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91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 ##gapPenalties=axtChain O=400 E=30 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 chain 42703 chr1 249250621 + 33533 34041 L1PA6 6164 - 2 512 65772 10 0 1 4 0 1 494 chain 5065 chr1 249250621 + 34047 34108 L1P1 4361 + 2962 3023 194478 61 chain 6201 chr1 249250621 + 46415 46484 LTR12F 595 - 115 184 183577 69 chain 24704 chr1 249250621 + 61862 62160 AluSc 308 - 11 308 106408 172 1 0 125 chain 20756 chr1 249250621 + 64425 64659 L1PA4 6152 + 5909 6143 124772 234 chain 28408 chr1 249250621 + 72184 72525 L1PA7 6471 - 6 349 91547 7 0 2 334 chain 31161 chr1 249250621 + 72525 72897 L1PA7 6471 + 5732 6108 82237 354 0 4 18 chain 96770 chr1 249250621 + 73844 74895 L1PA2 6032 - 0 1051 37627 1051 chain 165641 chr1 249250621 + 74897 76692 L1PA2 6032 + 3187 4982 22561 1795 chain 85159 chr1 249250621 + 154036 155099 MER11B 1079 + 0 1079 41464 220 0 5 91 1 18 49 0 1 388 8 2 290 5 4 11 chain 14597 chr1 249250621 + 353589 353949 THE1B 368 + 2 368 142602 77 36 38 34 84 89 58 24 23 47 chain 22141 chr1 249250621 + 356736 357268 L2c 621 + 100 615 119614 24 26 14 35 15 16 68 70 77 9 9 0 60 1 0 26 7 12 75 18 12 53 11 13 11 4 0 10 chain 512113 chr1 249250621 + 371979 378401 L1PA7 6471 - 3 6471 5965 9 2 0 126 12 13 250 1 0 432 0 4 16 1 0 14 0 1 254 1 0 457 1 2 194 2 0 52 0 2 129 0 35 124 0 5 251 0 1 88 2 0 174 1 0 25 0 1 118 3 7 187 2 0 74 13 11 6 0 7 299 0 4 12 3 1 450 0 1 229 2 3 166 0 1 291 0 1 243 0 1 261 5 0 534 20 14 228 0 1 4 1 0 20 7 8 59 1 8 132 22 16 148 2 3 63 3 2 196 chain 14726 chr1 249250621 + 380686 380852 L1PA4 6152 - 11 177 142179 166 chain 66186 chr1 249250621 + 380852 381574 L1PA4 6152 + 5252 5974 50013 722 chain 8592 chr1 249250621 + 383486 383584 L1PA5 6144 - 0 98 167772 98 chain 22134 chr1 249250621 + 386634 387019 L1PA8A 6298 - 123 428 119653 26 82 6 9 4 0 126 9 9 129 chain 22970 chr1 249250621 + 395586 395852 L1PA5 6144 + 5872 6142 115752 216 0 4 50 chain 9317 chr1 249250621 + 418518 418626 L1PA4 6152 + 6039 6152 163972 102 0 5 6 chain 19163 chr1 249250621 + 418636 418931 LTR39 781 + 177 474 129636 90 23 16 138 14 23 30 chain 57093 chr1 249250621 + 430182 431252 MER4E1 777 - 0 777 54477 217 0 4 6 9 7 28 3 25 148 310 0 137 1 0 4 7 5 155 1 0 16 3 0 25 chain 38455 chr1 249250621 + 432536 433194 LTR9B 643 - 0 643 71511 40 13 12 57 3 17 14 12 1 32 67 41 35 5 6 87 2 1 84 0 2 5 4 9 65 0 2 133 chain 3610 chr1 249250621 + 468328 468373 L1MC3 1789 - 918 963 213481 45 chain 38536 chr1 249250621 + 551412 552069 LTR9B 643 + 0 643 71385 112 21 23 65 4 9 5 0 2 172 5 6 35 67 41 30 7 0 10 0 10 71 13 12 40 chain 57092 chr1 249250621 + 553353 554424 MER4E1 777 + 0 777 54478 25 3 0 16 1 0 155 7 5 4 1 0 127 311 0 158 3 25 28 9 7 6 0 4 217 chain 19163 chr1 249250621 + 571537 571832 LTR39 781 - 307 604 129637 30 14 23 138 23 16 90 chain 9317 chr1 249250621 + 571843 571951 L1PA4 6152 - 0 113 163973 6 0 5 102 chain 4177 chr1 249250621 + 593115 593162 L1PA6 6164 - 5 52 204870 47 chain 23101 chr1 249250621 + 594605 594871 L1PA5 6144 - 2 272 115138 53 0 4 213 chain 21870 chr1 249250621 + 603449 603758 L1PA8A 6298 + 5870 6175 120752 129 9 9 126 19 15 26 chain 8592 chr1 249250621 + 606111 606209 L1PA5 6144 + 6046 6144 167767 98 chain 66055 chr1 249250621 + 608121 608843 L1PA4 6152 - 178 900 50073 722 chain 14857 chr1 249250621 + 608843 609009 L1PA4 6152 + 5975 6141 141768 166 chain 510222 chr1 249250621 + 611291 617713 L1PA7 6471 + 0 6468 6143 196 3 2 63 2 3 139 6 0 157 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 292 0 1 165 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 2 0 187 3 7 118 0 1 25 1 0 174 2 0 88 0 1 248 0 5 131 0 35 125 0 2 55 2 0 191 1 2 457 1 0 256 0 1 12 1 0 17 7 11 424 1 0 250 12 13 126 2 0 9 chain 24107 chr1 249250621 + 632413 632956 L2c 621 - 0 521 109704 15 4 0 12 11 13 53 18 12 113 1 0 60 9 0 9 70 77 68 15 16 35 26 14 24 chain 14383 chr1 249250621 + 635743 636103 THE1B 368 - 0 366 143261 47 24 23 58 84 89 34 36 38 77 chain 4926 chr1 249250621 + 636783 636909 LTR64 526 - 0 130 195974 52 51 55 23 chain 84720 chr1 249250621 + 689726 690789 MER11B 1079 + 0 1079 41630 220 0 5 91 1 18 49 0 1 388 8 2 290 5 4 11 chain 20761 chr1 249250621 + 720874 721106 L1PA4 6152 + 5911 6143 124750 232 chain 76533 chr1 249250621 + 734881 735782 L1PA7 6471 - 518 1430 45194 83 0 4 145 1 4 17 0 2 81 0 3 320 1 0 253 chain 42739 chr1 249250621 + 735789 736288 L1PA7 6471 + 5969 6465 65733 483 1 0 7 2 0 6 chain 51263 chr1 249250621 + 786028 786588 L1PA3long 6157 - 0 560 58149 560 chain 168851 chr1 249250621 + 818077 820716 L1PA7 6471 - 17 2367 22180 234 312 0 73 7 25 112 1 2 214 8 9 83 0 2 82 0 4 170 3 0 140 2 1 36 1 2 104 0 2 5 6 4 191 0 1 37 27 23 36 0 1 12 1 0 149 3 4 146 1 3 5 2 0 54 0 1 272 20 21 90 chain 3082 chr1 249250621 + 830889 830923 HERVK9-int 4720 + 4566 4600 214800 34 chain 162517 chr1 249250621 + 830923 832980 HERVK9-int 4720 - 1105 4714 22997 312 14 653 230 0 924 395 1 0 603 0 9 357 1 0 7 2 1 66 52 35 17 chain 42106 chr1 249250621 + 833578 834079 MER9a2 513 - 0 513 66494 186 0 11 115 0 1 200 chain 3595 chr1 249250621 + 921769 921814 MER4A1_ 611 + 553 598 213746 45 chain 29563 chr1 249250621 + 943131 943440 AluYa5 310 - 0 309 86370 309 chain 141057 chr1 249250621 + 952549 954256 LTR12C 1709 - 0 1709 25975 230 6 7 244 0 4 106 4 2 4 1 0 41 9 11 223 1 0 88 5 1 95 0 2 109 0 1 491 6 0 6 0 6 38 chain 80369 chr1 249250621 + 1000924 1001874 LTR13A 966 - 0 966 43447 342 0 4 116 0 5 239 1 2 75 0 2 104 0 4 73 chain 20151 chr1 249250621 + 1040989 1041259 AluY 311 + 10 287 126666 130 0 8 48 19 18 73 chain 20765 chr1 249250621 + 1042674 1043255 LTR12C 1709 + 876 1541 124732 36 2 0 197 293 380 9 1 0 43 chain 4089 chr1 249250621 + 1049647 1049691 MER50 708 - 663 707 206089 44 chain 9502 chr1 249250621 + 1072926 1073081 MER30 238 - 0 174 163067 45 0 3 31 0 6 24 5 0 7 14 29 29 chain 24085 chr1 249250621 + 1110218 1110514 AluSg 306 + 2 297 109830 5 0 1 278 2 0 11 chain 43470 chr1 249250621 + 1126974 1127488 MER9a1 513 - 0 513 64845 173 0 1 279 0 1 46 3 0 13 chain 62803 chr1 249250621 + 1185076 1185925 LTR13 1007 - 9 877 51537 22 3 1 58 0 3 101 0 1 70 0 1 32 9 15 65 2 1 128 0 11 91 0 1 4 1 0 7 4 5 20 18 17 214 chain 76487 chr1 249250621 + 1187647 1188589 LTR13_ 950 + 0 950 45217 439 0 2 37 0 4 117 1 0 266 0 2 35 10 11 37 chain 23719 chr1 249250621 + 1236155 1236446 AluSp 311 - 16 311 111942 155 0 4 136 chain 74699 chr1 249250621 + 1345186 1346153 LTR5_Hs 974 + 0 974 46161 289 0 1 177 0 1 99 0 1 4 1 0 247 8 15 19 20 18 103 chain 42962 chr1 249250621 + 1351613 1352135 Harlequin-int 5206 - 4319 4836 65459 393 1 0 9 3 0 57 3 2 56 chain 32605 chr1 249250621 + 1353757 1354225 LTR2B 499 - 0 490 79843 180 1 0 10 0 1 69 1 0 45 16 17 5 1 0 42 0 19 21 4 0 16 3 0 36 1 11 13 0 1 4 chain 19374 chr1 249250621 + 1401397 1401644 AluSp 311 + 57 304 129013 212 0 1 7 1 0 27 chain 30410 chr1 249250621 + 1405148 1405567 LTR7B 505 + 0 491 83663 105 0 10 68 7 69 25 1 3 85 1 0 76 14 13 37 chain 4155 chr1 249250621 + 1406616 1406732 LTR10A 586 - 417 563 205183 24 2 1 11 43 74 36 chain 7686 chr1 249250621 + 1436339 1436452 HERVIP10F-int 4088 - 1912 2023 173005 25 2 1 65 7 6 14 chain 73649 chr1 249250621 + 1440345 1441337 LTR13 1007 - 0 1007 46710 31 8 7 43 0 2 5 0 5 101 0 1 70 0 1 43 5 4 65 2 1 128 0 11 91 0 1 4 1 0 7 4 5 20 18 17 265 8 6 73 chain 21855 chr1 249250621 + 1456402 1456707 AluY 311 + 11 311 120799 36 7 1 18 6 8 49 5 4 184 chain 70730 chr1 249250621 + 1515722 1516631 LTR5_Hs 974 + 0 974 48050 288 0 1 178 0 1 177 12 11 163 8 15 17 13 70 53 chain 5482 chr1 249250621 + 1523206 1523274 MER65A 464 - 125 193 190207 68 chain 3514 chr1 249250621 + 1527061 1527107 MLT1C 463 + 63 108 215157 26 1 0 19 chain 12320 chr1 249250621 + 1527243 1527379 AluYc 301 + 144 280 150937 136 chain 24357 chr1 249250621 + 1598563 1598858 AluY 311 + 0 289 108335 123 1 0 3 5 0 163 chain 24815 chr1 249250621 + 1611290 1611578 AluSp 311 + 1 294 105802 62 0 2 84 0 3 142 chain 22936 chr1 249250621 + 1663069 1663372 AluSx1 309 + 8 309 115924 208 0 1 59 6 5 20 2 0 8 chain 20471 chr1 249250621 + 1697622 1697878 AluSp 311 + 60 311 125702 51 2 1 157 4 0 42 chain 25244 chr1 249250621 + 1704196 1704499 AluSp 311 + 0 301 103506 132 2 0 169 chain 23181 chr1 249250621 + 1705672 1705992 AluSp 311 - 15 311 114763 185 25 0 93 1 2 16 chain 26325 chr1 249250621 + 1722611 1722913 AluSp 311 - 13 311 98717 167 4 0 131 chain 27204 chr1 249250621 + 1730364 1730658 AluYf4 310 - 16 310 95579 294 chain 24867 chr1 249250621 + 1757025 1757317 AluY 311 + 4 296 105530 292 chain 23047 chr1 249250621 + 1781571 1781871 AluSp 311 - 15 311 115413 14 6 5 149 3 1 84 1 0 43 chain 26587 chr1 249250621 + 1786858 1787162 AluYf4 310 + 0 300 97704 198 5 1 101 chain 13638 chr1 249250621 + 1791334 1791504 L1PA5 6144 + 5978 6142 145823 52 6 0 112 chain 7511 chr1 249250621 + 1797977 1798107 MER30 238 - 0 143 174086 41 6 8 30 5 7 29 5 14 14 chain 22320 chr1 249250621 + 1811770 1812034 AluYc3 301 + 13 281 118826 100 1 2 64 0 3 99 chain 5382 chr1 249250621 + 1843432 1843588 MLT2D 439 - 162 331 191174 23 9 23 19 58 57 47 chain 24149 chr1 249250621 + 1862596 1863216 AluY 311 + 10 311 109475 264 317 3 28 5 0 6 chain 2002 chr1 249250621 + 1862871 1862893 AluY 311 + 282 304 238597 22 chain 22449 chr1 249250621 + 1862904 1863162 AluY 311 + 11 269 118253 258 chain 2095 chr1 249250621 + 2086572 2086718 HAL1-2a_MD 234 - 197 234 237673 13 31 0 14 78 0 10 chain 27845 chr1 249250621 + 2120166 2120472 AluY 311 + 4 311 93540 122 0 1 184 chain 26603 chr1 249250621 + 2208723 2209065 THE1A 353 + 0 341 97644 84 0 1 113 2 0 143 chain 125328 chr1 249250621 + 2295765 2297141 L1PA3long 6157 - 756 2145 29294 25 0 1 61 0 4 22 0 4 920 0 4 348 chain 70934 chr1 249250621 + 2297141 2297925 L1PA3long 6157 + 5372 6157 47845 754 0 1 30 chain 20712 chr1 249250621 + 2498340 2498588 AluSg4 309 - 60 308 124924 248 chain 7285 chr1 249250621 + 2510134 2510213 AluY 311 + 19 98 175549 79 chain 7976 chr1 249250621 + 2552306 2552423 MER4B 649 + 60 178 171193 52 1 0 4 4 5 26 1 2 29 chain 10611 chr1 249250621 + 2556567 2556707 MSTA-int 1630 - 0 141 157774 43 7 8 90 chain 78277 chr1 249250621 + 2556767 2557727 HERVL-int 5654 + 3016 3969 44385 164 4 0 113 0 2 533 13 8 133 chain 27327 chr1 249250621 + 2567399 2567756 MER4A1 472 - 11 471 95187 91 0 3 80 7 107 179 chain 66311 chr1 249250621 + 2700606 2701425 LTR13A 966 - 119 966 49942 76 1 0 147 0 4 116 0 5 239 1 2 113 0 12 8 5 8 37 0 4 76 chain 43731 chr1 249250621 + 2744492 2745004 MER9a1 513 - 0 513 64530 19 1 0 110 0 1 42 0 1 340 chain 2989 chr1 249250621 + 2756704 2756737 MER51A 677 - 445 478 225258 33 chain 3295 chr1 249250621 + 2757537 2757636 LTR52 417 + 337 417 219076 6 4 0 36 4 0 7 30 19 12 chain 3126 chr1 249250621 + 2857831 2857871 HAL1 992 - 415 455 222413 40 chain 120986 chr1 249250621 + 2871530 2873100 THE1C-int 1605 - 0 1605 30698 263 0 9 167 1 2 146 7 6 360 9 24 80 0 1 30 1 0 56 9 16 412 3 0 5 0 4 8 1 4 12 chain 28817 chr1 249250621 + 2911548 2911856 AluYg6 310 + 0 308 89816 308 chain 93844 chr1 249250621 + 3169775 3170808 L1PA3long 6157 - 2 1037 38402 146 1 0 701 0 3 185 chain 95626 chr1 249250621 + 3170818 3171858 L1PA3long 6157 + 4089 5133 37925 265 0 4 775 chain 28938 chr1 249250621 + 3429015 3429384 THE1B 368 + 0 367 89279 172 2 1 98 1 0 96 chain 27033 chr1 249250621 + 3492083 3492417 THE1B 368 - 31 368 96169 145 2 0 143 4 9 40 chain 14538 chr1 249250621 + 3537027 3537211 THE1D-int 1627 + 882 1064 142776 163 2 0 19 chain 25117 chr1 249250621 + 3559021 3559320 AluSp 311 + 1 301 104187 100 0 1 199 chain 3007 chr1 249250621 + 3575423 3575459 MER34C_ 573 - 504 540 187502 36 chain 5978 chr1 249250621 + 3575459 3575528 MER34C_ 573 - 504 573 185450 69 chain 3047 chr1 249250621 + 3629318 3629350 MIRb 242 - 107 139 224067 32 chain 75097 chr1 249250621 + 3664782 3665710 LTR13A 966 - 0 966 45971 92 0 4 12 5 6 143 11 22 183 0 5 19 0 1 219 1 2 109 0 12 14 0 3 120 chain 24831 chr1 249250621 + 3669875 3670198 AluSp 311 - 0 310 105718 154 0 3 23 16 0 130 chain 23228 chr1 249250621 + 3672622 3672922 AluSg7 307 + 0 299 114556 69 1 0 57 1 0 16 2 0 7 3 6 144 chain 21786 chr1 249250621 + 3697283 3697561 AluSc 308 + 24 297 121074 266 5 0 7 chain 12101 chr1 249250621 + 3715042 3715249 MER4D1 891 + 18 209 151792 96 17 0 38 1 0 27 14 16 14 chain 38503 chr1 249250621 + 3718035 3718512 LTR13 1007 - 529 1007 71433 92 4 5 115 0 2 181 0 3 6 6 1 73 chain 79497 chr1 249250621 + 3722496 3723494 LTR13 1007 - 0 1007 43827 20 22 20 52 1 0 214 2 1 273 0 14 27 4 5 308 2 0 73 chain 25743 chr1 249250621 + 3725660 3725952 AluSp 311 - 19 311 101111 292 chain 32908 chr1 249250621 + 3726435 3726873 LTR3B_ 500 + 11 452 79356 67 1 0 26 0 4 53 0 1 136 6 7 43 6 4 100 chain 24212 chr1 249250621 + 3740661 3740939 AluSp 311 - 23 301 109140 278 chain 2736 chr1 249250621 + 3781418 3781607 L1MD2 1676 - 735 894 229664 27 143 113 19 chain 24992 chr1 249250621 + 3788695 3788991 AluSc 308 + 0 295 104842 19 1 0 276 chain 27065 chr1 249250621 + 3834907 3835262 THE1B 368 + 1 368 96055 32 7 22 117 1 0 12 10 8 176 chain 26932 chr1 249250621 + 4040291 4040652 THE1C 375 - 6 371 96508 19 1 0 155 9 10 44 1 5 132 chain 9580 chr1 249250621 + 4045456 4045572 AluJo 314 + 160 276 162696 116 chain 25932 chr1 249250621 + 4049916 4050288 THE1C 375 + 0 375 100295 79 6 7 99 24 23 15 1 4 32 0 1 90 1 0 25 chain 26583 chr1 249250621 + 4051152 4051561 L1PA13 3608 - 117 534 97714 23 1 0 20 8 4 48 2 0 4 1 0 38 1 0 20 1 0 27 0 4 10 4 20 113 1 0 28 1 0 58 chain 18860 chr1 249250621 + 4073343 4073561 AluY 311 + 92 310 130485 218 chain 5000 chr1 249250621 + 4073938 4073995 MSTD 398 - 119 176 195134 57 chain 318618 chr1 249250621 + 4095500 4100024 L1PB1 5432 + 777 5282 12645 71 0 1 81 13 7 33 29 25 17 0 1 69 0 3 31 1 9 281 0 8 97 0 8 8 8 0 83 1 2 120 14 18 496 6 7 120 0 1 13 0 1 62 1 0 4 5 6 35 14 1 49 1 6 67 6 7 199 8 13 5 2 0 163 29 21 172 0 4 106 10 12 67 9 3 6 0 1 329 5 7 229 46 49 143 6 7 434 12 14 17 3 0 81 1 0 6 0 1 90 0 9 91 2 0 199 1 2 10 13 3 20 28 6 14 5 1 9 2 0 52 2 1 10 7 6 45 chain 264102 chr1 249250621 + 4100043 4103259 L1P2 5180 + 2 3257 15479 110 9 8 21 0 11 95 6 5 255 1 0 8 1 0 65 1 2 205 1 16 10 17 0 120 1 26 1247 0 2 603 0 4 361 0 1 6 0 1 73 chain 42162 chr1 249250621 + 4119691 4120172 L1PA3long 6157 + 5675 6157 66441 209 0 1 272 chain 26493 chr1 249250621 + 4139552 4139902 THE1B 368 - 0 368 98074 34 0 4 158 1 0 104 9 24 44 chain 20222 chr1 249250621 + 4140795 4141042 L1PA6 6164 + 5913 6160 126463 247 chain 29022 chr1 249250621 + 4155156 4155460 AluYb8 318 - 14 318 88898 304 chain 225532 chr1 249250621 + 4162603 4165105 L1PA3long 6157 + 3649 6157 17557 577 1 0 417 0 3 1358 1 5 148 chain 4150 chr1 249250621 + 4175958 4176009 MLT1C 463 - 2 53 205240 51 chain 6051 chr1 249250621 + 4196636 4197232 MSTD 398 + 134 371 184797 38 448 88 20 44 45 46 chain 2083 chr1 249250621 + 4196998 4197020 MSTD 398 + 136 158 237788 22 chain 38778 chr1 249250621 + 4228039 4228546 MLT2A2 560 - 0 551 71042 69 0 1 73 0 11 36 3 36 154 1 0 171 chain 34383 chr1 249250621 + 4238105 4238560 LTR7B 505 - 9 505 77090 42 14 13 81 1 0 80 0 2 30 0 24 27 7 14 68 0 10 105 chain 228875 chr1 249250621 + 4244779 4247537 HERVH-int 3825 - 0 2762 17364 379 3 0 7 7 10 987 3 0 7 2 5 132 0 1 196 10 15 84 0 4 287 0 2 239 1 0 10 0 2 28 9 0 367 chain 133566 chr1 249250621 + 4255517 4260392 L1PB1 5432 + 1136 5422 27307 234 4 5 12 50 57 96 2796 2211 30 0 1 4 1 0 68 0 1 106 0 1 108 7 0 545 15 9 8 4 0 164 1 0 292 8 26 24 1 0 8 0 13 9 3 1 44 9 8 15 1 0 45 1 0 5 37 25 11 13 10 14 2 0 24 1 0 16 1 0 6 1 0 12 1 0 18 chain 36921 chr1 249250621 + 4269723 4270222 MLT2A2 560 - 34 560 73630 36 0 1 10 0 1 65 0 11 71 0 1 24 0 4 139 0 1 11 17 19 59 0 6 67 chain 25359 chr1 249250621 + 4271206 4271483 AluYb8 318 + 41 316 102893 91 2 0 184 chain 2611 chr1 249250621 + 4280581 4280775 MLT1C 463 - 256 446 231538 6 1 0 15 43 47 11 9 4 12 67 66 23 1 0 6 chain 10038 chr1 249250621 + 4289025 4289147 L1PB1 5432 + 4674 4796 160389 122 chain 15786 chr1 249250621 + 4289149 4289334 L1PB1 5432 + 4806 4991 138994 185 chain 25727 chr1 249250621 + 4289336 4289801 L1PB1 5432 + 4996 5427 101185 118 3 0 24 1 0 8 2 1 9 18 12 52 2 1 10 6 5 45 1 0 15 1 0 6 1 0 11 8 0 14 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 26416 chr1 249250621 + 4298426 4298761 THE1C 375 - 33 367 98354 156 1 0 178 chain 250090 chr1 249250621 + 4304447 4307188 L1PA3long 6157 - 0 2744 16248 339 1 0 581 0 3 572 0 1 26 1 0 615 0 1 606 chain 42965 chr1 249250621 + 4312563 4313110 MLT2A2 560 + 0 560 65457 180 1 0 174 0 2 46 0 11 77 0 1 69 chain 17939 chr1 249250621 + 4329817 4330015 L1PA4 6152 + 5943 6140 133008 53 1 0 144 chain 50358 chr1 249250621 + 4346429 4347212 L1PA15 4387 - 60 837 58751 11 2 0 46 45 42 11 13 9 23 2 1 54 1 0 28 1 0 176 0 9 83 5 1 9 1 0 9 0 2 109 1 2 85 1 0 67 chain 20707 chr1 249250621 + 4356830 4357130 THE1B 368 - 62 368 124939 64 1 0 12 7 6 10 1 5 9 5 10 21 1 0 169 chain 28299 chr1 249250621 + 4369272 4369607 L1PA4 6152 + 5809 6152 91950 190 1 4 138 0 5 6 chain 57827 chr1 249250621 + 4409660 4410367 L1PA7 6471 + 5767 6469 54073 209 7 0 293 1 0 51 4 5 131 0 2 11 chain 44685 chr1 249250621 + 4424382 4424896 L1PA6 6164 + 5646 6161 63391 500 1 0 5 0 2 8 chain 76987 chr1 249250621 + 4441174 4442250 MER11A 1151 - 0 1151 44973 170 0 1 59 0 1 36 19 24 23 24 0 123 4 0 24 21 22 34 0 2 88 0 7 8 8 0 88 0 1 146 4 0 66 1 0 50 0 99 56 1 0 23 chain 23942 chr1 249250621 + 4451626 4451960 THE1C 375 + 0 350 110671 136 1 5 16 8 22 7 3 0 59 3 4 101 chain 21456 chr1 249250621 + 4464217 4464505 L1PA8 5853 - 6 290 122307 87 1 0 16 1 0 65 2 1 70 5 4 41 chain 25013 chr1 249250621 + 4464506 4464813 L1PA8 5853 + 5274 5580 104718 288 1 0 18 chain 26100 chr1 249250621 + 4497293 4497673 MSTA 426 - 0 407 99618 109 1 21 56 10 8 26 2 0 47 0 6 39 15 20 75 chain 6435 chr1 249250621 + 4499781 4499862 MLT1B 390 + 293 374 181739 81 chain 34155 chr1 249250621 + 4506482 4506928 LTR19A 502 + 0 484 77406 186 3 40 13 1 0 12 1 2 58 1 2 171 chain 21545 chr1 249250621 + 4525082 4525445 THE1B 368 + 0 368 121984 108 8 9 52 1 0 6 0 3 6 54 56 66 1 0 4 1 2 56 chain 42188 chr1 249250621 + 4552976 4553514 MLT2A2 560 + 10 560 66411 389 4 15 76 0 1 69 chain 29140 chr1 249250621 + 4560090 4560400 AluYb8 318 - 8 318 88363 310 chain 37910 chr1 249250621 + 4568166 4568625 L1PA5 6144 + 5636 6142 72271 82 0 19 222 9 37 146 chain 27820 chr1 249250621 + 4612199 4612553 THE1A 353 - 0 353 93632 243 2 1 109 chain 17240 chr1 249250621 + 4627564 4627928 THE1B 368 + 0 368 134957 79 43 44 54 59 63 66 16 15 47 chain 306016 chr1 249250621 + 4636934 4640829 L1PA8A 6298 - 7 3890 13170 277 0 3 57 0 3 387 15 16 4 0 1 53 3 1 72 1 0 118 0 2 5 4 3 636 0 1 295 1 2 130 50 0 177 9 22 54 0 2 96 25 27 448 1 0 130 1 2 61 2 0 183 0 4 45 1 5 194 0 1 197 0 3 4 0 1 67 0 2 92 chain 46344 chr1 249250621 + 4647627 4648244 LTR66 600 - 0 600 61731 111 7 6 10 14 0 15 0 1 45 2 0 236 1 0 176 chain 26818 chr1 249250621 + 4650510 4651084 HERVL66-int 1251 - 580 1060 96919 27 4 3 45 55 42 58 1 0 122 30 18 18 15 0 16 10 5 17 20 1 44 28 0 64 chain 45589 chr1 249250621 + 4651394 4651971 LTR66 600 - 0 600 62419 9 0 2 110 3 16 50 0 6 211 1 2 132 0 1 61 chain 55131 chr1 249250621 + 4657563 4658272 L1PA8 5853 + 5145 5853 55620 419 1 0 44 2 0 69 1 0 13 1 0 4 0 1 6 1 0 39 2 1 19 1 0 73 0 6 14 chain 3470 chr1 249250621 + 4707739 4707831 HAL1-2a_MD 234 - 15 210 215827 11 9 0 12 1 77 29 1 46 12 9 0 8 chain 3339 chr1 249250621 + 4729184 4729251 L1MB5 1630 - 53 119 218235 25 19 18 23 chain 20561 chr1 249250621 + 4729374 4729721 THE1D 372 - 19 372 125429 44 0 1 91 47 51 87 4 5 14 2 3 6 3 0 36 0 2 13 chain 91550 chr1 249250621 + 4764230 4765235 L1PA3long 6157 - 11 1017 39114 261 0 1 744 chain 18637 chr1 249250621 + 4765235 4765436 L1PA3long 6157 + 4934 5135 130880 201 chain 10050 chr1 249250621 + 4822083 4822204 HERVL-int 5654 - 0 121 160322 121 chain 25822 chr1 249250621 + 4868340 4868734 MSTA 426 + 0 405 100779 25 4 1 10 0 1 62 5 6 24 2 0 14 0 7 55 10 9 22 7 5 61 0 10 93 chain 39027 chr1 249250621 + 4877287 4877830 MLT2A2 560 + 0 560 70701 14 14 19 57 6 7 304 5 16 143 chain 48753 chr1 249250621 + 4886821 4887409 LTR10C 591 + 0 591 59910 215 0 1 292 0 2 81 chain 32288 chr1 249250621 + 4895093 4895499 MLT2A1 477 - 74 477 80383 19 1 0 87 1 0 92 0 1 24 0 1 10 4 1 168 chain 22321 chr1 249250621 + 4895499 4895761 HERVL-int 5654 - 0 265 118821 34 0 1 199 0 2 29 chain 15280 chr1 249250621 + 4906473 4906666 L1PA7 6471 - 7 201 140538 151 4 5 38 chain 119126 chr1 249250621 + 4917892 4919427 THE1B-int 1605 + 25 1584 31368 128 54 0 120 0 6 117 1 65 227 0 1 247 0 7 641 chain 83060 chr1 249250621 + 4919838 4920811 L1PA5 6144 - 4 978 42309 105 1 0 40 0 1 522 1 2 304 chain 519348 chr1 249250621 + 4920825 4927287 L1PA4 6152 - 1 6142 5228 427 0 2 1766 0 2 265 1 0 849 318 0 491 0 1 27 2 1 146 2 1 457 1 0 529 19 10 32 0 2 103 7 6 105 0 4 915 chain 105742 chr1 249250621 + 4934931 4936156 L1PA6 6164 - 2 1229 35321 464 0 2 207 0 1 180 1 0 373 chain 8365 chr1 249250621 + 4936215 4936318 MLT1A0 366 - 233 336 169046 103 chain 38006 chr1 249250621 + 4938460 4938956 MLT2A2 560 + 2 540 72124 181 2 0 125 6 38 60 0 11 73 0 1 49 chain 11198 chr1 249250621 + 4964111 4964257 L1PA8 5853 - 0 144 155429 93 1 0 19 2 1 31 chain 28311 chr1 249250621 + 4978097 4978454 THE1B 368 - 12 368 91902 188 1 0 168 chain 14543 chr1 249250621 + 5078946 5079299 THE1D 372 + 0 338 142744 14 0 2 10 4 3 38 29 30 42 5 6 18 84 72 6 6 0 97 chain 32013 chr1 249250621 + 5082105 5082530 MER83 447 - 15 447 80844 20 16 13 121 0 10 268 chain 35695 chr1 249250621 + 5104855 5105295 LTR7 482 + 0 482 75278 264 0 31 85 0 4 35 17 23 16 0 1 23 chain 300953 chr1 249250621 + 5105297 5108949 HERVH-int 3825 + 0 3825 13377 488 2 0 44 66 0 38 1 0 10 1 0 24 29 0 15 0 37 42 2 1 56 0 1 8 0 2 12 0 3 17 0 1 116 0 3 318 16 1 204 0 1 243 4 31 1372 1 4 28 8 218 487 chain 4834 chr1 249250621 + 5105836 5105892 HERVH-int 3825 + 476 532 196987 56 chain 37778 chr1 249250621 + 5112709 5113158 LTR7 482 + 0 482 72445 266 0 31 122 12 14 49 chain 9600 chr1 249250621 + 5126165 5126334 MER34B 572 - 60 231 162599 114 39 41 16 chain 25247 chr1 249250621 + 5126468 5126823 THE1A 353 + 0 353 103489 64 1 2 43 2 1 140 9 8 22 1 0 73 chain 24583 chr1 249250621 + 5128497 5128859 THE1B 368 - 4 366 107071 115 11 10 9 1 0 12 13 17 32 1 0 61 1 0 106 chain 16450 chr1 249250621 + 5149074 5149252 L1PA4 6152 - 1 180 137063 147 0 1 31 chain 10161 chr1 249250621 + 5149262 5149471 Tigger2 2703 + 2499 2659 159798 45 58 12 83 4 1 19 chain 224623 chr1 249250621 + 5174546 5177225 HERVH-int 3825 + 921 3825 17623 30 0 4 268 15 0 218 0 1 225 4 0 18 6 33 1046 11 13 255 2 0 38 9 11 38 0 210 496 chain 39429 chr1 249250621 + 5178499 5178948 LTR7 482 + 0 482 70118 225 0 1 4 0 31 54 0 1 166 chain 106185 chr1 249250621 + 5241986 5243168 L1PA3long 6157 - 0 1179 35216 149 1 0 763 2 0 267 chain 8318 chr1 249250621 + 5254818 5254922 MER85 139 - 17 131 169287 23 0 10 81 chain 16121 chr1 249250621 + 5274181 5274528 L1PB1 5432 - 5 318 137991 5 2 0 18 1 0 9 6 5 20 1 0 24 12 10 4 1 0 5 2 0 30 14 1 15 1 0 45 1 0 15 2 1 47 35 28 10 1 0 21 chain 15114 chr1 249250621 + 5293391 5293708 THE1D 372 + 0 335 141001 54 26 24 50 1 0 5 8 12 15 64 81 94 chain 19172 chr1 249250621 + 5311219 5311568 THE1B 368 + 0 354 129608 111 0 3 6 2 0 49 32 26 5 1 0 8 2 6 11 7 15 66 18 17 31 chain 23313 chr1 249250621 + 5317674 5318034 THE1B 368 + 0 368 114138 169 1 0 29 42 52 56 15 14 48 chain 27986 chr1 249250621 + 5323590 5323961 THE1B 368 + 0 368 93052 104 5 6 59 1 0 23 2 0 38 1 0 138 chain 3681 chr1 249250621 + 5402679 5402723 MADE1 96 + 1 45 212210 44 chain 26869 chr1 249250621 + 5421082 5421450 THE1C 375 + 0 375 96747 114 0 6 14 3 0 8 7 11 33 0 1 162 1 0 26 chain 40877 chr1 249250621 + 5425254 5425787 MER41A 554 - 0 554 68052 19 0 13 37 11 16 48 0 1 135 0 1 191 0 1 92 chain 4344 chr1 249250621 + 5461865 5461912 MER31A 484 + 43 90 202680 47 chain 5423 chr1 249250621 + 5476887 5476966 MADE1 96 + 1 96 190775 37 0 1 4 1 16 37 chain 24751 chr1 249250621 + 5497520 5497874 THE1B 368 - 0 368 106168 56 8 6 5 0 1 34 1 2 91 8 7 107 0 15 44 chain 31606 chr1 249250621 + 5516979 5517323 L1PA3long 6157 - 5 349 81475 344 chain 6403 chr1 249250621 + 5524125 5524198 MLT1A 405 + 268 342 181998 47 0 1 26 chain 22717 chr1 249250621 + 5524920 5525161 AluYa5 310 - 6 247 117004 241 chain 4554 chr1 249250621 + 5527243 5527406 MLT1A0 366 + 179 340 200181 19 65 67 20 21 17 38 chain 3040 chr1 249250621 + 5552199 5552279 MER103C 291 - 136 223 224208 24 33 40 23 chain 111884 chr1 249250621 + 5579163 5580726 THE1B-int 1605 - 7 1570 33698 561 0 1 272 0 9 57 0 1 23 16 17 63 40 18 125 72 58 193 0 24 141 chain 26120 chr1 249250621 + 5604248 5604576 L1PA6 6164 + 5814 6113 99527 34 1 0 91 28 0 174 chain 90394 chr1 249250621 + 5633660 5634670 LTR5B 1012 - 0 1012 39509 909 0 2 101 chain 24405 chr1 249250621 + 5639057 5639648 THE1A 353 - 0 353 108052 111 1 15 158 258 6 63 chain 18905 chr1 249250621 + 5644507 5644873 MSTA 426 - 21 426 130349 35 5 4 48 5 25 37 43 42 9 2 0 41 33 56 108 chain 6874 chr1 249250621 + 5669792 5669871 L1PA5 6144 + 6059 6138 178402 79 chain 108651 chr1 249250621 + 5701535 5702869 L1PA7 6471 + 5131 6470 34525 491 2 0 32 8 14 30 0 2 431 4 0 173 8 9 143 0 2 12 chain 64616 chr1 249250621 + 5714120 5714855 L1PA4 6152 + 5402 6143 50740 348 7 13 380 chain 11470 chr1 249250621 + 5751282 5751543 L1PB1 5432 + 5179 5424 154422 41 3 2 20 1 0 39 76 65 24 1 0 23 1 0 11 1 0 20 chain 6243 chr1 249250621 + 5761060 5761156 L1MD 993 + 364 458 183222 18 8 6 70 chain 22387 chr1 249250621 + 5787047 5787295 L1PA3long 6157 + 5908 6157 118554 27 0 1 221 chain 21302 chr1 249250621 + 5792163 5792540 L1PA17 2846 - 153 523 122855 44 1 0 17 1 0 32 13 10 11 2 1 4 0 1 40 1 0 13 8 0 8 13 10 99 8 0 17 4 22 41 chain 40645 chr1 249250621 + 5792634 5793078 L1PA2 6032 - 7 450 68376 6 2 0 20 0 1 416 chain 33017 chr1 249250621 + 5793088 5793449 L1PA2 6032 + 5221 5582 79189 361 chain 25247 chr1 249250621 + 5823501 5823826 THE1C 375 + 12 336 103490 232 6 5 87 chain 64393 chr1 249250621 + 5826929 5827966 MER11C 1089 - 0 1089 50846 11 2 1 241 75 94 13 7 31 100 21 23 28 13 13 7 0 1 15 24 12 22 18 17 123 1 18 52 0 3 264 chain 25355 chr1 249250621 + 5838002 5838373 THE1C 375 + 0 375 102920 63 19 20 52 0 4 44 1 2 5 1 0 156 8 7 22 chain 2988 chr1 249250621 + 5840017 5840052 MIR 256 + 103 139 225270 30 0 1 5 chain 44168 chr1 249250621 + 5841921 5842517 LTR71B 605 + 2 605 63988 75 6 9 39 18 22 51 0 1 155 4 1 115 11 13 122 chain 57874 chr1 249250621 + 5843433 5844095 L1PA5 6144 + 5489 6144 54047 646 7 0 9 chain 77754 chr1 249250621 + 5849224 5850279 MER11C 1089 + 0 1063 44633 247 0 9 61 0 4 64 1 0 148 59 50 107 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 51556 chr1 249250621 + 5850474 5851134 THE1C-int 1605 + 924 1598 57921 72 0 13 131 29 30 271 1 0 35 0 1 121 chain 23313 chr1 249250621 + 5866906 5867240 L1PA8 5853 + 5526 5853 114137 38 1 0 42 6 4 72 1 0 6 1 0 50 9 8 14 2 1 92 chain 8363 chr1 249250621 + 5873561 5873664 L1MA3 4352 + 3883 3986 169058 103 chain 6207 chr1 249250621 + 5875935 5876014 MADE1 96 - 1 96 183524 36 1 17 42 chain 27520 chr1 249250621 + 5878508 5878883 THE1B 368 + 0 368 94602 172 4 2 15 8 0 105 0 3 71 chain 15019 chr1 249250621 + 5883639 5883877 MER4B 649 + 18 299 141269 62 0 1 12 1 0 22 5 6 15 21 63 100 chain 140178 chr1 249250621 + 5884400 5885941 L1PA3long 6157 + 4612 6157 26118 29 1 0 342 0 1 326 0 4 843 chain 2824 chr1 249250621 + 5900103 5900135 MLT2D 439 + 403 435 228316 32 chain 7547 chr1 249250621 + 5952256 5952351 L1P2 5180 + 36 131 173888 95 chain 88307 chr1 249250621 + 5953222 5954230 LTR13 1007 - 0 1007 40260 378 5 4 625 chain 36281 chr1 249250621 + 5954965 5955398 L1PA4 6152 + 5713 6152 74525 180 1 2 246 0 5 6 chain 4251 chr1 249250621 + 5961138 5961244 L1MC2 1988 + 1892 1988 203854 27 43 33 36 chain 8451 chr1 249250621 + 5991363 5991517 Tigger1 2417 - 60 203 168562 17 2 3 54 5 6 14 0 1 14 14 0 34 chain 35946 chr1 249250621 + 5998710 5999215 MER75 514 - 0 514 74962 21 1 2 132 0 4 286 37 41 28 chain 19484 chr1 249250621 + 6028862 6029103 AluSz6 309 + 51 299 128705 96 0 7 145 chain 10808 chr1 249250621 + 6033508 6033640 AluJr 308 + 147 279 156948 132 chain 7790 chr1 249250621 + 6114307 6114408 MER51A 677 - 0 96 172358 19 4 0 44 1 0 33 chain 13219 chr1 249250621 + 6174447 6174681 MER30 238 - 0 202 147395 78 1 0 22 61 30 72 chain 7013 chr1 249250621 + 6175678 6175942 MLT1E2 623 + 335 597 177379 25 0 1 46 161 158 32 chain 21859 chr1 249250621 + 6250449 6250712 AluSp 311 - 21 285 120785 201 0 1 62 chain 25111 chr1 249250621 + 6253383 6253681 AluSp 311 - 11 310 104222 115 0 1 183 chain 19890 chr1 249250621 + 6254953 6255200 AluY 311 + 37 286 127517 95 0 1 28 1 2 123 chain 160043 chr1 249250621 + 6364455 6366296 SVA_D 2077 - 0 2071 23331 595 0 49 31 13 0 5 0 1 8 0 12 123 49 0 134 0 100 53 0 52 149 0 40 75 0 40 591 2 0 13 chain 4085 chr1 249250621 + 6365230 6365279 SVA_D 2077 - 951 1000 105673 49 chain 25821 chr1 249250621 + 6392594 6392909 AluY 311 + 1 311 100784 121 5 0 189 chain 73575 chr1 249250621 + 6422993 6423967 LTR13 1007 + 7 994 46748 66 2 0 5 3 0 5 0 3 180 0 2 196 1 3 63 0 4 149 25 28 197 0 5 62 4 3 16 chain 24526 chr1 249250621 + 6425557 6425843 AluY 311 + 10 298 107398 113 0 1 8 0 1 165 chain 60521 chr1 249250621 + 6425843 6432607 Tigger1 2417 - 194 1934 52570 62 4 6 33 725 101 18 0 3 32 588 41 37 3088 491 78 664 0 22 0 1 34 1 0 193 745 150 246 4 0 6 2 1 71 1 0 91 0 4 19 chain 3165 chr1 249250621 + 6428002 6428035 MER52D 1964 - 703 736 221657 33 chain 82056 chr1 249250621 + 6455134 6456353 LTR12E 1234 - 0 1234 42742 84 14 41 37 0 1 24 16 15 29 0 29 114 9 20 88 48 0 58 41 0 234 1 2 48 0 1 5 1 0 22 10 53 57 0 1 83 0 1 153 4 0 4 6 1 29 chain 24027 chr1 249250621 + 6462326 6462619 AluY 311 + 15 299 110173 111 9 0 173 chain 15279 chr1 249250621 + 6490673 6490858 AluSp 311 + 124 304 140543 160 5 0 20 chain 3427 chr1 249250621 + 6499317 6499373 MER53 195 + 47 106 216629 20 7 10 29 chain 3426 chr1 249250621 + 6561672 6561741 MIR 256 - 116 189 216637 30 17 18 17 0 3 5 chain 3044 chr1 249250621 + 6565639 6565676 MIR 256 + 106 143 224115 37 chain 29181 chr1 249250621 + 6621891 6622635 LTR14B 630 - 1 630 88146 47 34 42 185 0 11 17 7 53 48 298 117 8 0 1 100 chain 23667 chr1 249250621 + 6628228 6628536 AluY 311 + 1 304 112215 117 4 0 8 1 0 49 12 12 117 chain 5573 chr1 249250621 + 6630195 6630285 LTR21B 408 - 26 114 189347 32 2 4 37 2 0 3 2 0 12 chain 26436 chr1 249250621 + 6633712 6634022 AluYg6 310 - 2 310 98282 182 2 0 126 chain 25635 chr1 249250621 + 6634033 6634345 MER1A 529 - 147 488 101560 228 0 29 84 chain 21100 chr1 249250621 + 6668332 6668611 AluY 311 + 30 311 123553 79 16 18 184 chain 12499 chr1 249250621 + 6722594 6723068 LTR12 884 + 187 869 150246 42 10 14 86 86 23 26 188 455 36 chain 8657 chr1 249250621 + 6759703 6759812 L1PA8 5853 + 5745 5853 167439 15 1 0 93 chain 39020 chr1 249250621 + 6759996 6760471 LTR7B 505 + 6 505 70716 202 7 5 17 1 27 248 chain 151656 chr1 249250621 + 6774578 6776390 SVA_D 2077 - 10 2077 24378 540 0 1 51 0 1 19 0 1 10 0 224 145 9 5 32 2 4 86 11 0 3 24 0 6 5 0 22 3 1 8 3 0 22 0 40 85 0 40 708 5 0 13 chain 5958 chr1 249250621 + 6778504 6778704 MER20 218 - 14 216 185613 42 93 95 25 2 3 8 4 3 26 chain 18938 chr1 249250621 + 6784120 6784463 MSTA 426 - 12 396 130263 97 3 24 36 45 45 6 4 0 58 24 48 70 chain 30050 chr1 249250621 + 6802804 6803219 MLT2A1 477 - 66 477 84646 6 1 0 5 1 0 5 1 0 10 4 0 108 1 0 9 1 0 49 0 1 14 0 1 23 3 4 5 3 0 138 0 5 28 chain 24191 chr1 249250621 + 6805587 6805878 AluSx1 309 + 2 295 109269 125 0 2 166 chain 9833 chr1 249250621 + 6808851 6809043 THE1C 375 + 130 331 161436 53 44 52 43 9 10 43 chain 26842 chr1 249250621 + 6858644 6858933 AluYb8 318 - 7 296 96836 289 chain 5606 chr1 249250621 + 6880054 6880183 L1MC4 1079 - 264 393 189022 16 43 42 48 1 2 21 chain 24661 chr1 249250621 + 6979672 6980033 THE1B 368 - 0 368 106667 75 1 0 68 7 9 16 0 4 24 15 14 116 0 5 24 2 0 13 chain 19367 chr1 249250621 + 6981622 6981949 THE1B 368 - 0 326 129033 31 1 0 44 1 0 99 0 2 20 83 82 48 chain 2301 chr1 249250621 + 6981949 6981973 THE1B 368 - 331 355 235379 24 chain 23552 chr1 249250621 + 6996770 6997066 AluY 311 + 4 299 112835 128 0 1 143 5 6 9 3 0 8 chain 25191 chr1 249250621 + 7036817 7037181 THE1B 368 + 0 368 103793 169 1 0 21 7 10 10 0 4 10 13 12 4 1 0 128 chain 22688 chr1 249250621 + 7040584 7040953 THE1B 368 + 0 368 117130 95 4 4 5 3 0 64 1 0 22 26 31 9 1 0 10 1 0 66 1 0 4 1 2 56 chain 13259 chr1 249250621 + 7080346 7080588 Tigger3a 397 + 142 369 147252 44 0 1 71 60 42 16 0 2 51 chain 14744 chr1 249250621 + 7174408 7174637 MER30 238 - 0 238 142122 48 4 1 34 13 34 15 9 0 106 chain 25803 chr1 249250621 + 7191010 7191311 AluSc 308 - 7 308 100852 301 chain 7274 chr1 249250621 + 7204117 7204216 MLT1B 390 - 16 116 175626 58 3 4 38 chain 33303 chr1 249250621 + 7230371 7230803 L1PA8 5853 - 0 426 78726 93 1 0 19 2 1 61 13 12 59 2 0 44 1 0 137 chain 9664 chr1 249250621 + 7244013 7244155 L1MA2 4263 + 3979 4114 162274 79 7 0 13 1 2 32 1 0 9 chain 52528 chr1 249250621 + 7249455 7250338 L1PB1 5432 + 4581 5427 57279 45 3 0 178 7 6 182 19 24 87 41 33 10 1 0 10 2 0 3 2 0 7 3 1 46 0 1 6 2 1 15 1 0 41 43 31 19 2 0 4 1 0 14 6 4 21 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 64956 chr1 249250621 + 7273678 7274407 L1PA4 6152 - 9 738 50590 729 chain 22255 chr1 249250621 + 7287389 7287676 AluSp 311 - 17 299 119104 5 2 0 19 2 1 137 2 0 120 chain 43354 chr1 249250621 + 7303390 7303870 L1PA4 6152 - 1103 1582 64985 420 1 0 59 chain 98547 chr1 249250621 + 7303871 7304963 L1PA4 6152 + 5061 6152 37139 944 1 0 147 chain 20038 chr1 249250621 + 7315091 7315342 L1PA7 6471 + 6204 6455 127016 251 chain 4140 chr1 249250621 + 7317736 7317871 MER53 195 + 33 194 205360 34 7 8 19 54 79 21 chain 27914 chr1 249250621 + 7369348 7369658 AluYa5 310 - 0 310 93307 310 chain 4923 chr1 249250621 + 7433204 7433265 MER20 218 - 44 105 196008 61 chain 24319 chr1 249250621 + 7440362 7440656 AluSp 311 + 9 303 108549 294 chain 69465 chr1 249250621 + 7441222 7441980 L1PA3long 6157 - 5 766 48623 753 0 3 5 chain 549167 chr1 249250621 + 7471820 7477982 L1PA4 6152 - 1 6149 1557 849 0 4 1617 1 0 2625 0 1 222 23 6 247 1 0 154 0 1 135 1 0 287 chain 24952 chr1 249250621 + 7489760 7490138 MSTA 426 - 18 418 105044 90 2 16 66 2 0 18 4 6 6 1 0 36 22 26 16 1 0 9 0 5 10 0 1 95 chain 40236 chr1 249250621 + 7603409 7603907 MER75 514 + 0 498 68969 498 chain 24084 chr1 249250621 + 7604122 7604475 THE1A 353 - 0 353 109843 151 1 0 68 26 27 13 14 13 28 0 2 4 1 0 47 chain 8143 chr1 249250621 + 7607478 7607649 MER2 342 + 28 210 170269 21 48 60 66 1 0 35 chain 3043 chr1 249250621 + 7629289 7629459 HAL1-2a_MD 234 + 24 111 224151 9 43 0 12 31 0 3 2 0 7 8 2 28 12 11 15 chain 537861 chr1 249250621 + 7658008 7665870 L1PA4 6152 - 12 6130 3175 723 2 0 33 1 0 1610 0 1 153 1715 0 715 0 1 88 28 0 367 0 1 889 0 2 98 5 6 692 4 0 739 chain 132778 chr1 249250621 + 7660547 7662062 SVA_D 2077 - 0 2065 27463 99 0 4 432 0 352 138 0 136 151 0 40 75 0 40 585 22 0 13 chain 6214 chr1 249250621 + 7799917 7799994 THE1B 368 - 289 368 183461 60 0 2 17 chain 16346 chr1 249250621 + 7811762 7811986 MER75B 242 - 0 222 137353 15 1 0 11 5 0 63 0 4 129 chain 27831 chr1 249250621 + 7818713 7819015 AluYk4 311 + 0 302 93583 302 chain 27863 chr1 249250621 + 7849300 7849670 THE1B 368 + 0 368 93482 109 0 2 51 7 6 32 2 0 160 1 0 8 chain 2001 chr1 249250621 + 7850231 7850399 THE1C 375 - 0 168 96142 168 chain 13565 chr1 249250621 + 7850430 7850605 THE1C 375 - 196 375 146110 36 1 5 138 chain 109106 chr1 249250621 + 7850618 7852122 THE1C-int 1605 - 13 1589 34420 563 20 24 14 12 11 228 6 0 44 1 0 7 14 16 13 1 0 12 1 3 27 0 1 177 1 8 36 0 1 56 2 0 2 0 3 13 0 6 25 0 1 112 0 54 99 3 5 15 chain 10941 chr1 249250621 + 7852139 7852285 THE1C 375 - 0 152 156439 25 1 0 56 0 2 34 1 0 19 0 6 10 chain 2418 chr1 249250621 + 7852298 7852501 THE1C 375 - 168 375 96142 61 0 4 142 chain 4753 chr1 249250621 + 7859275 7859331 Tigger9b 617 - 64 120 197889 56 chain 12218 chr1 249250621 + 7879739 7879970 MER30 238 + 0 238 151351 17 24 24 66 6 0 15 16 32 35 3 0 49 chain 15058 chr1 249250621 + 7901080 7901289 MER30 238 - 0 219 141147 39 3 0 67 12 25 88 chain 3557 chr1 249250621 + 7905454 7905495 MER85 139 + 9 50 214387 41 chain 3361 chr1 249250621 + 7935440 7935478 THE1D 372 + 334 372 217867 38 chain 16028 chr1 249250621 + 7939819 7940031 L1MA4A 3247 + 583 794 138284 109 2 0 79 0 1 22 chain 14216 chr1 249250621 + 7968783 7969283 THE1B 368 - 62 360 143828 66 1 0 10 312 111 111 chain 23889 chr1 249250621 + 7984723 7985073 Tigger3b 1229 + 337 704 110968 100 1 2 39 16 31 37 1 0 22 2 0 15 0 2 35 0 2 82 chain 22408 chr1 249250621 + 7987166 7987571 LTR3A 482 + 23 420 118452 86 0 1 5 0 1 38 0 7 19 104 86 115 0 2 15 6 5 17 chain 3665 chr1 249250621 + 7988614 7988668 MER65A 464 + 0 71 212493 38 1 18 15 chain 4273 chr1 249250621 + 7990338 7990408 tRNA-Glu-GAG_ 72 - 0 72 203585 26 10 12 34 chain 74706 chr1 249250621 + 8012157 8012992 SVA_D 2077 + 55 898 46157 115 0 10 36 3 1 681 chain 54303 chr1 249250621 + 8013015 8013618 SVA_E 1901 + 851 1563 56157 51 0 33 90 1 78 48 2 1 411 chain 6792 chr1 249250621 + 8020819 8020907 MER84 505 - 401 505 179008 48 0 16 40 chain 8402 chr1 249250621 + 8055463 8055576 MER34A 573 - 432 545 168848 24 0 1 8 1 0 80 chain 29674 chr1 249250621 + 8095761 8096143 MLT2A1 477 + 0 385 85928 14 3 7 148 4 1 12 0 1 20 0 1 181 chain 12097 chr1 249250621 + 8108565 8108873 L1MA3 4352 + 4125 4352 151804 55 85 13 66 2 0 23 35 32 7 2 0 9 2 0 22 chain 65291 chr1 249250621 + 8109189 8109925 L1PA5 6144 - 6 744 50427 653 1 3 82 chain 26415 chr1 249250621 + 8125442 8125798 THE1B 368 - 0 368 98356 74 1 0 102 2 0 24 1 0 57 3 4 52 0 15 40 chain 34610 chr1 249250621 + 8129699 8130158 L1PA16 3655 - 65 521 76743 13 2 1 110 0 1 175 2 0 86 1 0 70 chain 3612 chr1 249250621 + 8135909 8136070 MER34C2 569 - 127 295 213465 5 1 0 30 102 110 23 chain 41603 chr1 249250621 + 8182690 8183231 MER41A 554 - 4 554 67151 75 1 6 25 0 4 131 12 13 97 1 0 199 chain 25131 chr1 249250621 + 8183949 8184239 AluSp 311 - 21 311 104120 290 chain 20634 chr1 249250621 + 8186383 8186691 THE1B 368 - 32 368 125179 93 35 45 29 1 0 4 1 5 105 0 15 40 chain 53125 chr1 249250621 + 8213119 8213872 LTR12 884 - 0 884 56943 90 0 1 213 18 19 79 24 25 70 1 0 4 0 1 5 2 0 149 0 132 61 2 0 35 chain 21952 chr1 249250621 + 8225695 8226031 THE1D 372 + 0 333 120417 165 0 5 10 54 46 107 chain 27627 chr1 249250621 + 8244915 8245287 THE1C 375 - 5 375 94274 20 1 0 164 1 2 64 6 3 33 0 1 83 chain 3190 chr1 249250621 + 8252196 8252235 MSTA 426 + 387 426 221096 39 chain 8456 chr1 249250621 + 8286081 8286192 MER30 238 + 131 238 168533 8 1 0 60 3 0 39 chain 25209 chr1 249250621 + 8322114 8322413 AluY 311 + 3 304 103686 123 0 2 176 chain 26331 chr1 249250621 + 8327784 8328145 THE1C 375 - 12 375 98693 14 7 5 161 1 0 44 0 4 31 5 6 98 chain 19876 chr1 249250621 + 8341439 8341758 THE1C 375 + 0 336 127569 89 0 1 33 12 16 46 0 2 7 45 55 87 chain 5338 chr1 249250621 + 8367412 8367477 MLT1B 390 - 6 71 191654 65 chain 2711 chr1 249250621 + 8372617 8372646 MER53 195 - 129 158 230057 29 chain 24623 chr1 249250621 + 8397093 8397456 THE1B 368 - 2 368 106868 54 1 2 7 2 0 63 1 0 10 1 0 16 1 5 9 7 10 21 1 0 169 chain 3854 chr1 249250621 + 8429527 8429573 U5 65 + 5 51 209561 46 chain 28365 chr1 249250621 + 8448377 8448678 AluYb8 318 - 17 318 91714 301 chain 4996 chr1 249250621 + 8491706 8491816 Tigger3b 1229 - 406 517 195189 9 0 1 13 33 34 44 1 0 10 chain 29577 chr1 249250621 + 8493609 8493919 AluYb8 318 - 8 318 86289 310 chain 22779 chr1 249250621 + 8500383 8500665 AluSc5 308 + 13 296 116682 47 0 1 68 1 0 145 4 5 17 chain 20140 chr1 249250621 + 8505745 8506010 L1PA7 6471 - 5 276 126710 7 0 7 47 10 11 74 2 0 125 chain 49677 chr1 249250621 + 8506018 8506735 L1P2 5180 - 3119 3721 59250 210 0 4 56 0 2 15 123 0 281 0 2 32 chain 9908 chr1 249250621 + 8506301 8506415 L1P2 5180 - 3406 3520 161029 114 chain 80797 chr1 249250621 + 8560454 8561386 SVA_D 2077 + 218 1558 43269 38 0 1 285 0 40 302 0 310 18 0 1 123 0 7 9 0 49 124 0 1 16 1 0 16 chain 27955 chr1 249250621 + 8561465 8561940 SVA_F 1814 + 620 1116 93145 41 73 3 57 0 41 13 1 0 13 26 59 9 1 0 30 0 2 48 0 1 10 0 15 119 0 1 34 chain 3341 chr1 249250621 + 8561506 8561564 SVA_F 1814 + 701 878 95816 35 0 39 6 0 80 17 chain 6629 chr1 249250621 + 8561969 8562060 SVA_E 1901 + 859 974 87641 21 0 1 4 15 38 51 chain 97362 chr1 249250621 + 8562060 8563147 SVA_E 1901 + 804 1885 37466 8 1 0 5 1 0 19 1 0 91 3 0 34 1 2 7 1 0 5 1 2 118 1 0 790 chain 30427 chr1 249250621 + 8572073 8572391 AluYb8 318 - 0 318 83621 318 chain 30132 chr1 249250621 + 8590733 8591049 AluYb8 318 - 2 318 84376 316 chain 4565 chr1 249250621 + 8628864 8628977 MLT2B3 573 + 491 573 200054 25 51 20 37 chain 3487 chr1 249250621 + 8758075 8758140 MER41B 635 - 88 154 215578 38 14 15 13 chain 22951 chr1 249250621 + 8787579 8787850 AluSc 308 - 37 308 115852 271 chain 4302 chr1 249250621 + 8789623 8789712 MER58A 224 + 122 210 203192 39 15 16 10 2 0 23 chain 14147 chr1 249250621 + 8801457 8801816 THE1D 372 + 16 352 144049 40 62 45 43 8 3 19 81 80 106 chain 23886 chr1 249250621 + 8825751 8826022 AluSc5 308 + 21 292 110985 271 chain 12025 chr1 249250621 + 8859735 8860257 MER30 238 + 37 238 152095 61 10 0 14 1 21 30 328 0 24 6 3 48 chain 26335 chr1 249250621 + 8878959 8879257 AluSp 311 - 13 311 98673 298 chain 24876 chr1 249250621 + 8880315 8880607 AluSp 311 - 6 300 105478 28 0 2 264 chain 23964 chr1 249250621 + 8889148 8889417 AluY 311 + 17 286 110542 269 chain 9699 chr1 249250621 + 8901698 8901843 L1PA8 5853 + 5704 5847 162089 34 7 6 17 2 1 85 chain 12046 chr1 249250621 + 8950421 8950625 MER51B 395 + 66 270 152005 75 30 30 74 1 0 7 4 5 13 chain 25007 chr1 249250621 + 8951133 8951420 AluSp 311 - 13 300 104747 42 1 0 8 0 1 236 chain 6639 chr1 249250621 + 8955078 8955155 LTR8 732 + 642 719 180169 77 chain 59495 chr1 249250621 + 8958366 8959154 LTR12 884 + 0 865 53111 53 39 0 29 25 0 54 0 26 103 0 113 159 6 8 320 chain 3618 chr1 249250621 + 8960079 8960128 MER34A1 583 + 389 437 213384 12 1 0 36 chain 9885 chr1 249250621 + 8960569 8960692 MER41B 635 - 315 438 161156 123 chain 13255 chr1 249250621 + 8961773 8962063 LTR47A 437 + 123 435 147266 23 33 16 20 6 39 33 11 10 13 19 25 46 8 9 78 chain 11409 chr1 249250621 + 8962747 8962925 MER30 238 + 37 229 154653 65 9 0 9 5 30 57 3 0 15 0 1 15 chain 15097 chr1 249250621 + 8967868 8968054 HERVK9-int 4720 - 4205 4385 141046 154 3 0 5 3 0 21 chain 18761 chr1 249250621 + 8968688 8968938 MER9a3 513 - 0 269 130799 79 0 1 40 11 30 105 1 0 14 chain 25102 chr1 249250621 + 8969430 8969727 AluSc 308 - 0 297 104277 297 chain 57001 chr1 249250621 + 8972231 8972847 SVA_D 2077 + 1462 2077 54528 597 1 0 18 chain 24243 chr1 249250621 + 8977107 8977406 AluSc5 308 + 2 296 108976 287 5 0 7 chain 6045 chr1 249250621 + 8984971 8985645 HERVFH21-int 991 + 586 954 184855 4 1 0 19 1 0 6 382 195 8 15 0 42 34 7 11 28 2 23 80 31 20 chain 39942 chr1 249250621 + 8998808 8999403 LTR61 567 - 0 566 69405 36 1 0 3 1 0 304 16 13 18 2 1 52 0 4 55 6 0 15 17 11 33 15 0 21 chain 9312 chr1 249250621 + 9014523 9014633 MER41A 554 + 430 540 164004 110 chain 25793 chr1 249250621 + 9042885 9043196 AluSc 308 + 0 308 100903 37 5 2 269 chain 23707 chr1 249250621 + 9053071 9053410 THE1B 368 - 17 368 111997 58 2 1 100 2 0 24 1 0 82 0 1 19 7 22 33 1 0 4 0 1 6 chain 22987 chr1 249250621 + 9080817 9081150 THE1B 368 + 0 368 115682 44 8 24 24 1 23 6 1 0 53 10 9 57 1 0 128 chain 17827 chr1 249250621 + 9095777 9096127 THE1B 368 - 12 368 133309 37 14 13 55 79 85 49 7 8 109 chain 25372 chr1 249250621 + 9135724 9136018 AluSq10 312 - 17 311 102825 294 chain 8137 chr1 249250621 + 9136709 9136810 LTR23 429 - 7 109 170296 10 0 1 91 chain 4000 chr1 249250621 + 9140937 9140993 LTR24C 604 + 548 604 207389 12 1 0 4 0 1 39 chain 18566 chr1 249250621 + 9143376 9143596 MER41E 591 + 0 230 131319 100 0 1 6 0 9 114 chain 24897 chr1 249250621 + 9143930 9144213 AluYf5 307 + 9 293 105370 196 5 6 82 chain 24195 chr1 249250621 + 9154397 9154687 AluSp 311 + 4 295 109246 120 0 1 170 chain 73356 chr1 249250621 + 9184318 9185190 MER11D 897 + 0 897 46856 328 12 5 241 0 23 165 1 13 8 3 0 114 chain 12358 chr1 249250621 + 9192257 9192491 L1MB7 1623 - 565 799 150806 13 0 3 5 1 0 38 9 8 71 34 37 9 4 0 50 chain 5672 chr1 249250621 + 9237672 9237742 MER2 342 - 130 200 188370 70 chain 22463 chr1 249250621 + 9268644 9268935 AluSp 311 + 11 291 118177 18 0 4 251 15 0 7 chain 5370 chr1 249250621 + 9286797 9286861 L1MB8 1703 + 788 852 191306 64 chain 6481 chr1 249250621 + 9299010 9299093 MER63B 433 - 203 286 181385 83 chain 20052 chr1 249250621 + 9414619 9414873 AluSx1 309 + 30 296 126969 113 3 0 7 0 3 12 3 15 116 chain 23638 chr1 249250621 + 9430866 9431137 AluSc 308 + 3 273 112369 254 1 0 16 chain 30306 chr1 249250621 + 9435072 9435471 MER83 447 + 0 408 83886 44 1 0 6 0 1 156 5 6 53 0 1 52 0 7 82 chain 31154 chr1 249250621 + 9449198 9450052 MER4A1_ 611 + 0 594 82248 101 355 28 67 0 2 5 0 1 11 0 1 29 12 76 29 8 7 132 19 14 33 10 11 29 1 5 13 chain 20668 chr1 249250621 + 9471903 9472264 THE1B 368 + 7 368 125077 6 2 0 27 11 16 32 34 35 49 1 0 20 9 7 86 9 8 75 chain 4386 chr1 249250621 + 9481770 9481819 MER63A 208 + 111 160 202132 49 chain 3735 chr1 249250621 + 9569103 9569175 L1MB8 1703 - 221 296 211379 46 3 0 5 6 12 12 chain 40258 chr1 249250621 + 9569244 9569791 MLT2A2 560 + 0 560 68933 37 1 3 6 1 0 179 1 2 174 4 15 86 1 3 15 6 0 30 0 4 6 chain 49485 chr1 249250621 + 9572365 9572948 LTR10C 591 + 0 584 59399 331 1 2 251 chain 29481 chr1 249250621 + 9576823 9577131 AluYa5 310 - 2 310 86711 308 chain 23561 chr1 249250621 + 9579437 9579721 AluY 311 + 11 297 112789 94 0 1 27 1 0 142 0 2 20 chain 32245 chr1 249250621 + 9585775 9586488 LTR2 463 - 0 456 80450 52 0 15 201 309 33 62 1 5 88 chain 8711 chr1 249250621 + 9587143 9587252 MER4A1 472 + 0 111 167140 14 0 2 95 chain 5802 chr1 249250621 + 9587407 9587507 MLT2A1 477 - 319 403 187134 19 21 5 60 chain 5525 chr1 249250621 + 9588112 9588176 MLT2A2 560 - 494 558 189794 64 chain 2947 chr1 249250621 + 9595294 9595325 U2 167 - 136 167 226137 31 chain 23539 chr1 249250621 + 9643793 9644068 AluY 311 + 25 298 112909 98 2 0 175 chain 21233 chr1 249250621 + 9679976 9680303 MER41A 554 + 220 554 123087 159 16 19 32 3 31 9 24 0 84 chain 16813 chr1 249250621 + 9681141 9681351 MER41A 554 - 342 554 136085 154 6 8 50 chain 6275 chr1 249250621 + 9716276 9716490 Tigger4a 237 - 0 235 182974 40 15 26 23 2 0 7 12 27 7 15 0 16 29 50 15 10 1 23 chain 36106 chr1 249250621 + 9723647 9724048 L1PA5 6144 - 4 405 74758 401 chain 5902 chr1 249250621 + 9726591 9726668 MER4D 903 - 261 345 186168 49 0 7 28 chain 21727 chr1 249250621 + 9737926 9738229 AluSq2 311 + 0 311 121295 41 18 17 32 0 7 31 1 3 180 chain 23689 chr1 249250621 + 9770856 9771131 AluSp 311 - 25 300 112088 275 chain 19043 chr1 249250621 + 9813089 9813399 MER1B 344 - 0 313 129992 32 41 48 178 13 9 46 chain 23621 chr1 249250621 + 9814644 9814919 AluSp 311 + 13 288 112463 275 chain 22969 chr1 249250621 + 9825166 9825457 AluSp 311 + 0 297 115755 47 5 11 239 chain 6646 chr1 249250621 + 9847819 9848022 L1MB3 1562 - 10 181 180125 22 7 6 16 32 29 12 1 0 26 49 22 38 chain 53324 chr1 249250621 + 9940032 9940719 L1PA8 5853 - 0 679 56817 43 0 4 10 5 1 35 1 0 16 3 2 47 3 2 11 1 0 73 2 0 45 1 0 300 1 0 90 chain 23518 chr1 249250621 + 9988087 9988374 AluSp 311 + 0 286 113027 27 3 0 131 0 1 105 0 1 21 chain 25465 chr1 249250621 + 9993027 9993341 AluY 311 + 0 311 102375 43 7 4 264 chain 18830 chr1 249250621 + 10007376 10007620 7SK 245 + 1 244 130575 130 8 7 106 chain 12081 chr1 249250621 + 10063525 10063719 MER66B 489 + 234 445 151870 69 0 7 16 31 41 78 chain 25083 chr1 249250621 + 10064123 10064427 AluSp 311 - 4 311 104388 25 0 1 223 0 1 32 0 1 24 chain 23703 chr1 249250621 + 10070641 10070916 AluSp 311 - 11 286 112017 102 0 1 20 1 0 152 chain 23436 chr1 249250621 + 10071978 10072291 AluSp 311 + 1 304 113440 107 1 0 17 26 17 162 chain 5891 chr1 249250621 + 10074123 10074214 MER21B 843 + 133 235 186272 67 8 19 16 chain 35947 chr1 249250621 + 10076649 10078007 HUERS-P1-int 2401 - 1042 1746 74961 10 2 0 24 1 0 50 19 14 22 2 0 79 6 3 12 676 61 21 5 1 37 2 0 8 1 0 12 1 0 166 2 0 6 17 8 73 61 54 43 chain 13958 chr1 249250621 + 10078443 10078616 MER51A 677 + 0 176 144719 124 0 1 25 0 2 24 chain 15789 chr1 249250621 + 10078749 10078959 MER41B 635 + 64 275 138986 28 1 0 36 0 1 56 3 4 86 chain 120329 chr1 249250621 + 10088443 10089824 SVA_D 2077 + 58 2074 30931 107 1 21 365 0 40 252 7 443 29 0 1 17 0 143 591 5 0 7 chain 24990 chr1 249250621 + 10097085 10097382 AluSp 311 - 15 309 104856 5 3 0 289 chain 37345 chr1 249250621 + 10142711 10143261 L1PA8 5853 - 0 554 73031 91 1 0 20 1 0 47 0 1 4 27 23 55 6 4 36 0 3 5 4 0 86 1 0 4 0 1 4 1 5 57 2 12 44 2 0 52 chain 23285 chr1 249250621 + 10160626 10160900 AluSp 311 - 26 300 114279 274 chain 23773 chr1 249250621 + 10178562 10178838 AluSp 311 - 12 288 111639 276 chain 22525 chr1 249250621 + 10217559 10217836 AluSc 308 + 4 282 117909 201 1 2 75 chain 17173 chr1 249250621 + 10251017 10251249 MER30 238 + 0 238 135101 108 4 13 78 3 0 39 chain 26254 chr1 249250621 + 10275231 10275533 AluSp 311 - 9 311 99004 302 chain 25592 chr1 249250621 + 10279982 10280279 AluSp 311 + 4 299 101769 235 2 0 60 chain 22444 chr1 249250621 + 10320650 10320943 AluSq2 311 + 10 302 118277 124 12 11 157 chain 8205 chr1 249250621 + 10320945 10321704 Tigger3b 1229 - 569 752 169929 65 593 17 12 9 7 23 13 17 35 2 0 7 chain 4024 chr1 249250621 + 10331013 10331061 L1ME1 1623 - 365 413 207015 48 chain 9996 chr1 249250621 + 10359023 10359128 U6 107 + 0 105 160596 105 chain 11001 chr1 249250621 + 10406858 10407064 MER20 218 - 0 218 156200 26 0 6 44 11 12 39 12 13 43 17 21 14 chain 20276 chr1 249250621 + 10449930 10450198 AluSp 311 + 11 275 126292 99 2 1 21 3 0 143 chain 9077 chr1 249250621 + 10485451 10485709 LTR5_Hs 974 + 0 262 44253 17 0 4 241 chain 107696 chr1 249250621 + 10485712 10486980 LTR12C 1709 - 0 1709 34800 167 0 102 92 0 8 112 0 4 65 0 47 98 0 278 126 1 2 579 0 1 28 chain 24698 chr1 249250621 + 10486981 10487683 LTR5_Hs 974 + 262 974 44253 22 1 2 97 0 1 85 0 1 345 0 2 5 5 12 37 2 0 103 chain 22008 chr1 249250621 + 10499532 10499808 AluSg7 307 + 10 291 120198 37 3 9 76 1 0 159 chain 22971 chr1 249250621 + 10561406 10561657 AluYf4 310 - 55 310 115747 121 0 4 130 chain 5250 chr1 249250621 + 10586753 10586889 Tigger4a 237 + 16 139 192525 31 62 49 43 chain 22348 chr1 249250621 + 10623374 10623695 AluSp 311 + 0 295 118707 134 42 11 15 0 5 130 chain 23816 chr1 249250621 + 10630390 10630677 AluSc 308 - 13 297 111387 5 2 0 211 1 0 68 chain 4364 chr1 249250621 + 10685123 10685173 MIRb 242 + 82 132 202398 50 chain 4294 chr1 249250621 + 10879213 10879265 MIRb 242 + 71 123 203311 52 chain 3852 chr1 249250621 + 10913831 10913920 HAL1-2a_MD 234 + 66 125 209633 12 15 0 9 12 0 33 3 0 5 chain 24171 chr1 249250621 + 10914149 10915235 MER83 447 + 0 440 109372 122 20 58 123 716 35 66 20 17 19 chain 3716 chr1 249250621 + 10919792 10919837 MIRb 242 - 113 158 211687 45 chain 3895 chr1 249250621 + 10947686 10947756 MER96B 391 + 221 290 208940 39 9 8 22 chain 7983 chr1 249250621 + 10984298 10984399 L1MB5 1630 - 1322 1423 171149 101 chain 4511 chr1 249250621 + 10991109 10991164 L1MB3 1562 + 1264 1319 200656 55 chain 13919 chr1 249250621 + 10993369 10993569 MER30 238 + 0 234 144860 15 13 31 60 4 20 108 chain 24741 chr1 249250621 + 11045315 11045603 AluSg7 307 - 9 297 106221 288 chain 21999 chr1 249250621 + 11049905 11050257 THE1B 368 - 0 368 120235 115 45 55 10 13 0 16 1 0 29 0 4 24 0 1 55 0 15 44 chain 21853 chr1 249250621 + 11054513 11054783 AluSc5 308 - 25 297 120807 44 14 16 212 chain 3358 chr1 249250621 + 11059920 11059958 HY1 111 - 0 38 217891 38 chain 25712 chr1 249250621 + 11091298 11091603 AluY 311 + 0 300 101240 126 5 0 174 chain 30253 chr1 249250621 + 11096280 11096597 AluYb8 318 + 1 318 84058 317 chain 24322 chr1 249250621 + 11118335 11118640 AluSp 311 + 0 304 108534 73 7 6 225 chain 20807 chr1 249250621 + 11121253 11121534 AluSc 308 + 24 297 124575 23 7 1 209 14 12 28 chain 28036 chr1 249250621 + 11138317 11138612 AluYa5 310 - 14 309 92873 295 chain 260755 chr1 249250621 + 11143683 11146601 L1PA3long 6157 - 0 2928 15653 5 3 0 840 1 5 292 2 0 138 2 1 519 0 8 1079 4 8 33 chain 46475 chr1 249250621 + 11146601 11147106 L1PA3long 6157 + 2718 3223 61412 505 chain 90189 chr1 249250621 + 11164652 11165711 MER11C 1089 + 1 1073 39580 774 0 8 26 1 2 109 8 7 66 0 2 18 0 3 57 chain 4200 chr1 249250621 + 11175750 11175825 MER58A 224 + 141 215 204539 39 11 10 25 chain 5360 chr1 249250621 + 11212406 11212470 U6 107 + 0 65 191428 51 0 1 13 chain 534909 chr1 249250621 + 11220863 11227312 L1PA5 6144 + 0 6144 3605 83 0 1 1349 0 3 92 3 0 785 2 1 256 0 3 630 1 0 50 304 0 18 12 6 301 4 0 304 7 9 270 0 4 591 0 1 246 2 0 389 0 3 289 5 4 456 chain 82261 chr1 249250621 + 11309497 11310422 SVA_D 2077 - 21 1376 42652 514 0 225 279 1 4 81 0 122 26 0 80 24 chain 21581 chr1 249250621 + 11321277 11321544 AluY 311 + 37 298 121842 89 8 0 14 2 4 154 chain 19166 chr1 249250621 + 11329147 11329369 L1PA6 6164 - 3 225 129627 222 chain 131092 chr1 249250621 + 11365136 11366663 SVA_C 1631 - 8 1631 27835 601 0 16 35 0 1 8 22 27 12 0 1 6 2 0 5 12 61 309 0 3 330 6 14 159 0 15 20 chain 43180 chr1 249250621 + 11420232 11420784 MER41A 554 - 0 554 65197 81 0 5 123 1 0 25 0 2 129 8 4 185 chain 4771 chr1 249250621 + 11437328 11437431 MLT1J2 417 + 43 143 197682 27 3 4 11 25 21 37 chain 87135 chr1 249250621 + 11470705 11471899 Tigger1 2417 + 1170 2356 40723 210 0 3 38 8 6 183 0 1 254 21 0 77 1 14 20 0 3 17 3 0 22 1 0 33 0 1 204 3 1 99 chain 110892 chr1 249250621 + 11479333 11480624 L1PA6 6164 - 2 1306 33967 335 0 1 49 3 4 363 0 3 91 0 5 111 0 3 339 chain 4106 chr1 249250621 + 11545031 11545113 MADE1 96 - 0 96 205832 19 9 7 11 1 17 42 chain 7323 chr1 249250621 + 11553818 11553905 MLT2B4 540 - 453 540 175286 87 chain 8941 chr1 249250621 + 11557747 11557873 L1PB1 5432 - 151 273 165917 44 1 0 16 2 1 51 2 0 10 chain 25320 chr1 249250621 + 11570857 11571216 THE1A 353 - 0 353 103118 39 18 13 191 6 5 105 chain 128662 chr1 249250621 + 11571216 11572808 THE1A-int 1579 - 0 1579 28406 8 0 1 56 0 1 287 18 10 617 25 18 581 chain 26857 chr1 249250621 + 11572808 11573158 THE1A 353 - 0 345 96779 225 13 9 8 1 0 103 chain 34259 chr1 249250621 + 11635829 11636272 MLT2A1 477 - 0 477 77265 34 5 0 4 0 1 12 5 43 145 0 1 37 0 1 19 0 1 9 4 1 169 chain 116331 chr1 249250621 + 11668627 11669977 LTR12C 1709 + 0 1709 32329 35 4 0 342 1 43 374 8 324 106 0 4 211 0 1 269 chain 24512 chr1 249250621 + 11743756 11744044 AluSp 311 + 10 297 107482 261 1 0 26 chain 17630 chr1 249250621 + 11749675 11749906 MER41A 554 + 318 554 133909 7 2 0 102 1 0 29 0 8 90 chain 23391 chr1 249250621 + 11766999 11767263 AluYc 301 + 11 277 113692 109 0 2 155 chain 24399 chr1 249250621 + 11803626 11803911 AluSp 311 - 15 300 108079 285 chain 46991 chr1 249250621 + 11804714 11805598 MER41A 554 - 0 553 61221 164 331 0 389 chain 4789 chr1 249250621 + 11806691 11806750 MIR 256 + 74 133 197474 59 chain 24925 chr1 249250621 + 11843315 11843592 AluSp 311 - 23 300 105188 277 chain 12488 chr1 249250621 + 11890476 11890640 MER2 342 + 132 295 150300 49 1 0 29 1 0 36 0 1 48 chain 2947 chr1 249250621 + 11917850 11917881 MIRc 230 + 97 128 226158 31 chain 4647 chr1 249250621 + 11965968 11966032 MLT1A0 366 - 50 110 199097 23 4 0 37 chain 5909 chr1 249250621 + 11968208 11968272 U5 65 + 0 64 186095 64 chain 5482 chr1 249250621 + 11969920 11969983 U5 65 - 1 64 190195 63 chain 78507 chr1 249250621 + 11972469 11973424 LTR13A 966 - 0 957 44268 53 7 8 138 5 0 149 3 0 232 1 0 190 0 9 58 0 1 119 chain 23596 chr1 249250621 + 11993651 11993930 AluSp 311 + 10 290 112601 9 0 1 270 chain 23749 chr1 249250621 + 12011704 12011967 AluY 311 + 10 274 111778 122 0 1 141 chain 22415 chr1 249250621 + 12019978 12020315 AluSg7 307 - 3 296 118408 8 2 0 80 40 0 41 3 0 43 0 1 120 chain 128681 chr1 249250621 + 12067831 12069302 SVA_C 1631 - 9 1631 28395 32 0 16 570 1 3 48 0 43 46 1 0 37 6 9 15 1 0 47 0 37 90 0 39 230 0 8 331 0 5 16 chain 4927 chr1 249250621 + 12076451 12076508 LTR51 675 + 260 317 195964 57 chain 3740 chr1 249250621 + 12081569 12081611 MIR 256 - 127 169 211321 42 chain 97164 chr1 249250621 + 12102758 12103824 SVA_D 2077 + 62 1655 37521 498 0 40 303 1 135 54 0 353 210 chain 12611 chr1 249250621 + 12156364 12156612 MER30 238 - 0 238 149805 48 28 26 15 15 0 31 12 15 76 4 8 19 chain 22635 chr1 249250621 + 12176050 12176327 AluSp 311 - 24 301 117400 277 chain 19049 chr1 249250621 + 12196946 12197159 SVA_B 1603 - 0 211 129974 6 2 0 205 chain 16358 chr1 249250621 + 12281703 12282068 THE1B 368 - 0 368 137317 25 37 37 49 79 84 4 1 0 55 10 9 105 chain 22002 chr1 249250621 + 12284263 12284562 THE1B 368 - 65 368 120221 63 15 13 13 0 4 9 0 3 29 1 0 169 chain 27083 chr1 249250621 + 12286464 12286762 AluYk4 311 + 0 296 95992 132 2 0 164 chain 7454 chr1 249250621 + 12306399 12306546 Tigger4a 237 + 10 163 174427 18 2 9 74 8 0 10 16 23 19 chain 8252 chr1 249250621 + 12360566 12360665 L1PA16 3655 - 153 252 169672 99 chain 31597 chr1 249250621 + 12414938 12415364 MER57A1 433 - 0 433 81496 141 3 5 7 0 1 108 1 0 114 6 8 18 0 3 28 chain 28176 chr1 249250621 + 12421455 12421750 AluYa5 310 - 15 310 92386 295 chain 32615 chr1 249250621 + 12449009 12449416 MLT2A1 477 - 5 477 79829 14 1 0 30 0 53 169 0 8 24 1 5 26 0 1 142 chain 456593 chr1 249250621 + 12449441 12456008 HERVL-int 5654 - 69 5654 8524 131 0 1 170 0 1 59 9 0 92 0 1 291 0 1 185 9 18 213 0 1 78 0 1 374 0 2 41 0 1 35 0 1 16 4 0 415 0 1 49 4 0 20 1002 3 317 0 2 145 8 11 282 1 0 154 2 0 152 0 10 363 8 9 67 0 1 386 2 1 48 12 13 366 0 4 178 0 11 140 0 1 17 1 4 85 1 0 103 14 0 405 3 0 8 2 1 100 chain 25349 chr1 249250621 + 12496716 12497015 AluSp 311 - 9 303 102962 9 5 0 285 chain 25219 chr1 249250621 + 12583191 12583477 AluSp 311 - 16 302 103642 286 chain 41225 chr1 249250621 + 12592396 12592944 MLT2A2 560 - 0 559 67617 90 5 10 47 0 11 222 1 0 149 4 0 30 chain 28609 chr1 249250621 + 12665560 12667833 HSMAR2 1300 + 3 1238 90701 79 0 7 147 4 0 74 1843 803 95 1 0 30 chain 8759 chr1 249250621 + 12697295 12697406 MER57A1 433 - 0 111 166872 111 chain 3289 chr1 249250621 + 12706307 12706343 MIR 256 + 93 129 219182 36 chain 4073 chr1 249250621 + 12718569 12718616 MER41E 591 - 544 591 206289 47 chain 56627 chr1 249250621 + 12731651 12732395 L1PA8 5853 - 886 1631 54628 142 11 12 224 2 1 65 0 2 5 23 21 148 0 1 124 chain 60276 chr1 249250621 + 12732395 12733235 L1PA8 5853 + 5024 5849 52694 70 0 1 299 12 1 95 0 1 73 1 0 28 8 9 8 2 0 68 5 4 7 1 0 52 2 1 19 1 0 89 chain 3066 chr1 249250621 + 12733970 12734238 LTR41 747 + 105 373 223638 36 214 214 18 chain 31732 chr1 249250621 + 12736031 12736476 MLT2A1 477 - 0 477 81276 49 17 50 180 3 4 10 0 1 13 5 2 168 chain 115395 chr1 249250621 + 12741757 12743061 L1PA4 6152 + 4835 6143 32644 238 0 1 226 0 1 128 0 1 556 5 6 151 chain 15933 chr1 249250621 + 12756675 12756881 Tigger7 736 + 261 480 138571 69 0 14 89 1 0 47 chain 33397 chr1 249250621 + 12763945 12764436 LTR10F 562 - 0 562 78569 44 0 2 6 7 12 131 0 1 4 1 0 90 0 110 21 46 0 141 chain 73210 chr1 249250621 + 12765237 12766105 MER11D 897 + 0 897 46920 502 1 3 64 0 1 4 0 23 184 1 2 21 0 2 91 chain 174615 chr1 249250621 + 12768150 12771150 HERVIP10F-int 4088 - 1022 3870 21526 60 25 22 526 1 0 134 2 1 17 1 0 52 0 1 19 1 0 84 1 0 65 1 0 15 6 5 16 0 2 377 18 15 9 4 3 32 1 0 61 2 1 19 7 5 51 0 2 10 1 0 30 1 0 23 8 6 11 1 0 14 21 14 8 1 0 8 12 8 131 1 0 41 1 0 14 1 0 23 2 6 22 8 5 6 1 0 5 1 0 13 1 0 16 1 0 3 2 0 41 1 0 30 1 0 7 4 1 5 1 0 20 1 0 4 14 6 5 1 0 8 1 0 20 1 0 11 1 0 26 1 0 5 1 0 59 1 0 8 1 0 32 4 2 4 1 0 47 1 0 6 2 0 28 1 0 5 2 1 19 1 0 37 1 0 7 25 22 21 1 0 31 1 0 18 122 106 29 2 0 7 104 63 7 1 0 21 1 0 12 4 2 6 3 0 9 10 6 12 14 8 13 chain 289398 chr1 249250621 + 12790708 12794205 L1PA7 6471 - 126 3634 14059 114 0 1 528 0 2 13 4 5 61 1 0 76 1 2 717 0 1 57 12 13 109 7 8 251 6 5 63 0 2 481 6 0 112 0 1 174 8 12 51 2 1 184 1 0 351 0 6 107 chain 22595 chr1 249250621 + 12803132 12803798 LTR51 675 + 0 392 117603 42 0 4 60 346 44 24 10 34 184 chain 5472 chr1 249250621 + 12822981 12823040 MER30 238 - 11 70 190285 59 chain 284390 chr1 249250621 + 12862101 12865624 L1PA7 6471 - 17 3582 14393 235 1 0 79 0 3 402 16 5 50 8 7 52 1 0 666 0 1 179 1 13 40 6 7 32 0 1 197 0 2 474 1 0 57 1 0 49 0 1 4 0 25 40 1 0 4 0 1 159 0 1 120 0 4 15 2 1 143 3 11 485 chain 527699 chr1 249250621 + 12873139 12879626 L1PA4 6152 - 9 6145 4431 330 0 1 434 22 0 1059 1 2 47 0 6 325 0 1 1099 332 0 125 1 0 1478 1 0 618 4 0 611 chain 15704 chr1 249250621 + 12876611 12876788 L1PA4 6152 + 5801 5978 139251 177 chain 24971 chr1 249250621 + 12898059 12898327 AluYa5 310 + 42 310 104951 268 chain 5637 chr1 249250621 + 12905401 12905473 MER65A 464 + 286 357 188693 11 1 0 60 chain 69898 chr1 249250621 + 12906130 12906890 L1PA3long 6157 + 5128 5888 48437 760 chain 266158 chr1 249250621 + 12927699 12931002 L1PA7 6471 - 17 3324 15383 215 1 13 4 1 0 82 0 3 402 16 5 109 1 0 78 1 0 3 0 2 183 2 1 638 0 1 32 0 1 1438 19 19 78 chain 5418 chr1 249250621 + 12959836 12959927 MER65A 464 + 289 394 190818 9 1 0 59 10 25 12 chain 113164 chr1 249250621 + 12962192 12963495 SVA_D 2077 + 0 2056 33328 13 5 0 12 5 0 528 0 233 65 0 40 25 1 490 38 0 1 611 chain 463404 chr1 249250621 + 12964978 12970370 L1PA4 6152 + 12 6152 8276 306 0 1 1493 1 0 128 1 2 527 108 0 1469 0 1 1109 7 862 237 1 0 5 chain 6989 chr1 249250621 + 12967463 12967541 LTR12C 1709 - 338 416 177551 78 chain 50245 chr1 249250621 + 12982480 12983134 L1PA7 6471 + 5800 6457 58831 37 1 0 440 0 5 31 9 0 7 0 8 129 chain 17530 chr1 249250621 + 12994962 12995180 L1PA4 6152 - 9 231 134182 145 1 6 66 1 0 5 chain 39331 chr1 249250621 + 13018646 13019118 LTR7Y 441 + 0 441 70282 165 31 0 276 chain 41594 chr1 249250621 + 13021121 13022969 MER4E1 777 + 0 769 67161 17 1 2 24 11 15 11 6 7 25 0 1 60 1 0 3 0 1 158 14 19 199 1228 137 90 chain 266591 chr1 249250621 + 13041068 13044367 L1PA7 6471 - 17 3324 15359 215 1 13 4 1 0 82 0 3 402 16 5 109 1 0 78 1 0 3 0 2 822 0 1 32 0 1 1103 0 3 83 1 0 7 1 2 240 19 19 78 chain 15155 chr1 249250621 + 13044510 13044687 L1PA7 6471 + 6120 6297 140895 177 chain 17530 chr1 249250621 + 13105295 13105513 L1PA4 6152 - 9 231 134181 145 1 6 66 1 0 5 chain 4139 chr1 249250621 + 13105513 13105560 L1PA4 6152 + 5883 5930 205370 47 chain 39879 chr1 249250621 + 13128967 13129407 LTR7Y 441 + 0 441 69489 323 0 1 117 chain 5637 chr1 249250621 + 13177352 13177424 MER65A 464 + 286 357 188692 11 1 0 60 chain 68719 chr1 249250621 + 13180992 13181846 LTR5B 1012 + 0 994 48937 123 0 14 122 0 1 229 1 0 258 0 2 5 0 124 116 chain 15176 chr1 249250621 + 13204370 13204678 HERV3-int 2824 - 158 431 140839 7 1 0 27 3 0 17 1 0 21 5 2 37 18 14 9 4 0 10 29 11 94 1 0 24 chain 5026 chr1 249250621 + 13211991 13212053 L1MC1 2226 + 1778 1840 194867 62 chain 15155 chr1 249250621 + 13322531 13322708 L1PA7 6471 - 174 351 140896 177 chain 11843 chr1 249250621 + 13322708 13322849 L1PA4 6152 + 6011 6152 152856 141 chain 268569 chr1 249250621 + 13322851 13326150 L1PA7 6471 + 3147 6454 15257 337 1 2 7 1 0 83 0 3 1103 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 39809 chr1 249250621 + 13344244 13346118 MER4E1 777 - 8 777 69619 90 1213 90 33 8 14 149 64 69 222 0 1 25 6 7 11 11 15 24 1 2 17 chain 39545 chr1 249250621 + 13348120 13348592 LTR7Y 441 - 0 441 69963 276 31 0 165 chain 4139 chr1 249250621 + 13372010 13372057 L1PA4 6152 - 222 269 205371 47 chain 17530 chr1 249250621 + 13372057 13372275 L1PA4 6152 + 5921 6143 134180 5 1 0 66 1 6 145 chain 50314 chr1 249250621 + 13384080 13384734 L1PA7 6471 - 14 671 58779 133 6 5 37 0 5 440 1 0 37 chain 463942 chr1 249250621 + 13396851 13402252 L1PA4 6152 - 0 6140 8261 5 2 0 237 7 862 1109 0 1 1455 114 0 541 1 0 132 1 0 1491 0 1 306 chain 6989 chr1 249250621 + 13399681 13399759 LTR12C 1709 + 1293 1371 177550 78 chain 112517 chr1 249250621 + 13403731 13405037 SVA_D 2077 - 18 2077 33531 620 0 1 32 0 404 9 0 2 29 0 356 581 5 0 12 5 0 13 chain 5353 chr1 249250621 + 13407323 13407392 MER65A 464 - 107 175 191511 59 1 0 9 chain 172894 chr1 249250621 + 13433282 13435655 SVA_E 1901 + 11 1901 21721 142 1 0 664 255 0 41 48 0 65 53 0 51 126 0 34 1 0 363 0 1 529 chain 15973 chr1 249250621 + 13434090 13434344 SVA_E 1901 + 817 1242 97237 14 32 203 61 1 0 46 12 13 88 chain 1661 chr1 249250621 + 13434602 13434630 SVA_E 1901 + 1023 1051 94935 28 chain 5102 chr1 249250621 + 13434630 13434727 SVA_E 1901 + 830 927 158862 97 chain 11712 chr1 249250621 + 13438691 13438832 L1PA4 6152 + 6011 6152 153417 141 chain 270749 chr1 249250621 + 13438834 13442136 L1PA7 6471 + 3147 6454 15149 1535 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 80210 chr1 249250621 + 13466828 13467809 LTR5B 1012 + 0 994 43502 128 1 14 346 1 0 420 0 1 85 chain 48986 chr1 249250621 + 13489003 13490405 MER4E1 777 - 18 777 59761 175 696 42 199 14 19 248 6 7 11 11 15 24 1 2 17 chain 8651 chr1 249250621 + 13499905 13500000 SVA_E 1901 - 0 95 167468 95 chain 115423 chr1 249250621 + 13500000 13501307 SVA_D 2077 - 94 2019 32636 145 1 2 378 4 542 13 1 0 104 0 80 661 chain 30077 chr1 249250621 + 13522618 13522999 LTR12F 595 - 11 560 84576 218 1 2 125 0 167 37 chain 22579 chr1 249250621 + 13527096 13527376 AluSc 308 + 9 285 117675 47 8 4 225 chain 106185 chr1 249250621 + 13538515 13540017 LTR12C 1709 - 0 1707 35215 84 1 0 85 0 101 211 11 4 17 24 0 80 0 47 106 44 6 131 1 0 27 0 120 216 5 4 6 0 5 127 1 2 33 10 1 37 0 3 205 13 22 27 chain 101214 chr1 249250621 + 13544709 13546006 LTR12C 1709 + 0 1709 36459 234 1 0 44 13 20 40 3 46 80 1 0 6 11 1 178 0 280 183 1 0 5 3 1 106 11 4 141 1 5 22 0 102 60 1 0 69 1 0 82 chain 10238 chr1 249250621 + 13556061 13556212 MER30 238 + 0 171 159432 108 5 19 25 2 8 11 chain 3499 chr1 249250621 + 13556636 13556746 MLT1J 494 + 12 120 215369 36 55 53 19 chain 464287 chr1 249250621 + 13617648 13623049 L1PA4 6152 - 0 6140 8246 5 2 0 237 7 862 1109 0 1 1455 114 0 541 1 0 132 1 0 1491 0 1 306 chain 6989 chr1 249250621 + 13620478 13620556 LTR12C 1709 + 1293 1371 177549 78 chain 112517 chr1 249250621 + 13624528 13625834 SVA_D 2077 - 18 2077 33530 620 0 1 32 0 404 9 0 2 29 0 356 581 5 0 12 5 0 13 chain 5353 chr1 249250621 + 13628120 13628189 MER65A 464 - 107 175 191510 59 1 0 9 chain 173584 chr1 249250621 + 13654076 13656498 SVA_E 1901 + 11 1901 21638 142 1 0 664 528 0 110 3 0 31 2 1 412 0 1 529 chain 19973 chr1 249250621 + 13654884 13655411 SVA_E 1901 + 817 989 80942 14 447 92 66 chain 28407 chr1 249250621 + 13654934 13655306 SVA_F 1814 + 664 1271 91551 41 2 122 28 1 0 33 11 126 160 1 2 95 chain 11712 chr1 249250621 + 13659534 13659675 L1PA4 6152 + 6011 6152 153416 141 chain 270618 chr1 249250621 + 13659677 13662979 L1PA7 6471 + 3147 6454 15156 1535 0 1 32 0 1 820 0 2 5 1 0 78 1 0 109 16 5 402 0 3 82 1 0 4 1 13 215 chain 80088 chr1 249250621 + 13687664 13688645 LTR5B 1012 + 0 994 43545 128 1 14 346 1 0 420 0 1 85 chain 47644 chr1 249250621 + 13709834 13711236 MER4E1 777 - 18 777 60740 153 13 0 9 696 55 199 14 19 248 6 7 11 11 15 24 1 2 17 chain 124084 chr1 249250621 + 13720738 13722139 SVA_D 2077 - 0 2019 29673 239 1 2 378 4 542 13 1 0 98 0 80 667 chain 30208 chr1 249250621 + 13743457 13743838 LTR12F 595 - 11 560 84170 218 1 2 125 0 167 37 chain 22579 chr1 249250621 + 13747956 13748236 AluSc 308 + 9 285 117674 47 8 4 225 chain 106185 chr1 249250621 + 13759374 13760876 LTR12C 1709 - 0 1707 35214 84 1 0 85 0 101 211 11 4 17 24 0 80 0 47 106 44 6 131 1 0 27 0 120 216 5 4 6 0 5 127 1 2 33 10 1 37 0 3 205 13 22 27 chain 101214 chr1 249250621 + 13765568 13766865 LTR12C 1709 + 0 1709 36458 234 1 0 44 13 20 40 3 46 80 1 0 6 11 1 178 0 280 183 1 0 5 3 1 106 11 4 141 1 5 22 0 102 60 1 0 69 1 0 82 chain 39835 chr1 249250621 + 13776122 13776570 L1PA4 6152 + 5688 6136 69569 448 chain 10605 chr1 249250621 + 13780305 13780451 MER30 238 + 0 161 157803 107 5 20 34 chain 3499 chr1 249250621 + 13780879 13780989 MLT1J 494 + 12 120 215368 36 55 53 19 chain 24665 chr1 249250621 + 13784671 13784965 AluSp 311 + 10 303 106639 13 1 0 280 chain 12446 chr1 249250621 + 13785970 13786154 MER44A 345 + 90 282 150477 11 0 6 7 1 0 60 7 10 98 chain 8709 chr1 249250621 + 13826302 13826419 MER4A1_ 611 + 0 122 167151 21 4 9 92 chain 9375 chr1 249250621 + 13861588 13861722 L1MB5 1630 - 314 452 163683 69 14 18 51 chain 4935 chr1 249250621 + 13886087 13886145 MER44B 551 - 97 155 195875 58 chain 3734 chr1 249250621 + 13886263 13886343 LTR10F 562 + 147 202 211408 34 26 1 20 chain 27824 chr1 249250621 + 13887335 13887706 LTR7B 505 + 0 488 93610 105 0 10 56 14 81 33 1 0 26 0 41 136 chain 43178 chr1 249250621 + 13890602 13891241 HERVH-int 3825 + 3186 3825 65200 53 49 53 6 5 0 105 0 2 21 23 23 175 1 0 201 chain 26468 chr1 249250621 + 13893602 13893989 LTR7B 505 + 0 505 98174 107 1 11 49 21 90 54 0 41 89 15 13 51 chain 206965 chr1 249250621 + 13896148 13899157 HERVIP10FH-int 2884 + 146 2876 18721 20 0 2 40 7 0 190 5 0 88 0 3 51 0 1 38 2 0 48 1 0 94 0 1 111 2 1 4 0 1 94 0 2 190 0 3 252 4 1 7 3 0 11 1 0 9 1 0 60 4 0 126 1 0 19 58 39 14 20 3 43 23 10 37 16 5 15 5 4 267 1 0 199 1 2 10 14 13 365 1 0 66 1 0 51 4 3 12 1 0 14 10 4 35 209 22 10 2 0 15 2 0 5 chain 36635 chr1 249250621 + 13899217 13899690 LTR10F 562 + 0 562 74051 81 0 5 80 7 0 18 0 93 200 8 6 79 chain 25901 chr1 249250621 + 13906061 13906355 AluSp 311 - 7 301 100430 294 chain 18740 chr1 249250621 + 13913290 13913549 AluSx4 309 + 10 285 130857 16 4 18 120 9 10 83 0 1 27 chain 25826 chr1 249250621 + 13919038 13919344 AluSp 311 - 6 311 100762 130 0 1 46 1 0 3 1 0 125 chain 3558 chr1 249250621 + 13958496 13958540 MADE2 80 - 0 43 214362 36 1 0 7 chain 92317 chr1 249250621 + 13958614 13959715 MER11C 1089 - 10 1089 38877 260 28 5 142 1 0 80 0 1 17 12 11 200 0 1 112 0 1 249 chain 12275 chr1 249250621 + 13969128 13969356 MSTB1 431 - 0 246 151094 15 0 1 79 9 22 24 39 37 39 1 7 22 chain 97815 chr1 249250621 + 13969356 13970973 HSMAR1 1287 - 1 1287 37327 520 2 0 15 22 9 84 314 0 88 22 22 216 0 3 139 1 4 61 9 1 124 chain 151710 chr1 249250621 + 13983865 13985572 SVA_D 2077 + 13 2074 24373 75 1 4 266 2 1 304 0 77 147 0 183 233 0 98 141 1 0 521 5 0 11 chain 29851 chr1 249250621 + 13985729 13986072 LTR14A 344 + 3 344 85275 213 2 0 128 chain 33368 chr1 249250621 + 13988463 13988901 MER57A1 433 + 0 433 78626 131 6 0 154 1 2 146 chain 58142 chr1 249250621 + 13995984 13996674 L1PA8 5853 - 0 683 53906 93 1 0 19 2 1 49 1 0 12 1 0 71 2 0 44 1 0 394 chain 23651 chr1 249250621 + 13997077 13997369 AluSp 311 + 0 286 112302 130 5 0 27 1 0 129 chain 25408 chr1 249250621 + 14005076 14005428 THE1B 368 - 0 356 102644 65 0 1 60 1 0 12 1 0 16 1 5 7 0 1 32 1 0 59 2 3 95 chain 24206 chr1 249250621 + 14016400 14016741 THE1B 368 - 15 368 109178 110 35 45 29 1 0 101 0 2 46 0 1 19 chain 31610 chr1 249250621 + 14019289 14019876 MER1A 529 - 0 484 81466 58 36 16 105 86 5 210 22 20 19 4 0 6 12 16 29 chain 43534 chr1 249250621 + 14042478 14042955 L1PA2 6032 + 5553 6029 64760 86 1 0 390 chain 4032 chr1 249250621 + 14141434 14141483 MIR 256 + 102 151 206889 49 chain 13056 chr1 249250621 + 14166130 14166432 L1PA15 4387 - 36 319 148011 22 5 0 14 3 1 44 28 25 28 1 0 8 14 10 14 1 0 54 1 0 22 27 25 16 chain 37145 chr1 249250621 + 14167035 14167446 L1PA3long 6157 + 5731 6142 73313 411 chain 18533 chr1 249250621 + 14178919 14179189 THE1D 372 + 79 351 131420 60 0 1 40 30 31 140 chain 72277 chr1 249250621 + 14184184 14185302 L1PA14 3548 - 63 1149 47345 20 1 0 9 6 0 41 1 0 13 5 4 5 1 0 16 4 2 32 5 1 11 1 0 110 1 0 59 1 0 7 1 2 16 1 0 6 2 0 13 13 9 104 2 0 4 2 0 48 3 1 10 13 10 11 0 1 117 17 20 93 5 7 147 1 0 99 3 0 38 chain 25621 chr1 249250621 + 14243669 14244006 Tigger1 2417 + 842 1181 101622 244 11 13 82 chain 28591 chr1 249250621 + 14258753 14259054 AluYa5 310 - 9 310 90780 301 chain 29932 chr1 249250621 + 14268753 14269067 AluYb8 318 + 0 314 85014 314 chain 18906 chr1 249250621 + 14273565 14274011 THE1D 372 - 0 372 130347 128 0 6 10 168 105 66 18 1 56 chain 120616 chr1 249250621 + 14308736 14310222 LTR12C 1709 - 0 1709 30839 167 0 102 212 0 4 106 4 2 4 1 0 93 8 7 98 5 7 53 0 118 247 1 2 487 chain 8231 chr1 249250621 + 14311707 14311802 L1PA3long 6157 - 4 97 169777 88 2 0 5 chain 28883 chr1 249250621 + 14311802 14312112 L1PA3long 6157 + 5748 6058 89529 310 chain 18742 chr1 249250621 + 14313661 14313931 L1PA8 5853 - 0 263 130845 92 2 1 19 2 1 46 1 0 5 13 11 68 2 0 20 chain 13294 chr1 249250621 + 14317782 14317944 L1PA7 6471 + 6299 6469 147113 59 0 8 103 chain 13402 chr1 249250621 + 14322166 14322324 MLT2A1 477 + 204 362 146705 158 chain 478068 chr1 249250621 + 14322564 14329808 L1PA8A 6298 + 77 6290 7798 13 6 11 18 20 11 18 1 0 9 2 1 11 2 1 7 1 0 12 2 0 12 3 1 7 1 0 12 17 14 8 1 0 16 5 0 7 2 0 44 3 0 20 8 0 74 2 0 22 1 0 6 6 4 37 14 5 34 1 0 267 1 0 15 36 31 277 45 41 183 0 5 90 0 1 481 8 1 125 0 4 119 2 1 354 1 2 61 0 1 11 0 7 97 11 12 320 340 0 221 1 3 30 8 10 134 1 5 28 0 3 32 1 0 213 2 0 167 1 3 4 0 1 91 0 1 133 5 1 175 1 0 52 1 2 30 0 1 46 306 0 128 0 3 529 0 3 528 350 0 6 3 0 171 8 7 123 0 1 158 1 2 227 chain 27589 chr1 249250621 + 14327277 14327576 AluYa5 310 - 16 310 94385 8 5 0 286 chain 25222 chr1 249250621 + 14328762 14329088 THE1A 353 + 0 331 103628 107 4 3 65 0 6 150 chain 4678 chr1 249250621 + 14341079 14341168 MER58B 340 + 84 176 198780 15 1 0 30 15 19 28 chain 141593 chr1 249250621 + 14355249 14356780 L1PA2 6032 - 282 1813 25881 1531 chain 27591 chr1 249250621 + 14356780 14357084 L1PA2 6032 + 5724 6028 94373 304 chain 4646 chr1 249250621 + 14368294 14368686 HAL1 992 - 462 906 199099 25 16 17 23 234 295 25 18 19 16 5 0 6 0 2 8 8 0 8 chain 21353 chr1 249250621 + 14375251 14375485 L1PA4 6152 - 485 719 122677 234 chain 42806 chr1 249250621 + 14375485 14375961 L1PA4 6152 + 5666 6141 65647 226 1 0 249 chain 24781 chr1 249250621 + 14386588 14386881 AluY 311 + 11 306 105986 20 0 1 100 0 1 173 chain 47600 chr1 249250621 + 14399900 14400449 L1PA7 6471 - 4 554 60763 329 0 1 220 chain 15150 chr1 249250621 + 14411208 14411376 L1PA4 6152 + 5975 6143 140914 168 chain 16544 chr1 249250621 + 14443703 14444039 THE1B 368 + 0 368 136810 44 8 23 105 1 0 22 38 49 31 49 56 38 chain 30593 chr1 249250621 + 14446558 14446980 MSTA 426 - 0 426 83210 33 0 1 140 12 14 26 3 5 12 8 6 85 0 1 103 chain 5172 chr1 249250621 + 14461546 14461619 MADE1 96 - 5 94 193327 27 2 18 44 chain 24659 chr1 249250621 + 14474006 14474312 AluSc 308 + 0 298 106673 122 4 0 169 4 0 7 chain 93255 chr1 249250621 + 14482437 14483750 L1MA2 4263 - 2937 4254 38580 33 1 0 248 1 2 311 0 2 244 4 3 123 29 30 16 1 0 49 1 2 76 6 11 14 2 0 39 3 4 5 1 0 91 2 1 13 chain 3140 chr1 249250621 + 14499051 14499087 MLT1H1 527 - 7 43 222189 36 chain 23367 chr1 249250621 + 14503379 14503661 AluSx4 309 + 7 289 113831 282 chain 19223 chr1 249250621 + 14504433 14504746 THE1C 375 + 8 336 129463 23 0 3 111 0 1 27 58 69 94 chain 23926 chr1 249250621 + 14528187 14528462 AluSp 311 - 36 311 110772 275 chain 9427 chr1 249250621 + 14532403 14532518 L1PA4 6152 + 6029 6143 163423 23 1 0 91 chain 63746 chr1 249250621 + 14560321 14561053 L1PA7 6471 + 5737 6464 51125 382 5 0 345 chain 5969 chr1 249250621 + 14574000 14574069 L1PA8A 6298 - 193 262 185522 69 chain 9405 chr1 249250621 + 14581160 14581319 MSTA 426 - 10 168 163531 46 3 0 46 21 24 7 1 0 35 chain 22949 chr1 249250621 + 14584205 14584450 L1HS 6032 + 5786 6031 115865 245 chain 15986 chr1 249250621 + 14593383 14593575 L1PA4 6152 - 0 189 138391 173 3 0 16 chain 6320 chr1 249250621 + 14593682 14593761 MER2 342 + 131 211 182636 4 0 1 75 chain 367530 chr1 249250621 + 14613880 14618312 L1P2 5180 - 728 5178 11166 299 0 1 170 7 8 521 7 8 274 3 0 496 0 1 337 13 10 61 0 4 333 0 4 424 0 1 702 0 15 268 10 9 45 1 0 32 0 1 178 13 12 43 2 1 33 12 11 148 chain 13927 chr1 249250621 + 14618324 14618543 THE1C 375 + 154 375 144831 32 35 36 11 0 1 141 chain 528101 chr1 249250621 + 14681933 14688335 L1PA7 6471 - 11 6466 4393 98 4 0 40 15 15 404 0 1 158 0 1 124 1 4 810 0 2 83 0 2 905 0 4 279 5 1 522 3 1 116 0 4 188 0 4 62 17 1 757 4 1 281 0 9 4 9 0 224 14 15 77 6 5 4 0 1 11 0 4 101 1 2 267 0 4 61 0 2 291 26 11 31 1 0 63 0 5 176 0 1 9 9 68 141 chain 7197 chr1 249250621 + 14707699 14707783 L1MA3 4352 + 537 621 176078 84 chain 541027 chr1 249250621 + 14708823 14714837 L1PA3long 6157 - 8 6157 2664 9 1 0 832 0 4 668 0 1 1365 0 4 1795 1 0 24 0 2 541 0 128 33 1 0 589 1 2 147 2 0 5 chain 103443 chr1 249250621 + 14714848 14716476 L1MA3 4352 + 2723 4326 35889 172 0 5 74 6 8 333 0 1 65 3 0 16 5 6 211 65 64 151 4 6 27 4 5 37 5 6 182 79 52 16 9 8 11 1 0 79 2 0 18 8 7 5 1 0 29 1 0 9 chain 22481 chr1 249250621 + 14722392 14722680 AluSg 306 + 10 296 118101 99 2 1 152 1 0 34 chain 18468 chr1 249250621 + 14732789 14733184 L1PB1 5432 + 5071 5427 131588 32 15 11 24 11 8 10 2 0 3 2 0 8 2 0 53 3 2 14 1 0 44 1 0 12 29 16 19 2 0 5 1 0 16 2 0 22 1 0 14 8 7 13 1 0 14 1 0 5 1 0 4 chain 9156 chr1 249250621 + 14746756 14746867 LTR12C 1709 - 600 711 164785 111 chain 23234 chr1 249250621 + 14755040 14755399 THE1C 375 - 0 374 114525 88 0 1 37 57 70 91 0 1 86 chain 26013 chr1 249250621 + 14759063 14759442 L1PA8 5853 - 0 370 99965 89 5 4 19 2 1 39 1 3 10 14 6 23 0 2 48 2 0 45 1 0 81 chain 19327 chr1 249250621 + 14762522 14762743 AluSq2 311 + 81 302 129158 221 chain 3768 chr1 249250621 + 14768460 14768505 MER91A 194 + 0 45 210848 45 chain 2893 chr1 249250621 + 14777998 14778032 MLT2B1 522 - 0 34 227164 34 chain 22477 chr1 249250621 + 14803540 14803900 THE1B 368 + 0 368 118126 53 1 0 11 17 18 86 1 0 110 15 16 12 12 20 42 chain 5985 chr1 249250621 + 14810001 14810144 MER4D 903 - 9 151 185383 25 1 0 22 0 1 14 53 52 28 chain 24255 chr1 249250621 + 14812114 14812407 AluSg 306 + 6 299 108911 293 chain 16843 chr1 249250621 + 14817798 14818004 L1PA7 6471 - 5 205 136006 8 6 0 192 chain 23513 chr1 249250621 + 14836612 14836890 AluSp 311 + 20 298 113056 278 chain 25050 chr1 249250621 + 14840534 14840826 AluY 311 + 0 288 104542 118 4 0 170 chain 3400 chr1 249250621 + 14857596 14857636 MSTB 430 + 381 421 217067 40 chain 50862 chr1 249250621 + 14858982 14859554 L1PA4 6152 - 16 587 58393 238 1 0 333 chain 24484 chr1 249250621 + 14868684 14868951 L1PA4 6152 + 5885 6152 107635 267 chain 13126 chr1 249250621 + 14874434 14874643 MER30 238 - 0 212 147740 39 3 0 39 1 7 33 11 0 7 4 15 72 chain 24736 chr1 249250621 + 14905841 14906150 AluY 311 + 2 310 106241 130 6 7 152 2 0 19 chain 16511 chr1 249250621 + 14949436 14949791 L1PA15 4387 + 3993 4327 136887 15 1 0 11 3 6 59 21 21 13 3 0 13 1 0 27 13 1 26 1 0 17 4 0 15 1 0 33 19 20 44 3 1 12 chain 80989 chr1 249250621 + 14971257 14972415 L1PA14 3548 - 92 1283 43197 41 0 4 13 1 0 5 1 0 15 4 2 33 17 12 109 2 1 17 8 5 48 44 41 105 2 0 4 2 0 48 2 0 14 3 1 155 0 1 69 0 53 123 1 0 272 chain 5380 chr1 249250621 + 14983949 14984014 MER5A 189 - 114 179 191200 65 chain 19430 chr1 249250621 + 15006962 15007236 L1PA8 5853 - 6 276 128870 87 1 0 19 7 8 40 7 6 5 1 0 74 2 0 31 chain 8597 chr1 249250621 + 15018920 15019027 Tigger2b_Pri 1066 - 369 475 167746 44 1 0 62 chain 26758 chr1 249250621 + 15047628 15047985 THE1C 375 + 9 364 97136 175 12 11 155 1 0 14 chain 8052 chr1 249250621 + 15053821 15053945 MER1A 529 - 0 122 170740 63 14 12 47 chain 26630 chr1 249250621 + 15061555 15061855 AluYk4 311 - 12 311 97558 173 1 0 126 chain 9256 chr1 249250621 + 15091603 15091746 MER20 218 - 31 175 164284 6 1 0 87 17 19 32 chain 32216 chr1 249250621 + 15104244 15104665 MER41B 635 - 192 614 80493 114 2 3 199 1 2 32 1 0 72 chain 21922 chr1 249250621 + 15116486 15116797 AluSp 311 - 0 301 120537 154 19 20 11 12 1 115 chain 35339 chr1 249250621 + 15121203 15121757 MLT2A2 560 + 0 560 75753 180 1 0 190 9 10 19 3 14 19 7 0 21 1 0 19 44 45 21 5 7 15 chain 3971 chr1 249250621 + 15124507 15124550 MIR 256 - 117 160 207812 43 chain 10422 chr1 249250621 + 15153776 15153997 L1PB1 5432 - 11 210 158589 16 2 1 13 1 0 21 1 0 24 2 0 15 1 0 4 3 1 18 24 12 16 2 1 42 1 0 15 chain 11521 chr1 249250621 + 15159004 15159220 MER30 238 - 1 234 154210 10 2 0 94 30 50 46 21 20 13 chain 23057 chr1 249250621 + 15163706 15163983 AluSp 311 - 24 300 115370 110 1 0 166 chain 25276 chr1 249250621 + 15185435 15185724 AluY 311 + 15 300 103335 233 4 0 52 chain 8264 chr1 249250621 + 15212646 15212895 AluJr4 308 + 150 263 169602 13 136 0 100 chain 17638 chr1 249250621 + 15217670 15218008 L1PB1 5432 - 5 312 133884 5 2 0 11 10 9 11 1 0 21 1 0 25 2 0 13 1 0 5 2 0 30 13 1 15 1 0 45 1 0 15 2 1 53 2 0 8 6 2 11 3 4 4 1 0 18 chain 9175 chr1 249250621 + 15230725 15230825 AluYk4 311 + 206 306 164683 100 chain 26021 chr1 249250621 + 15241404 15241709 AluSp 311 + 0 303 99936 91 0 3 192 5 0 17 chain 41241 chr1 249250621 + 15290122 15290684 L1PA8 5853 - 1 554 67600 7 13 0 85 1 0 15 0 11 39 19 17 16 1 0 51 3 1 48 1 0 263 chain 36711 chr1 249250621 + 15294417 15294923 MER1A 529 - 0 492 73941 64 14 8 26 9 0 256 4 1 90 0 4 43 chain 41235 chr1 249250621 + 15299795 15300290 LTR10D 510 - 0 510 67605 196 1 6 219 2 0 3 0 12 74 chain 5797 chr1 249250621 + 15317024 15317099 MER58A 224 + 45 119 187177 51 1 0 23 chain 4165 chr1 249250621 + 15372458 15372511 Tigger2a 444 - 182 235 205036 53 chain 35461 chr1 249250621 + 15419835 15420421 PRIMA4_LTR 623 - 9 623 75608 130 0 5 19 1 2 57 0 60 13 1 0 19 46 0 56 6 7 38 0 1 12 30 26 41 4 15 113 chain 4963 chr1 249250621 + 15447672 15447824 MER3 215 - 56 200 195551 5 3 0 14 17 16 56 44 40 13 chain 27132 chr1 249250621 + 15459868 15460239 THE1C 375 + 0 375 95825 138 1 5 41 15 15 176 chain 81105 chr1 249250621 + 15461833 15462792 LTR5_Hs 974 - 0 974 43137 101 2 0 30 15 21 312 0 11 499 chain 21565 chr1 249250621 + 15488152 15488430 AluSc 308 + 0 286 121902 53 11 19 214 chain 3075 chr1 249250621 + 15488957 15488993 MSTB1 431 - 374 410 223434 36 chain 2836 chr1 249250621 + 15494782 15494834 Charlie4z 170 + 91 145 228144 12 11 13 29 chain 3323 chr1 249250621 + 15511318 15511456 MER20 218 + 36 178 218516 36 87 91 15 chain 5375 chr1 249250621 + 15524560 15524781 MLT1J 494 - 142 359 191246 34 25 32 33 105 94 24 chain 5856 chr1 249250621 + 15538026 15538124 MIR 256 - 91 184 186625 19 17 12 62 chain 37872 chr1 249250621 + 15561383 15561962 L1PA16 3655 + 3004 3568 72318 85 36 23 92 1 0 31 6 7 11 11 11 21 10 8 275 chain 88525 chr1 249250621 + 15594492 15595455 L1PA3long 6157 - 0 962 40175 20 1 0 942 chain 8174 chr1 249250621 + 15605935 15606048 LTR9B 643 + 446 559 170103 30 1 0 17 1 2 64 chain 26129 chr1 249250621 + 15613803 15614179 THE1C 375 - 0 373 99486 55 9 10 127 2 0 113 11 8 43 0 1 16 chain 29674 chr1 249250621 + 15624430 15624984 L1PB1 5432 + 4871 5388 85920 232 1 2 9 3 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 41 6 5 11 69 52 24 7 0 18 chain 25265 chr1 249250621 + 15632040 15632391 THE1A 353 + 0 353 103392 24 0 1 22 0 2 61 24 23 96 0 1 4 1 0 119 chain 130434 chr1 249250621 + 15632391 15633952 THE1A-int 1579 + 0 1574 27980 438 0 2 10 0 2 53 2 1 419 1 2 5 1 0 316 0 2 214 0 8 102 chain 5477 chr1 249250621 + 15634525 15634588 THE1A 353 + 288 352 190242 41 0 1 22 chain 6087 chr1 249250621 + 15667238 15667396 MER58A 224 - 12 170 184523 44 42 50 24 16 8 32 chain 5849 chr1 249250621 + 15670950 15671106 MER58A 224 - 23 216 186700 25 35 57 20 13 21 32 4 11 27 chain 22284 chr1 249250621 + 15686203 15686459 AluY 311 + 39 296 118976 94 0 1 162 chain 71327 chr1 249250621 + 15705513 15706472 LTR5_Hs 974 - 0 974 47779 18 0 1 84 20 18 19 8 15 163 16 15 173 0 1 166 0 1 14 0 1 118 1 0 39 5 13 115 chain 14385 chr1 249250621 + 15722207 15722399 MER30 238 + 0 235 143254 16 0 18 63 6 31 107 chain 3317 chr1 249250621 + 15791329 15791381 MIRc 230 + 76 135 218633 18 5 12 29 chain 29401 chr1 249250621 + 15806901 15807276 THE1C 375 - 0 375 87059 26 2 1 233 0 1 114 chain 37896 chr1 249250621 + 15822042 15822592 PRIMA4_LTR 623 + 0 572 72291 184 5 13 10 0 1 39 5 6 56 0 1 18 1 0 23 0 1 9 15 26 121 0 1 5 9 8 50 chain 6836 chr1 249250621 + 15834795 15834876 LTR9 672 + 0 81 178682 81 chain 15291 chr1 249250621 + 15837455 15837726 LTR42 492 - 23 324 140510 128 65 96 69 1 0 8 chain 74256 chr1 249250621 + 15846780 15848335 LTR13A 966 + 0 933 46382 376 628 0 193 1 4 201 10 14 35 2 1 42 9 8 26 5 6 27 chain 25669 chr1 249250621 + 15862557 15862864 AluSp 311 - 1 301 101407 178 7 0 122 chain 3262 chr1 249250621 + 15877188 15877224 Charlie1a 1436 + 98 134 219767 36 chain 22928 chr1 249250621 + 15882210 15882506 AluSp 311 + 10 302 115972 38 21 17 237 chain 51511 chr1 249250621 + 15914492 15915242 LTR12D 1347 - 8 937 57959 56 0 4 94 1 0 34 0 4 48 1 0 17 1 0 30 4 3 27 4 0 9 3 4 140 67 54 74 1 42 13 0 150 126 chain 13296 chr1 249250621 + 15928279 15928442 Tigger3a 397 + 158 321 147102 163 chain 14075 chr1 249250621 + 16000626 16000803 HSMAR2 1300 - 960 1137 144308 177 chain 3949 chr1 249250621 + 16016993 16017042 MER58A 224 - 141 190 208149 49 chain 39363 chr1 249250621 + 16025680 16026166 L1PA6 6164 - 11 476 70229 33 22 1 431 chain 24903 chr1 249250621 + 16034711 16035009 AluSc 308 - 7 308 105323 22 0 3 276 chain 3731 chr1 249250621 + 16035490 16035553 MIR 256 - 118 182 211437 21 9 10 33 chain 3868 chr1 249250621 + 16035966 16036013 MER3 215 + 168 215 209327 47 chain 6018 chr1 249250621 + 16116555 16118418 L1MB3 1562 + 1118 1524 185066 57 1745 289 4 1 0 56 chain 34089 chr1 249250621 + 16128617 16129078 LTR2 463 + 0 463 77487 128 0 1 17 0 1 7 6 7 216 5 6 28 1 0 28 1 0 24 chain 4139 chr1 249250621 + 16217446 16217493 MER33 330 - 264 311 205374 47 chain 17222 chr1 249250621 + 16306345 16306630 AluJo 314 + 10 296 134993 91 59 60 135 chain 16072 chr1 249250621 + 16307467 16307686 THE1C 375 - 0 219 138141 25 1 0 142 3 0 9 1 5 38 chain 4296 chr1 249250621 + 16308048 16308142 MER49 923 - 828 923 203272 42 31 32 21 chain 2978 chr1 249250621 + 16381738 16381790 MIR 256 + 79 123 225477 36 8 0 8 chain 45374 chr1 249250621 + 16429308 16429823 MER9a2 513 - 0 513 62627 57 2 0 456 chain 302269 chr1 249250621 + 16429823 16433478 HERVK9-int 4720 - 0 4684 13307 174 0 28 80 0 96 297 12 4 506 0 1 207 19 20 4 0 1 371 5 0 260 1 0 252 0 923 20 1 0 192 0 1 1123 1 0 16 22 20 66 1 0 4 8 5 13 chain 44346 chr1 249250621 + 16434794 16435307 MER9a2 513 - 0 513 63765 239 0 1 4 1 0 269 chain 26364 chr1 249250621 + 16463288 16463590 AluSp 311 - 7 307 98558 172 2 0 128 chain 2847 chr1 249250621 + 16471333 16471363 MIRb 242 + 106 136 227883 30 chain 12478 chr1 249250621 + 16513844 16513994 L1PA7 6471 + 6314 6464 150347 150 chain 2697 chr1 249250621 + 16515320 16515353 MIRc 230 - 102 134 230248 4 1 0 28 chain 6304 chr1 249250621 + 16535765 16535868 MIR 256 - 54 158 182756 38 17 18 48 chain 23301 chr1 249250621 + 16591599 16591885 AluSp 311 - 23 311 114191 145 3 5 138 chain 3493 chr1 249250621 + 16606996 16607033 MADE1 96 - 59 96 215473 37 chain 24003 chr1 249250621 + 16614652 16614949 AluSc 308 + 0 305 110314 34 0 8 263 chain 24883 chr1 249250621 + 16624074 16624380 AluY 311 + 0 301 105447 101 1 0 25 4 0 175 chain 21878 chr1 249250621 + 16641134 16641399 AluY 311 + 37 303 120720 95 0 1 170 chain 10357 chr1 249250621 + 16642794 16642947 MER75 514 + 54 208 158875 34 17 19 72 1 0 29 chain 20134 chr1 249250621 + 16670064 16670322 AluSg4 309 + 28 289 126733 103 1 0 135 5 9 14 chain 23985 chr1 249250621 + 16672912 16673201 AluY 311 + 11 297 110411 121 0 1 149 4 0 15 chain 20251 chr1 249250621 + 16674213 16674471 AluY 311 + 11 267 126373 121 0 1 118 5 1 5 0 1 9 chain 3750 chr1 249250621 + 16674473 16674516 AluY 311 + 268 311 211128 43 chain 12352 chr1 249250621 + 16681110 16681280 MER4B 649 + 464 633 150825 12 1 0 83 4 3 18 0 1 52 chain 6237 chr1 249250621 + 16686179 16686258 MER49 923 - 606 685 183269 79 chain 7921 chr1 249250621 + 16761676 16763429 L1MB8 1703 - 624 1390 171513 7 6 0 42 24 26 59 1569 586 46 chain 23791 chr1 249250621 + 16772420 16772722 AluSp 311 + 0 299 111522 19 1 0 262 3 1 17 chain 22327 chr1 249250621 + 16784505 16784802 MER75 514 + 191 514 118792 135 0 4 22 0 17 115 3 8 22 chain 6717 chr1 249250621 + 16820213 16820328 LTR2 463 + 306 422 179556 61 21 23 17 1 0 15 chain 15777 chr1 249250621 + 16829074 16829620 MER84 505 - 264 498 139030 48 22 25 13 315 0 148 chain 15725 chr1 249250621 + 16840616 16840780 U1 164 - 0 164 139194 164 chain 33368 chr1 249250621 + 16845400 16845871 MER51D 577 + 108 577 78625 16 6 11 10 1 0 239 9 6 102 0 5 10 8 1 28 2 1 40 chain 7008 chr1 249250621 + 16847079 16847153 tRNA-Asn-AAC 74 - 0 74 177423 74 chain 6010 chr1 249250621 + 16858892 16858966 tRNA-Asn-AAC 74 - 0 74 185141 74 chain 6784 chr1 249250621 + 16861773 16861843 tRNA-Glu-GAA 70 - 0 70 179080 70 chain 153121 chr1 249250621 + 16867672 16869613 L1PA6 6164 + 4305 6161 24214 953 9 16 91 0 3 293 97 1 244 0 1 5 1 0 104 1 2 143 chain 6839 chr1 249250621 + 16872433 16872504 tRNA-Gly-GGG 71 - 0 71 178666 71 chain 201587 chr1 249250621 + 16896298 16899401 L1P2 5180 + 845 3231 19099 223 8 9 389 0 1 56 0 1 305 0 1 6 729 0 82 0 1 609 0 1 262 0 4 300 0 1 107 0 1 27 chain 55180 chr1 249250621 + 16897369 16898014 L1PA4 6152 - 14 660 55600 61 5 6 579 chain 3848 chr1 249250621 + 16931906 16932067 L1ME2z 1083 + 698 836 209671 31 0 1 16 98 74 16 chain 42439 chr1 249250621 + 16966614 16967999 L1MA2 4263 + 3419 4114 66092 65 0 1 96 32 28 52 2 1 120 22 28 11 12 7 32 638 0 55 41 2 39 11 9 92 8 1 47 1 0 9 chain 15725 chr1 249250621 + 16993279 16993443 U1 164 - 0 164 139193 164 chain 22860 chr1 249250621 + 17000137 17000447 AluYc 301 + 0 301 116286 72 4 7 41 1 3 106 14 0 72 chain 29472 chr1 249250621 + 17000926 17001237 AluYb8 318 + 0 311 86744 311 chain 6250 chr1 249250621 + 17004765 17004836 tRNA-Gly-GGG 71 - 0 71 183172 71 chain 3224 chr1 249250621 + 17035533 17035589 MER53 195 - 89 148 220521 30 9 12 17 chain 6298 chr1 249250621 + 17053779 17053850 tRNA-Gly-GGG 71 + 0 71 182818 71 chain 160570 chr1 249250621 + 17056670 17058493 L1PA4 6152 - 11 1843 23260 102 0 1 29 0 1 748 9 16 935 chain 15725 chr1 249250621 + 17067010 17067174 U1 164 + 0 164 139190 164 chain 6839 chr1 249250621 + 17188415 17188486 tRNA-Gly-GGG 71 + 0 71 178665 71 chain 152111 chr1 249250621 + 17191311 17193253 L1PA6 6164 - 3 1859 24324 499 97 1 151 16 16 127 0 3 90 9 16 953 chain 6662 chr1 249250621 + 17199079 17199149 tRNA-Glu-GAA 70 + 0 70 179976 70 chain 6235 chr1 249250621 + 17201957 17202031 tRNA-Asn-AAC 74 + 0 74 183283 74 chain 7008 chr1 249250621 + 17216171 17216245 tRNA-Asn-AAC 74 + 0 74 177420 74 chain 34839 chr1 249250621 + 17217457 17217933 MER51D 577 - 0 473 76418 40 2 1 28 3 1 8 1 0 108 3 0 246 1 0 10 8 13 18 chain 15725 chr1 249250621 + 17222474 17222638 U1 164 + 0 164 139189 164 chain 5829 chr1 249250621 + 17237509 17237606 MER84 505 + 143 243 186869 25 22 25 50 chain 4764 chr1 249250621 + 17329169 17329223 MIR 256 + 85 139 197759 54 chain 12846 chr1 249250621 + 17347621 17347791 MSTD 398 + 0 193 148861 126 0 3 18 2 22 24 chain 23011 chr1 249250621 + 17364360 17364647 AluSp 311 + 11 294 115567 121 3 0 141 1 0 21 chain 25511 chr1 249250621 + 17404595 17404897 AluSp 311 - 1 303 102176 302 chain 3096 chr1 249250621 + 17407833 17407895 MIRb 242 - 105 170 222996 12 0 2 20 14 15 16 chain 5744 chr1 249250621 + 17443779 17443860 MER33 330 + 146 228 187696 42 5 6 34 chain 15119 chr1 249250621 + 17456316 17456551 MER30 238 - 2 237 140990 33 9 6 150 28 31 15 chain 3172 chr1 249250621 + 17462322 17462361 Tigger5 388 + 313 352 221527 39 chain 4845 chr1 249250621 + 17464438 17464497 MIRb 242 - 115 174 196837 59 chain 5010 chr1 249250621 + 17467317 17467377 L1MB3 1562 + 1210 1271 195018 28 0 1 32 chain 27417 chr1 249250621 + 17477825 17478246 LTR7B 505 - 10 505 94914 41 14 13 35 0 2 41 1 0 52 1 89 27 35 11 69 0 10 105 chain 54566 chr1 249250621 + 17481864 17482550 LTR76 689 - 0 689 55985 38 5 4 517 0 3 78 5 6 43 chain 30334 chr1 249250621 + 17482557 17483040 MER51A 677 + 0 652 83836 177 0 135 118 80 113 6 0 2 64 1 0 37 chain 1765 chr1 249250621 + 17482872 17482912 MER51A 677 + 196 236 209116 40 chain 3718 chr1 249250621 + 17488482 17488525 MIRb 242 - 109 152 211660 43 chain 14658 chr1 249250621 + 17496830 17497042 L1PA8 5853 - 0 207 142399 93 1 0 15 2 1 56 2 1 8 3 1 32 chain 24824 chr1 249250621 + 17506289 17506758 L1PB1 5432 - 10 436 105748 4 1 0 13 2 1 11 2 1 18 5 4 24 2 0 14 1 0 5 2 0 19 24 12 16 1 0 43 1 0 69 2 0 9 5 1 14 1 0 7 1 0 22 5 0 9 10 3 107 chain 2925 chr1 249250621 + 17509666 17509698 MER63A 208 - 75 107 226599 32 chain 22881 chr1 249250621 + 17515104 17515446 THE1D 372 - 1 356 116184 125 14 20 32 27 34 144 chain 9933 chr1 249250621 + 17517418 17517540 LTR51 675 + 4 126 160917 122 chain 5404 chr1 249250621 + 17533021 17533085 MER53 195 + 0 64 190947 64 chain 10409 chr1 249250621 + 17539743 17539941 MER83 447 + 81 295 158646 83 31 46 26 18 19 40 chain 9611 chr1 249250621 + 17558280 17558401 L1PA5 6144 - 5 162 162538 27 0 36 94 chain 3890 chr1 249250621 + 17589212 17589258 L1MCa 1829 + 865 911 209019 46 chain 23821 chr1 249250621 + 17601672 17601954 AluY 311 + 24 305 111353 99 4 3 179 chain 6492 chr1 249250621 + 17611715 17611797 MLT1D 503 - 24 106 181316 82 chain 25569 chr1 249250621 + 17621390 17621685 AluY 311 + 10 304 101876 110 1 0 184 chain 29231 chr1 249250621 + 17628209 17628576 LTR14A 344 + 0 344 87906 166 24 1 177 chain 2971 chr1 249250621 + 17638380 17638416 MIRb 242 + 97 133 225639 36 chain 7460 chr1 249250621 + 17640055 17640149 MER4A 717 - 622 717 174398 45 0 1 49 chain 15824 chr1 249250621 + 17648419 17648664 MER4A 717 - 245 482 138878 73 4 5 57 21 12 90 chain 130095 chr1 249250621 + 17670387 17671958 THE1A-int 1579 + 0 1574 28069 44 0 1 605 0 1 4 0 2 473 15 11 106 0 3 324 chain 25811 chr1 249250621 + 17671963 17672310 THE1A 353 + 0 353 100823 13 2 0 34 0 1 48 1 0 144 6 14 99 chain 27491 chr1 249250621 + 17684780 17685075 AluYf4 310 + 0 295 94677 295 chain 8911 chr1 249250621 + 17686822 17687024 LTR62 707 - 502 707 166080 23 0 2 27 82 83 70 chain 7098 chr1 249250621 + 17691582 17692536 L1MB2 1706 + 1377 1694 176765 33 764 137 20 71 61 66 chain 27923 chr1 249250621 + 17705606 17705908 AluYf4 310 - 9 310 93268 175 1 0 126 chain 8837 chr1 249250621 + 17779612 17779722 LTR26B 539 + 46 156 166455 110 chain 12428 chr1 249250621 + 17785091 17785232 L1PA4 6152 - 15 154 150539 133 2 0 6 chain 46520 chr1 249250621 + 17789920 17790966 MER4E1 777 - 9 770 61582 73 2 1 21 2 3 43 88 89 104 306 2 84 0 19 85 4 5 4 1 0 95 4 0 120 0 3 10 chain 23093 chr1 249250621 + 17808151 17808451 AluSp 311 - 14 311 115175 159 9 6 132 chain 14068 chr1 249250621 + 17808490 17808661 THE1C 375 + 0 173 144326 85 0 1 60 0 1 26 chain 24502 chr1 249250621 + 17817004 17817310 AluSp 311 + 0 311 107533 91 0 3 28 1 3 186 chain 32626 chr1 249250621 + 17818901 17819366 MER61-int 3695 + 422 1022 79806 47 14 0 38 0 1 37 0 1 49 0 1 45 0 96 81 0 49 74 4 3 8 1 3 67 chain 100681 chr1 249250621 + 17824579 17827852 L1PB3 3668 - 321 1821 36588 51 559 45 246 3 0 15 2 0 90 0 5 54 0 2 135 0 1 37 323 4 24 0 4 114 27 27 44 0 3 101 489 9 178 505 36 10 6 0 129 0 1 74 0 4 57 chain 23653 chr1 249250621 + 17845394 17845681 AluSp 311 + 11 292 112293 73 6 0 208 chain 35133 chr1 249250621 + 17861420 17861932 MER1A 529 - 14 529 76017 25 6 0 23 1 4 70 0 3 215 6 3 48 15 16 11 8 13 84 chain 4662 chr1 249250621 + 17907847 17907924 MER53 195 + 112 194 198936 15 1 0 30 4 10 27 chain 6857 chr1 249250621 + 17995902 17996014 MIR 256 - 70 186 178525 15 23 27 74 chain 28536 chr1 249250621 + 18054392 18054748 THE1A 353 - 0 353 91016 245 3 0 108 chain 4920 chr1 249250621 + 18080884 18080943 MER101 471 + 0 59 196054 59 chain 13267 chr1 249250621 + 18109666 18109833 THE1B 368 + 0 181 147221 44 1 16 112 1 0 9 chain 23837 chr1 249250621 + 18111309 18111668 THE1B 368 - 0 368 111271 67 8 7 101 37 32 102 0 15 44 chain 3191 chr1 249250621 + 18120768 18120825 MIR 256 + 70 136 221084 21 1 0 11 5 15 19 chain 26230 chr1 249250621 + 18129513 18129857 THE1C 375 + 0 341 99091 176 9 5 83 0 1 76 chain 37911 chr1 249250621 + 18134037 18134494 L1PA7 6471 + 6008 6466 72270 305 0 1 152 chain 32621 chr1 249250621 + 18135968 18136455 MER1A 529 + 39 529 79814 19 6 11 11 17 13 297 0 3 41 2 0 7 23 24 64 chain 2953 chr1 249250621 + 18150750 18150783 MER58A 224 + 50 83 226031 33 chain 3699 chr1 249250621 + 18151185 18151229 MER53 195 - 150 194 211946 44 chain 2567 chr1 249250621 + 18191035 18191100 MER33 330 + 8 74 232245 18 26 27 21 chain 4504 chr1 249250621 + 18238173 18238228 MER4A1 472 + 417 472 200737 55 chain 10950 chr1 249250621 + 18239839 18239986 THE1B 368 + 0 150 156402 13 2 0 24 0 5 108 chain 8153 chr1 249250621 + 18307510 18307646 L1MB3 1562 + 1280 1425 170206 62 14 13 17 1 12 35 1 0 6 chain 27962 chr1 249250621 + 18323245 18323619 THE1C 375 - 0 374 93130 26 1 0 141 7 5 138 1 4 60 chain 9150 chr1 249250621 + 18326678 18326914 L1MB8 1703 - 41 210 164808 21 22 13 19 79 21 95 chain 28163 chr1 249250621 + 18337727 18338054 L1PA6 6164 + 5833 6160 92416 327 chain 3361 chr1 249250621 + 18376894 18376942 MIR3 191 + 81 128 217849 37 1 0 10 chain 23762 chr1 249250621 + 18398169 18398475 AluYb8 318 + 0 302 111694 104 7 8 20 17 12 158 chain 19310 chr1 249250621 + 18413525 18413884 THE1D 372 + 18 372 129217 35 21 23 8 14 0 16 4 5 33 1 2 24 27 29 29 3 0 16 0 6 128 chain 156834 chr1 249250621 + 18461762 18463502 L1PA4 6152 - 6 1752 23749 838 0 4 517 0 2 385 chain 18804 chr1 249250621 + 18474287 18474586 THE1B 368 + 0 301 130667 176 20 19 4 0 1 14 0 4 6 26 24 53 chain 33015 chr1 249250621 + 18491239 18491613 L1PA5 6144 - 9 383 79190 374 chain 49724 chr1 249250621 + 18492066 18492649 LTR10C 591 + 0 584 59212 147 1 0 363 0 2 72 chain 34003 chr1 249250621 + 18519849 18520284 MLT2A1 477 - 0 477 77611 40 0 36 16 0 2 209 2 6 168 chain 23881 chr1 249250621 + 18528908 18529276 THE1D 372 - 12 372 111019 149 59 51 160 chain 5224 chr1 249250621 + 18685233 18685306 MIR 256 - 119 193 192783 21 1 2 51 chain 48995 chr1 249250621 + 18718943 18719473 L1PA3long 6157 - 10 540 59753 530 chain 7265 chr1 249250621 + 18749917 18750002 MER4B 649 + 0 85 175683 85 chain 8825 chr1 249250621 + 18754865 18754990 MER85 139 - 0 137 166524 40 0 10 43 5 7 37 chain 27857 chr1 249250621 + 18759741 18760091 THE1A 353 + 0 353 93504 13 2 0 34 0 1 285 0 4 16 chain 105194 chr1 249250621 + 18777425 18778723 L1PA8 5853 + 4566 5851 35451 439 1 4 85 1 4 74 13 0 392 1 0 44 2 0 74 1 0 57 3 2 19 1 0 91 chain 79739 chr1 249250621 + 18788585 18789522 L1PA6 6164 + 5213 6149 43714 651 2 0 138 1 2 145 chain 27953 chr1 249250621 + 18823913 18824267 THE1A 353 - 0 353 93154 243 3 2 108 chain 7224 chr1 249250621 + 18847178 18847259 L1PA8 5853 - 0 81 175921 81 chain 11260 chr1 249250621 + 18848421 18848620 L1PB2 3958 - 120 316 155194 24 13 14 25 2 1 20 2 0 13 1 0 46 0 1 15 3 2 35 chain 11207 chr1 249250621 + 18852853 18852972 L1PA3long 6157 - 0 119 155394 119 chain 6164 chr1 249250621 + 18871668 18871793 MER63A 208 + 89 208 183847 65 32 27 12 1 0 15 chain 29230 chr1 249250621 + 18905760 18906133 THE1C 375 - 0 375 87907 180 8 9 67 0 1 118 chain 5614 chr1 249250621 + 18911032 18911115 MIR 256 - 110 194 188932 13 6 7 64 chain 5136 chr1 249250621 + 18916587 18916690 MADE1 96 - 0 87 193721 41 17 0 6 10 11 29 chain 68230 chr1 249250621 + 18916743 18917506 L1PA5 6144 - 16 772 49145 124 7 0 632 chain 3639 chr1 249250621 + 18935248 18935290 MER20 218 + 37 79 212982 42 chain 4822 chr1 249250621 + 18990698 18990751 MIR3 191 - 90 143 197103 53 chain 29250 chr1 249250621 + 19023028 19023478 L1MA3 4352 + 3867 4287 87789 226 44 31 7 14 0 4 0 1 40 1 0 84 2 0 22 1 0 5 chain 3179 chr1 249250621 + 19031153 19031195 MER58A 224 + 165 208 221374 34 0 1 8 chain 23594 chr1 249250621 + 19055072 19055377 AluSp 311 + 0 300 112608 113 0 1 11 9 3 172 chain 3761 chr1 249250621 + 19079124 19079169 MLT1H 522 - 22 67 210952 45 chain 25165 chr1 249250621 + 19112085 19112456 THE1D 372 - 0 372 103936 148 1 0 17 0 21 74 10 11 14 1 0 12 20 0 60 0 1 14 chain 9267 chr1 249250621 + 19121512 19121640 L1PA8 5853 + 5716 5843 164231 24 2 1 19 1 0 13 0 1 69 chain 15007 chr1 249250621 + 19142601 19142763 L1PA3long 6157 - 15 177 141301 162 chain 35718 chr1 249250621 + 19154093 19154557 MER1A 529 + 65 527 75247 27 11 7 356 8 10 62 chain 24199 chr1 249250621 + 19157746 19158147 MSTA 426 + 1 415 109221 105 0 1 40 5 9 60 23 24 4 1 0 29 37 45 97 chain 26330 chr1 249250621 + 19174257 19174621 THE1B 368 - 0 368 98698 156 11 13 26 2 1 127 0 5 27 2 0 13 chain 5169 chr1 249250621 + 19184432 19184611 HAL1-2a_MD 234 + 60 146 193359 25 66 0 24 3 0 16 25 1 20 chain 5511 chr1 249250621 + 19260865 19260931 L1MB3 1562 - 229 295 189928 66 chain 4895 chr1 249250621 + 19264676 19264735 MIRb 242 + 90 149 196313 59 chain 3267 chr1 249250621 + 19269009 19269046 MIRb 242 - 106 143 219634 37 chain 11344 chr1 249250621 + 19301810 19301942 MER44A 345 + 182 314 154910 132 chain 19042 chr1 249250621 + 19332093 19332443 THE1B 368 + 0 357 129998 102 21 22 45 65 71 66 7 6 21 0 1 23 chain 3409 chr1 249250621 + 19352342 19352381 MER4D0 881 + 768 807 216941 39 chain 2933 chr1 249250621 + 19366838 19366871 MIRb 242 - 118 151 226446 33 chain 8474 chr1 249250621 + 19371321 19371420 L1PA4 6152 + 6042 6141 168432 99 chain 4699 chr1 249250621 + 19387891 19387963 HAL1-2a_MD 234 + 0 78 198551 26 0 3 18 0 9 13 6 0 9 chain 22837 chr1 249250621 + 19429791 19430079 AluSp 311 + 15 300 116409 159 4 3 111 2 0 12 chain 13132 chr1 249250621 + 19526663 19526878 MER30 238 - 0 238 147716 45 0 3 52 2 0 11 3 16 65 19 28 18 chain 6321 chr1 249250621 + 19573578 19573657 MLT1B 390 + 282 361 182631 79 chain 25810 chr1 249250621 + 19590643 19590936 AluSg7 307 + 9 302 100828 293 chain 13647 chr1 249250621 + 19606307 19606536 MER30 238 + 0 238 145791 42 5 4 11 3 1 41 11 0 12 4 30 58 3 0 39 chain 43302 chr1 249250621 + 19624438 19625297 MLT2A2 560 + 4 547 65048 56 0 1 142 0 1 291 318 0 52 chain 8390 chr1 249250621 + 19631569 19631663 U6 107 - 0 94 168903 94 chain 9386 chr1 249250621 + 19647506 19647628 L1MB7 1623 - 682 803 163626 74 1 0 47 chain 2332 chr1 249250621 + 19666963 19667002 MIRc 230 - 18 56 234967 12 4 3 23 chain 25267 chr1 249250621 + 19692042 19692354 AluSp 311 + 0 308 103380 125 5 1 182 chain 3203 chr1 249250621 + 19721369 19721552 MER47B 469 + 96 342 220893 32 133 196 18 chain 3135 chr1 249250621 + 19723699 19723737 MER6B 211 + 173 211 222256 38 chain 16575 chr1 249250621 + 19750895 19751093 7SLRNA 320 + 18 216 136724 198 chain 26228 chr1 249250621 + 19788664 19788980 AluY 311 + 0 303 99094 126 5 0 170 8 0 7 chain 8406 chr1 249250621 + 19789360 19789504 MER3 215 - 64 213 168813 63 27 32 54 chain 3291 chr1 249250621 + 19802215 19802296 MADE2 80 + 0 80 219157 20 31 30 30 chain 23805 chr1 249250621 + 19812796 19813074 AluSc 308 + 7 292 111448 50 0 6 145 0 1 83 chain 24967 chr1 249250621 + 19823503 19823798 AluSp 311 - 17 311 104972 96 5 4 194 chain 45864 chr1 249250621 + 19834818 19835775 MER41B 635 - 0 635 62163 126 327 0 26 28 27 331 0 1 37 0 3 25 0 2 57 chain 30427 chr1 249250621 + 19834953 19835271 AluYb8 318 + 0 318 83594 318 chain 6613 chr1 249250621 + 19837097 19837177 U4 144 + 11 91 180350 80 chain 11223 chr1 249250621 + 19842835 19843146 MSTA 426 - 55 426 155332 22 33 53 18 61 79 11 1 0 40 42 65 83 chain 6269 chr1 249250621 + 19845399 19845495 MLT1A0 366 - 7 108 183011 49 9 14 38 chain 3733 chr1 249250621 + 19853458 19853509 L1MB3 1562 + 1431 1480 211414 7 2 0 42 chain 40473 chr1 249250621 + 19867970 19868478 MER9a3 513 + 0 513 68632 17 0 3 77 5 6 7 0 1 145 1 0 178 0 1 78 chain 390506 chr1 249250621 + 19869003 19873679 HERVK9-int 4720 + 57 4718 10437 16 2 1 50 1 0 7 45 43 80 0 3 970 0 1 1532 0 5 536 20 8 226 0 1 605 1 0 101 16 8 442 10 9 8 0 1 8 chain 38077 chr1 249250621 + 19873682 19874183 MER9a3 513 + 0 505 72019 18 0 2 80 9 11 147 1 0 176 0 1 70 chain 4751 chr1 249250621 + 19875557 19875618 MER58A 224 + 8 69 197908 61 chain 6067 chr1 249250621 + 19922532 19922608 MER2 342 - 127 206 184675 68 0 3 8 chain 9362 chr1 249250621 + 19959102 19959204 L1PA3long 6157 - 0 102 163745 102 chain 15876 chr1 249250621 + 20000001 20000197 AluSp 311 + 91 288 138717 31 2 3 163 chain 5884 chr1 249250621 + 20031582 20031662 MER30 238 - 0 83 186338 45 4 7 31 chain 11934 chr1 249250621 + 20037775 20037979 Tigger1 2417 - 1791 2000 152466 61 42 47 101 chain 3237 chr1 249250621 + 20053043 20053085 MIRb 242 + 99 139 220291 5 2 0 35 chain 22810 chr1 249250621 + 20091083 20091361 AluSp 311 + 10 308 116529 47 0 10 62 3 0 121 0 13 45 chain 13315 chr1 249250621 + 20106487 20106691 MER1B 344 - 0 209 147031 63 19 28 32 5 1 85 chain 16579 chr1 249250621 + 20136030 20136230 MER1A 529 + 63 263 136715 200 chain 36849 chr1 249250621 + 20143198 20143651 MER4A1 472 + 0 458 73736 44 1 0 5 0 1 138 0 5 265 chain 22836 chr1 249250621 + 20154282 20154569 AluSp 311 - 14 300 116413 38 8 7 241 chain 38095 chr1 249250621 + 20173983 20178405 MER41A 554 - 8 554 71995 217 3876 0 329 chain 4392 chr1 249250621 + 20184360 20184539 MER53 195 + 3 186 202038 32 110 114 37 chain 8256 chr1 249250621 + 20203512 20203613 L1PA8 5853 - 0 100 169644 93 1 0 7 chain 23256 chr1 249250621 + 20244901 20245192 AluSp 311 - 10 301 114413 32 2 1 70 0 1 187 chain 47579 chr1 249250621 + 20253379 20253916 LTR14 556 - 19 556 60781 537 chain 46935 chr1 249250621 + 20258652 20259203 LTR14 556 - 0 556 61275 274 0 1 7 3 7 267 chain 30047 chr1 249250621 + 20271117 20271493 MLT2A1 477 + 2 383 84654 140 0 1 26 1 5 209 chain 31016 chr1 249250621 + 20285496 20285925 LTR7B 505 - 2 505 82487 49 14 13 54 0 1 21 1 0 46 0 1 38 0 2 26 3 27 12 0 38 60 0 10 105 chain 5470 chr1 249250621 + 20286771 20286839 LTR9B 643 + 1 69 190302 68 chain 42907 chr1 249250621 + 20308431 20309004 LTR19B 566 + 0 566 65530 138 22 0 204 2 1 101 1 3 20 13 27 72 chain 94293 chr1 249250621 + 20310193 20311509 LTR12C 1709 - 0 1709 38265 84 1 0 83 0 102 158 1 2 52 44 13 94 0 2 7 1 0 104 0 278 120 4 6 18 20 21 94 10 7 83 0 43 338 chain 16036 chr1 249250621 + 20315903 20316099 LOR1a 498 + 0 197 138261 47 0 1 149 chain 87106 chr1 249250621 + 20316134 20317182 MER11C 1089 + 0 1073 40734 225 0 5 338 11 10 138 0 5 54 0 1 86 0 15 196 chain 9835 chr1 249250621 + 20318000 20318186 L1PA8 5853 - 1 184 161415 43 8 9 38 3 2 16 9 8 48 4 3 6 1 0 10 chain 128198 chr1 249250621 + 20318186 20319841 L1PA10 4194 - 725 2427 28523 123 0 3 218 0 2 26 1 40 98 1 0 284 0 4 627 1 0 4 0 1 272 chain 445016 chr1 249250621 + 20322425 20334258 L1PA6 6164 + 0 6162 8903 63 1 2 394 7 6 334 1 18 219 0 1 398 8 9 48 6322 0 385 0 1 454 0 2 264 0 2 291 0 1 127 0 1 162 7 9 125 0 1 452 1 2 989 0 1 95 12 632 50 1 2 613 1 0 9 chain 45371 chr1 249250621 + 20323903 20324416 MER9a2 513 + 0 513 62633 513 chain 386337 chr1 249250621 + 20325016 20329707 HERVK9-int 4720 + 6 4720 10565 15 1 0 8 19 7 13 13 9 66 1 0 7 2 1 26 6 5 175 18 19 1013 1 2 248 0 1 40 0 1 165 1 0 273 4 0 200 1 9 160 2 1 155 0 1 365 0 2 607 0 14 986 0 20 100 chain 44268 chr1 249250621 + 20329711 20330220 MER9a2 513 + 4 513 63862 509 chain 5742 chr1 249250621 + 20336468 20336538 MLT1A1-int 1737 - 31 101 187719 70 chain 3088 chr1 249250621 + 20342912 20342947 Tigger2a 444 - 71 106 223147 35 chain 44697 chr1 249250621 + 20350275 20350883 L1PB1 5432 - 1103 1700 63381 164 0 3 160 25 10 184 1 2 74 chain 91819 chr1 249250621 + 20352186 20353464 L1PB1 5432 - 37 1284 39021 4 1 0 21 1 0 24 67 50 15 1 0 45 21 19 50 2 0 8 19 14 11 6 5 15 1 0 13 1 0 479 0 1 473 chain 33997 chr1 249250621 + 20367177 20367614 MER4A1 472 + 0 458 77620 247 14 35 176 chain 15737 chr1 249250621 + 20368719 20368906 HERVH-int 3825 - 0 188 139153 181 0 1 6 chain 4341 chr1 249250621 + 20372314 20372366 LTR7B 505 + 442 494 202705 52 chain 14100 chr1 249250621 + 20375006 20375216 LTR8 732 - 463 691 144218 24 2 18 14 11 14 117 1 0 41 chain 197633 chr1 249250621 + 20376507 20379209 MER4-int 2692 + 1 2692 19382 10 1 0 25 2 0 36 1 2 25 2 0 5 3 6 61 4 5 139 0 1 218 5 14 29 0 5 30 0 4 42 0 1 66 3 0 52 0 13 142 0 1 125 0 1 19 3 0 6 35 10 103 0 3 252 0 4 66 1 0 378 5 7 128 9 6 65 85 0 52 6 52 210 0 7 170 0 12 83 chain 23817 chr1 249250621 + 20394944 20395243 AluSp 311 - 11 311 111379 22 13 14 264 chain 46433 chr1 249250621 + 20431736 20432290 MER41A 554 + 0 554 61654 554 chain 39196 chr1 249250621 + 20434452 20434942 MER41A 554 + 0 491 70462 156 0 1 243 0 1 39 6 5 46 chain 28197 chr1 249250621 + 20458778 20459145 THE1B 368 - 0 368 92320 113 0 1 86 3 0 126 0 5 24 2 0 13 chain 23146 chr1 249250621 + 20523526 20523818 AluSg 306 + 0 306 114911 45 18 32 229 chain 21056 chr1 249250621 + 20540405 20540695 AluSp 311 + 0 295 123707 60 4 12 56 4 0 21 7 10 34 2 0 102 chain 25963 chr1 249250621 + 20547379 20547673 AluSq10 312 + 0 294 100160 294 chain 65720 chr1 249250621 + 20558853 20559852 MER11A 1151 - 0 1151 50239 60 13 12 81 14 13 90 3 61 19 0 1 67 0 4 37 3 4 11 19 22 125 0 12 203 0 2 13 1 0 4 41 16 56 0 1 7 1 0 74 3 102 54 chain 7849 chr1 249250621 + 20565968 20566070 MER4D1 891 + 199 329 172009 39 0 28 63 chain 43747 chr1 249250621 + 20574736 20575519 MER41A 554 + 0 554 64508 315 230 0 113 1 2 124 chain 12732 chr1 249250621 + 20575062 20575261 L1PA7 6471 + 6275 6466 149323 17 25 16 10 0 4 106 1 0 31 2 0 7 chain 3592 chr1 249250621 + 20591339 20591381 MER5A1 166 + 58 100 213807 42 chain 26570 chr1 249250621 + 20594260 20594562 L1PA5 6144 - 12 315 97759 135 0 1 167 chain 3343 chr1 249250621 + 20595800 20595858 MLT1B 390 + 20 88 218167 30 5 15 23 chain 26660 chr1 249250621 + 20614049 20614417 L1PA8 5853 - 7 369 97453 84 1 0 21 2 1 38 2 3 9 0 3 8 1 0 71 2 0 44 1 0 49 1 0 26 3 0 5 chain 18340 chr1 249250621 + 20620984 20621191 AluSp 311 - 24 231 131955 207 chain 12125 chr1 249250621 + 20634536 20634714 L1PA16 3655 - 71 247 151713 7 3 0 6 3 0 5 0 3 85 0 1 69 chain 21330 chr1 249250621 + 20643409 20643672 AluY 311 + 41 306 122755 77 0 1 4 0 1 182 chain 14973 chr1 249250621 + 20690819 20691048 MSTC 436 + 218 436 141400 15 25 10 34 3 7 152 chain 64385 chr1 249250621 + 20733674 20734564 L1PA11 4918 + 3709 4578 50848 256 7 8 358 2 0 62 18 16 31 0 1 33 2 0 14 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 3483 chr1 249250621 + 20789975 20790112 HAL1-2a_MD 234 + 69 125 215632 14 16 1 24 66 0 17 chain 5990 chr1 249250621 + 20843728 20843847 HUERS-P1-int 2401 + 2024 2139 185335 14 1 0 3 1 0 10 4 6 4 1 0 9 7 6 48 2 0 15 chain 10169 chr1 249250621 + 20865958 20866178 MER30 238 - 0 238 159756 89 2 0 17 3 0 5 5 0 6 3 28 15 0 2 11 41 42 23 chain 8044 chr1 249250621 + 20894416 20894618 L1MA4 2864 - 54 215 170786 42 3 1 29 6 0 11 53 26 7 3 0 23 3 0 22 chain 16981 chr1 249250621 + 20899387 20899742 L1PB1 5432 - 2 330 135641 4 1 0 14 1 0 8 1 0 12 1 0 22 1 0 22 2 0 16 1 0 5 3 1 15 8 0 15 3 0 8 1 7 6 0 6 35 2 1 12 2 1 26 0 1 24 3 1 9 2 0 3 2 0 12 1 0 10 1 0 19 9 0 13 chain 23746 chr1 249250621 + 20922364 20922653 AluSq2 311 + 9 295 111800 21 5 1 102 0 1 161 chain 18872 chr1 249250621 + 20943876 20944175 THE1B 368 + 5 306 130449 164 73 75 62 chain 45928 chr1 249250621 + 20954385 20954996 MER4B 649 + 0 619 62105 47 3 0 5 5 8 147 4 11 100 0 1 4 0 1 240 11 10 45 chain 27861 chr1 249250621 + 20955650 20956005 THE1A 353 - 0 353 93488 256 2 1 48 0 1 34 2 0 13 chain 17680 chr1 249250621 + 20970331 20970621 MER44A 345 - 31 334 133747 8 5 0 111 10 13 5 0 3 69 8 5 11 0 5 14 13 23 36 chain 23769 chr1 249250621 + 21083865 21084142 AluSp 311 - 13 290 111654 277 chain 5211 chr1 249250621 + 21126595 21126692 AluJr4 308 - 16 104 192913 7 7 0 11 12 10 60 chain 171835 chr1 249250621 + 21141303 21143749 SVA_E 1901 + 0 1899 21838 153 1 0 172 3 0 251 4 3 16 0 3 219 1 0 26 2 0 80 101 0 139 442 0 159 0 1 677 chain 4738 chr1 249250621 + 21142271 21142332 SVA_E 1901 + 959 1021 124554 54 0 1 7 chain 15564 chr1 249250621 + 21142471 21142645 SVA_E 1901 + 890 1062 119819 37 3 0 38 0 1 96 chain 10906 chr1 249250621 + 21142645 21142913 SVA_E 1901 + 1188 1315 133465 39 98 0 28 44 0 52 0 1 7 chain 2358 chr1 249250621 + 21142684 21142713 SVA_E 1901 + 1354 1382 164229 11 4 3 14 chain 1250 chr1 249250621 + 21142713 21142737 SVA_E 1901 + 1129 1153 183611 24 chain 188336 chr1 249250621 + 21158100 21160146 L1PA2 6032 - 0 2050 20206 905 1 0 897 0 4 162 0 1 81 chain 26313 chr1 249250621 + 21160146 21160434 L1PA2 6032 + 3718 4006 98394 288 chain 3264 chr1 249250621 + 21170851 21170981 L1PA12 2803 - 102 221 219719 35 77 66 18 chain 60438 chr1 249250621 + 21200236 21200980 L1PA8A 6298 - 9 772 52615 527 9 22 31 0 1 37 0 4 136 0 1 4 chain 83648 chr1 249250621 + 21233886 21234806 L1PA4 6152 - 1 923 42054 256 2 0 593 0 4 69 chain 22732 chr1 249250621 + 21242693 21242968 AluY 311 + 36 311 116908 96 0 1 4 1 0 174 chain 3084 chr1 249250621 + 21338038 21338254 L1MD2 1676 - 22 216 223242 24 156 134 15 0 1 6 1 0 14 chain 21354 chr1 249250621 + 21346134 21346399 AluSc 308 + 39 303 122668 92 1 0 172 chain 148512 chr1 249250621 + 21349780 21351404 SVA_F 1814 + 0 1814 24817 13 0 1 874 1 0 47 1 66 147 0 126 530 1 0 10 chain 5992 chr1 249250621 + 21362877 21362947 MER52D 1964 + 1892 1962 185318 70 chain 165040 chr1 249250621 + 21379036 21380977 SVA_D 2077 + 0 2077 22648 11 3 0 531 0 40 104 0 40 189 51 0 28 45 5 39 0 51 186 0 1 78 0 98 676 chain 4119 chr1 249250621 + 21379877 21379925 SVA_D 2077 + 1181 1229 92478 48 chain 3861 chr1 249250621 + 21379953 21379998 SVA_D 2077 + 1257 1302 92478 45 chain 78495 chr1 249250621 + 21418085 21418985 L1PA5 6144 - 1600 2515 44092 420 0 2 39 1 0 203 0 1 155 5 13 41 0 5 36 chain 143482 chr1 249250621 + 21418985 21420602 L1PA5 6144 + 4525 6141 25564 1254 3 0 300 0 2 60 chain 23878 chr1 249250621 + 21420637 21420903 L1PA5 6144 + 5510 5776 111036 266 chain 31674 chr1 249250621 + 21420906 21421258 L1PA5 6144 + 5776 6128 81366 352 chain 4914 chr1 249250621 + 21421624 21421685 MER46C 351 - 127 189 196131 11 0 1 50 chain 32427 chr1 249250621 + 21430884 21431414 L1PA15 4387 + 3837 4356 80155 48 2 0 47 1 0 128 3 1 41 4 3 19 0 8 53 1 0 22 4 0 6 6 5 45 13 14 39 3 1 12 6 0 27 chain 28496 chr1 249250621 + 21462394 21462695 AluYb8 318 + 0 301 91200 301 chain 23969 chr1 249250621 + 21488174 21488476 AluSq2 311 + 0 299 110521 19 2 0 4 2 0 110 0 1 165 chain 5785 chr1 249250621 + 21491425 21491629 L1MB7 1623 + 998 1185 187324 39 22 20 12 93 78 38 chain 32452 chr1 249250621 + 21516892 21517310 MER4A1 472 + 0 472 80109 231 1 22 11 0 32 33 0 1 142 chain 16726 chr1 249250621 + 21520389 21520722 L1PB1 5432 - 18 318 136327 10 1 0 13 1 0 18 1 0 24 8 6 12 1 0 4 2 0 30 14 1 16 1 0 43 1 0 16 2 1 53 2 0 8 5 1 12 11 8 24 chain 20609 chr1 249250621 + 21542006 21542272 AluSp 311 + 41 301 125263 91 2 0 151 4 0 18 chain 22331 chr1 249250621 + 21556902 21557178 AluSg7 307 - 42 307 118773 18 11 0 247 chain 23924 chr1 249250621 + 21562862 21563160 AluSp 311 + 2 295 110787 286 5 0 7 chain 8128 chr1 249250621 + 21576578 21576758 L1MB3 1562 - 95 248 170346 14 51 26 10 1 0 62 5 4 37 chain 26441 chr1 249250621 + 21627705 21627991 AluYf4 310 + 0 286 98266 286 chain 14127 chr1 249250621 + 21654249 21654592 MER1B 344 + 37 335 144118 44 10 14 100 21 12 13 23 6 25 59 30 27 8 14 13 chain 23618 chr1 249250621 + 21663051 21663330 AluY 311 + 0 277 112481 24 3 0 108 0 1 144 chain 3252 chr1 249250621 + 21682126 21682171 MER5B 177 - 31 75 219966 15 1 0 29 chain 11204 chr1 249250621 + 21697778 21697926 L1PA5 6144 + 5998 6144 155405 110 5 3 33 chain 7776 chr1 249250621 + 21697955 21698065 L1PA5 6144 + 6006 6108 172440 24 9 1 77 chain 23003 chr1 249250621 + 21703366 21703718 THE1A 353 + 0 351 115603 13 2 0 34 0 1 42 5 4 17 0 2 6 17 15 52 7 8 157 chain 26257 chr1 249250621 + 21704047 21704352 AluSp 311 + 0 300 98986 128 5 0 172 chain 3748 chr1 249250621 + 21708459 21708507 MER46C 351 - 30 78 211199 48 chain 37353 chr1 249250621 + 21711787 21712245 LTR2 463 - 0 463 73025 88 14 15 306 0 4 50 chain 163000 chr1 249250621 + 21713569 21716267 SVA_F 1814 + 10 1814 22940 105 1 15 784 49 0 34 355 17 181 521 0 668 chain 1393 chr1 249250621 + 21714475 21714508 SVA_F 1814 + 931 978 87953 16 1 15 16 chain 7432 chr1 249250621 + 21714542 21714718 SVA_F 1814 + 1012 1138 87953 79 50 0 47 chain 2200 chr1 249250621 + 21714621 21714646 SVA_F 1814 + 1267 1291 144284 7 1 0 17 chain 5116 chr1 249250621 + 21714725 21714783 SVA_F 1814 + 855 914 193905 32 0 1 26 chain 1891 chr1 249250621 + 21714811 21714896 SVA_F 1814 + 375 731 143838 13 1 0 4 0 272 67 chain 3758 chr1 249250621 + 21715078 21715167 SVA_F 1814 + 1195 1284 87953 89 chain 6715 chr1 249250621 + 21715167 21715269 SVA_F 1814 + 1092 1165 137413 24 1 0 4 37 10 8 1 0 27 chain 3425 chr1 249250621 + 21715196 21715233 SVA_F 1814 + 1219 1256 168719 37 chain 3537 chr1 249250621 + 21715291 21715450 SVA_F 1814 + 769 929 143838 6 1 0 25 14 17 38 1 0 32 0 1 37 1 0 4 chain 6116 chr1 249250621 + 21715450 21715516 SVA_F 1814 + 1219 1284 145887 55 1 0 10 chain 3730 chr1 249250621 + 21715519 21715591 SVA_F 1814 + 1017 1089 154295 72 chain 26921 chr1 249250621 + 21718983 21719374 THE1D 372 - 0 372 96552 147 1 0 31 7 8 102 4 0 8 15 0 76 chain 40612 chr1 249250621 + 21722953 21723509 LTR10E 629 + 0 557 68417 18 1 0 139 23 27 112 5 4 79 1 0 178 chain 6475 chr1 249250621 + 21723563 21723644 MER41-int 2638 + 555 649 181435 35 0 13 46 chain 88419 chr1 249250621 + 21726694 21727961 MER41-int 2638 + 1389 2636 40216 281 1 0 142 18 16 16 9 7 60 13 10 52 23 4 36 4 5 16 0 2 66 1 0 191 1 0 158 1 2 74 0 4 59 10 11 35 chain 40516 chr1 249250621 + 21728370 21728913 MER41B 635 + 59 608 68572 69 0 1 157 3 4 176 3 2 81 12 17 42 chain 51270 chr1 249250621 + 21784301 21784958 PABL_A 660 - 8 659 58142 315 1 6 227 1 0 8 26 16 79 chain 19283 chr1 249250621 + 21786726 21786963 L1PA6 6164 - 7 243 129277 152 3 2 82 chain 199273 chr1 249250621 + 21801679 21804068 L1P2 5180 - 1949 4335 19262 42 1 0 149 4 8 279 14 0 95 0 1 194 0 4 6 4 0 428 4 0 314 0 1 517 8 11 10 0 1 220 0 1 10 0 5 90 chain 9837 chr1 249250621 + 21814040 21814316 AluJb 308 - 9 298 161404 31 6 10 59 126 0 26 0 135 28 chain 129188 chr1 249250621 + 21828529 21829979 SVA_C 1631 - 0 1610 28270 589 0 87 45 1 0 59 0 36 131 0 37 271 0 1 354 chain 24895 chr1 249250621 + 21853540 21853824 AluSp 311 - 27 311 105378 284 chain 7386 chr1 249250621 + 21870849 21870953 MER57-int 2662 + 2248 2352 174866 7 0 1 76 2 0 5 1 2 13 chain 25542 chr1 249250621 + 21878698 21878999 AluSp 311 + 4 309 102037 99 0 4 202 chain 34200 chr1 249250621 + 21881460 21881910 LTR7 482 - 5 482 77350 153 1 0 16 0 3 10 0 31 150 19 13 101 chain 3384 chr1 249250621 + 21891190 21891229 MIRb 242 + 67 106 217384 39 chain 24570 chr1 249250621 + 21907695 21907990 AluYk4 311 - 15 311 107146 135 11 12 149 chain 11805 chr1 249250621 + 21918888 21919077 MER53 195 - 3 195 153009 84 15 17 18 5 6 67 chain 24889 chr1 249250621 + 21953902 21954203 AluSp 311 - 7 307 105413 62 1 0 238 chain 4477 chr1 249250621 + 22066704 22066844 L1MA7 2200 - 284 423 201040 16 37 37 11 28 27 48 chain 3766 chr1 249250621 + 22067632 22067672 U7 62 + 0 40 210861 40 chain 6847 chr1 249250621 + 22107064 22107187 L1MB8 1703 + 1434 1563 178603 40 21 27 62 chain 22755 chr1 249250621 + 22107637 22107934 AluSp 311 + 8 284 116801 120 21 0 156 chain 7756 chr1 249250621 + 22112534 22112619 MER41B 635 - 544 629 172565 85 chain 41908 chr1 249250621 + 22114054 22115186 LTR10C 591 - 36 591 66747 45 0 2 189 314 0 16 1 8 69 0 1 139 283 12 43 2 0 31 chain 4828 chr1 249250621 + 22145919 22145979 MSTB 430 + 322 384 197036 30 0 2 30 chain 22934 chr1 249250621 + 22231961 22232245 AluSq2 311 + 9 294 115942 123 1 2 160 chain 22910 chr1 249250621 + 22269964 22270244 AluSq2 311 + 8 288 116064 280 chain 13989 chr1 249250621 + 22272536 22273189 L1PB1 5432 + 5118 5430 144613 16 1 0 10 1 0 14 17 11 43 11 9 15 1 0 1 305 0 40 4 3 16 6 0 8 13 4 18 13 10 10 2 0 24 1 0 22 9 8 4 1 0 22 1 0 4 chain 2906 chr1 249250621 + 22293169 22293208 LTR16C 481 + 356 391 226952 7 4 0 28 chain 35077 chr1 249250621 + 22297016 22297512 MER41A 554 + 47 554 76084 19 0 3 18 31 17 213 2 0 67 0 23 13 6 7 127 chain 25396 chr1 249250621 + 22302365 22302663 AluYf4 310 - 12 310 102704 298 chain 6675 chr1 249250621 + 22306251 22306329 MER3 215 - 107 185 179866 78 chain 23099 chr1 249250621 + 22313689 22313963 AluSg7 307 + 24 299 115151 107 0 1 167 chain 35521 chr1 249250621 + 22322692 22323188 MER41A 554 + 47 554 75521 19 0 3 18 31 17 213 2 0 67 0 23 23 0 1 123 chain 6675 chr1 249250621 + 22330870 22330948 MER3 215 - 107 185 179865 78 chain 23180 chr1 249250621 + 22354528 22354827 AluSc8 310 + 0 309 114771 53 2 0 4 3 0 103 0 1 77 3 17 54 chain 22542 chr1 249250621 + 22383877 22384165 AluSp 311 - 12 300 117837 150 4 6 5 2 0 127 chain 45430 chr1 249250621 + 22396624 22397525 LTR10C 591 + 0 586 62560 37 6 7 195 0 13 65 331 0 194 0 2 73 chain 24375 chr1 249250621 + 22409368 22409672 AluSp 311 - 11 310 108223 19 3 0 153 3 0 7 0 1 119 chain 26121 chr1 249250621 + 22430472 22430848 THE1C 375 - 11 375 99523 6 1 0 8 1 0 39 1 0 84 0 3 18 0 2 18 12 0 5 0 2 26 7 11 80 8 0 62 chain 23412 chr1 249250621 + 22481779 22482057 AluSg 306 + 27 305 113581 278 chain 8038 chr1 249250621 + 22486020 22486109 SVA_E 1901 - 18 107 170825 89 chain 22399 chr1 249250621 + 22506950 22507205 AluSc8 310 + 20 278 118487 112 0 3 143 chain 76675 chr1 249250621 + 22626504 22627712 L1PA13 3608 + 2389 3548 45133 228 0 1 275 0 4 7 20 3 53 65 64 102 10 0 34 1 0 112 13 15 49 6 5 50 8 5 47 10 6 19 1 0 19 7 4 13 5 0 14 1 0 6 21 12 12 chain 22097 chr1 249250621 + 22645966 22646249 AluSp 311 + 15 308 119799 28 0 1 144 9 18 102 chain 24651 chr1 249250621 + 22683702 22684060 THE1D 372 - 15 372 106717 17 1 0 146 27 34 77 7 0 83 chain 25324 chr1 249250621 + 22692133 22692502 THE1C 375 + 0 375 103102 180 40 43 131 0 3 18 chain 4777 chr1 249250621 + 22736110 22736219 MIRb 242 + 26 133 197606 19 40 38 50 chain 3864 chr1 249250621 + 22744409 22744510 MIRb 242 + 33 133 209381 32 42 41 27 chain 11937 chr1 249250621 + 22756215 22756505 AluSp 311 + 146 297 152452 19 137 0 41 1 0 12 1 0 79 chain 8149 chr1 249250621 + 22759970 22760111 MER2 342 + 146 289 170236 33 7 11 56 14 12 31 chain 23504 chr1 249250621 + 22764346 22764645 AluSp 311 + 10 301 113107 21 0 1 35 6 0 228 3 0 6 chain 59405 chr1 249250621 + 22769672 22770482 MER4D 903 - 8 845 53174 36 0 1 30 5 7 53 0 1 94 18 13 112 7 19 270 0 11 32 0 4 70 6 7 77 chain 3741 chr1 249250621 + 22771612 22771676 MER50 708 - 639 708 211313 11 1 0 4 6 12 42 chain 5118 chr1 249250621 + 22791639 22791696 MER52C 1267 - 203 260 193885 57 chain 6004 chr1 249250621 + 22805087 22805161 MIR 256 + 157 231 185205 74 chain 26567 chr1 249250621 + 22809282 22809590 AluY 311 + 0 301 97776 22 7 0 279 chain 4279 chr1 249250621 + 22971133 22971224 MIR 256 + 89 181 203479 45 28 29 18 chain 6496 chr1 249250621 + 22982801 22982883 L1MB5 1630 + 1176 1259 181283 64 0 1 18 chain 53054 chr1 249250621 + 23025429 23026106 L1PA8 5853 + 5184 5853 56983 4 1 0 42 3 0 213 0 1 77 0 2 39 1 0 47 2 0 70 1 0 8 0 6 7 8 1 42 1 0 17 1 0 93 chain 68058 chr1 249250621 + 23032328 23033114 L1PA5 6144 + 5351 6139 49221 91 0 1 510 1 2 184 chain 3084 chr1 249250621 + 23070974 23071007 Tigger2a 444 - 180 213 223268 33 chain 5560 chr1 249250621 + 23075319 23075398 MADE1 96 - 0 95 189476 34 4 20 41 chain 4164 chr1 249250621 + 23099627 23099726 MIRc 230 - 53 144 205038 18 34 26 47 chain 6886 chr1 249250621 + 23249318 23249407 MSTA 426 + 264 352 178299 72 1 0 16 chain 31892 chr1 249250621 + 23261948 23262392 MER51E 476 + 0 476 81020 288 14 18 98 6 34 38 chain 145798 chr1 249250621 + 23264581 23266186 L1PA4 6152 - 9 1613 25206 67 2 0 74 0 1 1462 chain 8660 chr1 249250621 + 23301528 23301650 MER4E 760 + 627 752 167425 78 10 13 34 chain 26125 chr1 249250621 + 23305391 23305707 AluY 311 + 0 311 99504 118 5 0 193 chain 37497 chr1 249250621 + 23309335 23309826 MER4A1_ 611 - 0 476 72813 13 0 1 148 11 12 140 24 7 155 chain 48938 chr1 249250621 + 23314267 23314893 MER4A1_ 611 + 0 611 59784 71 2 3 48 1 2 170 17 0 317 chain 3190 chr1 249250621 + 23320925 23320964 MER4-int 2692 + 126 165 221117 39 chain 16002 chr1 249250621 + 23326979 23327160 HERVH-int 3825 - 0 181 138343 181 chain 7862 chr1 249250621 + 23330896 23331144 MER4-int 2692 + 2566 2671 171924 63 143 0 42 chain 29512 chr1 249250621 + 23331172 23331602 MER4A1_ 611 + 0 426 86598 13 1 0 8 13 13 88 1 2 220 13 17 38 9 1 26 chain 21843 chr1 249250621 + 23347883 23348151 AluSq 315 + 11 278 120841 96 1 0 27 0 1 53 4 3 87 chain 3681 chr1 249250621 + 23351580 23351636 MER3 215 - 4 55 212206 37 5 0 14 chain 29355 chr1 249250621 + 23368934 23369244 AluYa5 310 - 0 310 87265 310 chain 5124 chr1 249250621 + 23423480 23423579 MLT1A1 405 - 67 165 193846 6 1 0 23 3 4 31 12 11 23 chain 25077 chr1 249250621 + 23463122 23463427 AluY 311 + 3 299 104421 124 8 0 48 1 0 124 chain 9165 chr1 249250621 + 23463667 23463845 L1MB7 1623 + 994 1169 164733 13 16 8 23 8 13 90 7 8 5 1 0 15 chain 2938 chr1 249250621 + 23509194 23509225 MIRb 242 - 111 142 226356 31 chain 7187 chr1 249250621 + 23530508 23530606 THE1B 368 + 214 310 176164 16 1 0 12 1 0 68 chain 28277 chr1 249250621 + 23531384 23531872 L1PB1 5432 + 4962 5420 92009 141 0 3 8 1 0 24 27 21 10 3 1 13 2 0 37 2 1 16 1 0 44 1 0 15 3 0 15 8 0 14 1 0 3 1 0 4 1 0 14 2 0 22 4 3 20 1 0 13 1 0 16 chain 87682 chr1 249250621 + 23549878 23551022 MER11A 1151 - 0 1151 40499 59 8 7 196 0 1 29 13 20 214 0 13 52 1 0 116 0 1 142 14 9 115 8 0 177 chain 3830 chr1 249250621 + 23565704 23565748 MIRb 242 + 88 132 209929 44 chain 8030 chr1 249250621 + 23572705 23572825 L1PB1 5432 + 5308 5420 170869 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 145880 chr1 249250621 + 23583263 23584911 SVA_D 2077 + 0 2072 25193 17 2 0 20 5 0 8 1 0 867 0 187 77 0 225 522 0 20 129 chain 7481 chr1 249250621 + 23595658 23595840 MER58B 340 - 0 190 174267 48 78 86 56 chain 3714 chr1 249250621 + 23604899 23604954 MLT1F1 559 + 485 540 211735 17 0 3 17 3 0 18 chain 27902 chr1 249250621 + 23662329 23662625 AluYa5 310 + 1 297 93360 296 chain 23772 chr1 249250621 + 23674890 23675175 AluSp 311 + 10 294 111642 122 1 0 162 chain 6802 chr1 249250621 + 23696746 23696830 HY4 93 + 0 84 178935 84 chain 23938 chr1 249250621 + 23700846 23701213 LTR7 482 + 0 482 110699 23 0 23 55 13 63 36 1 11 10 8 40 26 11 10 8 0 1 176 chain 23188 chr1 249250621 + 23708542 23708832 AluSp 311 - 13 311 114735 29 8 10 204 0 6 49 chain 32732 chr1 249250621 + 23719311 23719783 MER1A 529 - 0 470 79639 63 5 9 68 7 5 58 4 0 24 1 0 4 0 1 201 0 4 6 10 6 21 chain 42783 chr1 249250621 + 23738040 23738592 LTR61 567 + 0 565 65677 25 0 1 29 0 11 124 1 0 4 0 1 26 5 3 168 0 3 63 4 3 71 0 1 32 chain 22015 chr1 249250621 + 23746057 23746323 AluSz 310 + 10 277 120161 110 0 1 156 chain 3653 chr1 249250621 + 23795835 23795878 MIR 256 - 205 248 212730 43 chain 4407 chr1 249250621 + 23824562 23824611 MADE1 96 + 47 96 201850 49 chain 149704 chr1 249250621 + 23829728 23831477 SVA_D 2077 + 6 2077 24659 27 0 1 20 6 1 823 0 183 13 12 21 6 1 0 8 0 1 25 1 3 6 2 0 5 3 0 39 0 1 47 1 2 128 0 135 435 0 1 122 1 0 18 chain 2916 chr1 249250621 + 23831840 23831872 U2 167 + 0 32 226741 32 chain 10475 chr1 249250621 + 23863961 23864327 L1MB7 1623 + 1095 1412 158363 8 0 1 83 203 156 20 3 1 12 1 0 36 chain 3915 chr1 249250621 + 23893051 23893094 MIRc 230 - 119 162 208618 43 chain 44083 chr1 249250621 + 23923482 23924081 MER41B 635 + 0 635 64119 21 2 4 68 1 0 26 12 13 113 0 38 27 4 0 325 chain 24277 chr1 249250621 + 23931927 23932222 AluY 311 + 0 294 108793 23 2 1 270 chain 26168 chr1 249250621 + 23954524 23954823 AluYf5 307 - 6 307 99333 97 0 1 173 0 1 29 chain 3198 chr1 249250621 + 23963308 23963343 MIRb 242 - 118 153 220953 35 chain 7171 chr1 249250621 + 23990116 23990214 L1MD2 1676 - 449 546 176262 87 1 0 10 chain 10946 chr1 249250621 + 23993676 23993867 Charlie1b 519 - 250 455 156423 78 18 22 60 19 29 16 chain 26082 chr1 249250621 + 23995636 23995952 AluY 311 + 0 311 99699 125 6 1 185 chain 20503 chr1 249250621 + 23996845 23997195 THE1C 375 - 20 373 125622 6 1 0 130 35 33 5 0 2 10 2 1 25 29 34 107 chain 23220 chr1 249250621 + 24001221 24001591 THE1C 375 + 0 375 114601 12 3 1 34 0 6 17 43 44 70 1 2 164 1 0 25 chain 6186 chr1 249250621 + 24009586 24009679 LTR47A 437 - 278 388 183694 14 1 0 17 8 26 53 chain 15169 chr1 249250621 + 24012853 24014639 Tigger4 2445 + 463 2052 140861 24 2 0 56 3 1 43 1527 1331 118 0 3 13 chain 142117 chr1 249250621 + 24014651 24016257 SVA_D 2077 + 0 2075 25800 8 1 0 3 0 11 6 1 0 9 1 0 853 0 269 28 0 1 42 0 176 45 0 17 596 2 0 11 chain 25553 chr1 249250621 + 24033140 24033441 AluSp 311 + 0 296 101966 120 4 0 153 1 0 23 chain 3117 chr1 249250621 + 24037987 24038024 MIR 256 - 208 245 222591 37 chain 4031 chr1 249250621 + 24041037 24041082 MER5A 189 - 118 163 206908 45 chain 20766 chr1 249250621 + 24048933 24049179 AluSp 311 + 53 299 124725 246 chain 3284 chr1 249250621 + 24094306 24094344 MIRb 242 + 95 133 219278 38 chain 5260 chr1 249250621 + 24095745 24095822 L1PB1 5432 + 5351 5424 192407 21 1 0 20 1 0 12 1 0 14 1 0 6 chain 3277 chr1 249250621 + 24110494 24110535 MIR 256 - 104 145 219410 41 chain 18760 chr1 249250621 + 24152117 24152386 AluSx1 309 + 23 265 130805 84 1 0 26 29 2 80 0 1 49 chain 4585 chr1 249250621 + 24156625 24156693 MLT2B1 522 + 459 522 199805 20 5 0 43 chain 3161 chr1 249250621 + 24166198 24166244 HSMAR2 1300 - 215 260 221728 16 1 0 29 chain 7732 chr1 249250621 + 24167653 24167761 HSMAR2 1300 - 1081 1187 172700 75 8 6 25 chain 24110 chr1 249250621 + 24178159 24178514 L1PA8 5853 + 5506 5853 109694 58 1 0 46 2 0 43 1 0 26 1 0 4 19 19 38 2 1 17 3 2 10 2 1 82 chain 145807 chr1 249250621 + 24178934 24180547 SVA_D 2077 + 0 2056 25205 19 0 3 890 0 86 33 0 51 24 1 304 646 chain 37970 chr1 249250621 + 24214199 24214720 HERV1_LTRd 520 + 0 517 72173 55 1 0 8 11 15 36 2 0 22 1 2 12 10 9 200 7 2 156 chain 22218 chr1 249250621 + 24256440 24256699 AluSp 311 - 52 311 119270 259 chain 38154 chr1 249250621 + 24259679 24260140 LTR2 463 + 0 463 71905 129 0 3 22 4 3 306 chain 15589 chr1 249250621 + 24261201 24261398 MER4B 649 - 443 641 139616 158 1 2 38 chain 134063 chr1 249250621 + 24261448 24262979 SVA_D 2077 + 0 2066 27188 30 0 2 135 5 13 46 1 2 483 0 40 157 2 0 5 0 488 43 0 1 9 0 1 22 4 0 589 chain 19879 chr1 249250621 + 24263747 24264013 MER11A 1151 - 0 268 127556 155 14 15 60 0 1 37 chain 25010 chr1 249250621 + 24268880 24269179 AluSp 311 + 4 303 104736 299 chain 7182 chr1 249250621 + 24271793 24271906 L1MB3 1562 - 790 907 176193 20 10 14 83 chain 65834 chr1 249250621 + 24313028 24313790 SVA_C 1631 - 2 757 50175 598 4 0 13 1 0 62 1 0 46 2 1 35 chain 102711 chr1 249250621 + 24316409 24318554 L1PB1 5432 - 37 1495 36075 4 1 0 21 1 0 24 2 0 13 9 6 16 9 0 15 3 0 16 1 0 43 19 17 53 2 0 9 4 0 12 1 0 9 1 0 20 53 15 287 3 0 46 32 9 23 0 1 32 1 0 50 303 0 32 0 1 209 0 3 92 297 0 82 0 1 220 22 23 28 0 1 25 chain 134152 chr1 249250621 + 24319205 24321450 SVA_F 1814 - 0 1479 27173 600 505 0 252 0 15 53 1 0 6 0 1 32 1 0 18 275 0 502 chain 4450 chr1 249250621 + 24319805 24319874 SVA_F 1814 - 649 716 104999 27 1 0 10 1 0 30 chain 21353 chr1 249250621 + 24319874 24320310 SVA_F 1814 - 540 825 66536 87 1 0 10 1 0 139 149 0 49 chain 3354 chr1 249250621 + 24320140 24320192 SVA_F 1814 - 916 967 104999 43 1 0 8 chain 1917 chr1 249250621 + 24320212 24320261 SVA_F 1814 - 600 649 118613 49 chain 2155 chr1 249250621 + 24320689 24320733 SVA_F 1814 - 1153 1197 66536 44 chain 1995 chr1 249250621 + 24320733 24320784 SVA_F 1814 - 797 848 118613 51 chain 5082 chr1 249250621 + 24320787 24320848 SVA_F 1814 - 866 926 194272 56 1 0 4 chain 3593 chr1 249250621 + 24320856 24320895 SVA_F 1814 - 886 925 213784 39 chain 14481 chr1 249250621 + 24339697 24340296 MLT1A0 366 + 35 342 142947 44 2 0 58 15 33 25 28 36 33 331 14 18 0 1 45 chain 132540 chr1 249250621 + 24357925 24359387 SVA_D 2077 - 8 2055 27516 631 0 535 138 0 40 670 0 1 6 0 10 10 1 0 6 chain 39870 chr1 249250621 + 24359720 24360361 LTR15 485 - 0 483 69506 252 162 0 117 0 4 110 chain 6060 chr1 249250621 + 24379588 24380922 MSTD 398 - 2 388 184740 48 1186 235 14 29 31 27 0 1 30 chain 5111 chr1 249250621 + 24392167 24392274 MER96B 391 + 267 377 193968 24 3 1 10 0 1 34 1 0 4 1 2 11 8 12 11 chain 28969 chr1 249250621 + 24402993 24403303 AluYa5 310 - 1 310 89138 216 1 0 93 chain 36980 chr1 249250621 + 24429972 24430446 LTR15 485 + 0 478 73533 149 0 2 124 0 4 158 1 0 5 20 19 17 chain 10214 chr1 249250621 + 24460293 24460409 L1PA3long 6157 + 6032 6157 159550 83 0 9 33 chain 39641 chr1 249250621 + 24477649 24478132 LTR10D 510 - 0 510 69836 132 0 1 114 0 1 155 0 8 13 0 17 69 chain 8789 chr1 249250621 + 24488508 24488951 MLT1E2 623 - 8 494 166717 31 28 27 32 239 281 24 14 0 9 0 8 14 1 9 51 chain 4710 chr1 249250621 + 24494489 24494550 MLT2B2 565 + 501 561 198397 9 1 0 51 chain 13054 chr1 249250621 + 24526385 24526533 L1PA4 6152 + 5999 6152 148017 142 0 5 6 chain 3076 chr1 249250621 + 24531607 24531646 MIR 256 - 132 171 223379 39 chain 23300 chr1 249250621 + 24533887 24534176 AluSp 311 - 12 300 114200 18 1 0 270 chain 4884 chr1 249250621 + 24545061 24545206 MER20 218 - 72 217 196435 19 11 12 11 24 29 40 21 15 19 chain 7148 chr1 249250621 + 24552664 24552793 MER2 342 + 83 213 176413 59 35 36 35 chain 28073 chr1 249250621 + 24567499 24567862 THE1C 375 - 12 375 92749 14 1 0 73 0 1 31 1 0 5 0 1 238 chain 12008 chr1 249250621 + 24569501 24569647 L1PA4 6152 + 5995 6152 152163 139 0 11 7 chain 21318 chr1 249250621 + 24585825 24586069 AluYc 301 + 55 301 122809 65 0 2 179 chain 8089 chr1 249250621 + 24586521 24586627 L1MB2 1706 + 1446 1551 170547 78 1 0 27 chain 10456 chr1 249250621 + 24594104 24594894 MER2 342 - 47 210 158460 73 611 0 44 20 4 42 chain 542697 chr1 249250621 + 24594939 24601695 L1PA7 6471 - 6 6466 2391 6 2 0 486 0 1 19 21 1 115 301 0 134 2 3 78 2 0 603 0 1 707 7 1 202 0 1 519 1 0 155 0 3 559 0 2 237 8 11 100 0 2 69 0 2 187 1 0 219 0 1 511 0 12 687 0 7 420 0 1 205 5 4 126 1 2 61 chain 4628 chr1 249250621 + 24606263 24606342 MADE1 96 + 0 96 199322 28 1 17 26 6 7 18 chain 25597 chr1 249250621 + 24626977 24627283 AluSp 311 - 14 311 101742 9 9 0 288 chain 24442 chr1 249250621 + 24660675 24661033 THE1C 375 - 0 375 107850 25 1 0 92 0 1 67 1 0 8 0 2 7 1 0 34 1 5 14 3 0 37 0 8 7 1 9 59 chain 3305 chr1 249250621 + 24669952 24670015 MIR 256 - 141 205 218861 19 16 17 28 chain 22099 chr1 249250621 + 24749863 24750120 AluYc 301 + 15 272 119790 91 1 0 15 0 1 150 chain 14832 chr1 249250621 + 24751715 24751919 MER30 238 + 0 236 141836 24 0 18 66 4 21 19 3 0 88 chain 3106 chr1 249250621 + 24768930 24768965 MIR 256 - 113 148 222805 35 chain 31765 chr1 249250621 + 24788434 24788811 THE1C 375 - 0 375 81224 25 1 0 150 2 0 13 0 1 186 chain 17537 chr1 249250621 + 24811971 24812196 L1PA6 6164 - 2 224 134163 7 4 0 8 1 0 142 1 2 26 1 2 35 chain 3537 chr1 249250621 + 24814563 24814615 L1MB3 1562 + 1037 1086 214753 7 3 0 42 chain 3642 chr1 249250621 + 24819876 24819937 MER47A 366 + 303 365 212948 27 10 11 24 chain 30597 chr1 249250621 + 24821758 24822158 MER4A1 472 - 47 472 83202 73 1 0 70 6 7 19 0 21 114 0 2 103 0 2 14 chain 33078 chr1 249250621 + 24846966 24847332 L1PA4 6152 + 5785 6151 79084 366 chain 4286 chr1 249250621 + 24849455 24849508 MADE2 80 - 1 54 203396 53 chain 24907 chr1 249250621 + 24860818 24861116 AluY 311 + 8 302 105297 56 2 0 67 2 0 171 chain 25796 chr1 249250621 + 24928812 24929086 AluYd8 298 + 21 295 100893 274 chain 21571 chr1 249250621 + 24944017 24944381 THE1B 368 - 0 368 121879 6 1 0 108 81 85 157 0 1 11 chain 29726 chr1 249250621 + 24958421 24958739 AluYb8 318 + 0 316 85737 132 2 0 184 chain 17960 chr1 249250621 + 24990144 24990353 AluSc5 308 + 57 266 132958 209 chain 15550 chr1 249250621 + 24998414 24998594 L1PA4 6152 - 1 194 139732 126 0 13 54 chain 28792 chr1 249250621 + 25001719 25002026 AluYa5 310 + 1 308 89937 307 chain 25821 chr1 249250621 + 25006736 25007041 AluSc 308 + 4 308 100785 253 2 1 50 chain 16189 chr1 249250621 + 25024117 25024332 LTR12 884 - 485 722 137788 22 2 0 16 1 0 132 0 25 42 chain 5654 chr1 249250621 + 25033002 25033121 MER3 215 - 0 135 188526 49 37 53 33 chain 21663 chr1 249250621 + 25046978 25047265 AluSc5 308 + 0 285 121532 48 10 9 200 2 1 27 chain 96932 chr1 249250621 + 25047917 25049237 LTR12C 1709 + 84 1709 37574 142 0 1 111 0 43 269 0 278 184 1 0 4 10 8 72 13 14 14 11 4 32 0 2 223 19 10 132 6 5 77 chain 12584 chr1 249250621 + 25064820 25065024 Tigger4b 360 - 22 221 149909 29 5 14 14 20 3 104 0 3 32 chain 8472 chr1 249250621 + 25065982 25066084 LTR29 598 + 465 567 168443 102 chain 25472 chr1 249250621 + 25068106 25068405 AluSp 311 - 14 311 102346 169 2 0 128 chain 13409 chr1 249250621 + 25123001 25123165 Tigger3a 397 + 143 307 146679 164 chain 161782 chr1 249250621 + 25125164 25127574 SVA_F 1814 + 0 1814 23094 528 3 0 233 1 0 76 99 10 8 1 0 38 1 0 55 0 15 69 469 0 142 49 0 473 0 2 165 chain 5576 chr1 249250621 + 25126276 25126333 SVA_F 1814 + 1208 1265 181592 57 chain 14899 chr1 249250621 + 25126333 25126670 SVA_F 1814 + 962 1128 141635 39 1 0 22 170 0 105 chain 9797 chr1 249250621 + 25126408 25126531 SVA_F 1814 + 1170 1291 161611 17 5 4 83 1 0 17 chain 2144 chr1 249250621 + 25126671 25126745 SVA_F 1814 + 1177 1208 147419 14 43 0 17 chain 2904 chr1 249250621 + 25126685 25126723 SVA_F 1814 + 853 898 217841 2 1 0 17 0 8 18 chain 35827 chr1 249250621 + 25133793 25134240 LTR10F 562 - 0 562 75099 300 0 115 147 chain 3898 chr1 249250621 + 25153121 25153168 MER3 215 - 168 215 208878 47 chain 174927 chr1 249250621 + 25158769 25161290 SVA_E 1901 - 0 1890 21469 760 176 0 218 452 0 87 1 0 19 1 0 672 1 0 134 chain 9501 chr1 249250621 + 25159541 25159678 SVA_E 1901 - 519 1081 163072 14 4 3 16 0 1 43 0 49 28 0 376 32 chain 7899 chr1 249250621 + 25159923 25160057 SVA_E 1901 - 627 790 93003 41 22 50 4 0 1 67 chain 21074 chr1 249250621 + 25160057 25160374 SVA_E 1901 - 536 806 88463 72 48 0 120 43 44 34 chain 2829 chr1 249250621 + 25160129 25160177 SVA_E 1901 - 861 910 93003 25 0 1 23 chain 8675 chr1 249250621 + 25173886 25174048 AluJo 314 + 111 287 167329 21 47 61 94 chain 3890 chr1 249250621 + 25201179 25201238 MER63B 433 + 336 392 209031 11 1 0 27 1 0 4 1 0 14 chain 4606 chr1 249250621 + 25204559 25204613 L1MC1 2226 - 179 233 199544 54 chain 100654 chr1 249250621 + 25217990 25219316 THE1B-int 1605 - 6 1354 36595 534 0 1 140 1 9 105 0 1 98 1 0 72 15 16 165 45 28 103 0 29 47 chain 3603 chr1 249250621 + 25219325 25219365 THE1B 368 + 244 284 213601 40 chain 6516 chr1 249250621 + 25251987 25252069 MIR 256 - 95 177 181111 82 chain 3575 chr1 249250621 + 25263823 25263867 MER45A 178 + 134 178 214066 44 chain 4473 chr1 249250621 + 25299728 25299799 LTR16C 481 - 0 84 201090 37 7 20 27 chain 29707 chr1 249250621 + 25324688 25325006 AluYb8 318 - 0 318 85805 318 chain 5530 chr1 249250621 + 25362399 25362469 HAL1-2a_MD 234 + 97 168 189752 48 0 1 22 chain 3298 chr1 249250621 + 25362639 25362786 HAL1-2a_MD 234 + 9 90 219029 17 4 1 15 3 0 3 51 0 10 8 5 23 6 0 7 chain 4349 chr1 249250621 + 25368501 25368549 MER52D 1964 - 0 48 202606 48 chain 3024 chr1 249250621 + 25375751 25375788 MER4A 717 + 0 37 224492 37 chain 261296 chr1 249250621 + 25384683 25387545 L1PA3long 6157 + 3273 6157 15631 1500 0 22 1362 chain 21888 chr1 249250621 + 25405265 25405525 AluSp 311 + 33 293 120670 260 chain 3284 chr1 249250621 + 25413392 25413430 MIRb 242 + 95 133 219277 38 chain 9334 chr1 249250621 + 25423076 25423252 MER20 218 + 38 218 163880 43 1 4 76 40 41 16 chain 31499 chr1 249250621 + 25442485 25442839 L1PA4 6152 - 9 363 81648 354 chain 19984 chr1 249250621 + 25442848 25443069 L1P1 4361 + 1140 1361 127193 221 chain 2911 chr1 249250621 + 25449617 25449651 ORSL 269 - 1 35 226844 34 chain 16593 chr1 249250621 + 25484764 25485116 L1PB1 5432 - 12 330 136687 16 1 0 13 1 0 6 0 1 14 1 0 23 3 1 11 46 33 6 3 0 15 1 0 40 5 4 15 3 2 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 20 3 0 12 chain 19610 chr1 249250621 + 25487225 25487549 L1MC1 2226 + 135 462 128362 31 1 0 8 0 3 51 0 3 39 2 12 82 48 36 62 chain 5371 chr1 249250621 + 25491609 25491793 L1MA8 2339 + 2160 2324 191295 34 5 0 15 7 8 11 11 9 17 59 45 25 chain 18510 chr1 249250621 + 25492929 25493161 AluY 311 + 73 300 131472 60 11 6 161 chain 27815 chr1 249250621 + 25503034 25503387 THE1B 368 + 0 356 93648 13 2 0 27 0 5 4 0 1 120 1 0 186 chain 2561 chr1 249250621 + 25533453 25533616 MIR 256 - 85 251 232354 19 15 16 18 93 95 18 chain 3125 chr1 249250621 + 25535020 25535058 LTR5 62 - 24 61 222437 33 1 0 4 chain 28818 chr1 249250621 + 25540925 25541232 AluYa5 310 + 0 306 89811 98 1 0 208 chain 21219 chr1 249250621 + 25568114 25568363 AluY 311 + 0 253 123147 89 0 4 160 chain 4882 chr1 249250621 + 25577012 25577102 MLT1E2 623 + 22 109 196459 22 1 0 22 13 11 32 chain 22210 chr1 249250621 + 25589805 25590145 THE1B 368 - 0 368 119304 14 5 22 32 2 0 88 0 3 12 4 0 25 9 8 98 7 22 44 chain 118153 chr1 249250621 + 25590145 25591716 THE1B-int 1605 - 0 1604 31749 275 5 6 249 0 7 259 57 56 80 4 6 95 1 2 51 2 0 63 1 26 225 2 0 169 0 2 33 chain 17162 chr1 249250621 + 25595540 25595783 MER47A 366 - 7 250 135138 216 0 12 5 12 0 10 chain 18494 chr1 249250621 + 25596865 25597118 MER1B 344 + 89 339 131514 127 4 0 49 10 11 63 chain 6087 chr1 249250621 + 25631101 25631192 L1MA4 2864 + 2480 2571 184519 14 6 5 21 0 1 50 chain 8198 chr1 249250621 + 25637076 25637180 MSTD-int 1705 + 40 144 169963 104 chain 18597 chr1 249250621 + 25641419 25641654 AluSc 308 + 6 288 131238 125 1 0 53 0 48 56 chain 21675 chr1 249250621 + 25660131 25660470 THE1B 368 - 0 368 121488 14 5 22 32 2 0 88 0 3 12 4 0 25 9 8 22 0 1 75 7 22 44 chain 117773 chr1 249250621 + 25660470 25662042 THE1B-int 1605 - 0 1604 31866 275 5 6 52 1 0 197 0 7 259 57 56 80 5 7 94 1 2 51 2 0 63 1 26 225 2 0 169 0 2 33 chain 10138 chr1 249250621 + 25668045 25668161 AluSp 311 - 187 303 159909 116 chain 13027 chr1 249250621 + 25685905 25686124 MER30 238 - 0 238 148148 39 0 3 14 24 30 14 2 0 14 4 16 108 chain 8198 chr1 249250621 + 25708248 25708352 MSTD-int 1705 - 1561 1665 169964 104 chain 6205 chr1 249250621 + 25714226 25714297 L1MA4 2864 - 293 365 183544 55 0 1 16 chain 20521 chr1 249250621 + 25749209 25749526 MER1B 344 - 5 342 125566 63 10 11 45 4 0 131 8 13 35 5 23 16 chain 3512 chr1 249250621 + 25766557 25766595 Charlie1 1172 - 63 101 215197 38 chain 35720 chr1 249250621 + 25787466 25787862 L1PA4 6152 + 5755 6151 75241 396 chain 25306 chr1 249250621 + 25798727 25799015 L1PA7 6471 - 21 309 103190 288 chain 556814 chr1 249250621 + 25833088 25839210 L1PA2 6032 + 12 6032 631 555 0 4 346 1 2 656 0 1 695 108 0 3761 chain 7807 chr1 249250621 + 25869600 25869692 MER30 238 + 138 230 172267 92 chain 83575 chr1 249250621 + 25914340 25915308 LTR5_Hs 974 + 0 974 42090 285 0 1 244 1 2 285 0 6 47 2 0 104 chain 4074 chr1 249250621 + 25927106 25927245 MER53 195 - 14 157 206276 40 74 78 25 chain 151285 chr1 249250621 + 25929720 25931433 SVA_D 2077 + 4 2069 24431 538 0 40 105 0 40 176 0 133 17 0 128 39 1 0 168 0 1 4 9 8 43 0 1 473 0 11 140 chain 120691 chr1 249250621 + 25957758 25959999 L1PB3 3668 - 1833 3541 30802 57 5 4 109 3 0 267 2 0 105 262 9 63 15 13 5 3 0 95 10 11 4 1 0 117 0 2 73 0 4 17 1 0 177 1 10 10 0 1 24 0 3 54 0 1 118 311 1 232 0 22 42 1 4 44 3 0 10 chain 84157 chr1 249250621 + 25962348 25963360 MER11A 1151 - 4 1151 41837 74 0 5 36 0 1 172 6 40 525 4 0 140 0 99 55 chain 18769 chr1 249250621 + 26001952 26002238 L1PB2 3958 - 120 395 130776 63 2 1 56 21 12 8 0 1 18 1 0 62 6 5 49 chain 21363 chr1 249250621 + 26025530 26025812 AluSp 311 + 15 298 122641 103 0 6 153 10 5 16 chain 41982 chr1 249250621 + 26034491 26035093 MER41B 635 - 8 613 66647 30 19 18 27 0 5 35 0 1 43 0 3 5 13 9 319 15 14 96 chain 3740 chr1 249250621 + 26045336 26045382 L1MB7 1623 - 194 239 211324 6 1 0 39 chain 3147 chr1 249250621 + 26105077 26105120 MIRc 230 - 105 155 221993 27 0 7 16 chain 5616 chr1 249250621 + 26114697 26114773 MER5A1 166 - 91 165 188920 12 2 0 62 chain 4993 chr1 249250621 + 26180150 26180424 MLT1F1 559 - 109 463 195219 42 180 261 16 9 8 27 chain 4775 chr1 249250621 + 26205743 26205800 MER39B 650 + 476 533 197643 57 chain 4496 chr1 249250621 + 26219702 26219753 MER5C 305 - 186 237 200824 51 chain 28069 chr1 249250621 + 26237088 26237484 LTR7B 505 - 64 505 92756 79 1 0 82 0 2 25 38 69 69 0 10 13 0 3 89 chain 8705 chr1 249250621 + 26237491 26237594 HERVH-int 3825 - 1704 1807 167173 103 chain 7372 chr1 249250621 + 26237635 26237725 MER72 723 - 21 111 174960 90 chain 31934 chr1 249250621 + 26269471 26269925 Harlequin-int 5206 + 3573 4020 80962 25 5 1 76 6 1 12 1 2 17 1 0 5 0 1 85 22 23 199 chain 21459 chr1 249250621 + 26322887 26323145 AluY 311 + 39 295 122298 84 3 0 7 1 2 163 chain 3539 chr1 249250621 + 26401244 26401379 L1MA8 2339 - 12 126 214715 24 69 50 20 2 0 20 chain 14272 chr1 249250621 + 26404248 26405696 MLT1A 405 + 4 363 143645 115 12 17 28 1225 131 68 chain 7860 chr1 249250621 + 26416324 26416432 L1MC1 2226 + 1291 1393 171936 9 6 0 93 chain 48917 chr1 249250621 + 26419829 26420405 LTR10C 591 + 0 591 59800 491 4 19 81 chain 25247 chr1 249250621 + 26467531 26467821 AluYc3 301 + 0 292 103492 20 0 1 92 1 2 177 chain 29794 chr1 249250621 + 26489824 26490134 AluYa5 310 - 0 310 85479 310 chain 6217 chr1 249250621 + 26506636 26506713 MER5A 189 - 61 138 183433 77 chain 38644 chr1 249250621 + 26543130 26543615 LTR2C 499 + 0 499 71231 186 0 6 109 0 1 64 2 8 66 0 1 58 chain 27185 chr1 249250621 + 26562055 26562362 AluSp 311 - 4 311 95642 307 chain 4426 chr1 249250621 + 26578157 26578226 MSTD 398 - 334 398 201631 40 1 0 5 4 0 19 chain 41698 chr1 249250621 + 26595322 26595896 LTR10A 586 + 0 586 67027 7 0 4 33 1 9 88 1 0 61 8 9 27 0 1 42 1 2 220 8 6 77 chain 22629 chr1 249250621 + 26601774 26602063 AluSc 308 - 13 302 117427 164 1 0 12 9 10 103 chain 22542 chr1 249250621 + 26645662 26645969 AluY 311 + 1 296 117836 130 2 0 10 5 0 65 9 10 42 4 0 24 2 0 14 chain 14934 chr1 249250621 + 26676102 26676288 MSTC 436 + 0 187 141522 112 0 1 74 chain 9750 chr1 249250621 + 26702151 26702289 MER51B 395 - 7 157 161844 79 1 13 14 0 1 36 1 0 7 chain 13896 chr1 249250621 + 26725197 26725352 L1PA6 6164 + 6005 6160 144931 155 chain 24380 chr1 249250621 + 26744759 26745057 AluY 311 + 4 306 108195 128 0 1 142 4 7 24 chain 12793 chr1 249250621 + 26804561 26804705 L1PA4 6152 + 6003 6151 149083 90 0 4 54 chain 22182 chr1 249250621 + 26805846 26806136 AluSp 311 - 22 311 119431 157 2 0 74 4 5 53 chain 40123 chr1 249250621 + 26809784 26810627 MER41A 554 - 0 541 69149 118 312 0 73 2 1 98 12 23 228 chain 30114 chr1 249250621 + 26835369 26835685 AluYb8 318 - 2 318 84444 316 chain 40081 chr1 249250621 + 26836469 26839380 Tigger1 2417 + 45 1477 69212 40 17 19 25 12 14 152 2177 691 53 0 3 64 87 84 15 1 0 4 0 1 76 7 8 78 0 3 86 1 0 16 chain 12811 chr1 249250621 + 26844743 26844907 L1PA7 6471 - 4 165 149010 8 3 0 153 chain 24773 chr1 249250621 + 26917736 26918025 AluY 311 + 4 294 106039 128 0 1 161 chain 8908 chr1 249250621 + 26920432 26920531 HY3 101 - 1 100 166091 99 chain 175179 chr1 249250621 + 26921941 26923999 SVA_D 2077 + 0 2073 21436 4 1 0 6 1 0 6 1 0 12 0 11 869 2 0 8 3 1 27 12 17 5 0 1 24 1 0 39 1 0 6 35 10 6 1 0 78 0 1 4 10 37 8 0 1 32 0 3 172 0 1 684 chain 2672 chr1 249250621 + 26922969 26923004 SVA_D 2077 + 1264 1299 77024 35 chain 25250 chr1 249250621 + 26932202 26932501 AluSc5 308 - 9 307 103477 173 1 0 125 chain 25054 chr1 249250621 + 26961444 26961727 AluYk4 311 - 28 311 104529 283 chain 43372 chr1 249250621 + 26962395 26963782 MER41B 635 + 0 635 64969 126 0 1 38 6 9 39 455 0 85 0 1 77 1 0 90 20 19 29 300 0 64 1 3 5 2 0 49 chain 22469 chr1 249250621 + 26967816 26968115 AluSp 311 - 8 303 118158 160 15 11 124 chain 25876 chr1 249250621 + 26968456 26968759 AluSg4 309 - 6 309 100546 303 chain 23780 chr1 249250621 + 26972912 26973225 AluSp 311 + 0 309 111593 128 1 0 4 14 11 166 chain 26904 chr1 249250621 + 26975252 26975547 AluYf4 310 + 0 295 96614 295 chain 7194 chr1 249250621 + 27037918 27038043 MLT1A 405 - 247 367 176117 32 1 2 51 19 13 22 chain 23593 chr1 249250621 + 27065357 27065677 AluSg7 307 - 0 307 112617 40 0 4 17 28 12 102 1 0 132 chain 28077 chr1 249250621 + 27118803 27119117 AluYb8 318 - 7 318 92724 5 3 0 306 chain 158116 chr1 249250621 + 27129382 27131334 SVA_D 2077 - 0 2039 23574 8 10 0 128 0 20 514 32 27 199 0 1 8 10 37 4 0 1 78 1 0 6 72 26 66 0 36 156 1 0 23 0 40 611 11 36 14 chain 3606 chr1 249250621 + 27130387 27130452 SVA_D 2077 - 765 830 79640 65 chain 5162 chr1 249250621 + 27135134 27135198 L1MB3 1562 - 1025 1089 193423 64 chain 6040 chr1 249250621 + 27141070 27141140 MLT1B 390 + 264 334 184893 70 chain 103602 chr1 249250621 + 27143964 27145832 SVA_F 1814 + 335 1472 35832 553 1 0 60 401 14 127 343 0 383 chain 17682 chr1 249250621 + 27144581 27144807 SVA_F 1814 + 966 1142 92970 125 50 0 51 chain 2022 chr1 249250621 + 27144714 27144736 SVA_F 1814 + 972 994 213931 22 chain 15902 chr1 249250621 + 27144807 27144979 SVA_F 1814 + 966 1138 91286 172 chain 7215 chr1 249250621 + 27145155 27145235 SVA_F 1814 + 962 1043 175972 76 0 1 4 chain 11675 chr1 249250621 + 27145253 27145378 SVA_F 1814 + 1089 1214 153580 125 chain 4115 chr1 249250621 + 27145406 27145449 SVA_F 1814 + 968 1011 205711 43 chain 24885 chr1 249250621 + 27161922 27162212 AluSc5 308 + 11 299 105439 283 2 0 5 chain 3469 chr1 249250621 + 27185054 27185092 MER66B 489 + 295 333 215834 38 chain 17386 chr1 249250621 + 27186013 27186237 MER30 238 + 0 238 134552 107 5 16 73 0 3 39 chain 28920 chr1 249250621 + 27193148 27193458 AluYg6 310 - 0 310 89371 310 chain 29815 chr1 249250621 + 27200240 27200559 AluYb8 318 - 0 318 85395 200 1 0 118 chain 23681 chr1 249250621 + 27213041 27213327 AluY 311 + 8 301 112142 37 5 11 76 0 1 168 chain 9904 chr1 249250621 + 27245741 27245851 L1PA5 6144 - 3 113 161048 110 chain 27550 chr1 249250621 + 27251749 27252051 AluYf4 310 + 0 302 94506 302 chain 19062 chr1 249250621 + 27261867 27262170 THE1C 375 - 58 362 129933 61 15 9 12 19 22 28 1 2 37 0 4 48 1 0 81 chain 5073 chr1 249250621 + 27280471 27280537 L1MB3 1562 + 1351 1417 194383 66 chain 26834 chr1 249250621 + 27354340 27355067 MER41E 591 + 22 449 96860 101 16 15 89 2 0 19 12 21 106 316 8 22 1 3 24 0 2 5 2 0 12 chain 15096 chr1 249250621 + 27368804 27369025 AluSq2 311 + 10 232 141048 121 9 10 35 7 8 23 2 1 24 chain 10616 chr1 249250621 + 27378147 27378276 MER85 139 - 0 139 157749 40 0 10 89 chain 33958 chr1 249250621 + 27386762 27387218 LTR2 463 + 0 463 77679 61 0 3 150 0 1 67 10 8 11 0 2 4 1 0 55 12 13 41 0 3 44 chain 169436 chr1 249250621 + 27389964 27392050 SVA_E 1901 + 0 1900 22126 101 0 23 29 1 0 16 1 10 15 0 1 622 224 0 110 4 0 39 3 13 921 chain 14335 chr1 249250621 + 27390782 27390973 SVA_E 1901 + 848 989 103647 75 53 0 30 0 3 33 chain 3487 chr1 249250621 + 27390858 27390910 SVA_E 1901 + 1095 1147 108020 52 chain 11343 chr1 249250621 + 27405482 27405638 AluJb 308 - 16 177 154912 12 6 12 96 1 0 41 chain 5585 chr1 249250621 + 27412038 27412105 MLT1E1A 663 - 0 67 189230 67 chain 24728 chr1 249250621 + 27434553 27434837 AluSg7 307 - 4 288 106283 29 0 1 141 1 0 113 chain 5795 chr1 249250621 + 27446125 27446237 MIR 256 - 115 234 187187 6 2 0 46 25 34 33 chain 2925 chr1 249250621 + 27458498 27458575 MIRb 242 - 70 146 226583 14 34 33 29 chain 27490 chr1 249250621 + 27483000 27483293 AluYd8 298 + 0 293 94683 293 chain 89929 chr1 249250621 + 27499663 27500852 HSMAR1 1287 - 0 1202 39676 337 31 34 167 5 6 82 0 3 44 0 7 47 1 0 475 chain 32506 chr1 249250621 + 27504817 27505213 MER51B 395 + 0 395 80014 256 2 1 138 chain 29028 chr1 249250621 + 27513374 27513683 AluYb8 318 + 0 309 88858 309 chain 27120 chr1 249250621 + 27514317 27516235 MER51B 395 + 0 388 95870 106 944 17 118 9 8 42 602 0 97 chain 43536 chr1 249250621 + 27534468 27534955 L1PA4 6152 - 1 488 64757 487 chain 5065 chr1 249250621 + 27535593 27535651 MER30 238 + 46 104 194486 58 chain 46691 chr1 249250621 + 27547136 27547665 SVA_C 1631 + 1101 1631 61464 81 1 2 447 chain 3681 chr1 249250621 + 27575977 27576072 L1MB7 1623 - 148 230 212208 23 36 24 6 1 0 29 chain 8284 chr1 249250621 + 27603242 27603465 L1MB7 1623 - 436 691 169493 76 19 18 18 37 37 23 33 66 17 chain 22666 chr1 249250621 + 27607670 27607950 AluY 311 + 0 302 117239 68 0 8 33 1 0 23 0 1 125 0 14 30 chain 148703 chr1 249250621 + 27614849 27616533 SVA_D 2077 - 7 2076 24791 625 3 0 8 0 49 53 0 78 154 16 207 171 0 37 38 0 40 574 3 1 16 5 0 18 chain 9672 chr1 249250621 + 27651709 27651816 U6 107 + 0 107 162234 107 chain 12945 chr1 249250621 + 27711257 27711404 L1PA5 6144 + 5990 6137 148449 147 chain 32898 chr1 249250621 + 27711427 27711805 L1PA6 6164 + 5782 6161 79372 193 0 1 185 chain 24673 chr1 249250621 + 27712337 27712630 AluSp 311 - 18 311 106594 293 chain 23376 chr1 249250621 + 27782562 27782849 AluY 311 + 11 304 113778 121 0 1 143 1 6 22 chain 28323 chr1 249250621 + 27797573 27797876 AluYa5 310 + 0 302 91855 97 1 0 205 chain 25260 chr1 249250621 + 27807251 27807576 AluY 311 + 8 310 103415 50 0 6 108 29 0 138 chain 20297 chr1 249250621 + 27822552 27822804 AluSc8 310 + 21 290 126237 14 4 19 79 0 2 155 chain 84983 chr1 249250621 + 27825941 27828142 L1PA8A 6298 + 5217 6291 41517 57 0 14 75 337 0 125 0 3 35 0 4 118 494 0 209 316 0 321 11 10 103 chain 24911 chr1 249250621 + 27828584 27828888 AluSp 311 + 11 308 105273 20 7 0 277 chain 2947 chr1 249250621 + 27946495 27946526 MIRb 242 + 102 133 226151 31 chain 4371 chr1 249250621 + 27956304 27956356 MIRb 242 - 112 164 202299 52 chain 8748 chr1 249250621 + 27956863 27956984 MER30 238 + 126 238 166927 6 4 0 6 2 0 61 3 0 39 chain 9139 chr1 249250621 + 28002113 28002220 U6 107 - 0 107 164861 107 chain 7650 chr1 249250621 + 28003740 28003833 L1PA8 5853 - 0 93 173229 93 chain 21924 chr1 249250621 + 28003876 28004174 AluY 311 + 0 311 120525 52 6 12 61 2 1 38 0 7 79 0 1 60 chain 39368 chr1 249250621 + 28007797 28008316 THE1B-int 1605 - 1072 1605 70221 65 34 40 147 0 5 142 0 1 116 0 2 15 chain 28527 chr1 249250621 + 28008316 28008682 THE1B 368 - 0 368 91064 200 1 0 123 1 6 24 2 0 15 chain 36165 chr1 249250621 + 28009145 28009595 LTR2 463 + 0 463 74686 30 0 7 18 1 4 68 0 3 333 chain 5208 chr1 249250621 + 28009692 28009749 MER21-int 1364 - 1237 1294 192939 57 chain 22613 chr1 249250621 + 28023959 28024263 Tigger3a 397 - 36 389 117517 222 15 64 67 chain 3812 chr1 249250621 + 28028857 28028915 MER65A 464 + 277 338 210209 25 5 8 28 chain 22110 chr1 249250621 + 28028915 28029166 AluY 311 + 36 288 119738 90 0 1 161 chain 25498 chr1 249250621 + 28034348 28034649 AluSc5 308 - 7 308 102232 301 chain 3338 chr1 249250621 + 28034654 28034694 MSTB 430 + 390 430 218261 40 chain 13811 chr1 249250621 + 28035255 28035592 L1PB1 5432 - 10 318 145218 21 1 0 7 2 1 23 1 0 24 27 22 16 12 5 7 3 0 16 2 1 43 21 19 39 12 10 9 2 0 3 2 0 12 1 0 6 1 0 24 chain 45461 chr1 249250621 + 28039870 28040431 LTR19B 566 + 0 566 62536 273 0 4 58 1 0 33 0 3 107 1 0 34 0 1 21 3 2 30 chain 24208 chr1 249250621 + 28074980 28075291 AluYf5 307 - 7 307 109169 34 0 7 19 22 3 29 0 1 207 chain 4188 chr1 249250621 + 28119223 28119277 MLT1A0 366 - 312 366 204733 54 chain 18534 chr1 249250621 + 28133188 28133552 THE1D 372 - 0 372 131415 32 1 0 116 114 123 101 chain 51153 chr1 249250621 + 28147117 28147678 L1PA3long 6157 + 5579 6147 58217 433 0 7 128 chain 57717 chr1 249250621 + 28155641 28156284 SVA_D 2077 + 1420 2077 54127 25 3 0 4 0 1 331 0 16 280 chain 23490 chr1 249250621 + 28164005 28164302 AluSc8 310 + 0 301 113173 10 4 0 99 0 5 18 0 3 166 chain 158620 chr1 249250621 + 28178685 28181614 SVA_F 1814 + 9 1814 23516 610 0 37 171 185 0 28 1 0 25 0 1 17 2 1 52 0 15 172 1 0 132 989 0 544 chain 9766 chr1 249250621 + 28179492 28179651 SVA_F 1814 + 893 1067 79830 43 0 1 10 1 15 105 chain 32013 chr1 249250621 + 28180120 28180981 SVA_F 1814 + 893 1274 80845 55 345 14 235 98 0 16 51 0 61 chain 4558 chr1 249250621 + 28180175 28180270 SVA_F 1814 + 1139 1185 101866 10 37 0 5 12 0 31 chain 3512 chr1 249250621 + 28180272 28180313 SVA_F 1814 + 962 1003 177898 41 chain 9877 chr1 249250621 + 28180313 28180425 SVA_F 1814 + 1080 1191 161186 107 1 0 4 chain 6664 chr1 249250621 + 28180425 28180497 SVA_F 1814 + 1142 1214 177228 72 chain 3320 chr1 249250621 + 28180755 28180794 SVA_F 1814 + 972 1011 194007 39 chain 3117 chr1 249250621 + 28180794 28180843 SVA_F 1814 + 962 1011 95944 49 chain 1087 chr1 249250621 + 28180869 28180893 SVA_F 1814 + 874 898 172360 24 chain 1654 chr1 249250621 + 28180894 28180920 SVA_F 1814 + 1011 1037 95944 26 chain 4453 chr1 249250621 + 28180981 28181051 SVA_F 1814 + 1098 1165 95944 28 1 0 6 2 0 33 chain 38397 chr1 249250621 + 28193634 28194109 LTR15 485 - 2 476 71577 46 4 0 286 0 2 73 0 1 66 chain 24624 chr1 249250621 + 28221951 28222268 AluY 311 + 10 309 106861 31 3 0 91 18 3 174 chain 21183 chr1 249250621 + 28225748 28226039 AluSg 306 + 11 306 123264 79 9 11 126 7 10 54 1 0 15 chain 29253 chr1 249250621 + 28247807 28248112 AluYb8 318 + 0 305 87779 305 chain 46888 chr1 249250621 + 28250021 28250550 L1PA4 6152 + 5610 6140 61315 271 1 3 14 1 0 242 chain 25759 chr1 249250621 + 28273549 28273846 AluSp 311 - 14 311 101045 297 chain 10436 chr1 249250621 + 28349451 28349699 L1MC3 1789 + 1094 1321 158543 21 3 1 26 34 33 54 22 0 6 4 0 9 3 0 11 0 1 36 6 16 13 chain 3150 chr1 249250621 + 28396547 28396602 MLT1D 503 + 399 456 221922 24 7 9 24 chain 27219 chr1 249250621 + 28415520 28415817 AluSp 311 - 10 307 95524 297 chain 14029 chr1 249250621 + 28418019 28418242 Tigger3a 397 - 56 356 144466 21 14 39 142 15 67 31 chain 12023 chr1 249250621 + 28444396 28444543 L1P5 443 + 290 437 152107 147 chain 6601 chr1 249250621 + 28446210 28446288 Tigger1 2417 - 898 976 180451 78 chain 24903 chr1 249250621 + 28452402 28452692 AluSg7 307 - 6 296 105326 290 chain 35060 chr1 249250621 + 28458558 28459036 MER41E 591 - 112 591 76102 75 26 24 153 0 1 100 1 0 17 0 3 106 chain 2961 chr1 249250621 + 28460021 28460053 LTR8A 794 + 571 603 225866 32 chain 4092 chr1 249250621 + 28470666 28470728 U7 62 - 0 62 206046 20 1 2 5 1 0 35 chain 5086 chr1 249250621 + 28478282 28478381 MLT1A1 405 + 238 344 194226 23 11 13 29 8 13 28 chain 19769 chr1 249250621 + 28528373 28528610 AluSp 311 + 57 291 127909 75 2 0 27 1 0 132 chain 22475 chr1 249250621 + 28552744 28553020 AluSx4 309 + 10 291 118138 98 1 2 156 0 4 21 chain 3725 chr1 249250621 + 28566817 28566864 MER5A 189 + 32 76 211551 5 3 0 39 chain 29537 chr1 249250621 + 28579416 28579727 AluYb8 318 - 7 318 86493 311 chain 33198 chr1 249250621 + 28580521 28582117 Tigger1 2417 + 1065 2094 78892 146 1153 585 60 0 1 237 chain 25749 chr1 249250621 + 28621457 28621743 AluYb8 318 + 34 318 101090 29 2 0 255 chain 25638 chr1 249250621 + 28655791 28656098 AluSp 311 - 6 311 101546 91 0 1 81 2 0 66 1 0 66 chain 23863 chr1 249250621 + 28656498 28656807 AluSq2 311 + 0 305 111117 49 12 10 75 2 0 171 chain 22834 chr1 249250621 + 28666545 28666836 AluSp 311 + 11 304 116424 115 14 16 162 chain 23207 chr1 249250621 + 28683879 28684485 AluY 311 + 4 283 114654 113 328 0 15 0 1 150 chain 146794 chr1 249250621 + 28709745 28713134 L1PA13 3608 - 111 2433 25045 11 0 3 15 1 0 17 12 8 44 1 9 27 4 1 27 7 6 55 2 0 115 1 0 22 21 18 73 0 1 146 0 188 13 10 12 191 0 1 79 2 1 281 0 1 104 0 1 17 2 0 48 359 31 27 1 0 38 11 15 234 308 0 40 313 0 166 315 0 38 1 0 9 22 24 38 0 4 111 0 2 10 chain 11050 chr1 249250621 + 28716302 28716510 L1MA6 2487 + 2104 2295 156013 107 34 21 28 4 3 13 2 0 15 1 0 4 chain 9300 chr1 249250621 + 28730184 28731177 L1MB8 1703 - 77 503 164062 20 80 26 18 10 193 9 166 0 53 553 15 44 0 9 12 1 0 27 chain 6359 chr1 249250621 + 28739541 28739643 MER1B 344 + 234 344 182319 23 11 19 30 0 1 4 1 0 33 chain 7953 chr1 249250621 + 28749067 28749166 HY3 101 - 1 101 171310 49 0 1 50 chain 24896 chr1 249250621 + 28752897 28753189 AluY 311 + 10 297 105373 77 0 1 43 6 0 166 chain 23709 chr1 249250621 + 28768710 28768991 AluSc5 308 + 15 297 111986 62 0 1 219 chain 45240 chr1 249250621 + 28769513 28770708 L1MA5A 2387 - 93 748 62779 64 28 0 11 10 7 31 2 0 26 2 0 86 497 0 36 1 0 67 15 14 105 8 0 68 0 1 62 0 1 76 chain 3443 chr1 249250621 + 28773822 28773861 MSTA 426 + 385 424 216304 39 chain 2581 chr1 249250621 + 28818007 28818071 MER5B 177 + 92 153 231914 19 19 17 11 1 0 14 chain 5257 chr1 249250621 + 28824118 28824180 MER51B 395 + 235 296 192439 10 1 0 51 chain 17401 chr1 249250621 + 28833876 28834080 U17 202 + 0 202 134506 14 1 0 73 1 0 115 chain 18823 chr1 249250621 + 28835069 28835271 U17 202 + 0 202 130598 202 chain 36436 chr1 249250621 + 28851440 28851893 LTR2 463 - 0 463 74321 333 14 17 55 0 7 51 chain 5420 chr1 249250621 + 28870292 28870392 LTR13 1007 - 0 98 190800 31 23 21 46 chain 29364 chr1 249250621 + 28870540 28870849 AluYb8 318 + 0 309 87225 309 chain 18726 chr1 249250621 + 28876150 28876418 MER1A 529 - 8 286 130889 12 1 0 33 9 20 52 0 3 7 8 5 146 chain 22438 chr1 249250621 + 28897323 28897589 AluSc8 310 + 28 297 118308 104 0 3 162 chain 24506 chr1 249250621 + 28909314 28909610 AluY 311 + 15 305 107507 103 4 0 8 2 0 179 chain 30102 chr1 249250621 + 28912526 28912953 LTR7B 505 + 2 505 84486 106 0 10 37 0 1 19 0 38 12 10 34 19 0 2 71 1 4 7 1 0 79 14 13 51 chain 17892 chr1 249250621 + 28912954 28913170 AluY 311 + 60 277 133122 70 1 2 145 chain 36646 chr1 249250621 + 28913418 28913893 LTR2B 499 - 0 490 74031 180 1 0 12 0 1 165 0 12 11 0 7 26 0 1 22 4 0 48 1 0 5 chain 6444 chr1 249250621 + 28922756 28922835 L1MA3 4352 - 154 233 181681 79 chain 24509 chr1 249250621 + 28945734 28946033 AluY 311 + 11 303 107496 115 4 0 171 3 0 6 chain 3653 chr1 249250621 + 28946098 28946138 MER50B 698 + 494 534 212767 40 chain 5363 chr1 249250621 + 28948183 28948271 LTR23 429 + 311 397 191398 32 1 0 6 9 8 40 chain 4867 chr1 249250621 + 28954910 28954981 L1MB8 1703 + 1515 1588 196616 47 3 5 21 chain 35092 chr1 249250621 + 28977956 28979433 MLT2A2 560 - 0 541 76061 67 1009 70 214 12 15 175 chain 253828 chr1 249250621 + 28980520 28984694 HERVL-int 5654 - 717 3964 16039 39 0 3 872 313 0 408 9 10 175 1 2 4 1 0 192 2 3 342 5 0 153 3 0 86 16 0 252 8 5 6 0 7 102 306 0 373 14 20 147 307 7 9 0 1 29 chain 13103 chr1 249250621 + 28999075 28999225 L1PA5 6144 - 0 150 147831 150 chain 29222 chr1 249250621 + 29001220 29001530 AluYa5 310 - 1 310 87947 216 1 0 93 chain 7966 chr1 249250621 + 29004366 29004790 LTR9B 643 - 83 197 171243 47 316 5 15 0 1 46 chain 21917 chr1 249250621 + 29008218 29008505 AluSp 311 - 16 301 120554 144 21 19 122 chain 21481 chr1 249250621 + 29011103 29011362 L1PA8A 6298 + 6032 6290 122217 154 1 0 104 chain 29444 chr1 249250621 + 29022168 29022479 AluYa5 310 + 0 310 86884 123 1 0 187 chain 25833 chr1 249250621 + 29039382 29039687 AluY 311 + 0 300 100733 122 0 1 9 6 0 168 chain 24084 chr1 249250621 + 29048718 29049013 AluSp 311 - 10 303 109838 181 1 0 102 1 0 10 chain 19200 chr1 249250621 + 29071975 29072224 AluSp 311 + 12 277 129524 62 0 8 155 6 14 26 chain 22051 chr1 249250621 + 29087971 29088247 AluSp 311 + 5 285 120011 32 5 4 211 0 5 28 chain 17461 chr1 249250621 + 29103167 29103386 AluSc8 310 + 82 304 134357 50 0 3 16 0 2 5 2 0 146 chain 38866 chr1 249250621 + 29107718 29108197 LTR2 463 - 0 463 70921 313 17 0 14 0 1 135 chain 8437 chr1 249250621 + 29131871 29131971 THE1B 368 - 264 364 168643 100 chain 86005 chr1 249250621 + 29153053 29155052 Tigger1 2417 - 122 1343 41155 42 8 7 23 1 0 11 1 0 84 5 8 149 0 3 103 2 0 26 498 0 18 0 1 52 6 0 147 318 33 43 14 18 77 0 1 4 1 0 64 0 1 290 1 5 11 chain 32258 chr1 249250621 + 29163371 29163847 MER1A 529 - 0 462 80425 58 37 28 278 9 0 75 6 10 13 chain 5305 chr1 249250621 + 29164343 29164442 MLT1C 463 - 301 400 191969 18 5 10 10 6 0 17 1 2 42 chain 3644 chr1 249250621 + 29172054 29172094 L1MB3 1562 - 1004 1044 212894 40 chain 25098 chr1 249250621 + 29178101 29178392 AluSp 311 + 0 307 104301 220 0 16 71 chain 5622 chr1 249250621 + 29232138 29232212 MLT1A 405 + 314 388 188853 23 1 0 11 0 1 39 chain 3686 chr1 249250621 + 29281477 29281523 Charlie23a 306 - 140 187 212150 4 0 1 42 chain 4601 chr1 249250621 + 29288876 29288929 MADE1 96 + 42 95 199604 53 chain 23430 chr1 249250621 + 29302198 29302473 AluY 311 + 0 303 113475 126 0 1 28 0 27 121 chain 31553 chr1 249250621 + 29308409 29308755 L1PA4 6152 - 1 348 81558 154 0 1 192 chain 5418 chr1 249250621 + 29309156 29309233 Ricksha_0 1343 + 954 1035 190822 24 1 6 46 1 0 5 chain 32642 chr1 249250621 + 29312345 29312694 L1HS 6032 - 4 353 79776 349 chain 18879 chr1 249250621 + 29346623 29346856 AluSg7 307 - 52 285 130429 103 0 3 6 8 5 116 chain 24682 chr1 249250621 + 29354352 29354635 AluSp 311 - 28 311 106539 283 chain 5528 chr1 249250621 + 29361279 29361397 L1MA8 2339 + 2160 2268 189757 36 7 1 30 13 10 19 1 0 12 chain 4710 chr1 249250621 + 29421114 29421181 L1PREC2 3366 - 829 895 198398 34 2 1 31 chain 108272 chr1 249250621 + 29456756 29458154 LTR12C 1709 - 0 1709 34625 84 1 0 67 1 0 237 45 23 70 22 15 95 3 1 5 1 0 98 0 278 269 1 0 86 0 43 37 7 32 269 chain 43126 chr1 249250621 + 29483242 29483812 LTR14 556 - 0 552 65261 91 1 0 126 17 0 230 5 8 14 5 0 75 0 2 6 chain 22310 chr1 249250621 + 29485351 29485620 AluSg7 307 + 0 283 118877 77 0 15 40 1 0 151 chain 4429 chr1 249250621 + 29537878 29538020 MER58A 224 + 53 201 201601 32 79 85 31 chain 3102 chr1 249250621 + 29581980 29582016 MIR 256 + 73 109 222880 36 chain 37535 chr1 249250621 + 29628097 29628525 L1PA5 6144 - 0 428 72771 428 chain 8258 chr1 249250621 + 29628564 29628657 Tigger3b 1229 + 425 518 169635 93 chain 2583 chr1 249250621 + 29659437 29659503 LTR41 747 + 668 733 231864 26 23 22 17 chain 73012 chr1 249250621 + 29664593 29665559 LTR5_Hs 974 - 0 974 47022 103 20 18 19 8 15 26 11 14 123 1 0 166 11 11 11 0 1 177 0 1 122 1 0 167 chain 73382 chr1 249250621 + 29685844 29686802 LTR5_Hs 974 + 0 974 46845 115 5 13 41 1 0 120 0 1 177 0 1 188 1 0 123 11 14 26 8 15 27 12 10 103 chain 6941 chr1 249250621 + 29700069 29700162 L1MA4 2864 - 702 794 177881 41 5 4 47 chain 34084 chr1 249250621 + 29702588 29703033 MLT2A1 477 - 0 477 77492 39 4 0 14 3 39 136 0 1 43 0 1 24 0 1 10 5 2 167 chain 27823 chr1 249250621 + 29715026 29715381 THE1C 375 - 1 359 93617 150 0 1 40 0 2 165 chain 2961 chr1 249250621 + 29723101 29723138 MIR 256 + 107 144 225860 37 chain 429381 chr1 249250621 + 29726571 29731505 L1PA5 6144 - 9 6144 9323 104 1 0 326 0 1 995 9 12 1193 0 2 16 0 4 30 7 8 267 2 1 475 5 0 9 8 13 240 0 1 124 0 1 216 0 3 150 0 1 85 0 1185 559 0 1 113 chain 10956 chr1 249250621 + 29745642 29745795 L1PA8 5853 - 0 151 156376 93 1 0 19 2 1 38 chain 2935 chr1 249250621 + 29764129 29764165 MSTB1 431 + 18 54 226411 36 chain 3429 chr1 249250621 + 29873882 29873918 MIRb 242 + 96 132 216580 36 chain 10744 chr1 249250621 + 30038962 30039124 MER107 203 - 42 195 157225 9 5 0 8 7 2 21 0 1 112 chain 36970 chr1 249250621 + 30062443 30062895 L1PA7 6471 - 2 456 73552 147 12 14 293 chain 27325 chr1 249250621 + 30092580 30092890 AluYg6 310 - 1 310 95192 183 1 0 126 chain 4055 chr1 249250621 + 30116836 30117021 MER58A 224 + 1 187 206570 23 27 26 27 87 89 21 chain 22299 chr1 249250621 + 30127408 30127762 MSTA 426 + 22 388 118913 81 0 2 23 2 1 9 5 12 54 6 0 8 0 4 20 15 13 51 9 17 71 chain 72788 chr1 249250621 + 30129794 30130594 L1PA2 6032 + 5228 6032 47130 787 0 4 13 chain 40850 chr1 249250621 + 30188535 30189044 MER9a3 513 + 0 513 68095 17 0 3 90 0 1 145 1 0 177 2 3 77 chain 39064 chr1 249250621 + 30190129 30190625 MER9a3 513 - 0 498 70650 76 3 4 177 1 0 145 6 7 54 0 1 34 chain 27427 chr1 249250621 + 30190764 30191119 THE1A 353 - 0 353 94885 46 1 0 5 0 1 103 1 0 87 1 0 111 chain 5023 chr1 249250621 + 30251590 30251651 MER45B 1037 - 880 941 194901 61 chain 31452 chr1 249250621 + 30267047 30267571 MLT2A1 477 + 0 477 81728 41 0 1 100 0 1 26 1 5 150 1 0 46 122 70 37 chain 399650 chr1 249250621 + 30267571 30272426 HERVL-int 5654 + 0 5654 10106 52 0 1 305 3 2 139 0 1 96 0 2 57 1 0 302 5 10 156 0 1 379 15 4 282 0 1 957 3 4 478 12 13 1232 1 799 161 0 1 64 0 1 20 1 0 28 1 0 99 0 1 6 chain 30485 chr1 249250621 + 30272430 30272893 MLT2A1 477 + 4 477 83462 120 0 1 15 0 1 28 1 5 150 1 0 31 5 9 21 8 0 16 35 44 32 chain 2777 chr1 249250621 + 30342200 30342375 MLT1G-int 653 - 290 480 229075 28 115 129 15 4 5 13 chain 26648 chr1 249250621 + 30353381 30354238 MER4A 717 + 0 715 97488 53 2 1 15 7 6 21 0 104 126 0 11 25 0 1 37 1 3 33 0 2 38 434 174 18 6 7 34 1 0 6 chain 3415 chr1 249250621 + 30360228 30360295 MER66-int 1576 + 264 330 216863 22 14 13 31 chain 48680 chr1 249250621 + 30360332 30360897 L1PA7 6471 + 5902 6470 59974 176 0 1 57 0 1 319 1 2 12 chain 26565 chr1 249250621 + 30395722 30396124 MSTA 426 + 0 414 97785 103 0 2 24 1 0 14 0 7 54 6 0 7 3 7 18 15 13 51 9 17 97 chain 43514 chr1 249250621 + 30455230 30455899 LTR12F 595 - 0 595 64794 193 0 1 186 23 14 16 0 8 32 2 0 11 67 0 29 7 2 103 chain 43404 chr1 249250621 + 30458255 30459004 LTR66 600 + 0 578 64931 348 142 0 55 12 0 42 0 1 11 3 20 12 1 0 1 34 0 88 chain 45867 chr1 249250621 + 30467702 30468234 L1PA6 6164 - 6 538 62159 532 chain 259439 chr1 249250621 + 30468234 30471356 L1PA5 6144 + 552 5886 15735 30 1 0 229 0 17 126 25 0 211 13 4 66 1 0 544 21 2247 632 1 0 356 1 0 349 0 7 516 chain 33220 chr1 249250621 + 30479353 30480496 MER84 505 - 8 503 78849 79 0 1 1 333 0 15 0 4 9 7 3 215 1 2 27 13 16 17 320 0 106 chain 9069 chr1 249250621 + 30489980 30490088 L1PA8 5853 - 5 112 165220 88 1 0 19 chain 8265 chr1 249250621 + 30504812 30504912 LOR1a 498 + 0 100 169594 100 chain 20983 chr1 249250621 + 30505794 30506101 L1MA4 2864 - 172 483 123980 21 3 0 5 0 4 19 1 0 62 0 4 11 0 1 64 18 17 103 chain 39515 chr1 249250621 + 30565429 30566262 LTR10A 586 - 0 586 70005 77 8 6 75 7 10 25 260 0 110 2 3 8 0 10 50 9 10 57 2 1 28 5 6 110 chain 26626 chr1 249250621 + 30570769 30571135 THE1B 368 - 0 368 97571 49 0 10 9 2 0 47 1 0 53 2 0 31 1 0 156 2 0 13 chain 10202 chr1 249250621 + 30582282 30582467 L1PB1 5432 + 5236 5400 159612 44 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 9 chain 7192 chr1 249250621 + 30589212 30589304 MLT1A0 366 + 274 366 176130 92 chain 24545 chr1 249250621 + 30615280 30615631 THE1A 353 - 12 346 107287 127 13 12 92 1 0 25 16 1 77 chain 127709 chr1 249250621 + 30615638 30617184 THE1A-int 1579 - 0 1547 28642 224 1 2 245 0 1 6 1 0 1069 chain 62064 chr1 249250621 + 30626715 30627482 MER4E1 777 - 7 777 51870 220 1 7 73 2 1 226 0 1 217 3 0 25 chain 162459 chr1 249250621 + 30627947 30629884 L1PA7 6471 - 4 1957 23006 153 12 13 4 1 0 673 0 3 216 0 1 115 0 2 434 1 5 176 0 4 60 1 3 91 chain 2951 chr1 249250621 + 30629885 30629918 L1PA7 6471 + 4443 4476 226060 33 chain 15703 chr1 249250621 + 30656343 30656548 MER47A 366 - 38 240 139256 154 3 0 48 chain 24530 chr1 249250621 + 30666595 30667545 MER50 708 - 23 708 107377 65 0 3 76 4 0 13 554 303 30 5 0 28 9 13 48 0 1 34 23 10 61 chain 26781 chr1 249250621 + 30676524 30676902 LTR7B 505 + 0 495 97044 105 0 10 56 13 81 59 0 41 89 14 13 20 0 1 10 2 0 10 chain 48933 chr1 249250621 + 30679482 30680122 HERVH-int 3825 + 3186 3825 59786 55 26 25 559 chain 25978 chr1 249250621 + 30681576 30681960 LTR7B 505 + 0 505 100106 94 0 3 8 0 10 56 18 31 34 1 21 21 0 74 17 0 1 71 14 13 20 0 1 30 chain 53331 chr1 249250621 + 30681982 30683033 MER4E1 777 + 0 759 56814 18 1 2 65 0 3 90 30 23 61 0 1 64 5 24 115 309 0 293 chain 31356 chr1 249250621 + 30684484 30684996 MLT2A2 560 + 0 560 81893 118 100 99 88 1 34 67 0 11 63 0 1 69 0 4 6 chain 4896 chr1 249250621 + 30704839 30704910 LTR41 747 - 8 83 196303 30 2 1 22 0 5 17 chain 5709 chr1 249250621 + 30712765 30712853 MER4A1_ 611 + 0 89 188027 21 8 9 59 chain 16739 chr1 249250621 + 30755590 30755812 MER30 238 + 0 238 136284 107 4 20 111 chain 3429 chr1 249250621 + 30757945 30757981 MIRb 242 - 110 146 216581 36 chain 38626 chr1 249250621 + 30769407 30769989 MER41C 542 + 0 527 71258 163 5 7 151 78 21 185 chain 24706 chr1 249250621 + 30770189 30770582 MSTA 426 + 0 403 106397 98 1 2 30 16 21 52 7 12 12 37 36 140 chain 90621 chr1 249250621 + 30782028 30783017 L1PA3long 6157 + 5168 6157 39417 989 chain 54543 chr1 249250621 + 30819215 30819861 SVA_A 1864 + 1245 1864 56000 70 40 12 388 0 1 148 chain 79164 chr1 249250621 + 30821355 30822520 L1PA14 3548 - 92 1246 43971 23 9 0 19 1 0 15 8 6 15 4 2 3 0 1 31 14 9 37 10 34 124 1 0 6 2 0 13 8 4 21 0 1 87 9 5 47 2 0 14 3 1 24 3 0 165 0 1 29 0 1 30 1 0 101 2 1 46 4 3 64 0 1 170 chain 13147 chr1 249250621 + 30897868 30898107 MER39 703 - 60 300 147655 131 55 57 22 1 0 30 chain 125100 chr1 249250621 + 30909414 30910975 THE1A-int 1579 + 0 1573 29361 568 1 0 91 0 1 4 1 0 488 5 17 273 0 1 130 chain 529471 chr1 249250621 + 30911219 30916972 L1PA2 6032 + 2 6031 4248 119 0 275 432 0 2 2334 1 0 2867 chain 10187 chr1 249250621 + 30917010 30917143 THE1A 353 + 220 353 159686 8 0 1 5 2 1 118 chain 539213 chr1 249250621 + 30926434 30932565 L1PA5 6144 - 0 6139 2943 7 2 0 1208 1 0 43 0 1 534 0 4 661 4 6 6 0 1 302 1 0 117 0 1 83 1 0 45 1 2 990 1 2 1104 1 0 111 0 1 47 1 3 860 chain 51652 chr1 249250621 + 30954367 30955000 LTR14B 630 + 0 630 57864 349 4 0 229 15 16 36 chain 544087 chr1 249250621 + 30966236 30972403 L1PA4 6152 + 0 6151 2199 580 1 0 256 17 0 604 1 0 446 0 1 181 1 0 1425 1 2 195 0 1 679 0 1 1780 chain 2756 chr1 249250621 + 30989570 30989599 MIR 256 - 130 159 229360 29 chain 5084 chr1 249250621 + 30993600 30993676 L1MA8 2339 - 143 216 194237 34 4 1 38 chain 15388 chr1 249250621 + 31025592 31025955 MSTA 426 + 0 403 140237 53 23 22 33 20 48 50 4 0 10 51 47 30 28 49 61 chain 31180 chr1 249250621 + 31035453 31035946 MER51E 476 + 0 476 82199 237 74 68 103 6 1 6 2 0 17 7 3 41 chain 87490 chr1 249250621 + 31040660 31041597 L1HS 6032 + 5079 6016 40569 937 chain 22594 chr1 249250621 + 31047840 31048201 THE1B 368 + 1 368 117608 168 1 0 21 18 25 15 1 0 12 1 0 62 37 39 25 chain 34254 chr1 249250621 + 31050114 31050500 L1P1 4361 - 33 417 77272 23 1 0 155 1 0 206 chain 144901 chr1 249250621 + 31050720 31052308 L1PA3long 6157 + 4562 6150 25342 1588 chain 348754 chr1 249250621 + 31054143 31058274 L1PA6 6164 - 8 4181 11645 140 0 8 8 11 2 600 1 30 45 0 8 7 4 1 263 0 1 1793 6 10 273 0 3 84 0 1 896 chain 5067 chr1 249250621 + 31071281 31071341 MIRb 242 + 83 143 194454 60 chain 5796 chr1 249250621 + 31098325 31098402 L1MCb 1641 - 1396 1472 187181 66 1 0 10 chain 3575 chr1 249250621 + 31129840 31129881 MIR 256 - 117 158 214044 41 chain 2942 chr1 249250621 + 31152997 31153032 MER52A 1651 + 784 818 226309 6 1 0 28 chain 4730 chr1 249250621 + 31201528 31201581 LTR16E1 515 + 431 484 198169 53 chain 3225 chr1 249250621 + 31216797 31216842 MIRb 242 + 69 111 220505 37 3 0 5 chain 3665 chr1 249250621 + 31264855 31265264 MLT1F2 592 - 0 460 212494 33 1 0 5 333 95 10 0 290 27 chain 35570 chr1 249250621 + 31309882 31310347 MER4A1 472 - 0 464 75450 79 0 2 82 12 8 58 4 5 230 chain 41139 chr1 249250621 + 31318281 31318827 MER41A 554 + 10 554 67733 183 1 0 40 10 6 191 0 1 84 4 5 16 0 1 17 chain 26081 chr1 249250621 + 31324555 31324847 AluSp 311 + 2 294 99703 292 chain 27026 chr1 249250621 + 31335117 31335479 Tigger3b 1229 + 215 580 96202 55 0 4 21 1 0 33 1 4 47 0 1 170 1 0 18 3 0 12 chain 6526 chr1 249250621 + 31372847 31372925 LTR5B 1012 - 933 1011 181045 78 chain 6019 chr1 249250621 + 31432988 31433145 Tigger4a 237 - 0 159 185063 11 0 1 5 1 0 36 7 8 17 51 52 29 chain 12331 chr1 249250621 + 31490265 31490482 MER30 238 + 0 238 150890 16 13 31 62 4 0 7 4 0 12 0 10 49 5 6 45 chain 16334 chr1 249250621 + 31506220 31506512 AluYb8 318 - 0 318 137386 149 95 121 48 chain 24938 chr1 249250621 + 31508320 31508621 AluSp 311 + 4 305 105119 301 chain 23926 chr1 249250621 + 31510615 31510940 AluY 311 + 0 297 110767 78 28 1 44 1 0 174 chain 24806 chr1 249250621 + 31516966 31517241 AluYf4 310 + 0 275 105859 275 chain 23608 chr1 249250621 + 31551963 31552261 AluY 311 + 0 303 112528 70 0 3 59 0 1 7 3 4 159 chain 6605 chr1 249250621 + 31557575 31558690 MER49 923 + 255 733 180416 72 0 1 4 1007 369 32 chain 26351 chr1 249250621 + 31597009 31597310 AluYk4 311 - 8 311 98615 27 0 2 274 chain 32318 chr1 249250621 + 31611525 31611998 MER41A 554 - 91 554 80340 16 1 0 20 0 1 59 1 0 4 35 32 230 9 0 30 1 4 67 chain 23276 chr1 249250621 + 31616090 31616367 AluSp 311 + 2 279 114315 277 chain 3998 chr1 249250621 + 31639251 31639339 MER20 218 + 0 86 207410 13 23 27 39 6 0 7 chain 8207 chr1 249250621 + 31645170 31645274 LTR8 732 + 277 381 169910 104 chain 161079 chr1 249250621 + 31648616 31650506 SVA_D 2077 + 6 2077 23179 12 1 7 11 17 0 9 1 0 507 0 1 2 0 40 289 0 83 69 0 2 157 49 0 108 0 98 522 0 20 116 2 0 18 chain 3420 chr1 249250621 + 31649691 31649740 SVA_D 2077 + 1017 1068 75511 19 0 2 30 chain 21726 chr1 249250621 + 31675264 31675540 AluY 311 + 22 301 121298 110 1 2 134 0 1 7 5 6 19 chain 24720 chr1 249250621 + 31694295 31694569 AluSc 308 - 23 297 106328 274 chain 3140 chr1 249250621 + 31715631 31715666 MER45A 178 - 135 170 222186 35 chain 23840 chr1 249250621 + 31726360 31726654 AluSp 311 - 8 301 111253 9 3 0 90 0 1 36 0 1 156 chain 3139 chr1 249250621 + 31873121 31873158 L1MB7 1623 + 1386 1423 222194 37 chain 22436 chr1 249250621 + 31911141 31911410 AluY 311 + 23 295 118318 109 0 1 142 0 2 18 chain 192285 chr1 249250621 + 31923381 31926353 L1PB1 5432 - 5 2659 19839 5 2 0 18 1 0 13 2 1 20 1 0 20 32 23 19 25 12 60 1 0 15 2 1 53 2 0 8 5 1 12 1 0 9 1 2 19 3 0 11 1 2 61 1 8 29 1 0 186 4 12 181 3 0 237 15 14 249 0 1 125 7 10 50 312 0 202 0 10 133 1 9 149 8 6 597 16 16 33 0 1 11 chain 40259 chr1 249250621 + 31926361 31926948 LTR10A 586 - 0 586 68931 30 0 1 265 14 53 10 10 0 14 0 1 13 35 6 81 6 2 36 0 1 73 chain 52617 chr1 249250621 + 31929935 31930588 HERVIP10FH-int 2884 - 2077 2735 57228 16 0 1 72 0 1 80 1 0 41 0 4 71 0 1 118 4 3 186 1 0 23 0 1 40 chain 34753 chr1 249250621 + 31930795 31931366 LTR10E 629 + 0 561 76539 21 4 0 81 1 0 62 0 2 45 0 19 66 5 4 22 1 0 71 40 14 48 13 14 8 0 1 10 21 21 52 chain 34638 chr1 249250621 + 31939531 31940095 LTR10E 629 + 0 557 76705 102 1 0 62 0 2 62 0 2 84 23 5 107 14 18 11 53 54 40 0 3 5 chain 39974 chr1 249250621 + 31940200 31941016 HERVIP10F-int 4088 - 1756 2589 69356 7 1 0 14 2 1 61 16 15 84 1 0 11 0 1 59 1 0 14 1 0 170 10 36 106 123 119 20 94 94 21 chain 35189 chr1 249250621 + 31944786 31945246 L1PBa 3878 - 890 1353 75933 182 0 1 71 0 1 4 0 4 15 1 0 5 8 6 174 chain 118846 chr1 249250621 + 31945612 31947164 THE1A-int 1579 - 8 1579 31476 506 0 1 269 2 0 178 2 11 310 41 42 19 3 9 108 0 3 90 0 1 24 chain 21860 chr1 249250621 + 31947524 31947824 THE1A 353 - 46 353 120782 31 2 0 23 9 20 31 1 0 92 1 0 110 chain 44117 chr1 249250621 + 31953205 31953729 MER9a2 513 + 0 513 64062 259 16 5 249 chain 33514 chr1 249250621 + 31955717 31956182 LTR2B 499 - 0 490 78387 182 1 0 8 22 23 156 0 19 39 3 0 38 0 10 10 1 0 5 chain 21428 chr1 249250621 + 31962675 31962932 L1PA8A 6298 - 551 811 122415 177 0 2 12 0 1 68 chain 53011 chr1 249250621 + 31963136 31963909 L1MA2 4263 - 150 909 57011 9 1 0 36 24 17 85 1 0 8 1 0 152 13 10 121 17 16 65 12 10 10 2 0 151 0 3 61 0 1 4 chain 45782 chr1 249250621 + 31965294 31965807 MER9a2 513 - 0 513 62248 513 chain 213485 chr1 249250621 + 31968057 31970417 L1PA5 6144 - 1 2362 18255 1975 0 1 385 chain 9589 chr1 249250621 + 31970418 31970525 U6 107 - 0 107 162642 107 chain 17646 chr1 249250621 + 31977508 31977776 LTR10A 586 - 266 563 133851 37 1 2 69 9 10 6 2 0 55 1 0 17 3 24 25 0 1 7 0 8 36 chain 34963 chr1 249250621 + 31983026 31983444 LTR1 825 - 0 417 76241 288 1 0 129 chain 52977 chr1 249250621 + 31983457 31984082 HERVL-int 5654 + 5028 5654 57031 406 0 1 219 chain 33555 chr1 249250621 + 31984086 31984513 MLT2A1 477 + 4 470 78311 33 7 8 97 0 1 26 1 5 150 1 0 62 0 34 50 chain 25537 chr1 249250621 + 32000047 32000350 AluYk4 311 + 0 300 102073 63 3 1 62 1 0 174 chain 30213 chr1 249250621 + 32023547 32023865 AluYb8 318 - 0 318 84157 318 chain 59395 chr1 249250621 + 32030906 32031646 L1PA8 5853 + 5119 5853 53180 442 2 1 46 2 0 74 1 0 11 2 0 5 5 7 38 1 0 17 1 0 93 chain 36695 chr1 249250621 + 32054854 32056305 MER41A 554 - 8 554 73964 119 602 0 15 0 4 93 0 10 91 0 1 26 320 0 11 6 7 76 5 6 87 chain 24785 chr1 249250621 + 32055270 32055564 AluSg 306 + 3 297 105967 294 chain 20442 chr1 249250621 + 32065562 32065826 AluSg 306 + 9 289 125779 41 13 29 210 chain 5569 chr1 249250621 + 32071518 32071728 LTR40a 516 - 71 266 189390 62 128 113 20 chain 3480 chr1 249250621 + 32086046 32086142 MIR 256 + 105 232 215649 27 43 74 26 chain 2977 chr1 249250621 + 32240179 32240282 L2a 937 - 171 274 225487 25 57 57 21 chain 23585 chr1 249250621 + 32304403 32304673 AluSp 311 + 11 297 112659 209 0 16 61 chain 28322 chr1 249250621 + 32307608 32307905 AluYd8 298 - 1 298 91859 297 chain 54661 chr1 249250621 + 32317796 32318424 L1PA5 6144 - 4 631 55929 168 2 1 458 chain 6765 chr1 249250621 + 32355443 32355593 MLT1C 463 + 27 169 179206 6 2 0 72 50 44 20 chain 127069 chr1 249250621 + 32359643 32361754 L1PA16 3655 + 1763 3568 28799 26 40 30 57 1 5 118 11 11 293 8 4 252 2 1 5 0 1 71 0 1 24 15 14 110 3 12 54 0 7 24 0 9 6 1 0 19 2 0 6 318 0 59 0 2 220 1 0 86 3 1 81 4 5 191 chain 22928 chr1 249250621 + 32391073 32391372 AluY 311 + 0 294 115971 51 15 11 15 2 1 216 chain 26465 chr1 249250621 + 32395657 32395955 AluYf4 310 + 0 297 98185 213 1 0 84 chain 26664 chr1 249250621 + 32411495 32411801 AluSp 311 - 5 311 97439 306 chain 23410 chr1 249250621 + 32469573 32469870 AluSg7 307 - 1 307 113600 174 0 1 45 4 12 74 chain 12403 chr1 249250621 + 32483201 32483507 AluSp 311 - 5 311 150623 132 139 5 18 0 134 17 chain 25463 chr1 249250621 + 32501764 32502069 AluYk4 311 - 4 311 102394 152 6 9 14 1 0 132 chain 22645 chr1 249250621 + 32533178 32533486 AluY 311 + 8 301 117351 56 2 0 11 17 7 41 7 4 174 chain 5927 chr1 249250621 + 32544700 32544773 7SLRNA 320 - 41 114 185921 73 chain 24683 chr1 249250621 + 32564062 32564354 AluYk4 311 + 11 296 106533 121 1 0 101 6 0 63 chain 17403 chr1 249250621 + 32564846 32565062 L1PA6 6164 + 5930 6149 134494 84 0 3 132 chain 24617 chr1 249250621 + 32573063 32573362 AluSq10 312 + 8 312 106906 35 0 7 53 1 0 154 1 0 55 chain 25912 chr1 249250621 + 32580074 32580453 Tigger1 2417 - 1160 1546 100365 44 1 4 16 38 39 115 0 3 165 chain 22659 chr1 249250621 + 32583517 32583824 AluSp 311 - 10 311 117280 19 10 5 71 1 2 73 2 0 131 chain 22954 chr1 249250621 + 32600686 32600967 AluSp 311 - 30 311 115833 281 chain 26413 chr1 249250621 + 32603863 32604167 AluSp 311 + 0 305 98359 77 0 1 227 chain 8978 chr1 249250621 + 32607469 32607583 MLT1B 390 - 0 114 165722 114 chain 25251 chr1 249250621 + 32628451 32628731 AluY 311 + 28 309 103472 104 0 1 176 chain 24545 chr1 249250621 + 32750626 32750916 AluSp 311 + 4 296 107283 27 0 1 78 0 1 185 chain 11560 chr1 249250621 + 32795066 32795258 L1M3e 1964 - 494 691 154067 14 14 19 35 19 19 110 chain 21677 chr1 249250621 + 32815405 32815652 AluY 311 + 5 280 121478 127 0 1 18 0 27 102 chain 27928 chr1 249250621 + 32870980 32871280 AluYa5 310 + 0 299 93249 132 1 0 167 chain 144567 chr1 249250621 + 32884305 32887082 HUERS-P3b-int 2065 + 13 2031 25387 81 4 0 26 20 0 11 12 24 140 4 0 13 81 6 116 624 0 115 7 0 33 3 0 196 1 0 54 1 0 27 1 0 127 0 4 223 2 1 10 0 1 250 1 0 44 25 2 82 0 2 13 1 0 25 1 0 89 3 1 50 0 1 21 2 0 19 4 1 59 22 18 43 2 1 89 chain 3913 chr1 249250621 + 32897196 32897244 L1MB5 1630 - 19 66 208647 10 1 0 37 chain 30663 chr1 249250621 + 32897937 32898350 LTR7 482 + 0 482 83099 68 31 18 15 0 50 74 4 36 221 chain 289996 chr1 249250621 + 32898352 32901979 HERVH-int 3825 + 0 3825 14017 336 1 0 39 0 1 154 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 13 7 1 13 2 1 13 3 0 13 15 12 42 0 20 61 0 1 4 2 0 69 2 0 373 15 0 203 9 0 29 0 2 10 1 0 616 8 13 44 0 4 706 0 1 198 27 29 39 8 218 260 0 2 225 chain 31844 chr1 249250621 + 32903238 32903626 LTR7 482 + 0 469 81098 68 6 56 106 0 31 208 chain 42520 chr1 249250621 + 32903731 32904429 MER4B 649 + 0 632 65993 24 20 23 65 1 0 4 16 17 41 0 1 11 2 0 174 0 2 19 55 5 33 11 1 38 7 3 112 6 0 59 chain 25547 chr1 249250621 + 32904702 32905002 AluSp 311 - 9 309 102003 300 chain 32842 chr1 249250621 + 32907904 32908687 LTR10F 562 - 0 562 79472 264 2 3 21 0 1 5 35 7 26 0 3 7 0 112 42 310 0 71 chain 200853 chr1 249250621 + 32908755 32911745 HERVIP10FH-int 2884 - 13 2734 19154 16 2 0 9 206 22 35 14 8 10 1 0 14 14 13 39 2 1 65 1 0 322 0 9 34 1 0 27 1 0 17 0 4 176 10 9 72 0 4 140 0 5 37 1 0 19 1 0 3 11 0 41 20 8 43 132 79 122 23 17 45 1 0 9 1 0 8 16 10 172 1 0 999 18 19 39 chain 39785 chr1 249250621 + 32915011 32915512 LTR10F 562 - 2 562 69648 295 0 55 8 2 13 20 7 0 169 chain 25908 chr1 249250621 + 32918179 32918470 AluYf4 310 + 3 294 100390 291 chain 19486 chr1 249250621 + 32921673 32921986 MER66B 489 + 44 337 128703 139 12 11 47 31 9 11 0 4 23 1 0 49 chain 62517 chr1 249250621 + 32924178 32925072 MER11A 1151 + 159 1145 51672 71 1 0 64 0 11 21 0 2 203 0 13 107 0 1 21 17 20 10 3 4 38 0 4 22 13 12 31 1 2 18 1 59 43 6 5 6 0 1 46 3 4 87 4 3 57 chain 3071 chr1 249250621 + 32929616 32929650 MLT1C 463 + 134 168 223541 34 chain 12662 chr1 249250621 + 32949146 32949293 L1PA5 6144 + 5984 6131 149597 147 chain 29163 chr1 249250621 + 32950146 32950563 MSTA 426 + 2 426 88235 98 20 25 7 2 0 27 0 4 21 1 0 4 8 9 229 chain 10068 chr1 249250621 + 32969079 32969201 AluSz6 309 + 17 139 160232 122 chain 22655 chr1 249250621 + 32970467 32970853 THE1C 375 + 0 374 117303 55 16 4 24 33 34 53 11 14 14 6 0 6 0 3 143 1 0 24 chain 21334 chr1 249250621 + 32982021 32982353 MER1B 344 + 0 344 122741 17 35 41 204 18 24 58 chain 8837 chr1 249250621 + 32984284 32984398 Tigger3b 1229 - 538 656 166456 36 0 4 78 chain 21117 chr1 249250621 + 33025501 33025903 MSTA 426 - 0 426 123499 108 10 18 22 86 96 32 12 17 19 0 1 113 chain 4837 chr1 249250621 + 33027352 33027423 MLT1C 463 - 330 394 196916 9 6 0 49 1 0 6 chain 12718 chr1 249250621 + 33079830 33079980 MER4E 760 - 609 760 149386 133 0 1 17 chain 24214 chr1 249250621 + 33080744 33081025 AluSp 311 - 19 300 109124 281 chain 20366 chr1 249250621 + 33082961 33083245 AluSg7 307 - 21 307 126008 143 11 12 25 0 1 70 14 14 21 chain 15251 chr1 249250621 + 33091822 33092018 Tigger3a 397 + 167 374 140628 109 0 11 87 chain 2590 chr1 249250621 + 33092449 33092490 MER58B 340 + 75 114 231823 25 3 0 7 0 1 6 chain 20743 chr1 249250621 + 33093663 33093948 AluSp 311 + 0 273 124809 50 28 15 199 0 1 8 chain 8238 chr1 249250621 + 33105551 33105652 HY3 101 + 0 101 169739 101 chain 32766 chr1 249250621 + 33107594 33108353 MER4E1 777 + 5 461 79584 20 1 0 130 11 4 59 314 0 113 1 20 110 chain 45140 chr1 249250621 + 33109509 33110065 LTR6B 557 - 0 557 62877 22 0 1 32 1 2 6 0 1 98 1 0 35 0 1 99 1 0 210 1 0 50 chain 7220 chr1 249250621 + 33130480 33130579 Tigger1a_Art 216 - 111 209 175943 56 2 1 41 chain 78347 chr1 249250621 + 33132288 33133254 LTR13A 966 + 0 966 44354 128 0 1 192 0 1 69 3 5 25 4 0 241 2 0 6 0 2 29 0 1 180 1 0 86 chain 7307 chr1 249250621 + 33135971 33136071 MER85 139 + 0 116 175388 49 0 3 6 0 3 29 0 10 16 chain 25064 chr1 249250621 + 33152689 33152977 AluSq10 312 + 11 298 104489 122 1 0 165 chain 10611 chr1 249250621 + 33171930 33172071 MER21B 843 - 369 517 157773 27 0 8 23 1 0 90 chain 29450 chr1 249250621 + 33192593 33192902 AluYa5 310 - 1 310 86840 309 chain 23660 chr1 249250621 + 33203767 33204061 AluSp 311 - 9 300 112250 5 3 0 112 0 1 52 1 0 121 chain 5496 chr1 249250621 + 33251511 33251608 MER47A 366 - 210 309 190093 24 1 6 33 12 9 27 chain 23390 chr1 249250621 + 33254044 33254323 AluSp 311 - 23 303 113696 11 0 2 83 1 0 184 chain 67461 chr1 249250621 + 33266855 33269339 Tigger1 2417 - 0 1546 49467 52 14 30 7 0 1 48 2 0 14 11 9 25 15 18 73 1 0 285 0 3 134 1497 537 39 0 1 90 9 12 168 chain 28929 chr1 249250621 + 33267539 33267847 AluYa5 310 - 2 310 89332 308 chain 133498 chr1 249250621 + 33269339 33270876 SVA_B 1603 - 1 1603 27320 11 2 0 587 0 36 48 4 0 28 0 40 662 3 7 142 0 2 6 23 14 6 2 0 13 chain 51657 chr1 249250621 + 33277919 33278924 MER4D0 881 + 147 868 57860 205 0 2 13 1 0 21 1 0 4 0 1 5 3 2 109 308 0 37 0 10 72 19 32 10 0 1 197 chain 24931 chr1 249250621 + 33303668 33303964 AluYk4 311 + 8 311 105158 129 11 18 156 chain 25095 chr1 249250621 + 33307056 33307354 AluSp 311 + 8 306 104318 298 chain 5930 chr1 249250621 + 33307925 33308107 L1ME1 1623 - 997 1268 185884 63 92 181 27 chain 24550 chr1 249250621 + 33312381 33312671 AluSp 311 - 11 302 107253 93 1 2 196 chain 21668 chr1 249250621 + 33322919 33323200 AluSp 311 - 19 300 121508 55 1 2 106 5 4 114 chain 25863 chr1 249250621 + 33330697 33330998 AluSp 311 - 13 310 100593 12 4 0 285 chain 2456 chr1 249250621 + 33387075 33387101 LTR67B 553 - 42 68 233641 26 chain 24326 chr1 249250621 + 33416444 33416726 AluSc 308 - 13 297 108511 62 0 1 114 0 1 106 chain 27280 chr1 249250621 + 33429034 33429344 AluSx1 309 + 0 308 95340 131 2 0 177 chain 5767 chr1 249250621 + 33434992 33435085 L1MB3 1562 - 7 99 187459 27 16 15 50 chain 92606 chr1 249250621 + 33439079 33440168 SVA_E 1901 - 7 1097 38784 788 14 49 4 0 1 27 46 18 4 1 0 76 4 0 110 1 0 5 1 0 8 chain 4067 chr1 249250621 + 33439912 33439958 SVA_E 1901 - 672 718 86509 46 chain 4421 chr1 249250621 + 33440168 33440218 SVA_E 1901 - 927 978 86509 14 1 2 35 chain 24651 chr1 249250621 + 33440236 33440621 SVA_F 1814 - 523 811 106716 17 1 0 16 0 1 44 98 0 42 0 1 167 chain 4183 chr1 249250621 + 33440314 33440389 SVA_F 1814 - 777 852 122251 75 chain 70362 chr1 249250621 + 33440637 33441437 SVA_D 2077 - 1179 2022 48233 172 0 1 61 0 3 16 4 3 9 0 40 538 chain 29844 chr1 249250621 + 33509303 33509775 LTR19A 502 + 0 502 85303 34 5 4 182 5 4 58 0 1 86 2 7 14 50 75 24 0 1 12 chain 135122 chr1 249250621 + 33516944 33519087 SVA_F 1814 + 335 1814 26988 492 273 0 28 1 0 25 0 1 16 1 0 51 0 15 228 405 0 623 chain 14176 chr1 249250621 + 33517520 33517709 SVA_F 1814 + 861 1067 76470 19 0 2 10 1 0 56 3 18 28 0 1 72 chain 2411 chr1 249250621 + 33518059 33518086 SVA_F 1814 + 902 929 201173 27 chain 3913 chr1 249250621 + 33518099 33518179 SVA_F 1814 + 1006 1087 128348 67 0 1 13 chain 24821 chr1 249250621 + 33518179 33518459 SVA_F 1814 + 896 1187 105766 51 0 15 39 1 0 10 1 0 166 2 0 10 chain 75397 chr1 249250621 + 33529116 33530085 LTR5_Hs 974 + 0 974 45826 458 0 4 106 5 4 54 10 9 21 0 1 17 3 5 97 7 7 191 chain 44624 chr1 249250621 + 33530085 33530711 HERVK-int 6823 + 0 621 63452 5 1 0 17 1 0 20 1 0 20 7 6 6 1 0 26 2 1 20 1 0 12 2 0 32 0 5 132 1 0 4 0 1 148 1 0 166 chain 71139 chr1 249250621 + 33531303 33533971 HERVK11-int 2540 + 695 2093 47871 29 4 0 13 5 0 14 113 83 44 3 0 12 1442 261 23 29 25 14 10 0 15 1 0 25 12 1 28 25 8 53 1 4 372 16 11 107 1 0 179 15 14 63 chain 14358 chr1 249250621 + 33534088 33534293 LTR5B 1012 + 821 1012 143348 54 2 0 4 13 0 59 1 2 72 chain 24532 chr1 249250621 + 33552735 33553009 AluSp 311 - 13 287 107365 274 chain 4814 chr1 249250621 + 33575251 33575310 L1MC1 2226 - 970 1029 197181 59 chain 46387 chr1 249250621 + 33590124 33590647 L1PA5 6144 - 1 524 61697 523 chain 29971 chr1 249250621 + 33662009 33662432 Tigger3b 1229 - 684 1107 84909 217 4 0 37 2 1 11 0 2 18 4 6 78 3 4 49 chain 391935 chr1 249250621 + 33672564 33677495 L1PA6 6164 - 10 4663 10395 816 0 2 25 0 3 274 1 14 167 1 6 198 1 0 284 0 8 312 0 3 344 3 0 507 16 14 330 0 2 493 2 1 25 0 2 159 311 0 375 0 3 128 1 0 158 chain 22816 chr1 249250621 + 33688401 33689067 THE1B 368 + 0 368 116504 44 0 15 113 325 2 24 35 45 125 chain 226616 chr1 249250621 + 33755703 33758311 L1PA3long 6157 - 0 2647 17506 6 0 5 101 0 1 11 0 31 1517 7 1 126 0 4 665 2 1 167 0 5 6 chain 134611 chr1 249250621 + 33774368 33775944 SVA_B 1603 - 0 1603 27094 588 1 0 21 0 41 28 50 0 51 0 40 161 1 0 626 12 5 15 0 8 12 3 0 7 chain 58685 chr1 249250621 + 33821903 33822549 SVA_B 1603 - 11 735 53589 578 0 39 25 0 1 29 0 38 14 chain 3255 chr1 249250621 + 33830755 33830793 MIRb 242 + 94 132 219880 38 chain 3285 chr1 249250621 + 33905268 33905337 MamRep38 296 - 133 200 219273 12 20 18 37 chain 208876 chr1 249250621 + 33914268 33917005 L1PB1 5432 + 2273 5014 18575 216 6 0 294 0 1 12 0 7 39 1 0 85 0 2 12 1 0 65 0 1 4 1 0 182 7 0 48 0 1 61 0 14 405 33 16 252 7 9 122 8 23 237 5 6 9 3 1 229 5 0 388 chain 10353 chr1 249250621 + 33917038 33917251 L1PB1 5432 - 106 298 158893 15 18 10 5 2 0 14 2 1 45 1 0 17 1 0 51 2 0 9 6 2 11 1 0 7 1 0 5 chain 21983 chr1 249250621 + 33927706 33927976 AluY 311 + 39 310 120302 151 0 3 61 2 0 56 chain 30105 chr1 249250621 + 33968017 33968392 THE1C 375 + 0 375 84467 375 chain 11115 chr1 249250621 + 33971092 33971234 L1PB3 3668 - 528 670 155756 142 chain 133484 chr1 249250621 + 33974247 33975740 SVA_D 2077 - 0 2019 27325 313 1 2 308 0 1 15 0 446 38 1 38 310 0 41 507 chain 26479 chr1 249250621 + 34009702 34010016 AluYk4 311 - 8 311 98132 171 11 0 132 chain 8406 chr1 249250621 + 34058595 34058787 L1MB3 1562 + 1147 1316 168815 28 28 27 25 37 12 55 0 3 19 chain 24234 chr1 249250621 + 34062051 34062430 THE1C 375 - 0 375 109029 25 1 0 152 22 19 26 20 0 9 16 35 21 0 1 87 chain 3981 chr1 249250621 + 34125418 34125490 MER58A 224 + 7 80 207672 20 15 16 37 chain 549381 chr1 249250621 + 34137597 34143718 L1PA4 6152 + 0 6151 1530 127 0 14 238 0 7 850 0 1 649 0 1 138 0 1 175 0 2 1312 0 1 1958 0 3 674 chain 24599 chr1 249250621 + 34165610 34165906 AluSg7 307 - 8 307 107003 19 0 1 4 0 2 85 1 0 56 0 1 131 chain 17201 chr1 249250621 + 34195083 34195268 L1PA3long 6157 - 0 185 135036 185 chain 20413 chr1 249250621 + 34201857 34202095 AluY 311 + 57 298 125853 75 0 1 133 0 2 30 chain 51030 chr1 249250621 + 34222357 34222918 L1PA3long 6157 + 5596 6157 58289 561 chain 84500 chr1 249250621 + 34261895 34262979 MER11A 1151 + 0 1115 41715 108 0 2 66 8 0 23 2 0 31 1 0 61 0 2 33 0 2 491 20 5 11 8 1 10 0 21 13 0 36 55 0 1 143 chain 9346 chr1 249250621 + 34294997 34295121 L1PA4 6152 - 0 128 163817 13 0 3 10 1 2 100 chain 554425 chr1 249250621 + 34295121 34301263 L1PA3long 6157 + 1 6157 894 2879 0 12 758 0 1 7 1 0 634 0 2 1863 chain 109409 chr1 249250621 + 34301324 34302605 L1P1 4361 - 3079 4360 34342 1281 chain 133975 chr1 249250621 + 34356173 34357646 L1PA3long 6157 + 4672 6143 27214 344 4 0 190 0 1 100 0 1 835 chain 5429 chr1 249250621 + 34358300 34358375 L1PB2 3958 - 123 197 190712 60 2 1 13 chain 7507 chr1 249250621 + 34369959 34370054 L1MB5 1630 + 1214 1309 174122 95 chain 8112 chr1 249250621 + 34389431 34389550 MER1B 344 + 214 339 170428 53 7 14 48 1 0 10 chain 28003 chr1 249250621 + 34481752 34482127 L1PA8 5853 - 0 370 92990 93 1 0 19 2 1 61 4 3 68 5 4 40 1 0 81 chain 18157 chr1 249250621 + 34482127 34482332 L1PA8 5853 + 5272 5477 132442 205 chain 117099 chr1 249250621 + 34528800 34530347 THE1A-int 1579 - 0 1579 32092 173 1 0 25 0 1 95 3 2 106 1 2 60 2 6 88 25 38 100 0 3 5 0 7 288 1 2 405 0 4 26 8 0 47 16 0 10 0 24 62 chain 27180 chr1 249250621 + 34534283 34534618 THE1B 368 + 4 356 95662 36 0 15 109 0 2 190 chain 5146 chr1 249250621 + 34537704 34537762 HERV9-int 5642 + 4084 4142 193589 58 chain 26402 chr1 249250621 + 34542792 34543079 AluYk11 308 + 16 303 98405 287 chain 124281 chr1 249250621 + 34547069 34548688 SVA_B 1603 + 71 1603 29599 219 0 18 364 153 0 111 0 3 91 1 43 14 0 1 12 0 1 94 10 9 117 0 4 425 2 0 6 chain 10272 chr1 249250621 + 34547652 34547766 SVA_B 1603 + 556 670 119096 114 chain 2942 chr1 249250621 + 34547766 34547805 SVA_B 1603 + 673 712 188492 39 chain 93578 chr1 249250621 + 34549939 34550974 L1PA4 6152 + 5098 6134 38484 101 0 1 934 chain 28526 chr1 249250621 + 34552886 34553213 L1PA7 6471 + 6124 6454 91069 211 0 3 116 chain 548183 chr1 249250621 + 34557997 34564014 L1PA3long 6157 + 0 6147 1682 152 0 1 211 0 1 403 8 136 5243 chain 7493 chr1 249250621 + 34578550 34578639 5S 121 + 1 90 174188 89 chain 6190 chr1 249250621 + 34640517 34640674 MER3 215 + 47 209 183651 63 66 70 23 0 1 5 chain 5857 chr1 249250621 + 34641469 34641548 MADE1 96 - 1 96 186612 36 2 18 41 chain 9130 chr1 249250621 + 34692403 34692514 MLT1A 405 + 294 405 164907 111 chain 40541 chr1 249250621 + 34701627 34702208 MER51A 677 + 0 661 68531 179 22 20 17 11 39 48 2 33 58 0 30 160 7 0 77 chain 545807 chr1 249250621 + 34716349 34722366 L1PA3long 6157 + 6 6157 1975 146 0 1 563 0 1 59 0 128 4021 0 1 1081 0 1 142 0 2 5 chain 52142 chr1 249250621 + 34759566 34760154 L1PA5 6144 + 5555 6142 57531 330 1 0 257 chain 21405 chr1 249250621 + 34760281 34760617 L1PA16 3655 + 3248 3587 122491 37 18 16 100 16 24 153 3 0 9 chain 14824 chr1 249250621 + 34861927 34862092 L1PA5 6144 + 5973 6138 141867 165 chain 3020 chr1 249250621 + 34899097 34899129 LTR16C 481 - 32 64 224624 32 chain 6483 chr1 249250621 + 34916671 34916743 MER5A 189 + 0 72 181371 72 chain 4021 chr1 249250621 + 34930221 34930294 LTR16E2 555 + 460 534 207073 32 15 16 26 chain 8415 chr1 249250621 + 34949153 34949246 L1PA4 6152 + 6059 6152 168751 93 chain 218788 chr1 249250621 + 34954419 34957665 L1PA11 4918 + 1637 4567 17957 176 0 1 233 1 0 200 8 12 281 10 0 187 1 2 16 14 13 205 1 0 139 1 7 11 3 4 22 5 10 214 3 0 5 5 8 283 1 0 35 7 16 206 316 0 6 0 1 5 7 0 18 1 9 51 0 1 320 0 1 43 0 3 11 3 2 13 2 0 67 2 0 14 1 0 20 4 0 9 4 1 15 12 6 15 1 0 13 chain 26352 chr1 249250621 + 34973114 34973416 AluYa5 310 + 0 299 98608 97 3 1 34 6 5 162 chain 22729 chr1 249250621 + 34978792 34979053 L1PA4 6152 - 9 270 116929 261 chain 15771 chr1 249250621 + 34980235 34980498 L1PREC2 3366 + 2613 2867 139053 104 3 0 35 2 0 30 11 12 12 4 3 41 7 3 14 chain 26853 chr1 249250621 + 34982841 34983196 L1PA8A 6298 + 5923 6272 96799 84 0 1 170 16 10 74 2 1 9 chain 14959 chr1 249250621 + 34997004 34997207 MER30 238 - 0 238 141446 62 0 1 47 3 19 76 0 18 15 chain 192606 chr1 249250621 + 35017317 35020857 L1PREC2 3366 + 139 3215 19805 31 1 0 9 3 1 20 7 2 7 1 0 24 1 0 8 5 0 7 1 0 9 2 0 31 2 1 103 0 1 12 6 5 60 2 1 181 0 4 190 5 6 12 358 55 275 0 1 108 10 16 19 0 2 47 11 12 45 17 16 115 9 6 41 0 3 59 0 1 91 44 16 333 12 7 28 4 7 252 0 2 296 1 0 19 0 1 11 7 4 54 4 3 23 0 6 12 1 0 3 3 0 14 52 39 15 3 1 29 4 1 11 26 12 31 18 13 32 3 1 11 220 133 19 chain 142609 chr1 249250621 + 35021284 35022970 L1PA8 5853 + 4174 5853 25712 836 2 0 375 0 2 177 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 2 1 92 chain 16786 chr1 249250621 + 35023974 35024322 L1PA15 4387 - 31 362 136143 27 5 0 14 3 1 44 13 10 43 2 1 9 4 0 22 44 44 11 1 0 26 6 5 74 chain 566343 chr1 249250621 + 35031675 35037706 L1HS 6032 - 2 6032 127 2898 1 0 3132 chain 43263 chr1 249250621 + 35044431 35045058 MER41B 635 - 0 634 65098 68 13 18 40 0 1 5 0 1 20 24 23 313 20 21 124 chain 20557 chr1 249250621 + 35062143 35062433 THE1A 353 + 65 353 125449 46 1 0 91 2 0 6 29 30 115 chain 23030 chr1 249250621 + 35063061 35063322 AluYf4 310 + 36 296 115492 175 1 0 85 chain 31468 chr1 249250621 + 35097566 35097989 LTR7B 505 - 8 505 81696 55 2 1 52 0 1 26 1 0 43 0 1 38 0 2 26 6 68 69 0 10 105 chain 254511 chr1 249250621 + 35099249 35102315 HERVH-int 3825 - 0 3422 16008 225 0 2 149 1 4 6 3 0 101 8 218 39 9 11 1354 8 35 211 1 0 444 0 3 187 0 3 51 0 3 13 0 2 7 0 1 45 0 20 35 1 0 25 11 96 132 chain 4706 chr1 249250621 + 35137618 35137921 MER52D 1964 + 1113 1234 198456 24 111 23 28 85 0 19 22 13 14 chain 12859 chr1 249250621 + 35144368 35144636 MST-int 1221 - 850 1098 148807 65 1 0 68 85 68 15 2 0 32 chain 15658 chr1 249250621 + 35146195 35146473 MSTA 426 - 131 417 139402 46 2 1 12 2 0 65 14 0 10 6 27 5 1 0 13 12 17 90 chain 20389 chr1 249250621 + 35173404 35173668 Tigger3d 321 - 22 284 125934 105 2 0 6 1 2 54 1 0 95 chain 30984 chr1 249250621 + 35182960 35183374 L1PA8 5853 - 0 405 82542 80 8 5 8 1 0 16 1 0 43 0 1 7 1 0 14 5 4 67 2 0 46 1 0 114 chain 21215 chr1 249250621 + 35198378 35198702 THE1B 368 - 20 368 123158 105 39 49 18 5 4 117 0 15 40 chain 3897 chr1 249250621 + 35211875 35211918 MIRb 242 + 69 112 208892 43 chain 34445 chr1 249250621 + 35238817 35239266 L1PA8 5853 + 5409 5853 77001 157 1 0 21 0 2 20 2 0 69 2 1 10 2 1 50 2 1 19 1 0 93 chain 6994 chr1 249250621 + 35255936 35256025 L1MB2 1706 + 1598 1686 177502 13 1 0 75 chain 11053 chr1 249250621 + 35275003 35275230 MLT1A1-int 1737 - 1490 1708 156002 35 0 4 36 0 2 18 77 62 61 chain 25342 chr1 249250621 + 35280366 35280657 AluY 311 + 11 303 103003 121 0 1 170 chain 23619 chr1 249250621 + 35326199 35326474 AluSp 311 - 36 311 112476 275 chain 25611 chr1 249250621 + 35344393 35344694 AluY 311 + 4 306 101669 129 1 0 129 0 2 42 chain 22847 chr1 249250621 + 35344707 35345075 MER1A 529 - 66 466 116358 7 7 0 53 3 0 126 9 15 38 10 6 83 17 57 15 chain 29676 chr1 249250621 + 35358491 35358803 AluYb8 318 + 0 312 85914 312 chain 4097 chr1 249250621 + 35409145 35409194 U5 65 - 16 65 205985 49 chain 99892 chr1 249250621 + 35413213 35414369 SVA_B 1603 + 206 1603 36811 393 0 117 33 0 3 112 1 0 27 0 123 133 1 0 456 chain 241054 chr1 249250621 + 35420762 35423410 L1PA3long 6157 + 3500 6152 16717 854 0 4 155 0 1 280 1 0 1358 chain 32801 chr1 249250621 + 35423469 35423835 L1PA5 6144 + 5774 6141 79525 220 0 1 146 chain 107430 chr1 249250621 + 35432701 35433933 SVA_D 2077 - 21 1749 34856 184 0 1 358 0 225 100 0 1 22 0 269 39 15 15 514 chain 30122 chr1 249250621 + 35445651 35445968 AluYb8 318 - 1 318 84419 317 chain 3002 chr1 249250621 + 35495013 35495045 MIR 256 + 116 148 224984 32 chain 35751 chr1 249250621 + 35507825 35508372 L1MA2 4263 + 3595 4111 75199 47 6 9 11 20 0 139 3 0 155 11 9 93 19 11 36 1 0 6 chain 24275 chr1 249250621 + 35511126 35511421 AluSp 311 - 1 296 108807 295 chain 6630 chr1 249250621 + 35519654 35519729 LTR10F 562 + 0 75 180239 75 chain 325398 chr1 249250621 + 35519754 35523438 L1PA5 6144 - 15 3717 12373 141 2 0 5 1 3 263 0 2 417 1 5 280 0 1 731 0 2 1061 0 1 722 0 8 60 chain 37280 chr1 249250621 + 35523438 35524008 L1P1 4361 - 1149 4357 72845 243 0 2613 109 18 18 42 47 72 111 chain 26381 chr1 249250621 + 35524019 35524430 LTR10F 562 + 61 554 98492 44 0 56 11 0 59 22 54 0 13 10 16 188 0 15 69 chain 12250 chr1 249250621 + 35524433 35524590 MER50 708 + 539 695 151206 63 1 0 93 chain 24094 chr1 249250621 + 35530283 35530575 AluYc3 301 - 4 301 109775 31 5 9 142 1 2 113 chain 4627 chr1 249250621 + 35532472 35532555 L1MD 993 + 507 591 199328 33 1 0 4 11 13 34 chain 79599 chr1 249250621 + 35592820 35594565 MER4-int 2692 - 126 1264 43778 54 1 2 16 0 1 6 2 6 165 310 0 31 32 31 24 1 2 215 2 1 132 0 1 96 5 4 16 2 1 117 301 0 137 7 2 38 11 16 24 chain 37783 chr1 249250621 + 35595697 35596166 MER4A1 472 - 1 472 72437 455 0 2 14 chain 37266 chr1 249250621 + 35596570 35597028 LTR2 463 - 0 463 73145 88 15 16 179 0 4 176 chain 323584 chr1 249250621 + 35597028 35613163 Harlequin-int 5206 - 0 5072 12460 219 2 1 17 7 5 304 6065 927 57 6 0 564 7 21 271 0 1 111 7 0 121 0 6 319 1 2 365 0 1 183 0 5 413 2 1 118 13 0 167 1 0 55 321 0 65 4 18 214 5611 0 171 3 0 5 4 7 102 5 1 235 chain 307075 chr1 249250621 + 35599399 35603212 HERVH-int 3825 - 0 3825 13128 149 12 1 1373 0 1 186 0 1 398 4 31 215 1 0 37 11 1 426 0 1 226 1 0 49 24 24 12 1 0 17 43 1 20 1 0 20 8 5 13 7 6 7 0 50 22 1 0 36 0 3 9 10 12 140 1 0 333 chain 18076 chr1 249250621 + 35615727 35615940 LTR2 463 - 246 463 132655 83 0 4 130 chain 13618 chr1 249250621 + 35618962 35619150 MER34D 576 + 388 576 145908 143 1 0 11 7 8 26 chain 10515 chr1 249250621 + 35625144 35625271 AluJb 308 + 162 291 158180 112 0 2 15 chain 14279 chr1 249250621 + 35630700 35632750 L1MA7 2200 + 1356 1975 143620 39 0 1 70 1833 401 108 chain 6984 chr1 249250621 + 35661569 35661650 HY3 101 + 0 81 177583 81 chain 15168 chr1 249250621 + 35697049 35697768 L1MB2 1706 - 17 302 140862 72 1 0 6 1 0 13 1 0 19 495 64 111 chain 2745 chr1 249250621 + 35698819 35698856 Charlie1a 1436 + 270 306 229557 24 1 0 12 chain 6838 chr1 249250621 + 35720403 35720482 LTR47A 437 - 9 88 178668 79 chain 27954 chr1 249250621 + 35724438 35724736 AluYd8 298 - 0 297 93151 192 1 0 105 chain 29268 chr1 249250621 + 35749561 35749876 AluYb8 318 - 3 318 87701 315 chain 22730 chr1 249250621 + 35759479 35759749 AluSc8 310 + 9 298 116925 36 0 16 71 0 3 163 chain 4580 chr1 249250621 + 35777667 35777949 L1MDa 1598 - 511 804 199870 21 0 1 4 1 0 4 170 183 32 24 22 26 chain 9323 chr1 249250621 + 35801573 35801889 L1MB2 1706 - 16 313 163933 77 58 44 12 14 17 17 20 64 8 0 3 15 19 0 6 36 0 34 chain 10807 chr1 249250621 + 35802356 35802675 THE1C 375 + 0 315 156957 15 2 0 32 0 9 8 93 74 34 56 64 79 chain 28953 chr1 249250621 + 35855872 35856265 LTR7 482 - 7 482 89207 91 0 2 15 1 2 41 0 10 53 0 31 115 8 46 69 chain 5222 chr1 249250621 + 35884917 35884983 MADE1 96 + 0 72 192809 44 0 6 22 chain 6491 chr1 249250621 + 35893419 35893493 HY5 76 - 1 75 181321 74 chain 28786 chr1 249250621 + 35895546 35895848 AluYg6 310 - 8 310 89962 302 chain 5314 chr1 249250621 + 35924198 35924275 MIR 256 + 74 148 191878 69 3 0 5 chain 120826 chr1 249250621 + 35929704 35931278 THE1B-int 1605 + 0 1605 30751 281 0 2 53 0 2 94 12 37 177 0 6 7 13 4 106 1 0 7 0 1 238 1 2 9 0 2 363 0 1 43 0 1 169 chain 28345 chr1 249250621 + 35931278 35931652 THE1B 368 + 0 368 91780 82 14 0 61 0 9 20 2 1 195 chain 52416 chr1 249250621 + 35942599 35943954 L1MA2 4263 + 3333 4218 57341 25 7 3 201 5 4 7 0 1 10 5 1 76 5 4 40 316 0 30 3 1 5 0 2 47 1 0 6 8 5 157 4 5 84 2 0 7 12 7 44 1 0 9 206 74 16 4 2 12 chain 18364 chr1 249250621 + 35950408 35950601 L1HS 6032 - 3 196 131897 193 chain 9431 chr1 249250621 + 35970121 35970311 Tigger2a 444 + 253 444 163406 99 60 61 31 chain 225042 chr1 249250621 + 35979988 35983415 L1PA14 3548 + 439 3485 17594 14 1 0 40 0 1 25 31 19 54 8 1 101 1 0 6 0 1 353 319 8 82 10 1 218 0 6 89 1 2 55 0 4 29 1 0 90 0 1 225 0 1 449 4 0 221 2 1 51 1 0 102 1 0 20 15 12 193 2 0 22 9 6 11 2 0 39 10 8 5 2 0 99 33 27 6 1 0 84 1 0 90 6 0 21 19 12 35 4 2 12 1 0 3 1 0 19 1 0 40 6 0 10 1 0 20 chain 24395 chr1 249250621 + 36047168 36047462 AluSp 311 - 7 301 108102 294 chain 18396 chr1 249250621 + 36106528 36106783 AluSp 311 + 19 274 131801 88 6 5 16 1 0 26 6 8 112 chain 24287 chr1 249250621 + 36165500 36165788 AluYc3 301 + 1 290 108727 112 1 2 175 chain 21109 chr1 249250621 + 36178065 36178313 AluYc 301 + 28 278 123527 92 0 2 156 chain 25836 chr1 249250621 + 36252951 36253264 AluY 311 + 0 298 100721 118 4 0 8 11 0 172 chain 4275 chr1 249250621 + 36255419 36255487 MLT1C 463 - 5 74 203542 12 6 7 50 chain 33184 chr1 249250621 + 36263770 36264212 L1PA8 5853 - 3 438 78929 90 1 0 19 2 1 48 16 14 70 3 1 45 1 0 147 chain 20167 chr1 249250621 + 36272236 36272563 MLT1B 390 + 38 366 126624 13 7 0 6 1 9 163 16 15 33 15 16 73 chain 19344 chr1 249250621 + 36279918 36280159 L1PA5 6144 - 3 251 129094 19 17 24 205 chain 11418 chr1 249250621 + 36312403 36313273 MER2 342 - 0 206 154607 98 700 33 50 0 3 22 chain 9567 chr1 249250621 + 36312680 36312818 MER30 238 - 0 160 162749 79 1 7 25 8 24 25 chain 3689 chr1 249250621 + 36325796 36325836 tRNA-Thr-ACG_ 70 - 30 70 212119 40 chain 38041 chr1 249250621 + 36341346 36341846 Tigger1 2417 + 1281 1800 72076 174 0 2 19 10 27 297 chain 3568 chr1 249250621 + 36418490 36418557 L1MB7 1623 - 130 189 214150 13 1 0 28 4 1 4 4 0 13 chain 4004 chr1 249250621 + 36454412 36454462 L1MA9 1812 - 196 245 207324 37 1 0 12 chain 2738 chr1 249250621 + 36486852 36486881 MADE1 96 + 67 96 229635 29 chain 53872 chr1 249250621 + 36493851 36494451 L1PA3long 6157 - 1 603 56445 147 0 2 453 chain 5383 chr1 249250621 + 36500154 36500227 MER51A 677 - 70 138 191165 14 5 0 54 chain 8768 chr1 249250621 + 36514676 36514801 L1PA16 3655 + 3465 3588 166828 92 1 2 18 3 0 11 chain 14245 chr1 249250621 + 36527760 36527934 AluSz6 309 - 6 178 143743 167 2 0 5 chain 21093 chr1 249250621 + 36530497 36530780 AluSg 306 + 14 293 123572 29 9 5 93 1 4 5 3 0 143 chain 5824 chr1 249250621 + 36567803 36567919 L1MB8 1703 + 1452 1580 186904 29 33 45 54 chain 5994 chr1 249250621 + 36612570 36612643 MER51E 476 + 304 377 185301 73 chain 25653 chr1 249250621 + 36634868 36635177 AluY 311 + 0 303 101476 11 7 0 121 0 1 170 chain 24370 chr1 249250621 + 36654692 36654983 AluSp 311 + 6 297 108257 85 0 3 38 3 0 165 chain 7048 chr1 249250621 + 36656976 36657070 MER2 342 - 96 192 177121 39 3 5 52 chain 77755 chr1 249250621 + 36662383 36663469 LTR12C 1709 + 0 1708 44631 143 133 436 41 5 6 82 0 319 85 1 0 4 4 2 106 0 4 25 1 0 374 1 0 81 chain 11180 chr1 249250621 + 36662527 36662656 LTR12C 1709 - 1133 1262 155515 129 chain 7324 chr1 249250621 + 36670938 36671070 MER63B 433 - 0 131 175278 24 31 30 77 chain 23489 chr1 249250621 + 36672072 36672418 MER51B 395 + 0 395 113179 40 13 0 70 1 58 78 12 13 75 0 4 43 0 1 4 1 0 9 chain 25321 chr1 249250621 + 36680539 36680847 AluY 311 + 0 311 103115 4 1 0 122 2 0 150 0 6 29 chain 21277 chr1 249250621 + 36685334 36685600 Tigger1 2417 + 966 1232 122938 266 chain 74294 chr1 249250621 + 36708799 36709676 SVA_D 2077 - 0 908 46363 608 0 1 61 15 14 4 0 1 75 0 1 4 0 1 8 10 37 4 0 1 88 chain 11763 chr1 249250621 + 36731278 36731444 L1PA8 5853 - 6 165 153203 87 1 0 19 2 1 19 5 0 33 chain 24960 chr1 249250621 + 36736172 36736480 AluSp 311 - 6 311 105004 280 3 0 25 chain 4373 chr1 249250621 + 36797506 36797565 HERVFH21-int 991 + 490 547 202289 42 1 0 3 1 0 12 chain 24551 chr1 249250621 + 36804379 36804674 AluSg7 307 - 12 307 107248 44 1 0 119 0 1 131 chain 25245 chr1 249250621 + 36907070 36907373 AluY 311 + 3 304 103500 120 7 4 46 0 1 130 chain 3384 chr1 249250621 + 36941850 36941958 MIR 256 + 34 143 217381 15 56 57 37 chain 3942 chr1 249250621 + 36944487 36944553 MER58C 217 + 137 216 208241 35 9 22 22 chain 75154 chr1 249250621 + 36954584 36955535 LTR5_Hs 974 - 0 974 45947 41 11 23 55 10 16 56 7 7 116 0 1 197 0 4 458 chain 63566 chr1 249250621 + 36955979 36956728 HERVK-int 6823 - 1010 1753 51210 65 1 0 23 1 0 89 5 0 108 1 0 13 1 0 230 0 3 212 chain 3798 chr1 249250621 + 36970834 36970893 MER2B 336 + 276 336 210419 12 6 7 41 chain 6816 chr1 249250621 + 36975423 36975503 THE1B 368 - 278 358 178830 80 chain 3878 chr1 249250621 + 37032208 37032254 LTR16C 481 + 419 465 209188 46 chain 29110 chr1 249250621 + 37097862 37098172 AluYb8 318 + 0 310 88505 310 chain 8224 chr1 249250621 + 37114214 37114401 L1PB1 5432 + 5236 5404 169816 45 1 0 13 2 0 8 29 19 6 2 0 4 1 0 15 4 3 21 1 0 21 1 0 13 chain 7302 chr1 249250621 + 37124484 37124815 LTR33 499 + 147 499 175428 20 1 0 4 211 233 30 0 1 9 1 0 55 chain 14499 chr1 249250621 + 37147256 37147529 L1PB1 5432 - 10 259 142892 18 1 0 13 1 0 21 1 0 24 2 0 14 11 8 12 19 10 6 4 0 15 1 0 43 2 1 16 2 1 47 chain 17565 chr1 249250621 + 37147532 37147747 AluSc8 310 + 83 302 134084 32 0 1 16 0 3 167 chain 83632 chr1 249250621 + 37149120 37150066 L1PA4 6152 - 6 955 42059 143 1 0 451 0 1 69 0 4 123 1 0 158 chain 18744 chr1 249250621 + 37211481 37211787 L1PB2 3958 + 3529 3838 130839 24 14 9 20 0 1 35 13 24 37 1 0 76 2 0 19 2 1 63 chain 66372 chr1 249250621 + 37224326 37225066 L1PA4 6152 + 5407 6152 49920 734 0 5 6 chain 14499 chr1 249250621 + 37229040 37229254 L1PA11 4918 + 4297 4504 142893 31 2 0 67 1 0 12 2 1 67 2 0 12 2 1 16 chain 41057 chr1 249250621 + 37232828 37233273 L1PA3long 6157 - 0 445 67826 445 chain 3638 chr1 249250621 + 37240468 37240569 MIRb 242 + 20 123 213000 23 45 47 33 chain 26212 chr1 249250621 + 37271263 37271566 AluSp 311 + 8 311 99159 303 chain 10648 chr1 249250621 + 37307883 37308033 MER5A 189 + 14 165 157613 81 1 0 20 3 5 45 chain 3720 chr1 249250621 + 37332274 37332319 MIR 256 - 128 174 211638 6 0 1 39 chain 20605 chr1 249250621 + 37383047 37383382 THE1B 368 + 0 368 125276 40 0 15 102 0 9 4 1 0 4 1 0 24 36 46 16 8 9 99 chain 3521 chr1 249250621 + 37467348 37467392 LTR16C 481 - 55 99 215049 44 chain 29223 chr1 249250621 + 37476328 37476641 AluYb8 318 - 5 318 87941 313 chain 24267 chr1 249250621 + 37513947 37514217 AluY 311 + 21 292 108861 260 0 1 10 chain 15211 chr1 249250621 + 37525330 37525551 L1PA8 5853 - 0 227 140744 21 0 11 61 1 0 19 2 1 52 2 0 9 2 1 52 chain 184407 chr1 249250621 + 37545338 37547742 SVA_D 2077 + 0 2077 20549 8 10 0 18 0 3 739 40 0 152 1 0 24 146 13 78 0 1 28 117 0 320 1 0 4 24 0 13 4 0 44 1 0 632 chain 1574 chr1 249250621 + 37546330 37546354 SVA_D 2077 + 982 1006 57835 24 chain 6876 chr1 249250621 + 37546354 37546468 SVA_D 2077 + 1106 1220 81577 114 chain 7673 chr1 249250621 + 37546582 37546699 SVA_D 2077 + 1113 1191 57835 71 39 0 7 chain 2135 chr1 249250621 + 37546660 37546692 SVA_D 2077 + 1367 1446 236546 7 0 47 25 chain 3231 chr1 249250621 + 37560760 37560797 MIRb 242 - 57 94 220391 37 chain 2874 chr1 249250621 + 37624939 37624969 MLT1N2 510 - 369 399 227471 30 chain 17976 chr1 249250621 + 37625444 37625782 THE1D 372 + 0 332 132922 47 9 0 27 3 0 6 20 24 13 15 15 6 0 1 41 18 20 25 1 0 107 chain 57821 chr1 249250621 + 37632477 37633235 L1PA8 5853 - 0 760 54076 93 1 0 19 2 1 39 5 4 9 1 0 9 2 1 70 2 0 44 1 0 17 2 3 80 0 10 72 1 0 289 chain 81953 chr1 249250621 + 37650770 37651695 L1PA4 6152 + 5209 6140 42783 4 0 1 87 1 5 715 0 1 118 chain 11358 chr1 249250621 + 37662344 37662525 MER30 238 + 70 238 154870 37 4 24 62 33 0 45 chain 17138 chr1 249250621 + 37666544 37666884 L1PB1 5432 + 5114 5424 135213 26 1 0 7 16 11 9 2 0 53 2 1 16 1 0 38 0 1 4 1 0 16 1 0 4 2 0 11 8 0 16 8 5 14 2 0 24 1 0 21 1 0 11 1 0 18 1 0 4 chain 506949 chr1 249250621 + 37673542 37679592 L1PA3long 6157 + 2 6157 6401 92 0 526 629 3 0 1070 0 1 1568 0 9 1410 1 0 668 434 0 17 0 7 158 chain 28553 chr1 249250621 + 37678990 37679417 LTR7 482 - 0 482 90942 98 0 2 76 0 1 9 0 31 42 64 85 138 chain 25514 chr1 249250621 + 37684302 37684583 L1PA5 6144 - 7 289 102164 140 0 1 141 chain 3261 chr1 249250621 + 37689012 37689049 L1MB2 1706 + 1635 1672 219770 37 chain 23847 chr1 249250621 + 37694861 37695217 THE1A 353 - 0 353 111200 60 5 0 114 0 1 44 24 25 15 5 4 42 0 1 47 chain 23399 chr1 249250621 + 37734701 37735210 L1PB1 5432 + 4978 5427 113652 36 24 0 66 1 4 19 1 0 10 1 0 25 10 8 11 6 2 8 2 0 53 2 1 10 6 5 41 4 3 16 3 0 6 17 6 19 27 22 21 1 0 21 1 0 13 5 2 16 2 0 5 chain 31910 chr1 249250621 + 37800615 37800986 L1PA8A 6298 + 5918 6289 80994 4 1 0 261 0 1 105 chain 47010 chr1 249250621 + 37804879 37805412 L1PA5 6144 - 12 545 61197 533 chain 29236 chr1 249250621 + 37830644 37831019 MLT2A1 477 + 9 395 87877 50 0 2 81 0 1 25 1 5 208 0 4 10 chain 469411 chr1 249250621 + 37831128 37836794 HERVL-int 5654 + 0 5654 8056 478 3 6 634 5 0 59 0 1 218 0 1 382 1 0 568 0 1 556 0 2 387 0 4 58 0 3 1728 0 1 123 2 0 14 32 5 130 0 4 37 14 16 201 6 7 30 chain 31115 chr1 249250621 + 37836801 37837241 MLT2A1 477 + 7 477 82315 108 1 0 4 0 1 22 0 1 25 1 5 30 0 18 164 20 0 10 2 30 33 1 0 19 chain 532640 chr1 249250621 + 37840630 37846800 L1PA6 6164 - 3 6164 3894 227 0 1 610 5 1 5 0 2 788 0 1 468 0 1 554 0 1 279 1 0 33 0 1 4 1 2 445 0 1 60 0 5 347 20 1 874 1 3 403 1 0 1044 chain 6296 chr1 249250621 + 37871299 37871372 L1PA3long 6157 + 5854 5930 182842 13 0 3 60 chain 20089 chr1 249250621 + 37871372 37871598 L1PA3long 6157 + 5931 6156 126863 221 1 0 4 chain 30321 chr1 249250621 + 37882851 37883511 Tigger3b 1229 + 205 827 83863 20 1 0 15 12 18 37 15 14 29 10 2 43 0 3 185 19 15 13 50 1 19 35 38 25 1 3 12 40 52 16 1 0 62 chain 13098 chr1 249250621 + 37911849 37912023 THE1D 372 + 199 372 147856 18 0 1 4 1 0 118 1 0 32 chain 12100 chr1 249250621 + 37924390 37924609 MER30 238 - 0 238 151796 36 13 11 55 29 34 66 6 22 14 chain 14665 chr1 249250621 + 37935864 37936153 AluJr4 308 + 10 293 142371 33 24 25 35 10 9 16 32 33 124 7 0 8 chain 2686 chr1 249250621 + 37983603 37983669 MSTB-int 1649 - 1528 1597 230378 6 0 3 12 10 0 10 5 15 23 chain 116060 chr1 249250621 + 37983669 37985160 LTR12C 1709 + 0 1709 32432 309 0 1 4 1 0 478 1 319 6 2 0 107 0 4 312 102 0 169 chain 3084 chr1 249250621 + 37994541 37994577 MER41B 635 - 118 154 223260 36 chain 24599 chr1 249250621 + 37994999 37995286 AluSp 311 - 19 306 107001 287 chain 24278 chr1 249250621 + 38013480 38013776 AluY 311 + 15 305 108785 103 5 0 89 1 0 98 chain 8015 chr1 249250621 + 38013785 38013905 MER2 342 - 63 203 170960 25 10 30 85 chain 13792 chr1 249250621 + 38015416 38015615 L1MD1 2063 + 1061 1262 145296 69 15 17 115 chain 81584 chr1 249250621 + 38025275 38026265 LTR5B 1012 - 0 1012 42933 8 0 2 73 0 2 362 0 5 72 1 0 351 0 14 123 chain 16354 chr1 249250621 + 38035361 38035655 THE1B 368 + 0 306 137324 21 0 6 97 11 14 4 1 0 27 1 0 17 21 28 10 21 19 63 chain 6683 chr1 249250621 + 38046521 38046595 MER72 723 + 621 695 179807 74 chain 34717 chr1 249250621 + 38204111 38204830 L1PA6 6164 + 5435 6162 76601 34 247 254 67 6 8 34 1 0 330 chain 6420 chr1 249250621 + 38209804 38209903 L1MB7 1623 + 809 905 181857 59 7 4 33 chain 96015 chr1 249250621 + 38236990 38238068 L1PA4 6152 + 5069 6143 37819 896 5 1 177 chain 10692 chr1 249250621 + 38283810 38283970 MSTC 436 + 18 219 157440 56 1 0 4 2 3 17 0 17 33 1 25 46 chain 7615 chr1 249250621 + 38289869 38290016 MER58A 224 + 45 195 173447 33 39 42 75 chain 23647 chr1 249250621 + 38328913 38329189 AluSc 308 + 8 283 112321 51 1 0 224 chain 24551 chr1 249250621 + 38342253 38342561 AluY 311 + 4 292 107240 128 16 0 25 4 0 135 chain 6973 chr1 249250621 + 38350694 38350779 U6 107 + 0 85 177666 85 chain 170743 chr1 249250621 + 38361150 38363408 SVA_D 2077 + 24 2065 21964 14 24 0 687 0 3 33 3 0 130 19 110 9 0 1 25 0 2 266 257 0 80 1 0 4 24 0 13 4 0 44 1 0 620 chain 2419 chr1 249250621 + 38362360 38362391 SVA_D 2077 + 1402 1433 107516 31 chain 6765 chr1 249250621 + 38362483 38362617 SVA_D 2077 + 1120 1177 124267 26 77 0 31 chain 4016 chr1 249250621 + 38362509 38362553 SVA_D 2077 + 1498 1542 171381 44 chain 23537 chr1 249250621 + 38364582 38364866 AluSp 311 + 11 299 112919 264 1 5 19 chain 8657 chr1 249250621 + 38364988 38365086 AluSp 311 + 35 133 167438 98 chain 12460 chr1 249250621 + 38365086 38365238 AluSp 311 + 134 286 150416 152 chain 27453 chr1 249250621 + 38368738 38369116 MER41A 554 + 0 381 94808 87 5 6 32 1 0 77 0 1 24 1 2 140 1 2 10 chain 143898 chr1 249250621 + 38370563 38373143 MER41-int 2638 + 678 2636 25497 46 3 5 75 0 1 4 1 15 85 323 0 223 0 1 80 0 1 17 6 8 84 0 1 148 0 1 79 0 1 5 6 5 106 1 0 27 4 6 222 1 0 104 3 0 6 1 0 20 327 6 95 0 1 313 3 4 78 1 2 83 chain 25342 chr1 249250621 + 38373486 38373858 LTR7B 505 + 0 490 103004 105 0 10 56 13 81 37 2 1 21 0 41 55 0 1 4 1 0 29 14 13 20 0 1 15 chain 46724 chr1 249250621 + 38376566 38377206 HERVH-int 3825 + 3186 3825 61437 57 33 32 135 39 39 376 chain 25194 chr1 249250621 + 38379460 38379830 LTR7B 505 + 0 490 103770 35 0 2 68 0 10 56 11 76 10 0 2 52 0 41 89 17 16 17 0 1 15 chain 3079 chr1 249250621 + 38379845 38379880 MER41A 554 + 332 367 223357 35 chain 11398 chr1 249250621 + 38379896 38380069 MER41A 554 + 380 554 154709 50 0 1 27 0 5 7 19 14 70 chain 26089 chr1 249250621 + 38382083 38382376 AluSp 311 - 7 300 99668 293 chain 20270 chr1 249250621 + 38425400 38425650 AluSx1 309 + 53 303 126316 250 chain 25475 chr1 249250621 + 38427471 38427785 AluSp 311 + 0 311 102334 59 4 0 162 0 1 89 chain 306003 chr1 249250621 + 38435994 38439915 L1PA5 6144 + 2443 6144 13171 134 0 2 335 0 1 234 1 3 12 3 0 6 2 0 54 1 0 27 0 5 253 1 0 46 3 4 111 1 0 5 1 0 20 0 1 75 0 1 529 0 1 303 16 0 389 324 0 122 1 0 155 1 0 4 10 129 735 2 0 5 chain 5005 chr1 249250621 + 38457144 38457199 U6 107 + 11 66 195079 55 chain 14872 chr1 249250621 + 38457229 38457416 MER57B1 401 - 199 387 141711 80 0 1 107 chain 3298 chr1 249250621 + 38488923 38488959 MER105 203 + 0 36 219022 36 chain 28551 chr1 249250621 + 38490066 38490378 AluYb8 318 - 11 318 90955 175 3 0 14 2 0 118 chain 4990 chr1 249250621 + 38514958 38515019 L1PA8 5853 - 0 61 195243 61 chain 4700 chr1 249250621 + 38535539 38535613 MIR 256 - 123 199 198530 37 9 11 28 chain 8383 chr1 249250621 + 38571683 38571787 MER63A 208 + 51 155 168949 104 chain 30175 chr1 249250621 + 38610066 38610446 MLT2A1 477 + 0 383 84252 138 0 1 25 6 10 164 2 0 45 chain 475869 chr1 249250621 + 38610521 38616161 HERVL-int 5654 + 0 5654 7861 185 0 1 759 2 8 377 5 4 411 8 7 670 0 5 119 0 2 146 2 1 519 0 1 618 18 16 887 0 5 18 6 0 250 5 6 71 0 1 140 2 0 286 0 5 136 chain 31717 chr1 249250621 + 38616161 38616594 MLT2A1 477 + 0 477 81304 28 0 5 104 0 1 27 7 11 109 2 6 94 3 29 53 0 4 6 chain 97037 chr1 249250621 + 38665262 38666515 HSMAR2 1300 + 37 1295 37553 242 0 1 58 0 1 429 0 1 22 1 0 182 0 1 4 1 0 97 1 0 126 20 20 10 0 4 60 chain 20996 chr1 249250621 + 38689536 38689883 THE1B 368 + 0 368 123932 44 0 15 45 2 0 65 2 0 5 2 3 21 35 45 63 14 13 49 chain 27275 chr1 249250621 + 38703151 38703514 THE1C 375 + 0 360 95354 125 13 10 37 0 1 177 1 0 10 chain 2961 chr1 249250621 + 38738144 38738176 LTR16A2 485 - 162 194 225877 32 chain 26020 chr1 249250621 + 38739919 38740276 THE1B 368 - 0 368 99945 66 0 2 6 1 0 57 1 0 4 3 0 52 10 9 113 0 15 44 chain 99934 chr1 249250621 + 38777423 38778872 L1PA16 3655 + 2227 3619 36802 6 1 0 208 44 9 148 6 0 6 0 1 37 3 0 4 0 1 27 1 0 208 3 7 14 5 4 15 1 0 133 0 1 38 8 10 186 2 0 90 0 2 6 3 1 45 0 1 142 3 0 9 19 10 6 5 0 17 chain 28608 chr1 249250621 + 38794757 38795063 AluYb8 318 + 0 306 90703 306 chain 16414 chr1 249250621 + 38821798 38822014 THE1B 368 + 153 368 137171 19 3 2 194 chain 15607 chr1 249250621 + 38844536 38844800 MER44A 345 + 68 345 139560 33 7 0 8 5 24 54 0 1 80 11 10 15 0 1 20 4 5 19 1 0 7 chain 26330 chr1 249250621 + 38852606 38852960 THE1B 368 - 0 355 98697 16 2 0 61 3 0 91 0 2 24 3 2 127 0 5 27 chain 4104 chr1 249250621 + 38855075 38855121 MSTB-int 1649 - 9 55 205891 46 chain 3253 chr1 249250621 + 38858782 38858818 MER94 134 + 62 98 219946 36 chain 369787 chr1 249250621 + 38869658 38874996 L1PB1 5432 + 91 5415 11102 64 10 27 58 81 96 284 108 14 417 1 2 334 11 16 83 0 1 226 0 2 176 10 14 331 0 3 38 7 8 84 3 5 118 7 0 6 1 13 13 5 6 112 3 0 5 0 3 20 0 3 63 8 48 50 0 1 130 0 1 324 4 5 258 0 1 179 8 11 218 14 15 13 7 8 447 1 2 181 1 3 82 0 1 98 2 1 290 1 2 9 3 0 24 1 0 4 4 3 13 5 1 9 3 1 48 4 5 13 2 1 45 1 0 12 73 55 22 1 0 22 1 0 7 6 5 11 chain 18522 chr1 249250621 + 38875440 38875791 THE1B 368 + 0 356 131442 15 2 0 28 5 6 56 17 18 44 71 76 113 chain 38895 chr1 249250621 + 38889764 38890216 L1PA6 6164 - 2 455 70873 144 0 1 308 chain 29785 chr1 249250621 + 38890785 38891196 LTR7 482 + 0 482 85529 69 8 46 109 8 40 25 6 7 186 chain 286164 chr1 249250621 + 38891198 38894781 HERVH-int 3825 + 0 3825 14275 333 1 0 39 4 6 152 1 0 40 1 0 7 1 0 15 24 12 14 1 38 27 2 0 15 2 1 10 23 2 68 1 0 19 0 8 420 14 0 120 4 0 339 4 31 299 0 10 112 0 3 930 9 11 39 0 210 265 5 7 223 chain 30132 chr1 249250621 + 38896040 38896451 LTR7 482 + 0 482 84372 69 8 46 109 8 40 25 6 7 186 chain 8795 chr1 249250621 + 38912711 38912854 MER20 218 - 43 188 166669 16 6 7 63 1 0 7 1 2 10 1 2 38 chain 82924 chr1 249250621 + 38935306 38936240 L1PA4 6152 - 0 940 42367 10 0 6 924 chain 25827 chr1 249250621 + 38945405 38945779 THE1B 368 - 0 368 100759 12 1 0 4 3 4 175 2 1 70 8 0 57 1 6 24 2 0 15 chain 39417 chr1 249250621 + 39074828 39075401 LTR1C 686 - 0 641 70134 94 22 45 252 0 2 36 6 10 19 1 34 81 3 1 24 6 14 29 chain 521803 chr1 249250621 + 39094832 39101017 L1PA6 6164 - 2 6162 4984 4 1 0 5 0 2 146 1 3 545 0 1 63 0 2 120 0 1 406 0 3 1671 0 1 4 1 0 851 13 0 345 1 2 169 10 4 566 8 0 336 0 4 116 9 0 225 1 0 48 0 2 254 2 1 23 1 3 67 30 24 143 chain 3388 chr1 249250621 + 39106961 39106999 MLT2B2 565 + 526 564 217343 38 chain 137547 chr1 249250621 + 39112439 39113999 SVA_D 2077 + 0 2077 26552 19 5 0 16 3 1 739 0 80 61 1 38 38 0 1 9 0 404 37 1 2 4 0 1 627 chain 2883 chr1 249250621 + 39115799 39115838 MamRep434 362 - 27 64 227337 19 2 0 18 chain 8756 chr1 249250621 + 39116664 39116765 BC200 147 - 31 133 166880 49 0 1 52 chain 42058 chr1 249250621 + 39131955 39132423 L1PA3long 6157 - 4 471 66548 255 1 0 212 chain 48317 chr1 249250621 + 39132423 39132945 L1PA3long 6157 + 5184 5706 60232 522 chain 38710 chr1 249250621 + 39188569 39189125 MLT2A2 560 - 0 560 71139 87 0 8 52 3 14 115 15 1 85 26 25 173 chain 49200 chr1 249250621 + 39190943 39191537 LTR10C 591 + 0 591 59595 260 5 0 79 0 1 164 5 7 21 1 0 59 chain 26129 chr1 249250621 + 39200698 39201123 MSTA 426 - 5 426 99483 148 64 56 57 1 5 27 1 0 20 6 7 101 chain 26007 chr1 249250621 + 39202918 39203229 AluY 311 + 0 304 99986 127 5 0 143 2 0 34 chain 4650 chr1 249250621 + 39227436 39227489 MER31B 477 + 404 457 199064 53 chain 264249 chr1 249250621 + 39234089 39237018 L1PA4 6152 + 3217 6152 15472 2504 0 1 419 0 5 6 chain 20458 chr1 249250621 + 39252425 39252681 AluYc 301 + 0 272 125736 73 0 15 23 1 0 9 0 2 150 chain 3187 chr1 249250621 + 39253640 39253702 MER3 215 + 146 199 221186 9 7 0 8 2 0 36 chain 6680 chr1 249250621 + 39264621 39264721 L1MA3 4352 + 4235 4332 179827 23 0 1 23 1 0 6 1 0 28 1 0 12 1 0 4 chain 9457 chr1 249250621 + 39277876 39278023 LTR1B 797 + 271 443 163287 12 16 42 33 1 0 85 chain 19969 chr1 249250621 + 39307719 39307950 AluY 311 + 57 289 127239 75 0 1 156 chain 79962 chr1 249250621 + 39310341 39311295 L1PA7 6471 + 5501 6458 43615 118 1 4 623 1 0 62 1 2 148 chain 30467 chr1 249250621 + 39336183 39336500 AluYb8 318 + 0 317 83498 317 chain 25389 chr1 249250621 + 39345393 39345687 AluYc3 301 - 16 300 102744 8 9 0 163 1 0 113 chain 5631 chr1 249250621 + 39360936 39361008 MER41A 554 + 395 468 188758 67 0 1 5 chain 4212 chr1 249250621 + 39386627 39386683 L1MB5 1630 - 498 550 204396 37 4 0 15 chain 17147 chr1 249250621 + 39387937 39388232 AluJb 308 - 12 300 135176 7 6 0 128 63 62 91 chain 23366 chr1 249250621 + 39394114 39394397 AluSp 311 - 8 291 113835 283 chain 17319 chr1 249250621 + 39414719 39415099 L1PB1 5432 + 5062 5404 134738 41 21 11 20 1 0 12 1 0 12 4 0 8 6 4 50 2 1 11 5 4 45 1 0 15 3 0 6 16 6 14 30 28 20 1 0 22 1 0 12 chain 5477 chr1 249250621 + 39432354 39432413 Tigger2 2703 - 165 224 190244 59 chain 1609 chr1 249250621 + 39437890 39438086 Tigger2 2703 - 1951 2122 130127 19 0 3 5 44 16 128 chain 30481 chr1 249250621 + 39439546 39439985 LTR1 825 + 364 819 83466 12 14 16 18 1 13 114 2 0 83 0 1 41 0 3 62 4 5 64 1 0 23 chain 1683 chr1 249250621 + 39439999 39440204 Tigger2 2703 - 2433 2641 130127 68 18 20 23 9 6 20 5 9 62 chain 47053 chr1 249250621 + 39443359 39443981 LTR12 884 - 0 884 61160 15 0 133 191 7 5 102 0 1 60 2 0 23 0 132 222 chain 6880 chr1 249250621 + 39447376 39447467 LOR1b 457 + 0 100 178354 31 1 10 59 chain 124572 chr1 249250621 + 39483451 39486497 L1PB1 5432 - 19 1737 29515 9 1 0 13 1 0 21 1 0 24 2 0 12 10 7 19 25 13 14 1 0 44 1 0 16 2 1 53 2 0 9 6 2 9 1 0 9 1 0 24 3 0 11 312 0 288 646 11 12 8 0 169 0 2 20 11 5 29 0 2 174 1 16 149 0 1 102 337 0 36 0 1 113 15 0 112 1 0 134 1 0 32 chain 25983 chr1 249250621 + 39487625 39487944 HSMAR2 1300 + 4 323 100084 319 chain 23991 chr1 249250621 + 39528092 39528389 AluSp 311 + 1 300 110378 173 0 3 6 0 1 111 2 0 5 chain 75848 chr1 249250621 + 39538997 39540970 MER4-int 2692 - 1561 2618 45573 29 1 0 121 1 0 4 1 2 63 1 0 39 1 0 311 0 9 44 317 0 49 1 0 13 0 4 53 12 25 23 1 0 68 306 0 90 305 0 57 1 0 7 6 1 19 4 1 25 chain 26443 chr1 249250621 + 39567566 39567853 AluYf4 310 + 0 289 98262 278 0 2 9 chain 25115 chr1 249250621 + 39584717 39585013 AluSp 311 + 9 306 104200 128 1 2 167 chain 24263 chr1 249250621 + 39585544 39585847 AluSp 311 - 4 303 108883 56 3 0 131 1 0 112 chain 22774 chr1 249250621 + 39594101 39594383 AluY 311 + 9 295 116706 35 7 13 76 2 0 162 chain 21852 chr1 249250621 + 39600507 39600880 L1MB3 1562 - 38 382 120809 16 4 1 49 57 33 4 1 0 70 1 0 114 0 1 35 1 0 21 chain 10322 chr1 249250621 + 39606933 39607077 MER5A 189 - 26 173 159020 47 7 10 90 chain 5331 chr1 249250621 + 39619884 39619968 5S 121 - 37 121 191714 38 10 0 8 0 10 28 chain 24093 chr1 249250621 + 39621561 39621837 AluYc 301 - 14 292 109778 165 0 2 111 chain 6986 chr1 249250621 + 39643876 39643952 L1PA8 5853 - 0 76 177569 76 chain 12411 chr1 249250621 + 39651940 39652102 AluSc5 308 - 12 174 150595 14 2 0 45 3 5 98 chain 29415 chr1 249250621 + 39690876 39691187 AluYb8 318 - 7 318 87002 311 chain 148332 chr1 249250621 + 39699458 39701100 SVA_F 1814 - 0 1748 24839 16 0 1 587 0 49 195 3 18 67 0 1 21 0 40 753 chain 28262 chr1 249250621 + 39712740 39713042 AluYg6 310 - 8 310 92073 302 chain 29591 chr1 249250621 + 39730330 39730645 AluYb9 318 - 4 318 86231 196 1 0 118 chain 44404 chr1 249250621 + 39754709 39755364 L1MA2 4263 - 150 790 63685 9 1 0 39 14 7 40 0 1 52 13 11 5 0 2 141 17 14 33 1 0 97 1 0 77 4 1 111 chain 21135 chr1 249250621 + 39769693 39769942 L1PA5 6144 - 0 236 123429 157 13 0 79 chain 36635 chr1 249250621 + 39810120 39810711 MER50 708 - 140 708 74050 67 1 0 51 1 0 5 10 12 67 2 1 67 12 9 18 1 0 124 15 16 68 38 19 44 chain 23427 chr1 249250621 + 39836709 39837012 AluSg7 307 + 0 301 113493 18 1 0 113 0 1 126 6 4 39 chain 24675 chr1 249250621 + 39846737 39847018 AluSp 311 - 19 301 106585 22 0 1 259 chain 20797 chr1 249250621 + 39930297 39930598 AluSz 310 + 0 299 124611 34 27 21 150 1 0 5 0 1 63 0 4 21 chain 25254 chr1 249250621 + 40001238 40001525 AluY 311 + 11 298 103455 287 chain 15033 chr1 249250621 + 40002387 40002729 L1MB8 1703 + 1429 1701 141225 6 2 0 146 78 28 15 9 0 38 3 0 14 14 8 17 chain 8494 chr1 249250621 + 40019698 40019898 MLT1C 463 + 204 421 168323 17 1 3 19 1 4 16 67 79 79 chain 17999 chr1 249250621 + 40049839 40050065 AluY 311 + 75 307 132856 10 0 4 42 1 2 33 0 1 140 chain 3166 chr1 249250621 + 40053462 40053499 MER31A 484 + 0 37 221637 37 chain 5496 chr1 249250621 + 40067906 40068046 L1MC1 2226 - 140 268 190081 23 35 28 41 2 0 11 10 7 18 chain 26156 chr1 249250621 + 40072123 40072402 AluYa5 310 + 20 299 99386 279 chain 52105 chr1 249250621 + 40076328 40077446 LTR12D 1347 - 8 933 57561 209 14 15 18 5 79 67 3 7 19 1 2 57 32 31 93 44 0 31 0 17 75 117 0 51 2 33 12 0 1 14 41 0 41 119 0 53 chain 2962 chr1 249250621 + 40077199 40077233 LTR12D 1347 - 655 689 156630 34 chain 4355 chr1 249250621 + 40077274 40077324 LTR12D 1347 - 730 780 156630 50 chain 48977 chr1 249250621 + 40079272 40079868 LTR66 600 - 21 600 59767 106 2 1 19 13 0 46 4 0 122 0 1 284 chain 56611 chr1 249250621 + 40181547 40182788 L1MA3 4352 - 4 886 54771 17 3 0 3 1 0 14 1 0 26 1 0 6 1 0 24 2 0 44 312 0 35 1 0 58 82 54 59 6 0 109 1 0 17 3 5 19 5 4 166 4 6 72 1 0 66 11 7 71 chain 38980 chr1 249250621 + 40193347 40194125 LTR1 825 - 9 813 70767 16 1 0 64 0 1 72 0 3 42 17 18 62 2 1 117 93 147 18 3 19 10 66 6 101 39 51 36 1 2 18 chain 4351 chr1 249250621 + 40195635 40195700 L1MB5 1630 - 16 77 202571 13 1 0 43 3 0 5 chain 31596 chr1 249250621 + 40203231 40203638 LTR46 455 + 9 411 81497 179 3 1 26 0 1 24 3 0 124 1 0 47 chain 3405 chr1 249250621 + 40216258 40216301 Tigger4a 237 + 96 139 217002 43 chain 13233 chr1 249250621 + 40263908 40264097 MER30 238 - 0 207 147348 100 3 0 7 4 0 7 10 35 58 chain 109654 chr1 249250621 + 40273349 40274626 SVA_B 1603 + 0 1603 34289 22 0 26 21 14 1 365 0 192 266 5 129 8 3 0 573 chain 118939 chr1 249250621 + 40334740 40336198 SVA_B 1603 + 6 1603 31440 16 24 6 14 6 5 145 5 4 403 0 37 177 26 108 29 0 40 147 9 10 8 1 0 448 chain 25355 chr1 249250621 + 40353950 40354240 AluSp 311 + 0 293 102919 91 0 3 199 chain 12140 chr1 249250621 + 40370380 40370533 L1PA5 6144 - 2 156 151653 7 4 0 79 0 5 63 chain 138664 chr1 249250621 + 40378175 40379737 SVA_D 2077 - 25 2075 26371 332 0 2 312 0 488 13 2 0 142 8 5 30 0 3 723 chain 5726 chr1 249250621 + 40388482 40388550 PABL_A 660 - 342 410 187882 68 chain 8315 chr1 249250621 + 40410563 40410670 HY1 111 - 0 111 169302 74 0 4 33 chain 20315 chr1 249250621 + 40422377 40422616 AluY 311 + 71 311 126190 55 0 1 184 chain 21319 chr1 249250621 + 40440823 40441077 AluSc 308 - 34 288 122803 254 chain 38341 chr1 249250621 + 40442342 40442857 LTR10D 510 - 0 510 71664 91 2 0 148 2 0 7 0 2 19 9 11 133 1 0 4 0 4 6 5 0 14 3 0 71 chain 5740 chr1 249250621 + 40443721 40443814 L1PB1 5432 - 10 98 187730 18 1 0 12 1 0 22 1 0 22 2 0 14 chain 38365 chr1 249250621 + 40445257 40445875 LTR9B 643 + 23 643 71626 33 8 13 4 1 0 4 1 0 52 8 9 62 7 6 19 5 6 102 4 3 85 29 30 137 17 15 40 chain 4545 chr1 249250621 + 40445942 40446020 MER82 654 - 534 605 200286 21 13 6 44 chain 48403 chr1 249250621 + 40456575 40457507 PABL_B 668 - 24 666 60183 127 0 1 81 13 18 223 306 0 159 1 11 22 chain 24901 chr1 249250621 + 40457030 40457318 AluY 311 + 10 299 105334 122 0 1 166 chain 143861 chr1 249250621 + 40464748 40466308 SVA_F 1814 + 5 1814 25504 850 0 241 31 0 1 4 1 0 365 0 1 191 4 11 114 chain 32718 chr1 249250621 + 40473543 40473916 L1PA5 6144 + 5772 6142 79656 38 0 1 324 4 0 7 chain 12545 chr1 249250621 + 40476756 40476936 L1MA4A 3247 + 2954 3130 150062 14 3 0 139 1 0 23 chain 3044 chr1 249250621 + 40480522 40480556 LTR24C 604 - 570 604 224129 34 chain 29664 chr1 249250621 + 40488021 40488340 AluYb8 318 - 2 318 85986 190 3 0 126 chain 20388 chr1 249250621 + 40546757 40547434 THE1B 368 + 0 368 125935 77 13 27 62 341 0 32 1 0 4 10 13 13 6 14 55 2 0 9 0 10 52 chain 21942 chr1 249250621 + 40547434 40547701 THE1B-int 1605 + 0 268 120454 48 0 1 219 chain 15611 chr1 249250621 + 40549180 40549451 Tigger1 2417 + 1310 1585 139548 17 5 6 65 6 7 72 33 35 73 chain 77096 chr1 249250621 + 40550243 40551242 LTR13 1007 + 0 1007 44919 73 2 0 308 8 9 238 2 1 70 6 13 196 0 5 62 3 1 31 chain 12447 chr1 249250621 + 40559877 40560126 MER1B 344 - 10 299 150470 23 1 0 5 0 1 17 1 40 29 4 0 53 16 17 44 22 25 16 6 7 12 chain 4746 chr1 249250621 + 40560157 40560244 MER96 175 + 34 131 197957 37 13 29 7 6 0 24 chain 15988 chr1 249250621 + 40562079 40562380 Tigger4b 360 + 1 356 138387 11 0 1 14 7 0 13 13 30 50 0 32 111 8 11 14 29 37 31 chain 26149 chr1 249250621 + 40576102 40577021 L1PA16 3655 + 846 1283 99405 16 192 0 7 2 0 106 12 12 31 5 6 49 333 44 166 chain 5307 chr1 249250621 + 40581834 40581935 MER21C 908 - 28 123 191948 15 0 3 4 4 0 8 14 9 56 chain 23488 chr1 249250621 + 40583524 40583806 AluSx1 309 + 8 291 113184 273 0 1 9 chain 13574 chr1 249250621 + 40600231 40600413 AluSc8 310 + 8 197 146078 123 10 14 44 0 3 5 chain 5053 chr1 249250621 + 40603281 40603373 L1MB2 1706 + 764 859 194601 14 6 8 35 4 5 33 chain 2823 chr1 249250621 + 40605112 40605208 L1MC4 1079 - 609 706 228412 30 51 52 15 chain 5748 chr1 249250621 + 40619689 40619819 LTR23-int 503 - 218 348 187661 58 46 46 26 chain 56550 chr1 249250621 + 40632026 40632674 L1PA5 6144 + 5492 6132 54825 108 8 0 532 chain 24274 chr1 249250621 + 40651215 40651529 AluY 311 + 1 311 108815 15 0 12 98 15 0 135 1 0 14 0 2 20 2 0 14 chain 22418 chr1 249250621 + 40660846 40661135 AluSg4 309 + 7 294 118388 12 7 6 254 2 1 14 chain 23153 chr1 249250621 + 40744010 40744258 AluY 311 + 62 311 114880 70 0 1 178 chain 16687 chr1 249250621 + 40746395 40746603 HSMAR1 1287 - 1076 1287 136443 68 0 2 15 0 1 125 chain 2965 chr1 249250621 + 40783927 40783963 MIRb 242 + 107 143 225766 36 chain 6049 chr1 249250621 + 40815055 40815130 MIR 256 - 124 199 184813 75 chain 5989 chr1 249250621 + 40817712 40817781 MER41B 635 - 85 154 185344 69 chain 45980 chr1 249250621 + 40821080 40822887 L1MA3 4352 - 0 1169 62059 22 13 9 4 1 0 29 1 0 5 2 1 22 7 12 116 1080 438 313 1 0 67 5 4 5 0 1 45 24 30 4 0 1 41 chain 495729 chr1 249250621 + 40831199 40836541 L1PA2 6032 + 1 6032 7087 95 0 688 2178 0 1 3069 chain 120710 chr1 249250621 + 40853343 40854827 LTR12C 1709 + 0 1709 30793 186 7 9 313 0 1 210 0 118 116 5 115 23 1 0 21 1 0 5 3 1 98 8 12 18 4 0 315 1 0 66 1 0 82 chain 4559 chr1 249250621 + 40868460 40868511 L1MA4 2864 + 2535 2586 200112 51 chain 7761 chr1 249250621 + 40891446 40891557 MER30 238 - 0 112 172539 73 11 12 27 chain 23977 chr1 249250621 + 40906114 40906392 AluSp 311 - 23 301 110461 278 chain 30902 chr1 249250621 + 40911168 40911630 LTR10B 488 + 0 462 82681 43 9 10 27 5 1 9 26 20 129 3 13 170 1 0 40 chain 63685 chr1 249250621 + 40921292 40922024 L1PA7 6471 - 12 745 51147 143 0 1 589 chain 23187 chr1 249250621 + 40934160 40934507 THE1D 372 - 0 371 114742 147 15 19 14 0 3 24 0 2 27 1 5 27 3 4 19 2 12 68 chain 87654 chr1 249250621 + 40937418 40938429 LTR5A 1029 + 0 1029 40508 112 0 3 19 0 13 804 0 2 76 chain 25544 chr1 249250621 + 40952918 40953435 Tigger2b_Pri 1066 + 21 541 102030 54 6 5 178 43 49 73 121 119 42 chain 10508 chr1 249250621 + 40955848 40956005 MSTB 430 - 244 410 158213 43 19 27 29 0 1 66 chain 29672 chr1 249250621 + 40959929 40960239 AluYa5 310 - 0 310 85943 310 chain 11161 chr1 249250621 + 40971442 40971608 THE1B 368 + 0 164 155583 64 24 22 78 chain 25032 chr1 249250621 + 40979678 40979966 AluY 311 + 8 297 104624 124 0 1 164 chain 12131 chr1 249250621 + 40985968 40986125 MLT2A2 560 + 388 560 151692 18 0 11 106 0 4 33 chain 21689 chr1 249250621 + 40986900 40987568 Tigger1 2417 + 1718 2087 121435 212 49 50 18 14 7 10 294 0 11 1 2 59 chain 82287 chr1 249250621 + 40992379 40993329 L1PA6 6164 + 5212 6162 42633 950 chain 63316 chr1 249250621 + 41002198 41002892 L1PA3long 6157 - 11 705 51313 694 chain 5620 chr1 249250621 + 41023685 41023754 LTR12C 1709 - 732 801 118501 69 chain 33939 chr1 249250621 + 41023754 41024370 LTR12C 1709 - 641 1055 77716 231 1 0 47 201 0 136 chain 8428 chr1 249250621 + 41024074 41024186 LTR12C 1709 - 641 872 168694 56 2 121 54 chain 2771 chr1 249250621 + 41024202 41024234 LTR12C 1709 - 1006 1038 197781 32 chain 41932 chr1 249250621 + 41030885 41031353 L1PA4 6152 + 5672 6140 66714 468 chain 81974 chr1 249250621 + 41037697 41038666 LTR5_Hs 974 + 0 974 42772 285 0 1 126 1 0 407 8 15 37 2 0 103 chain 13683 chr1 249250621 + 41042352 41042564 L1PA8 5853 + 5638 5853 145654 23 24 28 5 0 1 44 3 2 19 1 0 93 chain 155000 chr1 249250621 + 41043034 41044803 L1PA6 6164 + 4392 6162 23978 287 1 0 639 0 4 162 1 0 526 0 1 145 2 0 6 chain 12064 chr1 249250621 + 41044822 41045007 MER51B 395 - 185 395 151927 91 17 23 30 7 26 40 chain 47258 chr1 249250621 + 41064153 41064898 L1PA11 4918 - 289 992 60996 18 19 13 5 1 0 8 1 0 5 21 13 13 1 0 15 31 22 9 4 0 19 3 2 13 2 0 67 2 0 13 2 1 60 9 2 123 0 1 281 chain 6718 chr1 249250621 + 41096995 41097099 MER2B 336 - 2 93 179551 40 13 0 51 chain 15216 chr1 249250621 + 41097900 41098177 Tigger3d 321 + 13 256 140730 21 7 9 5 2 0 142 59 25 41 chain 23326 chr1 249250621 + 41100353 41100639 AluSp 311 + 22 308 114051 286 chain 5720 chr1 249250621 + 41137732 41137797 MSTA 426 + 361 426 187918 65 chain 26834 chr1 249250621 + 41137866 41138160 AluYk4 311 - 8 302 96859 294 chain 24431 chr1 249250621 + 41152042 41152348 AluY 311 + 0 302 107907 108 2 0 10 2 0 184 chain 4488 chr1 249250621 + 41195652 41195705 Tigger1 2417 - 1889 1942 200927 53 chain 14187 chr1 249250621 + 41197465 41197643 MER6A 605 + 365 544 143929 126 0 1 52 chain 28491 chr1 249250621 + 41203573 41203873 AluYa5 310 - 10 310 91221 300 chain 25438 chr1 249250621 + 41241037 41241324 AluSc 308 - 20 307 102504 287 chain 26032 chr1 249250621 + 41244785 41245078 AluY 311 + 5 298 99890 293 chain 27313 chr1 249250621 + 41328910 41329213 AluYk4 311 - 10 311 95234 175 2 0 126 chain 18404 chr1 249250621 + 41333319 41333608 Tigger3b 1229 + 640 958 131773 57 16 31 37 10 9 18 0 15 66 1 5 69 4 0 11 chain 2572 chr1 249250621 + 41341979 41342056 MIR 256 + 116 191 232214 23 35 33 19 chain 21751 chr1 249250621 + 41350799 41351077 AluSq2 311 + 12 288 121206 68 10 9 45 1 0 154 chain 9606 chr1 249250621 + 41372878 41373013 MER21A 919 + 34 175 162568 47 4 5 40 0 6 26 1 0 17 chain 27857 chr1 249250621 + 41423352 41423664 AluYk4 311 + 0 309 93508 132 3 0 177 chain 29793 chr1 249250621 + 41424891 41425334 LTR7B 505 + 0 505 85488 93 0 31 65 35 13 32 1 56 151 14 13 20 0 1 7 2 0 23 chain 21258 chr1 249250621 + 41428049 41428336 AluSp 311 - 24 311 122996 134 4 12 33 8 0 108 chain 14615 chr1 249250621 + 41529913 41530295 L1MC1 2226 + 108 475 142534 31 9 1 26 17 16 21 0 2 7 2 0 52 24 25 22 89 83 23 1 0 58 chain 258782 chr1 249250621 + 41547911 41550808 L1PA3long 6157 + 1666 6157 15760 379 11 1604 2358 0 1 149 chain 216508 chr1 249250621 + 41556740 41559194 L1PA5 6144 + 3664 6135 18086 411 0 1 225 0 14 225 1 0 633 7 8 790 0 2 162 chain 78311 chr1 249250621 + 41582738 41583733 LTR13 1007 + 0 999 44371 73 2 0 308 4 5 28 0 1 268 28 28 104 0 1 81 1 0 11 0 5 62 2 1 23 chain 145750 chr1 249250621 + 41597232 41598998 L1PA6 6164 - 4 1785 25216 214 22 26 93 0 1 79 0 1 453 0 3 248 2 1 5 0 1 59 1 5 469 0 2 121 chain 106712 chr1 249250621 + 41598998 41600269 L1PA6 6164 + 3040 4326 34938 177 1 0 23 0 2 237 0 4 785 1 11 47 chain 540162 chr1 249250621 + 41641936 41648030 L1PA4 6152 + 0 6151 2794 612 0 2 152 0 8 462 0 1 355 0 1 608 0 4 841 0 20 17 1 0 94 1 0 75 0 4 989 0 18 1883 0 1 4 chain 2765 chr1 249250621 + 41654108 41654137 MER3 215 - 16 45 229232 29 chain 4135 chr1 249250621 + 41660918 41660968 MER58A 224 - 128 178 205439 50 chain 46027 chr1 249250621 + 41669182 41669691 MER9a2 513 + 0 513 62020 452 0 4 57 chain 505431 chr1 249250621 + 41670748 41677842 L1PA6 6164 + 3 6161 6501 189 3 4 190 73 26 155 1 0 36 0 1 25 0 68 209 0 4 272 1 0 323 7 11 269 19 21 292 0 1 497 0 3 114 704 14 626 5 19 723 1 6 261 0 4 203 4 5 69 1 0 124 0 1 130 1 0 4 0 1 206 308 0 243 2 0 132 0 3 515 2 0 5 6 8 44 0 3 91 1 0 8 chain 4520 chr1 249250621 + 41671144 41671191 MER9a2 513 + 381 428 200558 47 chain 62174 chr1 249250621 + 41673447 41674113 L1HS 6032 + 5368 6032 51815 658 2 0 6 chain 5528 chr1 249250621 + 41682517 41682583 MLT1C 463 - 49 115 189758 66 chain 16103 chr1 249250621 + 41693685 41693936 MER83B 357 - 76 357 138050 130 24 37 46 0 1 4 1 0 5 5 22 36 chain 39022 chr1 249250621 + 41694972 41695419 L1PA6 6164 + 5715 6162 70711 447 chain 232743 chr1 249250621 + 41717480 41721620 L1PA14 3548 - 63 3456 17158 17 15 17 37 1 0 18 4 2 16 4 2 33 16 11 111 1 0 72 0 4 8 1 0 6 2 0 17 2 0 4 2 0 105 9 5 47 2 0 14 3 1 17 2 1 230 7 3 37 22 24 85 7 4 26 323 0 59 0 4 120 0 1 227 12 60 128 9 15 5 3 0 96 10 4 190 10 13 72 3 7 92 2 1 256 3 4 12 3 4 13 13 1 267 0 4 79 323 0 215 6 0 69 1 0 17 110 0 141 0 1 35 4 2 29 3 1 29 2 1 20 14 13 56 3 0 56 chain 29054 chr1 249250621 + 41720495 41720810 AluYa5 310 + 0 310 88738 118 5 0 192 chain 2552 chr1 249250621 + 41755529 41755580 L2a 937 - 701 750 232455 5 1 0 13 9 8 23 chain 96627 chr1 249250621 + 41768536 41769791 HSMAR1 1287 - 5 1263 37663 9 1 0 116 1 5 82 5 6 283 5 0 178 0 3 341 5 2 131 0 4 98 chain 27238 chr1 249250621 + 41774187 41774555 THE1C 375 - 1 375 95468 24 1 0 141 3 0 5 5 11 5 0 3 4 0 1 180 chain 2838 chr1 249250621 + 41938747 41938777 MER34A 573 + 362 392 228123 30 chain 5687 chr1 249250621 + 42007400 42007466 MIRb 242 + 67 133 188226 66 chain 523433 chr1 249250621 + 42014546 42021301 L1PA6 6164 - 2 6164 4819 4 1 0 115 8 5 75 1 0 4 0 2 1042 2 1 259 0 5 170 4 0 784 2 0 505 2 1 4 1 0 333 616 0 953 0 5 5 2 1 274 1 0 192 0 1 44 0 10 544 0 17 342 6 5 460 chain 50945 chr1 249250621 + 42017890 42018452 L1PA3long 6157 - 0 562 58345 562 chain 22816 chr1 249250621 + 42034491 42034895 MSTA 426 + 0 414 116502 100 9 14 20 20 22 9 0 3 20 3 0 5 14 19 24 29 27 151 chain 26431 chr1 249250621 + 42061259 42061678 MLT2A2 560 + 0 560 98305 47 0 25 96 59 58 76 2 111 15 0 8 124 chain 26381 chr1 249250621 + 42186239 42186621 L1MB1 2102 + 1620 2003 98487 119 8 6 10 1 0 101 2 4 15 1 0 67 2 0 42 0 5 14 chain 6086 chr1 249250621 + 42224813 42224893 MADE1 96 + 0 96 184532 45 3 19 32 chain 11577 chr1 249250621 + 42231902 42232071 MER20 218 + 31 204 153996 49 8 13 65 1 0 46 chain 3102 chr1 249250621 + 42254960 42254993 MIR 256 + 113 146 222879 33 chain 25098 chr1 249250621 + 42263681 42263970 L1PA5 6144 + 5854 6144 104304 22 3 4 264 chain 17590 chr1 249250621 + 42309437 42309659 L1PA4 6152 - 9 225 134026 143 13 7 66 chain 73724 chr1 249250621 + 42320194 42320987 L1HS 6032 - 0 793 46660 793 chain 22685 chr1 249250621 + 42320987 42321231 L1HS 6032 + 4983 5227 116683 244 chain 26957 chr1 249250621 + 42337771 42338194 MER57A1 433 - 0 433 96420 110 54 51 27 6 7 127 0 12 99 chain 25609 chr1 249250621 + 42352103 42352412 AluSp 311 + 2 311 101681 309 chain 376205 chr1 249250621 + 42410240 42414546 HERV17-int 4347 + 12 4332 10878 15 1 0 52 1 0 36 2 0 24 1 0 170 1 2 4 1 0 340 1 0 118 0 1 694 1 2 162 0 1 149 0 2 127 1 0 343 0 1 256 0 14 1473 0 1 333 chain 26921 chr1 249250621 + 42415658 42415980 LTR17 781 + 0 324 96549 176 5 7 141 chain 2762 chr1 249250621 + 42424024 42424173 ERV3-16A3_I-int 1541 + 236 384 229308 15 99 100 13 2 0 20 chain 7292 chr1 249250621 + 42429035 42429117 L1PA5 6144 - 255 337 175496 82 chain 20193 chr1 249250621 + 42429117 42429355 L1PA5 6144 + 5912 6143 126550 85 7 0 146 chain 295214 chr1 249250621 + 42430627 42434947 L1PA10 4194 + 179 4150 13688 10 8 0 12 62 49 21 2 0 15 1 0 8 28 12 7 1 0 22 2 0 11 23 24 10 1 0 14 4 0 9 2 1 5 0 1 68 7 6 4 1 0 36 0 3 22 0 24 189 1 4 25 2 0 88 0 1 4 1 0 318 0 1 460 320 0 97 1 0 252 0 4 79 13 14 67 5 1 171 0 4 258 6 2 17 0 1 46 3 11 25 0 2 80 9 3 35 1 0 274 7 4 21 7 0 985 3 0 34 chain 26216 chr1 249250621 + 42452109 42452410 AluYk4 311 - 10 311 99138 301 chain 58299 chr1 249250621 + 42455394 42456036 L1HS 6032 - 3806 4449 53753 285 0 1 357 chain 346843 chr1 249250621 + 42456036 42459826 L1PA3long 6157 + 2357 6152 11698 875 0 4 1039 0 1 1876 chain 29037 chr1 249250621 + 42493303 42493654 THE1A 353 - 0 353 88822 151 1 0 59 0 4 29 1 0 110 chain 12544 chr1 249250621 + 42495852 42496028 MER30 238 + 37 230 150067 30 1 2 38 4 20 103 chain 33246 chr1 249250621 + 42520391 42520797 L1PA10 4194 - 44 448 78808 33 3 0 40 0 1 330 chain 511542 chr1 249250621 + 42524949 42531036 L1PA4 6152 + 10 6146 6022 19 0 13 4 13 0 75 10 24 12 6 18 939 0 5 58 9 0 474 0 3 442 0 1 10 1 0 23 0 3 573 3 4 70 0 4 387 2 0 74 0 1 1107 0 4 196 0 1 711 0 11 762 0 1 107 chain 29666 chr1 249250621 + 42543473 42543808 L1PA5 6144 + 5789 6124 85973 335 chain 11660 chr1 249250621 + 42552427 42552549 AluYb8 318 - 0 122 153637 122 chain 153848 chr1 249250621 + 42559825 42561530 L1PA3long 6157 - 0 1701 24109 1426 4 0 275 chain 3340 chr1 249250621 + 42561541 42561579 MSTB 430 - 392 430 218219 38 chain 9844 chr1 249250621 + 42567102 42567209 L1PA4 6152 + 6034 6141 161370 107 chain 17129 chr1 249250621 + 42571096 42571292 L1PA7 6471 + 6263 6459 135234 196 chain 23540 chr1 249250621 + 42580743 42581027 AluSg7 307 + 0 284 112905 31 1 0 100 0 1 152 chain 23067 chr1 249250621 + 42606372 42606663 AluY 311 + 3 293 115317 274 5 4 12 chain 23755 chr1 249250621 + 42607151 42607432 AluSg7 307 - 14 297 111745 160 0 2 121 chain 26540 chr1 249250621 + 42657834 42658210 LTR10E 629 - 232 629 97882 21 7 6 46 1 0 27 0 26 97 19 16 158 chain 321034 chr1 249250621 + 42697491 42701220 L1PA4 6152 - 17 6150 12555 34 0 4 284 0 1 504 1 5 447 0 1 951 4 2402 251 8 7 369 0 2 166 20 15 690 chain 84088 chr1 249250621 + 42717159 42718460 L1P1 4361 - 405 1380 41838 206 322 0 62 1 0 391 0 1 137 5 1 177 chain 29027 chr1 249250621 + 42717377 42717687 AluYg6 310 - 0 310 88864 310 chain 199667 chr1 249250621 + 42718460 42720641 L1PA3long 6157 + 3971 6153 19233 890 0 1 445 1 0 516 0 1 329 chain 7923 chr1 249250621 + 42760905 42761066 L1PB4 2604 - 30 196 171498 17 27 26 43 0 2 28 10 14 12 0 1 5 1 0 18 chain 12198 chr1 249250621 + 42782438 42782683 L1PB1 5432 + 5196 5422 151432 22 1 0 13 2 5 45 1 0 15 2 0 6 19 9 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 8 5 4 18 chain 6670 chr1 249250621 + 42821603 42821680 MER34D 576 + 0 77 179905 77 chain 21546 chr1 249250621 + 42828287 42828644 MSTA 426 + 0 403 121979 94 34 62 79 30 28 33 1 21 86 chain 28018 chr1 249250621 + 42907287 42907590 AluYa5 310 - 7 310 92938 303 chain 6925 chr1 249250621 + 42917156 42917265 MER58B 340 - 16 129 177998 19 0 3 16 13 14 61 chain 24288 chr1 249250621 + 42931023 42931324 AluSp 311 - 0 300 108718 226 1 0 74 chain 132203 chr1 249250621 + 42959735 42961187 L1PA3long 6157 + 4703 6157 27589 93 0 2 1359 chain 88253 chr1 249250621 + 42967109 42968273 L1P2 5180 - 4018 5178 40281 207 0 25 137 1 0 6 1 0 233 2 0 39 1 0 8 1 0 182 34 13 63 3 2 98 7 6 141 chain 41880 chr1 249250621 + 42969534 42970043 MER9a2 513 - 4 513 66792 359 13 2 113 6 17 18 chain 10472 chr1 249250621 + 42972928 42973060 HUERS-P3b-int 2065 - 1915 2044 158377 56 3 0 73 chain 40456 chr1 249250621 + 42977507 42978004 MER9a3 513 - 2 498 68654 64 0 2 11 0 1 177 1 0 78 0 1 109 4 0 53 chain 19832 chr1 249250621 + 42996670 42997030 MSTA 426 + 7 392 127703 44 12 0 49 33 52 50 1 2 32 30 27 33 1 21 75 chain 29804 chr1 249250621 + 43008204 43008523 AluYb8 318 - 2 318 85423 190 3 0 126 chain 24465 chr1 249250621 + 43011788 43012070 AluSp 311 + 14 296 107733 282 chain 7251 chr1 249250621 + 43016654 43016738 L1PA3long 6157 - 8 92 175760 84 chain 386791 chr1 249250621 + 43024331 43029236 L1PA8A 6298 + 1687 6290 10554 231 0 4 579 0 1 262 0 3 446 1 0 64 0 1 83 5 6 15 321 0 36 0 4 58 8 10 388 0 1 198 0 1 111 1 0 207 0 4 196 0 5 105 8 0 92 0 1 529 1 0 160 0 3 611 2 0 81 0 1 106 chain 8377 chr1 249250621 + 43034715 43034810 U6 107 + 12 107 168981 95 chain 84825 chr1 249250621 + 43034810 43035796 L1PA7 6471 + 5469 6459 41579 145 0 3 292 1 2 548 chain 7984 chr1 249250621 + 43056008 43056129 MSTB-int 1649 + 0 120 171145 16 18 17 87 chain 25544 chr1 249250621 + 43083900 43084194 AluSp 311 - 5 299 102025 294 chain 21791 chr1 249250621 + 43085022 43085436 LTR49 580 - 1 433 121057 84 70 69 45 6 36 19 1 0 4 0 1 59 5 0 85 0 1 4 14 7 18 chain 23417 chr1 249250621 + 43092240 43092596 THE1A 353 + 0 353 113556 110 1 0 6 5 4 113 9 10 67 12 10 33 chain 127347 chr1 249250621 + 43092596 43094152 THE1A-int 1579 + 0 1574 28730 176 1 0 326 0 1 73 0 1 314 0 1 38 4 16 191 0 1 136 0 1 76 0 1 217 0 1 4 chain 27262 chr1 249250621 + 43094157 43094511 THE1A 353 + 0 353 95393 110 1 0 119 0 1 4 2 1 118 chain 22300 chr1 249250621 + 43099450 43099787 THE1C 375 - 0 333 118910 26 1 0 126 0 3 25 9 10 107 22 15 21 chain 4839 chr1 249250621 + 43187727 43188295 L1M4c 1769 + 503 820 196889 36 492 241 40 chain 92278 chr1 249250621 + 43216226 43217233 SVA_E 1901 + 869 1879 38883 54 1 0 4 3 0 31 14 21 900 chain 15551 chr1 249250621 + 43217301 43217497 THE1B 368 + 173 368 139727 121 2 1 73 chain 30336 chr1 249250621 + 43252989 43253306 AluYb9 318 + 0 317 83830 317 chain 26940 chr1 249250621 + 43264404 43264714 AluYf5 307 - 0 307 96486 43 6 4 155 1 0 105 chain 43943 chr1 249250621 + 43269862 43270376 MER9a2 513 - 0 513 64273 68 2 0 358 0 1 86 chain 67885 chr1 249250621 + 43280304 43281049 L1PA5 6144 + 5399 6144 49295 745 chain 3046 chr1 249250621 + 43294014 43294137 MIR 256 - 93 217 224090 23 73 74 27 chain 28169 chr1 249250621 + 43329719 43330028 AluYf4 310 + 1 310 92404 309 chain 289499 chr1 249250621 + 43331936 43335470 HERVL-int 5654 + 2103 5654 14053 154 0 7 285 0 1 453 6 6 70 0 1 99 0 1 761 0 1 91 0 4 28 0 1 157 0 1 510 0 1 81 7 2 7 0 6 499 1 4 23 0 1 55 2 1 6 1 0 15 1 0 92 6 18 30 22 6 8 0 1 64 chain 33276 chr1 249250621 + 43335470 43335914 MLT2A2 560 + 0 560 78763 180 2 0 122 2 111 45 0 5 87 0 4 6 chain 161692 chr1 249250621 + 43337884 43340246 L1PA15 4387 - 21 2357 23102 11 1 0 26 5 0 14 3 1 44 16 13 40 2 1 8 4 0 14 1 0 9 3 4 51 1 0 25 2 1 96 13 6 11 2 8 51 7 6 36 2 0 16 0 2 60 2 0 179 7 8 135 1 2 240 2 0 45 16 14 17 6 5 233 44 36 265 0 1 60 11 14 140 0 3 172 10 11 103 1 0 6 1 0 4 0 1 88 chain 418367 chr1 249250621 + 43359660 43365400 L1PB1 5432 - 12 5420 9576 16 1 0 13 1 0 21 1 0 24 2 0 13 9 6 19 17 7 5 1 0 16 1 0 3 314 0 40 1 0 14 5 4 52 2 0 5 20 15 13 1 0 20 13 11 122 9 14 152 3 4 188 4 0 214 0 4 246 0 1 200 4 6 161 3 5 54 13 6 884 2 0 1122 0 4 306 2 0 7 10 16 170 0 1 658 0 1 68 0 3 462 1 0 12 chain 10721 chr1 249250621 + 43373912 43374075 Tigger3a 397 + 158 335 157318 78 0 28 13 12 0 3 2 0 55 chain 4520 chr1 249250621 + 43381950 43382306 LTR12C 1709 - 270 1019 200557 30 267 423 32 4 241 23 chain 3267 chr1 249250621 + 43382366 43382403 LTR12C 1709 - 641 678 219645 37 chain 22953 chr1 249250621 + 43421937 43422284 AluSp 311 + 1 295 115838 19 14 0 112 34 10 146 15 0 7 chain 7302 chr1 249250621 + 43429636 43429738 MER96B 391 + 224 323 175433 33 0 1 33 3 0 12 1 0 20 chain 12170 chr1 249250621 + 43441629 43441834 LTR49 580 - 7 204 151538 105 2 1 6 0 1 8 33 25 51 chain 23421 chr1 249250621 + 43454012 43454280 AluSp 311 + 1 297 113536 152 0 28 116 chain 6651 chr1 249250621 + 43457108 43457184 U6 107 + 0 76 180074 76 chain 25900 chr1 249250621 + 43460107 43460395 AluSp 311 - 22 311 100433 147 0 1 141 chain 16327 chr1 249250621 + 43470291 43470602 THE1C 375 - 67 375 137414 66 54 56 5 0 2 48 9 1 39 10 11 80 chain 22560 chr1 249250621 + 43479735 43480091 L1PB2 3958 + 3484 3837 117762 29 10 8 24 10 9 64 1 0 59 4 3 42 2 1 52 1 0 40 1 5 17 chain 11655 chr1 249250621 + 43513730 43513914 MER30 238 + 25 228 153668 68 13 5 13 1 25 16 0 6 41 3 0 29 chain 3062 chr1 249250621 + 43545606 43545640 MSTA 426 - 29 63 223772 34 chain 29547 chr1 249250621 + 43551204 43551592 LTR7 482 + 0 482 86427 113 0 51 60 0 1 5 0 31 46 7 17 41 1 2 115 chain 294279 chr1 249250621 + 43551594 43555216 HERVH-int 3825 + 0 3825 13749 499 0 4 21 23 22 24 1 0 10 1 0 8 5 1 14 7 1 14 1 0 13 3 0 14 12 11 41 1 0 82 0 1 4 2 0 6 10 18 184 1 0 280 0 1 156 9 0 29 0 2 10 1 0 309 0 1 306 8 13 373 0 2 43 1 0 527 35 37 39 0 210 495 chain 28931 chr1 249250621 + 43556444 43556828 LTR7 482 + 0 482 89319 113 0 51 60 0 1 39 0 31 12 7 17 41 1 2 56 0 4 55 chain 112030 chr1 249250621 + 43572015 43573747 LTR12C 1709 - 0 1709 33654 84 1 0 397 44 13 82 0 47 238 8 0 11 1 0 17 0 119 230 150 1 93 1 2 73 1 2 18 19 20 178 62 60 24 chain 20580 chr1 249250621 + 43574913 43575275 THE1B 368 + 0 368 125362 105 18 19 53 69 72 37 0 2 80 chain 549200 chr1 249250621 + 43580198 43586187 L1PA2 6032 - 1 6031 1550 149 1 3 407 0 16 3264 0 1 869 0 3 293 0 1 711 0 3 272 0 15 23 chain 13981 chr1 249250621 + 43588047 43588241 MER44A 345 - 11 208 144649 150 8 11 36 chain 80831 chr1 249250621 + 43604446 43605412 LTR13A 966 + 0 966 43257 117 10 11 256 1 0 582 chain 21196 chr1 249250621 + 43625366 43625625 AluY 311 + 48 309 123224 84 0 1 106 4 5 65 chain 109772 chr1 249250621 + 43643708 43644956 L1PA5 6144 + 4882 6135 34264 409 0 4 686 15 16 138 chain 24983 chr1 249250621 + 43667296 43667585 AluSp 311 - 22 311 104892 289 chain 67374 chr1 249250621 + 43673710 43674466 L1PA5 6144 + 5373 6135 49496 365 0 6 391 chain 6824 chr1 249250621 + 43713846 43713981 LOR1-int 1871 - 536 687 178766 14 0 17 10 17 0 24 1 0 6 1 0 43 2 20 17 chain 22966 chr1 249250621 + 43723826 43724190 LOR1b 457 - 7 415 115778 146 0 4 17 5 4 33 34 68 35 5 12 89 chain 57687 chr1 249250621 + 43726415 43727586 LTR12 884 + 0 884 54141 148 0 107 32 4 5 63 0 22 144 0 2 169 103 0 17 1 0 84 315 0 91 chain 35017 chr1 249250621 + 43729400 43730003 LOR1-int 1871 - 556 1145 76167 48 2 1 37 1 3 8 2 0 37 1 0 28 6 1 22 1 0 19 35 31 79 0 1 97 3 4 10 2 0 45 0 1 34 1 0 33 0 1 12 17 14 23 chain 6807 chr1 249250621 + 43753471 43753641 L1MB5 1630 - 65 238 178899 12 0 4 31 70 69 57 chain 24671 chr1 249250621 + 43756932 43757230 AluSc5 308 - 1 297 106602 10 3 0 256 0 1 29 chain 7904 chr1 249250621 + 43758252 43758539 AluJb 308 + 17 300 171619 29 13 148 10 145 0 55 3 9 32 chain 3632 chr1 249250621 + 43768662 43768706 MIRb 242 + 74 118 213112 44 chain 23171 chr1 249250621 + 43840116 43840492 MER1B 344 - 0 344 114809 39 5 0 19 38 19 46 4 0 128 17 13 80 chain 72586 chr1 249250621 + 43878256 43879653 L1MA3 4352 + 3167 4238 47226 14 0 1 68 0 3 38 0 1 95 44 26 167 0 2 25 23 24 54 294 0 33 6 5 280 0 3 36 21 21 28 36 15 7 3 0 125 chain 2962 chr1 249250621 + 43920338 43920395 MLT1M 334 + 48 106 225851 17 14 15 26 chain 13200 chr1 249250621 + 43926095 43926358 L1PB1 5432 + 5158 5424 147465 11 3 1 50 2 1 15 2 1 44 1 0 15 3 0 17 8 0 14 25 43 20 0 3 11 1 0 16 1 0 4 chain 28392 chr1 249250621 + 43952558 43952919 THE1C 375 - 0 362 91610 190 3 4 168 chain 9102 chr1 249250621 + 43952935 43953072 L1MB7 1623 - 1433 1566 165060 95 1 3 17 6 0 18 chain 153720 chr1 249250621 + 43966928 43968639 SVA_D 2077 + 0 2073 24123 8 1 0 5 1 0 3 1 0 12 0 11 428 1 40 372 0 310 157 0 1 41 0 1 272 0 3 409 chain 63884 chr1 249250621 + 44103899 44104601 L1PA5 6144 + 5433 6137 51061 242 0 2 460 chain 24764 chr1 249250621 + 44126648 44126939 AluSp 311 - 15 305 106089 176 1 0 114 chain 24361 chr1 249250621 + 44166597 44166889 AluSc 308 - 14 308 108311 184 0 2 108 chain 6473 chr1 249250621 + 44182139 44182222 U6 107 + 2 102 181444 52 0 17 31 chain 9525 chr1 249250621 + 44193750 44193864 L1PA16 3655 - 110 224 162956 114 chain 10367 chr1 249250621 + 44213689 44213824 MER21C 908 - 678 907 158846 94 0 94 41 chain 13809 chr1 249250621 + 44233346 44233505 L1PA7 6471 + 6311 6470 145227 159 chain 25784 chr1 249250621 + 44237029 44237326 AluYf4 310 - 11 309 100943 86 0 1 211 chain 43110 chr1 249250621 + 44242982 44243501 L1PA11 4918 + 3704 4244 65278 198 0 1 18 0 20 303 chain 44637 chr1 249250621 + 44285604 44286207 L1P4 1494 + 759 1370 63442 139 14 18 218 0 5 213 1 0 18 chain 22329 chr1 249250621 + 44306169 44306453 MER11C 1089 + 779 1063 118784 86 0 1 54 1 0 143 chain 25199 chr1 249250621 + 44310201 44310512 AluY 311 + 0 296 103746 146 15 0 150 chain 23945 chr1 249250621 + 44391978 44392291 AluSp 311 + 0 296 110648 79 1 0 154 22 6 57 chain 21840 chr1 249250621 + 44504066 44504323 L1PA6 6164 - 11 268 120856 257 chain 2843 chr1 249250621 + 44531597 44531643 L1ME3F 937 + 364 403 227967 6 7 0 33 chain 11017 chr1 249250621 + 44536073 44536218 L1PB4 2604 - 62 207 156135 145 chain 23941 chr1 249250621 + 44551860 44552143 AluSp 311 + 4 287 110676 283 chain 3692 chr1 249250621 + 44554976 44555071 LTR16A 446 - 92 187 212054 6 1 0 38 36 37 14 chain 3203 chr1 249250621 + 44588578 44588617 L1MC4 1079 - 670 709 220887 39 chain 24059 chr1 249250621 + 44590167 44590453 AluYf4 310 - 11 296 109990 91 0 1 143 2 0 50 chain 18195 chr1 249250621 + 44618698 44618965 L1PA5 6144 - 12 235 132340 12 3 0 41 43 0 84 0 2 84 chain 7139 chr1 249250621 + 44619059 44619142 HY4 93 - 0 83 176473 83 chain 100953 chr1 249250621 + 44639263 44640793 MER4-int 2692 - 0 1552 36521 11 1 2 133 16 22 30 0 1 6 4 5 107 13 15 77 29 17 136 0 3 81 5 8 40 4 3 122 8 9 212 23 13 56 0 4 66 6 33 70 1 0 84 2 0 14 8 6 52 23 24 90 chain 22346 chr1 249250621 + 44642086 44642379 AluSp 311 + 0 300 118720 53 5 13 187 5 4 43 chain 5549 chr1 249250621 + 44645654 44645740 LTR7 482 + 395 482 189572 24 14 15 48 chain 25119 chr1 249250621 + 44850603 44850881 L1PA3long 6157 - 15 294 104180 243 0 1 35 chain 11583 chr1 249250621 + 44853070 44853228 L1PA8 5853 - 0 156 153956 92 4 3 17 2 1 43 chain 22819 chr1 249250621 + 44863859 44864113 L1PA3long 6157 + 5888 6142 116497 254 chain 24410 chr1 249250621 + 44915602 44915893 AluSp 311 + 1 293 108026 98 0 2 148 1 0 44 chain 16969 chr1 249250621 + 44947078 44947320 L1PA8A 6298 + 6050 6292 135672 117 1 0 14 15 4 7 0 11 27 0 1 61 chain 4268 chr1 249250621 + 44958537 44958589 Tigger4b 360 + 0 52 203651 52 chain 4775 chr1 249250621 + 44977160 44977226 X8_LINE 244 + 138 203 197646 24 1 0 41 chain 45169 chr1 249250621 + 44995347 44996354 Ricksha_0 1343 - 55 716 62853 101 350 27 180 35 22 196 10 1 23 1 0 111 chain 13002 chr1 249250621 + 45000000 45000143 L1PA4 6152 - 3 146 148242 143 chain 3133 chr1 249250621 + 45051404 45051439 MIR 256 + 73 108 222300 35 chain 3552 chr1 249250621 + 45064806 45064844 MER66B 489 + 295 333 214520 38 chain 10485 chr1 249250621 + 45167649 45167775 AluJr 308 + 158 284 158307 126 chain 24323 chr1 249250621 + 45175065 45175359 AluSc8 310 + 3 301 108532 129 0 3 126 0 1 39 chain 5025 chr1 249250621 + 45187511 45187571 U5 65 - 2 62 194876 60 chain 5787 chr1 249250621 + 45196778 45196842 U5 65 - 1 65 187297 64 chain 90927 chr1 249250621 + 45203744 45204806 SVA_B 1603 + 51 1340 39317 372 0 116 74 0 37 201 2 83 42 1 0 33 6 0 331 chain 12256 chr1 249250621 + 45230999 45231140 L1PA5 6144 + 6002 6143 151178 141 chain 16317 chr1 249250621 + 45233961 45234185 AluSp 311 + 21 292 137444 51 10 19 41 2 0 35 0 40 85 chain 22791 chr1 249250621 + 45238395 45238749 L1MA1 4479 + 3860 4190 116627 39 8 0 48 1 0 5 3 0 48 1 0 78 1 0 29 2 0 35 1 0 4 18 18 8 7 0 18 chain 3929 chr1 249250621 + 45249416 45249463 MER5A 189 + 22 70 208432 15 0 1 32 chain 24451 chr1 249250621 + 45264944 45265239 AluSp 311 + 10 296 107798 110 9 0 176 chain 5377 chr1 249250621 + 45285605 45285669 U5 65 - 1 65 191225 64 chain 130150 chr1 249250621 + 45341422 45342882 SVA_D 2077 + 6 2077 28058 25 7 1 196 0 1 158 0 3 69 0 76 373 0 537 632 chain 3275 chr1 249250621 + 45373637 45373675 MLT1H 522 + 66 104 219446 38 chain 40344 chr1 249250621 + 45377389 45377826 L1PA3long 6157 - 8 446 68819 148 0 1 289 chain 87734 chr1 249250621 + 45386358 45387976 L1MA2 4263 - 150 1422 40466 9 1 0 38 13 6 95 18 16 84 1 0 59 39 36 69 0 3 11 0 1 23 1 0 14 15 11 50 22 21 167 0 1 127 0 1 169 6 7 164 334 0 21 1 2 67 chain 73315 chr1 249250621 + 45419875 45420758 L1PA7 6471 - 1460 2366 46836 26 0 1 69 0 10 227 0 8 184 0 1 173 0 3 35 1 0 50 7 8 111 chain 118414 chr1 249250621 + 45420758 45422169 L1PA7 6471 + 5026 6465 31641 98 0 5 418 0 1 21 2 1 51 0 4 186 1 0 120 2 0 390 1 0 42 5 6 53 0 22 21 chain 24300 chr1 249250621 + 45438001 45438280 AluSp 311 + 9 288 108654 279 chain 29517 chr1 249250621 + 45450469 45450777 AluYb8 318 - 10 318 86578 308 chain 23337 chr1 249250621 + 45529387 45529672 AluY 311 + 5 301 113994 93 1 11 23 0 1 168 chain 291091 chr1 249250621 + 45537430 45541808 L1MA2 4263 - 178 4258 13949 18 18 11 70 2 4 17 15 9 35 1 0 4 4 13 33 1 3 55 20 17 134 2 1 74 7 3 21 7 11 105 0 1 227 1 0 24 0 1 7 1 0 131 0 1 61 2 7 58 31 23 64 1 6 190 7 5 38 316 0 362 6 7 227 1 0 37 1 0 90 0 1 59 0 11 30 2 0 317 2 0 11 0 9 5 1 0 125 0 1 116 0 1 130 0 6 14 4 3 104 0 1 122 11 15 202 0 1 110 11 7 136 10 14 78 11 3 66 0 1 8 8 4 7 2 0 86 3 7 13 0 4 29 2 1 17 chain 75742 chr1 249250621 + 45542931 45543978 MER11C 1089 - 26 1089 45625 25 0 1 117 1 0 55 1 2 125 0 1 38 1 0 4 1 5 91 71 70 143 1 0 69 0 4 50 7 16 247 chain 33925 chr1 249250621 + 45544574 45545024 LTR7 482 + 0 482 77735 101 15 14 109 5 37 46 0 1 174 chain 93419 chr1 249250621 + 45546938 45548013 SVA_D 2077 + 6 2077 38528 13 5 6 14 18 1 460 0 1011 374 0 1 191 chain 12011 chr1 249250621 + 45549881 45550052 MSTA 426 - 231 426 152149 58 6 30 39 2 3 21 1 0 44 chain 20987 chr1 249250621 + 45552214 45552459 L1PA6 6164 + 5914 6160 123963 110 0 1 135 chain 23009 chr1 249250621 + 45559741 45560014 AluSc5 308 - 24 297 115584 273 chain 308565 chr1 249250621 + 45564193 45567719 L1PA6 6164 + 2623 6162 13064 566 0 1 504 0 1 257 0 1 538 3 2 600 0 6 216 0 3 225 0 1 287 0 1 330 chain 141788 chr1 249250621 + 45570685 45572897 SVA_A 1864 + 65 1861 25859 4 1 0 230 0 1 103 0 116 178 3 0 65 0 2 43 308 0 80 1 0 139 105 0 35 2 0 82 1 0 65 78 0 21 38 0 348 0 1 206 0 1 76 chain 5586 chr1 249250621 + 45571317 45571406 SVA_A 1864 + 846 933 75341 39 1 0 19 7 6 23 chain 5202 chr1 249250621 + 45571406 45571506 SVA_A 1864 + 404 504 59876 100 chain 2558 chr1 249250621 + 45571506 45571548 SVA_A 1864 + 881 922 68175 5 1 0 36 chain 2336 chr1 249250621 + 45571585 45571620 SVA_A 1864 + 809 844 66429 35 chain 4738 chr1 249250621 + 45571874 45571945 SVA_A 1864 + 1063 1137 66429 64 0 3 7 chain 3954 chr1 249250621 + 45572130 45572206 SVA_A 1864 + 877 950 59876 9 8 7 18 6 4 35 chain 116808 chr1 249250621 + 45580318 45581811 SVA_B 1603 - 0 1603 32190 52 0 2 569 0 77 25 4 0 14 1 0 231 115 0 296 0 144 48 0 1 97 19 25 22 chain 10254 chr1 249250621 + 45581216 45581329 SVA_B 1603 - 973 1086 133461 113 chain 146725 chr1 249250621 + 45598286 45599918 L1PA5 6144 - 0 1635 25051 259 1 0 590 0 4 782 chain 7897 chr1 249250621 + 45600899 45601068 L1MB2 1706 + 1532 1694 171670 21 42 30 14 2 1 13 1 0 63 0 7 13 chain 27003 chr1 249250621 + 45618132 45618513 L1P4 1494 + 995 1375 96270 74 13 14 49 0 1 52 2 0 165 1 0 25 chain 139068 chr1 249250621 + 45619380 45621703 L1PB1 5432 + 3427 5427 26283 107 3 0 186 10 12 332 0 6 244 308 0 77 1 13 104 0 4 116 0 2 63 0 4 7 3 1 15 16 19 68 9 6 109 0 1 19 0 4 78 18 14 34 5 0 30 2 3 9 3 0 9 0 1 14 1 0 9 1 0 7 9 5 9 2 0 52 3 1 16 1 0 37 11 10 12 1 0 4 29 17 10 2 0 4 1 0 15 2 0 24 1 0 21 2 1 12 1 0 18 2 0 5 chain 536549 chr1 249250621 + 45628026 45634154 L1PA5 6144 + 0 6135 3370 121 0 14 1019 0 3 12 9 0 233 3 8 900 0 4 214 0 1 1480 1 0 197 2 0 446 1 0 642 1 0 174 1 2 522 7 0 143 chain 3793 chr1 249250621 + 45645297 45645356 L1MB8 1703 + 82 146 210482 25 5 10 29 chain 556032 chr1 249250621 + 45645616 45652083 L1PA3long 6157 + 0 6157 721 364 0 2 1215 0 3 598 317 0 359 0 1 1155 0 1 1609 1 0 174 1 2 674 chain 26310 chr1 249250621 + 45647806 45648082 AluYd8 298 + 0 276 98790 276 chain 24249 chr1 249250621 + 45656606 45656904 AluYk4 311 - 0 311 108951 202 22 35 74 chain 12001 chr1 249250621 + 45688214 45688656 HSMAR1 1287 + 25 460 49337 83 33 23 10 0 2 93 2 3 30 0 6 20 6 0 165 chain 78831 chr1 249250621 + 45688656 45689521 SVA_E 1901 + 898 1883 44133 29 4 0 168 0 127 38 4 1 622 chain 13793 chr1 249250621 + 45690202 45690710 HSMAR1 1287 + 781 1287 49337 327 8 6 173 chain 5524 chr1 249250621 + 45697895 45697973 MADE1 96 - 0 96 189797 31 1 19 46 chain 5120 chr1 249250621 + 45703581 45703645 L1ME2z 1083 + 163 227 193872 64 chain 22192 chr1 249250621 + 45704252 45704535 AluSp 311 + 8 295 119384 40 10 9 192 0 5 41 chain 112359 chr1 249250621 + 45706141 45707979 THE1B-int 1605 - 9 1600 33574 27 6 21 104 0 3 137 313 0 33 0 1 151 16 17 257 7 19 8 0 7 129 2 0 137 0 1 93 14 39 142 11 14 221 2 5 5 3 0 20 chain 24571 chr1 249250621 + 45707984 45708341 THE1B 368 - 0 368 107132 124 12 20 10 22 26 11 0 1 4 2 0 172 chain 6802 chr1 249250621 + 45709929 45710018 L1MA4A 3247 + 3038 3126 178941 69 1 0 19 chain 93620 chr1 249250621 + 45713143 45714221 SVA_B 1603 + 7 1264 38469 13 8 0 17 1 25 134 1 0 590 0 164 314 chain 10813 chr1 249250621 + 45724847 45725036 MSTA-int 1630 + 1435 1619 156929 53 6 8 18 8 0 52 20 21 32 chain 27876 chr1 249250621 + 45734014 45734367 THE1A 353 + 0 353 93432 84 0 1 17 9 8 119 0 1 4 1 0 119 chain 127220 chr1 249250621 + 45734367 45736277 THE1A-int 1579 + 0 1579 28764 177 0 1 181 331 0 262 6 7 16 3 0 72 0 1 298 1 0 127 3 2 89 0 1 195 5 6 144 chain 13803 chr1 249250621 + 45736277 45736488 THE1A 353 + 0 212 145260 62 0 1 21 0 1 17 23 22 88 chain 9359 chr1 249250621 + 45736497 45736626 THE1A 353 + 220 353 163757 82 10 14 37 chain 546325 chr1 249250621 + 45750237 45756381 L1PA4 6152 + 3 6152 1906 472 7 11 52 5 1 820 11 10 2982 0 4 309 0 1 1238 0 1 248 chain 107134 chr1 249250621 + 45776007 45777747 MER4-int 2692 + 547 2014 34937 141 3 5 21 14 18 393 0 3 193 0 1 72 7 23 17 1 0 31 2 3 5 0 2 49 0 1 115 303 0 112 1 3 136 1 0 123 chain 24986 chr1 249250621 + 45779217 45779512 AluYk4 311 - 17 311 104880 30 1 0 264 chain 15473 chr1 249250621 + 45785217 45785410 HERVH-int 3825 + 3405 3825 139984 12 0 227 181 chain 25253 chr1 249250621 + 45787987 45788258 MER9a1 513 + 242 513 103464 271 chain 21803 chr1 249250621 + 45789506 45790244 LTR19A 502 + 0 501 121008 34 27 26 119 0 74 20 19 0 4 19 0 57 335 41 55 19 41 30 chain 8829 chr1 249250621 + 45790245 45790349 MER4A1 472 - 365 469 166497 104 chain 29505 chr1 249250621 + 45802025 45802451 LTR7B 505 + 0 495 86617 108 0 10 57 17 77 27 0 3 80 1 0 45 2 0 34 14 13 41 chain 9740 chr1 249250621 + 45807381 45807584 L1PB1 5432 - 9 193 161891 4 1 0 15 1 0 13 1 0 21 1 0 24 0 2 12 10 7 17 15 6 6 4 0 15 1 0 42 chain 6851 chr1 249250621 + 45836583 45836691 L1MB2 1706 + 349 503 178570 6 0 4 66 9 51 27 chain 5749 chr1 249250621 + 45854313 45854384 MSTC 436 + 4 75 187641 71 chain 23378 chr1 249250621 + 45864987 45865275 AluSp 311 - 16 300 113769 5 3 0 158 1 0 121 chain 16462 chr1 249250621 + 45881509 45881733 MER30 238 + 0 237 137033 110 11 24 103 chain 4908 chr1 249250621 + 45883166 45883230 L1MA7 2200 - 1026 1100 196177 51 0 10 13 chain 20684 chr1 249250621 + 45887759 45888041 L1PA8A 6298 + 5972 6291 125026 119 11 30 89 5 6 31 0 17 27 chain 142223 chr1 249250621 + 45890372 45893682 L1MA3 4352 + 1866 4311 25775 218 0 7 220 4 2 23 0 1 4 6 5 23 17 21 72 0 1 9 875 322 22 0 1 123 2 0 197 2 1 13 0 4 9 0 2 100 0 7 114 3 0 5 14 13 173 351 40 116 0 1 290 0 2 23 1 3 14 3 0 26 51 26 19 0 10 31 1 0 20 0 4 32 4 0 23 2 0 24 1 0 6 1 0 23 chain 4551 chr1 249250621 + 45897230 45897334 Tigger4a 237 + 125 236 200204 44 8 7 11 20 28 21 chain 24562 chr1 249250621 + 45898090 45898372 AluY 311 + 9 292 107182 123 0 1 159 chain 4818 chr1 249250621 + 45900557 45900614 L1MA4A 3247 - 617 674 197143 57 chain 43960 chr1 249250621 + 45920659 45921248 LTR26E 604 + 0 591 64252 162 1 0 30 0 2 35 0 1 64 2 1 154 1 0 40 1 0 5 0 1 31 0 2 63 chain 35132 chr1 249250621 + 45929560 45930301 L1MA3 4352 - 1469 1981 76018 24 9 6 80 1 2 5 1 0 24 14 18 142 1 0 26 224 0 44 5 0 141 chain 3809 chr1 249250621 + 45947130 45947174 Tigger2b_Pri 1066 + 0 44 210246 44 chain 77535 chr1 249250621 + 45963191 45964072 SVA_D 2077 + 327 2075 44722 152 0 825 10 0 1 27 1 0 19 0 49 659 7 0 6 chain 24405 chr1 249250621 + 45968368 45968676 AluSp 311 - 4 311 108049 187 3 0 9 1 3 108 chain 77985 chr1 249250621 + 45979182 45980137 LTR5_Hs 974 + 0 974 44517 13 0 4 196 1 0 28 2 0 44 0 1 114 3 0 18 0 10 394 5 12 37 2 0 30 0 5 68 chain 77966 chr1 249250621 + 45993774 45994740 LTR5_Hs 974 + 3 974 44537 166 1 0 116 0 1 181 0 1 188 1 0 163 8 15 31 8 6 103 chain 202529 chr1 249250621 + 46039112 46045501 MER61-int 3695 - 0 3564 19022 262 0 6 73 1 0 11 1 0 92 1 0 13 1 2 12 11 71 94 205 199 23 5 6 63 1 6 146 8 6 404 315 0 20 0 3 40 49 1 7 0 4 247 11 12 8 316 0 73 3 0 123 0 1 45 1419 0 56 3 0 9 639 14 19 1 0 99 0 1 5 1 0 4 1 6 64 2 1 212 0 5 77 0 6 37 9 18 60 1 0 74 2 0 22 1 9 57 16 12 144 0 18 8 601 392 62 chain 87098 chr1 249250621 + 46042069 46043153 MER11B 1079 + 0 1079 40740 225 0 5 30 3 0 97 2 1 202 37 35 142 0 1 31 6 0 276 9 10 24 chain 23353 chr1 249250621 + 46055934 46056248 AluY 311 + 0 309 113909 76 0 1 74 32 27 54 1 0 77 chain 175509 chr1 249250621 + 46189681 46191758 SVA_E 1901 + 0 1883 21394 145 1 0 599 40 0 73 1 0 19 1 0 87 53 0 42 97 0 130 1 0 788 chain 2550 chr1 249250621 + 46190663 46190700 SVA_E 1901 + 935 972 113130 13 11 11 13 chain 6685 chr1 249250621 + 46190742 46190839 SVA_E 1901 + 1014 1140 113130 38 22 50 26 6 7 5 chain 26212 chr1 249250621 + 46202432 46202738 AluY 311 + 3 306 99157 123 3 0 180 chain 7019 chr1 249250621 + 46204582 46204669 MER82 654 - 520 607 177328 87 chain 64859 chr1 249250621 + 46205496 46206220 SVA_D 2077 - 0 1028 50628 126 0 1 408 0 225 117 0 78 73 chain 28859 chr1 249250621 + 46207295 46207599 AluYk11 308 - 4 308 89624 304 chain 59890 chr1 249250621 + 46230728 46231375 SVA_B 1603 - 0 725 52880 600 0 78 47 chain 24490 chr1 249250621 + 46241960 46242256 AluSp 311 - 6 298 107597 10 4 0 282 chain 24523 chr1 249250621 + 46242968 46243245 L1PA5 6144 - 4 281 107423 277 chain 14159 chr1 249250621 + 46264765 46264916 L1PA3long 6157 + 6004 6155 144015 151 chain 47944 chr1 249250621 + 46282649 46283450 L1M1 2793 + 1201 2010 60528 47 4 0 23 16 6 32 1 0 4 0 1 16 0 1 24 0 4 64 30 33 62 1 7 5 2 0 88 2 0 52 0 1 65 22 24 24 5 6 120 41 49 51 chain 137957 chr1 249250621 + 46323283 46324830 L1PA5 6144 - 9 1548 26488 242 14 2 1017 0 4 274 chain 24010 chr1 249250621 + 46338154 46338452 AluSp 311 - 14 311 110269 169 2 1 127 chain 5762 chr1 249250621 + 46363048 46363137 MER21-int 1364 - 136 224 187527 26 0 1 13 10 8 40 chain 30427 chr1 249250621 + 46366118 46366436 AluYb8 318 - 0 318 83620 318 chain 12411 chr1 249250621 + 46373876 46374016 L1PA7 6471 - 6 146 150592 140 chain 73118 chr1 249250621 + 46392653 46393660 MER11C 1089 - 68 1089 46971 101 1 0 54 0 1 127 1 2 29 14 17 112 1 0 11 36 35 146 1 0 52 0 2 9 4 8 52 7 16 24 2 0 223 chain 20968 chr1 249250621 + 46395789 46396050 AluSg7 307 - 41 307 124041 23 0 6 31 1 2 72 2 0 132 chain 16989 chr1 249250621 + 46399924 46400130 AluY 311 + 50 255 135616 74 1 0 131 chain 29358 chr1 249250621 + 46413687 46414096 L1PREC2 3366 + 2334 2741 87255 58 13 10 314 8 8 6 0 1 10 chain 6039 chr1 249250621 + 46422730 46422816 Merlin1_HS 166 + 77 161 184903 30 1 0 21 3 2 31 chain 340736 chr1 249250621 + 46427437 46431289 L1PA5 6144 - 0 3895 11882 7 8 0 194 0 1 845 0 8 566 0 1 240 0 2 252 4 9 20 0 41 788 1 0 6 1 0 678 5 0 237 chain 38826 chr1 249250621 + 46479849 46480268 L1PA3long 6157 - 0 419 70981 419 chain 300246 chr1 249250621 + 46480268 46483572 L1PA3long 6157 + 2414 5729 13411 687 0 1 943 5 0 317 0 4 123 0 5 87 2 0 707 0 4 12 0 4 421 chain 23819 chr1 249250621 + 46490518 46491179 THE1B 368 - 12 368 111370 113 29 42 32 1 0 3 316 0 91 1 0 75 chain 122627 chr1 249250621 + 46523039 46524595 THE1B-int 1605 + 0 1600 30186 149 0 5 278 8 35 188 7 8 9 0 1 205 0 7 23 1 4 688 chain 23551 chr1 249250621 + 46552656 46552948 L1PA5 6144 + 5852 6144 112845 34 1 0 99 1 2 157 chain 28546 chr1 249250621 + 46567652 46567956 AluYf4 310 - 6 310 90985 304 chain 26497 chr1 249250621 + 46652328 46652633 AluYf4 310 - 6 310 98054 5 3 0 23 0 2 274 chain 23508 chr1 249250621 + 46704547 46704878 THE1B 368 - 26 368 113089 150 2 0 20 4 3 57 9 8 45 0 15 44 chain 134707 chr1 249250621 + 46706176 46708620 SVA_F 1814 + 335 1814 27075 553 323 0 56 81 18 76 583 0 132 1 0 17 1 0 611 0 6 10 chain 10993 chr1 249250621 + 46706730 46706920 SVA_F 1814 + 888 1046 92578 4 0 1 23 48 0 32 3 18 80 chain 2351 chr1 249250621 + 46706776 46706805 SVA_F 1814 + 937 1107 153585 10 1 142 18 chain 2377 chr1 249250621 + 46706920 46706987 SVA_F 1814 + 686 872 198702 19 2 122 28 1 0 17 chain 5093 chr1 249250621 + 46706995 46707052 SVA_F 1814 + 881 937 75589 15 1 0 41 chain 7238 chr1 249250621 + 46707108 46707189 SVA_F 1814 + 1008 1089 75589 81 chain 11348 chr1 249250621 + 46707265 46707392 SVA_F 1814 + 1165 1291 75589 109 1 0 17 chain 24891 chr1 249250621 + 46707413 46707681 SVA_F 1814 + 1009 1274 105403 161 2 0 17 1 0 87 chain 8687 chr1 249250621 + 46707711 46707809 SVA_F 1814 + 888 1001 167268 59 0 15 39 chain 3120 chr1 249250621 + 46707815 46707848 SVA_F 1814 + 1181 1214 166690 33 chain 11548 chr1 249250621 + 46727372 46727517 MER4C 627 - 10 159 154112 24 0 4 121 chain 3036 chr1 249250621 + 46733642 46733716 L1MB3 1562 - 1 76 224279 28 13 11 14 2 5 17 chain 27919 chr1 249250621 + 46776461 46776761 AluYb8 318 + 4 303 93280 205 1 0 94 chain 17045 chr1 249250621 + 46776951 46777198 AluY 311 + 0 231 135471 47 19 1 60 0 1 12 4 6 36 2 1 67 chain 78905 chr1 249250621 + 46785967 46786935 LTR5_Hs 974 + 0 974 44108 279 2 7 490 14 10 33 8 15 37 2 0 103 chain 36852 chr1 249250621 + 46791219 46791705 LTR2B 499 - 0 491 73731 182 2 0 10 0 1 176 0 19 40 12 0 57 1 0 6 chain 231767 chr1 249250621 + 46791711 46796356 Harlequin-int 5206 - 0 5081 17215 24 6 3 228 8 8 341 45 44 37 1 2 4 1 0 176 217 215 184 6 5 45 459 464 27 1 3 12 4 3 74 1 5 62 0 3 101 2 0 234 20 15 139 0 6 66 6 7 172 0 1 25 1 11 198 7 4 293 6 12 288 0 778 195 800 440 29 0 1 74 3 0 23 chain 61057 chr1 249250621 + 46795434 46796187 LTR5_Hs 974 + 219 974 52305 69 0 1 487 12 8 34 0 6 6 0 1 40 2 0 103 chain 35319 chr1 249250621 + 46797740 46798220 LTR2B 499 - 0 492 75772 29 1 0 153 1 0 8 5 6 173 0 19 40 9 0 53 0 3 8 chain 7881 chr1 249250621 + 46799946 46800043 MER66C 541 + 438 536 171806 93 0 1 4 chain 26119 chr1 249250621 + 46802672 46802960 AluYf4 310 + 26 310 99534 4 1 0 5 3 0 275 chain 23833 chr1 249250621 + 46803335 46803605 AluYk4 311 + 26 296 111295 270 chain 6406 chr1 249250621 + 46805140 46805218 Charlie1a 1436 + 540 617 181984 7 1 0 70 chain 24247 chr1 249250621 + 46816756 46817029 AluSp 311 + 1 275 108956 137 0 1 136 chain 3776 chr1 249250621 + 46846340 46846385 MIR 256 - 113 159 210716 36 0 1 9 chain 35880 chr1 249250621 + 46849433 46849925 LTR10F 562 - 0 559 75032 62 5 2 243 23 6 13 2 5 31 1 85 112 chain 80570 chr1 249250621 + 46850305 46851353 HERVIP10FH-int 2884 - 1681 2735 43360 105 0 1 571 0 1 60 0 2 28 1 4 4 1 0 26 1 2 52 0 1 11 1 2 125 3 0 59 chain 27872 chr1 249250621 + 46851453 46851776 LTR17 781 - 457 781 93448 119 0 1 204 chain 355104 chr1 249250621 + 46852090 46856463 HERV17-int 4347 - 2 4067 11471 184 3 6 398 7 0 7 0 7 596 1 0 753 2 3 780 315 0 142 0 1 433 0 2 294 1 0 69 1 2 72 0 1 315 chain 42222 chr1 249250621 + 46856493 46856991 LTR17 781 - 0 522 66373 31 0 22 348 4 7 46 1 0 68 chain 33377 chr1 249250621 + 46859175 46859646 LTR10F 562 - 0 562 78606 18 6 1 43 4 2 89 1 0 66 3 4 96 11 109 134 chain 6610 chr1 249250621 + 46867027 46867100 LTR12C 1709 + 1636 1709 180380 73 chain 25829 chr1 249250621 + 46892510 46892815 AluSp 311 - 6 311 100750 5 3 0 206 0 3 91 chain 3818 chr1 249250621 + 46938870 46938953 MIR 256 + 109 192 210112 15 27 27 41 chain 85127 chr1 249250621 + 46969699 46970619 L1PA3long 6157 - 812 1732 41472 920 chain 74713 chr1 249250621 + 46970619 46971432 L1PA3long 6157 + 5344 6157 45981 813 chain 27567 chr1 249250621 + 47054197 47054496 AluYf4 310 + 0 297 94446 266 2 0 31 chain 10500 chr1 249250621 + 47068232 47068433 MER30 238 + 2 238 158250 21 20 38 31 1 3 12 4 0 7 2 24 49 6 3 48 chain 22431 chr1 249250621 + 47116089 47116404 L1MA5 2750 + 2331 2646 118334 5 0 1 39 0 1 6 1 0 179 1 0 53 19 19 12 chain 63102 chr1 249250621 + 47116674 47117363 L1PA3long 6157 - 1 690 51398 689 chain 29437 chr1 249250621 + 47117363 47117682 L1PA3long 6157 + 5156 5475 86919 319 chain 31700 chr1 249250621 + 47120233 47120604 L1PA6 6164 - 14 389 81327 37 0 4 334 chain 81641 chr1 249250621 + 47128455 47129370 L1PA4 6152 - 0 919 42912 846 1 5 68 chain 122832 chr1 249250621 + 47159535 47160903 L1PA5 6144 + 4767 6144 30104 110 0 1 594 0 1 526 0 7 138 chain 4763 chr1 249250621 + 47176085 47176145 L1MA5A 2387 - 97 157 197780 60 chain 529569 chr1 249250621 + 47193715 47200327 L1PA7 6471 + 0 6465 4237 258 14 20 124 7 0 7 3 0 94 8 12 99 0 1 277 0 1 317 0 4 345 3 4 430 0 3 38 0 1 125 0 4 24 1 0 130 5 4 215 0 26 69 23 0 31 0 2 38 8 0 393 0 4 290 174 0 139 1 0 20 16 20 169 12 0 270 0 2 449 0 1 100 4 5 104 0 8 557 0 1 677 3 10 319 0 2 222 chain 12513 chr1 249250621 + 47197106 47197248 L1PA6 6164 + 6020 6162 150193 142 chain 70833 chr1 249250621 + 47203337 47204364 Tigger1 2417 - 943 1995 47998 53 4 5 124 3 0 31 0 12 34 1 2 43 5 9 44 7 6 146 0 3 266 3 6 37 41 52 142 6 0 37 chain 51869 chr1 249250621 + 47218826 47219443 L1PA7 6471 - 12 627 57701 171 2 1 154 1 0 289 chain 34922 chr1 249250621 + 47220327 47220814 LTR10D 510 + 0 509 76307 59 0 1 14 1 2 5 0 5 9 0 1 115 4 16 4 1 0 31 0 1 45 5 0 6 2 7 51 5 6 31 0 1 99 chain 56111 chr1 249250621 + 47221002 47221664 PABL_B 668 + 0 668 55062 73 0 5 200 1 0 6 0 1 80 0 1 302 chain 75154 chr1 249250621 + 47222183 47223054 MER11D 897 + 0 897 45946 576 1 24 233 5 6 17 0 2 39 chain 37859 chr1 249250621 + 47236863 47237342 MER4A1 472 + 0 472 72331 230 18 11 231 chain 99468 chr1 249250621 + 47238778 47240432 MER4-int 2692 + 329 1766 36909 210 0 9 31 0 7 38 5 54 40 10 0 60 0 13 74 1 2 259 0 1 27 21 41 22 316 0 40 0 12 141 8 0 8 0 8 33 1 0 130 2 0 177 chain 29466 chr1 249250621 + 47239586 47239892 AluYb8 318 - 12 318 86774 306 chain 7083 chr1 249250621 + 47240470 47241402 MER4-int 2692 - 1445 2377 46815 26 0 3 91 0 1 10 14 6 332 6 5 54 4 5 92 10 13 141 0 1 152 chain 366374 chr1 249250621 + 47241452 47248485 L1PB1 5432 - 8 4830 11202 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 15 22 12 4 1 0 16 1 0 18 9 10 15 8 7 9 2 1 53 2 0 9 638 45 10 1 0 51 1 0 5 3 4 348 1 2 60 4 0 290 1588 0 151 0 1 778 1 0 571 2 1 253 1 0 95 0 1 137 9 10 667 0 5 265 3 0 6 8 0 7 1 0 154 12 12 186 0 3 276 0 2 160 chain 133050 chr1 249250621 + 47243158 47244742 LTR12C 1709 - 0 1709 27412 378 0 1 102 0 4 106 3 1 5 1 0 224 0 1 20 0 118 150 10 1 306 0 13 279 chain 2439 chr1 249250621 + 47249814 47250135 MER4-int 2692 - 2377 2691 46815 92 10 9 99 12 10 6 1 0 63 2 0 25 1 0 10 chain 30763 chr1 249250621 + 47253954 47255411 MER4A1 472 - 0 472 82932 65 8 11 118 10 31 10 30 2 35 982 0 159 0 1 40 chain 274948 chr1 249250621 + 47259279 47262450 L1PA5 6144 - 13 3185 14927 129 0 4 1389 2 1 361 23 16 941 0 2 42 0 3 73 1 0 180 0 1 30 chain 67559 chr1 249250621 + 47262450 47263203 L1PA5 6144 + 2199 2951 49275 385 1 0 367 chain 39534 chr1 249250621 + 47273851 47274272 L1PA2 6032 - 536 957 69978 421 chain 48973 chr1 249250621 + 47274272 47274807 L1PA2 6032 + 5500 6032 59771 527 3 0 5 chain 98770 chr1 249250621 + 47286807 47287896 L1PA4 6152 + 5046 6138 37084 252 0 4 607 1 0 229 chain 508693 chr1 249250621 + 47290811 47296980 L1PA5 6144 - 0 6143 6266 824 7 8 199 0 1 895 4 0 382 0 1 161 7 0 2102 0 3 333 2 0 66 24 15 171 4 5 24 25 0 429 1 2 312 2 1 75 14 28 106 chain 25134 chr1 249250621 + 47301442 47301730 L1PA4 6152 - 722 1013 104099 75 0 3 213 chain 66689 chr1 249250621 + 47301730 47302461 L1PA4 6152 + 5415 6146 49792 731 chain 524349 chr1 249250621 + 47311809 47318290 L1PA5 6144 + 0 6128 4738 33 0 1 76 1 0 695 16 2 11 18 1 350 9 0 646 2 1 34 34 4 142 0 15 1414 0 6 647 2 0 621 314 0 150 0 10 1055 3 4 114 1 0 27 0 3 66 chain 22727 chr1 249250621 + 47334489 47334805 L1PA11 4918 + 3367 3686 116948 53 7 8 106 1 0 5 1 2 126 0 2 17 chain 15600 chr1 249250621 + 47335528 47335705 L1PA4 6152 + 5974 6151 139581 177 chain 250816 chr1 249250621 + 47345052 47347892 L1PA5 6144 + 3296 6144 16194 1058 0 1 123 0 2 389 0 1 1218 0 4 52 chain 72026 chr1 249250621 + 47366360 47367433 MER11A 1151 + 0 1151 47466 79 7 15 102 1 0 31 0 4 58 8 5 22 0 4 221 4 3 124 0 1 4 15 18 11 3 4 25 12 16 32 31 57 6 0 2 17 0 32 97 9 8 87 1 0 66 chain 93291 chr1 249250621 + 47368617 47371680 HERVK11-int 2540 + 686 2227 38566 51 5 0 13 4 7 6 1 0 9 2 0 20 19 11 15 5 0 7 33 10 43 3 0 12 2 1 48 1530 116 9 3 1 30 0 1 25 9 8 48 24 20 18 16 6 5 1 0 27 13 2 35 21 1 428 17 12 55 3 0 49 1 0 59 1 0 131 15 14 63 11 7 118 chain 4736 chr1 249250621 + 47374221 47374276 L1MC1 2226 - 179 234 198095 55 chain 23386 chr1 249250621 + 47379200 47379638 MLT2A2 560 - 0 545 113733 95 61 170 41 59 58 16 1 0 165 chain 466808 chr1 249250621 + 47385364 47391525 L1PA7 6471 - 4 6468 8158 66 0 10 78 11 16 19 0 1 165 0 1 428 0 1 65 0 3 11 9 13 1561 10 9 10 0 1 4 4 1 173 0 262 12 3 4 56 1 0 292 13 1 509 3 1 371 1 0 312 1 2 173 9 5 6 0 4 59 0 1 544 0 4 138 16 8 108 0 4 14 44 28 53 1 31 111 43 47 4 1 0 264 1 0 101 44 60 239 chain 13193 chr1 249250621 + 47405851 47406072 MER30 238 - 2 238 147494 43 4 1 54 1 0 7 4 24 67 17 16 24 chain 2010 chr1 249250621 + 47408990 47409011 L1PA7 6471 + 4438 4459 238519 21 chain 119169 chr1 249250621 + 47409012 47410448 L1PA7 6471 + 4469 5910 31346 508 1 2 6 1 0 295 0 1 333 0 3 76 9 10 207 chain 33235 chr1 249250621 + 47410449 47410833 L1PA7 6471 + 5910 6297 78822 4 0 1 125 0 2 255 chain 13409 chr1 249250621 + 47410849 47411001 L1PA7 6471 + 6314 6466 146676 152 chain 8258 chr1 249250621 + 47413632 47413748 HERV17-int 4347 + 20 132 169636 7 1 0 50 2 1 34 2 0 20 chain 27100 chr1 249250621 + 47416022 47416322 AluYa5 310 - 10 310 95941 182 1 0 30 1 2 86 chain 305817 chr1 249250621 + 47419805 47423939 HERV17-int 4347 + 13 4347 13176 13 6 5 46 2 1 35 2 0 13 14 13 26 348 564 9 0 33 620 51 5 19 4 3 45 8 9 58 5 6 1230 0 1 1580 chain 27778 chr1 249250621 + 47424254 47424579 LTR17 781 + 0 326 93768 238 1 2 86 chain 4846 chr1 249250621 + 47428199 47428258 L1P2 5180 + 1216 1275 196824 59 chain 239337 chr1 249250621 + 47428262 47431063 L1P1 4361 - 1557 4357 16808 213 2 1 283 1 0 420 0 9 298 0 1 426 0 3 84 0 1 340 0 1 587 14 0 133 chain 7775 chr1 249250621 + 47434669 47435058 MSTB 430 + 14 415 172446 33 23 26 38 169 174 6 1 0 13 55 60 51 chain 517283 chr1 249250621 + 47441649 47447809 L1PA6 6164 + 0 6161 5453 509 2 1 1225 1 2 676 2 1 132 0 3 640 0 1 429 2 1 442 0 1 521 2 0 275 0 1 60 3 0 340 0 1 742 13 14 144 chain 460014 chr1 249250621 + 47451024 47456724 L1PA7 6471 + 787 6470 8398 104 1 5 6 4 0 207 2 0 153 0 3 6 4 1 361 5 7 79 14 0 455 6 11 135 1 2 126 0 1 39 0 1 103 4 0 44 2 0 631 0 2 7 4 2 200 1 0 16 1 0 8 3 4 321 1 2 59 1 2 323 17 0 23 1 0 80 0 3 22 0 1 400 1 0 424 1 0 54 0 3 398 1 0 686 6 0 8 0 7 130 0 7 11 chain 124794 chr1 249250621 + 47458621 47460021 L1PA4 6152 - 16 1419 29452 740 0 3 660 chain 12204 chr1 249250621 + 47465535 47465684 THE1D-int 1627 + 1477 1627 151409 140 0 1 9 chain 26696 chr1 249250621 + 47469672 47470018 MER51B 395 + 41 395 97335 100 0 5 99 1 0 88 1 5 57 chain 523908 chr1 249250621 + 47472127 47478240 L1PA5 6144 + 3 6144 4778 392 0 2 38 14 15 98 0 1 492 1 0 4 8 9 210 9 8 136 1 6 890 1 4 212 0 3 221 0 8 1178 1 2 412 0 4 1464 0 1 331 chain 20016 chr1 249250621 + 47482684 47482960 L1MA2 4263 - 162 429 127091 43 7 0 93 11 9 122 chain 32206 chr1 249250621 + 47483216 47483669 MER4A1 472 + 0 472 80514 15 4 7 203 7 28 36 11 10 11 4 0 162 chain 53664 chr1 249250621 + 47483779 47485255 PABL_A 660 - 0 660 56572 118 1 0 5 0 1 29 1 0 11 815 0 496 chain 9085 chr1 249250621 + 47484606 47484719 PABL_A 660 - 8 121 165143 113 chain 85215 chr1 249250621 + 47508155 47509413 L1PB1 5432 - 11 1210 41447 17 1 0 8 4 5 21 1 0 24 2 0 14 1 0 5 2 0 16 9 0 11 2 0 4 1 0 16 1 0 44 1 0 15 2 1 52 2 0 7 8 4 13 3 2 8 1 0 21 1 0 6 5 4 20 0 1 450 4 0 10 0 1 12 7 11 146 43 7 66 5 10 17 0 1 129 chain 394567 chr1 249250621 + 47518589 47522988 L1PA4 6152 - 0 4400 10300 6 2 0 144 0 1 2062 0 1 1618 1 0 106 0 2 460 chain 263182 chr1 249250621 + 47528417 47532408 L1PBa 3878 + 81 3748 15529 4 1 0 5 2 0 10 2 1 45 65 17 50 1 0 19 0 1 7 2 0 284 1 0 53 2 0 268 1 0 4 1 2 128 8 9 21 0 1 72 0 1 271 308 0 93 0 2 69 0 3 72 23 21 14 1 0 190 0 4 72 0 1 141 12 26 130 0 1 158 2 1 261 12 15 84 0 2 18 2 1 117 1 0 184 10 9 177 3 0 117 0 13 73 1 2 73 16 24 21 9 8 164 2 1 22 2 0 10 chain 255124 chr1 249250621 + 47551367 47554250 L1PA5 6144 - 0 2886 15977 939 0 1 582 1 0 268 0 1 1057 0 1 16 5 6 15 chain 163942 chr1 249250621 + 47579296 47581118 L1PA4 6152 + 4318 6141 22815 546 0 1 1276 chain 178098 chr1 249250621 + 47588619 47590648 L1PA4 6152 - 1 2029 21155 5 2 0 334 1 0 320 0 1 543 0 1 824 chain 177141 chr1 249250621 + 47591146 47593166 L1PA4 6152 + 4119 6141 21237 1181 0 1 25 0 1 814 chain 6360 chr1 249250621 + 47595485 47595573 HERV17-int 4347 - 4215 4300 182318 20 2 0 34 2 1 30 chain 13335 chr1 249250621 + 47596977 47597139 L1PA5 6144 + 5963 6125 146951 162 chain 18079 chr1 249250621 + 47597934 47598203 L1PA16 3655 + 2596 2870 132649 64 29 28 33 0 1 30 0 5 113 chain 161073 chr1 249250621 + 47598225 47601267 L1PA7 6471 - 5 2033 23185 144 25 26 446 1035 0 233 0 3 11 1 0 260 0 7 6 1 0 54 1 0 298 0 1 22 0 1 276 0 1 170 4 5 38 1 10 16 chain 89549 chr1 249250621 + 47598846 47599875 LTR5A 1029 + 0 1029 39796 147 1 0 388 0 1 493 chain 413946 chr1 249250621 + 47619334 47625946 L1PA8 5853 + 50 5853 9702 22 2 0 10 1 0 10 52 16 103 1 31 59 39 27 16 0 4 102 19 11 364 4 21 96 0 1 4 1 0 54 0 1 61 18 23 69 0 4 44 50 52 4 1 0 136 0 1 297 4 5 7 0 1 7 5 3 307 7 0 6 0 1 49 8 1 789 3 2 42 0 1 15 0 4 13 6 268 175 7 6 10 10 9 357 1052 0 293 11 13 138 15 1 153 1 3 4 1 0 611 0 4 16 0 2 76 2 1 7 0 1 468 1 0 46 2 0 69 17 15 48 2 1 16 5 4 92 chain 85304 chr1 249250621 + 47622815 47623767 L1PA3long 6157 + 5186 6142 41418 916 0 4 36 chain 539862 chr1 249250621 + 47631596 47637732 L1PA4 6152 + 1 6152 2833 252 1 0 419 5 11 340 0 1 212 0 1 38 0 1 878 0 1 452 0 1 557 1 0 524 1 0 196 0 1 1205 1 0 163 0 1 881 0 6 10 chain 24467 chr1 249250621 + 47722023 47722311 AluSx4 309 + 11 299 107726 288 chain 78549 chr1 249250621 + 47772986 47774032 MER11C 1089 + 0 1063 44241 247 7 16 50 0 4 42 0 1 26 1 0 177 16 15 112 1 0 4 1 5 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 2844 chr1 249250621 + 47782420 47782462 MER2 342 + 149 188 227945 5 3 0 34 chain 24300 chr1 249250621 + 47792608 47792921 AluSp 311 - 10 310 108656 7 8 0 274 5 0 19 chain 23581 chr1 249250621 + 47801029 47801330 AluSq4 311 + 1 304 112684 130 0 1 128 9 10 34 chain 6087 chr1 249250621 + 47808112 47808199 MLT2B3 573 - 476 573 184525 17 2 11 6 0 1 62 chain 3463 chr1 249250621 + 47823044 47823084 MSTD 398 - 114 154 215931 40 chain 14514 chr1 249250621 + 47826492 47826778 LTR51 675 - 0 295 142842 47 53 59 29 34 35 66 0 2 57 chain 22398 chr1 249250621 + 47851554 47851815 AluSc 308 - 35 297 118490 167 1 2 93 chain 18862 chr1 249250621 + 47852015 47852296 L1PA16 3655 + 3293 3578 130483 120 18 17 61 11 16 71 chain 3198 chr1 249250621 + 47857578 47857616 MLT1E2 623 + 582 621 220984 19 0 1 19 chain 10282 chr1 249250621 + 47859362 47859516 MER41B 635 - 0 154 159226 55 4 0 7 11 15 77 chain 4029 chr1 249250621 + 47884258 47884326 MER5A1 166 + 0 75 206952 6 0 1 17 11 17 34 chain 22852 chr1 249250621 + 47888617 47888901 AluSp 311 + 8 297 116324 34 0 4 82 1 2 167 chain 5559 chr1 249250621 + 47938590 47938662 MIR 256 + 103 183 189486 40 0 8 32 chain 38047 chr1 249250621 + 47970345 47970756 L1PA4 6152 - 6 417 72063 411 chain 125638 chr1 249250621 + 48007573 48009114 THE1B-int 1605 + 18 1605 29205 414 7 32 114 0 11 88 0 9 121 0 1 797 chain 21176 chr1 249250621 + 48009114 48009476 THE1B 368 + 0 368 123288 104 18 19 54 61 66 125 chain 3082 chr1 249250621 + 48028115 48028151 MIRb 242 - 138 174 223295 36 chain 80665 chr1 249250621 + 48067910 48068878 L1P1 4361 + 4 972 43196 968 chain 159142 chr1 249250621 + 48068878 48070711 L1PA5 6144 + 4296 6130 23446 49 3 5 503 0 1 261 1 3 5 1 0 762 3 0 245 chain 29179 chr1 249250621 + 48080011 48080321 AluYa5 310 - 0 310 88150 310 chain 2501 chr1 249250621 + 48115010 48115068 L1MA3 4352 - 6 57 233124 16 7 1 15 2 1 18 chain 18731 chr1 249250621 + 48132952 48133341 MLT1A1 405 + 5 405 130878 31 0 1 11 17 20 44 122 129 164 chain 58979 chr1 249250621 + 48156883 48157627 L1PA7 6471 - 10 716 53410 142 1 0 4 9 8 363 36 0 189 chain 92970 chr1 249250621 + 48205673 48206979 L1PA14 3548 + 2173 3456 38666 313 0 2 47 2 1 153 1 0 151 0 2 78 0 2 16 3 1 14 2 0 48 12 8 105 8 4 13 2 0 6 8 7 77 1 0 111 1 0 11 4 0 36 4 2 6 1 0 11 1 0 17 1 0 22 1 0 19 chain 3149 chr1 249250621 + 48208704 48208763 HAL1-2a_MD 234 - 3 234 221953 11 3 0 22 2 177 21 chain 4273 chr1 249250621 + 48209121 48209295 HAL1-2a_MD 234 - 10 170 203584 34 5 48 16 71 5 15 17 26 16 chain 8551 chr1 249250621 + 48211027 48211143 L1PA8 5853 - 0 123 168010 23 0 9 61 1 0 16 1 0 14 chain 22847 chr1 249250621 + 48239074 48239440 THE1B 368 + 0 368 116360 111 0 3 7 17 15 33 25 23 18 0 4 16 1 0 76 1 0 4 1 2 56 chain 29487 chr1 249250621 + 48339924 48340243 AluYb8 318 - 6 318 86680 55 7 0 257 chain 14709 chr1 249250621 + 48345015 48345204 Tigger3a 397 + 142 326 142245 152 5 0 32 chain 16822 chr1 249250621 + 48389218 48389453 MLT2D 439 + 2 237 136058 84 7 6 51 4 5 89 chain 527479 chr1 249250621 + 48421912 48428029 L1PA5 6144 + 0 6128 4449 135 6 20 1003 20 11 239 1 6 899 2 1 195 1 0 716 1 5 55 1 0 10 0 1 48 3 0 261 0 2 66 3 0 195 1 0 473 0 4 1783 chain 28261 chr1 249250621 + 48486789 48487115 L1PA5 6144 + 5816 6143 92075 315 1 2 10 chain 62834 chr1 249250621 + 48511102 48511799 L1PA4 6152 - 13 710 51522 697 chain 132600 chr1 249250621 + 48560252 48561722 L1PA3long 6157 - 0 1473 27502 146 1 2 700 1 3 622 chain 29664 chr1 249250621 + 48561722 48562046 L1PA3long 6157 + 4367 4691 85988 324 chain 53661 chr1 249250621 + 48565411 48566008 L1PA5 6144 - 2 599 56575 597 chain 205557 chr1 249250621 + 48583816 48586084 L1PA4 6152 - 5 2273 18820 1219 0 1 545 2 0 144 0 1 358 chain 10637 chr1 249250621 + 48590412 48590574 L1P4 1494 + 1251 1410 157663 99 1 0 30 12 10 20 chain 25799 chr1 249250621 + 48598235 48598531 AluYf4 310 - 14 310 100878 296 chain 357038 chr1 249250621 + 48598549 48602834 L1PA7 6471 - 3 4304 11431 249 1 0 49 1 15 189 1 0 341 1 2 440 0 1 480 2 0 864 1 2 230 1 0 83 1 0 511 0 3 376 0 1 383 0 1 81 chain 7946 chr1 249250621 + 48609480 48609571 AluYk4 311 + 203 294 171354 91 chain 559532 chr1 249250621 + 48615797 48621829 L1PA2 6032 + 0 6032 387 6032 chain 504642 chr1 249250621 + 48633118 48639345 L1PA7 6471 - 7 6471 6564 247 0 1 84 0 1 175 0 105 233 1 0 1376 0 1 238 5 0 340 0 2 88 0 3 35 2 1 48 8 14 23 4 0 6 0 4 66 0 11 445 0 1 266 0 1 15 0 2 97 0 1 337 12 0 212 0 1 79 0 13 403 7 104 72 0 1 454 2 3 445 1 2 255 13 18 103 0 2 30 chain 64816 chr1 249250621 + 48640027 48640795 SVA_B 1603 + 840 1603 50651 12 1 0 12 1 0 112 1 0 621 2 0 6 chain 126531 chr1 249250621 + 48657441 48658978 SVA_F 1814 + 0 1472 28934 833 63 14 8 1 0 43 79 0 50 0 15 126 0 49 334 chain 6087 chr1 249250621 + 48658390 48658468 SVA_F 1814 + 1011 1089 86988 78 chain 30502 chr1 249250621 + 48674685 48675084 LTR7 482 - 12 482 83423 180 0 32 33 0 1 109 6 44 71 chain 290942 chr1 249250621 + 48676345 48680081 HERVH-int 3825 - 0 3825 13966 225 0 2 152 3 0 7 0 3 106 2 212 37 9 11 720 0 4 405 11 0 225 4 31 215 1 0 12 0 2 25 9 0 90 8 15 102 15 0 110 26 2 333 1 0 64 4 24 35 24 0 18 30 6 14 1 0 14 70 0 24 1 0 10 2 1 37 5 0 240 0 2 290 chain 29255 chr1 249250621 + 48680095 48680493 LTR7 482 - 12 482 87761 142 0 1 37 0 1 24 9 41 109 6 44 71 chain 49546 chr1 249250621 + 48730055 48730640 L1PA7 6471 - 13 600 59359 142 0 1 221 0 1 222 chain 134993 chr1 249250621 + 48739020 48742779 L1PA7 6471 - 4 3838 8750 23 0 1 119 5 7 23 1 0 163 1 0 404 7 5 97 0 1 32 1 3 130 7 8 269 0 1 199 1 2 809 0 4 7 5 1 9 52 31 42 19 47 201 3 2 162 3 0 11 0 1 142 4 0 5 0 3 53 0 4 208 0 1 72 2 3 68 1 2 106 0 1 95 0 4 166 0 1 21 0 54 11 chain 547180 chr1 249250621 + 48742866 48749015 L1PA3long 6157 + 4 6157 1810 1042 1 0 54 8 9 529 0 1 1569 0 1 6 7 6 1426 0 1 607 1 0 71 0 1 153 0 2 675 chain 78180 chr1 249250621 + 48749392 48751569 L1PA7 6471 - 4295 6471 8750 440 3 5 533 4 6 188 0 1 21 0 1 256 9 10 303 11 0 80 3 4 69 0 1 59 0 1 198 chain 225058 chr1 249250621 + 48754042 48756828 L1P2 5180 + 3 2802 17590 109 21 7 31 2 1 97 2 1 259 1 0 7 1 0 167 0 1 104 1 0 6 1 0 134 0 25 204 0 3 243 1 0 339 0 2 368 0 3 688 chain 23378 chr1 249250621 + 48764914 48765212 AluSp 311 + 11 306 113768 109 1 0 162 2 0 24 chain 522671 chr1 249250621 + 48777260 48783360 L1PA4 6152 + 6 6152 4898 442 0 3 214 12 11 77 0 19 643 1 6 19 3 1 853 0 4 988 1 0 116 0 1 279 0 1 95 0 1 161 0 1 403 0 4 64 16 17 58 0 3 476 0 1 331 0 4 200 0 1 221 0 1 427 chain 108098 chr1 249250621 + 48787909 48789249 L1PA7 6471 + 5128 6469 34687 493 2 0 389 0 2 124 1 2 215 9 6 5 0 3 102 chain 26184 chr1 249250621 + 48817663 48818019 THE1B 368 - 0 368 99262 75 1 0 125 1 0 46 4 3 60 0 15 44 chain 541619 chr1 249250621 + 48829475 48835599 L1PA3long 6157 - 0 6157 2572 843 0 4 946 0 4 66 0 2 713 3 0 123 0 2 1388 0 1 347 1 2 649 0 1 183 0 2 169 1 8 109 0 12 583 chain 24491 chr1 249250621 + 48837373 48837727 THE1A 353 - 0 353 107590 83 23 0 8 6 29 123 1 0 110 chain 126130 chr1 249250621 + 48837727 48839275 THE1A-int 1579 - 0 1579 29056 436 0 1 22 0 2 87 0 1 44 0 16 225 0 1 117 1 0 346 0 11 270 chain 26569 chr1 249250621 + 48844111 48844466 THE1A 353 - 0 353 97764 151 1 0 91 13 12 99 chain 13815 chr1 249250621 + 48844722 48845072 THE1C 375 - 20 375 145196 27 0 1 85 62 69 34 79 69 16 0 9 32 2 0 13 chain 172621 chr1 249250621 + 48847384 48849997 SVA_E 1901 - 13 1901 21750 135 6 0 738 1 0 36 7 13 39 4 0 110 719 0 672 1 0 145 chain 11440 chr1 249250621 + 48848460 48848608 SVA_E 1901 - 912 1084 128303 30 2 1 31 1 0 4 17 43 63 chain 33147 chr1 249250621 + 48848661 48849105 SVA_F 1814 - 540 1126 78990 68 49 0 35 0 1 205 7 28 32 0 169 48 chain 3884 chr1 249250621 + 48848729 48848778 SVA_F 1814 - 784 833 108456 49 chain 27370 chr1 249250621 + 48852619 48852976 THE1B 368 - 0 368 95049 74 1 0 102 2 0 24 1 0 109 0 15 44 chain 17815 chr1 249250621 + 48876239 48876580 THE1D 372 - 37 372 133353 19 1 2 65 75 77 104 23 14 54 chain 31348 chr1 249250621 + 48890479 48891029 L1MA1 4479 - 289 811 81899 18 7 0 8 2 0 13 1 0 8 3 1 37 3 1 26 1 0 121 16 12 82 6 5 12 2 0 20 1 0 56 0 1 12 22 18 24 1 0 20 1 0 27 chain 26472 chr1 249250621 + 48900873 48901365 LTR12 884 + 0 387 98158 23 2 1 52 25 0 17 0 2 68 0 2 37 0 3 5 1 0 131 50 9 12 42 0 16 2 0 9 chain 4007 chr1 249250621 + 48901234 48901284 LTR12 884 + 209 259 121628 50 chain 3366 chr1 249250621 + 48901296 48901338 LTR12 884 + 271 313 121628 42 chain 325691 chr1 249250621 + 48903954 48908140 HERV9-int 5642 + 1 4824 12357 599 2 0 116 6 0 79 1 0 219 1 0 88 242 0 9 1 0 90 47 0 96 1 0 370 0 2 639 0 1 701 7 942 872 chain 5109 chr1 249250621 + 48905148 48905224 HERV9-int 5642 + 1026 1102 193989 4 1 0 58 1 2 12 chain 45308 chr1 249250621 + 48909771 48910518 LTR12 884 + 5 873 62709 19 1 0 27 0 41 137 153 0 110 0 1 38 2 0 186 1 0 24 0 236 49 chain 8340 chr1 249250621 + 48909961 48910070 LTR12 884 + 237 346 156433 109 chain 1709 chr1 249250621 + 48910070 48910108 LTR12 884 + 123 163 139009 36 0 2 2 chain 46152 chr1 249250621 + 48926772 48927276 L1PA3long 6157 - 761 1265 61893 504 chain 67751 chr1 249250621 + 48927277 48928026 L1PA3long 6157 + 5408 6157 49347 749 chain 119702 chr1 249250621 + 48940474 48942027 THE1A-int 1579 + 0 1573 31146 24 2 3 80 0 3 59 9 9 472 0 1 4 15 17 168 0 1 147 1 0 251 1 0 214 0 14 106 chain 7531 chr1 249250621 + 48942033 48942261 THE1A 353 + 0 228 110071 47 0 1 48 1 0 13 0 2 8 17 15 94 chain 28233 chr1 249250621 + 48942267 48942601 L1PA7 6471 + 6138 6467 92178 267 3 0 53 2 0 9 chain 4988 chr1 249250621 + 48942610 48942761 THE1A 353 + 228 353 110071 11 0 1 15 27 0 98 chain 137540 chr1 249250621 + 48944380 48945916 SVA_D 2077 + 7 2071 26554 6 1 0 18 5 4 507 0 40 335 0 137 140 0 351 258 0 2 266 chain 27523 chr1 249250621 + 48967396 48967792 MLT2A1 477 - 81 477 94595 11 3 2 111 8 10 48 9 10 24 0 1 10 5 2 167 chain 45071 chr1 249250621 + 48978916 48979417 MER9a1 513 - 0 500 62970 322 1 0 178 chain 395179 chr1 249250621 + 48979435 48984106 HERVK9-int 4720 - 0 4684 10274 108 0 4 163 0 1 1340 0 1 607 0 6 229 0 1 108 6 9 556 0 2 283 0 1 407 2 3 731 1 0 28 2 1 7 1 0 66 1 0 4 8 5 13 chain 45107 chr1 249250621 + 48985415 48985928 MER9a1 513 - 0 513 62925 513 chain 91794 chr1 249250621 + 49007516 49008581 L1PA7 6471 - 3 1070 39033 11 1 0 833 0 3 220 chain 13434 chr1 249250621 + 49063963 49064139 Tigger3b 1229 - 0 175 146559 136 1 0 39 chain 17671 chr1 249250621 + 49245717 49245942 L1PA7 6471 - 17 234 133770 132 8 0 85 chain 10859 chr1 249250621 + 49248445 49248749 L1MC1 2226 - 30 301 156749 13 1 0 30 129 105 56 2 0 12 3 0 50 3 0 5 chain 221002 chr1 249250621 + 49262910 49266392 L1PB1 5432 - 6 3184 17819 4 1 0 21 1 0 8 1 0 23 1 0 24 62 45 21 2 1 43 1 0 17 1 0 49 4 2 9 2 0 3 2 0 12 3 2 29 7 0 6 258 4 20 4 0 6 12 16 45 0 2 44 1 0 265 0 2 73 4 1 173 40 0 5 0 1 18 5 11 77 2 0 131 4 0 123 8 7 56 0 2 253 0 23 27 1 2 364 2 1 118 4 5 25 3 0 365 2 0 7 0 1 12 11 10 115 6 7 184 2 0 5 0 3 28 0 5 217 chain 48686 chr1 249250621 + 49278269 49278793 L1PA4 6152 + 5628 6152 59967 524 chain 43284 chr1 249250621 + 49280187 49280895 L1MA5A 2387 - 81 810 65072 11 2 1 64 5 31 12 13 0 32 2 0 48 8 7 25 22 21 21 1 0 42 25 33 223 0 1 19 7 9 94 0 3 32 chain 3392 chr1 249250621 + 49288366 49288411 MLT2B4 540 + 338 432 217263 23 0 49 22 chain 20310 chr1 249250621 + 49302973 49303319 MLT2A2 560 + 0 480 126205 68 0 14 86 12 10 15 26 34 67 10 119 43 1 6 18 chain 47996 chr1 249250621 + 49345663 49346392 L1PB1 5432 - 14 709 60493 14 1 0 13 1 0 21 1 0 24 2 0 15 7 4 30 19 6 11 1 0 43 1 0 15 3 2 53 2 0 9 5 1 10 1 0 13 1 0 20 5 0 9 1 4 378 chain 29751 chr1 249250621 + 49358040 49358472 MER4A1 472 - 32 450 85647 36 24 11 145 15 13 23 7 8 182 chain 4855 chr1 249250621 + 49358500 49358557 MER4-int 2692 - 0 57 196731 57 chain 21274 chr1 249250621 + 49367525 49367857 THE1B 368 - 12 368 122948 113 11 19 10 15 17 25 10 9 99 5 20 44 chain 16465 chr1 249250621 + 49391089 49391304 MER30 238 + 11 238 137027 97 3 0 9 3 21 54 3 0 46 chain 63935 chr1 249250621 + 49447887 49448620 L1PA4 6152 - 18 746 51037 128 1 2 106 1 0 81 5 0 411 chain 546352 chr1 249250621 + 49471690 49477708 L1PA3long 6157 + 4 6152 1903 148 0 1 618 7 135 1273 0 1 3972 chain 3900 chr1 249250621 + 49490193 49490238 MIR 256 + 83 128 208838 45 chain 110587 chr1 249250621 + 49524266 49525759 THE1C-int 1605 + 15 1596 34056 29 1 2 5 0 12 47 0 54 163 0 6 26 0 1 69 16 23 48 7 6 88 0 1 78 1 0 17 0 8 8 6 0 35 1 2 9 6 0 385 0 4 58 13 11 82 17 13 33 0 13 245 chain 20194 chr1 249250621 + 49533433 49533671 L1PA6 6164 - 2 240 126545 238 chain 496221 chr1 249250621 + 49533913 49540195 L1PA6 6164 - 3 6161 7056 11 0 5 656 3 0 5 0 3 591 0 1 9 0 1 37 2 1 7 1 0 643 0 1 640 12 0 10 0 1 349 0 1 827 0 1 31 1 2 248 0 1 37 0 1 595 3 1 426 1 0 195 0 17 66 21 0 172 18 0 4 58 0 32 0 1 21 0 5 32 43 24 69 1 0 12 40 12 149 0 1 204 chain 23058 chr1 249250621 + 49544944 49545322 THE1D 372 - 0 372 115366 125 3 9 12 40 38 13 6 15 84 19 0 76 chain 119761 chr1 249250621 + 49548357 49549981 THE1B-int 1605 - 9 1605 31132 604 1 0 264 11 16 104 0 26 131 37 21 34 0 7 232 1 3 42 51 0 112 chain 3038 chr1 249250621 + 49549828 49549860 THE1B-int 1605 - 1449 1481 224267 32 chain 21265 chr1 249250621 + 49560075 49560319 L1PA4 6152 - 2218 2462 122979 244 chain 197477 chr1 249250621 + 49560320 49562522 L1PA4 6152 + 3950 6152 19391 201 0 3 637 4 0 502 0 1 858 chain 508986 chr1 249250621 + 49581897 49588016 L1PA6 6164 - 3 6164 6243 156 1 0 685 0 2 952 0 4 459 0 19 148 0 1 545 0 1 586 20 39 230 0 1 118 0 2 87 0 3 245 26 6 154 10 0 786 1 2 23 0 4 79 0 17 240 1 0 400 0 5 8 14 9 145 chain 6659 chr1 249250621 + 49592978 49593097 L1PB1 5432 + 5311 5422 180011 16 2 0 5 2 1 15 2 0 22 1 0 21 1 0 13 1 0 18 chain 140903 chr1 249250621 + 49594987 49596528 L1PA3long 6157 - 0 1542 26009 856 0 1 685 chain 60207 chr1 249250621 + 49598335 49599072 L1PA8 5853 + 5118 5853 52724 402 0 1 41 1 0 46 2 0 70 2 1 15 1 0 46 0 3 17 2 1 92 chain 44874 chr1 249250621 + 49601051 49601564 MER9a1 513 - 0 513 63203 218 1 0 145 0 1 149 chain 17156 chr1 249250621 + 49611367 49611640 L1MA2 4263 + 3848 4111 135147 108 11 9 89 20 13 38 1 0 6 chain 318695 chr1 249250621 + 49622760 49627181 L1PA7 6471 - 3 6471 12641 199 0 2 130 0 1 206 0 1 135 0 1 172 1 0 145 300 2316 422 0 2 74 0 2 27 0 1 169 0 1 465 0 2 143 2 0 52 0 1 319 6 7 117 25 24 14 3 4 30 4 7 182 1 17 49 7 5 122 4 0 6 10 14 479 1 0 13 57 58 249 0 2 81 chain 26648 chr1 249250621 + 49623748 49624048 L1PA7 6471 + 5204 5507 96888 28 0 3 272 chain 26830 chr1 249250621 + 49645561 49645868 AluSp 311 - 0 310 96872 217 0 3 90 chain 21613 chr1 249250621 + 49702666 49702954 AluY 311 + 21 300 121715 112 18 11 145 2 0 11 chain 96527 chr1 249250621 + 49719066 49720509 L1PA13 3608 + 2090 3522 37684 209 0 3 108 0 5 186 11 12 149 6 5 144 56 58 100 5 6 53 1 0 33 1 0 113 2 0 62 1 0 26 3 2 32 2 0 47 9 5 18 1 0 22 24 16 14 1 0 4 chain 55637 chr1 249250621 + 49722850 49723488 L1PA3long 6157 - 5513 6154 55242 313 1 0 75 0 4 249 chain 499148 chr1 249250621 + 49723488 49728982 L1PA3long 6157 + 645 6152 6888 256 0 7 4201 3 8 363 0 1 671 chain 534221 chr1 249250621 + 49748179 49754048 L1PA2 6032 + 0 6031 3685 932 0 2 724 3 0 917 0 3 554 1 0 26 0 1 143 0 159 261 0 1 2308 chain 113748 chr1 249250621 + 49778566 49779907 L1PA7 6471 - 19 1367 33164 827 1 4 18 0 4 495 chain 60391 chr1 249250621 + 49779909 49780657 L1PA7 6471 - 4 754 52636 136 3 0 5 0 3 7 17 18 160 0 1 420 chain 57052 chr1 249250621 + 49780661 49781314 L1PA7 6471 + 5041 5711 54498 108 0 14 458 0 3 87 chain 7242 chr1 249250621 + 49809915 49809996 L1PA2 6032 + 5951 6032 175816 81 chain 29179 chr1 249250621 + 49815864 49816174 AluYa5 310 - 0 310 88149 310 chain 4153 chr1 249250621 + 49836576 49836621 MLT2C2 476 + 137 182 205212 45 chain 39165 chr1 249250621 + 49845158 49845585 L1PA3long 6157 - 2108 2535 70521 427 chain 35425 chr1 249250621 + 49845585 49845976 L1PA3long 6157 + 4057 4448 75273 391 chain 138476 chr1 249250621 + 49845980 49847524 L1PA3long 6157 + 4459 6008 26397 1535 0 5 9 chain 13419 chr1 249250621 + 49847529 49847678 L1PA3long 6157 + 6008 6157 146637 149 chain 3862 chr1 249250621 + 49861357 49861399 MER1A 529 + 471 513 209417 42 chain 41711 chr1 249250621 + 49874073 49874623 MLT2A2 560 + 0 560 67015 168 13 12 223 1 12 145 chain 55512 chr1 249250621 + 49893123 49893814 LTR12 884 - 0 884 55408 173 1 103 163 0 1 48 0 22 31 0 66 52 1 3 222 chain 45397 chr1 249250621 + 49897517 49898148 PABL_A 660 + 0 657 62600 80 18 16 120 0 45 290 32 19 23 8 5 55 1 0 4 chain 30790 chr1 249250621 + 49905176 49905616 MLT2A1 477 + 0 477 82880 168 5 2 157 0 12 38 19 51 7 4 0 42 chain 145484 chr1 249250621 + 49905616 49907731 HERVL-int 5654 + 0 4301 25258 103 3 2 18 308 0 296 0 2 411 0 1 4 8 0 652 0 2500 312 chain 45101 chr1 249250621 + 49927168 49927731 L1PA7 6471 - 2 589 62932 41 2 27 90 5 4 425 chain 56669 chr1 249250621 + 49950669 49951290 L1PA4 6152 + 5531 6152 54740 621 chain 27019 chr1 249250621 + 49958496 49958867 THE1C 375 - 0 375 96219 26 1 0 162 5 6 42 5 9 130 chain 59414 chr1 249250621 + 49959957 49960621 L1PA3long 6157 - 8 676 53166 157 0 1 496 0 3 11 chain 4601 chr1 249250621 + 49964084 49964151 L1MA8 2339 - 280 346 199603 49 2 1 16 chain 13184 chr1 249250621 + 49969660 49970037 THE1D 372 + 0 370 147532 12 0 2 18 1 0 6 7 3 10 51 43 42 92 98 101 14 12 23 chain 82547 chr1 249250621 + 49975830 49976719 L1PA2 6032 - 577 1466 42519 889 chain 51562 chr1 249250621 + 49976719 49977286 L1PA2 6032 + 5461 6028 57914 567 chain 33183 chr1 249250621 + 49979625 49979988 L1PA4 6152 - 1735 2098 78315 363 chain 154775 chr1 249250621 + 49979988 49981710 L1PA4 6152 + 4419 6141 24005 1722 chain 11841 chr1 249250621 + 49995967 49996108 L1PA4 6152 - 0 144 152863 13 0 3 128 chain 13719 chr1 249250621 + 50007472 50007784 LTR12C 1709 + 784 1033 145543 53 1 0 11 119 0 61 3 18 4 0 1 37 0 41 23 chain 377821 chr1 249250621 + 50011583 50017313 L1PB1 5432 - 19 5314 10821 9 2 1 12 1 0 21 1 0 5 1 2 4 1 0 13 2 0 11 11 8 18 17 15 12 11 1 44 1 0 16 2 1 40 0 3 10 7 0 9 27 20 24 1 0 8 156 24 30 1 0 5 0 1 170 0 7 65 1 0 182 5 6 154 0 1 128 0 1 338 6 5 63 0 1 83 7 17 93 9 10 15 309 0 41 10 11 259 0 7 11 0 20 404 1 0 15 4 3 27 0 1 88 0 4 130 26 4 54 16 18 25 0 3 63 3 13 7 1 0 52 2 1 835 5 10 183 24 11 5 2 0 7 1 0 486 1 4 62 0 1 113 0 1 4 1 0 113 22 29 39 1 0 46 0 1 4 1 0 87 5 4 283 chain 60236 chr1 249250621 + 50020318 50021082 LTR12D 1347 - 0 909 52715 195 0 1 34 0 97 162 3 4 34 7 5 104 0 17 126 2 33 97 chain 6674 chr1 249250621 + 50021170 50021267 LTR12D 1347 + 456 662 179877 67 1 110 29 chain 77439 chr1 249250621 + 50021293 50022187 L1PA5 6144 + 5222 6141 44760 76 0 4 628 4 6 103 0 19 83 chain 542967 chr1 249250621 + 50027005 50033119 L1PA4 6152 - 21 6150 2349 34 0 4 1856 0 1 977 0 3 863 1 2 52 0 1 136 0 2 492 0 3 472 0 1 170 0 2 366 0 1 207 4 0 484 chain 10848 chr1 249250621 + 50038253 50038393 L1P3 4156 - 418 560 156790 8 0 2 132 chain 453681 chr1 249250621 + 50038903 50044502 HERVL-int 5654 + 0 5654 8632 113 0 1 63 0 1 272 1 3 109 0 1 274 0 1 32 10 15 57 12 17 164 1 0 476 0 4 17 0 5 284 2 1 146 0 5 62 0 1 132 1 0 21 1 2 317 0 1 273 10 11 423 2 1 192 0 1 28 0 10 1256 0 1 432 1 0 53 0 13 326 6 7 30 chain 19452 chr1 249250621 + 50057166 50057627 L1PREC2 3366 + 2627 3048 128814 18 1 2 103 2 0 38 19 18 43 8 4 12 34 26 9 2 0 5 4 1 19 6 4 22 4 1 11 22 8 24 17 15 38 chain 56198 chr1 249250621 + 50060035 50060765 L1PA8 5853 - 4 720 55020 66 1 0 23 1 0 19 2 1 24 0 1 22 19 14 69 2 0 46 1 0 221 4 0 210 chain 234748 chr1 249250621 + 50063398 50067128 L1P2 5180 - 730 3853 17045 82 3 6 325 5 8 45 587 0 295 2 0 402 17 6 78 4 5 14 0 1 275 0 3 236 2 1 249 0 1 130 4 5 363 0 18 8 0 1 13 41 1 62 0 2 51 6 7 165 3 4 148 21 19 94 chain 47927 chr1 249250621 + 50063863 50064445 L1P1 4361 - 3195 3770 60407 341 16 19 6 3 0 99 7 0 110 chain 110938 chr1 249250621 + 50067128 50068499 L1PA7 6471 + 5063 6462 33909 60 5 0 8 3 8 326 0 1 148 0 3 22 0 1 69 2 6 295 0 2 295 4 2 47 15 34 72 chain 40831 chr1 249250621 + 50083538 50084050 L1PA7 6471 - 11 525 68129 350 0 2 5 2 0 91 0 2 64 chain 184848 chr1 249250621 + 50084050 50086274 L1PA7 6471 + 3718 5944 20513 111 0 1 179 7 4 193 1 2 23 0 1 787 2 1 579 0 4 18 1 0 18 0 1 70 1 0 234 chain 51768 chr1 249250621 + 50086794 50087383 LTR10C 591 - 0 591 57776 79 0 2 510 chain 57865 chr1 249250621 + 50099749 50100445 L1PA7 6471 - 12 709 54054 145 9 10 542 chain 33532 chr1 249250621 + 50102500 50102937 MLT2A1 477 + 7 477 78346 161 5 2 215 6 0 8 4 46 38 chain 108137 chr1 249250621 + 50119866 50121142 L1PA5 6144 - 3272 4536 34569 329 0 1 335 1 2 206 12 0 110 2 0 281 chain 282457 chr1 249250621 + 50121142 50124691 L1PA5 6144 + 2897 6144 14508 265 3 4 78 0 3 38 306 0 1715 5 6 975 1 6 5 4 0 4 2 0 148 chain 61357 chr1 249250621 + 50124720 50125563 L1PA10 4194 + 1316 2207 52170 15 0 1 315 0 2 49 0 12 69 6 7 110 4 19 52 15 30 130 4 6 74 chain 91752 chr1 249250621 + 50154047 50155503 L1MA2 4263 - 149 1596 39049 10 1 0 46 7 0 17 1 2 74 13 11 34 0 2 48 21 24 40 3 0 144 1 0 77 6 2 17 7 11 46 2 0 20 17 18 191 49 50 116 4 3 34 0 1 170 0 4 133 1 2 36 11 10 24 15 10 20 chain 31489 chr1 249250621 + 50157271 50157666 MLT2A1 477 + 0 392 81660 109 1 0 59 5 2 9 0 1 24 0 1 180 1 0 7 chain 5009 chr1 249250621 + 50171141 50171199 L1P2 5180 - 954 1012 195028 58 chain 12430 chr1 249250621 + 50175149 50175332 L1PA7 6471 + 5368 5517 150530 55 34 0 94 chain 24273 chr1 249250621 + 50175335 50175648 L1PA7 6471 + 5531 5845 108825 90 1 0 112 8 9 14 0 1 88 chain 51662 chr1 249250621 + 50175648 50176271 L1PA7 6471 + 5846 6470 57854 290 0 1 160 1 2 167 1 0 4 chain 128075 chr1 249250621 + 50180643 50182190 L1PA7 6471 - 6 1565 28552 6 2 0 150 1 2 380 0 1 80 0 1 43 0 5 125 0 3 57 6 10 647 1 0 49 chain 64728 chr1 249250621 + 50182198 50183003 L1PA7 6471 + 4057 4935 50686 182 11 11 237 0 1 225 0 72 150 chain 35967 chr1 249250621 + 50186630 50187123 LTR12F 595 + 0 595 74935 55 8 10 38 11 112 27 1 0 353 chain 522685 chr1 249250621 + 50203518 50209728 L1PA4 6152 + 13 6143 4895 85 87 0 209 49 50 608 6 7 6 1 0 728 0 3 415 0 3 903 8 9 125 2 1 398 0 1 1432 0 1 205 1 0 696 1 0 245 chain 113192 chr1 249250621 + 50213680 50215058 L1PA7 6471 - 5 1380 33319 33 9 0 355 0 1 218 0 3 129 0 1 105 1 0 301 1 0 52 0 1 35 4 6 135 chain 287339 chr1 249250621 + 50215859 50219925 L1P2 5180 - 114 4212 14200 63 0 1 38 2 1 58 0 4 197 34 35 34 0 2 172 22 0 8 4 27 88 10 11 240 7 12 176 0 2 206 1 2 210 2 5 44 6 7 47 1 0 84 6 8 24 8 5 21 7 11 450 47 52 135 3 6 115 8 6 136 3 4 205 0 1 140 15 14 167 0 1 252 1 0 4 0 1 461 56 57 48 chain 22992 chr1 249250621 + 50225784 50226063 L1PA8A 6298 - 769 1052 114863 15 0 1 22 0 3 242 chain 59198 chr1 249250621 + 50226063 50226802 L1PA8A 6298 + 5551 6291 53285 89 3 2 366 0 1 181 4 5 96 chain 13427 chr1 249250621 + 50254838 50255021 L1P3 4156 - 17 197 146592 24 2 1 7 2 0 148 chain 65997 chr1 249250621 + 50266036 50266745 L1PA2 6032 - 0 709 50101 709 chain 9092 chr1 249250621 + 50266745 50266846 L1PA2 6032 + 5240 5340 165109 28 1 0 72 chain 75497 chr1 249250621 + 50267650 50268532 MER11D 897 + 0 897 45770 273 12 8 293 0 23 236 5 1 63 chain 18495 chr1 249250621 + 50274829 50275051 L1PA5 6144 - 2 226 131509 13 3 0 142 0 5 64 chain 19495 chr1 249250621 + 50279485 50279778 THE1B 368 + 0 297 128667 169 1 0 21 7 10 14 0 4 6 20 18 55 chain 31089 chr1 249250621 + 50280991 50281515 L1MA2 4263 - 150 668 82365 5 0 3 35 0 1 4 29 22 75 12 10 92 10 11 26 0 3 17 22 18 129 2 1 66 chain 460920 chr1 249250621 + 50295296 50303035 L1PA7 6471 - 7 5817 8364 40 1 0 57 0 3 5 3 0 50 1 0 24 0 1 186 0 1 284 6 8 102 1 0 85 8 16 1009 8 7 53 1 0 133 9 10 177 0 2 118 1984 9 247 0 1 329 0 8 76 16 18 30 0 1 475 1 2 264 4 5 502 6 0 187 0 1 33 0 1 150 0 1 60 0 1 533 1 2 127 31 55 129 1 0 192 chain 179677 chr1 249250621 + 50297670 50299635 L1PA3long 6157 - 0 1970 21021 849 0 4 602 0 1 514 chain 6554 chr1 249250621 + 50327237 50327345 L1M1 2793 - 1676 1785 180819 8 3 0 69 6 10 22 chain 21909 chr1 249250621 + 50333022 50333264 L1PA5 6144 - 9 251 120588 242 chain 55032 chr1 249250621 + 50333264 50334007 L1PA10 4194 + 1301 4141 55690 68 0 1 78 0 1 4 1 0 194 0 2 36 0 2100 263 1 0 28 1 0 36 8 4 25 chain 5753 chr1 249250621 + 50340496 50340783 L1PA3long 6157 - 0 283 23439 6 3 0 247 1 0 30 chain 553695 chr1 249250621 + 50340840 50346847 L1PA2 6032 - 13 6021 982 5311 0 1 696 chain 31929 chr1 249250621 + 50346847 50348440 L1PA3long 6157 - 285 1880 23439 167 0 2 1426 chain 532097 chr1 249250621 + 50380780 50386910 L1PA5 6144 + 3 6132 3949 551 1 0 146 5 6 1156 1 2 25 2 0 350 6 8 917 6 5 501 0 3 274 1 0 333 3 0 1011 1 0 437 8 9 395 chain 54441 chr1 249250621 + 50387941 50388770 L1PA13 3608 + 2685 3488 56071 214 1 2 120 17 8 103 1 0 28 1 0 115 2 0 54 11 10 11 3 0 12 4 3 26 9 5 48 8 4 19 1 0 21 chain 538403 chr1 249250621 + 50400522 50406533 L1PA3long 6157 + 6 6157 3087 736 1 0 1160 2 0 1104 6 1 647 0 1 318 0 144 890 0 2 548 1 2 598 chain 380677 chr1 249250621 + 50409933 50416216 L1PB1 5432 + 12 5420 10732 7 1 0 151 31 22 111 0 1 57 3 4 20 1 2 17 3 2 96 44 43 7 3 0 304 0 1 50 3 2 316 5 6 166 2 0 5 6 18 151 2 9 14 12 8 94 1 4 205 0 3 17 14 11 153 1 2 6 1 0 46 1 2 227 19 23 105 3 0 326 10 21 146 1 0 4 0 1 197 0 2 124 2 1 136 0 1 263 657 13 317 11 3 118 0 6 112 25 0 175 0 1 13 13 18 30 5 11 87 3 0 125 11 12 52 0 3 254 297 90 5 2 0 53 7 6 11 2 1 29 4 0 10 45 31 19 13 10 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 101805 chr1 249250621 + 50422916 50424068 L1P2 5180 - 2409 3562 36318 15 0 1 427 1 0 67 0 1 642 chain 38705 chr1 249250621 + 50424068 50424525 L1PA5 6144 + 5686 6144 71144 303 1 2 153 chain 12733 chr1 249250621 + 50425279 50425560 L1PA15 4387 + 4087 4353 149321 13 14 13 14 20 21 36 2 1 21 4 0 11 1 0 50 7 4 43 3 1 11 7 3 24 chain 30206 chr1 249250621 + 50432583 50432930 L1PA7 6471 - 406 752 84175 163 3 1 107 0 1 74 chain 33294 chr1 249250621 + 50432930 50433321 L1PA7 6471 + 6055 6466 78736 366 0 20 25 chain 9538 chr1 249250621 + 50438023 50438167 L1PB4 2604 - 37 179 162895 15 1 0 61 7 6 60 chain 29071 chr1 249250621 + 50444851 50445154 AluYb8 318 + 0 303 88680 303 chain 4093 chr1 249250621 + 50448508 50448554 MER52A 1651 + 795 841 206043 46 chain 2678 chr1 249250621 + 50459791 50459831 L1MC5 759 + 451 490 230451 17 2 0 5 0 1 16 chain 46008 chr1 249250621 + 50475998 50476900 L1MA1 4479 + 3403 4190 62036 65 0 1 50 2 0 12 45 26 17 1 0 7 5 1 15 0 1 13 0 1 103 1 0 24 2 0 16 1 0 74 1 0 16 17 14 88 30 26 10 0 1 89 6 5 29 80 10 25 1 0 9 1 0 11 18 10 18 chain 43230 chr1 249250621 + 50481342 50481951 L1PA15 4387 + 3204 3821 65136 26 21 11 242 0 19 67 12 13 231 2 0 8 chain 15394 chr1 249250621 + 50522055 50522313 Tigger3b 1229 + 47 305 140219 40 33 16 10 6 23 169 chain 23396 chr1 249250621 + 50522326 50522616 AluY 311 + 0 297 113666 70 0 3 53 0 2 147 0 2 20 chain 81038 chr1 249250621 + 50547354 50548298 L1PA7 6471 - 6 950 43173 7 3 0 137 2 1 604 0 5 90 1 0 100 chain 6937 chr1 249250621 + 50619622 50619700 MLT1B 390 + 280 358 177910 78 chain 29223 chr1 249250621 + 50631505 50631879 MLT2A1 477 - 82 477 87943 10 4 0 214 1 5 24 1 2 22 0 20 98 chain 220552 chr1 249250621 + 50631880 50634571 HERVL-int 5654 - 1 5654 17844 222 0 1 106 0 48 8 0 1 449 0 1 211 0 1 63 1 0 430 0 16 170 0 1 381 25 2918 62 0 1 563 chain 29227 chr1 249250621 + 50634676 50635059 MLT2A1 477 - 93 477 87927 153 8 4 54 1 5 25 0 1 142 chain 4203 chr1 249250621 + 50699044 50699153 MER5C1 258 + 105 247 204505 19 7 39 36 29 30 18 chain 250978 chr1 249250621 + 50706174 50709057 L1PA5 6144 - 2 2892 16182 628 0 1 135 0 1 531 3 7 865 0 1 721 chain 49978 chr1 249250621 + 50756963 50757555 L1PA6 6164 + 5569 6162 59030 58 0 1 534 chain 101887 chr1 249250621 + 50820913 50822219 Tigger1 2417 + 1083 2391 36288 760 0 1 8 0 1 403 1 0 52 0 1 82 chain 283012 chr1 249250621 + 50826326 50829826 L1PA10 4194 + 688 4161 14470 207 12 2 361 16 5 208 0 1 361 1 0 830 0 5 7 9 13 9 0 3 115 13 1 375 0 1 665 3 0 259 3 0 34 1 0 11 chain 4239 chr1 249250621 + 50834876 50835039 HAL1-2a_MD 234 - 7 142 204041 28 102 74 33 chain 216156 chr1 249250621 + 50839552 50842708 L1PB1 5432 + 2372 5423 18106 49 0 5 77 0 1 85 0 4 30 25 24 41 0 13 124 16 17 89 0 4 77 0 7 713 1 0 116 8 20 94 0 1 29 11 10 235 1 0 134 7 8 129 26 6 107 3 0 183 1 0 125 5 6 27 3 0 141 92 0 11 1 0 24 1 0 6 1 0 13 6 2 9 2 0 6 0 1 45 2 1 15 1 0 45 1 0 11 56 41 13 2 0 24 1 0 22 1 0 12 1 0 8 1 0 11 chain 139874 chr1 249250621 + 50846650 50848245 SVA_D 2077 + 0 2077 26161 550 0 40 97 0 40 181 0 136 216 0 262 454 0 4 97 chain 5243 chr1 249250621 + 50849854 50849971 L1MA9 1812 - 1459 1579 192586 20 32 34 15 3 4 47 chain 17901 chr1 249250621 + 50850553 50850927 L1MA6 2487 - 109 418 133094 38 89 43 6 1 0 14 2 0 45 21 5 158 chain 62338 chr1 249250621 + 50856109 50856972 L1PA13 3608 - 120 973 51740 22 1 0 15 5 3 5 2 0 47 2 0 5 1 0 56 11 10 52 2 0 113 1 0 32 1 0 168 13 12 51 0 4 258 chain 77948 chr1 249250621 + 50867119 50868095 L1PA13 3608 + 2425 3391 44549 10 3 0 699 2 0 26 1 0 113 2 0 59 16 15 9 1 0 35 chain 8487 chr1 249250621 + 50876309 50876430 L1MB8 1703 + 1234 1389 168365 31 0 1 9 0 1 11 8 40 62 chain 5205 chr1 249250621 + 50940110 50940186 L1PB1 5432 - 10 86 192978 15 1 3 13 1 0 21 1 0 24 chain 23287 chr1 249250621 + 50950532 50950787 L1PA5 6144 + 5889 6144 114272 255 chain 29434 chr1 249250621 + 50961082 50961512 L1MA2 4263 - 152 571 86923 6 1 0 36 17 12 92 15 13 147 3 0 113 chain 24132 chr1 249250621 + 50963212 50963517 AluSg7 307 - 1 305 109577 94 9 8 202 chain 135536 chr1 249250621 + 50976932 50978541 L1PA7 6471 - 5 1634 26918 25 0 9 121 2 0 321 0 3 285 0 2 76 0 3 42 0 1 93 1 0 263 0 5 13 0 1 155 1 0 211 chain 11536 chr1 249250621 + 50990858 50991019 L1PA13 3608 - 226 385 154164 17 2 3 26 1 0 63 2 0 50 chain 35683 chr1 249250621 + 51020990 51021569 L1PB3 3668 + 2859 3478 75294 23 0 33 16 0 13 44 2 0 17 3 0 77 5 7 46 0 3 26 10 2 35 24 25 55 12 11 49 0 4 43 4 3 49 1 0 38 chain 5372 chr1 249250621 + 51084258 51084350 L1PA16 3655 - 3554 3643 191289 38 2 0 32 6 5 14 chain 19670 chr1 249250621 + 51096500 51096750 AluSg7 307 - 5 296 128199 24 0 4 45 0 25 77 0 1 42 0 11 62 chain 24276 chr1 249250621 + 51106501 51106791 AluSc 308 - 6 296 108797 290 chain 4277 chr1 249250621 + 51144930 51144984 MER41B 635 + 479 534 203509 29 0 1 25 chain 22956 chr1 249250621 + 51153532 51153815 AluY 311 + 7 290 115820 125 0 1 106 2 1 50 chain 55977 chr1 249250621 + 51182110 51182838 LTR12 884 + 0 884 55135 25 1 0 52 2 1 211 0 2 6 3 1 32 0 47 171 0 103 97 0 8 128 chain 35063 chr1 249250621 + 51193288 51193786 MLT2A2 560 + 0 560 76098 33 0 13 9 15 9 125 26 82 139 3 1 5 0 1 143 chain 26670 chr1 249250621 + 51220356 51220708 THE1B 368 - 0 368 97425 159 7 9 26 1 0 119 0 15 40 chain 120621 chr1 249250621 + 51220713 51222275 THE1B-int 1605 - 5 1605 30835 37 1 2 76 0 6 112 0 1 4 1 0 14 4 5 296 7 8 501 0 1 81 1 26 90 0 1 323 1 3 13 chain 25687 chr1 249250621 + 51222275 51222625 THE1B 368 - 0 368 101346 56 2 0 10 0 1 101 2 0 26 1 0 103 6 27 19 2 3 22 chain 82906 chr1 249250621 + 51224828 51225748 L1PA3long 6157 - 4 923 42376 151 1 0 768 chain 259509 chr1 249250621 + 51225767 51228620 L1PA3long 6157 + 2401 5255 15731 2567 0 1 286 chain 104433 chr1 249250621 + 51235740 51237288 L1PA15 4387 + 2486 4013 35632 86 1 0 28 0 1 36 0 1 11 4 0 281 8 9 66 1 0 4 10 11 35 0 3 107 4 3 66 8 0 96 5 10 70 0 3 11 0 1 338 33 14 36 6 8 6 4 0 32 52 50 24 1 0 68 0 2 10 chain 9163 chr1 249250621 + 51251824 51252029 L1MB1 2102 + 1794 1996 164743 63 17 15 40 48 46 31 0 1 6 chain 5650 chr1 249250621 + 51286665 51286742 MADE1 96 + 3 96 188565 39 1 17 37 chain 67076 chr1 249250621 + 51292545 51293294 SVA_A 1864 + 1095 1841 49626 48 1 0 65 2 0 633 chain 28496 chr1 249250621 + 51297538 51297945 MER1A 529 + 116 529 91197 281 1 4 53 34 37 38 chain 79026 chr1 249250621 + 51328204 51329265 L1PB1 5432 + 1451 2543 44045 160 0 5 56 6 5 127 0 2 9 7 19 10 4 5 46 0 13 356 0 3 8 7 4 221 1 0 43 chain 73679 chr1 249250621 + 51329275 51330100 L1P1 4361 - 618 1442 46447 68 1 0 756 chain 130489 chr1 249250621 + 51330100 51331520 L1PA3long 6157 + 4734 6157 27967 573 0 3 847 chain 23286 chr1 249250621 + 51337502 51337765 AluY 311 + 47 311 114275 85 0 1 178 chain 6022 chr1 249250621 + 51346244 51346383 MLT1A 405 + 224 365 185039 39 34 36 15 1 2 21 5 4 24 chain 523610 chr1 249250621 + 51352065 51358157 L1PA5 6144 - 13 6144 4801 659 1 0 176 1 5 308 1 0 634 0 2 163 0 1 285 5 17 1498 1 5 707 0 2 431 0 1 42 3 0 5 0 3 94 29 26 117 0 4 797 0 14 135 chain 13060 chr1 249250621 + 51368277 51368542 MER2 342 - 13 305 147992 12 0 1 17 6 4 13 19 21 124 1 0 5 39 66 29 chain 522338 chr1 249250621 + 51370564 51376681 L1PA5 6144 - 4 6144 4927 454 0 2 235 0 3 148 1 5 1790 0 1 269 0 8 28 4 5 22 1 0 864 2 0 1136 9 0 128 0 1 374 3 0 336 0 1 4 0 3 189 1 15 119 chain 72807 chr1 249250621 + 51383863 51384638 L1HS 6032 - 0 775 47122 775 chain 21995 chr1 249250621 + 51397020 51397675 THE1A 353 - 0 304 120254 151 1 0 82 364 14 57 chain 121332 chr1 249250621 + 51397817 51399328 THE1A-int 1579 - 0 1535 30586 490 0 1 399 4 9 28 0 1 78 0 11 69 1 0 6 5 13 195 1 0 235 chain 115034 chr1 249250621 + 51417758 51419072 SVA_B 1603 + 0 1594 32780 13 16 0 8 8 0 7 1 25 144 1 0 435 0 40 114 0 241 567 chain 106946 chr1 249250621 + 51462812 51465546 L1MA2 4263 + 2421 4218 34991 111 0 1 111 1 0 7 317 0 51 11 10 62 0 15 24 0 3 86 0 1 32 0 1 16 13 12 103 1 0 149 0 1 104 1 2 36 1 0 166 1 0 49 1 0 10 4 1 26 630 29 12 5 10 147 3 0 65 15 114 70 7 0 45 209 85 16 4 2 12 chain 24044 chr1 249250621 + 51464312 51464602 AluSg7 307 + 6 296 110092 31 0 1 94 2 0 79 0 1 84 chain 303978 chr1 249250621 + 51470611 51474208 L1P3 4156 + 0 3601 13243 236 11 25 59 1 0 758 0 2 256 1 0 441 0 1 349 0 1 279 0 1 230 9 4 472 0 1 68 2 1 15 8 0 402 chain 24174 chr1 249250621 + 51481485 51481790 AluSp 311 + 0 301 109351 205 8 5 67 1 0 24 chain 149795 chr1 249250621 + 51488768 51490468 L1PA6 6164 - 14 1723 24647 641 0 1 255 0 8 804 chain 10650 chr1 249250621 + 51495399 51495560 L1PA16 3655 - 569 731 157606 4 0 1 60 3 0 39 13 15 20 0 1 22 chain 5168 chr1 249250621 + 51509103 51509165 L1MC4 1079 + 702 764 193363 62 chain 24208 chr1 249250621 + 51518483 51518773 AluSp 311 - 8 298 109163 290 chain 3770 chr1 249250621 + 51522206 51522255 L1M4c 1769 - 28 76 210809 11 1 0 37 chain 121580 chr1 249250621 + 51531927 51533459 THE1B-int 1605 - 5 1576 30513 1133 0 2 8 0 25 80 0 1 195 5 16 111 chain 14026 chr1 249250621 + 51563571 51563843 L1MA5A 2387 + 2069 2305 144478 38 1 0 40 11 9 16 14 12 31 3 0 16 27 0 64 1 0 10 chain 6155 chr1 249250621 + 51566877 51566955 LTR45C 530 + 452 530 183941 78 chain 14598 chr1 249250621 + 51583055 51583401 L1MC1 2226 - 43 355 142598 31 1 0 16 18 14 16 10 8 15 47 36 55 2 0 14 3 0 5 0 1 23 1 0 35 1 0 24 16 6 13 chain 233066 chr1 249250621 + 51598102 51601975 L1PA13 3608 + 92 3362 17140 17 6 4 19 17 14 15 3 2 12 3 0 26 28 17 71 9 7 29 16 51 31 29 25 13 2 0 16 6 2 16 1 0 21 3 1 15 2 0 16 1 0 98 3 1 134 0 2 133 19 21 65 8 10 56 0 1 53 3 2 364 284 0 325 0 1 100 7 0 46 26 19 34 3 5 49 0 1 96 8 11 461 308 0 514 1 0 25 1 0 115 2 0 58 4 3 27 chain 48605 chr1 249250621 + 51626928 51629395 L1PB 1623 + 192 1453 60032 77 7 6 114 1092 478 97 0 1 44 10 15 117 659 65 99 2 0 141 1 0 7 chain 6009 chr1 249250621 + 51637473 51637545 L1P3 4156 + 3085 3157 185143 72 chain 52018 chr1 249250621 + 51643589 51644282 LTR12D 1347 + 403 1347 57614 133 1 32 131 1 18 113 25 28 69 0 200 220 chain 39378 chr1 249250621 + 51660586 51665994 Tigger1 2417 - 187 2227 70205 20 4 0 55 0 7 38 3 0 17 189 0 28 18 19 167 13 7 50 3757 1206 47 12 16 53 6 8 30 655 25 86 4 6 8 0 1 37 13 13 16 14 13 60 1 0 7 chain 42993 chr1 249250621 + 51687370 51688390 LTR8 732 + 11 732 65424 4 0 1 16 0 9 52 34 8 41 317 0 14 0 6 150 16 44 127 0 1 43 60 59 146 chain 12566 chr1 249250621 + 51692646 51692793 HERV17-int 4347 + 890 1037 149988 147 chain 183447 chr1 249250621 + 51693307 51695528 HERV17-int 4347 + 12 4347 20635 15 1 0 50 4 5 31 2 0 26 1 0 193 5 435 81 11 28 275 0 2 194 2 0 121 1 2 375 0 2 206 7 1679 211 24 19 385 chain 5160 chr1 249250621 + 51717789 51717984 Tigger2b_Pri 1066 + 879 995 193453 11 79 0 33 29 29 43 chain 3790 chr1 249250621 + 51799658 51799703 MIRb 242 + 95 140 210518 45 chain 17963 chr1 249250621 + 51824371 51824665 AluSz 310 - 1 300 132953 47 73 75 12 0 3 162 chain 3797 chr1 249250621 + 51836219 51836273 Tigger3b 1229 + 255 307 210436 40 2 0 12 chain 19303 chr1 249250621 + 51842366 51842645 Tigger1 2417 + 1318 1583 129232 21 2 1 7 0 1 68 1 0 6 18 5 156 chain 7467 chr1 249250621 + 51849813 51849944 L1MB3 1562 + 6 132 174359 15 1 0 31 17 12 55 2 3 10 chain 446244 chr1 249250621 + 51852119 51857139 L1PA4 6152 + 807 6151 8868 202 3 310 1840 0 4 8 1 0 1180 0 4 364 2 3 579 0 1 263 0 1 565 0 6 6 0 1 7 chain 4389 chr1 249250621 + 51861980 51862064 Tigger4a 237 - 13 96 202097 22 7 14 9 8 0 38 chain 56929 chr1 249250621 + 51877357 51878046 L1PA8 5853 + 5172 5853 54576 392 1 0 46 2 0 47 1 0 25 1 0 9 1 0 52 1 0 17 1 0 93 chain 18150 chr1 249250621 + 51923128 51923480 Tigger4b 360 - 21 360 132459 25 12 18 14 49 18 69 8 9 43 1 0 11 5 16 33 1 0 4 0 1 15 0 1 62 chain 391527 chr1 249250621 + 51940361 51945255 L1PA5 6144 - 6 5124 10404 645 7 10 60 1 0 4 0 1 400 1 0 360 23 1 35 1 0 51 0 2 140 311 559 37 0 1 426 0 1 1091 2 1 647 1 0 271 0 4 220 9 0 151 chain 27357 chr1 249250621 + 51942091 51942398 L1P1 4361 - 939 1246 95088 307 chain 23783 chr1 249250621 + 51963379 51963663 AluSc 308 + 11 295 111573 284 chain 9911 chr1 249250621 + 52022542 52022786 L1MA3 4352 + 4119 4352 161010 33 20 21 14 0 1 7 2 1 10 11 12 17 5 1 24 2 0 22 8 6 29 1 0 11 6 2 22 chain 24282 chr1 249250621 + 52023686 52023967 AluY 311 + 16 298 108756 116 0 1 165 chain 23389 chr1 249250621 + 52027779 52028194 MSTA 426 + 0 426 113704 133 2 0 5 5 12 30 10 9 38 48 53 20 29 31 95 chain 3948 chr1 249250621 + 52095280 52095329 LTR48B 642 - 49 97 208160 5 1 0 43 chain 23829 chr1 249250621 + 52130828 52131115 AluSp 311 - 24 311 111315 287 chain 503 chr1 249250621 + 52140407 52140441 Tigger3a 397 + 158 192 184414 34 chain 12308 chr1 249250621 + 52140492 52140657 MER30 238 - 11 198 150983 68 0 6 26 4 20 67 chain 1318 chr1 249250621 + 52140730 52140819 Tigger3a 397 + 264 363 184414 38 25 35 26 chain 6305 chr1 249250621 + 52147257 52147343 L1MA8 2339 + 1703 1788 182748 13 1 0 72 chain 23453 chr1 249250621 + 52148855 52149140 AluSp 311 - 15 300 113362 285 chain 3389 chr1 249250621 + 52149968 52150062 L1MA8 2339 + 2170 2256 217297 26 6 0 13 26 24 23 chain 24899 chr1 249250621 + 52157258 52157646 Tigger3b 1229 - 486 886 105351 15 1 0 84 15 21 38 0 2 10 32 37 193 chain 250277 chr1 249250621 + 52167331 52170157 L1PA4 6152 - 12 2847 16230 6 1 0 826 0 4 226 0 1 284 0 2 576 9 11 36 0 1 163 0 4 538 4 0 157 chain 125592 chr1 249250621 + 52176716 52178073 SVA_F 1814 - 342 1814 29217 258 0 49 153 0 64 66 0 2 880 chain 4771 chr1 249250621 + 52220800 52220860 MLT1B 390 + 330 390 197675 60 chain 41006 chr1 249250621 + 52244874 52245446 L1PB1 5432 + 4114 4685 67892 50 0 4 217 0 2 49 7 13 59 3 7 114 18 1 55 chain 8502 chr1 249250621 + 52248685 52248819 MER2 342 - 63 196 168276 31 10 8 32 3 4 58 chain 15685 chr1 249250621 + 52264872 52265074 L1PA6 6164 - 2 203 139313 82 1 0 65 1 0 38 1 2 14 chain 2229 chr1 249250621 + 52312182 52312209 LTR12C 1709 - 294 321 236222 27 chain 19891 chr1 249250621 + 52312291 52312856 LTR12C 1709 - 168 1033 127516 24 226 486 21 42 83 90 1 0 137 10 10 14 chain 1096 chr1 249250621 + 52312930 52312961 LTR12C 1709 - 905 936 149898 31 chain 23082 chr1 249250621 + 52313869 52314156 AluY 311 + 4 286 115226 129 12 7 146 chain 4148 chr1 249250621 + 52331318 52331380 HY3 101 + 14 101 205259 24 1 26 37 chain 161195 chr1 249250621 + 52358978 52360942 L1PA8 5853 + 3882 5847 23166 322 0 4 99 0 1 26 1 0 37 1 0 413 0 1 225 2 0 190 0 3 276 0 1 84 1 0 41 22 20 51 2 3 9 1 0 52 2 1 24 1 0 82 chain 24557 chr1 249250621 + 52364490 52364958 MER6A 605 - 20 496 107209 22 42 44 18 0 7 28 1 2 6 0 3 20 1 0 29 5 0 47 2 0 60 16 18 21 28 30 5 1 0 116 chain 29921 chr1 249250621 + 52384643 52384954 AluYb8 318 - 7 318 85040 311 chain 21022 chr1 249250621 + 52408465 52408773 Tigger1 2417 + 110 427 123842 148 36 43 52 0 2 72 chain 7096 chr1 249250621 + 52439091 52439171 5S 121 + 10 90 176784 80 chain 3600 chr1 249250621 + 52440051 52440135 MER5A 189 - 71 155 213642 5 1 0 13 26 27 39 chain 32492 chr1 249250621 + 52471237 52471687 LTR61 567 + 97 567 80040 17 0 1 30 5 7 43 3 0 30 4 0 141 0 25 116 1 0 8 1 2 9 5 4 37 chain 11411 chr1 249250621 + 52471710 52471867 MER83 447 + 0 149 154637 39 0 1 93 9 0 16 chain 3982 chr1 249250621 + 52471870 52471915 LTR8 732 - 0 45 207650 45 chain 75198 chr1 249250621 + 52471916 52472883 LTR5_Hs 974 + 0 974 45925 225 0 1 63 0 1 177 0 1 103 0 1 4 1 0 80 1 0 163 8 15 19 20 18 103 chain 4630 chr1 249250621 + 52500113 52500262 MER53 195 + 0 168 199299 14 0 10 42 77 86 16 chain 16753 chr1 249250621 + 52503203 52503550 Tigger2 2703 - 1135 1431 136248 37 3 4 162 119 67 26 chain 24651 chr1 249250621 + 52508299 52508591 AluSp 311 - 17 309 106715 292 chain 3512 chr1 249250621 + 52510961 52511002 L1MC2 1988 + 1724 1765 215178 41 chain 4499 chr1 249250621 + 52511540 52511589 MLT1C 463 + 357 406 200793 49 chain 24998 chr1 249250621 + 52524276 52524562 AluSp 311 - 15 302 104803 185 1 2 100 chain 6245 chr1 249250621 + 52564130 52564291 L1MB3 1562 + 1386 1524 183204 22 52 30 17 6 5 64 chain 8343 chr1 249250621 + 52567599 52567761 L1MA3 4352 + 4198 4345 169154 37 4 0 25 2 0 22 1 0 6 4 3 26 20 13 15 chain 13246 chr1 249250621 + 52568123 52568334 L1MB2 1706 - 29 229 147298 9 0 1 56 1 0 13 1 0 16 24 14 91 chain 24386 chr1 249250621 + 52574371 52574645 L1PA4 6152 - 0 268 108157 196 6 0 72 chain 25266 chr1 249250621 + 52602357 52602643 AluSg4 309 + 9 295 103387 286 chain 3164 chr1 249250621 + 52613239 52613294 L1MB7 1623 - 136 187 221666 7 1 0 26 6 3 15 chain 554049 chr1 249250621 + 52636685 52642813 L1PA3long 6157 - 10 6155 943 247 12 14 2715 2 1 1864 0 9 579 0 7 709 chain 148746 chr1 249250621 + 52646719 52648436 SVA_D 2077 + 6 2077 24787 26 6 0 5 1 0 877 7 144 72 0 1 4 3 80 16 0 127 22 0 1 7 0 1 4 5 20 5 0 1 19 0 1 638 chain 64431 chr1 249250621 + 52651958 52652995 L1PREC2 3366 + 2036 3037 50825 109 0 1 74 14 18 42 3 0 76 1 5 23 12 14 92 6 0 262 4 3 95 1 0 5 3 0 5 0 1 6 29 21 11 11 7 15 3 0 30 37 20 38 10 8 20 chain 31566 chr1 249250621 + 52691415 52692689 MER4A1 472 - 11 470 81535 57 859 39 226 0 1 124 0 4 8 chain 28677 chr1 249250621 + 52740942 52741314 L1PA16 3655 - 285 654 90423 79 2 0 86 2 1 203 chain 38593 chr1 249250621 + 52751004 52751519 MER1A 529 + 2 520 71300 70 0 1 326 0 3 41 24 23 54 chain 6820 chr1 249250621 + 52776136 52776226 FLAM_A 137 + 42 130 178795 81 2 0 7 chain 11840 chr1 249250621 + 52798820 52798967 L1PA6 6164 + 6018 6162 152869 62 1 0 76 2 0 6 chain 103808 chr1 249250621 + 52855540 52858368 L1PB2 3958 + 2207 3838 35770 147 0 193 91 5 6 22 9 0 71 0 1 9 2 0 36 0 1 38 1 0 102 1 0 104 422 0 94 316 0 31 0 2 26 1 0 91 0 9 26 2 0 56 1 0 11 5 0 21 321 0 38 7 5 14 11 7 81 2 0 38 307 0 39 1 0 62 1 0 62 3 0 12 2 0 21 2 1 63 chain 3517 chr1 249250621 + 52872494 52872556 MIR 256 - 132 195 215102 21 10 11 31 chain 4728 chr1 249250621 + 52905502 52905620 L1MB7 1623 + 1395 1491 198183 27 1 0 7 17 7 8 7 0 7 4 1 27 1 0 12 chain 9800 chr1 249250621 + 52922183 52922328 L1MC1 2226 + 1888 2027 161593 29 1 0 63 3 0 12 2 0 35 chain 3276 chr1 249250621 + 52929567 52929623 Tigger16b 258 + 69 121 219433 13 3 1 18 2 0 20 chain 4916 chr1 249250621 + 52933121 52933184 L2a 937 + 279 342 196092 63 chain 25711 chr1 249250621 + 52963912 52964215 AluYf4 310 - 9 310 101246 94 1 0 75 1 0 132 chain 16306 chr1 249250621 + 52965807 52966023 L1MB3 1562 + 262 476 137464 164 1 0 41 1 0 9 chain 12725 chr1 249250621 + 52973285 52973462 Tigger4a 237 + 5 237 149353 93 1 47 34 0 1 8 0 7 4 0 1 37 chain 3970 chr1 249250621 + 52983874 52983926 L1MB5 1630 + 1241 1293 207832 52 chain 24661 chr1 249250621 + 53005602 53005905 AluY 311 + 0 297 106664 12 7 1 284 chain 9101 chr1 249250621 + 53025163 53026394 L1MB3 1562 + 954 1552 165064 21 10 9 77 1042 411 38 14 13 29 chain 5777 chr1 249250621 + 53054993 53055069 MER51A 677 + 202 278 187377 76 chain 5029 chr1 249250621 + 53062689 53062852 L2a 937 + 123 268 194837 33 75 60 29 1 0 15 2 0 8 chain 9276 chr1 249250621 + 53064442 53064581 LTR9B 643 - 145 284 164179 27 1 0 24 17 18 70 chain 5365 chr1 249250621 + 53071016 53071139 MER20 218 + 43 178 191366 21 17 34 40 23 18 22 chain 21946 chr1 249250621 + 53085587 53085869 AluSp 311 + 0 287 120437 63 0 1 69 6 10 144 chain 8540 chr1 249250621 + 53085915 53086018 MER30 238 + 138 238 168061 61 3 0 39 chain 22567 chr1 249250621 + 53088399 53088675 AluY 311 + 18 294 117727 105 1 0 11 0 1 159 chain 26567 chr1 249250621 + 53091836 53092203 Tigger1 2417 + 1170 1536 97780 89 0 2 23 8 9 76 4 0 167 chain 17659 chr1 249250621 + 53112838 53113082 MER82 654 - 407 653 133807 42 4 6 37 3 0 33 0 3 125 chain 24694 chr1 249250621 + 53116905 53117208 AluSg7 307 - 5 307 106468 171 1 2 42 2 0 87 chain 22440 chr1 249250621 + 53159877 53160153 AluSp 311 + 29 303 118293 99 3 0 61 0 1 113 chain 21091 chr1 249250621 + 53175782 53176043 AluSg4 309 + 10 274 123576 127 5 8 129 chain 29869 chr1 249250621 + 53186592 53186909 AluYb8 318 - 0 317 85218 317 chain 3777 chr1 249250621 + 53205656 53205729 MIRc 230 - 100 181 210700 23 18 26 32 chain 44888 chr1 249250621 + 53208561 53209087 SVA_C 1631 + 950 1627 63190 68 1 0 246 8 164 186 4 0 13 chain 7566 chr1 249250621 + 53209909 53210069 Tigger3 1187 + 949 1158 173762 14 9 0 15 1 0 54 18 75 8 0 3 11 8 7 22 chain 22063 chr1 249250621 + 53217025 53217320 AluSz 310 + 6 293 119951 191 15 12 78 5 0 6 chain 4812 chr1 249250621 + 53219998 53220049 U2 167 + 1 52 197204 51 chain 3076 chr1 249250621 + 53239723 53239758 MER5B 177 + 100 135 223393 35 chain 19282 chr1 249250621 + 53268469 53268699 AluSc8 310 + 59 292 129283 73 0 3 157 chain 3738 chr1 249250621 + 53274864 53275094 L1MB3 1562 - 10 211 211347 19 137 108 4 1 0 29 19 20 21 chain 52634 chr1 249250621 + 53295861 53296552 MER57-int 2662 - 830 1534 57219 16 0 1 198 0 16 15 11 7 87 1 0 93 1 0 28 0 2 241 chain 24126 chr1 249250621 + 53299002 53299302 AluY 311 + 10 295 109605 116 15 0 169 chain 21260 chr1 249250621 + 53303404 53303686 AluSp 311 + 0 265 122992 33 18 1 231 chain 29117 chr1 249250621 + 53305331 53305635 AluYa5 310 - 6 310 88473 304 chain 4811 chr1 249250621 + 53306460 53306552 MER41-int 2638 + 112 200 197226 53 23 18 12 0 1 4 chain 3170 chr1 249250621 + 53322186 53322230 MIR3 191 - 61 105 221554 13 1 0 20 0 1 10 chain 20266 chr1 249250621 + 53327120 53327377 AluSc 308 + 28 288 126324 93 3 0 149 0 6 12 chain 135369 chr1 249250621 + 53334917 53336580 SVA_D 2077 - 0 2073 26947 611 15 78 48 3 0 20 0 305 29 2 0 23 0 163 251 116 0 545 chain 1681 chr1 249250621 + 53335919 53335970 SVA_D 2077 - 1332 1386 169563 14 10 13 27 chain 8152 chr1 249250621 + 53340552 53340663 Tigger1 2417 + 2245 2358 170218 6 1 0 81 0 3 23 chain 3981 chr1 249250621 + 53348284 53348336 HAL1 992 - 480 532 207664 52 chain 5674 chr1 249250621 + 53368941 53369051 L1PB1 5432 - 2 124 188346 4 1 0 4 1 0 17 1 0 13 1 0 22 1 0 17 10 27 18 chain 3783 chr1 249250621 + 53374230 53374276 L1MB4 1306 + 622 668 210620 46 chain 31091 chr1 249250621 + 53384049 53384514 Tigger3b 1229 + 328 845 82363 57 0 8 91 0 22 46 1 0 6 14 35 100 0 1 33 3 6 36 1 0 4 7 5 30 0 1 36 chain 13080 chr1 249250621 + 53384514 53384862 MER1B 344 + 0 327 147919 22 115 92 84 3 0 65 44 49 15 chain 51365 chr1 249250621 + 53415042 53415630 LTR10C 591 - 0 591 58052 79 1 3 110 0 1 398 chain 2490 chr1 249250621 + 53417949 53418015 L1MB7 1623 - 111 171 233214 13 1 0 7 5 1 9 8 7 23 chain 24670 chr1 249250621 + 53424870 53425163 AluSp 311 - 15 311 106604 262 1 4 30 chain 44491 chr1 249250621 + 53437142 53437732 MER39B 650 - 30 636 63590 25 8 9 77 5 7 43 1 0 235 0 2 176 1 13 19 chain 757 chr1 249250621 + 53470047 53470255 LTR7B 505 + 0 208 109064 208 chain 530868 chr1 249250621 + 53470334 53476454 L1PA5 6144 + 4 6138 4103 131 11 25 505 15 18 341 5 6 4 1 0 41 2 0 5 0 3 86 9 0 66 1 0 871 1 0 456 0 4 598 1 0 1185 0 4 1785 chain 881 chr1 249250621 + 53476457 53476699 LTR7B 505 + 210 505 109064 19 6 61 72 1 0 79 14 13 51 chain 17381 chr1 249250621 + 53506205 53506406 AluY 311 + 95 296 134559 201 chain 23318 chr1 249250621 + 53572016 53572286 AluYc 301 + 9 286 114108 61 0 1 49 0 2 76 0 4 84 chain 7709 chr1 249250621 + 53622206 53622314 MSTA 426 + 289 405 172873 11 0 5 6 3 6 88 chain 24730 chr1 249250621 + 53625659 53625959 AluY 311 + 0 295 106273 64 2 0 67 3 0 164 chain 27760 chr1 249250621 + 53627647 53628013 THE1C 375 + 0 374 93837 46 5 0 17 6 20 266 1 0 25 chain 87509 chr1 249250621 + 53633908 53634921 LTR5A 1029 - 0 1029 40562 866 0 13 31 0 3 116 chain 9550 chr1 249250621 + 53640666 53640854 THE1D 372 - 68 263 162833 13 10 12 24 1 0 44 39 45 57 chain 79011 chr1 249250621 + 53650920 53651879 LTR13_ 950 - 0 950 44057 82 0 2 183 12 8 21 1 3 45 11 0 212 1 0 4 0 1 118 0 2 269 chain 24665 chr1 249250621 + 53670305 53670674 THE1D 372 + 0 372 106640 155 7 8 17 15 16 14 13 14 148 chain 68436 chr1 249250621 + 53670677 53671568 THE1D-int 1627 + 0 913 49071 15 8 10 124 0 3 112 4 5 123 0 7 162 3 0 144 0 12 196 chain 6202 chr1 249250621 + 53684892 53684970 L1MA5A 2387 + 2229 2306 183568 66 1 0 11 chain 3544 chr1 249250621 + 53728695 53728779 LTR33 499 + 407 494 214647 33 30 33 21 chain 2625 chr1 249250621 + 53736517 53736546 MER50C 576 + 526 555 231362 29 chain 4310 chr1 249250621 + 53750032 53750085 MIRb 242 - 110 163 203088 53 chain 5418 chr1 249250621 + 53813243 53813313 THE1B 368 - 68 137 190817 57 2 1 11 chain 90429 chr1 249250621 + 53826214 53827223 LTR13 1007 - 0 1007 39499 81 0 2 5 0 1 181 4 0 433 1 0 304 chain 24468 chr1 249250621 + 53830279 53830570 AluSc 308 + 11 302 107712 291 chain 81841 chr1 249250621 + 53864875 53865839 LTR13A 966 + 3 966 42824 82 1 0 168 0 1 367 1 0 345 chain 8102 chr1 249250621 + 53889896 53889995 LTR49-int 1717 + 1352 1451 170480 99 chain 29751 chr1 249250621 + 53890008 53890434 LTR7B 505 + 0 499 85646 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 46 1 0 23 0 1 24 1 0 20 22 21 45 chain 296283 chr1 249250621 + 53890440 53894004 HERVH-int 3825 + 0 3825 13628 212 0 11 309 5 0 38 2 1 9 1 0 23 0 13 15 7 45 22 2 1 80 1 0 21 2 3 89 0 1 177 13 14 144 15 0 347 0 1 567 0 4 916 16 18 39 0 210 193 0 1 73 0 2 226 chain 29665 chr1 249250621 + 53895271 53895688 LTR7B 505 + 0 490 85978 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 43 1 0 26 0 1 24 1 0 28 14 13 36 chain 10106 chr1 249250621 + 53900975 53901150 MER34B 572 - 28 214 160067 24 5 7 33 10 14 27 8 13 68 chain 30393 chr1 249250621 + 53915087 53915497 LTR7 482 + 0 482 83696 69 8 46 109 0 1 33 0 32 129 13 14 49 chain 19096 chr1 249250621 + 53916231 53916434 L1PA2 6032 + 5829 6032 129825 203 chain 13939 chr1 249250621 + 54062890 54063059 AluY 311 + 127 300 144791 147 4 8 18 chain 2950 chr1 249250621 + 54070656 54070690 MER58A 224 - 144 178 226081 34 chain 3990 chr1 249250621 + 54163472 54163519 MIR 256 - 121 168 207523 47 chain 7561 chr1 249250621 + 54165095 54165310 Tigger4a 237 - 9 237 173802 34 26 34 45 1 0 10 7 0 9 26 63 7 24 0 26 chain 5954 chr1 249250621 + 54210501 54210573 L1MB5 1630 + 979 1051 185644 72 chain 26411 chr1 249250621 + 54223889 54224256 THE1B 368 - 0 368 98371 78 3 0 96 1 3 17 3 2 127 0 5 27 2 0 13 chain 30331 chr1 249250621 + 54225766 54226133 THE1B-int 1605 - 1235 1605 83842 342 0 3 25 chain 3526 chr1 249250621 + 54241940 54241980 Looper 901 - 355 395 214949 40 chain 22918 chr1 249250621 + 54255217 54255490 AluSq2 311 + 11 302 116025 37 1 19 235 chain 401875 chr1 249250621 + 54277498 54283300 L1PB1 5432 + 19 5424 10031 393 2 0 51 1 0 236 11 15 48 20 23 135 0 2 24 2 1 90 1 0 357 38 24 25 18 18 395 1 4 90 0 1 302 321 0 162 1 4 76 9 0 189 3 0 158 1 0 93 0 4 51 7 8 17 1 0 389 0 1 80 2 1 4 0 1 243 0 2 76 7 9 39 0 2 517 2 1 116 30 16 114 4 0 66 34 9 196 0 2 205 0 2 11 3 0 8 8 9 13 16 11 11 3 1 49 1 0 18 1 0 13 0 2 28 1 0 16 24 12 19 11 8 11 2 0 24 1 0 17 8 7 10 1 0 16 1 0 4 chain 12560 chr1 249250621 + 54286066 54286206 L1PA4 6152 + 5998 6138 150007 140 chain 23258 chr1 249250621 + 54297080 54297356 AluSc 308 + 11 291 114394 28 0 1 12 0 3 236 chain 14352 chr1 249250621 + 54302457 54302629 L1MB5 1630 + 458 629 143371 156 1 0 15 chain 26361 chr1 249250621 + 54316353 54316699 THE1A 353 + 0 353 98568 15 2 0 32 0 1 46 1 0 49 0 9 201 chain 146995 chr1 249250621 + 54345626 54347980 L1PA8A 6298 + 4241 6285 25022 62 0 2 51 19 0 44 1 0 169 22 11 29 0 9 126 0 1 80 1 0 391 0 2 6 2 0 10 308 1 254 0 3 53 5 8 33 11 15 377 1 0 169 1 0 8 60 69 61 chain 4469 chr1 249250621 + 54377298 54377353 MIRb 242 - 103 159 201124 41 0 1 14 chain 8094 chr1 249250621 + 54400234 54400362 L1MB8 1703 + 1342 1472 170522 71 9 12 10 1 0 37 chain 26648 chr1 249250621 + 54404478 54404773 AluSp 311 + 13 308 97487 295 chain 5510 chr1 249250621 + 54435040 54435106 Tigger1 2417 - 796 861 189946 35 1 0 30 chain 4445 chr1 249250621 + 54458047 54458097 MER52A 1651 - 812 862 201402 50 chain 119425 chr1 249250621 + 54462430 54463812 L1PA6 6164 + 4773 6162 31255 394 0 5 143 2 0 390 0 2 444 0 2 9 chain 2840 chr1 249250621 + 54469425 54469456 LTR12C 1709 - 991 1022 220815 31 chain 21181 chr1 249250621 + 54469456 54469711 LTR12C 1709 - 744 998 123273 128 1 0 126 chain 22171 chr1 249250621 + 54472618 54472942 L1PA8 5853 - 6 346 119488 17 0 9 60 2 1 19 1 12 22 0 8 11 7 0 9 2 1 70 2 0 44 1 0 57 chain 26482 chr1 249250621 + 54485791 54486140 LTR7 482 - 9 482 98105 89 0 2 92 0 32 33 0 1 60 9 98 66 chain 30558 chr1 249250621 + 54491549 54491867 AluYb9 318 - 0 318 83328 318 chain 9374 chr1 249250621 + 54529433 54529591 MER2 342 - 156 313 163690 103 3 0 12 18 20 22 chain 5703 chr1 249250621 + 54530671 54530741 MER51A 677 - 591 661 188089 70 chain 23752 chr1 249250621 + 54579049 54579344 AluSg7 307 - 10 306 111764 170 0 1 17 1 2 4 1 0 102 chain 17612 chr1 249250621 + 54630164 54630453 THE1A 353 - 50 353 133960 75 12 27 76 19 15 25 3 5 44 13 14 22 chain 116598 chr1 249250621 + 54630458 54632282 THE1A-int 1579 - 5 1579 32261 7 0 2 33 0 9 192 0 1 7 18 8 183 22 14 58 0 1 9 14 8 23 5 4 15 1 3 198 0 3 74 1 4 190 3 7 16 0 1 15 267 16 473 chain 26138 chr1 249250621 + 54651468 54651810 THE1B 368 + 0 368 99448 44 0 15 110 1 0 45 17 29 125 chain 156824 chr1 249250621 + 54698283 54700037 SVA_F 1814 + 0 1812 23753 188 0 1 206 0 1 229 40 0 76 0 40 139 0 2 55 1 0 10 0 15 261 0 37 151 0 3 398 chain 44251 chr1 249250621 + 54773215 54773737 MER41A 554 + 13 554 63880 63 0 19 459 chain 27138 chr1 249250621 + 54782030 54782321 AluYb8 318 + 0 289 95797 132 2 0 157 chain 7891 chr1 249250621 + 54878067 54878202 L1MB3 1562 + 1290 1425 171718 61 16 15 39 0 2 14 1 0 4 chain 11390 chr1 249250621 + 54899393 54899523 AluY 311 + 4 135 154742 48 0 1 82 chain 537727 chr1 249250621 + 54908646 54915079 L1PA5 6144 - 16 6143 3197 159 0 1 168 0 1 23 0 1 460 0 1 20 2 1 247 312 0 506 9 8 110 2 1 76 0 4 2908 1 0 141 0 1 512 1 0 332 0 1 346 3 4 95 chain 28121 chr1 249250621 + 54932590 54932940 THE1A 353 + 0 353 92567 47 0 1 247 0 2 56 chain 123229 chr1 249250621 + 54932940 54935119 THE1A-int 1579 + 0 1574 29969 24 5 6 154 0 3 95 0 4 73 316 0 37 298 0 253 1 0 179 7 6 46 0 3 691 chain 26984 chr1 249250621 + 54935127 54935480 THE1A 353 + 2 353 96335 11 2 0 81 1 0 85 1 2 172 chain 44024 chr1 249250621 + 54968680 54969537 MER41A 554 + 0 554 64178 345 0 1 60 4 0 14 300 0 134 chain 26074 chr1 249250621 + 54974150 54974445 AluSp 311 - 13 311 99730 204 0 3 91 chain 6038 chr1 249250621 + 54977526 54977620 MLT1A0 366 - 17 110 184911 24 11 10 59 chain 2967 chr1 249250621 + 54993080 54993114 U6 107 + 1 35 225713 34 chain 14194 chr1 249250621 + 54998634 54998786 L1PA3long 6157 + 6001 6153 143903 152 chain 25478 chr1 249250621 + 55018505 55018799 AluSp 311 - 17 311 102322 294 chain 15176 chr1 249250621 + 55020338 55020591 L1MA8 2339 - 426 676 140834 28 11 12 33 24 20 140 0 1 4 1 0 12 chain 132575 chr1 249250621 + 55026774 55028733 SVA_F 1814 - 3 1479 27506 624 1 0 10 1 0 166 1 0 10 3 0 39 304 14 17 0 1 31 2 1 17 0 1 25 1 0 26 191 4 490 chain 8469 chr1 249250621 + 55027629 55027717 SVA_F 1814 - 725 813 151337 88 chain 11698 chr1 249250621 + 55027798 55027933 SVA_F 1814 - 540 675 138783 135 chain 5881 chr1 249250621 + 55028052 55028115 SVA_F 1814 - 745 808 155073 63 chain 3684 chr1 249250621 + 55028156 55028243 SVA_F 1814 - 624 708 150774 65 3 0 19 chain 17708 chr1 249250621 + 55091661 55091896 AluSz 310 + 10 236 133679 110 0 1 57 10 0 58 chain 40467 chr1 249250621 + 55095959 55096448 MER9a1 513 + 1 513 68642 243 1 23 189 0 1 56 chain 290732 chr1 249250621 + 55097767 55101426 HERVK9-int 4720 + 36 4657 13977 13 8 5 4 1 0 65 1 0 10 1 0 29 1 0 875 35 18 321 1 0 228 10 205 678 8 9 154 52 690 16 1 101 400 0 48 338 0 3 229 0 1 114 7 6 11 0 2 48 chain 8641 chr1 249250621 + 55101455 55101787 MER9a1 513 + 0 354 72056 249 0 22 83 chain 78398 chr1 249250621 + 55101793 55102770 LTR5_Hs 974 - 0 974 44321 70 0 4 118 4 23 208 1 0 4 21 9 241 1 2 29 18 0 254 0 4 8 chain 3826 chr1 249250621 + 55102770 55102917 MER9a1 513 + 354 509 72056 131 1 9 15 chain 13660 chr1 249250621 + 55112813 55112985 L1MB5 1630 - 1001 1172 145742 15 1 0 156 chain 7583 chr1 249250621 + 55131997 55132098 LTR29 598 - 138 238 173649 10 3 2 88 chain 9169 chr1 249250621 + 55141673 55141844 MER53 195 + 0 195 164708 28 1 0 40 4 5 13 28 52 57 chain 13353 chr1 249250621 + 55199516 55199739 L1MB3 1562 - 7 290 146869 16 16 15 82 0 63 28 1 0 56 6 5 18 chain 13516 chr1 249250621 + 55203381 55203581 THE1B 368 - 0 195 146300 48 9 10 4 1 0 15 3 0 89 2 0 29 chain 25558 chr1 249250621 + 55221500 55221804 AluSp 311 + 2 306 101942 304 chain 5221 chr1 249250621 + 55228194 55228260 MER5A 189 - 123 189 192816 66 chain 3573 chr1 249250621 + 55238280 55238322 MADE1 96 - 53 95 214089 42 chain 7392 chr1 249250621 + 55239604 55239773 MLT1A1 405 - 60 214 174820 49 16 18 49 40 23 15 chain 29279 chr1 249250621 + 55287560 55287870 AluYa5 310 - 0 310 87653 310 chain 2563 chr1 249250621 + 55290305 55290531 L1M2 1805 - 1019 1240 232339 18 176 171 32 chain 17625 chr1 249250621 + 55308794 55309084 MER1B 344 + 47 344 133920 34 6 24 51 0 1 59 4 0 48 1 0 4 35 28 48 chain 23723 chr1 249250621 + 55339622 55340256 Tigger3b 1229 + 527 1037 111919 25 2 1 18 6 14 97 0 2 9 4 11 39 4 5 25 6 3 64 43 43 60 4 0 6 4 11 20 10 0 12 6 20 15 145 0 10 chain 290337 chr1 249250621 + 55365232 55368856 HERVH-int 3825 - 0 3825 13996 226 0 2 230 3 9 7 6 0 13 8 218 37 11 13 720 0 4 342 0 4 284 4 31 159 0 1 55 1 0 13 0 2 24 9 0 202 15 0 383 0 3 61 0 3 49 2 1 5 0 1 12 0 20 34 24 0 19 23 0 7 3 0 13 1 0 14 22 12 12 2 1 9 1 0 24 0 1 4 1 0 11 1 0 307 0 11 162 0 1 49 chain 34616 chr1 249250621 + 55372556 55372998 LTR7 482 - 12 482 76730 99 1 0 59 1 0 17 0 31 149 15 14 101 chain 12141 chr1 249250621 + 55376366 55376527 HERVH-int 3825 - 674 837 151650 60 1 4 71 1 0 28 chain 65228 chr1 249250621 + 55376681 55377439 LTR17 781 - 0 781 50457 31 0 22 678 0 1 49 chain 293128 chr1 249250621 + 55379494 55382870 HERV17-int 4347 - 955 4335 13815 88 0 3 160 1 0 1663 0 1 110 1 2 115 4 5 73 0 3 512 1 0 65 0 1 452 1 0 27 2 0 17 0 1 16 2 1 50 1 0 15 chain 61268 chr1 249250621 + 55384466 55385198 LTR17 781 - 0 781 52223 31 0 22 251 0 12 138 1 0 201 0 16 110 chain 82519 chr1 249250621 + 55389738 55390705 MER11C 1089 - 26 1089 42529 171 0 1 215 1 0 359 0 4 62 0 1 104 5 96 50 chain 7612 chr1 249250621 + 55396982 55397075 MSTB 430 - 322 414 173460 14 1 0 78 chain 26094 chr1 249250621 + 55399796 55400146 THE1B 368 - 18 368 99649 149 2 0 21 9 8 130 0 5 24 2 0 13 chain 44031 chr1 249250621 + 55417687 55418240 MER41A 554 + 0 554 64164 92 0 1 305 2 0 29 0 1 52 11 12 62 chain 3989 chr1 249250621 + 55423571 55423614 tRNA-Lys-AAG 49 - 6 49 207558 43 chain 14445 chr1 249250621 + 55424194 55424414 MER4A1 472 + 80 323 143065 25 0 10 103 7 0 5 1 0 7 11 32 61 chain 5498 chr1 249250621 + 55426666 55426731 MER61-int 3695 + 738 803 190063 65 chain 20253 chr1 249250621 + 55429255 55429594 MER51B 395 + 0 395 126369 33 17 36 31 13 19 91 1 0 4 0 1 18 5 25 36 4 15 86 chain 4259 chr1 249250621 + 55457894 55457942 MLT1H2 457 - 8 56 203761 48 chain 40710 chr1 249250621 + 55488380 55488822 LTR7 482 + 0 473 68292 260 0 31 182 chain 288582 chr1 249250621 + 55488843 55492300 HERVH-int 3825 + 0 3815 14115 466 1 119 19 29 0 15 0 37 42 2 1 54 3 4 5 0 2 15 1 0 291 13 14 147 15 0 454 4 31 359 0 1 270 0 4 97 0 1 672 8 218 259 0 2 216 chain 44502 chr1 249250621 + 55493559 55494042 LTR7 482 + 0 482 63577 284 1 0 198 chain 27633 chr1 249250621 + 55496625 55496979 THE1A 353 + 0 353 94255 108 3 2 243 chain 127447 chr1 249250621 + 55496979 55498549 THE1A-int 1579 + 0 1574 28702 12 2 4 211 3 0 555 0 1 107 0 1 36 0 1 105 0 2 539 chain 27460 chr1 249250621 + 55498554 55498904 THE1A 353 + 0 350 94782 229 0 1 4 1 0 116 chain 9657 chr1 249250621 + 55538666 55538876 L1MB3 1562 + 1376 1555 162316 31 63 34 27 1 0 55 1 0 32 chain 79806 chr1 249250621 + 55577866 55578792 L1PA7 6471 - 2921 3858 43679 450 0 4 14 0 6 381 1 0 26 0 1 35 0 1 19 chain 220522 chr1 249250621 + 55578800 55581850 L1PA7 6471 + 3549 6469 17845 51 0 4 432 0 1 64 0 1 56 0 120 291 2 0 15 0 8 46 0 1 30 0 12 396 0 1 18 0 1 67 3 0 274 10 9 174 0 3 38 0 2 22 12 14 24 1 6 38 330 39 20 11 17 45 0 1 428 2 1 150 chain 29711 chr1 249250621 + 55583119 55583443 AluYb8 318 + 0 316 85793 204 8 0 112 chain 67392 chr1 249250621 + 55592749 55593490 L1PA3long 6157 - 7 748 49490 741 chain 7080 chr1 249250621 + 55648036 55648124 MLT1B 390 + 283 374 176886 23 0 3 65 chain 12376 chr1 249250621 + 55658811 55659023 MER2 342 + 137 320 150728 140 32 5 13 4 3 17 1 0 5 chain 23449 chr1 249250621 + 55665462 55665841 THE1B 368 - 0 361 113387 74 1 0 101 31 24 45 12 13 47 6 0 16 0 1 34 6 0 6 chain 25461 chr1 249250621 + 55666996 55667302 AluSg4 309 + 0 309 102408 30 0 3 276 chain 10281 chr1 249250621 + 55682133 55682309 MER30 238 - 0 202 159233 46 3 0 26 15 15 10 7 35 23 0 1 46 chain 35594 chr1 249250621 + 55698413 55699005 MER41B 635 - 8 620 75420 35 18 31 159 18 22 17 2 0 5 0 2 57 10 12 53 6 19 22 34 22 41 1 2 25 1 0 88 chain 6912 chr1 249250621 + 55721291 55721466 Tigger5 388 + 192 362 178097 25 25 24 20 2 0 10 2 1 23 6 4 17 9 10 36 chain 3544 chr1 249250621 + 55728207 55728249 MER81 114 + 20 62 214656 42 chain 250824 chr1 249250621 + 55759429 55762750 L1PA6 6164 + 3023 6162 16192 159 2 3 369 1 2 140 1 0 266 1 0 875 0 1 272 0 1 112 0 2 45 4 100 8 0 17 444 294 0 154 18 18 145 5 0 6 chain 21883 chr1 249250621 + 55762131 55762409 L1PA6 6164 + 5879 6158 120700 125 15 16 138 chain 21176 chr1 249250621 + 55780067 55780419 THE1D 372 - 0 356 123289 147 1 0 17 8 17 15 6 10 70 12 16 6 3 0 15 12 3 40 chain 26640 chr1 249250621 + 55808562 55808917 THE1A 353 + 0 353 97507 15 2 0 30 9 10 41 1 0 257 chain 128464 chr1 249250621 + 55808917 55810808 THE1A-int 1579 + 0 1579 28462 367 1 2 4 1 0 203 1 0 4 0 1 404 5 6 5 1 0 318 0 1 147 313 0 117 chain 27055 chr1 249250621 + 55810808 55811161 THE1A 353 + 0 353 96095 47 0 1 46 1 0 135 0 1 4 2 1 118 chain 25236 chr1 249250621 + 55811684 55812017 THE1C 375 - 40 375 103558 140 7 5 18 1 0 26 0 4 34 0 1 107 chain 18610 chr1 249250621 + 55842294 55842524 7SK 245 - 16 244 131190 221 2 0 7 chain 187473 chr1 249250621 + 55855811 55858592 L1PB3 3668 - 74 2833 20294 12 1 0 13 8 4 36 3 1 25 1 0 21 26 8 80 7 6 97 1 0 58 0 2 10 1 0 6 0 1 18 5 7 66 0 1 105 0 1 17 0 5 6 2 0 68 1 0 98 1 2 155 1 0 114 0 4 85 2 0 124 5 6 52 2 0 116 12 8 46 8 11 69 0 2 28 0 1 67 41 35 123 1 3 218 9 5 13 0 1 139 1 5 115 10 17 36 9 7 11 11 5 223 3 1 27 0 3 11 2 1 10 1 0 34 2 0 7 4 6 41 chain 21879 chr1 249250621 + 55870667 55871036 THE1C 375 - 2 375 120719 23 12 11 45 15 17 61 10 13 13 3 0 8 0 1 4 1 2 105 8 9 61 chain 117692 chr1 249250621 + 55879975 55881640 L1PB1 5432 - 28 1665 31895 13 1 0 21 1 0 21 28 23 18 25 12 16 1 0 44 2 1 14 2 1 14 0 5 33 2 0 9 2 0 3 2 0 12 1 0 10 1 0 12 22 24 300 2 0 168 2 1 182 4 5 27 3 4 172 2 1 107 10 8 356 chain 3243 chr1 249250621 + 55884680 55884778 LTR16C 481 - 11 115 220168 30 33 31 17 7 15 11 chain 5022 chr1 249250621 + 55886902 55886978 MER39B 650 - 550 628 194914 39 8 10 29 chain 525182 chr1 249250621 + 55895937 55902497 L1PA7 6471 + 1 6469 4670 402 1 0 1832 24 24 274 4 5 89 146 5 62 0 1 179 2 1 22 4 6 30 0 1 167 3 7 147 1 2 121 0 1 195 0 5 37 1 0 7 0 1 188 0 19 175 3 1 305 0 1 5 0 3 208 1 2 137 0 4 58 1 2 129 4 6 309 0 1 444 1 0 28 0 1 160 1 4 337 0 1 305 1 2 10 chain 10539 chr1 249250621 + 55898566 55898689 L1PA7 6471 + 3862 3985 158098 123 chain 12959 chr1 249250621 + 55905449 55905605 L1PA7 6471 + 5463 5620 148396 27 0 1 129 chain 7330 chr1 249250621 + 55905605 55905691 L1PA7 6471 + 5624 5710 175223 86 chain 37829 chr1 249250621 + 55905693 55906129 L1PA7 6471 + 5710 6146 72366 436 chain 17888 chr1 249250621 + 55906432 55906663 L1PA7 6471 + 6137 6369 133141 166 8 9 57 chain 6856 chr1 249250621 + 55906669 55906748 L1PA7 6471 + 6383 6463 178535 75 0 1 4 chain 80009 chr1 249250621 + 55920841 55921766 L1PA5 6144 - 9 937 43588 243 0 1 358 0 3 236 1 0 87 chain 252401 chr1 249250621 + 55925053 55927945 L1PA5 6144 + 3247 6142 16106 41 0 1 212 1 2 943 0 1 211 0 1 148 5 6 478 5 3 848 chain 7252 chr1 249250621 + 55950559 55950645 HY3 101 - 15 101 175751 86 chain 41194 chr1 249250621 + 55953954 55954413 L1PA4 6152 + 5684 6143 67652 459 chain 44842 chr1 249250621 + 55957027 55957585 MLT2A2 560 - 0 558 63239 99 1 0 234 1 2 223 chain 314147 chr1 249250621 + 55959753 55963227 L1PA3long 6157 - 15 3486 12846 1471 0 1 256 4 0 1743 chain 22990 chr1 249250621 + 55980163 55980451 L1PA8 5853 - 5 287 115671 88 1 0 19 3 2 51 1 0 9 1 0 70 2 0 43 chain 543926 chr1 249250621 + 56027503 56033642 L1PA4 6152 - 0 6150 2223 998 0 5 329 5 6 111 0 2 246 0 1 515 0 1 634 1 0 818 0 1 665 5 6 1812 chain 25988 chr1 249250621 + 56051521 56051872 L1PA7 6471 - 3 361 100062 13 0 5 131 13 12 69 0 2 104 1 2 20 chain 27342 chr1 249250621 + 56085093 56085446 THE1C 375 + 0 350 95138 179 11 7 43 0 1 120 chain 16735 chr1 249250621 + 56114820 56115016 L1PA4 6152 - 1 210 136297 146 4 17 46 chain 6064 chr1 249250621 + 56127448 56127523 L1PB 1623 - 172 246 184708 5 1 0 69 chain 89014 chr1 249250621 + 56146498 56147582 L1PA6 6164 - 2 1086 39996 6 2 0 144 1 5 5 5 0 155 0 1 440 3 0 27 5 6 57 0 4 234 chain 26626 chr1 249250621 + 56156798 56157099 AluYk4 311 + 0 301 97572 301 chain 26482 chr1 249250621 + 56193520 56193882 MLT2A1 477 + 0 397 98114 142 11 12 14 1 5 8 0 36 168 6 0 12 chain 15671 chr1 249250621 + 56194093 56194296 MLT2A1 477 - 92 477 139364 105 0 182 5 2 0 5 0 2 86 chain 388170 chr1 249250621 + 56194716 56200155 HERVL-int 5654 + 642 5649 10513 10 1 2 181 9 10 193 0 2 78 4 0 183 439 10 413 0 2 145 0 1 112 5 0 77 41 42 142 55 8 20 26 23 193 0 1 4 2 14 1055 15 14 57 0 6 274 0 4 30 0 2 71 0 1 223 39 43 191 0 2 70 0 3 35 1 0 182 6 0 35 0 1 11 0 1 140 3 0 191 0 10 65 1 0 52 0 3 156 6 7 134 0 3 12 0 5 46 0 1 5 chain 24391 chr1 249250621 + 56201461 56201837 THE1D 372 - 0 372 108131 32 1 0 127 24 23 14 7 12 117 10 1 29 0 2 15 chain 3453 chr1 249250621 + 56207853 56207891 MADE1 96 - 58 96 216153 38 chain 36717 chr1 249250621 + 56208700 56209114 L1PA3long 6157 - 0 413 73932 339 1 0 74 chain 470053 chr1 249250621 + 56225766 56231726 L1PA7 6471 + 0 6467 8033 105 0 1 55 0 1 78 0 10 112 0 1 4 7 6 21 12 13 154 3 4 113 3 4 39 19 31 324 8 9 51 12 11 4 0 1 509 0 1 268 0 1 230 2 7 460 5 7 64 6 9 285 0 468 42 2 0 121 1 0 434 0 8 925 11 4 360 3 6 142 0 3 109 1 4 39 1 0 39 1 0 31 27 14 101 0 5 349 1 2 14 0 1 253 chain 171799 chr1 249250621 + 56249903 56251953 HERV17-int 4347 - 1837 4320 21845 245 0 3 1234 0 2 113 1 4 144 0 430 35 6 5 156 2 1 26 2 0 34 2 1 50 chain 29801 chr1 249250621 + 56365538 56365895 L1PA7 6471 + 6108 6465 85428 357 chain 15549 chr1 249250621 + 56385245 56385601 THE1D 372 + 0 372 139738 51 141 158 16 1 0 147 chain 122644 chr1 249250621 + 56399080 56400648 THE1A-int 1579 - 0 1579 30182 588 0 1 42 0 7 644 10 9 207 0 2 52 10 12 15 chain 28680 chr1 249250621 + 56401293 56401607 AluYa5 310 + 0 310 90407 126 4 0 184 chain 85178 chr1 249250621 + 56407527 56408447 L1PA3long 6157 - 0 920 41459 920 chain 31263 chr1 249250621 + 56418469 56418906 MLT2A1 477 + 0 477 82060 17 0 4 121 0 1 20 5 9 206 2 0 7 8 42 31 2 1 18 chain 89554 chr1 249250621 + 56461480 56462553 MER11B 1079 - 16 1079 39793 110 2 0 162 0 1 24 6 0 507 3 0 259 chain 130956 chr1 249250621 + 56487266 56488839 THE1A-int 1579 - 0 1579 27874 400 5 6 136 16 19 579 0 1 5 1 0 95 0 2 336 chain 33990 chr1 249250621 + 56489601 56490037 LTR3B 427 - 0 427 77629 79 1 0 6 15 10 30 3 0 302 chain 61222 chr1 249250621 + 56503004 56503803 L1PA8 5853 + 4846 5653 52244 163 0 5 27 1 2 39 0 2 49 2 5 426 1 0 44 16 14 31 chain 116274 chr1 249250621 + 56513935 56515257 L1PA5 6144 - 18 1345 32351 749 1 0 44 0 1 31 0 4 326 0 1 171 chain 67194 chr1 249250621 + 56515259 56516021 L1PA5 6144 + 4052 4812 49566 301 2 0 459 chain 276608 chr1 249250621 + 56555311 56558502 L1PA3long 6157 + 0 6157 14836 152 0 1 26 0 1 83 9 0 101 0 1 403 8 136 536 1 0 1155 0 8 132 1 2838 584 chain 40337 chr1 249250621 + 56574810 56575649 L1PBa 3878 + 1731 2253 68824 159 1 6 11 322 0 346 chain 7471 chr1 249250621 + 56576604 56576706 L1PB 1623 - 173 271 174335 16 4 0 82 chain 21806 chr1 249250621 + 56589449 56589715 L1PA7 6471 - 2 267 120997 12 1 0 253 chain 9973 chr1 249250621 + 56590262 56590382 MER5A 189 + 17 137 160710 120 chain 4774 chr1 249250621 + 56606229 56606297 MSTC 436 + 0 65 197650 15 3 0 50 chain 4582 chr1 249250621 + 56613258 56613315 MER20 218 - 0 57 199841 57 chain 4573 chr1 249250621 + 56619420 56619507 MER96B 391 + 79 163 199968 35 1 0 21 12 10 18 chain 20199 chr1 249250621 + 56625386 56625654 AluSg7 307 + 0 267 126531 46 9 7 77 1 2 135 chain 4773 chr1 249250621 + 56628088 56628147 L1MB1 2102 + 1946 2005 197659 59 chain 5906 chr1 249250621 + 56636560 56636647 LTR33A 529 - 124 209 186136 54 1 0 5 1 0 26 chain 22739 chr1 249250621 + 56650149 56650423 L1PA7 6471 + 6182 6456 116876 274 chain 229154 chr1 249250621 + 56708684 56711263 L1PA4 6152 - 9 2582 17349 1783 0 4 417 10 0 188 2 3 67 1 0 111 chain 17825 chr1 249250621 + 56713516 56713716 L1PA4 6152 - 25 225 133320 200 chain 2406 chr1 249250621 + 56723209 56723239 MIR 256 + 109 138 234147 25 1 0 4 chain 323185 chr1 249250621 + 56736672 56740497 L1PA6 6164 + 2335 6154 12470 419 2 1 430 3 0 4 0 1 512 11 0 512 0 2 146 0 4 110 0 1 842 3 4 831 chain 16121 chr1 249250621 + 56741259 56741504 L1PA8 5853 + 5611 5853 137990 67 2 1 61 2 1 10 16 15 87 chain 156484 chr1 249250621 + 56745821 56747570 L1PA5 6144 - 3 1754 23800 335 0 1 1224 0 1 190 chain 5857 chr1 249250621 + 56747694 56747882 Tigger1 2417 - 2215 2416 186623 60 4 6 15 89 100 20 chain 3047 chr1 249250621 + 56759566 56759598 MER96 175 + 101 133 224074 32 chain 360297 chr1 249250621 + 56831124 56834954 L1HS 6032 + 2202 6032 11355 3830 chain 5764 chr1 249250621 + 56835331 56835397 MER41B 635 - 88 154 187501 66 chain 4776 chr1 249250621 + 56843007 56843087 MADE1 96 - 1 96 197625 23 15 30 42 chain 21482 chr1 249250621 + 56854361 56854715 THE1B 368 - 4 368 122210 124 1 0 8 1 0 18 0 1 4 1 0 4 10 17 71 9 10 37 17 23 32 2 0 15 chain 8073 chr1 249250621 + 56856795 56856898 L1MA7 2200 + 1719 1822 170629 103 chain 62074 chr1 249250621 + 56868671 56869660 L1PB1 5432 + 4473 5420 51865 155 9 6 11 0 1 132 4 5 10 30 24 286 1 0 14 3 0 17 1 0 12 1 0 10 2 0 3 2 0 10 2 0 50 1 0 17 1 0 60 3 0 6 46 33 11 2 0 24 1 0 21 1 0 13 1 0 16 chain 29794 chr1 249250621 + 56887709 56888019 AluYa5 310 - 0 310 85478 310 chain 44227 chr1 249250621 + 56924579 56925120 MLT2A2 560 + 7 560 63912 377 0 1 17 0 11 147 chain 45590 chr1 249250621 + 56950393 56951047 L1PA16 3655 + 2908 3550 62418 9 1 0 126 1 0 40 7 0 40 6 4 77 1 0 82 7 5 125 5 6 51 4 5 72 chain 129710 chr1 249250621 + 57061321 57063484 L1PA7 6471 - 15 1598 28151 255 5 8 169 1 2 179 0 8 156 0 3 49 1 0 11 7 0 92 109 0 364 477 0 211 1 0 76 chain 40265 chr1 249250621 + 57062751 57063196 L1PA3long 6157 - 0 445 68921 445 chain 23302 chr1 249250621 + 57074833 57076038 THE1B-int 1605 - 0 1230 35754 11 0 3 5 11 8 767 124 124 21 9 9 196 4 29 57 chain 323936 chr1 249250621 + 57076056 57079821 L1PA6 6164 + 2338 6158 12443 171 0 1 394 0 19 5 1 2 259 0 1 75 0 3 81 0 11 508 0 4 1202 0 1 581 1 14 214 0 1 273 chain 7194 chr1 249250621 + 57079832 57080204 THE1B-int 1605 - 1230 1605 35754 72 0 1 19 3 4 188 9 10 81 chain 22783 chr1 249250621 + 57080204 57080511 THE1B 368 - 0 303 116663 78 3 0 118 7 6 101 chain 9080 chr1 249250621 + 57090043 57090161 THE1D-int 1627 + 1507 1622 165168 87 6 3 25 chain 4614 chr1 249250621 + 57128015 57128070 HSMAR2 1300 - 6 62 199472 5 0 1 50 chain 21168 chr1 249250621 + 57133862 57134099 L1PA2 6032 + 5794 6031 123314 237 chain 158079 chr1 249250621 + 57146036 57147805 L1PA5 6144 - 3 1777 23581 524 0 1 238 0 1 104 1 2 371 0 1 333 0 1 198 chain 22581 chr1 249250621 + 57167288 57167580 AluY 311 + 1 296 117666 71 1 8 43 2 0 10 2 0 163 chain 26572 chr1 249250621 + 57167746 57168054 AluSp 311 - 5 310 97751 5 3 0 300 chain 97918 chr1 249250621 + 57198878 57200061 L1P1 4361 - 990 2194 37300 34 0 2 180 2 0 248 0 20 185 5 0 9 8 13 372 0 1 140 chain 11632 chr1 249250621 + 57200061 57200194 L1PA6 6164 + 5730 5864 153763 96 0 1 37 chain 25546 chr1 249250621 + 57200195 57200493 L1PA6 6164 + 5864 6160 102013 229 2 0 67 chain 104957 chr1 249250621 + 57212940 57214244 L1PA8 5853 - 0 1321 35509 46 0 14 33 1 0 19 2 1 61 5 4 31 1 0 32 4 2 46 1 0 114 5 13 428 0 2 475 chain 38089 chr1 249250621 + 57240327 57240866 MLT2A2 560 + 0 560 72003 183 12 32 115 0 1 39 19 8 17 7 18 147 chain 28912 chr1 249250621 + 57242624 57242935 AluYa5 310 + 0 310 89404 123 1 0 187 chain 6235 chr1 249250621 + 57259146 57259221 L1PA16 3655 + 3487 3562 183282 75 chain 24521 chr1 249250621 + 57271286 57271648 THE1B 368 + 0 368 107434 44 0 15 110 1 0 19 8 4 114 7 6 15 8 5 36 chain 11814 chr1 249250621 + 57276965 57277230 LTR38B 592 + 18 336 152968 26 0 3 7 76 125 45 18 19 93 chain 39063 chr1 249250621 + 57299481 57299928 L1PA5 6144 + 5697 6142 70651 367 0 1 69 3 0 8 chain 117600 chr1 249250621 + 57312590 57314148 THE1A-int 1579 - 0 1579 31926 66 0 1 106 5 9 399 0 13 77 1 2 200 13 11 38 0 1 4 1 0 4 12 15 332 11 12 289 chain 21897 chr1 249250621 + 57335068 57335420 L1PB2 3958 - 120 472 120638 63 1 0 23 9 9 18 0 2 5 10 6 26 6 5 13 0 6 45 1 0 72 1 0 59 chain 4798 chr1 249250621 + 57335940 57336018 MADE1 96 - 1 96 197376 29 8 25 41 chain 34577 chr1 249250621 + 57352889 57353311 L1PA7 6471 - 512 937 76786 330 10 13 82 chain 41029 chr1 249250621 + 57353311 57353811 L1PA7 6471 + 5965 6467 67860 347 1 2 143 0 1 9 chain 27677 chr1 249250621 + 57368819 57369191 THE1C 375 + 0 375 94125 180 0 2 21 7 10 113 1 0 23 1 0 26 chain 6433 chr1 249250621 + 57412212 57412371 MER58A 224 + 53 214 181756 26 45 46 33 9 8 41 0 2 5 chain 5945 chr1 249250621 + 57431954 57432033 MADE1 96 + 1 96 185729 36 1 17 42 chain 28719 chr1 249250621 + 57493756 57494110 THE1A 353 + 0 353 90249 109 2 1 243 chain 125106 chr1 249250621 + 57494113 57495678 THE1A-int 1579 + 2 1574 29359 492 0 5 443 9 10 54 0 1 41 11 12 4 1 0 68 1 0 288 1 2 152 chain 25107 chr1 249250621 + 57495683 57496024 THE1A 353 + 0 353 104245 109 2 1 11 1 2 121 1 13 96 chain 11402 chr1 249250621 + 57614932 57615329 L1MB7 1623 - 209 557 154685 39 1 0 10 52 47 15 3 0 11 2 0 7 9 7 10 7 3 11 121 89 99 chain 107420 chr1 249250621 + 57620010 57621677 L1MA2 4263 - 150 1819 34861 9 1 0 21 1 0 17 19 12 10 0 2 34 7 3 40 11 9 98 0 1 48 3 0 147 1 0 65 22 19 38 0 10 54 10 21 52 5 0 28 0 3 5 4 1 93 1 2 27 9 10 56 0 2 5 5 3 194 4 1 5 12 0 65 0 1 132 1 2 57 12 5 31 8 27 4 1 0 82 0 5 113 chain 27677 chr1 249250621 + 57673119 57673415 AluYa5 310 - 14 309 94126 203 1 0 92 chain 74226 chr1 249250621 + 57686242 57687074 L1PA5 6144 + 5301 6138 46402 217 0 5 615 chain 50772 chr1 249250621 + 57710959 57711567 L1PA6 6164 - 2 609 58449 534 5 4 69 chain 4914 chr1 249250621 + 57785762 57785826 THE1D 372 + 0 75 196130 48 0 11 16 chain 110292 chr1 249250621 + 57808256 57809643 LTR12C 1709 - 0 1709 34131 84 1 0 397 7 11 99 9 6 126 0 278 216 1 2 109 0 43 338 chain 9262 chr1 249250621 + 57882920 57883049 MER85 139 - 0 139 164250 23 4 0 6 0 14 96 chain 2529 chr1 249250621 + 57935470 57935497 MER103C 291 + 71 98 232756 27 chain 23777 chr1 249250621 + 57937134 57937478 THE1B 368 + 0 368 111611 44 0 15 113 1 0 21 13 11 10 0 4 6 11 19 125 chain 36494 chr1 249250621 + 57938028 57938489 LTR2 463 + 0 463 74246 359 15 16 49 1 2 37 chain 19082 chr1 249250621 + 57943590 57943805 L1PA5 6144 - 14 229 129874 215 chain 28371 chr1 249250621 + 57945543 57945839 AluYg6 310 + 0 296 91695 296 chain 21324 chr1 249250621 + 57954103 57954357 AluSp 311 + 37 291 122778 254 chain 42803 chr1 249250621 + 57988301 57988848 MLT2A2 560 + 0 560 65654 75 1 2 303 0 1 25 0 11 143 chain 6172 chr1 249250621 + 58021773 58022690 L1PB1 5432 - 282 1218 36231 4 1 0 8 1 0 23 3 0 6 10 11 285 12 11 175 3 0 181 2 1 23 0 6 106 2 0 20 0 24 52 chain 208707 chr1 249250621 + 58023196 58028966 HERVL-int 5654 + 1 5407 8721 97 0 1 857 60 0 131 0 1 406 5 6 194 6 11 18 14 18 151 1 0 126 0 1 909 1 0 1165 19 20 399 314 0 25 7 0 125 0 4 266 3 4 133 18 18 107 0 1 21 1 2 11 3 0 97 0 1 80 chain 536684 chr1 249250621 + 58028985 58035430 L1PA5 6144 + 3 6142 3352 575 0 1 144 0 1 25 0 1 399 0 3 275 0 9 244 0 1 632 1 0 196 1 0 241 0 1 1637 0 1 119 0 1 874 1 0 288 309 0 202 14 4 254 3 0 11 chain 8934 chr1 249250621 + 58035430 58035677 HERVL-int 5654 + 5407 5654 8721 247 chain 5607 chr1 249250621 + 58036112 58036945 L1PB1 5432 - 1218 2026 36231 60 0 1 13 0 1 171 29 6 230 12 7 72 1 0 27 0 2 73 0 8 8 14 6 123 chain 3987 chr1 249250621 + 58088272 58088322 MIR 256 - 133 185 207570 11 0 2 39 chain 34285 chr1 249250621 + 58100934 58101458 MER1A 529 + 0 529 77232 171 54 46 74 6 18 148 7 8 64 chain 25755 chr1 249250621 + 58101493 58101798 AluYk4 311 + 8 311 101062 120 2 0 183 chain 23893 chr1 249250621 + 58127879 58128167 AluSp 311 - 24 311 110940 110 6 5 172 chain 23778 chr1 249250621 + 58133348 58133701 L1PA8 5853 + 5494 5853 111604 70 1 0 42 10 8 64 2 1 15 6 5 41 2 1 19 1 0 43 0 13 37 chain 711 chr1 249250621 + 58155725 58155872 L1MA2 4263 - 150 288 127597 8 1 0 47 7 0 8 11 10 65 chain 17320 chr1 249250621 + 58155938 58156321 MSTA 426 + 0 426 134732 55 57 82 90 84 102 97 chain 51304 chr1 249250621 + 58156762 58157432 LTR12 884 + 0 869 58108 24 1 0 55 0 66 174 0 25 33 2 0 171 0 103 103 1 9 106 chain 41151 chr1 249250621 + 58157493 58157990 HERV9-int 5642 + 25 525 67714 271 0 3 226 chain 7577 chr1 249250621 + 58158956 58159047 LTR12 884 + 0 90 139155 24 1 0 66 chain 25581 chr1 249250621 + 58159047 58159439 LTR12 884 + 288 743 101821 33 25 0 15 28 15 27 2 0 170 0 103 92 chain 2081 chr1 249250621 + 58159080 58159105 LTR12 884 + 123 148 139155 25 chain 2081 chr1 249250621 + 58159120 58159145 LTR12 884 + 163 188 139155 25 chain 8962 chr1 249250621 + 58159447 58159557 LTR12 884 + 759 869 165815 110 chain 1180 chr1 249250621 + 58159591 58159835 L1MA2 4263 - 797 1060 127597 50 0 1 51 0 1 61 1 20 42 2 0 37 chain 70344 chr1 249250621 + 58166594 58167376 L1PA4 6152 + 5359 6152 48245 620 1 12 161 chain 31293 chr1 249250621 + 58208803 58209232 LTR7B 505 + 0 503 82000 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 40 1 0 29 0 1 52 14 13 49 chain 41319 chr1 249250621 + 58209346 58209837 MER9a1 513 - 0 513 67511 246 1 23 244 chain 8559 chr1 249250621 + 58230217 58230381 L1MA5A 2387 - 133 263 167971 24 28 0 12 3 0 29 4 3 31 2 0 31 chain 3212 chr1 249250621 + 58334287 58334323 MER20 218 - 182 218 220706 36 chain 29614 chr1 249250621 + 58343213 58343535 AluYb8 318 - 0 318 86164 186 4 0 132 chain 84095 chr1 249250621 + 58356626 58357674 L1PA7 6471 + 5400 6468 41854 198 0 4 17 1 0 81 0 2 43 0 1 49 1 2 39 1 0 266 0 8 21 0 1 47 17 21 119 1 2 147 chain 25865 chr1 249250621 + 58368541 58368906 THE1B 368 - 1 368 100586 127 1 0 10 27 31 30 1 0 169 chain 191136 chr1 249250621 + 58378062 58380245 L1PA4 6152 + 3936 6143 19948 1854 0 1 127 13 32 29 21 24 35 0 1 104 chain 145932 chr1 249250621 + 58443467 58445243 L1PA7 6471 + 4690 6464 25181 257 3 2 672 1 0 82 0 1 70 0 3 357 1 0 173 0 1 71 1 0 80 3 0 5 chain 5521 chr1 249250621 + 58478105 58478172 L1PA2 6032 + 5965 6030 189825 56 2 0 9 chain 18633 chr1 249250621 + 58490298 58490667 MLT2B4 540 + 0 481 131128 29 7 12 84 0 2 78 18 28 15 28 27 16 42 138 52 chain 155403 chr1 249250621 + 58516735 58518520 L1PA6 6164 - 12 1802 23937 361 0 1 468 0 4 675 1 0 189 0 1 91 chain 3496 chr1 249250621 + 58523389 58523435 MLT1C 463 + 392 437 215416 25 1 0 20 chain 29117 chr1 249250621 + 58551630 58551934 AluYa5 310 - 6 310 88472 304 chain 14285 chr1 249250621 + 58559132 58559332 MER1B 344 + 138 339 143607 127 15 16 58 chain 97967 chr1 249250621 + 58580618 58581671 L1HS 6032 + 4977 6030 37288 1053 chain 552269 chr1 249250621 + 58592127 58598157 L1PA2 6032 - 0 6032 1162 151 3 1 1298 0 1 551 0 3 1337 0 1 2434 1 0 255 chain 71903 chr1 249250621 + 58616366 58617174 L1PA5 6144 - 4 809 47521 144 4 0 607 0 1 53 chain 68077 chr1 249250621 + 58632831 58633668 LTR12 884 + 0 884 49208 96 25 0 23 0 25 175 0 25 25 1 23 492 chain 1859 chr1 249250621 + 58632927 58632952 LTR12 884 + 137 162 132870 25 chain 419367 chr1 249250621 + 58633696 58638951 HERV9-int 5642 + 0 5064 9552 502 0 6 204 0 4 79 1 0 232 240 0 80 3 0 110 28 56 259 1 0 4 5 6 82 1 0 4 0 1 651 8 10 506 0 6 1197 7 9 185 0 4 604 0 1 262 chain 4909 chr1 249250621 + 58634814 58634870 HERV9-int 5642 + 1047 1103 196176 56 chain 70528 chr1 249250621 + 58640273 58641150 LTR12 884 + 0 884 48146 103 40 0 216 0 25 12 0 22 506 chain 21975 chr1 249250621 + 58658167 58658529 L1PB4 2604 - 85 410 120334 11 0 1 94 7 8 19 17 0 9 32 4 167 0 6 6 chain 63867 chr1 249250621 + 58681710 58682447 L1PA7 6471 - 7 745 51070 148 0 1 589 chain 112130 chr1 249250621 + 58690388 58691623 L1PA4 6152 + 4895 6132 33630 1012 0 1 74 1 2 148 chain 82775 chr1 249250621 + 58720067 58720973 L1PA2 6032 - 3 902 42429 267 0 1 196 8 0 435 chain 555416 chr1 249250621 + 58734685 58740704 L1PA2 6032 - 0 6032 780 467 8 0 819 0 1 2466 0 16 1435 0 4 824 chain 19604 chr1 249250621 + 58743728 58744092 THE1D 372 + 0 372 128373 56 25 16 58 9 23 31 46 50 101 8 7 30 chain 58587 chr1 249250621 + 58750727 58751564 L1PA10 4194 + 3335 4159 53646 52 0 1 142 0 1 93 1 9 10 79 0 7 0 46 32 0 11 251 0 3 123 4 1 33 1 0 9 chain 154506 chr1 249250621 + 58786976 58788906 L1PA6 6164 + 12 6149 24045 51 1 2 394 7 6 258 8 4214 315 0 1 896 chain 22211 chr1 249250621 + 58789342 58789613 AluY 311 + 33 299 119295 18 6 0 81 0 1 166 chain 3107 chr1 249250621 + 58809784 58809818 MIRb 242 + 72 106 222783 34 chain 145021 chr1 249250621 + 58815147 58816903 L1PA7 6471 - 15 1773 25326 17 0 1 306 1 2 399 5 7 109 1 0 66 2 1 51 1 0 213 0 1 49 0 1 372 1 0 163 chain 5423 chr1 249250621 + 58823320 58823383 MER5A1 166 - 29 92 190783 63 chain 553177 chr1 249250621 + 58838843 58844878 L1PA2 6032 - 0 6032 1047 465 12 6 2000 1 0 433 0 4 3124 chain 39536 chr1 249250621 + 58850179 58850724 MLT2A2 560 - 3 559 69977 113 6 2 22 10 21 282 1 3 37 4 6 70 chain 7368 chr1 249250621 + 58853699 58853890 LTR48 738 - 505 731 174992 32 1 0 57 79 115 22 chain 25128 chr1 249250621 + 58862454 58862749 AluY 311 + 2 295 104137 117 3 0 13 1 2 161 chain 8050 chr1 249250621 + 58873222 58873327 MER20 218 + 110 214 170758 39 1 0 65 chain 26500 chr1 249250621 + 58927781 58928061 AluYb8 318 - 2 282 98043 280 chain 5407 chr1 249250621 + 58954471 58954545 L1PB1 5432 - 139 211 190917 12 1 0 45 1 0 15 chain 548750 chr1 249250621 + 58954634 58961096 L1PA4 6152 + 6 6146 1608 1832 322 0 919 0 1 368 1 0 3020 chain 11472 chr1 249250621 + 58971964 58972093 L1PA4 6152 - 4 133 154413 129 chain 7445 chr1 249250621 + 58994269 58994365 MER20 218 + 123 218 174475 34 1 0 61 chain 37119 chr1 249250621 + 59014902 59015382 LTR15 485 + 0 485 73356 150 0 2 41 0 1 31 12 11 205 0 2 11 8 9 22 chain 154207 chr1 249250621 + 59028137 59029921 L1PA7 6471 + 4681 6468 24073 182 5 4 754 2 0 24 0 4 151 0 1 656 0 1 10 chain 94319 chr1 249250621 + 59048043 59049064 L1PA3long 6157 - 0 1021 38255 1021 chain 29794 chr1 249250621 + 59059631 59059941 AluYa5 310 - 0 310 85477 310 chain 279049 chr1 249250621 + 59066021 59070155 L1PB2 3958 - 120 3933 14691 63 2 1 92 1 0 65 1 0 72 1 0 94 3 1 11 2 0 65 13 0 13 1 0 54 2 0 32 0 5 46 9 5 8 0 4 49 0 1 38 3 4 191 1 0 172 10 8 261 3 0 180 0 1 157 17 19 264 8 3 169 0 4 16 0 6 14 0 3 125 0 1 103 8 10 89 0 2 64 11 1 36 0 3 4 0 1 189 300 7 7 0 8 210 0 1 436 0 4 116 2 0 3 1 0 47 25 17 25 8 6 24 9 4 19 10 5 14 19 14 27 chain 7496 chr1 249250621 + 59078535 59078758 MER49 923 + 0 224 174177 29 1 3 15 108 107 70 chain 2824 chr1 249250621 + 59085626 59085658 MER5A1 166 - 33 65 228409 32 chain 135491 chr1 249250621 + 59088920 59090506 LTR12C 1709 + 0 1709 26926 266 0 1 342 8 9 32 0 119 68 1 0 75 0 2 198 1 0 5 3 1 106 0 4 481 chain 127726 chr1 249250621 + 59100758 59102324 THE1A-int 1579 + 0 1578 28637 246 0 10 446 1 0 4 0 1 276 7 8 159 0 1 22 13 12 193 0 1 199 chain 24540 chr1 249250621 + 59102325 59102681 THE1A 353 + 0 353 107312 15 2 0 32 0 1 48 22 21 46 2 1 189 chain 27810 chr1 249250621 + 59169450 59169894 LTR7B 505 + 0 490 93665 108 0 10 30 22 65 12 34 27 26 0 2 85 1 0 72 18 17 36 chain 41405 chr1 249250621 + 59170094 59170775 MER4A 717 + 0 692 67410 43 5 6 74 11 0 69 0 1 60 0 9 6 0 5 7 0 1 84 33 42 27 29 8 52 29 45 31 1 2 120 chain 23010 chr1 249250621 + 59213790 59214077 AluSp 311 + 19 295 115573 192 11 0 84 chain 28327 chr1 249250621 + 59225888 59226186 AluYa5 310 - 12 310 91842 298 chain 49325 chr1 249250621 + 59236309 59236838 L1PA3long 6157 - 457 986 59501 529 chain 40122 chr1 249250621 + 59236838 59237292 L1PA3long 6157 + 5701 6157 69152 449 0 2 5 chain 23612 chr1 249250621 + 59237527 59237814 AluSc5 308 - 0 287 112515 287 chain 21893 chr1 249250621 + 59253374 59253633 AluSp 311 - 13 272 120650 259 chain 30162 chr1 249250621 + 59263814 59264149 L1PA4 6152 + 5801 6136 84304 335 chain 31671 chr1 249250621 + 59266812 59267230 L1PA8 5853 - 0 414 81371 93 1 0 19 2 1 51 15 13 68 2 0 44 1 0 42 0 3 80 chain 11767 chr1 249250621 + 59310692 59310889 MER2 342 - 6 202 153183 30 26 27 14 11 0 73 0 9 43 chain 28413 chr1 249250621 + 59322000 59322353 THE1A 353 + 0 353 91523 106 5 4 42 0 1 200 chain 29327 chr1 249250621 + 59354118 59354428 AluYa5 310 - 0 310 87407 310 chain 10012 chr1 249250621 + 59386118 59386236 L1PA4 6152 + 6033 6151 160525 118 chain 26852 chr1 249250621 + 59417613 59418117 THE1A 353 + 0 353 96803 109 2 1 15 165 16 161 1 0 51 chain 124989 chr1 249250621 + 59418117 59419684 THE1A-int 1579 + 0 1574 29396 865 0 1 227 2 0 5 0 2 5 1 7 462 chain 523566 chr1 249250621 + 59423810 59429947 L1PA5 6144 + 3 6138 4804 520 0 1 36 10 9 132 12 5 664 0 2 2010 0 3 296 0 1 2113 4 3 340 chain 7167 chr1 249250621 + 59500106 59500205 MLT1A0 366 - 261 354 176291 75 6 0 18 chain 5842 chr1 249250621 + 59511517 59511605 MER5A 189 + 82 171 186752 41 6 7 41 chain 26159 chr1 249250621 + 59517450 59517751 AluSp 311 + 1 305 99368 90 0 3 211 chain 3736 chr1 249250621 + 59519311 59519356 MADE2 80 + 12 57 211368 45 chain 24993 chr1 249250621 + 59539552 59539854 AluY 311 + 0 303 104833 126 0 1 44 0 4 119 4 0 9 chain 3981 chr1 249250621 + 59541310 59541375 MER53 195 - 17 87 207666 36 3 0 7 0 4 10 0 4 9 chain 4042 chr1 249250621 + 59543019 59543067 MIR 256 + 95 143 206763 48 chain 25521 chr1 249250621 + 59552974 59553319 THE1A 353 - 0 353 102137 181 1 11 51 2 1 6 1 0 103 chain 29563 chr1 249250621 + 59569290 59569651 L1PA7 6471 + 6111 6467 86364 165 11 6 185 chain 25533 chr1 249250621 + 59632566 59633005 L1PA13 3608 + 3101 3518 102086 31 1 0 28 1 0 113 2 0 41 25 24 11 6 7 6 2 0 29 1 0 4 3 1 48 2 0 4 2 0 20 1 0 20 24 16 14 chain 33694 chr1 249250621 + 59634337 59634812 L1PA8 5853 + 5386 5853 78100 174 1 0 47 3 1 14 1 0 56 2 1 8 2 1 52 2 1 15 1 8 7 8 0 82 chain 9063 chr1 249250621 + 59634825 59635067 L1MB8 1703 + 1492 1678 165242 78 83 39 7 4 0 8 5 0 38 3 0 16 chain 18856 chr1 249250621 + 59641129 59641355 AluSc5 308 - 74 298 130501 108 2 0 116 chain 151322 chr1 249250621 + 59671855 59673711 L1P3 4156 + 0 1848 24429 186 5 6 58 1 0 149 7 2 243 0 1 560 4 0 498 0 1 6 1 0 138 chain 219089 chr1 249250621 + 59673725 59676629 L1PA7 6471 + 3852 6455 17938 817 5 9 22 0 1 582 0 7 367 313 0 45 1 0 611 0 1 141 chain 24390 chr1 249250621 + 59683153 59683508 THE1B 368 - 0 368 108135 56 13 11 125 8 7 86 1 2 23 1 16 42 chain 19015 chr1 249250621 + 59698906 59699270 THE1B 368 + 0 368 130075 111 11 12 46 67 71 66 26 25 37 chain 93683 chr1 249250621 + 59711304 59712541 L1PA8 5853 - 0 1233 38444 16 0 1 76 1 0 16 1 0 45 7 11 9 1 0 71 2 0 46 1 0 26 9 8 518 2 0 4 1 0 369 0 1 16 chain 13597 chr1 249250621 + 59712609 59712778 LTR10F 562 + 385 554 145986 169 chain 534364 chr1 249250621 + 59716495 59722632 L1PA4 6152 + 8 6152 3669 114 6 20 13 26 12 134 8 9 137 3 4 332 0 1 2826 0 1 990 4 0 147 0 7 1397 chain 37381 chr1 249250621 + 59738848 59739729 L1PB3 3668 + 2937 3566 72988 51 2 0 15 28 0 77 0 2 50 37 40 11 181 0 108 1 0 95 6 5 87 63 10 9 1 0 6 2 1 14 5 16 32 chain 10215 chr1 249250621 + 59739162 59739270 L1PA5 6144 + 6022 6130 159538 108 chain 30091 chr1 249250621 + 59754482 59754800 AluYb8 318 - 0 318 84524 318 chain 36752 chr1 249250621 + 59765244 59765708 LTR10F 562 - 19 560 73873 312 3 0 24 0 20 25 0 56 41 0 4 59 chain 81550 chr1 249250621 + 59776965 59777976 L1PA8A 6298 - 8 1007 42956 98 2 1 428 8 0 214 1 0 64 1 0 172 1 0 22 chain 18061 chr1 249250621 + 59779278 59779618 L1PB1 5432 + 5114 5422 132693 24 1 0 9 1 0 10 6 2 9 2 0 52 2 1 15 1 0 44 1 0 16 14 1 26 15 12 11 2 0 26 1 0 19 1 0 13 1 0 18 chain 6750 chr1 249250621 + 59787990 59788108 L1PB1 5432 - 10 124 179317 18 1 0 9 1 4 21 1 0 24 2 0 14 1 0 5 3 1 18 chain 29703 chr1 249250621 + 59789938 59790247 AluYa5 310 - 1 310 85822 309 chain 19226 chr1 249250621 + 59802162 59802417 L1PA8 5853 - 0 250 129446 93 1 0 19 2 1 20 0 1 31 1 0 9 2 1 70 2 0 5 chain 42629 chr1 249250621 + 59812775 59813259 L1PA4 6152 - 6 488 65865 316 3 1 165 chain 548795 chr1 249250621 + 59834596 59840747 L1PA3long 6157 + 0 6157 1603 285 1 2 205 0 1 891 1 9 1304 1 0 462 4 0 107 0 4 1092 0 4 575 0 3 108 0 1 770 13 9 171 7 0 154 chain 139364 chr1 249250621 + 59845485 59847079 L1PA5 6144 - 12 1614 26237 129 6 10 696 1 5 249 0 1 420 1 0 92 chain 7566 chr1 249250621 + 59847079 59847192 Tigger3b 1229 - 621 745 173763 22 3 15 8 1 0 79 chain 487972 chr1 249250621 + 59925769 59933177 L1PA6 6164 + 170 6162 7445 4 1 0 20 6 5 164 2 0 146 2 1 140 1 0 201 1 3 28 13 5 93 0 16 614 0 4 228 1444 0 481 4 2 821 4 6 27 5 0 6 2 0 4 0 1 340 1 0 32 0 9 125 0 1 141 0 1 92 3 6 33 1 3 305 1 2 64 1 0 24 0 2 346 0 1 774 0 4 170 1 2 318 0 3 174 chain 25615 chr1 249250621 + 59927502 59927782 L1PA3long 6157 - 2 282 101651 280 chain 89968 chr1 249250621 + 59927782 59928780 L1PA3long 6157 + 4798 5797 39662 454 0 1 544 chain 6397 chr1 249250621 + 59928806 59928877 L1PA3long 6157 + 5797 5868 174289 71 chain 124459 chr1 249250621 + 59937620 59939164 LTR12C 1709 + 0 1709 29555 90 0 3 185 15 15 45 0 43 83 5 6 180 0 119 68 1 0 116 50 0 118 0 47 106 0 4 399 1 0 82 chain 3983 chr1 249250621 + 59938408 59938458 LTR12C 1709 + 1112 1160 122682 4 4 2 42 chain 33402 chr1 249250621 + 59961342 59961901 L1PREC2 3366 - 360 879 78563 35 45 27 22 2 0 12 10 5 18 53 41 40 1 0 54 2 0 265 chain 27716 chr1 249250621 + 59980220 59980573 THE1A 353 + 0 353 93985 34 7 8 68 1 0 243 chain 40401 chr1 249250621 + 59980573 59981194 THE1A-int 1579 + 0 1579 68735 81 98 1052 207 0 4 235 chain 7969 chr1 249250621 + 59980654 59980752 THE1A-int 1579 + 1422 1520 165466 98 chain 25962 chr1 249250621 + 59982926 59983198 AluYa5 310 - 0 272 100161 272 chain 110890 chr1 249250621 + 59998667 60000000 L1HS 6032 + 2 1361 33968 61 3 0 5 1 5 76 6 5 98 1 4 62 12 15 235 0 4 194 0 16 67 0 1 4 1 0 507 chain 416581 chr1 249250621 + 60000000 60004677 L1PA3long 6157 + 1489 6157 9620 1769 10 14 504 24 0 95 0 2 45 0 5 747 0 1 633 0 4 537 1 0 240 0 2 5 2 0 65 chain 85262 chr1 249250621 + 60023969 60025077 MER11A 1151 - 0 1144 41437 179 0 1 55 0 1 18 0 1 37 6 40 133 0 1 24 0 1 69 5 6 100 8 9 35 0 1 51 0 1 95 0 2 61 1 0 31 2 0 21 8 0 68 0 2 101 chain 38167 chr1 249250621 + 60041760 60042238 L1PA8 5853 + 5383 5853 71888 181 1 0 44 2 0 72 1 0 13 1 0 14 1 0 33 2 1 19 1 0 93 chain 233516 chr1 249250621 + 60049673 60052338 L1PA4 6152 + 3475 6151 17117 209 5 0 659 0 1 955 0 7 171 0 4 340 0 3 322 0 1 4 chain 547641 chr1 249250621 + 60052483 60058597 L1PA3long 6157 + 6 6137 1747 1156 0 3 540 1 6 723 0 3 1508 1 0 4 0 1 762 0 1 592 1 6 826 chain 28457 chr1 249250621 + 60075751 60076196 L1PA8 5853 - 0 442 91342 93 1 0 18 3 2 44 32 30 58 2 0 44 1 0 28 12 16 109 chain 523869 chr1 249250621 + 60076208 60082305 L1PA4 6152 + 10 6143 4780 699 2 1 108 3 9 22 15 23 705 0 3 968 1 0 216 0 1 2108 0 4 627 0 11 160 1 2 140 0 4 322 chain 14541 chr1 249250621 + 60094709 60094887 L1PA6 6164 + 5976 6160 142752 171 0 6 7 chain 548699 chr1 249250621 + 60113419 60119451 L1PA2 6032 - 0 6032 1616 2336 0 1 134 2 1 71 0 1 95 0 1 4 1 0 848 1 0 2540 chain 27561 chr1 249250621 + 60120947 60121328 L1PA8 5853 - 1 377 94465 92 1 0 19 2 1 38 0 6 7 6 0 10 2 1 70 2 0 22 0 2 22 1 0 41 1 0 45 chain 15715 chr1 249250621 + 60128303 60128546 Tigger3a 397 + 139 383 139229 123 3 1 63 24 27 30 chain 14815 chr1 249250621 + 60162887 60163212 L1MB3 1562 - 10 304 141896 20 30 29 35 1 0 24 49 23 38 9 7 25 2 1 7 0 1 6 1 0 78 chain 103182 chr1 249250621 + 60175869 60177122 L1PA7 6471 + 5210 6468 35955 410 1 4 130 0 2 14 3 2 21 0 2 526 1 2 136 2 0 9 chain 119553 chr1 249250621 + 60177549 60179089 THE1B-int 1605 - 0 1604 31199 5 0 1 333 1 3 269 2 3 194 14 47 21 0 1 264 11 36 185 0 1 241 chain 3491 chr1 249250621 + 60197676 60197753 MIRb 242 + 103 176 215497 29 27 23 21 chain 25230 chr1 249250621 + 60201597 60201958 THE1B 368 + 0 368 103589 44 6 21 96 12 11 28 7 0 70 0 1 22 1 0 75 chain 119948 chr1 249250621 + 60201993 60203528 THE1B-int 1605 + 37 1600 31077 76 1 4 311 13 38 604 5 6 395 1 0 129 chain 3385 chr1 249250621 + 60229267 60229310 L1MC4 1079 + 708 751 217364 43 chain 112311 chr1 249250621 + 60251483 60252989 THE1B-int 1605 - 18 1605 33585 460 0 1 102 5 20 31 20 57 96 0 1 94 23 21 233 12 39 160 4 6 266 chain 5052 chr1 249250621 + 60256213 60256277 L1MB5 1630 - 582 647 194610 55 0 1 9 chain 56068 chr1 249250621 + 60267338 60268282 L1PA11 4918 + 3746 4629 55081 354 21 27 18 0 1 114 35 15 56 5 0 16 17 10 35 3 2 13 2 0 68 2 0 13 1 0 20 44 31 15 1 0 13 2 0 11 47 33 18 chain 9820 chr1 249250621 + 60301328 60301639 MER1B 344 - 5 343 161492 54 19 18 55 29 56 21 3 0 5 103 107 22 chain 204545 chr1 249250621 + 60303367 60305835 L1PA7 6471 - 3 2474 18881 7 4 0 153 0 1 649 12 9 24 0 1 4 2 0 198 0 1 688 0 1 59 0 8 574 0 1 88 1 0 5 chain 2772 chr1 249250621 + 60337983 60338042 MER5A 189 - 44 104 229176 21 17 18 21 chain 8155 chr1 249250621 + 60339838 60339939 MER3 215 - 106 207 170194 101 chain 11779 chr1 249250621 + 60345159 60345383 MER30 238 - 0 204 153135 19 26 17 12 3 0 34 3 0 45 17 9 6 0 3 59 chain 68993 chr1 249250621 + 60347993 60348848 L1PA8 5853 - 0 854 48811 92 2 1 19 2 1 43 4 3 14 1 0 72 2 0 44 1 0 301 0 3 236 0 1 14 0 2 8 chain 28407 chr1 249250621 + 60348861 60349181 L1PA8 5853 + 4680 5000 91550 320 chain 83997 chr1 249250621 + 60352434 60353417 MER11C 1089 + 0 1073 41906 55 0 91 32 1 0 389 2 1 22 3 4 82 1 0 218 0 1 178 chain 121062 chr1 249250621 + 60354416 60355965 THE1B-int 1605 - 11 1605 30673 999 1 17 30 4 5 87 1 26 314 0 3 113 chain 14029 chr1 249250621 + 60369770 60369938 AluSc 308 + 8 172 144462 84 4 0 80 chain 22699 chr1 249250621 + 60371591 60371848 AluY 311 + 15 273 117080 117 0 1 140 chain 83961 chr1 249250621 + 60380016 60381038 LTR5B 1012 + 0 1012 41918 124 14 0 135 0 1 74 0 1 667 0 2 8 chain 68336 chr1 249250621 + 60386921 60387860 MER11D 897 + 0 897 49109 409 124 54 129 0 28 277 chain 9661 chr1 249250621 + 60387330 60387448 MER11D 897 - 448 570 161877 71 0 4 47 chain 35919 chr1 249250621 + 60403201 60403793 L1M1 2793 - 1312 1882 74989 25 16 0 5 2 0 13 0 6 140 81 72 41 1 0 176 9 8 41 0 1 42 chain 85921 chr1 249250621 + 60403830 60404837 LTR5B 1012 - 0 1012 41188 8 0 2 170 0 3 829 chain 4154 chr1 249250621 + 60406144 60406193 MADE1 96 + 47 96 205189 49 chain 3662 chr1 249250621 + 60415396 60415436 LTR1 825 - 343 383 212530 40 chain 16611 chr1 249250621 + 60425369 60425710 L1PB1 5432 + 5114 5423 136632 20 1 0 9 2 1 14 5 1 9 3 1 51 0 1 5 2 0 10 1 0 44 1 0 16 3 0 7 14 5 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 2 1 13 1 0 5 chain 118794 chr1 249250621 + 60434473 60435901 LTR12C 1709 - 0 1709 31491 153 2 1 50 1 0 96 0 4 156 1 0 21 0 4 106 3 1 5 1 0 85 0 278 131 0 1 51 1 0 96 5 6 464 chain 31067 chr1 249250621 + 60468065 60468404 L1PA2 6032 - 763 1102 82403 339 chain 67911 chr1 249250621 + 60468404 60469153 L1PA2 6032 + 5280 6026 49279 732 1 0 7 2 0 7 chain 2888 chr1 249250621 + 60470854 60470903 MIRb 242 - 86 137 227227 12 6 8 31 chain 21493 chr1 249250621 + 60521650 60521898 AluSx4 309 + 15 263 122167 248 chain 3279 chr1 249250621 + 60526575 60526612 Tigger11a 386 - 206 243 219399 37 chain 26584 chr1 249250621 + 60529525 60529911 MLT2A1 477 + 0 385 97712 144 0 1 23 6 3 146 6 30 10 25 2 26 chain 101026 chr1 249250621 + 60532368 60533739 L1PA8 5853 - 6 1341 36507 86 34 50 10 0 2 6 2 0 5 3 0 9 1 0 69 2 0 48 1 0 40 1 0 5 5 6 85 0 1 74 0 13 151 51 0 191 8 0 484 chain 42924 chr1 249250621 + 60552540 60553081 MLT2A2 560 + 0 558 65512 39 0 1 140 1 0 199 0 6 16 0 11 146 chain 85359 chr1 249250621 + 60627226 60628268 MER11C 1089 - 30 1089 41395 164 0 1 156 0 1 45 0 4 69 0 6 18 28 29 4 1 0 241 0 4 65 0 1 251 chain 24877 chr1 249250621 + 60649439 60649817 THE1B 368 - 0 368 105472 125 3 11 18 14 16 28 1 0 43 24 5 122 chain 116769 chr1 249250621 + 60649824 60651362 THE1B-int 1605 - 7 1578 32202 255 6 8 58 10 14 397 11 12 200 16 17 180 0 25 135 7 5 257 0 2 6 chain 25588 chr1 249250621 + 60653168 60653454 L1PA4 6152 - 0 287 101788 113 0 1 173 chain 22395 chr1 249250621 + 60665296 60665611 L1PA16 3655 - 67 364 118512 11 10 0 58 1 0 15 6 0 95 1 0 118 chain 27612 chr1 249250621 + 60671312 60671679 THE1C 375 + 2 375 94319 140 8 12 59 1 2 119 0 2 14 1 0 25 chain 79691 chr1 249250621 + 60673754 60674624 L1PA2 6032 - 1841 2711 43530 870 chain 165505 chr1 249250621 + 60674624 60676445 L1PA2 6032 + 4206 6025 22589 1813 2 0 6 chain 190782 chr1 249250621 + 60682223 60684349 L1PA3long 6157 - 1083 3191 19970 957 21 3 1148 chain 98988 chr1 249250621 + 60684349 60685426 L1PA3long 6157 + 5080 6157 37004 1077 chain 95186 chr1 249250621 + 60705968 60707063 L1PA5 6144 - 0 1095 38039 162 4 5 600 1 0 328 chain 194521 chr1 249250621 + 60712420 60714754 HERVL-int 5654 + 3297 5654 19625 49 0 2 17 0 1 644 0 1 433 8 9 320 3 14 499 0 3 72 0 3 70 0 1 219 chain 30907 chr1 249250621 + 60714754 60715177 MLT2A1 477 + 0 416 82673 170 4 1 8 1 2 17 0 1 198 4 0 9 2 0 10 chain 25292 chr1 249250621 + 60716417 60716695 L1PA2 6032 + 5754 6032 103259 278 chain 75907 chr1 249250621 + 60732925 60733756 L1PA3long 6157 - 3 834 45536 831 chain 23415 chr1 249250621 + 60744063 60744313 L1HS 6032 - 830 1080 113076 250 chain 76552 chr1 249250621 + 60744313 60745128 L1HS 6032 + 5216 6031 45186 815 chain 28480 chr1 249250621 + 60754938 60755252 AluYb8 318 + 0 311 91268 132 3 0 179 chain 400900 chr1 249250621 + 60788762 60794031 L1PA7 6471 - 8 5006 10057 241 0 1 236 345 46 320 15 27 643 1 0 267 6 9 14 0 11 265 0 1 258 8 9 23 0 1 254 1 0 165 14 10 95 1 2 42 4 1 889 2 4 108 0 2 405 15 16 345 1 0 9 0 2 277 chain 26008 chr1 249250621 + 60789239 60789532 AluSp 311 - 8 301 99982 293 chain 92126 chr1 249250621 + 60821259 60822312 L1PA5 6144 - 9 1062 38927 1053 chain 8448 chr1 249250621 + 60822313 60822408 L1PA5 6144 + 4962 5057 168573 95 chain 3446 chr1 249250621 + 60831606 60831651 MER58C 217 + 163 208 216274 45 chain 22106 chr1 249250621 + 60835092 60835378 MLT2A1 477 + 0 294 119756 137 5 6 25 1 5 81 0 3 37 chain 163526 chr1 249250621 + 60844479 60846281 L1PA3long 6157 - 0 1803 22859 697 0 1 1105 chain 197134 chr1 249250621 + 60846281 60848472 L1PA3long 6157 + 2186 4379 19415 1244 0 1 387 0 1 560 chain 24566 chr1 249250621 + 60848607 60848885 L1PA2 6032 + 5754 6032 107166 278 chain 28524 chr1 249250621 + 60870650 60870956 AluYa5 310 - 4 310 91083 306 chain 5553 chr1 249250621 + 60870966 60871038 L1PB4 2604 + 2425 2500 189535 64 0 3 8 chain 880 chr1 249250621 + 60902418 60902655 LTR8 732 + 46 283 134847 97 3 0 6 0 13 92 10 0 29 chain 11054 chr1 249250621 + 60902721 60902846 L1PA5 6144 - 3505 3630 155307 125 chain 309822 chr1 249250621 + 60902846 60906353 L1PA5 6144 + 2626 6132 13009 538 3 0 345 2 0 835 0 4 1784 chain 393 chr1 249250621 + 60906967 60907073 LTR8 732 + 609 730 134847 90 0 15 16 chain 6376 chr1 249250621 + 60928845 60928946 L1MB3 1562 - 12 111 182199 21 6 5 56 1 0 17 chain 122840 chr1 249250621 + 60930971 60932307 L1PA2 6032 - 755 2088 30103 500 2 0 585 1 0 248 chain 66576 chr1 249250621 + 60932307 60933034 L1PA2 6032 + 5305 6032 49839 727 chain 539361 chr1 249250621 + 60955804 60961814 L1PA3long 6157 + 0 6155 2918 152 0 1 588 0 1 35 6 145 1327 0 1 1696 0 1 2053 1 0 102 0 4 34 1 0 15 chain 32877 chr1 249250621 + 60976567 60976936 L1PA4 6152 - 0 384 79400 129 1 16 239 chain 30110 chr1 249250621 + 60976967 60977301 L1PA2 6032 - 3 337 84454 334 chain 10805 chr1 249250621 + 60977337 60977462 L1P1 4361 - 1721 1846 156278 125 chain 150363 chr1 249250621 + 60977462 60979164 L1P1 4361 + 2627 4328 24557 305 0 1 244 1 0 974 1 0 131 0 1 22 1 0 23 chain 97756 chr1 249250621 + 61016397 61017456 L1PA2 6032 + 4969 6027 37348 912 1 0 146 chain 57870 chr1 249250621 + 61027056 61027701 L1PA4 6152 - 14 658 54052 602 1 0 42 chain 18860 chr1 249250621 + 61065900 61066221 MSTA 426 - 1 322 130486 152 36 35 27 7 5 50 8 12 11 1 0 29 chain 293638 chr1 249250621 + 61069091 61073125 L1PA7 6471 + 2876 6470 13788 476 0 1 150 312 0 428 0 17 723 0 4 268 0 2 304 163 11 63 11 10 33 0 1 254 1 0 77 0 2 70 2 3 229 13 12 43 16 13 167 0 1 70 20 21 141 chain 6935 chr1 249250621 + 61071761 61071843 L1PA7 6471 + 3416 3497 177930 4 1 0 77 chain 5710 chr1 249250621 + 61071844 61071915 L1PA7 6471 + 3497 3572 184953 52 0 4 19 chain 17895 chr1 249250621 + 61098762 61099068 THE1B 368 - 62 368 133114 40 4 0 23 2 1 12 56 61 169 chain 553726 chr1 249250621 + 61105684 61111709 L1PA2 6032 + 1 6032 978 298 0 1 1506 0 1 686 0 4 3535 chain 108347 chr1 249250621 + 61150737 61152237 THE1B-int 1605 + 0 1599 34602 13 4 5 90 1 4 162 0 6 8 1 4 6 3 0 79 18 82 20 3 4 29 1 2 8 3 1 57 0 15 64 18 18 11 15 16 78 0 6 222 0 3 586 chain 130190 chr1 249250621 + 61153588 61155406 L1PA11 4918 + 2782 4567 28049 4 0 1 198 6 7 5 0 1 48 0 2 5 3 1 76 0 1 13 26 13 204 15 23 946 9 5 49 14 13 9 8 0 68 2 0 15 7 6 12 6 0 10 31 22 15 1 0 13 chain 19873 chr1 249250621 + 61183296 61183574 AluY 311 + 0 311 127581 16 3 0 115 13 14 32 0 39 20 2 0 61 2 0 14 chain 45300 chr1 249250621 + 61190020 61190647 L1PA13 3608 - 125 735 62718 17 1 0 18 2 0 5 2 0 45 7 5 8 5 0 50 1 0 62 2 0 101 13 12 32 2 1 254 chain 16705 chr1 249250621 + 61203780 61203967 L1PA5 6144 - 749 936 136389 187 chain 65085 chr1 249250621 + 61203967 61204709 L1PA5 6144 + 5403 6144 50536 592 1 0 149 chain 23229 chr1 249250621 + 61208468 61208724 L1PA5 6144 - 430 686 114550 256 chain 24572 chr1 249250621 + 61208724 61208999 L1PA5 6144 + 5720 5995 107125 275 chain 12567 chr1 249250621 + 61209000 61209154 L1PA5 6144 + 5995 6144 149982 143 5 0 6 chain 25349 chr1 249250621 + 61232077 61232444 THE1B 368 + 0 368 102964 169 1 0 16 14 15 10 0 4 14 14 15 68 5 1 56 chain 77624 chr1 249250621 + 61236354 61238199 L1PA5 6144 + 0 1843 5490 120 1 15 10 14 0 376 4 0 32 1 0 480 0 1 189 0 1 344 0 1 274 chain 522027 chr1 249250621 + 61238212 61244343 L1PA5 6144 - 0 6141 4958 113 1 0 730 0 4 106 0 1 43 0 5 229 0 1 1412 1 0 722 0 2 854 0 1 146 4 6 264 4 5 203 1 2 59 3 1 706 4 0 368 12 26 15 20 6 111 chain 180114 chr1 249250621 + 61244360 61248641 L1PA5 6144 + 1843 6144 5490 933 0 2 752 5 6 299 1 9 1239 0 1 106 0 1 100 0 4 243 5 0 257 8 13 181 0 1 12 0 3 27 8 7 105 chain 142910 chr1 249250621 + 61269201 61270875 L1PA5 6144 - 9 1672 25663 382 1 0 153 0 2 304 2 0 6 0 1 116 0 1 382 20 7 160 0 1 148 chain 70440 chr1 249250621 + 61305272 61306366 L1PA15 4387 + 3275 4350 48190 122 13 14 29 9 10 28 0 1 4 18 17 50 19 26 237 0 2 15 11 7 53 4 2 41 1 0 79 5 0 92 1 0 26 1 0 54 2 1 17 4 0 15 1 0 50 6 3 46 2 0 14 5 0 20 chain 26599 chr1 249250621 + 61310097 61310426 L1PA10 4194 + 3833 4161 97669 28 0 1 84 0 2 168 3 0 34 1 0 11 chain 7226 chr1 249250621 + 61326771 61326854 AluY 311 + 36 119 175907 83 chain 67781 chr1 249250621 + 61378889 61380198 L1MA2 4263 - 167 1139 49331 38 7 0 21 0 2 57 32 30 58 0 5 9 6 0 68 3 0 91 0 3 51 6 5 65 13 9 205 0 1 95 325 0 159 chain 3744 chr1 249250621 + 61381078 61381146 MLT1C 463 + 98 165 211263 13 2 0 7 5 6 41 chain 25013 chr1 249250621 + 61398329 61398637 AluY 311 + 0 302 104715 126 6 0 176 chain 30086 chr1 249250621 + 61406256 61406661 MER51B 395 - 0 395 84537 57 0 4 89 1 0 206 19 6 33 chain 14467 chr1 249250621 + 61435371 61435570 L1MB1 2102 - 262 461 142990 85 1 0 10 9 10 94 chain 5006 chr1 249250621 + 61439977 61440065 MLT1H 522 - 386 510 195064 53 0 49 8 13 0 14 chain 5646 chr1 249250621 + 61489513 61489678 MIR 256 - 25 190 188596 33 86 86 46 chain 17242 chr1 249250621 + 61504607 61504850 Tigger3c 601 - 0 258 134950 191 3 8 29 4 14 16 chain 24741 chr1 249250621 + 61507253 61507557 AluY 311 + 0 311 106213 46 1 7 79 0 1 178 chain 11490 chr1 249250621 + 61523296 61523567 AluSq2 311 - 9 156 154335 18 0 1 67 0 1 47 126 0 13 chain 8209 chr1 249250621 + 61599420 61599515 FAM 185 + 62 157 169901 95 chain 28820 chr1 249250621 + 61621063 61621369 AluYb8 318 + 0 306 89801 306 chain 10564 chr1 249250621 + 61671197 61671324 MER85 139 - 0 137 157979 40 0 10 87 chain 17026 chr1 249250621 + 61685405 61685637 AluSc 308 + 50 283 135518 85 0 1 4 14 13 4 0 1 125 chain 15207 chr1 249250621 + 61721686 61722230 MER30 238 - 6 238 140757 42 3 0 63 4 0 7 325 20 100 chain 19097 chr1 249250621 + 61939294 61939547 HSMAR2 1300 - 1036 1295 129824 45 0 4 143 5 7 60 chain 4321 chr1 249250621 + 61946118 61946164 MADE1 96 + 0 46 202949 46 chain 6735 chr1 249250621 + 61955518 61955756 MER53 195 - 0 186 179432 17 1 2 15 18 0 23 102 70 5 3 0 54 chain 23066 chr1 249250621 + 61957952 61958218 AluSp 311 - 22 288 115322 266 chain 3239 chr1 249250621 + 61969953 61970025 MER3 215 + 61 142 220236 25 22 31 25 chain 396894 chr1 249250621 + 62007641 62013080 L1PB1 5432 - 22 5376 10205 6 1 0 13 1 0 19 1 0 20 1 0 6 21 19 15 23 12 4 1 0 16 2 1 42 1 0 16 2 1 53 27 20 9 1 0 24 1 0 11 1 4 175 0 5 104 4 3 34 49 16 55 0 2 54 6 7 18 4 1 669 8 5 5 0 2 209 35 13 110 3 0 463 0 1 112 36 37 57 0 4 7 4 0 96 3 0 93 0 2 6 2 0 233 2 1 9 7 0 51 1 4 725 2 0 5 5 7 50 0 1 251 20 0 7 0 1 15 1 0 53 0 5 32 9 33 191 12 10 288 1 0 59 12 12 98 1 0 185 0 2 5 5 0 345 chain 3550 chr1 249250621 + 62008305 62008345 L1PB1 5432 - 2341 2381 210144 40 chain 106262 chr1 249250621 + 62015606 62017780 L1M1 2793 - 370 2416 35191 5 0 2 92 0 3 65 15 32 119 12 9 38 4 12 7 15 0 57 12 11 54 0 2 147 27 23 73 0 1 26 0 4 86 0 5 45 0 1 40 0 5 25 0 3 162 7 0 18 4 0 71 1 0 58 0 1 8 0 4 25 0 20 60 26 25 38 0 1 39 13 10 52 1 0 8 2 0 15 18 17 20 112 77 38 125 65 9 3 0 11 6 5 4 1 0 10 195 140 7 3 0 12 1 0 5 2 1 10 2 0 8 chain 4695 chr1 249250621 + 62021672 62021809 MLT1J 494 - 344 471 198578 46 1 0 11 63 54 16 chain 9731 chr1 249250621 + 62031964 62032082 MSTB-int 1649 - 1530 1649 161938 104 0 1 14 chain 501334 chr1 249250621 + 62039054 62044953 L1PA6 6164 - 2 6160 6764 6 4 0 138 19 0 7 1 20 881 1 0 630 0 1 430 0 6 95 0 1 757 0 1 4 1 2 162 1 2 674 1 0 11 0 1 53 5 7 900 10 11 558 0 17 76 0 233 13 1 0 399 1 2 60 chain 13490 chr1 249250621 + 62101265 62101539 MER58B 340 + 64 340 146390 36 1 2 26 10 11 4 1 0 56 65 66 75 chain 6688 chr1 249250621 + 62113167 62113256 MER2 342 + 131 219 179773 21 1 0 67 chain 15661 chr1 249250621 + 62126672 62126954 THE1B 368 - 65 368 139396 63 1 0 6 11 10 11 0 4 9 0 1 7 0 2 9 14 12 55 5 37 9 14 0 68 chain 14803 chr1 249250621 + 62135867 62136107 L1PA16 3655 + 3403 3619 141927 34 0 1 140 3 0 15 16 0 4 1 0 6 5 0 16 chain 29847 chr1 249250621 + 62179552 62179866 AluYb8 318 - 4 318 85295 314 chain 74926 chr1 249250621 + 62196000 62196876 L1PA7 6471 + 5582 6461 46049 40 0 2 679 0 1 157 chain 14715 chr1 249250621 + 62201485 62203000 LTR64 526 + 0 526 142223 71 15 2 12 6 7 11 1 0 4 0 1 85 1247 271 50 2 1 11 chain 13397 chr1 249250621 + 62224806 62224990 MER30 238 + 38 238 146735 69 4 0 8 2 23 47 0 1 8 2 0 44 chain 63572 chr1 249250621 + 62266258 62267029 L1PA5 6144 - 4 776 51205 142 5 6 91 2 1 91 1 2 439 chain 25380 chr1 249250621 + 62275054 62275357 AluSp 311 - 7 310 102780 303 chain 7718 chr1 249250621 + 62282091 62282187 U6 107 + 1 100 172804 43 0 3 53 chain 50831 chr1 249250621 + 62296883 62297700 L1PA15 4387 + 3549 4349 58411 244 1 0 21 3 5 10 10 6 24 6 7 24 2 0 42 1 0 110 10 11 51 1 0 26 1 0 54 7 6 26 6 5 36 0 1 9 13 10 37 3 1 12 6 1 21 chain 8013 chr1 249250621 + 62310210 62310326 MER44A 345 + 111 233 170979 59 2 8 55 chain 3314 chr1 249250621 + 62312216 62312258 L1MB2 1706 - 19 61 218692 42 chain 12227 chr1 249250621 + 62327012 62327178 L1PA8 5853 - 0 164 151311 93 1 0 19 4 3 49 chain 43329 chr1 249250621 + 62332353 62332903 MER41A 554 - 0 554 65000 63 0 1 4 8 9 310 1 2 122 1 2 41 chain 25621 chr1 249250621 + 62334769 62335042 AluYa5 310 - 2 275 101620 273 chain 6363 chr1 249250621 + 62338006 62338085 MER84 505 + 1 80 182291 79 chain 97692 chr1 249250621 + 62350776 62351849 L1PA3long 6157 + 5072 6147 37370 315 0 2 758 chain 100194 chr1 249250621 + 62360392 62361684 THE1D-int 1627 + 0 1322 36718 38 1 0 131 0 1 235 3 26 181 0 3 350 10 13 158 7 8 178 chain 4824 chr1 249250621 + 62408636 62408758 L1MB7 1623 + 1387 1489 197084 35 1 0 7 41 23 28 1 0 9 chain 523347 chr1 249250621 + 62408812 62414895 L1PA5 6144 + 1 6144 4832 122 0 14 16 3 15 199 4 12 430 5 22 338 9 0 1144 3 1 252 0 13 1759 3 7 460 2 3 145 0 1 1035 2 0 70 0 3 82 chain 10085 chr1 249250621 + 62429293 62429435 Tigger2a 444 - 237 388 160158 5 0 3 60 6 9 27 2 5 42 chain 39392 chr1 249250621 + 62431982 62432806 MER41A 554 - 0 554 70175 57 6 17 22 308 0 27 0 1 21 0 16 59 0 7 205 1 4 118 chain 20693 chr1 249250621 + 62434230 62434477 L1PA5 6144 - 2 244 124988 7 5 0 235 chain 5041 chr1 249250621 + 62440291 62440388 LTR36 617 + 456 552 194720 17 15 16 40 6 4 19 chain 24190 chr1 249250621 + 62457786 62458079 AluSp 311 - 9 301 109273 171 1 0 121 chain 153078 chr1 249250621 + 62465883 62467572 L1PA3long 6157 - 11 1716 24219 101 0 1 708 0 9 559 0 6 321 chain 18914 chr1 249250621 + 62476124 62476382 L1MA4 2864 - 178 434 130327 12 3 0 63 0 2 110 3 2 67 chain 8313 chr1 249250621 + 62476382 62476485 THE1C 375 - 57 160 169314 103 chain 3198 chr1 249250621 + 62486429 62486486 MLT1A0 366 - 2 65 220983 34 7 13 16 chain 5587 chr1 249250621 + 62494051 62494136 L1MB3 1562 - 1160 1244 189206 56 10 9 19 chain 14732 chr1 249250621 + 62539882 62540039 L1PA4 6152 + 5994 6151 142166 157 chain 25984 chr1 249250621 + 62553565 62553862 AluSp 311 - 14 311 100077 297 chain 20894 chr1 249250621 + 62587164 62587463 AluSc8 310 + 10 299 124299 34 7 6 14 2 0 54 0 1 87 15 10 68 3 0 15 chain 24553 chr1 249250621 + 62604790 62605098 AluSg7 307 + 0 307 107236 65 8 6 61 0 1 174 chain 23933 chr1 249250621 + 62612173 62612482 AluSp 311 + 8 308 110726 116 6 4 173 7 0 7 chain 84970 chr1 249250621 + 62636648 62637639 LTR5B 1012 - 0 1012 41524 69 0 3 425 3 2 365 0 14 54 0 1 67 0 4 8 chain 26756 chr1 249250621 + 62644135 62644468 LTR14A 344 - 0 344 97147 67 2 1 19 0 3 21 3 8 54 0 4 167 chain 131472 chr1 249250621 + 62647273 62648946 HERVK14-int 1672 - 7 1667 27759 6 1 0 90 4 0 50 1 0 9 2 0 31 1 0 59 8 7 101 6 5 202 1 0 33 2 0 8 1 0 3 1 0 79 1 0 163 1 0 166 14 18 22 1 0 45 1 0 233 1 3 27 1 0 53 0 3 159 1 0 49 1 0 11 1 0 11 0 2 12 chain 28845 chr1 249250621 + 62649117 62649461 LTR14A 344 - 0 344 89687 47 0 1 41 1 0 255 chain 20652 chr1 249250621 + 62661456 62661722 AluSc8 310 + 28 298 125127 28 2 0 36 8 9 25 0 5 167 chain 22481 chr1 249250621 + 62673388 62673668 AluSp 311 - 16 300 118102 238 1 5 41 chain 29065 chr1 249250621 + 62682886 62683193 AluYb8 318 - 0 307 88698 307 chain 8165 chr1 249250621 + 62683217 62683381 L1MB2 1706 - 20 174 170139 25 2 0 50 1 0 13 1 0 15 39 33 18 chain 72771 chr1 249250621 + 62705197 62706021 L1PA5 6144 - 9 833 47139 824 chain 25506 chr1 249250621 + 62710062 62710415 THE1B 368 + 0 368 102195 44 0 15 22 1 2 83 8 6 87 7 9 25 1 0 75 chain 13420 chr1 249250621 + 62721644 62721847 MER30 238 + 0 238 146631 17 20 19 59 0 38 66 3 0 23 0 1 15 chain 22518 chr1 249250621 + 62729807 62730100 AluSp 311 + 0 297 117948 221 12 18 46 2 0 12 chain 14928 chr1 249250621 + 62754716 62754912 MER107 203 - 0 203 141550 24 0 6 38 1 2 133 chain 18698 chr1 249250621 + 62779288 62779536 L1PA8 5853 + 5608 5853 130952 67 5 4 61 2 1 19 1 0 93 chain 31640 chr1 249250621 + 62787852 62788296 MER4A1 472 - 0 472 81421 69 5 7 100 0 1 26 0 1 36 5 0 5 1 2 20 8 27 130 0 7 24 0 2 15 chain 4818 chr1 249250621 + 62831147 62831200 Tigger2 2703 - 178 231 197148 53 chain 29297 chr1 249250621 + 62837772 62838149 MER57B1 401 + 29 401 87591 138 8 0 108 0 3 123 chain 17339 chr1 249250621 + 62846952 62847152 AluY 311 + 102 302 134683 200 chain 5003 chr1 249250621 + 62894428 62894487 MLT1A 405 + 18 77 195111 59 chain 9490 chr1 249250621 + 62894521 62894689 MLT1A0 366 - 0 171 163118 105 33 37 17 1 0 12 chain 11271 chr1 249250621 + 62926029 62926221 MER2 342 + 94 295 155155 21 0 1 29 1 0 16 4 13 25 0 1 62 21 20 13 chain 185395 chr1 249250621 + 62933313 62936215 L1PB1 5432 + 2850 5391 20470 220 12 12 197 311 3 117 0 1 331 7 1 259 0 1 313 0 2 51 0 5 265 12 9 59 0 4 62 9 5 45 23 15 85 16 0 32 13 34 104 0 4 17 13 11 24 1 0 7 42 34 33 1 0 8 2 1 15 2 0 44 1 0 16 44 12 16 1 0 3 1 0 4 1 0 15 2 0 24 1 0 21 chain 122997 chr1 249250621 + 62985459 62986931 L1PA7 6471 + 4991 6466 30048 16 1 4 78 0 1 152 4 6 366 1 4 148 11 6 364 0 1 322 2 0 7 chain 43474 chr1 249250621 + 62993042 62993547 L1PA4 6152 + 5648 6140 64841 202 15 1 157 0 1 131 chain 11423 chr1 249250621 + 63016919 63017083 MER30 238 - 0 173 154592 97 6 26 17 11 0 33 chain 10360 chr1 249250621 + 63019152 63019303 AluJr4 308 - 117 267 158866 47 18 17 86 chain 327194 chr1 249250621 + 63029340 63033372 L1PA7 6471 + 2427 6464 12301 197 30 8 257 6 10 197 0 4 60 0 10 71 0 2 254 1 0 52 5 9 229 2 1 47 0 1 176 22 11 341 1 0 4 0 1 118 0 1 37 0 4 136 4 8 281 1 7 319 0 1 304 0 1 35 8 7 112 1 0 724 chain 155544 chr1 249250621 + 63033567 63036305 L1PA10 4194 + 2073 4161 23917 193 0 5 44 1 2 145 1 0 21 333 0 51 20 13 82 24 21 26 3 7 20 1 0 5 0 1 86 2 0 93 0 3 71 0 1 49 0 1 37 7 11 58 8 5 108 0 1 167 0 1 145 316 0 68 0 1 457 13 10 30 10 7 32 1 0 10 chain 50651 chr1 249250621 + 63076155 63076735 L1PA7 6471 - 17 603 58536 137 1 5 300 0 2 142 chain 2148 chr1 249250621 + 63076971 63077182 Tigger4a 237 - 0 71 237177 17 98 0 13 62 17 14 0 3 7 chain 9961 chr1 249250621 + 63078059 63078214 L1PA8 5853 + 5699 5853 160771 4 0 1 31 7 6 17 6 5 90 chain 17258 chr1 249250621 + 63101658 63101863 AluY 311 + 17 223 134898 114 1 2 90 chain 90651 chr1 249250621 + 63116099 63117131 L1PA5 6144 + 5117 6144 39407 873 21 16 138 chain 134980 chr1 249250621 + 63135377 63136926 LTR12C 1709 + 0 1709 27018 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 481 chain 160664 chr1 249250621 + 63145436 63147216 L1PA5 6144 + 4360 6144 23240 937 0 4 843 chain 30033 chr1 249250621 + 63151833 63152158 AluYb8 318 - 0 318 84705 195 7 0 123 chain 538284 chr1 249250621 + 63165076 63171049 L1PA4 6152 - 1 5986 3107 17 1 0 130 0 1 1916 1 10 33 1 0 822 0 1 1612 0 3 870 0 1 444 1 0 125 chain 320392 chr1 249250621 + 63205259 63209709 L1PB1 5432 + 1140 5424 12580 79 0 1 175 1 0 7 2 0 5 21 11 178 0 6 24 1 2 329 0 1 106 1 13 417 16 8 866 1 2 113 0 1 128 0 2 121 20 0 216 5 6 522 18 19 68 0 2 53 0 1 182 1 0 204 0 1 28 35 34 32 1 0 3 115 0 8 3 0 24 39 32 50 2 1 16 1 0 7 26 23 14 1 0 15 3 0 7 14 5 19 8 5 14 2 0 9 1 0 15 1 0 22 1 0 12 1 0 16 1 0 4 chain 6142 chr1 249250621 + 63219782 63219945 LTR12C 1709 + 982 1067 184062 36 79 1 48 chain 416692 chr1 249250621 + 63220516 63225332 HERV9-int 5642 + 0 4815 9615 6 7 0 185 0 1 279 0 2 10 0 1 311 1 0 312 4 0 508 1 0 1351 1 0 245 0 4 141 0 3 281 1 2 144 0 1 1028 chain 61065 chr1 249250621 + 63235760 63236634 L1MA3 4352 - 172 1011 52303 16 3 1 50 1 0 9 38 12 187 3 0 162 0 2 7 3 0 50 2 0 343 chain 3789 chr1 249250621 + 63267972 63268098 Tigger4a 237 - 96 222 210534 25 68 68 33 chain 206763 chr1 249250621 + 63277829 63280276 L1PA7 6471 + 3995 6467 18735 345 9 10 727 0 22 232 1 2 288 0 3 85 0 1 32 0 1 128 3 2 514 0 1 73 4 0 6 chain 6165 chr1 249250621 + 63292642 63292716 MER41B 635 - 81 155 183837 74 chain 19817 chr1 249250621 + 63307972 63308207 AluSp 311 - 12 247 127758 235 chain 26462 chr1 249250621 + 63325005 63325355 Tigger3b 1229 - 136 486 98198 319 1 0 4 4 5 22 chain 14619 chr1 249250621 + 63332595 63332767 L1PA5 6144 - 0 172 142525 172 chain 4017 chr1 249250621 + 63343423 63343467 MADE1 96 + 52 96 207114 44 chain 4751 chr1 249250621 + 63484079 63484279 MER46C 351 - 25 218 197907 53 124 117 23 chain 17321 chr1 249250621 + 63490646 63490842 L1PA4 6152 + 5947 6143 134729 196 chain 37046 chr1 249250621 + 63493158 63493675 MLT2A2 560 + 0 560 73464 145 5 4 20 12 11 128 6 38 60 0 11 119 0 1 7 0 1 15 chain 83815 chr1 249250621 + 63502624 63503559 L1PA4 6152 - 1 934 41980 779 1 0 71 1 0 83 chain 25849 chr1 249250621 + 63503935 63504245 AluY 311 + 7 311 100658 119 6 0 185 chain 20157 chr1 249250621 + 63519731 63519978 AluSc5 308 - 24 273 126652 13 0 2 234 chain 46374 chr1 249250621 + 63523214 63523928 L1MA2 4263 + 3418 4110 61704 16 0 1 72 5 0 73 10 6 76 1 0 146 3 0 150 42 40 60 15 8 39 1 0 5 chain 29879 chr1 249250621 + 63524447 63524763 AluYb8 318 - 2 318 85169 316 chain 14078 chr1 249250621 + 63563624 63563781 L1PA2 6032 + 5875 6032 144297 157 chain 7672 chr1 249250621 + 63571998 63572216 MER20 218 - 2 217 173088 39 13 14 31 10 9 13 39 42 13 5 0 5 2 0 15 7 8 26 chain 23330 chr1 249250621 + 63627944 63628206 L1PA4 6152 + 5886 6151 114027 90 0 2 165 0 1 7 chain 14537 chr1 249250621 + 63635003 63635181 Tigger3c 601 + 359 537 142780 178 chain 22448 chr1 249250621 + 63643483 63643761 AluSp 311 + 12 291 118258 22 4 3 38 0 1 139 0 1 75 chain 12923 chr1 249250621 + 63644316 63644666 L1PB1 5432 + 5039 5323 148539 40 1 4 20 2 3 10 49 0 22 8 6 12 18 12 38 1 0 5 0 1 8 18 16 45 1 0 15 2 0 6 2 1 8 7 0 12 chain 3273 chr1 249250621 + 63655044 63655082 HY3 101 - 1 39 219501 38 chain 23057 chr1 249250621 + 63672932 63673226 AluSp 311 - 18 311 115369 165 7 6 122 chain 73229 chr1 249250621 + 63680492 63681413 L1PA7 6471 + 5525 6469 46912 63 0 13 597 7 22 101 4 1 137 2 0 10 chain 34616 chr1 249250621 + 63685862 63686470 L1MA5A 2387 + 1534 2074 76733 25 0 1 4 6 5 73 4 3 38 37 0 18 14 16 23 21 1 95 21 7 172 0 4 9 6 5 36 1 0 5 chain 24277 chr1 249250621 + 63687720 63688000 AluSp 311 + 0 283 108794 91 0 3 189 chain 12429 chr1 249250621 + 63703346 63703520 MLT2A2 560 + 119 310 150536 72 10 11 69 0 16 23 chain 76642 chr1 249250621 + 63705411 63706226 L1HS 6032 - 11 826 44833 815 chain 179911 chr1 249250621 + 63706226 63708148 L1HS 6032 + 3296 5218 21001 1922 chain 22099 chr1 249250621 + 63715995 63716290 AluSp 311 - 1 311 119789 33 0 2 143 2 0 75 4 5 16 0 14 22 chain 22594 chr1 249250621 + 63758309 63758604 AluY 311 + 0 299 117605 77 0 6 40 5 4 59 2 0 57 0 1 55 chain 3277 chr1 249250621 + 63777163 63777208 MER33 330 + 66 129 219413 9 0 18 36 chain 3561 chr1 249250621 + 63799430 63799470 U7 62 + 1 41 214303 40 chain 22187 chr1 249250621 + 63799668 63799957 AluSq2 311 - 12 300 119416 145 0 3 7 13 10 9 1 0 114 chain 6369 chr1 249250621 + 63802520 63802933 MLT1A0 366 + 9 110 182252 44 309 2 6 6 0 30 0 1 18 chain 19344 chr1 249250621 + 63817147 63817371 L1PA7 6471 - 11 241 129095 156 0 6 68 chain 72268 chr1 249250621 + 63849913 63853680 L1MA3 4352 - 863 4026 47348 92 12 10 98 4 9 47 0 1 200 0 1 27 3 14 102 0 1 66 0 1 8 1 0 177 4 5 34 0 1 5 1 0 7 0 9 31 6 8 16 2657 2023 71 0 1 98 chain 53661 chr1 249250621 + 63886967 63887687 L1PA7 6471 + 5784 6457 56576 160 51 0 186 0 1 4 1 0 138 7 9 15 1 3 15 0 1 27 1 0 114 chain 63320 chr1 249250621 + 63913324 63914002 L1PA3long 6157 + 5471 6149 51310 678 chain 5617 chr1 249250621 + 63930269 63930361 L1MC4 1079 + 439 557 188907 31 1 0 11 5 32 44 chain 43309 chr1 249250621 + 63935463 63935974 MER9a2 513 + 0 513 65032 42 1 2 226 19 20 223 chain 78242 chr1 249250621 + 63938104 63939009 SVA_D 2077 + 0 898 44394 19 1 0 6 1 0 6 1 0 6 12 0 10 0 12 149 5 1 689 chain 36993 chr1 249250621 + 63939046 63939586 SVA_F 1814 + 664 1291 73519 41 6 46 25 1 0 12 27 59 9 1 0 26 47 0 65 0 15 127 0 49 119 0 1 16 1 0 17 chain 2113 chr1 249250621 + 63939131 63939158 SVA_F 1814 + 868 896 98839 12 0 1 15 chain 2426 chr1 249250621 + 63939194 63939225 SVA_F 1814 + 997 1028 98839 31 chain 91146 chr1 249250621 + 63939604 63940572 SVA_E 1901 + 923 1894 39251 723 0 3 245 chain 11567 chr1 249250621 + 63968053 63968186 THE1A 353 - 0 133 154037 133 chain 343165 chr1 249250621 + 63968200 63972014 L1PA4 6152 - 14 3832 11807 258 0 1 232 1 0 339 0 4 189 1 0 759 0 2 415 0 1 884 2 0 734 chain 9445 chr1 249250621 + 63981653 63982505 L1PB4 2604 + 2339 2576 163337 31 0 1 15 2 0 32 55 54 14 612 0 56 16 15 19 chain 7733 chr1 249250621 + 63982973 63983059 L1PA3long 6157 + 6071 6157 172694 86 chain 3222 chr1 249250621 + 64002404 64002441 U7 62 - 25 62 220541 37 chain 22885 chr1 249250621 + 64019026 64019298 AluSc 308 - 25 298 116163 53 1 2 218 chain 4878 chr1 249250621 + 64021346 64021404 L1MA8 2339 + 2010 2068 196503 58 chain 11701 chr1 249250621 + 64025448 64025614 L1MC2 1988 - 1397 1564 153461 107 17 18 42 chain 32417 chr1 249250621 + 64030049 64030588 L1PA13 3608 + 3039 3546 80173 89 1 0 27 6 5 113 2 0 63 1 0 26 1 2 27 3 0 5 2 0 47 2 0 5 2 0 20 1 0 20 6 3 15 5 0 12 1 0 6 7 1 10 4 1 10 chain 23635 chr1 249250621 + 64052017 64052378 THE1C 375 - 0 375 112390 132 52 64 54 3 0 80 0 5 40 chain 26127 chr1 249250621 + 64124445 64124812 THE1B 368 - 0 368 99495 75 1 0 5 11 12 74 1 0 28 3 2 130 0 5 24 2 0 13 chain 3020 chr1 249250621 + 64127040 64127080 MIR 256 - 96 136 224599 40 chain 4391 chr1 249250621 + 64167442 64167492 MIRc 230 - 105 155 202058 50 chain 23303 chr1 249250621 + 64186578 64187299 L1MA5A 2387 - 82 461 114185 10 1 0 61 341 3 6 0 1 9 3 0 34 5 0 26 2 0 6 2 10 32 1 0 17 8 9 12 1 0 35 2 1 107 chain 33448 chr1 249250621 + 64188419 64188873 MLT2A1 477 - 0 477 78491 36 33 57 178 3 5 30 3 0 171 chain 12324 chr1 249250621 + 64190820 64191013 MER31A 484 + 40 243 150917 84 18 35 16 7 0 68 chain 4873 chr1 249250621 + 64197142 64197217 MIRb 242 + 105 179 196556 37 0 4 6 5 0 27 chain 30350 chr1 249250621 + 64200986 64201366 L1MA3 4352 - 956 1337 83776 76 0 1 304 chain 12254 chr1 249250621 + 64204213 64204348 MLT2A2 560 - 417 552 151191 135 chain 13422 chr1 249250621 + 64204671 64204836 MLT2A2 560 - 244 409 146618 165 chain 4379 chr1 249250621 + 64232803 64233154 LTR41B 718 + 339 712 202210 17 150 148 24 71 118 10 26 0 9 9 12 35 chain 13093 chr1 249250621 + 64234100 64234304 L1PA8 5853 - 0 201 147871 92 3 2 18 2 1 45 14 13 30 chain 4954 chr1 249250621 + 64259002 64259068 L1MA4 2864 + 2746 2810 195656 20 2 0 44 chain 3598 chr1 249250621 + 64262029 64262068 MER5A1 166 + 41 80 213688 39 chain 6368 chr1 249250621 + 64270298 64270374 L1PA7 6471 - 2 78 182256 76 chain 33792 chr1 249250621 + 64280036 64280524 MER1A 529 - 0 492 77951 47 32 35 5 1 0 244 0 2 100 0 4 6 14 10 39 chain 25760 chr1 249250621 + 64281915 64282275 THE1B 368 + 0 366 101043 15 2 0 21 3 8 128 2 1 21 4 0 112 5 13 47 chain 19637 chr1 249250621 + 64295988 64296343 THE1D 372 - 15 372 128292 44 4 2 39 0 1 44 61 67 14 17 14 132 chain 121342 chr1 249250621 + 64296350 64297968 THE1D-int 1627 - 7 1612 30581 37 0 1 6 1 0 226 5 4 152 2 0 5 7 2 161 0 2 5 2 0 9 1 2 192 0 1 86 21 16 155 3 0 207 7 8 328 chain 6432 chr1 249250621 + 64298137 64298207 THE1D 372 - 302 372 181765 70 chain 234690 chr1 249250621 + 64390683 64393227 L1PA2 6032 - 0 2550 17048 1392 0 6 1152 chain 17238 chr1 249250621 + 64395636 64395857 L1PA7 6471 - 3 220 134960 7 7 0 6 0 3 201 chain 26809 chr1 249250621 + 64424660 64425026 THE1C 375 - 0 375 96944 25 1 0 133 1 5 14 9 7 144 0 8 39 chain 24667 chr1 249250621 + 64442549 64442929 THE1C 375 - 0 375 106628 25 1 0 119 47 45 75 4 3 50 1 0 58 chain 6900 chr1 249250621 + 64451138 64451263 Tigger4b 360 + 37 174 178196 13 20 21 49 3 14 40 chain 25888 chr1 249250621 + 64489487 64489864 THE1D 372 + 0 372 100488 43 12 0 107 7 8 24 0 12 7 13 7 164 chain 27995 chr1 249250621 + 64491019 64491677 L1PB1 5432 + 4860 5422 93014 38 7 5 54 1 12 82 13 12 40 3 2 12 71 0 21 1 0 9 1 0 9 24 18 44 2 1 17 1 0 45 1 0 6 33 21 17 18 15 6 2 0 20 5 4 21 1 0 13 1 0 14 1 0 4 chain 7673 chr1 249250621 + 64494565 64494661 U6 107 - 0 96 173081 96 chain 3727 chr1 249250621 + 64513868 64513911 MER3 215 + 47 90 211512 43 chain 6766 chr1 249250621 + 64532312 64532394 HY3 101 - 0 82 179194 82 chain 192952 chr1 249250621 + 64570196 64572523 L1PA8A 6298 - 7 2342 19776 105 0 1 611 1 4 77 1 4 341 3 1 211 0 1 116 2 0 504 0 1 18 0 1 9 1 0 99 0 1 37 0 2 191 chain 20370 chr1 249250621 + 64631932 64632228 L1PA13 3608 - 120 416 125998 22 1 0 18 9 5 25 1 12 10 2 0 5 1 0 55 1 0 63 2 0 81 chain 25276 chr1 249250621 + 64634911 64635257 THE1B 368 - 0 368 103340 44 10 18 134 7 6 101 0 9 6 0 6 44 chain 123734 chr1 249250621 + 64635262 64636816 THE1B-int 1605 - 5 1605 29800 252 2 0 115 23 40 533 0 4 171 26 53 432 chain 25138 chr1 249250621 + 64636818 64637161 THE1B 368 - 2 368 104082 47 5 13 134 7 6 63 0 1 43 0 15 44 chain 159160 chr1 249250621 + 64666175 64667951 SVA_E 1901 + 0 1883 23445 146 1 0 377 40 0 98 0 40 156 1 0 26 1 0 51 0 33 168 1 0 60 0 78 650 chain 6637 chr1 249250621 + 64690457 64690540 L1MB2 1706 + 1611 1694 180186 83 chain 58122 chr1 249250621 + 64705050 64705719 L1PA5 6144 - 1 665 53915 8 5 0 69 0 1 425 1 0 161 chain 48696 chr1 249250621 + 64716200 64716748 L1PA4 6152 + 5595 6143 59963 548 chain 338148 chr1 249250621 + 64718423 64722877 L1PA11 4918 + 8 4578 11949 7 1 0 27 2 0 29 11 8 26 11 10 13 2 0 52 1 0 33 2 0 5 2 1 559 10 12 591 0 2 30 0 2 363 0 3 32 6 7 92 21 0 163 1 3 135 0 1 19 1 0 6 3 2 19 0 4 257 0 4 22 9 7 80 2 0 84 2 0 187 0 158 159 6 0 151 1 0 70 0 1 71 0 2 169 0 1 493 1 6 90 4 11 44 4 5 57 2 1 13 3 0 6 0 1 52 19 8 14 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 111598 chr1 249250621 + 64724010 64725286 L1PA6 6164 - 3 1279 33780 164 1 0 4 1 2 1106 chain 562063 chr1 249250621 + 64739111 64745266 L1PA3long 6157 + 0 6157 293 3105 0 1 1283 0 1 1767 chain 25437 chr1 249250621 + 64764604 64764887 L1PA5 6144 - 5 288 102513 283 chain 12928 chr1 249250621 + 64766579 64766733 L1PA6 6164 + 6012 6162 148512 144 4 0 6 chain 24127 chr1 249250621 + 64773383 64773668 AluSg7 307 - 12 296 109603 163 1 0 121 chain 4612 chr1 249250621 + 64778110 64778307 MLT1J1 437 - 143 344 199498 50 129 133 18 chain 27980 chr1 249250621 + 64779308 64779621 AluYk4 311 + 0 311 93072 133 2 0 178 chain 22936 chr1 249250621 + 64795978 64796236 AluSp 311 - 53 311 115922 258 chain 2909 chr1 249250621 + 64805051 64805122 MADE2 80 - 5 77 226891 19 11 0 8 10 22 23 chain 38336 chr1 249250621 + 64815625 64816077 LTR7 482 - 0 482 71671 190 7 38 105 2 0 132 1 2 15 chain 299858 chr1 249250621 + 64817338 64820998 HERVH-int 3825 - 0 3825 13432 320 0 1 166 12 222 1400 4 31 462 15 0 444 1 0 49 2 1 11 0 20 45 23 0 17 0 17 15 7 1 14 4 0 9 66 1 9 1 0 35 5 0 312 0 11 212 chain 4295 chr1 249250621 + 64820360 64820424 HERVH-int 3825 - 3246 3304 202426 9 1 0 36 5 0 13 chain 39254 chr1 249250621 + 64821000 64821444 LTR7 482 - 0 482 70383 188 0 31 203 0 7 53 chain 68605 chr1 249250621 + 64838845 64839586 L1PA3long 6157 + 5416 6157 48982 741 chain 103756 chr1 249250621 + 64842575 64844081 L1MA2 4263 - 171 1686 35783 24 18 11 91 21 14 95 2 1 44 1 0 48 0 2 29 0 1 4 1 0 14 0 3 49 1 0 76 11 7 5 1 0 228 1 0 350 7 16 67 0 4 33 0 13 21 0 5 115 2 0 25 12 7 11 0 2 32 3 1 40 0 3 24 chain 37054 chr1 249250621 + 64849566 64850058 Tigger1 2417 + 469 976 73451 86 6 10 240 0 2 55 7 13 91 0 3 7 chain 4077 chr1 249250621 + 64850095 64850141 U7 62 - 15 61 206225 46 chain 62635 chr1 249250621 + 64854677 64855393 L1PA5 6144 - 6 722 51615 716 chain 150517 chr1 249250621 + 64879955 64882532 SVA_D 2077 + 58 2077 24535 598 39 0 71 0 1 92 491 235 164 49 0 84 0 98 475 313 0 201 chain 32462 chr1 249250621 + 64880776 64881205 SVA_F 1814 + 738 1274 80092 11 0 40 86 0 118 135 1 0 58 51 1 87 chain 3350 chr1 249250621 + 64881081 64881118 SVA_F 1814 + 861 898 187195 37 chain 3436 chr1 249250621 + 64881410 64881459 SVA_D 2077 + 1043 1092 80434 5 1 0 5 1 2 37 chain 13969 chr1 249250621 + 64882575 64882731 L1PA4 6152 + 5995 6151 144680 156 chain 29699 chr1 249250621 + 64897115 64897425 AluYb8 318 - 8 318 85836 310 chain 25066 chr1 249250621 + 64904112 64904403 AluYk4 311 + 8 308 104477 166 0 9 125 chain 45761 chr1 249250621 + 64926992 64927497 L1PA3long 6157 + 5652 6157 62264 505 chain 27870 chr1 249250621 + 64943319 64943616 AluYb8 318 - 21 318 93457 297 chain 9315 chr1 249250621 + 64983982 64984095 L1PA8 5853 - 0 112 163990 93 1 0 19 chain 21376 chr1 249250621 + 65022566 65022819 AluY 311 + 47 298 122596 62 1 0 23 0 1 67 2 0 98 chain 24061 chr1 249250621 + 65034589 65034903 AluSp 311 - 12 311 109977 6 2 0 7 13 0 286 chain 13059 chr1 249250621 + 65049353 65049651 THE1B 368 - 62 368 147999 61 4 3 12 47 55 6 1 0 48 55 57 64 chain 28374 chr1 249250621 + 65075539 65075917 THE1C 375 - 0 375 91682 26 4 0 153 11 8 49 1 5 134 chain 4806 chr1 249250621 + 65079089 65079150 Tigger1 2417 + 2295 2356 197302 61 chain 8835 chr1 249250621 + 65149726 65149837 Tigger3b 1229 + 56 543 166467 52 0 376 59 chain 3533 chr1 249250621 + 65154802 65154841 5S 121 - 30 69 214821 39 chain 34168 chr1 249250621 + 65168089 65168665 L1MA3 4352 - 0 551 77393 18 14 14 6 1 0 26 1 0 5 2 1 22 2 0 6 0 1 68 6 5 12 1 2 39 57 36 290 chain 28504 chr1 249250621 + 65176580 65176880 AluYk11 308 - 8 308 91173 300 chain 4864 chr1 249250621 + 65194886 65194941 LTR16B1 483 - 57 112 196647 55 chain 48740 chr1 249250621 + 65206283 65206857 L1PA4 6152 + 5540 6135 59919 129 0 18 9 0 1 307 1 2 32 0 1 96 chain 163333 chr1 249250621 + 65238875 65240838 L1PA6 6164 - 2 1978 22903 144 4 7 105 8 12 578 0 4 39 2 0 71 7 9 263 9 10 30 0 1 703 chain 77941 chr1 249250621 + 65248473 65249403 L1PA6 6164 - 56 977 44552 54 9 10 427 1 0 259 11 0 42 0 4 39 2 0 86 chain 13204 chr1 249250621 + 65249407 65249555 L1PA6 6164 + 5048 5197 147447 91 0 1 57 chain 58865 chr1 249250621 + 65263607 65264237 L1PA2 6032 - 2 632 53479 630 chain 12102 chr1 249250621 + 65264943 65265108 L1MA5 2750 - 138 307 151788 4 1 0 44 1 0 30 0 6 85 chain 106616 chr1 249250621 + 65282368 65283594 L1PA5 6144 + 4914 6143 35088 292 0 1 355 6 7 431 1 2 141 chain 5093 chr1 249250621 + 65340115 65340234 Tigger2b_Pri 1066 + 925 1043 194156 45 51 50 23 chain 23133 chr1 249250621 + 65353890 65354152 AluSc 308 - 36 298 114982 262 chain 56590 chr1 249250621 + 65384701 65385349 L1PA5 6144 - 0 650 54789 603 0 2 45 chain 118630 chr1 249250621 + 65395417 65396838 L1PA7 6471 + 5012 6467 31564 321 1 0 18 0 31 228 5 8 83 4 3 126 0 1 11 9 10 615 chain 4494 chr1 249250621 + 65402546 65402612 MADE2 80 + 1 68 200849 41 3 4 22 chain 26112 chr1 249250621 + 65423346 65423640 AluYk4 311 + 1 295 99569 294 chain 33144 chr1 249250621 + 65446271 65446667 L1PA4 6152 - 13 409 78995 100 0 1 28 1 4 6 1 0 4 2 0 75 1 0 178 chain 12648 chr1 249250621 + 65456903 65457060 MLT1B 390 - 0 157 149646 157 chain 24217 chr1 249250621 + 65464263 65464615 THE1B 368 + 0 368 109117 44 11 40 7 10 0 81 2 1 117 8 6 72 chain 4191 chr1 249250621 + 65488679 65488727 U6 107 - 29 77 204666 48 chain 8519 chr1 249250621 + 65507833 65507941 MER2 342 + 138 246 168193 108 chain 23360 chr1 249250621 + 65518213 65518479 AluY 311 + 0 265 113868 37 1 0 228 chain 25865 chr1 249250621 + 65537330 65537621 AluY 311 + 0 287 100585 126 4 0 161 chain 23977 chr1 249250621 + 65537688 65537979 AluSc 308 + 0 297 110460 72 0 6 219 chain 5423 chr1 249250621 + 65560864 65560959 L1M2 1805 - 291 382 190769 53 14 10 28 chain 10645 chr1 249250621 + 65577510 65577657 MSTB-int 1649 - 1481 1629 157624 64 4 5 79 chain 306502 chr1 249250621 + 65587860 65591390 L1PA6 6164 - 8 3539 13154 658 0 4 155 0 1 969 0 4 52 14 0 1223 1 11 15 11 9 298 2 0 132 chain 25483 chr1 249250621 + 65594710 65595061 THE1C 375 - 0 346 102304 25 1 0 151 21 19 60 3 0 78 0 1 12 chain 26054 chr1 249250621 + 65602943 65603351 LTR7B 505 + 0 493 99811 28 0 11 69 0 10 66 35 11 8 0 88 74 1 0 23 0 1 52 14 14 38 chain 31804 chr1 249250621 + 65604016 65604412 MER51B 395 - 0 395 81161 150 1 0 245 chain 80712 chr1 249250621 + 65605482 65606445 LTR5_Hs 974 + 4 974 43301 284 0 1 422 0 2 106 8 15 37 2 0 41 1 0 62 chain 29348 chr1 249250621 + 65611121 65611519 LTR7B 505 + 0 505 87305 12 0 1 81 0 3 8 0 10 60 0 93 12 0 2 79 6 5 73 13 12 54 chain 5100 chr1 249250621 + 65630035 65630094 MER57A1 433 - 373 432 194088 59 chain 25458 chr1 249250621 + 65652760 65653054 AluYc3 301 + 0 295 102423 113 2 3 179 chain 30163 chr1 249250621 + 65768202 65768517 AluYb8 318 - 3 318 84300 315 chain 26806 chr1 249250621 + 65801728 65802107 THE1C 375 - 0 375 96956 25 1 0 30 1 0 144 1 0 5 19 20 11 0 1 17 3 0 122 chain 5894 chr1 249250621 + 65833632 65833694 L1PA4 6152 - 85 147 186237 62 chain 3004 chr1 249250621 + 65862238 65862273 L2a 937 + 728 763 224958 35 chain 6594 chr1 249250621 + 65881508 65881625 U2 167 + 6 123 180501 14 20 21 58 1 0 24 chain 23826 chr1 249250621 + 65909639 65909892 L1HS 6032 - 0 253 111328 253 chain 547332 chr1 249250621 + 65915962 65921990 L1PA3long 6157 - 1 6157 1790 3466 1 0 35 1 0 1614 0 1 136 0 128 623 0 1 152 chain 509473 chr1 249250621 + 65927685 65933855 L1PA6 6164 - 8 6164 6207 111 18 8 81 0 3 121 0 1 26 2 0 288 0 1 216 0 4 402 27 0 561 1 0 883 2 0 208 0 4 904 0 1 366 3 4 273 1 0 157 1 2 269 11 7 119 0 1 15 0 1 295 0 17 238 3 2 118 8 0 39 20 26 130 3 4 4 1 0 203 0 1 42 chain 40386 chr1 249250621 + 65986257 65986764 MER9a3 513 - 0 513 68761 75 4 5 26 0 2 294 10 11 80 0 2 18 chain 17276 chr1 249250621 + 65986764 65986990 MER75 514 + 279 514 134843 41 8 17 177 chain 45726 chr1 249250621 + 65996001 65996551 MER41A 554 - 0 554 62290 145 0 4 405 chain 90378 chr1 249250621 + 66008146 66010376 L1PA7 6471 - 1 2256 5669 12 2 0 446 0 2 307 1 0 82 1 0 142 6 1 345 4 5 31 0 1 146 2 3 187 0 25 398 0 4 118 chain 559429 chr1 249250621 + 66010491 66016651 L1PA3long 6157 - 0 6157 392 2152 0 2 2466 6 2 1203 1 0 332 chain 170218 chr1 249250621 + 66016654 66020854 L1PA7 6471 - 2256 6471 5669 262 1 2 195 0 5 13 0 1 184 0 4 782 0 2 129 3 0 59 17 10 618 0 1 197 0 1 306 0 12 159 1 2 413 5 4 11 5 0 125 9 10 127 0 4 105 0 3 5 0 1 4 1 0 17 6 2 37 1 0 150 25 25 228 chain 559259 chr1 249250621 + 66024232 66030259 L1PA2 6032 - 1 6029 400 5548 0 1 479 chain 47851 chr1 249250621 + 66034038 66034776 L1PB4 2604 - 81 777 60589 137 71 26 380 17 18 27 8 10 98 chain 10802 chr1 249250621 + 66039974 66040091 L1PA4 6152 + 6035 6152 156975 117 chain 36861 chr1 249250621 + 66043494 66043937 L1PA7 6471 - 1 446 73716 240 3 5 200 chain 34483 chr1 249250621 + 66087329 66087793 LTR19A 502 - 0 502 76938 81 0 2 28 2 1 149 13 10 21 4 41 14 0 3 152 chain 21096 chr1 249250621 + 66095872 66096105 SVA_D 2077 + 1837 2071 123562 4 0 1 229 chain 30853 chr1 249250621 + 66108889 66109321 LTR7 482 - 0 482 82763 176 0 1 9 0 31 31 1 0 5 6 18 43 23 30 138 chain 252355 chr1 249250621 + 66109866 66113283 HERVH-int 3825 - 828 3825 16110 548 0 1 150 0 1 195 12 13 373 3 31 462 24 0 423 4 0 21 1 0 49 2 1 9 21 0 39 26 5 18 4 3 24 3 0 13 1 0 14 51 1 14 4 0 9 1 0 10 1 0 38 318 0 532 chain 2174 chr1 249250621 + 66112315 66112341 HERVH-int 3825 - 3170 3196 236890 26 chain 4937 chr1 249250621 + 66112438 66112536 HERVH-int 3825 - 3293 3389 195860 10 22 21 13 1 0 52 chain 3442 chr1 249250621 + 66112586 66112624 HERVH-int 3825 - 3255 3293 216351 38 chain 26796 chr1 249250621 + 66113285 66113717 LTR7 482 - 0 482 96992 176 0 1 9 109 158 138 chain 522059 chr1 249250621 + 66117366 66123766 L1PA7 6471 + 0 6470 4951 688 8 9 674 14 16 67 0 11 736 0 1 318 0 2 115 1 2 251 0 4 532 0 1 113 1 8 200 4 7 80 0 1 164 6 7 302 0 1 264 1 0 4 0 1 90 7 15 271 1 0 230 1 0 353 0 2 82 3 0 327 2 3 128 0 1 55 0 1 62 0 19 145 0 15 80 6 0 7 2 0 5 chain 130727 chr1 249250621 + 66136930 66138369 L1PA3long 6157 + 4709 6147 27921 260 3 2 1176 chain 35482 chr1 249250621 + 66144951 66145401 L1PB3 3668 - 1367 1822 75582 187 4 0 158 0 9 101 chain 319876 chr1 249250621 + 66148106 66151967 L1P2 5180 - 488 5178 12602 328 0 4 868 5 787 370 11 8 136 7 0 159 0 1 102 0 2 321 0 1 224 0 1 367 0 16 42 0 25 137 1 0 6 1 0 272 1 0 8 1 0 258 3 2 95 0 12 138 chain 27012 chr1 249250621 + 66174359 66174648 AluYk11 308 - 1 290 96249 289 chain 9808 chr1 249250621 + 66175683 66175843 L1PA8 5853 - 0 165 161552 46 6 12 35 1 0 19 2 1 35 2 3 14 chain 64348 chr1 249250621 + 66182693 66183814 L1M1 2793 - 1047 2132 50864 75 1 0 40 0 2 73 1 4 15 10 9 127 6 7 77 1 2 6 1 0 25 22 14 19 4 0 72 1 0 94 0 1 55 0 1 21 9 8 92 17 14 54 88 80 14 9 5 11 40 27 41 chain 24912 chr1 249250621 + 66197287 66197587 AluYk4 311 + 3 298 105270 124 5 0 171 chain 501723 chr1 249250621 + 66203556 66210355 L1PA7 6471 - 6 6468 6741 21 0 1 4 2 1 112 6 5 182 3 4 514 1 0 376 0 9 171 0 1 108 2 1 83 4 0 201 0 1 167 9 1 9 340 0 550 24 13 100 0 1 274 2 6 189 2 1 5 0 1 384 0 12 277 0 1 38 0 2 118 0 2 393 1 2 19 5 7 13 0 1 74 8 9 720 0 1 31 9 14 13 0 1 502 44 42 263 36 11 85 4 5 192 0 9 109 chain 7226 chr1 249250621 + 66211222 66211346 THE1D 372 + 246 372 175911 17 0 1 41 0 5 4 5 0 18 9 10 30 chain 9703 chr1 249250621 + 66215254 66215382 L1PA8 5853 + 5727 5853 162076 13 2 1 19 1 0 93 chain 28841 chr1 249250621 + 66231379 66231744 THE1C 375 - 0 375 89712 47 0 8 138 0 2 157 1 0 4 0 1 18 chain 63176 chr1 249250621 + 66243728 66244410 L1PA2 6032 + 5340 6021 51366 666 1 0 15 chain 203885 chr1 249250621 + 66246128 66249272 L1PB1 5432 + 2342 5423 18933 116 5 2 40 13 0 28 1 5 54 3 8 225 4 0 22 5 4 71 0 2 206 1 2 85 8 9 66 1 0 237 7 0 6 0 7 89 2 5 72 16 15 41 31 26 146 36 27 34 1 0 223 1 0 24 7 8 37 10 8 241 0 1 92 10 0 75 0 2 109 0 1 290 1 2 9 3 0 24 1 0 8 1 0 4 25 19 51 3 2 15 9 8 13 109 92 20 1 0 22 1 0 12 1 0 14 1 0 5 chain 7719 chr1 249250621 + 66254499 66254590 L1PA2 6032 - 11 102 172799 91 chain 30305 chr1 249250621 + 66263922 66264240 AluYb8 318 - 0 318 83903 318 chain 12556 chr1 249250621 + 66280750 66280902 L1PA3long 6157 - 7 159 150020 115 0 1 32 1 0 4 chain 3379 chr1 249250621 + 66292919 66292962 L1MCa 1829 + 572 615 217508 43 chain 60215 chr1 249250621 + 66304971 66305691 L1PA7 6471 - 18 736 52720 338 7 5 375 chain 43902 chr1 249250621 + 66321886 66322483 L1PA8 5853 - 0 618 64331 93 1 0 13 0 22 19 1 2 4 0 2 10 3 1 8 1 0 71 2 0 31 0 1 12 2 1 42 4 5 247 0 1 33 chain 397670 chr1 249250621 + 66325727 66330896 L1PA8 5853 - 0 5803 10179 92 2 1 17 1 0 41 24 23 71 2 0 46 1 0 7 11 12 532 3 1 565 0 1 110 1 0 9 3 0 5 0 3 311 1 0 54 6 7 316 6 7 5 1 0 394 2 1 263 11 15 73 0 1 22 0 45 80 2 0 173 10 9 470 3 4 47 1 2 63 6 7 31 0 7 87 0 636 401 0 3 116 0 1 15 0 6 11 10 1 42 1 0 283 18 6 194 49 13 13 1 0 10 2 0 22 chain 58658 chr1 249250621 + 66339549 66340185 L1PA2 6032 - 1453 2088 53376 6 1 0 629 chain 133360 chr1 249250621 + 66340185 66341645 L1PA2 6032 + 4574 6030 27355 358 4 0 1098 chain 137140 chr1 249250621 + 66342474 66344580 L1PA8 5853 + 4085 5853 26611 21 0 1 36 3 0 197 5 4 64 0 2 161 2 1 45 332 0 467 1 4 476 1 0 44 2 0 71 24 22 39 2 1 19 2 1 92 chain 115901 chr1 249250621 + 66348804 66350087 L1PA5 6144 - 1465 2748 32389 1283 chain 129901 chr1 249250621 + 66350087 66351538 L1PA5 6144 + 4677 6128 28106 1451 chain 21149 chr1 249250621 + 66359011 66359384 L1PB2 3958 + 3417 3763 123375 14 6 2 5 2 0 13 2 0 59 30 4 31 6 12 25 0 1 35 1 0 63 2 1 25 4 0 32 0 6 18 chain 29350 chr1 249250621 + 66386642 66386950 AluYa5 310 - 2 310 87294 308 chain 28389 chr1 249250621 + 66389760 66390056 AluYa5 310 - 14 310 91625 296 chain 201182 chr1 249250621 + 66393222 66395666 HERVL-int 5654 - 3178 5654 19124 97 0 1 22 12 23 204 0 8 191 0 1 642 0 1 293 0 4 439 0 3 10 0 3 534 chain 27851 chr1 249250621 + 66395679 66396058 MLT2A1 477 - 13 477 93521 29 0 81 30 1 0 150 1 5 26 0 1 14 6 7 7 1 0 114 chain 42357 chr1 249250621 + 66396058 66396604 MSTA-int 1630 + 1086 1630 66209 111 15 14 304 1 0 115 chain 31382 chr1 249250621 + 66413964 66414388 MLT2A1 477 - 0 477 81849 23 3 51 9 1 0 70 1 0 151 1 5 29 0 1 47 0 1 68 1 2 20 chain 189271 chr1 249250621 + 66431455 66433714 L1PA7 6471 + 4183 6470 20121 666 0 1 300 11 22 450 0 2 185 6 5 121 11 28 388 0 1 107 2 0 7 1 0 4 chain 27178 chr1 249250621 + 66472252 66472593 THE1C 375 + 0 342 95671 113 0 1 228 chain 236787 chr1 249250621 + 66486000 66488718 L1PA5 6144 - 1 2729 16940 160 2 1 1150 0 5 482 0 4 231 0 2 433 1 0 173 1 2 85 chain 124756 chr1 249250621 + 66493149 66494720 THE1A-int 1579 - 7 1579 29462 321 11 14 84 1 0 497 20 20 258 1 0 378 chain 7405 chr1 249250621 + 66516821 66516900 L1PA4 6152 + 6072 6151 174742 79 chain 14949 chr1 249250621 + 66527418 66527605 L1PA8 5853 + 5669 5853 141474 21 1 0 53 1 0 17 1 0 93 chain 70855 chr1 249250621 + 66532744 66533548 L1PA4 6152 - 372 1170 47987 364 0 1 342 7 0 91 chain 21507 chr1 249250621 + 66533548 66533786 L1PA4 6152 + 5912 6151 122119 96 0 1 142 chain 4701 chr1 249250621 + 66540973 66541085 L1MB5 1630 - 441 550 198520 19 1 0 23 34 32 35 chain 36856 chr1 249250621 + 66553304 66553711 L1PA3long 6157 + 5750 6157 73725 407 chain 4297 chr1 249250621 + 66557893 66557959 MER6C 202 + 0 69 203259 16 4 7 46 chain 5932 chr1 249250621 + 66560157 66560229 U4 144 - 72 144 185854 72 chain 120204 chr1 249250621 + 66566516 66567882 L1PA5 6144 - 0 1366 30981 1366 chain 306171 chr1 249250621 + 66569623 66573010 L1PA3long 6157 - 0 3391 13165 1788 0 1 470 0 2 786 0 1 343 chain 26751 chr1 249250621 + 66583556 66583858 L1PA5 6144 - 561 863 97158 302 chain 49280 chr1 249250621 + 66583858 66584408 L1PA5 6144 + 5588 6143 59527 382 0 5 168 chain 16413 chr1 249250621 + 66591145 66591386 MER6A 605 + 357 605 137174 36 4 0 72 8 19 121 chain 28934 chr1 249250621 + 66595058 66595371 AluYa5 310 + 0 310 89305 132 3 0 178 chain 11960 chr1 249250621 + 66628227 66628449 Tigger4a 237 - 0 207 152363 64 7 6 15 0 1 19 10 17 6 7 0 69 15 0 10 chain 535941 chr1 249250621 + 66650532 66656669 L1PA4 6152 - 9 6152 3452 251 1 0 556 5 6 25 0 5 487 0 1 452 0 2 417 0 1 763 1 0 863 0 1 394 0 1 154 1 2 518 1 0 823 4 0 421 chain 19125 chr1 249250621 + 66657361 66657720 THE1B 368 - 1 368 129759 55 7 6 66 58 65 40 26 28 8 1 0 15 0 1 83 chain 31088 chr1 249250621 + 66662306 66662654 L1PA2 6032 + 5683 6025 82368 335 6 0 7 chain 539226 chr1 249250621 + 66664295 66670679 L1PA4 6152 - 1 6152 2942 836 13 7 110 236 8 997 0 1 698 1 2 315 1 0 1566 0 1 176 1 0 289 0 1 568 1 0 576 chain 6197 chr1 249250621 + 66763392 66763472 MSTD 398 - 312 393 183603 29 0 1 51 chain 6596 chr1 249250621 + 66765489 66765578 L1MA5 2750 - 1946 2034 180482 84 1 0 4 chain 4998 chr1 249250621 + 66771070 66771198 MER53 195 + 24 172 195156 43 55 75 30 chain 28189 chr1 249250621 + 66804419 66804720 AluYa5 310 + 0 300 92344 132 1 0 168 chain 5450 chr1 249250621 + 66848603 66848667 HERVL18-int 2198 + 595 659 190532 64 chain 9618 chr1 249250621 + 66849993 66850114 MER5A1 166 - 18 139 162497 121 chain 14851 chr1 249250621 + 66856299 66856503 L1PA16 3655 - 67 268 141776 10 3 0 135 3 0 5 0 3 48 chain 318499 chr1 249250621 + 66873772 66877942 L1PA7 6471 + 2605 6468 12648 36 1 0 31 309 0 107 0 1 769 3 7 175 0 2 531 7 6 68 0 1 148 0 1 618 2 1 503 4 7 314 0 1 145 7 0 61 2 1 157 3 2 9 1 2 11 0 1 128 1 0 19 chain 42134 chr1 249250621 + 66882676 66883221 LTR12F 595 - 7 595 66467 134 8 9 227 0 42 28 3 1 43 0 1 52 0 1 50 chain 415439 chr1 249250621 + 66885833 66892052 HERV9-int 5642 - 5 5612 9654 12 2 0 3 4 0 14 34 11 13 1 0 11 0 1 47 1 0 27 3 1 37 16 14 216 1 0 36 0 2 1117 0 226 1261 0 14 27 0 3 141 0 1 163 0 1 5 0 52 149 3 1 188 1 3 433 0 75 6 2 3 43 0 4 32 7 6 124 8 1 397 25 19 49 965 0 44 6 7 138 1 0 338 4 27 64 chain 73612 chr1 249250621 + 66890497 66891457 LTR5_Hs 974 - 0 974 46725 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 15028 chr1 249250621 + 66892142 66892318 LTR12F 595 + 419 595 141244 176 chain 55845 chr1 249250621 + 66913267 66914153 MER4D1 891 + 0 875 55220 25 1 0 51 0 1 6 0 1 4 1 0 26 2 0 4 2 0 100 8 9 192 101 91 93 0 1 222 14 15 34 chain 20510 chr1 249250621 + 66927136 66927489 THE1D 372 + 0 358 125597 101 19 9 18 0 8 24 57 64 134 chain 25910 chr1 249250621 + 66932645 66932935 L1PA4 6152 + 5861 6151 100371 290 chain 66449 chr1 249250621 + 66937531 66938707 L1PA14 3548 - 92 1723 49892 42 1 0 18 1 0 9 13 10 15 1 2 18 5 1 9 1 0 111 1 0 84 1 0 5 29 23 72 12 649 27 4 3 4 0 1 119 0 1 5 171 4 227 0 1 171 chain 544329 chr1 249250621 + 66946608 66952631 L1PA3long 6157 + 0 6156 2166 152 0 1 440 0 2 147 1 0 39 0 128 1293 2 1 189 0 4 3760 chain 24841 chr1 249250621 + 66977410 66977700 THE1B-int 1605 + 1 291 105676 290 chain 13377 chr1 249250621 + 66977700 66977875 MLT2A1 477 + 213 385 144619 160 3 0 12 chain 175911 chr1 249250621 + 66978086 66980554 L1PB1 5432 + 2825 5366 21360 17 1 0 163 4 3 339 1 2 120 6 5 160 5 101 9 0 9 171 0 1 37 0 1 23 1 0 24 0 1 102 0 1 510 19 16 93 4 5 152 5 4 21 0 9 179 26 14 21 1 0 4 5 4 12 5 1 9 2 0 51 7 6 12 3 2 40 6 5 12 24 12 19 2 0 5 8 8 6 2 0 20 chain 152772 chr1 249250621 + 67032397 67034346 L1PA8 5853 - 7 2166 24258 86 1 0 19 2 1 52 9 7 70 12 10 39 1 0 133 0 204 101 0 1 114 0 2 200 29 29 663 0 1 117 0 9 301 chain 17061 chr1 249250621 + 67034346 67034538 L1PA8 5853 + 3489 3681 134717 192 chain 9246 chr1 249250621 + 67068224 67068325 L1PA5 6144 + 6034 6135 164327 101 chain 16555 chr1 249250621 + 67076499 67076814 L1PB1 5432 + 5144 5427 136779 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 11 8 4 16 9 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 19935 chr1 249250621 + 67086061 67086419 THE1D 372 - 17 372 127347 15 1 0 116 92 79 16 0 11 118 chain 43475 chr1 249250621 + 67093435 67093926 L1PA5 6144 - 3 494 64840 33 1 0 118 0 1 339 chain 8266 chr1 249250621 + 67105744 67105848 MER30 238 + 134 235 169583 56 3 0 45 chain 3185 chr1 249250621 + 67129579 67129619 MADE1 96 - 50 89 221208 15 1 0 24 chain 158895 chr1 249250621 + 67130668 67132509 L1PA6 6164 - 9 1853 23475 64 1 0 11 0 1 62 4 5 180 0 1 342 0 1 1177 chain 16848 chr1 249250621 + 67171473 67171719 L1PA8 5853 + 5611 5853 135987 67 2 1 12 1 0 49 2 1 10 10 9 93 chain 16368 chr1 249250621 + 67174738 67174929 L1PA7 6471 - 23 215 137288 139 0 1 52 chain 30092 chr1 249250621 + 67201221 67201538 AluYb8 318 + 0 317 84511 317 chain 28753 chr1 249250621 + 67208143 67208451 AluYk12 309 - 1 309 90105 308 chain 101327 chr1 249250621 + 67227510 67229586 Tigger1 2417 - 361 1831 36438 75 3 4 20 10 11 154 8 9 37 304 18 179 0 11 78 353 18 188 15 14 48 0 6 144 0 3 35 9 12 40 0 1 20 14 0 126 7 9 81 0 1 128 chain 541229 chr1 249250621 + 67245825 67252007 L1PA4 6152 + 12 6152 2632 303 6 5 260 1 0 254 51 0 237 0 1 76 8 11 85 1 0 178 0 1 1017 0 7 736 1 0 984 1 2 118 0 2 1012 1 0 585 1 0 266 chain 11008 chr1 249250621 + 67255747 67255946 MER30 238 - 0 172 156178 45 3 0 58 52 28 41 chain 53761 chr1 249250621 + 67260145 67260743 L1PA4 6152 - 0 599 56501 333 0 1 265 chain 24321 chr1 249250621 + 67260753 67261019 L1PA4 6152 + 5273 5539 108540 266 chain 42339 chr1 249250621 + 67261386 67261889 L1PA5 6144 - 0 477 66219 247 26 0 230 chain 32490 chr1 249250621 + 67262290 67262741 MER4A 717 + 0 463 80046 126 1 0 40 1 2 157 14 10 73 7 23 32 chain 6650 chr1 249250621 + 67265021 67265235 L1MA8 2339 + 2019 2205 180084 59 104 82 36 6 0 9 chain 44921 chr1 249250621 + 67271134 67271620 L1PA3long 6157 + 4821 5307 63154 486 chain 77692 chr1 249250621 + 67271621 67272471 L1PA3long 6157 + 5307 6157 44661 850 chain 171995 chr1 249250621 + 67288594 67290483 L1PA3long 6157 - 1 1891 21815 1515 0 1 374 chain 29148 chr1 249250621 + 67290849 67291163 AluYb8 318 - 6 318 88324 186 2 0 126 chain 28545 chr1 249250621 + 67322850 67323179 L1PA5 6144 + 5815 6144 90987 329 chain 124123 chr1 249250621 + 67345918 67347487 THE1B-int 1605 + 0 1605 29656 35 0 2 232 0 5 53 0 1 17 0 3 82 1 26 1149 chain 6015 chr1 249250621 + 67367512 67367740 AluJr4 308 - 47 279 185089 62 135 0 19 0 139 12 chain 4167 chr1 249250621 + 67377822 67377883 MER4A1 472 + 122 182 205008 11 2 1 48 chain 180159 chr1 249250621 + 67381979 67384494 MER4-int 2692 + 108 2692 20976 10 1 0 100 3 7 20 0 1 195 0 5 107 28 29 25 0 4 58 5 8 48 9 12 116 0 2 151 0 2 76 0 3 9 0 2 34 0 4 36 0 1 45 0 3 91 3 0 5 2 0 9 2 0 90 16 17 19 9 17 109 0 1 173 1 3 136 1 0 75 19 24 28 16 21 83 0 2 17 0 1 44 1 0 195 1 0 85 1 0 14 0 7 24 5 8 46 0 11 7 1 0 98 2 0 11 chain 67773 chr1 249250621 + 67431732 67432647 L1PA5 6144 - 12 950 49335 716 0 2 5 33 54 46 73 73 42 chain 10730 chr1 249250621 + 67462574 67462774 L1MB2 1706 + 480 712 157280 107 40 71 15 5 6 33 chain 3286 chr1 249250621 + 67483661 67483699 MER4D0 881 + 282 320 219261 38 chain 111036 chr1 249250621 + 67532644 67534171 THE1C-int 1605 + 0 1599 33919 14 2 1 95 0 54 89 0 2 72 0 6 112 0 7 182 12 3 26 0 1 40 27 27 10 19 13 195 4 5 24 1 0 92 3 4 327 1 0 13 0 1 54 0 17 113 chain 25909 chr1 249250621 + 67534176 67534874 THE1C 375 + 0 375 100382 142 0 4 10 1 0 22 355 30 142 1 0 25 chain 565508 chr1 249250621 + 67544565 67550598 L1HS 6032 - 1 6030 184 163 10 0 3676 0 1 1623 0 4 491 0 1 70 chain 52753 chr1 249250621 + 67552821 67553578 LTR17 781 + 0 753 57159 20 0 1 38 1 0 102 1 0 18 1 0 57 1 0 8 12 11 72 2 1 366 21 0 12 11 33 14 chain 35132 chr1 249250621 + 67607441 67607910 LTR15 485 - 7 485 76019 20 0 1 15 2 0 5 1 0 25 0 1 22 8 10 100 0 4 100 0 2 21 0 2 150 chain 57855 chr1 249250621 + 67613572 67614310 LTR17 781 - 24 781 54060 16 5 28 386 1 0 148 1 0 23 1 0 99 1 0 57 chain 23980 chr1 249250621 + 67615950 67616304 L1PA8 5853 - 0 347 110445 93 1 0 19 2 1 49 4 3 6 1 0 74 3 1 43 1 0 35 7 5 7 0 2 9 chain 233698 chr1 249250621 + 67616488 67619447 L1PA8A 6298 - 307 3278 17103 76 0 1 35 2 0 62 0 1 246 0 2 74 0 3 290 1 0 87 1 0 6 0 1 118 8 0 12 3 0 472 1 5 22 0 2 82 0 2 35 1 2 71 0 2 24 0 1 51 0 1 33 0 2 291 0 1 269 0 1 173 4 0 13 0 4 18 0 1 359 1 2 18 chain 23494 chr1 249250621 + 67627306 67627598 AluSc5 308 - 6 298 113155 292 chain 5917 chr1 249250621 + 67641302 67641374 L1MB3 1562 - 247 319 186022 72 chain 532378 chr1 249250621 + 67642330 67648459 L1PA4 6152 - 11 6144 3924 239 0 18 963 0 1 886 0 1 93 1 2 735 2 1 487 0 1 194 1 0 949 13 0 693 0 1 348 4 0 521 chain 7837 chr1 249250621 + 67652227 67652323 L1MB8 1703 - 139 235 172088 96 chain 126107 chr1 249250621 + 67673457 67675025 THE1A-int 1579 + 0 1579 29062 133 0 1 201 4 6 159 7 6 245 0 1 93 0 1 427 0 5 81 0 1 195 0 1 23 chain 26903 chr1 249250621 + 67675025 67675378 THE1A 353 + 0 353 96618 24 1 2 58 0 1 23 1 0 112 1 0 133 chain 5936 chr1 249250621 + 67675386 67675457 L1PA16 3655 - 118 189 185823 71 chain 33260 chr1 249250621 + 67680432 67680907 LTR2B 499 + 9 499 78786 5 1 0 60 3 0 6 34 53 175 0 1 8 1 0 48 1 0 4 0 1 129 chain 2993 chr1 249250621 + 67698313 67698353 MIR 256 + 162 202 225142 40 chain 34301 chr1 249250621 + 67706384 67706811 MER57A1 433 - 0 433 77209 59 1 4 88 0 3 279 chain 149822 chr1 249250621 + 67706828 67708986 MER57-int 2662 - 15 2127 24642 22 3 0 33 5 0 10 1 0 23 4 1 10 7 5 25 2 0 12 14 2 67 23 17 81 5 0 10 2 1 321 9 3 50 7 10 35 4 5 5 0 1 31 0 16 8 20 1 383 4 3 57 2 0 76 5 8 51 0 16 36 25 6 137 21 20 100 0 1 90 5 6 317 chain 424620 chr1 249250621 + 67708996 67714413 L1PA7 6471 - 3 5125 9428 840 12 10 275 1 0 102 0 1 711 0 4 516 1 0 512 1 0 538 0 1 5 3 2 363 0 6 42 1 0 13 0 1 49 309 0 150 0 3 308 19 20 431 0 4 215 chain 4238 chr1 249250621 + 67714420 67714464 L1P3 4156 - 3605 3649 204044 44 chain 29732 chr1 249250621 + 67718357 67718786 MER57A1 433 - 3 433 85720 21 0 6 27 19 23 71 12 3 43 0 1 75 4 3 157 chain 176351 chr1 249250621 + 67741112 67743244 L1PA7 6471 + 4315 6465 21320 71 0 2 384 0 3 421 0 1 17 16 1 399 0 3 722 1 27 92 2 0 7 chain 25170 chr1 249250621 + 67745382 67745677 AluYf4 310 - 16 310 103909 13 2 0 73 1 2 206 chain 24069 chr1 249250621 + 67749598 67749938 L1PA8 5853 - 8 340 109932 85 1 0 19 2 1 40 8 7 14 9 7 63 2 0 45 1 0 51 chain 28550 chr1 249250621 + 67754070 67754526 MLT2A1 477 + 0 477 90965 87 3 4 47 17 35 22 1 0 13 5 4 171 0 2 14 31 34 25 2 1 18 chain 325693 chr1 249250621 + 67754526 67758433 HERVL-int 5654 + 0 5225 12356 648 0 1 301 0 2 334 0 1 133 0 14 363 5 6 241 0 1273 374 0 2 664 0 2 350 0 2 46 0 6 417 0 13 6 0 1 25 chain 3559 chr1 249250621 + 67765861 67765905 MER58B 340 - 16 60 214349 44 chain 18893 chr1 249250621 + 67776416 67776647 AluSc 308 - 17 250 130385 26 0 2 205 chain 20008 chr1 249250621 + 67786426 67786703 L1PA7 6471 - 4 277 127119 70 1 0 76 0 1 21 27 23 82 chain 3298 chr1 249250621 + 67809940 67809978 MER33 330 - 76 114 219014 38 chain 30314 chr1 249250621 + 67827967 67828285 AluYb8 318 + 0 318 83874 318 chain 6828 chr1 249250621 + 67834425 67834510 MIR 256 + 74 159 178732 85 chain 23753 chr1 249250621 + 67850801 67851180 THE1C 375 - 0 375 111759 158 34 32 30 5 4 14 15 13 9 0 1 114 chain 34110 chr1 249250621 + 67864396 67864955 MER4A 717 - 2 686 77468 4 1 0 39 2 0 27 26 28 219 9 100 34 4 0 31 0 16 45 5 18 14 28 40 64 2 0 5 chain 29838 chr1 249250621 + 67865441 67865903 MER41B 635 + 0 451 85323 121 2 6 10 0 4 100 0 1 27 5 0 4 21 0 18 1 7 48 28 28 77 chain 3036 chr1 249250621 + 67910906 67910943 MLT1G1 539 + 494 531 224284 37 chain 23895 chr1 249250621 + 67970518 67970791 AluY 311 + 15 287 110926 108 2 0 9 0 1 154 chain 7255 chr1 249250621 + 67971386 67971472 MLT1A 405 + 296 382 175733 86 chain 28308 chr1 249250621 + 67974873 67975228 THE1A 353 + 0 353 91910 111 1 0 91 1 0 151 chain 76048 chr1 249250621 + 67979009 67980077 MER11A 1151 + 7 1151 45448 52 0 99 72 1 0 62 17 14 20 0 2 115 0 1 94 0 7 139 8 11 139 23 0 13 8 15 22 18 0 36 0 1 60 6 7 163 chain 5825 chr1 249250621 + 67994350 67994424 MER41A 554 - 86 159 186902 37 1 0 36 chain 24903 chr1 249250621 + 67996979 67997296 THE1C 375 - 60 375 105325 190 3 0 42 5 6 77 chain 176659 chr1 249250621 + 68013405 68015473 L1P1 4361 - 1723 3789 21286 1093 0 6 288 12 11 9 0 1 206 1 0 317 12 5 130 chain 63545 chr1 249250621 + 68015473 68016183 L1P1 4361 + 2646 3356 51222 556 1 2 4 1 0 148 chain 51089 chr1 249250621 + 68016183 68016737 L1PA3long 6157 + 5602 6157 58261 405 0 1 149 chain 25867 chr1 249250621 + 68019847 68020200 THE1A 353 + 0 351 100580 105 9 8 179 0 2 6 9 6 45 chain 37688 chr1 249250621 + 68067768 68068341 L1PB3 3668 + 1834 2402 72571 82 3 7 29 13 0 10 1 14 137 18 7 86 11 12 153 0 1 30 chain 32065 chr1 249250621 + 68077954 68078295 L1PA2 6032 - 0 341 80743 341 chain 10273 chr1 249250621 + 68089366 68089485 L1PA3long 6157 + 6038 6157 159265 119 chain 8819 chr1 249250621 + 68111506 68111602 L1PA2 6032 + 5936 6032 166559 96 chain 9815 chr1 249250621 + 68124213 68124344 MER85 139 + 0 139 161519 95 7 15 29 chain 105887 chr1 249250621 + 68130907 68132097 L1PA5 6144 - 12 1238 35286 20 0 36 1170 chain 3840 chr1 249250621 + 68163389 68163432 MIRb 242 + 91 134 209779 43 chain 3509 chr1 249250621 + 68184665 68184706 MIR 256 - 118 159 215216 41 chain 3484 chr1 249250621 + 68238298 68238335 U7 62 - 24 61 215604 37 chain 88777 chr1 249250621 + 68249168 68250148 L1PA3long 6157 + 5162 6149 40090 142 0 4 832 0 3 6 chain 14267 chr1 249250621 + 68287651 68287842 MER30 238 - 0 209 143661 42 3 0 37 0 6 26 4 19 79 chain 6656 chr1 249250621 + 68287894 68287975 MER30 238 + 154 238 180037 42 0 3 39 chain 24628 chr1 249250621 + 68295685 68295986 AluSp 311 - 10 310 106840 31 2 1 268 chain 23091 chr1 249250621 + 68332887 68333179 AluY 311 + 11 298 115189 40 6 0 81 0 1 165 chain 14460 chr1 249250621 + 68335915 68336075 L1PA3long 6157 - 0 159 143017 148 1 0 11 chain 28445 chr1 249250621 + 68336693 68337070 THE1C 375 + 0 375 91396 183 13 12 154 1 0 26 chain 120291 chr1 249250621 + 68364738 68366460 L1PB1 5432 + 3734 5406 30944 44 4 5 236 20 8 478 8 13 110 3 0 363 0 3 109 88 66 50 1 0 18 1 0 44 1 0 6 33 21 18 9 6 14 2 0 24 1 0 22 1 0 14 chain 410321 chr1 249250621 + 68366800 68373468 L1PB1 5432 - 12 5355 9790 16 1 0 13 1 0 21 1 0 24 86 69 40 1 0 16 2 1 28 3 0 24 2 0 9 19 14 7 1 0 24 1 0 6 11 9 83 0 2 127 0 12 63 2 10 21 1 0 147 0 5 74 14 13 199 0 5 37 0 1 279 1 0 215 0 1 67 21 17 585 52 1 127 7 2 119 14 16 37 3 2 12 1 0 86 0 1 226 5 0 1096 0 7 64 0 1 36 0 1 416 0 1 7 1 0 111 1259 1 221 7 3 155 5 0 193 0 2 115 chain 101863 chr1 249250621 + 68371534 68372770 L1PA8 5853 - 0 1234 36294 92 2 1 19 3 1 47 3 1 13 2 1 33 0 1 36 2 0 46 1 0 546 4 9 222 0 1 165 chain 3008 chr1 249250621 + 68381278 68381315 MER6B 211 - 22 59 224878 37 chain 5833 chr1 249250621 + 68388154 68388625 MER57B2 428 - 0 419 186842 13 9 14 26 359 302 64 chain 45067 chr1 249250621 + 68434215 68435000 L1MA3 4352 - 0 736 62975 16 12 8 11 1 0 29 1 0 6 1 0 22 2 0 25 4 0 40 1 0 4 1 2 68 64 49 42 19 0 145 12 10 17 9 8 180 4 5 49 chain 29623 chr1 249250621 + 68435012 68435378 THE1B 368 - 0 368 86140 192 1 3 173 chain 4928 chr1 249250621 + 68443697 68443758 MER53 195 + 0 61 195956 61 chain 2512 chr1 249250621 + 68458961 68459005 MER2 342 - 153 199 232981 12 6 8 26 chain 509360 chr1 249250621 + 68468814 68474902 L1PA6 6164 - 2 6164 6217 43 2 0 101 2 0 9 2 6 495 5 8 100 0 10 68 0 4 90 1 0 297 18 6 271 1 3 47 1 0 279 1 0 61 0 42 350 0 4 678 5 6 858 0 1 603 1 0 12 0 1 257 1 0 389 1 0 243 0 17 338 3 2 64 4 12 387 chain 3866 chr1 249250621 + 68481007 68481058 MIR 256 - 136 186 209355 25 1 0 25 chain 114065 chr1 249250621 + 68495389 68497062 L1PB1 5432 - 28 1668 33084 11 1 0 23 1 0 23 3 1 11 15 17 10 1 0 10 15 4 13 1 0 45 1 0 17 2 1 50 2 0 7 9 5 12 1 0 10 1 0 19 3 0 7 4 5 182 0 1 122 2 1 19 0 1 105 5 4 40 3 0 117 14 15 51 0 1 32 10 9 42 4 0 597 chain 45518 chr1 249250621 + 68497062 68497681 L1PB1 5432 + 3137 3751 62340 15 0 3 6 2 3 79 2 0 357 1 2 124 14 6 19 chain 75732 chr1 249250621 + 68523611 68524563 LTR13 1007 + 0 956 45629 73 2 0 308 4 5 306 1 3 46 0 1 73 0 1 30 12 13 97 chain 18274 chr1 249250621 + 68528341 68528645 L1PA13 3608 + 3166 3464 132142 94 0 4 9 2 0 62 1 0 27 2 1 14 22 19 21 1 2 22 2 0 7 2 0 16 chain 4884 chr1 249250621 + 68549932 68550012 MLT1J1 437 + 0 79 196441 12 11 10 57 chain 508820 chr1 249250621 + 68553299 68559388 L1PA6 6164 - 17 6135 6257 269 0 3 560 1 0 204 0 1 351 0 3 257 0 2 125 0 4 245 6 25 83 0 3 311 1 0 398 1 0 27 0 2 83 10 1 633 0 1 155 0 4 68 1 0 4 28 0 38 0 5 68 0 2 165 0 1 267 1 0 333 1 0 229 0 1 309 0 4 87 0 17 244 0 1 44 2 1 225 0 1 20 14 13 221 chain 18240 chr1 249250621 + 68609211 68609443 Tigger3a 397 + 143 374 132235 22 1 0 209 chain 11486 chr1 249250621 + 68624176 68624395 MER30 238 - 0 238 154351 34 13 10 36 0 6 28 15 28 18 3 4 50 8 10 14 chain 97167 chr1 249250621 + 68636870 68638004 L1PA7 6471 + 5330 6470 37520 194 0 1 74 0 4 20 3 0 75 1 3 594 0 2 173 chain 22889 chr1 249250621 + 68718572 68718874 L1PA7 6471 - 2 299 116147 10 0 4 156 11 3 19 1 0 105 chain 36610 chr1 249250621 + 68722239 68722700 LTR2 463 + 0 463 74087 75 0 1 284 14 15 88 chain 22019 chr1 249250621 + 68744678 68744943 AluSc5 308 + 0 264 120144 131 1 0 133 chain 22865 chr1 249250621 + 68760569 68760898 LTR1 825 - 7 339 116258 85 18 3 8 0 15 89 1 5 21 1 0 106 chain 25068 chr1 249250621 + 68760936 68761224 AluSg7 307 - 17 306 104469 158 0 1 130 chain 25256 chr1 249250621 + 68802894 68803195 AluSc 308 - 7 308 103442 301 chain 41907 chr1 249250621 + 68813323 68814397 LTR12F 595 + 0 595 66748 55 436 0 48 1 2 35 7 5 32 39 38 12 42 0 137 0 1 230 chain 35665 chr1 249250621 + 68813388 68813798 L1PA5 6144 - 6 418 75314 247 0 2 163 chain 6529 chr1 249250621 + 68825048 68825126 MER20 218 + 90 167 181014 69 1 0 8 chain 5334 chr1 249250621 + 68833194 68833259 MSTC 436 + 33 98 191691 65 chain 28729 chr1 249250621 + 68851686 68852120 LTR7 482 + 0 482 90210 138 74 123 44 0 1 47 2 0 129 chain 297528 chr1 249250621 + 68852122 68855986 HERVH-int 3825 + 0 3825 13551 534 253 1 35 1 0 10 65 0 24 4 55 38 1 0 20 2 1 61 1 0 132 0 1 317 19 4 208 0 1 239 8 35 585 0 1 151 0 1 666 8 218 254 6 11 222 chain 1274 chr1 249250621 + 68852866 68852896 HERVH-int 3825 + 436 466 228718 30 chain 4302 chr1 249250621 + 68852955 68853018 HERVH-int 3825 + 522 579 203195 13 5 0 35 1 0 9 chain 29877 chr1 249250621 + 68857245 68857675 LTR7 482 + 0 482 85177 138 38 45 28 8 50 44 0 1 13 0 2 161 chain 115160 chr1 249250621 + 68861063 68862596 THE1A-int 1579 - 2 1579 32729 88 0 18 51 0 20 413 3 4 296 48 51 410 0 1 23 10 1 7 0 9 140 7 8 37 chain 7267 chr1 249250621 + 68956375 68956502 L1PA13 3608 + 3374 3497 175676 22 2 0 47 2 0 6 3 1 19 4 3 11 0 3 11 chain 401292 chr1 249250621 + 68965040 68970325 L1PB1 5432 + 79 5420 10046 113 1 3 190 0 5 117 4 5 243 6 1 302 0 1 92 31 0 22 0 3 229 6 0 236 0 1 4 3 2 323 5 13 224 8 7 230 0 1 53 1 6 18 5 6 82 1 99 242 0 4 52 0 1 93 9 10 163 0 1 457 1 0 5 30 16 253 0 10 367 0 1 236 2 0 84 0 2 105 0 1 285 11 10 6 1 0 24 1 0 9 1 0 9 6 2 10 2 0 10 0 1 41 18 16 44 1 0 16 2 0 6 22 12 13 8 5 14 2 0 24 1 0 21 1 0 7 0 2 4 1 0 16 chain 29425 chr1 249250621 + 68970842 68971157 AluYb8 318 - 5 318 86965 195 2 0 118 chain 23530 chr1 249250621 + 69010062 69010323 L1PA5 6144 - 9 271 112961 145 0 1 116 chain 114288 chr1 249250621 + 69019406 69021999 THE1B-int 1605 + 33 1600 32999 400 35 18 225 1 0 68 2 45 480 1 0 41 1063 13 277 chain 86457 chr1 249250621 + 69020659 69021683 L1PA6 6164 + 5135 6161 40983 180 1 0 52 0 1 10 0 1 178 0 1 603 chain 4283 chr1 249250621 + 69034363 69034540 LTR16A 446 + 61 270 203446 18 115 147 44 chain 205116 chr1 249250621 + 69047896 69050335 L1PA7 6471 + 4024 6468 18847 182 2 0 465 0 4 761 0 1 45 0 1 141 0 4 510 0 1 322 4 0 7 chain 14923 chr1 249250621 + 69067608 69067800 L1P5 443 - 7 198 141565 101 2 1 89 chain 9875 chr1 249250621 + 69108822 69108939 L1PA6 6164 - 4 121 161196 117 chain 39023 chr1 249250621 + 69108939 69109377 L1PA5 6144 - 1 443 70708 146 1 5 291 chain 16937 chr1 249250621 + 69114563 69114760 L1PA5 6144 + 5927 6125 135758 66 1 2 130 chain 532181 chr1 249250621 + 69147183 69153319 L1PA4 6152 - 0 6150 3943 140 4 5 411 6 6 263 11 14 744 0 1 110 0 1 988 0 1 480 15 10 301 0 2 539 0 3 1179 0 4 220 1 0 159 6 14 359 4 0 196 chain 106249 chr1 249250621 + 69177229 69179044 L1PA10 4194 + 2686 4161 35196 71 22 38 67 5 0 9 6 1 84 35 0 105 10 6 159 323 0 268 0 1 324 7 24 89 1 3 181 4 1 33 1 0 11 chain 48195 chr1 249250621 + 69184278 69184882 L1PA8A 6298 - 7 620 60324 277 0 5 121 0 1 106 0 1 37 0 2 63 chain 72304 chr1 249250621 + 69184882 69185801 L1PA8A 6298 + 4764 5684 47330 61 2 0 106 0 1 202 1 2 442 0 2 29 2 1 74 chain 554810 chr1 249250621 + 69199791 69205819 L1HS 6032 - 0 6032 847 852 0 4 1647 86 86 3443 chain 9584 chr1 249250621 + 69230828 69230962 L1PB1 5432 + 5158 5287 162673 11 2 0 51 2 1 16 1 0 44 1 0 6 chain 6260 chr1 249250621 + 69242128 69242200 MER5A1 166 - 49 121 183093 72 chain 3117 chr1 249250621 + 69242945 69242984 L1MC5 759 - 163 202 222598 39 chain 5778 chr1 249250621 + 69255718 69255783 L1MA7 2200 + 1877 1942 187367 65 chain 47002 chr1 249250621 + 69267248 69267905 PABL_A 660 + 17 652 61208 87 0 2 56 15 9 105 22 1 5 0 1 299 5 7 63 chain 113863 chr1 249250621 + 69283219 69284650 LTR12C 1709 + 0 1709 33129 212 2 1 78 0 9 265 4 8 80 0 278 181 1 0 4 4 2 99 0 1 6 11 4 22 1 0 66 7 5 5 0 1 18 0 2 55 1 0 139 1 0 86 1 0 82 chain 288834 chr1 249250621 + 69305158 69309163 L1PB1 5432 - 18 3946 14097 22 1 0 22 1 0 24 2 0 15 7 4 19 21 9 4 1 0 14 1 0 45 1 0 11 9 8 41 10 8 9 2 0 3 2 0 10 1 0 8 1 0 23 7 0 8 23 32 100 0 4 263 1 0 78 4 0 17 0 4 67 0 2 93 19 20 287 0 2 175 0 1 101 7 3 126 11 6 87 15 0 14 0 15 83 13 11 10 47 11 128 11 3 521 3 0 8 0 1 726 0 1 371 1 0 5 2 0 79 6 7 87 0 1 71 chain 15665 chr1 249250621 + 69315240 69315465 MER44A 345 + 89 323 139381 12 0 12 7 4 0 133 11 12 58 chain 106565 chr1 249250621 + 69321814 69323248 L1PA10 4194 - 33 1480 35101 10 2 1 34 3 0 164 1 0 10 7 8 33 0 1 357 1 3 25 0 1 5 6 1 92 4 0 182 0 3 5 0 1 188 5 9 55 0 10 186 10 14 49 chain 55852 chr1 249250621 + 69329136 69329911 LTR17 781 + 3 757 55212 53 1 0 100 1 0 23 1 0 57 1 0 28 16 0 63 1 0 301 1 0 67 2 24 12 21 0 26 chain 46207 chr1 249250621 + 69331450 69331961 L1PA4 6152 - 0 511 61842 511 chain 16331 chr1 249250621 + 69335796 69336028 L1PA7 6471 - 2 222 137401 10 0 6 55 15 1 72 4 0 76 chain 546036 chr1 249250621 + 69341460 69347488 L1PA2 6032 - 0 6029 1941 11 3 0 143 0 5 7 5 0 78 2 9 8 7 0 932 0 1 103 0 1 1593 0 1 1081 0 2 468 0 1 474 1 0 857 1 0 254 chain 24524 chr1 249250621 + 69349784 69350140 THE1B 368 + 0 368 107417 44 0 15 110 6 5 18 2 0 6 0 1 77 18 17 75 chain 41142 chr1 249250621 + 69353930 69354427 MER9a3 513 + 0 497 67729 13 0 1 244 1 0 239 chain 227390 chr1 249250621 + 69359265 69361890 L1PA5 6144 + 3494 6140 17462 6 0 1 171 0 21 1578 18 16 727 0 1 125 chain 549841 chr1 249250621 + 69389169 69395194 L1PA2 6032 + 0 6032 1469 250 7 6 3129 0 1 850 0 2 944 0 4 109 0 1 736 chain 29663 chr1 249250621 + 69429486 69429804 AluYb8 318 - 0 318 86017 318 chain 3460 chr1 249250621 + 69429804 69429846 THE1B 368 + 326 368 215999 42 chain 165581 chr1 249250621 + 69432199 69434300 L1PA8 5853 + 3723 5853 22576 611 1 0 106 0 1 47 0 21 456 1 2 17 0 4 22 5 3 250 6 7 26 0 1 47 1 0 101 0 10 111 1 0 42 2 0 67 5 4 59 7 6 16 1 0 93 chain 443396 chr1 249250621 + 69451357 69457650 L1PA8 5853 + 50 5853 8942 22 2 0 10 1 0 13 50 14 44 19 19 128 20 8 343 16 5 159 124 24 109 0 1 141 0 1 54 7 6 65 0 1 320 315 0 207 0 1 154 0 3 42 24 10 20 1 2 44 10 0 192 1 0 174 1 2 255 15 19 155 0 3 321 3 0 5 0 3 38 0 12 190 1 2 4 1 0 264 1 3 209 1 2 31 5 6 247 1 4 21 10 11 24 2 0 181 2 1 483 18 1 104 0 4 17 3 1 273 0 1 281 1 0 44 2 0 67 15 14 51 2 1 19 4 3 90 chain 162691 chr1 249250621 + 69461300 69463107 L1PA3long 6157 - 0 1804 22978 15 3 0 1789 chain 160929 chr1 249250621 + 69463107 69503038 L1PA3long 6157 + 2987 6146 23202 190 1 0 1171 37404 629 507 1 2 443 0 3 214 chain 29075 chr1 249250621 + 69476410 69476763 L1PA5 6144 - 2 364 88662 7 4 0 39 0 13 303 chain 5660 chr1 249250621 + 69498419 69498555 L1MEf 1413 - 702 840 188476 25 1 0 28 0 1 8 45 47 29 chain 82816 chr1 249250621 + 69500971 69501873 L1PA3long 6157 - 1193 2095 42294 902 chain 181989 chr1 249250621 + 69505614 69508437 L1MA1 4479 + 228 2721 20786 48 2 0 83 38 1 57 0 2 184 2 0 63 1 4 115 5 9 189 3 1 22 0 12 163 0 2 51 2 0 203 1 0 5 1 2 141 1 3 185 0 1 227 314 0 88 2 0 29 0 1 230 6 9 16 1 0 35 5 7 102 0 3 82 2 0 64 1 0 54 chain 2726 chr1 249250621 + 69510375 69510424 MADE1 96 - 5 70 229780 27 6 22 16 chain 39689 chr1 249250621 + 69529443 69529955 MER4E1 777 - 0 541 69771 174 0 2 50 3 11 43 1 0 63 0 1 81 0 19 97 chain 2820 chr1 249250621 + 69532819 69532849 L1PA10 4194 - 48 78 228467 30 chain 24222 chr1 249250621 + 69540049 69540408 THE1B 368 - 0 368 109078 125 39 49 24 1 0 170 chain 28420 chr1 249250621 + 69549884 69550295 L1PREC2 3366 + 2459 2865 91502 19 0 1 171 1 2 96 6 4 54 2 1 42 8 4 12 chain 24543 chr1 249250621 + 69558089 69558377 AluSp 311 + 7 295 107295 288 chain 534779 chr1 249250621 + 69562213 69568351 L1PA5 6144 - 0 6141 3617 328 0 1 4 0 1 81 0 1 828 0 1 1918 17 10 408 0 4 131 1 0 883 0 1 88 0 2 398 0 1 22 2 1 1029 chain 17191 chr1 249250621 + 69573338 69573565 AluY 311 + 73 298 135056 45 3 0 12 1 2 166 chain 67192 chr1 249250621 + 69574150 69574882 L1PA2 6032 + 5293 6025 49567 732 chain 542116 chr1 249250621 + 69580160 69586194 L1PA2 6032 - 6 6030 2484 575 0 1 1921 86 86 400 1 0 1257 2 0 347 0 2 202 14 4 1229 chain 2351 chr1 249250621 + 69606868 69606902 L1PA8 5853 + 5522 5554 234778 5 2 0 27 chain 5624 chr1 249250621 + 69606911 69606977 L1PA8 5853 + 5562 5626 188836 48 2 0 16 chain 81451 chr1 249250621 + 69607046 69608037 L1PA7 6471 + 5476 6467 42987 9 3 0 129 4 5 90 0 1 598 2 3 156 chain 26339 chr1 249250621 + 69632582 69632892 AluSp 311 + 0 304 98657 120 2 0 57 1 0 118 3 0 9 chain 11379 chr1 249250621 + 69636901 69637038 THE1A 353 + 218 353 154786 43 2 0 92 chain 31124 chr1 249250621 + 69654786 69655148 L1PA5 6144 - 2 365 82298 151 4 5 207 chain 6948 chr1 249250621 + 69676704 69676846 Tigger2a 444 + 238 381 177833 59 24 26 27 15 14 17 chain 25565 chr1 249250621 + 69681822 69682151 L1PA7 6471 - 231 561 101905 86 0 1 134 11 9 5 0 2 93 chain 18577 chr1 249250621 + 69682151 69682367 L1PA7 6471 + 6247 6468 131292 72 0 3 134 0 2 10 chain 26506 chr1 249250621 + 69706901 69707206 AluY 311 + 0 301 98017 126 4 0 175 chain 11777 chr1 249250621 + 69708936 69709068 L1PA6 6164 + 5857 5989 153145 132 chain 29550 chr1 249250621 + 69731466 69731776 AluYa5 310 - 0 310 86419 310 chain 186939 chr1 249250621 + 69762334 69764794 L1PA13 3608 - 568 3009 20339 73 3 0 76 0 2 218 0 1 115 23 18 110 1 2 460 0 4 243 4 2 16 2 0 183 1 5 104 0 5 6 18 0 5 3 0 207 8 0 69 0 3 7 0 4 468 6 4 31 chain 439142 chr1 249250621 + 69772480 69778305 L1PA8A 6298 - 329 6075 9076 162 0 1 233 3 2 8 0 1 58 0 1 17 1 0 165 0 1 87 2 0 32 0 2 592 0 1 456 0 1 78 0 1 67 2 3 128 0 1 292 2 1 159 16 5 39 5 3 88 25 29 487 14 18 145 17 6 22 50 9 32 0 1 8 0 1 20 21 8 4 1 0 536 0 3 339 5 1 318 3 4 28 0 3 53 1 4 58 0 1 11 4 0 32 0 4 588 1 0 76 23 20 9 2 0 53 25 19 4 1 0 48 23 19 6 4 0 14 1 0 5 1 0 15 chain 49535 chr1 249250621 + 69778310 69778872 LTR6B 557 - 0 557 59362 156 1 0 6 5 0 35 0 1 359 chain 14127 chr1 249250621 + 69806824 69807003 THE1B 368 + 2 180 144119 167 1 0 11 chain 29222 chr1 249250621 + 69807004 69807314 AluYa5 310 + 0 309 87946 132 1 0 177 chain 55674 chr1 249250621 + 69809885 69810571 L1PA7 6471 - 812 1498 54605 38 1 0 59 0 4 18 0 1 341 0 1 177 6 1 46 chain 58891 chr1 249250621 + 69810571 69811327 L1PA7 6471 + 5698 6461 53466 8 2 0 151 0 6 133 0 2 308 3 5 5 2 0 62 0 1 82 chain 6433 chr1 249250621 + 69823072 69823146 MER51B 395 - 316 390 181755 74 chain 48792 chr1 249250621 + 69823623 69824261 MER57-int 2662 - 324 969 59882 6 2 0 155 0 5 225 3 1 5 0 2 31 3 0 72 0 7 136 chain 20121 chr1 249250621 + 69829074 69829415 MER51B 395 - 0 395 126769 30 12 11 66 1 0 4 41 41 98 4 60 85 chain 510374 chr1 249250621 + 69855135 69861276 L1PA5 6144 - 1 6144 6133 62 0 1 195 1 0 216 5 6 217 0 1 677 0 1 680 0 1 122 2 6 714 0 1 17 3 0 76 2 1 389 0 5 83 0 2 92 0 2 262 0 1 23 0 1 880 6 10 20 0 1 208 9 0 218 25 0 123 1 2 693 1 15 119 chain 16058 chr1 249250621 + 69863914 69864106 AluSp 311 + 93 284 138183 27 1 0 164 chain 185577 chr1 249250621 + 69880995 69883208 L1PA7 6471 - 7 2220 20459 148 1 3 106 7 0 496 2 1 240 0 5 266 0 1 528 2 1 302 1 2 114 chain 153381 chr1 249250621 + 69883217 69885084 L1PA7 6471 + 2356 4233 24174 163 0 2 60 0 6 52 0 2 520 0 1 190 4 5 343 0 3 82 6 1 447 chain 254097 chr1 249250621 + 69911218 69914130 L1PA4 6152 + 3204 6152 16026 11 0 11 289 0 1 190 5 15 5 0 3 797 4 7 1363 1 2 95 0 2 146 0 5 6 chain 7841 chr1 249250621 + 69918368 69918456 L1PA3long 6157 + 6069 6157 172073 88 chain 45176 chr1 249250621 + 69930424 69931034 L1PA10 4194 - 33 673 62845 11 1 0 33 3 0 5 1 0 36 1 0 31 1 0 53 0 3 128 10 7 192 0 37 104 chain 27392 chr1 249250621 + 69943724 69944022 AluYa5 310 - 15 310 94998 169 1 0 31 2 0 95 chain 149581 chr1 249250621 + 69951992 69953694 L1PA5 6144 - 13 1716 24679 1093 1 2 608 chain 20918 chr1 249250621 + 69956673 69956926 AluSc 308 + 37 292 124218 110 0 2 143 chain 4193 chr1 249250621 + 69975304 69975348 L1PA8 5853 - 49 93 204645 44 chain 29687 chr1 249250621 + 69983872 69984251 MLT2A1 477 + 7 391 85878 135 0 1 25 1 5 196 0 4 12 4 0 6 chain 19300 chr1 249250621 + 69993141 69993505 THE1D 372 + 0 361 129244 54 43 25 101 29 31 55 19 33 41 1 0 21 chain 19509 chr1 249250621 + 70002242 70002460 L1P1 4361 - 1292 1510 128628 218 chain 43522 chr1 249250621 + 70002461 70002973 L1PA5 6144 + 5632 6144 64778 349 13 13 150 chain 4206 chr1 249250621 + 70010862 70010929 MLT1A0 366 - 48 116 204468 40 7 8 20 chain 30077 chr1 249250621 + 70027330 70027649 AluYb9 318 + 0 318 84571 200 1 0 118 chain 60267 chr1 249250621 + 70043022 70043688 L1PA3long 6157 - 959 1625 52611 666 chain 86354 chr1 249250621 + 70043688 70044631 L1PA3long 6157 + 5210 6157 41019 892 0 4 51 chain 20257 chr1 249250621 + 70070724 70071026 THE1B 368 + 0 306 126356 169 1 0 29 35 0 8 0 40 60 chain 98377 chr1 249250621 + 70092255 70093400 L1PA5 6144 - 6 1142 37199 147 9 0 989 chain 30071 chr1 249250621 + 70129385 70129703 AluYb8 318 - 0 318 84602 318 chain 73251 chr1 249250621 + 70133836 70134682 L1PA7 6471 - 7 853 46906 846 chain 10519 chr1 249250621 + 70137696 70137814 L1PA5 6144 - 3 121 158167 118 chain 6922 chr1 249250621 + 70148312 70148425 MLT1A0 366 + 204 318 178018 16 19 20 78 chain 27934 chr1 249250621 + 70194525 70194904 THE1C 375 - 0 375 93229 26 1 0 159 1 0 60 13 11 119 chain 7564 chr1 249250621 + 70253472 70253574 THE1B 368 - 251 358 173773 70 5 10 27 chain 28399 chr1 249250621 + 70261645 70261978 L1PA4 6152 - 1 326 91585 55 1 0 85 7 0 185 chain 11860 chr1 249250621 + 70262205 70262494 AluSp 311 + 154 299 152788 14 144 0 131 chain 105060 chr1 249250621 + 70272661 70273921 L1PA7 6471 - 3684 4945 35490 153 0 2 248 1 0 123 1 0 55 0 1 679 chain 306593 chr1 249250621 + 70273927 70277608 L1PA7 6471 + 2790 6465 13148 43 11 10 591 20 6 57 2 0 52 0 4 27 0 1 427 1 0 100 0 1 239 0 3 1263 0 3 848 chain 66496 chr1 249250621 + 70286062 70286839 L1PA7 6471 - 10 794 49871 147 0 7 630 chain 90853 chr1 249250621 + 70320876 70321895 L1P1 4361 - 1285 2305 39339 773 0 1 246 chain 108118 chr1 249250621 + 70321895 70323133 L1P1 4361 + 3081 4317 34683 1069 1 0 155 1 0 12 chain 552659 chr1 249250621 + 70348296 70354326 L1PA2 6032 - 0 6032 1115 150 1 2 5669 0 1 210 chain 38380 chr1 249250621 + 70354592 70357633 Tigger1 2417 - 0 2407 71595 59 24 39 63 2 0 47 49 50 137 36 0 84 11 10 9 0 1 95 2300 1688 125 chain 22243 chr1 249250621 + 70360627 70360923 AluSp 311 + 0 290 119155 99 19 13 178 chain 47601 chr1 249250621 + 70369206 70369774 L1P3 4156 + 3320 3902 60762 227 0 4 325 0 10 16 chain 530891 chr1 249250621 + 70370957 70377031 L1PA4 6152 - 16 6150 4095 917 1 0 2054 1 0 463 7 0 393 0 1 243 1 0 815 6 91 187 0 2 137 20 3 254 1 0 574 chain 547744 chr1 249250621 + 70388496 70394635 L1PA3long 6157 - 0 6151 1733 134 6 0 604 0 16 895 0 4 1211 0 1 121 1 0 463 7 0 393 0 1 1346 13 17 945 chain 12379 chr1 249250621 + 70408590 70408774 MER30 238 + 37 237 150713 69 4 24 42 1 0 20 4 1 44 chain 406402 chr1 249250621 + 70433205 70439105 L1PB1 5432 + 19 5420 9900 33 3 2 48 2 4 101 0 1 69 43 43 512 0 2 26 0 2 343 1 23 71 343 0 382 0 3 850 18 18 180 1 0 5 0 1 104 1 0 375 0 1 46 5 6 32 0 1 125 27 29 69 9 12 186 5 8 385 1 0 381 0 1 9 0 4 127 1 0 72 1 0 112 30 30 226 0 4 19 172 3 11 5 2 20 1 0 8 1 0 12 5 1 10 3 1 42 1 0 8 2 1 16 1 0 38 6 5 10 35 22 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 0 1 15 chain 242408 chr1 249250621 + 70461089 70463755 L1PA3long 6157 - 1 2672 16648 793 0 1 202 0 5 869 1 0 801 chain 30835 chr1 249250621 + 70473660 70474094 MLT2A1 477 - 0 477 82798 20 9 8 9 4 2 15 0 40 72 0 1 137 1 5 25 0 1 142 chain 72152 chr1 249250621 + 70563149 70563940 L1PA2 6032 - 6 797 47169 791 chain 117816 chr1 249250621 + 70563940 70565251 L1P1 4361 + 2918 4228 31858 1233 1 0 77 chain 23429 chr1 249250621 + 70628757 70629059 AluSc5 308 - 9 298 113483 157 14 1 131 chain 23799 chr1 249250621 + 70629815 70630092 AluSp 311 + 24 301 111483 277 chain 24324 chr1 249250621 + 70634711 70635062 MER83C 372 + 2 339 108526 33 1 2 42 16 0 78 5 7 10 1 0 4 1 0 127 0 1 33 chain 26665 chr1 249250621 + 70650934 70651288 THE1A 353 + 0 353 97437 47 0 1 42 6 5 103 1 0 155 chain 35421 chr1 249250621 + 70657583 70658019 L1PREC2 3366 - 567 1001 75652 44 2 1 4 1 0 39 1 0 213 0 1 132 chain 6252 chr1 249250621 + 70667263 70667337 L1MC2 1988 + 1028 1103 183149 16 0 1 58 chain 24831 chr1 249250621 + 70667373 70667688 AluSp 311 + 0 310 105717 128 5 0 182 chain 3977 chr1 249250621 + 70684626 70684676 MER2 342 + 136 186 207719 50 chain 21404 chr1 249250621 + 70686259 70686540 AluSx1 309 + 11 292 122495 11 2 0 249 0 2 19 chain 5903 chr1 249250621 + 70732187 70732268 L1MD2 1676 - 1420 1500 186154 65 1 0 15 chain 13820 chr1 249250621 + 70734578 70734729 L1PA3long 6157 - 4 155 145181 151 chain 4901 chr1 249250621 + 70745093 70745154 MER34B 572 + 327 388 196263 61 chain 6771 chr1 249250621 + 70764437 70764590 MER58A 224 + 41 192 179173 22 18 24 33 6 10 42 16 4 16 chain 18019 chr1 249250621 + 70828960 70829302 MER51B 395 + 0 387 132805 34 13 32 31 15 23 87 45 50 37 3 15 8 0 1 69 chain 29647 chr1 249250621 + 70832136 70832544 MER41B 635 - 6 418 86084 120 0 1 40 32 36 203 1 0 12 chain 36407 chr1 249250621 + 70832544 70833042 LTR10F 562 - 0 562 74363 87 2 0 198 5 11 13 0 24 30 15 18 38 0 28 29 0 5 81 chain 212624 chr1 249250621 + 70833744 70836504 HERVH-int 3825 + 0 2991 18317 333 1 0 74 12 13 37 13 18 9 0 264 8 1 2 22 1 0 344 0 3 107 46 16 181 9 0 286 1 4 321 0 1 43 4 9 313 0 1 5 5 4 382 11 0 191 chain 60265 chr1 249250621 + 70884603 70885268 L1PA4 6152 - 95 761 52701 266 0 1 399 chain 8439 chr1 249250621 + 70885282 70885385 L1PA4 6152 + 5815 6143 168626 12 0 225 91 chain 30594 chr1 249250621 + 70891185 70891616 MSTA 426 - 0 426 83207 36 4 3 24 0 1 109 0 1 43 4 0 81 7 5 66 2 1 29 0 1 26 chain 2965 chr1 249250621 + 70920029 70920060 MER21B 843 - 482 513 225778 31 chain 86057 chr1 249250621 + 70926107 70927082 LTR5_Hs 974 - 0 974 41136 62 2 1 911 chain 26908 chr1 249250621 + 70927515 70927884 THE1D-int 1627 + 0 370 96600 15 16 18 4 1 0 248 0 3 6 3 0 76 chain 7074 chr1 249250621 + 70929940 70930036 THE1D-int 1627 - 0 110 176926 52 1 15 43 chain 42879 chr1 249250621 + 70943448 70943933 L1PA5 6144 - 0 492 65558 148 0 7 337 chain 17214 chr1 249250621 + 70953843 70954193 THE1D 372 + 29 372 135005 28 27 0 17 3 0 6 19 23 35 0 1 29 52 70 134 chain 9020 chr1 249250621 + 71016865 71016962 L1PA4 6152 + 6049 6146 165489 97 chain 3249 chr1 249250621 + 71024868 71024905 MLT2A2 560 - 5 42 220036 37 chain 171200 chr1 249250621 + 71025606 71027719 HERVL-int 5654 - 0 2100 21912 225 4 0 245 1 2 151 1 0 529 1 2 144 6 5 592 10 1 204 chain 28186 chr1 249250621 + 71027721 71028068 HERVL-int 5654 + 1480 1826 92355 294 1 0 52 chain 3448 chr1 249250621 + 71039440 71039480 MLT2B2 565 + 525 565 216249 40 chain 288711 chr1 249250621 + 71054478 71058006 HERVH-int 3825 + 0 3816 14104 333 1 0 199 5 0 38 1 0 10 1 0 24 1 52 35 7 6 82 1 0 138 0 3 485 9 24 4 1 0 346 0 1 43 0 2 181 0 4 76 12 17 967 9 11 5 0 3 31 0 210 77 10 11 180 0 2 216 chain 22540 chr1 249250621 + 71059271 71059674 LTR7 482 + 0 482 117847 22 13 14 33 8 46 79 0 6 24 8 40 21 1 0 4 6 7 17 0 1 76 0 2 27 12 14 32 9 6 11 chain 554067 chr1 249250621 + 71060816 71066959 L1PA3long 6157 - 15 6157 940 2971 3 1 3005 13 14 151 chain 22029 chr1 249250621 + 71071308 71071699 L1MA2 4263 - 149 527 120109 10 1 0 46 7 0 11 8 9 72 1 0 9 35 34 16 0 3 9 7 0 81 8 5 46 0 3 24 chain 78228 chr1 249250621 + 71075752 71076645 L1PA5 6144 - 21 920 44400 654 0 2 172 0 4 67 chain 11876 chr1 249250621 + 71077929 71078063 L1PA2 6032 - 3 136 152716 17 1 0 116 chain 44662 chr1 249250621 + 71079168 71079683 L1PA7 6471 - 1602 2132 63335 94 0 3 69 0 4 25 0 8 327 chain 134177 chr1 249250621 + 71079683 71081277 L1PA7 6471 + 4853 6470 27169 176 0 1 163 0 6 244 7 16 162 1 0 100 0 2 58 0 6 683 chain 3271 chr1 249250621 + 71089505 71089541 MLT2B4 540 + 163 199 219590 36 chain 4162 chr1 249250621 + 71114176 71114225 MLT2A1 477 + 423 471 205075 35 1 0 13 chain 102551 chr1 249250621 + 71120056 71121249 L1PA7 6471 + 5273 6470 36119 350 0 5 508 0 1 325 2 0 8 chain 20275 chr1 249250621 + 71139092 71139478 MLT2D 439 + 10 426 126295 69 10 11 107 17 18 19 24 30 53 25 24 25 7 30 30 chain 7423 chr1 249250621 + 71174962 71175064 Tigger2 2703 + 903 1003 174634 85 2 0 15 chain 34001 chr1 249250621 + 71177925 71178470 MLT2A1 477 - 0 477 77616 52 100 31 9 0 2 179 0 1 23 0 1 10 5 2 167 chain 326724 chr1 249250621 + 71188482 71192968 L1PA11 4918 - 416 4911 12316 14 2 1 15 2 0 7 0 2 55 2 1 15 5 4 28 0 7 12 16 11 79 0 1 34 0 2 79 1 0 469 1 0 201 4 3 88 0 1 117 2 0 59 0 1 118 1 3 88 0 2 259 0 1 82 17 19 189 0 1 200 21 20 75 8 7 318 0 1 162 19 24 278 0 4 162 35 34 53 1 0 183 4 5 52 1 0 6 1 2 87 4 5 282 1 0 255 9 6 33 1 0 33 0 6 13 2 0 13 1 0 27 15 12 13 0 1 20 2 0 35 chain 3994 chr1 249250621 + 71197783 71197829 L1MD1 2063 - 1155 1201 207467 46 chain 158452 chr1 249250621 + 71200982 71202757 L1PA4 6152 + 4362 6152 23537 1733 1 11 35 0 5 6 chain 14411 chr1 249250621 + 71205100 71205259 MER9a2 513 - 354 513 143178 159 chain 74961 chr1 249250621 + 71217282 71218156 MER11D 897 + 0 897 46034 587 0 23 287 chain 22687 chr1 249250621 + 71223572 71223854 AluY 311 + 26 300 117133 107 15 7 160 chain 206723 chr1 249250621 + 71234375 71237399 L1PA14 3548 - 107 3157 18737 27 1 0 10 13 11 15 4 2 32 6 2 10 1 0 111 1 0 63 36 30 14 4 0 38 1 0 5 0 8 58 9 5 47 8 6 7 2 0 37 0 1 31 17 0 173 10 9 71 8 33 47 4 3 43 8 17 431 0 3 52 0 1 77 27 41 67 2 0 252 5 8 11 13 18 170 10 18 586 2 0 60 5 9 62 7 0 8 0 7 105 17 13 59 0 2 24 chain 30287 chr1 249250621 + 71260646 71261057 L1PA16 3655 + 2634 3076 83970 40 1 0 7 0 27 177 0 4 14 0 3 16 1 0 36 1 0 118 chain 171473 chr1 249250621 + 71261069 71265046 L1PA8 5853 - 0 3415 21889 112 2 1 52 11 10 70 2 0 8 1814 1246 144 0 1 149 0 4 63 0 2 120 0 1 166 0 3 310 5 6 171 1 0 332 1 0 444 chain 90069 chr1 249250621 + 71261660 71262879 L1PA4 6152 - 270 1504 39627 304 9 11 65 8 11 187 1 5 16 7 11 224 0 1 21 6 0 8 0 7 363 chain 9396 chr1 249250621 + 71262879 71262982 L1PA4 6152 + 5893 5996 163573 103 chain 13206 chr1 249250621 + 71262982 71263132 L1PA4 6152 + 5997 6152 147435 144 0 5 6 chain 115795 chr1 249250621 + 71268662 71270246 THE1B-int 1605 + 22 1599 32530 13 0 2 395 10 37 46 8 9 137 61 11 33 1 2 4 1 0 517 13 16 130 7 6 122 0 11 86 chain 220437 chr1 249250621 + 71279610 71282035 L1PA3long 6157 - 890 3315 17852 2425 chain 78486 chr1 249250621 + 71282035 71282913 L1PA3long 6157 + 5269 6147 44280 878 chain 110233 chr1 249250621 + 71298442 71300036 THE1B-int 1605 + 45 1599 34147 291 0 2 92 1 26 62 2 3 81 88 0 46 63 64 180 8 17 30 0 1 31 1 4 223 0 1 141 1 0 7 0 1 217 0 5 29 chain 24985 chr1 249250621 + 71300041 71300396 THE1B 368 + 0 368 104886 15 2 0 24 0 15 112 1 0 10 1 0 14 1 4 82 18 17 75 chain 3455 chr1 249250621 + 71305758 71305805 MADE1 96 - 34 96 216087 16 0 15 31 chain 122089 chr1 249250621 + 71309949 71311526 THE1A-int 1579 + 0 1573 30353 433 0 1 67 1 0 286 5 4 331 37 34 417 chain 23509 chr1 249250621 + 71354854 71355118 AluY 311 + 38 303 113075 94 0 1 170 chain 12563 chr1 249250621 + 71390427 71390582 MER41A 554 + 399 554 149994 155 chain 5013 chr1 249250621 + 71390663 71390720 MLT2A2 560 + 0 57 194992 57 chain 72597 chr1 249250621 + 71392164 71393011 L1P1 4361 - 20 864 47220 12 2 1 23 1 0 154 1 0 654 chain 124179 chr1 249250621 + 71396529 71398104 THE1A-int 1579 - 0 1579 29640 291 0 1 604 6 0 8 1 7 165 0 1 4 1 0 388 0 3 107 chain 120858 chr1 249250621 + 71404562 71406137 THE1A-int 1579 - 0 1579 30741 9 0 1 167 0 1 500 10 11 200 34 36 236 1 0 418 chain 28478 chr1 249250621 + 71406137 71406491 THE1A 353 - 0 353 91274 151 1 0 202 chain 6706 chr1 249250621 + 71408435 71408698 MLT1B 390 + 126 390 179639 49 159 161 20 1 0 34 chain 26804 chr1 249250621 + 71412887 71413238 THE1A 353 + 7 353 96970 104 1 0 201 5 1 40 chain 46188 chr1 249250621 + 71432198 71432740 L1PA8A 6298 - 22 565 61860 432 4 5 106 chain 31862 chr1 249250621 + 71451079 71451545 LTR3B_ 500 + 0 500 81077 78 1 0 55 6 5 145 0 18 41 0 3 14 0 1 45 44 21 21 0 37 16 chain 40421 chr1 249250621 + 71451570 71452090 MER41A 554 + 0 553 68703 29 6 37 27 0 1 332 0 1 126 chain 12711 chr1 249250621 + 71490603 71490756 L1PA4 6152 - 9 165 149413 52 1 3 91 0 1 9 chain 29552 chr1 249250621 + 71574400 71574722 L1PA3long 6157 - 3313 3635 85049 322 chain 298839 chr1 249250621 + 71574722 71578047 L1PA3long 6157 + 2830 6157 13488 873 0 1 242 0 1 407 0 4 952 0 4 698 8 0 145 chain 213888 chr1 249250621 + 71585479 71588021 L1PA5 6144 - 2664 5215 18224 234 0 3 41 3 0 825 0 8 55 3 1 364 1 2 135 0 1 137 0 4 60 0 1 367 0 1 70 9 0 18 1 4 79 6 7 134 chain 232781 chr1 249250621 + 71588021 71590697 L1PA5 6144 + 3465 6141 17153 2676 chain 11231 chr1 249250621 + 71590733 71590968 L1M3f 2199 - 303 541 155304 16 22 23 37 2 0 43 1 3 18 32 34 64 chain 78053 chr1 249250621 + 71599831 71600837 MER11A 1151 - 0 1151 44490 59 8 7 165 0 35 23 3 0 177 0 2 120 9 8 16 0 1 4 0 1 144 0 1 83 0 11 140 19 118 36 chain 241999 chr1 249250621 + 71615389 71618132 L1PA5 6144 + 3406 6144 16671 1891 0 4 475 7 0 115 1 0 163 7 8 33 2 0 49 chain 50462 chr1 249250621 + 71619346 71620041 MER50 708 + 0 683 58672 52 3 0 6 12 0 45 0 1 55 12 13 270 0 1 41 1 0 18 2 4 47 1 0 130 chain 9430 chr1 249250621 + 71623901 71624185 LTR1B 797 - 552 797 163411 15 89 49 20 1 2 20 33 32 55 9 10 42 chain 21271 chr1 249250621 + 71627764 71628107 THE1D 372 + 9 360 122956 95 2 0 6 5 6 46 24 32 16 13 14 136 chain 23583 chr1 249250621 + 71634715 71635067 THE1D 372 - 0 372 112672 146 46 67 55 1 0 104 chain 25339 chr1 249250621 + 71641358 71641660 AluSp 311 - 9 311 103028 302 chain 106652 chr1 249250621 + 71651904 71653156 L1PA5 6144 - 0 1257 35079 45 7 5 73 0 14 231 7 0 481 2 1 161 0 1 245 chain 7891 chr1 249250621 + 71680477 71680607 L1PB2 3958 - 122 250 171719 61 7 6 16 2 0 5 6 7 33 chain 496553 chr1 249250621 + 71681512 71687009 L1PA3long 6157 + 0 6156 7033 94 0 526 147 9 137 585 0 1 2213 0 1 870 0 1 272 0 1 45 0 1 1262 chain 11542 chr1 249250621 + 71721065 71721225 MSTA 426 + 263 426 154132 43 11 14 106 chain 26786 chr1 249250621 + 71741347 71741629 AluYb8 318 - 0 282 97026 282 chain 22847 chr1 249250621 + 71741880 71742231 THE1C 375 + 7 355 116361 118 13 10 47 14 14 110 8 9 35 1 0 5 chain 25517 chr1 249250621 + 71755400 71755765 THE1B 368 + 0 368 102152 17 2 0 23 0 5 127 3 2 28 2 0 26 0 2 35 12 13 90 chain 119259 chr1 249250621 + 71755771 71757340 THE1B-int 1605 + 6 1596 31312 426 22 49 510 28 22 74 7 0 47 1 2 280 0 4 104 0 2 70 chain 44025 chr1 249250621 + 71781021 71781531 MER9a1 513 - 0 513 64174 19 0 1 160 0 2 331 chain 2650 chr1 249250621 + 71785527 71785562 L1MD 993 - 589 622 231009 16 2 0 17 chain 74483 chr1 249250621 + 71785582 71786709 L1PB1 5432 - 8 1156 46283 4 1 0 16 1 0 13 1 0 16 1 9 20 2 0 6 53 40 5 3 0 15 1 0 43 1 0 15 4 3 61 4 0 12 10 8 24 3 0 9 1 2 198 0 50 51 2 0 177 21 18 333 chain 100193 chr1 249250621 + 71787147 71789680 L1PB 1623 + 112 1452 36719 8 1 0 45 1 3 20 1 0 4 2 0 7 0 1 69 2 1 121 6 8 19 1 0 66 1 0 76 0 3 503 2 0 233 4 6 70 1193 0 71 1 0 6 chain 69239 chr1 249250621 + 71788425 71789592 L1PA7 6471 + 5616 6467 48708 6 2 0 167 0 1 309 313 0 7 0 2 353 4 0 6 chain 25610 chr1 249250621 + 71811640 71811942 L1PA6 6164 + 5856 6158 101678 302 chain 3620 chr1 249250621 + 71817743 71817790 L1MA4 2864 - 60 105 213335 38 2 0 7 chain 4243 chr1 249250621 + 71844512 71844566 MLT1A0 366 + 0 53 203970 11 1 0 42 chain 37793 chr1 249250621 + 71844628 71845049 SVA_B 1603 + 1176 1597 72426 421 chain 34527 chr1 249250621 + 71862592 71863001 THE1B-int 1605 + 17 426 76870 409 chain 37035 chr1 249250621 + 71967750 71968211 LTR71A 459 + 0 459 73476 445 3 1 13 chain 32880 chr1 249250621 + 71976097 71976550 LTR71A 459 + 4 459 79396 50 0 4 7 9 5 85 0 2 43 1 2 15 1 2 226 2 0 14 chain 565481 chr1 249250621 + 71979381 71985425 L1HS 6032 + 1 6032 186 32 13 0 5999 chain 4998 chr1 249250621 + 72032290 72032353 MER58B 340 - 0 63 195161 63 chain 42313 chr1 249250621 + 72045678 72046150 L1PA3long 6157 + 5685 6157 66254 472 chain 29144 chr1 249250621 + 72067921 72068233 AluYa5 310 - 2 310 88348 111 4 0 197 chain 189375 chr1 249250621 + 72081865 72084472 Charlie3 2679 + 20 2668 20112 13 2 0 23 8 12 6 4 0 228 6 0 6 18 28 166 11 15 163 2 17 21 0 1 212 2 1 59 20 21 147 0 8 94 0 3 113 12 21 153 2 1 5 0 1 13 16 17 705 0 1 9 0 1 101 1 3 77 7 8 108 10 3 64 chain 29041 chr1 249250621 + 72091911 72092257 L1PA4 6152 - 16 368 88802 273 3 8 42 0 1 28 chain 63999 chr1 249250621 + 72092257 72092981 L1PA4 6152 + 5072 5793 51006 184 4 0 104 0 1 432 chain 93374 chr1 249250621 + 72094110 72095252 L1PA7 6471 - 12 1837 38545 658 12 16 116 2 1 46 7 684 157 0 3 144 chain 17923 chr1 249250621 + 72095252 72095478 L1PA7 6471 + 4416 4643 132436 71 0 1 155 chain 47638 chr1 249250621 + 72126391 72126955 L1PA7 6471 - 7 571 60744 564 chain 19687 chr1 249250621 + 72176777 72177046 AluY 311 + 39 304 128137 79 8 0 14 0 1 103 0 1 36 6 8 23 chain 16639 chr1 249250621 + 72185309 72185520 L1PA7 6471 - 3 210 136557 7 4 0 200 chain 29133 chr1 249250621 + 72215667 72215975 AluYb8 318 - 10 318 88395 308 chain 25358 chr1 249250621 + 72216091 72216438 THE1B 368 - 0 364 102900 45 4 13 4 1 0 92 5 13 32 1 0 36 0 2 127 chain 91426 chr1 249250621 + 72229980 72231254 HSMAR1 1287 + 0 1287 39155 106 5 6 11 1 2 403 0 1 80 0 3 144 1 5 104 48 0 9 13 66 155 1 2 34 4 0 13 0 1 142 chain 62213 chr1 249250621 + 72236405 72237140 L1PA7 6471 + 5732 6469 51793 199 1 0 207 0 1 125 0 2 203 chain 94164 chr1 249250621 + 72264731 72266169 L1PA7 6471 - 1 1138 38310 19 0 2 640 303 0 105 0 1 82 1 0 288 chain 91247 chr1 249250621 + 72270135 72271206 MER11B 1079 + 0 1063 39216 259 3 0 336 1 0 175 7 2 112 0 1 178 chain 177130 chr1 249250621 + 72279048 72281351 L1PA10 4194 - 33 2361 21238 11 1 0 34 3 0 34 1 0 65 0 1 4 7 6 267 0 1 58 0 1 119 3 6 238 1 19 614 3 7 51 20 23 769 chain 38945 chr1 249250621 + 72330954 72331438 L1PA7 6471 + 5996 6465 70810 265 16 0 190 0 1 13 chain 22854 chr1 249250621 + 72349261 72349522 L1PA5 6144 - 1 262 116314 261 chain 27383 chr1 249250621 + 72352658 72353036 Tigger2a 444 - 64 444 95019 60 27 29 291 chain 560410 chr1 249250621 + 72353886 72359907 L1PA2 6032 + 0 6021 331 6021 chain 29444 chr1 249250621 + 72408173 72408484 AluYa5 310 - 0 310 86890 184 1 0 126 chain 25752 chr1 249250621 + 72453978 72454252 AluYb9 318 + 38 312 101077 274 chain 8376 chr1 249250621 + 72481403 72481500 LTR14B 630 + 10 109 168993 6 0 2 91 chain 6571 chr1 249250621 + 72575838 72575917 L1HS 6032 + 5943 6032 180686 8 0 10 71 chain 21542 chr1 249250621 + 72586193 72586433 L1PA2 6032 - 1 241 121996 240 chain 23785 chr1 249250621 + 72600431 72600719 AluSp 311 - 23 311 111559 288 chain 84592 chr1 249250621 + 72602366 72603418 L1PA7 6471 + 5396 6470 41682 209 0 3 13 2 0 388 0 1 284 4 15 11 0 1 103 0 9 33 1 0 4 chain 110772 chr1 249250621 + 72613217 72614712 THE1A-int 1579 - 0 1579 34010 60 0 1 20 2 4 40 0 1 22 4 6 9 1 0 564 1 0 10 0 2 120 41 125 93 3 0 171 0 1 4 1 0 156 0 1 142 14 10 17 chain 26027 chr1 249250621 + 72614714 72615069 THE1A 353 - 2 353 99906 137 3 2 14 2 0 87 5 4 107 chain 206917 chr1 249250621 + 72679337 72682032 L1PA8 5853 + 3121 5830 18725 22 8 9 11 0 9 130 0 1 567 0 1 71 1 0 114 0 4 166 1 5 103 2 0 6 15 6 98 6 11 532 0 4 19 2 0 71 4 7 376 10 11 89 1 0 44 2 0 52 5 6 16 3 2 56 2 1 19 1 0 70 chain 41546 chr1 249250621 + 72701622 72702124 L1PA7 6471 + 5966 6470 67228 170 0 1 252 0 1 80 chain 24718 chr1 249250621 + 72737364 72737736 THE1A 353 + 2 353 106341 29 39 18 35 0 1 19 7 6 243 chain 13505 chr1 249250621 + 72752040 72752202 L1PA5 6144 - 14 170 146350 140 6 0 16 chain 7317 chr1 249250621 + 72771215 72771487 L1MA9 1812 - 147 398 175314 49 2 0 19 148 131 9 1 0 37 1 0 6 chain 29272 chr1 249250621 + 72778375 72778757 MLT2A1 477 - 78 477 87686 14 0 4 58 2 1 149 1 5 29 0 1 100 0 5 12 0 4 17 chain 442548 chr1 249250621 + 72778757 72784376 HERVL-int 5654 - 0 5654 8976 217 1 2 206 41 10 70 4 7 349 0 1 151 0 1 63 21 21 313 1 4 589 1 2 347 2 4 93 0 1 28 0 1 91 0 3 621 0 1 127 5 6 142 7 9 260 4 5 594 0 3 6 1 0 174 0 2 13 12 13 136 0 5 135 6 5 102 0 1 71 0 1 184 2 0 100 0 13 8 0 10 158 0 12 163 chain 30956 chr1 249250621 + 72784376 72784809 MLT2A1 477 - 0 477 82591 42 6 0 13 3 37 55 0 6 100 4 0 50 1 5 30 0 1 105 0 5 7 0 4 17 chain 7624 chr1 249250621 + 72805495 72805603 L1PA2 6032 + 5944 6032 173386 80 20 0 8 chain 43705 chr1 249250621 + 72819006 72819575 L1PA8 5853 - 0 565 64560 14 0 1 49 0 1 28 1 0 19 2 1 20 0 1 25 2 1 11 1 0 74 2 0 44 1 0 276 chain 26824 chr1 249250621 + 72847917 72848255 THE1A 353 + 13 351 96898 338 chain 189076 chr1 249250621 + 72853588 72855721 L1PA5 6144 - 5 2144 20138 11 0 1 832 0 1 4 7 10 398 0 1 881 chain 166306 chr1 249250621 + 72855721 72857581 L1PA5 6144 + 2131 3991 22451 1860 chain 34799 chr1 249250621 + 72857582 72858026 L1PA10 4194 - 2112 2556 76478 251 0 1 69 2 1 122 chain 33462 chr1 249250621 + 72858031 72858587 L1PA16 3655 + 3059 3588 78472 33 24 1 20 0 1 5 3 0 5 9 2 75 1 0 91 16 14 117 0 1 110 1 0 4 28 36 14 chain 7532 chr1 249250621 + 72864322 72864417 MLT1D 503 + 398 493 173962 95 chain 71299 chr1 249250621 + 72869972 72871203 L1PA7 6471 + 5535 6465 47798 88 7 12 46 13 19 98 311 0 133 1 0 181 1 3 336 0 1 7 3 0 6 chain 276339 chr1 249250621 + 72890677 72894126 L1PA8 5853 - 3 3428 14851 89 2 1 7 0 17 30 6 7 6 2 0 14 2 1 70 2 0 45 1 0 522 32 0 34 2 0 70 4 5 29 0 2 1606 10 0 119 0 3 290 0 1 434 5 7 16 chain 68921 chr1 249250621 + 72894452 72895316 L1P2 5180 + 1836 2690 48850 485 15 0 26 0 1 44 0 4 294 chain 89985 chr1 249250621 + 72902394 72903829 L1MA1 4479 - 289 1675 39654 18 7 0 16 13 5 9 1 0 37 2 0 27 1 0 69 0 1 19 0 4 33 3 0 5 1 0 58 17 18 9 1 0 17 13 11 8 1 0 71 1 0 16 1 0 5 1 0 19 1 0 77 7 9 109 3 0 132 2 0 5 0 2 114 6 4 10 7 6 69 4 0 21 11 9 39 9 7 117 2 0 27 1 0 92 1 0 17 11 3 42 chain 38721 chr1 249250621 + 72928787 72929224 L1PA4 6152 + 5707 6143 71124 389 1 0 47 chain 59063 chr1 249250621 + 72957564 72958238 L1PA5 6144 + 5466 6139 53357 174 1 0 499 chain 47201 chr1 249250621 + 72996800 72997314 L1PA3long 6157 - 112 626 61044 514 chain 8931 chr1 249250621 + 72997314 72997433 L1PA3long 6157 + 6042 6157 165974 38 3 2 70 3 0 5 chain 42127 chr1 249250621 + 73005780 73006311 MLT2A2 560 - 1 560 66473 249 0 3 97 0 23 170 1 3 14 chain 24255 chr1 249250621 + 73060321 73060617 AluSq 315 + 0 294 108913 134 3 1 159 chain 25062 chr1 249250621 + 73153507 73153815 THE1B-int 1605 + 1278 1593 104503 241 0 5 6 0 2 61 chain 3235 chr1 249250621 + 73190407 73190443 L1MA4 2864 - 1896 1932 220318 36 chain 16061 chr1 249250621 + 73192811 73193130 L1MA1 4479 + 3876 4172 138176 52 0 1 5 46 39 105 1 0 27 7 0 27 2 0 10 1 0 9 1 0 5 5 0 16 chain 23371 chr1 249250621 + 73203896 73204253 THE1A 353 - 0 353 113811 154 3 0 47 43 42 110 chain 5545 chr1 249250621 + 73224128 73224472 MSTD 398 - 22 398 189610 36 258 290 50 chain 41030 chr1 249250621 + 73225291 73226147 L1PB3 3668 - 73 860 67857 13 1 0 12 14 10 31 3 1 25 1 0 9 65 40 50 52 51 63 1 0 58 25 19 12 0 6 50 0 2 64 28 4 8 2 0 61 4 0 18 2 0 31 25 23 44 2 0 82 chain 43486 chr1 249250621 + 73257284 73257785 MER9a1 513 - 0 513 64832 469 0 12 32 chain 214706 chr1 249250621 + 73278560 73280968 L1PA3long 6157 - 0 2409 18184 19 4 5 119 9 10 626 1 0 1630 chain 20831 chr1 249250621 + 73280971 73281204 L1PA3long 6157 + 3496 3730 124506 93 0 1 140 chain 99956 chr1 249250621 + 73293633 73294735 L1PA4 6152 + 5048 6151 36790 100 0 1 1002 chain 132647 chr1 249250621 + 73306619 73308826 L1PB1 5432 + 3205 5423 27488 68 1 2 109 1 0 4 0 1 51 16 61 123 22 20 60 4 3 21 5 6 37 5 4 189 0 1 91 11 13 6 0 1 109 5 4 4 0 1 108 0 2 310 10 7 186 13 21 62 13 6 114 95 93 11 3 0 20 1 0 8 3 2 14 17 11 51 2 1 10 6 5 45 1 0 15 74 57 17 1 0 12 10 9 13 1 0 19 chain 545508 chr1 249250621 + 73364451 73370775 L1PA2 6032 + 0 6032 2009 339 1 3 1368 306 0 554 0 4 601 0 2 1358 0 4 592 0 1 1040 8 9 157 chain 26420 chr1 249250621 + 73366163 73366465 AluYa5 310 - 11 310 98338 54 7 4 241 chain 141583 chr1 249250621 + 73374689 73427942 L1PA7 6471 - 2 3886 25882 10 3 0 73 11 4 65 8 7 346 0 11 142 7 0 111 0 2 204 1 0 539 4 0 78 1 3 113 50433 1074 145 1 0 115 0 1 257 3 6 461 7 3 60 1 0 54 chain 3317 chr1 249250621 + 73380809 73380858 MADE1 96 - 1 51 218635 22 1 2 26 chain 4745 chr1 249250621 + 73383653 73383812 L1MA8 2339 + 2047 2185 197969 24 74 52 34 5 6 22 chain 226507 chr1 249250621 + 73427942 73430803 L1PA7 6471 + 3703 6463 17509 126 1 0 475 0 5 646 6 5 149 95 0 257 0 1 71 1 0 59 9 1 663 15 16 4 1 0 36 1 0 246 chain 7133 chr1 249250621 + 73429345 73429429 L1PA7 6471 + 4237 4321 175419 84 chain 39125 chr1 249250621 + 73446128 73446579 LTR7 482 - 0 482 70568 182 9 40 260 chain 245958 chr1 249250621 + 73447711 73450721 HERVH-int 3825 - 708 3825 16454 36 9 11 962 0 2 85 6 16 123 3 0 166 15 42 220 0 2 377 1 0 294 0 3 13 10 13 35 0 41 24 26 22 12 1 0 14 29 0 19 1 0 15 1 0 35 0 57 478 chain 39270 chr1 249250621 + 73450723 73451173 LTR7 482 - 0 482 70369 190 1 32 27 0 1 232 chain 37269 chr1 249250621 + 73453483 73453932 LTR7 482 - 0 482 73136 49 12 14 123 0 31 265 chain 284479 chr1 249250621 + 73455196 73458836 HERVH-int 3825 - 9 3825 14386 13 0 1 126 1 0 76 6 8 261 1 211 775 0 32 376 1 0 4 0 1 216 8 35 225 0 2 63 0 10 158 15 0 444 0 1 48 2 1 11 7 27 35 1 0 7 23 0 11 21 0 7 3 0 13 5 18 20 2 1 8 2 1 39 37 31 12 66 0 475 3 0 13 chain 3164 chr1 249250621 + 73458308 73458345 HERVH-int 3825 - 3245 3281 215276 10 1 0 26 chain 39058 chr1 249250621 + 73458838 73459285 LTR7 482 - 0 482 70652 23 0 4 160 0 31 264 chain 18893 chr1 249250621 + 73486850 73487231 L1PA16 3655 - 67 454 130388 10 3 0 103 91 99 8 0 1 74 2 0 19 9 10 35 0 1 27 chain 23789 chr1 249250621 + 73505544 73505821 L1PA7 6471 + 6184 6461 111537 277 chain 45717 chr1 249250621 + 73521808 73522351 L1PA6 6164 - 3 542 62302 8 4 0 531 chain 21452 chr1 249250621 + 73525350 73525686 THE1C 375 - 39 375 122329 21 0 1 7 1 0 108 51 50 61 0 1 87 chain 334549 chr1 249250621 + 73547323 73551417 L1PA6 6164 - 3 4129 12037 7 2 0 780 0 9 150 0 9 215 1 0 342 1 0 321 2 1 75 0 1 437 0 9 269 7 6 76 0 1 209 0 4 50 0 1 332 10 9 51 1 5 212 1 0 195 0 1 59 2 0 88 6 8 142 0 1 51 chain 8152 chr1 249250621 + 73572951 73573065 L1PA16 3655 + 3451 3578 170217 53 0 13 25 0 2 6 2 0 28 chain 77709 chr1 249250621 + 73594980 73595948 LTR5_Hs 974 - 0 974 44652 103 20 18 12 15 22 285 5 6 528 chain 300466 chr1 249250621 + 73599721 73609502 L1PB1 5432 - 48 4702 13398 14 1 0 24 2 0 14 1 0 5 3 1 13 28 19 14 1 0 40 17 25 47 2 0 9 47 34 11 4 0 11 4535 5 210 0 1 80 0 11 175 0 1 201 20 14 51 23 25 182 0 1 58 15 8 338 4 17 112 0 2 6 0 4 176 10 9 4 1 0 74 316 122 5 0 2 283 3 23 69 0 7 7 18 7 152 29 26 43 0 5 94 0 1 4 8 0 15 0 1 12 2 1 274 8 32 175 1 0 162 6 1 45 0 6 21 3 4 40 17 18 96 0 4 159 0 1 11 7 1 9 1 4 210 446 0 148 0 6 122 1 0 6 0 1 115 0 1 18 6 7 13 0 1 18 chain 35724 chr1 249250621 + 73600030 73600534 L1PB1 5432 - 334 850 75236 40 1 0 81 6 24 108 0 1 6 1 0 40 5 1 92 0 2 82 4 1 38 chain 3417 chr1 249250621 + 73646999 73647046 MER52C 1267 - 961 1006 216820 28 2 0 17 chain 44390 chr1 249250621 + 73648882 73649887 LTR10F 562 + 0 562 63701 79 119 0 153 0 3 8 336 0 74 0 4 86 0 6 92 1 0 57 chain 4295 chr1 249250621 + 73649253 73649300 LTR10F 562 + 168 215 203306 47 chain 9650 chr1 249250621 + 73649336 73649450 LTR10F 562 + 111 225 162350 114 chain 4853 chr1 249250621 + 73649496 73649555 LTR10F 562 + 159 218 196749 59 chain 128638 chr1 249250621 + 73659274 73660690 L1HS 6032 + 1723 3139 28411 1416 chain 194709 chr1 249250621 + 73704107 73706337 L1PA5 6144 + 3899 6127 19603 1468 4 3 602 1 0 155 chain 10043 chr1 249250621 + 73713919 73714096 Tigger3a 397 + 142 373 160364 4 1 0 35 1 4 94 24 76 18 chain 45330 chr1 249250621 + 73719791 73720392 LTR12_ 688 + 0 688 62682 163 24 7 184 0 103 42 2 3 186 chain 29051 chr1 249250621 + 73753604 73753915 AluYa5 310 - 0 310 88760 184 1 0 126 chain 86144 chr1 249250621 + 73757128 73758070 L1PA3long 6157 + 5006 5947 41100 11 1 0 930 chain 139023 chr1 249250621 + 73795247 73796833 L1PA4 6152 - 9 1606 26294 61 2 0 263 0 1 510 0 4 462 0 8 288 chain 16974 chr1 249250621 + 73802493 73802723 AluY 311 + 14 228 135654 73 16 0 141 chain 120638 chr1 249250621 + 73809133 73810700 THE1B-int 1605 + 0 1600 30824 416 9 34 4 0 1 505 0 1 186 6 10 338 4 5 18 0 1 81 chain 34967 chr1 249250621 + 73824788 73825252 LTR71A 459 + 0 459 76235 56 4 0 141 8 9 239 2 0 14 chain 88165 chr1 249250621 + 73872999 73874057 MER11C 1089 + 0 1073 40312 225 0 5 20 0 1 62 0 4 371 0 4 45 0 1 335 chain 189424 chr1 249250621 + 73894598 73896764 L1PA5 6144 - 0 2311 20105 147 3 0 190 1 2 504 0 4 419 0 1 322 7 147 17 0 2 556 chain 34910 chr1 249250621 + 73896764 73897158 L1PA5 6144 + 3429 3823 76328 394 chain 24964 chr1 249250621 + 73905554 73905892 THE1B 368 + 0 344 104987 15 2 0 22 0 5 130 1 0 10 0 2 8 3 5 147 chain 93846 chr1 249250621 + 73915455 73916524 L1PA3long 6157 + 5102 6157 38401 910 0 7 99 30 9 30 chain 127451 chr1 249250621 + 73936142 73937542 L1PA4 6152 + 4751 6151 28701 1400 chain 495352 chr1 249250621 + 73951990 73957975 L1PA6 6164 - 13 6163 7107 15 1 2 6 4 0 135 8 0 255 0 2 420 0 3 16 0 4 106 18 14 519 4 5 203 0 1 741 0 3 31 0 1 18 0 1 4 1 0 122 5 7 433 5 6 152 1 2 262 7 152 109 0 4 63 8 0 476 0 5 23 0 2 574 1 0 592 0 12 95 0 1 197 14 15 341 chain 2898 chr1 249250621 + 74023608 74023640 THE1C-int 1605 + 123 155 227076 32 chain 84753 chr1 249250621 + 74028245 74029274 L1PA7 6471 + 5439 6466 41614 163 2 1 5 0 1 12 1 0 48 1 0 4 0 1 462 1 0 330 chain 11148 chr1 249250621 + 74072692 74072864 THE1D 372 - 0 172 155644 29 9 10 105 8 7 21 chain 9144 chr1 249250621 + 74084868 74084979 L1PA5 6144 + 6033 6144 164836 111 chain 122599 chr1 249250621 + 74131079 74132649 THE1A-int 1579 + 0 1579 30193 49 1 0 4 11 10 143 1 2 33 0 3 620 5 6 26 5 6 374 0 4 227 3 4 68 chain 111502 chr1 249250621 + 74132933 74134324 L1P1 4361 - 2947 4357 33812 139 0 1 82 1 4 358 12 10 253 18 35 528 chain 67753 chr1 249250621 + 74149338 74150129 L1PA7 6471 - 2 794 49344 155 5 6 631 chain 322537 chr1 249250621 + 74151676 74155974 L1PA8 5853 - 0 5378 12501 93 1 0 17 1 0 50 28 40 44 2 0 45 1 0 60 0 1 490 9 8 597 54 4 44 12 7 19 12 3 742 6 1023 61 0 1 411 0 3 31 2 3 23 40 22 380 1 5 5 0 1 474 0 1 33 4 3 15 0 2 124 25 21 161 0 3 40 0 1 21 2 128 118 chain 24743 chr1 249250621 + 74162624 74162923 AluY 311 + 0 295 106207 123 1 0 3 3 0 169 chain 45308 chr1 249250621 + 74180885 74181447 L1PA7 6471 - 6 570 62708 144 24 25 338 0 1 56 chain 9017 chr1 249250621 + 74195988 74196123 MER2 342 - 151 284 165509 20 1 0 61 0 1 29 6 0 8 0 4 10 chain 5847 chr1 249250621 + 74215218 74215309 5S 121 - 31 121 186706 53 15 14 23 chain 34103 chr1 249250621 + 74233295 74233682 L1PA4 6152 - 16 404 77475 323 0 1 64 chain 4460 chr1 249250621 + 74253850 74253902 MER70A 477 - 0 52 201241 52 chain 61766 chr1 249250621 + 74272670 74273373 L1PA4 6152 + 5438 6142 52008 404 0 1 299 chain 4619 chr1 249250621 + 74282733 74282790 L1M1 2793 + 1726 1783 199408 57 chain 8614 chr1 249250621 + 74295081 74295190 MER85 139 + 7 126 167658 81 0 10 28 chain 3596 chr1 249250621 + 74320702 74320747 MER53 195 - 12 57 213721 45 chain 6464 chr1 249250621 + 74326800 74326991 MLT2B2 565 - 0 173 181522 23 16 11 12 8 0 3 0 2 24 55 48 50 chain 12039 chr1 249250621 + 74369286 74369463 L1MA1 4479 + 3930 4102 152032 17 1 0 5 3 0 126 10 9 15 chain 127287 chr1 249250621 + 74431207 74432809 L1PA8 5853 - 1307 2948 28746 109 2 0 565 3 2 61 5 0 132 0 1 289 1 12 100 0 41 13 6 0 316 chain 96132 chr1 249250621 + 74432811 74434114 L1PA8 5853 + 4553 5853 37784 48 5 7 114 4 5 283 2 0 47 0 1 20 2 0 483 9 12 37 2 0 60 20 18 56 2 1 18 1 0 90 chain 13403 chr1 249250621 + 74448114 74448477 THE1B 368 - 0 368 146700 49 15 13 56 0 62 10 126 70 24 23 24 60 chain 72643 chr1 249250621 + 74450338 74451345 L1PB 1623 - 179 1217 47197 107 10 31 56 21 22 73 4 5 169 0 1 465 3 1 17 0 1 5 1 9 76 chain 184874 chr1 249250621 + 74480049 74482609 L1P2 5180 + 3 2542 20511 131 18 17 42 2 1 46 57 121 30 14 13 42 19 0 69 1 0 47 54 3 174 22 1 47 0 15 447 0 1 181 0 5 715 1 2 166 12 0 223 chain 81683 chr1 249250621 + 74494728 74495667 L1PA5 6144 - 1830 2786 42896 335 1 18 603 chain 158650 chr1 249250621 + 74495668 74497451 L1PA5 6144 + 4346 6139 23512 179 0 1 85 0 9 1519 chain 155015 chr1 249250621 + 74504187 74506553 L1PA10 4194 + 175 2511 23977 12 5 3 7 3 0 10 2 0 5 54 46 14 2 0 15 69 42 6 2 0 21 92 73 59 2 0 5 1 0 5 0 1 156 8 6 96 6 7 127 0 1 45 4 3 185 1 43 530 0 2 65 7 0 57 1 2 541 6 8 107 2 0 31 chain 250266 chr1 249250621 + 74510158 74513269 L1PA7 6471 + 3315 6453 16231 39 1 2 193 0 4 19 0 1 71 1 0 88 0 1 521 5 6 293 1 0 4 0 1 116 0 4 582 3 6 65 0 7 284 2 0 308 0 8 356 14 16 8 2 0 135 chain 54882 chr1 249250621 + 74562178 74562804 L1PA5 6144 - 4946 5575 55781 46 0 3 580 chain 434091 chr1 249250621 + 74562804 74567753 L1PA5 6144 + 1188 6144 9212 234 0 1 11 4 9 917 0 2 802 2 1 1592 1 0 398 0 1 988 chain 74540 chr1 249250621 + 74587273 74588140 L1PA4 6152 - 0 879 46241 6 0 5 706 1 4 129 0 1 4 0 3 21 chain 45735 chr1 249250621 + 74588140 74588651 L1PA4 6152 + 4767 5278 62284 511 chain 5050 chr1 249250621 + 74589617 74589678 L1MA3 4352 + 2818 2879 194632 61 chain 136678 chr1 249250621 + 74596439 74598034 L1PA5 6144 + 3004 4609 26697 287 14 20 61 1 2 616 1 0 351 0 4 264 chain 134515 chr1 249250621 + 74598034 74599555 L1PA5 6144 + 4618 6144 27108 267 0 1 435 0 3 627 4 5 188 chain 68942 chr1 249250621 + 74602966 74603787 L1PA7 6471 + 5649 6468 48841 620 0 1 189 3 0 9 chain 48831 chr1 249250621 + 74632464 74633435 L1PB1 5432 + 4645 5422 59855 69 1 0 83 1 9 11 11 5 195 6 0 86 13 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 2 1 48 153 0 11 1 0 16 1 0 6 62 42 26 1 0 22 1 0 12 1 0 18 chain 5086 chr1 249250621 + 74642868 74642932 HERVL-int 5654 - 3482 3546 194230 64 chain 17899 chr1 249250621 + 74642932 74643170 MLT2A1 477 + 208 475 133105 115 1 0 61 5 1 10 5 39 41 chain 25128 chr1 249250621 + 74652639 74652998 L1PB2 3958 + 3461 3838 104138 34 0 16 34 1 0 43 1 9 20 1 0 64 1 0 71 2 0 23 1 0 63 chain 45949 chr1 249250621 + 74676465 74676966 L1PA3long 6157 - 722 1229 62083 50 0 1 224 0 5 227 chain 59177 chr1 249250621 + 74676966 74677616 L1PA3long 6157 + 5507 6157 53294 650 chain 91573 chr1 249250621 + 74706476 74707526 L1PA4 6152 - 9 1066 39100 139 0 1 56 2 11 201 7 0 427 0 4 218 chain 96843 chr1 249250621 + 74718170 74719596 LTR12C 1709 - 0 1709 37598 84 14 13 297 0 1 5 1 0 60 1 0 21 51 20 75 0 47 62 0 1 32 0 278 201 30 31 10 1 0 7 4 0 197 0 1 23 60 53 190 chain 32345 chr1 249250621 + 74720368 74720793 MER41C 542 - 7 454 80281 196 6 27 185 1 2 37 chain 25112 chr1 249250621 + 74720793 74721057 AluYa5 310 + 37 301 104218 264 chain 10280 chr1 249250621 + 74750393 74750522 MER85 139 - 0 139 159236 22 1 0 7 0 11 99 chain 28092 chr1 249250621 + 74774770 74775068 AluYf4 310 + 0 298 92676 298 chain 30746 chr1 249250621 + 74790605 74791047 LTR22A 463 + 0 461 82961 223 15 16 5 0 1 12 1 0 73 8 27 63 2 0 22 0 1 18 chain 102345 chr1 249250621 + 74802035 74803169 L1PA3long 6157 - 0 1133 36184 10 1 0 511 0 1 606 1 0 5 chain 541855 chr1 249250621 + 74812700 74818785 L1PA4 6152 - 15 6151 2531 835 0 4 900 0 2 455 9 24 78 7 18 1015 0 4 244 0 2 1312 1 0 1103 1 15 125 chain 2920 chr1 249250621 + 74844459 74844501 MLT1J2 417 - 341 378 226698 30 5 0 7 chain 28015 chr1 249250621 + 74860094 74860446 LTR71B 605 + 0 360 92949 103 0 1 22 5 15 5 2 0 81 1 0 133 chain 5706 chr1 249250621 + 74862683 74862751 LTR18B 584 + 329 397 188053 68 chain 11244 chr1 249250621 + 74868478 74868632 MER30 238 + 31 204 155242 17 5 0 56 1 25 75 chain 12716 chr1 249250621 + 74871941 74872119 MER30 238 + 46 238 149398 53 0 25 6 4 0 6 7 0 102 chain 11911 chr1 249250621 + 74886596 74886735 MER85 139 - 0 139 152547 139 chain 275033 chr1 249250621 + 74910905 74915151 L1PA2 6032 - 2 3008 14921 369 319 0 1450 922 0 139 0 1 1047 chain 84141 chr1 249250621 + 74913061 74913957 L1HS 6032 + 5136 6032 41842 896 chain 87967 chr1 249250621 + 74915152 74916100 L1PA2 6032 + 2078 3026 40389 948 chain 10677 chr1 249250621 + 74924550 74924738 L1PA16 3655 - 36 199 157497 16 5 0 7 24 7 12 3 0 121 chain 5661 chr1 249250621 + 74958316 74958462 L1MB5 1630 + 1091 1239 188464 45 1 0 4 58 61 38 chain 25256 chr1 249250621 + 74966039 74966316 AluYa5 310 + 36 310 103444 61 2 0 35 1 0 178 chain 10746 chr1 249250621 + 74973845 74973966 L1PA5 6144 + 6017 6138 157218 121 chain 24924 chr1 249250621 + 74976574 74976877 AluSq10 312 - 15 312 105198 226 6 0 71 chain 64205 chr1 249250621 + 74984565 74985255 L1HS 6032 - 0 690 50914 690 chain 16058 chr1 249250621 + 74989459 74989664 L1PA7 6471 - 2 206 138186 10 3 0 7 0 1 142 0 1 43 chain 18829 chr1 249250621 + 74998161 74998369 L1PA3long 6157 - 0 208 130580 208 chain 108160 chr1 249250621 + 74998369 74999557 L1PA3long 6157 + 4766 5958 34667 522 0 4 666 chain 372092 chr1 249250621 + 75019708 75024259 L1PA7 6471 + 1848 6464 11021 426 0 1 157 0 1 275 0 3 93 0 1 801 1 0 43 0 60 333 7 6 149 0 7 729 19 16 671 2 1 66 10 9 190 2 0 421 0 1 156 chain 3927 chr1 249250621 + 75063495 75063542 L1PREC2 3366 + 2698 2745 208464 47 chain 12459 chr1 249250621 + 75078596 75078780 MER30 238 - 0 190 150421 48 3 0 68 10 19 55 chain 6420 chr1 249250621 + 75116165 75116254 MER44B 551 - 1 99 181864 19 2 11 68 chain 79560 chr1 249250621 + 75136125 75137292 MER11A 1151 + 0 1151 43799 55 0 99 76 1 0 62 10 6 19 0 1 125 0 3 92 0 1 296 75 1 26 43 0 58 0 1 46 1 0 16 4 5 42 4 5 116 chain 2747 chr1 249250621 + 75182027 75182056 MLT2D 439 + 410 439 229530 29 chain 112117 chr1 249250621 + 75191298 75192875 THE1B-int 1605 - 13 1590 33635 411 0 1 205 4 0 167 0 1 24 21 30 77 2 1 15 0 1 61 6 1 146 64 47 63 22 26 64 0 1 134 0 3 27 1 8 63 chain 70582 chr1 249250621 + 75205716 75206601 LTR12 884 - 0 884 48124 320 1 0 52 0 3 130 2 0 17 0 25 248 25 0 65 1 0 24 chain 2186 chr1 249250621 + 75206486 75206511 LTR12 884 - 729 754 122751 25 chain 225114 chr1 249250621 + 75207436 75210270 HERV9-int 5642 - 0 5642 17586 17 2 0 3 4 0 19 28 5 13 1 0 60 2 1 26 3 1 9 1 0 27 16 14 215 6 5 40 2 0 551 0 1795 592 0 1 815 0 1 181 4 0 98 0 1054 99 chain 9012 chr1 249250621 + 75210602 75210760 LTR12 884 - 21 209 165529 75 17 14 10 3 36 53 chain 41083 chr1 249250621 + 75210760 75211262 LTR12 884 - 211 712 67791 296 2 0 32 4 5 168 chain 3445 chr1 249250621 + 75211262 75211302 LTR12 884 - 819 859 216279 40 chain 2279 chr1 249250621 + 75211303 75211328 LTR12 884 - 859 884 235593 25 chain 123609 chr1 249250621 + 75221868 75223440 THE1B-int 1605 + 0 1600 29837 358 6 10 62 1 26 325 17 16 803 chain 69221 chr1 249250621 + 75253428 75254231 L1PA5 6144 + 5287 6135 48710 581 3 49 114 1 0 104 chain 9857 chr1 249250621 + 75268757 75268876 MER85 139 + 10 139 161307 79 0 10 40 chain 67999 chr1 249250621 + 75279577 75280392 L1PA6 6164 - 2 818 49247 96 0 1 48 1 0 4 19 20 647 chain 37603 chr1 249250621 + 75315583 75316204 L1MA1 4479 - 289 885 72680 18 30 21 9 1 0 35 2 0 29 1 0 126 3 0 6 2 1 86 1 0 13 2 0 17 1 0 58 11 12 4 1 0 16 2 0 25 1 0 72 5 4 44 chain 9828 chr1 249250621 + 75326114 75326230 MSTA-int 1630 - 0 116 161464 116 chain 138342 chr1 249250621 + 75338001 75339585 L1PA5 6144 - 6 1627 26425 738 0 10 596 3 0 205 0 30 42 chain 6980 chr1 249250621 + 75342714 75342801 L1PB4 2604 + 209 296 177603 87 chain 534610 chr1 249250621 + 75342805 75348826 L1PA3long 6157 + 0 6147 3639 152 18 19 50 4 0 215 3 1 339 0 128 525 0 1 1126 1 0 4 0 1 110 0 1 232 0 1 1662 2 1 624 0 1 954 chain 122721 chr1 249250621 + 75350068 75351638 THE1B-int 1605 + 0 1599 30154 426 0 25 228 32 36 884 chain 4269 chr1 249250621 + 75353960 75354020 L1P5 443 + 51 114 203629 48 1 4 11 chain 194413 chr1 249250621 + 75364550 75366750 L1PA4 6152 - 1178 3380 19637 191 0 1 298 0 1 1711 chain 103596 chr1 249250621 + 75366750 75367899 L1PA4 6152 + 5002 6151 35752 1149 chain 447900 chr1 249250621 + 75381390 75386758 L1PA6 6164 - 8 6126 8816 76 0 1 57 29 30 15 2 3 147 0 1 457 0 1 250 1 0 139 0 1 329 1 0 1012 0 1 446 0 1 606 0 4 144 0 1 107 0 2 110 0 2 259 1 0 421 0 1 32 0 1 267 0 1 39 0 1 216 0 1 24 9 5 114 6 741 52 chain 113182 chr1 249250621 + 75387330 75388686 L1PA6 6164 + 4779 6150 33321 199 0 1 89 7 1 245 0 1 657 29 48 130 chain 15512 chr1 249250621 + 75388966 75389156 L1PREC2 3366 + 2148 2340 139850 135 0 2 55 chain 7527 chr1 249250621 + 75416815 75416908 THE1B 368 + 0 105 173995 14 0 12 79 chain 118244 chr1 249250621 + 75416908 75418296 LTR12C 1709 - 0 1709 31711 481 0 4 107 9 325 265 1 2 211 1 0 4 0 1 309 chain 23169 chr1 249250621 + 75419054 75419339 L1PA7 6471 - 8 293 114819 60 1 0 83 6 7 135 chain 4402 chr1 249250621 + 75445102 75445155 MLT1J2 417 - 245 298 201907 53 chain 533370 chr1 249250621 + 75452202 75458308 L1PA4 6152 + 6 6151 3798 821 25 8 326 0 3 80 1 0 495 1 0 947 0 1 298 0 41 157 1 0 227 0 4 418 0 9 803 0 1 156 3 0 385 0 1 190 0 1 625 0 1 147 chain 105935 chr1 249250621 + 75480279 75481849 L1PA11 4918 - 1655 3139 35272 201 0 3 165 2 1 11 36 0 164 3 0 179 4 0 156 2 0 14 0 3 5 11 1 10 10 1 58 0 6 21 0 4 20 12 0 6 0 4 29 0 1 177 23 0 7 13 15 118 6 0 66 7 4 34 chain 89284 chr1 249250621 + 75481849 75483074 L1PA11 4918 + 3288 4519 39830 378 2 1 31 0 16 137 1 2 90 7 5 4 0 1 254 0 5 101 2 1 17 5 0 57 7 6 13 2 1 66 2 0 14 1 0 11 0 1 8 4 0 11 chain 92699 chr1 249250621 + 75508224 75509408 L1PA8 5853 + 4672 5853 38747 159 0 1 159 1 0 16 0 2 75 0 2 476 1 0 45 3 1 70 2 1 9 1 0 52 2 1 11 9 8 93 chain 120901 chr1 249250621 + 75511901 75514338 L1MA1 4479 + 2063 4162 30727 19 2 3 21 0 1 69 7 121 36 18 11 67 0 1 35 0 3 6 3 1 52 1 2 5 1 0 45 0 3 17 0 4 17 3 0 37 2 0 29 1 0 93 0 3 9 2 0 31 1 0 62 1 0 70 1 4 18 1 0 26 3 1 173 7 5 12 4 0 51 495 78 77 6 0 8 3 0 129 1 0 25 1 0 16 35 36 73 1 0 46 1 0 25 3 1 12 14 13 36 1 2 23 1 0 19 2 0 14 1 0 88 9 5 100 0 1 16 10 9 29 2 0 29 7 6 9 1 0 11 chain 5792 chr1 249250621 + 75524776 75524842 L1MA2 4263 + 3023 3089 187237 66 chain 11654 chr1 249250621 + 75568415 75568559 L1PA4 6152 - 0 153 153671 6 0 5 10 0 4 128 chain 539185 chr1 249250621 + 75572550 75578567 L1PA3long 6157 - 4 6153 2954 1793 0 2 1065 0 1 103 1 0 1234 4 3 568 0 1 479 9 137 31 0 1 29 1 2 387 1 0 163 0 1 149 chain 514890 chr1 249250621 + 75641362 75647517 L1PA6 6164 - 4 6164 5683 29 2 0 136 1 2 678 1 0 167 4 5 108 1 0 1419 0 1 14 0 1 78 0 1 285 0 1 12 1 0 33 0 1 412 0 1 441 16 1 103 1 0 982 3 5 419 0 1 40 0 1 377 10 16 11 0 8 371 chain 4942 chr1 249250621 + 75720567 75720645 MER30 238 - 86 179 195781 18 10 25 50 chain 501072 chr1 249250621 + 75723437 75729824 L1PA7 6471 + 0 6470 6784 218 1 0 4 24 32 140 6 10 251 12 27 68 1 0 138 14 15 216 21 22 1093 0 1 6 0 1 259 0 2 129 0 3 164 0 1 575 0 2 171 14 18 438 3 7 124 0 20 32 1 4 9 1 0 116 0 3 109 4 9 225 24 28 183 0 1 413 0 2 60 1 0 73 2 3 196 1 0 117 1 2 716 1 2 12 chain 164014 chr1 249250621 + 75737376 75739710 L1PB2 3958 - 120 2381 22807 63 1 0 26 2 0 68 1 0 63 1 0 152 0 1 13 4 0 14 2 0 50 0 1 13 5 0 13 1 0 54 2 0 40 0 3 49 82 1 20 0 1 11 1 2 97 0 2 129 0 1 25 3 1 147 0 3 65 1 0 17 7 14 196 3 0 163 0 2 63 0 4 16 0 1 182 4 5 70 1 0 207 1 2 64 0 1 58 0 3 51 0 1 13 chain 22783 chr1 249250621 + 75746251 75746631 THE1C 375 + 0 375 116665 14 2 0 32 73 71 232 1 0 26 chain 14490 chr1 249250621 + 75768185 75768454 MER44B 551 - 1 278 142916 16 18 18 23 27 32 56 11 13 43 0 1 75 chain 11719 chr1 249250621 + 75769504 75769649 L1PA6 6164 + 6019 6162 153384 137 2 0 6 chain 57853 chr1 249250621 + 75788628 75789276 L1PA3long 6157 - 0 636 54062 578 12 0 58 chain 4788 chr1 249250621 + 75816716 75816793 MADE1 96 - 0 95 197484 26 0 1 17 4 22 5 1 0 24 chain 29420 chr1 249250621 + 75820033 75820368 LTR14A 344 + 0 337 86986 14 0 2 321 chain 26461 chr1 249250621 + 75829865 75830282 MSTA 426 - 0 426 98200 66 12 21 131 11 10 66 1 0 26 4 7 42 17 16 41 chain 536377 chr1 249250621 + 75841511 75853893 L1PA2 6032 + 3 6016 3396 698 3 10 247 0 3 305 6379 0 4750 chain 76245 chr1 249250621 + 75842770 75843738 LTR5_Hs 974 + 0 974 45338 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 275260 chr1 249250621 + 75843738 75847374 HERVK-int 6823 + 0 6567 14911 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 19 16 13 12 0 306 1 0 206 2 0 26 1 0 19 1 0 312 1 0 440 1 0 369 2 0 7 1 0 662 0 2807 189 9 297 58 1 0 36 1 0 124 1 0 49 3 0 4 1 0 7 1 0 7 1 0 72 2 0 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 4 chain 76245 chr1 249250621 + 75848175 75849143 LTR5_Hs 974 + 0 974 45337 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 24199 chr1 249250621 + 75854194 75854476 AluY 311 + 11 295 109219 120 0 2 162 chain 529649 chr1 249250621 + 75868075 75874547 L1PA7 6471 + 0 6464 4228 333 8 0 31 8 9 19 1 0 18 0 2 265 6 6 605 0 1 527 0 1 84 1 2 220 0 1 233 0 1 279 1 2 41 0 4 7 13 9 96 9 0 686 10 4 42 0 1 392 6 0 6 12 18 83 0 1 287 0 3 636 8 7 657 8 6 184 0 1 123 1 0 183 0 5 343 chain 10123 chr1 249250621 + 75874687 75874855 L1PA16 3655 + 3397 3578 159981 76 14 25 11 5 7 62 chain 122478 chr1 249250621 + 75881203 75882767 THE1B-int 1605 + 0 1596 30229 115 0 1 312 3 28 81 0 1 284 17 18 68 0 1 567 2 0 22 1 0 10 0 6 82 chain 3413 chr1 249250621 + 75893292 75893330 MIR 256 + 5 43 216875 38 chain 23255 chr1 249250621 + 75915415 75915695 AluSc 308 + 10 290 114416 280 chain 27427 chr1 249250621 + 75928824 75929127 AluYk11 308 + 0 304 94890 131 0 1 172 chain 552840 chr1 249250621 + 75941953 75948115 L1PA3long 6157 + 6 6157 1087 1029 2 1 131 0 3 964 0 1 409 0 1 643 0 1 506 1 0 1922 18 3 537 chain 10405 chr1 249250621 + 75952300 75952438 THE1D-int 1627 - 216 353 158665 5 1 0 6 1 0 5 0 1 120 chain 5304 chr1 249250621 + 75954040 75954110 Tigger3a 397 - 179 259 191985 60 0 10 10 chain 25918 chr1 249250621 + 75975538 75975898 THE1B 368 - 0 368 100345 67 0 1 49 10 9 28 4 13 32 1 0 169 chain 44685 chr1 249250621 + 76010556 76011101 L1PA7 6471 - 6 558 63392 38 1 10 14 2 0 490 chain 102773 chr1 249250621 + 76057256 76058803 L1MA1 4479 + 2597 4134 36060 5 3 0 41 0 1 26 2 1 100 2 0 33 1 0 58 10 5 71 0 1 18 2 1 19 10 8 167 0 9 9 11 0 41 0 1 39 17 12 13 0 1 112 3 0 8 1 25 96 2 0 197 1 0 24 2 0 16 1 0 71 32 29 4 1 0 20 0 4 42 1 2 6 1 0 14 9 5 121 6 5 27 2 0 29 chain 54050 chr1 249250621 + 76061932 76062660 L1PA13 3608 + 2173 2896 56326 75 12 7 86 10 6 132 18 19 82 0 3 313 chain 14801 chr1 249250621 + 76066890 76067063 L1PA7 6471 + 6140 6313 141934 173 chain 12714 chr1 249250621 + 76067072 76067223 L1PA7 6471 + 6314 6465 149404 151 chain 23574 chr1 249250621 + 76073242 76073596 THE1B 368 + 7 368 112717 4 1 0 127 0 4 27 1 0 17 21 28 18 13 11 125 chain 3789 chr1 249250621 + 76073953 76073999 L1MA5 2750 + 2518 2564 210528 46 chain 101028 chr1 249250621 + 76085528 76086742 L1PA7 6471 - 10 1223 36506 528 1 0 130 0 4 185 1 0 182 3 0 184 chain 109986 chr1 249250621 + 76098849 76100064 L1PA3long 6157 - 1444 2659 34219 1215 chain 40981 chr1 249250621 + 76100064 76100507 L1PA3long 6157 + 4712 5155 67691 443 chain 90291 chr1 249250621 + 76100507 76101502 L1PA3long 6157 + 5160 6157 39540 712 0 3 140 1 0 142 chain 155794 chr1 249250621 + 76110327 76112106 L1PA5 6144 - 1 1789 23880 206 0 3 57 0 10 812 4 0 45 1 0 60 0 1 594 chain 4673 chr1 249250621 + 76130269 76130327 L1P4 1494 + 561 619 198830 58 chain 36477 chr1 249250621 + 76131959 76132414 L1P3 4156 + 3651 4095 74268 92 18 7 345 chain 9982 chr1 249250621 + 76140366 76140495 L1M1 2793 + 1261 1383 160664 8 7 0 114 chain 537339 chr1 249250621 + 76143435 76149443 L1PA3long 6157 + 3 6149 3267 5 3 0 145 0 1 210 0 1 403 8 136 1480 0 1 383 0 1 814 0 5 772 0 4 1785 chain 21169 chr1 249250621 + 76151511 76151887 THE1C 375 - 0 375 123313 18 22 21 59 15 14 32 43 45 6 2 0 10 0 1 169 chain 519646 chr1 249250621 + 76163331 76169348 L1PA4 6152 + 8 6143 5195 147 1 2 423 2 1 126 7 0 63 0 128 916 0 1 258 26 21 107 0 2 1477 0 1 954 1 0 1256 2 1 251 chain 48641 chr1 249250621 + 76179788 76182434 L1PA15 4387 + 2242 4292 59995 207 5 7 46 14 16 53 1 40 116 19 3 94 0 13 23 1814 1180 58 7 6 27 2 10 44 1 0 27 29 24 34 3 0 22 chain 6661 chr1 249250621 + 76187124 76187206 MER30 238 + 154 233 179979 41 3 0 38 chain 3660 chr1 249250621 + 76187933 76188039 LTR10C 591 + 0 104 76380 32 2 0 72 chain 36441 chr1 249250621 + 76188045 76188542 LTR3B_ 500 + 0 500 74312 76 1 0 222 3 4 57 0 1 47 15 17 76 chain 13844 chr1 249250621 + 76188542 76188943 LTR10C 591 + 104 510 76380 135 1 2 129 0 6 77 42 40 17 chain 115502 chr1 249250621 + 76221511 76222928 L1P2 5180 + 3749 5178 32605 93 5 4 26 0 2 19 2 3 64 0 2 41 0 3 347 1 5 314 0 2 301 0 2 112 1 0 47 1 0 38 1 0 4 chain 52857 chr1 249250621 + 76224191 76224895 LTR12 884 + 0 884 57097 25 1 0 30 0 41 127 0 2 99 0 25 28 2 0 171 0 103 97 0 8 50 13 17 61 chain 479505 chr1 249250621 + 76243281 76249427 L1PA4 6152 + 10 6152 7744 103 14 28 16 32 28 31 3 2 18 0 1 5 7 6 233 8 7 44 0 1 426 25 0 123 14 17 75 111 102 969 0 12 140 1 4 163 1 0 125 7 6 488 2 0 19 0 1 6 1 0 414 0 3 56 0 2 42 0 1 95 5 18 47 1 2 527 0 1 816 23 0 71 0 4 224 0 2 468 1 0 6 0 1 125 0 3 15 chain 50367 chr1 249250621 + 76249465 76250111 L1PA6 6164 + 5490 6154 58739 178 0 16 33 0 1 44 0 1 240 15 15 136 chain 41167 chr1 249250621 + 76286012 76286467 L1P1 4361 - 725 1180 67684 455 chain 75924 chr1 249250621 + 76286467 76287290 L1P1 4361 + 2358 3181 45527 823 chain 290800 chr1 249250621 + 76289148 76292713 L1PA8 5853 - 1 3570 13972 28 11 1 63 1 0 18 3 2 52 1 0 9 2 1 70 2 0 46 1 0 332 0 1 220 0 2 156 0 1 289 4 19 98 0 2 37 8 1 70 2 0 157 5 6 517 1 0 11 0 1 704 0 4 449 18 22 180 chain 72945 chr1 249250621 + 76292719 76293620 L1PA8 5853 + 1387 2271 47047 22 3 2 166 0 2 447 26 7 225 0 1 12 chain 505362 chr1 249250621 + 76294516 76300609 L1PA5 6144 + 0 6135 6505 120 1 15 18 3 15 359 1 0 282 17 0 9 1 18 304 0 5 24 9 0 435 1 0 309 0 1 400 0 1 253 0 3 108 0 1 828 0 1 321 7 6 44 1 2 176 0 1 722 1 3 436 1 2 71 1 5 664 0 2 59 1 6 106 chain 84431 chr1 249250621 + 76305301 76306214 L1PA3long 6157 + 5094 6007 41744 913 chain 13596 chr1 249250621 + 76306214 76306363 L1PA3long 6157 + 6008 6157 145994 149 chain 15526 chr1 249250621 + 76307591 76308064 MER4E 760 - 3 482 54069 76 1 0 147 12 6 70 0 13 167 chain 87430 chr1 249250621 + 76308070 76309075 LTR13 1007 + 0 1007 40588 381 2 3 508 0 1 114 chain 9125 chr1 249250621 + 76309075 76309353 MER4E 760 - 482 760 54069 110 1 0 145 1 2 21 chain 5001 chr1 249250621 + 76313209 76313645 MSTB2 466 - 16 441 195125 49 0 1 8 353 341 26 chain 473584 chr1 249250621 + 76321974 76328100 L1PA7 6471 - 1 6466 7927 13 1 0 143 0 1 692 2 1 238 0 1 346 0 7 8 3 17 44 4 5 315 0 1 394 0 1 84 4 3 245 0 1 80 0 1 168 0 1 130 0 1 100 0 1 185 4 0 6 0 4 106 0 1 494 1 0 49 0 1 321 1 0 210 0 2 360 1 2 95 0 1 36 1 0 274 0 1 215 0 21 176 0 75 57 5 15 150 45 242 52 77 81 11 1 0 4 0 1 175 chain 4132 chr1 249250621 + 76373698 76373787 L1M3f 2199 - 1169 1257 205458 26 13 12 10 6 6 34 chain 13589 chr1 249250621 + 76375174 76375356 L1PA8 5853 - 3 173 146016 90 1 0 16 1 0 56 10 0 8 chain 50505 chr1 249250621 + 76385073 76385631 L1PA3long 6157 - 0 558 58648 558 chain 170543 chr1 249250621 + 76406919 76408881 L1PA5 6144 - 13 1979 21988 134 3 0 5 7 10 463 1 0 1026 1 0 5 0 6 317 chain 51234 chr1 249250621 + 76414573 76415164 LTR10C 591 + 0 591 58168 229 2 0 279 0 2 81 chain 46609 chr1 249250621 + 76418736 76419399 PABL_A 660 - 0 660 61526 207 2 1 33 4 0 116 50 7 28 0 44 97 1 0 15 0 2 110 chain 27590 chr1 249250621 + 76425042 76425331 AluYa5 310 - 0 289 94377 289 chain 87440 chr1 249250621 + 76426305 76427392 MER11B 1079 + 0 1079 40582 259 3 0 301 36 35 144 0 1 32 6 0 44 2 0 63 0 1 176 0 2 21 chain 15188 chr1 249250621 + 76429749 76429932 AluSp 311 + 84 268 140805 119 0 1 64 chain 4052 chr1 249250621 + 76443455 76443734 LTR16A 446 - 99 383 206616 4 1 0 17 212 218 45 chain 8646 chr1 249250621 + 76449239 76449379 L1PA14 3548 - 3292 3426 167501 18 2 1 16 0 1 4 2 0 67 2 0 3 2 0 24 chain 123044 chr1 249250621 + 76515616 76517131 L1PA7 6471 - 6 1546 30029 6 2 0 135 5 4 309 2 1 107 7 11 268 5 0 224 3 9 31 0 1 11 0 1 237 0 22 163 chain 41310 chr1 249250621 + 76523069 76523592 L1PA8 5853 - 0 519 67521 93 1 0 16 12 14 40 2 1 10 2 1 70 2 0 44 1 0 230 chain 41345 chr1 249250621 + 76523813 76524559 L1PB1 5432 + 4763 5422 67477 47 1 0 52 0 1 235 8 5 14 59 0 21 3 6 14 19 12 50 2 1 14 2 1 44 1 0 16 25 15 15 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 6217 chr1 249250621 + 76538703 76538822 LTR5_Hs 974 - 459 588 183438 19 5 37 8 22 0 65 chain 14777 chr1 249250621 + 76546871 76547087 MER30 238 - 0 236 142010 54 0 1 65 9 10 68 6 24 14 chain 167478 chr1 249250621 + 76577138 76579039 SVA_D 2077 - 14 2077 22338 626 0 49 342 10 12 63 0 38 21 3 1 149 3 0 34 0 3 117 0 37 5 0 3 354 1 0 148 0 37 5 1 0 19 chain 14529 chr1 249250621 + 76583670 76583891 L1PA8 5853 - 0 217 142799 85 9 8 19 2 1 45 15 13 46 chain 232305 chr1 249250621 + 76632123 76635471 L1PA13 3608 - 172 3522 17182 40 2 0 5 2 0 56 1 0 62 2 0 114 19 16 10 2 1 26 12 12 235 0 2 7 0 2 228 0 2 82 2 0 66 19 31 13 13 10 191 6 9 21 0 1 159 1 0 6 0 1 199 0 1 22 0 1 288 0 4 94 0 14 119 0 1 150 0 1 26 0 2 60 0 11 62 0 1 36 5 4 181 0 1 9 0 2 84 10 12 12 2 0 98 1 0 17 2 0 15 2 1 4 1 0 15 1 0 18 6 2 16 2 0 17 1 0 7 2 3 5 1 0 8 20 13 96 9 7 71 28 18 23 3 0 12 2 1 25 6 3 23 7 5 18 1 0 4 chain 238627 chr1 249250621 + 76637070 76640110 L1PA8A 6298 + 3314 6289 16846 21 46 8 23 1 0 25 4 1 18 1 2 284 50 12 11 9 1 158 0 1 83 4 1 165 1 2 227 0 1 64 0 1 208 0 1 445 0 1 409 1 0 546 0 19 108 25 26 103 chain 18352 chr1 249250621 + 76669576 76670010 L1MA4 2864 - 57 444 131931 41 10 8 18 104 55 10 3 0 38 18 14 88 6 18 18 3 2 77 chain 72975 chr1 249250621 + 76676809 76677622 L1PA4 6152 + 5329 6143 47037 488 0 1 325 chain 37571 chr1 249250621 + 76683237 76683896 L1PB1 5432 - 23 649 72721 5 1 0 13 5 4 17 1 0 24 2 0 14 1 0 5 3 1 18 24 12 16 1 0 43 8 7 9 2 1 50 18 12 13 1 0 7 1 0 21 6 1 9 1 4 96 4 5 198 1 0 21 chain 31606 chr1 249250621 + 76687833 76688239 L1PA15 4387 + 3410 3824 81473 89 1 10 298 2 1 16 chain 10457 chr1 249250621 + 76688239 76688356 L1PA3long 6157 + 6040 6157 158459 117 chain 397355 chr1 249250621 + 76708137 76713341 L1PA8 5853 - 1 5803 10186 92 1 0 19 2 1 50 4 3 8 1 0 45 0 1 25 2 0 46 1 0 456 0 1 27 0 1 68 3 1 116 1 2 272 0 1 119 4 8 126 0 1 664 0 5 323 6 16 140 0 1 200 0 1 80 0 3 17 1 0 6 0 1 24 1 0 69 1 0 4 0 1 258 6 25 40 0 4 178 0 3 5 3 0 277 2 0 345 0 607 219 6 9 202 0 3 26 0 1 280 55 43 21 20 14 140 50 14 12 1 0 7 8 6 19 chain 44606 chr1 249250621 + 76768455 76769155 MER51A 677 - 0 677 63475 62 1 0 75 16 14 61 18 7 79 0 6 26 7 21 119 26 15 14 18 1 76 7 6 95 chain 66019 chr1 249250621 + 76776961 76777749 L1PA7 6471 - 1 783 50085 11 6 0 771 chain 49594 chr1 249250621 + 76777754 76778357 L1PA7 6471 + 5100 5693 59324 207 0 5 309 15 0 72 chain 6360 chr1 249250621 + 76790623 76790698 L1PA3long 6157 - 3 78 182317 75 chain 80467 chr1 249250621 + 76807407 76808349 L1PA7 6471 - 12 959 43400 684 0 1 44 1 0 20 1 0 80 0 6 112 chain 3299 chr1 249250621 + 76862308 76862352 LTR54B 464 + 409 452 218994 22 1 0 21 chain 12101 chr1 249250621 + 76892052 76892229 Tigger3b 1229 - 709 886 151793 143 0 13 8 14 1 12 chain 114642 chr1 249250621 + 76912621 76914191 THE1B-int 1605 + 0 1605 32906 253 6 1 169 32 58 22 12 9 34 0 2 53 0 1 103 20 17 40 0 1 196 0 11 231 2 3 49 3 0 61 0 5 46 0 2 238 chain 303805 chr1 249250621 + 76915656 76920463 L1PB1 5432 - 350 4460 13253 189 0 2 131 9 1 37 8 15 78 1 2 14 1 5 90 21 32 39 1 2 10 0 1 23 0 2 107 5 7 90 0 2 69 0 1 134 3 2 72 1 2 66 368 0 120 11 13 324 10 11 4 1 0 53 360 0 324 2 1 165 5 4 318 0 1 1096 30 34 121 1 2 241 1 0 53 chain 210521 chr1 249250621 + 76922236 76924578 L1PA3long 6157 + 3843 6156 18468 915 31 1 1255 0 1 141 chain 34105 chr1 249250621 + 76941388 76941803 L1PA7 6471 - 2 418 77473 153 0 1 262 chain 469426 chr1 249250621 + 76948421 76953723 L1PA5 6144 - 9 5315 8055 324 0 1 535 0 4 1185 1 2 914 1 0 864 1 0 1199 1 0 105 0 1 172 chain 18531 chr1 249250621 + 77001997 77002321 THE1C 375 - 43 375 131426 101 4 7 37 7 16 78 48 46 34 2 0 13 chain 298158 chr1 249250621 + 77002352 77006151 L1PA8A 6298 + 2501 6291 13524 90 0 5 123 1 0 333 0 14 225 0 6 74 0 1 46 11 15 34 55 1 237 7 6 160 0 1 605 0 2 45 0 1 203 8 9 231 0 1 179 19 19 305 0 4 13 0 4 76 1 3 675 1 2 42 chain 3132 chr1 249250621 + 77047312 77047389 MADE2 80 + 0 78 222331 28 25 26 24 chain 33847 chr1 249250621 + 77060736 77061177 LTR22A 463 - 9 463 77856 82 1 15 307 7 6 44 chain 18054 chr1 249250621 + 77064979 77065248 L1PA8 5853 - 0 268 132716 84 12 11 17 2 1 50 1 0 11 2 1 16 0 5 49 2 0 23 chain 26276 chr1 249250621 + 77080130 77080432 AluY 311 + 8 311 98915 118 0 1 184 chain 26623 chr1 249250621 + 77100373 77100655 AluYa5 310 - 0 284 97584 276 0 2 6 chain 74064 chr1 249250621 + 77130373 77131208 L1PA4 6152 + 5313 6152 46478 464 1 0 364 0 5 6 chain 295 chr1 249250621 + 77164551 77164637 L1MA8 2339 + 1954 2039 171017 55 1 0 30 chain 28848 chr1 249250621 + 77164694 77164997 AluYb8 318 + 0 303 89678 303 chain 24253 chr1 249250621 + 77165101 77165387 AluSp 311 + 10 295 108922 122 1 0 163 chain 659 chr1 249250621 + 77166691 77166883 L1MA8 2339 + 2173 2333 171017 23 2 0 9 9 0 21 13 11 17 65 46 33 chain 3814 chr1 249250621 + 77176816 77176892 MIR 256 - 91 167 210173 17 3 0 7 11 14 38 chain 6470 chr1 249250621 + 77193799 77193914 MER5A 189 + 24 142 181474 51 28 29 25 0 2 11 chain 505866 chr1 249250621 + 77200439 77207787 L1PA7 6471 - 2 6471 6475 10 2 0 149 1 2 350 63 0 240 7 4 92 0 200 24 0 1 377 0 2 69 3 0 82 1 4 191 0 4 36 0 1 23 0 2 1109 14 13 497 0 1 161 0 1 99 1 2 24 28 0 65 2 5 4 1 0 157 1013 3 66 0 1 77 0 1 45 1 2 467 1 0 301 0 1 394 1 0 263 1 15 588 12 8 236 chain 90160 chr1 249250621 + 77204321 77205334 L1P1 4361 + 2540 3554 39469 706 6 7 301 chain 3701 chr1 249250621 + 77224688 77224733 MIR 256 + 97 144 211919 5 0 2 40 chain 6560 chr1 249250621 + 77239264 77239364 MER3 215 - 15 120 180781 41 5 11 6 1 0 47 chain 87825 chr1 249250621 + 77261821 77262792 L1PA3long 6157 + 5180 6157 40439 223 0 6 407 0 1 81 1 0 259 chain 71125 chr1 249250621 + 77303437 77304242 L1PA5 6144 - 1174 1982 47841 520 0 3 285 chain 100253 chr1 249250621 + 77304242 77305400 L1PA5 6144 + 4973 6134 36707 324 0 4 47 6 6 342 3 1 331 0 1 105 chain 5943 chr1 249250621 + 77305589 77305693 LTR40b 463 + 338 444 185758 6 0 1 62 21 22 15 chain 452342 chr1 249250621 + 77340510 77346085 HERVL-int 5654 - 0 5643 8682 223 0 1 50 0 2 60 16 22 28 0 2 41 1 0 119 12 10 416 13 1 207 0 2 6 2 0 411 5 19 30 5 6 290 3 4 39 4 3 38 0 1 40 5 6 267 0 16 22 0 3 52 3 4 1269 0 1 69 0 1 5 1 0 442 0 1 307 1 0 29 0 11 244 0 1 46 0 1 65 0 1 122 0 1 6 0 1 42 0 5 86 0 1 149 0 4 58 0 2 166 1 7 59 chain 282850 chr1 249250621 + 77362166 77365659 HERVH-int 3825 - 0 3825 14481 112 0 11 98 7 12 29 0 1 195 37 247 39 26 29 377 0 1 894 0 1 309 1 0 13 1 3 13 0 1 10 9 0 650 0 1 13 0 2 7 0 1 54 1 0 46 1 38 14 35 93 7 0 8 163 1 0 41 0 1 133 0 1 157 chain 29062 chr1 249250621 + 77365673 77366072 LTR7 482 - 12 482 88707 174 6 7 25 8 40 109 8 46 69 chain 234007 chr1 249250621 + 77376797 77379400 L1PA3long 6157 - 2170 4799 17089 673 0 19 729 0 1 260 0 1 9 0 3 32 0 2 900 chain 192550 chr1 249250621 + 77379401 77381537 L1PA3long 6157 + 4018 6156 19811 339 0 4 196 1 0 833 1 0 766 chain 17815 chr1 249250621 + 77417058 77417311 L1PA7 6471 + 6209 6460 133350 98 27 16 101 0 9 27 chain 3047 chr1 249250621 + 77424391 77424423 U1 164 - 132 164 224045 32 chain 94890 chr1 249250621 + 77425818 77426893 MER11C 1089 - 10 1086 38126 303 0 1 207 2 1 204 0 1 359 chain 375827 chr1 249250621 + 77430294 77434730 L1PA6 6164 - 2 4469 10892 6 4 0 138 3 4 440 20 16 170 4 5 67 0 4 413 0 1 243 0 5 281 0 4 185 0 1 224 0 1 597 0 11 40 0 1 32 1 0 5 4 7 71 0 1 150 0 2 709 0 3 386 0 1 243 chain 135770 chr1 249250621 + 77434735 77436435 L1PA6 6164 + 0 1691 26884 116 0 1 112 11 3 274 0 1 385 3 12 58 10 0 124 1 0 360 1 0 245 chain 514442 chr1 249250621 + 77446706 77452859 L1PA6 6164 + 0 6161 5731 161 0 1 75 0 2 279 0 2 47 1 0 77 0 1 895 13 14 173 3 4 145 0 1 452 1 0 268 1 4 514 0 1 4 1 0 69 0 1 95 3 0 668 5 6 309 0 1 54 0 1 29 0 3 255 0 1 31 0 2 23 0 1 463 7 0 211 0 1 169 0 2 317 5 0 144 2 1 184 chain 554201 chr1 249250621 + 77465171 77471200 L1PA2 6032 - 0 6031 927 11 3 0 2149 0 3 2754 0 1 374 1 0 375 0 1 153 0 1 209 chain 3900 chr1 249250621 + 77537188 77537233 MER57F 435 - 384 429 208852 45 chain 21819 chr1 249250621 + 77542842 77543196 THE1C 375 - 21 375 120949 4 1 0 36 1 0 45 3 12 20 38 33 27 0 1 51 3 0 125 chain 25729 chr1 249250621 + 77554104 77554399 AluYf4 310 - 8 300 101175 38 2 0 59 1 0 195 chain 15846 chr1 249250621 + 77562653 77562821 L1PA2 6032 + 5572 5740 138808 168 chain 190643 chr1 249250621 + 77572546 77574687 L1PA5 6144 - 2774 4914 19986 1694 2 1 445 chain 246269 chr1 249250621 + 77574687 77577453 L1PA5 6144 + 3374 6144 16430 602 1 0 282 0 1 335 0 1 702 0 4 730 1 0 113 chain 11360 chr1 249250621 + 77584488 77584622 MLT2A2 560 + 0 134 154861 134 chain 2820 chr1 249250621 + 77595424 77595454 MER58D 378 + 337 367 228472 30 chain 115132 chr1 249250621 + 77624079 77625658 THE1B-int 1605 + 0 1597 32743 164 10 34 41 2 3 182 1 0 4 38 22 112 0 1 107 6 8 25 0 1 252 2 3 277 6 8 55 3 0 19 3 8 176 0 1 94 chain 22287 chr1 249250621 + 77637794 77638150 MER57A1 433 + 0 359 118964 17 0 1 225 20 0 17 2 23 11 28 29 36 chain 164806 chr1 249250621 + 77642091 77645003 MER57-int 2662 + 102 2659 22676 5 0 1 46 0 1 33 0 5 17 0 7 47 0 2 45 2 0 55 0 1 36 1 193 30 4 0 27 2 1 122 3 5 32 0 2 113 15 0 15 1 0 90 1 2 78 519 4 208 0 15 17 18 0 41 2 1 62 1 3 426 0 1 16 4 1 220 6 5 200 2 0 6 1 4 4 1 0 54 36 38 48 0 1 13 22 10 6 2 0 26 2 0 6 1 0 9 4 1 24 1 0 6 16 11 25 3 0 34 chain 39811 chr1 249250621 + 77642911 77643422 MER9a3 513 + 0 513 69616 18 0 2 6 0 1 58 5 4 169 0 17 8 18 0 63 1 2 165 chain 34272 chr1 249250621 + 77646162 77646627 MER4A1 472 - 0 472 77247 136 1 0 61 9 5 22 14 27 184 1 0 37 chain 450716 chr1 249250621 + 77648310 77654996 HERVL-int 5654 + 0 5647 8749 334 0 2 35 0 6 213 7 8 270 0 7 63 5 10 158 15 19 61 0 2 476 0 1 206 1 0 412 0 1 404 0 1 1021 1 3 233 0 4 13 0 1 471 1 2 200 0 21 551 1088 3 286 10 8 69 15 2 38 0 3 29 chain 28444 chr1 249250621 + 77655003 77655399 MLT2A1 477 + 0 405 91405 9 0 3 156 5 2 25 11 12 77 0 2 83 1 5 9 0 2 20 chain 74535 chr1 249250621 + 77669337 77670426 MER11B 1079 + 6 1079 46243 348 27 30 25 19 5 10 38 37 76 0 1 4 6 5 65 0 1 61 0 1 66 10 0 25 1 3 51 5 6 41 0 1 16 4 5 162 1 0 28 chain 11861 chr1 249250621 + 77686876 77687490 THE1B 368 - 74 368 152785 44 13 12 8 1 0 16 8 15 30 1 0 13 399 75 81 chain 99557 chr1 249250621 + 77687490 77688984 THE1B-int 1605 - 0 1543 36894 8 0 1 172 1 0 431 12 4 97 0 1 36 75 174 200 0 4 18 0 64 279 0 3 11 57 0 31 57 0 9 chain 10332 chr1 249250621 + 77721718 77721835 L1MA3 4352 + 3761 3878 158970 117 chain 8891 chr1 249250621 + 77721962 77722069 MER30 238 + 129 236 166176 107 chain 26538 chr1 249250621 + 77736041 77736342 AluYk4 311 - 8 310 97897 65 0 1 236 chain 159519 chr1 249250621 + 77770896 77773401 L1MA1 4479 - 343 3024 23396 29 2 0 19 10 3 7 1 0 79 1 0 4 0 1 42 3 0 5 1 0 85 1 0 17 2 0 19 1 0 44 8 1 42 2 0 25 1 0 192 5 2 68 0 1 54 0 3 6 6 0 9 0 3 46 0 8 40 0 234 63 5 2 5 0 1 97 27 26 29 0 1 20 1 0 5 30 28 103 3 2 8 19 0 63 7 5 165 1 0 75 22 33 73 0 1 76 7 6 11 14 0 45 10 12 4 1 0 43 0 3 20 4 2 21 11 12 188 37 28 93 0 2 138 1 0 84 chain 40765 chr1 249250621 + 77801690 77802609 L1M1 2793 - 561 1188 68218 10 1 0 62 301 0 8 0 1 17 0 5 20 1 4 48 13 12 27 19 31 96 9 1 216 5 3 66 chain 2757 chr1 249250621 + 77802753 77802803 L1MC2 1988 + 1952 1988 229349 29 14 0 7 chain 10891 chr1 249250621 + 77813989 77814112 L1PA4 6152 - 202 343 156619 36 0 18 87 chain 9494 chr1 249250621 + 77832850 77833006 Tigger4b 360 - 2 144 163108 51 25 11 80 chain 167081 chr1 249250621 + 77867996 77869818 L1PA4 6152 - 15 1836 22387 1642 1 0 179 chain 58731 chr1 249250621 + 77873531 77874339 L1PA16 3655 - 118 927 53567 247 2 0 36 0 1 42 12 7 67 14 16 56 0 1 82 0 2 38 0 4 16 1 0 19 1 0 175 chain 21667 chr1 249250621 + 77875344 77875710 L1PA14 3548 - 63 411 121514 20 1 0 10 6 0 39 2 1 17 1 0 11 13 10 36 14 9 111 1 0 84 chain 4957 chr1 249250621 + 77886010 77886069 U7 62 + 1 60 195602 59 chain 24814 chr1 249250621 + 77888626 77888926 AluY 311 + 8 303 105808 119 5 0 176 chain 74600 chr1 249250621 + 77894294 77895151 L1PA4 6152 - 0 868 46209 6 0 5 328 0 1 34 0 3 89 4 2 382 0 4 14 chain 59387 chr1 249250621 + 77914606 77915333 THE1B-int 1605 + 869 1596 53186 87 1 2 212 2 0 8 0 1 417 chain 48422 chr1 249250621 + 77915454 77916050 THE1A-int 1579 - 977 1579 60164 162 0 2 155 0 2 9 1 3 269 chain 2994 chr1 249250621 + 77925168 77925347 MER5A 189 - 0 187 225128 19 131 139 29 chain 2788 chr1 249250621 + 77948508 77948540 MER58B 340 + 292 324 228907 32 chain 31559 chr1 249250621 + 77954183 77954610 MLT2A1 477 - 0 477 81546 39 5 1 13 0 40 110 0 7 93 1 5 28 0 1 116 1 3 21 chain 58311 chr1 249250621 + 77962352 77963202 LTR12 884 + 0 876 53802 143 0 41 24 0 42 21 0 42 27 11 12 25 2 0 154 3 0 38 94 0 140 1 0 167 chain 7134 chr1 249250621 + 77962809 77962894 LTR12 884 + 587 672 148530 85 chain 26239 chr1 249250621 + 77978286 77978571 L1PA4 6152 + 5578 5863 99052 285 chain 35551 chr1 249250621 + 77985147 77985605 MER41A 554 - 0 466 75476 73 6 12 155 1 2 217 0 1 6 chain 4659 chr1 249250621 + 77989235 77989306 L1MB3 1562 - 10 80 198962 26 6 5 39 chain 2579 chr1 249250621 + 77996383 77996426 MIR 256 - 105 149 231926 21 3 4 19 chain 85610 chr1 249250621 + 77996701 77997973 LTR12C 1709 - 0 1709 41303 84 5 4 106 0 106 129 0 21 31 20 13 57 0 2 38 3 1 5 0 159 86 0 118 138 7 8 48 0 9 53 25 26 6 5 0 15 2 0 65 0 43 38 82 76 224 chain 29867 chr1 249250621 + 78091886 78092329 MER1A 529 - 0 529 85224 55 29 31 47 3 0 5 3 0 237 6 75 43 0 21 15 chain 17730 chr1 249250621 + 78124657 78124857 AluSp 311 + 36 236 133621 200 chain 3051 chr1 249250621 + 78136516 78136562 MER65A 464 + 124 192 223988 30 1 23 15 chain 39804 chr1 249250621 + 78157103 78157622 L1PB2 3958 + 3270 3775 69623 38 2 0 55 1 0 8 3 0 68 2 0 12 4 0 94 1 0 72 1 0 64 1 0 49 0 3 20 2 0 22 chain 3653 chr1 249250621 + 78200839 78200905 MADE2 80 + 0 80 212736 20 11 25 35 chain 63724 chr1 249250621 + 78210544 78211287 L1P1 4361 - 1650 2399 51132 25 0 3 138 0 1 229 0 2 351 chain 113681 chr1 249250621 + 78211292 78212582 L1P1 4361 + 2707 4000 33179 780 0 4 185 1 0 324 chain 13202 chr1 249250621 + 78233242 78233745 MER30B 195 + 10 195 147458 65 323 5 115 chain 6725 chr1 249250621 + 78245582 78245663 5S 121 + 0 81 179504 81 chain 125016 chr1 249250621 + 78250727 78252606 THE1B-int 1605 - 7 1605 29388 289 311 0 351 0 1 422 0 3 75 0 25 227 1 2 203 chain 14079 chr1 249250621 + 78269358 78269675 L1MA3 4352 + 3997 4277 144292 93 69 44 36 7 8 11 1 2 4 1 0 40 4 0 10 8 1 12 2 0 19 chain 20170 chr1 249250621 + 78306224 78306478 AluSp 311 + 15 263 126616 25 7 1 222 chain 245461 chr1 249250621 + 78319597 78322946 L1PB1 5432 - 8 3341 16485 4 1 0 16 1 0 9 0 3 22 1 0 24 2 0 14 8 5 19 14 5 7 3 0 16 1 0 43 1 0 16 2 1 50 3 1 11 16 11 31 15 13 48 34 21 262 14 13 30 0 1 20 1 0 76 1 3 8 1 4 102 35 34 22 0 2 287 0 1 136 1 4 308 2 0 107 0 2 5 0 1 634 6 19 14 1 7 90 1 0 8 4 3 331 1 0 409 chain 174718 chr1 249250621 + 78334625 78336760 SVA_E 1901 - 7 1901 21509 72 9 0 600 0 1 93 40 0 33 1 0 133 1 0 39 53 0 106 132 0 493 3 0 179 3 0 145 chain 4680 chr1 249250621 + 78335646 78335699 SVA_E 1901 - 627 680 92088 53 chain 11567 chr1 249250621 + 78335805 78335936 SVA_E 1901 - 786 912 92088 20 1 0 80 4 0 26 chain 257817 chr1 249250621 + 78362462 78365347 L1PA4 6152 + 3255 6151 15819 297 0 1 1751 0 4 682 15 8 8 0 7 104 0 6 28 chain 9658 chr1 249250621 + 78377293 78377416 Tigger4b 360 + 140 264 162313 14 0 2 5 1 0 103 chain 25590 chr1 249250621 + 78384647 78385008 THE1A 353 - 0 353 101780 228 24 18 13 1 0 46 0 1 34 2 0 13 chain 8692 chr1 249250621 + 78385163 78385267 THE1A-int 1579 - 201 305 167243 104 chain 25227 chr1 249250621 + 78398568 78398875 AluSp 311 + 0 309 103604 10 0 1 55 0 3 231 2 0 9 chain 73058 chr1 249250621 + 78448579 78449521 LTR5_Hs 974 - 0 974 47000 92 9 29 19 8 15 100 0 4 55 9 8 184 0 1 177 0 1 289 chain 34333 chr1 249250621 + 78486672 78487053 L1PA5 6144 - 4 391 77160 260 0 6 121 chain 7896 chr1 249250621 + 78487110 78487259 AluJb 308 - 77 223 171675 34 2 1 21 38 36 54 chain 8908 chr1 249250621 + 78495658 78495760 LTR12_ 688 + 259 361 166096 102 chain 3719 chr1 249250621 + 78519059 78519204 MER90a 614 + 432 603 211656 37 88 114 20 chain 171351 chr1 249250621 + 78550314 78552712 L1PREC2 3366 - 827 3211 21900 97 13 16 23 4 0 341 0 7 35 0 1 291 0 1 41 1 11 66 18 11 38 0 7 87 0 1 150 18 16 168 2 0 22 2 1 11 1 0 172 1 0 4 8 15 92 9 4 320 1 0 21 1 0 45 11 1 18 1 0 33 2 0 19 4 5 59 1 0 31 1 0 4 1 0 9 2 1 9 1 0 26 1 0 5 12 7 16 3 1 10 1 0 15 chain 44012 chr1 249250621 + 78552752 78553517 L1PA14 3548 + 2751 3465 64190 187 37 27 36 2 0 4 2 0 35 0 1 69 2 0 4 2 0 17 2 0 6 1 0 21 0 2 33 24 1 27 1 0 9 0 1 18 5 10 68 19 14 30 0 1 5 8 6 9 1 0 6 1 0 19 1 0 38 6 0 10 chain 6174 chr1 249250621 + 78560506 78560578 5S 121 - 18 90 183775 72 chain 35419 chr1 249250621 + 78575458 78575865 L1PA4 6152 + 5728 6137 75657 275 0 1 34 0 1 98 chain 64072 chr1 249250621 + 78582037 78582758 L1PA5 6144 - 2 720 50980 7 6 0 653 0 3 55 chain 22094 chr1 249250621 + 78586208 78586576 THE1B 368 - 0 368 119820 56 7 6 63 65 70 4 1 0 45 3 0 124 chain 22861 chr1 249250621 + 78588054 78588416 THE1D 372 - 0 372 116282 33 0 1 65 0 1 48 17 18 11 0 4 6 23 25 58 4 5 97 chain 35720 chr1 249250621 + 78613407 78613853 L1PB1 5432 - 1339 1777 75031 22 0 1 196 1 0 98 2 0 48 4 0 14 2 0 59 chain 95450 chr1 249250621 + 78613853 78615201 L1PB1 5432 + 4092 5420 37971 117 1 0 92 0 7 301 8 13 186 1 0 4 4 3 195 2 0 5 0 2 29 0 1 5 1 0 51 1 2 9 3 0 24 1 0 8 1 0 12 4 0 9 2 0 53 2 1 10 7 6 44 1 0 15 4 0 7 14 6 18 8 5 14 2 0 22 3 2 21 1 4 7 1 0 18 chain 451995 chr1 249250621 + 78624390 78629780 L1PA6 6164 + 0 6162 8696 217 1 0 33 1 0 269 0 2 7 1 0 39 1 0 36 0 2 70 0 2 110 0 17 99 0 4 412 1 2 200 0 13 208 0 4 574 14 7 38 1 0 34 0 4 365 0 1 42 0 718 947 0 11 10 0 2 159 0 1 285 1 0 316 0 1 57 1 5 692 0 1 133 3 0 13 chain 386746 chr1 249250621 + 78651649 78655909 L1PA3long 6157 - 2 4267 10557 2892 0 2 90 3 1 1265 0 5 10 chain 81783 chr1 249250621 + 78656744 78658273 L1PA11 4918 - 414 1531 42854 15 1 0 15 2 0 77 1 0 72 1 0 89 312 0 79 13 28 41 0 2 105 1 2 35 13 16 26 122 6 509 chain 6255 chr1 249250621 + 78664593 78664671 LTR6B 557 + 0 77 183132 50 1 0 27 chain 44146 chr1 249250621 + 78665751 78666312 LTR6B 557 + 0 557 64017 50 1 0 309 0 1 35 6 0 84 21 23 55 chain 519838 chr1 249250621 + 78668792 78675255 L1PA7 6471 + 1 6465 5179 223 38 39 11 0 1 117 1 0 81 1 0 436 7 12 69 1 0 234 0 3 41 3 4 67 6 11 29 3 4 669 7 11 578 39 5 830 18 17 84 0 2 289 0 1 367 2 1 429 0 8 70 5 6 40 2 0 18 5 9 266 0 1 334 6 7 196 1 0 66 11 13 142 2 3 291 1 2 327 chain 37611 chr1 249250621 + 78680785 78681266 LTR10F 562 + 0 562 72669 121 1 2 11 1 85 11 4 1 211 1 0 120 chain 205188 chr1 249250621 + 78681266 78683939 L1PBa1 4058 + 1387 4040 18842 53 10 8 8 0 2 187 3 7 6 0 4 628 0 1 130 8 6 39 1 0 136 0 4 149 0 1 34 13 7 97 0 1 540 1 0 115 10 15 30 2 1 69 1 0 7 1 0 29 1 0 41 2 0 108 3 1 22 1 0 7 6 0 15 2 0 19 2 1 4 1 0 3 3 0 22 1 0 9 2 1 9 2 0 5 1 0 6 11 9 15 1 0 42 chain 3002 chr1 249250621 + 78688252 78688284 U3 216 - 184 216 224982 32 chain 46756 chr1 249250621 + 78704570 78705191 L1PA8 5853 + 5240 5853 61407 324 1 0 45 2 0 69 12 10 52 3 1 19 1 0 93 chain 13891 chr1 249250621 + 78705524 78705692 L1PA16 3655 + 3335 3504 144953 12 1 0 134 0 2 21 chain 212760 chr1 249250621 + 78709230 78711497 L1HS 6032 - 0 2267 18308 2267 chain 25535 chr1 249250621 + 78711497 78711767 L1HS 6032 + 3517 3787 101195 270 chain 15068 chr1 249250621 + 78720033 78720254 L1PA8 5853 - 0 227 141117 61 0 1 18 6 13 19 2 1 61 7 6 47 chain 293937 chr1 249250621 + 78723597 78727487 L1PA10 4194 + 241 4137 13768 9 1 0 21 2 0 15 1 0 8 46 20 21 2 0 21 9 7 11 1 0 6 1 0 14 5 0 9 1 0 82 7 5 61 0 1 188 0 9 538 0 5 320 0 1 606 0 7 12 0 10 119 0 3 264 13 20 20 1 5 59 0 1 130 1 2 183 0 3 5 15 12 177 21 22 339 0 1 140 0 1 352 12 10 21 chain 24103 chr1 249250621 + 78730041 78730530 L1PA13 3608 + 138 596 109735 26 2 1 12 3 0 24 66 56 31 1 0 3 1 0 127 1 0 9 5 4 14 2 0 16 12 8 13 1 0 18 3 1 10 1 0 5 6 2 5 0 2 7 1 0 64 chain 143668 chr1 249250621 + 78730547 78732232 L1PA5 6144 - 0 1683 25536 11 3 1 134 1 0 1329 11 12 196 chain 116037 chr1 249250621 + 78747875 78749136 L1PA2 6032 - 0 1261 32442 1261 chain 127606 chr1 249250621 + 78759404 78760998 THE1A-int 1579 + 0 1579 28673 145 0 1 156 0 1 438 0 1 350 24 6 276 1 0 137 1 2 66 chain 24108 chr1 249250621 + 78760998 78761326 THE1A 353 + 0 333 109702 17 6 12 81 1 0 94 4 7 5 3 0 117 chain 23953 chr1 249250621 + 78766016 78766320 AluY 311 + 10 307 110598 113 1 0 9 0 1 27 0 1 17 3 0 115 5 0 14 chain 508757 chr1 249250621 + 78775744 78781839 L1PA6 6164 + 0 6162 6260 141 0 12 41 1 2 192 24 24 88 11 10 428 1 26 290 0 1 319 2 1 298 0 1 138 0 5 202 1 0 114 0 1 31 6 5 820 1 2 108 0 1 229 1 0 108 7 8 201 5 5 45 0 18 990 0 1 84 22 5 1037 1 22 108 chain 3828 chr1 249250621 + 78795561 78795606 MER4E1 777 + 716 761 209965 45 chain 106361 chr1 249250621 + 78801709 78802979 L1PA7 6471 + 5181 6457 35160 298 0 1 122 9 12 73 11 13 757 chain 97499 chr1 249250621 + 78808696 78809866 L1PA5 6144 - 0 1171 37381 142 0 6 6 2 0 4 4 0 175 0 1 22 0 1 399 0 1 10 3 1 403 chain 98125 chr1 249250621 + 78809866 78810988 L1P1 4361 + 3177 4298 37243 973 1 0 148 chain 6502 chr1 249250621 + 78828120 78828209 MLT1C 463 + 63 146 181222 61 6 0 22 chain 4836 chr1 249250621 + 78840881 78840952 5S 121 - 39 120 196949 44 5 15 22 chain 12370 chr1 249250621 + 78843994 78844202 L1PA8 5853 + 5647 5853 150751 31 27 27 34 3 2 16 5 4 92 chain 10449 chr1 249250621 + 78854543 78854659 L1PA3long 6157 + 6041 6157 158498 116 chain 34200 chr1 249250621 + 78854664 78855046 L1PA5 6144 + 5761 6142 77352 52 1 0 329 chain 61819 chr1 249250621 + 78855845 78858650 L1PREC2 3366 - 302 3230 51985 54 10 8 31 44 27 22 2 0 10 12 7 17 29 21 14 7 3 40 12 11 47 8 5 212 5 9 42 1 2 81 1608 1782 151 1 0 27 7 5 27 6 4 147 1 0 4 10 7 15 1 0 17 0 11 7 24 7 7 0 3 10 1 0 34 chain 412058 chr1 249250621 + 78859270 78864368 L1PA7 6471 - 12 6465 9745 69 0 1 73 9 9 298 1 5 41 4 1330 809 0 1 232 8 13 75 1 0 403 0 4 455 2 0 78 0 26 9 26 0 677 1 4 352 0 1 94 0 3 5 3 0 145 0 15 823 2 0 403 chain 17022 chr1 249250621 + 78922493 78922678 L1PA4 6152 - 5 190 135531 185 chain 15649 chr1 249250621 + 78941217 78941409 L1PA7 6471 + 6266 6458 139437 192 chain 66292 chr1 249250621 + 78944501 78945247 L1PA4 6152 - 1404 2150 49918 746 chain 123408 chr1 249250621 + 78945247 78946636 L1PA4 6152 + 4744 6146 29913 296 0 12 267 7 8 819 chain 440887 chr1 249250621 + 78949343 78955437 L1PA8A 6298 + 28 6229 9029 6 6 0 6 1 0 16 1 0 11 25 14 22 3 0 16 21 12 16 13 11 11 2 1 7 1 0 12 2 0 13 8 6 12 46 37 9 2 0 26 17 16 23 8 0 77 2 0 14 1 0 10 1 0 3 1 0 171 0 1 83 7 9 109 4 0 294 37 44 120 0 3 93 3 0 115 0 4 736 0 1 98 0 1 183 2 3 69 0 2 125 0 2 44 1 53 461 1 0 94 0 2 5 1 2 28 0 1 7 2 4 73 0 1 198 42 12 12 1 0 173 0 1 503 0 1 132 14 14 42 3 26 561 1 0 140 38 14 107 124 251 485 2 0 5 0 2 74 chain 6187 chr1 249250621 + 78954747 78954827 L1PA7 6471 + 6348 6461 179489 23 0 13 26 0 20 31 chain 8191 chr1 249250621 + 78983706 78983811 L1PA8 5853 + 5749 5853 169998 11 4 3 90 chain 16702 chr1 249250621 + 78988248 78988448 MER107 203 - 0 203 136401 24 0 3 176 chain 16145 chr1 249250621 + 78995422 78995732 MER1B 344 + 0 344 137914 23 72 90 61 1 4 85 11 24 57 chain 16523 chr1 249250621 + 79007227 79007584 THE1B 368 - 0 368 136850 47 26 34 113 3 2 19 97 101 52 chain 26069 chr1 249250621 + 79008398 79008750 THE1B 368 + 0 368 99756 44 0 15 110 11 10 18 1 3 168 chain 29787 chr1 249250621 + 79009576 79009951 LTR3B_ 500 - 107 500 85523 35 0 1 13 0 12 26 0 5 301 chain 219451 chr1 249250621 + 79028574 79031028 L1PA4 6152 + 3686 6151 17921 5 3 0 249 0 1 410 0 4 997 0 5 128 0 1 48 0 1 413 0 2 201 chain 7946 chr1 249250621 + 79033654 79034008 MLT1C 463 + 54 439 171351 25 233 264 30 1 0 37 0 1 28 chain 109451 chr1 249250621 + 79045058 79046286 L1PA5 6144 - 4 1233 34329 612 0 1 616 chain 5509 chr1 249250621 + 79048340 79048418 MADE1 96 - 2 96 189955 45 1 17 32 chain 3773 chr1 249250621 + 79060506 79060567 MER51A 677 + 181 232 210771 18 10 0 33 chain 4522 chr1 249250621 + 79065167 79065250 MADE1 96 - 1 95 200533 24 5 0 21 5 21 28 chain 487406 chr1 249250621 + 79073385 79079409 L1PA6 6164 + 2 6161 7461 193 0 1 4 1 0 60 3 4 131 19 18 25 14 11 30 5 13 77 1 0 225 1 18 94 0 4 158 1 0 4 0 1 171 0 110 176 4 3 530 8 3 263 1 0 101 0 1 167 0 1 177 0 1 412 2 3 1172 0 8 68 0 2 201 3 0 30 9 4 127 13 12 221 15 16 65 0 1 154 1 0 39 1 0 430 2 0 366 1 5 48 chain 28556 chr1 249250621 + 79146486 79146840 L1PA6 6164 + 5807 6160 90934 346 1 0 7 chain 5686 chr1 249250621 + 79152746 79152826 MADE1 96 - 0 96 188238 45 2 18 33 chain 49924 chr1 249250621 + 79164052 79164636 L1PA5 6144 - 9 593 59073 141 13 13 430 chain 35287 chr1 249250621 + 79164639 79165063 L1P1 4361 - 3933 4357 75808 424 chain 3457 chr1 249250621 + 79197106 79197146 MIRb 242 - 110 150 216032 40 chain 26176 chr1 249250621 + 79203987 79204354 THE1B 368 + 3 368 99294 105 12 13 48 7 8 15 4 0 176 chain 118901 chr1 249250621 + 79204355 79206246 THE1B-int 1605 + 1 1605 31454 14 0 2 282 0 6 4 5 0 53 311 0 68 1 26 640 35 31 51 7 0 6 0 7 414 chain 8315 chr1 249250621 + 79213172 79213271 MSTA 426 - 9 108 169303 99 chain 20380 chr1 249250621 + 79219181 79219538 THE1B 368 + 2 368 125962 39 0 1 21 17 19 87 1 0 6 0 1 9 1 0 4 6 11 13 40 42 113 chain 3422 chr1 249250621 + 79235103 79235174 LTR37A 408 + 262 331 216733 39 18 16 14 chain 14230 chr1 249250621 + 79237051 79237282 L1PB1 5432 - 151 372 143369 42 3 2 16 2 1 52 2 0 10 15 11 33 1 0 12 1 0 42 chain 16784 chr1 249250621 + 79237282 79237486 L1PB1 5432 + 4843 5047 136148 204 chain 7701 chr1 249250621 + 79251277 79251365 L1PA4 6152 + 6064 6152 172929 88 chain 4308 chr1 249250621 + 79267464 79267511 L1P1 4361 + 2307 2354 203113 47 chain 63764 chr1 249250621 + 79274772 79275523 L1P1 4361 - 133 865 51114 78 1 0 239 23 4 293 0 1 117 chain 113309 chr1 249250621 + 79275523 79276834 L1PA4 6152 + 4843 6152 33279 461 9 0 658 1 0 4 0 1 34 1 2 110 0 1 27 0 5 6 chain 9392 chr1 249250621 + 79296549 79296657 L1PA5 6144 - 17 125 163599 108 chain 30344 chr1 249250621 + 79304119 79304437 AluYb9 318 - 0 318 83801 318 chain 2703 chr1 249250621 + 79311027 79311067 MLT1D 503 + 42 83 230200 11 1 2 28 chain 559856 chr1 249250621 + 79311129 79317159 L1PA2 6032 - 1 6031 365 149 0 1 3319 1 0 2561 chain 27046 chr1 249250621 + 79337871 79338294 LTR7B 505 + 0 495 96127 108 0 10 66 35 11 27 2 90 53 2 1 75 14 13 41 chain 28771 chr1 249250621 + 79346173 79346593 LTR7B 505 + 0 498 90012 96 4 19 69 3 66 6 1 0 14 8 10 26 4 5 51 1 0 77 4 3 56 chain 11406 chr1 249250621 + 79347638 79347768 L1PA7 6471 + 6316 6446 154672 130 chain 9773 chr1 249250621 + 79378331 79378456 MER49 923 + 173 298 161727 18 1 0 84 0 1 22 chain 351784 chr1 249250621 + 79396723 79401181 L1PA8A 6298 + 1778 6272 11552 90 1 4 348 0 1 288 0 1 10 1 0 138 0 3 291 0 1 16 0 4 179 0 1 219 8 1 21 3 5 19 0 4 53 0 1 254 5 1 105 1 0 37 1 2 899 0 1 6 0 5 16 3 4 19 2 1 150 0 22 491 3 1 80 2 3 194 0 2 28 8 6 5 1 0 5 0 1 207 0 1 20 1 0 45 2 3 123 1 0 59 chain 176232 chr1 249250621 + 79434450 79436962 MER61-int 3695 + 1180 3682 21336 13 10 11 140 1 0 53 0 4 176 17 15 200 13 24 95 0 1 115 19 22 72 3 0 12 13 0 69 0 16 183 0 3 5 3 0 16 1 0 185 4 0 134 9 11 10 17 13 85 1 0 33 0 1 4 8 6 164 0 1 4 1 0 76 8 5 362 8 0 53 11 10 9 1 0 7 0 1 45 6 0 38 chain 195812 chr1 249250621 + 79479549 79481773 L1PA4 6152 - 0 2233 19514 6 0 5 249 1 0 515 8 7 1093 5 11 347 chain 3778 chr1 249250621 + 79489830 79489880 MER21A 919 + 862 910 210693 43 2 0 5 chain 9221 chr1 249250621 + 79584737 79584866 MER30 238 - 5 147 164442 94 1 0 9 4 18 21 chain 27809 chr1 249250621 + 79586767 79587092 L1PA4 6152 - 18 341 93666 27 2 0 104 0 1 104 1 0 87 chain 27919 chr1 249250621 + 79596510 79596808 AluYd8 298 - 0 298 93282 298 chain 3709 chr1 249250621 + 79600827 79600871 MADE1 96 + 0 44 211806 44 chain 58515 chr1 249250621 + 79603486 79604485 MER11B 1079 + 0 1079 53691 22 0 1 24 5 99 311 18 17 22 36 25 17 6 8 116 11 11 21 4 11 16 1 0 17 14 4 16 39 43 16 8 9 53 0 1 137 13 7 26 1 0 29 chain 27135 chr1 249250621 + 79612974 79613334 THE1B 368 - 0 368 95814 75 1 0 98 6 0 23 1 0 113 0 15 20 1 2 22 chain 214140 chr1 249250621 + 79634386 79636759 L1PA4 6152 + 3779 6152 18218 2373 chain 11764 chr1 249250621 + 79645126 79645255 THE1B-int 1605 - 5 134 153202 129 chain 24323 chr1 249250621 + 79645469 79645828 THE1B 368 - 0 368 108531 75 1 0 91 2 0 9 3 1 11 22 21 105 0 15 40 chain 77320 chr1 249250621 + 79695945 79697041 MER11A 1151 + 0 1146 44826 79 0 8 143 1 0 64 0 11 11 35 0 10 0 2 354 6 9 11 3 4 38 1 5 67 4 5 13 1 59 90 16 15 87 1 0 61 chain 4364 chr1 249250621 + 79697971 79698021 MER11A 1151 + 244 294 202405 50 chain 2398 chr1 249250621 + 79698021 79698048 MER11A 1151 + 305 332 234234 27 chain 28884 chr1 249250621 + 79719943 79720243 AluYa5 310 - 10 310 89516 300 chain 9582 chr1 249250621 + 79721205 79721326 Tigger3a 397 + 216 337 162685 121 chain 30074 chr1 249250621 + 79722522 79722839 AluYb8 318 + 0 317 84587 317 chain 68989 chr1 249250621 + 79735183 79736141 LTR12C 1709 + 563 1709 48816 14 4 3 70 0 278 144 0 2 38 1 0 4 5 2 29 0 1 76 0 4 179 102 0 281 0 10 11 chain 19643 chr1 249250621 + 79738288 79738610 THE1B 368 + 0 348 128273 44 0 15 72 4 8 30 1 0 12 1 0 14 38 48 51 1 0 54 chain 23132 chr1 249250621 + 79739218 79739540 MLT2A2 560 - 231 560 114989 111 20 23 176 0 4 15 chain 10626 chr1 249250621 + 79784328 79784493 L1PB2 3958 - 120 276 157705 63 2 1 21 16 8 63 chain 11335 chr1 249250621 + 79786336 79786460 L1PA3long 6157 - 0 124 154942 124 chain 18676 chr1 249250621 + 79868219 79868433 L1PA5 6144 - 6 220 131007 214 chain 509866 chr1 249250621 + 79879873 79885976 L1PA5 6144 + 0 6136 6179 135 7 33 638 17 0 12 0 17 145 0 6 183 9 0 50 1 0 507 0 4 724 0 1 260 5 4 406 0 2 19 0 4 14 1 0 6 1 0 236 5 7 148 1 2 119 1 0 10 0 2 564 0 2 1034 1 0 483 2 0 213 6 0 6 0 6 134 chain 26581 chr1 249250621 + 79922786 79923187 MSTA-int 1630 + 1227 1628 97721 161 13 14 102 7 0 12 5 11 27 1 0 4 5 4 50 0 2 14 chain 11083 chr1 249250621 + 79930746 79930921 THE1D-int 1627 - 1284 1460 155875 74 33 34 68 chain 21590 chr1 249250621 + 79934209 79934488 AluY 311 + 28 306 121802 95 5 4 132 6 6 41 chain 27473 chr1 249250621 + 79954305 79954702 LTR7 482 - 13 482 94734 161 1 2 11 5 6 28 5 37 109 9 47 68 chain 286089 chr1 249250621 + 79955947 79959391 HERVH-int 3825 - 0 3825 14282 226 0 2 151 3 0 7 3 7 94 10 220 37 30 35 748 0 1 286 0 4 291 4 31 459 15 0 385 0 3 59 1 0 52 8 10 20 1 0 14 2 0 27 2 39 13 3 111 493 chain 541480 chr1 249250621 + 79976959 79982965 L1PA3long 6157 - 15 6157 2594 134 1 0 1260 0 3 1229 0 1 1132 0 2 458 0 1 1016 1 129 623 0 1 60 0 1 92 chain 132168 chr1 249250621 + 80006508 80007980 L1PA4 6152 - 9 1486 27599 152 0 1 682 0 4 638 chain 24368 chr1 249250621 + 80026413 80027009 LTR12C 1709 - 167 1059 108274 41 214 516 14 1 0 17 47 6 111 1 0 42 0 37 108 chain 53626 chr1 249250621 + 80059324 80060165 LTR12 884 + 0 884 56605 56 0 41 35 0 25 5 37 0 19 0 25 47 0 91 32 2 0 201 101 0 66 0 1 65 2 0 89 0 2 84 chain 33724 chr1 249250621 + 80070031 80070502 LTR21A 479 - 0 479 78056 68 13 12 10 11 9 104 3 19 193 1 0 7 5 2 33 1 0 22 chain 63815 chr1 249250621 + 80088374 80089272 LTR12 884 + 0 866 51090 91 0 66 199 0 22 247 122 0 117 0 2 122 chain 26470 chr1 249250621 + 80104446 80104850 LTR7 482 - 0 482 98163 49 16 18 109 0 1 7 1 32 25 11 17 109 8 46 69 chain 279790 chr1 249250621 + 80106109 80109765 HERVH-int 3825 - 0 3825 14651 225 0 2 152 3 0 7 1 4 97 147 362 678 0 1 198 8 13 474 0 1 235 1 0 545 13 3 49 0 1 67 22 1 11 2 1 15 2 0 13 2 40 12 83 26 12 1 0 9 2 1 24 0 1 15 1 0 530 chain 29359 chr1 249250621 + 80114181 80114489 AluYa5 310 - 2 310 87248 308 chain 272966 chr1 249250621 + 80139857 80143791 L1PB1 5432 - 10 3935 15020 18 1 0 12 1 0 22 1 0 26 0 1 11 1 0 5 25 14 11 1 0 6 2 0 15 1 0 45 1 0 14 6 5 5 0 1 5 1 0 38 2 0 9 2 0 3 2 0 12 3 2 4 1 0 20 23 57 47 9 6 25 8 0 177 2 1 4 0 4 171 3 0 111 14 12 38 2 0 200 4 0 45 0 1 16 0 3 246 0 1 169 6 4 41 0 2 12 10 0 235 0 4 283 0 3 54 13 10 74 0 1 137 0 1 31 1 4 53 22 22 231 1 6 84 17 8 99 1 4 205 5 1 95 6 11 193 0 1 217 1 0 161 chain 51375 chr1 249250621 + 80160077 80160715 PABL_A 660 + 14 652 58044 71 6 5 53 1 0 90 1 0 275 0 2 107 0 1 34 chain 29122 chr1 249250621 + 80162031 80162460 LTR7Y 441 - 5 441 88445 191 69 85 57 9 0 103 chain 289307 chr1 249250621 + 80163739 80167315 HERVH-int 3825 - 0 3825 14065 225 0 2 260 8 218 39 9 5 8 0 6 764 0 2 156 0 3 116 1 15 95 0 1 194 7 33 241 0 1 180 0 1 124 1 0 160 1 0 130 0 3 61 0 3 13 0 2 7 0 1 42 21 0 17 67 45 21 0 32 7 4 0 12 1 0 10 1 0 7 0 1 29 5 0 155 0 2 325 2 1 50 chain 28671 chr1 249250621 + 80167315 80167747 LTR7Y 441 - 0 441 90441 126 0 1 70 67 84 57 9 0 103 chain 78857 chr1 249250621 + 80168025 80168979 LTR5_Hs 974 + 0 974 44124 459 0 4 38 0 1 27 1 13 363 3 6 63 chain 3139 chr1 249250621 + 80215059 80215096 MADE1 96 + 48 85 222195 37 chain 46085 chr1 249250621 + 80261560 80262118 MER41A 554 - 0 554 61960 193 3 0 307 1 0 54 chain 28707 chr1 249250621 + 80323703 80324176 MER50B 698 - 44 528 90310 119 1 0 20 8 13 72 20 0 99 43 44 46 8 34 37 chain 150870 chr1 249250621 + 80332808 80334585 L1PA7 6471 - 8 1785 24492 5 0 2 835 1 0 666 1 0 269 chain 150000 chr1 249250621 + 80334585 80336402 L1PA7 6471 + 2832 4656 24609 110 1 2 880 0 1 9 2 3 31 4 0 500 0 1 174 0 7 24 1 0 4 0 1 77 chain 111605 chr1 249250621 + 80349289 80350831 THE1B-int 1605 - 0 1605 33777 108 23 63 48 14 9 194 10 11 616 9 11 57 31 56 432 chain 454107 chr1 249250621 + 80354300 80360413 L1PA3long 6157 - 1 6149 8608 6 0 1 101 6 59 2296 1 0 4 0 1 172 0 1 1188 0 1 4 1 0 17 0 1 31 9 7 214 7 0 16 0 1 4 1 0 240 0 2 148 5 0 340 131 123 166 0 1 46 25 0 246 9 16 111 53 54 137 49 49 30 146 145 34 16 30 78 0 2 25 chain 114904 chr1 249250621 + 80370759 80372285 THE1B-int 1605 - 5 1605 32819 670 13 22 65 0 14 76 1 0 49 20 48 205 0 25 47 0 3 71 14 15 89 6 0 146 0 1 54 chain 22086 chr1 249250621 + 80372285 80372658 THE1B 368 - 0 368 119859 74 1 0 101 31 24 27 33 39 55 0 1 23 2 0 11 2 0 13 chain 415234 chr1 249250621 + 80394069 80399424 HERVL-int 5654 + 0 5654 9660 13 0 62 157 9 11 20 0 1 271 0 1 126 0 1 141 1 2 64 0 5 33 0 2 161 16 17 32 0 4 326 6 7 4 1 0 96 0 3 43 11 15 295 33 38 67 1 206 233 0 1 496 12 21 318 0 2 73 9 10 427 0 1 160 0 2 71 0 5 122 0 1 182 5 6 711 7 0 160 24 6 47 0 1 218 6 9 147 chain 549584 chr1 249250621 + 80404094 80410104 L1PA2 6032 - 23 6032 1507 1502 1 0 2383 1 0 1568 1 2 554 chain 89082 chr1 249250621 + 80418889 80419960 MER11B 1079 - 15 1079 39973 37 2 1 144 0 1 115 6 0 507 3 0 30 0 2 227 chain 138658 chr1 249250621 + 80429882 80431711 L1PA7 6471 - 6 1749 26373 606 101 20 139 0 2 77 3 0 54 11 12 200 2 1 335 1 0 40 8 5 252 chain 13769 chr1 249250621 + 80451024 80451178 L1PA4 6152 + 5997 6151 145367 154 chain 264772 chr1 249250621 + 80464973 80468103 L1PA6 6164 + 3024 6156 15453 189 1 0 412 0 1 70 1 0 1694 1 3 113 0 2 333 2 1 314 chain 31799 chr1 249250621 + 80470032 80470404 L1PA5 6144 - 1 371 81167 203 2 0 167 chain 28557 chr1 249250621 + 80479312 80479609 AluYk12 309 + 0 297 90933 297 chain 7058 chr1 249250621 + 80491328 80491416 MLT2C2 476 + 48 136 177048 88 chain 23693 chr1 249250621 + 80515909 80516259 LTR18A 364 + 7 364 112066 68 0 2 6 2 0 15 17 2 111 5 18 60 0 1 40 5 13 21 chain 10632 chr1 249250621 + 80518831 80519005 LTR12C 1709 - 877 1010 157690 88 41 0 45 chain 94254 chr1 249250621 + 80543057 80544186 L1PA7 6471 + 5340 6470 38276 127 0 8 146 1 0 842 6 0 7 chain 68558 chr1 249250621 + 80553883 80554631 L1PA3long 6157 - 0 748 49007 748 chain 65098 chr1 249250621 + 80576478 80577326 MER11A 1151 - 166 1151 50528 17 0 1 48 4 5 55 5 38 12 0 1 128 0 1 120 1 0 12 12 13 52 0 2 36 0 1 54 0 1 94 8 5 135 0 99 55 chain 9864 chr1 249250621 + 80582654 80582808 MER57-int 2662 + 877 1031 161270 43 15 16 10 2 1 84 chain 540154 chr1 249250621 + 80598233 80604262 L1PA3long 6157 - 0 6156 2798 932 0 1 358 0 1 1694 1 0 2267 0 128 288 1 0 168 0 1 154 13 14 143 3 0 7 chain 5776 chr1 249250621 + 80611295 80611359 L1PA6 6164 + 5912 5976 187383 64 chain 15760 chr1 249250621 + 80611379 80611564 L1PA6 6164 + 5977 6162 139083 185 chain 10846 chr1 249250621 + 80611592 80611720 HERVL-int 5654 - 5526 5654 156803 128 chain 9118 chr1 249250621 + 80645337 80645440 L1PA5 6144 + 6037 6140 164976 103 chain 24996 chr1 249250621 + 80676928 80677226 AluSp 311 - 1 299 104813 298 chain 29359 chr1 249250621 + 80690296 80690604 AluYa5 310 - 2 310 87247 308 chain 29064 chr1 249250621 + 80752821 80753149 L1PA5 6144 - 2220 2547 88296 246 1 0 81 chain 189951 chr1 249250621 + 80753149 80755354 L1PA5 6144 + 3944 6129 20053 423 2 0 55 0 1 165 0 1 36 1 2 232 0 1 547 16 2 10 0 1 471 1 0 99 7 0 133 1 0 6 chain 262881 chr1 249250621 + 80799513 80802872 L1P2 5180 + 1841 5178 15540 7 0 8 453 29 10 741 1 2 146 2 1 463 48 35 185 0 1 185 4 7 495 0 4 298 8 5 83 7 0 7 0 7 105 1 0 47 1 0 38 1 0 4 chain 45057 chr1 249250621 + 80803356 80803899 L1PA7 6471 + 5916 6458 62981 495 1 0 47 chain 55867 chr1 249250621 + 80809416 80810110 L1PA8A 6298 - 636 1335 55200 88 0 1 534 0 4 72 chain 51328 chr1 249250621 + 80810112 80810738 L1PA8A 6298 + 5666 6291 58080 512 7 6 107 chain 7658 chr1 249250621 + 80848196 80848522 MLT1B 390 + 30 350 173171 70 213 207 43 chain 7034 chr1 249250621 + 80859120 80859477 MLT1B 390 + 0 360 177225 23 255 258 79 chain 549927 chr1 249250621 + 80860036 80866179 L1PA3long 6157 - 0 6155 1457 151 5 0 7 0 5 1628 0 4 941 0 2 242 1 0 332 0 4 1599 1 0 50 0 3 141 0 1 561 1 0 50 0 1 433 chain 311870 chr1 249250621 + 80872480 80875940 L1PA3long 6157 + 2706 6157 12927 485 0 4 223 8 0 1966 1 0 101 4 0 672 chain 21641 chr1 249250621 + 80903931 80904295 THE1D 372 - 9 372 121612 68 23 27 68 24 28 109 16 7 56 chain 152736 chr1 249250621 + 80924382 80926237 L1PA7 6471 - 2 1861 24261 11 0 2 249 12 9 187 0 3 386 2 5 408 3 0 260 1 0 145 1 0 135 0 4 55 chain 7252 chr1 249250621 + 80966033 80966122 L1P1 4361 - 4250 4338 175752 4 1 0 84 chain 207125 chr1 249250621 + 80966122 80968510 L1PA5 6144 + 3766 6143 18708 112 0 1 544 0 1 210 0 1 17 1 0 43 0 3 303 14 13 82 15 0 281 0 1 609 0 1 144 3 1 10 chain 21563 chr1 249250621 + 80978859 80979230 THE1C 375 - 4 375 121915 22 1 0 74 1 0 77 10 4 7 0 3 41 49 68 7 14 0 68 chain 93557 chr1 249250621 + 80979614 80980661 L1PA5 6144 - 21 1071 38491 819 7 10 221 chain 68273 chr1 249250621 + 80981494 80982457 L1PA8A 6298 - 7 911 49133 104 15 14 92 0 1 180 0 1 84 4 0 137 1 0 30 2 1 73 0 1 59 64 6 15 1 4 102 chain 10325 chr1 249250621 + 81013055 81013182 AluY 311 + 6 132 159009 117 1 0 9 chain 34552 chr1 249250621 + 81013192 81013627 LTR10C 591 + 137 562 76831 374 10 0 51 chain 15794 chr1 249250621 + 81013656 81013849 MER4E1 777 + 572 769 138970 31 0 4 162 chain 15172 chr1 249250621 + 81040162 81040365 MLT2A2 560 - 354 560 140848 23 1 0 164 1 5 14 chain 120085 chr1 249250621 + 81040365 81041956 HERVL-int 5654 - 0 1593 31029 36 0 3 185 4 6 390 0 1 10 9 10 256 6 0 24 3 0 51 5 6 301 4 8 226 2 1 79 chain 6519 chr1 249250621 + 81041973 81042047 MLT2A2 560 - 486 560 181096 74 chain 53387 chr1 249250621 + 81049162 81049921 LTR12 884 + 0 727 56769 25 1 0 113 24 8 16 14 0 106 20 20 48 1 2 40 2 0 349 chain 65226 chr1 249250621 + 81057844 81058625 LTR17 781 - 0 781 50459 12 0 1 379 1 0 61 0 1 23 10 0 176 0 9 119 chain 178759 chr1 249250621 + 81063176 81065930 L1PB1 5432 + 2788 5423 21101 28 30 27 43 0 3 118 2 0 3 7 0 300 5 10 165 0 1 215 1 0 4 15 19 211 0 3 201 5 12 225 20 19 115 0 2 114 4 0 51 0 1 267 7 2 57 82 0 89 53 21 24 1 0 8 24 23 50 19 17 45 1 0 15 27 15 15 0 15 5 2 0 24 23 21 13 1 0 14 1 0 5 chain 93344 chr1 249250621 + 81075445 81076628 L1PA8 5853 - 0 1190 38553 93 1 0 19 2 1 16 2 1 25 5 0 7 0 12 71 2 0 44 1 0 304 5 0 113 3 0 59 0 1 72 1 9 147 0 5 191 chain 269963 chr1 249250621 + 81100292 81104001 MER61-int 3695 + 0 3695 15182 30 4 0 16 1 0 226 1 0 109 0 1 28 2 3 124 7 6 100 2 0 198 9 12 212 0 1 65 1 0 120 2 1 72 5 10 69 1 2 65 2 1 24 0 5 10 22 0 109 0 5 550 0 1 5 8 11 193 10 0 162 0 3 45 0 3 9 10 10 120 29 13 19 1 0 95 1 0 137 0 5 9 11 8 55 0 15 60 2 0 9 2 0 40 9 11 142 1 0 116 4 6 219 chain 36920 chr1 249250621 + 81152431 81152931 THE1D-int 1627 - 1108 1612 73633 37 0 1 45 36 38 315 0 1 67 chain 41632 chr1 249250621 + 81160707 81161313 L1PA8 5853 - 0 598 67116 93 1 0 12 5 4 43 9 8 11 1 0 23 8 0 26 1 8 12 2 0 38 9 5 6 1 0 49 1 0 103 0 5 152 chain 196627 chr1 249250621 + 81167377 81169574 L1PA3long 6157 + 3949 6157 19453 943 3 15 991 1 0 259 chain 4148 chr1 249250621 + 81193429 81193480 MLT1B 390 - 29 81 205265 8 0 1 43 chain 309204 chr1 249250621 + 81198512 81201923 L1PA3long 6157 + 2744 6157 13037 94 0 2 458 2 0 627 0 1 44 0 1 2186 chain 6159 chr1 249250621 + 81214858 81215035 Tigger5 388 + 179 350 183911 39 53 54 8 5 0 9 13 11 50 chain 485060 chr1 249250621 + 81249250 81255340 L1PA7 6471 + 321 6461 7557 64 6 6 20 1 2 13 15 16 166 0 1 142 3 0 5 0 3 35 6 2 407 7 11 281 17 21 13 6 41 63 0 1 124 0 1 597 1 3 272 15 1 784 0 2 98 2 7 21 0 4 33 0 1 320 0 1 582 0 1 722 0 1 271 5 6 46 0 1 87 1 4 207 2 1 465 19 18 146 chain 8711 chr1 249250621 + 81263549 81263656 MLT2B2 565 - 456 563 167141 107 chain 16235 chr1 249250621 + 81324600 81324795 L1PA5 6144 + 5954 6144 137658 80 5 0 110 chain 7707 chr1 249250621 + 81335011 81335106 L1PA4 6152 - 0 98 172888 13 0 3 82 chain 6001 chr1 249250621 + 81345440 81345514 MER2 342 - 131 205 185230 74 chain 71931 chr1 249250621 + 81366614 81367561 L1PREC2 3366 + 1439 2382 47511 208 0 3 23 0 1 86 7 1 10 6 5 188 1 0 4 0 1 280 3 0 28 0 1 93 0 1 10 chain 29667 chr1 249250621 + 81387193 81387505 AluYb8 318 + 0 312 85970 312 chain 9806 chr1 249250621 + 81391086 81391258 MLT1B 390 + 242 390 161568 12 37 11 62 0 2 61 chain 565919 chr1 249250621 + 81404891 81410942 L1HS 6032 - 0 6024 161 14 27 0 6010 chain 493712 chr1 249250621 + 81411753 81417228 L1PA3long 6157 + 11 6153 7189 83 0 526 161 0 128 640 0 1 138 0 8 2707 0 2 524 0 1 973 0 1 249 chain 79803 chr1 249250621 + 81479872 81480878 L1PA8 5853 + 3702 4721 43681 46 0 1 142 0 1 63 0 1 36 3 5 62 0 2 125 9 8 340 2 8 15 0 1 163 chain 59571 chr1 249250621 + 81501056 81501755 SVA_B 1603 + 914 1603 53068 62 1 0 14 1 0 499 1 2 15 9 0 97 chain 51413 chr1 249250621 + 81554872 81555526 L1PA7 6471 - 14 684 58027 128 0 8 12 19 11 178 0 11 176 11 16 130 chain 9772 chr1 249250621 + 81606918 81607065 MER1B 344 - 0 175 161734 15 0 1 42 17 44 73 chain 9459 chr1 249250621 + 81607211 81607336 MER85 139 + 4 139 163279 85 1 11 39 chain 118630 chr1 249250621 + 81643468 81644861 LTR12C 1709 - 0 1709 31565 481 0 4 107 9 325 505 9 5 282 chain 9788 chr1 249250621 + 81676685 81676810 MER85 139 + 4 139 161662 86 1 11 38 chain 33688 chr1 249250621 + 81680942 81681369 L1PA6 6164 - 2 516 78110 173 0 88 75 1 0 178 chain 16310 chr1 249250621 + 81709850 81710051 L1PA7 6471 - 806 1011 135892 43 2 0 6 0 2 8 0 4 142 chain 67512 chr1 249250621 + 81710051 81710840 L1PA7 6471 + 5678 6470 49439 328 0 1 187 0 1 187 0 1 87 chain 38814 chr1 249250621 + 81710967 81711408 LTR7 482 + 0 472 70996 261 0 31 180 chain 297293 chr1 249250621 + 81711420 81715168 HERVH-int 3825 + 0 3825 13567 172 0 3 183 0 1 43 0 1 129 5 0 38 1 0 9 2 1 24 70 0 14 1 0 13 3 0 6 58 12 7 1 0 64 21 0 7 1 0 51 0 1 307 2 0 140 15 0 459 5 32 584 0 1 818 8 218 487 chain 2304 chr1 249250621 + 81712054 81712096 HERVH-int 3825 + 604 683 222412 14 1 0 13 3 0 8 0 41 3 chain 39171 chr1 249250621 + 81716441 81716892 LTR7 482 + 0 482 70505 247 0 31 204 chain 21832 chr1 249250621 + 81756232 81756589 THE1B 368 - 1 368 120887 84 5 0 40 30 47 5 2 0 18 2 1 117 11 12 43 chain 23874 chr1 249250621 + 81895590 81895866 AluSp 311 - 24 300 111065 276 chain 23696 chr1 249250621 + 81901503 81901797 AluSp 311 + 4 299 112052 145 6 7 143 chain 8108 chr1 249250621 + 81927761 81928096 LTR12 884 + 288 677 170443 88 220 274 27 chain 2958 chr1 249250621 + 81927864 81927911 LTR12 884 + 253 367 225906 21 1 68 25 chain 4949 chr1 249250621 + 81953967 81954101 L1M4c 1769 + 168 248 195713 24 61 7 49 chain 9765 chr1 249250621 + 81963617 81963729 AluY 311 + 8 120 161768 112 chain 22572 chr1 249250621 + 81986117 81986457 THE1D 372 + 0 344 117708 56 15 6 125 33 39 12 0 6 82 0 1 17 chain 3925 chr1 249250621 + 81992980 81993107 MLT1A0 366 + 23 149 208499 24 68 67 35 chain 25436 chr1 249250621 + 81994049 81994360 AluYk4 311 + 0 310 102525 54 11 10 246 chain 23703 chr1 249250621 + 82007352 82007649 AluSp 311 + 0 288 112015 125 10 1 162 chain 22980 chr1 249250621 + 82068010 82068298 AluSg7 307 + 13 299 115717 120 0 1 160 3 0 5 chain 41577 chr1 249250621 + 82080787 82081338 LTR12_ 688 + 0 688 67190 53 0 41 45 23 7 44 1 2 156 3 104 213 0 10 13 chain 392482 chr1 249250621 + 82148999 82154769 L1PB1 5432 - 8 5373 10377 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 30 18 11 1 2 41 2 1 15 2 1 53 2 0 9 20 15 27 37 0 11 1 2 50 2 3 56 308 0 287 0 1 78 3 0 176 1 3 200 3 0 35 1 0 70 0 1 357 1 0 4 0 1 57 1 4 514 1 0 624 1 6 82 6 0 262 0 2 14 0 1 205 26 22 58 0 4 12 16 0 27 0 9 337 6 10 113 54 31 39 12 10 103 8 10 84 1 0 506 88 90 148 5 6 106 0 1 198 19 8 19 chain 23969 chr1 249250621 + 82193127 82193414 AluSc5 308 - 20 307 110519 287 chain 8340 chr1 249250621 + 82200056 82200264 MLT1C 463 + 216 427 169176 44 92 95 72 chain 24065 chr1 249250621 + 82200446 82200733 AluSp 311 + 10 296 109955 199 1 0 87 chain 8340 chr1 249250621 + 82200813 82201021 MLT1C 463 + 216 427 169175 44 92 95 72 chain 25500 chr1 249250621 + 82218817 82219171 THE1B 368 - 13 368 102220 62 1 0 74 3 2 15 0 1 28 2 1 19 0 2 5 5 3 98 0 5 25 2 0 15 chain 24336 chr1 249250621 + 82252560 82252919 THE1A 353 + 0 353 108441 15 2 0 32 0 1 47 1 0 12 33 27 199 0 2 18 chain 14567 chr1 249250621 + 82305100 82305438 L1PB1 5432 - 19 329 142684 9 1 0 9 0 3 23 1 0 23 2 0 14 13 10 13 47 34 38 1 0 15 3 2 50 3 1 11 16 11 13 1 0 20 1 0 11 chain 128875 chr1 249250621 + 82336623 82338084 L1PA5 6144 - 1 1468 28341 159 0 1 707 1 5 317 1 0 172 0 2 104 chain 22350 chr1 249250621 + 82398387 82398676 AluSp 311 - 20 302 118703 9 0 2 137 13 5 6 1 0 123 chain 4137 chr1 249250621 + 82487230 82487285 THE1D 372 + 318 372 205409 22 1 0 32 chain 6743 chr1 249250621 + 82490593 82490677 MLT2B3 573 + 0 84 179372 84 chain 9180 chr1 249250621 + 82499870 82499997 L1PREC2 3366 + 2662 2786 164657 55 1 0 32 5 3 34 chain 3884 chr1 249250621 + 82502183 82502227 LTR16E2 555 - 0 44 209123 44 chain 176077 chr1 249250621 + 82520007 82522309 L1P2 5180 - 1062 3374 21348 26 0 1 155 4 8 612 1 11 14 1 0 96 7 6 148 10 11 187 0 1 266 3 8 241 14 0 118 0 4 399 chain 27581 chr1 249250621 + 82533246 82533638 LTR7 482 - 38 482 94402 60 0 2 76 0 1 8 0 31 43 1 12 45 21 28 138 chain 290261 chr1 249250621 + 82534899 82538413 HERVH-int 3825 - 0 3825 14004 40 1 2 183 3 8 254 8 218 138 0 1 419 0 6 102 1 0 156 0 1 579 9 37 74 0 5 146 0 2 63 0 10 23 1 0 66 0 1 5 1 0 63 15 0 441 0 3 13 0 2 9 0 1 55 2 1 18 26 76 24 1 0 10 1 0 38 5 0 310 0 11 211 chain 9581 chr1 249250621 + 82538415 82538520 LTR7 482 - 0 105 162687 105 chain 73552 chr1 249250621 + 82569756 82570555 L1PA2 6032 - 2 801 46762 799 chain 16703 chr1 249250621 + 82581505 82581697 L1PA5 6144 + 5943 6135 136396 192 chain 537850 chr1 249250621 + 82596613 82602574 L1PA3long 6157 - 17 6103 3176 2577 7 3 1736 4 3 628 2 1 122 0 2 162 1 129 624 0 1 98 chain 30034 chr1 249250621 + 82609492 82609865 THE1C 375 + 0 373 84698 154 0 1 196 1 0 22 chain 5291 chr1 249250621 + 82616141 82616231 MADE1 96 + 2 96 192104 31 14 17 13 0 1 32 chain 19843 chr1 249250621 + 82623664 82624027 THE1D 372 + 1 372 127671 96 12 11 47 36 39 12 40 45 29 0 1 91 chain 14052 chr1 249250621 + 82648484 82648695 MER30 238 + 0 238 144371 91 5 32 6 3 0 29 1 7 25 3 0 48 chain 7577 chr1 249250621 + 82689073 82689161 HERVK-int 6823 - 1560 1648 173690 88 chain 284645 chr1 249250621 + 82701244 82705254 L1PA10 4194 - 44 4019 14376 33 3 0 504 0 1 274 3 4 193 32 16 161 2 1 192 16 15 4 1 0 77 0 4 8 2 0 29 6 7 15 1 2 94 1 0 81 0 2 203 0 4 458 7 1 122 0 1 119 1 5 41 0 3 5 10 4 105 9 41 18 0 1 146 2 0 189 0 1 85 0 1 294 15 19 76 4 3 85 1 0 7 7 1 15 1 0 10 1 0 6 2 1 9 2 1 18 2 0 6 61 35 8 1 0 15 8 7 14 1 0 6 8 7 5 2 0 9 11 7 10 2 0 6 3 0 13 2 0 12 chain 557363 chr1 249250621 + 82715728 82721745 L1PA2 6032 + 2 6021 572 5793 0 2 224 chain 25914 chr1 249250621 + 82789838 82790163 AluYk4 311 + 0 311 100359 97 4 1 28 3 0 109 8 0 76 chain 215722 chr1 249250621 + 82822726 82825841 HERVH-int 3825 - 705 3825 18126 24 1 4 23 0 7 150 6 0 694 2 0 391 0 1 169 0 4 60 0 3 5 11 8 107 1 0 39 9 0 205 15 0 213 1 0 235 1 0 28 0 151 10 21 81 14 279 92 22 15 16 30 2 1 129 0 1 203 chain 107501 chr1 249250621 + 82845850 82847245 L1PA8 5853 + 4463 5853 34845 85 0 1 374 1 3 84 2 0 72 0 1 39 5 6 42 8 7 387 1 0 37 8 7 60 1 0 12 1 0 8 7 0 6 0 6 39 3 2 19 2 1 92 chain 51297 chr1 249250621 + 82855371 82855974 L1PA7 6471 - 1 603 58113 7 2 0 90 0 1 504 chain 16491 chr1 249250621 + 82855975 82856163 L1PA7 6471 + 5684 5872 136956 188 chain 28566 chr1 249250621 + 82882026 82882346 AluYa5 310 + 0 310 90891 126 7 0 9 3 0 175 chain 78939 chr1 249250621 + 82904280 82905236 L1PA7 6471 + 5508 6464 44088 106 0 3 81 0 2 259 3 1 51 6 0 33 0 6 409 3 0 5 chain 29322 chr1 249250621 + 82963304 82963615 AluYa5 310 - 0 310 87426 184 1 0 126 chain 20351 chr1 249250621 + 82992368 82992654 L1PB 1623 - 1223 1503 126059 101 0 1 29 1 0 77 2 0 5 7 6 10 3 0 51 chain 19556 chr1 249250621 + 82993572 82994207 L1PB1 5432 + 4913 5404 128502 190 352 80 11 1 0 26 4 135 15 1 0 21 1 0 13 chain 6694 chr1 249250621 + 82993989 82994109 L1PB1 5432 - 105 211 179732 19 24 12 15 1 0 44 1 0 16 chain 316202 chr1 249250621 + 82995403 82999962 L1PA11 4918 - 351 4905 12755 13 1 0 15 48 35 16 15 13 67 2 1 13 2 1 54 2 3 11 5 4 125 0 1 181 1 0 78 5 7 102 2 0 5 1 3 162 0 2 218 1 0 82 6 6 150 1 2 115 13 3 78 2 0 178 0 3 7 4 5 88 0 4 121 0 3 44 1 2 125 2 1 172 15 8 16 8 10 80 0 3 317 4 1 200 15 26 178 1 0 148 31 33 68 0 1 7 0 1 65 12 22 306 18 17 194 4 8 37 18 18 124 23 23 117 10 7 33 1 0 52 30 27 15 3 2 6 2 0 36 2 0 29 chain 29890 chr1 249250621 + 83013058 83013370 AluYb8 318 - 6 318 85132 312 chain 29672 chr1 249250621 + 83042654 83042964 AluYa5 310 - 0 310 85942 310 chain 203388 chr1 249250621 + 83049609 83051889 L1PA4 6152 + 3860 6151 18968 77 0 8 272 4 0 991 0 1 659 9 16 8 1 0 259 chain 27617 chr1 249250621 + 83075932 83076287 THE1A 353 + 0 353 94303 111 1 0 91 2 1 150 chain 43078 chr1 249250621 + 83088110 83088656 MER41A 554 + 0 554 65322 76 0 1 391 0 5 17 1 2 41 1 2 19 chain 24938 chr1 249250621 + 83092675 83092994 MER41A 554 + 0 320 105124 40 6 7 273 chain 11853 chr1 249250621 + 83093046 83093190 MER41A 554 + 410 554 152822 144 chain 4949 chr1 249250621 + 83094291 83094345 MER50 708 - 654 708 195716 54 chain 12921 chr1 249250621 + 83115711 83116027 L1PB1 5432 + 5146 5430 148553 12 5 1 9 2 0 52 18 16 41 45 31 11 10 8 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 8 chain 140324 chr1 249250621 + 83125968 83127473 L1HS 6032 + 4523 6031 26095 6 0 3 1499 chain 65102 chr1 249250621 + 83133951 83134682 L1PA4 6152 - 1 732 50526 731 chain 45367 chr1 249250621 + 83186325 83187060 L1MA1 4479 - 289 995 62638 17 9 1 13 12 8 9 1 0 35 2 0 29 5 4 122 3 0 5 1 0 88 1 0 14 2 0 19 1 0 71 1 0 16 1 0 4 1 0 6 15 14 41 19 19 79 0 1 57 2 0 34 chain 121194 chr1 249250621 + 83241602 83243030 LTR12C 1709 - 2 1709 30635 479 0 4 104 3 1 8 1 0 97 0 278 299 8 9 306 1 0 122 chain 21155 chr1 249250621 + 83264124 83264486 THE1B 368 - 0 368 123357 56 1 2 10 2 0 57 8 15 14 0 1 4 1 0 4 0 5 7 31 24 51 1 0 4 5 7 87 0 1 19 chain 30118 chr1 249250621 + 83320416 83320831 L1PA7 6471 - 1 372 84428 4 1 0 83 0 1 238 44 0 45 chain 74886 chr1 249250621 + 83332456 83333375 L1PA5 6144 - 0 918 46069 145 13 18 136 4 0 156 24 22 441 chain 46194 chr1 249250621 + 83350020 83350631 LTR12 884 - 0 884 61853 155 3 107 222 0 22 127 0 107 35 0 41 44 1 0 24 chain 26906 chr1 249250621 + 83418556 83419170 L1PB1 5432 - 8 564 96605 4 1 0 16 1 0 13 1 0 21 1 0 22 64 48 4 1 0 15 1 0 30 1 0 14 1 0 16 2 1 50 3 1 11 16 11 13 1 0 20 41 11 50 65 70 115 chain 27340 chr1 249250621 + 83420993 83421405 LTR7 482 + 0 482 95144 43 34 72 109 22 54 204 chain 277377 chr1 249250621 + 83421420 83425057 HERVH-int 3825 + 13 3825 14785 314 8 7 53 0 1 114 11 7 26 1 0 6 1 0 5 1 72 13 3 0 8 16 17 41 43 0 18 63 0 42 0 1 21 1 0 64 0 3 224 13 14 346 9 0 40 1 0 215 4 31 229 0 1 31 26 0 97 0 1 995 9 11 39 8 218 72 0 5 133 0 2 132 0 2 141 chain 94899 chr1 249250621 + 83439684 83440969 HSMAR1 1287 - 9 1279 38125 183 1 0 4 0 1 142 24 24 12 0 3 211 7 10 128 20 0 435 0 1 103 2 0 13 chain 26990 chr1 249250621 + 83474317 83474623 AluYk4 311 - 5 311 96314 306 chain 22502 chr1 249250621 + 83490919 83491202 AluY 311 + 20 304 118017 110 1 2 172 chain 16115 chr1 249250621 + 83495193 83495377 L1PA7 6471 + 6284 6468 138007 184 chain 24296 chr1 249250621 + 83496716 83497073 THE1B 368 + 0 368 108674 44 5 20 108 10 9 11 2 0 93 9 8 75 chain 123662 chr1 249250621 + 83497073 83498639 THE1B-int 1605 + 0 1605 29822 430 0 25 10 0 2 51 4 5 782 11 21 140 0 1 92 1 0 4 0 1 41 chain 24558 chr1 249250621 + 83498639 83498972 THE1B 368 + 0 344 107207 39 0 15 54 2 3 61 1 0 6 0 1 13 4 0 101 1 0 51 chain 6349 chr1 249250621 + 83501470 83501545 LTR12D 1347 - 812 887 182389 75 chain 156465 chr1 249250621 + 83502597 83504489 L1PA7 6471 + 4573 6469 23801 89 6 10 73 6 7 545 1 3 410 5 4 744 2 0 11 chain 36066 chr1 249250621 + 83515159 83515592 L1PA6 6164 + 5733 6161 74809 9 0 1 409 6 0 9 chain 127488 chr1 249250621 + 83516008 83517609 THE1A-int 1579 - 0 1579 28695 166 27 0 53 1 0 39 9 0 90 0 13 1201 0 2 15 chain 26586 chr1 249250621 + 83517609 83517964 THE1A 353 - 0 353 97706 155 1 0 88 6 5 105 chain 23718 chr1 249250621 + 83561305 83561739 L1PA16 3655 - 36 510 111950 16 63 102 82 1 3 115 14 12 64 14 16 5 1 0 59 chain 3544 chr1 249250621 + 83576453 83576492 L1MB1 2102 - 116 155 214640 39 chain 542038 chr1 249250621 + 83633103 83639264 L1PA4 6152 + 3 6151 2495 439 0 1 133 1 0 260 17 0 50 0 1 35 0 1 2248 1 0 11 0 1 2509 0 2 457 chain 543041 chr1 249250621 + 83647857 83653884 L1PA2 6032 + 2 6032 2333 72 0 1 181 1 0 66 0 6 386 8 1 433 0 1 2669 0 1 380 0 1 1243 0 1 422 5 0 7 0 5 154 chain 47357 chr1 249250621 + 83674110 83674733 LTR9 672 - 13 672 60932 16 1 2 102 8 42 427 1 0 23 1 3 44 chain 5828 chr1 249250621 + 83686009 83686080 MLT1B 390 - 26 97 186877 71 chain 11208 chr1 249250621 + 83693508 83693669 MER30 238 - 0 177 155390 111 4 21 35 1 0 10 chain 73914 chr1 249250621 + 83696087 83696889 L1PA3long 6157 + 5354 6156 46558 802 chain 29177 chr1 249250621 + 83708239 83708552 AluYb8 318 + 0 316 88167 116 0 3 197 chain 85166 chr1 249250621 + 83717035 83718134 MER11A 1151 - 0 1151 41463 66 1 0 173 18 50 328 0 1 89 0 1 54 0 1 60 0 2 12 1 0 10 0 11 65 1 0 96 2 1 44 0 8 79 chain 542529 chr1 249250621 + 83729290 83735306 L1PA3long 6157 + 1 6152 2417 151 0 1 623 0 128 1805 0 5 1613 0 1 1824 chain 74469 chr1 249250621 + 83748167 83749054 L1PA8A 6298 - 8 901 46288 690 0 1 27 0 2 79 0 3 91 chain 281908 chr1 249250621 + 83766903 83770686 L1PB1 5432 + 1692 5420 14541 560 0 1 234 5 6 30 0 1 318 1 0 358 6 6 59 0 1 263 9 10 194 38 4 249 7 0 212 0 1 262 36 39 108 0 13 482 1 2 9 5 0 24 1 0 9 16 11 11 4 2 48 7 6 12 1 0 42 2 1 16 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 206296 chr1 249250621 + 83804703 83806943 L1PA2 6032 - 0 2233 18768 143 7 0 2090 chain 63720 chr1 249250621 + 83806943 83807640 L1PA2 6032 + 3103 3801 51051 441 1 2 255 chain 546795 chr1 249250621 + 83816096 83822148 L1PA2 6032 - 4 6032 1853 374 0 1 994 22 0 1280 8 6 317 0 1 6 2 0 1793 0 1 999 1 0 256 chain 25857 chr1 249250621 + 83836412 83836772 THE1B 368 - 0 368 100619 124 7 0 25 1 0 20 1 3 22 1 0 115 0 15 44 chain 117760 chr1 249250621 + 83836782 83838325 THE1B-int 1605 - 11 1578 31876 410 14 9 212 1 0 4 2 3 279 0 1 101 10 14 104 0 25 315 1 4 23 4 0 63 chain 49782 chr1 249250621 + 83842803 83843397 L1PA7 6471 - 10 604 59174 14 1 0 345 0 1 234 chain 8751 chr1 249250621 + 83862290 83862399 THE1B 368 - 260 368 166917 26 1 0 82 chain 20350 chr1 249250621 + 83895154 83895450 L1PA8 5853 + 5564 5853 126062 44 2 0 74 10 8 5 1 0 45 2 1 19 2 1 92 chain 26379 chr1 249250621 + 83916771 83917059 L1PA5 6144 - 2 290 98497 288 chain 11048 chr1 249250621 + 83995249 83995422 L1P3 4156 - 83 255 156020 61 13 11 79 4 5 16 chain 19192 chr1 249250621 + 83995444 83995816 L1PA11 4918 + 4231 4578 129551 97 4 0 65 2 1 13 4 2 49 0 1 15 81 65 15 1 0 13 2 0 11 chain 9717 chr1 249250621 + 84005520 84005640 L1PA7 6471 + 6347 6467 161998 120 chain 5154 chr1 249250621 + 84039537 84039596 MER101B 537 + 146 205 193513 59 chain 25689 chr1 249250621 + 84065628 84065999 THE1D 372 - 0 372 101336 176 2 0 5 27 34 19 4 0 138 chain 3751 chr1 249250621 + 84073430 84073475 L1MA7 2200 + 1991 2036 211118 45 chain 20340 chr1 249250621 + 84076802 84077134 THE1D 372 - 40 370 126105 108 2 1 23 14 16 52 5 9 44 9 10 22 9 1 44 chain 13907 chr1 249250621 + 84130665 84130895 MER30 238 + 0 237 144892 89 15 29 7 4 0 74 15 12 26 chain 23208 chr1 249250621 + 84135484 84135791 THE1B-int 1605 + 487 1605 114653 59 0 811 248 chain 452813 chr1 249250621 + 84150206 84155314 L1PA4 6152 - 9 6146 8663 251 1 0 659 0 1 1792 0 3 225 0 3 119 0 1 1335 0 18 641 0 996 18 0 8 67 chain 24264 chr1 249250621 + 84180197 84180563 THE1B 368 - 0 367 108880 56 7 1 5 0 3 63 3 2 8 1 0 16 17 24 21 1 0 168 chain 5263 chr1 249250621 + 84201286 84201472 MLT1F2 592 - 36 224 192387 62 101 104 18 1 0 4 chain 65617 chr1 249250621 + 84204515 84205288 LTR17 781 - 8 781 50289 446 0 1 17 10 0 181 0 9 119 chain 6608 chr1 249250621 + 84234903 84234997 UCON16 145 - 3 113 180403 43 0 1 19 1 16 31 chain 33559 chr1 249250621 + 84261911 84262401 MER4A1_ 611 - 7 504 78308 284 0 3 98 0 2 28 50 51 20 1 2 9 chain 10291 chr1 249250621 + 84275064 84275201 L1PB2 3958 + 3704 3838 159174 49 2 0 22 1 0 63 chain 140004 chr1 249250621 + 84290493 84292062 L1PA5 6144 - 6 1576 26144 672 0 1 897 chain 141847 chr1 249250621 + 84346362 84347916 L1PA3long 6157 + 4583 6142 25849 87 0 1 639 0 4 828 chain 23534 chr1 249250621 + 84350313 84350566 L1PA3long 6157 + 5904 6157 112939 253 chain 30505 chr1 249250621 + 84354696 84355075 THE1C 375 - 0 375 83418 26 2 1 223 3 0 125 chain 15486 chr1 249250621 + 84369133 84369404 MER2 342 - 0 255 139934 12 21 22 10 7 4 105 10 0 47 3 0 15 0 1 9 2 0 30 chain 130348 chr1 249250621 + 84380883 84382323 L1PA4 6152 + 4698 6141 28006 603 0 2 693 0 1 144 chain 50041 chr1 249250621 + 84449783 84450512 L1PA16 3655 + 2922 3619 58993 60 0 2 211 2 1 5 1 0 90 7 0 98 0 1 25 16 17 145 3 0 15 19 0 11 6 1 15 chain 29033 chr1 249250621 + 84455850 84456157 AluYb8 318 - 11 318 88841 307 chain 5090 chr1 249250621 + 84456157 84456212 L1PA16 3655 - 1876 1931 194179 55 chain 24263 chr1 249250621 + 84472182 84472561 THE1C 375 - 0 375 108885 28 31 12 140 11 9 95 0 14 32 0 5 26 2 0 14 chain 2858 chr1 249250621 + 84478458 84478494 L1MCc 1008 + 286 331 227686 28 0 9 8 chain 31789 chr1 249250621 + 84494982 84495416 MLT2A1 477 + 0 477 81189 121 0 9 39 4 1 9 0 1 23 0 1 181 4 0 8 9 47 14 0 1 22 chain 51573 chr1 249250621 + 84501939 84502791 L1PBa1 4058 - 17 851 57906 24 0 2 17 1 0 19 33 26 11 1 0 17 3 0 6 8 6 18 2 0 12 6 0 9 2 1 5 0 2 9 9 7 106 2 0 43 1 0 28 2 1 7 1 0 14 0 7 10 0 1 75 14 15 108 2 1 227 chain 5941 chr1 249250621 + 84502805 84502883 L1PB 1623 + 1373 1450 185769 73 1 0 4 chain 4888 chr1 249250621 + 84514168 84514225 Tigger3b 1229 - 1121 1178 196395 57 chain 567545 chr1 249250621 + 84518059 84524089 L1HS 6032 - 0 6031 56 5959 0 1 71 chain 41161 chr1 249250621 + 84524096 84524598 HERVH-int 3825 - 1704 3825 67697 100 0 10 256 0 1609 146 chain 56451 chr1 249250621 + 84534247 84535086 L1PB1 5432 - 106 939 54879 18 15 6 6 2 0 14 1 0 46 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 5 0 6 2 5 264 0 1 25 0 1 37 3 0 146 0 2 79 0 17 38 chain 7604 chr1 249250621 + 84537613 84537711 MER4E 760 - 8 108 173519 4 0 1 7 0 2 10 1 0 76 chain 9497 chr1 249250621 + 84571693 84571862 MER2 342 + 164 329 163089 9 3 0 4 2 0 100 26 27 25 chain 9399 chr1 249250621 + 84575801 84576029 MER2 342 + 5 240 163554 14 1 16 16 89 81 108 chain 23223 chr1 249250621 + 84595609 84595897 AluY 311 + 8 307 114575 121 1 2 53 0 10 113 chain 20367 chr1 249250621 + 84645490 84645722 L1PA7 6471 - 10 243 126006 78 0 1 154 chain 18465 chr1 249250621 + 84645753 84646245 L1PB1 5432 + 4990 5424 131597 113 91 64 26 6 0 27 2 1 16 1 0 42 2 1 9 33 20 18 8 5 14 6 4 16 15 14 11 1 0 13 1 0 16 1 0 4 chain 4107 chr1 249250621 + 84649528 84649574 MADE1 96 - 50 96 205820 46 chain 542823 chr1 249250621 + 84694616 84700616 L1PA3long 6157 - 0 6151 2371 1521 0 1 415 0 3 265 1 9 56 0 1 623 0 1 652 0 9 408 1 0 1289 11 139 611 0 1 147 chain 88208 chr1 249250621 + 84706271 84707926 L1PB1 5432 - 10 1341 40296 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 17 6 6 1 0 10 6 5 43 8 7 10 2 1 53 17 11 9 1 0 8 2 1 24 13 11 20 9 9 80 0 3 185 4 9 53 0 1 71 3 14 21 311 0 9 3 0 15 0 4 390 0 1 6 1 0 18 1 0 103 chain 73389 chr1 249250621 + 84752699 84753781 MER11B 1079 + 0 1079 46841 354 27 30 41 12 11 101 0 1 4 6 5 194 10 0 25 1 3 51 5 6 25 18 19 14 4 5 21 7 8 131 2 1 29 chain 3475 chr1 249250621 + 84770065 84770105 MER3 215 - 1 41 215723 40 chain 23779 chr1 249250621 + 84801991 84802346 THE1B 368 - 12 368 111598 24 11 5 24 0 1 8 1 0 25 4 0 77 10 7 13 1 0 113 0 15 44 chain 127841 chr1 249250621 + 84802349 84803910 THE1B-int 1605 - 3 1605 28609 174 0 1 98 1 0 333 0 1 261 0 1 68 2 6 202 0 25 336 0 10 86 chain 22821 chr1 249250621 + 84803929 84804589 THE1B 368 - 20 368 116490 42 1 0 12 1 0 92 2 0 10 334 12 8 1 0 117 0 15 17 0 1 4 1 0 18 chain 21596 chr1 249250621 + 84892610 84892877 AluY 311 + 41 309 121783 82 1 0 9 0 1 74 0 1 101 chain 95178 chr1 249250621 + 84906249 84907319 L1PA4 6152 - 11 1080 38041 247 1 2 591 3 1 228 chain 537882 chr1 249250621 + 84908455 84914923 L1PA7 6471 + 0 6468 3169 320 11 12 72 2 3 614 2 1 371 0 3 705 1 3 83 0 1 288 1 10 154 0 1 131 13 3 89 1 0 237 10 14 543 8 13 1086 1 2 196 3 0 668 5 6 80 0 1 75 35 8 190 0 5 17 0 10 434 1 0 10 2 0 9 chain 3880 chr1 249250621 + 84951353 84951395 L1MC4 1079 - 467 509 209163 42 chain 3639 chr1 249250621 + 85000091 85000183 MIR 256 - 69 157 212973 13 16 13 11 12 10 5 0 1 35 chain 16550 chr1 249250621 + 85008562 85008816 MER44A 345 - 30 307 136797 60 9 0 60 0 10 8 8 0 71 0 5 4 1 0 18 3 29 12 chain 27873 chr1 249250621 + 85023976 85024273 AluYa5 310 - 15 310 93445 169 2 0 126 chain 23210 chr1 249250621 + 85034302 85034701 MSTA 426 + 0 426 114640 84 49 75 46 2 0 9 30 33 30 1 0 18 0 1 130 chain 12549 chr1 249250621 + 85042936 85043250 L1MC1 2226 - 77 355 150044 10 1 0 10 9 0 8 1 0 17 3 1 19 5 0 23 13 16 8 2 0 3 6 0 5 2 0 35 2 0 14 10 8 55 2 1 28 7 1 16 chain 22162 chr1 249250621 + 85051031 85051766 MER61C 433 - 0 405 119537 37 1 0 32 17 18 5 0 1 16 341 29 49 16 0 33 29 27 26 1 0 132 chain 318907 chr1 249250621 + 85055312 85060657 L1PA11 4918 + 8 4629 12636 7 1 0 26 3 1 34 6 3 34 1 0 17 2 0 44 5 4 34 2 0 6 2 1 55 0 5 67 6 11 215 0 2 12 0 4 154 1 0 8 1 0 187 0 25 84 0 1 76 0 4 74 1 0 11 0 4 92 0 4 37 1 2 32 5 6 29 9 13 380 0 1 8 21 9 18 1 36 174 317 17 150 4 9 12 7 6 109 1 5 9 7 5 153 9 7 93 9 5 5 0 3 72 0 1 89 470 0 142 0 1 241 4 0 89 1 0 7 0 1 297 2 0 33 6 9 147 1 0 297 12 1 209 1 15 26 13 14 51 7 6 12 2 0 58 0 8 15 1 0 20 4 0 9 32 22 15 1 0 13 2 0 11 47 33 18 chain 23576 chr1 249250621 + 85077911 85078200 AluSc 308 - 8 299 112703 21 11 13 257 chain 22649 chr1 249250621 + 85079689 85080030 LOR1b 457 - 7 416 117327 25 5 12 73 10 11 107 0 47 8 0 4 8 1 0 7 1 0 68 7 18 21 chain 49053 chr1 249250621 + 85141080 85141763 MER4A 717 + 0 683 59707 135 7 26 300 6 8 23 17 0 25 14 10 156 chain 7990 chr1 249250621 + 85148843 85148958 L1PA8 5853 - 6 151 171117 33 0 32 22 1 0 19 2 1 38 chain 4003 chr1 249250621 + 85168006 85168057 MIR 256 - 40 93 207342 21 0 2 30 chain 8364 chr1 249250621 + 85182972 85183412 L1MA9 1812 + 1361 1737 169050 27 31 27 5 1 0 33 7 6 13 118 95 12 1 0 37 93 61 17 1 0 4 5 6 21 2 0 12 chain 138328 chr1 249250621 + 85193643 85195665 L1PA15 4387 - 74 2099 26431 43 6 3 50 2 1 11 4 0 20 2 1 54 2 1 25 1 0 58 0 1 5 1 0 108 1 0 19 1 0 21 3 1 50 0 1 8 2 0 7 0 2 8 0 2 411 81 85 32 0 2 89 1 0 11 21 19 94 0 1 6 6 9 27 3 5 148 0 3 332 5 8 243 chain 11359 chr1 249250621 + 85245295 85245493 MER30 238 + 0 238 154865 15 3 21 47 0 3 23 4 20 30 1 7 17 10 7 48 chain 7965 chr1 249250621 + 85252454 85252637 L1MB5 1630 + 1427 1606 171248 46 14 19 41 34 33 26 7 0 9 1 0 5 chain 17521 chr1 249250621 + 85254122 85254344 L1PA7 6471 - 1 224 134206 148 9 10 65 chain 8704 chr1 249250621 + 85329995 85330119 MER85 139 - 0 135 167175 23 9 20 92 chain 6245 chr1 249250621 + 85348441 85348511 L1PA5 6144 + 6074 6144 183206 70 chain 57412 chr1 249250621 + 85368365 85369115 LTR12 884 + 0 869 54283 210 0 107 20 0 1 39 2 0 267 16 25 171 0 4 25 chain 20703 chr1 249250621 + 85370683 85370992 L1PA8 5853 + 5549 5853 124958 15 1 0 45 2 0 69 2 1 15 10 11 33 8 7 15 2 1 92 chain 99398 chr1 249250621 + 85374047 85375253 L1PA8A 6298 + 5087 6291 36925 67 7 0 7 0 7 321 2 1 689 1 0 112 chain 12180 chr1 249250621 + 85382207 85382346 MER85 139 + 0 139 151494 139 chain 26398 chr1 249250621 + 85387377 85387721 Tigger4b 360 - 1 360 98418 62 1 0 166 0 11 54 0 5 61 chain 10920 chr1 249250621 + 85392690 85392885 L1PA8 5853 + 5656 5853 156527 22 12 10 52 8 9 13 1 0 47 11 15 29 chain 3427 chr1 249250621 + 85414841 85414882 L1M2c 2366 + 1863 1904 216625 41 chain 25843 chr1 249250621 + 85420624 85420995 THE1C 375 + 0 375 100681 125 18 15 42 3 4 141 4 11 11 1 0 26 chain 288396 chr1 249250621 + 85442692 85447438 L1MA2 4263 + 26 4218 14133 63 0 6 9 30 29 18 1 0 11 2 0 94 2 1 20 4 6 45 0 8 20 3 0 34 0 3 40 0 1 49 1 0 11 0 2 547 0 1 56 0 4 216 1 0 82 5 10 65 0 4 49 0 14 10 0 1 57 1 4 62 0 12 117 487 5 158 1 5 45 1 0 498 2 1 96 13 14 15 2 0 39 0 5 13 5 0 73 0 1 4 7 9 46 0 2 73 1 4 135 19 7 227 0 5 57 9 21 23 0 2 119 3 15 60 10 3 26 5 0 49 1 0 147 3 0 126 6 5 16 11 9 93 7 0 17 0 3 27 1 0 10 203 73 16 4 2 12 chain 32055 chr1 249250621 + 85444427 85444904 MLT2A1 477 - 0 477 80771 13 0 1 23 19 3 11 11 19 21 7 8 173 0 1 24 0 3 8 4 1 83 0 4 66 0 1 14 chain 106507 chr1 249250621 + 85451327 85453737 L1PB1 5432 + 3671 5422 35118 58 13 10 543 303 205 32 0 4 29 0 1 52 0 4 20 2 1 180 0 3 77 0 3 161 606 63 17 1 0 8 3 2 12 2 0 3 2 0 9 4 2 50 2 1 17 1 0 43 1 0 21 20 10 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 2 1 17 chain 11144 chr1 249250621 + 85456010 85456132 L1PA3long 6157 + 6035 6157 155656 122 chain 29446 chr1 249250621 + 85459302 85459612 AluYb8 318 - 8 318 86868 310 chain 123572 chr1 249250621 + 85473029 85474596 THE1B-int 1605 - 0 1605 29849 287 2 10 376 0 1 161 11 12 84 0 1 204 0 1 11 3 28 123 0 1 305 chain 165093 chr1 249250621 + 85475267 85477917 L1PB1 5432 + 3087 5422 22642 11 0 1 273 0 1 5 1 14 269 0 3 63 10 12 223 0 1 347 1 0 125 0 1 192 12 9 160 1 9 60 2 1 31 1 0 4 318 6 186 0 1 8 14 14 21 1 0 6 1 0 12 2 0 3 2 0 9 3 1 44 7 6 11 7 6 60 23 12 18 3 1 5 1 0 14 7 5 10 1 2 7 1 0 22 1 0 12 6 5 13 chain 14567 chr1 249250621 + 85518446 85518676 Tigger3b 1229 + 711 941 142686 47 4 0 7 10 11 27 0 1 9 6 8 120 chain 14255 chr1 249250621 + 85540380 85540598 MER82 654 + 52 262 143701 74 14 17 92 11 0 27 chain 15544 chr1 249250621 + 85542192 85542468 THE1B 368 - 62 368 139752 53 15 14 7 1 0 15 0 7 6 23 23 12 1 0 86 5 28 9 0 3 43 chain 164952 chr1 249250621 + 85564990 85566815 L1PA4 6152 + 4315 6151 22659 16 0 1 19 0 4 283 0 5 1366 0 1 141 chain 26380 chr1 249250621 + 85567123 85567435 AluY 311 + 0 307 98495 17 2 0 112 3 0 178 chain 5422 chr1 249250621 + 85567796 85567889 L1MA4 2864 + 2724 2809 190784 13 11 5 25 2 0 42 chain 69484 chr1 249250621 + 85611817 85612698 L1PA7 6471 - 4 899 48615 144 1 0 7 0 11 7 23 12 118 0 4 12 0 1 74 0 7 27 0 2 320 3 0 21 0 2 74 0 2 50 chain 91689 chr1 249250621 + 85651089 85652099 L1PA3long 6157 - 1602 2621 38980 191 0 4 37 1 2 198 0 2 110 0 2 473 chain 146281 chr1 249250621 + 85652099 85653704 L1PA3long 6157 + 4547 6157 25118 1460 0 1 94 0 4 51 chain 8197 chr1 249250621 + 85699868 85699969 L1PA16 3655 - 2263 2364 169970 101 chain 3227 chr1 249250621 + 85703973 85704011 MER92B 628 - 568 606 220478 38 chain 120763 chr1 249250621 + 85714013 85715583 THE1B-int 1605 - 0 1605 30773 9 1 2 235 4 5 207 26 30 94 7 11 51 1 0 505 1 26 336 1 2 92 chain 16116 chr1 249250621 + 85718703 85718897 MER107 203 - 0 203 138004 25 0 1 8 0 8 161 chain 29820 chr1 249250621 + 85748632 85748950 AluYb8 318 - 2 318 85374 198 2 0 118 chain 5567 chr1 249250621 + 85759071 85759147 MER33 330 + 217 291 189408 40 2 0 34 chain 46878 chr1 249250621 + 85778315 85778881 L1PA7 6471 - 4 573 61328 133 6 14 15 5 0 407 chain 20418 chr1 249250621 + 85799692 85800053 THE1D 372 + 18 372 125844 38 63 55 73 14 16 27 1 0 145 chain 90783 chr1 249250621 + 85812449 85813458 L1PA5 6144 + 5134 6144 39364 855 0 1 154 chain 5956 chr1 249250621 + 85817527 85817636 L1MB3 1562 + 1444 1555 185629 55 25 27 29 chain 25969 chr1 249250621 + 85839011 85839412 THE1D 372 + 0 372 100140 52 15 8 16 15 0 8 4 0 117 9 7 132 1 0 32 chain 4608 chr1 249250621 + 85857698 85857761 L1PB1 5432 - 9 69 199524 19 1 0 13 1 0 21 1 0 7 chain 23533 chr1 249250621 + 85893893 85894257 THE1B 368 - 1 368 112944 127 60 66 5 2 0 127 1 0 42 chain 195555 chr1 249250621 + 85894702 85897033 L1PA7 6471 - 5 2459 19537 9 2 0 643 0 1 98 1 7 91 0 3 131 0 1 13 8 9 17 9 109 22 0 5 633 0 8 654 chain 213182 chr1 249250621 + 85907715 85910178 L1PA5 6144 - 0 2480 18284 11 1 3 832 1 4 248 7 6 5 0 1 546 5 18 704 1 0 102 chain 32002 chr1 249250621 + 85910506 85910947 MLT2A1 477 - 3 477 80862 36 4 0 8 8 46 180 0 1 20 0 1 12 4 1 169 chain 15460 chr1 249250621 + 85913715 85913932 MER30 238 + 0 237 140021 107 4 23 22 1 5 33 3 0 47 chain 5111 chr1 249250621 + 85920329 85920455 MER112 246 - 103 222 193967 18 18 12 17 16 21 7 6 0 44 chain 19913 chr1 249250621 + 85922051 85922296 MER47A 366 + 0 245 127426 245 chain 13628 chr1 249250621 + 85934517 85934684 THE1B 368 - 201 368 145866 167 chain 16250 chr1 249250621 + 85935821 85936188 THE1B 368 - 0 368 137614 56 18 17 55 129 132 4 1 0 104 chain 29847 chr1 249250621 + 85944837 85945155 AluYb8 318 - 0 318 85294 318 chain 524521 chr1 249250621 + 85974034 85980218 L1PA6 6164 + 2 6162 4725 115 1 0 401 0 2 47 1 0 483 0 8 614 12 2 68 2 0 5 0 2 584 0 1 793 0 1 61 0 1 97 0 1 2027 1 0 462 31 0 231 12 16 127 0 2 9 chain 7542 chr1 249250621 + 85985694 85985858 L1PB1 5432 - 40 194 173919 24 4 3 19 2 0 6 8 14 15 17 8 7 3 0 15 1 0 43 chain 3868 chr1 249250621 + 86003087 86003150 L1MA6 2487 + 2343 2402 209328 36 4 1 18 1 0 4 chain 17026 chr1 249250621 + 86041556 86041755 L1PA4 6152 + 5953 6152 135520 199 chain 87147 chr1 249250621 + 86055336 86056904 L1M1 2793 + 775 1989 40712 27 2 1 28 2 0 8 1 0 53 6 4 5 1 0 102 1 0 36 0 10 131 1 0 49 357 3 19 17 7 107 1 2 111 1 4 246 0 4 37 0 1 219 chain 22873 chr1 249250621 + 86055793 86056142 THE1B 368 + 0 368 116218 13 2 0 27 0 5 57 0 1 36 0 4 29 2 1 25 35 45 14 0 2 109 chain 9041 chr1 249250621 + 86058270 86058425 L1MA2 4263 + 3967 4112 165372 61 9 7 23 15 8 39 1 0 7 chain 17280 chr1 249250621 + 86066600 86066929 MER2 342 + 0 322 134836 47 44 40 29 1 3 65 1 0 93 12 7 11 5 6 21 chain 10710 chr1 249250621 + 86091576 86091708 L1PA8A 6298 - 8 165 157372 125 0 25 7 chain 557360 chr1 249250621 + 86107549 86113704 L1PA3long 6157 + 4 6157 573 427 0 1 9 0 4 704 0 2 3009 11 1 6 0 1 1989 chain 48459 chr1 249250621 + 86141065 86141737 Tigger1 2417 - 1085 1773 60145 27 7 6 18 1 14 238 0 4 54 3 5 89 17 12 102 0 3 116 chain 565996 chr1 249250621 + 86214202 86220231 L1HS 6032 + 0 6030 154 2976 0 1 3053 chain 4422 chr1 249250621 + 86229843 86229892 MER20 218 - 72 121 201670 49 chain 55841 chr1 249250621 + 86236793 86237461 L1PA7 6471 - 7 676 55221 145 5 6 518 chain 273345 chr1 249250621 + 86237489 86241196 L1HS 6032 - 8 3649 15000 404 243 91 14 70 152 190 0 1 1340 0 1 440 1 0 349 1 0 5 6 8 628 0 2 16 chain 22169 chr1 249250621 + 86237893 86238136 L1HS 6032 + 5272 5515 84755 243 chain 6386 chr1 249250621 + 86238150 86238220 L1HS 6032 + 5529 5599 84755 70 chain 5021 chr1 249250621 + 86248088 86248146 L1PA4 6152 - 11 69 194915 58 chain 116143 chr1 249250621 + 86254689 86256216 L1PA10 4194 - 44 1582 32400 34 3 0 31 2 0 141 0 4 276 0 1 54 0 8 53 12 12 361 0 1 168 2 0 33 13 12 72 4 5 113 2 1 78 1 2 9 0 4 8 7 6 33 0 1 17 chain 29239 chr1 249250621 + 86279222 86279533 AluYa5 310 - 0 310 87854 184 1 0 126 chain 542203 chr1 249250621 + 86290623 86296626 L1PA3long 6157 - 15 6153 2469 2662 3 5 210 0 3 471 2 1 954 0 1 931 0 128 183 0 1 438 0 1 149 chain 116993 chr1 249250621 + 86297570 86298850 L1PA4 6152 - 961 2242 32129 504 0 1 776 chain 85474 chr1 249250621 + 86298850 86299809 L1PA4 6152 + 5188 6151 41321 110 0 4 849 chain 24517 chr1 249250621 + 86328800 86329096 L1P1 4361 - 20 313 107457 12 3 2 22 1 0 157 1 0 100 chain 96387 chr1 249250621 + 86329096 86330233 L1PA5 6144 + 4995 6139 37705 328 0 4 159 13 10 134 0 1 340 0 7 11 0 1 141 3 0 8 chain 395955 chr1 249250621 + 86335007 86339521 L1PA5 6144 + 1606 6143 10242 739 0 1 1123 0 1 136 0 1 435 1 0 307 0 4 407 0 7 530 1 5 193 3 0 476 0 7 12 0 1 135 4 5 12 chain 24796 chr1 249250621 + 86347878 86348173 AluYc3 301 + 0 298 105914 96 0 1 16 1 2 112 0 1 70 chain 6184 chr1 249250621 + 86367535 86367661 L1MA4A 3247 + 3050 3172 183706 63 39 35 24 chain 460640 chr1 249250621 + 86387115 86392494 L1PA6 6164 + 736 6149 8376 71 0 17 100 0 4 140 0 5 757 1 0 154 1 4 49 1 0 284 5 4 858 1 2 4 0 1 873 1 0 1341 1 0 319 0 7 104 0 1 314 chain 563705 chr1 249250621 + 86392750 86398783 L1HS 6032 + 0 6032 245 257 1 0 5775 chain 36445 chr1 249250621 + 86410283 86410684 L1PA3long 6157 - 0 401 74303 401 chain 9180 chr1 249250621 + 86414379 86414490 L1P3 4156 + 3932 4043 164654 111 chain 31385 chr1 249250621 + 86422632 86423039 L1PA8 5853 + 5427 5853 81845 111 0 25 45 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 12948 chr1 249250621 + 86433347 86433515 MER1B 344 - 82 247 148439 29 3 0 136 chain 31615 chr1 249250621 + 86433515 86433945 MLT2A1 477 + 3 477 81458 139 0 1 25 1 5 80 20 19 113 3 43 49 chain 24748 chr1 249250621 + 86446312 86446613 AluY 311 + 3 296 106182 265 8 0 28 chain 31661 chr1 249250621 + 86457604 86457976 L1PA4 6152 - 9 370 81385 58 13 2 301 chain 15317 chr1 249250621 + 86493979 86494350 THE1D 372 + 0 372 140434 15 4 6 11 1 0 24 38 30 12 9 10 30 1 2 26 74 80 126 chain 49486 chr1 249250621 + 86536686 86537501 L1MA2 4263 + 26 849 59397 26 0 3 20 46 48 38 5 0 4 1 0 86 2 0 41 20 19 18 16 15 140 1 0 24 0 1 29 1 5 130 16 19 50 3 10 85 1 0 12 chain 506485 chr1 249250621 + 86537503 86543675 L1PA7 6471 + 108 6466 6434 294 1 3 293 14 33 93 0 7 356 0 10 200 0 3 261 0 1 26 5 7 199 0 3 393 5 13 323 0 1 11 4 7 32 0 2 64 0 1 369 0 56 123 9 10 37 5 15 172 5 4 298 2 1 847 0 4 237 1 0 74 8 9 82 0 48 352 0 1 138 1 0 95 1 6 590 1 2 9 0 1 56 0 3 76 3 0 7 chain 12820 chr1 249250621 + 86576934 86577203 LTR12C 1709 + 650 877 148979 62 41 0 14 6 47 29 41 0 35 1 0 40 chain 2631 chr1 249250621 + 86577003 86577037 LTR12C 1709 + 837 871 211716 34 chain 36209 chr1 249250621 + 86585531 86585937 L1PA6 6164 + 4710 5116 74617 406 chain 90590 chr1 249250621 + 86585937 86586981 L1PA6 6164 + 5117 6162 39436 758 0 1 286 chain 353493 chr1 249250621 + 86597060 86601106 L1PA4 6152 - 13 4077 11512 98 0 1 53 0 1 479 3 0 955 2 1 52 0 1 13 0 2 6 0 10 124 0 3 296 0 1 11 0 1 341 0 2 179 1 0 343 0 1 1090 chain 25273 chr1 249250621 + 86604075 86604413 THE1B 368 + 0 360 103358 44 0 15 40 1 9 60 5 4 188 chain 62623 chr1 249250621 + 86614042 86614731 L1PA3long 6157 - 8 697 51622 689 chain 537136 chr1 249250621 + 86628043 86634163 L1PA5 6144 - 7 6144 3295 142 0 1 405 0 1 1001 1 2 1076 0 2 74 0 7 268 0 1 1677 1 0 447 1 0 307 1 2 57 1 2 429 4 8 228 chain 206061 chr1 249250621 + 86645998 86648337 L1PA4 6152 - 9 2359 18788 244 1 2 618 0 1 248 0 1 400 1 0 345 1 10 481 chain 3362 chr1 249250621 + 86677012 86677049 MLT1A1 405 + 357 394 217844 37 chain 21870 chr1 249250621 + 86678051 86678325 AluY 311 + 36 310 120749 101 19 19 154 chain 167003 chr1 249250621 + 86680823 86683020 SVA_F 1814 + 10 1814 22394 871 1 0 33 49 0 34 128 15 46 49 0 178 181 0 627 chain 1974 chr1 249250621 + 86681750 86681777 SVA_F 1814 + 937 978 90814 10 1 15 16 chain 9211 chr1 249250621 + 86681811 86681937 SVA_F 1814 + 1012 1138 90814 126 chain 3203 chr1 249250621 + 86681985 86682018 SVA_F 1814 + 1136 1169 173729 33 chain 11461 chr1 249250621 + 86682212 86682342 SVA_F 1814 + 962 1089 136501 38 2 0 11 1 0 78 chain 4273 chr1 249250621 + 86682342 86682392 SVA_F 1814 + 1138 1187 203580 32 1 0 17 chain 5881 chr1 249250621 + 86689566 86689661 MADE1 96 - 3 96 186359 44 13 11 38 chain 252890 chr1 249250621 + 86708217 86710971 L1PA2 6032 + 3271 6026 16087 1058 1 0 183 0 1 1361 0 1 151 chain 26480 chr1 249250621 + 86711851 86712160 AluSp 311 - 2 311 98119 309 chain 30205 chr1 249250621 + 86738319 86738636 AluYb8 318 - 1 318 84181 317 chain 2838 chr1 249250621 + 86740858 86740959 L1M1 2793 - 1014 1120 57453 47 0 4 29 4 5 21 chain 66154 chr1 249250621 + 86740982 86741690 L1HS 6032 + 5323 6032 50023 4 0 1 704 chain 28688 chr1 249250621 + 86741697 86742718 L1M1 2793 - 1325 2232 57453 61 0 1 135 9 0 23 2 0 8 2 0 59 1 0 81 1 3 38 0 1 55 1 0 100 13 10 46 13 8 9 1 0 4 1 0 24 2 0 4 0 1 7 278 191 8 3 0 11 3 2 8 1 0 9 chain 49647 chr1 249250621 + 86763141 86763788 L1PA8 5853 - 0 643 59275 83 0 3 7 1 0 19 3 2 44 0 1 6 2 1 8 2 1 70 2 0 44 1 0 160 12 10 5 0 2 35 2 0 125 0 1 16 chain 213355 chr1 249250621 + 86764887 86767919 L1MA1 4479 - 346 3452 18269 15 0 1 10 2 0 39 8 13 103 3 0 5 1 0 66 6 4 18 1 0 33 1 0 71 1 0 15 3 1 25 1 0 325 3 0 23 0 1 100 4 0 10 23 116 77 4 0 72 0 1 4 2 0 27 1 0 91 7 6 57 1 0 33 0 5 95 2 1 68 19 0 78 1 0 89 1 0 4 1 2 248 5 7 73 1 13 43 0 5 285 0 1 75 0 2 41 0 1 107 7 12 305 0 2 39 31 19 49 3 1 48 0 3 23 chain 416217 chr1 249250621 + 86795933 86800659 L1PA5 6144 + 1409 6142 9635 900 7 0 235 7 22 628 3 4 1423 0 1 848 0 2 358 4 0 167 1 0 145 chain 192101 chr1 249250621 + 86805819 86809169 HERVH48-int 3304 + 136 3245 19859 6 2 0 13 3 0 6 5 2 8 2 0 6 14 10 13 2 0 26 1 0 31 55 35 4 1 0 66 6 2 5 1 0 72 1 0 13 6 0 9 14 8 79 1 0 9 3 1 54 60 32 17 1 0 5 2 0 57 11 9 39 1 0 34 1 0 69 25 17 118 3 0 11 1 0 20 1 0 14 2 0 32 3 0 3 2 0 17 5 3 6 1 0 15 1 0 23 2 0 40 24 15 121 2 1 11 1 0 6 1 0 218 5 4 72 1 4 12 1 0 118 0 6 147 4 0 231 0 3 30 1 0 18 2 0 8 0 4 58 1 0 12 1 0 47 1 0 130 10 11 88 1 0 4 20 18 44 1 0 4 1 0 10 4 2 6 3 0 24 2 0 19 1 0 5 3 0 11 2 0 5 127 93 22 39 32 12 13 5 9 1 0 10 1 3 9 2 0 6 1 0 46 5 2 68 60 44 69 91 65 28 chain 42528 chr1 249250621 + 86810209 86810892 L1PB1 5432 - 151 823 65983 45 6 5 12 1 0 48 37 29 4 1 0 23 45 43 67 0 1 296 2 3 38 1 0 37 1 2 19 chain 149815 chr1 249250621 + 86815789 86817549 L1PA7 6471 - 1 1774 24645 6 2 0 121 0 3 236 0 2 261 0 1 110 1 0 9 0 3 91 0 5 100 0 1 695 0 1 128 chain 6367 chr1 249250621 + 86838362 86838446 L1PB2 3958 + 3753 3836 182264 22 2 1 60 chain 228655 chr1 249250621 + 86855007 86858492 L1PB1 5432 + 2248 5427 17378 76 0 1 5 1 0 158 2 0 63 13 10 16 0 5 86 0 1 66 0 4 102 4 1 212 303 3 20 13 18 506 0 4 6 0 2 118 11 1 102 0 1 183 10 23 305 23 0 259 0 4 18 0 3 75 0 2 98 0 5 226 17 54 13 32 15 20 1 0 5 24 19 6 2 0 52 18 16 41 5 4 10 19 6 28 10 6 15 4 3 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 3376 chr1 249250621 + 86865157 86865195 tRNA-Gly-GGA 38 - 0 38 217568 38 chain 19040 chr1 249250621 + 86875032 86875290 LTR18A 364 - 0 309 130002 112 9 34 58 1 27 78 chain 27531 chr1 249250621 + 86880289 86880662 MLT2A1 477 + 0 403 94573 142 0 1 26 0 4 35 5 4 124 7 33 34 chain 29350 chr1 249250621 + 86882444 86882752 AluYa5 310 - 1 309 87293 308 chain 3218 chr1 249250621 + 86901478 86901537 MER63B 433 + 153 211 220616 29 12 11 18 chain 7323 chr1 249250621 + 86901646 86901835 MER58B 340 + 137 324 175285 30 70 69 36 5 4 48 chain 3156 chr1 249250621 + 86925465 86925498 MER20 218 + 127 160 221807 33 chain 15806 chr1 249250621 + 86933199 86933378 L1P1 4361 + 4150 4328 138939 155 1 0 23 chain 23009 chr1 249250621 + 86939991 86940249 AluY 311 + 36 295 115578 96 0 1 162 chain 213641 chr1 249250621 + 86977589 86980202 HERVL-int 5654 + 3028 5646 18249 52 0 3 147 0 9 231 2 1 885 21 0 64 0 1 38 0 1 442 0 4 225 0 1 94 8 9 70 0 3 6 4 1 183 0 6 27 0 1 114 chain 31910 chr1 249250621 + 86980202 86980635 MLT2A1 477 + 3 477 80995 165 5 2 9 0 1 26 0 1 162 19 61 47 chain 3804 chr1 249250621 + 86989304 86989401 LTR12C 1709 - 672 769 210332 23 37 37 37 chain 36364 chr1 249250621 + 86995236 86995624 L1PA2 6032 - 0 388 74414 388 chain 125770 chr1 249250621 + 87010003 87011617 L1PB1 5432 + 3305 4929 29165 5 0 1 167 1 5 234 0 1 10 2 4 72 1 2 123 0 1 31 0 1 242 0 2 422 3 0 301 chain 224703 chr1 249250621 + 87020830 87024178 L1PA14 3548 - 83 3432 17618 10 6 0 40 1 0 17 1 0 5 1 0 14 17 15 19 1 3 77 3 1 43 1 0 5 0 3 76 1 0 6 2 0 13 2 0 8 2 0 20 6 1 7 0 5 6 1 3 26 1 2 5 1 0 28 10 6 48 2 0 11 5 4 24 1 0 123 0 1 23 5 0 79 1 0 152 2 1 290 18 35 4 0 1 300 0 1 5 1 0 104 50 40 49 1 2 177 7 0 36 5 6 41 9 1 266 4 0 317 0 29 169 5 1 86 0 1 36 17 13 165 23 7 55 4 7 23 2 0 30 22 57 33 11 7 25 chain 11919 chr1 249250621 + 87067603 87067799 L1MA2 4263 - 149 337 152518 5 0 1 4 1 0 28 0 1 17 7 0 83 10 9 8 1 0 32 chain 5862 chr1 249250621 + 87071955 87072034 MADE1 96 + 1 96 186567 43 1 17 35 chain 309146 chr1 249250621 + 87076370 87080243 L1P2 5180 - 1253 5176 13040 1237 0 1 479 0 4 985 14 13 49 0 3 198 0 25 97 3 4 21 4 20 4 1 0 182 0 2 21 1 2 65 20 18 38 0 2 47 0 11 9 28 6 35 6 0 6 9 15 81 1 0 95 7 18 130 chain 57341 chr1 249250621 + 87087287 87087986 LTR30 714 + 0 704 54316 68 0 1 159 6 0 10 1 7 8 0 5 433 1 0 13 chain 75951 chr1 249250621 + 87089361 87090353 L1PB 1623 + 531 1524 45512 267 0 1 215 5 18 273 3 0 48 0 1 92 1 0 7 2 1 30 1 0 4 3 0 13 9 5 7 1 0 11 chain 370346 chr1 249250621 + 87091834 87096171 L1P1 4361 - 33 4359 11083 23 1 0 155 1 0 969 4 3 497 2 1 100 0 1 1872 16 9 124 1 0 572 chain 309723 chr1 249250621 + 87096178 87099753 L1P1 4361 - 751 4357 13015 834 1 0 1048 8 12 650 0 1 142 0 4 220 0 1 85 0 22 587 chain 24704 chr1 249250621 + 87118727 87119034 AluSc5 308 + 4 308 106410 119 6 3 182 chain 512628 chr1 249250621 + 87123129 87129289 L1PA6 6164 + 0 6162 5907 46 20 21 72 3 0 320 7 6 56 15 14 252 0 17 17 17 0 167 0 1 463 1 0 162 1 0 344 1 0 59 3 6 309 1 2 31 0 1 824 0 1 115 2 1 1630 1 2 257 0 1 488 1 5 313 2 1 92 2 0 66 chain 9953 chr1 249250621 + 87132877 87133009 L1M1 2793 + 2466 2601 160813 13 0 3 20 0 1 4 1 0 94 chain 172672 chr1 249250621 + 87137794 87139708 L1PA3long 6157 + 4233 6155 21746 778 0 5 156 1 0 135 1 5 843 chain 2918 chr1 249250621 + 87141829 87141986 MLT1F 544 + 381 537 226724 27 110 109 20 chain 567251 chr1 249250621 + 87144763 87150794 L1HS 6032 - 0 6031 77 6031 chain 17065 chr1 249250621 + 87152683 87152881 L1PA5 6144 + 5946 6144 135411 198 chain 90144 chr1 249250621 + 87159243 87160557 HUERS-P3b-int 2065 - 13 1290 39597 13 35 8 59 0 2 29 1 0 57 4 0 51 19 18 14 2 0 72 7 5 87 1 0 23 1 0 13 0 1 79 12 10 40 1 0 81 1 2 166 1 2 18 0 2 350 24 22 53 chain 40537 chr1 249250621 + 87163675 87164402 L1PB1 5432 - 10 709 68538 17 2 1 12 1 0 22 1 0 18 74 56 16 14 13 31 1 0 15 2 1 52 2 0 9 5 1 12 1 0 8 1 0 23 5 0 6 8 13 280 0 4 6 0 2 6 8 6 69 chain 2756 chr1 249250621 + 87235205 87235234 MLT2B3 573 - 13 42 229387 29 chain 4644 chr1 249250621 + 87238010 87238069 L1MA4 2864 - 61 118 199127 36 2 0 21 chain 21707 chr1 249250621 + 87248948 87249219 AluY 311 + 16 294 121363 116 0 1 5 7 13 143 chain 13907 chr1 249250621 + 87252405 87252588 MSTB 430 + 0 187 144891 152 5 9 26 chain 22687 chr1 249250621 + 87262012 87262305 AluSp 311 - 17 311 117135 14 5 7 145 1 0 128 chain 21445 chr1 249250621 + 87262712 87262975 AluSq10 312 + 25 287 122350 108 2 1 153 chain 53908 chr1 249250621 + 87267300 87268001 LTR12D 1347 - 0 942 56423 104 5 38 114 0 97 186 0 6 23 8 0 39 0 41 112 4 76 106 chain 378115 chr1 249250621 + 87269458 87274887 HERV9-int 5642 - 817 5642 10811 108 0 1 726 0 3 380 0 8 1951 864 332 209 4 0 18 82 1 297 9 8 324 1 0 160 0 3 296 chain 47916 chr1 249250621 + 87272630 87273245 LTR12D 1347 + 456 1347 60545 46 8 174 12 0 18 13 5 0 267 0 97 264 chain 14941 chr1 249250621 + 87273306 87273487 HERV9-int 5642 + 0 181 141259 181 chain 52407 chr1 249250621 + 87274957 87275603 LTR12D 1347 - 8 945 57349 139 0 200 245 0 2 36 1 18 132 0 72 93 chain 311755 chr1 249250621 + 87279475 87283067 L1P1 4361 + 2 3948 12936 293 0 1 35 8 5 228 0 1 41 0 4 159 0 15 240 1 0 2491 20 357 76 chain 33264 chr1 249250621 + 87283067 87283481 L1P1 4361 - 3764 4176 78663 32 0 1 19 0 1 14 4 0 193 7 6 38 0 1 107 chain 236574 chr1 249250621 + 87283497 87286154 L1PA4 6152 + 3477 6143 16947 39 1 7 2475 3 6 139 chain 24267 chr1 249250621 + 87308732 87309017 AluSp 311 - 26 311 108863 285 chain 60770 chr1 249250621 + 87309179 87309989 MER4E1 777 - 7 777 52439 222 53 12 186 1 0 42 0 1 64 1 2 241 chain 6167 chr1 249250621 + 87313554 87313649 MLT1B 390 + 9 94 183822 14 11 0 9 0 1 61 chain 10178 chr1 249250621 + 87317848 87317974 MSTA 426 - 0 131 159728 62 0 5 64 chain 25407 chr1 249250621 + 87325190 87325486 AluSq10 312 + 8 304 102651 296 chain 5175 chr1 249250621 + 87330826 87330889 L1MC2 1988 + 916 979 193285 63 chain 161216 chr1 249250621 + 87364475 87366320 SVA_D 2077 - 7 2070 23162 305 1 0 320 1 225 133 0 1 48 2 4 52 0 38 27 2 1 26 40 0 865 5 0 18 chain 11583 chr1 249250621 + 87389389 87389546 THE1B 368 - 196 368 153960 108 5 20 44 chain 118331 chr1 249250621 + 87389546 87391082 THE1B-int 1605 - 0 1590 31679 63 0 1 135 0 15 219 2 0 220 1 2 176 0 1 4 1 0 14 2 3 104 0 1 5 10 8 76 0 1 106 0 25 250 0 14 23 1 0 124 chain 4086 chr1 249250621 + 87412832 87412976 LTR40a 516 - 365 511 206136 19 9 7 12 18 19 16 35 38 35 chain 130426 chr1 249250621 + 87428838 87430348 SVA_C 1631 - 0 1615 27982 7 3 0 341 0 3 181 6 5 51 5 0 25 1 0 33 1 0 70 0 29 31 0 40 273 0 37 448 0 6 30 0 1 4 chain 8575 chr1 249250621 + 87453925 87454025 HERVK11-int 2540 + 2135 2235 167880 100 chain 50815 chr1 249250621 + 87455264 87455883 L1PA7 6471 - 10 632 58423 133 8 0 12 2 10 169 0 1 29 0 2 266 chain 4777 chr1 249250621 + 87464547 87464669 MER5A1 166 + 41 161 197618 33 35 30 14 6 9 34 chain 40017 chr1 249250621 + 87501519 87502063 L1PA7 6471 - 14 578 69298 48 5 4 28 8 0 8 0 8 132 0 8 14 1 3 16 0 3 59 5 12 124 3 4 93 chain 23656 chr1 249250621 + 87523280 87523561 AluY 311 + 28 303 112272 104 0 1 162 7 0 8 chain 173972 chr1 249250621 + 87532259 87534329 L1PA7 6471 - 1 2089 21596 154 0 1 108 1 3 67 0 1 88 31 30 394 0 3 288 1 2 254 0 1 29 0 1 256 2 3 113 0 8 284 chain 21172 chr1 249250621 + 87547412 87547682 AluSc 308 + 24 308 123296 94 1 0 22 5 18 105 0 2 43 chain 2993 chr1 249250621 + 87590416 87590451 Tigger4b 360 - 0 35 225199 35 chain 35519 chr1 249250621 + 87698002 87698493 MLT2A1 477 - 0 477 75531 46 6 0 11 13 1 246 1 5 25 0 1 50 1 0 92 chain 19634 chr1 249250621 + 87703412 87703631 AluSp 311 - 18 237 128301 219 chain 38999 chr1 249250621 + 87724092 87724869 L1PB2 3958 - 120 709 70747 63 1 0 22 2 0 71 2 1 64 1 0 57 193 23 16 7 8 62 11 7 5 2 0 55 12 7 16 1 0 53 2 0 59 chain 29737 chr1 249250621 + 87738592 87738905 AluYb8 318 + 0 313 85705 313 chain 2978 chr1 249250621 + 87746046 87746205 MIRb 242 + 7 175 225478 18 83 94 24 15 13 19 chain 13634 chr1 249250621 + 87763400 87763561 THE1B 368 - 207 368 145840 161 chain 2994 chr1 249250621 + 87778912 87778946 MLT1L 557 - 369 403 225129 34 chain 210514 chr1 249250621 + 87830313 87832777 L1PA7 6471 - 37 2508 18469 630 3 2 178 6 0 118 0 3 582 1 2 353 0 9 575 0 1 18 chain 25000 chr1 249250621 + 87837552 87837830 AluYf4 310 - 4 280 104788 42 2 0 234 chain 199689 chr1 249250621 + 87841512 87844461 L1PREC2 3366 - 302 3227 19231 5 1 0 11 2 0 38 6 4 35 22 8 11 4 1 20 1 0 9 3 1 15 7 2 16 31 23 12 10 6 41 1 0 54 4 2 171 0 4 56 0 4 128 1 0 367 0 1 99 9 33 102 0 1 186 1 0 44 10 4 64 22 23 45 6 9 93 0 1 4 3 0 400 36 42 93 1 4 100 1 0 4 0 1 39 0 2 133 0 2 20 2 1 65 5 0 113 2 1 33 1 0 4 1 0 9 39 36 7 1 0 3 4 0 19 6 0 6 8 11 24 chain 11301 chr1 249250621 + 87871337 87871620 THE1B 368 + 70 368 155057 35 130 145 118 chain 9082 chr1 249250621 + 87888408 87888512 THE1B 368 - 257 361 165153 104 chain 44327 chr1 249250621 + 87896572 87897140 LTR12_ 688 + 13 688 63791 12 1 0 117 1 2 210 0 103 154 0 4 73 chain 9889 chr1 249250621 + 87911718 87911870 MLT1B 390 + 230 379 161127 41 16 17 60 4 0 31 chain 6861 chr1 249250621 + 87918966 87919049 5S 121 - 31 114 178487 83 chain 41210 chr1 249250621 + 87919202 87919861 MER50B 698 - 0 685 67638 163 1 0 8 0 9 3 9 0 218 119 146 138 chain 28951 chr1 249250621 + 87923455 87923762 AluYa5 310 - 3 310 89213 307 chain 3209 chr1 249250621 + 87934245 87934283 MER2B 336 + 245 283 220752 38 chain 6743 chr1 249250621 + 87946028 87946118 LTR40a 516 + 5 94 179371 63 1 0 26 chain 9978 chr1 249250621 + 87950105 87950247 L1MA1 4479 - 323 459 160686 5 1 0 9 1 0 33 3 0 31 1 0 58 chain 6709 chr1 249250621 + 87994645 87994744 LTR12D 1347 - 571 837 179619 65 9 176 25 chain 32322 chr1 249250621 + 87996754 87997184 MER1A 529 + 99 528 80322 355 19 18 56 chain 63926 chr1 249250621 + 88014250 88014962 L1PA4 6152 - 0 712 51041 712 chain 7259 chr1 249250621 + 88020893 88021029 L1PA15 4387 - 21 146 175716 10 1 0 28 19 12 46 6 3 26 chain 4089 chr1 249250621 + 88033509 88033574 MER47A 366 - 3 69 206093 15 6 7 44 chain 3240 chr1 249250621 + 88033585 88033622 Tigger5 388 + 329 366 220230 37 chain 2748 chr1 249250621 + 88070659 88070692 L1MA7 2200 - 117 150 229506 33 chain 5158 chr1 249250621 + 88101439 88101503 LTR12C 1709 - 991 1055 193469 64 chain 10624 chr1 249250621 + 88101537 88101823 LTR12C 1709 - 692 936 157715 32 12 90 58 120 0 64 chain 99374 chr1 249250621 + 88133704 88134841 L1PA5 6144 + 4991 6131 36937 561 2 0 288 8 13 278 chain 4883 chr1 249250621 + 88159121 88159189 MER41A 554 + 397 466 196451 33 1 2 34 chain 29490 chr1 249250621 + 88171002 88171524 MER1A 529 + 0 529 86667 17 6 25 38 14 17 97 1 13 8 12 0 155 18 0 52 50 53 54 chain 24981 chr1 249250621 + 88190112 88190386 AluY 311 + 22 296 104901 274 chain 22965 chr1 249250621 + 88198380 88198735 THE1D 372 + 0 357 115783 135 6 10 29 1 0 19 1 0 30 10 5 10 13 19 83 1 0 17 chain 25260 chr1 249250621 + 88198736 88199015 L1PA3long 6157 + 5879 6157 103419 136 1 0 142 chain 4498 chr1 249250621 + 88288871 88288998 MER53 195 + 39 168 200804 28 57 59 42 chain 67252 chr1 249250621 + 88303778 88304518 L1PA4 6152 + 5412 6152 49542 740 chain 29457 chr1 249250621 + 88312437 88312850 MLT2A1 477 + 0 407 86817 17 0 4 148 4 1 8 3 1 204 5 2 8 1 0 7 1 0 7 chain 28587 chr1 249250621 + 88336283 88336599 AluYb8 318 + 0 303 90801 296 13 0 7 chain 29077 chr1 249250621 + 88354624 88354929 AluYa5 310 - 5 310 88657 305 chain 29375 chr1 249250621 + 88360814 88361119 AluYb8 318 - 13 318 87188 305 chain 5225 chr1 249250621 + 88388476 88388555 MADE1 96 + 0 96 192772 31 6 23 42 chain 25388 chr1 249250621 + 88401404 88401715 AluY 311 + 0 299 102746 129 4 0 150 8 0 20 chain 3640 chr1 249250621 + 88433240 88433283 MER53 195 + 122 165 212963 43 chain 23275 chr1 249250621 + 88460155 88460539 THE1C 375 + 0 373 114320 7 0 1 55 31 23 122 3 0 5 31 30 130 chain 119604 chr1 249250621 + 88490839 88492400 THE1B-int 1605 - 14 1604 31180 136 0 8 423 14 14 331 1 0 146 5 6 46 7 5 19 0 25 160 1 3 144 10 3 6 0 3 112 chain 15155 chr1 249250621 + 88503778 88504039 THE1C 375 + 111 375 140898 74 42 47 51 9 11 57 5 1 23 chain 16685 chr1 249250621 + 88505019 88505354 L1PREC2 3366 + 180 521 136450 13 43 39 12 2 1 12 2 0 21 18 17 49 5 24 36 1 0 54 4 1 9 1 0 53 chain 29674 chr1 249250621 + 88534484 88534863 THE1C 375 + 0 375 85924 236 3 0 114 1 0 25 chain 321712 chr1 249250621 + 88549480 88553311 L1PA8A 6298 - 6 3861 12532 722 0 2 77 0 3 134 0 1 511 10 18 945 1 2 396 1 0 30 0 4 47 0 1 21 0 3 772 0 1 100 0 1 64 chain 22126 chr1 249250621 + 88589026 88589332 AluY 311 + 1 303 119677 125 0 1 19 24 28 115 9 0 14 chain 29162 chr1 249250621 + 88618416 88618795 L1PA7 6471 - 823 1288 87848 18 0 7 50 3 0 149 16 94 133 0 4 10 chain 68064 chr1 249250621 + 88618795 88619588 L1PA7 6471 + 5664 6464 49217 5 0 1 419 1 0 4 0 7 364 chain 104536 chr1 249250621 + 88678030 88679166 L1PA3long 6157 + 5014 6149 35612 293 1 0 842 chain 64209 chr1 249250621 + 88700778 88701535 L1PA7 6471 - 19 777 50911 121 3 0 94 0 4 539 chain 212271 chr1 249250621 + 88706618 88709601 L1PA7 6471 + 3824 6459 18342 12 1 0 203 8 9 4 1 0 310 0 1 176 2 1 24 350 0 254 0 4 133 4 2 304 0 1 4 1 0 355 1 0 76 0 2 34 0 1 541 50 49 135 chain 10399 chr1 249250621 + 88731286 88731411 L1MA3 4352 + 3960 4086 158699 17 0 1 108 chain 26549 chr1 249250621 + 88744833 88745188 THE1B 368 - 0 350 97844 75 1 0 23 1 0 4 0 1 72 4 0 24 1 0 121 0 1 29 chain 45087 chr1 249250621 + 88775213 88775725 MER9a1 513 - 0 513 62957 499 0 1 13 chain 555042 chr1 249250621 + 88807525 88813550 L1PA2 6032 + 3 6027 821 5176 1 0 848 chain 80011 chr1 249250621 + 88827068 88828160 L1PB2 3958 - 120 1194 43587 62 8 14 81 1 0 64 1 0 79 1 0 28 10 0 58 3 0 13 2 0 63 3 0 13 1 0 55 2 0 119 0 2 6 2 0 224 8 9 24 1 0 160 chain 3458 chr1 249250621 + 88831111 88831153 MLT1E2 623 + 580 623 216026 5 0 1 37 chain 116362 chr1 249250621 + 88858766 88860446 L1PB1 5432 + 3795 5424 32322 168 0 7 197 0 4 152 6 7 57 0 3 89 14 19 123 0 1 382 15 16 83 46 7 4 1 0 24 1 0 9 16 11 11 2 0 43 10 9 16 1 0 44 1 0 14 3 0 8 15 5 19 16 13 6 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4456 chr1 249250621 + 88862889 88863020 MER3 215 - 5 163 201275 38 70 97 23 chain 252458 chr1 249250621 + 88900440 88904278 L1MA1 4479 + 228 4151 16103 15 1 2 4 1 0 31 2 0 79 0 1 153 5 6 53 0 1 109 0 3 58 8 9 17 0 1 38 0 2 38 1 5 121 4 13 110 0 53 82 1 3 67 5 8 220 1 0 154 0 1 97 0 1 20 0 1 94 8 9 104 6 7 4 1 0 68 6 4 52 40 44 266 1 0 62 0 3 81 1 0 65 2 9 18 0 1 20 9 17 39 2 0 33 1 0 68 10 9 49 0 1 27 1 0 19 10 8 158 0 3 9 3 1 15 19 15 65 1 0 12 4 0 125 3 1 115 10 9 59 1 0 89 0 1 4 103 99 59 0 10 10 3 1 14 1 0 62 34 31 102 26 30 23 2 0 35 1 0 9 chain 3825 chr1 249250621 + 88929820 88929863 MER65A 464 + 0 43 210004 43 chain 13615 chr1 249250621 + 88933222 88933390 LTR12C 1709 + 932 1147 145918 139 0 47 29 chain 4281 chr1 249250621 + 88933486 88933536 LTR12C 1709 + 676 726 203470 50 chain 5167 chr1 249250621 + 88933542 88933606 LTR12C 1709 + 654 718 193384 64 chain 1428 chr1 249250621 + 89050354 89050614 L1MA3 4352 + 45 306 90062 111 1 0 19 1 0 7 3 13 38 8 1 72 chain 298177 chr1 249250621 + 89050633 89054458 L1PA8 5853 + 1990 5853 13521 27 6 1 754 13 14 96 1 0 115 2 1 963 5 59 27 7 11 26 19 0 82 1 0 355 5 17 91 0 1 35 0 1 288 1 2 54 2 0 554 2 1 43 2 0 62 10 9 13 1 0 48 2 1 17 13 12 83 chain 1620 chr1 249250621 + 89055297 89055592 L1MA3 4352 + 845 1132 90062 30 1 0 18 6 1 186 2 1 13 2 1 6 0 1 7 1 0 23 chain 3822 chr1 249250621 + 89062069 89062112 MLT2A2 560 + 517 560 210064 43 chain 454412 chr1 249250621 + 89062112 89068010 HERVL-int 5654 + 0 5654 8599 129 0 5 218 8 0 772 3 1 47 303 0 192 16 17 774 4 1 99 0 2 269 0 3 29 0 16 137 2 1 222 1 0 4 5 6 613 0 1 123 4 15 34 7 8 355 0 1 177 5 6 90 0 4 361 0 1 131 0 18 30 7 1 34 4 8 86 12 2 316 0 19 121 0 1 154 chain 15142 chr1 249250621 + 89082810 89083168 L1MB3 1562 + 1225 1555 140936 88 7 8 29 4 3 65 103 76 25 9 8 28 chain 119509 chr1 249250621 + 89086450 89088228 L1PREC2 3366 + 159 2045 31214 11 1 0 9 3 1 20 23 17 15 1 0 15 15 11 8 0 2 18 21 0 59 3 11 49 1 0 31 8 18 14 1 0 79 10 134 229 13 12 14 4 5 130 4 0 151 0 1 40 11 12 22 20 21 180 0 1 142 0 1 403 chain 4386 chr1 249250621 + 89102715 89102768 MLT2B1 522 - 469 522 202134 53 chain 5893 chr1 249250621 + 89107605 89107675 MLT2B4 540 - 468 538 186250 70 chain 25557 chr1 249250621 + 89129969 89130258 AluYc 301 - 12 301 101944 289 chain 4075 chr1 249250621 + 89130471 89130526 MADE2 80 + 26 79 206264 28 2 0 25 chain 3530 chr1 249250621 + 89141258 89141302 MLT1J 494 + 101 145 214874 44 chain 13248 chr1 249250621 + 89157404 89157646 MER44A 345 + 1 251 147296 20 1 16 47 5 0 16 1 0 4 14 7 15 0 2 21 0 2 35 5 8 48 1 0 9 chain 19630 chr1 249250621 + 89160581 89160822 AluYc 301 + 43 284 128310 39 7 5 27 0 2 168 chain 480264 chr1 249250621 + 89178466 89184122 L1PA6 6164 - 5 5654 7723 165 1 2 343 1 0 57 5 4 273 1 0 282 3 0 644 0 8 79 0 2 626 5 11 341 29 0 49 0 3 80 0 1 218 4 6 51 2 1 1482 5 8 815 0 2 51 0 1 44 chain 39324 chr1 249250621 + 89186337 89187046 L1PB1 5432 - 14 684 70292 14 1 0 12 1 0 22 1 0 26 2 0 12 1 0 10 1 0 14 29 16 11 1 0 24 0 1 20 1 0 15 2 1 49 22 15 12 3 2 4 1 0 15 42 44 63 0 2 35 2 0 173 0 1 6 3 2 21 10 0 28 chain 5154 chr1 249250621 + 89194364 89194428 L1MC3 1789 + 812 876 193505 48 1 0 4 0 1 11 chain 8940 chr1 249250621 + 89233147 89233309 Tigger3c 601 - 54 245 165927 48 15 0 13 3 5 10 6 38 57 0 10 10 chain 5919 chr1 249250621 + 89233898 89234215 MLT1D 503 - 19 352 185995 54 38 47 19 9 8 11 159 167 27 chain 29146 chr1 249250621 + 89236260 89236567 AluYa5 310 - 3 310 88332 307 chain 22420 chr1 249250621 + 89242151 89242438 AluSz 310 + 11 295 118374 270 4 1 13 chain 208582 chr1 249250621 + 89282568 89285825 L1PA7 6471 + 3794 6459 18598 442 405 0 38 0 2 74 0 80 194 0 1 24 1 4 16 6 14 272 319 0 24 0 2 198 1 0 290 0 5 148 0 2 47 0 5 9 0 4 294 4 10 168 0 1 63 8 12 65 0 11 139 1 0 7 chain 7124 chr1 249250621 + 89305824 89305978 Tigger4 2445 - 421 575 176588 23 11 4 48 2 38 8 29 0 33 chain 23684 chr1 249250621 + 89349706 89349995 AluSg7 307 - 5 294 112133 133 1 0 42 0 1 113 chain 3192 chr1 249250621 + 89363822 89363877 MLT2A1 477 + 422 477 221083 8 2 0 7 2 4 36 chain 463894 chr1 249250621 + 89363877 89369792 HERVL-int 5654 + 0 5654 8263 104 0 1 4 1 0 66 0 13 16 1 2 211 302 0 61 0 3 66 0 3 256 5 3 515 1 0 114 1 2 520 3 1 36 1 0 73 0 9 344 3 2 95 0 1 246 0 8 562 0 4 703 0 5 35 1 0 1293 1 0 23 1 2 32 0 1 219 chain 30430 chr1 249250621 + 89369792 89370406 MLT2A1 477 + 0 477 83577 85 0 3 54 0 1 25 5 9 84 0 2 59 2 1 62 197 51 41 chain 41674 chr1 249250621 + 89390211 89390705 LTR17 781 + 255 772 67064 72 0 1 390 1 23 31 chain 379345 chr1 249250621 + 89392615 89396941 HERV17-int 4347 + 12 4347 10776 15 1 0 52 1 0 25 2 3 6 3 0 26 1 0 771 0 3 532 0 9 23 2 0 80 0 1 938 1 2 187 0 1 624 0 1 185 2 1 246 6 7 29 1 0 378 0 1 189 chain 23562 chr1 249250621 + 89397255 89397553 LTR17 781 + 0 306 112785 119 0 9 61 5 4 113 chain 4159 chr1 249250621 + 89421455 89421507 MER5A 189 + 85 136 205114 46 1 0 5 chain 14679 chr1 249250621 + 89421751 89422035 MER82 654 + 250 625 142332 127 47 95 28 9 11 14 6 47 53 chain 48576 chr1 249250621 + 89440283 89440953 LTR12 884 + 0 869 60054 24 1 0 166 3 93 53 1 2 37 3 1 126 5 4 63 10 114 65 0 8 113 chain 36370 chr1 249250621 + 89470449 89470917 LTR2 463 + 0 463 74399 210 27 22 231 chain 73475 chr1 249250621 + 89483785 89484641 MER11D 897 + 0 897 46799 264 1 18 214 0 1 96 1 24 280 chain 21321 chr1 249250621 + 89484985 89485248 AluSp 311 - 24 289 122793 23 1 3 239 chain 6708 chr1 249250621 + 89485932 89486036 HY1 111 - 2 99 179622 15 4 0 15 4 0 22 0 1 44 chain 487523 chr1 249250621 + 89494216 89500000 L1PA6 6164 - 11 5795 7455 630 0 1 132 0 4 26 17 10 431 10 0 600 1 0 871 0 1 257 0 1 46 0 2 775 0 2 636 0 1 11 0 1 759 26 0 405 0 32 54 7 6 90 chain 39972 chr1 249250621 + 89501790 89502238 L1PA3long 6157 - 0 449 69361 142 0 1 306 chain 72607 chr1 249250621 + 89532545 89533506 LTR5_Hs 974 - 0 974 47213 103 20 18 19 8 15 163 6 5 183 0 1 177 0 1 122 1 0 39 5 13 115 chain 451958 chr1 249250621 + 89537980 89543671 L1PA8 5853 + 111 5847 8699 86 4 0 104 19 7 58 0 16 26 1 9 116 0 1 75 0 1 7 0 4 41 4 1 119 1 4 280 7 9 111 0 2 100 0 11 879 1 25 470 6 0 231 0 1 9 1 0 102 6 1 559 0 13 53 0 1 15 1 2 304 1 0 259 8 4 252 0 1 59 0 1 466 4 1 230 0 1 326 1 0 43 3 1 69 14 11 15 0 1 33 5 4 19 1 0 87 chain 84088 chr1 249250621 + 89545371 89546407 MER11B 1079 + 0 1064 41861 220 0 5 91 1 18 432 5 8 43 8 9 53 0 1 72 0 1 111 chain 3808 chr1 249250621 + 89546735 89546777 L1MB2 1706 - 20 62 210252 42 chain 8070 chr1 249250621 + 89556893 89556983 L1PA8 5853 - 0 90 170648 90 chain 27415 chr1 249250621 + 89563357 89563716 THE1B 368 + 0 368 94920 15 2 0 22 0 5 130 2 1 83 0 8 29 1 0 75 chain 23883 chr1 249250621 + 89574578 89574866 AluSp 311 - 12 300 111003 288 chain 24210 chr1 249250621 + 89575997 89576531 L1PB1 5432 + 4942 5430 109152 152 10 12 8 31 0 24 1 0 4 38 31 47 2 1 11 24 18 31 1 0 15 21 13 17 3 1 5 1 0 7 0 18 13 1 0 22 1 0 12 1 0 14 2 0 5 3 0 7 chain 130628 chr1 249250621 + 89592701 89594292 LTR12C 1709 - 0 1709 27938 333 0 2 146 0 4 107 2 0 6 1 0 145 3 40 16 7 88 559 0 1 12 4 0 250 chain 122723 chr1 249250621 + 89604767 89606134 L1PA4 6152 + 4779 6152 30152 519 0 4 523 0 1 71 0 1 254 chain 470217 chr1 249250621 + 89620507 89626051 L1PA5 6144 + 604 6141 8025 384 2 3 178 9 0 668 0 4 468 1 0 4 6 4 324 0 3 514 1 0 199 1 2 55 0 1 87 4 0 172 3 0 245 0 1 156 0 1 551 2 0 29 0 1 327 0 1 301 1 0 59 0 1 211 0 1 582 chain 100849 chr1 249250621 + 89627796 89629280 L1PA13 3608 - 86 1570 36548 4 1 0 16 6 1 10 8 6 19 1 0 15 12 15 40 24 14 13 3 0 7 1 0 26 1 0 63 2 0 113 1 0 16 4 19 677 0 1 32 3 1 134 0 1 38 4 2 7 4 0 93 4 4 36 20 35 26 chain 26395 chr1 249250621 + 89631278 89631607 L1PA7 6471 + 6137 6464 98430 178 0 1 141 3 0 7 chain 19588 chr1 249250621 + 89645241 89645558 MER51B 395 + 0 395 128413 28 19 38 25 6 62 56 1 0 4 1 2 30 1 0 88 1 5 57 chain 24558 chr1 249250621 + 89646802 89647190 LTR7 482 - 12 482 107203 37 13 14 53 0 1 4 8 7 48 0 1 13 15 46 21 0 1 73 0 50 48 2 0 53 chain 26318 chr1 249250621 + 89648164 89648442 AluYg6 310 - 12 290 98751 278 chain 12182 chr1 249250621 + 89648447 89648612 LTR2B 499 - 317 499 151485 58 0 19 31 3 0 59 0 1 14 chain 37261 chr1 249250621 + 89671561 89671977 L1PA4 6152 + 5715 6135 73155 368 0 4 48 chain 61912 chr1 249250621 + 89681799 89682600 L1PA8A 6298 - 9 807 51938 106 1 0 175 0 5 73 0 1 18 14 1 268 9 12 60 0 2 77 chain 54028 chr1 249250621 + 89684336 89685039 LTR12 884 - 0 884 56342 90 1 0 12 0 11 86 8 115 128 2 0 65 2 0 54 0 67 65 0 1 190 chain 36670 chr1 249250621 + 89685431 89685906 LTR15 485 - 10 485 74000 15 0 9 7 17 2 45 3 2 55 0 1 52 0 4 132 0 2 149 chain 460526 chr1 249250621 + 89690430 89696601 L1PA6 6164 - 2 6164 8383 356 1 3 400 458 0 815 0 2 115 0 12 33 15 1 122 0 405 199 4 1 183 15 42 283 0 1 4 1 0 61 0 1 52 0 1 272 0 2 467 1 0 5 10 5 349 0 11 38 1 3 4 1 0 103 0 2 800 4 6 229 1 0 115 5 9 594 13 14 42 chain 33942 chr1 249250621 + 89691195 89691645 L1P1 4361 - 317 756 77064 54 9 1 305 0 1 4 5 1 73 chain 271057 chr1 249250621 + 89697430 89701102 L1PA10 4194 - 44 3784 15137 34 21 18 259 10 0 39 0 4 312 7 21 27 0 5 25 0 8 60 24 27 206 0 5 141 1 2 53 13 15 71 10 7 39 0 30 118 0 2 5 2 0 6 0 1 188 3 4 51 1 4 573 0 1 6 0 1 249 0 1 165 1 0 96 11 11 85 0 4 625 1 0 4 6 7 8 0 3 30 8 6 78 chain 7478 chr1 249250621 + 89707868 89707971 L1PA14 3548 - 2935 3036 174287 5 2 0 96 chain 94465 chr1 249250621 + 89709186 89710309 L1PA6 6164 - 5 1133 38218 6 0 1 736 0 5 91 1 0 289 chain 274337 chr1 249250621 + 89710637 89713833 L1P2 5180 + 1817 4999 14960 1194 0 1 123 21 0 380 0 2 444 0 1 354 0 1 87 0 2 235 1 0 28 5 6 324 chain 24002 chr1 249250621 + 89719500 89719815 AluY 311 + 0 311 110320 123 10 5 148 0 1 34 chain 22655 chr1 249250621 + 89731166 89731434 AluY 311 + 37 306 117300 95 0 1 173 chain 15119 chr1 249250621 + 89738732 89738959 LTR12C 1709 - 628 936 140992 12 14 14 132 5 86 64 chain 110393 chr1 249250621 + 89749461 89750891 THE1B-int 1605 + 131 1594 34096 189 0 1 32 0 1 7 18 17 52 1 26 678 2 6 424 0 1 11 2 4 14 chain 18801 chr1 249250621 + 89750901 89751153 THE1B 368 + 0 264 130676 23 1 0 16 0 15 85 1 0 22 2 1 102 chain 12488 chr1 249250621 + 89765771 89765923 L1PA8 5853 + 5410 5563 150301 106 1 2 45 chain 3943 chr1 249250621 + 89765924 89765968 L1PA8 5853 + 5563 5607 208226 44 chain 5864 chr1 249250621 + 89765971 89766041 L1PA8 5853 + 5608 5678 186552 70 chain 12755 chr1 249250621 + 89766060 89766227 L1PA8 5853 + 5688 5853 149233 52 2 1 19 2 1 92 chain 6137 chr1 249250621 + 89768054 89768300 LTR12C 1709 - 973 1059 184107 64 161 1 21 chain 90010 chr1 249250621 + 89780291 89781592 MER61-int 3695 - 1597 2881 39646 71 8 7 352 0 1 75 33 29 128 0 1 14 2 0 74 6 5 64 5 2 33 23 15 131 4 3 144 0 2 29 0 1 54 10 8 41 chain 527982 chr1 249250621 + 89790851 89797264 L1PA4 6152 + 21 6140 4405 106 0 14 640 1 0 381 0 3 1148 1 0 257 0 1 260 313 0 462 5 3 393 1 0 33 0 1 801 0 1 110 1 0 669 1 5 10 0 1 820 chain 26062 chr1 249250621 + 89801631 89801980 THE1A 353 + 0 353 99784 94 0 4 7 7 6 25 0 1 216 chain 122428 chr1 249250621 + 89801980 89803556 THE1A-int 1579 + 0 1570 30243 224 10 1 48 0 1 215 0 1 7 1 0 158 0 1 675 1 0 26 10 11 10 4 5 18 10 10 159 chain 17129 chr1 249250621 + 89803565 89803777 THE1A 353 + 0 212 135236 212 chain 15433 chr1 249250621 + 89809655 89809974 HUERS-P2-int 2744 + 2446 2742 140097 65 2 0 29 5 0 8 3 0 7 0 2 22 46 41 36 3 0 33 1 0 5 6 4 5 2 0 12 2 0 27 chain 280988 chr1 249250621 + 89810726 89814334 HERVL-int 5654 + 1943 5654 14585 58 4 1 5 0 3 191 1 0 85 0 8 17 8 9 51 0 1 414 7 101 262 0 7 496 0 3 57 24 10 64 0 1 119 11 9 51 0 2 386 6 8 712 1 8 353 8 6 109 4 0 104 chain 30279 chr1 249250621 + 89818592 89818933 L1PA3long 6157 - 2 347 83999 53 0 4 288 chain 63665 chr1 249250621 + 89818934 89819648 L1P1 4361 + 3185 3899 51163 714 chain 13092 chr1 249250621 + 89830411 89830671 L1PA8 5853 - 58 285 147875 35 1 0 19 2 1 52 1 0 9 50 22 35 19 17 37 chain 234320 chr1 249250621 + 89836757 89839378 L1PA5 6144 + 3519 6138 17078 158 3 0 950 0 1 1510 chain 24247 chr1 249250621 + 89839426 89839792 THE1C 375 + 4 370 108959 100 10 11 61 25 22 104 0 4 44 3 1 19 chain 104678 chr1 249250621 + 89854558 89855722 L1PA3long 6157 - 392 1565 35570 451 0 4 146 0 5 567 chain 11838 chr1 249250621 + 89862639 89862851 L1MA2 4263 - 205 415 152875 83 19 17 24 30 30 56 chain 489802 chr1 249250621 + 89864769 89871510 L1PA7 6471 - 19 6466 7378 142 6 7 36 1 2 644 1 0 192 0 1 8 0 1 90 0 1 85 0 5 29 0 1 389 1 2 553 1 2 84 3 7 60 1 13 241 0 1 303 0 4 155 304 0 542 0 1 219 6 1 134 0 1 583 0 11 213 7 9 38 13 11 231 0 3 158 0 4 83 1 3 71 2 1 81 0 16 57 20 4 77 0 1 124 58 61 193 46 51 67 1 0 19 0 2 22 19 18 20 6 22 112 64 0 125 chain 4528 chr1 249250621 + 89871322 89871377 L1PA7 6471 - 6343 6398 200467 55 chain 38219 chr1 249250621 + 89875037 89875643 LTR76 689 + 0 677 71815 21 9 5 10 0 11 93 0 20 71 3 4 154 2 0 8 1 0 54 0 31 67 2 1 32 19 37 18 25 23 17 chain 549482 chr1 249250621 + 89878146 89884174 L1PA2 6032 - 8 6032 1520 3118 0 1 970 18 16 99 1 0 706 1 0 803 1 0 311 chain 384724 chr1 249250621 + 89902917 89908795 HERVL-int 5654 - 778 5654 10619 501 1130 6 60 0 99 589 0 2 818 0 1 19 0 7 1078 11 14 71 4 8 260 2 6 869 0 1 409 3 4 54 chain 89341 chr1 249250621 + 89903424 89904543 MER11A 1151 + 0 1151 39868 83 5 0 93 8 0 23 2 0 5 0 1 4 1 0 85 0 2 92 0 1 64 0 1 84 0 1 16 5 4 125 0 1 65 0 9 44 1 0 15 7 41 292 chain 10036 chr1 249250621 + 89909243 89909379 L1M1 2793 - 219 348 160397 113 7 0 16 chain 123535 chr1 249250621 + 89945777 89947338 THE1B-int 1605 - 6 1605 29865 84 0 1 282 7 9 80 10 11 662 5 7 6 0 25 78 0 1 81 0 5 242 0 1 24 chain 9029 chr1 249250621 + 89947356 89947642 THE1B 368 - 18 368 165446 33 155 219 98 chain 14144 chr1 249250621 + 89956369 89956540 THE1B-int 1605 - 7 179 144059 40 0 1 131 chain 552657 chr1 249250621 + 89956547 89962692 L1PA3long 6157 + 5 6157 1116 1910 0 8 1220 0 1 118 0 1 419 4 1 2474 chain 24532 chr1 249250621 + 89974197 89974458 AluYb8 318 + 51 312 107368 261 chain 35108 chr1 249250621 + 89975515 89975917 L1PA5 6144 - 2 404 76038 402 chain 103970 chr1 249250621 + 89986608 89987778 L1PA4 6152 + 4624 5817 35738 256 6 4 398 0 4 470 0 21 40 chain 28180 chr1 249250621 + 89987779 89988111 L1PA4 6152 + 5819 6152 92375 324 0 1 8 chain 28351 chr1 249250621 + 89996954 89997384 LTR49 580 - 158 580 91758 60 9 1 87 8 9 86 20 14 31 1 2 56 1 5 71 chain 138801 chr1 249250621 + 90025948 90027457 L1PA2 6032 - 2 1513 26353 12 0 2 1497 chain 49007 chr1 249250621 + 90037346 90038082 L1PA13 3608 - 2110 3390 59744 6 0 4 65 6 0 25 0 1 160 0 1 40 3 565 99 1 0 15 26 22 14 1 0 18 8 2 16 2 0 17 1 0 12 1 0 127 2 0 71 chain 17942 chr1 249250621 + 90105693 90105910 AluSg4 309 - 81 298 132998 217 chain 193943 chr1 249250621 + 90128382 90131001 L1PA7 6471 - 2 2313 19685 8 2 0 133 1 0 4 0 1 310 305 0 219 0 1 93 0 2 74 1 3 115 29 10 604 1 0 212 0 4 99 0 10 409 chain 6853 chr1 249250621 + 90131876 90131953 L1PA4 6152 + 6044 6121 178550 77 chain 24204 chr1 249250621 + 90147471 90147746 AluY 311 + 17 293 109185 115 0 1 160 chain 28810 chr1 249250621 + 90150657 90150973 AluYb8 318 - 2 318 89841 52 3 0 165 0 3 96 chain 70583 chr1 249250621 + 90170219 90170992 L1PA3long 6157 + 5384 6157 48123 773 chain 559904 chr1 249250621 + 90212585 90218612 L1PA2 6032 - 0 6030 362 2900 2 1 2025 0 1 144 0 3 956 chain 4931 chr1 249250621 + 90242283 90242344 L1MB4 1306 - 531 592 195914 61 chain 70472 chr1 249250621 + 90242360 90243138 L1PA3long 6157 - 0 778 48179 778 chain 5368 chr1 249250621 + 90250064 90250126 LTR16A 446 - 155 217 191336 62 chain 101388 chr1 249250621 + 90261030 90262169 L1PA6 6164 - 8 1147 36424 1139 chain 87968 chr1 249250621 + 90262784 90263822 SVA_D 2077 - 21 1476 40388 643 22 31 18 0 1 8 1 0 6 12 21 13 0 1 27 0 396 139 1 3 148 chain 3937 chr1 249250621 + 90283932 90283978 MLT1A0 366 + 298 344 208317 46 chain 45849 chr1 249250621 + 90334814 90335388 L1P2 5180 + 1261 1864 62180 111 1 28 380 0 2 82 chain 25112 chr1 249250621 + 90379743 90380070 LTR12C 1709 - 0 1697 104219 49 10 1380 268 chain 22026 chr1 249250621 + 90426079 90426326 L1P1 4361 - 358 605 119329 247 chain 100499 chr1 249250621 + 90426326 90427417 L1PA3long 6157 + 5057 6147 36629 250 1 0 840 chain 102698 chr1 249250621 + 90449445 90450741 LTR12C 1709 - 0 1709 36076 168 0 102 211 11 4 106 1 158 123 1 0 35 0 119 67 8 6 141 4 5 83 0 43 40 0 1 4 5 9 6 4 0 278 chain 8727 chr1 249250621 + 90517544 90517666 MER75 514 + 383 507 167051 99 7 9 16 chain 543201 chr1 249250621 + 90522851 90528866 L1PA3long 6157 - 5 6153 2313 1908 0 1 437 0 1 667 0 1 2233 8 136 403 0 1 211 0 1 148 chain 30965 chr1 249250621 + 90529833 90530198 L1PA7 6471 + 6101 6466 82570 51 0 1 161 1 0 152 chain 31337 chr1 249250621 + 90542660 90543028 L1PA7 6471 + 6095 6464 81915 124 0 1 244 chain 68193 chr1 249250621 + 90545574 90546343 L1PA4 6152 + 5377 6152 49161 661 0 1 102 0 5 6 chain 149302 chr1 249250621 + 90562112 90563784 L1PA4 6152 + 4470 6141 24714 195 1 0 1476 chain 19651 chr1 249250621 + 90578124 90578354 L1PA6 6164 + 5924 6159 128244 51 0 5 179 chain 79592 chr1 249250621 + 90585703 90586940 L1MA1 4479 - 317 1516 43785 11 1 0 9 1 0 26 0 3 8 2 0 27 5 4 119 46 40 56 1 0 13 2 0 20 1 0 71 1 0 16 2 0 24 1 0 197 2 1 128 7 4 74 10 5 43 5 0 12 1 0 73 4 0 21 9 7 89 0 1 69 8 6 22 chain 4341 chr1 249250621 + 90587835 90587889 MER53 195 - 33 87 202706 54 chain 4509 chr1 249250621 + 90603696 90603772 L1MB3 1562 + 660 729 200683 41 13 6 22 chain 138728 chr1 249250621 + 90616072 90618386 L1PB1 5432 - 10 1988 26362 18 1 0 13 1 0 21 1 0 19 3 0 5 2 0 14 1 0 5 3 1 11 1 0 7 24 12 16 1 0 42 2 1 16 2 1 52 2 0 9 6 2 13 1 0 6 1 0 24 3 0 9 1 2 157 6 18 219 12 11 76 6 7 104 8 7 10 6 7 8 0 4 354 319 0 122 3 4 259 5 8 284 chain 36874 chr1 249250621 + 90618768 90619239 THE1C-int 1605 - 6 478 73691 65 20 22 112 1 0 273 chain 543469 chr1 249250621 + 90632411 90638545 L1PA5 6144 + 5 6142 2270 233 4 3 628 0 1 1069 1 0 1006 0 1 110 0 1 932 0 1 1304 5 6 842 chain 456799 chr1 249250621 + 90680286 90685400 L1PA3long 6157 - 1 6155 8518 5 0 2 1184 0 1 1518 0 3 1329 4 904 301 0 128 66 0 7 11 7 0 129 1 5 198 0 1 211 0 1 150 chain 114352 chr1 249250621 + 90690416 90692077 THE1B-int 1605 + 54 1605 32980 213 7 13 121 0 64 246 1 0 456 9 11 64 0 2 53 20 17 219 180 0 72 chain 29371 chr1 249250621 + 90697860 90698174 AluYb8 318 - 4 318 87200 314 chain 441982 chr1 249250621 + 90713143 90719006 L1PA7 6471 + 903 6457 8997 138 6 27 48 18 1 240 1 0 4 0 1 200 5 7 704 0 1 75 5 4 287 0 1 303 7 5 129 1 0 4 5 6 132 0 1 7 1 0 130 1 2 125 5 1 516 2 0 330 0 1 138 4 3 194 0 4 179 0 1 441 0 1 320 0 3 26 2 3 63 0 1 69 5 0 361 303 0 157 8 16 9 8 0 20 12 0 115 chain 3348 chr1 249250621 + 90724379 90724428 MER5B 177 + 0 52 218083 24 1 3 13 0 1 11 chain 26883 chr1 249250621 + 90730514 90730946 L1PA15 4387 + 3908 4327 96695 24 1 0 102 0 1 69 1 0 25 2 1 40 23 22 15 4 0 9 2 1 50 6 3 46 2 0 11 chain 32328 chr1 249250621 + 90736036 90736409 L1PA5 6144 - 12 386 80303 229 0 1 144 chain 44696 chr1 249250621 + 90781793 90782324 L1PA8 5853 - 475 1004 63383 369 0 2 36 4 0 122 chain 37435 chr1 249250621 + 90782324 90782821 L1PA8 5853 + 5361 5853 72916 57 0 1 101 0 1 43 1 0 44 2 0 70 2 1 9 8 7 45 2 1 19 4 3 90 chain 38412 chr1 249250621 + 90794649 90795180 MLT2A2 560 + 0 545 71560 28 0 5 150 33 30 188 0 12 132 chain 3090 chr1 249250621 + 90821098 90821171 MIR 256 + 104 180 223089 22 26 29 25 chain 9810 chr1 249250621 + 90857183 90857363 MER30 238 - 0 196 161543 39 3 0 32 0 6 8 8 2 13 11 0 8 5 35 53 chain 5556 chr1 249250621 + 90896883 90896951 L1PB1 5432 - 2176 2244 188677 68 chain 152327 chr1 249250621 + 90896951 90899157 L1PB1 5432 + 3259 5424 24297 142 3 1 334 2 1 254 13 14 46 0 1 87 6 1 25 5 3 283 0 3 92 1 0 80 7 0 81 0 1 54 5 6 336 10 5 5 1 0 24 1 0 9 82 78 12 8 7 36 1 0 16 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 15 7 10 9 1 0 16 1 0 4 chain 15897 chr1 249250621 + 90936709 90936960 MER44A 345 - 1 262 138667 67 25 24 39 0 1 23 3 0 5 0 5 76 0 8 13 chain 400053 chr1 249250621 + 90954619 90960022 L1PB1 5432 - 12 5413 10094 19 1 0 10 1 0 21 1 0 26 22 17 18 25 13 15 1 0 43 8 7 10 2 1 31 0 5 14 3 1 11 6 2 9 1 0 13 8 7 13 3 0 7 3 4 279 0 3 6 4 3 70 1 3 16 10 11 4 0 1 43 0 1 42 13 16 107 32 37 293 0 4 132 0 3 107 1 0 4 8 9 186 9 0 778 0 1 100 12 11 7 1 0 187 6 42 105 1 0 334 0 1 52 0 3 165 0 1 68 4 0 263 0 1 183 26 14 5 2 0 7 1 0 59 0 1 361 3 4 13 1 0 403 0 2 7 16 0 203 0 1 82 1 4 201 0 1 34 chain 32977 chr1 249250621 + 90989454 90990057 L1PREC2 3366 + 2478 3040 79252 232 0 1 4 1 0 37 2 0 47 9 8 43 1 0 4 3 0 13 55 42 12 0 7 6 30 18 10 23 9 38 3 1 30 chain 257598 chr1 249250621 + 91018929 91022873 L1PA5 6144 + 2250 6144 15838 1094 0 1 72 0 2 351 0 1 166 989 938 400 0 4 196 0 4 473 13 1 144 0 1 46 chain 88098 chr1 249250621 + 91020613 91021601 L1PA5 6144 - 1271 2259 40238 988 chain 26747 chr1 249250621 + 91048618 91048974 THE1A 353 + 0 353 97174 111 1 0 34 2 0 5 0 2 42 1 0 69 1 0 90 chain 19110 chr1 249250621 + 91054970 91055312 THE1A 353 - 12 345 129792 69 7 47 87 68 19 9 1 0 83 0 1 18 chain 5805 chr1 249250621 + 91055321 91055525 L1MDb 1215 + 948 1129 187089 32 70 65 31 3 0 12 10 1 13 0 3 5 9 0 19 chain 14711 chr1 249250621 + 91059787 91060037 L1PA17 2846 + 22 258 142235 5 1 0 8 1 0 47 29 17 34 8 9 8 1 0 108 chain 314503 chr1 249250621 + 91063723 91067554 L1PA7 6471 + 2612 6470 12828 28 0 1 223 3 1 24 6 10 64 0 6 92 0 1 34 0 3 121 1 0 4 0 1 276 1 0 335 1 0 90 0 1 46 0 1 117 2 3 1140 0 1 388 0 5 81 0 1 128 4 7 227 3 4 34 6 10 17 1 0 180 1 0 153 chain 90195 chr1 249250621 + 91083284 91084886 HSMAR1 1287 - 0 1280 39576 155 21 22 48 3 2 107 379 37 178 1 0 115 0 1 45 26 29 130 0 14 134 15 18 245 chain 118519 chr1 249250621 + 91100182 91101910 L1PA7 6471 - 6 1405 31612 6 3 0 142 1 0 8 1 2 446 8 0 237 2 0 407 316 0 151 chain 39894 chr1 249250621 + 91101910 91102360 L1PA7 6471 + 4613 5063 68823 450 chain 25086 chr1 249250621 + 91109438 91109761 AluSp 311 - 6 311 104371 128 1 0 51 18 1 125 chain 28552 chr1 249250621 + 91120117 91120580 L1PA15 4387 + 3923 4365 90948 10 1 0 166 6 5 21 1 0 6 1 0 54 1 0 23 16 11 46 8 5 44 3 1 12 6 1 28 1 0 9 chain 17123 chr1 249250621 + 91123306 91123521 U3 216 + 0 216 135250 176 0 1 39 chain 28599 chr1 249250621 + 91151363 91151671 AluYa5 310 - 4 310 90740 180 1 0 33 1 0 93 chain 104344 chr1 249250621 + 91232472 91233788 L1PA10 4194 - 33 1316 35656 11 1 0 34 4 1 511 11 0 324 1 0 150 5 0 55 13 12 4 0 1 95 12 0 85 chain 74599 chr1 249250621 + 91237592 91238504 L1PA6 6164 + 5212 6154 46210 283 0 15 149 0 2 259 0 14 59 28 27 134 chain 20450 chr1 249250621 + 91283990 91284341 THE1B 368 + 0 357 125758 108 8 9 52 50 48 15 3 11 63 9 8 43 chain 27950 chr1 249250621 + 91326412 91326765 THE1A 353 - 0 353 93165 242 2 1 87 0 1 22 chain 128837 chr1 249250621 + 91326765 91328337 THE1A-int 1579 - 0 1579 28351 10 0 1 132 0 2 284 0 1 107 0 3 156 3 4 118 7 5 178 5 6 572 chain 29580 chr1 249250621 + 91333478 91333902 L1PA8 5853 + 5434 5853 86272 7 0 1 51 3 7 64 1 0 44 2 0 71 1 0 14 1 0 42 10 6 19 2 1 92 chain 11110 chr1 249250621 + 91337689 91337904 MER57F 435 + 17 238 155774 86 65 66 29 0 5 35 chain 32746 chr1 249250621 + 91347166 91347583 MLT2A1 477 - 1 475 79620 34 0 53 108 1 0 107 1 5 27 1 2 138 chain 119361 chr1 249250621 + 91356742 91358115 SVA_D 2077 - 15 2077 31277 301 1 0 219 1 0 83 5 543 13 1 0 138 0 40 47 0 79 209 0 3 321 2 36 14 2 0 16 chain 4937 chr1 249250621 + 91367852 91367913 Charlie1a 1436 - 1039 1100 195859 61 chain 3444 chr1 249250621 + 91430969 91431019 MLT1B 390 - 255 306 216294 21 1 2 28 chain 4225 chr1 249250621 + 91450371 91450418 MLT1B 390 + 307 354 204230 47 chain 4781 chr1 249250621 + 91461490 91461542 MLT1A0 366 + 278 330 197569 52 chain 534963 chr1 249250621 + 91463134 91469253 L1PA5 6144 + 0 6144 3596 120 0 14 82 4 0 573 0 1 106 1 0 88 4 1 269 0 1 152 0 5 296 0 1 229 0 1 16 5 9 1101 6 11 94 1 0 1172 0 8 937 1 0 744 1 0 104 4 0 9 chain 31226 chr1 249250621 + 91505433 91505820 MLT2A1 477 + 0 399 82115 6 0 1 135 0 1 19 0 11 151 2 1 74 chain 372189 chr1 249250621 + 91506146 91511373 HERVL-int 5654 + 0 5654 11018 20 2 0 567 1 0 91 0 1 52 0 1 163 9 2 22 3 0 5 14 16 136 1 0 48 1 0 3 568 0 312 14 2 149 6 728 392 1 0 519 6 7 405 23 0 9 0 2 535 12 315 50 0 3 299 0 2 232 0 1 137 4 5 224 3 5 13 6 10 56 5 6 109 chain 32339 chr1 249250621 + 91511373 91511802 MLT2A1 477 + 0 477 80287 142 0 1 26 8 12 143 1 0 56 1 5 13 0 40 39 chain 97465 chr1 249250621 + 91521337 91522525 HERVL-int 5654 - 0 1195 37436 422 8 7 231 0 5 84 0 3 443 chain 25345 chr1 249250621 + 91528940 91529296 THE1A 353 + 0 353 102984 91 1 0 18 23 22 70 1 0 152 chain 65751 chr1 249250621 + 91550601 91551904 HUERS-P1-int 2401 + 148 1268 50215 4 1 0 14 9 4 31 9 0 4 48 0 26 1 0 12 4 0 34 4 0 14 15 12 10 44 20 12 5 1 9 15 0 4 9 0 13 1 0 13 1 0 43 3 0 8 5 4 33 1 0 8 2 0 23 18 0 26 7 4 14 10 1 16 9 6 24 2 1 96 6 0 15 14 17 97 3 0 6 4 3 175 1 0 14 1 0 7 2 0 48 2 1 19 1 2 26 3 1 9 1 0 28 3 0 64 11 15 29 chain 27649 chr1 249250621 + 91560642 91560953 AluSp 311 - 1 311 94210 40 1 0 270 chain 3108 chr1 249250621 + 91561709 91561762 L1ME1 1623 - 361 415 222772 26 8 9 19 chain 5671 chr1 249250621 + 91565018 91565083 MER41C 542 - 0 65 188384 65 chain 40169 chr1 249250621 + 91565117 91565644 MER41A 554 - 25 554 69079 80 1 0 30 7 11 134 2 0 84 9 10 180 chain 199869 chr1 249250621 + 91573045 91575256 L1PA5 6144 - 14 2228 19221 643 0 2 191 1 0 945 0 2 431 chain 4641 chr1 249250621 + 91578784 91578837 L1MA3 4352 + 3427 3480 199163 53 chain 164413 chr1 249250621 + 91596520 91598530 L1P3 4156 + 0 2045 22759 219 0 10 22 1 0 68 2 1 337 3 4 14 23 47 93 0 1 10 1 2 1217 chain 25190 chr1 249250621 + 91598548 91598843 L1PA7 6471 + 6175 6470 103796 295 chain 96310 chr1 249250621 + 91609528 91610764 HSMAR1 1287 - 0 1287 37728 339 0 4 6 8 17 41 11 12 106 0 5 21 0 1 515 1 31 57 0 1 131 chain 29364 chr1 249250621 + 91623138 91623540 MLT2A1 477 - 0 477 87229 19 1 0 34 3 39 60 3 24 96 0 1 28 0 8 25 0 1 109 0 5 7 0 4 17 chain 25889 chr1 249250621 + 91624787 91625058 AluYa5 310 + 36 307 100486 271 chain 9957 chr1 249250621 + 91625499 91625623 MER50 708 - 22 146 160794 124 chain 118160 chr1 249250621 + 91644688 91646042 HERV17-int 4347 + 2978 4332 31743 72 4 0 501 0 3 27 0 1 199 0 1 144 1 0 406 chain 28987 chr1 249250621 + 91646372 91646698 LTR17 781 + 0 326 89051 326 chain 523212 chr1 249250621 + 91648251 91654636 L1PA7 6471 - 6 6471 4848 6 2 0 515 0 1 85 6 10 22 12 8 202 0 2 85 4 0 24 8 9 155 1 0 655 0 12 151 0 6 418 0 1 88 0 2 173 1 0 163 0 1 92 0 5 141 10 7 754 1 0 20 27 11 597 1 2 7 1 0 8 0 1 99 0 1 143 7 18 133 0 2 90 5 44 769 4 5 66 0 1 60 0 1 190 0 1 263 0 19 121 chain 4995 chr1 249250621 + 91669522 91669591 LTR56 451 + 6 71 195195 6 3 0 53 1 0 6 chain 5234 chr1 249250621 + 91671948 91672087 MER51B 395 + 0 108 192693 39 8 27 30 50 0 12 chain 28988 chr1 249250621 + 91672087 91672489 LTR10F 562 - 0 525 89048 59 0 3 37 7 5 83 0 3 91 9 15 13 0 108 64 1 6 38 chain 184207 chr1 249250621 + 91673080 91675371 Harlequin-int 5206 - 2736 5045 20569 210 1 0 140 0 4 172 2 0 594 1 2 40 0 2 16 2 0 98 0 3 327 0 1 44 18 14 117 0 4 111 0 3 83 2 0 196 0 3 5 8 12 4 0 1 95 0 3 5 chain 499173 chr1 249250621 + 91677144 91682504 L1PA2 6032 + 672 6032 6885 5360 chain 9689 chr1 249250621 + 91692695 91692815 LTR8 732 - 0 120 162146 120 chain 37773 chr1 249250621 + 91707414 91708402 LTR2 463 - 0 456 72455 44 535 0 361 0 3 48 chain 11876 chr1 249250621 + 91707473 91707600 L1PA2 6032 - 435 562 152715 127 chain 34683 chr1 249250621 + 91707600 91707992 L1PA2 6032 + 5646 6031 76647 313 7 0 52 0 1 6 1 0 13 chain 362483 chr1 249250621 + 91712144 91716209 L1PA5 6144 - 1 4090 11304 661 0 1 186 0 4 657 0 5 278 0 4 456 0 3 167 0 1 468 0 5 235 0 1 957 chain 87125 chr1 249250621 + 91721634 91723173 L1PREC2 3366 + 268 1578 40729 23 2 1 9 3 0 78 0 1 24 13 15 49 1 0 567 8 9 25 8 7 32 9 13 23 18 17 22 0 68 59 8 12 16 0 1 76 303 0 163 chain 5843 chr1 249250621 + 91727183 91727279 HY3 101 + 2 100 186741 57 14 16 25 chain 7908 chr1 249250621 + 91751789 91752125 MLT1C 463 - 0 328 171593 85 214 208 6 2 0 29 chain 539701 chr1 249250621 + 91752206 91759765 L1PA3long 6157 + 2 6156 2864 774 0 128 46 4 0 118 0 2 766 1536 0 235 1 0 1812 0 1 1299 0 1 120 0 4 848 chain 129697 chr1 249250621 + 91753935 91755406 SVA_B 1603 - 0 1554 28156 297 0 2 288 0 82 69 1 0 13 1 0 693 0 1 109 chain 538529 chr1 249250621 + 91762363 91768484 L1PA4 6152 + 1 6141 3065 1155 0 3 449 0 1 337 1 0 439 0 3 9 0 2 784 1 0 30 3 5 1140 0 2 793 0 5 166 3 0 605 0 1 72 1 0 126 0 6 7 chain 25236 chr1 249250621 + 91776105 91776463 THE1A 353 + 0 353 103557 105 6 5 92 1 0 32 13 11 34 1 0 74 chain 127506 chr1 249250621 + 91776463 91778325 THE1A-int 1579 + 0 1579 28688 25 1 0 375 10 11 40 282 0 227 0 1 101 6 4 795 chain 233560 chr1 249250621 + 91793021 91798871 L1MA2 4263 + 751 4112 17113 79 0 3 163 0 2 77 0 11 343 0 4 50 1 0 51 2058 18 190 58 60 51 28 26 90 3 2 40 1 2 156 0 11 81 0 12 4 0 1 12 3 4 153 8 9 85 12 16 101 0 1 73 489 0 167 3 4 253 6 8 71 1 0 158 1 6 185 6 2 76 1 0 133 14 11 150 12 9 40 0 1 52 20 14 33 1 0 7 chain 332568 chr1 249250621 + 91824646 91829175 L1PA11 4918 + 8 4578 12108 7 1 0 27 2 0 37 3 0 36 1 0 4 0 3 6 9 7 10 0 6 11 1 0 19 1 0 32 2 0 5 2 1 35 6 5 206 24 7 61 12 14 198 1 2 27 1 2 184 1 0 17 4 10 51 0 69 76 1 0 113 0 2 272 0 1 242 4 1 381 2 1 18 12 6 209 1 0 4 0 1 231 0 1 247 0 9 274 0 1 469 1 0 27 11 23 13 0 1 45 4 9 400 11 5 23 0 1 115 6 0 59 22 20 67 3 1 13 1 0 21 61 45 13 2 0 11 chain 533739 chr1 249250621 + 91832194 91838293 L1PA4 6152 + 2 6143 3736 140 11 25 542 1 4 429 0 2 272 0 5 525 1 0 927 0 6 76 6 8 79 1 2 394 0 1 1714 0 5 669 0 1 166 0 1 78 1 3 67 chain 31547 chr1 249250621 + 91853147 91853486 L1HS 6032 + 5693 6032 81571 339 chain 190041 chr1 249250621 + 91856108 91858308 L1PA6 6164 + 3949 6159 20041 413 0 4 666 0 1 157 0 1 29 0 5 90 1 0 439 0 1 248 2 1 11 0 2 137 2 0 5 chain 16140 chr1 249250621 + 91872729 91872921 L1PA6 6164 + 5970 6162 137933 192 chain 469989 chr1 249250621 + 91887934 91893861 L1PA8 5853 - 0 5803 8037 93 1 0 19 2 1 50 3 2 6 1 0 72 2 0 48 1 0 188 0 3 85 9 11 97 23 24 70 0 2 73 2 0 675 0 1 462 0 1 485 3 0 171 1 0 332 1 0 37 0 5 286 3 6 54 44 0 136 18 6 68 6 10 366 0 2 305 21 0 377 6 19 50 0 1 5 1 0 482 3 9 9 6 0 106 0 1 233 0 4 70 44 5 122 46 13 13 1 0 11 3 1 20 chain 519010 chr1 249250621 + 91907378 91913829 L1PA6 6164 + 0 6151 5269 184 11 12 271 1 0 162 0 1 181 17 0 34 1 2 92 6 7 127 1 2 883 1 0 367 17 0 148 0 1 194 5 6 515 0 1 339 0 1 526 0 1 1257 0 5 87 311 0 480 7 11 37 0 1 157 0 27 32 chain 41280 chr1 249250621 + 91914108 91914550 L1HS 6032 + 5589 6031 67558 442 chain 27854 chr1 249250621 + 91926229 91926617 MLT2A1 477 - 92 475 93512 105 3 2 108 4 1 36 7 6 125 chain 458123 chr1 249250621 + 91926619 91934227 HERVL-int 5654 - 0 5654 8469 222 0 7 52 0 1 468 12 10 465 7 16 36 17 12 665 23 22 439 9 10 45 0 10 252 3 0 10 0 1 734 0 17 169 1 0 161 0 3 8 2 0 109 314 0 97 1 3 91 0 5 502 0 2 114 1 0 319 872 0 37 28 4 376 491 8 30 304 0 122 chain 75800 chr1 249250621 + 91931972 91932839 MER11D 897 + 0 897 45595 92 0 6 476 0 23 51 0 1 248 chain 26405 chr1 249250621 + 91934491 91934870 MLT2A1 477 - 101 477 98393 36 10 7 159 9 6 68 9 12 88 chain 4158 chr1 249250621 + 91935000 91935103 MLT1A1 405 + 300 405 205127 27 42 44 34 chain 91823 chr1 249250621 + 91949374 91950448 MER11C 1089 - 16 1089 39020 146 8 7 920 chain 3193 chr1 249250621 + 91951218 91951252 LTR5 62 + 4 38 221051 34 chain 30085 chr1 249250621 + 92039299 92039752 LTR7B 505 - 7 505 84540 44 14 13 79 1 0 43 0 1 38 0 2 7 34 3 16 4 28 11 0 38 60 0 10 15 0 3 87 chain 2953 chr1 249250621 + 92048104 92048140 MLT1L 557 - 358 394 226017 36 chain 91347 chr1 249250621 + 92072997 92074270 L1PB1 5432 - 5 1240 39177 5 2 0 18 1 0 13 6 5 16 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 1 0 44 1 0 15 2 1 53 17 11 9 1 0 9 1 0 24 1 0 5 7 6 463 14 12 436 chain 25098 chr1 249250621 + 92080606 92080899 AluSc5 308 - 15 308 104307 293 chain 31187 chr1 249250621 + 92092754 92093203 LTR7B 505 + 0 490 82186 108 0 10 65 13 75 22 29 0 85 1 0 76 14 13 36 chain 14387 chr1 249250621 + 92106833 92106994 THE1A-int 1579 + 1412 1574 143247 83 0 1 78 chain 5219 chr1 249250621 + 92107622 92107681 THE1A 353 + 293 352 192836 59 chain 38346 chr1 249250621 + 92128007 92128468 LTR2 463 - 0 463 71656 88 12 13 187 0 1 174 chain 418483 chr1 249250621 + 92128468 92133543 Harlequin-int 5206 - 0 5081 9574 144 0 1 862 37 37 371 7 6 109 2 0 115 11 12 78 0 1 1073 0 2 339 7 9 482 2 3 217 0 4 16 8 17 15 2 1 58 0 1 52 17 0 174 1 0 523 5 1 113 4 1 80 0 1 119 0 2 16 4 14 12 chain 32961 chr1 249250621 + 92135844 92136304 LTR2 463 - 0 463 79271 16 6 7 5 1 0 50 22 23 6 0 1 4 1 0 190 4 6 155 chain 17941 chr1 249250621 + 92188182 92188417 Tigger3a 397 - 13 258 133004 214 1 11 20 chain 8648 chr1 249250621 + 92203410 92203780 MLT2B4 540 + 0 492 167490 38 2 3 35 19 19 11 52 57 37 0 1 5 141 255 14 0 1 16 chain 12775 chr1 249250621 + 92230505 92230718 MER30 238 + 0 235 149156 22 1 9 77 4 0 15 26 41 26 0 3 42 chain 3091 chr1 249250621 + 92259694 92259746 L1MB8 1703 - 44 94 223082 29 7 5 16 chain 3339 chr1 249250621 + 92286909 92286948 MADE1 96 - 57 96 218240 39 chain 22531 chr1 249250621 + 92301546 92301806 AluSp 311 + 24 284 117890 260 chain 3158 chr1 249250621 + 92313901 92313937 MER5A1 166 + 101 137 221770 36 chain 3272 chr1 249250621 + 92319606 92319709 L1MA8 2339 + 2103 2179 219552 16 25 0 19 1 2 13 10 7 19 chain 5669 chr1 249250621 + 92330801 92330864 MER41A 554 + 403 466 188403 63 chain 9466 chr1 249250621 + 92330878 92331005 L1PA6 6164 + 6035 6151 163246 65 11 0 51 chain 22776 chr1 249250621 + 92344553 92344836 AluSz6 309 + 10 293 116702 283 chain 23747 chr1 249250621 + 92380733 92381026 AluSg7 307 + 11 307 111793 80 0 5 191 2 0 20 chain 29685 chr1 249250621 + 92389060 92389369 AluYg6 310 - 1 310 85886 309 chain 60543 chr1 249250621 + 92438752 92439428 L1PA5 6144 - 1413 2093 52553 380 0 4 296 chain 124600 chr1 249250621 + 92439433 92440846 L1PA5 6144 + 4723 6141 29509 222 0 1 345 0 4 587 8 9 235 1 0 15 chain 2989 chr1 249250621 + 92443966 92443999 MADE1 96 - 59 92 225251 33 chain 27774 chr1 249250621 + 92463725 92464059 L1PA7 6471 + 6122 6466 93784 275 1 11 58 chain 20855 chr1 249250621 + 92473488 92473765 AluSq2 311 - 24 302 124440 133 0 3 7 13 11 124 chain 132641 chr1 249250621 + 92490920 92492463 SVA_B 1603 - 9 1603 27490 423 0 2 167 5 41 36 4 0 868 21 38 19 chain 22189 chr1 249250621 + 92493931 92494220 AluY 311 + 1 299 119403 66 4 19 144 7 1 68 chain 9319 chr1 249250621 + 92499257 92499368 MLT1A1 405 - 24 135 163965 111 chain 21203 chr1 249250621 + 92499608 92499877 AluY 311 + 41 303 123200 92 18 11 159 chain 2783 chr1 249250621 + 92544468 92544527 MIR 256 + 75 133 228969 20 15 14 24 chain 47418 chr1 249250621 + 92551376 92551966 LTR14B 630 - 0 630 60887 72 0 15 88 0 4 193 0 20 175 0 1 39 1 0 4 0 1 18 chain 9629 chr1 249250621 + 92566508 92566756 L1PB1 5432 - 14 242 162442 14 1 0 11 2 1 22 1 0 24 2 0 11 11 8 19 28 14 13 1 0 43 8 7 10 13 17 14 chain 8541 chr1 249250621 + 92571238 92571602 MER57D 437 - 0 391 168060 21 12 16 66 116 145 19 57 52 8 5 0 29 15 19 16 chain 10490 chr1 249250621 + 92589243 92589358 AluYc 301 + 181 296 158285 115 chain 2981 chr1 249250621 + 92613524 92613560 MLT2F 649 - 2 38 225434 36 chain 4773 chr1 249250621 + 92629168 92629222 LTR12F 595 - 130 184 197662 54 chain 7097 chr1 249250621 + 92633143 92633222 L1PA5 6144 + 6059 6138 176774 79 chain 24656 chr1 249250621 + 92638487 92638777 AluSp 311 - 17 307 106692 290 chain 15669 chr1 249250621 + 92680017 92680359 THE1D 372 + 0 338 139370 15 0 2 4 1 0 30 10 1 13 24 26 26 1 0 49 69 72 100 chain 16041 chr1 249250621 + 92686662 92686892 L1PA16 3655 + 3360 3591 138246 15 1 4 36 5 6 156 3 0 14 chain 502803 chr1 249250621 + 92697673 92703284 L1PA3long 6157 - 5 6157 6680 502 0 1 2392 0 2 1047 0 2 1014 0 3 474 0 7 86 0 526 96 chain 2656 chr1 249250621 + 92704981 92705009 MER53 195 - 0 28 230934 28 chain 4601 chr1 249250621 + 92709271 92709404 MER21C 908 + 430 575 199621 34 62 74 37 chain 470340 chr1 249250621 + 92718773 92724453 L1PA7 6471 + 749 6456 8022 7 2 0 127 0 2 104 1 0 282 24 23 31 0 2 66 0 3 145 0 1 217 1 0 148 0 1 241 0 8 104 1 0 132 0 1 29 0 3 215 1 0 185 0 2 236 4 0 404 0 3 32 2 0 42 1 5 20 0 8 131 3 1 114 6 5 180 1 0 658 0 4 142 0 4 167 8 9 338 26 10 282 0 5 70 0 2 12 0 3 593 7 8 18 0 3 115 1 0 4 chain 512776 chr1 249250621 + 92745042 92751177 L1PA6 6164 + 0 6159 5900 406 9 11 32 8 0 88 11 13 19 1 0 149 1 0 69 0 17 95 4 8 1047 1 0 380 3 0 856 2 1 568 0 8 251 0 1 44 2 1 1094 0 1 80 1 0 76 4 8 68 0 2 54 1 3 704 2 0 5 chain 20042 chr1 249250621 + 92758612 92758897 L1MA2 4263 + 3509 3796 127005 75 6 2 39 1 4 32 3 5 7 0 1 122 chain 13136 chr1 249250621 + 92765493 92765736 Tigger3a 397 - 73 397 147703 44 1 0 5 0 1 82 0 31 22 19 68 15 29 30 26 chain 161641 chr1 249250621 + 92792563 92794809 L1PBa 3878 - 1600 3788 23107 122 94 32 257 5 8 36 0 1 52 1 3 138 8 7 68 2 1 34 0 1 70 0 2 459 2 3 16 0 6 47 0 4 41 0 1 248 1 2 68 7 9 20 1 0 146 1 0 4 0 1 53 0 9 30 1 2 47 2 0 18 1 0 47 42 19 47 1 0 9 chain 16142 chr1 249250621 + 92821254 92821466 Tigger4a 237 + 23 236 137928 147 3 4 62 chain 193013 chr1 249250621 + 92847329 92849474 L1PA4 6152 - 1 2160 19771 147 1 2 759 0 1 68 0 1 815 0 4 183 0 1 97 1 0 27 0 7 47 chain 478982 chr1 249250621 + 92853959 92860042 L1PA7 6471 + 6 6470 7765 183 1 0 8 15 14 27 137 333 42 7 8 100 5 15 57 1 76 171 10 31 160 0 4 32 0 1 1044 0 1 320 1 2 179 0 9 282 0 2 53 3 5 1157 2 1 349 0 4 56 0 51 686 0 5 146 2 1 177 0 1 508 0 1 162 chain 24713 chr1 249250621 + 92888939 92889254 AluSp 311 - 15 311 106368 8 18 0 240 2 1 47 chain 526586 chr1 249250621 + 92896328 92902445 L1PA5 6144 - 5 6139 4535 923 1 0 65 0 5 264 0 1 443 0 1 460 0 2 230 5 4 232 2 0 1128 0 4 61 0 1 5 8 0 1011 13 23 106 9 0 1036 0 14 115 chain 7619 chr1 249250621 + 92922348 92922483 MER3 215 - 17 166 173419 14 9 15 28 13 21 71 chain 25201 chr1 249250621 + 92929575 92929874 AluSx1 309 + 1 305 103736 108 0 5 191 chain 23292 chr1 249250621 + 92962509 92962791 HERVL-int 5654 - 5367 5654 114247 22 0 2 91 0 2 100 0 1 69 chain 8828 chr1 249250621 + 92963604 92963712 L1PA8 5853 - 0 106 166501 93 2 0 13 chain 3776 chr1 249250621 + 92972743 92972785 LSU-rRNA_Hsa 377 - 12 54 210729 42 chain 5690 chr1 249250621 + 92985482 92985578 L1MB8 1703 + 1485 1588 188202 13 13 20 16 0 1 29 1 0 24 chain 319411 chr1 249250621 + 92995945 93000000 L1P2 5180 + 594 4658 12618 143 21 0 50 0 15 87 8 12 139 4 5 5 1 0 1147 9 11 175 0 2 575 0 1 57 1 0 171 1 0 15 11 5 23 0 4 56 2 0 134 0 4 207 0 5 256 0 2 46 0 1 378 1 0 67 28 29 237 chain 21620 chr1 249250621 + 93000000 93000260 L1PA7 6471 + 4972 5233 121696 225 7 8 28 chain 41414 chr1 249250621 + 93000260 93000783 L1PA7 6471 + 5240 5771 67401 313 10 5 65 0 5 28 0 6 25 7 9 75 chain 60000 chr1 249250621 + 93000783 93001474 L1PA7 6471 + 5778 6468 52824 435 1 0 255 chain 5449 chr1 249250621 + 93008165 93008233 Tigger1 2417 - 1490 1561 190541 13 0 3 55 chain 337524 chr1 249250621 + 93012269 93016058 L1PA5 6144 + 2343 6139 11963 96 7 8 753 0 2 888 0 2 566 1 0 1025 0 2 311 0 1 142 chain 21548 chr1 249250621 + 93016079 93016332 AluY 311 + 57 311 121971 69 0 1 184 chain 24140 chr1 249250621 + 93044009 93044299 AluY 311 + 19 307 109518 102 3 0 5 0 1 180 chain 538099 chr1 249250621 + 93054686 93061127 L1PA4 6152 + 0 6146 3137 1459 0 2 740 0 2 372 0 3 253 311 0 207 0 1 797 0 1 799 0 5 874 0 2 629 chain 23365 chr1 249250621 + 93076408 93076666 L1PA2 6032 + 5773 6031 113837 258 chain 34007 chr1 249250621 + 93079948 93080504 MLT2A1 477 + 0 477 77607 142 8 9 18 0 4 210 129 45 49 chain 331046 chr1 249250621 + 93080504 93084615 HERVL-int 5654 + 0 5639 12161 170 2 0 184 1 0 68 0 36 17 0 2 147 5 4 216 0 2 50 1 0 9 0 2 31 12 16 37 3 2 45 0 2 441 0 1 158 6 7 84 0 1477 131 4 0 3 16 0 750 4 6 740 1 2 258 0 2 176 3 6 5 1 0 130 0 20 202 chain 27388 chr1 249250621 + 93084636 93085062 MLT2A1 477 + 0 477 95011 20 15 22 94 5 7 25 1 5 43 0 8 150 2 0 11 20 52 40 chain 83576 chr1 249250621 + 93092588 93094125 L1PB1 5432 - 8 1193 42087 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 9 0 15 3 0 15 7 6 38 1 0 16 2 1 53 2 0 7 18 13 9 1 0 24 1 0 11 9 0 117 0 2 5 4 0 9 4 0 251 316 7 5 0 2 80 11 16 291 2 0 79 chain 525517 chr1 249250621 + 93095233 93101354 L1PA4 6152 - 9 6150 4624 315 1 0 1013 11 0 978 0 1 154 2 1 306 0 4 143 0 4 533 0 1 215 0 1 382 8 0 293 0 2 84 6 4 153 0 2 724 1 0 275 0 1 352 22 49 25 31 32 94 chain 116549 chr1 249250621 + 93105245 93106734 L1PA8A 6298 + 4749 6291 32269 15 0 1 57 1 0 128 1 2 24 0 1 86 0 4 276 0 5 140 0 3 79 2 3 180 7 32 251 1 11 136 1 8 6 4 0 94 chain 22189 chr1 249250621 + 93113630 93113936 AluY 311 + 9 289 119402 124 29 2 24 0 1 129 chain 5022 chr1 249250621 + 93125854 93125921 L1MA6 2487 + 2339 2402 194906 40 3 0 19 1 0 4 chain 20326 chr1 249250621 + 93139828 93140062 L1PA7 6471 + 6046 6280 126158 234 chain 16847 chr1 249250621 + 93140063 93140253 L1PA7 6471 + 6280 6470 135992 190 chain 429664 chr1 249250621 + 93148781 93153888 L1PA6 6164 + 805 5953 9315 132 9 12 99 0 5 13 1 2 5 1 0 317 0 8 48 1 0 888 1 0 522 0 1 104 0 2 226 0 1 50 0 4 99 0 2 135 1 0 60 4 4 177 0 1 230 0 1 58 0 2 355 0 4 127 0 2 817 0 4 107 0 1 45 0 1 64 0 2 411 chain 23311 chr1 249250621 + 93162321 93162601 AluY 311 + 8 287 114149 115 2 0 9 0 1 154 chain 5992 chr1 249250621 + 93166424 93166491 U4 144 - 77 144 185310 67 chain 491631 chr1 249250621 + 93181047 93187235 L1PA6 6164 + 0 6156 7286 538 8 7 242 0 17 269 312 0 348 0 236 85 0 4 588 3 1 102 0 3 78 0 2 336 0 1 340 5 4 105 9 8 78 1 0 23 0 1 25 0 1 251 4 3 602 0 14 53 0 8 662 1 2 348 6 10 66 11 6 689 chain 22357 chr1 249250621 + 93187873 93188131 L1PA4 6152 - 1 258 118676 17 1 0 240 chain 73482 chr1 249250621 + 93188889 93189928 MER11A 1151 + 0 1151 46796 79 0 8 103 11 10 28 1 0 66 0 11 164 15 31 32 0 12 19 1 0 119 20 24 37 0 4 69 0 2 16 2 60 42 0 3 52 8 7 87 1 0 27 1 0 39 chain 6964 chr1 249250621 + 93212718 93212804 MER2 342 + 142 227 177716 62 1 0 23 chain 5086 chr1 249250621 + 93212925 93212987 MLT1C 463 - 4 66 194222 62 chain 5755 chr1 249250621 + 93218278 93218379 LTR45 522 + 409 508 187594 15 11 12 10 3 0 62 chain 3407 chr1 249250621 + 93232309 93232348 MER44B 551 + 68 107 216968 39 chain 3126 chr1 249250621 + 93239619 93239654 Tigger7 736 - 638 673 222432 35 chain 26949 chr1 249250621 + 93271245 93271599 THE1A 353 + 0 353 96457 84 1 0 4 0 1 15 7 6 243 chain 23092 chr1 249250621 + 93290191 93290479 AluSc 308 + 9 293 115184 232 4 0 52 chain 5160 chr1 249250621 + 93293705 93293846 MLT1A0 366 - 49 191 193452 34 2 1 7 0 1 22 57 58 19 chain 26068 chr1 249250621 + 93344095 93344380 AluYf4 310 + 0 285 99763 285 chain 546836 chr1 249250621 + 93357080 93363215 L1PA4 6152 + 1 6143 1848 279 2 3 464 2 0 117 0 8 439 6 5 2749 0 1 1110 0 1 721 2 1 244 chain 32734 chr1 249250621 + 93389961 93390429 LTR3A 482 - 5 482 79636 50 31 29 17 0 1 90 1 2 116 8 17 155 chain 3954 chr1 249250621 + 93406226 93406277 Charlie2b 853 - 28 78 208089 26 1 0 24 chain 45167 chr1 249250621 + 93448536 93449624 Tigger1 2417 + 1458 2086 62857 57 11 12 58 165 1 58 0 1 64 0 3 26 304 0 163 1 2 110 0 2 71 chain 95965 chr1 249250621 + 93474552 93475826 HSMAR1 1287 - 2 1287 37831 346 34 28 147 1 2 111 4 12 203 0 6 130 4 0 152 0 4 16 4 6 122 chain 50291 chr1 249250621 + 93483560 93484696 L1PB3 3668 + 2816 3614 58795 28 6 10 134 2 0 9 4 1 84 1 4 22 0 1 63 0 1 118 1 0 87 1 0 4 322 9 87 20 4 24 1 0 22 12 10 22 13 9 13 1 0 13 9 6 13 chain 8359 chr1 249250621 + 93491691 93491801 MLT1B 390 - 0 111 169079 31 1 2 78 chain 7469 chr1 249250621 + 93492968 93493054 HY3 101 - 1 87 174348 86 chain 7327 chr1 249250621 + 93509182 93509268 Tigger3c 601 + 451 537 175252 86 chain 24506 chr1 249250621 + 93513637 93514020 MER75 514 - 4 374 107511 15 1 2 24 2 0 49 0 1 139 20 16 47 17 8 69 chain 19165 chr1 249250621 + 93517990 93518206 L1PA4 6152 + 5927 6143 129630 216 chain 35271 chr1 249250621 + 93524797 93525204 L1PA7 6471 - 6 414 75830 151 0 1 32 1 0 149 0 1 74 chain 10983 chr1 249250621 + 93525205 93525367 L1PA8 5853 - 97 255 156258 15 2 1 45 0 1 5 1 0 10 2 1 70 2 0 10 chain 3416 chr1 249250621 + 93533962 93533999 MER5A 189 - 50 87 216827 37 chain 24872 chr1 249250621 + 93537387 93538683 Tigger1 2417 + 1588 1963 105506 83 4 8 144 623 0 31 1 2 32 308 2 40 0 3 30 chain 4956 chr1 249250621 + 93573117 93573191 Charlie1a 1436 + 416 491 195640 41 3 4 30 chain 9938 chr1 249250621 + 93627041 93627169 MER85 139 + 0 139 160885 94 0 11 34 chain 147421 chr1 249250621 + 93631617 93633666 L1MA2 4263 - 150 2181 24974 9 1 0 46 7 0 51 1 0 41 1 0 9 2 1 147 3 0 98 0 2 47 1 0 77 27 24 78 0 1 313 0 2 195 1 0 14 6 5 37 7 8 138 0 1 59 19 23 41 5 3 110 3 2 31 0 1 187 0 1 179 29 21 29 chain 91069 chr1 249250621 + 93635651 93636972 LTR12C 1709 + 0 1709 39269 24 53 62 170 4 5 29 5 6 42 0 43 83 14 9 280 2 0 14 21 28 25 25 0 17 1 17 16 14 358 393 5 4 84 chain 25004 chr1 249250621 + 93647180 93647469 AluSg7 307 - 17 305 104759 164 1 0 124 chain 19436 chr1 249250621 + 93654829 93655141 L1MA2 4263 - 150 457 128856 8 1 0 20 0 6 6 37 26 30 0 1 37 0 2 11 1 0 8 1 0 152 chain 4390 chr1 249250621 + 93658397 93658448 MER5A 189 + 25 76 202083 51 chain 11148 chr1 249250621 + 93686701 93687005 L1PA11 4918 - 289 560 155647 18 102 82 7 2 0 3 3 0 11 1 0 19 1 0 15 2 0 68 3 0 10 8 7 31 chain 23180 chr1 249250621 + 93707733 93708065 THE1B 368 - 0 361 114770 125 30 45 29 1 0 110 0 15 37 chain 113796 chr1 249250621 + 93708077 93709578 THE1B-int 1605 - 5 1605 33150 4 0 1 384 0 1 126 1 0 17 4 0 103 12 13 446 6 101 133 0 3 184 0 1 47 9 11 25 chain 18136 chr1 249250621 + 93709578 93709853 THE1B 368 - 0 290 132503 125 29 45 25 2 1 94 chain 3819 chr1 249250621 + 93709870 93709914 THE1B 368 - 324 368 210109 44 chain 21903 chr1 249250621 + 93713563 93713870 AluSg7 307 - 0 307 120608 152 18 18 5 0 1 67 13 12 52 chain 46629 chr1 249250621 + 93726180 93726722 L1PA7 6471 - 2 546 61517 11 0 2 531 chain 3576 chr1 249250621 + 93729394 93729444 THE1D 372 + 286 336 214035 25 1 0 4 0 1 20 chain 327255 chr1 249250621 + 93731214 93734979 L1PA5 6144 + 2343 6130 12300 502 0 1 1108 0 3 309 0 4 171 0 2 183 1 0 98 0 12 320 13 5 85 0 5 140 0 4 835 chain 75678 chr1 249250621 + 93742338 93743306 LTR5_Hs 974 - 0 974 45668 103 22 20 17 8 15 163 1 0 188 0 1 177 0 1 289 chain 19046 chr1 249250621 + 93746868 93747137 MSTA-int 1630 - 12 282 129986 29 0 3 5 1 0 22 0 1 43 1 0 136 6 5 26 chain 25907 chr1 249250621 + 93752879 93753247 THE1C 375 + 0 375 100394 102 3 6 10 0 1 8 3 0 15 7 11 30 2 3 24 0 3 45 1 0 91 1 0 26 chain 10646 chr1 249250621 + 93784769 93785065 MER30 238 + 66 237 157617 35 162 37 99 chain 3113 chr1 249250621 + 93787983 93788040 MADE1 96 + 0 83 222680 21 12 38 24 chain 15770 chr1 249250621 + 93793070 93793298 MER47A 366 - 0 228 139056 58 23 22 72 0 1 75 chain 43636 chr1 249250621 + 93851736 93852235 MER9a1 513 - 0 500 64645 34 0 1 465 chain 249341 chr1 249250621 + 93853554 93856453 L1PA5 6144 - 2 2883 16291 7 4 0 180 20 6 34 4 0 628 1 0 257 0 1 269 0 1 802 0 3 693 chain 97854 chr1 249250621 + 93856453 93857695 L1PA5 6144 + 2118 3255 37235 229 118 11 22 0 1 633 1 2 239 chain 7605 chr1 249250621 + 93856716 93856800 L1PA5 6144 + 2259 2343 171236 84 chain 8127 chr1 249250621 + 93859614 93859710 AluJr 308 - 190 286 170349 96 chain 23509 chr1 249250621 + 93862206 93862481 AluYk4 311 + 32 304 113083 249 3 0 23 chain 30676 chr1 249250621 + 93867116 93867499 THE1D-int 1627 + 15 398 83082 23 3 4 4 1 0 352 chain 542089 chr1 249250621 + 93867525 93873655 L1PA4 6152 - 9 6146 2489 330 0 1 504 0 4 267 0 1 270 1 2 4758 chain 57298 chr1 249250621 + 93878630 93879387 MER4E1 777 - 7 760 54340 117 2 3 92 46 37 480 0 4 20 chain 30093 chr1 249250621 + 93907742 93908176 LTR3B 427 - 0 427 84505 30 10 11 43 24 18 26 4 1 136 0 1 161 chain 5335 chr1 249250621 + 93920252 93920411 MER2 342 + 31 215 191684 20 57 81 28 2 0 24 6 9 22 chain 143186 chr1 249250621 + 93930765 93932423 L1PA6 6164 - 2 1663 25620 847 2 0 22 0 5 609 1 0 30 0 1 147 chain 42320 chr1 249250621 + 93934644 93935148 L1PA6 6164 - 2 501 66243 9 3 0 339 2 0 151 chain 84743 chr1 249250621 + 93944583 93945708 MER11A 1151 - 0 1151 41621 14 1 2 37 0 4 9 1 0 9 0 4 183 0 1 32 10 17 159 0 1 65 14 3 52 6 0 6 0 1 12 5 7 205 0 2 21 0 11 184 21 31 79 chain 21377 chr1 249250621 + 93968647 93968986 THE1C 375 - 0 375 122595 25 1 0 101 44 80 74 7 8 87 chain 11158 chr1 249250621 + 93969939 93970075 THE1A 353 + 217 353 155603 136 chain 44197 chr1 249250621 + 93970771 93971334 LTR10C 591 - 0 591 63949 57 6 11 13 0 2 24 7 17 95 0 13 33 1 0 178 3 2 146 chain 538546 chr1 249250621 + 93975157 93981484 L1PA3long 6157 + 1 6157 3061 152 0 1 17 6 6 403 0 4 192 0 128 249 9 12 1044 316 0 1050 0 4 1091 0 4 76 1 0 876 0 4 700 0 1 127 3 0 15 chain 6318 chr1 249250621 + 93981833 93981906 tRNA-Cys-TGY 72 - 0 72 182660 56 1 0 16 chain 11299 chr1 249250621 + 93995008 93995138 L1PA7 6471 - 10 140 155060 130 chain 23869 chr1 249250621 + 94029847 94030125 AluSp 311 - 8 302 111088 64 1 17 213 chain 9974 chr1 249250621 + 94084803 94084923 MER107 203 - 75 203 160705 99 0 10 5 2 0 14 chain 8933 chr1 249250621 + 94095618 94095776 L1MA3 4352 + 4181 4352 165961 19 1 2 40 0 6 9 3 1 24 1 0 6 1 0 27 5 15 22 chain 4869 chr1 249250621 + 94098196 94098311 MER58B 340 - 105 237 196605 57 42 59 16 chain 23841 chr1 249250621 + 94099799 94100471 THE1B 368 + 0 368 111241 44 0 15 104 0 2 7 1 0 2 330 0 24 35 45 125 chain 24139 chr1 249250621 + 94103527 94103817 AluSc8 310 + 4 297 109527 128 0 3 162 chain 60767 chr1 249250621 + 94109468 94110226 MER4E1 777 + 0 770 52442 23 1 2 128 0 3 5 0 4 299 5 4 4 0 1 68 1 9 59 4 0 161 chain 6902 chr1 249250621 + 94119973 94120117 MLT1E3 631 + 376 552 178176 75 47 79 22 chain 15932 chr1 249250621 + 94135344 94135623 L1PB1 5432 + 5158 5413 138574 11 2 0 51 2 1 16 1 0 19 0 1 24 1 0 15 24 12 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 16703 chr1 249250621 + 94233152 94233382 MER75B 242 - 0 242 136398 43 0 8 42 9 13 136 chain 7364 chr1 249250621 + 94242150 94242300 L1MC5 759 - 48 197 175010 77 45 44 28 chain 107239 chr1 249250621 + 94252860 94254246 L1PBa 3878 - 1183 2574 34902 28 1 0 811 20 16 21 0 11 188 1 0 168 1 0 103 4 5 40 chain 559189 chr1 249250621 + 94256208 94262237 L1PA2 6032 - 0 6031 408 618 0 2 5411 chain 70790 chr1 249250621 + 94299659 94300580 HERVH-int 3825 + 2536 3825 48018 244 1 0 39 0 367 217 46 46 233 0 2 141 chain 3425 chr1 249250621 + 94313128 94313165 tRNA-Arg-AGA 37 + 0 37 216670 37 chain 71784 chr1 249250621 + 94315828 94316790 LTR13 1007 - 0 1007 47571 31 10 7 6 0 2 40 0 5 103 0 1 108 7 1 11 5 17 151 1 29 108 5 6 269 0 3 14 0 4 18 2 0 73 chain 23842 chr1 249250621 + 94319902 94320191 AluSp 311 + 8 296 111235 48 2 1 239 chain 539278 chr1 249250621 + 94321288 94327417 L1PA4 6152 + 1 6143 2935 55 1 0 617 11 7 877 0 2 176 0 2 575 6 1 916 0 2 19 0 4 737 0 5 358 0 4 277 2 0 269 0 4 287 0 2 946 chain 84677 chr1 249250621 + 94333488 94334555 L1PA7 6471 + 5385 6470 41649 16 0 2 217 0 7 73 0 2 69 1 0 415 14 9 112 3 4 51 1 4 48 0 4 30 5 10 12 chain 500766 chr1 249250621 + 94376293 94382332 L1PA6 6164 - 2 6160 6797 4 1 0 299 0 1 282 0 1 275 0 4 500 0 7 1323 0 93 35 1 0 94 0 4 50 5 6 293 0 1 177 0 3 126 1 5 64 5 32 157 0 1 64 0 2 516 1 0 221 11 5 789 7 6 4 0 1 207 2 1 85 1 0 6 19 5 14 24 22 6 3 0 306 31 31 30 chain 361619 chr1 249250621 + 94394204 94398919 L1PB1 5432 + 756 5395 11323 222 0 1 177 7 8 49 4 5 8 0 2 116 0 1 34 0 2 16 12 0 13 9 0 78 8 0 706 0 1 226 1 16 57 7 0 29 0 1 318 6 5 526 5 4 355 1 0 224 0 1 593 1 0 78 1 3 181 3 4 216 0 2 48 4 1 11 50 20 24 1 0 9 1 0 10 6 2 8 2 0 53 3 1 16 1 0 44 1 0 15 1 0 4 22 8 19 3 1 4 1 0 11 7 5 22 1 0 21 1 0 4 chain 59179 chr1 249250621 + 94400796 94401637 Tigger1 2417 + 909 1766 53292 60 0 2 136 25 27 271 0 3 42 1 0 18 0 2 197 34 36 35 0 6 22 chain 139878 chr1 249250621 + 94404683 94406268 L1PA5 6144 - 3 1593 26160 214 0 5 1371 chain 47284 chr1 249250621 + 94406268 94406808 L1PA5 6144 + 4013 4554 60977 347 0 1 193 chain 4472 chr1 249250621 + 94416954 94417005 L1MA4A 3247 - 1615 1666 201099 51 chain 93217 chr1 249250621 + 94417253 94418325 MER11C 1089 - 16 1089 38594 474 6 7 592 chain 88295 chr1 249250621 + 94539714 94540885 L1PA8 5853 + 4488 5853 40264 242 9 11 103 0 1 109 8 190 139 0 3 113 0 15 150 1 0 44 2 0 73 1 0 11 0 1 5 12 8 34 2 1 19 1 0 93 chain 533489 chr1 249250621 + 94599675 94605813 L1PA4 6152 + 2 6150 3771 34 1 3 1493 0 1 26 0 2 154 0 1 600 18 12 246 1 4 1484 2 11 703 5 0 698 1 3 344 0 3 73 0 1 167 0 1 75 3 0 5 1 0 4 chain 64029 chr1 249250621 + 94614515 94615284 MER4E1 777 - 0 777 50998 127 1 0 100 1 9 169 0 2 344 1 0 26 chain 26403 chr1 249250621 + 94616174 94616457 AluYk11 308 + 16 299 98402 283 chain 34738 chr1 249250621 + 94627182 94627608 MLT2A1 477 - 0 477 76562 44 2 48 206 0 1 4 1 5 169 chain 355477 chr1 249250621 + 94627617 94632328 HERVL-int 5654 - 9 5654 11462 210 307 11 88 0 1 35 0 6 6 0 2 59 0 1 321 0 3 496 4 5 138 8 6 55 1 2 283 1 5 31 18 515 1218 0 2 101 0 7 41 0 1 5 1 0 168 0 3 429 9 0 51 4 709 27 11 3 78 0 8 129 0 4 151 16 19 149 0 1 62 chain 28576 chr1 249250621 + 94632394 94632777 MLT2A1 477 - 86 477 90841 8 1 0 178 0 1 5 1 2 23 1 5 55 1 0 93 0 4 17 chain 20595 chr1 249250621 + 94664540 94664802 L1PA6 6164 + 5900 6162 125314 8 2 0 101 1 0 4 2 3 135 0 2 9 chain 17104 chr1 249250621 + 94677313 94677517 L1PA4 6152 - 1 206 135299 103 0 1 101 chain 23846 chr1 249250621 + 94715026 94715320 AluSp 311 + 2 295 111207 130 2 0 38 0 1 124 chain 3467 chr1 249250621 + 94734304 94734343 AluJr4 308 - 67 106 215852 39 chain 7104 chr1 249250621 + 94751686 94751879 MLT1A 405 - 125 375 176733 62 87 145 15 1 0 28 chain 496926 chr1 249250621 + 94753083 94759171 L1PA6 6164 - 21 6164 7014 119 0 1 4 0 1 192 1 0 223 1 7 842 0 7 103 0 1 64 0 1 359 2 0 521 2 3 229 36 103 87 1 2 60 0 1 23 5 6 477 0 1 123 0 4 248 42 10 1294 0 1 209 0 17 231 1 0 119 19 0 217 3 2 231 chain 2966 chr1 249250621 + 94774786 94774821 MIRc 230 - 93 128 225742 35 chain 59085 chr1 249250621 + 94778990 94779689 L1PA6 6164 + 5457 6162 53344 139 2 8 242 0 1 311 1 0 4 chain 5144 chr1 249250621 + 94783255 94783337 L1MB3 1562 + 1468 1550 193610 17 3 4 33 2 1 27 chain 11423 chr1 249250621 + 94814008 94814174 L1PA15 4387 - 214 376 154593 43 1 0 26 1 0 54 4 2 37 chain 514696 chr1 249250621 + 94829817 94835966 L1PA6 6164 - 2 6164 5704 11 1 0 135 25 13 1629 0 2 100 1 0 194 0 1 124 0 1 100 3 2 320 0 1 229 1 0 110 0 1 154 0 1 254 6 7 391 0 1 55 0 1 692 0 1 944 5 6 143 1 2 77 1 0 223 2 3 87 2 18 129 chain 34206 chr1 249250621 + 94837368 94837874 LTR12 884 - 290 884 77341 108 0 1 85 0 22 36 1 2 60 25 91 46 1 0 110 17 16 17 chain 401764 chr1 249250621 + 94839009 94843876 HERV9-int 5642 - 844 5626 10034 128 1 0 552 0 4 2113 0 1 733 0 1 153 1 0 13 164 0 77 0 85 147 1 0 75 6 0 113 7 3 516 2 3 65 chain 3252 chr1 249250621 + 94842708 94842744 HERV9-int 5642 - 4542 4578 219980 36 chain 39964 chr1 249250621 + 94854807 94855315 MER9a3 513 + 0 513 69373 18 0 2 71 0 1 8 10 11 322 2 3 77 chain 3520 chr1 249250621 + 94861258 94861300 MADE1 96 - 4 46 215061 42 chain 31517 chr1 249250621 + 94868358 94868707 L1PA2 6032 - 3 349 81619 12 3 0 334 chain 9883 chr1 249250621 + 94874733 94874927 L1MA3 4352 + 4168 4352 161161 11 1 0 67 15 13 23 8 6 26 1 0 14 1 0 4 6 3 17 chain 2589 chr1 249250621 + 94887841 94887943 MER1B 344 - 109 210 231824 11 2 0 17 0 1 6 49 49 17 chain 19338 chr1 249250621 + 94894101 94894385 THE1B 368 + 64 368 129117 16 1 2 60 4 22 28 0 2 100 14 13 61 chain 124103 chr1 249250621 + 94894385 94895934 THE1B-int 1605 + 0 1592 29666 133 0 1 215 0 1 80 1 26 993 8 22 14 0 2 105 chain 36449 chr1 249250621 + 94910386 94910839 MER9a3 513 + 43 498 74297 68 0 1 65 0 1 164 0 1 90 0 1 22 2 0 42 chain 352264 chr1 249250621 + 94911640 94915859 HERVK9-int 4720 + 36 4720 11542 13 8 5 4 1 0 66 1 0 8 1 0 8 17 42 363 0 4 646 0 3 126 8 0 644 12 13 534 2 0 112 0 451 223 0 2 5 2 0 63 6 5 378 2 1 440 1 0 200 0 1 159 1 0 165 chain 39448 chr1 249250621 + 94915859 94916345 MER9a3 513 + 0 513 70095 22 0 1 87 0 1 68 0 1 94 12 30 17 0 7 106 0 1 21 2 0 57 chain 26784 chr1 249250621 + 94918873 94919173 AluYf4 310 - 9 310 97032 94 0 1 206 chain 112545 chr1 249250621 + 94949054 94950355 L1PA5 6144 + 4838 6144 33518 453 0 4 190 0 2 168 0 1 154 2 3 326 3 0 5 chain 6613 chr1 249250621 + 94951784 94951895 MER2 342 + 234 342 180355 61 4 6 18 8 3 20 chain 101848 chr1 249250621 + 94958547 94959660 L1PA3long 6157 + 5041 6157 36300 269 0 4 510 1 0 333 chain 14122 chr1 249250621 + 94968498 94968726 MER30 238 + 0 238 144131 15 15 16 76 10 22 66 3 0 43 chain 473683 chr1 249250621 + 94972549 94977779 L1PA3long 6157 - 1 5234 7925 1792 0 8 49 1 0 482 1 0 136 1 0 378 1 0 985 1 0 1403 chain 7099 chr1 249250621 + 94999036 94999126 MER33 330 - 44 133 176759 32 1 0 57 chain 21450 chr1 249250621 + 94999195 94999923 Tigger2 2703 + 2272 2658 122335 20 0 1 5 40 69 103 363 0 124 3 4 7 12 0 35 0 2 16 chain 21102 chr1 249250621 + 95011606 95011893 AluSp 311 - 23 310 123546 32 1 0 38 0 1 17 1 0 84 15 16 99 chain 31253 chr1 249250621 + 95024720 95025096 L1PA6 6164 + 5782 6161 82076 162 0 3 55 2 0 5 1 3 151 chain 258258 chr1 249250621 + 95034115 95037937 HERVH-int 3825 - 0 3825 15796 85 8 13 278 1 4 6 3 0 51 0 4 46 8 218 15 1 0 26 0 1 4 1 0 375 1 0 36 0 1 475 1 2 88 0 5 265 6 5 4 0 1 37 1 2 171 1 0 4 5 6 166 9 0 38 314 0 67 0 2 82 21 6 107 0 3 145 12 13 173 3 8 7 2 0 30 46 192 12 0 1 10 1 0 45 0 1 5 76 38 29 22 21 63 1 0 333 chain 32608 chr1 249250621 + 95037946 95038382 LTR7 482 - 7 482 79839 154 0 2 23 0 31 40 0 1 109 15 14 42 0 6 53 chain 317314 chr1 249250621 + 95039713 95044879 L1PA11 4918 - 411 4915 12711 19 2 1 15 2 0 52 0 3 10 2 0 13 2 1 23 0 4 40 1 0 514 12 12 47 4 14 9 0 1 88 2 1 253 5 20 94 0 1 4 1 0 57 12 15 199 4 11 77 0 1 150 5 6 39 2 1 415 324 0 38 0 4 47 1 0 100 0 2 5 4 3 143 0 3 85 343 0 53 0 1 84 0 3 6 11 8 210 44 32 32 1 2 173 30 43 62 24 35 534 1 0 5 7 8 93 0 1 5 3 0 160 64 26 72 16 13 28 1 0 43 10 8 14 5 4 25 4 1 41 2 0 39 chain 26857 chr1 249250621 + 95041904 95042211 AluYf4 310 - 3 310 96785 307 chain 46459 chr1 249250621 + 95078549 95079090 MER41A 554 + 13 554 61632 541 chain 71456 chr1 249250621 + 95084138 95085189 MER11C 1089 - 26 1089 47717 25 0 1 64 6 4 7 0 2 29 1 10 10 15 0 45 0 1 127 0 1 38 1 0 4 8 12 79 71 70 213 0 4 58 9 18 241 chain 29392 chr1 249250621 + 95123046 95123480 LTR7Y 441 - 0 441 87107 197 76 92 46 12 3 103 chain 26190 chr1 249250621 + 95124983 95125448 LTR7Y 441 + 0 411 99238 196 62 0 49 1 0 5 69 78 83 chain 31612 chr1 249250621 + 95125448 95125799 L1PA4 6152 + 5800 6151 81464 351 chain 14988 chr1 249250621 + 95138264 95138457 MER75B 242 - 6 192 141361 21 2 0 8 4 0 66 1 0 91 chain 25922 chr1 249250621 + 95151981 95152334 THE1A 353 - 0 353 100329 18 4 5 33 0 1 98 2 0 10 0 3 75 1 0 97 2 0 13 chain 48982 chr1 249250621 + 95163277 95163845 LTR22 571 - 0 571 59764 433 0 3 135 chain 6071 chr1 249250621 + 95178062 95178144 MER53 195 + 114 195 184644 15 1 0 66 chain 6120 chr1 249250621 + 95192009 95192131 MER33 330 - 35 166 184267 52 31 37 27 0 3 12 chain 53683 chr1 249250621 + 95199671 95200439 MER4E1 777 + 17 770 56554 73 0 1 44 23 0 165 7 17 12 0 19 86 1 2 37 14 0 71 2 0 6 15 1 39 0 3 147 0 2 9 0 2 17 chain 140050 chr1 249250621 + 95216909 95218505 L1PA5 6144 - 0 1595 26137 21 1 0 510 1 0 601 0 1 462 chain 411663 chr1 249250621 + 95225374 95230164 L1PA6 6164 + 1346 6161 9755 317 1 4 550 5 0 115 1 2 930 0 4 132 0 1 456 0 4 1063 0 3 106 0 1 280 1 5 14 1 2 41 3 1 30 0 13 322 1 0 412 2 0 7 chain 5736 chr1 249250621 + 95246539 95246614 MER34D 576 - 53 128 187773 75 chain 3103 chr1 249250621 + 95246881 95246916 LTR32 486 - 413 448 222868 35 chain 5451 chr1 249250621 + 95269613 95269678 MLT1B 390 - 324 390 190518 39 0 1 26 chain 26228 chr1 249250621 + 95343515 95343797 AluYf4 310 + 7 289 99099 282 chain 6892 chr1 249250621 + 95346237 95346414 L1MB2 1706 + 1513 1686 178241 18 54 52 15 17 15 73 chain 23761 chr1 249250621 + 95373138 95373420 AluY 311 + 4 287 111696 128 0 1 154 chain 21892 chr1 249250621 + 95382604 95382882 AluSp 311 - 24 300 120654 250 8 6 20 chain 42478 chr1 249250621 + 95396965 95397504 MER41A 554 + 0 554 66037 411 0 2 24 0 7 25 1 6 52 0 1 26 chain 3232 chr1 249250621 + 95403268 95403359 MER57E1 380 + 0 92 220389 21 42 43 28 chain 23323 chr1 249250621 + 95438225 95438524 AluSc 308 - 21 308 114069 21 13 1 265 chain 26959 chr1 249250621 + 95441274 95441600 AluY 311 + 0 310 96408 126 16 0 184 chain 3180 chr1 249250621 + 95450520 95450555 U6 107 - 61 96 221323 35 chain 13758 chr1 249250621 + 95491787 95491997 Tigger1 2417 - 1795 2037 145412 62 10 44 45 22 20 71 chain 5631 chr1 249250621 + 95492477 95492547 MLT1A0 366 - 40 110 188759 70 chain 5428 chr1 249250621 + 95502288 95502354 THE1C 375 + 309 375 190729 66 chain 134778 chr1 249250621 + 95528526 95530222 L1PA11 4918 - 416 2122 27060 14 1 0 13 2 0 68 2 0 13 2 1 55 6 7 116 0 2 261 23 29 32 0 3 62 0 2 245 0 1 225 6 7 550 chain 123534 chr1 249250621 + 95556768 95558356 LTR12C 1709 + 5 1709 29866 259 0 24 549 1 0 95 50 0 37 0 41 102 1 0 5 3 1 106 0 4 231 42 13 4 1 0 48 0 131 54 chain 4079 chr1 249250621 + 95557672 95557722 LTR12C 1709 + 1092 1139 94194 20 1 0 4 4 2 21 chain 24954 chr1 249250621 + 95569947 95570236 AluYf4 310 + 9 297 105037 123 1 0 165 chain 5504 chr1 249250621 + 95570611 95570677 MER47B 469 + 235 301 190009 66 chain 4297 chr1 249250621 + 95591068 95591156 HY1 111 - 0 102 203256 13 7 17 24 8 12 36 chain 14033 chr1 249250621 + 95598784 95598946 L1PA4 6152 + 5985 6152 144442 156 0 5 6 chain 520947 chr1 249250621 + 95624071 95630183 L1PA5 6144 - 5 6144 5062 338 0 1 616 0 2 5 0 1 1174 6 10 58 0 1 258 1 0 516 0 1 65 0 1 391 0 1 114 0 1 49 1 0 1118 0 3 124 28 29 91 9 0 137 1 0 4 1 2 106 0 4 270 1 3 431 0 1 78 1 15 120 chain 42046 chr1 249250621 + 95633002 95633579 LTR14B 630 + 4 630 66565 210 4 22 50 0 7 58 0 21 143 1 0 25 11 14 60 3 4 12 chain 510028 chr1 249250621 + 95676245 95682543 L1PA6 6164 - 2 6164 6163 8 2 0 149 1 2 102 0 1 350 1 2 356 3 1 623 0 1 174 0 1 1200 0 2 467 1 2 165 1 0 27 1 0 203 0 1 14 0 1 803 0 1 252 1 0 25 10 11 277 2 6 194 21 0 172 81 5 115 36 17 68 34 7 103 20 18 236 chain 4401 chr1 249250621 + 95683581 95683635 MER90a 614 - 14 68 201924 54 chain 28155 chr1 249250621 + 95690524 95690824 AluYa5 310 + 0 298 92444 97 2 0 201 chain 3320 chr1 249250621 + 95722628 95722663 MLT2D 439 - 0 35 218573 35 chain 3299 chr1 249250621 + 95727786 95727826 MADE1 96 + 1 41 218981 40 chain 545225 chr1 249250621 + 95757801 95763814 L1PA3long 6157 - 5 6155 2045 988 0 5 1822 0 1 922 0 1 149 0 2 1020 1 0 336 10 138 615 0 1 150 chain 35930 chr1 249250621 + 95792425 95793060 L1PB1 5432 - 5 621 74980 5 2 0 18 1 0 7 10 9 18 1 0 24 17 14 5 2 0 19 19 8 4 1 0 16 1 0 42 2 1 16 2 1 52 2 0 9 5 1 12 1 0 8 1 0 24 27 42 146 1 0 115 chain 29999 chr1 249250621 + 95847765 95848284 LTR69 548 - 30 548 84815 31 54 53 14 10 34 53 8 9 172 36 11 141 chain 32574 chr1 249250621 + 95876307 95876764 LTR2 463 - 0 463 79893 24 1 0 28 1 0 29 6 7 12 0 14 85 15 8 256 chain 4054 chr1 249250621 + 95880387 95880435 MLT1D 503 - 13 61 206577 48 chain 9605 chr1 249250621 + 95880508 95880674 MER30B 195 + 46 188 162576 32 14 0 16 14 1 23 0 6 32 3 0 32 chain 12368 chr1 249250621 + 95911901 95912088 L1MA3 4352 - 35 216 150759 29 1 0 6 1 0 24 3 1 21 4 0 29 0 2 69 chain 284868 chr1 249250621 + 95921511 95924843 L1PA7 6471 + 3124 6468 14360 1064 0 4 69 0 1 344 0 2 464 0 1 548 0 3 86 1 0 428 0 1 43 0 1 285 chain 387532 chr1 249250621 + 95949700 95954791 L1PA8 5853 + 663 5853 10534 166 18 19 318 6 7 139 2 0 253 1 94 910 0 2 117 0 1 142 0 4 34 10 3 4 0 1 57 3 7 15 0 3 346 0 1 446 1 2 11 0 1 4 1 0 192 1 2 52 0 1 438 1 2 140 0 1 122 14 18 267 1 4 185 10 13 191 9 0 166 1 0 46 2 0 68 4 1 9 1 0 52 2 1 15 9 8 89 chain 13835 chr1 249250621 + 95959409 95959574 L1PA7 6471 + 6298 6464 145111 134 0 1 31 chain 50395 chr1 249250621 + 96003556 96004231 LTR12 884 - 0 884 58718 158 1 0 2 0 103 79 1 0 53 3 8 81 0 22 192 8 90 72 1 0 24 chain 81003 chr1 249250621 + 96022232 96023350 MER11A 1151 + 0 1150 43193 55 0 99 76 1 0 61 7 3 32 0 2 115 0 1 94 0 1 72 2 3 71 3 2 148 25 1 26 43 0 58 0 1 51 1 0 7 1 2 169 chain 28779 chr1 249250621 + 96035478 96035782 AluYa5 310 - 6 310 89983 304 chain 133453 chr1 249250621 + 96053927 96055525 L1PA7 6471 + 4864 6466 27332 755 1 0 67 2 1 4 0 1 397 0 1 47 0 3 168 7 8 150 chain 10420 chr1 249250621 + 96094732 96094861 L1MA4 2864 - 235 365 158595 113 0 1 16 chain 25125 chr1 249250621 + 96094871 96095234 THE1C 375 + 0 368 104153 73 1 0 162 5 6 4 1 0 69 0 5 17 17 18 14 chain 8444 chr1 249250621 + 96097725 96097837 L1PA8 5853 + 5741 5853 168598 19 1 0 84 0 1 8 chain 28198 chr1 249250621 + 96099103 96099478 MLT2A1 477 + 0 379 92319 115 1 0 4 0 1 23 0 1 23 2 6 151 1 0 55 chain 33833 chr1 249250621 + 96110136 96110565 MLT2A1 477 - 0 477 77886 35 7 57 203 0 1 11 4 1 169 chain 282563 chr1 249250621 + 96110565 96113959 HERVL-int 5654 - 0 3413 14499 122 0 11 83 0 1 83 0 2 133 0 1 458 0 6 282 5 0 1967 0 3 261 chain 15283 chr1 249250621 + 96114543 96114770 AluSg7 307 + 73 297 140531 58 0 1 6 3 4 62 2 3 68 11 5 17 chain 25788 chr1 249250621 + 96127466 96128135 THE1A 353 + 0 341 100917 111 1 0 91 1 0 10 337 11 118 chain 59008 chr1 249250621 + 96128918 96129662 LTR12 884 - 0 884 53390 372 0 7 12 0 4 111 2 0 37 0 132 194 3 2 13 chain 119055 chr1 249250621 + 96134335 96135748 LTR12C 1709 - 44 1709 31387 437 0 4 106 16 145 136 1 0 25 0 119 391 0 1 301 chain 39204 chr1 249250621 + 96200634 96201165 PRIMA4_LTR 623 + 0 623 70450 96 5 4 88 4 0 47 0 30 16 4 13 7 1 0 27 0 59 236 chain 113242 chr1 249250621 + 96227167 96228739 THE1B-int 1605 - 13 1605 33299 136 5 6 13 1 0 53 11 6 96 0 1 526 66 67 228 19 44 222 1 0 91 8 7 96 chain 3120 chr1 249250621 + 96234153 96234440 Zaphod 902 + 331 618 222556 18 198 200 23 3 0 17 16 17 12 chain 5123 chr1 249250621 + 96248029 96248166 Tigger4a 237 + 0 137 193853 34 65 65 38 chain 11913 chr1 249250621 + 96259919 96260106 MER34A1 583 - 56 246 152539 9 1 0 32 0 1 33 4 6 64 9 10 35 chain 524611 chr1 249250621 + 96262468 96268946 L1PA7 6471 + 0 6468 4715 55 0 2 5 8 4 101 1 0 190 0 1 349 18 8 646 0 1 189 0 1 160 0 1 415 0 17 494 17 0 55 2 1 1110 0 51 24 0 2 120 1 0 669 0 4 342 1 2 10 0 3 154 0 1 434 2 1 57 63 2 104 3 4 66 0 1 601 1 0 11 chain 8364 chr1 249250621 + 96280501 96280624 MLT1B 390 + 248 373 169054 77 10 11 28 0 1 8 chain 32337 chr1 249250621 + 96314287 96314730 THE1B-int 1605 + 0 479 80292 243 0 10 114 0 1 45 23 48 18 chain 9348 chr1 249250621 + 96380168 96380278 L1PA7 6471 + 6351 6461 163807 110 chain 4935 chr1 249250621 + 96407882 96407937 L1HS 6032 + 5977 6032 195869 55 chain 5668 chr1 249250621 + 96408151 96408229 MADE1 96 - 0 94 188408 46 1 17 31 chain 47957 chr1 249250621 + 96421007 96421579 LTR10C 591 + 0 591 60517 359 0 13 136 0 2 12 4 8 61 chain 45821 chr1 249250621 + 96424809 96425322 MER9a1 513 + 0 513 62208 513 chain 417409 chr1 249250621 + 96434528 96440239 L1PA8 5853 - 0 5742 9593 91 3 2 19 2 1 50 6 4 7 1 0 69 2 0 46 1 0 12 0 4 337 12 12 25 19 20 145 0 2 19 10 14 382 1 2 256 1 0 26 0 3 396 0 2 84 2 1 83 1 4 85 0 5 511 3 2 112 0 15 83 6 3 5 0 1 7 1 0 526 0 1 68 1 2 114 5 4 44 7 11 118 27 10 143 1 2 319 0 1 326 0 4 350 35 48 29 0 3 42 7 6 46 40 47 265 1 2 47 5 5 15 18 6 14 128 128 49 chain 22417 chr1 249250621 + 96462591 96462966 THE1C 375 - 0 373 118397 26 1 0 89 0 1 28 48 49 28 20 0 10 0 17 125 chain 5285 chr1 249250621 + 96477500 96477650 MER47B 469 - 42 183 192164 16 63 57 62 3 0 6 chain 3995 chr1 249250621 + 96494117 96494179 MER52A 1651 - 708 761 207460 24 9 0 29 chain 10129 chr1 249250621 + 96506322 96506451 HSMAR2 1300 + 680 809 159952 129 chain 4396 chr1 249250621 + 96510828 96510883 MER92B 628 + 441 495 201992 48 1 0 6 chain 555421 chr1 249250621 + 96517135 96523286 L1PA3long 6157 - 0 6156 779 149 0 1 2714 0 1 591 0 1 436 0 2 1020 1 0 312 0 1 928 chain 8713 chr1 249250621 + 96524229 96524478 MLT1A0 366 + 105 354 167131 41 124 123 31 0 1 53 chain 145637 chr1 249250621 + 96529086 96530683 L1PA3long 6157 + 4561 6157 25234 1427 0 1 60 4 0 101 0 2 5 chain 9051 chr1 249250621 + 96531259 96531392 L1PB4 2604 - 149 280 165311 79 6 4 48 chain 8574 chr1 249250621 + 96545567 96545681 L1PA8 5853 + 5741 5853 167884 19 2 1 44 1 0 48 chain 20447 chr1 249250621 + 96545912 96546244 THE1D 372 - 36 372 125765 66 26 32 45 4 7 119 21 16 51 chain 28229 chr1 249250621 + 96577415 96577713 AluYd8 298 + 0 298 92197 298 chain 7815 chr1 249250621 + 96605677 96606154 LTR12_ 688 + 0 581 64199 52 2 0 192 8 9 86 0 2 72 0 103 65 chain 188047 chr1 249250621 + 96606183 96608258 L1PA3long 6157 - 11 2089 20232 33 0 1 726 1 3 1315 chain 1720 chr1 249250621 + 96608258 96608363 LTR12_ 688 + 581 688 64199 59 0 2 46 chain 58061 chr1 249250621 + 96613226 96613955 LTR12 884 + 0 884 53949 25 1 0 33 1 108 15 0 25 81 2 4 65 0 22 506 chain 242087 chr1 249250621 + 96613981 96617087 HERV9-int 5642 + 5 4824 16667 289 0 3 87 4 5 406 10 9 286 81 1 15 10 7 27 3 0 454 1 2 345 1 0 30 23 24 845 0 1795 55 29 28 97 0 1 8 chain 35301 chr1 249250621 + 96618551 96618993 LTR12 884 + 0 504 75797 22 1 0 33 0 41 270 2 24 114 chain 7561 chr1 249250621 + 96627498 96627610 L1MA7 2200 + 1749 1863 173793 11 0 7 10 4 0 52 1 0 34 chain 117239 chr1 249250621 + 96638613 96639901 L1PA3long 6157 + 4863 6152 32041 437 0 1 851 chain 129793 chr1 249250621 + 96688935 96690460 LTR12C 1709 - 0 1709 28135 154 0 25 302 0 4 107 3 1 5 1 0 115 0 159 593 1 0 244 chain 539055 chr1 249250621 + 96706339 96712672 L1PA3long 6157 - 5 6150 2982 17 0 1 691 0 3 138 0 2 665 1 0 132 1 5 809 1 0 426 321 0 2355 9 137 160 4 0 458 0 1 145 chain 29196 chr1 249250621 + 96709222 96709532 AluYa5 310 - 0 310 88070 310 chain 41121 chr1 249250621 + 96712870 96713419 MLT2A2 560 + 0 560 67750 180 1 0 219 3 14 77 7 8 62 chain 65508 chr1 249250621 + 96727234 96727968 L1PA4 6152 + 5417 6152 50335 233 0 1 501 chain 3717 chr1 249250621 + 96736404 96736445 L1MC3 1789 - 1597 1638 211667 41 chain 19679 chr1 249250621 + 96738594 96738952 MSTA 426 - 0 426 128166 107 14 22 16 15 77 36 25 25 39 0 1 9 9 11 51 5 0 32 chain 18933 chr1 249250621 + 96740015 96740393 THE1B 368 + 0 368 130283 88 14 0 16 31 32 41 69 72 119 chain 117227 chr1 249250621 + 96740402 96741952 THE1B-int 1605 + 0 1598 32047 430 0 25 223 21 33 50 36 47 790 chain 89303 chr1 249250621 + 96744164 96745170 L1PA4 6152 - 9 1017 39884 12 0 2 994 chain 27985 chr1 249250621 + 96745170 96745488 L1PA4 6152 + 4840 5157 91485 273 1 0 44 chain 101462 chr1 249250621 + 96766424 96767618 L1PA7 6471 + 5272 6467 36408 351 0 1 76 0 2 757 2 0 8 chain 71468 chr1 249250621 + 96809285 96810173 L1PA8 5853 - 594 1484 47707 13 0 3 56 6 5 171 4 8 136 1 0 203 8 5 290 chain 44951 chr1 249250621 + 96810173 96810771 L1PA8 5853 + 5259 5853 63118 305 1 0 46 2 0 72 11 12 49 1 0 7 14 13 90 chain 5369 chr1 249250621 + 96829734 96829835 MADE1 96 - 0 85 191317 38 25 9 38 chain 33531 chr1 249250621 + 96835392 96835863 MER4A1 472 - 0 472 78348 10 5 4 122 1 0 61 29 7 11 1 22 9 0 1 35 0 1 7 0 3 154 1 0 25 chain 68491 chr1 249250621 + 96844941 96845701 L1PA3long 6157 - 2137 2897 49044 760 chain 193278 chr1 249250621 + 96845701 96847817 L1PA3long 6157 + 4041 6157 19749 2116 chain 195337 chr1 249250621 + 96847823 96850519 L1PB1 5432 + 2536 5228 19551 10 0 2 29 0 5 151 0 1 4 2 1 103 2 0 95 0 2 119 1 0 6 0 1 581 8 10 75 1 2 178 1 2 554 10 0 74 5 6 81 0 1 7 0 1 64 2 0 4 0 3 262 0 1 20 19 21 91 34 31 15 1 0 9 15 9 33 1 0 19 1 0 9 chain 28064 chr1 249250621 + 96857245 96857667 L1MA4 2864 - 702 1130 92774 45 1 0 65 1 3 22 6 7 7 1 0 112 0 1 53 19 22 13 0 1 77 chain 344018 chr1 249250621 + 96894260 96898992 L1PB1 5432 - 9 4736 11782 5 1 0 14 1 0 13 8 7 13 7 6 19 2 0 14 1 0 5 3 1 17 8 0 9 2 0 4 1 0 15 1 0 44 1 0 18 1 0 31 0 4 16 2 0 9 2 0 3 2 0 10 1 0 8 19 0 8 3 14 11 1 2 87 0 2 20 0 3 49 0 12 303 2 0 518 10 11 366 1 4 18 1 0 7 0 1 355 1 0 233 0 10 261 2 1 23 0 1 40 11 10 270 1 2 218 6 3 5 0 3 305 0 1 99 1 0 212 1 3 127 14 10 113 6 10 158 1 0 151 1 0 382 chain 514861 chr1 249250621 + 96898997 96905147 L1PA5 6144 - 0 6142 5685 149 0 5 8 6 1 9 3 4 154 2 1 19 0 1 498 1 0 1104 18 0 135 0 1 596 0 1 871 0 1 270 0 1 5 2 0 900 0 1 238 6 0 468 1 2 222 9 5 35 3 4 9 11 0 6 3 0 6 1 4 242 25 51 115 chain 4781 chr1 249250621 + 96905857 96905923 L1PBa 3878 - 3650 3715 197560 15 1 0 50 chain 5223 chr1 249250621 + 96922591 96922717 L1MC1 2226 - 1990 2106 192799 61 1 0 4 41 33 12 1 0 6 chain 136799 chr1 249250621 + 96934654 96936191 SVA_D 2077 - 0 2077 26679 379 0 2 286 5 494 284 0 40 570 0 9 13 chain 13793 chr1 249250621 + 96944967 96945124 L1PA3long 6157 + 5999 6156 145295 157 chain 17749 chr1 249250621 + 96992210 96992473 LTR8 732 + 479 732 133568 11 10 1 76 16 15 150 chain 26857 chr1 249250621 + 96994055 96994400 THE1B 368 + 0 359 96780 40 0 15 59 0 1 53 1 0 126 1 0 65 chain 53086 chr1 249250621 + 96995263 96995852 L1PA3long 6157 + 5568 6157 56968 589 chain 60151 chr1 249250621 + 96995855 96996591 THE1B-int 1605 + 870 1605 52751 688 1 0 47 chain 20339 chr1 249250621 + 97005913 97006256 THE1B 368 - 0 368 126110 119 41 51 20 13 12 100 7 22 25 1 0 4 1 3 12 chain 25498 chr1 249250621 + 97006603 97006974 L1PB2 3958 - 120 491 102230 13 2 7 43 7 6 20 2 0 68 1 0 64 1 0 30 0 1 41 1 0 29 2 5 5 3 0 39 chain 23278 chr1 249250621 + 97029233 97029505 AluSp 311 + 10 294 114303 88 0 10 172 0 2 12 chain 551337 chr1 249250621 + 97069942 97075956 L1PA2 6032 + 0 6028 1271 1299 0 15 953 0 1 873 0 4 1391 2 1 1484 5 0 7 chain 505987 chr1 249250621 + 97077301 97083546 L1PA6 6164 - 2 6164 6464 9 0 2 196 0 8 1056 2 1 464 42 0 56 0 4 151 0 1 687 1 0 4 0 1 269 5 9 219 6 4 349 4 0 162 0 10 169 1 2 339 93 0 706 0 1 29 1 0 296 0 25 245 3 4 174 1 0 45 4 1 61 16 15 11 1 9 368 chain 3102 chr1 249250621 + 97086527 97086560 MER39 703 - 60 93 222890 33 chain 26238 chr1 249250621 + 97088883 97089262 LTR7 482 - 9 482 99057 167 0 1 13 15 46 23 1 12 60 0 50 65 4 5 31 chain 18741 chr1 249250621 + 97112747 97112958 L1PA5 6144 - 3 214 130849 211 chain 470779 chr1 249250621 + 97116821 97122963 L1PA4 6152 + 11 6152 8009 109 7 21 76 2 1 52 25 26 118 0 11 7 12 1 52 3 0 36 111 116 15 9 3 6 0 6 164 17 0 130 10 0 4 15 0 6 0 1 6 1 0 74 54 57 65 18 9 115 0 1 640 11 10 231 1 3 137 3 2 252 1 4 318 3 5 53 2 3 752 1 2 210 11 12 461 1 2 329 0 9 457 0 1 134 18 22 27 1 2 314 0 1 449 0 5 6 chain 81265 chr1 249250621 + 97145660 97146609 L1PA6 6164 + 5211 6160 43061 949 chain 57978 chr1 249250621 + 97156241 97157305 LTR12 884 + 0 884 53988 25 1 0 331 0 22 33 10 14 139 0 103 109 308 0 108 chain 24526 chr1 249250621 + 97166161 97166539 THE1D 372 + 0 372 107408 49 9 0 81 4 0 5 6 10 20 26 29 178 chain 20755 chr1 249250621 + 97184507 97184750 AluSc5 308 - 43 286 124779 243 chain 26729 chr1 249250621 + 97185429 97185733 AluSp 311 - 6 311 97224 163 0 1 141 chain 13345 chr1 249250621 + 97190267 97190415 L1PA4 6152 + 5996 6144 146909 148 chain 8634 chr1 249250621 + 97205109 97205570 Tigger4a 237 + 1 139 167570 31 5 6 10 324 0 91 chain 4928 chr1 249250621 + 97222254 97222322 L1MC1 2226 + 1979 2047 195954 16 2 0 39 0 2 11 chain 163727 chr1 249250621 + 97227296 97229182 SVA_D 2077 - 0 2077 22844 338 0 10 237 37 0 55 0 49 82 0 1 6 6 33 4 1 0 4 0 1 186 0 138 16 2 1 363 0 1 523 0 3 26 chain 2853 chr1 249250621 + 97227871 97227908 SVA_D 2077 - 900 937 99146 37 chain 4528 chr1 249250621 + 97277516 97277600 Tigger4a 237 - 66 169 200475 24 21 40 39 chain 124649 chr1 249250621 + 97313910 97315486 THE1A-int 1579 + 0 1579 29489 249 0 1 250 8 6 300 0 1 121 1 2 53 6 8 588 chain 5965 chr1 249250621 + 97318609 97318711 L1MA4A 3247 - 2263 2357 185559 68 1 0 8 12 5 13 chain 555568 chr1 249250621 + 97318754 97324912 L1PA3long 6157 - 0 6153 766 66 2 0 1360 8 0 960 1 0 1658 0 3 918 0 3 1185 chain 68513 chr1 249250621 + 97349667 97350412 L1PA4 6152 - 1 746 49033 745 chain 5101 chr1 249250621 + 97357497 97357576 L1MA6 2487 - 2362 2437 194067 7 1 0 30 1 0 4 2 0 34 chain 7745 chr1 249250621 + 97361412 97361510 L1PA8 5853 - 210 305 172625 35 2 0 44 1 0 16 chain 202012 chr1 249250621 + 97361638 97364059 L1PA7 6471 - 15 3273 19063 751 6 3 78 0 2 168 4 5 488 8 6 438 0 1 381 3 841 96 chain 33352 chr1 249250621 + 97367307 97367799 LTR10B 488 + 22 488 78649 23 1 0 107 7 0 68 17 0 108 13 14 110 6 5 18 1 0 13 chain 66338 chr1 249250621 + 97381199 97382047 L1PA8A 6298 + 5405 6256 49934 84 2 1 19 1 0 86 5 7 40 0 1 435 0 1 112 1 2 63 chain 31959 chr1 249250621 + 97382122 97382507 L1PA6 6164 + 5774 6160 80920 359 0 1 26 chain 23077 chr1 249250621 + 97406194 97406496 AluY 311 + 8 296 115258 106 0 1 3 15 0 10 7 6 137 0 1 24 chain 12477 chr1 249250621 + 97412967 97413107 L1PA6 6164 - 12 152 150353 140 chain 51393 chr1 249250621 + 97450416 97451092 L1PA8A 6298 - 8 708 58034 99 0 1 14 18 28 68 0 1 383 9 15 62 0 6 23 chain 44146 chr1 249250621 + 97452377 97452931 MLT2A2 560 + 0 560 64018 161 7 8 34 0 1 149 0 4 203 chain 29185 chr1 249250621 + 97523052 97523424 THE1C 375 + 0 375 88121 185 1 2 126 0 2 60 chain 73027 chr1 249250621 + 97618960 97620026 L1PB1 5432 + 4222 5281 47013 238 0 1 26 0 1 4 6 5 124 3 0 56 0 9 118 0 2 9 0 1 16 12 4 262 18 16 24 1 0 6 1 0 12 21 18 46 2 1 16 2 1 43 chain 89648 chr1 249250621 + 97621856 97622832 L1PA3long 6157 + 5180 6157 39767 838 0 1 138 chain 68559 chr1 249250621 + 97627129 97627873 L1PA3long 6157 - 0 744 49006 744 chain 94132 chr1 249250621 + 97627873 97628899 L1PA3long 6157 + 4332 5358 38319 1026 chain 87374 chr1 249250621 + 97629530 97630989 L1PREC2 3366 + 1768 3037 40624 232 1 0 4 1 2 497 0 2 130 6 7 9 154 0 89 2 1 5 0 1 7 2 0 52 1 0 19 1 0 25 1 0 3 3 0 14 28 21 12 2 0 5 22 17 30 3 0 5 28 14 66 chain 23597 chr1 249250621 + 97659709 97660055 THE1C 375 + 0 347 112599 88 0 1 46 4 0 6 10 14 30 4 0 7 0 5 82 9 8 60 chain 17249 chr1 249250621 + 97668999 97669194 L1PA2 6032 + 5834 6032 134928 152 0 3 43 chain 25409 chr1 249250621 + 97694475 97694788 AluY 311 + 8 311 102636 14 4 0 102 6 0 187 chain 26973 chr1 249250621 + 97720886 97721237 THE1B 368 + 0 368 96364 40 1 16 64 0 1 17 0 4 27 1 0 23 2 0 176 chain 28509 chr1 249250621 + 97721886 97722256 THE1B 368 + 0 368 91151 174 1 0 34 12 11 149 chain 71425 chr1 249250621 + 97732086 97732927 L1PA6 6164 - 2 838 47731 6 4 0 758 1 0 72 chain 3196 chr1 249250621 + 97732927 97732962 L1P2 5180 + 1370 1405 211257 35 chain 63412 chr1 249250621 + 97741808 97742764 L1PA16 3655 + 2691 3588 51277 211 1 0 20 3 2 54 7 4 91 0 3 9 78 27 92 1 0 82 6 4 287 3 0 11 chain 177682 chr1 249250621 + 97751446 97753431 L1PA3long 6157 - 3972 5952 21192 212 0 1 933 6 0 834 chain 357901 chr1 249250621 + 97753431 97757402 L1PA3long 6157 + 2182 6157 11404 2142 5 0 30 0 4 145 1 5 1641 0 1 7 chain 27238 chr1 249250621 + 97757791 97758157 THE1C 375 - 11 375 95467 16 1 0 150 13 12 186 chain 395740 chr1 249250621 + 97783500 97787799 L1PA2 6032 + 1728 6028 10250 3451 0 1 848 chain 51047 chr1 249250621 + 97814904 97815472 L1PA4 6152 - 1 569 58281 568 chain 506907 chr1 249250621 + 97823393 97829515 L1PA6 6164 + 5 6160 6404 153 37 38 260 10 9 322 0 17 623 4 9 16 15 14 409 0 1 337 1 5 179 9 18 151 7 0 616 8 9 180 12 13 568 0 1 457 0 2 872 0 1 101 0 1 424 0 1 14 1 0 210 0 1 115 3 0 8 chain 18684 chr1 249250621 + 97835553 97835766 L1PA8 5853 - 371 585 130985 61 0 1 152 chain 25961 chr1 249250621 + 97835766 97836138 L1PA8 5853 + 5486 5852 100165 35 2 4 39 1 0 104 3 0 14 1 0 18 11 10 30 2 1 19 1 0 92 chain 93417 chr1 249250621 + 97858848 97859918 L1PA5 6144 - 0 1069 38530 9 3 0 418 0 2 640 chain 253094 chr1 249250621 + 97863501 97866438 L1PA5 6144 - 0 2935 16074 11 3 1 64 1 0 505 0 1 940 1 0 399 1 3 5 2 0 918 0 1 87 chain 18106 chr1 249250621 + 97871966 97872171 L1PA7 6471 - 7 212 132581 205 chain 83954 chr1 249250621 + 97873089 97874163 HERVL-int 5654 + 4560 5654 41924 391 1 0 4 0 7 473 1 0 48 0 3 53 16 28 87 chain 32690 chr1 249250621 + 97929047 97929473 THE1B-int 1605 + 0 432 79705 111 0 4 150 5 7 160 chain 27497 chr1 249250621 + 97943157 97943449 AluYb8 318 - 0 292 94662 292 chain 24660 chr1 249250621 + 97984714 97985051 THE1B 368 - 20 368 106670 54 1 0 98 2 0 13 1 0 4 0 1 6 1 0 116 1 16 40 chain 59861 chr1 249250621 + 97986050 97986829 L1PA7 6471 - 11 797 52851 56 5 12 70 0 7 7 8 1 295 0 2 5 8 6 325 chain 84050 chr1 249250621 + 97986829 97987840 L1PA7 6471 + 4669 5686 41884 165 5 10 530 1 0 6 0 2 20 0 2 217 2 0 65 chain 3235 chr1 249250621 + 98021648 98021687 MER96 175 - 41 80 220324 39 chain 87163 chr1 249250621 + 98021910 98022847 L1PA2 6032 - 0 937 40705 937 chain 70156 chr1 249250621 + 98049351 98050139 L1PA4 6152 - 381 1173 48323 199 1 0 93 0 1 170 0 4 325 chain 32795 chr1 249250621 + 98050139 98050500 L1PA4 6152 + 5775 6136 79539 361 chain 16392 chr1 249250621 + 98054858 98055137 THE1C 375 + 30 339 137232 45 0 21 17 0 1 37 1 2 10 23 24 41 14 21 9 1 0 81 chain 19013 chr1 249250621 + 98070800 98071147 THE1D 372 + 0 332 130080 12 1 3 36 32 13 102 51 52 32 0 1 81 chain 187330 chr1 249250621 + 98107015 98109646 L1PA7 6471 + 4169 6467 20307 37 1 0 419 1 0 183 0 2 80 0 3 52 0 4 6 4 5 350 344 0 197 4 6 26 0 2 7 2 0 69 5 4 374 0 2 470 chain 26772 chr1 249250621 + 98108152 98108440 L1PA3long 6157 + 5862 6150 97081 288 chain 30932 chr1 249250621 + 98149599 98150035 L1PA10 4194 - 1607 2048 82629 38 1 0 4 13 14 57 7 8 165 5 9 146 chain 115720 chr1 249250621 + 98150044 98151615 L1PA10 4194 + 2583 4161 32553 80 33 25 9 0 3 501 0 1 4 1 0 13 0 1 42 0 1 70 0 1 62 1 0 29 0 1 214 7 9 41 3 4 9 4 7 84 0 4 174 42 45 99 3 0 34 1 0 11 chain 26606 chr1 249250621 + 98158571 98158873 AluY 311 + 7 309 97633 302 chain 77345 chr1 249250621 + 98170700 98171556 L1PA4 6152 - 11 873 44805 249 1 0 583 1 8 22 chain 28241 chr1 249250621 + 98172853 98173158 L1PA2 6032 - 5 310 92143 305 chain 21598 chr1 249250621 + 98291094 98291337 L1PA5 6144 + 5901 6143 121774 101 1 0 141 chain 5852 chr1 249250621 + 98292542 98292647 UCON16 145 - 25 128 186671 38 1 2 12 4 2 34 2 1 14 chain 38122 chr1 249250621 + 98295314 98295774 L1PA6 6164 - 2 467 71951 35 0 5 425 chain 28659 chr1 249250621 + 98304119 98304435 AluYb9 318 + 0 311 90490 299 5 0 12 chain 7039 chr1 249250621 + 98317459 98317541 L1PA6 6164 + 6070 6152 177182 82 chain 15502 chr1 249250621 + 98347393 98347575 L1PA3long 6157 + 5973 6157 139893 35 1 5 66 2 0 78 chain 26984 chr1 249250621 + 98353261 98353632 THE1C 375 + 0 375 96337 66 1 0 59 3 0 58 2 3 15 0 3 160 0 4 7 chain 27343 chr1 249250621 + 98381743 98382068 L1PA4 6152 - 1 332 95131 144 5 11 176 chain 7087 chr1 249250621 + 98420645 98420969 MLT1A0 366 + 2 350 176849 21 218 242 85 chain 45929 chr1 249250621 + 98436979 98437474 L1PA2 6032 + 5536 6031 62102 495 chain 21670 chr1 249250621 + 98446919 98447204 L1PA7 6471 - 1 279 121496 154 1 0 114 6 0 10 chain 58179 chr1 249250621 + 98574179 98574830 L1PA2 6032 - 680 1331 53884 5 2 0 334 0 1 121 0 1 189 chain 64854 chr1 249250621 + 98574830 98575552 L1PA2 6032 + 5313 6031 50630 256 4 0 462 chain 18870 chr1 249250621 + 98589385 98589727 THE1B 368 + 0 366 130458 44 5 20 58 33 33 17 1 0 24 3 0 5 29 42 123 chain 4354 chr1 249250621 + 98604842 98604893 L1PA16 3655 - 118 169 202534 51 chain 9532 chr1 249250621 + 98614172 98614329 L1PB3 3668 + 3386 3527 162919 4 0 1 87 19 4 21 2 0 24 chain 102372 chr1 249250621 + 98618530 98619671 L1PA4 6152 - 1 1142 36175 1141 chain 1869 chr1 249250621 + 98619672 98620117 L1PA4 6152 + 4564 5009 56380 445 chain 113240 chr1 249250621 + 98620427 98622085 L1PREC2 3366 + 1326 2963 33301 189 0 3 561 0 2 345 9 12 35 23 16 130 9 14 55 6 0 23 3 0 41 2 0 9 0 1 35 6 10 43 90 72 22 11 8 11 chain 166708 chr1 249250621 + 98625800 98627732 L1PA5 6144 + 3550 6130 22431 131 0 1 178 0 1 194 0 10 101 0 624 638 0 11 558 2 1 4 0 1 41 0 1 85 chain 10402 chr1 249250621 + 98631986 98632102 L1PA4 6152 - 429 545 158681 116 chain 1764 chr1 249250621 + 98632102 98632522 L1PA4 6152 + 5727 6152 56380 414 0 5 6 chain 268312 chr1 249250621 + 98677614 98680581 L1PA3long 6157 - 3 2973 15272 335 0 1 182 4 5 330 0 1 2116 chain 3098 chr1 249250621 + 98685475 98685509 MER5A1 166 + 43 77 222957 34 chain 324762 chr1 249250621 + 98699472 98703924 L1PA11 4918 + 3 4508 12401 23 0 5 11 2 0 36 4 1 36 22 21 45 1 0 32 9 6 250 7 16 133 0 1 192 0 1 119 1 4 420 6 5 11 8 17 35 0 1 237 0 1 151 0 1 433 0 6 11 2 3 34 0 1 13 19 19 29 1 5 327 6 13 10 4 11 259 0 2 208 0 1 34 1 4 297 0 2 5 6 5 307 19 21 117 0 1 338 1 0 34 0 1 13 0 3 12 19 16 61 12 10 9 1 0 19 chain 4258 chr1 249250621 + 98709514 98709566 MER3 215 - 125 177 203763 52 chain 30298 chr1 249250621 + 98715223 98715613 THE1B-int 1605 + 38 429 83919 263 1 0 27 5 7 94 chain 89918 chr1 249250621 + 98715619 98716637 L1PA4 6152 - 9 1035 39680 145 1 0 681 0 9 191 chain 3803 chr1 249250621 + 98719739 98719780 L1HS 6032 + 5991 6032 210337 41 chain 41133 chr1 249250621 + 98736946 98737498 L1PA11 4918 - 1252 1809 67739 227 6 7 79 3 4 85 6 5 54 0 4 92 chain 13366 chr1 249250621 + 98737505 98737673 L1PA11 4918 + 3670 3838 146832 168 chain 34095 chr1 249250621 + 98737678 98738519 L1PA11 4918 + 3844 4317 77481 200 386 0 52 0 13 75 0 1 45 3 7 80 chain 17313 chr1 249250621 + 98737879 98738198 THE1D 372 + 0 312 134749 51 9 0 16 11 12 87 58 59 87 chain 15818 chr1 249250621 + 98738534 98738803 L1PA11 4918 + 4328 4578 138903 147 2 0 13 1 0 20 4 0 9 8 3 15 8 4 15 1 0 12 3 1 11 chain 49134 chr1 249250621 + 98742859 98743506 PABL_A 660 + 0 660 59646 56 0 4 225 6 7 117 0 4 100 1 2 48 1 0 10 0 1 53 0 3 30 chain 61505 chr1 249250621 + 98750339 98751061 L1PA6 6164 - 2 724 52115 722 chain 104503 chr1 249250621 + 98751061 98752345 L1PA6 6164 + 4145 5439 35619 156 0 2 136 17 21 183 6 0 136 0 1 535 1 8 71 0 2 43 chain 72554 chr1 249250621 + 98766591 98767421 L1PA4 6152 - 0 831 47241 15 0 1 122 0 7 10 7 0 179 0 1 445 1 0 51 chain 47352 chr1 249250621 + 98767421 98767948 L1P1 4361 + 3348 3875 60873 527 chain 22807 chr1 249250621 + 98776030 98776399 L1MA2 4263 + 3753 4105 116543 43 13 10 45 3 0 6 1 0 94 16 14 70 1 0 23 15 8 39 chain 29477 chr1 249250621 + 98782878 98783187 AluYb8 318 - 9 318 86731 309 chain 29004 chr1 249250621 + 98784828 98785198 MLT2A1 477 + 4 383 88968 135 1 3 27 4 1 9 0 1 25 0 1 142 3 11 24 chain 3978 chr1 249250621 + 98786890 98786968 Tigger3b 1229 - 1015 1106 207715 9 4 0 16 3 8 23 1 13 22 chain 49783 chr1 249250621 + 98830625 98831172 L1PA4 6152 - 269 816 59172 547 chain 22298 chr1 249250621 + 98831172 98831423 L1PA4 6152 + 5892 6143 118918 251 chain 5385 chr1 249250621 + 98838944 98839022 MADE1 96 - 2 96 191136 49 7 23 22 chain 7230 chr1 249250621 + 98907758 98908064 L1MC1 2226 + 1919 2196 175888 47 30 26 31 67 58 5 2 0 12 68 55 30 1 0 13 chain 17402 chr1 249250621 + 98910476 98910691 L1PA5 6144 - 12 244 134500 136 1 0 5 2 20 71 chain 18900 chr1 249250621 + 98962945 98963308 THE1B 368 + 2 368 130366 104 11 12 51 79 82 55 2 1 61 chain 5039 chr1 249250621 + 98964778 98964842 L1MEf 1413 - 402 465 194735 22 1 0 41 chain 50686 chr1 249250621 + 98966420 98967067 LTR12 884 - 0 884 58514 157 0 103 248 2 0 15 0 132 20 0 1 184 6 9 15 chain 47631 chr1 249250621 + 98967105 98967784 MER50 708 + 0 685 60746 48 11 15 222 7 18 124 0 1 53 1 0 123 13 5 19 14 13 44 chain 160959 chr1 249250621 + 98977339 98979217 SVA_D 2077 - 0 2077 23200 362 2 1 261 1 0 8 0 1 21 0 49 20 1 0 98 48 0 208 1 0 5 0 1 38 2 1 17 0 83 136 0 116 616 0 2 33 chain 3337 chr1 249250621 + 98978113 98978161 SVA_D 2077 - 948 1048 106547 31 0 1 12 0 51 5 chain 8729 chr1 249250621 + 98984183 98984301 L1MA3 4352 + 45 162 167030 108 1 0 9 chain 74549 chr1 249250621 + 98991244 98992324 MER11A 1151 - 0 1151 46239 82 1 3 78 6 7 60 0 1 36 18 0 21 45 28 44 4 0 101 5 6 145 0 1 92 5 6 107 1 0 6 0 2 31 4 0 60 0 4 30 0 3 42 1 100 55 chain 67570 chr1 249250621 + 99002229 99003024 L1PA7 6471 - 12 808 49410 314 0 1 481 chain 18157 chr1 249250621 + 99009055 99009249 L1PA3long 6157 + 5963 6157 132444 194 chain 74815 chr1 249250621 + 99018264 99019269 L1P2 5180 + 388 1421 46107 120 1 0 5 7 2 204 7 5 63 1 0 5 1 0 135 0 25 65 1 0 110 8 22 272 chain 19106 chr1 249250621 + 99024486 99024711 L1PA5 6144 + 5919 6144 129801 225 chain 3625 chr1 249250621 + 99042560 99042601 L1PA6 6164 + 6119 6160 213238 41 chain 24584 chr1 249250621 + 99044944 99045449 L1PA15 4387 - 31 497 107068 27 5 0 14 9 7 11 10 16 11 20 17 36 2 1 8 4 0 23 1 0 55 1 0 25 2 1 70 15 11 12 10 1 11 22 9 58 1 0 42 chain 8374 chr1 249250621 + 99048128 99048292 L1PB4 2604 - 715 880 169002 37 56 57 71 chain 7457 chr1 249250621 + 99049135 99049292 Tigger2b_Pri 1066 + 169 330 174416 11 0 1 78 44 48 19 1 0 4 chain 101734 chr1 249250621 + 99049303 99050647 L1PA10 4194 + 2817 4161 36334 148 15 16 22 0 1 623 0 1 446 0 1 41 3 0 34 1 0 11 chain 396190 chr1 249250621 + 99054217 99058600 L1PA2 6032 + 11 6032 10234 611 0 1 118 0 1 1338 0 1 1306 0 1637 155 1 0 681 0 1 166 2 0 5 chain 29359 chr1 249250621 + 99061351 99061757 L1MA3 4352 - 659 1059 87243 121 13 6 163 0 1 15 1 0 35 0 1 58 chain 15046 chr1 249250621 + 99068029 99068193 L1PA4 6152 + 5987 6152 141188 9 0 1 155 chain 182108 chr1 249250621 + 99078739 99080763 L1PA3long 6157 + 4133 6157 20770 2024 chain 14207 chr1 249250621 + 99082058 99082287 MER1B 344 + 102 311 143855 165 42 22 22 chain 436301 chr1 249250621 + 99084817 99090313 L1PA7 6471 - 7 5540 9159 685 8 9 66 1 4 65 3 4 10 1 0 22 3 8 24 0 4 13 0 1 215 0 13 91 0 1 280 2 0 280 0 4 721 11 10 318 5 4 121 1 0 5 1 2 217 0 2 565 1 3 588 2 0 5 4 6 441 0 2 69 0 1 140 0 1 229 7 8 276 chain 113341 chr1 249250621 + 99094732 99095993 L1PA4 6152 + 4881 6143 33267 604 0 1 657 chain 6650 chr1 249250621 + 99113127 99113201 MLT1A0 366 - 28 102 180093 74 chain 29858 chr1 249250621 + 99138198 99138512 AluYb8 318 + 0 314 85252 314 chain 16824 chr1 249250621 + 99143590 99143993 MSTB 430 - 15 430 136051 55 4 3 48 166 179 130 chain 123557 chr1 249250621 + 99144957 99146542 THE1B-int 1605 - 1 1605 29856 71 0 1 102 0 3 95 1 2 189 4 0 393 13 4 287 0 25 416 0 2 14 chain 27207 chr1 249250621 + 99159645 99159946 AluYk4 311 + 1 302 95573 301 chain 4775 chr1 249250621 + 99186673 99186790 Tigger4a 237 - 119 237 197647 22 46 47 49 chain 263291 chr1 249250621 + 99192815 99196412 L1PA10 4194 + 329 4041 15522 6 2 0 19 1 0 9 1 0 9 0 3 7 1 0 13 4 0 3 1 0 5 3 0 14 0 1 64 13 7 114 2 0 81 14 5 69 30 31 416 0 1 233 6 93 263 1 2 35 0 4 386 0 4 153 14 25 225 0 1 20 4 0 12 0 1 6 8 31 124 1 0 4 0 1 132 0 2 509 0 1 140 7 11 25 0 1 101 0 1 83 5 6 94 0 2 20 1 0 84 chain 5698 chr1 249250621 + 99239196 99239284 MLT1B 390 - 7 134 188132 23 10 49 55 chain 5317 chr1 249250621 + 99241642 99241741 MER47A 366 - 223 323 191855 35 23 24 41 chain 472275 chr1 249250621 + 99249191 99255721 L1PA8A 6298 + 30 6290 7964 26 1 0 11 3 0 3 2 0 8 6 1 21 3 0 19 1 0 4 2 0 10 21 15 9 2 1 10 1 0 9 1 0 12 2 0 15 8 5 12 1 0 8 2 1 5 1 0 6 4 3 13 14 11 38 7 6 18 10 0 71 0 6 19 1 0 6 4 2 77 1 0 261 28 126 221 27 9 11 1 3 120 0 3 230 1 0 562 2 1 117 334 0 155 0 4 167 11 0 212 5 15 20 0 10 211 0 4 432 1 0 8 0 4 452 0 1 56 5 4 134 4 6 21 0 1 263 2 3 464 1 3 65 0 1 43 0 2 338 0 1 214 9 10 152 0 1 45 0 1 73 13 7 126 0 1 385 chain 18192 chr1 249250621 + 99266379 99266608 L1PA16 3655 - 1373 1602 132352 229 chain 29946 chr1 249250621 + 99266618 99267054 LTR7 482 - 8 482 84980 32 24 26 92 0 10 20 0 31 148 21 15 48 0 1 51 chain 280654 chr1 249250621 + 99268296 99271968 HERVH-int 3825 - 0 3825 14608 259 11 15 96 0 1 21 24 25 328 0 3 349 0 1 377 0 4 48 0 1 195 88 97 71 2 1 120 33 34 202 5 0 35 0 1 5 1 0 79 0 2 25 9 0 200 16 1 132 0 2 195 0 1 120 1 0 27 44 194 26 1 0 47 9 12 139 2 1 9 0 3 321 chain 30478 chr1 249250621 + 99271976 99272414 LTR7 482 - 6 482 83474 43 15 17 92 0 10 53 0 31 115 21 15 48 0 1 51 chain 114847 chr1 249250621 + 99274238 99275768 THE1C-int 1605 - 1 1589 32833 40 0 1 63 0 6 316 29 27 699 0 7 111 11 12 140 0 54 50 10 0 5 0 1 56 chain 11310 chr1 249250621 + 99276167 99276608 L1PA15-16 3068 + 2443 2800 155033 15 5 1 19 1 0 12 1 0 8 1 0 8 1 0 28 0 1 15 1 0 4 1 0 14 1 0 10 1 0 5 1 0 16 3 0 3 4 0 7 121 83 15 75 50 32 2 0 11 chain 49607 chr1 249250621 + 99324893 99325445 L1PA5 6144 - 488 1040 59315 552 chain 40842 chr1 249250621 + 99325445 99325928 L1PA5 6144 + 5659 6144 68112 322 8 12 6 4 0 131 1 3 11 chain 9013 chr1 249250621 + 99327653 99327783 MER85 139 - 0 139 165526 29 1 0 11 7 17 82 chain 15826 chr1 249250621 + 99331057 99331417 THE1B 368 - 0 368 138868 60 1 0 56 16 24 14 107 107 38 7 8 61 chain 19615 chr1 249250621 + 99332980 99333339 THE1B 368 - 2 368 128349 54 7 6 56 68 75 6 1 0 52 8 10 107 chain 508156 chr1 249250621 + 99341194 99347286 L1PA6 6164 - 5 6164 6309 300 6 7 70 0 19 65 0 8 375 1 0 62 0 8 512 1 0 367 0 4 840 0 1 719 0 4 605 4 0 249 0 1 206 0 1 106 0 1 814 1 18 271 0 2 14 11 10 97 81 88 315 chain 7577 chr1 249250621 + 99350196 99350513 MLT1B 390 + 0 341 173687 20 4 0 9 0 1 17 198 225 69 chain 4444 chr1 249250621 + 99421925 99422015 L1PB1 5432 - 10 94 201406 4 1 0 14 1 0 13 1 0 19 6 5 21 2 0 8 chain 37790 chr1 249250621 + 99422486 99422901 L1PA3long 6157 + 5741 6156 72431 415 chain 76878 chr1 249250621 + 99448644 99449501 L1PA2 6032 - 2 857 45042 709 4 1 70 1 0 63 0 1 6 0 1 4 chain 24903 chr1 249250621 + 99460440 99460807 L1PA15 4387 + 3892 4253 105327 8 0 3 30 1 0 171 1 0 27 3 2 52 2 1 21 4 0 9 2 1 36 chain 63157 chr1 249250621 + 99491030 99491766 L1PA4 6152 - 0 735 51377 6 0 5 149 7 0 154 0 1 420 chain 33832 chr1 249250621 + 99491766 99492147 L1PA4 6152 + 5009 5395 77888 135 0 1 153 0 4 93 chain 4077 chr1 249250621 + 99495632 99495678 U5 65 + 0 46 206223 46 chain 22245 chr1 249250621 + 99497491 99497874 MSTA 426 + 0 424 119140 25 10 9 74 38 62 31 8 5 8 0 2 20 2 0 63 0 20 23 1 2 80 chain 439134 chr1 249250621 + 99505423 99511589 L1PA8 5853 + 50 5853 9077 22 75 36 81 12 0 14 0 1 102 12 0 311 0 4 267 0 1 235 0 1 45 0 1 20 5 6 533 0 1 20 0 1 274 19 0 59 0 3 358 0 2 183 0 1 45 7 9 195 2 1 47 0 1 4 3 7 36 6 21 156 157 61 179 1 0 329 2 14 498 0 1 285 0 1 193 2 3 34 299 0 246 1 0 7 1 4 74 0 3 478 1 0 5 15 73 36 2 1 9 7 13 5 2 0 37 1 0 17 2 0 93 chain 11903 chr1 249250621 + 99508577 99508712 LTR5B 1012 + 877 1012 152585 135 chain 130392 chr1 249250621 + 99543526 99544985 SVA_C 1631 - 8 1556 27990 587 0 91 40 1 0 454 1 0 376 chain 20375 chr1 249250621 + 99553802 99554134 THE1B 368 + 0 356 125976 44 0 15 110 2 0 6 3 4 19 14 16 10 20 28 104 chain 51290 chr1 249250621 + 99557742 99558502 L1PREC2 3366 - 415 1153 58120 16 8 0 7 0 7 16 5 0 17 29 21 13 3 0 4 1 0 7 0 1 34 1 0 56 2 0 41 1 0 112 0 1 4 1 0 9 1 0 89 0 1 112 1 0 170 chain 17297 chr1 249250621 + 99563371 99563580 L1PA8 5853 + 5354 5564 134791 167 0 1 42 chain 21467 chr1 249250621 + 99563581 99563876 L1PA8 5853 + 5564 5853 122267 44 2 0 74 1 0 11 11 10 37 2 1 19 1 0 93 chain 30481 chr1 249250621 + 99564421 99564777 L1PA7 6471 - 16 373 83467 318 0 1 38 chain 22384 chr1 249250621 + 99564779 99565051 L1PA7 6471 + 5832 6105 118565 118 0 1 154 chain 7623 chr1 249250621 + 99567343 99567427 L1PA3long 6157 - 901 985 172842 84 chain 82951 chr1 249250621 + 99567427 99568340 L1PA3long 6157 + 5228 6141 42358 913 chain 233805 chr1 249250621 + 99577730 99580555 L1PA7 6471 - 11 2829 17097 53 0 1 169 0 2 173 4 0 365 2 0 76 2 0 40 12 14 241 2 0 264 0 3 39 1 2 69 1 0 277 0 4 47 1 0 152 0 1 374 0 1 257 10 0 194 chain 60620 chr1 249250621 + 99603659 99604419 MER4E1 777 + 0 770 52512 14 4 7 109 1 0 61 1 2 49 1 0 298 2 10 220 chain 4941 chr1 249250621 + 99606131 99606191 MER34C_ 573 + 458 518 195790 60 chain 500283 chr1 249250621 + 99621719 99628250 L1PA7 6471 - 1 6471 6820 189 1 0 144 0 1 299 0 8 206 4 0 6 12 15 403 0 1 249 2 0 415 0 1 553 1 2 405 0 3 57 107 7 229 6 22 341 0 1 4 1 0 16 0 4 251 1 2 553 0 1 51 1 0 111 17 10 61 1 2 284 0 1 56 2 11 221 0 19 225 5 6 122 4 0 6 4 8 140 22 27 144 3 0 104 1 0 27 52 38 113 65 61 234 chain 21997 chr1 249250621 + 99630372 99630727 THE1A 353 + 0 352 120245 15 3 1 31 17 18 15 15 14 18 0 1 6 7 6 91 1 0 136 chain 22807 chr1 249250621 + 99639685 99639962 AluSp 311 + 10 287 116542 116 1 0 130 0 1 30 chain 21027 chr1 249250621 + 99649689 99649988 THE1B 368 - 61 368 123824 58 1 7 6 3 0 4 1 0 18 9 16 29 1 0 169 chain 58158 chr1 249250621 + 99652902 99653596 L1PA7 6471 + 5771 6469 53896 226 1 3 136 0 1 269 0 1 62 chain 98711 chr1 249250621 + 99665492 99666674 L1PA6 6164 - 3 1188 37098 7 2 0 135 10 11 438 2 0 247 0 6 341 chain 71605 chr1 249250621 + 99678993 99679756 L1HS 6032 - 3 766 47654 763 chain 27648 chr1 249250621 + 99707662 99708039 L1PB2 3958 - 120 507 94214 63 1 0 56 0 1 37 1 0 64 1 0 63 9 21 82 chain 13219 chr1 249250621 + 99712046 99712214 AluSp 311 + 28 196 147394 114 3 0 6 1 4 44 chain 33668 chr1 249250621 + 99725827 99726246 L1PA7 6471 - 17 447 78147 145 0 1 82 3 1 140 1 13 48 chain 41668 chr1 249250621 + 99734493 99734987 L1PA7 6471 - 10 505 67069 153 0 1 341 chain 58149 chr1 249250621 + 99752494 99753210 L1PA8A 6298 - 6 719 53903 196 0 1 123 5 1 392 chain 2855 chr1 249250621 + 99754296 99754356 L1MA4 2864 + 2783 2835 227762 26 16 8 18 chain 4188 chr1 249250621 + 99755283 99755383 L1PA12 2803 + 1319 1405 204728 12 15 7 29 5 1 15 2 0 22 chain 38606 chr1 249250621 + 99768087 99768511 L1PA3long 6157 - 15 439 71286 424 chain 3630 chr1 249250621 + 99778436 99778478 MADE1 96 - 54 96 213155 42 chain 20245 chr1 249250621 + 99797350 99797712 THE1C 375 + 0 375 126396 101 12 13 59 58 69 30 0 2 5 3 0 49 1 3 44 chain 2837 chr1 249250621 + 99803291 99803498 L1P3 4156 - 14 218 56328 29 1 0 6 2 0 169 chain 277132 chr1 249250621 + 99803606 99806721 L1PA4 6152 - 13 3221 14802 498 0 82 1889 0 1 159 0 1 69 0 3 260 1 0 148 0 7 91 chain 7032 chr1 249250621 + 99806721 99807234 L1P3 4156 - 218 735 56328 263 0 1 123 0 4 64 2 1 61 chain 166861 chr1 249250621 + 99807243 99809264 L1PA7 6471 + 4448 6470 22412 576 0 5 585 0 3 60 16 3 18 0 2 213 0 1 56 0 2 438 0 1 59 chain 106826 chr1 249250621 + 99818793 99819978 L1PA4 6152 - 62 1246 34999 706 1 0 478 chain 149879 chr1 249250621 + 99819978 99821690 L1P1 4361 + 884 2594 24625 150 4 3 187 7 6 1364 chain 34680 chr1 249250621 + 99839732 99840190 LTR71A 459 + 0 459 76654 30 1 2 237 3 5 164 9 7 14 chain 28535 chr1 249250621 + 99843752 99844050 AluYd8 298 + 0 298 91028 298 chain 3411 chr1 249250621 + 99845700 99845736 L1PA7 6471 + 6240 6276 216911 36 chain 13701 chr1 249250621 + 99845746 99845928 L1PA7 6471 + 6287 6465 145597 171 4 0 7 chain 48774 chr1 249250621 + 99847035 99847560 L1PA2 6032 + 5506 6031 59893 525 chain 41071 chr1 249250621 + 99848148 99848633 L1PA7 6471 - 6 485 67809 8 6 0 471 chain 92079 chr1 249250621 + 99854094 99855076 L1HS 6032 - 0 982 38912 982 chain 128835 chr1 249250621 + 99855076 99856448 L1HS 6032 + 3666 5051 28353 290 0 13 1082 chain 31536 chr1 249250621 + 99858564 99859002 MLT2A1 477 + 0 471 81591 164 12 9 6 0 1 25 0 1 176 24 58 31 chain 552515 chr1 249250621 + 99865380 99871528 L1PA3long 6157 - 0 6157 1127 1949 0 2 685 0 1 815 0 5 154 0 1 2113 0 1 114 1 0 317 chain 178904 chr1 249250621 + 99876148 99878327 L1PA8A 6298 - 8 2187 21083 57 4 1 44 5 6 689 8 7 195 1 2 88 1 0 635 0 4 71 1 0 380 chain 63192 chr1 249250621 + 99909751 99910550 L1PA7 6471 - 258 1082 51362 109 7 9 8 0 9 66 0 2 312 0 2 63 4 10 20 7 11 203 chain 24803 chr1 249250621 + 99915387 99915697 AluY 311 + 11 307 105872 29 1 0 93 8 1 27 1 0 137 5 0 9 chain 72327 chr1 249250621 + 99915697 99916818 L1MA3 4352 + 3250 4352 47322 36 1 14 70 0 3 23 8 7 331 5 4 166 0 1 153 81 61 63 6 1 75 2 0 24 2 1 5 1 0 29 1 0 11 1 0 4 6 3 17 chain 106844 chr1 249250621 + 99973119 99975021 SVA_B 1603 + 0 1603 35020 12 26 0 10 9 55 40 0 13 71 0 1 87 2 1 303 7 6 71 0 3 4 39 0 49 36 0 59 111 0 41 152 0 23 16 103 18 21 24 76 71 1 28 16 0 504 chain 39320 chr1 249250621 + 99975066 99975519 LTR7 482 + 0 482 70297 87 1 0 35 1 0 108 0 31 221 chain 294870 chr1 249250621 + 99975521 99979218 HERVH-int 3825 + 0 3825 13712 212 0 11 33 0 5 271 5 0 38 1 0 10 1 0 10 4 0 13 71 1 15 1 0 11 4 42 24 2 1 28 43 0 6 41 0 48 1 0 444 15 0 462 4 31 147 0 18 1239 8 218 345 0 2 140 chain 38054 chr1 249250621 + 99980478 99980923 LTR7 482 + 0 482 72054 91 0 3 136 0 31 116 0 1 11 0 2 91 chain 5662 chr1 249250621 + 99980966 99981110 L1MA5A 2387 + 2238 2359 188459 18 1 0 39 1 0 7 34 15 8 0 1 4 2 0 9 2 1 19 chain 126712 chr1 249250621 + 99986019 99987435 L1PA4 6152 + 4735 6152 28878 431 3 0 132 0 4 850 chain 3188 chr1 249250621 + 100005672 100005714 MLT1C 463 + 374 417 221162 36 0 1 6 chain 126514 chr1 249250621 + 100019347 100021052 L1PB3 3668 + 1833 3500 28940 43 5 6 227 8 0 140 7 3 90 0 1 256 0 1 68 1 0 87 2 1 104 0 1 96 0 1 30 10 8 7 7 0 82 2 1 189 1 0 15 1 0 96 2 0 4 0 1 87 20 4 18 chain 87220 chr1 249250621 + 100029035 100030012 L1PA4 6152 + 5182 6151 40682 836 8 0 133 chain 44861 chr1 249250621 + 100047018 100047737 L1PA14 3548 + 2767 3485 63218 4 0 1 166 10 8 7 2 0 47 3 19 95 23 17 6 1 0 29 0 1 54 1 0 109 1 0 12 5 1 36 4 2 11 1 0 6 0 9 7 1 0 42 18 11 18 chain 19282 chr1 249250621 + 100051971 100052215 AluSg 306 + 38 288 129280 229 4 10 11 chain 96019 chr1 249250621 + 100052828 100054098 MER41-int 2638 - 2 1275 37817 181 21 10 33 0 5 22 3 0 338 0 2 120 0 3 27 21 19 190 7 2 16 1 0 89 0 9 20 0 1 57 0 4 116 0 1 8 chain 10427 chr1 249250621 + 100054187 100054336 MER41B 635 - 0 150 158574 17 11 12 121 chain 24324 chr1 249250621 + 100063316 100063575 L1PA3long 6157 + 5898 6157 108527 259 chain 8741 chr1 249250621 + 100081133 100081426 L1MC1 2226 + 1864 2129 166968 12 18 12 29 1 0 33 3 0 9 15 15 6 3 0 15 13 11 39 70 58 19 1 0 7 chain 24640 chr1 249250621 + 100202047 100202341 L1PA4 6152 + 5863 6152 106785 273 4 1 9 2 0 6 chain 47957 chr1 249250621 + 100217581 100218450 Tigger1 2417 - 1630 2358 60518 172 9 15 40 3 7 247 1 4 26 25 31 52 0 6 10 1 0 4 176 11 103 chain 73752 chr1 249250621 + 100223930 100224961 MER11A 1151 + 0 1144 46647 55 0 99 22 8 0 44 7 11 61 8 4 83 1 3 58 5 6 92 0 1 145 5 6 131 8 41 22 18 0 37 0 1 72 0 1 149 chain 9680 chr1 249250621 + 100232799 100232913 LTR8 732 - 7 121 162193 114 chain 76844 chr1 249250621 + 100259110 100260111 LTR5B 1012 - 0 1012 45060 395 33 34 95 1 0 114 10 9 25 1 0 198 1 14 128 chain 335810 chr1 249250621 + 100260165 100264300 L1PA7 6471 - 10 4158 12004 140 1 0 13 0 1 94 13 12 407 1 2 92 0 2 77 2 0 6 0 1 8 0 4 478 39 15 110 0 16 401 1 5 6 1 0 647 10 11 49 0 2 309 0 4 63 3 2 37 0 4 810 0 1 55 9 11 253 chain 2811 chr1 249250621 + 100268815 100268845 MLT2B4 540 - 510 540 228618 30 chain 9432 chr1 249250621 + 100276608 100276981 MLT1A0 366 + 0 354 163398 23 0 204 10 230 7 110 chain 133375 chr1 249250621 + 100288477 100289982 SVA_D 2077 + 0 2077 27349 315 0 1 224 0 40 188 0 40 108 2 491 37 0 1 6 1 2 624 chain 14394 chr1 249250621 + 100295782 100295960 L1PA3long 6157 + 5990 6157 143225 160 11 0 7 chain 27938 chr1 249250621 + 100298843 100299152 AluYk11 308 + 0 306 93212 301 3 0 5 chain 16404 chr1 249250621 + 100299717 100300065 L1PB1 5432 + 5114 5430 137193 24 1 0 4 3 2 14 5 1 8 2 0 52 1 0 16 2 1 44 1 0 10 30 18 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 23 2 0 5 0 1 4 1 0 4 chain 70272 chr1 249250621 + 100301389 100302324 LTR5_Hs 974 - 0 974 48281 43 5 11 70 8 20 47 7 7 97 3 5 14 0 1 24 10 9 88 0 11 65 0 4 446 0 4 8 chain 26591 chr1 249250621 + 100302811 100303104 AluSp 311 + 0 296 97693 91 0 3 202 chain 27423 chr1 249250621 + 100305915 100306269 THE1B 368 + 0 368 94898 44 1 16 48 1 0 12 0 1 55 1 0 192 chain 41166 chr1 249250621 + 100310618 100311114 MER9a1 513 - 0 497 67690 207 0 1 289 chain 121871 chr1 249250621 + 100322017 100323420 SVA_C 1631 - 18 1625 30422 334 0 3 258 1 0 8 1 0 8 2 0 31 0 213 698 12 7 28 0 1 8 4 0 10 chain 24192 chr1 249250621 + 100332377 100332663 AluSp 311 - 15 300 109264 164 1 0 121 chain 76197 chr1 249250621 + 100368693 100369560 L1PA5 6144 - 1 895 45363 8 2 0 106 0 1 677 0 28 74 chain 3575 chr1 249250621 + 100371007 100371045 L1MD2 1676 - 688 726 214049 38 chain 4135 chr1 249250621 + 100378828 100378881 MER33 330 - 152 206 205425 24 0 1 29 chain 6884 chr1 249250621 + 100402238 100402322 AluSp 311 + 202 287 178322 52 0 1 32 chain 5076 chr1 249250621 + 100403800 100403860 MER34A1 583 + 0 60 194344 60 chain 6089 chr1 249250621 + 100417056 100417210 THE1C 375 - 214 375 184497 44 60 70 28 1 0 6 2 0 13 chain 39195 chr1 249250621 + 100424864 100425382 LTR6B 557 + 0 557 70465 22 7 35 15 1 16 313 6 0 83 9 10 6 0 1 56 chain 5330 chr1 249250621 + 100425773 100425837 LTR39 781 - 200 264 191725 64 chain 42003 chr1 249250621 + 100425846 100426667 L1PA4 6152 + 5643 6141 66618 371 0 1 9 325 0 33 0 1 42 0 1 33 1 0 7 chain 29327 chr1 249250621 + 100426240 100426550 AluYa5 310 - 0 310 87406 310 chain 12496 chr1 249250621 + 100429877 100430042 LTR23 429 - 23 195 150261 23 0 6 98 1 2 43 chain 5004 chr1 249250621 + 100432523 100432584 LTR49 580 - 29 90 195097 61 chain 6068 chr1 249250621 + 100433721 100433865 Tigger1 2417 - 1986 2133 184672 41 58 61 45 chain 28562 chr1 249250621 + 100433893 100434249 THE1A 353 - 0 353 90908 130 1 0 25 1 0 88 1 0 110 chain 132726 chr1 249250621 + 100449846 100451611 L1PB1 5432 - 165 1941 27476 29 6 5 12 3 1 52 16 10 12 1 0 8 1 0 24 3 0 7 13 24 273 1 0 182 3 0 149 0 12 7 1 5 185 10 14 531 2 0 234 chain 10977 chr1 249250621 + 100495960 100496148 MER30 238 + 30 236 156284 77 4 0 6 2 25 14 5 7 40 11 8 29 chain 89986 chr1 249250621 + 100509484 100511080 L1PB2 3958 - 120 1755 39653 17 7 0 7 7 14 25 1 0 22 2 0 74 3 2 60 1 0 49 0 3 25 1 0 26 4 5 54 1 0 3 3 0 15 2 0 5 2 5 35 0 1 13 7 1 14 0 3 51 2 0 45 296 336 4 1 0 98 0 1 44 0 2 129 0 1 6 1 0 59 1 5 186 0 1 32 0 1 156 chain 68517 chr1 249250621 + 100521140 100522815 L1MA3 4352 - 0 1206 49031 24 1 0 11 2 0 29 8 6 24 2 0 23 4 0 25 316 6 29 5 9 20 1 0 27 0 7 8 24 11 40 1 3 65 1 0 4 0 1 80 14 35 14 4 0 50 186 0 59 0 1 7 4 0 49 1 0 94 0 16 23 3 2 66 1 0 22 9 22 37 35 31 104 0 4 13 5 9 26 6 0 34 0 1 35 chain 27714 chr1 249250621 + 100532263 100532569 AluYf4 310 + 0 305 93992 207 0 1 58 2 0 39 chain 5437 chr1 249250621 + 100627080 100627155 L1MB7 1623 - 206 280 190638 40 1 0 34 chain 9910 chr1 249250621 + 100631623 100631792 THE1B 368 + 193 364 161018 11 7 11 12 4 3 12 1 0 64 1 0 4 1 2 52 chain 46956 chr1 249250621 + 100631796 100632373 THE1B-int 1605 + 0 603 61252 95 1 2 333 0 25 148 chain 11374 chr1 249250621 + 100632409 100632582 THE1B 368 + 193 368 154802 12 5 9 13 4 3 12 3 2 124 chain 27331 chr1 249250621 + 100647068 100647354 AluYd8 298 - 11 297 95170 286 chain 17997 chr1 249250621 + 100648873 100650678 L1MA8 2339 - 1320 2320 132865 58 2 4 31 1462 656 130 3 5 44 4 3 10 27 26 12 1 0 21 chain 4064 chr1 249250621 + 100651438 100651518 L1M3 994 - 380 458 206416 17 1 0 22 4 2 13 2 3 21 chain 529168 chr1 249250621 + 100665158 100671639 L1PA7 6471 + 3 6470 4281 397 6 3 48 9 4 314 0 1 710 0 7 298 0 1 24 1 0 225 1 0 601 6 0 65 4 7 185 34 15 397 6 7 21 19 0 151 3 2 11 1 0 503 1 0 419 2 0 74 1 2 490 2 1 182 1 0 271 0 1 181 1 0 9 0 1 132 0 5 307 5 1 108 0 28 77 29 28 137 0 4 12 chain 25132 chr1 249250621 + 100694717 100695021 AluSc 308 - 9 308 104111 12 2 0 8 2 0 24 1 0 255 chain 49390 chr1 249250621 + 100699100 100699684 LTR10C 591 - 1 591 59455 80 0 2 369 0 4 135 chain 13728 chr1 249250621 + 100710206 100710382 MER44A 345 - 93 277 145515 143 0 8 33 chain 248468 chr1 249250621 + 100723890 100726657 L1PA4 6152 - 0 2772 16339 861 1 2 254 0 1 41 0 1 363 1 0 174 0 3 1072 chain 79451 chr1 249250621 + 100729323 100730419 MER11A 1151 + 0 1151 43849 55 0 99 76 1 0 64 4 0 146 5 6 92 0 1 145 5 6 120 0 26 26 43 0 24 22 3 31 8 1 60 6 7 163 chain 25394 chr1 249250621 + 100735239 100735591 L1PA8 5853 - 0 346 102715 16 0 1 74 3 2 19 2 1 42 6 5 14 1 0 71 2 0 46 1 0 55 chain 11422 chr1 249250621 + 100740630 100740773 L1PA16 3655 + 3421 3568 154598 95 0 4 48 chain 24943 chr1 249250621 + 100751731 100752039 AluY 311 + 5 309 105086 113 2 0 8 0 1 91 2 1 85 2 0 5 chain 3221 chr1 249250621 + 100766941 100766979 MLT1F2 592 - 21 59 220568 38 chain 45045 chr1 249250621 + 100773642 100774201 MLT2A2 560 - 1 560 63001 269 3 4 138 1 0 148 chain 19132 chr1 249250621 + 100778790 100779159 MER83B 357 - 7 357 129737 177 97 60 58 10 28 27 chain 22525 chr1 249250621 + 100803294 100803582 AluSp 311 + 15 306 117910 54 7 10 227 chain 38747 chr1 249250621 + 100803583 100804154 MER4D1 891 - 302 886 71084 20 8 0 102 3 1 16 1 0 21 1 0 13 1 0 19 5 4 127 0 28 20 0 1 95 16 14 103 chain 19858 chr1 249250621 + 100805384 100805604 L1PA4 6152 - 254 474 127626 220 chain 22597 chr1 249250621 + 100805604 100805861 L1PA4 6152 + 5895 6152 117595 257 chain 39642 chr1 249250621 + 100834371 100835381 L1PA16 3655 - 126 1014 69833 98 22 181 49 1 0 5 2 1 53 4 1 10 0 32 14 331 0 99 0 1 8 13 17 38 1 0 18 29 34 48 0 1 96 0 14 23 20 19 28 chain 67882 chr1 249250621 + 100839362 100840107 L1PA3long 6157 - 0 744 49296 362 1 0 382 chain 70435 chr1 249250621 + 100841058 100841855 L1PA5 6144 + 5338 6131 48193 639 4 0 154 chain 10270 chr1 249250621 + 100862550 100862686 MER30 238 + 63 218 159283 51 2 24 61 3 0 19 chain 107219 chr1 249250621 + 100871586 100873310 L1PA11 4918 - 401 1789 34910 9 4 0 20 1 0 14 2 0 67 2 0 13 10 9 53 5 0 224 2 1 38 0 1 136 327 7 86 1 2 42 0 1 134 3 0 531 chain 4217 chr1 249250621 + 100874465 100874544 L1MA5A 2387 - 81 157 204330 10 1 0 20 1 5 7 6 0 34 chain 29806 chr1 249250621 + 100874896 100875252 THE1B-int 1605 - 0 356 85417 356 chain 4245 chr1 249250621 + 100948392 100948442 L1PA6 6164 - 6 56 203938 50 chain 4987 chr1 249250621 + 100969994 100970119 MER58A 224 - 3 175 195286 55 48 95 22 chain 32844 chr1 249250621 + 101016686 101017124 MER75 514 - 11 470 79470 5 0 3 139 0 18 83 4 3 18 1 0 145 0 2 43 chain 55149 chr1 249250621 + 101019441 101020462 L1PB1 5432 - 5 894 55615 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 7 4 19 16 6 6 2 0 16 5 4 30 0 1 8 1 0 16 2 1 48 188 74 20 1 3 271 1 2 88 0 5 88 2 0 83 chain 20522 chr1 249250621 + 101020462 101020708 L1PB1 5432 + 4281 4527 124706 246 chain 34650 chr1 249250621 + 101033134 101033719 MLT2A1 477 + 0 477 76691 169 4 1 9 0 1 23 0 1 187 156 49 37 chain 44836 chr1 249250621 + 101033719 101034257 HERVL-int 5654 + 0 539 63248 20 2 0 105 0 3 411 chain 21287 chr1 249250621 + 101034257 101034514 L1PA7 6471 + 5794 6051 122910 257 chain 33909 chr1 249250621 + 101034514 101034907 L1PA7 6471 + 6062 6456 77758 77 0 1 316 chain 2877 chr1 249250621 + 101035314 101035349 L1ME1 1623 - 43 78 227409 35 chain 21203 chr1 249250621 + 101037388 101037662 L1PREC2 3366 + 2011 2290 123203 191 6 5 43 0 4 29 0 2 5 chain 18330 chr1 249250621 + 101053494 101053804 THE1B 368 + 0 306 131987 103 13 14 51 1 0 8 0 2 6 18 11 5 1 0 8 2 6 16 1 0 10 1 0 66 chain 28142 chr1 249250621 + 101056756 101057094 L1PA7 6471 - 5 343 92491 338 chain 85378 chr1 249250621 + 101057902 101059006 L1P3 4156 + 742 1834 41388 25 0 12 231 0 1 126 0 8 124 7 8 337 0 1 116 53 18 85 chain 522145 chr1 249250621 + 101063796 101069940 L1PA5 6144 - 0 6142 4942 1324 0 1 101 0 1 785 0 1 14 1 2 739 1 0 10 9 9 502 0 1 1481 17 8 63 3 0 5 0 3 81 2 0 37 4 0 110 0 1 52 18 1 370 7 6 268 7 33 133 chain 547233 chr1 249250621 + 101097804 101103944 L1PA3long 6157 - 4 6157 1801 841 1 2 71 0 4 1066 0 1 821 1 0 84 2 1 118 1 2 1057 0 4 229 0 1 894 0 2 375 0 1 579 chain 37414 chr1 249250621 + 101117197 101119001 L1PA11 4918 + 3536 4508 72942 130 9 7 104 1230 407 126 0 4 14 5 0 67 1 0 4 0 1 4 8 5 63 2 0 10 11 10 16 chain 539298 chr1 249250621 + 101128549 101134676 L1PA4 6152 - 12 6146 2929 483 0 1 348 0 4 1077 1 0 43 0 2 2471 0 1 1006 1 0 357 0 1 340 chain 501806 chr1 249250621 + 101142482 101148126 L1PA3long 6157 - 0 6152 6737 1925 1 0 447 0 1 840 0 1 28 0 1 1874 6 5 293 0 1 119 0 526 15 25 5 71 chain 38618 chr1 249250621 + 101150497 101150936 L1PA7 6471 - 12 451 71269 439 chain 5192 chr1 249250621 + 101150936 101150995 L1P3 4156 + 3164 3223 193122 59 chain 330167 chr1 249250621 + 101151859 101157044 L1PB1 5432 - 12 5413 12197 16 1 0 13 1 0 21 1 0 23 47 34 16 4 1 16 1 0 43 1 0 16 2 1 53 27 20 13 1 0 16 664 17 48 2 1 5 0 1 78 0 11 325 4 0 750 0 6 24 16 7 101 25 8 21 0 1 534 0 1 312 1 891 257 4 0 6 6 14 158 0 4 134 14 0 262 0 1 43 10 12 97 7 9 367 0 5 16 5 9 13 0 1 10 6 7 7 1 0 56 13 17 69 0 1 201 1 3 141 14 12 25 chain 51169 chr1 249250621 + 101178224 101179023 LTR12 884 + 0 884 58204 12 2 3 148 0 134 58 0 22 104 0 1 43 1 4 28 0 9 36 118 0 135 0 33 114 chain 2719 chr1 249250621 + 101178690 101178760 LTR12 884 + 636 705 170182 32 1 0 37 chain 10830 chr1 249250621 + 101179042 101179245 MER30 238 - 0 238 156866 48 3 0 22 1 7 8 6 0 22 17 37 58 5 23 13 chain 13237 chr1 249250621 + 101181694 101181847 L1PA6 6164 - 2 153 147331 6 2 0 145 chain 39338 chr1 249250621 + 101243725 101244178 L1PA5 6144 + 5681 6135 70269 190 0 1 263 chain 20148 chr1 249250621 + 101245250 101245581 THE1B 368 - 12 368 126684 102 46 56 18 9 8 58 0 1 54 0 15 44 chain 23620 chr1 249250621 + 101247147 101247491 THE1B 368 - 0 368 112472 119 13 21 10 0 4 14 4 2 23 4 3 113 0 15 44 chain 32288 chr1 249250621 + 101249579 101250092 MLT2A1 477 + 0 477 80382 170 4 1 8 0 1 24 0 1 166 25 0 15 1 43 10 53 1 37 chain 2602 chr1 249250621 + 101261969 101261997 L1MA10 1535 + 1474 1502 231676 28 chain 16418 chr1 249250621 + 101266552 101267166 MER11A 1151 + 1 727 45487 61 1 100 129 0 5 88 1 0 4 0 1 54 0 1 87 0 7 22 1 0 125 4 5 37 chain 68520 chr1 249250621 + 101267209 101267983 L1PA4 6152 - 0 780 48978 6 0 5 619 0 1 149 chain 89849 chr1 249250621 + 101267983 101268992 L1PA4 6152 + 4359 5371 39705 39 0 1 745 0 1 155 0 1 70 chain 10749 chr1 249250621 + 101268992 101269394 MER11A 1151 + 727 1151 45487 73 11 36 25 5 2 288 chain 341007 chr1 249250621 + 101279156 101283906 L1PB1 5432 + 907 5420 11871 155 0 1 184 0 4 152 7 0 211 0 1 77 1 7 7 15 0 123 0 1 274 7 9 208 0 6 167 10 0 348 1 0 37 10 21 668 0 1 154 25 15 220 2 0 241 0 6 109 0 15 299 3 0 17 0 2 120 0 2 36 5 13 136 54 22 127 1 2 9 196 0 24 0 2 6 1 0 14 4 0 8 2 0 52 7 6 11 8 7 36 1 0 16 4 0 14 10 1 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 7 0 1 8 chain 467402 chr1 249250621 + 101285520 101291761 L1PA7 6471 + 5 6465 8137 162 6 5 25 0 1 4 11 9 110 108 305 17 0 1 11 11 11 11 32 32 12 5 15 24 1 2 31 1 76 177 0 21 106 1 22 1011 7 1 434 1 0 148 6 7 135 1 0 152 4 5 396 4 2 5 0 2 327 110 0 160 0 1 4 1 0 24 14 13 110 0 1 427 4 5 104 1 9 271 2 0 318 0 2 350 3 2 87 1 2 228 0 1 368 1 2 9 0 11 7 11 0 129 chain 12491 chr1 249250621 + 101291917 101292066 L1PA7 6471 - 1 150 150284 149 chain 521015 chr1 249250621 + 101305263 101311652 L1PA7 6471 - 80 6471 5052 174 0 1 505 2 1 6 0 2 81 2 1 59 0 3 19 0 1 316 12 8 538 1 5 883 9 15 276 2 1 10 7 6 551 1 0 241 0 1 46 17 0 1347 0 1 58 0 4 385 1 0 236 0 1 198 1 3 237 1 4 167 chain 65040 chr1 249250621 + 101320279 101321282 L1PA16 3655 - 36 1022 50556 16 54 25 85 0 1 200 8 6 18 4 8 57 1 0 125 5 6 135 16 15 19 1 0 10 1 10 90 1 0 67 1 5 42 5 4 42 chain 3107 chr1 249250621 + 101357600 101357634 HERVL-int 5654 + 5620 5654 222802 34 chain 30381 chr1 249250621 + 101384107 101384511 MER47B 469 - 21 421 83707 229 3 0 85 13 12 74 chain 29437 chr1 249250621 + 101388561 101388871 AluYf4 310 - 0 310 86917 310 chain 25607 chr1 249250621 + 101398521 101398820 AluSc5 308 - 0 299 101693 299 chain 38370 chr1 249250621 + 101398977 101399406 L1PA5 6144 - 3 432 71615 429 chain 465338 chr1 249250621 + 101410065 101415671 L1PA6 6164 - 2 6132 8208 4 1 0 140 0 7 7 8 198 68 0 2 73 0 16 56 0 2 267 0 4 25 1 0 792 0 2 247 1 0 274 0 3 13 1 0 246 10 8 4 0 1 331 1 232 339 0 4 205 7 14 181 1 0 429 5 12 234 1 0 255 1 5 7 0 2 64 0 1 110 0 5 128 0 10 107 0 1 25 0 17 24 1 0 137 0 17 169 1 0 208 6 7 391 chain 16878 chr1 249250621 + 101477790 101477988 MER107 203 - 0 201 135895 35 1 4 162 chain 19883 chr1 249250621 + 101532883 101533314 L1PA11 4918 - 289 684 127541 18 137 107 16 1 0 14 2 0 67 2 0 6 17 16 151 chain 12607 chr1 249250621 + 101563094 101563233 L1PA7 6471 - 13 152 149815 139 chain 132155 chr1 249250621 + 101578653 101580200 L1PA6 6164 + 4616 6161 27604 33 1 0 666 3 0 171 0 1 339 0 1 189 1 3 135 2 0 7 chain 24596 chr1 249250621 + 101581038 101581303 L1PA2 6032 - 0 264 107017 260 1 0 4 chain 64402 chr1 249250621 + 101589330 101590067 L1PA5 6144 - 3 733 50839 249 7 0 481 chain 15246 chr1 249250621 + 101595071 101595422 L1PB1 5432 - 5 318 140646 5 1 0 18 1 0 12 1 0 22 1 0 9 17 15 14 1 0 5 3 1 15 8 0 14 3 0 17 2 1 43 6 5 10 2 1 7 7 0 45 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 chain 4917 chr1 249250621 + 101604824 101604886 LTR16D 553 + 426 489 196088 25 0 1 37 chain 7137 chr1 249250621 + 101611640 101611802 L1MA5A 2387 - 12 157 176497 16 2 0 19 1 0 10 1 0 13 49 36 51 chain 87924 chr1 249250621 + 101624576 101625725 L1PA7 6471 - 15 1203 40401 131 26 27 12 1 21 126 3 5 98 1 0 213 0 16 114 4 7 65 2 0 50 2 3 219 1 0 81 chain 132509 chr1 249250621 + 101625729 101655057 L1PA7 6471 + 3758 6470 27522 78 3 0 153 14 8 11 0 1 197 2 1 333 0 4 117 0 1 239 0 1 76 5 0 285 27099 490 586 1 2 129 chain 4445 chr1 249250621 + 101632045 101632095 MER50 708 + 400 450 201398 50 chain 5595 chr1 249250621 + 101651954 101652044 THE1D 372 + 78 160 189140 28 2 0 8 7 1 45 chain 200009 chr1 249250621 + 101695922 101698261 L1PA7 6471 + 4110 6455 19210 558 0 4 948 2 1 88 1 2 170 0 1 425 1 2 146 chain 174488 chr1 249250621 + 101737614 101739560 L1PA5 6144 - 6 1960 21540 149 1 0 469 0 1 789 0 8 538 chain 18227 chr1 249250621 + 101789677 101790098 MER51B 395 + 0 395 132265 58 27 71 15 16 0 22 61 8 11 1 0 44 54 54 112 chain 5981 chr1 249250621 + 101800246 101800391 L1PB3 3668 - 54 186 185417 15 8 4 13 1 0 13 11 7 33 6 4 21 6 4 18 chain 25241 chr1 249250621 + 101808418 101808779 THE1B 368 + 0 367 103529 33 7 22 117 4 1 23 8 3 94 1 0 74 chain 33874 chr1 249250621 + 101824684 101825121 MLT2A1 477 - 0 477 77820 51 8 42 146 0 1 64 1 5 25 0 1 142 chain 243810 chr1 249250621 + 101825121 101828102 HERVL-int 5654 - 0 2999 16574 219 0 1 21 2 1 18 4 0 121 0 3 181 1 0 326 0 6 257 1 0 407 0 9 89 10 1 196 14 28 845 0 1 269 chain 57120 chr1 249250621 + 101828111 101828869 THE1A-int 1579 + 807 1574 54455 175 9 8 55 12 15 135 11 14 67 8 12 286 chain 28253 chr1 249250621 + 101828874 101829228 THE1A 353 + 0 353 92099 108 1 0 245 chain 91772 chr1 249250621 + 101837607 101838905 L1PB2 3958 - 120 1382 39040 63 2 1 21 3 1 73 1 0 62 1 0 60 16 12 93 4 0 13 2 0 64 5 0 11 1 4 51 2 0 15 0 20 81 0 1 267 2 0 149 3 0 22 41 8 170 chain 16485 chr1 249250621 + 101839515 101839901 L1PB1 5432 - 10 362 136969 18 1 0 12 1 0 22 1 0 24 67 50 16 1 0 42 2 1 16 2 1 52 17 10 14 1 0 6 1 0 20 22 20 28 chain 24798 chr1 249250621 + 101853701 101854067 THE1B 368 - 0 368 105903 77 3 0 92 9 0 13 18 17 102 8 23 44 chain 388237 chr1 249250621 + 101876886 101882274 L1PB1 5432 + 22 5404 10505 136 6 13 135 1 0 245 0 2 212 0 2 318 3 0 287 0 1 13 51 66 239 0 6 26 0 3 479 57 0 9 0 57 50 0 37 141 0 2 13 0 1 328 2 0 83 3 5 280 12 8 217 0 1 283 28 15 67 1 0 128 0 3 29 0 1 191 2 1 5 0 1 283 5 6 38 0 2 200 19 0 114 17 12 298 19 0 20 1 0 12 1 0 10 7 6 5 2 0 53 2 1 16 15 15 21 8 7 16 1 0 6 16 6 19 2 0 5 1 0 14 3 1 23 1 0 22 1 0 12 chain 30001 chr1 249250621 + 101888715 101889111 MLT2A1 477 - 72 475 84810 20 0 2 210 5 9 22 1 2 138 chain 32113 chr1 249250621 + 101908499 101909399 MER4A 717 - 8 717 80667 33 0 1 29 363 171 41 56 72 27 3 0 3 6 0 201 12 3 109 1 3 16 chain 16483 chr1 249250621 + 101908678 101908900 L1PA8 5853 + 5620 5853 136972 55 0 13 52 2 1 19 1 0 93 chain 15424 chr1 249250621 + 101911536 101911900 L1PB1 5432 - 6 327 140117 4 1 0 29 1 0 23 1 0 20 60 46 8 12 0 15 1 0 44 1 0 16 2 1 50 20 14 12 8 6 24 3 0 9 chain 4315 chr1 249250621 + 101912669 101912720 MER50 708 + 558 609 203023 51 chain 50366 chr1 249250621 + 101916138 101916774 L1PA6 6164 + 5518 6162 58741 308 1 2 127 0 3 12 0 2 30 16 17 39 1 2 102 chain 388053 chr1 249250621 + 101965022 101969853 HERV9-int 5642 + 11 4824 10519 588 16 17 68 0 1 31 11 8 122 2 0 30 7 8 216 21 11 21 1 3 452 1 0 25 0 1 328 0 4 265 0 1 576 4 5 19 16 3 194 17 9 388 0 1 829 0 1 298 0 5 285 chain 3375 chr1 249250621 + 101994612 101994651 MLT2B5 662 - 0 39 217592 39 chain 21578 chr1 249250621 + 102010223 102010502 AluSp 311 + 10 285 121851 38 9 5 232 chain 71804 chr1 249250621 + 102021039 102021903 MER11D 897 + 0 897 47563 176 2 11 406 1 24 165 0 1 114 chain 3215 chr1 249250621 + 102046537 102047035 L1ME3A 1206 - 589 1095 220670 28 302 316 9 1 0 15 115 110 28 chain 266469 chr1 249250621 + 102065293 102068647 HERVH-int 3825 - 2 3825 15371 485 8 218 96 0 8 115 0 1 602 0 1 287 0 4 215 4 5 6 0 1 322 0 2 22 10 1 206 15 0 39 8 1 345 0 3 58 0 265 30 1 0 10 20 24 85 5 6 27 1 0 302 0 1 30 chain 22714 chr1 249250621 + 102068655 102068998 LTR7 482 - 5 480 117015 44 13 14 95 0 10 18 0 31 31 9 10 72 9 98 52 chain 8584 chr1 249250621 + 102077023 102077129 L1PA15 4387 + 3988 4095 167823 51 0 1 55 chain 61309 chr1 249250621 + 102093525 102094204 L1PA3long 6157 - 1290 1969 52153 679 chain 117288 chr1 249250621 + 102094204 102095494 L1PA3long 6157 + 4860 6149 32028 1038 1 0 251 chain 68949 chr1 249250621 + 102101877 102102633 L1PA3long 6157 - 11 767 48838 756 chain 102851 chr1 249250621 + 102133902 102135036 L1PA3long 6157 - 0 1138 36038 507 0 4 627 chain 40423 chr1 249250621 + 102135854 102136363 MER41C 542 + 0 531 68700 49 0 1 261 0 21 199 chain 22260 chr1 249250621 + 102139320 102139660 THE1B 368 + 1 348 119074 43 5 20 108 10 9 19 15 9 84 1 0 55 chain 20937 chr1 249250621 + 102143711 102143961 AluY 311 + 43 294 124159 78 5 6 167 chain 24563 chr1 249250621 + 102157394 102157705 L1PA7 6471 - 1 320 107177 12 0 2 249 1 8 28 0 1 12 2 0 7 chain 93966 chr1 249250621 + 102157705 102158817 L1PA7 6471 + 5019 6137 38360 508 0 3 86 1 5 6 2 0 217 0 1 292 chain 22946 chr1 249250621 + 102165931 102166177 L1PA5 6144 + 5890 6136 115879 246 chain 5196 chr1 249250621 + 102212036 102212104 L1PA16 3655 + 2376 2442 193075 61 2 0 5 chain 90878 chr1 249250621 + 102230855 102231919 L1PA7 6471 - 1057 2128 39328 34 0 11 19 0 1 289 4 0 582 2 1 134 chain 84076 chr1 249250621 + 102231919 102232971 L1PA7 6471 + 5419 6462 41870 73 8 1 65 0 6 57 2 0 370 15 7 133 0 1 322 0 1 7 chain 12674 chr1 249250621 + 102236177 102236326 L1PA3long 6157 - 165 314 149556 149 chain 12375 chr1 249250621 + 102236326 102236482 L1PA3long 6157 + 6001 6157 150736 98 1 0 37 0 1 20 chain 77242 chr1 249250621 + 102244784 102245919 L1MA1 4479 - 328 1432 44853 9 1 0 35 2 0 22 12 11 122 3 0 6 1 0 87 1 0 13 2 0 18 1 0 73 1 0 16 2 0 25 1 0 155 4 7 39 2 1 118 8 5 90 3 0 36 4 0 12 1 0 60 17 13 21 2 0 110 chain 45089 chr1 249250621 + 102251204 102251744 L1PA8A 6298 + 5748 6288 62952 540 chain 86201 chr1 249250621 + 102276876 102277885 L1PA5 6144 + 5116 6128 41074 8 2 0 114 5 6 13 8 9 27 0 1 224 0 1 274 0 1 334 chain 22828 chr1 249250621 + 102280757 102281025 AluY 311 + 37 305 116450 268 chain 138886 chr1 249250621 + 102353623 102355215 L1PA5 6144 + 4550 6141 26332 737 1 0 854 chain 16767 chr1 249250621 + 102444866 102445150 THE1D 372 + 1 329 136203 49 9 0 23 5 6 87 33 34 70 0 51 8 chain 50290 chr1 249250621 + 102445161 102445864 THE1D-int 1627 + 919 1627 58796 119 1 2 147 9 6 136 20 21 83 0 4 24 4 5 47 1 0 81 0 1 22 0 1 9 chain 4964 chr1 249250621 + 102484262 102484340 L1PB1 5432 + 5347 5422 195538 23 1 0 21 1 0 13 1 0 18 chain 53444 chr1 249250621 + 102484360 102484969 L1PA4 6152 + 5532 6141 56727 366 2 1 104 0 1 137 chain 3574 chr1 249250621 + 102486287 102486324 MER66B 489 - 157 194 214083 37 chain 38870 chr1 249250621 + 102494292 102494771 L1PA6 6164 + 5659 6149 70916 44 0 13 293 2 0 140 chain 50872 chr1 249250621 + 102496569 102497277 Charlie3 2679 + 19 802 58387 15 39 41 327 8 69 40 1 12 57 0 1 221 chain 5278 chr1 249250621 + 102521211 102521289 L1PBb 2709 + 2337 2593 192222 12 0 179 26 1 0 39 chain 120211 chr1 249250621 + 102530595 102531968 L1PA4 6152 + 4767 6140 30976 1373 chain 68619 chr1 249250621 + 102538970 102539718 L1PA3long 6157 - 0 748 48974 748 chain 6446 chr1 249250621 + 102568064 102568148 MER4A1 472 - 278 380 181671 75 0 18 9 chain 4377 chr1 249250621 + 102572192 102572241 U2 167 - 118 167 202222 49 chain 73972 chr1 249250621 + 102573756 102574616 L1PA7 6471 - 2 862 46529 379 0 1 475 1 0 5 chain 121578 chr1 249250621 + 102597252 102598839 L1PA10 4194 + 2511 4113 30514 156 8 15 10 6 9 261 0 1 156 0 5 5 1 0 258 0 1 368 7 6 5 0 1 281 1 0 64 chain 45887 chr1 249250621 + 102598975 102599480 L1PA3long 6157 - 1004 1509 62139 505 chain 91891 chr1 249250621 + 102599482 102600502 L1PA3long 6157 + 5126 6146 39001 1020 chain 250152 chr1 249250621 + 102604946 102608135 L1PA7 6471 + 2293 6470 16243 215 0 1 88 13 16 20 13 0 67 0 1 168 0 1009 122 0 1 761 16 6 44 5 1 7 0 4 6 1 0 628 1 2 160 3 2 82 1 2 383 11 7 339 1 2 29 1 0 4 chain 23248 chr1 249250621 + 102687091 102687349 L1PA4 6152 - 16 275 114451 132 0 1 126 chain 29121 chr1 249250621 + 102695659 102695965 AluYb8 318 + 0 306 88451 306 chain 21985 chr1 249250621 + 102696355 102696587 L1HS 6032 - 464 696 120289 232 chain 41554 chr1 249250621 + 102696587 102697031 L1HS 6032 + 5585 6029 67217 444 chain 3886 chr1 249250621 + 102706858 102706936 MER33 330 - 58 138 209078 22 3 0 7 13 18 33 chain 18894 chr1 249250621 + 102708024 102708294 L1PA8 5853 - 4 268 130382 89 2 1 18 2 1 40 0 7 8 8 0 6 1 0 71 2 0 23 chain 15157 chr1 249250621 + 102717086 102717323 MER30 238 - 0 237 140888 48 3 0 65 18 0 9 6 27 88 chain 8766 chr1 249250621 + 102723663 102723768 L1PA4 6152 + 6042 6152 166838 99 0 5 6 chain 87136 chr1 249250621 + 102729744 102730779 L1PA6 6164 + 5127 6160 40721 662 1 2 81 0 1 227 4 0 60 chain 14926 chr1 249250621 + 102731651 102731816 L1PA4 6152 + 5987 6152 141557 165 chain 31032 chr1 249250621 + 102751574 102752029 L1MA1 4479 + 221 680 82465 7 1 0 52 32 33 21 0 2 265 8 10 69 chain 32246 chr1 249250621 + 102755441 102755828 L1PA7 6471 - 13 401 80448 326 0 1 61 chain 191123 chr1 249250621 + 102772726 102774884 L1PA4 6152 - 9 2165 19949 71 1 0 77 1 0 469 0 1 230 0 1 665 2 0 642 chain 111962 chr1 249250621 + 102777100 102778486 L1P1 4361 - 2971 4348 33676 332 0 2 199 0 1 42 17 0 237 4 3 150 0 5 239 0 1 166 chain 46740 chr1 249250621 + 102778497 102779024 L1PA4 6152 + 5621 6151 61423 124 0 1 189 0 1 67 0 1 147 chain 37733 chr1 249250621 + 102779767 102780172 L1PA2 6032 - 170 575 72510 405 chain 78191 chr1 249250621 + 102807249 102808108 L1PA3long 6157 - 1707 2566 44174 859 chain 155951 chr1 249250621 + 102808108 102809821 L1PA3long 6157 + 4444 6156 23864 727 1 0 985 chain 307250 chr1 249250621 + 102821320 102825675 L1PA8 5853 + 1756 5853 13119 50 1 8 99 4 134 498 99 14 150 0 2 28 0 7 130 2 1 30 3 1 400 18 22 57 4 0 616 0 1 6 1 0 37 7 11 71 0 7 198 0 1 36 5 6 632 321 0 72 2 1 17 0 4 461 1 0 44 2 0 71 1 0 14 4 3 28 1 0 16 6 1 19 4 3 12 1 2 76 chain 2683 chr1 249250621 + 102843449 102843551 L1MD2 1676 + 1336 1440 230398 25 58 60 19 chain 94809 chr1 249250621 + 102851180 102852244 L1P1 4361 + 3116 4179 38139 1034 1 0 29 chain 13626 chr1 249250621 + 102867863 102868007 L1PA2 6032 - 4 148 145878 144 chain 44148 chr1 249250621 + 102870462 102871039 L1PA8A 6298 - 634 1226 64013 94 0 2 68 6 11 16 0 4 174 0 4 219 chain 141365 chr1 249250621 + 102891167 102892796 L1PA5 6144 + 4510 6142 25926 784 7 8 54 0 1 155 0 1 629 chain 20579 chr1 249250621 + 102895660 102895889 L1PA3long 6157 - 172 402 125366 116 0 1 113 chain 14765 chr1 249250621 + 102895896 102896058 L1PA3long 6157 + 5991 6153 142047 162 chain 2821 chr1 249250621 + 102898771 102898805 Tigger4a 237 - 58 92 228452 34 chain 538885 chr1 249250621 + 102907639 102913784 L1PA4 6152 + 1 6152 3005 574 9 13 132 16 15 1718 2 0 234 0 5 3282 6 5 18 6 0 8 1 8 139 chain 62289 chr1 249250621 + 102922845 102923548 L1PA5 6144 + 5441 6144 51757 703 chain 118377 chr1 249250621 + 102926952 102928288 L1PA4 6152 - 9 1359 31654 139 1 8 184 1 0 330 0 4 170 0 4 511 chain 28939 chr1 249250621 + 102945524 102945831 AluYf4 310 + 0 307 89276 307 chain 77613 chr1 249250621 + 102946409 102947277 L1PA5 6144 - 961 1829 44686 868 chain 81396 chr1 249250621 + 102947278 102948207 L1PA5 6144 + 5205 6139 43010 89 0 5 840 chain 261730 chr1 249250621 + 102969731 102972876 L1PA5 6144 - 4 3139 15605 136 1 8 12 25 12 393 8 3 467 6 7 152 1 0 188 5 6 102 1 3 28 0 1 144 0 2 527 0 2 181 3 0 641 11 7 113 chain 69695 chr1 249250621 + 102972876 102973683 L1PA5 6144 + 2194 3002 48453 119 2 1 442 3 5 241 chain 81591 chr1 249250621 + 102976588 102977483 L1PA2 6032 - 5 902 42928 153 0 2 742 chain 10975 chr1 249250621 + 102980572 102980706 L1PA8 5853 - 186 317 156291 58 2 0 45 1 0 28 chain 4344 chr1 249250621 + 102980728 102980793 L1PA8 5853 + 5696 5760 202673 43 3 2 19 chain 7729 chr1 249250621 + 102980794 102980886 L1PA8 5853 + 5760 5852 172717 92 chain 14914 chr1 249250621 + 102991356 102991563 MER30 238 - 0 220 141592 44 3 0 62 4 20 94 chain 42609 chr1 249250621 + 103000000 103000482 L1PA4 6152 + 5336 5817 65887 60 8 7 414 chain 28221 chr1 249250621 + 103000482 103000816 L1PA4 6152 + 5818 6152 92225 334 chain 18373 chr1 249250621 + 103000999 103001243 AluSc 308 + 53 296 131869 83 8 5 7 0 3 106 1 0 39 chain 6046 chr1 249250621 + 103003714 103004020 THE1D 372 - 61 370 184845 25 143 145 18 0 1 9 61 61 50 chain 29458 chr1 249250621 + 103007719 103008029 AluYa5 310 - 0 310 86808 310 chain 87630 chr1 249250621 + 103016862 103017940 L1PA7 6471 - 7 1089 40521 5 2 0 322 1 0 433 0 1 85 6 9 219 0 3 5 chain 26855 chr1 249250621 + 103017940 103018265 L1PA7 6471 + 5049 5379 94610 3 0 5 139 1 0 106 0 1 76 chain 64630 chr1 249250621 + 103019346 103020169 MER11A 1151 + 0 1146 50736 215 8 272 71 0 2 274 1 59 192 1 0 61 chain 54627 chr1 249250621 + 103022840 103023546 HERVL-int 5654 - 0 729 55953 38 0 1 162 0 1 17 0 11 5 1 0 88 0 1 101 14 23 157 1 2 122 chain 20794 chr1 249250621 + 103028645 103028885 L1PA4 6152 + 5909 6150 124626 99 0 1 141 chain 6141 chr1 249250621 + 103052948 103053095 MER44A 345 - 0 158 184071 18 57 68 72 chain 3543 chr1 249250621 + 103070279 103070317 L1PA6 6164 + 5959 5997 214668 38 chain 39617 chr1 249250621 + 103089933 103090367 L1PA3long 6157 - 1 435 69869 434 chain 29225 chr1 249250621 + 103096076 103096385 AluYa5 310 - 1 310 87933 309 chain 161137 chr1 249250621 + 103108219 103110016 L1PA3long 6157 + 4356 6157 23171 193 0 3 595 0 1 159 1 0 707 0 1 142 chain 160874 chr1 249250621 + 103115602 103117549 L1PA7 6471 - 19 1982 23218 131 3 0 201 1 0 77 0 2 22 3 1 98 0 1 89 1 13 202 1 0 938 0 8 180 chain 132495 chr1 249250621 + 103124543 103126133 LTR12C 1709 - 0 1709 27527 481 0 4 106 3 1 5 1 0 198 7 9 57 0 118 178 2 0 552 chain 80862 chr1 249250621 + 103166610 103167518 L1PA3long 6157 - 1106 2015 43215 879 0 1 29 chain 97973 chr1 249250621 + 103167518 103168618 L1PA3long 6157 + 5058 6157 37285 249 1 0 850 chain 32460 chr1 249250621 + 103172511 103173092 L1PA13 3608 - 120 721 80094 20 1 0 20 2 0 7 2 0 45 2 0 10 9 8 43 1 0 62 2 0 34 9 40 39 0 3 28 51 50 21 10 6 32 0 2 131 chain 29240 chr1 249250621 + 103176144 103176462 L1PA3long 6157 - 0 318 87846 318 chain 53649 chr1 249250621 + 103209439 103210167 LTR12 884 - 23 884 56585 135 0 103 223 0 22 16 0 25 193 41 25 94 1 0 25 chain 2002 chr1 249250621 + 103210006 103210029 LTR12 884 - 806 829 129928 23 chain 313145 chr1 249250621 + 103211205 103215170 HERV9-int 5642 - 818 5642 12886 11 0 1 258 0 1 29 0 5 567 9 943 4 0 1 1157 6 7 258 10 3 25 0 4 306 1 0 117 6 0 6 97 18 283 0 1 28 1 0 75 0 4 92 25 24 180 0 1 330 5 6 79 chain 17171 chr1 249250621 + 103215206 103215431 LTR12_ 688 - 28 354 135106 23 0 1 155 0 103 35 2 0 5 1 0 4 chain 38604 chr1 249250621 + 103235475 103235966 L1PB1 5432 - 1147 1644 71288 218 0 5 97 12 13 164 chain 77783 chr1 249250621 + 103235974 103237313 L1PB1 5432 + 4283 5420 44624 35 0 2 303 3 0 109 0 1 65 1 0 107 21 0 90 2 1 38 12 13 5 1 0 41 0 1 4 7 7 9 161 0 20 1 0 13 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 1 0 4 11 10 17 8 5 14 2 0 18 0 1 5 1 0 21 1 0 29 chain 43855 chr1 249250621 + 103240286 103240842 MER41A 554 - 0 554 64380 241 2 0 119 1 0 4 4 5 185 chain 43320 chr1 249250621 + 103244966 103245439 L1PA3long 6157 - 1666 2164 64367 161 0 25 312 chain 147399 chr1 249250621 + 103245439 103247098 L1PA3long 6157 + 4496 6157 24980 1408 0 1 104 0 1 147 chain 74462 chr1 249250621 + 103255404 103256272 MER11D 897 - 6 897 46294 281 4 27 583 chain 9164 chr1 249250621 + 103263936 103264041 L1PA5 6144 + 6039 6144 164736 105 chain 305433 chr1 249250621 + 103269955 103273454 L1PA4 6152 - 12 3519 13194 834 0 10 420 1 0 557 1 0 1686 chain 37844 chr1 249250621 + 103273454 103273888 L1PA4 6152 + 2208 2642 71974 434 chain 13059 chr1 249250621 + 103276636 103276874 LTR26 622 - 62 277 147996 29 21 20 96 6 0 51 22 6 13 chain 131609 chr1 249250621 + 103279087 103281014 L1PB1 5432 - 64 1958 27713 17 7 5 15 1 0 4 2 0 19 29 17 10 1 0 45 6 5 10 2 1 53 2 0 6 7 3 12 2 1 7 1 0 24 1 0 5 7 6 40 1 2 440 10 7 108 1 2 489 20 21 107 10 9 151 7 0 222 8 13 18 chain 25508 chr1 249250621 + 103291609 103292045 LTR10A 586 + 27 517 102188 32 0 8 7 6 7 20 3 24 14 1 9 36 36 37 60 1 2 113 19 33 88 chain 519631 chr1 249250621 + 103292059 103298210 L1PA5 6144 + 0 6141 5196 120 0 14 15 16 2 170 0 3 404 0 1 1210 12 11 496 2 0 346 8 0 372 3 0 11 1 0 1045 0 1 1065 1 0 513 0 1 181 0 5 7 18 13 135 chain 33206 chr1 249250621 + 103298844 103299251 LTR3 431 + 15 422 78870 407 chain 54896 chr1 249250621 + 103301498 103302140 L1PA4 6152 + 5501 6143 55773 482 1 4 5 3 0 151 chain 10925 chr1 249250621 + 103311198 103311324 L1MA2 4263 + 719 845 156507 126 chain 2657 chr1 249250621 + 103319964 103320051 LTR12C 1709 + 651 698 230929 19 46 6 22 chain 21923 chr1 249250621 + 103325228 103325474 L1PA5 6144 + 5645 5891 120534 246 chain 20607 chr1 249250621 + 103325487 103325721 L1PA5 6144 + 5903 6137 125268 151 0 1 70 1 0 12 chain 29518 chr1 249250621 + 103325959 103326268 AluYk12 309 - 0 309 86572 309 chain 6353 chr1 249250621 + 103369691 103369762 L1PA4 6152 - 1159 1230 180985 71 chain 106032 chr1 249250621 + 103369762 103370939 L1PA4 6152 + 4972 6151 35250 704 0 2 70 3 0 5 0 3 395 chain 544354 chr1 249250621 + 103393658 103399669 L1PA2 6032 - 3 6029 2163 470 0 6 367 0 4 870 0 1 1916 0 1 679 0 1 1137 1 0 5 11 14 555 chain 46422 chr1 249250621 + 103411377 103411885 L1PA3long 6157 + 5641 6149 61662 508 chain 37667 chr1 249250621 + 103451676 103452101 L1PA4 6152 + 5697 6139 72591 120 0 1 220 0 1 75 0 15 10 chain 122758 chr1 249250621 + 103485146 103486491 L1PA3long 6157 - 0 1345 30133 1345 chain 4898 chr1 249250621 + 103486491 103486544 L1PA3long 6157 + 4805 4858 195252 53 chain 541822 chr1 249250621 + 103511176 103517306 L1PA4 6152 - 1 6150 2539 228 0 2 109 1 0 41 1 0 279 0 14 847 1 0 279 0 4 331 0 1 742 0 5 1666 1 0 1027 1 0 209 2 0 365 chain 10410 chr1 249250621 + 103521192 103521377 MER30 238 + 1 238 158644 16 13 14 14 0 1 44 12 64 43 2 0 41 chain 3141 chr1 249250621 + 103561649 103561685 L1MC2 1988 - 0 36 222165 36 chain 14492 chr1 249250621 + 103597284 103597946 L1PB1 5432 - 3 618 44874 7 2 0 18 1 0 13 1 0 21 1 0 23 3 1 11 12 8 30 13 1 16 4 3 41 1 0 15 2 1 52 2 0 10 4 0 12 1 0 8 1 0 24 3 0 6 20 5 91 3 7 63 5 6 122 chain 68656 chr1 249250621 + 103597998 103598799 L1PA4 6152 - 0 810 48958 9 0 14 362 0 1 169 6 0 255 chain 126251 chr1 249250621 + 103598799 103600232 L1PA4 6152 + 3933 5367 29016 532 0 1 901 chain 12500 chr1 249250621 + 103600238 103600809 L1PB1 5432 - 628 1198 44874 122 0 2 46 4 0 9 1 2 389 chain 167179 chr1 249250621 + 103601247 103603288 L1PA6 6164 - 2 2015 22374 136 4 11 13 7 0 680 0 4 669 2 0 56 33 1 84 6 7 180 1 2 170 chain 287057 chr1 249250621 + 103628346 103632489 L1PA8 5853 - 10 3919 14217 82 2 1 19 7 6 40 15 13 39 0 9 26 11 9 37 1 0 21 319 28 335 0 1 83 4 0 78 1 0 4 0 3 178 4 3 4 0 1 290 0 4 184 0 1 4 1 0 114 12 11 346 4 0 8 5 9 239 10 11 16 4 3 35 11 12 61 1 7 254 6 5 144 0 32 35 2 1 74 5 4 12 0 1 67 0 1 86 1 0 267 0 4 44 1 13 330 16 0 8 1 17 135 chain 28557 chr1 249250621 + 103635875 103636190 AluYa5 310 - 1 310 90930 183 2 0 29 4 0 97 chain 13056 chr1 249250621 + 103640286 103640439 L1PA4 6152 + 5996 6152 148009 140 0 3 13 chain 41947 chr1 249250621 + 103651878 103652614 L1PREC2 3366 + 139 869 66688 24 61 52 16 2 1 13 1 0 9 1 0 4 1 0 25 4 3 119 7 6 57 1 0 12 52 61 164 0 1 42 0 1 4 1 0 116 chain 11204 chr1 249250621 + 103700921 103701251 THE1A 353 + 36 353 155406 73 2 1 50 166 154 39 chain 105016 chr1 249250621 + 103701251 103702685 THE1A-int 1579 + 0 1567 35497 241 0 3 142 9 11 45 3 0 19 1 0 180 0 1 53 11 136 20 3 0 5 6 10 27 1 0 14 6 8 194 11 15 443 chain 23826 chr1 249250621 + 103702697 103703023 THE1A 353 + 0 330 111331 20 14 16 28 0 2 44 1 0 92 1 0 90 0 2 36 chain 24693 chr1 249250621 + 103716670 103716950 L1PA4 6152 + 5872 6152 106475 280 chain 55590 chr1 249250621 + 103728271 103728901 L1PA3long 6157 - 1801 2432 55323 383 0 1 247 chain 146964 chr1 249250621 + 103728901 103730652 L1PA3long 6157 + 4361 6145 25025 309 1 2 671 5 0 7 1 37 412 0 1 345 chain 439054 chr1 249250621 + 103732778 103738294 HERVL-int 5654 + 1 5646 9079 199 0 2 155 15 14 567 1 2 4 1 0 174 1 0 291 8 17 96 1 2 79 0 4 88 0 1 179 7 8 17 1 0 43 0 1 57 0 8 320 0 2 843 5 4 38 11 20 109 5 0 225 5 0 24 2 0 479 0 1 939 13 117 97 1 0 55 17 20 344 chain 29323 chr1 249250621 + 103738301 103738697 MLT2A1 477 + 0 392 87415 170 4 1 8 0 1 23 1 2 153 0 1 26 4 0 7 chain 119306 chr1 249250621 + 103744957 103746400 L1PA7 6471 - 5 1459 31289 144 1 2 689 0 10 609 chain 26341 chr1 249250621 + 103747365 103747651 AluYa5 310 - 6 289 98650 178 3 0 105 chain 153288 chr1 249250621 + 103751838 103753587 L1PA5 6144 - 9 1763 24188 17 4 0 444 0 6 371 0 3 913 chain 14792 chr1 249250621 + 103755426 103755611 MSTA 426 + 242 426 141956 67 1 0 117 chain 69324 chr1 249250621 + 103776755 103777591 L1PA7 6471 + 5634 6470 48669 593 1 0 80 11 12 151 chain 83879 chr1 249250621 + 103785265 103786229 L1PA4 6152 + 5186 6151 41957 364 1 2 340 1 0 86 1 2 171 chain 84207 chr1 249250621 + 103805449 103806534 MER11B 1079 + 0 1079 41815 264 3 0 470 6 7 29 11 5 281 1 3 20 chain 6899 chr1 249250621 + 103806534 103806619 THE1B-int 1605 - 1520 1605 178204 85 chain 86378 chr1 249250621 + 103839292 103840339 MER11B 1079 - 15 1079 41008 220 0 1 72 8 2 436 0 17 86 0 5 225 chain 52391 chr1 249250621 + 103848240 103849043 L1PA11 4918 + 3806 4578 57359 83 40 20 359 4 8 55 3 1 63 1 0 77 2 0 16 1 0 10 24 22 10 13 9 15 1 0 13 2 0 11 chain 20276 chr1 249250621 + 103919238 103919492 L1PA5 6144 - 0 256 126293 11 1 3 242 chain 27035 chr1 249250621 + 103919492 103919798 L1PA5 6144 + 5544 5850 96160 306 chain 536655 chr1 249250621 + 103919838 103925962 L1PA4 6152 + 6 6151 3360 677 0 1 87 0 3 106 0 1 355 0 1 3216 0 12 39 0 1 159 4 5 881 1 2 340 1 0 86 1 2 171 chain 84207 chr1 249250621 + 103945181 103946266 MER11B 1079 + 0 1079 41814 264 3 0 470 6 7 29 11 5 281 1 3 20 chain 6899 chr1 249250621 + 103946266 103946351 THE1B-int 1605 - 1520 1605 178203 85 chain 86378 chr1 249250621 + 103979024 103980071 MER11B 1079 - 15 1079 41007 220 0 1 72 8 2 436 0 17 86 0 5 225 chain 52391 chr1 249250621 + 103987972 103988775 L1PA11 4918 + 3806 4578 57358 83 40 20 359 4 8 55 3 1 63 1 0 77 2 0 16 1 0 10 24 22 10 13 9 15 1 0 13 2 0 11 chain 40243 chr1 249250621 + 104008210 104008978 L1PB1 5432 + 4700 5420 68955 102 1 2 25 0 1 40 0 9 204 67 35 20 1 0 8 1 0 12 5 1 8 2 0 46 4 8 16 6 5 38 1 0 13 28 15 19 32 27 16 1 0 17 10 9 8 1 0 16 chain 21844 chr1 249250621 + 104009227 104009538 MER1A 529 - 6 312 120836 14 1 0 40 11 12 64 0 3 121 8 0 52 chain 177934 chr1 249250621 + 104025991 104028041 L1PA4 6152 + 2043 4096 21168 446 0 1 692 0 1 250 2 3 73 1 0 202 10 11 374 chain 181711 chr1 249250621 + 104028041 104030088 L1PA4 6152 + 4103 6152 20817 683 0 1 1187 3 7 22 8 0 138 0 5 6 chain 61085 chr1 249250621 + 104035237 104035908 L1PA3long 6157 - 0 673 52297 5 2 0 390 0 4 274 chain 33648 chr1 249250621 + 104038663 104039169 L1PA15 4387 + 3550 4045 78173 8 1 0 173 22 20 62 2 0 16 4 0 24 1 2 33 2 0 44 1 0 113 chain 112154 chr1 249250621 + 104052342 104053784 L1PA8 5853 - 0 1447 33625 92 2 1 15 2 1 37 0 1 17 1 0 10 2 1 70 2 0 14 5 7 25 2 1 288 0 4 186 0 1 91 0 4 51 4 5 8 1 0 192 0 1 4 1 0 320 chain 108518 chr1 249250621 + 104053789 104055182 L1P3 4156 + 2726 4131 34556 168 0 3 29 0 1 20 4 5 89 1 2 50 0 4 385 0 1 17 1 0 41 0 4 146 1 0 141 1 2 261 0 1 11 2 0 7 2 1 16 chain 21390 chr1 249250621 + 104061280 104061637 THE1B 368 - 0 368 122544 39 15 23 54 11 14 23 28 26 13 1 4 4 1 0 168 chain 90257 chr1 249250621 + 104073485 104074866 L1PB1 5432 - 9 1369 39555 5 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 2 1 8 2 0 15 26 12 15 1 0 41 8 7 12 2 1 49 21 15 12 3 2 4 1 0 24 3 0 11 8 5 244 25 28 119 0 2 60 0 8 59 10 9 28 4 6 14 6 11 447 chain 8630 chr1 249250621 + 104121481 104121579 L1PA3long 6157 + 6004 6102 167585 98 chain 7794 chr1 249250621 + 104132291 104132385 MER61E 571 - 477 571 172340 94 chain 57766 chr1 249250621 + 104143434 104144089 L1PA3long 6157 - 0 655 54101 57 0 1 79 2 1 517 chain 14239 chr1 249250621 + 104144089 104144250 L1PA3long 6157 + 5272 5433 143765 161 chain 14239 chr1 249250621 + 104220475 104220636 L1PA3long 6157 - 724 885 143766 161 chain 58375 chr1 249250621 + 104220636 104221291 L1PA3long 6157 + 5502 6157 53763 517 2 1 80 0 1 56 chain 119225 chr1 249250621 + 104337782 104339273 L1PA7 6471 - 5 1514 31323 8 0 2 171 1 2 141 5 6 201 0 17 292 0 2 12 1 2 112 7 1 540 chain 5294 chr1 249250621 + 104350277 104350338 L1PA6 6164 + 6101 6162 192077 61 chain 192770 chr1 249250621 + 104379162 104381548 L1PA6 6164 + 3738 6156 19789 62 4 5 552 0 8 314 0 1 292 5 6 64 1 10 244 0 4 18 0 4 357 7 0 234 0 1 5 0 3 80 0 7 147 chain 186765 chr1 249250621 + 104393674 104395868 L1PA5 6144 - 23 2226 20355 354 0 3 6 0 1 458 0 5 1376 chain 281156 chr1 249250621 + 104425547 104428732 L1PA4 6152 - 0 3176 14578 6 0 2 916 1 0 397 1 0 714 0 2 176 0 1 87 20 1 857 0 7 10 chain 3548 chr1 249250621 + 104455459 104455501 MLT1E2 623 + 114 156 214584 42 chain 303459 chr1 249250621 + 104464622 104468020 L1HS 6032 + 0 3922 13269 96 0 524 326 2 1 1615 1 2 1358 chain 35286 chr1 249250621 + 104470677 104471070 L1PA5 6144 - 4 397 75809 393 chain 26587 chr1 249250621 + 104474061 104474360 AluYd8 298 - 2 298 97703 182 2 0 8 1 0 106 chain 16363 chr1 249250621 + 104482390 104482636 MER30 238 - 9 238 137301 39 3 0 78 25 9 6 0 2 95 chain 28824 chr1 249250621 + 104508196 104508625 LTR7B 505 - 10 505 89784 41 14 13 9 5 0 70 1 0 4 7 6 72 0 2 26 6 68 69 0 10 105 chain 5600 chr1 249250621 + 104519197 104519327 MER70A 477 + 346 477 189084 40 51 52 39 chain 442925 chr1 249250621 + 104548768 104554358 L1PA8 5853 - 0 5568 8958 93 1 0 18 1 0 54 1 0 9 1 0 69 2 0 48 1 0 178 7 8 290 0 2 12 5 6 52 6 4 420 0 1 154 0 1 236 41 0 552 0 1 106 10 11 595 0 4 21 3 1 293 4 3 5 0 1 527 0 1 45 6 7 108 0 13 484 1 0 1109 8 12 14 chain 4763 chr1 249250621 + 104568315 104568375 MADE1 96 - 9 85 197777 25 0 16 35 chain 66092 chr1 249250621 + 104577890 104578594 L1HS 6032 - 705 1409 50058 704 chain 65448 chr1 249250621 + 104578594 104579291 L1HS 6032 + 5334 6031 50358 697 chain 90040 chr1 249250621 + 104587165 104588223 MER11C 1089 - 20 1089 39637 470 0 1 281 0 4 128 0 7 54 2 1 123 chain 11700 chr1 249250621 + 104594281 104594596 THE1B 368 - 59 368 153472 6 2 0 59 83 78 29 55 56 81 chain 49231 chr1 249250621 + 104594596 104595831 THE1B-int 1605 - 0 1569 59568 16 7 9 43 0 1 237 570 902 353 1 0 8 chain 21155 chr1 249250621 + 104618741 104619002 THE1D-int 1627 - 8 269 123359 261 chain 8347 chr1 249250621 + 104619015 104619132 MER82 654 - 406 526 169137 89 1 0 9 0 4 18 chain 9865 chr1 249250621 + 104650431 104650746 L1MC1 2226 - 44 338 161258 29 79 71 21 36 27 39 2 0 15 3 0 12 8 9 35 2 3 6 1 0 27 chain 182744 chr1 249250621 + 104656250 104658301 L1PA4 6152 + 4087 6143 20709 264 0 4 280 1 0 24 1 0 48 0 1 444 0 1 569 0 1 420 chain 80673 chr1 249250621 + 104677360 104678334 LTR5_Hs 974 - 0 974 43315 63 1 0 128 7 7 206 1 0 43 2 0 65 0 4 458 chain 8778 chr1 249250621 + 104682835 104682943 MER50 708 + 600 708 166774 108 chain 33965 chr1 249250621 + 104695228 104695603 L1PA4 6152 - 16 391 77669 375 chain 5322 chr1 249250621 + 104715533 104715596 LTR12C 1709 + 650 713 191808 63 chain 39785 chr1 249250621 + 104719493 104720352 MER41A 554 + 1 554 69649 86 3 7 182 7 8 82 317 0 29 7 13 146 chain 30042 chr1 249250621 + 104724096 104724534 MER4A1 472 + 0 461 84680 72 0 1 143 34 55 25 5 6 159 chain 531500 chr1 249250621 + 104757999 104765834 L1PA4 6152 - 9 6150 4020 961 1672 0 401 22 0 2362 11 7 1248 0 3 189 0 1 969 chain 139433 chr1 249250621 + 104758964 104760632 LTR12C 1709 - 0 1709 26231 125 1 2 354 0 4 107 3 1 5 1 0 56 0 41 177 1 0 729 5 4 104 chain 5341 chr1 249250621 + 104789510 104789574 L1PA5 6144 - 4 67 191633 56 1 0 7 chain 89054 chr1 249250621 + 104805265 104806272 LTR13 1007 - 0 1007 39983 1007 chain 24917 chr1 249250621 + 104813707 104814277 L1PB1 5432 + 4916 5422 105237 103 2 0 5 0 2 77 41 11 15 51 40 51 2 1 15 1 0 41 89 71 24 1 0 21 1 0 11 1 0 18 chain 83439 chr1 249250621 + 104814318 104815512 L1PA8 5853 - 0 1183 42144 40 0 4 13 2 3 33 1 0 19 2 1 52 6 4 68 8 6 46 1 0 16 0 1 31 0 1 29 6 7 232 5 0 17 6 7 136 0 2 73 9 1 5 3 0 117 0 1 218 chain 12962 chr1 249250621 + 104863910 104864188 L1PB1 5432 + 5168 5423 148382 52 22 20 41 40 27 16 2 0 8 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 503259 chr1 249250621 + 104874634 104881110 L1PA6 6164 - 8 6160 6656 104 1 0 32 15 16 606 1 0 69 15 14 272 4 3 134 0 1 262 1 0 268 0 1 316 0 1 352 0 1 8 11 6 260 0 1 1105 6 1 783 322 0 1030 2 1 86 1 0 4 0 1 222 5 6 28 0 5 85 6 8 60 chain 39731 chr1 249250621 + 104882981 104883479 L1PA7 6471 - 1289 1787 69710 196 0 1 30 1 0 271 chain 100730 chr1 249250621 + 104883483 104884744 L1PA7 6471 + 5195 6462 36574 347 2 1 78 0 3 6 0 1 62 0 1 4 2 1 231 1 2 349 0 1 38 4 5 137 chain 368699 chr1 249250621 + 104915069 104919300 L1PA4 6152 + 1905 6152 11131 5 3 0 268 1 0 68 0 2 127 0 1 221 0 1 579 0 1 1246 0 1 40 1 2 1049 0 1 380 0 6 233 0 6 10 chain 56485 chr1 249250621 + 104937259 104937875 L1PA4 6152 - 1 617 54860 616 chain 11547 chr1 249250621 + 104937876 104938015 L1P1 4361 + 1465 1622 154116 59 1 19 79 chain 14573 chr1 249250621 + 104950195 104950927 LTR12D 1347 - 379 760 142672 40 441 153 32 6 4 26 24 0 55 37 0 71 chain 25688 chr1 249250621 + 104951885 104952185 L1PA3long 6157 - 0 297 101342 147 1 0 143 2 0 7 chain 27534 chr1 249250621 + 104958662 104958998 THE1B-int 1605 - 5 339 94559 106 0 1 194 3 0 33 chain 23221 chr1 249250621 + 104964151 104964413 AluY 311 + 29 293 114591 102 0 2 160 chain 37009 chr1 249250621 + 104968381 104968898 MLT2A2 560 + 0 560 73506 196 28 35 105 11 36 34 0 11 143 chain 53022 chr1 249250621 + 104971195 104971850 L1PA8A 6298 - 753 1406 57004 44 1 2 11 1 0 75 2 1 351 2 1 168 chain 57078 chr1 249250621 + 104971854 104972568 L1PA8A 6298 + 5558 6286 54488 10 0 2 234 0 9 275 0 1 88 13 15 94 chain 45452 chr1 249250621 + 104989160 104989669 L1PA3long 6157 - 0 509 62545 509 chain 37519 chr1 249250621 + 105019870 105020311 L1PA7 6471 - 3 440 72791 6 4 0 431 chain 25846 chr1 249250621 + 105029901 105030225 L1PA5 6144 - 74 395 100669 62 19 16 243 chain 54947 chr1 249250621 + 105031238 105031888 LTR6A 649 + 0 649 55745 435 1 0 214 chain 29116 chr1 249250621 + 105052224 105052536 AluYa5 310 + 0 310 88478 132 2 0 178 chain 30159 chr1 249250621 + 105058637 105059120 MER9a3 513 - 21 511 84309 47 0 1 10 3 4 10 10 12 101 32 14 15 5 22 64 12 13 67 0 1 91 0 2 16 chain 37475 chr1 249250621 + 105077004 105077555 MLT2A2 560 + 0 560 72851 97 0 1 85 70 67 156 0 11 143 chain 15969 chr1 249250621 + 105084122 105084298 L1PA3long 6157 - 21 197 138460 176 chain 130546 chr1 249250621 + 105086228 105087694 L1PA3long 6157 - 0 1472 27956 147 0 1 246 1 7 879 1 0 192 chain 139597 chr1 249250621 + 105091838 105093794 L1PA8A 6298 + 4313 6283 26202 96 22 25 107 0 4 4 0 1 180 4 5 168 13 23 31 38 38 136 0 7 107 2 0 68 3 4 136 0 21 13 21 0 93 1 0 529 22 13 67 1 0 94 chain 405514 chr1 249250621 + 105099036 105104415 HERVL-int 5654 + 1 5654 9926 30 4 5 295 23 18 111 0 1 235 0 1 266 7 8 30 0 1 38 5 11 28 0 4 30 6 5 68 11 8 229 14 8 6 0 6 263 10 86 113 0 2 99 3 2 288 0 2 52 0 179 238 20 23 26 24 0 11 8 18 209 0 1 517 10 15 498 7 2 223 0 4 442 0 6 264 12 29 143 7 11 16 22 7 40 8 11 74 0 1 296 chain 271103 chr1 249250621 + 105120744 105124749 HERVL-int 5654 - 1546 5193 15134 8 2 0 122 2 1 14 318 2 44 1 3 443 0 2 296 6 7 60 0 1 403 9 8 49 4 5 92 8 8 284 1 0 439 8 0 76 10 14 202 9 5 290 0 1 110 2 0 244 0 5 97 1 2 66 7 8 41 56 14 79 1 0 4 1 2 96 chain 396992 chr1 249250621 + 105128696 105155109 L1PA7 6471 + 1 6462 10202 403 3 0 507 10 11 345 11 12 70 13 5 279 4 22 189 20765 780 17 9 0 455 0 4 238 2 0 7 0 2 137 1 2 11 0 1 51 6 10 277 1 0 320 5 18 189 0 1 584 2 1 69 0 1 10 15 14 160 1 0 9 6 7 25 0 4 57 0 5 31 0 1 155 4 1 123 0 3 334 0 4 169 1 0 188 1 2 133 3 0 8 chain 242200 chr1 249250621 + 105130540 105133694 L1PA7 6471 + 3244 6465 16662 165 6 9 43 1 10 31 0 1 24 17 4 243 1 12 32 4 3 13 3 4 87 0 1 194 13 57 359 0 5 423 0 1 313 1 2 25 0 5 31 0 1 166 0 2 196 1 0 753 3 0 6 chain 10397 chr1 249250621 + 105139557 105139687 LTR7B 505 + 0 130 158709 130 chain 60530 chr1 249250621 + 105141996 105142816 HERVH-int 3825 + 2970 3824 52564 45 1 0 32 9 8 37 0 3 333 34 18 288 0 48 12 5 6 24 chain 27432 chr1 249250621 + 105182740 105183035 AluYd8 298 - 5 298 94874 179 2 0 114 chain 498357 chr1 249250621 + 105201910 105207488 L1PA3long 6157 - 432 6153 6935 1778 0 1 715 0 1 372 1 0 447 0 1 494 0 1 205 0 7 747 0 4 36 7 135 628 0 1 148 chain 19927 chr1 249250621 + 105218124 105218377 AluY 311 + 6 255 127367 36 14 13 71 3 0 129 chain 7011 chr1 249250621 + 105224825 105224909 L1PA8 5853 - 9 93 177387 84 chain 444271 chr1 249250621 + 105236110 105241899 L1PA6 6164 + 601 6156 8924 362 2 1 139 1 15 314 3 4 10 1 0 460 2 0 207 0 3 97 1 3 22 0 1 78 11 8 357 1 2 17 0 3 258 0 1 54 3 4 74 304 51 44 0 2 257 1 4 5 3 0 29 0 1 214 0 1 38 1 2 620 0 8 278 9 2 21 2 0 3 7 0 4 0 1 213 0 1 968 0 1 45 1 0 248 chain 2957 chr1 249250621 + 105276643 105276678 L1MA4A 3247 - 3073 3108 225935 35 chain 25357 chr1 249250621 + 105292538 105292916 THE1C 375 - 0 375 102912 26 1 0 125 0 1 67 20 0 11 23 40 105 chain 564900 chr1 249250621 + 105312869 105318900 L1HS 6032 - 1 6032 211 6031 chain 23099 chr1 249250621 + 105320368 105320739 THE1B 368 - 0 368 115150 56 7 6 63 27 29 19 30 26 169 chain 7692 chr1 249250621 + 105338207 105338420 MLT1A0 366 + 88 301 172983 52 36 38 24 56 54 45 chain 5084 chr1 249250621 + 105357083 105357203 L1MC1 2226 + 1932 2047 194239 27 47 42 46 chain 9098 chr1 249250621 + 105359454 105359553 L1PA7 6471 + 6368 6467 165078 99 chain 186856 chr1 249250621 + 105360761 105362837 L1PA3long 6157 - 0 2076 20344 59 1 0 944 0 1 1072 chain 145853 chr1 249250621 + 105362838 105364444 L1PA3long 6157 + 2464 4069 25198 233 1 0 1372 chain 3535 chr1 249250621 + 105366348 105366585 MER20B 722 + 414 649 214793 27 99 98 28 64 63 19 chain 393942 chr1 249250621 + 105375426 105380203 L1PA6 6164 + 1360 6145 10325 92 3 0 256 0 7 243 14 14 210 1 0 150 0 2 601 1 2 273 0 1 83 6 8 227 5 8 88 0 1 494 13 11 118 0 1 393 6 0 1360 16 18 124 chain 566032 chr1 249250621 + 105386455 105392486 L1HS 6032 - 0 6031 151 6031 chain 13347 chr1 249250621 + 105400006 105400320 THE1B 368 - 41 368 146901 15 7 6 38 2 0 4 3 0 22 1 0 12 1 0 14 41 47 31 20 34 18 21 22 64 chain 88181 chr1 249250621 + 105407303 105408456 L1PA8 5853 - 0 1155 40307 80 14 13 19 3 1 51 1 0 10 2 1 70 2 0 46 1 0 264 0 13 272 3 0 3 2 0 4 0 1 213 0 1 93 chain 11506 chr1 249250621 + 105408469 105408616 L1P3 4156 + 3971 4116 154267 136 2 0 9 chain 28854 chr1 249250621 + 105428324 105428639 AluYa5 310 - 0 310 89653 192 1 0 21 4 0 97 chain 11579 chr1 249250621 + 105428639 105428793 L1PA16 3655 - 727 882 153987 16 0 5 9 4 0 125 chain 51779 chr1 249250621 + 105459008 105459666 L1PA7 6471 - 4844 5508 57658 145 0 1 81 0 3 40 7 8 211 1 2 173 chain 348345 chr1 249250621 + 105459666 105463945 L1PA7 6471 + 1712 6466 11655 11 6 1 796 0 2 109 0 2 760 0 1 103 1 0 347 1 13 22 0 429 211 0 2 462 0 3 15 0 1 87 0 1 359 0 1 28 22 4 132 0 3 83 3 15 82 1 2 301 1 30 336 chain 533436 chr1 249250621 + 105477777 105483800 L1PA3long 6157 - 8 6157 3782 82 0 1 351 4 5 321 0 2 739 1 0 1957 0 1 1448 1 0 338 0 128 79 7 0 137 0 1 393 13 14 152 chain 34869 chr1 249250621 + 105512309 105512770 LTR71A 459 + 0 459 76383 201 17 18 74 1 0 160 2 0 6 chain 14467 chr1 249250621 + 105559689 105560082 MSTB 430 - 0 414 142989 92 178 198 35 9 10 79 chain 6512 chr1 249250621 + 105589137 105589214 L1MA5A 2387 - 690 767 181148 77 chain 8312 chr1 249250621 + 105649490 105649618 LTR8 732 - 576 701 169318 89 16 13 23 chain 44699 chr1 249250621 + 105651613 105652237 LTR12 884 + 0 884 63377 25 9 8 22 0 107 193 0 22 78 14 13 209 13 146 61 chain 393167 chr1 249250621 + 105652258 105657034 HERV9-int 5642 + 0 4812 10347 294 0 3 11 0 1 244 0 23 20 10 9 9 5 0 23 0 1 75 0 4 78 2 0 170 3 4 138 3 0 16 6 6 765 1 4 654 7 6 505 0 1 1079 18 29 640 chain 35713 chr1 249250621 + 105658007 105658611 LTR12 884 + 0 869 75254 24 1 0 31 0 41 176 0 41 20 1 48 64 1 2 13 9 8 93 99 0 33 1 237 38 chain 71939 chr1 249250621 + 105710221 105711156 L1PA7 6471 + 5513 6470 47505 100 9 8 677 18 26 53 3 21 61 2 0 7 1 0 4 chain 19410 chr1 249250621 + 105724152 105724367 AluYa5 310 - 0 214 128922 111 2 1 102 chain 17715 chr1 249250621 + 105726429 105726662 L1PA5 6144 - 0 234 133658 154 6 7 73 chain 186775 chr1 249250621 + 105732137 105734218 L1PA4 6152 - 9 2108 20353 841 0 1 288 0 14 370 1 0 271 0 4 310 chain 22405 chr1 249250621 + 105756527 105756771 L1PA2 6032 - 2271 2515 118462 244 chain 207570 chr1 249250621 + 105756772 105759033 L1PA2 6032 + 3768 6027 18674 1411 1 0 82 2 1 765 chain 298418 chr1 249250621 + 105760988 105764471 L1PA5 6144 - 18 3514 13509 34 0 1 691 0 1 105 2 0 636 1 0 30 2 0 102 0 1 302 1 5 591 0 9 363 1 2 244 4 5 374 chain 27059 chr1 249250621 + 105788114 105788442 L1PA7 6471 - 44 372 96082 328 chain 324322 chr1 249250621 + 105803735 105807970 L1PA7 6471 - 10 6029 12426 84 8 0 8 0 8 38 1 2 230 0 1 4 2 0 96 0 3 354 15 9 329 0 9 79 8 12 97 31 11 90 18 19 25 3 0 11 0 2 205 16 7 53 0 4 401 0 1 436 1 0 42 0 346 116 0 1 612 3 4 17 7 1 172 0 2 196 0 20 168 0 2 11 0 1 77 0 1 122 0 1431 49 chain 60005 chr1 249250621 + 105815858 105816882 L1PB1 5432 - 12 1585 52820 21 1 0 8 1 0 21 1 0 24 2 0 14 1 0 9 2 0 10 35 23 9 1 0 45 1 0 15 11 9 21 39 35 12 4 2 17 10 597 184 4 6 37 0 1 50 15 5 273 12 10 106 0 1 8 chain 141851 chr1 249250621 + 105833278 105835039 L1PA6 6164 - 4 1764 25847 7 2 0 712 0 1 110 0 1 6 1 8 149 0 2 274 0 1 94 0 1 60 27 26 57 0 1 7 16 4 239 chain 28997 chr1 249250621 + 105837762 105838111 L1PA7 6471 + 6120 6470 88999 252 0 1 97 chain 328709 chr1 249250621 + 105847892 105851600 L1PA5 6144 - 7 3733 12250 260 0 10 566 0 4 1591 1 2 457 0 3 833 chain 24943 chr1 249250621 + 105866781 105867045 AluYb9 318 - 20 284 105092 264 chain 59047 chr1 249250621 + 105886412 105887085 L1PA4 6152 + 5478 6152 53367 202 2 0 5 0 2 113 0 1 351 chain 15939 chr1 249250621 + 105892234 105892537 L1PA14 3548 + 3137 3428 138549 49 10 0 35 1 0 88 1 10 13 17 12 35 4 2 12 1 0 5 8 7 10 1 0 13 chain 71989 chr1 249250621 + 105893766 105894853 MER11A 1151 + 0 1151 47476 68 1 100 37 1 0 4 0 1 18 1 0 66 4 0 131 18 19 94 5 6 63 0 1 76 5 6 145 25 1 11 8 15 22 18 0 36 0 1 60 6 7 148 2 1 14 chain 24247 chr1 249250621 + 105900569 105900844 L1PA4 6152 - 11 286 108958 275 chain 29176 chr1 249250621 + 105904435 105904742 AluYa5 310 - 3 310 88174 307 chain 41288 chr1 249250621 + 105934379 105934868 LTR15 485 + 0 485 67545 215 4 0 5 5 0 63 0 4 186 0 1 11 chain 13090 chr1 249250621 + 105960061 105960345 THE1B 368 + 8 368 147881 105 112 188 67 chain 4585 chr1 249250621 + 105970543 105970612 MER66C 541 - 462 525 199804 22 7 1 40 chain 22172 chr1 249250621 + 106064797 106065193 MLT2A2 560 - 63 560 119484 25 9 14 45 9 118 63 55 44 7 2 0 181 chain 20316 chr1 249250621 + 106070466 106070743 HERVL-int 5654 - 5391 5651 126189 226 17 0 34 chain 4683 chr1 249250621 + 106070745 106070799 MLT2A2 560 - 0 54 198725 54 chain 24371 chr1 249250621 + 106083452 106083814 THE1C 375 - 0 371 108251 25 1 0 102 52 62 182 chain 17757 chr1 249250621 + 106091459 106091670 L1PA7 6471 - 5 216 133546 211 chain 32506 chr1 249250621 + 106091680 106092045 L1PA4 6152 - 12 377 80013 365 chain 406705 chr1 249250621 + 106117565 106122064 L1PA3long 6157 + 1666 6157 9886 2272 0 1 1170 9 0 1048 chain 4687 chr1 249250621 + 106133241 106133486 Tigger3a 397 - 70 370 198676 37 29 0 10 137 221 32 chain 29401 chr1 249250621 + 106138493 106138803 AluYa5 310 - 0 310 87066 310 chain 142345 chr1 249250621 + 106172758 106174422 LTR12C 1709 - 0 1709 25754 195 0 4 282 0 4 106 3 1 5 1 0 240 0 40 832 chain 9769 chr1 249250621 + 106200516 106200626 L1P1 4361 + 3770 3880 161747 110 chain 203033 chr1 249250621 + 106201381 106203563 L1PA2 6032 + 3842 6024 18990 2182 chain 32764 chr1 249250621 + 106205387 106205745 L1PA4 6152 + 5792 6151 79589 25 0 1 333 chain 47598 chr1 249250621 + 106260981 106261511 L1PA4 6152 - 0 531 60765 339 0 1 191 chain 64696 chr1 249250621 + 106261511 106262273 L1P1 4361 + 3581 4341 50697 724 1 0 23 2 1 12 chain 14594 chr1 249250621 + 106272477 106272649 L1PA2 6032 + 5706 5873 142614 160 5 0 7 chain 13923 chr1 249250621 + 106272649 106272801 L1PA2 6032 + 5879 6031 144844 152 chain 28220 chr1 249250621 + 106276676 106276983 AluYa5 310 + 0 306 92233 97 1 0 209 chain 11963 chr1 249250621 + 106286580 106286714 L1PA2 6032 - 1 135 152348 134 chain 103118 chr1 249250621 + 106289503 106290875 L1PA8 5853 - 0 1371 35966 92 2 1 19 3 2 60 2 1 71 2 0 43 1 0 476 0 1 77 2 0 212 4 10 306 chain 66003 chr1 249250621 + 106290876 106291681 L1PA8 5853 + 3653 4465 50096 43 0 3 243 0 5 387 1 0 131 chain 30528 chr1 249250621 + 106291712 106292054 L1PA4 6152 + 5808 6151 83374 34 0 1 308 chain 4429 chr1 249250621 + 106295894 106295969 MLT2A1 477 + 417 477 201602 10 14 0 30 1 0 20 chain 424438 chr1 249250621 + 106295969 106301939 HERVL-int 5654 + 0 5654 9433 698 9 10 163 0 5 296 3 4 23 0 9 9 362 0 194 1 13 45 47 44 96 0 2 194 1 0 4 5 2 22 4 5 835 2 0 5 9 11 177 1 0 4 4 5 412 1 0 5 1 2 29 8 0 232 0 1 410 0 2 125 0 1 6 0 1 573 4 5 430 1 17 33 17 24 41 1 0 182 0 2 246 chain 16268 chr1 249250621 + 106323065 106323362 THE1C 375 + 65 374 137554 23 24 30 49 30 31 87 4 9 42 0 1 12 1 0 25 chain 95614 chr1 249250621 + 106329008 106330064 L1PA3long 6157 - 2 1058 37930 1056 chain 19063 chr1 249250621 + 106330064 106330271 L1PA3long 6157 + 4901 5108 129929 207 chain 68273 chr1 249250621 + 106338402 106339388 LTR12D 1347 + 46 1347 49134 203 47 83 105 0 150 107 0 17 128 14 27 31 3 0 12 0 1 25 11 113 35 1 0 120 0 3 6 3 0 135 chain 91270 chr1 249250621 + 106346501 106347719 L1PA8 5853 + 4611 5853 39208 321 2 3 71 0 2 140 1 11 369 0 17 19 6 5 39 3 1 71 1 0 7 5 1 6 0 4 37 7 6 19 2 1 92 chain 57335 chr1 249250621 + 106352411 106353273 HERVL-int 5654 - 4776 5646 54319 30 12 16 105 108 108 138 0 3 202 0 1 267 chain 16246 chr1 249250621 + 106353539 106353829 MLT2A2 560 - 259 544 137631 56 55 52 15 11 9 153 chain 8143 chr1 249250621 + 106353979 106354079 L1MA1 4479 + 2621 2719 170271 37 1 0 10 1 0 51 chain 146184 chr1 249250621 + 106358301 106360032 L1PA5 6144 - 0 1734 25136 18 0 1 391 3 4 44 29 29 222 1 0 337 0 1 476 0 1 210 chain 122927 chr1 249250621 + 106362304 106363684 L1HS 6032 - 3144 4527 30041 432 0 3 948 chain 219796 chr1 249250621 + 106363684 106366113 L1PA3long 6157 + 3722 6147 17893 161 4 0 2264 chain 24673 chr1 249250621 + 106385106 106385406 L1PA5 6144 - 0 300 106595 300 chain 458875 chr1 249250621 + 106421465 106427360 L1PA7 6471 - 15 6060 8447 614 0 1 131 3 0 84 7 6 17 0 4 171 0 1 95 12 5 29 1 0 70 0 1 254 0 1 25 2 0 314 1 0 23 0 2 51 0 1 559 3 0 53 0 2 445 15 13 42 8 9 190 4 0 6 4 8 438 18 56 9 0 107 95 0 1 260 1 2 477 1 0 62 6 7 186 0 1 213 0 1 369 0 8 68 5 6 42 0 1 38 3 1 157 16 15 198 chain 4117 chr1 249250621 + 106457465 106457532 MSTB 430 - 354 420 205682 46 7 6 14 chain 25230 chr1 249250621 + 106473459 106473815 THE1B 368 + 6 368 103588 38 5 20 108 3 4 124 2 0 28 8 0 40 chain 11410 chr1 249250621 + 106482266 106482423 L1PB 1623 - 633 798 154642 25 0 2 72 1 6 45 0 1 14 chain 345919 chr1 249250621 + 106485936 106489991 L1PA5 6144 - 5 4095 11730 108 1 0 1409 1 0 278 0 8 387 3 2 438 0 1 246 13 17 69 1 0 82 0 1 111 0 2 201 0 2 394 0 4 77 8 23 28 0 2 200 chain 9914 chr1 249250621 + 106490002 106490475 L1P2 5180 + 1363 1836 56906 80 1 0 385 0 1 7 chain 67844 chr1 249250621 + 106490519 106491274 L1PA3long 6157 - 5 761 49268 142 0 1 613 chain 98105 chr1 249250621 + 106491274 106509703 L1PA3long 6157 + 4338 6155 37250 1067 16981 368 241 0 1 140 chain 4150 chr1 249250621 + 106492341 106492539 L1P2 5180 + 1839 2036 56906 109 1 0 88 chain 71770 chr1 249250621 + 106513076 106513901 L1PA4 6152 + 5318 6143 47580 825 chain 3919 chr1 249250621 + 106523759 106523804 THE1C-int 1605 + 161 206 208566 45 chain 24890 chr1 249250621 + 106560151 106560449 L1PA2 6032 + 5734 6031 105407 132 1 6 8 5 0 132 1 0 19 chain 25886 chr1 249250621 + 106631572 106631900 L1PA7 6471 - 3 326 100496 7 5 0 57 2 0 8 9 11 240 chain 22044 chr1 249250621 + 106641491 106641772 AluSc8 310 + 4 283 120052 130 0 1 18 5 2 128 chain 157402 chr1 249250621 + 106656784 106658790 L1PA7 6471 + 3810 6467 23677 19 15 0 63 0 1 778 0 4 44 0 1 88 2 0 103 10 687 24 0 2 116 24 6 391 2 1 49 0 2 278 chain 3171 chr1 249250621 + 106659461 106659496 MER41-int 2638 + 116 151 221551 35 chain 3252 chr1 249250621 + 106701690 106701725 MER11A 1151 + 0 35 219974 35 chain 19654 chr1 249250621 + 106702229 106702627 HERVK11-int 2540 + 1071 1422 128239 49 20 19 34 31 27 15 10 0 11 1 0 27 12 1 36 21 1 131 chain 7338 chr1 249250621 + 106702628 106702712 HERVK11-int 2540 - 314 398 175177 84 chain 473427 chr1 249250621 + 106706541 106712021 L1PA4 6152 + 759 6141 7933 1093 0 1 1408 0 15 741 114 0 2124 chain 135808 chr1 249250621 + 106714362 106716090 L1PA7 6471 + 4680 6438 26879 50 0 1 222 1 2 119 29 6 113 0 22 353 0 1 45 0 3 235 13 15 92 1 15 23 1 9 125 0 1 306 chain 15811 chr1 249250621 + 106716810 106717040 L1PA10 4194 - 33 257 138925 11 1 0 27 14 11 37 2 0 138 chain 27782 chr1 249250621 + 106726365 106726718 THE1A 353 + 0 353 93760 24 0 1 84 2 1 243 chain 117887 chr1 249250621 + 106726718 106728294 THE1A-int 1579 + 0 1574 31836 113 0 3 156 1 0 158 7 8 36 20 27 219 0 1 71 2 1 147 0 1 257 7 8 33 10 0 128 0 4 162 8 0 41 chain 27134 chr1 249250621 + 106728299 106728651 THE1A 353 + 0 353 95817 25 1 2 83 1 0 215 0 1 27 chain 30510 chr1 249250621 + 106730951 106731320 L1PA8A 6298 - 8 379 83406 99 0 1 200 0 1 70 chain 29657 chr1 249250621 + 106731387 106731774 L1PA8A 6298 + 5454 5853 86039 30 1 0 165 5 18 186 chain 39362 chr1 249250621 + 106755421 106755893 L1P1 4361 - 20 489 70231 12 2 1 23 1 0 155 1 0 278 chain 24860 chr1 249250621 + 106755894 106756175 L1PA4 6152 + 5536 5817 105566 281 chain 28099 chr1 249250621 + 106756175 106756500 L1PA4 6152 + 5818 6143 92650 325 chain 108690 chr1 249250621 + 106781969 106783166 L1PA3long 6157 - 0 1197 34470 1197 chain 159018 chr1 249250621 + 106783166 106785011 L1PA4 6152 + 4079 6006 23459 124 6 7 751 34 114 35 0 1 895 chain 13005 chr1 249250621 + 106785012 106785155 L1PA4 6152 + 6008 6151 148226 143 chain 24453 chr1 249250621 + 106799686 106799975 AluSp 311 - 11 300 107788 289 chain 11310 chr1 249250621 + 106818485 106818641 Tigger3a 397 + 159 316 155032 140 5 6 11 chain 71853 chr1 249250621 + 106826940 106827715 L1PA2 6032 - 4 779 47539 775 chain 21648 chr1 249250621 + 106841950 106842195 L1PA4 6152 + 5898 6143 121577 245 chain 248263 chr1 249250621 + 106853818 106856741 L1PA4 6152 - 0 2944 16350 6 0 2 105 0 1 307 0 1 425 0 6 634 1 0 30 1 0 822 0 1 537 3 15 52 chain 74055 chr1 249250621 + 106856746 106857612 L1P2 5180 + 1731 2598 46482 5 0 2 366 1 0 494 chain 41171 chr1 249250621 + 106860750 106861294 MLT2A2 560 - 1 560 67680 53 0 1 88 1 12 193 7 8 57 3 5 142 chain 516416 chr1 249250621 + 106872046 106878143 L1PA5 6144 + 14 6132 5538 460 6 5 1098 11 12 203 8 9 216 0 1 559 0 2 452 0 1 67 1 2 75 2 1 81 0 2 60 0 6 1703 0 8 1095 chain 262227 chr1 249250621 + 106887419 106891110 MER61-int 3695 - 7 3685 15571 30 6 0 6 4 10 28 11 13 239 8 7 9 1 0 14 10 11 55 4 5 100 1 0 4 7 4 104 0 1 184 0 1 4 8 6 88 1 0 152 4 1 78 1 0 6 0 1 102 0 1 39 10 0 155 1 2 51 0 1 44 9 13 308 3 4 196 0 4 68 2 0 44 9 12 51 1 0 231 6 7 340 7 6 206 2 0 94 0 1 4 12 11 50 0 1 5 1 0 64 1 2 138 2 1 162 0 1 9 4 1 52 1 0 7 2 0 7 10 8 14 chain 83285 chr1 249250621 + 106900829 106901918 MER11A 1151 - 0 1145 42213 14 8 7 188 0 1 48 1 33 55 1 0 52 0 12 352 0 1 86 1 0 6 4 6 56 0 4 146 0 8 47 7 6 17 chain 5890 chr1 249250621 + 106904410 106904480 L1P4 1494 - 1245 1315 186276 70 chain 51685 chr1 249250621 + 106944126 106945203 L1PB1 5432 + 4535 5403 57829 25 0 3 4 1 0 50 34 23 68 1 0 59 1 9 37 1 2 152 1 0 133 178 5 12 3 0 21 1 0 9 16 11 11 2 0 51 2 1 10 7 6 32 1 0 11 1 0 16 67 50 24 1 0 21 1 0 12 chain 133477 chr1 249250621 + 106954441 106955960 SVA_D 2077 + 18 2053 27328 576 0 40 53 0 40 151 0 83 75 0 2 65 1 352 598 chain 20613 chr1 249250621 + 106958495 106958793 AluSc 308 + 0 296 125250 9 1 0 226 32 31 30 chain 23667 chr1 249250621 + 106965367 106965651 AluY 311 + 12 297 112214 120 0 1 164 chain 58707 chr1 249250621 + 106968259 106968945 L1HS 6032 + 5353 6032 53579 149 8 17 135 14 0 373 2 0 5 chain 17145 chr1 249250621 + 106969040 106969237 L1PA5 6144 + 5761 5958 135184 50 0 1 79 1 0 67 chain 15420 chr1 249250621 + 106969237 106969421 L1PA5 6144 + 5959 6143 140132 184 chain 31373 chr1 249250621 + 106969848 106970270 THE1B-int 1605 + 1188 1605 81869 100 14 11 194 0 1 45 3 0 66 chain 25443 chr1 249250621 + 106985045 106985351 AluYk4 311 - 1 303 102488 104 5 1 197 chain 4033 chr1 249250621 + 107002382 107002637 L1MA8 2339 + 2049 2264 206877 26 185 146 36 1 0 7 chain 48138 chr1 249250621 + 107042207 107042789 L1PA7 6471 + 5873 6465 60372 142 0 9 77 0 1 363 chain 13111 chr1 249250621 + 107075801 107075952 L1PA4 6152 - 16 167 147802 151 chain 125900 chr1 249250621 + 107088239 107089762 L1PA6 6164 - 2 1503 29131 4 1 0 6 0 5 933 0 1 38 30 0 58 1 4 452 chain 32372 chr1 249250621 + 107094908 107095348 L1PA10 4194 - 33 475 80239 11 1 0 8 2 8 16 4 1 258 1 2 105 1 0 33 chain 5290 chr1 249250621 + 107096500 107096578 L1P3 4156 + 4061 4136 192115 46 2 0 7 2 1 21 chain 77028 chr1 249250621 + 107102386 107103390 L1PA7 6471 + 5455 6470 44954 98 10 1 38 5 6 23 1 0 5 0 1 145 4 16 487 0 1 27 4 5 13 0 1 132 0 4 12 chain 4209 chr1 249250621 + 107124301 107124418 L1PREC2 3366 + 2932 3030 204437 19 37 20 35 6 4 20 chain 444449 chr1 249250621 + 107128312 107133951 HERVL-int 5654 - 0 5654 8919 27 10 3 233 0 8 160 11 0 168 0 6 67 0 3 48 4 0 45 0 1 96 4 11 409 1 0 421 0 1 264 18 24 98 0 2 343 2 3 196 2 4 98 4 0 125 1 0 628 7 8 110 0 6 45 2 1 312 0 2 757 5 1 19 0 3 5 3 0 384 0 1 63 0 1 16 0 1 145 6 5 277 chain 13788 chr1 249250621 + 107133997 107134189 MLT2A1 477 - 291 477 145310 5 3 0 11 8 5 165 chain 200421 chr1 249250621 + 107138995 107141290 L1PA5 6144 - 0 2303 19180 145 4 5 1372 2 0 272 0 8 467 0 1 33 chain 451597 chr1 249250621 + 107165409 107171076 L1PA7 6471 - 7 5729 8714 148 6 7 442 9 1 242 1 4 665 1 0 39 0 1 210 17 28 416 0 1 287 0 1 11 0 1 250 2 1 217 0 1 4 6 3 302 0 7 529 0 2 10 4 0 140 0 1 324 9 19 414 44 62 63 0 1 16 2 1 209 12 12 18 6 5 144 0 11 243 0 3 91 0 1 114 chain 22269 chr1 249250621 + 107179159 107179415 AluY 311 + 32 291 119036 100 0 1 65 0 2 91 chain 4880 chr1 249250621 + 107190129 107190372 MLT1D 503 - 183 448 196483 44 3 0 6 69 96 18 2 0 11 10 0 7 54 64 19 chain 63255 chr1 249250621 + 107195416 107196140 L1PA5 6144 - 35 759 51338 112 2 0 5 1 3 604 chain 11737 chr1 249250621 + 107203981 107204247 MSTA 426 + 0 292 153313 89 42 13 12 0 57 28 2 0 5 1 0 12 40 41 35 chain 34616 chr1 249250621 + 107210526 107211091 L1MA1 4479 + 3615 4162 76731 99 1 0 21 1 0 4 1 0 16 1 0 66 6 5 13 12 10 10 1 0 88 1 0 5 3 0 22 1 0 104 1 0 26 10 8 30 2 1 9 1 0 10 chain 23211 chr1 249250621 + 107240630 107240943 THE1A 353 + 26 345 114638 49 3 10 24 2 1 83 0 1 65 1 2 52 2 0 32 chain 3664 chr1 249250621 + 107280893 107280940 L1MB8 1703 + 1528 1577 212498 42 0 2 5 chain 24438 chr1 249250621 + 107308093 107308398 L1PA7 6471 - 11 318 107870 138 0 7 7 8 1 29 0 2 123 chain 17550 chr1 249250621 + 107353471 107353790 THE1D 372 - 40 372 134128 90 20 36 13 2 0 4 3 0 13 6 10 80 21 22 18 3 0 46 chain 19767 chr1 249250621 + 107358102 107358319 L1PA3long 6157 + 5939 6157 127917 75 0 1 142 chain 3670 chr1 249250621 + 107384108 107384160 L1MB3 1562 + 1252 1516 212387 41 0 212 11 chain 25192 chr1 249250621 + 107389641 107390061 L1MA1 4479 + 3714 4120 103787 25 28 25 65 2 1 15 2 0 14 1 0 88 9 5 116 11 10 29 2 0 13 chain 3079 chr1 249250621 + 107392819 107392934 MER31B 477 + 111 307 223356 15 5 127 15 3 4 9 42 0 26 chain 519708 chr1 249250621 + 107395577 107401984 L1PA7 6471 + 3 6461 5187 145 0 6 6 15 9 242 0 1 421 7 9 920 0 4 291 0 1 26 12 16 48 2 30 189 1 2 263 0 2 255 0 4 414 2 0 87 18 20 186 0 3 5 1 0 4 3 1 223 2 0 177 0 1 300 1 0 311 1 0 4 1 0 42 0 4 818 1 0 130 0 1 181 0 3 159 10 11 329 0 7 7 7 0 140 chain 19673 chr1 249250621 + 107402478 107402834 THE1B 368 - 0 368 128188 61 22 8 56 35 45 17 1 2 7 1 0 64 0 1 35 13 28 44 chain 10394 chr1 249250621 + 107403617 107403763 L1PA8 5853 + 5709 5853 158725 27 7 6 18 1 0 93 chain 7776 chr1 249250621 + 107407472 107407667 MLT1A 405 + 60 279 172441 54 15 16 22 0 3 5 1 0 14 55 76 29 chain 59209 chr1 249250621 + 107420076 107421497 HSMAR1 1287 + 24 1256 53277 100 4 1 77 12 13 131 0 3 34 1 2 148 617 426 297 chain 26847 chr1 249250621 + 107439589 107439894 AluY 311 + 4 310 96814 128 0 1 177 chain 38716 chr1 249250621 + 107446881 107447403 THE1D-int 1627 - 5 1187 71128 98 1 14 243 3 656 51 7 0 104 0 1 15 chain 22983 chr1 249250621 + 107466526 107466796 L1PA4 6152 + 5866 6138 115702 219 0 2 51 chain 358034 chr1 249250621 + 107472659 107476743 L1PA5 6144 - 14 4129 11399 832 0 3 8 8 27 905 7 11 538 0 1 937 4 5 796 0 3 49 chain 190587 chr1 249250621 + 107532338 107535096 L1PB2 3958 + 1079 3838 19991 178 1 3 262 0 1 4 1 0 25 1 4 18 5 4 18 7 8 43 0 3 40 0 4 196 1 9 7 9 0 328 0 1 56 11 14 63 5 7 105 5 1 36 6 9 44 7 6 98 17 18 14 0 1 6 6 8 129 13 4 68 1 0 49 0 1 166 1 3 166 2 0 19 1 2 31 0 3 16 2 0 61 2 0 12 2 0 87 1 0 25 13 5 46 7 6 61 2 1 71 2 0 21 0 6 58 chain 77734 chr1 249250621 + 107539037 107539978 L1PA5 6144 - 3 899 44639 143 1 3 7 1 0 156 1 0 68 46 1 518 chain 4125 chr1 249250621 + 107539414 107539460 L1PA5 6144 - 7 53 198924 46 chain 77399 chr1 249250621 + 107539981 107540840 L1PA5 6144 + 4376 5235 44780 859 chain 11527 chr1 249250621 + 107565232 107565375 L1PA7 6471 + 5948 6091 154189 143 chain 32541 chr1 249250621 + 107565376 107565752 L1PA7 6471 + 6093 6467 79959 366 2 0 8 chain 29871 chr1 249250621 + 107565962 107566297 L1PA4 6152 + 5810 6146 85201 228 0 1 107 chain 122812 chr1 249250621 + 107581661 107583233 THE1B-int 1605 + 0 1599 30110 25 4 3 353 8 9 40 0 25 24 8 8 583 0 1 55 0 1 472 chain 134101 chr1 249250621 + 107587193 107588793 LTR12C 1709 + 0 1709 27181 93 1 0 193 15 1 16 0 1 218 7 8 189 0 118 157 0 2 120 4 2 106 0 4 481 chain 26073 chr1 249250621 + 107589522 107589944 LOR1b 457 - 27 457 99735 13 0 7 21 4 7 39 0 10 87 7 8 56 1 2 35 12 7 103 25 16 19 chain 24904 chr1 249250621 + 107598672 107598979 AluSp 311 + 0 306 105316 115 0 2 180 3 0 9 chain 20499 chr1 249250621 + 107603468 107603699 AluY 311 + 4 236 125631 128 0 1 103 chain 39711 chr1 249250621 + 107616863 107617537 L1PB1 5432 + 4782 5423 69741 312 24 20 19 1 0 11 1 0 14 5 1 9 2 0 52 2 1 14 10 9 38 1 0 11 24 15 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 10 1 0 9 chain 31581 chr1 249250621 + 107630746 107631121 L1PA7 6471 - 6 382 81522 156 5 6 214 chain 23859 chr1 249250621 + 107636090 107636447 THE1B 368 + 0 368 111131 169 1 0 25 45 50 83 0 7 34 chain 3580 chr1 249250621 + 107676444 107676488 MADE2 80 - 1 45 213979 44 chain 41873 chr1 249250621 + 107707399 107707952 LTR10A 586 - 12 586 66800 79 15 16 51 1 17 94 0 3 77 15 15 109 0 1 112 chain 8148 chr1 249250621 + 107712618 107712721 MLT2C1 407 - 224 327 170244 103 chain 162537 chr1 249250621 + 107733059 107734869 L1PA5 6144 - 9 1818 22994 1738 1 0 71 chain 172134 chr1 249250621 + 107756766 107759308 L1PB1 5432 - 10 2496 21798 18 1 0 12 1 0 22 1 0 5 0 1 18 2 0 6 16 14 18 23 12 16 1 0 44 18 16 52 2 0 9 18 13 8 1 0 24 15 11 143 19 8 201 0 1 90 1 2 37 10 8 166 2 3 110 9 5 123 0 2 211 15 8 16 8 9 174 1 0 4 4 2 14 2 1 26 18 16 787 chain 115748 chr1 249250621 + 107779558 107781129 THE1B-int 1605 + 0 1605 32544 12 4 6 114 0 1 290 0 1 5 8 32 198 18 17 68 12 3 8 0 9 16 18 14 473 0 1 126 4 3 54 0 11 143 chain 3206 chr1 249250621 + 107793073 107793109 L1PA8 5853 - 243 279 220834 36 chain 6781 chr1 249250621 + 107793109 107793183 L1PA7 6471 + 6387 6461 179097 74 chain 12084 chr1 249250621 + 107808866 107809226 MSTA 426 - 1 420 151860 106 194 253 60 chain 9508 chr1 249250621 + 107813826 107813939 L1PA3long 6157 - 0 116 163032 12 0 3 101 chain 9574 chr1 249250621 + 107834857 107834990 MER50 708 - 22 153 162724 39 0 2 21 4 0 69 chain 89437 chr1 249250621 + 107847353 107848445 L1PA7 6471 - 1 1082 39827 11 2 0 20 4 0 121 2 1 607 1 0 85 1 2 66 4 0 168 chain 14711 chr1 249250621 + 107912992 107913320 L1PB1 5432 - 5 298 142233 4 1 0 5 1 0 14 2 1 12 1 0 21 1 0 24 2 0 6 4 0 9 1 0 4 2 0 19 24 12 16 1 0 27 0 1 16 21 19 50 2 0 6 9 5 10 1 0 12 chain 10166 chr1 249250621 + 107940810 107940919 L1PA2 6032 + 5919 6028 159769 109 chain 4078 chr1 249250621 + 108032658 108032765 MER5A 189 - 55 153 206213 47 26 27 17 10 0 7 chain 27549 chr1 249250621 + 108052113 108052487 THE1C 375 + 0 375 94507 138 1 5 36 0 2 5 0 1 7 10 4 177 chain 113158 chr1 249250621 + 108062831 108064097 L1PA4 6152 - 1 1257 33332 147 0 1 40 0 1 63 6 1 78 7 0 925 chain 12786 chr1 249250621 + 108073658 108073798 L1PA6 6164 - 8 148 149110 140 chain 163768 chr1 249250621 + 108111136 108113071 HERVL-int 5654 + 2879 4871 22838 201 0 3 417 0 1 123 0 1 56 0 1 109 1 34 119 0 4 339 4 0 256 0 18 310 chain 77106 chr1 249250621 + 108125037 108125886 L1PA3long 6157 - 1 850 44913 849 chain 117523 chr1 249250621 + 108125888 108127191 L1PA3long 6157 + 4002 5308 31957 352 0 4 233 1 0 285 2 1 236 0 1 194 chain 56578 chr1 249250621 + 108174100 108174730 L1PA4 6152 - 1 630 54806 17 1 0 612 chain 144598 chr1 249250621 + 108176627 108178244 L1PA4 6152 + 4523 6143 25381 833 0 3 784 chain 44444 chr1 249250621 + 108184692 108185233 MER41A 554 + 0 554 63641 206 0 13 335 chain 26221 chr1 249250621 + 108193183 108193481 L1PA3long 6157 - 0 297 99122 148 2 0 23 0 1 125 chain 12654 chr1 249250621 + 108193481 108193620 L1PA3long 6157 + 5719 5859 149630 104 0 1 35 chain 42558 chr1 249250621 + 108194621 108195161 MER41A 554 + 13 554 65951 368 12 11 4 0 1 86 0 1 70 chain 93867 chr1 249250621 + 108200797 108201835 L1PA4 6152 - 226 1264 38394 1038 chain 19764 chr1 249250621 + 108241287 108241644 THE1D 372 - 1 372 127924 133 54 60 6 0 6 58 5 6 27 18 19 56 chain 11326 chr1 249250621 + 108254876 108255084 MER30 238 + 0 238 154979 17 19 41 41 6 0 7 8 0 7 2 25 50 1 0 50 chain 137060 chr1 249250621 + 108259051 108260661 L1PA6 6164 - 2195 3803 26599 271 4 0 397 0 1 95 8 9 279 1 0 4 0 1 551 chain 184701 chr1 249250621 + 108260661 108262838 L1PA6 6164 + 3985 6161 20523 662 1 2 727 4 0 129 1 4 484 25 24 144 chain 518616 chr1 249250621 + 108274865 108280983 L1PA6 6164 + 0 6162 5320 132 0 1 890 1 0 629 10 41 434 0 1 47 0 1 371 0 3 639 0 1 43 0 1 335 0 2 18 0 1 101 3 0 671 0 4 956 0 1 491 1 0 60 1 2 123 17 18 145 chain 3193 chr1 249250621 + 108287229 108287282 MADE1 96 - 26 96 221055 25 5 22 23 chain 3678 chr1 249250621 + 108290313 108290358 MIRb 242 - 112 157 212264 45 chain 33035 chr1 249250621 + 108344038 108344469 MER57A1 433 + 0 433 79163 245 0 1 34 7 8 145 chain 10469 chr1 249250621 + 108349466 108349696 MER2 342 - 68 303 158392 22 36 37 52 6 0 53 3 4 22 0 6 6 13 16 17 chain 23370 chr1 249250621 + 108373029 108373352 MER83C 372 + 0 335 113816 107 17 29 39 1 0 155 0 1 4 chain 4546 chr1 249250621 + 108373646 108373698 Tigger4a 237 - 0 52 200280 52 chain 516957 chr1 249250621 + 108386647 108393342 L1PA7 6471 + 3 6459 5487 165 3 4 442 3 20 139 1 0 408 0 9 360 6 7 311 1 2 5 1 0 133 0 1 170 0 1 210 0 33 244 9 1 76 0 3 240 1 0 47 0 1 468 1 0 46 0 4 389 0 1 13 0 2 8 0 5 37 1 0 68 312 0 128 6 0 57 0 8 394 1 3 244 0 1 4 1 0 70 14 8 312 0 5 163 0 5 142 5 1 130 0 3 121 1 0 339 1 0 4 0 1 240 chain 8332 chr1 249250621 + 108393724 108393815 AluYk12 309 + 212 303 169213 91 chain 66389 chr1 249250621 + 108412298 108413264 L1PB1 5432 - 15 959 49915 13 1 0 13 1 0 19 1 2 24 2 0 13 2 1 5 2 0 19 16 6 6 2 0 6 0 2 7 1 0 44 1 0 16 2 1 52 2 0 9 2 0 3 2 0 10 1 0 11 1 0 19 3 0 7 0 8 16 1 3 456 6 0 13 0 4 136 chain 33707 chr1 249250621 + 108472390 108472948 L1MA3 4352 + 3811 4352 78088 215 1 0 67 61 44 38 0 4 11 0 3 67 9 7 15 1 0 6 1 0 26 2 1 13 1 0 24 chain 4689 chr1 249250621 + 108475520 108475649 MLT1D 503 + 375 503 198650 19 59 58 51 chain 17771 chr1 249250621 + 108501250 108501469 L1PA7 6471 - 3 219 133507 9 3 0 207 chain 44114 chr1 249250621 + 108529977 108530535 MLT2A2 560 - 0 560 64068 102 9 10 243 0 1 204 chain 29663 chr1 249250621 + 108535737 108536047 AluYa5 310 - 0 310 86010 310 chain 26494 chr1 249250621 + 108547715 108548061 THE1C 375 + 0 347 98071 173 8 9 165 chain 313015 chr1 249250621 + 108561775 108565697 HERVL-int 5654 - 28 5654 12894 46 0 3 36 18 19 26 0 1 41 0 1 22 0 1 31 0 1 33 4 7 108 1 2 365 7 8 36 0 1 256 6 5 58 1 95 68 4 6 169 9 7 152 0 1 215 0 3 24 15 12 85 0 1 109 1 0 759 0 1585 22 0 1 168 0 2 299 0 8 728 chain 20658 chr1 249250621 + 108566422 108566789 MLT2A2 560 - 80 560 125117 16 4 9 42 0 11 12 1 99 59 65 63 34 6 7 128 chain 57029 chr1 249250621 + 108605146 108606063 L1PA15 4387 + 3465 4366 54517 13 0 7 118 0 1 209 8 6 69 2 0 44 1 0 116 0 1 51 22 20 11 1 0 54 1 0 18 19 14 42 61 56 12 13 8 21 1 0 10 chain 7731 chr1 249250621 + 108642892 108642988 L1PA16 3655 + 3465 3561 172707 96 chain 20295 chr1 249250621 + 108653517 108653791 AluSc5 308 + 28 301 126241 113 3 0 6 0 3 107 10 9 35 chain 60561 chr1 249250621 + 108659145 108659877 L1PA8 5853 - 0 725 52534 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 46 1 0 434 chain 27398 chr1 249250621 + 108673946 108674300 THE1A 353 - 0 353 94977 243 6 5 105 chain 125712 chr1 249250621 + 108674300 108675866 THE1A-int 1579 - 0 1579 29184 15 0 1 41 0 2 39 1 0 81 0 1 607 1 2 53 0 9 115 5 6 53 3 1 304 0 1 248 chain 249474 chr1 249250621 + 108687069 108690147 L1PA7 6471 - 16 3116 16284 664 0 11 75 5 7 70 0 5 200 6 7 74 9 11 33 4 1 110 0 9 75 0 1 44 0 1 186 19 7 261 2 1 419 0 1 14 1 0 21 0 1 230 0 1 359 3 7 194 chain 132013 chr1 249250621 + 108702086 108703621 SVA_D 2077 - 0 2077 27634 18 2 0 620 0 535 99 0 80 141 73 0 559 0 2 23 chain 3020 chr1 249250621 + 108702966 108703030 SVA_D 2077 - 1337 1402 185720 9 10 13 28 2 0 15 chain 541626 chr1 249250621 + 108704421 108710431 L1PA3long 6157 - 0 6150 2569 142 0 1 189 0 3 1464 7 11 1137 2 0 41 0 2 2002 0 3 258 0 128 623 1 2 144 chain 508465 chr1 249250621 + 108746063 108752520 L1PA7 6471 - 16 6468 6286 132 16 4 5 0 1 132 1 0 4 0 1 162 0 6 8 0 12 27 2 0 340 1 0 827 7 10 114 1 5 62 1 0 342 5 4 414 14 7 56 2 1 172 0 1 53 0 4 303 2 3 109 5 9 489 13 0 127 4 6 495 0 1 141 1 2 92 0 5 480 33 16 674 29 31 58 16 17 74 5 6 69 0 1 338 chain 7602 chr1 249250621 + 108794628 108794745 L1P4 1494 - 1270 1385 173528 9 0 1 5 1 0 64 1 0 20 6 5 11 chain 168793 chr1 249250621 + 108805312 108807655 L1PA10 4194 + 255 2575 22185 12 7 5 14 30 23 4 1 0 22 2 0 19 1 0 9 5 4 7 1 0 6 1 0 15 10 0 8 1 0 43 10 9 4 0 1 12 20 18 173 0 1 781 15 25 67 1 0 75 1 0 155 4 1 343 0 1 93 1 0 370 chain 89585 chr1 249250621 + 108807663 108808669 L1PA3long 6157 + 5146 6153 39786 277 4 5 725 chain 5256 chr1 249250621 + 108824886 108824982 L1MEf 1413 - 399 493 192444 48 12 13 12 3 0 21 chain 96731 chr1 249250621 + 108829123 108830343 L1PA7 6471 - 9 1259 37584 97 26 8 356 0 33 155 0 2 187 0 3 336 0 10 63 chain 152693 chr1 249250621 + 108830343 108832159 L1PA7 6471 + 3397 5215 24268 125 0 1 1051 1 0 4 0 1 599 4 5 32 chain 26183 chr1 249250621 + 108836858 108837158 AluYk4 311 - 3 303 99269 300 chain 123212 chr1 249250621 + 108839703 108841273 THE1A-int 1579 - 5 1578 29974 78 9 11 1029 1 2 282 27 27 144 chain 53659 chr1 249250621 + 108849577 108850588 L1M1 2793 - 1147 2132 56578 113 0 5 161 6 12 13 1 0 17 0 2 25 1 0 6 31 17 13 1 0 54 0 4 25 1 0 157 1 4 15 1 0 21 7 9 49 89 85 9 3 1 27 1 0 30 24 19 8 2 0 5 2 0 7 44 31 41 chain 5220 chr1 249250621 + 108879505 108879656 MER3 215 + 12 169 192825 42 76 82 33 chain 355218 chr1 249250621 + 108890535 108895904 L1PA8 5853 - 0 4542 11468 93 1 0 19 2 1 31 29 27 74 2 0 46 1 0 432 325 0 46 0 2 63 0 1 8 2 0 127 39 11 108 6 8 179 0 1 128 1 9 75 1 0 458 0 2 239 482 0 21 0 2 49 11 3 74 0 1 127 0 1 135 16 17 37 0 4 66 14 6 158 0 3 20 4 8 305 1 4 639 9 6 72 5 7 589 chain 40904 chr1 249250621 + 108893101 108893551 L1PA3long 6157 - 0 453 68026 282 0 3 168 chain 48602 chr1 249250621 + 108895904 108896591 L1PB1 5432 - 778 1467 60035 20 9 7 114 5 9 284 1 2 39 1 0 4 0 1 149 2 0 36 5 6 18 chain 34134 chr1 249250621 + 108896591 108897093 L1PB1 5432 + 4591 5103 77253 14 0 4 20 0 3 46 27 31 318 15 14 62 chain 533613 chr1 249250621 + 108900942 108907039 L1PA5 6144 - 8 6141 3751 132 2 0 6 18 21 92 1 0 598 2 1 445 5 1 212 1 0 1473 0 2 74 0 2 759 0 1 1470 0 37 807 chain 61787 chr1 249250621 + 108908556 108909288 LTR17 781 - 6 760 52004 25 0 22 401 1 0 40 0 1 265 chain 53838 chr1 249250621 + 108929034 108930045 L1M1 2793 + 661 1646 56460 41 92 70 30 1 0 27 3 1 9 89 85 49 7 9 21 1 0 15 1 4 160 1 0 22 0 4 54 1 0 13 31 17 6 1 0 25 0 2 17 4 9 177 0 5 113 chain 124901 chr1 249250621 + 108938349 108939919 THE1A-int 1579 + 1 1574 29424 451 0 1 886 12 12 134 9 11 78 chain 152693 chr1 249250621 + 108947463 108949279 L1PA7 6471 - 1256 3074 24269 32 4 5 599 0 1 4 1 0 1052 0 1 124 chain 96731 chr1 249250621 + 108949279 108950499 L1PA7 6471 + 5212 6462 37583 63 0 10 336 0 3 187 0 2 157 0 33 354 26 8 97 chain 29399 chr1 249250621 + 108957928 108958235 AluYa5 310 - 3 310 87082 307 chain 24955 chr1 249250621 + 108966602 108966895 AluSp 311 - 18 311 105030 293 chain 89454 chr1 249250621 + 108970953 108971959 L1PA3long 6157 - 4 1011 39821 725 4 5 277 chain 155257 chr1 249250621 + 108971967 108974410 L1PA10 4194 - 1619 4019 23953 370 1 0 93 0 1 351 4 0 148 1 0 75 1 0 67 15 25 781 0 1 52 352 325 14 7 5 12 62 48 7 3 0 13 2 0 12 chain 6392 chr1 249250621 + 108984869 108984965 L1P4 1494 + 109 203 182085 11 6 5 20 1 0 58 chain 9806 chr1 249250621 + 109015911 109016016 LTR7 482 + 377 482 161566 105 chain 284444 chr1 249250621 + 109016018 109019599 HERVH-int 3825 + 0 3825 14390 212 0 11 110 2 1 196 1 0 11 1 0 4 0 1 24 2 1 9 1 0 9 4 0 14 51 1 15 0 37 42 2 1 80 0 3 1 4 0 291 0 2 5 2 0 604 6 33 297 0 10 46 3 5 61 0 3 501 0 1 428 9 11 39 8 218 265 1 2 220 chain 152089 chr1 249250621 + 109029100 109030939 L1P1 4361 + 2 1835 24327 572 1 0 128 12 5 962 0 2 164 chain 162145 chr1 249250621 + 109030971 109033430 SVA_F 1814 - 0 1804 23041 10 0 6 278 0 2 331 1 0 10 1 0 139 51 0 76 0 15 59 0 1 32 1 0 18 625 0 827 chain 23159 chr1 249250621 + 109031978 109032486 SVA_F 1814 - 737 958 87244 115 302 14 60 0 1 31 chain 2072 chr1 249250621 + 109032093 109032134 SVA_F 1814 - 1355 1398 131655 22 3 5 16 chain 9337 chr1 249250621 + 109032134 109032264 SVA_F 1814 - 766 848 133590 56 48 0 26 chain 11456 chr1 249250621 + 109032269 109032395 SVA_F 1814 - 676 802 139470 126 chain 4024 chr1 249250621 + 109032506 109032548 SVA_F 1814 - 879 921 207032 42 chain 393309 chr1 249250621 + 109033492 109037812 L1PA3long 6157 + 1836 6157 10345 54 0 2 1492 1 0 2600 0 2 88 2 0 83 chain 5846 chr1 249250621 + 109038454 109038542 L1PA10 4194 + 4079 4161 186723 27 3 1 9 3 0 34 1 0 11 chain 25172 chr1 249250621 + 109044436 109044795 L1PA8 5853 + 5501 5853 103898 61 1 0 46 2 0 70 2 1 14 9 8 39 2 1 19 2 1 92 chain 452154 chr1 249250621 + 109056414 109063096 L1PA8 5853 - 3 5745 8690 90 1 0 19 2 1 61 2 1 70 2 0 44 1 0 30 0 12 304 0 1 207 2 0 160 0 1 141 0 1 213 0 22 174 26 0 236 0 8 405 8 9 134 10 1 21 0 1 146 1 0 63 0 3 50 1 0 257 8 26 757 974 0 101 2 1 170 7 9 159 8 6 185 0 1 26 1 0 262 0 2 246 0 1 703 4 8 152 0 5 36 chain 79315 chr1 249250621 + 109060066 109061034 LTR5_Hs 974 + 0 974 43900 216 1 0 72 0 1 448 0 1 79 17 24 30 2 0 103 chain 118082 chr1 249250621 + 109078099 109079462 SVA_D 2077 - 0 2077 31779 672 0 489 115 0 40 11 0 40 60 0 40 43 0 76 445 0 14 8 0 15 9 chain 82336 chr1 249250621 + 109082584 109083631 MER11C 1089 + 0 1063 42613 246 0 9 58 0 4 69 1 0 205 6 4 76 0 1 18 0 4 5 1 0 38 0 1 127 0 1 197 chain 492379 chr1 249250621 + 109084965 109090646 L1PA6 6164 + 483 6160 7250 449 1 0 321 1 0 743 0 1 328 0 1 74 0 1 128 0 1 659 0 1 26 2 1 2930 1 0 5 5 0 8 chain 215895 chr1 249250621 + 109118928 109121262 L1PA2 6032 - 11 2344 18114 1122 1 0 1211 chain 93700 chr1 249250621 + 109121262 109122282 L1HS 6032 + 1565 2585 38356 1020 chain 6404 chr1 249250621 + 109131356 109131430 L1MA9 1812 - 481 555 181993 74 chain 7486 chr1 249250621 + 109166140 109166273 L1MA3 4352 + 4204 4332 174231 16 1 0 7 1 3 30 2 0 22 2 1 5 1 0 26 1 0 14 1 0 4 chain 23274 chr1 249250621 + 109172915 109173207 L1PA4 6152 + 5859 6151 114324 134 11 12 8 1 0 138 chain 121338 chr1 249250621 + 109182514 109184048 LTR12C 1709 - 0 1709 30583 481 24 33 71 29 186 101 1 0 124 0 2 397 1 0 4 0 1 18 0 9 174 5 4 104 chain 32473 chr1 249250621 + 109184050 109184993 L1MA3 4352 + 3752 4349 80072 91 4 0 209 1 0 40 81 74 14 1 0 13 0 11 2 305 0 41 48 12 23 1 0 5 2 1 29 14 13 19 chain 6586 chr1 249250621 + 109207563 109207644 MLT1B 390 + 285 366 180569 81 chain 7650 chr1 249250621 + 109209414 109209510 MSTB1 431 + 335 431 173230 96 chain 121111 chr1 249250621 + 109209915 109211333 LTR12C 1709 + 0 1698 30665 240 0 1 420 1 280 171 1 0 8 2 0 104 0 4 393 5 4 73 chain 10069 chr1 249250621 + 109212453 109212620 Tigger4b 360 + 0 183 160226 22 1 0 18 23 40 103 chain 146273 chr1 249250621 + 109217720 109219319 SVA_F 1814 + 0 1792 25120 501 0 40 82 0 40 225 1 0 10 0 64 165 0 50 615 chain 8040 chr1 249250621 + 109219343 109219434 LTR2B 499 + 366 457 170817 91 chain 38629 chr1 249250621 + 109224318 109224805 LTR10D 510 + 0 510 71254 49 0 24 6 5 0 146 14 15 22 0 3 245 chain 24146 chr1 249250621 + 109257227 109257514 AluYc3 301 - 9 301 109493 31 0 4 142 1 2 113 chain 12370 chr1 249250621 + 109278151 109278329 MER33 330 - 52 240 150753 38 0 4 14 1 2 75 0 1 9 2 0 5 0 4 9 0 2 25 chain 3485 chr1 249250621 + 109279510 109279553 MIR 256 - 31 74 215586 43 chain 2998 chr1 249250621 + 109328561 109328594 THE1C-int 1605 - 1395 1428 225083 33 chain 15860 chr1 249250621 + 109329964 109330156 MER107 203 + 0 203 138779 51 0 6 99 0 5 42 chain 12871 chr1 249250621 + 109331875 109332054 MER30 238 + 37 238 148747 70 4 0 10 3 23 12 0 6 80 chain 9730 chr1 249250621 + 109410672 109410797 MER85 139 + 4 139 161940 85 0 10 40 chain 48537 chr1 249250621 + 109431698 109432288 LTR10C 591 - 0 591 60080 81 0 2 435 7 6 67 chain 7087 chr1 249250621 + 109471679 109471787 MER58B 340 - 9 118 176848 89 8 9 11 chain 24926 chr1 249250621 + 109488649 109488946 AluY 311 + 0 297 105181 47 2 1 84 0 1 164 chain 18756 chr1 249250621 + 109508370 109509031 MER4D1 891 + 9 879 130812 76 399 609 41 0 1 16 2 0 127 chain 56275 chr1 249250621 + 109509891 109510637 MER4E 760 - 0 760 54977 92 0 2 212 0 4 79 0 2 107 0 1 85 18 25 115 14 12 24 chain 23765 chr1 249250621 + 109515281 109515586 AluY 311 + 0 301 111677 87 8 2 43 0 1 72 1 2 94 chain 13096 chr1 249250621 + 109586336 109586661 L1MA4 2864 + 2518 2804 147860 123 33 30 17 97 63 16 2 0 37 chain 135199 chr1 249250621 + 109595299 109596821 SVA_B 1603 + 49 1603 26975 11 1 0 407 0 2 451 4 0 48 0 36 439 1 0 160 chain 18169 chr1 249250621 + 109597120 109597365 AluSq4 311 + 1 292 132412 126 14 60 105 chain 29568 chr1 249250621 + 109597730 109598040 AluYf4 310 - 0 310 86348 310 chain 9698 chr1 249250621 + 109599385 109599536 MER1A 529 + 385 529 162092 73 22 15 56 chain 82153 chr1 249250621 + 109616013 109617054 SVA_B 1603 + 0 1443 42704 21 14 23 22 0 5 55 3 35 82 0 1 198 0 116 58 1 0 133 4 1 9 5 45 19 0 3 7 3 203 407 chain 13858 chr1 249250621 + 109617055 109617217 SVA_B 1603 + 1443 1603 145038 154 2 0 6 chain 24428 chr1 249250621 + 109631025 109631330 AluSp 311 - 13 311 107927 8 10 0 23 0 3 264 chain 5556 chr1 249250621 + 109673404 109673472 MLT1F2 592 - 4 72 189518 68 chain 25554 chr1 249250621 + 109680141 109680449 AluSp 311 - 4 311 101957 130 5 4 173 chain 91430 chr1 249250621 + 109719228 109720253 SVA_D 2077 - 0 1716 39154 639 0 535 154 0 40 99 0 116 133 chain 15438 chr1 249250621 + 109828358 109828554 MER4D1 891 + 0 196 140084 196 chain 41195 chr1 249250621 + 109829221 109829755 MER41A 554 - 0 554 67650 81 0 5 40 0 1 26 0 1 165 0 11 105 4 0 22 5 10 36 0 1 50 chain 10349 chr1 249250621 + 109830339 109830537 L1PB1 5432 - 11 191 158908 16 2 1 12 1 0 12 0 1 9 1 0 24 2 0 14 1 0 5 2 0 19 22 12 16 1 0 39 chain 3279 chr1 249250621 + 109833409 109833447 MIRb 242 + 22 61 219373 20 0 1 18 chain 25546 chr1 249250621 + 109889088 109889386 AluY 311 + 3 302 102011 129 0 1 169 chain 3661 chr1 249250621 + 109902059 109902100 MLT1A0-int 1658 - 23 64 212573 41 chain 23872 chr1 249250621 + 109917909 109918179 AluYf5 307 + 7 296 111074 79 0 19 191 chain 16999 chr1 249250621 + 109921826 109922049 MER30 238 - 2 237 135600 111 6 18 106 chain 4474 chr1 249250621 + 109992542 109992615 L1MC1 2226 + 1074 1145 201075 21 8 6 44 chain 15609 chr1 249250621 + 110096353 110096689 L1PB1 5432 - 10 318 139552 15 4 3 12 1 0 7 0 3 12 1 0 24 2 0 14 1 0 10 2 0 25 13 1 14 2 1 38 11 10 12 2 1 52 2 0 9 8 4 9 1 0 8 1 0 24 chain 17550 chr1 249250621 + 110097473 110097871 L1PB 1623 + 1217 1572 134124 11 1 4 48 0 2 14 26 13 137 1 0 7 2 1 15 1 0 15 1 0 4 96 65 19 chain 12579 chr1 249250621 + 110123198 110123415 Tigger3a 397 - 99 334 149923 131 10 0 10 44 72 22 chain 6904 chr1 249250621 + 110134155 110134248 U6 107 - 0 93 178150 43 0 1 4 4 3 42 chain 11251 chr1 249250621 + 110141891 110142128 L1MB3 1562 - 20 227 155220 19 1 0 55 2 0 30 63 35 50 1 2 16 chain 23009 chr1 249250621 + 110180362 110180639 AluSp 311 - 24 302 115580 173 3 4 101 chain 3187 chr1 249250621 + 110192167 110192231 MER51A 677 + 176 230 221190 16 17 7 31 chain 49256 chr1 249250621 + 110212261 110212979 LTR12_ 688 - 0 688 59545 376 18 17 17 55 47 24 24 3 204 chain 15348 chr1 249250621 + 110226268 110226783 LTR10C 591 + 0 514 60300 34 2 0 476 0 1 3 chain 79729 chr1 249250621 + 110226791 110227809 MER11A 1151 + 0 1146 43719 85 0 91 24 1 0 94 4 0 244 0 1 60 8 4 61 0 10 142 0 1 4 5 38 61 0 1 225 chain 2295 chr1 249250621 + 110227809 110227886 LTR10C 591 + 514 591 60300 77 chain 53122 chr1 249250621 + 110228929 110229587 PABL_A 660 + 0 658 56944 89 2 1 26 0 1 219 1 0 86 0 1 235 chain 43798 chr1 249250621 + 110244713 110245236 LTR10C 591 + 0 523 64453 34 2 0 476 0 1 4 0 1 7 chain 79744 chr1 249250621 + 110245236 110246267 MER11A 1151 + 0 1151 43710 85 0 91 23 1 0 95 4 0 244 0 1 46 19 15 84 5 6 117 0 1 11 6 40 61 0 1 230 chain 89481 chr1 249250621 + 110249350 110250709 HERVK11-int 2540 + 911 2189 39812 57 25 17 16 23 8 24 9 8 24 2 0 65 2 1 22 28 27 7 3 0 28 13 3 10 1 0 25 13 2 35 21 1 440 5 0 104 1 0 189 1 0 78 10 9 78 chain 77031 chr1 249250621 + 110251242 110252265 MER11A 1151 + 0 1151 44952 85 0 91 24 1 0 94 4 0 241 11 12 137 5 6 129 6 40 29 1 2 5 1 0 25 0 1 190 0 4 31 0 1 4 chain 6288 chr1 249250621 + 110252265 110252338 LTR10C 591 + 518 591 182900 73 chain 52672 chr1 249250621 + 110253371 110254027 PABL_A 660 + 0 658 57202 89 2 1 26 0 1 219 1 0 86 0 1 88 0 2 145 chain 23879 chr1 249250621 + 110267825 110268138 MER4-int 2692 - 723 1064 111034 77 0 2 79 9 33 11 0 1 13 0 1 124 chain 34806 chr1 249250621 + 110268138 110268554 LTR3 431 + 0 416 76462 250 0 1 96 1 0 69 chain 5699 chr1 249250621 + 110269795 110269859 HERVH-int 3825 - 3761 3825 188128 64 chain 550281 chr1 249250621 + 110285402 110291562 L1PA4 6152 - 1 6146 1407 589 0 1 69 1 3 2279 2 1 730 0 1 1637 17 0 265 1 0 570 chain 3639 chr1 249250621 + 110322105 110322147 MLT1A0 366 - 323 365 212998 42 chain 91812 chr1 249250621 + 110375545 110378033 HUERS-P1-int 2401 + 234 2139 39024 9 4 0 34 4 0 14 3 1 7 1 0 14 61 33 13 24 0 13 1 0 6 9 7 43 3 0 7 1 0 38 1 0 8 2 0 16 41 37 14 10 1 16 10 7 23 2 1 86 38 38 66 1 2 39 11 3 44 0 2 143 1 0 6 2 0 37 294 13 19 0 1 27 4 2 8 1 0 25 10 7 75 2 0 29 16 12 100 2 0 10 1 0 14 1 0 41 2 0 8 8 6 5 0 1 65 21 22 26 3 4 51 1 2 13 20 14 28 40 27 7 13 0 13 2 0 13 8 7 17 8 0 18 61 31 13 1 0 7 2 0 7 7 0 18 39 21 9 16 0 17 27 0 10 1 0 12 2 1 36 1 0 15 36 13 8 2 0 3 1 0 25 30 19 4 1 0 9 1 0 7 1 0 47 2 0 15 chain 28436 chr1 249250621 + 110379508 110379932 LTR7B 505 - 8 505 91437 43 14 13 79 1 0 60 2 90 17 34 11 69 0 10 105 chain 238119 chr1 249250621 + 110384411 110387001 L1PA3long 6157 + 3564 6156 16875 2585 0 2 5 chain 3112 chr1 249250621 + 110389045 110389118 MER84 505 + 0 74 222697 20 20 22 8 1 0 24 chain 422379 chr1 249250621 + 110393689 110404758 L1PA6 6164 + 0 6162 9478 64 0 1 397 1 0 91 0 1 376 9 1 219 5919 5 92 0 5 682 0 8 212 1 2 55 1 3 111 1 0 78 0 1 212 0 1 14 0 5 445 0 4 90 2 0 10 4 5 155 1 968 999 0 4 97 0 13 128 0 2 291 0 1 143 1 2 4 1 0 154 0 2 9 chain 58491 chr1 249250621 + 110394854 110395599 LTR17 781 - 0 781 53705 31 0 22 400 5 4 111 0 13 43 0 1 90 0 1 65 chain 328093 chr1 249250621 + 110395909 110399809 HERV17-int 4347 - 0 4334 12273 303 0 1 43 7 5 213 0 1 36 0 3 295 11 10 296 1 0 328 0 3 398 0 1 796 0 1 74 1 0 4 5 6 25 0 3 30 1 2 123 1 0 582 0 430 25 1 0 41 6 7 123 1 0 26 2 0 34 1 0 52 1 0 14 chain 26074 chr1 249250621 + 110400450 110400764 LTR17 781 - 470 781 99732 162 3 0 149 chain 6765 chr1 249250621 + 110405935 110406022 LTR56 451 - 136 223 179205 74 0 1 4 1 0 8 chain 2993 chr1 249250621 + 110441332 110441364 MER58D 378 + 331 363 225193 32 chain 36539 chr1 249250621 + 110483217 110483714 MER1A 529 + 30 529 74184 50 17 17 191 0 1 168 11 12 60 chain 6970 chr1 249250621 + 110504841 110504924 MSTC 436 - 339 422 177683 83 chain 15023 chr1 249250621 + 110511914 110512111 L1MB3 1562 + 989 1185 141260 55 1 0 141 chain 24114 chr1 249250621 + 110589393 110589679 AluY 311 + 2 292 109669 121 1 3 148 0 2 16 chain 5509 chr1 249250621 + 110621821 110621884 MIR 256 - 112 175 189947 63 chain 5026 chr1 249250621 + 110635512 110635574 MIR 256 - 104 166 194863 62 chain 4602 chr1 249250621 + 110663115 110663276 HAL1-2a_MD 234 + 10 225 199600 14 0 60 15 17 7 19 0 49 18 28 1 6 3 0 8 15 0 18 chain 27458 chr1 249250621 + 110729782 110730197 MER57B1 401 - 24 401 94794 12 0 2 26 43 1 246 8 10 80 chain 26517 chr1 249250621 + 110800055 110800364 AluY 311 + 0 304 97982 126 5 0 178 chain 21210 chr1 249250621 + 110803306 110803558 AluY 311 + 36 289 123176 96 0 1 156 chain 25702 chr1 249250621 + 110811347 110811637 AluYc3 301 - 10 301 101282 176 1 2 113 chain 21857 chr1 249250621 + 110818319 110818594 AluSc8 310 + 21 302 120794 111 0 3 127 6 9 31 chain 38938 chr1 249250621 + 110871242 110871777 MER4A1_ 611 - 11 611 70819 28 0 1 28 6 4 227 0 64 26 6 7 92 1 2 91 0 1 4 1 0 25 chain 11564 chr1 249250621 + 110872373 110872524 Tigger4b 360 + 201 354 154050 95 3 1 6 0 4 47 chain 9057 chr1 249250621 + 110874453 110874579 BC200 147 - 10 131 165273 6 3 0 38 3 1 76 chain 107580 chr1 249250621 + 110938040 110939524 LTR12C 1709 - 0 1709 34831 82 1 0 86 0 102 147 4 0 64 11 4 17 24 0 51 0 47 123 17 17 112 0 118 170 0 2 94 19 15 171 14 10 277 chain 33946 chr1 249250621 + 110955778 110956252 LTR15 485 + 0 475 77698 50 0 1 5 5 3 65 4 0 25 0 2 128 1 5 9 1 7 139 7 0 17 0 1 18 chain 22850 chr1 249250621 + 110960400 110960684 AluSp 311 - 17 301 116342 152 13 10 11 0 3 108 chain 30996 chr1 249250621 + 110961075 110961514 MER65A 464 - 0 462 82523 73 0 1 23 6 10 35 1 0 177 1 3 82 10 27 31 chain 10548 chr1 249250621 + 110966597 110966846 L1MB3 1562 + 1278 1500 158050 73 1 0 26 92 67 24 2 1 31 chain 31309 chr1 249250621 + 110980549 110980982 LTR7 482 + 0 468 81972 101 15 14 109 0 1 20 19 51 11 0 1 74 0 2 84 chain 29569 chr1 249250621 + 111000689 111000999 AluYa5 310 - 0 310 86332 310 chain 12943 chr1 249250621 + 111019277 111019495 MER50 708 - 487 708 148455 117 0 1 29 53 55 19 chain 7403 chr1 249250621 + 111052512 111052628 Tigger4 2445 + 183 299 174751 35 6 4 14 2 1 26 0 3 33 chain 4138 chr1 249250621 + 111052696 111052747 Tigger4a 237 + 184 235 205392 51 chain 34418 chr1 249250621 + 111106717 111107167 MER4A1 472 - 0 472 77034 70 4 6 150 0 21 114 0 1 4 1 0 60 1 0 46 chain 32147 chr1 249250621 + 111202298 111202717 L1PA6 6164 + 5745 6161 80613 18 1 2 221 1 10 27 8 0 130 5 0 8 chain 3551 chr1 249250621 + 111212667 111212710 MIR 256 - 120 163 214525 43 chain 85639 chr1 249250621 + 111220533 111221539 L1PA7 6471 - 614 1635 41293 155 0 2 76 0 3 193 0 8 184 0 6 95 5 0 120 0 1 178 chain 51096 chr1 249250621 + 111221546 111222135 L1PA7 6471 + 5868 6461 58256 546 0 4 43 chain 122473 chr1 249250621 + 111246497 111248061 THE1B-int 1605 - 5 1605 30231 67 0 1 818 2 3 42 0 8 197 7 32 267 0 1 105 9 9 50 chain 19626 chr1 249250621 + 111248126 111248473 THE1B 368 - 28 368 128320 47 1 0 100 31 24 28 37 39 54 0 1 34 2 0 13 chain 18771 chr1 249250621 + 111284266 111284473 L1PA5 6144 - 0 207 130769 207 chain 24282 chr1 249250621 + 111295275 111295564 L1PA5 6144 - 15 304 108759 289 chain 21026 chr1 249250621 + 111296135 111296394 AluSc 308 - 43 307 123830 35 0 4 117 1 2 106 chain 7840 chr1 249250621 + 111307032 111307128 HY3 101 - 2 101 172075 76 0 3 20 chain 43575 chr1 249250621 + 111346810 111347612 L1PA15 4387 - 31 811 64712 16 12 10 15 3 1 44 29 26 27 2 1 9 4 0 7 48 40 30 1 0 26 1 0 172 1 0 18 2 1 28 15 13 41 28 22 123 4 14 96 chain 66729 chr1 249250621 + 111349785 111350515 L1PA3long 6157 - 1203 1934 49765 633 0 1 97 chain 108322 chr1 249250621 + 111350515 111351713 L1PA3long 6157 + 4958 6157 34609 155 0 1 1043 chain 96053 chr1 249250621 + 111363615 111364670 L1PA3long 6157 - 0 1055 37804 1055 chain 10811 chr1 249250621 + 111375109 111375265 Tigger3c 601 + 354 509 156938 95 3 4 12 2 0 44 chain 112175 chr1 249250621 + 111376280 111377566 L1PA5 6144 - 4 1288 33618 11 3 0 751 0 1 521 chain 86262 chr1 249250621 + 111377566 111378547 L1P1 4361 + 2831 3812 41020 981 chain 14506 chr1 249250621 + 111380475 111380902 L1MA8 2339 - 13 407 142873 23 58 41 5 1 0 25 2 0 34 51 42 33 23 6 17 24 22 11 0 16 42 1 0 46 0 3 6 3 0 22 chain 62664 chr1 249250621 + 111388272 111388954 L1PA3long 6157 - 0 682 51603 682 chain 12451 chr1 249250621 + 111388954 111389090 L1PA3long 6157 + 5343 5479 150458 136 chain 24332 chr1 249250621 + 111403123 111403404 L1PA5 6144 - 4 286 108471 138 0 1 143 chain 65018 chr1 249250621 + 111405363 111406509 L1PA14 3548 - 92 1226 50568 42 1 0 2 7 0 13 1 0 6 1 0 15 4 2 30 87 82 42 2 1 52 17 18 14 1 0 6 2 0 13 5 3 5 2 0 104 12 8 45 2 0 11 7 4 225 19 12 13 1 0 23 21 34 34 6 19 42 1 0 42 0 4 168 chain 4341 chr1 249250621 + 111419852 111419916 L1MC4 1079 - 322 384 202702 44 4 2 16 chain 31118 chr1 249250621 + 111461771 111462207 MLT2A1 477 + 0 477 82308 142 0 1 26 0 4 122 6 0 6 1 12 11 1 0 61 17 49 43 chain 3513 chr1 249250621 + 111469833 111470406 MLT2F 649 - 13 614 215169 25 439 468 31 57 56 21 chain 140820 chr1 249250621 + 111473613 111475248 L1PA6 6164 - 2 1642 26021 9 0 2 952 0 2 291 0 1 383 chain 73119 chr1 249250621 + 111512262 111513361 L1PA13 3608 + 2399 3488 46970 21 9 10 46 2 0 141 0 3 250 30 30 232 12 11 17 7 6 107 2 0 62 6 5 41 6 5 10 2 0 39 17 13 40 chain 40103 chr1 249250621 + 111525934 111526397 L1PA5 6144 - 6 469 69175 141 0 1 189 1 0 132 chain 78960 chr1 249250621 + 111534080 111535115 L1PB1 5432 - 524 1622 44078 67 40 39 176 3 0 80 1 0 114 0 1 175 5 71 144 15 16 215 chain 37335 chr1 249250621 + 111545807 111546330 L1PA8 5853 + 5333 5853 73046 125 12 16 90 1 0 9 1 2 31 8 6 70 1 0 9 1 0 5 1 0 44 2 1 19 2 1 92 chain 435698 chr1 249250621 + 111550746 111557065 L1PA8A 6298 + 565 6288 9176 243 3 0 134 0 3 99 0 1 55 0 4 264 8 6 214 17 14 32 14 9 13 0 1 132 1 2 540 0 9 170 24 3 6 0 1 247 0 1 189 0 1 78 242 2 337 15 17 19 1 5 50 0 1 42 1 0 38 0 2 5 2 0 80 1 2 69 10 1 160 3 0 5 0 1 560 10 11 240 0 4 95 10 2 35 1 0 90 5 6 151 2 1 28 9 0 36 0 7 135 0 1 104 0 15 96 3 2 78 1 3 131 0 28 431 376 0 22 1 0 4 2 0 100 chain 19677 chr1 249250621 + 111553235 111553464 AluY 311 + 81 311 128175 51 0 1 178 chain 8369 chr1 249250621 + 111556594 111556689 L1PA8A 6298 + 6196 6291 169029 95 chain 9431 chr1 249250621 + 111556730 111556860 L1PA8A 6298 + 5956 6087 163404 42 4 3 6 0 1 74 0 1 4 chain 24665 chr1 249250621 + 111566106 111566402 AluY 311 + 11 307 106637 296 chain 20133 chr1 249250621 + 111570152 111570443 THE1B 368 + 7 298 126737 8 2 0 22 0 5 130 11 9 12 2 0 5 0 2 94 1 0 4 chain 90854 chr1 249250621 + 111578063 111579315 L1PA11 4918 + 3254 4506 39338 65 0 2 340 37 36 428 3 2 91 1 4 106 1 0 65 20 17 25 2 6 33 2 0 13 2 1 18 chain 6875 chr1 249250621 + 111580644 111580838 L1MA3 4352 + 4171 4352 178392 9 1 0 18 3 5 7 4 0 49 2 0 20 60 52 21 chain 91991 chr1 249250621 + 111589936 111591030 L1PA7 6471 - 1 1099 38972 760 0 1 85 0 3 249 chain 145030 chr1 249250621 + 111600235 111601824 L1PA3long 6157 - 0 1590 25322 98 0 1 1491 chain 88185 chr1 249250621 + 111601824 111602801 L1PA3long 6157 + 3572 4553 40304 664 0 1 120 0 4 22 6 5 165 chain 25826 chr1 249250621 + 111611193 111611467 AluYa5 310 + 34 308 100765 274 chain 6496 chr1 249250621 + 111611467 111611548 L1PB4 2604 - 140 221 181286 81 chain 537961 chr1 249250621 + 111616153 111622270 L1PA5 6144 - 3 6144 3157 143 3 4 216 2 0 483 0 4 804 1 0 62 1 0 143 0 2 610 0 2 389 0 2 30 0 4 73 1 0 750 0 3 574 0 3 683 0 3 552 0 5 597 chain 6691 chr1 249250621 + 111631799 111631910 L1M1 2793 - 98 210 179746 10 1 0 12 1 0 41 11 14 35 chain 334618 chr1 249250621 + 111634686 111638609 L1PA6 6164 + 2250 6162 12035 75 2 0 669 13 0 228 0 1 148 0 1 277 0 1 361 0 3 635 1 0 188 0 1 701 0 1 529 1 2 83 4 0 8 chain 243389 chr1 249250621 + 111642236 111645551 L1PBa1 4058 - 640 4047 16595 479 3 54 72 0 1 133 1 2 18 0 6 13 0 1 177 8 0 65 3 0 369 0 14 352 5 8 13 0 4 41 5 4 35 0 4 14 1 5 76 6 4 17 0 19 35 0 2 113 10 16 180 0 1 15 0 2 263 8 12 148 12 11 47 0 5 42 8 7 77 28 16 111 37 40 4 1 0 5 0 3 206 35 22 24 chain 27667 chr1 249250621 + 111679593 111679896 AluYf4 310 + 0 303 94161 303 chain 54260 chr1 249250621 + 111693608 111694651 MER4E1 777 - 8 777 56194 111 324 11 93 8 14 38 3 14 51 0 1 84 0 19 313 5 7 13 chain 11121 chr1 249250621 + 111699098 111699251 MER30 238 - 0 187 155729 70 0 8 21 4 30 58 chain 28782 chr1 249250621 + 111701524 111701835 AluYa5 310 - 0 309 89972 217 2 0 92 chain 9404 chr1 249250621 + 111719645 111719854 Tigger4 2445 - 2118 2302 163541 89 20 7 9 2 0 27 26 19 8 1 0 6 1 0 13 1 0 6 chain 25606 chr1 249250621 + 111732511 111732805 AluY 311 + 7 302 101697 116 3 4 175 chain 60993 chr1 249250621 + 111776178 111776828 SVA_D 2077 + 1428 2077 52335 10 1 0 639 chain 26178 chr1 249250621 + 111802294 111802596 L1PA6 6164 + 5867 6162 99284 289 7 0 6 chain 7584 chr1 249250621 + 111824739 111824823 L1PA6 6164 + 6068 6152 173640 84 chain 4761 chr1 249250621 + 111832821 111832876 LTR66 600 - 215 270 197795 55 chain 46610 chr1 249250621 + 111833181 111833782 LTR66 600 + 0 600 61525 166 0 1 8 6 5 127 0 2 104 2 0 61 6 5 121 chain 36861 chr1 249250621 + 111833785 111834298 L1PA8 5853 + 5346 5853 73717 189 0 1 28 1 0 44 3 1 25 1 0 36 21 19 18 0 1 36 2 1 15 1 0 93 chain 516216 chr1 249250621 + 111838153 111844685 L1PA6 6164 + 3 6162 5556 61 63 1 678 0 12 177 0 1 1214 0 1 184 18 0 650 0 7 195 5 6 1006 0 8 917 0 1 150 0 1 172 0 1 387 318 0 36 6 0 284 2 0 9 chain 550147 chr1 249250621 + 111877837 111883990 L1PA3long 6157 + 4 6157 1431 341 0 1 417 0 1 425 0 3 248 0 1 942 0 2 792 1 0 97 7 1 2154 0 1 68 1 0 511 1 0 148 chain 79323 chr1 249250621 + 111902345 111903299 LTR5_Hs 974 - 3 962 43897 188 7 7 119 0 1 194 0 4 446 chain 41720 chr1 249250621 + 111905040 111905534 L1PA6 6164 - 114 609 66999 34 8 9 452 chain 3426 chr1 249250621 + 111917614 111917652 L1MA3 4352 + 3321 3359 216640 38 chain 521140 chr1 249250621 + 111936387 111942517 L1PA6 6164 + 0 6161 5041 460 4 5 53 0 2 47 1 0 220 0 17 389 0 2 311 0 6 646 1 0 100 0 2 65 0 1 130 0 1 732 0 1 512 0 1 922 0 1 23 3 2 50 3 1 1090 1 2 367 chain 67772 chr1 249250621 + 111951875 111952945 L1PA14 3548 + 2415 3456 49336 33 13 12 75 6 5 90 0 3 38 13 0 17 5 4 246 3 1 14 2 0 37 14 15 35 0 1 67 52 49 9 1 0 55 1 0 93 0 1 16 1 0 11 5 1 36 4 2 10 2 1 6 1 0 16 1 0 42 chain 4439 chr1 249250621 + 111973984 111974039 MER47A 366 - 7 62 201467 55 chain 15150 chr1 249250621 + 111974047 111974265 L1PA8 5853 + 5639 5853 140916 36 5 4 11 1 0 50 2 1 19 2 1 92 chain 8845 chr1 249250621 + 111989419 111989526 HY1 111 + 0 109 166399 39 0 2 68 chain 4320 chr1 249250621 + 112022843 112022934 MIR 256 - 141 233 202968 47 2 0 7 22 25 13 chain 48651 chr1 249250621 + 112036833 112037898 L1PREC2 3366 + 2217 3242 59992 49 0 3 213 0 1 69 5 38 103 0 33 26 2 0 42 15 13 43 1 0 3 3 0 14 52 39 15 3 0 4 0 1 9 0 1 16 3 0 11 22 8 35 6 4 22 0 1 13 211 150 19 10 5 6 4 0 16 chain 27669 chr1 249250621 + 112068827 112069205 THE1C 375 + 0 375 94151 118 0 1 60 22 19 151 1 0 26 chain 65902 chr1 249250621 + 112071998 112072713 SVA_D 2077 - 7 946 50138 511 0 224 204 chain 5363 chr1 249250621 + 112083578 112083781 MER58A 224 - 4 175 191408 48 121 89 34 chain 26896 chr1 249250621 + 112116723 112117293 L1PREC2 3366 - 318 848 96641 35 6 4 38 37 20 29 4 2 12 12 7 14 102 89 14 5 6 26 2 0 234 chain 10724 chr1 249250621 + 112122204 112122410 MER47A 366 - 0 216 157305 27 7 18 19 2 0 65 37 38 49 chain 161004 chr1 249250621 + 112149660 112151498 SVA_D 2077 - 16 2001 23195 322 0 10 187 1 0 107 0 49 175 49 0 108 1 0 10 0 2 37 1 138 840 chain 3265 chr1 249250621 + 112150452 112150486 SVA_D 2077 - 641 675 146540 34 chain 19081 chr1 249250621 + 112201001 112201310 Tigger3b 1229 - 478 1191 129880 4 1 0 33 0 17 13 1 3 36 9 10 38 1 0 31 5 15 67 0 376 70 chain 22062 chr1 249250621 + 112205552 112205824 AluSc5 308 - 24 299 119959 10 0 2 26 2 3 234 chain 475935 chr1 249250621 + 112222178 112228894 L1PA7 6471 + 444 6461 7858 99 0 1 17 1 7 110 25 39 58 0 2 32 1 0 206 489 0 209 15 0 76 7 8 54 304 0 153 1 2 357 5 7 13 0 3 266 4 6 181 1 0 65 0 19 198 6 0 69 1 0 4 2 6 32 2 5 141 0 4 181 23 29 381 3 2 63 0 4 27 0 2 85 0 3 737 0 1 4 0 2 8 0 11 92 0 4 136 1 13 230 0 2 45 2 0 295 0 9 192 3 2 166 1 2 436 1 0 52 0 1 308 0 3 40 chain 24729 chr1 249250621 + 112283317 112283622 AluSp 311 + 6 311 106279 4 1 0 269 0 1 31 chain 21910 chr1 249250621 + 112306635 112306921 AluY 311 + 16 300 120586 107 9 6 108 0 1 62 chain 5578 chr1 249250621 + 112337445 112337516 MIR 256 - 106 178 189297 49 0 1 22 chain 59672 chr1 249250621 + 112342550 112343184 SVA_F 1814 + 1181 1814 53007 623 1 0 10 chain 6700 chr1 249250621 + 112373272 112373364 Charlie1 1172 + 866 965 179692 47 3 10 42 chain 20892 chr1 249250621 + 112373866 112374200 MSTA 426 + 0 405 124304 4 1 0 96 7 44 62 3 6 24 7 5 13 3 17 25 1 21 88 chain 22738 chr1 249250621 + 112381024 112381283 AluSx3 311 + 27 287 116882 105 0 1 154 chain 15621 chr1 249250621 + 112475576 112475908 THE1D 372 + 0 344 139519 15 6 8 6 1 0 27 10 1 17 19 20 41 0 4 27 57 72 106 chain 116979 chr1 249250621 + 112481856 112483254 L1PA7 6471 - 4 1405 32136 264 0 4 328 5 0 242 0 5 76 0 1 54 2 0 427 chain 23636 chr1 249250621 + 112502431 112502809 THE1C 375 + 0 375 112385 179 0 3 18 12 6 15 23 11 82 14 27 8 1 0 26 chain 28821 chr1 249250621 + 112514790 112515093 AluYa5 310 - 7 310 89797 303 chain 29541 chr1 249250621 + 112565389 112565699 AluYa5 310 - 0 310 86469 310 chain 6375 chr1 249250621 + 112601964 112602057 MER58A 224 + 99 194 182210 55 2 4 36 chain 18428 chr1 249250621 + 112649682 112649930 Tigger1 2417 - 1020 1269 131699 217 7 8 24 chain 11596 chr1 249250621 + 112650933 112651068 L1PA4 6152 - 9 144 153907 135 chain 3502 chr1 249250621 + 112657486 112657523 MLT2D 439 - 401 438 215332 37 chain 110510 chr1 249250621 + 112662704 112664427 L1PA14 3548 + 1771 3436 34072 26 4 0 93 14 17 68 0 1 5 2 0 100 15 9 143 5 3 132 0 5 158 8 6 7 0 1 83 0 4 43 34 30 37 23 0 178 6 3 14 4 2 14 2 0 47 9 5 16 1 2 87 0 2 6 6 0 13 2 0 6 1 0 16 7 6 62 1 0 114 13 8 36 4 2 10 10 8 15 1 0 22 chain 466717 chr1 249250621 + 112669087 112674717 HERVL-int 5654 - 0 5654 8163 429 1 0 154 8 6 302 0 6 261 2 0 402 0 1 127 0 2 16 0 4 492 1 0 465 0 6 951 6 5 32 2 3 32 3 5 641 7 13 174 0 1 4 7 6 129 0 1 228 0 2 361 0 1 42 2 0 315 0 1 34 chain 30752 chr1 249250621 + 112674829 112675229 MLT2A1 477 - 77 477 82952 15 4 0 62 1 0 149 1 5 25 0 1 143 chain 29628 chr1 249250621 + 112679286 112679700 L1PA8 5853 - 0 414 86124 47 3 10 36 1 0 19 12 11 37 6 5 9 1 0 71 2 0 44 1 0 125 chain 22710 chr1 249250621 + 112692914 112693288 THE1D 372 + 0 372 117033 144 82 80 148 chain 8340 chr1 249250621 + 112697269 112697378 L1MA3 4352 - 92 197 169172 26 4 0 79 chain 546756 chr1 249250621 + 112697421 112703432 L1PA2 6032 - 5 6031 1858 9 0 1 247 1 0 3846 1 0 1767 3 19 137 chain 14000 chr1 249250621 + 112719100 112719341 Tigger3a 397 + 45 334 144581 30 42 66 7 0 10 72 0 13 48 1 2 41 chain 553545 chr1 249250621 + 112741767 112747918 L1PA3long 6157 - 0 6153 999 779 1 0 3022 0 2 1928 5 6 416 chain 520617 chr1 249250621 + 112754290 112760412 L1PA5 6144 + 0 6130 5092 121 0 14 21 0 12 331 0 1 24 1 5 76 0 1 73 0 1 256 0 1 233 9 0 257 1 0 766 0 2 85 18 0 28 2 0 35 0 2 899 0 3 421 4 0 103 0 1 162 1 0 1358 1 2 836 chain 547527 chr1 249250621 + 112764040 112770058 L1PA2 6032 + 0 6030 1765 149 3 1 6 0 2 55 0 1 152 0 9 2518 0 1 2617 0 1 518 chain 23296 chr1 249250621 + 112784599 112784874 AluSc8 310 + 5 283 114226 126 1 4 148 chain 23292 chr1 249250621 + 112795186 112795461 AluY 311 + 23 299 114239 109 0 1 166 chain 5415 chr1 249250621 + 112802801 112802922 LTR33 499 + 25 145 190841 50 46 45 25 chain 24387 chr1 249250621 + 112829053 112829340 L1PA6 6164 + 5875 6162 108152 287 chain 524556 chr1 249250621 + 112830674 112839318 L1PA5 6144 + 33 6138 4722 291 0 20 831 0 3 757 1 2 1221 1 0 308 0 1 15 0 4 368 0 2 620 2578 0 440 0 1 38 7 16 323 2 1 517 0 1 23 1 0 302 chain 160572 chr1 249250621 + 112835231 112837663 SVA_E 1901 + 0 1901 23259 153 1 0 467 0 40 157 1 0 26 2 0 80 568 15 157 1 0 33 42 0 39 25 53 8 0 1 61 1 2 4 1 0 605 chain 2933 chr1 249250621 + 112836119 112836153 SVA_E 1901 + 1095 1129 148830 34 chain 6060 chr1 249250621 + 112836219 112836286 SVA_F 1814 + 893 1024 108998 17 0 64 50 chain 27787 chr1 249250621 + 112836286 112836606 SVA_F 1814 + 664 1219 93745 65 0 233 214 0 1 37 0 1 4 chain 2354 chr1 249250621 + 112836606 112836653 SVA_F 1814 + 993 1038 138291 8 1 0 11 1 0 26 chain 99730 chr1 249250621 + 112882980 112884066 L1PA3long 6157 + 5069 6157 36850 237 0 1 693 0 1 156 chain 42662 chr1 249250621 + 112892384 112892879 L1PA7 6471 - 3 499 65828 145 0 1 350 chain 13548 chr1 249250621 + 112915732 112915898 L1PB4 2604 + 2386 2552 146175 166 chain 23721 chr1 249250621 + 112915954 112916321 THE1D 372 - 0 372 111928 125 3 9 10 40 36 17 1 0 43 5 9 123 chain 3029 chr1 249250621 + 112926533 112926565 MER31B 477 - 445 477 224409 32 chain 3213 chr1 249250621 + 112965968 112966084 L1MA8 2339 + 2233 2327 220690 24 3 0 7 56 37 26 chain 42610 chr1 249250621 + 112980764 112981320 L1PREC2 3366 - 731 1273 65886 259 0 1 59 27 0 115 0 12 96 chain 4296 chr1 249250621 + 112997281 112997333 MER103C 291 + 76 128 203297 52 chain 30372 chr1 249250621 + 113012535 113012928 L1M1 2793 - 761 1162 83733 20 0 4 173 0 3 167 0 1 33 chain 8795 chr1 249250621 + 113025677 113025801 FAM 185 + 23 143 166666 14 8 3 20 0 1 82 chain 21303 chr1 249250621 + 113040546 113040866 L1PA8 5853 - 6 332 122848 87 4 0 16 1 0 43 3 1 18 1 0 30 0 17 27 2 0 40 9 8 39 chain 4303 chr1 249250621 + 113081775 113081824 MER5A1 166 - 31 80 203187 49 chain 22554 chr1 249250621 + 113085900 113086177 AluSc 308 + 11 288 117792 162 1 0 10 0 1 104 chain 41487 chr1 249250621 + 113114509 113115077 Tigger1 2417 - 881 1456 67298 143 6 9 75 17 20 238 4 5 85 chain 5367 chr1 249250621 + 113129735 113129904 L1MB7 1623 - 828 995 191341 56 82 82 6 2 0 23 chain 5196 chr1 249250621 + 113142995 113143057 MER41B 635 + 485 547 193076 62 chain 23889 chr1 249250621 + 113170303 113170594 AluSp 311 + 11 294 110962 26 8 0 257 chain 107244 chr1 249250621 + 113182389 113183851 SVA_D 2077 + 727 2070 34901 72 0 79 29 2 0 5 2 0 5 0 38 81 0 2 145 49 0 205 0 1 2 146 0 10 40 0 669 chain 4382 chr1 249250621 + 113182730 113182779 SVA_D 2077 + 1310 1359 65179 49 chain 7377 chr1 249250621 + 113182986 113183132 SVA_D 2077 + 1087 1252 68778 4 0 2 133 0 17 9 chain 2021 chr1 249250621 + 113183142 113183182 SVA_D 2077 + 1262 1302 68778 40 chain 33627 chr1 249250621 + 113267055 113267421 L1PA2 6032 + 5668 6032 78202 351 2 0 13 chain 82482 chr1 249250621 + 113271033 113272032 SVA_A 1864 + 58 1852 42548 51 0 10 302 0 821 39 3 0 36 38 10 329 2 1 58 4 0 137 chain 6193 chr1 249250621 + 113281587 113281674 L1PA13 3608 + 3396 3478 183635 48 2 0 4 2 0 20 1 0 10 chain 3466 chr1 249250621 + 113289421 113289496 L1ME1 1623 - 883 957 215869 17 8 7 26 1 0 6 2 3 15 chain 4839 chr1 249250621 + 113306868 113306946 L1PB3 3668 - 102 178 196891 24 0 1 12 3 1 30 1 0 8 chain 84317 chr1 249250621 + 113308271 113309304 MER11C 1089 + 0 1063 41781 249 0 1 56 7 11 118 0 19 235 1 5 43 0 1 127 0 1 197 chain 88496 chr1 249250621 + 113316075 113317602 SVA_F 1814 + 801 1814 40187 6 0 2 5 0 3 38 1 0 25 0 1 11 1 0 56 0 15 38 1 0 180 532 0 633 chain 4817 chr1 249250621 + 113316437 113316548 SVA_F 1814 + 1005 1116 122982 111 chain 8832 chr1 249250621 + 113316616 113316968 SVA_F 1814 + 805 1005 106090 11 1 0 11 36 0 28 50 0 43 79 0 49 0 15 39 1 0 4 chain 3142 chr1 249250621 + 113316641 113316675 SVA_F 1814 + 1208 1243 185186 32 0 1 2 chain 1302 chr1 249250621 + 113316703 113316733 SVA_F 1814 + 1144 1174 122982 30 chain 3387 chr1 249250621 + 113316797 113316834 SVA_F 1814 + 1011 1048 136515 37 chain 1779 chr1 249250621 + 113316834 113316875 SVA_F 1814 + 1224 1265 122982 41 chain 7451 chr1 249250621 + 113326449 113326555 MER30 238 - 5 108 174436 27 10 7 69 chain 8930 chr1 249250621 + 113326971 113327131 MSTA-int 1630 - 1469 1630 165981 46 3 0 6 30 34 75 chain 24518 chr1 249250621 + 113327518 113327806 AluSc 308 - 9 297 107451 288 chain 22793 chr1 249250621 + 113334639 113334987 MER4B 649 - 16 370 116617 69 1 0 108 37 49 42 5 0 86 chain 22570 chr1 249250621 + 113337837 113338117 AluSp 311 + 12 303 117717 218 10 21 52 chain 19183 chr1 249250621 + 113341311 113341538 AluSp 311 + 87 311 129577 158 3 0 66 chain 28519 chr1 249250621 + 113352288 113352694 LTR7 482 + 0 475 91100 69 8 46 109 9 41 20 13 11 9 0 1 169 chain 260812 chr1 249250621 + 113352704 113356099 HERVH-int 3825 + 0 3825 15652 181 0 2 150 1 0 77 11 10 26 119 353 388 0 5 34 15 0 188 3 0 16 9 0 349 0 1 226 0 4 62 17 22 29 9 0 508 0 9 313 7 0 133 0 3 29 0 200 7 0 10 39 0 1 258 0 1 191 chain 25368 chr1 249250621 + 113357614 113357947 LTR7 482 + 0 459 102838 69 8 46 77 1 88 25 0 1 153 chain 92356 chr1 249250621 + 113359399 113360425 LTR5A 1029 - 0 1029 38856 182 0 4 696 1 0 147 chain 26876 chr1 249250621 + 113362766 113363153 LTR7 482 - 10 482 96715 88 9 11 64 1 2 13 0 31 38 0 1 60 13 63 101 chain 219910 chr1 249250621 + 113364885 113368280 HERVH-int 3825 - 260 3825 17882 198 13 14 58 3 4 26 11 22 57 0 367 93 6 0 493 320 1 55 0 1 16 1 0 151 0 4 192 51 36 199 5 0 37 0 1 4 1 0 105 9 0 104 7 0 101 15 0 80 1 0 366 0 265 30 2 0 10 128 29 30 15 14 22 15 16 30 2 1 333 chain 257853 chr1 249250621 + 113370534 113373798 Harlequin-int 5206 + 125 3426 15818 10 3 1 30 6 3 117 0 5 9 1 0 70 1 0 6 0 1 106 2 0 90 2 4 24 1 2 79 1 0 47 8 15 58 0 3 57 21 1 123 0 39 196 0 1 1327 23 18 187 1 0 10 0 9 162 2 1 385 0 5 61 0 1 4 1 0 23 0 1 10 chain 33447 chr1 249250621 + 113374883 113375346 LTR2 463 + 0 463 78493 129 0 3 167 9 5 64 0 1 4 24 25 9 1 0 56 chain 38589 chr1 249250621 + 113395678 113396193 MER41A 554 + 5 531 71304 78 2 1 10 0 1 138 1 4 159 7 10 62 0 5 58 chain 5592 chr1 249250621 + 113396226 113396289 L1MB5 1630 + 1407 1470 189155 63 chain 118245 chr1 249250621 + 113396310 113397706 LTR12C 1709 - 0 1709 31710 64 0 4 29 1 34 257 0 2 91 0 4 106 3 1 5 1 0 104 0 278 118 0 1 485 1 0 102 5 0 24 chain 7925 chr1 249250621 + 113403673 113403795 Ricksha_0 1343 + 1162 1282 171485 21 16 14 85 chain 38853 chr1 249250621 + 113411365 113411866 LTR2C 499 + 6 499 70940 168 27 18 225 18 19 63 chain 23692 chr1 249250621 + 113412928 113413211 AluSp 311 - 17 301 112071 99 0 1 184 chain 5233 chr1 249250621 + 113417050 113417114 MLT1F1 559 + 0 63 192703 12 1 0 51 chain 22540 chr1 249250621 + 113424058 113424325 AluSp 311 - 22 289 117848 267 chain 3315 chr1 249250621 + 113437782 113437819 LTR12C 1709 + 1118 1155 218689 37 chain 5022 chr1 249250621 + 113437925 113438191 LTR12C 1709 + 650 718 194913 33 198 0 35 chain 135530 chr1 249250621 + 113440247 113441932 SVA_F 1814 - 0 1479 26921 19 0 4 271 0 2 331 1 0 10 1 0 211 3 18 33 225 0 580 chain 14597 chr1 249250621 + 113441127 113441320 SVA_F 1814 - 659 852 105016 193 chain 23447 chr1 249250621 + 113443534 113443818 AluSp 311 - 16 300 113394 284 chain 6268 chr1 249250621 + 113482568 113482650 Charlie1a 1436 - 381 466 183021 24 0 3 58 chain 8071 chr1 249250621 + 113483502 113483645 L1PA16 3655 + 3421 3578 170645 25 8 12 19 5 11 15 3 7 68 chain 24923 chr1 249250621 + 113483900 113484194 AluSp 311 - 9 301 105200 152 1 0 18 1 0 122 chain 7902 chr1 249250621 + 113492458 113492735 Charlie4a 502 - 69 397 171645 33 165 216 79 chain 3831 chr1 249250621 + 113503792 113503842 L1MA6 2487 - 101 148 209900 7 3 0 40 chain 7354 chr1 249250621 + 113506588 113506681 L1PA4 6152 + 6058 6145 175061 78 6 0 9 chain 3202 chr1 249250621 + 113509068 113509128 MIR 256 - 115 179 220898 13 10 0 4 0 14 33 chain 12031 chr1 249250621 + 113512525 113512654 L1PA3long 6157 + 6028 6157 152070 129 chain 12442 chr1 249250621 + 113524855 113525000 L1PA5 6144 + 5999 6144 150487 145 chain 18355 chr1 249250621 + 113529526 113529753 AluY 311 + 82 307 131919 207 2 0 18 chain 23868 chr1 249250621 + 113545487 113545757 AluSg7 307 - 11 282 111095 169 0 1 101 chain 20309 chr1 249250621 + 113549561 113549801 AluSg 306 + 17 257 126206 240 chain 23766 chr1 249250621 + 113559239 113559527 AluY 311 + 10 299 111671 122 0 1 10 3 0 7 0 3 146 chain 24044 chr1 249250621 + 113562984 113563277 AluY 311 + 6 299 110088 58 2 0 68 0 1 73 1 2 91 chain 24429 chr1 249250621 + 113580900 113581209 AluY 311 + 0 303 107918 118 7 0 14 0 1 10 3 0 7 0 3 150 chain 11328 chr1 249250621 + 113581217 113581737 Tigger2b_Pri 1066 + 167 378 154972 100 359 50 61 chain 23267 chr1 249250621 + 113595362 113595630 AluSp 311 - 27 295 114350 268 chain 24388 chr1 249250621 + 113604141 113604428 AluSp 311 - 12 299 108149 287 chain 131726 chr1 249250621 + 113605576 113607027 SVA_C 1631 - 23 1609 27692 618 0 134 284 0 1 549 chain 135822 chr1 249250621 + 113611438 113613774 SVA_F 1814 + 335 1814 26877 545 1 0 20 451 0 37 1 0 10 0 15 225 419 0 627 chain 2330 chr1 249250621 + 113612021 113612049 SVA_F 1814 + 867 897 234980 19 0 2 9 chain 13528 chr1 249250621 + 113612050 113612229 SVA_F 1814 + 897 1091 82275 51 3 18 125 chain 4057 chr1 249250621 + 113612229 113612276 SVA_F 1814 + 900 947 204177 47 chain 15574 chr1 249250621 + 113612278 113612455 SVA_F 1814 + 899 1091 78660 49 3 18 125 chain 6551 chr1 249250621 + 113612796 113612906 SVA_F 1814 + 1028 1138 140307 110 chain 3527 chr1 249250621 + 113612906 113612945 SVA_F 1814 + 962 1001 171286 39 chain 1999 chr1 249250621 + 113612957 113612993 SVA_F 1814 + 1011 1047 173874 36 chain 6921 chr1 249250621 + 113612998 113613096 SVA_F 1814 + 898 1011 136492 49 0 15 49 chain 2620 chr1 249250621 + 113613096 113613123 SVA_F 1814 + 1187 1214 149789 27 chain 41336 chr1 249250621 + 113620374 113620837 L1PA5 6144 - 15 478 67487 463 chain 10281 chr1 249250621 + 113624072 113624185 AluSc 308 - 136 249 159229 113 chain 9152 chr1 249250621 + 113625041 113625153 MSTB 430 - 40 152 164799 112 chain 16896 chr1 249250621 + 113626424 113626619 L1PA5 6144 + 5933 6128 135854 195 chain 15483 chr1 249250621 + 113636232 113636404 L1PA3long 6157 + 5984 6156 139948 172 chain 5810 chr1 249250621 + 113661602 113661694 MIR 256 + 90 181 187039 22 13 12 57 chain 23784 chr1 249250621 + 113663127 113663431 AluSp 311 - 9 311 111568 21 6 4 277 chain 23658 chr1 249250621 + 113671660 113671950 AluSc 308 + 0 298 112262 52 8 16 230 chain 27090 chr1 249250621 + 113698712 113699103 MSTA 426 - 1 404 95969 219 11 1 49 8 12 12 9 27 83 chain 6777 chr1 249250621 + 113704978 113705058 L1PA8 5853 - 0 80 179129 80 chain 44144 chr1 249250621 + 113715456 113716258 MER9a3 513 + 0 513 64023 175 289 0 338 chain 26631 chr1 249250621 + 113715640 113715920 AluYa5 310 - 5 285 97555 280 chain 32469 chr1 249250621 + 113718029 113718793 MER57A1 433 - 0 433 80078 100 0 1 43 338 2 6 1 0 4 0 1 259 0 4 13 chain 6179 chr1 249250621 + 113728811 113728883 L1MA4A 3247 + 3035 3107 183754 72 chain 4068 chr1 249250621 + 113738948 113739075 MER21B 843 + 326 483 206378 29 62 72 12 0 20 24 chain 38884 chr1 249250621 + 113743855 113744351 Tigger1 2417 + 1258 1759 70889 125 0 1 4 0 2 144 1 0 129 9 12 84 chain 22095 chr1 249250621 + 113744394 113744699 LTR23 429 + 106 411 119811 32 10 11 134 1 0 128 chain 38669 chr1 249250621 + 113744945 113745450 LTR10D 510 + 0 510 71195 64 1 0 4 8 18 15 11 0 89 0 4 68 0 2 27 0 1 218 chain 55255 chr1 249250621 + 113746979 113747791 L1MA1 4479 - 322 1119 55551 6 1 0 9 1 0 31 6 4 29 1 0 16 0 16 7 13 0 87 15 11 82 1 0 13 2 0 20 1 0 71 1 0 9 8 7 25 1 0 184 0 3 12 2 0 29 1 0 5 0 1 91 3 0 29 chain 5464 chr1 249250621 + 113748583 113748654 MLT1B 390 - 315 390 190370 48 0 3 17 0 1 6 chain 37693 chr1 249250621 + 113761523 113761977 MER4A1 472 + 0 472 72564 229 0 15 63 0 2 52 0 1 110 chain 17724 chr1 249250621 + 113784385 113784585 L1PA7 6471 + 6268 6467 133635 47 1 0 152 chain 11548 chr1 249250621 + 113784855 113784985 L1PA7 6471 - 8 138 154109 130 chain 19776 chr1 249250621 + 113814454 113814856 L1PB1 5432 - 14 393 127887 14 1 0 9 0 3 22 1 0 25 1 2 11 12 9 15 14 5 22 1 0 44 1 0 16 2 1 53 2 0 9 16 11 11 2 1 21 1 0 4 11 10 61 chain 17727 chr1 249250621 + 113830912 113831108 L1PA3long 6157 + 5946 6142 133630 196 chain 39794 chr1 249250621 + 113847518 113847960 L1PA4 6152 - 9 450 69633 251 1 0 190 chain 6516 chr1 249250621 + 113849758 113849860 MER44A 345 - 31 132 181120 45 6 5 51 chain 3362 chr1 249250621 + 113857161 113857198 L1M1 2793 + 2246 2283 217801 37 chain 129895 chr1 249250621 + 113860263 113861793 L1PA6 6164 + 4622 6152 28109 379 1 2 312 1 9 435 9 0 393 chain 13799 chr1 249250621 + 113862651 113862821 L1MA3 4352 + 3912 4082 145273 170 chain 22084 chr1 249250621 + 113880567 113880858 AluSp 311 - 13 300 119870 155 17 10 5 0 3 114 chain 368299 chr1 249250621 + 113884239 113888412 L1HS 6032 + 1866 6032 11147 37 1 0 5 0 1 283 7 0 894 0 1 730 1 2 2208 2 0 5 chain 87290 chr1 249250621 + 113888414 113889427 L1PA4 6152 + 5126 6146 40648 180 0 3 508 6 7 8 0 1 168 0 1 36 0 1 107 chain 2034 chr1 249250621 + 113901851 113902094 MER9a1 513 + 0 243 78344 243 chain 102352 chr1 249250621 + 113902094 113903210 L1PA2 6032 - 2391 3507 36099 1116 chain 219800 chr1 249250621 + 113903210 113905572 L1PA2 6032 + 3667 6029 17892 2362 chain 1883 chr1 249250621 + 113905632 113905857 MER9a1 513 + 267 494 78344 187 0 2 38 chain 5018 chr1 249250621 + 113908799 113908881 MER96B 391 - 224 305 194949 47 3 4 10 2 0 20 chain 33411 chr1 249250621 + 113923724 113924717 L1MA7 2200 - 184 815 78544 18 35 31 6 7 0 10 6 4 117 3 0 24 50 13 72 13 12 5 0 2 12 0 17 49 10 0 16 4 0 55 1 0 20 346 34 114 chain 240266 chr1 249250621 + 113954505 113957316 L1PA6 6164 - 6 2821 16755 100 0 1 35 1 0 4 1 2 12 0 1 683 3 0 5 1 0 1242 0 1 457 0 1 91 0 1 63 1 4 112 chain 21770 chr1 249250621 + 113997127 113997382 L1PA7 6471 - 8 264 121131 63 2 0 5 0 2 31 0 1 154 chain 122588 chr1 249250621 + 114002406 114004438 L1PA14 3548 + 1789 3485 30195 386 1 0 305 1 6 49 327 12 59 2 1 82 1 0 242 10 8 14 2 0 33 6 5 10 2 0 4 2 0 108 21 24 84 1 0 111 1 0 9 5 2 36 4 2 12 1 0 5 1 0 16 1 0 41 6 0 10 1 0 20 chain 518687 chr1 249250621 + 114015888 114022004 L1PA6 6164 - 3 6164 5310 98 4 0 53 1 0 184 1 0 504 0 4 549 0 24 162 1 2 211 0 2 440 0 5 27 0 1 159 4 9 447 0 7 765 1 0 165 0 1 8 3 0 1402 0 4 362 1 0 47 0 2 52 4 2 224 0 2 237 chain 123352 chr1 249250621 + 114026893 114029134 L1PB1 5432 - 10 1754 29931 4 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 17 22 11 14 6 5 42 1 0 16 2 1 52 2 0 9 27 21 15 10 7 14 420 4 19 0 2 48 0 1 129 1 0 4 0 1 11 0 6 73 1 0 165 3 0 9 9 0 24 2 7 676 40 0 27 5 0 157 20 17 44 chain 231519 chr1 249250621 + 114032345 114035870 L1PA13 3608 + 86 3548 17229 4 1 0 19 7 5 22 10 7 21 2 1 12 0 1 17 34 23 73 2 0 111 1 0 14 14 12 17 2 0 15 11 6 15 1 0 19 3 1 15 0 1 18 1 0 43 0 4 49 2 0 126 0 1 48 0 1 22 31 37 20 0 1 53 0 1 167 10 1 53 5 7 11 4 0 62 5 9 47 0 4 232 0 4 76 6 5 30 2 1 142 0 1 81 0 1 86 4 8 27 16 20 106 1 0 209 8 7 51 0 2 439 33 1 60 4 8 146 17 19 68 1 0 4 0 1 23 1 0 107 5 7 62 2 1 54 1 0 5 2 0 45 22 18 9 1 0 24 20 12 14 14 7 12 3 0 11 chain 5612 chr1 249250621 + 114038026 114038166 L1PB1 5432 - 28 152 188963 13 4 6 15 1 0 24 2 0 14 9 6 17 10 1 8 2 0 4 1 0 16 chain 565217 chr1 249250621 + 114039842 114045854 L1HS 6032 + 21 6032 196 5998 1 0 13 chain 194724 chr1 249250621 + 114055237 114057407 L1PA3long 6157 + 3984 6157 19601 1136 1 0 190 0 4 689 1 0 11 0 1 82 1 0 55 0 1 4 chain 115584 chr1 249250621 + 114065924 114067444 THE1B-int 1605 + 27 1592 32588 47 0 7 349 0 25 228 27 28 240 0 1 4 1 0 161 2 10 224 1 2 132 1 0 4 0 1 4 1 3 46 1 2 47 chain 24698 chr1 249250621 + 114067457 114067818 THE1B 368 + 0 368 106448 169 1 0 29 35 45 70 1 0 18 1 0 37 chain 7928 chr1 249250621 + 114075833 114076018 L1PA16 3655 + 3365 3552 171460 49 6 7 45 61 62 24 chain 11001 chr1 249250621 + 114082168 114082290 L1PA3long 6157 - 1 123 156202 122 chain 24241 chr1 249250621 + 114092750 114093048 AluYk4 311 + 0 292 108991 126 7 0 15 9 10 141 chain 273086 chr1 249250621 + 114100655 114105208 L1PA11 4918 + 1 3682 15011 41 2 0 36 5 1 23 14 13 15 2 0 50 1 0 33 2 0 5 2 1 78 1 4 24 10 11 5 0 1 296 5 0 161 10 9 48 16 33 153 4 1 62 1 0 241 2 18 20 14 0 7 12 0 123 313 0 73 0 1 227 0 1 53 245 0 391 5 9 66 1 0 89 1 0 236 0 1 260 0 2 293 0 2 36 2 0 142 5 4 24 4 3 93 308 1 145 1 0 16 chain 22531 chr1 249250621 + 114104755 114105035 AluY 311 + 10 295 117889 111 0 3 136 5 7 28 chain 469560 chr1 249250621 + 114112509 114118547 L1PA8 5853 - 0 5745 8047 92 2 1 18 1 0 50 1 0 9 6 5 70 2 0 46 1 0 552 2 0 633 7 8 363 1 0 626 0 1 424 21 25 112 305 0 409 4 7 270 0 3 111 2 1 58 2 0 50 1 0 230 0 6 145 6 5 33 0 2 25 0 1 928 0 1 224 0 4 42 0 1 154 chain 12809 chr1 249250621 + 114125778 114125917 L1PA5 6144 - 9 148 149019 139 chain 12116 chr1 249250621 + 114141585 114141719 L1PA3long 6157 - 3126 3262 151399 74 0 2 60 chain 284296 chr1 249250621 + 114141719 114144854 L1PA3long 6157 + 3021 6157 14398 284 1 0 1198 1 2 238 0 2 375 1 0 1037 chain 63303 chr1 249250621 + 114144861 114146212 L1PB3 3668 + 476 1435 51321 208 0 2 10 0 1 117 15 20 13 1 0 40 354 5 31 1 0 51 0 3 25 29 0 65 18 8 27 1 2 65 0 4 31 2 0 5 46 30 196 chain 557123 chr1 249250621 + 114175527 114182002 L1PA3long 6157 - 0 6153 597 323 332 0 826 0 2 261 0 2 451 0 7 202 0 1 780 1 0 971 6 5 2322 chain 28962 chr1 249250621 + 114175872 114176182 AluYa5 310 - 0 310 89169 310 chain 61983 chr1 249250621 + 114182674 114183513 L1PA8 5853 + 5016 5853 51906 415 1 2 131 1 0 44 2 0 8 1 5 58 1 0 21 7 6 34 2 1 19 1 0 93 chain 29881 chr1 249250621 + 114211191 114211503 AluYb8 318 - 6 318 85162 312 chain 14982 chr1 249250621 + 114221900 114222121 L1PA16 3655 - 79 297 141379 115 3 0 25 5 4 11 5 6 57 chain 3202 chr1 249250621 + 114245502 114245536 L1MC4 1079 + 837 871 220905 34 chain 27304 chr1 249250621 + 114260187 114260544 THE1A 353 - 0 353 95266 101 2 0 38 6 5 99 2 1 109 chain 123156 chr1 249250621 + 114260562 114262421 THE1A-int 1579 - 18 1579 29989 63 0 5 264 2 0 187 0 3 61 2 1 59 1 0 16 0 14 316 0 1 73 318 0 365 0 1 132 chain 45900 chr1 249250621 + 114270742 114271756 L1MA2 4263 + 3432 4113 62129 31 6 6 115 13 9 85 1 4 127 8 5 110 325 0 21 19 23 90 7 0 47 1 0 8 chain 24008 chr1 249250621 + 114298393 114298705 AluY 311 + 0 299 110280 24 8 1 98 7 0 9 0 1 166 chain 3936 chr1 249250621 + 114335745 114335804 MER5A1 166 - 4 71 208327 34 4 12 21 chain 29581 chr1 249250621 + 114369281 114369590 AluYa5 310 - 1 310 86266 309 chain 28762 chr1 249250621 + 114385441 114385741 AluYa8 305 + 0 300 90061 300 chain 23329 chr1 249250621 + 114467803 114468076 AluSg7 307 - 33 307 114040 142 0 1 131 chain 42835 chr1 249250621 + 114528243 114528733 MER9a3 513 - 22 513 65611 477 0 1 13 chain 18431 chr1 249250621 + 114537874 114538199 L1M2c 2366 + 1993 2299 131687 25 2 1 50 1 0 19 1 0 18 2 0 33 2 0 43 1 0 10 8 6 46 3 0 10 1 0 10 1 0 4 3 2 8 3 1 16 1 0 4 chain 19453 chr1 249250621 + 114549485 114549835 THE1D 372 - 12 372 128811 20 1 0 24 7 8 84 66 72 20 6 10 122 chain 123805 chr1 249250621 + 114562062 114563637 THE1A-int 1579 + 0 1579 29770 498 1 0 4 0 1 427 2 3 133 0 7 19 3 0 56 2 0 372 0 1 58 chain 27451 chr1 249250621 + 114563637 114563990 THE1A 353 + 0 353 94811 47 0 1 48 2 1 236 0 2 8 2 0 10 chain 33158 chr1 249250621 + 114567787 114568626 MER4B 649 + 112 640 78970 4 0 1 82 0 23 95 4 1 46 5 0 59 8 0 53 1 0 34 333 17 37 17 16 53 1 0 7 chain 19373 chr1 249250621 + 114572293 114572555 HERVH-int 3825 + 3301 3564 129016 52 13 14 197 chain 11213 chr1 249250621 + 114578304 114578530 MER30 238 - 0 238 155378 71 6 0 9 0 6 29 4 16 49 43 43 15 chain 46030 chr1 249250621 + 114579290 114580418 MER50 708 - 22 708 62014 231 4 5 84 9 8 47 483 36 207 20 25 43 chain 39740 chr1 249250621 + 114579696 114580147 LTR7 482 + 0 482 69700 263 4 35 184 chain 3444 chr1 249250621 + 114580596 114580634 LTR23 429 + 238 276 216291 38 chain 11842 chr1 249250621 + 114580750 114580944 LTR23 429 - 253 429 152861 64 9 0 8 29 20 84 chain 8439 chr1 249250621 + 114595283 114595470 L1PB1 5432 - 10 176 168627 16 2 0 5 0 1 9 1 0 21 1 0 24 2 0 14 9 6 15 9 0 11 2 0 4 1 0 16 2 1 23 chain 81956 chr1 249250621 + 114600769 114601742 LTR5_Hs 974 + 0 974 42781 239 1 0 45 1 2 9 4 0 529 0 7 40 2 0 103 chain 31317 chr1 249250621 + 114607739 114608163 MLT2A1 477 - 0 477 81963 32 8 52 61 0 4 154 1 5 18 8 9 142 chain 459209 chr1 249250621 + 114608163 114614099 HERVL-int 5654 - 0 5654 8435 74 0 3 133 1 8 7 6 0 143 0 3 288 6 14 50 314 0 27 0 3 1149 5 6 390 5 8 531 0 2 319 0 23 107 16 8 100 0 1 427 0 5 68 3 1 286 0 14 571 10 15 261 33 0 378 1 4 227 chain 30322 chr1 249250621 + 114614221 114614602 MLT2A1 477 - 91 477 83861 213 1 5 15 10 11 142 chain 12370 chr1 249250621 + 114685591 114686275 Tigger1 2417 + 1469 2373 150755 108 506 726 70 chain 495804 chr1 249250621 + 114725251 114730866 L1PA5 6144 - 2 6144 7084 261 1 0 587 1 0 862 0 1 1134 0 1 469 0 4 1396 1 0 380 3 2 429 0 525 91 chain 19772 chr1 249250621 + 114736531 114736885 THE1D 372 - 0 372 127902 31 6 5 92 0 6 17 51 55 61 6 5 25 4 14 61 chain 67718 chr1 249250621 + 114736885 114737761 L1MA2 4263 - 747 1618 49358 42 1 0 4 2 0 560 1 2 139 3 1 13 1 0 110 chain 51522 chr1 249250621 + 114746972 114748360 L1PB1 5432 + 4603 5421 57949 18 0 1 83 0 2 97 0 9 71 0 3 64 1 3 139 0 1 9 589 31 11 1 0 11 9 5 7 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 2 0 7 10 1 19 2 0 5 1 0 14 6 4 20 1 0 21 1 0 13 1 0 17 chain 3282 chr1 249250621 + 114781281 114781431 MER3 215 + 6 163 219318 19 97 104 34 chain 532439 chr1 249250621 + 114781887 114790559 L1PA7 6471 + 0 6443 3918 228 16 1 43 6 7 126 1 2 212 0 1 230 0 1 6 2 1 352 0 4 21 0 4 901 1 0 18 314 0 101 1899 0 270 11 9 247 0 1 710 2 1 192 16 5 142 1 0 116 1 0 527 0 8 285 1 2 48 9 10 757 10 14 19 0 2 146 2 1 365 1 0 16 0 2 110 0 2 41 9 8 98 9 0 5 4 0 25 chain 147703 chr1 249250621 + 114784501 114786351 SVA_A 1864 + 18 1849 24921 561 0 37 104 3 0 45 0 2 35 3 0 58 0 36 18 3 0 32 40 0 37 8 5 156 2 1 100 2 0 15 39 0 589 chain 31792 chr1 249250621 + 114832649 114833074 MLT2A1 477 + 6 472 81184 137 6 8 15 3 7 151 1 0 61 3 39 48 chain 525285 chr1 249250621 + 114846619 114852739 L1PA3long 6157 + 4 6157 4660 116 4 17 4 0 1 12 26 12 408 0 1 54 0 1 68 0 7 462 0 3 1026 0 1 355 0 21 1115 2 1 470 9 8 1216 0 1 380 0 1 30 1 0 362 chain 33186 chr1 249250621 + 114852760 114853133 L1PA4 6152 + 5768 6141 78922 373 chain 9828 chr1 249250621 + 114902180 114902366 LOR1-int 1871 + 955 1186 161463 44 13 10 19 20 69 33 1 0 56 chain 32875 chr1 249250621 + 114903505 114903958 MER4A1 472 + 0 470 79408 93 8 1 136 0 22 139 11 13 66 chain 182044 chr1 249250621 + 114907978 114910119 Harlequin-int 5206 - 2945 5069 20779 325 2 0 1258 1 0 193 5 0 178 1 0 13 3 0 5 6 1 151 chain 203633 chr1 249250621 + 114915124 114918630 MER4-int 2692 + 67 2680 18951 32 1 0 11 9 10 8 1 0 281 0 1 68 9 1 255 0 5 179 0 1 119 1 0 409 0 4 21 0 1 13 298 0 168 7 1 129 0 2 78 0 1 73 7 8 55 1 0 24 600 0 248 3 0 7 7 2 293 0 14 91 chain 33645 chr1 249250621 + 114918645 114919084 MER4A1 472 + 0 456 78179 93 8 1 136 0 22 127 0 2 75 chain 43291 chr1 249250621 + 114925618 114926344 L1PB1 5432 + 4717 5417 65064 85 1 4 191 1 2 38 9 10 56 6 5 5 0 1 24 1 0 8 1 0 10 23 14 23 8 9 18 2 1 15 1 0 38 11 10 11 1 0 7 20 10 15 2 0 4 1 0 14 1 0 25 1 0 21 1 0 13 1 0 13 chain 7030 chr1 249250621 + 115002402 115002484 LTR54 533 + 1 83 177254 82 chain 4804 chr1 249250621 + 115007599 115007728 MLT1D 503 + 376 503 197311 18 52 51 30 1 0 28 chain 39882 chr1 249250621 + 115015581 115016355 LTR10F 562 - 8 562 69482 52 275 6 264 0 42 112 0 5 31 0 2 40 chain 20677 chr1 249250621 + 115017234 115017528 AluSp 311 + 11 295 125045 37 2 0 5 11 5 72 1 0 143 6 5 17 chain 59773 chr1 249250621 + 115022431 115023117 SVA_C 1631 + 851 1630 52946 13 0 92 47 0 1 33 0 1 155 0 1 64 1 0 289 0 1 63 2 0 19 chain 30154 chr1 249250621 + 115030237 115030552 AluYb8 318 + 0 315 84319 315 chain 4746 chr1 249250621 + 115093613 115093672 L1MB3 1562 - 15 73 197954 24 1 0 34 chain 27170 chr1 249250621 + 115104807 115105128 L1P1 4361 - 3475 3813 94896 40 10 27 271 chain 120671 chr1 249250621 + 115105128 115106514 L1PA5 6144 + 4738 6139 30810 131 2 1 421 0 4 183 1 0 41 1 8 157 0 2 60 0 3 77 0 1 312 chain 23770 chr1 249250621 + 115109444 115109726 AluSc 308 - 17 299 111650 282 chain 20413 chr1 249250621 + 115142507 115142739 L1PA5 6144 + 5903 6134 125855 93 1 0 138 chain 2906 chr1 249250621 + 115150394 115150427 MIRb 242 - 3 36 226936 33 chain 24118 chr1 249250621 + 115159485 115159806 THE1A 353 - 31 352 109646 125 5 6 81 3 2 107 chain 3143 chr1 249250621 + 115208192 115208228 Tigger5 388 + 316 352 222119 36 chain 12183 chr1 249250621 + 115242058 115242212 L1PA7 6471 - 5 159 151480 8 3 0 115 0 3 28 chain 7864 chr1 249250621 + 115270340 115270441 HY1 111 + 0 106 171906 35 0 6 21 1 0 44 chain 3423 chr1 249250621 + 115274732 115274790 MER30 238 + 98 179 216714 12 5 28 41 chain 40912 chr1 249250621 + 115304898 115305368 L1PA5 6144 + 5662 6132 68018 327 0 1 12 1 0 130 chain 14602 chr1 249250621 + 115307997 115308213 THE1C 375 + 155 375 142579 36 22 23 6 0 3 152 chain 47375 chr1 249250621 + 115319296 115319863 L1PA6 6164 + 5577 6145 60916 128 0 2 296 7 14 8 7 0 80 1 0 40 chain 461241 chr1 249250621 + 115326316 115334793 L1PA8 5853 - 0 5803 8354 93 1 0 19 2 1 52 2 1 8 1 0 70 2 0 45 1 0 32 314 0 147 15 13 303 314 0 43 0 1 17 0 2 143 0 1 462 0 1 189 3 0 346 0 1 52 0 1 60 0 1 156 10 12 196 2 0 505 3 1 8 4 2 15 0 3 13 0 5 205 0 4 139 0 1 116 4 0 166 12 11 110 0 1 155 5 7 250 0 1 21 0 2 427 0 4 6 4 0 45 388 24 30 0 1 224 0 4 225 0 1 14 1649 0 36 1 5 106 0 1 189 12 0 121 0 1 72 49 13 13 1 0 11 2 0 21 chain 22121 chr1 249250621 + 115331700 115331982 AluSp 311 - 29 310 119694 140 11 10 131 chain 138885 chr1 249250621 + 115332583 115334137 SVA_D 2077 - 0 2077 26334 655 0 403 29 0 82 182 10 47 7 0 1 671 chain 136052 chr1 249250621 + 115346450 115347981 SVA_C 1631 - 3 1610 26822 310 0 1 299 1 0 18 1 45 32 0 1 18 10 1 78 0 40 764 chain 20564 chr1 249250621 + 115365787 115366089 MER4A1 472 + 0 301 125419 235 37 36 30 chain 10832 chr1 249250621 + 115366089 115366211 MER11B 1079 + 0 122 156856 122 chain 82742 chr1 249250621 + 115366467 115367415 MER11C 1089 + 125 1073 42441 948 chain 128868 chr1 249250621 + 115372498 115374425 MER61-int 3695 - 1827 3695 28343 46 0 9 337 0 3 39 1 0 9 0 1 112 14 8 346 1 3 47 4 3 51 27 25 15 11 14 163 1 0 57 13 11 157 15 1 46 0 1 32 3 0 5 5 1 54 2 1 39 0 8 31 39 0 117 0 1 4 1 0 5 4 5 11 1 0 20 14 2 28 chain 6839 chr1 249250621 + 115389897 115390041 L1MA3 4352 + 4220 4352 178660 15 4 0 25 1 0 22 1 0 6 1 0 20 7 6 14 1 0 4 6 3 17 chain 26624 chr1 249250621 + 115406416 115406753 L1PA8 5853 + 5517 5847 97577 47 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 87 chain 13090 chr1 249250621 + 115407486 115407625 L1PA3long 6157 - 0 139 147883 139 chain 11972 chr1 249250621 + 115412232 115412424 Tigger4a 237 + 26 234 152317 12 7 30 109 1 0 15 13 7 35 chain 100359 chr1 249250621 + 115431336 115432502 L1PA6 6164 - 8 1177 36670 262 2 1 339 0 3 231 0 1 332 chain 249730 chr1 249250621 + 115439747 115443736 MER61-int 3695 - 8 3694 16270 35 6 0 146 1 0 3 4 0 60 16 14 50 0 1 5 1 0 21 1 0 9 1 0 197 2 0 90 11 29 6 1 0 9 0 4 7 10 5 9 3 0 5 3 6 20 53 51 15 3 4 15 4 0 101 0 5 73 0 9 73 1 0 299 1 0 173 1 0 262 0 1 49 22 23 12 3 1 122 0 1 169 0 2 84 0 5 103 0 2 147 6 7 20 0 8 18 0 2 146 0 2 22 1 0 75 2 0 47 10 11 15 15 33 136 9 12 103 3 2 6 303 0 17 0 1 61 15 1 85 7 0 44 7 21 67 39 0 108 19 20 19 1 0 14 13 12 19 chain 3784 chr1 249250621 + 115455189 115455229 L1PA4 6152 - 14 54 210601 40 chain 525501 chr1 249250621 + 115475057 115481179 L1PA5 6144 + 0 6144 4626 120 0 14 341 0 6 451 0 1 4 1 0 232 9 0 157 7 3 157 3 0 297 0 2 471 7 9 138 0 1 480 0 1 260 2 6 18 1 0 289 6 8 873 1 9 141 1 2 803 1 0 592 1 0 258 chain 12060 chr1 249250621 + 115488407 115488540 L1PA5 6144 - 4 137 151945 133 chain 12541 chr1 249250621 + 115490539 115490680 L1PA4 6152 - 9 150 150076 141 chain 20714 chr1 249250621 + 115495030 115495379 THE1C 375 - 0 349 124922 24 2 1 119 4 7 22 7 4 11 0 1 47 1 5 9 3 0 35 15 0 7 5 19 38 chain 20414 chr1 249250621 + 115503088 115503338 L1MA3 4352 - 659 921 125110 27 1 13 222 chain 179972 chr1 249250621 + 115503338 115505987 L1PBa 3878 - 553 2891 20994 104 3 0 111 0 3 56 0 2 14 3 1 123 0 2 6 3 1 22 0 4 71 0 5 96 0 4 400 0 1 231 1 0 7 317 0 265 11 6 36 1 0 132 1 0 8 1 0 331 1 0 87 0 1 148 0 1 59 chain 518423 chr1 249250621 + 115505997 115512694 L1PA7 6471 - 1 6440 5334 160 1 2 605 2 3 82 1 0 255 2 1 14 1 0 227 1 12 37 0 1 92 0 1 300 0 4 63 0 2 408 3 5 67 0 10 195 1 4 417 1 0 343 330 0 94 0 1 294 1 3 132 9 1 384 0 1 26 0 1 10 5 7 441 0 1 153 7 10 762 13 54 171 5 0 200 1 2 28 17 17 196 4 5 4 1 0 131 chain 296545 chr1 249250621 + 115548654 115552260 HERVL-int 5654 - 0 3614 13615 130 0 1 37 0 3 66 0 3 551 1 0 591 5 3 874 0 2 23 12 15 175 3 0 544 0 1 104 0 1 170 2 1 4 0 1 314 chain 13228 chr1 249250621 + 115553494 115553654 HERVL-int 5654 + 1886 2046 147362 160 chain 5882 chr1 249250621 + 115553659 115553734 MSTA 426 + 351 426 186352 75 chain 533979 chr1 249250621 + 115556672 115562810 L1PA4 6152 - 1 6149 3705 4856 7 33 15 2 1 408 23 26 6 3 0 93 19 5 128 1 0 577 chain 2765 chr1 249250621 + 115568841 115568882 L1ME1 1623 - 815 854 229234 26 2 0 13 chain 27973 chr1 249250621 + 115568900 115569198 AluYa5 310 - 12 310 93104 298 chain 5516 chr1 249250621 + 115571168 115571649 L1PREC2 3366 + 2928 3218 189885 24 3 0 5 28 14 35 6 4 23 265 108 14 56 41 22 chain 9254 chr1 249250621 + 115601712 115601886 L1PB1 5432 + 5266 5419 164292 14 1 0 16 2 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 28897 chr1 249250621 + 115639546 115639912 L1PREC2 3366 + 2044 2409 89464 192 1 0 173 chain 5893 chr1 249250621 + 115648197 115648267 MLT2B4 540 - 470 540 186249 70 chain 37885 chr1 249250621 + 115660025 115660602 MER4B 649 + 0 641 72302 30 3 0 65 2 1 61 0 42 30 5 16 71 34 53 55 1 0 84 2 1 53 1 0 71 1 0 8 chain 552607 chr1 249250621 + 115690442 115696459 L1PA2 6032 + 12 6028 1119 244 2 0 501 3 0 1865 3 5 433 0 1 2953 0 1 13 chain 3667 chr1 249250621 + 115720855 115721038 Kanga2_a 737 + 389 578 212447 30 123 129 30 chain 3066 chr1 249250621 + 115745972 115746008 MADE1 96 + 1 37 223640 36 chain 14625 chr1 249250621 + 115751085 115751292 MER30 238 - 5 219 142506 43 3 0 52 0 14 17 4 0 88 chain 38583 chr1 249250621 + 115780032 115780514 LTR10F 562 - 0 562 71317 284 1 0 24 0 87 20 6 0 147 chain 25247 chr1 249250621 + 115796898 115797168 AluYa5 310 + 41 310 103491 91 1 0 178 chain 19453 chr1 249250621 + 115852055 115852290 L1PA7 6471 - 7 243 128810 41 0 1 194 chain 148955 chr1 249250621 + 115901360 115905789 L1P2 5180 + 1407 3232 24764 327 0 4 33 0 1 64 2601 0 325 2 0 76 5 0 983 1 0 12 chain 97589 chr1 249250621 + 115901980 115903723 SVA_A 1864 - 215 1434 37399 91 0 1 4 1 0 309 40 0 20 113 0 17 3 0 39 3 0 23 1 0 18 34 0 27 39 0 84 59 0 22 34 0 44 2 0 63 1 0 124 0 2 36 194 0 103 3 0 192 chain 5570 chr1 249250621 + 115902445 115902553 SVA_A 1864 - 603 709 51646 51 13 11 44 chain 3043 chr1 249250621 + 115902846 115902905 SVA_A 1864 - 922 959 51646 33 22 0 4 chain 6035 chr1 249250621 + 115903231 115903348 SVA_A 1864 - 1250 1367 51646 117 chain 1936 chr1 249250621 + 115903383 115903425 SVA_A 1864 - 951 989 72911 26 4 0 12 chain 32311 chr1 249250621 + 115903983 115904384 LTR12C 1709 - 0 416 80350 77 6 5 66 1 0 110 0 18 135 1 0 5 chain 6517 chr1 249250621 + 115910243 115910510 L1MD2 1676 - 20 295 181103 33 143 166 7 14 0 9 1 0 60 chain 55378 chr1 249250621 + 115921579 115922464 L1PB1 5432 - 17 853 55473 11 1 0 13 1 0 21 1 0 24 2 0 14 12 9 15 40 27 45 1 0 17 1 0 49 0 4 7 2 0 3 2 0 12 1 0 6 1 0 24 56 20 50 0 7 43 0 3 37 0 1 327 1 2 45 chain 510526 chr1 249250621 + 115925965 115932092 L1PA6 6164 - 4 6164 6119 151 0 1 207 0 6 171 22 6 1864 0 1 173 1 2 102 4 5 67 1 34 145 9 2 33 0 1 815 0 1 39 0 2 116 1 3 477 6 4 68 0 13 103 0 1 258 0 7 269 0 1 691 13 0 321 chain 13985 chr1 249250621 + 115936680 115936846 AluYc 301 + 128 294 144626 166 chain 25235 chr1 249250621 + 115961552 115961838 L1PA4 6152 + 5866 6151 103563 137 1 0 148 chain 21277 chr1 249250621 + 115975709 115976064 THE1A 353 + 0 353 122935 15 9 7 22 20 21 29 1 0 17 0 2 6 17 15 199 0 2 8 2 0 10 chain 44498 chr1 249250621 + 115982011 115982506 L1PA5 6144 - 9 504 63582 495 chain 15679 chr1 249250621 + 115982510 115982684 L1PA5 6144 + 5437 5611 139334 174 chain 3768 chr1 249250621 + 116001015 116001117 MER5C1 258 - 78 144 210847 30 47 11 25 chain 4494 chr1 249250621 + 116020564 116020683 MER3 215 + 54 195 200846 36 5 65 8 3 0 13 35 0 19 chain 22168 chr1 249250621 + 116026793 116027063 AluSp 311 + 28 298 119504 270 chain 4299 chr1 249250621 + 116028273 116028320 MADE1 96 - 0 47 203219 47 chain 113656 chr1 249250621 + 116045187 116046692 THE1C-int 1605 + 18 1596 33187 78 0 57 17 3 0 157 0 6 102 11 18 70 13 14 119 1 0 4 0 1 31 15 16 656 0 3 32 0 1 196 chain 160134 chr1 249250621 + 116054496 116057020 HERVH-int 3825 - 0 2354 23322 111 0 11 522 0 1 15 6 7 143 1 0 40 164 0 173 11 0 154 20 7 139 37 41 42 6 5 5 0 1 118 1 0 5 5 6 48 5 6 131 18 18 72 50 49 98 79 83 86 6 5 73 28 27 112 chain 62531 chr1 249250621 + 116070583 116071297 LTR30 714 - 0 714 51665 714 chain 43959 chr1 249250621 + 116076352 116076988 PABL_B 668 - 13 668 64253 164 0 7 82 0 3 6 4 1 14 0 4 27 1 0 53 0 10 6 2 1 109 16 17 13 10 8 105 5 6 19 chain 27569 chr1 249250621 + 116082600 116082953 THE1A 353 - 0 353 94435 220 0 1 22 5 4 106 chain 367457 chr1 249250621 + 116120867 116125257 L1PA6 6164 - 8 4435 11169 118 0 3 378 0 2 26 1 2 455 0 5 360 3 1 440 9 13 87 0 1 369 0 1 371 0 1 337 1 0 26 1 0 826 0 2 104 1 2 9 0 4 172 0 16 296 chain 3695 chr1 249250621 + 116139957 116140006 ERVL-int 1947 - 169 215 212016 17 3 0 29 chain 86401 chr1 249250621 + 116144503 116145431 L1PA3long 6157 - 490 1419 41004 652 0 1 276 chain 44387 chr1 249250621 + 116145431 116145958 L1PA3long 6157 + 5666 6157 63705 440 36 0 51 chain 122498 chr1 249250621 + 116168355 116169699 L1PA2 6032 - 3 1347 30220 852 1 4 483 3 0 5 chain 64588 chr1 249250621 + 116169699 116170389 L1PA2 6032 + 4011 4701 50367 690 chain 539291 chr1 249250621 + 116176121 116182550 L1PA7 6471 - 22 6468 2930 117 1 15 7 15 0 163 0 1 262 0 1 259 0 3 220 0 1 327 4 0 46 0 7 185 0 1 105 0 1 1205 4 1 19 0 1 92 0 2 304 0 4 452 2 3 4 0 1 307 1 0 304 1 0 270 0 1 316 2 1 326 3 5 701 22 23 383 chain 17275 chr1 249250621 + 116212055 116212412 THE1B 368 + 14 368 134849 95 115 105 18 0 8 66 7 6 56 chain 3639 chr1 249250621 + 116216571 116216613 MLT1C 463 - 361 403 212986 42 chain 57114 chr1 249250621 + 116321585 116322283 L1PA6 6164 - 2 702 54459 9 0 2 137 5 0 6 1 6 540 chain 99345 chr1 249250621 + 116322298 116323450 L1PA6 6164 + 4327 5477 36942 352 13 11 787 chain 64457 chr1 249250621 + 116326827 116327536 L1PA2 6032 + 5316 6028 50818 428 0 3 134 0 1 130 1 0 16 chain 4095 chr1 249250621 + 116350896 116350942 MER20 218 + 161 207 206008 46 chain 6473 chr1 249250621 + 116393612 116393790 L1MCc 1008 - 562 720 181446 13 1 0 13 75 55 4 0 1 72 chain 11158 chr1 249250621 + 116416423 116416558 MER41B 635 - 0 134 155604 100 1 0 34 chain 3949 chr1 249250621 + 116470391 116470452 MER3 215 - 32 95 208139 23 3 5 35 chain 29299 chr1 249250621 + 116471116 116471422 AluYa5 310 - 4 310 87582 306 chain 399200 chr1 249250621 + 116504754 116510684 L1PB1 5432 + 19 5404 10130 344 12 22 197 6 2 7 0 4 88 0 1 40 13 8 7 0 11 6 6 0 121 0 1 383 8 9 125 1 0 6 16 1 24 2 1 163 27 26 39 0 1 410 4 7 298 7 8 71 4 2 41 3 0 333 228 0 168 0 1 153 0 12 44 0 1 458 0 3 44 12 14 390 0 1 284 0 2 224 1 3 50 9 8 10 1 0 8 1 3 7 296 0 170 14 7 212 1 0 9 7 6 20 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 3 0 11 9 0 16 1 0 4 3 1 13 3 1 24 1 0 21 1 0 13 chain 23348 chr1 249250621 + 116509663 116509953 AluY 311 + 29 311 113928 240 9 1 41 chain 26111 chr1 249250621 + 116570250 116570544 AluSp 311 - 16 310 99573 294 chain 126488 chr1 249250621 + 116590385 116594325 L1PB1 5432 + 479 4458 11276 17 3 10 10 0 1 4 5 4 518 2 1 184 0 2 172 11 0 158 0 1 19 1 0 75 0 1 31 0 2 185 1 0 42 0 2 567 20 19 78 0 3 128 1 0 129 1 0 42 11 14 271 0 4 107 0 11 73 0 7 185 1 0 5 1 2 146 12 16 154 0 8 412 0 1 158 chain 553553 chr1 249250621 + 116594540 116600673 L1PA3long 6157 + 4 6142 998 308 4 11 293 11 4 547 0 3 1427 1 0 194 1 3 1607 0 1 1740 chain 31397 chr1 249250621 + 116600729 116601707 L1PB1 5432 + 4458 5413 11276 163 2 0 68 14 16 131 6 5 255 18 18 24 1 0 8 1 0 10 6 2 9 2 0 33 0 1 19 2 1 16 1 0 44 1 0 15 21 17 14 11 8 11 2 0 24 1 0 21 1 0 13 1 0 9 chain 6765 chr1 249250621 + 116628334 116628476 L1PB3 3668 - 55 186 179204 14 7 4 13 1 0 13 7 3 37 3 1 24 4 3 19 chain 21798 chr1 249250621 + 116644245 116644502 L1PA7 6471 - 10 268 121026 154 0 1 103 chain 15853 chr1 249250621 + 116669468 116669721 MER47A 366 + 75 365 138795 37 0 26 148 3 20 12 31 25 22 chain 111873 chr1 249250621 + 116677642 116678961 L1PA3long 6157 + 3037 4357 33699 534 86 86 289 0 1 410 chain 162882 chr1 249250621 + 116678961 116680741 L1PA3long 6157 + 4361 6144 22952 1029 0 1 337 0 2 414 chain 133005 chr1 249250621 + 116688191 116689741 LTR12C 1709 - 0 1709 27417 481 0 4 106 3 160 121 1 0 345 2 1 491 chain 120533 chr1 249250621 + 116730561 116732222 L1MA3 4352 - 405 2109 30866 47 0 1 82 1 2 182 0 23 127 9 8 5 0 1 66 6 7 254 1 0 160 0 2 128 11 21 104 5 4 136 1 0 75 2 0 10 0 1 28 11 14 38 6 9 42 0 4 53 1 0 70 chain 27686 chr1 249250621 + 116754884 116755309 L1PA8 5853 + 5407 5843 94093 157 9 8 38 2 0 67 26 42 21 2 1 15 11 10 77 chain 242241 chr1 249250621 + 116756356 116759014 L1PA3long 6157 + 3492 6157 16658 1960 0 7 698 chain 17438 chr1 249250621 + 116778665 116778980 L1PB3 3668 - 103 378 134411 36 3 1 14 2 1 9 5 3 19 45 11 80 1 0 101 chain 16390 chr1 249250621 + 116808544 116808744 MER107 203 - 5 200 137238 38 5 0 157 chain 8911 chr1 249250621 + 116826928 116827163 L1M1 2793 - 197 432 166079 78 66 68 11 2 0 18 2 0 5 18 20 35 chain 6095 chr1 249250621 + 116843590 116843693 L1MB8 1703 - 128 230 184454 58 18 17 27 chain 15545 chr1 249250621 + 116866534 116866735 Tigger3d 321 - 71 277 139747 58 1 3 134 0 3 8 chain 8577 chr1 249250621 + 116928161 116928327 MER21A 919 + 2 177 167866 79 41 52 16 1 0 8 1 0 20 chain 7013 chr1 249250621 + 116950292 116950440 MER5A 189 + 5 168 177372 13 2 5 52 4 12 22 10 12 13 12 14 20 chain 3163 chr1 249250621 + 116990594 116990635 Tigger3b 1229 - 187 227 221701 28 1 0 12 chain 6272 chr1 249250621 + 116995161 116995257 HY3 101 + 10 100 182986 11 10 4 75 chain 8459 chr1 249250621 + 117006227 117006385 MER53 195 - 0 195 168520 25 30 64 30 1 5 5 1 0 66 chain 4039 chr1 249250621 + 117028401 117028447 MER63B 433 + 328 374 206801 46 chain 25180 chr1 249250621 + 117079049 117079395 THE1D 372 + 0 360 103848 101 2 1 5 0 1 36 13 14 21 0 13 168 chain 68879 chr1 249250621 + 117089646 117091134 L1PB1 5432 - 6 1168 48862 8 1 0 14 1 0 12 1 0 7 44 43 10 1 0 5 3 1 18 24 12 15 1 0 13 0 14 18 8 7 5 0 2 54 2 0 9 5 1 12 335 24 4 0 1 14 5 0 83 28 16 85 12 24 58 9 7 204 3 0 147 0 4 60 3 4 147 chain 5751 chr1 249250621 + 117102730 117102804 MER33 330 + 166 240 187630 74 chain 115157 chr1 249250621 + 117105486 117107069 THE1B-int 1605 - 0 1605 32731 9 0 1 37 1 0 62 4 5 191 2 0 58 20 26 396 0 9 56 6 0 192 1 0 59 4 1 5 0 3 44 35 18 195 2 0 21 4 36 5 0 1 157 4 5 13 chain 170185 chr1 249250621 + 117260546 117262353 L1HS 6032 + 4225 6032 22027 1807 chain 4354 chr1 249250621 + 117292471 117292522 MER34C_ 573 + 251 302 202538 51 chain 6263 chr1 249250621 + 117304766 117304909 MER53 195 + 0 195 183061 33 52 104 58 chain 13978 chr1 249250621 + 117320572 117320785 MER82 654 - 399 607 144659 120 25 18 50 0 2 18 chain 263342 chr1 249250621 + 117329908 117333931 L1PB1 5432 + 1686 5404 15516 287 1 0 28 27 10 76 12 10 328 6 0 9 21 27 33 1 0 16 9 10 138 0 2 128 0 5 49 1 0 12 32 35 246 0 1 580 7 10 90 344 57 105 0 3 13 0 3 624 0 1 470 10 22 20 1 0 12 1 0 10 7 3 9 2 0 52 2 1 9 8 7 43 1 0 16 2 0 6 16 6 18 11 8 12 2 0 24 1 0 22 2 1 11 chain 5948 chr1 249250621 + 117337591 117337678 LTR38B 592 + 492 578 185701 69 6 5 12 chain 29745 chr1 249250621 + 117346203 117346603 MER1A 529 + 135 528 85675 235 2 1 92 14 8 57 chain 22129 chr1 249250621 + 117363943 117364239 MER1B 344 + 45 344 119667 171 4 0 52 17 24 52 chain 26226 chr1 249250621 + 117379055 117379736 THE1B 368 + 0 368 99108 41 1 16 44 0 1 61 328 0 13 1 0 192 chain 116216 chr1 249250621 + 117379778 117381312 THE1B-int 1605 + 42 1599 32369 220 6 8 58 0 6 96 0 25 24 16 16 220 2 0 6 0 2 489 35 26 166 1 0 195 chain 28085 chr1 249250621 + 117381317 117381667 THE1B 368 + 0 368 92696 44 0 15 113 1 0 29 0 4 163 chain 37175 chr1 249250621 + 117385928 117386471 MLT2A2 560 + 0 560 73276 142 1 2 55 66 67 179 0 10 72 0 5 28 chain 22812 chr1 249250621 + 117391074 117391380 AluSp 311 + 0 298 116520 21 1 0 242 0 11 14 18 0 10 chain 37638 chr1 249250621 + 117393709 117394137 L1PA5 6144 - 15 443 72637 428 chain 35173 chr1 249250621 + 117401648 117402085 MER41A 554 + 0 441 75950 19 0 2 144 0 4 231 3 0 27 0 1 13 chain 31897 chr1 249250621 + 117402800 117403256 LTR7 482 - 8 482 81016 33 7 0 57 0 2 86 0 31 15 6 0 43 0 4 88 21 15 100 chain 32454 chr1 249250621 + 117404968 117405418 LTR7B 505 + 0 490 80105 108 0 10 57 0 38 12 35 27 26 0 2 85 1 0 76 14 13 36 chain 230609 chr1 249250621 + 117405976 117409141 HERVH-int 3825 + 809 3824 17278 362 1 4 48 15 0 207 9 0 104 7 12 56 0 1 4 1 0 167 2 1 80 0 30 61 8 12 91 48 53 306 0 1 5 1 7 223 1 0 156 14 0 172 165 0 43 1 0 77 0 3 378 1 0 351 chain 2868 chr1 249250621 + 117441008 117441110 L1ME1 1623 + 1379 1477 227549 15 3 4 19 44 39 21 chain 27106 chr1 249250621 + 117480902 117481256 THE1B 368 - 2 366 95922 73 1 0 98 3 0 29 1 0 112 0 15 37 chain 102816 chr1 249250621 + 117481263 117482688 THE1B-int 1605 - 5 1489 36051 393 1 0 174 1 0 4 5 6 26 2 1 62 2 3 20 0 3 116 25 27 12 0 13 28 53 59 91 1 0 70 0 3 33 1 26 223 14 23 68 chain 4028 chr1 249250621 + 117505004 117505066 5S 121 - 31 83 206955 44 10 0 8 chain 542415 chr1 249250621 + 117517367 117523478 L1PA5 6144 + 0 6135 2442 799 0 1 1504 0 1 208 0 1 199 10 6 55 0 4 37 0 1 360 1 0 370 0 1 705 0 3 1016 0 4 16 0 4 340 0 7 74 0 2 417 chain 16996 chr1 249250621 + 117535512 117535831 L1PB1 5432 + 5134 5423 135606 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 34 1 0 15 1 0 4 chain 25368 chr1 249250621 + 117543481 117543770 L1PA5 6144 + 5846 6135 102840 289 chain 23401 chr1 249250621 + 117610889 117611176 L1PA5 6144 + 5857 6144 113640 287 chain 5443 chr1 249250621 + 117675400 117675477 MER33 330 + 123 199 190580 31 1 0 45 chain 38040 chr1 249250621 + 117693837 117694346 LTR12_ 688 - 73 678 72077 61 11 106 352 0 2 69 1 0 15 chain 23836 chr1 249250621 + 117699927 117700280 THE1A 353 - 0 353 111275 151 1 0 68 16 15 6 0 2 17 5 4 35 10 11 44 chain 120171 chr1 249250621 + 117700280 117701825 THE1A-int 1579 - 0 1579 30999 284 2 20 18 0 1 234 14 15 235 24 35 78 20 23 636 chain 56698 chr1 249250621 + 117713474 117714175 L1PA8 5853 - 0 697 54721 93 1 0 19 2 1 7 0 4 34 2 0 16 2 1 70 2 0 46 1 0 406 chain 34022 chr1 249250621 + 117715339 117715881 LTR12_ 688 + 0 688 77590 25 12 10 25 1 5 15 0 66 21 1 0 7 41 0 245 0 1 14 15 0 47 0 133 7 0 1 66 chain 4790 chr1 249250621 + 117715932 117715984 MLT1C 463 + 135 187 197462 52 chain 15408 chr1 249250621 + 117735536 117735867 MER2 342 + 13 342 140170 36 71 84 82 5 6 67 31 15 39 chain 28593 chr1 249250621 + 117758101 117758408 AluYa5 310 - 4 310 90771 180 1 0 126 chain 541932 chr1 249250621 + 117760217 117766376 L1PA4 6152 + 1 6143 2517 872 0 1 4 1 0 160 4 5 104 21 1 2216 2 1 143 0 1 218 0 1 113 0 1 2301 chain 18241 chr1 249250621 + 117776610 117776832 THE1C 375 - 2 223 132229 24 1 0 197 chain 22071 chr1 249250621 + 117800343 117800716 THE1C 375 - 2 375 119920 159 40 37 24 11 15 29 2 0 18 13 0 8 0 14 69 chain 20975 chr1 249250621 + 117802285 117802615 THE1C 375 - 40 375 124012 182 65 70 83 chain 14762 chr1 249250621 + 117804325 117804509 L1PA6 6164 - 3 185 142059 7 3 0 76 0 1 98 chain 59745 chr1 249250621 + 117842796 117843466 SVA_B 1603 - 0 707 52966 6 3 0 582 1 0 25 0 41 53 chain 186235 chr1 249250621 + 117857449 117859531 L1PA4 6152 - 12 2099 20399 248 1 0 101 0 1 225 0 1 1212 0 4 295 chain 18301 chr1 249250621 + 117859531 117859735 L1PA4 6152 + 3487 3691 132071 204 chain 30533 chr1 249250621 + 117859735 117860091 L1PA4 6152 + 3693 4048 83366 255 1 0 100 chain 3957 chr1 249250621 + 117863337 117863382 MIR 256 + 69 114 208016 45 chain 8226 chr1 249250621 + 117880580 117880694 LTR12B 2670 + 2064 2170 169804 24 8 0 82 chain 554091 chr1 249250621 + 117895184 117901346 L1PA3long 6157 - 0 6157 936 15 11 8 2189 0 1 1533 0 3 1695 7 0 532 1 2 179 chain 150791 chr1 249250621 + 117923818 117925475 L1PA3long 6157 - 8 1671 24502 134 0 1 700 0 4 245 0 1 578 chain 166585 chr1 249250621 + 117971418 117973809 SVA_F 1814 - 0 1803 22449 10 2 0 591 100 0 202 1 0 10 1 0 39 498 14 937 chain 8486 chr1 249250621 + 117972021 117972121 SVA_F 1814 - 777 890 128867 26 1 0 17 1 0 32 0 15 23 chain 14223 chr1 249250621 + 117972374 117972598 SVA_F 1814 - 676 803 115689 32 98 0 73 1 2 20 chain 8370 chr1 249250621 + 117972598 117972686 SVA_F 1814 - 627 715 159270 88 chain 12303 chr1 249250621 + 117972737 117972872 SVA_F 1814 - 540 675 137194 135 chain 116447 chr1 249250621 + 117992604 117994138 THE1B-int 1605 + 8 1600 32295 48 0 1 34 2 16 323 1 26 207 0 1 47 1 4 106 0 9 125 12 8 171 3 7 33 2 1 168 0 1 175 0 5 76 chain 22113 chr1 249250621 + 118010657 118010922 THE1C 375 - 0 265 119731 265 chain 141432 chr1 249250621 + 118017992 118019669 L1PA7 6471 - 5 1689 25914 7 4 0 27 1 2 9 0 3 794 0 3 15 0 4 820 chain 87357 chr1 249250621 + 118019669 118020732 L1PA7 6471 + 3719 4785 40560 94 8 12 71 4 0 41 2 1 410 0 3 167 0 2 165 1 0 100 chain 7811 chr1 249250621 + 118022221 118022331 L1PA11 4918 - 401 507 172245 10 4 0 19 0 2 14 2 0 61 chain 151331 chr1 249250621 + 118024708 118026547 L1PA6 6164 - 22 2190 24424 21 0 1 6 1 0 64 10 354 319 34 9 52 0 3 218 0 1 267 0 1 608 0 2 16 0 3 223 chain 4522 chr1 249250621 + 118055878 118055930 L1MB2 1706 + 1642 1694 200531 52 chain 262027 chr1 249250621 + 118061177 118064790 L1PB1 5432 + 1682 5419 15583 22 0 2 840 0 4 37 0 3 7 0 10 7 16 6 173 1 0 49 2 1 201 1 2 154 0 6 59 2 1 60 7 8 96 14 15 30 0 4 254 2 0 63 0 1 37 0 2 128 0 1 104 3 4 128 1 5 129 0 5 210 17 147 6 0 2 343 10 5 50 1 2 9 3 0 24 1 0 4 21 16 11 2 0 43 1 0 8 2 1 16 1 0 44 1 0 15 3 0 17 51 37 19 2 1 21 1 0 13 1 0 15 chain 5006 chr1 249250621 + 118074848 118074929 MER20 218 + 36 115 195063 55 6 5 15 1 0 4 chain 20036 chr1 249250621 + 118091051 118091260 AluYa5 310 + 91 300 127024 209 chain 7010 chr1 249250621 + 118094746 118094837 L1PB4 2604 - 226 319 177393 10 0 2 81 chain 76360 chr1 249250621 + 118097051 118097956 L1PA7 6471 - 10 918 45284 152 6 5 314 0 3 85 1 2 279 1 0 33 0 1 34 chain 119630 chr1 249250621 + 118100856 118102510 THE1B-int 1605 - 6 1605 31167 118 3 7 441 1 0 4 2 1 5 0 13 491 15 15 23 8 6 10 19 35 189 84 0 90 0 1 116 2 1 33 chain 5775 chr1 249250621 + 118102185 118102253 THE1B-int 1605 - 1367 1435 187389 68 chain 26701 chr1 249250621 + 118191302 118191613 L1PA5 6144 + 5833 6144 97317 311 chain 136989 chr1 249250621 + 118247297 118248850 L1PA4 6152 - 9 1564 26643 71 0 2 1482 chain 6249 chr1 249250621 + 118252374 118252479 MER53 195 - 89 195 183173 25 18 19 62 chain 25997 chr1 249250621 + 118258673 118259027 THE1B 368 + 0 368 100029 44 0 15 14 0 1 33 0 16 53 1 0 89 15 1 25 3 0 77 chain 122867 chr1 249250621 + 118259027 118260602 THE1B-int 1605 + 0 1605 30088 423 32 58 130 16 17 587 0 1 120 0 1 32 11 12 224 chain 26812 chr1 249250621 + 118260604 118260959 THE1B 368 + 2 368 96933 42 0 15 116 1 0 116 3 0 77 chain 38329 chr1 249250621 + 118261091 118261544 L1PA5 6144 - 9 465 71682 136 1 0 4 0 3 165 0 1 147 chain 123538 chr1 249250621 + 118261560 118263295 L1PBa 3878 + 187 1928 29734 26 1 0 8 18 16 121 17 11 6 0 7 140 1 0 14 0 1 45 6 5 376 5 9 8 1 0 14 0 4 60 9 14 97 0 1 376 0 1 4 1 0 54 10 8 135 6 5 131 1 0 44 chain 536666 chr1 249250621 + 118263295 118269454 L1PA4 6152 + 0 6152 3357 315 2 1 50 16 18 81 0 3 107 0 3 55 0 2 199 17 0 313 10 11 306 0 1 3860 2 1 826 chain 267290 chr1 249250621 + 118269476 118273207 L1PB1 5432 + 1704 5422 15326 144 1 0 371 6 8 40 0 3 229 2 0 47 0 4 68 11 7 60 6 1 121 4 0 35 1 0 49 0 3 165 13 4 118 0 23 36 1 2 122 1 0 3 0 9 102 17 17 241 7 1 153 0 1 730 3 0 35 0 6 152 0 1 180 2 1 5 0 1 92 72 65 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 5 17 7 18 3 1 5 1 0 14 8 6 12 0 1 5 1 0 21 1 0 13 1 0 18 chain 395352 chr1 249250621 + 118283996 118289413 L1PB1 5432 - 12 5413 10262 16 1 0 13 1 0 21 1 0 24 2 0 9 50 37 4 1 0 15 1 0 60 3 1 53 2 0 9 6 2 9 1 0 9 1 0 23 5 0 8 9 11 80 18 12 198 1 9 89 0 2 45 0 4 34 0 2 31 0 1 58 0 4 359 10 14 415 24 17 53 7 11 204 58 26 927 1 2 52 21 0 41 4 2 80 1 2 176 0 52 244 0 4 53 9 7 222 0 2 131 1 3 18 1 6 177 2 1 128 0 3 122 4 3 279 11 4 133 6 2 267 7 8 258 chain 28164 chr1 249250621 + 118291004 118291408 MSTA 426 + 0 408 92414 26 0 1 94 19 18 59 1 0 8 2 8 30 1 0 164 chain 517261 chr1 249250621 + 118306608 118312717 L1PA6 6164 - 8 6164 5457 139 1 2 703 0 4 1344 0 1 8 2 3 85 0 2 168 1 0 3 3 0 462 0 1 41 0 1 80 0 4 414 0 1 93 11 15 255 0 2 208 1 4 76 1 0 1130 0 4 79 0 17 124 0 1 359 1 5 128 0 1 189 chain 5257 chr1 249250621 + 118365385 118365463 MER5C1 258 - 39 112 192440 6 5 0 67 chain 96433 chr1 249250621 + 118373632 118374719 L1PA4 6152 - 9 1092 37696 121 9 1 719 0 4 238 chain 171251 chr1 249250621 + 118386428 118389181 L1PA13 3608 + 90 2509 21909 14 11 9 25 2 0 10 1 0 15 1 0 14 3 0 23 30 18 70 1 0 4 2 1 96 11 12 15 1 0 12 2 1 16 2 0 16 15 11 9 1 0 17 6 4 14 2 0 16 1 0 99 2 0 450 0 3 22 2 1 32 2 3 103 23 21 9 0 2 5 0 1 111 2 0 7 0 2 153 8 7 86 305 0 114 1 0 179 1 0 15 1 5 62 0 3 156 1 2 228 1 2 4 1 0 90 chain 68546 chr1 249250621 + 118465087 118466135 MER11B 1079 - 6 1079 49014 23 12 1 18 0 1 204 74 88 13 7 31 99 0 1 56 1 2 12 0 1 15 24 12 22 18 17 71 0 2 154 0 5 225 chain 12881 chr1 249250621 + 118509992 118510180 MER30 238 - 0 202 148703 47 3 0 51 2 1 10 4 22 71 chain 23144 chr1 249250621 + 118525623 118525980 THE1B 368 - 0 368 114921 51 9 10 91 20 16 24 1 0 109 8 23 44 chain 510989 chr1 249250621 + 118541470 118547567 L1PA6 6164 - 8 6160 6072 31 0 5 106 5 6 131 0 1 327 0 2 130 0 1 94 0 4 396 0 1 541 0 1 75 0 1 510 1 2 48 2 3 534 2 0 16 0 1 865 1 0 562 0 1 70 0 2 92 0 1 145 9 18 350 0 3 212 0 20 281 1 0 21 12 12 14 0 2 95 0 1 49 2 3 202 1 0 164 chain 49654 chr1 249250621 + 118573052 118573693 L1PA8 5853 - 0 626 59270 69 8 0 21 5 4 18 2 1 43 5 4 14 2 1 68 2 0 48 1 0 335 chain 5052 chr1 249250621 + 118592143 118592207 L1MA8 2339 + 115 179 194609 64 chain 51561 chr1 249250621 + 118592375 118593071 MER50 708 + 0 686 57916 38 27 22 43 0 1 46 2 0 5 0 1 132 3 0 118 1 0 75 1 0 205 chain 154955 chr1 249250621 + 118605652 118607369 L1PA4 6152 + 4434 6151 23985 1717 chain 25571 chr1 249250621 + 118690853 118691311 LTR12_ 688 - 15 688 101871 36 1 0 10 12 253 52 66 65 61 24 0 196 chain 6929 chr1 249250621 + 118707949 118708088 LTR9 672 + 528 659 177967 5 1 0 20 1 0 5 25 19 45 0 1 25 1 0 11 chain 3288 chr1 249250621 + 118720786 118720823 MADE1 96 - 59 96 219221 37 chain 3132 chr1 249250621 + 118721344 118721383 L1MA4 2864 + 991 1037 222328 33 0 7 6 chain 30584 chr1 249250621 + 118729421 118729884 LTR12F 595 + 0 500 83237 57 0 4 42 0 1 37 6 4 32 0 8 21 0 9 35 1 25 82 7 8 25 1 0 19 4 5 37 8 0 10 0 1 5 1 0 33 chain 12162 chr1 249250621 + 118748442 118748680 Tigger3c 601 + 364 601 151567 106 6 5 43 36 35 14 12 13 21 chain 431609 chr1 249250621 + 118768735 118774019 HERV9-int 5642 + 9 5278 9282 41 0 1 378 0 5 6 6 1 258 22 0 17 6 0 34 0 3 20 0 1 73 6 4 261 1 0 5 0 2 5 4 1 86 0 2 37 0 1 366 2 1 100 7 8 738 1 0 16 0 2 5 11 9 877 0 1 483 0 5 75 0 2 1176 8 11 104 1 0 48 chain 41575 chr1 249250621 + 118775495 118776056 LTR12F 595 + 0 595 67193 79 2 1 24 6 41 32 0 8 25 14 5 154 0 1 225 chain 25636 chr1 249250621 + 118786038 118786380 LTR71B 605 + 0 346 101557 126 18 22 198 chain 549137 chr1 249250621 + 118823510 118829528 L1PA2 6032 + 5 6024 1563 67 0 1 695 4 0 2364 1 0 428 2 1 664 0 4 136 2 0 817 0 4 838 chain 34386 chr1 249250621 + 118836173 118836647 MLT2A1 477 - 0 470 77086 56 9 0 7 11 0 19 0 12 60 1 0 149 1 5 28 0 1 133 chain 158695 chr1 249250621 + 118855804 118857597 L1PA5 6144 + 4340 6135 23503 225 1 0 203 0 4 1209 1 6 6 2 0 5 4 0 137 chain 29605 chr1 249250621 + 118867652 118868068 MLT2A1 477 - 72 477 86199 27 2 0 170 19 13 26 5 2 167 chain 24087 chr1 249250621 + 118885529 118885817 AluSq10 312 + 10 298 109817 288 chain 484569 chr1 249250621 + 118891934 118897525 L1PA5 6144 + 16 6144 7572 73 0 525 398 0 1 402 0 5 1340 0 2 414 1 0 506 1 0 547 0 1 14 0 1 1565 0 2 101 6 8 223 chain 23903 chr1 249250621 + 118920004 118920378 THE1B 368 - 0 368 110898 176 2 0 10 58 54 128 chain 41722 chr1 249250621 + 118920378 118920939 MSTA-int 1630 + 1060 1625 66998 56 10 11 43 13 16 439 chain 353994 chr1 249250621 + 118947565 118951938 L1PA8 5853 + 1505 5853 11507 524 0 1 79 4 3 6 0 1 110 0 1 477 0 9 149 0 2 1342 0 1 160 1 0 213 0 1 298 40 10 118 3 1 166 1 3 196 1 0 186 1 0 48 2 0 68 2 1 13 2 1 47 2 1 13 8 7 38 1 0 54 chain 21495 chr1 249250621 + 118957856 118958123 AluSp 311 + 31 294 122161 101 2 0 149 3 1 12 chain 19161 chr1 249250621 + 118971733 118971970 L1PA5 6144 + 5901 6138 129644 237 chain 59863 chr1 249250621 + 118980867 118981539 L1PA5 6144 + 5216 5888 52890 672 chain 25539 chr1 249250621 + 118996774 118997087 THE1B-int 1605 - 5 319 102060 176 0 1 137 chain 60967 chr1 249250621 + 118999068 119000083 L1PB1 5432 + 4446 5422 52349 184 4 0 172 1 0 301 1 2 9 7 0 10 0 4 8 1 0 10 39 32 39 9 8 10 2 1 22 107 88 24 1 0 23 1 0 11 7 6 12 chain 10315 chr1 249250621 + 119008057 119008404 MSTA 426 + 0 392 159066 63 18 19 24 47 73 15 52 50 15 8 7 27 39 60 39 chain 6248 chr1 249250621 + 119015384 119015466 MER96B 391 - 258 341 183182 17 0 1 65 chain 56043 chr1 249250621 + 119018375 119019248 LTR12D 1347 + 405 1347 55094 68 78 0 62 2 33 82 1 0 44 0 17 23 0 1 83 1 2 32 1 0 170 4 0 14 23 22 24 0 102 106 0 1 4 1 2 50 chain 50954 chr1 249250621 + 119024630 119025497 L1PB1 5432 - 19 852 58338 9 1 0 13 1 0 21 1 0 16 70 54 4 1 0 16 1 0 14 7 8 21 1 0 16 2 1 53 37 29 23 5 0 8 2 5 287 4 3 156 0 1 20 10 8 47 chain 45591 chr1 249250621 + 119033211 119033756 MER41A 554 - 0 554 62417 81 0 5 19 0 3 353 0 1 92 chain 60933 chr1 249250621 + 119039487 119040164 L1PA5 6144 + 5460 6137 52373 677 chain 505128 chr1 249250621 + 119054420 119060543 L1PA6 6164 - 8 6164 6529 137 1 2 694 1 8 272 1 0 704 0 1 34 0 1 245 1 0 82 0 1 571 0 1 103 2 0 110 0 1 179 0 9 280 6 7 385 1 2 113 0 2 964 1 0 320 0 1 310 7 15 33 3 2 48 0 2 279 1 3 235 chain 218833 chr1 249250621 + 119062202 119064643 L1PA3long 6157 - 0 2439 17956 142 1 0 54 6 5 2238 chain 55012 chr1 249250621 + 119064643 119065257 L1PA3long 6157 + 3062 3676 55478 614 chain 427712 chr1 249250621 + 119085989 119091245 L1PA6 6164 + 851 6161 9357 403 9 8 755 0 1 109 0 1 85 0 2 111 2 3 32 0 2 678 0 1 131 0 1 15 0 1 76 2 5 34 1 0 225 4 1 321 0 1 25 1 0 62 1 0 31 0 2 205 2 3 196 6 38 187 6 20 684 3 0 6 5 8 123 0 1 710 3 0 7 chain 99776 chr1 249250621 + 119091988 119093673 L1PA14 3548 + 99 1497 36836 49 4 0 69 1 0 20 3 2 19 17 15 26 2 0 28 0 2 6 14 7 49 1 0 12 3 0 14 10 6 34 1 0 30 2 0 121 2 0 108 262 1 137 8 12 613 9 7 11 chain 52138 chr1 249250621 + 119093673 119094232 L1PA2 6032 - 263 822 56111 559 chain 23469 chr1 249250621 + 119094232 119094485 L1PA2 6032 + 5775 6028 113275 253 chain 538289 chr1 249250621 + 119110859 119116873 L1PA3long 6157 - 1 6157 3104 595 0 1 252 0 5 945 0 4 253 0 1 4 1 0 803 0 1 120 0 1 1931 0 2 334 0 128 61 1 0 560 1 2 153 chain 252592 chr1 249250621 + 119117970 119120720 L1PA2 6032 + 3262 6012 16099 2750 chain 5326 chr1 249250621 + 119177656 119177750 L1PB1 5432 + 281 374 191763 20 17 16 57 chain 539370 chr1 249250621 + 119180376 119186537 L1PA4 6152 + 1 6152 2914 1035 1 0 136 1 4 727 1 0 1934 0 7 6 24 2 86 0 1 419 0 2 940 0 1 851 chain 41962 chr1 249250621 + 119190305 119190890 LTR12 884 + 4 884 66670 21 1 0 49 0 132 134 4 5 20 0 22 248 0 3 39 17 155 52 chain 117214 chr1 249250621 + 119195787 119197108 L1PA4 6152 - 12 1336 32052 232 0 3 1089 chain 20171 chr1 249250621 + 119197108 119197334 L1PA4 6152 + 4125 4351 126614 226 chain 41736 chr1 249250621 + 119197335 119197793 L1PA4 6152 + 4356 4814 66979 458 chain 27720 chr1 249250621 + 119198834 119199186 THE1B 368 + 0 368 93968 44 1 16 108 1 0 131 0 2 67 chain 23609 chr1 249250621 + 119211184 119211465 AluY 311 + 27 311 112523 100 1 2 148 0 2 32 chain 162089 chr1 249250621 + 119221078 119222955 L1PA5 6144 - 0 1872 23050 1060 34 29 783 chain 40344 chr1 249250621 + 119222955 119223413 L1PA5 6144 + 3807 4267 68689 143 0 2 315 chain 270313 chr1 249250621 + 119237249 119240355 L1PA5 6144 + 3034 6143 15172 640 3 1 982 0 1 501 4 1 84 0 1 52 0 4 372 0 4 457 2 0 9 chain 244492 chr1 249250621 + 119247049 119249891 L1PA3long 6157 - 0 2761 16531 196 6 5 648 0 5 667 1 0 175 0 3 729 0 1 239 88 0 93 chain 109962 chr1 249250621 + 119249891 119251104 L1PA3long 6157 + 2182 3394 34227 1033 1 0 179 chain 10810 chr1 249250621 + 119251205 119251328 L1PA5 6144 + 5536 5659 156940 123 chain 20418 chr1 249250621 + 119251328 119251557 L1PA5 6144 + 5662 5891 125841 229 chain 21743 chr1 249250621 + 119251558 119251813 L1PA5 6144 + 5891 6144 121230 247 2 0 6 chain 165597 chr1 249250621 + 119263673 119265548 L1PA4 6152 + 4271 6146 22569 1621 1 0 232 6 7 15 chain 50687 chr1 249250621 + 119267705 119268318 L1PA8 5853 - 1876 2489 58511 346 1 0 236 0 1 30 chain 149824 chr1 249250621 + 119268322 119270192 L1PA8 5853 + 3990 5853 24640 225 5 3 112 8 7 656 0 1 15 2 0 555 1 0 44 2 0 6 0 4 60 2 1 9 9 8 44 3 2 18 1 0 93 chain 56602 chr1 249250621 + 119277886 119278502 L1PA3long 6157 - 376 993 54782 236 0 1 380 chain 34513 chr1 249250621 + 119278502 119278876 L1PA3long 6157 + 5779 6153 76886 374 chain 2938 chr1 249250621 + 119302012 119302043 L1MB3 1562 - 139 170 226360 31 chain 76150 chr1 249250621 + 119303847 119304772 L1PA7 6471 + 5539 6468 45393 77 1 4 89 0 1 426 2 0 251 0 2 79 chain 12908 chr1 249250621 + 119315910 119316222 L1PB 1623 + 1309 1586 148600 137 1 0 7 2 1 17 113 82 22 2 0 11 chain 16983 chr1 249250621 + 119316960 119317140 L1PA2 6032 + 5650 5830 135637 180 chain 267310 chr1 249250621 + 119320048 119323296 L1PA7 6471 - 9 3251 15324 70 0 1 688 1 0 5 0 2 74 1 0 993 4 0 50 0 1 4 1 0 339 1 0 301 0 3 95 10 0 259 0 2 22 0 4 190 1 0 139 chain 3485 chr1 249250621 + 119348921 119348972 MER33 330 + 175 229 215589 14 1 4 36 chain 36611 chr1 249250621 + 119350175 119350608 L1PA5 6144 - 0 426 74085 140 7 0 286 chain 32794 chr1 249250621 + 119365471 119365835 L1PA4 6152 - 97 462 79541 63 0 1 301 chain 550446 chr1 249250621 + 119374061 119380203 L1PA3long 6157 + 5 6157 1384 747 0 4 2009 1 2 1525 0 2 1251 0 1 357 1 2 139 0 1 112 chain 19562 chr1 249250621 + 119387519 119387763 THE1B 368 - 1 247 128486 146 0 1 30 1 2 67 chain 566295 chr1 249250621 + 119394974 119401003 L1HS 6032 + 1 6030 131 6029 chain 31600 chr1 249250621 + 119405889 119406371 LTR10E 629 - 96 629 81489 25 5 4 38 12 11 12 21 17 42 1 0 7 1 0 161 0 60 138 1 0 18 chain 17224 chr1 249250621 + 119481524 119481747 L1PA16 3655 + 3270 3491 134988 20 2 0 201 chain 39462 chr1 249250621 + 119500100 119500555 L1PA4 6152 - 0 460 70066 6 0 5 449 chain 3670 chr1 249250621 + 119500610 119500675 MER96B 391 + 97 154 212416 39 2 0 6 1 0 4 5 0 8 chain 29654 chr1 249250621 + 119558781 119559091 AluYg6 310 - 0 310 86057 310 chain 537415 chr1 249250621 + 119563256 119569268 L1PA3long 6157 + 0 6157 3252 152 0 1 188 18 31 148 1 0 261 0 128 920 1 0 461 0 4 1767 0 1 1015 0 6 1061 6 0 13 chain 6847 chr1 249250621 + 119591732 119591942 LTR1 825 + 184 450 178602 60 106 149 13 1 14 30 chain 110955 chr1 249250621 + 119600932 119602144 L1PA2 6032 - 0 1218 33945 15 0 3 84 1 0 750 0 4 362 chain 25045 chr1 249250621 + 119605168 119605520 THE1A 353 + 0 353 104570 25 2 3 79 2 1 61 11 12 21 1 0 98 0 1 52 chain 128384 chr1 249250621 + 119605529 119607104 THE1A-int 1579 + 9 1574 28480 256 0 2 178 0 1 28 23 8 419 1 0 142 0 1 239 22 23 167 0 1 100 chain 25347 chr1 249250621 + 119607109 119607454 THE1A 353 + 0 353 102973 25 2 3 83 1 0 15 0 5 71 1 0 62 5 9 80 chain 11931 chr1 249250621 + 119617396 119617581 L1PB4 2604 + 2376 2552 152475 10 2 0 58 16 9 99 chain 22004 chr1 249250621 + 119638052 119638332 AluSg4 309 - 17 288 120210 56 0 2 22 18 7 184 chain 8179 chr1 249250621 + 119671856 119671991 MLT1A0 366 + 211 349 170073 29 12 13 61 3 5 30 chain 549065 chr1 249250621 + 119693573 119700040 L1PA4 6152 - 14 6149 1568 1221 339 0 1078 1 0 705 0 4 553 0 3 1231 0 1 1339 chain 28709 chr1 249250621 + 119694831 119695133 AluYb8 318 - 16 318 90299 302 chain 25065 chr1 249250621 + 119704414 119704689 L1PA2 6032 + 5757 6032 104482 275 chain 28265 chr1 249250621 + 119710921 119711246 LTR17 781 - 455 781 92060 119 0 1 206 chain 52255 chr1 249250621 + 119711557 119713984 HERV17-int 4347 - 1 2431 15449 1582 13 4 573 0 5 207 0 7 52 chain 104327 chr1 249250621 + 119714017 119715334 LTR12C 1709 + 30 1709 35661 237 30 29 42 10 53 73 13 14 170 0 278 145 0 47 106 11 4 32 0 3 298 1 0 66 1 0 82 chain 414275 chr1 249250621 + 119715433 119720335 HERV9-int 5642 + 0 4824 9691 294 0 3 498 1 0 118 4 0 194 83 4 352 0 2 353 1 0 1253 1 0 355 0 1 4 1 0 66 0 1 516 1 0 4 0 1 534 0 1 261 0 1 8 chain 4738 chr1 249250621 + 119716572 119716622 HERV9-int 5642 + 1057 1107 198054 50 chain 120165 chr1 249250621 + 119721507 119723005 LTR12C 1709 + 0 1698 31003 64 0 1 198 1 0 75 10 53 73 3 4 251 0 118 238 0 47 102 11 4 330 1 0 63 5 4 73 chain 18129 chr1 249250621 + 119723015 119723857 HERV17-int 4347 - 2431 3281 15449 241 1 2 133 1 0 4 5 6 58 1 2 61 5 6 49 0 1 252 0 4 31 chain 29462 chr1 249250621 + 119725430 119725894 LTR17 781 - 0 529 86788 39 0 19 5 0 3 112 7 56 11 1 0 15 1 0 49 3 0 14 18 15 42 3 0 6 3 9 59 1 0 75 chain 5949 chr1 249250621 + 119726468 119726544 L1MA8 2339 - 1122 1198 185684 76 chain 3879 chr1 249250621 + 119730226 119730272 L1MA5 2750 - 1787 1833 209173 46 chain 9523 chr1 249250621 + 119733088 119733218 L1PA16 3655 - 63 190 162967 14 3 0 113 chain 99076 chr1 249250621 + 119743205 119744576 L1PA7 6471 + 5071 6450 37006 27 186 189 327 0 3 702 3 5 126 chain 153901 chr1 249250621 + 119754233 119756138 L1PA8 5853 + 3847 5775 24104 42 2 1 14 0 2 10 0 1 84 0 1 48 0 4 381 0 18 556 0 5 70 19 19 461 1 0 45 2 0 72 1 0 11 2 1 47 2 1 19 1 0 15 chain 117510 chr1 249250621 + 119756723 119758167 L1P2 5180 - 3725 5178 31961 15 1 0 642 0 15 221 1 0 46 2 1 266 3 2 53 1 0 44 1 0 148 chain 25906 chr1 249250621 + 119831741 119832111 THE1C 375 + 0 371 100406 101 3 4 15 3 0 22 8 12 29 1 2 5 1 0 159 1 0 22 chain 3410 chr1 249250621 + 119832922 119832989 L1MA10 1535 + 1473 1535 216935 28 19 14 20 chain 30628 chr1 249250621 + 119835309 119835776 MLT2A1 477 + 0 459 83159 168 5 2 11 0 1 21 0 2 56 6 13 12 0 1 96 0 2 6 4 0 9 36 22 37 chain 8843 chr1 249250621 + 119848623 119849075 L1ME1 1623 - 544 987 166413 42 107 101 28 160 165 20 6 5 53 14 8 4 1 0 17 chain 18321 chr1 249250621 + 119849395 119849596 L1PA5 6144 - 12 212 132017 136 1 0 64 chain 13110 chr1 249250621 + 119849602 119849747 L1PA5 6144 + 5744 5889 147807 145 chain 5657 chr1 249250621 + 119849747 119849942 MLT2C1 407 + 114 320 188503 25 29 30 26 1 0 35 64 75 15 chain 93440 chr1 249250621 + 119876204 119877927 LTR12C 1709 + 0 1709 38521 41 0 4 6 26 33 109 72 73 11 0 4 8 3 0 49 0 43 82 5 8 68 0 1 134 7 235 162 0 47 90 24 0 16 11 4 270 317 0 123 5 4 84 chain 27710 chr1 249250621 + 119877414 119877715 AluYg6 310 + 0 298 94002 131 3 0 167 chain 185173 chr1 249250621 + 119885822 119888631 MER4-int 2692 - 0 2612 20484 118 0 10 102 10 9 164 18 18 84 3 0 49 0 1 94 2 0 5 87 25 33 0 1 11 0 1 21 0 1 6 3 4 14 3 4 26 1 0 136 1 3 76 0 2 190 18 19 31 1 0 10 1 0 14 0 16 95 1 2 67 162 0 25 0 5 95 1 0 95 0 1 95 5 2 194 18 13 69 1 5 513 15 14 5 2 0 19 chain 48156 chr1 249250621 + 119899151 119899746 LTR10C 591 - 0 589 60358 56 6 5 20 0 2 275 0 1 208 9 1 21 chain 7262 chr1 249250621 + 119902454 119902538 MER47A 366 - 187 271 175704 84 chain 26237 chr1 249250621 + 119906710 119907134 THE1A 353 - 0 353 99066 56 0 1 76 3 0 46 1 2 105 74 4 63 chain 109823 chr1 249250621 + 119918601 119920200 THE1B-int 1605 - 1 1605 34252 268 0 1 60 1 2 313 19 18 189 0 9 7 91 108 124 10 7 17 10 7 23 38 21 412 5 6 12 chain 91830 chr1 249250621 + 119931427 119932811 L1PB1 5432 - 16 1354 39014 25 1 0 21 1 0 24 2 0 14 1 0 4 3 1 14 29 17 17 7 6 37 1 0 15 2 1 53 2 0 8 6 2 11 1 0 10 1 0 18 39 15 88 0 2 198 0 8 178 4 0 126 18 19 249 13 14 143 chain 363129 chr1 249250621 + 119941980 119946095 L1PA4 6152 - 16 4146 11287 827 4 8 408 6 17 9 0 1 1184 1 0 1676 chain 33055 chr1 249250621 + 120028091 120029050 LTR19-int 1103 - 93 1007 79130 10 1 0 26 19 7 45 1 0 17 2 0 5 16 3 20 41 16 9 1 5 21 1 0 4 2 0 16 49 186 25 14 0 19 4 0 73 28 27 19 12 7 86 16 8 33 86 68 34 71 11 7 1 0 72 1 0 7 17 0 28 chain 535482 chr1 249250621 + 120040270 120046423 L1PA4 6152 + 1 6151 3522 207 2 0 78 4 0 294 1 0 215 0 3 36 17 0 1041 1 2 553 0 4 730 1 0 675 1 0 2244 0 15 53 chain 172799 chr1 249250621 + 120062339 120064480 L1PA7 6471 - 2 2781 21712 478 8 23 303 4 627 1035 2 0 173 0 2 138 chain 338527 chr1 249250621 + 120064480 120068436 L1PA5 6144 + 2187 6142 11940 483 21 16 10 0 5 1070 0 1 896 0 1 621 13 13 681 5 6 145 4 0 7 chain 500947 chr1 249250621 + 120116501 120122969 L1PA6 6164 + 0 6160 6788 213 0 1 20 19 20 133 26 25 37 24 16 104 1 0 216 2 19 181 11 5 82 0 2 909 0 1 38 8 3 123 0 3 196 2 0 75 0 1 98 2 1 675 313 0 377 0 2 1065 1 0 487 0 1 331 0 1 385 3 2 160 7 8 144 chain 28195 chr1 249250621 + 120184206 120184577 THE1C 375 + 0 375 92326 140 0 2 44 0 1 127 1 0 4 0 1 10 6 7 39 chain 29819 chr1 249250621 + 120211101 120211415 AluYb8 318 + 0 314 85380 314 chain 511999 chr1 249250621 + 120233733 120240143 L1PA6 6164 - 15 6164 5976 24 3 0 326 0 2 753 0 1 697 330 0 17 0 1 373 0 1 258 1 0 84 0 15 407 0 1 14 0 6 354 0 12 189 1 3 277 0 1 31 0 10 182 1 0 281 0 1 254 1 3 747 0 17 240 1 0 47 0 2 52 5 6 460 chain 20087 chr1 249250621 + 120247401 120247612 AluYg6 310 + 93 304 126867 211 chain 129210 chr1 249250621 + 120248192 120249628 L1PA4 6152 + 4566 6005 28263 474 0 1 599 0 2 118 0 1 137 1 0 107 chain 12455 chr1 249250621 + 120249629 120249767 L1PA4 6152 + 6005 6143 150441 138 chain 37069 chr1 249250621 + 120253749 120254149 L1PA3long 6157 - 11 410 73431 137 1 0 262 chain 3376 chr1 249250621 + 120264121 120264159 tRNA-Gly-GGA 38 - 0 38 217567 38 chain 12845 chr1 249250621 + 120269979 120270157 LTR43 600 - 0 187 148868 67 0 11 74 4 2 33 chain 52181 chr1 249250621 + 120317223 120317881 PABL_A 660 - 0 660 57510 85 0 2 198 0 1 132 2 1 241 chain 69298 chr1 249250621 + 120328843 120329606 MER11D 897 - 0 763 48685 763 chain 13032 chr1 249250621 + 120355925 120356251 L1PB1 5432 - 10 313 148117 18 1 0 34 1 0 22 68 52 15 8 7 24 27 31 51 2 0 9 5 1 14 1 0 10 1 0 15 chain 2842 chr1 249250621 + 120358287 120358319 MER3 215 - 135 167 227974 32 chain 26144 chr1 249250621 + 120361177 120361509 L1PA6 6164 - 2 338 99424 8 2 0 137 18 24 167 chain 90449 chr1 249250621 + 120361515 120362524 L1PA4 6152 - 11 1020 39486 1009 chain 10227 chr1 249250621 + 120363381 120363507 L1PA8A 6298 - 30 156 159483 126 chain 8520 chr1 249250621 + 120365490 120365602 L1P3b 214 - 39 151 168190 12 3 0 15 0 3 82 chain 7348 chr1 249250621 + 120366144 120366233 L1MB3 1562 + 625 714 175106 89 chain 19570 chr1 249250621 + 120395539 120395779 L1PA6 6164 + 5921 6162 128462 90 1 2 149 chain 45946 chr1 249250621 + 120397570 120398128 PABL_A 660 + 0 652 62086 83 0 2 5 9 0 189 0 101 272 chain 32914 chr1 249250621 + 120417363 120417758 L1PA7 6471 - 1 395 79347 6 2 0 11 0 1 376 chain 86550 chr1 249250621 + 120417758 120418775 L1PA7 6471 + 5024 6044 40950 595 1 4 421 chain 6478 chr1 249250621 + 120443027 120443132 MER3 215 + 9 121 181406 24 16 23 65 chain 22628 chr1 249250621 + 120452723 120453063 MER1B 344 - 0 340 117434 68 7 14 214 31 25 5 1 0 14 chain 46498 chr1 249250621 + 120541330 120541841 L1PA5 6144 - 16 527 61598 511 chain 25181 chr1 249250621 + 120543508 120543858 THE1A 353 + 0 353 103842 88 8 10 12 1 0 61 0 1 128 7 8 45 chain 114465 chr1 249250621 + 120544125 120545583 HERVL-int 5654 + 4184 5649 32955 394 0 12 359 1 4 50 16 6 167 1 0 4 7 10 35 8 5 43 0 3 373 chain 29258 chr1 249250621 + 120545588 120545985 MLT2A1 477 + 0 395 87751 18 2 0 124 28 32 211 4 0 10 chain 4731 chr1 249250621 + 120553395 120553685 L1MB7 1623 + 1331 1583 198155 5 1 0 9 2 1 17 12 18 41 1 0 7 172 131 23 chain 47063 chr1 249250621 + 120570094 120570678 L1PA8 5853 - 0 576 61151 9 1 0 84 1 0 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 287 chain 10842 chr1 249250621 + 120583063 120583186 L1PA4 6152 - 1 122 156818 5 2 0 116 chain 3253 chr1 249250621 + 120591468 120591504 MIRb 242 + 164 200 219933 36 chain 30680 chr1 249250621 + 120631674 120632083 L1PA11 4918 - 401 801 83070 9 4 0 20 1 0 14 2 0 67 2 0 7 0 1 4 1 0 48 1 0 4 1 2 224 chain 7065 chr1 249250621 + 120650979 120651085 MER20 218 - 75 187 176979 29 1 2 25 4 9 47 chain 20798 chr1 249250621 + 120657595 120657862 AluY 311 + 0 285 124606 40 6 25 67 0 1 74 2 0 78 chain 11535 chr1 249250621 + 120682571 120682726 L1PA16 3655 - 571 728 154170 98 4 6 53 chain 28121 chr1 249250621 + 120773389 120773750 L1PA5 6144 + 5783 6144 92565 5 3 0 59 0 7 37 2 0 241 3 1 11 chain 17331 chr1 249250621 + 120788067 120788295 AluY 311 + 74 295 134708 59 1 0 47 0 1 4 11 4 106 chain 8326 chr1 249250621 + 120788388 120788488 MSTD 398 - 78 178 169242 100 chain 42455 chr1 249250621 + 120792137 120792630 L1PA7 6471 - 12 505 66070 493 chain 13790 chr1 249250621 + 120831943 120832149 MER2 342 + 140 332 145302 87 4 0 68 1 2 5 11 0 30 chain 11789 chr1 249250621 + 120846663 120846839 Tigger1 2417 - 13 184 153099 38 4 0 13 1 0 17 0 1 71 9 8 23 chain 30305 chr1 249250621 + 120873141 120873459 AluYb8 318 - 0 318 83902 318 chain 24429 chr1 249250621 + 120890232 120890543 AluY 311 + 0 294 107917 123 20 3 168 chain 13553 chr1 249250621 + 120893677 120894265 Tigger4 2445 + 143 406 146156 6 1 0 10 1 0 12 2 0 5 13 6 23 7 6 11 2 0 14 5 1 72 0 1 15 323 15 66 chain 9736 chr1 249250621 + 120894265 120894413 Tigger4b 360 + 201 358 160587 96 19 28 33 chain 23225 chr1 249250621 + 120895909 120896224 AluY 311 + 0 297 114561 132 28 13 92 1 2 48 4 0 10 chain 16696 chr1 249250621 + 120901532 120901741 MER41A 554 + 340 554 136417 128 0 5 81 chain 29541 chr1 249250621 + 120907440 120907750 AluYa5 310 - 0 310 86468 310 chain 40394 chr1 249250621 + 120922774 120923342 LTR61 567 - 9 567 68746 29 2 1 15 3 0 16 0 1 216 0 6 42 7 10 156 17 11 37 10 0 18 chain 24785 chr1 249250621 + 121101706 121102025 LTR12 884 + 2 884 105968 23 9 8 22 0 41 171 0 523 94 chain 541317 chr1 249250621 + 121143309 121149325 L1PA3long 6157 + 0 6156 2618 151 0 1 103 0 1 511 11 139 2259 0 1 1537 0 2 252 0 6 343 0 1 849 chain 10534 chr1 249250621 + 121160280 121160405 SVA_A 1864 - 1724 1849 158119 125 chain 4381 chr1 249250621 + 121165738 121165786 LTR47A 437 + 327 375 202192 48 chain 73916 chr1 249250621 + 121177970 121179401 L1MA1 4479 + 242 1417 46556 37 2 0 74 0 1 92 11 0 136 0 10 71 0 1 43 319 4 10 0 1 10 0 18 7 2 10 136 0 1 97 17 8 27 4 0 65 8 35 52 9 15 45 24 32 114 0 4 19 chain 75506 chr1 249250621 + 121214364 121215388 THE1B-int 1605 - 0 1084 45765 74 0 2 207 12 12 46 9 7 144 1 0 92 0 2 59 9 66 26 1 2 149 21 22 174 chain 516104 chr1 249250621 + 121218929 121225073 L1PA5 6144 + 0 6144 5564 685 0 1 444 1 15 79 5 6 178 0 5 21 0 2 820 0 2 54 1 0 749 0 4 99 1 0 6 0 1 131 24 6 194 1 0 142 10 0 56 1 2 521 0 1 1063 0 1 471 1 0 4 0 1 368 3 1 11 chain 207611 chr1 249250621 + 121241580 121244127 L1PA6 6164 + 3607 6159 18670 15 9 10 26 1 0 333 1 0 4 0 1 6 3 1 30 0 1 64 11 11 539 0 3 33 0 1 106 0 1 523 1 0 88 0 1 20 0 1 579 0 5 5 10 5 140 chain 33233 chr1 249250621 + 121251840 121252289 LTR12_ 688 + 0 651 78825 90 0 66 7 1 0 279 10 13 28 6 140 28 chain 136037 chr1 249250621 + 121252289 121253956 HERV9-int 5642 + 1339 4824 26825 189 12 13 126 0 2 119 0 3 301 0 3 127 0 1 306 1 13 298 0 1795 80 0 1 108 chain 3194 chr1 249250621 + 121255912 121255948 LTR12_ 688 + 383 419 221044 36 chain 564483 chr1 249250621 + 121274032 121280059 L1HS 6032 - 2 6032 225 1275 0 4 1670 1 0 3081 chain 75617 chr1 249250621 + 121287551 121288384 L1PA4 6152 - 9 842 45704 833 chain 4885 chr1 249250621 + 121296614 121296666 L1PA4 6152 + 6094 6146 196424 52 chain 6783 chr1 249250621 + 121315513 121315587 L1PA3long 6157 + 6083 6157 179084 74 chain 540806 chr1 249250621 + 121316089 121322216 L1PA3long 6157 + 0 6157 2688 1081 1 6 75 0 3 1164 0 2 24 0 5 322 0 2 483 0 2 97 0 4 467 0 1 206 0 1 1343 5 9 593 8 9 258 chain 494526 chr1 249250621 + 121322984 121329402 L1PA7 6471 - 4 6466 7140 28 0 6 113 1 2 92 2 1 53 1 0 102 0 3 251 0 1 199 0 2 90 1 0 274 0 4 133 1 3 172 0 1 134 0 2 319 0 1 477 5 6 60 7 8 427 1 0 23 0 4 493 0 1 317 0 1 23 9 0 593 0 1 274 0 5 6 7 12 98 89 90 4 1 0 203 2 17 9 1 0 330 0 29 26 67 18 154 15 31 85 0 1 80 5 0 234 1 0 86 5 15 235 chain 509048 chr1 249250621 + 121340009 121346117 L1PA4 6152 - 9 6151 6241 12 19 10 8 0 15 264 0 1 35 0 1 141 0 1 5 1 0 124 0 1 216 5 4 225 0 1 1371 0 1 549 0 6 112 0 1 331 5 0 8 1 6 341 3 1 464 0 1 609 7 23 11 1 0 80 0 3 224 0 1 439 12 13 244 0 4 70 25 19 146 chain 197028 chr1 249250621 + 121476216 121478365 L1HS 6032 + 3883 6032 19423 2149 chain 28628 chr1 249250621 + 142543008 142543352 L1P1 4361 + 3718 4065 90618 166 0 2 48 0 1 130 chain 150968 chr1 249250621 + 142547928 142549680 L1PA4 6152 - 6 1769 24482 107 0 1 225 0 1 413 1 5 86 0 4 261 0 1 659 chain 521860 chr1 249250621 + 142559803 142565910 L1PA4 6152 + 15 6152 4974 111 1 15 898 0 1 405 1 2 284 0 1 697 0 3 350 0 4 268 6 7 140 0 1 480 1 0 1682 0 1 532 0 1 238 0 3 13 chain 21161 chr1 249250621 + 142578034 142578274 L1PA4 6152 - 12 252 123338 240 chain 22432 chr1 249250621 + 142592201 142592482 LTR14A 344 + 0 344 118333 42 0 60 64 0 4 170 1 0 4 chain 127852 chr1 249250621 + 142592577 142594239 HERVK14-int 1672 + 1 1647 28606 28 1 0 12 1 0 47 1 0 44 2 1 172 1 0 28 2 0 235 1 0 249 3 2 163 1 0 79 3 1 9 3 0 35 1 0 46 12 16 82 1 0 49 12 13 15 0 1 82 7 6 55 0 1 7 2 0 31 2 0 9 1 0 128 chain 36112 chr1 249250621 + 142594258 142594709 MER9a2 513 + 0 513 74751 15 1 0 4 0 1 207 2 68 97 0 2 20 6 0 99 chain 150738 chr1 249250621 + 142596048 142598063 HERVK9-int 4720 + 54 3614 24509 4 1 0 27 2 3 36 3 2 6 1 0 26 6 5 227 9 11 5 2 0 266 14 0 824 0 924 230 52 690 274 chain 416285 chr1 249250621 + 142605234 142610426 L1PA7 6471 + 1129 6464 9630 53 5 6 70 0 40 251 8 6 212 0 1 473 0 4 244 1 0 77 1 11 62 1 2 71 0 1 176 0 4 356 4 5 65 1 0 92 0 4 130 1 5 124 0 70 70 0 1 472 0 1 463 0 1 185 19 19 111 0 1 439 9 12 101 0 4 86 3 0 610 3 4 135 3 0 5 chain 24906 chr1 249250621 + 142622939 142625929 MER57-int 2662 - 15 2494 105305 22 3 0 27 29 23 16 19 16 5 0 1 12 36 21 68 18 12 92 2344 1894 19 73 39 67 2 0 81 0 2 45 0 5 12 chain 532064 chr1 249250621 + 142626735 142632860 L1PA3long 6157 - 15 6153 3955 606 0 8 299 1 0 4 0 1 327 0 7 603 8 11 1105 5 6 43 0 1 2387 3 0 513 4 0 217 chain 3889 chr1 249250621 + 142658547 142658594 MSTA 426 - 237 284 209038 47 chain 7309 chr1 249250621 + 142659128 142659220 MSTA-int 1630 - 1518 1607 175382 6 3 0 83 chain 21804 chr1 249250621 + 142663984 142664269 L1PA7 6471 + 5369 5666 121003 225 0 6 23 0 6 37 chain 50459 chr1 249250621 + 142664272 142664910 L1PA7 6471 + 5670 6308 58675 638 chain 12104 chr1 249250621 + 142664911 142665066 L1PA7 6471 + 6311 6469 151780 103 0 4 40 1 0 11 chain 28039 chr1 249250621 + 142796539 142796836 AluYa5 310 + 0 296 92859 132 1 0 164 chain 66763 chr1 249250621 + 142808427 142809195 L1PA5 6144 - 9 777 49750 768 chain 3125 chr1 249250621 + 142829786 142829823 L1MB8 1703 - 192 230 222444 14 0 1 23 chain 529011 chr1 249250621 + 142876162 142882314 L1PA2 6032 + 0 6031 4299 153 16 15 51 5 1 32 5 4 513 137 9 256 0 3 62 0 3 335 0 2 1124 1 2 482 1 2 266 0 3 2713 chain 4277 chr1 249250621 + 142886505 142886560 MER57-int 2662 + 2334 2388 203516 8 1 0 46 chain 420297 chr1 249250621 + 142899252 142904408 L1PA7 6471 - 10 5341 9525 152 5 6 681 1 5 108 1 4 579 8 9 165 0 1 463 0 1 130 0 2 160 0 30 29 0 2 192 0 70 122 1 5 649 0 4 256 1 2 57 1 11 81 1 0 243 0 4 680 3 0 5 0 1 254 8 48 120 chain 149628 chr1 249250621 + 142911668 142913703 HERVK9-int 4720 - 1049 4684 24669 11 0 63 231 78 716 230 0 924 513 7 8 302 19 0 510 6 5 26 1 0 9 2 1 64 1 0 4 8 5 13 chain 41394 chr1 249250621 + 142915023 142915510 MER9a2 513 - 0 487 67421 487 chain 131345 chr1 249250621 + 142915536 142917287 HERVK14-int 1672 - 7 1671 27791 6 1 0 140 1 0 9 2 0 31 5 4 59 1 0 91 0 1 15 0 1 203 1 0 34 3 0 9 3 1 79 1 0 163 4 3 29 84 16 203 1 0 235 2 0 28 1 0 217 1 0 46 2 1 11 1 0 29 chain 24099 chr1 249250621 + 142917382 142917666 LTR14A 344 - 0 344 109751 244 0 60 40 chain 21048 chr1 249250621 + 142931712 142931952 L1PA4 6152 + 5900 6140 123735 240 chain 524364 chr1 249250621 + 142944091 142950202 L1PA4 6152 - 0 6137 4737 13 0 3 244 0 1 231 0 1 294 0 1 699 0 1 35 1 0 947 1 0 480 0 1 769 0 3 697 0 1 284 1 2 411 0 1 892 1 15 111 chain 34869 chr1 249250621 + 142951576 142952016 L1PA5 6144 + 5688 6129 76382 122 1 2 178 18 18 121 chain 3639 chr1 249250621 + 142958373 142958418 MER5A 189 - 132 177 212985 45 chain 149850 chr1 249250621 + 142960330 142962081 L1PA4 6152 + 4383 6146 24636 411 11 6 11 0 5 231 0 1 256 0 4 86 0 4 300 0 1 118 0 1 220 0 1 107 chain 28842 chr1 249250621 + 142966676 142967020 L1P1 4361 - 296 643 89704 132 0 1 46 0 2 166 chain 15403 chr1 249250621 + 143120999 143121348 MER57-int 2662 - 15 327 140195 22 3 0 27 29 23 16 19 16 5 0 1 12 36 21 68 18 12 12 5 0 77 chain 528105 chr1 249250621 + 143125606 143131754 L1PA2 6032 - 1 6032 4392 845 0 4 1613 0 1 403 0 1 120 0 1 478 1 2 951 0 4 169 0 2 338 0 3 318 137 9 513 5 4 30 4 0 54 16 15 153 chain 3889 chr1 249250621 + 143154994 143155041 MSTA 426 - 237 284 209037 47 chain 8990 chr1 249250621 + 143155208 143155332 MSTA-int 1630 - 19 142 165662 90 6 5 28 chain 82307 chr1 249250621 + 143160431 143161528 L1PA7 6471 + 5369 6468 42621 228 0 6 11 7 0 52 3 4 431 0 2 7 7 5 193 1 3 157 chain 3899 chr1 249250621 + 143182991 143183037 MST-int 1221 + 378 424 208874 46 chain 65899 chr1 249250621 + 143227467 143228234 L1PA5 6144 + 5367 6135 50141 435 0 1 332 chain 12799 chr1 249250621 + 143251395 143251699 L1PA15 4387 + 4064 4352 149055 40 1 0 26 1 0 55 22 19 13 4 3 33 46 43 20 18 8 5 0 3 20 chain 5456 chr1 249250621 + 143254258 143254380 Tigger5 388 - 52 168 190466 34 34 31 11 2 0 25 1 0 15 chain 89405 chr1 249250621 + 143271817 143273373 L1PB 1623 + 112 1436 39839 5 1 0 52 4 1 18 7 4 76 2 1 103 2 0 26 2 1 69 28 7 41 13 14 149 0 1 101 31 32 176 4 5 303 14 0 85 189 0 31 2 1 22 chain 81933 chr1 249250621 + 143284841 143285938 L1PA7 6471 - 3 1102 42790 9 4 0 146 3 5 176 0 1 461 3 4 41 4 0 25 4 10 221 chain 66010 chr1 249250621 + 143360149 143360916 L1PA5 6144 - 9 777 50091 332 0 1 435 chain 82910 chr1 249250621 + 143426433 143427517 L1PA7 6471 - 2 1102 42375 10 2 0 41 0 4 103 1 3 638 3 4 36 0 5 25 0 6 225 chain 8990 chr1 249250621 + 143432617 143432741 MSTA-int 1630 + 1488 1611 165660 28 6 5 90 chain 2621 chr1 249250621 + 143440658 143440709 L1MCa 1829 + 1766 1812 231407 25 11 6 15 chain 25906 chr1 249250621 + 143472944 143473324 L1MA3 4352 + 3059 3445 100400 41 8 16 70 8 7 209 4 3 40 chain 417113 chr1 249250621 + 143475982 143481172 L1PA7 6471 - 7 5341 9601 5 3 0 132 1 0 4 1 3 494 0 2 5 9 7 108 0 2 78 0 4 110 0 3 433 5 6 112 19 19 60 6 7 118 0 1 463 0 1 472 0 1 72 0 70 122 2 6 301 4 0 6 0 4 7 1 0 4 0 1 331 0 4 250 1 2 57 1 11 77 1 0 244 0 4 476 0 1 209 7 6 238 0 49 5 9 0 127 chain 152954 chr1 249250621 + 143488380 143490396 HERVK9-int 4720 - 1107 4666 24238 306 2 0 7 10 650 230 0 924 147 0 1 676 17 0 444 14 15 50 6 5 26 1 0 8 1 0 66 1 0 4 chain 33326 chr1 249250621 + 143491739 143492190 MER9a2 513 - 0 513 78695 11 0 4 6 5 1 44 0 2 26 14 6 19 0 2 98 1 67 207 0 1 4 1 0 15 chain 130887 chr1 249250621 + 143492190 143493874 HERVK14-int 1672 - 7 1671 27887 6 1 0 140 1 0 9 2 0 31 2 0 7 0 1 55 1 0 88 0 1 18 0 1 140 28 28 35 1 0 34 3 0 9 3 1 79 1 0 163 2 1 250 1 0 235 2 0 28 1 0 172 2 1 44 1 0 47 1 0 12 1 0 28 chain 23053 chr1 249250621 + 143493969 143494249 LTR14A 344 - 0 344 115381 177 0 4 63 0 60 40 chain 11981 chr1 249250621 + 143494291 143494459 L1P4 1494 + 244 425 152286 13 7 17 63 0 3 85 chain 21296 chr1 249250621 + 143508295 143508540 L1PA4 6152 + 5900 6152 122874 239 0 7 6 chain 529041 chr1 249250621 + 143520658 143526788 L1PA4 6152 - 9 6152 4295 251 1 2 1261 1 0 588 0 1 865 0 1 742 0 3 1193 2 0 195 0 1 175 3 0 153 0 1 20 11 10 242 2 0 283 0 14 142 chain 34959 chr1 249250621 + 143528145 143528584 L1PA4 6152 + 5695 6140 76250 118 0 1 82 0 4 97 8 1 8 0 7 25 0 1 101 chain 3853 chr1 249250621 + 143535068 143535113 MER5A 189 - 132 177 209591 45 chain 148877 chr1 249250621 + 143537053 143538808 L1PA4 6152 + 4383 6149 24774 102 0 5 544 8 9 179 2 3 75 1 5 795 9 0 8 0 9 32 chain 8499 chr1 249250621 + 143542107 143542208 HERVH-int 3825 - 1558 1659 168302 101 chain 120618 chr1 249250621 + 143542210 143543631 SVA_D 2077 + 0 2071 30838 13 7 3 13 3 7 441 1 3 113 0 40 39 1 38 85 0 80 40 1 0 1 0 490 38 0 1 5 1 2 619 chain 14166 chr1 249250621 + 143647021 143647177 U1 164 - 8 164 143992 156 chain 13688 chr1 249250621 + 143673128 143673290 U1 164 - 0 164 145636 22 1 3 139 chain 32443 chr1 249250621 + 143677569 143678349 MER51D 577 + 104 577 80126 35 2 6 222 319 12 11 4 0 109 1 0 8 3 1 12 11 14 43 chain 7448 chr1 249250621 + 143680206 143680299 LTR24C 604 + 71 164 174456 93 chain 6148 chr1 249250621 + 143690027 143690101 tRNA-Asn-AAC 74 + 0 74 184006 74 chain 123782 chr1 249250621 + 143723001 143724571 THE1B-int 1605 + 0 1599 29779 25 0 1 404 1 26 219 0 1 4 0 2 274 3 2 534 0 2 101 1 0 4 chain 45118 chr1 249250621 + 143725603 143726110 L1PA3long 6157 - 5 511 62916 427 1 0 79 chain 29163 chr1 249250621 + 143726110 143726428 L1PA3long 6157 + 5351 5669 88239 318 chain 49946 chr1 249250621 + 143746031 143746590 L1PA3long 6157 + 5601 6157 59058 551 3 0 5 chain 103525 chr1 249250621 + 143754001 143755245 L1PA6 6164 - 18 1262 35858 447 9 5 296 0 1 75 0 4 275 1 0 141 chain 21753 chr1 249250621 + 143760198 143760481 L1PA16 3655 + 3310 3590 121197 268 3 0 12 chain 6036 chr1 249250621 + 143876900 143876980 MADE1 96 + 0 96 184927 32 1 17 47 chain 11667 chr1 249250621 + 143905291 143905467 Tigger1 2417 + 2233 2404 153613 23 9 8 73 0 1 15 1 0 9 4 0 42 chain 42416 chr1 249250621 + 143959464 143959957 L1PA7 6471 + 5966 6459 66124 493 chain 8326 chr1 249250621 + 143963618 143963718 MSTD 398 + 220 320 169241 100 chain 27803 chr1 249250621 + 143978384 143978745 L1PA5 6144 - 0 361 93681 11 3 1 247 3 1 33 0 7 56 3 0 5 chain 28770 chr1 249250621 + 143999493 143999794 AluYa5 310 - 9 310 90016 301 chain 145476 chr1 249250621 + 144016769 144018639 LTR12C 1709 - 0 1709 25261 481 0 4 107 2 0 6 1 0 274 164 3 520 1 0 4 0 1 201 6 5 103 chain 13697 chr1 249250621 + 144017640 144017800 LTR12C 1709 - 712 872 112900 160 chain 505457 chr1 249250621 + 144038448 144043955 L1PA2 6032 - 0 6032 6498 14 0 2 704 1 0 140 1 0 3099 0 1 760 1 0 690 0 524 47 0 1 50 chain 24794 chr1 249250621 + 144088903 144089222 LTR12 884 + 2 884 105925 23 9 8 22 0 41 171 0 523 94 chain 200236 chr1 249250621 + 144153299 144156404 L1P2 5180 - 1949 4335 19191 27 0 1 107 0 1 300 0 4 262 0 1 91 0 3 518 0 1 68 734 0 17 0 1 304 0 1 57 0 1 389 8 9 223 chain 55255 chr1 249250621 + 144154683 144155328 L1PA4 6152 + 5492 6138 55552 579 5 6 61 chain 29574 chr1 249250621 + 144297633 144298069 LTR7 482 + 0 475 86300 101 16 20 125 29 62 78 0 2 87 chain 6427 chr1 249250621 + 144301610 144301684 tRNA-Asn-AAC 74 + 0 74 181813 74 chain 32106 chr1 249250621 + 144302924 144303364 MER51D 577 - 19 473 80677 19 1 0 28 6 4 8 1 0 47 7 17 45 1 0 63 0 5 175 1 0 12 0 5 26 chain 6148 chr1 249250621 + 144308613 144308687 tRNA-Asn-AAC 74 - 0 74 184008 74 chain 18093 chr1 249250621 + 144314186 144314428 LTR71B 605 + 272 605 132609 10 0 91 32 6 6 194 chain 22350 chr1 249250621 + 144315036 144315328 AluSp 311 + 11 297 118702 37 16 10 239 chain 8271 chr1 249250621 + 144318405 144318509 LTR24C 604 - 435 539 169569 104 chain 36746 chr1 249250621 + 144320397 144320989 MER4D1 891 - 256 891 73883 9 4 0 22 0 7 26 14 19 9 0 12 87 8 28 20 11 17 51 5 6 106 0 13 24 21 4 175 chain 45910 chr1 249250621 + 144321948 144322454 L1PA3long 6157 - 5 511 62123 506 chain 28866 chr1 249250621 + 144322454 144322772 L1PA3long 6157 + 5351 5669 89600 318 chain 50222 chr1 249250621 + 144342370 144342925 L1PA3long 6157 + 5601 6156 58851 555 chain 103638 chr1 249250621 + 144350315 144351559 L1PA6 6164 - 18 1262 35818 451 5 1 296 0 1 75 0 4 275 1 0 141 chain 21682 chr1 249250621 + 144356514 144356799 L1PA16 3655 + 3308 3590 121461 270 3 0 12 chain 152720 chr1 249250621 + 144381363 144383104 L1PA5 6144 + 4400 6142 24265 222 1 0 423 0 1 24 0 1 222 0 1 701 2 1 146 chain 29574 chr1 249250621 + 144477862 144478298 LTR7 482 + 0 475 86299 101 16 20 125 29 62 78 0 2 87 chain 6296 chr1 249250621 + 144481839 144481913 tRNA-Asn-AAC 74 + 0 74 182844 74 chain 31892 chr1 249250621 + 144483153 144483593 MER51D 577 - 19 473 81019 19 1 0 28 6 4 8 1 0 47 7 17 45 1 0 63 0 5 175 1 0 12 0 5 26 chain 6148 chr1 249250621 + 144488842 144488916 tRNA-Asn-AAC 74 - 0 74 184007 74 chain 18093 chr1 249250621 + 144494416 144494658 LTR71B 605 + 272 605 132608 10 0 91 32 6 6 194 chain 3978 chr1 249250621 + 144495176 144495242 MLT2A2 560 + 488 560 207714 13 10 16 43 chain 22441 chr1 249250621 + 144495278 144495571 AluSp 311 + 11 298 118287 37 16 10 240 chain 8271 chr1 249250621 + 144498652 144498756 LTR24C 604 - 435 539 169568 104 chain 36746 chr1 249250621 + 144500647 144501239 MER4D1 891 - 256 891 73882 9 4 0 22 0 7 26 14 19 9 0 12 87 8 28 20 11 17 51 5 6 106 0 13 24 21 4 175 chain 45613 chr1 249250621 + 144502200 144502706 L1PA3long 6157 - 5 511 62387 506 chain 28857 chr1 249250621 + 144502706 144503024 L1PA3long 6157 + 5351 5669 89639 318 chain 50149 chr1 249250621 + 144522584 144523140 L1PA3long 6157 + 5601 6156 58908 303 1 0 252 chain 44272 chr1 249250621 + 144553944 144554489 MLT2A2 560 + 14 560 63855 192 0 1 353 chain 26019 chr1 249250621 + 144557227 144557587 THE1C 375 - 12 374 99948 13 1 0 142 16 18 183 0 1 5 chain 28265 chr1 249250621 + 144560795 144561129 L1PA5 6144 + 5794 6128 92059 334 chain 21559 chr1 249250621 + 144564572 144564960 THE1D 372 + 0 372 121930 56 52 35 75 40 42 16 1 0 148 chain 13165 chr1 249250621 + 144571792 144571948 L1PA2 6032 - 0 154 147597 6 2 0 148 chain 27453 chr1 249250621 + 144581490 144581830 AluY 311 + 0 311 94803 18 2 0 142 27 0 151 chain 86518 chr1 249250621 + 144603413 144604386 LTR5_Hs 974 + 0 974 40964 773 0 1 200 chain 50839 chr1 249250621 + 144610426 144611082 PABL_A 660 - 8 659 58404 244 0 1 35 1 0 37 0 5 240 1 0 4 15 6 79 chain 14750 chr1 249250621 + 144613033 144613210 L1PA6 6164 - 65 243 142104 86 1 2 90 chain 29202 chr1 249250621 + 144672955 144673273 L1PA3long 6157 - 488 806 88041 318 chain 44943 chr1 249250621 + 144673273 144673776 L1PA3long 6157 + 5646 6152 63126 221 0 3 282 chain 25364 chr1 249250621 + 144685398 144685682 AluY 311 + 3 287 102858 130 1 0 44 0 1 109 chain 11827 chr1 249250621 + 144703404 144703538 L1PA7 6471 - 1179 1313 152917 134 chain 21333 chr1 249250621 + 144703552 144703782 L1PA3long 6157 + 5927 6157 122745 230 chain 31337 chr1 249250621 + 144706833 144707248 MER4A1 472 + 54 472 81916 141 6 10 21 5 4 242 chain 200569 chr1 249250621 + 144818252 144821353 L1P2 5180 - 1949 4335 19168 27 0 1 107 0 1 300 0 4 262 0 1 609 0 1 71 727 0 17 0 1 304 0 1 57 0 1 389 8 9 223 chain 53819 chr1 249250621 + 144819639 144820284 L1PA4 6152 + 5492 6138 56469 505 1 8 9 7 0 57 5 6 61 chain 24086 chr1 249250621 + 144834874 144835170 AluY 311 + 0 292 109818 126 4 0 166 chain 3766 chr1 249250621 + 144839464 144839507 tRNA-Gln-CAG 43 - 0 43 210876 43 chain 167476 chr1 249250621 + 144840756 144843296 L1P2 5180 + 2 2222 22339 148 2 1 47 8 7 39 8 7 23 2 0 6 3 4 161 20 1 69 0 1 49 1 0 222 0 15 101 1 0 10 1 4 39 0 1 50 2 0 642 0 1 431 326 12 129 chain 499108 chr1 249250621 + 144843305 144849427 L1PA6 6164 + 2 6151 6889 92 39 25 80 0 1 309 2 1 423 0 25 79 0 1 4 7 6 128 0 9 1147 1 2 855 0 1 714 19 21 252 9 8 1128 0 3 144 0 1 541 1 6 6 5 0 137 chain 3042 chr1 249250621 + 144893541 144893575 MER3 215 - 133 167 224154 34 chain 26835 chr1 249250621 + 144920417 144920729 AluY 311 + 0 308 96851 126 1 0 29 3 0 153 chain 10985 chr1 249250621 + 144925607 144925886 MER33 330 - 8 282 156250 19 8 16 26 34 32 52 1 3 35 56 43 48 chain 4881 chr1 249250621 + 144944675 144944728 U2 167 + 0 53 196461 53 chain 25024 chr1 249250621 + 144960719 144961001 AluY 311 + 3 287 104662 129 0 1 44 0 1 109 chain 359058 chr1 249250621 + 144976357 144982112 L1PB1 5432 + 637 5420 11375 291 0 4 465 1 0 6 15 0 176 20 0 40 1 0 29 304 3 543 0 4 19 0 12 209 0 1 55 6 0 56 726 158 178 0 3 260 0 1 65 1 0 144 7 6 102 0 3 97 0 2 154 21 15 890 3 0 184 16 15 276 61 14 15 1 0 26 4 0 9 2 0 52 1 0 17 1 0 45 1 0 15 13 0 6 6 6 13 9 7 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21241 chr1 249250621 + 144978875 144979105 L1PA3long 6157 + 5927 6157 123052 230 chain 55348 chr1 249250621 + 145011356 145012050 L1PA7 6471 - 4 699 55491 56 5 6 78 6 8 6 2 0 176 1 0 338 0 1 26 chain 25337 chr1 249250621 + 145022761 145023063 AluSp 311 - 8 311 103037 60 0 1 242 chain 29890 chr1 249250621 + 145026746 145027058 AluYb8 318 + 0 312 85129 312 chain 24841 chr1 249250621 + 145037922 145038209 AluSp 311 - 12 300 105671 178 0 1 109 chain 526600 chr1 249250621 + 145047823 145053954 L1PA5 6144 + 3 6144 4534 92 15 29 225 2 1 372 2 1 156 0 1 152 1 2 820 0 1 1819 2 1 139 1 0 36 0 1 57 0 1 438 0 4 437 14 0 407 0 2 333 0 3 352 1 0 96 1 2 161 chain 6921 chr1 249250621 + 145058355 145058459 MER96B 391 - 65 168 178027 35 3 0 6 0 4 8 2 0 50 chain 21562 chr1 249250621 + 145063267 145063514 AluYf4 310 + 38 285 121917 247 chain 10059 chr1 249250621 + 145083008 145083215 L1MC1 2226 - 1311 1546 160277 23 22 22 18 8 36 47 14 15 44 1 0 30 chain 45696 chr1 249250621 + 145091157 145091789 LTR10E 629 - 2 629 62315 5 1 0 33 30 28 185 7 6 46 1 0 27 2 1 128 6 8 142 1 0 18 chain 12967 chr1 249250621 + 145094537 145094795 L1PB3 3668 + 3401 3613 148364 77 40 4 21 2 0 25 3 1 37 7 3 13 1 0 13 6 5 13 chain 21878 chr1 249250621 + 145182672 145182950 AluSc8 310 + 27 308 120723 106 6 8 120 1 2 45 chain 32374 chr1 249250621 + 145187956 145188439 L1PA11 4918 + 4117 4578 80234 214 2 1 63 1 0 4 0 1 7 2 0 67 2 0 14 1 0 20 4 0 9 8 3 10 14 10 14 1 0 13 2 0 11 chain 3817 chr1 249250621 + 145196521 145196563 MSTB 430 - 13 55 210127 42 chain 3253 chr1 249250621 + 145229913 145229949 MIRb 242 - 42 78 219935 36 chain 11144 chr1 249250621 + 145238245 145238367 L1PA4 6152 + 6030 6152 155653 122 chain 47019 chr1 249250621 + 145250736 145251313 L1PA8 5853 + 5277 5847 61188 287 1 0 44 2 0 73 1 0 7 1 0 52 2 1 19 1 0 87 chain 4185 chr1 249250621 + 145267912 145268007 L1MB7 1623 - 194 292 204760 7 1 0 41 12 18 17 2 1 8 1 0 6 chain 27646 chr1 249250621 + 145275410 145275807 MLT2A1 477 - 82 477 94222 10 4 0 179 11 11 21 28 32 124 2 0 18 chain 114426 chr1 249250621 + 145275812 145277249 HERVL-int 5654 - 5 1470 32962 373 0 3 46 5 2 26 0 23 167 16 6 50 1 4 359 0 12 394 chain 26525 chr1 249250621 + 145277516 145277866 THE1A 353 - 0 353 97955 52 0 1 124 0 1 65 1 0 12 8 10 88 chain 47225 chr1 249250621 + 145279489 145280010 L1PA5 6144 + 5617 6138 61024 521 chain 202265 chr1 249250621 + 145306231 145309332 L1P2 5180 - 1949 4335 19044 27 0 1 107 0 1 300 0 4 262 0 1 609 0 1 71 727 0 17 0 1 305 0 1 56 0 1 389 8 9 223 chain 55770 chr1 249250621 + 145307618 145308263 L1PA4 6152 + 5492 6138 55261 579 5 6 61 chain 3766 chr1 249250621 + 145379348 145379391 tRNA-Gln-CAG 43 - 0 43 210875 43 chain 13453 chr1 249250621 + 145382756 145382920 U1 164 + 0 164 146516 164 chain 4120 chr1 249250621 + 145395551 145395594 tRNA-Lys-AAG 49 - 6 49 205659 43 chain 6496 chr1 249250621 + 145396880 145396950 tRNA-His-CAY_ 70 - 0 70 181294 70 chain 3638 chr1 249250621 + 145397897 145397935 tRNA-Gly-GGA 38 - 0 38 213025 38 chain 6975 chr1 249250621 + 145399232 145399304 tRNA-Glu-GAG_ 72 - 0 72 177653 72 chain 24386 chr1 249250621 + 145400209 145400514 AluSq2 311 + 2 311 108159 62 0 2 67 1 2 5 0 1 170 chain 10849 chr1 249250621 + 145406910 145407036 SVA_A 1864 - 1460 1586 156784 126 chain 30847 chr1 249250621 + 145411354 145411742 MLT2A1 477 + 0 385 82775 169 4 1 29 0 1 123 1 0 62 chain 25158 chr1 249250621 + 145430055 145430344 AluSp 311 + 0 293 103964 66 0 1 24 0 3 199 chain 25451 chr1 249250621 + 145462690 145462982 AluSp 311 - 12 305 102451 273 0 1 19 chain 18168 chr1 249250621 + 145494830 145495060 AluSq2 311 + 5 237 132414 128 0 1 73 1 2 28 chain 6814 chr1 249250621 + 145496113 145496203 MER2 342 - 94 181 178843 37 4 0 39 0 1 10 chain 81897 chr1 249250621 + 145501710 145502679 LTR5_Hs 974 - 0 974 42807 53 0 17 78 1 7 553 18 0 266 chain 51624 chr1 249250621 + 145514199 145514766 L1PA3long 6157 - 0 569 57880 458 0 2 109 chain 27560 chr1 249250621 + 145527008 145527314 AluYf5 307 + 1 307 94470 306 chain 11557 chr1 249250621 + 145545615 145545745 L1PA5 6144 - 15 145 154074 130 chain 47390 chr1 249250621 + 145546542 145547232 LTR66 600 - 0 594 60908 37 0 2 73 14 0 6 20 0 71 1 7 23 71 0 150 0 1 224 chain 7026 chr1 249250621 + 145638211 145638387 L1MB2 1706 + 1528 1694 177285 17 1 2 21 25 14 16 1 0 13 1 0 7 27 29 47 chain 46607 chr1 249250621 + 145639447 145640039 LTR12_ 688 + 0 593 61529 202 1 0 73 0 1 29 1 2 286 chain 21336 chr1 249250621 + 145643552 145643840 AluSp 311 - 14 301 122732 154 1 5 10 9 3 76 0 1 38 chain 166386 chr1 249250621 + 145667058 145669062 SVA_D 2077 + 8 2077 22475 534 0 40 142 0 3 31 11 8 132 1 0 4 53 56 72 1 0 6 35 10 6 1 0 40 5 0 138 0 2 120 0 49 575 0 4 97 chain 2501 chr1 249250621 + 145667913 145667953 SVA_D 2077 + 1135 1172 111001 14 3 0 23 chain 2565 chr1 249250621 + 145668045 145668080 SVA_D 2077 + 1137 1172 82507 35 chain 132893 chr1 249250621 + 145669623 145671161 SVA_C 1631 - 0 1611 27447 6 2 0 607 1 0 14 1 2 92 1 0 21 32 34 136 3 0 117 0 1 40 0 76 465 chain 10149 chr1 249250621 + 145672604 145672750 THE1A 353 - 0 146 159852 71 6 5 43 1 2 25 chain 126716 chr1 249250621 + 145672767 145674329 THE1A-int 1579 - 5 1579 28876 476 6 5 618 0 4 49 1 7 370 1 2 26 0 2 15 chain 28408 chr1 249250621 + 145674329 145674678 THE1A 353 - 0 353 91549 151 0 1 60 0 4 26 1 0 111 chain 19159 chr1 249250621 + 145686187 145686433 AluSg7 307 - 12 258 129649 164 1 2 27 2 1 52 chain 53836 chr1 249250621 + 145708346 145709007 L1PA6 6164 - 2 667 56462 144 2 1 6 0 1 313 0 4 196 chain 6661 chr1 249250621 + 145749833 145751300 Tigger7 736 + 4 459 179994 15 7 9 22 10 5 36 1300 286 25 0 7 28 4 2 20 chain 4252 chr1 249250621 + 145765944 145765990 L1P3 4156 - 170 216 202669 46 chain 219697 chr1 249250621 + 145765990 145768505 L1PA5 6144 + 3638 6144 17901 58 0 7 244 0 2 703 0 1 641 0 3 47 0 12 341 36 4 431 3 1 11 chain 122026 chr1 249250621 + 145773593 145774938 L1PA3long 6157 - 0 1342 30377 1050 4 1 291 chain 45226 chr1 249250621 + 145774943 145775445 L1PA3long 6157 + 4312 4816 62799 220 0 1 138 0 1 144 chain 292557 chr1 249250621 + 145779305 145783636 L1PA10 4194 + 181 4161 13854 9 2 0 9 3 0 8 2 0 8 9 5 12 10 18 21 2 0 15 1 0 8 69 41 21 1 0 7 4 7 12 11 0 13 0 1 7 1 0 79 15 13 29 0 3 40 9 3 72 5 4 116 14 16 212 5 0 48 29 0 141 0 4 93 313 0 113 10 19 160 0 1 239 0 5 57 0 3 349 0 4 152 4 5 224 0 1 63 0 4 11 0 1 19 0 9 17 0 1 192 5 6 11 0 3 50 0 4 95 0 1 29 3 0 405 7 8 210 0 1 4 1 0 324 1 0 21 1 0 19 10 6 28 1 0 11 chain 4138 chr1 249250621 + 145785137 145785200 L1ME1 1623 + 1054 1113 205385 29 3 0 6 1 0 24 chain 8918 chr1 249250621 + 145794035 145794325 L1MD1 2063 - 242 537 166044 43 161 166 86 chain 9594 chr1 249250621 + 145803671 145803784 L1PA7 6471 - 1 114 162626 113 chain 64215 chr1 249250621 + 145817344 145818392 MER11A 1151 + 0 1151 50903 68 3 17 111 2 0 9 1 0 5 0 1 74 12 9 175 24 40 5 1 0 6 0 1 11 0 12 22 0 1 6 1 0 51 0 1 57 6 9 11 3 4 29 96 159 97 8 7 87 1 0 66 chain 11974 chr1 249250621 + 145823538 145823764 L1PA16 3655 + 3421 3619 152311 142 56 33 7 5 0 16 chain 25357 chr1 249250621 + 145827564 145827861 AluSp 311 + 13 311 102908 199 0 1 98 chain 7857 chr1 249250621 + 145830033 145830253 L1MA8 2339 - 22 216 171953 18 51 35 7 1 0 37 30 24 38 4 1 34 chain 9819 chr1 249250621 + 145884458 145884571 L1PA7 6471 + 6357 6470 161496 113 chain 6349 chr1 249250621 + 145887150 145887230 L1MA7 2200 + 466 546 182384 80 chain 292530 chr1 249250621 + 145904628 145908902 L1PA10 4194 - 33 3944 13858 11 1 0 28 10 6 19 1 0 21 1 0 539 7 8 405 3 0 29 0 1 95 0 4 50 0 3 11 5 6 192 0 1 18 0 4 23 0 1 6 0 4 293 4 5 152 0 4 349 0 3 59 0 5 236 0 1 161 10 19 103 319 0 103 0 4 129 29 0 60 5 0 212 14 16 36 24 24 56 2 1 75 9 3 40 0 3 29 15 13 79 1 0 7 9 1 15 1 0 9 9 8 7 1 0 21 3 1 12 54 28 8 1 0 15 2 0 21 chain 44982 chr1 249250621 + 145913015 145913517 L1PA3long 6157 - 1341 1845 63078 144 0 1 138 0 1 220 chain 120777 chr1 249250621 + 145913522 145914863 L1PA3long 6157 + 4815 6157 30767 134 0 4 153 4 1 1050 chain 220142 chr1 249250621 + 145919957 145922471 L1PA5 6144 - 0 2506 17873 11 3 1 431 29 0 3 3 0 342 0 12 49 0 4 638 0 1 703 0 2 246 0 7 56 chain 4252 chr1 249250621 + 145922471 145922517 L1P3 4156 + 3940 3986 202667 46 chain 4098 chr1 249250621 + 145927758 145927837 Ricksha_c 1012 + 94 168 205983 44 8 7 7 2 0 10 2 0 6 chain 6667 chr1 249250621 + 145937157 145938618 Tigger7 736 - 277 732 179935 20 4 2 32 0 7 21 1294 286 36 10 5 22 7 9 15 chain 23688 chr1 249250621 + 145945852 145946130 AluSc5 308 - 31 308 112104 172 1 0 105 chain 3440 chr1 249250621 + 145951004 145951042 tRNA-Gly-GGG 71 + 9 47 216391 38 chain 4111 chr1 249250621 + 145963303 145963346 tRNA-Gln-CAG 43 + 0 43 205768 43 chain 6765 chr1 249250621 + 145964797 145964877 HY3 101 + 20 100 179203 80 chain 15603 chr1 249250621 + 145969269 145969433 U1 164 - 0 164 139573 164 chain 6755 chr1 249250621 + 145979033 145979107 tRNA-Asn-AAC 74 - 0 74 179289 74 chain 50736 chr1 249250621 + 145981633 145982224 L1PA7 6471 - 13 604 58475 591 chain 10947 chr1 249250621 + 145982899 145983227 MLT2B4 540 - 68 508 156420 21 36 37 13 118 230 96 6 5 38 chain 45415 chr1 249250621 + 146009550 146010064 LTR12C 1709 - 1177 1709 62575 231 3 21 280 chain 138429 chr1 249250621 + 146027301 146028955 L1PA6 6164 - 13 1670 26407 137 5 0 6 1 6 541 0 1 142 0 3 434 1 2 236 2 0 149 chain 200900 chr1 249250621 + 146041620 146044713 L1P2 5180 + 845 3231 19152 223 8 9 389 0 1 57 0 1 304 0 1 6 719 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 55554 chr1 249250621 + 146042681 146043326 L1PA4 6152 - 14 660 55383 61 5 6 579 chain 14028 chr1 249250621 + 146059361 146059540 L1PA6 6164 + 5921 6099 144468 90 1 2 80 2 0 6 chain 49977 chr1 249250621 + 146061523 146062181 PABL_A 660 + 1 652 59034 79 17 6 4 1 0 240 1 6 37 1 0 34 0 1 244 chain 87384 chr1 249250621 + 146068275 146069248 LTR5_Hs 974 - 0 974 40618 200 0 1 773 chain 10602 chr1 249250621 + 146111073 146111256 L1MA1 4479 + 4021 4190 157813 57 1 0 31 3 0 33 1 0 9 30 21 18 chain 4441 chr1 249250621 + 146133883 146133936 MLT1B 390 - 308 361 201440 53 chain 3916 chr1 249250621 + 146154035 146154195 MLT1B 390 + 0 154 208608 16 20 13 29 69 70 26 chain 200480 chr1 249250621 + 146235114 146238227 L1P2 5180 + 845 3231 19173 223 8 9 389 0 1 57 0 1 304 0 1 6 739 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 54561 chr1 249250621 + 146236196 146236840 L1PA4 6152 - 14 660 55988 61 5 6 551 1 2 26 chain 383195 chr1 249250621 + 146303637 146307751 L1PA2 6032 + 1915 6032 10660 2314 0 4 1650 1 0 149 chain 66929 chr1 249250621 + 146342448 146343449 LTR5_Hs 974 - 0 974 49674 130 49 27 34 7 7 58 0 1 32 15 16 9 1 2 100 16 17 18 0 2 59 0 4 65 16 0 170 6 7 216 chain 25856 chr1 249250621 + 146348596 146348906 AluSp 311 - 1 311 100625 310 chain 10602 chr1 249250621 + 146354323 146354506 L1MA1 4479 - 289 458 157814 18 30 21 9 1 0 33 3 0 31 1 0 57 chain 85005 chr1 249250621 + 146383502 146384490 LTR5_Hs 974 + 0 974 41509 285 1 3 485 0 1 67 29 12 121 chain 50206 chr1 249250621 + 146390618 146391271 PABL_A 660 - 8 659 58863 244 0 1 35 1 0 36 1 6 240 1 0 4 12 6 79 chain 14107 chr1 249250621 + 146393249 146393430 L1PA6 6164 - 65 243 144184 6 4 0 80 1 2 90 chain 200272 chr1 249250621 + 146414454 146417570 L1P2 5180 - 1949 4335 19187 27 0 1 107 0 1 300 0 4 262 0 1 609 0 1 71 742 0 17 0 1 305 0 1 56 0 1 389 8 9 223 chain 54626 chr1 249250621 + 146415841 146416485 L1PA4 6152 + 5492 6138 55954 26 1 2 551 5 6 61 chain 24358 chr1 249250621 + 146472203 146472501 AluY 311 + 0 292 108330 126 6 0 166 chain 3541 chr1 249250621 + 146476788 146476831 tRNA-Gln-CAG 43 - 0 43 214698 43 chain 488134 chr1 249250621 + 146478079 146484231 L1PA5 6144 + 1 6139 7435 127 2 16 65 13 12 24 74 73 144 36 17 44 1 2 7 0 2 52 1 0 214 0 17 26 0 3 6 3 0 72 1 0 10 1 4 14 25 0 51 2 0 162 13 4 341 0 1 2371 20 22 252 11 8 1133 0 4 238 0 1 441 1 4 154 chain 327692 chr1 249250621 + 146484257 146488189 L1PA6 6164 + 2212 6151 12282 121 0 1 539 2 7 303 10 8 37 2 1 18 1 0 120 1 2 530 0 1 332 0 1 410 2 0 236 1 2 437 0 2 140 0 1 541 1 6 6 5 0 137 chain 128252 chr1 249250621 + 146532859 146534323 SVA_B 1603 + 50 1597 28507 34 0 2 778 1 0 51 0 82 600 chain 534456 chr1 249250621 + 146535457 146541610 L1PA4 6152 + 6 6151 3658 571 1 0 257 17 0 322 0 3 170 0 3 5 27 24 448 0 1 722 0 1 158 0 1 2612 0 4 843 chain 6496 chr1 249250621 + 146544774 146544844 tRNA-His-CAY_ 70 + 0 70 181290 70 chain 6773 chr1 249250621 + 146556165 146556272 U1 164 - 2 133 179153 67 16 40 24 chain 39107 chr1 249250621 + 146562128 146563104 L1PB1 5432 + 4741 5324 70592 188 316 0 143 0 1 30 66 11 22 1 0 10 1 0 12 15 9 53 18 16 44 1 0 16 12 0 28 chain 49775 chr1 249250621 + 146569850 146570451 LTR13 1007 - 406 1006 59178 215 4 5 313 2 0 67 chain 74262 chr1 249250621 + 146574818 146575690 MER11D 897 + 0 897 46380 111 0 1 474 1 24 51 0 1 235 chain 71020 chr1 249250621 + 146577698 146578659 LTR5_Hs 974 - 0 974 47919 95 0 6 90 7 7 57 8 0 5 0 8 35 11 13 10 2 0 5 0 2 179 0 4 208 4 5 245 chain 14728 chr1 249250621 + 146594127 146594328 MER4A1 472 + 234 472 142173 80 0 35 45 6 8 70 chain 272660 chr1 249250621 + 146596410 146599432 L1PA3long 6157 - 0 3027 15037 669 0 4 1082 4 5 1267 chain 7570 chr1 249250621 + 146611552 146611645 L1P4 1494 - 1270 1362 173723 80 1 0 12 chain 5618 chr1 249250621 + 146612905 146612966 L1PA16 3655 + 3466 3527 188897 61 chain 29029 chr1 249250621 + 146619167 146619558 MLT2A1 477 + 0 393 88856 142 0 1 26 4 9 28 2 0 18 0 8 152 10 0 9 chain 47290 chr1 249250621 + 146619669 146620259 HERVL-int 5654 + 0 592 60972 52 0 1 41 7 8 490 chain 23350 chr1 249250621 + 146623835 146624097 L1PA3long 6157 + 5877 6144 113924 7 0 5 255 chain 5227 chr1 249250621 + 146660243 146660307 L1PA5 6144 + 6069 6134 192757 57 0 1 7 chain 406250 chr1 249250621 + 146662266 146666859 L1PA4 6152 - 0 4776 9904 13 0 3 957 0 174 1315 0 3 400 6 7 13 0 2 1889 chain 71779 chr1 249250621 + 146677148 146677949 L1PA5 6144 + 4784 5586 47574 585 0 1 216 chain 48664 chr1 249250621 + 146677951 146678497 L1PA5 6144 + 5592 6138 59983 546 chain 322251 chr1 249250621 + 146699620 146703293 L1PA4 6152 - 9 3692 12511 770 0 1 394 0 1 1079 1 2 205 0 3 401 0 1 19 0 2 747 0 1 57 chain 30829 chr1 249250621 + 146703305 146703677 L1PA4 6152 - 5780 6152 82814 372 chain 2988 chr1 249250621 + 146703763 146703798 MLT1J2 417 + 318 353 225297 35 chain 9747 chr1 249250621 + 146703898 146704069 LTR14B 630 + 0 382 161859 56 0 179 39 31 53 33 0 10 12 chain 148790 chr1 249250621 + 146704073 146705745 SVA_D 2077 + 11 2067 24784 531 0 40 338 1 38 34 0 1 43 0 2 54 6 309 169 1 0 36 0 2 459 chain 46770 chr1 249250621 + 146710444 146711001 LTR6B 557 + 0 557 61397 357 1 2 42 1 0 156 chain 82902 chr1 249250621 + 146711748 146712717 LTR5_Hs 974 + 0 974 42379 250 0 5 557 0 2 98 2 0 62 chain 32172 chr1 249250621 + 146712834 146713246 LTR7 482 + 0 482 80575 68 9 47 138 1 0 11 0 31 91 0 2 94 chain 4924 chr1 249250621 + 146731815 146731970 L1MC1 2226 - 29 163 195994 13 1 0 30 50 37 13 3 1 20 5 0 20 chain 234685 chr1 249250621 + 146777894 146780519 L1PA4 6152 + 3515 6152 17050 442 0 2 391 0 8 1487 0 2 305 chain 293182 chr1 249250621 + 146780531 146784544 L1PA7 6471 + 2670 6470 13810 102 0 6 111 6 10 5 0 1 395 0 6 136 0 3 102 20 30 34 0 1 334 0 2 61 5 14 4 0 1 208 2 1 42 0 4 66 4 0 29 3 5 94 2 1 85 317 2 348 8 78 125 28 1 504 0 3 160 0 6 336 8 6 280 4 13 45 chain 164286 chr1 249250621 + 146787917 146793302 L1PA8A 6298 + 77 3392 9000 21 45 32 18 0 3 6 2 1 13 1 0 6 1 0 12 2 0 11 11 8 13 1 0 8 1 0 5 2 1 7 1 0 10 10 5 6 2 0 49 1 0 16 8 0 76 2 0 18 1 0 11 4 2 77 1 0 32 0 2 24 0 24 24 5 4 155 0 1 325 0 4 4 0 3 21 0 1 79 2 1 48 1 4 100 7 4 68 0 3 247 0 4 52 1 3 138 0 1 325 1 0 117 313 0 73 4 0 70 2 1 5 0 1 26 18 0 58 1733 0 373 1 0 34 19 20 233 0 2 59 8 7 4 0 1 75 2 0 20 chain 544195 chr1 249250621 + 146793529 146799539 L1PA3long 6157 - 8 6157 2189 141 1 0 694 0 4 956 0 4 1289 0 1 362 0 1 1656 0 1 136 0 128 623 0 1 152 chain 86826 chr1 249250621 + 146799555 146802401 L1PA8A 6298 + 3392 6282 9000 13 3 14 263 0 4 185 0 1 135 5 0 687 2 1 22 4 9 101 8 25 231 1 2 151 1 2 80 1 2 167 1 4 74 4 6 18 0 1 40 0 1 294 0 2 355 chain 6535 chr1 249250621 + 146802885 146802978 MER33 330 - 36 133 180956 76 1 5 16 chain 525088 chr1 249250621 + 146814747 146820865 L1PA5 6144 + 3 6141 4680 329 14 15 355 2 1 20 1 0 239 2 3 4 1 0 111 0 3 1077 0 24 129 2 1 67 0 3 155 3 0 406 0 2 211 1 0 18 2 0 341 5 6 129 1 0 270 0 2 425 0 4 73 9 0 982 1 0 733 chain 86555 chr1 249250621 + 146830428 146831710 L1PA10 4194 + 236 1465 40915 6 1 0 8 1 0 22 2 0 9 0 1 4 1 0 8 37 12 8 1 0 21 2 0 21 1 0 7 1 0 7 1 0 10 1 0 7 12 0 8 11 9 84 2 0 97 5 0 299 0 3 50 14 15 513 chain 214923 chr1 249250621 + 146831710 146834282 L1PA7 6471 + 3895 6470 18170 923 0 4 802 1 0 683 2 1 65 0 1 96 chain 86941 chr1 249250621 + 146845898 146846849 L1PA3long 6157 - 1149 2100 40767 951 chain 102269 chr1 249250621 + 146846849 146847992 L1PA3long 6157 + 5015 6157 36203 163 2 1 978 chain 29107 chr1 249250621 + 146864736 146865048 AluYa5 310 - 0 310 88518 163 2 0 147 chain 540791 chr1 249250621 + 146874114 146880259 L1PA4 6152 + 0 6151 2690 460 6 0 116 1 0 659 0 1 122 0 1 24 0 1 60 7 11 569 0 1 550 0 3 1089 1 2 2241 0 2 102 1 0 137 chain 6871 chr1 249250621 + 146891933 146892015 HY3 101 - 7 89 178421 82 chain 549788 chr1 249250621 + 146894945 146900972 L1PA2 6032 + 0 6027 1473 5866 5 0 7 0 5 149 chain 81349 chr1 249250621 + 146914453 146915373 L1PA5 6144 + 4421 5345 43025 876 0 4 44 chain 68027 chr1 249250621 + 146915373 146916151 L1PA5 6144 + 5350 6136 49236 333 0 6 211 0 2 234 chain 10624 chr1 249250621 + 146921202 146921322 L1PA5 6144 + 5174 5294 157713 120 chain 71966 chr1 249250621 + 146921323 146922148 L1PA5 6144 + 5294 6131 47489 330 0 1 132 0 1 232 2 12 129 chain 183792 chr1 249250621 + 146931309 146933345 L1PA3long 6157 + 4113 6157 20607 247 0 4 924 0 4 865 chain 38075 chr1 249250621 + 146949967 146950508 LTR3B_ 500 - 0 500 72023 26 37 0 65 0 2 38 1 0 14 0 1 56 7 0 133 10 10 4 0 1 150 chain 3115 chr1 249250621 + 146968889 146968927 MER5B 177 - 19 57 222647 38 chain 25494 chr1 249250621 + 147038252 147038559 AluY 311 + 0 306 102248 43 1 0 89 0 1 123 1 0 50 chain 21930 chr1 249250621 + 147043753 147044062 AluY 311 + 16 311 120499 47 9 1 69 14 9 119 4 3 47 chain 24984 chr1 249250621 + 147143250 147143558 AluY 311 + 12 304 104889 114 16 0 178 chain 50305 chr1 249250621 + 147149918 147150509 LTR10C 591 - 0 591 58789 81 0 2 248 1 0 177 0 1 53 2 0 29 chain 119443 chr1 249250621 + 147151968 147153456 LTR12C 1709 - 0 1709 31250 60 0 1 90 1 0 4 12 13 16 9 1 205 1 0 91 0 4 104 6 4 4 1 0 25 1 83 12 11 39 105 0 118 730 chain 491514 chr1 249250621 + 147177130 147183985 L1PA6 6164 - 2 5827 7294 53 0 1 115 2 0 6 7 9 560 0 1 565 5 0 635 4 0 606 4 0 249 0 1 720 0 20 287 2 3 107 0 7 402 34 5 44 1029 0 523 1 2 533 5 12 70 0 1 111 4 5 172 chain 88294 chr1 249250621 + 147181541 147182566 LTR5A 1029 - 1 1029 40265 237 0 1 257 0 2 220 0 1 163 1 0 147 chain 22138 chr1 249250621 + 147185368 147185622 L1PA5 6144 - 12 266 119627 254 chain 31179 chr1 249250621 + 147187698 147188331 MER4A 717 - 0 717 82201 67 211 282 31 0 11 71 1 3 243 1 0 4 0 1 4 chain 41331 chr1 249250621 + 147188360 147188947 MER41B 635 - 7 635 67498 112 5 6 227 40 80 76 0 1 33 1 0 93 chain 48833 chr1 249250621 + 147191944 147192579 MER41B 635 + 0 635 59852 92 1 0 33 1 2 334 0 7 4 8 0 35 0 1 127 chain 75983 chr1 249250621 + 147205979 147206938 LTR5_Hs 974 - 0 974 45493 103 2 0 37 8 15 322 0 1 6 32 0 11 0 32 161 0 1 246 0 4 23 0 4 8 chain 23788 chr1 249250621 + 147274962 147275264 AluSp 311 + 11 307 111544 52 10 4 240 chain 3426 chr1 249250621 + 147286817 147286858 MER34C_ 573 + 28 69 216653 41 chain 4544 chr1 249250621 + 147296176 147296230 MamRep1879 211 - 84 138 200306 54 chain 361429 chr1 249250621 + 147298667 147304497 L1PB1 5432 - 12 4828 11331 16 1 0 13 1 0 21 0 9 15 2 0 14 8 5 10 0 2 7 18 8 4 1 0 16 1 0 38 6 5 16 2 1 51 2 0 11 16 11 9 1 0 24 17 15 46 16 16 132 15 0 287 5 0 12 3 7 130 1 0 4 0 1 251 3 2 12 0 14 99 8 0 69 9 19 30 0 1 42 0 1 186 26 16 132 0 1 490 0 1 41 312 0 215 1 0 191 0 9 151 6 0 121 359 0 952 20 11 5 2 0 7 1 0 72 4 0 31 314 12 676 chain 20677 chr1 249250621 + 147306022 147306419 LTR7 482 + 0 474 125044 69 29 17 15 15 14 17 49 132 25 0 1 12 0 4 113 12 14 41 chain 327566 chr1 249250621 + 147326707 147330807 L1P3 4156 + 3 4137 12288 237 22 21 59 1 0 10 0 10 68 0 1 22 17 18 69 2 13 440 12 16 103 6 2 7 0 4 182 13 14 180 0 1 615 4 6 19 0 1 365 1 0 30 0 2 110 1 2 4 1 0 63 0 1 47 0 1 312 0 1 550 1 0 149 0 3 322 7 8 16 11 8 22 chain 73870 chr1 249250621 + 147332411 147333420 L1PA7 6471 + 5572 6468 46579 393 116 6 482 4 1 14 chain 511910 chr1 249250621 + 147333768 147339888 L1PA6 6164 + 0 6161 5986 151 10 11 407 1 0 611 1 2 759 0 1 234 0 13 201 0 2 227 5 25 540 5 6 333 0 1 161 0 1 8 1 0 258 0 1 594 0 3 58 0 1 69 0 1 443 10 2 194 0 4 27 0 1 802 1 0 9 chain 230526 chr1 249250621 + 147345149 147347728 L1PA4 6152 - 1 2585 17282 112 0 1 1687 0 4 780 chain 5585 chr1 249250621 + 147352219 147352686 L1ME1 1623 - 138 622 189223 39 6 0 13 67 92 26 231 232 32 39 36 14 chain 5547 chr1 249250621 + 147397333 147397484 L1MA8 2339 + 2120 2265 189592 21 22 24 33 6 0 11 25 24 24 1 0 8 chain 25257 chr1 249250621 + 147399718 147400014 AluSp 311 - 1 298 103434 97 0 1 199 chain 64427 chr1 249250621 + 147409175 147410223 MER11A 1151 - 0 1151 50828 66 1 0 87 8 7 97 96 159 29 3 4 11 6 9 57 0 1 53 1 0 4 0 1 22 0 12 11 0 1 6 1 0 5 24 40 175 12 9 74 0 1 5 1 0 9 2 0 111 3 17 68 chain 4218 chr1 249250621 + 147412665 147412717 MER58A 224 - 0 51 204319 18 1 0 33 chain 181427 chr1 249250621 + 147420873 147423219 SVA_D 2077 - 0 2077 20853 18 2 0 578 49 0 80 4 0 13 24 0 4 1 0 37 0 1 135 224 0 173 0 2 82 0 36 10 2 0 458 0 1 424 3 0 25 chain 2009 chr1 249250621 + 147421493 147421520 SVA_D 2077 - 1070 1097 177507 27 chain 9682 chr1 249250621 + 147421818 147421968 SVA_D 2077 - 993 1227 72207 45 6 95 27 3 1 13 2 0 19 6 5 29 chain 3473 chr1 249250621 + 147421968 147422006 SVA_D 2077 - 791 829 149082 38 chain 9819 chr1 249250621 + 147426157 147426270 L1PA7 6471 + 6357 6470 161495 113 chain 6349 chr1 249250621 + 147428849 147428929 L1MA7 2200 + 466 546 182383 80 chain 292529 chr1 249250621 + 147446333 147450608 L1PA10 4194 - 33 3944 13859 11 1 0 28 10 6 19 1 0 21 1 0 539 7 8 405 3 0 29 0 1 95 0 4 50 0 3 11 5 6 192 0 1 18 0 4 23 0 1 6 0 4 293 4 5 152 0 4 349 0 3 59 0 5 236 0 1 161 10 19 103 320 0 103 0 4 129 29 0 60 5 0 212 14 16 36 24 24 56 2 1 75 9 3 40 0 3 29 15 13 79 1 0 7 9 1 15 1 0 9 9 8 7 1 0 21 3 1 12 54 28 8 1 0 15 2 0 21 chain 44982 chr1 249250621 + 147454721 147455223 L1PA3long 6157 - 1341 1845 63077 144 0 1 138 0 1 220 chain 120991 chr1 249250621 + 147455228 147456569 L1PA3long 6157 + 4815 6157 30694 134 0 4 153 4 1 1050 chain 220142 chr1 249250621 + 147461663 147464177 L1PA5 6144 - 0 2506 17872 11 3 1 431 29 0 3 3 0 342 0 12 49 0 4 638 0 1 703 0 2 246 0 7 56 chain 4252 chr1 249250621 + 147464177 147464223 L1P3 4156 + 3940 3986 202668 46 chain 4098 chr1 249250621 + 147469464 147469543 Ricksha_c 1012 + 94 168 205982 44 8 7 7 2 0 10 2 0 6 chain 6667 chr1 249250621 + 147478868 147480329 Tigger7 736 - 277 732 179934 20 4 2 32 0 7 21 1294 286 36 10 5 22 7 9 15 chain 23688 chr1 249250621 + 147487565 147487843 AluSc5 308 - 31 308 112103 172 1 0 105 chain 3440 chr1 249250621 + 147492722 147492760 tRNA-Gly-GGG 71 + 9 47 216390 38 chain 4111 chr1 249250621 + 147505037 147505080 tRNA-Gln-CAG 43 + 0 43 205767 43 chain 6765 chr1 249250621 + 147506531 147506611 HY3 101 + 20 100 179202 80 chain 15603 chr1 249250621 + 147511003 147511167 U1 164 - 0 164 139572 164 chain 6755 chr1 249250621 + 147520766 147520840 tRNA-Asn-AAC 74 - 0 74 179288 74 chain 50586 chr1 249250621 + 147523378 147523965 L1PA7 6471 - 13 600 58594 587 chain 10947 chr1 249250621 + 147524650 147524978 MLT2B4 540 - 68 508 156419 21 36 37 13 118 230 96 6 5 38 chain 45369 chr1 249250621 + 147551327 147551841 LTR12C 1709 - 1177 1709 62636 231 3 21 280 chain 138545 chr1 249250621 + 147569081 147570736 L1PA6 6164 - 13 1670 26387 137 5 0 6 1 6 541 0 1 143 0 2 434 1 2 236 2 0 149 chain 200647 chr1 249250621 + 147583395 147586488 L1P2 5180 + 845 3231 19163 223 8 9 389 0 1 57 0 1 304 0 1 6 719 0 82 0 1 609 0 1 264 0 4 298 0 1 107 0 1 27 chain 55554 chr1 249250621 + 147584456 147585101 L1PA4 6152 - 14 660 55382 61 5 6 579 chain 14028 chr1 249250621 + 147601198 147601377 L1PA6 6164 + 5921 6099 144469 90 1 2 80 2 0 6 chain 49977 chr1 249250621 + 147603360 147604018 PABL_A 660 + 1 652 59033 79 17 6 4 1 0 240 1 6 37 1 0 34 0 1 244 chain 87384 chr1 249250621 + 147610111 147611084 LTR5_Hs 974 - 0 974 40617 200 0 1 773 chain 10602 chr1 249250621 + 147652906 147653089 L1MA1 4479 + 4021 4190 157812 57 1 0 31 3 0 33 1 0 9 30 21 18 chain 4441 chr1 249250621 + 147675715 147675768 MLT1B 390 - 308 361 201439 53 chain 3916 chr1 249250621 + 147695860 147696020 MLT1B 390 + 0 154 208607 16 20 13 29 69 70 26 chain 7312 chr1 249250621 + 147719028 147719104 tRNA-Asn-AAT 76 + 0 76 175359 76 chain 3980 chr1 249250621 + 147737410 147737453 tRNA-Gln-CAG 43 - 0 43 207693 43 chain 6496 chr1 249250621 + 147753472 147753542 tRNA-His-CAY_ 70 + 0 70 181289 70 chain 6496 chr1 249250621 + 147774844 147774914 tRNA-His-CAY_ 70 - 0 70 181293 70 chain 4957 chr1 249250621 + 147781038 147781099 tRNA-Glu-GAA 70 - 9 70 195627 61 chain 8895 chr1 249250621 + 147797401 147797507 LTR2B 499 - 1 107 166162 106 chain 3980 chr1 249250621 + 147800936 147800979 tRNA-Gln-CAG 43 + 0 43 207692 43 chain 6901 chr1 249250621 + 147802439 147802517 HY3 101 + 22 100 178177 78 chain 6261 chr1 249250621 + 147827697 147827771 HY3 101 + 20 95 183077 15 0 1 59 chain 14166 chr1 249250621 + 147834509 147834665 U1 164 - 8 164 143991 156 chain 13688 chr1 249250621 + 147860641 147860803 U1 164 - 0 164 145635 22 1 3 139 chain 32443 chr1 249250621 + 147865082 147865862 MER51D 577 + 104 577 80125 35 2 6 222 319 12 11 4 0 109 1 0 8 3 1 12 11 14 43 chain 7234 chr1 249250621 + 147867719 147867812 LTR24C 604 + 71 164 175870 93 chain 6148 chr1 249250621 + 147877536 147877610 tRNA-Asn-AAC 74 + 0 74 184005 74 chain 123896 chr1 249250621 + 147910510 147912080 THE1B-int 1605 + 0 1599 29733 25 0 1 404 1 26 219 0 1 4 0 2 274 3 2 534 0 2 101 1 0 4 chain 45240 chr1 249250621 + 147913111 147913618 L1PA3long 6157 - 5 511 62780 427 1 0 79 chain 29163 chr1 249250621 + 147913618 147913936 L1PA3long 6157 + 5351 5669 88238 318 chain 50427 chr1 249250621 + 147933560 147934115 L1PA3long 6157 + 5601 6156 58691 555 chain 103638 chr1 249250621 + 147941502 147942746 L1PA6 6164 - 18 1262 35817 451 5 1 296 0 1 75 0 4 275 1 0 141 chain 21813 chr1 249250621 + 147947692 147947977 L1PA16 3655 + 3308 3590 120965 270 3 0 12 chain 28041 chr1 249250621 + 147967272 147967635 THE1B 368 - 0 368 92852 204 3 2 120 0 5 7 0 1 29 chain 153768 chr1 249250621 + 147972522 147974264 L1PA5 6144 + 4400 6142 24116 222 1 0 448 0 1 222 0 1 701 2 1 146 chain 12438 chr1 249250621 + 147994145 147994313 U1 164 + 0 164 150502 24 10 7 16 1 0 117 chain 13872 chr1 249250621 + 147996347 147996567 LOR1b 457 + 0 254 145000 24 6 17 50 4 3 25 0 13 16 3 1 21 0 13 71 chain 6624 chr1 249250621 + 148000804 148000878 tRNA-Asn-AAC 74 + 0 74 180282 74 chain 3092 chr1 249250621 + 148002434 148002466 MER51D 577 - 8 40 223074 32 chain 199856 chr1 249250621 + 148018232 148021341 L1P2 5180 + 845 3231 19223 223 8 9 389 0 1 57 0 1 304 0 1 6 734 0 82 0 1 408 1 0 201 11 12 251 0 4 300 0 1 107 0 1 27 chain 55853 chr1 249250621 + 148019308 148019953 L1PA4 6152 - 14 660 55211 61 5 6 579 chain 50602 chr1 249250621 + 148177808 148178363 L1PA3long 6157 + 5601 6156 58577 555 chain 102435 chr1 249250621 + 148185768 148187013 L1PA6 6164 - 18 1262 36154 56 1 0 395 5 1 296 0 1 81 0 4 269 1 0 141 chain 22057 chr1 249250621 + 148191976 148192261 L1PA16 3655 + 3308 3590 119988 270 3 0 12 chain 28377 chr1 249250621 + 148213906 148214269 THE1B 368 - 0 368 91673 204 3 2 120 0 5 7 0 1 29 chain 153311 chr1 249250621 + 148219172 148220912 L1PA5 6144 + 4400 6141 24185 222 1 0 448 0 1 222 0 1 847 chain 13284 chr1 249250621 + 148241464 148241624 U1 164 + 0 159 147152 45 1 0 114 chain 7139 chr1 249250621 + 148248114 148248188 tRNA-Asn-AAC 74 + 0 74 176480 74 chain 3092 chr1 249250621 + 148249753 148249785 MER51D 577 - 8 40 223073 32 chain 198568 chr1 249250621 + 148330854 148333959 L1P2 5180 + 845 3231 19312 90 0 6 3 6 0 124 8 9 389 0 1 57 0 1 304 0 1 5 734 0 83 0 1 515 0 3 91 0 1 264 0 4 298 0 1 107 0 1 27 chain 55169 chr1 249250621 + 148331930 148332574 L1PA4 6152 - 14 659 55553 61 5 6 578 chain 14750 chr1 249250621 + 148348678 148348855 L1PA6 6164 + 5921 6099 142103 90 1 2 86 chain 49596 chr1 249250621 + 148350832 148351484 PABL_A 660 + 1 654 59323 79 13 6 4 1 0 240 1 6 36 1 0 36 0 5 241 chain 28580 chr1 249250621 + 148351798 148352096 AluYa8 305 - 7 305 90821 298 chain 4859 chr1 249250621 + 148354791 148354999 L1ME2z 1083 + 654 836 196687 30 17 14 32 1 2 14 98 74 16 chain 86992 chr1 249250621 + 148356349 148357322 LTR5_Hs 974 - 0 974 40787 200 0 1 773 chain 43888 chr1 249250621 + 148513558 148514103 MLT2A2 560 + 14 560 64347 192 0 1 353 chain 25542 chr1 249250621 + 148516855 148517201 THE1C 375 - 25 374 102040 142 16 18 183 0 1 5 chain 27439 chr1 249250621 + 148520404 148520738 L1PA5 6144 + 5794 6128 94853 190 7 0 15 0 7 122 chain 13122 chr1 249250621 + 148531059 148531217 L1PA2 6032 - 0 154 147757 6 4 0 148 chain 26496 chr1 249250621 + 148540857 148541195 AluY 311 + 0 309 98057 18 2 0 142 27 0 149 chain 17788 chr1 249250621 + 148542118 148542407 MER1B 344 + 43 317 133456 177 4 0 31 47 36 30 chain 87029 chr1 249250621 + 148565785 148566758 LTR5_Hs 974 + 0 974 40768 773 0 1 200 chain 50527 chr1 249250621 + 148572815 148573470 PABL_A 660 - 8 659 58635 244 0 1 35 1 0 36 1 6 240 1 0 4 14 6 79 chain 13814 chr1 249250621 + 148575546 148575725 L1PA6 6164 - 65 243 145198 6 2 0 80 1 2 90 chain 201001 chr1 249250621 + 148584112 148587220 L1P2 5180 - 1949 4335 19142 27 0 1 107 0 1 300 0 4 262 0 1 91 0 3 518 0 1 68 737 0 17 0 1 304 0 1 57 0 1 389 8 9 223 chain 55124 chr1 249250621 + 148585496 148586141 L1PA4 6152 + 5492 6138 55628 579 5 6 61 chain 2528 chr1 249250621 + 148596726 148596759 MER51D 577 + 537 569 232818 23 1 0 9 chain 7008 chr1 249250621 + 148598313 148598387 tRNA-Asn-AAC 74 - 0 74 177422 74 chain 13818 chr1 249250621 + 148602646 148602869 LOR1b 457 - 200 457 145186 74 0 13 21 3 1 16 0 13 25 4 3 50 6 17 24 chain 153261 chr1 249250621 + 148625626 148627374 L1PA5 6144 - 2 1744 24193 749 7 0 99 0 1 222 0 1 448 1 0 222 chain 28303 chr1 249250621 + 148632274 148632637 THE1B 368 + 0 368 91934 27 0 1 9 0 5 120 3 2 204 chain 14643 chr1 249250621 + 148638865 148639050 AluSp 311 + 117 300 142444 15 2 0 168 chain 21843 chr1 249250621 + 148651328 148651613 L1PA16 3655 - 65 347 120845 12 3 0 270 chain 24579 chr1 249250621 + 148651965 148652253 AluSc5 308 + 0 289 107089 140 0 1 148 chain 102443 chr1 249250621 + 148656579 148657822 L1PA6 6164 + 4902 6146 36150 141 1 0 271 1 5 78 0 1 296 5 1 89 0 1 361 chain 50402 chr1 249250621 + 148734850 148735506 PABL_A 660 - 8 659 58712 244 0 1 35 1 0 36 1 6 240 1 0 4 15 6 79 chain 14028 chr1 249250621 + 148737633 148737812 L1PA6 6164 - 65 243 144470 6 2 0 80 1 2 90 chain 197246 chr1 249250621 + 148746199 148749264 L1P2 5180 - 1949 4335 19405 27 0 1 107 0 1 300 0 4 262 0 1 29 0 1 61 0 3 518 0 1 68 734 0 17 0 1 304 0 1 57 0 1 225 0 39 125 8 9 223 chain 55124 chr1 249250621 + 148747582 148748227 L1PA4 6152 + 5492 6138 55627 579 5 6 61 chain 2878 chr1 249250621 + 148758770 148758802 MER51D 577 + 537 569 227407 32 chain 7008 chr1 249250621 + 148760355 148760429 tRNA-Asn-AAC 74 - 0 74 177421 74 chain 153148 chr1 249250621 + 148787655 148789403 L1PA5 6144 - 2 1744 24208 749 7 0 99 0 1 222 0 1 448 1 0 222 chain 28303 chr1 249250621 + 148794306 148794669 THE1B 368 + 0 368 91933 27 0 1 9 0 5 120 3 2 204 chain 14370 chr1 249250621 + 148800880 148801062 AluSp 311 + 117 297 143302 15 2 0 165 chain 22057 chr1 249250621 + 148813332 148813617 L1PA16 3655 - 65 347 119989 12 3 0 270 chain 24579 chr1 249250621 + 148813969 148814257 AluSc5 308 + 0 289 107088 140 0 1 148 chain 102482 chr1 249250621 + 148818496 148819739 L1PA6 6164 + 4902 6146 36135 141 1 0 271 1 5 78 0 1 296 5 1 89 0 1 361 chain 5266 chr1 249250621 + 148907124 148907218 MER20 218 + 41 136 192356 42 23 24 29 chain 23539 chr1 249250621 + 148935404 148935695 AluSp 311 - 9 301 112912 25 6 8 144 1 0 115 chain 21932 chr1 249250621 + 149024724 149025062 THE1B 368 - 0 362 120490 118 42 52 29 1 0 110 0 15 38 chain 553892 chr1 249250621 + 149052759 149058793 L1PA2 6032 - 0 6030 962 224 9 1 1577 0 4 4224 chain 12614 chr1 249250621 + 149070187 149070464 LTR12C 1709 + 932 1183 149792 10 1 0 111 68 0 33 30 73 24 chain 995 chr1 249250621 + 149070335 149070367 LTR12C 1709 + 651 683 202536 32 chain 492123 chr1 249250621 + 149071940 149078092 L1PA6 6164 - 13 6164 7263 324 0 1 365 0 1 144 0 4 662 2 1 455 1 0 950 0 4 50 0 1 55 3 4 752 1 2 46 1 0 604 1 0 4 8 2 707 2 0 196 1 18 205 55 54 91 19 0 22 4 5 422 chain 3060 chr1 249250621 + 149079363 149079400 tRNA-Gln-CAG 43 + 0 37 223825 37 chain 195182 chr1 249250621 + 149097193 149099560 L1P2 5180 + 863 3225 19568 285 0 1 61 22 23 9 1 0 71 6 1 35 7 8 83 1 0 325 0 1 58 4 3 1362 1 0 36 chain 20718 chr1 249250621 + 149114357 149114597 L1PA6 6164 + 5921 6161 124895 240 chain 45864 chr1 249250621 + 149116384 149117037 PABL_A 660 + 1 652 62164 79 19 12 142 44 0 9 0 44 44 0 5 316 chain 162294 chr1 249250621 + 149131768 149134273 SVA_E 1901 + 1 1898 23023 152 1 0 492 0 40 132 1 0 26 1 0 80 630 0 102 0 77 131 92 0 665 chain 7852 chr1 249250621 + 149132705 149132821 SVA_F 1814 + 893 1024 84839 53 1 16 62 chain 31551 chr1 249250621 + 149132821 149133267 SVA_F 1814 + 664 1219 81563 65 0 169 50 76 14 214 0 1 37 0 1 4 chain 2098 chr1 249250621 + 149132936 149132967 SVA_F 1814 + 1139 1169 84839 26 1 0 4 chain 3077 chr1 249250621 + 149132967 149133012 SVA_F 1814 + 1043 1089 108015 38 0 1 7 chain 7037 chr1 249250621 + 149133516 149133604 SVA_E 1901 + 931 1025 136994 35 7 13 46 chain 90914 chr1 249250621 + 149141982 149143062 L1PA5 6144 + 5039 6123 39321 131 23 8 96 0 1 592 0 17 145 0 1 93 chain 68216 chr1 249250621 + 149151029 149152056 MER11A 1151 - 8 1102 49153 74 1 3 78 6 7 60 0 1 37 18 0 21 6 13 13 25 1 145 5 7 66 6 7 71 0 1 58 10 12 27 0 1 146 4 0 60 0 4 31 0 91 59 chain 6385 chr1 249250621 + 149155827 149155897 tRNA-His-CAY_ 70 - 0 70 182145 70 chain 5983 chr1 249250621 + 149161627 149161696 tRNA-Glu-GAA 70 - 0 69 185412 69 chain 3980 chr1 249250621 + 149186124 149186167 tRNA-Gln-CAG 43 + 0 43 207691 43 chain 6979 chr1 249250621 + 149187602 149187682 HY3 101 + 20 100 177611 80 chain 14134 chr1 249250621 + 149194105 149194269 U1 164 - 0 164 144088 164 chain 172478 chr1 249250621 + 149196673 149198799 SVA_D 2077 + 6 2077 21764 15 14 2 537 0 40 125 0 3 33 3 0 155 2 38 64 48 0 16 2 4 42 78 0 144 1 2 162 0 1 4 1 0 583 0 4 97 chain 3900 chr1 249250621 + 149197621 149197669 SVA_D 2077 + 1372 1421 71296 47 0 1 1 chain 5850 chr1 249250621 + 149197729 149197801 SVA_D 2077 + 1481 1552 71296 61 1 0 10 chain 15725 chr1 249250621 + 149224057 149224221 U1 164 - 0 164 139192 164 chain 33955 chr1 249250621 + 149228545 149229020 MER51D 577 + 104 577 77688 34 3 7 246 3 0 108 1 0 8 3 1 12 5 6 8 1 0 43 chain 6783 chr1 249250621 + 149230569 149230643 tRNA-Asn-AAC 74 - 0 74 179085 74 chain 157531 chr1 249250621 + 149246528 149248255 L1PA3long 6157 - 8 1735 23657 1727 chain 4504 chr1 249250621 + 149278784 149278855 tRNA-Glu-GAA 70 - 0 70 200742 21 10 9 40 chain 6188 chr1 249250621 + 149284502 149284575 tRNA-Asn-AAC 74 - 0 73 183678 73 chain 5514 chr1 249250621 + 149294673 149294736 tRNA-Gly-GGG 71 - 8 71 189910 63 chain 6750 chr1 249250621 + 149298554 149298627 tRNA-Val-GTG 73 - 0 73 179327 73 chain 70771 chr1 249250621 + 149304182 149305534 L1PA17 2846 + 1625 2675 48028 195 361 51 28 0 1 211 2 1 98 0 1 85 0 13 59 3 6 142 14 8 9 1 0 59 2 0 8 1 3 29 1 0 17 1 0 26 chain 6167 chr1 249250621 + 149323340 149323420 MADE1 96 + 0 96 183820 32 1 17 47 chain 29308 chr1 249250621 + 149337470 149337776 AluYa5 310 - 4 310 87524 306 chain 28598 chr1 249250621 + 149350914 149351219 AluYb9 318 + 0 305 90745 305 chain 41561 chr1 249250621 + 149360473 149361079 MER4B 649 + 0 633 67204 25 1 0 132 0 42 17 0 2 8 16 0 39 8 0 79 7 31 46 2 0 5 13 0 138 1 0 69 chain 45695 chr1 249250621 + 149362059 149362689 MER41B 635 - 0 635 62318 29 3 5 73 1 0 19 0 1 97 5 7 15 2 1 214 7 9 35 1 2 36 1 0 92 chain 48735 chr1 249250621 + 149362722 149363412 LTR30 714 - 0 703 59926 22 1 0 31 15 19 9 1 3 50 2 3 28 22 23 5 1 0 164 0 2 101 6 11 232 chain 39500 chr1 249250621 + 149381952 149382520 LTR61 567 + 0 558 70022 17 10 0 38 17 11 156 7 10 17 0 1 7 1 0 17 0 6 217 0 1 20 3 0 10 2 1 29 chain 16351 chr1 249250621 + 149403471 149403680 MER41A 554 - 0 214 137342 81 0 5 128 chain 9999 chr1 249250621 + 149410777 149410929 Tigger4b 360 - 2 163 160589 33 19 28 100 chain 28639 chr1 249250621 + 149411360 149411664 AluYa5 310 - 6 310 90564 304 chain 7475 chr1 249250621 + 149411666 149411836 Tigger4 2445 - 2150 2302 174309 59 5 1 13 2 0 11 7 6 23 13 6 5 2 0 12 1 0 10 1 0 6 chain 30262 chr1 249250621 + 149417851 149418168 AluYb9 318 + 0 317 84031 317 chain 27348 chr1 249250621 + 149456572 149456883 AluSp 311 - 0 311 95121 311 chain 12554 chr1 249250621 + 149458692 149458880 Tigger1 2417 + 2221 2404 150026 35 9 8 73 0 1 15 1 0 9 4 0 42 chain 13475 chr1 249250621 + 149511835 149512055 LOR1b 457 - 203 457 146434 71 0 13 21 3 1 16 0 13 25 4 3 50 10 21 20 chain 12797 chr1 249250621 + 149514089 149514256 U1 164 - 0 164 149062 119 1 0 14 9 7 24 chain 153506 chr1 249250621 + 149534112 149535854 L1PA5 6144 - 2 1744 24156 146 2 1 707 0 1 216 0 1 448 1 0 222 chain 21813 chr1 249250621 + 149560450 149560735 L1PA16 3655 - 65 347 120966 12 3 0 270 chain 23601 chr1 249250621 + 149561098 149561375 AluSc5 308 + 11 289 112583 129 0 1 148 chain 101553 chr1 249250621 + 149565692 149566936 L1PA6 6164 + 4902 6146 36383 84 0 2 5 1 0 4 6 5 41 1 0 269 0 4 81 0 1 296 5 1 451 chain 47787 chr1 249250621 + 149574322 149574867 L1PA3long 6157 - 1 556 60625 490 7 17 48 chain 28857 chr1 249250621 + 149594489 149594807 L1PA3long 6157 - 488 806 89640 318 chain 46059 chr1 249250621 + 149594807 149595313 L1PA3long 6157 + 5646 6152 61989 506 chain 36951 chr1 249250621 + 149596273 149596865 MER4D1 891 + 0 635 73584 175 21 4 19 0 13 111 5 6 51 11 17 20 8 28 87 0 12 9 14 19 27 0 7 20 4 0 10 chain 8271 chr1 249250621 + 149598773 149598877 LTR24C 604 + 65 169 169567 104 chain 6148 chr1 249250621 + 149608608 149608682 tRNA-Asn-AAC 74 + 0 74 184004 74 chain 31484 chr1 249250621 + 149613936 149614376 MER51D 577 + 104 558 81669 26 0 5 10 1 0 177 0 5 63 1 0 45 7 17 47 1 0 8 6 4 25 2 1 21 chain 6427 chr1 249250621 + 149615616 149615690 tRNA-Asn-AAC 74 - 0 74 181814 74 chain 29574 chr1 249250621 + 149619228 149619664 LTR7 482 - 7 482 86301 91 0 2 74 29 62 125 16 20 101 chain 4729 chr1 249250621 + 149664354 149664425 tRNA-Glu-GAA 70 - 0 70 198178 21 10 9 40 chain 6066 chr1 249250621 + 149670056 149670129 tRNA-Asn-AAC 74 - 0 73 184701 73 chain 5703 chr1 249250621 + 149674789 149674863 MLT1A0 366 - 40 115 188091 49 0 1 25 chain 6073 chr1 249250621 + 149680213 149680280 tRNA-Gly-GGG 71 - 4 71 184633 67 chain 6531 chr1 249250621 + 149684087 149684161 tRNA-Val-GTG 73 - 0 73 181005 32 1 0 41 chain 70627 chr1 249250621 + 149689710 149691056 L1PA17 2846 + 1625 2675 48099 195 361 51 28 0 1 211 2 1 98 0 1 84 0 13 60 0 9 139 14 8 9 1 0 59 2 0 8 1 3 29 1 0 17 1 0 26 chain 6167 chr1 249250621 + 149708869 149708949 MADE1 96 + 0 96 183819 32 1 17 47 chain 40633 chr1 249250621 + 149745427 149746024 MER4B 649 + 0 633 68392 25 1 0 132 0 42 17 0 2 12 8 1 34 8 0 79 7 31 46 19 4 139 1 0 69 chain 45851 chr1 249250621 + 149746990 149747619 MER41B 635 - 0 635 62178 32 0 2 73 1 0 19 0 1 97 5 7 18 1 0 120 1 2 90 7 9 35 1 2 36 1 0 92 chain 48735 chr1 249250621 + 149747652 149748342 LTR30 714 - 0 703 59925 22 1 0 31 15 19 9 1 3 50 2 3 28 22 23 5 1 0 164 0 2 101 6 11 232 chain 39031 chr1 249250621 + 149766876 149767444 LTR61 567 + 0 558 70691 17 10 0 38 17 11 156 7 10 17 0 1 7 1 0 17 0 6 216 1 2 20 3 0 10 2 1 29 chain 16768 chr1 249250621 + 149788168 149788380 MER41A 554 - 0 218 136200 81 0 5 124 0 1 7 chain 21637 chr1 249250621 + 149788605 149788916 AluY 311 + 2 305 121623 112 19 12 149 7 6 24 chain 9999 chr1 249250621 + 149795520 149795672 Tigger4b 360 - 2 163 160588 33 19 28 100 chain 9486 chr1 249250621 + 149796059 149796255 Tigger4 2445 - 2123 2302 163137 12 0 1 73 5 1 13 2 0 11 7 6 23 13 6 5 2 0 12 1 0 10 1 0 6 chain 9586 chr1 249250621 + 149840686 149840882 Tigger4 2445 + 143 322 162662 6 1 0 10 1 0 12 2 0 5 13 6 23 7 6 11 2 0 14 5 1 72 0 1 12 chain 9999 chr1 249250621 + 149841269 149841421 Tigger4b 360 + 197 358 160586 100 19 28 33 chain 22621 chr1 249250621 + 149868758 149869047 AluSp 311 + 0 299 117481 69 0 9 60 3 4 157 chain 529012 chr1 249250621 + 149923964 149930070 L1PA5 6144 - 1 6139 4297 676 1 0 169 15 19 998 0 2 789 0 4 21 4 5 240 1 0 130 0 2 656 0 4 47 0 4 210 1 0 132 0 1 349 0 1 504 16 10 227 0 4 794 0 14 126 chain 2998 chr1 249250621 + 149935315 149935348 MER58B 340 - 6 39 225078 33 chain 24793 chr1 249250621 + 149948270 149948567 AluSp 311 + 10 305 105929 35 2 0 260 chain 69640 chr1 249250621 + 150023951 150025341 L1PREC2 3366 + 2019 3249 48554 60 0 2 276 0 4 391 2 0 6 5 15 33 1 0 20 3 11 13 1 0 18 74 23 14 5 0 11 8 6 24 46 29 34 3 1 41 3 1 7 1 0 4 1 0 12 198 121 19 10 5 9 4 0 12 13 0 8 chain 24127 chr1 249250621 + 150031369 150031655 AluSp 311 - 16 301 109602 209 1 0 76 chain 14658 chr1 249250621 + 150060891 150061120 L1MA6 2487 - 200 411 142398 11 2 0 37 28 12 151 chain 79193 chr1 249250621 + 150071626 150073042 L1PA14 3548 + 2241 3362 43949 45 284 0 199 10 16 34 5 4 50 1 2 67 0 1 28 2 1 102 0 1 147 3 1 9 7 5 40 9 7 5 2 0 106 11 7 13 2 0 6 1 0 30 0 3 51 1 0 31 2 0 23 0 2 54 20 15 16 chain 19171 chr1 249250621 + 150071693 150071955 AluY 311 + 39 302 129610 93 24 25 145 chain 2995 chr1 249250621 + 150080478 150080554 MER3 215 + 88 169 225115 25 16 26 12 6 1 17 chain 12839 chr1 249250621 + 150095222 150095469 L1MB8 1703 - 167 413 148887 65 79 78 103 chain 9744 chr1 249250621 + 150097490 150097597 L1PA5 6144 - 6 113 161873 107 chain 17308 chr1 249250621 + 150097606 150097798 L1PA5 6144 + 5815 6024 134765 156 0 17 36 chain 2720 chr1 249250621 + 150137686 150137722 MLT1H-int 1039 + 221 256 229902 9 1 0 26 chain 25719 chr1 249250621 + 150139594 150139893 AluY 311 + 0 297 101219 26 1 0 106 2 0 70 0 1 94 chain 30690 chr1 249250621 + 150162094 150162509 MLT2A1 477 + 6 477 83052 136 4 11 15 5 2 11 0 1 22 0 1 166 0 7 7 12 55 37 chain 26276 chr1 249250621 + 150172488 150172824 Tigger1 2417 - 823 1161 98919 16 0 1 278 0 1 42 chain 16650 chr1 249250621 + 150178255 150178464 LTR7B 505 + 212 441 136528 15 4 25 70 1 0 119 chain 10919 chr1 249250621 + 150209318 150209487 U2 167 + 0 164 156530 129 20 15 20 chain 24892 chr1 249250621 + 150214025 150214316 AluSc5 308 - 15 308 105400 18 0 2 273 chain 25438 chr1 249250621 + 150219073 150219383 AluSq2 311 + 4 311 102509 121 2 0 8 0 1 153 2 0 24 chain 3251 chr1 249250621 + 150264319 150264469 MER58A 224 - 25 179 219994 32 47 49 12 42 44 17 chain 80981 chr1 249250621 + 150367503 150369134 L1PB1 5432 - 12 1259 43201 16 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 15 10 9 35 1 0 16 2 1 53 2 0 9 16 11 13 1 0 20 443 103 380 8 0 10 11 7 98 1 0 159 0 1 49 3 0 103 1 4 27 chain 17019 chr1 249250621 + 150369134 150369342 L1PB1 5432 + 3929 4141 135542 94 0 4 114 chain 20676 chr1 249250621 + 150374424 150374713 AluSg7 307 - 0 287 125048 8 2 0 13 2 0 19 1 3 108 19 19 117 chain 5936 chr1 249250621 + 150383232 150383325 MLT1B 390 - 16 109 185820 42 0 1 29 10 9 12 chain 11614 chr1 249250621 + 150409538 150409689 Tigger1 2417 + 1471 1622 153837 124 1 0 4 0 1 22 chain 6360 chr1 249250621 + 150424217 150424321 MLT1C 463 + 63 165 182312 56 7 8 15 3 0 23 chain 24458 chr1 249250621 + 150458493 150458778 AluSq10 312 - 7 293 107768 61 0 1 224 chain 3156 chr1 249250621 + 150461147 150461189 L1MA4 2864 - 63 103 221804 35 2 0 5 chain 25147 chr1 249250621 + 150465957 150466253 AluSp 311 + 10 306 104013 296 chain 10949 chr1 249250621 + 150491922 150492050 AluSp 311 + 8 136 156404 128 chain 22170 chr1 249250621 + 150492351 150492631 AluSp 311 + 5 287 119493 91 0 3 166 5 4 18 chain 31207 chr1 249250621 + 150553161 150553590 LTR7B 505 - 2 505 82153 49 14 13 52 0 1 23 1 0 46 0 1 38 0 2 26 6 68 69 0 10 105 chain 7787 chr1 249250621 + 150575239 150575322 L1HS 6032 - 1 84 172371 83 chain 24590 chr1 249250621 + 150578416 150578732 AluSc 308 - 1 308 107042 5 2 0 6 4 0 68 2 0 102 1 0 126 chain 3873 chr1 249250621 + 150580072 150580117 U4 144 - 0 45 209255 45 chain 7106 chr1 249250621 + 150605283 150605361 LTR5_Hs 974 + 0 78 176714 78 chain 156888 chr1 249250621 + 150605364 150607138 HERVK-int 6823 - 1295 3075 23742 14 5 4 288 0 7 1467 chain 80135 chr1 249250621 + 150607399 150608361 LTR5_Hs 974 + 0 974 43534 13 0 4 267 5 7 81 6 12 183 0 1 249 6 0 8 0 6 80 2 1 62 chain 27502 chr1 249250621 + 150612644 150613051 LTR7B 505 + 0 497 94644 105 0 10 27 0 2 31 0 38 12 3 27 26 0 2 38 0 1 46 1 0 23 4 5 23 0 14 11 14 13 43 chain 30476 chr1 249250621 + 150613851 150614252 LTR7 482 + 0 471 83478 69 8 46 118 0 31 25 3 4 178 chain 393538 chr1 249250621 + 150627126 150631701 HERVK9-int 4720 + 134 4719 10337 33 6 7 192 0 1 839 0 2 142 11 12 258 0 1 578 5 6 864 1 0 47 0 1 179 9 7 114 0 5 1297 chain 37491 chr1 249250621 + 150631702 150632192 MER9a3 513 + 0 513 72823 15 3 4 160 0 1 76 7 6 50 12 33 89 0 3 8 2 0 68 chain 22394 chr1 249250621 + 150672004 150672296 AluSc 308 - 15 297 118513 14 2 1 146 10 1 120 chain 89285 chr1 249250621 + 150681665 150682689 LTR5A 1029 + 0 1029 39894 13 0 4 130 1 0 542 0 2 338 chain 29563 chr1 249250621 + 150691451 150691760 AluYa5 310 + 1 310 86368 309 chain 4409 chr1 249250621 + 150699304 150699359 U6 107 - 52 107 201812 55 chain 165306 chr1 249250621 + 150700420 150702441 SVA_F 1814 - 0 1805 22612 627 1 0 10 1 0 140 226 0 74 0 15 12 1 0 48 3 0 358 0 1 520 chain 1314 chr1 249250621 + 150701199 150701248 SVA_F 1814 - 601 650 130911 49 chain 3163 chr1 249250621 + 150701248 150701322 SVA_F 1814 - 777 851 125700 74 chain 5584 chr1 249250621 + 150701364 150701425 SVA_F 1814 - 540 601 139988 61 chain 8356 chr1 249250621 + 150712203 150712334 Tigger1 2417 + 643 780 169097 27 14 20 90 chain 141924 chr1 249250621 + 150753369 150755021 SVA_F 1814 + 0 1814 25836 514 120 0 190 0 40 140 0 242 688 chain 3203 chr1 249250621 + 150753899 150753938 SVA_F 1814 + 374 413 220891 39 chain 2558 chr1 249250621 + 150753963 150754003 SVA_F 1814 + 514 787 183034 23 0 233 17 chain 7267 chr1 249250621 + 150785072 150785174 U6 107 - 6 107 175670 59 7 6 36 chain 142199 chr1 249250621 + 150822718 150824352 SVA_C 1631 + 0 1628 25782 17 2 0 7 4 0 700 43 0 231 1 49 618 5 0 6 chain 2904 chr1 249250621 + 150823448 150823491 SVA_C 1631 + 761 804 123649 43 chain 23305 chr1 249250621 + 150835267 150835545 AluSx4 309 + 21 299 114177 278 chain 39294 chr1 249250621 + 150836816 150837248 L1PA2 6032 + 5600 6029 70338 6 3 0 423 chain 5800 chr1 249250621 + 150854934 150855011 HY3 101 - 7 101 187143 8 0 17 69 chain 10625 chr1 249250621 + 150866256 150866385 MER85 139 + 0 139 157709 89 0 10 40 chain 53268 chr1 249250621 + 150872325 150872989 LTR12_ 688 + 24 688 56848 428 1 2 59 1 0 175 chain 20381 chr1 249250621 + 150874118 150874417 AluY 311 + 11 299 125957 21 1 0 101 3 0 103 17 9 28 8 9 17 chain 5535 chr1 249250621 + 150882968 150883106 L1MB8 1703 - 1124 1272 189715 56 60 70 22 chain 21234 chr1 249250621 + 150897225 150897510 AluSc8 310 + 5 309 123083 19 4 0 28 14 34 46 0 3 174 chain 64556 chr1 249250621 + 150901088 150901835 L1PA5 6144 - 0 764 50776 8 3 0 80 0 19 272 0 1 384 chain 6541 chr1 249250621 + 150904026 150904096 L1PA2 6032 + 5958 6028 180909 70 chain 9795 chr1 249250621 + 150909696 150909947 L1MB2 1706 + 1435 1693 161616 54 72 94 15 1 0 13 1 0 10 1 0 6 20 8 58 chain 3755 chr1 249250621 + 150921049 150921094 MER41A 554 + 423 468 211074 45 chain 23440 chr1 249250621 + 150952598 150952882 AluSx3 311 + 8 293 113429 118 0 1 166 chain 25088 chr1 249250621 + 150993648 150993940 AluSp 311 + 0 291 104361 59 1 0 232 chain 25164 chr1 249250621 + 151005564 151005859 AluSp 311 - 15 310 103939 295 chain 24816 chr1 249250621 + 151017767 151018055 AluYc 301 + 2 292 105798 118 0 2 170 chain 24812 chr1 249250621 + 151035917 151036200 AluYk4 311 - 28 311 105830 283 chain 23563 chr1 249250621 + 151046455 151046749 AluYk4 311 - 11 310 112779 23 0 4 62 6 7 203 chain 22974 chr1 249250621 + 151047094 151048332 MER41A 554 - 227 554 115740 57 10 5 48 9 1 127 902 4 85 chain 9701 chr1 249250621 + 151047630 151047758 AluY 311 + 0 134 162081 57 1 7 70 chain 53545 chr1 249250621 + 151048341 151049657 MER41-int 2638 - 2 783 56648 130 2 0 52 0 8 377 643 104 89 2 0 21 chain 14959 chr1 249250621 + 151049661 151050138 MER41-int 2638 + 1650 1857 141448 18 1 0 26 1 3 46 8 0 70 263 0 44 chain 3654 chr1 249250621 + 151056155 151056200 Charlie1a 1436 - 842 888 212728 27 0 1 18 chain 18357 chr1 249250621 + 151056281 151056510 AluSg7 307 - 73 303 131917 107 0 1 122 chain 25177 chr1 249250621 + 151064576 151064872 AluSc 308 - 4 300 103859 296 chain 18367 chr1 249250621 + 151087607 151087838 AluSp 311 + 53 286 131886 151 8 10 72 chain 27873 chr1 249250621 + 151098078 151098378 AluYa5 310 - 11 310 93444 167 1 0 132 chain 17805 chr1 249250621 + 151100651 151100912 AluY 311 + 24 304 133392 105 12 14 46 0 19 66 10 8 22 chain 3798 chr1 249250621 + 151114425 151114485 MIR 256 - 152 212 210412 38 5 0 6 0 5 11 chain 23607 chr1 249250621 + 151176662 151176952 AluSq2 311 - 20 311 112541 162 0 1 128 chain 25137 chr1 249250621 + 151188567 151188842 AluY 311 + 25 300 104085 275 chain 9944 chr1 249250621 + 151216717 151216841 MER2 342 + 88 215 160862 21 0 3 103 chain 3581 chr1 249250621 + 151228152 151228202 MER53 195 + 5 65 213961 9 0 10 41 chain 9250 chr1 249250621 + 151230339 151230489 L1PREC2 3366 - 723 873 164311 66 28 28 56 chain 34396 chr1 249250621 + 151245141 151245553 LTR12C 1709 + 1293 1709 77063 21 0 5 302 5 4 84 chain 4796 chr1 249250621 + 151251178 151251232 L1MC2 1988 - 81 135 197399 54 chain 23122 chr1 249250621 + 151321282 151322522 AluSp 311 + 0 282 115031 196 959 0 25 0 1 60 chain 4057 chr1 249250621 + 151321505 151321557 AluSp 311 + 238 291 206517 18 0 1 34 chain 9541 chr1 249250621 + 151322225 151322337 AluSp 311 + 10 125 162876 62 0 3 50 chain 4015 chr1 249250621 + 151324528 151324745 LTR25 836 - 213 426 207142 19 127 129 24 19 13 28 chain 6462 chr1 249250621 + 151334860 151334942 MSTA 426 + 0 83 181537 28 0 1 54 chain 72826 chr1 249250621 + 151334947 151335928 MSTA-int 1630 + 632 1630 47115 81 24 37 90 0 1 100 11 12 272 0 3 288 1 0 41 4 5 49 1 0 19 chain 26401 chr1 249250621 + 151387859 151388169 AluY 311 + 0 305 98406 84 5 0 221 chain 7186 chr1 249250621 + 151411486 151411569 HY4 93 + 11 93 176166 56 1 0 26 chain 21073 chr1 249250621 + 151415904 151416204 AluSp 311 + 11 296 123645 60 15 0 140 1 2 17 8 7 59 chain 3962 chr1 249250621 + 151447615 151447970 Charlie13a 687 + 199 532 207964 42 289 267 24 chain 27265 chr1 249250621 + 151463581 151463892 AluSp 311 - 0 311 95383 311 chain 25634 chr1 249250621 + 151474185 151474487 AluSp 311 - 9 311 101567 302 chain 3265 chr1 249250621 + 151487893 151487932 MIRb 242 - 103 142 219677 39 chain 8105 chr1 249250621 + 151490705 151490813 MER5A 189 + 7 113 170462 45 1 0 5 1 0 56 chain 23250 chr1 249250621 + 151494039 151494323 AluSp 311 + 1 291 114443 29 0 6 255 chain 13281 chr1 249250621 + 151525252 151525545 MER39B 650 - 120 361 147169 43 94 34 103 0 4 11 10 14 32 chain 30636 chr1 249250621 + 151565282 151566014 MER4B 649 + 0 622 83145 27 1 0 72 22 22 15 1 0 21 0 42 103 0 1 45 268 118 97 12 11 48 chain 169053 chr1 249250621 + 151572092 151574213 SVA_E 1901 + 0 1900 22166 145 2 0 179 3 0 493 169 0 25 0 1 84 3 0 38 50 0 130 1 0 33 44 0 93 0 1 7 0 49 622 chain 2380 chr1 249250621 + 151572914 151572954 SVA_E 1901 + 777 817 159166 40 chain 6720 chr1 249250621 + 151572955 151573067 SVA_E 1901 + 817 974 71153 26 1 0 80 0 46 5 chain 2520 chr1 249250621 + 151573233 151573275 SVA_E 1901 + 1014 1057 71153 38 0 1 4 chain 5428 chr1 249250621 + 151601805 151601873 U6 107 + 6 74 190722 68 chain 141256 chr1 249250621 + 151623071 151624660 SVA_F 1814 - 2 1808 25946 9 6 0 5 0 1 34 0 1 670 2 144 18 1 0 65 0 40 255 0 40 524 chain 28874 chr1 249250621 + 151640019 151640327 AluYa5 310 + 0 306 89566 123 2 0 183 chain 8839 chr1 249250621 + 151640427 151640697 MSTB1 431 - 0 426 166436 89 111 264 13 3 5 25 15 16 14 chain 240865 chr1 249250621 + 151643124 151646926 L1MA2 4263 - 701 4241 16730 263 32 37 6 5 0 119 0 1 155 318 9 61 3 0 23 0 1 104 0 1 4 2 0 19 7 4 10 0 1 9 2 91 52 0 1 230 0 3 92 0 4 33 1 0 111 6 7 15 1 0 32 0 4 181 4 3 92 0 1 7 1 0 4 0 3 171 0 4 36 23 28 18 0 5 21 1 0 24 3 0 10 0 4 57 0 2 46 9 17 4 1 0 4 0 1 205 4 6 32 0 5 14 69 5 9 3 1 278 11 0 97 9 10 169 7 4 150 1 0 79 11 10 56 1 6 18 6 0 81 4 0 9 0 4 47 chain 23147 chr1 249250621 + 151660832 151661124 AluSx3 311 + 5 299 114907 127 20 22 145 chain 4435 chr1 249250621 + 151700385 151700534 MER5B 177 + 3 153 201519 44 77 79 7 1 0 20 chain 21119 chr1 249250621 + 151703688 151703958 AluSx4 309 + 9 293 123491 46 10 23 86 0 1 128 chain 17545 chr1 249250621 + 151708491 151708825 MSTA 426 + 0 380 134138 92 6 7 4 0 1 55 0 4 38 71 100 10 3 6 37 0 8 18 chain 25878 chr1 249250621 + 151730268 151730569 AluSq2 311 + 11 310 100537 118 2 0 181 chain 15613 chr1 249250621 + 151737057 151737347 MER47A 366 + 0 362 139540 17 57 119 73 11 16 44 0 5 88 chain 122517 chr1 249250621 + 151741142 151742600 SVA_C 1631 - 8 1631 30215 9 7 0 274 0 2 258 0 3 67 0 92 78 0 40 150 16 13 72 0 37 317 0 3 126 14 1 57 1 12 12 chain 6480 chr1 249250621 + 151758804 151758881 MER44B 551 - 284 361 181396 77 chain 3749 chr1 249250621 + 151770684 151770726 MER3 215 + 50 92 211141 42 chain 4645 chr1 249250621 + 151785048 151785105 MER5B 177 + 91 148 199123 57 chain 8041 chr1 249250621 + 151799648 151799742 MIR 256 - 132 226 170806 94 chain 8432 chr1 249250621 + 151814214 151814313 HY3 101 - 2 101 168668 99 chain 6756 chr1 249250621 + 151850098 151850197 MER3 215 + 5 111 179275 55 5 12 39 chain 12270 chr1 249250621 + 151855890 151856060 THE1D 372 - 197 372 151113 14 0 1 12 9 13 135 chain 11472 chr1 249250621 + 151868205 151868366 MSTA 426 + 28 192 154412 103 9 8 13 0 4 36 chain 13002 chr1 249250621 + 151869879 151870026 MLT2A1 477 + 213 360 148244 147 chain 252845 chr1 249250621 + 151870113 151874540 L1PBa1 4058 + 49 3439 16089 7 1 0 34 0 4 62 1 2 91 0 3 57 6 1 15 4 5 101 3 1 19 0 1 4 6 5 28 0 1 27 0 1 48 1 0 57 9 8 26 2 3 226 10 10 169 0 3 259 8 6 5 0 2 45 4 0 233 296 0 23 0 4 22 1 0 36 0 77 25 0 1 660 11 0 193 0 6 46 5 1 234 512 0 164 0 2 15 2 3 85 1 0 24 313 12 6 1 0 47 1 0 131 1 0 4 chain 41080 chr1 249250621 + 151873249 151873742 MER9a3 513 + 15 513 67796 95 0 1 147 1 0 177 0 1 16 0 4 57 chain 28382 chr1 249250621 + 151874540 151875106 L1PB1 5432 + 4751 5413 91255 53 1 0 100 0 73 72 2 3 22 34 84 11 3 1 50 2 1 10 11 10 40 1 0 15 3 0 7 15 6 15 27 22 24 1 0 7 5 3 11 1 0 13 1 0 9 chain 117990 chr1 249250621 + 151878429 151879859 LTR12C 1709 + 0 1709 31808 654 0 278 180 1 0 4 4 2 106 0 4 382 26 25 68 0 1 5 chain 16502 chr1 249250621 + 151879862 151880089 LTR76 689 + 437 647 136913 35 4 0 33 15 0 101 0 1 31 0 1 8 chain 14102 chr1 249250621 + 151881332 151881538 MER61-int 3695 + 1 194 144214 27 13 1 21 1 0 15 0 1 39 1 0 89 chain 6116 chr1 249250621 + 151893041 151893133 LTR51 675 + 580 675 184304 24 8 12 4 1 0 55 chain 44569 chr1 249250621 + 151925774 151926394 LTR66 600 - 0 600 63509 32 0 1 5 1 0 52 5 21 15 0 17 53 6 0 69 47 0 335 chain 4572 chr1 249250621 + 151942055 151942105 LTR41 747 + 678 728 199970 50 chain 3660 chr1 249250621 + 151951023 151951083 MER41B 635 + 481 554 212581 30 0 1 8 1 14 5 1 0 15 chain 4366 chr1 249250621 + 151959135 151959218 L1MA8 2339 - 266 350 202376 11 1 3 47 9 8 15 chain 3465 chr1 249250621 + 152051117 152051331 SVA_F 1814 - 1310 1440 215902 31 11 0 8 3 50 18 129 9 14 chain 10066 chr1 249250621 + 152065723 152065848 L1MA7 2200 + 1672 1794 160240 47 3 0 75 chain 3918 chr1 249250621 + 152071436 152071509 L1PB3 3668 + 3482 3551 208570 15 2 1 5 1 0 25 3 1 22 chain 30721 chr1 249250621 + 152101454 152101797 L1PA3long 6157 + 5811 6157 83001 203 0 1 42 0 1 82 0 1 16 chain 94295 chr1 249250621 + 152111151 152112209 L1PA5 6144 - 34 1099 38263 40 1 8 58 0 1 626 1 0 332 chain 132611 chr1 249250621 + 152116612 152118168 SVA_C 1631 - 1 1607 27499 16 4 0 584 0 41 58 1 2 74 0 40 756 26 1 28 3 0 6 chain 57129 chr1 249250621 + 152122164 152123023 L1PA16 3655 - 62 933 54444 15 3 0 157 6 5 123 2 0 66 5 19 4 1 0 32 31 32 140 0 3 15 0 2 10 6 2 26 7 8 17 1 0 19 2 1 8 0 4 163 chain 16940 chr1 249250621 + 152138634 152138950 MER51B 395 - 8 379 135751 69 10 22 28 6 7 16 1 0 30 0 1 4 1 0 6 0 1 9 11 28 54 6 12 33 8 27 24 chain 129116 chr1 249250621 + 152167955 152169745 SVA_C 1631 - 9 1631 28289 136 4 0 456 17 12 16 2 1 45 1 0 46 2 1 22 30 32 131 83 0 42 117 0 35 3 0 82 0 37 53 0 3 451 0 1 4 0 4 12 chain 2534 chr1 249250621 + 152168705 152168732 SVA_C 1631 - 789 816 154493 27 chain 2201 chr1 249250621 + 152168863 152168886 SVA_C 1631 - 867 890 158557 23 chain 1589 chr1 249250621 + 152168886 152168946 SVA_C 1631 - 927 1063 168883 19 7 83 34 chain 91892 chr1 249250621 + 152180134 152181161 L1PA4 6152 - 1 1027 38999 459 9 8 559 chain 79893 chr1 249250621 + 152225061 152226112 HERVL-int 5654 - 1045 2101 43643 241 10 14 116 5 4 140 0 1 130 0 1 219 0 1 18 0 1 15 18 16 139 chain 5762 chr1 249250621 + 152226127 152226197 THE1C 375 - 107 177 187524 70 chain 11175 chr1 249250621 + 152226199 152226342 THE1C 375 + 231 373 155544 119 1 0 23 chain 138073 chr1 249250621 + 152228083 152229658 SVA_D 2077 - 21 2059 26472 597 0 3 6 3 0 44 0 50 9 0 2 29 0 1 29 2 398 195 0 12 28 0 2 633 chain 302701 chr1 249250621 + 152231440 152235284 L1PA6 6164 - 13 3562 13293 4 1 0 574 0 4 28 0 1 161 301 0 1178 0 1 503 0 1 1094 chain 400148 chr1 249250621 + 152235293 152239883 L1PA4 6152 + 1542 6151 10093 173 0 1 426 1 7 172 0 1 212 0 1 647 1 5 5 3 0 248 1 4 151 1 2 85 1 0 166 0 5 1363 0 1 934 chain 120141 chr1 249250621 + 152243989 152245376 L1PA4 6152 + 3600 4991 31011 756 1 5 630 chain 87446 chr1 249250621 + 152245376 152246370 L1PA4 6152 + 4992 5989 40580 439 0 3 555 chain 14715 chr1 249250621 + 152246370 152246530 L1PA4 6152 + 5992 6152 142221 160 chain 372438 chr1 249250621 + 152250730 152256068 L1PB1 5432 + 34 5424 11013 12 13 14 26 5 6 79 7 11 17 4 5 195 2 0 395 0 1 169 0 1 72 5 7 178 2 1 74 1 0 4 0 1 93 2 1 6 19 0 9 9 7 424 0 2 42 0 9 105 6 5 106 2 0 6 1 3 179 0 66 7 0 8 108 8 0 4 0 1 44 1 2 296 2 0 28 0 1 68 28 0 636 0 1 152 0 6 7 3 0 108 0 1 85 4 6 15 25 57 38 4 5 148 5 6 171 3 0 106 15 20 10 0 1 104 0 1 12 5 7 79 1 2 203 0 3 181 1 2 9 9 0 24 40 32 50 2 1 16 1 0 44 1 0 15 25 13 18 8 5 14 1 5 19 1 0 18 8 7 9 1 0 16 1 0 4 chain 216884 chr1 249250621 + 152260428 152263097 L1PA5 6144 - 12 2551 18061 34 139 0 101 0 1 184 2 1 128 0 1 108 0 2 145 0 3 439 1 2 498 2 0 131 1 5 756 chain 2124 chr1 249250621 + 152260558 152260581 L1PA5 6144 - 143 166 237417 23 chain 192074 chr1 249250621 + 152264027 152266521 L1P3 4156 + 0 2505 19862 152 10 19 71 5 19 61 1 0 79 1 0 8 1 0 591 0 1 552 1 2 561 0 1 184 17 5 199 chain 205701 chr1 249250621 + 152267119 152269464 L1PA4 6152 - 16 2362 18807 919 0 1 1426 chain 177504 chr1 249250621 + 152269464 152271606 L1PA5 6144 + 3983 6130 21184 175 4 5 512 0 1 360 0 1 172 0 1 4 0 2 5 7 5 67 0 1 696 7 0 7 6 13 120 chain 5149 chr1 249250621 + 152334926 152334990 MER75A 77 + 13 77 193555 64 chain 9128 chr1 249250621 + 152342772 152342871 L1PA4 6152 + 5728 5827 164919 99 chain 28088 chr1 249250621 + 152342888 152343198 L1PA4 6152 + 5827 6137 92689 310 chain 11125 chr1 249250621 + 152350152 152350291 Tigger1 2417 + 1019 1158 155714 139 chain 186298 chr1 249250621 + 152351118 152353860 HUERS-P2-int 2744 - 0 2715 20395 29 2 0 12 2 0 5 2 0 9 1 0 34 4 0 39 1 0 15 4 2 8 1 0 9 2 1 39 9 11 20 2 0 71 1 0 74 6 8 43 15 43 24 3 0 723 1 2 173 8 9 286 0 1 245 2 0 65 9 7 235 1 0 4 5 9 23 3 1 6 0 1 26 2 1 44 1 0 8 0 10 18 59 35 13 17 13 11 5 0 10 10 6 72 39 32 15 1 0 53 1 0 5 2 0 32 1 0 10 0 3 12 chain 6540 chr1 249250621 + 152354041 152354125 LTR1 825 - 0 83 180914 79 1 0 4 chain 9684 chr1 249250621 + 152358988 152359110 Tigger1 2417 + 2251 2372 162180 61 1 0 60 chain 12876 chr1 249250621 + 152363055 152363406 L1PB1 5432 - 10 326 148722 17 2 1 13 1 0 21 1 0 5 1 0 19 3 1 14 1 0 4 2 0 18 30 17 12 16 15 28 1 0 15 3 2 52 2 0 7 43 36 11 1 0 8 chain 19091 chr1 249250621 + 152367213 152367606 L1PA11 4918 - 350 712 129841 14 1 0 14 14 10 10 44 34 12 2 0 7 4 0 51 15 11 11 2 1 65 2 0 6 10 7 109 chain 302897 chr1 249250621 + 152372679 152376046 L1PA3long 6157 - 0 3381 13285 783 0 1 60 4 6 1318 1 4 55 1 0 47 0 8 6 3 0 357 0 4 732 chain 41524 chr1 249250621 + 152393702 152394199 MER9a3 513 - 0 498 67253 37 10 11 450 chain 92200 chr1 249250621 + 152394213 152395327 HERVK9-int 4720 - 0 1117 38899 326 0 4 343 8 7 437 chain 43514 chr1 249250621 + 152396644 152397163 MER9a3 513 - 0 513 64795 68 2 0 96 5 0 330 0 1 18 chain 430585 chr1 249250621 + 152403687 152408384 L1PA2 6032 - 5 4699 9298 8 4 0 3457 0 1 1228 chain 94940 chr1 249250621 + 152425719 152427086 L1PA15 4387 - 334 1732 38114 13 0 2 6 3 1 20 3 2 77 1 0 25 1 0 19 2 0 78 0 7 371 12 43 77 0 2 120 12 8 30 4 13 174 0 2 14 37 20 22 4 3 110 0 3 35 15 19 82 chain 77732 chr1 249250621 + 152427584 152428557 LTR5_Hs 974 - 0 974 44641 122 1 0 69 7 7 68 0 1 50 0 1 173 4 0 21 0 4 458 chain 91280 chr1 249250621 + 152436656 152437666 L1PA3long 6157 - 0 1013 39202 155 0 3 855 chain 125164 chr1 249250621 + 152443881 152445283 SVA_D 2077 - 0 2077 29336 622 0 1 15 0 536 310 0 116 197 0 22 258 chain 113616 chr1 249250621 + 152448467 152449959 THE1C-int 1605 - 0 1546 33198 257 26 26 209 1 0 93 0 13 114 4 5 29 2 27 380 0 7 112 0 6 140 1 0 5 0 1 62 0 3 57 chain 23646 chr1 249250621 + 152450389 152450711 THE1C 375 - 44 367 112329 134 14 14 118 0 2 5 1 0 50 chain 45872 chr1 249250621 + 152458337 152458918 LTR71B 605 - 0 604 62151 173 5 4 73 0 12 190 3 0 11 0 15 126 chain 169851 chr1 249250621 + 152462357 152464168 L1HS 6032 - 0 1811 22071 1811 chain 8755 chr1 249250621 + 152464605 152464715 L1PA16 3655 + 3465 3575 166892 110 chain 28980 chr1 249250621 + 152503864 152504206 LTR14A 344 - 0 344 89091 194 0 2 148 chain 532294 chr1 249250621 + 152520265 152526394 L1PA4 6152 - 0 6145 3929 6 0 5 56 4 0 101 2 1 4 0 1 1349 1 0 949 1 0 1094 0 2 742 0 1 604 0 1 191 0 2 659 0 1 137 0 10 229 chain 265733 chr1 249250621 + 152587056 152590048 L1PA4 6152 + 3129 6152 15405 554 8 0 314 2 0 902 0 21 6 0 1 622 0 11 502 0 3 76 0 5 6 chain 45714 chr1 249250621 + 152604451 152605137 L1PREC2 3366 + 1162 1830 62305 74 18 13 50 1 0 11 1 0 64 4 6 145 0 1 18 0 3 6 5 2 40 13 0 152 2 0 21 1 2 60 chain 32387 chr1 249250621 + 152638506 152638898 L1PA7 6471 - 5 390 80212 7 7 0 378 chain 71341 chr1 249250621 + 152660923 152661891 L1PA8 5853 - 0 968 47510 6 0 1 86 1 0 17 1 0 38 23 23 73 2 0 45 1 0 43 0 1 93 0 2 30 8 10 117 8 9 250 2 0 124 chain 163245 chr1 249250621 + 152661891 152663859 L1PA8 5853 + 2907 4868 22915 127 4 0 187 3 1 1068 0 1 79 1 0 211 0 1 120 3 1 165 chain 316259 chr1 249250621 + 152664072 152667710 L1P1 4361 + 686 4341 12751 351 0 2 1328 0 8 496 0 4 17 1 2 29 0 1 13 1 7 1047 2 0 160 1 0 154 1 0 23 2 1 12 chain 17140 chr1 249250621 + 152697507 152697705 L1PA5 6144 - 4 202 135203 198 chain 60067 chr1 249250621 + 152726902 152727827 L1PB1 5432 - 28 921 52792 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 12 1 16 1 0 44 5 4 11 2 1 52 2 0 9 6 2 11 1 0 8 1 0 24 1 0 5 14 13 347 4 5 39 10 12 63 4 0 119 chain 22935 chr1 249250621 + 152729668 152729924 L1PA4 6152 - 9 266 115932 252 0 1 4 chain 25493 chr1 249250621 + 152743517 152743903 THE1C 375 - 0 375 102260 25 2 1 11 13 0 154 1 2 29 7 11 22 3 0 33 5 6 81 chain 150858 chr1 249250621 + 152744553 152746240 L1PA4 6152 - 9 1698 24494 139 0 1 89 0 1 1459 chain 7408 chr1 249250621 + 152771752 152771836 MLT2A2 560 - 0 84 174728 84 chain 540124 chr1 249250621 + 152802760 152808852 L1PA4 6152 + 42 6152 2802 73 7 21 20 21 7 202 6 7 1941 2 0 23 0 17 1425 0 1 143 0 1 2229 chain 16678 chr1 249250621 + 152810552 152810746 L1PA5 6144 - 0 195 136467 168 0 1 26 chain 9748 chr1 249250621 + 152810938 152811138 MER30 238 - 0 200 161854 48 3 0 25 47 51 8 4 0 10 0 3 55 chain 29409 chr1 249250621 + 152811387 152811709 L1PA2 6032 - 6 330 87026 152 0 3 101 1 0 68 chain 6350 chr1 249250621 + 152817697 152817765 L1PA2 6032 + 5964 6032 182372 68 chain 56053 chr1 249250621 + 152824781 152825418 L1PA5 6144 - 0 637 55087 637 chain 29426 chr1 249250621 + 152853882 152854189 AluYb8 318 + 0 307 86956 307 chain 29054 chr1 249250621 + 152897389 152897696 AluYa5 310 - 3 310 88743 307 chain 84959 chr1 249250621 + 152900064 152901005 L1PA3long 6157 + 5211 6152 41530 941 chain 189358 chr1 249250621 + 152909345 152911444 L1PA3long 6157 - 0 2075 20113 202 24 0 1873 chain 136931 chr1 249250621 + 152911444 152912987 L1PA3long 6157 + 2505 4081 26656 139 1 39 82 9 3 746 0 1 566 chain 119654 chr1 249250621 + 152928052 152929355 L1PA2 6032 - 4 1308 31160 1128 3 4 172 chain 70297 chr1 249250621 + 152929355 152930125 L1PA2 6032 + 3963 4741 47992 184 0 1 504 0 7 82 chain 42437 chr1 249250621 + 152930930 152931473 MER41A 554 + 0 554 66098 271 8 10 190 0 9 74 chain 20139 chr1 249250621 + 152940445 152940686 L1PA4 6152 + 5903 6152 126713 92 0 1 31 1 3 111 0 5 6 chain 322819 chr1 249250621 + 152977114 152980696 L1PA3long 6157 - 15 3601 12494 1645 6 0 1225 0 1 480 0 4 73 0 5 153 chain 32573 chr1 249250621 + 152980696 152981051 L1PA3long 6157 + 2196 2551 79603 355 chain 57626 chr1 249250621 + 152983455 152984233 LTR12 884 - 16 884 54174 218 14 10 65 0 4 68 2 1 4 0 1 7 15 0 113 2 0 68 1 2 124 0 107 51 1 0 25 chain 33190 chr1 249250621 + 152990044 152990413 L1PA4 6152 - 1 370 78905 369 chain 52330 chr1 249250621 + 152993030 152993742 MER4-int 2692 + 535 2692 57414 78 0 4 76 1 1434 99 0 1 229 23 27 5 0 2 66 0 1 135 chain 33975 chr1 249250621 + 152993756 152994169 MER4A1 472 + 6 453 77653 217 0 21 68 1 14 127 chain 41898 chr1 249250621 + 152994432 152994957 LTR6B 557 + 0 557 66756 22 0 28 5 1 2 302 0 1 36 1 0 99 0 1 4 0 1 33 0 1 22 chain 30536 chr1 249250621 + 152995460 152995855 MER48 407 - 0 403 83360 55 4 12 305 1 0 4 0 1 26 chain 6109 chr1 249250621 + 153011734 153011825 L1PA15 4387 - 179 268 184351 23 1 0 51 5 4 11 chain 151418 chr1 249250621 + 153050849 153052555 L1PA4 6152 - 9 1715 24407 522 0 1 326 2 0 79 0 1 777 chain 3648 chr1 249250621 + 153054754 153054807 L1M4c 1769 + 1686 1740 212819 41 2 0 5 0 3 5 chain 83694 chr1 249250621 + 153060776 153061750 LTR5A 1029 - 54 1028 42039 825 1 0 87 0 1 61 chain 12025 chr1 249250621 + 153064961 153065100 L1PA4 6152 + 6012 6151 152094 139 chain 5974 chr1 249250621 + 153071900 153071969 L1PA3long 6157 + 6086 6155 185480 69 chain 187918 chr1 249250621 + 153081128 153083214 L1PA3long 6157 + 4063 6150 20249 967 0 1 276 2 1 699 0 1 142 chain 46793 chr1 249250621 + 153083276 153083817 L1PA7 6471 + 5924 6465 61375 541 chain 42786 chr1 249250621 + 153091854 153092526 LTR76 689 - 8 682 65675 33 0 2 7 3 2 24 25 27 211 0 1 5 3 58 12 61 6 166 1 0 78 1 0 42 chain 115099 chr1 249250621 + 153095843 153098617 L1PBa 3878 + 92 1735 32758 7 1 0 26 1183 40 46 3 1 25 2 0 100 10 12 175 1 0 46 5 8 89 2 1 571 5 7 193 10 25 102 6 1 38 0 3 9 1 0 118 chain 86488 chr1 249250621 + 153095926 153097008 MER11B 1079 - 0 1072 40973 11 5 4 291 10 3 197 21 22 292 3 0 252 chain 99212 chr1 249250621 + 153114839 153115953 L1P1 4361 - 117 1232 36968 94 1 0 217 0 1 331 0 1 471 chain 59070 chr1 249250621 + 153133053 153133712 L1PA4 6152 + 5477 6143 53351 529 0 7 130 chain 473269 chr1 249250621 + 153154861 153160992 L1PA8 5853 - 0 5802 7940 93 1 0 16 1 0 44 7 4 17 1 0 68 2 0 46 2 1 95 0 4 69 0 2 50 0 1 155 334 0 178 2 0 385 0 1 370 0 11 26 0 1 164 0 2 57 7 9 170 1 0 599 10 0 96 1 0 229 0 3 869 0 2 12 1 15 499 7 9 66 4 2 1104 0 4 197 30 13 13 1 0 8 3 2 21 chain 39286 chr1 249250621 + 153184104 153184549 L1PA2 6032 - 0 517 70343 11 2 0 414 4 78 14 chain 5850 chr1 249250621 + 153184549 153184611 L1PA2 6032 + 5529 5591 172110 62 chain 14850 chr1 249250621 + 153188508 153188678 L1PA4 6152 - 12 182 141778 170 chain 11964 chr1 249250621 + 153208577 153208786 Tigger2b 204 - 0 204 152347 45 2 0 12 38 36 24 1 0 87 chain 6813 chr1 249250621 + 153215766 153216385 HAL1-2a_MD 234 - 3 230 178857 6 3 0 7 3 0 39 20 26 5 3 0 15 429 62 12 5 1 27 18 0 27 chain 2396 chr1 249250621 + 153216264 153216291 HAL1-2a_MD 234 - 28 55 234258 27 chain 75695 chr1 249250621 + 153250962 153251770 L1HS 6032 - 2 810 45654 808 chain 41030 chr1 249250621 + 153251770 153252206 L1HS 6032 + 4770 5206 67516 436 chain 80357 chr1 249250621 + 153254441 153255334 L1P1 4361 - 1216 2110 43452 436 0 1 457 chain 3493 chr1 249250621 + 153272927 153272964 MER65A 464 + 1 38 215484 37 chain 502689 chr1 249250621 + 153286737 153293045 L1PA6 6164 - 17 6164 6686 91 0 1 184 30 0 562 0 1 303 0 1 51 0 2 342 1 7 236 0 4 106 0 1 558 0 1 432 0 4 70 0 1 52 0 1 453 4 0 576 63 26 223 0 5 92 0 7 373 0 1 287 0 3 228 18 23 15 0 17 62 21 0 179 76 0 101 34 15 90 5 0 3 22 0 260 8 0 97 chain 5071 chr1 249250621 + 153297833 153298205 L1MC5 759 + 331 715 194404 42 294 306 36 chain 43059 chr1 249250621 + 153316180 153316748 LTR19B 566 + 0 566 65345 101 3 2 47 8 6 5 0 2 138 9 1 69 0 2 76 3 4 94 0 4 15 chain 30577 chr1 249250621 + 153342621 153343229 LTR15 485 + 0 468 83245 173 0 1 109 235 98 55 4 0 32 chain 32325 chr1 249250621 + 153349252 153349879 MER4A 717 - 26 701 80317 41 117 175 89 1 0 50 7 0 108 0 1 86 13 14 28 37 33 50 chain 12430 chr1 249250621 + 153350886 153351088 L1PA17 2846 + 23 221 150532 4 1 0 4 1 0 73 0 4 42 1 0 30 25 20 21 chain 14293 chr1 249250621 + 153353482 153353639 L1PA5 6144 + 5982 6139 143580 157 chain 523537 chr1 249250621 + 153379472 153385614 L1PA5 6144 + 0 6138 4807 48 0 6 124 0 1 38 3 4 210 1 0 4 1 2 732 9 0 60 1 0 1370 0 13 88 14 0 982 2 0 134 1 4 802 1 0 302 2 1 467 0 3 215 3 0 375 20 20 133 chain 55349 chr1 249250621 + 153414281 153414896 L1PA2 6032 - 0 617 55490 149 1 3 465 chain 78000 chr1 249250621 + 153414896 153415737 L1PA2 6032 + 4597 5438 44511 841 chain 130050 chr1 249250621 + 153425755 153427209 L1PA4 6152 - 12 1466 28079 1454 chain 25437 chr1 249250621 + 153468885 153469243 L1PA8 5853 + 5502 5853 102514 34 0 1 27 1 0 44 2 0 69 1 0 7 7 6 45 1 0 5 2 1 19 2 1 92 chain 29901 chr1 249250621 + 153478490 153478845 THE1A 353 - 0 353 85090 155 1 0 88 1 0 110 chain 29348 chr1 249250621 + 153492785 153493200 MER4A1 472 - 39 461 87307 29 16 5 19 2 0 135 9 25 34 0 1 158 1 4 12 chain 112206 chr1 249250621 + 153494079 153495464 LTR12C 1709 + 0 1709 33608 400 7 16 75 0 1 302 8 324 100 6 10 235 5 1 8 0 2 87 1 0 18 3 1 38 15 14 77 chain 26949 chr1 249250621 + 153498284 153499197 MER83 447 + 0 447 96455 14 0 1 132 464 0 31 4 5 38 34 31 61 1 0 25 0 2 56 23 21 30 chain 17760 chr1 249250621 + 153539727 153539985 L1PA8 5853 + 5609 5853 133541 70 1 0 8 22 8 45 2 1 19 1 0 54 0 3 36 chain 134135 chr1 249250621 + 153546957 153548457 SVA_C 1631 + 21 1629 27175 16 0 20 802 1 0 51 1 0 17 0 91 296 1 0 315 chain 138878 chr1 249250621 + 153554814 153556370 SVA_D 2077 + 58 2063 26336 329 0 3 170 0 40 161 3 0 124 0 182 153 1 225 234 0 3 381 chain 3626 chr1 249250621 + 153557845 153557885 L1PA6 6164 - 5 45 213215 40 chain 13813 chr1 249250621 + 153576189 153576391 LTR9B 643 + 445 643 145205 67 0 7 9 9 0 60 17 15 40 chain 10463 chr1 249250621 + 153576433 153576558 MER61-int 3695 + 1483 1610 158060 89 0 2 36 chain 58122 chr1 249250621 + 153576558 153577435 HUERS-P3b-int 2065 + 1162 2030 53917 58 0 1 136 23 20 10 1 2 48 0 1 33 1 0 44 6 4 64 0 20 8 13 0 3 1 0 25 1 0 68 0 1 17 6 4 72 2 0 19 4 1 62 4 0 58 1 0 89 chain 14928 chr1 249250621 + 153577955 153579049 LTR9B 643 + 0 552 141549 59 785 248 27 1 0 79 64 63 36 0 7 6 11 1 26 chain 5923 chr1 249250621 + 153594083 153594158 LTR12C 1709 + 1293 1371 185965 17 3 6 55 chain 23741 chr1 249250621 + 153607348 153607625 AluSp 311 - 31 311 111826 169 1 4 107 chain 21927 chr1 249250621 + 153609848 153610109 AluSg 306 + 5 266 120514 261 chain 6939 chr1 249250621 + 153643725 153643797 tRNA-Met-i 72 + 0 72 177900 72 chain 25121 chr1 249250621 + 153668058 153668346 AluSp 311 + 9 297 104168 288 chain 29769 chr1 249250621 + 153668935 153669251 AluYb8 318 - 2 318 85577 316 chain 8494 chr1 249250621 + 153698728 153698829 HY3 101 - 0 101 168322 101 chain 8916 chr1 249250621 + 153758197 153758297 HY3 101 - 1 101 166056 100 chain 4395 chr1 249250621 + 153758297 153758353 LTR38B 592 + 509 564 202004 35 1 0 20 chain 27894 chr1 249250621 + 153802958 153803250 AluYa5 310 - 18 310 93387 292 chain 22210 chr1 249250621 + 153803622 153803978 L1PA8 5853 + 5507 5853 119302 8 1 0 29 5 4 18 1 0 42 2 0 54 1 0 17 32 30 31 2 1 19 1 0 93 chain 6451 chr1 249250621 + 153805600 153805679 FAM 185 + 64 143 181628 79 chain 9575 chr1 249250621 + 153808498 153808616 Tigger1 2417 + 2298 2416 162720 118 chain 23474 chr1 249250621 + 153812835 153813101 AluSp 311 - 34 300 113249 266 chain 32949 chr1 249250621 + 153817040 153817400 L1PA2 6032 + 5671 6031 79294 360 chain 20076 chr1 249250621 + 153821157 153821420 AluSg7 307 + 10 274 126896 108 9 8 136 0 2 10 chain 22200 chr1 249250621 + 153823674 153826334 L1MB1 2102 - 95 1095 119351 67 2211 522 69 46 55 30 9 19 77 0 2 10 1 0 65 11 19 16 0 1 48 chain 23956 chr1 249250621 + 153856645 153856928 AluY 311 + 11 292 110583 97 0 1 40 3 0 143 chain 24957 chr1 249250621 + 153858061 153858357 AluY 311 + 0 301 105018 68 0 5 228 chain 18874 chr1 249250621 + 153861666 153861912 AluSp 311 + 60 305 130439 43 9 9 169 1 0 24 chain 22749 chr1 249250621 + 153862371 153862676 AluSp 311 + 4 310 116829 104 2 3 21 2 0 6 10 12 160 chain 26312 chr1 249250621 + 153869509 153869804 AluYf4 310 - 15 310 98776 295 chain 4107 chr1 249250621 + 153896537 153896586 MIR 256 - 128 177 205808 49 chain 21036 chr1 249250621 + 153938839 153939093 AluY 311 + 0 269 123781 70 0 3 65 1 13 118 chain 20603 chr1 249250621 + 153961074 153961383 AluSp 311 - 12 307 125283 13 15 0 130 18 19 133 chain 25188 chr1 249250621 + 153967209 153967504 AluSg4 309 + 2 297 103808 295 chain 4541 chr1 249250621 + 153970574 153970625 U3 216 - 163 214 200318 51 chain 27626 chr1 249250621 + 153997398 153997703 AluYf4 310 - 5 310 94279 305 chain 8151 chr1 249250621 + 153998778 153999830 L1MB5 1630 + 1181 1607 170222 48 786 163 23 24 24 32 94 92 38 1 0 6 chain 22773 chr1 249250621 + 154001908 154002193 AluSp 311 + 11 309 116713 143 0 13 142 chain 7209 chr1 249250621 + 154002661 154002793 L1PB1 5432 + 5308 5430 176003 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 67464 chr1 249250621 + 154003101 154010596 L1MA3 4352 - 27 4254 49465 11 1 0 26 8 6 22 2 0 20 1314 326 8 1 0 196 1 0 34 1 2 142 0 3 83 2135 1840 78 1 0 68 12 23 42 1201 287 27 1 0 18 0 5 36 3 10 84 7 9 45 1 0 5 1659 575 14 2 1 54 1 2 48 5 0 19 1 0 58 chain 5594 chr1 249250621 + 154012409 154012483 U6 107 - 18 90 189143 67 2 0 5 chain 21004 chr1 249250621 + 154018959 154019243 L1MA3 4352 + 3777 4052 123896 127 0 1 85 11 5 13 4 0 44 chain 39854 chr1 249250621 + 154019837 154020328 MER9a3 513 + 0 513 69528 18 0 2 91 0 1 60 5 6 80 0 17 159 0 1 78 chain 388061 chr1 249250621 + 154020957 154025880 HERVK9-int 4720 + 71 4705 10518 53 2 0 33 18 17 365 0 7 481 0 1 14 1 0 337 0 1 502 0 1 122 0 1 158 1 0 636 309 0 44 1 0 455 0 1 7 1 0 19 5 6 775 1 15 583 chain 37916 chr1 249250621 + 154025896 154026366 MER9a3 513 + 0 492 72260 18 0 2 91 0 1 67 12 13 66 0 17 159 0 1 57 chain 287573 chr1 249250621 + 154038432 154042670 L1PA6 6164 + 2834 6148 14184 33 3 0 323 0 1 3 315 0 29 1 0 351 0 1 31 3 1 446 1 0 594 0 12 311 612 0 345 1 0 231 3 0 602 chain 24819 chr1 249250621 + 154038807 154039093 AluYk4 311 + 1 288 105776 41 0 1 245 chain 28270 chr1 249250621 + 154041156 154041461 L1PA3long 6157 + 5852 6157 92047 305 chain 32226 chr1 249250621 + 154043793 154044802 L1PB1 5432 - 10 648 80475 18 1 0 12 0 1 21 1 0 24 60 46 4 1 0 13 8 7 32 26 24 53 2 0 8 402 56 87 0 2 157 4 5 46 11 4 18 chain 5279 chr1 249250621 + 154055210 154055270 LTR12_ 688 - 133 193 192218 60 chain 13104 chr1 249250621 + 154063309 154063487 L1MB3 1562 + 931 1106 147828 40 1 0 123 2 0 12 chain 17373 chr1 249250621 + 154068425 154068649 L1PA7 6471 - 3 228 134588 138 10 11 76 chain 23379 chr1 249250621 + 154079695 154079965 AluY 311 + 26 298 113762 105 0 2 165 chain 15239 chr1 249250621 + 154081606 154081836 L1M1 2793 + 2452 2684 140665 72 0 2 64 8 10 25 8 7 40 2 1 11 chain 48019 chr1 249250621 + 154092225 154092757 L1PA5 6144 - 354 890 60467 495 0 4 37 chain 31198 chr1 249250621 + 154092757 154093115 L1PA5 6144 + 5788 6144 82166 347 2 0 9 chain 28947 chr1 249250621 + 154098232 154098543 AluYa5 310 - 0 310 89237 184 1 0 126 chain 27440 chr1 249250621 + 154106931 154107230 AluYf4 310 + 0 300 94851 212 0 1 87 chain 8062 chr1 249250621 + 154133251 154133349 Tigger4a 237 + 16 121 170688 86 0 7 12 chain 25016 chr1 249250621 + 154184337 154184632 AluSp 311 - 17 311 104703 182 1 0 112 chain 4365 chr1 249250621 + 154217135 154217330 MER21B 843 - 361 596 202397 20 34 39 14 85 120 42 chain 21822 chr1 249250621 + 154218114 154218383 AluY 311 + 5 275 120934 94 0 1 26 5 0 47 0 5 97 chain 3434 chr1 249250621 + 154254948 154254985 MER4E1 777 + 663 700 216510 37 chain 10663 chr1 249250621 + 154255435 154255708 L1MA8 2339 + 1965 2212 157550 12 0 3 29 1 0 70 103 81 36 6 0 16 chain 20099 chr1 249250621 + 154258135 154258488 MER51B 395 - 7 395 126833 79 3 15 37 51 50 8 1 0 93 0 6 34 7 26 40 chain 135927 chr1 249250621 + 154259375 154260902 SVA_D 2077 + 14 2077 26850 673 0 40 163 0 498 13 5 1 10 0 1 25 0 1 638 chain 23686 chr1 249250621 + 154262032 154262318 MER4E1 777 - 490 777 112117 40 0 1 246 chain 33332 chr1 249250621 + 154264032 154264489 LTR15 485 - 7 464 78683 21 0 1 14 2 0 6 1 0 157 0 4 118 5 7 24 4 0 22 0 1 20 8 7 55 chain 4031 chr1 249250621 + 154273265 154273310 MER41A 554 + 396 441 206917 45 chain 4126 chr1 249250621 + 154277431 154277476 MLT2C2 476 - 0 45 205573 45 chain 13917 chr1 249250621 + 154281774 154281989 THE1B 368 + 152 368 144865 17 6 5 12 6 8 113 6 5 18 0 1 37 chain 13947 chr1 249250621 + 154284670 154284837 MER11B 1079 - 912 1079 144767 167 chain 28292 chr1 249250621 + 154286701 154287078 MER41A 554 + 118 499 91973 63 7 8 22 7 10 278 chain 107397 chr1 249250621 + 154288099 154290416 MER41-int 2638 + 85 2473 34866 18 18 9 58 825 898 195 5 10 12 1 6 6 0 1 22 3 4 125 3 5 230 1 0 110 3 0 62 0 1 18 2 0 76 0 1 40 7 5 434 1 0 42 chain 32905 chr1 249250621 + 154290921 154291684 MER41A 554 + 0 554 79363 146 20 113 229 315 13 53 chain 20248 chr1 249250621 + 154293933 154294208 MER41-int 2638 - 569 844 126386 72 5 3 42 0 1 68 0 2 6 2 0 23 0 1 57 chain 9468 chr1 249250621 + 154308824 154308958 MER30 238 - 0 146 163228 100 3 0 10 4 19 17 chain 4299 chr1 249250621 + 154311218 154311265 U7 62 + 0 47 203212 47 chain 35655 chr1 249250621 + 154331369 154331826 MER41B 635 + 0 461 75329 128 0 1 131 0 7 99 5 0 23 0 1 71 chain 21912 chr1 249250621 + 154331841 154332207 THE1C 375 - 3 375 120583 22 1 0 142 27 22 5 0 2 25 16 0 9 20 40 6 0 1 53 0 5 40 chain 44287 chr1 249250621 + 154334405 154335029 MER4A 717 + 0 673 63836 45 0 1 76 0 1 4 1 0 125 0 7 9 0 5 93 1 41 82 4 0 94 7 10 16 7 4 60 chain 35085 chr1 249250621 + 154349552 154350006 MER75 514 - 4 460 76069 11 0 3 370 4 2 17 2 3 50 chain 3476 chr1 249250621 + 154353410 154353449 MER66C 541 - 118 157 215716 39 chain 16412 chr1 249250621 + 154366690 154366862 AluYa5 310 - 10 182 137178 172 chain 41306 chr1 249250621 + 154397266 154397729 LTR2 463 - 0 463 67527 463 chain 25062 chr1 249250621 + 154416684 154416981 AluSp 311 - 12 310 104497 218 1 2 78 chain 28843 chr1 249250621 + 154421351 154421670 AluYb8 318 - 1 318 89700 191 2 0 126 chain 80870 chr1 249250621 + 154433272 154434234 LTR13A 966 - 0 966 43242 302 1 3 56 1 0 234 1 0 294 0 4 73 chain 3106 chr1 249250621 + 154481115 154481150 MER81 114 + 21 56 222815 35 chain 4843 chr1 249250621 + 154491279 154491339 MER58A 224 - 138 198 196858 60 chain 9102 chr1 249250621 + 154502353 154502470 L1MDa 1598 - 305 428 165061 75 0 6 42 chain 100334 chr1 249250621 + 154503779 154505114 LTR12C 1709 - 0 1709 36682 66 32 31 384 20 13 32 0 366 343 13 10 170 0 17 10 0 2 265 chain 3726 chr1 249250621 + 154506690 154506731 MER58B 340 + 290 331 211546 41 chain 10214 chr1 249250621 + 154535070 154535287 Tigger3a 397 - 23 200 159548 20 19 21 15 0 2 98 2 0 13 42 0 8 chain 6885 chr1 249250621 + 154592517 154592598 L1MB2 1706 + 1611 1692 178311 81 chain 23038 chr1 249250621 + 154606490 154606768 AluY 311 + 16 292 115459 116 0 1 103 4 1 55 chain 25858 chr1 249250621 + 154607967 154608499 MER4A1 472 - 18 465 100614 125 28 0 43 40 68 34 0 8 75 96 2 72 6 7 13 chain 17878 chr1 249250621 + 154614743 154615070 L1MC1 2226 - 179 459 133167 56 2 0 7 8 5 65 1 0 26 7 1 31 1 0 6 4 0 5 30 0 78 chain 29365 chr1 249250621 + 154617967 154618277 AluYb8 318 - 0 310 87223 310 chain 8537 chr1 249250621 + 154621324 154621555 L1MB7 1623 - 436 694 168084 36 27 47 36 76 83 56 chain 11590 chr1 249250621 + 154643043 154643877 LTR12C 1709 + 0 941 30530 482 21 10 158 0 119 68 1 0 104 chain 48969 chr1 249250621 + 154643877 154644474 LTR12C 1709 + 1101 1708 51376 11 1 0 4 4 2 106 0 4 107 0 8 272 2 3 90 chain 405398 chr1 249250621 + 154644503 154649261 HERV9-int 5642 + 0 4724 9933 12 45 0 169 3 0 17 0 4 332 1 0 251 7 6 26 0 1 5 1 0 87 4 0 197 3 4 7 5 0 1324 1 0 138 4 5 806 0 18 1305 0 2 8 chain 53287 chr1 249250621 + 154650330 154650991 LTR12C 1709 + 0 650 48402 482 21 10 158 chain 10895 chr1 249250621 + 154651004 154651788 LTR12C 1709 + 941 1709 30530 171 1 0 4 4 2 66 17 0 40 0 4 481 chain 42112 chr1 249250621 + 154651881 154652385 MER9a1 513 + 0 513 66489 171 1 2 119 5 13 208 chain 19626 chr1 249250621 + 154658711 154658938 AluY 311 + 83 311 128318 49 0 1 178 chain 76697 chr1 249250621 + 154683144 154683979 L1PA4 6152 + 5316 6151 45124 835 chain 4275 chr1 249250621 + 154777244 154777360 MIR 256 - 115 234 203534 36 55 58 25 chain 5065 chr1 249250621 + 154777793 154777919 MER5B 177 + 29 138 194487 17 50 34 45 1 0 13 chain 3861 chr1 249250621 + 154778268 154778416 MLT1D 503 + 0 145 209443 29 0 1 5 88 84 26 chain 25872 chr1 249250621 + 154784736 154785024 L1PA5 6144 - 0 289 100558 220 0 1 68 chain 23320 chr1 249250621 + 154798266 154798551 AluY 311 + 24 311 114090 102 0 1 136 0 1 47 chain 13389 chr1 249250621 + 154850643 154850799 L1PA4 6152 + 5998 6152 146753 149 2 0 5 chain 7403 chr1 249250621 + 154877246 154877408 L1MA3 4352 - 0 145 174748 22 9 5 11 1 0 12 10 2 10 11 9 23 2 0 51 chain 16639 chr1 249250621 + 154889087 154889292 MSTA 426 - 9 218 136556 21 0 4 184 chain 24374 chr1 249250621 + 154956907 154957206 AluSp 311 + 0 304 108229 64 7 9 18 0 3 210 chain 13506 chr1 249250621 + 154996637 154996784 L1PA3long 6157 + 6009 6156 146349 147 chain 25091 chr1 249250621 + 155062816 155063107 AluSp 311 - 19 310 104341 291 chain 24532 chr1 249250621 + 155118361 155118665 AluSc5 308 - 3 308 107367 246 10 11 48 chain 12680 chr1 249250621 + 155120691 155120882 L1M1 2793 + 2493 2685 149529 5 3 0 16 0 5 83 0 1 26 1 0 33 12 11 12 chain 187769 chr1 249250621 + 155122774 155128955 L1MA2 4263 + 818 4114 20263 199 4 5 21 6 1 25 0 3 169 10 8 77 2567 512 35 5 6 4 1 0 41 8 10 31 1 0 226 2 0 7 0 2 45 4 5 195 315 0 77 10 11 7 0 1 103 6 4 53 5 0 39 476 0 154 0 1 4 1 0 9 1 2 169 0 2 85 6 5 49 40 0 112 0 2 104 2 8 12 0 1 47 0 8 52 1 0 18 7 3 75 1 0 134 13 10 17 20 30 10 1 0 50 0 1 5 2 0 37 11 9 93 7 0 18 10 9 19 1 0 10 chain 2786 chr1 249250621 + 155134430 155134462 MLT2D 439 - 407 439 228915 32 chain 10482 chr1 249250621 + 155137168 155137335 L1PA11 4918 - 410 576 158325 13 0 3 4 1 0 10 16 16 55 2 0 12 1 0 53 chain 24482 chr1 249250621 + 155163819 155164105 AluSg4 309 + 5 291 107648 118 1 0 32 0 1 135 chain 23368 chr1 249250621 + 155176333 155176661 AluSq2 311 + 10 298 113827 123 28 2 154 14 0 9 chain 25485 chr1 249250621 + 155219390 155219697 AluY 311 + 2 303 102291 132 0 1 34 7 0 134 chain 29346 chr1 249250621 + 155244508 155244817 AluYf4 310 + 0 309 87316 309 chain 13481 chr1 249250621 + 155253214 155253358 L1PA2 6032 - 18 162 146409 144 chain 23676 chr1 249250621 + 155261012 155261298 AluSc 308 + 6 292 112174 286 chain 25408 chr1 249250621 + 155268124 155268416 AluSp 311 - 17 310 102643 162 2 0 38 0 3 90 chain 21388 chr1 249250621 + 155276502 155276750 LTR12C 1709 - 0 247 122553 84 1 0 163 chain 5237 chr1 249250621 + 155277003 155277063 MER51B 395 + 335 395 192654 60 chain 21408 chr1 249250621 + 155277131 155277466 MER41A 554 + 0 352 122483 232 55 72 48 chain 5783 chr1 249250621 + 155328531 155328596 U6 107 - 29 94 187334 65 chain 11325 chr1 249250621 + 155334735 155334895 MER41B 635 + 481 627 154983 8 2 0 90 13 1 47 chain 26037 chr1 249250621 + 155338955 155339251 AluY 311 + 3 296 99870 129 3 0 164 chain 40539 chr1 249250621 + 155357092 155357823 L1PREC2 3366 - 342 1031 68536 12 8 6 34 24 10 10 11 8 21 2 0 10 75 59 4 1 0 44 1 0 32 7 3 19 2 0 41 1 0 132 7 11 233 chain 20450 chr1 249250621 + 155368113 155368424 Tigger3b 1229 - 65 401 125760 47 7 37 100 1 0 4 5 6 10 6 5 24 4 0 103 chain 25081 chr1 249250621 + 155387471 155387763 AluSp 311 + 4 296 104397 292 chain 5020 chr1 249250621 + 155392351 155392415 Tigger2 2703 - 1565 1632 194932 58 0 3 6 chain 44781 chr1 249250621 + 155398256 155398799 MER9a2 513 + 0 513 63312 286 32 0 129 0 2 96 chain 21423 chr1 249250621 + 155404375 155404661 AluSx3 311 + 14 302 122431 136 11 3 28 0 10 111 chain 20353 chr1 249250621 + 155457726 155457963 AluSg7 307 - 57 295 126052 123 0 1 114 chain 3570 chr1 249250621 + 155466076 155466116 Tigger3b 1229 - 1137 1177 214141 40 chain 31657 chr1 249250621 + 155475636 155476001 L1PA5 6144 - 5 370 81392 365 chain 4945 chr1 249250621 + 155482910 155483067 L1MB3 1562 + 898 1059 195747 15 32 38 10 23 22 46 8 7 23 chain 29279 chr1 249250621 + 155487580 155487890 AluYa5 310 - 0 310 87652 310 chain 14179 chr1 249250621 + 155517784 155518030 L1PA8 5853 + 5521 5762 143957 43 1 0 45 2 0 61 24 23 21 30 29 19 chain 27151 chr1 249250621 + 155537099 155537390 AluYd8 298 - 8 298 95759 176 1 0 114 chain 28302 chr1 249250621 + 155548298 155548600 AluYk11 308 - 6 308 91939 302 chain 39541 chr1 249250621 + 155559204 155559733 MLT2A2 560 - 0 543 69971 88 9 12 47 3 14 382 chain 78240 chr1 249250621 + 155569327 155570296 LTR5_Hs 974 - 0 974 44395 103 8 7 8 1 0 22 8 15 163 1 0 188 0 1 467 chain 22794 chr1 249250621 + 155576981 155577259 AluSc5 308 - 26 303 116612 180 1 0 97 chain 51674 chr1 249250621 + 155592826 155593458 LTR14B 630 - 0 630 57844 69 1 6 481 8 1 73 chain 44173 chr1 249250621 + 155593745 155594251 MER9a2 513 + 0 507 63978 443 0 1 63 chain 75581 chr1 249250621 + 155596456 155597424 LTR5_Hs 974 - 0 974 45727 103 20 18 19 8 15 164 1 0 187 0 1 177 0 1 289 chain 537323 chr1 249250621 + 155598204 155604668 HERVK-int 6823 - 241 6823 3273 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 20 13 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 58 9 297 3658 1 0 7 2 0 372 1 0 439 1 0 313 1 0 18 1 0 26 2 0 205 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 75581 chr1 249250621 + 155604668 155605636 LTR5_Hs 974 - 0 974 45726 103 20 18 19 8 15 164 1 0 187 0 1 177 0 1 289 chain 23757 chr1 249250621 + 155610892 155611170 AluSp 311 - 33 311 111729 278 chain 80323 chr1 249250621 + 155611972 155613010 MER11A 1151 - 0 1151 43464 262 7 0 27 5 28 28 2 1 416 0 1 60 0 2 32 4 0 64 1 0 76 0 99 27 4 5 23 chain 23532 chr1 249250621 + 155620912 155621214 AluY 311 + 4 296 112948 119 13 3 170 chain 43139 chr1 249250621 + 155661623 155662164 LTR14 556 - 4 556 65245 293 2 13 246 chain 43826 chr1 249250621 + 155668768 155669312 LTR14 556 - 0 555 64414 297 2 13 245 chain 13824 chr1 249250621 + 155670298 155670566 SVA_F 1814 + 873 1026 103348 15 1 47 12 177 16 63 chain 7261 chr1 249250621 + 155670326 155670467 SVA_F 1814 + 962 1104 135168 38 0 1 103 chain 83716 chr1 249250621 + 155670566 155671489 SVA_F 1814 + 666 1814 42030 63 0 233 64 5 0 151 2 0 10 1 0 627 chain 40789 chr1 249250621 + 155681408 155681953 MLT2A2 560 - 0 559 68190 88 9 12 47 3 14 398 chain 23705 chr1 249250621 + 155690151 155690471 AluSp 311 + 0 304 112003 92 9 3 202 10 0 7 chain 6999 chr1 249250621 + 155692360 155692441 LTR12E 1234 + 925 1006 177466 81 chain 4305 chr1 249250621 + 155758479 155758552 L1ME2z 1083 + 822 893 203156 44 1 0 4 9 8 15 chain 25282 chr1 249250621 + 155760454 155760742 AluSc5 308 + 0 288 103306 288 chain 6637 chr1 249250621 + 155770826 155770904 LTR12F 595 + 402 480 180192 78 chain 58266 chr1 249250621 + 155804617 155805269 SVA_D 2077 + 1264 2075 53829 48 1 148 269 0 10 138 0 2 196 chain 21909 chr1 249250621 + 155824556 155824842 AluSp 311 + 12 297 120587 196 5 6 22 5 3 58 chain 7037 chr1 249250621 + 155864071 155864180 U4 144 + 0 144 177196 35 3 14 34 1 25 36 chain 23622 chr1 249250621 + 155865547 155865836 AluSg7 307 - 12 296 112460 99 6 0 64 0 1 120 chain 26065 chr1 249250621 + 155956006 155956299 AluYa5 310 - 16 310 99775 17 1 3 181 1 0 93 chain 83998 chr1 249250621 + 155957393 155958430 MER11C 1089 + 0 1056 41905 55 5 8 89 1 0 94 0 9 62 0 4 65 1 0 160 8 9 135 0 4 5 1 0 38 0 1 318 chain 11747 chr1 249250621 + 155976178 155976323 MER47A 366 + 176 321 153268 145 chain 23525 chr1 249250621 + 156075636 156075940 AluY 311 + 9 297 112986 114 20 4 170 chain 76060 chr1 249250621 + 156149013 156149981 LTR5_Hs 974 + 0 974 45440 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 77863 chr1 249250621 + 156151251 156152212 LTR5_Hs 974 + 0 974 44581 19 0 2 148 1 0 298 0 1 351 10 17 35 2 0 20 0 6 77 chain 227226 chr1 249250621 + 156154415 156157858 HERVK22-int 3844 - 0 3830 17473 86 15 14 74 0 653 220 0 47 24 13 14 43 23 32 25 1 3 10 40 46 49 1 0 215 1 0 11 1 2 68 0 1 280 0 1 103 0 5 131 1 0 67 0 2 46 0 4 52 7 8 143 7 14 79 37 38 741 34 5 124 326 0 51 8 13 286 chain 28540 chr1 249250621 + 156157201 156157512 AluYa5 310 + 0 310 90998 132 1 0 178 chain 76285 chr1 249250621 + 156161955 156162879 LTR13 1007 + 0 968 45318 121 0 4 252 0 34 273 0 2 13 2 0 116 5 6 87 0 5 55 chain 25620 chr1 249250621 + 156174837 156175132 AluSp 311 - 15 311 101623 238 0 1 57 chain 34500 chr1 249250621 + 156186656 156187036 L1PA2 6032 + 5651 6031 76906 380 chain 26256 chr1 249250621 + 156200733 156201036 AluY 311 + 9 311 98988 100 1 0 202 chain 25037 chr1 249250621 + 156276743 156277035 AluSg4 309 + 2 295 104609 123 0 1 169 chain 142169 chr1 249250621 + 156297052 156298662 SVA_D 2077 + 0 2077 25789 5 1 0 5 1 0 6 1 0 12 0 8 351 0 3 152 0 40 173 0 37 16 0 40 61 0 278 160 1 0 7 0 65 658 chain 25118 chr1 249250621 + 156319043 156319338 AluSq10 312 + 0 305 104186 60 0 10 235 chain 13190 chr1 249250621 + 156333835 156334188 MLT1A 405 - 41 367 147509 27 1 0 23 0 1 12 66 58 25 65 43 42 16 18 57 0 1 19 chain 17257 chr1 249250621 + 156344113 156344755 L1MA5A 2387 - 91 383 134904 31 11 0 27 0 1 7 42 15 18 1 0 10 2 0 32 2 0 35 0 3 9 1 0 37 310 1 36 2 1 29 chain 29847 chr1 249250621 + 156368509 156368827 AluYb8 318 - 0 318 85293 318 chain 26009 chr1 249250621 + 156432329 156432631 AluSp 311 - 13 311 99978 241 4 0 57 chain 24981 chr1 249250621 + 156448322 156448621 AluSp 311 - 12 311 104902 299 chain 9126 chr1 249250621 + 156453891 156453997 HY1 111 - 0 106 164936 106 chain 25503 chr1 249250621 + 156475411 156475695 AluSx4 309 + 1 285 102212 284 chain 45563 chr1 249250621 + 156526721 156527542 SVA_F 1814 + 609 1219 62446 154 2 42 77 2 0 6 174 0 60 0 15 38 1 0 80 0 1 25 49 0 70 1 0 25 41 0 12 0 1 4 chain 2422 chr1 249250621 + 156526962 156527000 SVA_F 1814 + 1001 1039 126516 38 chain 8465 chr1 249250621 + 156527000 156527129 SVA_F 1814 + 925 1043 116102 4 46 33 38 0 1 37 0 1 4 chain 2932 chr1 249250621 + 156527004 156527050 SVA_F 1814 + 1043 1089 126516 46 chain 4313 chr1 249250621 + 156527542 156527587 SVA_F 1814 + 1169 1214 177491 45 chain 1812 chr1 249250621 + 156527606 156527630 SVA_E 1901 + 850 874 69514 24 chain 103490 chr1 249250621 + 156527630 156528930 SVA_E 1901 + 669 1901 35867 60 7 6 10 126 59 8 1 0 5 1 0 110 4 0 39 5 12 117 1 0 806 chain 8229 chr1 249250621 + 156527707 156527816 SVA_E 1901 + 947 1057 69514 105 0 1 4 chain 26110 chr1 249250621 + 156536653 156536958 AluSp 311 - 7 311 99577 121 1 0 183 chain 23088 chr1 249250621 + 156546839 156547515 Tigger3c 601 + 201 578 115206 116 336 37 29 19 23 113 4 0 59 chain 8183 chr1 249250621 + 156547538 156547633 MER34C2 569 + 462 557 170051 95 chain 16020 chr1 249250621 + 156664628 156664867 AluSz6 309 + 11 252 138307 36 33 36 28 1 0 141 chain 24179 chr1 249250621 + 156752704 156752996 AluSp 311 - 19 311 109323 86 1 2 162 1 0 42 chain 96797 chr1 249250621 + 156788490 156790861 L1PB2 3958 - 120 1469 37615 63 5 4 18 2 0 70 3 2 63 1 0 55 329 0 18 1 0 71 8 9 13 4 0 14 2 0 61 326 0 14 1 0 16 0 1 9 30 29 47 1 0 42 1 0 250 311 1 44 1 0 378 42 0 57 chain 74518 chr1 249250621 + 156888231 156889245 Tigger1 2417 + 1210 2251 46263 131 0 20 183 6 9 40 3 0 179 0 1 34 0 3 134 0 1 22 2 1 68 1 3 161 7 9 25 1 0 17 chain 29339 chr1 249250621 + 156961502 156961807 AluYa5 310 - 5 310 87349 305 chain 23291 chr1 249250621 + 156966331 156966586 AluY 311 + 48 304 114249 84 0 1 171 chain 3294 chr1 249250621 + 156989964 156990010 L1MA10 1535 + 1413 1456 219094 27 3 0 16 chain 19278 chr1 249250621 + 157005193 157005413 AluSp 311 - 8 228 129292 220 chain 12396 chr1 249250621 + 157019429 157019586 MER30 238 + 52 238 150649 54 3 32 100 chain 175982 chr1 249250621 + 157034155 157036222 L1PA6 6164 - 2 2074 21355 8 0 1 87 0 1 307 0 1 102 3 0 142 10 11 186 0 3 454 0 2 30 5 6 172 2 0 559 chain 4235 chr1 249250621 + 157047569 157047615 MER63A 208 + 81 127 204108 46 chain 8928 chr1 249250621 + 157058789 157058901 Tigger3b 1229 + 353 468 165996 48 0 3 64 chain 2294 chr1 249250621 + 157082637 157082690 MER81 114 - 21 76 235428 15 2 3 9 7 8 20 chain 45126 chr1 249250621 + 157175764 157176269 L1PA4 6152 + 5645 6149 62901 496 1 0 8 chain 299521 chr1 249250621 + 157181316 157185367 L1PA10 4194 - 33 4019 13452 11 1 0 34 23 21 343 0 1 230 15 11 380 0 1 161 6 5 259 7 12 871 1 0 17 7 6 70 0 1 6 1 0 434 7 0 656 0 2 129 18 16 9 1 0 72 1 0 8 4 0 13 7 0 7 2 1 10 2 1 7 1 0 21 2 0 13 70 43 8 2 0 18 7 12 10 3 1 10 8 4 9 2 0 8 6 3 8 2 0 13 chain 7025 chr1 249250621 + 157200949 157201033 MER30 238 + 146 230 177292 84 chain 2824 chr1 249250621 + 157203124 157203184 MER21-int 1364 + 109 162 228411 12 19 12 29 chain 260029 chr1 249250621 + 157211581 157214491 L1PA4 6152 - 22 2944 15694 734 0 3 52 0 2 987 0 4 33 6 7 457 3 5 638 chain 75909 chr1 249250621 + 157217495 157218608 L1PB1 5432 + 4337 5409 45533 198 12 11 82 11 6 170 0 2 9 4 0 288 1 2 12 3 0 17 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 24 12 19 3 0 19 2 0 24 1 0 21 1 0 13 1 0 5 chain 3352 chr1 249250621 + 157220877 157221225 MLT2D 439 + 43 344 218011 40 287 240 21 chain 543568 chr1 249250621 + 157223697 157229843 L1PA4 6152 + 8 6140 2259 414 44 0 159 0 4 972 0 2 156 0 1 284 0 5 320 0 15 1145 0 1 150 0 2 616 1 0 69 0 1 1816 chain 7240 chr1 249250621 + 157244959 157245252 HERVFH21-int 991 - 64 265 175838 8 2 0 10 1 0 19 83 30 41 1 0 9 7 3 18 19 0 13 41 29 21 chain 4839 chr1 249250621 + 157250782 157250840 Tigger3b 1229 - 1148 1206 196898 58 chain 510136 chr1 249250621 + 157263764 157270163 L1PA7 6471 + 12 6457 6152 121 20 48 231 1 0 14 4 13 459 37 46 38 11 0 91 0 1 111 0 10 396 0 1 41 0 2 62 0 1 211 1 2 97 0 1 621 4 2 65 1 3 799 2 0 37 0 1 55 11 1 594 0 1 176 1 0 4 0 1 975 1 2 190 5 6 77 4 3 61 27 29 182 0 2 561 chain 490277 chr1 249250621 + 157285054 157292330 L1PA6 6164 + 0 6162 7351 316 5 7 126 19 0 120 1 0 218 0 17 205 1 0 1325 14 6 123 7 0 505 11 12 197 2 1 726 0 2 90 1098 7 290 6 0 386 1 0 120 0 1 916 1 2 280 6 7 151 4 0 6 chain 84548 chr1 249250621 + 157289071 157290156 MER11B 1079 - 0 1079 41703 29 7 9 164 0 1 102 6 8 25 21 11 707 1 0 23 chain 13455 chr1 249250621 + 157297957 157298170 LTR8 732 - 463 716 146498 24 31 47 72 0 15 70 0 9 16 chain 181352 chr1 249250621 + 157298746 157301312 MER4-int 2692 + 74 2692 20866 25 2 0 6 2 0 9 6 4 4 1 0 155 1 0 5 0 1 115 0 1 36 2 1 201 0 1 43 0 1 41 4 0 86 1 0 176 7 6 35 1 19 39 1 4 14 1 0 71 1 2 219 0 16 24 1 0 31 9 10 111 7 12 147 13 16 38 0 7 70 1 0 15 1 0 51 1 0 63 0 1 7 0 2 59 8 7 106 1 0 66 18 28 6 2 0 166 2 1 12 5 4 28 1 0 12 1 0 55 0 10 76 2 1 40 chain 100249 chr1 249250621 + 157306977 157309998 L1PA7 6471 - 19 3064 13245 320 7 12 267 9 0 18 0 10 203 2 1 75 2 3 387 24 29 24 0 1 153 1 0 274 0 4 168 0 4 265 1 0 28 0 1 19 0 1 342 13 7 229 0 1 19 0 4 26 3 8 142 chain 458392 chr1 249250621 + 157310094 157315228 L1PA3long 6157 - 15 6157 8459 324 1 0 1183 1 0 567 5 6 1742 0 1 783 0 1 370 0 3 61 0 1004 97 chain 29567 chr1 249250621 + 157315245 157316136 L1PA7 6471 - 3064 3960 13245 167 7 8 73 0 1 42 1 2 320 0 1 157 6 7 118 chain 8001 chr1 249250621 + 157318529 157318635 MSTB-int 1649 - 1454 1588 171059 47 0 4 52 0 24 7 chain 125130 chr1 249250621 + 157320035 157321603 THE1B-int 1605 - 7 1605 29349 157 0 1 849 0 1 139 0 25 287 2 4 12 0 1 122 chain 23627 chr1 249250621 + 157321603 157321977 THE1B 368 - 0 368 112427 173 75 69 126 chain 4910 chr1 249250621 + 157326248 157326416 MLT2B4 540 - 370 540 196164 6 0 1 31 95 96 36 chain 26533 chr1 249250621 + 157326630 157327003 PABL_A 660 + 0 401 97924 85 1 0 4 0 1 93 1 2 39 0 44 66 17 0 67 chain 112371 chr1 249250621 + 157327575 157329148 PABL_A-int 1935 + 296 1870 33570 36 0 1 6 1 0 18 2 1 51 1 3 73 23 24 53 1 0 4 0 1 318 0 1 37 2 0 65 1 0 108 2 1 167 1 6 51 1 0 86 0 1 34 1 0 227 12 13 46 1 0 42 0 1 66 8 7 10 2 0 16 chain 78700 chr1 249250621 + 157334639 157336006 MER61-int 3695 - 0 3695 44187 29 15 9 8 0 6 486 13 12 119 105 106 22 59 55 75 1 0 52 14 15 229 53 2391 35 1 0 14 9 4 28 chain 17062 chr1 249250621 + 157357310 157357538 L1PA10 4194 - 44 269 135425 34 3 0 191 chain 36175 chr1 249250621 + 157368733 157369199 LTR2 463 - 0 463 74668 85 15 16 133 6 2 227 chain 42786 chr1 249250621 + 157402847 157403521 LTR66 600 + 0 531 65674 398 142 0 11 2 0 48 0 1 73 chain 44023 chr1 249250621 + 157411508 157412146 PABL_A 660 - 8 660 64179 24 50 52 225 13 14 102 0 7 165 0 4 59 chain 112541 chr1 249250621 + 157415227 157416635 LTR12C 1709 - 0 1709 33522 84 2 1 253 4 33 110 21 14 96 3 1 5 1 0 183 0 280 184 0 1 167 0 1 17 0 1 278 chain 44954 chr1 249250621 + 157418153 157418722 PABL_A 660 - 88 660 63115 62 0 2 301 8 9 198 chain 436649 chr1 249250621 + 157427106 157432717 HERVL-int 5654 - 0 5654 9145 59 1 5 9 22 26 17 0 1 51 0 3 6 1 0 256 32 8 201 0 1 87 0 5 52 1 16 364 1 5 402 6 7 107 0 1 125 0 16 36 6 18 60 2 0 166 0 3 5 0 1 318 8 7 707 3 0 669 17 17 71 0 4 8 9 10 145 0 2 22 67 61 396 1 2 35 1 2 386 0 1 23 1 0 436 0 1 146 1 0 66 chain 22828 chr1 249250621 + 157434927 157435339 MSTA 426 + 0 426 116451 88 24 25 93 56 57 37 14 22 90 0 4 10 chain 3913 chr1 249250621 + 157448284 157448330 L1M3e 1964 - 745 791 208646 46 chain 190517 chr1 249250621 + 157469845 157473164 MER61-int 3695 + 0 2659 19997 46 1 0 148 39 0 66 13 12 138 1 2 139 0 1 54 0 1 33 1 97 26 0 1 28 3 8 12 10 19 15 0 5 238 8 1 33 2 1 121 0 2 290 760 25 61 0 5 65 0 2 5 3 1 82 11 12 167 9 5 143 1 2 547 chain 58411 chr1 249250621 + 157471318 157472062 MER4E 760 - 7 760 53739 387 3 5 71 0 4 119 13 16 46 2 1 83 1 2 19 chain 120646 chr1 249250621 + 157497742 157499753 L1PB1 5432 + 3452 5430 30817 64 3 0 8 7 0 3 0 7 157 86 91 103 0 1 106 1 0 142 2 6 213 2 0 6 17 21 20 4 0 12 0 2 20 0 1 181 5 7 82 11 16 7 0 4 161 0 1 209 36 10 25 1 0 4 3 2 14 17 11 17 0 5 29 2 1 15 1 0 36 99 82 15 10 9 13 1 0 13 1 0 21 1 0 5 chain 83543 chr1 249250621 + 157506551 157507589 MER11B 1079 + 0 1048 42099 316 1 18 249 5 2 5 0 3 102 1 0 77 8 2 274 chain 98899 chr1 249250621 + 157518124 157519227 L1PA4 6152 + 5040 6143 37051 1103 chain 68868 chr1 249250621 + 157525616 157526383 L1PA3long 6157 + 5387 6157 48866 440 0 3 327 chain 52605 chr1 249250621 + 157528954 157529536 L1PA4 6152 - 12 594 57236 582 chain 3244 chr1 249250621 + 157561530 157561566 MER67C 710 + 10 46 220137 36 chain 64286 chr1 249250621 + 157561650 157562407 L1PA6 6164 + 4769 5537 50885 266 1 0 230 0 1 30 0 4 17 0 6 209 0 1 4 chain 52849 chr1 249250621 + 157562409 157563027 L1PA6 6164 + 5538 6156 57103 618 chain 4292 chr1 249250621 + 157572653 157572706 MER115 684 + 505 558 203336 53 chain 107342 chr1 249250621 + 157578916 157580108 L1P1 4361 - 300 1492 34880 1192 chain 2884 chr1 249250621 + 157580426 157580467 L1PB2 3958 + 3584 3624 227277 33 1 0 7 chain 2644 chr1 249250621 + 157625874 157625947 L1MEf 1413 + 548 609 231099 17 4 5 23 0 3 5 16 0 8 chain 110216 chr1 249250621 + 157633763 157635153 L1P2 5180 + 2320 3754 34152 7 0 1 650 0 37 549 0 1 15 0 4 110 12 13 47 chain 28384 chr1 249250621 + 157637262 157637567 AluYf4 310 + 0 305 91648 305 chain 28561 chr1 249250621 + 157642933 157643401 L1PA15 4387 - 22 468 90919 9 1 0 27 5 0 14 3 1 11 3 4 17 4 1 11 6 3 52 1 0 8 4 0 22 1 0 55 1 0 25 2 1 171 1 0 14 chain 112809 chr1 249250621 + 157651034 157652283 L1PA4 6152 - 1 1250 33441 1249 chain 20138 chr1 249250621 + 157672603 157672948 THE1B 368 - 11 352 126718 23 6 7 134 23 16 31 38 39 59 0 1 31 chain 14092 chr1 249250621 + 157674954 157675135 L1PA11 4918 - 1891 2079 144249 90 0 3 78 0 4 13 chain 103794 chr1 249250621 + 157675141 157676753 L1PA11 4918 + 3044 4629 35773 154 0 1 368 18 34 65 18 17 5 0 1 90 35 36 178 0 1 331 10 0 60 11 10 7 2 0 70 2 0 16 7 6 14 133 103 18 chain 57552 chr1 249250621 + 157698625 157699296 L1PA4 6152 + 5479 6152 54209 26 0 1 415 0 1 38 1 0 38 5 6 148 chain 55372 chr1 249250621 + 157707296 157707950 L1PA7 6471 + 5813 6466 55476 68 0 1 254 1 2 321 3 0 7 chain 41937 chr1 249250621 + 157707953 157708602 L1P4a 3072 - 2346 2974 66703 186 1 0 34 1 0 48 1 0 5 1 0 132 7 8 27 12 11 32 9 0 74 0 9 10 10 1 26 7 0 5 1 0 20 chain 26796 chr1 249250621 + 157721950 157722306 THE1B 368 + 0 368 96994 44 0 15 115 1 0 20 2 1 98 1 0 75 chain 42406 chr1 249250621 + 157723874 157724416 MER41A 554 + 11 554 66140 76 5 6 461 chain 8617 chr1 249250621 + 157727179 157727287 L1PA7 6471 + 6362 6470 167646 108 chain 25070 chr1 249250621 + 157728765 157729089 THE1C 375 + 0 335 104459 168 0 10 6 1 2 149 chain 11893 chr1 249250621 + 157764082 157764231 THE1C 375 + 206 354 152634 144 1 0 4 chain 4440 chr1 249250621 + 157769330 157769397 L1P1 4361 - 20 85 201447 12 2 1 23 1 0 29 chain 17540 chr1 249250621 + 157769397 157769591 L1PA4 6152 + 5958 6151 134155 39 1 0 154 chain 3339 chr1 249250621 + 157791576 157791615 L1MA6 2487 - 108 147 218234 39 chain 23702 chr1 249250621 + 157791996 157792258 AluY 311 + 49 311 112019 262 chain 72687 chr1 249250621 + 157817483 157818293 L1PA5 6144 + 5330 6140 47177 810 chain 4629 chr1 249250621 + 157823394 157823458 MLT1C 463 - 52 112 199312 7 4 0 53 chain 3128 chr1 249250621 + 157823458 157823495 L1P4 1494 - 745 782 222394 37 chain 11969 chr1 249250621 + 157823542 157823673 L1PA4 6152 - 2 133 152324 131 chain 52308 chr1 249250621 + 157830268 157830880 L1PA5 6144 - 0 616 57423 154 0 1 177 0 2 228 0 1 53 chain 39273 chr1 249250621 + 157846876 157847329 L1PA6 6164 + 5709 6162 70363 453 chain 172865 chr1 249250621 + 157853661 157855806 HERVL-int 5654 + 3490 5634 21725 202 1 2 220 0 2 332 0 1 4 1 0 114 0 4 308 0 1 545 20 5 55 3 1 166 0 3 58 0 5 116 chain 24077 chr1 249250621 + 157865999 157866342 THE1A 353 - 11 353 109887 29 11 12 105 1 0 86 15 14 96 chain 128849 chr1 249250621 + 157866342 157867914 THE1A-int 1579 - 0 1579 28346 108 0 2 473 0 2 631 1 2 252 0 2 107 chain 515308 chr1 249250621 + 157871674 157878448 L1PA6 6164 + 0 6159 5634 357 33 49 103 2 1 18 0 28 426 1 0 20 0 16 428 1 0 70 0 1 817 4 2 454 2 0 399 0 1 513 1 0 616 1 0 359 1 2 167 0 5 463 1 0 664 673 0 180 chain 12631 chr1 249250621 + 157877597 157877772 L1PA6 6164 + 5982 6160 149724 20 1 2 131 0 1 11 0 1 12 chain 6730 chr1 249250621 + 157880959 157881079 MSTB2-int 240 + 85 197 179470 31 1 0 35 19 12 34 chain 4305 chr1 249250621 + 157885102 157885155 MER70B 575 + 63 117 203158 4 0 1 49 chain 10195 chr1 249250621 + 157902305 157902418 L1PA5 6144 - 8 121 159650 113 chain 23415 chr1 249250621 + 158022291 158022584 AluY 311 + 4 291 113564 129 7 1 157 chain 26800 chr1 249250621 + 158072233 158072681 LTR7B 505 - 14 505 96984 37 14 13 54 0 1 21 1 0 46 0 1 8 0 88 27 66 11 66 0 10 108 chain 18889 chr1 249250621 + 158078599 158078954 MSTA 426 - 21 419 130395 60 18 37 42 32 30 33 3 4 43 23 48 101 chain 111394 chr1 249250621 + 158105397 158106638 L1PA4 6152 - 6 1248 33837 1235 0 1 6 chain 40140 chr1 249250621 + 158117567 158118088 MER51A 677 + 0 661 69128 59 1 0 117 0 135 52 0 1 169 5 6 54 0 4 64 chain 19084 chr1 249250621 + 158157602 158157891 L1PA16 3655 - 36 298 129868 16 5 0 7 40 18 221 chain 78279 chr1 249250621 + 158162041 158163088 MER11C 1089 + 0 1063 44384 247 7 16 54 0 4 65 1 0 177 42 41 86 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 3007 chr1 249250621 + 158164895 158164942 L1MA4 2864 - 63 114 224887 28 2 6 17 chain 137285 chr1 249250621 + 158180005 158181953 L1PB2 3958 - 120 2032 26591 63 1 0 19 10 8 66 2 1 50 1 0 14 1 0 76 2 1 88 4 0 14 2 0 64 6 0 13 1 0 49 5 3 164 13 3 216 3 2 94 8 2 319 13 1 9 0 7 13 0 2 137 0 1 77 4 5 187 0 5 36 1 0 103 chain 540678 chr1 249250621 + 158185590 158191737 L1PA4 6152 - 0 6152 2712 6 4 0 199 0 1 1317 1 0 197 1 0 144 0 2 679 0 1 1040 0 3 885 0 6 823 2 1 272 1 0 576 chain 114589 chr1 249250621 + 158192827 158194311 THE1B-int 1605 + 58 1597 32925 288 5 6 80 10 35 228 8 9 340 4 1 132 0 29 92 0 2 297 chain 43827 chr1 249250621 + 158197004 158197631 LTR76 689 + 7 667 64413 7 0 8 25 1 0 82 8 28 224 0 6 4 0 1 157 2 1 41 15 16 30 7 6 24 chain 91227 chr1 249250621 + 158202916 158203980 L1HS 6032 - 3822 4879 39224 134 18 11 912 chain 88387 chr1 249250621 + 158203980 158205474 L1P3 4156 + 2663 4128 40134 40 0 4 775 0 1 4 4 3 40 23 307 236 314 0 33 12 9 13 chain 478620 chr1 249250621 + 158207059 158212448 L1PA3long 6157 + 635 6157 7778 141 0 128 676 0 1 1521 0 1 361 1 2 48 0 1 305 8 9 82 0 1 1992 1 0 253 chain 70545 chr1 249250621 + 158237416 158238182 L1HS 6032 - 481 1247 48138 766 chain 45180 chr1 249250621 + 158238182 158238659 L1HS 6032 + 5555 6032 62842 477 chain 146955 chr1 249250621 + 158238940 158241073 L1PB2 3958 + 1729 3838 25028 30 16 7 4 0 1 194 0 3 66 0 1 202 1 2 29 1 4 175 5 4 30 3 0 19 19 18 257 0 1 111 4 5 24 12 10 36 6 5 338 7 5 50 6 5 10 15 11 53 2 0 12 3 0 102 5 4 60 1 0 64 1 0 72 2 0 22 1 0 63 chain 23947 chr1 249250621 + 158246122 158246410 L1PA6 6164 - 2 288 110639 8 2 0 278 chain 55351 chr1 249250621 + 158246944 158247572 L1PA4 6152 - 1 634 55488 112 0 1 115 0 4 401 chain 203709 chr1 249250621 + 158247572 158249978 L1P1 4361 - 1942 4357 18945 41 1 3 10 0 1 1119 1 2 232 0 1 150 4 6 127 2 4 719 chain 55132 chr1 249250621 + 158250809 158251466 L1PA7 6471 - 32 690 55619 212 2 3 443 chain 98230 chr1 249250621 + 158251466 158252690 L1P3 4156 - 2195 3420 37230 214 0 1 501 2 1 388 8 9 111 chain 261507 chr1 249250621 + 158268241 158271752 L1P2 5180 - 457 3702 15616 18 1 0 4 0 1 34 5 6 19 0 1 505 0 1 83 0 1 90 1 0 226 0 1 38 3 31 485 3 2 104 0 1 9 0 1 182 3 10 101 1 0 376 310 0 24 0 1 49 1 0 179 0 3 381 0 2 31 1 2 220 3 2 21 chain 516707 chr1 249250621 + 158273744 158279779 L1PA4 6152 + 0 6152 5516 480 0 2 317 5 6 533 1 2 76 0 5 780 0 2 955 1 0 7 0 1 183 3 0 460 2 102 437 0 4 312 0 1 832 0 1 638 0 3 13 chain 533341 chr1 249250621 + 158284449 158290473 L1PA3long 6157 - 0 6157 3802 33 0 1 1282 8 7 4 0 1 179 5 6 932 4 0 420 1 0 120 0 1 1869 0 1 284 0 1 107 0 128 197 0 4 427 0 1 152 chain 515389 chr1 249250621 + 158305887 158312022 L1PA4 6152 + 10 6152 5627 61 0 1 234 2 4 642 0 1 1069 0 1 167 0 1 129 1 0 3665 1 0 151 0 3 13 chain 117796 chr1 249250621 + 158317912 158319335 LTR12C 1709 - 0 1709 31861 84 7 6 332 6 5 54 0 4 106 3 160 104 0 118 469 1 2 38 2 10 217 chain 59573 chr1 249250621 + 158321729 158322386 L1PA4 6152 - 1 660 53064 4 0 1 107 0 1 546 chain 105317 chr1 249250621 + 158330775 158331944 L1PA4 6152 - 1 1175 35421 843 0 4 237 0 1 89 chain 6415 chr1 249250621 + 158338253 158338327 MLT1A0 366 - 50 124 181909 74 chain 120392 chr1 249250621 + 158342920 158344507 LTR12C 1709 - 0 1709 30906 84 1 0 343 2 1 49 3 8 106 3 1 5 1 0 258 0 118 152 13 14 193 5 6 64 71 101 98 29 1 107 chain 88586 chr1 249250621 + 158355161 158356208 L1PA4 6152 - 9 1066 40064 93 9 0 39 0 1 446 0 11 27 0 1 219 0 6 214 chain 169977 chr1 249250621 + 158356208 158358151 L1PA4 6152 + 3803 5751 22052 178 0 1 66 0 1 7 2 0 180 0 1 687 0 1 14 9 1 614 0 11 186 chain 22239 chr1 249250621 + 158358153 158358408 L1PA4 6152 + 5752 6006 119171 250 1 0 4 chain 11565 chr1 249250621 + 158358409 158358541 L1PA4 6152 + 6009 6141 154044 132 chain 31326 chr1 249250621 + 158378924 158379292 L1PA7 6471 - 1 368 81945 4 1 0 363 chain 518576 chr1 249250621 + 158396810 158403295 L1PA7 6471 - 2 6471 5322 159 1 2 161 8 9 517 1 0 266 0 1 142 0 1 603 0 2 89 3 9 139 0 1 428 0 1 13 2 0 216 2 1 85 1 0 4 0 1 12 0 1 278 0 1 8 6 5 193 0 1 472 7 9 151 7 6 69 35 17 696 7 3 138 1 0 4 4 5 481 5 9 253 0 1 402 24 8 7 0 4 385 chain 31393 chr1 249250621 + 158437695 158438052 L1PA4 6152 - 928 1286 81827 124 0 1 233 chain 13001 chr1 249250621 + 158438060 158438201 L1PA4 6152 + 5252 5393 148245 141 chain 37991 chr1 249250621 + 158438201 158438622 L1PA4 6152 + 5396 5817 72145 421 chain 30421 chr1 249250621 + 158438622 158438954 L1PA4 6152 + 5818 6151 83650 190 0 1 142 chain 123034 chr1 249250621 + 158482480 158483848 L1PA4 6152 + 4784 6152 30033 1368 chain 18461 chr1 249250621 + 158492310 158492591 L1PA8 5853 + 5582 5853 131609 25 3 1 71 11 9 17 4 0 35 2 1 19 1 0 93 chain 16059 chr1 249250621 + 158515095 158515277 L1PA4 6152 + 5968 6151 138178 23 0 1 159 chain 28755 chr1 249250621 + 158528289 158528592 AluYg6 310 - 7 310 90092 303 chain 5488 chr1 249250621 + 158528592 158528655 HSMAR1 1287 - 952 1015 190146 63 chain 87864 chr1 249250621 + 158536612 158537593 L1PA3long 6157 + 5175 6156 40424 827 0 1 149 1 0 4 chain 12854 chr1 249250621 + 158558619 158558997 L1PA15 4387 + 3992 4357 148822 99 14 13 13 13 17 15 133 124 43 2 0 13 5 0 28 chain 37331 chr1 249250621 + 158572445 158572979 MLT2A2 560 - 7 559 73050 140 2 13 181 45 50 151 0 2 15 chain 25899 chr1 249250621 + 158593203 158593579 THE1C 375 + 0 375 100444 13 5 0 190 13 16 69 7 9 53 1 0 25 chain 24521 chr1 249250621 + 158603186 158603479 AluY 311 + 18 311 107432 293 chain 165572 chr1 249250621 + 158610256 158612109 L1PA4 6152 + 4286 6151 22579 255 0 11 1260 0 1 338 chain 30063 chr1 249250621 + 158629385 158629699 AluYb8 318 - 4 318 84623 314 chain 10451 chr1 249250621 + 158633511 158633653 L1PA8 5853 + 5713 5853 158483 27 2 1 19 2 1 92 chain 45029 chr1 249250621 + 158633869 158634455 L1PA8 5853 + 5245 5853 63021 319 1 0 29 1 2 5 1 0 8 2 0 74 1 0 7 0 30 5 2 0 16 2 1 19 2 1 92 chain 39484 chr1 249250621 + 158657770 158658239 L1PA7 6471 - 431 899 70040 413 4 0 10 0 3 42 chain 30195 chr1 249250621 + 158658243 158658626 L1PA7 6471 + 6047 6429 84205 260 16 15 107 chain 30027 chr1 249250621 + 158661048 158661465 L1PA8 5853 + 5441 5853 84724 121 1 0 20 7 9 17 2 0 70 2 1 9 2 1 51 2 1 19 1 0 93 chain 9547 chr1 249250621 + 158665590 158665705 L1PBa1 4058 - 3220 3335 162850 115 chain 4249 chr1 249250621 + 158670698 158670813 MER5A 189 - 22 134 203884 45 50 47 20 chain 26952 chr1 249250621 + 158677852 158678161 L1PA4 6152 - 1 313 96442 146 1 3 123 0 1 39 chain 43068 chr1 249250621 + 158678200 158678671 L1PA3long 6157 - 820 1291 65340 471 chain 74526 chr1 249250621 + 158678672 158679495 L1PA3long 6157 + 5332 6156 46252 71 0 1 752 chain 3005 chr1 249250621 + 158698494 158698606 MIR 256 + 112 225 224940 25 63 64 24 chain 31888 chr1 249250621 + 158708140 158708595 LTR19A 502 + 1 493 81030 183 1 38 82 1 0 40 9 10 78 0 5 6 28 23 27 chain 5205 chr1 249250621 + 158711110 158711186 L1PA16 3655 - 73 146 192983 5 3 0 68 chain 32767 chr1 249250621 + 158713915 158714359 MLT2A1 477 - 0 477 79582 6 0 4 43 13 45 209 4 1 169 chain 44646 chr1 249250621 + 158730964 158731456 L1PA4 6152 - 181 673 62935 492 chain 193984 chr1 249250621 + 158731456 158733584 L1PA2 6032 - 3 2130 19675 17 1 0 2110 chain 14300 chr1 249250621 + 158733585 158733750 L1PA4 6152 + 5959 6124 143562 165 chain 7638 chr1 249250621 + 158743485 158743687 MER67A 545 + 81 515 173308 46 22 29 42 57 281 17 0 1 18 chain 9989 chr1 249250621 + 158750338 158750462 MER47A 366 - 97 221 160636 124 chain 3207 chr1 249250621 + 158760716 158760761 L1P4 1494 - 1353 1397 220766 16 2 1 27 chain 37568 chr1 249250621 + 158789656 158790131 MER9a3 513 - 1 498 72724 78 0 1 96 5 26 53 1 0 80 0 1 162 chain 24468 chr1 249250621 + 158793874 158794225 THE1B 368 + 0 368 107716 40 0 15 20 9 13 84 1 0 130 11 10 56 chain 23490 chr1 249250621 + 158795241 158795668 L1PA15 4387 + 3845 4258 113174 48 2 0 20 3 0 19 1 0 151 31 30 18 1 0 50 6 5 12 9 7 11 2 1 15 7 4 4 0 1 17 chain 26295 chr1 249250621 + 158799521 158799898 THE1B 368 - 2 368 98849 178 30 16 130 0 5 22 2 0 15 chain 19025 chr1 249250621 + 158804021 158804227 AluYg6 310 - 11 217 130050 206 chain 486177 chr1 249250621 + 158834181 158840604 L1PA6 6164 + 56 6161 7514 30 0 8 90 8 12 4 1 0 46 19 19 80 7 7 97 8 0 118 4 3 44 0 1 172 0 17 59 4 0 223 0 3 167 0 5 589 416 6 134 0 12 50 15 16 265 0 1 682 0 4 163 7 8 109 1 0 384 7 5 5 1 0 304 0 1 1264 0 56 671 15 14 150 3 0 7 chain 35552 chr1 249250621 + 158835954 158836360 L1PA4 6152 + 5741 6152 75473 400 0 5 6 chain 16049 chr1 249250621 + 158842174 158842378 L1PA5 6144 + 5929 6132 138216 52 9 8 143 chain 545031 chr1 249250621 + 158855893 158861904 L1PA2 6032 + 0 6016 2068 573 0 4 164 0 1 473 1 0 4223 0 1 441 10 10 126 chain 37051 chr1 249250621 + 158870088 158870555 MER9a2 513 - 0 498 73454 14 0 1 224 0 1 4 2 0 5 0 1 54 0 6 138 6 29 12 0 1 8 chain 3288 chr1 249250621 + 158889545 158889582 THE1C-int 1605 + 118 155 219245 37 chain 27159 chr1 249250621 + 158905857 158906155 L1PA4 6152 - 6 304 95725 298 chain 36978 chr1 249250621 + 158906155 158906578 L1P1 4361 + 3644 4074 73539 39 1 0 38 0 8 345 chain 39083 chr1 249250621 + 158919179 158919613 L1PA3long 6157 - 5 439 70629 434 chain 145539 chr1 249250621 + 158919613 158921444 HERVK22-int 3844 - 659 2501 25249 7 1 0 33 5 4 17 1 0 6 1 0 70 1 0 252 1 0 706 0 14 512 0 4 195 1 0 22 chain 552214 chr1 249250621 + 158922530 158928559 L1PA2 6032 + 0 6032 1168 210 0 1 161 0 1 89 1 2 5568 chain 3971 chr1 249250621 + 158960925 158960973 L1MA8 2339 - 282 330 207813 48 chain 49841 chr1 249250621 + 158975919 158976529 LTR6A 649 - 0 649 59127 20 0 1 6 2 0 171 1 41 410 chain 42671 chr1 249250621 + 158990907 158991722 L1PB1 5432 - 10 786 65813 18 14 12 22 6 5 16 54 36 11 1 0 6 2 0 16 1 0 44 1 0 15 2 1 52 2 0 5 9 5 14 3 2 8 1 0 11 3 0 8 18 17 91 6 5 69 7 6 84 0 1 13 23 24 159 chain 48113 chr1 249250621 + 158992086 158992661 LTR10C 591 - 4 581 60393 242 0 1 205 0 1 128 chain 25869 chr1 249250621 + 158996088 158996388 AluSq10 312 - 13 312 100575 46 1 0 253 chain 188575 chr1 249250621 + 158996704 158999468 L1PBa 3878 - 85 2885 20186 16 2 0 5 1 0 11 19 13 11 2 0 19 2 1 24 0 4 12 0 1 226 14 12 124 0 3 83 13 6 169 15 14 93 0 21 82 15 15 113 18 15 198 0 1 122 12 15 61 4 1 8 0 1 148 10 7 141 0 16 92 0 33 47 18 0 186 2 1 6 1 0 45 9 4 119 6 10 20 2 3 9 1 2 106 0 2 24 3 4 75 17 17 183 chain 61967 chr1 249250621 + 159027055 159027860 MER61-int 3695 - 1051 1842 51914 20 0 1 7 8 6 121 1 0 122 1 0 227 1 2 10 14 0 124 0 2 149 chain 205065 chr1 249250621 + 159077360 159080085 L1PB1 5432 + 2474 5194 18851 25 8 9 78 0 4 18 10 6 6 0 5 401 1 0 17 0 1 106 8 0 32 0 18 6 1 0 75 1 3 250 14 15 172 0 1 191 0 1 132 2 1 50 17 2 286 1 0 163 1 0 81 0 2 286 1 0 161 7 9 15 14 12 20 1 0 13 1 0 11 15 9 27 chain 189616 chr1 249250621 + 159084497 159086629 L1PA4 6152 + 4013 6152 20091 967 1 3 1013 1 8 10 7 0 127 0 5 6 chain 200006 chr1 249250621 + 159118519 159120915 L1PA7 6471 - 2 2418 19211 8 3 0 669 0 9 153 6 9 656 0 1 48 0 1 4 1 0 329 0 4 4 1 0 427 10 17 77 chain 212445 chr1 249250621 + 159124045 159126537 L1PA6 6164 - 2 2505 18331 335 0 1 173 0 1 332 1 5 78 1 0 220 1 0 362 0 5 281 0 4 15 4 1 73 2 4 4 1 0 609 chain 125566 chr1 249250621 + 159204534 159205994 L1PA6 6164 - 8 1474 29222 133 2 1 5 1 0 621 0 2 73 0 6 625 chain 4567 chr1 249250621 + 159225100 159225152 L1P1 4361 + 3123 3175 200030 52 chain 42893 chr1 249250621 + 159228684 159229156 L1PA3long 6157 - 4 476 65548 472 chain 68787 chr1 249250621 + 159234704 159235468 L1PA4 6152 - 14 780 48905 319 1 2 110 0 1 334 chain 3925 chr1 249250621 + 159237056 159237098 MER4E1 777 + 663 705 208494 42 chain 432219 chr1 249250621 + 159239102 159244501 L1PA8 5853 + 449 5853 9258 96 0 1 31 4 0 48 13 9 511 1 0 442 0 3 126 0 1 21 0 2 185 0 10 91 1 0 248 0 4 417 0 7 257 0 5 432 13 0 190 0 1 54 7 8 656 10 9 267 0 1 94 0 1 241 0 1 5 1 0 85 2 0 392 0 1 162 1 0 44 6 4 66 10 8 54 2 1 22 1 0 90 chain 37381 chr1 249250621 + 159263185 159263596 L1PA3long 6157 - 0 411 72990 411 chain 46370 chr1 249250621 + 159263596 159264104 L1PA3long 6157 + 5235 5742 61710 72 1 0 435 chain 304197 chr1 249250621 + 159293440 159296943 L1P1 4361 + 825 4328 13232 144 1 2 269 15 14 1839 0 1 82 0 1 103 1 0 278 0 1 591 1 0 155 1 0 23 chain 119460 chr1 249250621 + 159298247 159299827 L1PA11 4918 + 2636 4499 31240 155 0 1 92 14 12 275 1 293 263 0 3 541 0 1 56 6 0 60 13 12 7 2 0 68 2 0 13 1 0 11 chain 60516 chr1 249250621 + 159301385 159302126 L1PA5 6144 - 2 727 52572 7 4 0 86 18 6 37 0 7 17 7 0 565 chain 231611 chr1 249250621 + 159316900 159319690 L1PA7 6471 + 3662 6470 17223 90 0 1 1065 0 1 200 0 2 466 7 6 121 0 4 69 11 13 87 0 6 153 0 1 128 0 1 351 0 1 42 chain 35016 chr1 249250621 + 159342512 159342932 L1PA5 6144 + 5723 6143 76168 109 1 0 156 1 0 142 1 3 10 chain 12967 chr1 249250621 + 159345469 159345801 L1PB1 5432 - 14 318 148363 4 0 1 22 8 7 14 6 5 19 2 0 14 1 0 4 8 6 14 23 12 15 1 0 44 1 0 16 2 1 52 33 26 4 1 0 24 chain 99263 chr1 249250621 + 159359441 159360542 L1PA4 6152 - 840 1941 36960 1101 chain 72838 chr1 249250621 + 159360557 159361369 L1PA4 6152 + 5330 6143 47105 487 1 2 324 chain 202997 chr1 249250621 + 159369998 159373172 L1MA1 4479 + 1032 4126 18995 110 0 1 13 0 2 13 0 2 186 24 0 13 41 21 294 0 1 55 5 7 69 0 13 10 1 2 96 9 5 22 0 1 70 1 4 29 15 16 19 4 5 55 4 0 247 0 1 15 4 5 42 1 4 29 1 2 4 1 0 21 0 1 65 1 0 65 6 5 101 19 18 13 1 0 15 2 1 121 14 0 17 1 0 24 2 0 176 3 1 16 4 0 69 31 23 30 19 14 79 3 0 20 1 2 106 2 0 196 1 0 26 2 0 7 17 15 11 0 2 44 7 6 21 7 5 8 1 0 87 13 6 126 1 0 7 26 24 17 chain 38752 chr1 249250621 + 159377977 159378415 L1PA3long 6157 + 5719 6157 71075 277 0 1 4 1 0 156 chain 187289 chr1 249250621 + 159379524 159381597 L1PA3long 6157 - 2037 4111 20311 1429 0 1 644 chain 184041 chr1 249250621 + 159381597 159383639 L1PA3long 6157 + 4115 6157 20578 550 0 1 713 1 0 778 chain 4319 chr1 249250621 + 159383681 159383734 MER6A 605 + 361 415 202979 49 0 1 4 chain 18870 chr1 249250621 + 159389032 159389328 THE1B 368 + 0 306 130457 169 1 0 23 46 57 57 chain 20280 chr1 249250621 + 159414748 159414973 L1PA3long 6157 + 5931 6156 126278 225 chain 114399 chr1 249250621 + 159418945 159420250 SVA_C 1631 + 0 1476 32970 215 1 0 93 7 0 219 0 1 189 0 40 94 0 138 487 chain 538651 chr1 249250621 + 159422749 159428753 L1PA3long 6157 + 4 6147 3046 148 0 1 102 0 1 485 4 6 20 11 139 761 0 3 1596 0 4 2877 chain 44164 chr1 249250621 + 159434838 159435511 MER51A 677 + 0 661 63994 132 0 9 11 1 2 16 7 9 14 21 1 127 1 11 188 19 20 43 16 0 33 0 1 44 chain 23266 chr1 249250621 + 159440281 159440561 AluSg 306 + 26 306 114356 280 chain 124394 chr1 249250621 + 159463441 159464964 LTR12C 1709 - 0 1709 29576 169 1 0 49 27 7 202 2 1 53 0 4 40 1 207 140 1 0 642 0 3 148 4 0 44 chain 20324 chr1 249250621 + 159465398 159465622 L1PA4 6152 - 1 225 126166 224 chain 23350 chr1 249250621 + 159468597 159468958 THE1B 368 + 0 368 113921 44 0 15 48 29 25 33 8 7 28 2 0 132 1 0 36 chain 6541 chr1 249250621 + 159474308 159474387 L1PA6 6164 - 3 83 180912 17 0 1 62 chain 141720 chr1 249250621 + 159494845 159496424 L1PA3long 6157 - 2 1586 25866 136 0 5 1443 chain 58984 chr1 249250621 + 159496424 159497057 L1PA3long 6157 + 3949 4582 53196 633 chain 2923 chr1 249250621 + 159499691 159499727 L1MEf 1413 - 867 903 226637 36 chain 15892 chr1 249250621 + 159502584 159502754 L1HS 6032 + 5861 6031 138680 170 chain 519075 chr1 249250621 + 159508009 159514030 L1PA4 6152 + 6 6143 5255 629 2 0 408 0 2 195 1 3 1119 0 5 21 0 98 410 16 16 42 0 1 985 0 1 22 0 4 698 1 0 6 0 5 59 0 1 1407 chain 42953 chr1 249250621 + 159518496 159519031 L1PA10 4194 + 3567 4103 65472 21 2 1 25 0 1 72 3 4 412 chain 39893 chr1 249250621 + 159525288 159526104 L1PA7 6471 + 5970 6464 69465 41 1 0 82 326 5 366 chain 29238 chr1 249250621 + 159525417 159525729 AluYa5 310 + 0 310 87860 132 2 0 178 chain 555547 chr1 249250621 + 159538743 159544891 L1PA3long 6157 - 0 6151 768 171 0 1 684 0 1 4591 1 2 701 chain 549869 chr1 249250621 + 159573552 159579692 L1PA3long 6157 + 10 6157 1463 278 0 6 874 0 1 495 0 1 537 5 7 116 0 1 2105 4 0 1726 chain 509273 chr1 249250621 + 159585869 159592361 L1PA7 6471 + 3 6470 6221 399 2 3 11 1 0 5 0 1 246 46 49 778 0 3 1134 17 0 352 9 7 228 0 1 5 6 21 238 3 2 62 3 7 57 2 1 864 2 1 46 0 7 357 13 17 684 52 0 31 3 2 326 2 1 45 5 16 127 18 20 56 1 0 4 0 1 252 chain 123127 chr1 249250621 + 159593229 159594652 L1PA4 6152 + 4721 6143 29999 1255 5 4 163 chain 3821 chr1 249250621 + 159604129 159604173 MER65A 464 + 332 376 210080 44 chain 3312 chr1 249250621 + 159630662 159630701 L1MA4 2864 - 2390 2429 218735 39 chain 59021 chr1 249250621 + 159636820 159637861 MER4E 760 - 26 760 53379 183 319 0 22 6 13 135 0 4 359 0 1 17 chain 9053 chr1 249250621 + 159641267 159641375 MER4E 760 - 7 114 165299 83 1 0 24 chain 8644 chr1 249250621 + 159650802 159650901 L1PA5 6144 + 6045 6144 167507 99 chain 19963 chr1 249250621 + 159654796 159655010 L1PA2 6032 - 2 216 127262 214 chain 3549 chr1 249250621 + 159668633 159668678 L1MC4 1079 - 347 392 214550 45 chain 23527 chr1 249250621 + 159678924 159679225 AluYk4 311 + 0 296 112977 126 2 0 40 10 9 106 2 0 15 chain 23817 chr1 249250621 + 159684854 159685114 L1PA3long 6157 - 0 260 111385 260 chain 87599 chr1 249250621 + 159692669 159693721 MER11B 1079 - 0 1070 40535 11 1 0 295 5 7 432 1 18 307 chain 501118 chr1 249250621 + 159700247 159706359 L1PA3long 6157 + 8 6157 6782 107 10 24 192 6 0 247 0 1 17 0 1 110 10 17 33 24 22 279 12 13 5 1 0 17 20 23 66 9 0 746 1 0 107 2 1 411 0 1 271 2 1 572 1 0 207 7 8 114 3 30 2491 0 3 12 chain 3007 chr1 249250621 + 159709257 159709294 LTR38B 592 + 9 45 224908 29 1 0 7 chain 146650 chr1 249250621 + 159711208 159713017 L1PA8 5853 - 0 1810 25063 93 1 0 19 2 1 52 1 0 9 2 1 44 0 12 14 2 0 43 2 1 555 2 0 319 0 1 6 8 0 8 6 13 149 2 1 178 1 0 291 chain 170811 chr1 249250621 + 159729413 159731266 L1PA2 6032 - 1422 3275 21960 1853 chain 129796 chr1 249250621 + 159731266 159732682 L1PA2 6032 + 4618 6032 28111 1401 2 0 13 chain 75728 chr1 249250621 + 159737585 159738553 LTR5_Hs 974 + 0 974 45633 288 0 1 180 0 1 186 1 0 163 8 15 19 20 18 103 chain 59511 chr1 249250621 + 159757332 159758414 MER4E1 777 - 8 777 53100 16 0 2 143 3 0 58 12 11 106 310 0 126 0 1 113 1 0 176 1 0 17 chain 6451 chr1 249250621 + 159811137 159811219 MER115 684 + 510 592 181632 82 chain 6238 chr1 249250621 + 159843198 159843276 MER45A 178 + 48 126 183267 78 chain 18481 chr1 249250621 + 159875359 159875679 Tigger1 2417 - 1938 2326 131554 16 5 6 70 8 74 15 46 47 160 chain 3907 chr1 249250621 + 159908502 159908552 MIR 256 + 84 134 208745 50 chain 31191 chr1 249250621 + 159929816 159930156 L1PA4 6152 - 10 350 82173 340 chain 4217 chr1 249250621 + 159964549 159964595 MLT2A2 560 - 0 46 204335 46 chain 25232 chr1 249250621 + 159967070 159967367 AluYf5 307 - 12 307 103578 27 10 8 260 chain 15992 chr1 249250621 + 160042762 160042991 MER30 238 - 0 237 138374 39 3 0 61 2 26 13 13 0 98 chain 23905 chr1 249250621 + 160081472 160081746 AluSc5 308 - 24 298 110883 274 chain 2856 chr1 249250621 + 160082446 160082476 U2 167 - 137 167 227726 30 chain 3156 chr1 249250621 + 160120719 160120765 LTR46 455 + 0 40 221805 12 6 0 28 chain 5082 chr1 249250621 + 160257898 160257956 AluSq10 312 - 15 73 194276 58 chain 9155 chr1 249250621 + 160295895 160296004 HY1 111 - 0 109 164786 109 chain 18855 chr1 249250621 + 160339728 160340043 L1MB2 1706 - 789 1101 130503 26 6 0 6 2 0 96 1 0 16 41 48 11 1 0 109 chain 508878 chr1 249250621 + 160354465 160360822 L1PA6 6164 - 4 6164 6253 12 0 9 4 21 0 122 16 38 192 2 7 273 0 41 89 0 3 73 6 11 62 3 9 847 1 0 186 0 1 657 0 2 332 0 1 719 0 1 43 1 2 444 0 14 31 306 0 147 0 1 71 1 0 212 0 1 679 0 17 521 0 1 102 0 1 182 chain 24942 chr1 249250621 + 160403914 160404255 THE1C-int 1605 - 1249 1605 105100 23 3 9 190 1 11 108 2 1 14 chain 32593 chr1 249250621 + 160404749 160405206 MER4A1 472 - 14 472 79862 78 11 14 101 1 0 20 25 24 221 chain 43675 chr1 249250621 + 160413580 160414221 L1PB3 3668 - 515 1184 64595 49 24 22 66 0 1 12 3 0 16 2 0 7 0 1 11 4 0 51 6 13 68 0 6 92 0 25 47 1 0 182 chain 3750 chr1 249250621 + 160414313 160414359 MER99 766 - 504 550 211135 46 chain 18047 chr1 249250621 + 160434949 160436797 L1MA5A 2387 - 545 1748 132741 88 8 11 104 1547 906 72 8 1 21 chain 3915 chr1 249250621 + 160438895 160438975 MADE1 96 + 0 95 208620 15 17 33 13 1 0 34 chain 538544 chr1 249250621 + 160445096 160451239 L1PA3long 6157 - 0 6156 3062 1947 0 2 158 2 1 697 0 1 1070 0 1 418 1 2 42 0 1 565 0 1 514 1 0 20 0 7 131 0 1 577 chain 21191 chr1 249250621 + 160463473 160463831 THE1D 372 - 0 368 123239 32 1 0 116 13 14 16 50 60 130 chain 149692 chr1 249250621 + 160477721 160479450 L1PA6 6164 + 4426 6161 24663 889 4 8 29 0 2 807 chain 292703 chr1 249250621 + 160482301 160486372 L1PA10 4194 + 145 4161 13844 8 1 0 4 1 0 8 17 10 12 2 0 12 3 0 7 3 1 9 12 8 8 2 0 9 11 9 21 2 0 15 1 0 8 100 70 6 1 0 10 1 0 15 7 0 8 1 0 80 2 1 68 0 1 421 15 16 37 0 1 53 0 1 312 1 0 81 0 1 14 5 0 350 0 8 63 4 8 77 1 2 418 0 1 17 1 0 228 1 2 17 7 3 64 1 0 198 8 12 177 0 1 21 0 1 180 0 1 156 0 1 262 8 10 122 1 0 226 3 0 34 1 0 11 chain 490152 chr1 249250621 + 160493453 160500000 L1PA7 6471 - 6 6258 7359 6 3 0 610 1 0 4 0 1 140 0 1 45 0 2 401 1 0 647 0 2 205 4 9 282 312 0 417 0 2 109 0 2 7 0 3 15 0 4 29 0 1 23 0 1 118 9 10 44 1 3 127 0 1 404 4 5 153 0 1 804 6 7 469 0 1 6 7 6 19 0 1 169 0 2 5 3 4 170 227 227 272 1 0 57 12 0 199 chain 137498 chr1 249250621 + 160501234 160503102 SVA_A 1864 + 39 1864 26560 612 43 0 31 8 81 35 3 0 71 46 9 8 1 0 60 8 43 35 2 0 49 0 3 69 1 0 36 39 0 98 3 0 36 40 12 52 0 3 482 chain 2058 chr1 249250621 + 160501846 160501889 SVA_A 1864 + 875 911 172006 1 3 0 10 1 0 19 8 5 1 chain 2368 chr1 249250621 + 160502352 160502391 SVA_A 1864 + 1071 1144 76322 19 11 9 8 0 36 1 chain 333301 chr1 249250621 + 160528255 160532874 L1PA11 4918 + 7 4504 12076 37 3 1 30 7 4 36 1 0 15 2 0 50 1 0 33 2 0 3 1 0 135 12 20 387 0 1 445 1 0 4 1 0 6 1 0 18 7 11 205 31 17 201 13 14 47 9 10 73 6 0 142 0 3 47 8 7 532 30 8 117 0 2 254 0 1 22 1 2 105 0 1 266 6 6 87 64 0 275 2 4 219 0 4 23 0 1 110 9 9 260 8 7 10 22 0 59 2 1 12 3 1 66 6 4 12 1 0 7 1 0 8 chain 4174 chr1 249250621 + 160544458 160544556 MIR 256 + 37 136 204921 26 34 35 38 chain 272912 chr1 249250621 + 160552162 160564480 L1PA7 6471 - 2 3578 15021 154 4 3 253 0 7 31 22 11 249 0 2 137 3 2 111 6 0 726 0 10 102 0 1 306 3 1 193 8755 0 76 0 1 984 5 9 147 8 17 43 chain 179378 chr1 249250621 + 160564480 160566789 L1PA7 6471 + 4283 6461 21037 22 0 2 568 10 11 62 0 1 478 0 1 193 1 0 46 136 0 434 15 16 344 chain 9331 chr1 249250621 + 160565860 160565994 L1P1 4361 - 1599 1733 162197 63 5 0 6 5 10 55 chain 86989 chr1 249250621 + 160569761 160570797 MER11B 1079 + 6 1064 40788 310 1 18 76 0 2 354 1 3 142 6 7 146 chain 55277 chr1 249250621 + 160571629 160572386 L1PBa 3878 - 136 888 55538 5 2 0 21 2 1 113 5 1 73 0 5 303 3 0 115 0 3 48 1 4 6 3 0 9 17 14 31 chain 4700 chr1 249250621 + 160588450 160588524 MER3 215 + 123 203 198532 45 5 11 24 chain 82167 chr1 249250621 + 160621928 160622885 LTR5_Hs 974 + 0 961 42696 117 0 1 341 0 4 448 1 0 50 chain 76493 chr1 249250621 + 160656363 160657415 MER11C 1089 - 20 1089 45213 4 0 1 141 4 3 56 0 1 125 0 1 38 1 0 4 1 5 112 47 46 204 9 13 55 4 13 247 chain 82753 chr1 249250621 + 160658403 160659721 HERVK11-int 2540 - 307 1555 42436 120 9 11 72 13 12 183 1 0 105 25 20 421 21 1 34 38 26 12 18 8 11 39 35 29 1 0 68 2 0 23 57 41 16 chain 522357 chr1 249250621 + 160661543 160668037 HERVK-int 6823 + 0 6567 4921 5 1 0 11 1 0 6 1 0 20 1 0 20 1 0 38 1 0 21 15 12 11 6 0 274 0 3 34 1 0 205 2 0 26 1 0 20 2 1 161 0 2 148 1 0 441 1 0 368 7 2 6 1 0 49 64 0 2914 0 1 78 0 1 394 0 3 218 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 61 8 0 8 0 6 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 2 1 4 1 0 26 1 0 4 1 0 11 36 27 17 1 0 4 chain 7202 chr1 249250621 + 160672905 160673169 HERVK11-int 2540 - 1650 1854 176058 12 3 0 44 136 85 12 5 0 42 1 0 9 chain 62210 chr1 249250621 + 160701205 160701944 L1PA7 6471 - 4 735 51797 6 5 0 10 1 0 373 1 0 67 1 0 275 chain 2544 chr1 249250621 + 160715952 160715990 ORSL 269 + 76 116 232552 26 1 3 11 chain 369233 chr1 249250621 + 160752877 160757197 L1P1 4361 + 1 4341 11116 573 1 0 128 12 5 471 0 3 235 6 33 1715 0 1 985 1 0 155 2 1 22 2 1 12 chain 57231 chr1 249250621 + 160758175 160758815 L1PA3long 6157 + 5334 6147 54382 17 0 173 623 chain 11500 chr1 249250621 + 160796205 160796343 MER85 139 + 1 139 154301 138 chain 10606 chr1 249250621 + 160809319 160809559 MER2 342 + 110 336 157799 90 14 10 13 2 0 21 64 56 36 chain 23893 chr1 249250621 + 160819088 160819409 L1PA8 5853 - 0 316 110941 93 1 0 19 2 1 26 0 1 23 4 3 8 1 0 56 0 1 12 2 0 46 1 0 27 chain 20208 chr1 249250621 + 160860559 160862331 L1PA15 4387 + 2464 3853 32497 557 7 6 123 400 20 5 3 0 338 0 1 11 13 2 7 0 8 22 0 1 117 10 3 57 0 11 62 13 11 27 chain 510691 chr1 249250621 + 160862344 160870061 L1PA5 6144 + 3 6144 6097 117 0 14 19 3 15 549 7 6 448 15 6 130 4 103 1021 0 2 3 1693 0 456 6 5 1112 0 1 335 2 0 28 0 1 918 3 0 5 8 12 835 chain 5987 chr1 249250621 + 160870196 160870721 L1PA15 4387 + 3861 4365 32497 30 3 1 40 1 0 172 2 1 25 1 0 19 43 44 14 4 0 10 1 0 50 6 3 44 23 15 27 1 0 9 chain 29031 chr1 249250621 + 160875900 160876285 LTR7B 505 - 0 505 88845 40 1 2 110 1 42 54 18 86 51 4 14 106 chain 49226 chr1 249250621 + 160879690 160880324 LTR12_ 688 - 0 688 59569 234 5 7 149 0 3 104 0 49 142 chain 75853 chr1 249250621 + 160882931 160883908 LTR5_Hs 974 + 0 970 45570 285 0 1 16 22 8 291 0 1 99 1 2 113 11 18 8 1 0 28 1 0 4 1 0 96 chain 173102 chr1 249250621 + 160884304 160887571 MER57-int 2662 - 3 2618 21699 36 3 0 31 5 0 9 1 0 24 4 1 10 1 0 4 3 1 18 52 21 15 1 0 53 18 12 105 0 5 32 4 12 23 9 10 32 321 0 194 0 2 17 10 7 68 40 35 40 17 0 27 0 1 113 1 0 235 318 25 37 2 0 15 0 5 28 13 12 80 5 11 160 0 8 17 0 14 165 7 8 4 0 1 60 2 0 128 0 2 373 2 0 71 0 4 24 0 8 86 68 50 26 chain 13420 chr1 249250621 + 160887754 160887933 THE1B 368 - 12 186 146632 65 3 0 99 2 0 10 chain 35743 chr1 249250621 + 160889003 160889480 L1PA8 5853 - 0 471 75207 93 1 0 18 3 2 50 13 12 70 2 0 44 1 0 182 chain 118417 chr1 249250621 + 160890708 160892562 THE1B-int 1605 + 27 1605 31640 157 23 19 71 0 1 155 0 25 64 310 0 111 7 8 47 0 1 83 0 1 181 1 0 4 0 1 28 0 8 292 4 5 316 chain 24648 chr1 249250621 + 160893768 160894115 THE1B 368 + 0 356 106730 40 0 15 122 15 14 6 6 0 97 1 2 60 chain 121215 chr1 249250621 + 160902452 160903956 SVA_B 1603 + 7 1601 30631 15 12 22 27 1 6 442 0 40 54 0 37 158 9 48 50 41 0 103 1 0 135 1 2 455 chain 65642 chr1 249250621 + 160905975 160906742 SVA_C 1631 - 0 757 50277 10 4 0 591 8 4 8 1 0 16 1 0 128 chain 416456 chr1 249250621 + 160906749 160911824 L1P2 5180 - 157 5178 9627 92 27 6 289 0 1 250 1 2 25 2 0 413 0 1 326 1 0 5 5 7 615 1 0 80 6 11 578 0 11 172 23 0 462 18 9 322 25 13 157 1 2 325 0 1 35 17 0 11 0 15 272 1 0 8 1 0 88 1 0 172 1 0 53 2 1 43 1 0 148 chain 3626 chr1 249250621 + 160914615 160914655 U6 107 - 51 91 213213 40 chain 78641 chr1 249250621 + 160918614 160919581 LTR5_Hs 974 - 0 974 44210 191 7 7 82 0 2 21 1 2 207 0 4 458 chain 3628 chr1 249250621 + 160922042 160922099 LTR40b 463 + 301 359 213196 43 3 4 11 chain 23081 chr1 249250621 + 160937973 160938268 AluSz6 309 + 9 307 115238 111 0 1 156 2 4 26 chain 24853 chr1 249250621 + 160945777 160946068 AluSp 311 - 20 311 105608 291 chain 31068 chr1 249250621 + 160952183 160952642 LTR2 463 - 0 463 82401 65 35 36 133 20 20 95 6 7 52 0 2 53 chain 24082 chr1 249250621 + 160961173 160961449 AluY 311 + 21 298 109855 111 0 1 165 chain 25392 chr1 249250621 + 160972905 160973196 AluSp 311 - 7 295 102729 5 3 0 283 chain 74329 chr1 249250621 + 160986624 160987594 LTR5_Hs 974 + 0 974 46346 169 1 0 115 0 1 182 0 1 73 5 2 113 1 0 163 8 15 19 20 18 48 0 2 53 chain 25340 chr1 249250621 + 160993151 160993438 AluSp 311 - 23 311 103017 149 1 2 137 chain 6205 chr1 249250621 + 160998354 160998422 MER30B 195 - 14 82 183550 68 chain 128750 chr1 249250621 + 160998777 161000243 SVA_B 1603 + 41 1593 28377 129 0 2 580 0 4 68 0 82 70 1 0 14 1 0 357 3 3 243 chain 24977 chr1 249250621 + 161032611 161032902 AluSp 311 - 19 311 104920 206 0 1 85 chain 72923 chr1 249250621 + 161033045 161034089 MER11C 1089 + 0 1059 47056 247 7 16 50 0 4 68 1 0 172 50 47 86 1 5 42 0 1 95 41 42 45 1 0 117 0 1 21 chain 3066 chr1 249250621 + 161084816 161084849 MER44D 709 + 75 108 223659 33 chain 23672 chr1 249250621 + 161114616 161114905 AluSp 311 + 10 290 112189 17 10 0 15 0 1 247 chain 12448 chr1 249250621 + 161116052 161116191 L1PA3long 6157 - 15 154 150468 139 chain 11895 chr1 249250621 + 161118067 161118203 AluYf4 310 - 18 153 152625 28 2 0 89 0 1 17 chain 12992 chr1 249250621 + 161123284 161123431 L1PA6 6164 + 6012 6159 148271 147 chain 14541 chr1 249250621 + 161154839 161154994 L1PA3long 6157 + 6002 6157 142756 155 chain 24376 chr1 249250621 + 161184521 161184819 AluSp 311 + 1 305 108213 184 0 5 75 8 9 31 chain 30154 chr1 249250621 + 161213886 161214201 AluYb8 318 + 0 315 84318 315 chain 390275 chr1 249250621 + 161220441 161225586 HERV9-int 5642 + 15 4825 10447 552 1 5 24 25 24 89 13 7 78 1 0 53 5 3 253 80 0 141 1 0 309 0 4 36 11 10 30 1 0 44 315 0 38 6 0 38 2 1 107 23 60 143 0 1 311 0 4 261 0 12 543 0 25 1092 0 2 6 2 0 51 19 0 343 0 1 90 0 11 8 chain 136078 chr1 249250621 + 161250636 161252231 SVA_D 2077 - 4 2076 26818 588 0 1 31 5 361 7 0 51 36 0 1 4 0 1 40 0 1 4 9 0 30 2 1 115 0 3 34 3 0 36 0 3 126 0 77 507 4 0 14 chain 3776 chr1 249250621 + 161259523 161259609 MER21C 908 - 836 907 210724 21 0 1 8 26 10 31 chain 5984 chr1 249250621 + 161261031 161261206 MIR 256 - 46 231 185389 10 1 0 24 22 25 44 55 63 19 chain 23618 chr1 249250621 + 161268353 161268633 AluSc 308 + 0 278 112484 131 2 0 147 chain 6882 chr1 249250621 + 161271233 161271336 L1PB1 5432 - 5 101 178334 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 chain 72777 chr1 249250621 + 161285497 161286394 LTR5_Hs 974 - 0 974 47133 82 0 2 20 2 0 36 6 12 96 0 19 21 0 4 270 0 4 294 0 41 19 1 4 50 chain 29737 chr1 249250621 + 161297018 161297770 MER41D 557 - 178 557 85706 216 0 3 98 376 0 62 chain 5364 chr1 249250621 + 161303491 161303554 L1MB8 1703 - 479 542 191375 63 chain 3794 chr1 249250621 + 161336988 161337037 MER33 330 + 243 292 210473 49 chain 16983 chr1 249250621 + 161356379 161356653 MER57F 435 + 0 281 135639 83 0 4 89 17 24 23 15 12 34 1 0 12 chain 22518 chr1 249250621 + 161358994 161359285 AluSp 311 + 8 292 117947 16 0 1 86 2 1 157 8 1 22 chain 33953 chr1 249250621 + 161366906 161367365 LTR2 463 + 0 463 77689 107 9 10 263 2 3 28 5 8 20 1 0 24 chain 6881 chr1 249250621 + 161369489 161369562 tRNA-Val-GTG 73 - 0 73 178352 73 chain 4741 chr1 249250621 + 161380778 161380846 LTR5B 1012 - 937 1004 198004 22 4 3 42 chain 6784 chr1 249250621 + 161391882 161391952 tRNA-Glu-GAA 70 - 0 70 179079 70 chain 172033 chr1 249250621 + 161392054 161394103 SVA_D 2077 + 19 2076 21812 40 0 2 43 0 27 376 76 0 218 0 3 33 3 0 135 47 52 89 0 1 48 1 0 265 0 50 675 chain 2806 chr1 249250621 + 161392990 161393025 SVA_D 2077 + 1267 1302 112311 35 chain 7139 chr1 249250621 + 161397866 161397940 tRNA-Asn-AAC 74 - 0 74 176482 74 chain 28385 chr1 249250621 + 161401321 161401720 MLT2A1 477 - 85 477 91644 7 11 0 59 11 10 143 1 5 22 3 4 142 chain 459607 chr1 249250621 + 161401720 161408359 HERVL-int 5654 - 0 5654 8415 168 0 1 49 0 1 203 9 7 38 0 1 4 1 0 370 0 1 892 0 4 204 2 0 24 1032 0 332 7 10 715 0 14 305 9 26 88 1 7 129 0 1 382 0 3 347 5 3 207 6 0 243 0 5 386 3 6 478 chain 86686 chr1 249250621 + 161403689 161404716 LTR5A 1029 + 0 1029 40884 147 1 0 358 12 14 246 0 2 16 1 0 246 chain 3638 chr1 249250621 + 161410647 161410686 tRNA-Asp-GAY 44 - 5 44 213014 39 chain 8030 chr1 249250621 + 161411322 161411405 tRNA-Leu-CTG 83 + 0 83 170880 83 chain 4938 chr1 249250621 + 161413093 161413152 tRNA-Gly-GGY 63 + 0 58 195823 54 1 0 4 chain 30515 chr1 249250621 + 161415391 161415804 MER11A 1151 + 1 502 83395 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 6975 chr1 249250621 + 161417017 161417089 tRNA-Glu-GAG_ 72 - 0 72 177652 72 chain 3638 chr1 249250621 + 161417408 161417446 tRNA-Gly-GGA 38 - 0 38 213024 38 chain 3638 chr1 249250621 + 161418065 161418104 tRNA-Asp-GAY 44 - 5 44 213013 39 chain 8030 chr1 249250621 + 161418740 161418823 tRNA-Leu-CTG 83 + 0 83 170879 83 chain 4938 chr1 249250621 + 161420466 161420525 tRNA-Gly-GGY 63 + 0 58 195822 54 1 0 4 chain 30515 chr1 249250621 + 161422771 161423184 MER11A 1151 + 1 502 83394 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 6975 chr1 249250621 + 161424397 161424469 tRNA-Glu-GAG_ 72 - 0 72 177651 72 chain 3638 chr1 249250621 + 161424789 161424827 tRNA-Gly-GGA 38 - 0 38 213023 38 chain 3638 chr1 249250621 + 161425446 161425485 tRNA-Asp-GAY 44 - 5 44 213012 39 chain 8030 chr1 249250621 + 161426121 161426204 tRNA-Leu-CTG 83 + 0 83 170878 83 chain 4938 chr1 249250621 + 161427897 161427956 tRNA-Gly-GGY 63 + 0 58 195821 54 1 0 4 chain 30515 chr1 249250621 + 161430182 161430595 MER11A 1151 + 1 502 83393 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 6975 chr1 249250621 + 161431808 161431880 tRNA-Glu-GAG_ 72 - 0 72 177650 72 chain 3638 chr1 249250621 + 161432199 161432237 tRNA-Gly-GGA 38 - 0 38 213022 38 chain 3638 chr1 249250621 + 161432856 161432895 tRNA-Asp-GAY 44 - 5 44 213011 39 chain 8030 chr1 249250621 + 161433531 161433614 tRNA-Leu-CTG 83 + 0 83 170877 83 chain 4938 chr1 249250621 + 161435257 161435316 tRNA-Gly-GGY 63 + 0 58 195820 54 1 0 4 chain 30515 chr1 249250621 + 161437562 161437975 MER11A 1151 + 1 502 83392 86 0 91 50 1 0 61 9 5 90 1 0 4 0 1 54 0 1 36 0 1 21 chain 6975 chr1 249250621 + 161439188 161439260 tRNA-Glu-GAG_ 72 - 0 72 177649 72 chain 3638 chr1 249250621 + 161439580 161439618 tRNA-Gly-GGA 38 - 0 38 213021 38 chain 3638 chr1 249250621 + 161440237 161440276 tRNA-Asp-GAY 44 - 5 44 213010 39 chain 8030 chr1 249250621 + 161440912 161440995 tRNA-Leu-CTG 83 + 0 83 170876 83 chain 396418 chr1 249250621 + 161443053 161447758 HERV9-int 5642 + 19 4812 10222 503 3 4 125 1 0 6 0 1 73 1 2 62 1 0 51 12 100 161 4 0 472 2 3 1257 0 1 1517 0 1 454 chain 3124 chr1 249250621 + 161449340 161449375 LTR12C 1709 + 1120 1155 222491 35 chain 3150 chr1 249250621 + 161465979 161466016 MER33 330 + 197 234 221920 37 chain 25887 chr1 249250621 + 161474673 161474980 AluYk4 311 - 1 311 100495 151 3 9 18 3 0 132 chain 20669 chr1 249250621 + 161491335 161491659 THE1B 368 + 0 348 125076 44 11 26 37 0 1 64 1 0 29 40 48 21 0 1 77 chain 5143 chr1 249250621 + 161493648 161493707 tRNA-Gly-GGY 63 - 5 63 193635 4 1 0 54 chain 8030 chr1 249250621 + 161500131 161500214 tRNA-Leu-CTG 83 - 0 83 170881 83 chain 3638 chr1 249250621 + 161500902 161500940 tRNA-Gly-GGA 38 + 0 38 213020 38 chain 6082 chr1 249250621 + 161506545 161506623 MER11A 1151 + 154 230 184562 45 2 0 31 chain 23593 chr1 249250621 + 161508030 161508329 AluYf4 310 + 11 304 112618 53 2 0 62 1 0 173 3 0 5 chain 22094 chr1 249250621 + 161508788 161509039 L1PA5 6144 - 196 447 119818 251 chain 12448 chr1 249250621 + 161509064 161509234 L1PA5 6144 + 5956 6131 150466 31 0 1 6 3 0 5 1 0 4 0 4 71 0 4 49 chain 6925 chr1 249250621 + 161510030 161510104 tRNA-Asn-AAC 74 + 0 74 178001 74 chain 8661 chr1 249250621 + 161524503 161524609 MLT1B 390 + 261 367 167420 106 chain 28852 chr1 249250621 + 161535696 161536001 AluYa5 310 - 5 310 89662 305 chain 20942 chr1 249250621 + 161572984 161573309 THE1B 368 + 0 348 124144 40 0 15 9 6 6 37 0 1 64 1 0 29 40 48 99 chain 6042 chr1 249250621 + 161581742 161581819 tRNA-Leu-CTG 83 - 7 83 184877 56 1 0 20 chain 123767 chr1 249250621 + 161585745 161587207 SVA_C 1631 - 0 1608 29784 325 4 0 287 15 154 14 13 49 765 25 0 14 chain 4682 chr1 249250621 + 161587986 161588048 MER11A 1151 + 170 230 198741 29 2 0 31 chain 2190 chr1 249250621 + 161588712 161588757 MER11A 1151 + 844 885 236665 16 11 7 18 chain 22921 chr1 249250621 + 161589451 161589750 AluYf4 310 + 9 302 116010 55 2 0 68 1 0 165 3 0 5 chain 23241 chr1 249250621 + 161590241 161590513 L1PA5 6144 - 195 467 114489 272 chain 14409 chr1 249250621 + 161590518 161590716 L1PA5 6144 + 5955 6141 143183 32 1 3 140 14 0 11 chain 8539 chr1 249250621 + 161605862 161605968 MLT1B 390 + 261 367 168069 106 chain 468329 chr1 249250621 + 161663344 161669086 L1PA8 5853 + 108 5853 8096 106 0 1 87 18 6 267 13 28 946 0 1 53 0 3 418 31 5 827 7 6 101 0 3 19 6 6 280 0 2 773 13 17 301 0 1 6 1 0 98 1 2 252 2 1 285 0 7 183 1 15 63 3 0 287 1 0 46 11 9 64 1 0 5 1 0 6 1 2 40 9 8 16 1 0 51 0 1 41 chain 5950 chr1 249250621 + 161669305 161669375 HY3 101 + 10 80 185672 70 chain 26828 chr1 249250621 + 161704661 161704971 L1PA7 6471 - 2 312 96881 310 chain 12842 chr1 249250621 + 161711928 161712100 L1MA2 4263 + 3877 4047 148881 81 9 7 82 chain 43802 chr1 249250621 + 161717397 161717999 MER61F 604 + 0 604 64445 87 3 4 70 0 1 5 2 1 173 8 7 185 1 0 41 2 5 25 chain 31961 chr1 249250621 + 161718302 161718706 MER83 447 - 42 447 80919 356 6 7 42 chain 18612 chr1 249250621 + 161739759 161740054 L1MC2 1988 - 193 484 131182 80 55 51 160 chain 8110 chr1 249250621 + 161766572 161766686 L1P4 1494 - 1105 1220 170432 29 5 6 80 chain 40274 chr1 249250621 + 161768411 161769080 L1PA15 4387 + 3682 4356 68911 118 8 15 58 0 1 14 2 0 45 1 0 70 12 12 74 13 15 26 1 0 53 12 22 11 6 5 35 18 15 42 2 0 14 6 1 28 chain 25812 chr1 249250621 + 161773642 161773928 L1PA3long 6157 - 8 294 100819 286 chain 78179 chr1 249250621 + 161778837 161779756 L1PA5 6144 - 1 932 44424 242 1 2 393 20 23 188 0 4 12 0 4 63 chain 28750 chr1 249250621 + 161782171 161782481 AluYa5 310 - 0 310 90120 183 0 1 33 1 0 93 chain 24334 chr1 249250621 + 161787610 161787907 AluY 311 + 5 299 108453 124 3 0 170 chain 3092 chr1 249250621 + 161792973 161793096 Charlie1a 1436 - 136 244 223077 15 2 5 8 11 0 25 34 33 14 6 0 8 chain 4116 chr1 249250621 + 161795776 161795825 MER21C 908 - 722 771 205698 49 chain 260231 chr1 249250621 + 161798672 161801745 L1PA5 6144 + 2226 6144 15686 84 0 3 211 125 0 211 0 955 299 0 1 203 0 6 222 0 1 875 0 4 843 chain 174977 chr1 249250621 + 161802080 161804061 L1P1 4361 + 15 1995 21464 1215 1 0 765 chain 44916 chr1 249250621 + 161804072 161804570 L1PA4 6152 + 5647 6146 63158 171 0 1 327 chain 26617 chr1 249250621 + 161812060 161812537 L1PB1 5432 + 4872 5427 97609 231 1 2 12 3 0 17 1 0 13 17 12 8 2 0 10 0 3 39 8 6 11 1 0 15 9 102 13 7 6 12 23 21 17 2 0 5 chain 4841 chr1 249250621 + 161851277 161851356 MER21C 908 - 321 404 196875 21 5 10 27 1 0 25 chain 6457 chr1 249250621 + 161887040 161887142 Tigger4b 360 - 21 122 181588 32 11 10 59 chain 27151 chr1 249250621 + 161907372 161907690 L1PA7 6471 + 6152 6470 95751 296 2 1 4 0 1 16 chain 9406 chr1 249250621 + 161909125 161909228 L1PA5 6144 - 18 121 163526 103 chain 19086 chr1 249250621 + 161913006 161913282 THE1D 372 + 90 372 129859 44 0 5 27 33 34 172 chain 27515 chr1 249250621 + 161929192 161929484 AluYa5 310 + 14 306 94616 292 chain 82366 chr1 249250621 + 161960141 161961228 Tigger1 2417 - 0 1108 42599 81 1 2 83 0 2 148 6 7 114 1 0 262 6 9 137 1 13 171 0 3 76 chain 35340 chr1 249250621 + 162023852 162024282 L1PA7 6471 + 6033 6459 75750 250 0 3 13 4 0 20 10 7 133 chain 29447 chr1 249250621 + 162052675 162052985 AluYa5 310 - 0 310 86865 310 chain 99049 chr1 249250621 + 162069419 162070507 L1PA4 6152 - 0 1084 37015 6 4 0 1078 chain 336494 chr1 249250621 + 162070511 162074877 L1PA11 4918 - 525 4910 11984 55 12 7 572 0 4 168 7 0 459 4 1 36 1 0 19 0 1 122 7 4 187 5 6 140 12 15 73 0 8 252 0 4 49 1 0 6 0 1 69 2 0 197 0 1 123 0 1 15 4 1 330 3 6 178 1 21 15 0 3 672 7 6 94 1 0 43 0 7 200 5 4 5 2 0 33 2 1 51 2 0 5 13 12 10 0 1 22 2 0 37 2 0 25 1 0 8 chain 23219 chr1 249250621 + 162094188 162094913 L1PB3 3668 - 106 482 114606 32 6 4 23 1 0 3 1 0 18 351 7 80 8 7 18 21 22 57 1 0 105 chain 125167 chr1 249250621 + 162119671 162121527 L1MA3 4352 - 39 1853 29334 25 1 0 5 2 1 24 2 0 23 4 0 114 51 29 132 18 27 48 13 21 82 0 1 50 0 3 195 0 1 37 0 4 104 1 0 145 1 0 401 4 6 10 55 0 100 3 0 6 0 3 42 9 32 55 1 0 75 5 0 13 chain 112577 chr1 249250621 + 162143109 162144356 L1PA4 6152 + 4890 6148 33506 280 0 1 76 0 4 142 0 6 749 chain 4829 chr1 249250621 + 162201305 162201458 MER33 330 - 101 293 197030 47 82 121 24 chain 31127 chr1 249250621 + 162235023 162235377 L1PA3long 6157 - 0 356 82292 10 1 4 325 1 0 17 chain 5194 chr1 249250621 + 162244042 162244208 LTR32 486 - 28 234 193098 43 90 130 33 chain 22797 chr1 249250621 + 162259254 162259553 AluYa5 310 - 1 299 116590 208 15 16 21 14 12 41 chain 3182 chr1 249250621 + 162263803 162263841 LTR16B2 458 - 0 38 221282 38 chain 106591 chr1 249250621 + 162281371 162282519 L1PA2 6032 - 0 1148 35093 1148 chain 34109 chr1 249250621 + 162282520 162282895 L1P1 4361 + 3732 4107 77470 375 chain 27835 chr1 249250621 + 162286329 162286751 LTR7B 505 - 10 505 93576 41 14 13 76 1 0 85 29 0 3 0 93 28 6 7 33 1 11 105 chain 39335 chr1 249250621 + 162291072 162291519 L1PA5 6144 + 5697 6144 70271 447 chain 27091 chr1 249250621 + 162314945 162315244 L1PA2 6032 - 0 299 95966 299 chain 10512 chr1 249250621 + 162319001 162319184 MLT2D 439 - 254 432 158195 23 4 0 6 0 4 9 1 0 45 4 3 46 14 11 31 chain 21949 chr1 249250621 + 162372028 162372333 AluSc8 310 + 8 303 120430 123 10 14 31 8 0 4 0 1 115 7 0 7 chain 8058 chr1 249250621 + 162372860 162372993 L1MA8 2339 + 1612 1759 170706 22 1 0 6 17 31 43 0 1 44 chain 7248 chr1 249250621 + 162376939 162377056 MER11A 1151 - 0 114 175781 42 1 0 22 6 5 24 2 1 20 chain 25259 chr1 249250621 + 162380434 162380734 AluSp 311 - 0 300 103423 300 chain 50594 chr1 249250621 + 162389149 162389732 LTR14C 587 + 4 587 58582 499 0 1 79 1 0 4 chain 21945 chr1 249250621 + 162395208 162395587 L1MA8 2339 + 1830 2196 120440 10 4 0 94 4 0 24 2 0 51 1 0 90 66 64 33 chain 120197 chr1 249250621 + 162402762 162404238 LTR12C 1709 + 0 1709 30983 202 1 2 43 0 1 52 0 1 127 8 9 238 8 236 201 1 0 5 3 1 99 7 11 481 chain 528527 chr1 249250621 + 162418036 162425107 L1PA4 6152 + 10 6152 4354 152 14 79 522 0 1 276 1 0 1160 0 2 329 978 0 134 24 3 1108 0 2 162 0 1 82 0 1 183 0 1 618 4 0 550 1 3 659 0 1 95 1 0 18 chain 69355 chr1 249250621 + 162420619 162421458 SVA_A 1864 - 0 1290 48658 537 40 454 109 0 37 153 chain 5875 chr1 249250621 + 162426548 162426629 L1PA5 6144 - 0 79 186424 11 3 1 67 chain 30732 chr1 249250621 + 162427363 162427708 SVA_A 1864 + 1523 1864 82982 188 4 0 153 chain 127023 chr1 249250621 + 162435210 162436600 SVA_D 2077 + 52 2066 28812 675 0 516 65 0 98 323 0 10 327 chain 12974 chr1 249250621 + 162449617 162449767 L1PA7 6471 + 6321 6469 148333 138 2 0 10 chain 22916 chr1 249250621 + 162450527 162450810 L1MA3 4352 + 2807 3090 116029 283 chain 36252 chr1 249250621 + 162456373 162457132 L1PA5 6144 - 3 446 74558 10 5 0 22 9 0 7 0 9 319 311 0 76 chain 28955 chr1 249250621 + 162456751 162457056 AluYa5 310 - 5 310 89197 305 chain 43694 chr1 249250621 + 162465238 162465849 MER41B 635 - 21 635 64575 61 0 11 15 0 1 6 1 0 37 31 23 129 5 4 198 1 2 127 chain 20382 chr1 249250621 + 162465922 162466227 AluSp 311 + 11 308 125952 53 7 9 64 5 6 83 9 1 54 3 0 27 chain 24423 chr1 249250621 + 162509649 162509933 AluSp 311 + 21 305 107948 284 chain 9810 chr1 249250621 + 162513264 162513639 LTR8A 794 - 122 537 161542 29 8 0 11 96 99 29 39 51 18 1 0 31 59 93 54 chain 3247 chr1 249250621 + 162520563 162520597 MLT1F2 592 - 127 161 220072 34 chain 9346 chr1 249250621 + 162529071 162529189 THE1C 375 + 257 375 163825 118 chain 17811 chr1 249250621 + 162573076 162573327 L1PA16 3655 - 187 434 133372 178 2 0 32 21 19 18 chain 4816 chr1 249250621 + 162573333 162573393 L1PA16 3655 + 3501 3561 197162 60 chain 37278 chr1 249250621 + 162617176 162617813 MER41B 635 - 0 635 73117 46 35 40 22 1 0 4 10 11 30 32 31 51 26 24 241 4 0 8 4 5 30 1 0 92 chain 40887 chr1 249250621 + 162656003 162656532 L1PA8 5853 - 0 522 68043 93 2 1 18 2 1 51 2 1 9 1 0 10 1 2 4 1 0 54 2 0 45 1 0 233 chain 3507 chr1 249250621 + 162660073 162660111 MIR 256 - 207 245 215240 38 chain 22790 chr1 249250621 + 162699555 162699821 AluSp 311 - 34 301 116632 253 0 1 13 chain 3803 chr1 249250621 + 162705242 162705333 MER5A 189 - 68 164 210351 5 0 3 24 31 33 31 chain 75018 chr1 249250621 + 162706949 162707766 L1PA2 6032 - 2 819 45872 817 chain 124816 chr1 249250621 + 162707766 162709108 L1PA2 6032 + 3886 5228 29445 1342 chain 4676 chr1 249250621 + 162710877 162710930 Tigger4a 237 - 0 53 198804 53 chain 29239 chr1 249250621 + 162712487 162712844 THE1A 353 - 0 353 87849 244 5 0 82 0 1 26 chain 13073 chr1 249250621 + 162714307 162714467 L1PA7 6471 - 6 160 147941 6 6 0 148 chain 517155 chr1 249250621 + 162715799 162721941 L1PA6 6164 + 5 6162 5465 185 5 6 313 2 1 281 17 0 408 10 8 179 8 29 917 1 2 183 4 0 672 0 1 507 5 0 84 0 1 211 0 17 124 0 1 198 1 0 276 1 0 689 0 2 15 2 0 569 0 1 214 0 2 61 chain 12480 chr1 249250621 + 162758390 162758769 MER51C 639 - 7 385 67041 33 27 26 30 0 13 9 6 0 197 19 12 58 chain 47030 chr1 249250621 + 162758769 162759387 PABL_A 660 + 0 652 61181 24 0 15 15 5 14 16 0 9 72 2 0 8 0 1 57 1 2 46 8 7 222 0 2 142 chain 8595 chr1 249250621 + 162759395 162759656 MER51C 639 - 388 639 67041 39 5 4 165 9 0 43 chain 393021 chr1 249250621 + 162776759 162781169 L1PA5 6144 - 1 4433 10357 8 7 0 860 0 4 80 2 5 1623 1 4 227 0 18 156 1 0 724 0 1 64 0 1 657 chain 42617 chr1 249250621 + 162801200 162801730 MER41A 554 + 23 554 65876 264 7 8 259 chain 15668 chr1 249250621 + 162812406 162812743 L1PB1 5432 + 5114 5420 139373 24 1 0 9 16 11 9 2 0 50 6 5 15 1 0 43 1 0 21 3 0 11 9 0 10 13 10 14 2 0 16 15 14 15 1 0 13 1 0 16 chain 33223 chr1 249250621 + 162818680 162819173 MLT2A1 477 - 0 456 78842 52 6 8 18 7 0 192 33 3 33 3 0 51 0 1 98 chain 153122 chr1 249250621 + 162838226 162840260 L1PBa1 4058 + 58 2112 24213 104 1 0 17 0 2 90 0 9 152 1 0 151 1 9 29 11 10 25 1 0 126 1 4 53 0 1 187 1 2 77 1 3 68 2 0 5 0 2 262 8 5 5 0 3 64 2 1 143 1 0 285 0 1 4 1 0 155 chain 104619 chr1 249250621 + 162840260 162841767 L1PB1 5432 + 3937 5409 35507 41 23 20 498 5 4 19 0 5 84 0 1 4 1 0 13 3 0 185 2 4 19 0 8 42 11 1 218 3 0 10 0 1 21 1 0 12 30 23 50 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 11 8 15 2 0 20 1 0 21 1 0 13 1 0 5 chain 91500 chr1 249250621 + 162849597 162850607 L1PA3long 6157 - 0 1023 39131 510 0 13 500 chain 34173 chr1 249250621 + 162850607 162850973 L1PA3long 6157 + 4789 5155 77387 366 chain 5657 chr1 249250621 + 162858072 162858214 MER45C 884 - 632 805 188502 13 4 0 8 51 86 66 chain 5510 chr1 249250621 + 162862098 162862198 LTR9 672 - 550 649 189940 45 21 20 34 chain 5447 chr1 249250621 + 162865692 162865770 L1PB1 5432 - 10 85 190553 18 1 0 12 1 0 22 1 0 23 chain 3445 chr1 249250621 + 162908490 162908530 MLT1J 494 - 330 370 216280 40 chain 21711 chr1 249250621 + 162966533 162966762 AluYb8 318 + 83 312 121347 229 chain 17669 chr1 249250621 + 162978638 162978841 L1PA7 6471 - 14 223 133777 156 0 6 47 chain 108794 chr1 249250621 + 162981642 162983455 L1PB1 5432 - 329 1859 34487 16 6 7 112 4 0 134 19 27 81 9 11 8 0 2 79 9 1 52 1 0 23 1 0 4 0 1 20 0 4 101 0 1 39 10 8 90 307 0 297 0 1 28 1 0 80 0 15 67 0 1 61 1 6 153 chain 5298 chr1 249250621 + 163027797 163027855 L1PA5 6144 - 265 323 192029 58 chain 22620 chr1 249250621 + 163027888 163028146 L1PA4 6152 + 5885 6143 117487 258 chain 18724 chr1 249250621 + 163031896 163032257 Tigger3a 397 + 0 369 130898 18 109 117 29 0 1 126 1 0 78 chain 289543 chr1 249250621 + 163047572 163050783 L1PA4 6152 + 2938 6151 14049 2430 4 6 777 chain 3516 chr1 249250621 + 163051439 163051477 tRNA-Lys-AAG 49 + 0 38 215139 38 chain 45604 chr1 249250621 + 163058749 163059277 L1PA5 6144 - 3 531 62399 528 chain 323969 chr1 249250621 + 163067685 163071679 HERVL-int 5654 + 1645 5649 12441 88 1 0 4 0 1 332 0 9 6 9 0 163 50 0 140 0 4 243 1 0 4 0 2 7 0 2 11 0 3 157 0 15 54 0 9 569 0 2 81 1 9 604 0 1 422 0 8 540 3 0 70 0 8 193 0 1 26 1 2 214 chain 26170 chr1 249250621 + 163071685 163072047 MLT2A1 477 + 1 385 99327 44 15 31 64 0 1 22 9 16 16 1 0 157 1 0 33 chain 28107 chr1 249250621 + 163078324 163078675 THE1A 353 - 1 351 92621 241 1 0 109 chain 120184 chr1 249250621 + 163078677 163080219 THE1A-int 1579 - 0 1579 30994 738 6 24 421 0 1 39 2 7 10 1 3 48 0 2 45 0 1 157 6 14 69 chain 9275 chr1 249250621 + 163080283 163080384 THE1A 353 - 81 182 164189 101 chain 5000 chr1 249250621 + 163080385 163080444 THE1A 353 - 184 243 195139 59 chain 2087 chr1 249250621 + 163080446 163080470 THE1A 353 - 244 268 237769 24 chain 6778 chr1 249250621 + 163080470 163080554 THE1A 353 - 269 353 179124 84 chain 2396 chr1 249250621 + 163087889 163087935 MADE1 96 - 50 96 234245 11 4 5 5 1 0 25 chain 16594 chr1 249250621 + 163121251 163121564 THE1D 372 + 0 332 136684 37 51 49 42 0 4 34 4 10 14 1 0 4 4 0 25 3 19 94 chain 88577 chr1 249250621 + 163128215 163129291 MER11C 1089 - 16 1089 40158 144 8 9 128 8 0 193 10 11 381 2 5 202 chain 73839 chr1 249250621 + 163138653 163139462 L1PA4 6152 - 0 809 46598 809 chain 18953 chr1 249250621 + 163164705 163165014 L1PB2 3958 + 3534 3838 130215 11 1 0 72 1 0 64 1 0 15 12 14 28 0 3 13 2 0 16 9 8 39 5 1 20 chain 33803 chr1 249250621 + 163203321 163203827 LTR7B 505 - 10 505 77936 51 0 1 112 3 4 37 6 61 30 71 0 69 6 9 121 chain 28731 chr1 249250621 + 163212834 163213558 L1PA8 5853 + 5447 5853 90199 117 1 0 45 2 0 69 25 23 39 2 1 19 313 1 92 chain 5179 chr1 249250621 + 163216646 163216732 L1PA15 4387 + 4275 4356 193239 7 0 1 29 2 0 14 6 2 28 chain 154213 chr1 249250621 + 163223442 163225140 L1PA3long 6157 - 0 1702 24072 849 0 4 849 chain 97326 chr1 249250621 + 163225140 163226197 L1PA3long 6157 + 3383 4441 37450 518 0 1 539 chain 64201 chr1 249250621 + 163231946 163232631 L1HS 6032 - 0 685 50916 685 chain 14907 chr1 249250621 + 163252567 163252783 L1MA5 2750 + 2430 2646 141613 130 1 0 52 6 8 10 4 3 13 chain 122175 chr1 249250621 + 163263373 163264981 THE1D-int 1627 - 5 1600 30322 45 1 0 225 25 21 152 1 0 200 1 3 143 14 6 8 0 1 339 4 2 450 chain 15355 chr1 249250621 + 163278552 163278847 Tigger1 2417 - 0 302 140328 42 17 0 10 6 23 33 1 0 18 21 26 14 15 18 118 chain 14321 chr1 249250621 + 163280534 163280714 THE1D 372 - 0 180 143493 60 0 1 87 1 0 32 chain 6572 chr1 249250621 + 163343559 163343643 MER53 195 - 107 190 180681 60 1 0 23 chain 33189 chr1 249250621 + 163401714 163402100 L1PA7 6471 - 5 391 78911 386 chain 5648 chr1 249250621 + 163431978 163432103 ERVL-B4-int 2334 + 500 626 188587 51 44 45 30 chain 5067 chr1 249250621 + 163438305 163438365 5S 121 - 31 91 194451 60 chain 18545 chr1 249250621 + 163448264 163448632 THE1B 368 + 0 368 131374 55 5 0 12 0 32 4 32 0 64 71 76 125 chain 75081 chr1 249250621 + 163449953 163450999 MER11C 1089 + 0 1063 45980 46 1 0 201 0 9 63 0 4 63 1 0 148 82 81 69 5 11 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 21683 chr1 249250621 + 163451022 163451275 THE1B-int 1605 + 1347 1600 121457 253 chain 72434 chr1 249250621 + 163459871 163460657 L1PA3long 6157 + 5371 6157 47290 786 chain 127829 chr1 249250621 + 163467797 163469551 SVA_A 1864 - 216 1858 28612 477 80 1 27 1 0 10 3 0 59 0 1 66 4 7 50 13 11 52 38 0 47 2 0 77 1 0 39 3 0 54 1 4 76 19 21 23 3 0 5 0 3 196 0 1 320 0 7 8 chain 5462 chr1 249250621 + 163468274 163468354 SVA_A 1864 - 1285 1328 124070 40 37 0 3 chain 18747 chr1 249250621 + 163484965 163486930 L1MA3 4352 + 0 1319 130830 15 13 7 15 1 0 30 13 15 22 2 1 72 5 0 46 4 8 55 1586 947 53 0 1 4 2 1 27 chain 15026 chr1 249250621 + 163486963 163487164 L1PA4 6152 - 18 213 141248 104 4 0 43 11 9 39 chain 87403 chr1 249250621 + 163515296 163516279 SVA_B 1603 - 0 1539 40605 432 0 2 149 1 515 25 0 40 376 chain 220919 chr1 249250621 + 163561497 163564432 HERVH-int 3825 + 0 3566 17824 180 0 2 151 12 11 24 1 52 16 33 50 32 90 260 42 0 12 394 15 0 104 5 6 7 0 1 88 9 0 256 0 27 371 4 9 48 0 4 668 0 368 119 2 0 264 chain 24370 chr1 249250621 + 163566393 163566699 MER4E 760 - 5 312 108261 252 0 1 54 chain 157534 chr1 249250621 + 163588672 163590935 L1PB1 5432 - 5 2244 23655 5 2 0 18 1 0 12 1 0 22 1 0 24 47 33 17 5 0 15 1 0 45 1 0 17 1 0 47 7 5 8 2 0 3 2 0 12 1 0 10 5 4 16 6 22 94 1 3 179 7 4 191 4 1 485 9 10 11 2 1 99 2 1 59 2 0 227 8 10 529 chain 556041 chr1 249250621 + 163609757 163615771 L1PA2 6032 - 9 6030 718 1504 0 5 711 0 1 196 0 1 3603 chain 10610 chr1 249250621 + 163686052 163686254 L1P4 1494 - 434 586 157775 35 62 12 105 chain 535937 chr1 249250621 + 163719477 163725495 L1PA3long 6157 - 2 6152 3453 142 6 10 171 0 1 1473 0 4 368 0 1 1023 8 0 328 1 2 661 1 0 1067 11 139 600 13 14 126 0 1 19 chain 208695 chr1 249250621 + 163729601 163732271 L1PA10 4194 + 1489 4160 18590 415 2 1 230 0 3 374 0 4 169 8 12 1004 1 0 4 0 1 33 0 1 48 8 12 135 4 6 45 4 6 120 22 5 33 1 0 10 chain 59770 chr1 249250621 + 163754415 163755080 L1PA4 6152 - 0 663 52949 5 2 0 658 chain 8670 chr1 249250621 + 163780748 163780856 MER30 238 + 127 238 167359 63 0 3 45 chain 103589 chr1 249250621 + 163783841 163785410 L1PB1 5432 - 12 1515 35835 18 1 0 11 1 0 21 1 0 24 2 0 10 12 9 18 16 7 6 1 0 15 1 0 11 3 4 29 1 0 16 5 4 45 32 25 13 1 0 14 61 70 81 0 2 820 14 0 113 43 8 109 chain 539063 chr1 249250621 + 163817661 163823783 L1PA4 6152 - 1 6152 2978 333 0 1 147 0 1 2169 4 2 333 0 1 724 0 4 87 0 11 332 0 15 172 0 1 108 1 0 151 0 2 643 4 0 172 8 7 179 0 1 72 0 1 477 1 0 5 chain 3635 chr1 249250621 + 163858449 163858533 MER58A 224 - 81 166 213057 36 33 34 15 chain 21931 chr1 249250621 + 163879632 163879877 AluYc 301 + 38 285 120494 82 0 2 163 chain 21443 chr1 249250621 + 163893410 163893777 THE1D 372 + 16 372 122360 40 12 3 15 3 0 5 5 0 52 1 5 20 23 37 7 12 0 25 1 0 4 0 1 142 chain 101513 chr1 249250621 + 163906490 163907628 L1PA3long 6157 - 0 1137 36395 10 3 0 785 1 3 339 chain 103366 chr1 249250621 + 163921904 163923255 L1P3 4156 + 410 3913 35906 198 1 0 181 1 13 43 2 0 9 25 26 348 4 14 10 7 8 194 3 1769 242 0 365 83 chain 72909 chr1 249250621 + 163926572 163927627 MER11C 1089 + 0 1063 47064 247 4 13 53 0 4 69 1 0 147 67 66 91 1 5 4 1 0 38 0 1 125 0 1 56 1 0 18 26 18 81 0 1 25 chain 59726 chr1 249250621 + 163930203 163930914 L1PA5 6144 - 1 854 52978 19 1 0 140 1 0 18 0 2 157 10 149 125 0 3 240 chain 41743 chr1 249250621 + 163936677 163937175 MER9a3 513 + 15 513 66974 243 1 0 172 0 1 82 chain 459295 chr1 249250621 + 163959226 163965015 L1PA7 6471 + 5 6465 8431 397 4 5 386 2 128 47 0 24 509 1 2 90 7 4 398 0 2 38 1 0 260 0 1 165 0 555 64 16 8 271 0 2 95 6 14 14 7 13 18 5 7 4 1 0 300 1 0 10 27 1 12 0 1 158 0 1 19 0 7 12 0 1 620 0 4 277 1 0 291 1 0 4 0 1 376 1 0 77 0 2 438 0 1 130 28 0 26 0 2 5 2 0 13 5 0 142 0 1 7 chain 218725 chr1 249250621 + 163973190 163975599 L1PA3long 6157 + 3743 6157 17960 901 0 5 1508 chain 2548 chr1 249250621 + 163994476 163994605 LTR12F 595 - 426 490 232505 20 20 12 20 57 0 12 chain 30296 chr1 249250621 + 164017456 164017774 AluYb8 318 - 0 318 83936 318 chain 22025 chr1 249250621 + 164020137 164020463 L1PA8 5853 + 5534 5853 120120 12 1 0 18 1 0 45 2 0 73 1 0 5 26 26 27 2 1 19 1 0 93 chain 4725 chr1 249250621 + 164024830 164024886 MER53 195 - 128 184 198218 56 chain 239398 chr1 249250621 + 164037357 164041689 L1MA1 4479 - 290 4353 16804 17 1 0 4 39 30 32 2 0 28 7 6 42 1 0 75 52 48 48 1 0 19 4 6 5 1 0 74 1 0 16 2 0 24 1 0 130 156 13 59 2 0 52 21 22 44 117 82 34 8 0 18 8 0 10 1 0 73 4 0 17 25 20 156 2 0 28 1 0 69 22 20 21 25 10 33 1 0 17 0 3 10 2 0 104 4 3 18 6 5 44 7 0 30 1 0 25 1 2 108 1 0 174 0 4 83 0 1 77 14 15 27 7 8 44 11 9 21 6 38 11 49 6 99 0 1 325 9 2 60 0 4 187 1 0 6 0 1 16 23 18 28 0 1 12 0 1 135 0 4 6 2 13 54 1 0 107 1 2 4 1 0 61 0 1 89 20 26 5 3 0 98 4 1 33 0 6 19 21 20 43 1 2 4 1 0 62 1 0 41 0 2 39 127 108 8 1 0 15 1 0 17 1 0 5 chain 12961 chr1 249250621 + 164063936 164064084 L1PA7 6471 + 6037 6185 148390 148 chain 22892 chr1 249250621 + 164064086 164064372 L1PA7 6471 + 6185 6470 116140 271 1 0 14 chain 31681 chr1 249250621 + 164084679 164085110 L1PA8 5853 - 0 424 81350 93 1 0 19 2 1 40 13 12 9 1 0 70 2 0 45 1 0 135 chain 57273 chr1 249250621 + 164085569 164086242 L1PA5 6144 - 0 677 54353 469 0 4 204 chain 97712 chr1 249250621 + 164086261 164087387 L1PA4 6152 - 14 1138 37363 832 8 6 286 chain 303703 chr1 249250621 + 164087390 164090868 L1PA4 6152 + 1512 5004 13258 22 0 5 781 1 0 938 0 3 1034 0 3 53 0 4 649 chain 421122 chr1 249250621 + 164091188 164096306 L1P2 5180 - 7 5178 9510 38 2 1 45 1 0 216 1 0 202 0 2 90 0 14 216 3 0 426 0 11 396 0 1 746 0 3 64 0 1 29 0 1 350 6 0 704 0 1 661 0 25 138 1 0 5 1 0 92 0 1 9 3 2 168 1 0 8 1 0 256 5 4 93 1 12 140 chain 20297 chr1 249250621 + 164103317 164103685 THE1B 368 + 0 368 126236 108 7 9 59 0 2 7 71 68 53 7 6 56 chain 465737 chr1 249250621 + 164135797 164141319 L1PA6 6164 + 610 6162 8196 131 0 2 255 0 6 139 2 8 1174 9 0 243 0 1 606 2 3 12 0 1 75 0 4 253 0 1 765 1 0 552 1 0 455 0 15 191 4 6 227 0 1 272 3 4 150 chain 101909 chr1 249250621 + 164145078 164146338 L1PA8 5853 - 0 1257 36284 93 1 0 19 2 1 52 2 1 5 1 0 72 2 0 46 1 0 196 0 1 146 0 1 28 0 3 179 2 0 105 0 1 145 0 1 34 2 1 127 chain 24324 chr1 249250621 + 164160272 164160593 L1M1 2793 + 1328 1654 108519 228 7 12 86 chain 411154 chr1 249250621 + 164164542 164169848 L1PA7 6471 + 0 6453 9775 101 0 1 99 11 10 118 11 181 305 1 0 174 5 6 24 9 10 145 10 0 11 0 10 29 64 0 282 0 1 309 0 1029 288 0 1 638 2 3 373 7 10 510 0 4 317 0 4 369 0 1 110 0 5 117 3 0 26 1 0 197 0 1 292 8 0 142 0 1 11 5 4 29 17 19 136 chain 552425 chr1 249250621 + 164185267 164191422 L1PA3long 6157 + 6 6157 1143 981 5 1 1523 1 0 4 0 1 2505 0 1 848 2 1 286 chain 7495 chr1 249250621 + 164191821 164191913 MLT1A1 405 + 268 360 174185 92 chain 112359 chr1 249250621 + 164191920 164193543 L1PB2 3958 + 2204 3838 33573 40 2 0 183 0 1 55 0 2 7 9 6 61 2 1 12 8 3 141 6 5 111 0 27 65 1 0 270 0 6 21 0 1 71 0 1 10 5 3 56 1 0 11 5 0 65 44 36 70 1 0 46 0 1 25 1 0 64 1 0 15 0 5 74 1 0 63 chain 196678 chr1 249250621 + 164256499 164258713 L1PA3long 6157 - 0 2228 19452 5 3 0 137 0 8 279 0 1 347 0 3 251 0 1 750 9 13 433 chain 147894 chr1 249250621 + 164258713 164260360 L1P1 4361 + 1692 3340 24890 17 0 1 1630 chain 8455 chr1 249250621 + 164266580 164266693 L1PA8 5853 + 5741 5853 168534 19 2 1 92 chain 4394 chr1 249250621 + 164291489 164291537 AluSg7 307 + 39 87 202017 48 chain 73095 chr1 249250621 + 164296168 164297293 L1PA15 4387 + 3210 4327 46982 152 2 1 187 3 12 187 0 1 4 1 0 56 21 14 6 0 6 55 3 1 41 1 0 124 11 12 31 15 14 16 1 0 55 1 0 16 4 0 9 8 7 33 23 20 44 3 1 12 chain 30174 chr1 249250621 + 164328414 164328732 AluYb8 318 - 0 318 84260 318 chain 68948 chr1 249250621 + 164355124 164355982 L1PA7 6471 - 3 873 48839 128 0 12 21 0 1 218 1 2 446 2 1 18 2 1 22 chain 552440 chr1 249250621 + 164428440 164434490 L1PA2 6032 + 2 6032 1140 254 1 0 1922 22 2 954 1 2 2896 chain 14000 chr1 249250621 + 164446808 164447058 THE1B 368 + 89 368 144579 18 3 4 20 19 50 19 2 0 4 3 0 6 0 3 74 10 9 72 chain 3149 chr1 249250621 + 164456321 164456357 MLT2B3 573 - 2 38 221952 36 chain 17741 chr1 249250621 + 164469116 164469403 Tigger3b 1229 - 1 286 133591 41 30 0 6 4 34 89 1 0 91 1 0 24 chain 274270 chr1 249250621 + 164469419 164472740 L1P3 4156 + 0 3337 14966 236 29 28 21 16 17 20 1 0 86 0 1 277 28 29 1019 0 1 398 3 0 496 0 1 71 0 4 388 0 4 79 0 8 153 chain 20365 chr1 249250621 + 164472765 164473008 L1PA7 6471 + 6227 6470 126014 243 chain 3758 chr1 249250621 + 164509410 164509457 U7 62 - 14 61 210976 47 chain 28544 chr1 249250621 + 164518150 164518448 AluYa5 310 + 3 301 90989 298 chain 115395 chr1 249250621 + 164519771 164521659 THE1B-int 1605 - 0 1605 32646 111 0 2 38 2 0 24 12 5 129 0 16 464 114 115 19 0 2 4 0 1 15 0 1 208 319 22 429 chain 35650 chr1 249250621 + 164521714 164522182 LTR10A 586 - 22 566 75338 50 0 1 74 0 1 162 0 68 10 10 0 57 1 0 17 0 8 41 0 1 7 0 8 39 chain 24573 chr1 249250621 + 164522251 164522601 THE1B 368 - 0 368 107120 75 1 0 84 7 13 20 1 0 6 9 8 103 0 15 44 chain 24772 chr1 249250621 + 164523628 164523924 AluSp 311 - 15 311 106048 296 chain 69939 chr1 249250621 + 164539446 164540286 L1PA7 6471 - 2 840 48415 10 2 0 327 0 1 256 0 1 176 2 0 67 chain 5359 chr1 249250621 + 164644579 164644646 MADE1 96 + 1 85 191446 33 0 17 34 chain 29386 chr1 249250621 + 164646320 164646628 AluYb8 318 - 10 318 87136 308 chain 21848 chr1 249250621 + 164655949 164656212 AluY 311 + 36 299 120824 95 0 2 159 2 0 7 chain 27896 chr1 249250621 + 164730684 164730979 AluYg6 310 - 15 310 93384 295 chain 40510 chr1 249250621 + 164876570 164877192 MER41B 635 - 0 635 68579 68 13 18 65 1 0 4 5 12 6 7 0 110 0 1 204 3 4 14 9 10 73 20 26 20 chain 161135 chr1 249250621 + 164907428 164909270 L1PA5 6144 - 16 1848 23172 627 15 0 207 1 0 19 9 13 261 0 2 703 chain 51012 chr1 249250621 + 164909270 164909834 L1PA5 6144 + 3710 4274 58296 564 chain 527115 chr1 249250621 + 164984614 164991782 L1PA5 6144 - 4 6132 4489 309 1 0 269 0 1 650 0 3 548 0 1 1014 0 1 170 998 0 1132 51 0 210 0 1 585 0 1 25 0 1 410 0 1 44 19 17 456 0 1 106 0 1 171 chain 82984 chr1 249250621 + 164987603 164988573 L1PA3long 6157 - 1 969 42189 4 1 0 52 0 10 5 10 0 241 1 0 380 0 1 155 2 1 119 chain 4830 chr1 249250621 + 165001109 165001168 L1MB2 1706 + 1635 1694 197014 59 chain 4283 chr1 249250621 + 165021352 165021630 MLT1I 406 - 15 294 203443 36 0 1 4 208 208 30 chain 2947 chr1 249250621 + 165034879 165034910 MER33 330 + 37 68 226165 31 chain 23319 chr1 249250621 + 165034924 165035203 AluY 311 + 15 295 114100 117 0 1 162 chain 115884 chr1 249250621 + 165048270 165049801 THE1B-int 1605 + 0 1594 32501 15 0 2 124 0 1 4 1 0 38 1 23 209 13 39 449 4 8 212 0 1 8 5 4 179 12 13 218 0 8 39 chain 18850 chr1 249250621 + 165052834 165054182 THE1B-int 1605 + 0 1419 34766 12 4 6 56 1 0 199 0 6 120 0 64 146 11 10 322 18 19 459 chain 545338 chr1 249250621 + 165054202 165060344 L1PA3long 6157 + 5 6157 2030 143 0 1 1414 0 2 1132 2 0 728 1 2 87 0 1 112 0 1 75 0 1 256 0 2 841 0 1 125 0 1 36 0 1 1190 chain 2517 chr1 249250621 + 165060367 165060547 THE1B-int 1605 + 1419 1599 34766 180 chain 428507 chr1 249250621 + 165072476 165077669 L1PA6 6164 - 11 5198 9342 150 2 1 176 4 1 500 0 7 130 0 1 158 0 1 488 0 3 27 0 1 541 0 1 1135 2 1 502 26 0 48 0 1 41 9 14 76 0 3 26 0 3 1006 33 34 92 2 0 19 chain 3823 chr1 249250621 + 165097496 165097543 U5 65 - 18 65 210031 47 chain 91004 chr1 249250621 + 165129144 165130219 L1PA6 6164 - 12 1085 39292 136 7 0 7 0 7 9 6 0 159 0 1 408 2 5 341 chain 28837 chr1 249250621 + 165261018 165261322 AluYg6 310 + 0 304 89738 304 chain 5409 chr1 249250621 + 165344360 165344428 MER41A 554 + 395 464 190906 32 0 1 36 chain 90789 chr1 249250621 + 165346663 165347676 L1PA4 6152 - 9 1022 39361 1013 chain 26071 chr1 249250621 + 165429145 165429485 THE1B 368 - 0 368 99746 204 1 0 82 6 35 47 chain 13648 chr1 249250621 + 165447365 165447618 L1PB2 3958 + 3610 3838 145789 7 1 0 44 20 0 20 16 15 50 9 7 22 1 0 63 chain 31343 chr1 249250621 + 165449757 165450129 L1PA7 6471 - 2 377 81906 17 0 2 318 0 1 37 chain 9396 chr1 249250621 + 165453219 165453340 MSTA 426 - 282 408 163572 31 0 4 5 0 1 85 chain 7131 chr1 249250621 + 165482930 165483110 L1PB1 5432 - 35 195 176532 5 1 0 22 7 5 19 2 0 10 49 36 4 1 0 15 1 0 44 chain 25095 chr1 249250621 + 165486064 165486334 AluYa5 310 - 3 272 104322 214 1 0 55 chain 72292 chr1 249250621 + 165575662 165576502 LTR13A 966 - 0 966 47337 149 0 120 313 1 0 289 0 7 88 chain 4733 chr1 249250621 + 165587292 165587372 MER20 218 - 112 196 198127 15 1 0 4 8 13 52 chain 78057 chr1 249250621 + 165587943 165588798 L1PA4 6152 + 5288 6143 44488 855 chain 32342 chr1 249250621 + 165596261 165596681 MLT2A1 477 + 0 477 80285 48 0 2 88 0 1 29 1 5 135 5 0 77 1 57 16 1 0 19 chain 46978 chr1 249250621 + 165597585 165598232 LTR76 689 - 7 667 61225 22 2 0 10 13 10 99 1 0 149 0 1 14 0 1 24 11 23 87 2 0 190 1 4 16 0 4 6 chain 16851 chr1 249250621 + 165629240 165629511 MER21A 919 - 2 280 135978 24 1 7 37 14 15 16 1 0 102 1 0 11 17 18 22 0 2 20 1 0 4 chain 6856 chr1 249250621 + 165631823 165631914 HY3 101 - 1 91 178533 49 3 2 39 chain 11866 chr1 249250621 + 165642607 165642755 MER41B 635 + 481 635 152762 30 0 1 35 0 5 83 chain 16252 chr1 249250621 + 165642843 165643049 MER41-int 2638 + 2429 2638 137609 23 0 1 22 0 3 94 1 0 66 chain 4242 chr1 249250621 + 165645436 165645487 L1MC4 1079 + 2 53 203975 51 chain 26461 chr1 249250621 + 165650065 165650416 THE1A 353 - 2 353 98203 135 13 14 92 2 1 109 chain 313438 chr1 249250621 + 165659688 165663456 L1PA6 6164 + 3 6162 12875 61 0 1 54 0 54 28 0 1 179 29 28 100 2 1 418 0 4 215 7 8 90 0 2309 78 0 1 44 0 11 216 0 2 287 0 5 1116 0 1 684 3 5 142 0 1 15 chain 23844 chr1 249250621 + 165729758 165730051 AluSc 308 + 0 294 111217 143 0 1 150 chain 537439 chr1 249250621 + 165747306 165753385 L1PA4 6152 - 24 6146 3247 124 0 1 451 0 5 12 0 1 1030 0 1 1217 1 0 541 7 41 1145 0 2 321 2 0 193 0 2 1035 chain 33680 chr1 249250621 + 165769615 165770036 MER57A1 433 + 0 433 78127 58 1 12 215 1 2 146 chain 12249 chr1 249250621 + 165770114 165770356 L1PA15 4387 + 4092 4327 151212 12 1 0 16 18 22 43 1 0 22 4 0 10 2 1 49 6 3 12 0 1 12 2 0 5 0 2 12 3 1 12 chain 286563 chr1 249250621 + 165770372 165774279 L1PA7 6471 + 0 6464 14256 124 1 2 150 5 6 65 0 1 55 9 0 79 1 47 160 44 2873 998 2 5 71 0 9 828 0 5 147 9 0 19 8 12 140 323 0 152 0 1 154 6 5 212 10 9 135 chain 29580 chr1 249250621 + 165777348 165777658 AluYa5 310 - 0 310 86278 310 chain 42245 chr1 249250621 + 165820885 165821423 L1PA8A 6298 - 7 559 66341 100 6 8 25 1 4 142 0 9 264 chain 35214 chr1 249250621 + 165821423 165821868 L1PA8A 6298 + 5304 5746 75500 27 8 0 155 5 8 76 0 2 174 chain 6561 chr1 249250621 + 165852963 165853037 LTR12F 595 + 402 476 180778 74 chain 16760 chr1 249250621 + 165921141 165921379 Tigger3a 397 + 61 352 136232 14 14 68 22 1 0 187 chain 47233 chr1 249250621 + 165933893 165934434 L1PA5 6144 - 0 541 61015 541 chain 234608 chr1 249250621 + 165936655 165939445 L1PA6 6164 + 0 6159 17059 17 0 1 143 1 3354 456 0 2 389 0 4 538 0 1 205 0 1 377 2 0 250 0 1 269 0 8 143 chain 328716 chr1 249250621 + 165940101 165943604 L1HS 6032 - 0 3503 12249 3503 chain 285720 chr1 249250621 + 165945846 165949828 L1PB1 5432 - 5 3945 14304 5 2 0 18 1 0 13 1 0 21 1 0 15 69 62 10 5 4 42 1 0 16 2 1 52 2 0 9 8 4 11 3 2 4 1 0 20 69 45 67 1 3 21 0 5 89 9 14 243 0 2 194 0 1 71 14 16 217 0 7 165 1 0 226 1 0 194 10 13 121 0 1 80 0 1 71 1 0 53 29 14 381 4 7 278 0 5 100 0 1 18 19 3 191 2 1 355 0 2 137 4 1 145 0 3 69 chain 194384 chr1 249250621 + 165971871 165975417 L1PREC2 3366 - 318 3222 19640 38 3 1 38 22 8 11 3 0 29 5 3 11 8 4 15 34 26 10 12 8 23 5 0 15 1 0 56 2 0 41 1 0 122 6 20 153 0 11 682 319 0 46 1 0 326 3 1 11 10 17 9 0 3 24 6 1 33 16 18 39 15 21 170 0 3 281 0 1 58 323 0 190 2 1 5 0 1 32 2 1 14 18 24 48 9 11 42 7 1 33 4 1 12 37 45 20 2 0 6 8 11 19 chain 66022 chr1 249250621 + 165980668 165981398 L1PA4 6152 - 0 730 50083 730 chain 10540 chr1 249250621 + 166005193 166005322 LTR34 700 + 0 126 158091 12 2 0 19 1 0 95 chain 243333 chr1 249250621 + 166066106 166069435 L1PBa1 4058 + 13 3309 16599 22 2 1 11 29 26 91 1 0 5 5 4 237 0 9 10 2 0 125 1 0 11 2 1 52 49 48 22 29 4 43 5 7 86 0 1 277 3 2 51 2 5 161 3 4 122 19 7 209 1 0 150 0 3 149 5 0 494 1 0 6 7 0 35 1 0 70 3 2 118 6 8 11 4 0 304 17 33 253 1 0 6 chain 535478 chr1 249250621 + 166069453 166075585 L1PA4 6152 + 10 6134 3524 699 1 0 26 0 1 346 5 8 121 22 1 210 0 1 574 0 1 145 1 2 635 0 4 232 0 1 217 0 1 2803 0 1 95 chain 2538 chr1 249250621 + 166075653 166075680 L1PA2 6032 + 5985 6012 232669 27 chain 242501 chr1 249250621 + 166076169 166079494 L1PB1 5432 + 2247 5424 16640 248 2 0 306 0 4 130 7 11 81 2 1 697 7 0 9 7 0 472 6 5 55 1 4 273 0 1 84 3 0 256 5 4 97 0 1 117 123 11 26 1 0 7 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 14 8 16 11 8 14 2 0 24 1 0 21 1 0 10 1 0 19 1 0 4 chain 3480 chr1 249250621 + 166115153 166115201 L1P1 4361 - 660 707 215650 25 2 1 21 chain 33397 chr1 249250621 + 166118091 166118453 L1PA3long 6157 - 208 570 78570 362 chain 10011 chr1 249250621 + 166156268 166156391 L1PB1 5432 + 4967 5090 160532 123 chain 19272 chr1 249250621 + 166156586 166156925 L1PB1 5432 + 5106 5413 129312 8 1 0 23 1 0 10 1 0 10 5 1 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 18781 chr1 249250621 + 166163526 166163789 L1PA8 5853 + 5587 5844 130734 18 9 7 67 1 0 11 1 0 50 2 1 19 2 1 83 chain 316634 chr1 249250621 + 166180473 166184078 L1PA3long 6157 - 5 3618 12736 253 0 1 407 0 3 1124 0 4 626 0 1 441 1 0 753 chain 93385 chr1 249250621 + 166194650 166195701 L1PA3long 6157 - 1 1046 38540 325 6 0 720 chain 92914 chr1 249250621 + 166195708 166196758 L1P1 4361 + 3278 4326 38681 873 1 0 154 1 0 21 chain 130122 chr1 249250621 + 166209212 166212267 L1PA3long 6157 - 0 3012 4983 379 4 5 1825 0 3 99 0 1 637 47 0 25 1 0 38 chain 563872 chr1 249250621 + 166212290 166218321 L1HS 6032 - 0 6031 243 6031 chain 133828 chr1 249250621 + 166218321 166221463 L1PA3long 6157 - 3013 6157 4983 2430 0 7 222 6 7 14 15 9 455 chain 9581 chr1 249250621 + 166234435 166234558 L1MB8 1703 - 1026 1155 162689 78 0 6 45 chain 48791 chr1 249250621 + 166235753 166236290 L1PA3long 6157 - 3400 3937 59820 537 chain 305723 chr1 249250621 + 166236290 166239693 L1PA3long 6157 + 2757 6157 13179 118 1 0 1766 1 0 298 1 0 1218 chain 81164 chr1 249250621 + 166247052 166248575 L1PREC2 3366 - 130 1521 43106 7 4 0 9 10 5 22 237 147 30 12 10 35 35 20 29 69 55 14 11 7 40 1 0 54 7 4 27 0 2 144 0 2 238 0 5 80 0 1 103 1 2 4 1 0 111 0 2 64 3 0 83 11 8 27 chain 39399 chr1 249250621 + 166269603 166270166 L1PB 1623 + 826 1352 70164 138 0 1 314 2 3 4 1 0 16 1 0 9 37 0 41 chain 530731 chr1 249250621 + 166280122 166286264 L1PA4 6152 - 6 6149 4115 5 3 0 840 1 0 308 14 0 334 0 1 28 0 1 112 0 10 52 0 3 724 0 1 1785 1 0 6 0 1 725 6 7 676 1 2 198 0 1 323 chain 4137 chr1 249250621 + 166306061 166306122 ORSL 269 + 21 103 205395 28 6 27 27 chain 4348 chr1 249250621 + 166306192 166306250 L1MA4 2864 + 2747 2803 202610 19 2 0 37 chain 103853 chr1 249250621 + 166311164 166312833 LTR12C 1709 - 0 1709 35757 12 0 3 68 1 0 87 0 102 209 20 13 97 3 1 7 1 0 28 1 0 245 1 0 11 0 119 192 267 51 83 0 43 42 5 6 29 4 5 256 chain 16243 chr1 249250621 + 166317410 166317579 AluYb8 318 + 145 314 137644 169 chain 145161 chr1 249250621 + 166371534 166373331 L1PA7 6471 - 10 1850 25299 138 2 1 5 0 2 170 6 7 388 1 2 127 2 0 404 0 1 77 1 2 129 0 1 52 1 0 191 12 52 91 chain 198129 chr1 249250621 + 166373337 166375733 L1PA4 6152 - 11 2860 19346 328 0 1 491 13 17 532 1 457 631 6 0 175 11 9 208 chain 525118 chr1 249250621 + 166380545 166386664 L1PA4 6152 - 8 6142 4675 135 0 1 884 0 1 494 1 0 22 0 1 151 0 3 770 1 0 140 0 3 29 0 1 1065 0 1 382 7 8 702 5 6 189 0 1 441 0 1 275 1 0 85 1 0 25 17 21 297 chain 522494 chr1 249250621 + 166392706 166399145 L1PA7 6471 - 12 6471 4912 749 2 0 10 0 2 76 6 5 314 0 2 303 0 1 48 1 0 747 0 1 198 0 1 165 2 1 151 0 1 136 0 4 46 0 1 819 0 1 35 7 0 120 0 2 1235 0 2 69 0 4 414 0 6 58 8 7 53 0 3 146 20 21 94 2 3 207 44 38 6 0 6 148 chain 144264 chr1 249250621 + 166399943 166401583 L1PA5 6144 + 4498 6140 25435 767 0 1 735 0 1 138 chain 30731 chr1 249250621 + 166402672 166403012 L1PA4 6152 - 2 341 82983 114 1 0 225 chain 116686 chr1 249250621 + 166441686 166443194 THE1B-int 1605 - 57 1605 32231 637 5 21 193 12 9 169 3 0 5 10 14 43 0 25 309 7 8 115 chain 20885 chr1 249250621 + 166443198 166443518 THE1B 368 - 4 368 124337 121 10 18 47 1 21 34 6 7 47 10 25 44 chain 122713 chr1 249250621 + 166462893 166464244 L1PA3long 6157 - 0 1353 30157 1027 0 1 238 0 1 86 chain 66382 chr1 249250621 + 166464244 166464977 L1PA3long 6157 + 4061 4797 49845 181 0 3 552 chain 24119 chr1 249250621 + 166468139 166469178 L1PA8 5853 + 4158 5176 28236 6 5 0 244 18 0 259 1 2 218 1 4 118 2 0 167 chain 122555 chr1 249250621 + 166469193 166470575 L1PA4 6152 - 2496 3873 30206 453 3 0 890 2 0 34 chain 210335 chr1 249250621 + 166470578 166473018 L1PA4 6152 + 3672 6143 18484 514 0 3 47 0 3 108 0 4 38 1 0 140 0 6 344 1 2 1118 8 23 121 chain 15878 chr1 249250621 + 166473026 166473710 L1PA8 5853 + 5176 5853 28236 388 1 0 44 2 0 70 10 15 7 7 0 40 2 1 19 1 0 93 chain 18265 chr1 249250621 + 166499435 166499994 MER4-int 2692 + 73 325 132168 26 4 3 16 2 0 47 304 0 160 chain 33727 chr1 249250621 + 166502301 166502752 MER4A1 472 + 0 472 78050 206 25 46 220 chain 187956 chr1 249250621 + 166504671 166507313 MER4-int 2692 - 1 2678 20241 5 0 1 208 1 0 39 2 3 147 1 0 3 1 0 5 3 0 10 3 0 31 8 15 95 8 9 21 2 1 4 0 1 95 1 0 53 1 0 80 0 1 31 0 16 37 2 1 25 0 1 110 15 12 52 0 1 8 0 1 95 11 13 306 0 2 63 2 1 169 0 1 113 0 1 58 0 1 53 0 2 125 3 13 174 51 50 201 0 3 5 0 3 18 1 0 63 2 0 22 chain 10800 chr1 249250621 + 166508118 166508286 LTR8 732 + 31 197 156985 8 7 0 25 6 7 97 0 4 25 chain 34397 chr1 249250621 + 166510715 166511157 MER4A1 472 - 0 464 77061 219 8 30 215 chain 14931 chr1 249250621 + 166514847 166515187 L1PB1 5432 - 10 318 141534 4 1 0 14 1 0 13 1 0 19 1 0 26 2 0 14 8 5 13 15 6 8 2 0 4 1 0 16 1 0 44 18 16 52 2 0 5 22 17 8 1 0 24 chain 499863 chr1 249250621 + 166515353 166521885 L1PA7 6471 - 3 6241 6847 117 0 2 131 2 1 219 16 4 103 0 1 269 1 0 338 6 5 699 0 1 7 1 0 484 2 3 248 7 0 41 0 1 89 0 1 11 5 0 46 0 1 29 306 0 113 2 0 19 0 1 498 0 1 116 0 1 236 0 1 132 0 1 22 0 1 110 1 0 82 1 0 108 0 1 31 0 1 4 2 1 21 0 1 288 16 17 806 26 51 541 0 2 180 chain 44365 chr1 249250621 + 166526103 166526829 MER57-int 2662 + 40 2331 63737 30 47 29 9 1 0 52 27 1573 96 0 7 72 3 0 115 30 64 244 chain 7038 chr1 249250621 + 166526838 166526922 LTR54B 464 + 2 87 177195 10 0 1 74 chain 92514 chr1 249250621 + 166536754 166537824 MER11C 1089 - 20 1089 38813 433 1 0 63 1 0 452 0 1 120 chain 4730 chr1 249250621 + 166562660 166562763 AluJr4 308 + 161 264 198168 20 38 38 45 chain 32828 chr1 249250621 + 166563628 166564048 MER1A 529 - 5 423 79492 67 2 0 351 chain 33561 chr1 249250621 + 166570411 166570843 MER1A 529 - 0 432 78303 58 17 16 195 0 1 162 chain 7738 chr1 249250621 + 166571958 166572046 L1PA4 6152 + 5909 5998 172671 56 0 1 32 chain 13668 chr1 249250621 + 166572053 166572207 L1PA4 6152 + 5998 6152 145713 154 chain 77547 chr1 249250621 + 166574602 166575592 LTR5B 1012 - 0 1012 44715 8 0 2 483 0 1 29 1 0 100 25 29 125 6 7 53 0 1 37 0 14 123 chain 188143 chr1 249250621 + 166576373 166579171 HERVK-int 6823 - 302 2973 20223 12 0 1 4 1 0 28 1 0 3 1 0 8 1 0 8 59 43 29 2 0 12 4 2 13 1 0 12 2 0 10 180 100 4 1 0 10 2 0 3 1 0 19 1 0 11 17 11 23 1 0 6 2 0 45 12 8 23 1 0 5 1 0 6 1 0 5 3 0 175 1 0 34 1 0 35 0 2 64 1 0 22 1 0 198 5 4 9 1 0 347 7 8 320 1 2 140 0 1 310 12 13 422 9 12 89 chain 76428 chr1 249250621 + 166579268 166580258 LTR5B 1012 - 0 1012 45243 8 0 2 406 10 15 62 0 1 29 1 0 76 1 2 43 6 5 188 0 1 37 0 14 123 chain 91399 chr1 249250621 + 166621055 166622118 L1PA5 6144 - 5 1067 39165 36 1 0 102 13 13 97 1 0 64 0 1 749 chain 35087 chr1 249250621 + 166622242 166622694 LTR2 463 - 12 463 76066 11 2 1 28 1 0 29 1 2 380 chain 24777 chr1 249250621 + 166623397 166623829 L1HS 6032 - 3730 4062 106015 96 1 2 154 127 26 54 chain 121318 chr1 249250621 + 166623830 166625209 L1PA4 6152 + 4523 5902 30592 112 6 5 1178 0 1 83 chain 10929 chr1 249250621 + 166625209 166625340 L1PA5 6144 + 6013 6143 155519 18 1 0 112 chain 5995 chr1 249250621 + 166632602 166632721 MER2 342 - 84 178 185285 41 16 2 41 11 0 10 chain 66780 chr1 249250621 + 166635791 166636553 L1PA5 6144 + 5352 6132 49742 197 0 17 260 0 1 305 chain 68960 chr1 249250621 + 166636584 166637372 L1PA6 6164 + 5373 6162 48830 630 0 1 158 chain 11902 chr1 249250621 + 166649384 166649598 L1PB3 3668 - 87 277 152591 12 7 3 37 3 1 25 1 0 3 1 0 18 20 4 87 chain 5458 chr1 249250621 + 166655401 166655466 L1PREC2 3366 + 472 537 190443 65 chain 40550 chr1 249250621 + 166662102 166662655 MER41A 554 - 15 554 68508 39 8 1 86 0 4 11 5 6 133 11 2 32 2 0 31 1 0 194 chain 180134 chr1 249250621 + 166665131 166667206 L1PA6 6164 + 4091 6162 20978 1224 1 0 689 6 0 12 1 7 127 3 0 12 chain 13762 chr1 249250621 + 166673567 166673743 L1MA5 2750 + 2383 2559 145395 176 chain 159926 chr1 249250621 + 166676008 166677800 L1PA5 6144 - 1375 3166 23347 1787 1 0 4 chain 120713 chr1 249250621 + 166677800 166679166 L1PA5 6144 + 4770 6138 30650 571 0 1 148 0 1 647 chain 2795 chr1 249250621 + 166681660 166681701 L1M2 1805 + 459 517 228800 4 1 0 8 0 18 28 chain 24706 chr1 249250621 + 166686457 166686782 MER51B 395 + 0 380 106401 93 1 57 94 14 13 123 chain 174769 chr1 249250621 + 166692079 166694437 MER57-int 2662 + 99 2500 21499 89 0 5 121 1 0 284 2 0 91 4 0 17 1 0 160 5 13 41 54 53 251 0 1 96 1 0 45 0 2 370 0 1 126 15 44 85 3 5 46 34 25 235 0 1 22 0 1 4 4 0 9 0 1 44 0 1 32 8 22 58 chain 83868 chr1 249250621 + 166719004 166719933 L1PA3long 6157 + 5226 6155 41960 929 chain 224678 chr1 249250621 + 166721597 166724752 L1PA14 3548 + 319 3465 17621 137 1 0 37 3 0 227 0 1 428 1 0 279 5 0 5 0 1 49 4 7 21 3 12 227 3 1 11 11 11 29 4 5 116 0 9 95 0 1 69 9 10 251 1 0 27 0 2 102 14 13 24 0 2 5 5 4 151 1 0 225 0 1 24 3 1 14 2 0 47 2 0 5 2 0 105 12 8 12 3 1 6 1 0 68 24 23 114 5 1 36 4 2 12 1 0 6 0 6 9 1 0 44 6 0 7 chain 21324 chr1 249250621 + 166724975 166725265 AluSp 311 + 16 300 122777 116 16 11 134 2 1 22 chain 71179 chr1 249250621 + 166731035 166731850 L1PA5 6144 + 5326 6143 47856 21 0 1 457 0 1 337 chain 337622 chr1 249250621 + 166747807 166752367 L1PA7 6471 - 3 4186 11962 7 4 0 153 0 1 399 7 11 144 0 1 112 0 1 18 2 1 635 0 1 35 1 0 352 30 1 584 0 2 8 15 1 338 1 3 53 0 1 109 1 0 11 9 10 317 7 9 514 1 2 99 336 0 207 28 20 23 chain 51288 chr1 249250621 + 166756846 166757583 L1PA14 3548 - 92 849 58123 42 1 0 13 4 3 5 1 0 15 4 2 33 5 1 10 1 0 111 1 0 84 1 0 6 2 0 20 0 1 105 2 0 4 2 0 48 2 0 14 4 43 197 chain 180621 chr1 249250621 + 166770083 166772153 L1P1 4361 - 20 2088 20929 12 2 1 23 1 0 157 1 0 215 1 2 1658 chain 16916 chr1 249250621 + 166781911 166782127 L1P4 1494 - 487 712 135805 199 4 13 13 chain 8191 chr1 249250621 + 166788467 166788565 MSTA 426 - 328 426 169997 98 chain 12507 chr1 249250621 + 166796064 166796222 L1MB3 1562 + 1143 1300 150219 58 1 0 99 chain 11197 chr1 249250621 + 166799067 166799195 THE1A 353 + 225 353 155433 128 chain 117649 chr1 249250621 + 166799195 166800754 THE1A-int 1579 + 0 1570 31909 15 0 2 15 2 1 255 0 1 380 1 2 179 6 7 27 0 1 95 2 7 27 5 6 109 2 3 13 13 11 345 5 6 63 chain 25185 chr1 249250621 + 166834768 166835081 AluY 311 + 0 304 103824 132 5 0 149 1 0 16 3 0 7 chain 14884 chr1 249250621 + 166839366 166839730 MLT1B 390 + 3 390 141674 24 78 83 77 54 58 14 8 28 6 6 0 97 chain 4442 chr1 249250621 + 166841427 166841589 MSTB1 431 + 64 204 201426 37 93 72 13 1 0 18 chain 58246 chr1 249250621 + 166847427 166848351 LTR12 884 + 0 884 53835 57 1 5 261 133 1 19 42 1 30 0 25 159 0 103 169 0 1 53 chain 7071 chr1 249250621 + 166847746 166847879 LTR12 884 + 125 258 109531 133 chain 2233 chr1 249250621 + 166847898 166847940 LTR12 884 + 277 319 109531 42 chain 28179 chr1 249250621 + 166849763 166850171 L1MB1 2102 - 95 486 92377 67 2 0 30 0 1 16 0 2 5 14 0 11 1 0 116 1 0 14 1 0 8 1 0 121 chain 7882 chr1 249250621 + 166859519 166859726 L1PB1 5432 + 5239 5422 171794 42 1 0 21 64 44 24 7 6 16 2 1 11 1 0 18 chain 3269 chr1 249250621 + 166869204 166869243 MER5A1 166 + 47 86 219613 39 chain 29534 chr1 249250621 + 166970032 166970638 L1PB1 5432 + 4864 5422 86500 30 1 0 4 4 3 43 9 5 42 12 14 95 13 0 14 1 0 20 1 0 11 4 3 9 6 2 8 2 0 52 1 3 15 2 1 39 6 5 14 1 0 4 21 8 19 2 0 5 17 14 27 1 0 18 8 7 6 1 0 18 chain 95170 chr1 249250621 + 166995477 166996773 L1PB1 5432 + 4132 5411 38045 337 0 4 51 0 9 72 0 4 12 0 3 139 3 1 311 0 1 27 1 0 12 3 0 5 0 3 15 1 0 8 4 0 10 6 2 9 2 0 53 2 1 15 1 0 41 8 7 12 3 0 2 10 0 29 17 14 5 2 0 26 1 0 19 1 0 13 1 0 7 chain 99832 chr1 249250621 + 166998480 166999679 SVA_B 1603 + 0 1603 36819 13 1 0 6 1 33 17 14 1 344 0 1 8 0 232 147 4 126 29 9 45 28 3 0 107 0 1 33 1 0 285 0 1 140 3 0 6 chain 10318 chr1 249250621 + 167020259 167020402 L1PA8 5853 + 5704 5853 159044 36 2 1 19 1 0 13 0 8 72 chain 17132 chr1 249250621 + 167080256 167081116 L1PB1 5432 + 720 5422 135224 42 1 0 4 9 8 81 389 4258 25 8 6 12 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 3 0 17 30 19 12 2 0 26 1 0 18 5 4 12 0 4 14 chain 26368 chr1 249250621 + 167164682 167164963 AluYa5 310 - 0 281 98541 281 chain 23347 chr1 249250621 + 167170963 167171269 AluSq2 311 + 0 304 113941 8 3 0 135 11 12 149 chain 70304 chr1 249250621 + 167173470 167175168 HSMAR2 1300 - 218 1275 48262 13 1 0 127 1 0 186 309 0 31 10 0 122 53 0 84 272 0 98 86 89 147 0 2 46 0 1 14 10 11 79 2 0 7 chain 2867 chr1 249250621 + 167186004 167186036 MLT1J 494 - 353 385 227555 32 chain 20563 chr1 249250621 + 167205371 167205637 AluSg7 307 - 40 307 125422 124 11 12 131 chain 20352 chr1 249250621 + 167263297 167263580 AluY 311 + 10 277 126054 80 6 9 23 23 4 151 chain 23328 chr1 249250621 + 167283171 167283455 AluSg7 307 + 18 301 114045 113 1 0 170 chain 382053 chr1 249250621 + 167287082 167291838 HERVK9-int 4720 - 0 4548 10695 4 1 0 6 0 1 4 1 0 89 0 4 88 3 4 611 1 0 17 207 0 95 5 1 804 8 5 281 1 0 369 1 0 1108 4 5 353 0 1 4 1 0 216 0 1 4 1 0 68 0 4 401 chain 30113 chr1 249250621 + 167306586 167307171 Tigger2 2703 + 870 1336 84449 69 27 32 137 3 0 20 117 0 69 6 4 35 13 10 82 0 1 7 chain 22300 chr1 249250621 + 167314110 167314394 L1PA8A 6298 + 5991 6291 118912 181 4 16 90 0 4 9 chain 41640 chr1 249250621 + 167325782 167326430 MER50B 698 - 0 685 67106 154 9 8 54 2 4 236 11 37 35 4 5 21 60 66 42 0 3 20 chain 26847 chr1 249250621 + 167333497 167333782 AluYa5 310 + 12 298 96817 259 0 1 26 chain 19119 chr1 249250621 + 167347126 167347457 L1PA15 4387 - 65 385 129770 6 2 0 38 1 0 8 6 3 50 20 13 19 2 1 42 16 20 18 1 0 102 chain 8208 chr1 249250621 + 167428424 167428530 DNA1_Mam 279 + 28 134 169908 106 chain 16347 chr1 249250621 + 167429833 167430047 L1PA6 6164 - 3 218 137350 7 4 0 19 0 5 87 0 1 31 2 1 64 chain 3539 chr1 249250621 + 167449963 167450038 ORSL-2b 485 - 87 157 214735 12 1 0 4 18 14 40 chain 24526 chr1 249250621 + 167478321 167478635 AluSp 311 + 0 311 107402 206 8 10 51 5 0 44 chain 23193 chr1 249250621 + 167528611 167528967 L1PA8 5853 - 0 365 114705 92 3 2 16 1 0 21 5 6 15 24 22 71 2 0 16 0 1 27 1 0 6 0 14 56 chain 22295 chr1 249250621 + 167531320 167531608 AluSc5 308 - 21 308 118931 136 12 12 13 2 1 125 chain 12205 chr1 249250621 + 167534587 167534753 MER30 238 - 2 184 151402 109 4 20 53 chain 43513 chr1 249250621 + 167539240 167539799 L1PA8 5853 - 0 560 64796 93 1 0 19 2 1 52 2 1 5 1 0 59 0 1 13 2 0 45 0 6 265 chain 51721 chr1 249250621 + 167539822 167540468 L1PA8 5853 - 0 639 57807 112 2 1 47 1 0 14 2 1 70 2 0 44 1 0 223 1 0 127 chain 2833 chr1 249250621 + 167544635 167544668 MER61D 487 + 113 147 228193 20 0 1 13 chain 4064 chr1 249250621 + 167559827 167559874 THE1B 368 + 321 368 206423 47 chain 126956 chr1 249250621 + 167566747 167568313 THE1A-int 1579 - 7 1579 28826 392 11 23 80 0 1 425 0 1 100 0 1 278 0 1 94 0 1 5 2 1 125 10 0 44 chain 26547 chr1 249250621 + 167568313 167568665 THE1A 353 - 0 353 97853 67 0 1 84 6 7 84 2 1 109 chain 28350 chr1 249250621 + 167568695 167568996 AluYg6 310 + 0 301 91767 301 chain 9638 chr1 249250621 + 167568996 167569206 MER2B 336 - 88 309 162406 21 41 50 54 8 9 43 9 10 34 chain 5918 chr1 249250621 + 167575561 167575633 MSTA 426 + 0 74 186007 16 0 2 56 chain 6553 chr1 249250621 + 167581927 167582012 L1MB2 1706 - 25 109 180825 70 1 0 14 chain 26355 chr1 249250621 + 167582727 167583012 AluYa5 310 - 15 300 98591 285 chain 8821 chr1 249250621 + 167615772 167615907 L1PA8 5853 - 0 141 166547 26 2 9 58 1 0 19 2 1 15 0 1 12 chain 22653 chr1 249250621 + 167616092 167616376 AluSq2 311 + 8 293 117308 124 1 2 159 chain 24333 chr1 249250621 + 167682066 167682362 AluSp 311 + 1 307 108461 18 1 10 81 0 1 196 chain 6957 chr1 249250621 + 167683961 167684033 tRNA-Pro-CCG 72 + 0 72 177767 72 chain 6948 chr1 249250621 + 167684724 167684796 tRNA-Pro-CCY 72 - 0 72 177843 72 chain 26090 chr1 249250621 + 167689167 167689528 LTR2 463 - 0 346 99661 84 19 20 98 1 0 134 15 0 10 chain 30993 chr1 249250621 + 167707735 167708172 MSTA 426 + 0 426 82529 101 2 0 62 14 6 30 5 6 31 6 4 186 chain 44352 chr1 249250621 + 167712763 167713314 L1PB 1623 - 195 742 63752 123 7 1 114 0 2 307 chain 22859 chr1 249250621 + 167731616 167731952 MER57B1 401 - 65 401 116296 203 30 28 12 6 8 85 chain 93213 chr1 249250621 + 167740243 167741353 SVA_A 1864 - 0 1838 38595 14 0 6 73 0 8 224 1 0 210 40 754 384 0 1 164 chain 50416 chr1 249250621 + 167767863 167768512 PABL_A 660 - 9 660 58700 167 0 1 200 5 6 150 1 0 48 5 11 6 5 0 62 chain 113750 chr1 249250621 + 167774885 167776242 SVA_A 1864 - 3 1846 33163 532 40 12 71 8 410 69 1 0 78 3 0 44 0 116 511 chain 25099 chr1 249250621 + 167788787 167789101 AluSp 311 - 0 310 104295 34 3 2 143 3 0 131 chain 36167 chr1 249250621 + 167829256 167829735 MER1A 529 - 8 487 74683 47 17 18 62 0 3 46 4 0 303 chain 286494 chr1 249250621 + 167834160 167838664 Harlequin-int 5206 + 147 5206 14258 60 0 1 74 1 0 4 3 7 11 0 3 51 0 5 122 3 0 42 1 0 359 0 778 285 0 16 330 1 0 113 10 11 116 8 10 12 258 10 185 2 1 300 5 13 232 0 1 5 1 0 77 4 3 23 1 0 7 0 1 11 213 218 31 0 9 8 208 198 160 4 5 306 8 7 152 81 82 178 0 1 22 4 5 54 13 1 122 0 1 193 6 3 24 chain 6728 chr1 249250621 + 167841179 167841268 L1PA4 6152 + 6062 6151 179487 52 3 2 30 0 1 4 chain 3272 chr1 249250621 + 167851998 167852220 MIR 256 + 33 234 219550 22 172 151 28 chain 1709 chr1 249250621 + 167853243 167853379 L1MA3 4352 - 38 169 54148 26 1 0 5 2 1 24 2 0 67 1 0 8 chain 147559 chr1 249250621 + 167855226 167856939 L1PA5 6144 + 4423 6138 24950 440 0 1 4 1 0 171 0 1 134 1 4 116 1 0 511 0 1 276 2 1 43 1 0 12 chain 10093 chr1 249250621 + 167857029 167857832 L1MA3 4352 - 1111 1946 54148 139 5 17 98 20 24 111 1 2 5 1 0 9 0 2 118 1 0 77 0 15 33 0 1 1 4 0 172 0 3 8 chain 26300 chr1 249250621 + 167866951 167867263 AluYa5 310 + 0 309 98830 10 4 3 239 1 0 4 1 0 53 chain 46197 chr1 249250621 + 167880446 167881017 LTR10C 591 + 0 591 61851 330 0 1 65 0 12 102 0 1 4 13 19 57 chain 22986 chr1 249250621 + 167946129 167946421 AluSp 311 - 0 291 115688 125 0 2 64 3 0 100 chain 58509 chr1 249250621 + 167951768 167952541 L1PA16 3655 - 451 1540 53695 15 0 319 104 0 1 74 17 16 110 2 0 173 1 0 277 chain 29021 chr1 249250621 + 168002542 168002854 AluYb8 318 - 8 318 88904 192 2 0 118 chain 5902 chr1 249250621 + 168013617 168013708 MER2 342 + 155 246 186164 60 0 1 4 6 5 21 chain 63910 chr1 249250621 + 168089033 168089824 THE1D-int 1627 + 819 1622 51048 220 0 1 4 4 12 238 0 3 325 chain 25575 chr1 249250621 + 168089829 168090194 THE1D 372 + 0 372 101848 168 0 4 6 15 17 81 8 9 87 chain 22582 chr1 249250621 + 168121890 168122163 AluY 311 + 16 291 117664 116 0 1 78 0 1 79 chain 33970 chr1 249250621 + 168136070 168136635 MLT2A1 477 - 0 477 77660 39 135 0 17 0 22 226 0 24 92 1 2 55 chain 13025 chr1 249250621 + 168137752 168137983 MER30 238 + 0 238 148159 17 26 22 56 19 2 20 0 22 14 1 7 78 chain 25322 chr1 249250621 + 168144820 168145549 L1MA3 4352 + 3886 4325 103112 207 28 13 7 3 0 53 335 68 24 2 0 24 1 0 6 1 0 29 1 0 8 chain 23357 chr1 249250621 + 168145141 168145410 AluSg 306 + 23 292 113888 269 chain 2696 chr1 249250621 + 168175983 168176231 Tigger1 2417 - 1735 1999 114086 121 28 44 99 chain 130688 chr1 249250621 + 168176417 168177894 SVA_C 1631 - 13 1631 27926 600 33 172 127 14 11 687 0 5 16 chain 2435 chr1 249250621 + 168177904 168178128 Tigger1 2417 - 2000 2224 114086 74 99 98 41 0 1 10 chain 87903 chr1 249250621 + 168216468 168217558 L1PA7 6471 - 2 1150 40413 10 2 0 64 0 55 24 0 1 41 0 1 142 1 0 20 1 0 302 12 9 142 0 6 32 2 5 160 1 0 134 chain 75003 chr1 249250621 + 168217558 168218487 L1P1 4361 - 180 1388 45818 33 1 0 216 10 0 9 0 10 17 0 270 455 4 14 184 chain 133368 chr1 249250621 + 168241850 168247184 L1MA3 4352 - 8 2178 27351 13 3 0 3 1 0 14 2 1 9 0 2 14 1 0 5 14 13 12 2 0 12 4 0 9 5 1 9 13 12 58 16 27 18 3 0 6 8 35 9 50 0 10 0 8 139 1 0 167 5 4 244 20 29 76 1 0 4 7 6 42 10 12 79 6 0 46 3 1 6 0 2 65 6 0 117 3132 0 54 19 25 4 0 1 131 2 1 56 1 0 131 25 24 66 5 0 96 3 1 102 1 0 139 chain 43492 chr1 249250621 + 168243586 168244290 L1PA15 4387 - 36 718 64822 22 7 6 7 2 0 46 18 15 38 2 1 8 5 1 17 0 1 4 1 0 55 1 0 26 5 4 31 3 0 136 1 0 42 4 2 77 11 9 47 1 0 87 chain 29049 chr1 249250621 + 168272287 168272613 L1PA5 6144 - 6 332 88764 326 chain 45526 chr1 249250621 + 168272738 168273363 MER41B 635 - 10 635 62481 157 3 2 102 5 1 209 24 29 125 chain 4464 chr1 249250621 + 168286359 168286410 LTR8A 794 + 29 80 201178 51 chain 5497 chr1 249250621 + 168288648 168288813 L1MB8 1703 - 186 363 190065 31 86 98 48 chain 3278 chr1 249250621 + 168298270 168298309 MLT2F 649 + 272 311 219402 39 chain 43718 chr1 249250621 + 168302439 168302987 MER41A 554 - 0 548 64548 234 0 1 56 6 5 252 chain 19625 chr1 249250621 + 168305972 168306293 THE1A 353 - 46 353 128322 5 0 1 23 2 1 42 2 1 4 0 1 11 14 11 5 1 0 21 18 9 62 1 0 110 chain 125119 chr1 249250621 + 168306293 168307878 THE1A-int 1579 - 0 1579 29353 637 16 13 371 0 7 46 5 3 63 16 16 200 9 0 138 0 1 84 chain 13246 chr1 249250621 + 168317881 168318096 L1PA16 3655 - 857 1070 147300 69 1 3 7 3 0 43 18 17 74 chain 556338 chr1 249250621 + 168318106 168324117 L1PA2 6032 - 6 6025 690 4288 0 1 1023 0 7 700 chain 137389 chr1 249250621 + 168327655 168329253 L1PA7 6471 - 6 1600 26576 6 2 0 322 1 0 516 1 0 77 0 1 594 1 0 78 chain 30539 chr1 249250621 + 168342860 168343195 L1PA4 6152 + 5806 6141 83357 335 chain 35104 chr1 249250621 + 168371601 168372083 LTR15 485 - 10 485 76045 16 7 9 11 7 0 42 5 4 46 2 4 62 0 4 229 8 1 47 chain 45118 chr1 249250621 + 168426428 168426970 LTR14C 587 + 51 586 62915 333 1 2 180 8 0 20 chain 260332 chr1 249250621 + 168427700 168431220 L1PA10 4194 - 34 3549 15681 10 1 0 34 15 12 20 1 2 686 1 0 220 9 10 37 2 0 245 0 1 180 0 4 24 0 4 22 1 0 13 8 6 203 0 1 1034 1 0 6 1 2 45 2 0 48 7 5 306 14 15 46 39 16 12 7 19 87 9 16 124 chain 30022 chr1 249250621 + 168433431 168433787 THE1C 375 - 0 355 84735 26 1 0 329 chain 84746 chr1 249250621 + 168447921 168449085 L1PA11 4918 + 3366 4508 41619 175 5 0 77 7 4 37 11 4 33 9 10 89 0 1 441 1 0 47 0 1 36 22 17 55 3 2 79 2 0 10 10 9 15 chain 154681 chr1 249250621 + 168454400 168456615 L1PA8 5853 + 52 5849 24020 20 2 0 10 2 1 12 52 16 120 39 10 64 0 4 54 33 57 205 0 1 52 2 3640 22 1 0 29 1 0 26 29 13 316 1 6 279 8 10 13 0 1 531 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 89 chain 83823 chr1 249250621 + 168506423 168507427 L1P1 4361 - 1250 2208 41976 98 0 1 127 7 0 334 40 0 398 chain 99968 chr1 249250621 + 168507784 168508989 L1P1 4361 - 20 1226 36785 12 2 1 23 2 1 154 1 0 242 0 6 221 1 2 502 3 0 42 chain 354506 chr1 249250621 + 168515795 168519937 L1PA5 6144 + 2015 6143 11490 136 3 4 116 0 1 851 0 1 46 0 1 507 1 2 449 0 1 182 1 0 453 24 2 406 0 4 490 0 1 464 3 1 10 chain 54201 chr1 249250621 + 168532266 168532928 L1PB1 5432 - 1225 1896 56122 133 0 8 104 2 0 198 6 9 219 chain 79313 chr1 249250621 + 168532928 168534103 L1PB1 5432 + 4217 5424 43902 92 0 1 135 12 13 50 0 4 98 11 13 92 0 1 37 0 3 241 0 52 54 13 11 24 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 60 1 0 15 2 0 8 19 10 13 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 12 1 0 8 chain 2853 chr1 249250621 + 168536994 168537026 MER58A 224 - 146 178 227821 32 chain 28747 chr1 249250621 + 168556327 168556703 THE1C 375 - 0 375 90139 26 1 0 266 7 4 6 0 3 70 chain 139050 chr1 249250621 + 168564520 168566498 L1PA7 6471 - 3 1960 26289 7 4 0 661 308 0 100 0 2 74 0 3 116 0 259 18 0 1 224 0 25 29 1 0 341 0 2 95 chain 10076 chr1 249250621 + 168580748 168580861 L1PA5 6144 + 6031 6144 160189 113 chain 20345 chr1 249250621 + 168597493 168597712 AluYa5 310 - 6 225 126083 219 chain 244697 chr1 249250621 + 168628825 168631530 L1PA3long 6157 - 0 2727 16519 259 1 0 169 0 1 33 0 22 2243 chain 391506 chr1 249250621 + 168647518 168652832 L1PA8 5853 - 0 5371 10405 92 2 1 58 2 3 11 2 0 10 1 0 70 2 0 43 2 1 254 10 11 289 2 0 4 0 1 63 0 1 134 11 25 227 10 0 184 0 1 4 1 0 187 0 7 10 0 3 402 17 32 321 6 5 9 0 4 68 0 1 5 1 3 25 0 3 343 0 4 52 1 0 398 19 16 306 0 8 129 1 0 141 0 1 175 23 2 278 5 6 89 1 0 137 1 0 4 0 1 164 0 16 225 0 3 116 126 144 41 chain 92717 chr1 249250621 + 168685789 168687017 L1PA8 5853 - 0 1218 38740 92 2 1 16 1 0 59 8 7 65 8 6 43 1 0 552 1 3 6 4 0 202 5 4 78 1 0 84 chain 201275 chr1 249250621 + 168713930 168716179 L1PA4 6152 - 17 2294 19118 515 5 34 285 1 0 1443 chain 75370 chr1 249250621 + 168716179 168717023 L1PA4 6152 + 3003 3844 45789 681 3 0 160 chain 7037 chr1 249250621 + 168718555 168718669 L1PB1 5432 - 151 263 177199 39 24 22 51 chain 28956 chr1 249250621 + 168722914 168723222 AluYb8 318 - 10 318 89193 308 chain 46730 chr1 249250621 + 168739052 168739658 L1PA7 6471 + 5874 6470 61431 168 18 0 9 0 4 254 0 6 9 3 0 132 1 2 12 chain 28773 chr1 249250621 + 168755266 168755569 AluYa5 310 - 7 310 90005 303 chain 3269 chr1 249250621 + 168767932 168768024 L1ME1 1623 - 1350 1446 219609 18 27 32 25 6 5 16 chain 27166 chr1 249250621 + 168783000 168783356 L1PA10 4194 + 3808 4161 95703 168 0 2 102 2 0 36 3 1 33 1 0 11 chain 22039 chr1 249250621 + 168790271 168790539 AluY 311 + 40 309 120072 92 0 1 176 chain 117769 chr1 249250621 + 168806003 168807373 SVA_B 1603 + 0 1603 31869 12 8 41 621 0 77 73 0 124 28 1 0 627 chain 24899 chr1 249250621 + 168827572 168827877 L1PA8A 6298 + 5982 6290 105350 199 7 10 99 chain 180958 chr1 249250621 + 168852487 168855323 L1PA4 6152 - 0 2077 20903 10 0 6 97 0 1 251 768 0 706 0 1 452 0 1 552 chain 66869 chr1 249250621 + 168852885 168853613 L1PA3long 6157 - 15 743 49698 728 chain 53398 chr1 249250621 + 168855323 168855923 L1PA4 6152 + 3475 4075 56761 600 chain 4379 chr1 249250621 + 168860623 168860899 L1ME1 1623 + 1251 1522 202201 24 168 170 33 28 21 23 chain 27203 chr1 249250621 + 168871964 168872271 AluYk4 311 + 0 305 95584 132 2 0 173 chain 9873 chr1 249250621 + 168878217 168878336 HSMAR1 1287 + 0 119 161218 119 chain 31757 chr1 249250621 + 168894748 168895174 L1PA8 5853 - 0 418 81239 93 1 0 19 2 1 52 2 1 8 2 1 70 2 0 44 1 0 49 1 0 80 chain 107639 chr1 249250621 + 168897113 168898527 L1PA10 4194 + 2723 4150 34817 10 1 0 109 5 1 7 0 1 76 4 29 180 5 1 226 2 0 38 3 0 213 3 4 111 0 1 62 9 11 312 5 2 33 chain 284457 chr1 249250621 + 168903110 168906977 L1PB1 5432 - 16 3869 14388 12 1 0 13 1 0 21 1 0 24 2 0 11 11 8 19 26 14 14 1 0 44 1 0 15 3 1 52 2 0 9 6 2 11 1 0 7 2 1 24 3 0 5 9 6 288 1 10 98 1 3 78 2 0 246 1 0 190 11 12 199 8 14 71 1 0 68 3 1 90 1 7 318 0 1 40 0 1 13 1 0 121 0 2 33 28 35 152 5 0 123 11 14 33 2 0 23 0 1 277 0 1 4 1 0 48 11 3 211 3 0 5 0 3 194 0 4 66 0 3 436 chain 303580 chr1 249250621 + 168922933 168926591 L1PA7 6471 - 1 3686 13265 1134 1 0 82 1 2 22 2 0 353 1 7 668 1 0 111 0 1 87 0 1 358 0 2 80 9 13 46 2 0 10 0 2 5 4 3 89 1 0 59 0 11 81 0 4 77 1 0 62 0 4 311 chain 516955 chr1 249250621 + 168961882 168968265 L1PA7 6471 - 1 6471 5488 338 0 1 262 0 1 241 0 4 636 2 0 7 0 2 45 0 1 81 0 3 33 0 1 135 0 8 62 0 2 319 0 1 31 0 77 570 1 0 56 0 4 82 2 0 83 76 1 554 0 1 14 2 49 123 1 0 5 32 0 15 0 1 100 0 2 190 2 1 77 0 1 85 0 5 131 2 1 129 0 3 184 0 1 204 0 2 141 0 8 142 0 4 383 0 15 86 8 10 277 10 14 13 0 1 411 chain 29663 chr1 249250621 + 168978073 168978383 AluYa5 310 - 0 310 86009 310 chain 37668 chr1 249250621 + 169021479 169021940 LTR2 463 + 0 463 72589 360 14 15 15 0 1 72 chain 25223 chr1 249250621 + 169026418 169026785 LTR7B 505 - 64 505 103620 14 1 0 65 1 0 33 19 20 27 0 2 28 3 27 12 0 38 19 0 1 40 0 10 105 chain 32242 chr1 249250621 + 169066847 169067235 L1PA7 6471 + 6081 6470 80457 368 1 2 19 chain 23363 chr1 249250621 + 169084157 169084446 AluY 311 + 10 305 113849 29 0 7 77 1 0 9 0 1 138 1 0 34 chain 139534 chr1 249250621 + 169155666 169157415 L1P2 5180 - 1688 3456 26215 175 1 0 47 0 4 32 0 4 10 0 1 107 0 6 177 6 0 3 3 0 136 9 12 4 0 1 71 1 0 14 0 12 352 5 0 212 0 4 384 chain 29410 chr1 249250621 + 169160039 169160349 AluYa5 310 - 0 310 87021 310 chain 29659 chr1 249250621 + 169197633 169197944 AluYb8 318 + 0 311 86030 311 chain 550533 chr1 249250621 + 169220799 169226829 L1PA2 6032 - 2 6032 1370 3700 0 1 2073 1 0 256 chain 27946 chr1 249250621 + 169234059 169234434 THE1C 375 - 0 375 93183 26 1 0 118 4 7 104 3 0 105 0 1 14 chain 26817 chr1 249250621 + 169242296 169242668 L1PA7 6471 - 3 370 96920 7 4 0 95 11 10 255 chain 548742 chr1 249250621 + 169242701 169249076 L1PA3long 6157 - 0 6157 1611 510 5 1 1310 220 2 563 1 0 601 0 1 66 1 0 410 1 2 233 0 1 1287 0 3 426 1 0 423 16 17 301 chain 19921 chr1 249250621 + 169244526 169244746 AluYg6 310 + 93 310 127398 30 3 0 187 chain 305365 chr1 249250621 + 169249671 169253577 L1P2 5180 - 2 3919 13195 4 1 0 42 1 0 43 1 0 68 5 7 192 5 0 7 14 19 155 1 0 283 3 7 158 2 0 5 6 8 278 0 4 93 0 1 947 2 1 66 31 35 327 0 1 21 1 0 79 0 1 553 1 0 272 0 1 239 chain 110422 chr1 249250621 + 169259548 169260884 L1PA7 6471 + 5102 6454 34090 7 0 3 207 0 1 179 2 0 122 1 0 70 0 4 17 0 3 554 1 9 176 chain 150316 chr1 249250621 + 169299169 169301901 L1MA1 4479 + 227 4189 24562 32 0 3 17 10 8 73 2 0 254 416 1638 37 0 1 5 1 0 116 0 2 17 4 81 87 10 0 69 2 1 100 5 3 29 11 10 56 1 0 44 8 0 51 1 0 24 9 7 164 10 8 42 0 3 42 1 0 12 6 0 63 0 1 38 13 15 13 8 1 17 1 0 98 0 1 3 6 0 6 9 7 183 0 1 4 1 0 25 2 0 10 7 6 71 1 0 9 2 1 8 3 1 17 1 0 85 1 0 5 3 0 126 1 0 29 2 0 25 8 7 12 1 0 6 5 3 12 8 1 16 chain 108855 chr1 249250621 + 169303564 169304900 L1PA8A 6298 + 4943 6290 34473 384 11 8 100 0 1 48 1 0 86 0 2 68 17 20 10 0 1 9 0 2 458 0 6 144 chain 140176 chr1 249250621 + 169305173 169306880 LTR12C 1709 - 0 1709 26120 403 16 20 58 0 4 107 2 0 6 1 0 258 0 41 109 41 0 124 1 0 178 7 5 396 chain 26512 chr1 249250621 + 169311332 169311699 THE1D 372 + 0 372 98005 168 20 26 146 2 1 31 chain 4993 chr1 249250621 + 169318391 169318448 MER41A 554 - 87 144 195218 57 chain 22026 chr1 249250621 + 169355674 169355933 AluY 311 + 39 299 120114 93 0 1 166 chain 24684 chr1 249250621 + 169358076 169358382 AluSg7 307 + 0 297 106526 64 2 0 45 1 0 182 6 0 6 chain 53133 chr1 249250621 + 169360711 169361357 PABL_A 660 - 0 660 56939 324 8 13 224 7 16 83 chain 514564 chr1 249250621 + 169369935 169376035 L1PA5 6144 + 2 6144 5718 133 10 1 7 0 35 687 1 0 211 0 3 90 9 0 66 1 0 1001 0 5 68 10 0 36 1 0 53 19 20 233 0 2 517 1 0 454 1 3 410 0 1 191 0 1 248 0 2 139 0 1 473 0 3 172 4 8 15 0 4 696 6 17 96 1 0 40 chain 526940 chr1 249250621 + 169376870 169383265 L1PA7 6471 + 0 6468 4510 408 7 20 237 0 14 30 12 21 326 3 14 1072 1 0 24 0 5 184 0 1 163 0 2 111 7 0 417 0 1 234 0 1 223 0 4 100 1 0 389 1 4 94 6 13 538 16 18 6 0 2 31 0 1 333 1 2 559 0 4 63 1 2 55 0 1 232 2 1 508 chain 12451 chr1 249250621 + 169385490 169385673 L1P3b 214 - 39 214 150454 13 3 0 110 0 1 7 1 0 13 9 4 27 chain 118719 chr1 249250621 + 169398198 169399840 L1PB1 5432 - 131 1770 31524 20 1 0 45 1 0 15 2 1 42 46 32 10 2 1 21 15 11 83 0 4 200 5 4 177 10 7 453 6 20 423 1 5 19 1 2 44 chain 35607 chr1 249250621 + 169399855 169400402 MER51A 677 - 0 677 75406 53 5 0 11 2 1 38 2 0 59 1 0 58 7 3 92 0 1 18 18 17 15 0 135 21 11 19 136 chain 9655 chr1 249250621 + 169404377 169404525 L1MB8 1703 + 1430 1572 162322 5 2 0 47 13 9 81 chain 10445 chr1 249250621 + 169409586 169409718 LTR8 732 - 15 146 158514 31 2 1 99 chain 41697 chr1 249250621 + 169418633 169419181 MLT2A2 560 - 0 560 67032 147 2 13 30 5 7 183 1 0 180 chain 4436 chr1 249250621 + 169420164 169420303 Tigger4a 237 - 14 155 201512 15 12 20 13 50 44 49 chain 20213 chr1 249250621 + 169435773 169436050 L1PA8 5853 - 6 277 126492 87 1 0 19 2 1 52 2 1 8 3 2 69 2 0 32 chain 303670 chr1 249250621 + 169469517 169473424 L1PA6 6164 + 2595 6160 13261 450 0 1 254 0 1 261 0 1 140 1 0 1099 1 3 123 349 5 379 0 4 438 0 1 261 1 0 133 6 0 11 chain 220348 chr1 249250621 + 169473927 169476688 L1PA8 5853 + 3051 5853 17861 231 0 7 126 0 18 33 3 0 64 1 0 434 1 0 195 0 3 206 0 4 520 5 8 12 0 1 71 0 4 21 0 2 75 1 0 107 0 3 368 1 0 43 2 0 72 16 14 47 2 1 19 2 1 52 0 9 31 chain 16108 chr1 249250621 + 169482180 169482372 L1P3 4156 - 867 1059 138030 192 chain 3243 chr1 249250621 + 169496334 169496381 MADE1 96 + 0 46 220140 15 3 2 29 chain 41256 chr1 249250621 + 169503102 169503566 LTR2 463 + 0 463 67585 441 1 0 22 chain 17710 chr1 249250621 + 169519382 169519597 L1PA5 6144 - 12 221 133677 148 7 1 60 chain 14217 chr1 249250621 + 169536480 169536630 L1PA2 6032 + 5878 6028 143823 150 chain 59479 chr1 249250621 + 169609087 169609750 L1PA5 6144 + 5328 5989 53125 55 2 0 606 chain 13414 chr1 249250621 + 169609750 169609897 L1PA5 6144 + 5990 6137 146657 147 chain 331997 chr1 249250621 + 169625202 169629310 L1P3 4156 + 0 4132 12129 251 1 0 69 15 14 67 2 0 338 0 1 150 0 1 130 0 1 75 0 1 85 0 1 23 0 4 70 0 1 270 1 0 204 1 0 28 0 7 97 0 1 558 0 3 179 0 1 74 0 1 40 0 3 732 2 4 16 2 0 127 0 3 48 2 3 197 0 2 218 0 1 8 2 0 7 3 2 16 chain 12251 chr1 249250621 + 169630271 169631155 LTR12C 1709 + 0 837 32420 338 0 43 83 4 5 181 120 79 32 50 0 76 chain 9933 chr1 249250621 + 169630877 169630997 LTR12C 1709 + 928 1048 51013 120 chain 4139 chr1 249250621 + 169631029 169631079 LTR12C 1709 + 1080 1127 51013 30 1 0 8 2 0 9 chain 40972 chr1 249250621 + 169631155 169631650 LTR12C 1709 + 1203 1709 51013 14 7 11 342 0 8 47 1 0 84 chain 412438 chr1 249250621 + 169631749 169636649 HERV9-int 5642 + 0 4812 9735 359 2 0 436 1 0 118 4 0 194 84 0 137 1 0 292 5 6 546 9 8 367 0 2 1366 0 2 979 chain 9454 chr1 249250621 + 169637286 169637447 LTR12C 1709 + 176 338 163300 35 38 39 88 chain 7307 chr1 249250621 + 169637447 169637530 LTR12C 1709 + 381 464 175393 83 chain 15302 chr1 249250621 + 169637534 169637715 LTR12C 1709 + 469 650 140490 181 chain 144 chr1 249250621 + 169637728 169637784 LTR12C 1709 + 941 997 132583 56 chain 11974 chr1 249250621 + 169637784 169638648 LTR12C 1709 + 837 1709 32420 273 1 0 7 3 1 106 0 4 342 0 8 49 1 0 82 chain 38465 chr1 249250621 + 169638648 169639093 L1PA7 6471 + 5097 5542 71497 445 chain 6490 chr1 249250621 + 169639094 169639170 L1PA7 6471 + 5544 5620 181329 76 chain 71451 chr1 249250621 + 169639171 169640004 L1PA7 6471 + 5624 6459 47723 371 0 2 310 2 0 5 6 8 139 chain 24463 chr1 249250621 + 169646227 169646523 AluY 311 + 10 302 107737 123 6 2 167 chain 204849 chr1 249250621 + 169652620 169655422 HERVH-int 3825 + 0 2972 18868 316 29 28 66 8 7 28 0 1 12 69 290 32 0 1 442 30 0 209 23 14 81 19 11 7 0 8 49 0 1 4 1 0 479 4 9 327 8 2 378 11 1 22 1 0 147 chain 37029 chr1 249250621 + 169656767 169657236 LTR2 463 + 0 463 73482 61 0 3 71 0 1 91 0 2 39 13 0 100 0 1 94 chain 5461 chr1 249250621 + 169666411 169666473 LTR12F 595 - 131 193 190405 62 chain 10093 chr1 249250621 + 169680213 169680328 L1PA5 6144 + 6017 6132 160116 115 chain 253544 chr1 249250621 + 169681729 169684777 L1PA7 6471 + 3413 6466 16055 109 2 3 47 0 9 12 0 1 473 0 1 97 0 18 5 18 0 222 0 1 87 0 1 456 1 0 537 6 1 352 1 0 614 2 0 7 chain 41463 chr1 249250621 + 169685873 169686364 LTR15 485 - 0 485 67332 9 1 0 134 10 5 337 chain 25114 chr1 249250621 + 169690231 169690526 AluSc 308 - 3 298 104205 295 chain 25613 chr1 249250621 + 169711667 169712022 THE1B 368 - 0 368 101664 75 7 6 95 2 0 13 0 1 6 1 0 82 0 1 24 6 21 44 chain 8957 chr1 249250621 + 169716333 169716466 Tigger1 2417 - 1704 1845 165846 75 13 21 45 chain 7091 chr1 249250621 + 169718753 169718842 Tigger1 2417 + 1048 1136 176830 66 1 0 22 chain 23645 chr1 249250621 + 169726596 169726941 THE1C 375 - 0 373 112336 25 1 0 14 8 0 87 1 36 27 1 2 79 8 9 94 chain 39436 chr1 249250621 + 169726943 169727472 THE1C-int 1605 - 0 528 70110 250 0 1 59 2 3 74 1 0 45 16 14 37 7 0 6 0 7 32 chain 13043 chr1 249250621 + 169728798 169728998 THE1C 375 - 0 236 148067 26 1 0 73 0 1 26 10 45 18 1 2 45 chain 10053 chr1 249250621 + 169729009 169729129 THE1C 375 - 251 371 160310 120 chain 68168 chr1 249250621 + 169746541 169747296 L1PA4 6152 + 5388 6143 49175 755 chain 17744 chr1 249250621 + 169749687 169749897 L1PA6 6164 - 4 208 133583 11 6 0 193 chain 29955 chr1 249250621 + 169779981 169780300 AluYb8 318 - 0 318 84956 192 1 0 126 chain 3608 chr1 249250621 + 169784116 169784156 MER41B 635 - 85 125 213514 40 chain 118469 chr1 249250621 + 169840659 169842218 THE1B-int 1605 + 0 1605 31626 25 3 0 5 1 4 247 0 2 60 0 2 87 7 32 54 11 19 299 3 4 102 0 1 262 1 0 113 7 14 19 4 5 249 chain 11471 chr1 249250621 + 169842366 169842568 THE1B 368 + 157 368 154419 10 2 0 8 6 7 16 35 45 125 chain 106859 chr1 249250621 + 169851069 169852387 LTR12C 1709 + 0 1709 35014 295 1 3 6 1 0 165 0 1 82 1 0 98 0 278 184 1 0 5 3 1 106 0 4 54 0 1 113 0 102 63 1 0 24 0 10 32 1 0 82 chain 60662 chr1 249250621 + 169874808 169875501 L1PA5 6144 + 5450 6144 52489 566 0 1 127 chain 3373 chr1 249250621 + 169879085 169879154 MER5A 189 + 0 70 217614 23 22 23 24 chain 9486 chr1 249250621 + 169881210 169881353 MLT2B2 565 - 429 565 163136 100 23 16 20 chain 23572 chr1 249250621 + 169972552 169972835 L1P1 4361 - 3598 3877 111835 243 5 1 35 chain 197822 chr1 249250621 + 169972835 169975008 L1PA4 6152 + 3972 6151 19368 14 0 1 364 0 4 1174 0 1 621 chain 148955 chr1 249250621 + 169976653 169978402 L1PA7 6471 + 4702 6467 24765 148 0 1 59 0 1 44 1 0 666 1 0 343 0 2 309 0 14 32 1 2 5 1 0 139 chain 6985 chr1 249250621 + 169982281 169982366 MLT1A0 366 + 245 330 177582 85 chain 6774 chr1 249250621 + 169995044 169995439 MLT1C 463 + 51 444 179151 19 0 1 34 290 287 52 chain 445159 chr1 249250621 + 170018394 170024116 L1PA8 5853 + 112 5853 8899 65 0 4 121 18 6 152 1 0 194 5 2 15 13 11 25 0 3 19 2 1 312 2 0 41 0 3 677 0 2 201 0 4 46 3 2 188 5 0 728 3 7 22 1 6 253 7 1 146 0 1 24 1 0 600 2 1 246 1 11 16 6 9 53 5 6 65 30 17 104 1 2 409 1 0 73 1 0 3 2 0 95 0 3 77 48 82 298 1 0 46 2 0 67 1 0 11 1 0 52 2 1 19 1 0 93 chain 281708 chr1 249250621 + 170028043 170031302 L1PA5 6144 + 2863 6132 14551 301 0 10 232 2 0 56 4 0 688 1 5 95 1 0 5 0 3 295 5 6 386 1 0 732 0 2 5 7 5 293 5 0 6 1 6 138 chain 26417 chr1 249250621 + 170046068 170046384 LTR12 884 + 0 433 98349 272 1 118 43 chain 541120 chr1 249250621 + 170058315 170064340 L1PA3long 6157 - 0 6157 2646 2641 0 1 825 1 0 557 0 4 887 1 0 336 1 129 615 9 10 152 chain 319060 chr1 249250621 + 170072060 170076063 L1PA7 6471 - 1 4054 12634 155 8 7 517 9 15 152 0 2 136 1 4 110 13 2 157 1 2 81 0 31 82 4 7 60 7 8 456 0 1 404 0 2 76 5 0 455 0 4 65 2 6 29 0 4 65 0 1 270 0 4 243 0 3 174 5 1 38 1 2 222 chain 549539 chr1 249250621 + 170076618 170082923 L1PA3long 6157 - 0 6151 1511 16 3 0 375 0 1 2596 0 2 1719 1 3 139 186 30 1270 chain 15704 chr1 249250621 + 170081482 170081653 L1PA2 6032 - 2 173 139250 171 chain 62414 chr1 249250621 + 170087257 170088276 L1PREC2 3366 + 2059 3044 51717 124 18 21 173 0 1 369 10 5 17 0 1 31 5 4 41 11 7 11 72 58 30 3 0 6 27 13 30 14 16 27 chain 68682 chr1 249250621 + 170093728 170094477 L1PA2 6032 + 5278 6032 48948 174 0 4 239 0 1 336 chain 40221 chr1 249250621 + 170108986 170109458 L1PA7 6471 + 5995 6470 69001 261 1 0 198 0 4 12 chain 63285 chr1 249250621 + 170140465 170141438 L1PA14 3548 - 92 1038 51329 42 1 0 16 1 0 11 1 0 9 4 2 13 1 0 4 0 1 15 6 2 10 1 0 86 40 39 67 11 8 13 6 2 109 10 6 48 2 0 14 3 1 250 1 0 30 0 1 121 2 1 25 chain 33570 chr1 249250621 + 170142707 170143131 L1PREC2 3366 + 1310 1735 78287 287 0 1 137 chain 328985 chr1 249250621 + 170155342 170160123 L1PA11 4918 - 414 4898 12236 16 1 0 14 2 0 77 8 7 56 4 0 9 5 4 1011 4 15 241 11 22 45 329 0 195 7 18 30 4 7 9 0 1 101 2 1 100 0 4 232 0 2 20 3 7 68 0 1 21 10 13 100 1 0 10 0 1 79 23 24 135 3 0 41 6 8 337 2 8 167 0 1 227 0 1 156 9 0 340 0 2 45 0 1 258 6 3 33 1 0 10 0 2 12 14 7 21 3 1 14 7 12 16 3 1 4 1 0 38 2 0 22 chain 26201 chr1 249250621 + 170175519 170175889 THE1C 375 + 0 362 99194 179 0 2 5 17 12 126 5 0 38 chain 3982 chr1 249250621 + 170193649 170193718 MER53 195 - 122 195 207655 12 9 13 48 chain 8559 chr1 249250621 + 170193853 170193956 L1MA7 2200 - 251 354 167967 103 chain 5905 chr1 249250621 + 170193979 170194120 L1MA7 2200 + 1964 2071 186140 13 40 17 56 11 0 21 chain 191565 chr1 249250621 + 170204286 170206397 L1PA3long 6157 + 4040 6152 19905 1733 0 1 378 chain 4213 chr1 249250621 + 170219554 170219601 LTR12C 1709 - 991 1038 204394 47 chain 13517 chr1 249250621 + 170229232 170229383 L1PA5 6144 - 926 1077 146295 151 chain 78351 chr1 249250621 + 170229384 170230297 L1PA5 6144 + 5222 6140 44352 367 0 6 396 1 0 149 chain 9197 chr1 249250621 + 170234197 170234379 L1MA3 4352 - 78 246 164567 16 7 5 18 2 0 5 23 15 38 0 1 63 3 0 7 chain 363308 chr1 249250621 + 170248779 170252830 L1PA3long 6157 + 2093 6150 11281 226 0 1 912 0 4 457 1 0 957 0 1 403 0 1 1095 chain 224678 chr1 249250621 + 170339996 170342533 L1PA4 6152 - 9 2560 17620 560 2 6 897 0 1 11 0 2 210 0 1 107 0 4 56 0 2 694 chain 5050 chr1 249250621 + 170344809 170344865 MSTB-int 1649 - 1593 1649 194640 56 chain 148045 chr1 249250621 + 170387364 170389034 SVA_D 2077 + 6 2076 24872 210 1 0 666 8 404 16 12 13 30 0 2 41 0 1 55 0 1 631 chain 48969 chr1 249250621 + 170392676 170393266 L1P3 4156 - 17 604 59773 23 1 0 9 2 0 555 chain 14253 chr1 249250621 + 170394224 170394451 L1PREC2 3366 + 2636 2865 143707 38 0 4 39 1 0 35 2 0 49 13 18 31 7 3 12 chain 442182 chr1 249250621 + 170395926 170401725 L1PA8 5853 + 50 5853 8990 22 7 10 13 49 13 125 20 46 23 18 6 313 0 4 8 0 6 11 7 1 548 14 15 279 0 2 7 2 7 361 2 1 34 0 2 119 10 7 125 7 6 61 58 59 419 8 7 159 2 3 7 1 0 55 3 7 14 0 4 361 0 1 162 0 1 239 0 1 44 2 1 290 0 2 478 4 0 466 1 4 26 0 6 4 0 1 38 4 3 106 0 3 368 1 0 44 2 0 57 24 23 52 2 1 19 1 0 93 chain 9315 chr1 249250621 + 170401728 170401896 L1PA15 4387 + 3838 4006 163991 47 17 15 20 13 12 62 0 3 9 chain 12009 chr1 249250621 + 170414590 170414721 L1PA5 6144 - 6 137 152160 131 chain 516014 chr1 249250621 + 170420885 170427676 L1PA7 6471 - 1 6471 5571 12 1 4 449 8 2 357 0 2 10 13 14 122 6 1 301 1 2 4 1 0 235 1 0 72 3 0 203 0 12 681 1 14 237 0 2 6 11 9 137 0 3 26 0 4 46 0 1 599 0 2 260 4 0 120 0 2 30 2 0 333 325 0 65 47 56 828 0 2 391 0 1 104 37 20 273 19 4 105 0 1 81 0 1 224 chain 4099 chr1 249250621 + 170425567 170425613 L1PA7 6471 + 3113 3159 203499 46 chain 533910 chr1 249250621 + 170433026 170439161 L1PA4 6152 + 8 6141 3715 107 0 1 5 8 7 179 8 9 210 0 3 905 1 0 512 1 0 1237 1 0 77 4 0 429 1 0 1293 0 1 318 1 0 422 0 2 416 chain 27817 chr1 249250621 + 170458757 170459242 L1PA15 4387 + 3893 4356 93645 39 1 0 23 0 1 28 3 0 116 5 4 26 2 1 54 1 0 22 17 12 37 18 15 45 3 1 10 8 2 27 chain 269744 chr1 249250621 + 170473798 170477186 L1PA8 5853 - 3 3365 15194 90 1 0 7 0 17 45 16 14 65 7 4 46 2 1 40 0 1 126 52 0 206 0 1 180 0 6 76 0 1 592 2 0 269 4 8 408 0 1 55 0 1 343 2 3 484 0 1 28 1 2 241 chain 520565 chr1 249250621 + 170538020 170544511 L1PA7 6471 + 3 6469 5100 399 15 16 228 4 3 133 8 12 124 3 1 464 0 2 340 0 1 36 2 3 197 0 1 38 0 3 23 0 2 6 2 0 211 6 0 395 1 0 30 1 2 143 1 0 266 34 6 415 1 0 72 0 1 239 14 3 423 0 1 434 4 8 284 17 18 635 1 0 91 0 3 420 0 5 167 1 2 145 3 0 15 chain 116927 chr1 249250621 + 170570290 170571839 THE1B-int 1605 - 6 1571 32149 78 6 23 102 28 0 348 20 22 5 2 0 250 1 2 163 0 1 148 0 25 398 chain 514854 chr1 249250621 + 170577380 170584122 L1PA7 6471 - 1 6465 5687 4 1 0 90 8 0 7 0 8 163 1 2 99 0 1 120 0 2 357 0 3 702 7 8 294 4 27 4 0 1 4 1 0 355 0 1 1118 0 4 138 6 7 114 5 13 187 7 0 142 330 0 10 0 9 205 1 0 26 7 8 100 0 1 922 0 4 507 7 5 292 0 3 397 chain 251728 chr1 249250621 + 170596445 170599688 L1PA8A 6298 - 7 5160 16138 599 13 8 183 0 8 16 3 7 57 1 2 47 4 5 498 8 1 203 0 17 21 22 0 459 25 4 79 0 6 190 12 10 21 0 1 139 26 17 279 0 1 230 0 1937 108 chain 34912 chr1 249250621 + 170608331 170608886 LTR12F 595 + 9 595 76325 48 0 4 6 0 37 25 36 0 17 4 69 18 45 6 108 1 0 4 0 1 243 chain 6353 chr1 249250621 + 170698679 170698759 MER94 134 - 13 92 182355 43 1 0 36 chain 9397 chr1 249250621 + 170727471 170727659 MSTA 426 - 0 205 163568 81 8 10 11 5 24 34 32 28 17 chain 130734 chr1 249250621 + 170728482 170730030 L1PA7 6471 - 2496 4044 27919 466 8 6 629 0 1 240 0 1 205 chain 17825 chr1 249250621 + 170730053 170730280 L1PA7 6471 + 3980 4205 133321 24 8 6 195 chain 59515 chr1 249250621 + 170730280 170731008 L1PA7 6471 + 4206 4948 53093 468 0 4 179 9 19 72 chain 54816 chr1 249250621 + 170731012 170731677 L1PA7 6471 + 4949 5614 55827 665 chain 34297 chr1 249250621 + 170731678 170732137 L1PA7 6471 + 5618 6064 77216 26 0 3 53 0 2 98 0 9 14 31 4 237 chain 30753 chr1 249250621 + 170732149 170732516 L1PA7 6471 + 6069 6438 82950 196 0 1 39 3 4 129 chain 30512 chr1 249250621 + 170739902 170740305 MLT2A1 477 - 80 477 83403 13 0 2 83 11 4 91 0 1 20 0 1 12 4 1 169 chain 48052 chr1 249250621 + 170742258 170742867 LTR71B 605 - 0 605 60443 20 0 5 228 1 0 200 14 0 8 1 7 137 chain 56638 chr1 249250621 + 170756031 170756937 L1PA15 4387 + 3460 4345 54754 35 15 14 4 1 0 42 0 1 257 2 0 75 2 0 44 1 0 77 1 2 34 3 4 51 14 13 17 14 13 42 1 0 21 4 0 7 9 8 46 6 3 33 13 12 14 5 0 16 chain 4102 chr1 249250621 + 170768297 170768340 L1PA7 6471 + 6252 6295 205910 43 chain 14347 chr1 249250621 + 170768340 170768507 L1PA7 6471 + 6301 6468 143390 167 chain 516281 chr1 249250621 + 170779893 170786031 L1PA6 6164 + 0 6134 5549 449 8 0 15 0 1 4 13 8 90 1 0 55 0 1 396 0 20 413 0 1 11 2 3 866 6 4 98 8 12 455 1 0 287 0 1 110 1 0 230 15 7 605 10 3 789 1 0 1126 0 1 73 chain 25010 chr1 249250621 + 170803527 170803877 THE1B 368 + 0 364 104737 40 0 15 119 1 0 14 9 8 61 0 2 35 7 6 64 chain 70040 chr1 249250621 + 170803908 170804724 L1PA7 6471 - 6 839 48376 6 3 0 309 0 20 498 chain 22036 chr1 249250621 + 170804724 170804989 L1P3 4156 + 3691 3957 119709 97 0 1 168 chain 6019 chr1 249250621 + 170806964 170807156 L1MA2 4263 - 150 332 82499 9 2 1 45 7 0 92 1 0 9 2 1 25 chain 32263 chr1 249250621 + 170807168 170807675 LTR3B_ 500 + 6 500 80418 72 1 0 71 12 13 140 2 0 78 1 0 18 69 22 25 2 39 16 chain 8715 chr1 249250621 + 170807675 170807953 L1MA2 4263 - 332 606 82499 125 13 10 135 1 0 4 chain 39626 chr1 249250621 + 170811425 170811854 L1PA3long 6157 - 539 968 69854 429 chain 48120 chr1 249250621 + 170811854 170812382 L1PA3long 6157 + 5629 6157 60389 528 chain 4008 chr1 249250621 + 170819213 170819273 MADE1 96 - 4 96 207262 34 2 34 24 chain 158745 chr1 249250621 + 170828188 170829932 L1PA3long 6157 + 4393 6142 23493 917 0 4 289 0 1 538 chain 7228 chr1 249250621 + 170838653 170838750 L1P3 4156 - 17 111 175900 26 1 0 6 2 0 62 chain 14911 chr1 249250621 + 170839586 170839764 AluYk4 311 + 126 304 141599 178 chain 28206 chr1 249250621 + 170847681 170847992 L1PA4 6152 + 5728 6039 92284 311 chain 9143 chr1 249250621 + 170847992 170848095 L1PA4 6152 + 6040 6143 164843 103 chain 27373 chr1 249250621 + 170888921 170889277 THE1B 368 + 0 368 95040 44 5 20 105 1 0 31 2 0 168 chain 40628 chr1 249250621 + 170905870 170906347 LTR15 485 - 0 485 68401 113 1 6 21 0 1 240 0 1 27 1 2 74 chain 28914 chr1 249250621 + 170906656 170906963 AluYa5 310 - 5 310 89397 179 2 0 126 chain 74822 chr1 249250621 + 170921062 170921896 L1PA5 6144 + 5305 6139 46102 834 chain 334529 chr1 249250621 + 170923974 170972832 L1PB1 5432 - 8 5419 12039 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 49 36 15 1 0 44 8 7 9 3 2 49 30 23 9 1 0 23 7 0 12 5 0 21 0 4 25 2 1 5 0 1 91 1 0 301 0 1 24 0 1 753 0 1 137 39 1 224 0 3 107 43386 0 398 4 5 4 1 0 153 1 0 347 7 0 239 4 3 55 0 2 48 0 1 116 0 4 150 0 1 458 22 16 7 1 0 226 9 12 397 0 5 72 0 1 37 9 17 569 12 13 33 chain 28426 chr1 249250621 + 170944891 170945297 L1PREC2 3366 - 2736 3134 91484 139 6 5 6 1 0 9 2 1 64 1 0 113 1 0 36 2 0 12 1 0 13 chain 152776 chr1 249250621 + 170948920 170950859 L1PA8A 6298 + 4364 6291 24256 20 0 5 96 0 2 332 1 0 156 32 1 214 0 1 298 2 1 80 1 4 112 0 5 105 0 1 12 0 1 283 0 2 85 1 2 109 chain 73319 chr1 249250621 + 170968324 170969453 L1PB1 5432 - 8 1081 46779 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 17 6 6 1 0 16 1 0 39 12 11 9 2 1 53 2 0 9 16 11 13 4 3 28 15 0 51 1 0 5 2 3 104 4 0 140 1 0 170 5 2 241 3 2 34 chain 90328 chr1 249250621 + 170979092 170980200 L1PA7 6471 - 4 1116 39526 6 2 0 224 0 4 105 0 8 224 0 2 275 9 0 214 0 1 49 chain 5445 chr1 249250621 + 170985017 170985135 MER63B 433 - 209 343 190574 56 37 53 25 chain 234198 chr1 249250621 + 170988824 170991905 L1PA8 5853 + 2757 5853 17082 211 0 3 92 0 2 5 3 1 162 3 5 155 0 1 520 2 5 70 0 1 280 0 1 348 0 1 47 0 1 8 17 22 132 0 1 156 0 4 19 3 0 98 0 3 416 5 4 33 1 0 36 10 8 71 1 0 5 5 4 51 3 2 19 1 0 93 chain 2949 chr1 249250621 + 170993259 170993300 L1MA9 1812 - 95 135 226085 13 1 0 27 chain 265370 chr1 249250621 + 170996249 170999997 L1PA8A 6298 - 10 3530 15423 665 4 5 60 3 4 63 0 15 5 2 0 88 7 14 170 0 1 10 5 10 576 0 2 130 1 12 52 7 11 103 16 16 51 11 0 35 0 1 41 272 0 94 1 0 91 13 12 79 1 2 378 4 5 45 0 3 17 0 4 14 1 0 5 1 2 226 0 1 31 3 4 367 chain 263933 chr1 249250621 + 171011984 171016227 L1MA1 4479 - 318 4251 15490 10 1 0 8 2 1 35 3 1 28 1 0 45 1 2 79 3 0 5 1 0 84 9 8 9 3 1 19 1 0 54 0 1 5 13 21 6 2 0 24 1 0 193 7 5 32 4 0 97 3 0 73 5 0 48 6 9 7 1 0 9 0 2 41 1 0 21 0 1 20 2 0 172 2 0 27 1 0 82 3 4 28 6 8 32 1 0 13 0 1 19 2 0 10 4 0 6 5 9 144 7 6 394 0 5 4 1 0 73 1 0 33 2 0 29 337 0 95 0 2 29 11 10 63 0 2 26 14 15 129 6 5 19 5 6 22 11 10 471 11 9 92 7 11 46 1 4 70 1 5 97 0 5 24 23 48 39 0 4 20 0 3 92 1 0 51 1 0 171 5 6 60 0 1 18 2 0 50 chain 77551 chr1 249250621 + 171023329 171024478 L1PB1 5432 + 4121 5281 44712 37 6 10 111 2 1 89 11 10 71 2 3 20 0 5 53 0 1 37 6 21 15 0 4 15 1 2 371 7 0 101 5 4 11 6 5 16 2 0 10 1 0 12 2 0 3 2 0 61 4 3 13 1 0 45 chain 148181 chr1 249250621 + 171027135 171029069 L1PA8A 6298 + 4333 6229 24859 349 18 11 132 11 9 88 0 5 287 0 1 128 0 5 141 69 16 91 1 4 297 4 14 266 1 0 4 1 2 46 chain 19910 chr1 249250621 + 171046211 171046516 THE1B 368 + 0 368 127440 40 0 15 111 7 6 34 33 82 80 chain 136972 chr1 249250621 + 171047272 171048767 L1PA3long 6157 + 4662 6157 26647 1495 chain 225950 chr1 249250621 + 171065943 171068491 L1PA4 6152 - 11 3455 17533 1148 0 1 364 0 1 644 3 897 389 chain 3697 chr1 249250621 + 171091576 171091722 LTR16B2 458 - 310 432 211986 19 93 69 34 chain 2183 chr1 249250621 + 171091655 171091678 LTR16B2 458 - 398 421 236811 23 chain 19047 chr1 249250621 + 171095270 171095614 THE1B 368 + 0 368 129983 44 0 15 112 1 0 27 93 103 67 chain 24019 chr1 249250621 + 171118212 171118555 L1PA8 5853 - 0 346 110218 39 12 23 32 1 0 18 2 1 47 2 0 13 2 1 71 2 0 44 1 0 57 chain 47128 chr1 249250621 + 171128170 171128777 MER41B 635 + 0 612 61105 117 11 12 337 3 2 79 0 5 60 chain 22525 chr1 249250621 + 171132908 171133154 L1PA2 6032 + 5785 6031 117912 246 chain 269384 chr1 249250621 + 171183304 171186916 MER61-int 3695 - 0 3695 15212 341 21 1 201 2 1 254 42 42 90 1 0 96 0 1 108 5 8 446 0 3 519 9 5 93 0 2 351 0 5 11 0 1 253 12 17 67 6 7 23 0 1 11 0 97 50 0 11 7 11 0 24 0 1 122 20 14 139 1 0 86 4 5 129 3 2 20 20 16 14 chain 50737 chr1 249250621 + 171188363 171188954 LTR10C 591 + 0 591 58474 591 chain 48491 chr1 249250621 + 171193361 171193958 LTR10C 591 + 0 589 60118 420 17 9 160 chain 43069 chr1 249250621 + 171197328 171197857 LTR12_ 688 + 2 688 65337 147 0 24 269 0 133 113 chain 70183 chr1 249250621 + 171205243 171206268 MER11A 1151 - 0 1143 48317 163 6 7 60 0 1 36 18 0 22 19 49 123 5 6 145 0 1 92 17 18 134 4 0 43 0 7 16 2 1 71 1 100 48 chain 458668 chr1 249250621 + 171206387 171212535 L1PA8A 6298 + 100 6287 8453 19 49 42 12 1 0 4 1 0 4 0 1 6 4 1 15 75 62 42 1 0 9 22 14 77 2 0 12 4 3 9 1 0 3 1 0 76 1 0 139 66 68 59 6 7 337 7 5 496 4 5 15 19 20 657 8 11 4 0 1 14 0 1 9 0 1 140 2 3 466 0 4 56 0 2 73 0 1 118 0 1 129 19 13 246 1 8 232 1 2 17 0 1 172 0 2 29 0 1 63 0 1 41 0 3 244 16 17 7 0 2 24 0 2 307 0 11 19 1 2 329 10 12 329 0 2 79 0 2 239 11 12 57 1 5 84 0 2 6 2 0 16 0 9 181 6 7 23 0 12 62 chain 74016 chr1 249250621 + 171213251 171214416 L1PB1 5432 + 4311 5422 46502 12 10 12 292 2 0 170 3 2 6 0 1 287 14 10 11 17 0 20 3 0 8 3 2 12 2 0 3 2 0 9 6 4 48 2 1 15 1 0 44 1 0 16 2 0 6 16 6 18 9 6 14 2 0 23 2 1 20 2 1 13 1 0 18 chain 26297 chr1 249250621 + 171237954 171238299 THE1B 368 + 0 356 98843 44 1 16 114 1 0 116 3 0 66 chain 117293 chr1 249250621 + 171238307 171242113 THE1B-int 1605 + 0 1604 32027 269 2275 44 29 0 2 88 0 25 8 0 2 63 1 0 325 4 5 256 4 7 414 3 0 67 chain 28233 chr1 249250621 + 171261235 171261543 AluYa5 310 + 0 307 92180 132 2 1 174 chain 456298 chr1 249250621 + 171274588 171280122 HERV9-int 5642 + 11 5566 8530 26 0 1 562 2 0 110 8 6 129 3 1 74 0 2 176 3 5 5 3 0 125 13 11 784 0 1 854 0 1 53 0 1 86 1 0 250 0 10 345 1 0 4 3 19 323 0 1 22 4 6 5 2 0 53 1 2 500 3 5 661 1 0 227 6 4 13 6 8 15 19 17 11 1 0 41 chain 38475 chr1 249250621 + 171281541 171282056 LTR12F 595 + 0 595 71482 103 10 5 20 5 21 20 0 66 138 0 4 126 1 0 92 chain 24599 chr1 249250621 + 171282109 171282418 L1PA8A 6298 - 7 318 107004 76 5 2 45 6 11 177 chain 22675 chr1 249250621 + 171316913 171317377 L1PB4 2604 + 2175 2542 117187 36 6 0 60 6 8 33 0 19 47 2 0 6 76 2 26 0 2 50 39 1 77 chain 529385 chr1 249250621 + 171328364 171335145 L1PA7 6471 + 0 6469 4260 403 11 0 312 3 4 357 0 1 261 0 1 35 1 0 187 2 1 567 0 1 38 1 0 113 0 1 353 9 12 193 7 10 8 3 0 195 0 1 42 0 4 384 1 2 5 2 0 9 1 0 236 0 1 211 1 0 1071 1 0 337 314 0 46 0 2 97 0 1 100 0 4 8 0 3 85 3 2 417 4 0 206 7 8 134 chain 57227 chr1 249250621 + 171338896 171339558 L1PA5 6144 + 5312 5973 54383 71 1 0 590 chain 14596 chr1 249250621 + 171342504 171342700 LTR26B 539 + 0 189 142609 183 7 0 6 chain 553294 chr1 249250621 + 171342725 171348717 L1PA2 6032 + 35 6032 1038 3257 1 0 1224 0 5 678 0 1 832 chain 49814 chr1 249250621 + 171359634 171360253 LTR12_ 688 - 15 688 59147 65 0 27 238 0 2 137 0 24 158 0 1 21 chain 17111 chr1 249250621 + 171365620 171365888 LTR19C 757 + 0 257 135280 51 2 0 10 1 0 28 11 7 11 5 2 59 1 0 26 1 0 16 0 1 46 chain 50796 chr1 249250621 + 171366796 171367460 PABL_A 660 - 0 660 58436 332 5 1 37 11 12 10 1 0 268 chain 29428 chr1 249250621 + 171367551 171367937 LTR7B 505 - 14 505 86942 37 16 13 82 1 0 78 1 3 17 0 97 49 0 10 105 chain 4921 chr1 249250621 + 171369938 171370225 L1M4c 1769 + 1433 1724 196033 58 205 209 24 chain 24475 chr1 249250621 + 171370236 171370526 AluSp 311 + 12 302 107673 290 chain 27758 chr1 249250621 + 171370580 171370871 AluYd8 298 + 0 291 93839 291 chain 15709 chr1 249250621 + 171371317 171371528 MER30 238 - 0 238 139237 39 3 0 41 0 6 18 1 25 109 chain 75321 chr1 249250621 + 171373779 171374738 LTR13_ 950 - 0 950 45866 266 9 1 5 4 0 288 1 0 139 0 4 88 8 12 118 7 3 26 chain 34438 chr1 249250621 + 171376640 171377073 L1PB1 5432 + 1832 2265 77010 433 chain 57412 chr1 249250621 + 171382828 171383595 LTR17 781 - 0 781 54284 454 1 0 171 1 0 24 1 33 25 18 3 11 2 1 59 chain 47902 chr1 249250621 + 171388845 171389473 PABL_A 660 + 25 649 60555 60 0 9 234 20 13 289 14 8 11 chain 7715 chr1 249250621 + 171391318 171391436 LTR39 781 + 14 125 172829 15 21 14 82 chain 4981 chr1 249250621 + 171394301 171394358 MER1B 344 - 0 57 195344 57 chain 14521 chr1 249250621 + 171394392 171394605 MER50B 698 + 18 265 142825 31 1 3 74 0 7 38 1 0 36 7 33 25 chain 39392 chr1 249250621 + 171399166 171399638 MER4A1 472 + 0 472 70176 472 chain 5931 chr1 249250621 + 171407356 171407423 MSTB 430 - 346 414 185871 29 0 1 38 chain 61348 chr1 249250621 + 171420854 171421734 L1PA11 4918 - 340 1192 52174 11 2 0 13 1 0 15 31 22 9 1 0 20 1 0 14 2 0 26 11 0 34 1 0 6 2 1 12 1 0 60 8 4 17 1 2 123 0 5 458 chain 24297 chr1 249250621 + 171508146 171508443 AluSp 311 - 16 311 108668 13 3 5 243 5 1 33 chain 515102 chr1 249250621 + 171519622 171525696 L1PA6 6164 - 13 6164 5660 728 0 3 123 0 4 1603 0 2 497 9 4 435 0 1 255 2 1 170 0 2 325 0 6 1131 0 13 88 0 53 20 5 6 152 6 3 12 19 18 240 0 2 254 chain 3529 chr1 249250621 + 171542238 171542310 MER6B 211 + 120 199 214892 16 19 26 37 chain 3079 chr1 249250621 + 171543403 171543448 MER33 330 + 244 288 223351 5 0 1 5 2 0 33 chain 31752 chr1 249250621 + 171569591 171570063 LTR2B 499 + 9 499 81243 5 1 0 25 0 10 20 11 0 42 3 22 96 24 20 10 0 5 235 chain 56977 chr1 249250621 + 171571223 171571959 Harlequin-int 5206 + 135 887 54544 12 2 0 17 0 2 122 0 1 17 0 4 46 10 14 114 2 0 8 0 10 369 1 0 16 chain 17632 chr1 249250621 + 171576981 171577329 THE1B 368 - 15 368 133902 41 1 2 5 2 0 65 0 8 18 56 53 22 35 36 103 chain 36366 chr1 249250621 + 171584571 171585043 LTR2B 499 + 0 499 74410 14 0 1 9 0 10 40 3 0 37 3 22 175 0 1 8 1 0 182 chain 9845 chr1 249250621 + 171589080 171589202 MLT2A1 477 + 260 385 161367 79 0 3 43 chain 53196 chr1 249250621 + 171589331 171590401 MER4E1 777 + 0 777 56897 22 4 7 79 4 7 214 1 20 133 0 1 16 8 7 5 0 1 32 9 7 24 326 5 149 0 4 44 chain 28374 chr1 249250621 + 171598453 171598799 THE1A-int 1579 - 0 346 91683 198 3 4 100 1 0 44 chain 22712 chr1 249250621 + 171599985 171600269 AluSq10 312 + 20 302 117023 277 2 0 5 chain 33371 chr1 249250621 + 171601277 171601721 MER4A1 472 + 0 472 78618 225 5 27 16 6 7 123 3 8 66 chain 6088 chr1 249250621 + 171640760 171640852 MLT1C 463 - 373 463 184503 40 0 1 17 3 5 10 5 0 17 chain 541258 chr1 249250621 + 171657977 171665559 L1PA3long 6157 - 1 6157 2629 141 0 2 6 1 0 5 1 0 1041 1 3 3104 1561 0 785 1 0 160 0 128 199 0 4 301 0 1 123 0 1 152 chain 136315 chr1 249250621 + 171662285 171663828 SVA_C 1631 - 7 1625 26780 669 1 0 45 1 0 46 1 0 8 5 41 627 0 37 130 0 1 4 0 4 6 chain 8151 chr1 249250621 + 171687184 171687281 MLT1E 632 + 535 632 170227 97 chain 162716 chr1 249250621 + 171690706 171693623 L1PA5 6144 + 4294 6144 22976 1280 0 1 71 1068 0 498 chain 75489 chr1 249250621 + 171692100 171693120 MER11C 1089 - 37 1083 45772 127 1 0 25 0 1 9 0 1 101 5 13 144 4 15 17 62 65 272 0 3 253 chain 16371 chr1 249250621 + 171694160 171694441 L1MB3 1562 - 75 333 137280 47 42 22 66 1 0 88 4 0 18 0 1 8 0 1 7 chain 19687 chr1 249250621 + 171700345 171700567 L1PA4 6152 + 5930 6152 128138 222 chain 19639 chr1 249250621 + 171726106 171726398 MER83B 357 - 44 357 128288 159 36 57 46 1 0 4 0 1 46 chain 10622 chr1 249250621 + 171730950 171731132 MER83B-int 1116 - 200 359 157725 38 31 14 84 6 0 23 chain 20963 chr1 249250621 + 171733225 171733510 MER83B 357 - 28 357 124059 114 0 1 62 12 55 46 1 0 5 5 6 40 chain 5995 chr1 249250621 + 171733853 171734010 L1MA6 2487 - 192 318 185286 4 1 0 14 2 0 19 61 33 56 chain 7423 chr1 249250621 + 171785017 171785109 L1PA8 5853 + 5761 5853 174629 92 chain 52574 chr1 249250621 + 171825163 171826011 L1PREC2 3366 - 330 1141 57252 26 6 4 35 37 20 29 2 0 12 10 5 17 40 25 9 3 0 4 1 0 7 0 1 36 1 0 52 1 0 43 1 0 320 5 4 40 6 19 33 2 0 70 chain 37022 chr1 249250621 + 171843969 171844470 L1PA16 3655 - 63 562 73489 13 4 1 13 0 3 141 5 6 125 2 0 86 1 0 111 chain 26149 chr1 249250621 + 171851204 171851498 AluSp 311 + 0 297 99404 91 0 3 203 chain 178869 chr1 249250621 + 171863733 171865822 L1PA6 6164 - 5 2033 21087 143 0 8 7 9 0 55 1 0 85 50 0 267 0 1 278 1 0 995 9 0 189 chain 31595 chr1 249250621 + 171888297 171888661 L1PA7 6471 - 1 364 81499 21 1 0 342 chain 58958 chr1 249250621 + 171894669 171895513 L1PA17 2846 - 307 1134 53422 4 1 0 18 5 0 18 5 0 5 0 1 162 0 1 233 22 26 35 0 5 7 5 0 59 2 0 5 11 1 247 chain 36911 chr1 249250621 + 171912385 171912963 MER4B 649 + 0 618 73643 115 9 8 34 4 46 106 1 2 35 20 15 63 2 1 70 20 24 45 1 0 9 0 1 44 chain 24960 chr1 249250621 + 171924878 171925235 THE1B 368 - 0 368 105006 125 34 44 30 1 0 11 0 1 150 0 1 6 chain 113242 chr1 249250621 + 171925242 171927119 THE1B-int 1605 - 7 1605 33298 202 8 10 41 0 1 111 0 3 197 2 1 331 1 6 47 6 1 32 70 70 25 326 0 63 0 25 148 0 2 80 11 23 63 0 3 113 chain 9408 chr1 249250621 + 171927119 171927308 THE1B 368 - 0 199 163515 112 60 70 17 chain 13808 chr1 249250621 + 171927309 171927478 THE1B 368 - 199 368 145233 169 chain 25004 chr1 249250621 + 171989584 171989887 AluY 311 + 6 308 104755 127 2 0 31 1 0 116 0 2 26 chain 327661 chr1 249250621 + 171993649 171998386 L1P3 4156 + 0 4139 12284 11 0 4 63 3 4 104 44 44 23 1 0 8 4 4 39 4 5 10 2 1 914 1 0 593 0 1 228 21 22 68 286 0 138 4 0 186 16 13 22 325 2 122 0 1 163 1 0 92 1 5 66 0 2 195 1 2 373 0 3 10 0 4 54 0 2 188 0 1 43 1 0 274 9 6 26 chain 51655 chr1 249250621 + 172000000 172000707 L1PA8 5853 + 5152 5853 57862 315 1 2 95 1 0 28 0 1 15 2 0 70 29 27 34 5 3 18 1 0 93 chain 33622 chr1 249250621 + 172005147 172005516 L1PA3long 6157 - 0 369 78207 369 chain 113903 chr1 249250621 + 172005516 172015705 L1PA3long 6157 + 4727 6157 33120 583 0 4 72 0 2 151 8765 0 618 chain 544922 chr1 249250621 + 172024970 172030991 L1PA3long 6157 + 0 6150 2082 152 0 1 623 0 128 171 1 0 2107 0 1 2967 chain 530206 chr1 249250621 + 172043466 172050224 L1PA7 6471 - 10 6471 4167 152 1 0 243 0 1 309 3 0 53 1 0 72 0 8 84 2 1 348 1 0 274 0 1 78 8 7 209 1 0 590 0 1 507 2 1 100 1 5 252 6 10 94 0 9 359 318 0 48 0 1 12 4 1 83 1 0 376 0 5 813 6 5 77 3 5 586 5 4 612 0 1 64 chain 88388 chr1 249250621 + 172066880 172067948 MER11B 1079 - 15 1079 40226 191 0 1 106 6 0 49 0 5 114 12 11 323 3 0 264 chain 29910 chr1 249250621 + 172075984 172076299 AluYb8 318 - 3 318 85067 315 chain 22223 chr1 249250621 + 172086458 172086762 THE1A 353 + 0 302 119249 110 1 0 92 16 15 85 chain 28601 chr1 249250621 + 172126102 172126537 MER1A 529 - 7 498 90724 51 16 17 138 2 16 164 38 79 26 chain 62630 chr1 249250621 + 172136063 172136790 L1PA5 6144 - 0 729 51617 11 1 3 133 2 0 6 0 2 574 chain 364379 chr1 249250621 + 172159157 172164279 L1PA5 6144 - 0 4280 11246 11 1 5 36 0 1 92 11 5 8 0 4 378 3 0 719 0 1 684 0 22 396 865 0 1261 1 2 203 4 3 449 chain 235179 chr1 249250621 + 172166018 172169400 L1PA14 3548 - 108 3458 17019 25 1 0 17 1 0 5 1 0 13 5 3 34 5 1 11 6 5 105 1 0 84 1 0 6 2 0 12 6 4 5 2 0 105 8 4 46 7 5 11 3 1 148 1 0 102 1 0 152 2 1 86 0 1 51 4 5 125 0 1 102 0 2 29 25 14 95 14 15 105 0 5 4 1 0 99 2 0 75 11 12 168 0 1 13 11 15 86 11 11 286 1 0 14 9 10 196 0 1 184 0 5 47 0 1 143 13 10 55 1 0 164 4 2 18 13 11 30 2 1 20 1 0 69 3 0 58 chain 12943 chr1 249250621 + 172183449 172183595 L1PA5 6144 + 6000 6144 148454 37 2 0 107 chain 22673 chr1 249250621 + 172194274 172194565 AluSc 308 - 4 299 117199 29 11 13 109 0 2 142 chain 30826 chr1 249250621 + 172196445 172196879 L1PB3 3668 - 190 625 82820 87 4 3 29 0 3 14 6 0 43 9 12 203 0 2 39 chain 5936 chr1 249250621 + 172200264 172200330 L1PA4 6152 - 5409 5475 183537 66 chain 422768 chr1 249250621 + 172200330 172205134 L1PA4 6152 + 714 6140 9465 21 0 1 82 0 17 400 0 1 338 0 554 102 0 1 147 0 1 786 0 1 197 2 0 985 0 4 141 0 4 366 0 34 407 0 4 286 0 1 140 0 1 404 chain 43611 chr1 249250621 + 172213005 172213478 L1PA2 6032 - 1 474 64671 473 chain 51374 chr1 249250621 + 172213479 172214033 L1PA2 6032 + 5003 5557 58045 554 chain 58246 chr1 249250621 + 172268633 172269596 L1PA16 3655 - 36 967 53836 16 5 0 11 17 0 14 3 0 23 13 15 114 10 11 7 1 0 118 6 4 42 2 0 40 1 0 61 39 0 8 0 39 114 7 3 7 0 4 46 1 0 24 14 13 109 2 0 88 chain 16535 chr1 249250621 + 172269650 172269849 L1PA16 3655 + 2441 2640 136824 199 chain 511712 chr1 249250621 + 172271051 172277162 L1PA6 6164 + 0 6156 6008 177 7 19 4 1 0 587 0 17 28 2 1 707 1 2 57 0 2 733 7 1 210 1 4 14 0 1 305 0 1 311 3 4 344 0 1 173 1 0 118 0 1 132 0 1 413 0 4 277 1 0 217 0 3 434 1 0 9 3 0 69 0 7 56 1 0 44 0 2 341 0 1 124 0 1 53 0 1 145 chain 16920 chr1 249250621 + 172282944 172283134 L1PA7 6471 - 7 197 135795 190 chain 554270 chr1 249250621 + 172283388 172289532 L1PA3long 6157 + 0 6157 913 331 1 0 755 0 3 1674 0 1 878 0 2 247 1 2 1317 0 7 940 chain 14917 chr1 249250621 + 172289546 172289722 L1PA7 6471 + 6086 6262 141583 176 chain 29122 chr1 249250621 + 172341054 172341374 L1PA2 6032 - 0 320 88444 320 chain 33255 chr1 249250621 + 172392219 172393054 L1M1 2793 + 509 1246 78797 13 3 0 12 14 12 7 2 0 7 3 0 8 16 14 8 3 0 9 35 19 17 82 26 39 42 29 11 2 0 4 2 0 21 32 11 26 1 0 28 2 0 9 1 0 10 0 37 9 0 7 11 9 0 76 0 1 13 4 3 57 2 0 110 13 11 62 chain 523252 chr1 249250621 + 172400759 172406868 L1PA6 6164 + 0 6149 4844 266 1 0 101 0 1 199 1 0 837 0 1 184 0 14 730 0 1 287 0 1 418 0 1 64 0 4 80 0 1 89 0 2 413 1 3 194 0 3 6 3 0 465 0 6 308 1 0 381 1 2 250 0 4 217 3 6 406 0 1 203 chain 35728 chr1 249250621 + 172465341 172465803 LTR2 463 + 0 463 75226 360 38 39 64 chain 8103 chr1 249250621 + 172523519 172523620 MER33 330 + 17 118 170473 101 chain 132813 chr1 249250621 + 172540262 172541854 SVA_D 2077 + 98 2077 27458 735 1 0 4 0 1 17 1 0 33 34 66 82 0 2 54 0 1 9 17 370 605 chain 519039 chr1 249250621 + 172560414 172566554 L1PA5 6144 - 0 6144 5264 18 1 0 75 6 0 775 1 5 823 0 3 1166 0 1 92 16 10 85 0 1 390 3 6 171 0 3 19 8 1 60 2 0 242 0 4 263 3 6 498 1 0 258 12 3 206 0 1 204 5 3 547 0 1 70 1 15 119 chain 245203 chr1 249250621 + 172586396 172591141 MER61-int 3695 + 1 3695 16502 21 15 7 21 1 0 15 0 1 127 40 1 54 0 34 44 5 1 5 3 0 64 0 1 7 22 8 60 0 1 53 13 17 89 71 86 81 0 1 53 2 0 173 0 1 96 0 3 151 13 12 51 1 0 55 0 4 35 1 0 357 3 0 309 0 2 29 0 2 22 0 4 22 0 3 65 0 2 169 0 1 73 21 23 74 1 0 17 19 8 20 8 1 14 5 10 100 1 6 88 1 2 6 1 0 37 1 0 23 0 1 31 54 55 43 1109 0 76 1 9 13 4 0 2 6 0 9 0 7 81 1 0 5 0 1 74 3 56 45 9 10 121 0 4 25 1 0 104 chain 6009 chr1 249250621 + 172598452 172598531 MADE1 96 + 0 96 185144 29 0 16 19 0 1 31 chain 8201 chr1 249250621 + 172602265 172602359 MER83B 357 - 263 357 169949 94 chain 39722 chr1 249250621 + 172645623 172646171 MER41A 554 + 0 553 69727 113 13 4 96 39 53 287 chain 435142 chr1 249250621 + 172657688 172663195 HERVL-int 5654 - 0 5530 9192 150 0 3 233 0 1 42 0 2 154 0 1 7 0 5 45 3 0 486 0 1 222 164 164 135 8 4 443 0 1 54 49 49 85 1 0 692 12 18 16 0 2 4 1 0 620 2 1 537 0 5 46 3 4 212 0 1 293 3 1 22 0 1 21 0 5 742 chain 22978 chr1 249250621 + 172663905 172664218 MLT2A1 477 - 159 477 115728 144 14 18 13 0 1 142 chain 19784 chr1 249250621 + 172697937 172698238 THE1B 368 - 62 368 127864 63 2 1 12 1 0 16 0 4 11 1 0 4 3 7 19 1 0 48 15 16 105 chain 3098 chr1 249250621 + 172707091 172707125 Tigger1 2417 - 226 260 222960 34 chain 3180 chr1 249250621 + 172745757 172745792 MADE1 96 - 61 96 221345 35 chain 4749 chr1 249250621 + 172765028 172765085 MER65A 464 + 183 240 197933 57 chain 3430 chr1 249250621 + 172768168 172768206 LTR12_ 688 + 0 38 216570 38 chain 230030 chr1 249250621 + 172768206 172771154 HERV9-int 5642 + 246 4824 17304 370 6 1 178 1 0 308 163 0 31 1 0 149 0 2 501 0 3 887 0 1 14 2 0 149 0 1795 180 0 1 8 chain 3993 chr1 249250621 + 172769170 172769215 HERV9-int 5642 + 1044 1089 207495 45 chain 49382 chr1 249250621 + 172772804 172773560 LTR12 884 + 0 884 59461 55 0 107 47 1 0 147 0 22 270 0 1 15 134 0 18 0 133 69 chain 137464 chr1 249250621 + 172775618 172777143 L1PA2 6032 - 1 1526 26566 1525 chain 17681 chr1 249250621 + 172784362 172784664 THE1C 375 - 0 301 133744 26 1 0 152 24 22 32 34 36 33 chain 81023 chr1 249250621 + 172798347 172799297 L1PA7 6471 - 3 956 43183 211 0 4 632 1 0 106 chain 51165 chr1 249250621 + 172820559 172821190 PABL_A 660 - 3 659 58207 147 0 2 361 1 0 7 0 1 15 2 1 33 0 9 19 1 0 27 2 18 16 chain 162773 chr1 249250621 + 172821515 172823491 L1PA8 5853 - 0 1960 22969 83 11 10 16 1 0 54 10 0 11 2 1 70 2 0 44 1 0 555 0 2 14 0 3 770 9 5 293 1 0 29 chain 10265 chr1 249250621 + 172843532 172843651 L1PA5 6144 - 3 122 159303 119 chain 164600 chr1 249250621 + 172846775 172848612 L1PA4 6152 - 0 1836 22728 168 8 8 675 1 0 985 chain 6166 chr1 249250621 + 172877355 172877447 L1PA13 3608 + 3398 3485 183830 45 2 0 5 2 0 20 1 0 17 chain 3034 chr1 249250621 + 172885597 172885799 MARNA 422 + 80 294 224311 11 4 6 20 136 146 31 chain 99735 chr1 249250621 + 172891176 172892308 L1PA3long 6157 + 4946 6079 36845 33 0 1 1099 chain 15218 chr1 249250621 + 172900009 172900267 L1PB1 5432 + 5162 5398 140722 6 2 0 51 1 0 17 1 0 45 1 0 15 13 1 8 0 1 20 1 0 6 1 0 16 2 0 22 1 0 22 1 0 6 chain 22732 chr1 249250621 + 172902667 172902962 AluY 311 + 0 300 116907 123 3 0 52 4 12 113 chain 131022 chr1 249250621 + 172930368 172932063 L1PA8 5853 - 0 1703 27856 92 2 1 16 7 6 48 1 0 11 2 1 68 2 0 46 1 0 210 3 4 12 0 16 257 0 1 7 1 0 55 27 0 10 4 25 553 0 2 42 0 1 162 0 1 56 chain 24975 chr1 249250621 + 172943885 172944269 L1PA8 5853 - 1 354 104935 91 6 5 15 2 1 38 0 4 8 29 0 11 1 0 71 2 0 44 1 0 65 chain 554829 chr1 249250621 + 172950419 172956446 L1PA2 6032 - 4 6031 844 1073 0 2 2941 0 3 983 4 0 473 1 0 552 chain 85383 chr1 249250621 + 172956473 172957398 L1PA3long 6157 - 1518 2443 41320 925 chain 138338 chr1 249250621 + 172957398 172958939 L1PA3long 6157 + 4613 6157 26427 1529 0 3 12 chain 17760 chr1 249250621 + 172964873 172965235 THE1B 368 + 0 368 133542 81 40 42 51 64 69 59 11 10 56 chain 122794 chr1 249250621 + 172965235 172966815 THE1B-int 1605 + 0 1600 30120 413 0 1 19 0 25 230 34 22 80 2 8 344 0 2 29 6 5 385 1 0 37 chain 43409 chr1 249250621 + 172972626 172973367 L1M1 2793 - 988 1982 64922 18 10 16 28 8 12 9 0 3 48 5 0 19 0 9 21 2 6 37 11 15 196 1 0 94 3 0 5 5 0 14 8 7 50 1 245 32 31 28 54 1 0 9 2 0 19 chain 48478 chr1 249250621 + 172999416 173000000 L1P3 4156 + 1066 1654 60130 28 1 0 4 0 1 99 9 13 443 chain 385906 chr1 249250621 + 173000001 173005029 L1PA7 6471 + 1658 6348 10577 1603 14 0 3 19 0 239 1 0 73 0 1 3 307 0 52 0 1 196 2 0 5 3 5 1157 12 1 624 1 0 66 1 2 15 3 16 423 2 1 204 chain 398405 chr1 249250621 + 173038260 173042777 L1PA4 6152 - 12 4538 10159 133 5 6 103 1 0 52 0 1 1185 0 1 72 0 3 117 8 0 553 0 13 1959 1 0 328 chain 216662 chr1 249250621 + 173043097 173045579 L1P1 4361 + 2 2485 18074 17 0 1 2465 chain 24394 chr1 249250621 + 173045579 173045883 L1PA4 6152 + 5844 6141 108111 152 7 0 145 chain 43538 chr1 249250621 + 173059329 173060062 L1PA14 3548 - 123 804 64753 10 1 0 19 1 0 3 1 0 15 4 2 33 5 1 11 5 4 108 1 0 70 6 18 13 5 1 112 9 5 47 2 0 8 9 7 9 41 0 185 chain 221039 chr1 249250621 + 173098446 173101090 L1PA7 6471 - 16 2676 17815 132 0 15 177 6 4 154 0 1 355 0 3 17 2 0 146 0 3 179 0 6 544 0 2 283 1 2 215 0 2 178 0 1 30 15 0 178 0 1 32 chain 213447 chr1 249250621 + 173112264 173115322 L1PA14 3548 - 95 3302 18257 39 1 0 16 8 6 14 4 2 35 5 1 8 1 0 108 4 3 79 6 5 6 2 0 17 4 0 109 2 0 4 2 0 48 2 0 8 9 7 82 17 20 46 6 7 19 0 4 224 1 0 141 12 14 94 0 1 226 0 12 77 4 0 60 1 2 19 1 0 58 0 157 129 1 0 5 0 3 15 4 8 30 8 0 8 18 26 32 9 10 216 2 0 7 0 1 13 1 0 6 0 1 47 1 0 95 0 1 285 3 0 123 1 2 313 4 2 29 2 0 22 chain 537872 chr1 249250621 + 173122883 173129044 L1PA4 6152 + 15 6148 3172 566 0 4 253 17 0 96 0 3 632 6 9 1119 0 3 56 1 0 326 23 1 1843 3 4 567 0 1 638 3 0 12 chain 53376 chr1 249250621 + 173133845 173134501 PABL_A 660 + 0 660 56785 84 2 1 238 0 5 332 chain 19805 chr1 249250621 + 173188561 173188806 L1PB1 5432 + 4835 5103 127799 47 0 23 198 chain 475342 chr1 249250621 + 173196582 173204089 L1PA5 6144 + 0 6138 7874 143 14 0 466 0 9 7 1 0 452 2 1 140 1 0 504 7 5 1046 0 4 383 1 3 7 1 0 178 16 0 798 38 21 237 1867 534 635 0 3 257 0 1 270 9 7 27 chain 56242 chr1 249250621 + 173201408 173202066 L1P1 4361 - 20 675 54999 12 2 1 23 1 0 157 1 0 462 chain 48393 chr1 249250621 + 173202081 173202678 L1P2 5180 + 1096 1702 60188 73 4 13 61 1 0 25 0 1 433 chain 63101 chr1 249250621 + 173206402 173207411 L1PREC2 3366 + 1915 3051 51401 107 0 35 30 0 127 538 2 0 37 19 18 43 1 0 4 3 0 13 52 39 15 3 1 24 42 25 24 10 15 37 1 0 4 chain 293355 chr1 249250621 + 173228174 173232498 L1PA10 4194 + 175 4160 13803 13 5 0 13 3 0 6 2 0 9 42 34 20 3 1 15 1 0 8 37 12 7 1 0 21 3 1 11 22 24 10 1 0 15 7 0 8 1 0 70 9 11 243 1 2 219 10 14 430 3 0 5 1 4 331 12 13 21 0 2 506 0 11 123 0 1 554 2 0 183 0 1 467 0 1 67 0 6 10 313 0 72 4 3 106 8 13 102 0 1 99 25 23 33 1 0 10 chain 32167 chr1 249250621 + 173240214 173240587 L1PA6 6164 - 930 1300 80587 136 3 0 234 chain 73900 chr1 249250621 + 173240598 173241484 L1PA6 6164 + 5266 6156 46564 564 3 4 178 1 0 4 9 13 127 chain 45311 chr1 249250621 + 173272136 173272700 LTR19B 566 - 0 566 62706 53 0 1 34 1 0 44 0 2 326 6 1 13 1 6 86 chain 240258 chr1 249250621 + 173288402 173291538 L1PA8 5853 + 105 5760 16756 197 18 6 318 0 4 201 0 2529 25 1 0 3 1 0 398 0 5 338 7 8 203 1 0 252 0 1 391 0 4 21 0 4 57 23 26 95 2 4 299 1 0 70 1 0 43 7 5 36 0 2 8 46 30 41 13 12 19 chain 542048 chr1 249250621 + 173291540 173297653 L1PA4 6152 + 0 6151 2493 72 0 1 940 0 23 207 0 1 569 6 5 1200 1 0 1610 0 1 299 0 14 1209 chain 8501 chr1 249250621 + 173297727 173297820 L1PA8 5853 + 5760 5853 168283 93 chain 28711 chr1 249250621 + 173309995 173310370 THE1C 375 + 0 375 90288 184 13 12 119 0 1 59 chain 21542 chr1 249250621 + 173317260 173317625 THE1B 368 + 0 368 121997 111 5 6 26 2 0 32 64 68 125 chain 9423 chr1 249250621 + 173320722 173320833 L1PREC2 3366 + 1000 1111 163440 111 chain 22611 chr1 249250621 + 173335104 173335475 L1MA2 4263 + 3749 4104 117533 57 3 0 91 8 9 49 12 10 41 0 1 39 31 18 40 chain 38829 chr1 249250621 + 173337001 173337529 LTR12F 595 + 0 595 70977 103 0 1 41 2 0 23 1 67 88 0 2 67 4 3 168 13 14 18 chain 468643 chr1 249250621 + 173337561 173343266 HERV9-int 5642 + 12 5642 8088 105 7 8 572 22 0 19 6 0 132 3 1 252 5 4 9 1 0 20 1 0 174 1 0 4 0 1 90 1 0 18 0 1 156 1 0 7 1 2 760 12 4 678 0 1 2200 1 0 227 6 4 36 3 1 27 1 0 60 1 0 13 28 5 20 8 2 17 chain 37425 chr1 249250621 + 173344561 173345092 LTR12F 595 + 0 571 72933 67 0 77 15 36 0 18 17 8 21 0 9 177 1 0 179 chain 23330 chr1 249250621 + 173345310 173345610 L1PA7 6471 + 6034 6342 114028 68 1 9 196 2 1 5 0 1 28 chain 53027 chr1 249250621 + 173345610 173346311 LTR12_ 688 + 0 688 57001 130 32 16 332 7 11 24 1 0 175 chain 244473 chr1 249250621 + 173346337 173349561 HERV9-int 5642 + 5 3068 16532 175 20 53 282 3 11 70 21 15 42 0 33 110 2 1 298 160 0 11 3 0 31 1 2 448 16 1 454 51 0 1026 chain 4093 chr1 249250621 + 173348484 173348527 HERV9-int 5642 + 1644 1687 206045 43 chain 54294 chr1 249250621 + 173350893 173351590 LTR12_ 688 + 0 688 56165 109 0 1 53 21 4 342 8 7 36 0 8 128 chain 10955 chr1 249250621 + 173351590 173351711 L1PA7 6471 + 6338 6459 156378 121 chain 38566 chr1 249250621 + 173415612 173416150 MLT2A2 560 + 0 554 71346 168 37 40 146 0 2 43 3 14 141 chain 37020 chr1 249250621 + 173417555 173418004 LTR7 482 - 0 482 73493 49 13 15 128 0 31 259 chain 104507 chr1 249250621 + 173426044 173427262 L1PA6 6164 + 4946 6162 35618 372 0 4 503 6 1 20 2 1 315 chain 277157 chr1 249250621 + 173431621 173435907 L1PA11 4918 + 750 4629 14800 158 1 5 138 0 4 17 15 21 19 0 4 86 7 6 152 0 3 148 1 5 219 0 2 76 4 1 175 0 1 144 0 1 112 1 0 162 1 0 84 0 1 45 428 1 82 7 0 4 0 1 6 1 0 22 0 1 63 1 0 5 1 2 130 0 1 27 6 5 84 0 1 173 1 6 165 0 2 76 0 12 77 0 3 178 1 0 284 0 1 174 9 24 120 0 1 58 5 0 32 1 2 27 8 7 76 2 0 11 0 1 4 1 0 19 134 104 18 chain 122102 chr1 249250621 + 173439308 173440868 THE1B-int 1605 + 13 1600 30349 12 3 0 5 3 6 392 3 28 303 4 0 537 0 1 127 0 4 134 0 1 37 chain 45551 chr1 249250621 + 173462227 173462739 MER9a3 513 + 0 513 62456 170 0 1 342 chain 36765 chr1 249250621 + 173462739 173463230 MER41A 554 + 46 553 73853 131 8 12 133 11 22 29 0 1 179 chain 40654 chr1 249250621 + 173468990 173469520 MER41A 554 + 0 554 68366 108 4 16 63 0 10 270 6 7 60 1 2 18 chain 392643 chr1 249250621 + 173479507 173484987 L1PA8 5853 - 38 5190 10372 53 3 2 19 2 1 30 28 26 5 1 0 71 2 0 36 0 3 5 11 7 366 331 0 80 0 3 44 1 0 57 0 7 141 0 5 983 0 1 124 0 1 104 0 1 53 0 1 108 1 0 87 22 9 64 13 13 249 0 5 77 0 2 10 0 1 23 0 4 26 2 1 354 9 3 266 6 10 201 1 6 46 5 0 57 19 33 142 13 4 41 1 0 470 7 1 47 0 1 86 1 0 476 chain 357367 chr1 249250621 + 173510034 173514153 L1PA6 6164 + 2038 6160 11422 296 2 0 840 4 5 10 0 1 848 0 1 229 0 1 93 0 4 673 1 0 276 1 0 387 5 6 446 2 0 6 chain 10002 chr1 249250621 + 173538322 173538472 L1M1 2793 - 1530 1676 160570 15 6 2 66 1 0 39 6 7 17 chain 41779 chr1 249250621 + 173555638 173556128 L1PA8A 6298 + 5800 6291 66929 387 1 2 102 chain 27442 chr1 249250621 + 173562676 173563033 L1PREC2 3366 + 236 587 94842 11 1 0 10 3 1 27 1 0 120 1 0 65 2 1 116 chain 42562 chr1 249250621 + 173572419 173572924 HERV1_LTRa 508 + 0 502 65946 42 1 0 50 2 4 373 4 0 33 chain 139364 chr1 249250621 + 173581711 173583401 SVA_D 2077 + 16 2056 26238 539 0 40 166 40 0 151 0 137 42 1 2 4 0 1 5 0 78 38 0 1 11 0 78 37 0 1 7 2 52 32 0 1 15 0 1 8 0 1 18 1 0 259 11 12 303 chain 21431 chr1 249250621 + 173584287 173584543 AluSc5 308 + 0 300 122405 20 1 45 235 chain 347042 chr1 249250621 + 173587264 173592746 L1PA11 4918 + 7 4629 11693 7 1 0 25 5 3 36 4 1 36 16 13 30 6 11 11 1 0 6 0 3 24 2 0 5 2 1 219 0 1 10 0 5 14 1 0 371 0 1 284 1 0 225 1 0 68 315 0 361 1 4 33 3 0 302 204 0 79 1 0 18 1 0 27 2 0 52 1 2 52 10 14 17 0 1 166 1 0 525 6 5 5 0 1 486 11 12 109 1 2 6 1 0 548 0 8 76 5 0 62 319 7 77 2 0 15 1 0 11 141 111 18 chain 33075 chr1 249250621 + 173599993 173600415 L1M1 2793 + 2215 2670 79087 24 0 32 170 1 0 123 0 1 44 0 1 60 chain 518511 chr1 249250621 + 173619255 173625377 L1PA6 6164 - 8 6164 5330 234 0 4 319 7 13 270 0 4 598 2 0 819 1 0 107 0 1 1386 1 5 62 10 0 162 0 9 716 0 1 353 0 3 45 0 1 191 0 1 172 0 13 75 0 1 126 1 0 465 chain 14161 chr1 249250621 + 173635518 173635754 MER2 342 - 6 240 144008 20 1 0 4 24 18 73 17 22 97 chain 14864 chr1 249250621 + 173641040 173641245 MER50 708 + 472 686 141737 22 1 3 12 1 0 19 0 1 109 0 4 12 0 3 29 chain 32186 chr1 249250621 + 173643519 173643989 MER4A1 472 - 0 472 80553 128 19 0 98 16 25 4 1 0 43 10 21 136 1 3 14 chain 198676 chr1 249250621 + 173643997 173647045 MER4-int 2692 - 5 2691 19305 28 8 9 320 10 8 37 1 2 12 1 0 43 317 0 331 0 2 112 2 1 180 0 5 114 1 6 20 0 5 208 0 1 87 0 4 31 0 1 66 66 0 135 0 1 26 3 1 173 20 17 15 0 2 74 0 3 59 7 16 13 15 13 388 13 10 9 2 0 63 2 0 25 1 0 10 chain 204581 chr1 249250621 + 173647227 173649788 L1PA6 6164 + 3519 6162 18879 105 2 5 26 0 5 439 16 24 234 0 8 132 0 2 517 0 1 15 0 1 260 0 4 19 1 0 14 7 11 412 1 0 4 1 2 252 4 51 100 chain 36288 chr1 249250621 + 173649789 173650269 L1PA7 6471 + 5992 6459 74517 93 0 1 51 1 0 58 0 4 122 18 1 137 chain 8169 chr1 249250621 + 173652792 173652904 MER4A1 472 - 0 114 170125 67 7 9 38 chain 35843 chr1 249250621 + 173652910 173653441 LTR10F 562 - 0 562 75073 154 0 1 126 9 15 12 0 24 61 56 56 113 chain 207638 chr1 249250621 + 173653507 173656516 HERVIP10FH-int 2884 - 13 2735 18667 16 2 0 9 209 22 35 9 3 15 1 0 16 9 8 43 1 0 65 1 0 69 0 3 293 1 0 20 5 4 146 0 1 53 1 0 209 0 5 25 16 12 16 5 4 15 1 0 3 10 0 39 22 10 43 20 3 14 7 1 12 26 12 12 5 2 18 5 0 126 5 0 63 1 0 7 1 0 11 3 0 8 4 1 172 6 1 273 0 2 308 1 0 103 0 5 116 7 0 191 5 3 56 chain 32455 chr1 249250621 + 173660555 173661388 LTR10F 562 - 8 562 80103 83 310 0 190 3 68 19 35 0 56 1 29 27 28 1 81 chain 23392 chr1 249250621 + 173660652 173660947 AluY 311 + 10 304 113687 133 3 0 7 6 8 146 chain 27052 chr1 249250621 + 173661388 173661721 MER4A1 472 - 116 472 96108 104 5 26 196 1 0 8 0 1 4 0 2 15 chain 31330 chr1 249250621 + 173664994 173665411 MER11C 1089 + 638 1076 81932 132 11 30 89 0 1 153 1 2 31 chain 37220 chr1 249250621 + 173665423 173665936 L1PA16 3655 - 907 1425 73209 74 1 0 19 0 5 158 22 13 8 0 9 78 0 1 153 chain 425149 chr1 249250621 + 173665944 173670956 L1PA6 6164 + 1136 6157 9415 325 1 2 78 1 2 716 5 7 8 2 0 50 2 1 74 0 4 50 9 5 147 3 0 237 1 3 378 3 2 710 0 2 1377 1 5 776 0 4 58 chain 34937 chr1 249250621 + 173680337 173680783 MER4A1 472 - 0 472 76282 67 7 9 150 7 28 56 0 1 131 1 0 8 0 1 4 0 2 15 chain 27354 chr1 249250621 + 173687961 173688260 AluYk11 308 + 0 298 95102 123 1 0 175 chain 530616 chr1 249250621 + 173694903 173701009 L1PA4 6152 + 4 6152 4122 563 12 9 476 8 9 211 1 2 175 11 8 859 0 4 66 0 4 445 1 0 57 0 2 147 0 15 209 0 2 122 0 3 546 0 1 62 0 4 1293 0 4 690 0 3 146 0 5 6 chain 204360 chr1 249250621 + 173704757 173709864 L1PB1 5432 - 6 3290 18900 4 1 0 18 1 0 4 9 8 22 1 0 15 34 29 14 9 0 16 3 0 16 1 0 44 1 0 15 2 1 51 363 27 4 1 0 21 18 14 132 6 7 61 3 1 85 302 3 16 2 1 54 0 7 76 5 7 21 4 0 157 0 4 42 0 1 293 0 1 105 10 19 113 16 17 91 28 39 14 7 0 237 284 0 132 2 3 475 869 271 98 1 2 18 3 0 12 1 2 26 306 4 95 1 2 88 4 5 56 1 0 45 0 1 22 chain 7848 chr1 249250621 + 173717800 173717887 L1PA3long 6157 + 6060 6147 172025 87 chain 395579 chr1 249250621 + 173728623 173733995 L1PB1 5432 + 62 5420 10253 389 1 2 92 1 2 64 0 4 167 0 1 254 0 2 190 5 6 160 1 0 7 2 0 5 57 42 95 0 4 53 4 9 697 2 0 70 1 11 51 0 8 48 12 7 83 0 2 242 0 1 12 2 0 111 11 1 359 0 5 38 0 3 35 10 9 300 4 3 24 1 2 31 12 4 124 0 1 70 1 0 489 15 14 98 0 2 9 0 4 30 9 14 105 0 1 375 1 0 8 4 3 20 2 0 13 16 11 9 2 0 53 2 1 16 2 0 44 1 0 15 3 0 7 15 6 18 25 28 15 1 0 21 1 0 13 1 0 16 chain 2811 chr1 249250621 + 173737814 173737844 L1MB2 1706 + 1639 1669 228595 30 chain 16553 chr1 249250621 + 173747209 173747432 L1PA6 6164 - 2 222 136785 64 11 1 12 0 4 94 0 3 42 chain 25561 chr1 249250621 + 173757575 173757876 AluSp 311 - 1 300 101926 178 3 0 94 0 1 26 chain 14875 chr1 249250621 + 173762052 173762284 Tigger3a 397 + 43 326 141701 32 17 66 51 0 6 23 9 5 100 chain 526968 chr1 249250621 + 173780833 173787299 L1PA6 6164 + 0 6160 4506 283 11 10 105 16 15 379 1 18 276 0 3 1200 0 1 4 2 0 39 0 1 118 12 6 728 1 0 1179 0 4 805 323 3 587 0 1 389 2 0 6 chain 110027 chr1 249250621 + 173850094 173851981 L1PA5 6144 - 0 1264 34209 400 0 1 57 1 0 355 307 0 147 316 0 304 chain 3389 chr1 249250621 + 173868810 173868847 MER5B 177 - 140 177 217299 37 chain 25432 chr1 249250621 + 173877356 173877650 AluSq10 312 + 11 305 102538 294 chain 26359 chr1 249250621 + 173893775 173894075 AluYf4 310 - 0 300 98579 300 chain 12898 chr1 249250621 + 173913555 173913704 L1PA5 6144 + 5983 6131 148636 96 1 0 52 chain 23421 chr1 249250621 + 173925549 173925828 AluSp 311 + 34 311 113535 254 2 0 23 chain 10496 chr1 249250621 + 173956546 173956956 L1MC3 1789 - 494 848 158263 33 109 83 85 143 113 40 chain 30032 chr1 249250621 + 173958848 173959163 AluYb8 318 - 3 318 84715 315 chain 22417 chr1 249250621 + 173984506 173984791 AluSg7 307 - 14 296 118398 18 1 2 61 3 0 86 1 0 115 chain 26421 chr1 249250621 + 173998791 173999080 L1PA3long 6157 + 5860 6149 98334 289 chain 103326 chr1 249250621 + 174024670 174026069 LTR12C 1709 - 0 1709 35918 82 1 0 112 61 60 52 1 0 175 11 4 100 9 168 102 0 118 244 1 0 13 3 6 5 2 0 7 6 0 80 0 43 192 0 6 140 chain 24462 chr1 249250621 + 174033888 174034208 L1MA3 4352 + 3123 3456 107748 187 0 10 66 0 1 9 5 7 53 chain 3653 chr1 249250621 + 174047018 174047076 MER51A 677 + 290 420 212768 17 1 73 40 chain 89529 chr1 249250621 + 174050276 174051474 L1PBa 3878 + 1051 2236 39799 218 2 1 161 1 0 161 35 31 270 29 22 321 chain 74629 chr1 249250621 + 174057559 174058715 L1PA11 4918 - 289 1401 46195 18 63 44 13 1 0 15 13 9 10 42 32 16 2 0 56 3 1 20 1 0 68 3 0 110 2 5 103 14 15 148 3 0 282 1 0 138 2 0 9 chain 6663 chr1 249250621 + 174071937 174072018 Tigger1 2417 + 205 286 179970 81 chain 8873 chr1 249250621 + 174074497 174074622 MER50 708 - 22 146 166268 100 12 11 13 chain 2803 chr1 249250621 + 174076042 174076182 L2a 937 + 263 399 228686 7 10 0 25 80 86 18 chain 25255 chr1 249250621 + 174078521 174078879 THE1B 368 + 0 368 103454 44 0 15 113 1 0 20 2 0 16 16 15 71 1 0 74 chain 43537 chr1 249250621 + 174091349 174092459 L1MA3 4352 + 3584 4258 64755 60 3 2 88 6 2 353 513 83 8 1 0 78 chain 22717 chr1 249250621 + 174091944 174092319 MSTA 426 - 31 426 116997 72 17 20 46 23 21 33 2 1 43 0 6 17 1 2 4 1 0 26 3 4 74 0 13 13 chain 8652 chr1 249250621 + 174094513 174094613 MSTA 426 + 0 100 167461 100 chain 489870 chr1 249250621 + 174094656 174100922 L1PA8A 6298 - 8 6238 7373 16 2 0 87 3 4 690 1 4 214 0 1 919 1 0 650 7 0 77 8 9 184 13 17 247 3 0 69 0 1 339 0 4 194 2 1 62 9 6 199 0 3 93 4 5 111 0 1 77 2 1 101 2 1 141 0 3 226 1 2 396 19 32 65 2 0 56 0 4 188 0 1 14 1 0 71 0 2 42 0 1 148 1 0 76 7 5 8 1 0 14 2 0 78 8 0 22 11 9 31 16 9 16 1 0 8 2 1 5 1 0 8 1 0 13 1 0 6 9 7 6 2 0 12 1 0 7 26 23 13 24 15 19 8 5 18 6 0 7 2 0 3 3 0 7 chain 457713 chr1 249250621 + 174112712 174118561 L1PA7 6471 + 0 6144 8482 230 14 29 100 13 14 30 13 0 188 12 13 378 0 6 1303 0 1 278 0 14 22 11 615 326 1 5 658 0 2 49 1 0 8 1 0 234 0 1 170 0 2 279 0 1 574 344 0 91 0 3 86 2 0 328 0 1 105 chain 23348 chr1 249250621 + 174124242 174124548 AluSq 315 + 0 302 113931 31 4 0 94 2 0 8 0 2 167 chain 13261 chr1 249250621 + 174132016 174132158 L1PA2 6032 + 5807 5949 147242 142 chain 106551 chr1 249250621 + 174146233 174147514 L1PA8 5853 - 611 1905 35105 13 0 1 198 7 8 12 2 0 745 0 1 180 0 9 24 1 4 99 chain 46670 chr1 249250621 + 174147527 174148136 L1PA8 5853 + 5251 5853 61479 313 1 0 45 2 0 66 15 13 52 2 1 19 1 0 93 chain 25817 chr1 249250621 + 174155003 174155300 AluSp 311 + 4 300 100799 174 1 0 122 chain 4793 chr1 249250621 + 174169296 174169369 U13_ 108 - 33 108 197433 25 8 10 40 chain 140941 chr1 249250621 + 174170795 174173076 L1PA4 6152 - 0 1847 25991 6 0 5 337 0 1 965 455 0 17 0 2 6 6 4 125 20 19 52 18 25 18 6 6 16 14 22 59 46 47 115 chain 3256 chr1 249250621 + 174181438 174181505 MADE1 96 - 0 96 219855 23 20 49 24 chain 28728 chr1 249250621 + 174198811 174199124 L1PA4 6152 - 406 719 90216 313 chain 36839 chr1 249250621 + 174199124 174199533 L1PA4 6152 + 5729 6139 73748 88 0 1 321 chain 557987 chr1 249250621 + 174202404 174208428 L1PA2 6032 - 2 6028 500 3882 1 0 1126 0 2 193 0 1 822 chain 65432 chr1 249250621 + 174223475 174224281 L1PA8 5853 - 3 803 50366 73 18 17 18 1 0 63 1 0 71 2 0 46 1 0 512 chain 60717 chr1 249250621 + 174249912 174250672 LTR12 884 - 0 869 52461 506 26 0 150 0 134 58 0 1 20 chain 211402 chr1 249250621 + 174266685 174269768 MER61-int 3695 - 0 2864 18405 97 1 0 10 0 4 184 0 24 221 42 41 220 0 1 30 1 0 80 0 3 15 1 0 149 3 2 116 0 16 61 0 1 230 0 5 39 0 4 352 5 6 35 7 36 89 4 9 489 0 8 169 1 0 19 0 1 24 328 13 61 chain 69915 chr1 249250621 + 174274919 174275703 L1PA5 6144 - 14 799 48426 174 0 1 610 chain 81564 chr1 249250621 + 174289658 174290722 MER11B 1079 + 0 1064 42948 220 0 5 312 0 1 4 6 5 194 10 0 29 0 2 45 8 9 19 0 1 33 0 1 150 0 1 18 2 1 14 chain 25498 chr1 249250621 + 174300817 174301105 L1PA4 6152 - 1 290 102229 147 0 1 141 chain 3605 chr1 249250621 + 174317494 174317569 L1M1 2793 - 687 761 213558 38 21 20 16 chain 161355 chr1 249250621 + 174317618 174320207 SVA_F 1814 - 26 1804 23140 527 269 0 48 51 0 186 149 0 65 356 15 10 0 1 48 2 0 45 6 6 827 chain 16256 chr1 249250621 + 174318145 174318410 SVA_F 1814 - 590 852 75102 37 4 0 13 1 0 54 0 4 111 1 0 8 1 0 35 chain 2337 chr1 249250621 + 174318462 174318488 SVA_F 1814 - 777 803 142417 26 chain 3167 chr1 249250621 + 174318717 174318801 SVA_F 1814 - 804 902 131146 9 1 0 38 1 16 35 chain 3173 chr1 249250621 + 174318801 174318848 SVA_F 1814 - 613 660 80868 47 chain 12759 chr1 249250621 + 174318913 174319102 SVA_F 1814 - 725 926 80868 123 4 19 10 2 0 39 1 0 10 chain 6224 chr1 249250621 + 174319102 174319169 SVA_F 1814 - 686 753 137586 67 chain 1546 chr1 249250621 + 174319169 174319210 SVA_F 1814 - 1153 1194 131146 41 chain 5295 chr1 249250621 + 174319210 174319267 SVA_F 1814 - 794 851 137586 57 chain 58378 chr1 249250621 + 174324113 174324762 L1PA4 6152 + 5503 6151 53760 631 1 0 17 chain 29663 chr1 249250621 + 174333381 174333691 AluYa5 310 - 0 310 86008 310 chain 560519 chr1 249250621 + 174346929 174352953 L1PA2 6032 - 7 6031 327 6024 chain 93928 chr1 249250621 + 174378275 174379413 MER11A 1151 + 7 1151 38370 288 1 0 6 1 0 25 0 2 52 0 1 292 6 9 123 2 1 56 3 0 179 0 3 43 1 0 22 4 8 34 chain 4086 chr1 249250621 + 174386209 174386255 MADE1 96 + 49 95 206129 46 chain 97344 chr1 249250621 + 174404794 174405876 L1PA4 6152 - 0 1083 37446 630 0 1 452 chain 127937 chr1 249250621 + 174405876 174407312 L1P1 4361 + 650 2085 28587 73 1 0 1362 chain 26086 chr1 249250621 + 174413450 174413810 L1MA4 2864 - 2371 2733 99684 19 0 5 59 8 9 10 4 0 260 chain 73967 chr1 249250621 + 174432004 174432809 L1PA3long 6157 + 5351 6157 46533 656 0 1 149 chain 23708 chr1 249250621 + 174443758 174444038 AluSc 308 - 28 308 111990 280 chain 9874 chr1 249250621 + 174450918 174451025 L1PA2 6032 + 5925 6032 161208 107 chain 27026 chr1 249250621 + 174457908 174458232 L1PA5 6144 - 3 325 96197 195 2 0 127 chain 64205 chr1 249250621 + 174458240 174458962 L1PA5 6144 + 5057 5780 50915 711 1 0 4 0 2 6 chain 17640 chr1 249250621 + 174472861 174473095 L1MA8 2339 + 523 755 133875 55 2 0 177 chain 3690 chr1 249250621 + 174475421 174475535 MER58B 340 + 209 324 212091 16 58 59 40 chain 27685 chr1 249250621 + 174488373 174488734 MLT2A1 477 - 78 446 94102 9 6 0 5 0 2 11 0 7 42 1 0 150 0 4 26 0 1 111 chain 520100 chr1 249250621 + 174508435 174514856 L1PA5 6144 - 3 6144 5148 1790 0 4 399 302 0 2521 1 0 256 9 0 755 13 14 216 20 33 17 2 16 120 chain 14048 chr1 249250621 + 174529853 174530037 L1PA16 3655 - 57 236 144385 5 1 0 16 3 0 142 1 0 16 chain 160807 chr1 249250621 + 174530214 174532152 L1PA7 6471 + 4518 6470 23226 144 0 8 79 0 1 445 0 4 5 1 0 8 0 1 279 0 2 8 2 0 115 1 4 55 1 0 34 1 0 52 1 0 331 0 1 376 chain 74910 chr1 249250621 + 174544849 174545765 MER11D 897 - 0 897 46055 287 1 24 321 42 0 265 chain 45235 chr1 249250621 + 174549390 174549916 L1PA4 6152 + 5612 6139 62786 284 3 4 239 chain 32746 chr1 249250621 + 174556061 174556414 L1PA3long 6157 - 173 526 79621 353 chain 14946 chr1 249250621 + 174556423 174556590 L1PA3long 6157 + 5989 6156 141483 167 chain 565323 chr1 249250621 + 174559490 174565517 L1HS 6032 - 3 6032 194 5873 0 2 154 chain 26703 chr1 249250621 + 174569095 174569448 THE1A 353 - 0 352 97312 220 3 4 19 3 2 41 4 3 63 chain 123086 chr1 249250621 + 174569454 174571307 THE1A-int 1579 - 5 1579 30012 199 0 1 363 31 29 54 0 1 241 5 4 180 281 0 21 7 10 471 chain 20984 chr1 249250621 + 174570541 174570790 L1PA6 6164 + 5912 6159 123976 242 2 0 5 chain 550194 chr1 249250621 + 174579195 174585366 L1PA3long 6157 - 0 6157 1422 445 2 3 1466 0 1 2414 20 0 867 0 3 847 1 2 73 1 2 28 1 0 6 chain 438743 chr1 249250621 + 174586872 174591990 L1PA4 6152 + 0 6139 9090 16 0 1 65 0 1 74 0 76 860 0 2 511 0 1 670 0 1 151 0 4 51 21 22 934 0 933 470 0 1 1295 chain 284824 chr1 249250621 + 174599066 174602156 L1HS 6032 - 2038 5131 14364 224 0 2 2167 0 1 699 chain 186374 chr1 249250621 + 174602156 174604182 L1PA2 6032 + 4002 6030 20366 1187 0 1 320 0 1 519 chain 60201 chr1 249250621 + 174607534 174608187 L1PA2 6032 + 5379 6032 52727 653 chain 361471 chr1 249250621 + 174614388 174618755 L1PA7 6471 - 12 4421 11329 87 1 0 158 0 19 143 0 1 149 0 11 270 1 0 20 4 0 90 0 2 6 1 0 286 0 1 230 0 2 15 2 0 289 0 4 445 0 1 309 0 1 262 0 3 152 3 0 24 0 2 170 0 1 182 20 24 467 0 1 453 0 1 128 chain 280327 chr1 249250621 + 174619297 174622862 L1P3 4156 - 17 4156 14622 23 1 0 9 2 0 272 3 1 6 2 0 5 0 4 1189 0 1 613 35 573 224 0 1 4 0 4 95 0 1 110 0 1 551 7 15 115 1 0 61 13 27 45 0 1 35 13 21 33 1 2 97 chain 145659 chr1 249250621 + 174643232 174644816 L1PA3long 6157 - 4 1589 25232 231 0 1 1353 chain 53348 chr1 249250621 + 174647774 174648473 LTR17 781 - 24 781 56808 23 0 22 109 0 49 18 1 0 15 0 1 4 2 0 45 3 0 30 0 1 113 1 0 218 8 0 109 chain 86664 chr1 249250621 + 174663340 174664287 L1PA3long 6157 - 1 949 40899 855 0 1 92 chain 162088 chr1 249250621 + 174677925 174680035 L1P3 4156 + 411 2531 23051 203 7 8 70 22 20 429 2 0 56 3 4 193 0 3 115 21 33 253 0 2 166 21 7 202 0 1 142 0 5 101 0 1 70 0 2 34 chain 35688 chr1 249250621 + 174680046 174680531 LTR12C 1709 - 1183 1709 75290 55 5 7 83 0 43 14 15 2 271 11 20 31 chain 2362 chr1 249250621 + 174681194 174681325 LTR12C 1709 + 837 871 234685 23 97 0 11 chain 13799 chr1 249250621 + 174694969 174695125 L1PA4 6152 + 5995 6151 145275 156 chain 9888 chr1 249250621 + 174717617 174718434 MER4D1 891 - 65 258 161139 96 626 0 19 44 46 32 chain 15973 chr1 249250621 + 174728810 174729143 MSTB 430 - 123 430 138437 16 1 0 33 0 2 7 55 62 6 1 0 25 2 0 56 5 3 54 29 0 43 chain 6502 chr1 249250621 + 174734461 174734577 L1MB7 1623 - 495 609 181219 71 23 21 22 chain 17878 chr1 249250621 + 174736882 174737236 THE1B 368 - 0 360 133170 117 69 74 7 1 0 6 0 1 45 9 10 12 8 9 39 0 1 33 2 0 6 chain 8384 chr1 249250621 + 174741784 174741957 L1MB3 1562 - 55 196 168936 38 2 0 27 54 24 52 chain 171822 chr1 249250621 + 174749714 174751657 L1PA5 6144 - 6 1953 21840 142 3 1 189 0 1 504 1 5 403 0 1 701 chain 5710 chr1 249250621 + 174789462 174789533 MER63B 433 - 51 121 188018 56 1 0 14 chain 10757 chr1 249250621 + 174795215 174795349 L1PA16 3655 - 86 221 157171 54 0 1 80 chain 4466 chr1 249250621 + 174799053 174799108 MLT1H2 457 - 8 63 201164 55 chain 557608 chr1 249250621 + 174812364 174818381 L1PA2 6032 - 0 6021 542 852 0 4 5165 chain 22143 chr1 249250621 + 174838356 174838742 THE1D 372 + 0 372 119611 65 0 10 26 34 9 56 25 27 139 15 14 26 chain 10386 chr1 249250621 + 174854227 174854355 LTR19A 502 + 374 502 158760 128 chain 169060 chr1 249250621 + 174864581 174866483 L1PA5 6144 - 0 1909 22165 843 0 4 847 0 3 212 chain 22156 chr1 249250621 + 174870370 174870743 THE1C 375 - 0 375 119569 25 1 0 136 40 38 33 9 13 35 16 17 78 chain 3762 chr1 249250621 + 174890359 174890401 MLT1B 390 + 346 388 210925 42 chain 19143 chr1 249250621 + 174898121 174898344 L1PA5 6144 + 5902 6126 129697 91 2 3 130 chain 17843 chr1 249250621 + 174951278 174951515 L1PA7 6471 - 5 243 133263 8 0 2 146 5 4 78 chain 13327 chr1 249250621 + 174953215 174953380 L1PA8A 6298 - 7 169 146983 112 2 0 30 1 0 20 chain 23084 chr1 249250621 + 174956309 174956590 AluSc 308 - 16 297 115219 281 chain 8642 chr1 249250621 + 174991618 174991716 HY3 101 - 3 101 167525 98 chain 155629 chr1 249250621 + 175014991 175017864 L1MA2 4263 - 1570 3722 23902 28 5 4 17 2 0 13 0 2 28 10 1 40 0 4 72 1 0 4 0 1 409 307 0 79 0 2 16 4 0 38 10 18 38 1 2 64 4 7 253 11 11 6 0 4 18 327 0 262 0 1 46 0 1 28 0 4 130 0 1 69 0 3 75 4 6 187 99 0 48 10 6 49 5 1 56 chain 50091 chr1 249250621 + 175025784 175026365 L1PA7 6471 - 1 582 58951 581 chain 73582 chr1 249250621 + 175026365 175027227 L1PA7 6471 + 5011 5874 46746 698 0 1 164 chain 23880 chr1 249250621 + 175037760 175038039 AluSp 311 + 0 277 111023 132 2 0 145 chain 7154 chr1 249250621 + 175048951 175049049 MER5A 189 - 56 162 176376 36 5 13 57 chain 25926 chr1 249250621 + 175054738 175055030 AluSp 311 + 10 302 100312 292 chain 139444 chr1 249250621 + 175070211 175072001 LTR12C 1709 - 0 1709 26230 157 7 0 140 0 4 180 0 4 107 3 1 5 1 0 60 0 41 173 120 0 837 chain 9989 chr1 249250621 + 175071045 175071164 LTR12C 1709 - 872 991 139278 119 chain 252008 chr1 249250621 + 175073045 175076213 HERV9-int 5642 - 2607 5642 16128 11 1 0 1652 69 69 193 1 0 3 83 0 197 4 0 90 2 3 26 6 5 669 1 2 98 45 0 17 chain 139696 chr1 249250621 + 175076241 175078158 LTR12C 1709 - 0 1709 26190 123 131 0 358 0 4 107 3 1 5 1 0 88 0 41 145 1 0 17 119 0 171 0 1 648 chain 203 chr1 249250621 + 175077220 175077271 LTR12C 1709 - 1008 1059 103623 51 chain 29835 chr1 249250621 + 175078208 175078523 AluYb8 318 - 3 318 85334 315 chain 44326 chr1 249250621 + 175088166 175088722 MER41A 554 - 0 554 63795 138 9 7 409 chain 38492 chr1 249250621 + 175098043 175098568 MER41C 542 - 0 542 71448 171 1 0 4 7 10 41 1 2 124 0 8 130 4 5 19 0 5 23 chain 70688 chr1 249250621 + 175144382 175145171 L1PA5 6144 + 5354 6144 48070 678 0 1 111 chain 20959 chr1 249250621 + 175174011 175174311 MER4B 649 - 8 292 124069 8 1 0 71 1 0 105 1 0 31 6 0 6 7 0 63 chain 30785 chr1 249250621 + 175201051 175201479 MLT2A1 477 - 79 477 82888 73 36 0 82 1 2 67 1 5 26 0 1 142 chain 293021 chr1 249250621 + 175203222 175207314 L1PBa1 4058 + 10 4040 13823 27 15 12 6 1 0 178 3 1 75 11 6 116 3 1 47 0 21 66 1 0 50 10 14 187 2 3 277 12 11 79 0 1 479 2 0 421 0 2 122 10 0 61 0 1 137 0 7 49 17 9 128 1 0 616 2 3 74 0 1 61 13 15 61 1 0 11 0 4 27 4 12 16 0 2 42 7 0 6 3 0 107 12 10 19 11 10 41 2 0 108 3 1 9 43 4 4 1 0 12 8 0 15 3 1 20 12 7 21 1 0 9 12 9 5 1 0 7 1 0 7 1 0 16 2 1 42 chain 11031 chr1 249250621 + 175209818 175210370 L1PB1 5432 + 5168 5417 156089 52 19 17 44 350 55 10 2 0 27 1 0 18 1 0 11 1 0 11 1 0 4 chain 30008 chr1 249250621 + 175211390 175211767 MLT2A1 477 + 0 381 84782 142 0 1 24 2 6 150 1 0 58 chain 452414 chr1 249250621 + 175212102 175217675 HERVL-int 5654 + 0 5654 8676 56 6 7 6 1 0 99 0 3 524 0 2 5 8 6 399 11 12 412 2 3 369 0 2 56 2 0 109 0 9 242 0 11 22 0 1 5 1 0 75 8 9 41 0 1 86 0 1 120 0 2 265 2 14 295 0 3 65 0 20 224 0 8 958 1 0 4 1 0 206 0 6 461 8 9 146 3 5 47 1 2 221 chain 12348 chr1 249250621 + 175217675 175217817 MLT2A1 477 + 0 142 150840 142 chain 499250 chr1 249250621 + 175225252 175231523 L1PA6 6164 - 8 6164 6876 268 0 1 188 1 0 217 6 8 159 0 2 141 0 5 816 0 2 640 6 7 394 0 1 7 8 6 104 0 1 864 2 1 93 136 0 52 0 1 316 1 2 142 0 1 624 0 3 67 1 0 45 0 1 161 0 17 237 1 4 17 1 3 89 19 0 360 0 1 88 chain 2456 chr1 249250621 + 175237852 175237878 MLT1N2 510 + 0 26 233642 26 chain 263569 chr1 249250621 + 175259317 175262530 L1PA7 6471 + 3207 6469 15503 277 25 17 145 3 4 278 1 0 4 0 3 488 18 6 370 4 5 474 17 28 13 0 1 11 0 12 271 0 3 444 0 38 370 chain 3332 chr1 249250621 + 175262695 175262748 LOR1-int 1871 + 1001 1054 218368 34 1 0 5 1 2 12 chain 25239 chr1 249250621 + 175264947 175265241 AluSq10 312 - 17 312 103544 75 0 1 219 chain 5055 chr1 249250621 + 175280030 175280174 MER20 218 + 29 198 194581 50 61 85 14 3 4 16 chain 68471 chr1 249250621 + 175294368 175295144 L1PA5 6144 + 5347 6124 49057 29 0 1 747 chain 73453 chr1 249250621 + 175404817 175405642 L1PA4 6152 - 4046 4872 46768 57 1 2 767 chain 359860 chr1 249250621 + 175405642 175409673 L1PA4 6152 + 2112 6151 11365 161 0 1 39 1 0 43 3 0 73 0 3 150 0 4 1650 7 8 104 0 4 942 0 1 791 2 0 65 chain 6100 chr1 249250621 + 175455144 175455258 MER1B 344 - 16 133 184403 23 6 3 16 16 22 53 chain 90383 chr1 249250621 + 175455260 175456317 L1PA7 6471 - 1 1057 39512 11 2 0 160 4 3 253 0 2 331 0 1 88 1 0 207 chain 63318 chr1 249250621 + 175459042 175459855 L1PA11 4918 + 3703 4512 51311 305 0 1 323 1 0 63 1 0 12 2 0 68 3 1 25 0 1 10 chain 17715 chr1 249250621 + 175477140 175477411 L1PA8 5853 + 5587 5853 133660 23 2 0 67 7 6 6 1 0 10 0 1 30 12 11 19 1 0 93 chain 10244 chr1 249250621 + 175491456 175491678 L1PB1 5432 + 5221 5420 159402 15 1 0 44 1 0 11 62 46 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 23871 chr1 249250621 + 175494107 175494443 THE1C 375 + 0 334 111079 116 12 29 8 20 0 31 2 3 147 chain 4005 chr1 249250621 + 175512955 175513004 U5 65 + 0 49 207311 49 chain 65986 chr1 249250621 + 175526704 175527421 L1PA2 6032 + 5316 6032 50107 5 1 0 711 chain 33228 chr1 249250621 + 175558753 175559145 L1PA7 6471 + 6080 6466 78834 374 6 0 12 chain 11846 chr1 249250621 + 175597528 175597660 L1PA4 6152 + 6019 6151 152844 132 chain 59601 chr1 249250621 + 175626318 175626986 L1PA4 6152 + 5403 6079 53052 603 0 7 25 0 1 40 chain 4612 chr1 249250621 + 175627023 175627072 L1PA4 6152 + 6094 6143 199486 49 chain 28203 chr1 249250621 + 175693286 175693695 MSTA 426 - 18 426 92297 159 49 48 68 1 0 106 0 1 26 chain 17773 chr1 249250621 + 175780900 175781309 L1PA13 3608 + 3199 3548 133499 68 7 4 4 0 1 60 1 0 20 2 0 22 46 18 48 10 6 18 1 0 18 26 18 14 1 0 6 7 1 7 1 0 9 6 0 7 chain 5567 chr1 249250621 + 175795312 175795405 L1MA4 2864 + 2724 2809 189404 14 9 3 26 3 1 41 chain 24662 chr1 249250621 + 175797307 175797664 THE1B 368 - 0 368 106662 138 1 0 31 5 4 30 2 0 91 15 30 44 chain 27034 chr1 249250621 + 175801420 175801839 MER4B 649 - 17 453 96165 51 3 0 128 15 15 13 2 1 4 1 0 32 1 0 19 5 23 123 10 15 12 chain 4298 chr1 249250621 + 175803767 175803828 MER49 923 + 0 63 203247 7 0 1 22 1 2 31 chain 7341 chr1 249250621 + 175876649 175876727 L1PA3long 6157 - 7 85 175153 78 chain 28363 chr1 249250621 + 175890196 175890549 THE1A 353 + 0 353 91720 111 1 0 79 0 2 6 1 0 155 chain 9579 chr1 249250621 + 175891731 175891961 LTR49 580 + 342 580 162702 13 15 25 47 51 49 40 1 0 15 7 8 41 chain 43039 chr1 249250621 + 175895426 175895977 MLT2A2 560 - 0 560 65367 53 0 1 6 1 0 87 3 14 219 1 0 146 1 0 34 chain 9167 chr1 249250621 + 175902652 175902770 L1PA7 6471 + 6342 6459 164717 75 1 0 42 chain 15655 chr1 249250621 + 175903191 175903410 MER30 238 + 0 238 139413 95 0 2 8 6 0 9 4 27 97 chain 5724 chr1 249250621 + 175906596 175906666 MER21B 843 + 672 742 187893 70 chain 25644 chr1 249250621 + 175906901 175907217 AluYk4 311 - 8 311 101521 171 15 0 34 0 2 96 chain 549442 chr1 249250621 + 175961398 175967607 L1PA3long 6157 + 4 6157 1526 75 0 1 482 0 1 5 0 4 2617 1 0 1845 0 1 662 2 1 58 79 18 383 chain 4655 chr1 249250621 + 175967145 175967198 L1PA3long 6157 + 6094 6147 197012 53 chain 542407 chr1 249250621 + 175971498 175977503 L1PA2 6032 - 8 6029 2445 144 1 0 700 0 7 2117 0 1 430 0 3 201 0 1 1142 0 5 1270 chain 124111 chr1 249250621 + 176026480 176027908 SVA_D 2077 + 44 2077 29659 496 0 40 141 0 80 106 2 0 9 1 38 19 0 1 15 8 0 13 0 1 38 0 3 5 2 445 235 0 10 338 chain 29047 chr1 249250621 + 176032183 176032495 AluYb8 318 - 7 318 88774 179 1 0 132 chain 140631 chr1 249250621 + 176055732 176057397 L1PA6 6164 + 4488 6162 26046 9 0 2 140 5 6 405 0 1 263 1 5 581 0 1 261 chain 9818 chr1 249250621 + 176075008 176075147 LTR8 732 + 0 149 161501 19 0 1 4 6 15 110 chain 24119 chr1 249250621 + 176091010 176091293 AluY 311 + 16 300 109642 116 0 1 167 chain 37214 chr1 249250621 + 176129469 176129941 L1PA8A 6298 + 5243 5712 73221 226 2 1 19 4 2 221 chain 29994 chr1 249250621 + 176140284 176140711 Tigger1 2417 - 1420 1854 84827 60 6 5 229 3 9 13 0 1 25 10 11 81 chain 6668 chr1 249250621 + 176166571 176166708 MLT1B 390 + 252 390 179922 17 44 45 76 chain 2450 chr1 249250621 + 176167348 176167542 L1ME1 1623 + 433 629 233694 21 18 17 15 122 125 18 chain 7427 chr1 249250621 + 176190315 176190405 MER41B 635 + 511 600 174603 85 1 0 4 chain 19796 chr1 249250621 + 176199921 176200262 MSTA 426 + 0 389 127824 105 13 0 9 1 42 61 0 2 8 41 39 30 1 21 72 chain 299395 chr1 249250621 + 176201041 176204958 L1PA7 6471 - 2 3617 13460 10 2 0 683 7 6 74 5 9 66 1 0 127 0 1 38 12 13 773 0 4 83 0 3 81 0 1 488 2 0 157 0 1 265 317 0 27 5 10 53 0 1 641 chain 2916 chr1 249250621 + 176213129 176213161 U2 167 - 135 167 226749 32 chain 3307 chr1 249250621 + 176215311 176215352 L1MA1 4479 - 330 370 218823 7 1 0 33 chain 22806 chr1 249250621 + 176218343 176218615 AluSc 308 - 24 296 116547 272 chain 9201 chr1 249250621 + 176223985 176224105 LTR48B 642 - 86 205 164550 112 1 0 7 chain 10233 chr1 249250621 + 176224213 176224340 L1MA5 2750 - 924 1051 159457 127 chain 558460 chr1 249250621 + 176225221 176231246 L1PA2 6032 - 0 6030 456 666 1 2 4792 0 4 566 chain 36572 chr1 249250621 + 176263762 176264188 L1PA6 6164 - 2 475 74136 417 0 47 9 chain 162531 chr1 249250621 + 176264188 176266361 L1P2 5180 - 2999 5178 22995 329 3 8 393 3 5 182 0 1 176 14 14 168 9 13 98 2 1 6 1 0 272 1 0 54 1 0 130 85 84 47 1 0 25 6 7 19 5 4 143 chain 10089 chr1 249250621 + 176266708 176266834 L1MA3 4352 - 3343 3469 160138 126 chain 6387 chr1 249250621 + 176270898 176270975 L1PREC2 3366 - 1567 1643 182128 37 1 0 39 chain 538268 chr1 249250621 + 176277531 176283546 L1PA3long 6157 - 15 6157 3112 2191 3 5 775 1 0 788 0 2 1477 7 135 423 7 6 186 1 2 52 5 0 63 1 2 35 chain 5279 chr1 249250621 + 176294315 176294376 LTR39 781 - 677 738 192214 61 chain 211753 chr1 249250621 + 176301994 176304386 L1PA5 6144 - 3 2409 18378 242 0 1 599 1 5 342 0 1 606 0 4 192 0 4 410 chain 26189 chr1 249250621 + 176309777 176310118 L1PB1 5432 - 428 770 99242 189 18 19 134 chain 13835 chr1 249250621 + 176310414 176310704 L1PB1 5432 + 5158 5424 145112 9 2 0 23 0 1 29 2 1 16 8 7 37 1 0 15 1 0 5 18 8 18 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 12471 chr1 249250621 + 176313163 176313466 MSTA 426 - 48 426 150370 61 5 25 13 117 172 107 chain 108194 chr1 249250621 + 176317674 176318971 LTR12C 1709 - 0 1709 34649 82 1 0 399 2 6 29 0 125 54 0 278 127 1 10 106 5 6 134 4 0 353 chain 3914 chr1 249250621 + 176319733 176319791 Charlie1b 519 + 193 252 208643 42 2 0 5 0 3 9 chain 460596 chr1 249250621 + 176325579 176331119 L1PA6 6164 + 577 6162 8381 984 5 7 284 20 20 245 0 3 204 7 1 100 0 1 754 1 5 4 0 1 44 4 8 64 1 0 10 3 4 220 21 25 44 1 0 93 0 1 529 0 6 124 1 5 242 0 1 321 0 1 507 0 12 610 0 8 93 chain 13813 chr1 249250621 + 176342145 176342354 L1MA5 2750 - 1577 1784 145203 112 29 27 68 chain 92490 chr1 249250621 + 176355919 176360691 L1PA10 4194 - 609 3997 38818 93 0 1 349 1 0 4 1 3 11 5 2 125 0 10 96 0 3 104 0 1 70 3229 1939 210 6 8 26 0 1 45 5 2 79 1 0 8 13 0 13 5 0 12 1 0 7 2 1 6 1 0 21 2 0 22 1 0 7 45 19 15 2 0 22 1 0 5 80 29 9 2 0 10 chain 62825 chr1 249250621 + 176357018 176357718 L1PA4 6152 - 1 703 51528 153 1 2 280 0 1 266 chain 15001 chr1 249250621 + 176361845 176362010 L1PA5 6144 - 7 172 141317 165 chain 142152 chr1 249250621 + 176364623 176366749 SVA_D 2077 - 214 2065 25795 473 103 26 162 401 0 148 0 136 15 2 0 139 0 40 588 0 27 49 0 2 46 chain 3672 chr1 249250621 + 176365096 176365199 SVA_D 2077 - 737 840 79076 103 chain 29319 chr1 249250621 + 176365404 176365735 SVA_F 1814 - 523 852 87441 17 1 0 136 0 1 136 2 0 39 chain 236427 chr1 249250621 + 176367834 176371640 L1MA1 4479 - 289 4058 16958 18 7 0 13 4 2 6 1 0 9 123 120 27 1 0 40 12 8 30 0 1 57 1 0 10 17 15 5 1 0 74 1 0 16 2 0 25 1 0 138 1 0 63 1 0 73 9 12 29 11 10 73 5 0 53 9 5 7 1 0 73 4 0 8 4 0 14 8 6 44 0 6 52 0 4 58 12 10 18 1 0 101 3 0 70 14 11 5 0 3 6 0 4 90 1 0 72 2 9 5 1 0 99 4 7 203 7 1 134 14 23 24 0 1 130 2 0 64 50 9 141 1 3 47 12 11 166 27 29 52 0 1 111 1 0 84 3 5 198 27 42 11 3 0 10 1 5 19 0 4 23 1 0 4 0 1 135 4 0 20 61 67 226 15 19 32 chain 505986 chr1 249250621 + 176379798 176386737 L1PA7 6471 - 1 6468 6465 154 6 9 634 0 1 59 1 0 6 1 2 11 9 10 475 44 0 958 5 3 49 222 10 86 0 1 60 12 11 261 0 1 97 0 10 14 0 4 13 3 2 139 1 5 159 3 6 62 300 0 58 10 14 454 1 0 111 11 12 344 0 1 279 7 9 102 3 2 4 0 1 450 0 1 32 12 31 125 0 10 123 13 7 46 7 9 4 0 1 516 1 2 13 6 30 123 0 1 240 chain 72182 chr1 249250621 + 176420474 176421515 MER11A 1151 + 0 1151 47387 55 0 99 138 20 15 19 0 2 60 0 1 144 0 1 4 0 1 21 2 1 12 0 1 110 5 6 149 21 63 7 35 0 178 9 8 16 7 11 29 chain 4454 chr1 249250621 + 176423364 176423413 MER21C 908 - 321 370 201301 49 chain 3248 chr1 249250621 + 176474761 176474796 L1P4 1494 + 772 807 220039 35 chain 20511 chr1 249250621 + 176530901 176531264 THE1B 368 - 0 368 125593 112 71 76 11 1 0 48 12 13 108 chain 8175 chr1 249250621 + 176556937 176557032 L1PA6 6164 + 6061 6156 170096 95 chain 46900 chr1 249250621 + 176557047 176557611 L1PA8A 6298 - 1459 2022 61308 14 2 0 321 0 1 227 chain 18363 chr1 249250621 + 176566613 176566830 L1PA7 6471 + 6253 6468 131899 206 2 0 9 chain 4052 chr1 249250621 + 176567810 176567859 MER52C 1267 + 1101 1155 206618 41 0 5 8 chain 22088 chr1 249250621 + 176586510 176586961 L1PB1 5432 - 42 489 119847 20 1 0 15 11 9 14 1 0 5 2 0 14 13 17 16 2 1 37 10 29 35 26 20 14 1 0 9 1 0 21 5 0 11 7 0 119 2 0 5 3 5 31 chain 84005 chr1 249250621 + 176602776 176603730 L1PA5 6144 + 5177 6138 41902 98 0 4 530 1 3 33 0 1 292 chain 132206 chr1 249250621 + 176609331 176610774 L1PA3long 6157 - 1 1447 27588 330 0 3 737 0 1 319 1 0 56 chain 21549 chr1 249250621 + 176619559 176619807 L1PA5 6144 - 13 261 121967 248 chain 40857 chr1 249250621 + 176640764 176641207 L1PA3long 6157 + 5714 6157 68087 443 chain 9217 chr1 249250621 + 176644157 176644271 L1PB1 5432 - 966 1084 164471 77 0 3 32 0 1 5 chain 15482 chr1 249250621 + 176698602 176698783 L1P1 4361 + 2920 3101 139951 181 chain 2765 chr1 249250621 + 176703860 176703894 MADE2 80 + 0 34 229236 34 chain 13158 chr1 249250621 + 176718699 176719070 L1MC1 2226 - 130 445 147618 13 5 0 19 50 30 39 18 0 11 28 25 44 1 0 27 7 1 14 38 35 57 chain 6350 chr1 249250621 + 176719812 176719904 Tigger2a 444 - 168 258 182382 29 4 0 36 0 2 23 chain 31952 chr1 249250621 + 176720058 176720399 L1HS 6032 - 1084 1425 80163 341 chain 102452 chr1 249250621 + 176720399 176721491 L1HS 6032 + 4940 6032 36146 1092 chain 97480 chr1 249250621 + 176725857 176727000 L1PA6 6164 - 8 1159 37428 144 9 12 219 0 1 457 1 5 313 chain 37066 chr1 249250621 + 176758281 176758698 L1PA4 6152 + 5736 6151 73434 55 2 0 360 chain 9160 chr1 249250621 + 176761759 176761856 L1PA2 6032 + 5931 6028 164762 97 chain 123426 chr1 249250621 + 176782635 176784207 L1PA11 4918 - 452 2024 29907 59 2 0 13 2 1 55 8 7 233 0 2 35 0 1 191 4 5 204 1 0 375 1 2 389 chain 21619 chr1 249250621 + 176834845 176835188 THE1B 368 - 0 368 121698 66 0 2 6 1 0 50 36 46 25 2 1 108 5 20 44 chain 35764 chr1 249250621 + 176911658 176912169 MER4A1 472 + 0 467 75183 15 0 2 253 1 0 15 60 16 66 1 0 100 chain 8753 chr1 249250621 + 177063704 177063809 MLT1A0 366 + 261 366 166903 105 chain 92333 chr1 249250621 + 177170825 177171831 L1P1 4361 - 706 1711 38865 375 1 0 630 chain 70848 chr1 249250621 + 177171831 177172625 L1PA4 6152 + 5359 6152 47803 539 1 0 254 chain 6540 chr1 249250621 + 177256921 177257031 MER5A1 166 - 54 165 180920 12 24 25 74 chain 57989 chr1 249250621 + 177288514 177289224 LTR12 884 + 0 880 53981 25 1 0 30 0 173 153 2 0 499 chain 306302 chr1 249250621 + 177289254 177293090 HERV9-int 5642 + 5 4815 13162 51 12 1 420 0 1 118 13 8 10 5 0 98 0 4 80 2 1 125 0 3 102 80 0 80 9 6 157 0 1 24 1 2 284 0 1 206 0 3 450 0 1 113 6 9 32 0 2 255 1 108 249 7 942 211 0 11 275 0 6 360 chain 63754 chr1 249250621 + 177294588 177295393 LTR12 884 + 0 884 51120 25 1 0 30 0 41 126 1 3 74 0 6 14 0 25 33 2 0 367 4 12 128 chain 18324 chr1 249250621 + 177339431 177339718 L1PA14 3548 + 3118 3398 132006 13 2 0 6 1 0 4 1 0 80 1 0 32 0 6 71 1 0 12 5 1 36 4 2 12 1 0 5 chain 115137 chr1 249250621 + 177343862 177345411 THE1A-int 1579 - 5 1579 32740 12 1 0 277 6 6 217 9 16 21 38 64 259 7 0 449 1 0 215 0 1 37 chain 29740 chr1 249250621 + 177346889 177347274 MLT2A1 477 + 2 385 85691 58 1 0 109 4 1 8 1 2 24 0 1 180 chain 294168 chr1 249250621 + 177349489 177353501 L1PA10 4194 - 44 4019 13755 34 3 0 183 1 3 184 0 1 89 0 4 93 0 6 51 7 8 292 5 6 67 1 0 171 1 0 188 19 12 46 0 7 48 1 0 33 0 1 6 0 1 390 0 4 303 1 2 40 0 3 75 0 1 38 1 0 91 1 5 370 0 4 108 0 1 19 0 2 184 0 2 94 3 1 51 6 5 4 0 1 328 11 9 77 2 1 8 7 0 8 16 8 9 1 0 7 1 0 7 1 0 8 9 6 4 0 1 18 60 33 14 3 1 21 11 9 9 2 0 9 31 22 11 2 0 15 chain 543366 chr1 249250621 + 177370061 177376076 L1PA3long 6157 - 5 6153 2288 1222 0 2 1180 0 2 2842 0 128 623 0 1 148 chain 46000 chr1 249250621 + 177377893 177378386 L1PA2 6032 - 0 493 62041 493 chain 50261 chr1 249250621 + 177378457 177379098 L1PA8 5853 + 5227 5853 58817 337 1 0 45 2 0 22 3 0 47 2 1 9 6 0 52 2 1 19 1 0 93 chain 29221 chr1 249250621 + 177434753 177435127 THE1C 375 - 0 370 87950 25 1 0 225 3 0 120 chain 123027 chr1 249250621 + 177460454 177461852 L1PA5 6144 - 5 1450 30036 625 5 4 263 0 1 286 2 0 58 0 49 159 chain 58034 chr1 249250621 + 177478765 177479450 L1PA8 5853 - 788 1475 53861 56 1 4 540 1 0 87 chain 62072 chr1 249250621 + 177479450 177480226 L1PA8 5853 + 5080 5853 51867 6 0 2 291 0 2 183 1 0 45 2 0 70 1 0 9 2 1 51 2 1 21 1 0 91 chain 5049 chr1 249250621 + 177522010 177522089 MADE1 96 + 0 96 194644 46 0 16 10 3 4 20 chain 75196 chr1 249250621 + 177532454 177533286 L1PA3long 6157 - 2 835 45927 519 0 1 313 chain 179140 chr1 249250621 + 177533286 177535339 L1P1 4361 + 550 2595 21061 24 1 0 118 7 0 1115 1 2 505 1 0 281 chain 5148 chr1 249250621 + 177596088 177596317 L1MB4 1306 + 636 859 193556 32 144 139 5 1 0 47 chain 552514 chr1 249250621 + 177603062 177609081 L1PA2 6032 + 10 6027 1128 247 1 0 5433 0 1 189 3 1 146 chain 2345 chr1 249250621 + 177616959 177617394 MLT2F 649 - 70 604 234842 22 314 414 14 61 60 24 chain 35451 chr1 249250621 + 177623905 177624371 MER41C 542 + 50 542 75620 261 0 21 50 5 6 9 0 4 141 chain 2174 chr1 249250621 + 177634692 177634715 L1PA2 6032 + 5948 5971 236874 23 chain 5359 chr1 249250621 + 177634716 177634777 L1PA2 6032 + 5971 6032 191443 61 chain 543859 chr1 249250621 + 177640947 177647081 L1PA4 6152 - 0 6151 2231 512 2 0 1958 2 0 666 1 0 539 0 15 35 0 3 104 1 0 863 0 4 870 0 1 581 chain 12258 chr1 249250621 + 177648224 177648370 L1PA7 6471 - 15 162 151167 14 0 1 132 chain 530879 chr1 249250621 + 177661670 177667796 L1PA5 6144 + 0 6135 4098 393 0 4 43 0 6 165 2 1 112 1 2 1142 1 2 437 1 2 849 1 0 18 1 0 256 0 1 1861 2 1 572 1 0 268 chain 269498 chr1 249250621 + 177683424 177686695 L1PA8 5853 + 2573 5853 15206 49 0 4 255 2 1 900 0 2 270 4 12 514 0 1 18 0 1 409 0 2 82 2 0 471 1 0 43 7 5 73 11 10 45 2 1 19 1 0 93 chain 5646 chr1 249250621 + 177686845 177686916 MER53 195 - 89 160 188599 71 chain 192186 chr1 249250621 + 177688010 177690786 L1P2 5180 - 1285 3770 19851 133 321 0 53 1 12 301 3 1 20 1 5 234 1 0 206 4 7 133 6 9 32 6 8 162 0 4 130 0 4 51 0 1 62 2 0 195 0 1 208 0 1 14 0 1 497 chain 156702 chr1 249250621 + 177692029 177694552 L1PA13 3608 + 122 3541 23767 14 4 2 16 11 11 12 55 41 25 20 24 21 9 7 82 4 0 37 1 0 14 1 0 11 8 6 17 6 2 17 1 0 19 3 1 13 2 0 20 1 0 97 2 0 468 16 21 66 1 16 43 0 2 96 0 13 20 0 10 47 3 0 141 5 902 33 7 8 37 3 4 6 0 6 127 10 11 419 1 0 24 33 32 45 0 7 18 0 2 19 3 1 15 1 3 42 1 0 49 15 12 45 2 0 7 2 0 20 1 0 24 22 14 12 14 7 10 1 0 6 chain 26420 chr1 249250621 + 177696883 177697198 L1PA8 5853 + 5245 5564 98337 96 0 4 219 chain 21213 chr1 249250621 + 177697199 177697493 L1PA8 5853 + 5564 5847 123164 46 2 0 69 1 0 7 1 0 9 2 0 44 3 2 19 1 0 17 0 1 22 5 1 46 chain 545932 chr1 249250621 + 177728544 177734677 L1PA3long 6157 + 4 6157 1952 570 0 1 272 0 12 331 1 4 752 0 2 76 3 13 9 10 0 1168 0 1 1697 0 1 1244 chain 27043 chr1 249250621 + 177750988 177751363 THE1C 375 - 0 375 96138 25 1 0 152 17 12 5 0 2 38 2 0 27 0 1 71 0 5 37 chain 124184 chr1 249250621 + 177773589 177775048 L1P2 5180 - 2344 3814 29635 888 1 0 17 0 7 120 0 1 63 1 5 369 chain 101606 chr1 249250621 + 177775048 177776195 L1PA5 6144 + 3819 4971 36324 802 5 10 340 chain 103147 chr1 249250621 + 177776196 177777359 L1PA5 6144 + 4971 6132 35960 766 2 0 395 chain 58828 chr1 249250621 + 177781523 177782273 LTR17 781 + 0 781 53501 328 1 0 322 0 9 37 1 45 13 22 0 19 0 1 7 chain 206448 chr1 249250621 + 177812383 177814696 L1PA4 6152 + 3839 6152 18758 98 0 1 2203 1 0 11 chain 2921 chr1 249250621 + 177822000 177822035 MIR 256 - 0 35 226655 35 chain 12477 chr1 249250621 + 177824494 177824649 L1PA6 6164 + 6007 6160 150352 147 2 0 6 chain 21981 chr1 249250621 + 177830114 177830377 L1PA7 6471 + 6204 6466 120309 98 1 0 164 chain 31018 chr1 249250621 + 177838291 177838805 L1PA16 3655 - 573 1100 82480 20 0 1 42 1 0 34 0 2 61 1 0 14 0 4 1 1 0 13 3 7 94 25 33 12 5 4 23 43 42 97 1 0 23 chain 4021 chr1 249250621 + 177844224 177844270 MIRc 230 + 85 131 207059 46 chain 19953 chr1 249250621 + 177845865 177846220 THE1B 368 + 0 357 127294 106 9 11 17 4 1 42 39 70 8 28 0 102 chain 40919 chr1 249250621 + 177862394 177863031 L1PA16 3655 + 2931 3575 68012 53 0 2 97 0 3 52 0 3 63 3 2 29 70 68 144 0 6 6 8 2 50 0 2 62 chain 3073 chr1 249250621 + 177863224 177863464 L1MD3 1191 + 850 1085 223488 27 112 115 10 2 0 17 55 49 17 chain 25754 chr1 249250621 + 177879198 177879565 THE1B 368 + 0 368 101065 172 3 2 18 4 0 96 4 2 15 6 14 49 chain 32900 chr1 249250621 + 177886724 177887078 L1PA3long 6157 + 5803 6157 79368 354 chain 9895 chr1 249250621 + 177912435 177912572 L1PA8 5853 + 5718 5853 161091 22 2 1 19 2 1 92 chain 27311 chr1 249250621 + 177948771 177949125 THE1B 368 - 0 368 95238 191 12 11 107 0 15 44 chain 529257 chr1 249250621 + 177955165 177961325 L1PA6 6164 + 0 6162 4269 509 0 1 57 1 0 141 5 0 1625 0 1 639 0 3 194 1 0 20 0 1 696 6 8 1938 0 1 141 1 2 5 1 0 180 chain 280858 chr1 249250621 + 177982213 177985983 L1PB2 3958 - 120 3840 14591 63 2 1 92 2 1 58 6 5 73 1 0 94 5 0 12 2 0 51 0 1 5 12 5 14 0 3 53 2 0 97 1 0 143 8 0 54 0 1 72 2 1 4 0 1 10 1 0 430 26 11 59 0 1 100 0 1 353 0 1 6 0 1 197 1 2 165 1 0 10 3 0 311 1 2 23 9 0 333 1 2 4 1 0 95 0 1 47 18 17 10 0 1 132 2 6 143 3 0 31 0 3 197 4 1 49 1 0 11 2 0 28 9 7 15 chain 27918 chr1 249250621 + 177993423 177993789 THE1C 375 + 0 375 93286 180 5 15 155 1 0 25 chain 3244 chr1 249250621 + 178005267 178005334 MER5A 189 + 78 147 220122 34 19 21 14 chain 32817 chr1 249250621 + 178009375 178009799 LTR7B 505 + 0 496 79505 108 0 10 68 4 66 26 0 2 82 1 0 79 14 13 42 chain 15663 chr1 249250621 + 178012962 178013140 HERVH-int 3825 + 3647 3825 139392 178 chain 33103 chr1 249250621 + 178014600 178015056 LTR7B 505 + 0 496 79049 105 0 10 60 0 38 12 0 25 6 1 0 24 30 0 82 1 0 79 14 13 42 chain 91630 chr1 249250621 + 178059956 178061152 L1PA8 5853 + 4695 5853 39079 232 1 2 81 2 0 299 0 1 141 0 1 110 1 0 26 0 3 15 8 6 53 15 14 13 1 0 7 1 2 39 2 1 19 1 0 28 36 0 65 chain 30130 chr1 249250621 + 178081705 178082059 L1PA2 6032 + 5687 6027 84381 192 7 0 141 7 0 7 chain 186120 chr1 249250621 + 178087345 178090123 Charlie3 2679 - 0 2657 20406 32 49 50 173 10 212 371 322 0 333 1 0 447 0 1 257 0 1 65 9 14 197 13 14 78 0 1 360 19 13 8 3 0 18 1 0 12 chain 24376 chr1 249250621 + 178099926 178100218 AluYk4 311 + 19 300 108217 232 2 1 28 10 0 20 chain 25001 chr1 249250621 + 178104781 178105156 THE1B 368 - 0 368 104781 75 1 0 100 31 24 52 4 6 65 0 1 32 3 1 12 chain 20199 chr1 249250621 + 178110352 178110681 LTR17 781 - 455 781 126528 71 8 7 15 1 0 52 0 3 22 1 0 61 11 9 30 19 18 38 chain 6323 chr1 249250621 + 178112125 178112194 HERV17-int 4347 - 0 69 182623 69 chain 11057 chr1 249250621 + 178120566 178120728 MER82 654 - 471 631 155979 95 15 13 52 chain 7240 chr1 249250621 + 178129196 178129283 L1PA6 6164 - 2 96 175830 8 0 7 79 chain 36585 chr1 249250621 + 178144989 178145631 L1PB3 3668 - 140 752 74119 24 52 26 87 6 5 12 0 1 38 7 6 39 1 0 36 3 0 75 7 9 13 19 5 44 0 10 14 0 2 84 1 0 10 8 10 62 chain 54765 chr1 249250621 + 178166845 178167500 L1PA6 6164 - 8 659 55863 139 2 1 5 0 1 350 4 0 155 chain 79298 chr1 249250621 + 178167509 178168570 L1P2 5180 - 4108 5178 43911 279 1 0 6 1 0 272 1 0 7 12 11 60 12 20 18 24 31 173 1 0 45 1 0 148 chain 328665 chr1 249250621 + 178169302 178173479 HERVL-int 5654 + 1 5654 12251 311 47 52 114 0 3 268 0 7 52 4 16 18 0 1 109 0 1 145 0 1 25 1 0 200 1 12 43 9 6 250 0 1 88 0 2 11 0 4 78 6 11 15 4 5 12 0 1 211 1 1369 1320 0 4 245 2 3 210 1 0 136 0 3 58 1 47 133 0 4 48 chain 78702 chr1 249250621 + 178177033 178178091 MER11A 1151 + 0 1144 44185 23 4 8 27 4 103 67 1 0 64 5 1 31 0 2 114 5 6 92 0 1 296 25 8 77 0 1 46 1 0 16 0 1 160 chain 466502 chr1 249250621 + 178213707 178219447 L1PA8 5853 - 0 5745 8172 92 2 1 16 1 0 51 1 0 11 1 0 74 2 0 44 1 0 555 0 2 224 0 6 308 0 1 621 0 1 380 5 6 426 11 0 70 0 9 925 0 1 3 0 1 17 0 22 126 0 1 24 1 0 75 4 7 87 0 4 876 0 3 111 0 1 4 6 7 22 0 3 21 34 1 13 0 4 50 0 2 41 0 1 58 0 4 127 26 13 73 1 0 119 chain 30502 chr1 249250621 + 178222634 178223054 LTR7 482 - 12 481 83422 70 0 1 8 0 1 81 0 2 46 0 31 115 15 14 40 1 16 44 chain 20688 chr1 249250621 + 178230793 178231064 AluSg7 307 + 18 296 125010 29 1 7 78 2 1 140 0 2 21 chain 41720 chr1 249250621 + 178235622 178236255 LTR9B 643 - 0 638 67000 188 7 9 15 9 10 84 5 3 56 23 24 44 11 10 12 1 2 66 1 2 80 1 0 24 0 3 6 chain 44188 chr1 249250621 + 178238521 178239066 MER41A 554 + 0 554 63959 290 0 9 227 1 0 15 0 1 12 chain 29852 chr1 249250621 + 178254238 178254554 AluYb8 318 - 2 318 85272 316 chain 20149 chr1 249250621 + 178256617 178257106 L1PB1 5432 + 4963 5422 126681 32 23 14 5 0 2 82 12 11 6 3 0 23 1 0 8 1 0 10 20 14 17 0 2 20 1 12 15 1 0 43 3 1 16 2 0 6 16 6 15 40 35 12 1 0 22 1 0 12 1 0 14 1 0 4 chain 14088 chr1 249250621 + 178264403 178264595 L1PA8A 6298 - 6 199 144270 4 0 1 89 7 0 14 1 8 77 chain 63490 chr1 249250621 + 178275242 178275933 L1PA2 6032 - 211 902 51250 691 chain 18862 chr1 249250621 + 178275945 178276162 L1PA2 6032 + 5811 6032 130481 7 0 4 210 chain 5366 chr1 249250621 + 178278900 178279109 Tigger9b 617 - 208 420 191361 37 112 118 19 7 4 34 chain 557397 chr1 249250621 + 178283930 178289953 L1PA2 6032 - 7 6031 566 5583 1 2 439 chain 8971 chr1 249250621 + 178297402 178297617 L1MA3 4352 - 0 215 165765 21 3 0 3 1 0 14 1 0 26 2 1 5 1 0 46 4 0 8 48 59 32 chain 8548 chr1 249250621 + 178320888 178320988 MSTA-int 1630 - 212 312 168030 100 chain 41564 chr1 249250621 + 178320989 178321492 MER75 514 - 0 503 67202 503 chain 39594 chr1 249250621 + 178362240 178362769 MER1A 529 - 1 529 69896 63 13 8 314 8 12 131 chain 22778 chr1 249250621 + 178373508 178373805 AluSc 308 - 16 300 116684 7 13 0 277 chain 70538 chr1 249250621 + 178379461 178380640 L1PB1 5432 + 4270 5390 48140 235 13 15 30 1 0 9 4 6 51 0 3 10 7 1 73 4 5 58 1 0 37 21 22 166 0 3 20 4 8 81 45 11 16 9 4 10 1 0 13 4 0 11 3 1 50 1 0 17 1 0 43 2 1 21 19 7 18 3 1 5 1 0 14 2 0 24 1 0 20 chain 27463 chr1 249250621 + 178468434 178469211 MLT2A2 560 + 0 560 94773 108 1 0 15 1 0 57 1 0 16 34 36 61 6 0 8 11 126 72 326 0 6 0 1 54 chain 41005 chr1 249250621 + 178523210 178523697 MER9a2 513 - 0 513 67894 66 0 2 382 0 6 10 0 23 5 5 0 19 chain 389420 chr1 249250621 + 178523697 178528323 HERVK9-int 4720 - 0 4684 10468 815 0 48 93 0 11 136 0 1 133 0 1 372 0 10 482 0 2 673 1 0 122 0 3 761 0 1 72 0 1 172 11 2 312 15 12 323 1 0 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 43045 chr1 249250621 + 178529101 178529607 MER9a2 513 - 0 504 65361 68 2 0 436 chain 4829 chr1 249250621 + 178548446 178548505 MER20 218 + 112 172 197029 11 0 1 48 chain 6170 chr1 249250621 + 178558182 178558257 L1MA5A 2387 + 1775 1850 183803 75 chain 87971 chr1 249250621 + 178561192 178562242 L1PA6 6164 + 5104 6162 40386 208 0 4 74 9 8 420 8 12 186 1 2 144 chain 2857 chr1 249250621 + 178572189 178572244 MIRb 242 + 81 134 227696 21 14 12 20 chain 8826 chr1 249250621 + 178591728 178591876 MER30 238 - 10 163 166517 94 26 28 10 0 3 18 chain 34915 chr1 249250621 + 178647500 178647956 Tigger4 2445 + 377 839 76319 137 0 1 14 0 5 203 6 3 7 0 3 89 chain 24641 chr1 249250621 + 178649602 178649889 AluSp 311 + 0 293 106772 84 0 4 65 0 2 138 chain 23726 chr1 249250621 + 178706386 178706672 AluSg7 307 - 15 299 111902 49 2 1 110 1 0 124 chain 83514 chr1 249250621 + 178734372 178735407 MER11C 1089 - 16 1082 42114 288 5 13 173 8 9 140 0 1 112 1 18 52 0 3 147 0 1 109 chain 18698 chr1 249250621 + 178742734 178742944 AluY 311 + 85 296 130951 47 0 1 163 chain 18767 chr1 249250621 + 178746087 178746294 L1PA2 6032 - 2 209 130780 207 chain 156929 chr1 249250621 + 178746294 178747983 L1PA2 6032 + 4134 5823 23737 1689 chain 9559 chr1 249250621 + 178770813 178770946 Tigger2 2703 + 1872 2006 162785 38 15 16 80 chain 120703 chr1 249250621 + 178773414 178774722 L1PA3long 6157 - 1 1308 30797 4 1 0 1303 chain 25298 chr1 249250621 + 178793671 178793967 AluY 311 + 10 306 103234 296 chain 28494 chr1 249250621 + 178796527 178796829 AluYa5 310 - 9 310 91211 183 1 0 118 chain 495501 chr1 249250621 + 178806692 178812801 L1PA2 6032 + 10 6032 7101 144 7 12 66 25 24 34 55 54 210 16 21 132 5 12 49 138 10 46 0 4 147 6 12 332 0 2 701 0 2 176 0 4 27 0 2 33 0 4 678 0 4 105 1 0 30 7 5 12 0 4 17 8 0 11 5 10 2886 chain 2812 chr1 249250621 + 178832110 178832239 MIR 256 - 33 188 228584 24 53 76 18 20 23 14 chain 56046 chr1 249250621 + 178865602 178866215 L1PA2 6032 - 0 620 55091 150 1 8 462 chain 25193 chr1 249250621 + 178866215 178866483 L1PA2 6032 + 5162 5430 103778 268 chain 125978 chr1 249250621 + 178872504 178874225 L1PB1 5432 - 8 1695 29110 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 12 26 14 5 1 0 16 1 0 43 1 0 16 2 1 45 35 28 9 1 0 24 3 0 9 1 2 299 1 0 195 1 0 228 0 1 212 0 4 162 5 4 101 2 0 114 0 1 45 chain 12105 chr1 249250621 + 178878565 178878764 L1PA16 3655 - 1396 1597 151777 81 31 32 74 0 1 13 chain 44211 chr1 249250621 + 178899335 178899892 MER41A 554 + 0 554 63930 54 0 6 13 4 1 255 7 0 101 0 1 123 chain 30043 chr1 249250621 + 178906245 178906563 AluYb8 318 - 0 318 84669 318 chain 4091 chr1 249250621 + 178934150 178934200 MLT1H1 527 + 391 441 206073 50 chain 62192 chr1 249250621 + 178944674 178945457 LTR12 884 + 2 860 51809 23 1 0 113 22 6 19 0 2 124 0 88 146 5 7 330 chain 537896 chr1 249250621 + 178956734 178962708 L1PA3long 6157 - 2 6108 3166 803 2 0 1208 0 1 710 1 0 167 0 4 2207 0 1 150 9 137 613 0 1 104 chain 10686 chr1 249250621 + 178963597 178963731 Tigger1 2417 - 1042 1186 157473 28 0 8 45 0 2 61 chain 23536 chr1 249250621 + 178965277 178965651 Tigger1 2417 - 865 1244 112928 53 29 0 7 8 0 79 0 19 17 0 2 28 0 8 45 0 2 61 11 22 36 chain 161766 chr1 249250621 + 179008877 179010815 SVA_D 2077 - 9 2077 23097 605 0 98 174 49 0 89 0 5 12 0 51 31 0 1 9 0 1 38 1 38 321 41 0 406 0 30 128 1 0 6 1 0 6 1 0 6 2 0 5 0 2 6 chain 2865 chr1 249250621 + 179009656 179009705 SVA_D 2077 - 710 759 81155 49 chain 2318 chr1 249250621 + 179010211 179010247 SVA_D 2077 - 1486 1522 183743 36 chain 4585 chr1 249250621 + 179048327 179048385 MER5A1 166 - 63 126 199803 14 0 5 44 chain 166016 chr1 249250621 + 179103845 179105838 SVA_D 2077 + 11 2056 22513 25 0 2 15 0 2 508 1 0 162 0 3 20 16 13 147 2 0 8 3 1 17 0 138 181 53 0 7 1 0 80 1 0 44 29 4 13 4 0 37 1 0 618 chain 4673 chr1 249250621 + 179104950 179105003 SVA_D 2077 + 1026 1126 76814 9 0 47 44 chain 2557 chr1 249250621 + 179105136 179105165 SVA_D 2077 + 1257 1286 76814 29 chain 73559 chr1 249250621 + 179107791 179108658 LTR12C 1709 + 0 1709 46755 161 1 0 108 6 0 159 8 857 424 chain 14830 chr1 249250621 + 179143471 179143647 AluSp 311 + 10 184 141840 118 2 0 56 chain 9161 chr1 249250621 + 179151654 179151798 L1PB4 2604 - 105 246 164758 65 4 3 51 8 6 16 chain 6041 chr1 249250621 + 179165222 179165330 MER68 562 - 457 562 184884 52 25 21 24 0 1 7 chain 15650 chr1 249250621 + 179177444 179177642 L1PA16 3655 - 64 260 139432 13 3 0 178 0 1 4 chain 11125 chr1 249250621 + 179194680 179194867 MER20 218 + 8 195 155711 27 10 12 20 24 22 106 chain 12844 chr1 249250621 + 179200438 179200703 Tigger4b 360 + 16 329 148875 18 73 105 24 0 1 40 1 0 86 1 17 22 chain 19230 chr1 249250621 + 179219294 179219543 AluSp 311 + 38 287 129432 104 3 0 6 4 7 132 chain 3024 chr1 249250621 + 179231896 179232013 MER5A1 166 + 42 165 224571 24 28 42 16 30 22 19 chain 24716 chr1 249250621 + 179243324 179243637 AluSx1 309 + 0 306 106352 120 5 0 168 2 0 18 chain 24489 chr1 249250621 + 179266473 179266756 AluSg7 307 - 11 294 107608 283 chain 23059 chr1 249250621 + 179271426 179271784 THE1D 372 + 0 371 115360 5 3 0 157 22 34 14 13 14 116 1 4 27 chain 24353 chr1 249250621 + 179276927 179277224 AluSp 311 - 13 311 108353 154 5 6 138 chain 41082 chr1 249250621 + 179332217 179332744 MER41A 554 - 0 554 67793 12 1 0 69 1 8 4 1 0 29 0 1 22 0 4 267 0 17 121 chain 25645 chr1 249250621 + 179333325 179333614 AluSp 311 + 13 302 101515 289 chain 21758 chr1 249250621 + 179336374 179336651 AluSc 308 + 0 282 121176 33 0 4 69 4 6 23 3 2 145 chain 17948 chr1 249250621 + 179336651 179336874 AluSg 306 + 60 283 132984 223 chain 153116 chr1 249250621 + 179342332 179344120 L1PA6 6164 + 4374 6160 24215 817 6 5 122 0 4 746 3 0 86 2 0 6 chain 108245 chr1 249250621 + 179361485 179363022 L1PB2 3958 - 120 1626 34633 59 6 5 21 2 0 65 8 7 64 1 0 49 18 22 6 2 0 89 2 0 12 2 0 53 14 9 16 29 28 24 2 0 215 0 5 165 1 0 210 1 0 35 1 0 109 19 18 66 19 1 57 4 5 91 chain 3056 chr1 249250621 + 179364713 179364750 MIR 256 + 127 164 223871 37 chain 58815 chr1 249250621 + 179365955 179366941 L1PA13 3608 - 2565 3512 53514 170 21 17 17 0 3 67 1 3 9 8 6 120 2 0 97 1 0 18 2 0 15 2 1 4 1 0 20 21 16 15 8 6 11 1 0 13 1 0 124 14 12 61 28 17 24 3 0 14 1 0 26 4 1 23 6 4 13 chain 99821 chr1 249250621 + 179368319 179369699 L1PB1 5432 + 4073 5424 36822 295 1 2 10 0 1 246 2 0 183 2 6 284 3 0 17 3 0 21 1 0 9 1 0 9 6 2 9 2 0 52 1 0 18 1 0 43 0 4 12 1 0 4 2 0 13 33 21 12 3 1 23 1 0 21 1 0 8 6 5 16 1 0 4 chain 49547 chr1 249250621 + 179374054 179374665 L1PA8 5853 - 0 607 59358 93 1 0 16 1 0 56 2 1 79 2 0 46 1 0 41 0 1 202 0 1 71 chain 18707 chr1 249250621 + 179385093 179386687 L1MA4 2864 - 65 1203 51507 30 6 4 11 96 61 21 3 0 46 16 20 14 1 0 66 13 12 15 46 49 43 59 73 94 429 7 30 13 14 71 1 0 95 21 11 158 13 12 91 12 11 67 1 0 12 chain 148611 chr1 249250621 + 179387136 179388800 SVA_D 2077 - 11 2077 24803 724 0 2 25 0 1 28 0 396 13 5 5 482 0 3 387 chain 1760 chr1 249250621 + 179390299 179390449 L1MA4 2864 - 1348 1498 51507 150 chain 92298 chr1 249250621 + 179402182 179403337 L1PA8 5853 - 2673 3851 38778 60 0 1 151 0 5 30 0 4 21 3 2 305 0 1 212 0 8 150 0 3 95 7 8 105 0 1 16 chain 203188 chr1 249250621 + 179403337 179405993 L1PA8 5853 + 3193 5853 18979 144 0 1 56 1 0 382 0 9 7 5 7 599 0 1 35 0 1 77 7 3 81 8 10 107 9 14 279 7 3 75 1 0 3 2 0 60 0 1 176 0 2 118 0 1 119 1 0 44 2 0 60 4 3 10 1 0 9 1 0 5 2 1 44 3 2 18 5 4 89 chain 32348 chr1 249250621 + 179411942 179412404 LTR3A 482 - 33 482 80276 42 1 0 147 45 32 118 0 1 109 chain 59480 chr1 249250621 + 179421046 179423253 THE1B-int 1605 + 0 1599 53124 306 2 3 123 0 25 65 1424 784 231 1 0 34 0 7 21 chain 30214 chr1 249250621 + 179421542 179421859 AluYb8 318 + 1 318 84144 317 chain 22722 chr1 249250621 + 179423259 179423603 THE1B 368 + 0 368 116972 40 0 15 114 1 0 25 52 62 112 chain 522027 chr1 249250621 + 179429188 179435384 L1PA5 6144 - 9 6144 4957 332 5 0 47 2 0 278 1 0 506 0 1 279 1 0 4 0 1 338 0 6 634 0 1 33 1 0 164 86 10 254 0 3 101 0 1 828 2 1 7 0 3 176 0 3 623 0 1 265 1 0 64 9 0 148 0 2 886 5 19 116 chain 19247 chr1 249250621 + 179446465 179446809 THE1B 368 - 24 368 129389 86 4 0 15 63 66 54 14 15 108 chain 28338 chr1 249250621 + 179448937 179449290 THE1B-int 1605 - 1235 1588 91808 353 chain 19849 chr1 249250621 + 179449320 179449669 THE1B 368 - 15 368 127657 50 1 0 49 73 77 60 5 6 111 chain 70419 chr1 249250621 + 179450123 179450912 L1PA5 6144 - 3 791 48205 489 1 0 299 chain 14875 chr1 249250621 + 179479906 179480177 L1PB1 5432 - 13 261 141698 15 1 0 13 1 0 21 1 0 23 6 4 11 1 0 4 3 1 16 9 0 15 3 0 16 1 0 43 2 1 15 3 2 48 chain 298116 chr1 249250621 + 179482660 179487095 L1PBa1 4058 - 18 4041 13525 42 1 0 17 1 0 7 1 0 6 8 4 10 2 1 12 1 0 22 1 0 4 2 1 19 2 0 15 8 0 7 1 0 22 3 1 108 2 0 41 1 0 19 21 19 114 11 2 113 1 0 129 0 1 119 0 5 266 0 1 116 0 1 33 1 2 89 16 17 9 0 1 39 0 4 122 0 7 6 14 0 22 10 6 68 0 13 23 1 0 444 378 0 214 0 1 8 2 1 65 1 0 494 3 0 5 11 14 149 20 1 22 0 23 278 1 0 53 5 1 10 0 3 43 16 18 4 1 0 143 1 0 83 1 0 31 0 2 161 21 18 10 10 0 19 chain 38118 chr1 249250621 + 179488905 179489485 L1PA13 3608 - 120 691 71960 22 1 0 18 2 0 7 11 9 14 0 1 13 22 20 28 1 0 21 1 0 62 2 0 46 0 4 63 1 0 15 1 0 17 2 1 210 chain 32768 chr1 249250621 + 179492868 179493415 L1PB1 5432 - 10 544 79579 15 5 4 12 1 0 14 10 9 22 2 0 14 1 0 5 3 1 19 15 5 8 2 0 14 1 0 44 1 0 12 8 7 47 0 14 10 1 0 8 1 0 23 5 0 8 1 4 215 chain 501672 chr1 249250621 + 179504363 179510596 L1PA6 6164 - 2 6161 6745 732 0 1 30 0 1 177 12 23 824 0 4 24 4 0 32 0 1 123 0 2 100 1 11 131 0 7 319 0 1 429 0 1 55 0 1 796 0 4 641 0 1 299 2 1 126 1 0 358 0 4 86 0 17 58 21 0 151 0 6 16 52 0 3 23 0 63 3 0 5 5 10 39 19 0 85 34 7 354 chain 518711 chr1 249250621 + 179534720 179541332 L1PA6 6164 - 11 6160 5306 399 0 4 434 0 4 633 1 0 560 0 1 322 0 12 14 1 2 526 0 4 844 10 19 48 1 2 78 0 1 305 1 0 388 0 1 32 520 0 465 0 1 230 0 17 240 1 0 48 0 2 279 0 2 232 chain 44363 chr1 249250621 + 179539318 179539831 MER9a1 513 - 0 513 63739 51 1 0 185 0 1 276 chain 292687 chr1 249250621 + 179570418 179574536 L1PB1 5432 - 19 3987 13845 10 16 0 12 1 0 21 1 0 24 2 0 14 1 0 4 3 1 22 22 10 58 1 0 15 1 2 50 20 14 9 1 0 9 2 0 24 3 0 5 8 9 113 0 6 51 299 0 114 1 4 180 4 0 19 0 181 700 4 6 16 1 2 338 1 2 299 1 0 227 1 0 55 0 1 293 9 6 293 0 4 267 1 4 300 0 1 22 0 1 150 chain 18025 chr1 249250621 + 179578351 179578642 Tigger4b 360 - 2 337 132792 19 0 50 41 1 0 4 0 1 165 42 37 12 1 0 6 chain 8333 chr1 249250621 + 179578659 179578763 MLT1A 405 + 297 404 169208 40 0 3 64 chain 36266 chr1 249250621 + 179594948 179595358 L1PA3long 6157 + 5746 6157 74542 260 1 2 149 chain 14603 chr1 249250621 + 179601921 179602162 MER47A 366 - 13 273 142574 33 38 54 155 1 4 14 chain 29612 chr1 249250621 + 179614211 179614519 AluYa5 310 - 2 310 86170 308 chain 205535 chr1 249250621 + 179615480 179617739 L1PA3long 6157 + 3885 6157 18823 61 0 1 407 0 4 801 0 5 844 0 3 146 chain 228758 chr1 249250621 + 179640748 179644392 L1PB1 5432 - 10 3184 17370 18 1 0 13 0 1 20 1 0 24 5 4 10 1 0 5 3 1 18 23 12 15 1 0 44 7 6 10 2 1 52 2 0 9 8 4 11 1 0 6 1 0 24 47 11 83 4 6 84 0 5 127 1 0 147 0 14 10 3 0 14 0 9 14 2 1 64 1 0 737 0 2 5 6 4 16 0 1 26 3 5 30 456 0 55 0 1 101 0 3 134 0 1 103 1 2 20 0 1 114 0 4 150 1 0 3 2 0 74 0 4 99 5 4 277 0 3 46 2 1 219 1 10 22 chain 29285 chr1 249250621 + 179644408 179644713 AluYk12 309 - 4 309 87638 305 chain 28803 chr1 249250621 + 179651380 179651746 L1PA7 6471 - 5 372 89882 9 6 0 5 0 1 185 0 2 65 0 4 96 chain 536206 chr1 249250621 + 179653187 179659330 L1PA5 6144 - 3 6144 3421 843 1 5 192 0 1 363 0 2 1014 0 1 1414 2 1 1020 0 1 114 9 0 843 2 1 326 chain 531808 chr1 249250621 + 179663192 179669564 L1PA7 6471 + 0 6470 3986 196 6 8 181 0 4 22 0 1 762 0 10 550 0 4 18 0 4 153 1 0 122 1 7 390 0 1 199 1 0 69 0 3 182 1 5 205 0 4 375 3 0 74 0 1 13 4 16 21 3 7 288 0 1 101 5 6 246 0 1 23 19 10 236 0 2 123 0 2 22 1 13 132 0 4 124 0 1 253 0 4 274 0 5 54 0 1 84 1 8 174 0 4 77 0 1 265 0 1 305 1 6 12 chain 7553 chr1 249250621 + 179674772 179674876 MER65C 458 + 300 411 173844 14 1 0 50 0 8 39 chain 11157 chr1 249250621 + 179708597 179708789 MER30 238 + 38 237 155607 62 12 28 24 0 6 16 13 1 15 3 0 47 chain 5055 chr1 249250621 + 179720866 179720927 L1MB1 2102 + 144 206 194575 4 0 1 57 chain 43690 chr1 249250621 + 179744068 179744679 MER51A 677 - 16 677 64580 78 12 4 39 15 8 50 10 11 238 8 72 161 chain 111002 chr1 249250621 + 179805207 179806630 LTR12C 1709 - 0 1709 33929 84 13 12 344 0 3 38 11 4 31 0 207 149 1 0 62 0 118 165 40 5 21 0 2 464 chain 20056 chr1 249250621 + 179809785 179810022 L1PA7 6471 + 6216 6452 126949 195 1 0 41 chain 25358 chr1 249250621 + 179817983 179818287 AluYk4 311 + 0 298 102904 132 12 6 160 chain 24829 chr1 249250621 + 179849977 179850276 AluY 311 + 10 311 105726 41 1 3 257 chain 8255 chr1 249250621 + 179895146 179895266 Tigger3c 601 + 381 503 169656 69 9 11 42 chain 4894 chr1 249250621 + 179895538 179895596 MER21C 908 - 335 394 196339 37 0 1 21 chain 73029 chr1 249250621 + 179912079 179912870 L1PA2 6032 + 5240 6031 47012 791 chain 5123 chr1 249250621 + 179965585 179965654 L1MA8 2339 - 71 142 193848 11 1 0 51 0 3 6 chain 4107 chr1 249250621 + 179971773 179971956 L1MB7 1623 + 1379 1534 205812 43 1 0 4 48 30 11 13 12 14 4 0 6 23 19 16 chain 95020 chr1 249250621 + 179975755 179976909 L1PA7 6471 - 12 1168 38090 53 1 0 83 7 0 7 5 13 115 2 0 475 0 1 9 2 3 79 1 4 309 1 0 5 chain 24992 chr1 249250621 + 179984385 179984660 AluYf4 310 - 27 302 104847 275 chain 21488 chr1 249250621 + 179994743 179995049 L1PA8 5853 + 5554 5853 122187 10 4 3 42 3 1 72 1 0 11 4 3 44 2 1 19 1 0 93 chain 3205 chr1 249250621 + 179998628 179998819 L1MB3 1562 - 18 179 220852 16 129 101 6 1 0 12 1 0 26 chain 32457 chr1 249250621 + 180013619 180013972 L1PA4 6152 + 5798 6151 80098 353 chain 3188 chr1 249250621 + 180017886 180017922 MLT1-int 490 + 101 137 221182 36 chain 22796 chr1 249250621 + 180024681 180024979 AluYk4 311 - 6 311 116600 29 0 2 71 0 4 43 6 7 17 1 0 95 0 1 36 chain 16958 chr1 249250621 + 180069902 180070119 THE1A 353 - 132 353 135705 111 1 4 38 0 1 67 chain 2837 chr1 249250621 + 180122701 180122744 MER115 684 + 603 647 228135 4 1 0 14 0 2 24 chain 20924 chr1 249250621 + 180178298 180178655 THE1C 375 + 0 375 124197 13 2 0 34 0 6 6 26 27 93 0 3 18 32 42 44 0 1 6 1 0 82 chain 28809 chr1 249250621 + 180183847 180184150 AluYh9 303 - 0 303 89851 303 chain 3171 chr1 249250621 + 180213182 180213217 MIRb 242 + 107 142 221534 35 chain 19622 chr1 249250621 + 180271524 180271738 L1PA4 6152 - 3676 3890 128054 214 chain 324663 chr1 249250621 + 180271738 180275394 L1PA4 6152 + 2485 6152 12409 1863 0 4 174 0 1 408 0 4 163 1 0 192 1 0 458 0 3 62 0 1 334 chain 28007 chr1 249250621 + 180275962 180276352 L1MA2 4263 + 3732 4110 92975 70 3 0 71 0 1 82 11 9 93 7 0 46 1 0 6 chain 35623 chr1 249250621 + 180288945 180289489 L1MA2 4263 - 158 687 75379 35 19 12 93 31 29 130 2 0 106 0 1 37 1 0 75 4 0 11 chain 30103 chr1 249250621 + 180293000 180293313 AluYb8 318 - 5 318 84482 313 chain 534927 chr1 249250621 + 180302706 180308827 L1PA5 6144 + 35 6144 3603 48 0 1 145 13 12 707 0 4 2255 0 7 308 1 3 74 0 1 749 0 4 140 25 0 13 8 3 149 1 0 82 0 4 402 2 0 853 1 0 145 chain 5188 chr1 249250621 + 180318294 180318371 U6 107 - 0 87 193157 7 0 2 23 0 10 39 2 0 6 chain 20191 chr1 249250621 + 180337467 180337761 L1PA14 3548 - 92 376 126556 59 1 0 4 1 0 15 4 2 33 6 2 9 1 0 110 2 1 49 chain 157925 chr1 249250621 + 180358140 180359921 L1PA4 6152 - 0 1784 23603 155 1 3 26 0 1 1599 chain 21222 chr1 249250621 + 180368417 180368702 AluSq4 311 - 25 311 123131 23 0 1 66 4 7 62 7 4 123 chain 32509 chr1 249250621 + 180377445 180377813 L1PA3long 6157 + 5788 6157 80008 226 3 4 139 chain 18813 chr1 249250621 + 180418805 180419039 L1PA6 6164 + 5912 6147 130638 102 3 4 129 chain 274163 chr1 249250621 + 180421112 180424664 L1PA7 6471 + 3182 6466 14971 213 316 0 154 0 4 42 0 1 239 0 1 25 3 0 383 0 20 457 0 6 134 7 24 737 0 5 510 1 0 322 2 0 7 chain 8475 chr1 249250621 + 180445395 180445522 MER85 139 - 0 139 168427 20 15 27 92 chain 22380 chr1 249250621 + 180474386 180475231 MER50 708 + 0 686 118586 49 17 11 45 0 1 44 12 16 81 466 307 72 27 28 32 chain 13904 chr1 249250621 + 180478223 180478774 LTR12C 1709 + 776 1434 144902 42 1 41 67 50 8 62 291 400 38 chain 8066 chr1 249250621 + 180488153 180488253 HY3 101 - 1 99 170665 62 2 0 36 chain 26067 chr1 249250621 + 180527904 180528269 THE1A 353 + 0 353 99765 105 6 5 123 14 5 50 4 0 5 0 2 58 chain 39515 chr1 249250621 + 180528269 180528761 THE1A-int 1579 + 0 497 70006 163 6 8 88 0 4 34 1 0 200 chain 2947 chr1 249250621 + 180535042 180535073 U2 167 - 136 167 226136 31 chain 25263 chr1 249250621 + 180553057 180553377 AluYk4 311 + 0 302 103401 132 24 6 164 chain 30501 chr1 249250621 + 180556994 180557515 LTR10E 629 + 0 585 83427 18 1 0 14 0 12 116 15 14 116 0 49 31 11 20 36 63 62 46 1 0 34 2 0 17 chain 23806 chr1 249250621 + 180565874 180566155 AluSz6 309 + 10 291 111443 281 chain 198447 chr1 249250621 + 180613814 180616415 Charlie3 2679 - 0 2636 19324 76 3 0 116 6 7 122 0 1 164 0 3 295 4 2 6 0 2 48 1 4 58 0 4 70 0 9 83 0 3 27 4 9 62 1 0 210 6 7 71 11 16 226 0 1 46 5 1 18 0 7 92 0 3 594 0 1 141 4 0 31 chain 24166 chr1 249250621 + 180618279 180618587 AluY 311 + 0 303 109393 133 12 6 70 0 1 93 chain 257034 chr1 249250621 + 180625853 180630702 L1MA3 4352 - 489 4313 15878 184 0 1 111 0 1 179 2 0 17 8 55 102 0 1 29 0 3 99 1 0 4 0 1 27 0 1 258 0 3 62 0 1 140 6 0 238 1 0 33 1 0 332 335 9 34 5 9 137 816 62 12 1 0 67 13 12 111 1 0 161 5 7 23 1 0 44 17 31 101 7 11 40 1 0 29 2 1 205 1 0 6 3 1 95 2 0 255 5 8 41 32 29 41 1 0 75 16 3 15 2 0 17 5 24 40 1 5 26 13 19 20 1 0 41 46 28 47 chain 3039 chr1 249250621 + 180634523 180634557 MER1B 344 - 268 302 224211 34 chain 18096 chr1 249250621 + 180638820 180639061 MER44A 345 - 16 265 132604 10 0 2 203 1 7 27 chain 28713 chr1 249250621 + 180649797 180650276 L1MA5A 2387 + 1852 2288 90280 12 8 2 97 5 7 63 3 0 26 1 2 46 1 0 50 2 0 29 1 0 27 8 5 12 30 0 58 chain 324524 chr1 249250621 + 180652110 180655738 L1PA4 6152 - 1 3619 12416 148 0 7 694 0 4 238 4 0 289 21 0 506 0 3 841 1 0 238 0 1 511 0 1 137 chain 3475 chr1 249250621 + 180665751 180665801 L1M2 1805 - 291 338 215721 42 3 0 5 chain 304298 chr1 249250621 + 180668349 180671616 L1HS 6032 - 0 3548 13226 2593 2 283 672 chain 118783 chr1 249250621 + 180679339 180680758 SVA_C 1631 - 3 1631 31500 591 1 0 7 0 91 104 40 0 71 1 2 36 0 116 535 0 25 19 1 18 13 chain 4764 chr1 249250621 + 180686987 180687067 MADE1 96 - 0 96 197766 23 15 31 42 chain 37554 chr1 249250621 + 180695144 180695645 LTR12 884 + 0 750 72749 25 1 0 178 0 157 20 2 0 76 0 1 91 0 103 85 9 0 14 chain 34468 chr1 249250621 + 180696812 180697249 MER41A 554 - 107 554 76963 40 1 0 93 1 0 118 0 10 43 0 1 47 0 1 94 chain 13378 chr1 249250621 + 180726957 180727192 Tigger4 2445 + 239 448 146790 54 29 9 48 18 12 86 chain 7950 chr1 249250621 + 180727857 180727947 U6 107 + 0 101 171329 58 0 11 32 chain 311135 chr1 249250621 + 180727953 180731418 L1PA4 6152 + 2688 6152 12954 496 0 1 28 0 1 480 0 1 131 0 1 783 1 0 450 4 0 1092 chain 26798 chr1 249250621 + 180738717 180739119 L1MA2 4263 - 150 547 96987 9 1 0 37 16 9 26 0 4 53 2 4 5 1 0 9 2 1 47 0 2 101 3 0 90 chain 17997 chr1 249250621 + 180749704 180749918 AluY 311 + 82 297 132864 50 0 1 164 chain 2947 chr1 249250621 + 180765888 180765919 U2 167 + 0 31 226120 31 chain 148379 chr1 249250621 + 180800536 180802309 L1PA7 6471 - 4 1813 24830 10 1 0 711 0 1 116 0 6 368 0 1 92 5 4 36 3 31 218 0 1 37 0 1 176 chain 33195 chr1 249250621 + 180802309 180802747 L1P2 5180 + 1989 2419 78657 72 4 3 263 12 1 64 0 4 23 chain 29545 chr1 249250621 + 180809077 180809389 AluYb8 318 + 0 312 86435 312 chain 567742 chr1 249250621 + 180835947 180841979 L1HS 6032 - 0 6032 44 6032 chain 19711 chr1 249250621 + 180872177 180872520 THE1B 368 - 2 368 128064 47 14 13 66 37 50 21 1 0 24 0 2 7 18 29 5 1 0 102 chain 19292 chr1 249250621 + 180873213 180873560 THE1C 375 + 0 371 129264 47 0 6 17 14 16 18 20 40 10 20 0 22 13 30 144 1 0 21 chain 126094 chr1 249250621 + 180928013 180929591 THE1A-int 1579 - 0 1579 29065 72 1 0 65 2 1 10 8 7 117 1 0 82 13 12 62 10 13 837 0 1 190 0 2 108 chain 23990 chr1 249250621 + 180929591 180929938 THE1A 353 - 0 353 110381 97 0 7 8 0 1 5 3 2 32 1 0 20 7 9 5 1 0 57 2 1 109 chain 25535 chr1 249250621 + 180986240 180986535 AluY 311 + 0 289 102078 126 6 0 163 chain 117870 chr1 249250621 + 181014787 181016207 LTR12C 1709 + 0 1709 31843 272 7 11 17 0 1 83 1 0 47 2 1 77 4 5 18 0 1 8 0 1 108 0 278 92 0 2 90 1 0 112 0 4 481 chain 54598 chr1 249250621 + 181034108 181035423 MER4E1 777 + 0 777 55968 24 0 1 160 582 0 57 2 1 4 0 1 81 0 19 39 0 5 41 0 1 108 1 9 137 0 14 15 5 1 59 chain 24103 chr1 249250621 + 181036896 181037195 AluY 311 + 0 294 109730 64 4 1 56 3 0 5 0 1 167 chain 2745 chr1 249250621 + 181120523 181120564 MIRb 242 + 68 107 229546 6 2 0 33 chain 7428 chr1 249250621 + 181123880 181123971 MLT2B4 540 + 0 91 174595 91 chain 4123 chr1 249250621 + 181145653 181145718 MLT1C 463 + 27 91 205612 28 7 6 30 chain 81933 chr1 249250621 + 181155214 181156181 L1PA7 6471 - 56 1025 42789 78 0 1 251 2 1 93 2 0 109 1 4 178 0 2 85 1 0 167 chain 24932 chr1 249250621 + 181162791 181163157 THE1B 368 + 0 366 105150 15 2 0 25 0 5 45 19 20 61 4 3 117 3 0 75 chain 121785 chr1 249250621 + 181163159 181164714 THE1B-int 1605 + 0 1592 30449 78 0 1 147 0 1 205 4 19 557 0 1 4 1 0 5 6 8 210 10 23 263 0 5 65 chain 48574 chr1 249250621 + 181166049 181166576 L1PA3long 6157 + 5630 6157 60055 527 chain 364177 chr1 249250621 + 181166579 181170876 L1PA6 6164 + 1854 6162 11254 35 0 9 388 6 5 41 14 0 250 0 4 397 0 1 205 0 1 175 0 4 57 7 0 272 2 0 468 1 0 198 0 8 94 0 1 417 2 1 433 0 4 166 0 2 342 0 3 327 chain 70931 chr1 249250621 + 181194495 181195258 L1PA2 6032 - 0 763 47915 763 chain 76106 chr1 249250621 + 181195258 181196082 L1PA2 6032 + 4425 5249 45418 824 chain 76332 chr1 249250621 + 181211557 181212425 L1PA5 6144 - 0 869 45300 856 0 1 12 chain 76765 chr1 249250621 + 181215130 181216213 MER11A 1151 + 0 1147 45099 57 0 99 74 2 1 63 4 0 134 15 16 94 0 1 234 0 2 22 7 34 5 2 0 26 43 0 22 18 0 36 0 1 60 6 7 159 chain 87728 chr1 249250621 + 181220904 181222251 HERVK11-int 2540 + 1044 2303 40474 21 2 0 56 10 9 49 1 0 8 3 0 22 38 28 16 12 1 35 21 1 45 4 7 252 0 3 131 6 1 106 1 0 189 1 0 76 1 0 6 1 6 122 90 47 22 chain 73563 chr1 249250621 + 181223369 181224368 MER11A 1151 + 6 1151 46753 73 0 8 21 0 2 33 0 93 58 4 0 18 0 4 127 0 1 94 0 1 145 5 6 83 4 6 31 0 26 15 0 23 12 20 3 31 0 1 62 0 1 123 0 4 40 chain 394701 chr1 249250621 + 181235110 181239969 L1PA7 6471 - 2 4958 10290 11 2 1 133 0 8 8 9 1 407 0 2 47 13 130 100 1 0 672 1 0 27 0 2 266 0 2 328 26 11 54 1 2 239 13 9 62 0 1 110 2 0 646 0 6 533 2 1 106 0 1 4 1 0 354 15 0 14 0 5 533 0 1 119 chain 548311 chr1 249250621 + 181244998 181251128 L1PA4 6152 + 2 6151 1659 1925 11 27 307 0 2 919 0 1 2968 chain 25176 chr1 249250621 + 181254317 181254713 L1MA1 4479 + 3746 4122 103867 9 1 0 71 1 0 9 13 10 14 1 0 88 22 11 120 1 0 29 2 0 15 chain 11088 chr1 249250621 + 181271449 181271581 MER85 139 + 8 138 155858 125 2 0 5 chain 16889 chr1 249250621 + 181274019 181274326 Tigger4b 360 - 0 334 135869 53 6 5 97 0 9 26 5 4 23 34 37 38 11 28 14 chain 5962 chr1 249250621 + 181308604 181308673 L1MB3 1562 - 278 347 185582 69 chain 3074 chr1 249250621 + 181348421 181348480 L1MEc 1507 + 981 1027 223458 7 12 0 7 1 0 32 chain 12527 chr1 249250621 + 181353896 181354034 L1PA3long 6157 + 6018 6157 150132 127 0 1 11 chain 25111 chr1 249250621 + 181497198 181497558 THE1A 353 + 0 353 104224 40 0 2 36 19 12 19 4 3 90 1 0 151 chain 132320 chr1 249250621 + 181497558 181499134 THE1A-int 1579 + 0 1579 27559 20 5 7 802 0 1 749 chain 25283 chr1 249250621 + 181499134 181499489 THE1A 353 + 0 353 103302 102 22 21 47 0 1 31 1 0 17 1 0 134 chain 22792 chr1 249250621 + 181511535 181511907 THE1C 375 + 0 375 116619 14 2 0 33 38 39 99 4 5 36 9 11 9 0 1 128 chain 10158 chr1 249250621 + 181521807 181521928 L1PA8A 6298 - 7 129 159815 99 1 2 21 chain 6011 chr1 249250621 + 181541098 181541228 MER53 195 + 38 194 185128 15 7 0 20 27 53 8 0 7 53 chain 26533 chr1 249250621 + 181556737 181557028 AluYk4 311 + 0 291 97923 291 chain 40199 chr1 249250621 + 181582686 181583314 Tigger2 2703 - 1275 1901 69032 95 18 11 122 7 6 13 1 2 12 50 49 59 1 0 91 0 5 38 0 2 121 chain 3597 chr1 249250621 + 181605416 181605456 MIR 256 + 87 127 213697 40 chain 2837 chr1 249250621 + 181613857 181614159 LTR16A1 462 - 94 407 228136 19 234 247 27 7 5 15 chain 21472 chr1 249250621 + 181622344 181622693 THE1B 368 + 0 368 122245 136 23 31 5 0 1 25 35 45 125 chain 27764 chr1 249250621 + 181623838 181624143 AluYf5 307 + 0 305 93825 305 chain 155085 chr1 249250621 + 181658131 181659974 L1PA7 6471 - 17 1866 23968 132 3 0 6 9 8 296 0 2 215 8 10 161 0 2 950 0 4 63 chain 33206 chr1 249250621 + 181784148 181784514 L1PA4 6152 + 5777 6143 78871 366 chain 50401 chr1 249250621 + 181786459 181787126 PABL_A 660 + 0 660 58713 167 26 17 254 0 1 76 1 0 61 0 2 82 chain 15940 chr1 249250621 + 181790020 181790354 L1PB1 5432 + 5120 5422 138546 18 1 0 9 2 1 10 15 9 53 2 1 16 1 0 42 2 1 16 1 0 5 45 30 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 4038 chr1 249250621 + 181798797 181798893 HERV9-int 5642 + 5550 5622 206814 33 2 1 14 28 5 19 chain 20224 chr1 249250621 + 181802015 181802845 LTR12C 1709 + 772 1557 126458 31 17 53 212 529 449 24 1 0 16 chain 3166 chr1 249250621 + 181802275 181802316 LTR12C 1709 + 1027 1068 167487 41 chain 468336 chr1 249250621 + 181818055 181824310 L1PA8A 6298 + 32 6289 8095 8 1 0 18 32 21 21 3 0 19 1 0 4 2 0 5 7 1 19 1 0 9 2 1 12 1 0 4 0 16 8 10 0 6 7 4 13 53 44 48 1 0 6 17 11 60 19 17 14 22 19 229 1 10 218 0 1 55 0 3 146 17 21 7 6 0 10 3 1 76 5 0 405 2 0 56 0 1 154 9 10 475 0 5 47 4 6 89 0 1 33 0 1 10 8 1 58 0 1 182 0 9 31 0 1 346 8 10 150 1 4 69 1 0 35 0 3 36 1 4 30 0 1 397 0 1 82 0 2 623 0 2 56 0 3 210 6 5 116 1 5 510 0 6 10 0 1 53 0 1 725 chain 29444 chr1 249250621 + 181829153 181829464 AluYa5 310 + 0 310 86883 132 1 0 178 chain 6066 chr1 249250621 + 181831797 181831977 L1MB3 1562 + 1231 1421 184695 49 1 0 7 85 96 38 chain 394106 chr1 249250621 + 181842132 181847550 L1PB1 5432 + 33 5419 10314 153 7 2 112 6 9 92 2 0 5 5 4 36 0 1 31 6 10 304 0 3 182 0 1 43 1 2 241 23 29 110 2 0 5 14 0 193 1 6 73 0 1 265 4 5 34 27 0 6 0 27 481 0 1 38 11 9 168 0 3 124 1 0 66 0 1 302 6 1 131 1 0 183 5 1 187 16 18 877 10 12 82 0 2 88 9 1 11 2 10 257 5 1 6 0 4 19 2 3 12 3 0 7 1 0 14 1 0 9 27 20 53 2 1 16 1 0 44 1 0 15 1 0 4 19 8 7 0 2 10 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 2 1 14 chain 7898 chr1 249250621 + 181849647 181849750 L1PB1 5432 + 4985 5088 171662 103 chain 3954 chr1 249250621 + 181849911 181849987 L1PB1 5432 + 5147 5217 208077 9 20 14 47 chain 4827 chr1 249250621 + 181850009 181850067 L1PB1 5432 + 5236 5293 197046 45 1 0 12 chain 4477 chr1 249250621 + 181850092 181850178 L1PB1 5432 + 5308 5388 201042 19 2 0 5 1 0 14 9 7 17 1 0 18 chain 310226 chr1 249250621 + 181851368 181855203 L1P2 5180 + 2 3851 12995 148 2 1 43 1 0 53 1 0 33 12 4 177 1 0 54 0 14 258 1 0 6 1 0 134 0 4 214 6 7 35 0 13 12 8 1 615 1 0 183 0 1 274 0 1 164 12 11 5 0 1 48 1 5 104 12 8 544 1 0 6 2 0 81 0 5 23 0 1 222 1 0 336 chain 147597 chr1 249250621 + 181855203 181856877 L1PA6 6164 - 957 2635 24895 835 0 4 839 chain 82006 chr1 249250621 + 181856879 181857834 L1PA6 6164 + 5203 6159 42755 112 0 1 843 chain 112133 chr1 249250621 + 181861404 181862763 L1PA7 6471 + 5079 6452 33628 523 0 4 221 6 16 51 0 2 44 2 0 58 0 2 309 1 0 46 4 3 94 chain 44247 chr1 249250621 + 181868893 181869472 MER4A1_ 611 + 0 598 63884 45 0 1 76 0 2 258 16 21 39 0 11 145 chain 324658 chr1 249250621 + 181889575 181893756 L1PA7 6471 + 3 6459 12410 223 39 38 104 1 2 40 0 2 194 7 0 7 3 10 55 3 4 220 32 2264 67 0 4 266 4 2 426 0 4 163 0 1 461 4 5 94 7 15 139 0 4 449 0 1 208 0 1 145 1 0 89 2 4 56 10 4 49 0 13 88 0 1 271 0 4 44 10 13 178 1 3 21 chain 134422 chr1 249250621 + 181912598 181914943 L1PA13 3608 + 1518 3548 27127 157 0 1 37 312 0 60 5 7 86 9 10 27 4 3 428 0 1 233 3 4 41 2 0 27 5 4 241 23 39 49 5 4 41 0 2 33 0 1 4 8 9 37 7 8 48 1 0 12 24 25 26 0 4 46 2 0 62 1 0 55 1 0 4 6 4 46 10 6 18 2 1 18 0 3 7 18 7 11 17 10 10 4 1 12 chain 66704 chr1 249250621 + 181923172 181923937 L1PA4 6152 - 1 772 49785 396 0 3 354 1 4 14 chain 56063 chr1 249250621 + 181923999 181924621 SVA_B 1603 + 920 1603 55083 38 8 69 576 chain 485697 chr1 249250621 + 181925263 181931489 L1PA7 6471 - 14 6471 7533 143 0 3 26 0 1 57 4 9 208 10 1 16 0 3 275 0 3 58 5 6 20 0 7 123 20 1 140 1 0 129 0 2 235 13 6 100 6 24 183 1 9 349 0 2 86 0 1 395 11 0 173 0 2 87 0 4 292 14 14 151 0 1 8 0 4 207 0 4 181 0 4 22 0 7 41 5 10 145 0 1 42 0 12 103 0 1 86 2 3 67 0 4 7 11 17 182 0 182 58 0 1 26 66 0 83 0 3 152 0 2 61 0 1 21 10 10 98 0 1 41 0 4 140 1 8 535 0 1 98 10 37 318 0 5 68 chain 14477 chr1 249250621 + 181946172 181946336 L1PA4 6152 + 5988 6151 142960 8 1 0 155 chain 282933 chr1 249250621 + 181946355 181950631 L1PA8 5853 + 1886 5853 14475 109 0 1 22 8 0 17 0 52 187 7 11 51 2 40 95 10 14 5 0 2 44 1 11 157 2 1 70 1 0 4 52 0 3 310 0 93 1 0 55 7 11 649 0 1 147 0 4 35 5 4 31 0 1 92 1 3 7 0 1 186 5 10 225 1 0 31 6 8 44 4 10 29 0 5 543 20 21 66 1 0 289 105 7 88 18 8 78 1 0 44 2 0 71 1 0 8 43 79 87 chain 3275 chr1 249250621 + 181947151 181947199 L1PA8 5853 + 5513 5561 120883 48 chain 18284 chr1 249250621 + 181947203 181947471 L1PA8 5853 + 5564 5843 120883 44 2 0 68 16 13 40 15 31 83 chain 64254 chr1 249250621 + 181974425 181975196 L1PA5 6144 - 12 746 50896 432 42 4 137 0 1 160 chain 171856 chr1 249250621 + 181976979 181979316 L1PB1 5432 + 1939 4283 21834 158 4 10 67 0 1 319 6 0 160 0 5 169 24 11 29 6 0 62 0 4 73 2 1 5 0 1 222 2 1 128 0 5 32 1 6 283 9 10 28 10 15 217 4 6 239 2 1 76 chain 135753 chr1 249250621 + 181979316 181980893 SVA_B 1603 + 8 1603 26887 13 15 0 19 18 1 737 1 0 74 1 0 13 1 0 14 4 0 42 4 0 40 0 24 5 0 37 576 chain 21632 chr1 249250621 + 181995567 181995826 AluY 311 + 30 299 121646 102 0 1 140 0 9 17 chain 73808 chr1 249250621 + 182014379 182015392 MER11A 1151 - 0 1151 46612 40 0 4 112 13 14 44 4 5 11 0 1 58 15 48 5 0 1 118 5 6 145 0 1 94 3 4 112 0 2 32 4 0 63 0 4 24 5 6 19 8 0 24 0 99 55 chain 14446 chr1 249250621 + 182033269 182033452 L1PA10 4194 - 33 212 143062 11 1 0 33 3 0 135 chain 67666 chr1 249250621 + 182123220 182124022 L1PA7 6471 + 5606 6466 49378 8 0 3 92 0 1 426 0 1 178 0 1 40 0 47 49 0 5 9 chain 3181 chr1 249250621 + 182124743 182124783 MER33 330 - 247 288 221286 19 0 1 21 chain 4980 chr1 249250621 + 182162706 182162780 MLT1B 390 - 302 383 195359 23 0 10 41 3 0 7 chain 525298 chr1 249250621 + 182187600 182194499 L1PA7 6471 + 2 6464 4657 410 25 6 26 4 8 293 0 2 28 0 1 5 2 1 229 0 2 278 8 9 22 18 20 288 0 1 403 0 1 125 452 3 87 0 1 304 0 1 4 1 0 66 8 9 315 0 1 147 1 5 130 0 4 598 0 1 271 1 0 518 1 0 48 0 4 308 1 0 116 11 5 177 2 1 47 10 11 272 0 3 54 0 3 28 0 1 61 4 5 42 0 1 477 0 1 5 20 21 148 chain 40440 chr1 249250621 + 182189764 182190214 L1PA3long 6157 + 5706 6157 68676 300 1 2 149 chain 8040 chr1 249250621 + 182208493 182208706 MSTC 436 - 11 223 170815 95 98 97 20 chain 4582 chr1 249250621 + 182235720 182235781 MLT1A0 366 + 0 64 199846 22 0 2 23 0 1 16 chain 23756 chr1 249250621 + 182250152 182250641 L1PB1 5432 - 5 421 111736 5 2 0 18 1 0 13 12 14 7 1 0 24 2 0 14 1 0 5 2 0 19 25 12 15 1 0 45 1 0 17 4 1 51 2 0 21 10 8 24 55 11 92 chain 25841 chr1 249250621 + 182261431 182261799 THE1B 368 - 0 368 100695 49 5 13 18 2 0 96 2 0 15 6 5 46 3 0 126 chain 28742 chr1 249250621 + 182289332 182289636 AluYa5 310 - 6 310 90163 304 chain 21390 chr1 249250621 + 182298210 182298534 THE1B 368 - 26 368 122543 99 35 45 26 1 0 67 6 0 50 0 15 40 chain 5442 chr1 249250621 + 182312962 182313058 MLT1C 463 + 73 162 190585 51 12 6 10 1 0 22 chain 9648 chr1 249250621 + 182314938 182315047 AluSq2 311 + 183 292 162362 109 chain 5459 chr1 249250621 + 182322357 182322420 MER20 218 + 97 160 190426 63 chain 7713 chr1 249250621 + 182372255 182372356 L1MA8 2339 - 499 601 172845 85 0 1 16 chain 5933 chr1 249250621 + 182374236 182374328 Tigger3c 601 + 35 120 185852 78 7 0 7 chain 57410 chr1 249250621 + 182391161 182391992 L1PA16 3655 - 1416 2263 54285 53 1 0 14 0 9 104 0 3 47 13 14 77 0 1 4 35 39 79 1 0 242 1 0 110 0 2 41 1 0 8 chain 15841 chr1 249250621 + 182401007 182401182 AluYk4 311 - 10 185 138820 175 chain 125544 chr1 249250621 + 182408414 182409817 SVA_D 2077 - 21 2077 29229 514 0 352 129 0 262 126 0 39 246 6 0 360 1 7 21 chain 30100 chr1 249250621 + 182414605 182415010 LTR7 482 - 5 482 84491 169 1 2 45 4 37 21 0 1 6 1 0 81 8 46 69 chain 29809 chr1 249250621 + 182434400 182434748 L1PA5 6144 + 5785 6135 85406 40 1 2 173 4 5 130 chain 161838 chr1 249250621 + 182435011 182437907 L1PA4 6152 + 3701 6151 23085 30 166 165 41 0 1 5 1 0 4 0 2 5 821 368 313 1 0 398 1 2 494 0 1 466 3 8 147 chain 4565 chr1 249250621 + 182454952 182455041 MER58B 340 + 101 193 200053 19 24 27 46 chain 19614 chr1 249250621 + 182457677 182457883 AluYa5 310 + 98 304 128358 206 chain 13242 chr1 249250621 + 182467632 182467820 L1PA14 3548 - 2283 2462 147315 147 12 0 9 0 3 20 chain 2930 chr1 249250621 + 182476043 182476078 L1MA4 2864 - 60 95 226501 35 chain 160564 chr1 249250621 + 182477817 182479792 SVA_F 1814 - 0 1804 23261 638 126 0 75 50 0 136 2 17 20 49 0 48 1 0 12 0 40 818 chain 4272 chr1 249250621 + 182478455 182478544 SVA_F 1814 - 688 777 130473 89 chain 1240 chr1 249250621 + 182478553 182478581 SVA_F 1814 - 659 687 176553 28 chain 24744 chr1 249250621 + 182479852 182480297 L1MA4 2864 - 785 1228 106203 67 1 3 84 108 104 185 chain 43485 chr1 249250621 + 182482296 182483017 HUERS-P2-int 2744 - 0 710 64834 29 2 0 12 2 0 5 7 5 4 1 0 36 3 0 15 3 5 13 25 22 7 1 0 9 2 1 16 6 10 8 4 0 36 2 0 68 11 14 140 6 7 248 chain 18954 chr1 249250621 + 182497104 182497461 THE1C 375 - 0 375 130214 18 3 0 5 14 17 93 45 56 5 0 2 93 15 16 17 0 6 34 2 0 13 chain 32043 chr1 249250621 + 182497470 182497885 THE1C-int 1605 - 10 433 80794 90 0 7 146 19 20 160 chain 26133 chr1 249250621 + 182505719 182506061 THE1B 368 - 2 366 99471 47 0 10 6 2 0 4 1 0 103 0 1 27 1 0 109 0 15 42 chain 43310 chr1 249250621 + 182540360 182540873 MER9a3 513 + 0 513 65029 256 1 0 96 5 6 155 chain 20055 chr1 249250621 + 182547889 182548174 L1PB4 2604 + 2253 2548 126955 8 0 1 112 11 23 13 3 0 138 chain 19483 chr1 249250621 + 182581893 182582170 MER39B 650 - 38 312 128710 17 0 1 6 11 7 199 4 0 7 0 4 33 chain 21061 chr1 249250621 + 182582171 182582566 MER4A1 472 - 0 418 123689 33 2 6 27 8 10 108 53 72 81 1 0 8 9 0 44 8 16 13 chain 38711 chr1 249250621 + 182660549 182661118 L1PA15 4387 + 2289 2845 71136 21 1 0 176 23 1 224 36 44 18 0 2 70 chain 15962 chr1 249250621 + 182693113 182693422 MLT2A2 560 + 0 560 138481 168 20 12 13 68 327 40 chain 176085 chr1 249250621 + 182709690 182711920 SVA_D 2077 - 0 2065 21346 676 4 0 13 123 0 50 90 0 286 1 0 6 35 10 6 1 0 44 0 83 175 0 3 683 12 5 25 chain 7677 chr1 249250621 + 182710383 182710496 SVA_D 2077 - 791 905 72274 72 0 1 41 chain 6114 chr1 249250621 + 182710556 182710646 SVA_D 2077 - 993 1093 72274 32 18 28 40 chain 3310 chr1 249250621 + 182710939 182710974 SVA_D 2077 - 905 940 84876 35 chain 23720 chr1 249250621 + 182759796 182760077 AluYk4 311 - 31 311 111937 18 1 0 130 0 2 66 2 0 64 chain 23605 chr1 249250621 + 182788309 182788596 AluSq4 311 + 0 297 112551 87 1 10 34 0 1 165 chain 23688 chr1 249250621 + 182801762 182802122 THE1C 375 - 0 375 112102 26 1 0 46 3 12 32 1 0 72 5 12 37 0 4 14 19 16 104 chain 21552 chr1 249250621 + 182815372 182815657 AluSp 311 - 12 300 121956 90 0 1 28 4 6 23 3 0 5 1 4 131 chain 58833 chr1 249250621 + 182860686 182861764 L1MA3 4352 + 1917 2830 53497 63 18 20 29 174 0 14 6 1 30 0 1 65 3 11 33 0 1 27 0 2 99 1 0 34 1 0 22 4 8 20 3 4 27 9 11 65 26 21 58 1 0 20 0 1 226 chain 14285 chr1 249250621 + 182860803 182860965 L1PA5 6144 + 5982 6144 143604 162 chain 16928 chr1 249250621 + 182861799 182862852 MER50 708 - 44 660 135775 23 0 4 59 1 0 5 784 351 62 2 0 56 5 9 37 9 0 10 chain 85368 chr1 249250621 + 182863156 182864351 L1PB1 5432 + 3453 4689 41393 14 0 1 15 10 18 30 3 7 29 10 0 30 0 1 4 1 0 124 1 6 261 8 9 54 1 2 55 2 1 27 0 5 308 0 4 134 2 17 19 0 8 53 chain 10874 chr1 249250621 + 182881299 182881428 BC200 147 + 0 129 156680 129 chain 7445 chr1 249250621 + 182913539 182913624 5S 121 - 35 120 174470 85 chain 28646 chr1 249250621 + 182923368 182923671 AluYk11 308 + 0 303 90532 303 chain 151035 chr1 249250621 + 182949693 182951346 L1PA3long 6157 - 0 1653 24470 1653 chain 9785 chr1 249250621 + 182951346 182951453 U6 107 - 0 107 161676 107 chain 26842 chr1 249250621 + 182952017 182952308 AluYg6 310 - 1 310 96837 94 0 18 197 chain 45793 chr1 249250621 + 182965648 182966326 L1PA16 3655 - 80 784 62239 54 13 17 60 1 18 131 2 0 22 1 0 68 0 4 24 9 10 181 5 6 58 1 0 18 2 1 17 0 4 11 chain 47008 chr1 249250621 + 182974620 182976012 L1PB3 3668 - 54 793 61201 15 7 4 12 3 2 12 7 3 37 10 8 10 12 10 19 20 4 87 0 1 4 18 20 76 1 0 109 625 0 66 2 5 107 3 0 15 2 0 113 chain 82029 chr1 249250621 + 182979557 182980608 MER11C 1089 - 17 1089 42748 7 0 1 144 1 0 33 0 2 19 0 1 127 0 1 38 1 0 4 1 5 72 5 7 228 1 0 62 0 4 62 0 9 246 chain 26189 chr1 249250621 + 182985219 182985512 AluYk4 311 - 18 311 99244 293 chain 55884 chr1 249250621 + 183035443 183036110 L1PA7 6471 + 5813 6468 55190 562 8 0 18 0 1 7 4 1 57 2 0 9 chain 37587 chr1 249250621 + 183041740 183042224 MER1A 529 + 0 529 72703 389 1 0 54 11 57 29 chain 11879 chr1 249250621 + 183046570 183046896 L1PB1 5432 - 12 314 152701 16 1 0 12 1 0 22 1 0 16 101 90 27 1 0 16 2 1 47 23 17 9 1 0 13 1 0 16 chain 8230 chr1 249250621 + 183097515 183097610 L1PA4 6152 + 6058 6152 169778 89 1 0 5 chain 27689 chr1 249250621 + 183120317 183120632 L1PA5 6144 + 5818 6137 94082 89 0 4 226 chain 6854 chr1 249250621 + 183126375 183126471 MER44B 551 - 1 95 178549 7 1 0 74 1 0 13 chain 16068 chr1 249250621 + 183143863 183144124 L1MA2 4263 + 3854 4105 138153 62 6 5 35 11 9 93 16 9 38 chain 4182 chr1 249250621 + 183232574 183232622 MER5B 177 - 3 51 204798 48 chain 9890 chr1 249250621 + 183249823 183250305 MER30 238 + 74 238 161119 35 6 13 30 325 3 39 3 0 44 chain 23900 chr1 249250621 + 183280931 183281259 THE1B 368 + 0 341 110911 44 0 15 106 8 7 77 7 6 86 chain 19371 chr1 249250621 + 183284672 183284930 AluSg7 307 + 36 297 129024 95 0 1 127 8 9 11 0 1 17 chain 9292 chr1 249250621 + 183284938 183285056 L1PA7 6471 + 6348 6470 164100 107 0 4 11 chain 4056 chr1 249250621 + 183315124 183315171 MSTC 436 + 369 416 206533 47 chain 10576 chr1 249250621 + 183331746 183332239 L1MB7 1623 - 137 544 157928 7 1 0 16 64 50 20 209 155 15 4 0 14 5 0 7 1 0 5 17 10 108 chain 10615 chr1 249250621 + 183353633 183353807 MSTA 426 - 228 426 157752 43 31 55 100 chain 50203 chr1 249250621 + 183365375 183366028 MER50 708 + 24 686 58866 27 6 7 45 0 1 279 1 0 33 0 6 5 1 2 55 1 0 101 0 2 99 chain 421692 chr1 249250621 + 183366436 183371214 L1PA5 6144 + 1367 6143 9495 271 0 2 12 0 1 1855 0 1 165 2 1 2295 7 2 171 chain 69925 chr1 249250621 + 183396221 183397107 SVA_A 1864 + 505 1841 48421 14 1 80 17 2 0 111 2 0 105 10 155 70 40 270 514 chain 23332 chr1 249250621 + 183425040 183425327 AluY 311 + 1 281 114010 63 8 0 68 0 1 148 chain 5374 chr1 249250621 + 183478152 183478297 MER58A 224 - 9 162 191265 15 1 0 45 6 14 12 45 46 21 chain 15459 chr1 249250621 + 183529586 183529898 MER1B 344 - 3 344 140024 52 49 45 142 1 0 4 8 17 12 29 54 15 chain 28091 chr1 249250621 + 183582344 183582764 LTR7Y 441 + 0 427 92678 103 9 0 57 68 84 183 chain 300260 chr1 249250621 + 183582778 183586819 HERVH-int 3825 + 0 3825 13410 532 493 0 38 3 2 8 1 0 24 1 52 42 2 1 80 1 0 68 2 0 19 0 1 362 16 1 211 0 1 239 8 35 1370 0 3 31 8 218 254 3 8 225 chain 3249 chr1 249250621 + 183583688 183583727 HERVH-int 3825 + 483 522 203891 39 chain 6516 chr1 249250621 + 183583727 183583798 HERVH-int 3825 + 461 532 181121 71 chain 29553 chr1 249250621 + 183588077 183588508 LTR7Y 441 + 1 441 86405 102 9 0 57 66 84 197 chain 42640 chr1 249250621 + 183590602 183591147 MER41A 554 - 7 552 65852 63 10 15 41 0 1 193 10 4 228 chain 64394 chr1 249250621 + 183626430 183627133 L1PA4 6152 - 4 707 50844 703 chain 561440 chr1 249250621 + 183627204 183633358 L1PA3long 6157 + 0 6157 306 809 0 4 1933 0 1 865 0 1 67 3 0 2477 chain 26902 chr1 249250621 + 183635129 183635437 AluSp 311 - 1 309 96621 308 chain 484391 chr1 249250621 + 183648376 183654178 L1PA7 6471 - 3 6465 7575 154 0 1 129 19 40 441 1 0 82 1 0 23 1 2 250 0 1 150 0 39 207 1 0 273 0 4 956 0 8 211 1 0 226 0 2 441 1 0 187 2 0 120 0 2 194 0 5 283 2 1 6 0 1 659 1 0 4 0 1 71 0 1 79 11 593 216 0 2 236 1 0 95 1 0 66 chain 18269 chr1 249250621 + 183669980 183670240 L1PA8 5853 - 93 347 132157 19 2 1 33 15 14 14 1 0 71 2 0 44 1 0 58 chain 195985 chr1 249250621 + 183674075 183677444 HERVH48-int 3304 - 59 3185 19502 26 99 67 66 63 47 68 6 3 45 1 0 10 2 0 18 1 0 9 13 5 25 175 134 5 2 0 11 2 0 7 2 0 17 2 0 29 1 0 14 1 0 3 1 0 44 1 0 5 31 29 211 8 7 46 1 0 11 2 1 70 2 0 18 1 0 246 1 0 16 1 2 271 1 0 63 2 1 25 1 0 31 1 0 62 0 1 4 0 2 118 1 0 9 1 0 11 1 0 7 0 1 114 10 4 11 3 0 20 2 1 21 6 4 16 1 0 16 1 0 5 2 0 21 2 0 3 3 0 32 2 0 14 1 0 20 1 0 11 3 0 118 25 17 67 4 3 31 2 0 34 4 6 67 2 0 5 1 0 15 4 0 18 13 4 56 1 2 8 3 1 7 2 0 82 12 6 10 6 0 13 1 0 72 1 0 7 4 0 65 37 29 11 14 1 30 1 0 22 5 4 12 9 6 11 2 0 8 3 0 8 3 0 12 2 0 7 6 2 8 2 0 7 chain 17679 chr1 249250621 + 183677478 183677744 HERVH48-int 3304 + 924 1174 133749 44 0 2 41 3 0 11 1 0 20 1 0 15 2 0 31 3 0 3 2 0 21 2 0 5 1 0 16 1 0 16 6 4 21 chain 115798 chr1 249250621 + 183715787 183717220 L1PA7 6471 - 5 2753 32528 200 8 0 128 2 1 386 4 21 30 0 2 220 0 1304 417 0 1 38 chain 24225 chr1 249250621 + 183717220 183717529 L1PA7 6471 - 2761 3077 109062 214 0 12 55 11 0 14 0 6 15 chain 62863 chr1 249250621 + 183717830 183718580 L1PA7 6471 - 3077 3828 51503 531 0 1 219 chain 45177 chr1 249250621 + 183718580 183719125 L1PA7 6471 - 3888 4434 62844 373 0 1 172 chain 44595 chr1 249250621 + 183719125 183719653 L1PA7 6471 - 4435 4964 63485 480 1 2 47 chain 118247 chr1 249250621 + 183719653 183721143 L1PA7 6471 - 4965 6470 31709 139 0 1 239 8 7 4 0 1 495 0 13 203 0 1 402 chain 30918 chr1 249250621 + 183729153 183729575 Tigger1 2417 - 31 458 82655 28 5 6 23 3 0 78 0 4 134 1 0 26 0 4 124 chain 63498 chr1 249250621 + 183731747 183732520 L1PA7 6471 + 5682 6457 51244 456 0 1 158 18 19 141 chain 28802 chr1 249250621 + 183733304 183733739 LOR1a 498 - 46 490 89892 47 6 10 135 39 40 77 6 10 125 chain 10845 chr1 249250621 + 183735108 183735226 L1PA4 6152 + 6033 6151 156804 118 chain 30296 chr1 249250621 + 183741862 183742180 AluYb9 318 + 0 318 83943 318 chain 6098 chr1 249250621 + 183743615 183743696 LOR1b 457 + 10 101 184427 21 4 14 56 chain 19559 chr1 249250621 + 183806847 183807148 MER1B 344 - 0 302 128495 19 0 1 48 19 23 37 22 18 156 chain 49093 chr1 249250621 + 183815089 183815684 L1PA7 6471 + 5872 6468 59674 441 0 1 7 5 0 102 1 10 25 4 0 10 chain 33014 chr1 249250621 + 183839180 183839780 MER48 407 - 7 407 79192 264 200 0 136 chain 5290 chr1 249250621 + 183874917 183875162 MER58B 340 + 77 328 192123 19 149 151 51 9 13 17 chain 48403 chr1 249250621 + 183893187 183893767 L1PA7 6471 + 5896 6469 60182 148 0 1 213 8 0 49 0 7 7 7 0 148 chain 11755 chr1 249250621 + 183894430 183894621 L1PA8 5853 + 5653 5853 153242 25 2 1 14 2 0 5 2 3 43 1 0 16 4 3 12 0 13 65 chain 16514 chr1 249250621 + 183966600 183966824 MER30 238 - 0 238 136878 39 3 0 70 13 30 99 chain 3992 chr1 249250621 + 183977206 183977457 L1MC4 1079 + 593 865 207498 31 85 100 18 92 98 25 chain 4295 chr1 249250621 + 183991458 183991506 MSTD 398 + 9 57 203298 48 chain 16499 chr1 249250621 + 184011298 184011619 L1PA13 3608 + 3251 3546 136925 21 2 0 52 0 3 9 8 7 13 1 0 40 2 0 48 2 0 4 2 0 20 1 0 24 4 1 11 5 0 14 1 0 6 7 1 10 4 1 10 chain 27171 chr1 249250621 + 184016651 184017051 LTR7 482 + 0 474 95690 101 15 14 17 0 51 41 5 37 24 16 7 15 0 1 166 chain 4310 chr1 249250621 + 184040297 184040347 L1MD 993 - 202 252 203087 50 chain 7050 chr1 249250621 + 184064940 184065022 MLT1B 390 + 304 386 177110 82 chain 24949 chr1 249250621 + 184065731 184066083 THE1B 368 - 0 368 105064 75 1 0 94 4 0 27 8 6 22 8 16 73 0 15 40 chain 96890 chr1 249250621 + 184074201 184075648 L1PA14 3548 - 83 1504 37585 10 6 0 41 1 0 16 1 0 11 1 0 9 4 2 35 10 5 115 1 0 84 1 0 6 2 0 13 30 26 63 13 12 12 2 0 5 2 0 47 2 0 14 3 1 250 1 0 148 6 5 11 0 1 29 0 4 142 1 0 119 1 0 4 0 1 55 0 1 10 3 0 76 0 10 12 3 0 16 chain 547701 chr1 249250621 + 184099707 184105891 L1PA4 6152 - 1 6151 1742 1799 0 4 2402 1 0 242 0 5 866 34 0 257 1 0 118 7 0 457 chain 3038 chr1 249250621 + 184129881 184129913 MLT1H 522 - 353 385 224231 32 chain 3817 chr1 249250621 + 184132131 184132173 MER50 708 + 564 606 210135 42 chain 24736 chr1 249250621 + 184146343 184146627 AluY 311 + 0 301 106240 52 0 16 64 0 1 168 chain 32998 chr1 249250621 + 184153570 184153946 L1PA5 6144 - 0 373 79217 13 3 0 360 chain 26980 chr1 249250621 + 184157133 184157484 MER75 514 + 180 513 96347 146 18 0 187 chain 65336 chr1 249250621 + 184164109 184165319 L1PA8A 6298 + 5395 6290 50407 94 8 12 17 8 9 129 321 0 16 22 24 303 2 1 290 chain 25103 chr1 249250621 + 184171884 184172303 MSTA 426 - 0 426 104269 163 30 27 28 0 5 47 52 56 16 0 1 83 chain 41467 chr1 249250621 + 184190734 184191253 MLT2A2 560 + 2 560 67329 180 0 23 73 0 1 122 3 14 84 2 1 5 0 1 44 0 4 6 chain 533055 chr1 249250621 + 184198098 184204515 L1PA4 6152 - 12 6144 3840 43 0 4 258 0 1 533 1 0 446 0 9 179 0 1 31 1 0 884 0 1 130 311 0 725 0 1 863 2 1 212 1 0 979 29 29 76 1 0 593 5 19 114 chain 25812 chr1 249250621 + 184214416 184214786 THE1B 368 - 0 368 100818 128 30 26 14 0 3 28 1 0 169 chain 25799 chr1 249250621 + 184221376 184221724 L1PA8 5853 + 5502 5853 100876 62 1 0 44 2 0 25 0 8 38 1 0 9 1 0 52 2 1 19 1 0 85 0 2 6 chain 14580 chr1 249250621 + 184241189 184241354 L1PA2 6032 + 5869 6032 142657 157 2 0 6 chain 16734 chr1 249250621 + 184251730 184251991 L1PA16 3655 + 3372 3618 136301 43 0 1 119 11 7 37 3 0 13 4 0 11 5 0 15 chain 269187 chr1 249250621 + 184273637 184277814 L1MA1 4479 - 279 4348 15223 10 3 0 18 6 0 21 17 15 30 0 2 26 5 4 103 0 1 4 75 71 32 2 1 7 38 0 13 0 35 52 1 0 16 2 0 26 1 0 88 16 21 83 2 0 62 2 1 60 11 10 6 3 0 33 0 2 39 6 1 4 0 1 39 5 0 9 57 17 62 8 4 15 13 0 174 2 0 113 1 0 65 1 0 33 2 0 95 11 10 123 0 1 160 0 1 215 4 0 81 1 3 29 0 1 370 1 0 4 0 1 22 7 8 355 6 4 300 3 7 196 4 0 18 25 26 70 2 0 5 0 2 132 5 9 75 4 1 10 0 1 83 2 1 73 2 0 22 5 9 20 57 44 10 1 0 3 2 0 8 1 0 15 1 0 17 chain 8477 chr1 249250621 + 184289588 184289687 L1PA8A 6298 + 6191 6290 168420 99 chain 22143 chr1 249250621 + 184290068 184290331 AluY 311 + 22 286 119610 110 0 1 153 chain 4165 chr1 249250621 + 184305116 184305325 L1ME1 1623 + 1306 1523 205027 48 144 152 17 chain 313885 chr1 249250621 + 184306494 184310014 L1PA4 6152 - 9 3535 12863 132 2 1 8 0 3 175 0 3 2126 0 1 1077 chain 11653 chr1 249250621 + 184322871 184323063 7SLRNA 320 + 20 213 153683 124 44 45 24 chain 6582 chr1 249250621 + 184342368 184342449 LTR16B2 458 - 270 352 180600 18 1 2 62 chain 28511 chr1 249250621 + 184399920 184400259 L1PA7 6471 - 1500 1847 90413 293 0 8 46 chain 126932 chr1 249250621 + 184400259 184401808 L1PA7 6471 + 4966 6468 28830 655 56 0 77 0 2 158 0 1 250 0 3 195 9 10 139 0 2 10 chain 49316 chr1 249250621 + 184418185 184418737 L1PA4 6152 - 0 553 59509 113 0 1 439 chain 3418 chr1 249250621 + 184492150 184492198 L1MC3 1789 + 1334 1385 216789 35 0 4 4 1 0 8 chain 23108 chr1 249250621 + 184526404 184526831 L1PB1 5432 - 9 402 115103 6 1 0 13 6 5 6 1 0 23 1 0 24 2 0 14 1 0 9 2 0 15 26 14 13 1 0 45 1 0 15 2 1 52 2 0 9 5 1 14 1 0 10 1 0 20 3 0 5 5 6 73 chain 28690 chr1 249250621 + 184540145 184540457 AluYa5 310 + 0 308 90367 123 1 0 3 3 0 182 chain 37410 chr1 249250621 + 184542286 184542777 MER75 514 + 0 497 72946 9 0 1 63 15 16 326 0 4 78 chain 28029 chr1 249250621 + 184555419 184555716 AluYf4 310 - 13 310 92897 297 chain 17894 chr1 249250621 + 184556343 184556652 L1PA13 3608 - 164 509 133116 48 20 5 33 1 0 17 3 6 61 2 0 39 9 12 39 0 3 22 1 0 5 0 46 9 chain 4594 chr1 249250621 + 184557701 184557793 MIR 256 + 109 200 199701 44 27 26 21 chain 12634 chr1 249250621 + 184620431 184620634 MER30 238 + 0 238 149715 95 25 63 41 10 7 32 chain 2741 chr1 249250621 + 184643691 184643737 L1MA5A 2387 + 814 862 229615 17 5 7 24 chain 53709 chr1 249250621 + 184645364 184646232 L1MA5A 2387 + 1570 2375 56542 66 10 0 61 0 3 135 0 1 12 0 1 184 1 0 74 1 0 49 2 0 5 8 9 11 1 0 36 3 0 13 28 0 36 0 4 22 51 25 13 0 2 9 1 0 21 2 0 13 chain 28220 chr1 249250621 + 184648753 184649075 L1PA3long 6157 + 5794 6157 92235 209 0 41 113 chain 73832 chr1 249250621 + 184649670 184650719 MER11A 1151 - 0 1151 46604 23 8 0 50 0 1 89 6 7 60 0 1 36 18 0 22 8 41 53 4 0 78 5 7 8 1 0 131 6 7 93 4 6 144 4 0 63 0 4 51 0 91 24 0 1 60 chain 10732 chr1 249250621 + 184689643 184689755 AluYg6 310 - 12 124 157271 112 chain 29488 chr1 249250621 + 184743471 184743902 MER4E 760 + 329 752 86676 24 9 11 46 1 0 43 2 1 15 6 5 44 1 3 7 9 0 224 chain 5868 chr1 249250621 + 184749195 184749283 MADE1 96 + 0 87 186499 38 10 9 40 chain 6876 chr1 249250621 + 184749573 184749826 L1ME1 1623 - 134 388 178387 39 10 4 13 130 137 61 chain 88936 chr1 249250621 + 184752462 184753543 MER11A 1151 + 0 1151 40031 9 0 1 66 0 8 146 1 0 64 0 2 6 1 0 503 2 1 18 0 49 22 1 0 21 0 14 221 chain 13512 chr1 249250621 + 184757860 184758014 L1PA6 6164 + 6001 6162 146315 146 0 7 8 chain 120297 chr1 249250621 + 184768178 184769815 L1PA3long 6157 - 0 1315 30940 678 322 0 637 chain 150602 chr1 249250621 + 184783844 184785991 MER57-int 2662 + 526 2659 24527 218 0 1 96 29 37 226 0 4 173 5 6 82 1 3 32 1 0 195 0 1 4 13 28 83 8 10 183 3 0 312 2 0 100 18 14 15 4 0 58 47 41 56 20 8 9 2 0 22 1 0 5 1 0 10 4 1 23 1 0 7 15 10 26 7 4 30 chain 67879 chr1 249250621 + 184786028 184786835 L1PA6 6164 - 15 826 49297 172 5 7 172 0 2 458 chain 5088 chr1 249250621 + 184790563 184790622 U7 62 - 2 61 194192 59 chain 4077 chr1 249250621 + 184795524 184795570 MADE1 96 - 50 96 206233 46 chain 188651 chr1 249250621 + 184802995 184805147 L1PA6 6164 - 2 2169 20179 8 2 0 563 0 2 273 0 3 217 0 12 441 1 0 72 0 1 575 chain 564701 chr1 249250621 + 184814750 184820775 L1HS 6032 + 6 6032 220 1646 1 0 4203 0 1 45 0 1 130 chain 44528 chr1 249250621 + 184850621 184851159 MER41A 554 - 1 554 63548 109 0 9 310 0 3 71 0 3 48 chain 34968 chr1 249250621 + 184894200 184894802 L1MA3 4352 - 3762 4352 76232 4 1 0 149 2 1 124 1 2 114 79 73 20 1 0 8 6 10 4 1 0 44 1 0 15 13 7 15 chain 20619 chr1 249250621 + 184903181 184903454 L1PA16 3655 + 3313 3590 125228 5 0 2 5 0 1 39 0 4 209 3 0 12 chain 7146 chr1 249250621 + 184910365 184910442 L1P1 4361 - 127 204 176435 77 chain 22498 chr1 249250621 + 184915960 184916229 AluSp 311 + 37 306 118032 269 chain 12836 chr1 249250621 + 184921595 184921778 MER30 238 - 0 192 148901 48 3 0 63 8 20 61 chain 29574 chr1 249250621 + 184937053 184937364 AluYb9 318 + 0 311 86303 311 chain 27032 chr1 249250621 + 184947057 184947353 AluY 311 + 11 308 96172 121 0 1 175 chain 546039 chr1 249250621 + 184970667 184976684 L1PA3long 6157 + 4 6157 1940 147 1 2 623 0 128 263 1 4 3171 6 11 1312 2 1 491 chain 56336 chr1 249250621 + 185034143 185034917 LTR12 884 + 0 867 54943 76 26 0 45 0 25 55 0 2 29 0 66 58 0 22 169 3 0 197 8 15 108 chain 2165 chr1 249250621 + 185034220 185034245 LTR12 884 + 249 274 215909 25 chain 14932 chr1 249250621 + 185044617 185044959 MSTA 426 - 12 400 141527 13 9 11 54 1 0 19 4 23 54 106 132 82 chain 48220 chr1 249250621 + 185050200 185052123 HSMAR1 1287 - 0 1287 60301 309 0 2 12 1277 634 253 1 5 55 1 2 15 chain 25416 chr1 249250621 + 185067889 185068181 AluSc 308 - 16 308 102609 292 chain 24906 chr1 249250621 + 185096606 185096918 AluSp 311 + 0 309 105302 29 1 0 96 2 0 184 chain 519325 chr1 249250621 + 185164141 185170842 L1PA7 6471 - 10 6471 5231 581 0 1 189 3 4 62 0 3 62 0 1 10 1 0 8 0 1 380 0 7 202 0 1 343 22 55 257 17 7 284 0 1 46 0 5 115 0 1 229 1 0 4 0 15 37 1 5 11 0 1 430 1 0 83 0 3 48 0 6 120 1 0 50 1 2 58 1 2 43 0 4 42 13 1 160 310 0 316 0 5 600 2 0 98 7 8 75 0 1 904 7 6 32 4 5 26 1 2 403 chain 102833 chr1 249250621 + 185178370 185179599 L1PA7 6471 - 10 1245 36042 18 1 0 4 0 1 5 1 0 101 8 12 703 0 3 388 chain 74880 chr1 249250621 + 185179606 185180536 L1PA7 6471 + 4246 5171 46074 70 21 11 200 0 1 16 0 1 227 0 3 396 chain 59801 chr1 249250621 + 185180682 185181348 L1PA4 6152 + 5485 6151 52929 666 chain 102111 chr1 249250621 + 185202363 185203940 L1P2 5180 - 1955 3218 36235 292 2 0 210 328 16 308 1 5 75 0 1 223 1 0 48 4 0 85 chain 231320 chr1 249250621 + 185203941 185206831 L1PA7 6471 + 3556 6461 17240 114 1 0 163 2 0 175 0 1 47 0 1 325 1 11 265 0 3 6 0 1 6 0 4 69 2 0 272 22 1 431 18 23 140 0 3 83 1 4 93 5 6 59 18 24 422 1 3 4 0 1 145 chain 5143 chr1 249250621 + 185215202 185215262 Tigger3b 1229 - 1153 1213 193629 60 chain 7840 chr1 249250621 + 185220444 185220540 HY3 101 + 0 99 172074 90 0 3 6 chain 551271 chr1 249250621 + 185220930 185226933 L1PA2 6032 - 5 6027 1277 302 0 13 1486 0 4 157 0 1 3991 0 1 67 chain 6101 chr1 249250621 + 185227050 185227125 HY3 101 - 7 79 184394 45 3 0 27 chain 5235 chr1 249250621 + 185235690 185235751 HY3 101 + 33 94 192670 61 chain 3773 chr1 249250621 + 185247842 185247887 Tigger9b 617 - 59 104 210773 45 chain 96340 chr1 249250621 + 185290049 185291378 LTR12C 1709 - 0 1709 37722 84 5 4 74 2 103 161 0 1 54 11 4 11 24 0 95 4 2 4 1 0 85 0 278 144 1 2 132 9 8 82 0 43 50 9 1 287 chain 7526 chr1 249250621 + 185306413 185306583 LTR54 533 - 0 173 174000 25 32 35 63 1 0 4 21 22 24 chain 12278 chr1 249250621 + 185310855 185311337 LTR48 738 - 0 541 151084 28 4 15 8 12 0 11 7 10 12 1 0 10 40 37 58 151 212 40 44 36 49 0 8 7 chain 4117 chr1 249250621 + 185315949 185316002 MER58C 217 - 3 56 205688 53 chain 11323 chr1 249250621 + 185328689 185328830 L1P4a 3072 + 135 276 154989 141 chain 544772 chr1 249250621 + 185347734 185353871 L1PA4 6152 - 1 6152 2101 2234 0 1 968 0 2 158 0 4 1946 17 0 107 13 39 116 1 0 260 2 1 315 chain 30091 chr1 249250621 + 185373106 185373424 AluYb8 318 + 0 318 84519 318 chain 29788 chr1 249250621 + 185422615 185423097 MER1A 529 + 37 528 85517 46 6 15 13 36 32 242 15 18 53 14 15 57 chain 130778 chr1 249250621 + 185428763 185430378 L1PA8 5853 + 4233 5853 27912 107 2 0 367 0 1 376 0 2 440 10 18 20 9 8 35 2 1 70 2 1 9 1 0 11 3 5 36 2 1 19 1 0 93 chain 274347 chr1 249250621 + 185473901 185477799 L1PB1 5432 - 10 3808 14958 18 1 0 13 1 0 21 1 0 19 30 25 15 10 0 11 3 0 4 1 0 16 2 1 43 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 10 9 11 73 16 255 0 1 4 6 5 115 0 1 10 0 2 79 10 12 351 10 0 57 0 2 10 59 60 293 0 1 103 18 11 271 0 1 211 2 1 213 0 4 196 5 3 126 4 6 5 2 0 170 16 11 8 2 0 561 2 5 310 chain 15694 chr1 249250621 + 185481363 185481546 THE1C-int 1605 + 1422 1605 139292 183 chain 39328 chr1 249250621 + 185486475 185486961 L1PA5 6144 + 5650 6144 70288 285 0 1 127 2 9 72 chain 41642 chr1 249250621 + 185509122 185509660 MER41A 554 - 14 554 67101 155 0 2 215 0 1 20 1 2 51 3 4 14 4 1 75 chain 12896 chr1 249250621 + 185510816 185510976 L1PA5 6144 + 5983 6144 148644 6 0 2 6 1 0 147 chain 26868 chr1 249250621 + 185544748 185545039 L1PA3long 6157 - 0 291 96751 291 chain 190359 chr1 249250621 + 185546343 185550169 L1PA11 4918 - 356 2960 20010 8 1 0 15 13 9 10 8 3 9 4 0 20 1 0 16 2 0 64 27 25 54 6 1 259 0 1 41 1215 6 216 6 7 44 3 4 47 4 6 7 1 0 557 7 6 178 0 1 224 10 9 405 1 2 10 0 2 55 2 0 32 0 1 5 28 30 47 1 5 163 chain 87992 chr1 249250621 + 185546913 185548116 MER11A 1151 + 0 1151 40376 108 0 2 120 1 0 1 93 0 61 1 3 187 0 1 325 1 0 4 0 1 6 6 40 58 0 1 53 0 1 8 8 9 162 chain 6691 chr1 249250621 + 185547143 185547236 MER11A 1151 + 143 227 163092 33 8 0 23 1 0 28 chain 237382 chr1 249250621 + 185550656 185553828 HERVK22-int 3844 - 0 3832 16917 16 12 0 78 1 0 88 58 691 175 7 36 66 1 4 18 5 14 594 0 1 75 0 1 146 0 1 345 10 7 415 1 0 760 12 8 7 0 4 282 chain 507823 chr1 249250621 + 185555540 185561623 L1PA6 6164 + 0 6162 6343 388 24 29 150 1 0 67 0 2 174 0 1 415 1 6 50 1 2 808 1 2 231 0 1 256 11 19 1308 0 6 523 0 1 307 0 15 51 0 1 482 6 2 15 0 8 24 0 1 93 0 5 54 0 1 457 0 1 19 1 2 5 1 0 5 0 21 154 chain 32785 chr1 249250621 + 185579050 185579597 L1MA2 4263 + 3586 4113 79555 72 9 8 128 42 39 123 11 9 93 31 18 29 1 0 8 chain 6398 chr1 249250621 + 185589271 185589356 L1MC 810 - 68 152 182037 12 1 0 72 chain 43614 chr1 249250621 + 185592651 185593374 LTR9 672 - 13 672 64667 36 0 1 29 2 0 56 32 48 20 8 9 57 6 6 7 81 0 47 1 2 250 1 0 76 0 1 14 chain 6864 chr1 249250621 + 185599561 185599647 HY3 101 - 1 88 178465 51 0 1 35 chain 34201 chr1 249250621 + 185601240 185601703 MER4A1 472 + 8 472 77349 4 1 0 137 0 1 52 12 14 180 12 11 65 chain 542605 chr1 249250621 + 185606780 185613198 L1PA4 6152 + 1 6151 2405 126 0 14 246 1 0 188 0 4 490 1 0 352 285 0 717 0 4 587 0 1 1827 3 0 74 1 0 11 0 1 30 4 0 624 0 4 708 1 0 142 chain 25355 chr1 249250621 + 185608196 185608468 AluYa5 310 + 38 310 102921 272 chain 24750 chr1 249250621 + 185616563 185616963 MER4E 760 - 17 432 106174 60 0 14 228 83 84 29 chain 3657 chr1 249250621 + 185617876 185617918 LTR12C 1709 - 549 591 212637 42 chain 3717 chr1 249250621 + 185622186 185622262 MADE1 96 - 1 96 211671 32 21 40 23 chain 5468 chr1 249250621 + 185629573 185629666 MLT1F2 592 - 455 548 190329 48 16 16 29 chain 10866 chr1 249250621 + 185652706 185652875 MSTC 436 - 61 221 156710 91 0 2 18 10 7 29 8 0 13 chain 552889 chr1 249250621 + 185676529 185682709 L1PA3long 6157 + 10 6157 1079 868 0 1 134 1 0 713 44 6 271 0 1 693 1 0 75 0 1 1584 0 4 1796 chain 7920 chr1 249250621 + 185707711 185707809 L1MB8 1703 - 450 550 171522 20 0 2 78 chain 536097 chr1 249250621 + 185747480 185753626 L1PA5 6144 - 0 6144 3432 148 1 2 2904 0 1 517 6 8 752 0 1 788 1 2 392 6 4 104 0 1 30 7 0 276 1 2 123 1 0 89 chain 20823 chr1 249250621 + 185796064 185796329 AluY 311 + 38 308 124528 94 6 7 9 1 5 155 chain 104417 chr1 249250621 + 185798438 185799764 L1PA8A 6298 - 7 1349 35636 35 0 1 40 6 2 42 14 14 288 0 4 111 12 20 244 2 1 227 1 0 246 0 9 58 chain 547580 chr1 249250621 + 185856438 185862466 L1PA2 6032 - 0 6029 1757 4157 0 1 1509 0 1 108 1 0 253 chain 18508 chr1 249250621 + 185901739 185901954 L1PA8A 6298 + 6068 6283 131477 215 chain 40461 chr1 249250621 + 185917410 185917861 LTR7 482 - 0 482 68649 185 0 31 266 chain 300920 chr1 249250621 + 185919118 185922893 HERVH-int 3825 - 0 3825 13378 487 8 218 1404 8 35 458 15 0 200 13 12 223 1 0 6 0 3 14 0 2 7 1 2 54 3 2 42 1 0 25 4 1 12 1 0 14 29 0 24 1 0 10 1 0 38 141 0 22 0 8 230 10 0 84 0 4 184 chain 3665 chr1 249250621 + 185922222 185922262 HERVH-int 3825 - 3349 3389 201966 40 chain 39897 chr1 249250621 + 185922895 185923348 LTR7 482 - 0 482 69458 185 0 31 214 3 1 51 chain 24608 chr1 249250621 + 185944370 185944736 MSTA 426 - 18 426 106945 91 4 24 57 2 0 87 25 49 100 chain 7310 chr1 249250621 + 185983464 185983543 L1PA2 6032 - 9 88 175369 79 chain 33620 chr1 249250621 + 185993967 185994445 MER1A 529 - 7 529 78209 47 17 20 320 11 51 66 1 2 16 chain 39567 chr1 249250621 + 186001172 186002182 L1PB2 3958 + 3196 3838 69938 27 2 3 81 2 0 55 1 0 9 3 0 54 0 4 9 2 0 7 35 29 54 347 0 17 42 35 38 1 0 63 4 3 69 2 0 21 2 1 63 chain 26573 chr1 249250621 + 186001518 186001860 THE1C 375 + 0 375 97749 106 0 33 46 1 0 74 0 2 88 1 0 26 chain 18295 chr1 249250621 + 186031979 186032369 L1PB4 2604 - 35 367 132089 17 1 0 145 9 10 11 100 39 79 10 13 18 chain 15532 chr1 249250621 + 186048560 186048754 LTR18B 584 - 389 584 139797 7 1 0 11 0 1 156 0 1 19 chain 35094 chr1 249250621 + 186101790 186102203 L1PA4 6152 - 9 429 76056 130 1 8 14 2 0 44 0 2 222 chain 9670 chr1 249250621 + 186102207 186102334 L1PA4 6152 + 5551 5679 162243 31 9 10 87 chain 541606 chr1 249250621 + 186126628 186132690 L1PA3long 6157 - 8 6157 2575 93 0 46 702 0 4 108 0 2 547 0 5 284 0 4 12 0 8 562 1 0 316 0 1 894 0 1 858 0 2 228 0 1 222 1 0 56 1 4 93 0 3 378 0 7 125 0 2 581 chain 29537 chr1 249250621 + 186137898 186138280 L1PA7 6471 - 2 381 86488 153 13 9 170 1 2 45 chain 35703 chr1 249250621 + 186175545 186176010 MER75 514 + 33 503 75268 218 14 17 28 6 8 199 chain 63445 chr1 249250621 + 186180471 186181232 L1PA5 6144 + 5373 6128 51266 4 0 1 227 9 0 322 0 1 122 0 1 77 chain 221617 chr1 249250621 + 186185293 186187735 L1PA4 6152 + 3705 6151 17777 749 0 3 1360 0 1 333 chain 45556 chr1 249250621 + 186192005 186192640 L1PBa 3878 + 2533 3158 62451 130 6 8 10 0 1 22 0 3 7 8 4 84 1 0 68 0 1 163 3 0 13 1 0 9 8 0 102 chain 41151 chr1 249250621 + 186196888 186197411 MER41A 554 + 0 554 67712 17 0 1 168 0 1 25 12 29 152 0 12 149 chain 6136 chr1 249250621 + 186201985 186202131 MLT2B4 540 - 393 540 184120 52 56 57 38 chain 42240 chr1 249250621 + 186214381 186214940 MER51C 639 + 7 610 66348 27 3 8 152 0 1 16 1 0 39 0 1 49 8 42 73 0 4 191 chain 38098 chr1 249250621 + 186216663 186217115 LTR71A 459 + 7 459 71989 452 chain 122227 chr1 249250621 + 186218133 186219682 THE1B-int 1605 - 5 1580 30302 70 0 2 351 3 2 493 1 0 7 4 5 213 0 25 407 chain 22649 chr1 249250621 + 186219706 186220063 THE1B 368 - 1 368 117329 74 7 6 14 0 1 5 6 5 61 3 1 18 11 10 98 1 0 15 0 15 10 0 1 14 1 0 19 chain 5819 chr1 249250621 + 186220417 186220626 L1MC1 2226 + 1939 2128 186950 16 42 37 55 53 41 12 6 4 18 1 0 6 chain 533241 chr1 249250621 + 186225732 186231861 L1PA4 6152 - 2 6142 3817 5 0 2 841 0 1 4 4 7 681 5 0 126 1 0 127 0 2 756 0 1 552 0 1 1694 0 8 99 1 0 1233 chain 37945 chr1 249250621 + 186234588 186235038 L1PA7 6471 - 3 447 72216 7 4 0 12 1 0 141 1 0 284 chain 23849 chr1 249250621 + 186240463 186240748 AluY 311 + 20 305 111187 285 chain 13900 chr1 249250621 + 186240872 186241090 MER2 342 - 28 246 144913 15 24 26 113 2 0 64 chain 28452 chr1 249250621 + 186249065 186249369 AluYb8 318 - 18 318 91363 177 4 0 123 chain 22726 chr1 249250621 + 186257768 186258053 AluY 311 + 17 306 116950 53 4 10 52 0 1 167 3 0 6 chain 68048 chr1 249250621 + 186316905 186317896 MER11A 1151 + 0 1136 49227 85 0 91 54 0 4 58 11 9 123 21 22 92 0 7 138 5 7 145 24 56 28 1 2 60 6 7 23 0 2 53 3 9 61 chain 14723 chr1 249250621 + 186318199 186318423 MER47A 366 - 70 314 142189 40 12 0 121 4 0 12 2 38 33 chain 15743 chr1 249250621 + 186323063 186323292 MER75B 242 + 0 242 139135 10 4 3 13 0 3 41 7 19 127 1 0 26 chain 23723 chr1 249250621 + 186336192 186336487 AluSg7 307 - 3 298 111915 295 chain 7058 chr1 249250621 + 186341759 186341849 5S 121 + 0 90 177046 90 chain 28001 chr1 249250621 + 186350461 186350758 AluYf4 310 - 13 310 92999 297 chain 6751 chr1 249250621 + 186352589 186352669 L1PA8A 6298 + 6180 6260 179315 80 chain 29261 chr1 249250621 + 186369111 186369421 AluYg6 310 - 0 310 87735 310 chain 8046 chr1 249250621 + 186380202 186380414 Tigger4a 237 + 3 112 170782 98 103 0 11 chain 3112 chr1 249250621 + 186382346 186382384 Tigger4a 237 - 195 234 222707 16 0 1 22 chain 14046 chr1 249250621 + 186428419 186428572 SVA_F 1814 + 96 253 144393 89 0 4 64 chain 3564 chr1 249250621 + 186436728 186436781 L1M3 994 + 65 111 214239 35 7 0 11 chain 3885 chr1 249250621 + 186446609 186446654 MADE1 96 + 51 96 209097 45 chain 496818 chr1 249250621 + 186475548 186481798 L1PA7 6471 - 12 6265 7019 312 0 1 34 0 11 422 0 1 54 1 2 19 0 4 40 1 5 268 0 1 170 3 5 239 0 1 341 0 4 231 29 8 73 0 1 202 9 10 303 4 3 113 1 2 31 7 11 34 0 1 610 0 1 250 10 0 359 12 0 141 1 2 190 0 2 203 1 2 68 0 1 416 6 0 336 7 12 64 1 0 219 5 7 164 4 5 42 1 3 199 chain 19210 chr1 249250621 + 186493713 186494051 THE1D 372 + 20 353 129503 16 1 0 10 10 1 22 32 34 63 14 0 9 0 18 32 1 0 128 chain 298931 chr1 249250621 + 186495641 186500000 L1PA11 4918 - 414 4452 13483 16 1 0 14 2 0 67 2 0 13 2 1 65 5 0 178 0 1 77 7 8 294 23 35 189 6 5 8 0 4 64 0 5 4 352 0 38 0 1 64 3 4 287 0 3 25 0 2 275 6 5 68 25 33 104 0 1 20 0 5 265 0 1 198 1 0 163 1 2 70 16 13 105 11 0 100 0 4 105 0 7 78 12 9 42 0 1 57 11 5 127 0 7 281 0 2 135 1 0 48 2 0 5 2 4 92 1 3 126 chain 515820 chr1 249250621 + 186514431 186520572 L1PA6 6164 - 2 6160 5592 13 3 0 841 2 0 629 0 1 33 2 0 376 8 9 80 0 1 480 1 0 509 0 1 120 1 4 332 0 1 146 0 4 163 0 1 90 5 0 1309 1 0 195 0 17 53 0 1 4 1 0 242 0 1 502 chain 7592 chr1 249250621 + 186533663 186533776 L1M1 2793 + 2126 2240 173600 76 9 10 28 chain 114652 chr1 249250621 + 186552040 186553590 THE1B-int 1605 + 0 1597 32901 242 31 37 121 0 64 189 19 13 89 19 4 95 1 2 439 7 4 298 chain 3825 chr1 249250621 + 186582730 186582776 Tigger4 2445 - 85 130 210007 39 1 0 6 chain 551014 chr1 249250621 + 186606463 186612488 L1PA2 6032 + 2 6028 1309 70 1 2 183 1 0 7 1 0 1560 0 1 178 0 1 4024 chain 3355 chr1 249250621 + 186621948 186622028 LTR9 672 + 585 663 217958 9 2 0 17 21 22 15 1 0 15 chain 87345 chr1 249250621 + 186637243 186638272 L1PA7 6471 - 1172 2218 40632 229 0 29 56 3 0 72 9 0 660 chain 96269 chr1 249250621 + 186638299 186639436 L1PA7 6471 + 5317 6458 37741 79 1 0 302 0 2 20 0 3 735 chain 48009 chr1 249250621 + 186666042 186666804 L1PA14 3548 + 2702 3443 60477 236 3 1 14 13 11 11 1 0 25 9 5 34 1 2 73 4 0 17 2 0 6 1 0 5 1 6 73 1 0 110 1 0 9 5 1 38 4 2 12 24 21 29 chain 20092 chr1 249250621 + 186670406 186670657 AluSq2 311 + 59 303 126853 69 7 0 175 chain 518056 chr1 249250621 + 186692983 186700092 L1PA7 6471 - 4 6471 5377 330 0 1 187 6 9 76 0 4 157 2 3 72 10 7 672 1 0 36 9 0 46 6 5 185 0 8 655 0 1 86 0 1 75 15 16 308 1 0 4 8 4 22 3 1 45 6 2 193 0 1 761 442 0 233 1 0 110 305 0 722 0 1 204 0 12 530 7 4 62 1 0 212 0 91 238 0 10 65 chain 2893 chr1 249250621 + 186723941 186723972 LTR33 499 - 53 84 227130 31 chain 54085 chr1 249250621 + 186728297 186728895 L1PA4 6152 + 5544 6143 56302 230 0 1 368 chain 11724 chr1 249250621 + 186774714 186774920 MER30 238 - 0 238 153367 30 15 12 66 4 19 63 13 33 15 chain 116786 chr1 249250621 + 186778116 186779431 L1PA4 6152 - 1 1316 32193 761 0 1 508 6 5 40 chain 68634 chr1 249250621 + 186794888 186795688 L1PA6 6164 + 5362 6162 48967 469 1 2 320 1 0 9 chain 5398 chr1 249250621 + 186809339 186809404 Charlie4a 502 + 435 500 191008 65 chain 13089 chr1 249250621 + 186813771 186813920 L1PA4 6152 + 5994 6143 147885 149 chain 78914 chr1 249250621 + 186826741 186827715 L1PA6 6164 - 4 978 44100 6 3 0 38 5 9 104 1 0 237 9 5 439 0 4 132 chain 14995 chr1 249250621 + 186848977 186849151 L1PA5 6144 - 4 181 141334 167 0 3 7 chain 29511 chr1 249250621 + 186861292 186861752 L1MA1 4479 - 331 771 86600 6 1 0 35 2 0 29 1 0 26 5 3 14 3 1 82 3 0 6 5 4 54 1 0 43 2 0 19 1 0 71 1 0 16 2 0 25 1 0 6 chain 38047 chr1 249250621 + 186883503 186883966 LTR2 463 - 0 463 72061 22 1 0 66 12 13 362 chain 522059 chr1 249250621 + 186883986 186891006 HERVE_a-int 7009 - 12 6838 4952 6 2 0 24 33 25 15 4 2 33 2 0 25 1 0 13 3 1 6 1 0 31 1 0 26 3 1 54 8 5 21 4 0 9 2 1 55 7 5 28 5 3 47 1 0 22 1 0 35 2 1 7 2 0 5 1 0 16 2 1 9 1 0 32 1 0 44 3 2 125 14 13 77 1 0 13 1 0 18 3 1 56 1 0 3 1 0 15 1 0 102 2 0 240 4 1 17 1 0 11 8 7 81 1 0 25 1 0 39 2 0 7 1 0 73 2 1 9 1 0 29 1 0 111 9 0 99 0 1 596 0 1 1057 1 0 262 3 0 236 1 0 85 1 0 19 0 1 385 1 0 168 1 0 39 1 0 13 1 0 144 1 0 8 7 5 17 13 8 29 5 3 26 2 1 53 1 0 41 1 0 12 1 0 23 2 1 16 1 0 25 1 0 43 1 0 41 2 1 37 1 0 33 4 0 28 1 0 38 1 0 41 1 0 16 26 23 14 1 0 11 1 0 20 1 0 19 1 0 11 11 26 78 1 0 16 1 0 23 1 0 57 2 0 56 1 0 6 1 0 5 1 0 9 2 1 7 1 0 5 1 0 22 1 0 16 1 0 6 2 1 15 8 4 10 10 8 11 15 14 11 1 0 52 1 0 12 2 0 42 1 0 32 2 1 73 1 0 8 1 0 26 1 0 67 1 0 23 0 2 5 4 0 48 1 0 14 6 5 28 2 1 14 2 1 12 2 0 5 0 1 92 1 0 35 1 0 52 2 1 21 1 0 44 2 1 24 4 2 27 35 7 18 1 0 5 1 0 6 34 26 14 1 0 7 2 1 8 1 0 3 1 0 22 0 2 2 4 0 5 2 0 73 3 1 14 chain 36542 chr1 249250621 + 186891806 186892265 LTR2 463 - 0 463 74181 88 14 15 302 0 3 55 chain 40020 chr1 249250621 + 186923233 186923725 L1PA6 6164 + 5665 6159 69292 100 5 6 184 0 1 203 chain 51273 chr1 249250621 + 186972001 186972658 PABL_A 660 + 0 660 58138 135 1 0 305 0 2 7 0 1 49 10 11 150 chain 42675 chr1 249250621 + 186975540 186976095 LTR12_ 688 - 0 687 65805 9 0 1 104 3 0 6 4 37 18 1 0 23 0 102 387 chain 11466 chr1 249250621 + 186976095 186976238 LTR19B 566 - 423 566 154448 143 chain 121974 chr1 249250621 + 186976455 186978266 PABL_A-int 1935 + 105 1911 30393 28 8 6 107 15 16 37 1 0 31 1 2 7 1 0 67 5 8 107 11 10 162 2 1 118 0 1 21 0 3 48 0 1 26 0 4 69 1 0 295 0 5 143 6 4 68 9 0 8 0 9 83 9 27 11 31 13 76 5 4 105 1 0 18 2 0 18 6 2 15 1 0 4 11 5 13 chain 51625 chr1 249250621 + 186978732 186979384 PABL_A 660 + 4 660 57879 98 11 14 275 0 1 268 chain 97822 chr1 249250621 + 186992796 186993984 L1PA7 6471 + 5272 6470 37326 350 1 5 374 0 2 286 5 13 99 4 0 69 chain 12363 chr1 249250621 + 187006148 187006304 L1PA6 6164 + 6011 6162 150785 142 5 0 9 chain 118662 chr1 249250621 + 187041732 187043513 LTR12C 1709 - 0 1709 31549 62 360 0 190 0 8 144 0 1 76 0 4 106 3 1 5 1 0 85 0 278 749 chain 2654 chr1 249250621 + 187041899 187041929 LTR12C 1709 - 269 299 208984 30 chain 14538 chr1 249250621 + 187041929 187042096 LTR12C 1709 - 66 233 142773 167 chain 34682 chr1 249250621 + 187059580 187059967 L1P1 4361 - 3940 4327 76649 387 chain 13804 chr1 249250621 + 187059974 187060135 L1PA4 6152 + 5984 6152 145255 155 0 7 6 chain 156369 chr1 249250621 + 187066856 187068932 L1PA8 5853 - 0 2130 23817 75 0 1 16 7 6 11 11 10 43 4 3 11 1 0 62 7 5 10 1 0 36 1 0 43 0 1 267 24 25 140 0 1 80 8 13 25 11 5 430 0 1 163 0 1 28 0 50 81 1 0 71 0 1 28 0 6 355 0 1 25 chain 21926 chr1 249250621 + 187077421 187077689 L1PA7 6471 + 6200 6469 120518 113 0 1 155 chain 23846 chr1 249250621 + 187077702 187077989 AluY 311 + 0 288 111206 76 0 6 41 2 0 10 3 0 155 chain 11735 chr1 249250621 + 187082767 187083039 L1PB1 5432 - 2 250 153324 8 2 0 18 1 0 13 1 0 21 1 0 11 37 32 19 18 8 5 1 0 14 1 0 44 1 0 16 2 1 38 chain 9647 chr1 249250621 + 187107336 187107445 L1PA5 6144 - 7 116 162365 109 chain 99521 chr1 249250621 + 187108086 187109281 L1PA6 6164 - 3733 4931 36901 93 5 6 81 0 1 33 0 4 761 1 0 182 2 0 37 chain 287951 chr1 249250621 + 187109282 187112682 L1PA6 6164 + 2446 6161 14162 224 0 1 784 0 3 78 0 295 71 0 1 33 3 4 52 7 8 1587 7 10 346 16 25 47 0 1 145 chain 13482 chr1 249250621 + 187131460 187131765 L1PB1 5432 - 43 318 146407 18 2 1 24 2 0 12 12 9 17 16 6 6 3 0 11 9 8 41 1 0 15 2 1 53 2 0 8 5 1 12 1 0 8 1 0 24 chain 28639 chr1 249250621 + 187132805 187133116 AluYa5 310 + 0 310 90563 97 2 1 212 chain 25960 chr1 249250621 + 187136407 187136684 L1PA2 6032 - 2 279 100170 277 chain 12740 chr1 249250621 + 187146711 187146897 MSTA-int 1630 - 66 642 149292 43 0 1 32 13 402 98 chain 5432 chr1 249250621 + 187155815 187155925 L1PA14 3548 + 3343 3456 190685 24 0 1 10 34 36 42 chain 77778 chr1 249250621 + 187165439 187166404 L1PA7 6471 - 1 976 44625 11 1 6 47 0 6 91 1 2 27 6 4 569 1 2 84 1 0 126 chain 6073 chr1 249250621 + 187168789 187168870 L1PA16 3655 + 3203 3284 184631 69 0 1 4 1 0 7 chain 23737 chr1 249250621 + 187179602 187179968 THE1B 368 + 0 368 111853 167 26 27 6 1 0 10 0 4 10 7 6 12 2 1 125 chain 9300 chr1 249250621 + 187191575 187191700 L1MA1 4479 - 4124 4247 164061 76 2 0 47 chain 17532 chr1 249250621 + 187201838 187202049 AluY 311 + 92 302 134176 173 6 5 32 chain 14933 chr1 249250621 + 187202911 187203123 L1MA2 4263 - 212 422 141525 76 23 21 113 chain 15901 chr1 249250621 + 187215527 187215882 THE1B 368 - 0 368 138653 56 1 2 57 37 39 13 0 3 29 1 0 34 80 88 47 chain 8365 chr1 249250621 + 187245658 187245748 L1PA4 6152 + 6056 6146 169042 90 chain 10147 chr1 249250621 + 187291692 187291814 L1PA8 5853 - 183 302 159861 62 2 0 46 1 0 11 chain 12587 chr1 249250621 + 187291815 187292007 L1PA8 5853 + 5665 5853 149896 16 1 0 6 2 1 51 8 7 14 1 0 93 chain 194505 chr1 249250621 + 187301037 187303199 L1PA4 6152 - 209 2380 19629 635 0 4 663 0 5 864 chain 18939 chr1 249250621 + 187303199 187303415 L1PA4 6152 + 5939 6152 130255 208 3 0 5 chain 566414 chr1 249250621 + 187312896 187318926 L1HS 6032 - 0 6031 121 5147 0 1 883 chain 28383 chr1 249250621 + 187331736 187332121 MLT2A1 477 + 0 399 91654 88 1 18 36 0 1 25 1 5 48 0 1 100 2 1 62 8 0 14 chain 275179 chr1 249250621 + 187367271 187370605 L1PA7 6471 + 3101 6454 14914 517 3 4 118 0 1 644 0 1 419 8 12 810 1 2 71 2 12 726 0 1 15 chain 16303 chr1 249250621 + 187437962 187440180 MER4A1 472 + 26 472 137474 65 1958 184 65 10 11 114 0 1 6 chain 29266 chr1 249250621 + 187476323 187476696 THE1C 375 + 0 375 87715 182 8 9 103 0 2 54 1 0 25 chain 37468 chr1 249250621 + 187484699 187485151 L1PA7 6471 - 5 475 72861 136 6 23 206 3 4 101 chain 48876 chr1 249250621 + 187502737 187503303 L1PA7 6471 + 5751 6319 59825 4 0 1 380 0 1 182 chain 12670 chr1 249250621 + 187503306 187503447 L1PA7 6471 + 6323 6464 149570 141 chain 4853 chr1 249250621 + 187504263 187504390 L1MB2 1706 - 11 124 196743 56 30 18 10 1 0 5 11 10 14 chain 291658 chr1 249250621 + 187509766 187513019 L1PA3long 6157 - 1 3279 13924 54 1 5 210 1 0 399 0 4 324 0 5 791 0 4 355 0 3 25 0 1 710 0 4 202 0 1 181 chain 8810 chr1 249250621 + 187514511 187514610 L1PA5 6144 - 6 104 166601 12 1 0 86 chain 9311 chr1 249250621 + 187519609 187520130 LTR12D 1347 - 352 908 164009 41 396 431 84 chain 264250 chr1 249250621 + 187525471 187529255 L1PA10 4194 - 196 4019 15471 96 0 3 243 0 4 164 6 7 246 11 10 166 1 2 101 26 10 321 0 3 10 4 1 185 8 7 291 7 8 289 0 92 18 1 0 4 0 1 6 0 2 60 14 16 239 2 1 5 0 1 230 1 0 162 5 6 64 37 18 16 15 0 375 1 9 22 2 0 77 5 4 8 13 0 13 5 0 12 1 0 6 10 8 21 2 0 13 50 28 7 1 0 15 2 0 22 1 0 5 8 7 7 0 32 10 2 0 14 chain 2830 chr1 249250621 + 187530380 187530415 MADE1 96 - 60 96 228213 9 0 1 26 chain 23457 chr1 249250621 + 187553337 187553618 AluSc5 308 + 16 298 113337 262 0 1 19 chain 31901 chr1 249250621 + 187565980 187566452 THE1C-int 1605 - 2 469 81010 345 44 40 46 6 5 31 chain 564563 chr1 249250621 + 187566803 187572831 L1HS 6032 + 3 6032 222 210 0 1 5818 chain 4989 chr1 249250621 + 187584876 187585151 SVA_F 1814 + 496 1273 195259 13 34 0 7 3 0 20 18 21 13 114 650 53 chain 2105 chr1 249250621 + 187585292 187585330 SVA_F 1814 + 465 495 237608 7 8 0 23 chain 2355 chr1 249250621 + 187585353 187585377 SVA_F 1814 + 637 661 234751 24 chain 9200 chr1 249250621 + 187585605 187585850 SVA_F 1814 + 387 680 164554 36 104 149 87 6 9 12 chain 77733 chr1 249250621 + 187585931 187586857 SVA_A 1864 + 710 1852 44640 17 2 0 38 1 3 118 1 0 101 2 0 29 11 230 606 chain 95726 chr1 249250621 + 187602277 187603326 L1PA3long 6157 + 5108 6157 37891 1049 chain 102240 chr1 249250621 + 187611326 187612762 MER61-int 3695 + 0 1513 36205 28 6 2 20 6 5 50 0 1 164 3 2 54 10 6 32 0 1 16 1 0 5 1 0 26 15 1 54 3 0 67 4 9 34 0 1 33 0 8 22 9 97 65 19 18 34 2 0 58 0 1 6 1 0 73 0 1 228 0 3 270 0 1 17 chain 8078 chr1 249250621 + 187628348 187628442 MSTA 426 - 332 426 170597 94 chain 12705 chr1 249250621 + 187629753 187629952 MER30 238 - 0 238 149434 42 8 5 60 4 24 45 5 27 35 chain 34735 chr1 249250621 + 187638269 187638806 MLT2A2 560 - 0 549 76565 62 7 8 78 3 14 57 15 16 59 1 34 12 35 1 208 chain 120969 chr1 249250621 + 187672565 187673985 LTR12C 1709 + 0 1709 30704 153 3 0 128 4 5 364 0 278 184 1 0 4 4 2 106 0 4 112 0 11 124 0 1 233 chain 21488 chr1 249250621 + 187686232 187686525 L1PA8 5853 - 0 288 122188 76 0 1 16 1 0 13 9 8 51 1 0 6 1 0 74 2 0 43 chain 18617 chr1 249250621 + 187699183 187699418 L1PA6 6164 + 5922 6157 131166 235 chain 43035 chr1 249250621 + 187711549 187712108 MLT2A2 560 + 0 559 65374 187 3 0 8 5 9 159 4 3 193 chain 5634 chr1 249250621 + 187716946 187717011 MSTC-int 1625 + 29 94 188732 65 chain 261639 chr1 249250621 + 187725674 187728647 L1PA5 6144 - 1 2994 15609 17 1 0 12 0 8 379 0 1 257 0 2 929 0 1 188 0 6 36 1 0 52 0 3 749 0 1 352 chain 40063 chr1 249250621 + 187734639 187735090 LTR7 482 - 0 482 69230 88 0 1 80 1 0 18 0 31 264 chain 292625 chr1 249250621 + 187736335 187739894 HERVH-int 3825 - 0 3825 13851 225 0 2 32 0 1 227 8 218 31 0 3 5 9 11 813 0 1 4 1 0 115 1 4 112 0 10 295 8 35 610 0 1 289 0 3 13 10 13 53 2 1 38 4 3 7 21 0 10 6 36 24 1 0 10 1 0 38 5 0 9 24 23 334 0 2 164 chain 11663 chr1 249250621 + 187739896 187740032 LTR7 482 - 0 482 153628 103 0 346 33 chain 407271 chr1 249250621 + 187773080 187777630 L1PA3long 6157 - 0 4564 9869 143 24 35 3869 0 3 514 chain 83099 chr1 249250621 + 187792472 187793395 L1PA2 6032 - 0 923 41977 923 chain 120589 chr1 249250621 + 187793395 187794729 L1PA2 6032 + 3785 5100 30844 1254 19 0 61 chain 147577 chr1 249250621 + 187799016 187800683 L1PA4 6152 - 0 1674 24947 10 0 6 741 5 3 90 0 3 821 chain 122395 chr1 249250621 + 187819155 187820596 LTR12C 1709 + 0 1709 30250 122 1 7 570 0 159 254 1 0 4 4 2 106 0 4 172 0 102 207 chain 344819 chr1 249250621 + 187825296 187830394 L1PB1 5432 - 329 5241 11760 377 5 25 46 31 28 241 34 353 5 0 2 270 0 6 17 2 6 33 2 0 6 6 11 169 4 6 133 0 1 118 1 0 426 1 0 4 0 1 105 359 0 101 0 3 29 0 1 84 1 0 39 0 1 203 1 0 31 1 2 72 1 0 355 1 3 67 53 0 12 126 0 313 8 1 58 1 0 175 1 0 268 0 1 132 6 8 564 chain 78063 chr1 249250621 + 187842791 187843704 L1PA5 6144 - 1 930 44485 48 0 11 716 0 1 69 1 5 79 chain 14517 chr1 249250621 + 187903329 187903513 MSTA 426 + 229 414 142829 129 0 1 55 chain 18416 chr1 249250621 + 187905120 187905474 MSTA 426 + 19 417 131726 64 113 157 177 chain 2385 chr1 249250621 + 187907356 187907525 L1ME1 1623 + 1057 1216 234343 26 121 112 14 1 0 7 chain 16352 chr1 249250621 + 187937325 187937589 L1PA8 5853 - 0 268 137333 47 1 0 45 2 1 19 2 1 32 17 20 9 1 0 19 0 7 45 2 0 23 chain 71362 chr1 249250621 + 187951037 187951959 L1PA8 5853 - 6 913 47762 19 0 1 66 4 3 17 2 1 39 8 7 15 1 0 69 2 0 46 1 0 207 8 1 123 1 0 4 0 1 219 2 0 69 chain 74026 chr1 249250621 + 187972455 187973470 L1PB2 3958 - 1081 2099 46499 166 1 0 35 0 1 176 19 9 22 7 18 23 0 3 389 4 0 13 1 2 68 0 2 91 chain 110244 chr1 249250621 + 187981611 187982987 LTR12C 1709 - 0 1709 34142 119 0 10 352 0 4 54 0 14 38 10 7 97 0 278 231 18 37 165 0 19 41 17 0 149 1 2 39 0 8 45 chain 257474 chr1 249250621 + 188000276 188003088 L1PA3long 6157 - 8 2820 15847 2812 chain 33918 chr1 249250621 + 188005919 188006344 THE1B-int 1605 + 0 425 77744 425 chain 22509 chr1 249250621 + 188007806 188008157 THE1B 368 + 0 368 117991 30 0 2 40 1 2 95 1 0 19 48 63 117 chain 12992 chr1 249250621 + 188050062 188050233 MER30 238 - 5 197 148275 102 3 24 66 chain 26613 chr1 249250621 + 188056432 188056712 AluYa5 310 + 29 309 97621 280 chain 17466 chr1 249250621 + 188061014 188061212 L1PA4 6152 + 5954 6152 134339 198 chain 3991 chr1 249250621 + 188071151 188071204 LTR49-int 1717 + 1091 1143 207520 48 1 0 4 chain 29485 chr1 249250621 + 188083747 188084057 AluYb8 318 - 8 318 86692 310 chain 83425 chr1 249250621 + 188114682 188115675 L1PA7 6471 - 2 995 42147 160 1 2 686 2 1 144 chain 82635 chr1 249250621 + 188150825 188151864 MER11C 1089 + 0 1073 42490 225 0 5 22 7 10 57 1 18 249 12 13 176 0 8 290 chain 46994 chr1 249250621 + 188162942 188163514 L1PA5 6144 + 5584 6143 61216 420 7 0 27 1 0 106 5 0 6 chain 28634 chr1 249250621 + 188181509 188182337 L1MA4 2864 - 75 836 90582 16 160 95 5 2 0 37 6 8 5 2 0 50 1 0 51 0 3 118 64 67 14 73 75 11 2 0 22 23 22 48 3 2 4 0 1 9 13 12 19 3 0 67 chain 9752 chr1 249250621 + 188216810 188216940 MER2 342 + 81 210 161836 38 1 0 91 chain 69679 chr1 249250621 + 188226275 188227145 LTR12 884 - 8 884 48533 90 10 17 392 2 0 96 6 7 274 chain 302478 chr1 249250621 + 188228411 188232236 HERV9-int 5642 - 819 5584 13298 301 0 9 270 0 2 215 8 9 65 7 942 737 0 1 285 6 3 73 0 1 666 11 9 124 2 0 7 3 1 84 85 0 71 0 85 57 0 1 10 1 0 78 0 4 109 6 5 241 1 0 230 16 14 56 chain 60560 chr1 249250621 + 188232236 188232988 LTR12 884 - 5 884 52535 503 2 0 148 15 144 84 chain 117549 chr1 249250621 + 188237394 188239038 Charlie3 2679 - 9 1656 31944 54 2 1 5 2 0 5 1 0 3 23 0 49 0 10 293 0 11 22 0 1 229 9 13 273 9 1 15 28 31 101 12 9 29 0 10 360 15 17 105 chain 58954 chr1 249250621 + 188248431 188249264 L1PA8 5853 - 0 826 53426 80 0 1 10 1 2 19 2 1 44 1 0 16 6 5 67 2 0 44 1 0 39 0 3 6 5 0 58 2 0 280 23 24 127 chain 26324 chr1 249250621 + 188279129 188279418 AluYf4 310 + 20 310 98724 4 0 1 285 chain 425202 chr1 249250621 + 188304577 188310498 HERVL-int 5654 - 2 5654 9414 138 0 18 11 31 5 111 1 0 35 1 4 109 1 0 408 5 0 157 0 12 522 0 2 8 22 24 12 0 2 50 3 0 5 18 21 134 17 18 244 1 0 368 6 7 292 0 1 246 1 16 193 0 2 454 0 1 316 0 2 36 2 0 243 13 17 288 1 0 339 5 0 126 1 0 167 0 1 30 327 34 92 1 0 240 1 0 20 0 1 5 21 22 43 chain 25292 chr1 249250621 + 188309776 188310061 L1PA4 6152 + 5851 6136 103260 285 chain 25781 chr1 249250621 + 188313454 188313807 MLT2A1 477 + 0 355 100963 57 5 6 105 1 5 59 6 3 120 chain 44602 chr1 249250621 + 188321398 188321886 L1PA2 6032 - 0 488 63478 488 chain 45335 chr1 249250621 + 188321886 188322372 L1PA2 6032 + 5052 5538 62677 486 chain 53681 chr1 249250621 + 188342586 188343590 L1PA7 6471 + 5764 6467 56558 78 2 3 292 315 0 83 0 17 78 2 1 138 3 0 13 chain 4349 chr1 249250621 + 188375008 188375094 Tigger3a 397 + 53 202 202609 22 20 83 44 chain 18212 chr1 249250621 + 188452068 188452287 L1P1 4361 + 4 223 132305 219 chain 24636 chr1 249250621 + 188455479 188455776 L1PA7 6471 + 6162 6459 106801 297 chain 32935 chr1 249250621 + 188468401 188468765 L1PA5 6144 + 5773 6139 79313 223 0 2 141 chain 8039 chr1 249250621 + 188480727 188480869 MER4D1 891 + 719 862 170822 85 35 36 22 chain 34759 chr1 249250621 + 188487138 188487510 L1HS 6032 - 2 374 76527 372 chain 96313 chr1 249250621 + 188488686 188489763 L1P1 4361 - 1146 2223 37727 1077 chain 5881 chr1 249250621 + 188489770 188489836 L1PA3long 6157 + 6075 6142 186368 49 0 1 17 chain 85700 chr1 249250621 + 188492214 188493386 HERVL-int 5654 + 4501 5632 41265 29 6 0 68 6 7 618 19 6 30 23 19 246 23 4 104 chain 3952 chr1 249250621 + 188493877 188493924 MLT2A1 477 + 429 476 208116 47 chain 160694 chr1 249250621 + 188527092 188528865 L1PA3long 6157 - 1 1770 23237 877 4 0 892 chain 73864 chr1 249250621 + 188528865 188529681 L1PA3long 6157 + 3585 4403 46488 33 0 2 783 chain 31200 chr1 249250621 + 188536696 188537150 LTR7B 505 + 0 505 82161 34 0 1 58 0 31 84 7 5 18 7 26 31 0 5 114 0 1 4 1 0 29 14 13 26 2 0 25 chain 29692 chr1 249250621 + 188576009 188576394 MLT2A1 477 + 0 380 85862 169 4 1 21 2 0 189 chain 50545 chr1 249250621 + 188576618 188577269 HERVL-int 5654 + 0 655 58618 111 5 6 529 0 3 6 chain 30591 chr1 249250621 + 188582269 188582704 MLT2A1 477 + 0 477 83219 94 1 0 75 4 1 24 1 0 185 5 3 11 4 49 23 0 4 8 chain 58929 chr1 249250621 + 188593348 188593992 L1PA3long 6157 - 22 666 53439 644 chain 99769 chr1 249250621 + 188596985 188598260 L1PA7 6471 + 5173 6467 36838 23 1 0 127 6 12 257 22 19 8 0 11 200 11 14 50 0 2 348 0 1 222 chain 144833 chr1 249250621 + 188605162 188606809 L1PA4 6152 + 4504 6152 25351 449 0 2 286 7 0 762 0 1 137 0 5 6 chain 5371 chr1 249250621 + 188626758 188626816 L1PA4 6152 + 5944 6002 191297 58 chain 12607 chr1 249250621 + 188626817 188626967 L1PA4 6152 + 6004 6151 149813 133 3 0 14 chain 30129 chr1 249250621 + 188638021 188638352 L1PA2 6032 + 5701 6032 84389 331 chain 32778 chr1 249250621 + 188659459 188659866 L1PA5 6144 - 13 419 79567 147 5 4 255 chain 3328 chr1 249250621 + 188708574 188708674 MER5B 177 + 1 101 218437 27 46 46 27 chain 18910 chr1 249250621 + 188713619 188713874 AluY 311 + 41 298 130337 98 15 15 121 0 2 21 chain 53086 chr1 249250621 + 188718446 188719093 LTR6A 649 + 0 649 56967 160 0 1 42 2 3 229 1 0 186 1 2 26 chain 79668 chr1 249250621 + 188720366 188721337 LTR5_Hs 974 - 0 974 43748 171 2 0 20 29 11 310 0 25 21 6 0 399 0 4 13 chain 547667 chr1 249250621 + 188721382 188727391 L1PA2 6032 - 14 6032 1745 276 0 3 503 1 0 64 1 0 2044 5 7 116 0 3 1960 0 3 1039 chain 34477 chr1 249250621 + 188727945 188728328 L1P1 4361 + 3669 4052 76947 383 chain 143060 chr1 249250621 + 188765073 188766799 L1PA7 6471 - 10 1745 25644 441 0 6 311 1 0 78 1 5 311 0 1 239 1 0 343 chain 70241 chr1 249250621 + 188766799 188767669 L1PA7 6471 + 5609 6465 48129 11 1 0 7 14 4 827 3 0 7 chain 4812 chr1 249250621 + 188772618 188772669 L1PA6 6164 - 9 60 197208 51 chain 7762 chr1 249250621 + 188780222 188780321 L1PA10 4194 + 3995 4093 172533 81 2 1 16 chain 110087 chr1 249250621 + 188782035 188783637 LTR12C 1709 + 0 1687 34188 266 0 1 25 0 6 83 52 111 11 10 9 60 3 7 124 41 0 133 2 1 193 0 88 90 24 0 16 11 4 90 1 2 121 0 1 170 14 13 62 chain 3266 chr1 249250621 + 188782669 188782710 LTR12C 1709 + 822 862 91118 15 1 0 25 chain 26541 chr1 249250621 + 188798233 188798575 L1PA7 6471 - 10 387 97874 6 0 3 62 1 31 37 0 1 12 1 2 223 chain 7446 chr1 249250621 + 188803187 188803300 MLT1A1 405 + 0 114 174469 33 16 17 64 chain 87868 chr1 249250621 + 188805698 188806864 L1PA5 6144 - 0 1577 40337 11 3 1 348 0 1 115 1 16 243 128 525 317 chain 106430 chr1 249250621 + 188806864 188808105 L1PA5 6144 + 4897 6144 35146 393 1 5 520 0 1 61 8 9 258 chain 27404 chr1 249250621 + 188808867 188809178 AluYk4 311 + 0 307 94956 126 4 0 181 chain 126789 chr1 249250621 + 188809392 188810870 LTR12C 1709 - 19 1709 28862 288 0 1 173 0 4 31 0 207 149 1 0 510 0 1 326 chain 7230 chr1 249250621 + 188827401 188827743 LTR12C 1709 + 837 977 175892 56 120 0 33 111 29 22 chain 2866 chr1 249250621 + 188829635 188829715 L1M3 994 + 240 319 227562 13 5 3 24 20 21 18 chain 6733 chr1 249250621 + 188829985 188830068 MSTA 426 - 15 98 179446 83 chain 3133 chr1 249250621 + 188839708 188839757 L1MC 810 - 107 160 222301 24 2 6 23 chain 9966 chr1 249250621 + 188841916 188842024 L1PA5 6144 + 6035 6143 160742 108 chain 4564 chr1 249250621 + 188861562 188861614 L1MA8 2339 + 266 318 200060 52 chain 5670 chr1 249250621 + 188866816 188866980 LTR12 884 - 675 785 188387 34 79 0 24 1 26 26 chain 86284 chr1 249250621 + 188868241 188869215 L1PA4 6152 + 5170 6146 41048 642 0 1 225 0 1 107 chain 32584 chr1 249250621 + 188874588 188875133 MLT2A2 560 + 0 550 79885 168 79 51 41 13 14 28 23 44 56 0 11 137 chain 9472 chr1 249250621 + 188896191 188896316 MER85 139 - 0 135 163209 40 0 10 85 chain 35664 chr1 249250621 + 188928030 188928485 LTR15 485 + 0 478 75316 75 0 1 22 0 18 34 0 2 123 0 4 158 1 0 5 2 0 14 0 1 21 chain 305150 chr1 249250621 + 188949768 188953668 L1PA8A 6298 - 7 3929 13206 129 3 0 5 12 15 553 0 3 76 0 1 37 0 1 243 0 1 552 0 2 29 0 1 287 0 1 284 0 1 22 0 8 149 5 6 11 1 2 404 0 4 14 1 4 31 9 8 41 5 1 42 19 17 193 5 7 137 0 4 422 2 0 42 4 1 131 chain 13923 chr1 249250621 + 188966220 188966378 L1PA4 6152 + 5985 6143 144845 158 chain 28221 chr1 249250621 + 188969515 188969813 AluYa5 310 - 11 310 92230 212 0 1 86 chain 24360 chr1 249250621 + 188992529 188992831 AluY 311 + 8 310 108317 44 2 1 76 1 2 179 chain 30427 chr1 249250621 + 188994966 188995284 AluYb8 318 - 0 318 83619 318 chain 58322 chr1 249250621 + 189000798 189001450 L1PA5 6144 - 14 666 53797 652 chain 56575 chr1 249250621 + 189001450 189002098 L1PA5 6144 + 4819 5471 54808 478 0 4 170 chain 29071 chr1 249250621 + 189029562 189029893 L1PA7 6471 - 7 338 88675 331 chain 35591 chr1 249250621 + 189029893 189030338 L1PA7 6471 + 5685 6132 75423 15 1 4 237 5 4 187 chain 12606 chr1 249250621 + 189036893 189037031 L1PA3long 6157 + 6019 6157 149819 138 chain 143187 chr1 249250621 + 189060501 189062143 L1PA5 6144 - 4 1627 25619 249 1 0 778 0 1 454 18 0 36 1 0 105 chain 21779 chr1 249250621 + 189075229 189075487 AluSc 308 + 25 283 121103 258 chain 23923 chr1 249250621 + 189084959 189085231 L1HS 6032 - 3 268 110791 8 7 0 257 chain 14377 chr1 249250621 + 189089105 189089279 L1PA7 6471 - 6 180 143275 174 chain 36625 chr1 249250621 + 189089970 189090417 L1PA8 5853 - 183 628 74063 62 2 0 46 1 0 120 0 1 216 chain 47139 chr1 249250621 + 189106551 189107118 L1PA5 6144 + 5577 6143 61097 428 0 1 114 1 0 12 2 1 10 chain 123137 chr1 249250621 + 189108308 189109758 SVA_B 1603 - 6 1603 29996 238 1 0 343 0 124 40 1 0 145 0 1 4 1 0 120 1 3 505 11 35 19 0 1 9 1 0 6 1 0 4 chain 341877 chr1 249250621 + 189131413 189135591 L1PA7 6471 - 5 4177 11838 849 0 3 220 0 1 42 1 2 392 0 1 5 8 0 270 1 3 672 6 5 198 0 1 239 0 1 581 1 0 91 0 4 176 0 1 77 5 0 278 6 0 60 chain 9905 chr1 249250621 + 189142723 189142842 MLT2A2 560 + 8 127 161047 119 chain 35304 chr1 249250621 + 189143610 189144060 L1P1 4361 - 20 470 75790 12 2 1 23 1 0 155 7 6 243 0 3 7 chain 53738 chr1 249250621 + 189159894 189160546 L1PA5 6144 - 6 655 56509 245 5 2 4 1 0 76 0 1 321 chain 8487 chr1 249250621 + 189167031 189167251 MLT1D 503 - 18 245 168371 97 102 109 21 chain 172987 chr1 249250621 + 189177595 189179569 L1PA4 6152 - 11 1985 21708 1904 1 0 4 0 1 65 chain 100017 chr1 249250621 + 189179569 189180698 L1PA4 6152 + 3043 4174 36746 69 0 1 652 0 1 408 chain 127076 chr1 249250621 + 189194152 189195869 SVA_B 1603 + 0 1600 28798 11 2 0 6 0 12 13 20 0 394 116 0 340 0 80 76 56 22 21 46 7 192 0 2 424 chain 43469 chr1 249250621 + 189209811 189210286 L1PA3long 6157 - 0 475 64849 475 chain 24163 chr1 249250621 + 189212437 189212728 L1PA4 6152 - 0 297 109411 6 0 5 137 0 1 148 chain 113878 chr1 249250621 + 189229607 189231074 L1PA7 6471 - 4 1430 33124 144 0 8 6 9 1 267 14 1 222 34 4 69 0 1 123 1 0 196 5 6 265 0 1 112 chain 29871 chr1 249250621 + 189231080 189231427 L1PA7 6471 + 4682 5029 85202 347 chain 51954 chr1 249250621 + 189236196 189236963 LTR12D 1347 + 405 1347 57646 131 26 32 121 53 29 17 1 0 191 0 200 154 0 4 48 10 0 15 chain 2689 chr1 249250621 + 189236497 189236527 LTR12D 1347 + 646 676 204395 30 chain 209011 chr1 249250621 + 189266603 189268952 L1P1 4361 - 69 2417 18567 142 1 0 99 0 1 879 1 0 192 0 1 111 1 0 923 chain 72814 chr1 249250621 + 189268952 189269781 L1PA4 6152 + 5322 6152 47120 716 0 1 113 chain 534950 chr1 249250621 + 189294414 189300558 L1PA4 6152 - 1 6152 3601 796 0 3 467 0 1 255 1 0 947 2 0 28 0 17 1572 1 0 23 0 1 5 1 0 11 0 2 1182 17 0 109 1 2 147 0 3 501 0 1 78 chain 6299 chr1 249250621 + 189300984 189301064 L1PA4 6152 - 0 76 182802 7 4 0 69 chain 136572 chr1 249250621 + 189333230 189334760 L1PA3long 6157 - 0 1546 26726 10 1 4 131 1 0 4 1 6 800 0 9 582 chain 49622 chr1 249250621 + 189368040 189368629 L1P1 4361 + 3737 4328 59302 413 0 3 152 1 0 23 chain 494461 chr1 249250621 + 189379772 189385786 L1PA6 6164 - 4 6164 7144 850 2 1 947 0 4 145 0 1 5 1 0 149 2 1 867 0 1 4 1 2 117 6 5 475 0 4 248 0 1 70 7 33 15 0 2 355 0 1 620 0 8 377 0 1 341 11 10 40 1 2 31 12 112 114 1 2 4 1 0 195 chain 5966 chr1 249250621 + 189394781 189394852 MER41B 635 - 88 159 185545 71 chain 28096 chr1 249250621 + 189413604 189413929 L1PA4 6152 + 5826 6151 92662 325 chain 14541 chr1 249250621 + 189415531 189415701 L1PA5 6144 - 390 560 142751 170 chain 33341 chr1 249250621 + 189415701 189416080 L1PA5 6144 + 5764 6143 78673 379 chain 36740 chr1 249250621 + 189430402 189430846 L1PA7 6471 + 6021 6464 73897 383 0 2 53 3 0 5 chain 11176 chr1 249250621 + 189436037 189436157 L1PA4 6152 + 6031 6151 155534 120 chain 541653 chr1 249250621 + 189437866 189443898 L1PA3long 6157 - 0 6156 2568 1800 0 1 3233 3 1 216 1 129 62 0 1 233 5 0 328 0 1 151 chain 11791 chr1 249250621 + 189444968 189445130 THE1B 368 - 205 368 153089 76 10 11 76 chain 160107 chr1 249250621 + 189451693 189453807 L1PA8 5853 + 3755 5853 23325 161 0 7 416 18 3 122 10 0 337 0 1 203 0 6 346 0 1 163 1 0 15 1 2 26 1 0 43 2 0 72 1 0 4 6 5 20 0 1 34 1 0 16 2 1 28 36 0 13 0 36 16 chain 44891 chr1 249250621 + 189457139 189457653 MER9a3 513 - 0 513 63188 355 1 0 158 chain 16634 chr1 249250621 + 189474438 189474716 THE1D 372 + 91 372 136574 75 24 27 35 12 0 7 10 22 115 chain 23819 chr1 249250621 + 189498222 189498511 AluSc 308 + 9 294 111367 66 4 0 219 chain 39002 chr1 249250621 + 189507553 189508072 MER41C 542 + 0 542 70743 49 0 1 147 0 1 5 1 0 103 13 34 109 0 1 92 chain 22435 chr1 249250621 + 189526912 189527249 THE1A 353 + 0 330 118321 106 23 17 77 13 12 118 chain 51688 chr1 249250621 + 189529447 189530098 LTR12 884 - 187 884 57824 165 0 7 148 2 0 31 5 6 244 0 41 30 1 0 25 chain 4032 chr1 249250621 + 189552603 189552652 LTR41 747 + 572 621 206890 49 chain 27147 chr1 249250621 + 189587621 189588008 L1PA8 5853 + 5473 5853 95766 91 0 2 5 6 3 34 2 0 73 1 0 6 2 1 52 2 1 19 1 0 93 chain 38340 chr1 249250621 + 189590665 189591228 L1PA8 5853 + 5294 5849 71666 221 3 0 22 0 1 11 1 0 13 1 0 31 16 15 74 6 11 15 1 0 4 6 1 22 7 6 22 1 0 86 chain 3722 chr1 249250621 + 189594436 189594478 L1PB4 2604 - 149 191 211602 42 chain 12601 chr1 249250621 + 189603647 189603947 THE1B 368 - 62 368 149832 62 12 20 10 0 4 11 33 25 36 58 45 9 0 15 69 chain 71367 chr1 249250621 + 189613037 189614109 MER11A 1151 - 6 1151 47759 70 5 9 78 8 9 37 5 6 15 0 1 36 18 0 22 43 0 26 0 26 31 1 2 87 5 6 145 0 1 52 6 7 33 9 10 108 0 2 32 7 3 63 1 0 74 0 99 55 chain 37969 chr1 249250621 + 189618855 189619288 L1PA4 6152 + 5664 6097 72175 151 1 0 223 0 1 58 chain 36701 chr1 249250621 + 189631331 189631802 LTR10F 562 + 0 562 73958 144 0 87 112 1 2 69 0 3 145 chain 27555 chr1 249250621 + 189647455 189647762 AluYk4 311 - 1 310 94489 29 0 2 278 chain 14017 chr1 249250621 + 189655537 189655903 L1PB1 5432 - 5 324 144518 4 1 0 9 1 0 9 2 1 13 9 8 13 1 0 24 2 0 15 1 0 4 2 0 30 24 1 16 1 0 44 31 30 39 18 12 16 2 1 24 5 0 6 chain 110327 chr1 249250621 + 189686666 189687991 LTR12C 1709 - 0 1708 34115 167 0 102 212 0 4 106 10 7 97 0 278 244 0 1 239 0 1 250 chain 57996 chr1 249250621 + 189691049 189691932 MER4E 760 + 0 760 53977 17 4 0 134 12 15 171 127 5 418 chain 128558 chr1 249250621 + 189693257 189694835 L1PA7 6471 - 6 1575 28431 6 4 0 713 0 1 124 2 1 103 1 0 397 6 4 124 10 9 34 1 0 53 chain 33250 chr1 249250621 + 189716385 189716761 L1PA4 6152 + 5775 6152 78802 216 1 0 4 1 3 154 chain 552364 chr1 249250621 + 189723933 189730078 L1PA3long 6157 + 0 6157 1151 70 0 1 626 0 7 3714 7 8 1582 1 2 140 0 2 5 chain 7623 chr1 249250621 + 189741004 189741100 MSTB 430 + 334 430 173392 96 chain 12259 chr1 249250621 + 189783353 189783578 L1PA8 5853 + 5633 5850 151158 49 1 0 11 7 6 41 2 1 5 0 1 4 1 0 9 30 25 65 chain 16447 chr1 249250621 + 189799270 189799496 L1P3 4156 + 3068 3289 137073 15 7 2 204 chain 10635 chr1 249250621 + 189802863 189803037 MER75B 242 - 0 177 157674 24 3 4 35 6 8 30 1 0 19 1 2 55 chain 23205 chr1 249250621 + 189815922 189816221 AluSq10 312 + 9 309 114665 49 4 5 246 chain 40005 chr1 249250621 + 189832473 189832899 L1PA2 6032 + 5606 6032 69311 426 chain 37741 chr1 249250621 + 189848289 189848734 L1PA7 6471 + 6012 6457 72498 445 chain 17400 chr1 249250621 + 189851144 189851449 THE1B 368 + 0 338 134512 30 12 40 99 1 0 21 7 10 14 33 36 88 chain 4891 chr1 249250621 + 189861586 189861652 MADE1 96 + 12 96 196361 20 0 17 20 0 1 26 chain 28745 chr1 249250621 + 189874920 189875333 THE1D-int 1627 - 1233 1599 90151 116 0 6 52 0 2 79 55 0 111 chain 67284 chr1 249250621 + 189893576 189894682 L1PA15 4387 + 3027 4184 49529 138 31 26 147 8 34 266 0 1 11 1 2 60 38 0 87 22 20 11 4 0 48 0 1 12 3 1 40 1 0 33 1 0 8 12 7 21 22 103 27 1 0 53 chain 7910 chr1 249250621 + 189957146 189957273 L1MA3 4352 - 1891 2023 171585 77 21 26 29 chain 374399 chr1 249250621 + 189977936 189983214 L1PB1 5432 + 63 5417 10944 184 0 1 305 7 12 168 0 1 117 0 5 83 0 166 156 4 5 129 1 0 7 2 0 5 26 11 6 0 4 152 0 1 266 18 19 81 4 6 66 6 0 153 0 1 78 0 2 246 0 1 93 13 17 4 1 0 206 1 2 98 4 1 499 2 0 306 5 7 79 8 12 59 9 0 109 7 6 23 0 1 63 0 1 211 1 2 206 0 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192218084 192218580 L1PA5 6144 + 5643 6139 65057 496 chain 30647 chr1 249250621 + 192223419 192223783 L1PA7 6471 - 5 367 83126 7 2 0 355 chain 5136 chr1 249250621 + 192262078 192262186 L1MA2 4263 - 158 263 193716 17 7 11 17 23 16 44 chain 75532 chr1 249250621 + 192277082 192278432 MER11A 1151 - 9 1151 45755 50 12 11 107 3 4 37 1 0 13 0 35 6 35 0 17 3 0 56 2 1 245 1 0 171 0 1 60 0 2 25 14 9 67 299 0 67 1 100 58 chain 9048 chr1 249250621 + 192359986 192360095 MER67C 710 + 191 300 165328 109 chain 16166 chr1 249250621 + 192360926 192361234 L1PA17 2846 + 2392 2693 137856 100 66 43 63 1 22 12 1 0 18 1 0 36 3 0 7 chain 29506 chr1 249250621 + 192363471 192363824 L1PA8A 6298 - 248 602 86615 41 0 1 312 chain 82829 chr1 249250621 + 192381008 192381930 L1PA5 6144 - 1464 2385 42335 679 1 0 242 chain 126406 chr1 249250621 + 192381930 192383379 L1PA5 6144 + 4682 6138 28969 459 4 7 151 8 12 827 chain 34086 chr1 249250621 + 192383575 192383980 L1PA7 6471 + 6061 6465 77489 75 0 1 322 2 0 6 chain 19679 chr1 249250621 + 192385040 192385254 L1PA4 6152 + 5937 6151 128167 214 chain 8043 chr1 249250621 + 192388190 192388360 MER58A 224 + 45 216 170794 63 56 57 51 chain 64381 chr1 249250621 + 192415249 192416103 L1PA8A 6298 + 5445 6291 50851 27 2 1 5 0 1 10 0 3 76 0 2 562 0 3 5 17 0 27 1 2 21 1 2 27 1 0 72 chain 90422 chr1 249250621 + 192433923 192434998 L1PA6 6164 - 2 1076 39501 764 3 0 61 0 1 144 0 1 103 chain 267370 chr1 249250621 + 192450306 192453260 L1PA3long 6157 - 0 2944 15322 2006 11 0 888 0 1 49 chain 125536 chr1 249250621 + 192453260 192454648 L1HS 6032 + 1705 3093 29152 1388 chain 38488 chr1 249250621 + 192456076 192456510 L1PA5 6144 - 0 434 71454 434 chain 98523 chr1 249250621 + 192467272 192468755 LTR12C 1709 - 0 1709 37146 84 7 6 58 0 4 7 10 9 53 0 7 253 11 4 20 0 1 70 0 129 50 42 1 99 0 118 136 25 0 53 38 45 82 3 0 5 0 2 14 18 61 45 1 2 30 13 5 256 chain 558548 chr1 249250621 + 192469714 192475742 L1PA2 6032 + 3 6030 449 3564 1 0 2463 chain 23034 chr1 249250621 + 192477530 192477822 AluY 311 + 12 306 115474 28 3 0 89 1 2 75 0 1 69 1 4 26 chain 32029 chr1 249250621 + 192477940 192478371 MER57A1 433 - 0 433 80820 156 1 0 33 0 1 108 15 14 78 0 3 40 chain 166679 chr1 249250621 + 192500573 192502512 L1PA6 6164 - 3 2400 22436 1517 0 1 95 7 463 130 0 1 190 chain 43046 chr1 249250621 + 192506335 192506895 L1PA7 6471 - 4 561 65360 146 0 1 113 11 7 290 chain 71868 chr1 249250621 + 192506895 192507753 L1PA7 6471 + 4977 5840 47532 337 0 2 307 3 0 110 1 7 100 chain 4735 chr1 249250621 + 192518121 192518180 MER33 330 - 271 330 198106 59 chain 14885 chr1 249250621 + 192587283 192587449 L1PA4 6152 + 5975 6141 141669 166 chain 355046 chr1 249250621 + 192589952 192594077 L1PA5 6144 - 3 4098 11474 846 0 4 60 22 0 204 0 3 418 0 1 324 0 2 476 8 0 199 0 1 100 0 1 341 1 0 535 11 1 76 3 2 31 0 1 202 1 0 267 chain 8674 chr1 249250621 + 192594077 192594173 L1PA5 6144 + 1945 2041 165416 96 chain 19460 chr1 249250621 + 192623020 192623237 L1PA5 6144 + 5922 6139 128786 217 chain 494073 chr1 249250621 + 192632097 192638199 L1PA6 6164 - 2 6139 7169 146 1 2 10 1 2 175 0 1 333 4 5 173 0 1 51 1 0 614 1 0 518 1 0 426 0 3 434 0 4 74 0 1 239 2 0 364 0 4 143 0 3 101 1 3 60 6 7 306 0 1 4 2 1 71 8 9 384 0 1 10 9 13 45 0 5 295 0 1 132 5 7 75 0 4 77 0 17 218 0 1 19 7 6 114 19 0 195 28 29 200 chain 4878 chr1 249250621 + 192643789 192643847 L1MB1 2102 - 104 162 196504 58 chain 494101 chr1 249250621 + 192652086 192657973 L1PA5 6144 - 0 6144 7164 308 0 1 113 0 2 1253 0 1 130 0 2 200 3 1 575 0 240 739 1 3 261 0 1 163 13 6 400 1 2 573 9 0 621 0 1 79 4 1 256 3 4 13 34 60 135 chain 26533 chr1 249250621 + 192661679 192662034 THE1B 368 - 0 367 97920 75 1 0 101 2 0 20 1 0 61 3 4 50 1 16 40 chain 14062 chr1 249250621 + 192663471 192663660 THE1B 368 - 0 187 144346 34 0 1 40 1 0 101 2 0 11 chain 44901 chr1 249250621 + 192684522 192685273 L1M1 2793 + 668 1382 63175 34 95 73 27 1 0 29 2 0 11 1 0 33 32 26 100 0 1 178 6 5 63 2 0 27 3 0 107 chain 8310 chr1 249250621 + 192708388 192708525 L1MA7 2200 + 1791 1937 169340 12 12 21 23 0 3 5 3 0 82 chain 33134 chr1 249250621 + 192708555 192709066 MER51A 677 + 0 661 79009 29 11 12 134 1 136 52 0 1 24 0 2 53 9 8 35 0 16 25 1 0 8 2 4 44 8 0 13 1 4 61 chain 2172 chr1 249250621 + 192720829 192721370 LTR12D 1347 + 608 1075 236955 13 79 1 24 402 406 23 chain 23270 chr1 249250621 + 192723717 192724007 L1PA4 6152 + 5868 6143 114340 200 15 0 75 chain 367274 chr1 249250621 + 192747510 192752846 L1PB1 5432 - 13 5357 11175 15 1 0 13 1 0 21 1 0 24 2 0 20 3 0 25 10 0 5 1 0 16 1 0 42 20 18 53 2 0 9 6 2 9 1 0 13 1 0 19 307 0 10 1 2 247 18 21 202 4 0 277 1 0 185 0 1 129 0 1 129 5 0 166 73 24 142 0 1 24 0 1 171 0 1 567 11 0 267 1 5 49 8 0 74 0 3 69 11 14 361 15 28 31 36 437 74 15 0 7 4 5 91 0 2 607 0 1 85 1 0 20 7 19 157 9 1 23 1 6 10 13 9 194 6 0 7 0 7 8 4 0 68 chain 43924 chr1 249250621 + 192760314 192760860 L1PA8 5853 + 5308 5848 64302 6 0 1 249 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 88 chain 11042 chr1 249250621 + 192763390 192763534 LTR36 617 + 457 601 156047 33 0 1 24 0 1 20 2 0 65 chain 7205 chr1 249250621 + 192787454 192787597 MER33 330 - 37 181 176032 14 31 33 88 1 0 9 chain 200742 chr1 249250621 + 192797307 192799672 L1PA7 6471 + 4074 6454 19160 24 0 1 172 0 11 68 0 4 726 1 0 349 9 0 7 0 9 176 1 0 674 3 4 155 chain 5918 chr1 249250621 + 192809091 192809159 MER4D 903 - 835 903 186012 68 chain 170918 chr1 249250621 + 192825471 192827528 SVA_D 2077 + 0 2076 21954 58 1 3 43 0 27 52 0 2 538 0 3 35 3 0 142 2 0 8 0 36 87 2 4 60 49 0 158 49 0 83 0 50 687 chain 2760 chr1 249250621 + 192826502 192826538 SVA_D 2077 + 1352 1388 115998 36 chain 4067 chr1 249250621 + 192826709 192826758 SVA_D 2077 + 1383 1481 112284 5 0 1 7 0 48 37 chain 36029 chr1 249250621 + 192850210 192850668 L1PA8 5853 + 5395 5847 74861 169 1 0 46 2 0 48 0 1 20 1 0 8 2 1 52 2 1 19 1 0 87 chain 18214 chr1 249250621 + 192852531 192852788 MER1B 344 + 88 344 132299 123 9 5 51 12 15 62 chain 64751 chr1 249250621 + 192855551 192856320 LTR17 781 - 8 781 50678 61 0 1 37 0 1 345 0 1 20 10 0 179 0 9 75 0 2 42 chain 3703 chr1 249250621 + 192860291 192860386 MER52C 1267 - 249 393 211897 22 14 23 17 17 57 25 chain 58631 chr1 249250621 + 192864323 192865106 LTR12 884 - 0 884 53623 175 1 0 243 7 11 78 2 0 36 0 132 67 32 0 142 chain 5636 chr1 249250621 + 192875779 192875886 MER3 215 - 98 206 188694 44 24 25 39 chain 12395 chr1 249250621 + 192876311 192876444 L1PA3long 6157 + 6024 6157 150656 133 chain 32321 chr1 249250621 + 192879198 192879560 L1PA5 6144 + 5775 6144 80326 351 0 7 11 chain 53722 chr1 249250621 + 192880759 192881494 LTR12_ 688 + 0 665 56524 121 0 25 341 95 0 178 chain 9510 chr1 249250621 + 192890564 192890713 MER2 342 + 82 248 163015 12 0 3 5 4 7 17 1 2 16 0 10 94 chain 11626 chr1 249250621 + 192927530 192927667 MLT2B2 565 + 0 137 153792 137 chain 23594 chr1 249250621 + 192929822 192930533 THE1C 375 + 0 374 112609 81 4 5 41 11 8 68 25 28 22 337 0 96 1 0 25 chain 8794 chr1 249250621 + 192932121 192932355 L1MA9 1812 + 22 252 166676 9 4 0 36 2 0 69 91 93 23 chain 4926 chr1 249250621 + 192942322 192942467 L1PB3 3668 - 48 179 195973 7 1 0 9 12 9 13 2 1 12 11 6 26 11 9 25 2 0 14 chain 187632 chr1 249250621 + 192946442 192951031 Charlie3 2679 + 110 2670 20279 40 1 0 133 0 1 115 1 0 95 20 22 204 1 5 23 0 6 47 9 12 118 2 1 233 1 2 135 15 0 11 2024 7 203 9 8 713 0 3 118 0 1 42 0 1 31 15 0 163 2 0 5 9 11 51 chain 11770 chr1 249250621 + 192947648 192947820 LTR7 482 - 0 173 153174 45 26 27 101 chain 69352 chr1 249250621 + 192947841 192948771 HERVH-int 3825 - 2134 3047 48659 262 9 0 180 45 15 47 0 1 4 1 0 13 1 0 19 0 1 261 6 28 82 chain 110347 chr1 249250621 + 192955858 192957184 LTR12C 1709 + 0 1709 34109 224 0 1 211 0 1 68 8 9 136 0 278 136 5 4 43 1 0 6 3 1 106 0 4 168 0 102 211 chain 72803 chr1 249250621 + 192968111 192969109 L1PA8 5853 + 4875 5853 47123 134 0 2 430 1 2 5 0 1 34 28 10 69 1 0 48 2 0 68 17 15 39 0 1 7 2 1 19 1 0 93 chain 16455 chr1 249250621 + 192974252 192974560 L1PA14 3548 + 3194 3485 137050 20 8 7 64 1 0 14 1 0 43 5 1 36 4 2 12 5 3 18 0 1 39 10 4 7 1 0 20 chain 105897 chr1 249250621 + 193001388 193002647 L1PA7 6471 + 5191 6457 35282 380 0 1 35 8 7 826 0 7 10 chain 19243 chr1 249250621 + 193014438 193014806 MSTB 430 + 26 415 129402 96 0 1 24 113 131 85 0 2 50 chain 106951 chr1 249250621 + 193042877 193044074 L1PA4 6152 - 9 1211 34990 324 1 2 515 0 4 357 chain 22745 chr1 249250621 + 193046426 193046830 THE1C 375 - 0 375 116848 74 67 34 63 0 3 12 1 0 10 0 2 89 9 0 6 9 18 64 chain 25241 chr1 249250621 + 193085735 193086045 AluY 311 + 0 305 103523 123 8 3 179 chain 60545 chr1 249250621 + 193176126 193177014 MER11A 1151 - 0 960 52551 30 0 2 28 7 6 11 0 4 75 0 1 50 24 0 51 1 59 19 7 8 58 0 4 40 1 2 12 17 20 118 8 21 227 0 11 66 1 0 37 chain 89952 chr1 249250621 + 193194045 193195478 L1PB1 5432 - 10 1365 39666 18 1 0 13 1 0 5 6 16 24 24 19 19 27 14 11 7 6 41 18 16 52 2 0 7 27 21 26 41 15 391 1 0 5 0 2 75 3 0 17 2 0 6 0 6 47 1 0 209 22 4 50 0 3 107 18 0 64 0 1 45 chain 59391 chr1 249250621 + 193195500 193196331 L1PB 1623 - 623 1517 53182 342 9 10 132 0 2 27 1 0 62 8 7 19 2 1 123 7 6 65 1 67 20 1 0 5 1 0 6 chain 32310 chr1 249250621 + 193274004 193274389 LTR12C 1709 - 0 1709 80354 171 0 1324 214 chain 27384 chr1 249250621 + 193330466 193331008 L1PB1 5432 + 4929 5422 95016 101 16 15 49 0 4 6 31 10 23 1 0 10 1 0 10 8 4 6 2 0 52 1 0 18 2 1 43 1 0 15 1 0 4 19 8 19 11 8 11 2 0 24 1 0 21 1 0 8 6 5 18 chain 42844 chr1 249250621 + 193344216 193344765 MLT2A2 560 - 0 560 65603 146 8 19 395 chain 296615 chr1 249250621 + 193344765 193350502 HERVL-int 5654 - 0 4012 13610 73 0 3 54 16 22 73 0 1 74 0 1 390 6 7 198 1 2 344 0 24 249 0 13 182 1854 26 46 0 1 258 0 1 63 15 16 551 0 2 17 2 3 90 1 0 215 9 29 560 11 45 209 8 1 10 5 6 153 chain 9991 chr1 249250621 + 193346435 193346554 THE1C 375 + 256 375 160624 119 chain 19505 chr1 249250621 + 193350502 193350752 AluY 311 + 29 283 128642 169 5 9 76 chain 38171 chr1 249250621 + 193352502 193353075 MLT2A2 560 - 0 560 71885 147 1 12 26 31 8 21 14 14 152 12 11 169 chain 124199 chr1 249250621 + 193353940 193355308 L1PA3long 6157 - 8 1379 29628 251 0 1 512 0 2 605 chain 25177 chr1 249250621 + 193364968 193365235 AluYf4 310 + 36 303 103862 267 chain 8202 chr1 249250621 + 193375671 193375770 L1MA4 2864 - 201 300 169942 99 chain 135438 chr1 249250621 + 193397660 193399262 L1P1 4361 - 257 1849 26932 427 3 0 410 3 0 96 2 0 12 2 0 647 chain 29246 chr1 249250621 + 193400531 193400981 LTR44 473 - 26 473 87816 74 11 13 100 4 27 20 5 6 42 30 1 164 chain 67531 chr1 249250621 + 193406016 193406803 SVA_C 1631 - 0 780 49426 301 6 0 76 1 0 250 8 9 82 1 0 62 chain 17510 chr1 249250621 + 193406815 193407095 L1M1 2793 - 1699 1976 134238 91 1 0 87 25 26 51 11 8 14 chain 201410 chr1 249250621 + 193414112 193416316 L1PA3long 6157 - 0 2206 19111 78 0 1 75 0 1 1202 0 1 840 1 0 8 chain 6384 chr1 249250621 + 193417357 193417434 MER47B 469 + 230 307 182154 77 chain 3725 chr1 249250621 + 193447063 193447105 MER58B 340 - 13 55 211559 42 chain 41838 chr1 249250621 + 193461554 193462098 MLT2A2 560 + 0 548 66842 157 3 4 238 1 5 121 4 3 20 chain 326825 chr1 249250621 + 193477864 193482064 L1PA8 5853 - 5 4228 12310 88 4 3 16 2 1 51 1 0 10 1 0 22 2 0 49 2 0 44 1 0 39 16 22 404 0 3 8 3 6 28 2 0 5 0 2 34 8 7 18 0 4 714 1 0 55 1 0 22 1 3 38 0 3 180 0 2 61 1 3 510 5 8 167 1 0 254 3 0 5 0 6 44 0 1 26 5 4 328 4 3 57 0 5 114 1 2 14 1 0 215 0 4 118 14 6 175 0 2 20 1 4 186 chain 38101 chr1 249250621 + 193501352 193502011 L1PA15 4387 + 3724 4353 71979 7 5 0 72 7 9 78 2 0 42 1 0 61 7 3 102 22 21 11 1 0 55 1 0 19 5 1 5 2 0 7 1 0 45 11 8 44 3 1 11 8 3 24 chain 30673 chr1 249250621 + 193504208 193505142 L1MA3 4352 - 7 583 83087 14 3 0 3 1 0 12 1 0 25 15 22 11 3 1 22 4 0 52 0 5 42 95 64 171 1 0 36 319 0 55 16 8 33 chain 16848 chr1 249250621 + 193506412 193506743 Tigger3a 397 + 0 342 135991 20 36 43 20 58 59 42 0 3 155 chain 249860 chr1 249250621 + 193539866 193543266 L1PA8 5853 - 0 3317 16264 89 5 4 17 6 5 50 1 0 9 1 0 71 5 3 41 1 0 27 3 2 296 1 2 139 0 3 86 1 0 21 0 4 27 5 1 248 0 1 13 0 1 31 1 0 322 5 0 130 0 1 14 0 2 85 0 2 258 135 22 22 1 5 288 21 33 346 0 13 180 0 4 53 1 0 4 20 22 320 chain 7147 chr1 249250621 + 193541885 193541972 L1PA8 5853 - 3089 3176 176425 87 chain 57083 chr1 249250621 + 193543270 193543993 L1P2 5180 + 1424 2162 54485 22 4 20 570 1 0 126 chain 22589 chr1 249250621 + 193555332 193555610 AluSc8 310 + 28 309 117639 104 0 3 174 chain 476705 chr1 249250621 + 193608551 193614566 L1PA7 6471 - 4 6048 7842 146 7 0 7 1 8 25 1 0 144 2 0 125 0 2 307 4 3 79 1 0 127 0 1 147 2 1 186 0 4 62 1 2 104 0 1 459 0 4 280 0 1 10 0 1 217 27 17 77 0 1 296 2 0 68 1 5 47 4 0 125 21 34 46 0 15 129 0 2 803 1 0 73 0 1 9 2 1 100 0 5 172 2 1 309 0 1 1051 6 7 68 4 0 128 chain 20757 chr1 249250621 + 193631951 193632190 L1PA4 6152 - 9 249 124768 235 0 1 4 chain 25937 chr1 249250621 + 193639702 193640015 L1PA6 6164 - 46 359 100265 313 chain 17251 chr1 249250621 + 193642154 193642464 THE1D 372 + 0 332 134923 48 9 0 9 8 18 44 10 14 39 20 21 26 3 19 94 chain 37966 chr1 249250621 + 193659387 193659890 L1PA5 6144 - 3 450 72181 207 0 1 15 57 0 224 chain 67584 chr1 249250621 + 193659897 193660652 L1PA5 6144 + 4916 5675 49407 375 0 4 380 chain 5360 chr1 249250621 + 193680669 193680747 Tigger7 736 - 73 144 191440 27 7 0 44 chain 564839 chr1 249250621 + 193686996 193693022 L1HS 6032 - 3 6030 214 1357 0 1 4669 chain 5371 chr1 249250621 + 193701440 193701506 U3 216 - 150 216 191292 66 chain 88949 chr1 249250621 + 193711322 193712384 L1PA7 6471 - 19 1084 40025 790 1 5 36 1 0 234 chain 43044 chr1 249250621 + 193764875 193765416 L1PA8 5853 - 0 534 65362 92 2 1 19 2 1 49 1 0 14 1 0 64 2 0 49 1 0 245 chain 109091 chr1 249250621 + 193772642 193773902 L1PA5 6144 + 4871 6130 34423 423 1 0 6 1 5 270 3 0 456 1 0 99 chain 8499 chr1 249250621 + 193786158 193786267 MER57A1 433 - 0 111 168301 103 0 2 6 chain 203674 chr1 249250621 + 193791773 193794643 L1PB1 5432 + 2110 5103 18948 48 1 2 87 1 0 20 0 3 5 3 0 158 1 0 65 0 2 155 1 0 46 1 0 96 2 92 31 1 3 227 15 22 325 28 31 210 0 2 19 0 1 77 0 2 99 34 19 7 0 1 49 9 13 25 15 20 107 1 0 242 1 5 55 0 2 138 3 0 4 1 0 4 0 1 75 0 2 132 11 25 218 4 8 13 chain 78794 chr1 249250621 + 193805544 193806458 L1PA5 6144 + 5224 6141 44151 67 0 4 101 0 1 594 1 0 40 1 0 110 chain 11013 chr1 249250621 + 193810701 193811243 MSTD 398 - 31 398 156147 30 0 1 8 287 87 20 55 5 23 1 0 6 0 77 21 12 10 79 chain 23652 chr1 249250621 + 193813996 193814350 THE1C 375 + 0 375 112298 57 8 27 4 1 0 37 3 0 11 1 5 42 1 2 102 5 7 56 1 0 25 chain 4045 chr1 249250621 + 193826118 193826190 MER5A 189 - 114 187 206723 40 12 13 20 chain 44907 chr1 249250621 + 193836353 193836827 L1HS 6032 + 5555 6029 63166 474 chain 9858 chr1 249250621 + 193840991 193841099 L1PA5 6144 - 5078 5186 160376 108 chain 437349 chr1 249250621 + 193841099 193846141 L1PA5 6144 + 1065 6142 9116 98 0 1 71 1 2 92 0 4 237 0 3 235 0 2 502 0 1 249 0 4 600 1 0 861 4 6 850 0 16 383 9 13 276 3 0 343 0 1 227 chain 38620 chr1 249250621 + 193847235 193847742 L1P3 4156 - 19 522 71266 22 2 1 7 2 0 281 1 0 192 chain 9311 chr1 249250621 + 193856964 193857187 THE1D 372 + 145 372 164007 25 80 85 78 8 7 32 chain 24872 chr1 249250621 + 193867929 193868284 THE1B 368 - 12 368 105504 164 2 0 17 4 3 107 5 6 17 0 5 22 2 0 15 chain 121798 chr1 249250621 + 193887160 193888609 LTR12C 1709 - 0 1709 30442 145 0 101 181 0 1 53 0 4 107 3 1 5 1 0 115 0 159 729 10 8 100 chain 37311 chr1 249250621 + 193916666 193917097 L1PA4 6152 + 5716 6152 73069 285 1 5 32 0 1 113 chain 14643 chr1 249250621 + 193920020 193920478 MLT1A0 366 + 25 342 142447 23 13 14 87 27 28 18 201 58 89 chain 137268 chr1 249250621 + 193927305 193928863 L1PA4 6152 + 4583 6143 26593 49 1 0 666 0 4 700 2 1 140 chain 4222 chr1 249250621 + 193942013 193942089 Tigger2a 444 + 204 287 204282 19 16 23 41 chain 114526 chr1 249250621 + 193970788 193972174 LTR12C 1709 + 0 1709 32940 486 5 6 77 16 18 212 7 323 102 0 4 481 chain 395119 chr1 249250621 + 193984505 193988935 L1PA3long 6157 - 0 4432 10278 1041 0 1 479 0 1 13 0 1 1437 0 1 468 1 6 9 5 0 131 0 1 486 0 3 80 11 5 269 chain 202372 chr1 249250621 + 194005321 194007577 L1PA3long 6157 - 0 2257 19031 44 1 0 110 0 1 104 1 0 583 0 1 198 0 1 116 0 1 360 1 0 738 chain 24497 chr1 249250621 + 194033213 194033567 THE1B 368 - 0 368 107563 184 13 12 89 24 39 44 chain 11954 chr1 249250621 + 194047025 194047164 L1PA7 6471 - 509 648 152390 139 chain 37959 chr1 249250621 + 194047173 194047667 L1PA7 6471 + 5964 6457 72194 82 2 1 80 4 5 124 10 8 5 0 2 44 1 0 142 chain 32485 chr1 249250621 + 194067851 194069266 L1PB4 2604 - 51 729 80058 53 5 0 84 893 155 87 31 31 22 6 5 7 0 1 33 0 2 165 4 8 25 chain 68998 chr1 249250621 + 194085706 194086476 L1PA4 6152 - 0 775 48808 6 0 5 764 chain 22519 chr1 249250621 + 194086487 194086735 L1PA4 6152 + 5102 5350 117942 248 chain 24048 chr1 249250621 + 194099413 194099708 AluSp 311 - 12 306 110056 157 8 7 130 chain 89089 chr1 249250621 + 194126154 194127297 L1PA7 6471 - 5 1153 39971 91 8 0 6 0 8 33 4 5 185 1 2 191 2 0 151 8 9 82 6 3 69 0 8 282 1 0 23 chain 11010 chr1 249250621 + 194127300 194127451 L1PA7 6471 + 1224 1375 156173 25 0 6 7 6 0 113 chain 23918 chr1 249250621 + 194136484 194136825 THE1A 353 + 9 353 110823 95 24 26 42 1 2 179 chain 7345 chr1 249250621 + 194137828 194138115 MLT1A0 366 + 68 344 175131 35 147 150 27 4 0 38 19 9 17 chain 4683 chr1 249250621 + 194159701 194159773 L1PA7 6471 - 4 73 198712 8 2 0 34 2 1 26 chain 20441 chr1 249250621 + 194163647 194164008 THE1D 372 + 0 372 125782 76 1 2 66 80 94 16 4 0 118 chain 180131 chr1 249250621 + 194169468 194171500 L1PA4 6152 - 20 2048 20979 240 1 0 406 3 0 1382 chain 81824 chr1 249250621 + 194172646 194173713 MER11B 1079 - 15 1079 42832 160 0 1 137 6 0 50 14 10 111 37 36 242 1 5 13 0 5 35 3 0 7 0 1 251 chain 55099 chr1 249250621 + 194176077 194176775 L1PB1 5432 - 1505 2197 55643 191 26 15 11 0 1 216 5 9 249 chain 42059 chr1 249250621 + 194177857 194178799 L1PB1 5432 + 4677 5424 66546 111 78 19 24 0 8 147 15 11 90 134 27 24 3 2 6 1 0 12 5 1 8 2 0 53 18 16 44 1 0 12 18 5 30 7 4 12 8 6 21 1 0 21 1 0 13 1 0 16 1 0 4 chain 2040 chr1 249250621 + 194197949 194198017 L1MA5A 2387 - 7 70 238277 5 1 0 12 6 4 19 1 0 4 7 6 13 chain 209517 chr1 249250621 + 194227551 194229853 L1PA3long 6157 + 3855 6157 18521 1163 0 1 986 1 0 152 chain 121278 chr1 249250621 + 194232503 194234074 THE1A-int 1579 + 0 1574 30611 82 8 7 203 5 4 154 0 1 785 6 9 132 1 2 195 chain 24303 chr1 249250621 + 194234079 194234433 THE1A 353 + 0 353 108647 81 6 7 110 1 0 94 23 22 39 chain 104773 chr1 249250621 + 194241130 194242290 L1PA2 6032 - 4 1161 35552 145 13 10 1002 chain 5703 chr1 249250621 + 194242290 194242354 L1PA2 6032 + 4789 4853 180504 64 chain 27131 chr1 249250621 + 194279733 194280038 L1PA5 6144 + 5839 6144 95828 305 chain 22848 chr1 249250621 + 194281507 194281797 AluY 311 + 1 306 116350 11 4 16 25 0 2 77 0 1 173 chain 188696 chr1 249250621 + 194281981 194284071 L1PA3long 6157 - 1519 3616 20173 283 0 2 353 0 5 1454 chain 138566 chr1 249250621 + 194284071 194285618 L1PA3long 6157 + 4610 6157 26342 31 1 0 155 0 2 52 1 0 1307 chain 3785 chr1 249250621 + 194306624 194306668 MER67D 511 - 378 422 210598 44 chain 27005 chr1 249250621 + 194316854 194317206 THE1A 353 + 0 353 96265 110 1 0 95 4 6 142 chain 123245 chr1 249250621 + 194317206 194318748 THE1A-int 1579 + 0 1555 29962 237 0 1 842 11 18 60 0 5 392 chain 42577 chr1 249250621 + 194321673 194322179 MER9a1 513 + 0 508 65931 454 0 2 52 chain 96240 chr1 249250621 + 194326772 194327964 LTR12C 1709 - 0 1709 37752 119 7 31 44 4 8 279 0 4 21 0 485 140 2 1 202 0 1 374 chain 27683 chr1 249250621 + 194328609 194328942 L1PA4 6152 + 5814 6146 94104 178 8 6 4 0 1 143 chain 4292 chr1 249250621 + 194334560 194334617 L1MC4a 1092 - 643 700 203333 57 chain 26678 chr1 249250621 + 194351272 194351556 AluYf4 310 - 26 310 97399 284 chain 40612 chr1 249250621 + 194375086 194375557 L1PA7 6471 + 5999 6469 68415 322 1 0 148 chain 74158 chr1 249250621 + 194385004 194385878 MER11D 897 + 0 897 46426 118 0 1 463 5 28 172 1 0 115 chain 25396 chr1 249250621 + 194391270 194391668 LTR12F 595 + 0 562 102705 81 4 147 18 1 0 9 42 0 32 10 74 201 chain 392948 chr1 249250621 + 194391722 194396539 HERV9-int 5642 + 0 4824 10362 160 24 23 384 1 5 28 0 19 97 6 0 77 7 6 47 2 0 88 0 3 169 24 11 815 6 8 104 0 1 984 0 1 172 0 1 4 10 9 1608 chain 61045 chr1 249250621 + 194399518 194400655 LTR12D 1347 - 0 1341 52310 197 0 101 169 58 61 113 20 54 19 1 110 118 17 15 30 104 53 27 89 100 67 1 0 54 6 0 7 8 14 32 chain 96490 chr1 249250621 + 194403862 194405263 L1PA4 6152 - 11 1114 37689 77 0 9 228 311 0 519 0 4 266 chain 51451 chr1 249250621 + 194453203 194453778 L1PA4 6152 - 383 962 58006 467 0 4 108 chain 32734 chr1 249250621 + 194453790 194454161 L1PA4 6152 + 5772 6143 79635 371 chain 49198 chr1 249250621 + 194459620 194460161 L1PA3long 6157 - 0 541 59599 541 chain 34454 chr1 249250621 + 194461765 194462179 L1PA4 6152 - 9 424 76987 104 1 2 309 chain 3441 chr1 249250621 + 194467220 194467262 THE1D 372 + 104 146 216362 42 chain 16725 chr1 249250621 + 194478514 194478866 THE1D 372 + 0 368 136329 94 117 129 91 1 2 24 1 4 24 chain 209677 chr1 249250621 + 194510190 194512844 L1PA8 5853 - 6 2671 18511 86 2 1 17 1 0 51 1 0 12 2 1 16 0 1 54 2 0 12 1 3 29 1 0 500 1 0 28 0 9 18 2 0 595 0 1 145 0 1 46 7 6 105 5 4 48 0 4 142 0 4 424 0 1 84 11 10 51 0 1 155 chain 18317 chr1 249250621 + 194512844 194513053 L1PA8 5853 + 2955 3164 131761 209 chain 128490 chr1 249250621 + 194522183 194523819 L1PA7 6471 - 4 1643 28458 10 1 0 238 0 1 81 0 1 433 1 0 53 30 29 49 6 7 277 9 10 247 1 2 84 0 1 116 chain 53042 chr1 249250621 + 194523819 194524450 L1P3 4156 + 2751 3381 56830 87 1 0 543 chain 14102 chr1 249250621 + 194543986 194544186 MER107 203 + 0 203 144212 23 0 2 83 6 7 22 1 0 4 0 1 61 chain 213898 chr1 249250621 + 194575674 194578234 L1PA5 6144 - 3 2588 18236 134 1 8 10 15 8 80 1 2 221 0 11 297 0 1 285 1 0 462 1 0 395 0 13 138 0 1 519 chain 51257 chr1 249250621 + 194578235 194578856 L1PA5 6144 + 2911 3533 58152 259 1 0 164 0 2 77 1 0 17 0 1 102 chain 67529 chr1 249250621 + 194585876 194586838 LTR12 884 - 0 879 49428 175 1 0 224 40 41 24 0 1 43 2 0 121 41 0 51 41 0 199 chain 7816 chr1 249250621 + 194625890 194625982 L1PA7 6471 - 58 150 172206 92 chain 10768 chr1 249250621 + 194626756 194626871 AluY 311 + 5 120 157117 115 chain 421944 chr1 249250621 + 194628897 194634175 L1PA7 6471 + 1190 6466 9489 159 6 7 460 0 1 620 1 2 81 0 2 104 5 6 51 9 1 62 0 1 200 0 1 135 5 1 12 0 4 347 0 1 84 0 2 77 0 1 45 5 0 69 8 6 247 2 3 22 8 0 23 0 1 238 0 7 107 1 0 736 26 24 481 0 3 842 chain 15822 chr1 249250621 + 194651365 194651545 L1PA2 6032 - 4 184 138884 180 chain 21575 chr1 249250621 + 194651545 194651781 L1PA2 6032 + 5613 5849 121864 236 chain 4459 chr1 249250621 + 194652369 194652426 MER47A 366 - 304 360 201247 26 1 0 30 chain 10717 chr1 249250621 + 194654646 194654774 L1PA5 6144 - 0 129 157337 73 0 1 55 chain 11489 chr1 249250621 + 194660555 194660694 L1PA7 6471 - 1 139 154338 133 1 0 5 chain 11321 chr1 249250621 + 194686295 194686478 L1PA16 3655 + 2491 2675 154996 47 1 0 60 26 28 49 chain 72073 chr1 249250621 + 194708112 194708976 L1PA5 6144 - 15 882 47446 138 1 0 185 0 1 336 0 2 123 1 2 80 chain 65127 chr1 249250621 + 194726956 194727711 L1PA4 6152 + 5397 6152 50515 671 2 1 74 0 1 8 chain 284367 chr1 249250621 + 194731185 194734942 HERVL-int 5654 - 425 5642 14394 173 4 5 598 6 1448 46 0 3 383 0 1 24 2 0 240 7 13 297 7 8 74 0 1 6 1 0 38 6 5 150 4 5 475 1 0 707 0 7 6 1 0 126 0 1 226 6 7 54 0 1 89 chain 6299 chr1 249250621 + 194743244 194743321 LTR53 516 - 255 332 182804 77 chain 133212 chr1 249250621 + 194749535 194751467 L1PA10 4194 + 336 3444 27389 20 1 0 7 1 0 8 1 0 9 1 0 15 35 42 42 15 5 300 15 1183 22 0 1 147 10 11 74 0 4 30 0 6 171 9 10 186 0 1 19 4 0 7 33 31 27 0 4 357 3 4 4 0 1 115 2 3 242 chain 29022 chr1 249250621 + 194760868 194761172 AluYb8 318 + 0 304 88894 304 chain 4336 chr1 249250621 + 194776985 194777043 MSTA 426 + 27 86 202760 40 1 2 17 chain 17910 chr1 249250621 + 194783902 194784119 L1PA4 6152 + 5938 6152 133079 199 3 0 15 chain 8329 chr1 249250621 + 194792037 194792173 L1MA3 4352 - 8 134 169222 16 1 0 40 1 0 5 3 1 24 2 0 23 4 0 17 chain 5630 chr1 249250621 + 194793557 194793623 MLT1A 405 - 45 111 188765 66 chain 16291 chr1 249250621 + 194803131 194803335 L1PA5 6144 + 5930 6144 137501 146 0 10 58 chain 21326 chr1 249250621 + 194812960 194813241 L1PA7 6471 - 3 286 122768 7 2 0 151 8 12 113 chain 111662 chr1 249250621 + 194828013 194829376 LTR12C 1709 + 0 1709 33757 272 19 11 8 0 1 124 2 76 158 0 278 184 1 0 4 7 5 103 2 6 479 chain 31306 chr1 249250621 + 194867256 194867687 MER57A1 433 - 0 433 81983 148 21 16 6 0 7 256 chain 8024 chr1 249250621 + 194873610 194873699 L1PA3long 6157 - 1 90 170918 89 chain 98366 chr1 249250621 + 194874716 194875800 L1PA2 6032 - 1180 2265 37118 565 1 0 409 0 2 109 chain 103009 chr1 249250621 + 194875800 194876952 L1PA2 6032 + 4872 6025 35987 823 0 1 170 1 6 6 5 0 147 chain 407004 chr1 249250621 + 194890387 194895877 HERVL-int 5654 + 1 5504 9877 169 1 0 6 0 2 148 1 0 398 1 9 192 0 2 5 2 0 33 3 0 490 0 10 17 0 1 21 1 0 32 0 1 689 0 295 179 5 6 203 1 3 588 2 6 65 14 13 324 1 0 74 4 0 32 8 11 288 0 8 575 3 0 6 0 3 167 328 7 78 12 22 251 0 1 73 chain 12245 chr1 249250621 + 194896757 194896905 HERVL-int 5654 + 3396 3548 151226 106 0 4 42 chain 19094 chr1 249250621 + 194903837 194904169 THE1B 368 + 0 356 129832 42 1 16 107 58 74 10 7 0 107 chain 5043 chr1 249250621 + 194905739 194905857 THE1B 368 + 4 137 194705 40 49 64 29 chain 2143 chr1 249250621 + 194905857 194905881 THE1B 368 + 142 166 237218 24 chain 6476 chr1 249250621 + 194906006 194906082 THE1B 368 + 292 368 181423 76 chain 29030 chr1 249250621 + 194964463 194964773 AluYa5 310 - 0 310 88853 310 chain 7857 chr1 249250621 + 194988211 194988300 L1PA8 5853 - 0 89 171954 89 chain 4794 chr1 249250621 + 194990847 194990905 L1MA9 1812 - 608 666 197419 58 chain 70659 chr1 249250621 + 195011828 195012609 L1PA4 6152 + 5371 6152 48082 781 chain 101056 chr1 249250621 + 195023277 195024776 LTR12C 1709 + 0 1709 36499 31 44 53 172 7 8 12 16 19 43 0 43 76 12 0 12 0 9 271 41 0 61 0 40 128 0 41 52 0 47 89 24 0 10 18 11 162 0 102 135 1 0 82 chain 3302 chr1 249250621 + 195023973 195024014 LTR12C 1709 + 1027 1068 131896 41 chain 14219 chr1 249250621 + 195030009 195030165 L1PA4 6152 - 11 167 143818 156 chain 13102 chr1 249250621 + 195042011 195042156 L1PA5 6144 - 4 149 147835 145 chain 5936 chr1 249250621 + 195043844 195043911 LTR12F 595 + 411 478 185825 67 chain 11194 chr1 249250621 + 195055564 195055692 L1PA7 6471 - 1 129 155443 128 chain 4928 chr1 249250621 + 195068823 195068883 L1PA13 3608 + 908 968 195961 60 chain 3661 chr1 249250621 + 195070847 195070888 THE1A 353 - 2 43 212565 41 chain 355868 chr1 249250621 + 195076851 195080934 L1PA4 6152 + 2062 6151 11452 251 0 1 658 0 1 197 0 1 768 1 2 411 0 1 567 1 0 722 3 1 134 0 2 218 1 2 33 0 1 118 chain 164902 chr1 249250621 + 195107362 195109309 HERV9-int 5642 + 1931 4824 22665 465 0 2 529 0 2 81 7 942 30 0 1 536 0 5 198 0 1 101 chain 84415 chr1 249250621 + 195124768 195125686 L1PA3long 6157 - 850 1768 41752 918 chain 75825 chr1 249250621 + 195125686 195126532 L1PA3long 6157 + 5311 6157 45531 733 0 1 95 1 0 17 chain 11340 chr1 249250621 + 195144131 195144328 L1PA16 3655 - 118 315 154922 30 7 6 78 6 7 16 11 13 5 2 0 42 chain 184921 chr1 249250621 + 195146669 195148733 L1PA4 6152 + 4087 6152 20506 1958 0 1 106 chain 5534 chr1 249250621 + 195179353 195179626 L1MC1 2226 - 607 915 189719 26 26 70 15 152 143 54 chain 56384 chr1 249250621 + 195190609 195191248 L1PA5 6144 + 5489 6128 54911 639 chain 33900 chr1 249250621 + 195196355 195196764 L1PA7 6471 - 10 437 77772 139 0 15 154 1 2 13 0 2 102 chain 24416 chr1 249250621 + 195217509 195217803 AluY 311 + 13 308 107992 119 6 7 169 chain 40543 chr1 249250621 + 195240394 195240926 L1PA8 5853 + 5325 5849 68526 78 0 1 111 1 0 49 1 0 43 4 2 70 1 0 8 2 1 52 2 1 19 2 1 19 1 0 69 chain 6585 chr1 249250621 + 195315033 195315212 L1M4c 1769 + 719 891 180574 8 1 0 10 8 6 49 60 56 43 chain 72667 chr1 249250621 + 195326082 195327006 L1P3 4156 + 3208 4139 47186 250 0 3 80 0 4 77 5 6 131 1 4 70 2 0 40 0 1 233 2 0 7 2 1 24 chain 6183 chr1 249250621 + 195386178 195386260 MLT1C 463 - 2 84 183712 82 chain 371215 chr1 249250621 + 195414352 195419510 L1PB1 5432 + 16 5420 11052 465 12 269 458 5 1 19 1 0 121 0 1 5 1 0 55 15 8 26 5 10 142 7 12 58 13 11 97 2 0 72 0 4 201 42 40 51 0 1 4 1 0 139 0 1 8 0 13 185 11 0 346 7 6 168 0 1 180 1 0 265 0 4 234 0 8 116 6 5 129 0 1 246 13 14 596 5 3 288 3 0 13 39 43 8 2 0 52 1 0 18 1 0 44 1 0 15 28 16 15 12 9 10 2 0 23 5 4 15 0 3 13 1 0 16 chain 3177 chr1 249250621 + 195421258 195421294 MADE1 96 - 60 96 221391 36 chain 42618 chr1 249250621 + 195432662 195433124 L1PA3long 6157 + 5680 6142 65875 462 chain 143302 chr1 249250621 + 195452599 195454544 MER61-int 3695 - 1561 3539 25595 30 1 0 157 0 2 116 69 57 144 0 5 14 1 3 174 2 1 179 0 1 26 0 3 268 0 2 202 5 6 107 2 0 94 1 0 131 1 2 120 0 33 101 chain 70934 chr1 249250621 + 195463797 195464618 L1PA4 6152 - 9 830 47948 146 0 1 95 2 3 101 2 0 475 chain 44542 chr1 249250621 + 195479119 195479631 MER9a1 513 + 1 513 63537 512 chain 71699 chr1 249250621 + 195520232 195521022 L1PA2 6032 - 0 791 47360 637 1 2 152 chain 124641 chr1 249250621 + 195521022 195522376 L1PA2 6032 + 3903 5259 29495 262 0 2 1092 chain 113315 chr1 249250621 + 195529319 195530582 L1PA3long 6157 + 4894 6157 33274 216 0 1 273 1 0 285 1 0 266 0 1 221 chain 48074 chr1 249250621 + 195580470 195581048 L1PA5 6144 + 5560 6144 60422 35 1 7 379 1 6 5 5 0 152 chain 131943 chr1 249250621 + 195583160 195584626 L1PA4 6152 - 1 1466 27646 779 1 0 686 chain 90391 chr1 249250621 + 195589042 195590141 L1PA7 6471 + 5366 6470 39511 168 5 6 74 0 3 701 13 14 138 chain 85155 chr1 249250621 + 195616135 195617172 L1P1 4361 - 533 1582 41466 324 0 1 4 8 12 118 0 4 151 0 3 14 2 1 19 0 1 397 chain 101717 chr1 249250621 + 195617267 195618512 L1PA6 6164 + 4873 6156 36339 95 0 33 228 1 2 84 0 1 164 2 1 12 0 1 353 0 1 41 1 2 100 1 0 5 7 8 6 0 1 145 chain 146441 chr1 249250621 + 195637575 195639352 L1PA7 6471 - 7 1797 25087 88 8 0 8 0 8 400 3 0 100 3 16 59 1 0 161 1 0 317 0 5 628 chain 147347 chr1 249250621 + 195639352 195641162 L1PA7 6471 + 2836 4658 24989 24 0 1 222 0 1 183 2 10 225 2 0 22 1 2 58 1 3 152 4 3 267 1 0 476 0 1 32 2 4 136 chain 88445 chr1 249250621 + 195671334 195672402 MER11B 1079 - 16 1079 40206 193 0 4 94 6 0 510 4 0 239 0 1 22 chain 27146 chr1 249250621 + 195689000 195689424 LTR7B 505 + 0 496 95774 108 0 10 56 45 21 15 1 89 66 1 0 44 1 0 4 0 1 27 14 13 42 chain 9418 chr1 249250621 + 195690619 195691096 LTR14C 587 - 0 488 68305 114 0 3 214 15 21 72 21 23 41 chain 117112 chr1 249250621 + 195691100 195692583 LTR12C 1709 - 0 1709 32085 82 1 0 48 2 10 341 0 4 104 1 48 240 5 147 210 10 11 83 0 43 79 18 0 259 chain 1915 chr1 249250621 + 195692583 195692680 LTR14C 587 - 488 587 68305 89 0 2 8 chain 38344 chr1 249250621 + 195756096 195756583 L1PA8 5853 - 1 483 71658 111 2 1 36 13 12 11 1 0 73 3 1 237 chain 148594 chr1 249250621 + 195770224 195771902 L1PA4 6152 + 4469 6143 24807 163 1 0 38 1 2 199 1 0 662 6 3 607 chain 10935 chr1 249250621 + 195787526 195787661 L1PA16 3655 + 2949 3084 156467 135 chain 86648 chr1 249250621 + 195787662 195788715 L1PA8 5853 - 1108 2171 40905 110 0 6 5 1 2 8 1 2 739 0 1 122 0 1 67 chain 81366 chr1 249250621 + 195788715 195789797 L1PA8 5853 + 4764 5853 42995 245 0 5 63 1 0 7 1 4 15 0 3 204 0 1 210 0 3 40 1 0 44 2 0 71 21 19 46 2 1 15 1 0 93 chain 11516 chr1 249250621 + 195811336 195811638 L1PB1 5432 - 36 304 154231 5 1 0 21 1 0 24 2 0 13 2 1 7 1 0 17 33 15 7 0 1 4 1 0 43 2 1 16 2 1 42 39 32 12 1 0 6 chain 20430 chr1 249250621 + 195812879 195813310 L1PB 1623 - 47 441 125812 16 60 35 9 2 1 14 4 0 13 15 12 16 19 17 144 1 0 18 15 14 85 chain 8553 chr1 249250621 + 195817043 195817143 LTR7Y 441 - 7 108 167999 20 0 1 80 chain 8885 chr1 249250621 + 195817156 195817263 HERVH-int 3825 - 3718 3825 166211 107 chain 31395 chr1 249250621 + 195817265 195817727 LTR7 482 - 0 482 81821 174 0 1 12 0 31 39 0 1 109 19 18 11 29 17 69 chain 46853 chr1 249250621 + 195828139 195829026 L1PB1 5432 + 4582 5414 61343 47 15 7 175 6 0 121 0 3 165 18 10 4 1 0 13 7 7 13 1 0 9 62 56 7 1 0 18 5 4 21 6 0 34 75 58 16 1 0 20 2 1 13 1 0 10 chain 25297 chr1 249250621 + 195846589 195846938 THE1A 353 - 0 353 103243 240 6 5 72 10 15 21 chain 65071 chr1 249250621 + 195860832 195861587 L1PA5 6144 - 9 765 50541 250 1 0 167 0 2 337 chain 406087 chr1 249250621 + 195894123 195898450 L1HS 6032 - 3 4330 9910 4327 chain 23919 chr1 249250621 + 195944103 195944370 L1PA4 6152 + 5876 6143 110816 267 chain 23706 chr1 249250621 + 195960186 195960495 MLT2A1 477 - 169 477 112002 104 0 1 23 0 1 10 5 2 167 chain 202188 chr1 249250621 + 195968221 195970867 HERVL-int 5654 + 2988 5654 19057 40 0 1 163 9 0 20 1 12 225 1 0 193 0 35 388 3 2 55 0 1 125 24 11 12 1 2 4 1 0 214 16 14 36 0 1 730 0 3 156 4 0 174 10 8 41 chain 16873 chr1 249250621 + 195970885 195971156 MLT2A2 560 + 18 291 135910 150 56 58 65 chain 76640 chr1 249250621 + 195971158 195972043 MER11D 897 - 1 897 45148 355 12 20 141 0 3 377 chain 77181 chr1 249250621 + 195973419 195974473 MER11C 1089 - 20 1088 44870 4 0 1 144 1 0 56 0 1 18 14 12 94 1 2 38 1 0 4 1 5 112 47 46 146 1 0 69 0 4 57 0 9 246 chain 6142 chr1 249250621 + 195990814 195990916 LTR9 672 - 569 672 184056 9 1 0 26 9 11 57 chain 32622 chr1 249250621 + 196007338 196007706 L1PA5 6144 - 4 372 79813 368 chain 27349 chr1 249250621 + 196015634 196015930 L1PA3long 6157 - 996 1292 93977 296 chain 88672 chr1 249250621 + 196015930 196016923 L1PA3long 6157 + 5163 6157 40121 148 0 1 845 chain 96838 chr1 249250621 + 196030773 196031876 L1PA4 6152 + 5040 6143 37602 259 1 2 597 2 0 103 0 1 141 chain 41307 chr1 249250621 + 196051058 196051610 MER41A 554 + 0 554 67523 39 7 8 426 17 18 63 chain 4701 chr1 249250621 + 196059047 196059101 L1P4 1494 - 854 908 198519 54 chain 79411 chr1 249250621 + 196062827 196063853 L1PA8 5853 + 4838 5853 43865 103 1 0 46 0 4 19 9 5 70 5 1 480 1 0 18 0 1 23 2 0 71 1 0 9 1 0 52 2 1 19 4 3 90 chain 4119 chr1 249250621 + 196070902 196070954 HERVK22-int 3844 - 539 589 205668 13 2 0 37 chain 21618 chr1 249250621 + 196074370 196074623 L1PA5 6144 + 5890 6144 121699 104 0 1 149 chain 306673 chr1 249250621 + 196075745 196080541 L1PA7 6471 + 2648 6461 13143 154 4 5 232 3 4 307 0 1 178 1 2 38 4 5 221 4 0 297 2 1 329 0 5 182 0 1 154 980 0 59 0 1 6 1 0 792 5 3 71 8 2 441 1 0 322 chain 78440 chr1 249250621 + 196077861 196078835 LTR5_Hs 974 - 0 974 44297 63 1 0 80 3 1 368 0 4 348 1 0 110 chain 124084 chr1 249250621 + 196106902 196108342 L1PA6 6164 - 11 1440 29672 138 1 0 196 10 0 20 0 1 483 1 0 591 chain 92137 chr1 249250621 + 196109025 196110344 HUERS-P3b-int 2065 - 13 1291 38922 13 35 8 90 1 0 58 4 0 63 4 1 17 2 0 73 10 8 84 1 0 16 12 11 9 2 0 84 5 3 43 1 0 53 4 6 22 2 3 166 0 1 179 0 1 46 3 5 139 1 0 22 1 0 54 chain 31684 chr1 249250621 + 196125802 196126220 MER57A1 433 - 0 433 81347 76 0 1 66 2 0 5 0 3 244 1 14 24 chain 81960 chr1 249250621 + 196126511 196127424 L1PA3long 6157 + 5237 6152 42777 157 0 2 756 chain 55947 chr1 249250621 + 196127458 196128580 MER57-int 2662 - 209 2065 55156 17 22 16 10 6 1 77 3 0 392 305 1047 16 0 8 36 0 2 142 19 15 77 chain 9966 chr1 249250621 + 196128119 196128278 MER57-int 2662 + 979 1124 160749 88 1 2 24 16 1 30 chain 120809 chr1 249250621 + 196131856 196133381 HERVL-int 5654 + 4063 5654 30758 292 0 1 71 0 60 68 2 10 96 0 1 172 12 5 285 0 1 299 0 1 4 10 11 214 chain 30017 chr1 249250621 + 196133381 196133833 MLT2A1 477 + 0 477 84750 169 4 1 9 0 1 24 5 6 116 8 9 47 27 52 43 chain 10617 chr1 249250621 + 196142856 196142981 L1PA7 6471 - 10 135 157741 125 chain 44558 chr1 249250621 + 196146484 196146983 L1PA3long 6157 + 5638 6137 63515 499 chain 493654 chr1 249250621 + 196156419 196162567 L1PA5 6144 - 6 5863 7192 165 1 2 57 10 10 384 0 1 225 1 0 640 1 0 149 287 10 993 2 0 326 2 1 402 0 4 672 0 3 19 20 5 852 0 1 47 9 0 622 9 8 199 0 6 54 chain 25614 chr1 249250621 + 196158052 196158324 AluYf4 310 - 1 273 101658 272 chain 69119 chr1 249250621 + 196173457 196174724 L1PA8 5853 - 0 936 48754 93 2 1 18 28 27 26 3 0 9 2 1 70 6 4 32 3 0 5 0 3 49 2 0 466 321 0 40 2 0 38 0 2 52 chain 34983 chr1 249250621 + 196186139 196186602 LTR2B 499 - 0 490 76206 182 1 0 14 0 1 124 0 1 4 1 0 43 0 19 40 1 0 37 0 10 10 1 0 5 chain 567779 chr1 249250621 + 196188500 196194532 L1HS 6032 - 0 6032 40 6032 chain 10412 chr1 249250621 + 196207835 196207973 L1PA6 6164 + 6029 6162 158632 127 5 0 6 chain 7210 chr1 249250621 + 196225897 196225983 MER41B 635 + 0 86 176000 86 chain 25057 chr1 249250621 + 196263405 196263703 AluSc5 308 - 10 308 104519 298 chain 301582 chr1 249250621 + 196318839 196322190 L1PA3long 6157 - 0 3360 13342 338 0 1 510 0 4 2352 0 4 151 chain 51799 chr1 249250621 + 196338457 196339034 L1PA3long 6157 - 0 577 57756 577 chain 23468 chr1 249250621 + 196339034 196339282 L1PA3long 6157 + 5331 5579 113278 248 chain 6529 chr1 249250621 + 196345884 196345964 LTR26 622 + 60 139 181013 22 1 0 57 chain 17520 chr1 249250621 + 196379494 196379708 L1PA4 6152 + 5938 6152 134210 214 chain 37672 chr1 249250621 + 196388308 196388739 L1PA4 6152 - 1 425 72582 140 7 0 284 chain 15619 chr1 249250621 + 196408972 196409185 L1PA8 5853 + 5644 5853 139524 35 2 1 10 1 0 49 3 2 19 1 0 93 chain 3697 chr1 249250621 + 196438716 196438760 MER45A 178 - 0 44 211982 44 chain 46912 chr1 249250621 + 196453332 196453919 L1PA8A 6298 - 636 1220 61297 91 1 0 28 2 0 52 0 3 101 3 0 309 chain 41951 chr1 249250621 + 196453919 196454450 L1PA8A 6298 + 5661 6204 66682 29 0 11 258 0 1 244 chain 12492 chr1 249250621 + 196462681 196462859 L1PA7 6471 - 1 192 150276 7 2 0 74 4 1 60 1 0 4 0 19 26 chain 7562 chr1 249250621 + 196466350 196466451 MER2 342 + 85 185 173782 26 1 0 74 chain 178523 chr1 249250621 + 196473216 196475192 L1PA3long 6157 - 0 1979 21117 867 0 1 411 0 1 508 0 1 190 chain 63652 chr1 249250621 + 196491706 196492522 LTR12 884 + 0 884 51171 24 1 0 185 1 66 65 1 2 35 2 0 74 3 4 116 8 12 301 chain 24705 chr1 249250621 + 196495579 196495880 AluSc5 308 - 12 308 106406 6 6 0 104 0 1 185 chain 79598 chr1 249250621 + 196517404 196518286 L1PA3long 6157 + 5263 6149 43779 139 0 3 602 0 1 141 chain 5316 chr1 249250621 + 196530644 196530706 MER4C 627 - 0 62 191863 62 chain 11259 chr1 249250621 + 196537254 196537438 MER1B 344 - 5 210 155197 23 33 53 96 0 1 32 chain 8844 chr1 249250621 + 196561225 196561359 L1MA2 4263 + 3986 4114 166405 18 4 6 48 7 0 47 1 0 9 chain 28985 chr1 249250621 + 196562081 196562652 L1PB1 5432 - 14 483 89065 14 1 0 13 2 1 20 1 0 24 2 0 15 7 4 18 25 13 59 1 0 16 2 1 52 2 0 9 2 0 3 2 0 9 1 0 9 1 0 24 1 0 9 79 7 101 1 2 46 chain 29241 chr1 249250621 + 196565232 196565709 L1PB2 3958 - 120 584 87839 62 8 7 12 10 0 7 17 21 32 0 1 15 1 0 63 1 0 73 5 4 90 2 0 13 8 6 58 chain 30032 chr1 249250621 + 196571900 196572215 AluYb8 318 - 3 318 84714 315 chain 19909 chr1 249250621 + 196581376 196581622 THE1A-int 1579 + 1333 1579 127450 12 9 8 21 0 1 204 chain 20922 chr1 249250621 + 196581622 196581995 THE1A 353 + 0 353 124203 15 2 0 32 0 1 32 46 45 98 8 0 7 23 12 33 0 1 77 chain 152360 chr1 249250621 + 196663131 196665143 L1PA8 5853 - 0 2008 24296 93 1 0 18 63 60 72 2 0 46 1 0 43 2 3 289 0 1 219 2 0 244 7 5 344 0 1 36 10 9 34 5 6 270 0 4 211 chain 3961 chr1 249250621 + 196665684 196665728 L1PA4 6152 - 1549 1593 207968 44 chain 137849 chr1 249250621 + 196665729 196667295 L1PA4 6152 + 4584 6152 26506 992 9 10 232 0 1 333 chain 54461 chr1 249250621 + 196667295 196668007 L1P3 4156 + 3389 4107 55958 76 0 3 15 0 1 57 8 12 55 0 1 141 8 5 352 chain 3731 chr1 249250621 + 196670672 196670714 LTR26 622 + 530 572 211439 42 chain 41335 chr1 249250621 + 196681763 196682218 L1PA3long 6157 - 15 470 67489 455 chain 10726 chr1 249250621 + 196723472 196723668 L1MA3 4352 - 46 239 157297 18 8 6 23 17 15 8 4 0 28 5 10 85 chain 13629 chr1 249250621 + 196732243 196732406 L1PA4 6152 + 5989 6152 145859 163 chain 552329 chr1 249250621 + 196749933 196756079 L1PA3long 6157 - 0 6151 1157 2088 0 1 958 0 1 1871 0 1 162 0 1 365 1 2 701 chain 113140 chr1 249250621 + 196764586 196766207 THE1B-int 1605 + 0 1605 33339 13 4 0 39 5 6 94 2 0 103 0 1 61 0 2 23 0 2 89 35 19 158 20 0 143 3 12 85 9 10 76 5 6 200 0 4 228 32 20 5 0 3 42 0 13 142 0 1 5 chain 11514 chr1 249250621 + 196778523 196778997 LTR12C 1709 + 728 1485 154237 109 1 0 13 0 4 23 306 586 22 chain 325877 chr1 249250621 + 196783205 196787196 L1PA6 6164 - 8 6163 12352 329 0 1 171 2 0 339 0 4 16 0 1 505 11 1 27 0 8 295 4 0 1230 1 0 4 0 1 2 0 2157 46 1 0 172 0 1 138 1 0 128 4 15 314 2 1 249 chain 3216 chr1 249250621 + 196792917 196792977 L1MC1 2226 + 2135 2193 220631 13 5 4 33 1 0 8 chain 22343 chr1 249250621 + 196799985 196800281 AluY 311 + 10 296 118726 117 21 17 146 6 0 6 chain 10726 chr1 249250621 + 196808155 196808351 L1MA3 4352 - 46 239 157296 18 8 6 23 17 15 8 4 0 28 5 10 85 chain 13629 chr1 249250621 + 196816920 196817083 L1PA4 6152 + 5989 6152 145858 163 chain 153225 chr1 249250621 + 196831036 196833074 L1PA8 5853 - 3 2035 24197 15 23 23 14 4 0 38 1 0 17 1 0 50 17 15 70 5 3 41 1 0 17 0 1 155 0 2 359 4 5 16 0 2 121 11 0 7 3 0 157 11 24 880 chain 115013 chr1 249250621 + 196833074 196834555 L1PA8 5853 + 2264 3746 32702 461 0 1 32 0 1 128 0 1 29 0 2 262 0 1 4 1 0 132 13 18 165 17 4 21 1 2 10 0 2 46 0 1 159 chain 146227 chr1 249250621 + 196849118 196850803 L1P1 4361 - 20 1704 25127 12 2 1 23 1 0 155 1 0 254 0 1 736 1 0 172 1 3 327 chain 116021 chr1 249250621 + 196889473 196891100 THE1B-int 1605 + 0 1605 32446 13 4 0 304 0 2 114 35 19 182 29 9 110 3 12 85 9 10 76 5 6 432 32 20 5 0 3 42 0 13 142 0 1 5 chain 9364 chr1 249250621 + 196903309 196903513 LTR12C 1709 + 773 1183 163740 64 1 0 20 66 273 53 chain 2115 chr1 249250621 + 196903530 196903558 LTR12C 1709 + 1159 1187 237510 28 chain 511579 chr1 249250621 + 196905102 196911225 L1PA6 6164 - 8 6163 6018 329 0 1 165 2 0 345 0 4 16 0 1 58 1 0 447 11 1 27 0 8 801 0 1 762 0 1 693 1 3 216 0 1 419 12 16 722 0 17 4 0 1 78 1 0 311 1 0 126 1 0 331 2 1 195 1 9 45 chain 10761 chr1 249250621 + 196933246 196933383 L1PREC2 3366 - 1389 1526 157153 137 chain 505958 chr1 249250621 + 196955498 196961787 L1PA6 6164 - 5 6162 6467 7 9 0 133 5 6 693 0 8 277 1 0 268 7 1 864 0 1 198 1 0 179 0 1 330 9 11 5 1 0 701 0 2 149 2 1 641 1 7 172 0 1 67 0 1 503 0 1 203 7 6 255 8 7 156 146 10 116 43 44 132 chain 20754 chr1 249250621 + 196970683 196970911 L1PA4 6152 - 0 228 124780 228 chain 4016 chr1 249250621 + 197013120 197013163 L1P2 5180 - 5135 5178 207130 43 chain 310410 chr1 249250621 + 197013472 197017262 L1PA6 6164 + 2334 6151 12988 748 1 2 100 2 1 30 0 1 12 26 24 121 0 1 323 5 0 11 0 1 616 0 1 142 0 3 373 2 3 54 0 1 394 11 15 4 0 1 112 0 15 296 0 1 263 1 5 143 chain 35553 chr1 249250621 + 197020885 197021341 L1PA8A 6298 - 691 1143 75472 32 2 1 84 2 1 18 1 0 263 1 0 53 chain 15046 chr1 249250621 + 197021341 197021522 L1PA8A 6298 + 5619 5800 140740 181 chain 23811 chr1 249250621 + 197022403 197022765 THE1B 368 + 0 368 111410 107 2 3 59 1 0 29 46 52 118 chain 54475 chr1 249250621 + 197038119 197038783 LTR12_ 688 - 0 688 56046 120 0 1 374 0 24 144 1 0 25 chain 320578 chr1 249250621 + 197040400 197045217 L1PB1 5432 + 981 5418 12573 42 1 5 269 1 0 4 0 1 92 26 11 482 0 4 28 21 12 156 8 11 39 5 6 78 10 14 77 1 0 189 13 10 54 7 1 87 0 5 44 339 0 35 0 1 98 15 19 149 6 4 127 0 6 20 6 2 47 0 1 512 1 0 7 6 0 95 0 4 162 1 0 44 3 0 179 0 1 90 3 0 222 0 15 78 5 1 117 0 1 45 0 3 18 0 2 207 21 16 43 6 0 21 0 1 8 1 2 8 4 1 24 1 0 7 2 1 12 18 12 50 2 1 16 2 1 43 1 0 13 68 52 24 10 9 12 1 0 13 5 4 10 chain 33670 chr1 249250621 + 197066137 197066611 LTR15 485 + 1 478 78144 73 5 6 27 0 1 7 0 2 7 4 0 26 0 2 22 0 2 96 7 11 115 2 0 39 1 0 5 2 0 36 chain 4194 chr1 249250621 + 197108645 197108706 L1MA4 2864 - 57 124 204629 34 3 9 24 chain 14942 chr1 249250621 + 197134928 197135106 L1P3 4156 + 0 178 141494 178 chain 16833 chr1 249250621 + 197135110 197135331 L1PA7 6471 + 6250 6470 136033 71 4 3 146 chain 5570 chr1 249250621 + 197156862 197157069 L1MC1 2226 + 1980 2119 189372 12 2 0 46 58 0 9 46 40 16 3 1 15 chain 77045 chr1 249250621 + 197172947 197174100 L1PB1 5432 - 9 1150 44947 19 1 0 12 1 0 22 1 0 22 70 54 13 1 0 44 1 0 16 2 1 53 10 9 14 3 2 4 1 0 25 1 0 7 11 8 162 0 12 20 5 6 266 0 3 140 5 6 201 chain 7041 chr1 249250621 + 197180518 197180629 MLT1A0 366 - 49 187 177179 69 4 6 15 1 26 22 chain 118099 chr1 249250621 + 197196211 197197869 THE1A-int 1579 - 12 1579 31772 282 92 1 230 32 19 66 0 3 19 0 1 201 8 17 225 0 1 4 1 0 58 23 24 109 0 1 58 1 0 57 1 0 191 chain 5245 chr1 249250621 + 197198818 197198883 L1PA16 3655 - 135 200 192578 65 chain 334260 chr1 249250621 + 197209352 197213460 L1PA7 6471 - 3 4159 12045 140 1 2 231 0 3 276 0 14 96 1 2 83 1 0 638 1 0 4 0 17 7 8 0 129 0 1 6 0 1 152 1 3 134 0 4 79 1 10 431 0 3 21 0 1 450 3 1 32 1 0 49 0 1 70 5 3 187 0 1 82 0 4 414 0 1 36 8 7 330 chain 7838 chr1 249250621 + 197225862 197225947 L1PA2 6032 + 5947 6032 172086 85 chain 57949 chr1 249250621 + 197231831 197232694 L1PA16 3655 - 76 942 54004 82 2 1 68 14 15 31 5 5 87 2 0 86 1 0 88 13 14 24 15 14 147 1 0 5 0 4 9 1 0 90 3 7 89 chain 16906 chr1 249250621 + 197252398 197252733 L1PB1 5432 - 14 318 135836 14 1 0 13 1 0 45 2 0 15 1 0 4 3 1 16 27 14 14 2 1 45 1 0 15 2 1 42 28 22 9 1 0 13 1 0 20 chain 275948 chr1 249250621 + 197261003 197264196 L1PA5 6144 + 2936 6144 14876 463 8 14 17 0 3 242 1 0 267 2 0 44 0 1 1396 5 3 80 0 8 47 0 2 621 chain 24506 chr1 249250621 + 197272264 197272525 L1PA3long 6157 - 0 261 107514 261 chain 3216 chr1 249250621 + 197293795 197293830 MIR 256 - 183 218 220627 35 chain 29335 chr1 249250621 + 197318948 197319254 AluYb8 318 + 0 306 87372 306 chain 19916 chr1 249250621 + 197322658 197322965 AluSx 319 + 10 308 127410 197 37 31 4 0 1 6 0 5 33 9 0 21 chain 8145 chr1 249250621 + 197324080 197324385 LTR12C 1709 - 641 1033 170263 31 0 200 31 53 58 42 41 0 19 77 0 11 chain 2052 chr1 249250621 + 197324142 197324168 LTR12C 1709 - 1022 1052 206987 1 0 4 25 chain 52129 chr1 249250621 + 197339153 197339841 L1PBa 3878 + 1399 2572 57540 122 1 0 101 25 499 231 1 3 29 0 10 178 chain 14968 chr1 249250621 + 197373439 197373599 AluYa5 310 + 149 309 141422 160 chain 134937 chr1 249250621 + 197374171 197375709 SVA_D 2077 + 0 2066 27024 529 1 0 21 0 40 97 0 40 78 40 0 111 1 490 660 chain 957 chr1 249250621 + 197374897 197374929 SVA_D 2077 + 845 877 177042 32 chain 261049 chr1 249250621 + 197458617 197462436 L1PB2 3958 + 66 3836 15640 18 10 5 15 9 4 18 0 1 11 2 0 14 4 0 23 27 21 32 8 5 49 20 15 62 0 5 214 1 0 135 2 1 31 4 3 73 8 3 34 5 7 158 0 3 222 9 1 130 5 3 52 30 35 178 0 3 36 0 4 316 2 1 316 0 2 111 0 1 30 13 10 10 0 8 20 15 14 67 0 1 35 4 6 72 0 1 157 0 1 52 0 3 133 0 1 251 17 15 37 1 0 9 29 1 4 1 0 63 2 0 13 2 0 82 27 26 58 1 0 64 1 0 53 7 10 9 2 0 22 3 2 59 chain 3676 chr1 249250621 + 197493181 197493224 L1MCc 1008 + 783 826 212283 43 chain 74070 chr1 249250621 + 197500572 197501370 L1HS 6032 - 0 798 46335 798 chain 178410 chr1 249250621 + 197501370 197503273 L1HS 6032 + 3329 5232 21128 1903 chain 8522 chr1 249250621 + 197513701 197513815 MER30 238 - 0 111 168176 40 3 0 71 chain 33157 chr1 249250621 + 197519562 197519932 L1PA4 6152 + 5761 6131 78973 370 chain 38895 chr1 249250621 + 197524118 197524831 L1PA17 2846 + 2015 2692 70874 63 0 9 8 50 43 39 25 21 50 0 1 4 27 1 100 0 1 4 8 7 151 5 0 16 1 0 36 32 31 32 1 0 18 1 0 42 chain 85689 chr1 249250621 + 197534621 197535555 L1PA3long 6157 - 0 934 41273 934 chain 305221 chr1 249250621 + 197541076 197545217 L1PA6 6164 + 0 6159 13204 590 0 4 77 16 17 90 0 1 17 1 18 203 456 2429 134 0 1 396 0 4 132 0 7 936 0 3 173 0 1 4 1 0 83 0 5 41 0 3 610 0 1 174 2 0 5 chain 39814 chr1 249250621 + 197542070 197542526 L1PA6 6164 - 2801 3258 68822 186 0 1 270 chain 5950 chr1 249250621 + 197547909 197547976 L1PA6 6164 + 6095 6162 185675 67 chain 8601 chr1 249250621 + 197553515 197553621 MER3 215 - 77 183 167722 106 chain 457668 chr1 249250621 + 197593710 197598817 L1PA3long 6157 + 1055 6157 8484 528 0 3 682 7 0 637 5 1 271 2 0 109 5 6 1070 0 4 1791 chain 86670 chr1 249250621 + 197618646 197620140 L1PB1 5432 + 4114 5424 40897 439 0 1 18 4 15 32 0 2 84 0 2 7 6 5 14 1 0 77 162 0 88 1 0 85 0 1 117 3 4 12 3 0 17 1 0 13 16 11 11 6 4 39 11 9 16 1 0 42 2 1 16 1 0 5 20 8 16 11 8 13 3 1 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 7566 chr1 249250621 + 197629382 197629466 L1PA7 6471 + 6377 6461 173756 84 chain 7435 chr1 249250621 + 197647887 197647981 L1PA8A 6298 - 177 270 174548 51 1 0 42 chain 307691 chr1 249250621 + 197666757 197670670 L1PA8A 6298 + 2378 6291 13103 11 0 4 107 0 2 462 0 4 124 0 2 272 6 0 24 0 1 7 5 4 12 1 5 27 1 6 417 0 1 8 2 1 39 1 0 11 0 1 40 0 2 250 1 3 161 8 5 124 1 0 13 54 11 15 4 0 245 0 1 25 1 0 47 13 5 219 6 12 183 5 14 42 0 12 128 0 4 77 0 4 145 0 6 78 1 0 490 chain 4485 chr1 249250621 + 197668892 197668942 L1PA8A 6298 + 3520 3570 196851 50 chain 566496 chr1 249250621 + 197676844 197682876 L1HS 6032 + 0 6031 118 3087 1 0 2944 chain 31274 chr1 249250621 + 197721783 197722191 L1PA6 6164 - 8 424 82030 104 9 14 20 1 3 68 7 8 199 chain 25395 chr1 249250621 + 197762839 197763201 L1PA15 4387 - 514 864 102711 32 25 11 12 0 1 160 3 4 130 chain 66120 chr1 249250621 + 197771461 197772268 L1HS 6032 + 1 814 49923 196 0 1 54 5 4 486 1 0 29 12 17 6 0 2 18 chain 141184 chr1 249250621 + 197772268 197773813 L1PA3long 6157 + 4604 6149 25956 1545 chain 37440 chr1 249250621 + 197775086 197775494 L1PA2 6032 - 7 416 72904 16 0 1 392 chain 32749 chr1 249250621 + 197789713 197790241 L1MA3 4352 + 3852 4347 79613 194 0 1 45 35 14 7 3 0 123 3 0 5 0 1 16 1 0 24 13 11 24 1 0 11 1 0 4 6 3 12 chain 6862 chr1 249250621 + 197798149 197798276 L1MC3 1789 + 268 392 178480 37 29 26 61 chain 7945 chr1 249250621 + 197798389 197798776 L1PA7 6471 + 4464 4861 23793 205 0 8 44 0 2 138 chain 493649 chr1 249250621 + 197798885 197804413 L1PA4 6152 + 621 6151 7194 963 0 1 4307 0 1 258 chain 32661 chr1 249250621 + 197804424 197806015 L1PA7 6471 + 4861 6470 23793 212 0 3 272 2 1 275 0 2 13 0 16 273 0 1 40 1 0 489 2 0 12 chain 5194 chr1 249250621 + 197807424 197807490 MER41B 635 + 481 547 193110 66 chain 22285 chr1 249250621 + 197808967 197809330 THE1B 368 + 0 368 118972 105 14 12 60 43 41 23 0 8 61 1 2 56 chain 32212 chr1 249250621 + 197820562 197820952 LTR7Y 441 - 38 397 80501 238 31 0 121 chain 20808 chr1 249250621 + 197823279 197823664 Tigger2a 444 - 1 444 124574 17 63 65 49 16 22 54 5 7 86 2 5 14 0 45 79 chain 9658 chr1 249250621 + 197827680 197827795 L1PA16 3655 + 3358 3473 162312 115 chain 23081 chr1 249250621 + 197840143 197840483 THE1A 353 - 0 353 115235 29 0 14 96 3 0 5 5 7 108 1 0 22 6 8 16 0 1 32 2 0 15 chain 125243 chr1 249250621 + 197840488 197842054 THE1A-int 1579 - 5 1579 29312 320 1 0 47 4 5 293 1 0 108 2 4 265 0 1 161 0 3 102 0 2 107 6 7 149 chain 307686 chr1 249250621 + 197850092 197854109 L1P3 4156 - 19 4156 13104 22 2 1 7 2 0 90 11 12 51 2 1 259 0 1 5 47 1 187 2 0 388 0 1 10 0 4 468 5 2 275 1 2 61 1 150 168 1 4 5 3 0 66 1 4 397 0 3 61 3 0 5 0 8 261 0 2 194 6 7 131 0 6 38 0 1 346 1 3 25 1 0 71 1 0 13 1 0 59 22 21 36 8 7 197 chain 25521 chr1 249250621 + 197914442 197914748 L1PA8A 6298 - 10 316 102138 306 chain 35823 chr1 249250621 + 197957351 197957755 L1PA4 6152 - 9 417 75103 46 0 4 358 chain 27530 chr1 249250621 + 197985146 197985516 L1PA8 5853 - 0 389 94575 93 1 0 19 2 1 34 4 28 70 2 0 44 1 0 100 chain 286094 chr1 249250621 + 198004188 198007899 HERVH-int 3825 + 0 3825 14279 333 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 4 0 5 6 0 6 3 1 14 43 38 14 43 0 13 2 0 14 1 0 14 109 0 68 1 0 447 15 0 455 8 35 299 0 10 112 0 3 504 0 5 421 9 11 39 8 218 260 0 45 96 0 4 82 chain 2859 chr1 249250621 + 198013424 198013459 MER58B 340 + 176 213 227683 17 0 2 18 chain 6700 chr1 249250621 + 198036044 198036118 L1PA2 6032 + 5956 6030 179686 74 chain 136454 chr1 249250621 + 198046284 198047777 L1PA2 6032 - 0 1496 26754 758 0 3 735 chain 15152 chr1 249250621 + 198049937 198050116 THE1B 368 + 190 368 140906 103 1 0 75 chain 3512 chr1 249250621 + 198053630 198053669 5S 121 + 0 39 215175 39 chain 32794 chr1 249250621 + 198074920 198075536 LTR59 565 + 0 565 79544 30 1 0 68 153 99 44 0 8 54 2 1 94 5 0 120 5 7 40 chain 84422 chr1 249250621 + 198098813 198099807 LTR5B 1012 - 0 1012 41749 8 0 2 865 0 14 107 0 2 14 chain 276750 chr1 249250621 + 198106744 198110708 L1PB1 5432 - 2 3975 14831 8 2 0 18 1 0 12 1 0 22 1 0 20 75 58 11 1 0 45 91 138 97 1 0 4 2 3 251 1 0 114 1 5 6 3 0 183 1 0 55 1 0 67 0 1 42 0 1 248 1 0 58 0 1 133 0 4 98 2 0 46 0 4 99 1 0 157 0 2 273 4 0 138 8 4 75 0 3 79 13 4 4 1 0 213 0 5 3 5 0 126 2 0 41 0 3 195 9 10 66 13 12 9 0 6 90 13 15 116 0 3 59 1 2 20 0 2 79 0 1 42 43 5 6 0 1 215 9 23 14 chain 26088 chr1 249250621 + 198179871 198180148 AluYa5 310 - 0 277 99678 277 chain 4483 chr1 249250621 + 198193267 198193402 Tigger3b 1229 + 1 142 200988 20 35 42 41 23 22 16 chain 189011 chr1 249250621 + 198196010 198198116 L1PA4 6152 - 11 2120 20145 825 0 1 453 0 1 624 0 1 204 chain 320308 chr1 249250621 + 198218014 198221560 L1PA3long 6157 - 0 3557 12585 9 8 0 660 0 3 6 0 1 281 0 2 23 0 6 1192 0 1 119 0 4 373 0 1 304 0 1 571 chain 538408 chr1 249250621 + 198278579 198284586 L1PA3long 6157 - 0 6153 3086 95 0 4 802 0 1 175 1 2 224 0 4 64 0 1 496 0 1 2463 0 1 129 0 6 780 1 129 379 1 0 90 1 0 158 0 1 148 chain 16848 chr1 249250621 + 198291851 198292074 MER30 238 - 0 238 135988 110 4 19 109 chain 19932 chr1 249250621 + 198293166 198293375 AluYa5 310 - 12 221 127360 209 chain 23825 chr1 249250621 + 198337647 198337902 L1PA3long 6157 + 5715 5970 111338 255 chain 11981 chr1 249250621 + 198362632 198362776 L1PA7 6471 + 6292 6435 152287 17 1 0 126 chain 51489 chr1 249250621 + 198373797 198374523 LTR12 884 + 0 869 57978 24 1 0 7 4 5 4 1 0 49 25 0 26 0 25 47 0 157 34 2 0 210 6 0 92 11 5 66 6 7 111 chain 18533 chr1 249250621 + 198390945 198391164 L1PA4 6152 - 17 238 131417 130 5 7 84 chain 92609 chr1 249250621 + 198422886 198423934 L1PA4 6152 + 5102 6151 38782 899 0 1 149 chain 15727 chr1 249250621 + 198429478 198429655 L1PA2 6032 - 2 179 139184 177 chain 310713 chr1 249250621 + 198442903 198446778 L1PA7 6471 - 11 3873 12976 182 0 1 190 0 3 81 1 0 4 15 9 174 11 6 186 0 3 258 1 0 60 1 0 1057 9 10 53 7 8 95 1 0 86 0 1 155 1 2 32 0 3 102 0 18 128 0 4 52 2 0 190 1 0 219 37 5 436 6 7 42 chain 4072 chr1 249250621 + 198486065 198486110 MLT2A1 477 - 83 128 206298 45 chain 29285 chr1 249250621 + 198486241 198486651 MLT2A1 477 - 69 477 87637 10 5 0 15 3 0 187 2 1 23 0 4 27 0 1 93 7 8 24 2 3 12 chain 44583 chr1 249250621 + 198515201 198515677 L1PA2 6032 - 0 476 63495 476 chain 21167 chr1 249250621 + 198546269 198546504 L1PA5 6144 - 14 249 123320 235 chain 71099 chr1 249250621 + 198549544 198550798 L1PBa 3878 - 1946 2857 47889 203 349 0 79 0 9 19 3 0 601 chain 71314 chr1 249250621 + 198552763 198553613 SVA_A 1864 - 10 1045 47787 424 0 2 102 0 184 256 1 0 7 2 1 5 0 1 53 chain 19117 chr1 249250621 + 198581174 198581390 L1PA2 6032 - 0 216 129774 216 chain 4573 chr1 249250621 + 198624836 198624975 MER20 218 - 66 200 199961 25 56 50 39 6 7 13 chain 6682 chr1 249250621 + 198640030 198640111 MER2 342 + 134 215 179816 81 chain 31934 chr1 249250621 + 198663039 198663596 MLT2A2 560 - 0 558 80961 40 56 63 42 12 23 181 7 4 5 0 3 19 0 1 18 50 32 127 chain 4433 chr1 249250621 + 198724257 198724325 MLT1H 522 - 397 468 201547 41 6 9 21 chain 99736 chr1 249250621 + 198728795 198730196 L1PA13 3608 - 412 1809 36844 22 5 3 11 1 0 27 2 1 23 21 32 8 0 1 720 16 13 92 6 0 5 5 0 9 0 1 263 1 5 18 3 0 37 0 2 5 2 0 99 chain 12681 chr1 249250621 + 198730196 198730366 L1PA13 3608 + 3191 3357 149230 82 2 0 50 1 0 13 1 0 21 chain 24015 chr1 249250621 + 198752313 198752602 AluSp 311 + 0 305 110242 102 0 16 187 chain 11976 chr1 249250621 + 198770612 198770784 MER30 238 - 3 197 152302 69 0 5 34 10 27 59 chain 68996 chr1 249250621 + 198782652 198783612 MER11A 1151 - 0 1151 48810 59 8 7 26 0 2 48 15 16 100 1 59 84 0 4 41 0 2 3 1 0 9 6 9 137 0 13 227 0 11 66 1 0 30 1 2 42 12 111 43 chain 188234 chr1 249250621 + 198797082 198799902 HUERS-P2-int 2744 - 2 2729 20216 26 3 1 12 2 0 5 2 0 9 2 1 13 7 6 14 3 0 36 5 4 14 1 0 3 1 0 7 1 0 9 2 1 37 5 0 34 2 0 69 0 2 65 1 0 4 4 5 104 20 0 398 1 0 229 4 0 351 8 3 255 0 1 8 1 0 15 3 2 84 1 0 161 6 4 150 0 4 133 1 0 18 1 0 13 7 6 45 22 13 40 90 65 51 0 11 11 54 46 53 1 0 5 2 0 31 1 0 25 4 0 15 chain 3085 chr1 249250621 + 198803500 198803582 MADE1 96 - 0 96 223177 18 26 41 18 2 1 18 chain 77105 chr1 249250621 + 198840489 198841388 L1PA5 6144 - 0 899 44914 6 6 0 140 4 6 697 0 4 46 chain 127134 chr1 249250621 + 198841395 198842820 L1PA5 6144 + 3812 5241 28785 534 0 4 891 chain 29639 chr1 249250621 + 198911009 198911383 L1PA6 6164 + 5789 6162 86099 213 2 0 5 8 10 135 1 0 10 chain 89556 chr1 249250621 + 198930149 198931766 L1PB2 3958 - 184 1469 39792 95 1 0 36 0 1 25 1 0 63 2 1 101 4 0 13 2 0 61 331 15 38 0 1 7 19 16 37 26 26 20 4 0 294 1 0 62 1 0 140 19 19 214 chain 29355 chr1 249250621 + 198965191 198965500 AluYb8 318 - 9 318 87268 309 chain 6828 chr1 249250621 + 198969067 198969144 L1PA2 6032 - 18 95 178735 77 chain 98960 chr1 249250621 + 198992500 198993557 L1HS 6032 - 1139 2196 36900 1057 chain 107778 chr1 249250621 + 198993557 198994708 L1HS 6032 + 4880 6031 34783 1151 chain 119496 chr1 249250621 + 199000069 199001644 THE1A-int 1579 - 0 1579 31219 284 3 2 478 73 0 8 14 88 66 0 2 624 9 11 16 chain 9292 chr1 249250621 + 199027638 199027834 L1PB1 5432 + 5244 5420 164101 37 1 0 6 32 21 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 11 1 0 18 chain 26009 chr1 249250621 + 199043625 199043992 MLT2A1 477 + 0 477 99980 168 5 2 25 0 28 104 5 99 11 11 2 38 chain 335262 chr1 249250621 + 199060761 199065020 HERV9-int 5642 + 791 4780 12017 57 2 0 260 9 2 25 1 0 161 3 4 324 1 0 4 0 1 346 0 1 482 269 0 144 0 1 414 6 7 1005 7 11 682 0 1 57 chain 22050 chr1 249250621 + 199062438 199062700 AluYf4 310 - 14 277 120021 67 0 2 15 1 0 179 chain 3181 chr1 249250621 + 199066666 199066815 LTR12 884 + 115 163 221285 31 101 0 17 chain 33718 chr1 249250621 + 199068315 199068948 MLT2A1 477 + 0 477 78064 168 5 2 9 0 1 23 0 1 177 16 4 9 1 0 6 4 0 9 155 13 45 0 4 6 chain 2043 chr1 249250621 + 199068745 199068768 MLT2A1 477 + 440 463 238247 23 chain 34161 chr1 249250621 + 199074656 199075354 L1PA15 4387 - 35 699 77399 23 5 0 14 3 1 43 7 4 37 29 16 6 4 0 23 1 0 55 1 0 25 6 5 86 1 2 9 17 0 65 12 30 18 2 0 50 10 7 20 2 0 43 43 44 38 chain 3771 chr1 249250621 + 199082447 199082488 MLT1A0 366 - 285 326 210807 41 chain 6633 chr1 249250621 + 199144046 199144262 L1MB8 1703 + 651 868 180212 28 120 121 68 chain 46223 chr1 249250621 + 199178995 199179589 L1PA7 6471 - 10 610 61830 56 3 1 5 0 2 85 3 4 222 1 0 73 0 4 41 7 9 98 chain 251391 chr1 249250621 + 199222497 199226516 L1PB2 3958 - 120 3750 16149 63 2 1 19 16 15 54 6 5 64 1 0 70 3 2 90 1 0 4 18 12 61 9 1 16 0 3 28 40 21 39 0 2 32 1 2 9 0 1 300 1 0 149 1 2 79 2 5 5 3 0 199 46 44 206 0 4 14 0 4 54 7 1 151 24 9 309 6 10 89 1 0 319 7 8 12 3 0 54 6 0 9 1 7 338 1 10 317 3 17 17 360 0 65 4 0 17 0 1 170 5 2 19 chain 24343 chr1 249250621 + 199225881 199226236 THE1B 368 + 0 368 108405 44 6 21 101 7 6 20 3 1 108 0 1 4 15 15 47 chain 4271 chr1 249250621 + 199229134 199229185 MLT1F2 592 + 480 531 203616 51 chain 28800 chr1 249250621 + 199246098 199246472 THE1B 368 + 0 368 89900 169 7 6 26 7 0 101 0 2 64 chain 61297 chr1 249250621 + 199289391 199290257 L1PA13 3608 - 120 980 52209 20 1 0 20 2 0 4 2 0 27 0 1 20 2 0 9 2 1 10 0 1 11 4 2 26 1 0 63 2 0 113 1 0 28 2 0 57 1 7 34 0 1 160 1 2 243 chain 46101 chr1 249250621 + 199307356 199308225 L1PA13 3608 + 139 952 61942 20 5 4 13 7 4 22 30 18 61 16 14 9 0 2 92 117 106 12 3 1 17 1 0 97 2 0 197 8 4 7 20 0 113 chain 30707 chr1 249250621 + 199324751 199325150 L1PA8 5853 + 5461 5853 83021 5 0 1 97 1 0 44 2 0 54 1 0 13 5 4 9 1 0 52 2 1 22 1 0 90 chain 109968 chr1 249250621 + 199332640 199333890 L1PA4 6152 - 2850 4098 34225 137 1 0 852 2 1 258 chain 250927 chr1 249250621 + 199333895 199336722 L1PA4 6152 + 3314 6143 16184 752 0 1 4 1 0 347 0 1 1605 0 1 118 chain 108403 chr1 249250621 + 199387203 199388708 L1PA8 5853 - 0 4065 34590 93 1 0 19 2 1 28 0 2 21 13 11 27 0 1 42 9 7 37 1 0 296 8 6 167 1 2 58 0 2553 13 0 1 68 0 8 113 0 4 87 1 0 170 3 1 68 0 26 10 31 7 118 chain 479447 chr1 249250621 + 199411348 199417597 L1PA8A 6298 - 10 6258 7746 691 0 3 104 2 1 144 1 0 298 10 9 53 1 0 442 15 29 176 0 1 282 0 2 248 0 1 103 1 0 141 3 7 99 0 7 48 1 0 7 3 1 35 6 7 269 4 0 578 0 1 463 0 1 272 1 18 63 6 5 394 16 17 121 13 9 9 1 4 8 6 0 6 4 1 7 0 8 222 1 7 150 0 1 79 0 1 76 7 13 103 7 6 4 1 0 11 1 0 18 2 0 41 0 1 31 6 0 18 1 0 17 1 0 31 13 8 14 1 0 8 1 0 6 1 0 6 4 3 12 10 7 12 2 0 12 1 0 7 1 0 9 15 13 19 7 1 5 2 0 4 1 0 19 4 1 20 32 21 18 chain 78219 chr1 249250621 + 199438738 199439576 L1HS 6032 - 609 1447 44406 838 chain 58258 chr1 249250621 + 199439576 199440199 L1HS 6032 + 5409 6032 53831 623 chain 6484 chr1 249250621 + 199462595 199462686 L1PA8 5853 + 5701 5790 181362 39 2 1 19 1 0 30 chain 10045 chr1 249250621 + 199492603 199492816 L1PB1 5432 - 5 196 160346 5 2 0 18 1 0 9 5 4 21 1 0 13 0 1 10 2 0 15 1 0 4 2 0 19 40 27 45 chain 44997 chr1 249250621 + 199507468 199507981 MER9a2 513 - 0 513 63060 513 chain 40192 chr1 249250621 + 199523232 199523664 L1PA2 6032 + 5595 6027 69040 432 chain 116194 chr1 249250621 + 199523734 199527115 L1MA3 4352 + 419 4021 32374 57 1 3 108 1 0 116 14 12 58 7 5 90 1 0 8 1 0 144 0 1 5 1 0 50 1 0 5 1 0 29 1 0 110 1 6 31 1 2 6 0 1 42 1 0 220 2 1 58 1 0 23 1650 1875 53 0 1 20 3 5 120 2 0 27 23 24 169 2 0 117 chain 14743 chr1 249250621 + 199564650 199564988 L1PB1 5432 + 5105 5419 142127 9 1 0 21 1 0 21 17 11 53 2 1 11 6 5 18 7 14 11 1 0 16 3 0 6 15 6 19 24 19 24 1 0 21 1 0 13 1 0 15 chain 289273 chr1 249250621 + 199568702 199572434 L1P3 4156 + 400 4095 14068 17 5 9 230 1 0 19 22 23 499 6 5 67 0 1 328 0 3 50 1 0 39 7 12 47 0 1 388 0 1 328 57 25 116 0 1 20 0 1 52 0 7 91 1 3 71 35 0 141 7 5 97 0 4 263 0 1 180 3 7 8 1 0 146 0 1 123 1 0 265 chain 258277 chr1 249250621 + 199573925 199576928 L1PA3long 6157 + 3118 6142 15793 206 6 8 309 0 1 416 0 1 393 0 1 86 0 2 194 0 1 589 0 1 4 0 1 59 1 0 599 0 12 141 chain 39309 chr1 249250621 + 199595424 199595871 L1PA7 6471 + 6012 6459 70307 447 chain 520607 chr1 249250621 + 199601678 199608132 L1PA7 6471 + 3 6470 5096 313 12 13 62 1 0 20 0 1 80 0 3 848 0 1 4 1 0 411 1 0 314 0 1 359 0 1 201 1 2 64 1 0 101 0 6 79 3 7 129 7 8 466 1 0 31 0 1 180 0 1 291 6 0 223 0 1 361 1 0 406 0 1 9 12 13 126 12 0 472 2 1 10 0 4 72 0 2 524 0 4 5 0 2 211 1 2 20 chain 528144 chr1 249250621 + 199616490 199622599 L1PA5 6144 + 4 6144 4386 131 7 33 868 0 2 131 9 0 275 0 4 367 0 1 63 0 1 433 4 3 5 1 0 848 0 1 332 1 0 126 0 1 928 0 7 63 0 1 666 2 1 849 chain 4891 chr1 249250621 + 199622656 199622716 MER67D 511 - 451 511 196368 60 chain 11321 chr1 249250621 + 199630874 199631113 MER58B 340 - 10 281 154998 75 53 70 46 18 33 47 chain 4020 chr1 249250621 + 199669670 199669842 L1MC3 1789 + 98 281 207077 34 111 122 27 chain 16345 chr1 249250621 + 199676181 199676361 L1PA2 6032 + 5850 6030 137355 180 chain 104496 chr1 249250621 + 199681745 199683262 L1PA13 3608 + 2058 3547 35621 23 25 26 33 2 0 8 0 2 148 0 3 531 0 7 94 0 2 37 3 5 152 1 0 31 1 0 113 2 0 62 1 0 21 2 0 35 1 0 4 3 1 47 2 0 5 2 0 20 1 0 24 30 12 14 14 7 11 3 0 11 chain 180252 chr1 249250621 + 199700331 199702348 L1PA5 6144 + 4129 6143 20968 1756 3 0 103 1 8 6 7 0 141 chain 28068 chr1 249250621 + 199750778 199751235 L1PB3 3668 + 3164 3595 92759 5 1 0 105 0 1 16 1 0 187 20 4 18 12 10 18 3 1 33 11 7 13 1 0 13 chain 6961 chr1 249250621 + 199762964 199763052 Charlie1 1172 - 454 542 177740 88 chain 9210 chr1 249250621 + 199783855 199784058 MSTA 426 + 0 223 164501 66 22 21 21 22 50 14 2 0 33 4 0 8 1 0 10 chain 3117 chr1 249250621 + 199792743 199792784 MADE1 96 - 38 96 222603 13 0 17 28 chain 23108 chr1 249250621 + 199796238 199796513 AluSp 311 - 14 289 115101 275 chain 17511 chr1 249250621 + 199812219 199812469 L1MA2 4263 + 3873 4114 134235 81 1 0 10 2 1 93 7 0 11 1 2 33 1 0 10 chain 23114 chr1 249250621 + 199841119 199841403 AluSp 311 + 11 295 115072 284 chain 536982 chr1 249250621 + 199850093 199856212 L1PA4 6152 - 11 6142 3313 482 0 1 228 0 1 135 1 0 12 0 4 1390 0 2 108 0 1 8 0 1 591 1 0 662 1 0 634 0 1 604 0 2 483 0 1 58 1 2 720 chain 136948 chr1 249250621 + 199872984 199874527 SVA_D 2077 - 9 2076 26651 395 0 2 217 0 1 8 0 1 37 2 491 151 0 40 689 3 1 16 9 2 16 chain 11184 chr1 249250621 + 199877806 199877949 MER21B 843 + 325 476 155497 114 0 8 29 chain 113585 chr1 249250621 + 199891846 199894428 L1PREC2 3366 + 1114 2693 33204 21 6 1 81 0 1 29 1 2 27 16 17 17 1 0 271 2 0 171 682 19 78 6 7 93 0 2 40 1 2 213 15 7 129 0 1 4 2 1 36 331 0 309 chain 42709 chr1 249250621 + 199899236 199899716 L1PA5 6144 + 5659 6139 65764 480 chain 2943 chr1 249250621 + 199903033 199903143 L1ME1 1623 + 1380 1485 226248 23 1 0 4 0 1 10 56 51 16 chain 94396 chr1 249250621 + 199928620 199929848 LTR12C 1709 + 2 1702 38235 276 3 16 44 3 46 80 3 0 5 4 5 176 0 278 143 0 47 100 19 12 210 0 101 80 5 4 77 chain 22986 chr1 249250621 + 199934139 199934435 AluSp 311 - 10 305 115687 181 3 0 39 1 3 72 chain 9420 chr1 249250621 + 199953926 199954033 MER4E1 777 + 663 770 163463 107 chain 14695 chr1 249250621 + 199954262 199954452 MER30 238 - 0 207 142281 79 0 6 31 5 0 7 0 16 68 chain 24889 chr1 249250621 + 199962502 199962788 AluSc5 308 - 23 308 105416 30 1 0 255 chain 7819 chr1 249250621 + 199983817 199983911 U6 107 - 1 95 172189 94 chain 28919 chr1 249250621 + 200102924 200103386 Tigger3b 1229 + 352 826 89379 27 0 1 19 0 3 97 14 12 35 1 0 18 10 16 43 7 13 32 0 2 13 0 1 11 7 6 69 3 0 56 chain 553359 chr1 249250621 + 200154495 200160637 L1PA4 6152 + 2 6143 1024 3123 0 1 197 1 0 366 1 0 1605 1 0 707 1 2 140 chain 2657 chr1 249250621 + 200257888 200257959 MER20B 722 - 653 720 230930 18 11 9 20 9 7 13 chain 27356 chr1 249250621 + 200263930 200264356 L1PA16 3655 + 3153 3589 95095 51 9 8 79 35 44 39 0 3 39 3 5 157 3 0 11 chain 19017 chr1 249250621 + 200319707 200319927 AluSx4 309 + 82 302 130073 220 chain 5060 chr1 249250621 + 200335725 200335785 HY3 101 - 31 91 194530 60 chain 20788 chr1 249250621 + 200391034 200391262 L1PA3long 6157 - 0 228 124656 228 chain 26447 chr1 249250621 + 200420750 200421076 L1PA6 6164 - 2 329 98245 168 1 2 157 chain 13892 chr1 249250621 + 200439219 200439443 L1MA5A 2387 + 2121 2306 144949 38 2 0 22 5 0 38 3 0 13 28 0 63 1 0 11 chain 23249 chr1 249250621 + 200442214 200442505 AluSc 308 + 9 301 114445 248 1 0 15 0 2 27 chain 22873 chr1 249250621 + 200470699 200470978 AluSq2 311 + 8 293 116219 209 0 7 60 1 0 9 chain 20823 chr1 249250621 + 200476734 200476972 AluSp 311 - 59 297 124530 238 chain 23752 chr1 249250621 + 200517440 200517727 AluSp 311 - 12 299 111760 287 chain 15464 chr1 249250621 + 200542555 200542728 AluYk11 308 - 3 173 140007 92 3 0 78 chain 8496 chr1 249250621 + 200555771 200555895 L1PB3 3668 + 3352 3475 168313 36 15 14 73 chain 4564 chr1 249250621 + 200556219 200556271 MER1B 344 - 101 153 200061 52 chain 13734 chr1 249250621 + 200561896 200562096 Tigger3a 397 - 83 343 145491 154 25 85 21 chain 3393 chr1 249250621 + 200660802 200660991 L1MC5 759 + 207 399 217223 25 27 28 11 24 25 21 63 64 18 chain 23795 chr1 249250621 + 200681431 200681708 AluSc 308 - 22 299 111501 277 chain 18914 chr1 249250621 + 200702364 200702591 L1PA5 6144 - 0 228 130328 111 0 1 116 chain 5407 chr1 249250621 + 200759148 200759227 L1MCa 1829 - 1308 1378 190915 11 9 0 59 chain 387773 chr1 249250621 + 200765801 200770750 L1PA2 6032 - 3 4697 10529 338 0 1 1171 0 5 1118 7 4 337 1 0 216 6 7 31 0 4 349 5 9 236 6 5 118 0 2 258 1 0 102 307 0 104 0 40 95 13 14 130 chain 24805 chr1 249250621 + 200798011 200798304 AluSp 311 + 8 305 105862 55 0 2 208 0 2 30 chain 37284 chr1 249250621 + 200806583 200807101 L1PA13 3608 - 120 625 73106 22 1 0 14 13 9 47 8 5 56 1 0 61 2 0 114 1 0 32 8 7 138 chain 14568 chr1 249250621 + 200808662 200808967 L1PB1 5432 + 5145 5423 142682 13 8 4 6 2 0 52 2 1 15 1 0 45 1 0 15 27 15 11 7 5 5 1 0 14 2 0 24 1 0 4 4 6 12 1 0 12 1 0 19 chain 5257 chr1 249250621 + 200858344 200858423 MLT2D 439 + 0 80 192435 37 5 6 37 chain 14207 chr1 249250621 + 200900634 200900848 THE1C 375 - 118 368 143858 72 9 10 66 14 49 53 chain 16820 chr1 249250621 + 200923272 200923489 MER30 238 - 0 232 136064 114 5 20 98 chain 23278 chr1 249250621 + 200946863 200947150 AluSp 311 - 14 300 114305 15 6 5 266 chain 26088 chr1 249250621 + 200969959 200970255 AluSp 311 + 6 302 99673 296 chain 7983 chr1 249250621 + 201073515 201073670 LTR37B 484 + 113 320 171153 18 21 72 21 9 10 86 chain 23248 chr1 249250621 + 201134571 201134853 AluSc5 308 - 17 299 114452 282 chain 189202 chr1 249250621 + 201200248 201202431 L1PA6 6164 + 3995 6162 20125 281 0 3 410 4 7 872 22 0 594 chain 560329 chr1 249250621 + 201203236 201209381 L1PA3long 6157 - 0 6151 334 907 1 2 68 0 1 3087 0 1 277 0 3 1805 chain 3979 chr1 249250621 + 201323653 201323745 MIRb 242 + 34 124 207695 33 32 30 27 chain 2720 chr1 249250621 + 201396113 201396142 MIR 256 + 118 147 229892 29 chain 11365 chr1 249250621 + 201414557 201414692 MSTA 426 + 28 163 154835 135 chain 21519 chr1 249250621 + 201450537 201450833 AluSp 311 + 0 290 122073 80 14 10 35 2 0 7 1 0 42 1 2 114 chain 44236 chr1 249250621 + 201482365 201482908 MER41A 554 - 0 554 63903 11 0 4 224 0 1 81 0 6 227 chain 5860 chr1 249250621 + 201489071 201489143 MER84 505 - 48 119 186590 44 1 0 27 chain 17865 chr1 249250621 + 201551023 201551226 AluY 311 + 81 285 133202 51 0 1 152 chain 6188 chr1 249250621 + 201563222 201563292 LTR12F 595 - 123 193 183673 70 chain 47352 chr1 249250621 + 201614167 201614689 L1PA4 6152 + 5629 6151 60938 522 chain 182446 chr1 249250621 + 201668151 201670548 L1PA6 6164 + 4086 6162 20745 1207 0 4 13 1 2 21 0 1 86 1 0 182 0 2 194 327 0 206 1 0 158 chain 6475 chr1 249250621 + 201702533 201702620 U6 107 + 0 94 181426 58 1 8 28 chain 14707 chr1 249250621 + 201784537 201784842 L1MA8 2339 + 1962 2226 142252 47 1 0 66 27 25 19 33 0 38 2 3 28 16 10 28 chain 24403 chr1 249250621 + 201842596 201842896 AluSp 311 + 3 297 108059 278 4 1 10 3 0 5 chain 22884 chr1 249250621 + 201870352 201870639 AluSp 311 + 2 291 116168 107 4 5 6 0 1 170 chain 5780 chr1 249250621 + 201887094 201887220 MER45A 178 + 57 177 187356 10 16 0 35 20 30 45 chain 5216 chr1 249250621 + 201902156 201902217 L1ME3A 1206 + 950 1011 192866 61 chain 3943 chr1 249250621 + 201922353 201922397 MLT2B2 565 + 516 560 208230 44 chain 25004 chr1 249250621 + 201925807 201926103 AluSg 306 + 0 300 104757 50 0 4 246 chain 3468 chr1 249250621 + 201964966 201965005 MIRc 230 - 99 138 215836 39 chain 26767 chr1 249250621 + 201971279 201971576 AluSp 311 - 0 298 97099 178 0 1 119 chain 13257 chr1 249250621 + 202002658 202002818 L1PA6 6164 + 6006 6162 147258 150 4 0 6 chain 3963 chr1 249250621 + 202007973 202008020 L1MB3 1562 + 1374 1421 207931 47 chain 5763 chr1 249250621 + 202029982 202030218 MLT1F 544 - 170 413 187509 50 152 159 34 chain 25200 chr1 249250621 + 202033923 202034224 AluSp 311 + 0 304 103741 84 7 10 210 chain 5998 chr1 249250621 + 202039989 202040061 HY3 101 + 17 92 185256 52 0 3 20 chain 4099 chr1 249250621 + 202065528 202065578 Charlie1a 1436 + 1324 1374 205977 50 chain 10022 chr1 249250621 + 202068474 202068610 MER2 342 - 121 259 160470 110 7 9 19 chain 22347 chr1 249250621 + 202106488 202106773 AluSp 311 + 6 299 118712 13 9 18 176 1 0 86 chain 6304 chr1 249250621 + 202118653 202118769 FLAM_C 140 + 11 130 182763 30 19 23 47 2 1 18 chain 4955 chr1 249250621 + 202136812 202136868 LTR2C 499 + 443 499 195644 56 chain 5086 chr1 249250621 + 202137570 202137626 LTR2C 499 + 443 499 194219 56 chain 7225 chr1 249250621 + 202150334 202150436 MER33 330 - 181 281 175916 24 2 0 76 chain 144448 chr1 249250621 + 202159959 202161610 SVA_D 2077 - 8 2022 25405 510 0 224 212 1 55 30 0 2 45 0 83 120 40 0 54 0 40 639 chain 16188 chr1 249250621 + 202193618 202193944 MER1B 344 - 5 344 137792 45 2 0 18 8 9 47 4 0 80 12 9 29 65 86 16 chain 2920 chr1 249250621 + 202195472 202195503 U7 62 + 1 32 226671 31 chain 28209 chr1 249250621 + 202208003 202208406 MER48 407 - 0 407 92269 61 1 14 41 18 0 188 5 14 89 chain 3076 chr1 249250621 + 202213389 202213424 MER5A 189 + 128 163 223392 35 chain 29572 chr1 249250621 + 202222923 202223232 AluYa5 310 - 1 310 86316 309 chain 134319 chr1 249250621 + 202230228 202231720 L1PA3long 6157 - 15 1503 27147 1210 5 1 277 chain 24400 chr1 249250621 + 202306079 202306368 AluSg7 307 - 17 307 108074 157 1 2 131 chain 7553 chr1 249250621 + 202308777 202308876 MER2 342 + 110 215 173842 58 0 6 41 chain 8337 chr1 249250621 + 202326269 202326371 MLT1D 503 + 401 503 169190 102 chain 11602 chr1 249250621 + 202345989 202346213 MER30 238 + 0 238 153881 15 19 18 74 3 0 11 6 21 10 5 5 30 6 9 45 chain 28277 chr1 249250621 + 202346960 202347265 AluYf4 310 - 3 310 92011 99 0 2 206 chain 46589 chr1 249250621 + 202351023 202351558 L1PA5 6144 + 5606 6141 61539 535 chain 123725 chr1 249250621 + 202420320 202421730 SVA_D 2077 - 21 2077 29803 596 5 6 9 0 1 34 5 494 260 0 156 437 4 6 26 1 0 7 2 0 24 chain 110674 chr1 249250621 + 202436358 202437582 L1PA4 6152 - 0 1230 34038 6 0 5 322 1 2 895 chain 2422 chr1 249250621 + 202441383 202441429 L1ME4a 557 - 156 201 234035 12 5 4 29 chain 14551 chr1 249250621 + 202452624 202452849 LTR10A 586 - 275 586 142726 35 0 68 12 10 0 12 16 43 67 0 1 73 chain 14697 chr1 249250621 + 202469016 202469241 L1MA5 2750 + 2204 2429 142275 33 2 0 7 5 7 73 8 7 55 0 1 42 chain 3303 chr1 249250621 + 202469294 202469331 tRNA-Glu-GAG 37 + 0 37 218928 37 chain 23026 chr1 249250621 + 202483512 202483915 L1PA14 3548 - 94 481 115508 37 27 24 16 4 2 34 4 0 9 1 0 22 0 1 18 4 5 58 8 7 84 1 0 6 2 0 17 9 5 42 chain 23868 chr1 249250621 + 202493511 202493995 L1PB1 5432 - 5 451 111094 5 1 0 4 1 0 11 4 3 12 1 0 15 0 1 6 1 0 22 2 0 16 1 0 5 3 1 13 21 11 6 2 0 16 1 0 6 14 16 21 1 0 16 2 1 52 2 0 6 10 6 12 1 0 6 1 0 24 9 0 9 1 2 122 chain 25285 chr1 249250621 + 202506194 202506501 AluY 311 + 0 302 103287 129 5 0 173 chain 42504 chr1 249250621 + 202529377 202529911 MER41A 554 - 2 554 66008 80 1 6 66 0 12 190 0 1 197 chain 9467 chr1 249250621 + 202530041 202530150 L1PA3long 6157 + 6048 6157 163245 109 chain 7979 chr1 249250621 + 202561965 202562127 MER53 195 - 28 195 171175 46 0 4 9 32 40 9 7 0 59 chain 127762 chr1 249250621 + 202578015 202579466 L1PA4 6152 - 9 1452 28629 385 1 0 86 17 4 117 0 2 241 0 4 604 chain 64872 chr1 249250621 + 202579466 202580167 L1PA4 6152 + 4004 4705 50501 701 chain 6851 chr1 249250621 + 202581263 202581485 L1MB7 1623 - 969 1156 178571 22 57 55 28 0 9 11 55 13 49 chain 85586 chr1 249250621 + 202708615 202709583 SVA_D 2077 - 12 1079 41311 621 0 97 116 2 1 5 0 1 169 1 2 5 1 0 10 0 2 38 chain 13579 chr1 249250621 + 202709600 202709743 SVA_F 1814 - 698 841 146060 143 chain 3226 chr1 249250621 + 202756618 202756661 Charlie1a 1436 - 243 289 220500 11 0 3 32 chain 13597 chr1 249250621 + 202763855 202764438 MER44A 345 - 2 282 145987 8 2 0 8 4 5 39 16 12 24 1 0 63 1 21 8 0 1 24 341 23 44 chain 24154 chr1 249250621 + 202768501 202768798 AluSp 311 + 2 295 109458 240 5 1 52 chain 13248 chr1 249250621 + 202773061 202773209 L1PA5 6144 + 5984 6132 147292 148 chain 13112 chr1 249250621 + 202799395 202799677 AluSp 311 - 10 311 147798 132 115 0 15 0 134 20 chain 22551 chr1 249250621 + 202813751 202814030 AluSp 311 - 21 301 117799 148 5 6 126 chain 25538 chr1 249250621 + 202829496 202829811 AluSp 311 - 6 311 102062 20 11 0 177 0 1 107 chain 31655 chr1 249250621 + 202834082 202834515 MER4A 717 - 26 453 81396 36 18 13 235 17 18 12 2 0 113 chain 5844 chr1 249250621 + 202838983 202839060 LOR1-int 1871 - 690 766 186740 54 1 0 22 chain 11817 chr1 249250621 + 202856375 202856584 MER30 238 + 0 238 152956 22 15 22 54 3 1 12 4 17 25 1 7 12 0 2 22 0 3 39 chain 26483 chr1 249250621 + 202897125 202897431 AluY 311 + 0 311 98102 80 0 5 226 chain 210807 chr1 249250621 + 202900058 202904299 L1MA2 4263 - 216 3623 18446 81 1 0 8 1 0 34 973 340 225 53 1 189 0 2 22 1 0 213 29 33 28 0 3 152 273 7 30 0 5 23 2 0 9 2 1 81 0 4 108 1 2 80 7 8 31 1 16 146 0 8 65 5 6 113 63 9 184 0 1 4 1 0 151 4 141 610 8 1 213 0 3 16 chain 83306 chr1 249250621 + 202905413 202906320 L1PA4 6152 - 1 908 42199 907 chain 53292 chr1 249250621 + 202946516 202947545 MER4A 717 - 0 706 56832 107 0 1 324 0 3 14 0 5 137 11 3 33 320 0 20 5 1 58 chain 81862 chr1 249250621 + 202950325 202951412 Tigger1 2417 - 927 2020 42817 12 1 0 4 0 1 50 9 5 126 3 1 117 0 1 264 5 12 60 3 4 137 0 3 296 chain 33443 chr1 249250621 + 202974569 202975004 LTR7 482 - 0 482 78500 49 12 14 158 9 50 45 0 1 68 0 3 94 chain 25905 chr1 249250621 + 202975267 202975723 LTR21A 479 + 0 479 100412 41 62 41 36 0 14 125 0 3 48 9 37 80 9 11 14 8 5 24 chain 8994 chr1 249250621 + 202988240 202988392 Tigger4a 237 + 69 233 165641 34 0 7 12 16 9 12 0 4 32 3 11 43 chain 22354 chr1 249250621 + 203160439 203160915 MER31A 484 + 0 484 118686 96 1 0 33 56 57 81 0 3 16 39 44 65 55 56 19 1 0 14 chain 6821 chr1 249250621 + 203162411 203162498 MER33 330 + 139 226 178785 87 chain 3217 chr1 249250621 + 203165122 203165158 L1MA4 2864 - 62 98 220617 36 chain 85670 chr1 249250621 + 203203665 203204688 MER11B 1079 + 0 1042 41285 316 1 18 203 0 1 4 6 5 223 1 3 269 chain 10495 chr1 249250621 + 203209833 203209953 L1PA2 6032 + 5911 6031 158268 120 chain 25320 chr1 249250621 + 203211307 203211709 L1PA11 4918 - 351 735 103121 13 1 0 15 41 31 20 1 0 16 2 0 65 2 0 7 1 0 6 2 1 62 2 0 5 2 0 95 0 4 44 chain 427717 chr1 249250621 + 203225617 203232118 L1P2 5180 + 2 5035 9356 60 1 2 86 2 1 43 1 0 53 1 0 214 1 0 54 1 0 272 1 0 6 1 0 144 0 3 463 1483 2 802 1 15 96 3 1 870 1 0 1159 6 10 630 0 1 46 chain 133269 chr1 249250621 + 203227030 203228504 L1PA3long 6157 - 0 1479 27380 331 0 3 438 0 2 705 chain 59069 chr1 249250621 + 203235258 203235956 SVA_B 1603 - 0 703 53352 7 2 0 429 0 3 174 0 3 38 0 1 13 0 1 7 12 11 16 chain 93439 chr1 249250621 + 203283001 203284064 L1PA6 6164 + 5088 6162 38522 224 0 8 167 0 3 672 chain 8578 chr1 249250621 + 203288123 203288226 U6 107 - 0 106 167856 62 0 3 41 chain 25351 chr1 249250621 + 203298460 203298766 AluY 311 + 1 309 102945 42 0 1 88 6 7 170 chain 82810 chr1 249250621 + 203343804 203344992 Tigger1 2417 - 13 1235 42413 29 27 29 19 0 1 5 1 0 20 0 5 10 5 0 35 1 0 37 0 1 68 0 1 197 13 16 139 0 15 34 18 14 128 4 18 200 0 3 122 1 0 4 0 1 71 chain 45099 chr1 249250621 + 203358502 203359059 L1PA8 5853 - 0 553 62936 15 2 3 75 1 0 67 1 0 14 2 1 70 2 0 44 1 0 48 0 1 215 chain 128157 chr1 249250621 + 203361671 203363083 L1PA3long 6157 + 4735 6147 28535 1412 chain 525621 chr1 249250621 + 203380633 203387243 L1PA5 6144 + 0 6130 4617 121 0 14 24 13 25 647 0 1 196 1 2 4 1 0 27 0 1 87 0 3 17 9 0 537 0 10 47 0 4 187 0 1 358 2 1 677 518 0 1366 0 3 934 1 0 836 chain 43972 chr1 249250621 + 203383593 203384101 MER9a2 513 + 0 508 64233 508 chain 23820 chr1 249250621 + 203392846 203393136 AluSp 311 + 10 302 111359 23 4 6 263 chain 7699 chr1 249250621 + 203396440 203396554 HERVK22-int 3844 - 0 113 172943 88 9 8 17 chain 59892 chr1 249250621 + 203405097 203405787 L1PA5 6144 + 4453 5143 52877 528 0 1 129 2 1 31 chain 58213 chr1 249250621 + 203405787 203406448 L1PA5 6144 + 5149 5810 53857 661 chain 27611 chr1 249250621 + 203406448 203406781 L1PA5 6144 + 5811 6144 94321 333 chain 7584 chr1 249250621 + 203415616 203415743 MLT1A 405 + 233 361 173641 48 18 19 15 0 1 21 1 0 24 chain 8726 chr1 249250621 + 203430107 203430505 L1MA8 2339 + 1824 2189 167055 16 11 7 24 5 7 13 166 162 40 50 26 46 3 0 24 chain 3312 chr1 249250621 + 203435808 203435917 MIR 256 + 118 232 218733 23 3 0 8 16 17 20 24 31 15 chain 17423 chr1 249250621 + 203440020 203440244 AluY 311 + 82 307 134452 41 1 0 9 0 1 50 5 6 118 chain 28864 chr1 249250621 + 203460107 203460504 LTR7 482 + 0 470 89603 50 26 64 110 0 1 40 0 31 9 0 1 80 0 2 82 chain 22392 chr1 249250621 + 203500608 203500894 AluSx4 309 - 9 299 118527 208 5 8 27 1 2 45 chain 5245 chr1 249250621 + 203520305 203520377 MER4D 903 - 26 97 192573 5 1 0 25 0 1 22 1 0 18 chain 21562 chr1 249250621 + 203531586 203531950 THE1D 372 - 15 370 121916 133 60 58 111 9 0 40 1 3 10 chain 23694 chr1 249250621 + 203565467 203565775 AluSp 311 + 1 303 112060 131 25 19 152 chain 13639 chr1 249250621 + 203580411 203580951 MLT2A1 477 - 8 295 80943 35 304 49 180 0 2 21 chain 46457 chr1 249250621 + 203580970 203581484 L1PA4 6152 - 0 514 61634 514 chain 4622 chr1 249250621 + 203581493 203581676 MLT2A1 477 - 295 477 80943 12 4 1 66 0 1 95 0 1 6 chain 20149 chr1 249250621 + 203602954 203603186 AluSp 311 + 58 290 126679 232 chain 56826 chr1 249250621 + 203623412 203624458 Tigger1 2417 + 1248 1998 54641 37 0 17 242 0 1 40 320 2 10 0 1 287 0 3 110 chain 8051 chr1 249250621 + 203713846 203713954 FLAM_A 137 + 20 120 170750 23 8 0 77 chain 11125 chr1 249250621 + 203725761 203725905 MER41B 635 - 467 611 155713 41 0 1 33 1 0 69 chain 39323 chr1 249250621 + 203727953 203728787 MER41A 554 + 0 530 70295 314 0 1 111 1 2 12 0 17 25 323 0 48 chain 44082 chr1 249250621 + 203731273 203731826 MER41A 554 + 0 554 64122 285 5 6 263 chain 2780 chr1 249250621 + 203749226 203749257 MER45B 1037 + 782 813 229020 31 chain 26858 chr1 249250621 + 203749658 203749975 AluY 311 + 0 311 96776 126 5 0 105 1 0 80 chain 4236 chr1 249250621 + 203756942 203757030 MER6A 605 - 150 226 204086 26 6 8 9 14 0 33 chain 31639 chr1 249250621 + 203757154 203757930 MLT2A1 477 - 0 477 81422 37 21 55 180 0 1 24 0 1 9 4 1 49 1 0 8 333 2 110 chain 24333 chr1 249250621 + 203763838 203764139 AluSc 308 - 1 300 108460 5 2 0 294 chain 128094 chr1 249250621 + 203810285 203811726 SVA_B 1603 - 2 1552 28546 55 0 1 582 0 120 443 0 1 329 14 1 18 chain 15753 chr1 249250621 + 203860812 203861009 AluSp 311 + 103 299 139100 178 2 1 17 chain 8846 chr1 249250621 + 203865852 203865948 L1PA3long 6157 + 6061 6157 166398 96 chain 20482 chr1 249250621 + 203866748 203867017 AluYc 301 + 16 289 125676 104 22 24 114 0 2 29 chain 8452 chr1 249250621 + 203868652 203868761 LTR37B 484 + 216 325 168556 109 chain 18448 chr1 249250621 + 203869833 203870071 LTR12C 1709 + 928 1215 131650 66 1 3 74 0 47 97 chain 140900 chr1 249250621 + 203887687 203889599 SVA_D 2077 - 0 1820 26010 11 7 0 585 0 98 163 1 0 135 181 5 25 19 21 86 88 4 26 2 0 17 2 0 137 0 40 101 0 40 326 chain 9635 chr1 249250621 + 203888589 203888769 SVA_D 2077 - 689 820 80583 58 49 0 73 chain 2512 chr1 249250621 + 203888647 203888674 SVA_D 2077 - 1101 1128 171595 27 chain 2409 chr1 249250621 + 203888900 203888945 SVA_D 2077 - 902 947 80583 45 chain 9951 chr1 249250621 + 203895815 203896281 Tigger3b 1229 - 379 517 160833 44 327 0 29 1 0 65 chain 4748 chr1 249250621 + 203900298 203900475 L1MA7 2200 + 1918 2081 197936 31 1 0 24 100 87 21 chain 21405 chr1 249250621 + 203900491 203900774 AluSq2 311 + 6 290 122490 33 11 12 82 0 1 127 1 0 29 chain 8079 chr1 249250621 + 203909836 203910083 Arthur1C 363 - 50 351 170595 17 6 0 3 8 0 9 26 41 85 71 124 22 chain 30119 chr1 249250621 + 203924045 203924602 LTR4 552 - 0 537 84426 12 10 9 31 0 1 9 8 10 75 18 12 12 1 2 100 1 0 89 16 13 12 0 3 56 42 38 26 0 1 5 0 1 13 14 0 7 chain 147491 chr1 249250621 + 203933016 203935164 MER57-int 2662 - 548 2620 24962 134 13 10 61 3 0 240 0 4 13 0 1 247 2 0 33 0 2 299 1 0 103 155 0 24 1 0 29 11 12 138 0 98 34 0 3 179 3 4 133 2 0 205 1 0 9 47 29 28 chain 32018 chr1 249250621 + 203940143 203940570 MER57A1 433 - 0 433 80835 103 9 11 35 0 2 265 0 2 15 chain 12773 chr1 249250621 + 203954796 203955064 MSTD 398 - 20 307 149161 50 9 10 82 56 54 19 11 31 41 chain 7042 chr1 249250621 + 203968371 203968473 MER5A1 166 + 29 143 177171 49 5 17 48 chain 8169 chr1 249250621 + 203986372 203986510 LTR29 598 - 419 544 170123 70 19 4 10 7 9 32 chain 7475 chr1 249250621 + 203987792 203987934 MSTB 430 + 32 174 174302 84 43 43 15 chain 5822 chr1 249250621 + 204012658 204012726 MLT1A 405 - 283 351 186920 68 chain 24113 chr1 249250621 + 204019370 204019642 L1PA4 6152 - 0 271 109680 260 1 0 11 chain 25701 chr1 249250621 + 204021305 204021610 AluSp 311 + 0 301 101284 57 4 0 244 chain 4683 chr1 249250621 + 204021639 204021716 Ricksha_c 1012 + 95 168 198728 32 1 2 16 1 0 6 4 0 17 chain 4976 chr1 249250621 + 204021748 204021809 MER6 865 - 173 234 195404 61 chain 10628 chr1 249250621 + 204026298 204026547 MLT1F1 559 - 8 285 157699 47 21 20 73 79 108 29 chain 6069 chr1 249250621 + 204078822 204078926 MER2 342 - 27 132 184658 14 22 23 68 chain 15390 chr1 249250621 + 204108812 204109037 Tigger3a 397 - 23 258 140234 21 27 37 177 chain 28828 chr1 249250621 + 204140326 204140633 AluYb8 318 - 11 318 89774 307 chain 9877 chr1 249250621 + 204145138 204145265 LTR15 485 + 353 478 161183 84 1 0 5 2 0 14 0 1 21 chain 27891 chr1 249250621 + 204151157 204151450 AluYa5 310 - 17 310 93394 293 chain 47308 chr1 249250621 + 204176968 204177968 L1PB1 5432 + 4649 5422 60963 54 0 2 99 12 9 262 245 45 10 5 4 10 1 0 13 6 2 9 2 0 52 2 1 14 2 1 45 1 0 15 26 15 15 12 9 11 2 0 24 1 0 6 0 1 15 1 0 11 0 2 17 chain 22691 chr1 249250621 + 204178925 204179215 AluSq2 311 + 25 311 117121 34 3 0 83 3 4 143 2 0 22 chain 29666 chr1 249250621 + 204203700 204204076 MLT2A1 477 + 0 382 85977 140 0 1 27 1 5 99 6 7 103 chain 474789 chr1 249250621 + 204204250 204209870 HERVL-int 5654 + 36 5654 7887 177 7 6 24 0 4 76 0 2 274 30 0 50 1 0 293 0 5 218 0 1 1295 1 0 501 0 2 48 0 1 1076 0 12 387 0 1 19 3 1 386 0 3 306 0 1 229 0 1 219 chain 32598 chr1 249250621 + 204209870 204210294 MLT2A1 477 + 0 470 79851 99 0 12 29 0 1 27 1 5 212 8 38 7 1 0 40 chain 10492 chr1 249250621 + 204240198 204240365 MER30 238 + 37 237 158278 31 0 8 22 0 2 9 22 48 34 3 0 46 chain 24128 chr1 249250621 + 204280343 204280632 AluSp 311 + 6 295 109594 289 chain 5298 chr1 249250621 + 204304087 204304175 L1MA7 2200 - 112 189 192028 38 12 1 38 chain 42118 chr1 249250621 + 204315819 204316901 MER11B 1079 - 550 1079 66484 52 555 0 163 0 4 51 4 1 8 0 1 249 chain 3729 chr1 249250621 + 204361676 204361728 MER20 218 - 144 196 211485 39 1 0 6 0 1 6 chain 26443 chr1 249250621 + 204443117 204443417 AluSp 311 - 10 310 98258 300 chain 24642 chr1 249250621 + 204467742 204468034 AluSp 311 + 1 293 106767 292 chain 6881 chr1 249250621 + 204475654 204475727 tRNA-Lys-AAA 73 + 0 73 178343 73 chain 6881 chr1 249250621 + 204476157 204476230 tRNA-Lys-AAA 73 - 0 73 178345 73 chain 24629 chr1 249250621 + 204477345 204477648 AluSx3 311 + 4 306 106836 119 1 0 183 chain 17914 chr1 249250621 + 204488402 204488641 AluSp 311 + 53 288 133073 14 0 2 58 11 5 156 chain 21971 chr1 249250621 + 204496509 204496787 AluSp 311 + 10 298 120350 127 10 20 141 chain 4781 chr1 249250621 + 204509432 204509484 Tigger4b 360 + 241 293 197570 52 chain 10644 chr1 249250621 + 204521007 204521127 MER30 238 - 0 120 157629 120 chain 3440 chr1 249250621 + 204525182 204525221 LTR8 732 + 586 625 216369 39 chain 34033 chr1 249250621 + 204529143 204529570 MER57A1 433 - 9 433 77575 139 5 6 38 4 0 241 chain 9125 chr1 249250621 + 204531538 204531649 5S 121 - 0 121 164942 81 1 11 29 chain 4895 chr1 249250621 + 204577579 204577665 MER5B 177 - 87 177 196317 15 18 22 53 chain 24276 chr1 249250621 + 204598541 204598884 THE1A 353 + 0 353 108802 47 0 1 31 6 15 17 0 2 6 17 15 219 chain 27341 chr1 249250621 + 204607530 204607837 AluSg7 307 - 0 307 95143 307 chain 26483 chr1 249250621 + 204610155 204610555 MER65A 464 + 61 464 98104 74 0 1 6 1 3 70 14 15 85 1 0 42 8 6 79 8 10 12 chain 12285 chr1 249250621 + 204734240 204734371 L1PA5 6144 - 14 145 151059 131 chain 80259 chr1 249250621 + 204754007 204755040 L1PA8 5853 - 0 1022 43487 93 1 0 19 2 1 45 1 5 11 2 1 70 5 3 41 1 0 240 0 1 237 0 1 78 0 3 49 14 0 124 chain 7642 chr1 249250621 + 204755040 204755140 L1MA5 2750 - 170 271 173269 18 1 0 24 0 2 57 chain 33184 chr1 249250621 + 204760122 204760485 L1PA4 6152 + 5780 6143 78927 363 chain 3355 chr1 249250621 + 204766867 204766930 LTR33 499 + 419 480 217961 22 16 14 25 chain 13254 chr1 249250621 + 204785254 204785474 Tigger2a 444 - 227 444 147271 26 4 0 38 27 25 9 0 6 10 3 0 103 chain 46848 chr1 249250621 + 204813800 204814365 LTR19B 566 - 0 566 61346 52 3 0 16 0 5 197 2 1 295 chain 5254 chr1 249250621 + 204830527 204830584 L1MB5 1630 - 481 538 192471 57 chain 2829 chr1 249250621 + 204847505 204847535 MADE1 96 - 58 88 228241 30 chain 38637 chr1 249250621 + 204850853 204851338 MER31A 484 + 0 484 71237 476 1 0 8 chain 3462 chr1 249250621 + 204861446 204861484 MLT1H2 457 - 22 60 215972 38 chain 18002 chr1 249250621 + 204883342 204883677 THE1C 375 + 0 335 132850 85 0 1 23 30 34 41 25 22 34 12 9 16 3 4 66 chain 8478 chr1 249250621 + 204887448 204887596 MER30 238 + 62 238 168412 31 30 61 45 3 0 39 chain 4914 chr1 249250621 + 204996379 204996440 MER5A 189 + 1 62 196124 61 chain 20442 chr1 249250621 + 205069913 205070234 MER1B 344 - 0 344 125780 61 20 21 159 7 22 39 12 19 23 chain 23018 chr1 249250621 + 205077093 205077384 AluSc 308 + 3 293 115538 254 2 1 35 chain 23374 chr1 249250621 + 205086516 205086795 AluSp 311 + 10 289 113788 279 chain 34615 chr1 249250621 + 205107796 205108235 LTR2 463 + 0 462 76738 162 8 29 4 1 0 13 0 1 153 12 13 65 0 1 21 chain 15731 chr1 249250621 + 205120136 205120333 Tigger3b 1229 - 145 346 139174 69 0 4 128 chain 2897 chr1 249250621 + 205121733 205121935 Tigger4a 237 + 0 114 227100 25 92 4 18 49 49 18 chain 24347 chr1 249250621 + 205123784 205124097 THE1C-int 1605 + 49 423 108387 61 0 54 151 12 18 48 0 1 41 chain 24766 chr1 249250621 + 205149251 205149587 L1PA8 5853 - 0 343 106077 57 0 14 22 1 0 17 9 8 42 1 0 14 2 1 70 2 0 44 1 0 54 chain 17925 chr1 249250621 + 205157431 205157678 Tigger3c 601 - 26 269 133047 51 0 2 19 12 6 165 chain 11332 chr1 249250621 + 205191411 205192081 MER30 238 - 1 228 154952 31 10 7 40 0 6 26 2 0 5 486 42 70 chain 38079 chr1 249250621 + 205250272 205250709 L1PA5 6144 + 5701 6144 72015 190 2 0 9 0 8 236 chain 25446 chr1 249250621 + 205271741 205272026 AluSp 311 + 4 289 102471 285 chain 7771 chr1 249250621 + 205281993 205282090 L1MB2 1706 + 1380 1477 172473 97 chain 23785 chr1 249250621 + 205291951 205292222 AluYc3 301 - 28 300 111562 158 1 2 112 chain 21859 chr1 249250621 + 205334037 205334301 AluSg7 307 - 43 307 120786 132 0 1 22 1 0 109 chain 38391 chr1 249250621 + 205341321 205341846 LTR61 567 - 9 567 71586 28 1 0 13 1 2 9 6 5 110 0 25 171 9 6 74 0 1 20 1 0 28 0 11 29 0 1 25 chain 557996 chr1 249250621 + 205369833 205375986 L1PA3long 6157 - 4 6157 499 142 0 3 813 7 2 832 0 4 97 1 0 1906 0 1 547 1 0 401 0 1 364 1 0 968 2 1 71 chain 24538 chr1 249250621 + 205433613 205433918 AluSc 308 - 13 308 107319 12 10 0 283 chain 5652 chr1 249250621 + 205443278 205443342 tRNA-Lys-AAA 73 + 8 72 188552 64 chain 33844 chr1 249250621 + 205467279 205467710 MER1A 529 - 76 529 77863 409 8 30 14 chain 20072 chr1 249250621 + 205516699 205516975 AluSc5 308 + 11 285 126912 37 33 31 206 chain 3025 chr1 249250621 + 205542012 205542057 L1MB7 1623 + 1385 1429 224467 37 1 0 7 chain 23645 chr1 249250621 + 205603179 205603456 AluSp 311 - 22 295 112335 157 4 0 116 chain 23720 chr1 249250621 + 205654916 205655221 AluSp 311 - 16 311 111933 7 9 0 18 2 1 269 chain 10598 chr1 249250621 + 205704370 205704565 Tigger3a 397 + 158 374 157838 121 57 78 17 chain 26438 chr1 249250621 + 205713758 205714059 AluSp 311 - 10 311 98274 301 chain 7812 chr1 249250621 + 205725747 205725915 L1MA9 1812 - 161 322 172234 4 0 1 24 8 6 24 1 0 13 1 0 11 6 4 26 14 12 36 chain 44595 chr1 249250621 + 205745896 205746413 MER9a1 513 - 5 513 63486 99 19 10 399 chain 66728 chr1 249250621 + 205746429 205747213 HERVK9-int 4720 - 16 924 49766 158 0 28 80 0 96 546 chain 50954 chr1 249250621 + 205791982 205792808 L1PA16 3655 - 36 845 58339 14 52 27 32 9 21 104 8 5 37 0 3 85 3 1 86 1 0 64 40 42 107 1 0 69 1 0 24 1 0 88 chain 3294 chr1 249250621 + 205795926 205795981 MIRb 242 + 74 131 219088 25 6 8 24 chain 22042 chr1 249250621 + 205820244 205820494 AluSp 311 - 51 301 120059 250 chain 99508 chr1 249250621 + 205825127 205826574 L1PB 1623 + 105 1515 36903 7 1 0 5 1 0 70 1 0 4 2 0 78 1 0 134 1 0 12 1 0 68 10 9 90 1 2 4 1 0 517 18 8 10 9 1 322 1 0 7 8 7 24 1 0 4 3 0 14 4 0 13 chain 111821 chr1 249250621 + 205827514 205829122 HERVK14-int 1672 + 6 1665 33714 24 1 0 10 1 0 31 11 11 8 1 0 39 13 13 159 14 18 19 8 6 224 1 0 47 1 0 204 1 0 35 0 1 6 1 0 53 6 73 73 6 4 8 2 0 32 2 1 203 3 1 107 1 0 63 1 0 31 2 0 9 1 0 46 17 18 76 1 0 6 chain 24041 chr1 249250621 + 205835459 205835790 LTR17 781 - 455 781 110112 71 7 6 16 1 0 54 1 0 23 1 0 98 1 0 58 chain 11136 chr1 249250621 + 205836936 205837057 L1PA3long 6157 - 0 121 155683 121 chain 176740 chr1 249250621 + 205837426 205839647 HERV17-int 4347 - 21 4334 21276 591 1 1673 279 0 6 6 6 0 136 8 8 159 2 1 119 0 1 76 0 1 358 6 0 147 0 430 196 1 0 17 11 9 35 1 0 50 2 1 14 chain 78538 chr1 249250621 + 205840873 205842352 HERVH-int 3825 + 2095 3824 44249 13 1 3 168 5 6 5 1 0 308 0 8 194 11 0 184 437 689 5 1 0 146 chain 26855 chr1 249250621 + 205843797 205844210 LTR7B 505 + 0 495 96788 108 0 10 52 14 82 33 1 0 43 18 24 89 14 13 41 chain 26874 chr1 249250621 + 205853726 205854124 LTR7B 505 - 64 505 96726 42 0 1 36 1 0 80 0 2 12 31 0 16 3 27 12 0 38 62 0 10 103 chain 85611 chr1 249250621 + 205855917 205859371 HERVH-int 3825 - 1 3747 41301 797 0 1 10 1 0 46 2233 2527 25 23 22 62 20 19 237 chain 5782 chr1 249250621 + 205859460 205859552 LTR7B 505 - 15 106 187341 36 14 13 42 chain 42450 chr1 249250621 + 205859818 205860325 MER9a2 513 + 0 513 66077 445 0 6 62 chain 248316 chr1 249250621 + 205861660 205864770 HERVK9-int 4720 + 36 4720 16346 13 8 5 4 1 0 39 0 6 21 1 0 7 2 1 30 1 0 91 16 0 14 0 13 406 0 8 51 4 0 437 0 6 308 0 924 231 51 689 458 18 20 240 1 2 64 0 3 70 0 1 198 1 0 324 chain 41522 chr1 249250621 + 205864770 205865283 MER9a2 513 + 0 508 67257 12 7 1 64 0 2 286 1 0 143 chain 496607 chr1 249250621 + 205868439 205874733 L1PA6 6164 + 0 6152 7029 149 0 1 110 1 2 82 47 20 86 19 0 115 57 0 4 19 0 77 0 5 92 26 5 39 0 17 588 5 4 69 1 5 170 1 2 210 68 11 454 9 8 864 0 1 39 2 3 277 0 3 482 1 2 283 1 0 89 0 4 522 4 5 272 12 14 115 0 15 147 3 5 298 10 11 240 0 1 135 chain 3531 chr1 249250621 + 205877835 205877878 MLT1A0 366 - 79 122 214869 43 chain 27803 chr1 249250621 + 206072905 206073266 L1PA5 6144 + 5783 6144 93680 5 3 0 59 0 7 30 3 1 247 3 1 11 chain 17612 chr1 249250621 + 206087543 206087778 AluY 311 + 74 302 133958 59 1 0 47 0 1 4 11 4 113 chain 41740 chr1 249250621 + 206091609 206092103 L1PA7 6471 - 12 505 66975 322 1 0 171 chain 11789 chr1 249250621 + 206146122 206146298 Tigger1 2417 - 13 184 153098 38 4 0 13 1 0 17 0 1 71 9 8 23 chain 13160 chr1 249250621 + 206252123 206252317 MER75B 242 - 0 222 147615 26 13 42 65 1 0 89 chain 39988 chr1 249250621 + 206269839 206270381 MLT2A2 560 + 0 552 69337 148 0 1 34 1 0 9 24 23 185 3 14 138 chain 2841 chr1 249250621 + 206272562 206272598 MER103C 291 - 141 177 228075 36 chain 171155 chr1 249250621 + 206276043 206278006 SVA_D 2077 - 3 2070 21922 592 0 98 330 0 51 44 56 16 26 3 1 8 3 0 901 chain 4149 chr1 249250621 + 206277012 206277065 SVA_D 2077 - 894 947 77913 53 chain 37481 chr1 249250621 + 206282458 206282934 LTR2B 499 - 0 490 72840 180 1 0 10 0 1 184 0 19 36 4 0 55 1 0 5 chain 59075 chr1 249250621 + 206286484 206287243 Harlequin-int 5206 - 4319 5080 53349 275 5 4 126 5 1 118 0 5 50 0 2 17 0 1 65 2 1 11 0 1 61 3 0 6 1 0 8 0 3 6 chain 38034 chr1 249250621 + 206288369 206288844 LTR2B 499 - 0 490 72081 180 1 0 10 0 1 178 0 19 46 3 0 51 1 0 5 chain 22829 chr1 249250621 + 206294851 206295129 AluSp 311 + 21 297 116446 111 2 0 165 chain 510580 chr1 249250621 + 206501159 206506662 L1PA2 6032 - 0 6032 6112 14 0 2 1786 0 4 1165 1 0 2439 0 524 98 chain 29481 chr1 249250621 + 206533152 206533460 AluYa5 310 - 2 310 86710 308 chain 24497 chr1 249250621 + 206551908 206552227 LTR12 884 + 2 884 107562 23 9 8 22 0 41 171 0 523 94 chain 13465 chr1 249250621 + 206639088 206639284 MER30 238 + 0 238 146466 16 0 18 56 7 32 7 4 0 67 0 3 39 chain 28923 chr1 249250621 + 206655110 206655420 AluYa5 310 - 0 310 89359 310 chain 15310 chr1 249250621 + 206719949 206720146 MER47A 366 - 35 232 140465 197 chain 36442 chr1 249250621 + 206720614 206721075 MER1A 529 + 67 529 74310 384 4 5 73 chain 23734 chr1 249250621 + 206786345 206786618 AluSp 311 + 38 311 111864 273 chain 26565 chr1 249250621 + 206789894 206790228 LTR14A 344 + 0 344 97787 102 0 11 73 13 12 146 chain 3850 chr1 249250621 + 206790228 206790275 L1MC3 1789 + 338 385 209643 47 chain 18811 chr1 249250621 + 206797193 206797527 THE1C 375 + 0 341 130646 15 2 0 32 0 6 17 20 21 18 17 6 64 0 3 18 9 6 19 6 19 97 chain 30612 chr1 249250621 + 206799901 206800258 L1PA5 6144 + 5775 6134 83184 200 0 1 24 1 2 132 chain 15364 chr1 249250621 + 206814445 206814846 L1PB1 5432 - 10 370 140309 18 1 0 5 1 0 7 1 0 22 1 0 20 66 50 4 1 0 16 1 0 12 16 13 19 6 5 10 2 1 52 2 0 9 5 1 14 1 0 10 1 0 17 6 1 14 5 4 36 chain 107152 chr1 249250621 + 206815025 206816264 L1PA5 6144 + 4880 6123 34930 20 0 5 969 1 3 73 3 5 134 5 0 34 chain 33971 chr1 249250621 + 206939193 206939652 MER4A1 472 - 0 472 77658 85 13 0 112 14 13 16 0 21 66 0 2 139 0 4 14 chain 28704 chr1 249250621 + 206949929 206950255 LTR17 781 + 0 326 90316 326 chain 40601 chr1 249250621 + 206952292 206952858 LTR14B 630 + 10 630 68440 151 1 0 38 0 40 23 0 11 21 0 25 74 0 9 34 30 0 194 chain 13950 chr1 249250621 + 206969864 206970101 Tigger3a 397 + 28 337 144754 44 17 67 39 1 0 79 21 44 36 chain 28869 chr1 249250621 + 206980263 206980635 THE1C 375 - 1 374 89588 170 0 3 15 1 2 59 3 0 124 chain 13916 chr1 249250621 + 207024900 207025100 L1MA2 4263 + 990 1627 144868 43 0 2 9 2 0 7 3 7 108 3 436 25 chain 21223 chr1 249250621 + 207035292 207035553 AluY 311 + 38 299 123126 95 1 0 141 0 1 24 chain 5689 chr1 249250621 + 207084693 207084764 MER33 330 - 39 110 188209 71 chain 3690 chr1 249250621 + 207092283 207092329 MER115 684 - 70 116 212090 46 chain 3574 chr1 249250621 + 207171958 207172132 L1MB7 1623 + 1248 1413 214071 17 2 0 3 2 0 14 107 102 29 chain 4611 chr1 249250621 + 207209227 207209291 MER99 766 + 365 428 199501 59 1 0 4 chain 8609 chr1 249250621 + 207209429 207209554 MSTB 430 - 305 430 167674 51 5 6 50 1 0 18 chain 55560 chr1 249250621 + 207214580 207215239 L1PA7 6471 - 1 662 55379 160 1 0 219 0 1 112 0 1 130 6 7 31 chain 27776 chr1 249250621 + 207269026 207269393 MSTA 426 + 28 397 93773 102 1 0 83 15 19 13 2 1 151 chain 18310 chr1 249250621 + 207271883 207272359 MER1A 529 - 8 281 132049 23 47 42 156 198 0 52 chain 3206 chr1 249250621 + 207272122 207272163 MER1A 529 - 238 281 220835 12 0 2 29 chain 4099 chr1 249250621 + 207272258 207272307 MER1A 529 - 229 278 202584 49 chain 4548 chr1 249250621 + 207272359 207272408 MER1A 529 - 232 281 197055 49 chain 4548 chr1 249250621 + 207272408 207272457 MER1A 529 - 232 281 197054 49 chain 4433 chr1 249250621 + 207272457 207272506 MER1A 529 - 232 281 198473 49 chain 26206 chr1 249250621 + 207291655 207292034 THE1C 375 - 0 375 99179 133 18 14 32 9 10 39 1 0 147 chain 3576 chr1 249250621 + 207303760 207303879 L1MB7 1623 + 1304 1418 214032 15 25 24 21 28 24 30 chain 66580 chr1 249250621 + 207315269 207316060 L1PA7 6471 - 4 796 49837 606 0 1 149 2 1 6 0 1 28 chain 57957 chr1 249250621 + 207316170 207316840 L1PA7 6471 + 5798 6470 53998 4 1 0 9 0 2 112 0 1 544 chain 2905 chr1 249250621 + 207335333 207335370 L1M1 2793 + 2495 2532 226956 37 chain 23522 chr1 249250621 + 207356679 207356961 L1PA5 6144 + 5857 6144 113003 77 0 3 193 1 3 11 chain 6899 chr1 249250621 + 207364773 207364887 L1PB1 5432 - 10 119 178198 14 0 1 5 0 1 9 1 0 22 1 0 24 2 0 14 1 0 5 3 1 13 chain 508957 chr1 249250621 + 207369348 207375407 L1PA6 6164 + 37 6149 6247 199 0 2 55 1 0 224 0 2 48 1 0 376 0 6 411 0 1 111 0 1 57 4 0 213 1 29 562 17 0 248 0 4 27 0 9 523 0 5 8 14 10 12 4 5 314 6 33 830 0 4 277 5 0 295 5 0 1211 chain 546519 chr1 249250621 + 207380079 207386252 L1PA4 6152 + 0 6152 1882 653 6 7 1291 20 0 305 0 2 1416 0 2 1248 5 0 92 6 5 1131 chain 27924 chr1 249250621 + 207405374 207405680 AluYa5 310 - 4 310 93265 306 chain 21659 chr1 249250621 + 207409443 207409731 AluSg7 307 + 10 296 121547 95 6 4 22 0 1 67 2 1 96 chain 152495 chr1 249250621 + 207410384 207412707 L1MA2 4263 + 1764 4058 24284 69 0 1 57 2 5 22 2 60 10 15 0 6 71 0 122 1 0 118 10 5 230 0 1 159 4 0 13 1 0 94 1 0 237 13 4 187 0 2 133 11 14 137 6 22 94 1 0 18 2 0 6 2 0 6 1 0 32 0 2 31 13 12 44 1 5 74 13 10 56 1 8 82 31 23 56 6 5 22 chain 27907 chr1 249250621 + 207425304 207425793 L1MA3 4352 - 0 450 93335 22 6 2 15 7 6 19 8 6 24 2 0 67 1 0 11 1 0 67 3 0 7 37 13 118 0 1 46 3 1 25 chain 111804 chr1 249250621 + 207428253 207429794 THE1C-int 1605 - 12 1572 33717 193 0 1 444 2 3 28 7 6 77 1 0 90 61 55 27 3 34 117 36 23 43 0 7 412 chain 9364 chr1 249250621 + 207438400 207438523 MER85 139 - 0 134 163736 29 0 11 94 chain 3691 chr1 249250621 + 207438546 207438589 MLT2B3 573 + 527 570 212071 43 chain 26072 chr1 249250621 + 207453651 207454112 L1PA15 4387 + 3898 4356 99742 35 1 0 171 1 0 20 7 15 46 1 0 21 4 0 10 2 1 25 0 1 9 21 18 19 41 40 27 chain 22049 chr1 249250621 + 207463993 207464337 THE1B 368 + 0 368 120026 44 14 29 99 1 0 22 39 49 125 chain 121385 chr1 249250621 + 207464337 207465919 THE1B-int 1605 + 0 1605 30570 35 0 2 132 8 4 257 0 25 71 20 21 331 12 7 164 0 1 436 0 2 106 1 2 9 chain 20301 chr1 249250621 + 207465919 207466258 THE1B 368 + 0 368 126231 44 0 15 71 10 11 31 1 0 16 53 63 55 0 4 58 chain 17983 chr1 249250621 + 207472901 207473115 MER75B 242 - 26 242 132911 171 0 2 43 chain 90462 chr1 249250621 + 207476812 207477878 MER11C 1089 - 16 1089 39480 83 0 2 395 0 1 18 8 7 246 0 4 67 7 8 242 chain 26986 chr1 249250621 + 207481074 207481358 AluYb8 318 + 34 318 96328 284 chain 34458 chr1 249250621 + 207493597 207494002 L1PA7 6471 + 6047 6453 76981 268 0 1 137 chain 26037 chr1 249250621 + 207543078 207543421 L1PA8 5853 + 5515 5851 99873 49 1 0 46 2 0 69 1 0 13 1 0 48 2 1 19 2 1 90 chain 20161 chr1 249250621 + 207552075 207552311 L1PA5 6144 - 7 243 126640 236 chain 33986 chr1 249250621 + 207567067 207567834 LTR3B_ 500 + 0 467 77636 76 1 0 75 7 17 126 1 0 8 2 1 58 312 0 60 0 5 41 chain 13756 chr1 249250621 + 207586867 207587068 MER30 238 - 0 238 145415 111 5 0 6 22 64 57 chain 7286 chr1 249250621 + 207599046 207599210 THE1D 372 - 210 372 175547 21 1 6 49 38 30 26 1 0 10 5 7 13 chain 44928 chr1 249250621 + 207601340 207601909 LTR19B 566 - 0 566 63139 113 7 8 146 8 0 24 0 4 98 0 1 4 1 0 168 chain 5615 chr1 249250621 + 207612132 207612240 L1PB3 3668 + 3482 3582 188923 19 2 0 27 3 1 34 10 6 13 chain 5259 chr1 249250621 + 207613962 207614033 MADE1 96 - 2 92 192419 28 0 19 43 chain 11605 chr1 249250621 + 207620277 207620569 L1MB8 1703 - 167 466 153868 63 130 137 99 chain 20740 chr1 249250621 + 207658431 207658690 L1PA7 6471 + 6209 6466 124815 250 2 0 7 chain 9016 chr1 249250621 + 207664423 207664536 MSTA-int 1630 - 1517 1630 165516 113 chain 18944 chr1 249250621 + 207668563 207668778 L1PA5 6144 - 0 215 130245 215 chain 130823 chr1 249250621 + 207702923 207704399 L1PA5 6144 - 9 1489 27904 9 1 0 831 0 4 591 0 1 44 chain 130823 chr1 249250621 + 207721478 207722954 L1PA5 6144 - 9 1489 27903 9 1 0 831 0 4 591 0 1 44 chain 445235 chr1 249250621 + 207762665 207767957 L1PA7 6471 + 1162 6467 8896 291 11 7 100 1 0 185 0 9 281 1 0 454 1 0 151 0 1 65 0 4 22 0 5 334 0 2 122 0 1 109 0 1 11 4 2 71 0 1 158 0 4 23 0 2 328 0 1 724 0 2 197 1 0 118 14 1 338 1 0 333 0 4 74 0 2 673 0 1 80 3 0 13 chain 22787 chr1 249250621 + 207792116 207792410 AluSc 308 + 8 308 116648 48 8 11 73 0 2 63 1 2 101 chain 38695 chr1 249250621 + 207807095 207807544 LTR7 482 - 0 482 71156 94 0 2 94 0 31 261 chain 82319 chr1 249250621 + 207808456 207809419 LTR5_Hs 974 - 0 974 42618 104 2 0 38 0 8 624 0 1 181 0 4 14 chain 164626 chr1 249250621 + 207810272 207812636 HERVK-int 6823 - 303 5123 22721 11 1 0 5 1 0 26 1 0 5 76 59 25 5 3 13 3 1 14 1 0 12 2 0 9 171 101 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 57 0 288 356 0 4 146 1 0 68 0 2255 101 0 1 633 2 1 99 0 30 109 chain 4756 chr1 249250621 + 207829114 207829214 Charlie1b 519 - 183 281 197846 15 2 0 17 1 3 15 2 0 27 1 2 8 1 0 11 chain 294102 chr1 249250621 + 207833825 207837115 L1P1 4361 - 1053 4360 13759 743 0 1 257 1 0 603 1 0 910 0 1 34 0 1 280 0 1 173 0 1 173 0 14 115 chain 18450 chr1 249250621 + 207855273 207855493 L1PA7 6471 + 6242 6462 131641 220 chain 45942 chr1 249250621 + 207892112 207892617 L1PA2 6032 + 5528 6031 62092 491 2 0 12 chain 132245 chr1 249250621 + 207894540 207895974 L1PA2 6032 - 4 1439 27578 192 0 1 1242 chain 550875 chr1 249250621 + 207903811 207909840 L1PA2 6032 + 2 6032 1333 253 2 1 1357 0 1 1529 0 2 1368 1 0 1519 chain 38342 chr1 249250621 + 207913893 207914470 LTR9B 643 + 0 594 71662 187 0 1 10 32 31 78 0 1 24 8 11 78 25 24 72 0 14 63 chain 62514 chr1 249250621 + 207914507 207915265 LTR17 781 - 8 781 51674 23 0 22 401 0 1 17 10 0 85 0 1 133 0 1 89 chain 145874 chr1 249250621 + 207918553 207920757 HUERS-P3b-int 2065 + 13 2052 25195 81 3 0 222 83 8 118 9 9 11 0 9 107 3 0 109 4 0 30 10 0 59 2 1 51 4 3 17 3 2 171 4 0 63 15 2 134 9 8 143 14 16 84 1 0 44 29 2 84 2 0 13 1 0 24 1 0 20 0 3 67 3 1 75 3 0 6 0 1 8 4 1 11 0 1 52 4 0 57 1 0 49 0 1 40 28 7 14 chain 496064 chr1 249250621 + 207943756 207949834 L1PA6 6164 - 5 6163 7065 147 3 4 361 0 1 146 0 1 38 0 1 136 3 7 866 4 0 381 0 2 362 2 0 8 7 9 90 0 1 143 0 1 209 0 4 51 0 1 359 1 12 63 7 8 117 0 1 129 1 0 164 0 2 612 1 0 267 0 2 22 0 4 42 1 0 174 0 5 169 0 1 34 0 17 169 2 19 43 2 1 9 4 1 174 0 3 84 1 2 31 8 0 268 0 1 24 0 15 98 0 1 41 chain 74261 chr1 249250621 + 207951585 207952653 L1PA14 3548 - 92 1134 46381 41 19 17 5 1 0 16 4 2 31 22 17 106 1 0 84 9 6 13 5 3 5 2 0 105 2 0 5 2 0 47 2 0 5 0 1 7 4 2 124 0 1 125 1 0 151 1 0 123 chain 7926 chr1 249250621 + 207965812 207965924 MER85 139 - 13 139 171468 27 1 11 39 1 5 44 chain 4719 chr1 249250621 + 208017687 208017741 L1MB3 1562 + 1266 1320 198287 54 chain 4064 chr1 249250621 + 208038254 208038408 MER58A 224 - 23 179 206425 31 91 93 32 chain 34074 chr1 249250621 + 208051459 208051839 L1PA3long 6157 + 5777 6157 77509 380 chain 3971 chr1 249250621 + 208111124 208111169 MER57C2 434 - 0 45 207831 45 chain 12928 chr1 249250621 + 208150095 208150239 L1PA5 6144 + 5996 6140 148511 144 chain 5621 chr1 249250621 + 208160373 208160488 L1PB1 5432 - 10 117 188860 18 1 0 4 9 8 22 1 0 24 2 0 14 1 0 5 3 1 11 chain 7180 chr1 249250621 + 208163229 208163482 L1MB3 1562 - 144 392 176204 14 52 48 5 1 0 30 54 58 62 14 9 10 0 1 11 chain 25591 chr1 249250621 + 208168131 208168484 L1PA8 5853 + 5508 5853 101776 13 1 0 43 1 0 45 2 0 69 2 1 8 2 1 52 2 1 19 1 0 93 chain 3617 chr1 249250621 + 208329825 208329868 MIRb 242 - 109 152 213388 43 chain 29025 chr1 249250621 + 208360050 208360365 AluYb8 318 - 5 318 88883 187 2 0 126 chain 4770 chr1 249250621 + 208430326 208430382 MLT1C 463 - 342 398 197689 56 chain 28904 chr1 249250621 + 208480373 208480676 AluYa5 310 - 7 310 89439 303 chain 11640 chr1 249250621 + 208512721 208512908 MER53 195 + 6 195 153737 80 24 26 83 chain 31188 chr1 249250621 + 208527314 208527679 L1PA5 6144 + 5778 6143 82185 365 chain 11488 chr1 249250621 + 208530546 208530705 MER30 238 + 53 238 154343 54 2 31 55 3 0 45 chain 39026 chr1 249250621 + 208618273 208618731 LTR2 463 - 2 463 70702 403 0 3 55 chain 120206 chr1 249250621 + 208660918 208662348 LTR12C 1709 - 0 1709 30978 481 0 4 106 4 2 4 1 0 127 0 278 257 21 22 75 1 0 353 chain 3443 chr1 249250621 + 208685174 208685384 MER8 282 - 22 282 216303 4 1 0 11 14 23 19 28 27 19 84 127 30 chain 121172 chr1 249250621 + 208689504 208691067 THE1A-int 1579 - 0 1575 30645 284 7 3 183 15 16 99 3 1 133 4 10 164 0 6 23 0 1 4 1 0 4 5 8 301 1 3 332 chain 23403 chr1 249250621 + 208691068 208691414 THE1A 353 - 0 346 113631 219 26 26 14 1 0 46 6 7 34 chain 17137 chr1 249250621 + 208735904 208736278 THE1C 375 - 0 372 135215 25 19 14 87 107 119 56 9 0 71 chain 26244 chr1 249250621 + 208743079 208743567 L1PB1 5432 - 2 458 99038 18 1 0 7 2 1 13 1 0 21 1 0 24 62 46 4 1 0 15 1 0 45 1 0 68 2 0 9 5 1 11 1 0 13 1 0 18 16 13 87 0 2 40 chain 29684 chr1 249250621 + 208758980 208759352 THE1C 375 + 0 375 85888 142 0 4 204 1 0 25 chain 257939 chr1 249250621 + 208792326 208796465 L1MA1 4479 + 314 4162 15811 43 30 8 283 7 8 113 0 1 17 4 0 38 4 5 12 4 0 273 11 5 41 38 42 52 0 1 27 0 1 231 0 1 163 10 21 18 0 1 182 0 7 39 1 0 4 7 8 160 1 0 1 2 0 36 1 0 9 1 0 223 18 20 11 14 15 40 0 3 43 12 11 71 1 0 43 0 1 21 276 1 49 11 12 42 3 1 32 1 0 46 0 1 15 1 0 81 12 11 27 11 9 167 2 0 5 0 1 8 4 0 76 1 0 12 5 0 41 12 7 50 0 4 24 3 0 130 3 4 192 1 0 24 2 0 13 8 7 12 0 2 53 1 0 19 2 0 14 1 0 88 9 5 119 8 7 17 0 23 21 4 3 9 1 0 11 chain 18691 chr1 249250621 + 208794687 208794913 AluY 311 + 34 257 130970 33 4 0 65 0 1 124 chain 67556 chr1 249250621 + 208832280 208833004 SVA_F 1814 - 3 776 49416 673 0 49 51 chain 3662 chr1 249250621 + 208834560 208834600 MER5A 189 + 35 75 212533 40 chain 554767 chr1 249250621 + 208876045 208882372 L1PA3long 6157 + 4 6157 851 610 1 0 1068 0 2 38 0 6 2163 0 1 715 164 0 176 22 0 444 3 2 81 0 4 503 0 1 339 chain 26772 chr1 249250621 + 208892685 208892985 AluYa5 310 - 0 299 97080 192 1 0 107 chain 12415 chr1 249250621 + 208898039 208898229 L1MA3 4352 - 44 230 150574 20 1 0 6 1 0 23 2 0 23 4 0 29 0 4 81 chain 121464 chr1 249250621 + 208912842 208914265 LTR12C 1709 + 0 1709 30547 212 4 6 42 1 2 409 0 280 161 1 0 4 4 2 106 0 4 30 1 3 448 chain 3260 chr1 249250621 + 208924492 208924629 MER5B 177 + 18 167 219777 21 87 99 29 chain 22721 chr1 249250621 + 208937678 208937944 AluSc 308 + 15 281 116974 266 chain 7197 chr1 249250621 + 208939486 208939570 L1PA2 6032 + 5948 6032 176080 84 chain 81676 chr1 249250621 + 208978620 208980142 L1PA14 3548 - 119 1300 42898 14 1 0 17 1 0 8 1 0 12 4 2 33 5 1 10 1 0 111 1 0 34 1 0 50 1 0 6 2 0 17 4 0 109 9 5 58 15 12 8 1 0 189 10 17 28 2 1 38 5 10 7 2 0 56 0 1 36 8 7 78 323 0 206 chain 20423 chr1 249250621 + 209027818 209028119 MER51B 395 + 91 395 125833 6 0 6 107 10 8 27 13 12 138 chain 17983 chr1 249250621 + 209029944 209030162 AluY 311 + 82 295 132910 87 5 0 126 chain 203551 chr1 249250621 + 209033481 209036248 L1PB2 3958 + 581 3377 18957 20 0 4 133 0 2 183 0 1 27 0 2 303 1 0 5 20 15 298 2 0 23 1 0 232 3 2 125 10 7 149 0 1 53 0 29 283 22 14 102 1 0 49 1 0 5 6 7 108 0 11 120 0 1 23 6 6 57 1 0 202 1 0 5 0 1 118 2 0 56 1 0 4 0 4 6 chain 23987 chr1 249250621 + 209100588 209100874 AluY 311 + 11 301 110396 19 0 2 99 0 2 168 chain 3148 chr1 249250621 + 209132628 209132665 MSTA 426 + 377 414 221957 37 chain 3073 chr1 249250621 + 209154677 209154718 MIR 256 + 215 256 223486 41 chain 13345 chr1 249250621 + 209157481 209157823 THE1B 368 + 0 353 146915 47 51 125 12 66 0 14 9 16 16 1 0 10 4 3 45 2 0 65 chain 5161 chr1 249250621 + 209160234 209160300 MSTD 398 + 0 68 193433 58 0 2 8 chain 9537 chr1 249250621 + 209162972 209163092 L1PA16 3655 + 3348 3468 162904 120 chain 531656 chr1 249250621 + 209164802 209170915 L1PA5 6144 + 0 6135 4004 120 0 14 466 0 1 354 0 1 213 8 0 62 1 0 4 0 2 1076 3 1 145 0 1 487 0 1 30 0 5 2500 0 3 176 0 9 236 4 0 228 chain 8489 chr1 249250621 + 209170924 209171027 MER41A 554 + 360 466 168357 30 0 3 73 chain 4896 chr1 249250621 + 209178073 209178147 L1MC4 1079 + 553 623 196302 59 4 0 11 chain 2898 chr1 249250621 + 209214938 209214970 L1PA5 6144 + 5859 5891 227061 32 chain 22332 chr1 249250621 + 209214971 209215224 L1PA5 6144 + 5891 6144 118766 253 chain 122979 chr1 249250621 + 209226055 209228184 L1PA13 3608 + 113 1928 30056 23 12 9 18 1 0 14 3 0 25 27 16 73 2 0 111 0 3 11 8 7 5 1 0 17 2 0 16 6 2 17 2 1 17 2 0 11 10 8 17 1 0 41 0 5 51 2 0 9 313 1 299 6 4 109 1 0 60 1 0 5 0 4 16 0 1 20 2 5 121 0 1 105 0 2 112 3 7 22 0 4 120 0 1 127 1 2 40 5 8 4 0 1 6 0 5 76 chain 4750 chr1 249250621 + 209257789 209257848 MSTC 436 - 373 433 197914 18 0 1 41 chain 156938 chr1 249250621 + 209301782 209303557 SVA_D 2077 + 0 2071 23734 25 6 0 517 0 40 323 1 0 15 1 38 45 0 178 165 0 1 4 1 0 1 0 49 195 1 0 169 1 0 72 0 1 233 chain 36197 chr1 249250621 + 209305762 209306212 LTR2 463 + 0 463 74629 112 2 4 11 0 3 151 0 1 14 0 7 160 chain 73484 chr1 249250621 + 209314535 209315518 LTR5_Hs 974 + 0 974 46794 115 5 13 157 0 1 181 0 1 18 23 0 170 1 0 163 15 22 12 20 18 103 chain 27899 chr1 249250621 + 209357759 209358530 L1PB1 5432 + 4838 5415 93371 149 186 38 78 26 14 21 1 0 4 3 2 12 18 12 52 7 6 10 1 0 45 1 0 10 82 62 17 1 0 22 1 0 11 2 1 11 chain 27648 chr1 249250621 + 209367729 209368026 AluYa5 310 - 17 310 94217 196 4 0 97 chain 49340 chr1 249250621 + 209426712 209427257 L1PA5 6144 - 2 547 59492 545 chain 28479 chr1 249250621 + 209434517 209434822 AluYa5 310 + 1 306 91272 305 chain 11894 chr1 249250621 + 209450487 209450692 Tigger3a 397 - 0 209 152630 44 48 52 113 chain 219032 chr1 249250621 + 209453342 209455728 L1PA3long 6157 + 3752 6156 17943 327 0 21 1854 3 0 202 chain 29162 chr1 249250621 + 209493454 209493758 AluYb8 318 - 14 318 88243 304 chain 24956 chr1 249250621 + 209495441 209495711 L1PA3long 6157 + 5062 5332 105025 270 chain 74647 chr1 249250621 + 209495717 209496527 L1PA3long 6157 + 5339 6149 46188 810 chain 12521 chr1 249250621 + 209521829 209521972 MER107 203 - 58 201 150163 143 chain 17663 chr1 249250621 + 209531070 209531289 L1P3 4156 - 17 233 133793 23 1 0 9 2 0 184 chain 25368 chr1 249250621 + 209531289 209531613 L1PA7 6471 + 6108 6431 102841 12 12 11 300 chain 42869 chr1 249250621 + 209556247 209556801 MER41A 554 + 0 547 65572 87 2 1 80 7 0 262 0 1 116 chain 11110 chr1 249250621 + 209564746 209565041 MER47A 366 + 35 315 155773 15 54 55 103 78 62 45 chain 44621 chr1 249250621 + 209583314 209583843 MER41A 554 + 0 530 63459 232 0 1 297 chain 40055 chr1 249250621 + 209622149 209622601 LTR7 482 + 0 482 69241 260 1 32 62 1 0 128 chain 249005 chr1 249250621 + 209622603 209625807 HERVH-int 3825 + 0 3146 16310 212 0 11 266 2 0 43 5 0 38 129 0 10 1 0 24 29 0 15 8 0 11 8 46 22 2 1 57 0 1 7 0 2 11 1 4 442 15 0 460 13 33 70 7 15 205 0 4 65 0 1 209 0 12 22 0 1 4 0 1 745 9 11 30 0 28 7 chain 3237 chr1 249250621 + 209623259 209623297 HERVH-int 3825 + 532 570 220306 38 chain 38905 chr1 249250621 + 209626896 209627339 LTR7 482 + 0 474 70860 246 3 34 194 chain 11796 chr1 249250621 + 209634023 209634192 LTR8A 794 + 135 311 153060 37 1 2 17 5 11 109 chain 2695 chr1 249250621 + 209659087 209659181 MER34A 573 + 7 63 230272 27 53 15 14 chain 33210 chr1 249250621 + 209665249 209665689 MER4A1 472 + 0 461 78863 18 19 36 175 1 3 110 0 2 117 chain 32439 chr1 249250621 + 209681336 209681699 L1PA4 6152 + 5782 6151 80130 346 0 6 17 chain 9957 chr1 249250621 + 209684558 209685099 L1MB7 1623 + 1064 1532 160793 17 26 15 91 153 125 11 1 0 14 8 6 19 112 90 20 55 46 14 chain 22257 chr1 249250621 + 209725452 209725814 Tigger4b 360 - 0 360 119092 46 18 17 128 1 0 91 19 36 14 18 1 27 chain 19165 chr1 249250621 + 209740173 209740545 THE1B 368 - 0 368 129632 124 98 93 34 13 14 103 chain 24115 chr1 249250621 + 209813622 209813904 AluSg 306 + 10 292 109663 282 chain 4263 chr1 249250621 + 209835772 209835825 MER81 114 + 41 94 203715 53 chain 5629 chr1 249250621 + 209871639 209871703 MER53 195 - 131 195 188770 64 chain 117498 chr1 249250621 + 209872942 209874501 THE1A-int 1579 - 0 1579 31967 115 2 1 228 4 17 114 24 25 146 2 3 99 7 3 86 8 12 59 7 8 18 8 9 152 8 11 175 6 7 291 chain 26413 chr1 249250621 + 209874502 209874846 THE1A 353 - 1 343 98360 154 1 0 88 6 5 95 chain 30400 chr1 249250621 + 209892916 209893301 L1PA6 6164 - 161 555 83682 78 13 19 221 0 3 73 chain 12005 chr1 249250621 + 209893302 209893450 L1PA6 6164 + 6014 6160 152176 140 2 0 6 chain 20690 chr1 249250621 + 209899399 209899649 AluSc 308 + 54 307 125002 222 0 3 28 chain 20776 chr1 249250621 + 209905943 209906200 L1PA5 6144 - 0 259 124689 9 2 0 150 1 4 8 1 2 86 chain 49209 chr1 249250621 + 209912922 209914074 L1PB1 5432 + 4645 5420 59585 65 1 0 16 319 0 55 0 1 5 0 5 6 1 0 197 13 13 95 1 2 9 33 0 15 6 5 13 1 0 11 8 4 5 2 0 53 2 1 9 5 6 41 7 6 10 17 4 30 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 28306 chr1 249250621 + 209967208 209967670 L1PA15 4387 - 22 465 91919 9 1 0 27 5 0 14 3 1 44 6 3 44 8 6 12 4 0 22 1 0 43 10 9 27 1 0 105 1 3 64 1 0 10 chain 8763 chr1 249250621 + 209990224 209990352 MER53 195 + 0 168 166850 73 9 49 46 chain 14835 chr1 249250621 + 210031371 210031905 LTR12C 1709 - 270 777 141824 30 328 255 21 0 47 148 1 0 6 chain 80169 chr1 249250621 + 210039940 210040998 MER11A 1151 + 0 1151 43521 23 1 0 32 0 99 22 8 0 20 1 0 3 1 0 13 3 0 15 0 4 63 0 2 86 6 7 268 0 2 16 1 0 130 14 14 43 3 0 210 0 4 9 7 6 60 chain 11701 chr1 249250621 + 210061211 210061387 MER2 342 - 22 205 153459 20 4 6 77 10 15 65 chain 5373 chr1 249250621 + 210062094 210062200 LTR12C 1709 - 664 932 191279 43 21 184 31 1 0 10 chain 14745 chr1 249250621 + 210065517 210065714 MER2 342 - 53 260 142117 143 0 11 18 1 0 35 chain 116446 chr1 249250621 + 210071321 210072711 LTR12C 1709 - 0 1709 32296 154 1 0 327 0 4 107 2 0 6 1 0 13 0 319 184 0 1 486 5 4 104 chain 565828 chr1 249250621 + 210087138 210093168 L1HS 6032 - 1 6032 168 5824 0 1 206 chain 9859 chr1 249250621 + 210109650 210109775 MER85 139 - 0 135 161290 40 0 10 85 chain 11221 chr1 249250621 + 210115150 210115369 MER2 342 - 21 253 155342 4 1 0 18 52 53 97 1 14 46 chain 539353 chr1 249250621 + 210146566 210152695 L1PA4 6152 - 9 6149 2919 398 1 2 1627 0 6 242 0 2 53 0 1 287 9 10 936 1 0 259 1 0 270 0 1 768 0 1 1277 chain 77777 chr1 249250621 + 210153455 210154512 L1PA11 4918 - 401 1458 44626 9 4 0 17 8 7 12 2 0 65 2 0 13 2 1 44 0 3 10 1 5 76 0 1 38 1 0 368 0 1 158 0 2 27 2 0 74 1 3 123 chain 3753 chr1 249250621 + 210164007 210164102 L1MA3 4352 + 4258 4322 211087 24 1 0 6 1 0 17 33 4 13 chain 94473 chr1 249250621 + 210212727 210213870 L1PA7 6471 + 5308 6469 38216 291 0 4 301 1 0 50 0 12 170 0 1 273 1 5 44 2 0 10 chain 21242 chr1 249250621 + 210222778 210223046 L1PA7 6471 - 2 267 123046 10 2 0 148 4 3 104 chain 5473 chr1 249250621 + 210238542 210238878 THE1C 375 + 0 337 99580 116 1 0 66 12 12 9 0 3 36 1 0 95 chain 92600 chr1 249250621 + 210239079 210240105 L1PA4 6152 - 4 1035 38786 11 0 3 867 0 2 148 chain 635 chr1 249250621 + 210240106 210240145 THE1C 375 + 337 375 99580 13 1 0 25 chain 12069 chr1 249250621 + 210248988 210249158 LTR1 825 - 643 812 151901 112 2 0 26 9 10 21 chain 25249 chr1 249250621 + 210261546 210261839 L1PA7 6471 - 1 294 103480 293 chain 19953 chr1 249250621 + 210261839 210262063 L1PA7 6471 + 5969 6193 127293 224 chain 60062 chr1 249250621 + 210262227 210262909 L1PA7 6471 - 2 684 52793 682 chain 26249 chr1 249250621 + 210279742 210280116 THE1C 375 - 0 375 99024 25 1 0 202 4 0 10 4 8 62 5 7 61 chain 31788 chr1 249250621 + 210280137 210280519 THE1C-int 1605 - 19 400 81191 260 1 0 121 chain 69581 chr1 249250621 + 210282440 210283619 L1PA7 6471 + 5602 6467 48579 19 0 3 125 1 0 5 1 4 41 333 2 22 0 11 210 0 1 422 chain 221010 chr1 249250621 + 210286267 210289190 HERVH-int 3825 - 260 3825 17817 270 3 4 26 11 22 57 8 375 9 11 0 357 32 31 5 0 1 306 25 30 357 0 27 257 9 0 202 15 0 449 0 265 20 0 1 9 10 12 56 8 7 66 27 26 318 chain 15506 chr1 249250621 + 210293822 210294022 Tigger3c 601 + 339 569 139875 130 0 30 70 chain 28858 chr1 249250621 + 210295316 210295622 AluYa5 310 - 5 310 89630 179 1 0 126 chain 4163 chr1 249250621 + 210327750 210327801 MER1B 344 + 284 335 205057 51 chain 20809 chr1 249250621 + 210330813 210331072 AluSc5 308 + 11 266 124571 9 4 0 246 chain 27574 chr1 249250621 + 210360948 210361365 LTR7B 505 + 0 505 94420 105 0 10 56 12 81 34 40 0 20 0 50 85 11 10 54 chain 69427 chr1 249250621 + 210364017 210364871 HERVH-int 3825 + 2970 3825 48639 46 1 0 148 2 3 413 0 1 244 chain 26576 chr1 249250621 + 210368645 210369015 LTR7B 505 + 0 497 97739 105 0 10 56 12 81 32 1 0 22 0 50 85 14 13 43 chain 77729 chr1 249250621 + 210369411 210370427 MER11A 1151 - 0 1151 44645 163 6 7 44 1 2 14 0 1 23 0 1 34 3 37 4 1 0 12 0 1 128 0 1 140 0 1 94 0 1 67 2 0 48 0 2 32 4 0 66 1 0 54 4 103 71 chain 16618 chr1 249250621 + 210379912 210380192 THE1D 372 + 81 372 136619 19 6 5 55 0 1 8 43 53 90 0 1 59 chain 23635 chr1 249250621 + 210382272 210382543 AluY 311 + 38 311 112386 94 0 1 139 0 1 38 chain 9309 chr1 249250621 + 210411920 210412051 MER85 139 + 0 139 164021 95 7 15 29 chain 3623 chr1 249250621 + 210454732 210454817 Charlie4a 502 + 367 452 213297 29 14 0 8 8 22 26 chain 46118 chr1 249250621 + 210471032 210471581 MER41A 554 + 0 552 61930 317 0 3 232 chain 7352 chr1 249250621 + 210482300 210482410 MLT1C 463 - 0 111 175081 88 6 7 16 chain 111031 chr1 249250621 + 210497024 210498952 L1M1 2793 - 361 2009 33921 15 1 0 89 0 1 39 0 4 36 1 0 45 0 1 80 18 17 60 1 0 261 0 3 59 0 2 16 33 33 103 319 29 117 0 2 104 0 1 46 7 0 19 4 0 72 6 5 47 2 1 68 1 2 52 1 0 13 11 31 59 10 7 54 1 0 6 2 0 30 1 0 19 chain 157236 chr1 249250621 + 210504470 210506639 Charlie3 2679 - 96 2410 23696 50 2 14 76 11 7 22 1 0 186 10 11 75 8 13 206 0 1 24 0 6 37 3 13 17 12 18 67 0 2 49 0 3 24 0 3 191 34 47 110 17 0 47 0 3 92 13 109 124 6 7 235 0 3 20 0 1 131 0 5 124 0 2 5 1 0 4 5 0 130 chain 36418 chr1 249250621 + 210516323 210516810 LTR3B_ 500 + 0 493 74343 78 1 0 61 2 1 21 0 1 136 6 5 39 0 3 30 0 5 113 chain 5521 chr1 249250621 + 210547549 210547612 U5 65 - 1 64 189823 63 chain 29410 chr1 249250621 + 210559571 210559881 AluYa5 310 - 0 310 87020 310 chain 10928 chr1 249250621 + 210562558 210562758 MSTC 436 - 47 274 156491 26 0 5 27 3 9 27 40 56 77 chain 18480 chr1 249250621 + 210564219 210564491 L1PB2 3958 - 120 387 131556 63 8 7 15 13 11 63 1 0 62 1 0 46 chain 10046 chr1 249250621 + 210593888 210594008 L1PA4 6152 + 6031 6151 160341 120 chain 259987 chr1 249250621 + 210615197 210618019 L1PA2 6032 - 4 2833 15700 1180 0 7 1642 chain 22065 chr1 249250621 + 210624195 210624452 AluY 311 + 51 304 119940 77 4 0 176 chain 9864 chr1 249250621 + 210643191 210643332 L1PA8 5853 - 9 148 161266 84 4 3 13 2 1 38 chain 9684 chr1 249250621 + 210653661 210653786 MER85 139 - 0 135 162177 39 0 10 86 chain 3469 chr1 249250621 + 210682389 210682468 MADE1 96 - 1 92 215830 22 20 36 13 4 0 20 chain 26525 chr1 249250621 + 210730836 210731188 THE1A 353 - 0 353 97954 31 0 1 158 1 2 51 2 0 5 2 3 102 chain 27326 chr1 249250621 + 210736009 210736321 L1PA4 6152 - 9 320 95188 251 1 0 60 chain 27389 chr1 249250621 + 210741795 210742200 MER51B 395 - 0 395 95005 60 0 4 86 1 0 139 6 6 61 21 9 4 1 0 26 chain 18789 chr1 249250621 + 210749805 210750015 L1PA4 6152 + 5936 6146 130711 210 chain 71267 chr1 249250621 + 210753735 210754593 L1PA8A 6298 - 7 879 47819 156 0 1 152 0 14 470 5 1 6 0 3 69 chain 4546 chr1 249250621 + 210766166 210766223 L1MA3 4352 - 3003 3060 200255 57 chain 21703 chr1 249250621 + 210766225 210766478 L1PA5 6144 - 0 253 121373 253 chain 112170 chr1 249250621 + 210768328 210769591 L1PA4 6152 - 18 1278 33620 840 2 0 251 1 0 169 chain 3394 chr1 249250621 + 210772494 210772565 MER3 215 + 89 160 217192 24 17 17 30 chain 12447 chr1 249250621 + 210782201 210782491 THE1D 372 - 71 361 150471 76 1 0 18 36 41 17 13 17 29 38 39 10 9 0 43 chain 138854 chr1 249250621 + 210783519 210785361 L1PA11 4918 - 401 2248 26339 11 2 0 17 1 0 15 2 0 65 7 8 6 1 0 30 0 1 33 5 0 114 0 3 81 8 8 68 0 1 47 0 1 203 7 9 79 1 0 174 11 15 189 0 1 6 6 5 86 1 5 209 0 1 114 1 0 242 chain 76010 chr1 249250621 + 210787766 210788634 L1PA5 6144 - 9 880 45474 778 1 0 62 0 4 27 chain 65532 chr1 249250621 + 210788639 210789394 L1P1 4361 - 3076 4357 50325 243 0 1 424 0 525 88 chain 4922 chr1 249250621 + 210805508 210805585 MLT1C 463 + 7 94 196019 12 9 19 56 chain 6307 chr1 249250621 + 210831842 210831912 L1PA6 6164 - 3532 3602 180634 70 chain 290075 chr1 249250621 + 210831912 210835340 L1PA6 6164 + 2631 6161 14015 558 0 1 85 1 3 130 0 4 9 0 1 128 0 13 599 0 4 172 0 1 704 2 0 268 1 0 4 0 1 101 0 13 470 3 14 19 30 85 9 0 1 126 2 0 7 chain 5017 chr1 249250621 + 210873982 210874094 MER58A 224 - 18 156 194961 38 35 61 39 chain 20788 chr1 249250621 + 210883423 210883932 Tigger3c 601 - 123 547 124655 70 13 28 67 6 4 68 0 8 48 0 2 7 96 8 15 2 0 5 77 59 35 chain 23090 chr1 249250621 + 210892738 210893052 L1PA8 5853 + 5545 5853 115196 17 1 0 48 2 0 69 1 0 13 1 0 48 2 1 16 5 4 52 0 1 39 chain 12738 chr1 249250621 + 210895003 210895151 L1PA4 6152 + 6000 6152 149297 96 0 4 52 chain 17987 chr1 249250621 + 210909646 210909880 AluSp 311 + 38 277 132895 133 4 5 75 0 4 22 chain 3414 chr1 249250621 + 210922847 210922946 MER5A1 166 + 38 127 216872 35 15 16 12 22 11 15 chain 3174 chr1 249250621 + 210931425 210931458 L1M2a1 1281 + 820 853 221466 33 chain 25365 chr1 249250621 + 210943356 210943712 L1PA8 5853 + 5507 5852 102855 57 1 0 46 2 0 56 1 0 12 2 1 8 2 1 4 1 0 8 2 0 38 7 6 16 1 0 92 chain 29794 chr1 249250621 + 210962027 210962337 AluYa5 310 - 0 310 85476 310 chain 5668 chr1 249250621 + 210976828 210976931 MER96B 391 - 55 170 188410 25 18 31 7 1 0 52 chain 16141 chr1 249250621 + 210979198 210979715 L1MB8 1703 - 207 742 137929 22 10 9 30 2 0 5 17 18 79 50 67 33 171 173 29 6 7 63 chain 2915 chr1 249250621 + 210994305 210994368 MLT1D 503 + 432 496 226782 32 19 20 12 chain 124032 chr1 249250621 + 211006650 211008026 L1PA3long 6157 + 4770 6147 29691 1053 1 2 322 chain 71701 chr1 249250621 + 211011265 211012334 L1PA11 4918 + 3601 4578 47603 301 1 0 100 74 0 228 0 2 94 1 0 69 1 0 12 2 1 67 2 0 13 3 5 15 4 0 9 36 27 10 1 0 13 2 0 11 chain 301297 chr1 249250621 + 211017725 211021082 L1PA4 6152 + 2793 6151 13358 2506 1 2 850 chain 93249 chr1 249250621 + 211044365 211045403 L1PA3long 6157 + 5118 6156 38582 1038 chain 25139 chr1 249250621 + 211054736 211055372 L1MC1 2226 + 1609 2189 104076 64 90 68 103 16 17 28 6 0 28 1 0 56 24 19 47 31 24 23 63 49 13 5 4 32 1 0 5 chain 446906 chr1 249250621 + 211058468 211064889 L1PA6 6164 + 4 6162 8851 35 2 9 29 0 1 114 18 20 104 237 57 77 255 150 139 27 6 11 0 1 35 1 18 208 0 1 6 1 0 9 16 17 5 1 0 289 25 26 63 13 22 7 9 0 257 0 4 5 3 0 81 1 2 229 6 7 277 14 0 141 11 9 107 0 4 654 0 4 160 0 3 120 6 5 827 1 13 943 1 5 30 0 1 12 0 1 4 1 0 22 18 17 123 0 1 631 chain 54641 chr1 249250621 + 211064890 211065552 L1PA7 6471 + 5793 6457 55943 42 0 1 207 0 1 72 0 1 191 9 8 141 chain 5977 chr1 249250621 + 211084847 211084911 L1PA2 6032 + 5967 6031 185452 64 chain 381568 chr1 249250621 + 211099629 211104974 L1PB1 5432 + 21 5404 10712 12 4 6 110 23 24 128 0 7 7 8 0 85 0 1 4 1 0 197 1 0 71 3 4 281 12 0 7 24 44 396 6 14 13 0 1 277 1 0 7 10 11 205 0 3 80 11 4 363 16 29 53 0 1 19 0 17 10 3 0 67 0 1 7 0 5 221 3 5 88 0 1 483 1 0 90 0 2 250 2 0 319 12 8 144 0 1 20 2 3 158 1 0 220 0 4 17 2 0 113 0 12 13 6 10 29 3 4 296 16 12 23 8 6 14 5 1 9 2 0 51 1 0 18 1 0 45 1 0 14 1 0 4 2 0 9 7 0 15 25 20 26 1 0 19 0 2 13 chain 38930 chr1 249250621 + 211106431 211106865 L1PA3long 6157 + 5723 6157 70829 434 chain 8823 chr1 249250621 + 211106943 211107097 L1MA5 2750 + 25 170 166536 30 1 0 10 21 15 4 1 0 4 1 0 82 chain 23719 chr1 249250621 + 211121900 211122199 AluY 311 + 11 310 111939 122 3 0 81 1 6 70 2 0 20 chain 39605 chr1 249250621 + 211123560 211123996 L1PA2 6032 - 0 437 69884 157 0 1 279 chain 514056 chr1 249250621 + 211127246 211133383 L1PA6 6164 - 4 6164 5769 145 8 0 182 1 2 509 0 4 1521 5 6 268 15 4 209 0 1 975 0 2 309 1 2 161 0 4 833 1 0 199 0 17 240 1 0 48 0 2 24 0 14 62 5 0 6 0 2 409 chain 78835 chr1 249250621 + 211137786 211138935 L1PA6 6164 + 3344 4359 44131 230 0 1 271 7 8 24 0 2 88 10 9 136 1 0 188 0 2 6 8 6 30 136 0 14 chain 10843 chr1 249250621 + 211138785 211138918 L1PA6 6164 + 4626 4759 156508 133 chain 78963 chr1 249250621 + 211138941 211139879 L1PA6 6164 + 4370 5313 44077 273 1 0 651 0 6 13 chain 62518 chr1 249250621 + 211139880 211140667 L1PA6 6164 + 5324 6157 51671 124 0 3 302 1 2 80 1 0 12 0 43 267 chain 89606 chr1 249250621 + 211141208 211142187 L1PA2 6032 - 0 979 39778 979 chain 22669 chr1 249250621 + 211143461 211143818 L1PA8 5853 - 8 324 117220 84 6 5 14 7 6 54 1 0 74 2 0 6 35 0 38 1 0 35 chain 47564 chr1 249250621 + 211143818 211144458 L1PA8A 6298 + 5017 5654 60797 356 1 0 4 7 10 85 0 4 7 28 17 70 0 2 82 chain 5367 chr1 249250621 + 211148565 211148632 L1P1 4361 - 1116 1180 191338 6 3 0 58 chain 61075 chr1 249250621 + 211150089 211150798 L1PA5 6144 + 5425 6144 52299 332 0 12 363 3 1 11 chain 538281 chr1 249250621 + 211155634 211161773 L1PA4 6152 - 21 6152 3108 109 0 1 1140 6 5 588 0 2 32 9 6 462 10 0 415 0 1 70 0 1 2062 0 1 1236 chain 518674 chr1 249250621 + 211169349 211175552 L1PA5 6144 + 3 6142 5311 557 10 9 257 35 1 79 10 16 362 0 9 8 22 13 802 4 5 722 1 0 1105 1 3 216 0 1 62 1 0 177 0 1 1402 0 1 41 0 1 214 36 0 68 4 0 7 chain 49932 chr1 249250621 + 211184324 211184920 L1PA7 6471 - 3 598 59069 12 1 0 177 0 2 379 7 5 20 chain 8286 chr1 249250621 + 211194358 211194470 L1PB1 5432 + 5167 5277 169477 53 2 1 15 1 0 41 chain 7380 chr1 249250621 + 211194504 211194633 L1PB1 5432 + 5297 5416 174896 30 3 0 5 1 0 14 2 0 24 1 0 22 1 0 12 3 1 11 chain 12199 chr1 249250621 + 211196609 211196841 L1MA5 2750 + 2393 2631 151428 65 9 22 81 52 45 25 chain 248397 chr1 249250621 + 211204436 211207256 L1PA4 6152 + 3339 6141 16340 447 17 0 1305 5 6 433 2 0 611 chain 27599 chr1 249250621 + 211208579 211208868 AluYa5 310 - 0 289 94349 289 chain 21952 chr1 249250621 + 211211104 211211751 THE1A 353 + 0 353 120415 74 0 1 8 20 21 6 1 0 77 313 0 25 1 19 122 chain 128351 chr1 249250621 + 211211751 211213620 THE1A-int 1579 + 0 1572 28484 440 0 2 29 0 4 510 4 6 87 0 3 425 309 1 65 chain 22658 chr1 249250621 + 211213627 211213973 THE1A 353 + 0 353 117287 20 4 5 38 2 5 10 26 33 51 3 0 56 1 0 135 chain 218088 chr1 249250621 + 211215800 211218746 L1PB1 5432 + 1804 5420 18000 267 1 0 158 31 40 53 5 6 47 0 3 117 6 8 153 1 0 186 1 0 47 0 15 425 1 0 123 0 1 259 3 686 201 3 4 26 3 1 175 2 10 199 8 6 47 0 1 26 14 9 14 0 1 7 10 0 9 1 0 4 1 0 8 1 0 12 5 1 10 2 0 51 2 1 16 1 0 40 44 31 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 4627 chr1 249250621 + 211221334 211221391 L1PB1 5432 + 4623 4680 199333 57 chain 49912 chr1 249250621 + 211221391 211222182 L1PB1 5432 + 4682 5430 59082 421 1 0 13 13 0 22 1 0 4 22 17 9 3 1 51 2 1 16 1 0 44 1 0 14 3 0 7 12 6 15 12 9 14 2 0 18 1 2 4 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 520696 chr1 249250621 + 211248954 211255307 L1PA6 6164 + 1 6153 5082 448 17 16 102 1 0 187 0 1 4 9 8 475 0 1 411 0 2 11 8 9 136 1 0 518 9 0 7 0 1 27 1 0 410 0 1 374 196 0 35 1 0 4 0 1 110 1 0 1378 0 1 273 0 1 788 1 0 163 0 1 112 0 1 135 chain 4256 chr1 249250621 + 211274141 211274192 MER5A1 166 + 0 51 203799 51 chain 2928 chr1 249250621 + 211284782 211284812 SVA_F 1814 + 1243 1273 226553 30 chain 3926 chr1 249250621 + 211284956 211285095 SVA_F 1814 + 374 536 208477 39 81 104 19 chain 30920 chr1 249250621 + 211288662 211289042 MLT2A1 477 + 0 385 82650 142 0 1 26 1 5 211 chain 159900 chr1 249250621 + 211294070 211296277 L1PA8A 6298 + 4375 6290 23352 275 0 3 533 6 5 294 1 0 14 295 0 81 0 1 602 0 1 106 chain 2980 chr1 249250621 + 211298075 211298108 LTR33 499 - 59 92 225443 33 chain 15925 chr1 249250621 + 211313594 211314359 L1PA15-16 3068 - 361 1040 138596 18 8 6 12 2 0 5 68 35 14 1 0 15 4 0 3 3 0 15 1 0 6 1 0 10 1 0 14 1 0 4 1 0 17 83 75 17 8 6 16 85 68 6 5 0 35 38 32 22 102 108 5 1 0 31 2 1 8 2 0 75 chain 25480 chr1 249250621 + 211322115 211322412 AluY 311 + 7 302 102314 126 3 1 168 chain 42173 chr1 249250621 + 211337284 211337989 L1PREC2 3366 - 400 1075 66434 14 3 0 21 7 6 4 1 0 11 56 43 13 3 0 5 1 0 43 1 0 31 5 7 16 2 0 8 20 16 299 3 0 138 chain 2434 chr1 249250621 + 211343347 211343383 MSTA 426 - 35 72 233909 9 1 2 26 chain 3710 chr1 249250621 + 211358521 211358631 MIR 256 - 0 105 211791 17 22 20 35 23 20 13 chain 61529 chr1 249250621 + 211370681 211371355 SVA_C 1631 + 950 1625 52101 45 8 9 621 chain 59998 chr1 249250621 + 211394426 211395114 LTR12_ 688 + 0 688 52825 688 chain 385767 chr1 249250621 + 211396442 211400943 HERV9-int 5642 + 328 4824 10583 274 1 2 191 1 0 203 0 1 9 0 1 102 3 0 193 6 0 2021 6 7 1131 0 1 360 chain 54674 chr1 249250621 + 211402187 211402851 LTR12_ 688 + 0 688 55923 117 4 29 21 2 1 520 chain 11956 chr1 249250621 + 211410411 211410640 Tigger3b 1229 + 63 290 152382 31 31 32 39 4 3 12 5 0 69 3 6 35 chain 17656 chr1 249250621 + 211415744 211415947 L1PA6 6164 + 5853 6058 133823 162 0 2 41 chain 7687 chr1 249250621 + 211415948 211416051 L1PA6 6164 + 6060 6160 172998 94 3 0 6 chain 31326 chr1 249250621 + 211419819 211420268 MER4A1 472 - 0 472 81946 72 30 36 20 1 2 39 1 14 21 1 0 141 0 4 123 chain 39903 chr1 249250621 + 211436216 211436656 L1PA3long 6157 - 0 440 69451 440 chain 25300 chr1 249250621 + 211441709 211442007 AluSp 311 - 0 300 103227 181 0 2 117 chain 29481 chr1 249250621 + 211445954 211446262 AluYa5 310 - 2 310 86709 308 chain 15316 chr1 249250621 + 211464613 211464836 Tigger4a 237 + 0 237 140439 28 2 9 128 0 11 7 4 1 42 1 0 11 chain 4633 chr1 249250621 + 211524668 211524727 MLT1A0 366 - 205 265 199273 7 0 2 6 1 0 45 chain 24627 chr1 249250621 + 211525433 211525775 THE1B 368 - 5 368 106848 163 4 0 26 1 0 37 0 4 21 0 7 38 8 23 44 chain 8903 chr1 249250621 + 211571192 211571335 L1MA3 4352 - 28 162 166122 10 1 0 26 1 0 5 2 1 24 2 0 23 4 0 45 chain 37390 chr1 249250621 + 211572061 211572627 MER11C 1089 + 487 1059 72971 47 66 65 91 1 5 4 1 0 38 0 1 127 0 1 52 1 0 75 0 2 42 0 1 21 chain 530930 chr1 249250621 + 211575632 211581753 L1PA5 6144 - 4 6130 4086 54 1 0 5 6 0 690 1 0 97 1 0 551 1 0 398 0 4 664 0 2 2284 4 12 797 7 8 560 chain 41575 chr1 249250621 + 211624181 211626727 L1MA1 4479 + 652 2388 19338 20 0 3 304 0 1 6 50 12 90 12 13 39 10 11 116 0 1 354 0 1 64 1 11 174 0 1 15 0 2 30 0 1 33 965 172 36 4 0 7 1 2 4 1 0 11 0 4 65 6 5 128 chain 534435 chr1 249250621 + 211626743 211632836 L1PA5 6144 + 3 6128 3659 156 28 37 791 0 5 21 1 0 58 2 0 5 0 2 443 1 2 4 1 0 667 0 2 1308 0 16 900 1 0 322 0 1 1197 0 1 187 chain 144542 chr1 249250621 + 211633171 211634821 SVA_D 2077 + 137 2056 25391 759 1 5 21 0 39 25 1 0 50 0 2 16 0 127 148 0 98 629 chain 23955 chr1 249250621 + 211634855 211636322 L1MA1 4479 + 2684 4139 19338 87 2 0 33 1 0 44 0 1 23 1 0 20 0 5 61 1 0 27 2 0 76 4 3 59 1 2 41 11 7 78 1 0 12 4 0 126 4 0 64 0 9 58 1 0 194 3 0 5 0 2 5 0 7 6 2 0 16 1 0 71 1 0 9 4 1 10 2 0 6 8 7 88 1 0 5 3 0 115 10 14 26 2 0 32 chain 29418 chr1 249250621 + 211639932 211640284 THE1A 353 + 0 351 86996 111 1 0 240 chain 3523 chr1 249250621 + 211646027 211646069 MLT1J2 417 - 122 164 215023 42 chain 25085 chr1 249250621 + 211701814 211702232 LTR7B 505 - 10 505 104384 40 15 14 79 1 0 63 0 90 12 46 22 57 1 11 14 0 3 90 chain 27321 chr1 249250621 + 211714200 211714567 THE1B 368 - 3 368 95203 65 2 0 100 4 0 63 0 1 94 0 5 16 8 6 15 chain 91004 chr1 249250621 + 211723533 211724797 HSMAR1 1287 + 9 1285 39293 107 5 9 180 4 0 59 8 9 182 0 1 105 15 18 73 7 10 34 0 1 113 5 7 185 9 8 125 0 3 22 8 7 18 chain 3162 chr1 249250621 + 211729769 211729834 MLT1B 390 - 220 284 221708 36 15 14 14 chain 51683 chr1 249250621 + 211799116 211799821 L1PA3long 6157 + 5562 6142 57833 261 0 1 135 126 0 183 chain 5363 chr1 249250621 + 211812225 211812318 MER21A 919 - 781 895 191406 14 7 27 11 4 5 57 chain 9504 chr1 249250621 + 211815035 211815196 MER57B1 401 - 0 168 163051 58 29 38 6 2 0 66 chain 35519 chr1 249250621 + 211860396 211860843 LTR2 463 + 0 463 75528 124 0 11 33 0 4 187 15 16 88 chain 429656 chr1 249250621 + 211862379 211867461 Harlequin-int 5206 + 125 5206 9316 244 3 1 104 3 0 8 2 0 525 1 0 166 18 1 118 3 2 204 4 5 360 0 1 186 0 2 439 0 2 66 0 4 195 1 2 75 0 8 110 4 3 586 0 2 132 4 0 1101 0 8 317 0 1 103 chain 36806 chr1 249250621 + 211867461 211867923 LTR2 463 + 0 463 73794 362 12 13 88 chain 8461 chr1 249250621 + 211876679 211876866 MLT1C 463 + 0 180 168506 40 34 33 30 3 4 17 17 10 46 chain 42029 chr1 249250621 + 211880067 211880600 MER41A 554 + 1 535 66584 133 0 1 42 1 0 4 36 37 317 chain 9054 chr1 249250621 + 211883415 211884043 MER41-int 2638 + 134 2636 165294 36 336 10 31 36 0 7 30 41 30 40 2265 82 chain 41820 chr1 249250621 + 211884065 211884609 MER41A 554 + 13 554 66866 164 1 0 4 7 8 74 8 5 286 chain 4934 chr1 249250621 + 211888839 211888897 L1MB2 1706 - 12 70 195878 58 chain 20297 chr1 249250621 + 211892874 211893232 THE1B 368 + 6 368 126235 105 0 3 6 2 0 57 69 73 56 7 6 56 chain 41976 chr1 249250621 + 211942793 211943332 MER41A 554 - 7 554 66651 50 0 4 178 0 1 186 11 14 114 chain 42137 chr1 249250621 + 211951084 211951945 MER41A 554 + 13 554 66462 308 327 2 146 1 6 79 chain 25914 chr1 249250621 + 211968713 211969008 AluSp 311 - 16 311 100357 295 chain 3062 chr1 249250621 + 211980395 211980430 L1MD 993 + 170 205 223770 35 chain 23356 chr1 249250621 + 211981420 211981708 AluSp 311 + 15 298 113893 194 14 9 80 chain 7799 chr1 249250621 + 211998536 211998633 AluJr4 308 - 2 104 172314 28 0 1 4 0 4 65 chain 20264 chr1 249250621 + 212008125 212008349 L1PA4 6152 + 5914 6138 126334 224 chain 22320 chr1 249250621 + 212017621 212017920 HSMAR2 1300 - 0 304 118827 186 7 8 13 0 1 10 0 3 83 chain 28801 chr1 249250621 + 212023554 212023864 AluYa5 310 - 0 310 89896 310 chain 46061 chr1 249250621 + 212027948 212028733 LTR1 825 - 0 812 61988 11 0 3 75 0 1 70 0 3 242 1 14 14 5 13 7 9 0 17 26 25 11 64 53 30 26 28 25 1 0 67 5 12 24 0 12 55 chain 23036 chr1 249250621 + 212029139 212029414 LTR17 781 - 457 781 115468 225 3 52 47 chain 58582 chr1 249250621 + 212030548 212031215 HERV17-int 4347 - 1441 2109 53655 134 0 1 533 chain 93331 chr1 249250621 + 212031215 212032263 HERV17-int 4347 + 1168 2217 38557 177 2 1 130 0 1 127 0 1 612 chain 6824 chr1 249250621 + 212038073 212038225 L1MC1 2226 - 2062 2202 178760 25 9 2 38 36 32 4 1 0 39 chain 101024 chr1 249250621 + 212046744 212048115 LTR12C 1709 - 0 1625 36508 84 14 13 26 0 1 5 0 2 14 0 101 23 0 1 209 13 6 17 24 0 89 6 53 7 0 41 180 1 0 49 0 122 181 0 1 23 29 0 377 chain 11991 chr1 249250621 + 212063218 212063525 LTR12C 1709 + 769 1038 152242 47 119 0 21 1 0 27 4 45 68 1 42 19 chain 4953 chr1 249250621 + 212063265 212063372 LTR12C 1709 + 975 1086 167445 27 45 49 35 chain 9718 chr1 249250621 + 212070970 212071111 MER85 139 - 0 139 161995 37 9 10 37 2 0 4 1 0 51 chain 4574 chr1 249250621 + 212075537 212075635 MER52A 1651 + 789 920 199957 19 5 0 29 21 59 24 chain 195565 chr1 249250621 + 212126744 212128914 L1PA3long 6157 - 0 2179 19535 500 1 2 341 0 4 807 0 4 521 chain 21890 chr1 249250621 + 212174406 212174692 AluSp 311 - 9 311 120662 43 0 1 84 2 1 99 6 22 52 chain 3370 chr1 249250621 + 212174831 212174884 MER2 342 + 147 201 217665 12 6 7 35 chain 99802 chr1 249250621 + 212187884 212189065 SVA_B 1603 + 0 1603 36829 21 9 27 117 1 3 245 6 287 152 1 0 10 1 0 21 0 38 26 6 91 565 chain 105663 chr1 249250621 + 212196196 212197797 L1PA16 3655 - 36 1653 35337 16 5 0 7 44 18 277 17 15 8 0 1 6 2 1 64 0 4 71 4 0 27 2 3 5 0 2 109 2 3 36 6 7 17 1 0 19 1 0 14 2 6 76 0 4 115 15 37 55 0 5 182 0 6 99 2 3 62 4 0 50 1 5 83 22 26 73 chain 4141 chr1 249250621 + 212197868 212198029 L1ME1 1623 + 1328 1484 205346 26 83 84 8 6 0 38 chain 7181 chr1 249250621 + 212237944 212238083 L1MC1 2226 - 313 448 176202 10 2 0 13 9 3 33 11 12 43 0 3 18 chain 26496 chr1 249250621 + 212256392 212256743 THE1B 368 - 2 368 98059 73 0 1 120 12 11 102 0 15 44 chain 233784 chr1 249250621 + 212265923 212270285 L1PB1 5432 - 276 3527 17099 12 3 1 5 1 0 22 5 0 9 8 9 277 0 25 117 2 1 48 5 0 10 1 0 6 854 0 216 0 1 305 1 2 4 1 0 241 12 10 22 0 2 73 0 13 239 1 0 5 19 18 249 281 0 207 0 1 77 19 23 70 1 0 89 0 1 111 1 0 139 1 2 17 6 0 73 0 1 156 1 0 13 6 0 45 1 10 131 2 0 19 4 0 85 0 5 34 chain 9276 chr1 249250621 + 212272889 212273017 7SK 245 - 0 127 164178 82 8 7 38 chain 16109 chr1 249250621 + 212289025 212289237 MER30 238 - 0 238 138026 108 8 34 96 chain 21732 chr1 249250621 + 212293903 212294169 AluSp 311 + 11 286 121270 71 0 9 195 chain 9980 chr1 249250621 + 212297419 212297527 MLT2A1 477 + 0 108 160679 108 chain 61444 chr1 249250621 + 212309069 212310306 L1MA3 4352 + 2346 3259 52134 166 5 0 73 1 0 4 0 1 84 14 6 140 0 3 147 0 1 4 1 0 54 27 30 30 322 0 90 10 14 38 11 12 16 chain 23758 chr1 249250621 + 212323769 212324077 AluSc5 308 + 0 307 111721 123 1 0 13 15 15 156 chain 26505 chr1 249250621 + 212371315 212371625 AluY 311 + 0 308 98022 38 0 2 86 4 0 182 chain 29618 chr1 249250621 + 212388274 212388694 LTR21A 479 - 80 479 86148 6 2 0 134 0 3 174 29 0 16 0 1 4 14 20 41 chain 6240 chr1 249250621 + 212419177 212419253 L1MB5 1630 + 1397 1473 183244 76 chain 22476 chr1 249250621 + 212424665 212424947 AluSp 311 + 11 292 118131 41 0 5 229 6 0 6 chain 16748 chr1 249250621 + 212466258 212466458 MER107 203 + 0 203 136265 162 0 3 38 chain 104254 chr1 249250621 + 212471160 212472490 SVA_E 1901 - 0 1232 35674 324 1 0 611 2 0 39 3 0 84 0 1 21 1 0 8 1 0 9 48 39 30 0 3 11 88 3 49 chain 3351 chr1 249250621 + 212472264 212472312 SVA_E 1901 - 625 673 81559 48 chain 6073 chr1 249250621 + 212472353 212472440 SVA_E 1901 - 714 806 81559 33 8 13 46 chain 5026 chr1 249250621 + 212472490 212472562 SVA_E 1901 - 855 927 81559 31 1 0 32 0 1 8 chain 22358 chr1 249250621 + 212477635 212477908 AluSp 311 + 25 294 118673 116 0 1 145 5 0 7 chain 39381 chr1 249250621 + 212479264 212479773 LTR10D 510 - 0 510 70197 84 0 1 151 3 4 43 1 0 133 0 8 10 11 4 8 1 0 64 chain 14591 chr1 249250621 + 212483072 212483255 MER30B 195 - 8 195 142625 37 0 3 52 0 1 94 chain 21956 chr1 249250621 + 212484541 212484820 AluY 311 + 10 295 120400 14 0 3 105 0 1 38 6 5 42 0 3 74 chain 161898 chr1 249250621 + 212493292 212495586 SVA_D 2077 - 0 2077 23080 99 0 4 573 13 0 4 0 1 298 451 207 130 3 0 33 0 3 92 0 40 568 5 0 25 chain 28824 chr1 249250621 + 212494296 212494694 SVA_F 1814 - 523 843 89785 17 1 0 134 77 0 169 chain 6493 chr1 249250621 + 212494448 212494525 SVA_F 1814 - 723 801 117965 37 0 1 40 chain 21101 chr1 249250621 + 212563494 212563739 AluSc 308 + 10 255 123547 245 chain 540487 chr1 249250621 + 212563807 212569930 L1PA5 6144 + 3 6138 2735 1030 1 0 400 15 14 361 0 2 365 0 2 16 0 4 1653 1 2 98 0 1 1343 0 1 686 1 6 5 4 0 105 0 2 39 chain 16508 chr1 249250621 + 212590051 212590252 LTR26B 539 + 0 201 136892 201 chain 36895 chr1 249250621 + 212603285 212603736 LTR7C 471 - 22 471 73669 321 8 6 122 chain 23063 chr1 249250621 + 212616081 212616372 AluSg7 307 - 6 297 115336 150 1 2 17 1 0 122 chain 16033 chr1 249250621 + 212635033 212635332 L1PB1 5432 - 2 273 138270 10 2 0 15 2 1 13 1 0 21 1 0 24 9 7 8 1 0 4 2 0 30 14 1 16 1 0 43 1 0 16 2 1 50 3 1 10 chain 113202 chr1 249250621 + 212649018 212650366 L1PA6 6164 - 4 1355 33315 184 1 0 414 0 6 48 5 0 111 5 7 40 1 0 30 0 5 7 5 4 413 0 1 4 3 0 77 chain 8254 chr1 249250621 + 212690243 212690385 MER20 218 + 22 149 169659 10 15 0 42 6 5 8 0 1 61 chain 30100 chr1 249250621 + 212706579 212706971 MER51B 395 + 0 395 84499 245 1 0 88 1 5 57 chain 4170 chr1 249250621 + 212725374 212725423 U6 107 - 58 107 204970 49 chain 4834 chr1 249250621 + 212726700 212726794 MER34 540 - 461 540 196970 35 25 10 34 chain 49572 chr1 249250621 + 212766218 212766781 L1PA4 6152 + 5578 6140 59343 240 1 0 322 chain 28763 chr1 249250621 + 212772109 212772516 L1MA2 4263 - 158 554 90049 38 18 11 90 1 0 8 1 0 149 3 0 73 0 1 26 chain 4667 chr1 249250621 + 212775893 212776000 MIR 256 + 28 137 198889 20 37 39 50 chain 543289 chr1 249250621 + 212831367 212837520 L1PA4 6152 + 6 6143 2298 322 0 3 197 4 0 628 0 3 785 0 2 291 19 0 276 6 0 658 1 0 607 0 1 1519 0 4 226 0 2 288 1 0 325 chain 13403 chr1 249250621 + 212843579 212843779 MER2 342 + 85 289 146696 13 8 11 122 9 10 48 chain 21632 chr1 249250621 + 212880724 212881017 AluSp 311 + 11 302 121647 46 11 8 193 1 2 42 chain 3975 chr1 249250621 + 212891545 212891622 MADE1 96 + 2 96 207758 29 1 0 5 5 22 25 2 3 10 chain 24647 chr1 249250621 + 212893621 212893903 AluSp 311 + 11 292 106734 32 1 0 249 chain 136869 chr1 249250621 + 212897548 212899117 SVA_B 1603 + 0 1603 26669 8 9 0 14 3 1 19 12 5 687 0 19 89 0 36 43 4 0 26 0 1 655 chain 22601 chr1 249250621 + 212916506 212916782 AluSc 308 - 10 286 117582 276 chain 10937 chr1 249250621 + 212935218 212935357 MER30 238 - 2 164 156457 37 0 3 81 0 20 21 chain 253791 chr1 249250621 + 212936663 212941867 L1PB2 3958 + 115 3838 16041 23 2 0 37 16 9 46 3 0 69 1 5 111 0 3 48 0 1 191 0 3 362 0 3 105 0 4 71 1 6 38 11 0 88 0 5 26 320 6 192 13 12 18 1 0 194 0 1 192 3 1 5 0 2 31 1135 295 132 7 1 31 9 0 8 0 1 98 1 0 335 1 0 59 0 22 304 2 0 52 1 0 13 5 0 51 1 2 11 2 0 13 5 0 94 1 0 73 1 0 53 322 5 5 1 0 74 2 0 19 6 5 59 chain 170537 chr1 249250621 + 212951767 212953857 SVA_D 2077 + 61 2074 21991 606 0 37 164 12 11 29 6 0 8 3 39 31 0 2 46 2 4 144 98 0 206 0 1 4 58 8 673 chain 6715 chr1 249250621 + 212952818 212952916 SVA_D 2077 + 1309 1456 75901 26 27 76 45 chain 2538 chr1 249250621 + 212953126 212953171 SVA_D 2077 + 1343 1388 83956 45 chain 20874 chr1 249250621 + 212958687 212958941 L1PA5 6144 - 1 257 124381 10 1 3 243 chain 6557 chr1 249250621 + 212982218 212982439 L1MB7 1623 + 1366 1530 180796 4 1 0 52 1 0 7 17 7 6 8 0 9 4 1 19 5 7 13 41 8 19 3 0 12 chain 35613 chr1 249250621 + 212999276 212999810 LTR10A 586 - 0 538 75398 77 24 22 46 0 3 155 1 2 16 28 0 25 8 38 154 chain 11629 chr1 249250621 + 213017152 213017293 HERVH-int 3825 + 2672 2820 153781 121 0 7 20 chain 25831 chr1 249250621 + 213019724 213020148 LTR7B 505 + 0 505 100743 105 0 10 56 18 86 32 45 8 14 0 41 89 14 13 51 chain 5285 chr1 249250621 + 213020788 213020851 MER82 654 - 568 631 192159 63 chain 124998 chr1 249250621 + 213023399 213024789 L1P1 4361 - 33 1421 29393 23 1 0 154 1 0 1211 chain 30277 chr1 249250621 + 213024789 213025113 L1PA2 6032 + 5707 6031 84004 324 chain 22931 chr1 249250621 + 213029188 213029470 AluSx4 309 + 9 291 115960 109 4 0 155 1 5 13 chain 20182 chr1 249250621 + 213038487 213038720 L1PA4 6152 - 9 248 126586 6 0 5 93 0 1 134 chain 22447 chr1 249250621 + 213050347 213051074 L1PA11 4918 - 414 743 118267 16 1 0 14 2 0 68 1 0 12 400 12 68 0 4 23 1 0 78 10 1 33 chain 6577 chr1 249250621 + 213067458 213067546 Tigger1 2417 + 2251 2338 180642 28 2 0 33 0 1 25 chain 5187 chr1 249250621 + 213074799 213074938 L1M3c 1411 + 1133 1258 193170 16 16 6 32 11 12 20 3 0 12 9 7 20 chain 32059 chr1 249250621 + 213081652 213082063 LTR7 482 - 0 482 80758 192 0 32 33 0 1 109 8 46 69 chain 40020 chr1 249250621 + 213083349 213083787 LTR7 482 + 0 469 69290 260 0 31 178 chain 222527 chr1 249250621 + 213083816 213086533 HERVH-int 3825 + 459 3474 17730 16 0 57 38 1 0 10 1 0 24 29 0 12 3 40 42 2 1 57 0 1 6 0 2 13 0 3 442 15 0 462 4 31 390 0 2 50 0 4 73 1 0 857 0 3 25 37 247 107 chain 44550 chr1 249250621 + 213087541 213088023 LTR7 482 + 0 482 63524 482 chain 7196 chr1 249250621 + 213191101 213191272 MER82 654 + 446 643 176092 26 2 3 25 59 84 59 chain 46436 chr1 249250621 + 213198830 213199334 MER9a1 513 - 9 513 61650 504 chain 391048 chr1 249250621 + 213199334 213203982 HERVK9-int 4720 - 0 4684 10421 173 0 34 68 0 1 122 21 23 60 0 3 909 12 13 840 0 2 217 1 0 668 0 2 224 1 0 350 7 6 235 1 2 602 9 8 26 1 0 8 1 0 66 1 0 4 8 5 13 chain 43800 chr1 249250621 + 213205273 213205783 MER9a1 513 - 0 513 64448 66 1 3 27 0 1 416 chain 29568 chr1 249250621 + 213211933 213212243 AluYf4 310 - 0 310 86347 310 chain 46359 chr1 249250621 + 213218458 213219005 LTR14 556 - 2 551 61721 298 0 1 22 1 2 226 chain 41506 chr1 249250621 + 213219006 213219502 LTR14 556 - 58 556 67273 265 1 2 177 0 1 53 chain 21569 chr1 249250621 + 213225886 213226173 AluSp 311 - 16 301 121887 144 21 19 122 chain 9377 chr1 249250621 + 213240651 213240765 LOR1b 457 - 305 418 163666 60 1 0 53 chain 5710 chr1 249250621 + 213243035 213243102 MER41B 635 - 86 154 188016 37 0 1 30 chain 401644 chr1 249250621 + 213285909 213290333 L1PA3long 6157 - 1 4441 10038 384 0 2 462 0 4 946 0 4 385 0 4 1033 1 2 658 0 1 555 chain 240344 chr1 249250621 + 213320382 213327178 L1MA1 4479 - 307 4091 16751 13 5 2 6 1 0 9 3 2 12 0 4 17 2 0 29 6 5 78 1 0 28 24 20 62 1 0 26 1 0 14 2 0 12 8 7 71 1 0 16 2 0 25 1 0 192 5 4 129 3 0 19 6 5 54 35 30 18 5 0 12 1 0 76 3 0 18 6 7 108 0 12 45 2 0 47 8 11 62 1 0 62 6 5 27 7 5 41 1 0 17 0 1 39 2 1 54 12 9 76 0 3 87 5 6 247 9 11 85 1 3 10 1 2 29 0 4 58 0 13 131 11 17 142 1 0 171 2 1 41 0 3 66 22 21 118 20 21 143 0 2 5 1 3 49 1 5 38 1 6 40 0 13 29 0 1 5 3066 3 43 0 1 43 0 3 86 1 7 31 0 9 64 0 1 153 8 11 52 1 0 4 chain 84765 chr1 249250621 + 213323678 213324646 SVA_D 2077 - 21 1290 41609 601 1 0 32 0 49 27 1 0 149 0 78 33 0 51 75 0 122 38 0 3 11 chain 12135 chr1 249250621 + 213324704 213324959 SVA_F 1814 - 523 826 73817 17 1 0 60 0 49 177 chain 108931 chr1 249250621 + 213324960 213326571 SVA_F 1814 - 525 1814 34455 15 1 0 90 103 0 26 49 0 196 174 14 93 39 30 825 chain 4902 chr1 249250621 + 213325066 213325169 SVA_F 1814 - 870 919 73817 7 54 0 42 chain 3334 chr1 249250621 + 213325073 213325112 SVA_F 1814 - 686 721 181937 9 4 0 26 chain 1761 chr1 249250621 + 213325440 213325477 SVA_F 1814 - 1278 1318 73817 19 7 10 11 chain 11879 chr1 249250621 + 213325477 213325611 SVA_F 1814 - 586 721 134119 51 0 1 83 chain 29185 chr1 249250621 + 213333975 213334348 L1PA6 6164 + 5790 6162 88119 6 3 0 81 0 1 164 9 10 110 chain 38741 chr1 249250621 + 213370487 213371075 L1PB1 5432 - 1315 1881 71089 150 6 5 223 52 29 53 11 13 93 chain 99752 chr1 249250621 + 213372250 213373645 L1PA13 3608 + 2142 3518 36841 96 9 0 44 0 1 179 1 2 118 6 2 27 1 0 102 0 1 201 0 4 24 3 10 175 1 0 32 1 0 114 2 0 35 0 2 25 1 0 56 7 4 47 9 5 17 1 0 27 20 12 14 chain 15919 chr1 249250621 + 213379164 213379382 Tigger4a 237 - 22 237 138611 34 14 11 170 chain 531091 chr1 249250621 + 213387243 213393353 L1PA4 6152 + 10 6144 4071 895 1 0 139 5 4 1121 0 1 216 0 4 38 0 3 1680 16 15 224 1 5 632 3 7 83 0 5 217 3 7 591 0 1 29 1 2 215 chain 14723 chr1 249250621 + 213396928 213397153 L1PB2 3958 - 120 341 142188 47 22 21 18 3 1 69 2 1 64 chain 18076 chr1 249250621 + 213409353 213409611 MER1B 344 + 95 344 132657 164 37 28 57 chain 13509 chr1 249250621 + 213429778 213429952 MER30 238 - 0 187 146330 63 0 2 49 5 16 57 chain 28473 chr1 249250621 + 213444826 213445126 AluYg6 310 + 0 300 91294 300 chain 11664 chr1 249250621 + 213463383 213463511 AluYk11 308 + 177 305 153627 128 chain 20584 chr1 249250621 + 213465370 213465603 L1PA3long 6157 + 5924 6157 125349 233 chain 28483 chr1 249250621 + 213477266 213477572 AluYa5 310 + 0 305 91251 132 1 0 173 chain 24010 chr1 249250621 + 213480403 213480693 AluYc3 301 - 10 301 110271 176 1 2 113 chain 19188 chr1 249250621 + 213491883 213492218 THE1B 368 - 0 368 129565 18 36 44 37 9 20 77 7 6 111 10 25 30 chain 13750 chr1 249250621 + 213516790 213517128 L1PB1 5432 + 5114 5422 145440 24 1 0 4 3 2 14 4 0 10 2 0 37 1 2 5 1 0 6 2 1 18 1 0 42 1 0 13 75 59 19 1 0 20 2 1 13 1 0 18 chain 323981 chr1 249250621 + 213531278 213535024 L1P1 4361 - 518 4357 12439 339 0 1 438 0 78 961 1 0 65 0 1 905 9 8 610 0 1 301 6 20 111 chain 3474 chr1 249250621 + 213577440 213577675 LTR16A1 462 - 158 415 215769 11 2 3 13 29 28 23 130 152 27 chain 6171 chr1 249250621 + 213582554 213582634 MADE1 96 + 0 96 183791 29 0 16 51 chain 199297 chr1 249250621 + 213631918 213634346 L1PA7 6471 - 1966 4418 19261 296 0 2 40 0 3 335 1 0 111 0 11 121 0 5 32 1 5 14 2 1 43 3 2 115 0 1 156 0 1 111 12 16 185 6 10 53 0 2 193 9 0 377 1 0 211 chain 157618 chr1 249250621 + 213634346 213636251 L1PA7 6471 + 4524 6467 23587 1 0 1 89 0 1 51 0 4 313 0 3 237 0 4 79 0 5 37 0 1 270 0 7 48 0 3 9 5 7 261 0 1 30 1 4 228 9 13 101 1 0 135 chain 19549 chr1 249250621 + 213656439 213656689 THE1C 375 - 110 366 128519 124 1 5 70 0 2 55 chain 340301 chr1 249250621 + 213687583 213691394 L1PA4 6152 - 9 3825 11891 243 0 1 417 0 1 1192 0 1 603 0 3 505 1 0 850 chain 25777 chr1 249250621 + 213701453 213701825 THE1C 375 - 0 375 100978 25 1 0 122 0 1 6 17 18 112 13 0 8 0 14 33 0 1 35 chain 8805 chr1 249250621 + 213703416 213703509 L1PA4 6152 - 20 113 166619 93 chain 12690 chr1 249250621 + 213718813 213719060 MLT1C 463 - 202 460 149486 17 4 36 11 27 1 59 12 13 75 1 0 14 3 8 24 chain 26927 chr1 249250621 + 213748731 213749057 THE1C 375 + 0 364 96526 53 0 42 30 3 0 225 1 0 14 chain 18131 chr1 249250621 + 213757286 213757653 THE1B 368 + 0 368 132516 107 106 107 14 6 14 41 7 0 25 1 0 60 chain 504124 chr1 249250621 + 213798782 213804699 L1PA4 6152 - 9 6149 6591 835 0 4 566 0 1 55 0 1 4 1 0 322 0 4 885 0 2 332 0 2 21 163 0 1559 0 1 94 0 4 394 1 3 50 0 1 268 0 365 367 chain 10397 chr1 249250621 + 213801832 213801957 L1PA4 6152 - 11 136 158708 125 chain 382238 chr1 249250621 + 213805630 213810143 L1P2 5180 + 2 5178 10689 86 0 729 1235 0 1 266 31 0 852 43 0 121 0 1 518 0 4 448 0 1 463 0 4 64 1 0 75 1 2 219 1 0 45 1 0 38 1 0 4 chain 11633 chr1 249250621 + 213810769 213810918 L1PA6 6164 + 6015 6162 153759 141 2 0 6 chain 12785 chr1 249250621 + 213848691 213848857 L1PA16 3655 - 981 1143 149116 91 4 0 71 chain 9506 chr1 249250621 + 213865343 213865460 MER50 708 - 27 144 163040 117 chain 5625 chr1 249250621 + 213871442 213871512 Tigger5 388 + 302 372 188834 70 chain 29295 chr1 249250621 + 213877448 213877755 AluYf4 310 + 0 307 87598 307 chain 517324 chr1 249250621 + 213879917 213886311 L1PA7 6471 - 25 6468 5443 831 0 1 140 0 5 76 0 1 444 0 1 124 0 2 150 0 2 29 0 1 105 2 0 3 12 0 561 0 1 324 0 1 141 2 0 80 0 33 491 6 10 256 0 1 126 1 2 243 1 0 378 6 7 73 3 10 1381 0 2 108 2 3 211 0 1 84 chain 17424 chr1 249250621 + 213904474 213904756 L1PA13 3608 - 120 395 134451 20 1 0 20 2 0 5 2 0 47 2 1 56 4 3 13 0 1 38 22 21 50 chain 14562 chr1 249250621 + 213977282 213977454 L1PA5 6144 + 5962 6134 142701 172 chain 210804 chr1 249250621 + 213979777 213982268 L1P1 4361 - 1873 4360 18447 1237 26 27 43 0 3 454 1 0 17 12 5 128 1 0 257 0 1 315 chain 5175 chr1 249250621 + 214059106 214059297 MLT1D 503 - 8 227 193289 35 113 141 43 chain 15459 chr1 249250621 + 214096180 214096344 L1PA2 6032 - 5 169 140022 164 chain 35374 chr1 249250621 + 214096364 214096746 L1PA2 6032 + 5469 5851 75700 382 chain 27112 chr1 249250621 + 214100252 214100627 L1PA8 5853 + 5483 5853 95892 81 1 0 44 2 0 68 0 1 5 18 16 25 0 1 16 2 1 19 1 0 93 chain 41496 chr1 249250621 + 214138383 214138879 L1PA7 6471 - 4 501 67282 76 0 1 420 chain 25344 chr1 249250621 + 214199006 214199304 AluSg7 307 - 10 307 102991 171 1 0 126 chain 4097 chr1 249250621 + 214219700 214219745 MER30 238 + 193 238 205987 45 chain 41121 chr1 249250621 + 214220885 214221394 L1PA10 4194 + 3662 4161 67749 337 6 0 117 3 0 34 1 0 11 chain 4945 chr1 249250621 + 214257951 214258005 MLT2A2 560 + 506 560 195755 54 chain 83190 chr1 249250621 + 214263119 214264339 L1PA14 3548 - 83 1277 42255 10 6 0 19 1 0 22 1 0 14 3 2 6 1 0 14 4 2 33 4 0 7 5 4 87 1 8 16 1 0 90 2 0 13 8 4 103 0 1 5 8 4 48 19 15 250 1 0 152 10 9 256 chain 8726 chr1 249250621 + 214285985 214286121 MER33 330 + 147 286 167056 11 2 0 53 1 3 27 4 0 7 0 7 31 chain 9994 chr1 249250621 + 214286412 214286636 L1PB1 5432 - 33 235 160612 7 1 0 13 10 9 24 2 0 13 10 7 18 17 6 6 1 0 15 1 0 45 1 0 15 2 1 23 chain 4808 chr1 249250621 + 214308491 214308563 L1MD2 1676 - 1180 1253 197253 38 3 4 31 chain 46469 chr1 249250621 + 214317689 214318261 LTR10C 591 - 0 591 61623 20 20 21 39 0 1 30 0 17 463 chain 29757 chr1 249250621 + 214333013 214333448 MER4A1 472 + 0 437 85625 22 1 2 48 2 3 160 22 1 11 0 21 62 6 7 4 1 0 96 chain 22283 chr1 249250621 + 214336701 214336958 AluSg 306 + 10 267 118985 257 chain 33069 chr1 249250621 + 214419479 214419932 MLT2A1 477 - 0 477 79098 41 28 43 8 0 5 56 1 0 150 1 5 26 0 1 142 chain 23989 chr1 249250621 + 214439916 214440224 AluSc5 308 - 0 308 110387 157 1 4 6 3 0 141 chain 59040 chr1 249250621 + 214448611 214449389 LTR12 884 - 15 884 53371 138 12 13 173 15 17 138 0 22 27 0 1 45 0 91 128 25 0 52 1 0 24 chain 2116 chr1 249250621 + 214449287 214449312 LTR12 884 - 610 635 168487 25 chain 11675 chr1 249250621 + 214459122 214459370 Tigger3a 397 - 78 377 153582 18 25 0 6 5 0 12 0 30 112 54 105 16 chain 24350 chr1 249250621 + 214467029 214467318 AluSp 311 - 22 311 108372 289 chain 96633 chr1 249250621 + 214471222 214472953 L1PA16 3655 + 2070 3517 37660 116 6 5 48 1 0 139 0 1 70 12 21 7 9 0 169 1 4 25 1 0 12 4 5 26 0 6 13 0 1 130 17 21 14 1 0 14 1 0 10 0 25 28 0 2 108 315 0 111 1 0 89 3 1 82 16 8 97 8 12 27 chain 24891 chr1 249250621 + 214499310 214499599 AluSg 306 + 10 299 105402 289 chain 35247 chr1 249250621 + 214552882 214553332 MER4A1 472 + 0 472 75865 15 0 2 7 0 2 46 0 1 95 0 2 104 7 22 176 chain 21606 chr1 249250621 + 214575506 214575802 AluSz 310 + 8 304 121747 130 19 17 121 0 2 26 chain 30348 chr1 249250621 + 214608887 214609457 L1PA15 4387 + 3812 4365 83780 15 4 0 36 1 5 22 2 0 43 1 0 29 18 14 38 1 19 46 9 0 25 1 0 27 2 1 53 8 7 20 10 5 42 14 11 44 3 1 13 6 1 27 1 0 9 chain 28361 chr1 249250621 + 214622348 214622648 AluYk12 309 - 9 309 91730 300 chain 22897 chr1 249250621 + 214669064 214669327 AluSp 311 - 39 301 116121 219 1 0 43 chain 29636 chr1 249250621 + 214682995 214683329 L1PA6 6164 + 5669 6003 86108 334 chain 12758 chr1 249250621 + 214696746 214696897 Tigger3a 397 + 158 309 149222 151 chain 25637 chr1 249250621 + 214706900 214707221 AluY 311 + 8 311 101550 119 5 0 176 13 0 8 chain 23337 chr1 249250621 + 214748774 214749050 AluSp 311 + 10 286 113995 276 chain 18957 chr1 249250621 + 214749365 214749713 THE1A 353 + 7 353 130209 6 2 0 34 9 10 24 14 13 13 41 45 58 6 0 23 0 1 28 0 1 90 chain 23258 chr1 249250621 + 214751249 214751604 THE1A 353 + 0 353 114398 12 3 1 34 7 8 41 33 32 225 chain 12153 chr1 249250621 + 214758109 214758265 Tigger2b_Pri 1066 + 844 999 151599 7 0 2 20 3 0 126 chain 23140 chr1 249250621 + 214769267 214769575 AluYk4 311 + 11 307 114940 113 33 19 136 0 2 26 chain 93040 chr1 249250621 + 214783865 214785869 L1PREC2 3366 - 117 1691 38647 8 12 0 3 1 0 18 10 5 17 224 139 11 2 0 38 8 6 33 19 8 11 4 1 29 3 1 15 12 8 10 29 21 12 3 0 5 1 0 43 2 1 54 8 6 167 0 4 4 0 1 23 304 0 55 1 0 4 0 1 104 1 0 217 0 7 13 2 0 138 1 0 8 0 1 10 0 5 143 15 13 5 0 2 17 0 3 122 1 0 4 chain 17415 chr1 249250621 + 214796567 214796826 MER2 342 + 87 342 134466 22 1 0 7 1 0 22 1 0 4 13 12 188 chain 8778 chr1 249250621 + 214799304 214799551 L1MDa 1598 - 223 438 166772 25 99 65 53 13 15 57 chain 48154 chr1 249250621 + 214840684 214841403 L1PA16 3655 + 2914 3619 60360 8 1 0 4 0 7 49 0 2 95 14 16 107 3 0 88 2 0 191 6 12 86 3 0 14 27 5 21 chain 123988 chr1 249250621 + 214845625 214847054 LTR12C 1709 - 0 1709 29707 84 1 0 184 0 1 212 0 4 106 3 160 110 0 118 240 0 1 489 chain 71269 chr1 249250621 + 214848552 214849370 L1PA5 6144 + 5303 6124 47818 139 2 1 553 0 4 124 chain 36994 chr1 249250621 + 214860411 214860938 MLT2A2 560 - 0 560 73517 9 0 1 38 5 0 95 0 11 196 13 16 22 17 40 132 chain 10580 chr1 249250621 + 214871930 214872259 Tigger1 2417 + 2037 2374 157912 35 7 6 33 3 0 5 5 8 62 144 153 35 chain 3536 chr1 249250621 + 214876164 214876207 Tigger3b 1229 - 0 43 214773 43 chain 82902 chr1 249250621 + 214877574 214878818 L1MA1 4479 - 315 1882 42378 13 1 0 9 1 0 37 2 0 27 1 0 126 10 6 87 1 0 13 1 0 16 9 8 52 0 1 14 1 0 13 5 3 25 1 0 19 1 0 139 0 1 41 0 4 122 3 0 72 3 331 27 1 0 5 38 39 48 1 0 4 2 0 58 1 0 33 2 0 70 0 16 17 2 1 70 chain 19411 chr1 249250621 + 214880498 214880817 THE1C 375 + 2 350 128918 118 3 0 43 28 34 42 6 0 8 9 41 62 chain 38222 chr1 249250621 + 214884375 214884820 L1PA7 6471 - 1 441 71812 336 7 2 102 chain 526809 chr1 249250621 + 214895038 214901444 L1PA7 6471 - 1 6471 4520 683 1 2 81 0 1 88 0 1 434 0 1 200 1 0 970 1 0 456 0 4 211 1 10 63 0 1 68 0 1 562 0 1 111 0 2 682 0 1 926 0 21 133 0 12 13 8 9 66 1 0 4 0 2 35 0 1 205 5 6 153 0 10 26 0 2 5 2 0 106 10 6 95 chain 4452 chr1 249250621 + 214908079 214908204 MER5A1 166 - 28 154 201329 42 58 59 25 chain 34389 chr1 249250621 + 214912015 214912502 MER1A 529 - 14 499 77077 56 4 1 17 12 13 331 4 15 7 11 0 45 chain 13728 chr1 249250621 + 214923272 214923426 L1PA4 6152 + 5993 6152 145510 148 0 5 6 chain 11940 chr1 249250621 + 214943150 214943291 L1PA7 6471 + 6077 6218 152444 141 chain 10437 chr1 249250621 + 214947546 214947674 L1PA5 6144 - 1 122 158537 22 7 0 99 chain 71378 chr1 249250621 + 214949064 214949867 L1PA4 6152 + 5343 6152 47755 343 0 6 460 chain 300715 chr1 249250621 + 214955104 214958639 L1PA6 6164 + 2610 6147 13384 559 2 0 662 4 0 129 0 1 328 0 4 410 0 1 190 3 4 263 8 0 157 0 4 166 1 0 291 0 7 216 2 1 144 chain 38612 chr1 249250621 + 214959315 214959786 L1PA6 6164 - 2 475 71278 8 2 0 199 0 3 120 0 1 142 chain 15274 chr1 249250621 + 214991027 214991245 MER30 238 + 0 231 140557 102 2 0 5 4 0 7 2 24 61 3 0 32 chain 3030 chr1 249250621 + 215000205 215000286 MER51A 677 - 445 497 224377 33 36 7 12 chain 46240 chr1 249250621 + 215032872 215033473 LTR66 600 - 21 600 61820 105 17 0 55 9 6 13 2 0 400 chain 14102 chr1 249250621 + 215039436 215039856 MSTA 426 - 15 399 144209 115 234 198 71 chain 135510 chr1 249250621 + 215041937 215043759 SVA_F 1814 - 0 1479 26924 10 2 0 591 51 0 185 78 0 65 226 15 60 1 0 553 chain 4070 chr1 249250621 + 215042540 215042591 SVA_F 1814 - 777 826 110207 26 1 0 10 1 0 13 chain 6680 chr1 249250621 + 215042784 215042854 SVA_F 1814 - 540 610 148699 70 chain 13842 chr1 249250621 + 215042943 215043093 SVA_F 1814 - 698 848 145093 150 chain 4176 chr1 249250621 + 215043093 215043142 SVA_F 1814 - 799 848 184119 49 chain 107106 chr1 249250621 + 215052225 215053426 L1PA4 6152 - 687 1893 34941 157 0 4 608 0 1 436 chain 59078 chr1 249250621 + 215053435 215054111 L1PA4 6152 + 5469 6143 53347 397 0 3 135 5 0 139 chain 4532 chr1 249250621 + 215062907 215062978 MADE1 96 - 0 96 200431 17 0 1 4 5 29 45 chain 69615 chr1 249250621 + 215065331 215066429 L1MA1 4479 + 3143 4190 48567 13 2 0 19 4 0 76 1 0 14 4 0 124 3 0 81 5 10 39 2 0 195 1 0 25 2 0 16 1 0 11 0 1 42 34 31 19 1 0 70 1 0 16 2 1 6 3 0 43 2 0 66 0 1 7 24 11 26 3 1 35 1 0 9 0 1 6 7 2 12 7 0 18 chain 160645 chr1 249250621 + 215102937 215104692 L1PA3long 6157 - 15 1769 23244 133 1 0 1621 chain 15275 chr1 249250621 + 215104692 215104870 L1P1 4361 + 4049 4226 139791 102 2 1 74 chain 13185 chr1 249250621 + 215105833 215105988 L1PA7 6471 - 6 162 147526 7 0 1 148 chain 11802 chr1 249250621 + 215132309 215132571 L1PB1 5432 - 23 262 153033 5 1 0 13 1 0 21 1 0 16 32 27 16 9 0 14 4 1 15 1 0 44 22 20 47 chain 116640 chr1 249250621 + 215157402 215159259 THE1A-int 1579 + 0 1574 32250 130 2 1 220 0 1 150 1 0 148 0 3 27 0 10 169 1 2 33 0 10 139 6 7 42 11 19 169 0 1 116 0 1 69 0 1 36 330 12 58 chain 3376 chr1 249250621 + 215191780 215191860 L1MC5 759 + 104 186 217549 18 27 29 35 chain 2916 chr1 249250621 + 215220773 215220805 MIRb 242 - 140 172 226757 32 chain 24810 chr1 249250621 + 215239315 215239614 L1PA7 6471 + 6167 6466 105835 299 chain 12266 chr1 249250621 + 215251358 215251549 MER30 238 - 0 207 151128 49 3 0 8 0 1 46 9 0 7 5 32 64 chain 23242 chr1 249250621 + 215263158 215263457 AluSp 311 - 6 300 114480 23 11 6 265 chain 9853 chr1 249250621 + 215281873 215281995 L1MB1 2102 - 850 972 161327 122 chain 18082 chr1 249250621 + 215298878 215299078 L1PA5 6144 + 5931 6131 132643 200 chain 101285 chr1 249250621 + 215326990 215328299 L1PA8A 6298 - 7 1334 36446 86 2 1 109 0 3 92 1 0 12 12 13 173 11 10 68 1 2 194 0 11 19 6 9 410 0 1 7 7 8 99 chain 271999 chr1 249250621 + 215334764 215338016 L1PA7 6471 - 1 3259 15083 152 8 0 118 0 1 336 0 3 6 3 0 42 0 3 102 1 0 4 0 1 85 0 3 503 4 0 91 11 8 340 0 4 15 0 6 637 7 6 24 0 1 434 0 4 329 chain 73486 chr1 249250621 + 215341219 215342210 L1PA8 5853 + 4850 5853 46791 103 0 2 51 7 12 183 0 9 110 4 5 239 1 0 46 2 0 68 17 13 6 0 4 39 2 1 19 1 0 93 chain 199941 chr1 249250621 + 215346328 215348565 L1PA5 6144 - 6 2255 19217 56 0 8 1721 1 5 459 chain 26027 chr1 249250621 + 215357796 215358157 THE1C 375 - 0 375 99907 26 1 0 133 26 42 161 1 0 13 chain 23621 chr1 249250621 + 215377135 215377409 AluY 311 + 36 311 112462 90 0 1 184 chain 4632 chr1 249250621 + 215417771 215417863 MER20 218 - 98 189 199277 32 15 19 30 1 0 4 4 0 6 chain 14758 chr1 249250621 + 215421335 215421586 L1PA8 5853 - 0 254 142074 21 0 1 7 6 14 50 1 0 19 2 1 28 11 0 9 6 16 8 1 0 71 2 0 9 chain 39391 chr1 249250621 + 215423566 215424020 L1PA4 6152 - 9 463 70177 454 chain 89113 chr1 249250621 + 215432919 215433978 L1PA7 6471 - 4 1065 39960 9 2 0 179 0 2 337 0 1 224 3 6 87 2 0 216 chain 8594 chr1 249250621 + 215445601 215445706 L1MA5A 2387 + 1927 2032 167760 105 chain 45693 chr1 249250621 + 215475113 215475682 L1PA7 6471 + 5897 6468 62321 62 2 0 5 0 2 10 2 0 132 1 2 21 0 1 321 0 2 13 chain 30169 chr1 249250621 + 215490740 215491112 L1PA5 6144 - 0 380 84277 27 1 0 10 0 9 100 3 1 6 0 2 225 chain 245831 chr1 249250621 + 215536324 215539346 L1P2 5180 - 2082 5115 16461 274 1 0 42 5 10 456 8 0 108 0 2 1265 0 6 17 0 4 121 1 0 6 1 0 256 1 2 14 1 0 8 1 0 260 1 0 97 1 0 26 0 8 51 chain 69082 chr1 249250621 + 215543591 215544434 L1PA8A 6298 - 8 856 48771 92 1 0 4 11 12 612 0 2 77 0 3 46 chain 17500 chr1 249250621 + 215559310 215559666 THE1B 368 - 0 362 134268 56 7 6 51 72 78 53 33 34 84 chain 8035 chr1 249250621 + 215567475 215567965 LTR12D 1347 - 59 887 170837 27 19 13 11 75 52 51 159 382 13 85 229 50 chain 37385 chr1 249250621 + 215583468 215583906 LTR7 482 - 9 482 72978 89 8 10 65 0 1 13 0 31 38 0 1 225 chain 277485 chr1 249250621 + 215585057 215588575 HERVH-int 3825 - 77 3825 14777 410 8 218 31 0 3 5 9 11 244 63 62 13 2 1 4 0 1 395 0 4 8 3 2 620 8 35 239 0 1 218 15 0 444 1 0 49 2 1 7 0 20 46 1 0 4 27 4 17 24 0 12 1 0 15 28 0 24 1 0 10 1 0 30 0 56 239 0 5 240 chain 39966 chr1 249250621 + 215588577 215589026 LTR7 482 - 0 482 69370 98 0 2 87 0 31 264 chain 487007 chr1 249250621 + 215600496 215606528 L1PA7 6471 - 8 6059 7482 6 5 0 664 1 0 172 2 1 406 20 22 199 9 8 150 4 0 385 5 6 30 0 1 314 0 1 475 1 2 4 1 0 10 0 1 238 0 1 727 1 2 49 0 1 109 9 10 684 0 1 512 0 19 350 15 15 141 0 5 165 3 0 100 5 4 61 chain 3804 chr1 249250621 + 215615315 215615358 L1PA13 3608 + 1404 1447 210331 43 chain 34034 chr1 249250621 + 215624453 215624854 L1P2 5180 - 3186 3588 77571 100 0 1 301 chain 40637 chr1 249250621 + 215654725 215655216 MER9a1 513 + 0 513 68387 18 0 1 4 1 0 221 1 23 246 chain 115954 chr1 249250621 + 215665220 215666727 THE1B-int 1605 + 62 1605 32474 294 0 1 73 0 25 226 0 1 80 4 5 11 11 6 190 5 6 50 0 15 364 6 0 84 1 3 98 1 2 9 chain 25732 chr1 249250621 + 215666727 215667083 THE1B 368 + 0 368 101157 44 0 15 110 1 0 17 7 6 94 8 7 75 chain 36259 chr1 249250621 + 215683306 215683773 L1PA7 6471 + 5998 6467 74550 12 0 2 143 0 1 98 5 6 166 0 1 30 3 0 10 chain 514909 chr1 249250621 + 215705544 215711700 L1PA5 6144 + 4 6132 5681 125 0 14 107 43 6 914 9 0 671 0 1 41 0 1 365 2 0 65 0 1 776 0 4 69 2 0 12 1 0 26 1 0 473 2 0 67 7 8 817 0 1 59 0 1 82 5 7 577 1 0 617 5 6 36 9 9 170 chain 8533 chr1 249250621 + 215739268 215739365 MER30 238 + 138 235 168117 97 chain 15495 chr1 249250621 + 215827517 215827712 L1PA6 6164 - 2 198 139914 148 1 2 46 chain 19863 chr1 249250621 + 215840788 215841068 AluSg7 307 + 30 298 127611 102 13 11 29 0 1 114 11 0 11 chain 526627 chr1 249250621 + 215871171 215877611 L1PA7 6471 - 1 6468 4532 457 0 4 292 0 1 95 1 0 309 0 5 396 0 1 108 2 1 127 1 5 61 0 9 1495 0 4 149 22 8 309 0 2 140 0 1 221 2 0 527 12 17 108 0 5 52 2 0 165 3 6 74 1 2 499 10 11 392 1 0 259 11 13 137 chain 2095 chr1 249250621 + 215878544 215878581 Kanga1d 558 - 100 138 237672 12 4 5 21 chain 12387 chr1 249250621 + 215881824 215882127 MER1B 344 - 6 280 150683 52 14 20 46 4 0 61 25 28 9 35 0 4 3 0 15 22 26 13 chain 24781 chr1 249250621 + 215921233 215921494 AluYb8 318 - 19 280 105991 261 chain 6427 chr1 249250621 + 215926069 215926138 L1PA4 6152 - 1037 1106 181807 69 chain 92247 chr1 249250621 + 215926138 215927155 L1PA4 6152 + 5126 6143 38892 1017 chain 10749 chr1 249250621 + 215927917 215928088 MER30 238 - 5 201 157205 41 3 0 58 20 48 49 chain 6018 chr1 249250621 + 215958884 215958949 L1PA5 6144 + 6016 6081 185068 65 chain 5267 chr1 249250621 + 215958949 215959006 L1PA5 6144 + 6083 6140 192339 57 chain 207245 chr1 249250621 + 215976316 215978628 L1PA4 6152 + 3830 6143 18700 1470 0 1 842 chain 249190 chr1 249250621 + 216023920 216030516 L1PB1 5432 + 1849 5392 16300 398 0 1 250 7 0 20 9 10 35 1 0 151 0 9 283 0 1 346 0 3 21 2301 0 66 651 10 71 0 7 3 7 0 38 18 0 160 2 0 93 0 4 80 41 0 53 0 2 77 5 0 6 6 11 489 9 0 7 0 9 63 3 0 57 16 4 26 0 1 145 0 2 140 0 1 92 107 76 50 2 1 16 1 0 44 1 0 11 17 6 10 4 3 13 2 0 8 1 0 14 2 0 22 2 1 23 chain 26351 chr1 249250621 + 216025446 216025805 THE1B 368 - 0 368 98612 125 36 46 28 1 0 169 chain 114606 chr1 249250621 + 216025810 216027361 THE1B-int 1605 - 6 1580 32921 271 2 1 181 0 4 7 0 1 99 56 58 14 6 7 390 9 0 110 1 26 405 chain 8642 chr1 249250621 + 216027386 216027509 THE1B 368 - 0 125 167532 66 10 12 47 chain 15508 chr1 249250621 + 216027516 216027742 THE1B 368 - 140 368 139864 14 14 16 29 1 0 59 6 7 103 chain 28371 chr1 249250621 + 216035596 216035918 L1PA5 6144 + 5824 6142 91692 311 4 0 7 chain 21826 chr1 249250621 + 216057265 216057576 L1PA8 5853 + 5564 5853 120917 44 18 0 70 2 1 9 2 1 51 2 1 24 1 0 88 chain 53636 chr1 249250621 + 216088942 216089539 L1PA3long 6157 + 5560 6157 56598 597 chain 4405 chr1 249250621 + 216113331 216113396 Eulor8 236 + 164 225 201882 50 2 0 5 2 0 6 chain 146593 chr1 249250621 + 216124255 216126228 L1P1 4361 - 1078 2725 25048 112 1 0 811 326 0 157 0 1 566 chain 29449 chr1 249250621 + 216125187 216125505 AluYb8 318 - 0 318 86855 318 chain 165935 chr1 249250621 + 216126228 216128067 L1PA4 6152 + 4311 6152 22523 354 1 0 125 1 3 151 0 1 1207 chain 20164 chr1 249250621 + 216180250 216180601 THE1B 368 + 0 357 126629 111 0 3 6 4 3 43 51 48 18 0 8 66 16 15 36 chain 31489 chr1 249250621 + 216181484 216181895 LTR7 482 + 0 482 81659 69 8 46 109 0 1 33 6 38 186 chain 277484 chr1 249250621 + 216181897 216185546 HERVH-int 3825 + 0 3824 14778 212 0 11 117 0 1 53 0 121 15 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 6 14 8 15 1 0 11 25 22 4 1 0 27 2 0 15 2 1 18 13 13 49 1 0 58 0 3 334 8 0 52 15 0 266 6 7 186 4 31 295 0 10 911 5 8 130 9 11 39 8 218 120 0 1 139 0 2 158 172 0 66 chain 15821 chr1 249250621 + 216185313 216185479 AluYb9 318 - 4 170 138889 166 chain 30502 chr1 249250621 + 216186800 216187203 LTR7 482 + 0 474 83421 69 8 46 109 0 1 33 6 38 178 chain 19801 chr1 249250621 + 216188917 216189137 L1PA5 6144 - 556 776 127811 220 chain 46459 chr1 249250621 + 216189137 216189680 L1PA5 6144 + 5586 6129 61631 543 chain 13664 chr1 249250621 + 216219418 216219594 MER2 342 - 25 201 145728 176 chain 4738 chr1 249250621 + 216225605 216225667 UCON6 117 - 11 73 198048 62 chain 24927 chr1 249250621 + 216240448 216240768 L1PA7 6471 + 6155 6470 105179 154 18 13 148 chain 23827 chr1 249250621 + 216266312 216266602 AluSg7 307 - 14 305 111325 161 1 2 128 chain 35423 chr1 249250621 + 216277422 216277818 L1PA4 6152 - 12 409 75649 101 0 1 295 chain 76563 chr1 249250621 + 216303531 216304863 L1PB1 5432 - 19 1168 45177 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 6 5 39 18 16 53 2 0 9 4 0 12 4 3 8 1 0 20 158 0 12 3 4 166 0 6 123 1 0 69 0 1 26 2 1 16 1 2 62 3 0 272 1 4 87 chain 18562 chr1 249250621 + 216310582 216310813 THE1A 353 - 0 230 131328 151 1 0 79 chain 25543 chr1 249250621 + 216310873 216311197 MLT2A1 477 - 154 477 102036 119 0 1 23 0 1 9 7 4 166 chain 40610 chr1 249250621 + 216318942 216319393 LTR7 482 + 0 482 68420 247 1 32 203 chain 255074 chr1 249250621 + 216319395 216322432 HERVH-int 3825 + 0 3120 15978 157 0 1 326 0 56 30 1 0 10 1 0 19 1 0 5 28 0 15 1 0 12 7 45 22 2 1 54 3 4 5 0 2 14 2 1 444 16 1 461 4 31 290 0 4 1075 1 4 31 chain 44349 chr1 249250621 + 216325548 216326030 LTR7 482 + 0 482 63760 482 chain 39093 chr1 249250621 + 216383543 216384044 LTR3B_ 500 + 0 500 70612 121 0 1 226 6 4 148 chain 25464 chr1 249250621 + 216396042 216396341 AluSp 311 + 4 303 102380 299 chain 23322 chr1 249250621 + 216401731 216402087 THE1B 368 + 0 368 114079 172 1 0 21 5 0 7 37 55 113 chain 27521 chr1 249250621 + 216449927 216450282 THE1B 368 - 7 368 94598 160 0 2 26 2 1 127 2 7 38 chain 184756 chr1 249250621 + 216477901 216480348 L1PBa 3878 - 1232 3670 20518 12 0 4 146 0 1 4 5 0 7 0 1 6 1 0 236 0 2 304 0 6 291 0 4 9 2 0 623 7 10 243 0 4 210 1 0 47 50 28 214 2 0 22 1 0 4 chain 13781 chr1 249250621 + 216490246 216490417 L1PA11 4918 - 559 729 145330 32 1 0 138 chain 248970 chr1 249250621 + 216512933 216516340 L1PA8 5853 + 2444 5853 16313 41 0 4 31 5 6 280 15 14 94 26 19 56 0 1 155 0 1 219 2 1 28 11 0 84 0 6 57 3 4 45 63 65 139 0 1 4 11 10 1198 0 2 75 4 5 47 0 3 16 53 55 354 1 0 44 2 0 71 1 0 19 0 4 38 2 1 19 2 1 92 chain 6864 chr1 249250621 + 216517300 216517383 MER41B 635 + 495 579 178470 16 0 1 67 chain 6400 chr1 249250621 + 216520422 216520534 MER41-int 2638 + 116 213 182029 54 29 14 29 chain 5894 chr1 249250621 + 216539134 216539208 MER58A 224 - 105 179 186241 74 chain 40801 chr1 249250621 + 216547141 216547605 L1PA4 6152 + 5687 6151 68169 464 chain 15181 chr1 249250621 + 216610981 216611195 L1PA7 6471 - 3 219 140822 142 14 16 58 chain 26759 chr1 249250621 + 216620438 216620742 L1PA8 5853 + 5260 5564 97130 304 chain 9899 chr1 249250621 + 216620743 216620870 L1PA8 5853 + 5564 5688 161068 46 2 0 68 2 1 9 chain 13315 chr1 249250621 + 216620878 216621038 L1PA8 5853 + 5695 5853 147030 49 1 0 16 1 0 93 chain 20273 chr1 249250621 + 216643028 216643259 L1PA2 6032 + 5799 6031 126303 9 0 1 222 chain 8571 chr1 249250621 + 216654107 216654228 MER41E 591 + 399 508 167902 5 2 0 20 10 0 84 chain 544410 chr1 249250621 + 216658987 216664956 L1PA2 6032 + 6 6032 2156 251 1 0 1716 0 58 160 1 0 3605 0 1 235 chain 18556 chr1 249250621 + 216720172 216720396 L1PA7 6471 - 24 245 131342 156 0 1 52 4 0 12 chain 3274 chr1 249250621 + 216735909 216735943 MER20 218 + 86 120 219469 34 chain 23341 chr1 249250621 + 216757038 216757373 THE1B 368 - 24 368 113975 51 1 0 93 4 0 32 2 0 85 9 10 14 0 15 44 chain 21308 chr1 249250621 + 216759128 216759385 AluY 311 + 28 286 122833 104 0 1 153 chain 12661 chr1 249250621 + 216762642 216762826 MER30 238 + 41 238 149601 59 3 0 5 11 27 106 chain 9981 chr1 249250621 + 216764987 216765171 L1MC4 1079 + 125 305 160669 8 2 0 18 1 0 11 35 34 109 chain 8635 chr1 249250621 + 216838755 216838864 L1MB2 1706 + 1449 1558 167566 109 chain 16073 chr1 249250621 + 216854646 216854832 L1PA5 6144 - 9 195 138138 186 chain 27541 chr1 249250621 + 216865211 216865649 Tigger3b 1229 + 67 517 94531 27 9 26 108 8 9 41 0 5 12 2 0 40 19 9 83 6 7 83 chain 12253 chr1 249250621 + 216876545 216876732 MER30 238 - 0 202 151194 83 1 2 14 2 0 10 8 24 69 chain 62795 chr1 249250621 + 216881815 216882566 L1PA7 6471 + 5719 6467 51540 412 1 0 328 2 0 8 chain 49937 chr1 249250621 + 216935502 216936056 L1PA3long 6157 + 5602 6157 59064 550 0 1 4 chain 7732 chr1 249250621 + 217021347 217021471 MER20 218 - 40 188 172695 57 21 45 46 chain 44522 chr1 249250621 + 217047972 217048522 MLT2A2 560 + 0 552 63554 149 0 1 53 0 1 348 chain 23882 chr1 249250621 + 217146898 217147184 AluSp 311 + 12 298 111009 286 chain 32657 chr1 249250621 + 217242326 217242836 MLT2A1 477 + 0 477 79753 169 4 1 215 6 0 8 47 27 17 8 0 30 0 4 6 chain 25684 chr1 249250621 + 217254560 217254855 AluSp 311 - 3 298 101359 295 chain 65743 chr1 249250621 + 217388952 217389809 L1PA10 4194 - 44 868 50222 34 3 0 34 2 0 124 0 1 157 0 4 393 24 2 42 12 1 32 chain 176784 chr1 249250621 + 217430150 217432119 L1PA4 6152 + 4175 6152 21275 182 1 3 92 0 3 1681 0 3 13 chain 51028 chr1 249250621 + 217460989 217461619 L1PA7 6471 - 4 638 58290 249 1 2 186 7 8 26 0 2 161 chain 8639 chr1 249250621 + 217467050 217467214 L1MA3 4352 - 73 225 167543 22 2 0 13 16 12 25 9 5 23 1 0 47 1 0 5 chain 39714 chr1 249250621 + 217472504 217472983 L1PA7 6471 - 4 484 69736 6 6 0 145 1 3 110 0 4 62 0 1 149 chain 67512 chr1 249250621 + 217530889 217531635 L1PA3long 6157 - 1854 2600 49441 746 chain 163866 chr1 249250621 + 217531636 217533442 L1PA3long 6157 + 4330 6142 22825 27 0 4 815 0 1 902 0 1 62 chain 6532 chr1 249250621 + 217543610 217543708 MADE1 96 + 6 96 180986 40 9 0 17 0 1 32 chain 3664 chr1 249250621 + 217543708 217543763 MLT1B 390 + 236 291 212503 35 0 3 5 3 0 12 chain 520345 chr1 249250621 + 217552713 217559170 L1PA7 6471 + 3 6459 5119 90 3 0 110 5 7 107 8 9 85 0 1 107 1 2 178 10 7 45 0 3 214 0 3 131 7 8 199 0 1 140 0 19 843 5 6 37 46 0 283 1 2 25 2 0 479 0 5 205 0 1 101 5 1 42 1 0 50 0 4 447 4 2 33 10 13 221 3 0 185 1 0 870 0 2 288 0 3 125 0 1 497 5 16 203 chain 458584 chr1 249250621 + 217610276 217615842 L1PA7 6471 + 0 6469 8455 403 1 2 194 6 5 73 7 8 134 3 2 389 0 4 227 0 4 118 0 13 204 0 1 149 15 862 70 0 1 233 0 4 403 1 0 46 0 4 454 0 3 226 0 1 245 0 1 182 0 4 216 0 1 99 0 1 321 0 5 10 16 17 134 0 1 54 0 5 28 0 1 57 3 2 75 0 2 438 0 1 332 chain 95403 chr1 249250621 + 217652641 217654124 L1MA2 4263 + 34 4054 37983 32 0 6 43 22 24 25 0 5 14 9 14 39 1 0 20 1 0 12 1 0 13 0 3 49 4 6 6 0 1 44 0 1 92 3 4 5 2 0 184 6 9 58 0 1 85 0 2515 185 12 13 25 4 0 17 7 3 75 2 1 32 0 1 51 24 26 35 3 0 148 11 9 62 0 4 11 0 3 9 chain 148430 chr1 249250621 + 217696517 217698220 SVA_D 2077 - 1 2073 24822 741 0 78 171 0 183 76 0 2 64 6 80 28 0 2 587 0 16 6 0 4 10 1 0 4 0 11 9 chain 2999 chr1 249250621 + 217700430 217700464 MER1A 529 + 364 398 225039 34 chain 22931 chr1 249250621 + 217719401 217719738 L1PA13 3608 + 3133 3497 115961 27 1 0 113 2 0 20 0 1 42 1 0 26 1 0 5 4 37 40 2 0 4 2 0 20 1 0 20 0 3 6 chain 19494 chr1 249250621 + 217721940 217722270 THE1C 375 + 0 347 128671 40 0 5 128 58 69 72 10 11 22 chain 25261 chr1 249250621 + 217740388 217740679 AluSp 311 - 12 303 103406 291 chain 27427 chr1 249250621 + 217754089 217754382 AluYb9 318 + 21 313 94888 179 1 0 113 chain 24644 chr1 249250621 + 217823276 217823578 AluSp 311 - 9 309 106757 20 2 0 280 chain 560254 chr1 249250621 + 217863834 217869865 L1PA2 6032 - 4 6031 339 2211 0 1 3755 5 0 60 chain 30558 chr1 249250621 + 217877573 217877891 AluYb9 318 - 0 318 83327 318 chain 97082 chr1 249250621 + 217878033 217880901 L1PA15 4387 - 21 1837 37545 10 1 0 27 6 0 9 10 6 43 18 15 32 28 23 16 7 6 36 60 58 38 27 28 87 3 2 40 8 6 43 12 8 20 2 0 49 1 2 45 16 9 23 373 57 21 5 6 201 1 18 121 90 93 102 1 0 4 389 0 113 348 16 22 6 7 98 0 1 216 1 0 39 chain 24040 chr1 249250621 + 217900311 217900589 AluSp 311 + 4 282 110116 278 chain 3533 chr1 249250621 + 217908256 217908295 MER5A 189 - 149 188 214823 39 chain 28918 chr1 249250621 + 217917522 217917830 AluYa5 310 + 0 307 89383 132 1 0 175 chain 7892 chr1 249250621 + 217965309 217965470 MER30 238 - 0 175 171713 39 6 0 39 1 7 10 6 4 10 19 35 31 chain 24094 chr1 249250621 + 217981924 217982210 AluSc 308 + 11 294 109766 125 3 0 158 chain 9445 chr1 249250621 + 218000577 218000700 L1MA9 1812 + 486 609 163335 123 chain 31270 chr1 249250621 + 218027246 218027619 MER57A1 433 - 0 376 82044 150 0 1 81 0 2 142 chain 7260 chr1 249250621 + 218072578 218072659 L1PA3long 6157 + 6075 6156 175711 81 chain 8240 chr1 249250621 + 218074218 218074322 MER44A 345 + 135 239 169733 104 chain 7203 chr1 249250621 + 218079443 218079899 MLT1E2 623 + 61 563 176052 5 1 0 36 231 281 24 3 5 12 57 63 33 1 0 3 5 0 34 5 0 6 chain 23526 chr1 249250621 + 218085914 218086263 THE1D 372 + 5 357 112983 106 0 1 57 22 25 110 0 2 5 7 5 24 1 0 17 chain 26458 chr1 249250621 + 218086601 218086879 AluYb8 318 - 9 287 98215 278 chain 8203 chr1 249250621 + 218108656 218108833 MLT1C 463 + 8 186 169935 17 27 29 65 23 24 20 2 0 23 chain 8408 chr1 249250621 + 218109889 218110152 L1MA8 2339 + 2026 2265 168799 51 59 43 27 17 13 36 6 0 6 28 31 24 1 0 8 chain 3968 chr1 249250621 + 218120707 218120756 L1MC3 1789 + 1262 1311 207865 49 chain 6794 chr1 249250621 + 218123190 218123311 FordPrefect 1504 - 4 139 179000 28 7 18 43 1 0 12 5 9 25 chain 4659 chr1 249250621 + 218139031 218139110 L1PREC2 3366 + 2971 3048 198970 32 11 9 36 chain 566534 chr1 249250621 + 218182569 218188594 L1HS 6032 - 1 6030 116 851 0 4 5174 chain 195317 chr1 249250621 + 218192629 218196534 MER4-int 2692 + 1 2669 19555 10 1 0 25 2 0 63 1 0 7 8 9 5 2 0 180 0 1 92 2 0 26 0 5 168 1 2 120 5 4 77 963 0 69 1 0 51 3 4 28 1 0 227 1 3 18 0 3 213 0 3 26 0 8 56 5 26 157 0 1 176 0 1 37 4 5 38 1 0 14 306 0 46 1 0 262 7 0 9 1 0 212 1 4 16 5 6 155 chain 28471 chr1 249250621 + 218196576 218197016 MER4A1 472 + 9 472 91305 125 1 3 40 11 9 39 5 27 17 6 6 121 27 28 48 chain 42674 chr1 249250621 + 218199319 218199858 MER41C 542 + 1 540 65808 296 1 0 9 9 10 224 chain 79271 chr1 249250621 + 218245636 218246489 L1HS 6032 + 5177 6031 43927 78 1 2 774 chain 4368 chr1 249250621 + 218247045 218247154 MER5C 305 + 92 177 202341 12 2 3 42 35 10 18 chain 65528 chr1 249250621 + 218270869 218271582 L1PA3long 6157 + 5444 6157 50328 713 chain 16248 chr1 249250621 + 218294471 218294697 MER30 238 + 0 238 137621 107 4 18 69 3 0 29 0 1 14 chain 285886 chr1 249250621 + 218314881 218319274 L1PB1 5432 + 1128 5422 14294 35 2 1 147 0 1 16 17 18 35 79 92 82 5 12 40 1 2 49 0 3 43 1 0 430 0 1 50 0 6 235 1 0 9 0 6 16 0 3 38 1 2 40 0 1 83 0 1 14 10 7 123 9 9 42 11 9 5 0 2 6 3 0 134 1 2 173 9 12 72 1 0 244 0 2 107 0 1 106 0 1 31 10 5 230 2 0 22 0 1 7 14 13 21 0 2 40 0 5 358 1 0 4 4 26 67 0 1 24 67 68 87 0 1 394 1 0 10 142 1 24 38 30 52 2 1 15 1 0 22 4 9 13 1 0 16 2 0 15 8 0 15 29 24 20 1 0 21 2 1 12 1 0 18 chain 3233 chr1 249250621 + 218375228 218375264 MER5A1 166 + 47 83 220378 36 chain 3462 chr1 249250621 + 218383856 218383894 Tigger3a 397 - 316 354 215976 38 chain 20482 chr1 249250621 + 218407336 218407601 AluY 311 + 0 269 125675 47 19 23 199 chain 214935 chr1 249250621 + 218409236 218411814 L1PA7 6471 + 3871 6461 18169 137 1 2 264 0 2 556 4 0 364 1 0 214 3 0 187 24 36 363 0 5 98 2 0 124 1 3 235 chain 29119 chr1 249250621 + 218438519 218438947 MLT2A1 477 - 0 477 88461 37 23 55 39 4 20 80 11 12 29 0 1 24 0 1 9 4 1 160 0 1 8 chain 51186 chr1 249250621 + 218455093 218455829 L1PA8 5853 + 5124 5853 58198 232 3 4 120 20 19 65 1 0 39 10 8 68 1 0 13 2 1 47 2 1 19 1 0 93 chain 8857 chr1 249250621 + 218466358 218466489 AluJr4 308 - 1 126 166340 8 4 0 51 2 0 66 chain 37677 chr1 249250621 + 218493404 218493822 L1PA3long 6157 - 0 418 72577 418 chain 123816 chr1 249250621 + 218590386 218591954 THE1B-int 1605 + 0 1594 29761 48 0 1 218 6 5 10 0 2 148 13 38 299 1 0 7 0 1 355 6 5 457 chain 24123 chr1 249250621 + 218591964 218592338 THE1B 368 + 0 368 109628 44 5 20 94 18 0 14 23 20 176 chain 145911 chr1 249250621 + 218600678 218602313 L1PA5 6144 - 0 1635 25188 339 8 9 626 1 0 661 chain 2793 chr1 249250621 + 218650222 218650252 MER33 330 - 38 68 228827 30 chain 23186 chr1 249250621 + 218660862 218661169 AluSc 308 + 8 308 114744 40 14 8 201 2 1 50 chain 40736 chr1 249250621 + 218681368 218681845 LTR12C 1709 - 0 474 68264 84 1 0 179 2 0 211 chain 7341 chr1 249250621 + 218682388 218682526 MER1A 529 + 404 522 175148 49 38 18 51 chain 3058 chr1 249250621 + 218724099 218724138 MER106A 234 + 29 68 223852 39 chain 75009 chr1 249250621 + 218728070 218728954 L1PA7 6471 - 16 915 46012 146 1 2 597 0 1 90 1 0 35 0 14 14 chain 3084 chr1 249250621 + 218728954 218728987 U3 216 + 5 38 223234 33 chain 42758 chr1 249250621 + 218733316 218733787 L1PA3long 6157 - 0 471 65714 471 chain 68990 chr1 249250621 + 218733787 218734548 L1PA3long 6157 + 4924 5688 48815 752 0 3 9 chain 8083 chr1 249250621 + 218736893 218736980 L1PA4 6152 + 6059 6146 170581 87 chain 16254 chr1 249250621 + 218750509 218750883 MSTB 430 + 0 398 137596 79 134 150 62 1 0 26 4 13 68 chain 29567 chr1 249250621 + 218766969 218767402 LTR7 482 + 0 482 86353 138 74 123 221 chain 22320 chr1 249250621 + 218767404 218767651 HERVH-int 3825 + 0 247 118828 247 chain 298602 chr1 249250621 + 218768836 218772974 HERVH-int 3825 - 0 3825 13496 225 3 8 254 8 218 413 0 10 981 8 35 239 0 1 203 15 0 322 0 3 134 2 1 48 8 7 24 2 1 42 1 0 7 19 0 14 0 31 24 65 0 10 65 0 36 432 0 534 chain 4537 chr1 249250621 + 218771834 218771897 HERVH-int 3825 - 3246 3364 182489 9 1 0 26 1 57 26 chain 5401 chr1 249250621 + 218772017 218772076 HERVH-int 3825 - 3295 3354 182671 59 chain 6380 chr1 249250621 + 218772076 218772149 HERVH-int 3825 - 3293 3366 182181 73 chain 2465 chr1 249250621 + 218772277 218772306 HERVH-int 3825 - 3045 3074 233527 29 chain 5503 chr1 249250621 + 218772379 218772440 HERVH-int 3825 - 3291 3352 180580 61 chain 29041 chr1 249250621 + 218772976 218773407 LTR7 482 - 0 482 88801 176 0 1 9 0 31 42 1 2 10 56 73 75 0 1 62 chain 10786 chr1 249250621 + 218780258 218780555 L1MA8 2339 + 2062 2326 157050 24 4 0 6 0 1 9 1 6 9 22 2 34 13 10 33 3 4 36 2 0 17 3 0 12 42 34 27 chain 29166 chr1 249250621 + 218785924 218786234 AluYa5 310 - 0 310 88222 310 chain 415093 chr1 249250621 + 218801191 218806313 L1PA8A 6298 - 7 5156 9665 105 2 4 6 1 0 194 1 2 420 10 11 65 2 0 63 4 3 744 0 1 195 0 2 153 0 1 4 0 1 38 0 3 83 1 3 315 5 6 79 0 1 391 4 0 153 9 16 457 0 2 35 0 1 81 0 1 138 6 8 397 0 1 254 0 1 639 11 15 57 chain 451549 chr1 249250621 + 218820839 218826653 L1PA7 6471 - 3 5550 8717 7 4 0 21 0 1 286 6 7 525 5 4 34 0 12 622 2 0 181 6 5 84 0 8 63 0 2 118 1 2 172 0 3 42 1 0 175 0 1 357 0 1 129 1 0 110 6 5 491 311 0 123 4 3 67 0 4 141 0 16 5 0 1 466 1 2 413 1 0 240 9 14 328 1 0 58 0 2 93 1 0 103 chain 11390 chr1 249250621 + 218826693 218826831 L1P3 4156 + 371 509 154743 138 chain 21400 chr1 249250621 + 218840726 218840972 AluYk4 311 + 52 298 122511 246 chain 40204 chr1 249250621 + 218888788 218889348 LTR12_ 688 - 0 688 69023 33 0 133 63 14 17 10 36 3 289 0 25 115 chain 24127 chr1 249250621 + 218897316 218897619 AluY 311 + 4 299 109600 118 16 8 169 chain 34429 chr1 249250621 + 218993109 218993571 L1PA8 5853 - 0 454 77018 87 7 6 18 3 2 52 1 0 9 1 0 71 2 0 44 1 0 43 1 0 122 chain 3628 chr1 249250621 + 218993571 218993634 L1P3 4156 + 4076 4136 213186 31 11 8 21 chain 143171 chr1 249250621 + 218994307 218996085 L1P1 4361 + 2554 4341 25624 1334 0 10 252 1 0 5 0 1 57 0 1 91 1 0 23 2 1 12 chain 64643 chr1 249250621 + 219019608 219020402 L1PA7 6471 + 5681 6470 50728 28 5 6 421 0 1 327 7 0 6 chain 14159 chr1 249250621 + 219094629 219094783 L1PA4 6152 + 5987 6141 144014 154 chain 129379 chr1 249250621 + 219108715 219110576 L1PBa 3878 - 1975 3788 28229 17 0 5 262 13 0 235 5 0 3 16 0 393 2 4 116 19 18 9 1 2 71 9 6 56 5 12 172 2 1 55 1 2 230 12 10 12 1 0 36 59 38 37 2 1 10 chain 21437 chr1 249250621 + 219114640 219115006 THE1B 368 + 0 368 122381 13 2 0 51 62 62 46 1 0 125 2 0 9 4 11 51 chain 23460 chr1 249250621 + 219125622 219125915 AluSp 311 - 11 300 113314 130 2 0 37 2 0 122 chain 23437 chr1 249250621 + 219147080 219147458 THE1D 372 + 0 372 113437 55 33 24 96 1 0 16 5 0 7 5 9 27 1 7 99 1 0 32 chain 120616 chr1 249250621 + 219244087 219245665 THE1B-int 1605 + 0 1605 30840 412 1 2 4 1 0 12 1 26 163 19 20 13 0 1 366 2 0 7 17 19 560 chain 10626 chr1 249250621 + 219247383 219247503 L1PA3long 6157 + 6037 6157 157707 120 chain 25778 chr1 249250621 + 219269764 219270142 THE1B-int 1605 + 35 420 100974 23 8 16 227 27 26 93 chain 286346 chr1 249250621 + 219276028 219279145 L1PA3long 6157 - 0 3117 14267 3117 chain 19511 chr1 249250621 + 219286676 219287914 L1PA13 3608 + 185 1280 42908 17 137 16 49 26 24 124 1 0 4 0 2 5 24 19 16 25 20 8 4 0 11 3 1 15 2 0 13 1 0 39 0 1 58 1 0 3 2 0 296 4 0 207 1 2 25 4 7 113 chain 22117 chr1 249250621 + 219287914 219288163 L1P1 4361 - 1096 1345 117319 249 chain 119234 chr1 249250621 + 219288163 219289459 L1PA3long 6157 + 4860 6156 31318 1296 chain 4555 chr1 249250621 + 219291568 219291857 L1PA13 3608 + 3137 3422 42908 22 1 0 20 12 13 74 11 9 60 1 0 25 1 2 34 2 0 26 chain 52524 chr1 249250621 + 219369847 219370549 L1PA10 4194 + 3444 4161 57286 168 7 5 253 10 26 198 0 5 17 3 0 34 2 1 10 chain 25669 chr1 249250621 + 219378460 219378734 AluYb8 318 + 43 317 101409 274 chain 3734 chr1 249250621 + 219401538 219401583 MLT1L 557 - 352 397 211405 45 chain 4168 chr1 249250621 + 219415551 219415621 MLT1J2-int 891 + 319 387 205000 37 1 0 6 9 8 17 chain 73944 chr1 249250621 + 219430764 219431810 MER11A 1151 - 31 1151 46545 29 7 6 164 0 35 24 3 0 182 0 1 290 0 1 64 35 0 24 14 11 61 23 3 47 0 99 79 chain 108184 chr1 249250621 + 219481309 219482794 THE1A-int 1579 + 113 1568 34655 164 4 5 308 4 5 258 0 1 5 1 0 233 0 2 5 35 33 87 0 1 85 24 11 11 18 0 46 2 0 195 chain 105205 chr1 249250621 + 219493788 219494980 L1PA5 6144 - 4 1196 35447 1192 chain 22768 chr1 249250621 + 219525590 219525861 AluYc 301 + 0 274 116737 120 0 2 127 8 9 16 chain 29257 chr1 249250621 + 219540370 219540829 MER75 514 + 0 448 87753 138 8 0 62 20 15 47 34 36 150 chain 5313 chr1 249250621 + 219567857 219567966 L1MB3 1562 - 145 254 191890 28 29 30 7 1 0 44 chain 120794 chr1 249250621 + 219583811 219585254 LTR12C 1709 + 0 1709 30760 76 0 1 232 0 1 4 1 0 523 1 0 75 0 162 37 1 0 5 3 1 107 0 4 43 1 0 74 0 2 49 0 102 211 chain 6208 chr1 249250621 + 219588946 219589020 MER66C 541 - 246 320 183521 74 chain 4331 chr1 249250621 + 219595610 219595663 MER58A 224 - 144 197 202828 53 chain 232047 chr1 249250621 + 219628914 219631411 L1PA2 6032 + 3533 6030 17194 2497 chain 26097 chr1 249250621 + 219653623 219653915 AluYf4 310 - 18 310 99634 292 chain 161554 chr1 249250621 + 219718311 219720214 SVA_D 2077 + 2 2066 23122 8 1 0 6 1 0 8 1 0 4 1 0 6 0 1 114 4 3 235 0 3 530 0 38 21 0 100 50 37 0 127 37 0 47 0 98 665 chain 50070 chr1 249250621 + 219735051 219735588 L1PA2 6032 + 5493 6030 58966 537 chain 39663 chr1 249250621 + 219770997 219771459 L1PA7 6471 + 5995 6458 69808 276 0 1 186 chain 3320 chr1 249250621 + 219776813 219776848 U2 167 + 0 35 218564 35 chain 80494 chr1 249250621 + 219791936 219792911 LTR5B 1012 - 18 1012 43394 155 0 4 347 1 0 143 1 0 197 4 18 97 0 3 30 chain 53871 chr1 249250621 + 219795131 219795738 L1P1 4361 + 3714 4319 56446 436 1 0 155 1 0 14 chain 245796 chr1 249250621 + 219816460 219819887 L1MA3 4352 + 39 3489 16465 22 6 3 92 1 0 19 5 0 131 3 0 31 14 15 415 1 0 6 2 0 88 4 3 11 1 0 206 1 0 29 1 0 4 11 12 20 0 1 161 0 1 9 1 2 156 8 29 24 1 0 81 13 13 27 12 25 14 11 10 4 0 1 4 1 0 53 0 4 17 0 1 4 0 5 139 0 1 380 2 1 38 0 1 60 2 0 104 5 0 26 0 1 46 1 0 27 0 3 5 3 0 105 0 1 345 0 1 5 1 0 31 0 1 115 0 1 158 2 0 102 chain 8135 chr1 249250621 + 219827310 219827424 L1MA2 4263 - 152 259 170307 6 1 0 35 0 1 11 7 0 54 chain 22389 chr1 249250621 + 219837345 219837626 AluSc 308 + 29 303 118539 72 7 0 202 chain 5851 chr1 249250621 + 219851648 219851713 L1PA6 6164 - 6 71 186675 65 chain 34012 chr1 249250621 + 219879131 219879650 L1PA11 4918 + 4078 4578 77600 94 1 2 157 0 1 61 2 1 13 2 0 67 2 0 14 1 0 16 50 38 12 1 0 12 3 1 11 chain 70680 chr1 249250621 + 219880640 219881507 L1PA7 6471 - 10 873 48074 417 1 0 60 5 0 281 7 8 80 0 1 16 chain 45001 chr1 249250621 + 219893806 219894482 L1PB4 2604 + 1611 2297 63057 35 0 15 81 1 5 142 22 18 301 28 29 13 20 14 33 chain 7307 chr1 249250621 + 219896829 219896917 MLT1B 390 + 284 372 175389 88 chain 227223 chr1 249250621 + 219900615 219903284 L1PA6 6164 - 4 2677 17474 664 0 4 450 13 14 93 0 1 260 0 1 80 0 1 270 0 1 284 8 3 547 chain 52507 chr1 249250621 + 219935869 219936522 L1PA8 5853 + 5205 5853 57301 340 0 1 18 1 0 17 1 5 22 2 0 71 1 0 9 3 0 6 1 0 46 2 1 22 1 0 90 chain 316736 chr1 249250621 + 219938933 219943218 L1PB1 5432 + 1186 5424 12734 203 32 10 113 11 6 35 0 6 37 0 6 123 0 2 215 10 4 84 0 6 152 0 4 202 0 1 104 1 0 343 2 0 125 7 15 218 3 6 35 0 1 79 0 1 253 2 5 119 0 1 35 7 0 176 24 20 407 0 1 287 3 0 87 7 8 382 5 6 5 3 0 24 1 0 9 16 11 9 2 0 53 2 1 9 8 7 43 1 0 16 1 0 4 2 0 13 46 33 24 1 0 21 9 0 13 1 0 16 1 0 4 chain 16497 chr1 249250621 + 219948007 219948222 THE1C 375 + 1 218 136931 12 2 0 104 1 5 96 chain 166766 chr1 249250621 + 219948232 219950059 L1PA3long 6157 - 10 1835 22424 715 2 0 1110 chain 53322 chr1 249250621 + 219950059 219950647 L1PA3long 6157 + 3728 4317 56679 218 0 1 370 chain 4783 chr1 249250621 + 219953955 219954014 MLT1I 406 + 83 142 197538 59 chain 2621 chr1 249250621 + 219978141 219978195 MIR 256 - 119 172 231406 22 15 14 17 chain 9743 chr1 249250621 + 220002218 220002510 L1PREC2 3366 - 360 614 161878 35 51 35 11 7 5 13 12 7 12 29 21 13 3 0 4 1 0 33 2 0 11 8 7 47 chain 11974 chr1 249250621 + 220004828 220004965 L1PA7 6471 - 17 154 152310 137 chain 73124 chr1 249250621 + 220004981 220005827 L1PA7 6471 + 5341 6185 46965 199 2 0 81 1 0 298 0 1 265 chain 556835 chr1 249250621 + 220012681 220018849 L1PA3long 6157 + 7 6157 628 475 0 1 1673 1 0 1962 1 0 937 10 0 309 7 0 793 chain 263108 chr1 249250621 + 220022156 220025910 L1PB2 3958 + 70 3838 15535 14 5 0 14 15 10 29 3 1 34 15 6 47 8 5 23 0 1 37 9 13 66 0 1 96 3 1 63 2 0 9 0 1 279 5 10 10 4 14 184 0 8 205 2 0 24 5 6 229 4 5 60 4 3 18 3 0 51 0 3 306 1 6 44 24 0 9 0 24 349 2 0 88 2 5 11 9 4 52 0 3 5 3 0 160 0 1 27 2 0 90 0 27 60 6 5 282 0 2 97 2 0 56 1 0 14 1 0 4 6 3 54 18 13 89 1 0 77 10 9 54 1 0 48 0 3 22 2 0 22 1 0 63 chain 405269 chr1 249250621 + 220027279 220032095 L1PA6 6164 - 12 4850 9936 114 0 16 11 3 1 449 0 1 20 0 1 46 1 0 169 0 4 821 15 18 1650 0 1 496 4 5 151 1 0 141 1 0 723 chain 539603 chr1 249250621 + 220036912 220042919 L1PA3long 6157 + 5 6144 2880 5 3 0 25 0 1 116 11 12 394 1 0 213 8 133 122 1 0 223 1 0 197 1 0 299 0 4 170 1 6 1236 0 1 353 0 1 1124 0 1 1503 chain 44167 chr1 249250621 + 220046145 220046617 SVA_F 1814 - 0 471 63989 12 1 0 459 chain 3712 chr1 249250621 + 220046618 220046661 U5 65 + 5 48 211749 43 chain 12104 chr1 249250621 + 220046735 220046873 L1PA3long 6157 + 6019 6157 151783 138 chain 480689 chr1 249250621 + 220060678 220066172 L1PA4 6152 + 629 6143 7701 988 0 1 226 0 4 807 0 2 184 0 1 423 0 2 506 5 6 341 0 1 292 0 1 250 0 1 84 0 1 151 0 1 376 0 4 861 chain 159704 chr1 249250621 + 220121201 220122948 L1PA3long 6157 + 4243 5996 23375 1061 0 4 213 0 2 473 chain 12701 chr1 249250621 + 220122961 220123102 L1PA3long 6157 + 6016 6157 149446 141 chain 48504 chr1 249250621 + 220235487 220236015 L1PA3long 6157 - 0 528 60106 528 chain 21574 chr1 249250621 + 220260623 220260904 AluSg 306 + 1 284 121868 13 0 6 215 11 7 42 chain 23983 chr1 249250621 + 220275063 220275358 AluY 311 + 3 290 110424 214 1 0 18 9 0 31 0 2 22 chain 29608 chr1 249250621 + 220285466 220285775 AluYb8 318 - 9 318 86186 309 chain 23473 chr1 249250621 + 220326947 220327217 L1PA5 6144 - 2 272 113255 270 chain 46013 chr1 249250621 + 220343233 220343767 L1PA7 6471 + 5932 6468 62032 206 0 1 117 0 1 211 chain 24018 chr1 249250621 + 220347097 220347385 AluSc8 310 + 17 308 110228 115 0 3 173 chain 36350 chr1 249250621 + 220377934 220378377 L1PA4 6152 - 0 438 74430 10 0 6 87 4 3 180 0 3 109 13 0 40 chain 23812 chr1 249250621 + 220391803 220392093 L1PA5 6144 + 5856 6144 111404 276 3 1 11 chain 118470 chr1 249250621 + 220417242 220420732 L1PB2 3958 + 2049 3838 31624 14 0 1 57 0 1 43 0 9 129 7 11 170 0 1 211 2 1 19 0 1 203 6 5 23 0 76 26 2 8 112 0 4 137 2 0 52 1 0 14 1801 10 52 2 0 9 2 0 8 1 0 75 10 9 78 1 0 61 2 1 29 0 1 65 7 6 57 chain 76669 chr1 249250621 + 220418497 220419345 L1HS 6032 + 1 849 44902 848 chain 82418 chr1 249250621 + 220419345 220420251 L1PA2 6032 + 5096 6025 42576 229 2 7 68 0 1 597 0 17 10 chain 329588 chr1 249250621 + 220428603 220433514 L1PA11 4918 + 8 4578 12219 7 1 0 26 7 5 5 0 1 26 2 0 5 3 2 22 0 7 6 6 1 7 2 0 53 1 0 25 17 14 248 8 7 27 0 1 4 1 0 84 1 3 219 13 38 388 8 23 7 0 1 20 0 2 59 1 0 40 13 0 195 1 2 12 0 4 205 1 5 42 334 0 239 7 6 113 2 0 180 26 12 108 0 6 24 2 0 113 0 4 256 1 0 303 0 1 129 6 5 15 14 19 118 0 3 156 4 1 112 0 1 82 6 7 56 24 6 13 4 10 129 0 1 145 12 17 41 1 0 47 17 13 46 2 1 13 3 0 67 2 0 12 67 53 15 1 0 13 2 0 11 chain 7983 chr1 249250621 + 220441634 220441770 MER47B 469 - 125 250 171154 71 14 12 31 9 0 11 chain 166520 chr1 249250621 + 220482028 220484020 L1PA7 6471 + 4484 6469 22458 283 7 0 58 0 1 435 0 3 13 1 0 344 1 0 53 1 0 636 6 5 154 chain 14909 chr1 249250621 + 220492646 220492862 MSTB1-int 1597 + 1378 1586 141609 113 6 0 37 0 1 30 1 0 17 0 1 4 3 0 5 chain 27793 chr1 249250621 + 220522247 220522565 L1PA4 6152 - 0 318 93720 318 chain 32439 chr1 249250621 + 220555001 220555452 LTR2 463 - 0 463 80129 225 0 1 6 58 69 162 chain 7376 chr1 249250621 + 220570528 220570622 L1PB4 2604 - 104 197 174927 87 1 0 6 chain 104310 chr1 249250621 + 220585586 220586848 LTR12C 1709 + 0 1709 35667 7 4 0 785 9 325 107 0 4 289 1 132 60 chain 24979 chr1 249250621 + 220586848 220587175 MER11C 1089 - 744 1089 104912 22 4 8 60 4 13 12 0 5 225 chain 19680 chr1 249250621 + 220596884 220597202 MER2 342 + 6 329 128162 40 10 22 12 6 0 29 0 1 167 2 3 13 9 10 9 4 0 17 chain 5148 chr1 249250621 + 220610816 220610895 MADE1 96 - 0 96 193559 28 9 26 42 chain 5877 chr1 249250621 + 220613996 220614080 MER5A 189 - 98 189 186409 37 5 12 42 chain 76604 chr1 249250621 + 220617434 220618590 MER11A 1151 + 0 1151 45158 85 0 91 44 7 11 61 12 8 143 0 1 95 0 7 138 0 1 67 1 2 12 8 18 51 25 1 26 43 0 22 18 0 36 0 1 14 34 2 35 1 0 11 0 1 167 chain 167914 chr1 249250621 + 220639028 220640909 SVA_D 2077 - 2 2075 22293 593 0 98 299 0 51 84 18 60 256 0 1 631 chain 104873 chr1 249250621 + 220648192 220649601 LTR12C 1709 - 0 1709 35535 80 10 1 187 1 2 30 42 46 42 19 20 73 0 4 65 0 47 98 0 278 158 5 4 309 25 0 265 chain 218138 chr1 249250621 + 220710449 220712846 L1PA3long 6157 - 17 2436 17996 278 1 2 189 0 1 440 0 10 494 0 7 258 0 3 737 chain 515063 chr1 249250621 + 220778862 220785005 L1PA6 6164 - 4 6135 5666 6 2 0 117 0 1 557 9 0 325 2 1 154 0 4 667 1 0 220 0 2 43 33 0 16 3 0 141 0 2 8 0 3 5 5 4 706 2 1 158 4 5 415 0 3 67 1 0 203 0 1 467 0 5 201 0 1 673 1 0 411 2 1 46 0 2 255 2 1 24 0 2 36 1 0 4 18 35 132 chain 13299 chr1 249250621 + 220814622 220814906 MLT1A0 366 + 67 366 147087 44 0 5 39 89 98 14 6 7 92 chain 272052 chr1 249250621 + 220816226 220819958 L1PA10 4194 + 367 4143 15076 6 1 0 7 1 0 13 6 2 8 1 0 46 36 34 14 14 15 55 5 6 123 1 4 30 4 5 31 0 11 55 1 3 101 1 13 150 1 4 192 0 3 41 7 10 188 9 8 106 0 2 316 14 0 71 0 1 183 1 5 235 0 1 94 0 3 67 0 1 5 0 1 19 0 1 16 1 5 38 37 39 126 0 2 230 8 12 7 0 6 259 0 7 29 32 22 57 1 0 401 0 1 22 11 13 63 0 1 70 1 0 34 3 0 27 chain 4658 chr1 249250621 + 220877501 220877557 MER41D 557 + 0 56 198982 56 chain 16247 chr1 249250621 + 220881830 220882057 L1PA8 5853 + 5625 5847 137623 51 4 3 61 2 1 19 1 0 57 2 0 30 chain 99767 chr1 249250621 + 220889371 220890664 MER4-int 2692 + 1325 2689 36839 62 5 21 57 3 4 247 0 1 37 0 1 134 1 0 30 3 0 37 7 11 34 2 0 123 2 0 140 3 0 16 6 0 45 0 1 87 0 54 97 0 10 115 chain 205527 chr1 249250621 + 220893539 220896061 Harlequin-int 5206 + 127 3426 18825 20 1 0 11 3 4 131 1 2 11 0 1 32 7 6 11 4 9 14 1 0 106 3 0 401 0 778 597 3 1 1036 0 1 5 1 0 77 4 3 42 chain 4816 chr1 249250621 + 220896459 220896515 MER4A1 472 - 0 56 197163 56 chain 120889 chr1 249250621 + 220910237 220912237 L1MA2 4263 - 159 2913 30731 46 4 0 50 5 2 41 11 9 150 13 10 131 5 4 74 8 7 354 4 5 87 0 1 159 0 1 63 8 9 37 18 0 48 0 3 11 0 1 156 12 10 75 258 1035 31 0 1 7 1 0 89 0 3 44 chain 20074 chr1 249250621 + 220943208 220943478 AluY 311 + 58 310 126899 75 21 5 162 2 0 10 chain 13396 chr1 249250621 + 220945079 220945261 L1PA8 5853 + 5675 5853 146737 4 1 0 9 1 0 52 2 1 19 1 0 93 chain 16118 chr1 249250621 + 220962686 220962885 MER30 238 - 7 237 138001 92 0 13 92 0 18 15 chain 8583 chr1 249250621 + 220990853 220990994 LTR12 884 - 547 781 167828 71 13 81 27 3 28 27 chain 3986 chr1 249250621 + 221010210 221010295 L1MC4 1079 + 26 110 207596 25 27 26 33 chain 445651 chr1 249250621 + 221032133 221037738 L1PA7 6471 - 6 6468 8882 6 3 0 91 0 8 266 0 1 304 3 4 82 1 0 81 2 0 101 0 1 303 5 15 115 1 0 174 0 660 411 7 6 220 0 1 42 0 3 51 0 2 409 1 3 344 14 0 92 0 1 146 0 2 356 0 1 5 1 0 797 19 20 86 0 3 5 2 0 87 1 3 393 0 15 239 11 181 118 11 10 62 1 0 136 chain 284006 chr1 249250621 + 221070821 221074265 L1PA7 6471 - 6 3455 14416 85 12 20 51 0 2 667 0 1 4 1 0 14 2 1 533 1 0 412 0 4 622 1 2 39 12 0 23 0 1 431 0 4 35 1 0 498 chain 15262 chr1 249250621 + 221116416 221116615 L1PA16 3655 - 564 764 140597 27 0 1 83 0 2 63 1 0 11 1 0 13 chain 3191 chr1 249250621 + 221126615 221126653 LTR33B 472 + 391 429 221095 38 chain 46808 chr1 249250621 + 221142002 221142586 L1PA7 6471 - 590 1187 61364 170 2 1 7 0 2 71 4 6 140 0 3 105 0 7 85 chain 34632 chr1 249250621 + 221142586 221142980 L1PA7 6471 + 5892 6293 75864 278 0 7 116 chain 29088 chr1 249250621 + 221145150 221145587 MLT2A1 477 - 74 477 88604 10 2 0 21 33 0 61 9 10 96 0 1 9 0 1 14 0 1 8 3 0 171 chain 16649 chr1 249250621 + 221146846 221147066 L1PA8 5853 + 5637 5853 136533 42 1 0 9 1 0 50 1 0 22 1 0 93 chain 25470 chr1 249250621 + 221168748 221169027 L1HS 6032 - 2 281 102353 279 chain 117742 chr1 249250621 + 221169038 221170294 L1HS 6032 + 4513 5769 31879 1256 chain 24652 chr1 249250621 + 221172209 221172499 AluSc 308 - 10 298 106709 10 2 0 278 chain 9508 chr1 249250621 + 221179529 221179667 HSMAR2 1300 + 1151 1294 163031 37 0 3 40 10 12 51 chain 49957 chr1 249250621 + 221211475 221212209 L1PA13 3608 - 176 895 59054 36 2 0 5 1 0 28 7 1 27 1 0 59 0 1 4 3 0 107 4 3 16 17 13 123 8 13 156 3 0 127 chain 529516 chr1 249250621 + 221220480 221226894 L1PA7 6471 + 2 6470 4241 360 1 0 49 0 1 611 1 2 191 0 1 390 0 1 151 0 11 397 0 1 457 21 23 109 11 12 220 0 4 487 7 6 350 1 0 83 0 23 255 1 0 72 9 8 1192 0 5 145 0 12 357 0 1 147 0 1 266 5 1 55 2 0 11 chain 40125 chr1 249250621 + 221226972 221227485 MER41A 554 - 16 525 69145 79 0 1 305 12 6 53 0 1 64 chain 14724 chr1 249250621 + 221235093 221235414 L1PB1 5432 + 5120 5427 142183 18 1 0 9 1 0 11 7 11 51 2 1 16 1 0 43 1 0 16 22 12 19 7 4 15 2 7 17 1 0 21 1 0 8 6 5 18 2 0 5 chain 4389 chr1 249250621 + 221246137 221246192 MER53 195 - 139 195 202091 32 0 1 23 chain 7720 chr1 249250621 + 221293673 221293779 MLT1B 390 + 281 388 172790 18 1 2 87 chain 29569 chr1 249250621 + 221362741 221363057 AluYb8 318 + 0 315 86335 206 1 0 109 chain 76186 chr1 249250621 + 221369907 221370782 MER11D 897 - 0 897 45373 300 0 23 293 1 0 281 chain 459486 chr1 249250621 + 221379930 221385876 L1PA7 6471 + 3 6458 8422 400 1 0 9 44 30 316 0 3 451 0 1 1026 0 2 190 4 5 329 2 0 85 1 3 298 231 0 352 1 0 190 6 4 647 0 725 392 0 2 27 0 1 52 1 2 74 3 2 67 0 4 9 2 0 601 4 22 33 0 3 98 chain 50150 chr1 249250621 + 221406974 221407698 LTR12D 1347 + 405 1347 58907 130 2 33 17 6 5 103 19 13 134 17 21 67 0 200 205 10 0 14 chain 4172 chr1 249250621 + 221423048 221423097 MADE1 96 + 46 95 204949 49 chain 3361 chr1 249250621 + 221428291 221428329 L1ME1 1623 + 1236 1274 217854 38 chain 518672 chr1 249250621 + 221430795 221436957 L1PA5 6144 - 0 6142 5313 149 2 0 1267 0 7 150 2 0 947 0 1 611 3 2 176 33 0 188 0 1 912 0 1 274 0 1 228 1 0 59 9 0 218 24 0 117 0 17 39 6 16 629 1 15 117 chain 27300 chr1 249250621 + 221449101 221449594 MER51A 677 + 0 660 95277 132 57 60 69 36 207 64 7 8 43 8 0 19 0 1 4 1 0 53 chain 116893 chr1 249250621 + 221458141 221459561 LTR12C 1709 - 4 1709 32162 80 5 4 171 1 0 137 1 0 49 1 3 11 0 1 21 0 4 105 5 3 4 1 0 36 0 2 66 0 278 529 8 12 189 chain 33157 chr1 249250621 + 221499160 221499616 L1PA16 3655 - 95 547 78974 144 1 0 114 14 12 89 1 0 93 chain 26123 chr1 249250621 + 221526848 221527206 THE1C 375 - 0 375 99515 26 1 0 143 0 3 21 0 1 4 12 26 151 chain 4677 chr1 249250621 + 221528895 221528955 FAM 185 + 108 168 198784 60 chain 60581 chr1 249250621 + 221538116 221538903 MER4E1 777 - 0 777 52528 87 4 0 31 7 6 46 0 4 52 18 3 51 0 4 60 0 1 414 0 1 17 chain 539280 chr1 249250621 + 221556406 221562544 L1PA5 6144 - 1 6144 2934 317 0 1 1390 0 1 287 0 3 372 0 1 46 0 1 448 9 2 1838 0 3 239 1 2 146 0 1 1045 chain 20840 chr1 249250621 + 221598333 221598633 THE1B 368 - 62 368 124486 63 39 46 28 1 0 169 chain 119137 chr1 249250621 + 221598633 221600196 THE1B-int 1605 - 0 1605 31363 257 4 6 139 7 12 162 1 0 352 2 0 81 5 6 139 4 29 98 0 13 121 1 0 190 chain 24995 chr1 249250621 + 221600198 221600557 THE1B 368 - 2 368 104822 123 35 45 5 2 0 24 1 0 169 chain 3754 chr1 249250621 + 221634384 221634429 MADE1 96 - 50 95 211080 45 chain 146449 chr1 249250621 + 221639091 221641366 L1PBa 3878 - 920 2878 25097 144 0 1 17 0 5 48 1 0 31 4 0 8 2 0 6 0 6 28 2 1 195 3 2 32 3 0 283 0 8 3 330 0 247 0 1 99 0 1 178 1 0 232 2 1 92 1 0 97 0 1 54 49 54 83 chain 14832 chr1 249250621 + 221695561 221695744 MSTA 426 - 0 183 141835 183 chain 22945 chr1 249250621 + 221697248 221697528 AluSp 311 + 1 282 115884 140 0 1 140 chain 63863 chr1 249250621 + 221724016 221724793 LTR17 781 - 0 781 51073 12 0 1 256 1 4 30 11 12 139 1 0 327 chain 26900 chr1 249250621 + 221760347 221760711 THE1B 368 + 0 368 96630 15 2 0 22 0 5 23 1 2 96 6 5 171 0 1 28 chain 74034 chr1 249250621 + 221760726 221761704 THE1B-int 1605 + 15 1031 46494 99 14 12 29 1 4 242 0 2 29 0 25 24 0 1 27 1 0 159 4 0 41 9 10 291 0 13 8 chain 36584 chr1 249250621 + 221764094 221764542 MLT2A1 477 + 0 477 74121 140 0 1 28 1 5 211 3 27 65 chain 36360 chr1 249250621 + 221764696 221765121 L1PA7 6471 + 6047 6470 74422 418 2 0 5 chain 6629 chr1 249250621 + 221828103 221828180 MSTB 430 + 7 84 180243 77 chain 41503 chr1 249250621 + 221858557 221859066 MLT2A2 560 - 58 560 67276 84 0 11 238 18 0 169 chain 4015 chr1 249250621 + 221863834 221863882 MER63A 208 - 44 92 207169 48 chain 29584 chr1 249250621 + 221917372 221917798 MER4E 760 - 0 426 86256 106 0 2 114 12 7 77 0 1 41 1 0 22 0 1 4 23 25 26 chain 7828 chr1 249250621 + 222010676 222010777 U6 107 - 1 101 172137 49 1 0 51 chain 55871 chr1 249250621 + 222066108 222066940 L1PA16 3655 + 1559 2392 55197 89 0 1 77 4 3 56 17 10 85 10 13 13 1 2 92 0 1 153 0 1 78 6 0 62 7 10 23 19 16 7 0 8 33 chain 27464 chr1 249250621 + 222105219 222105576 L1PA8A 6298 + 5931 6290 94769 96 0 1 161 11 12 89 chain 35868 chr1 249250621 + 222121122 222121570 LTR7C 471 + 0 449 75043 284 1 0 8 0 4 61 1 0 71 2 1 20 chain 444585 chr1 249250621 + 222125827 222131155 L1PA6 6164 + 0 6162 8917 4 1 0 60 1 2 24 6 741 365 6 17 515 1 0 605 6 7 24 0 1 37 0 4 46 0 1 440 0 3 240 7 8 45 0 1 710 2 1 223 0 7 1172 1 0 257 0 1 244 2 0 156 0 2 6 3 99 23 18 0 64 7 0 7 chain 36006 chr1 249250621 + 222131517 222131956 LTR7C 471 + 11 449 74889 430 1 0 8 chain 4984 chr1 249250621 + 222136461 222136627 MER34C 514 - 49 210 195319 6 0 1 34 20 29 7 2 0 24 54 41 19 chain 27072 chr1 249250621 + 222139265 222139698 LTR7Y 441 + 0 441 96031 48 3 11 39 16 8 54 75 84 21 1 0 176 chain 295046 chr1 249250621 + 222139698 222143319 HERVH-int 3825 + 0 3825 13703 532 5 0 18 64 0 20 1 0 10 1 0 24 28 0 15 0 37 41 1 0 59 0 1 7 0 2 12 0 3 660 0 1 239 8 35 299 0 10 321 0 4 199 0 1 363 0 1 47 0 3 106 9 11 39 8 218 260 0 2 225 chain 27377 chr1 249250621 + 222144534 222144975 LTR7Y 441 + 0 441 95031 55 14 6 42 9 0 57 68 84 21 1 0 78 0 2 96 chain 53167 chr1 249250621 + 222145326 222146073 MER4E1 777 + 0 777 56911 25 2 1 84 2 0 6 5 7 32 12 13 163 1 20 82 0 1 57 3 7 47 0 6 86 1 0 4 0 1 135 chain 40444 chr1 249250621 + 222146419 222146870 LTR7 482 - 0 482 68671 185 0 31 266 chain 275676 chr1 249250621 + 222148137 222151848 HERVH-int 3825 - 0 3825 14889 376 7 8 103 150 362 150 63 62 331 4 0 5 0 1 77 0 4 264 1 0 366 8 35 239 0 1 218 15 0 194 0 3 210 0 1 36 1 0 18 0 1 30 2 1 16 2 22 34 24 0 26 24 3 9 1 0 15 28 0 24 2 1 9 1 0 40 68 0 308 0 11 119 1 0 92 chain 38634 chr1 249250621 + 222151862 222152299 LTR7 482 - 12 482 71240 173 0 31 74 0 3 79 1 0 110 chain 26705 chr1 249250621 + 222179178 222180108 L1PA15 4387 - 63 662 97306 8 2 0 46 17 14 23 20 19 13 5 1 15 2 1 23 13 14 17 1 0 26 2 1 41 375 47 55 4 7 21 8 7 37 2 0 30 36 45 88 chain 6703 chr1 249250621 + 222186348 222186428 MADE1 96 + 0 96 179664 49 0 16 31 chain 33941 chr1 249250621 + 222195685 222196143 PRIMA4_LTR 623 - 0 445 77708 70 35 21 88 1 0 55 1 2 76 0 1 132 chain 119072 chr1 249250621 + 222222906 222224331 LTR12C 1709 + 0 1709 31383 210 5 6 84 1 2 348 0 278 184 1 0 4 4 2 106 0 4 24 0 1 110 2 1 112 0 3 230 chain 35340 chr1 249250621 + 222224350 222224796 MLT2A1 477 + 0 477 75751 169 4 1 215 3 37 55 chain 7430 chr1 249250621 + 222236529 222236620 THE1B 368 - 254 360 174578 55 0 15 36 chain 97958 chr1 249250621 + 222236628 222237927 THE1B-int 1605 - 0 1588 37290 95 8 7 103 0 257 150 7 8 27 0 1 492 8 33 57 0 2 257 0 3 30 14 15 51 chain 10627 chr1 249250621 + 222238704 222238832 LOR1a 498 + 337 465 157703 128 chain 18310 chr1 249250621 + 222247411 222247853 LTR72B 493 - 0 493 132051 98 10 0 27 143 169 9 2 1 48 0 36 29 0 3 39 12 9 25 chain 6958 chr1 249250621 + 222250471 222250564 LTR72B 493 + 393 487 177761 34 1 2 58 chain 36057 chr1 249250621 + 222308232 222308647 L1P1 4361 - 1140 1551 74586 24 1 0 26 3 0 361 chain 79025 chr1 249250621 + 222308647 222309564 L1PA5 6144 + 5219 6139 44046 110 0 6 796 3 0 8 chain 515854 chr1 249250621 + 222318844 222325163 L1PA7 6471 + 3 6458 5588 333 0 19 51 0 6 385 1 0 360 0 1 104 0 3 77 0 1 379 0 1 27 0 1 419 0 1 94 1 0 254 0 2 111 16 0 27 0 2 17 0 2 271 18 110 86 2 1 355 1 0 146 0 1 491 20 37 4 0 1 391 1 0 4 0 1 63 0 1 33 0 4 275 1 0 667 2 0 80 0 1 106 0 3 646 chain 10912 chr1 249250621 + 222337408 222337562 L1MA2 4263 + 3721 3872 156545 76 14 11 64 chain 10101 chr1 249250621 + 222348906 222349087 MSTA 426 - 236 426 160081 19 21 28 36 14 16 91 chain 49466 chr1 249250621 + 222350098 222350707 L1PA8 5853 - 969 1578 59298 576 1 2 4 1 0 27 chain 70279 chr1 249250621 + 222350707 222351690 L1PA8 5853 + 4873 5853 48278 137 2 0 11 0 6 87 2 0 364 0 1 85 4 0 5 0 3 41 1 0 45 0 3 5 17 13 15 8 7 39 2 1 19 1 0 93 chain 24135 chr1 249250621 + 222360529 222360889 THE1B 368 + 0 368 109554 169 1 0 32 41 49 57 1 2 59 chain 58361 chr1 249250621 + 222381428 222382134 L1PA6 6164 - 377 1087 53772 280 0 3 92 8 9 80 8 13 72 5 0 161 chain 31771 chr1 249250621 + 222382134 222382500 L1PA6 6164 + 5788 6154 81211 366 chain 40357 chr1 249250621 + 222394484 222394986 LTR19A 502 - 0 502 68795 158 0 1 42 1 0 301 chain 8878 chr1 249250621 + 222415979 222416126 LTR49 580 + 257 416 166237 78 31 43 38 chain 3234 chr1 249250621 + 222424617 222424654 LTR24 460 - 414 451 220348 37 chain 72738 chr1 249250621 + 222453548 222454358 L1PA3long 6157 - 1 811 47147 810 chain 81432 chr1 249250621 + 222470024 222471281 L1PA11 4918 + 3420 4631 42999 65 7 10 164 2 1 385 1 0 65 28 26 96 4 0 81 0 1 17 6 0 62 2 1 13 2 0 67 2 0 13 2 1 20 4 0 9 47 37 13 2 0 11 47 33 20 chain 5720 chr1 249250621 + 222474523 222474714 L1MB3 1562 + 1386 1552 187919 32 37 15 5 2 0 40 57 56 18 chain 30661 chr1 249250621 + 222495715 222496072 L1PA5 6144 + 5777 6135 83103 35 0 1 322 chain 19783 chr1 249250621 + 222506112 222506348 AluY 311 + 60 296 127865 236 chain 17538 chr1 249250621 + 222511211 222511541 MER1B 344 - 0 344 134159 59 24 21 31 0 2 11 4 0 86 35 38 51 15 31 14 chain 260505 chr1 249250621 + 222524903 222527746 L1PA3long 6157 - 1522 4369 15668 690 0 4 2153 chain 137825 chr1 249250621 + 222527746 222529250 L1PA3long 6157 + 4653 6157 26494 1504 chain 32876 chr1 249250621 + 222542581 222542978 MER48 407 - 0 403 79404 237 0 6 129 1 0 4 0 1 26 chain 26143 chr1 249250621 + 222553441 222553786 THE1B 368 - 0 368 99432 67 0 11 98 3 1 22 1 0 110 0 15 44 chain 165228 chr1 249250621 + 222556117 222557965 L1PA4 6152 - 7 1881 22623 12 0 17 77 0 1 1687 0 8 72 chain 196832 chr1 249250621 + 222568689 222570860 L1PA3long 6157 + 3987 6157 19438 684 1 0 1486 chain 6404 chr1 249250621 + 222579727 222579803 L1PA8 5853 - 6 82 181994 76 chain 261364 chr1 249250621 + 222579813 222582874 L1P2 5180 + 2089 5178 15626 112 0 1 120 1 0 112 0 3 178 0 2 560 0 1 63 0 2 255 0 18 841 0 4 354 0 1 371 1 0 49 1 0 38 1 0 4 chain 66495 chr1 249250621 + 222599674 222601115 L1PB3 3668 + 6 1100 49872 12 1 0 9 1 0 27 2 0 9 13 12 27 2 0 7 15 3 13 25 12 58 0 4 31 1 5 29 42 18 55 0 1 143 14 15 32 1 0 24 0 1 150 0 1 14 4 14 134 343 28 62 25 28 116 chain 23363 chr1 249250621 + 222630226 222630576 MSTA 426 + 4 382 113851 36 0 8 36 2 0 24 0 21 24 1 5 46 7 5 18 17 16 139 chain 26759 chr1 249250621 + 222632236 222632621 MSTA 426 + 2 408 97128 94 12 33 76 0 2 29 18 16 156 chain 3986 chr1 249250621 + 222635236 222635289 L1MA4 2864 + 2746 2797 207594 20 2 0 31 chain 3515 chr1 249250621 + 222638346 222638385 tRNA-Thr-ACA 39 + 0 39 215152 39 chain 1691 chr1 249250621 + 222659900 222660145 MER1A 529 - 39 287 124192 19 27 28 137 5 6 9 0 1 48 chain 1680 chr1 249250621 + 222660192 222660296 SVA_D 2077 + 6 105 139608 4 1 0 6 1 0 6 1 0 6 1 0 9 1 0 68 chain 175690 chr1 249250621 + 222660308 222662721 SVA_D 2077 + 0 2073 21375 13 1 0 6 1 0 3 1 0 12 0 5 730 40 0 134 3 0 13 3 1 16 23 28 5 0 1 24 1 0 45 0 2 43 321 17 85 49 0 169 0 49 672 chain 646 chr1 249250621 + 222661075 222661115 SVA_D 2077 + 809 849 139608 40 chain 2766 chr1 249250621 + 222661425 222661488 SVA_D 2077 + 1130 1193 79810 63 chain 16830 chr1 249250621 + 222661520 222661732 SVA_F 1814 + 893 1214 136041 55 0 15 60 1 79 34 1 18 24 1 0 36 chain 2151 chr1 249250621 + 222661831 222661880 SVA_D 2077 + 1310 1359 79810 49 chain 1132 chr1 249250621 + 222662767 222662931 MER1A 529 - 291 444 124192 114 9 10 14 5 0 8 7 0 7 chain 87674 chr1 249250621 + 222673076 222674143 MER11B 1079 + 0 1079 40503 309 2 19 55 0 1 388 8 2 305 chain 21353 chr1 249250621 + 222686359 222686640 AluSp 311 - 25 309 122675 79 1 2 138 12 14 51 chain 20908 chr1 249250621 + 222699079 222699339 AluSz6 309 + 21 281 124252 260 chain 6583 chr1 249250621 + 222722124 222722724 MLT1A0 366 - 74 364 180593 35 458 149 58 34 33 15 chain 4658 chr1 249250621 + 222771511 222771566 L1PA15 4387 - 344 399 198980 55 chain 35312 chr1 249250621 + 222782069 222782532 THE1B-int 1605 - 1115 1605 75779 36 4 29 43 3 5 377 chain 25608 chr1 249250621 + 222782532 222782894 THE1B 368 - 0 365 101685 159 9 7 8 0 2 18 3 2 62 2 3 65 0 5 24 2 0 10 chain 5027 chr1 249250621 + 222852858 222852922 MIR 256 - 32 97 194850 22 0 1 42 chain 47879 chr1 249250621 + 222862204 222863484 Tigger3b 1229 + 333 1165 60570 47 0 2 41 10 11 4 1 0 81 8 0 10 0 4 9 0 20 9 2 0 3 12 0 7 0 3 13 0 1 28 473 1 66 17 11 4 1 0 10 0 12 33 16 13 169 1 0 12 5 6 9 0 1 6 4 0 13 16 17 92 0 16 48 chain 4812 chr1 249250621 + 222889927 222889997 MER58A 224 + 47 115 197216 36 0 1 4 3 0 27 chain 24401 chr1 249250621 + 222899786 222900077 AluSp 311 + 10 300 108067 114 1 0 176 chain 12563 chr1 249250621 + 222905560 222905697 L1PA3long 6157 - 2 139 149998 137 chain 31780 chr1 249250621 + 222935685 222936060 L1PA5 6144 + 5751 6128 81200 181 0 3 54 1 0 139 chain 209887 chr1 249250621 + 222936984 222939450 L1PA6 6164 + 3662 6156 18498 1017 9 7 567 0 1 61 1 0 5 0 1 510 0 1 143 17 45 136 chain 8394 chr1 249250621 + 222950979 222951083 Tigger3c 601 - 24 128 168889 104 chain 6062 chr1 249250621 + 222966889 222966964 L1MA7 2200 + 1874 1949 184727 75 chain 2556 chr1 249250621 + 222969014 222969063 MER52A 1651 + 896 936 232408 20 10 1 19 chain 3092 chr1 249250621 + 222969085 222969125 MER52A 1651 + 790 830 223076 40 chain 5842 chr1 249250621 + 222977742 222977816 MIR 256 - 88 163 186750 39 0 1 35 chain 9418 chr1 249250621 + 222995303 222995448 THE1D 372 + 224 360 163472 86 15 7 23 1 0 20 chain 38213 chr1 249250621 + 223026585 223027174 L1MA5A 2387 + 1734 2300 71821 43 4 9 130 0 6 108 1 3 37 2 0 37 1 0 48 2 0 60 46 15 41 0 1 23 1 0 5 chain 16818 chr1 249250621 + 223027582 223027911 THE1D 372 - 28 372 136071 50 1 0 56 55 72 27 0 1 52 37 35 51 chain 54838 chr1 249250621 + 223030673 223031339 L1PA10 4194 + 3486 4150 55811 262 1 0 187 0 2 178 6 3 32 chain 462476 chr1 249250621 + 223043136 223048283 L1PA4 6152 - 4 5186 8303 1796 0 4 511 0 2 424 0 12 233 1 2 964 0 1 380 2 1 291 0 23 57 7 0 481 chain 23465 chr1 249250621 + 223054529 223054829 AluSp 311 - 4 303 113289 226 14 13 60 chain 30000 chr1 249250621 + 223060822 223061139 AluYb8 318 - 1 318 84813 317 chain 99574 chr1 249250621 + 223075688 223076796 L1PA4 6152 + 5032 6152 36888 272 0 4 553 0 3 277 0 5 6 chain 40882 chr1 249250621 + 223079711 223080261 MER41A 554 + 3 545 68047 51 16 15 99 0 1 246 1 0 23 11 3 60 0 1 43 chain 6914 chr1 249250621 + 223085195 223085283 U13_ 108 - 13 101 178080 88 chain 31886 chr1 249250621 + 223090182 223090610 LTR3B 427 + 0 423 81034 305 3 0 27 19 13 22 0 5 27 1 0 24 chain 33483 chr1 249250621 + 223092529 223092955 LTR3B 427 + 0 423 78436 75 0 2 108 0 1 119 3 0 27 6 3 88 chain 309154 chr1 249250621 + 223133093 223137217 L1PA8A 6298 + 2450 6291 13039 60 13 6 62 0 4 173 0 4 69 0 1 133 3 7 113 0 1 315 3 0 15 0 4 24 0 4 260 2 0 483 0 3 11 2 1 232 316 0 163 0 1 89 1 5 497 0 1 289 8 11 17 1 2 60 3 6 5 1 0 131 3 4 141 0 7 282 4 5 140 chain 138952 chr1 249250621 + 223150888 223152453 L1PA4 6152 - 9 1591 26317 22 0 1 529 8 16 33 0 6 241 0 1 77 0 1 655 chain 27307 chr1 249250621 + 223190960 223191308 THE1A 353 - 0 353 95256 155 2 1 60 0 6 21 1 0 25 0 1 84 chain 39483 chr1 249250621 + 223197737 223198189 LTR7 482 - 0 482 70041 112 1 0 91 1 32 247 chain 288857 chr1 249250621 + 223199447 223203041 HERVH-int 3825 - 9 3825 14095 478 8 218 294 63 62 13 2 1 4 0 1 395 0 4 630 8 35 223 0 2 14 0 1 218 15 0 407 0 1 36 1 0 49 2 1 9 59 0 23 7 6 31 11 61 19 1 0 9 2 1 28 0 1 9 5 0 309 0 11 212 chain 39890 chr1 249250621 + 223203043 223203498 LTR7 482 - 0 482 69471 185 0 31 214 7 3 49 chain 12866 chr1 249250621 + 223203498 223203654 MER4A1 472 - 314 472 148775 56 0 2 100 chain 45101 chr1 249250621 + 223205928 223206476 MER41A 554 + 0 554 62934 468 0 5 34 1 2 45 chain 17298 chr1 249250621 + 223223153 223223379 MER57A1 433 + 20 251 134790 44 7 12 175 chain 146089 chr1 249250621 + 223230667 223232833 MER57-int 2662 - 13 2088 25149 24 3 0 33 5 0 8 2 1 24 4 1 9 1 0 6 8 6 12 9 7 13 12 0 32 5 0 37 18 12 81 3 1 10 1 0 209 0 1 138 11 15 60 5 6 341 4 8 155 1 0 31 0 2 316 56 1 13 4 5 20 1 2 4 1 0 59 1 0 52 2 1 18 1 2 180 4 0 119 chain 38199 chr1 249250621 + 223243208 223243751 MER41A 554 + 0 554 71836 42 0 1 25 24 25 91 1 2 45 7 9 188 1 2 38 0 5 81 chain 5745 chr1 249250621 + 223246585 223246737 MER20 218 + 52 203 187686 10 1 0 25 3 1 30 47 48 19 1 2 16 chain 127665 chr1 249250621 + 223273142 223274709 THE1B-int 1605 + 0 1600 28655 432 0 25 280 0 9 138 1 0 716 chain 6380 chr1 249250621 + 223275306 223275379 THE1B 368 + 295 368 182178 73 chain 2509 chr1 249250621 + 223290069 223290150 LTR12C 1709 - 832 872 233031 18 43 2 20 chain 3890 chr1 249250621 + 223291192 223291236 MER4B 649 - 21 65 209021 44 chain 16865 chr1 249250621 + 223292771 223293012 MER4D1 891 + 0 238 135927 41 0 1 10 5 6 17 3 2 34 4 0 127 chain 4714 chr1 249250621 + 223302221 223302277 MER51A 677 + 605 661 198351 56 chain 18442 chr1 249250621 + 223325686 223325950 MSTA-int 1630 + 0 261 131667 115 1 5 29 12 5 107 chain 9110 chr1 249250621 + 223325953 223326064 MSTB 430 + 319 430 165012 111 chain 531920 chr1 249250621 + 223340996 223346975 L1PA3long 6157 + 0 6152 3969 152 0 1 22 1 40 482 1 2 69 8 136 345 2 1 812 1 2 143 0 4 340 0 1 145 1 0 93 3 1 2049 0 2 1310 chain 28237 chr1 249250621 + 223356982 223357335 HSMAR1 1287 - 0 353 92170 353 chain 22363 chr1 249250621 + 223372889 223373151 L1PA2 6032 - 2 258 118655 156 7 1 99 chain 26295 chr1 249250621 + 223373421 223373717 L1PA4 6152 - 1 297 98847 296 chain 11950 chr1 249250621 + 223391304 223391558 MSTB1 431 + 173 431 152407 33 1 0 11 6 12 38 4 5 48 34 31 20 0 1 28 1 0 4 11 12 15 chain 34402 chr1 249250621 + 223424908 223425290 L1PA5 6144 - 312 694 77052 382 chain 25763 chr1 249250621 + 223425290 223425571 L1PA5 6144 + 5863 6144 101029 281 chain 538870 chr1 249250621 + 223451430 223457582 L1PA5 6144 + 3 6143 3010 627 2 0 99 1 0 183 5 0 514 0 1 4 25 8 353 3 5 3144 1 11 26 1 0 335 0 1 829 chain 17579 chr1 249250621 + 223457899 223458288 L1MA5A 2387 + 1944 2296 134059 49 51 50 26 11 10 29 2 1 15 9 3 28 2 0 28 7 6 30 3 0 13 22 0 64 chain 74370 chr1 249250621 + 223476884 223477754 MER11D 897 - 0 897 46329 138 9 10 139 1 27 583 chain 25301 chr1 249250621 + 223487860 223488220 THE1B 368 + 0 368 103223 146 3 0 21 0 1 30 35 45 125 chain 42282 chr1 249250621 + 223490342 223490878 MER41A 554 + 0 554 66294 387 10 12 38 0 16 101 chain 80254 chr1 249250621 + 223491198 223492052 L1HS 6032 - 0 854 43488 854 chain 70673 chr1 249250621 + 223492052 223492804 L1HS 6032 + 4424 5176 47909 752 chain 34421 chr1 249250621 + 223500013 223500564 L1PB3 3668 + 3016 3562 77029 66 0 2 142 16 19 45 1 0 101 1 0 54 66 59 10 0 1 13 3 1 33 chain 39388 chr1 249250621 + 223508057 223508697 L1PB1 5432 - 10 588 70185 18 1 0 13 1 0 21 1 0 24 2 0 15 2 0 4 1 0 28 44 4 12 7 6 41 1 0 17 1 0 47 0 1 3 2 0 9 2 0 3 2 0 10 1 0 8 1 0 21 3 0 14 1 0 64 4 5 31 2 1 158 chain 550402 chr1 249250621 + 223539901 223546029 L1PA3long 6157 - 15 6151 1393 71 9 13 47 1 3 4593 4 1 222 0 3 585 0 1 449 0 1 147 chain 555622 chr1 249250621 + 223568876 223574899 L1PA2 6032 - 0 6030 759 13 2 0 511 0 1 321 0 4 2042 0 3 2429 0 1 705 chain 62702 chr1 249250621 + 223595631 223596382 MER4E 760 - 5 760 51588 370 0 4 215 1 0 148 0 1 17 chain 17468 chr1 249250621 + 223601031 223601402 L1MB3 1562 - 11 345 134333 28 1 0 15 3 0 5 1 4 39 94 59 44 7 6 134 chain 540690 chr1 249250621 + 223620333 223626361 L1PA3long 6157 + 0 6156 2709 152 0 1 555 2 1 72 1 129 566 0 1 1213 1 0 620 1 0 1789 0 1 1056 chain 21310 chr1 249250621 + 223660154 223660526 THE1D 372 - 0 372 122829 81 0 2 64 1 0 25 29 34 34 0 4 25 57 47 56 chain 25147 chr1 249250621 + 223683679 223684043 THE1D 372 - 0 372 104016 32 1 0 136 7 24 4 0 1 12 0 1 99 23 11 37 0 2 13 chain 27731 chr1 249250621 + 223691265 223691739 L1PB 1623 + 1141 1575 93930 140 0 2 13 23 15 135 1 0 7 2 1 30 1 0 4 3 0 13 4 0 15 1 0 6 54 31 22 chain 6769 chr1 249250621 + 223701921 223702041 MSTD 398 - 271 398 179180 17 27 34 48 0 1 8 1 0 19 chain 37073 chr1 249250621 + 223706358 223706768 L1PA3long 6157 - 0 413 73425 127 0 3 283 chain 3693 chr1 249250621 + 223823080 223823122 MER66C 541 - 123 165 212040 42 chain 43919 chr1 249250621 + 223832588 223833133 MLT2A2 560 - 0 558 64313 39 0 3 105 0 11 222 7 6 172 chain 10070 chr1 249250621 + 223848905 223849030 L1MB3 1562 + 787 912 160221 125 chain 3788 chr1 249250621 + 223857264 223857540 L1MB7 1623 + 1248 1485 210540 17 141 125 33 1 0 6 54 33 17 1 0 6 chain 24988 chr1 249250621 + 223877135 223877437 AluY 311 + 9 307 104865 69 6 3 52 1 0 174 chain 5570 chr1 249250621 + 223877752 223877816 U6 107 + 0 64 189370 64 chain 4191 chr1 249250621 + 223880723 223880776 LTR37B 484 - 192 245 204678 53 chain 23340 chr1 249250621 + 223885279 223885562 AluSp 311 + 15 298 113980 283 chain 3872 chr1 249250621 + 223899756 223899838 MIRb 242 + 107 187 209270 33 25 23 24 chain 14150 chr1 249250621 + 223916887 223917098 MER47A 366 + 59 266 144040 91 15 14 21 5 2 79 chain 14804 chr1 249250621 + 223917955 223918158 MER30 238 + 0 238 141922 16 7 21 63 0 24 75 3 0 39 chain 41761 chr1 249250621 + 223919887 223920455 MER41A 554 - 0 554 66949 24 7 8 98 12 16 51 21 1 188 0 1 167 chain 50438 chr1 249250621 + 223927943 223928516 LTR10C 591 - 0 574 58685 90 1 2 482 chain 158658 chr1 249250621 + 223954894 223956622 L1PA3long 6157 - 0 1733 23510 4 0 1 1309 0 2 46 0 2 369 chain 4183 chr1 249250621 + 223967134 223967186 MER6B 211 - 159 211 204788 52 chain 16072 chr1 249250621 + 224003435 224003698 Tigger3a 397 + 39 362 138143 9 0 1 21 30 88 99 2 0 76 8 11 18 chain 7464 chr1 249250621 + 224017822 224018052 Tigger4a 237 - 0 237 174383 44 7 0 6 1 0 4 3 0 7 16 33 10 13 14 48 38 14 11 2 26 20 chain 3291 chr1 249250621 + 224041152 224041191 MER3 215 - 166 205 219151 39 chain 453184 chr1 249250621 + 224052640 224058702 L1PA8 5853 - 93 5803 8643 19 2 1 50 13 12 68 4 2 46 1 0 195 0 2 183 5 9 154 9 8 277 1 0 208 26 26 163 2 0 127 1 0 104 0 1 138 0 3 21 1 2 461 1 2 83 6 1 456 0 4 142 307 0 305 1 5 147 0 9 29 0 1 265 23 2 272 9 10 190 1 0 210 1 0 77 8 23 235 9 0 207 0 27 142 0 3 239 42 19 64 21 9 194 49 13 13 1 0 10 2 0 22 chain 41079 chr1 249250621 + 224077995 224078656 LTR9B 643 + 0 643 67797 133 0 2 65 4 9 5 0 2 172 5 6 35 71 41 30 7 0 10 0 10 71 13 12 40 chain 57001 chr1 249250621 + 224079940 224081006 MER4E1 777 + 0 772 54529 17 5 0 24 1 0 155 7 5 4 1 0 127 309 0 158 3 25 28 6 4 9 0 4 212 chain 19030 chr1 249250621 + 224093664 224093959 LTR39 781 - 307 604 130034 30 14 23 138 23 16 90 chain 2857 chr1 249250621 + 224140787 224140821 LTR41 747 - 121 155 227701 34 chain 85658 chr1 249250621 + 224159958 224161018 MER11B 1079 + 0 1079 41290 266 0 1 49 1 18 49 0 1 386 2 4 138 7 6 146 5 4 11 chain 27663 chr1 249250621 + 224192524 224192914 L1PA6 6164 - 12 398 94174 135 37 38 53 6 1 159 chain 20556 chr1 249250621 + 224196122 224196354 L1PA4 6152 + 5911 6143 125450 232 chain 76561 chr1 249250621 + 224212107 224213008 L1PA7 6471 - 518 1430 45180 83 0 4 145 1 4 17 0 2 81 0 3 320 1 0 253 chain 41999 chr1 249250621 + 224213015 224213514 L1PA7 6471 + 5969 6465 66624 338 2 1 151 2 0 6 chain 18673 chr1 249250621 + 224232643 224232859 AluY 311 + 82 299 131020 50 0 1 166 chain 37625 chr1 249250621 + 224274231 224274735 LTR10F 562 + 0 562 72654 114 0 58 60 25 21 13 9 15 190 2 0 91 chain 140266 chr1 249250621 + 224287877 224289434 SVA_D 2077 + 0 2077 26106 23 9 2 662 0 40 174 0 487 689 chain 13030 chr1 249250621 + 224290598 224290754 L1PB3 3668 - 1195 1351 148126 156 chain 8639 chr1 249250621 + 224291622 224291734 L1PB3 3668 + 3068 3180 167545 112 chain 8008 chr1 249250621 + 224299137 224299237 Tigger1 2417 - 623 720 171004 32 3 0 65 chain 13192 chr1 249250621 + 224364838 224364983 L1PA4 6152 + 5996 6141 147498 145 chain 24745 chr1 249250621 + 224394981 224395280 AluSx1 309 + 5 304 106198 299 chain 11615 chr1 249250621 + 224429757 224429995 L1MB3 1562 + 1344 1555 153828 7 1 0 40 1 2 28 1 0 4 40 15 84 13 12 19 chain 10376 chr1 249250621 + 224453303 224453483 MSTD 398 + 0 185 158798 123 15 40 8 20 0 14 chain 3453 chr1 249250621 + 224457087 224457125 HY4 93 - 45 83 216124 38 chain 5094 chr1 249250621 + 224485121 224485304 L1MB3 1562 + 1383 1555 194142 37 88 78 26 8 7 24 chain 5373 chr1 249250621 + 224493092 224493156 U6 107 + 11 78 191271 32 0 3 32 chain 12962 chr1 249250621 + 224515777 224515927 L1PA7 6471 - 4 153 148381 9 1 0 140 chain 76001 chr1 249250621 + 224527532 224528500 LTR5_Hs 974 + 0 974 45479 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 128887 chr1 249250621 + 224536922 224538359 SVA_B 1603 - 0 1559 28337 443 0 3 141 0 82 56 5 41 246 0 1 546 chain 106982 chr1 249250621 + 224539358 224540761 LTR12C 1709 - 2 1709 34977 62 0 4 99 0 102 28 5 9 175 0 4 68 0 47 272 1 0 35 0 119 215 3 4 83 0 43 36 0 9 10 0 16 9 34 0 223 10 0 35 chain 23971 chr1 249250621 + 224541022 224541309 AluSp 311 - 22 310 110501 20 3 4 264 chain 16649 chr1 249250621 + 224546172 224546394 MER30 238 + 0 238 136534 98 12 0 11 4 32 97 chain 23237 chr1 249250621 + 224554389 224554681 AluY 311 + 11 300 114506 53 2 0 69 2 0 115 1 2 50 chain 5343 chr1 249250621 + 224557675 224557772 L1MA3 4352 + 4262 4352 191613 20 1 0 6 1 0 26 1 0 14 6 2 22 chain 22006 chr1 249250621 + 224559380 224559638 AluSp 311 + 18 276 120202 258 chain 23673 chr1 249250621 + 224652813 224653086 AluSp 311 - 14 287 112185 273 chain 28050 chr1 249250621 + 224659591 224659966 L1MA3 4352 - 439 805 92827 8 2 0 163 0 1 6 15 7 181 chain 25031 chr1 249250621 + 224660001 224660477 L1PB1 5432 + 4982 5422 104631 116 6 7 9 7 0 24 8 6 13 6 2 9 2 0 52 19 17 45 1 0 13 1 0 7 16 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 11242 chr1 249250621 + 224661166 224661321 L1M1 2793 + 2531 2685 155249 89 0 1 7 1 0 45 1 0 12 chain 24448 chr1 249250621 + 224662450 224662774 AluY 311 + 2 310 107817 6 0 1 114 1 0 11 30 14 162 chain 115402 chr1 249250621 + 224666773 224668656 THE1B-int 1605 - 6 1605 32641 59 322 0 120 6 10 538 1 0 108 9 0 7 8 17 28 7 8 26 0 3 219 1 26 146 0 2 135 1 0 37 8 11 26 0 4 25 3 1 43 chain 20616 chr1 249250621 + 224671888 224672144 AluY 311 + 38 296 125237 88 0 1 149 5 6 14 chain 34197 chr1 249250621 + 224678434 224678864 MER57A1 433 - 0 433 77355 138 0 1 13 1 0 4 0 1 195 2 4 77 chain 14306 chr1 249250621 + 224705192 224705474 L1PB1 5432 - 2 260 143543 5 1 0 7 1 0 14 1 0 12 2 1 21 1 0 24 2 0 14 1 0 5 3 1 15 8 0 15 21 17 42 1 0 16 2 1 48 chain 11261 chr1 249250621 + 224706952 224707157 MLT2B1 522 + 179 408 155192 17 1 2 15 25 14 24 13 47 110 chain 5011 chr1 249250621 + 224714328 224714389 MLT1A0 366 + 289 350 195014 61 chain 25542 chr1 249250621 + 224723986 224724281 AluSp 311 - 5 300 102038 295 chain 51452 chr1 249250621 + 224724689 224725413 MER4A 717 + 0 717 58004 35 5 6 80 4 0 8 10 0 37 4 5 192 0 11 120 13 5 74 0 1 30 1 2 111 chain 24529 chr1 249250621 + 224738415 224738691 L1PA4 6152 - 9 285 107379 112 1 0 27 0 1 136 chain 39543 chr1 249250621 + 224738691 224739139 L1PA4 6152 + 5410 5856 69966 298 7 5 143 chain 16125 chr1 249250621 + 224742181 224742806 MER2 342 + 80 342 137981 60 347 0 27 5 11 68 9 7 40 29 9 40 chain 88661 chr1 249250621 + 224754074 224755160 L1PA7 6471 - 2 1089 40126 10 2 0 143 17 18 27 14 16 384 0 1 249 1 0 239 chain 15470 chr1 249250621 + 224757981 224758219 L1PA16 3655 - 36 253 139989 16 5 0 7 6 0 11 17 7 176 chain 18131 chr1 249250621 + 224768267 224768524 AluSc5 308 + 20 296 132517 20 1 0 96 8 5 6 0 3 75 4 24 47 chain 23119 chr1 249250621 + 224773898 224774242 THE1B 368 - 0 368 115045 118 46 56 22 1 0 113 0 15 44 chain 5286 chr1 249250621 + 224784508 224784571 MER21A 919 + 59 122 192152 63 chain 62552 chr1 249250621 + 224785780 224786603 Tigger1 2417 + 1545 2383 51651 22 2 1 684 2 0 58 0 2 34 3 19 18 chain 5256 chr1 249250621 + 224789386 224789449 MLT1B 390 + 291 354 192447 63 chain 13762 chr1 249250621 + 224791083 224791270 MER34B 572 - 374 572 145399 111 1 0 42 1 13 32 chain 39029 chr1 249250621 + 224795994 224796453 LTR2 463 - 0 463 70695 94 0 1 238 0 3 127 chain 13833 chr1 249250621 + 224801227 224801920 MSTA 426 + 18 426 145118 95 1 19 15 178 179 61 304 0 39 chain 15373 chr1 249250621 + 224817009 224817204 MER4E1 777 + 582 777 140285 30 3 2 96 0 1 66 chain 23355 chr1 249250621 + 224822687 224823052 THE1D 372 - 0 366 113903 60 0 2 71 1 2 13 45 44 9 2 0 10 0 1 154 chain 4532 chr1 249250621 + 224848138 224848204 LOR1-int 1871 - 723 784 200436 18 1 0 34 4 0 9 chain 5007 chr1 249250621 + 224850699 224850778 MADE1 96 + 2 96 195050 34 8 23 37 chain 46575 chr1 249250621 + 224873713 224874235 L1PA5 6144 - 1 525 61542 10 1 3 511 chain 5167 chr1 249250621 + 224971095 224971156 LOR1a 498 - 199 260 193377 61 chain 82694 chr1 249250621 + 224987290 224988182 L1PA3long 6157 + 5258 6157 42461 739 0 7 153 chain 82057 chr1 249250621 + 225009173 225010216 MER11C 1089 - 15 1089 42741 14 9 8 67 0 3 190 0 8 185 9 10 252 1 18 52 0 3 264 chain 136583 chr1 249250621 + 225012185 225014127 L1PB2 3958 - 120 2035 26720 22 7 5 36 1 0 22 2 0 29 0 1 42 1 0 64 2 1 62 0 1 4 3 4 93 4 0 13 2 0 62 4 0 14 1 0 54 2 0 16 2 0 5 0 2 134 11 12 216 0 3 180 0 2 149 5 1 83 0 1 16 25 12 75 0 1 108 13 14 335 11 9 12 chain 26721 chr1 249250621 + 225027637 225028029 LTR7 482 - 5 482 97252 81 10 16 72 0 1 12 14 41 29 0 1 60 13 63 101 chain 259908 chr1 249250621 + 225029842 225033383 HERVH-int 3825 - 0 3825 15708 63 35 19 132 0 1 275 0 10 5 0 200 156 5 14 660 1 0 5 11 12 98 0 3 393 5 6 153 4 0 150 1 0 41 9 0 200 15 0 30 13 0 58 0 1 362 1 0 28 54 146 24 5 4 6 1 0 14 57 83 93 15 16 20 26 25 36 0 2 281 chain 30689 chr1 249250621 + 225033393 225033784 LTR7 482 - 8 482 83053 168 0 1 40 9 41 73 0 50 101 chain 11286 chr1 249250621 + 225034188 225034445 MER4D 903 + 3 267 155110 23 1 0 8 94 101 5 0 1 4 1 0 45 0 1 76 chain 3340 chr1 249250621 + 225036813 225036868 L1MA8 2339 + 2213 2265 218221 21 3 1 22 1 0 8 chain 14017 chr1 249250621 + 225052559 225052753 AluSp 311 - 31 221 144514 130 10 14 14 8 0 32 chain 16382 chr1 249250621 + 225054937 225055290 Tigger4b 360 - 0 359 137252 46 12 11 70 88 102 11 2 0 11 4 0 80 2 1 27 chain 47573 chr1 249250621 + 225064135 225064810 L1PB2 3958 + 2959 3647 60787 98 0 1 30 2 0 200 0 2 19 2 0 51 0 3 8 0 6 55 11 9 10 2 0 20 0 3 10 3 8 53 3 4 4 0 1 63 1 0 30 chain 2599 chr1 249250621 + 225068800 225068896 LTR54B 464 - 345 444 231706 13 14 16 12 5 0 13 5 10 14 7 8 13 chain 13049 chr1 249250621 + 225081268 225081439 THE1B 368 - 196 368 148034 58 5 6 108 chain 4755 chr1 249250621 + 225081530 225081589 MER89 557 - 498 557 197852 59 chain 5856 chr1 249250621 + 225085019 225085093 MLT1A0 366 - 292 366 186631 74 chain 56835 chr1 249250621 + 225115124 225115854 L1PA8 5853 + 5130 5853 54637 434 1 0 44 2 0 71 1 0 9 14 13 43 1 0 16 1 0 93 chain 531392 chr1 249250621 + 225128225 225134320 L1PA4 6152 - 1 6149 4032 243 0 3 819 1 12 378 0 1 343 0 4 437 1 2 397 1 2 121 0 9 1057 0 4 197 1 0 958 0 3 429 1 2 203 4 0 327 1 21 176 chain 81322 chr1 249250621 + 225157327 225158386 MER11B 1079 + 0 1064 43032 182 0 6 76 3 0 155 12 16 22 0 3 103 34 32 22 6 8 147 8 2 143 0 1 146 chain 140563 chr1 249250621 + 225162507 225164070 L1P1 4361 - 296 1860 26061 1077 0 1 486 chain 101922 chr1 249250621 + 225164070 225165199 L1PA3long 6157 + 5027 6157 36237 872 1 2 256 chain 13790 chr1 249250621 + 225168545 225168702 L1PA7 6471 + 6313 6470 145303 157 chain 55094 chr1 249250621 + 225168716 225169454 L1PB 1623 - 788 1525 55648 47 1 13 291 1 0 75 2 0 134 7 6 77 7 4 16 4 1 54 1 0 5 1 0 10 1 0 4 chain 47206 chr1 249250621 + 225169532 225170089 LTR22 571 + 0 556 61039 305 2 1 250 chain 157851 chr1 249250621 + 225171060 225173171 L1PB1 5432 + 3267 5303 23619 34 0 1 81 0 6 331 0 8 486 0 1 394 78 0 157 0 3 169 1 0 161 5 6 9 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 2 1 43 1 0 15 4 0 7 chain 32609 chr1 249250621 + 225173329 225173786 L1M1 2793 + 1012 1477 79837 56 7 11 16 3 4 18 0 4 51 0 2 6 1 0 73 8 5 104 0 1 114 chain 14891 chr1 249250621 + 225185488 225185652 L1PA3long 6157 + 5804 5968 141658 164 chain 4721 chr1 249250621 + 225188516 225188577 L1MDa 1598 - 996 1056 198269 35 1 0 25 chain 501875 chr1 249250621 + 225195629 225202113 L1PA7 6471 - 2 6468 6731 557 6 19 29 0 1 33 3 12 10 159 0 99 3 0 60 49 0 31 0 4 231 0 4 147 1 2 4 1 0 484 0 10 245 5 6 948 6 4 35 11 10 293 9 172 131 0 7 186 2 1 32 40 21 533 0 1 211 11 1 616 13 11 182 6 8 131 0 11 66 0 1 464 0 2 18 20 19 363 chain 40521 chr1 249250621 + 225203301 225203952 LTR66 600 - 26 600 68562 5 0 1 85 19 0 62 0 1 7 0 6 68 71 0 196 0 21 69 4 0 33 13 1 19 chain 98475 chr1 249250621 + 225220734 225222217 L1PA14 3548 - 92 1568 37166 42 1 0 14 3 2 11 1 0 8 55 48 110 1 0 58 9 9 17 1 0 6 2 0 13 6 2 111 16 12 40 2 0 13 9 7 116 0 8 45 0 1 74 1 0 145 26 32 38 0 1 187 0 2 58 16 17 142 1 2 85 chain 47272 chr1 249250621 + 225223688 225224575 LTR19B 566 - 0 566 60989 52 0 1 35 1 0 38 322 0 350 0 1 89 chain 19132 chr1 249250621 + 225227402 225227603 AluYa5 310 + 104 305 129736 201 chain 530399 chr1 249250621 + 225243239 225249353 L1PA4 6152 - 0 6142 4141 155 19 20 598 1 3 74 0 4 669 1 0 274 0 4 669 1 0 983 0 5 1108 0 1 55 4 16 782 3 4 156 6 5 437 0 1 119 chain 25123 chr1 249250621 + 225256539 225256806 AluYa5 310 + 37 304 104162 267 chain 29128 chr1 249250621 + 225261693 225262000 AluYa5 310 - 3 310 88419 307 chain 16103 chr1 249250621 + 225264501 225264700 L1PA6 6164 - 2 202 138046 151 2 0 5 1 4 40 chain 8147 chr1 249250621 + 225264700 225264791 L1PA6 6164 + 5869 5960 170248 91 chain 483900 chr1 249250621 + 225289609 225295076 L1PA4 6152 - 14 5505 7590 134 0 1 23 0 1 602 1 2 193 0 1 1159 0 1 72 0 1 70 0 4 1815 2 7 466 0 1 129 0 1 365 0 3 365 0 4 71 chain 19336 chr1 249250621 + 225295384 225295623 L1MA3 4352 - 652 891 129122 239 chain 41389 chr1 249250621 + 225295623 225296173 MLT2A2 560 + 0 560 67424 168 31 30 202 2 13 147 chain 170900 chr1 249250621 + 225313992 225315956 L1HS 6032 - 2586 4553 21945 65 6 7 1818 0 2 75 chain 233639 chr1 249250621 + 225315956 225318530 L1PA3long 6157 + 3582 6155 17105 1750 0 1 4 1 0 524 1 0 294 chain 330027 chr1 249250621 + 225320435 225325022 L1PA11 4918 - 289 4915 12201 18 62 47 10 1 0 15 39 22 9 1 0 20 1 0 10 5 3 68 3 1 9 1 0 21 1 0 40 6 5 128 5 0 247 0 1 289 0 1 214 1 0 72 0 6 6 5 0 442 1 4 489 12 65 115 7 19 55 1 6 357 2 3 37 11 10 10 13 0 70 28 35 183 3 6 75 1 0 4 1 3 179 1 0 140 0 1 189 0 1 72 2 1 5 0 1 33 3 6 396 1 4 133 1 0 5 2 0 23 19 17 20 27 43 31 7 4 33 2 0 39 chain 28796 chr1 249250621 + 225344408 225344716 AluYa5 310 - 3 310 89912 181 1 0 126 chain 103422 chr1 249250621 + 225349018 225350556 L1MA2 4263 - 151 1666 35894 8 1 0 39 23 18 82 2 1 10 0 5 15 0 1 123 7 4 58 0 1 16 1 2 33 0 1 33 1 0 11 6 7 53 1 0 7 2 0 272 1 0 138 11 31 52 59 10 103 0 1 63 5 6 43 0 1 111 0 7 101 0 1 47 chain 524912 chr1 249250621 + 225355890 225361965 L1PA4 6152 + 10 6143 4692 112 7 21 784 1 5 451 0 24 184 1 5 32 3 2 689 0 1 1366 0 4 274 0 4 670 0 5 1169 1 0 331 chain 21113 chr1 249250621 + 225364261 225364591 THE1B 368 + 0 361 123521 44 7 39 20 0 1 62 1 0 9 1 0 19 13 15 4 1 0 74 7 6 68 chain 114573 chr1 249250621 + 225364598 225366492 THE1B-int 1605 + 0 1605 32930 413 1 0 10 3 28 257 36 78 156 20 21 67 14 16 317 0 1 13 371 13 17 2 1 197 chain 24436 chr1 249250621 + 225365908 225366261 THE1A 353 - 0 353 107877 28 1 0 111 3 0 5 0 3 4 1 0 10 1 4 47 1 0 32 1 0 23 1 2 84 chain 4147 chr1 249250621 + 225378153 225378202 Tigger7 736 - 620 669 205285 49 chain 415182 chr1 249250621 + 225383744 225389504 L1PB1 5432 - 12 5407 9662 16 1 0 13 1 0 21 2 1 23 2 0 14 8 5 28 18 5 13 1 0 44 1 0 11 7 6 53 15 9 12 1 0 5 0 3 10 0 2 10 9 0 11 0 3 175 0 1 110 2 5 106 0 2 74 4 0 20 34 1 116 6 12 585 2 0 119 0 6 38 1 4 429 308 0 162 0 5 11 0 1 205 12 9 86 3 2 275 0 4 268 0 1 46 0 1 89 1 0 204 0 4 18 0 1 191 0 2 66 1 2 4 1 0 93 0 4 131 0 1 9 11 0 16 0 4 145 19 5 468 17 11 203 0 1 526 chain 62257 chr1 249250621 + 225397436 225399566 L1P3 4156 + 32 2172 13429 219 2 1 67 2 1 102 12 2 429 9 15 24 12 13 56 0 3 765 8 13 141 0 3 67 8 10 61 0 2 146 chain 516870 chr1 249250621 + 225399619 225405719 L1PA5 6144 - 9 6144 5501 189 0 1 651 2 0 604 0 2 1105 0 1 751 0 1 330 0 12 170 0 1 11 3 2 630 1 2 501 9 0 405 13 15 583 3 15 18 3 17 118 chain 57492 chr1 249250621 + 225405729 225407696 L1P3 4156 + 2172 4139 13429 214 1 2 250 5 1 147 6 5 92 0 4 193 0 1 12 0 4 127 41 29 247 1 0 23 12 22 352 3 2 28 1 2 64 3 4 105 16 13 24 chain 2791 chr1 249250621 + 225410060 225410093 LTR12B 2670 - 25 58 228876 33 chain 265288 chr1 249250621 + 225411028 225416499 HERVK22-int 3844 + 1 3844 15426 1045 1 0 7 13 14 12 2 1 119 0 1 25 0 1 153 0 21 159 1 5 711 0 1 218 0 1 54 0 1 9 0 1 119 0 3 142 10 12 6 0 1 204 1 0 72 7 5 18 1 0 38 1 0 20 2 0 36 4 0 11 1 0 41 2025 374 88 16 15 79 chain 55364 chr1 249250621 + 225416973 225417628 L1PA7 6471 + 5813 6470 55482 464 0 3 5 2 0 28 0 1 156 chain 321203 chr1 249250621 + 225421023 225425983 L1PA11 4918 - 289 4897 12547 18 19 13 4 1 0 8 1 0 6 6 0 13 2 0 13 1 0 15 44 31 20 2 1 13 2 0 80 2 13 44 0 6 6 21 18 220 1 0 328 276 19 504 0 1 218 0 4 242 6 4 23 6 9 15 0 1 178 0 1 243 3 5 20 4 7 24 1 0 32 0 1 62 0 3 52 8 13 264 0 1 229 1 0 4 0 68 74 234 2 78 16 10 105 0 79 98 39 38 138 10 17 42 1 0 4 1 2 114 0 2 217 1 0 23 9 4 195 0 1 50 2 1 5 2 0 31 2 1 52 3 1 11 0 2 19 0 1 16 4 1 37 2 0 20 chain 14894 chr1 249250621 + 225424402 225424585 L1PA11 4918 - 1265 1449 141396 41 0 1 142 chain 28120 chr1 249250621 + 225429244 225429643 Tigger3b 1229 - 61 472 92575 148 4 8 64 2 0 67 0 12 93 8 6 13 chain 139854 chr1 249250621 + 225431424 225433186 L1PA8 5853 - 1872 3639 26130 74 0 1 104 0 1 147 1 0 19 0 1 41 0 1 6 6 5 36 11 4 108 1 2 344 0 1 113 8 10 68 11 12 224 0 1 48 5 6 115 0 4 33 1 0 238 chain 150252 chr1 249250621 + 225433186 225435089 L1PA8 5853 + 3984 5848 24576 39 0 1 21 20 0 12 18 6 136 0 2 380 18 13 338 0 1 76 2 0 302 0 2 50 0 1 200 1 0 44 2 0 70 2 1 10 1 0 5 0 1 49 1 0 21 9 7 76 chain 6014 chr1 249250621 + 225438678 225438750 MLT1B 390 + 316 388 185099 72 chain 203992 chr1 249250621 + 225455881 225458185 L1PA5 6144 + 3832 6141 18927 376 0 1 1158 0 1 49 7 13 109 0 1 595 4 0 6 chain 27737 chr1 249250621 + 225461899 225462195 AluYd8 298 - 4 298 93915 180 2 0 114 chain 14059 chr1 249250621 + 225497587 225497737 L1PA3long 6157 + 6006 6156 144354 150 chain 150489 chr1 249250621 + 225498163 225499991 L1PA7 6471 - 12 1843 24538 24 9 0 7 1 10 132 0 1 575 1 0 89 1 0 389 0 4 30 11 12 250 2 1 307 chain 299426 chr1 249250621 + 225500000 225504509 L1P2 5180 - 875 5178 13456 10 0 2 28 0 1 7 2 1 435 0 1 74 0 1 134 0 1 88 2 0 288 0 4 52 0 1 4 1 0 420 0 3 423 0 1 52 0 1 61 0 2 110 2 0 643 0 1 6 1 0 401 1 0 4 4 5 128 0 7 107 0 15 42 75 63 18 0 3 22 221 188 90 240 44 40 49 48 75 6 5 143 chain 67230 chr1 249250621 + 225517256 225518222 L1MA2 4263 + 3157 4114 49554 36 0 9 107 5 6 269 38 34 44 1 0 102 1 0 38 7 4 149 1 0 9 2 1 91 7 0 47 1 0 11 chain 5650 chr1 249250621 + 225519680 225519745 MER41B 635 - 88 154 188569 38 0 1 27 chain 21275 chr1 249250621 + 225529041 225529345 AluSp 311 + 0 259 122942 85 45 0 174 chain 22517 chr1 249250621 + 225566301 225566608 AluSg7 307 + 0 307 117956 15 1 0 123 16 17 98 0 1 4 2 1 48 chain 26219 chr1 249250621 + 225571451 225571751 L1PA5 6144 - 3012 3313 99125 143 0 1 157 chain 28213 chr1 249250621 + 225571751 225572069 L1PA5 6144 - 3314 3632 92260 318 chain 265882 chr1 249250621 + 225572070 225575089 L1PA5 6144 + 3121 6135 15399 2173 1 0 372 5 0 330 0 1 138 chain 24399 chr1 249250621 + 225619647 225620035 LTR12C 1709 + 650 1037 108085 62 41 0 37 27 27 61 1 0 139 0 41 20 chain 4673 chr1 249250621 + 225626252 225626312 MER67A 545 + 2 62 198841 60 chain 5751 chr1 249250621 + 225640867 225640951 L1MB3 1562 + 1470 1553 187628 54 3 2 27 chain 26292 chr1 249250621 + 225643451 225643750 AluYf4 310 + 0 299 98857 299 chain 35842 chr1 249250621 + 225643982 225644438 MLT2A1 477 + 0 477 75075 168 14 11 205 0 24 69 chain 45010 chr1 249250621 + 225653858 225654730 MER41A 554 - 1 554 63044 115 325 0 336 0 6 96 chain 117071 chr1 249250621 + 225660225 225661601 LTR12C 1709 + 0 1709 32104 728 4 331 53 1 0 4 4 2 17 0 6 83 0 4 408 1 0 73 chain 3463 chr1 249250621 + 225733108 225733150 Charlie1 1172 - 45 87 215942 42 chain 12720 chr1 249250621 + 225757024 225757176 L1PA6 6164 + 6003 6157 149375 41 1 0 103 0 3 7 chain 114626 chr1 249250621 + 225802745 225804045 SVA_B 1603 + 0 1603 32915 25 0 22 155 1 0 471 0 281 193 1 0 342 1 2 63 0 1 48 chain 28204 chr1 249250621 + 225808998 225809293 AluYa5 310 - 15 310 92294 295 chain 8310 chr1 249250621 + 225827159 225827395 MSTD 398 + 154 393 169339 18 83 84 25 2 3 28 0 1 9 18 17 27 0 1 26 chain 4840 chr1 249250621 + 225834516 225834579 MLT1B 390 + 322 389 196880 53 0 4 10 chain 22228 chr1 249250621 + 225846530 225846800 AluSp 311 + 2 269 119213 130 3 0 137 chain 39231 chr1 249250621 + 225858357 225858890 MLT2A2 560 + 0 560 70411 169 13 29 199 5 16 76 0 1 12 2 1 57 chain 23993 chr1 249250621 + 225882515 225882855 THE1B 368 - 12 368 110366 63 1 0 121 8 6 24 7 11 67 5 20 44 chain 12511 chr1 249250621 + 225899791 225899953 L1PA8 5853 - 3 163 150203 90 1 0 19 2 1 50 chain 5901 chr1 249250621 + 225928976 225929042 U6 107 + 0 66 186176 66 chain 25221 chr1 249250621 + 225929802 225930098 AluSp 311 + 9 305 103631 296 chain 28653 chr1 249250621 + 225931464 225931763 AluYa5 310 + 1 300 90513 299 chain 21782 chr1 249250621 + 225972277 225972562 AluY 311 + 15 296 121094 27 10 11 236 5 0 7 chain 34173 chr1 249250621 + 225978872 225979765 LTR14B 630 - 0 620 77386 75 0 7 2 303 0 105 30 0 14 25 36 21 60 95 14 0 3 196 0 4 48 chain 105510 chr1 249250621 + 225983294 225984550 SVA_A 1864 - 0 1859 35369 537 38 526 38 0 2 116 0 116 514 3 0 10 chain 39639 chr1 249250621 + 225986088 225986647 HERVK14-int 1672 - 7 538 69839 6 1 0 34 0 3 103 1 0 9 2 0 31 2 1 62 1 0 108 1 0 100 25 1 73 chain 40742 chr1 249250621 + 225988490 225989093 LTR14B 630 - 0 620 68257 196 61 43 66 15 50 265 chain 26914 chr1 249250621 + 225998276 225998682 LTR7 482 - 0 482 96579 98 0 2 74 0 3 13 9 7 21 8 40 60 17 20 29 8 46 69 chain 26353 chr1 249250621 + 226006657 226006957 AluY 311 + 10 308 98599 122 0 1 170 3 0 5 chain 3804 chr1 249250621 + 226095762 226095805 MLT1B 390 + 288 331 210327 43 chain 24528 chr1 249250621 + 226117301 226117579 L1PA5 6144 + 5866 6144 107385 278 chain 88473 chr1 249250621 + 226153542 226154558 LTR5A 1029 + 0 1029 40196 134 0 13 882 chain 129498 chr1 249250621 + 226157286 226158918 LTR12C 1709 + 0 1709 28206 285 6 10 214 4 5 60 5 4 151 40 0 24 0 2 82 1 0 116 5 115 44 1 0 4 4 2 106 0 4 49 8 9 423 chain 2699 chr1 249250621 + 226158011 226158046 LTR12C 1709 + 847 882 103669 35 chain 5655 chr1 249250621 + 226158962 226159032 L1MB3 1562 + 1206 1276 188511 70 chain 25915 chr1 249250621 + 226195634 226195921 AluSq10 312 + 11 300 100355 140 0 2 147 chain 24171 chr1 249250621 + 226216399 226216687 AluSz6 309 + 11 299 109373 288 chain 4777 chr1 249250621 + 226242497 226242558 MER53 195 + 6 67 197609 61 chain 20803 chr1 249250621 + 226245455 226245729 AluSp 311 + 21 296 124588 50 1 3 202 2 1 19 chain 22772 chr1 249250621 + 226275094 226275370 AluYc 301 - 20 291 116716 8 7 0 157 1 3 103 chain 15598 chr1 249250621 + 226288692 226290170 Tigger3b 1229 + 59 701 139592 45 30 27 78 1208 373 100 0 2 17 chain 6336 chr1 249250621 + 226291694 226291776 Tigger3c 601 + 364 459 182503 21 0 4 9 0 9 52 chain 145419 chr1 249250621 + 226302001 226303681 SVA_D 2077 - 0 2071 25268 670 1 50 10 1 0 66 0 1 67 0 310 115 40 0 38 0 40 484 0 11 41 0 7 112 0 1 11 0 5 6 3 11 15 chain 20615 chr1 249250621 + 226324896 226325173 AluY 311 + 8 288 125242 40 8 14 220 3 0 6 chain 26309 chr1 249250621 + 226365989 226366294 AluY 311 + 0 301 98792 126 4 0 175 chain 4072 chr1 249250621 + 226379390 226379435 MER41A 554 + 421 466 206297 45 chain 21208 chr1 249250621 + 226384058 226384305 AluSz 310 + 50 297 123187 247 chain 9876 chr1 249250621 + 226423150 226423306 Tigger4a 237 - 1 158 161193 62 3 4 41 6 7 4 1 0 39 chain 5643 chr1 249250621 + 226491970 226492036 U13_ 108 + 10 76 188627 66 chain 20952 chr1 249250621 + 226493747 226493999 AluSx1 309 + 4 257 124096 235 1 2 16 chain 4185 chr1 249250621 + 226495463 226495516 MER3 215 - 63 116 204759 53 chain 55154 chr1 249250621 + 226502730 226504863 HSMAR2 1300 + 46 1256 55613 173 31 1 45 887 316 319 53 54 17 337 16 64 1 6 6 0 10 10 16 3 115 25 21 34 chain 30800 chr1 249250621 + 226502980 226503407 MER57A1 433 + 2 433 82864 29 4 3 87 16 14 154 0 1 112 0 6 25 chain 29301 chr1 249250621 + 226505331 226505640 AluYg6 310 - 1 310 87568 309 chain 27217 chr1 249250621 + 226527828 226528183 THE1B 368 + 0 368 95535 44 0 15 113 2 1 120 1 0 75 chain 117398 chr1 249250621 + 226528183 226530367 THE1B-int 1605 + 0 1600 31997 21 1 0 74 1 2 16 0 3 27 11 6 281 1 26 640 6 10 11 30 33 123 0 1 32 306 0 134 0 1 85 310 0 74 chain 21554 chr1 249250621 + 226533684 226533954 AluSq10 312 + 9 290 121953 184 1 2 6 0 8 58 3 5 18 chain 101689 chr1 249250621 + 226613277 226614556 LTR12C 1709 - 0 1709 36346 75 5 0 93 0 102 118 21 20 58 14 19 64 0 207 99 0 118 222 4 5 112 0 1 135 0 1 16 0 1 243 chain 9400 chr1 249250621 + 226614557 226614701 7SLRNA 320 - 174 300 163552 83 22 4 39 chain 5692 chr1 249250621 + 226616466 226616581 MER5B 177 + 25 161 188183 22 32 53 61 chain 74104 chr1 249250621 + 226619294 226620154 L1PA5 6144 + 5257 6130 46459 37 0 5 379 0 1 96 0 2 7 4 2 205 1 0 4 0 8 127 chain 20599 chr1 249250621 + 226633333 226633636 MER49 923 + 9 317 125298 78 12 14 179 13 16 21 chain 5508 chr1 249250621 + 226634656 226636067 LTR24C 604 + 0 604 189964 62 1316 509 33 chain 4013 chr1 249250621 + 226652418 226652464 LTR12D 1347 + 706 752 207195 46 chain 10517 chr1 249250621 + 226667027 226667158 LTR45C 530 - 390 519 158176 19 1 0 47 1 0 63 chain 22035 chr1 249250621 + 226679880 226680152 HUERS-P3b-int 2065 - 718 992 120090 125 1 2 142 0 1 4 chain 476898 chr1 249250621 + 226686957 226692568 L1PA5 6144 - 12 5588 7833 426 5 0 1361 0 4 382 11 13 300 16 0 137 1 0 106 0 2 158 0 4 11 2 1 60 0 1 191 5 7 1335 0 1 462 9 0 218 25 0 159 4 10 227 chain 3562 chr1 249250621 + 226694024 226694063 MLT2A2 560 - 0 39 214297 39 chain 11152 chr1 249250621 + 226716786 226716926 Tigger3a 397 - 120 258 155621 16 2 0 122 chain 36062 chr1 249250621 + 226723300 226723821 LTR66 600 - 39 600 74818 14 1 0 39 3 35 16 0 1 47 6 0 12 0 1 131 0 1 101 23 35 128 chain 30768 chr1 249250621 + 226727021 226727652 HERVL66-int 1251 - 374 950 82919 48 44 17 57 2 0 77 1 0 35 6 5 34 5 33 11 12 1 63 1 0 105 88 53 16 14 9 12 chain 23902 chr1 249250621 + 226747404 226747690 AluY 311 + 12 298 110901 120 0 1 77 2 1 87 chain 3953 chr1 249250621 + 226756838 226756881 MIR 256 + 95 138 208090 43 chain 252431 chr1 249250621 + 226799187 226803234 MER61-int 3695 - 0 3692 16105 251 339 4 78 17 19 190 10 9 244 1 0 38 1 0 6 1 3 51 13 11 178 3 0 5 8 0 476 0 4 204 3 15 59 0 19 10 30 198 72 1 0 383 0 3 115 22 25 155 19 24 111 0 96 90 1 2 73 1 0 62 14 0 47 0 4 89 2 1 80 0 5 89 310 0 21 1 5 25 1 0 16 4 0 27 chain 30658 chr1 249250621 + 226887485 226888252 MLT2A1 477 - 2 475 83106 41 6 0 6 3 43 34 0 1 71 2 1 107 9 6 114 325 0 49 chain 29518 chr1 249250621 + 226889023 226889332 AluYk12 309 + 0 309 86570 309 chain 6113 chr1 249250621 + 226898053 226898152 MER45C 884 - 15 111 184326 23 2 0 51 10 9 13 chain 26137 chr1 249250621 + 226908762 226909070 AluSp 311 + 0 303 99450 120 5 0 183 chain 9807 chr1 249250621 + 226930769 226930941 MLT1B 390 - 217 390 161560 98 20 22 20 5 6 7 2 0 20 chain 9334 chr1 249250621 + 226980002 226980125 Charlie4a 502 - 13 135 163885 9 1 0 113 chain 24405 chr1 249250621 + 227027497 227027788 AluSp 311 - 13 303 108048 170 1 0 120 chain 5662 chr1 249250621 + 227033405 227033476 MLT1D-int 1367 + 76 147 188461 71 chain 43511 chr1 249250621 + 227038635 227039169 MER41A 554 + 0 553 64799 213 10 28 101 0 1 210 chain 189957 chr1 249250621 + 227039250 227044003 MER4-int 2692 + 74 2692 20051 25 1 0 14 3 2 141 1 0 173 1 0 4 0 1 69 321 0 200 0 1 204 1 0 5 10 5 139 13 15 30 1 0 74 2 3 14 0 3 194 0 16 28 1 0 2 1850 0 16 10 16 114 0 4 143 0 1 19 0 1 7 5 6 126 1 0 28 2 3 85 1 2 4 0 1 85 6 10 95 0 1 23 2 0 40 2 0 9 10 1 9 0 2 279 12 22 92 0 5 7 chain 161534 chr1 249250621 + 227040930 227042765 L1PA6 6164 + 4329 6162 23125 1698 4 0 124 0 2 9 chain 27860 chr1 249250621 + 227047588 227047888 AluYb8 318 - 4 304 93493 300 chain 6414 chr1 249250621 + 227057556 227057728 L1MB5 1630 + 1458 1621 181914 17 28 24 8 0 13 5 14 0 24 1 0 47 6 5 15 2 0 5 chain 3216 chr1 249250621 + 227103601 227103636 MER3 215 - 0 35 220629 35 chain 34932 chr1 249250621 + 227109948 227110447 THE1B-int 1605 + 0 598 76293 16 0 2 88 0 30 61 9 8 69 0 6 77 12 10 19 9 73 139 chain 120632 chr1 249250621 + 227113187 227114535 L1PA5 6144 - 3453 4803 30755 203 1 0 147 1 0 143 0 4 631 0 1 215 1 0 6 chain 305619 chr1 249250621 + 227114535 227117949 L1PA5 6144 + 2708 6142 13184 120 0 4 1366 0 10 1089 0 4 509 0 1 24 0 1 306 chain 4530 chr1 249250621 + 227148290 227148365 HAL1-2a_MD 234 - 3 71 200460 9 6 0 44 2 1 14 chain 13944 chr1 249250621 + 227157983 227158192 Tigger3a 397 - 35 258 144776 162 17 21 11 1 11 18 chain 139170 chr1 249250621 + 227184000 227185668 L1PA7 6471 - 1831 3524 26267 90 0 3 227 0 3 41 0 2 7 6 8 182 0 2 236 1 2 231 1 0 32 0 4 17 1 5 258 1 0 187 0 6 150 chain 156777 chr1 249250621 + 227185674 227187794 L1PA7 6471 + 4629 6454 23764 37 0 8 30 0 1 917 1 2 212 305 0 618 chain 27354 chr1 249250621 + 227224122 227224430 AluYf4 310 - 5 310 95101 41 2 0 246 1 0 18 chain 20551 chr1 249250621 + 227225464 227225729 HSMAR2 1300 + 16 292 125472 43 0 1 7 2 0 132 0 1 36 0 11 45 chain 8991 chr1 249250621 + 227297365 227297507 Tigger3b 1229 - 602 745 165655 53 0 2 57 10 9 22 chain 19905 chr1 249250621 + 227308514 227308791 MER1B 344 - 8 286 127462 51 17 22 46 4 0 159 chain 162398 chr1 249250621 + 227319816 227321658 SVA_D 2077 + 10 2056 23013 157 0 7 3 0 2 717 12 54 10 0 1 30 0 2 9 4 56 277 0 99 9 1 0 613 chain 25722 chr1 249250621 + 227380764 227381060 AluYc3 301 - 7 301 101210 182 2 0 112 chain 4991 chr1 249250621 + 227394634 227395008 L1PA4 6152 - 1 373 63531 167 2 1 185 1 0 19 chain 251505 chr1 249250621 + 227395065 227397794 L1PA2 6032 - 0 2740 16144 846 0 4 59 0 7 1824 chain 2349 chr1 249250621 + 227397796 227397972 L1PA4 6152 - 373 549 63531 176 chain 19966 chr1 249250621 + 227410250 227410552 MER39B 650 + 284 587 127251 62 0 1 87 4 1 73 0 1 6 29 31 41 chain 178303 chr1 249250621 + 227418691 227420885 L1PA5 6144 - 3 6144 21136 247 0 2 86 0 1 338 1 0 276 0 1 125 8 9 215 0 3 102 0 1 41 3 3570 256 1 3 249 0 153 150 5 222 91 chain 17333 chr1 249250621 + 227422505 227422728 MER30 238 + 0 238 134700 104 4 19 115 chain 95066 chr1 249250621 + 227435947 227437530 L1MA2 4263 + 2411 3791 38073 29 9 10 82 9 0 7 9 7 98 3 1 56 5 0 36 170 0 152 1 0 19 1 2 240 5 9 207 4 17 79 26 0 105 25 20 32 2 1 4 0 1 33 5 3 130 chain 23978 chr1 249250621 + 227443841 227444186 L1PA8 5853 + 5515 5853 110455 49 1 0 44 2 0 40 2 0 30 2 1 8 1 2 32 0 1 18 2 1 19 2 1 86 1 0 6 chain 25167 chr1 249250621 + 227455257 227455617 THE1D 372 - 0 372 103924 32 1 0 101 6 5 37 16 29 47 0 1 120 chain 129446 chr1 249250621 + 227463289 227464792 SVA_B 1603 + 0 1603 28214 36 1 8 682 20 0 118 6 41 63 5 46 23 0 37 549 chain 4193 chr1 249250621 + 227475717 227475817 MER68 562 + 423 523 204647 48 37 37 15 chain 28511 chr1 249250621 + 227487843 227488325 L1PB3 3668 + 3168 3614 91139 20 0 1 100 2 1 100 2 1 81 34 10 21 2 1 24 3 1 37 7 3 13 1 0 13 7 4 15 chain 3803 chr1 249250621 + 227525526 227525656 MER74A 558 - 297 426 210357 37 69 68 24 chain 42288 chr1 249250621 + 227529588 227530113 MLT2A2 560 - 14 560 66287 96 0 1 32 0 11 32 0 9 365 chain 4379 chr1 249250621 + 227530114 227530192 Tigger1 2417 - 2330 2417 202213 33 12 0 7 0 6 12 0 15 14 chain 22200 chr1 249250621 + 227568980 227569252 AluSc5 308 - 9 300 119354 24 0 4 116 6 21 126 chain 14974 chr1 249250621 + 227578688 227578870 AluSp 311 + 105 287 141398 182 chain 325504 chr1 249250621 + 227589935 227595262 L1PB1 5432 + 33 5420 12368 20 0 1 5 7 0 233 308 0 92 7 1103 57 0 4 48 0 6 374 4 5 74 1 5 187 2 1 258 13 4 52 0 1 154 343 2 123 2 1 305 6 1 109 1 0 220 0 2 28 2 0 195 1 0 6 0 1 10 10 12 180 5 6 4 1 0 293 346 0 413 1 2 182 4 3 264 1 4 20 1 2 11 9 0 22 1 0 9 5 4 7 4 0 11 2 0 50 3 2 16 1 0 44 1 0 15 3 0 13 9 0 18 3 1 4 1 0 14 2 0 24 1 0 20 2 1 13 1 0 16 chain 46778 chr1 249250621 + 227599201 227599808 Tigger1 2417 - 333 950 61391 15 0 3 118 0 1 329 12 18 133 chain 21784 chr1 249250621 + 227634222 227634541 THE1B 368 - 40 368 121085 85 35 45 29 1 0 169 chain 11034 chr1 249250621 + 227637106 227637232 MER50 708 - 23 149 156077 126 chain 514300 chr1 249250621 + 227661292 227667722 L1PA7 6471 + 0 6470 5748 412 1 0 102 3 0 6 6 3 438 0 1 74 2 0 187 11 22 514 1 0 99 11 19 549 0 3 197 9 6 65 27 33 106 2 0 8 10 10 7 0 2 26 0 4 610 1 0 20 1 2 17 4 0 7 13 17 170 17 4 155 0 4 98 25 11 199 0 2 110 0 3 33 0 1 21 2 0 38 0 18 387 0 4 160 0 1 401 0 2 26 0 1 23 2 1 153 1 2 26 1 7 28 0 4 36 9 8 236 1 0 51 0 3 17 0 2 458 chain 28091 chr1 249250621 + 227676043 227676412 THE1B-int 1605 - 1208 1588 92682 62 0 2 54 0 6 163 5 8 85 chain 14563 chr1 249250621 + 227704210 227704481 Tigger3c 601 - 72 314 142699 30 39 1 127 1 11 41 2 0 5 15 16 11 chain 390817 chr1 249250621 + 227714233 227719842 L1PB1 5432 - 19 5413 10426 9 1 0 13 1 0 21 1 0 24 26 24 10 5 0 10 13 6 16 1 0 43 27 25 44 2 0 7 23 18 8 1 0 21 1 0 7 0 9 283 8 0 9 0 2 5 0 2 8 0 5 9 1 0 11 7 5 52 0 2 71 0 3 81 1 0 64 1 2 313 0 4 168 1 2 40 4 5 134 195 0 86 1 4 705 0 1 133 0 3 44 5 4 177 0 1 4 1 0 19 0 5 108 0 4 20 24 14 656 21 5 110 5 7 104 0 1 185 8 11 5 2 0 7 1 0 417 0 1 221 1 0 274 0 3 41 0 1 68 11 6 292 9 0 9 6 16 22 1 0 5 chain 341058 chr1 249250621 + 227739480 227743711 L1PA4 6152 + 1854 6149 11868 338 2 72 56 24 7 59 0 4 338 0 5 347 18 19 115 1 0 342 5 0 1444 0 1 891 1 0 114 0 7 136 chain 8979 chr1 249250621 + 227748881 227749003 5S 121 + 0 121 165717 46 5 4 71 chain 6459 chr1 249250621 + 227755478 227755547 L1PA3long 6157 - 4 73 181567 69 chain 47547 chr1 249250621 + 227776541 227777154 L1PA11 4918 - 444 1044 60814 68 7 0 12 2 1 62 1 0 289 7 3 165 chain 36018 chr1 249250621 + 227777154 227777616 LTR2 463 - 0 463 74873 88 15 16 359 chain 388954 chr1 249250621 + 227777616 227782549 Harlequin-int 5206 - 0 5064 10488 26 6 1 19 32 36 10 8 7 162 1 2 36 10 12 228 6 10 362 2 16 18 6 52 116 1 0 317 0 6 94 7 4 122 7 13 471 0 3 70 1 0 425 0 1 79 0 1 977 0 1 87 0 1 128 2 1 22 0 5 84 17 0 56 0 1 108 4 5 460 3 5 62 8 0 113 1 70 159 chain 28946 chr1 249250621 + 227784806 227785151 MER9a3 513 - 164 513 89241 80 0 4 265 chain 8288 chr1 249250621 + 227807489 227807594 MER85 139 - 22 137 169469 18 0 10 87 chain 6583 chr1 249250621 + 227808327 227808554 LTR56 451 - 121 335 180589 24 44 48 15 15 15 24 31 29 36 15 0 23 chain 364896 chr1 249250621 + 227814796 227819116 HERV17-int 4347 - 0 4334 11232 437 0 2 166 3 2 365 0 1 233 3 0 543 0 16 249 0 7 648 2 0 79 4 5 126 32 27 397 1 0 415 10 10 126 0 2 72 0 1 79 0 1 199 1 0 26 2 0 35 1 0 51 2 1 13 chain 185610 chr1 249250621 + 227825331 227828580 HERVH48-int 3304 - 138 3185 20451 11 2 0 72 60 44 67 2 0 4 1 0 45 1 0 5 2 0 22 1 0 10 13 5 23 178 136 5 2 0 11 2 0 7 2 0 19 9 7 21 22 18 42 1 0 18 2 13 46 0 3 168 7 6 16 0 19 9 1 0 12 1 0 67 25 22 120 3 0 143 1 0 32 1 0 124 16 0 55 4 5 55 1 0 13 5 1 61 2 0 14 1 0 221 1 0 5 1 0 12 1 0 51 0 22 49 10 4 6 1 0 5 2 0 16 1 0 27 2 0 20 1 0 15 1 0 4 2 0 22 2 0 3 3 0 31 2 0 16 9 8 12 1 0 10 4 1 117 25 17 70 1 0 27 1 0 45 2 0 66 3 1 5 1 0 13 5 1 19 10 16 13 12 0 40 3 1 10 1 0 78 13 7 10 21 0 13 1 0 69 1 0 11 4 0 65 1 0 4 31 24 11 14 1 35 1 0 25 2 0 9 3 1 5 1 0 10 2 0 8 5 2 6 3 0 12 2 0 7 6 2 8 2 0 7 chain 9767 chr1 249250621 + 227828928 227829050 MER48 407 - 0 127 161756 43 0 5 79 chain 22520 chr1 249250621 + 227857070 227857361 AluY 311 + 15 296 117931 110 11 1 7 2 0 140 0 2 21 chain 53908 chr1 249250621 + 227864225 227864823 L1PA4 6152 - 1 600 56422 154 1 2 443 chain 34918 chr1 249250621 + 227866950 227867412 LTR2 463 + 0 463 76314 136 1 0 9 10 11 204 18 19 84 chain 365149 chr1 249250621 + 227868889 227873492 Harlequin-int 5206 + 125 5206 11226 7 0 3 12 7 5 148 1 0 67 19 4 65 0 2 46 8 0 63 0 2 112 0 1 349 1 0 278 1 0 132 0 1 141 1 2 357 0 2 59 1 0 448 0 1 126 0 1 744 8 1 105 3 513 189 3 1 164 8 7 251 0 8 6 10 0 296 5 6 93 1 2 162 8 7 65 6 1 18 1 0 8 chain 28720 chr1 249250621 + 227873494 227873845 LTR2 463 + 2 358 90242 218 1 6 132 chain 471846 chr1 249250621 + 227887596 227893472 L1PA7 6471 + 565 6469 7974 82 6 7 212 7 8 482 0 8 583 1 0 33 1 2 366 0 1 83 10 0 200 0 2 255 0 4 155 0 6 54 1 0 255 9 10 111 17 13 24 3 4 24 0 4 162 0 1 157 3 12 119 2 0 74 0 12 499 12 3 70 0 8 336 3 0 274 0 5 157 0 1 142 4 14 17 20 1 8 4 0 511 0 4 165 8 0 8 0 8 115 2 1 19 0 2 11 chain 158173 chr1 249250621 + 227897704 227899534 SVA_D 2077 - 0 2008 23566 605 0 98 142 49 0 187 0 2 46 0 86 148 8 5 30 0 3 91 0 40 384 0 1 140 chain 4078 chr1 249250621 + 227898451 227898500 SVA_D 2077 - 972 1072 81855 2 1 0 10 0 1 7 0 51 29 chain 116344 chr1 249250621 + 227904036 227905492 L1PA10 4194 + 2043 3508 32325 176 3 7 320 0 1 463 15 18 13 0 2 124 8 7 334 chain 5007 chr1 249250621 + 227905496 227905558 Harlequin-int 5206 + 2781 2843 195060 62 chain 92703 chr1 249250621 + 227905559 227906766 Harlequin-int 5206 + 2843 4020 38746 491 27 1 139 9 6 196 4 0 12 1 2 95 34 36 199 chain 37765 chr1 249250621 + 227908515 227909014 LTR10F 562 - 0 562 72470 87 2 0 196 7 13 12 0 24 45 1 4 19 0 28 97 0 4 33 chain 4451 chr1 249250621 + 227909870 227909963 LTR10E 629 - 30 119 201332 29 25 22 14 1 0 24 chain 88249 chr1 249250621 + 227909969 227911032 MER11C 1089 + 0 1073 40282 227 3 0 6 0 8 9 0 1 66 5 8 242 8 7 18 0 1 122 0 1 357 chain 6785 chr1 249250621 + 227914906 227914986 LTR45C 530 + 28 108 179073 80 chain 20010 chr1 249250621 + 227929733 227929954 L1PA3long 6157 - 0 221 127114 221 chain 7030 chr1 249250621 + 227942676 227942770 MER4D0 881 + 52 144 177256 26 1 0 33 1 0 33 chain 3360 chr1 249250621 + 227959935 227960149 L1MB3 1562 - 7 241 217876 32 155 175 27 chain 7543 chr1 249250621 + 227994422 227994511 MLT1A0 366 + 4 93 173918 89 chain 21676 chr1 249250621 + 227994629 227994893 AluSp 311 - 45 311 121486 134 2 0 18 0 4 110 chain 119937 chr1 249250621 + 228000973 228002483 THE1B-int 1605 - 0 1546 31080 404 1 2 588 2 0 102 1 0 52 0 25 42 0 1 124 17 29 177 chain 9790 chr1 249250621 + 228002503 228002618 MER1A 529 - 80 195 161650 115 chain 233229 chr1 249250621 + 228012362 228016133 L1PA11 4918 - 351 3484 17130 13 1 0 13 51 37 16 1 0 13 3 1 80 3 2 42 1 2 20 6 0 256 309 0 369 18 17 24 1 0 422 0 4 86 321 15 17 0 3 26 4 0 64 0 3 29 0 4 268 10 6 74 0 1 211 0 15 9 22 0 148 0 4 12 10 3 110 0 1 206 5 6 93 13 10 44 8 9 157 0 1 144 0 5 18 chain 5761 chr1 249250621 + 228054907 228054976 LTR47A 437 - 9 78 187539 69 chain 75530 chr1 249250621 + 228056040 228057009 LTR5_Hs 974 - 0 974 45756 103 8 6 31 8 15 67 8 0 7 0 8 81 1 0 188 0 1 181 0 1 118 1 0 167 chain 15563 chr1 249250621 + 228058506 228058670 L1HS 6032 - 0 164 139691 164 chain 500752 chr1 249250621 + 228059593 228065988 L1PA7 6471 + 1 6461 6798 402 0 3 751 11 34 40 0 4 269 0 7 8 0 1 274 0 1 5 2 1 26 0 4 470 0 1 6 0 1 6 0 1 251 10 8 8 0 2 47 14 0 110 20 8 100 0 1 14 0 1 46 1 2 17 0 353 48 0 2 238 0 4 133 0 3 1140 0 1 61 0 1 150 30 12 6 0 2 66 3 5 283 6 0 181 1 4 54 315 0 20 0 2 558 0 9 194 chain 7889 chr1 249250621 + 228181274 228181398 Tigger2 2703 + 2509 2658 171741 38 0 5 44 14 34 28 chain 25851 chr1 249250621 + 228298579 228298939 MER4E 760 - 0 343 100650 93 4 0 129 21 8 113 chain 20716 chr1 249250621 + 228298949 228299191 AluSg 306 + 11 253 124909 242 chain 119427 chr1 249250621 + 228300262 228302003 MER57-int 2662 - 6 1784 31254 31 3 0 12 0 3 19 113 87 15 0 4 19 11 19 11 18 12 85 3 0 7 2 0 153 0 1 269 3 0 292 4 20 193 2 0 32 0 5 144 0 4 45 0 5 145 0 36 110 chain 3505 chr1 249250621 + 228309358 228309411 MER65D 500 + 446 500 215287 33 4 5 16 chain 28681 chr1 249250621 + 228381208 228381511 AluYa5 310 - 7 310 90401 303 chain 3324 chr1 249250621 + 228414646 228414683 MIR 256 + 101 138 218491 37 chain 3020 chr1 249250621 + 228423935 228424088 L1MEf 1413 - 706 859 224604 23 12 11 13 79 80 26 chain 24228 chr1 249250621 + 228427718 228428019 AluY 311 + 4 307 109049 12 6 7 108 1 2 174 chain 195814 chr1 249250621 + 228438369 228440791 HERVL-int 5654 - 426 2890 19513 122 12 0 9 2 14 101 0 3 295 9 10 181 0 4 119 0 1 313 0 6 127 1 17 106 0 1 581 3 4 239 1 10 201 chain 21442 chr1 249250621 + 228443492 228443819 MER1B 344 + 3 342 122364 77 8 12 106 1 3 52 26 32 57 chain 30478 chr1 249250621 + 228518463 228519544 L1PB1 5432 - 8 716 83475 4 1 0 16 1 0 13 1 0 21 1 0 24 56 46 4 1 0 15 537 178 41 1 0 10 1 0 5 12 13 137 13 15 166 chain 29663 chr1 249250621 + 228572180 228572490 AluYa5 310 - 0 310 86007 310 chain 31153 chr1 249250621 + 228606216 228606639 MER4A1 472 - 0 465 82250 21 15 16 49 0 18 120 1 22 187 0 1 13 0 1 17 chain 34253 chr1 249250621 + 228608850 228609263 LTR3 431 + 0 419 77273 143 5 6 101 0 1 32 1 5 131 chain 57942 chr1 249250621 + 228620445 228621171 MER4E 760 + 20 748 54008 170 1 0 173 1 3 65 2 1 12 1 0 136 0 3 165 chain 36365 chr1 249250621 + 228621406 228621861 MER4A1 472 + 2 457 74413 283 0 7 4 7 0 161 chain 8699 chr1 249250621 + 228637333 228637449 MER41B 635 + 514 635 167200 35 7 12 74 chain 3816 chr1 249250621 + 228692048 228692147 MER44A 345 - 194 313 210152 35 40 60 24 chain 166365 chr1 249250621 + 228693380 228695338 L1P1 4361 + 1 1941 22477 573 1 0 269 21 4 1094 chain 543476 chr1 249250621 + 228708403 228714536 L1PA4 6152 - 12 6152 2269 931 7 3 563 0 2 684 1 3 700 0 3 41 2 1 31 0 1 69 0 1 2064 0 2 65 0 1 975 chain 29423 chr1 249250621 + 228724537 228724977 LTR14B 630 + 0 630 86976 55 0 149 72 0 28 96 38 48 92 12 15 75 chain 8527 chr1 249250621 + 228743493 228743604 5S 121 + 0 121 168151 27 1 11 83 chain 11659 chr1 249250621 + 228746012 228746133 5S 121 - 0 121 153655 121 chain 11659 chr1 249250621 + 228748253 228748374 5S 121 - 0 121 153654 121 chain 11659 chr1 249250621 + 228750494 228750615 5S 121 - 0 121 153653 121 chain 11659 chr1 249250621 + 228752735 228752856 5S 121 - 0 121 153652 121 chain 11659 chr1 249250621 + 228754976 228755097 5S 121 - 0 121 153651 121 chain 11659 chr1 249250621 + 228757191 228757312 5S 121 - 0 121 153650 121 chain 11659 chr1 249250621 + 228759411 228759532 5S 121 - 0 121 153649 121 chain 11659 chr1 249250621 + 228761653 228761774 5S 121 - 0 121 153648 121 chain 11537 chr1 249250621 + 228763892 228764013 5S 121 - 0 121 154155 121 chain 11659 chr1 249250621 + 228766134 228766255 5S 121 - 0 121 153647 121 chain 11659 chr1 249250621 + 228768375 228768496 5S 121 - 0 121 153646 121 chain 11659 chr1 249250621 + 228770615 228770736 5S 121 - 0 121 153645 121 chain 11659 chr1 249250621 + 228772840 228772961 5S 121 - 0 121 153644 121 chain 11659 chr1 249250621 + 228775081 228775202 5S 121 - 0 121 153643 121 chain 11659 chr1 249250621 + 228777312 228777433 5S 121 - 0 121 153642 121 chain 11659 chr1 249250621 + 228779553 228779674 5S 121 - 0 121 153641 121 chain 11659 chr1 249250621 + 228781784 228781905 5S 121 - 0 121 153640 121 chain 8072 chr1 249250621 + 228785726 228785885 MER101-int 1169 + 627 775 170643 23 11 6 40 0 1 24 24 17 37 chain 22788 chr1 249250621 + 228790853 228791137 AluSg7 307 - 12 296 116644 16 7 6 141 0 1 120 chain 157880 chr1 249250621 + 228796700 228798532 L1PA6 6164 + 4272 6109 23611 61 1 0 292 4 8 32 0 2 110 0 1 938 4 3 390 chain 4684 chr1 249250621 + 228801595 228801656 MER74A 558 - 481 543 198706 29 1 0 26 0 2 5 chain 4633 chr1 249250621 + 228802166 228802317 L1MA5A 2387 - 28 157 199269 19 1 0 6 48 28 11 1 0 23 16 16 26 chain 4641 chr1 249250621 + 228812028 228812097 LTR56 451 - 381 444 199165 5 1 0 48 1 0 4 4 0 6 chain 31121 chr1 249250621 + 228812305 228812738 LTR7B 505 - 0 505 82303 51 14 13 71 6 5 85 0 57 26 6 13 66 0 10 108 chain 24539 chr1 249250621 + 228814499 228814800 HERVH-int 3825 - 264 565 107318 301 chain 29672 chr1 249250621 + 228814831 228815141 AluYa5 310 - 0 310 85941 310 chain 18011 chr1 249250621 + 228818113 228818438 LTR7B 505 - 14 371 132830 37 14 13 71 6 5 65 0 1 19 0 2 7 3 58 16 37 13 50 chain 6692 chr1 249250621 + 228825938 228826034 MER50 708 - 107 194 179742 60 9 0 27 chain 3604 chr1 249250621 + 228834852 228834893 MER57A-int 1588 - 1297 1338 213590 41 chain 497029 chr1 249250621 + 228843076 228848566 L1PA3long 6157 + 9 6156 7007 85 0 526 161 0 128 3439 0 3 1805 chain 26633 chr1 249250621 + 228899759 228900101 Tigger2 2703 - 45 410 97546 12 0 7 5 1 0 4 0 1 47 0 16 273 chain 111850 chr1 249250621 + 228909269 228910596 LTR12C 1709 + 0 1709 33705 300 0 1 135 0 1 213 0 278 184 1 0 5 3 1 106 1 5 167 0 102 129 1 0 82 chain 7718 chr1 249250621 + 228925501 228925605 Tigger2b_Pri 1066 - 962 1066 172813 22 1 0 11 0 1 70 chain 5284 chr1 249250621 + 228985800 228985864 L1MA5A 2387 - 93 157 192170 64 chain 84074 chr1 249250621 + 229027794 229028950 L1PA3long 6157 - 1 938 41873 4 1 0 699 218 0 234 chain 14116 chr1 249250621 + 229028533 229028693 L1PA3long 6157 - 1 161 144161 160 chain 60612 chr1 249250621 + 229028950 229029617 L1PA3long 6157 + 4555 5222 52472 667 chain 33291 chr1 249250621 + 229031082 229031631 L1PB1 5432 + 4928 5427 78740 175 31 13 21 1 0 9 1 0 10 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 1 0 4 2 0 11 8 0 16 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 23033 chr1 249250621 + 229058064 229058378 AluSc5 308 + 1 302 115480 121 0 1 19 27 13 147 chain 61323 chr1 249250621 + 229077876 229078643 LTR17 781 + 0 781 52189 207 1 0 5 1 2 93 10 0 20 0 1 178 0 1 207 1 23 44 chain 28679 chr1 249250621 + 229083170 229083604 LTR7Y 441 + 0 441 90415 103 12 3 54 68 84 197 chain 202235 chr1 249250621 + 229083604 229086019 HERVH-int 3825 + 0 3825 19052 259 0 1165 261 6 33 288 0 4 1060 5 6 4 0 1 39 0 210 270 0 2 223 chain 25902 chr1 249250621 + 229087247 229087634 LTR7Y 441 + 0 439 100427 73 0 4 26 12 3 29 40 97 112 1 0 4 0 1 90 chain 64130 chr1 249250621 + 229089263 229090044 LTR17 781 + 0 781 50951 212 3 4 42 1 0 4 5 6 59 1 0 454 chain 28872 chr1 249250621 + 229091926 229092373 LTR7B 505 - 17 505 89574 31 17 16 44 3 4 31 1 0 79 1 3 28 3 27 26 6 13 71 0 10 51 6 5 49 chain 31830 chr1 249250621 + 229095540 229095886 L1PA3long 6157 + 5811 6157 81123 346 chain 32146 chr1 249250621 + 229098971 229099329 L1PA7 6471 - 1 357 80617 11 2 0 345 chain 5468 chr1 249250621 + 229137003 229137063 MER50 708 + 624 684 190323 60 chain 30677 chr1 249250621 + 229150840 229151226 MLT2A1 477 + 0 385 83077 169 4 1 8 1 2 23 0 1 181 chain 4682 chr1 249250621 + 229152037 229152097 MER33 330 - 117 177 198733 60 chain 20693 chr1 249250621 + 229236365 229236649 AluSg7 307 - 14 296 124990 116 4 5 45 0 1 8 6 0 8 2 4 95 chain 6342 chr1 249250621 + 229255231 229255314 MER51B 395 + 230 312 182452 15 1 0 67 chain 115474 chr1 249250621 + 229269934 229271418 THE1C-int 1605 + 18 1605 32618 92 0 54 98 0 9 36 1 17 8 0 18 95 10 17 12 0 1 274 1 0 267 0 2 464 2 0 91 4 3 29 chain 37508 chr1 249250621 + 229278101 229278754 MER39B 650 + 0 646 72804 46 1 13 116 0 1 6 6 0 39 17 9 68 2 0 48 16 17 36 5 6 124 26 19 37 37 38 23 chain 6127 chr1 249250621 + 229287703 229287775 Tigger1 2417 - 210 282 184215 72 chain 39525 chr1 249250621 + 229310004 229310458 LTR7 482 + 0 482 69986 39 1 0 17 2 0 207 1 32 187 chain 4172 chr1 249250621 + 229310475 229310525 LTR7 482 + 431 482 204945 27 0 1 23 chain 298266 chr1 249250621 + 229310527 229314218 HERVH-int 3825 + 0 3825 13517 212 0 11 309 5 0 38 2 1 9 1 0 23 29 1 10 0 17 26 22 0 41 46 1 21 21 0 9 2 1 49 1 0 770 0 1 135 4 31 1029 16 6 341 0 3 25 8 218 487 chain 39702 chr1 249250621 + 229315473 229315923 LTR7 482 + 0 482 69750 263 1 32 65 0 1 121 chain 5979 chr1 249250621 + 229344300 229344392 L1MC 810 + 165 253 185432 18 3 0 25 1 0 45 chain 4931 chr1 249250621 + 229346772 229346834 MLT1J2 417 - 297 359 195924 62 chain 28664 chr1 249250621 + 229368942 229369244 AluYa5 310 - 7 309 90470 302 chain 5930 chr1 249250621 + 229369390 229369642 LTR8A 794 + 546 794 185887 39 161 157 52 chain 19627 chr1 249250621 + 229370403 229370756 MER4A1 472 + 0 284 128317 96 93 4 89 1 0 35 3 24 36 chain 37660 chr1 249250621 + 229380133 229380613 LTR2B 499 - 0 491 72600 371 0 19 38 9 0 57 0 1 5 chain 41967 chr1 249250621 + 229399986 229400523 MLT2A2 560 + 0 560 66668 33 0 5 31 0 1 112 0 23 342 6 0 13 chain 33938 chr1 249250621 + 229427590 229427973 L1PA3long 6157 + 5773 6156 77718 383 chain 7641 chr1 249250621 + 229467252 229467405 MER21A 919 + 12 177 173277 69 39 52 24 1 0 20 chain 16342 chr1 249250621 + 229482675 229482977 MER1B 344 + 42 344 137361 12 18 18 12 16 19 113 4 0 45 26 27 56 chain 5205 chr1 249250621 + 229518874 229518935 U6 107 + 0 61 192973 61 chain 42720 chr1 249250621 + 229530245 229530778 L1PA8 5853 + 5320 5847 65750 244 1 0 23 1 2 19 2 0 71 1 0 14 1 0 51 1 0 11 7 6 86 chain 30794 chr1 249250621 + 229548164 229548562 LTR7 482 + 0 482 82875 86 0 50 127 1 32 18 1 0 67 1 5 97 chain 285757 chr1 249250621 + 229548573 229552160 HERVH-int 3825 + 9 3825 14300 203 0 11 222 118 0 87 5 0 38 1 0 10 1 0 23 0 92 83 2 1 97 1 0 809 4 31 356 22 27 44 0 4 221 0 4 38 0 1 5 2 1 46 0 1 656 8 218 260 0 2 225 chain 3093 chr1 249250621 + 229549054 229549106 HERVH-int 3825 + 504 643 223061 26 1 0 11 1 89 13 chain 34813 chr1 249250621 + 229553967 229554412 LTR7 482 + 0 482 76452 245 2 33 35 1 0 63 5 9 84 0 3 10 chain 24187 chr1 249250621 + 229554570 229554928 LTR7B 505 + 64 495 109291 44 0 10 57 0 38 12 21 16 8 0 31 82 1 0 26 0 1 45 9 8 53 chain 12007 chr1 249250621 + 229557975 229558135 L1PA8 5853 + 5699 5853 152168 44 1 0 17 1 0 73 7 3 17 chain 14951 chr1 249250621 + 229620021 229620227 MER30 238 - 0 238 141472 45 0 3 65 14 43 82 chain 23740 chr1 249250621 + 229638039 229638327 AluSc8 310 + 15 306 111831 117 0 3 171 chain 12668 chr1 249250621 + 229640675 229640899 MER30 238 + 0 238 149577 24 11 12 57 34 40 22 1 7 40 0 1 35 chain 64642 chr1 249250621 + 229647209 229647932 L1PA5 6144 + 5409 6132 50730 723 chain 3185 chr1 249250621 + 229673603 229673639 tRNA-Gly-GGY 63 + 0 36 221218 36 chain 7942 chr1 249250621 + 229681479 229681589 Tigger2a 444 + 0 104 171370 97 6 0 7 chain 5412 chr1 249250621 + 229695723 229695794 MER96B 391 + 92 163 190878 71 chain 25284 chr1 249250621 + 229731418 229731711 AluSp 311 - 18 311 103292 293 chain 5479 chr1 249250621 + 229806355 229806439 MER33 330 + 0 85 190223 39 9 10 36 chain 37878 chr1 249250621 + 229832688 229833137 LTR7 482 + 0 477 72310 56 5 1 47 0 1 143 0 31 198 chain 5164 chr1 249250621 + 229839877 229840056 L1PB1 5432 - 31 193 193407 9 1 0 12 13 12 18 49 36 17 12 11 6 1 0 41 chain 76280 chr1 249250621 + 229842428 229843529 MER11B 1079 + 0 1079 45322 457 18 17 22 24 12 15 0 1 14 11 6 32 18 19 123 1 0 23 10 0 17 27 29 7 0 2 29 0 1 53 0 1 171 1 0 28 chain 129057 chr1 249250621 + 229870314 229871764 L1PA4 6152 - 9 1459 28303 61 3 1 976 0 1 13 0 1 397 chain 292352 chr1 249250621 + 229878100 229882298 L1PA15 4387 - 73 4320 13873 31 0 1 12 21 18 35 22 17 15 1 0 55 2 0 26 1 0 62 3 2 5 0 1 40 0 1 57 6 5 23 0 1 20 2 0 4 0 1 49 4 0 17 1 3 219 0 1 190 12 13 23 4 5 35 0 2 26 0 1 22 1 0 33 0 1 72 3 4 48 0 1 662 6 7 234 2 0 57 3 0 5 4 7 282 16 32 33 13 14 36 0 1 4 1 0 126 6 0 65 1 2 15 1 0 4 0 1 140 5 56 93 5 0 37 0 1 5 1 0 222 14 13 54 2 1 262 9 10 31 1 4 203 1 2 60 22 23 68 0 1 3 6 0 84 5 1 24 4 6 59 chain 25483 chr1 249250621 + 229884580 229884994 L1MA8 2339 + 1760 2153 102303 52 0 1 27 4 0 91 4 0 23 1 0 49 8 7 33 4 12 44 3 1 19 18 0 34 chain 13197 chr1 249250621 + 229903846 229904030 L1PA8 5853 - 0 174 147477 93 1 0 19 2 1 42 9 0 9 0 1 9 chain 54653 chr1 249250621 + 229924414 229925175 L1PA11 4918 + 3840 4578 55933 66 1 2 420 5 0 65 2 1 13 2 0 50 0 3 12 2 0 17 1 0 12 51 38 15 1 0 13 2 0 11 chain 51553 chr1 249250621 + 229926189 229926774 LTR10C 591 + 0 584 57924 80 1 0 504 chain 5431 chr1 249250621 + 229937893 229937970 L1PB1 5432 + 5344 5418 190695 28 1 0 19 1 0 13 1 0 14 chain 3138 chr1 249250621 + 229952791 229952824 MER49 923 - 279 312 222211 33 chain 5224 chr1 249250621 + 229959665 229959733 MER101 471 + 8 75 192793 6 1 0 61 chain 16744 chr1 249250621 + 229964633 229964880 L1PA8 5853 - 0 245 136275 24 13 14 55 1 0 19 2 1 52 1 0 9 1 0 60 0 1 10 chain 23947 chr1 249250621 + 229975846 229976146 L1PB4 2604 + 2072 2374 110641 31 3 5 266 chain 3498 chr1 249250621 + 229982379 229982419 L1PA2 6032 + 5991 6031 215377 40 chain 4747 chr1 249250621 + 229998181 229998408 L1MB3 1562 - 7 210 197950 15 84 85 17 45 19 35 5 6 26 chain 132397 chr1 249250621 + 230001022 230002569 LTR12C 1709 + 0 1709 27543 248 2 4 41 0 1 405 0 159 253 1 0 6 2 0 107 0 4 408 1 0 73 chain 113430 chr1 249250621 + 230067068 230068363 SVA_C 1631 - 4 1625 33243 572 0 216 113 0 116 401 0 1 167 13 7 13 3 0 7 0 2 6 chain 52958 chr1 249250621 + 230086209 230086985 L1PB3 3668 - 143 913 57041 22 43 25 83 6 5 100 2 0 4 0 1 10 0 1 192 6 24 53 3 0 18 2 0 232 chain 310681 chr1 249250621 + 230090431 230094529 L1PB1 5432 - 28 4086 12978 9 0 3 22 1 0 24 62 45 20 1 0 43 2 1 16 3 2 50 2 0 11 6 2 10 1 0 8 1 0 24 1 0 5 7 6 299 0 1 27 0 1 140 1 8 160 0 1 21 21 0 337 1 0 216 0 1 67 8 12 80 8 10 307 0 1 801 4 8 112 9 0 181 0 1 198 2 0 111 0 3 6 8 5 256 0 1 190 7 11 132 12 5 47 chain 6302 chr1 249250621 + 230132324 230132432 MLT1A0 366 - 0 103 182786 36 22 17 50 chain 15162 chr1 249250621 + 230141293 230141641 L1PB1 5432 - 5 318 140874 5 2 0 4 1 0 14 1 0 12 1 0 22 1 0 6 47 42 25 14 1 16 1 0 44 1 0 14 3 2 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 chain 28624 chr1 249250621 + 230154010 230154403 LTR7 482 + 0 474 90635 69 8 46 109 0 1 5 0 31 55 0 10 36 4 5 107 chain 22021 chr1 249250621 + 230154411 230154708 L1PA14 3548 - 217 507 120137 104 0 1 5 1 0 84 9 6 17 4 0 73 chain 7990 chr1 249250621 + 230162018 230162111 MLT2B1 522 + 21 114 171121 93 chain 3868 chr1 249250621 + 230168136 230168233 MER77 626 + 395 493 209331 23 39 40 35 chain 4159 chr1 249250621 + 230172113 230172160 L1M4c 1769 - 979 1026 205103 47 chain 25704 chr1 249250621 + 230173267 230173601 MER47A 366 + 20 357 101271 282 1 4 51 chain 4685 chr1 249250621 + 230196752 230196861 L1MC4a 1092 - 952 1057 198695 18 2 1 9 25 23 46 1 0 8 chain 9659 chr1 249250621 + 230233015 230233304 L1MB3 1562 - 10 274 162302 22 9 8 31 89 64 6 1 0 24 29 32 14 1 0 63 chain 29225 chr1 249250621 + 230267484 230267956 LTR3B_ 500 + 0 458 87935 14 0 1 61 1 0 175 1 4 44 1 0 33 17 0 4 0 1 11 55 58 36 3 0 16 chain 43778 chr1 249250621 + 230287429 230287979 MER41A 554 - 0 554 64482 95 0 3 317 14 15 124 chain 3432 chr1 249250621 + 230425937 230425978 MER5A 189 - 140 181 216537 41 chain 79260 chr1 249250621 + 230432331 230433190 L1PA3long 6157 - 1709 2567 43725 759 1 0 99 chain 153655 chr1 249250621 + 230433190 230434890 L1PA3long 6157 + 4457 6157 24133 184 1 0 31 4 3 549 0 1 81 0 1 850 chain 9516 chr1 249250621 + 230441930 230442055 MSTB 430 - 298 424 162994 31 2 3 92 chain 27037 chr1 249250621 + 230529301 230529593 AluYd8 298 + 0 292 96155 292 chain 4423 chr1 249250621 + 230547947 230548058 Tigger2a 444 - 0 113 201666 29 1 0 5 42 45 34 chain 18927 chr1 249250621 + 230556178 230556545 THE1B 368 + 0 368 130302 15 3 1 31 41 48 16 5 6 24 8 12 16 32 23 176 chain 10651 chr1 249250621 + 230586624 230587131 L1MA3 4352 + 4134 4327 157601 61 308 0 40 4 0 23 1 2 22 1 0 6 6 5 13 9 8 13 chain 5783 chr1 249250621 + 230599369 230599499 L1MC2 1988 + 1865 1982 187337 51 47 34 32 chain 530874 chr1 249250621 + 230606379 230612793 L1PA7 6471 - 1 6456 4101 5 3 0 23 7 9 812 2 0 344 1 0 114 9 1 405 0 1 1048 0 3 152 0 4 449 0 4 374 21 22 24 0 1 41 1 4 48 0 1 95 1 0 524 0 2 263 0 1 5 0 3 127 0 1 743 0 2 402 1 2 26 0 12 131 1 0 53 0 1 35 4 18 120 chain 3394 chr1 249250621 + 230622364 230622404 LTR37A 408 + 348 388 217215 40 chain 33138 chr1 249250621 + 230636069 230636579 LTR19A 502 - 0 502 79004 8 2 0 55 14 9 129 13 12 39 0 37 33 37 0 180 chain 7482 chr1 249250621 + 230649467 230649775 MSTA 426 - 64 426 174253 22 177 232 37 16 15 56 chain 511918 chr1 249250621 + 230656932 230663471 L1PA7 6471 - 10 6466 5985 137 0 1 341 13 0 8 0 1 20 0 1 110 0 1 220 1 0 194 17 0 208 60 15 89 9 1 38 19 15 112 2 0 667 15 16 248 0 8 164 20 10 201 3 4 128 1 0 260 4 0 6 0 4 553 0 1 759 6 5 73 0 6 275 0 1 278 1 2 377 15 15 30 8 8 65 1 0 142 11 6 16 0 1 5 0 1 6 1 0 205 1 0 29 0 1 4 1 2 158 9 8 166 0 1 29 chain 3580 chr1 249250621 + 230664126 230664178 L1MC2 1988 + 1937 1988 213975 8 1 0 43 chain 12239 chr1 249250621 + 230682482 230682621 AluYk4 311 - 7 146 151259 139 chain 38579 chr1 249250621 + 230686550 230687001 L1PA7 6471 - 1 453 71323 333 0 1 118 chain 17539 chr1 249250621 + 230699992 230700310 THE1C 375 + 0 347 134157 77 7 21 15 0 1 36 19 20 19 41 54 104 chain 52049 chr1 249250621 + 230702558 230703181 PABL_A 660 - 0 660 57595 448 0 39 83 7 5 85 chain 4805 chr1 249250621 + 230708405 230708501 MER4D 903 - 168 266 197303 52 25 27 19 chain 27467 chr1 249250621 + 230736961 230737392 LTR7 482 + 0 482 94751 138 74 123 44 0 1 59 1 2 115 chain 282152 chr1 249250621 + 230737394 230741168 HERVH-int 3825 + 0 3825 14527 333 1 0 197 1 0 40 2 1 9 1 0 12 24 12 14 1 0 13 3 0 13 0 39 13 2 1 14 65 0 12 0 1 5 1 0 50 1 0 364 0 10 532 4 31 299 0 10 321 0 2 115 0 1 58 5 6 433 1 0 13 166 1 95 9 11 39 8 218 260 0 2 225 chain 28323 chr1 249250621 + 230744406 230744838 LTR7 482 + 0 482 91854 138 74 123 44 0 1 176 chain 6523 chr1 249250621 + 230774156 230774312 LTR37A 408 - 191 334 181065 25 44 36 22 8 2 4 0 1 53 chain 355837 chr1 249250621 + 230789840 230794546 L1P2 5180 - 2 4691 11453 4 1 0 38 1 0 48 0 1 4 0 1 193 0 4 88 3 1 91 1 0 4 0 1 36 7 24 539 1 0 792 0 1 118 8 0 1 1 0 320 1 31 405 0 3 41 0 4 177 0 2 74 0 1 110 8 10 539 0 1 422 1 0 4 4 5 58 23 42 142 10 25 32 43 22 153 53 0 4 23 0 12 2 1 25 21 14 4 0 1 16 chain 6100 chr1 249250621 + 230824951 230825025 MER2B 336 + 182 256 184404 74 chain 13272 chr1 249250621 + 230852651 230852798 LTR5A 1029 + 0 147 147204 147 chain 18793 chr1 249250621 + 230852799 230853012 LTR5A 1029 - 803 1029 130698 66 0 13 147 chain 4734 chr1 249250621 + 230865533 230865620 LTR73 568 + 0 78 198117 43 24 15 20 chain 14458 chr1 249250621 + 230865624 230865807 AluSc8 310 + 0 185 143024 4 1 0 126 2 5 50 chain 12825 chr1 249250621 + 230903613 230903756 L1PA4 6152 + 5995 6138 148951 143 chain 9685 chr1 249250621 + 230971085 230971210 AluYc 301 + 161 282 162172 105 8 4 12 chain 22078 chr1 249250621 + 230978073 230978444 L1PB1 5432 + 5050 5392 119892 53 1 2 9 3 0 32 1 0 9 7 3 10 2 0 52 2 1 15 1 0 44 1 0 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 26 1 0 20 chain 10308 chr1 249250621 + 231007576 231007754 MSTC 436 + 0 166 159093 11 1 2 31 0 1 4 8 7 86 11 0 19 2 0 5 chain 8208 chr1 249250621 + 231013651 231013752 Tigger1a_Art 216 - 0 101 169909 101 chain 23210 chr1 249250621 + 231017581 231017870 AluSz 310 + 14 310 114643 177 0 1 81 1 7 30 chain 27933 chr1 249250621 + 231040010 231040312 AluYa5 310 - 9 310 93234 175 1 0 126 chain 14410 chr1 249250621 + 231049933 231050111 Tigger2a 444 + 0 181 143182 102 3 6 73 chain 53093 chr1 249250621 + 231120272 231120898 LTR6A 649 - 16 649 56963 88 0 8 105 1 0 432 chain 265090 chr1 249250621 + 231140338 231143908 L1PB2 3958 + 178 3838 15437 49 5 2 116 0 2 109 0 6 7 11 10 122 1 5 38 4 0 168 0 2 150 0 1 45 17 16 254 1 0 5 0 1 47 0 5 240 0 5 176 0 1 3 3 0 125 0 5 33 4 0 356 11 13 122 14 14 52 0 2 295 0 2 142 8 7 40 0 1 91 1 0 25 0 5 66 9 11 80 6 75 38 1 0 4 0 4 6 7 6 4 0 1 10 1 0 5 0 1 35 2 0 12 5 0 18 0 4 67 1 0 77 1 0 62 1 0 74 2 0 22 1 0 63 chain 30670 chr1 249250621 + 231181829 231182274 LTR2 463 - 0 462 83092 56 1 0 9 37 39 95 0 14 42 0 1 89 8 9 108 chain 8075 chr1 249250621 + 231198718 231198821 MLT1B 390 + 75 179 170615 86 0 1 17 chain 186432 chr1 249250621 + 231215307 231217466 L1P2 5180 - 2091 4253 20386 762 4 0 116 0 6 1167 0 1 110 chain 30218 chr1 249250621 + 231263033 231263382 L1PA5 6144 + 5780 6130 84135 98 2 1 170 0 2 79 chain 109700 chr1 249250621 + 231263604 231264816 SVA_D 2077 + 0 1740 34280 14 11 0 15 0 4 845 0 535 327 chain 4215 chr1 249250621 + 231270830 231270889 L1MB3 1562 - 7 65 204348 32 1 0 26 chain 28944 chr1 249250621 + 231303065 231303367 AluYa5 310 - 8 310 89252 302 chain 10570 chr1 249250621 + 231315277 231315406 MER85 139 - 0 139 157954 40 0 10 89 chain 52197 chr1 249250621 + 231347702 231348345 LTR6A 649 - 0 646 57504 20 0 1 196 1 0 413 0 3 13 chain 114771 chr1 249250621 + 231424372 231425786 LTR12C 1709 - 0 1709 32854 82 1 0 399 11 4 106 4 2 4 1 0 85 0 278 138 9 37 574 chain 6051 chr1 249250621 + 231431290 231431372 MER44B 551 - 401 483 184804 82 chain 6293 chr1 249250621 + 231453568 231453826 LTR12D 1347 + 716 1197 182862 35 168 391 55 chain 13777 chr1 249250621 + 231456806 231457000 L1PA16 3655 - 63 253 145345 15 3 0 158 1 2 7 2 0 8 chain 10111 chr1 249250621 + 231515971 231516081 AluYc 301 + 181 291 160036 110 chain 36938 chr1 249250621 + 231564519 231564985 THE1D-int 1627 - 0 471 73605 126 0 5 51 0 1 86 2 0 107 5 6 89 chain 105569 chr1 249250621 + 231565669 231567084 LTR12C 1709 - 0 1709 35357 84 8 7 390 47 20 4 0 1 85 12 169 95 0 118 173 0 3 34 2 1 144 0 43 37 1 2 299 chain 23039 chr1 249250621 + 231569910 231570194 AluSp 311 + 0 286 115453 63 0 2 221 chain 3792 chr1 249250621 + 231575684 231575728 MSTC 436 + 2 46 210496 44 chain 163955 chr1 249250621 + 231583725 231586572 L1PBa 3878 + 1519 3744 22813 93 633 8 200 1 2 9 1 0 16 13 14 61 2 1 449 1 0 4 8 9 313 0 1 13 1 0 33 0 3 48 0 3 242 3 0 11 1 2 167 3 0 126 0 1 340 4 0 9 0 8 10 2 1 21 2 0 7 chain 7868 chr1 249250621 + 231588185 231588278 L1P4 1494 + 201 294 171880 93 chain 129380 chr1 249250621 + 231589279 231590759 SVA_B 1603 + 0 1603 28228 19 25 1 19 1 25 524 0 1 235 0 124 42 1 0 19 2 1 593 chain 9392 chr1 249250621 + 231596827 231596944 Tigger1 2417 - 1 118 163605 117 chain 44092 chr1 249250621 + 231606955 231607427 L1PA3long 6157 - 279 751 64104 472 chain 26194 chr1 249250621 + 231607427 231607718 L1PA3long 6157 + 5866 6157 99224 291 chain 27137 chr1 249250621 + 231626914 231627207 AluYc3 301 - 9 301 95803 171 1 0 121 chain 21953 chr1 249250621 + 231628336 231628612 AluSc 308 + 0 281 120407 61 3 4 66 3 0 38 0 6 27 0 1 78 chain 5303 chr1 249250621 + 231632376 231632438 Tigger6a 1079 + 1017 1079 191998 62 chain 14208 chr1 249250621 + 231642166 231642383 Tigger1 2417 - 2032 2260 143854 34 0 4 6 28 35 149 chain 5762 chr1 249250621 + 231675120 231675259 Tigger4a 237 - 2 237 187526 18 28 121 13 19 22 61 chain 23465 chr1 249250621 + 231678650 231678935 AluSg4 309 + 8 292 113292 115 1 0 169 chain 5879 chr1 249250621 + 231679075 231679228 Tigger4a 237 - 0 162 186388 55 53 75 21 13 0 11 chain 30530 chr1 249250621 + 231705148 231705598 MLT2A1 477 - 0 477 83369 8 2 0 45 17 48 130 9 8 38 0 1 19 0 1 10 4 1 33 1 0 25 0 1 109 chain 39331 chr1 249250621 + 231706078 231706523 L1PA2 6032 + 5582 6032 70280 214 0 4 199 1 2 31 chain 74517 chr1 249250621 + 231729049 231729876 L1PA3long 6157 + 5330 6156 46264 822 1 0 4 chain 61506 chr1 249250621 + 231743791 231745336 L1PA14 3548 - 92 1001 52114 42 1 0 16 1 0 5 1 0 16 4 2 34 342 12 77 0 1 30 1 0 83 1 0 7 2 0 17 11 7 96 26 22 36 2 0 14 298 1 18 4 0 170 1 17 45 4 1 140 chain 43145 chr1 249250621 + 231772546 231773092 L1PA8 5853 - 0 539 65235 91 3 2 19 2 1 40 7 0 7 1 7 7 1 0 72 2 0 45 1 0 248 chain 102467 chr1 249250621 + 231776920 231778215 LTR12C 1709 - 0 1708 36142 84 1 0 309 15 15 73 11 15 17 0 366 365 0 1 75 8 51 73 1 2 60 1 0 202 chain 31103 chr1 249250621 + 231781275 231781643 L1PA6 6164 - 7 382 82336 138 1 8 229 chain 497093 chr1 249250621 + 231781847 231787968 L1PA5 6144 - 97 6144 7003 16 1 0 337 1 0 60 61 6 335 3 0 572 7 12 757 0 2 274 0 1 294 7 6 219 0 2 567 0 1 47 1 0 227 5 0 549 6 7 349 5 0 6 1 6 226 34 25 192 25 0 427 0 1 44 7 6 260 1 0 76 27 42 30 1 2 64 chain 81198 chr1 249250621 + 231791054 231792350 L1PB3 3668 - 54 1328 43087 15 22 18 12 7 3 26 15 13 24 1 0 3 1 0 11 27 11 76 15 14 43 6 5 49 1 0 121 2 1 52 0 1 109 0 1 4 3 4 11 2 0 114 7 8 11 5 9 16 9 15 148 1 0 294 1 0 32 chain 338772 chr1 249250621 + 231792957 231797667 L1PA11 4918 - 340 4909 11930 11 2 0 13 1 0 13 10 6 15 8 3 9 4 0 9 12 11 16 2 0 78 3 2 24 0 145 87 0 1 384 2 1 51 5 7 373 0 2 200 0 1 396 2 0 461 0 4 41 1 0 26 28 25 19 0 3 39 0 1 43 0 1 243 0 1 200 0 3 65 21 16 68 0 3 25 0 1 44 1 0 99 0 1 52 1 3 37 299 0 182 0 25 260 0 1 79 0 1 303 1 0 126 2 1 5 2 0 33 1 0 51 3 1 13 1 0 30 3 8 9 1 0 26 2 0 26 1 0 7 chain 119206 chr1 249250621 + 231821512 231822980 THE1A-int 1579 - 95 1579 31334 236 0 9 243 0 2 27 1 3 263 0 3 698 chain 24342 chr1 249250621 + 231822980 231823332 THE1A 353 - 0 351 108408 228 37 36 11 1 0 6 2 0 7 0 2 15 0 1 45 chain 5555 chr1 249250621 + 231828715 231828871 MIR 256 - 30 181 189519 24 74 69 58 chain 22219 chr1 249250621 + 231836750 231837102 THE1B 368 - 0 368 119267 40 23 22 64 1 0 25 19 24 24 1 0 86 7 21 62 chain 48073 chr1 249250621 + 231864599 231865158 L1PA4 6152 - 9 570 60424 139 0 1 22 1 2 397 chain 53414 chr1 249250621 + 231881920 231882675 L1MA5A 2387 - 202 954 56748 28 0 3 44 2 1 40 4 6 30 1 0 81 1 2 207 4 0 3 6 0 112 0 1 60 1 0 9 8 11 114 chain 22031 chr1 249250621 + 231915750 231915996 L1PA2 6032 + 5786 6032 120103 246 chain 4393 chr1 249250621 + 231916020 231916075 MER49 923 + 868 923 202032 55 chain 71408 chr1 249250621 + 231916141 231916918 L1PA2 6032 + 5254 6032 47744 672 0 1 105 chain 26082 chr1 249250621 + 231937906 231938274 THE1D 372 + 0 372 99701 59 0 1 124 19 24 17 1 0 6 1 0 6 0 1 102 1 0 32 chain 30765 chr1 249250621 + 231965424 231965830 LTR7 482 - 7 482 82922 17 0 1 165 0 31 12 2 0 24 0 1 109 8 46 69 chain 280457 chr1 249250621 + 231967645 231970980 HERVH-int 3825 - 0 3825 14619 487 8 218 39 9 11 2233 15 14 44 1 0 21 1 2 17 0 268 90 16 17 31 1 0 215 0 11 107 chain 31484 chr1 249250621 + 231970987 231971394 LTR7 482 - 5 482 81668 182 0 31 39 0 1 109 8 46 69 chain 11843 chr1 249250621 + 231980235 231980415 MER4B 649 - 129 293 152857 44 1 0 51 5 0 4 10 0 65 chain 23066 chr1 249250621 + 231980419 231980701 AluY 311 + 29 311 115320 70 0 1 33 1 0 178 chain 3826 chr1 249250621 + 232005127 232005169 Tigger2a 444 + 145 187 209993 42 chain 14505 chr1 249250621 + 232026855 232027076 MER30 238 - 0 238 142875 36 11 8 67 4 17 78 8 15 17 chain 481393 chr1 249250621 + 232042921 232048481 L1PA5 6144 - 7 5557 7673 316 10 0 104 0 2 957 0 6 1028 1 0 4 2 3 42 1 0 106 4 0 410 0 2 1351 0 2 349 0 1 60 0 1 223 9 0 583 chain 26359 chr1 249250621 + 232052140 232052423 AluYa5 310 + 22 304 98578 110 1 0 172 chain 72907 chr1 249250621 + 232064175 232065029 L1P3 4156 - 564 1416 47065 92 1 0 26 1 0 734 chain 314209 chr1 249250621 + 232080533 232084361 L1PA7 6471 + 2651 6470 12843 336 31 12 745 0 2 865 7 13 189 0 1 168 1 0 632 1 0 72 1 5 8 4 0 254 0 10 13 11 4 490 chain 4188 chr1 249250621 + 232092608 232092657 MLT1G1 539 - 245 294 204734 49 chain 40246 chr1 249250621 + 232099418 232099882 LTR2 463 - 0 463 68948 184 1 0 279 chain 67350 chr1 249250621 + 232105347 232106105 L1PA5 6144 - 0 758 49508 758 chain 103515 chr1 249250621 + 232131088 232132221 L1PA3long 6157 - 0 1133 35861 1133 chain 112932 chr1 249250621 + 232141955 232143517 THE1C-int 1605 + 40 1594 33394 13 8 9 48 0 54 281 85 11 292 2 11 538 0 3 77 3 4 176 0 1 14 3 0 22 chain 17082 chr1 249250621 + 232143527 232143855 THE1C 375 + 0 327 135375 14 2 0 49 24 25 21 5 6 5 1 0 8 7 11 39 1 0 8 8 9 33 13 9 90 chain 6393 chr1 249250621 + 232147887 232147999 LTR34 700 - 578 700 182078 25 7 20 52 1 0 9 6 4 12 chain 228540 chr1 249250621 + 232204805 232208903 L1PB2 3958 - 120 3417 17386 60 14 29 68 1 0 64 1 0 72 1 0 90 1 0 4 11 30 39 339 5 16 1 0 46 10 8 15 1 9 66 4 0 293 1 0 171 9 7 59 0 4 76 0 4 99 1 0 14 7 0 8 2 0 252 5 0 88 0 1 20 1 11 120 0 2 14 18 16 42 0 6 102 12 10 34 0 1 73 0 4 95 0 1 8 214 0 64 12 13 8 1 0 78 314 1 62 13 21 79 7 0 72 3 7 129 0 2 129 0 2 10 0 1 72 0 5 98 13 16 172 chain 16310 chr1 249250621 + 232207353 232207560 AluYf4 310 - 16 225 137460 79 8 9 16 0 1 104 chain 375894 chr1 249250621 + 232214294 232218607 L1PA5 6144 + 1816 6142 10889 932 0 1 39 2 0 362 0 16 4 1 0 82 0 2 453 2 0 616 7 5 169 0 1 353 0 1 442 1 0 848 chain 82619 chr1 249250621 + 232235321 232236474 MER11A 1151 - 0 1151 42498 60 7 6 41 45 41 113 1 0 28 3 0 28 0 1 15 0 1 256 27 12 137 0 1 22 0 1 60 0 2 21 0 11 66 8 7 22 2 0 112 0 8 79 chain 3967 chr1 249250621 + 232248994 232249094 L1PA16 3655 - 314 412 207885 16 41 39 43 chain 40563 chr1 249250621 + 232253860 232254311 LTR7 482 + 0 482 68489 267 0 31 184 chain 298738 chr1 249250621 + 232254313 232257959 HERVH-int 3825 + 0 3816 13492 212 4 15 87 0 1 217 5 0 38 1 0 9 2 1 9 4 0 14 7 1 14 1 0 13 3 0 7 23 0 15 42 0 38 0 20 18 2 1 27 0 3 19 1 0 452 15 0 450 8 35 1404 0 210 124 0 1 361 chain 40797 chr1 249250621 + 232259240 232259691 LTR7 482 + 0 482 68180 230 0 31 221 chain 104123 chr1 249250621 + 232291061 232292322 L1PA7 6471 + 5203 6469 35713 422 17 21 660 16 15 135 0 2 11 chain 48836 chr1 249250621 + 232293721 232294508 L1PA15 4387 + 3548 4327 59850 46 0 1 4 1 0 26 0 9 35 0 1 6 1 0 127 11 9 19 4 0 6 1 0 25 0 4 24 2 0 16 0 2 25 1 0 167 6 5 15 27 26 38 2 1 17 4 0 15 1 0 50 6 3 44 3 1 12 chain 8521 chr1 249250621 + 232298443 232298677 L1MB3 1562 + 1000 1235 168184 43 98 100 54 8 7 31 chain 27996 chr1 249250621 + 232298696 232299047 THE1C 375 - 0 363 93011 25 1 0 144 0 3 83 9 19 89 chain 10341 chr1 249250621 + 232301085 232301379 L1PB3 3668 + 3297 3528 158937 62 5 6 16 13 12 53 97 36 13 1 0 8 2 1 24 chain 31404 chr1 249250621 + 232332297 232332822 MLT2A1 477 - 8 477 81811 46 107 45 30 1 0 175 1 5 16 1 3 6 0 1 142 chain 370955 chr1 249250621 + 232332822 232337384 HERVL-int 5654 - 0 4633 11058 148 12 13 45 24 0 17 0 1 6 0 9 196 0 1 85 0 7 348 0 1 5 6 0 10 0 6 85 0 1 423 14 11 182 1 2 160 3 4 297 0 13 224 0 1 273 0 3 23 0 1 1182 0 55 309 3 4 384 11 12 86 chain 32058 chr1 249250621 + 232365374 232365806 LTR7 482 - 0 482 80761 176 0 1 9 0 31 42 1 12 45 21 28 138 chain 261324 chr1 249250621 + 232367077 232370293 HERVH-int 3825 - 9 3825 15630 478 8 218 665 0 6 11 0 425 296 4 32 25 0 1 436 15 0 444 1 0 49 2 1 7 0 20 46 1 0 5 50 6 14 3 0 12 1 0 15 28 0 24 2 1 9 1 0 38 5 0 309 0 11 212 chain 39788 chr1 249250621 + 232370295 232370745 LTR7 482 - 0 482 69643 24 0 1 162 0 31 264 chain 76151 chr1 249250621 + 232377190 232378308 L1MA2 4263 + 2990 4114 45391 43 0 1 128 0 7 42 3 6 21 17 10 115 0 3 152 0 14 34 1 0 13 8 6 77 1 0 130 17 14 146 25 23 58 0 1 23 14 7 5 0 1 35 1 0 9 chain 29686 chr1 249250621 + 232423127 232423446 AluYb8 318 - 1 318 85879 191 2 0 126 chain 4414 chr1 249250621 + 232426499 232426570 L1MA5 2750 - 89 158 201747 15 1 0 14 2 1 39 chain 46963 chr1 249250621 + 232449584 232450203 LTR12_ 688 - 0 688 61240 48 0 1 252 12 16 121 3 2 85 1 0 15 5 71 77 chain 16700 chr1 249250621 + 232453205 232453541 MLT2D 439 + 0 332 136408 34 7 4 7 0 8 14 30 6 36 1 2 27 0 1 59 28 41 42 0 8 5 8 0 38 chain 138288 chr1 249250621 + 232466980 232468849 SVA_D 2077 + 200 2077 26437 518 10 13 35 51 8 34 116 0 94 3 1 9 2 0 5 0 138 201 81 0 101 6 120 65 1 0 420 2 1 96 1 0 18 chain 6470 chr1 249250621 + 232467628 232467731 SVA_D 2077 + 615 718 127650 103 chain 5609 chr1 249250621 + 232468058 232468139 SVA_D 2077 + 1029 1129 80411 7 0 2 61 0 17 13 chain 48032 chr1 249250621 + 232478227 232478760 L1PA5 6144 - 1731 2265 60388 291 0 1 242 chain 149822 chr1 249250621 + 232478760 232480445 L1PA5 6144 + 4442 6129 24641 685 1 2 175 0 1 824 chain 21767 chr1 249250621 + 232517908 232518195 AluSc8 310 + 19 308 121147 113 0 3 132 17 16 25 chain 85885 chr1 249250621 + 232647491 232648552 L1PA8 5853 + 4713 5853 41200 4 0 1 289 0 2 84 0 1 83 0 2 321 0 1 63 1 0 44 2 0 18 2 79 34 3 2 19 1 0 93 chain 4409 chr1 249250621 + 232715495 232715639 LTR49 580 - 46 203 201818 13 0 4 23 78 87 30 chain 41514 chr1 249250621 + 232715639 232716249 MER41B 635 - 0 620 67262 68 12 17 42 0 1 39 3 2 77 21 22 19 6 8 154 1 2 53 2 3 113 chain 20528 chr1 249250621 + 232723442 232723804 THE1B 368 + 0 368 125551 82 34 35 60 61 66 125 chain 20860 chr1 249250621 + 232738100 232738363 AluSg7 307 - 32 296 124430 137 6 7 120 chain 22237 chr1 249250621 + 232740373 232740767 MSTA 426 + 9 414 119176 73 4 5 14 7 12 15 24 31 17 0 2 33 1 0 13 36 34 51 1 0 105 chain 19912 chr1 249250621 + 232748608 232748969 THE1A 353 + 0 353 127430 13 2 0 34 0 1 13 38 33 17 0 2 6 20 18 26 12 11 151 1 0 28 chain 24209 chr1 249250621 + 232759080 232759379 AluY 311 + 11 308 109157 122 2 0 175 chain 29421 chr1 249250621 + 232775537 232775843 AluYa5 310 - 3 309 86981 306 chain 15883 chr1 249250621 + 232775864 232776103 Ricksha_0 1343 + 1084 1308 138700 102 3 0 53 6 4 43 2 0 6 10 2 14 chain 24317 chr1 249250621 + 232779660 232780014 THE1A 353 - 0 353 108560 37 2 3 193 2 0 7 3 5 14 5 4 42 0 1 32 2 0 15 chain 14233 chr1 249250621 + 232807213 232807527 L1MA3 4352 + 4063 4352 143782 30 26 11 98 1 3 22 6 3 28 2 0 24 55 48 22 chain 3175 chr1 249250621 + 232820743 232820780 MIRb 242 + 91 128 221420 37 chain 47804 chr1 249250621 + 232853514 232854076 LTR10C 591 - 0 591 60618 490 0 28 31 0 1 41 chain 20224 chr1 249250621 + 232854848 232855122 LTR10C 591 - 62 337 126457 11 5 8 16 13 12 24 1 0 204 chain 21066 chr1 249250621 + 232855123 232855378 LTR10C 591 - 337 591 123672 221 2 0 14 0 1 18 chain 48571 chr1 249250621 + 232881264 232881842 LTR10C 591 - 0 581 60057 81 11 16 49 2 0 435 chain 36158 chr1 249250621 + 232884544 232885117 LTR10B1 532 + 0 532 74701 17 18 19 138 8 0 16 14 0 13 35 17 11 4 2 299 chain 21808 chr1 249250621 + 232914011 232914290 AluY 311 + 12 301 120991 32 5 21 58 1 0 3 5 0 175 chain 87757 chr1 249250621 + 232921264 232922256 L1PA5 6144 - 6 998 40460 992 chain 24120 chr1 249250621 + 232922257 232922567 AluSp 311 - 17 309 109637 166 19 1 125 chain 7512 chr1 249250621 + 232936977 232937074 L1PA16 3655 - 64 158 174082 14 3 0 80 chain 123525 chr1 249250621 + 232959333 232960661 L1PA2 6032 + 4704 6032 29869 1328 chain 113291 chr1 249250621 + 232962254 232964298 L1PB1 5432 - 18 1654 33282 10 2 1 11 1 0 22 1 0 11 27 0 8 8 30 13 48 34 31 8 7 15 2 1 51 2 0 11 4 0 12 2 1 7 1 0 22 35 0 11 3 2 33 12 7 248 327 10 9 8 0 170 3 0 193 3 1 63 0 1 149 0 1 7 1 0 244 6 5 55 0 1 54 6 0 74 chain 24333 chr1 249250621 + 232964298 232964591 L1PB1 5432 + 3408 3701 108466 293 chain 23362 chr1 249250621 + 233005341 233005617 AluSg7 307 - 19 296 113859 160 1 2 115 chain 117544 chr1 249250621 + 233006365 233007754 LTR12C 1709 - 0 1709 31947 74 1 0 407 0 4 107 2 0 6 1 319 588 0 1 95 5 4 14 0 1 89 chain 58034 chr1 249250621 + 233038528 233039389 MER4D1 891 - 9 891 53959 55 0 1 70 35 27 32 35 36 138 0 6 28 3 21 10 3 4 24 1 0 14 1 0 227 0 2 135 0 1 9 0 1 41 chain 11457 chr1 249250621 + 233046695 233046858 MER30 238 + 61 238 154479 43 4 0 9 4 25 56 3 0 44 chain 49080 chr1 249250621 + 233049839 233050425 LTR10C 591 - 5 588 59686 76 0 2 13 0 2 24 7 0 466 chain 26319 chr1 249250621 + 233058825 233059178 THE1A 353 - 0 353 98742 39 1 2 202 1 0 25 0 1 9 4 3 72 chain 26887 chr1 249250621 + 233062962 233063319 THE1B 368 - 1 368 96679 74 1 0 5 2 1 87 2 0 28 1 0 113 0 15 44 chain 19166 chr1 249250621 + 233128439 233128779 THE1D 372 + 19 370 129629 83 4 3 40 69 79 85 0 3 28 1 0 30 chain 161044 chr1 249250621 + 233138035 233139892 L1PA7 6471 + 4592 6466 23189 260 0 1 102 7 8 651 0 3 699 1 0 78 9 22 50 chain 94240 chr1 249250621 + 233179158 233180191 L1PA3long 6157 - 4 1036 38280 290 1 0 742 chain 123037 chr1 249250621 + 233183361 233187430 L1PA16 3655 + 6 3578 30032 17 1 0 12 0 3 13 2 0 49 56 48 147 0 2 77 16 15 143 2097 1623 20 11 16 37 6 5 23 24 22 45 0 1 108 2 0 202 5 0 4 0 1 7 6 18 13 1 0 44 0 1 78 0 1 76 9 10 4 1 0 12 2 1 18 1 0 63 1 0 97 3 0 3 14 0 119 2 0 43 23 22 21 2 0 85 2 1 202 chain 19362 chr1 249250621 + 233185769 233185991 L1PA7 6471 + 6245 6467 129040 222 chain 7392 chr1 249250621 + 233206215 233206446 L1MD1 2063 + 110 333 174814 5 0 1 45 0 2 4 1 0 17 1 0 15 41 39 18 47 48 9 8 0 20 chain 29182 chr1 249250621 + 233210058 233210369 AluYa5 310 + 0 310 88135 132 1 0 178 chain 41426 chr1 249250621 + 233243526 233244046 MER41A 554 + 33 554 67384 197 0 1 323 chain 16230 chr1 249250621 + 233299866 233300538 L1MB1 2102 + 1425 2007 137671 63 18 20 45 77 87 18 23 19 11 2 0 49 1 0 5 67 66 25 204 110 64 chain 28380 chr1 249250621 + 233305110 233305406 AluYg6 310 + 0 296 91661 296 chain 49795 chr1 249250621 + 233312789 233313355 LTR10C 591 + 3 570 59161 554 0 1 12 chain 24491 chr1 249250621 + 233336494 233336794 AluSx1 309 + 9 305 107592 102 13 9 185 chain 4636 chr1 249250621 + 233336798 233336854 L1PA8 5853 + 5794 5850 199239 56 chain 22889 chr1 249250621 + 233359207 233359501 L1PA8 5853 - 3 291 116148 90 1 0 19 2 1 52 1 0 9 1 0 71 2 0 46 chain 21452 chr1 249250621 + 233360569 233360860 L1PA8 5853 + 5567 5853 122327 43 2 0 72 1 0 6 6 5 47 2 1 21 1 0 81 0 1 9 chain 26096 chr1 249250621 + 233395216 233395559 L1PA8 5853 - 0 348 99639 93 1 0 19 2 1 61 2 1 64 0 9 43 1 0 57 chain 10810 chr1 249250621 + 233395636 233395827 MER2 342 + 132 320 156939 130 38 36 17 1 0 5 chain 35515 chr1 249250621 + 233407348 233407758 L1PB1 5432 - 1082 1492 75533 410 chain 76929 chr1 249250621 + 233407761 233408888 L1PB1 5432 + 4341 5427 45007 146 9 8 74 3 4 41 0 1 6 5 0 482 1 0 11 3 0 24 1 0 8 1 0 12 5 1 9 2 0 49 5 4 15 1 0 45 1 0 15 1 0 4 19 8 19 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 25653 chr1 249250621 + 233427083 233427374 AluSp 311 + 10 302 101477 131 0 1 160 chain 122 chr1 249250621 + 233459081 233459145 MER2 342 - 64 128 187274 64 chain 75064 chr1 249250621 + 233459187 233460343 Tigger1 2417 + 54 1258 45986 29 7 8 21 1 0 44 0 1 84 1 0 15 88 97 4 1 0 21 0 2 178 5 9 15 0 5 203 0 14 8 1 0 47 0 3 177 0 3 5 8 16 44 17 19 132 chain 144 chr1 249250621 + 233462031 233462106 MER2 342 - 128 206 187274 11 3 6 61 chain 141963 chr1 249250621 + 233479853 233481472 L1PA6 6164 + 4530 6149 25830 1619 chain 24772 chr1 249250621 + 233492869 233493160 L1PA5 6144 + 5853 6144 106049 291 chain 54857 chr1 249250621 + 233531311 233532017 LTR12_ 688 - 0 688 55796 501 1 0 4 37 20 163 chain 54461 chr1 249250621 + 233551422 233552193 MER4E1 777 - 0 775 56061 212 58 37 62 13 14 19 0 1 80 0 19 199 0 3 112 1 2 15 chain 4231 chr1 249250621 + 233597501 233597560 Ricksha_c 1012 - 414 472 204163 15 1 0 43 chain 23871 chr1 249250621 + 233602103 233602393 LTR12D 1347 + 857 1347 111080 72 0 200 218 chain 42298 chr1 249250621 + 233607319 233608243 MER41A 554 + 4 552 66270 174 6 7 232 381 0 45 4 9 4 1 0 77 chain 17944 chr1 249250621 + 233607736 233608103 LTR7 482 + 0 475 132992 23 38 111 73 20 21 25 10 41 13 1 2 56 4 5 49 13 14 42 chain 16215 chr1 249250621 + 233609545 233610085 LTR22B 500 - 0 500 137707 25 3 5 110 57 60 24 203 154 15 17 20 5 0 2 15 1 0 65 chain 8535 chr1 249250621 + 233618551 233618710 MER30 238 - 9 180 168104 20 14 12 55 11 29 6 4 0 49 chain 9865 chr1 249250621 + 233622626 233622825 HERV35I-int 1679 + 564 742 161264 36 1 0 12 3 0 13 51 35 37 1 0 45 chain 26856 chr1 249250621 + 233645937 233646240 L1PA5 6144 - 1 304 96786 303 chain 49878 chr1 249250621 + 233746931 233747543 LTR14C 587 - 0 587 59102 317 25 0 270 chain 5954 chr1 249250621 + 233759049 233759126 L1MA5A 2387 + 2230 2306 185650 66 1 0 10 chain 26538 chr1 249250621 + 233806149 233806508 THE1B 368 - 0 368 97895 75 1 0 101 6 2 9 10 9 113 0 15 44 chain 31200 chr1 249250621 + 233819194 233819626 LTR7 482 - 0 482 82160 176 0 1 9 0 31 42 1 12 45 21 28 138 chain 256984 chr1 249250621 + 233820872 233824303 HERVH-int 3825 - 0 3389 15885 225 0 2 260 8 218 39 9 11 89 8 8 1256 4 32 25 0 1 217 0 1 215 15 0 385 13 16 44 0 3 13 0 2 6 0 1 45 0 20 35 24 0 18 33 7 13 2 1 13 256 14 10 1 0 10 1 0 38 5 0 96 chain 10687 chr1 249250621 + 233824383 233824501 HERVH-int 3825 + 28 146 157465 118 chain 27825 chr1 249250621 + 233824525 233824950 LTR7 482 - 7 482 93602 167 0 1 11 0 31 33 76 94 138 chain 24001 chr1 249250621 + 233835169 233835459 AluY 311 + 0 285 110324 118 4 0 15 7 6 146 chain 19014 chr1 249250621 + 233842646 233842946 THE1D 372 - 0 309 130076 123 9 15 41 30 33 97 chain 57645 chr1 249250621 + 233859815 233860632 LTR12D 1347 + 405 1346 54162 131 0 31 19 9 8 84 25 0 10 0 18 88 0 8 124 3 2 36 0 1 30 6 1 26 3 0 22 0 101 201 chain 30336 chr1 249250621 + 233865155 233865472 AluYb9 318 + 0 317 83829 317 chain 509933 chr1 249250621 + 233899917 233906038 L1PA6 6164 - 4 6164 6172 7 4 0 207 1 0 1036 1 0 267 1 0 150 2 3 117 5 9 147 0 1 172 0 1 418 2 0 102 0 1 131 7 13 187 0 12 163 0 1 536 0 1 153 2 0 144 2 1 202 2 1 693 0 1 471 1 18 91 1 0 238 7 5 295 25 28 113 5 11 13 chain 33189 chr1 249250621 + 233920819 233921266 L1PA8 5853 + 5410 5853 78912 110 3 5 39 1 0 44 2 0 75 6 5 52 7 6 14 1 0 93 chain 17354 chr1 249250621 + 233923027 233923237 L1PA5 6144 + 5931 6140 134643 195 1 0 14 chain 53547 chr1 249250621 + 233928992 233929779 L1PA13 3608 + 2699 3477 56645 113 9 11 75 13 14 248 1 0 19 0 3 91 1 0 3 1 0 45 19 18 52 11 5 48 8 4 18 1 0 11 chain 4834 chr1 249250621 + 233934315 233934376 MER63D 473 - 107 168 196985 61 chain 87953 chr1 249250621 + 233934583 233935678 MER11B 1079 - 0 1079 40392 19 10 0 29 0 1 153 0 2 102 1 3 29 10 0 199 1 0 4 0 1 125 0 1 4 1 0 222 1 0 185 chain 3498 chr1 249250621 + 233943581 233943619 tRNA-Phe-TTY 73 - 35 73 215389 38 chain 5398 chr1 249250621 + 233955683 233955796 L1MB1 2102 - 115 195 190998 30 30 0 15 2 0 20 1 0 15 chain 530775 chr1 249250621 + 233957719 233964133 L1PA7 6471 + 0 6470 4110 405 15 0 484 0 9 665 1 0 205 3 2 327 0 3 124 0 1 132 0 39 71 6 0 11 0 1 160 0 2 248 6 10 197 0 4 134 9 13 302 9 13 19 0 3 50 0 1 70 0 1 130 1 0 661 0 1 4 2 1 1207 0 1 392 2 0 6 0 2 241 0 3 115 chain 10042 chr1 249250621 + 233970631 233970820 L1PB1 5432 - 140 318 160367 12 1 0 44 1 0 11 7 6 51 2 0 9 5 1 11 1 0 13 5 4 16 chain 16831 chr1 249250621 + 233972547 233972906 L1PB1 5432 + 5105 5430 136039 9 3 0 24 1 0 6 4 3 11 5 1 8 2 0 53 6 5 11 1 0 44 1 0 16 2 0 9 14 6 16 2 0 5 1 0 10 6 4 24 1 0 21 4 3 10 1 0 18 2 0 8 chain 44089 chr1 249250621 + 233973947 233974488 L1PA7 6471 + 5925 6470 64106 440 1 0 32 0 2 5 2 1 50 0 4 11 chain 6079 chr1 249250621 + 233985191 233985482 L1MD1 2063 + 1563 1856 184580 37 0 1 29 167 171 18 19 16 21 chain 5932 chr1 249250621 + 233993593 233993672 MER4C 627 - 551 627 185858 19 2 0 35 1 0 22 chain 19148 chr1 249250621 + 233997357 233997599 AluSg7 307 - 9 254 129688 20 3 5 141 0 1 78 chain 22974 chr1 249250621 + 234024834 234025174 THE1B 368 - 12 360 115739 46 11 10 91 15 9 136 5 20 36 chain 29574 chr1 249250621 + 234026092 234026469 THE1C 375 + 0 375 86302 125 3 0 14 0 1 36 0 1 173 1 0 25 chain 28133 chr1 249250621 + 234051353 234051711 THE1B 368 - 0 368 92530 15 0 1 59 1 0 93 4 0 28 1 0 113 0 15 44 chain 455425 chr1 249250621 + 234057426 234062753 L1PA5 6144 - 26 5344 8563 130 0 7 43 1 3 34 0 1 329 0 1 267 14 9 871 0 1 435 0 3 30 0 1 696 0 12 939 1 0 59 0 2 874 0 1 200 9 0 217 25 0 153 chain 51569 chr1 249250621 + 234066655 234067282 L1PA7 6471 + 5080 5700 57910 128 0 1 56 0 1 351 22 13 70 chain 63696 chr1 249250621 + 234067283 234068040 L1PA7 6471 + 5704 6458 51142 544 0 1 19 4 0 190 chain 26580 chr1 249250621 + 234079648 234080035 L1PREC2 3366 + 933 1324 97725 171 5 6 55 0 1 4 7 6 71 16 16 43 0 3 15 chain 25253 chr1 249250621 + 234084305 234084592 L1PA2 6032 - 0 285 103462 7 2 0 278 chain 17402 chr1 249250621 + 234086963 234087295 Tigger3c 601 + 60 410 134505 51 19 43 158 32 22 19 10 0 10 21 35 12 chain 22910 chr1 249250621 + 234107180 234107480 AluSg7 307 + 1 297 116063 21 10 4 105 0 1 6 1 2 157 chain 90328 chr1 249250621 + 234147555 234148565 LTR5B 1012 - 0 1012 39527 909 0 2 101 chain 5016 chr1 249250621 + 234153496 234153566 MADE1 96 + 5 91 194965 37 1 17 32 chain 57355 chr1 249250621 + 234173711 234174336 L1PA3long 6157 - 0 625 54312 625 chain 531026 chr1 249250621 + 234185392 234191530 L1PA5 6144 - 7 6144 4078 925 0 1 553 1 0 1072 0 2 83 0 1 330 1 0 74 0 1 698 0 3 85 6 0 589 1 2 343 0 2 203 6 0 429 1 2 197 14 1 392 0 14 135 chain 53665 chr1 249250621 + 234198885 234199545 PABL_A 660 - 0 660 56570 105 0 4 316 2 0 145 7 5 85 chain 30171 chr1 249250621 + 234212733 234213049 AluYb9 318 - 2 318 84272 316 chain 16651 chr1 249250621 + 234213049 234213348 THE1D 372 - 58 354 136526 90 1 0 24 32 34 21 6 10 56 9 10 14 9 0 37 chain 7043 chr1 249250621 + 234232946 234233027 L1P5 443 - 183 264 177161 81 chain 3998 chr1 249250621 + 234243176 234243219 MLT1B 390 - 79 122 207412 43 chain 52592 chr1 249250621 + 234257317 234257942 L1PA6 6164 - 5 626 57240 391 5 1 229 chain 65984 chr1 249250621 + 234258211 234259085 L1PA8 5853 - 0 872 50108 93 1 0 19 3 2 46 20 18 53 0 4 7 3 1 46 1 0 8 3 0 472 0 2 73 0 2 26 chain 13463 chr1 249250621 + 234281346 234281564 MER2 342 + 94 329 146472 15 1 0 41 0 15 53 6 7 36 9 10 10 0 1 47 chain 67319 chr1 249250621 + 234287998 234288806 L1PA7 6471 - 17 818 49521 158 0 7 609 15 1 26 chain 28855 chr1 249250621 + 234312720 234313092 THE1B 368 + 0 368 89645 172 2 1 19 2 0 102 1 0 74 chain 23974 chr1 249250621 + 234323700 234323998 AluSc8 310 + 0 299 110486 13 6 5 114 0 3 131 1 0 33 chain 395937 chr1 249250621 + 234324501 234330327 L1PB1 5432 + 11 5418 10247 11 6 0 229 5 0 14 1 0 138 22 11 35 19 22 73 4 3 6 0 1 173 0 1 34 19 15 52 5 8 223 6 7 162 0 2 173 13 18 324 0 4 17 3 0 77 0 4 127 1 0 45 381 0 40 1 2 175 16 18 52 1 0 187 7 0 184 3 0 164 3 0 107 0 1 56 1 2 6 1 0 45 18 23 101 0 2 208 0 6 215 0 1 111 6 1 34 0 3 207 0 4 575 1 0 9 11 12 55 3 0 170 1 0 108 19 9 138 1 0 43 9 19 25 1 0 8 1 0 10 24 19 32 0 1 5 2 0 7 3 2 14 1 0 45 1 0 15 24 12 19 2 0 5 9 8 6 2 0 23 2 1 21 1 0 13 1 0 14 chain 23204 chr1 249250621 + 234345705 234346036 THE1B 368 + 1 354 114667 43 6 21 101 10 9 131 5 13 35 chain 25399 chr1 249250621 + 234347623 234347969 THE1B 368 + 0 368 102689 44 0 6 6 0 9 98 10 9 134 5 13 49 chain 143251 chr1 249250621 + 234402624 234404188 SVA_E 1901 - 0 1901 25607 607 0 127 179 0 171 160 0 1 97 0 40 195 3 0 179 1 0 57 1 3 85 chain 34697 chr1 249250621 + 234414667 234415134 MER4A1 472 - 0 472 76629 58 21 23 279 0 1 10 0 2 99 chain 70615 chr1 249250621 + 234437029 234437895 L1PA8A 6298 + 5420 6290 48106 69 1 4 87 1 0 132 0 2 576 chain 20234 chr1 249250621 + 234518483 234518747 AluSz6 309 + 10 277 126432 15 0 5 103 3 1 143 chain 16466 chr1 249250621 + 234519078 234519283 L1PA4 6152 + 5936 6143 137021 15 0 3 55 4 3 131 chain 53538 chr1 249250621 + 234535189 234535792 L1PA3long 6157 + 5554 6157 56655 102 0 1 358 1 0 142 chain 5307 chr1 249250621 + 234542889 234542954 MER21A 919 + 11 76 191947 65 chain 25728 chr1 249250621 + 234554636 234554945 AluYf5 307 + 0 307 101181 260 10 8 39 chain 22558 chr1 249250621 + 234558132 234558633 L1MA3 4352 + 3882 4352 117770 172 138 106 7 0 7 28 1 3 47 9 7 6 0 1 16 1 0 6 1 0 26 1 0 14 1 0 4 7 4 16 chain 28093 chr1 249250621 + 234587211 234587512 AluYa5 310 + 0 299 92671 97 1 0 35 1 0 167 chain 7045 chr1 249250621 + 234621195 234621461 MER1B 344 + 0 344 177153 23 131 80 31 22 152 25 1 0 33 chain 40215 chr1 249250621 + 234628873 234629404 MER41A 554 + 0 554 69011 187 0 10 230 0 1 40 11 16 40 0 7 23 chain 4260 chr1 249250621 + 234641927 234641989 L1PB1 5432 + 5337 5395 203742 9 2 0 24 1 0 21 1 0 4 chain 12206 chr1 249250621 + 234643233 234643396 MER30 238 - 1 182 151395 108 4 22 51 chain 3881 chr1 249250621 + 234693405 234693452 MER21C 908 - 835 883 209160 35 0 1 12 chain 22396 chr1 249250621 + 234716720 234717084 THE1B 368 - 0 368 118504 49 8 9 7 1 0 60 5 4 9 1 0 16 27 34 4 0 1 6 2 0 169 chain 3641 chr1 249250621 + 234732185 234732230 L2a 937 - 610 655 212949 45 chain 10321 chr1 249250621 + 234777589 234777754 L1PA17 2846 + 2529 2691 159028 4 1 0 59 11 8 32 1 0 17 1 0 23 0 3 16 chain 36305 chr1 249250621 + 234800331 234800818 MER1A 529 + 37 529 74498 202 0 4 85 10 6 118 4 0 6 2 10 49 0 1 11 chain 15006 chr1 249250621 + 234824305 234824598 MER44A 345 - 46 317 141304 43 8 9 64 0 3 16 31 4 44 13 15 30 12 11 32 chain 24525 chr1 249250621 + 234831723 234832089 THE1D 372 - 1 372 107411 176 25 30 52 4 11 49 8 0 33 0 1 19 chain 23330 chr1 249250621 + 234844009 234844355 THE1B 368 - 0 356 114029 115 45 55 13 0 1 15 1 0 157 chain 37391 chr1 249250621 + 234897735 234898164 L1PA5 6144 - 1 437 72966 146 1 8 282 chain 31177 chr1 249250621 + 234939404 234939813 MSTA 426 + 0 409 82205 41 3 4 85 1 0 279 chain 6876 chr1 249250621 + 234973719 234973817 HY4 93 + 0 90 178385 70 8 0 20 chain 3692 chr1 249250621 + 235005902 235005984 MIR 256 - 79 162 212047 17 31 32 34 chain 25380 chr1 249250621 + 235024106 235024460 THE1B 368 + 0 368 102783 33 0 5 131 1 0 32 1 2 11 0 4 22 1 0 55 0 1 10 1 6 56 chain 4808 chr1 249250621 + 235033524 235033579 MER5A 189 - 132 187 197259 55 chain 4798 chr1 249250621 + 235040693 235040750 MER97a 834 - 187 244 197383 57 chain 3726 chr1 249250621 + 235060334 235060375 MER58A 224 + 46 87 211545 41 chain 33735 chr1 249250621 + 235078732 235079208 MER51E 476 + 0 476 78036 285 12 22 59 0 1 34 13 8 6 2 0 12 4 0 49 chain 3827 chr1 249250621 + 235107530 235107577 MADE1 96 - 0 48 209969 7 0 1 40 chain 7007 chr1 249250621 + 235121596 235121680 LTR54 533 + 0 84 177426 84 chain 26727 chr1 249250621 + 235121987 235122293 AluY 311 + 0 299 97233 13 7 0 286 chain 5870 chr1 249250621 + 235138957 235139026 MSTC 436 - 2 71 186473 69 chain 27341 chr1 249250621 + 235144502 235144845 THE1B 368 - 26 368 95142 171 1 0 171 chain 3892 chr1 249250621 + 235171074 235171114 AluSq10 312 + 137 177 208993 40 chain 27067 chr1 249250621 + 235255974 235256283 AluSp 311 + 2 311 96046 309 chain 12929 chr1 249250621 + 235271774 235271977 MER30 238 + 0 238 148507 15 14 32 45 6 25 73 2 0 48 chain 26562 chr1 249250621 + 235277747 235278051 AluYf5 307 - 3 307 97800 304 chain 22314 chr1 249250621 + 235289839 235290108 AluSg 306 + 2 274 118850 186 0 3 83 chain 18945 chr1 249250621 + 235291262 235291499 AluSx 319 + 54 293 130242 69 1 3 167 chain 148281 chr1 249250621 + 235303418 235305294 LTR12C 1709 + 0 1709 24849 209 0 2 76 9 0 550 161 0 273 1 0 7 3 1 106 0 4 481 chain 11882 chr1 249250621 + 235304263 235304423 LTR12C 1709 + 837 997 97209 160 chain 6792 chr1 249250621 + 235327217 235327357 AluSp 311 + 10 294 179006 35 46 191 6 1 0 52 chain 23721 chr1 249250621 + 235327755 235328060 AluSc8 310 + 4 309 111929 102 1 0 26 0 3 127 1 0 43 1 0 4 chain 11630 chr1 249250621 + 235340795 235340927 L1PA6 6164 - 2 134 153775 132 chain 151091 chr1 249250621 + 235471761 235473508 SVA_D 2077 + 0 2077 24464 20 1 7 743 40 0 126 14 156 8 0 1 5 1 2 108 0 225 357 4 0 310 1 0 9 chain 27849 chr1 249250621 + 235503775 235504073 AluY 311 + 6 305 93524 126 0 1 172 chain 29208 chr1 249250621 + 235512428 235512733 AluYa5 310 + 1 306 88008 305 chain 7053 chr1 249250621 + 235528000 235528100 LTR23 429 - 131 227 177080 19 1 0 35 4 1 41 chain 23852 chr1 249250621 + 235533564 235533854 AluSg7 307 - 5 296 111178 170 0 1 120 chain 28582 chr1 249250621 + 235544401 235545094 MER41-int 2638 - 347 720 90817 63 0 2 204 0 2 35 324 0 67 chain 544654 chr1 249250621 + 235545131 235551067 L1PA3long 6157 - 0 5959 2118 2212 0 1 684 0 1 278 1 0 915 0 1 307 0 18 859 0 2 137 0 1 543 chain 10372 chr1 249250621 + 235551081 235551232 MER41A 554 - 0 157 158823 12 8 9 52 7 12 72 chain 44966 chr1 249250621 + 235559683 235560266 L1MA3 4352 - 489 1081 63096 122 1 0 6 0 1 136 1 12 200 1 0 30 1 0 85 chain 5378 chr1 249250621 + 235568580 235568663 Tigger3b 1229 - 836 909 191223 65 10 0 8 chain 34391 chr1 249250621 + 235573574 235574014 MER41A 554 - 112 554 77075 13 1 2 282 1 0 52 8 10 83 chain 48304 chr1 249250621 + 235574025 235574707 MER41-int 2638 - 2 1074 60239 109 0 1 24 0 2 65 0 1 78 3 0 150 0 15 68 36 398 14 0 13 30 1 0 104 chain 12423 chr1 249250621 + 235574798 235574954 MER41B 635 - 0 154 150555 125 2 0 29 chain 4183 chr1 249250621 + 235615802 235615854 Tigger4a 237 + 0 52 204792 52 chain 32710 chr1 249250621 + 235626104 235626681 L1PB1 5432 + 4860 5423 79671 97 5 23 4 1 0 103 0 4 12 1 2 9 7 0 24 8 6 14 25 20 42 2 1 15 1 0 45 1 0 14 4 0 6 1 0 12 27 19 14 2 0 24 1 0 22 1 0 12 1 0 10 1 0 9 chain 6572 chr1 249250621 + 235628102 235628188 L1MB7 1623 + 1090 1175 180680 32 1 0 53 chain 22181 chr1 249250621 + 235639441 235639723 AluSc8 310 + 0 281 119438 48 5 1 83 0 3 146 chain 10425 chr1 249250621 + 235683182 235683322 THE1B 368 - 225 368 158584 101 0 5 21 3 1 15 chain 3188 chr1 249250621 + 235688926 235688962 Arthur1A 176 + 9 45 221181 36 chain 4399 chr1 249250621 + 235690799 235690869 MER63B 433 + 311 380 201946 20 10 9 40 chain 3833 chr1 249250621 + 235690919 235690965 MIR 256 + 112 158 209876 46 chain 14354 chr1 249250621 + 235697116 235697312 Tigger2a 444 + 1 195 143366 72 5 6 62 3 0 54 chain 42712 chr1 249250621 + 235709543 235710087 MER41A 554 - 14 554 65759 82 9 5 224 2 0 205 0 2 22 chain 25175 chr1 249250621 + 235719576 235719878 AluSc5 308 + 0 301 103880 21 2 1 279 chain 9074 chr1 249250621 + 235735088 235736165 Tigger3a 397 - 134 374 165197 30 297 9 64 1 3 7 0 2 10 621 68 47 chain 39680 chr1 249250621 + 235736315 235736785 L1PA5 6144 + 5672 6144 69786 262 4 7 122 2 1 80 chain 23394 chr1 249250621 + 235755202 235755523 LTR39 781 + 43 359 113678 52 14 10 93 1 0 161 chain 98300 chr1 249250621 + 235756818 235758246 LTR12C 1709 - 0 1709 37219 76 9 2 4 1 0 243 7 9 147 42 11 99 8 165 65 10 1 33 0 118 121 11 12 129 8 10 64 19 62 42 4 5 10 0 4 16 6 7 254 chain 6499 chr1 249250621 + 235773853 235773934 L1MC4 1079 - 807 888 181245 81 chain 3221 chr1 249250621 + 235778618 235778659 MLT1D 503 + 296 337 220556 41 chain 43073 chr1 249250621 + 235801801 235802329 L1PA8 5853 - 0 521 65329 93 1 0 18 5 4 50 2 1 7 1 0 72 3 1 45 1 0 230 chain 8073 chr1 249250621 + 235830859 235830964 MER2 342 - 23 129 170627 20 3 4 82 chain 9437 chr1 249250621 + 235839584 235839757 LTR54B 464 + 0 190 163374 86 19 16 17 14 34 37 chain 52372 chr1 249250621 + 235862407 235863149 L1PA8 5853 - 0 768 57380 9 0 1 83 1 0 13 42 63 5 3 0 7 0 2 60 3 1 45 1 0 76 0 9 283 5 6 4 1 0 101 chain 47743 chr1 249250621 + 235863149 235863742 L1PA8 5853 + 4456 5054 60663 255 0 2 141 0 5 151 10 8 36 chain 18481 chr1 249250621 + 235925220 235925434 L1PA4 6152 + 5938 6152 131551 214 chain 16156 chr1 249250621 + 235946726 235946946 L1PA8 5853 + 5637 5853 137877 45 1 0 8 1 0 5 2 1 44 2 1 19 1 0 83 0 1 9 chain 66261 chr1 249250621 + 235949617 235950360 L1PA5 6144 + 5402 6140 49970 611 0 1 115 6 0 11 chain 24412 chr1 249250621 + 235978849 235979150 L1PA15 4387 + 2785 3086 108022 301 chain 414901 chr1 249250621 + 236009391 236014846 L1PB1 5432 + 19 5424 9672 33 0 10 9 17 8 529 2 0 332 0 1 454 1 0 7 2 0 5 26 13 174 1 7 52 0 5 185 0 4 42 1 6 88 0 1 392 0 8 104 4 0 301 0 9 34 2 0 54 0 3 124 1 0 252 0 1 425 2 1 44 7 1 228 0 1 344 1 0 229 2 1 77 4 5 392 1 5 84 31 0 14 13 10 7 1 0 13 16 11 11 3 1 50 2 1 16 1 0 33 0 1 10 1 0 6 33 21 6 1 0 13 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 3690 chr1 249250621 + 236026267 236026308 LTR54 533 + 492 533 212079 41 chain 5082 chr1 249250621 + 236026691 236026750 U5 65 - 6 65 194263 59 chain 28221 chr1 249250621 + 236047421 236047720 AluYa5 310 - 11 309 92229 173 1 0 125 chain 30132 chr1 249250621 + 236054597 236054913 AluYb8 318 - 2 318 84375 316 chain 24165 chr1 249250621 + 236061925 236062272 LTR24C 604 + 0 476 109404 77 16 30 191 0 1 13 1 115 49 chain 46932 chr1 249250621 + 236067036 236067653 L1PA8 5853 + 5244 5853 61281 320 1 0 46 3 1 67 2 1 9 21 19 33 2 1 19 1 0 93 chain 8951 chr1 249250621 + 236078714 236078821 U6 107 + 0 107 165866 107 chain 39696 chr1 249250621 + 236078827 236079298 L1PA7 6471 + 5985 6461 69761 201 1 0 127 1 7 141 chain 162924 chr1 249250621 + 236089598 236092255 L1PB3 3668 - 48 2345 22948 6 1 0 14 8 5 13 1 0 15 5 1 32 18 16 14 5 3 19 23 7 72 14 13 99 350 0 188 6 11 89 3 0 16 2 0 317 0 3 89 0 3 57 2 0 5 6 19 376 1 2 9 33 25 31 0 1 34 1 0 17 0 2 353 13 22 133 1 0 166 chain 3435 chr1 249250621 + 236125617 236125658 Tigger4b 360 - 0 41 216495 41 chain 400692 chr1 249250621 + 236125827 236131930 L1PB1 5432 + 77 5420 10067 468 2 0 102 1 2 113 7 6 480 0 1 139 47 30 49 9 10 67 1 5 4 1 0 33 7 0 14 1 6 22 305 0 7 2 1 266 0 3 115 3 4 40 7 9 418 2 0 5 5 14 6 7 0 326 2 0 59 4 0 292 5 4 68 0 1 393 0 1 31 11 9 28 4 6 272 0 1 56 11 16 412 0 1 120 1 0 14 3 0 32 0 3 151 314 3 169 0 3 105 130 22 24 1 0 8 1 0 12 4 0 9 2 0 53 22 20 59 2 0 12 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5274 chr1 249250621 + 236135662 236135755 MER57B1 401 + 0 105 192284 26 4 8 34 5 13 24 chain 28107 chr1 249250621 + 236163556 236163932 MER4B 649 + 205 572 92620 162 0 4 49 21 8 144 chain 8510 chr1 249250621 + 236173932 236174069 MER58A 224 - 67 216 168247 54 9 17 45 2 6 27 chain 61578 chr1 249250621 + 236198292 236198946 L1PA2 6032 - 0 654 52080 654 chain 41790 chr1 249250621 + 236222993 236223844 MER41A 554 - 2 554 66913 79 0 5 40 314 8 230 1 2 168 1 2 18 chain 15538 chr1 249250621 + 236234597 236234961 L1MB3 1562 - 10 326 139775 28 27 6 50 1 0 30 2 0 5 106 82 115 chain 8008 chr1 249250621 + 236239725 236239845 Tigger1a_Art 216 - 0 119 171005 65 11 10 44 chain 28204 chr1 249250621 + 236260091 236260427 LTR10A 586 - 22 359 92296 50 0 1 286 chain 20322 chr1 249250621 + 236278755 236279048 AluSp 311 + 0 295 126173 17 0 17 14 20 9 75 1 0 151 3 0 12 chain 26040 chr1 249250621 + 236299849 236300160 AluY 311 + 0 306 99857 118 5 0 188 chain 24647 chr1 249250621 + 236300173 236300463 AluSx1 309 + 13 301 106739 120 2 0 168 chain 4267 chr1 249250621 + 236302664 236302736 MADE1 96 + 9 96 203658 40 9 24 23 chain 27746 chr1 249250621 + 236324855 236325214 THE1A 353 + 0 353 93883 109 2 1 88 4 0 80 1 0 75 chain 127379 chr1 249250621 + 236325214 236326773 THE1A-int 1579 + 0 1579 28725 15 0 2 36 0 1 41 0 1 294 1 2 238 15 30 919 chain 27851 chr1 249250621 + 236326773 236327130 THE1A 353 + 0 353 93518 81 0 3 6 3 0 21 1 0 91 3 0 151 chain 524087 chr1 249250621 + 236349658 236356092 L1PA7 6471 - 20 6464 4758 443 12 0 293 27 38 60 0 3 8 0 4 188 1 2 199 0 1 539 0 8 151 0 1 193 0 3 313 1 0 244 0 1 230 1 0 32 2 0 57 0 5 170 0 1 90 0 1 73 0 4 171 1 0 217 2 1 68 16 0 644 15 0 8 9 15 268 0 2 418 12 31 351 4 0 8 0 4 143 0 5 168 3 0 52 2 1 5 0 1 103 3 0 9 12 0 159 4 5 232 chain 96761 chr1 249250621 + 236366066 236367869 L1MA1 4479 - 514 2090 37631 13 3 0 6 2 1 99 2 0 20 1 0 48 0 6 17 1 0 9 1 2 5 2 0 25 1 0 35 320 0 79 1 0 20 7 11 50 2 0 130 3 0 27 3 6 53 0 10 30 4 1 11 1 0 39 2 19 47 0 43 33 0 8 66 0 11 26 1 0 7 0 1 4 1 0 67 12 14 62 1 0 29 27 28 79 1 0 66 0 8 9 0 4 30 4 5 35 7 5 117 chain 10700 chr1 249250621 + 236431083 236431237 U2 167 + 0 159 157416 40 0 11 79 2 0 8 8 4 17 chain 7867 chr1 249250621 + 236451068 236451162 MER107 203 + 66 160 171895 94 chain 22761 chr1 249250621 + 236459447 236459735 AluSp 311 - 7 297 116775 172 2 0 74 1 5 39 chain 3361 chr1 249250621 + 236464278 236464349 U13_ 108 + 0 71 217851 32 1 0 5 16 17 17 chain 18437 chr1 249250621 + 236475814 236476054 MER2 342 + 89 329 131678 27 1 0 58 0 1 154 chain 44386 chr1 249250621 + 236477509 236478044 MER41A 554 + 0 535 63706 42 0 1 354 1 0 138 chain 49361 chr1 249250621 + 236478912 236479637 LTR8 732 + 0 717 59479 145 1 0 230 3 1 95 34 35 11 5 1 12 1 0 4 3 4 111 2 0 18 0 1 31 1 0 18 chain 43704 chr1 249250621 + 236485325 236485958 LTR66 600 - 21 600 64561 92 1 17 56 85 14 179 2 3 218 chain 24668 chr1 249250621 + 236510074 236510382 AluSp 311 - 1 311 106622 28 4 6 276 chain 47051 chr1 249250621 + 236512627 236513703 MER4E 760 - 8 760 61164 42 15 2 20 7 32 121 14 0 6 2 0 58 0 7 18 1 0 80 1 3 90 338 4 22 0 1 23 3 0 20 49 52 89 0 10 29 5 0 23 chain 23150 chr1 249250621 + 236514737 236515027 AluSc 308 + 0 298 114892 53 7 15 230 chain 3061 chr1 249250621 + 236519227 236519260 MER4E1 777 + 663 696 223803 33 chain 5601 chr1 249250621 + 236520454 236520522 Charlie1a 1436 + 320 388 189077 68 chain 47745 chr1 249250621 + 236521709 236522334 L1P3 4156 - 709 1353 60660 73 14 33 538 chain 5315 chr1 249250621 + 236534348 236534409 LTR47A 437 + 357 418 191874 61 chain 4812 chr1 249250621 + 236544658 236544709 L1PA5 6144 - 14 65 197207 51 chain 166246 chr1 249250621 + 236549251 236551319 SVA_F 1814 + 10 1814 22493 893 274 0 44 0 15 39 1 0 4 1 0 172 1 0 10 1 0 284 1 0 343 chain 14552 chr1 249250621 + 236550177 236550394 SVA_F 1814 + 937 1168 93588 10 1 15 206 chain 9549 chr1 249250621 + 236553358 236553573 L1PB1 5432 + 5200 5395 162834 20 2 1 15 5 4 41 1 0 15 3 1 14 8 0 11 29 24 24 1 0 21 1 0 4 chain 5087 chr1 249250621 + 236575232 236575292 MLT1C 463 - 373 433 194210 60 chain 99114 chr1 249250621 + 236591281 236592518 SVA_B 1603 - 10 1603 36995 442 1 0 4 0 1 119 12 373 54 0 1 78 0 39 286 1 0 155 36 2 10 5 7 10 12 0 12 chain 4460 chr1 249250621 + 236594626 236594707 FLAM_A 137 + 26 108 201237 42 22 23 17 chain 15102 chr1 249250621 + 236642184 236642449 L1PB1 5432 + 5172 5416 141022 48 2 1 16 1 0 43 1 0 16 26 15 10 0 1 5 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 23584 chr1 249250621 + 236648539 236648820 AluY 311 + 16 298 112666 114 1 2 166 chain 88668 chr1 249250621 + 236667797 236668826 LTR5A 1029 + 0 1029 40124 147 1 0 724 2 3 155 chain 45409 chr1 249250621 + 236672016 236672602 L1P3 4156 - 890 1476 62584 50 3 0 120 1 5 108 1 0 303 chain 8075 chr1 249250621 + 236796971 236797073 MLT1A 405 - 277 379 170614 102 chain 5088 chr1 249250621 + 236821773 236821836 MLT1A 405 + 294 357 194198 63 chain 3812 chr1 249250621 + 236833360 236833425 MER5A1 166 - 2 68 210208 26 12 13 27 chain 19277 chr1 249250621 + 236873926 236874265 MER1B 344 + 30 344 129296 56 44 17 73 21 23 68 7 8 54 1 0 15 chain 28566 chr1 249250621 + 236939964 236940267 AluYa5 310 - 7 310 90892 303 chain 24281 chr1 249250621 + 236954158 236954452 AluSc5 308 + 0 291 108768 64 2 0 94 2 0 120 0 1 12 chain 23056 chr1 249250621 + 236954600 236955018 MER4E 760 + 389 760 115374 18 1 0 3 1 0 20 13 17 63 61 41 22 29 0 187 chain 5727 chr1 249250621 + 236957279 236957356 L1PB1 5432 - 10 86 187870 18 1 0 12 1 0 22 0 1 23 chain 27517 chr1 249250621 + 237005193 237005489 AluYf4 310 - 13 309 94609 296 chain 59997 chr1 249250621 + 237019845 237020567 L1PA7 6471 - 13 740 52826 84 0 1 53 6 5 309 0 2 56 1 0 156 0 4 57 chain 11352 chr1 249250621 + 237041816 237042007 MER30 238 - 0 237 154890 45 8 11 41 8 33 68 8 26 13 chain 29104 chr1 249250621 + 237082601 237083039 MLT2A1 477 + 0 477 88533 135 0 5 29 4 1 11 0 1 22 1 0 118 12 13 34 9 6 10 5 0 7 8 48 27 0 4 6 chain 5293 chr1 249250621 + 237085092 237085160 L1MB1 2102 + 1939 2007 192084 68 chain 16712 chr1 249250621 + 237090729 237090963 Tigger2 2703 - 142 377 136368 9 0 5 62 0 1 31 0 4 74 9 0 49 chain 31554 chr1 249250621 + 237095616 237096045 LTR7B 505 - 2 505 81556 49 14 13 54 0 1 24 1 0 43 0 1 38 0 2 26 6 68 69 0 10 105 chain 283239 chr1 249250621 + 237097258 237100791 HERVH-int 3825 - 0 3825 14452 225 5 7 264 140 353 437 3 0 189 0 4 48 0 1 272 0 10 299 4 31 624 0 5 275 0 3 13 0 2 6 0 1 59 1 93 24 2 1 9 1 0 39 67 1 55 3 4 236 0 2 233 chain 31069 chr1 249250621 + 237100793 237101222 LTR7B 505 - 2 505 82400 49 14 13 54 0 1 24 1 0 43 0 1 38 0 2 26 6 68 69 0 10 105 chain 2874 chr1 249250621 + 237146732 237146762 LTR16A 446 + 314 344 227465 30 chain 567781 chr1 249250621 + 237182767 237188794 L1HS 6032 - 3 6029 39 4044 1 0 1982 chain 565912 chr1 249250621 + 237238564 237244593 L1HS 6032 + 2 6032 162 1118 0 1 4911 chain 21548 chr1 249250621 + 237253183 237253547 THE1C 375 - 0 375 121973 58 0 1 74 4 17 19 75 72 134 chain 8008 chr1 249250621 + 237253559 237253657 MLT1D 503 + 29 135 171000 91 0 8 7 chain 22135 chr1 249250621 + 237270578 237270836 AluY 311 + 39 299 119646 93 0 1 74 1 2 90 chain 26413 chr1 249250621 + 237286950 237287228 AluYb8 318 - 2 280 98362 278 chain 141819 chr1 249250621 + 237290081 237291673 SVA_F 1814 - 0 1814 25856 22 0 1 632 5 4 41 0 78 24 0 64 88 0 80 780 chain 25146 chr1 249250621 + 237297594 237297946 THE1B 368 - 0 368 104026 124 1 0 6 10 24 12 0 1 29 1 0 104 5 8 60 chain 19087 chr1 249250621 + 237308305 237308530 L1PA7 6471 + 6247 6470 129854 68 1 0 5 1 0 150 chain 18802 chr1 249250621 + 237311548 237311819 L1PA8 5853 + 5587 5853 130671 22 2 0 69 2 1 12 3 0 8 6 9 32 2 1 19 1 0 93 chain 19550 chr1 249250621 + 237334313 237334547 AluY 311 + 61 296 128516 71 0 1 163 chain 27047 chr1 249250621 + 237391289 237391781 L1PB1 5432 - 5 461 96118 5 2 0 18 1 0 13 1 0 18 1 0 27 9 7 8 1 0 4 2 0 19 16 6 6 3 0 16 1 0 44 5 4 11 2 1 52 2 0 9 2 0 3 2 0 10 1 0 13 1 0 19 1 0 9 3 2 132 chain 5543 chr1 249250621 + 237437565 237437630 Tigger3c 601 + 39 104 189636 65 chain 17952 chr1 249250621 + 237437650 237438213 Tigger3 1187 + 492 1058 132979 12 12 14 19 1 0 37 104 110 64 4 2 40 14 18 46 0 1 30 143 136 37 chain 14394 chr1 249250621 + 237447134 237447399 L1PB1 5432 - 19 265 143222 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 3 0 13 1 4 42 1 0 16 2 1 53 chain 280865 chr1 249250621 + 237448785 237452614 L1PBa1 4058 - 18 4048 14590 42 1 0 17 1 0 9 1 0 5 1 0 5 12 9 12 6 5 13 3 0 4 1 0 4 2 1 19 2 0 12 8 0 17 1 0 15 3 1 109 2 0 40 1 0 19 11 10 6 1 0 96 0 4 14 6 5 40 0 1 71 1 0 350 18 28 69 5 212 171 0 4 132 13 8 235 0 12 224 0 1 54 0 1 267 1 0 534 31 30 215 0 1 229 3 2 28 14 13 187 2 0 9 5 14 83 1 0 266 1 0 4 0 1 4 4 1 10 2 1 25 chain 27811 chr1 249250621 + 237452641 237453015 THE1C 375 - 0 375 93659 26 1 0 9 0 4 150 1 2 59 3 0 125 chain 106468 chr1 249250621 + 237471782 237473467 LTR12C 1709 - 0 1709 35130 84 1 0 66 5 106 225 51 20 51 1 48 17 15 0 7 2 17 231 1 0 183 120 1 64 1 2 97 5 6 10 8 10 222 4 19 135 50 59 29 chain 8906 chr1 249250621 + 237473601 237474048 MER4C 627 + 0 627 166107 18 49 50 13 1 0 35 144 326 14 11 12 22 78 75 62 chain 23153 chr1 249250621 + 237488726 237489015 AluY 311 + 20 310 114879 111 1 2 177 chain 6089 chr1 249250621 + 237508483 237508558 L1MC 810 - 268 343 184492 75 chain 19418 chr1 249250621 + 237522385 237522633 MER47A 366 - 49 297 128899 248 chain 34457 chr1 249250621 + 237534966 237535364 L1PA5 6144 + 5753 6144 76983 311 7 0 80 chain 18674 chr1 249250621 + 237541283 237541598 THE1B 368 - 0 368 131019 86 41 81 5 3 0 28 1 0 44 0 3 10 4 3 49 0 15 44 chain 25176 chr1 249250621 + 237545683 237545970 L1PA5 6144 - 5 292 103868 287 chain 38466 chr1 249250621 + 237562775 237563279 LTR10G 522 - 0 502 71494 73 4 1 95 0 1 117 4 5 192 1 0 18 chain 3863 chr1 249250621 + 237571582 237571628 L1MC2 1988 - 1370 1416 209397 46 chain 4906 chr1 249250621 + 237606955 237607082 MER58B 340 - 165 276 196222 29 55 39 43 chain 5012 chr1 249250621 + 237608432 237608488 FLAM_A 137 + 66 122 195003 56 chain 24051 chr1 249250621 + 237651819 237652201 LTR7B 505 + 0 505 110035 20 14 18 67 0 10 56 12 81 37 2 1 21 0 41 89 14 13 20 0 1 30 chain 32326 chr1 249250621 + 237667475 237667895 LTR7B 505 - 9 505 80311 52 0 1 56 0 1 24 1 0 43 0 1 38 0 2 26 6 68 69 0 10 105 chain 13315 chr1 249250621 + 237680696 237680877 MER30 238 - 0 201 147032 45 0 3 56 10 27 70 chain 13758 chr1 249250621 + 237685284 237685452 L1PA4 6152 - 9 179 145409 46 0 4 114 2 0 6 chain 36692 chr1 249250621 + 237704876 237705325 LTR7 482 - 0 482 73965 48 13 15 122 0 31 266 chain 365749 chr1 249250621 + 237766770 237770885 L1PA5 6144 + 2022 6144 11216 193 0 2 92 0 4 693 0 1 1067 6 12 1129 8 0 159 0 2 38 0 1 584 1 0 145 chain 11723 chr1 249250621 + 237785641 237785825 Tigger4b 360 + 42 249 153373 59 23 46 102 chain 34743 chr1 249250621 + 237791523 237791902 L1PA3long 6157 - 1 380 76556 379 chain 41212 chr1 249250621 + 237816875 237817404 MLT2A2 560 - 11 559 67637 136 3 14 179 15 24 13 1 0 182 chain 27290 chr1 249250621 + 237824496 237824801 L1PA7 6471 + 6160 6465 95303 305 chain 131715 chr1 249250621 + 237832177 237833638 SVA_D 2077 - 0 2076 27695 639 1 0 20 0 575 79 0 40 663 0 8 24 7 0 28 chain 44350 chr1 249250621 + 237891687 237892247 L1PA8 5853 + 5298 5851 63759 223 1 0 41 1 0 38 10 8 70 2 1 14 1 0 6 0 1 39 3 2 19 1 0 91 chain 517291 chr1 249250621 + 237983525 237989950 L1PA7 6471 + 0 6466 5451 196 9 8 195 4 6 214 6 7 152 2 0 89 0 6 6 6 0 330 4 8 634 0 1 185 4 0 598 7 0 69 0 4 135 0 1 58 0 2 196 1 3 287 1 0 4 0 1 108 1 0 82 0 2 248 0 1 68 0 1 380 1 0 236 0 6 149 0 4 42 0 5 647 1 0 174 5 4 64 1 0 92 4 7 367 25 26 29 1 0 133 7 17 22 0 14 5 2 1 53 2 0 84 chain 41536 chr1 249250621 + 238006995 238007964 L1PA14 3548 + 2748 3440 67240 190 21 15 30 256 4 14 2 0 4 2 0 14 4 3 15 0 2 13 2 0 59 14 10 10 2 0 5 2 1 84 1 0 11 7 11 87 1 0 13 6 2 32 5 3 13 1 0 3 1 0 21 1 0 23 chain 6040 chr1 249250621 + 238011131 238011320 MER21B 843 - 17 206 184895 13 7 5 6 1 0 37 18 16 20 59 64 28 chain 5965 chr1 249250621 + 238020248 238020329 Tigger3b 1229 - 663 745 185564 5 0 1 76 chain 8681 chr1 249250621 + 238031448 238031545 L1PA7 6471 - 487 584 167297 97 chain 38118 chr1 249250621 + 238031545 238032013 L1PA7 6471 + 5998 6468 71959 315 5 6 90 0 1 58 chain 41361 chr1 249250621 + 238055723 238056246 MER9a3 513 - 0 513 67457 51 0 1 16 5 1 184 5 4 54 0 3 106 9 0 93 chain 90261 chr1 249250621 + 238078578 238079582 LTR13 1007 + 4 1007 39554 300 1 0 703 chain 89978 chr1 249250621 + 238082291 238083299 LTR13 1007 - 0 1007 39657 703 2 1 303 chain 40358 chr1 249250621 + 238087263 238087806 MLT2A2 560 - 0 560 68793 25 10 19 100 6 17 219 12 11 29 2 0 140 chain 3415 chr1 249250621 + 238103342 238103398 MER33 330 - 273 330 216853 29 6 7 21 chain 6042 chr1 249250621 + 238105861 238105933 tRNA-Gln-CAA_ 72 + 0 72 184879 72 chain 15615 chr1 249250621 + 238128238 238128458 LTR39 781 - 561 781 139534 135 0 1 38 23 22 24 chain 22155 chr1 249250621 + 238151985 238152245 L1PA5 6144 + 5883 6142 119572 243 1 0 16 chain 9220 chr1 249250621 + 238160684 238160810 MER85 139 + 0 137 164450 96 0 6 6 3 8 21 chain 8381 chr1 249250621 + 238165442 238165539 L1PA7 6471 + 4399 4496 168956 97 chain 76126 chr1 249250621 + 238165540 238166449 L1PA7 6471 + 4496 5399 45407 111 2 0 137 5 0 274 0 1 61 1 0 138 0 1 180 chain 86887 chr1 249250621 + 238166457 238167481 L1PA7 6471 + 5421 6452 40831 193 0 2 240 0 4 446 10 11 135 chain 22657 chr1 249250621 + 238182869 238183167 AluSp 311 + 8 298 117289 112 7 0 156 3 2 20 chain 56991 chr1 249250621 + 238198348 238200259 L1PB1 5432 + 84 1988 12453 19 14 16 71 1 0 437 24 28 734 42 29 196 0 1 373 chain 556989 chr1 249250621 + 238200414 238206565 L1PA3long 6157 - 0 6152 610 154 4 5 676 1 2 2239 0 1 4 1 0 386 1 0 934 0 1 1671 1 0 79 chain 78672 chr1 249250621 + 238206565 238209203 L1PB1 5432 + 2808 5404 12453 34 11 1 45 1 4 512 0 1 331 13 1 211 6 7 7 0 1 83 0 1 257 0 1 180 12 13 119 4 5 296 0 1 111 7 0 7 0 1 4 5 11 49 16 14 22 1 0 5 20 15 9 2 0 52 1 0 12 7 6 44 1 0 15 1 0 5 20 10 16 8 5 12 2 0 26 1 0 21 1 0 13 chain 132749 chr1 249250621 + 238209461 238211143 L1PA8 5853 - 3 1688 27470 90 1 0 19 2 1 45 18 17 70 2 0 46 1 0 433 6 16 27 0 2 30 0 1 44 2 0 10 2 1 231 0 1 132 0 1 158 3 0 6 1 0 4 0 1 299 chain 38288 chr1 249250621 + 238245001 238246601 L1MA1 4479 - 289 3988 71726 18 7 0 9 3 1 11 1 0 9 1 0 26 0 1 7 2 0 30 1 0 65 4 14 29 47 43 68 1 0 6 0 1 4 847 2952 68 22 31 7 8 0 299 chain 10249 chr1 249250621 + 238246068 238246194 THE1D 372 + 246 372 159377 126 chain 3715 chr1 249250621 + 238281237 238281281 MIR 256 - 134 178 211700 44 chain 14039 chr1 249250621 + 238281738 238281944 L1PA8 5853 - 10 208 144423 83 1 0 19 2 1 52 1 0 5 10 5 33 chain 23472 chr1 249250621 + 238293828 238294194 THE1D 372 + 0 372 113267 188 50 58 87 8 6 33 chain 8460 chr1 249250621 + 238333603 238333711 L1MB8 1703 - 111 219 168511 108 chain 15164 chr1 249250621 + 238361629 238361800 L1PA4 6152 - 11 182 140872 171 chain 19786 chr1 249250621 + 238370108 238370397 L1PA8 5853 + 5586 5853 127856 23 2 0 70 1 0 9 1 0 55 1 0 20 1 0 11 24 8 71 chain 92626 chr1 249250621 + 238371209 238372211 L1PA3long 6157 - 1043 2046 38707 970 0 1 32 chain 94582 chr1 249250621 + 238372211 238373252 L1PA3long 6157 + 5113 6153 38189 169 1 0 871 chain 18373 chr1 249250621 + 238375725 238376006 MER1B 344 + 60 344 131870 207 49 52 25 chain 13401 chr1 249250621 + 238402906 238403149 Tigger3a 397 + 27 326 146714 21 61 113 147 1 5 13 chain 2906 chr1 249250621 + 238424348 238424384 MLT1A1 405 + 369 405 226955 36 chain 39522 chr1 249250621 + 238439423 238439972 LTR7B 505 - 7 505 69995 207 0 1 33 2 1 7 0 22 23 73 0 204 chain 26641 chr1 249250621 + 238481368 238481736 THE1C 375 + 0 372 97505 64 11 12 171 5 9 94 1 0 22 chain 70633 chr1 249250621 + 238489785 238490686 SVA_A 1864 - 0 1564 48093 451 16 0 86 38 526 38 1 0 110 0 192 161 chain 5256 chr1 249250621 + 238494327 238494410 MER58A 224 + 47 117 192451 16 0 1 29 14 0 24 chain 50835 chr1 249250621 + 238517781 238518637 LTR12 884 + 0 884 58409 163 1 150 27 4 5 32 2 0 34 6 5 28 5 1 10 5 9 101 126 0 179 4 12 45 1 0 83 chain 925 chr1 249250621 + 238518227 238518265 LTR12 884 + 570 608 205040 38 chain 17091 chr1 249250621 + 238518784 238519026 Tigger2 2703 + 2272 2523 135348 171 0 7 10 17 19 44 chain 40731 chr1 249250621 + 238542738 238543188 LTR7 482 - 0 482 68270 185 0 31 40 0 1 225 chain 39799 chr1 249250621 + 238563216 238563751 MLT2A2 560 - 0 560 69628 69 0 1 77 0 11 54 0 9 21 1 0 32 1 4 84 2 5 180 1 0 13 chain 2630 chr1 249250621 + 238578234 238578280 L1MC1 2226 + 2083 2126 231268 20 3 1 18 1 0 4 chain 302949 chr1 249250621 + 238590038 238594078 L1PB1 5432 - 9 4012 13282 19 1 0 13 1 0 21 1 0 24 2 0 14 12 8 13 19 10 5 1 0 16 1 0 43 2 1 15 2 1 53 27 20 9 1 0 22 3 0 10 1 2 483 3 0 87 3 6 264 0 1 233 0 3 27 11 8 260 5 1 118 0 2 8 0 1 4 1 0 14 0 1 4 1 0 91 0 1 89 1 0 132 0 1 143 7 0 345 1 0 344 5 1 162 0 3 168 0 1 248 5 9 14 1 0 201 9 8 4 0 1 193 chain 3095 chr1 249250621 + 238595149 238595184 L1PBb 2709 - 874 909 223015 35 chain 9992 chr1 249250621 + 238626028 238626185 MER44B 551 - 400 551 160619 128 17 11 12 chain 6126 chr1 249250621 + 238633013 238633089 THE1B 368 + 232 306 184223 55 3 1 18 chain 263114 chr1 249250621 + 238644784 238648376 MER61-int 3695 - 0 3665 15534 49 9 3 64 7 18 198 11 9 202 2 1 80 0 2 205 2 1 190 0 16 16 0 32 292 6 0 76 1 0 55 0 3 24 0 4 19 1 0 4 6 5 66 0 13 83 5 6 12 0 2 128 1 11 182 0 5 80 11 13 94 1 0 37 0 2 262 0 8 194 11 10 206 13 15 5 1 0 50 3 1 95 7 6 129 15 1 139 13 12 85 2 1 66 0 1 31 0 1 29 1 0 16 chain 5787 chr1 249250621 + 238665758 238665822 L1PA3long 6157 - 292 356 187310 64 chain 25527 chr1 249250621 + 238665822 238666108 L1PA3long 6157 + 5869 6156 102110 133 0 1 153 chain 124149 chr1 249250621 + 238708713 238710562 THE1A-int 1579 - 8 1579 29649 1075 303 23 31 10 9 319 1 4 110 chain 37742 chr1 249250621 + 238710914 238711677 L1PB1 5432 - 10 753 72495 18 16 14 20 1 0 21 27 23 17 6 0 12 4 1 16 4 3 41 40 38 18 14 12 10 4 0 14 1 0 5 1 0 25 9 0 11 1 21 13 0 1 6 2 1 96 0 1 22 11 6 121 0 8 12 8 0 116 chain 26314 chr1 249250621 + 238787072 238787375 L1PA7 6471 + 6173 6470 98769 289 6 0 8 chain 67109 chr1 249250621 + 238798302 238799054 L1PA5 6144 - 1 759 49613 605 1 7 146 chain 24437 chr1 249250621 + 238820792 238821085 AluY 311 + 0 301 107872 67 0 8 226 chain 19945 chr1 249250621 + 238846654 238846912 L1PREC2 3366 + 1768 2025 127318 217 1 0 40 chain 130065 chr1 249250621 + 238846912 238848495 LTR12C 1709 - 0 1709 28074 80 4 0 256 0 6 139 0 4 106 3 1 6 1 0 123 0 1 73 5 7 53 0 118 209 1 2 84 12 13 428 chain 21981 chr1 249250621 + 238852372 238852608 L1HS 6032 - 0 236 120307 236 chain 59859 chr1 249250621 + 238852621 238853256 L1HS 6032 + 5141 5776 52892 635 chain 31759 chr1 249250621 + 238861823 238862278 L1PA8 5853 - 0 449 81233 92 31 29 53 2 1 70 2 0 46 1 0 158 chain 24866 chr1 249250621 + 238892473 238892774 L1PA6 6164 + 5860 6161 105539 301 chain 12847 chr1 249250621 + 238903150 238903419 Tigger3b 1229 - 464 745 148860 83 8 16 11 39 45 13 9 10 11 1 0 8 2 0 84 chain 5743 chr1 249250621 + 238921945 238922211 MER70B 575 - 305 575 187710 22 137 141 49 36 36 22 chain 73032 chr1 249250621 + 238925594 238926588 LTR5B 1012 - 0 1012 47010 81 0 6 341 0 1 94 1 0 100 24 23 26 10 9 189 1 14 38 6 7 83 chain 22083 chr1 249250621 + 238956348 238956619 AluSc8 310 + 10 284 119877 122 0 3 149 chain 54489 chr1 249250621 + 238960867 238961563 L1PA7 6471 - 2 645 56034 103 60 7 533 chain 22296 chr1 249250621 + 238998250 238998514 AluY 311 + 21 286 118924 109 1 2 154 chain 7673 chr1 249250621 + 239005859 239005951 L1PA10 4194 - 3517 3609 172077 92 chain 27465 chr1 249250621 + 239005951 239006319 L1PA10 4194 - 2308 2665 94759 50 0 4 65 15 0 238 chain 39377 chr1 249250621 + 239013685 239015166 L1PA8A 6298 + 4027 5518 22862 53 0 6 107 0 2 154 7 8 142 5 0 326 8 4 278 0 13 41 2 0 252 2 1 4 0 1 68 1 0 31 chain 181393 chr1 249250621 + 239015166 239017428 L1PA7 6471 - 1683 3930 20858 13 0 1 771 0 1 395 0 1 50 4 9 18 0 2 24 0 1 16 6 3 138 0 2 356 24 0 340 8 7 99 chain 133394 chr1 249250621 + 239017436 239019060 L1PA7 6471 + 4843 6469 27343 749 1 2 23 5 4 377 2 4 467 chain 20393 chr1 249250621 + 239019071 239019838 L1PA8A 6298 + 5520 6289 22862 22 0 1 427 2 0 5 7 9 194 0 16 6 20 5 84 chain 65042 chr1 249250621 + 239040581 239041741 L1PB1 5432 - 14 942 50554 14 1 0 12 1 0 22 1 0 22 7 5 12 1 0 4 3 1 18 28 16 11 1 0 45 1 0 15 2 1 12 1 0 35 7 5 9 2 0 3 2 0 10 10 8 21 200 2 12 2 0 613 chain 63099 chr1 249250621 + 239041741 239042625 L1PB1 5432 + 3572 4483 51402 69 0 1 86 6 9 38 0 1 36 0 9 130 0 16 200 0 4 27 37 12 6 0 4 107 1 14 104 1 2 36 chain 38891 chr1 249250621 + 239044263 239044769 L1PA8 5853 + 5352 5853 70881 171 0 1 38 1 0 46 2 0 18 1 2 51 1 0 11 1 0 54 2 1 15 1 0 93 chain 7234 chr1 249250621 + 239049500 239049604 MER50 708 - 41 146 175869 58 6 7 40 chain 283120 chr1 249250621 + 239064543 239068067 L1PA3long 6157 + 2114 6157 14460 92 0 2 72 1 2 5 1 0 39 24 5 320 6 0 87 0 1 306 22 22 104 1 0 328 15 16 173 0 2 769 0 1 63 2 540 1094 chain 131772 chr1 249250621 + 239068067 239069709 L1PA6 6164 + 4519 6161 27680 130 1 0 151 0 2 8 2 0 5 9 0 93 6 7 1085 0 15 8 15 0 116 0 9 13 chain 6479 chr1 249250621 + 239099670 239099748 MSTD 398 - 320 398 181399 78 chain 25350 chr1 249250621 + 239158821 239159114 AluYk4 311 - 18 311 102955 87 1 0 4 0 1 201 chain 14387 chr1 249250621 + 239161093 239161308 L1PA6 6164 - 2 220 143239 142 15 17 9 7 0 6 0 7 16 0 1 20 chain 19906 chr1 249250621 + 239164919 239165297 THE1D 372 + 0 372 127461 15 0 2 28 29 0 9 14 25 71 42 44 44 2 8 45 0 2 79 chain 11238 chr1 249250621 + 239165512 239165710 MER30 238 + 0 218 155266 18 12 20 64 7 0 11 7 30 23 1 0 33 3 0 19 chain 56748 chr1 249250621 + 239193231 239194000 MER4E1 777 - 7 777 54687 112 5 6 97 14 17 461 14 10 41 1 2 24 chain 27068 chr1 249250621 + 239194160 239194546 LTR7 482 + 0 466 96043 69 8 46 108 9 41 43 7 17 142 chain 83338 chr1 249250621 + 239202283 239203333 HERVL-int 5654 + 4593 5645 42187 230 0 1 5 4 3 238 5 6 73 0 5 275 4 0 216 chain 38617 chr1 249250621 + 239203342 239203883 MLT2A2 560 + 0 560 71273 146 0 1 17 24 28 203 11 24 46 0 1 94 chain 9288 chr1 249250621 + 239224294 239224412 LTR9B 643 + 445 561 164119 53 2 0 63 chain 4101 chr1 249250621 + 239242245 239242292 MLT1A0 366 - 61 108 205935 47 chain 386096 chr1 249250621 + 239242548 239247927 L1PB1 5432 - 5 5420 10572 5 2 0 18 11 13 21 1 0 6 45 40 15 17 7 6 2 0 15 1 0 41 10 9 10 2 1 53 2 0 6 24 23 21 3 0 7 0 7 297 1 9 166 1 3 116 0 4 247 0 3 520 21 15 220 20 48 42 0 4 311 20 18 224 23 14 203 2 4 78 5 8 49 0 1 21 9 10 786 13 56 69 5 6 79 9 8 54 3 0 10 0 8 113 30 15 16 4 8 9 0 2 150 37 10 63 7 8 241 1 2 152 0 1 88 0 1 383 0 2 109 1 0 7 chain 16191 chr1 249250621 + 239251687 239251870 L1PA5 6144 - 14 197 137779 183 chain 295243 chr1 249250621 + 239264921 239268701 HERVH-int 3825 + 0 3825 13687 376 0 2 139 0 1 14 9 4 34 1 0 10 1 0 24 43 14 13 3 0 29 124 0 37 1 0 82 1 0 444 15 0 206 9 0 29 0 2 10 1 0 216 0 5 88 0 1 226 0 4 81 3 8 971 9 11 39 8 218 260 0 2 35 6 7 183 chain 3435 chr1 249250621 + 239265672 239265716 HERVH-int 3825 + 673 716 216496 24 1 0 19 chain 26850 chr1 249250621 + 239269962 239270362 LTR7 482 + 0 482 96807 69 8 46 109 8 40 13 3 0 5 0 3 29 0 10 95 12 14 49 chain 38605 chr1 249250621 + 239284542 239284989 L1PA5 6144 + 5698 6144 71287 193 1 0 253 chain 23818 chr1 249250621 + 239303550 239303869 AluY 311 + 5 301 111373 128 34 11 157 chain 7652 chr1 249250621 + 239319853 239319972 MER21A 919 - 752 862 173212 12 9 1 8 0 1 25 2 0 63 chain 25855 chr1 249250621 + 239329473 239329778 L1PA6 6164 + 5857 6162 100631 305 chain 25964 chr1 249250621 + 239343898 239344205 AluY 311 + 1 301 100157 123 7 0 177 chain 15378 chr1 249250621 + 239361599 239361806 L1PA16 3655 + 3384 3590 140268 190 5 4 12 chain 31760 chr1 249250621 + 239363191 239363619 LTR2 463 + 0 451 81231 162 8 29 148 0 1 22 12 13 76 chain 40874 chr1 249250621 + 239398697 239399257 MER41A 554 - 0 554 68056 181 2 1 9 0 1 16 2 1 23 5 0 4 1 0 129 10 11 178 chain 3258 chr1 249250621 + 239401803 239401845 L1ME1 1623 + 1232 1274 219800 42 chain 13232 chr1 249250621 + 239418200 239418776 LTR12D 1347 - 347 831 147352 73 254 175 46 57 13 35 37 0 30 11 48 13 0 31 20 chain 1222 chr1 249250621 + 239418319 239418371 LTR12D 1347 - 265 316 206759 33 2 1 17 chain 46255 chr1 249250621 + 239465310 239465852 L1PA4 6152 + 5600 6143 61808 438 0 1 104 chain 10680 chr1 249250621 + 239478370 239478490 AluYc 301 + 161 281 157485 120 chain 23390 chr1 249250621 + 239528428 239528795 THE1C 375 - 0 373 113700 25 1 0 11 13 14 14 3 5 121 1 0 103 19 24 56 chain 24399 chr1 249250621 + 239536976 239537262 L1PA7 6471 + 6184 6468 108081 275 2 0 9 chain 19497 chr1 249250621 + 239571610 239571844 AluY 311 + 71 305 128663 52 2 0 155 0 2 25 chain 24308 chr1 249250621 + 239587102 239587382 AluY 311 + 29 310 108610 103 0 1 177 chain 13273 chr1 249250621 + 239589309 239589476 L1PA4 6152 - 19 172 147200 122 14 0 31 chain 5231 chr1 249250621 + 239589628 239589700 MER63B 433 + 315 386 192718 32 2 1 38 chain 19755 chr1 249250621 + 239593306 239593555 AluSg7 307 - 48 297 127944 107 0 3 7 7 4 128 chain 33155 chr1 249250621 + 239596776 239597357 L1PB1 5432 - 5 549 78979 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 13 9 1 17 2 0 15 1 0 41 22 20 50 43 35 21 3 0 5 9 6 220 chain 17258 chr1 249250621 + 239610867 239611083 AluSp 311 + 76 289 134899 56 3 0 157 chain 12696 chr1 249250621 + 239619225 239619521 LOR1b 457 - 76 416 149460 33 46 54 15 21 13 41 13 47 5 1 0 30 2 0 23 1 14 65 chain 3992 chr1 249250621 + 239633333 239633713 MLT1C 463 + 63 436 207500 26 315 308 39 chain 326331 chr1 249250621 + 239662939 239668343 L1PB1 5432 + 970 5413 12330 107 10 0 289 738 99 80 0 4 64 1 2 333 4 5 238 0 4 58 303 0 241 9 1 347 2 0 288 2 0 5 1 28 569 1 0 93 0 4 144 31 25 213 1 0 93 0 1 150 0 3 13 0 4 30 4 5 116 11 0 77 0 2 25 0 1 283 0 2 82 6 7 12 4 1 20 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 14 9 0 17 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 10862 chr1 249250621 + 239663345 239663463 L1P1 4361 - 342 460 156381 118 chain 38425 chr1 249250621 + 239663463 239663922 L1PA4 6152 + 5687 6152 71546 130 1 2 322 0 5 6 chain 21363 chr1 249250621 + 239681153 239681409 AluSx4 309 + 28 284 122643 256 chain 13886 chr1 249250621 + 239696549 239696754 THE1C 375 - 6 208 144967 132 13 9 42 1 2 17 chain 26871 chr1 249250621 + 239712194 239712546 THE1B 368 - 2 368 96741 194 9 8 109 1 16 39 chain 11048 chr1 249250621 + 239755853 239756060 L1MB8 1703 - 186 360 156024 87 60 27 60 chain 23913 chr1 249250621 + 239758118 239758400 AluSp 311 + 11 293 110846 282 chain 32576 chr1 249250621 + 239786417 239786784 L1PA5 6144 - 2 370 79891 95 0 1 272 chain 563572 chr1 249250621 + 239786798 239792823 L1HS 6032 - 1 6027 249 5118 0 1 907 chain 11644 chr1 249250621 + 239796118 239796268 THE1D 372 - 0 149 153722 32 1 0 117 chain 556416 chr1 249250621 + 239801068 239807209 L1PA3long 6157 - 0 6147 682 48 0 3 80 0 1 1603 0 1 460 0 1 4 1 0 79 1 0 1013 1 2 1786 0 1 1065 chain 55948 chr1 249250621 + 239828824 239829492 L1PA7 6471 - 3 673 55152 261 0 3 244 1 0 162 chain 26287 chr1 249250621 + 239844166 239844520 THE1A 353 - 0 353 98874 102 0 1 52 1 0 78 16 15 105 chain 3753 chr1 249250621 + 239847587 239847636 MER20 218 + 143 192 211090 38 1 0 6 0 1 4 chain 22444 chr1 249250621 + 239860431 239860736 THE1B 368 + 0 326 118275 40 0 15 114 1 0 50 4 6 47 10 16 5 1 0 33 chain 16470 chr1 249250621 + 239903765 239903979 L1PA8 5853 - 0 210 137011 93 1 0 19 2 1 52 1 0 9 2 1 35 chain 11322 chr1 249250621 + 239908796 239908931 L1PA7 6471 - 2 137 154992 135 chain 29696 chr1 249250621 + 239939967 239940344 THE1C 375 - 0 375 85845 25 1 0 164 2 1 185 chain 26618 chr1 249250621 + 239953212 239953588 THE1B-int 1605 + 1246 1599 97605 98 2 5 52 26 0 198 chain 20210 chr1 249250621 + 240036648 240036904 L1PA7 6471 - 1 261 126500 6 5 0 50 1 10 194 chain 3764 chr1 249250621 + 240038298 240038348 MADE1 96 + 31 96 210898 14 0 15 36 chain 24103 chr1 249250621 + 240041457 240041833 MER1A 529 - 121 498 109733 265 74 75 37 chain 7046 chr1 249250621 + 240085392 240085470 MLT2A1 477 + 399 477 177150 78 chain 3875 chr1 249250621 + 240087447 240087494 LTR12C 1709 - 168 215 209238 47 chain 12863 chr1 249250621 + 240103967 240104220 LTR47A 437 + 0 249 148787 116 16 6 39 54 60 28 chain 26397 chr1 249250621 + 240141957 240142309 THE1B 368 + 0 367 98421 11 1 2 26 1 16 119 1 0 4 0 1 5 1 0 183 chain 121316 chr1 249250621 + 240142322 240143886 THE1B-int 1605 + 13 1605 30595 419 8 33 229 1 2 6 1 0 45 0 1 103 7 8 9 1 2 213 0 1 144 0 1 56 3 0 251 0 1 58 0 1 4 1 0 5 chain 25091 chr1 249250621 + 240143887 240144240 THE1B 368 + 1 368 104343 43 0 15 56 0 11 5 11 0 36 2 0 5 11 12 184 chain 36490 chr1 249250621 + 240200591 240201056 LTR2 463 - 0 463 74250 24 1 0 28 1 0 30 0 1 239 6 5 136 chain 20759 chr1 249250621 + 240208460 240208686 L1PA4 6152 - 0 226 124759 226 chain 18514 chr1 249250621 + 240226720 240227041 HSMAR2 1300 - 963 1287 131462 79 46 42 78 20 23 61 0 4 37 chain 40419 chr1 249250621 + 240229261 240229724 LTR2 463 + 0 463 68704 463 chain 116192 chr1 249250621 + 240240794 240242263 THE1B-int 1605 + 92 1600 32377 212 5 6 120 0 25 80 0 1 51 0 1 82 8 7 11 12 11 4 0 1 41 0 11 441 0 1 402 chain 43845 chr1 249250621 + 240274560 240275113 MER41A 554 - 7 554 64391 119 0 1 186 0 1 76 10 1 45 0 1 117 chain 4171 chr1 249250621 + 240359748 240359799 MER5A 189 + 85 136 204963 51 chain 25312 chr1 249250621 + 240372924 240373208 AluY 311 + 2 287 103161 130 0 1 154 chain 302064 chr1 249250621 + 240384020 240387931 L1PA7 6471 - 3 3642 13318 142 6 5 700 6 0 31 10 0 24 1 0 88 0 5 119 267 7 64 1 0 33 0 1 244 0 1 57 3 0 436 0 8 336 0 1 613 0 4 25 1 0 21 1 0 190 5 4 366 16 9 105 chain 3313 chr1 249250621 + 240421622 240421700 MLT1A0 366 - 61 140 218727 23 1 0 8 8 9 17 8 9 13 chain 103623 chr1 249250621 + 240423068 240424534 L1PB1 5432 - 5 1436 35823 5 2 0 18 1 0 13 1 0 19 1 2 24 2 0 15 1 0 4 2 0 14 8 0 17 2 0 16 1 0 6 1 0 38 7 4 11 2 1 46 22 16 12 1 0 12 1 0 16 23 21 299 7 5 86 0 2 87 3 0 183 0 1 170 0 1 119 23 23 125 chain 31246 chr1 249250621 + 240427682 240428068 L1PA7 6471 - 1 386 82087 4 1 0 381 chain 5377 chr1 249250621 + 240429507 240429570 L1PA16 3655 - 77 140 191236 63 chain 71990 chr1 249250621 + 240438388 240439234 L1PA7 6471 - 1 843 47475 7 3 0 373 3 1 252 0 1 208 chain 15594 chr1 249250621 + 240471703 240471901 MER107 203 - 1 203 139606 33 2 5 56 0 1 107 chain 5453 chr1 249250621 + 240504709 240504775 HY1 111 + 45 111 190488 66 chain 3871 chr1 249250621 + 240511831 240511879 L1PA16 3655 - 563 611 209284 48 chain 40583 chr1 249250621 + 240523969 240524424 L1PA5 6144 + 5682 6137 68462 455 chain 36005 chr1 249250621 + 240557161 240557631 LOR1a 498 - 13 487 74890 13 12 13 29 0 3 416 chain 24820 chr1 249250621 + 240576147 240576449 AluY 311 + 8 311 105770 18 1 0 97 1 0 9 0 1 145 0 2 31 chain 36648 chr1 249250621 + 240578411 240578841 L1PA7 6471 + 6035 6470 74026 101 0 1 277 0 4 52 chain 4008 chr1 249250621 + 240610907 240610957 MADE1 96 + 45 96 207260 9 0 1 41 chain 21096 chr1 249250621 + 240615247 240615497 AluSc8 310 + 38 291 123565 94 0 3 156 chain 29554 chr1 249250621 + 240617007 240617319 AluYb8 318 + 0 312 86402 312 chain 24297 chr1 249250621 + 240619751 240620044 AluSp 311 - 7 300 108667 293 chain 5425 chr1 249250621 + 240652876 240652941 MER41B 635 + 481 547 190757 27 0 1 38 chain 22572 chr1 249250621 + 240657954 240658225 AluY 311 + 35 300 117704 97 0 1 160 7 0 7 chain 6146 chr1 249250621 + 240674616 240674697 MER2 342 + 131 213 184020 4 0 1 77 chain 25461 chr1 249250621 + 240683106 240683409 AluSp 311 + 8 311 102403 303 chain 25499 chr1 249250621 + 240684590 240684887 AluY 311 + 4 299 102223 128 2 0 167 chain 22652 chr1 249250621 + 240700809 240701088 AluSc 308 + 0 284 117310 15 0 7 42 2 0 220 chain 7489 chr1 249250621 + 240736643 240736826 MER96B 391 + 162 320 174216 34 52 31 46 2 0 14 1 0 7 2 1 25 chain 24741 chr1 249250621 + 240746907 240747201 AluSc 308 - 16 308 106214 161 2 0 131 chain 21926 chr1 249250621 + 240766121 240766396 AluY 311 + 30 296 120516 100 3 4 125 11 0 16 0 1 20 chain 43094 chr1 249250621 + 240768092 240768607 LTR10C 591 + 0 591 65298 13 1 0 81 0 2 10 0 72 322 7 10 81 chain 118032 chr1 249250621 + 240842361 240843941 L1PA11 4918 + 2744 4361 31795 26 2 1 41 37 32 73 1 0 4 0 2 227 0 6 42 0 1 40 0 1 15 0 9 25 0 1 74 0 6 295 6 7 406 3 17 215 0 4 17 1 0 30 chain 6384 chr1 249250621 + 240861635 240861727 HY1 111 + 16 111 182146 39 5 8 48 chain 25646 chr1 249250621 + 240866787 240867089 AluSp 311 - 3 303 101513 22 2 0 278 chain 24385 chr1 249250621 + 240882698 240882990 AluSc5 308 + 10 302 108166 292 chain 24998 chr1 249250621 + 240892906 240893203 AluY 311 + 0 300 104800 61 0 2 68 1 2 167 chain 36722 chr1 249250621 + 240897886 240898486 L1PB1 5432 - 12 584 73927 16 1 0 9 0 3 22 1 0 24 2 0 14 1 0 5 2 0 30 34 20 41 1 0 15 2 1 39 31 25 10 1 0 8 1 0 23 14 12 100 1 0 119 0 3 33 chain 19998 chr1 249250621 + 240915128 240915494 THE1D 372 + 0 369 127152 51 49 37 16 0 1 56 20 26 6 0 3 29 8 14 101 1 0 29 chain 116597 chr1 249250621 + 240925607 240926995 LTR12C 1709 + 0 1709 32262 262 0 1 47 0 1 231 0 1 185 1 164 180 1 50 102 0 4 168 0 102 211 chain 3906 chr1 249250621 + 240927080 240927123 LTR7 482 + 439 482 208757 43 chain 22930 chr1 249250621 + 240947673 240947956 AluY 311 + 15 293 115963 102 5 1 13 1 0 162 chain 3711 chr1 249250621 + 240949955 240949997 MER66B 489 + 295 337 211789 42 chain 94443 chr1 249250621 + 240952310 240953381 MER11C 1089 + 0 1073 38223 316 0 1 282 0 1 473 chain 13111 chr1 249250621 + 240962873 240963051 MER30B 195 - 8 195 147806 76 14 23 88 chain 26004 chr1 249250621 + 241016923 241017228 AluY 311 + 0 310 99997 75 0 3 54 0 1 16 0 1 160 chain 28774 chr1 249250621 + 241021038 241021410 THE1C 375 + 0 375 90002 37 0 1 146 1 2 108 0 2 53 1 0 26 chain 30281 chr1 249250621 + 241044449 241044807 L1PA6 6164 + 5805 6162 83992 192 1 0 165 chain 23544 chr1 249250621 + 241046213 241046473 L1PA4 6152 - 171 431 112887 260 chain 15154 chr1 249250621 + 241046473 241046641 L1PA4 6152 + 5984 6152 140900 168 chain 7081 chr1 249250621 + 241047804 241048355 L1PREC2 3366 + 2816 3238 176884 34 7 3 11 55 42 14 4 2 30 3 0 11 21 8 23 291 202 19 10 5 18 chain 528026 chr1 249250621 + 241058595 241064698 L1PA5 6144 - 5 6121 4403 146 1 2 606 0 1 86 1 4 6 0 1 533 0 1 37 1 0 365 0 4 127 1 0 1969 1 0 548 1 0 243 0 1 289 9 0 1021 0 14 112 chain 21845 chr1 249250621 + 241071388 241071652 L1PA6 6164 + 5894 6159 120833 4 0 1 260 chain 42076 chr1 249250621 + 241100093 241100668 LTR10B1 532 + 0 532 66525 170 1 0 4 8 0 16 32 0 41 4 2 299 chain 42720 chr1 249250621 + 241120288 241120844 MLT2A2 560 + 0 560 65751 126 0 1 38 14 15 23 0 1 312 4 5 39 chain 43655 chr1 249250621 + 241135542 241136009 L1PA2 6032 + 5565 6032 64622 467 chain 29212 chr1 249250621 + 241149871 241150181 AluYf4 310 - 0 310 87996 310 chain 7882 chr1 249250621 + 241164904 241165212 L1MC1 2226 + 1888 2184 171793 27 16 15 44 33 28 44 1 0 4 81 81 6 4 0 12 17 16 19 chain 26147 chr1 249250621 + 241173186 241173491 L1PA6 6164 + 5857 6162 99414 305 chain 39577 chr1 249250621 + 241182660 241183133 L1PA6 6164 - 3 473 69925 7 2 0 324 1 0 139 chain 4191 chr1 249250621 + 241200667 241200726 L1PB2 3958 + 3757 3814 204669 18 1 0 26 1 0 13 chain 4722 chr1 249250621 + 241209588 241209685 L1PA16 3655 - 52 134 198265 6 7 0 10 5 0 6 9 6 54 chain 6412 chr1 249250621 + 241212083 241212426 MLT1C 463 - 34 386 181928 58 243 252 42 chain 2991 chr1 249250621 + 241285634 241285679 MER47A 366 - 48 94 225226 21 1 2 23 chain 22862 chr1 249250621 + 241289463 241289727 AluSp 311 - 25 290 116274 29 0 1 235 chain 26657 chr1 249250621 + 241290713 241291002 L1PA4 6152 + 5862 6151 97463 289 chain 25720 chr1 249250621 + 241298078 241298444 MER48 407 + 0 342 101216 86 8 4 35 26 6 211 chain 27703 chr1 249250621 + 241306608 241306962 THE1B 368 - 0 367 94031 75 1 0 121 1 0 113 0 15 43 chain 21212 chr1 249250621 + 241326656 241327024 LTR49 580 + 41 427 123170 31 7 8 52 1 0 30 21 13 22 8 9 84 4 5 38 21 45 49 chain 42970 chr1 249250621 + 241328617 241329090 L1PA3long 6157 + 5683 6157 65449 114 0 1 359 chain 22391 chr1 249250621 + 241354288 241354578 AluSc 308 - 17 308 118529 137 2 0 5 0 2 111 3 4 32 chain 29066 chr1 249250621 + 241360551 241360853 AluYa5 310 - 8 310 88694 302 chain 26121 chr1 249250621 + 241382449 241382800 THE1B 368 + 6 368 99521 34 5 20 114 1 0 18 2 0 101 1 0 75 chain 3562 chr1 249250621 + 241385279 241385318 MLT2D 439 + 400 439 214284 39 chain 23798 chr1 249250621 + 241386096 241386376 L1PA7 6471 - 131 411 111489 280 chain 31661 chr1 249250621 + 241387398 241387808 L1PA7 6471 - 1 411 81386 129 0 1 11 7 6 263 chain 4471 chr1 249250621 + 241388481 241388552 L1PB4 2604 - 37 107 201107 15 5 4 51 chain 62028 chr1 249250621 + 241405265 241406328 L1PB1 5432 - 2 1002 51888 8 1 0 18 1 0 13 1 0 20 6 5 20 2 0 15 1 0 4 2 0 17 17 8 6 2 0 15 1 0 45 27 25 31 0 1 11 2 0 9 2 0 3 8 0 13 2 1 7 1 0 10 46 24 55 13 12 256 3 0 70 1 0 87 2 0 11 0 1 98 23 24 57 chain 87127 chr1 249250621 + 241407432 241408412 L1PA4 6152 + 5165 6152 40725 284 0 2 447 1 0 236 0 6 12 chain 24837 chr1 249250621 + 241422672 241422968 AluSp 311 + 0 300 105685 110 0 4 186 chain 17712 chr1 249250621 + 241424179 241424380 L1PA3long 6157 + 5954 6157 133674 196 0 2 5 chain 3297 chr1 249250621 + 241435239 241435276 MLT2B1 522 + 483 520 219055 37 chain 27812 chr1 249250621 + 241450535 241450900 THE1B 368 + 0 367 93655 169 1 0 32 0 1 6 7 11 11 1 0 12 1 0 125 chain 61525 chr1 249250621 + 241456985 241457737 L1PA8 5853 + 5088 5853 52105 271 0 1 204 1 0 46 2 0 72 1 0 22 1 18 38 1 0 93 chain 34313 chr1 249250621 + 241542887 241543381 MER41A 554 + 0 442 77187 137 1 0 137 29 0 76 22 0 92 chain 22161 chr1 249250621 + 241564507 241564859 MSTA 426 - 0 426 119539 109 10 48 20 24 22 90 3 27 10 0 14 86 chain 54125 chr1 249250621 + 241578984 241579559 SVA_F 1814 + 1240 1814 56276 564 1 0 10 chain 23662 chr1 249250621 + 241582948 241583305 THE1B 368 + 1 368 112241 62 1 2 104 1 0 29 1 0 4 36 47 119 chain 7827 chr1 249250621 + 241584120 241584249 L1MC2 1988 - 75 204 172143 64 22 17 6 0 5 37 chain 531801 chr1 249250621 + 241588295 241594690 L1PA7 6471 - 14 6471 3988 754 1 0 76 0 6 688 0 1 730 0 1 23 0 9 335 0 6 38 0 1 175 0 2 5 0 1 109 1 0 4 9 9 335 0 4 42 0 2 22 0 1 446 11 6 690 0 1 120 3 4 12 1 0 37 0 2 378 0 1 524 0 9 137 0 2 268 1 5 260 21 37 139 chain 329992 chr1 249250621 + 241597591 241601521 HERVH-int 3825 + 0 3825 12203 535 5 0 35 2 1 9 1 0 23 0 51 44 43 1 15 126 0 65 1 0 1042 3 18 304 0 4 154 0 1 178 0 1 68 1 0 1276 chain 2224 chr1 249250621 + 241598355 241598383 HERVH-int 3825 + 604 631 236321 15 1 0 12 chain 27751 chr1 249250621 + 241602781 241603182 LTR7 482 + 0 482 93862 69 8 46 109 5 37 24 1 0 29 0 10 95 13 15 48 chain 24764 chr1 249250621 + 241628651 241628939 AluSp 311 - 12 301 106088 40 0 1 248 chain 28767 chr1 249250621 + 241629783 241630209 MSTA 426 - 0 426 90032 109 9 17 64 2 0 32 1 0 5 2 0 70 1 0 25 3 4 10 14 11 79 chain 15100 chr1 249250621 + 241670462 241670650 Tigger3a 397 + 139 327 141031 188 chain 25239 chr1 249250621 + 241679958 241680250 AluSc 308 - 16 308 103536 292 chain 20154 chr1 249250621 + 241742047 241742409 THE1B 368 - 0 368 126663 56 1 2 6 2 0 61 62 68 49 16 17 109 chain 3781 chr1 249250621 + 241762802 241762847 MADE1 96 + 51 96 210649 45 chain 17526 chr1 249250621 + 241795309 241795610 THE1B 368 + 0 310 134192 105 10 12 58 0 3 7 54 58 67 chain 58996 chr1 249250621 + 241822725 241823682 L1PA11 4918 - 289 1205 53401 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 47 37 12 4 0 17 1 0 15 9 7 59 2 0 13 2 1 14 1 2 35 0 1 10 5 0 86 0 1 270 26 21 157 0 2 81 chain 4895 chr1 249250621 + 241833176 241833247 MER5A1 166 + 52 124 196322 26 1 2 44 chain 28466 chr1 249250621 + 241836321 241836647 L1PA4 6152 + 5823 6152 91315 183 0 7 133 4 0 6 chain 109399 chr1 249250621 + 241844448 241845970 L1PB1 5432 - 14 1496 34346 14 1 0 13 1 0 21 1 0 21 15 13 4 1 0 5 2 0 30 14 1 16 1 0 43 1 0 16 2 1 53 2 0 8 5 1 12 1 0 8 1 0 24 15 11 376 17 13 93 11 7 51 0 2 49 6 8 335 1 0 206 0 1 26 chain 65126 chr1 249250621 + 241883619 241884641 L1PA11 4918 - 289 1280 50517 18 60 44 13 1 0 13 10 6 14 2 0 4 3 0 9 10 6 14 2 1 13 2 0 66 2 1 13 7 6 62 2 0 24 1 2 111 1 6 545 chain 41643 chr1 249250621 + 241905567 241906108 MER41A 554 + 0 547 67098 39 3 4 50 0 1 302 11 15 19 1 2 93 1 0 22 chain 164709 chr1 249250621 + 241917549 241919836 L1PA7 6471 - 5 1981 22697 8 0 1 32 330 0 225 0 1 62 1 0 350 5 6 81 0 2 74 0 3 59 0 4 10 0 1 293 2 0 399 0 1 262 0 8 94 chain 16731 chr1 249250621 + 241924061 241924237 AluYk12 309 - 4 180 136314 176 chain 121286 chr1 249250621 + 242018019 242019441 LTR12C 1709 - 0 1709 30608 481 0 4 77 1 0 35 1 0 98 0 278 125 0 1 173 0 1 125 0 1 47 0 1 172 0 3 87 chain 18177 chr1 249250621 + 242022631 242022985 Tigger4b 360 + 0 345 132392 20 0 7 40 9 15 33 6 39 5 3 0 5 0 3 57 52 0 48 2 0 25 1 0 48 chain 20870 chr1 249250621 + 242030471 242030823 THE1B 368 - 0 361 124390 125 60 68 58 11 12 98 chain 62005 chr1 249250621 + 242035667 242036383 L1PA7 6471 - 10 726 51898 716 chain 12994 chr1 249250621 + 242036389 242036534 L1PA4 6152 - 12 157 148265 145 chain 2869 chr1 249250621 + 242062935 242063104 MIR 256 - 33 188 227540 20 122 108 27 chain 9835 chr1 249250621 + 242070071 242070185 MER57A1 433 + 0 114 161425 114 chain 3900 chr1 249250621 + 242096559 242096609 MER115 684 + 494 544 208850 50 chain 23680 chr1 249250621 + 242099381 242099672 AluSg7 307 + 5 297 112155 120 0 1 171 chain 14605 chr1 249250621 + 242112473 242112670 L1PA8A 6298 - 36 233 142568 92 0 1 72 6 5 27 chain 25735 chr1 249250621 + 242113256 242113552 AluY 311 + 6 300 101140 126 0 1 157 3 0 10 chain 7265 chr1 249250621 + 242133824 242133948 MER90a 614 + 178 302 175688 47 9 8 27 5 6 36 chain 44074 chr1 249250621 + 242136861 242137414 MER41A 554 - 0 553 64131 32 9 8 471 3 4 38 chain 25567 chr1 249250621 + 242166203 242166526 AluSp 311 - 1 311 101888 28 14 0 190 0 1 91 chain 6477 chr1 249250621 + 242187260 242187345 U6 107 - 10 96 181411 30 3 4 52 chain 560065 chr1 249250621 + 242208863 242214887 L1PA2 6032 - 0 6029 355 150 0 1 1651 0 4 4223 chain 77826 chr1 249250621 + 242221348 242222365 L1PA7 6471 - 2 1056 44606 10 2 0 20 6 15 100 4 3 13 0 1 215 0 2 92 0 2 5 0 1 16 0 1 47 1 0 196 0 3 12 4 7 6 0 2 26 0 7 50 0 3 8 1 5 94 1 4 88 chain 5805 chr1 249250621 + 242236994 242237061 FRAM 166 + 88 155 187088 67 chain 201860 chr1 249250621 + 242260053 242262405 L1PA4 6152 - 0 5548 19079 10 0 6 128 6 0 11 1 2 693 0 4 446 0 3190 287 0 1 770 chain 47544 chr1 249250621 + 242284853 242285390 L1PA5 6144 + 5594 6132 60815 442 0 1 95 chain 124035 chr1 249250621 + 242289415 242291066 L1PB1 5432 + 3751 5390 29690 23 0 12 22 0 4 170 4 6 4 0 1 10 1 0 260 0 1 345 0 4 15 0 1 333 0 1 39 0 1 100 1 2 7 2 0 3 3 0 23 1 0 8 1 0 12 5 1 9 2 0 5 4 3 44 2 1 16 1 0 42 5 4 13 11 0 9 6 1 21 2 0 5 1 0 14 2 0 24 1 0 20 chain 511980 chr1 249250621 + 242315662 242322074 L1PA7 6471 - 4 6469 5978 336 2 1 501 0 6 365 2 0 331 0 5 244 0 4 191 0 1 8 0 1 194 6 5 265 1 0 321 3 0 84 1 0 22 0 2 57 1 0 23 1 0 517 0 1 22 1 0 950 1 0 348 0 1 315 1 0 4 7 8 50 12 31 36 0 4 131 13 20 30 0 13 116 14 14 59 0 6 66 9 16 59 12 8 88 19 16 158 1 0 126 4 0 43 0 1 241 chain 378018 chr1 249250621 + 242332450 242338354 L1PA5 6144 + 5 6144 10816 123 1 15 97 43 44 44 248 59 76 19 0 51 49 40 27 315 236 31 11 10 24 10 0 8 18 32 23 19 18 65 48 51 52 104 95 78 151 166 79 5 7 25 0 1 255 0 4 159 21 15 289 3 0 10 1 0 249 0 4 14 28 38 100 15 16 38 0 4 399 1 0 97 6 7 192 0 1 23 9 6 90 0 477 272 0 4 283 0 5 124 2 0 1232 0 7 148 chain 201385 chr1 249250621 + 242338354 242340872 L1PA7 6471 + 3909 6467 19103 301 0 2 130 1 2 372 29 43 683 0 1 66 0 2 111 0 7 80 4 5 326 0 14 18 5 1 234 1 4 5 3 0 134 4 6 11 chain 33934 chr1 249250621 + 242357607 242358325 L1PB1 5432 + 4851 5427 77723 214 3 1 28 131 23 21 2 1 8 1 0 11 7 3 7 2 0 52 6 5 11 1 0 41 8 9 25 13 0 16 2 0 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 18 2 0 5 chain 22566 chr1 249250621 + 242367256 242367560 AluY 311 + 0 297 117732 133 16 10 133 2 1 20 chain 20622 chr1 249250621 + 242369818 242370115 Tigger2 2703 - 68 386 125216 38 5 24 37 13 11 53 0 4 151 chain 33967 chr1 249250621 + 242373619 242374161 LTR7 482 + 0 473 77663 136 102 0 88 5 37 158 13 14 40 chain 5840 chr1 249250621 + 242373785 242373850 LTR7 482 + 115 180 186763 65 chain 28829 chr1 249250621 + 242410273 242410583 AluYg6 310 - 0 310 89766 310 chain 5234 chr1 249250621 + 242411686 242411757 L1PA7 6471 + 6398 6468 192685 59 2 1 10 chain 9723 chr1 249250621 + 242411796 242411937 LTR56 451 + 212 356 161970 71 10 13 60 chain 9467 chr1 249250621 + 242418797 242418907 L1PA5 6144 + 6031 6141 163237 110 chain 33871 chr1 249250621 + 242436230 242436673 L1PA8 5853 - 6 442 77828 87 1 0 19 2 1 52 2 1 8 5 4 56 11 9 46 1 0 153 chain 6589 chr1 249250621 + 242459108 242459194 L1PA17 2846 - 153 237 180548 43 1 0 19 1 0 22 chain 30214 chr1 249250621 + 242460923 242461240 AluYb8 318 - 1 318 84150 317 chain 9898 chr1 249250621 + 242465399 242465538 Tigger3a 397 + 161 290 161080 10 10 0 119 chain 3269 chr1 249250621 + 242466329 242466365 tRNA-Leu-CTG 83 - 47 83 219616 36 chain 10014 chr1 249250621 + 242472465 242472624 MER107 203 + 0 162 160515 48 6 1 77 10 18 18 chain 4908 chr1 249250621 + 242474740 242474796 MER5A 189 - 133 189 196181 56 chain 63847 chr1 249250621 + 242495194 242495939 L1PA7 6471 - 5 752 51080 473 0 3 186 1 0 85 chain 11854 chr1 249250621 + 242511916 242512074 MER4B 649 - 18 175 152817 64 4 3 90 chain 8688 chr1 249250621 + 242517861 242518106 L1MA7 2200 - 1953 2198 167256 21 0 3 51 35 32 36 64 61 16 5 8 17 chain 15865 chr1 249250621 + 242535170 242535392 L1PA7 6471 - 1 215 138754 144 9 5 12 5 1 52 chain 141263 chr1 249250621 + 242535624 242537280 L1PA5 6144 + 4512 6144 25942 785 0 1 27 9 1 20 0 1 634 20 20 23 20 2 118 chain 3545 chr1 249250621 + 242548567 242548609 LTR14B 630 + 0 42 214634 42 chain 19344 chr1 249250621 + 242552014 242552281 AluSg7 307 + 38 306 129098 80 1 0 13 6 7 119 1 2 47 chain 4829 chr1 249250621 + 242568612 242568727 MER20 218 + 36 153 197028 20 47 49 48 chain 6174 chr1 249250621 + 242573989 242574058 MER85 139 + 13 82 183779 69 chain 41271 chr1 249250621 + 242622411 242622872 HERVK11D-int 613 + 153 613 67573 135 1 0 325 chain 77710 chr1 249250621 + 242622873 242623744 MER11D 897 + 1 897 44651 590 0 24 153 0 1 128 chain 9558 chr1 249250621 + 242629734 242629878 L1MA7 2200 + 1770 1912 162787 60 1 0 9 1 0 8 0 3 5 3 0 57 chain 541388 chr1 249250621 + 242644375 242650511 L1PA4 6152 + 0 6139 2607 1039 0 1 2170 0 1 928 5 6 79 9 4 1044 0 1 31 0 4 831 chain 41442 chr1 249250621 + 242726661 242727196 MLT2A2 560 + 1 560 67356 85 0 3 76 7 8 187 0 1 45 0 19 135 chain 520895 chr1 249250621 + 242749944 242756384 L1PA7 6471 + 0 6461 5069 403 7 0 205 1 0 280 4 8 6 4 0 11 0 1 394 0 3 481 0 1 827 0 2 8 0 2 4 1 0 122 0 4 96 0 1 30 42 58 544 1 0 6 5 0 47 0 4 28 4 8 1081 0 4 5 0 2 180 4 8 329 4 0 406 0 4 18 9 10 69 0 2 10 0 3 233 3 1 358 17 1 153 chain 21023 chr1 249250621 + 242759228 242759547 MER61-int 3695 + 733 1101 123840 4 0 1 25 2 0 56 0 49 73 4 3 8 1 3 89 4 6 5 2 0 46 chain 7914 chr1 249250621 + 242759743 242759848 MER57-int 2662 + 938 1041 171561 5 1 0 55 1 0 43 chain 72579 chr1 249250621 + 242759854 242760863 MER11A 1151 + 6 1151 47230 79 0 91 54 1 0 64 4 0 33 0 2 53 2 1 5 0 1 41 13 14 94 0 1 145 0 1 46 0 1 11 0 4 61 0 1 12 8 41 37 2 1 20 0 1 14 1 2 44 6 7 123 6 10 30 chain 19912 chr1 249250621 + 242771128 242771473 THE1D 372 - 34 372 127432 127 44 45 87 35 27 52 chain 172283 chr1 249250621 + 242778278 242780268 L1P1 4361 + 2353 4341 21784 806 1 0 138 0 1 205 0 1 646 1 0 155 1 0 23 2 1 12 chain 9145 chr1 249250621 + 242781618 242781731 L1PA5 6144 + 6027 6142 164831 50 0 2 63 chain 45782 chr1 249250621 + 242782044 242782625 L1PA8 5853 + 5269 5853 62246 293 1 0 48 2 0 14 10 19 45 1 0 52 2 1 19 1 0 93 chain 187243 chr1 249250621 + 242813905 242816315 L1PBa1 4058 - 1650 4048 20313 111 1 0 262 9 8 221 1 0 144 1 0 481 0 2 49 12 13 11 3 0 154 0 2 67 6 7 245 14 13 184 5 4 39 5 0 335 1 0 7 24 21 18 chain 8642 chr1 249250621 + 242817279 242817374 L1PA7 6471 + 5489 5584 167527 95 chain 73576 chr1 249250621 + 242817394 242818243 L1PA7 6471 + 5621 6470 46747 849 chain 15400 chr1 249250621 + 242822735 242823019 MER65A 464 - 17 299 140202 26 7 6 101 1 0 67 58 58 24 chain 5195 chr1 249250621 + 242825480 242825542 MSTD 398 + 286 348 193082 62 chain 46547 chr1 249250621 + 242835206 242835763 L1PA7 6471 + 5910 6468 61560 398 7 8 152 chain 2582 chr1 249250621 + 242844348 242844398 LTR39 781 - 693 742 231899 11 10 9 29 chain 43444 chr1 249250621 + 242861806 242862350 MLT2A2 560 - 0 560 64880 147 3 14 80 4 8 31 0 1 279 chain 59826 chr1 249250621 + 242868071 242868834 L1PA10 4194 + 3364 4150 52918 299 1 4 20 0 8 230 2 1 43 8 24 123 3 0 34 chain 15339 chr1 249250621 + 242876991 242877160 L1PA4 6152 + 5132 5301 140371 169 chain 50075 chr1 249250621 + 242877169 242877715 L1PA4 6152 + 5302 5848 58963 546 chain 27476 chr1 249250621 + 242877723 242878022 L1PA4 6152 + 5853 6152 94730 299 chain 122484 chr1 249250621 + 242911875 242913224 L1PA3long 6157 - 2 1358 30226 622 0 1 218 0 4 504 0 2 5 chain 4392 chr1 249250621 + 242913731 242913796 MER53 195 - 128 195 202039 9 0 1 15 4 5 37 chain 18728 chr1 249250621 + 242930015 242930252 L1PA5 6144 - 15 262 130884 144 6 16 87 chain 13500 chr1 249250621 + 242936935 242937583 LTR12C 1709 - 132 937 146362 36 1 0 43 227 464 32 197 0 48 7 125 57 chain 6290 chr1 249250621 + 243005403 243005569 MLT1C 463 - 220 400 182883 30 23 22 28 1 0 6 27 41 13 6 8 32 chain 16493 chr1 249250621 + 243006891 243007145 LOR1b 457 - 17 309 136946 49 0 3 142 30 71 15 6 0 12 chain 404983 chr1 249250621 + 243012512 243017892 L1PB1 5432 - 28 5408 9948 9 0 3 22 1 0 22 2 0 11 13 10 15 9 0 13 2 0 4 1 0 15 1 0 43 2 1 15 2 1 50 3 1 11 16 11 13 9 8 11 5 0 9 18 23 450 4 5 238 0 1 367 0 1 17 13 12 46 0 1 121 0 4 78 13 15 191 0 4 906 0 5 7 14 9 122 7 8 229 0 1 16 1 2 154 1 2 70 3 0 5 4 7 256 0 1 129 0 11 174 8 7 14 21 5 57 0 13 760 3 4 534 chain 56174 chr1 249250621 + 243030240 243030906 L1PA7 6471 + 4856 5534 55027 196 0 5 281 0 8 97 1 0 91 chain 77283 chr1 249250621 + 243030906 243031836 L1PA7 6471 + 5535 6467 44840 86 1 0 77 0 2 49 1 0 382 0 1 248 0 3 76 2 0 8 chain 39795 chr1 249250621 + 243054906 243055820 LTR2 463 - 0 463 69632 44 451 0 419 chain 39583 chr1 249250621 + 243054955 243055391 L1PA2 6032 + 5597 6032 69914 165 2 1 269 chain 3227 chr1 249250621 + 243065243 243065284 MER39 703 + 599 641 220472 6 0 1 35 chain 6807 chr1 249250621 + 243065401 243065501 L1MA7 2200 + 1758 1857 178898 77 6 5 17 chain 29518 chr1 249250621 + 243086570 243087257 MER39B 650 + 3 495 86569 11 7 10 59 0 1 4 1 0 5 27 26 109 15 13 22 1 0 63 3 2 19 1 7 13 199 0 128 chain 22792 chr1 249250621 + 243091789 243092082 AluSc8 310 + 0 304 116621 64 0 7 60 10 14 159 chain 228070 chr1 249250621 + 243110829 243114593 L1PA13 3608 + 116 3468 17414 19 32 28 14 3 0 24 28 17 68 10 8 122 1 0 12 1 0 20 0 2 7 23 13 11 1 0 16 6 4 15 2 0 17 5 4 94 1 2 95 0 5 35 13 14 109 0 1 487 5 0 46 17 15 448 72 70 35 1 0 131 5 6 22 4 0 86 3 4 56 355 0 30 2 1 152 7 8 180 12 14 6 2 0 160 5 4 52 23 24 152 2 1 78 1 0 14 15 11 88 2 0 23 1 2 36 1 0 55 3 0 6 6 4 44 2 0 5 2 0 20 chain 25340 chr1 249250621 + 243119642 243119927 AluY 311 + 15 299 103016 32 2 1 251 chain 36052 chr1 249250621 + 243130277 243130752 LOR1a 498 - 0 473 74830 61 10 6 132 2 4 270 chain 38985 chr1 249250621 + 243156464 243157121 LTR9B 643 + 0 643 70760 133 0 2 65 4 9 5 0 2 172 11 12 29 67 41 32 12 1 14 3 17 57 13 12 40 chain 57177 chr1 249250621 + 243158405 243159473 MER4E1 777 + 0 772 54421 17 7 0 24 1 0 155 7 5 4 1 0 127 309 0 158 3 25 28 6 4 9 0 4 212 chain 17471 chr1 249250621 + 243172044 243172339 LTR39 781 - 307 604 134325 18 3 23 8 11 0 142 40 33 73 chain 8867 chr1 249250621 + 243172348 243172455 L1PA4 6152 - 0 113 166297 6 0 5 20 0 1 81 chain 87430 chr1 249250621 + 243240554 243241606 MER11B 1079 + 0 1064 40589 316 1 18 49 0 1 388 8 2 290 chain 22093 chr1 249250621 + 243253889 243254171 AluSp 311 - 25 309 119823 219 12 14 51 chain 25511 chr1 249250621 + 243269324 243269678 THE1B 368 + 0 368 102177 44 7 22 106 10 9 66 0 1 46 1 0 74 chain 3125 chr1 249250621 + 243274689 243274744 Arthur1B 1073 + 813 867 222459 13 1 2 27 2 0 12 chain 4063 chr1 249250621 + 243280536 243280671 LTR37A 408 - 52 204 206440 13 6 4 37 57 76 22 chain 6977 chr1 249250621 + 243309349 243309452 L1PB1 5432 + 5178 5279 177620 41 4 3 14 1 0 43 chain 61873 chr1 249250621 + 243314641 243315524 Tigger1 2417 + 537 1445 51959 16 8 12 92 0 1 73 0 2 79 0 7 127 15 16 66 8 11 83 1 0 102 9 13 62 1 0 100 0 5 41 chain 24586 chr1 249250621 + 243336367 243336649 AluSp 311 - 17 299 107057 282 chain 3448 chr1 249250621 + 243348312 243348352 MADE1 96 + 2 42 216235 40 chain 3453 chr1 249250621 + 243368647 243368685 MER58A 224 - 5 43 216159 38 chain 85324 chr1 249250621 + 243378236 243379310 MER11B 1079 + 0 1079 41407 175 2 1 49 0 5 86 1 18 407 10 0 25 5 7 169 0 2 89 0 1 21 11 0 24 chain 23071 chr1 249250621 + 243379506 243379768 L1PA3long 6157 - 0 260 115292 142 1 0 13 1 0 105 chain 15354 chr1 249250621 + 243380222 243380480 Tigger3a 397 - 0 343 140331 41 30 29 14 5 0 127 1 92 40 chain 12765 chr1 249250621 + 243387659 243387848 MER30 238 - 0 205 149192 80 0 6 28 4 0 8 12 26 57 chain 23853 chr1 249250621 + 243422420 243422714 AluY 311 + 0 288 111165 77 2 1 40 6 0 14 1 2 154 chain 24073 chr1 249250621 + 243439158 243439463 AluSc5 308 - 1 308 109914 30 1 3 274 chain 27843 chr1 249250621 + 243459837 243460134 AluYd8 298 - 4 298 93553 180 3 0 114 chain 16817 chr1 249250621 + 243484727 243484960 L1PA16 3655 - 98 332 136075 151 8 9 74 chain 29154 chr1 249250621 + 243500187 243500641 L1P4 1494 - 84 525 88287 20 22 20 20 1 0 72 7 0 7 0 6 49 16 7 240 chain 22430 chr1 249250621 + 243511994 243512280 AluSp 311 + 1 274 118337 51 1 2 74 14 0 146 chain 6826 chr1 249250621 + 243512697 243512779 MER58A 224 + 130 212 178750 82 chain 2311 chr1 249250621 + 243534672 243534716 MIR 256 + 90 134 235305 12 1 3 6 2 0 23 chain 11444 chr1 249250621 + 243575591 243575760 MER30 238 - 12 189 154520 40 0 3 50 2 0 12 11 18 54 chain 23330 chr1 249250621 + 243641994 243642283 AluSc 308 + 16 304 114025 109 2 1 178 chain 38486 chr1 249250621 + 243693604 243694131 L1PREC2 3366 + 849 1385 71461 259 0 1 134 15 16 47 0 3 18 8 12 46 chain 20380 chr1 249250621 + 243709270 243709568 THE1B 368 + 2 306 125961 167 1 0 21 18 27 14 1 0 11 2 1 63 chain 22180 chr1 249250621 + 243734349 243734612 AluSc5 308 + 10 274 119440 49 0 1 214 chain 66806 chr1 249250621 + 243739378 243740245 L1PA10 4194 + 3276 4150 49731 433 0 3 80 0 8 282 1 0 32 8 5 31 chain 17142 chr1 249250621 + 243771043 243771350 THE1C 375 + 14 335 135195 49 0 2 13 76 84 19 0 1 21 0 3 129 chain 6718 chr1 249250621 + 243779382 243779580 L1PB1 5432 - 10 192 179550 18 0 4 8 1 0 22 1 0 24 69 52 13 1 0 12 11 11 18 chain 205921 chr1 249250621 + 243812732 243815184 L1PA7 6471 - 17 2489 18797 104 1 0 256 1 0 4 0 1 339 0 1 71 0 3 55 1 4 340 0 1 78 0 3 388 0 2 126 0 8 688 chain 103770 chr1 249250621 + 243815184 243816819 L1P2 5180 + 1696 3665 35748 152 295 0 112 6 31 124 0 4 200 14 0 224 0 614 13 2 1 12 4 0 81 0 5 396 chain 6307 chr1 249250621 + 243822354 243822454 L1MB1 2102 + 1879 1977 182733 55 12 10 33 chain 41310 chr1 249250621 + 243823169 243823627 L1PA3long 6157 - 2388 2846 67185 458 chain 217838 chr1 249250621 + 243823627 243826017 L1PA3long 6157 + 3759 6156 18011 595 0 4 478 0 3 1317 chain 126273 chr1 249250621 + 243847463 243848975 L1PA7 6471 - 4 1494 29011 15 1 0 701 0 1 124 2 6 261 25 0 142 1 0 240 chain 49797 chr1 249250621 + 243848975 243849547 L1PA7 6471 + 4376 4949 59098 198 1 2 373 chain 21917 chr1 249250621 + 243920649 243920930 AluSq 315 + 12 294 120556 121 0 2 123 9 8 28 chain 125951 chr1 249250621 + 243935071 243936493 L1PA5 6144 + 4713 6138 29116 584 0 4 12 4 3 656 1 0 4 0 1 161 chain 29033 chr1 249250621 + 243958760 243959072 AluYa5 310 - 0 310 88840 16 2 0 294 chain 535417 chr1 249250621 + 243970356 243976485 L1PA5 6144 + 0 6139 3532 951 0 1 74 0 2 722 1 0 563 1 0 618 0 1 112 0 8 63 2 1 566 1 0 161 0 1 23 0 1 12 0 2 467 0 4 88 1 0 1070 0 3 296 1 2 106 9 0 221 chain 286646 chr1 249250621 + 243983550 243987289 L1PA10 4194 + 387 4161 14249 8 10 0 8 1 0 85 16 13 58 19 23 154 0 1 114 0 18 276 26 25 32 0 1 81 0 4 53 14 10 40 0 3 6 3 0 32 0 1 437 0 3 349 0 4 404 8 6 278 0 1 231 0 1 181 0 1 110 4 8 157 6 10 35 0 1 256 0 13 197 4 1 11 1 0 22 1 0 11 chain 8349 chr1 249250621 + 243996070 243996201 Tigger3a 397 - 166 349 169127 43 0 3 46 15 64 27 chain 15416 chr1 249250621 + 244003601 244003814 L1PA8 5853 + 5637 5853 140147 42 1 0 43 0 6 12 2 1 15 6 5 92 chain 7578 chr1 249250621 + 244016715 244016859 MLT1A0 366 - 213 361 173681 40 2 1 34 21 25 27 2 3 18 chain 81479 chr1 249250621 + 244040216 244041135 L1PA4 6152 - 9 930 42980 841 0 2 78 chain 9532 chr1 249250621 + 244068509 244068637 MER85 139 - 0 139 162920 23 0 7 7 2 6 96 chain 20939 chr1 249250621 + 244074889 244075175 L1PA8 5853 + 5573 5853 124152 35 2 0 70 2 1 6 8 0 9 0 7 39 2 1 19 1 0 93 chain 26878 chr1 249250621 + 244153417 244154266 THE1B 368 - 0 367 96707 78 3 0 90 495 2 26 1 0 113 0 15 43 chain 24604 chr1 249250621 + 244162781 244163071 AluSg7 307 - 16 307 106976 164 0 1 126 chain 3863 chr1 249250621 + 244163653 244163696 L1MC3 1789 + 1334 1377 209398 43 chain 43414 chr1 249250621 + 244325212 244325762 MER41A 554 - 0 554 64918 123 0 1 32 0 1 172 3 4 117 10 11 93 chain 4641 chr1 249250621 + 244369148 244369212 MER41B 635 - 89 154 199180 35 1 2 28 chain 8883 chr1 249250621 + 244371491 244371586 L1PA5 6144 - 15 110 166217 95 chain 8220 chr1 249250621 + 244371586 244371679 L1PA5 6144 + 5935 6028 169832 93 chain 4241 chr1 249250621 + 244378361 244378415 MSTB 430 - 14 69 203992 31 0 1 23 chain 25015 chr1 249250621 + 244384547 244384823 L1PA5 6144 + 5856 6132 104709 276 chain 22913 chr1 249250621 + 244406418 244406711 AluSp 311 + 0 287 116042 19 5 1 201 3 1 65 chain 47179 chr1 249250621 + 244412948 244413470 L1PA4 6152 - 5 531 61063 110 0 3 25 0 1 387 chain 11052 chr1 249250621 + 244441875 244442188 THE1D 372 + 0 319 156006 51 3 0 13 130 121 6 0 2 16 13 29 81 chain 17045 chr1 249250621 + 244470118 244470444 L1MA3 4352 - 0 295 135472 22 6 2 13 1 0 27 1 0 6 1 0 24 2 0 23 4 0 14 0 4 98 48 26 36 chain 23070 chr1 249250621 + 244472511 244472876 THE1B 368 + 0 368 115296 113 0 1 55 1 0 6 7 6 17 0 3 8 1 5 14 22 20 58 17 16 46 chain 6593 chr1 249250621 + 244494286 244494359 MER21B 843 + 631 704 180515 73 chain 51779 chr1 249250621 + 244497872 244498476 L1PA6 6164 + 5344 5953 57766 38 0 1 181 0 2 309 0 2 76 chain 32220 chr1 249250621 + 244501544 244502094 L1PB1 5432 - 12 533 80486 16 1 0 13 1 0 21 1 0 24 24 19 18 9 0 13 4 1 15 1 0 43 6 5 13 1 0 52 2 0 5 10 6 9 1 0 12 1 0 21 1 0 11 5 0 87 0 2 83 0 6 26 chain 27995 chr1 249250621 + 244514018 244514431 LTR7 482 + 39 477 93013 62 20 14 120 1 32 107 1 0 41 19 20 42 chain 20629 chr1 249250621 + 244515080 244515366 AluSc8 310 + 10 307 125194 82 3 6 22 7 11 139 9 13 24 chain 6806 chr1 249250621 + 244522614 244522690 L1MA3 4352 + 3283 3359 178903 76 chain 7769 chr1 249250621 + 244554274 244554398 ERVL-int 1947 - 96 215 172489 43 2 0 21 5 4 25 2 0 26 chain 325516 chr1 249250621 + 244654314 244657906 L1PA4 6152 + 2554 6143 12367 293 0 1 291 0 1 1598 4 0 661 1 0 744 chain 149398 chr1 249250621 + 244662641 244664466 L1PA8 5853 - 0 1818 24701 93 1 0 19 3 2 50 1 0 9 2 1 69 2 0 46 1 0 215 1 0 193 5 4 65 1 0 76 0 2 10 2 1 782 0 1 61 0 1 118 chain 324726 chr1 249250621 + 244685208 244688800 L1PA3long 6157 + 2560 6156 12404 15 0 4 389 0 1 726 1 0 2461 chain 88805 chr1 249250621 + 244690046 244691142 MER11B 1079 - 0 1079 40081 21 4 5 281 6 0 31 10 0 146 1 0 336 3 0 81 1 3 175 chain 127097 chr1 249250621 + 244692145 244694250 L1MA3 4352 - 277 2045 28791 76 7 6 219 0 2 152 20 32 185 16 16 134 50 0 169 8 14 63 307 0 263 9 8 11 1 0 129 0 1 5 0 1 16 9 10 103 0 1 146 1 0 6 chain 79292 chr1 249250621 + 244702432 244703308 L1PA3long 6157 - 2158 3033 43915 816 1 0 59 chain 196327 chr1 249250621 + 244703308 244705458 L1PA3long 6157 + 3993 6146 19479 364 0 4 229 2 1 1555 chain 3018 chr1 249250621 + 244720630 244720778 L1M3 994 - 675 823 224657 21 20 19 25 65 66 17 chain 526528 chr1 249250621 + 244726035 244732688 L1PA7 6471 - 3 6468 4541 6 5 0 408 30 0 352 0 2 75 1 5 20 7 8 185 0 1 94 0 5 382 5 6 247 0 4 994 0 5 104 12 16 27 96 0 196 0 12 91 0 4 169 4 0 409 26 0 44 0 5 138 0 1 649 6 7 64 0 1 101 1 6 137 5 6 115 0 1 452 0 1 327 0 1 176 24 0 112 115 45 147 4 11 91 chain 4538 chr1 249250621 + 244732368 244732416 L1PA7 6471 - 6219 6267 200355 48 chain 44231 chr1 249250621 + 244737159 244737795 LTR10E 629 - 0 620 63910 6 1 0 35 17 15 274 6 5 120 17 14 56 8 0 88 1 0 7 chain 9887 chr1 249250621 + 244738109 244738239 HERVIP10FH-int 2884 - 2593 2723 161147 83 4 3 16 0 1 27 chain 6441 chr1 249250621 + 244739646 244739757 LTR10E 629 - 6 115 177316 41 27 25 43 chain 8648 chr1 249250621 + 244739757 244739909 LTR10E 629 + 480 629 167486 77 37 35 31 1 0 6 chain 13659 chr1 249250621 + 244741756 244741951 Tigger2b_Pri 1066 - 64 362 145750 59 0 7 29 0 7 51 4 5 39 0 88 13 chain 13851 chr1 249250621 + 244759892 244760076 L1PA8 5853 + 5672 5853 145060 10 1 0 58 2 1 19 1 0 93 chain 76417 chr1 249250621 + 244824713 244825568 L1PA5 6144 - 0 859 45252 612 0 1 142 0 3 101 chain 25120 chr1 249250621 + 244830063 244830391 THE1A 353 - 27 353 104172 128 1 0 88 1 0 110 chain 32169 chr1 249250621 + 244830391 244830768 THE1A-int 1579 - 0 380 80585 148 0 3 229 chain 3553 chr1 249250621 + 244835305 244835344 MSTB 430 + 8 47 214484 39 chain 42929 chr1 249250621 + 244845168 244845706 LTR12_ 688 - 8 688 65506 76 0 1 70 0 103 227 0 24 41 1 0 23 2 18 73 1 0 24 chain 24497 chr1 249250621 + 244853375 244853659 L1PA6 6164 - 2 285 107560 9 1 0 274 chain 4913 chr1 249250621 + 244856083 244856224 MER5A1 166 + 0 142 196140 45 67 68 29 chain 5709 chr1 249250621 + 244864271 244864343 MLT1-int 490 + 196 274 188028 49 0 6 23 chain 26871 chr1 249250621 + 244879384 244879727 L1PA8 5853 + 5506 5853 96738 58 1 0 46 2 0 68 11 17 45 2 1 18 0 2 92 chain 6960 chr1 249250621 + 244897535 244897635 MER34C_ 573 - 398 500 177751 28 1 4 4 1 0 66 chain 3003 chr1 249250621 + 244898197 244898234 LTR23 429 + 238 276 224969 13 0 1 24 chain 8194 chr1 249250621 + 244906907 244907048 LTR49-int 1717 + 119 254 169990 22 27 22 16 1 0 75 chain 3802 chr1 249250621 + 244909891 244909931 MER34C_ 573 - 495 535 210375 40 chain 25023 chr1 249250621 + 244914231 244914521 AluY 311 + 1 285 104664 125 6 0 159 chain 24522 chr1 249250621 + 244915627 244915919 AluSp 311 - 8 301 107429 21 0 1 271 chain 4067 chr1 249250621 + 244920179 244920226 MLT2A1 477 - 10 57 206384 47 chain 32685 chr1 249250621 + 244926059 244926587 L1MA2 4263 - 153 676 79713 5 1 0 47 7 0 93 21 21 28 33 33 13 0 1 68 3 0 87 0 3 49 1 0 37 0 3 35 chain 52262 chr1 249250621 + 244929793 244930648 L1M1 2793 - 1131 1981 57452 187 0 15 97 1 0 43 39 38 12 8 0 19 4 0 73 1 0 79 0 1 93 60 59 26 33 30 20 0 1 30 1 0 9 2 0 18 chain 8596 chr1 249250621 + 244936298 244936424 MSTC 436 - 311 436 167747 87 13 12 26 chain 43145 chr1 249250621 + 244937631 244938140 MER9a3 513 + 0 513 65236 18 0 2 91 0 1 323 0 1 77 chain 16982 chr1 249250621 + 244948202 244948393 L1PA5 6144 - 1 192 135640 191 chain 6383 chr1 249250621 + 244959070 244959151 MER30B 195 - 0 78 182166 39 3 0 39 chain 38265 chr1 249250621 + 244978386 244979250 MER41A 554 + 0 554 71757 86 6 7 33 324 8 44 0 1 265 5 4 21 7 12 73 chain 102515 chr1 249250621 + 244981903 244984480 MER41-int 2638 + 770 2636 36128 39 0 14 210 1103 366 90 0 3 37 17 20 69 2 1 51 1 0 105 0 1 24 0 5 6 5 0 65 3 1 33 7 5 250 13 11 58 1 2 141 0 1 41 0 10 86 34 35 86 chain 8281 chr1 249250621 + 244982157 244982584 MER41-int 2638 + 1854 1964 169509 21 2 0 35 315 0 54 chain 41730 chr1 249250621 + 244984489 244985040 MER41A 554 + 0 554 66988 26 5 5 55 16 17 294 0 1 32 0 1 123 chain 22165 chr1 249250621 + 245031448 245031722 AluSp 311 + 13 297 119519 89 0 10 185 chain 23017 chr1 249250621 + 245089957 245090236 AluSg7 307 - 23 299 115545 152 1 0 68 2 0 56 chain 22091 chr1 249250621 + 245099957 245100346 L1PA16 3655 + 3205 3587 119835 85 68 67 59 6 5 45 2 0 113 3 0 8 chain 22901 chr1 249250621 + 245101488 245101772 AluSc 308 + 10 295 116098 193 1 2 90 chain 5985 chr1 249250621 + 245120588 245120667 MADE1 96 + 0 96 185382 49 0 17 30 chain 12482 chr1 249250621 + 245129405 245129549 L1PA5 6144 + 5988 6132 150328 144 chain 6899 chr1 249250621 + 245140870 245140970 LTR9B 643 + 460 561 178199 52 3 0 5 1 0 4 0 5 35 chain 3714 chr1 249250621 + 245153850 245153903 L1MC3 1789 - 472 518 211722 6 7 0 40 chain 4152 chr1 249250621 + 245163645 245163727 MER44D 709 - 604 687 205221 34 23 24 25 chain 4079 chr1 249250621 + 245166722 245166767 MIR 256 - 143 188 206197 45 chain 6358 chr1 249250621 + 245193674 245193753 MER2B 336 + 172 251 182322 79 chain 3772 chr1 249250621 + 245220578 245220626 MADE1 96 + 1 69 210780 33 0 20 15 chain 10336 chr1 249250621 + 245299559 245299867 L1MA1 4479 - 289 579 70459 18 7 0 9 3 1 11 1 0 9 1 0 35 2 0 29 1 0 126 3 0 5 1 0 47 chain 43665 chr1 249250621 + 245299871 245300402 MER41A 554 + 0 534 64610 395 5 8 131 chain 10236 chr1 249250621 + 245300422 245300727 L1MA1 4479 - 579 879 70459 41 2 0 5 9 8 20 1 0 44 0 3 24 1 0 16 2 0 25 1 0 114 chain 25314 chr1 249250621 + 245307751 245308102 L1PA8 5853 - 10 370 103154 82 2 1 19 2 1 35 1 16 7 1 0 74 2 0 39 6 5 81 chain 3517 chr1 249250621 + 245345803 245345844 L1MB7 1623 - 203 244 215104 41 chain 24210 chr1 249250621 + 245370472 245370802 LTR10B 488 - 0 358 109156 45 0 1 4 1 0 97 3 0 96 6 37 78 chain 24285 chr1 249250621 + 245395849 245396139 AluSp 311 - 9 299 108740 290 chain 22539 chr1 249250621 + 245425756 245426056 AluSp 311 - 13 311 117853 82 11 10 74 1 0 132 chain 48326 chr1 249250621 + 245437529 245438101 L1PA7 6471 - 2 569 60224 324 13 8 235 chain 23749 chr1 249250621 + 245443533 245443852 AluY 311 + 0 302 111777 108 0 1 23 32 14 156 chain 4670 chr1 249250621 + 245443852 245443907 LTR9B 643 + 22 77 198865 55 chain 131253 chr1 249250621 + 245443907 245445320 L1PA2 6032 - 2 1416 27808 1174 0 1 239 chain 29820 chr1 249250621 + 245445320 245445641 L1PA2 6032 + 4291 4612 85372 321 chain 24172 chr1 249250621 + 245450800 245451104 AluSp 311 - 10 311 109367 19 7 4 278 chain 40775 chr1 249250621 + 245453577 245454099 MER41A 554 - 7 553 68208 74 0 5 22 1 0 4 0 1 336 4 23 81 chain 34963 chr1 249250621 + 245485259 245485689 L1PA8 5853 + 5430 5853 76243 134 1 0 36 1 0 8 2 0 74 1 0 58 2 1 19 1 0 93 chain 3954 chr1 249250621 + 245540868 245540915 MLT1C 463 - 356 403 208081 47 chain 21958 chr1 249250621 + 245590627 245590886 AluSp 311 + 0 258 120393 57 1 0 201 chain 4039 chr1 249250621 + 245637333 245637396 L1MA4 2864 - 60 122 206792 38 3 1 11 0 1 11 chain 26098 chr1 249250621 + 245666163 245666460 AluSp 311 - 12 311 99626 157 0 1 119 0 1 21 chain 23819 chr1 249250621 + 245681171 245681463 AluSg7 307 - 6 299 111372 169 0 1 123 chain 63225 chr1 249250621 + 245693055 245693873 L1MA3 4352 + 3157 3968 51351 221 5 3 107 4 0 41 1 0 439 chain 7575 chr1 249250621 + 245737212 245737308 MER44B 551 - 392 488 173698 96 chain 28794 chr1 249250621 + 245749903 245750211 AluYb8 318 + 0 305 89928 123 3 0 182 chain 411927 chr1 249250621 + 245756474 245761388 L1PA7 6471 - 1 4962 9747 4 1 0 842 0 3 145 0 1 122 1 0 161 0 1 519 0 4 146 1 3 307 0 2 393 4 3 266 0 4 468 0 15 32 0 7 124 5 9 174 8 9 5 1 0 60 2 0 65 4 12 227 1 0 172 0 5 72 6 0 41 0 1 11 0 1 372 0 1 152 chain 245932 chr1 249250621 + 245790631 245794049 L1PA8 5853 + 2518 5852 16455 104 0 18 58 0 1 132 0 4 108 3 2 22 0 1 426 253 106 15 0 13 12 0 2 100 0 1 10 0 8 78 0 4 273 0 2 109 0 2 144 0 1 36 8 9 97 1 0 213 0 3 189 1 0 163 0 4 16 4 10 70 0 2 478 1 0 46 7 5 64 1 0 14 9 8 39 2 1 19 41 40 52 chain 3586 chr1 249250621 + 245800102 245800162 L1MA5 2750 - 104 164 213878 13 1 0 16 5 6 25 chain 5478 chr1 249250621 + 245808556 245808623 MSTB 430 - 363 430 190229 67 chain 12108 chr1 249250621 + 245814942 245815203 MER1B 344 + 63 332 151767 18 56 60 13 8 9 99 16 19 51 chain 3215 chr1 249250621 + 245833151 245833187 L1PB3 3668 + 3530 3566 220655 36 chain 6566 chr1 249250621 + 245878075 245878150 L1P3 4156 + 18 93 180731 75 chain 12764 chr1 249250621 + 245886632 245886814 L1MA3 4352 + 22 198 149194 136 1 0 17 1 0 5 4 0 18 chain 228773 chr1 249250621 + 245889703 245893101 L1PA11 4918 + 1421 4504 17368 75 19 0 257 1 2 60 4 1 236 0 3 142 19 11 16 5 7 16 0 3 5 0 4 447 372 8 281 0 1 118 0 1 18 1 0 531 0 2 145 0 1 88 0 107 279 42 8 38 5 0 61 2 1 13 2 0 60 10 8 14 2 1 14 chain 172943 chr1 249250621 + 245909064 245911149 L1PA7 6471 + 4356 6461 21716 216 1 0 87 0 11 133 8 10 136 1 0 59 0 1 4 5 4 582 0 4 11 0 3 695 2 1 67 0 3 78 chain 83196 chr1 249250621 + 245937967 245939032 SVA_D 2077 + 7 2077 42253 18 4 0 11 4 0 261 1 0 155 0 3 12 0 272 12 0 117 20 6 10 47 11 627 38 7 8 58 0 3 18 4 6 359 4 0 15 chain 42921 chr1 249250621 + 245960482 245960975 L1PA5 6144 + 5637 6132 65513 178 0 1 187 0 1 128 chain 541576 chr1 249250621 + 245979841 245985854 L1PA3long 6157 + 2 6152 2578 68 0 1 81 0 1 102 0 1 108 0 1 402 11 139 944 0 3 466 1 0 30 0 2 1841 1 2 447 1 0 240 1 2 1269 chain 23926 chr1 249250621 + 246002487 246002759 AluYk4 311 - 26 300 110775 9 0 2 263 chain 54750 chr1 249250621 + 246047949 246048638 LTR12_ 688 + 0 688 55871 17 6 5 60 25 0 28 5 30 548 chain 42007 chr1 249250621 + 246050310 246050857 MER41A 554 + 0 554 66615 406 9 8 5 0 3 5 0 1 39 1 6 72 1 0 9 chain 22723 chr1 249250621 + 246069123 246069602 L1MA1 4479 + 3687 4162 116967 7 0 5 15 3 0 5 5 7 13 8 6 10 4 10 61 1 0 6 10 8 104 20 16 34 0 1 4 1 0 40 16 0 8 1 17 14 2 1 28 2 0 29 7 6 9 1 0 11 chain 55513 chr1 249250621 + 246076205 246076826 L1PA5 6144 + 5525 6144 55407 607 3 1 11 chain 4162 chr1 249250621 + 246077434 246077484 MADE1 96 + 46 96 205063 50 chain 216509 chr1 249250621 + 246105124 246108021 L1PA10 4194 + 1276 4161 18085 484 1 0 219 0 3 91 0 1 12 23 22 6 0 3 53 17 3 52 1 5 279 2 0 87 87 79 21 0 8 193 0 2 38 0 4 350 4 0 149 1 0 28 2 0 278 5 0 45 0 3 137 0 2 183 3 0 34 1 0 11 chain 6781 chr1 249250621 + 246111212 246111462 MER31A 484 + 0 240 179103 28 79 50 18 2 0 9 41 61 18 6 7 49 chain 123037 chr1 249250621 + 246133233 246134758 L1PA7 6471 + 4928 6470 30031 31 0 1 279 0 1 261 12 14 87 0 4 8 0 2 77 4 6 4 0 1 24 0 3 577 7 9 107 1 0 46 chain 6319 chr1 249250621 + 246191335 246191410 L1MA5 2750 + 97 172 182644 75 chain 151411 chr1 249250621 + 246208192 246209919 L1PA5 6144 + 4391 6126 24409 686 0 1 193 1 5 18 1 4 828 chain 5597 chr1 249250621 + 246242329 246242398 MER41B 635 - 81 154 189119 45 0 4 24 chain 82387 chr1 249250621 + 246245986 246246938 LTR5_Hs 974 + 0 974 42592 285 0 1 546 0 22 57 1 0 63 chain 25786 chr1 249250621 + 246251645 246251925 AluY 311 + 16 296 100926 280 chain 21037 chr1 249250621 + 246277965 246278231 AluSc 308 - 43 308 123775 99 1 0 166 chain 18337 chr1 249250621 + 246327503 246327723 AluSx1 309 + 63 284 131970 70 2 0 27 0 3 121 chain 9357 chr1 249250621 + 246331112 246331227 L1MB5 1630 - 706 821 163768 115 chain 3217 chr1 249250621 + 246335701 246335740 Tigger3b 1229 - 405 444 220624 39 chain 294619 chr1 249250621 + 246402413 246405807 L1PA5 6144 - 12 3416 13725 383 0 7 365 0 1 1694 1 0 179 0 1 256 0 3 72 0 1 6 2 0 436 chain 57034 chr1 249250621 + 246405808 246406484 L1PA5 6144 + 2038 2709 54514 202 7 5 68 2 1 132 2 0 263 chain 27575 chr1 249250621 + 246419343 246419718 MLT2A1 477 - 92 477 94419 52 0 4 123 0 1 6 6 5 21 6 10 22 3 5 136 chain 41114 chr1 249250621 + 246431351 246432204 MER41A 554 + 0 528 67756 172 0 3 196 332 4 153 chain 22850 chr1 249250621 + 246448282 246448704 L1PB1 5432 - 5 393 116343 5 2 0 18 1 0 13 1 0 21 2 1 23 2 0 15 7 4 19 18 8 5 1 0 15 1 0 43 1 0 16 2 1 52 2 0 9 2 0 3 2 0 9 1 0 12 1 0 20 5 0 8 1 4 64 chain 57793 chr1 249250621 + 246448737 246449480 L1PB1 5432 + 4259 5010 54088 16 0 2 85 15 13 253 0 1 58 0 2 115 4 3 119 0 1 11 0 5 67 chain 66123 chr1 249250621 + 246492316 246493041 L1PA3long 6157 - 322 1047 50040 725 chain 22883 chr1 249250621 + 246496136 246498204 Tigger1 2417 + 867 1871 116176 56 25 28 88 0 3 22 17 26 76 1678 599 106 chain 16965 chr1 249250621 + 246511114 246511434 L1PA16 3655 + 3124 3434 135685 50 0 1 11 15 20 80 25 23 64 35 21 40 chain 38171 chr1 249250621 + 246520410 246520899 MER41A 554 + 13 499 71884 213 8 1 178 0 4 90 chain 310765 chr1 249250621 + 246520927 246525236 L1PB1 5432 + 1113 5422 12972 108 1 2 15 3 8 133 17 22 9 1 0 261 0 3 828 4 0 28 0 2 102 0 3 165 46 43 156 14 14 27 0 1 117 9 12 315 1 0 5 13 16 16 8 4 54 0 1 141 21 14 30 0 1 28 0 16 149 6 5 154 0 7 500 5 6 178 1 0 91 0 2 8 0 1 54 1 0 44 6 8 83 1 2 9 5 0 24 1 0 4 3 2 13 17 11 52 2 1 16 1 0 44 1 0 15 13 1 8 0 1 20 3 1 5 1 0 14 13 11 13 1 0 22 1 0 12 1 0 18 chain 135889 chr1 249250621 + 246525726 246527227 SVA_D 2077 + 0 2066 26862 13 4 0 21 0 2 261 1 0 287 0 40 63 0 40 190 1 0 3 0 490 356 1 0 300 chain 29991 chr1 249250621 + 246541563 246541956 MLT2A1 477 + 0 399 84835 44 0 9 116 4 1 8 0 1 24 0 1 39 5 7 135 4 0 14 chain 194161 chr1 249250621 + 246572297 246574482 L1PA4 6152 - 813 3015 19660 32 0 6 217 0 1 750 0 4 40 0 2 586 1 2 405 0 3 154 chain 72104 chr1 249250621 + 246574482 246575279 L1PA4 6152 + 5346 6143 47342 797 chain 33711 chr1 249250621 + 246582127 246582650 LTR7B 505 + 0 495 78075 204 34 0 12 5 0 11 1 56 40 7 8 31 45 0 133 chain 4381 chr1 249250621 + 246589041 246589092 LTR16C 481 + 392 443 202191 51 chain 29546 chr1 249250621 + 246596257 246596687 L1PA16 3655 + 1726 2165 86432 65 0 2 132 0 3 34 45 49 154 chain 9100 chr1 249250621 + 246601806 246601952 MER2 342 - 23 149 165068 16 18 0 5 2 0 105 chain 6860 chr1 249250621 + 246622879 246622975 MSTA 426 + 275 392 178498 18 3 24 75 chain 6230 chr1 249250621 + 246628276 246628353 HY3 101 + 19 96 183317 77 chain 48128 chr1 249250621 + 246678787 246679412 LTR10E 629 - 6 629 60383 55 2 0 273 2 1 83 14 13 32 0 2 164 chain 3570 chr1 249250621 + 246688537 246688595 MER2 342 + 93 152 214127 22 9 10 27 chain 95510 chr1 249250621 + 246688638 246689699 L1PA4 6152 + 5088 6152 37954 729 0 1 74 0 1 145 0 1 113 chain 6736 chr1 249250621 + 246705202 246705476 Tigger3a 397 - 0 343 179429 18 140 139 64 0 25 9 23 68 20 chain 84206 chr1 249250621 + 246752434 246753367 L1PA4 6152 - 16 950 41816 132 0 1 801 chain 32782 chr1 249250621 + 246753372 246753816 LTR2C 499 - 24 491 79558 8 0 9 17 1 3 381 1 0 5 12 25 19 chain 16690 chr1 249250621 + 246786523 246786756 MER75B 242 - 7 242 136436 18 3 1 13 11 15 188 chain 34251 chr1 249250621 + 246791155 246791615 MLT2A1 477 - 0 477 77280 20 1 0 34 3 0 19 3 19 212 1 5 27 11 12 129 chain 15482 chr1 249250621 + 246802563 246802933 HERVH48-int 3304 - 157 489 139959 61 63 47 61 8 6 4 1 0 44 1 0 7 1 0 4 8 7 11 1 0 9 13 5 21 24 17 28 chain 24574 chr1 249250621 + 246809304 246809596 AluY 311 + 5 297 107111 118 4 2 6 0 2 164 chain 21315 chr1 249250621 + 246849868 246850193 LTR7B 505 + 0 476 122821 105 0 10 53 8 110 11 2 1 21 0 41 55 0 1 5 1 0 28 14 13 22 chain 75099 chr1 249250621 + 246857181 246858223 MER11A 1151 + 0 1151 45968 55 0 99 74 1 0 64 8 4 31 0 2 11 1 0 127 0 23 46 1 2 94 8 6 46 5 6 145 23 7 78 0 1 46 1 0 16 0 1 23 0 6 138 chain 61542 chr1 249250621 + 246873889 246874746 LTR12 884 + 0 884 52093 90 0 132 152 5 3 273 103 0 234 chain 7140 chr1 249250621 + 246874746 246874831 MSTB 430 - 342 427 176468 85 chain 3267 chr1 249250621 + 246875424 246875461 MER67A 545 - 508 545 219649 37 chain 62698 chr1 249250621 + 246875561 246876415 LTR12 884 + 0 882 51591 138 36 24 19 0 25 151 0 2 19 2 0 92 10 26 112 1 0 274 chain 2020 chr1 249250621 + 246875711 246875735 LTR12 884 + 31 55 138140 24 chain 508047 chr1 249250621 + 246877649 246884722 L1PA4 6152 + 381 6143 6314 57 0 1 83 234 1 1300 1 0 1314 0 1 784 0 1 1785 1080 0 16 2 3 90 1 0 326 chain 20554 chr1 249250621 + 246877789 246878020 L1P1 4361 - 2669 2900 124241 231 chain 79317 chr1 249250621 + 246883213 246884273 MER11C 1089 + 0 1073 43899 246 0 9 62 0 4 65 1 0 146 49 46 12 11 10 90 1 5 4 1 0 38 0 1 127 0 1 50 1 0 148 0 1 8 chain 32530 chr1 249250621 + 246895029 246895414 L1PA6 6164 - 5 396 79975 6 0 6 379 chain 33347 chr1 249250621 + 246909069 246909843 LTR2 463 - 0 463 78658 59 337 20 229 0 5 6 17 15 71 0 3 55 chain 45231 chr1 249250621 + 246913713 246914423 HERVIP10F-int 4088 - 941 1623 62793 9 2 1 9 1 0 21 67 44 57 1 0 4 37 35 502 chain 15974 chr1 249250621 + 246917801 246917991 LTR2 463 - 0 190 138433 190 chain 29564 chr1 249250621 + 246976515 246976898 LTR7 482 + 4 470 86358 97 0 50 73 5 37 46 0 1 162 chain 3066 chr1 249250621 + 247000001 247000040 L1MB8 1703 + 1490 1534 223636 27 0 5 12 chain 26239 chr1 249250621 + 247027893 247028178 AluYb8 318 + 38 318 99056 88 5 0 192 chain 8835 chr1 249250621 + 247032451 247032783 Tigger1 2417 + 49 637 166466 4 0 1 6 2 0 64 156 349 16 10 71 25 8 11 41 chain 24855 chr1 249250621 + 247090193 247090492 AluY 311 + 0 295 105593 8 1 0 119 3 0 168 chain 3088 chr1 249250621 + 247091337 247091370 AluY 311 + 0 33 223127 33 chain 21500 chr1 249250621 + 247091378 247091625 AluY 311 + 57 303 122144 76 1 0 170 chain 4664 chr1 249250621 + 247118163 247118221 Tigger3a 397 - 74 132 198921 58 chain 76044 chr1 249250621 + 247134219 247135161 LTR13_ 950 - 0 950 45451 279 1 3 25 0 4 46 1 3 244 1 0 149 1 2 195 chain 3608 chr1 249250621 + 247140258 247140301 MSTA 426 - 376 419 213503 43 chain 4286 chr1 249250621 + 247159940 247160033 L1MA3 4352 + 4266 4352 203395 16 2 1 5 1 0 29 1 0 11 1 0 5 5 2 17 chain 23866 chr1 249250621 + 247172925 247173199 AluSq10 312 - 27 301 111105 274 chain 73948 chr1 249250621 + 247179084 247180044 LTR5_Hs 974 - 0 974 46542 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 181 0 1 157 5 13 115 chain 90742 chr1 249250621 + 247181356 247182447 L1P3 4156 + 3054 4139 39378 429 1 0 17 1 0 42 14 12 35 0 1 517 2 0 6 3 2 24 chain 41587 chr1 249250621 + 247187962 247188451 MER9a1 513 + 0 513 67176 24 0 23 369 0 1 96 chain 317177 chr1 249250621 + 247189249 247192964 HERVK9-int 4720 + 54 4720 12717 4 1 0 21 0 1 44 1 0 9 1 0 29 1 0 842 0 24 120 0 5 40 1 2 5 1 0 296 0 924 44 2 1 4 0 1 236 1 0 933 1 0 291 0 2 203 0 1 584 chain 44285 chr1 249250621 + 247192964 247193476 MER9a1 513 + 0 513 63841 416 0 1 96 chain 122722 chr1 249250621 + 247194848 247196269 SVA_D 2077 + 16 1740 30153 896 0 86 34 0 3 13 0 1 28 24 231 35 0 1 7 0 1 36 0 1 4 6 7 44 0 1 4 0 1 290 chain 98152 chr1 249250621 + 247212667 247214327 L1PBa 3878 - 1035 2362 37237 415 7 3 305 0 3 70 0 1 186 7 1 100 1 0 6 309 0 44 2 1 65 9 6 15 1 0 8 10 0 66 10 8 24 chain 22391 chr1 249250621 + 247224485 247224750 AluSg7 307 - 11 288 118531 165 1 0 66 0 13 33 chain 11786 chr1 249250621 + 247230791 247231338 L1MA1 4479 + 3970 4184 153104 63 320 3 42 4 2 25 11 9 28 1 0 9 1 0 5 3 0 16 7 0 12 chain 34746 chr1 249250621 + 247245350 247245775 L1PA7 6471 - 5 428 76549 119 4 0 31 0 1 183 0 1 88 chain 9200 chr1 249250621 + 247246923 247247076 L1PREC2 3366 + 2722 2867 164558 25 1 0 5 2 0 43 12 11 44 1 0 5 3 0 12 chain 22322 chr1 249250621 + 247256493 247256798 HSMAR1 1287 + 11 340 118816 105 8 9 8 0 1 16 0 18 95 0 3 19 0 1 54 chain 7915 chr1 249250621 + 247268007 247268105 LTR8 732 - 16 114 171552 98 chain 21665 chr1 249250621 + 247268815 247269138 MER4A1 472 - 135 469 121524 61 25 12 19 0 21 113 0 1 85 9 11 11 chain 5184 chr1 249250621 + 247269148 247269213 MER4-int 2692 - 0 66 193204 6 0 1 59 chain 41963 chr1 249250621 + 247273925 247274482 LTR14C 587 + 0 587 66669 118 1 26 13 6 7 340 6 10 73 chain 37821 chr1 249250621 + 247290750 247291211 LTR2 463 + 0 463 72382 129 17 15 6 0 5 207 1 0 101 chain 453828 chr1 249250621 + 247294420 247301855 L1PA8A 6298 + 39 6267 8621 19 32 21 18 3 0 20 30 0 8 49 67 12 7 4 13 1 0 8 1 0 7 1 0 5 3 2 14 5 1 7 1 0 43 1 0 20 8 2 32 0 1 30 1 2 11 3 1 18 13 10 134 14 23 434 1 2 113 10 8 32 7 8 247 461 0 166 39 1 382 0 2 31 319 0 97 0 4 636 0 4 63 0 1 144 1 5 255 0 47 51 16 21 20 1 0 47 0 4 24 1 8 42 1 0 57 0 1 50 5 12 267 0 1 144 0 2 273 0 17 34 0 3 31 0 10 136 0 3 168 0 1 127 0 1 6 1 0 4 308 0 323 0 7 61 166 0 43 0 3 218 5 6 120 0 3 347 44 28 68 0 4 80 0 1 116 chain 34605 chr1 249250621 + 247295858 247296315 LTR2 463 + 0 463 76750 58 0 4 274 0 1 22 37 39 9 1 0 56 chain 21587 chr1 249250621 + 247316189 247316448 AluSc8 310 + 36 298 121821 96 0 3 163 chain 40619 chr1 249250621 + 247330933 247331548 L1PB2 3958 + 3133 3746 68407 64 0 1 111 2 0 49 0 3 17 1 4 5 1 0 26 0 4 22 2 0 5 9 7 18 0 4 66 2 0 5 1 3 15 14 6 42 8 7 64 2 1 64 chain 37459 chr1 249250621 + 247333835 247334295 LTR2 463 - 0 463 72876 308 0 5 6 17 15 129 chain 23787 chr1 249250621 + 247345156 247345438 AluSp 311 - 19 300 111549 168 1 0 113 chain 22161 chr1 249250621 + 247361692 247361981 THE1A 353 + 0 325 119542 110 1 0 104 0 39 22 5 3 47 chain 37563 chr1 249250621 + 247381472 247381929 LTR71A 459 + 0 459 72736 32 0 2 425 chain 116221 chr1 249250621 + 247383255 247384559 SVA_D 2077 + 7 2073 32367 18 4 0 11 4 0 261 1 0 234 0 196 111 0 575 660 chain 118314 chr1 249250621 + 247386453 247388121 L1PA10 4194 + 819 2528 31684 18 0 3 46 12 15 35 29 30 276 0 9 137 3 6 103 8 0 7 13 21 158 3 4 130 7 13 27 0 7 11 0 3 227 5 6 28 8 6 124 0 6 253 chain 9584 chr1 249250621 + 247390263 247390376 L1PA6 6164 + 6043 6156 162671 113 chain 4068 chr1 249250621 + 247391400 247391446 L1PREC2 3366 + 2551 2597 206379 46 chain 90131 chr1 249250621 + 247392768 247396482 L1PB1 5432 + 3998 5422 39600 352 2316 31 126 0 4 88 0 9 15 10 7 33 0 7 377 1 0 4 0 14 5 1 0 33 13 11 12 1 0 10 1 0 10 1 0 10 18 12 52 2 1 15 1 0 45 1 0 11 72 55 23 1 0 21 1 0 13 1 0 18 chain 5541 chr1 249250621 + 247397976 247398057 L1MA4A 3247 + 3036 3116 189655 59 0 1 5 1 0 5 1 0 10 chain 187433 chr1 249250621 + 247402627 247404694 L1PA5 6144 + 4066 6139 20299 1192 0 1 35 0 5 840 chain 25835 chr1 249250621 + 247411338 247411634 L1PA3long 6157 + 5861 6157 100728 296 chain 16670 chr1 249250621 + 247411680 247412070 L1MA2 4263 - 205 610 136484 80 121 138 34 6 4 22 9 10 44 0 1 4 1 0 59 1 0 9 chain 48565 chr1 249250621 + 247429222 247429802 LTR14C 587 + 0 581 60065 12 0 2 284 1 0 283 chain 15148 chr1 249250621 + 247431615 247431920 L1M1 2793 - 1776 2064 140918 14 1 0 101 7 10 6 6 0 47 1 0 5 7 5 17 11 10 26 3 1 9 4 1 20 2 0 5 2 0 11 chain 93973 chr1 249250621 + 247433701 247434864 L1PA8A 6298 - 7 1188 38357 220 3 1 338 0 3 81 3 7 67 0 5 79 2 1 13 0 4 123 0 5 234 chain 22663 chr1 249250621 + 247445650 247445938 AluY 311 + 8 294 117250 22 1 4 97 7 1 30 0 1 131 chain 11222 chr1 249250621 + 247447271 247447434 THE1D 372 - 0 168 155341 32 1 0 94 8 14 28 chain 171578 chr1 249250621 + 247450198 247452882 HERVH48-int 3304 + 118 2706 21872 8 2 0 8 8 4 5 2 0 12 3 0 8 3 0 9 2 0 10 13 10 7 2 0 57 13 0 21 1 0 9 11 6 4 1 0 64 8 4 5 1 0 24 8 0 48 1 0 7 2 4 11 15 10 79 1 0 6 14 12 43 31 33 17 1 0 4 3 1 19 13 11 35 2 0 42 1 0 101 11 17 114 5 4 5 0 1 5 1 0 20 1 0 14 2 0 32 3 0 3 2 0 22 2 0 4 1 0 17 1 0 18 2 0 27 7 6 10 24 15 122 1 0 12 1 0 8 1 0 74 0 1 142 2 1 89 1 0 141 1 0 13 1 6 118 0 1 108 1 2 43 0 4 89 17 16 15 2 0 66 1 0 12 9 8 40 1 0 229 12 10 12 1 0 44 4 2 13 2 1 30 2 0 17 2 0 7 chain 11261 chr1 249250621 + 247489966 247490131 MLT1B 390 + 27 189 155188 26 4 3 18 2 0 115 chain 8099 chr1 249250621 + 247509996 247510132 Tigger4b 360 + 225 360 170494 78 24 23 34 chain 15507 chr1 249250621 + 247516819 247517007 LTR71A 459 + 0 188 139872 188 chain 36591 chr1 249250621 + 247523417 247523874 LTR71A 459 + 1 459 74109 200 0 1 257 chain 27446 chr1 249250621 + 247528306 247528661 THE1A 353 + 0 353 94829 103 1 0 6 2 1 125 1 0 5 0 1 112 chain 125485 chr1 249250621 + 247528661 247530483 THE1A-int 1579 + 0 1579 29249 91 0 10 14 0 1 136 265 8 278 2 0 108 0 1 83 7 22 31 10 0 479 1 0 317 chain 25429 chr1 249250621 + 247530483 247530810 THE1A 353 + 0 325 102548 109 2 1 155 1 0 60 chain 50066 chr1 249250621 + 247532145 247532734 LTR10C 591 - 0 591 58970 81 5 7 503 chain 24252 chr1 249250621 + 247533013 247533300 AluSc5 308 - 12 299 108933 287 chain 21020 chr1 249250621 + 247533943 247534292 LTR23 429 - 15 382 123846 28 1 3 26 16 15 63 5 7 150 11 0 8 5 31 36 chain 45939 chr1 249250621 + 247540822 247541374 MER41A 554 - 0 554 62093 511 0 2 41 chain 19795 chr1 249250621 + 247544406 247545212 HUERS-P1-int 2401 - 262 877 127835 15 2 0 47 1 0 7 1 0 9 1 0 4 15 6 10 1 0 3 1 0 25 34 11 13 5 0 13 1 0 38 2 1 10 237 135 17 9 0 14 26 23 14 3 0 5 44 26 4 1 0 18 13 9 10 2 0 63 2 0 53 1 0 12 chain 9001 chr1 249250621 + 247551776 247551888 LTR8 732 - 574 686 165589 112 chain 8655 chr1 249250621 + 247595615 247595770 L1PB4 2604 - 70 226 167447 42 1 3 47 22 23 34 2 0 7 chain 25576 chr1 249250621 + 247613287 247613585 AluSg7 307 - 6 305 101843 169 0 1 129 chain 14675 chr1 249250621 + 247613586 247613769 L1PB1 5432 - 371 557 142343 151 0 3 32 chain 17486 chr1 249250621 + 247619913 247620152 L1PA7 6471 - 1 244 134297 12 1 0 142 11 12 63 0 4 10 chain 41724 chr1 249250621 + 247639458 247639957 LTR2B 499 - 0 499 66995 180 1 0 10 0 1 237 1 0 56 0 1 14 chain 6388 chr1 249250621 + 247642123 247642203 L1PB4 2604 - 56 137 182112 26 0 1 54 chain 18409 chr1 249250621 + 247664467 247664708 Tigger3c 601 - 64 314 131753 166 1 11 41 1 0 32 chain 509250 chr1 249250621 + 247670833 247677273 L1PA7 6471 - 8 6471 6225 204 5 12 115 0 1 462 1 0 41 6 7 63 0 4 118 1 0 163 0 1 50 3 4 53 20 29 4 1 0 19 4 26 10 38 16 82 1 0 80 5 1 36 0 1 258 0 1 114 3 7 833 3 0 119 0 1 72 0 5 177 0 2 34 0 1 332 0 2 10 0 4 35 27 0 146 0 4 302 13 11 78 1 12 274 0 1 281 1 0 471 0 1 214 7 8 158 8 10 268 0 2 200 1 0 6 1 3 140 5 4 56 4 1 203 chain 7747 chr1 249250621 + 247678204 247678424 L1PB 1623 - 48 234 172617 22 80 52 13 3 0 4 1 0 30 2 1 7 1 0 57 chain 15460 chr1 249250621 + 247678827 247679155 MSTA 426 - 21 417 140019 89 3 24 29 38 36 10 2 12 68 51 90 38 chain 137419 chr1 249250621 + 247684653 247686235 SVA_C 1631 + 0 1631 26572 12 4 12 11 4 0 142 10 11 663 0 46 106 0 1 295 0 1 314 4 0 17 chain 11856 chr1 249250621 + 247691018 247691305 L1MA5A 2387 - 12 246 152808 13 8 6 16 1 0 10 1 0 15 30 15 4 1 0 64 29 0 15 3 0 12 0 3 15 2 0 32 2 0 14 chain 456769 chr1 249250621 + 247730475 247736307 L1PA8 5853 - 0 5803 8520 93 1 0 15 2 1 52 1 0 13 1 0 71 2 0 46 1 0 384 0 1 90 1 0 78 0 2 667 2 0 178 0 1 63 31 0 39 0 2 856 1 0 74 0 1 163 0 1 54 1 0 128 0 1 4 1 0 267 1 0 461 8 16 253 0 1 418 0 1 27 1 0 4 0 1 132 2 0 299 11 14 417 1 0 4 0 1 127 10 10 13 0 4 20 8 4 41 10 48 84 59 20 6 1 0 10 2 0 22 chain 155895 chr1 249250621 + 247744150 247747473 L1PBa 3878 + 1380 3528 23870 66 7 6 33 0 15 114 8 9 269 226 30 114 0 3 318 995 1 102 1 0 141 0 1 65 4 5 37 3 0 251 0 1 82 3 5 54 0 3 115 3 0 54 20 16 238 chain 62845 chr1 249250621 + 247750580 247751297 L1PA4 6152 - 0 715 51516 5 3 0 671 1 2 37 chain 228369 chr1 249250621 + 247755433 247758580 L1PA8 5853 - 0 2874 17397 93 1 0 17 2 1 49 1 0 14 1 0 71 2 0 44 1 0 19 0 5 347 307 0 142 0 35 6 2 0 22 0 4 349 1 0 290 6 5 20 0 1 446 1 0 5 0 1 68 0 1 815 1 0 4 chain 40912 chr1 249250621 + 247765604 247766089 L1PA6 6164 + 5666 6161 68019 64 0 10 41 0 1 7 1 0 372 chain 43750 chr1 249250621 + 247766844 247767563 L1PB3 3668 - 48 742 64506 6 1 0 15 7 4 66 3 1 9 54 43 85 3 0 7 0 2 83 11 10 193 16 15 77 2 0 17 2 0 56 1 0 5 chain 25342 chr1 249250621 + 247770707 247771017 AluY 311 + 5 311 103002 118 0 3 4 8 0 110 0 1 70 chain 106032 chr1 249250621 + 247771445 247773000 L1MA1 4479 + 1326 2882 35249 70 1 0 40 4 0 239 4 5 368 0 1 39 12 24 63 0 1 28 1 4 114 7 5 21 3 0 5 0 3 75 12 11 159 8 7 16 5 6 18 0 1 18 2 1 23 10 6 71 12 10 19 11 9 60 1 0 16 chain 26502 chr1 249250621 + 247773000 247773369 L1PA8 5853 + 5491 5853 98034 73 1 0 46 2 0 72 1 0 8 13 11 39 2 1 19 1 0 26 0 1 66 chain 360400 chr1 249250621 + 247793980 247798607 L1P2 5180 - 2 4623 11353 4 1 0 39 1 0 46 1 0 92 9 8 348 7 0 366 1 0 238 0 3 227 1 2 98 12 13 402 7 8 24 0 4 328 0 8 566 41 28 205 0 1 948 0 1 23 8 10 89 1 0 4 4 5 236 3 18 46 22 1 174 0 3 5 chain 49000 chr1 249250621 + 247817420 247817979 L1PA5 6144 - 3 558 59750 13 3 0 323 1 0 219 chain 107913 chr1 249250621 + 247824110 247825432 L1PA7 6471 - 1 1341 34745 114 0 1 147 0 1 23 0 3 321 0 4 80 7 6 68 0 2 79 3 2 41 0 1 223 1 0 122 0 4 17 3 8 73 chain 567840 chr1 249250621 + 247850475 247856506 L1HS 6032 + 1 6032 35 6031 chain 148084 chr1 249250621 + 247858036 247859670 L1PA3long 6157 - 0 1636 24865 155 1 0 176 0 3 1302 chain 29787 chr1 249250621 + 247868323 247868764 MLT2A1 477 - 0 477 85524 6 0 4 38 4 32 9 4 0 5 1 0 168 5 9 33 1 5 17 12 13 138 chain 375901 chr1 249250621 + 247868764 247873357 HERVL-int 5654 - 0 4890 10888 1132 0 1 413 7 3 532 2 1 16 0 1 45 0 4 311 1 0 250 0 3 61 2 1 63 5 0 70 1 2 349 0 20 135 0 1 94 9 20 66 0 1 272 1 254 362 0 12 160 0 1 234 chain 22129 chr1 249250621 + 247873358 247873629 MLT2A1 477 - 201 477 119669 103 1 5 27 0 1 140 chain 177021 chr1 249250621 + 247888848 247890751 L1PA2 6032 - 16 1919 21249 1903 chain 112541 chr1 249250621 + 247890751 247891972 L1PA2 6032 + 2892 4113 33520 1221 chain 3789 chr1 249250621 + 247906672 247906716 L1P4e 1373 + 855 899 210529 44 chain 79143 chr1 249250621 + 247916474 247917362 L1PA4 6152 - 1 892 43980 114 0 3 30 0 1 625 1 0 118 chain 36705 chr1 249250621 + 247917362 247917764 L1PA4 6152 + 4869 5270 73535 178 1 0 223 chain 61794 chr1 249250621 + 247931923 247932783 L1PB1 5432 + 4362 5216 51997 251 5 8 82 0 2 398 1 2 12 4 1 9 9 7 13 1 0 10 6 2 9 2 0 48 chain 64586 chr1 249250621 + 247941554 247942302 L1PA5 6144 - 0 761 50756 332 0 1 226 9 21 181 chain 45312 chr1 249250621 + 247942302 247942824 L1PA5 6144 + 4866 5385 62596 110 1 0 135 0 1 47 3 0 226 chain 57816 chr1 249250621 + 247963700 247964327 L1PA3long 6157 - 1860 2488 54033 352 0 1 275 chain 165696 chr1 249250621 + 247964327 247966169 L1PA3long 6157 + 4304 6157 22552 229 0 7 770 0 4 843 chain 51490 chr1 249250621 + 247967769 247968386 L1PA7 6471 - 18 638 57975 337 0 1 157 0 1 78 0 1 45 chain 218357 chr1 249250621 + 247972188 247974564 L1PA3long 6157 - 0 2377 17980 2212 0 1 164 chain 34216 chr1 249250621 + 247974743 247975129 L1PA3long 6157 - 1 387 77331 386 chain 11732 chr1 249250621 + 247985438 247985974 MLT2B3 573 + 7 525 153339 18 1 0 94 209 177 23 46 56 21 78 85 18 1 0 22 1 0 4 chain 555159 chr1 249250621 + 248051624 248057640 L1PA2 6032 - 2 6023 807 850 0 4 2885 0 1 2281 chain 35779 chr1 249250621 + 248061644 248062085 LTR2 463 - 12 463 75163 76 12 13 115 0 9 238 chain 422370 chr1 249250621 + 248062085 248067175 Harlequin-int 5206 - 0 5074 9479 8 0 1 107 0 1 172 0 2 719 15 10 10 0 5 489 6 0 480 0 1 653 6 8 1073 0 1 167 3 7 68 2 0 23 0 1 25 0 1 167 8 4 284 2 0 4 0 4 229 2 0 10 1 0 36 0 3 28 0 5 24 4 0 76 0 1 5 20 0 134 12 11 4 1 0 13 chain 38264 chr1 249250621 + 248068736 248069197 LTR2 463 - 0 463 71758 7 0 1 80 12 13 362 chain 38465 chr1 249250621 + 248072971 248073416 L1P1 4361 - 20 462 71495 12 2 1 23 1 0 155 1 0 251 chain 3704 chr1 249250621 + 248077242 248077284 MADE1 96 + 52 94 211884 42 chain 533006 chr1 249250621 + 248118266 248124389 L1PA4 6152 - 15 6152 3850 753 3 8 67 1 5 46 3 0 1317 1 2 49 1 2 340 0 1 381 0 1 1921 0 1 99 0 2 666 2 1 137 0 1 27 8 9 301 chain 93737 chr1 249250621 + 248131651 248132714 L1PA6 6164 - 2 1066 38426 924 0 1 139 chain 6447 chr1 249250621 + 248133576 248133650 L1PA3long 6157 + 6083 6157 181661 74 chain 210439 chr1 249250621 + 248134962 248137728 L1PA8 5853 + 2233 5850 18472 655 1 0 46 12 18 257 15 4 577 3 2 375 0 850 547 1 0 11 1 0 32 0 6 66 9 13 8 2 0 40 2 1 15 16 15 32 3 7 40 chain 38646 chr1 249250621 + 248142475 248142940 L1PA6 6164 - 8 474 71229 73 0 1 392 chain 152410 chr1 249250621 + 248148419 248150172 L1PA4 6152 - 14 1759 24293 136 7 0 110 1 0 74 1 2 521 0 1 224 2 0 677 chain 7421 chr1 249250621 + 248160301 248160395 HY3 101 + 0 99 174645 29 0 4 35 0 1 30 chain 5980 chr1 249250621 + 248165772 248165845 L1MB2 1706 - 216 289 185421 73 chain 10965 chr1 249250621 + 248166191 248166355 L1P3 4156 - 229 392 156340 68 6 7 23 2 0 65 chain 100969 chr1 249250621 + 248171851 248173131 L1P3 4156 + 2816 4116 36517 642 0 11 77 0 4 392 0 7 142 1 0 4 0 1 11 2 0 9 chain 103056 chr1 249250621 + 248173591 248174939 L1P2 5180 - 2389 3714 35974 21 0 1 39 2 0 5 21 22 369 33 7 483 0 3 62 4 3 59 0 1 250 chain 21488 chr1 249250621 + 248183457 248183745 L1PB 1623 + 969 1260 122186 186 1 0 4 0 1 11 0 1 6 1 0 49 0 3 30 chain 9438 chr1 249250621 + 248187388 248187519 L1PA8 5853 - 27 156 163370 66 1 0 19 3 2 42 chain 45939 chr1 249250621 + 248187806 248188313 L1PA3long 6157 - 1097 1604 61928 507 chain 99886 chr1 249250621 + 248188313 248189410 L1PA3long 6157 + 5059 6157 36813 966 0 1 131 chain 84809 chr1 249250621 + 248189887 248190957 MER11C 1089 + 0 1074 41591 17 0 1 515 65 66 321 7 8 69 0 1 76 chain 25230 chr1 249250621 + 248191177 248191471 AluY 311 + 17 311 103585 294 chain 8225 chr1 249250621 + 248192421 248192520 HY3 101 + 0 99 169805 99 chain 125378 chr1 249250621 + 248204424 248205816 L1PA3long 6157 + 4759 6157 29285 764 0 5 624 0 1 4 chain 39520 chr1 249250621 + 248206916 248207486 MER41C 542 - 2 542 69997 118 0 1 57 0 1 46 3 5 210 46 10 44 0 2 46 chain 8262 chr1 249250621 + 248209089 248209188 HY3 101 + 0 99 169611 99 chain 551658 chr1 249250621 + 248230814 248236938 L1PA3long 6157 + 6 6157 1230 1005 0 19 127 0 5 3769 3 4 343 0 1 28 0 1 849 chain 229389 chr1 249250621 + 248238178 248240903 L1PA6 6164 - 3 2760 17330 9 3 0 13 0 1 116 8 0 10 7 15 245 0 20 560 0 5 229 0 1 16 0 1 246 0 1 307 0 4 295 4 5 542 0 2 66 2 1 47 chain 44606 chr1 249250621 + 248243591 248244198 L1PA7 6471 - 12 622 63472 35 7 5 97 16 17 187 5 6 84 0 2 138 0 1 38 chain 45579 chr1 249250621 + 248245311 248245813 L1PA2 6032 + 5536 6032 62432 354 6 0 142 chain 24664 chr1 249250621 + 248259408 248259698 AluY 311 + 10 296 106642 120 4 0 166 chain 244049 chr1 249250621 + 248268243 248272120 L1PA8 5853 - 6 3251 16558 78 16 15 12 1 0 44 20 19 56 0 2 11 2 0 38 12 11 94 642 0 455 5 6 215 0 1 102 2 0 8 8 10 93 0 1 158 0 1 83 1 0 149 0 1 125 0 2 101 0 1 320 1 15 104 0 1 116 1 0 4 0 1 174 20 5 31 0 2 243 1 5 46 0 1 285 chain 49423 chr1 249250621 + 248268632 248269261 LTR14B 630 - 0 630 59440 118 21 22 490 chain 342814 chr1 249250621 + 248281117 248284960 L1PA3long 6157 - 0 6151 11814 1067 0 1 1797 1 0 29 0 2 569 1 2 231 8 2299 22 0 14 118 chain 16450 chr1 249250621 + 248299726 248299909 L1PA4 6152 - 0 183 137062 183 chain 13115 chr1 249250621 + 248317278 248317433 L1PA6 6164 - 3 158 147785 155 chain 173187 chr1 249250621 + 248320202 248322147 L1PA5 6144 - 14 1948 21694 324 0 1 764 12 0 81 1 0 580 0 1 183 chain 17191 chr1 249250621 + 248325822 248326051 L1PA7 6471 + 6230 6455 135057 133 8 4 88 chain 3162 chr1 249250621 + 248326894 248326960 MER53 195 + 123 169 221706 9 19 0 5 1 0 32 chain 557983 chr1 249250621 + 248329861 248335891 L1PA2 6032 - 0 6032 502 145 0 1 5668 0 1 217 chain 32142 chr1 249250621 + 248364749 248365100 L1PA3long 6157 - 0 351 80626 351 chain 31967 chr1 249250621 + 248373738 248374223 LTR7B 505 + 0 495 80907 108 0 10 57 0 38 12 34 27 28 29 0 85 1 0 76 14 13 41 chain 93428 chr1 249250621 + 248377828 248378970 L1PA7 6471 + 5311 6464 38527 38 0 1 272 0 10 786 0 9 6 9 0 31 chain 106100 chr1 249250621 + 248382519 248383897 L1P3 4156 - 298 1679 35232 115 0 1 4 0 1 6 3 1 232 1 0 15 0 2 32 0 5 53 4 0 311 1 0 326 0 1 83 2 1 36 2 4 152 chain 65556 chr1 249250621 + 248384404 248385127 L1PA2 6032 + 5324 6032 50310 697 15 0 11 chain 44871 chr1 249250621 + 248398740 248399363 L1PA10 4194 - 33 661 63207 11 1 0 32 10 7 32 1 2 47 16 20 343 0 2 61 0 2 69 chain 40187 chr1 249250621 + 248399975 248400504 L1P3 4156 + 3562 4095 69051 15 0 1 109 0 1 210 0 1 29 0 1 4 8 7 12 0 1 142 chain 20638 chr1 249250621 + 248404922 248405193 AluSp 311 + 14 283 125160 93 15 13 163 chain 21436 chr1 249250621 + 248410383 248410733 L1M1 2793 - 688 1045 122384 11 10 9 5 2 0 231 0 11 9 32 31 50 chain 537882 chr1 249250621 + 248416163 248422171 L1PA3long 6157 + 0 6152 3170 153 1 2 128 0 8 485 0 128 630 1 2 4 1 0 1395 0 1 323 0 1 32 0 1 1069 0 4 1786 chain 63927 chr1 249250621 + 248432476 248433205 L1PA5 6144 - 489 1223 51039 364 1 0 4 0 1 293 0 5 67 chain 40820 chr1 249250621 + 248433222 248433719 L1PA5 6144 + 5634 6132 68147 9 0 1 337 17 17 134 chain 8759 chr1 249250621 + 248452506 248452609 L1PA4 6152 + 6044 6152 166870 97 0 5 6 chain 17492 chr1 249250621 + 248453268 248453475 L1PA7 6471 - 12 219 134285 207 chain 51951 chr1 249250621 + 248453589 248454427 L1PA8 5853 - 224 964 57648 21 2 0 45 1 0 64 2 3 59 26 28 166 10 8 51 95 0 175 1 0 120 chain 7415 chr1 249250621 + 248454047 248454131 L1PA4 6152 - 2 87 174681 6 0 1 78 chain 78992 chr1 249250621 + 248454433 248455418 L1PA8 5853 + 3882 4884 44065 172 0 4 450 1 2 21 9 15 155 0 5 106 0 1 71 chain 273295 chr1 249250621 + 248459168 248462204 L1PA3long 6157 - 10 3052 15004 846 0 1 97 0 1 844 0 4 1249 chain 63132 chr1 249250621 + 248462204 248462901 L1PA3long 6157 + 1859 2556 51247 697 chain 41703 chr1 249250621 + 248462901 248463361 L1PA3long 6157 + 2557 3017 67022 460 chain 4667 chr1 249250621 + 248463363 248463413 L1PA3long 6157 + 6107 6157 198899 50 chain 229310 chr1 249250621 + 248501227 248503987 HERVH-int 3825 - 0 3815 17338 141 0 2 281 1 5 58 8 218 39 9 11 1351 7 34 25 0 1 223 1 0 60 6 7 107 0 805 337 0 4 106 chain 29195 chr1 249250621 + 248504008 248504408 LTR7 482 - 9 482 88072 42 10 12 129 0 32 33 0 1 109 8 46 69 chain 6742 chr1 249250621 + 248519367 248519457 L1PA8 5853 + 5705 5793 179374 39 2 1 15 1 0 33 chain 12073 chr1 249250621 + 248543181 248543318 L1PA5 6144 - 14 151 151887 137 chain 137557 chr1 249250621 + 248557654 248559393 L1P2 5180 - 1788 3515 26551 215 1 0 387 14 18 435 27 10 118 0 2 351 0 1 4 2 1 185 chain 107499 chr1 249250621 + 248559393 248560697 L1PA7 6471 + 5164 6464 34830 457 1 0 510 2 0 6 0 2 320 3 0 5 chain 47356 chr1 249250621 + 248577842 248578378 L1PA4 6152 + 5606 6146 60933 390 1 0 8 0 5 137 chain 5448 chr1 249250621 + 248586837 248586901 MER51C 639 + 0 64 190550 64 chain 7488 chr1 249250621 + 248625071 248625160 L1MA7 2200 - 435 523 174217 46 1 0 42 chain 12747 chr1 249250621 + 248628119 248628382 L1PB1 5432 + 5179 5422 149266 41 2 1 16 1 0 44 1 0 15 1 0 4 2 0 8 8 0 18 9 6 14 2 0 26 8 9 11 2 1 11 1 0 18 chain 13706 chr1 249250621 + 248634171 248634374 MER4D 903 - 552 759 145578 31 7 9 20 1 0 5 0 1 65 5 7 69 chain 457904 chr1 249250621 + 248677429 248682567 L1PA3long 6157 - 5 5183 8473 133 0 7 328 0 1 287 0 1 81 0 4 427 0 4 521 6 10 257 0 1 827 0 4 25 0 4 882 0 2 500 0 1 382 1 6 78 0 1 338 0 1 65 chain 36700 chr1 249250621 + 248683230 248683714 L1PA7 6471 + 5960 6450 73959 30 0 3 17 0 2 295 8 7 12 2 0 88 1 5 31 chain 58416 chr1 249250621 + 248690269 248690968 L1P2 5180 - 2 704 53734 4 1 0 38 1 0 47 5 4 203 0 1 234 0 5 166 chain 530592 chr1 249250621 + 248691258 248697234 L1PA3long 6157 + 7 6152 4123 145 0 1 218 6 0 199 0 6 200 0 128 141 0 1 331 0 1 79 1 6 383 0 1 502 0 2 881 0 4 23 0 4 829 0 1 255 6 10 523 0 4 425 0 4 81 0 1 287 0 1 328 0 7 133 chain 32058 chr1 249250621 + 248697276 248697658 L1PA5 6144 + 5761 6144 80762 120 1 2 261 chain 5009 chr1 249250621 + 248742195 248742253 L1MA2 4263 + 2379 2437 195030 58 chain 8564 chr1 249250621 + 248749599 248749706 L1MA7 2200 + 1679 1785 167936 40 1 0 66 chain 148918 chr1 249250621 + 248765950 248767982 L1PA8 5853 + 3796 5853 24768 70 0 5 32 1 3 61 0 3 112 0 1 23 0 2 172 0 1 53 1 3 70 0 4 76 1 0 270 1 2 68 0 1 177 4 7 47 0 3 22 0 2 10 0 3 105 17 11 6 0 6 58 1 2 228 0 10 39 1 0 45 2 0 69 2 1 12 1 0 5 1 0 48 27 25 25 11 1 58 chain 5344 chr1 249250621 + 248812593 248812658 MER44C 733 + 524 589 191610 65 chain 26671 chr1 249250621 + 248827264 248827754 LTR35B 538 - 8 499 97423 75 1 0 62 94 94 207 33 35 18 chain 110988 chr1 249250621 + 248839625 248840878 SVA_D 2077 + 58 2077 33934 239 1 0 140 0 156 174 2 0 31 0 615 129 1 0 224 1 0 311 chain 95340 chr1 249250621 + 248852970 248854230 L1P3 4156 + 2895 4139 37998 226 1 2 429 5 0 5 1 5 264 16 0 28 0 14 130 16 5 104 2 0 7 2 1 24 chain 4838 chr1 249250621 + 248868777 248868878 LTR39 781 - 12 114 196902 12 29 30 60 chain 36565 chr1 249250621 + 248875685 248876145 MER4A1 472 + 0 458 74153 99 0 2 42 7 3 312 chain 195430 chr1 249250621 + 248878155 248880896 MER4-int 2692 + 7 2689 19546 4 1 0 21 6 4 12 32 26 25 4 0 6 13 11 10 1 2 274 4 5 374 4 17 71 0 4 51 0 1 15 68 14 138 0 3 51 18 1 46 0 3 225 1 2 35 12 11 550 0 2 232 0 3 15 5 6 208 2 0 5 1 4 186 6 0 9 chain 30351 chr1 249250621 + 248880901 248881304 MER4A1 472 + 0 430 83775 106 0 1 118 10 31 28 1 0 63 0 6 77 chain 198322 chr1 249250621 + 248887877 248890038 L1PA3long 6157 - 0 2161 19333 2161 chain 25531 chr1 249250621 + 248890038 248890383 L1PBa 3878 + 3400 3748 102094 78 0 1 236 2 1 4 0 5 13 2 0 10 chain 23952 chr1 249250621 + 248891322 248891616 AluSg 306 + 11 305 110605 294 chain 23475 chr1 249250621 + 248895894 248896232 MER4E 760 + 391 728 113245 10 0 1 4 2 1 5 1 0 197 1 0 4 24 25 90 chain 5012 chr1 249250621 + 248907345 248907437 Charlie1b 519 + 435 519 195007 44 20 12 28 chain 341927 chr1 249250621 + 249058210 249061985 L1PA3long 6157 + 2377 6153 11834 791 5 3 769 3 5 1355 1 0 429 0 2 422 chain 9751 chr1 249250621 + 249070555 249070675 THE1D 372 + 248 369 161839 57 0 1 63 chain 12924 chr1 249250621 + 249074401 249074547 L1PA4 6152 - 10 157 148533 103 0 1 43 chain 8351 chr1 249250621 + 249095855 249095979 MSTA 426 - 18 150 169112 90 7 10 7 0 5 20 chain 9577 chr1 249250621 + 249113497 249113614 MER30 238 - 1 118 162708 117 chain 100897 chr1 249250621 + 249123954 249125178 SVA_B 1603 + 0 1603 36539 5 1 0 5 1 0 9 3 6 14 10 15 369 0 116 94 0 80 72 1 165 77 3 0 142 0 4 103 0 7 176 0 5 139 chain 6051 chr1 249250621 + 249168053 249168160 tRNA-Leu-TTG 101 + 0 101 184806 38 22 17 11 2 1 34 chain 6844 chr1 249250621 + 249168446 249168518 tRNA-Glu-GAG_ 72 + 0 72 178635 72 chain 76977 chr1 249250621 + 249176249 249177123 MER11D 897 - 0 897 44983 287 1 24 367 0 1 4 1 0 214 chain 40745 chr1 249250621 + 249182617 249183203 L1PA17 2846 - 160 744 68249 37 1 0 17 1 0 42 15 17 39 1 0 17 1 0 18 5 1 249 1 0 39 0 6 6 1 0 96 chain 31259 chr1 249250621 + 249183701 249184113 LTR19B 566 + 0 424 82066 36 4 16 66 1 0 40 8 10 5 2 0 42 1 0 127 0 2 80 chain 48484 chr1 249250621 + 249191141 249191721 LTR10C 591 + 0 591 60125 158 0 10 92 1 0 248 0 2 81 chain 198263 chr1 249250621 + 249192651 249195519 L1PA10 4194 + 1276 4161 19337 370 0 2 111 2 0 6 0 2 6 8 10 43 1 2 311 38 40 30 0 1 16 0 4 116 0 6 168 0 1 5 2 21 82 10 11 16 3 0 7 9 4 36 6 7 54 7 6 184 10 2 26 0 1 142 6 0 11 6 7 26 6 5 211 0 1 37 5 6 196 0 1 422 72 69 33 1 0 11 chain 82344 chr1 249250621 + 249201113 249202107 LTR5B 1012 - 0 1012 42612 33 7 8 197 0 6 34 8 12 285 0 7 430 chain 60012 chr1 249250621 + 249205332 249205989 SVA_D 2077 - 15 671 52815 520 1 0 136 chain 247133 chr1 249250621 + 249214345 249217674 L1PA7 6471 - 2 3020 16388 10 4 0 41 2 1 115 12 14 157 1 0 46 0 4 371 1 0 6 0 1 74 0 3 394 0 4 69 0 2 5 1 0 32 0 1 441 0 4 111 325 0 1015 7 11 40 3 0 46 chain 3293 chr1 249250621 + 249234747 249234782 MER72 723 - 8 43 219111 35 chain 28982 chr1 249250621 + 249237552 249237862 AluYb8 318 + 4 314 89084 310 chain 18928 chr2 243199373 + 23060 23393 L1PA14 3548 - 102 411 130298 31 1 0 17 1 0 5 1 0 11 11 10 4 1 0 25 16 11 52 18 5 54 1 0 84 chain 495053 chr2 243199373 + 92246 99392 L1PA7 6471 + 241 6468 7119 44 1 0 118 2 0 23 1 2 133 9 26 84 38 39 291 0 1 4 1 0 624 0 1 313 6 5 101 1016 0 301 0 2 141 0 77 49 7 8 12 13 0 192 0 2 38 1 2 128 0 2 74 0 1 146 0 1 4 1 0 266 2 1 5 0 1 1187 0 2 263 5 3 601 0 4 36 0 4 19 2 0 79 0 5 614 18 19 122 4 0 7 chain 86440 chr2 243199373 + 94045 95055 LTR5A 1029 + 0 1029 40993 134 1 14 623 6 5 84 0 7 162 chain 125333 chr2 243199373 + 126219 127644 SVA_E 1901 + 0 1901 29290 9 13 0 144 1 0 173 3 0 201 1 41 19 0 154 71 0 171 156 1 129 633 chain 3189 chr2 243199373 + 133714 133749 MER50C 576 - 13 48 221145 35 chain 19160 chr2 243199373 + 143111 143341 PABL_A 660 - 430 660 129648 230 chain 65811 chr2 243199373 + 143801 144756 PABL_A-int 1935 - 21 962 50189 16 42 28 16 2 0 18 1 0 64 0 1 40 5 4 405 6 5 47 3 8 5 1 0 168 5 6 95 1 0 15 chain 31959 chr2 243199373 + 150215 150675 MER4A1 472 + 0 472 80922 139 1 0 46 42 47 125 0 1 9 0 3 30 2 4 25 0 2 41 chain 63092 chr2 243199373 + 153395 154298 LTR17 781 - 2 781 51404 39 3 25 116 145 0 272 1 0 327 chain 317501 chr2 243199373 + 154612 158326 HERV17-int 4347 - 0 4335 12701 575 6 17 614 1 0 509 0 1 544 1 2 313 1 0 41 2 0 8 1 0 236 0 3 101 0 1 623 18 631 15 2 0 35 2 1 50 1 0 15 chain 62030 chr2 243199373 + 160033 160782 LTR17 781 - 13 781 51885 17 1 23 91 2 0 310 1 0 327 chain 34353 chr2 243199373 + 164148 164564 L1PA7 6471 + 5111 5529 77124 221 6 8 189 chain 79525 chr2 243199373 + 164564 165489 L1PA7 6471 + 5532 6461 43812 89 0 3 308 0 1 528 chain 14474 chr2 243199373 + 178573 178918 L1PB1 5432 + 5114 5430 142969 24 8 6 12 2 0 3 2 0 9 7 5 13 0 1 32 1 0 19 1 0 41 2 1 16 3 0 6 14 6 18 3 1 5 1 0 14 2 0 24 8 7 11 8 7 31 1 0 4 chain 5195 chr2 243199373 + 190428 190487 L1MB2 1706 + 969 1028 193084 59 chain 25219 chr2 243199373 + 232447 232742 L1PA6 6164 - 2 297 103643 295 chain 3736 chr2 243199373 + 237590 237682 L1MA4 2864 + 2724 2804 211364 12 10 1 5 1 0 15 11 9 38 chain 30677 chr2 243199373 + 257395 257786 MER57A1 433 + 22 424 83079 174 16 27 201 chain 160509 chr2 243199373 + 298694 300686 L1PA6 6164 + 4228 6161 23268 60 0 1 11 0 2 189 8 6 42 10 6 246 21 0 110 22 1 416 0 4 247 0 1 362 17 0 76 2 0 153 chain 339657 chr2 243199373 + 323544 328499 L1PB1 5432 - 10 5415 11908 18 1 0 12 1 0 22 1 0 24 72 55 10 1 0 45 21 19 49 2 0 7 9 5 12 16 14 17 1 0 6 16 9 24 0 1 134 18 12 61 48 48 90 0 1 19 1 0 78 0 2 89 0 1 344 5 9 68 6 4 31 1 468 146 0 2 577 0 3 46 1 0 348 0 1 52 0 1 114 12 39 14 0 3 522 7 6 35 5 6 110 7 8 169 0 2 13 14 10 260 5 0 43 1 0 5 7 8 297 10 12 114 16 20 20 1 0 28 46 42 110 1 0 113 8 0 7 5 12 44 0 1 8 1 0 212 1 0 4 6 0 10 chain 62566 chr2 243199373 + 333923 334630 L1PA3long 6157 + 5456 6156 51644 547 7 0 153 chain 50014 chr2 243199373 + 370067 370678 L1PA8 5853 - 0 606 59006 93 1 0 67 1 0 85 2 0 43 2 1 317 chain 4353 chr2 243199373 + 425339 425389 MLT1A1 405 + 79 129 202556 50 chain 16340 chr2 243199373 + 474363 474605 MSTA 426 - 183 426 137367 37 4 0 50 9 13 39 8 9 95 chain 5031 chr2 243199373 + 482230 482290 MER53 195 + 0 60 194817 60 chain 31784 chr2 243199373 + 536386 536824 MLT2A1 477 + 0 477 81196 169 4 1 11 0 1 21 1 2 180 4 0 8 3 47 37 chain 39184 chr2 243199373 + 590120 590601 MER9a1 513 - 0 513 70483 246 1 23 42 1 0 167 0 11 24 chain 63386 chr2 243199373 + 592213 592994 LTR17 781 + 0 781 51288 31 0 4 85 1 10 169 10 0 28 0 1 160 4 0 9 0 1 4 1 0 279 chain 6972 chr2 243199373 + 615206 615296 Tigger4a 237 - 0 89 177674 57 1 0 32 chain 17943 chr2 243199373 + 667925 668283 THE1D 372 - 3 372 132995 29 1 0 12 18 18 17 0 2 49 8 14 40 73 77 111 chain 29169 chr2 243199373 + 682543 682911 THE1C 375 + 7 375 88202 368 chain 11580 chr2 243199373 + 699940 700081 L1PA7 6471 - 404 545 153979 141 chain 30092 chr2 243199373 + 700081 700461 L1PA7 6471 + 6080 6454 84506 178 8 0 131 7 9 56 chain 9281 chr2 243199373 + 701632 701750 L1PB 1623 - 171 288 164161 6 1 0 111 chain 89965 chr2 243199373 + 702548 703588 LTR5A 1029 - 0 1029 39663 882 1 0 18 13 0 10 0 3 116 chain 56905 chr2 243199373 + 703778 704536 L1PA8 5853 + 5111 5853 54590 59 9 0 390 13 12 36 2 0 71 13 11 50 2 1 19 2 1 92 chain 49174 chr2 243199373 + 704579 705365 L1PB1 5432 + 4636 5391 59614 174 5 6 196 7 8 83 3 0 11 1 0 24 1 0 9 1 0 5 27 21 47 2 1 16 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 8 7 14 chain 4075 chr2 243199373 + 714258 714319 MER3 215 + 122 189 206259 31 1 7 29 chain 34307 chr2 243199373 + 734152 734619 LTR2 463 + 0 463 77196 55 0 3 69 0 3 80 33 23 230 chain 20787 chr2 243199373 + 754299 754523 L1PA2 6032 + 5804 6028 124657 224 chain 3885 chr2 243199373 + 782962 783010 MER53 195 - 129 177 209101 48 chain 21149 chr2 243199373 + 786581 786808 L1PA4 6152 - 357 584 123373 227 chain 29685 chr2 243199373 + 786808 787152 L1PA4 6152 + 5799 6143 85883 344 chain 547629 chr2 243199373 + 799553 805567 L1PA3long 6157 + 0 6152 1750 152 0 1 101 0 1 522 1 129 2324 0 4 1591 0 1 576 0 3 747 chain 219693 chr2 243199373 + 833820 836600 L1PA8A 6298 + 3468 6290 17902 298 1 2 26 0 1 76 0 1 132 0 1 11 0 1 147 12 8 15 0 2 153 0 1 100 0 10 17 6 8 26 1 0 350 2 5 209 0 1 108 0 5 301 12 10 70 0 1 10 1 0 306 0 2 213 1 2 57 1 18 118 chain 2954 chr2 243199373 + 898393 898463 MLT2D 439 + 11 79 226004 18 24 22 28 chain 4534 chr2 243199373 + 932612 932665 THE1A 353 - 174 227 200419 53 chain 51141 chr2 243199373 + 965973 966528 L1PA3long 6157 - 17 572 58227 555 chain 24327 chr2 243199373 + 968236 968637 MSTA 426 + 7 426 108506 33 18 19 139 41 46 56 10 18 74 0 4 30 chain 20467 chr2 243199373 + 988760 988978 L1HS 6032 - 0 218 125711 218 chain 26536 chr2 243199373 + 1001714 1002010 L1PA2 6032 + 5729 6032 97906 155 0 7 141 chain 47158 chr2 243199373 + 1066832 1067346 L1PA2 6032 + 5514 6032 61080 460 0 4 54 chain 22268 chr2 243199373 + 1123403 1123780 L1MA5A 2387 - 1736 2135 119041 19 3 49 10 43 0 87 1 3 154 1 16 13 10 12 36 chain 86184 chr2 243199373 + 1129540 1130669 LTR12C 1709 - 0 1405 41083 77 6 9 265 0 1 129 11 4 106 1 158 23 8 9 80 0 118 150 6 7 100 7 9 65 0 2 5 2 0 88 chain 28318 chr2 243199373 + 1142558 1142898 HERVL-int 5654 + 5307 5647 91876 340 chain 100640 chr2 243199373 + 1173892 1175010 L1PA3long 6157 - 1904 3022 36534 1118 chain 172101 chr2 243199373 + 1175010 1176913 L1PA3long 6157 + 4253 6157 21801 1650 1 2 89 6 6 157 chain 89300 chr2 243199373 + 1190423 1191484 L1PA7 6471 - 9 1075 39887 573 0 1 87 0 4 401 chain 91149 chr2 243199373 + 1211242 1212257 L1PA5 6144 - 0 1015 39249 1015 chain 120931 chr2 243199373 + 1232509 1233931 LTR12C 1709 - 0 1709 30715 481 0 4 84 6 10 12 2 0 8 2 1 95 0 278 446 0 4 286 chain 29889 chr2 243199373 + 1248709 1249049 L1PA3long 6157 + 5813 6157 85139 289 0 4 51 chain 117148 chr2 243199373 + 1289135 1290551 HERVL-int 5654 - 0 1425 32072 74 0 3 148 0 1 210 1 0 597 0 6 386 chain 6315 chr2 243199373 + 1290562 1290635 MLT2A2 560 - 487 560 182678 73 chain 32227 chr2 243199373 + 1302451 1302887 MLT2A1 477 + 0 477 80474 138 0 1 29 8 12 39 0 1 104 1 0 61 4 40 52 chain 18142 chr2 243199373 + 1318506 1318784 THE1B 368 - 62 368 132494 18 0 2 46 29 31 7 0 1 9 0 2 14 1 0 108 0 22 46 chain 533345 chr2 243199373 + 1386506 1392621 L1PA5 6144 - 5 6141 3800 95 0 1 118 0 1 629 0 4 263 0 1 4 4 8 239 0 1 83 0 1 54 0 5 849 0 3 368 16 16 194 4 0 355 0 1 145 8 7 274 0 3 804 0 1 547 0 1 848 1 0 213 chain 240051 chr2 243199373 + 1393798 1396669 L1PA6 6164 - 2 2903 16774 9 0 2 132 15 16 105 0 1 115 12 0 350 4 0 110 0 4 268 1 2 4 1 0 51 0 1 99 0 3 46 6 18 788 0 12 496 0 6 17 0 4 242 chain 22285 chr2 243199373 + 1445653 1445991 THE1B 368 + 0 368 118971 8 0 1 27 3 19 121 1 0 93 13 19 15 2 0 6 10 20 39 chain 401097 chr2 243199373 + 1467697 1473268 L1PB1 5432 - 17 5256 10050 11 1 0 13 1 0 21 1 0 24 2 0 15 7 4 30 14 1 15 1 0 34 11 10 16 2 1 53 2 0 10 5 1 10 1 0 8 1 0 24 3 0 212 5 4 49 3 0 39 7 6 48 0 1 34 0 3 92 2 0 315 0 1 345 2 0 7 9 11 113 1 2 108 0 4 241 0 4 194 0 2 188 1 2 263 0 1 6 1 0 29 0 5 70 0 3 124 0 2 92 6 0 139 0 1 96 304 0 44 0 1 557 1 2 105 0 4 142 14 0 164 11 10 84 0 1 66 2 1 146 0 1 230 0 2 290 1 2 140 5 0 4 0 1 12 2 3 70 chain 96873 chr2 243199373 + 1488682 1489854 L1PA6 6164 - 3 1180 37593 7 2 0 53 1 0 103 8 11 154 2 1 300 0 1 29 1 0 139 0 1 190 0 5 183 chain 12150 chr2 243199373 + 1509413 1509559 L1PA8A 6298 - 14 161 151617 84 0 1 62 chain 307277 chr2 243199373 + 1509636 1513062 L1PA4 6152 - 1 3410 13116 117 25 1 218 0 3 932 0 1 2103 0 3 31 chain 16840 chr2 243199373 + 1552035 1552242 AluY 311 + 2 207 136015 63 0 1 57 6 3 81 chain 74635 chr2 243199373 + 1564055 1565030 LTR5B 1012 - 14 1012 46191 64 0 6 299 45 46 95 1 0 123 1 0 228 0 14 53 1 0 59 0 5 6 chain 13029 chr2 243199373 + 1580511 1580734 MER30 238 + 0 238 148137 108 10 0 7 5 28 10 6 0 8 1 7 10 1 3 57 chain 36286 chr2 243199373 + 1620730 1621207 MER4A1 472 + 1 472 74522 49 12 5 166 4 5 246 chain 182064 chr2 243199373 + 1670900 1673239 L1PA8 5853 + 2809 5853 20776 76 4 5 21 2 0 19 33 0 31 0 4 19 1 5 143 0 737 492 0 1 141 0 1 193 1 0 363 0 3 24 1 0 309 1 0 166 1 0 46 2 0 71 1 0 14 2 0 6 1 2 28 13 12 19 2 1 12 1 0 80 chain 10179 chr2 243199373 + 1694734 1694876 L1PA8 5853 + 5713 5853 159718 30 4 3 14 1 0 93 chain 5718 chr2 243199373 + 1706672 1706752 MER4A1 472 - 139 220 187951 49 4 5 27 chain 116993 chr2 243199373 + 1729080 1730361 L1PA3long 6157 + 4877 6157 32131 1132 1 0 148 chain 8578 chr2 243199373 + 1763638 1763735 MER4A1 472 - 97 194 167862 97 chain 521738 chr2 243199373 + 1763735 1769814 L1PA5 6144 + 0 6116 4992 131 54 80 110 0 3 195 0 8 642 9 0 740 0 1 90 0 1 192 0 2 302 0 1 323 5 0 336 2 1 36 0 2 5 2 0 824 0 1 151 0 1 104 0 1 64 0 2 945 1 0 226 0 3 303 0 1 71 0 2 216 chain 4370 chr2 243199373 + 1782737 1782785 L1PA4 6152 + 5997 6045 202312 48 chain 59003 chr2 243199373 + 1790148 1791209 MER4E1 777 + 0 769 53394 109 0 1 17 1 0 115 1 0 91 320 19 4 0 1 76 0 1 108 1 9 218 chain 21011 chr2 243199373 + 1803494 1803852 THE1D 372 + 0 357 123871 54 45 37 12 0 2 34 0 1 42 16 18 25 1 0 113 0 4 4 1 0 11 chain 4882 chr2 243199373 + 1965659 1965730 L1MA4 2864 + 2740 2809 196453 25 3 1 43 chain 17731 chr2 243199373 + 2033041 2033368 THE1B 368 - 16 356 133620 38 6 7 63 9 8 4 1 0 14 0 4 13 0 3 29 1 0 52 10 11 20 32 39 35 chain 17468 chr2 243199373 + 2053359 2053694 THE1B 368 + 6 345 134335 7 2 0 68 1 2 24 9 10 52 32 26 5 1 0 13 17 29 64 11 10 29 chain 70941 chr2 243199373 + 2072846 2073705 L1PA7 6471 - 1 865 47947 154 2 0 5 1 3 194 0 1 495 0 4 8 chain 65526 chr2 243199373 + 2097212 2097938 L1PA5 6144 - 749 1475 50112 726 chain 66073 chr2 243199373 + 2097938 2098691 L1PA5 6144 + 5381 6131 50066 195 3 0 555 chain 38358 chr2 243199373 + 2136019 2136512 L1PA8 5853 + 5363 5853 71633 201 1 0 6 0 4 36 2 0 68 2 1 61 2 1 19 1 0 87 1 0 6 chain 20970 chr2 243199373 + 2139671 2139912 L1PA8 5853 + 5369 5609 124030 193 1 0 47 chain 190629 chr2 243199373 + 2140501 2142616 L1PA3long 6157 + 4035 6147 19988 1047 2 3 364 5 1 697 chain 10341 chr2 243199373 + 2147534 2147673 L1PA16 3655 + 3389 3529 158940 26 5 6 108 chain 9831 chr2 243199373 + 2155360 2155531 MER44B 551 - 18 179 161446 56 16 19 78 13 0 8 chain 3558 chr2 243199373 + 2201910 2201957 L1MA6 2487 + 2340 2384 214356 36 3 0 8 chain 297143 chr2 243199373 + 2205717 2209046 L1PA4 6152 + 2811 6151 13574 1221 0 1 151 0 1 66 0 8 30 0 1 64 0 2 1633 5 0 147 0 3 12 chain 48465 chr2 243199373 + 2223139 2223690 LTR10C 591 + 10 563 60139 500 0 2 51 chain 58806 chr2 243199373 + 2223864 2224646 MER4E1 777 - 0 777 53522 222 14 13 5 2 0 170 1 0 20 1 0 19 0 4 135 0 1 78 7 1 91 5 6 12 chain 3544 chr2 243199373 + 2261416 2261455 L1HS 6032 - 1724 1763 211523 39 chain 161559 chr2 243199373 + 2261455 2263179 L1HS 6032 + 4308 6032 23119 1724 chain 20016 chr2 243199373 + 2284772 2285106 THE1C 375 + 0 347 127095 118 26 27 35 5 6 25 0 8 8 19 15 85 0 7 13 chain 20559 chr2 243199373 + 2290788 2291037 AluSp 311 + 42 292 125437 181 0 1 68 chain 35879 chr2 243199373 + 2341698 2342097 L1PA4 6152 + 5750 6152 75034 386 0 3 13 chain 8728 chr2 243199373 + 2355311 2355412 L1PA7 6471 + 6367 6468 167040 101 chain 12793 chr2 243199373 + 2358362 2358527 L1PA8A 6298 - 7 173 149086 102 5 6 58 chain 13148 chr2 243199373 + 2365960 2366168 L1PA8 5853 - 0 204 147650 93 1 0 19 2 1 39 26 24 28 chain 454853 chr2 243199373 + 2374630 2380782 L1PA7 6471 - 4 5594 8587 8 2 0 197 0 9 67 28 0 133 5 6 89 0 1 336 1 0 21 0 1 1019 353 17 464 0 1 418 1 2 64 229 0 85 1 2 29 0 1 5 9 8 384 0 4 298 0 1 164 0 1 30 0 2 62 4 5 184 1 2 247 0 1 467 0 2 252 1 2 461 1 6 32 chain 13348 chr2 243199373 + 2377845 2378034 L1PA7 6471 - 2865 3060 146890 65 5 10 27 1 3 15 3 2 73 chain 29542 chr2 243199373 + 2391080 2391473 L1PA8 5853 - 1 387 86443 92 1 0 15 2 1 49 18 16 71 2 0 44 1 0 98 chain 53337 chr2 243199373 + 2416684 2417280 L1PA4 6152 - 9 604 56810 332 1 0 263 chain 20897 chr2 243199373 + 2424283 2424768 L1M1 2793 - 1661 2119 124284 35 0 1 90 0 3 83 35 33 34 24 22 29 12 11 13 109 83 21 chain 13952 chr2 243199373 + 2436332 2436486 L1PA5 6144 + 5983 6139 144743 10 0 2 144 chain 87773 chr2 243199373 + 2452871 2453913 L1PA7 6471 - 10 1055 40457 84 8 0 8 0 8 567 0 1 123 0 1 54 0 1 198 chain 154704 chr2 243199373 + 2453924 2455899 L1P3 4156 - 2154 4133 24017 167 19 20 143 3 5 964 0 1 382 1 0 69 1 0 54 0 1 4 25 26 143 chain 21969 chr2 243199373 + 2459618 2459886 AluY 311 + 28 297 120356 101 1 2 166 chain 23038 chr2 243199373 + 2504243 2504560 THE1A 353 - 27 344 115461 124 1 0 11 1 4 77 1 0 25 2 1 75 chain 6944 chr2 243199373 + 2504621 2504708 MLT1C 463 - 342 429 177866 87 chain 41462 chr2 243199373 + 2552787 2553321 MLT2A2 560 - 15 560 67333 54 0 1 73 0 11 226 1 0 180 chain 7963 chr2 243199373 + 2607541 2607641 MER2 342 - 120 220 171266 100 chain 23524 chr2 243199373 + 2631592 2631918 L1PA8 5853 - 0 323 112992 109 1 0 42 21 23 71 2 0 44 1 0 17 1 0 17 chain 201874 chr2 243199373 + 2680435 2683000 HERVL-int 5654 + 3104 5654 19078 99 0 1 19 21 4 36 2 0 243 0 4 47 1 0 16 1 0 65 0 1 285 0 1 41 0 2 13 27 28 361 0 12 242 3 4 417 6 7 173 6 5 93 29 11 95 1 2 223 chain 28294 chr2 243199373 + 2683001 2683453 MLT2A1 477 + 1 477 91969 139 0 1 28 1 5 31 8 7 145 49 70 31 2 1 18 chain 16319 chr2 243199373 + 2756447 2756722 THE1C 375 + 0 336 137440 108 0 50 25 55 66 87 chain 19034 chr2 243199373 + 2776855 2777215 THE1B 368 - 0 368 130021 56 1 2 7 2 0 63 55 63 60 34 35 82 chain 50946 chr2 243199373 + 2788306 2788882 L1PA5 6144 + 5567 6144 58344 435 0 1 141 chain 20881 chr2 243199373 + 2804842 2805175 THE1B 368 + 0 342 124354 35 5 10 21 5 7 99 1 0 19 18 23 28 1 0 64 7 6 30 chain 37337 chr2 243199373 + 2814743 2815184 L1PA2 6032 - 0 409 73041 8 32 0 401 chain 44122 chr2 243199373 + 2815184 2815660 L1PA2 6032 + 5155 5631 64050 476 chain 279801 chr2 243199373 + 2818651 2821802 L1PA5 6144 - 2 3152 14649 2522 0 1 501 2 0 126 chain 16041 chr2 243199373 + 2848702 2849012 THE1D 372 - 46 372 138245 53 0 1 34 3 19 24 30 29 61 39 42 12 3 0 51 chain 3225 chr2 243199373 + 2872528 2872575 MIR 256 - 145 196 220503 35 1 5 11 chain 18292 chr2 243199373 + 2897979 2898191 AluSp 311 + 43 258 132096 146 0 3 66 chain 7208 chr2 243199373 + 2960657 2960758 L1MB7 1623 + 1033 1133 176009 16 4 3 81 chain 40826 chr2 243199373 + 2973353 2974098 L1PB1 5432 - 5 686 68137 5 2 0 18 1 0 13 1 0 21 1 0 14 38 33 15 24 12 16 8 7 36 3 0 16 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 21 49 19 4 0 1 77 0 2 210 2 0 58 chain 36099 chr2 243199373 + 2985292 2985709 L1PA5 6144 - 0 415 74767 141 1 0 118 1 0 156 chain 3772 chr2 243199373 + 2987370 2987415 MADE1 96 + 50 95 210779 45 chain 18651 chr2 243199373 + 2990836 2991269 L1PB1 5432 + 5041 5423 131083 38 0 4 15 40 16 15 6 5 12 1 0 6 11 7 10 3 1 49 1 0 18 1 0 44 1 0 15 54 40 11 2 0 23 1 0 22 1 0 12 1 0 13 1 0 6 chain 4882 chr2 243199373 + 3020999 3021099 MADE1 96 - 0 96 196455 37 1 0 7 0 15 10 21 3 24 chain 49661 chr2 243199373 + 3022195 3022805 L1PA7 6471 - 2 611 59261 19 0 1 36 1 0 15 17 16 522 chain 234910 chr2 243199373 + 3034321 3036991 L1P1 4361 + 1 2676 17035 205 4 0 1223 0 9 1238 chain 7300 chr2 243199373 + 3079442 3079545 U13_ 108 - 2 108 175446 19 5 8 79 chain 418549 chr2 243199373 + 3087629 3092292 L1PA4 6152 + 1487 6152 9571 8 7 0 1687 0 1 103 1 0 494 0 4 2357 0 5 6 chain 78948 chr2 243199373 + 3108252 3109195 LTR5_Hs 974 - 3 974 44083 101 6 5 37 9 8 414 0 29 91 0 1 285 chain 7555 chr2 243199373 + 3132233 3132317 THE1A 353 - 269 353 173836 84 chain 20942 chr2 243199373 + 3133291 3133564 L1PA8 5853 + 5585 5852 124143 22 2 0 71 2 1 9 1 0 52 2 1 19 1 0 92 chain 27746 chr2 243199373 + 3138905 3139487 L1PB1 5432 - 41 493 93880 21 1 0 7 19 17 14 1 0 5 2 0 19 16 6 6 4 0 16 1 0 43 1 0 16 2 1 53 2 0 10 15 10 9 1 0 23 99 0 176 chain 3473 chr2 243199373 + 3139587 3139628 L1MB7 1623 + 1385 1426 215773 41 chain 111189 chr2 243199373 + 3154428 3156051 L1PBa1 4058 + 10 1618 33886 29 50 49 55 0 3 111 1 0 82 2 1 44 60 56 82 15 16 23 36 30 502 10 9 206 4 0 148 2 1 161 chain 92840 chr2 243199373 + 3156051 3157462 L1PB1 5432 + 4074 5420 38664 37 1 2 57 1 0 281 1 0 175 2 0 79 0 2 108 4 0 175 1 4 43 9 10 6 1 0 30 70 31 24 1 0 5 16 15 11 2 0 51 5 6 11 1 0 43 1 0 16 4 1 16 34 23 10 2 0 13 1 0 5 1 2 4 1 0 21 1 0 13 1 0 16 chain 5863 chr2 243199373 + 3319022 3319377 HAL1-2a_MD 234 + 61 234 186564 21 164 0 21 18 23 17 18 33 18 19 0 18 19 0 22 chain 2960 chr2 243199373 + 3319096 3319189 HAL1-2a_MD 234 + 82 195 225898 21 18 23 17 18 33 19 chain 3701 chr2 243199373 + 3319394 3319526 HAL1-2a_MD 234 + 126 234 197431 17 19 33 18 19 0 18 19 0 22 chain 4797 chr2 243199373 + 3319649 3319819 HAL1-2a_MD 234 + 82 234 197398 21 18 23 17 18 33 18 19 0 18 19 0 22 chain 26924 chr2 243199373 + 3351044 3351388 THE1B 368 + 0 368 96534 44 0 15 115 1 0 24 0 2 106 9 17 45 chain 5516 chr2 243199373 + 3356373 3356440 MER44D 709 + 337 404 189884 67 chain 4768 chr2 243199373 + 3360778 3360843 MER51A 677 + 199 342 197725 37 0 78 28 chain 34977 chr2 243199373 + 3361156 3361585 MER57A1 433 + 0 433 76218 133 0 3 149 1 2 146 chain 38698 chr2 243199373 + 3369254 3369682 SVA_D 2077 - 2 434 71152 11 6 0 325 0 10 86 chain 8376 chr2 243199373 + 3369686 3369777 SVA_D 2077 + 1038 1129 168991 91 chain 556855 chr2 243199373 + 3373017 3379157 L1PA3long 6157 + 0 6153 624 742 2 1 230 0 1 1042 0 1 94 0 3 25 0 3 920 0 1 203 0 2 889 0 3 1993 chain 21985 chr2 243199373 + 3411331 3411593 AluY 311 + 40 309 120288 92 0 1 65 3 9 102 chain 25621 chr2 243199373 + 3498319 3498619 AluY 311 + 4 305 101615 122 0 1 178 chain 23508 chr2 243199373 + 3506221 3506512 AluSp 311 - 10 303 113086 111 0 1 38 2 3 140 chain 5432 chr2 243199373 + 3510730 3510796 L1MCa 1829 - 1044 1111 190679 57 0 1 9 chain 75685 chr2 243199373 + 3518595 3519670 MER11A 1151 + 0 1151 45663 78 1 9 21 0 2 28 0 93 63 4 0 76 0 3 67 7 8 90 0 1 140 0 1 143 1 27 12 43 0 22 18 0 36 0 1 60 6 7 119 1 5 39 chain 21780 chr2 243199373 + 3588658 3588904 AluY 311 + 22 268 121099 246 chain 22048 chr2 243199373 + 3597292 3597553 AluY 311 + 38 298 120029 94 0 1 150 2 0 15 chain 21087 chr2 243199373 + 3612386 3612624 AluSp 311 + 60 298 123582 238 chain 136897 chr2 243199373 + 3616115 3617630 SVA_D 2077 - 21 2073 26662 617 0 1 25 0 534 266 4 0 7 0 3 213 0 3 383 chain 26378 chr2 243199373 + 3620981 3621269 AluYf4 310 - 22 310 98501 288 chain 11208 chr2 243199373 + 3636241 3636441 MER30 238 + 0 231 155389 23 34 35 57 13 43 73 chain 70552 chr2 243199373 + 3637709 3638949 SVA_E 1901 - 0 1235 48135 227 0 314 56 99 0 138 294 0 239 4 0 110 14 52 17 6 46 36 chain 1563 chr2 243199373 + 3637992 3638026 SVA_E 1901 - 646 681 84888 26 0 1 8 chain 2503 chr2 243199373 + 3638062 3638091 SVA_E 1901 - 871 899 143168 15 1 0 13 chain 11356 chr2 243199373 + 3638229 3638476 SVA_E 1901 - 861 1084 84888 32 1 0 48 1 2 35 63 38 4 0 1 63 chain 2449 chr2 243199373 + 3638346 3638388 SVA_E 1901 - 754 796 93048 42 chain 2740 chr2 243199373 + 3638476 3638523 SVA_E 1901 - 863 910 93048 47 chain 1488 chr2 243199373 + 3638990 3639835 SVA_D 2077 - 1179 2023 68309 179 1 2 508 3 1 154 chain 6291 chr2 243199373 + 3659588 3659669 LTR13 1007 - 928 1007 182876 6 2 0 73 chain 141433 chr2 243199373 + 3662745 3664400 SVA_C 1631 - 17 1631 25913 555 1 0 56 0 1 13 4 8 125 4 0 179 40 0 602 1 0 54 8 8 13 chain 37603 chr2 243199373 + 3708078 3708602 LTR10F 562 - 0 562 72681 34 45 47 40 0 4 204 1 4 90 5 33 30 0 1 75 chain 4301 chr2 243199373 + 3710361 3710411 MER58B 340 + 146 196 203205 50 chain 7945 chr2 243199373 + 3731869 3731970 L1MB8 1703 - 624 725 171357 101 chain 15328 chr2 243199373 + 3732030 3732351 L1PB1 5432 - 10 318 140400 4 1 0 14 1 0 11 1 0 23 1 0 26 2 0 12 18 15 8 5 0 14 3 14 45 6 5 10 2 1 51 3 1 9 5 1 14 1 0 10 1 0 20 chain 66446 chr2 243199373 + 3746895 3747864 L1PA15 4387 - 31 980 49894 24 11 6 11 3 1 44 3 0 53 1 0 10 0 2 5 4 0 15 1 0 54 1 0 27 9 8 121 0 3 40 1 0 40 3 1 79 2 0 156 2 0 249 chain 22779 chr2 243199373 + 3769178 3769593 THE1B 368 + 0 368 116681 40 89 29 10 0 15 53 0 1 24 4 1 25 0 2 39 2 1 53 1 0 75 chain 33348 chr2 243199373 + 3778019 3778474 LTR3B_ 500 - 42 500 78656 38 18 22 38 0 1 22 0 3 35 7 1 222 0 1 75 chain 19423 chr2 243199373 + 3782855 3783083 L1PA4 6152 - 0 229 128889 147 2 3 79 chain 10486 chr2 243199373 + 3789063 3789188 LTR1 825 + 693 818 158302 125 chain 43469 chr2 243199373 + 3807888 3808434 L1PA8 5853 + 5313 5853 64848 114 0 1 136 1 0 46 2 0 68 2 1 8 2 1 52 2 1 19 1 0 93 chain 7382 chr2 243199373 + 3812155 3812275 THE1D 372 + 244 372 174892 12 6 15 40 6 5 56 chain 547215 chr2 243199373 + 3841958 3847983 L1PA3long 6157 - 1 6157 1804 398 0 1 472 1 0 118 1 0 4002 0 3 258 0 128 623 0 1 152 chain 400204 chr2 243199373 + 3857234 3862981 L1PA8A 6298 - 7 6258 10091 100 0 1 46 1 0 570 6 7 23 5 8 17 5 6 22 0 3 23 0 1 118 1 5 129 0 1 690 0 1 648 0 1 55 7 10 101 5 0 81 1 0 4 0 1 203 0 1 10 1 2 167 12 14 253 0 4 29 0 3 55 335 0 273 10 6 19 22 29 41 8 0 160 0 1 177 12 402 38 0 2 226 0 2 118 0 9 56 3 0 8 6 2 46 0 1 50 0 469 71 10 25 73 0 1 58 1 0 23 1 2 55 3 4 6 1 0 17 2 0 77 6 0 20 4 3 42 48 32 5 1 0 7 3 2 12 1 0 5 2 0 14 2 0 13 1 0 6 2 1 11 2 1 9 1 0 20 7 0 9 3 0 21 2 4 6 5 0 9 28 14 9 1 0 16 chain 26543 chr2 243199373 + 3863153 3863521 LTR7 482 - 13 482 97869 80 0 4 74 3 4 12 7 42 30 1 12 60 0 50 101 chain 223701 chr2 243199373 + 3865060 3868465 HERVH-int 3825 - 261 3747 17671 266 1 0 38 27 30 214 1 0 41 165 0 173 11 0 160 2 0 25 4 3 196 5 4 5 0 1 64 10 11 232 36 41 33 0 3 309 0 27 257 9 0 208 6 0 3 9 0 45 1 4 393 1 0 13 0 2 6 56 311 21 30 29 63 1 0 61 103 91 25 0 2 76 chain 2642 chr2 243199373 + 3872173 3872203 L1MCc 1008 - 690 720 231131 30 chain 19063 chr2 243199373 + 3895287 3895646 MSTA 426 + 28 426 129926 28 1 0 47 21 45 58 4 0 10 2 0 5 43 45 27 4 24 109 chain 41216 chr2 243199373 + 3898990 3899515 MER41A 554 - 20 554 67631 119 2 12 55 2 0 254 0 1 93 chain 46673 chr2 243199373 + 3906488 3907169 LTR12_ 688 - 1 688 61477 247 0 6 50 12 35 61 43 43 54 24 0 169 1 2 20 chain 5375 chr2 243199373 + 3910837 3910901 MLT2B3 573 - 509 573 191251 64 chain 8628 chr2 243199373 + 3925379 3925477 L1PA3long 6157 + 5903 6001 167601 98 chain 332946 chr2 243199373 + 3935420 3946224 L1PA11 4918 - 289 4911 12092 18 3 1 4 1 0 11 4 1 8 1 0 6 4 0 13 3 1 12 1 0 15 31 22 9 4 0 20 1 0 10 4 3 52 0 3 13 17 14 50 3 7 471 7 0 367 2 5 66 0 1 165 21 16 335 1 2 99 6139 5 209 0 6 42 9 0 95 4 1 243 2 1 393 4 1 37 0 2 100 1 0 62 6 9 15 6 7 172 7 1 206 1 0 322 0 5 136 1 0 105 0 4 108 1 3 253 13 12 35 2 1 6 2 0 31 1 0 53 2 0 13 8 7 20 21 17 29 2 0 35 chain 90726 chr2 243199373 + 3938961 3940352 L1PB1 5432 - 10 1333 39381 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 7 5 14 61 50 22 1 0 15 2 1 52 18 12 11 9 7 22 32 0 11 1 2 292 9 8 174 4 0 61 0 2 5 2 0 50 6 7 148 1 0 51 4 1 205 chain 21479 chr2 243199373 + 3953237 3953518 AluSq 315 + 2 290 122221 132 0 1 9 11 17 129 chain 25686 chr2 243199373 + 3955015 3955366 THE1A 353 - 0 353 101352 29 0 2 212 6 5 16 8 9 80 chain 130097 chr2 243199373 + 3955374 3956943 THE1A-int 1579 - 8 1579 28068 532 0 1 287 1 0 174 0 1 442 0 1 133 chain 116693 chr2 243199373 + 3979382 3981447 L1PB1 5432 - 15 1688 32226 13 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 15 40 36 39 1 0 15 2 1 51 19 13 12 1 0 6 1 0 24 3 0 7 3 4 26 0 4 23 1 0 144 0 4 31 0 19 224 4 0 90 0 1 16 381 0 28 10 7 51 0 1 6 1 0 31 8 0 340 2 4 162 1 0 147 chain 29593 chr2 243199373 + 3980284 3980660 THE1C 375 - 0 375 86227 25 1 0 350 chain 464912 chr2 243199373 + 3981825 3988806 L1PA8A 6298 - 10 6264 8226 100 1 8 300 10 0 389 4 2 805 730 3 763 16 17 17 0 6 9 5 0 169 25 12 180 57 105 37 7 6 502 1 0 6 11 12 78 2 6 219 2 1 31 1 0 2 0 10 474 8 9 373 0 1 14 2 1 54 1 0 4 18 19 44 1 0 276 3 2 86 11 5 28 0 4 475 1 10 14 4 0 6 0 5 115 1 2 37 12 9 19 2 0 77 7 1 21 1 0 43 1 0 7 5 1 13 2 1 8 1 0 6 1 0 6 4 3 12 1 0 4 2 0 17 1 0 17 2 1 11 2 1 8 1 0 13 26 17 19 2 0 19 17 10 5 3 0 11 1 0 15 1 0 6 chain 54942 chr2 243199373 + 3983520 3984164 L1PA4 6152 - 59 690 55747 428 18 5 198 chain 33403 chr2 243199373 + 3995113 3995550 L1PA8 5853 + 5414 5853 78560 148 1 0 48 3 1 68 1 0 10 1 0 51 2 1 10 1 9 93 chain 21411 chr2 243199373 + 4014922 4015194 AluY 311 + 36 309 122468 96 13 11 7 0 3 156 chain 21494 chr2 243199373 + 4015974 4016341 THE1D 372 + 0 372 122164 21 0 2 51 4 5 60 5 6 21 61 62 144 chain 8328 chr2 243199373 + 4034742 4034870 MER44A 345 + 133 269 169234 21 0 9 71 4 0 7 3 6 22 chain 23839 chr2 243199373 + 4044369 4044656 AluSg7 307 + 8 294 111261 123 0 1 148 2 0 14 chain 16847 chr2 243199373 + 4046359 4046712 THE1D 372 + 0 372 135994 55 33 24 14 0 20 15 0 4 30 70 76 17 1 0 85 1 0 32 chain 37914 chr2 243199373 + 4064473 4064961 THE1B-int 1605 - 8 509 72264 73 0 5 25 0 1 182 0 5 157 13 15 38 chain 18741 chr2 243199373 + 4091127 4091491 THE1B 368 + 0 368 130850 106 119 124 10 1 0 128 chain 442450 chr2 243199373 + 4104796 4110399 HERVL-int 5654 + 0 5654 8982 52 7 6 340 0 3 57 4 0 6 0 4 152 0 1 166 0 1 507 4 5 21 0 1 169 5 16 64 0 15 207 70 57 131 3 4 31 1 13 19 0 5 72 18 19 683 0 12 377 1 0 32 0 1 784 4 8 72 0 1 86 18 17 12 4 3 139 6 7 181 2 0 666 7 6 423 chain 13226 chr2 243199373 + 4115520 4115717 L1PA8 5853 - 0 193 147366 92 2 1 15 8 7 50 1 0 9 1 0 19 chain 3311 chr2 243199373 + 4117685 4117727 THE1C 375 + 134 175 218756 30 1 0 11 chain 28225 chr2 243199373 + 4121811 4122187 THE1C 375 - 0 375 92209 26 1 0 155 0 5 152 6 1 36 chain 279742 chr2 243199373 + 4126549 4129768 L1PA5 6144 - 9 3227 14652 104 1 0 29 0 1 534 1 0 783 0 1 19 5 6 582 1 0 900 1 0 259 chain 20055 chr2 243199373 + 4162477 4162745 AluSp 311 + 0 294 126952 123 27 53 118 chain 367061 chr2 243199373 + 4162896 4167466 L1PA7 6471 - 8 4859 11188 131 20 13 188 2 1 427 2 0 86 0 3 70 0 1 298 1 2 4 1 0 136 0 1 523 0 1 7 1 0 123 0 127 709 2 0 57 5 9 312 0 2 128 1 5 84 4 187 55 44 12 66 4 1 54 1 2 259 6 8 192 5 4 49 0 1 513 chain 33338 chr2 243199373 + 4191826 4192193 L1PA4 6152 - 10 378 78675 244 0 1 123 chain 2907 chr2 243199373 + 4194146 4194178 MADE1 96 + 2 34 226916 32 chain 29290 chr2 243199373 + 4195523 4195835 AluYb8 318 - 6 318 87620 312 chain 547332 chr2 243199373 + 4205400 4211429 L1PA3long 6157 + 0 6156 1789 153 1 2 626 0 128 235 2 0 302 1 0 558 0 1 4151 chain 138062 chr2 243199373 + 4216928 4219127 HUERS-P3b-int 2065 - 11 2050 26476 13 36 10 90 1 0 41 24 20 47 36 31 73 3 1 89 1 0 17 4 3 17 3 1 66 3 0 18 29 2 44 5 4 43 1 0 4 0 1 198 0 1 107 2 0 18 19 11 198 0 5 31 1 0 22 1 0 54 1 0 12 4 1 159 0 6 18 3 0 32 7 7 67 0 3 153 75 0 17 4 0 14 1 0 149 0 1 41 4 0 79 chain 19087 chr2 243199373 + 4224470 4224724 HERVL-int 5654 + 5408 5654 129858 25 2 0 7 6 0 214 chain 20604 chr2 243199373 + 4234242 4234475 L1PA7 6471 - 2 235 125280 233 chain 2947 chr2 243199373 + 4249792 4249823 U2 167 + 0 31 226118 31 chain 54816 chr2 243199373 + 4280841 4281457 L1PA5 6144 - 0 614 55826 5 2 0 609 chain 11338 chr2 243199373 + 4281457 4281592 L1P1 4361 + 2213 2347 154924 101 1 0 33 chain 48301 chr2 243199373 + 4286309 4286845 L1PA5 6144 + 5602 6138 60241 536 chain 23223 chr2 243199373 + 4286868 4287357 L1PA15 4387 + 3875 4348 114579 15 2 0 43 1 0 86 48 52 33 1 0 26 1 0 55 1 0 22 4 0 6 9 8 35 40 38 20 3 1 14 5 0 19 chain 12285 chr2 243199373 + 4307671 4307810 AluSp 311 + 164 303 151057 139 chain 31387 chr2 243199373 + 4307904 4308721 MLT2A2 560 - 0 560 81842 38 408 21 59 5 132 118 0 3 189 chain 8169 chr2 243199373 + 4325331 4325421 L1PA4 6152 - 269 359 170122 90 chain 19938 chr2 243199373 + 4325421 4325640 L1PA4 6152 + 5933 6152 127335 219 chain 50407 chr2 243199373 + 4337361 4337992 L1PA8 5853 + 5221 5850 58708 158 0 2 142 0 3 38 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 90 chain 14886 chr2 243199373 + 4353367 4353675 L1PB1 5432 + 5105 5382 141665 9 3 0 21 1 0 11 1 0 10 6 3 9 2 0 51 7 6 11 1 0 45 6 5 10 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 12 chain 392625 chr2 243199373 + 4356083 4360965 L1PA7 6471 - 1 6042 10374 78 0 1 275 0 12 146 0 1 163 0 1 102 0 1118 26 6 0 59 1 2 431 7 10 36 0 1 103 4 0 586 1 2 364 1 2 106 0 1 131 1 5 76 6 1 878 24 28 305 0 10 537 8 9 63 1 14 81 0 1 276 chain 32356 chr2 243199373 + 4373397 4373845 L1PA8 5853 - 0 458 80266 15 0 13 65 1 0 19 2 1 51 16 13 68 2 0 10 0 5 29 2 1 168 chain 10378 chr2 243199373 + 4424004 4424125 THE1D 372 - 4 125 158795 121 chain 45621 chr2 243199373 + 4501014 4501591 L1PA8A 6298 - 165 748 62382 255 0 1 105 16 19 37 7 8 134 0 1 23 chain 41489 chr2 243199373 + 4520455 4521015 MLT2A2 560 - 0 560 67294 143 0 11 315 13 12 34 10 0 45 chain 29865 chr2 243199373 + 4529923 4530292 THE1B-int 1605 + 4 374 85230 30 0 2 13 1 0 325 chain 437391 chr2 243199373 + 4532164 4537792 HERVL-int 5654 - 21 5654 9114 252 5 4 147 48 9 239 0 1 186 1 3 246 0 1 348 10 11 184 1 0 342 2 0 45 11 19 62 5 6 247 0 3 162 3 4 31 0 3 84 7 6 346 0 1 94 0 17 59 0 1 744 0 2 133 0 1 116 1 7 39 4 0 284 1 0 412 2 3 135 2 3 4 1 0 92 0 2 32 1 0 322 0 3 136 chain 5224 chr2 243199373 + 4538237 4538297 THE1B-int 1605 + 1540 1600 192794 60 chain 3330 chr2 243199373 + 4560841 4560882 MIR 256 - 135 176 218391 41 chain 11181 chr2 243199373 + 4590340 4590484 MSTA 426 - 18 162 155508 144 chain 11872 chr2 243199373 + 4591335 4591620 MLT1A0 366 - 12 300 152734 97 101 103 15 13 14 59 chain 67752 chr2 243199373 + 4610795 4611908 L1PB1 5432 + 4373 5414 49346 62 0 1 63 4 5 123 0 3 212 0 1 6 0 3 202 15 15 25 58 9 11 1 0 24 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 12 4 3 39 6 5 16 2 0 6 17 7 18 7 4 15 0 5 6 9 2 11 1 0 21 1 0 13 1 0 10 chain 3384 chr2 243199373 + 4622809 4622858 L1PA7 6471 + 6425 6468 217392 37 6 0 6 chain 3580 chr2 243199373 + 4632107 4632146 MER51B 395 - 11 50 213989 39 chain 30139 chr2 243199373 + 4660207 4660593 MLT2A1 477 - 94 477 84354 213 8 5 165 chain 84348 chr2 243199373 + 4662923 4663895 L1PA5 6144 - 2 982 41771 15 4 3 186 0 1 65 0 1 125 0 4 444 1 0 19 0 4 113 chain 44579 chr2 243199373 + 4668665 4669154 L1PA4 6152 + 5662 6151 63498 489 chain 70052 chr2 243199373 + 4684842 4685816 L1PA8 5853 + 4878 5853 48371 128 1 0 3 2 0 28 0 1 46 0 2 37 0 1 435 8 14 33 4 2 71 1 0 9 1 0 54 1 0 14 6 5 71 0 1 4 4 3 13 chain 547294 chr2 243199373 + 4690558 4696555 L1PA2 6032 + 0 6031 1796 1273 9 0 10 0 9 1280 0 5 8 5 0 553 0 3 415 0 2 383 0 1 494 0 28 1567 chain 3621 chr2 243199373 + 4739463 4739505 MSTC 436 + 388 430 213320 42 chain 10565 chr2 243199373 + 4739528 4739667 MLT2A2 560 + 51 191 157976 24 1 2 114 chain 36939 chr2 243199373 + 4756261 4756695 L1PA5 6144 + 5709 6144 73603 34 0 1 400 chain 32309 chr2 243199373 + 4764294 4764738 MLT2A1 477 + 0 477 80355 170 4 1 8 0 1 24 0 1 180 4 0 9 6 44 39 chain 22310 chr2 243199373 + 4769934 4770193 L1PA6 6164 - 8 267 118875 259 chain 568332 chr2 243199373 + 4781319 4787350 L1HS 6032 + 0 6032 14 74 0 1 5957 chain 31001 chr2 243199373 + 4808903 4809292 L1PA7 6471 + 6060 6447 82511 184 1 0 63 18 17 123 chain 22138 chr2 243199373 + 4812142 4812456 L1PA8 5853 + 5544 5853 119628 20 1 0 115 11 9 52 2 1 19 2 1 92 chain 94555 chr2 243199373 + 4841414 4842447 L1PA3long 6157 - 1242 2275 38138 1033 chain 111478 chr2 243199373 + 4842447 4843675 L1PA3long 6157 + 4922 6152 33816 1040 0 2 188 chain 6992 chr2 243199373 + 4863584 4863742 MER2 342 - 64 224 177525 25 51 51 13 1 0 8 0 3 60 chain 3568 chr2 243199373 + 4884167 4884243 Charlie1a 1436 + 848 937 214164 31 21 34 24 chain 3266 chr2 243199373 + 4932383 4932469 LTR12C 1709 + 654 697 219670 23 43 0 20 chain 24156 chr2 243199373 + 4980582 4980917 THE1A 353 + 15 353 109448 47 1 5 35 19 18 233 chain 124361 chr2 243199373 + 4982039 4983468 LTR12C 1709 - 0 1709 29579 481 0 4 106 9 6 85 0 278 312 0 1 436 chain 30293 chr2 243199373 + 4996033 4996423 MLT2A1 477 + 0 385 83953 167 8 5 202 2 0 11 chain 7036 chr2 243199373 + 5134460 5134617 MER49 923 - 154 314 177205 70 58 61 29 chain 39754 chr2 243199373 + 5140901 5141349 LTR7 482 + 0 482 69680 247 0 31 27 0 3 174 chain 296136 chr2 243199373 + 5141351 5145154 HERVH-int 3825 + 0 3825 13637 212 0 11 312 10 5 29 3 2 9 1 0 9 4 0 14 7 1 14 1 0 13 112 0 19 63 0 9 1 0 14 41 0 18 1 21 17 2 1 49 1 0 447 15 0 197 6 7 255 4 31 217 10 12 1147 0 3 25 1 211 494 chain 39879 chr2 243199373 + 5146413 5146863 LTR7 482 + 0 482 69486 225 0 1 21 0 31 204 chain 7812 chr2 243199373 + 5179172 5179323 THE1D 372 - 207 366 172237 37 35 33 12 4 0 9 0 14 54 chain 101295 chr2 243199373 + 5189901 5190996 L1PA2 6032 - 0 1095 36444 1095 chain 43630 chr2 243199373 + 5247819 5248326 L1PA4 6152 - 16 526 64652 158 0 4 75 2 1 272 chain 41014 chr2 243199373 + 5282815 5283265 L1PA3long 6157 + 5702 6152 67881 450 chain 90661 chr2 243199373 + 5306320 5307562 L1PA8 5853 + 4629 5852 39402 390 1 0 4 0 1 8 10 0 49 0 2 262 24 17 121 1 3 36 1 0 42 1 0 44 2 0 67 3 4 14 1 0 47 2 1 15 7 6 90 chain 38867 chr2 243199373 + 5322479 5322981 THE1C-int 1605 + 0 515 70920 13 5 6 188 1 0 122 0 6 110 0 7 63 chain 277492 chr2 243199373 + 5337038 5340044 L1PA2 6032 + 3027 6032 14776 36 1 0 2969 chain 90312 chr2 243199373 + 5397618 5398708 L1P3 4156 - 2492 3582 39449 1090 chain 342930 chr2 243199373 + 5398708 5402911 L1PA7 6471 + 2253 6465 11809 328 0 2 58 13 2 65 0 3 375 1 2 317 0 1 85 9 7 25 1 2 86 14 15 203 3 0 171 0 1 370 1 3 561 0 1 371 0 5 115 0 5 189 1 0 176 0 1 333 0 1 72 0 5 100 1 0 150 3 0 6 chain 5795 chr2 243199373 + 5410287 5410381 L1PB2 3958 - 128 222 187189 12 0 3 39 2 1 27 2 0 12 chain 35520 chr2 243199373 + 5419844 5420231 L1PA2 6032 - 542 929 75525 387 chain 48938 chr2 243199373 + 5420231 5420766 L1PA2 6032 + 5497 6032 59783 535 chain 3663 chr2 243199373 + 5432314 5432376 L1PB1 5432 - 195 248 212522 16 10 1 36 chain 11449 chr2 243199373 + 5439594 5439744 L1PA7 6471 - 3 151 154502 7 2 0 141 chain 19328 chr2 243199373 + 5439744 5439984 L1PA7 6471 + 5995 6234 129149 195 1 0 44 chain 4806 chr2 243199373 + 5461395 5461455 MER30 238 - 20 80 197278 60 chain 23369 chr2 243199373 + 5487786 5488035 AluYa5 310 - 0 249 113821 249 chain 24031 chr2 243199373 + 5498650 5498945 AluSp 311 + 1 299 110161 60 0 3 235 chain 6410 chr2 243199373 + 5534732 5534803 L1PA7 6471 + 6234 6305 181941 71 chain 8717 chr2 243199373 + 5534842 5534944 L1PA7 6471 + 6365 6467 167100 102 chain 13974 chr2 243199373 + 5540996 5541162 L1PA5 6144 + 5969 6134 144669 20 1 0 145 chain 8781 chr2 243199373 + 5639020 5639126 MLT2B1 522 + 0 106 166761 106 chain 17274 chr2 243199373 + 5763636 5763986 L1PB1 5432 + 5105 5422 134852 9 3 0 24 1 0 4 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 45 33 11 2 0 24 1 0 22 1 0 12 1 0 18 chain 43888 chr2 243199373 + 5784386 5784931 MLT2A2 560 + 14 560 64346 192 0 1 353 chain 24701 chr2 243199373 + 5787665 5788022 THE1C 375 - 12 374 106433 13 1 0 117 6 9 16 16 18 183 0 1 5 chain 29209 chr2 243199373 + 5791246 5791580 L1PA5 6144 + 5794 6128 88003 334 chain 19728 chr2 243199373 + 5795024 5795413 THE1D 372 + 0 372 128021 56 63 46 64 40 42 16 1 0 100 4 3 45 chain 7461 chr2 243199373 + 5805206 5805293 L1PA8 5853 - 0 87 174392 87 chain 117891 chr2 243199373 + 5872841 5874268 L1PA7 6471 + 5045 6466 31833 576 1 0 77 1 3 68 26 18 350 1 0 178 1 0 27 0 3 121 chain 29347 chr2 243199373 + 5884747 5885056 AluYa5 310 - 1 310 87311 309 chain 28707 chr2 243199373 + 5902082 5902392 AluYa5 310 - 0 310 90309 310 chain 41798 chr2 243199373 + 5963059 5963572 MER75 514 - 0 514 66902 25 0 1 488 chain 28399 chr2 243199373 + 5977741 5978051 AluYa5 310 - 0 310 91588 310 chain 23494 chr2 243199373 + 5983978 5984260 AluY 311 + 8 297 113149 111 3 0 14 1 0 138 0 11 15 chain 245080 chr2 243199373 + 5996991 6000000 L1PA7 6471 - 9 3014 16506 148 8 6 126 1 8 375 11 1 44 5 6 47 2 0 80 1 0 178 1 0 4 2 5 325 0 1 529 0 1 4 1 0 160 0 2 130 6 7 175 1 2 88 7 6 175 3 0 372 chain 74031 chr2 243199373 + 6000000 6000897 L1P3 4156 - 702 1601 46496 668 0 1 93 1 0 33 2 4 100 chain 322966 chr2 243199373 + 6030261 6034010 L1PA6 6164 - 2 3762 12482 1128 0 1 202 1 2 237 0 2 545 0 3 249 0 1 273 1 2 289 0 1 37 0 1 787 chain 18321 chr2 243199373 + 6039518 6039724 L1PA3long 6157 + 5952 6157 132018 37 1 0 168 chain 23775 chr2 243199373 + 6045053 6045342 AluSc 308 + 18 307 111622 289 chain 27071 chr2 243199373 + 6101839 6102195 THE1B 368 + 0 356 96033 12 3 1 23 0 6 132 1 0 117 3 0 65 chain 19267 chr2 243199373 + 6151206 6151442 L1PA6 6164 - 2 239 129328 9 0 2 136 1 0 90 chain 18004 chr2 243199373 + 6181347 6181649 THE1B 368 + 0 306 132846 156 43 49 4 1 0 5 0 1 9 7 6 12 1 0 64 chain 159899 chr2 243199373 + 6237687 6240023 L1PB1 5432 - 10 2321 23353 18 2 1 11 1 0 22 1 0 24 2 0 14 9 6 13 27 17 15 1 0 44 1 0 16 2 1 52 2 0 9 22 17 8 1 0 19 9 0 8 30 33 61 0 6 20 11 10 16 6 0 22 6 7 298 0 1 6 3 0 328 0 1 333 0 3 6 15 9 215 3 4 212 0 15 309 2 0 81 chain 5462 chr2 243199373 + 6258569 6258650 L1M3c 1411 + 625 703 190388 59 3 0 19 chain 52037 chr2 243199373 + 6262191 6262776 L1PA5 6144 + 5547 6132 57599 585 chain 6011 chr2 243199373 + 6272012 6272107 L1MA8 2339 + 2119 2205 185123 45 3 0 32 6 0 9 chain 77843 chr2 243199373 + 6274776 6276029 L1PB1 5432 + 4219 5424 44599 309 3 5 95 4 1 417 0 1 6 1 0 47 38 14 21 1 0 12 16 11 11 2 0 50 1 0 18 1 0 10 6 11 23 1 0 20 66 49 12 15 14 16 0 3 9 1 0 16 1 0 4 chain 3758 chr2 243199373 + 6281480 6281532 MLT2A2 560 + 506 558 210993 22 0 1 12 1 0 17 chain 3343 chr2 243199373 + 6281600 6281640 MLT2A2 560 + 521 560 218187 20 1 0 19 chain 27877 chr2 243199373 + 6281803 6282178 MLT2A1 477 - 93 477 93431 7 1 0 45 0 4 154 8 12 112 0 2 48 chain 122288 chr2 243199373 + 6301704 6303154 L1PA6 6164 + 4694 6162 30282 13 2 1 453 0 2 382 0 1 426 0 12 7 1 2 4 1 0 48 0 4 113 chain 49352 chr2 243199373 + 6335085 6335675 LTR10C 591 - 1 591 59487 254 2 1 9 0 1 325 chain 22119 chr2 243199373 + 6350180 6350525 THE1D 372 + 4 335 119712 47 8 7 18 15 0 7 3 0 98 8 12 127 0 1 14 chain 20967 chr2 243199373 + 6367105 6367392 AluSp 311 - 17 300 124045 6 5 0 156 1 0 75 14 16 30 chain 15425 chr2 243199373 + 6393705 6393909 L1PB2 3958 - 120 320 140114 63 1 0 22 2 0 72 1 0 43 chain 56852 chr2 243199373 + 6416088 6416845 L1PA8A 6298 - 406 1161 54630 319 1 0 75 8 9 180 2 3 50 0 1 93 7 3 22 chain 28727 chr2 243199373 + 6416952 6417331 L1PA8A 6298 + 5916 6291 90224 85 1 0 185 11 8 97 chain 480445 chr2 243199373 + 6467622 6473211 L1PA6 6164 - 2 5582 7716 4 1 0 447 0 4 434 0 1 629 1 0 1453 0 1 222 0 2 172 0 1 458 21 0 425 0 9 1122 4 0 196 chain 31330 chr2 243199373 + 6475489 6475914 MLT2A1 477 - 0 477 81933 37 1 3 9 3 43 166 0 1 48 4 1 139 0 12 18 chain 9785 chr2 243199373 + 6480426 6480562 MER30 238 + 89 238 161679 18 4 17 114 chain 159179 chr2 243199373 + 6517225 6519503 L1PB1 5432 + 3144 5423 23443 176 1 2 41 6 7 356 11 13 101 0 1 14 13 27 74 1 0 36 1 0 23 3 12 481 0 4 117 10 5 73 0 1 395 1 2 8 2 1 16 8 7 10 1 0 11 5 1 9 2 0 10 1 9 33 2 1 16 1 0 44 1 0 15 14 1 30 7 4 15 2 0 24 1 0 20 2 1 13 1 0 15 1 0 4 chain 40019 chr2 243199373 + 6557061 6557645 LTR66 600 - 23 600 69294 104 0 33 27 62 10 253 10 22 128 chain 29541 chr2 243199373 + 6560024 6560334 AluYa5 310 - 0 310 86467 310 chain 101478 chr2 243199373 + 6677499 6678778 L1P3 4156 + 0 1264 36404 251 2 1 52 5 0 18 1 0 292 16 9 143 5 1 186 0 1 121 0 2 187 chain 27596 chr2 243199373 + 6731031 6731337 L1PA2 6032 - 7 313 94354 306 chain 9774 chr2 243199373 + 6747371 6747507 THE1C 375 - 0 137 161724 26 12 13 98 chain 104565 chr2 243199373 + 6751003 6752251 L1PA7 6471 - 5 1247 35606 329 1 0 467 0 1 48 1 0 267 5 0 130 chain 3301 chr2 243199373 + 6804109 6804164 MER5A1 166 - 41 97 218965 27 7 8 21 chain 15543 chr2 243199373 + 6829748 6830098 L1PB1 5432 + 5107 5422 139756 7 5 0 6 0 3 11 1 0 10 1 0 12 2 0 3 2 0 9 2 0 53 5 1 14 1 0 45 1 0 15 67 50 24 2 1 20 1 0 31 chain 35545 chr2 243199373 + 6849682 6850140 L1PA8 5853 - 0 451 75480 85 9 8 19 2 1 51 1 0 8 1 0 73 2 0 44 1 0 162 chain 20009 chr2 243199373 + 6907023 6907276 L1PA7 6471 - 1 253 127116 4 1 0 149 1 0 32 0 1 66 chain 29307 chr2 243199373 + 6960534 6960924 MLT2A2 560 - 0 560 87538 43 4 0 8 0 4 88 0 170 67 1 0 117 0 1 62 chain 6019 chr2 243199373 + 6973430 6973810 MLT1A 405 - 62 405 185056 49 280 248 16 5 0 30 chain 21557 chr2 243199373 + 6993789 6994049 AluY 311 + 38 300 121933 88 0 1 148 6 7 18 chain 19665 chr2 243199373 + 6998590 6998920 THE1B 368 + 0 356 128210 40 0 15 117 1 0 26 68 80 78 chain 114702 chr2 243199373 + 6998932 7000495 THE1B-int 1605 + 0 1604 32882 12 4 6 119 0 1 204 0 1 73 10 35 207 19 18 17 1 6 54 20 22 367 3 7 95 8 15 6 7 0 225 0 1 37 5 6 70 chain 23162 chr2 243199373 + 7000498 7000840 THE1B 368 + 2 368 114848 42 0 15 109 1 0 30 8 6 10 17 29 125 chain 42532 chr2 243199373 + 7020338 7020903 LTR19B 566 - 0 566 65976 115 0 1 25 0 1 125 8 6 25 17 18 75 0 1 8 1 0 166 chain 535275 chr2 243199373 + 7038956 7045746 L1PA7 6471 - 11 6471 3553 425 1 0 275 2 0 21 5 1 117 1 0 811 0 1 144 1 4 708 0 1 116 2 0 315 1 0 24 1 0 458 0 3 872 3 1 6 0 2 120 0 1 53 0 3 39 0 1 58 0 2 1025 0 1 4 1 0 49 6 0 4 327 0 184 1 0 196 3 4 411 chain 11877 chr2 243199373 + 7048399 7048674 L1PB1 5432 + 5167 5420 152710 50 21 19 41 45 31 19 2 0 5 1 0 14 2 0 12 11 12 21 1 0 13 1 0 16 chain 28119 chr2 243199373 + 7058625 7058921 AluYd8 298 + 0 296 92579 296 chain 71349 chr2 243199373 + 7104314 7105109 L1PA3long 6157 + 5360 6157 47769 647 1 3 147 chain 27449 chr2 243199373 + 7110277 7110647 THE1B 368 + 0 368 94820 15 2 0 22 0 5 130 3 2 19 4 0 175 chain 5008 chr2 243199373 + 7129816 7129989 L1MC3 1789 - 1323 1474 195043 27 102 80 44 chain 17516 chr2 243199373 + 7136660 7136899 AluSc8 310 + 57 298 134221 75 0 3 97 9 10 50 2 0 6 chain 3011 chr2 243199373 + 7211895 7211934 MLT2C1 407 + 66 105 224814 39 chain 3480 chr2 243199373 + 7261111 7261149 L1PA8 5853 - 39 77 215657 38 chain 3480 chr2 243199373 + 7261299 7261337 L1PA8 5853 - 39 77 215656 38 chain 3480 chr2 243199373 + 7261440 7261478 L1PA8 5853 - 39 77 215655 38 chain 32560 chr2 243199373 + 7266336 7266720 L1PA7 6471 - 12 396 79929 384 chain 22592 chr2 243199373 + 7278307 7278586 L1PA6 6164 + 5887 6162 117619 269 4 0 6 chain 93523 chr2 243199373 + 7281657 7282776 L1PA7 6471 + 5236 6357 38501 169 0 1 214 2 1 80 6 2 293 0 7 159 4 3 192 chain 173835 chr2 243199373 + 7316276 7318199 L1PA3long 6157 + 4234 6157 21607 407 1 0 240 0 4 422 1 0 219 0 1 625 3 0 5 chain 24714 chr2 243199373 + 7319218 7319522 AluSp 311 - 2 306 106361 304 chain 9347 chr2 243199373 + 7349631 7349763 MER85 139 - 0 139 163813 29 7 14 96 chain 14534 chr2 243199373 + 7358654 7359083 L1PB1 5432 - 14 436 142788 11 1 7 8 1 0 8 0 2 10 1 0 26 2 0 14 1 0 5 3 1 14 16 9 6 2 0 17 1 0 43 1 0 16 3 1 51 130 135 38 chain 27302 chr2 243199373 + 7359099 7359402 L1PA5 6144 - 9 312 95269 303 chain 164607 chr2 243199373 + 7436835 7438911 HERVL-int 5654 - 11 2107 22726 63 0 3 144 4 0 55 0 2 121 0 13 13 1 4 7 2 0 313 0 3 10 0 1 688 0 1 655 chain 54541 chr2 243199373 + 7460633 7461218 L1PA3long 6157 - 2 587 56004 585 chain 28451 chr2 243199373 + 7470171 7470524 THE1A 353 + 2 353 91365 108 1 0 64 0 1 27 1 0 94 1 0 57 chain 58760 chr2 243199373 + 7477862 7478498 SVA_D 2077 - 13 660 53547 325 0 10 73 0 1 238 chain 3544 chr2 243199373 + 7505139 7505178 MADE1 96 - 2 41 214653 39 chain 1783 chr2 243199373 + 7528547 7528700 THE1A 353 - 0 153 97334 153 chain 13410 chr2 243199373 + 7528700 7528898 THE1A 353 - 155 353 146673 13 7 8 67 4 3 107 chain 126336 chr2 243199373 + 7528898 7530487 THE1A-int 1579 - 0 1579 28997 105 0 1 241 2 0 220 0 1 61 0 1 324 14 0 40 0 1 234 0 1 207 0 1 141 chain 9877 chr2 243199373 + 7530499 7530634 THE1A 353 - 12 144 161187 124 3 0 8 chain 2307 chr2 243199373 + 7530640 7530838 THE1A 353 - 153 353 97334 69 0 3 20 1 0 108 chain 24994 chr2 243199373 + 7555626 7555910 L1PA4 6152 - 0 290 104828 6 0 5 249 0 1 29 chain 14838 chr2 243199373 + 7582013 7582475 THE1B 368 + 0 368 141816 47 32 39 23 2 5 6 2 0 49 52 69 6 1 0 63 133 15 46 chain 19748 chr2 243199373 + 7635747 7635994 AluYc 301 + 38 288 127962 44 0 1 31 0 2 172 chain 4548 chr2 243199373 + 7644622 7644673 Tigger2 2703 - 297 348 200246 51 chain 31255 chr2 243199373 + 7668167 7668595 MLT2A1 477 - 0 477 82072 23 5 62 8 6 0 43 0 1 171 5 2 167 chain 3884 chr2 243199373 + 7682797 7682839 LTR40b 463 + 162 204 209115 42 chain 37954 chr2 243199373 + 7725774 7726236 LTR2 463 - 0 463 72202 88 12 13 362 chain 56736 chr2 243199373 + 7731659 7732431 MER4E 760 - 0 760 54693 231 20 0 75 19 23 68 0 2 126 1 0 59 22 25 151 chain 121992 chr2 243199373 + 7780701 7782247 THE1A-int 1579 - 17 1579 30388 876 9 15 210 0 1 70 0 9 381 chain 118509 chr2 243199373 + 7784554 7786107 THE1A-int 1579 - 0 1566 31616 210 19 17 443 7 13 351 10 11 13 1 2 24 2 7 360 0 2 113 chain 3514 chr2 243199373 + 7794414 7794478 LTR52 417 - 25 89 215156 10 1 0 9 8 9 36 chain 24604 chr2 243199373 + 7836715 7837082 LTR7 482 - 8 482 106971 107 1 2 59 0 1 42 6 38 74 0 50 21 6 6 15 13 36 23 chain 75769 chr2 243199373 + 7839968 7841094 L1PA15 4387 - 61 1180 45610 13 5 3 35 12 9 49 1 0 10 4 0 22 1 0 11 5 21 23 1 0 20 9 8 110 0 1 56 6 5 33 8 6 56 9 5 17 2 0 67 0 1 104 20 16 383 0 1 34 chain 55891 chr2 243199373 + 7858369 7859013 L1PA5 6144 - 16 663 55187 131 0 1 410 1 2 65 0 1 37 chain 28077 chr2 243199373 + 7859666 7860051 MER51B 395 + 0 395 92727 139 23 34 72 1 0 150 chain 24253 chr2 243199373 + 7902749 7903106 THE1B 368 - 0 368 108927 75 1 0 83 13 11 25 3 2 105 8 23 44 chain 25551 chr2 243199373 + 7904708 7905045 THE1B 368 - 20 368 101979 57 1 0 96 2 0 20 4 3 117 0 15 40 chain 33538 chr2 243199373 + 7952848 7953269 MER57A1 433 - 2 433 78335 41 0 4 102 0 2 55 0 4 223 chain 14277 chr2 243199373 + 7958159 7958494 L1PB1 5432 + 5116 5416 143627 18 1 0 13 1 0 11 5 1 10 2 0 6 0 1 17 14 9 18 2 1 16 1 0 39 5 4 16 29 16 15 2 0 5 1 0 14 2 0 24 1 0 14 0 1 6 1 0 13 1 0 12 chain 34719 chr2 243199373 + 7981628 7982158 MER1A 529 - 0 529 76595 55 39 17 77 1 0 245 37 59 76 chain 14177 chr2 243199373 + 8006446 8006664 MER30 238 + 0 238 143964 17 23 23 67 4 24 107 chain 41284 chr2 243199373 + 8012836 8013287 LTR7 482 - 0 482 67551 187 0 31 264 chain 290144 chr2 243199373 + 8014524 8018569 HERVH-int 3825 - 0 3825 14013 405 49 67 15 8 218 229 0 11 446 0 18 700 4 31 382 0 1 79 15 0 143 1 0 20 0 1 278 0 3 12 0 2 14 8 0 51 2 1 22 8 8 12 1 0 25 3 0 12 1 0 13 29 0 26 1 0 1 448 0 9 1 0 38 5 0 56 0 1 93 0 2 380 chain 6293 chr2 243199373 + 8017549 8017627 HERVH-int 3825 - 3255 3389 182865 25 0 56 53 chain 2917 chr2 243199373 + 8017627 8017668 HERVH-int 3825 - 3269 3305 199370 24 5 0 12 chain 8922 chr2 243199373 + 8017795 8017947 HERVH-int 3825 - 3246 3389 166021 9 1 0 38 5 0 12 21 20 12 2 0 52 chain 39822 chr2 243199373 + 8018571 8019022 LTR7 482 - 0 482 69590 98 0 2 90 0 31 209 2 0 52 chain 13293 chr2 243199373 + 8077927 8078218 MLT2A1 477 + 214 477 147121 8 0 8 121 0 8 16 107 63 39 chain 22720 chr2 243199373 + 8112476 8112839 THE1D 372 + 0 372 116985 104 1 0 46 64 74 148 chain 12379 chr2 243199373 + 8139557 8139697 L1PA5 6144 + 6004 6144 150711 140 chain 29118 chr2 243199373 + 8145484 8145795 AluYb8 318 - 7 318 88464 311 chain 19515 chr2 243199373 + 8155556 8155821 L1PB1 5432 - 338 613 128614 84 0 6 37 1 5 64 1 0 4 0 1 74 chain 22228 chr2 243199373 + 8163095 8163431 THE1B 368 + 0 361 119215 39 1 16 117 1 0 26 35 45 105 0 1 12 chain 15996 chr2 243199373 + 8177130 8177399 THE1B 368 - 61 348 138362 58 50 69 11 1 0 149 chain 38639 chr2 243199373 + 8180923 8181353 L1PA2 6032 - 0 430 71236 430 chain 46748 chr2 243199373 + 8181353 8181854 L1PA2 6032 + 5097 5598 61413 501 chain 40167 chr2 243199373 + 8187476 8188022 MLT2A2 560 + 0 557 69084 128 6 2 213 4 6 46 7 18 59 0 2 83 chain 4114 chr2 243199373 + 8201583 8201725 MER63B 433 - 52 196 205726 40 80 82 22 chain 29756 chr2 243199373 + 8264049 8264366 AluYb8 318 - 1 318 85629 317 chain 416271 chr2 243199373 + 8267471 8272081 L1PA3long 6157 + 1531 6157 9631 245 0 1 231 1 2 806 0 7 348 0 1 791 0 2 1393 0 3 465 0 1 330 chain 14940 chr2 243199373 + 8285489 8285736 MSTA 426 - 0 270 141504 14 8 7 83 10 30 53 1 0 3 3 0 17 6 14 49 chain 392931 chr2 243199373 + 8320464 8324843 L1PA4 6152 + 1775 6151 10365 538 1 0 140 2 0 959 0 1 1959 1 0 779 chain 12960 chr2 243199373 + 8328771 8328992 MER1A 529 - 0 171 148394 113 51 1 57 chain 60682 chr2 243199373 + 8394203 8394952 MER4E1 777 + 0 770 52480 386 0 1 60 0 11 84 1 9 93 6 7 119 chain 20540 chr2 243199373 + 8509382 8509633 L1PA5 6144 - 6 257 125508 132 0 7 9 7 0 103 chain 99960 chr2 243199373 + 8525183 8526362 L1PA7 6471 - 17 1196 36787 833 1 0 28 0 1 317 chain 6765 chr2 243199373 + 8563877 8563956 MER96B 391 + 95 174 179213 79 chain 57509 chr2 243199373 + 8574642 8575311 L1PA7 6471 - 4 678 54230 363 0 2 301 0 3 5 chain 43938 chr2 243199373 + 8586593 8587147 MER41A 554 - 8 554 64280 33 0 5 84 19 5 18 0 1 400 chain 28150 chr2 243199373 + 8616810 8617106 AluYb8 318 + 20 316 92462 296 chain 22796 chr2 243199373 + 8623577 8623937 THE1D 372 - 0 372 116597 122 61 72 17 0 1 160 chain 43251 chr2 243199373 + 8643880 8644424 MLT2A2 560 + 0 560 65117 139 0 4 262 0 12 143 chain 23029 chr2 243199373 + 8645204 8645469 L1PA5 6144 - 5 296 115494 68 0 26 197 chain 29822 chr2 243199373 + 8650225 8650579 THE1B 368 - 0 368 85367 199 1 0 110 0 15 44 chain 83169 chr2 243199373 + 8701215 8702135 L1PA4 6152 - 9 930 42264 668 0 1 252 chain 2984 chr2 243199373 + 8703765 8703797 L1MA10 1535 + 1471 1503 225369 32 chain 10254 chr2 243199373 + 8761206 8761333 MER41B 635 - 0 126 159356 113 1 0 13 chain 9527 chr2 243199373 + 8815065 8815396 MER1B 344 + 45 344 162944 11 10 11 14 7 11 39 69 70 57 22 0 9 58 42 35 chain 53546 chr2 243199373 + 8843708 8844378 PABL_A 660 - 0 660 56646 150 11 1 509 chain 24939 chr2 243199373 + 8852952 8853243 AluSg 306 + 4 296 105112 126 0 1 165 chain 19500 chr2 243199373 + 8903923 8904264 L1PB3 3668 + 3244 3562 128656 46 17 15 50 1 0 5 0 1 30 1 0 90 17 1 19 15 13 14 3 1 33 chain 24876 chr2 243199373 + 8996676 8996974 AluSz 310 - 2 300 105479 298 chain 21546 chr2 243199373 + 9000042 9000331 AluSg7 307 + 10 291 121982 65 2 1 47 7 4 105 10 6 53 chain 19399 chr2 243199373 + 9034086 9034323 L1PA7 6471 - 2 242 128952 11 0 2 140 0 1 86 chain 67117 chr2 243199373 + 9034788 9035761 LTR12D 1347 - 12 942 49609 55 0 6 192 8 7 27 0 3 23 4 0 85 1 0 101 1 2 68 48 0 60 19 13 19 24 0 106 1 32 131 chain 414009 chr2 243199373 + 9037458 9042449 HERV9-int 5642 - 818 5641 9698 14 1 2 89 5 0 709 0 1 81 1 0 51 0 2 1212 2 1 1552 1 0 4 162 0 311 1 0 627 1 0 167 chain 6138 chr2 243199373 + 9041183 9041341 HERV9-int 5642 - 4536 4614 184101 49 80 0 29 chain 63881 chr2 243199373 + 9042478 9043380 LTR12D 1347 - 0 942 51063 265 8 7 23 4 3 23 51 47 38 1 0 73 7 5 153 1 19 123 1 32 131 chain 29182 chr2 243199373 + 9045590 9045942 L1PA6 6164 + 5811 6162 88133 30 1 0 321 chain 149955 chr2 243199373 + 9052095 9054375 L1PB1 5432 + 3188 5362 24613 32 0 1 33 1 0 208 234 132 24 1 0 110 1 4 156 0 1 349 0 7 195 0 1 99 0 6 19 2 0 43 12 13 183 16 23 156 2 1 119 1 2 9 3 0 20 1 0 13 17 12 10 3 1 50 15 17 44 1 0 20 19 7 19 8 5 14 2 0 16 chain 46822 chr2 243199373 + 9069899 9071172 LTR30 714 + 0 703 61356 84 0 5 135 1 10 15 0 5 52 0 1 136 7 18 77 598 0 86 3 0 5 33 34 28 1 0 12 chain 35338 chr2 243199373 + 9070416 9070802 L1PA4 6152 - 206 593 75755 127 0 1 259 chain 17355 chr2 243199373 + 9070802 9070992 L1PA4 6152 + 5950 6140 134641 190 chain 65424 chr2 243199373 + 9071183 9072097 L1PA8A 6298 - 478 1340 50369 74 0 1 62 1 3 6 0 1 144 63 1 29 7 10 115 0 2 316 7 8 90 chain 4327 chr2 243199373 + 9071471 9071520 MSTA 426 - 95 144 202861 49 chain 6200 chr2 243199373 + 9081569 9081646 MER3 215 + 33 113 183582 28 0 3 49 chain 495090 chr2 243199373 + 9108057 9113652 L1PA5 6144 + 3 6138 7116 86 0 525 1018 0 8 552 1 3 351 0 1 95 1 0 528 2 0 33 1 2 310 4 10 2613 chain 6982 chr2 243199373 + 9163466 9163655 L1PB1 5432 + 5236 5422 177593 28 67 69 13 2 0 23 2 1 22 1 0 12 1 0 18 chain 549494 chr2 243199373 + 9178460 9184609 L1PA4 6152 + 3 6152 1518 159 5 6 408 1 0 464 1 0 4763 1 2 347 chain 17651 chr2 243199373 + 9191016 9191282 L1PA16 3655 - 77 342 133838 127 1 0 78 0 4 6 29 25 25 chain 21403 chr2 243199373 + 9191796 9192078 AluSg7 307 - 21 307 122500 131 3 6 7 3 0 12 1 2 107 0 3 18 chain 2316 chr2 243199373 + 9214227 9214293 MIR3 191 - 68 133 235145 5 1 0 15 3 0 5 16 19 21 chain 24458 chr2 243199373 + 9254877 9255229 THE1B 368 + 2 368 107765 42 1 16 25 0 4 83 5 4 16 2 0 28 2 1 73 1 0 74 chain 6298 chr2 243199373 + 9265112 9265199 MLT1C 463 + 2 86 182814 18 3 0 66 chain 3306 chr2 243199373 + 9272211 9272249 LTR49 580 - 18 56 218849 38 chain 33476 chr2 243199373 + 9272852 9273314 MER1A 529 - 0 492 78448 44 2 29 8 6 0 102 0 9 162 3 0 5 4 7 126 chain 84200 chr2 243199373 + 9273561 9274577 MER11A 1151 - 0 1151 41821 179 0 1 86 0 23 23 1 0 157 2 3 132 0 7 8 0 3 234 1 3 138 0 99 55 chain 4624 chr2 243199373 + 9274577 9274635 LTR48B 642 - 484 542 199368 58 chain 24517 chr2 243199373 + 9283916 9284225 AluSx 319 + 0 304 107459 56 5 1 76 1 0 171 chain 3357 chr2 243199373 + 9298624 9298660 MER41B 635 - 88 124 217934 36 chain 5461 chr2 243199373 + 9308162 9308231 MER41B 635 - 0 69 190407 69 chain 45635 chr2 243199373 + 9309331 9309972 MER41B 635 - 0 635 62368 50 1 0 19 12 17 69 25 23 190 0 1 79 10 0 57 1 2 128 chain 24818 chr2 243199373 + 9323124 9323462 THE1B 368 + 0 368 105782 104 0 17 48 1 0 43 1 5 15 3 11 41 0 2 82 chain 10043 chr2 243199373 + 9338063 9338207 THE1B 368 - 223 368 160363 22 17 18 105 chain 29286 chr2 243199373 + 9342309 9342622 AluYb8 318 + 0 314 87634 152 0 1 161 chain 4375 chr2 243199373 + 9394000 9394054 MER44A 345 + 92 154 202265 9 0 8 45 chain 118897 chr2 243199373 + 9412007 9414401 L1MA2 4263 - 172 1863 31456 33 7 0 93 22 20 144 9 6 85 0 2 46 1 0 75 11 7 243 22 28 226 0 5 71 0 1 93 4 5 256 0 1 4 8 5 90 701 0 18 9 8 52 11 12 40 0 2 20 chain 51435 chr2 243199373 + 9413554 9414249 LTR8 732 - 0 730 58014 34 3 0 155 1 0 4 10 12 199 0 33 94 1 0 51 1 6 142 chain 7349 chr2 243199373 + 9425162 9425253 MLT1A 405 + 60 151 175101 91 chain 5897 chr2 243199373 + 9523721 9523793 LTR8A 794 - 508 580 186208 72 chain 39333 chr2 243199373 + 9523829 9524302 L1PA5 6144 + 5673 6144 70275 43 3 1 427 chain 24712 chr2 243199373 + 9561544 9561833 AluY 311 + 10 300 106374 122 8 9 159 chain 6074 chr2 243199373 + 9585523 9585596 L1MB5 1630 - 692 765 184622 73 chain 33976 chr2 243199373 + 9654240 9654635 L1PA5 6144 + 5737 6126 77650 152 1 2 110 8 1 124 chain 22361 chr2 243199373 + 9686841 9687124 AluSc 308 - 13 297 118663 141 14 15 128 chain 4385 chr2 243199373 + 9702597 9702654 L1MD3 1191 - 147 202 202137 42 2 0 13 chain 40816 chr2 243199373 + 9761839 9762322 L1PA7 6471 + 5983 6470 68153 148 0 1 208 0 1 115 0 2 12 chain 75894 chr2 243199373 + 9791115 9792008 L1PA5 6144 + 5245 6144 45550 21 1 6 22 1 0 658 1 3 189 chain 13998 chr2 243199373 + 9814592 9814762 L1PA4 6152 + 5981 6152 144585 162 0 1 8 chain 7247 chr2 243199373 + 9836151 9836441 LTR32 486 - 133 426 175788 5 2 0 15 13 48 34 1 15 36 89 87 30 7 0 8 36 1 14 chain 3444 chr2 243199373 + 9860649 9860687 MER58A 224 - 141 179 216299 38 chain 13296 chr2 243199373 + 9866183 9866327 L1PA2 6032 + 5878 6022 147095 144 chain 4870 chr2 243199373 + 9890456 9890517 MIR 256 + 84 145 196589 61 chain 29792 chr2 243199373 + 9959255 9959573 AluYb8 318 - 0 318 85491 318 chain 102122 chr2 243199373 + 9973624 9975357 L1MA2 4263 + 2620 4051 36229 24 3 1 24 2 4 232 6 7 37 0 1 234 5 39 351 2 0 10 2 0 4 2 0 70 6 5 37 340 14 82 22 19 141 11 9 86 chain 547356 chr2 243199373 + 10001091 10007217 L1PA4 6152 + 1 6143 1785 432 0 1 646 0 3 141 1 0 20 1 0 204 0 1 651 2 0 1224 0 9 1305 0 5 671 5 6 823 chain 4616 chr2 243199373 + 10014231 10014285 THE1B 368 - 60 114 199451 54 chain 521756 chr2 243199373 + 10067004 10073417 L1PA6 6164 - 2 6164 4989 10 3 0 52 0 2 82 0 1 693 0 4 101 0 4 558 0 5 750 0 1 8 326 0 27 0 1 217 1 0 26 1 0 55 5 6 255 0 7 21 0 2 83 1 2 259 0 12 307 4 0 52 1 0 37 0 2 187 1 3 574 0 1 77 0 1 27 2 0 195 0 2 17 7 8 604 0 17 53 0 1 556 0 14 127 0 5 51 chain 26496 chr2 243199373 + 10109971 10110271 AluYk4 311 - 12 311 98062 173 1 0 126 chain 21896 chr2 243199373 + 10117958 10118320 THE1B 368 - 0 368 120647 56 7 6 64 54 58 6 0 2 59 7 8 109 chain 22934 chr2 243199373 + 10124002 10124301 AluSq2 311 + 0 295 115941 63 0 2 67 0 2 92 8 0 69 chain 3682 chr2 243199373 + 10140549 10140592 MIR 256 - 103 146 212193 43 chain 7092 chr2 243199373 + 10145950 10146339 LTR12D 1347 - 259 846 176821 5 1 0 30 8 7 20 208 258 28 7 89 42 26 94 14 chain 16035 chr2 243199373 + 10226366 10226698 MSTA 426 + 0 386 138266 54 2 0 50 4 25 10 6 9 39 0 1 6 71 82 15 6 26 69 chain 19346 chr2 243199373 + 10232015 10232298 LTR12C 1709 + 773 1180 129088 64 1 0 39 0 78 99 26 73 54 chain 3207 chr2 243199373 + 10232446 10232481 LTR12C 1709 + 683 718 220795 35 chain 20247 chr2 243199373 + 10265556 10265825 AluY 311 + 6 299 126387 125 0 12 80 1 25 39 12 0 12 chain 13916 chr2 243199373 + 10296263 10296466 MER30 238 - 0 238 144869 105 5 28 6 6 0 62 3 21 16 chain 25404 chr2 243199373 + 10297139 10297435 AluYb8 318 - 3 297 102666 252 2 0 42 chain 3056 chr2 243199373 + 10330896 10331012 HAL1-2a_MD 234 - 6 213 223897 6 3 0 18 3 0 8 16 83 17 27 57 18 chain 21972 chr2 243199373 + 10346127 10346388 AluY 311 + 37 299 120345 95 0 1 166 chain 6499 chr2 243199373 + 10353795 10353871 LTR5_Hs 974 + 0 78 181254 19 0 2 57 chain 7115 chr2 243199373 + 10354202 10354280 LTR5_Hs 974 - 896 974 176652 78 chain 40075 chr2 243199373 + 10362843 10363394 MER41A 554 + 0 554 69218 42 5 1 118 0 4 154 10 7 70 1 2 28 0 1 17 5 4 20 0 5 81 chain 40566 chr2 243199373 + 10403718 10404197 L1PA5 6144 + 5666 6141 68483 335 8 1 124 1 4 11 chain 22611 chr2 243199373 + 10415915 10416203 AluSc 308 + 18 308 117531 90 6 7 89 0 1 103 chain 6304 chr2 243199373 + 10416209 10416305 MER41B 635 - 504 620 182765 13 1 27 21 6 0 55 chain 13404 chr2 243199373 + 10436316 10436482 MER41B 635 - 468 635 146693 40 0 1 126 chain 21859 chr2 243199373 + 10460378 10460729 MSTA 426 + 1 405 120783 97 14 39 69 2 0 5 4 10 15 2 0 12 13 19 29 1 21 88 chain 25894 chr2 243199373 + 10489552 10489857 AluY 311 + 1 311 100465 73 0 4 54 0 1 178 chain 3903 chr2 243199373 + 10502194 10502242 MIRb 242 - 121 169 208798 48 chain 19854 chr2 243199373 + 10504712 10504981 AluJb 308 - 10 279 127641 91 2 1 94 9 10 73 chain 31321 chr2 243199373 + 10597198 10597640 MLT2A1 477 - 0 477 81955 44 26 48 210 2 6 26 0 1 94 7 15 33 chain 23943 chr2 243199373 + 10678252 10678553 AluSq2 311 + 5 300 110663 129 1 0 160 5 0 6 chain 6570 chr2 243199373 + 10708593 10708666 AluY 311 + 26 99 180693 73 chain 6135 chr2 243199373 + 10719839 10719909 MER41A 554 + 396 466 184130 70 chain 33058 chr2 243199373 + 10736325 10736800 MER1A 529 - 10 486 79122 30 0 2 16 37 22 68 0 1 283 5 18 36 chain 16335 chr2 243199373 + 10744065 10744389 MER1B 344 - 5 344 137382 57 24 33 82 9 10 23 8 13 29 12 16 35 22 18 23 chain 11287 chr2 243199373 + 10764300 10764427 SVA_E 1901 - 0 127 155102 127 chain 23622 chr2 243199373 + 10767534 10767834 AluY 311 + 15 299 112453 117 0 1 157 17 0 9 chain 23478 chr2 243199373 + 10809736 10810017 AluSc 308 + 0 280 113225 8 1 0 272 chain 29210 chr2 243199373 + 10838581 10838892 AluYb8 318 - 7 318 88001 311 chain 68661 chr2 243199373 + 10944401 10945148 L1PA2 6032 - 1106 1857 48876 696 0 4 51 chain 90771 chr2 243199373 + 10945148 10946129 L1PA2 6032 + 4980 5962 39369 39 0 1 942 chain 4899 chr2 243199373 + 10949297 10949387 MER33 330 + 224 322 196274 22 5 4 38 7 16 18 chain 32859 chr2 243199373 + 10964981 10965482 MLT2A1 477 + 0 476 79439 167 6 3 25 3 1 175 75 55 50 chain 34025 chr2 243199373 + 10990239 10991525 MER4A 717 + 0 711 77584 13 12 12 4 0 1 16 4 5 209 1 13 40 0 1 52 0 40 47 756 131 18 7 1 39 8 9 60 chain 12646 chr2 243199373 + 11022293 11022441 AluSp 311 - 7 155 149651 148 chain 22850 chr2 243199373 + 11036959 11037286 THE1B 368 + 0 342 116344 44 0 15 48 4 5 60 1 0 27 15 13 22 0 2 106 chain 144755 chr2 243199373 + 11042072 11043982 SVA_F 1814 - 3 1814 25360 8 3 0 5 0 1 710 0 1 6 10 37 4 0 1 75 0 15 67 0 1 19 146 0 80 0 120 183 116 0 478 chain 9027 chr2 243199373 + 11042979 11043125 SVA_F 1814 - 903 993 123388 30 0 1 25 1 0 4 83 27 3 chain 4183 chr2 243199373 + 11043039 11043083 SVA_F 1814 - 674 718 155350 44 chain 3672 chr2 243199373 + 11043083 11043122 SVA_F 1814 - 909 949 173956 24 0 1 15 chain 1378 chr2 243199373 + 11043388 11043430 SVA_F 1814 - 1140 1185 175764 9 1 4 32 chain 2122 chr2 243199373 + 11043479 11043504 SVA_F 1814 - 718 743 205116 25 chain 6490 chr2 243199373 + 11044838 11045127 MLT1A 405 - 94 405 181330 23 20 19 7 0 2 25 121 147 42 32 27 19 chain 3349 chr2 243199373 + 11073959 11073997 L1MB5 1630 - 240 278 218063 38 chain 37068 chr2 243199373 + 11085288 11085745 L1PA7 6471 - 7 456 73432 17 7 0 82 3 1 51 1 2 296 chain 12820 chr2 243199373 + 11090343 11090499 THE1D 372 + 0 160 148978 128 0 4 28 chain 3850 chr2 243199373 + 11104791 11104860 LTR16C 481 + 394 465 209647 25 15 17 29 chain 29481 chr2 243199373 + 11114657 11115051 MSTA 426 - 12 418 86702 97 9 17 79 0 3 192 2 3 15 chain 24622 chr2 243199373 + 11129734 11130090 THE1D 372 + 1 360 106874 40 0 1 145 35 38 115 1 0 20 chain 567163 chr2 243199373 + 11136231 11142262 L1HS 6032 - 0 6032 79 1137 0 1 4894 chain 13122 chr2 243199373 + 11147660 11147812 L1PA3long 6157 + 5998 6150 147762 152 chain 11209 chr2 243199373 + 11148835 11148961 L1PA5 6144 + 6009 6135 155388 126 chain 229913 chr2 243199373 + 11175363 11178623 L1PB3 3668 - 382 3665 17310 45 0 1 158 14 82 12 2 0 129 1 0 22 1 0 5 3 8 159 1 0 103 0 1 404 73 63 595 15 12 259 0 1 7 8 0 14 3 2 13 0 1 144 2 1 65 5 7 89 1 2 380 7 1 16 4 2 6 0 2 338 3 0 5 9 6 14 8 1 35 17 11 12 2 0 31 7 5 14 chain 38373 chr2 243199373 + 11206798 11207253 L1PA4 6152 - 9 464 71612 137 1 0 9 18 19 290 chain 4303 chr2 243199373 + 11211039 11211088 LTR17 781 - 457 506 203178 49 chain 8954 chr2 243199373 + 11211114 11211233 LTR17 781 + 182 292 165858 42 9 0 68 chain 2493 chr2 243199373 + 11255681 11255716 L1MB1 2102 + 1972 2007 233191 23 0 1 4 1 0 7 chain 27987 chr2 243199373 + 11258463 11258804 THE1A 353 - 12 353 93050 51 0 1 179 1 0 110 chain 40932 chr2 243199373 + 11262257 11262790 MER41A 554 - 0 554 67998 79 1 6 41 0 1 290 14 29 108 chain 5897 chr2 243199373 + 11286317 11286471 MIR 256 - 65 229 186205 35 17 40 7 9 0 46 28 24 12 chain 10786 chr2 243199373 + 11291584 11291737 LTR8 732 - 0 161 157049 66 0 13 71 6 1 10 chain 119919 chr2 243199373 + 11304661 11306135 SVA_C 1631 - 5 1574 31084 16 12 6 418 0 3 103 0 1 49 0 137 29 1 0 13 4 0 83 0 1 46 79 0 31 6 9 72 0 40 512 chain 5546 chr2 243199373 + 11305435 11305514 SVA_C 1631 - 987 1066 132376 79 chain 29066 chr2 243199373 + 11316651 11316953 AluYa5 310 - 8 310 88693 302 chain 24687 chr2 243199373 + 11328229 11328535 AluSg7 307 - 4 307 106514 24 3 1 146 0 1 67 2 0 64 chain 23843 chr2 243199373 + 11356839 11357137 AluSg7 307 - 8 297 111232 16 10 0 151 0 1 121 chain 21385 chr2 243199373 + 11360160 11360441 AluSp 311 - 30 310 122569 52 13 12 97 1 0 77 0 1 41 chain 95635 chr2 243199373 + 11391631 11393062 L1PA7 6471 + 5301 6452 37921 141 0 1 178 1 0 77 0 2 139 12 13 61 290 0 436 0 7 96 chain 25926 chr2 243199373 + 11402554 11402911 THE1B 368 + 0 368 100313 44 0 6 6 0 9 74 6 3 24 9 6 26 0 2 168 chain 24478 chr2 243199373 + 11417481 11417960 L1PB1 5432 - 12 464 107664 16 1 0 13 1 0 19 5 4 19 7 6 11 1 0 4 3 1 18 16 7 6 3 0 15 1 0 44 1 0 16 2 1 53 15 9 11 1 0 9 1 0 24 1 0 7 5 4 87 0 2 20 0 3 23 chain 11201 chr2 243199373 + 11422541 11423045 L1MC1 2226 + 833 1394 155416 32 14 14 101 320 377 37 chain 28854 chr2 243199373 + 11423404 11423711 AluYb8 318 + 0 306 89655 132 1 0 174 chain 10500 chr2 243199373 + 11449327 11449464 MER2 342 + 158 295 158246 137 chain 189454 chr2 243199373 + 11457743 11459903 L1PA5 6144 - 0 2177 20101 359 9 12 478 0 4 16 0 4 82 0 4 172 5 3 665 0 4 374 chain 40179 chr2 243199373 + 11468759 11469199 L1PA3long 6157 + 5713 6153 69066 440 chain 27484 chr2 243199373 + 11539134 11539547 MSTA-int 1630 + 1215 1625 94703 74 0 1 26 10 11 21 14 16 84 0 1 38 5 1 27 1 0 42 8 4 59 0 1 4 chain 32781 chr2 243199373 + 11566352 11566766 MER48 407 + 0 407 79561 87 8 1 319 chain 35573 chr2 243199373 + 11573287 11573740 L1PA8 5853 - 0 446 75446 92 2 1 16 6 5 50 2 1 9 1 0 71 2 0 46 1 0 155 chain 102373 chr2 243199373 + 11582108 11583591 THE1C-int 1605 - 6 1605 36174 421 23 18 55 0 12 129 7 22 105 7 10 76 16 10 16 26 16 10 16 45 20 0 1 60 0 5 82 1 0 33 6 13 48 0 6 51 1 7 53 1 2 48 0 1 32 6 59 118 2 1 14 chain 20214 chr2 243199373 + 11605076 11605333 AluSp 311 + 57 311 126486 16 3 0 238 chain 37483 chr2 243199373 + 11610399 11610939 MLT2A2 560 - 0 560 72838 147 3 14 53 7 39 124 2 0 121 1 0 20 26 6 36 chain 10501 chr2 243199373 + 11611414 11611608 MSTD 398 - 70 398 158242 12 0 1 69 48 181 65 chain 10161 chr2 243199373 + 11662360 11662500 MER85 139 + 0 139 159794 96 10 9 34 chain 2625 chr2 243199373 + 11673478 11673596 MIRb 242 - 57 175 231350 26 76 76 16 chain 5795 chr2 243199373 + 11691832 11691898 tRNA-Glu-GAG_ 72 + 6 72 187209 66 chain 28340 chr2 243199373 + 11692855 11693152 AluYg6 310 + 0 297 91796 297 chain 4881 chr2 243199373 + 11701323 11701376 U2 167 + 0 53 196460 53 chain 9605 chr2 243199373 + 11701790 11701899 5S 121 - 6 115 162570 109 chain 16693 chr2 243199373 + 11724905 11725098 7SLRNA 320 + 7 200 136425 193 chain 10998 chr2 243199373 + 11764864 11765015 MER30 238 + 30 196 156214 78 4 19 69 chain 21971 chr2 243199373 + 11784022 11784407 MSTB 430 - 23 430 120349 35 0 6 7 0 1 53 1 6 5 1 0 23 24 30 29 4 11 64 35 33 10 1 0 87 0 1 6 chain 10291 chr2 243199373 + 11785888 11786032 L1MA3 4352 - 440 579 159173 13 7 0 79 0 1 41 0 1 4 chain 16580 chr2 243199373 + 11821381 11821731 MSTA 426 + 0 405 136711 21 1 0 76 20 64 12 2 0 30 72 66 27 2 22 87 chain 4032 chr2 243199373 + 11825631 11825677 MER57F 435 + 389 435 206896 46 chain 15774 chr2 243199373 + 11836223 11836420 L1PA8A 6298 - 20 218 139043 92 1 2 104 chain 17904 chr2 243199373 + 11869215 11869439 L1PA8 5853 + 5632 5853 133090 47 1 0 61 2 1 19 1 0 93 chain 80077 chr2 243199373 + 11871202 11872244 L1PA8 5853 - 2 1039 43553 91 1 0 12 0 1 6 2 1 52 8 6 80 0 1 37 1 0 313 0 5 151 4 1 22 10 13 50 3 0 10 4 0 185 chain 114623 chr2 243199373 + 11877207 11878521 L1PA7 6471 + 5156 6470 32916 67 0 1 397 2 0 517 0 1 331 chain 28611 chr2 243199373 + 11892559 11892856 AluYa5 310 - 13 310 90690 297 chain 136008 chr2 243199373 + 11899333 11900841 SVA_C 1631 - 26 1613 26833 563 0 87 45 1 0 54 4 0 323 2 0 324 0 1 154 4 0 9 0 6 15 4 0 6 chain 32276 chr2 243199373 + 11956887 11957302 L1PA8 5853 - 0 406 80399 93 1 0 19 2 1 52 2 0 9 1 0 71 2 0 44 1 0 103 1 0 14 chain 173499 chr2 243199373 + 11984430 11986398 L1PA5 6144 - 9 1984 21651 152 12 12 5 1 0 65 1 0 600 0 4 663 0 5 469 chain 6258 chr2 243199373 + 11986398 11986464 L1PA5 6144 + 4110 4176 183103 66 chain 20199 chr2 243199373 + 12000209 12000495 THE1B 368 - 68 368 126530 98 0 2 38 1 0 58 23 36 68 chain 545459 chr2 243199373 + 12021596 12027729 L1PA4 6152 - 5 6152 2018 142 1 0 703 0 4 356 0 6 584 0 4 1349 0 1 10 7 0 280 0 5 1663 1 0 559 0 3 478 chain 22241 chr2 243199373 + 12034451 12034812 THE1B 368 + 0 368 119164 108 7 9 59 0 2 6 30 25 4 0 1 10 11 19 63 7 6 56 chain 44464 chr2 243199373 + 12040641 12041189 MER41A 554 + 0 554 63620 93 0 1 222 6 5 109 0 1 38 0 5 80 chain 11088 chr2 243199373 + 12066227 12066495 L1PB1 5432 - 10 260 155856 18 5 4 8 1 0 22 1 0 8 0 1 15 22 20 18 17 6 6 1 0 15 2 0 40 23 21 41 0 2 5 chain 5187 chr2 243199373 + 12088142 12088200 L1MA5A 2387 - 95 153 193176 58 chain 91416 chr2 243199373 + 12099744 12100949 L1PA11 4918 + 3298 4504 39162 220 0 3 174 0 3 203 3 7 82 1 0 323 13 12 25 2 0 43 2 1 53 1 0 28 2 0 13 2 1 15 chain 5982 chr2 243199373 + 12131901 12131973 MSTB 430 + 358 430 185413 72 chain 20522 chr2 243199373 + 12193969 12194268 THE1B 368 - 58 361 125561 4 1 0 66 1 0 10 1 0 16 1 5 9 0 1 4 7 5 21 1 0 129 0 5 28 chain 20854 chr2 243199373 + 12221154 12221411 AluY 311 + 49 311 124441 58 0 2 23 0 1 131 0 2 45 chain 43372 chr2 243199373 + 12223994 12224621 MER41B 635 + 0 635 64968 123 3 4 293 1 0 5 4 5 21 17 16 44 3 5 33 7 13 5 1 0 26 0 1 41 chain 411373 chr2 243199373 + 12274230 12279734 L1PA7 6471 - 1 6466 9763 11 1 3 141 1 0 7 0 1 312 0 4 67 0 1 220 0 1 40 1 0 22 0 1 18 2 1 76 0 4 318 49 30 242 4 5 213 0 665 55 1 0 90 0 1 85 2 0 7 5 2 164 0 1 165 1 0 11 8 4 737 0 5 99 1 2 77 8 10 913 10 9 164 11 9 217 6 5 167 1 22 50 5 6 87 35 110 57 9 19 105 12 13 12 5 5 20 42 243 108 15 14 192 chain 32377 chr2 243199373 + 12306231 12306666 MLT2A1 477 - 0 477 80226 6 0 4 17 0 1 20 6 44 181 0 1 23 0 1 10 5 2 167 chain 13248 chr2 243199373 + 12370790 12370994 MER30 238 - 0 196 147294 39 3 0 10 7 0 50 7 0 15 7 16 66 chain 24376 chr2 243199373 + 12388750 12389061 AluSp 311 + 0 303 108212 40 1 0 241 7 0 22 chain 12506 chr2 243199373 + 12407165 12407323 L1PA7 6471 - 1 160 150223 12 1 2 145 chain 3795 chr2 243199373 + 12423917 12423965 L1MB5 1630 + 463 511 210455 48 chain 51711 chr2 243199373 + 12432587 12433209 L1PA7 6471 + 5844 6470 57810 86 1 0 31 0 1 39 0 2 134 0 1 175 0 1 156 chain 41603 chr2 243199373 + 12446238 12446849 L1PA16 3655 + 3025 3619 67150 176 1 0 52 1 0 131 8 19 175 3 0 14 11 0 4 7 0 7 5 0 16 chain 12310 chr2 243199373 + 12454991 12455141 MLT1A 405 - 0 152 150972 77 0 1 47 0 1 26 chain 35167 chr2 243199373 + 12486310 12486687 L1HS 6032 - 2 379 75955 377 chain 8055 chr2 243199373 + 12486687 12486780 L1P1 4361 + 4236 4328 170725 69 1 0 23 chain 29772 chr2 243199373 + 12500625 12500936 AluYb8 318 + 2 313 85573 311 chain 17643 chr2 243199373 + 12522725 12522997 L1PA8 5853 + 5587 5853 133866 23 2 0 60 16 15 5 1 0 54 1 0 12 5 4 93 chain 3002 chr2 243199373 + 12523365 12523397 L1MC4 1079 - 617 649 224993 32 chain 22605 chr2 243199373 + 12524607 12524879 AluY 311 + 38 311 117567 94 0 1 178 chain 68968 chr2 243199373 + 12550655 12551523 L1PA8A 6298 - 10 883 48823 99 5 6 461 12 10 142 0 2 99 2 6 48 chain 6594 chr2 243199373 + 12559673 12559754 MER58B 340 + 141 222 180509 81 chain 34937 chr2 243199373 + 12562354 12562754 L1PA4 6152 - 9 408 76280 331 1 0 68 chain 35109 chr2 243199373 + 12587830 12588397 L1PB1 5432 + 4738 5301 76036 149 1 0 6 0 1 4 3 4 4 1 0 55 0 4 30 3 2 83 0 3 20 8 9 5 3 0 17 1 0 13 2 1 10 5 1 10 3 1 50 2 1 16 1 0 23 3 0 13 0 7 16 2 0 5 chain 58609 chr2 243199373 + 12632040 12632674 L1PA2 6032 - 388 1022 53635 634 chain 35831 chr2 243199373 + 12632674 12633059 L1PA2 6032 + 5647 6032 75090 385 chain 29574 chr2 243199373 + 12637061 12637494 MLT2A1 477 - 62 477 86304 15 1 0 8 18 0 7 8 2 89 0 1 47 0 8 34 0 1 23 0 1 8 3 0 8 6 5 158 chain 77811 chr2 243199373 + 12651885 12652894 L1PA7 6471 - 4 1128 44612 34 9 0 6 0 9 13 0 1 244 0 1 148 5 7 5 2 0 306 11 14 45 7 10 45 1 108 128 chain 553405 chr2 243199373 + 12661880 12667897 L1PA2 6032 - 9 6028 1018 135 0 3 2746 1 0 1319 1 0 1235 0 1 328 1 0 183 0 1 68 chain 13278 chr2 243199373 + 12667897 12668053 L1PA7 6471 - 323 479 147177 156 chain 15427 chr2 243199373 + 12668063 12668267 L1PA7 6471 + 6259 6463 140108 46 3 5 6 2 0 147 chain 20890 chr2 243199373 + 12708425 12708694 AluSc8 310 + 37 301 124321 95 0 3 103 8 0 63 chain 28090 chr2 243199373 + 12709805 12710235 LTR7Y 441 + 0 441 92683 103 9 0 57 68 84 74 0 2 23 0 2 96 chain 294815 chr2 243199373 + 12710235 12713917 HERVH-int 3825 + 0 3825 13714 532 69 0 38 1 0 9 2 1 7 0 1 2 66 0 13 7 1 15 1 0 12 3 41 26 2 1 24 8 7 49 1 0 662 0 1 107 0 1 135 4 31 449 1 0 53 0 1 25 0 1 41 0 2 72 0 3 290 1 0 439 0 3 25 8 218 247 11 15 225 chain 2816 chr2 243199373 + 12710792 12710832 HERVH-int 3825 + 552 590 228525 18 1 0 10 1 0 10 chain 5855 chr2 243199373 + 12710895 12710959 HERVH-int 3825 + 471 535 165801 64 chain 28187 chr2 243199373 + 12715132 12715565 LTR7Y 441 + 0 441 92348 103 9 0 57 68 84 79 0 1 105 0 2 5 2 0 5 chain 20739 chr2 243199373 + 12731861 12732223 THE1C 375 - 12 375 124822 14 1 0 11 12 13 75 5 4 12 50 52 182 chain 11468 chr2 243199373 + 12739383 12739523 MLT1B 390 + 230 370 154439 140 chain 16550 chr2 243199373 + 12756639 12756993 THE1B 368 - 10 368 136796 29 24 23 63 11 19 10 41 37 42 32 33 102 chain 23013 chr2 243199373 + 12764726 12765010 MER4E1 777 - 490 776 115564 176 0 1 51 0 1 57 chain 38960 chr2 243199373 + 12766460 12766902 LTR7 482 + 0 473 70788 247 1 32 194 chain 296946 chr2 243199373 + 12766913 12770666 HERVH-int 3825 + 0 3825 13591 33 5 21 438 61 0 40 5 0 38 1 0 10 1 0 7 5 0 16 68 1 15 1 0 12 3 0 7 23 0 19 22 0 11 0 21 28 22 1 11 2 1 23 5 5 21 1 0 36 0 1 625 0 1 243 4 31 284 0 4 1116 8 218 116 0 1 256 0 3 111 chain 39039 chr2 243199373 + 12771925 12772383 LTR7 482 + 0 482 70678 181 7 0 70 0 31 200 chain 45921 chr2 243199373 + 12773238 12773792 MER41A 554 - 0 554 62112 554 chain 21759 chr2 243199373 + 12786365 12786694 THE1B 368 - 15 368 121175 104 13 21 14 0 1 4 10 11 30 1 0 102 7 22 44 chain 27033 chr2 243199373 + 12820248 12820603 THE1B 368 - 0 368 96168 75 1 0 121 8 7 105 1 16 44 chain 9216 chr2 243199373 + 12920622 12920722 L1PA4 6152 - 22 122 164474 100 chain 10249 chr2 243199373 + 12920744 12920858 L1PA4 6152 + 5921 6037 159372 79 0 2 35 chain 118450 chr2 243199373 + 12925353 12926944 THE1B-int 1605 - 18 1578 31631 236 24 25 695 4 1 176 0 26 15 1 0 317 73 19 50 chain 84871 chr2 243199373 + 12929595 12930555 L1PA4 6152 - 7 969 41564 140 1 0 83 0 4 624 1 0 111 chain 93374 chr2 243199373 + 12932873 12933974 L1PA7 6471 + 5354 6466 38544 267 1 0 440 2 0 35 0 1 184 0 13 172 chain 3848 chr2 243199373 + 12989605 12989646 MSTD 398 + 337 378 209661 41 chain 28814 chr2 243199373 + 12993470 12993896 LTR12C 1709 - 672 1059 89827 40 48 11 149 1 0 167 1 0 20 chain 5782 chr2 243199373 + 12993911 12994060 LTR12C 1709 - 677 826 128716 149 chain 9925 chr2 243199373 + 13014199 13014320 MER50 708 - 25 146 160948 121 chain 28556 chr2 243199373 + 13016262 13016566 AluYa5 310 - 6 310 90935 304 chain 91555 chr2 243199373 + 13018577 13019626 L1PA7 6471 - 19 1116 39112 131 0 47 659 0 1 259 chain 36684 chr2 243199373 + 13066744 13067198 LTR12C 1709 - 1212 1707 73978 23 12 10 83 0 43 336 chain 41585 chr2 243199373 + 13067491 13067934 L1HS 6032 + 5586 6029 67178 443 chain 4438 chr2 243199373 + 13108635 13108710 MADE1 96 + 0 91 201474 23 16 32 36 chain 117320 chr2 243199373 + 13112936 13114478 THE1A-int 1579 - 5 1579 32018 4 0 1 156 0 1 268 0 3 5 9 6 235 1 26 78 1 2 75 5 6 79 0 1 63 0 1 55 11 9 60 0 2 140 9 12 5 2 0 281 chain 6602 chr2 243199373 + 13138603 13138683 MSTA 426 - 328 408 180433 80 chain 134319 chr2 243199373 + 13184212 13186090 L1PA8A 6298 + 3951 5851 27146 23 28 29 39 0 5 24 0 1 336 11 12 22 1 0 5 4 5 166 23 27 50 0 1 132 11 11 104 6 8 20 0 1 4 1 0 281 0 1 16 0 1 84 0 2 127 0 2 269 8 9 83 chain 27273 chr2 243199373 + 13201061 13201383 L1PA5 6144 + 5822 6144 95360 322 chain 9982 chr2 243199373 + 13205138 13205264 MER85 139 - 3 139 160667 37 0 10 89 chain 15807 chr2 243199373 + 13213051 13213263 THE1C-int 1605 - 7 226 138938 27 4 3 4 0 1 26 0 7 151 chain 9503 chr2 243199373 + 13213263 13213385 THE1C 375 - 122 245 162690 12 0 1 110 chain 3733 chr2 243199373 + 13277561 13277640 MER33 330 - 185 262 211418 20 13 12 20 2 0 5 0 1 19 chain 75081 chr2 243199373 + 13280622 13281483 L1PA5 6144 - 16 868 45979 128 7 0 706 2 0 18 chain 29821 chr2 243199373 + 13303891 13304343 LTR7B 505 - 10 505 85369 41 14 13 54 0 1 24 1 0 39 0 1 40 0 2 28 37 68 68 1 11 105 chain 16508 chr2 243199373 + 13305382 13305572 HERVH-int 3825 - 849 1042 136893 35 0 3 155 chain 289886 chr2 243199373 + 13305811 13309386 HERVH-int 3825 - 0 3825 14028 225 0 2 103 0 2 155 8 218 818 1 0 158 0 4 130 0 4 290 4 31 201 9 11 677 32 31 35 2 1 5 0 1 28 1 0 23 4 42 11 1 0 15 28 0 24 1 0 10 1 0 39 6 1 530 chain 28569 chr2 243199373 + 13309396 13309849 LTR7B 505 - 10 505 90871 38 17 16 54 0 1 21 1 0 36 2 7 24 5 0 16 0 2 28 34 27 12 0 38 59 1 11 105 chain 14930 chr2 243199373 + 13330931 13331098 L1PA4 6152 - 6 173 141538 167 chain 4068 chr2 243199373 + 13374267 13374313 MADE1 96 - 50 96 206351 46 chain 103030 chr2 243199373 + 13376225 13377422 L1PA4 6152 - 6 1162 35980 674 43 2 480 chain 213967 chr2 243199373 + 13411276 13413645 L1PA3long 6157 - 0 2371 18230 339 6 5 164 0 2 785 0 1 226 1 0 609 0 1 239 chain 30236 chr2 243199373 + 13461596 13462019 MER4E1 777 + 0 423 84096 9 1 2 13 4 0 62 4 5 106 0 3 141 3 2 80 chain 3648 chr2 243199373 + 13490218 13490260 L1PA13 3608 - 165 207 212828 42 chain 53395 chr2 243199373 + 13504065 13504792 L1PA8 5853 + 5138 5853 56763 67 9 5 84 0 1 269 1 0 10 9 6 25 5 3 70 14 13 49 2 1 19 1 0 93 chain 453965 chr2 243199373 + 13561937 13567765 L1PA8 5853 - 30 5803 8615 60 7 6 16 2 1 46 1 0 14 2 1 71 2 0 46 1 0 35 6 7 511 2 0 75 5 6 248 0 1 274 58 34 279 8 1 207 0 1 24 1 0 380 0 1 91 2 1 395 1 0 63 0 5 35 0 1 869 3 0 111 0 2 246 0 26 15 1 0 248 1 0 271 0 1 77 0 2 137 0 3 217 1 0 360 12 0 194 49 13 13 1 0 10 2 0 22 chain 105385 chr2 243199373 + 13571843 13573394 THE1B-int 1605 - 0 1579 35402 229 29 34 45 0 3 266 7 8 4 1 0 305 22 23 206 7 6 15 32 95 90 23 25 63 0 3 70 46 0 38 4 0 12 0 2 37 chain 136605 chr2 243199373 + 13579860 13581462 L1PA5 6144 - 3 1602 26713 164 8 7 165 2 0 511 1 0 380 0 1 371 chain 70034 chr2 243199373 + 13581462 13582232 L1PA5 6144 + 3642 4413 48340 495 0 1 275 chain 117153 chr2 243199373 + 13612137 13613422 L1PA3long 6157 - 15 1300 32071 1285 chain 18654 chr2 243199373 + 13631439 13631649 L1PA3long 6157 - 5 215 131077 210 chain 3953 chr2 243199373 + 13635652 13635715 MADE1 96 - 9 95 208091 36 5 28 22 chain 40725 chr2 243199373 + 13656234 13656690 L1PA3long 6157 - 0 456 68274 17 1 0 321 0 1 117 chain 37870 chr2 243199373 + 13666080 13666542 LTR2 463 - 0 463 72319 88 12 13 362 chain 425792 chr2 243199373 + 13666551 13671656 Harlequin-int 5206 - 9 5072 9402 707 0 1 771 2 1 41 4 0 1414 7 6 204 0 2 471 1 8 278 2 1 110 17 1 166 3 4 529 3 0 108 7 0 74 0 1 5 3 0 5 36 21 124 3 0 10 chain 36035 chr2 243199373 + 13673221 13673734 LTR2 463 - 0 463 74854 88 15 16 71 55 0 108 0 4 176 chain 14359 chr2 243199373 + 13677841 13678221 THE1D 372 + 0 372 143344 55 40 31 43 130 132 42 1 0 69 chain 33239 chr2 243199373 + 13707252 13707611 L1PA2 6032 - 543 902 78817 359 chain 51301 chr2 243199373 + 13707624 13708181 L1PA2 6032 + 5472 6029 58111 557 chain 88912 chr2 243199373 + 13720609 13721602 L1PA4 6152 - 1 998 40041 849 0 4 144 chain 13381 chr2 243199373 + 13722654 13722812 L1PA4 6152 + 5985 6140 146779 78 3 0 77 chain 28491 chr2 243199373 + 13734806 13735169 THE1B 368 - 6 368 91219 189 2 1 172 chain 42995 chr2 243199373 + 13750639 13751144 L1PA6 6164 + 5660 6162 65418 496 3 0 6 chain 42412 chr2 243199373 + 13759273 13759764 L1PA5 6144 + 5653 6144 66132 491 chain 38075 chr2 243199373 + 13767041 13767467 L1PA3long 6157 - 12 436 72024 74 3 1 349 chain 76088 chr2 243199373 + 13774062 13774915 L1PA4 6152 - 2 854 45378 475 1 0 377 chain 152318 chr2 243199373 + 13774915 13776590 L1PA4 6152 + 3618 5294 24299 401 0 1 1274 chain 120277 chr2 243199373 + 13781497 13782865 L1PA3long 6157 - 0 1388 30950 548 8 7 165 0 1 129 1 0 47 1 22 469 chain 19579 chr2 243199373 + 13794429 13794652 L1PA4 6152 - 11 234 128433 223 chain 20288 chr2 243199373 + 13820479 13820717 HERVIP10FH-int 2884 + 159 399 126261 29 0 1 19 0 1 190 chain 13797 chr2 243199373 + 13826950 13827135 HUERS-P3b-int 2065 + 19 202 145282 75 3 0 81 0 1 26 chain 23896 chr2 243199373 + 13840069 13840459 THE1D 372 + 0 372 110923 75 19 0 91 40 42 29 10 9 126 chain 8226 chr2 243199373 + 13846456 13846580 MER85 139 - 0 134 169801 40 13 23 71 chain 107911 chr2 243199373 + 13858592 13859802 L1PA4 6152 - 0 1212 34714 406 0 1 443 0 1 361 chain 114618 chr2 243199373 + 13859802 13861116 L1P1 4361 + 2926 4249 32919 239 1 0 13 0 1 347 3 13 612 1 0 98 chain 538865 chr2 243199373 + 13873398 13879409 L1PA3long 6157 - 0 6156 3011 464 1 11 374 0 1 2604 0 3 1108 0 1 685 7 135 243 0 4 371 0 1 145 3 0 6 chain 317162 chr2 243199373 + 13885005 13889108 L1P3 4156 + 5 4137 12718 227 30 29 60 1 0 89 1 0 196 0 1 384 19 36 348 1 2 239 8 7 123 1 0 88 0 1 253 5 9 511 28 22 325 0 1 77 0 16 559 4 1 220 0 4 148 0 1 125 2 0 7 2 1 22 chain 78672 chr2 243199373 + 13890006 13890875 L1PA3long 6157 + 5287 6157 44203 715 0 1 154 chain 100378 chr2 243199373 + 13947167 13948262 L1PA3long 6157 - 1922 3018 36614 290 0 1 805 chain 174066 chr2 243199373 + 13948262 13950176 L1PA3long 6157 + 4227 6144 21585 135 0 4 275 1 0 1503 chain 5579 chr2 243199373 + 13964766 13964842 MLT1E2 623 + 48 123 189294 17 1 0 58 chain 5774 chr2 243199373 + 13970499 13970567 L1PA11 4918 - 2491 2560 187402 34 0 1 34 chain 72642 chr2 243199373 + 13982682 13983829 L1PB1 5432 + 4296 5412 47198 330 3 0 77 0 2 91 8 0 8 3 11 168 3 1 117 3 4 5 2 0 4 1 0 24 1 0 9 1 0 9 6 2 9 2 0 40 0 1 12 2 1 10 10 9 41 1 0 15 1 0 4 8 6 6 5 0 15 24 19 24 1 0 21 1 0 13 1 0 8 chain 17189 chr2 243199373 + 13989629 13989838 L1PA8 5853 - 712 918 135063 134 3 0 72 chain 51550 chr2 243199373 + 13989845 13990487 L1PA8 5853 + 5210 5853 57926 236 0 1 115 1 0 46 2 0 69 1 0 10 2 1 52 2 1 19 1 0 7 0 7 79 chain 116008 chr2 243199373 + 14007291 14008569 L1PA3long 6157 + 4879 6157 32454 1278 chain 27336 chr2 243199373 + 14013865 14014253 MLT2A1 477 - 92 477 95159 79 13 12 89 1 2 20 0 1 13 9 1 147 0 4 17 chain 61281 chr2 243199373 + 14022700 14023372 L1PA3long 6157 + 5485 6157 52216 672 chain 9435 chr2 243199373 + 14032325 14032450 L1MA5 2750 - 682 803 163380 15 4 0 106 chain 181868 chr2 243199373 + 14050094 14052104 L1PA3long 6157 + 4109 6157 20797 1050 0 5 734 1 0 113 0 34 112 chain 18411 chr2 243199373 + 14065830 14066215 MER57-int 2662 + 55 349 131745 15 43 29 9 1 0 5 0 1 70 75 0 129 2 0 36 chain 23261 chr2 243199373 + 14071314 14071636 AluY 311 + 9 307 114378 117 31 0 62 0 3 77 0 4 35 chain 29501 chr2 243199373 + 14073727 14074045 L1PA3long 6157 + 5574 5892 86637 318 chain 24071 chr2 243199373 + 14074046 14074312 L1PA3long 6157 + 5892 6157 109922 123 1 0 142 chain 4815 chr2 243199373 + 14075303 14075360 L1MC 810 - 75 132 197167 57 chain 95859 chr2 243199373 + 14086622 14087682 L1PA3long 6157 - 0 1060 37856 1060 chain 70413 chr2 243199373 + 14091605 14092369 L1PA4 6152 - 6 770 48207 764 chain 62260 chr2 243199373 + 14092369 14093059 L1PA4 6152 + 4704 5393 51703 597 1 0 92 chain 49164 chr2 243199373 + 14138451 14139039 L1PA7 6471 + 5865 6461 59622 146 0 6 121 0 1 189 0 1 132 chain 3891 chr2 243199373 + 14146717 14146801 MLT1A0 366 + 205 288 209014 23 30 29 31 chain 54959 chr2 243199373 + 14171580 14172250 L1PA7 6471 - 57 730 55731 90 5 6 261 1 0 198 0 3 115 chain 62263 chr2 243199373 + 14184055 14184740 L1PA3long 6157 - 0 685 51773 685 chain 29670 chr2 243199373 + 14185172 14185550 MLT2A1 477 + 4 381 85956 165 4 1 9 0 1 23 0 1 9 0 1 76 1 0 91 chain 9346 chr2 243199373 + 14209714 14210022 LTR47A 437 + 21 385 163827 40 42 101 12 40 32 21 71 76 82 chain 471926 chr2 243199373 + 14221946 14227876 L1PA7 6471 + 3 6469 7973 236 0 3 58 7 1 102 0 2 453 1 37 171 6 7 26 0 1 256 1 0 232 2 1 32 3 5 422 1 5 180 3 2 140 0 3 142 0 2 56 1 3 38 0 1 19 11 0 340 0 2 5 2 0 67 5 1 392 8 491 52 43 24 354 0 35 83 0 1 32 1 3 464 1 0 63 1 0 4 0 1 280 1 0 288 1 0 88 0 1 38 0 1 387 0 1 171 10 11 150 chain 539615 chr2 243199373 + 14239258 14245416 L1PA4 6152 + 2 6151 2878 578 1 0 254 17 0 600 1 0 873 0 1 383 4 8 1755 0 3 1068 0 1 151 0 1 473 chain 2861 chr2 243199373 + 14258327 14258360 MER2 342 + 133 166 227658 33 chain 22441 chr2 243199373 + 14273359 14273718 THE1B 368 - 0 368 118290 125 35 45 29 1 0 76 9 6 44 1 6 22 2 0 15 chain 14972 chr2 243199373 + 14290272 14290440 L1PA3long 6157 + 5988 6156 141407 168 chain 106572 chr2 243199373 + 14298611 14299843 L1PA5 6144 - 1096 2329 35098 76 0 1 77 2 1 140 1 0 307 0 1 71 0 1 558 chain 84540 chr2 243199373 + 14299843 14300823 L1PA5 6144 + 5158 6141 41675 286 1 3 365 0 1 328 chain 77852 chr2 243199373 + 14315498 14316483 L1PA6 6164 + 5226 6161 44590 89 2 0 169 43 2 551 5 0 117 2 0 7 chain 4029 chr2 243199373 + 14323541 14323623 MER52D 1964 + 1108 1237 206951 43 22 69 17 chain 21462 chr2 243199373 + 14345849 14346089 L1PA3long 6157 - 254 493 122292 213 1 0 26 chain 23172 chr2 243199373 + 14346091 14346364 L1PA3long 6157 + 5883 6157 114803 20 1 2 252 chain 66679 chr2 243199373 + 14351991 14352733 L1PA3long 6157 + 5405 6148 49796 79 0 1 663 chain 3640 chr2 243199373 + 14373606 14373647 LTR16A2 485 - 16 57 212972 41 chain 21463 chr2 243199373 + 14387053 14387328 L1PA7 6471 + 4668 4947 122281 30 1 2 162 0 3 82 chain 41034 chr2 243199373 + 14387342 14387838 L1PA7 6471 + 4947 5443 67852 496 chain 21957 chr2 243199373 + 14387839 14388097 L1PA7 6471 + 5443 5700 120397 179 2 0 11 0 1 66 chain 65160 chr2 243199373 + 14388097 14388864 L1PA7 6471 + 5702 6470 50494 520 5 6 242 chain 5819 chr2 243199373 + 14414594 14414668 Tigger2a 444 + 134 208 186972 74 chain 7057 chr2 243199373 + 14438344 14438456 MER57A1 433 - 0 111 177056 62 11 10 39 chain 20394 chr2 243199373 + 14466740 14467075 L1PA8 5853 - 8 337 125910 84 2 1 19 17 16 37 11 10 70 9 7 36 2 1 48 chain 5607 chr2 243199373 + 14472696 14472773 MER96B 391 + 45 121 189018 71 1 0 5 chain 33939 chr2 243199373 + 14476359 14476958 MLT2A2 560 + 1 560 77717 190 15 16 32 10 74 192 106 1 54 chain 3025 chr2 243199373 + 14486216 14486259 MLT2A1 477 + 435 477 224481 23 2 1 18 chain 9346 chr2 243199373 + 14495550 14495719 LTR48B 642 + 29 192 163828 33 10 0 19 14 17 74 5 6 14 chain 87321 chr2 243199373 + 14502024 14503093 MER11B 1079 - 15 1079 40640 76 0 1 221 6 0 171 1 0 197 6 4 86 0 1 48 3 0 29 0 5 225 chain 239953 chr2 243199373 + 14519074 14521783 L1PA4 6152 + 3422 6141 16781 241 0 1 622 0 2 63 0 4 622 0 1 238 0 1 821 0 1 102 chain 16862 chr2 243199373 + 14535744 14536162 L1PA5 6144 + 5923 6142 135932 122 210 11 86 chain 400399 chr2 243199373 + 14548902 14554281 L1PB1 5432 + 77 5424 10085 77 9 10 237 1 0 144 2 0 8 0 1 9 3 0 5 0 3 288 1 2 191 0 1 180 2 1 19 0 3 138 2 1 7 2 0 7 12 1 460 0 1 195 1 0 4 5 6 19 1 0 72 5 15 85 6 9 149 1 7 8 6 0 111 15 3 28 0 5 255 1 0 22 0 3 24 0 3 121 1 0 267 0 2 318 31 32 98 1 0 223 1 0 7 0 1 9 0 1 586 8 7 61 8 6 169 6 4 297 1 0 11 1 0 20 1 0 13 1 0 9 6 2 62 2 1 16 1 0 35 0 3 5 1 0 16 3 0 12 9 0 19 11 8 11 2 0 27 1 0 18 1 0 13 1 0 16 1 0 4 chain 36650 chr2 243199373 + 14566402 14566799 L1PA4 6152 + 5608 6005 74024 397 chain 11933 chr2 243199373 + 14566799 14566933 L1PA4 6152 + 6009 6143 152467 134 chain 81746 chr2 243199373 + 14579079 14579996 L1PA5 6144 + 5226 6143 42873 917 chain 241074 chr2 243199373 + 14628888 14631550 L1PA3long 6157 - 7 2675 16715 141 1 0 695 0 4 136 2 0 525 0 2 151 0 1 285 0 2 726 chain 44209 chr2 243199373 + 14631550 14632038 L1PA3long 6157 + 2982 3470 63935 488 chain 25260 chr2 243199373 + 14635741 14636039 AluY 311 + 9 307 103414 298 chain 557499 chr2 243199373 + 14641576 14647732 L1PA3long 6157 - 0 6157 556 857 1 0 2609 0 1 2594 0 1 95 chain 22955 chr2 243199373 + 14658223 14658485 L1PA7 6471 - 17 279 115826 262 chain 31172 chr2 243199373 + 14684713 14685220 MER1A 529 - 21 529 82217 34 10 13 5 3 0 359 79 80 17 chain 22213 chr2 243199373 + 14724449 14724730 AluSc5 308 + 10 297 119288 47 3 9 231 chain 3588 chr2 243199373 + 14746747 14746787 MLT2A1 477 + 436 476 213864 40 chain 22888 chr2 243199373 + 14762689 14762977 THE1A-int 1579 - 6 297 116153 11 1 0 159 0 4 117 chain 4799 chr2 243199373 + 14763025 14763103 MLT1A 405 + 298 377 197367 13 11 12 54 chain 5440 chr2 243199373 + 14781044 14781199 MER53 195 + 8 159 190605 56 74 71 4 1 0 20 chain 31355 chr2 243199373 + 14802059 14802402 L1PA2 6032 - 852 1195 81586 343 chain 79645 chr2 243199373 + 14802402 14803261 L1PA2 6032 + 5171 6032 43757 707 0 2 152 chain 13936 chr2 243199373 + 14820365 14820558 L1PA8 5853 + 5664 5853 144801 14 2 1 9 1 0 52 2 1 19 1 0 93 chain 39511 chr2 243199373 + 14822705 14823200 MLT2A2 560 - 54 560 70009 93 0 11 402 chain 64558 chr2 243199373 + 14829548 14830273 L1PA4 6152 + 5415 6143 50773 64 0 1 211 0 2 450 chain 87549 chr2 243199373 + 14831282 14832401 MER11A 1151 - 0 1151 40552 13 1 2 16 0 12 23 1 0 194 6 7 21 21 28 276 1 0 170 0 1 60 0 2 21 0 11 66 1 0 228 chain 45534 chr2 243199373 + 14888578 14889073 L1PA3long 6157 + 5478 5973 62475 495 chain 9432 chr2 243199373 + 14896776 14896996 L1PB1 5432 - 164 368 163395 31 19 17 53 31 24 5 1 0 24 1 0 7 5 4 20 5 1 18 chain 555202 chr2 243199373 + 14923448 14929601 L1PA3long 6157 - 2 6151 803 847 0 4 427 1 0 1182 1 0 1300 0 1 1199 0 1 325 8 7 94 7 0 762 chain 23727 chr2 243199373 + 14931002 14931278 AluSp 311 - 35 311 111896 276 chain 7836 chr2 243199373 + 14933036 14933394 MLT1A 405 + 48 388 172096 17 86 84 17 145 130 41 1 0 51 chain 16924 chr2 243199373 + 14936988 14937245 AluY 311 + 72 307 135785 51 1 0 3 14 0 104 17 11 20 0 1 40 2 0 5 chain 47480 chr2 243199373 + 14942662 14943176 L1PA2 6032 + 5518 6032 60852 514 chain 26054 chr2 243199373 + 14950376 14950712 THE1B 368 + 0 350 99812 44 0 15 110 1 0 125 1 0 5 0 2 7 1 0 42 chain 553909 chr2 243199373 + 14988188 14994202 L1PA2 6032 + 0 6025 959 316 0 1 424 0 1 470 4 0 710 0 2 2510 0 10 514 0 1 1066 chain 34325 chr2 243199373 + 14996260 14996976 L1M1 2793 + 666 1349 77173 36 92 70 30 1 0 27 93 87 14 9 7 44 23 22 175 1 0 95 2 0 50 0 2 24 chain 37015 chr2 243199373 + 15003365 15003813 LTR7C 471 - 22 471 73498 84 0 1 61 1 0 4 0 1 298 chain 3634 chr2 243199373 + 15013323 15013372 LTR12D 1347 - 694 780 213096 32 0 37 17 chain 15549 chr2 243199373 + 15054094 15054385 THE1B 368 - 62 368 139737 26 0 8 32 72 78 44 10 11 107 chain 20683 chr2 243199373 + 15089666 15090007 L1MA4 2864 + 2381 2683 125027 110 49 12 127 2 3 42 3 0 8 chain 16788 chr2 243199373 + 15090161 15090504 L1PB1 5432 - 12 322 136137 16 5 4 9 1 0 21 1 0 24 2 0 14 13 10 10 5 0 9 4 0 7 3 0 16 1 0 43 1 0 16 2 1 12 1 0 41 2 0 9 16 11 9 1 0 24 1 0 4 chain 23304 chr2 243199373 + 15094648 15095017 THE1C 375 - 0 372 114180 51 8 10 116 12 8 7 0 4 84 30 31 61 chain 23360 chr2 243199373 + 15096610 15096985 THE1C 375 - 0 375 113874 168 0 2 5 12 7 11 0 3 48 24 23 22 15 16 70 chain 26628 chr2 243199373 + 15112204 15112533 L1PA8A 6298 + 5960 6291 97562 179 0 2 150 chain 18571 chr2 243199373 + 15129462 15129710 AluSz 310 + 63 297 131301 226 14 0 8 chain 24587 chr2 243199373 + 15135194 15135474 L1PA4 6152 - 9 289 107053 280 chain 116569 chr2 243199373 + 15141748 15143223 LTR12C 1709 - 0 1709 32268 63 1 132 38 1 0 4 38 9 22 0 1 212 0 4 106 3 1 5 1 0 38 0 2 85 4 0 1 0 159 173 26 0 654 chain 36639 chr2 243199373 + 15155500 15156171 L1MA5A 2387 + 19 665 74045 29 2 0 9 129 102 22 3 0 16 7 5 10 1 0 193 5 6 66 0 12 28 3 0 148 chain 30336 chr2 243199373 + 15166298 15166615 AluYb9 318 + 0 317 83828 317 chain 14030 chr2 243199373 + 15166615 15166784 L1PREC2 3366 - 1365 1534 144460 169 chain 22168 chr2 243199373 + 15197575 15198009 L1PB1 5432 - 8 417 119506 4 1 0 16 1 0 9 0 3 22 1 0 24 2 0 6 16 13 19 18 8 4 1 0 59 1 0 16 2 1 53 30 24 5 1 0 21 5 0 8 4 9 85 chain 18919 chr2 243199373 + 15198026 15198266 L1PB1 5432 + 4774 5014 130317 240 chain 22337 chr2 243199373 + 15217154 15217481 THE1D 372 - 0 341 118751 148 50 64 129 chain 13928 chr2 243199373 + 15231417 15231596 Tigger2a 444 + 23 208 144828 63 1 7 115 chain 19563 chr2 243199373 + 15235358 15235710 THE1B 368 - 12 368 128482 113 75 77 48 11 12 58 5 6 42 chain 30021 chr2 243199373 + 15244674 15245072 L1PA7 6471 - 499 899 84739 269 2 1 53 11 10 15 1 5 47 chain 37964 chr2 243199373 + 15245085 15245531 L1PA7 6471 + 6015 6459 72184 79 2 0 365 chain 18598 chr2 243199373 + 15265721 15265966 MSTB-int 1649 + 1282 1531 131237 227 5 9 13 chain 15142 chr2 243199373 + 15275891 15276088 MER30 238 - 0 201 140937 119 10 14 68 chain 28615 chr2 243199373 + 15283771 15284143 MLT2A1 477 + 0 372 90678 87 0 1 81 4 1 10 1 2 23 0 1 166 chain 41948 chr2 243199373 + 15344643 15345143 L1PA5 6144 + 5643 6144 66687 49 0 1 451 chain 14051 chr2 243199373 + 15348021 15348194 L1MA2 4263 + 631 802 144377 137 2 0 34 chain 84387 chr2 243199373 + 15359445 15360415 SVA_E 1901 - 0 1040 41758 8 3 0 615 3 53 52 6 6 65 19 45 4 0 1 125 4 0 66 chain 327512 chr2 243199373 + 15387348 15391554 L1PA7 6471 + 2293 6433 12292 229 0 1 36 4 24 47 2 4 121 135 43 91 16 20 324 0 4 6 4 0 157 2 0 49 6 0 131 0 4 14 11 4 155 0 4 153 0 1 13 7 10 66 7 0 508 1 2 110 0 1 41 1 5 125 0 1 85 3 0 63 5 4 668 1 4 82 0 1 179 0 1 260 0 1 288 chain 75893 chr2 243199373 + 15398177 15399205 MER11A 1151 + 0 1151 45552 55 0 99 47 3 8 23 1 0 53 13 9 31 0 2 61 0 1 11 11 6 37 0 1 94 0 1 134 14 17 115 6 31 26 3 0 223 8 7 59 chain 23916 chr2 243199373 + 15423445 15423801 THE1C 375 + 20 375 110836 162 4 5 41 7 9 10 7 1 36 8 10 81 chain 41460 chr2 243199373 + 15442780 15443331 MLT2A2 560 + 0 560 67335 399 3 14 44 17 15 88 chain 22490 chr2 243199373 + 15448765 15449014 L1P1 4361 - 199 447 118062 12 1 0 236 chain 12147 chr2 243199373 + 15449014 15449148 L1PA3long 6157 + 6018 6152 151626 134 chain 518463 chr2 243199373 + 15456376 15462508 L1PA6 6164 + 0 6151 5331 250 2 1 18 1 0 298 1 0 119 0 1 56 0 1 643 0 4 55 1 0 506 0 2 189 1 0 14 0 1 173 2 0 186 0 1 186 1 2 363 1 2 113 5 6 81 0 1 102 0 1 168 0 2 158 3 0 803 1 5 804 1 0 53 0 5 131 0 3 90 1 0 199 0 2 353 chain 5771 chr2 243199373 + 15477492 15477575 L1PB1 5432 + 5349 5427 187429 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 224171 chr2 243199373 + 15484401 15487236 L1PA8A 6298 + 3446 6291 17642 106 2 3 51 7 3 35 1 0 230 1 2 146 6 7 126 1 5 366 14 18 64 0 1 30 0 1 59 4 3 29 2 0 437 1 0 129 0 1 191 0 2 54 0 3 115 2 1 268 0 1 358 chain 30886 chr2 243199373 + 15510727 15511107 THE1D-int 1627 + 1238 1627 82708 110 0 1 100 0 4 138 0 3 23 0 1 9 chain 16079 chr2 243199373 + 15543564 15543832 MER2 342 + 87 339 138115 22 2 1 127 2 3 52 36 20 27 chain 5064 chr2 243199373 + 15568412 15568486 MER3 215 + 136 215 194493 4 1 0 16 1 7 52 chain 554308 chr2 243199373 + 15579625 15585789 L1PA3long 6157 + 0 6157 909 18 33 17 1127 0 3 1578 3 8 944 0 1 2461 chain 27773 chr2 243199373 + 15609221 15609533 L1P1 4361 - 1113 1425 93786 312 chain 49972 chr2 243199373 + 15609533 15610106 L1PA5 6144 + 5556 6129 59037 573 chain 7509 chr2 243199373 + 15622942 15623035 MER39 703 + 592 685 174114 93 chain 8190 chr2 243199373 + 15624555 15624651 MER85 139 + 0 96 170006 96 chain 8210 chr2 243199373 + 15638935 15639046 MSTA 426 + 258 390 169888 35 2 23 74 chain 24078 chr2 243199373 + 15658794 15659144 THE1B 368 - 0 355 109884 63 16 18 68 6 5 20 0 2 24 3 0 123 0 5 27 chain 76243 chr2 243199373 + 15681880 15682745 SVA_D 2077 + 903 2056 45339 13 0 36 42 1 0 40 9 10 50 1 0 9 0 78 51 0 176 38 1 0 610 chain 15734 chr2 243199373 + 15712218 15712557 MER67B 652 + 134 488 139162 99 18 6 63 0 17 35 79 88 16 6 7 23 chain 6994 chr2 243199373 + 15712590 15712672 MER67A 545 + 435 517 177509 82 chain 30375 chr2 243199373 + 15714187 15714608 MLT2A1 477 - 0 476 83729 32 3 49 11 3 1 12 8 15 33 1 0 150 1 5 28 0 1 139 chain 18585 chr2 243199373 + 15726913 15727151 AluY 311 + 68 296 131270 169 15 5 54 chain 168276 chr2 243199373 + 15751021 15753178 SVA_D 2077 - 12 2073 22252 628 0 49 177 98 0 168 132 9 48 1 0 28 10 47 20 0 80 222 40 0 585 chain 3526 chr2 243199373 + 15751826 15751874 SVA_D 2077 - 993 1043 81051 46 0 2 2 chain 3032 chr2 243199373 + 15751874 15751924 SVA_D 2077 - 689 739 72696 50 chain 8003 chr2 243199373 + 15752092 15752224 SVA_D 2077 - 858 992 72696 105 4 0 6 0 6 17 chain 8209 chr2 243199373 + 15762315 15762435 L1MB3 1562 - 7 129 169903 12 0 4 15 1 0 85 1 0 6 chain 20120 chr2 243199373 + 15818654 15818941 L1PA7 6471 + 6184 6454 126770 98 13 5 19 1 0 17 9 1 130 chain 106616 chr2 243199373 + 15819999 15821169 SVA_D 2077 - 337 2035 35089 303 0 49 41 0 2 17 0 477 809 chain 3107 chr2 243199373 + 15836439 15836473 LTR12C 1709 - 991 1025 222794 34 chain 20000 chr2 243199373 + 15836486 15836725 LTR12C 1709 - 760 998 127150 112 1 0 126 chain 5618 chr2 243199373 + 15836763 15836827 LTR12C 1709 - 876 940 188902 64 chain 56038 chr2 243199373 + 15839536 15840313 L1PA8 5853 - 0 774 55097 93 1 0 19 2 1 52 11 9 69 0 3 43 1 0 169 2 1 101 0 1 4 13 12 197 chain 49359 chr2 243199373 + 15841600 15842287 MER50 708 - 5 708 59482 212 1 0 126 1 0 20 0 1 34 5 21 90 1 0 27 12 13 39 0 5 12 8 0 48 0 1 6 1 4 44 chain 24858 chr2 243199373 + 15843143 15843500 THE1A 353 - 0 353 105581 11 0 1 5 7 6 220 1 0 7 2 1 34 7 5 63 chain 29581 chr2 243199373 + 15850945 15851254 AluYa5 310 - 1 310 86265 309 chain 2587 chr2 243199373 + 15861606 15861684 MER94 134 - 1 38 231843 28 41 0 9 chain 15206 chr2 243199373 + 15867966 15868160 MER30 238 - 13 238 140761 94 4 25 72 0 10 24 chain 20593 chr2 243199373 + 15907517 15907831 AluSq2 311 + 0 300 125323 31 37 26 70 4 1 172 chain 118969 chr2 243199373 + 15914590 15915935 L1PA4 6152 - 0 1346 31429 910 0 1 435 chain 3168 chr2 243199373 + 15935258 15935297 MER5A1 166 + 26 65 221599 39 chain 2642 chr2 243199373 + 15970850 15970882 Ricksha_c 1012 - 540 571 231151 26 1 0 5 chain 3504 chr2 243199373 + 15975195 15975239 LTR16E1 515 + 471 515 215307 44 chain 23783 chr2 243199373 + 15988239 15988526 AluSg7 307 + 0 285 111577 15 2 0 270 chain 27288 chr2 243199373 + 15996920 15997217 AluYk4 311 + 0 298 95316 47 0 1 250 chain 79014 chr2 243199373 + 16017340 16018608 L1PA6 6164 + 4990 6159 44055 28 291 191 189 1 0 574 0 34 8 33 1 144 chain 18892 chr2 243199373 + 16022366 16022573 L1PA3long 6157 + 5950 6157 130391 207 chain 286424 chr2 243199373 + 16100486 16103742 L1PA5 6144 + 2872 6130 14263 306 0 2 40 0 1 64 1 0 122 1 0 275 0 1 975 8 7 473 0 1 691 0 1 160 1 0 139 chain 14053 chr2 243199373 + 16115260 16115452 MER30 238 + 0 237 144369 16 0 18 75 3 29 67 0 1 31 chain 24341 chr2 243199373 + 16165915 16166273 THE1B 368 - 0 355 108413 75 1 0 94 33 27 132 0 5 12 1 0 10 chain 43166 chr2 243199373 + 16192613 16193149 MLT2A2 560 - 0 558 65215 6 0 4 133 0 11 61 1 2 33 1 0 126 0 1 104 0 6 71 chain 21480 chr2 243199373 + 16197285 16197551 L1PA16 3655 - 77 343 122220 266 chain 26247 chr2 243199373 + 16214769 16215065 AluYf4 310 + 0 296 99029 296 chain 7563 chr2 243199373 + 16228270 16228359 L1PA16 3655 + 3486 3575 173777 89 chain 29344 chr2 243199373 + 16251116 16251429 AluYa5 310 - 0 310 87323 184 3 0 126 chain 44158 chr2 243199373 + 16272265 16272851 L1PB3 3668 + 2683 3272 64000 305 2 0 19 0 3 64 0 1 149 5 6 42 chain 29170 chr2 243199373 + 16273796 16274105 AluYg6 310 + 0 309 88199 309 chain 28187 chr2 243199373 + 16340724 16341022 AluYa5 310 - 12 310 92351 298 chain 491119 chr2 243199373 + 16411411 16416859 L1PA3long 6157 - 5 6157 7312 1387 22 0 2370 0 1 36 0 595 859 8 136 403 0 1 211 0 1 152 chain 3817 chr2 243199373 + 16480060 16480131 L1MC5 759 - 471 543 210131 15 14 15 42 chain 5973 chr2 243199373 + 16497237 16497311 MER20 218 - 58 132 185485 74 chain 5581 chr2 243199373 + 16558711 16558786 MER33 330 + 22 142 189268 63 0 45 12 chain 35824 chr2 243199373 + 16572688 16573281 L1PB1 5432 - 10 567 75101 4 1 0 10 5 4 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 25 12 15 1 0 44 1 0 16 2 1 52 2 0 9 5 1 10 2 1 9 1 0 23 3 0 10 5 6 59 1 0 175 chain 29146 chr2 243199373 + 16628692 16628999 AluYa5 310 - 3 310 88331 307 chain 29585 chr2 243199373 + 16629798 16630140 L1PA5 6144 - 0 339 86252 333 3 0 6 chain 20927 chr2 243199373 + 16671101 16671358 AluY 311 + 15 267 124186 118 6 1 133 chain 26133 chr2 243199373 + 16754806 16755162 THE1B 368 + 0 367 99470 41 1 16 112 1 0 22 2 1 153 7 5 17 chain 3710 chr2 243199373 + 16757181 16757231 THE1B 368 + 176 224 211797 24 2 0 24 chain 11534 chr2 243199373 + 16757235 16757377 THE1B 368 + 226 368 154171 142 chain 7410 chr2 243199373 + 16758071 16758173 L1MB1 2102 + 1886 1985 174701 30 1 0 26 0 1 5 3 0 37 chain 568167 chr2 243199373 + 16774993 16781026 L1HS 6032 - 0 6032 21 151 2 1 5880 chain 23417 chr2 243199373 + 16848344 16848638 AluSg4 309 - 8 301 113557 89 8 7 197 chain 66204 chr2 243199373 + 16862820 16863561 L1PA4 6152 - 5 746 50000 741 chain 20602 chr2 243199373 + 16877624 16878000 L1PB3 3668 - 859 1190 125288 24 8 9 110 1 0 60 7 5 6 1 0 45 0 9 10 56 5 48 chain 30661 chr2 243199373 + 16929215 16929650 MLT2A1 477 - 0 475 83104 38 19 56 179 6 7 17 0 1 9 4 1 148 0 4 15 chain 454296 chr2 243199373 + 16929652 16935237 HERVL-int 5654 - 0 5654 8602 289 0 1 20 0 14 557 6 0 13 0 6 12 0 6 298 0 1 148 0 27 296 0 2 685 0 1 180 0 1 203 0 2 90 2 11 1092 0 1 83 4 1 97 1 0 172 2 1 620 4 12 705 0 1 6 chain 29704 chr2 243199373 + 16935237 16935676 MLT2A1 477 - 0 472 85814 27 18 53 12 1 3 47 5 2 129 0 1 19 17 15 164 chain 26725 chr2 243199373 + 16961629 16961984 THE1B 368 + 0 368 97241 29 0 1 14 0 15 22 1 2 89 1 0 25 5 0 101 0 1 8 0 1 60 chain 29526 chr2 243199373 + 16973222 16973642 LTR7 482 - 12 482 86541 164 0 1 9 0 31 42 1 12 45 20 27 139 chain 296115 chr2 243199373 + 16974900 16978510 HERVH-int 3825 - 0 3799 13639 225 3 8 254 8 218 39 9 11 1354 4 31 63 0 1 398 15 0 442 0 3 13 0 2 6 0 1 57 2 1 42 0 37 15 29 0 24 1 0 10 1 0 38 5 0 30 61 0 124 0 2 10 0 1 142 0 11 186 chain 29587 chr2 243199373 + 16978551 16978970 LTR7 482 - 13 482 86247 163 0 1 43 0 2 5 4 44 44 21 28 139 chain 5609 chr2 243199373 + 16978970 16979040 THE1C 375 - 298 368 188995 70 chain 10689 chr2 243199373 + 16983012 16983157 MER11B 1079 + 900 1046 157458 16 1 2 5 1 0 107 0 1 15 chain 26460 chr2 243199373 + 16983238 16983563 LTR17 781 - 457 781 98206 15 10 0 181 8 17 111 chain 121406 chr2 243199373 + 16985408 16986972 THE1B-int 1605 - 0 1604 30563 260 0 9 378 2 3 277 0 2 154 9 10 56 1 26 410 6 8 11 chain 21170 chr2 243199373 + 16986973 16987287 THE1B 368 - 0 348 123311 47 7 15 68 0 26 15 4 0 23 5 4 86 1 0 19 0 1 22 0 5 17 chain 22877 chr2 243199373 + 16995289 16995636 THE1B 368 - 0 368 116203 63 1 5 108 2 0 5 11 10 56 15 20 42 0 15 44 chain 69716 chr2 243199373 + 17000720 17001526 L1PA7 6471 - 2 808 48516 10 2 0 143 0 1 247 0 1 404 chain 24902 chr2 243199373 + 17024544 17024841 L1PA8A 6298 - 7 304 105333 297 chain 83369 chr2 243199373 + 17040479 17041593 L1PA8 5853 - 0 1166 42169 92 10 33 26 18 17 6 1 0 71 2 0 46 1 0 103 11 53 170 7 9 140 1 0 70 16 7 323 chain 217714 chr2 243199373 + 17057271 17059655 L1PA3long 6157 - 15 2403 18020 834 5 9 1545 chain 107863 chr2 243199373 + 17059655 17060866 L1PA3long 6157 + 2559 3760 34703 576 8 0 35 2 1 91 2 1 497 chain 52052 chr2 243199373 + 17071456 17072172 Charlie3 2679 + 34 729 57593 25 10 14 40 23 6 110 8 0 489 0 1 4 1 0 6 chain 12015 chr2 243199373 + 17081936 17082087 LTR1 825 - 197 352 152134 10 0 4 141 chain 27732 chr2 243199373 + 17082162 17082611 HUERS-P2-int 2744 + 2315 2742 93929 62 1 0 62 0 2 69 3 1 33 1 0 4 2 0 31 2 1 11 1 0 6 6 4 15 1 0 42 6 0 27 22 17 13 2 0 27 chain 227434 chr2 243199373 + 17083479 17086513 HERVL-int 5654 - 2324 5253 17455 160 146 6 639 18 21 16 0 1 206 0 16 176 0 9 201 1 0 13 0 1 94 14 15 311 1 0 4 1 2 601 0 1 96 1 5 335 chain 10452 chr2 243199373 + 17083639 17083785 HERVL-int 5654 + 1710 1857 157539 46 14 15 86 chain 16026 chr2 243199373 + 17086543 17086719 L1PA5 6144 - 9 185 138289 176 chain 32691 chr2 243199373 + 17087135 17087562 MLT2A1 477 - 0 475 79702 37 6 55 180 0 1 24 0 1 9 4 1 167 chain 9835 chr2 243199373 + 17091908 17092056 L1PB4 2604 - 51 215 161416 23 0 11 41 11 16 73 chain 305315 chr2 243199373 + 17093482 17097292 HERVL-int 5654 + 1807 5654 13197 131 1 2 127 5 0 192 10 41 457 1 0 28 0 3 396 8 9 85 0 1 869 4 18 38 6 0 157 2 0 606 0 1 79 10 11 220 0 3 84 1 0 4 0 1 27 0 1 6 9 1 29 3 4 138 0 1 77 chain 9627 chr2 243199373 + 17097406 17097557 MLT2A1 477 + 283 477 162462 102 31 74 18 chain 13750 chr2 243199373 + 17098534 17098930 MER2 342 - 48 248 145437 73 199 0 24 8 11 92 chain 34571 chr2 243199373 + 17128734 17129203 MLT2A2 560 + 7 502 76792 148 1 0 14 32 48 185 0 11 89 chain 10220 chr2 243199373 + 17148459 17148599 MER85 139 + 0 139 159509 95 12 11 33 chain 6653 chr2 243199373 + 17152319 17152423 MSTA 426 + 77 205 180060 31 16 40 57 chain 153290 chr2 243199373 + 17177364 17179331 L1PA8 5853 - 0 1952 24187 16 0 1 75 2 1 16 1 0 30 2 0 5 8 10 8 1 0 12 1 0 69 2 0 48 1 0 60 0 1 417 0 2 73 1 3 97 0 1 658 34 12 224 0 7 106 chain 30592 chr2 243199373 + 17179338 17179705 L1PA8 5853 + 3531 3898 83212 367 chain 26616 chr2 243199373 + 17195815 17196262 L1PA15 4387 - 60 494 97614 12 3 1 41 20 17 39 2 1 11 35 31 43 1 0 27 1 0 171 1 0 40 chain 26663 chr2 243199373 + 17199735 17200016 AluYf4 310 + 16 297 97445 281 chain 16245 chr2 243199373 + 17203994 17204179 L1PA4 6152 - 9 198 137634 46 0 4 139 chain 11516 chr2 243199373 + 17213636 17213864 THE1D 372 - 5 242 154233 117 75 84 36 chain 97710 chr2 243199373 + 17247328 17248413 L1PA3long 6157 + 5070 6157 37366 663 0 1 280 0 1 142 chain 7764 chr2 243199373 + 17257033 17257162 L1PREC2 3366 + 2696 2819 172516 15 1 0 8 1 0 23 1 0 10 2 0 47 9 8 12 chain 22898 chr2 243199373 + 17259670 17260005 THE1C 375 + 1 333 116118 76 46 43 213 chain 21334 chr2 243199373 + 17261635 17261946 THE1C 375 + 0 311 122742 69 1 0 56 11 8 53 0 1 7 16 19 98 chain 39773 chr2 243199373 + 17270648 17271169 MLT2A2 560 - 0 560 69662 147 0 11 32 2 1 61 1 0 154 0 1 62 0 26 21 5 8 36 chain 19717 chr2 243199373 + 17311288 17311506 L1PA4 6152 - 921 1139 128047 218 chain 75337 chr2 243199373 + 17311535 17312447 L1PA4 6152 + 5252 6152 45854 673 32 0 50 12 29 132 0 3 13 chain 11581 chr2 243199373 + 17325132 17325378 L1PA16 3655 - 36 267 153974 16 5 0 7 19 0 19 9 6 48 30 42 93 chain 85484 chr2 243199373 + 17334121 17335094 L1PA5 6144 + 5154 6132 41351 52 0 1 90 0 4 831 chain 60878 chr2 243199373 + 17346751 17347485 L1PA7 6471 - 5 753 52397 7 2 0 53 0 9 65 0 1 103 2 9 356 1 0 145 chain 28098 chr2 243199373 + 17348555 17349082 L1PREC2 3366 + 2565 3048 92657 176 1 0 9 4 2 54 1 0 38 2 0 6 1 0 4 3 0 13 29 21 13 10 5 15 3 1 29 4 1 11 22 8 35 13 11 31 chain 113138 chr2 243199373 + 17374638 17376022 LTR12C 1709 + 0 1709 33340 338 0 43 269 0 278 111 0 1 32 0 2 38 1 0 5 3 1 96 10 14 481 chain 106504 chr2 243199373 + 17385862 17387105 L1PA6 6164 - 2 1240 35119 8 0 4 323 0 1 622 0 2 260 12 0 18 chain 32331 chr2 243199373 + 17465324 17466963 L1PB1 5432 + 4867 5427 80299 236 1046 2 9 3 0 24 1 0 11 1 0 7 2 0 3 2 0 9 2 0 15 0 1 36 2 1 52 8 7 16 14 1 30 31 26 17 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 83170 chr2 243199373 + 17471281 17472255 MER11C 1089 - 20 1089 42263 325 5 6 592 0 94 52 chain 3917 chr2 243199373 + 17480350 17480450 MER94 134 - 1 100 208594 35 41 40 24 chain 24692 chr2 243199373 + 17503231 17503592 THE1B 368 + 2 368 106491 167 1 0 21 7 10 10 1 5 27 1 0 66 1 0 26 19 20 14 chain 15474 chr2 243199373 + 17511551 17511771 MER30 238 - 12 238 139979 36 3 0 60 13 22 108 chain 31766 chr2 243199373 + 17517135 17517542 LTR7 482 + 0 476 81221 69 8 46 115 0 31 215 chain 60955 chr2 243199373 + 17520207 17520957 LTR17 781 + 0 781 52356 119 0 9 198 0 1 65 19 18 305 0 21 37 0 1 7 chain 375029 chr2 243199373 + 17522568 17526889 HERV17-int 4347 + 12 4347 10917 15 3 1 50 1 0 34 2 0 27 1 0 155 5 0 14 1 0 86 0 8 113 0 9 72 0 2 76 0 1 119 3 1 350 0 3 205 0 1 114 1 2 1302 0 1 977 1 0 5 0 1 6 0 2 583 chain 59086 chr2 243199373 + 17527203 17527973 LTR17 781 + 0 772 53341 111 8 17 166 12 4 29 0 1 61 1 0 312 17 18 53 chain 161343 chr2 243199373 + 17540831 17542687 L1PA7 6471 - 1662 3524 23141 958 0 4 236 0 1 526 0 1 136 chain 137582 chr2 243199373 + 17542687 17544356 L1PA7 6471 + 4810 6468 26531 14 2 1 140 9 7 18 1 2 629 1 0 643 2 0 44 17 18 135 7 0 7 chain 69027 chr2 243199373 + 17551149 17551918 L1PA3long 6157 - 5 777 48795 142 0 1 279 0 2 348 chain 93900 chr2 243199373 + 17551920 17552949 L1PA3long 6157 + 4332 5361 38384 1029 chain 27398 chr2 243199373 + 17553964 17554253 AluYa5 310 - 20 309 94978 289 chain 16267 chr2 243199373 + 17573898 17574110 L1PB1 5432 - 1801 2013 137555 212 chain 23149 chr2 243199373 + 17592785 17593140 THE1B 368 + 0 368 114895 44 1 16 114 2 1 101 37 36 56 chain 391907 chr2 243199373 + 17627570 17632985 L1PA8 5853 + 478 5853 10397 45 58 39 17 8 5 37 17 21 12 3 4 7 0 1 4 0 1 87 0 1 5 2 1 309 0 3 5 5 2 362 16 20 18 8 6 244 0 1 140 2 0 299 0 1 68 0 1 10 4 5 35 23 0 517 0 1 74 2 1 27 23 19 64 1 0 188 24 14 109 11 12 66 3 0 51 0 3 115 4 8 520 0 1 193 0 1 62 1 0 22 0 1 458 1 10 134 1 8 35 3 1 555 1 0 44 6 4 49 1 0 4 0 1 13 2 1 17 11 5 38 2 1 15 6 5 92 chain 14627 chr2 243199373 + 17637497 17637669 L1PA6 6164 + 5979 6151 142498 172 chain 78101 chr2 243199373 + 17637750 17638809 MER11C 1089 - 16 1089 44464 8 0 1 144 1 0 54 0 1 127 0 1 38 1 0 5 5 9 13 1 0 78 63 62 146 1 0 18 1 0 51 0 4 58 0 9 246 chain 60438 chr2 243199373 + 17645868 17646578 L1PA7 6471 - 1674 2373 52614 508 11 0 191 chain 139195 chr2 243199373 + 17646582 17648255 L1PA7 6471 + 4784 6461 26265 399 10 14 420 1 0 225 3 4 615 chain 16138 chr2 243199373 + 17665141 17665360 MER30 238 + 0 238 137942 95 11 30 113 chain 200798 chr2 243199373 + 17669880 17672377 L1PA7 6471 - 4 2705 19159 95 1 2 14 0 116 73 0 17 76 0 1 269 8 19 154 8 9 132 0 30 212 0 4 128 0 4 127 1 0 224 0 14 75 15 19 79 1 0 128 4 1 230 0 1 204 0 5 239 chain 68827 chr2 243199373 + 17674899 17675662 L1PA4 6152 - 9 772 48884 763 chain 3788 chr2 243199373 + 17678039 17678275 L2a 937 + 108 326 210537 37 174 156 25 chain 19109 chr2 243199373 + 17747015 17747345 THE1C 375 + 0 334 129795 64 0 2 21 3 4 11 10 16 57 43 39 100 6 5 15 chain 2747 chr2 243199373 + 17765273 17765308 MIRb 242 - 59 95 229522 14 0 1 21 chain 3704 chr2 243199373 + 17792472 17792527 MIR 256 - 109 164 211880 40 2 0 6 0 2 7 chain 10325 chr2 243199373 + 17870945 17871197 MER2 342 - 48 303 159010 14 22 31 56 2 0 57 78 74 23 chain 196787 chr2 243199373 + 17872715 17874962 L1PA4 6152 + 3870 6151 19440 24 1 3 305 0 2 145 0 8 699 0 1 484 1 0 56 0 6 161 0 6 236 0 7 112 0 6 15 3 0 5 chain 13008 chr2 243199373 + 17875141 17875294 AluSq2 311 + 158 311 148214 153 chain 3840 chr2 243199373 + 17927399 17927487 MLT1D 503 + 309 396 209787 36 34 33 18 chain 11879 chr2 243199373 + 17933453 17933639 MER2 342 - 48 239 152699 64 19 28 88 4 0 11 chain 51743 chr2 243199373 + 17978104 17978678 L1PA5 6144 + 5576 6144 57791 229 6 0 339 chain 38336 chr2 243199373 + 17995391 17996001 L1PB3 3668 + 2987 3565 71672 16 3 0 79 0 2 81 36 30 95 1 0 95 7 6 46 0 1 40 20 4 21 6 0 25 3 1 36 chain 45655 chr2 243199373 + 18005774 18006399 LTR71B 605 + 0 605 62349 125 16 17 6 6 0 29 2 1 12 0 5 153 25 6 251 chain 20847 chr2 243199373 + 18009994 18010323 THE1C 375 - 44 375 124472 118 27 21 5 0 1 5 0 2 36 2 6 46 13 0 9 1 15 67 chain 3370 chr2 243199373 + 18041074 18041133 MLT1A0 366 + 1 58 217690 22 9 7 28 chain 47743 chr2 243199373 + 18065006 18065533 L1PA5 6144 + 5617 6144 60662 527 chain 405322 chr2 243199373 + 18068415 18074103 L1PB1 5432 - 20 5371 9934 8 1 0 13 1 0 20 2 1 24 2 0 14 8 5 12 1 0 11 9 1 7 3 0 16 1 0 43 1 0 16 11 9 45 27 20 13 1 0 7 86 25 86 0 2 269 0 1 114 0 1 4 1 0 6 3 0 18 10 4 227 33 0 53 0 2 88 216 0 136 0 1 358 1 3 463 1 2 64 1 0 102 0 2 23 0 1 230 3 0 7 11 15 320 5 0 52 0 1 419 3 6 9 2 0 5 6 8 124 16 21 118 0 8 33 0 5 144 0 4 128 28 13 7 1 0 165 0 2 679 1 0 4 14 11 133 1 0 340 chain 14506 chr2 243199373 + 18069735 18069893 L1PA5 6144 + 5982 6140 142874 158 chain 546324 chr2 243199373 + 18084725 18090863 L1PA5 6144 - 0 6141 1907 112 1 0 558 1 0 1932 0 1 573 0 2 2411 1 3 549 chain 25094 chr2 243199373 + 18139000 18139306 AluY 311 + 1 303 104324 25 2 0 99 2 0 178 chain 515525 chr2 243199373 + 18164402 18170345 L1PA4 6152 - 0 6136 5617 6 0 5 660 1 0 527 9 4 397 0 1 549 1 21 43 0 1 251 9 0 522 2 0 308 0 1 143 5 10 797 1 0 498 0 5 814 3 0 5 0 3 133 0 174 4 1 0 254 chain 63401 chr2 243199373 + 18180217 18180988 L1PA8A 6298 + 5496 6270 51280 425 0 2 264 1 2 81 chain 78767 chr2 243199373 + 18183816 18184796 L1PA7 6471 + 5488 6469 44164 5 3 0 5 0 3 120 0 3 120 2 1 365 5 6 343 2 0 10 chain 548000 chr2 243199373 + 18193282 18199290 L1PA2 6032 - 0 6032 1708 1200 9 4 947 1 21 43 0 1 251 9 0 457 0 4 356 0 9 1087 0 4 1648 chain 7931 chr2 243199373 + 18205936 18206099 THE1B 368 - 0 168 171438 20 41 42 18 0 2 44 1 0 12 1 0 12 0 4 14 chain 36919 chr2 243199373 + 18208646 18209139 L1PA8 5853 - 0 483 73635 92 2 1 18 1 0 35 7 9 9 7 0 10 1 0 71 2 0 44 1 0 70 0 1 123 chain 32689 chr2 243199373 + 18213603 18213974 L1PA5 6144 - 4 375 79707 371 chain 176702 chr2 243199373 + 18260927 18263033 L1PA6 6164 + 4060 6156 21281 310 0 4 339 17 1 518 2 1 84 0 6 461 2 1 228 9 7 136 chain 5214 chr2 243199373 + 18274697 18274801 MLT1B 390 + 239 357 192883 13 16 32 22 5 3 48 chain 3137 chr2 243199373 + 18286887 18286957 MER5A 189 - 113 184 222232 28 6 0 9 10 17 17 chain 113266 chr2 243199373 + 18295594 18297095 THE1B-int 1605 + 0 1600 33294 12 4 6 255 0 6 116 1 65 558 3 4 132 6 7 34 0 17 87 3 0 32 0 9 22 16 18 220 chain 12055 chr2 243199373 + 18299740 18299900 THE1-int 844 + 462 623 151968 28 6 7 126 chain 509850 chr2 243199373 + 18320369 18326551 L1PA6 6164 - 5 6164 6180 150 1 2 128 0 3 556 0 5 78 1 0 40 0 1 4 61 1 548 1 0 737 0 2 79 0 1 112 5 7 188 0 12 51 5 8 34 0 1 111 6 7 423 0 1 530 9 10 292 1 0 309 1 0 1263 7 6 46 0 8 405 chain 4721 chr2 243199373 + 18332279 18332365 MLT1C 463 + 0 84 198270 14 22 20 50 chain 6194 chr2 243199373 + 18335502 18335574 MLT1D 503 + 76 148 183625 72 chain 42628 chr2 243199373 + 18335640 18336189 MLT2A2 560 - 0 560 65868 70 0 1 76 1 12 93 1 0 308 chain 3053 chr2 243199373 + 18337549 18337590 MER5A 189 - 27 68 223944 41 chain 24122 chr2 243199373 + 18338907 18339183 AluY 311 + 34 310 109631 276 chain 521337 chr2 243199373 + 18343487 18349931 L1PA7 6471 - 3 6471 5025 146 0 1 34 16 12 376 0 1 52 3 4 139 1 0 75 0 1 6 1 0 318 0 1 238 4 9 579 1 2 273 0 1 593 0 2 113 8 8 331 0 1 395 34 45 66 11 12 113 0 2 190 10 17 400 0 6 99 0 1 44 1 0 375 8 9 8 1 0 959 24 0 58 0 22 95 9 0 32 2 1 203 chain 58830 chr2 243199373 + 18356425 18357311 L1PB1 5432 + 4544 5404 53500 65 5 13 7 2 0 417 0 1 6 1 0 49 1 0 12 1 0 24 1 0 9 30 23 50 2 1 16 1 0 44 1 0 9 31 19 18 8 5 14 2 0 24 1 0 21 1 0 13 chain 12655 chr2 243199373 + 18358561 18358762 L1MA3 4352 - 23 218 149625 15 1 0 26 1 0 5 3 2 23 2 0 23 0 1 4 3 2 49 1 0 45 chain 55965 chr2 243199373 + 18365187 18365887 L1PA7 6471 - 2 698 55143 10 2 0 345 19 20 282 3 0 39 chain 20735 chr2 243199373 + 18373587 18373964 THE1C 375 + 9 375 124833 67 18 19 12 6 7 28 7 11 19 43 26 77 0 1 73 1 0 26 chain 123353 chr2 243199373 + 18383970 18385545 THE1A-int 1579 + 0 1579 29930 129 0 1 729 1 0 4 8 9 249 6 9 449 chain 3769 chr2 243199373 + 18387261 18387346 L1MC1 2226 - 201 281 210823 33 2 0 8 24 21 18 chain 61118 chr2 243199373 + 18406485 18411321 L1PA15 4387 - 21 1861 52289 9 2 0 28 5 0 14 3 1 43 21 18 35 4 3 10 4 0 20 1 0 43 13 14 22 10 9 26 0 1 54 2368 10 67 8 0 6 1 0 43 2 0 42 1082 781 130 41 39 65 1 0 42 0 1 150 307 0 114 chain 3521 chr2 243199373 + 18424719 18424760 MSTA 426 + 385 426 215043 41 chain 41815 chr2 243199373 + 18447852 18448391 MLT2A2 560 - 0 560 66871 54 0 1 5 1 0 87 0 11 91 1 0 153 0 11 147 chain 20344 chr2 243199373 + 18464383 18464619 AluY 311 + 27 261 126084 106 2 0 128 chain 143727 chr2 243199373 + 18466008 18467715 L1PA7 6471 + 4747 6465 25530 232 1 0 348 0 6 281 0 3 629 0 2 30 0 2 27 8 9 143 2 0 6 chain 26329 chr2 243199373 + 18487761 18488120 THE1B 368 + 0 368 98705 44 6 21 107 1 0 23 4 0 99 1 0 74 chain 126544 chr2 243199373 + 18495227 18496674 L1PA5 6144 + 4667 6135 28930 630 0 4 18 0 1 639 0 16 160 chain 28331 chr2 243199373 + 18503024 18503321 AluYg6 310 + 0 297 91834 297 chain 41258 chr2 243199373 + 18524280 18524807 MER41A 554 + 1 533 67582 130 23 24 254 0 4 120 chain 31923 chr2 243199373 + 18525385 18525771 L1PA5 6144 - 2 386 80975 7 4 0 191 1 2 51 0 1 132 chain 10088 chr2 243199373 + 18533177 18533309 L1PA7 6471 - 5 135 160142 7 2 0 123 chain 6571 chr2 243199373 + 18589843 18589956 MER63A 208 + 81 198 180691 74 24 28 15 chain 504400 chr2 243199373 + 18639481 18645589 L1PA7 6471 - 5 6466 6577 155 2 3 68 1 5 511 15 1 19 0 1 82 1 0 115 0 3 79 0 2 72 0 9 240 10 9 110 1 0 1144 3 2 132 3 4 88 1 0 115 1 0 531 22 16 60 0 4 246 0 1 1427 0 4 339 7 16 134 13 353 361 chain 10966 chr2 243199373 + 18678840 18679025 MER20 218 - 2 187 156335 35 1 0 24 7 0 26 1 4 34 9 15 39 1 0 8 chain 49236 chr2 243199373 + 18685869 18686423 L1PA4 6152 - 12 567 59563 322 0 1 232 chain 14148 chr2 243199373 + 18720502 18720710 AluSp 311 + 61 287 144046 71 1 0 6 23 42 107 chain 47899 chr2 243199373 + 18739646 18740317 MER4A 717 + 0 682 60557 25 0 1 95 0 3 5 3 0 29 0 13 56 6 0 46 1 0 142 0 2 91 13 14 11 6 8 6 1 0 135 chain 30426 chr2 243199373 + 18749910 18750300 MER4A1 472 + 33 472 83642 141 0 49 249 chain 174381 chr2 243199373 + 18797283 18799233 L1PA4 6152 - 6 1957 21554 566 5 6 280 1 0 373 0 1 725 chain 16576 chr2 243199373 + 18810913 18811247 L1PB1 5432 - 10 313 136719 18 1 0 13 1 0 21 1 0 24 2 0 20 3 0 17 29 17 11 1 0 44 10 9 9 1 0 49 30 23 13 1 0 15 chain 47561 chr2 243199373 + 18813498 18814190 THE1B-int 1605 + 0 706 60800 13 4 5 92 53 0 191 9 10 84 0 64 20 11 11 148 0 1 67 chain 85613 chr2 243199373 + 18816048 18820538 L1PA11 4918 - 1398 4912 41300 167 4 3 176 7 8 156 3 5 174 15 16 100 7 0 14 1 0 4 0 1 153 7 0 3 23 0 12 0 1 107 2842 2219 23 1 0 50 3 1 14 1 0 34 2 0 6 312 0 31 2 0 36 chain 23595 chr2 243199373 + 18853721 18853988 L1PA4 6152 + 5876 6143 112605 267 chain 540424 chr2 243199373 + 18873474 18879603 L1PA4 6152 - 8 6150 2750 213 0 1 622 0 4 946 0 4 1982 0 1 413 0 4 717 0 1 154 0 1 545 4 0 29 0 2 148 4 3 352 chain 6983 chr2 243199373 + 18897830 18898102 LTR49 580 + 11 275 177590 49 33 34 41 1 0 9 123 115 16 chain 24561 chr2 243199373 + 18905732 18906037 MLT2A2 560 + 0 560 107188 200 0 1 12 8 262 85 chain 32453 chr2 243199373 + 18912985 18913452 L1PB4 2604 + 1910 2374 80106 63 5 8 103 7 1 82 1 0 78 1 6 8 5 0 9 0 1 105 chain 216376 chr2 243199373 + 18914976 18918648 L1PA7 6471 + 3848 6469 18094 244 0 1 394 0 1 177 0 8 276 1 0 337 0 1 20 0 5 235 4 5 63 1 4 250 1073 0 470 0 3 127 chain 15642 chr2 243199373 + 18929813 18930061 L1PA8 5853 - 0 244 139457 93 4 2 17 2 1 23 0 1 14 22 20 73 chain 86229 chr2 243199373 + 19003540 19004514 L1PA5 6144 - 1 978 41067 171 0 3 803 chain 117863 chr2 243199373 + 19046602 19048475 THE1B-int 1605 + 0 1596 31846 338 1 3 55 313 0 36 7 32 48 0 1 6 1 0 51 5 4 436 0 14 11 13 0 339 2 5 63 8 14 140 chain 26117 chr2 243199373 + 19047004 19047306 AluY 311 + 8 311 99537 124 0 1 178 chain 29449 chr2 243199373 + 19056690 19057000 AluYg6 310 + 0 310 86857 310 chain 310573 chr2 243199373 + 19059517 19063331 HERVL-int 5654 + 423 5654 12984 102 8 0 149 4 5 163 1 0 4 0 1 276 0 1 209 6 1370 259 0 38 215 1 0 1267 3 18 166 0 2 228 0 5 324 2 0 139 0 1 69 1 2 218 chain 75699 chr2 243199373 + 19136338 19137213 L1PA7 6471 - 1290 2165 45649 875 chain 103376 chr2 243199373 + 19137225 19138504 L1PA7 6471 + 5183 6470 35904 13 0 1 128 9 8 288 1 0 82 1 0 434 1 0 176 4 10 26 0 7 103 2 0 11 chain 90648 chr2 243199373 + 19144646 19145746 L1PA7 6471 - 5 1116 39408 845 1 0 118 11 23 125 chain 52005 chr2 243199373 + 19145747 19146381 L1P3 4156 + 3506 4139 57625 460 0 1 122 0 1 14 14 11 24 chain 11397 chr2 243199373 + 19178218 19178349 AluYb8 318 + 187 318 154712 131 chain 518210 chr2 243199373 + 19195798 19202204 L1PA7 6471 - 4 6466 5358 121 0 2 38 16 9 776 9 4 979 8 9 981 0 2 60 3 2 609 2 4 231 32 7 144 1 0 95 0 1 8 0 18 105 1 0 235 1 0 637 0 7 99 1 62 301 2 3 163 0 15 328 3 0 9 10 0 28 8 7 124 0 1 238 chain 518210 chr2 243199373 + 19214300 19220706 L1PA7 6471 - 4 6466 5357 121 0 2 38 16 9 776 9 4 979 8 9 981 0 2 60 3 2 609 2 4 231 32 7 144 1 0 95 0 1 8 0 18 105 1 0 235 1 0 637 0 7 99 1 62 301 2 3 163 0 15 328 3 0 9 10 0 28 8 7 124 0 1 238 chain 25607 chr2 243199373 + 19240147 19240438 AluY 311 + 10 301 101687 291 chain 11151 chr2 243199373 + 19253026 19253294 L1PB1 5432 - 14 260 155624 14 1 0 11 2 1 16 7 6 24 2 0 14 1 0 5 3 1 6 1 0 4 0 1 7 9 1 11 3 0 15 7 6 34 11 10 12 1 0 47 chain 82812 chr2 243199373 + 19282324 19283256 L1PA4 6152 - 857 1787 42411 42 3 0 222 1 2 664 chain 75819 chr2 243199373 + 19283256 19284104 L1PA4 6152 + 5298 6151 45481 116 4 0 691 4 13 33 chain 498913 chr2 243199373 + 19289027 19295149 L1PA6 6164 + 0 6162 6903 416 1 2 149 1 0 336 0 4 70 0 1 45 1 0 388 0 4 48 0 4 192 4 7 659 11 0 94 6 7 137 0 1 633 9 8 85 6 5 226 0 1 181 7 22 166 8 1 40 0 52 324 0 2 80 1 0 258 0 1 103 56 1 252 0 24 285 0 5 102 1 0 382 3 1 347 0 2 9 chain 41800 chr2 243199373 + 19295993 19296541 MLT2A2 560 + 12 560 66898 192 18 8 96 1 0 94 0 11 147 chain 8514 chr2 243199373 + 19310573 19310694 MER20 218 - 14 127 168221 43 8 0 70 chain 22534 chr2 243199373 + 19317557 19317889 THE1B 368 - 0 368 117876 165 9 30 4 1 0 51 0 1 4 10 9 21 2 3 21 0 15 44 chain 21303 chr2 243199373 + 19322489 19322855 MSTA 426 - 17 426 122846 92 1 21 60 2 0 10 33 32 35 10 16 10 14 34 99 chain 12375 chr2 243199373 + 19351812 19351963 MER4A 717 - 224 375 150733 151 chain 230139 chr2 243199373 + 19361635 19364150 L1PA3long 6157 - 3268 5783 17299 2515 chain 294521 chr2 243199373 + 19364160 19367419 L1PA3long 6157 + 2888 6157 13731 300 0 1 1164 4 12 1030 0 1 41 0 1 572 1 0 147 chain 45263 chr2 243199373 + 19400241 19400762 L1PA2 6032 + 5510 6032 62753 266 3 1 111 0 1 111 0 1 17 0 1 13 chain 84731 chr2 243199373 + 19410037 19410995 L1PA5 6144 - 1 955 41625 128 1 0 714 0 4 41 7 0 67 chain 118524 chr2 243199373 + 19411004 19412337 L1PA5 6144 + 3839 5176 31609 793 0 1 264 0 4 117 1 0 158 chain 6545 chr2 243199373 + 19412347 19412419 MSTA 426 + 354 426 180880 72 chain 19535 chr2 243199373 + 19441511 19441741 L1PA4 6152 - 9 237 128553 134 1 0 47 1 0 47 chain 12123 chr2 243199373 + 19453348 19453500 L1PA7 6471 - 787 943 151067 14 0 1 49 1 4 88 chain 64667 chr2 243199373 + 19453500 19454587 L1PA7 6471 + 5682 6456 50711 15 1 3 98 319 0 212 0 2 44 0 1 79 0 1 319 chain 30470 chr2 243199373 + 19457215 19457727 L1PB2 3958 + 3341 3838 83486 19 21 15 81 5 3 83 30 28 48 1 0 63 2 1 67 10 8 18 1 0 63 chain 25839 chr2 243199373 + 19458749 19459038 L1PA4 6152 - 1260 1549 100707 289 chain 107951 chr2 243199373 + 19459040 19460267 L1PA4 6152 + 4915 6152 34733 461 1 3 629 0 1 29 0 1 69 0 1 32 0 5 6 chain 238049 chr2 243199373 + 19477337 19480874 L1PA8 5853 - 1 3196 16881 92 2 1 4 0 1 13 5 4 13 0 1 21 35 33 61 2 0 20 0 1 20 4 3 556 0 2 601 7 0 71 6 5 92 22 0 35 0 4 302 0 8 162 0 4 7 330 0 231 0 1 6 1 0 186 7 11 207 8 9 73 1 0 70 7 8 83 16 15 158 chain 30801 chr2 243199373 + 19483815 19484423 L1PREC2 3366 + 2499 3063 82860 218 4 3 32 2 0 47 11 10 30 91 74 9 2 0 29 3 0 12 22 8 38 3 1 41 3 1 11 chain 5838 chr2 243199373 + 19502132 19502216 MLT1A 405 - 4 96 186781 10 0 9 49 1 0 24 chain 552382 chr2 243199373 + 19505600 19511623 L1PA2 6032 + 1 6030 1147 1058 0 1 2079 1 0 2037 0 4 47 0 1 30 0 1 771 chain 7417 chr2 243199373 + 19513750 19513837 L1P2 5180 + 2 89 174668 87 chain 537733 chr2 243199373 + 19583733 19589864 L1PA4 6152 - 0 6142 3196 113 0 1 1200 6 7 134 0 7 1447 0 1 319 0 2 1480 1 0 1431 chain 111153 chr2 243199373 + 19610141 19611378 L1PA4 6152 + 4913 6152 33895 1231 0 2 6 chain 4050 chr2 243199373 + 19643923 19643972 MSTD 398 - 0 49 206639 49 chain 15912 chr2 243199373 + 19653152 19653378 L1PA8 5853 + 5610 5832 138622 68 15 13 49 2 1 19 1 0 72 chain 339967 chr2 243199373 + 19710938 19716108 L1PB1 5432 - 10 4854 11898 18 1 0 12 1 0 22 1 0 24 25 20 17 17 7 6 2 0 14 1 0 45 7 6 10 2 1 11 0 1 40 2 0 9 21 21 21 4 14 33 1 0 154 8 9 101 2 1 182 1 2 12 6 10 405 5 0 34 3 2 117 0 1 83 0 1 227 1 9 81 0 4 350 4 5 351 4 8 84 1 0 55 37 30 258 10 0 365 381 61 137 6 5 91 3 1 60 9 11 107 17 20 222 25 33 295 7 5 174 0 1 42 0 2 93 8 6 185 chain 29127 chr2 243199373 + 19745284 19745660 THE1C 375 - 0 375 88424 26 1 0 164 1 0 102 3 4 79 chain 29782 chr2 243199373 + 19766065 19766425 L1PA7 6471 + 6112 6469 85535 24 1 2 323 4 0 8 chain 438453 chr2 243199373 + 19781192 19786830 L1PA7 6471 + 1128 6470 9096 130 0 3 320 1 6 19 20 8 776 0 3 239 0 1 271 0 1 4 1 0 186 1 5 732 1 0 500 0 1 69 0 12 416 2 0 284 0 1 116 25 23 370 0 4 82 2 0 93 312 1 332 0 1 168 10 11 143 2 0 11 chain 40350 chr2 243199373 + 19795145 19795694 MLT2A2 560 + 0 560 68809 185 15 5 9 0 10 197 0 11 89 0 4 10 4 0 40 chain 16530 chr2 243199373 + 19802062 19802323 L1PA15 4387 + 3937 4195 136837 99 1 0 6 5 6 56 1 0 27 1 0 36 0 1 5 2 1 10 2 1 10 chain 30043 chr2 243199373 + 19804742 19805323 L1PA11 4918 - 292 836 84674 15 47 33 11 2 0 13 1 0 15 13 9 10 8 3 9 4 0 20 1 0 14 2 0 67 2 0 12 6 5 54 6 5 60 24 24 165 chain 87730 chr2 243199373 + 19814866 19816010 MER11A 1151 - 0 1151 40472 60 9 8 16 1 0 147 0 35 23 3 0 177 0 1 124 1 0 21 0 1 4 0 1 121 0 1 22 0 1 38 37 0 45 0 11 66 1 0 228 chain 4465 chr2 243199373 + 19816187 19816280 L1MDa 1598 + 1264 1355 201166 49 27 25 17 chain 40983 chr2 243199373 + 19821223 19822028 L1PB1 5432 + 3740 5376 67931 90 0 1 368 91 915 4 1 0 20 11 9 9 2 0 3 2 0 8 0 34 16 9 8 11 1 0 42 6 5 13 27 15 15 31 26 18 1 0 6 chain 2748 chr2 243199373 + 19822251 19822387 L1MA10 1535 + 1419 1535 229512 26 91 71 19 chain 12429 chr2 243199373 + 19824073 19824500 L1MA8 2339 - 17 413 150533 21 123 95 6 0 7 35 14 11 28 10 0 19 22 31 9 0 2 9 10 11 30 1 0 55 2 0 7 4 0 15 2 0 5 chain 4811 chr2 243199373 + 19844706 19844765 L1MD3 1191 + 1099 1158 197220 59 chain 5295 chr2 243199373 + 19893136 19893236 MER45C 884 - 726 844 192074 69 19 37 12 chain 19109 chr2 243199373 + 19912355 19912710 MSTA 426 - 2 424 129794 142 103 169 86 0 1 24 chain 24757 chr2 243199373 + 19981692 19982049 THE1A 353 + 0 353 106129 48 0 1 45 1 0 17 0 2 6 17 15 103 5 0 93 7 8 15 chain 93405 chr2 243199373 + 19982049 19983294 THE1A-int 1579 + 0 1286 38533 251 0 25 15 7 6 240 6 10 97 18 21 495 9 19 107 chain 8250 chr2 243199373 + 19983763 19983876 THE1A 353 + 0 111 169684 13 2 0 34 0 1 48 1 0 15 chain 22266 chr2 243199373 + 19992331 19992710 THE1D 372 - 0 372 119052 35 6 5 88 4 10 37 9 12 72 6 7 14 34 18 74 chain 29550 chr2 243199373 + 20031985 20032319 L1P1 4361 - 33 365 86101 23 1 0 155 1 0 154 chain 89387 chr2 243199373 + 20032319 20033289 L1PA2 6032 + 5062 6032 39849 970 chain 35666 chr2 243199373 + 20046627 20047033 L1PA5 6144 + 5728 6135 75310 261 0 1 145 chain 23298 chr2 243199373 + 20080048 20080395 THE1B 368 - 12 368 114216 105 40 50 32 2 1 168 chain 3927 chr2 243199373 + 20088386 20088431 MER5A1 166 - 95 140 208463 45 chain 14101 chr2 243199373 + 20114696 20114852 L1PA7 6471 + 6309 6466 144216 58 0 1 98 chain 514949 chr2 243199373 + 20115716 20122486 L1PA7 6471 + 5 6468 5678 235 0 10 158 1 2 127 1 0 41 8 9 152 1 13 221 45 0 11 10 36 75 0 4 59 0 2 741 0 2 97 0 1 519 0 4 109 8 0 49 11 12 391 2 3 67 0 1 4 347 8 392 6 10 235 0 1 451 1 2 695 0 3 572 0 8 84 9 8 71 0 2 578 7 8 19 1 2 159 chain 41030 chr2 243199373 + 20122507 20123020 MER9a2 513 + 0 513 67858 255 3 21 7 18 0 230 chain 248531 chr2 243199373 + 20124639 20127758 HERVK9-int 4720 + 37 4720 16333 12 8 5 4 1 0 24 0 3 39 1 0 7 2 1 30 1 0 112 0 1 35 0 12 151 1 3 74 6 5 90 2 0 4 0 1 846 0 924 231 51 689 299 7 1 308 0 1 98 1 0 286 1 0 347 1 0 4 11 12 24 chain 43707 chr2 243199373 + 20127758 20128272 MER9a2 513 + 0 513 64559 18 2 0 104 0 1 390 chain 2902 chr2 243199373 + 20148434 20148472 L1MD2 1676 + 1422 1459 227008 21 1 0 16 chain 28268 chr2 243199373 + 20156379 20156679 AluYg6 310 - 10 310 92052 300 chain 5263 chr2 243199373 + 20171260 20171347 MSTD 398 + 295 383 192377 44 13 14 30 chain 6266 chr2 243199373 + 20176305 20176386 MLT1B 390 + 259 340 183030 81 chain 27394 chr2 243199373 + 20209053 20209406 L1PA8 5853 + 5507 5853 94990 57 1 0 44 2 0 71 1 0 9 1 0 47 7 6 19 1 0 93 chain 31651 chr2 243199373 + 20209423 20209828 MER4E1 777 + 347 749 81403 194 12 9 199 chain 121789 chr2 243199373 + 20225523 20226863 L1PA3long 6157 + 4813 6157 30448 497 0 4 843 chain 9408 chr2 243199373 + 20228050 20228193 L1PA14 3548 - 3332 3473 163516 67 5 8 51 2 0 7 3 0 8 chain 27975 chr2 243199373 + 20228389 20230641 L1PA15 4387 + 2001 3812 93093 26 34 36 24 6 9 47 3 7 64 2 0 40 1712 1279 21 36 23 120 10 8 107 chain 28991 chr2 243199373 + 20245769 20246119 L1PA6 6164 + 5820 6162 89028 173 7 1 160 2 0 8 chain 20539 chr2 243199373 + 20253749 20254035 LTR32 486 + 7 279 125511 139 23 9 124 chain 23255 chr2 243199373 + 20262967 20263305 THE1B 368 + 1 368 114418 43 0 15 110 1 0 29 34 45 58 0 4 63 chain 40524 chr2 243199373 + 20273592 20274206 LTR76 689 + 0 648 68559 14 0 8 18 4 0 9 0 3 77 8 28 224 4 11 55 2 33 69 2 1 45 1 0 11 0 1 32 30 0 9 chain 254672 chr2 243199373 + 20282779 20286067 HERVH-int 3825 + 3 3566 16003 63 7 8 241 16 17 78 9 8 39 13 73 22 0 209 17 1 0 214 0 1 104 0 7 122 48 21 184 9 0 257 0 27 371 4 9 510 0 14 170 11 0 226 1 0 53 1 0 18 0 3 213 2 0 264 chain 62368 chr2 243199373 + 20305752 20306841 LTR12D 1347 - 0 1347 51732 14 10 0 57 10 8 68 0 200 93 3 0 31 31 39 98 0 41 130 5 36 9 0 41 149 96 27 27 37 77 9 23 0 159 1 5 29 chain 4987 chr2 243199373 + 20312902 20312982 MIRb 242 + 61 140 195277 6 2 0 58 3 4 11 chain 7061 chr2 243199373 + 20375576 20375669 U6 107 + 11 106 177021 36 0 3 18 1 0 38 chain 4486 chr2 243199373 + 20446088 20446138 U7 62 - 2 52 200956 50 chain 29778 chr2 243199373 + 20458411 20458727 AluYb8 318 - 2 318 85548 316 chain 4411 chr2 243199373 + 20558363 20558416 MER66C 541 - 99 152 201790 53 chain 63106 chr2 243199373 + 20567258 20568035 THE1C-int 1605 - 8 785 51397 777 chain 2477 chr2 243199373 + 20568766 20568815 LTR29 598 + 509 561 233340 25 7 11 6 1 0 10 chain 5467 chr2 243199373 + 20589316 20589424 MER58A 224 - 55 174 190338 38 0 3 9 1 0 4 24 33 32 chain 7577 chr2 243199373 + 20601397 20601485 5S 121 - 33 121 173682 88 chain 156988 chr2 243199373 + 20612493 20614943 L1PBa 3878 - 1621 3690 23723 186 0 3 445 1 0 9 1 0 2 0 2 11 14 0 7 0 1 33 73 11 126 0 1 4 10 9 201 314 1 156 4 0 75 7 1 452 1 0 171 0 2 20 0 9 66 22 20 20 1 0 6 0 7 12 chain 547528 chr2 243199373 + 20658068 20664534 L1PA7 6471 + 0 6461 1764 403 0 1 1252 0 2 5 2 0 969 14 0 115 0 1 791 1 2 936 0 1 477 2 1 362 0 7 279 11 10 847 chain 8832 chr2 243199373 + 20680605 20680714 HY1 111 + 1 111 166480 27 0 1 82 chain 79399 chr2 243199373 + 20701025 20701958 LTR5A 1029 - 97 1029 43869 780 6 5 147 chain 90155 chr2 243199373 + 20744534 20745587 MER11C 1089 - 26 1089 39592 319 5 6 46 0 4 371 0 4 63 0 1 249 chain 21988 chr2 243199373 + 20750443 20750711 AluY 311 + 39 308 120274 85 1 2 182 chain 29541 chr2 243199373 + 20798307 20798617 AluYa5 310 - 0 310 86466 310 chain 15981 chr2 243199373 + 20801196 20801496 THE1B 368 + 0 307 138403 134 45 48 10 6 8 14 0 4 6 22 20 63 chain 3706 chr2 243199373 + 20847261 20847319 MER5A 189 + 4 65 211856 24 5 8 29 chain 28576 chr2 243199373 + 20858294 20858608 AluYa5 310 - 0 310 90839 178 4 0 132 chain 29478 chr2 243199373 + 20888603 20888958 L1PA7 6471 - 1 359 86722 31 0 2 121 8 9 195 chain 7060 chr2 243199373 + 20909142 20909252 L1MB7 1623 + 1097 1207 177032 58 2 3 29 0 4 6 5 0 10 chain 23415 chr2 243199373 + 20910882 20911159 AluY 311 + 16 297 113563 116 0 1 57 0 3 104 chain 454037 chr2 243199373 + 20911177 20916480 L1PA6 6164 + 0 6148 8612 178 11 12 307 0 2 192 0 6 90 0 17 341 5 6 301 1 0 513 0 3 245 0 2 118 0 1 65 0 4 786 0 1 515 0 2 642 3 4 154 0 805 836 chain 6251 chr2 243199373 + 20921197 20921293 L1PB1 5432 + 5337 5427 183161 9 2 0 24 1 0 21 1 0 13 1 0 18 1 0 5 chain 3043 chr2 243199373 + 20922320 20922355 L1MA4 2864 + 2774 2809 224137 35 chain 22458 chr2 243199373 + 20938050 20938332 MER41C 542 + 232 535 118211 76 0 19 8 1 3 197 chain 25204 chr2 243199373 + 20950441 20950808 L1PA16 3655 + 3263 3619 103721 314 17 13 6 2 0 7 5 0 16 chain 3947 chr2 243199373 + 20967713 20967754 MER52D 1964 + 1100 1141 208173 41 chain 11371 chr2 243199373 + 20977841 20977978 LTR5_Hs 974 + 0 137 154815 137 chain 13788 chr2 243199373 + 20979027 20979197 L1PA8A 6298 + 6097 6267 145309 75 0 1 16 1 0 78 chain 9788 chr2 243199373 + 20992549 20992671 L1PA8 5853 + 5726 5846 161661 19 1 0 15 1 0 86 chain 27284 chr2 243199373 + 20993747 20994122 THE1B 368 - 0 368 95325 52 9 6 4 0 1 106 13 9 21 1 0 169 chain 23594 chr2 243199373 + 21008870 21009166 AluSc5 308 + 1 288 112610 125 9 0 162 chain 208610 chr2 243199373 + 21019226 21021524 L1PA5 6144 + 3829 6132 18596 129 0 5 2169 chain 28527 chr2 243199373 + 21023395 21023697 AluYb8 318 - 3 305 91067 302 chain 2929 chr2 243199373 + 21026826 21026857 MSTC 436 - 399 430 226512 31 chain 10715 chr2 243199373 + 21029859 21029986 THE1D 372 + 246 372 157349 94 1 0 32 chain 18091 chr2 243199373 + 21071826 21072053 L1P1 4361 + 4 756 131747 86 0 525 141 chain 324493 chr2 243199373 + 21072053 21075745 L1P1 4361 - 664 4360 12418 281 6 7 223 4 0 989 0 2 283 0 5 1906 chain 23536 chr2 243199373 + 21084598 21084949 THE1B 368 + 0 368 112926 44 0 15 33 0 3 64 17 16 73 4 5 88 2 0 6 2 3 18 chain 27089 chr2 243199373 + 21088863 21089149 AluYd8 298 + 0 286 95977 286 chain 29997 chr2 243199373 + 21104081 21104791 MLT2A1 477 + 0 477 84823 168 4 2 8 1 2 18 0 1 159 22 9 18 259 41 11 7 5 35 chain 539598 chr2 243199373 + 21105218 21111372 L1PA4 6152 - 6 6152 2883 119 2 0 1268 18 0 1816 1 13 423 0 2 416 3 4 610 0 13 21 20 1 955 5 8 477 chain 4632 chr2 243199373 + 21129708 21129760 MLT2D 439 - 282 334 199278 52 chain 34823 chr2 243199373 + 21143380 21143829 MER1A 529 - 77 528 76443 264 0 2 89 17 17 79 chain 27431 chr2 243199373 + 21202479 21202804 L1P1 4361 - 20 342 94875 12 2 1 23 1 0 154 1 0 132 chain 33619 chr2 243199373 + 21202804 21203196 L1PA4 6152 + 5744 6139 78211 256 2 4 33 1 2 100 chain 5723 chr2 243199373 + 21278233 21278367 L1MA5A 2387 - 92 199 187901 17 12 15 33 27 0 13 3 0 29 chain 22845 chr2 243199373 + 21292234 21292518 L1PA6 6164 - 4 287 116369 137 0 7 13 8 0 126 chain 47873 chr2 243199373 + 21301908 21302473 L1PA7 6471 - 6 580 60573 121 0 1 333 1 9 110 chain 86811 chr2 243199373 + 21302478 21303476 L1PA7 6471 + 4871 5872 40851 616 0 1 210 0 2 172 chain 25223 chr2 243199373 + 21324344 21324936 LTR12C 1709 - 0 336 103622 84 1 0 78 7 6 47 5 4 71 253 0 46 chain 5363 chr2 243199373 + 21324721 21324784 LTR12C 1709 - 146 208 191405 22 1 0 40 chain 2865 chr2 243199373 + 21324796 21324830 LTR12C 1709 - 219 253 227601 34 chain 12980 chr2 243199373 + 21343968 21344187 L1MA4 2864 + 1956 2166 148309 34 20 16 6 3 0 89 2 0 17 1 0 15 0 1 32 chain 3529 chr2 243199373 + 21367992 21368029 LTR79 453 - 413 450 214891 37 chain 77929 chr2 243199373 + 21375282 21376281 L1PA10 4194 + 3161 4161 44556 233 3 0 81 0 3 305 4 14 221 7 2 95 4 1 34 1 0 11 chain 19511 chr2 243199373 + 21385736 21386039 THE1B 368 - 61 368 128621 65 1 0 10 1 0 18 1 5 9 5 10 21 1 0 27 1 0 67 0 1 4 8 6 64 chain 94681 chr2 243199373 + 21392193 21393549 L1PB1 5432 - 58 1623 38170 4 1 0 25 2 0 13 1 0 5 3 1 13 9 0 13 3 0 18 1 0 46 18 16 52 18 12 10 1 0 8 1 0 24 19 16 100 0 238 130 8 5 33 0 1 112 0 4 306 1 0 127 5 7 226 chain 293766 chr2 243199373 + 21410384 21413838 L1PA3long 6157 - 0 3235 13782 323 226 0 1676 0 3 639 0 1 116 0 3 474 chain 20194 chr2 243199373 + 21410717 21410933 AluYb8 318 - 3 219 126548 216 chain 558632 chr2 243199373 + 21431447 21437599 L1PA3long 6157 - 0 6151 438 5117 1 0 1034 chain 2967 chr2 243199373 + 21460688 21460722 MADE1 96 - 60 94 225723 34 chain 38475 chr2 243199373 + 21463830 21464257 L1PA4 6152 - 16 444 71479 323 0 1 104 chain 41407 chr2 243199373 + 21547242 21547710 L1PA5 6144 - 0 467 67405 153 1 0 314 chain 32564 chr2 243199373 + 21557259 21557713 PrimLTR79 487 - 28 480 79920 91 4 0 86 1 0 14 14 15 191 0 2 53 chain 8955 chr2 243199373 + 21558645 21558752 MER30 238 - 0 107 165853 107 chain 542627 chr2 243199373 + 21558810 21564933 L1PA4 6152 + 1 6151 2403 930 5 0 200 0 13 88 4 5 809 0 1 366 0 1 1101 1 2 460 0 9 209 0 2 230 1 0 3 1 0 172 0 1 697 1 5 691 0 1 154 chain 27153 chr2 243199373 + 21572793 21573083 AluY 311 + 20 311 95745 112 0 1 178 chain 20594 chr2 243199373 + 21577117 21577480 MER83B 357 + 0 340 125321 41 0 1 37 16 18 28 0 1 5 62 31 47 1 5 126 chain 24834 chr2 243199373 + 21586335 21586698 LTR60 593 - 229 593 105703 86 11 12 22 19 20 185 5 4 35 chain 28629 chr2 243199373 + 21600995 21601346 THE1A 353 - 0 353 90614 25 0 4 126 1 0 88 1 0 110 chain 120023 chr2 243199373 + 21601346 21602974 THE1A-int 1579 - 0 1579 31050 210 0 1 307 1 2 403 9 20 131 8 3 51 4 1 337 1 4 13 57 0 96 chain 25371 chr2 243199373 + 21661005 21661386 THE1C 375 + 0 375 102829 180 1 0 4 32 33 29 6 0 129 chain 22576 chr2 243199373 + 21667466 21667736 AluY 311 + 39 309 117689 270 chain 87255 chr2 243199373 + 21697241 21698421 L1PA8 5853 - 0 1182 40670 92 2 1 19 2 1 52 2 1 8 5 4 66 2 0 44 6 5 45 1 0 120 3 1 5 0 2 292 14 10 37 0 11 85 0 1 22 0 1 128 0 1 128 chain 13839 chr2 243199373 + 21699621 21699838 MER30 238 - 0 238 145100 48 3 0 60 4 0 8 2 28 32 0 2 26 0 7 14 7 0 13 chain 106798 chr2 243199373 + 21715793 21716978 L1PA4 6152 - 0 1190 35034 339 0 1 504 0 4 342 chain 70683 chr2 243199373 + 21719654 21720570 L1PA8 5853 - 0 911 48072 93 1 0 19 6 1 52 2 1 8 2 1 66 6 4 44 1 0 90 6 10 376 0 1 86 2 3 56 chain 47113 chr2 243199373 + 21725925 21726467 L1PA7 6471 - 5 547 61117 542 chain 530977 chr2 243199373 + 21743873 21749962 L1PA5 6144 - 6 6141 4083 1061 0 1 245 0 1 525 0 1 801 0 1 247 1 6 453 0 21 1072 1 0 180 0 1 495 1 0 197 0 5 240 4 0 125 0 1 299 11 25 115 0 1 16 chain 3002 chr2 243199373 + 21760402 21760437 MSTA 426 - 136 171 224989 35 chain 19543 chr2 243199373 + 21789714 21789978 L1PA8 5853 + 5586 5853 128536 23 2 0 70 1 0 9 1 0 49 0 8 15 4 3 90 chain 134643 chr2 243199373 + 21805043 21806712 L1PA7 6471 - 31 1706 27087 213 0 7 91 6 0 19 2 0 6 6 8 396 0 2 71 0 5 283 0 1 5 2 1 157 7 0 114 4 9 66 0 1 37 1 0 183 chain 84623 chr2 243199373 + 21806723 21808074 L1P2 5180 + 1689 2770 41677 39 0 1 561 263 10 19 16 0 30 1 0 174 1 3 29 1 0 25 0 1 67 3 0 122 chain 3891 chr2 243199373 + 21810328 21810374 MADE1 96 + 50 96 208999 46 chain 144480 chr2 243199373 + 21819213 21821386 L1PA8 5853 - 0 1860 25401 5 0 1 87 1 0 19 6 5 43 20 18 67 2 0 44 1 0 68 0 1 302 308 0 175 5 12 18 6 0 679 0 1 90 5 3 222 chain 15100 chr2 243199373 + 21824857 21825046 Tigger3a 397 - 12 201 141032 189 chain 266435 chr2 243199373 + 21834746 21838658 L1MA1 4479 - 324 4187 15373 4 1 0 9 1 0 35 2 0 29 1 0 45 5 3 75 2 0 3 1 0 6 1 0 87 6 0 14 2 0 19 1 0 71 1 0 16 2 0 25 1 0 129 13 4 35 2 0 25 13 15 117 3 0 78 13 8 38 4 0 14 1 0 73 4 0 14 16 14 88 0 1 75 19 17 11 1 0 65 34 31 58 2 1 32 2 0 106 1 0 21 0 1 41 1 0 195 6 7 14 7 11 173 0 1 36 2 0 41 33 37 43 0 3 81 0 1 164 0 1 12 1 0 102 4 5 160 0 2 141 2 0 6 0 2 10 15 7 109 1 0 38 0 1 5 1 0 85 7 5 116 2 6 366 2 1 161 0 1 24 2 8 33 6 5 30 1 0 61 chain 5147 chr2 243199373 + 21841357 21841433 MER33 330 + 215 292 193574 30 5 6 41 chain 24918 chr2 243199373 + 21847881 21848239 THE1C 375 - 11 374 105232 15 1 0 62 8 9 139 0 4 52 18 19 63 chain 45848 chr2 243199373 + 21848643 21849159 L1PA4 6152 - 9 525 62181 516 chain 13569 chr2 243199373 + 21849159 21849321 L1P1 4361 + 3822 3985 146094 112 0 1 50 chain 4422 chr2 243199373 + 21857535 21857740 MLT1A0 366 + 8 216 201680 12 5 6 7 1 0 15 116 119 49 chain 12049 chr2 243199373 + 21926909 21927048 MER85 139 + 0 139 151989 139 chain 39420 chr2 243199373 + 22013304 22013793 LTR3B_ 500 + 2 496 70131 299 1 3 117 6 9 66 chain 3079 chr2 243199373 + 22034243 22034278 MSTA 426 + 387 422 223348 35 chain 277946 chr2 243199373 + 22050860 22055115 L1PB1 5432 - 1169 5378 14752 289 1 2 206 51 30 4 1 0 437 5 3 149 1 0 204 4 9 21 0 1 166 0 2 6 2 0 115 572 548 468 0 1 171 20 21 8 14 0 7 1 0 58 1 2 193 1 2 162 0 1 83 0 1 46 0 1 237 2 1 60 6 14 128 3 0 352 chain 36618 chr2 243199373 + 22052619 22053088 L1PB1 5432 + 2091 2555 74069 320 0 1 82 6 0 61 chain 39080 chr2 243199373 + 22062616 22063093 L1PA7 6471 - 3 475 70632 119 1 0 220 4 0 133 chain 23727 chr2 243199373 + 22073236 22073571 L1PA8 5853 - 0 328 111900 84 10 9 16 1 0 51 1 0 14 8 7 64 2 0 46 1 0 37 chain 46356 chr2 243199373 + 22097251 22097839 L1PA7 6471 - 4 595 61725 9 0 2 114 0 1 9 13 0 8 6 20 163 5 4 261 chain 541507 chr2 243199373 + 22126195 22132214 L1PA3long 6157 - 1 6157 2586 4 1 0 641 0 1 202 0 1 9 0 3 3086 0 2 494 0 1 802 5 133 521 5 6 97 0 1 152 chain 12017 chr2 243199373 + 22150712 22151041 THE1C 375 + 0 353 152131 15 2 0 32 86 106 22 2 0 5 0 3 10 50 56 92 1 0 12 chain 30616 chr2 243199373 + 22154451 22154812 L1P2 5180 - 2994 3354 83176 238 1 0 122 chain 20731 chr2 243199373 + 22154812 22155063 L1PA6 6164 + 5905 6162 124851 113 1 7 137 chain 14919 chr2 243199373 + 22160598 22160776 L1PA7 6471 - 17 196 141577 145 0 1 33 chain 13835 chr2 243199373 + 22173607 22173801 HSMAR2 1300 - 30 225 145115 24 3 4 167 chain 20471 chr2 243199373 + 22239707 22239958 AluSg7 307 - 41 292 125703 116 5 4 52 0 1 78 chain 21594 chr2 243199373 + 22250976 22251208 L1PA4 6152 + 5919 6151 121793 232 chain 40226 chr2 243199373 + 22280542 22281166 MER41B 635 - 2 635 68994 34 0 1 4 1 0 27 12 17 41 0 1 15 0 3 25 18 17 261 58 59 128 chain 37051 chr2 243199373 + 22322762 22323245 MLT2A2 560 - 63 560 73455 172 0 7 38 1 0 76 0 1 5 0 3 61 1 0 108 0 5 21 chain 539846 chr2 243199373 + 22379316 22385326 L1PA3long 6157 + 0 6150 2837 153 0 1 618 4 132 52 0 4 4145 0 1 211 0 1 579 0 1 4 1 0 102 0 5 141 chain 19797 chr2 243199373 + 22387241 22387529 L1PA8 5853 - 0 284 127823 93 1 0 19 2 1 32 1 0 20 2 1 5 1 0 33 8 11 30 2 0 39 chain 89840 chr2 243199373 + 22390894 22392210 L1PBa 3878 + 2442 3748 39709 17 32 1 173 31 31 10 0 1 32 0 1 307 7 21 8 13 0 4 0 1 104 0 2 67 6 0 148 0 6 27 0 12 89 0 1 76 0 1 7 0 1 4 1 0 59 0 3 30 1 3 26 2 1 12 2 1 8 2 0 11 chain 41620 chr2 243199373 + 22392894 22393448 MLT2A2 560 + 0 560 67133 88 1 4 36 7 8 54 3 0 5 5 9 347 0 1 8 chain 38738 chr2 243199373 + 22408523 22408992 L1PA7 6471 - 10 494 71093 6 0 6 226 0 1 99 0 5 128 0 3 10 chain 107673 chr2 243199373 + 22409032 22410426 LTR12C 1709 + 0 1709 34811 202 4 4 65 14 15 52 0 43 18 1 0 63 9 11 177 0 278 183 1 0 6 3 1 99 7 11 257 18 1 59 0 8 156 chain 3676 chr2 243199373 + 22462030 22462097 MADE1 96 - 4 87 212285 28 15 31 24 chain 16685 chr2 243199373 + 22473638 22473971 THE1C 375 - 40 375 136448 83 11 5 13 42 50 62 0 1 5 6 7 5 1 0 14 13 14 61 2 0 15 chain 11342 chr2 243199373 + 22478899 22479055 L1PA8 5853 - 0 154 154914 92 2 1 19 3 2 40 chain 401905 chr2 243199373 + 22481918 22487420 L1PB1 5432 - 16 5396 10030 12 1 0 13 1 0 18 1 2 25 32 27 19 12 0 16 8 7 41 1 0 15 2 1 53 2 0 8 5 1 11 1 0 11 1 0 20 11 0 9 109 13 98 0 2 13 3 0 84 1 0 4 1 2 71 0 1 4 13 11 164 7 12 79 1 0 36 2 6 29 1 0 395 8 0 91 0 1 34 1 0 236 3 0 371 0 3 20 0 14 159 1 2 627 0 1 26 3 0 394 0 1 357 0 7 24 3 6 7 0 1 205 0 1 89 4 0 4 11 0 172 0 2 151 0 1 474 3 1 6 0 4 183 1 2 370 chain 18605 chr2 243199373 + 22489861 22490071 L1PA5 6144 - 262 472 131207 210 chain 15984 chr2 243199373 + 22490071 22490261 L1PA5 6144 + 5945 6134 138394 93 2 1 95 chain 335439 chr2 243199373 + 22527227 22530981 L1PA3long 6157 + 0 6157 12010 427 0 5 265 0 2398 2504 1 7 9 6 0 542 chain 8684 chr2 243199373 + 22532345 22532495 Tigger4b 360 + 207 347 167283 9 9 0 86 13 12 33 chain 5831 chr2 243199373 + 22532836 22532939 L1PB1 5432 + 5320 5424 186855 7 2 0 4 1 0 15 2 0 24 1 0 21 1 0 7 0 9 11 1 0 6 chain 18870 chr2 243199373 + 22533594 22533968 L1MA5A 2387 + 1960 2295 130460 50 10 9 15 7 0 7 16 18 48 1 0 33 0 1 14 3 1 30 8 9 20 3 0 15 29 0 65 chain 29900 chr2 243199373 + 22560393 22560709 AluYb8 318 + 0 316 85098 316 chain 4940 chr2 243199373 + 22618096 22618191 L1MA4 2864 + 2730 2812 195794 7 11 0 24 7 5 46 chain 27876 chr2 243199373 + 22639103 22639469 L1PA8A 6298 + 5924 6291 93434 264 16 17 86 chain 26850 chr2 243199373 + 22647838 22648328 L1PA15 4387 - 30 497 96809 28 5 0 16 0 1 5 6 3 34 6 3 46 18 13 23 1 0 21 45 44 110 5 0 77 1 0 43 chain 80391 chr2 243199373 + 22663357 22664367 L1PA8 5853 - 3 1011 43431 90 1 0 19 2 1 51 12 10 71 2 0 46 1 0 476 0 2 71 8 10 103 0 1 57 chain 17766 chr2 243199373 + 22669090 22669288 L1PA3long 6157 + 5959 6157 133528 198 chain 119636 chr2 243199373 + 22698353 22700221 THE1B-int 1605 + 28 1600 31166 397 1 26 53 341 13 157 0 3 174 0 4 315 0 1 5 6 5 419 chain 5178 chr2 243199373 + 22734331 22734459 MLT1C 463 - 294 409 193250 6 3 0 25 44 34 50 chain 176153 chr2 243199373 + 22745261 22747264 L1PA4 6152 + 4143 6143 21339 521 0 1 628 2 1 523 1 2 174 15 11 139 chain 9332 chr2 243199373 + 22767722 22767847 MER85 139 + 2 137 163893 94 3 13 28 chain 91335 chr2 243199373 + 22770154 22771213 L1PA5 6144 + 5069 6129 39181 225 1 0 568 0 1 138 0 1 127 chain 275677 chr2 243199373 + 22813131 22816830 L1PA10 4194 + 399 4138 14888 4 1 0 81 2 0 38 19 23 557 4 0 13 5 6 75 0 1 90 0 5 173 6 7 175 0 4 11 5 8 41 0 2 189 10 1 29 0 1 68 0 1 103 10 11 77 0 1 189 0 3 528 3 7 40 1 2 202 9 22 67 8 15 38 0 5 183 7 1 22 21 22 90 0 8 120 4 3 321 1 0 34 3 0 22 chain 12424 chr2 243199373 + 22866462 22866604 L1PA8 5853 - 398 540 150550 142 chain 29174 chr2 243199373 + 22866623 22867020 L1PA8 5853 + 5456 5849 88183 108 1 0 25 0 2 17 2 0 67 5 4 9 1 0 52 2 1 19 1 0 29 1 2 58 chain 13398 chr2 243199373 + 22905059 22905217 L1PA3long 6157 - 8 167 146731 134 0 1 24 chain 17687 chr2 243199373 + 22928131 22928325 L1PA3long 6157 - 2 196 133733 194 chain 26633 chr2 243199373 + 22928722 22929029 L1P1 4361 + 2760 3065 97541 6 2 0 299 chain 122769 chr2 243199373 + 22943451 22945061 THE1A-int 1579 - 10 1579 30125 487 8 7 633 53 7 52 0 1 47 0 1 224 12 15 68 6 7 20 chain 22906 chr2 243199373 + 22945061 22945413 THE1A 353 - 0 353 116085 158 8 9 15 15 16 35 15 14 106 chain 44102 chr2 243199373 + 22953835 22954366 L1P1 4361 - 1312 1843 64084 531 chain 223011 chr2 243199373 + 22954366 22957147 L1PA7 6471 + 3714 6469 17710 69 12 18 864 9 11 264 10 9 672 1 0 79 0 2 409 27 0 169 55 50 128 2 0 11 chain 15725 chr2 243199373 + 22962509 22962926 THE1C 375 - 0 374 139197 32 8 7 94 74 64 37 21 1 26 50 31 29 9 18 23 2 0 12 chain 49674 chr2 243199373 + 22985887 22986467 L1PA7 6471 - 1 580 59251 12 2 1 566 chain 24758 chr2 243199373 + 23027977 23028349 THE1B 368 - 0 360 106122 40 21 22 105 3 0 27 3 2 69 9 0 95 chain 13223 chr2 243199373 + 23029924 23030129 THE1B 368 - 12 224 147381 18 22 32 112 2 0 20 3 2 28 chain 4132 chr2 243199373 + 23030129 23030183 THE1B 368 - 232 286 205471 54 chain 6498 chr2 243199373 + 23030187 23030264 THE1B 368 - 291 368 181267 77 chain 8669 chr2 243199373 + 23040099 23040297 MLT1D 503 - 0 223 167365 85 65 91 30 5 4 13 chain 33952 chr2 243199373 + 23054362 23054810 L1PA8 5853 + 5410 5853 77692 154 1 0 44 2 0 31 0 1 33 17 15 11 0 1 40 2 1 19 1 0 93 chain 2342 chr2 243199373 + 23074106 23074150 MER5A1 166 - 85 118 234887 8 11 0 25 chain 8545 chr2 243199373 + 23105191 23105296 L1PA5 6144 + 6038 6143 168042 105 chain 6696 chr2 243199373 + 23153674 23153842 MER74C 455 + 0 166 179721 8 1 0 20 0 1 54 67 65 18 chain 8897 chr2 243199373 + 23156016 23156141 MER85 139 - 0 139 166154 29 3 14 35 0 3 58 chain 3225 chr2 243199373 + 23168497 23168534 Tigger3b 1229 - 665 702 220515 37 chain 27137 chr2 243199373 + 23168534 23168835 AluYf4 310 + 0 300 95804 153 0 1 112 2 0 34 chain 124169 chr2 243199373 + 23194402 23196728 L1MA2 4263 + 2248 4111 29643 126 4 1 62 6 9 37 0 1 72 0 4 84 3 1 103 2 0 26 0 8 60 6 3 60 1 5 158 10 8 336 23 26 17 22 17 89 6 5 17 6 3 76 6 5 45 5 0 8 0 1 75 13 10 51 1 0 13 455 0 79 15 20 89 6 0 16 0 1 30 1 0 6 chain 30631 chr2 243199373 + 23196036 23196486 MLT2A1 477 + 0 477 83154 33 0 5 131 4 1 124 1 2 89 15 56 12 17 0 24 chain 550202 chr2 243199373 + 23207025 23213040 L1PA2 6032 + 2 6032 1420 695 7 0 4057 1 0 321 0 25 919 2 0 13 chain 41779 chr2 243199373 + 23268742 23269261 L1PA8 5853 + 5340 5853 66928 224 1 0 44 2 0 71 1 0 12 1 0 49 2 1 9 0 1 12 1 0 90 chain 3484 chr2 243199373 + 23269795 23269834 L1PA8 5853 + 5814 5853 215609 39 chain 42438 chr2 243199373 + 23312899 23313435 MLT2A2 560 + 4 560 66093 199 0 1 184 6 25 147 chain 53477 chr2 243199373 + 23333290 23333926 L1PA10 4194 - 33 674 56702 11 1 0 32 6 3 122 0 9 32 1 0 151 0 1 280 chain 523052 chr2 243199373 + 23394422 23400552 L1PA5 6144 + 0 6132 4859 121 0 14 134 8 1 900 8 0 263 1 0 383 0 7 11 0 4 473 0 3 837 1 5 556 2 0 53 1 0 5 0 1 846 0 1 349 1 0 148 0 1 230 14 0 722 5 6 58 chain 559945 chr2 243199373 + 23447722 23453757 L1PA2 6032 - 0 6031 360 5665 4 0 366 chain 10322 chr2 243199373 + 23463699 23464050 MLT1B 390 - 16 364 159021 59 197 198 70 4 0 21 chain 23421 chr2 243199373 + 23502738 23503017 AluY 311 + 15 295 113533 117 0 1 162 chain 27356 chr2 243199373 + 23530499 23530874 THE1C 375 - 0 375 95094 10 1 2 102 0 2 61 10 4 12 0 3 179 chain 27551 chr2 243199373 + 23591531 23591831 AluYd8 298 + 0 298 94504 111 2 0 187 chain 4345 chr2 243199373 + 23637755 23637817 MLT1N2 510 - 15 76 202666 41 1 0 20 chain 225856 chr2 243199373 + 23660528 23663019 L1PA3long 6157 - 1347 3839 17536 1120 0 1 1371 chain 120379 chr2 243199373 + 23663019 23664345 L1PA3long 6157 + 4816 6142 30881 1326 chain 12741 chr2 243199373 + 23713836 23713996 L1PA8 5853 - 0 158 149284 93 1 0 19 2 1 45 chain 25583 chr2 243199373 + 23931898 23932211 AluSp 311 - 0 311 101809 81 1 0 121 1 0 109 chain 21265 chr2 243199373 + 23951707 23952075 MSTA 426 - 0 426 122978 81 17 49 56 37 35 42 0 4 11 25 49 99 chain 546306 chr2 243199373 + 23959438 23965581 L1PA4 6152 + 12 6148 1908 437 0 1 6 12 6 118 1 0 151 1 2 301 1 0 196 2 1 3074 1 0 53 0 1 1789 chain 36838 chr2 243199373 + 23989896 23990357 LTR10F 562 + 7 527 73753 175 0 59 138 3 2 97 4 5 44 chain 20902 chr2 243199373 + 24034385 24034621 L1PA7 6471 + 6228 6464 124266 236 chain 5317 chr2 243199373 + 24059547 24059607 MER52A 1651 - 811 871 191856 60 chain 1484 chr2 243199373 + 24059616 24059662 MER52A 1651 - 715 752 228664 17 9 0 20 chain 9449 chr2 243199373 + 24073407 24073603 L1MC2 1988 + 1566 1753 163314 100 68 59 28 chain 11232 chr2 243199373 + 24129346 24129475 L1P1 4361 - 1693 1822 153610 129 chain 225334 chr2 243199373 + 24129475 24132011 L1PA3long 6157 + 3632 6157 17570 1019 20 0 431 1 0 228 0 4 590 2 1 107 0 7 138 chain 22009 chr2 243199373 + 24133814 24134105 AluSp 311 + 0 295 120186 128 12 17 136 2 1 13 chain 26303 chr2 243199373 + 24137427 24137729 AluYf4 310 + 0 299 98819 126 3 0 173 chain 25907 chr2 243199373 + 24146770 24147060 AluYf4 310 + 0 289 100397 132 1 0 157 chain 8942 chr2 243199373 + 24183834 24183948 L1MB8 1703 - 149 261 165909 98 2 0 14 chain 22312 chr2 243199373 + 24185778 24186077 THE1B 368 - 59 368 118867 16 1 0 74 1 0 27 3 1 23 1 0 113 0 15 40 chain 25173 chr2 243199373 + 24191752 24192046 AluSc 308 - 0 294 103891 294 chain 3343 chr2 243199373 + 24195749 24195787 Charlie1 1172 + 109 147 218188 38 chain 7927 chr2 243199373 + 24204795 24204948 MER30 238 - 8 162 171462 65 6 4 6 6 0 17 2 0 7 4 0 6 7 22 27 chain 24718 chr2 243199373 + 24204956 24205250 AluY 311 + 9 296 106336 117 7 0 170 chain 24408 chr2 243199373 + 24218308 24218590 AluY 311 + 29 310 108035 104 1 0 177 chain 21637 chr2 243199373 + 24223875 24224136 AluSp 311 - 26 288 121626 100 0 1 161 chain 9875 chr2 243199373 + 24236543 24236685 MER30 238 + 0 178 161197 21 1 21 56 1 17 63 chain 22250 chr2 243199373 + 24250989 24251275 AluSg4 309 + 10 293 119117 46 0 3 146 0 3 5 3 0 74 6 0 6 chain 24667 chr2 243199373 + 24273931 24274224 AluSg 306 + 8 301 106626 293 chain 26694 chr2 243199373 + 24300798 24301180 MER34D 576 + 14 404 97342 159 1 4 4 0 1 22 6 8 66 5 0 55 5 12 59 chain 23151 chr2 243199373 + 24312862 24313162 AluY 311 + 1 294 114885 101 4 8 22 0 1 9 0 1 144 13 0 7 chain 43631 chr2 243199373 + 24316017 24316896 L1PA8 5853 - 0 573 64649 89 5 4 16 1 0 48 4 3 11 1 0 74 5 3 41 1 0 173 299 0 111 chain 521023 chr2 243199373 + 24318027 24324128 L1PA6 6164 + 18 6150 5050 219 0 2 279 0 2 47 1 0 220 17 0 20 0 17 412 0 1 190 5 4 385 0 4 39 0 5 417 0 1 43 11 0 72 0 4 782 1 2 88 0 2 758 0 1 69 1 11 248 0 4 218 0 1 96 6 5 305 0 1 323 0 6 829 chain 17312 chr2 243199373 + 24331218 24331467 L1PREC2 3366 + 1625 1858 134753 141 10 0 10 6 1 77 1 0 4 chain 210364 chr2 243199373 + 24352686 24355489 L1PA8 5853 - 0 2768 18481 79 0 6 7 2 1 19 2 1 28 35 35 69 2 0 14 1 0 30 1 0 80 0 3 180 2 1 95 36 38 152 1 9 22 5 7 200 0 6 175 35 0 559 1 0 684 0 3 128 23 1 136 chain 55836 chr2 243199373 + 24373597 24375346 L1M1 2793 - 1132 1987 55227 295 20 26 41 16 17 12 8 0 21 4 0 70 1 0 59 895 0 117 1 0 99 14 11 26 1 5 9 15 22 25 chain 464801 chr2 243199373 + 24416294 24421504 L1PA4 6152 - 1 5223 8228 147 1 0 903 3 10 467 0 1 133 2 9 542 0 1 761 1 0 1224 1 0 937 2 1 86 chain 30247 chr2 243199373 + 24421514 24422350 LTR10F 562 - 0 562 84065 51 1 0 38 368 0 196 5 11 12 0 24 19 28 0 19 1 85 26 0 5 38 1 5 33 chain 21608 chr2 243199373 + 24444834 24445099 AluY 311 + 1 261 121740 23 6 0 102 0 1 134 chain 22476 chr2 243199373 + 24478649 24478943 AluSp 311 + 13 297 118130 119 4 0 141 14 8 16 chain 27007 chr2 243199373 + 24489955 24490264 L1PA7 6471 + 6160 6470 96258 173 0 1 136 chain 14138 chr2 243199373 + 24512582 24512765 MER30 238 + 25 236 144077 83 4 32 96 chain 30082 chr2 243199373 + 24543106 24543424 AluYb8 318 + 0 318 84554 318 chain 2937 chr2 243199373 + 24567486 24567535 MER33 330 - 40 87 226391 4 1 0 31 2 0 5 0 1 6 chain 3674 chr2 243199373 + 24572512 24572555 MER41B 635 - 114 157 212322 43 chain 109080 chr2 243199373 + 24578213 24580452 L1PA8A 6298 + 4941 6290 34427 278 0 1 147 605 0 122 0 3 78 0 2 48 294 0 57 1 0 30 0 1 442 0 2 32 6 7 99 chain 25930 chr2 243199373 + 24602004 24602313 AluSp 311 - 2 311 100298 309 chain 3189 chr2 243199373 + 24623519 24623562 SVA_F 1814 - 1156 1431 221130 13 0 232 30 chain 8679 chr2 243199373 + 24644003 24644470 MER44A 345 + 195 345 167306 34 327 12 6 1 0 17 0 2 69 3 0 10 chain 6268 chr2 243199373 + 24670485 24670578 L1MD2 1676 - 831 923 183016 12 7 6 74 chain 26390 chr2 243199373 + 24674667 24675023 THE1B 368 + 0 368 98450 23 2 1 16 0 15 117 2 1 53 1 0 142 chain 24484 chr2 243199373 + 24693595 24693871 AluY 311 + 10 284 107633 71 1 0 52 1 0 151 chain 115150 chr2 243199373 + 24706140 24707536 THE1A-int 1579 + 177 1579 32735 149 5 6 392 5 6 215 2 1 496 0 5 132 chain 24080 chr2 243199373 + 24720264 24720553 AluSx4 309 + 0 293 109873 84 0 4 205 chain 25367 chr2 243199373 + 24722965 24723276 AluSp 311 - 13 311 102845 7 13 0 291 chain 4854 chr2 243199373 + 24744607 24744749 L1MA9 1812 - 174 308 196735 13 29 27 19 12 9 29 4 2 15 1 0 20 chain 461717 chr2 243199373 + 24754328 24759702 L1PA6 6164 - 4 5389 8343 10 0 3 26 9 2 732 0 1 64 0 4 570 0 1 381 0 4 60 0 2 393 0 3 45 1 2 160 0 1 173 1 0 205 1 0 127 6 2 219 0 1 714 0 1 571 1 0 50 0 1 569 2 4 284 chain 22997 chr2 243199373 + 24773164 24773517 THE1B 368 - 2 368 115635 123 0 3 9 3 0 59 6 5 53 1 0 29 26 41 44 chain 28854 chr2 243199373 + 24781173 24781528 THE1A 353 - 0 353 89652 189 1 0 54 1 0 110 chain 30000 chr2 243199373 + 24820649 24821012 L1PA5 6144 - 0 363 84811 143 7 0 13 0 7 200 chain 19229 chr2 243199373 + 24859953 24860159 L1PA3long 6157 - 0 206 129437 206 chain 29156 chr2 243199373 + 24860159 24860474 L1PA3long 6157 + 5596 5911 88282 315 chain 47201 chr2 243199373 + 24860900 24861707 L1MA5A 2387 - 86 820 61043 5 1 0 64 32 0 17 3 0 8 4 5 15 20 0 32 3 1 35 7 11 39 1 0 33 5 4 106 5 4 76 7 0 129 3 0 23 1 0 53 10 20 12 16 0 42 chain 4895 chr2 243199373 + 24894777 24894833 MER2 342 - 166 222 196312 56 chain 2929 chr2 243199373 + 24900247 24900278 THE1D 372 - 37 68 226533 31 chain 35821 chr2 243199373 + 24901271 24901884 L1PA11 4918 - 289 870 75106 18 63 47 10 1 0 15 31 22 9 4 0 20 6 5 9 2 0 64 2 3 13 2 1 61 5 0 38 0 2 58 0 4 182 chain 24912 chr2 243199373 + 24910335 24910716 THE1D 372 - 0 372 105269 35 2 1 9 1 0 80 3 9 44 7 9 52 1 5 53 19 0 75 chain 28686 chr2 243199373 + 24911729 24912275 L1PREC2 3366 - 291 819 90383 12 1 0 4 1 0 11 2 0 38 10 8 30 23 9 11 4 1 29 3 1 13 52 62 39 4 3 52 2 0 34 1 4 5 3 0 162 chain 9984 chr2 243199373 + 24963187 24963412 Tigger3a 397 - 63 345 160657 54 12 14 4 1 0 70 61 117 23 chain 23474 chr2 243199373 + 24988091 24988381 AluY 311 + 1 296 113248 106 5 12 14 2 0 163 chain 34050 chr2 243199373 + 24993919 24994383 LTR19A 502 - 0 502 77546 11 1 5 58 4 0 127 1 0 20 6 8 56 1 38 179 chain 16425 chr2 243199373 + 25000620 25000834 LTR9 672 - 462 672 137134 118 5 1 91 chain 4285 chr2 243199373 + 25008777 25008829 MER5A 189 - 89 141 203412 52 chain 545858 chr2 243199373 + 25023205 25029340 L1PA4 6152 - 9 6152 1968 1254 0 1 2567 2 1 116 0 4 481 0 1 474 0 1 619 0 1 243 0 1 379 chain 5705 chr2 243199373 + 25060764 25060840 MER30 238 + 165 238 188060 25 3 0 48 chain 27202 chr2 243199373 + 25067685 25068038 THE1A 353 + 0 353 95590 36 0 1 65 19 18 233 chain 119159 chr2 243199373 + 25068038 25069922 THE1A-int 1579 + 0 1579 31353 265 0 3 68 0 2 100 0 2 66 1 5 240 0 1 110 1 0 227 1 0 186 13 4 92 339 29 38 1 6 68 1 0 67 chain 21997 chr2 243199373 + 25069447 25069726 AluSq10 312 - 12 291 120247 51 8 0 7 0 8 213 chain 25574 chr2 243199373 + 25069922 25070258 THE1A 353 + 0 339 101850 110 11 10 72 0 4 143 chain 45803 chr2 243199373 + 25070928 25071441 MER9a1 513 + 0 513 62232 513 chain 29138 chr2 243199373 + 25085977 25086415 MLT2A1 477 + 0 477 88376 161 11 9 12 0 1 20 0 1 20 3 0 96 5 7 58 19 55 27 0 4 6 chain 21532 chr2 243199373 + 25128912 25129191 AluSx 319 + 19 301 122040 256 4 7 19 chain 24022 chr2 243199373 + 25139280 25139563 AluSc 308 + 10 293 110202 283 chain 5026 chr2 243199373 + 25155755 25156153 MLT1C 463 - 10 397 194870 12 0 1 36 315 302 20 0 1 15 chain 201666 chr2 243199373 + 25210922 25213560 HERVL-int 5654 + 2696 5325 19091 130 17 1 67 6 0 116 2 0 6 0 2 59 0 1 533 0 7 196 1 25 110 1 0 48 9 19 303 0 1 14 5 10 68 54 14 67 6 10 395 6 7 319 10 11 90 chain 8414 chr2 243199373 + 25215215 25215314 MER61-int 3695 + 2288 2387 168768 99 chain 29218 chr2 243199373 + 25227629 25227940 AluYb8 318 + 0 310 87970 132 1 0 178 chain 7364 chr2 243199373 + 25231715 25231802 HY3 101 - 1 88 175009 87 chain 28032 chr2 243199373 + 25269375 25269671 AluYf4 310 - 14 310 92885 296 chain 20162 chr2 243199373 + 25271457 25271763 LTR13 1007 + 0 955 126636 30 1 14 29 21 19 114 0 636 83 0 2 28 chain 11520 chr2 243199373 + 25292930 25293085 MER66B 489 - 328 489 154222 77 5 11 73 chain 35749 chr2 243199373 + 25307047 25307852 MER4A1 472 - 0 472 75201 25 336 0 32 0 1 11 1 3 224 0 1 4 1 0 171 chain 28566 chr2 243199373 + 25309806 25310179 THE1C 375 - 0 375 90890 23 6 5 126 0 3 218 chain 22983 chr2 243199373 + 25336272 25336565 AluY 311 + 0 311 115698 38 11 28 66 0 1 178 chain 24646 chr2 243199373 + 25347313 25347632 AluY 311 + 0 307 106742 77 7 1 31 6 0 24 1 0 74 0 1 99 chain 31475 chr2 243199373 + 25398270 25398647 MER41A 554 + 0 379 81684 93 0 1 122 3 0 17 0 3 82 0 1 60 chain 19313 chr2 243199373 + 25429479 25429742 AluSg 306 + 8 286 129204 43 10 27 47 2 0 161 chain 24174 chr2 243199373 + 25431271 25431556 AluY 311 + 4 286 109348 119 7 4 159 chain 13347 chr2 243199373 + 25431999 25432156 AluJb 308 + 71 227 146894 48 1 0 108 chain 23480 chr2 243199373 + 25434809 25435100 AluSc 308 - 17 308 113217 137 6 9 5 3 0 140 chain 25338 chr2 243199373 + 25439525 25439815 AluSp 311 - 21 311 103032 290 chain 10326 chr2 243199373 + 25443899 25444028 MER85 139 + 0 139 159006 90 0 10 39 chain 24497 chr2 243199373 + 25540615 25540902 AluSp 311 - 23 311 107559 283 0 1 4 chain 58986 chr2 243199373 + 25593214 25593991 MER4E1 777 + 0 777 53405 141 4 0 85 2 0 16 1 0 87 0 19 69 4 7 12 0 1 99 18 3 11 2 1 226 chain 247444 chr2 243199373 + 25614527 25618236 L1PB1 5432 + 2051 5422 16377 217 0 3 104 0 4 69 0 3 42 9 0 27 327 0 143 11 14 149 1 0 16 1 0 165 0 1 4 1 0 29 0 10 170 0 4 484 40 29 527 0 2 178 1 3 154 0 4 22 1 2 91 0 1 74 5 8 290 20 20 24 2 1 5 1 0 14 5 1 9 2 0 52 6 5 12 1 0 44 1 0 15 1 0 6 18 9 15 1 0 5 3 1 16 2 0 22 1 0 21 1 0 13 1 0 18 chain 7327 chr2 243199373 + 25618850 25618984 L1PB1 5432 + 5028 5158 175249 75 13 11 24 1 0 4 6 5 11 chain 5285 chr2 243199373 + 25618989 25619061 L1PB1 5432 + 5159 5229 192155 9 2 0 61 chain 3882 chr2 243199373 + 25619069 25619114 L1PB1 5432 + 5236 5281 209136 45 chain 5958 chr2 243199373 + 25620262 25620332 L1MB8 1703 + 1495 1565 185610 70 chain 18526 chr2 243199373 + 25629203 25629421 AluSp 311 + 85 299 131433 43 4 0 171 chain 35230 chr2 243199373 + 25629989 25630526 L1PB3 3668 + 3041 3556 75882 247 5 4 91 5 3 4 0 1 83 27 8 19 10 11 16 3 1 27 chain 9271 chr2 243199373 + 25633569 25633686 LTR23 429 + 114 231 164211 117 chain 85274 chr2 243199373 + 25636139 25637117 L1PA5 6144 - 1 970 41431 10 1 3 386 15 1 446 0 3 120 chain 6498 chr2 243199373 + 25661069 25661163 MER30 238 - 0 102 181260 45 3 4 21 0 7 25 chain 26084 chr2 243199373 + 25671444 25671744 AluY 311 + 3 302 99688 129 0 1 111 2 0 58 chain 17127 chr2 243199373 + 25681012 25681260 MER75 514 + 260 514 135243 14 13 16 193 5 8 23 chain 27598 chr2 243199373 + 25685577 25685871 AluYa5 310 - 16 310 94352 294 chain 4570 chr2 243199373 + 25690662 25690799 MER58A 224 - 24 174 200004 41 69 82 27 chain 5139 chr2 243199373 + 25742383 25742610 Tigger4a 237 - 0 237 193683 39 0 1 21 142 0 10 0 151 15 chain 152562 chr2 243199373 + 25756871 25759575 SVA_A 1864 - 3 1849 24278 83 0 3 63 13 6 177 0 1 232 1 0 91 3 0 33 43 1 26 1 0 47 2 0 76 104 0 35 2 0 100 696 0 112 3 0 8 0 2 103 3 0 647 chain 2127 chr2 243199373 + 25757579 25757608 SVA_A 1864 - 811 840 134365 29 chain 4034 chr2 243199373 + 25757762 25757817 SVA_A 1864 - 1250 1305 134365 55 chain 3141 chr2 243199373 + 25758003 25758040 SVA_A 1864 - 940 977 153771 37 chain 29339 chr2 243199373 + 25758044 25758595 SVA_A 1864 - 977 1444 74405 28 39 0 20 11 8 31 2 1 29 3 5 29 3 0 91 40 0 225 chain 2381 chr2 243199373 + 25758595 25758634 SVA_A 1864 - 1328 1367 97587 39 chain 3046 chr2 243199373 + 25758636 25758699 SVA_A 1864 - 1178 1241 151678 63 chain 44616 chr2 243199373 + 25763431 25763920 SVA_D 2077 + 1583 2076 63463 395 0 4 94 chain 26504 chr2 243199373 + 25775710 25775989 AluYb8 318 - 0 279 98027 279 chain 25431 chr2 243199373 + 25776332 25776631 AluSq 315 + 8 306 102539 268 1 0 30 chain 5712 chr2 243199373 + 25787625 25787694 L1MB7 1623 - 1469 1538 187996 69 chain 5305 chr2 243199373 + 25787735 25787813 MADE1 96 - 1 96 191968 44 5 22 29 chain 7325 chr2 243199373 + 25795597 25795701 MLT1J2-int 891 - 507 608 175272 25 1 0 65 2 0 11 chain 24028 chr2 243199373 + 25800599 25800874 AluSp 311 + 10 287 110171 54 0 2 221 chain 4239 chr2 243199373 + 25807762 25807837 Charlie1a 1436 + 1360 1436 204038 45 13 14 17 chain 2507 chr2 243199373 + 25813398 25813448 MER52A 1651 - 713 755 233044 21 11 3 18 chain 9229 chr2 243199373 + 25836291 25836408 L1PA16 3655 - 79 195 164401 71 1 0 45 chain 163438 chr2 243199373 + 25856056 25857939 SVA_D 2077 + 58 2076 22887 563 8 0 275 28 80 20 0 63 198 0 1 4 10 37 8 0 1 80 0 1 4 10 8 675 chain 1756 chr2 243199373 + 25856902 25856930 SVA_D 2077 + 856 884 144842 28 chain 118250 chr2 243199373 + 25859897 25861236 L1PA5 6144 + 4803 6143 31708 1184 9 10 146 chain 43531 chr2 243199373 + 25866621 25867170 MER41A 554 + 0 554 64770 469 11 16 69 chain 21565 chr2 243199373 + 25876006 25876290 THE1A 353 + 0 293 121903 76 1 11 24 1 0 182 chain 6246 chr2 243199373 + 25883088 25883263 L1MB7 1623 + 1456 1603 183192 22 1 0 13 13 8 19 3 0 14 32 20 4 1 0 6 5 0 34 1 0 7 chain 43120 chr2 243199373 + 25885777 25886378 L1PA8 5853 - 0 595 65270 87 8 7 18 2 1 52 2 1 8 2 1 70 9 7 37 1 0 26 0 1 22 1 0 118 3 4 135 chain 21237 chr2 243199373 + 25927624 25927917 Tigger1 2417 + 584 879 123069 47 0 1 164 3 0 6 6 9 40 0 1 27 chain 126983 chr2 243199373 + 25927922 25929331 SVA_C 1631 + 0 1626 28818 17 2 0 7 4 0 29 0 8 589 0 40 165 0 175 596 chain 6265 chr2 243199373 + 25930720 25930834 Tigger1 2417 + 2302 2416 183052 43 17 0 11 2 19 41 chain 12929 chr2 243199373 + 25934839 25934998 LTR2C 499 - 0 157 148506 95 2 0 62 chain 132991 chr2 243199373 + 25945507 25946999 SVA_D 2077 - 4 1993 27423 14 2 0 418 0 11 88 0 225 247 1 224 82 0 40 640 chain 40289 chr2 243199373 + 25949834 25950299 L1PA6 6164 - 5 472 68892 150 0 2 315 chain 4741 chr2 243199373 + 25991892 25991945 U2 167 + 0 53 197999 53 chain 22066 chr2 243199373 + 26064570 26064831 AluY 311 + 36 298 119937 96 0 1 165 chain 23213 chr2 243199373 + 26082918 26083209 AluSp 311 + 10 304 114626 68 1 11 208 7 0 7 chain 13010 chr2 243199373 + 26094472 26094615 AluSp 311 - 24 167 148204 143 chain 9574 chr2 243199373 + 26095824 26096034 L1PB1 5432 - 6 190 162723 4 1 0 18 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 14 20 10 6 6 0 16 7 6 32 chain 13572 chr2 243199373 + 26107103 26107275 MSTA 426 + 0 196 146084 108 0 21 5 0 3 59 chain 13737 chr2 243199373 + 26107595 26107755 L1PA7 6471 + 6307 6467 145477 160 chain 5614 chr2 243199373 + 26116087 26116155 FLAM_A 137 - 7 75 188941 68 chain 153396 chr2 243199373 + 26132611 26134456 SVA_D 2077 - 16 2010 24171 322 0 10 187 1 0 141 9 8 4 0 1 14 49 0 193 1 265 111 0 1 38 80 0 689 0 4 6 chain 3196 chr2 243199373 + 26133289 26133338 SVA_D 2077 - 1006 1057 134818 27 0 1 8 0 1 14 chain 2531 chr2 243199373 + 26133681 26133761 SVA_D 2077 - 1427 1507 164368 80 chain 126014 chr2 243199373 + 26138187 26139744 LTR12C 1709 + 0 1709 29094 287 4 0 13 6 7 31 0 43 269 0 119 68 1 0 75 0 2 42 10 0 156 1 0 5 3 1 106 0 4 19 0 1 50 10 11 316 1 0 84 chain 5986 chr2 243199373 + 26192263 26192345 L1PB1 5432 + 5346 5424 185376 24 1 0 23 1 0 11 1 0 14 1 0 6 chain 20443 chr2 243199373 + 26214281 26214549 AluSx 319 + 8 286 125776 44 10 7 206 0 13 8 chain 6762 chr2 243199373 + 26265552 26265635 U6 107 + 9 92 179230 83 chain 7738 chr2 243199373 + 26270009 26270265 L1MD2 1676 - 54 298 172670 15 109 107 60 1 0 14 15 7 36 1 0 5 chain 19074 chr2 243199373 + 26274334 26274622 AluSc 308 + 0 279 129893 48 18 14 69 13 9 117 2 1 21 chain 21792 chr2 243199373 + 26289303 26289638 THE1C 375 - 0 371 121050 126 10 33 10 18 27 26 7 11 138 chain 23450 chr2 243199373 + 26303800 26304144 THE1B 368 + 0 356 113384 47 0 9 8 9 1 54 1 12 41 5 4 104 7 8 68 chain 5527 chr2 243199373 + 26308420 26308491 MER50 708 + 530 601 189772 71 chain 6110 chr2 243199373 + 26369810 26369883 MSTD 398 + 325 398 184342 73 chain 3405 chr2 243199373 + 26408549 26408591 MER103C 291 - 134 176 217001 42 chain 7218 chr2 243199373 + 26431952 26432045 MER20 218 - 67 159 175949 45 0 1 25 2 0 21 chain 7160 chr2 243199373 + 26518482 26518608 L1MB2 1706 - 217 346 176334 54 24 27 48 chain 8375 chr2 243199373 + 26550773 26550872 MSTD 398 - 300 398 168995 22 1 0 76 chain 7222 chr2 243199373 + 26573774 26573884 MER47B 469 - 71 177 175932 82 16 12 12 chain 161639 chr2 243199373 + 26592737 26594777 SVA_D 2077 - 10 2077 23108 666 4 0 13 24 0 4 1 0 27 0 1 167 0 37 114 0 2 89 3 0 5 86 0 24 51 0 12 3 0 15 0 40 252 0 116 406 0 25 12 18 1 14 5 0 25 chain 4571 chr2 243199373 + 26593854 26593940 SVA_D 2077 - 735 821 122060 86 chain 2338 chr2 243199373 + 26593964 26594008 SVA_D 2077 - 845 889 122060 44 chain 24249 chr2 243199373 + 26606464 26606753 AluSg 306 + 0 292 108947 73 0 2 33 0 1 183 chain 30003 chr2 243199373 + 26650320 26650892 L1MA3 4352 - 20 559 84797 4 1 0 14 7 6 20 1 0 6 1 0 24 2 0 22 4 0 61 136 113 269 chain 29108 chr2 243199373 + 26658590 26659168 L1PA15 4387 - 36 542 88516 19 54 6 11 3 1 32 29 26 34 0 1 4 1 0 9 4 0 23 2 1 54 5 4 17 10 9 86 11 1 80 1 0 41 3 1 25 0 1 20 chain 26474 chr2 243199373 + 26673606 26673913 L1PA7 6471 - 8 316 98153 147 0 1 160 chain 30573 chr2 243199373 + 26691554 26691931 L1PA5 6144 + 5768 6143 83255 364 3 1 10 chain 36094 chr2 243199373 + 26716416 26716875 LTR71A 459 + 1 456 74770 194 6 0 125 0 1 99 0 1 35 chain 23562 chr2 243199373 + 26762323 26762607 AluSp 311 + 2 288 112783 261 4 6 19 chain 3803 chr2 243199373 + 26794601 26794643 5S 121 - 79 121 210335 42 chain 19948 chr2 243199373 + 26862064 26862298 L1PA7 6471 - 1 233 127309 11 2 0 221 chain 16551 chr2 243199373 + 26863815 26864038 MER30 238 + 0 238 136792 60 1 0 46 5 20 97 0 1 14 chain 30336 chr2 243199373 + 26879109 26879426 AluYb8 318 - 1 318 83824 317 chain 60955 chr2 243199373 + 26887737 26888451 SVA_B 1603 - 0 745 52357 285 1 2 26 1 0 147 1 0 179 0 38 35 1 0 11 10 6 10 1 0 6 chain 3426 chr2 243199373 + 26899976 26900014 MSTC 436 + 368 406 216639 38 chain 3630 chr2 243199373 + 26928135 26928177 MIRb 242 - 99 141 213149 42 chain 2847 chr2 243199373 + 26939095 26939138 MIRc 230 + 97 140 227886 33 1 0 4 0 1 5 chain 84335 chr2 243199373 + 26972732 26973731 LTR5_Hs 974 + 0 966 41774 8 0 4 870 41 4 80 chain 13995 chr2 243199373 + 26976789 26976970 LTR26B 539 - 357 539 144596 120 0 1 61 chain 38488 chr2 243199373 + 26985279 26986112 MER4E1 777 + 0 767 71458 279 347 267 87 0 12 107 0 2 13 chain 24664 chr2 243199373 + 27004016 27004436 MSTA 426 - 0 426 106643 51 5 0 57 10 18 34 6 5 25 5 3 45 1 0 20 39 46 122 chain 67114 chr2 243199373 + 27017555 27018306 SVA_D 2077 - 0 963 49610 9 13 0 526 0 225 203 chain 27096 chr2 243199373 + 27028409 27028798 THE1C 375 - 0 375 95956 25 1 0 41 18 8 74 0 3 34 1 0 5 1 2 58 3 0 65 3 0 60 chain 90253 chr2 243199373 + 27037156 27038455 LTR12C 1709 + 0 1709 39557 220 0 1 117 16 59 67 4 72 114 0 278 143 0 47 90 24 0 16 11 4 67 39 38 42 9 11 235 21 20 34 0 4 30 chain 13277 chr2 243199373 + 27043069 27043433 MLT1C 463 - 39 431 147182 9 1 2 18 0 3 50 81 85 33 46 64 21 13 14 62 3 4 27 chain 11501 chr2 243199373 + 27057579 27057822 L1MC2 1988 + 15 239 154293 53 1 0 8 6 0 16 7 0 8 9 0 48 0 1 4 1 0 21 42 46 19 chain 5562 chr2 243199373 + 27076926 27077032 MLT2C1 407 - 282 390 189463 52 29 31 25 chain 28730 chr2 243199373 + 27090312 27090622 AluYa5 310 - 5 310 90206 10 5 0 295 chain 3520 chr2 243199373 + 27096298 27096335 MER20 218 + 46 83 215062 37 chain 13007 chr2 243199373 + 27096630 27096808 MLT2B2 565 - 386 561 148220 33 1 0 84 7 5 53 chain 9286 chr2 243199373 + 27113526 27113636 MLT1B 390 - 0 110 164137 110 chain 31650 chr2 243199373 + 27125488 27125930 MER41A 554 + 0 441 81404 209 26 25 85 3 2 75 0 1 44 chain 6806 chr2 243199373 + 27152399 27152534 MER1B 344 + 231 344 178904 34 42 20 59 chain 28729 chr2 243199373 + 27196414 27196722 AluYb8 318 - 11 318 90213 104 1 0 203 chain 23815 chr2 243199373 + 27213854 27214130 AluY 311 + 15 291 111393 276 chain 21444 chr2 243199373 + 27219388 27219669 AluYc 301 + 0 266 122351 120 0 2 73 18 1 70 chain 4834 chr2 243199373 + 27219997 27220114 MER1B 344 - 1 127 196969 26 1 6 25 40 44 25 chain 14166 chr2 243199373 + 27224047 27224225 Tigger3c 601 - 62 240 143996 178 chain 7254 chr2 243199373 + 27268984 27269078 L1MC2 1988 - 1002 1096 175740 94 chain 3425 chr2 243199373 + 27273649 27273686 tRNA-Tyr-TAC 38 + 0 37 216674 37 chain 6415 chr2 243199373 + 27274081 27274154 tRNA-Ala-GCY 73 + 0 73 181912 73 chain 102573 chr2 243199373 + 27333552 27334885 LTR12C 1709 - 0 1709 36114 66 1 0 11 6 5 374 1 0 25 11 4 90 0 207 73 0 118 233 1 2 30 5 7 73 10 53 78 0 1 227 5 19 13 chain 4246 chr2 243199373 + 27344204 27344256 MER1B 344 - 3 55 203919 52 chain 4343 chr2 243199373 + 27363779 27363827 HY4 93 - 0 48 202687 48 chain 27778 chr2 243199373 + 27364609 27365297 MER4A 717 + 65 449 93769 57 317 0 55 0 17 88 4 1 33 1 0 133 chain 33061 chr2 243199373 + 27385975 27386712 MER57A1 433 + 1 433 79116 77 1 3 8 308 0 182 6 7 155 chain 6946 chr2 243199373 + 27387067 27387154 MER72 723 + 8 95 177851 72 0 1 5 1 0 9 chain 34566 chr2 243199373 + 27387197 27388074 MER4B 649 - 30 649 76797 57 1 0 17 15 23 36 313 0 46 18 14 4 1 0 61 2 0 3 3 0 9 5 18 99 0 1 32 0 42 39 1 2 82 3 4 30 chain 11410 chr2 243199373 + 27390100 27390245 LTR56 451 + 181 327 154644 114 3 4 28 chain 20125 chr2 243199373 + 27398502 27398753 AluSp 311 - 14 254 126753 11 11 0 229 chain 4946 chr2 243199373 + 27406094 27406156 MSTD 398 + 89 152 195740 17 0 1 45 chain 5452 chr2 243199373 + 27407938 27408011 MER53 195 + 0 73 190508 8 1 0 13 0 1 51 chain 22278 chr2 243199373 + 27411305 27411599 AluSp 311 + 0 295 119001 64 8 10 199 2 1 21 chain 15677 chr2 243199373 + 27418481 27418659 L1PA3long 6157 - 0 176 139345 5 2 0 171 chain 19226 chr2 243199373 + 27418659 27418864 L1PA3long 6157 + 5660 5865 129448 205 chain 15429 chr2 243199373 + 27428418 27428621 MER107 203 - 2 203 140105 31 7 3 45 0 2 120 chain 25475 chr2 243199373 + 27433624 27433919 AluY 311 + 16 310 102332 4 1 0 103 1 0 9 0 1 177 chain 28959 chr2 243199373 + 27438790 27439244 LTR7B 505 - 10 505 89181 41 14 13 79 1 0 62 0 88 17 66 11 69 0 10 105 chain 23972 chr2 243199373 + 27448163 27448468 AluSp 311 - 1 300 110492 253 11 5 41 chain 26164 chr2 243199373 + 27470017 27470312 AluYc3 301 - 5 301 99352 181 1 2 113 chain 7062 chr2 243199373 + 27515631 27515723 L1MB3 1562 - 183 274 177013 27 1 0 64 chain 43553 chr2 243199373 + 27523850 27524695 MER41A 554 - 24 554 64739 142 315 0 388 chain 21233 chr2 243199373 + 27554202 27554481 AluSc 308 - 19 298 123084 69 16 17 85 1 0 108 chain 7322 chr2 243199373 + 27562313 27562431 MER96B 391 + 223 330 175292 42 15 0 17 0 4 44 chain 138293 chr2 243199373 + 27581650 27583122 SVA_F 1814 + 0 1810 26436 722 0 96 68 0 242 682 chain 6951 chr2 243199373 + 27585311 27585395 L1PA6 6164 + 6077 6161 177802 84 chain 21805 chr2 243199373 + 27630653 27630927 AluSp 311 + 20 295 120999 46 6 7 222 chain 3703 chr2 243199373 + 27643103 27643272 MLT1D 503 - 177 378 211896 38 111 143 20 chain 30165 chr2 243199373 + 27669547 27669865 AluYb8 318 - 0 318 84291 318 chain 3324 chr2 243199373 + 27673784 27673867 MER33 330 + 201 279 218496 18 26 23 6 2 0 31 chain 76191 chr2 243199373 + 27682845 27683813 LTR5_Hs 974 + 0 974 45368 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 15341 chr2 243199373 + 27686293 27686515 MER30 238 + 0 238 140365 24 4 22 61 14 11 104 0 1 15 chain 5999 chr2 243199373 + 27742853 27743031 MER53 195 + 0 195 185249 64 77 104 13 10 0 14 chain 51910 chr2 243199373 + 27751986 27753174 L1MA2 4263 + 3221 4105 57676 65 0 7 35 1 0 170 6 7 29 416 62 62 5 4 134 2 0 5 0 2 4 0 1 34 0 51 63 11 9 93 14 7 4 0 1 35 chain 21000 chr2 243199373 + 27754171 27754568 MSTA 426 + 0 425 123917 123 120 134 39 9 23 106 chain 4008 chr2 243199373 + 27756250 27756302 LTR32 486 - 420 472 207257 24 1 0 17 0 1 10 chain 85833 chr2 243199373 + 27761974 27762966 SVA_E 1901 - 0 1012 41220 19 1 0 129 8 0 485 1 0 10 0 5 31 0 1 80 1 0 39 18 45 4 0 1 125 3 0 38 chain 24387 chr2 243199373 + 27763024 27763363 SVA_F 1814 - 600 1142 108153 27 1 0 8 37 10 4 1 0 42 1 0 158 0 233 60 chain 2636 chr2 243199373 + 27763060 27763097 SVA_F 1814 - 734 771 129622 37 chain 2595 chr2 243199373 + 27763363 27763392 SVA_F 1814 - 782 811 122224 29 chain 77499 chr2 243199373 + 27763409 27764309 SVA_D 2077 - 1179 2065 44736 689 4 3 13 5 0 139 11 0 12 0 4 7 1 0 19 chain 5219 chr2 243199373 + 27769698 27769770 MER96B 391 + 96 166 192838 12 1 0 21 1 0 37 chain 174021 chr2 243199373 + 27779578 27781757 SVA_E 1901 - 5 1901 21589 143 6 0 702 270 0 124 4 0 82 15 14 14 1 0 673 1 0 144 chain 6310 chr2 243199373 + 27780466 27780662 SVA_E 1901 - 886 1084 112061 36 7 13 39 4 0 110 chain 106347 chr2 243199373 + 27816661 27817994 SVA_A 1864 - 263 1843 35166 274 38 47 36 3 0 100 1 0 13 3 0 38 3 0 22 14 11 37 3 0 39 3 0 35 3 260 668 chain 6222 chr2 243199373 + 27829561 27829675 MLT1E2 623 - 33 141 183397 62 24 19 4 1 0 23 chain 4754 chr2 243199373 + 27902725 27902797 LTR16A1 462 - 49 118 197871 37 7 4 28 chain 106312 chr2 243199373 + 27913599 27915644 L1PB3 3668 - 2016 3583 35180 156 15 1 5 0 1 4 1 0 85 2 0 186 8 3 219 13 17 56 0 1 7 0 1 21 7 6 49 1 4 16 321 9 61 156 0 26 2 1 61 8 11 19 1 3 152 0 3 93 0 1 15 0 2 5 3 4 31 0 4 50 0 1 125 3 0 10 4 2 10 11 4 9 1 0 17 chain 3529 chr2 243199373 + 27954007 27954044 MIR 256 - 147 184 214888 37 chain 29510 chr2 243199373 + 27956325 27956695 THE1C 375 - 0 375 86603 22 7 6 329 0 6 12 chain 2939 chr2 243199373 + 27977333 27977370 MIR3 191 + 94 130 226345 20 1 0 16 chain 5020 chr2 243199373 + 27987630 27987691 MER5A1 166 - 3 64 194931 61 chain 29550 chr2 243199373 + 28006839 28007149 AluYa5 310 - 0 310 86418 310 chain 23599 chr2 243199373 + 28008361 28008642 AluSg7 307 + 12 294 112594 119 1 2 161 chain 5844 chr2 243199373 + 28011758 28011924 L1ME1 1623 + 258 420 186736 48 10 0 8 1 0 5 58 65 36 chain 13074 chr2 243199373 + 28025006 28025170 MSTA 426 - 233 397 147936 164 chain 69328 chr2 243199373 + 28034955 28035734 L1PA5 6144 + 5348 6144 48667 105 0 15 341 0 2 333 chain 4723 chr2 243199373 + 28055094 28055204 MER53 195 + 28 168 198243 36 37 67 37 chain 42590 chr2 243199373 + 28059241 28059856 L1PA16 3655 + 2472 3085 65913 137 1 0 65 1 0 229 12 14 43 10 9 21 12 10 30 4 5 50 chain 5963 chr2 243199373 + 28075037 28075213 MER3 215 + 8 196 185575 24 0 1 29 88 99 35 chain 203015 chr2 243199373 + 28092382 28094997 Charlie3 2679 - 0 2636 18993 63 2 1 370 7 8 78 1 0 41 1 0 652 0 1 178 0 1 22 0 3 331 29 20 106 6 29 74 2 1 30 1 0 45 0 1 71 0 10 121 5 0 379 chain 76958 chr2 243199373 + 28100900 28101747 L1PA3long 6157 - 0 848 44996 252 1 2 594 chain 105367 chr2 243199373 + 28102514 28104780 L1PREC2 3366 + 1378 3025 35405 219 1 0 157 4 10 12 1 61 51 0 1 124 8 9 269 0 7 93 6 5 28 58 60 103 1 0 101 0 1 38 655 0 25 2 0 28 0 3 23 1 0 44 1 0 4 3 0 13 33 24 13 7 2 15 12 10 20 4 1 11 31 17 26 6 4 15 chain 5730 chr2 243199373 + 28111623 28111734 MER58C 217 + 69 206 187840 42 23 48 42 0 1 4 chain 3045 chr2 243199373 + 28112716 28112752 MIRc 230 - 50 86 224105 36 chain 26691 chr2 243199373 + 28133718 28134093 THE1C 375 + 0 375 97347 125 13 14 211 11 10 15 chain 3836 chr2 243199373 + 28149896 28149942 L1MA5A 2387 - 109 155 209835 46 chain 64163 chr2 243199373 + 28159117 28159825 L1PA3long 6157 + 5449 6157 50934 708 chain 6267 chr2 243199373 + 28174595 28174715 L1PB1 5432 - 12 124 183022 16 1 0 13 1 0 21 1 0 23 3 1 10 12 9 19 chain 110947 chr2 243199373 + 28190396 28191828 THE1B-int 1605 + 0 1605 33950 107 0 3 243 8 9 68 1 26 57 21 22 715 0 124 117 5 24 90 chain 26501 chr2 243199373 + 28191828 28192185 THE1B 368 + 0 368 98039 44 0 15 107 7 6 118 3 0 16 1 0 4 0 1 57 chain 4931 chr2 243199373 + 28205582 28205705 L1MB2 1706 - 197 330 195913 14 1 0 24 22 32 21 16 17 25 chain 44519 chr2 243199373 + 28207584 28208374 L1PB1 5432 - 10 737 63557 18 1 0 13 1 0 21 1 0 26 23 18 18 23 12 16 4 3 41 5 4 11 2 1 52 2 0 9 2 0 3 2 0 12 8 6 24 51 16 149 0 1 109 0 1 28 5 6 39 5 4 66 chain 10159 chr2 243199373 + 28214861 28215129 L1MB7 1623 - 387 617 159808 13 4 0 14 6 2 10 5 0 9 3 1 16 65 39 78 10 13 35 chain 21430 chr2 243199373 + 28224446 28224807 MSTB 430 - 40 430 122407 25 11 10 49 10 14 82 0 1 5 7 14 8 2 0 49 24 44 89 chain 92881 chr2 243199373 + 28241022 28242825 L1PB1 5432 - 136 1418 38692 15 5 4 17 24 2 21 1 0 16 2 1 52 2 0 9 6 2 13 1 0 6 1 0 24 1 0 8 0 3 238 17 8 35 4 15 88 0 1 79 499 5 4 0 1 615 chain 35420 chr2 243199373 + 28241713 28242193 L1PA8 5853 - 0 473 75654 93 1 0 19 2 1 47 6 5 9 2 1 70 2 0 42 1 0 186 chain 60633 chr2 243199373 + 28248870 28249591 L1PA7 6471 + 5731 6452 52501 576 1 5 7 4 0 133 chain 29154 chr2 243199373 + 28263158 28263466 AluYa5 310 - 2 310 88289 308 chain 4662 chr2 243199373 + 28277843 28277926 L1PA15 4387 + 4218 4298 198938 49 6 3 8 0 3 5 3 0 12 chain 104749 chr2 243199373 + 28326900 28328059 L1PA5 6144 + 4974 6137 35556 301 0 4 858 chain 145860 chr2 243199373 + 28335093 28336856 L1PA7 6471 - 18 1840 25197 591 1 4 154 1 4 82 1 0 236 4 52 52 5 6 38 7 11 446 0 3 105 12 10 28 chain 27511 chr2 243199373 + 28336858 28337200 L1PA7 6471 + 4278 4621 94625 282 0 1 10 1 0 7 0 1 42 chain 86849 chr2 243199373 + 28341021 28342065 L1PA8A 6298 - 390 1432 40837 192 0 1 225 3 1 169 7 0 54 0 4 162 0 2 232 chain 98234 chr2 243199373 + 28349012 28350077 L1PA3long 6157 - 0 1070 37228 683 0 1 165 0 4 217 chain 28437 chr2 243199373 + 28353948 28354247 AluYa5 310 - 11 310 91434 299 chain 42396 chr2 243199373 + 28407211 28407692 L1PA5 6144 - 14 501 66156 281 0 6 200 chain 7783 chr2 243199373 + 28415230 28415323 L1PA5 6144 + 6051 6144 172396 93 chain 3739 chr2 243199373 + 28532011 28532055 MLT1E3 631 - 217 262 211346 40 0 1 4 chain 119408 chr2 243199373 + 28552341 28553782 L1PA10 4194 + 2729 4161 31263 72 2 0 821 0 1 451 1 11 8 14 0 23 3 0 34 2 1 10 chain 75548 chr2 243199373 + 28594291 28595161 L1PA5 6144 + 5269 6138 45745 857 1 0 12 chain 4303 chr2 243199373 + 28650230 28650483 L1MB5 1630 + 1369 1619 203177 23 1 0 15 165 165 28 2 1 13 1 0 5 chain 8592 chr2 243199373 + 28682624 28682764 LTR56 451 - 163 310 167774 96 21 17 9 0 11 14 chain 112649 chr2 243199373 + 28695381 28696868 LTR12C 1709 + 0 1709 33486 38 47 46 127 1 3 55 1 26 43 0 43 81 1 0 4 1 0 4 5 4 176 0 119 68 1 0 234 0 47 28 1 0 72 17 10 399 1 0 82 chain 34955 chr2 243199373 + 28697805 28698284 LTR12F 595 - 11 595 76256 219 0 1 39 0 1 40 40 0 45 0 143 96 chain 29319 chr2 243199373 + 28704233 28704665 LTR7B 505 - 0 504 87440 51 14 13 79 1 0 51 1 89 27 35 11 69 0 10 104 chain 31405 chr2 243199373 + 28797759 28798230 L1PB2 3958 - 120 584 81807 7 0 1 55 2 1 21 2 0 72 1 0 20 0 1 43 1 0 37 0 1 32 4 2 45 0 3 22 11 9 15 2 0 13 2 0 64 chain 10336 chr2 243199373 + 28832976 28833121 L1PA8 5853 - 0 143 158956 92 2 1 17 4 3 30 chain 6388 chr2 243199373 + 28869321 28869434 MER30 238 + 127 228 182114 19 23 8 42 0 3 29 chain 6594 chr2 243199373 + 28873462 28873544 MER2 342 - 50 132 180503 82 chain 6244 chr2 243199373 + 28891562 28891708 MER5A 189 - 29 187 183219 32 42 54 40 6 0 6 0 6 20 chain 9545 chr2 243199373 + 28895037 28895213 THE1B 368 + 0 183 162859 47 32 39 25 0 3 6 2 0 53 1 0 10 chain 3130 chr2 243199373 + 28933277 28933314 MIR 256 - 0 37 222353 37 chain 72519 chr2 243199373 + 28964615 28965561 L1PREC2 3366 - 573 1527 47259 12 0 2 17 17 21 257 0 1 4 1 0 182 10 14 220 3 0 99 0 1 124 chain 29157 chr2 243199373 + 28965565 28966382 L1PA14 3548 + 3007 3456 88278 80 348 0 26 5 1 17 2 0 6 1 0 4 2 0 80 1 0 106 5 4 11 11 7 30 4 2 10 7 5 18 1 0 42 chain 18018 chr2 243199373 + 29009440 29009665 AluY 311 + 72 307 132807 52 9 22 5 3 0 156 chain 3883 chr2 243199373 + 29047826 29047934 MIR 256 - 27 144 209125 17 20 20 16 21 30 34 chain 27042 chr2 243199373 + 29103926 29104224 AluYf4 310 + 0 300 96143 273 0 2 25 chain 3606 chr2 243199373 + 29104395 29104494 L1MC4 1079 - 201 295 213538 41 44 39 14 chain 28429 chr2 243199373 + 29172281 29172683 MER1A 529 - 9 429 91465 54 6 5 152 6 8 78 11 28 95 chain 11666 chr2 243199373 + 29219695 29219894 L1MA4 2864 - 296 486 153614 42 12 1 15 14 13 84 4 7 28 chain 32186 chr2 243199373 + 29251780 29252333 L1PB1 5432 + 4771 5277 80551 67 0 1 130 9 18 85 4 0 31 71 28 6 1 0 9 1 0 10 6 2 9 2 0 53 2 1 15 1 0 41 chain 5633 chr2 243199373 + 29272166 29272237 L1MB3 1562 - 286 357 188737 71 chain 39389 chr2 243199373 + 29277746 29278186 L1PA5 6144 - 8 450 70183 89 0 1 56 0 1 295 chain 54523 chr2 243199373 + 29278413 29279072 PABL_A 660 + 0 660 56017 143 0 1 374 0 1 54 1 0 87 chain 22138 chr2 243199373 + 29308945 29309229 MLT2A1 477 - 193 477 119631 80 0 1 23 0 1 8 3 0 86 0 1 84 chain 261061 chr2 243199373 + 29314961 29317833 L1PA3long 6157 + 3277 6157 15639 118 0 1 640 0 3 1269 1 5 844 chain 8364 chr2 243199373 + 29323729 29323875 MLT2A2 560 - 19 191 169057 38 1 0 13 0 1 25 18 33 18 3 14 30 chain 73348 chr2 243199373 + 29362955 29363763 L1PA3long 6157 - 8 816 46862 808 chain 12900 chr2 243199373 + 29367399 29367556 L1PA7 6471 - 1 153 148626 7 5 0 145 chain 25809 chr2 243199373 + 29525101 29525402 AluSq10 312 + 0 298 100834 286 3 0 12 chain 32367 chr2 243199373 + 29525674 29526244 L1PA17 2846 + 2144 2693 80246 37 0 1 175 0 1 4 5 9 43 9 10 78 5 4 10 42 17 51 36 33 15 1 0 5 0 2 10 1 0 37 0 1 6 chain 9905 chr2 243199373 + 29528605 29528759 MER1A 529 - 34 182 161044 35 2 0 5 16 12 96 chain 35277 chr2 243199373 + 29575672 29576114 LTR8 732 + 0 447 75822 61 0 4 308 0 1 73 chain 33307 chr2 243199373 + 29598723 29599191 LTR19A 502 + 0 502 78721 178 0 37 81 0 1 133 45 41 31 chain 23972 chr2 243199373 + 29603278 29603590 AluSp 311 - 9 302 110491 16 3 0 154 16 0 123 chain 2815 chr2 243199373 + 29632987 29633019 Tigger3 1187 - 67 99 228555 32 chain 11739 chr2 243199373 + 29641460 29641612 L1PB4 2604 - 59 212 153304 132 0 1 20 chain 10317 chr2 243199373 + 29691789 29691918 MER85 139 - 0 139 159055 40 0 10 89 chain 6096 chr2 243199373 + 29713286 29713359 MER5A 189 + 0 73 184449 73 chain 3079 chr2 243199373 + 29716496 29716531 MIRb 242 + 107 142 223346 35 chain 8628 chr2 243199373 + 29724746 29724924 L1MB3 1562 - 145 356 167593 18 54 79 86 0 8 20 chain 5823 chr2 243199373 + 29726776 29726855 MADE1 96 + 1 96 186914 30 1 17 48 chain 32811 chr2 243199373 + 29731190 29731564 L1PA4 6152 + 5769 6143 79514 374 chain 206623 chr2 243199373 + 29735070 29737321 L1PA3long 6157 + 3701 5952 18746 714 1 0 324 0 1 1212 chain 44972 chr2 243199373 + 29777524 29778081 MER41A 554 + 0 554 63086 171 6 1 213 0 1 107 0 1 60 chain 21205 chr2 243199373 + 29794134 29794457 THE1D 372 + 0 332 123198 76 21 3 49 0 4 34 21 44 122 chain 26727 chr2 243199373 + 29800893 29801243 THE1B 368 + 0 367 97234 40 0 15 52 5 6 59 2 3 192 chain 26301 chr2 243199373 + 29845105 29845456 THE1A 353 - 0 353 98825 172 10 13 58 4 3 107 chain 13317 chr2 243199373 + 29849517 29849701 MLT1A 405 + 219 405 147021 133 11 13 40 chain 23975 chr2 243199373 + 29855516 29855894 THE1B 368 - 0 368 110480 78 3 0 96 32 25 52 10 11 58 0 1 34 3 1 12 chain 58249 chr2 243199373 + 29866611 29867262 L1PA4 6152 + 5488 6139 53834 651 chain 22221 chr2 243199373 + 29891582 29891936 THE1B 368 - 0 368 119258 56 7 6 66 1 0 10 1 0 12 5 9 9 1 0 6 6 8 17 10 20 28 0 2 119 chain 263679 chr2 243199373 + 29895049 29897956 L1PA3long 6157 - 5 2917 15499 1794 7 11 889 0 1 217 chain 77942 chr2 243199373 + 29918426 29919407 L1PA7 6471 + 5507 6470 44551 107 2 0 185 2 9 25 6 0 108 20 0 487 0 1 27 0 2 12 chain 7388 chr2 243199373 + 29919843 29919936 L1PA8 5853 + 5760 5853 174843 93 chain 29179 chr2 243199373 + 29975204 29975513 AluYg6 310 - 1 310 88155 309 chain 40976 chr2 243199373 + 30014034 30014499 L1PA7 6471 + 5998 6465 67941 203 0 1 119 0 1 143 chain 3842 chr2 243199373 + 30039868 30039986 MIR 256 - 68 184 209752 36 56 54 26 chain 124803 chr2 243199373 + 30046192 30047774 THE1B-int 1605 + 0 1605 29448 206 0 1 7 2 1 202 2 1 10 5 31 190 6 0 61 1 2 527 3 5 313 0 1 47 chain 27109 chr2 243199373 + 30047774 30048130 THE1B 368 + 0 368 95903 44 1 16 109 1 0 28 2 0 171 chain 145099 chr2 243199373 + 30050550 30052180 L1PA4 6152 + 4507 6143 25309 724 1 2 71 0 4 171 2 0 591 0 3 70 chain 7841 chr2 243199373 + 30075581 30075673 MLT1A0 366 + 51 143 172071 92 chain 44046 chr2 243199373 + 30098295 30098848 L1PA8 5853 - 0 549 64155 93 1 0 19 2 1 61 1 0 71 2 0 48 1 0 37 0 2 217 chain 2563 chr2 243199373 + 30099380 30099456 HAL1-2a_MD 234 - 196 230 232347 16 42 0 18 chain 3485 chr2 243199373 + 30099553 30099675 HAL1-2a_MD 234 - 94 153 215601 12 0 3 16 57 0 15 9 0 13 chain 22368 chr2 243199373 + 30147024 30147269 L1PA4 6152 + 5905 6151 118637 133 0 1 112 chain 51788 chr2 243199373 + 30149648 30150255 L1PA6 6164 + 5539 6147 57763 471 0 1 136 chain 27780 chr2 243199373 + 30161416 30161818 MLT2A1 477 + 0 398 93766 36 18 19 37 1 0 50 0 1 26 0 4 84 0 1 126 11 1 13 chain 7354 chr2 243199373 + 30167461 30168009 MER66C 541 + 0 261 175071 49 1 0 21 436 149 36 0 1 5 chain 24450 chr2 243199373 + 30181606 30181957 THE1B 368 - 3 368 107805 183 7 6 10 1 0 19 3 0 5 7 11 76 0 15 40 chain 16106 chr2 243199373 + 30204597 30204817 MER30 238 + 0 238 138036 90 0 3 5 1 0 9 4 21 32 1 0 78 chain 11163 chr2 243199373 + 30206498 30206673 L1MC2 1988 - 361 544 155574 57 10 12 54 7 13 47 chain 45361 chr2 243199373 + 30215882 30216801 PABL_B 668 - 0 668 62646 80 0 2 146 0 3 86 6 5 61 16 60 71 0 5 48 308 4 97 chain 169314 chr2 243199373 + 30223457 30225337 L1PA4 6152 + 4251 6143 22141 992 0 4 57 0 4 514 0 3 213 0 1 104 chain 27608 chr2 243199373 + 30255993 30256299 AluSp 311 - 0 306 94328 306 chain 5917 chr2 243199373 + 30301562 30301684 LTR50 688 + 98 223 186023 40 39 42 43 chain 22947 chr2 243199373 + 30302469 30302764 L1PA5 6144 + 5799 6135 115876 5 1 0 127 11 56 6 3 0 142 chain 50720 chr2 243199373 + 30309243 30309870 PABL_A 660 - 32 660 58491 50 1 0 62 0 1 236 0 1 50 1 0 87 0 1 140 chain 4692 chr2 243199373 + 30310299 30310434 LTR16C 481 + 301 438 198615 37 64 66 34 chain 137009 chr2 243199373 + 30322479 30324316 L1PB1 5432 - 156 1942 26640 39 1 0 16 2 1 48 37 30 6 1 0 13 0 1 7 13 0 12 5 0 299 1 0 95 0 1 87 2 0 110 0 1 394 0 1 238 3 0 145 1 4 171 37 13 54 chain 6392 chr2 243199373 + 30334630 30334701 MER50 708 - 24 95 182087 71 chain 25966 chr2 243199373 + 30411236 30411621 MER51B 395 + 0 383 100151 34 18 5 136 4 12 58 1 0 88 1 5 45 chain 40743 chr2 243199373 + 30412458 30412987 LTR10G 522 + 0 522 68253 40 1 0 153 2 1 40 1 0 88 3 1 29 0 1 96 3 0 73 chain 3626 chr2 243199373 + 30421701 30421741 MLT1D 503 + 399 439 213220 40 chain 22803 chr2 243199373 + 30474924 30475246 THE1C 375 + 0 320 116560 115 19 16 51 1 2 136 chain 19023 chr2 243199373 + 30484158 30484409 L1PA8 5853 + 5596 5843 130057 12 2 0 32 0 2 36 2 1 14 1 0 47 2 1 19 1 0 83 chain 64255 chr2 243199373 + 30491759 30492532 LTR17 781 + 0 781 50894 327 1 0 35 6 14 397 0 1 7 chain 40867 chr2 243199373 + 30518198 30518699 LTR10D 510 - 0 508 68069 246 0 2 175 11 16 69 chain 11465 chr2 243199373 + 30552324 30552457 THE1A 353 - 0 133 154451 133 chain 26980 chr2 243199373 + 30552486 30552809 L1PA7 6471 - 10 333 96346 323 chain 26153 chr2 243199373 + 30554374 30554739 THE1B 368 + 0 368 99392 169 1 0 31 0 3 11 0 4 6 7 6 12 1 0 64 7 6 56 chain 4249 chr2 243199373 + 30563651 30563703 MER33 330 - 244 296 203883 52 chain 45998 chr2 243199373 + 30566013 30566526 MER9a1 513 - 0 513 62044 513 chain 22482 chr2 243199373 + 30593174 30593454 AluSq2 311 + 9 287 118099 83 1 2 26 5 0 12 0 2 153 chain 4434 chr2 243199373 + 30615161 30615235 L1MB2 1706 + 1606 1683 201534 10 1 0 10 6 10 47 chain 6150 chr2 243199373 + 30655226 30655306 MADE1 96 + 0 96 183982 29 0 16 51 chain 23418 chr2 243199373 + 30662197 30662549 THE1C 375 - 39 375 113553 9 4 0 129 30 23 129 6 0 21 0 1 24 chain 15416 chr2 243199373 + 30664230 30664419 AluSp 311 - 8 199 140145 21 0 1 143 0 1 25 chain 9288 chr2 243199373 + 30667811 30667964 MER1A 529 + 376 524 164120 68 30 25 55 chain 131742 chr2 243199373 + 30689819 30691290 L1PA5 6144 - 12 1478 27687 446 0 2 390 1 0 386 6 0 242 chain 54155 chr2 243199373 + 30731438 30732306 L1PA13 3608 - 73 901 56258 14 6 0 3 1 0 16 6 1 10 6 3 22 1 0 18 2 0 5 2 0 39 24 8 5 1 0 29 1 0 28 1 0 61 2 0 104 1 0 5 10 9 23 1 0 150 9 10 100 4 5 43 0 2 35 12 13 25 2 1 41 chain 36219 chr2 243199373 + 30736467 30736917 MER4A1 472 + 0 472 74602 14 0 2 209 0 21 34 1 0 192 chain 54369 chr2 243199373 + 30741398 30742026 HERV17-int 4347 + 2267 2906 56119 22 0 10 257 0 1 349 chain 43829 chr2 243199373 + 30743752 30744291 MER41A 554 + 0 539 64409 539 chain 28618 chr2 243199373 + 30759965 30760266 AluYb8 318 + 0 301 90664 301 chain 56212 chr2 243199373 + 30771068 30771818 MER4E 760 - 0 754 55012 469 4 0 12 6 11 4 1 0 88 11 5 11 0 9 133 0 1 11 chain 28689 chr2 243199373 + 30776400 30776699 AluYb8 318 + 1 300 90376 299 chain 16856 chr2 243199373 + 30806792 30806999 L1PA8A 6298 - 8 215 135957 207 chain 145372 chr2 243199373 + 30819942 30821833 L1PA10 4194 - 33 1918 25272 13 1 0 32 6 4 4 1 0 580 10 10 66 14 11 100 3 10 48 1 0 460 11 2 9 0 2 66 0 1 60 3 7 49 8 0 152 2 5 48 5 7 139 chain 8427 chr2 243199373 + 30827243 30827395 MER58B 340 - 16 194 168702 54 35 57 14 0 4 49 chain 88607 chr2 243199373 + 30828906 30830028 L1PA8A 6298 + 4630 5757 40142 197 1 3 663 0 4 6 2 1 253 chain 33986 chr2 243199373 + 30831194 30831671 Tigger3b 1229 + 719 1207 77637 47 1 4 41 1 0 51 0 1 127 1 11 108 19 17 81 chain 76132 chr2 243199373 + 30836337 30837305 LTR5_Hs 974 - 0 974 45404 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 155649 chr2 243199373 + 30846267 30848275 L1PBa 3878 + 801 2853 23898 24 0 6 15 0 3 83 0 2 50 16 11 64 4 7 29 0 2 190 4 0 94 0 4 38 2 0 115 0 1 43 0 1 31 5 0 8 0 1 203 1 2 221 0 1 231 0 5 155 3 20 126 0 4 43 0 4 28 0 4 36 0 1 86 0 1 4 1 0 55 chain 35930 chr2 243199373 + 30849941 30850405 LTR71A 459 - 0 459 74981 74 3 0 268 8 6 111 chain 24946 chr2 243199373 + 30880523 30880895 THE1C 375 - 0 375 105076 26 2 1 27 0 1 97 8 11 25 2 0 8 6 7 83 5 6 83 chain 72368 chr2 243199373 + 30919953 30920951 LTR13 1007 + 0 1007 47315 73 2 0 284 7 8 16 4 5 242 2 1 54 27 28 41 0 9 44 11 13 143 0 2 6 2 0 6 3 1 31 chain 279237 chr2 243199373 + 30940811 30943985 L1PA5 6144 - 0 3186 14682 339 1 0 511 1 0 65 0 3 157 0 3 408 0 1 120 1 3 38 1 2 1247 0 4 285 chain 8047 chr2 243199373 + 30972023 30972144 Tigger4a 237 + 0 122 170775 17 8 0 8 3 12 85 chain 24150 chr2 243199373 + 30995684 30995989 AluSc5 308 - 10 308 109473 58 13 5 39 0 1 195 chain 9358 chr2 243199373 + 31013541 31013669 MER85 139 - 2 139 163761 27 13 22 88 chain 434846 chr2 243199373 + 31037808 31042692 L1PA4 6152 + 1256 6151 9198 1549 0 1 444 0 4 1005 0 3 1042 0 4 694 1 0 149 chain 18054 chr2 243199373 + 31044234 31044434 L1PA4 6152 - 12 214 132715 51 0 2 149 chain 186959 chr2 243199373 + 31054156 31056828 MER57-int 2662 + 40 2643 20337 30 44 29 9 1 0 75 0 5 75 0 1 49 2 0 63 0 10 307 11 7 62 13 14 17 0 2 24 2 0 22 0 4 26 4 5 70 18 8 49 4 1 79 0 1 7 4 0 224 0 3 519 11 0 4 6 0 13 0 2 49 8 4 401 0 2 21 1 0 91 18 12 68 35 17 22 1 0 5 1 0 10 4 1 24 1 0 6 12 7 29 3 0 18 chain 468242 chr2 243199373 + 31071516 31077084 L1PA5 6144 + 0 6131 8098 91 6 755 170 0 1 921 9 4 39 0 7 359 0 2 556 211 10 243 1 0 91 1 0 1031 0 10 1521 0 3 77 1 0 240 chain 16281 chr2 243199373 + 31073672 31073865 L1PA4 6152 + 5946 6138 137530 188 1 0 4 chain 52858 chr2 243199373 + 31080208 31081090 L1MA3 4352 + 3427 4303 57096 151 37 38 172 11 24 26 2 0 13 0 4 233 50 31 47 5 8 10 3 4 7 1 0 19 13 15 6 4 0 25 2 0 22 1 0 6 1 0 15 chain 29247 chr2 243199373 + 31091352 31091664 AluYa5 310 + 0 310 87810 97 2 0 213 chain 61928 chr2 243199373 + 31098228 31099023 L1P3 4156 + 3303 4102 51928 339 0 2 347 9 11 100 chain 550604 chr2 243199373 + 31127064 31133089 L1PA2 6032 + 1 6032 1365 73 0 1 182 1 0 1820 0 4 117 1 0 1941 0 3 1890 chain 55878 chr2 243199373 + 31138612 31139276 PABL_B 668 + 0 667 55193 52 0 2 99 0 1 127 1 0 7 0 1 378 chain 46211 chr2 243199373 + 31175141 31175639 L1PA2 6032 + 5534 6032 61840 498 chain 3803 chr2 243199373 + 31209485 31209529 MADE1 96 - 52 96 210348 44 chain 4986 chr2 243199373 + 31211593 31211735 MER5A 189 - 23 157 195290 16 40 31 34 19 20 33 chain 148414 chr2 243199373 + 31284925 31286741 L1PA8 5853 - 0 1814 24823 93 1 0 17 1 0 52 1 0 8 6 5 68 2 0 24 0 2 22 1 0 553 12 9 142 1 4 7 0 1 651 0 2 154 chain 12928 chr2 243199373 + 31293842 31294107 L1PB1 5432 + 5181 5423 148513 39 2 1 15 1 0 32 13 12 16 1 0 6 17 7 18 2 0 4 1 0 15 2 0 24 1 0 21 1 0 11 1 0 12 1 0 9 chain 32661 chr2 243199373 + 31316860 31317304 LTR7B 505 + 0 489 79747 108 0 10 57 0 38 12 0 25 6 1 0 24 29 0 82 1 0 25 0 3 99 chain 44298 chr2 243199373 + 31336523 31337079 LTR19B 566 + 0 566 63826 51 0 1 26 1 0 11 0 5 198 1 5 216 10 11 42 chain 64660 chr2 243199373 + 31401958 31402752 L1PA6 6164 - 16 820 50718 57 0 2 113 5 6 357 0 7 262 chain 53478 chr2 243199373 + 31404388 31404980 L1PA3long 6157 - 0 590 56700 5 2 0 585 chain 149818 chr2 243199373 + 31404980 31406621 L1PA3long 6157 + 3924 5565 24643 1641 chain 35779 chr2 243199373 + 31420899 31421348 MER4A1 472 + 0 472 75164 161 0 1 63 0 21 28 7 6 65 0 2 125 chain 2917 chr2 243199373 + 31493032 31493072 LTR36 617 - 488 528 226730 40 chain 20781 chr2 243199373 + 31503509 31503768 AluSp 311 - 5 258 124675 8 5 0 11 2 0 28 0 1 205 chain 44184 chr2 243199373 + 31505084 31505638 MER41A 554 + 0 554 63962 533 0 1 4 2 1 15 chain 47513 chr2 243199373 + 31506328 31506884 LTR10F 562 + 0 562 60831 149 0 1 57 0 1 20 0 3 5 0 1 325 chain 20587 chr2 243199373 + 31507246 31507571 MLT1A0 366 + 8 354 125343 39 0 1 104 0 1 38 52 71 92 chain 55102 chr2 243199373 + 31507579 31508294 LTR17 781 + 0 753 55641 59 1 0 97 1 0 171 1 0 135 0 1 15 10 6 212 1 45 12 chain 47185 chr2 243199373 + 31511506 31512155 PABL_A 660 - 12 660 61057 20 38 16 268 1 21 50 0 1 272 chain 407535 chr2 243199373 + 31528297 31533867 L1PB1 5432 - 5 5411 9864 5 2 0 9 0 1 8 1 0 13 1 0 21 1 0 24 2 0 9 13 10 19 15 6 6 4 0 15 1 0 44 3 0 16 2 1 53 18 12 9 1 0 8 1 0 24 89 0 12 2 1 28 45 0 34 5 12 125 0 2 20 0 1 239 11 8 23 0 1 250 12 4 22 6 7 122 1 0 463 0 8 799 0 4 84 4 5 215 4 14 74 0 1 41 9 0 340 1 2 337 0 3 275 0 1 24 0 1 102 15 7 6 0 2 368 5 4 332 6 9 137 2 1 52 7 8 76 8 0 7 5 0 61 7 8 278 1 2 31 chain 21079 chr2 243199373 + 31580887 31581126 L1P1 4361 + 2561 2800 123621 239 chain 22531 chr2 243199373 + 31631553 31631863 L1MA2 4263 + 3810 4110 117891 148 1 0 3 1 0 97 7 0 47 1 0 5 chain 23132 chr2 243199373 + 31635250 31635508 L1PA5 6144 + 5886 6144 114986 258 chain 127976 chr2 243199373 + 31659478 31660868 L1PA3long 6157 - 954 2344 28571 1390 chain 86525 chr2 243199373 + 31660868 31661830 L1PA3long 6157 + 5190 6154 40921 799 0 2 163 chain 27383 chr2 243199373 + 31662121 31662431 AluYf4 310 + 0 310 95018 310 chain 28932 chr2 243199373 + 31671777 31672131 THE1A 353 + 0 353 89313 109 2 1 243 chain 9221 chr2 243199373 + 31676432 31676564 MER57-int 2662 - 2431 2562 164446 88 0 2 9 2 0 24 1 0 8 chain 24877 chr2 243199373 + 31691013 31691364 THE1B 368 + 7 368 105471 162 1 0 29 14 16 18 10 18 26 3 4 88 chain 501904 chr2 243199373 + 31711959 31718661 L1PA6 6164 + 0 6162 6730 160 0 1 195 0 1 92 8 0 120 1 0 230 1 18 622 9 7 10 0 1 265 1 0 6 1 0 197 1 0 409 1 0 594 0 1 120 0 1 126 3 4 17 580 0 146 0 1 350 1 0 3 1 0 309 0 85 815 52 0 30 0 1 16 0 1 1031 0 2 6 2 0 14 0 2 140 4 0 13 chain 35675 chr2 243199373 + 31715263 31715718 L1PA5 6144 + 5679 6135 75298 239 0 1 63 7 11 6 4 0 136 chain 528259 chr2 243199373 + 31719227 31725311 L1PA4 6152 + 4 6143 4377 184 0 55 177 1 2 158 1 0 118 7 0 152 0 1 1810 0 1 32 0 5 509 0 1 2802 27 30 95 4 0 7 chain 20477 chr2 243199373 + 31727562 31727903 THE1B 368 - 28 368 125694 31 4 3 55 50 55 27 1 0 87 6 2 80 chain 5602 chr2 243199373 + 31730657 31730728 MER96B 391 - 34 104 189064 23 1 0 47 chain 126091 chr2 243199373 + 31743927 31745487 THE1A-int 1579 + 0 1577 29066 56 0 6 267 0 7 94 1 0 5 0 1 477 0 2 70 6 7 485 0 1 99 chain 25555 chr2 243199373 + 31745489 31745816 THE1A 353 + 0 353 101952 109 2 1 92 1 0 5 6 34 112 chain 105315 chr2 243199373 + 31801068 31802228 L1HS 6032 + 4870 6030 35424 1160 chain 4905 chr2 243199373 + 31811139 31811256 L1PB1 5432 - 10 122 196226 18 1 0 10 2 1 9 0 1 13 1 0 14 0 2 8 25 20 16 chain 63004 chr2 243199373 + 31812120 31812981 L1PA8 5853 + 5003 5853 51444 5 1 0 147 15 4 235 0 2 33 6 10 82 0 1 42 1 0 43 2 0 64 31 29 40 2 1 19 1 0 7 0 1 85 chain 14280 chr2 243199373 + 31815371 31815531 L1PA4 6152 - 1626 1786 143023 160 chain 111809 chr2 243199373 + 31815531 31816815 L1PA4 6152 + 4522 5800 33715 390 6 0 888 chain 29481 chr2 243199373 + 31816822 31817156 L1PA4 6152 + 5807 6141 86703 334 chain 31997 chr2 243199373 + 31817990 31818339 L1PA3long 6157 + 5808 6157 80870 349 chain 180106 chr2 243199373 + 31826064 31828545 L1PA11 4918 + 2089 4578 20981 158 0 1 34 0 3 34 2 1 19 4 7 53 0 1 68 0 1 85 0 1 161 0 5 121 4 5 75 0 2 45 0 1 251 14 10 73 0 1 27 1 0 143 0 5 429 8 0 16 1 0 5 0 1 119 1 0 5 1 2 267 0 1 4 0 11 53 18 13 68 2 0 14 2 1 19 35 31 15 1 0 13 2 0 11 chain 9241 chr2 243199373 + 31838771 31839098 THE1B 368 - 30 368 164346 19 14 13 53 81 84 34 80 88 35 0 1 11 chain 118879 chr2 243199373 + 31840241 31841910 THE1B-int 1605 + 0 1597 31463 76 0 4 323 0 1 28 0 24 9 0 2 55 1 0 105 30 29 224 100 0 116 1 0 5 18 19 69 0 1 254 1 0 109 6 4 45 0 1 94 chain 5503 chr2 243199373 + 31845607 31845672 Tigger1 2417 + 2339 2404 190022 65 chain 33867 chr2 243199373 + 31848705 31849132 L1PA11 4918 - 1770 2197 77832 427 chain 238074 chr2 243199373 + 31849437 31852484 L1PA6 6164 - 3 2963 16879 8 1 0 150 0 1 8 0 5 296 2 0 1323 0 4 289 0 1 121 1 2 257 5 3 349 106 0 13 54 61 29 20 25 15 chain 15831 chr2 243199373 + 31854228 31854416 LTR17 781 + 540 728 138849 188 chain 180411 chr2 243199373 + 31856280 31858506 HERV17-int 4347 + 21 4347 20950 6 1 0 51 1 0 34 2 0 27 1 0 125 1 2 4 0 1 27 1 0 29 0 430 589 3 1 117 7 8 58 5 6 4 1 0 94 0 1 425 0 1672 169 4 3 36 3 8 13 2 0 386 chain 25367 chr2 243199373 + 31858819 31859227 LTR17 781 + 4 326 102847 137 73 0 70 16 3 46 0 1 7 1 0 58 chain 3080 chr2 243199373 + 31885534 31885585 L1MC1 2226 + 2129 2181 223324 6 1 0 14 1 3 29 chain 74207 chr2 243199373 + 31888700 31889535 L1PA4 6152 + 5317 6152 46408 835 chain 487166 chr2 243199373 + 31903167 31909235 L1PA6 6164 - 4 6164 7474 8 3 0 141 0 1 177 0 1 508 5 9 835 9 17 93 0 2 36 1 0 103 0 56 476 0 1 38 0 9 264 3 7 126 9 13 49 0 1 4 1 2 149 0 3 692 33 12 113 0 2 209 0 1 412 0 3 208 0 5 270 6 7 30 2 1 177 0 1 66 0 17 31 0 1 204 1 0 83 0 1 36 8 0 19 37 36 204 0 1 189 chain 28273 chr2 243199373 + 31915467 31915765 AluYd8 298 - 0 298 92030 298 chain 3616 chr2 243199373 + 31919969 31920171 LTR19C 757 - 73 269 213410 5 1 0 4 1 0 8 1 0 20 6 0 10 99 101 18 11 12 18 chain 22411 chr2 243199373 + 31936209 31936468 L1PA5 6144 - 0 264 118433 148 0 7 13 2 0 96 chain 21666 chr2 243199373 + 31941454 31941721 AluY 311 + 25 290 121516 124 8 6 135 chain 37276 chr2 243199373 + 31958458 31958872 L1PA5 6144 + 5725 6139 73123 414 chain 4519 chr2 243199373 + 31959757 31959808 MER5A1 166 + 26 77 200571 51 chain 2660 chr2 243199373 + 31963769 31963855 MIRb 242 + 14 101 230899 24 43 44 19 chain 344699 chr2 243199373 + 31965231 31969122 L1PA5 6144 - 3 3903 11765 6 4 0 1266 0 1 232 0 5 949 0 1 1116 1 5 242 0 1 4 0 1 71 chain 426182 chr2 243199373 + 31973600 31978542 L1PA5 6144 + 0 6144 9393 1003 0 1 230 0 1 436 0 2 20 0 1200 19 0 1 60 0 1 253 18 15 519 0 1 1106 0 1 33 1 0 10 7 1 358 0 4 869 chain 73664 chr2 243199373 + 31981927 31982855 L1P3 4156 - 739 1667 46701 173 4 8 135 0 4 468 15 1 48 0 4 57 0 2 28 chain 20568 chr2 243199373 + 31986938 31987195 MSTA 426 + 169 426 125398 257 chain 40995 chr2 243199373 + 32000000 32000532 MLT2A2 560 + 16 560 67915 188 0 1 192 5 16 86 1 0 6 1 0 6 4 6 43 chain 69862 chr2 243199373 + 32008149 32009215 MER11A 1151 + 0 1151 48455 79 0 8 103 11 10 30 16 20 39 11 9 110 0 1 123 1 13 124 19 22 11 3 4 37 0 4 32 11 12 4 1 0 19 0 1 19 5 62 108 11 10 71 7 6 21 1 0 39 chain 119452 chr2 243199373 + 32014544 32016890 L1MA3 4352 + 2340 4215 31245 165 12 7 77 2 0 54 4 0 81 0 1 129 2 1 197 329 18 101 2 1 92 20 0 8 8 30 100 1 2 79 177 37 33 0 1 4 1 0 270 0 2 95 26 32 36 0 4 79 117 95 8 1 0 36 chain 529366 chr2 243199373 + 32020406 32026494 L1PA5 6144 + 4 6132 4263 865 0 1 533 6 7 551 0 9 59 0 1 413 10 11 578 5 6 566 1 0 40 11 19 16 2 0 1008 0 1 4 1 0 523 0 17 65 0 4 831 chain 112609 chr2 243199373 + 32028612 32029951 LTR12C 1709 + 7 1709 33500 292 0 16 126 7 70 101 0 1 37 0 278 184 1 0 4 4 2 106 0 4 244 0 4 233 chain 45386 chr2 243199373 + 32032195 32032709 L1PA5 6144 + 5612 6126 62609 514 chain 98799 chr2 243199373 + 32046161 32051960 L1MA2 4263 - 1932 4258 37071 38 2 13 6 0 1 61 6 10 232 2 1 51 522 0 431 1 0 63 3738 758 104 1 2 77 1 0 48 0 4 41 0 4 121 9 12 61 4 9 21 3 1 33 41 40 34 1 4 28 1 0 17 chain 6317 chr2 243199373 + 32046603 32046697 L1MA2 4263 - 2390 2485 182661 68 6 7 20 chain 93789 chr2 243199373 + 32049376 32050414 L1PA4 6152 - 9 1051 38411 841 0 4 197 chain 80766 chr2 243199373 + 32050414 32051314 L1PA4 6152 + 4192 5093 43123 355 0 1 545 chain 76429 chr2 243199373 + 32059451 32060372 L1PA7 6471 - 1 926 45242 662 1 0 108 0 2 78 1 4 71 chain 33768 chr2 243199373 + 32067066 32067441 L1PA3long 6157 - 0 374 77987 20 1 0 354 chain 28696 chr2 243199373 + 32067441 32067748 L1PA3long 6157 + 5474 5781 90347 307 chain 26781 chr2 243199373 + 32068457 32068814 L1PA7 6471 + 6110 6468 97042 113 1 4 86 9 10 130 4 1 14 chain 29276 chr2 243199373 + 32090880 32091188 AluYa5 310 - 2 310 87666 308 chain 27484 chr2 243199373 + 32120906 32121202 AluYf4 310 - 5 301 94700 296 chain 173030 chr2 243199373 + 32121978 32124094 L1PA7 6471 - 1684 3816 21704 109 0 4 260 8 13 570 0 2 165 8 9 152 1 0 399 0 4 222 12 13 210 chain 137927 chr2 243199373 + 32124094 32125762 L1PA7 6471 + 4799 6470 26426 72 9 10 431 0 1 229 1 2 77 0 3 618 13 12 179 0 1 27 3 0 9 chain 22083 chr2 243199373 + 32209602 32209896 AluY 311 + 6 300 119876 52 0 1 16 0 7 41 5 1 161 2 0 9 2 0 6 chain 6601 chr2 243199373 + 32211070 32211151 HY1 111 + 16 97 180437 81 chain 19544 chr2 243199373 + 32276258 32276506 AluSg4 309 + 28 274 128533 103 2 0 122 0 1 4 2 1 15 chain 22309 chr2 243199373 + 32284485 32284747 AluSc5 308 + 11 274 118880 115 0 1 147 chain 24814 chr2 243199373 + 32286079 32286363 AluSp 311 - 18 302 105810 284 chain 25095 chr2 243199373 + 32301940 32302241 AluSg4 309 - 7 308 104321 301 chain 21221 chr2 243199373 + 32310831 32311108 AluSc5 308 + 8 277 123138 10 5 1 45 4 1 192 1 0 20 chain 24265 chr2 243199373 + 32318089 32318402 AluYa5 310 + 1 304 108875 63 2 0 21 21 14 33 1 0 172 chain 516211 chr2 243199373 + 32325547 32331655 L1PA5 6144 - 16 6144 5557 121 0 7 9 8 1 696 1 0 229 14 2 320 0 1 4 1 0 387 0 4 166 0 2 500 0 4 1082 0 15 263 0 1 1145 9 0 410 28 29 5 1 0 284 14 13 244 27 30 19 1 15 120 chain 9982 chr2 243199373 + 32424510 32424704 L1MA3 4352 - 20 215 160665 4 1 0 14 1 0 26 8 6 24 2 0 16 5 1 16 16 27 61 chain 45014 chr2 243199373 + 32425415 32425908 SVA_D 2077 + 1555 2068 63041 368 0 20 125 chain 8414 chr2 243199373 + 32439525 32439624 U6 107 - 1 100 168760 99 chain 51266 chr2 243199373 + 32441880 32442908 L1P4 1494 - 101 971 58146 42 344 179 41 1 0 4 0 1 13 4 5 174 1 0 4 0 1 40 0 5 191 8 9 161 chain 11468 chr2 243199373 + 32472907 32473045 L1PB4 2604 + 2410 2548 154438 138 chain 17410 chr2 243199373 + 32474338 32474621 MER49 923 + 619 899 134477 144 6 5 13 0 3 23 29 31 44 8 1 16 chain 26556 chr2 243199373 + 32477805 32478097 AluYk4 311 + 0 292 97822 292 chain 3300 chr2 243199373 + 32486324 32486375 LTR9 672 + 528 570 218970 17 9 0 25 chain 6465 chr2 243199373 + 32497480 32497573 MLT1A0 366 + 271 366 181519 32 9 11 52 chain 79124 chr2 243199373 + 32500650 32501618 LTR5_Hs 974 - 0 974 43986 103 7 5 32 8 15 533 0 1 285 chain 159195 chr2 243199373 + 32518157 32520112 SVA_D 2077 - 13 2002 23440 90 16 0 537 0 102 154 0 1 8 11 37 4 0 1 45 1 0 41 8 10 31 1 0 8 42 14 23 25 14 27 2 1 40 40 0 801 chain 1604 chr2 243199373 + 32519112 32519154 SVA_D 2077 - 778 820 82383 42 chain 20404 chr2 243199373 + 32521303 32521563 AluSg7 307 + 46 302 125882 17 4 1 67 0 1 162 2 0 8 chain 23261 chr2 243199373 + 32544085 32544387 AluSp 311 + 11 308 114379 41 7 6 244 4 0 6 chain 3147 chr2 243199373 + 32546870 32546903 LTR32 486 + 32 65 221994 33 chain 25546 chr2 243199373 + 32556856 32557165 AluSg7 307 + 0 307 102016 64 3 1 242 chain 4362 chr2 243199373 + 32558593 32558751 L1MC4a 1092 - 0 136 202420 29 89 67 40 chain 162389 chr2 243199373 + 32671820 32673708 SVA_E 1901 - 0 1901 23014 668 36 66 244 54 0 73 9 8 25 2 1 117 0 40 515 1 0 144 chain 24024 chr2 243199373 + 32719299 32719581 AluSc5 308 - 15 297 110195 282 chain 11889 chr2 243199373 + 32753602 32753831 Tigger4 2445 + 2121 2360 152655 58 0 1 5 1 0 13 0 2 15 1 0 20 1 0 22 30 28 14 10 22 39 chain 163929 chr2 243199373 + 32760388 32762258 L1PA4 6152 - 11 1933 22816 7 0 6 117 2 0 6 0 2 45 1 0 66 1 0 971 0 1 273 0 45 314 0 2 67 chain 23954 chr2 243199373 + 32762258 32762529 L1P1 4361 + 2537 2831 110102 105 0 23 166 chain 13437 chr2 243199373 + 32870623 32870774 L1PA4 6152 - 6 157 146550 151 chain 2942 chr2 243199373 + 32877059 32877092 MER2B 336 - 1 34 226279 33 chain 313242 chr2 243199373 + 32884606 32888692 L1PA7 6471 - 2 6471 12881 139 17 38 643 263 7 19 1 4 639 0 1 29 1 0 303 1 3 447 1 2 193 1 0 497 5 1 7 4 0 206 0 1 7 0 2607 93 0 2 175 0 3 115 0 3 111 8 12 146 0 1 15 chain 22863 chr2 243199373 + 32885408 32885668 L1PA7 6471 + 6054 6329 116268 238 1 16 21 chain 21001 chr2 243199373 + 32890694 32890957 AluSc5 308 + 15 280 123913 93 5 7 165 chain 19473 chr2 243199373 + 32901589 32901830 AluSg7 307 - 40 282 128741 140 0 1 101 chain 21299 chr2 243199373 + 32909239 32909467 L1PA2 6032 - 249 477 122868 228 chain 4736 chr2 243199373 + 32918384 32918513 MER5A 189 + 18 146 198097 49 63 62 17 chain 69336 chr2 243199373 + 32939529 32940585 L1PA15 4387 - 94 1150 48666 17 12 9 50 1 0 10 6 2 19 2 1 55 1 0 25 2 1 42 45 47 18 0 3 62 1 0 19 1 0 25 2 0 65 7 10 46 0 3 55 0 4 326 0 1 61 1 0 80 chain 122912 chr2 243199373 + 32950232 32951814 THE1B-int 1605 - 0 1605 30074 17 1 2 622 7 8 116 3 4 17 8 1 189 6 8 166 0 25 430 chain 124822 chr2 243199373 + 32979212 32980708 SVA_D 2077 - 0 2065 29444 627 0 1 6 1 0 38 0 402 17 1 0 32 0 35 11 3 0 148 17 93 5 2 0 9 0 2 17 0 40 59 0 39 431 25 0 34 1 7 12 chain 29179 chr2 243199373 + 32992510 32992827 AluYb8 318 - 3 318 88154 57 2 0 258 chain 19130 chr2 243199373 + 33031607 33031860 AluSc8 310 + 42 299 129745 85 1 2 79 2 3 46 9 11 31 chain 3007 chr2 243199373 + 33034537 33034570 MER5A1 166 + 42 75 224913 33 chain 3734 chr2 243199373 + 33053089 33053134 MER20 218 - 31 76 211403 45 chain 25794 chr2 243199373 + 33069333 33069681 THE1B 368 + 8 368 100899 36 0 15 110 1 0 31 6 4 164 chain 119285 chr2 243199373 + 33069681 33071348 THE1B-int 1605 + 0 1600 31299 56 3 2 134 0 1 148 0 13 8 131 0 68 0 25 72 1 0 78 0 1 98 5 6 98 0 2 231 3 21 429 0 5 104 chain 26183 chr2 243199373 + 33071353 33071709 THE1B 368 + 0 368 99268 43 1 16 110 1 0 11 0 1 4 2 1 12 2 0 170 chain 29175 chr2 243199373 + 33072305 33072675 MLT2A1 477 - 98 477 88182 45 1 5 157 0 4 25 0 1 142 chain 3912 chr2 243199373 + 33083582 33083627 Charlie1a 1436 + 98 143 208678 45 chain 35244 chr2 243199373 + 33083764 33084244 LTR12 884 - 15 884 75867 49 0 236 188 0 22 9 0 157 126 25 0 57 1 0 25 chain 56241 chr2 243199373 + 33093197 33093860 SVA_D 2077 + 378 1487 55001 510 2 398 28 0 1 25 2 0 35 0 49 20 0 1 37 0 1 4 chain 92418 chr2 243199373 + 33093887 33095619 SVA_F 1814 + 620 1814 38839 12 0 40 57 56 46 15 38 1 25 1 0 12 76 19 8 1 0 43 486 0 49 0 15 39 1 0 10 1 0 116 0 1 686 chain 4424 chr2 243199373 + 33093956 33094012 SVA_F 1814 + 962 1018 85813 56 chain 3002 chr2 243199373 + 33094027 33094065 SVA_F 1814 + 1033 1071 85813 38 chain 3397 chr2 243199373 + 33094103 33094179 SVA_F 1814 + 868 945 71459 19 0 1 57 chain 2521 chr2 243199373 + 33094232 33094258 SVA_F 1814 + 1011 1037 162093 26 chain 5846 chr2 243199373 + 33094258 33094332 SVA_F 1814 + 1213 1286 85813 61 1 0 12 chain 24324 chr2 243199373 + 33094354 33094634 SVA_F 1814 + 893 1183 108523 39 1 0 15 1 15 39 1 0 10 1 0 166 1 0 6 chain 3487 chr2 243199373 + 33094639 33094717 SVA_F 1814 + 1011 1089 71459 78 chain 32837 chr2 243199373 + 33099516 33099994 MER75 514 - 5 503 79481 11 1 0 113 1 0 38 3 21 126 0 3 30 10 11 45 24 24 76 chain 65374 chr2 243199373 + 33104770 33105515 L1PA5 6144 + 5392 6139 50389 140 0 1 456 0 1 149 chain 11511 chr2 243199373 + 33111414 33111551 LTR12C 1709 - 641 778 154248 137 chain 2938 chr2 243199373 + 33132932 33132969 L1MB5 1630 - 257 295 226361 12 0 1 25 chain 26290 chr2 243199373 + 33140082 33140384 AluY 311 + 6 308 98860 302 chain 23685 chr2 243199373 + 33147126 33147468 THE1B 368 - 0 368 112122 125 18 30 8 0 1 4 1 0 19 10 9 113 0 15 44 chain 10153 chr2 243199373 + 33149001 33149123 AluSp 311 + 10 132 159832 122 chain 5223 chr2 243199373 + 33164134 33164206 MADE1 96 - 2 96 192802 28 2 24 42 chain 25203 chr2 243199373 + 33169336 33169695 THE1C 375 + 0 375 103728 49 0 11 81 1 5 34 0 1 6 1 0 5 1 0 45 1 0 104 5 8 26 chain 21421 chr2 243199373 + 33189857 33190131 AluSc 308 + 30 304 122438 56 0 1 185 8 7 25 chain 115038 chr2 243199373 + 33207024 33208589 THE1B-int 1605 + 0 1605 32778 113 0 3 153 11 12 116 9 73 109 40 4 76 3 12 81 0 1 16 1 0 7 1 2 485 0 2 23 15 12 31 5 4 270 chain 333651 chr2 243199373 + 33269195 33273093 L1PA7 6471 - 1 3913 12063 48 1 0 6 7 20 383 0 2 314 0 2 72 4 0 56 0 1 364 0 1 376 1 0 318 0 1 503 1 3 284 0 2 36 7 5 223 1 0 248 1 0 377 0 1 192 1 0 74 chain 237733 chr2 243199373 + 33278607 33281372 HERV9-int 5642 - 1745 4513 16895 40 1 8 69 1 0 299 3 0 125 0 1 473 0 1 393 0 1 455 2 1 698 3 0 165 0 1 38 chain 108288 chr2 243199373 + 33281591 33283058 LTR12C 1709 - 0 1709 34619 82 1 0 65 0 3 30 1 103 198 35 4 41 0 207 139 1 0 45 3 6 52 41 0 50 0 1 217 1 0 205 0 1 260 chain 2508 chr2 243199373 + 33282284 33282325 LTR12C 1709 - 816 857 141180 41 chain 13806 chr2 243199373 + 33292566 33292815 MER2 342 + 14 270 145242 22 43 48 25 2 0 5 2 6 150 chain 9928 chr2 243199373 + 33330287 33330488 Tigger1 2417 - 64 233 160937 102 1 0 10 60 29 28 chain 19169 chr2 243199373 + 33376555 33377045 L1PB1 5432 - 12 427 129619 16 1 0 7 7 6 11 0 1 9 1 0 24 2 0 5 17 14 17 9 0 13 11 8 8 1 0 44 1 0 16 2 1 50 17 14 10 0 3 5 5 0 26 57 9 50 18 18 30 chain 49224 chr2 243199373 + 33377045 33377678 L1PB1 5432 + 4377 5009 59573 232 14 12 84 0 2 295 1 0 7 chain 560593 chr2 243199373 + 33395088 33401232 L1PA3long 6157 + 6 6157 324 520 4 0 560 0 3 356 0 1 761 0 4 3099 0 4 510 1 0 333 chain 115950 chr2 243199373 + 33423199 33424470 L1PA3long 6157 - 2235 3506 32338 1271 chain 202373 chr2 243199373 + 33424470 33426705 L1PA3long 6157 + 3923 6157 19030 1975 1 0 259 chain 18703 chr2 243199373 + 33450754 33451105 L1MA5A 2387 - 124 438 130936 31 28 0 12 1 0 5 3 0 34 2 1 20 5 3 50 4 3 12 4 5 18 2 0 5 0 1 30 1 0 84 chain 141265 chr2 243199373 + 33459471 33461128 L1PA7 6471 + 4641 6465 25941 313 0 1 124 3 175 367 2 0 77 0 2 120 3 0 632 0 1 5 4 0 7 chain 25464 chr2 243199373 + 33476443 33476754 AluY 311 + 0 305 102379 9 2 0 120 4 0 176 chain 22263 chr2 243199373 + 33479674 33479925 L1PA4 6152 - 9 260 119058 251 chain 33562 chr2 243199373 + 33479997 33480355 L1PA2 6032 - 4 362 78301 358 chain 30747 chr2 243199373 + 33480355 33480686 L1PA2 6032 + 5325 5656 82959 331 chain 35980 chr2 243199373 + 33511739 33512141 L1PA4 6152 + 5733 6134 74918 85 1 0 316 chain 22005 chr2 243199373 + 33528292 33528943 MER1B 344 - 5 344 120207 20 1 0 32 14 21 46 319 0 132 6 7 81 chain 6904 chr2 243199373 + 33549287 33549444 MER44A 345 + 111 232 178158 52 61 24 5 0 1 39 chain 25044 chr2 243199373 + 33564718 33565010 AluSp 311 - 18 310 104573 292 chain 29334 chr2 243199373 + 33581069 33581459 LOR1b 457 - 0 389 87382 10 0 1 245 1 2 54 2 0 52 1 0 25 chain 7271 chr2 243199373 + 33593299 33593407 L1P5 443 + 206 321 175642 71 5 13 9 1 0 22 chain 134814 chr2 243199373 + 33618372 33619918 L1PA5 6144 - 12 1546 27053 838 2 0 55 1 0 274 3 2 58 8 0 307 chain 2524 chr2 243199373 + 33689490 33689541 Tigger1 2417 + 187 231 232883 13 13 6 25 chain 7902 chr2 243199373 + 33762278 33762371 7SLRNA 320 + 210 303 171643 93 chain 2970 chr2 243199373 + 33763182 33763284 MERX 374 + 197 310 225666 14 3 13 17 43 44 25 chain 24968 chr2 243199373 + 33764786 33765082 AluYc 301 + 0 299 104968 39 0 1 80 0 2 177 chain 28879 chr2 243199373 + 33773146 33773453 AluYk11 308 + 0 307 89549 307 chain 30285 chr2 243199373 + 33781298 33781613 AluYb8 318 - 3 318 83978 315 chain 21987 chr2 243199373 + 33791097 33791389 AluY 311 + 10 303 120281 103 5 6 14 2 0 145 0 2 23 chain 18947 chr2 243199373 + 33819344 33819589 L1PA8A 6298 + 6045 6291 130235 42 1 2 202 chain 41429 chr2 243199373 + 33834946 33835436 MER9a2 513 + 0 513 67381 24 0 23 466 chain 66197 chr2 243199373 + 33837367 33839736 HUERS-P1-int 2401 + 215 2139 50004 17 17 11 34 4 0 7 68 47 15 40 12 14 1 0 13 1 0 42 22 18 16 7 1 11 1 0 8 2 0 14 40 19 16 1 0 5 0 1 4 30 17 15 27 24 87 62 40 29 2 0 79 0 1 5 2 0 121 0 4 46 1 0 7 13 10 90 10 8 10 27 30 55 1 2 19 2 0 21 23 15 50 1 0 24 20 0 23 99 44 11 0 4 13 2 0 9 281 260 4 1 0 7 3 0 9 5 4 18 7 6 14 249 123 17 29 0 7 1 0 17 1 0 35 1 0 11 57 28 26 1 0 5 1 0 6 35 26 48 2 0 15 chain 8509 chr2 243199373 + 33856397 33856518 L1MB3 1562 - 10 129 168250 28 1 0 56 1 0 35 chain 3836 chr2 243199373 + 33858355 33858399 MER57A1 433 - 65 109 209840 44 chain 12516 chr2 243199373 + 33859597 33859893 MLT1A1 405 - 0 332 150177 73 1 0 67 129 166 26 chain 6098 chr2 243199373 + 33872910 33872981 LTR8A 794 + 351 422 184428 71 chain 35746 chr2 243199373 + 33881515 33881917 L1PA3long 6157 + 5744 6149 75205 203 0 3 199 chain 37440 chr2 243199373 + 33882488 33882961 LTR17 781 + 255 757 72907 72 1 0 157 0 1 4 1 0 131 0 4 9 0 1 31 0 2 46 1 24 20 chain 330649 chr2 243199373 + 33884724 33888901 HERV17-int 4347 + 13 4347 12177 14 1 0 51 1 0 33 3 1 26 2 1 188 0 430 194 0 28 270 4 13 24 0 2 181 0 2 466 0 5 353 6 0 435 311 0 416 0 1 1089 1 3 108 chain 24833 chr2 243199373 + 33889213 33889522 LTR17 781 + 0 326 105708 203 3 4 42 1 17 60 chain 25188 chr2 243199373 + 33902600 33902987 Tigger3b 1229 + 782 1181 103810 74 8 12 66 38 41 162 0 5 39 chain 26474 chr2 243199373 + 33917044 33917392 THE1A 353 - 0 353 98154 53 0 6 184 3 2 108 chain 124750 chr2 243199373 + 33917394 33918987 THE1A-int 1579 - 2 1579 29464 249 33 0 78 0 3 6 0 1 126 0 6 627 11 14 357 0 3 73 0 1 33 chain 26907 chr2 243199373 + 33918987 33919340 THE1A 353 - 0 352 96601 243 11 10 99 chain 36357 chr2 243199373 + 33919353 33919801 L1PREC2 3366 - 1505 1953 74423 211 0 3 40 0 1 7 4 0 186 chain 21143 chr2 243199373 + 33935655 33935919 AluSp 311 + 0 295 123397 38 1 32 54 0 1 7 1 0 163 chain 54067 chr2 243199373 + 33938623 33939817 MER4E 760 - 14 760 56310 168 446 0 44 13 1 80 1 5 16 1 0 46 15 17 25 20 27 153 1 0 39 2 0 101 0 1 23 chain 31304 chr2 243199373 + 33938837 33939231 L1PA7 6471 + 6077 6470 81986 208 1 2 20 2 0 6 0 1 144 1 0 12 chain 34324 chr2 243199373 + 33953790 33954292 MER41A 554 + 21 479 77174 66 0 1 4 0 1 130 3 5 181 0 4 37 53 1 28 chain 8751 chr2 243199373 + 33954907 33955014 MER41A 554 + 171 280 166918 54 0 2 53 chain 29490 chr2 243199373 + 33957151 33957459 AluYa5 310 - 2 310 86670 308 chain 171571 chr2 243199373 + 33963492 33967901 L1PB1 5432 - 9 4131 21874 5 0 1 5 1 0 8 1 0 11 2 1 17 9 0 8 15 21 14 9 6 15 27 15 16 1 0 4 24 13 23 22 20 36 47 68 11 1 2 167 8 9 299 4 0 82 1 0 11 0 2 11 7 11 100 0 1 586 1 0 6 0 5 17 0 17 42 1806 1488 101 0 1 220 2 1 51 0 1 170 1 0 260 45 63 43 5 18 7 12 0 12 chain 103014 chr2 243199373 + 33971898 33973811 L1PA7 6471 + 5134 6429 35985 162 1 2 5 322 0 141 0 1 169 0 3 76 1 0 7 4 5 98 299 2 123 6 0 133 1 2 73 0 1 173 1 0 65 0 1 53 chain 117960 chr2 243199373 + 33985930 33987263 SVA_C 1631 - 0 1611 31819 516 0 256 102 0 1 583 4 0 109 1 26 18 chain 3656 chr2 243199373 + 34001208 34001487 LTR12C 1709 + 896 1647 212657 21 0 37 28 208 643 22 chain 11036 chr2 243199373 + 34022620 34022859 LTR12 884 + 162 378 156064 27 41 0 86 49 67 36 chain 14614 chr2 243199373 + 34035836 34036002 L1PA4 6152 + 5977 6143 142537 166 chain 26469 chr2 243199373 + 34044585 34044887 AluY 311 + 7 311 98169 82 0 1 36 0 1 184 chain 149561 chr2 243199373 + 34050766 34052415 L1PA4 6152 - 0 1659 24680 58 0 10 1591 chain 25871 chr2 243199373 + 34067823 34068160 THE1C 375 + 0 336 100565 186 10 9 141 chain 20734 chr2 243199373 + 34081197 34081582 THE1B 368 + 0 368 124837 15 2 0 32 0 1 48 47 39 22 0 1 11 31 24 21 14 13 66 1 0 75 chain 14788 chr2 243199373 + 34081945 34082679 LTR26B 539 - 300 539 141974 51 468 17 21 45 0 132 2 3 15 chain 9408 chr2 243199373 + 34088737 34088880 LTR12D 1347 - 570 881 163517 66 20 188 57 chain 3711 chr2 243199373 + 34088917 34088967 LTR12D 1347 - 689 739 211787 50 chain 3209 chr2 243199373 + 34116011 34116052 LTR12F 595 + 185 235 220756 21 0 9 20 chain 30802 chr2 243199373 + 34119675 34120365 MER41A 554 + 0 388 82858 108 0 2 55 305 0 153 0 1 69 chain 5572 chr2 243199373 + 34122205 34122351 L1MA8 2339 + 2066 2186 189349 20 62 36 64 chain 40483 chr2 243199373 + 34139103 34139617 MER9a3 513 - 0 513 68618 11 5 11 29 8 6 436 5 1 7 1 0 12 chain 246937 chr2 243199373 + 34139617 34142749 HERVK9-int 4720 - 0 4684 16397 1080 1 2 21 2 1 276 51 689 231 0 924 61 0 2 562 0 1 4 1 0 311 15 14 292 13 9 80 2 1 27 1 0 7 2 1 66 13 9 13 chain 44552 chr2 243199373 + 34144079 34144590 MER9a3 513 - 0 511 63523 511 chain 29310 chr2 243199373 + 34152175 34152484 AluYa5 310 - 1 310 87513 309 chain 26911 chr2 243199373 + 34161407 34161789 THE1C 375 + 0 375 96594 106 1 3 64 13 7 5 2 0 165 1 0 25 chain 24704 chr2 243199373 + 34182373 34182664 AluY 311 + 5 297 106407 127 0 1 164 chain 84388 chr2 243199373 + 34201296 34202342 MER11C 1089 + 0 1074 41757 55 0 3 139 0 1 44 0 1 24 0 3 49 1 18 249 12 13 327 1 3 145 chain 82157 chr2 243199373 + 34213688 34214725 L1PA6 6164 + 5090 6156 42702 101 2 1 104 0 4 12 8 21 59 6 5 209 0 2 99 0 4 291 1 9 145 chain 26662 chr2 243199373 + 34256910 34257211 L1PA5 6144 + 5837 6138 97446 301 chain 2784 chr2 243199373 + 34261405 34261475 LTR78 714 - 473 533 228942 22 28 18 20 chain 26374 chr2 243199373 + 34271144 34271444 AluSg7 307 - 6 307 98521 169 0 1 131 chain 3808 chr2 243199373 + 34272399 34272444 MER5A1 166 - 43 88 210269 45 chain 10124 chr2 243199373 + 34284197 34284322 MER85 139 + 4 139 159974 85 0 10 40 chain 51585 chr2 243199373 + 34287843 34288534 MER4E1 777 - 61 760 57900 165 25 12 110 0 1 61 0 1 14 0 19 91 0 1 57 8 7 160 chain 4335 chr2 243199373 + 34295895 34295948 MER1B 344 + 291 344 202774 53 chain 23601 chr2 243199373 + 34298124 34298407 AluY 311 + 10 296 112578 102 1 0 4 0 3 7 0 1 169 chain 49355 chr2 243199373 + 34307714 34308281 L1PA5 6144 - 3 608 59485 247 0 36 222 0 2 98 chain 24466 chr2 243199373 + 34310505 34310786 L1PA5 6144 + 5848 6132 107730 115 0 3 166 chain 38286 chr2 243199373 + 34319998 34320444 L1PA5 6144 - 3 452 71731 144 0 1 24 1 3 277 chain 24341 chr2 243199373 + 34334039 34334334 AluY 311 + 0 311 108410 123 1 0 9 0 1 5 0 16 157 chain 53245 chr2 243199373 + 34338930 34339543 L1PA5 6144 - 17 621 56861 97 9 0 507 chain 61955 chr2 243199373 + 34352874 34353570 L1PA4 6152 - 18 714 51918 696 chain 121789 chr2 243199373 + 34357577 34358989 SVA_C 1631 - 0 1586 30447 17 4 0 588 0 137 38 2 0 106 0 37 483 0 1 117 0 3 40 5 7 12 chain 2857 chr2 243199373 + 34367206 34367237 LTR12C 1709 - 991 1022 209300 31 chain 5807 chr2 243199373 + 34367237 34367307 LTR12C 1709 - 981 1051 187077 70 chain 9910 chr2 243199373 + 34367335 34367511 LTR12C 1709 - 641 935 161020 90 42 160 44 chain 4204 chr2 243199373 + 34372494 34372576 MER52D 1964 - 701 799 204492 41 26 42 15 chain 22457 chr2 243199373 + 34375651 34375917 AluY 311 + 37 303 118212 106 3 0 7 0 3 150 chain 46132 chr2 243199373 + 34375924 34376551 L1PA8 5853 + 5229 5847 61912 335 1 0 36 24 22 56 18 15 47 2 1 19 2 0 87 chain 47964 chr2 243199373 + 34409150 34409709 L1PA7 6471 + 5887 6451 60515 183 0 3 367 0 2 9 chain 26117 chr2 243199373 + 34424070 34424432 THE1B 368 + 0 368 99541 169 1 0 28 1 0 4 34 42 125 chain 5683 chr2 243199373 + 34428507 34428600 LTR33A_ 513 + 367 474 188272 15 12 26 66 chain 23790 chr2 243199373 + 34429018 34429483 L1PA15 4387 - 60 510 111532 11 4 2 38 12 9 50 1 0 9 4 0 23 2 1 51 7 6 17 11 10 49 0 2 15 26 27 6 1 0 66 5 4 24 1 0 17 3 1 12 chain 15510 chr2 243199373 + 34442842 34443021 L1PA7 6471 + 6280 6459 139854 179 chain 48240 chr2 243199373 + 34446284 34446866 L1PA7 6471 + 5887 6467 60282 409 19 21 5 1 0 132 3 0 13 chain 22791 chr2 243199373 + 34461449 34461786 THE1A 353 + 0 330 116628 47 0 1 46 1 0 17 0 2 6 8 6 126 3 4 16 11 3 56 chain 125422 chr2 243199373 + 34461808 34463369 THE1A-int 1579 + 0 1566 29272 650 0 1 4 8 10 21 2 0 280 2 1 471 0 5 123 chain 7208 chr2 243199373 + 34485630 34485775 MER1B 344 - 15 155 176012 36 1 0 5 34 35 36 5 0 28 chain 153737 chr2 243199373 + 34487651 34489723 L1PBa1 4058 + 1710 4002 24118 14 0 234 103 7 10 142 0 4 250 10 5 183 0 5 60 0 3 303 1 3 239 19 19 148 1 0 117 1 0 114 1 0 29 7 6 137 0 3 6 9 4 22 14 5 17 2 0 19 2 1 4 1 0 4 3 0 18 15 13 7 0 2 9 2 0 10 1 0 16 1 0 4 chain 21795 chr2 243199373 + 34504837 34505184 THE1B 368 - 12 368 121033 90 58 68 21 1 0 177 chain 76927 chr2 243199373 + 34524874 34525795 L1PA6 6164 + 5218 6162 45008 96 1 5 514 0 1 248 0 18 62 chain 10562 chr2 243199373 + 34526405 34526546 Tigger3b 1229 - 761 899 157987 131 3 0 7 chain 55505 chr2 243199373 + 34533854 34534474 L1PA3long 6157 - 758 1378 55149 15 0 1 500 2 1 103 chain 67018 chr2 243199373 + 34534474 34535214 L1PA3long 6157 + 5401 6157 49650 622 0 14 113 0 2 5 chain 18844 chr2 243199373 + 34547368 34547595 L1PA7 6471 + 6229 6456 130531 85 3 0 5 0 3 134 chain 9795 chr2 243199373 + 34588629 34588751 LTR24B 570 + 0 125 161619 88 0 3 34 chain 5428 chr2 243199373 + 34628740 34628815 MADE1 96 + 0 91 190724 32 5 21 38 chain 3376 chr2 243199373 + 34629779 34629821 MADE1 96 + 8 49 217554 37 1 0 4 chain 28207 chr2 243199373 + 34637462 34637760 AluYd8 298 - 0 297 92283 184 1 0 113 chain 59421 chr2 243199373 + 34657202 34657953 LTR12 884 + 0 884 53157 14 6 7 53 0 132 172 2 0 65 6 5 261 1 0 131 1 5 39 chain 31288 chr2 243199373 + 34659080 34659468 MLT2A1 477 - 92 477 82010 210 9 6 169 chain 21036 chr2 243199373 + 34678260 34678530 THE1B-int 1605 - 1335 1605 123786 67 0 1 4 1 0 198 chain 10057 chr2 243199373 + 34685150 34685276 THE1D 372 + 244 370 160295 126 chain 522837 chr2 243199373 + 34691287 34697703 L1PA7 6471 + 0 6449 4883 15 0 1 215 24 32 137 0 4 152 6 1 265 0 2 322 0 2 52 4 5 4 1 0 93 0 3 126 0 2 5 14 12 111 1 0 573 0 2 39 0 1 464 0 1 365 5 6 538 0 4 58 1 0 212 6 5 180 2 1 407 8 9 29 0 1 4 1 0 205 0 8 121 0 1 725 2 3 106 1 3 70 0 1 618 1 0 128 chain 21636 chr2 243199373 + 34698081 34698334 AluSg7 307 - 43 297 121634 132 0 1 121 chain 17339 chr2 243199373 + 34717170 34717362 L1PA3long 6157 + 5961 6153 134686 192 chain 116421 chr2 243199373 + 34719176 34720569 LTR12C 1709 + 0 1709 32304 102 7 6 201 0 1 4 1 0 478 1 319 6 2 0 107 0 4 148 3 0 333 chain 435672 chr2 243199373 + 34730564 34736460 L1PA5 6144 + 909 6137 9177 45 25 0 180 2 1 9 34 25 542 1 2 318 0 1 402 0 1 368 8 9 341 0 5 15 638 0 50 21 14 2057 1 0 14 0 1 496 0 1 178 0 2 151 chain 53003 chr2 243199373 + 34732863 34733490 L1PA5 6144 + 5517 6144 57014 465 7 6 6 0 1 149 chain 36258 chr2 243199373 + 34746687 34747106 L1PA6 6164 + 5737 6156 74551 419 chain 145819 chr2 243199373 + 34766092 34768107 L1PA8 5853 - 0 2047 25204 92 10 9 11 2 1 30 43 40 62 8 1 33 3 0 8 0 10 9 11 29 285 8 16 38 23 25 140 0 11 294 1 2 84 0 1 54 4 5 158 5 1 70 18 17 511 chain 240518 chr2 243199373 + 34778718 34781473 L1PA4 6152 - 9 2766 16737 691 1 0 151 5 0 337 0 1 605 1 5 88 0 3 876 chain 422619 chr2 243199373 + 34781473 34786523 L1PA3long 6157 - 0 6157 9470 155 1 0 544 1 0 765 0 1 51 1 0 141 0 1095 99 2 1 116 1 0 760 0 3 1261 0 3 116 0 1 242 0 1 66 1 0 17 5 12 132 0 1 473 3 4 97 chain 280719 chr2 243199373 + 34797624 34800615 L1HS 6032 - 977 3968 14602 2991 chain 90339 chr2 243199373 + 34800615 34801578 L1HS 6032 + 5069 6032 39418 963 chain 35487 chr2 243199373 + 34819393 34819784 L1PA2 6032 - 487 881 75574 295 1 0 70 0 4 25 chain 45829 chr2 243199373 + 34819788 34820282 L1PA2 6032 + 5537 6031 62198 494 chain 18920 chr2 243199373 + 34836919 34837196 L1PB 1623 + 319 591 130315 77 1 0 14 6 0 47 9 12 18 1 0 104 chain 534386 chr2 243199373 + 34860378 34866543 L1PA4 6152 + 0 6151 3666 207 1 5 161 13 14 189 1 0 251 23 6 159 2 0 762 0 1 283 1 2 654 0 3 2111 3 0 36 1 0 1307 chain 5609 chr2 243199373 + 34878398 34878459 L1P1 4361 - 1264 1325 188985 61 chain 234017 chr2 243199373 + 34878459 34881166 L1PA5 6144 + 3410 6143 17087 272 1 0 476 1 0 186 1 5 807 1 4 137 0 4 509 0 1 6 0 15 183 0 1 127 chain 11921 chr2 243199373 + 34884997 34885209 MER1B 344 - 0 207 152510 58 22 21 44 26 22 62 chain 9774 chr2 243199373 + 34907306 34907412 L1PA2 6032 + 5926 6032 161723 106 chain 21292 chr2 243199373 + 34919624 34919953 LTR7 482 + 24 476 122890 45 6 95 60 8 40 42 1 2 111 13 14 43 chain 228001 chr2 243199373 + 34920048 34927456 HERVH-int 3825 + 490 3825 17417 30 3 210 48 0 1 551 8 22 29 0 1 49 9 0 24 0 2 13 1 0 102 5 0 209 3 0 222 5 9 74 4 9 256 0 1 246 4497 0 158 3 0 362 2 212 495 chain 157041 chr2 243199373 + 34923866 34926021 HERVH-int 3825 - 0 3825 23716 376 23 23 88 147 362 44 0 13 1001 3 1445 104 4 5 20 30 29 315 chain 16179 chr2 243199373 + 34927640 34927888 LTR7 482 + 187 470 137820 37 0 1 28 11 43 10 1 2 111 13 14 37 chain 310085 chr2 243199373 + 34939879 34944375 L1PB1 5432 - 29 5321 13002 12 1 0 21 1 0 24 2 0 14 8 5 16 22 11 4 1 0 16 1 0 43 7 6 10 2 1 53 2 0 9 16 11 13 1 0 20 1 0 8 7 12 118 6 5 56 6 8 99 1 0 124 0 805 140 17 6 45 0 5 148 0 3 210 1 0 364 12 22 93 2 3 348 1 0 61 1 2 248 0 1 332 0 4 223 2 0 5 0 2 8 0 5 133 0 1 18 55 42 5 2 0 7 1 0 369 48 45 219 1 0 67 0 9 53 6 6 16 1 0 8 71 80 121 0 1 123 1 2 165 chain 57528 chr2 243199373 + 34957489 34958255 LTR17 781 - 0 781 54220 12 0 1 18 0 22 336 1 0 65 10 1 22 10 0 23 0 2 138 1 2 9 0 9 121 chain 28062 chr2 243199373 + 34961839 34962228 LTR7B 505 + 0 505 92783 108 0 10 53 18 86 54 0 41 89 14 13 26 2 0 25 chain 3409 chr2 243199373 + 34963946 34963986 LTR41 747 - 623 663 216939 40 chain 115304 chr2 243199373 + 34974370 34975663 L1PA4 6152 + 4857 6150 32679 374 10 10 282 0 1 622 1 0 4 chain 6664 chr2 243199373 + 34984831 34984904 AluYb8 318 + 7 80 179962 73 chain 34043 chr2 243199373 + 34989507 34989924 L1PA8 5853 - 889 1306 77230 417 chain 65195 chr2 243199373 + 34989924 34990807 L1PA8 5853 + 4966 5847 50474 43 0 2 498 0 1 54 1 0 41 2 0 74 1 0 6 21 20 33 22 22 87 chain 37861 chr2 243199373 + 34993214 34993647 L1PA6 6164 + 5729 6162 72327 433 chain 25768 chr2 243199373 + 35005536 35005876 THE1A 353 - 12 351 101016 99 8 9 7 1 0 116 2 1 107 chain 273931 chr2 243199373 + 35015296 35018806 HERVH-int 3825 + 0 3825 14976 318 27 26 20 15 16 91 0 4 7 5 3 50 1 0 35 2 1 9 1 0 24 25 114 61 1 0 123 0 1 326 15 0 57 0 1 4 1 0 139 9 0 40 1 0 207 12 39 290 0 4 124 0 3 293 12 11 677 2 212 234 1 2 156 0 8 95 chain 28527 chr2 243199373 + 35026070 35026474 LTR7 482 - 5 482 91062 44 6 8 41 0 2 85 0 31 17 1 0 26 1 2 106 8 46 69 chain 258089 chr2 243199373 + 35027729 35031377 HERVH-int 3825 - 0 3825 15804 225 0 2 94 4 6 80 0 1 4 1 0 30 52 263 25 0 3 795 3 1 197 8 13 164 15 123 19 0 1 309 1 0 10 0 2 27 9 0 519 24 24 93 3 8 7 2 0 10 1 5 41 4 5 17 42 0 45 43 0 19 32 8 12 1 14 15 0 1 8 60 0 10 1 0 37 2 1 47 2 0 10 0 4 91 15 16 20 27 26 35 0 2 281 chain 3111 chr2 243199373 + 35030612 35030648 HERVH-int 3825 - 3129 3165 222741 36 chain 22361 chr2 243199373 + 35034448 35034683 AluYa5 310 - 0 235 118667 235 chain 54552 chr2 243199373 + 35044606 35045187 L1HS 6032 + 5450 6031 55993 581 chain 3628 chr2 243199373 + 35045346 35045390 THE1D 372 - 326 372 213194 31 0 2 13 chain 12575 chr2 243199373 + 35063476 35063641 L1MA4 2864 + 1811 1982 149935 63 1 7 101 chain 28431 chr2 243199373 + 35070449 35070822 L1PBa 3878 - 1037 1413 91459 133 1 0 4 0 4 235 chain 16124 chr2 243199373 + 35128240 35128457 L1PA8 5853 + 5637 5850 137982 41 2 1 9 1 0 52 2 1 19 1 0 90 chain 7338 chr2 243199373 + 35141660 35141763 L1PA14 3548 + 90 190 175174 58 4 1 41 chain 206975 chr2 243199373 + 35158608 35160939 L1PA3long 6157 + 3825 6157 18719 71 0 2 730 0 1 568 7 0 32 1 0 4 0 1 61 5 8 4 0 1 515 1 2 332 chain 24518 chr2 243199373 + 35163224 35163523 AluSc 308 - 9 298 107449 11 10 0 278 chain 81515 chr2 243199373 + 35173482 35174426 L1PA5 6144 - 4 958 42971 335 1 0 552 6 17 50 chain 6077 chr2 243199373 + 35174616 35174761 MER67D 511 - 357 500 184602 17 15 16 44 35 32 34 chain 23678 chr2 243199373 + 35200003 35200273 AluY 311 + 36 307 112161 96 0 1 174 chain 15538 chr2 243199373 + 35200295 35200587 L1PA15 4387 - 60 340 139777 12 3 1 38 24 21 32 9 8 7 4 0 23 1 0 33 0 1 20 1 0 27 1 0 57 chain 1534 chr2 243199373 + 35217389 35217434 LTR12D 1347 + 633 678 197657 45 chain 11987 chr2 243199373 + 35217463 35217871 LTR12D 1347 + 438 1075 152261 46 2 0 39 21 188 63 210 274 27 chain 17252 chr2 243199373 + 35220954 35221187 MER75B 242 + 0 242 134919 44 0 7 60 6 8 123 chain 32187 chr2 243199373 + 35222740 35223174 LTR71A 459 - 0 459 80547 74 6 8 147 14 37 193 chain 3602 chr2 243199373 + 35229580 35229618 L1PA10 4194 + 1539 1577 213620 38 chain 7173 chr2 243199373 + 35229627 35229712 L1P3 4156 + 3793 3878 176253 85 chain 17465 chr2 243199373 + 35232148 35232354 AluSp 311 + 93 300 134342 113 0 1 93 chain 533035 chr2 243199373 + 35237514 35243657 L1PA4 6152 + 1 6152 3846 127 14 0 14 0 14 1028 5 4 1271 1 2 341 0 1 380 1 0 611 0 5 115 3 1 99 0 2 1282 0 4 631 0 1 104 0 1 102 3 0 11 chain 92545 chr2 243199373 + 35246143 35247281 L1PA6 6164 - 3 1137 38803 9 3 0 326 0 1 404 5 2 164 6 7 221 chain 8508 chr2 243199373 + 35247281 35247379 L1PA6 6164 + 4936 5034 167757 98 chain 148189 chr2 243199373 + 35281652 35283738 L1PBa 3878 - 130 2256 24858 11 2 0 21 2 1 76 0 3 366 1 0 47 5 1 33 23 0 134 2 3 81 0 7 28 27 19 100 0 1 20 8 13 59 21 66 201 1 0 307 3 4 32 0 17 475 chain 54623 chr2 243199373 + 35312302 35312953 L1PA7 6471 + 5801 6470 55955 388 0 1 204 0 17 59 chain 12017 chr2 243199373 + 35323708 35323842 L1P1 4361 - 2003 2137 152129 134 chain 513611 chr2 243199373 + 35332328 35338075 L1PA3long 6157 - 410 6157 5822 605 0 1 512 0 1 1203 3 1 240 0 1 492 0 1 1695 2 0 995 chain 391322 chr2 243199373 + 35350090 35355337 L1PA8A 6298 + 44 6281 10416 14 19 13 9 5 0 20 4 1 18 29 20 9 1 0 6 7 6 29 2 0 15 2 0 4 1 0 13 1 0 8 1 0 5 2 1 8 1 0 14 4 0 8 1 0 34 3 9 20 20 14 65 2 0 15 1 0 11 1 0 4 13 12 225 5 6 99 4 3 78 3 5 234 0 4 29 4 1 8 2 0 80 36 3 42 0 3 594 0 2 79 1 2 1256 6 13 20 7 1052 538 2 0 465 10 11 187 0 3 70 0 4 15 2 1 287 2 0 5 0 2 389 0 3 14 chain 49800 chr2 243199373 + 35401447 35402089 LTR6A 649 - 1 649 59157 9 1 2 8 0 1 193 1 0 18 0 4 255 0 1 157 chain 105007 chr2 243199373 + 35407012 35408187 L1PA4 6152 - 9 1184 35499 1175 chain 20660 chr2 243199373 + 35424102 35424447 THE1B 368 + 0 349 125108 169 1 0 11 79 84 85 chain 2861 chr2 243199373 + 35427436 35427469 MER58A 224 + 46 79 227666 33 chain 53474 chr2 243199373 + 35439919 35440517 L1PA3long 6157 - 1 599 56706 598 chain 36256 chr2 243199373 + 35440520 35440920 L1PA3long 6157 + 5159 5560 74554 376 0 1 24 chain 234750 chr2 243199373 + 35458514 35461125 L1PA4 6152 - 14 2626 17044 99 0 1 2512 chain 5640 chr2 243199373 + 35472227 35472347 THE1D 372 - 1 119 188658 55 39 37 26 chain 8987 chr2 243199373 + 35487959 35488072 L1PA8 5853 - 0 112 165674 92 2 1 19 chain 73263 chr2 243199373 + 35520919 35521748 L1PA5 6144 + 5312 6144 46902 61 0 2 745 0 1 23 chain 538286 chr2 243199373 + 35544834 35550961 L1PA4 6152 - 9 6146 3106 669 0 1 187 0 4 933 0 1 2214 0 3 943 3 2 579 0 1 171 1 2 427 chain 10827 chr2 243199373 + 35558610 35558942 MER101-int 1169 + 632 952 156884 16 70 73 4 1 0 7 7 0 38 16 12 19 3 5 73 42 37 36 chain 88032 chr2 243199373 + 35567839 35569193 HUERS-P2-int 2744 + 29 1328 40361 26 2 1 24 8 6 5 1 0 53 1 0 19 33 27 44 128 87 6 1 0 105 2 1 17 1 0 8 1 2 11 2 0 7 0 4 103 0 2 16 1 0 141 2 0 5 1 0 266 1 0 313 chain 25164 chr2 243199373 + 35572576 35573101 L1PB1 5432 + 4942 5427 103941 33 2 1 127 17 15 14 2 0 10 3 2 12 22 16 34 3 0 13 1 0 17 1 0 45 1 0 15 1 0 4 2 0 11 9 0 16 24 19 24 2 1 20 1 0 12 2 1 10 2 0 13 chain 32189 chr2 243199373 + 35583575 35583962 L1PA5 6144 - 2 389 80542 106 0 1 230 2 1 49 chain 27329 chr2 243199373 + 35620613 35620917 AluYk4 311 + 0 304 95178 304 chain 41776 chr2 243199373 + 35625324 35626034 L1PB1 5432 - 28 711 66932 13 1 0 21 1 0 12 0 1 11 2 0 15 10 7 27 14 1 15 1 0 45 1 0 15 2 1 53 2 0 8 4 1 12 1 0 8 1 0 24 1 0 6 6 5 27 0 2 56 6 0 7 0 6 137 6 14 6 6 0 127 chain 90220 chr2 243199373 + 35638566 35639587 L1PA4 6152 - 439 1460 39569 1021 chain 17662 chr2 243199373 + 35639587 35639785 L1PA4 6152 + 5700 5898 133798 198 chain 11416 chr2 243199373 + 35639786 35639925 L1PA4 6152 + 5898 6038 154613 105 0 1 34 chain 3811 chr2 243199373 + 35639925 35639965 L1PA4 6152 + 6039 6079 210214 40 chain 66524 chr2 243199373 + 35648566 35649575 L1PB1 5432 - 12 984 49854 16 1 0 13 1 0 21 1 0 24 24 19 30 14 1 14 6 5 41 1 0 15 3 2 19 1 0 33 2 0 8 5 1 9 1 0 11 1 0 24 1 0 316 7 5 88 0 2 77 3 0 178 chain 301688 chr2 243199373 + 35663647 35667242 HERVH-int 3825 - 0 3818 13332 376 4 1 9 5 8 53 0 2 464 0 1 42 1 0 730 1 4 131 0 4 309 0 5 227 0 10 299 0 1 370 0 1 9 0 2 10 0 1 59 1 79 14 0 108 10 7 8 82 10 14 49 1 0 49 0 3 77 0 2 181 1 0 14 chain 30322 chr2 243199373 + 35667257 35667653 LTR7 482 - 6 482 83858 152 0 10 19 0 31 39 0 1 109 8 46 69 chain 31118 chr2 243199373 + 35684315 35684665 L1PA3long 6157 - 0 350 82309 350 chain 7322 chr2 243199373 + 35696670 35696774 U6 107 + 0 107 175289 36 8 11 60 chain 415789 chr2 243199373 + 35702969 35708451 L1PA8 5853 + 50 5853 9645 22 2 0 10 60 26 194 12 0 352 12 11 484 0 1 5 1 0 84 9 0 86 7 4 92 1 0 230 1 0 367 27 0 100 0 1 653 0 1 93 17 16 24 9 10 257 0 36 15 4 5 164 0 1 29 5 19 261 0 7 79 1 2 14 13 8 136 15 15 429 1 20 154 0 1 443 2 3 35 0 1 19 2 338 157 1 0 20 4 6 19 2 0 67 14 12 51 3 2 19 6 5 35 0 1 52 chain 238779 chr2 243199373 + 35736787 35739776 L1PA7 6471 - 7 3048 16840 453 8 10 30 1 19 252 0 2 11 0 4 61 1 4 1044 5 24 181 0 1 147 9 11 40 0 1 148 8 6 5 0 1 442 11 12 132 chain 36758 chr2 243199373 + 35754024 35754490 MER4A1 472 - 0 466 73865 296 1 0 4 4 5 161 chain 108444 chr2 243199373 + 35756965 35758172 L1PA4 6152 - 209 1418 34580 564 0 2 643 chain 27414 chr2 243199373 + 35758172 35758473 L1PA4 6152 + 5850 6151 94923 301 chain 541425 chr2 243199373 + 35788129 35794271 L1PA4 6152 - 0 6152 2600 151 7 7 1479 0 1 498 0 2 784 11 10 43 1 0 743 0 4 20 2 0 440 0 1 634 1 9 843 1 0 283 1 0 200 chain 24097 chr2 243199373 + 35822115 35822393 L1PA5 6144 - 5 286 109757 43 0 3 235 chain 3370 chr2 243199373 + 35851790 35851828 Tigger3b 1229 - 1137 1175 217691 38 chain 24512 chr2 243199373 + 35857375 35857704 THE1D-int 1627 - 1283 1612 107485 38 0 1 169 0 1 93 10 8 19 chain 11475 chr2 243199373 + 35858053 35858190 THE1D 372 - 6 143 154402 137 chain 29238 chr2 243199373 + 35931368 35931682 AluYb8 318 - 4 318 87866 314 chain 318050 chr2 243199373 + 35960206 35964717 L1PA11 4918 + 16 4503 12671 26 2 0 36 4 1 23 3 4 9 16 13 53 6 5 27 2 0 5 6 5 223 0 1 24 1 0 52 0 1 141 0 1 84 1 0 195 5 4 89 0 16 301 1 9 44 5 2 59 0 1 195 139 14 126 12 9 400 8 7 15 19 23 202 15 15 376 0 4 145 0 1 269 6 7 534 0 1 19 5 0 24 2 10 26 0 78 39 0 1 170 0 5 39 0 1 104 2 0 33 0 4 20 12 11 10 3 0 66 3 1 13 2 1 15 chain 189474 chr2 243199373 + 35974078 35976188 L1PA4 6152 + 4026 6140 20099 321 0 4 308 1 0 1306 0 1 174 chain 11174 chr2 243199373 + 35979408 35979550 L1MA1 4479 - 816 958 155545 142 chain 504837 chr2 243199373 + 35991509 35997345 L1PA4 6152 + 0 6139 6552 46 6 0 1186 3 6 5 3 0 374 0 301 367 1 0 33 0 3 929 0 3 700 0 1 937 0 1 1073 0 1 173 chain 2675 chr2 243199373 + 36005209 36005462 THE1A 353 + 0 251 110270 105 16 15 22 1 0 109 chain 6222 chr2 243199373 + 36005466 36005553 THE1A 353 + 268 353 183394 33 3 1 51 chain 123074 chr2 243199373 + 36005553 36007132 THE1A-int 1579 + 0 1573 30019 15 21 23 178 4 0 91 0 1 415 15 16 74 8 3 134 10 11 456 10 8 148 chain 16644 chr2 243199373 + 36007137 36007369 THE1A 353 + 0 233 136545 107 4 3 31 1 0 39 0 3 50 chain 1047 chr2 243199373 + 36007381 36007480 THE1A 353 + 251 350 110270 99 chain 5626 chr2 243199373 + 36015140 36015207 HERVL18-int 2198 + 595 662 188825 67 chain 12222 chr2 243199373 + 36016623 36016809 MER50 708 + 519 685 151334 37 0 6 6 27 0 81 0 1 35 chain 29449 chr2 243199373 + 36025016 36025335 L1PA4 6152 - 381 700 86850 319 chain 11013 chr2 243199373 + 36025335 36025461 L1PA4 6152 + 5764 5892 156148 69 0 2 57 chain 22799 chr2 243199373 + 36025462 36025724 L1PA4 6152 + 5892 6151 116579 244 3 0 15 chain 313580 chr2 243199373 + 36028480 36032942 L1PB1 5432 + 82 5413 12873 93 0 1 23 0 2 101 21 0 217 58 13 12 0 45 462 17 15 329 1 0 7 2 0 5 43 42 19 0 4 124 0 6 18 0 9 276 0 2 590 1 0 49 2 6 73 0 2 215 1 0 58 9 16 290 0 1 160 1 2 365 2 3 19 26 919 32 6 1 392 77 67 53 2 1 16 1 0 44 1 0 15 1 0 4 21 12 15 8 5 14 2 0 24 1 0 34 1 0 9 chain 239691 chr2 243199373 + 36039245 36042189 HERVH-int 3825 + 656 3823 16791 42 2 1 52 1 0 11 0 10 5 0 1 65 0 3 74 0 1 4 4 1 106 2 3 98 0 4 232 5 4 8 0 1 49 9 0 27 0 2 312 0 3 584 0 6 468 3 0 285 0 200 7 0 10 17 6 0 6 5 11 39 31 28 162 0 2 223 chain 25744 chr2 243199373 + 36043438 36043843 LTR7 482 + 0 482 101108 69 29 17 15 16 66 33 0 3 21 8 40 72 0 4 142 chain 37108 chr2 243199373 + 36049062 36049521 MER4A1 472 - 11 472 73371 360 1 3 98 chain 64970 chr2 243199373 + 36073454 36074201 L1PA5 6144 - 1523 2273 50586 277 1 3 398 0 1 71 chain 122719 chr2 243199373 + 36074202 36075570 L1PA5 6144 + 4636 6009 30155 655 0 4 590 0 1 123 chain 2661 chr2 243199373 + 36093743 36093776 L1MA9 1812 + 1677 1709 230892 28 1 0 4 chain 521678 chr2 243199373 + 36125987 36132085 L1PA5 6144 - 0 6144 4997 477 0 1 492 0 37 890 1 0 315 0 1 761 1 0 5 0 1 4 1 0 74 0 1 63 0 1 264 2 1 163 0 1 104 0 1 215 0 1 1100 10 1 1021 0 14 135 chain 53048 chr2 243199373 + 36177833 36178538 L1PA8 5853 - 0 698 56987 93 1 0 19 2 1 51 13 10 71 2 0 44 1 0 265 0 1 143 chain 8724 chr2 243199373 + 36200083 36200199 L1P1 4361 - 89 206 167064 51 1 0 25 0 2 39 chain 26136 chr2 243199373 + 36215591 36215892 AluSp 311 - 8 309 99459 301 chain 28274 chr2 243199373 + 36217383 36217698 AluY 311 + 0 311 92021 123 8 4 184 chain 10931 chr2 243199373 + 36234659 36234786 L1PA7 6471 + 6337 6464 156483 127 chain 3607 chr2 243199373 + 36251199 36251265 L1MA4 2864 + 2561 2626 213519 19 13 12 34 chain 31209 chr2 243199373 + 36278412 36278854 L1PA15 4387 - 3834 4280 82147 99 6 5 51 2 1 87 6 14 46 2 0 143 chain 30734 chr2 243199373 + 36283201 36283594 L1PA7 6471 - 15 416 82975 130 5 10 6 5 0 102 8 16 137 chain 369801 chr2 243199373 + 36289626 36293805 L1PA4 6152 + 1953 6143 11101 476 4 3 287 10 9 485 0 1 477 0 2 888 0 1 53 2 0 665 0 1 777 0 10 55 chain 442965 chr2 243199373 + 36315844 36323112 L1PA8 5853 + 50 5853 8957 21 2 0 11 1 0 11 55 19 122 0 1 4 13 13 45 24 12 325 10 7 238 0 3 263 1 0 407 0 5 136 6 7 114 4 7 10 8 4 183 18 0 68 1 0 159 0 8 225 0 24 379 3 0 33 17 8 7 0 4 28 0 1 163 2 0 240 1408 10 974 8 6 265 0 1 363 0 1 12 4 3 88 1 2 80 0 3 5 2 0 125 0 1 111 31 7 98 0 1 43 1 0 44 2 0 71 1 0 7 17 19 34 3 2 19 1 0 93 chain 103486 chr2 243199373 + 36319201 36320595 LTR12C 1709 + 0 1709 35868 464 8 10 125 1 0 105 0 159 93 0 41 74 0 47 97 44 13 212 0 102 68 14 11 4 1 0 84 chain 496537 chr2 243199373 + 36324751 36330283 L1PA3long 6157 + 603 6152 7035 107 1 0 1987 1 0 2603 0 1 145 0 17 389 0 1 299 chain 143130 chr2 243199373 + 36332490 36334091 L1P1 4361 - 1448 3052 25633 574 0 3 1027 chain 180437 chr2 243199373 + 36334094 36336093 L1PA4 6152 + 3987 5991 20948 873 0 1 344 0 4 95 0 4 477 4 0 206 chain 13106 chr2 243199373 + 36336093 36336242 L1PA4 6152 + 6000 6149 147823 149 chain 565711 chr2 243199373 + 36339649 36345680 L1HS 6032 - 0 6032 173 4948 0 1 1083 chain 17551 chr2 243199373 + 36377175 36377642 L1PA15 4387 + 3907 4327 134121 26 1 0 58 77 80 15 24 23 21 1 0 10 1 0 45 1 0 19 4 0 12 2 1 47 54 18 10 2 0 22 3 1 12 chain 3526 chr2 243199373 + 36394417 36394456 L1PA3long 6157 + 6111 6150 214957 39 chain 159470 chr2 243199373 + 36406438 36408319 SVA_D 2077 + 7 2077 23407 48 0 8 153 1 0 140 1 0 414 40 0 115 40 0 31 1 187 127 0 78 32 0 1 47 1 0 675 1 0 14 chain 26520 chr2 243199373 + 36425832 36426134 L1PA4 6152 - 0 299 97971 5 2 0 146 1 0 148 chain 227638 chr2 243199373 + 36443722 36446288 L1PA4 6152 + 3577 6152 17441 1724 1 0 674 15 20 146 0 5 6 chain 4166 chr2 243199373 + 36449042 36449086 MLT1C 463 - 362 406 205021 44 chain 11200 chr2 243199373 + 36475608 36475734 L1PA5 6144 - 4 130 155423 126 chain 31669 chr2 243199373 + 36507778 36508175 THE1B-int 1605 - 0 413 81378 8 0 2 167 0 15 31 11 10 180 chain 6460 chr2 243199373 + 36519119 36519232 MER53 195 + 43 163 181557 63 26 33 24 chain 224498 chr2 243199373 + 36536508 36539572 L1PA10 4194 + 931 4073 17625 34 2 3 63 1 2 4 1 0 154 15 29 243 5 23 274 2 0 87 1 2 83 9 8 385 1 0 259 0 1 17 11 10 10 0 2 22 5 6 81 5 8 395 2 0 91 0 1 186 5 23 22 0 1 5 8 7 108 5 2 157 0 2 38 0 18 149 21 29 98 chain 293093 chr2 243199373 + 36539572 36543120 L1P2 5180 - 1619 5150 13819 54 0 3 321 1 0 12 3 1 851 21 14 262 0 1 592 0 1 348 0 1 307 1 0 6 1 0 201 13 5 60 15 14 46 2 1 62 8 9 142 1 0 53 1 0 45 1 0 84 1 2 33 chain 91589 chr2 243199373 + 36550334 36551401 MER11C 1089 + 0 1073 39097 317 0 4 217 0 1 48 13 14 472 chain 8550 chr2 243199373 + 36698764 36698869 MER30 238 - 0 103 168017 48 2 0 55 chain 15441 chr2 243199373 + 36820246 36820428 THE1A 353 - 12 194 140075 182 chain 84298 chr2 243199373 + 36820435 36821472 THE1A-int 1579 - 533 1571 41785 169 0 1 228 3 2 162 2 0 196 1 0 116 3 4 58 0 3 99 chain 29056 chr2 243199373 + 36821492 36821834 THE1A 353 - 12 353 88732 231 2 1 109 chain 27509 chr2 243199373 + 36826242 36826662 LTR7B 505 + 0 497 94629 38 0 2 68 5 16 51 0 38 12 3 27 26 0 2 38 0 1 38 6 5 26 4 5 48 14 13 43 chain 282351 chr2 243199373 + 36826670 36830216 HERVH-int 3825 + 0 3825 14512 50 1 0 330 0 2 138 5 4 8 5 0 38 1 0 10 1 0 24 1 52 42 2 1 20 2 0 6 1 2 26 1 2 24 1 0 79 1 3 209 13 14 27 13 16 102 15 0 456 4 31 217 2 1 72 0 4 121 0 1 938 17 19 31 8 218 88 23 23 85 0 1 63 0 2 225 chain 29794 chr2 243199373 + 36831475 36831904 LTR7B 505 + 0 503 85455 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 38 6 5 26 4 5 48 14 13 49 chain 3296 chr2 243199373 + 36843821 36843861 MER4D1 891 - 337 377 219073 40 chain 9434 chr2 243199373 + 36844748 36844865 LTR23 429 - 21 138 163384 117 chain 12750 chr2 243199373 + 36852906 36853046 L1PA2 6032 + 5892 6032 149253 140 chain 29390 chr2 243199373 + 36856688 36857081 MER4B 649 + 234 641 87117 110 0 15 34 0 2 114 1 0 55 11 10 59 1 0 8 chain 178683 chr2 243199373 + 36867926 36872143 L1MA3 4352 + 236 4346 21107 74 2 0 6 7 0 79 0 1 97 0 1 13 1 16 42 1556 1488 51 9 1 40 2 1 52 0 2 113 1 0 7 8 6 26 6 3 59 3 0 169 1 0 106 0 1 33 1 0 167 1 0 4 0 1 492 34 31 279 0 5 125 11 9 145 15 21 5 0 2 17 11 7 66 56 29 59 1 0 7 0 5 31 3 0 4 0 1 23 2 0 24 1 0 6 1 0 29 1 0 11 7 3 15 chain 8072 chr2 243199373 + 36889937 36890046 SVA_A 1864 + 770 873 170636 30 3 0 41 3 0 32 chain 120692 chr2 243199373 + 36915221 36916609 LTR12C 1709 + 0 1709 30800 483 0 1 310 0 318 5 3 1 106 0 4 481 chain 12882 chr2 243199373 + 36955464 36955657 Tigger3b 1229 + 567 754 148701 19 8 0 68 1 3 38 0 1 54 1 0 4 chain 4317 chr2 243199373 + 37012366 37012421 MER5A1 166 - 3 58 203007 55 chain 2979 chr2 243199373 + 37019214 37019251 MER5B 177 - 34 71 225467 37 chain 24650 chr2 243199373 + 37053294 37053594 AluY 311 + 11 298 106719 122 2 0 156 11 0 9 chain 21304 chr2 243199373 + 37057151 37057481 AluY 311 + 11 306 122842 30 3 0 58 28 0 27 4 0 43 7 6 34 4 5 92 chain 12461 chr2 243199373 + 37059484 37059765 L1PB1 5432 - 10 250 150414 17 2 1 13 2 1 20 1 0 24 2 0 14 1 0 5 3 1 18 26 7 5 2 0 10 1 0 5 1 0 45 1 0 15 2 1 18 9 1 19 chain 68766 chr2 243199373 + 37059902 37060814 L1PA8 5853 - 32 945 48913 60 2 1 19 2 1 39 0 1 4 3 4 13 14 13 58 2 0 19 1 2 23 1 0 251 4 0 214 1 4 8 0 3 75 0 2 99 chain 23742 chr2 243199373 + 37089883 37090157 AluYc3 301 - 18 293 111824 168 1 2 105 chain 5877 chr2 243199373 + 37099640 37099716 MLT1F1 559 + 461 536 186412 23 1 0 52 chain 25951 chr2 243199373 + 37137033 37137335 AluSq10 312 + 0 302 100207 302 chain 4145 chr2 243199373 + 37138669 37138754 MER58A 224 + 128 220 205320 16 25 32 44 chain 22623 chr2 243199373 + 37150016 37150298 AluSc 308 + 7 294 117470 16 1 6 265 chain 28252 chr2 243199373 + 37195681 37196084 MER51B 395 + 1 394 92103 33 18 5 206 1 0 86 9 13 50 chain 23351 chr2 243199373 + 37204174 37204464 AluSx1 309 + 6 298 113915 260 1 3 29 chain 5363 chr2 243199373 + 37206427 37206519 L1MB8 1703 + 1494 1588 191397 57 14 16 21 chain 24059 chr2 243199373 + 37210394 37210708 AluSp 311 + 5 308 109987 10 1 0 51 0 2 60 12 0 180 chain 8156 chr2 243199373 + 37228679 37228777 MER30B 195 - 14 112 170193 98 chain 22050 chr2 243199373 + 37233547 37233802 AluSp 311 + 45 300 120017 255 chain 6595 chr2 243199373 + 37259474 37259552 AluJr4 308 - 70 148 180498 78 chain 24612 chr2 243199373 + 37281335 37281612 AluSp 311 - 10 300 106925 132 0 13 145 chain 7619 chr2 243199373 + 37303543 37303736 MLT1C 463 + 227 423 173420 64 82 85 47 chain 10568 chr2 243199373 + 37308369 37308486 L1PA5 6144 - 4 121 157962 117 chain 23240 chr2 243199373 + 37313665 37313959 AluSz6 309 + 10 300 114496 40 4 0 250 chain 23239 chr2 243199373 + 37347410 37347678 AluYc 301 + 32 300 114497 88 0 2 42 2 0 136 chain 4564 chr2 243199373 + 37371056 37371121 MER2 342 + 151 214 200057 29 3 1 33 chain 31017 chr2 243199373 + 37374461 37374805 L1PA4 6152 - 1 348 82483 54 0 4 201 1 0 88 chain 23447 chr2 243199373 + 37378939 37379215 AluYc 301 + 0 277 113395 120 0 2 138 1 0 17 chain 29166 chr2 243199373 + 37391451 37391761 AluYa5 310 - 0 310 88221 310 chain 76132 chr2 243199373 + 37452460 37453428 LTR5_Hs 974 + 0 974 45403 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 23801 chr2 243199373 + 37463648 37463936 AluY 311 + 11 295 111470 107 5 0 14 0 1 162 chain 4753 chr2 243199373 + 37498511 37498570 MER58B 340 + 142 202 197887 14 0 1 45 chain 12732 chr2 243199373 + 37511941 37512087 L1PA4 6152 - 0 151 149322 6 0 5 140 chain 24751 chr2 243199373 + 37536716 37537010 AluSc5 308 + 9 300 106169 7 3 0 284 chain 5607 chr2 243199373 + 37540286 37540463 MER58A 224 - 42 224 189017 52 49 50 28 35 39 13 chain 3646 chr2 243199373 + 37566218 37566310 MER5B 177 + 15 107 212852 32 40 40 20 chain 23451 chr2 243199373 + 37583876 37584165 AluSc5 308 + 8 296 113379 186 2 1 101 chain 247250 chr2 243199373 + 37609664 37612650 HERVH-int 3825 - 41 3060 16381 590 0 1 74 0 1 700 22 32 36 0 4 44 0 1 193 0 2 5 10 15 82 0 4 72 0 7 117 13 14 212 4 0 121 0 2 24 9 0 335 0 4 297 4 5 6 0 3 16 chain 3440 chr2 243199373 + 37612707 37612747 LTR7B 505 - 64 106 216375 35 0 2 5 chain 114177 chr2 243199373 + 37647040 37648310 L1PA4 6152 - 1 1272 33038 7 0 1 1263 chain 405962 chr2 243199373 + 37656239 37661926 L1PB1 5432 - 15 5355 9914 13 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 29 16 12 4 3 41 1 0 15 2 1 51 2 0 11 6 2 9 1 0 9 1 0 24 1 0 11 1 0 106 3 2 29 0 1 4 1 0 157 1 0 35 5 8 139 3 0 82 8 11 159 3 0 30 0 5 4 341 0 156 0 10 95 0 1 333 0 6 357 8 15 98 4 18 177 0 3 295 0 1 168 0 1 105 0 1 113 0 4 55 5 0 136 1 0 191 0 4 11 11 1 231 1 2 39 0 1 34 0 2 257 9 1 165 3 4 215 19 4 146 0 1 272 1 0 190 1 2 74 5 6 27 0 3 99 0 2 122 chain 47001 chr2 243199373 + 37667309 37667859 L1PA5 6144 - 1 552 61209 6 2 0 50 10 13 482 chain 18725 chr2 243199373 + 37681221 37681434 L1PA3long 6157 - 0 213 130894 213 chain 20941 chr2 243199373 + 37696578 37696996 L1PB1 5432 + 5042 5420 124147 61 1 2 11 55 43 8 2 0 53 2 1 14 0 1 45 4 0 15 3 0 6 20 8 17 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 142120 chr2 243199373 + 37720907 37724348 L1PA2 6032 - 0 3520 25799 1297 12 798 46 11 10 14 144 143 61 121 121 17 13 13 23 9 12 29 3 0 6 9 12 29 1114 405 14 112 113 357 chain 25180 chr2 243199373 + 37737618 37737985 Tigger2 2703 + 2345 2703 103849 303 46 37 18 chain 79685 chr2 243199373 + 37741094 37741972 L1PA4 6152 - 1 880 43744 771 0 1 107 chain 22147 chr2 243199373 + 37766975 37767241 AluSc 308 - 32 298 119603 266 chain 29821 chr2 243199373 + 37774315 37774638 L1PA2 6032 + 5709 6032 85368 323 chain 30540 chr2 243199373 + 37774641 37775013 THE1B-int 1605 - 1230 1605 83355 46 1 0 22 0 1 190 0 3 113 chain 22730 chr2 243199373 + 37775017 37775358 THE1B 368 - 4 368 116924 42 0 1 78 37 45 15 1 0 4 0 1 6 1 0 117 0 15 40 chain 518960 chr2 243199373 + 37821340 37827469 L1PA6 6164 - 13 6164 5273 20 19 8 119 1 2 277 1 0 116 1 2 279 6 10 245 5 6 20 0 6 153 0 9 14 2 6 388 0 3 958 0 1 319 0 1 167 0 1 41 0 2 651 2 0 140 0 1 413 0 1 512 0 1 12 0 1 460 1 0 219 1 0 567 chain 15171 chr2 243199373 + 37890844 37891035 MLT2A2 560 + 0 195 140852 31 1 6 143 1 0 15 chain 26807 chr2 243199373 + 37915164 37915507 THE1C 375 - 25 375 96948 308 0 5 12 6 8 17 chain 139002 chr2 243199373 + 37917952 37919534 L1PA4 6152 + 4556 6140 26304 745 7 8 266 0 1 564 chain 11569 chr2 243199373 + 37928223 37928363 MER2 342 + 120 260 154024 140 chain 272659 chr2 243199373 + 37928397 37932037 L1PB1 5432 - 23 3606 15038 5 1 0 13 1 0 21 1 0 17 31 26 19 27 16 12 1 0 18 6 7 18 19 17 52 2 0 10 16 11 13 1 0 19 7 0 8 3 4 19 0 1 453 4 0 21 6 10 230 0 1 11 0 2 617 15 14 17 1 2 375 7 15 473 2 1 8 0 1 338 12 0 31 21 0 280 1 0 357 chain 2520 chr2 243199373 + 37933263 37933308 MADE1 96 + 49 96 232905 20 5 7 20 chain 542968 chr2 243199373 + 37950306 37956413 L1PA5 6144 + 0 6129 2348 454 0 1 18 2 6 953 0 1 1603 0 1 126 0 1 439 0 1 736 0 4 103 0 3 342 0 1 493 1 2 512 0 1 130 0 3 195 chain 81798 chr2 243199373 + 37977734 37978723 LTR5B 1012 + 0 1012 42843 128 1 14 257 0 2 428 0 7 134 4 5 37 chain 186509 chr2 243199373 + 38031143 38033246 L1PA4 6152 - 9 2112 20379 560 2 1 287 0 1 1254 chain 25839 chr2 243199373 + 38033316 38033670 THE1B 368 + 0 367 100708 41 12 27 104 2 1 29 2 0 82 0 2 7 1 0 74 chain 26244 chr2 243199373 + 38035575 38035931 THE1B 368 + 0 368 99040 44 0 15 43 4 3 70 1 0 25 4 0 93 1 0 13 0 4 58 chain 11957 chr2 243199373 + 38038509 38038654 L1PB4 2604 - 52 197 152375 145 chain 3124 chr2 243199373 + 38119858 38119893 MER34A1 583 + 9 44 222496 35 chain 30906 chr2 243199373 + 38119894 38120315 MER57A1 433 - 0 433 82677 13 9 0 65 3 18 55 1 0 28 0 6 137 0 1 110 chain 22681 chr2 243199373 + 38127040 38127367 THE1B 368 + 0 341 117159 44 23 38 92 11 10 157 chain 8002 chr2 243199373 + 38130873 38130986 LTR48 738 - 474 586 171043 67 1 0 4 1 0 4 4 5 32 chain 22778 chr2 243199373 + 38131430 38131834 LTR24B 570 - 25 452 116691 34 2 1 9 11 33 115 37 36 103 27 30 66 chain 9508 chr2 243199373 + 38135280 38135388 L1PA5 6144 + 6035 6143 163025 108 chain 42741 chr2 243199373 + 38140259 38140794 MLT2A2 560 + 0 546 65731 58 0 1 4 1 0 248 1 0 88 4 15 75 0 1 56 chain 43385 chr2 243199373 + 38144608 38145209 MER41B 635 - 20 635 64950 8 0 3 7 0 1 30 12 17 37 0 1 28 24 27 329 0 1 126 chain 154419 chr2 243199373 + 38159224 38160958 SVA_D 2077 - 18 2063 24055 581 0 229 36 1 0 175 0 2 45 0 83 147 3 0 21 8 15 688 5 0 19 1 0 4 chain 518740 chr2 243199373 + 38163045 38169498 L1PA7 6471 - 2 6468 5300 14 0 1 44 1 0 170 0 1 175 0 5 213 3 4 221 2 1 279 1 0 8 4 3 13 5 0 19 1 0 36 4 1 62 0 1 124 0 8 111 1 0 278 0 8 416 9 4 358 0 1 284 1 0 3 2 0 64 0 1 52 3 4 248 0 1 129 0 4 393 0 3 70 1 2 122 3 10 747 1 0 139 6 0 537 0 1 462 0 1 199 10 2 173 0 1 172 0 3 60 chain 26943 chr2 243199373 + 38182630 38182985 THE1A 353 + 0 353 96473 111 1 0 52 1 0 4 13 14 120 1 0 52 chain 512988 chr2 243199373 + 38183801 38190299 L1PA7 6471 - 1 6468 5881 18 1 0 27 0 1 115 11 12 287 14 13 37 6 5 23 0 1 128 0 1 114 0 12 55 2 1 283 5 4 129 0 1 526 0 8 90 0 1 4 1 0 265 2 0 5 0 2 91 23 8 101 0 1 553 0 4 42 1 0 259 0 4 139 0 4 323 4 0 59 17 23 209 48 0 318 0 1 134 5 6 737 0 2 337 26 26 237 0 1 73 0 1 167 25 19 11 3 0 254 0 1 154 chain 80415 chr2 243199373 + 38190460 38191390 SVA_C 1631 - 1 930 43424 587 1 0 38 0 1 125 0 1 8 14 15 136 3 0 18 chain 29042 chr2 243199373 + 38202511 38202852 L1PA7 6471 + 6121 6468 88793 289 0 6 52 chain 125577 chr2 243199373 + 38203995 38205493 SVA_B 1603 - 6 1603 29220 354 0 2 47 0 4 175 0 1 24 1 0 29 0 124 17 40 0 85 0 1 690 5 0 13 0 13 18 chain 540457 chr2 243199373 + 38231847 38238001 L1PA4 6152 - 9 6151 2742 113 4 0 376 0 1 24 4 0 1155 1 0 2298 0 2 650 5 0 508 2 1 1014 chain 21951 chr2 243199373 + 38247201 38247482 MER1A 529 - 0 280 120423 20 1 0 241 1 0 10 0 1 8 chain 93934 chr2 243199373 + 38247482 38248821 LTR12C 1709 + 0 1709 38368 21 0 9 159 6 7 104 1 2 112 0 1 4 1 0 36 36 0 9 12 49 55 0 1 34 11 12 104 0 118 82 0 4 37 1 158 97 46 15 42 0 3 99 0 4 18 0 102 129 6 5 77 chain 12759 chr2 243199373 + 38253749 38253899 L1PA7 6471 - 3 153 149212 150 chain 18162 chr2 243199373 + 38256913 38257273 THE1B 368 - 0 359 132434 40 23 22 57 7 0 9 60 66 57 8 9 99 chain 24430 chr2 243199373 + 38284736 38285127 MSTA 426 + 0 403 107912 94 1 0 4 5 7 28 1 0 10 0 7 64 13 15 7 2 0 64 20 25 78 chain 64489 chr2 243199373 + 38289823 38290540 L1PA4 6152 - 62 779 50806 717 chain 34132 chr2 243199373 + 38290540 38290906 L1PA4 6152 + 4985 5351 77179 366 chain 26848 chr2 243199373 + 38307943 38308343 LTR7 482 - 0 482 96812 49 12 14 95 0 10 19 0 31 39 0 1 109 23 61 54 chain 296173 chr2 243199373 + 38309601 38313254 HERVH-int 3825 - 0 3825 13633 225 0 2 260 8 218 39 9 11 772 1 2 285 0 4 291 4 31 226 0 10 225 15 0 445 1 0 68 61 0 12 2 1 15 2 0 27 21 0 27 0 17 8 7 1 14 4 0 9 2 1 9 1 0 40 1 0 149 5 7 151 0 11 212 chain 26410 chr2 243199373 + 38321728 38322026 AluYk4 311 + 0 297 98376 123 1 0 174 chain 43924 chr2 243199373 + 38329147 38329885 L1PREC2 3366 - 302 1019 64303 5 1 0 11 2 0 38 8 19 20 37 20 25 0 1 4 4 1 15 80 65 30 0 9 48 3 1 40 3 0 229 0 1 135 chain 149869 chr2 243199373 + 38338350 38340188 L1PA8 5853 - 0 1857 24632 88 6 5 19 2 1 48 2 1 12 2 1 70 2 0 44 1 0 28 7 11 258 2 5 253 0 2 334 0 7 398 0 9 177 0 1 85 chain 535598 chr2 243199373 + 38359577 38365734 L1PA4 6152 - 26 6152 3502 472 0 1 24 4 0 1275 4 0 946 2 1 699 0 5 9 5 0 614 1 9 280 32 0 34 0 1 227 5 0 88 0 1 204 1 0 281 0 2 377 2 1 39 4 0 64 31 25 291 0 14 142 chain 3909 chr2 243199373 + 38378745 38378792 LTR54 533 + 486 533 208720 47 chain 18783 chr2 243199373 + 38411399 38411748 THE1B 368 - 12 368 130727 27 24 23 63 63 69 60 5 7 107 chain 7846 chr2 243199373 + 38424037 38424293 AluSp 311 - 8 302 172038 90 6 178 13 134 0 13 chain 21783 chr2 243199373 + 38433781 38434132 THE1C 375 + 5 368 121092 102 7 8 58 56 67 128 chain 22400 chr2 243199373 + 38436990 38437256 L1PA7 6471 + 6194 6461 118481 129 0 1 137 chain 19980 chr2 243199373 + 38449909 38450252 MSTA 426 - 58 420 127206 7 2 0 43 10 18 37 42 59 34 11 7 157 chain 35711 chr2 243199373 + 38461674 38462230 L1PB2 3958 + 3260 3838 75257 47 2 0 54 1 0 13 5 0 52 13 12 13 7 0 15 0 44 32 16 15 61 4 3 60 1 0 77 2 0 17 1 0 63 chain 4340 chr2 243199373 + 38480245 38480337 MER8 282 - 145 281 202713 15 29 73 48 chain 6380 chr2 243199373 + 38482421 38482561 MER58A 224 - 34 179 182180 24 35 41 31 1 2 37 2 0 10 chain 82566 chr2 243199373 + 38504925 38505902 LTR5_Hs 974 + 0 974 42512 419 7 0 40 0 4 448 1 0 12 0 1 50 chain 12026 chr2 243199373 + 38517002 38517151 L1PA5 6144 + 5995 6143 152091 4 1 0 144 chain 23845 chr2 243199373 + 38528113 38528402 AluSp 311 - 13 302 111212 289 chain 54895 chr2 243199373 + 38531853 38534216 L1MA3 4352 + 0 3140 55774 15 5 7 9 0 8 9 2 0 25 0 5 32 0 4 42 1 0 8 8 16 25 1 2 10 12 11 13 1 4 59 18 39 23 0 4 55 3 0 27 1 37 117 2 1 12 1365 1325 11 2 1 92 27 32 53 1 0 90 28 756 69 0 1 58 0 1 32 chain 24048 chr2 243199373 + 38537771 38538060 AluSp 311 - 5 303 110055 24 2 1 173 0 10 90 chain 8785 chr2 243199373 + 38539893 38540013 MSTA 426 + 260 401 166738 33 2 23 85 chain 24276 chr2 243199373 + 38561561 38561863 AluSp 311 + 0 292 108799 91 0 3 191 13 0 7 chain 9130 chr2 243199373 + 38565261 38565368 L1PA16 3655 + 3400 3507 164909 107 chain 21184 chr2 243199373 + 38570843 38571184 THE1B 368 + 0 356 123261 10 0 1 140 24 26 21 33 45 113 chain 22625 chr2 243199373 + 38571492 38571771 AluSx1 309 + 23 297 117459 265 5 0 9 chain 93985 chr2 243199373 + 38575792 38576823 L1PA3long 6157 + 5124 6157 38354 908 0 1 119 0 1 4 chain 26170 chr2 243199373 + 38597012 38597313 AluYf4 310 + 1 301 99325 122 3 0 155 0 2 21 chain 17701 chr2 243199373 + 38605467 38605678 AluSg7 307 - 94 307 133703 81 0 1 14 0 1 116 chain 27744 chr2 243199373 + 38614495 38614785 AluYa5 310 - 9 299 93887 290 chain 53968 chr2 243199373 + 38621453 38622183 L1PA15 4387 + 3281 4009 56388 409 6 8 28 3 0 87 0 2 12 4 0 63 2 0 12 3 7 23 1 0 77 chain 13288 chr2 243199373 + 38624875 38625046 LTR12C 1709 + 932 1191 147136 97 2 90 72 chain 152781 chr2 243199373 + 38629800 38631536 SVA_D 2077 + 6 2075 24254 25 9 0 885 2 1 12 0 38 36 0 305 65 0 1 8 0 8 11 8 0 655 1 0 19 chain 18316 chr2 243199373 + 38632482 38632721 MER4E1 777 - 321 553 132034 156 12 5 71 chain 17645 chr2 243199373 + 38632832 38633056 MER4E1 777 + 485 769 133854 44 0 58 168 0 2 12 chain 50902 chr2 243199373 + 38637937 38638507 L1PA5 6144 - 16 587 58369 322 0 1 248 chain 6285 chr2 243199373 + 38638834 38638908 LTR8 732 + 0 74 182918 74 chain 25488 chr2 243199373 + 38650428 38650813 MSTA 426 + 0 426 102278 94 1 0 4 13 35 20 0 6 31 16 18 28 2 0 64 4 18 108 chain 26258 chr2 243199373 + 38670799 38671180 THE1C 375 + 0 375 98985 70 14 0 7 0 14 90 11 6 162 1 0 26 chain 63439 chr2 243199373 + 38719750 38720439 L1PA2 6032 - 1 691 51269 108 0 1 581 chain 15600 chr2 243199373 + 38730021 38730282 MER39B 650 + 410 650 139585 123 34 13 56 6 5 23 0 1 19 chain 10643 chr2 243199373 + 38806448 38806561 L1PA3long 6157 + 6044 6157 157636 113 chain 25447 chr2 243199373 + 38824825 38825128 AluSg7 307 - 4 307 102467 303 chain 19608 chr2 243199373 + 38836322 38836558 THE1A 353 - 0 236 128366 236 chain 25919 chr2 243199373 + 38848964 38849256 AluYk4 311 + 0 291 100341 132 1 0 159 chain 28404 chr2 243199373 + 38851430 38851728 AluYd8 298 - 0 298 91562 298 chain 24853 chr2 243199373 + 38860572 38860857 AluY 311 + 8 294 105605 124 0 1 161 chain 11709 chr2 243199373 + 38861103 38861244 L1PA16 3655 - 93 234 153426 141 chain 25275 chr2 243199373 + 38864400 38864700 AluYf5 307 + 0 300 103350 260 10 8 10 0 2 20 chain 23976 chr2 243199373 + 38864840 38865117 AluY 311 + 8 287 110470 272 0 2 5 chain 33569 chr2 243199373 + 38896245 38896675 LTR2 463 + 0 463 78289 61 0 3 304 0 1 4 9 38 52 chain 24977 chr2 243199373 + 38915379 38915668 AluSp 311 + 8 297 104918 289 chain 11237 chr2 243199373 + 38943856 38944002 FAM 185 + 17 164 155269 125 1 2 20 chain 28358 chr2 243199373 + 38953358 38953667 AluYa5 310 - 1 310 91739 309 chain 129049 chr2 243199373 + 38982395 38983892 SVA_D 2077 - 0 2077 28305 18 1 0 621 1 0 32 0 404 14 2 41 30 2 1 115 0 40 34 3 7 4 1 0 10 0 37 19 0 40 243 1 15 323 1 7 22 chain 36182 chr2 243199373 + 39003820 39004641 MER41C 542 + 0 535 74655 49 0 1 80 323 12 165 14 35 18 4 7 168 chain 26537 chr2 243199373 + 39009659 39009955 AluY 311 + 4 299 97900 129 1 0 166 chain 19293 chr2 243199373 + 39013797 39014038 AluSc 308 + 0 240 129259 42 2 1 197 chain 23989 chr2 243199373 + 39026223 39026526 AluSp 311 + 0 300 110386 116 4 0 21 5 6 157 chain 3989 chr2 243199373 + 39047516 39047559 tRNA-Gln-CAG 43 - 0 43 207556 43 chain 3135 chr2 243199373 + 39047770 39047808 HY1 111 - 72 110 222249 38 chain 11540 chr2 243199373 + 39058464 39058613 AluSq10 312 - 13 154 154146 44 8 0 97 chain 5435 chr2 243199373 + 39098651 39098739 MSTD 398 - 19 106 190652 54 13 12 21 chain 67074 chr2 243199373 + 39190975 39191893 Charlie3 2679 - 0 2657 49627 58 28 26 19 1 0 272 0 1 80 0 1747 403 19 14 25 1 0 12 chain 3976 chr2 243199373 + 39234821 39234867 MADE1 96 - 50 96 207748 46 chain 11393 chr2 243199373 + 39253904 39254067 MER30 238 - 0 181 154732 100 13 31 50 chain 28127 chr2 243199373 + 39307095 39307611 MER1A 529 - 0 529 92548 29 39 41 65 0 3 103 1 0 82 77 86 23 17 17 80 chain 8274 chr2 243199373 + 39326742 39326882 L1MA9 1812 + 1131 1270 169548 58 1 0 47 21 21 13 chain 28738 chr2 243199373 + 39333449 39333759 AluYa5 310 + 0 309 90177 132 1 0 177 chain 8563 chr2 243199373 + 39355969 39356068 HY3 101 - 2 101 167939 99 chain 20488 chr2 243199373 + 39356089 39356541 L1MB2 1706 - 32 433 125660 38 80 63 117 5 0 99 83 54 30 chain 6183 chr2 243199373 + 39364801 39364877 Tigger2b_Pri 1066 + 826 902 183719 76 chain 4682 chr2 243199373 + 39387483 39387549 L1MA8 2339 + 2119 2186 198731 38 2 3 26 chain 4909 chr2 243199373 + 39394004 39394064 MLT1H2 457 - 0 60 196172 60 chain 20408 chr2 243199373 + 39414126 39414479 THE1D 372 + 0 372 125867 46 19 30 21 7 8 62 26 28 41 1 7 90 5 4 35 chain 23375 chr2 243199373 + 39420530 39420804 AluSp 311 - 26 300 113786 274 chain 355578 chr2 243199373 + 39424047 39429084 L1PB1 5432 + 381 5392 11459 60 27 26 77 0 1 63 8 7 141 1 0 12 0 1 177 12 3 118 0 2 317 11 16 11 1 0 26 0 5 296 12 6 100 1 5 220 5 11 333 18 18 67 6 1 96 0 1 4 1 0 116 1 0 115 2 1 101 0 2 229 0 1 356 0 7 7 24 17 70 1 0 28 15 12 5 0 3 56 1 4 254 1 0 14 0 1 375 1 22 17 2 0 56 0 4 7 1 0 127 0 4 8 2 0 47 0 1 33 7 6 104 11 4 43 0 1 173 0 1 69 1 2 10 5 2 18 1 0 7 3 2 12 2 0 3 2 0 9 2 0 9 13 1 10 10 1 39 5 8 44 1 0 16 25 12 18 9 6 14 27 24 22 chain 7299 chr2 243199373 + 39439262 39439355 MER5A 189 + 94 187 175452 93 chain 120029 chr2 243199373 + 39471233 39472660 LTR12C 1709 + 0 1709 31048 650 0 278 184 1 0 5 3 1 102 4 8 143 0 2 144 0 1 191 chain 21912 chr2 243199373 + 39480293 39480560 AluSc 308 - 31 296 120579 102 2 0 163 chain 26323 chr2 243199373 + 39515911 39516219 AluYk4 311 + 0 308 98729 308 chain 7849 chr2 243199373 + 39547484 39547602 MER85 139 - 0 131 172005 29 0 11 60 6 8 23 chain 72256 chr2 243199373 + 39548298 39549268 LTR5_Hs 974 + 0 974 47352 86 0 2 33 13 9 39 1 0 119 0 1 178 0 1 188 1 0 15 6 5 143 8 15 19 20 18 30 0 2 71 chain 13175 chr2 243199373 + 39553609 39553781 THE1D-int 1627 + 1443 1610 147569 49 6 1 117 chain 3536 chr2 243199373 + 39573179 39573226 Charlie1a 1436 + 1312 1363 214775 9 0 4 38 chain 5246 chr2 243199373 + 39574339 39574447 Charlie1a 1436 + 1309 1415 192568 54 8 7 13 15 14 18 chain 6020 chr2 243199373 + 39585959 39586045 THE1C 375 - 258 345 185053 34 5 6 47 chain 29295 chr2 243199373 + 39592039 39592561 MER4D1 891 - 351 890 87602 12 0 1 40 19 38 11 0 2 6 1 0 20 1 0 12 24 23 60 1 2 105 4 5 76 0 1 5 21 14 53 18 20 33 chain 30103 chr2 243199373 + 39592571 39592884 AluYb8 318 - 5 318 84481 313 chain 5864 chr2 243199373 + 39620689 39620758 U6 107 - 37 106 186551 69 chain 22190 chr2 243199373 + 39669991 39670361 THE1C 375 + 0 375 119398 107 18 38 8 17 0 26 26 27 67 0 1 101 chain 6484 chr2 243199373 + 39674756 39674829 Tigger3b 1229 + 777 850 181369 73 chain 43244 chr2 243199373 + 39695333 39695880 MER41A 554 + 13 554 65124 154 0 1 171 21 0 17 0 14 184 chain 20251 chr2 243199373 + 39707924 39708217 AluSp 311 - 15 310 126375 14 7 8 121 2 5 6 3 0 28 1 3 102 1 0 8 chain 3721 chr2 243199373 + 39721117 39721177 L1MA9 1812 - 75 132 211618 13 2 0 18 2 1 25 chain 77165 chr2 243199373 + 39724970 39725844 L1PA5 6144 + 5262 6140 44876 28 0 4 846 chain 8052 chr2 243199373 + 39783056 39783165 MER30 238 + 128 231 170741 10 3 0 53 4 1 39 chain 2850 chr2 243199373 + 39784708 39784756 MLT2B4 540 - 0 50 227860 32 3 5 13 chain 49578 chr2 243199373 + 39799535 39800167 MER41B 635 - 10 635 59339 455 8 0 43 0 1 126 chain 536493 chr2 243199373 + 39802165 39808292 L1PA5 6144 - 5 6141 3376 142 1 0 696 0 4 326 1 0 975 3 6 827 1 0 782 0 4 64 2 0 214 1 4 283 0 1 102 1 0 1706 chain 116086 chr2 243199373 + 39812323 39813702 LTR12C 1709 + 0 1709 32422 276 0 11 505 1 319 6 2 0 107 0 4 316 1 0 165 chain 35530 chr2 243199373 + 39816703 39817109 L1PA3long 6157 - 0 407 75505 334 1 2 71 chain 19024 chr2 243199373 + 39834289 39834557 AluSc 308 + 41 304 130052 51 4 0 48 4 1 6 0 3 104 5 4 46 chain 2765 chr2 243199373 + 39844880 39844909 MLT1K 546 + 401 430 229237 29 chain 154771 chr2 243199373 + 39854675 39856380 SVA_D 2077 - 11 2077 24007 629 0 49 175 0 310 107 0 1 770 5 6 19 chain 25526 chr2 243199373 + 39864091 39864385 AluSc5 308 - 10 304 102114 294 chain 25400 chr2 243199373 + 39870363 39870776 MER1A 529 + 0 495 102687 59 34 76 15 0 11 14 1 0 86 3 0 100 0 27 55 25 31 21 chain 14550 chr2 243199373 + 39877955 39878225 L1PA8 5853 - 0 259 142728 93 1 0 6 11 10 50 1 0 4 22 20 26 4 1 23 0 1 11 2 0 7 2 0 7 chain 119241 chr2 243199373 + 39878827 39880164 L1PA4 6152 - 0 1340 31316 6 0 5 243 1 0 607 1 0 479 chain 53775 chr2 243199373 + 39882057 39882765 L1PA8 5853 + 4160 4871 56486 30 1 3 29 1 2 9 0 1 4 1 0 100 1 0 396 0 1 136 chain 23032 chr2 243199373 + 39901346 39901784 L1PB1 5432 + 5000 5413 115484 81 0 2 24 7 10 17 1 0 13 10 7 5 2 0 8 2 0 51 2 1 17 1 0 45 1 0 20 19 7 19 29 24 19 1 0 21 1 0 22 chain 8165 chr2 243199373 + 39916736 39916851 L1MB3 1562 + 1437 1552 170140 19 0 1 11 1 0 84 chain 29381 chr2 243199373 + 39935549 39935856 AluYg6 310 - 3 310 87165 307 chain 61429 chr2 243199373 + 39954712 39955443 L1PA6 6164 - 3 741 52139 201 14 0 7 3 21 425 0 3 81 chain 11744 chr2 243199373 + 39977409 39977592 L1PA11 4918 - 416 593 153282 14 1 0 14 2 0 64 25 22 63 chain 37694 chr2 243199373 + 40018629 40019119 LTR12F 595 - 33 595 72562 197 0 1 149 0 42 23 5 21 20 5 18 91 chain 26568 chr2 243199373 + 40022642 40023048 MSTA 426 - 0 426 97767 216 22 16 13 33 58 19 0 1 103 chain 90318 chr2 243199373 + 40024727 40025766 L1PA6 6164 - 2 1041 39530 1039 chain 515528 chr2 243199373 + 40034848 40041277 L1PA7 6471 - 10 6471 5616 840 1 0 147 0 5 128 0 1 761 0 1 7 2 1 338 0 1 32 9 11 185 0 1 173 2 1 90 0 1 189 0 1 61 3 2 841 0 3 468 5 4 180 0 15 477 0 3 6 14 15 115 0 1 76 9 8 55 1 5 122 5 6 197 1 0 93 0 1 76 22 20 289 1 0 408 chain 4983 chr2 243199373 + 40042542 40042608 L1PA15 4387 - 3919 4016 195333 11 0 31 55 chain 524371 chr2 243199373 + 40052132 40058574 L1PA7 6471 - 6 6471 4734 6 3 0 150 1 2 176 1 0 951 0 18 527 0 1 26 0 2 382 1 0 298 8 1 416 9 6 315 0 1 87 0 4 576 0 2 218 0 1 160 1 2 430 0 1 577 0 1 51 0 1 553 6 4 4 0 1 28 0 8 361 3 0 117 chain 16860 chr2 243199373 + 40072181 40072497 THE1C 375 + 0 335 135941 13 2 0 34 0 6 17 15 16 93 57 70 40 0 1 45 chain 118175 chr2 243199373 + 40090342 40091873 THE1B-int 1605 + 0 1605 31740 13 1 3 414 1 26 39 24 24 26 0 1 43 1 0 306 3 0 61 1 2 142 8 57 448 chain 24278 chr2 243199373 + 40091873 40092232 THE1B 368 + 0 368 108788 144 0 1 23 3 1 29 35 45 125 chain 94543 chr2 243199373 + 40104205 40105342 L1PA8A 6298 - 1304 2470 38110 138 0 5 26 0 1 147 1 0 705 3 27 117 chain 102824 chr2 243199373 + 40105342 40106641 L1PA8A 6298 + 4997 6290 36048 121 6 7 169 0 2 414 2 0 358 8 1 88 1 0 17 20 20 7 0 1 88 chain 20225 chr2 243199373 + 40127401 40127786 THE1D 372 + 2 360 126451 154 51 59 6 2 0 53 51 18 68 chain 15346 chr2 243199373 + 40144508 40144881 THE1D 372 + 0 372 140353 52 84 80 34 69 73 16 1 0 117 chain 425912 chr2 243199373 + 40185618 40191494 HERVL-int 5654 - 0 5654 9397 73 0 3 119 0 4 300 1 0 44 5 6 98 0 4 13 0 2 6 0 3 214 7 13 498 1 0 649 0 1 57 0 13 122 0 1 53 0 3 90 0 3 140 0 12 159 1 0 279 0 3 7 1 2 283 66 69 226 28 26 127 0 1 40 1 0 162 0 2 421 2 0 156 5 9 132 6 1 341 5 7 213 0 2 34 7 10 192 4 7 68 289 0 131 chain 177911 chr2 243199373 + 40199319 40201331 L1PA4 6152 - 1 2018 21172 274 0 1 568 0 4 1170 chain 80631 chr2 243199373 + 40201331 40202232 L1PA4 6152 + 3219 4123 43331 31 0 3 870 chain 180802 chr2 243199373 + 40210252 40212281 L1PA3long 6157 - 4 2038 20892 392 0 3 960 0 2 677 chain 311816 chr2 243199373 + 40212281 40215784 L1PA3long 6157 + 616 4112 12930 95 7 0 145 3 0 170 1 0 798 0 1 949 0 2 1115 1 2 219 chain 546074 chr2 243199373 + 40235740 40241759 L1PA2 6032 - 9 6032 1935 58 6 0 774 0 1 4 1 0 80 0 1 4 1 0 1375 0 1 671 0 11 2372 1 0 360 1 0 311 chain 9643 chr2 243199373 + 40251413 40251535 L1P1 4361 - 3146 3268 162384 122 chain 304278 chr2 243199373 + 40251535 40255080 L1PA5 6144 + 2550 6131 13227 557 15 12 90 1 4 32 0 9 391 32 31 802 0 2 146 1 2 169 0 5 495 1 5 382 0 2 158 0 10 99 0 4 174 chain 14521 chr2 243199373 + 40283873 40284035 L1PA5 6144 + 5134 5297 142822 96 0 1 66 chain 45702 chr2 243199373 + 40284035 40284545 L1PA5 6144 + 5301 5811 62311 510 chain 28080 chr2 243199373 + 40284547 40284870 L1PA5 6144 + 5812 6135 92708 323 chain 210683 chr2 243199373 + 40295179 40298106 L1PA13 3608 - 140 3050 18458 18 10 6 48 2 0 40 3 0 21 1 0 60 8 6 40 5 10 59 1 0 31 2 0 166 11 13 52 0 1 224 0 1 227 56 37 377 18 21 12 0 5 26 1 5 12 2 1 43 1 0 5 1 2 193 15 17 608 4 5 106 7 4 84 5 4 247 2 0 73 chain 167473 chr2 243199373 + 40301801 40303860 L1PA7 6471 - 6 2420 22341 157 0 1 109 30 371 205 2 1 17 1 5 554 0 4 522 0 6 15 0 1 15 1 0 431 chain 25177 chr2 243199373 + 40343456 40343745 L1PA2 6032 - 4 294 103860 146 2 3 141 chain 15574 chr2 243199373 + 40348117 40348308 MER107 203 - 0 194 139660 24 0 3 167 chain 29852 chr2 243199373 + 40442495 40442811 AluYb8 318 + 0 316 85271 316 chain 109209 chr2 243199373 + 40443195 40444562 L1PA8A 6298 - 7 1391 34393 140 1 0 144 0 1 92 0 2 374 0 1 44 1 4 229 0 10 337 0 1 5 chain 218380 chr2 243199373 + 40448026 40450653 L1PA7 6471 + 3819 6457 17978 10 1 0 174 5 0 559 7 15 204 0 5 319 10 4 398 0 3 28 0 1 82 0 3 40 5 6 372 0 2 413 chain 548512 chr2 243199373 + 40459740 40465767 L1PA2 6032 - 0 6028 1640 14 0 1 136 0 2 566 0 3 695 2 0 1010 0 1 2010 4 0 1338 1 0 71 0 1 180 chain 132568 chr2 243199373 + 40490476 40491988 L1PA4 6152 + 4623 6140 27507 294 10 1 88 0 13 987 1 2 132 chain 10068 chr2 243199373 + 40528597 40528769 L1PB1 5432 + 5170 5327 160231 50 2 1 16 2 1 43 1 0 15 4 1 14 9 0 16 chain 28146 chr2 243199373 + 40529341 40530015 L1PB1 5432 - 105 592 92472 22 21 9 15 1 0 43 2 1 16 2 1 50 6 4 7 2 0 3 2 0 9 1 0 9 1 0 24 207 41 195 2 4 34 chain 3889 chr2 243199373 + 40530015 40530058 L1PB1 5432 + 4749 4792 207698 43 chain 28168 chr2 243199373 + 40548610 40548973 THE1C 375 - 0 366 92406 25 1 0 197 7 11 133 chain 26278 chr2 243199373 + 40572793 40573151 L1PA8 5853 + 5503 5853 98909 61 1 0 44 2 0 76 1 0 7 1 0 47 6 5 12 7 6 73 1 0 19 chain 5247 chr2 243199373 + 40584774 40584840 L1PA7 6471 + 6403 6466 192544 56 3 0 7 chain 34386 chr2 243199373 + 40608767 40609231 LOR1a 498 + 15 485 77085 168 0 2 106 12 13 28 1 3 64 0 1 71 0 1 4 1 0 9 chain 38017 chr2 243199373 + 40626942 40627403 LTR2 463 + 0 462 72106 362 12 13 87 chain 12724 chr2 243199373 + 40640052 40640194 L1PA4 6152 - 9 151 149354 142 chain 37381 chr2 243199373 + 40640208 40640618 L1PA4 6152 + 5457 5866 72987 361 1 0 48 chain 15206 chr2 243199373 + 40669184 40669349 L1PA3long 6157 + 5992 6157 140764 165 chain 72548 chr2 243199373 + 40669419 40670410 L1PA8 5853 + 4875 5853 47243 69 1 0 43 0 4 20 7 3 19 5 0 531 1 0 46 3 1 67 13 11 54 1 0 17 2 1 92 chain 58729 chr2 243199373 + 40718307 40718957 L1PA3long 6157 - 1683 2338 53397 472 1 6 177 chain 150945 chr2 243199373 + 40718957 40720645 L1PA3long 6157 + 4468 6157 24486 100 0 1 1439 1 0 141 0 1 7 chain 5236 chr2 243199373 + 40721723 40721780 L1PA5 6144 + 6074 6131 192660 57 chain 27189 chr2 243199373 + 40723935 40724224 L1PA2 6032 + 5740 6029 95632 289 chain 75547 chr2 243199373 + 40730565 40731785 L1MA1 4479 + 3010 4180 45746 112 9 10 25 2 0 9 1 2 7 4 0 72 1 0 4 1 0 12 3 0 48 5 0 78 18 15 115 3 1 56 0 1 138 1 0 9 5 1 10 1 0 20 1 0 71 1 0 5 31 28 88 1 0 5 3 0 126 1 0 10 1 0 19 2 0 35 1 0 9 1 0 5 7 5 11 9 0 8 chain 39258 chr2 243199373 + 40756009 40756493 L1PA7 6471 - 467 950 70381 46 0 1 17 1 0 319 1 0 100 chain 36006 chr2 243199373 + 40756509 40756944 L1PA7 6471 + 6036 6470 74888 430 1 0 4 chain 23488 chr2 243199373 + 40773216 40773505 AluSp 311 + 3 293 113181 245 0 1 44 chain 12339 chr2 243199373 + 40790853 40790997 L1PA5 6144 - 3 147 150863 144 chain 12128 chr2 243199373 + 40790999 40791132 L1PA5 6144 + 5831 5964 151699 133 chain 7574 chr2 243199373 + 40886687 40886785 L1PA16 3655 + 3406 3504 173702 98 chain 324881 chr2 243199373 + 40899715 40903755 HERV9-int 5642 + 5 4825 12395 69 1 0 321 1 0 202 9 8 108 0 4 78 1 0 232 0 1 75 161 0 8 1 0 232 1 0 122 0 12 127 5 0 1406 7 942 361 0 2 6 2 0 504 chain 6218 chr2 243199373 + 40900896 40900970 HERV9-int 5642 + 1027 1101 183428 74 chain 38959 chr2 243199373 + 40904965 40905506 LTR12_ 688 + 0 673 70790 16 9 8 66 26 1 52 0 24 44 3 4 244 0 133 81 chain 58623 chr2 243199373 + 40908264 40908991 L1PA7 6471 - 4 724 53627 6 5 0 248 1 0 74 5 4 388 chain 243495 chr2 243199373 + 40909024 40912081 L1PA7 6471 + 2639 5714 16590 55 0 1 10 0 3 113 0 1 195 22 25 6 1 0 455 1 0 103 0 1 222 1 0 359 7 8 127 3 0 58 0 2 424 2 7 94 4 5 326 0 1 233 0 5 140 4 3 17 1 0 62 0 2 12 chain 217433 chr2 243199373 + 40919219 40921680 L1PA4 6152 + 3671 6143 18033 964 1 0 424 0 3 976 0 1 38 0 8 58 chain 34298 chr2 243199373 + 40922598 40923040 L1PA7 6471 - 4 446 77214 260 5 9 27 4 0 146 chain 8820 chr2 243199373 + 40929684 40929889 L1PB1 5432 + 5238 5422 166553 43 1 0 15 2 0 6 64 49 19 1 0 21 1 0 13 1 0 18 chain 419615 chr2 243199373 + 40934653 40940550 L1PA7 6471 - 14 6468 9539 261 0 1 56 0 3 348 8 9 170 1 2 10 1 0 86 8 10 109 0 2 45 1 2 109 1 3 170 14 372 9 0 4 37 1 2 27 0 1 70 0 8 219 5 3 5 0 2 297 2 0 11 5 1 35 4 0 14 7 8 26 0 1 281 333 11 114 0 1 260 0 5 133 1 11 60 3 497 275 1 0 19 0 12 77 0 1 83 6 7 74 0 1 90 0 3 234 0 1 173 0 1 463 0 1 82 0 7 11 33 20 48 7 5 434 0 1 7 19 0 142 27 26 235 chain 29425 chr2 243199373 + 40978148 40978469 AluYb8 318 - 0 318 86964 192 3 0 126 chain 19304 chr2 243199373 + 40985302 40985544 L1PA7 6471 + 6204 6449 129227 33 0 4 16 1 0 192 chain 26459 chr2 243199373 + 40993194 40993522 MER83 447 + 45 397 98209 66 0 24 262 chain 189969 chr2 243199373 + 41008127 41010248 L1PA3long 6157 + 4032 6157 20049 793 0 1 72 0 1 659 0 1 590 0 1 7 chain 19689 chr2 243199373 + 41028888 41029106 L1PA4 6152 - 701 919 128133 218 chain 63660 chr2 243199373 + 41029108 41029837 L1PA4 6152 + 5418 6151 51165 6 0 1 266 0 2 252 1 2 204 chain 271864 chr2 243199373 + 41081069 41084320 L1PA6 6164 + 2895 6156 15091 270 0 1 11 0 1 4 2 3 4 0 1 34 0 8 354 0 15 101 1 2 196 11 6 413 7 6 709 0 8 272 0 1 87 1 2 610 22 1 132 1 0 9 chain 9200 chr2 243199373 + 41089475 41089598 MER85 139 - 1 135 164553 27 4 15 92 chain 6862 chr2 243199373 + 41093155 41093260 L1PA7 6471 + 6351 6464 178482 29 10 18 66 chain 24533 chr2 243199373 + 41114285 41114582 AluYk4 311 - 16 311 107360 14 2 0 281 chain 9270 chr2 243199373 + 41136310 41136412 L1PA2 6032 - 1 103 164220 102 chain 26148 chr2 243199373 + 41151628 41151917 L1PA3long 6157 - 579 868 99413 289 chain 52726 chr2 243199373 + 41151917 41152496 L1PA3long 6157 + 5578 6157 57173 579 chain 79887 chr2 243199373 + 41168390 41169475 MER11A 1151 + 0 1151 43646 66 1 100 126 3 0 3 1 0 93 0 1 19 0 1 34 0 1 85 6 0 11 0 7 137 4 6 81 7 8 60 4 6 15 43 0 34 7 8 205 0 4 40 chain 4055 chr2 243199373 + 41184475 41184523 MSTA 426 - 23 71 206549 48 chain 62284 chr2 243199373 + 41193917 41194654 L1PA7 6471 + 5728 6467 51760 27 0 4 585 3 1 122 chain 16925 chr2 243199373 + 41199320 41199579 MER30 238 - 0 238 135783 116 5 0 22 18 0 34 7 9 57 chain 19766 chr2 243199373 + 41218234 41218463 L1PA7 6471 + 6228 6470 127918 163 0 13 66 chain 61312 chr2 243199373 + 41243600 41244588 L1PA11 4918 - 289 1232 52200 18 47 33 11 2 0 13 1 0 15 81 65 67 2 0 13 2 1 62 5 0 204 5 6 21 1 0 71 3 0 213 2 0 125 0 1 4 chain 5105 chr2 243199373 + 41252860 41252917 L1MA5A 2387 + 2239 2296 194040 57 chain 42266 chr2 243199373 + 41270125 41270746 L1PA13 3608 - 128 737 66311 12 1 0 20 8 5 20 0 1 26 7 4 58 1 0 61 2 0 23 12 10 81 1 0 28 2 1 132 0 1 126 chain 184799 chr2 243199373 + 41281463 41283588 L1PA6 6164 - 2 2134 20515 329 0 1 510 0 4 76 0 1 350 0 1 860 chain 224737 chr2 243199373 + 41283588 41286290 L1PA6 6164 + 1362 4058 17617 319 1 0 213 0 1 283 11 4 4 0 1 850 0 1 63 0 1 87 0 1 33 1 0 480 3 0 188 4 5 162 chain 121629 chr2 243199373 + 41308713 41310152 L1PA4 6152 + 4707 6152 30502 516 0 1 772 20 20 125 0 5 6 chain 147287 chr2 243199373 + 41315527 41317185 L1PA3long 6157 - 2 1670 24998 406 0 5 81 4 5 112 0 3 524 0 1 531 chain 200072 chr2 243199373 + 41319827 41322304 L1PA7 6471 + 3991 6466 19206 34 0 1 459 2 1 463 1 0 130 0 1 4 1 0 537 1 0 79 2 3 559 9 14 183 6 0 7 chain 88577 chr2 243199373 + 41340574 41341633 MER11C 1089 - 15 1089 40157 9 1 2 325 0 1 45 0 4 433 0 9 246 chain 17389 chr2 243199373 + 41382110 41382308 L1PA4 6152 - 9 206 134541 4 1 0 193 chain 8932 chr2 243199373 + 41382308 41382409 L1PA4 6152 + 5852 5953 165966 101 chain 28946 chr2 243199373 + 41385024 41385329 AluYa5 310 - 5 310 89239 305 chain 115623 chr2 243199373 + 41441924 41443549 L1PB2 3958 - 128 1728 32580 55 2 1 25 6 4 63 1 0 65 1 0 49 18 23 93 3 1 11 3 1 78 15 14 33 7 5 69 1 2 128 0 1 185 1 0 270 20 0 16 0 3 123 6 7 24 3 0 251 chain 22702 chr2 243199373 + 41448683 41448962 L1PA10 4194 + 1024 1301 117066 206 2 0 71 chain 8648 chr2 243199373 + 41451129 41451307 L1P3b 214 - 53 212 167482 15 6 10 75 31 13 16 10 5 25 chain 178927 chr2 243199373 + 41451308 41453612 L1PA8A 6298 + 4001 6291 21078 143 8 7 353 0 1 174 0 1 242 0 5 362 3 4 196 2 1 83 1 0 7 0 1 71 2 4 111 15 5 70 0 1 164 0 1 32 15 0 142 11 12 97 chain 18949 chr2 243199373 + 41463789 41464096 THE1B 368 - 62 368 130229 57 8 7 13 6 5 10 0 1 4 1 0 4 0 7 29 1 0 18 1 0 32 12 8 111 chain 10142 chr2 243199373 + 41466543 41466675 L1PA8 5853 - 0 130 159885 93 1 0 19 2 1 17 chain 3499 chr2 243199373 + 41467885 41467931 L1M4c 1769 - 1076 1131 215363 31 0 9 15 chain 81314 chr2 243199373 + 41500459 41501384 L1P1 4361 - 20 942 43036 12 2 1 23 1 0 155 1 0 731 chain 92656 chr2 243199373 + 41501384 41502447 L1PA4 6152 + 5084 6151 38770 954 0 1 5 9 12 95 chain 27760 chr2 243199373 + 41515280 41515636 THE1B 368 - 0 368 93836 75 1 0 125 2 0 109 0 15 44 chain 26254 chr2 243199373 + 41540622 41540919 AluYc 301 - 1 301 99006 225 0 3 72 chain 3284 chr2 243199373 + 41552617 41552652 L1PA4 6152 + 6106 6141 219280 35 chain 6146 chr2 243199373 + 41555176 41555243 L1PA4 6152 - 0 67 184026 67 chain 110609 chr2 243199373 + 41562547 41563835 LTR12C 1709 + 0 1709 34050 799 3 319 106 0 4 212 0 101 168 chain 46375 chr2 243199373 + 41569187 41569800 L1PA8 5853 + 5247 5844 61703 265 11 0 50 1 0 47 2 0 69 2 1 8 2 1 11 1 2 43 1 0 16 2 1 77 0 1 5 chain 331042 chr2 243199373 + 41585617 41589406 L1P1 4361 + 1 3799 12163 484 17 13 740 1 0 323 3 15 261 0 1 289 0 1 1671 chain 46028 chr2 243199373 + 41589411 41589926 L1PA4 6152 + 5636 6151 62017 515 chain 3991 chr2 243199373 + 41597131 41597177 THE1C-int 1605 - 1281 1327 207521 46 chain 29756 chr2 243199373 + 41604972 41605403 LTR7C 471 + 0 471 85627 21 0 23 25 11 30 67 0 3 32 6 2 204 1 0 26 4 6 7 2 0 25 chain 20341 chr2 243199373 + 41622673 41622998 THE1D 372 - 38 372 126101 76 26 27 35 2 0 5 14 22 5 0 2 162 chain 53649 chr2 243199373 + 41650014 41650707 L1PB1 5432 - 639 1344 56584 85 3 4 79 0 4 6 5 9 60 1 0 19 0 4 88 1 2 4 1 0 341 chain 37489 chr2 243199373 + 41650707 41651372 L1PB1 5432 + 4787 5427 72825 20 0 8 105 1 2 118 1 0 4 0 1 49 13 14 7 3 0 23 1 0 9 1 0 9 2 0 3 2 0 9 2 0 51 1 0 17 1 0 45 42 30 4 1 0 5 0 1 6 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 13 1 0 6 1 0 4 chain 49654 chr2 243199373 + 41660144 41660689 L1PA3long 6157 - 0 544 59271 5 2 0 243 0 1 295 chain 5235 chr2 243199373 + 41699214 41699280 THE1D-int 1627 + 1557 1622 192682 6 1 0 59 chain 19149 chr2 243199373 + 41699285 41699654 THE1D 372 + 0 360 129684 8 6 0 136 104 102 95 1 0 19 chain 12168 chr2 243199373 + 41737805 41738161 LOR1b 457 - 7 363 87237 195 0 2 5 8 0 7 6 14 79 2 0 54 chain 218199 chr2 243199373 + 41738179 41744080 L1PA3long 6157 - 0 3854 17990 415 3393 1346 2093 chain 2393 chr2 243199373 + 41738594 41738664 LOR1b 457 - 378 457 87237 33 0 9 37 chain 158087 chr2 243199373 + 41744080 41745827 L1PA3long 6157 + 4409 6157 23580 521 1 0 1050 0 2 175 chain 22539 chr2 243199373 + 41770152 41770452 AluY 311 + 5 298 117851 59 3 0 69 4 1 139 9 8 17 chain 182559 chr2 243199373 + 41777149 41779108 L1HS 6032 - 0 1959 20731 1959 chain 162750 chr2 243199373 + 41779108 41780846 L1HS 6032 + 2340 4078 22929 1738 chain 193241 chr2 243199373 + 41783126 41785651 L1PBa 3878 + 1093 3666 19752 285 0 4 78 0 4 16 6 7 126 14 17 229 1 3 67 0 9 539 0 3 43 0 6 178 0 10 17 1 2 42 0 1 19 0 1 9 0 8 68 0 1 170 0 2 152 1 0 4 0 1 8 4 0 196 2 0 37 1 0 143 1 0 68 chain 37125 chr2 243199373 + 41812884 41813380 L1PA10 4194 + 3667 4161 73343 76 0 1 298 5 6 60 12 9 33 2 1 10 chain 181755 chr2 243199373 + 41829922 41832013 L1PA5 6144 - 9 2108 20812 141 7 0 693 0 4 541 0 12 530 1 0 178 chain 33987 chr2 243199373 + 41850875 41851356 MER75 514 + 33 514 77633 73 30 19 113 2 3 256 0 10 7 chain 42596 chr2 243199373 + 41854984 41855531 MLT2A2 560 + 0 548 65905 291 7 0 8 1 9 240 chain 150944 chr2 243199373 + 41864752 41867300 L1PA10 4194 + 223 2431 24487 9 2 0 8 6 5 5 1 0 22 2 0 15 45 19 8 1 0 21 2 0 16 7 12 7 1 0 10 1 0 14 4 0 8 20 18 64 2 0 205 6 5 192 34 33 163 323 8 385 0 1 4 0 1 4 5 4 90 1 14 9 0 3 13 0 5 136 8 0 194 2 0 155 8 9 109 5 9 196 chain 52383 chr2 243199373 + 41868175 41868767 L1PA4 6152 + 5558 6150 57369 592 chain 5712 chr2 243199373 + 41882376 41882498 L1PB1 5432 - 10 124 187997 18 1 0 12 2 1 21 1 0 17 9 7 14 1 0 5 3 1 18 chain 11287 chr2 243199373 + 41892716 41892864 MSTD 398 - 184 330 155095 36 1 0 11 2 1 98 chain 31238 chr2 243199373 + 41966548 41966920 L1P1 4361 - 20 389 81803 12 2 1 23 1 0 155 1 0 178 chain 109894 chr2 243199373 + 41966920 41968213 L1PA4 6152 + 4861 6135 34240 51 28 6 116 1 0 272 0 4 431 1 0 292 0 1 101 chain 17230 chr2 243199373 + 41970917 41971152 L1PB3 3668 + 2513 2747 134978 108 4 3 6 0 1 36 1 0 80 chain 166364 chr2 243199373 + 41973256 41975856 SVA_F 1814 + 10 1814 22478 871 1 0 10 351 0 56 0 15 39 459 0 10 1 0 116 0 1 686 chain 20204 chr2 243199373 + 41974144 41974489 SVA_F 1814 + 898 1131 80506 38 0 1 10 127 15 39 1 0 130 chain 10142 chr2 243199373 + 41974192 41974319 SVA_F 1814 + 962 1089 117934 31 13 13 83 chain 2486 chr2 243199373 + 41974585 41974622 SVA_F 1814 + 1001 1037 138191 10 1 0 26 chain 4217 chr2 243199373 + 41974622 41974694 SVA_F 1814 + 1213 1284 80506 61 1 0 10 chain 6786 chr2 243199373 + 41974723 41974824 SVA_F 1814 + 1089 1187 138191 39 1 0 10 1 0 39 1 0 10 chain 6770 chr2 243199373 + 41974825 41974905 SVA_F 1814 + 1011 1091 138873 80 chain 7488 chr2 243199373 + 41974954 41975042 SVA_F 1814 + 1091 1177 168715 37 1 0 10 1 0 39 chain 4698 chr2 243199373 + 41984778 41984833 MER1B 344 - 0 55 198557 55 chain 3684 chr2 243199373 + 41986074 41986126 THE1B 368 - 289 356 212174 14 0 9 6 0 6 32 chain 17368 chr2 243199373 + 41998532 41998738 L1PA5 6144 + 5912 6132 134599 59 0 12 17 0 2 130 chain 41872 chr2 243199373 + 42014294 42014828 L1PA4 6152 + 5673 6152 66801 183 52 1 289 4 0 6 chain 3669 chr2 243199373 + 42021661 42021705 U6 107 + 0 44 212418 44 chain 66256 chr2 243199373 + 42031998 42032923 L1PA11 4918 + 3652 4567 49977 532 3 8 121 0 4 7 1 0 10 1 0 48 10 12 9 2 0 71 2 0 13 2 1 20 4 0 9 8 3 10 13 9 15 1 0 13 chain 2911 chr2 243199373 + 42035172 42035204 L1MA2 4263 + 4067 4099 226846 32 chain 26372 chr2 243199373 + 42072018 42072568 MLT2A1 477 + 0 477 98528 15 13 6 96 6 5 18 1 2 25 2 6 24 11 13 96 5 0 18 1 0 56 122 56 41 chain 21535 chr2 243199373 + 42085805 42086261 THE1D 372 - 12 372 122023 20 1 0 94 110 8 44 23 27 89 20 21 39 1 3 15 chain 26954 chr2 243199373 + 42093543 42093897 THE1A 353 - 0 353 96433 243 6 5 105 chain 4048 chr2 243199373 + 42107871 42107937 MER53 195 + 1 68 206666 41 5 6 20 chain 24009 chr2 243199373 + 42141586 42141934 THE1D 372 + 0 372 110276 122 1 11 35 0 4 6 10 15 27 8 14 102 2 1 35 chain 9486 chr2 243199373 + 42142813 42142932 MER5A1 166 + 46 165 163135 119 chain 25912 chr2 243199373 + 42152620 42152989 THE1C 375 - 0 375 100363 63 6 7 26 0 1 84 2 1 6 0 1 45 7 11 130 chain 33957 chr2 243199373 + 42155285 42155730 MER4A1 472 - 0 472 77684 72 0 2 19 0 1 146 0 16 75 1 0 94 0 7 9 1 0 9 0 1 4 0 2 15 chain 3151 chr2 243199373 + 42157564 42157605 MER5B 177 - 112 153 221907 41 chain 32899 chr2 243199373 + 42162508 42162950 L1PA8 5853 - 0 442 79369 36 2 3 54 1 0 58 0 4 18 2 1 68 3 1 46 1 0 153 chain 4068 chr2 243199373 + 42196223 42196273 MIR 256 - 84 134 206333 50 chain 102581 chr2 243199373 + 42222143 42223321 SVA_D 2077 + 18 2064 36112 13 29 1 428 0 156 111 0 741 294 1 0 302 chain 3913 chr2 243199373 + 42231727 42231777 MLT1A0 366 - 306 357 208655 36 0 1 14 chain 163453 chr2 243199373 + 42240871 42242785 SVA_D 2077 - 0 2064 22884 640 0 49 203 22 50 4 0 1 92 2 4 48 1 0 11 1 39 14 7 6 8 2 0 148 3 0 32 0 3 38 8 44 630 chain 65457 chr2 243199373 + 42243862 42244956 L1PA7 6471 + 5689 6470 50354 81 8 2 26 303 0 216 1 0 283 2 0 169 1 0 4 chain 4318 chr2 243199373 + 42248304 42248376 MIR 256 + 64 135 202986 5 1 0 47 1 2 4 1 0 13 chain 4419 chr2 243199373 + 42260846 42260901 MER41B 635 - 66 121 201702 55 chain 113438 chr2 243199373 + 42292768 42294040 L1PA5 6144 - 7 1280 33241 265 0 1 602 1 0 149 0 1 255 chain 10022 chr2 243199373 + 42314960 42315159 MER57D 437 - 0 205 160476 108 65 71 26 chain 3422 chr2 243199373 + 42331039 42331078 MER39 703 + 493 532 216729 39 chain 3939 chr2 243199373 + 42335934 42336018 L2a 937 + 304 383 208281 34 28 23 22 chain 20425 chr2 243199373 + 42370900 42371180 AluSg7 307 - 7 296 125828 25 3 9 42 16 18 74 0 1 120 chain 3978 chr2 243199373 + 42374569 42374617 MIR 256 - 201 249 207706 48 chain 23575 chr2 243199373 + 42385700 42385980 AluY 311 + 16 302 112709 110 0 1 145 0 5 25 chain 14845 chr2 243199373 + 42409298 42409458 L1PA2 6032 - 1 161 141792 160 chain 7090 chr2 243199373 + 42409864 42410098 MLT1B 390 - 28 251 176832 58 130 119 46 chain 16052 chr2 243199373 + 42411378 42411552 L1PA4 6152 - 3 177 138209 174 chain 11188 chr2 243199373 + 42420286 42420467 Tigger3a 397 + 180 366 155481 134 34 39 13 chain 4122 chr2 243199373 + 42437787 42437892 L1MC3 1789 - 414 506 205621 36 27 17 14 8 5 20 chain 22422 chr2 243199373 + 42520765 42521048 AluSg7 307 - 23 307 118367 123 11 12 149 chain 9772 chr2 243199373 + 42540395 42540580 MER4B 649 + 452 640 161735 17 1 0 7 1 0 7 0 7 7 7 0 25 0 1 4 1 0 23 15 20 9 0 1 53 1 0 7 chain 29299 chr2 243199373 + 42618735 42619041 AluYa5 310 - 4 310 87581 306 chain 27913 chr2 243199373 + 42621648 42622033 MER4A1 472 + 0 472 93312 71 0 16 70 0 41 22 0 1 4 6 27 132 11 19 69 chain 4807 chr2 243199373 + 42679251 42679352 L1MA3 4352 - 0 94 197267 21 3 0 3 1 0 15 6 5 20 1 0 5 2 1 24 chain 65466 chr2 243199373 + 42679810 42681106 L1MA2 4263 - 150 1099 50349 5 0 3 47 7 0 30 323 0 15 0 1 45 2 1 9 6 1 47 11 7 95 3 0 139 11 6 8 1 0 69 6 2 9 2 0 324 1 0 11 4 5 15 0 4 51 chain 15490 chr2 243199373 + 42726661 42726882 AluSp 311 + 12 236 139925 39 20 22 68 0 1 31 2 1 10 0 1 51 chain 23198 chr2 243199373 + 42727265 42727548 AluSx1 309 + 9 292 114685 283 chain 38808 chr2 243199373 + 42730137 42730688 MER41A 554 - 6 552 71007 98 19 20 29 9 5 176 7 8 119 0 1 55 4 0 35 chain 29146 chr2 243199373 + 42765898 42766213 AluYb8 318 - 3 318 88334 315 chain 8585 chr2 243199373 + 42769996 42770101 HERVL-int 5654 - 48 155 167819 99 0 2 6 chain 9322 chr2 243199373 + 42771100 42771259 MER41D 557 + 24 185 163947 68 3 4 21 23 24 44 chain 11654 chr2 243199373 + 42775002 42775143 MER57A1 433 - 290 431 153676 141 chain 24449 chr2 243199373 + 42812239 42812526 AluSp 311 - 23 310 107812 58 1 0 39 0 1 189 chain 154973 chr2 243199373 + 42831719 42834196 SVA_F 1814 - 0 1802 23983 627 1 0 10 1 0 215 580 15 49 1 0 17 1 3 13 169 0 124 0 80 73 20 0 576 chain 13756 chr2 243199373 + 42832573 42832798 SVA_F 1814 - 725 852 131954 48 1 0 20 97 0 59 chain 4496 chr2 243199373 + 42832642 42832702 SVA_F 1814 - 906 967 184037 5 0 1 4 1 0 17 0 1 33 chain 914 chr2 243199373 + 42832798 42832850 SVA_F 1814 - 867 919 148704 52 chain 6268 chr2 243199373 + 42832879 42832948 SVA_F 1814 - 708 777 147915 69 chain 16423 chr2 243199373 + 42832948 42833139 SVA_F 1814 - 650 839 137146 155 2 1 22 1 0 11 chain 5802 chr2 243199373 + 42833249 42833334 SVA_F 1814 - 723 808 139488 85 chain 879 chr2 243199373 + 42833353 42833403 SVA_F 1814 - 939 989 148704 50 chain 114353 chr2 243199373 + 42848272 42849578 SVA_C 1631 - 3 1631 32979 18 1 0 546 4 261 140 0 37 51 0 12 355 1 0 132 0 25 24 4 3 6 2 0 3 4 0 15 chain 24649 chr2 243199373 + 42904316 42904996 THE1B 368 + 2 368 106723 11 2 0 24 10 16 28 5 4 72 315 0 15 2 1 5 0 1 17 2 0 172 chain 16759 chr2 243199373 + 42933234 42933425 L1PA3long 6157 + 5965 6157 136236 16 0 1 175 chain 17335 chr2 243199373 + 42941798 42942120 MER1B 344 - 5 344 134694 50 25 26 47 7 3 34 4 5 82 1 19 25 24 25 23 chain 81020 chr2 243199373 + 42954983 42956226 L1MA3 4352 - 28 1246 43185 10 1 0 26 2 1 4 1 0 25 2 0 28 18 15 48 0 1 16 1 2 35 3 0 7 24 13 72 4 7 15 5 7 95 0 2 167 6 10 62 0 1 41 22 0 211 6 7 11 1 0 65 0 4 127 1 2 81 chain 24250 chr2 243199373 + 42958469 42958814 THE1A 353 - 0 353 108944 83 29 30 130 1 0 25 0 8 77 chain 117249 chr2 243199373 + 42958814 42960276 THE1A-int 1579 - 0 1579 32040 117 0 2 246 26 129 645 0 2 21 1 8 166 1 4 239 chain 28278 chr2 243199373 + 42960276 42960627 THE1A 353 - 0 353 92006 158 0 3 82 1 0 110 chain 10024 chr2 243199373 + 42960637 42960782 L1MA3 4352 - 3241 3386 160458 22 12 12 111 chain 6441 chr2 243199373 + 42965002 42965119 Tigger1 2417 - 0 117 181703 19 18 20 5 3 0 64 0 1 8 chain 7661 chr2 243199373 + 42974044 42974139 MER39 703 - 206 301 173154 95 chain 30611 chr2 243199373 + 43001029 43001410 MER4A1 472 + 79 461 83188 25 1 2 355 chain 23601 chr2 243199373 + 43003773 43004062 AluSg7 307 - 10 298 112585 165 1 0 123 chain 179032 chr2 243199373 + 43005306 43009698 MER4-int 2692 + 73 2692 21071 17 1 0 4 0 1 4 2 0 29 2 0 98 304 0 113 0 8 74 314 0 121 1 10 43 0 1 8 317 41 46 1 3 20 4 5 42 0 22 311 0 3 100 0 3 41 340 26 44 2 0 18 2 0 94 0 1 28 9 1 24 8 7 16 320 0 150 1 0 70 5 16 17 11 11 17 0 11 37 27 29 27 0 7 59 2 0 71 305 0 181 7 6 73 6 6 404 chain 37122 chr2 243199373 + 43009705 43010174 MER4A1 472 + 0 472 73353 15 0 2 4 0 1 11 1 0 398 0 1 40 chain 3656 chr2 243199373 + 43037675 43037713 tRNA-Ile-ATA 38 + 0 38 212666 38 chain 63521 chr2 243199373 + 43058862 43059631 LTR17 781 + 2 774 51240 107 1 2 216 1 0 106 2 5 336 chain 6806 chr2 243199373 + 43065855 43065962 MER30 238 - 0 111 178905 25 3 4 19 4 1 31 0 6 25 chain 13142 chr2 243199373 + 43070073 43070233 L1PA5 6144 - 1 159 147676 10 3 1 147 chain 5104 chr2 243199373 + 43092608 43092687 MADE1 96 + 1 96 194047 33 5 22 6 1 0 34 chain 41967 chr2 243199373 + 43100983 43101533 MER41A 554 - 0 554 66666 320 5 1 42 0 4 89 4 5 51 0 3 39 chain 3067 chr2 243199373 + 43103882 43103917 MER33 330 + 41 76 223607 35 chain 41529 chr2 243199373 + 43118758 43119280 MER41A 554 - 24 554 67246 48 11 16 35 0 1 147 0 1 189 0 1 92 chain 24084 chr2 243199373 + 43170504 43170795 AluSp 311 + 3 294 109837 291 chain 20210 chr2 243199373 + 43179312 43179654 THE1B 368 + 0 368 126501 44 13 28 97 1 0 29 35 45 44 2 1 11 0 3 66 chain 5290 chr2 243199373 + 43209673 43209776 MSTB 430 - 309 414 192116 43 30 32 30 chain 542265 chr2 243199373 + 43216616 43222632 L1PA3long 6157 + 0 6149 2461 72 0 1 66 13 14 102 0 1 512 8 136 4231 0 1 688 1 0 157 0 2 166 chain 4957 chr2 243199373 + 43228712 43228773 MER53 195 - 122 183 195609 61 chain 6771 chr2 243199373 + 43231040 43231132 MLT1B 390 + 280 374 179170 19 1 0 22 0 1 31 0 2 19 chain 12073 chr2 243199373 + 43239023 43239569 L1MB7 1623 - 95 563 151886 9 3 0 20 1 0 5 7 3 12 1 0 25 346 277 117 chain 134996 chr2 243199373 + 43289660 43291177 SVA_D 2077 - 4 2077 27015 531 0 225 136 0 79 9 0 2 25 0 223 389 0 7 392 0 19 11 4 5 20 chain 26276 chr2 243199373 + 43317826 43318176 THE1B 368 + 0 368 98918 19 0 1 24 1 16 112 6 13 10 4 0 99 1 0 74 chain 3567 chr2 243199373 + 43349999 43350047 Charlie4a 502 + 413 457 214186 29 4 0 15 chain 5455 chr2 243199373 + 43404671 43404731 MER2 342 + 156 216 190467 60 chain 4643 chr2 243199373 + 43421122 43421179 MIRc 230 - 105 162 199141 57 chain 23243 chr2 243199373 + 43423339 43423611 AluY 311 + 26 299 114471 106 0 1 166 chain 3894 chr2 243199373 + 43429738 43429783 L1MC1 2226 - 189 234 208945 45 chain 22893 chr2 243199373 + 43462447 43462719 AluSp 311 - 27 300 116135 231 0 1 41 chain 6577 chr2 243199373 + 43463822 43463899 L1MB7 1623 + 417 495 180633 25 0 1 52 chain 2272 chr2 243199373 + 43516238 43516360 L1MB7 1623 - 91 192 235758 14 52 43 23 4 1 7 8 0 8 1 0 5 chain 132018 chr2 243199373 + 43524041 43525755 SVA_F 1814 + 335 1814 27633 553 275 0 59 0 15 39 2 0 4 1 0 99 1 3 61 1 0 2 1 0 18 1 0 13 0 28 569 0 1 15 chain 11177 chr2 243199373 + 43524595 43524787 SVA_F 1814 + 888 1046 94724 25 49 0 35 3 18 80 chain 2108 chr2 243199373 + 43524641 43524667 SVA_F 1814 + 999 1024 152882 6 1 0 19 chain 2654 chr2 243199373 + 43524796 43524830 SVA_F 1814 + 815 849 188123 34 chain 1439 chr2 243199373 + 43524830 43524869 SVA_F 1814 + 898 937 143763 39 chain 16392 chr2 243199373 + 43561758 43561938 AluY 311 + 127 307 137228 180 chain 17133 chr2 243199373 + 43582256 43582516 L1MA3 4352 - 500 755 135222 27 15 8 116 16 18 86 chain 4034 chr2 243199373 + 43635454 43635499 U6 107 + 9 54 206859 45 chain 29347 chr2 243199373 + 43658985 43659294 AluYa5 310 - 1 310 87310 309 chain 7746 chr2 243199373 + 43666442 43666531 MER44A 345 + 130 219 172623 89 chain 18877 chr2 243199373 + 43674115 43674429 THE1C 375 - 1 375 130434 125 46 56 9 1 2 24 1 50 108 chain 7935 chr2 243199373 + 43677970 43678227 L1MB3 1562 + 1323 1552 171414 20 0 1 7 1 0 70 47 21 18 78 76 16 chain 119006 chr2 243199373 + 43759573 43761044 L1PA8 5853 + 3526 5853 31408 341 0 859 132 0 5 147 2 0 77 0 1 426 2 1 49 1 0 46 2 0 67 1 0 12 2 1 50 2 1 19 2 1 54 8 9 29 chain 556610 chr2 243199373 + 43770008 43776158 L1PA3long 6157 - 0 6157 658 140 7 0 668 0 1 34 0 4 25 1 0 391 1 0 51 5 3 875 0 2 449 0 1 668 0 4 635 1 0 430 0 4 207 0 2 314 0 1 1248 chain 9111 chr2 243199373 + 43816738 43816956 L1PB1 5432 + 5221 5422 165010 16 1 0 44 29 16 30 5 0 5 1 0 14 2 0 24 9 16 5 1 0 12 2 1 18 chain 110882 chr2 243199373 + 43826418 43828293 L1PB1 5432 + 3883 5424 33974 506 0 4 110 1 3 122 3 0 16 0 2 36 312 1 30 0 1 90 1 0 178 4 7 114 1 2 9 3 0 24 1 0 9 16 11 9 2 0 53 2 1 15 5 4 41 1 0 30 9 0 16 9 6 13 2 0 22 10 9 14 1 0 13 1 0 16 1 0 4 chain 24198 chr2 243199373 + 43829706 43829984 AluSp 311 - 34 311 109227 165 2 1 111 chain 14267 chr2 243199373 + 43868565 43868751 MER30 238 + 37 238 143660 71 4 19 111 chain 562762 chr2 243199373 + 43887610 43893639 L1PA2 6032 - 3 6032 278 6029 chain 134873 chr2 243199373 + 43904342 43905871 SVA_D 2077 - 4 2048 27043 628 2 0 44 9 8 4 0 1 68 0 477 188 8 48 578 chain 3411 chr2 243199373 + 43915245 43915281 L1PA16 3655 - 697 733 216916 36 chain 23737 chr2 243199373 + 43920598 43920887 AluY 311 + 16 305 111849 71 0 1 38 0 1 172 2 0 6 chain 21597 chr2 243199373 + 43936732 43936980 AluSc 308 + 38 286 121779 248 chain 22244 chr2 243199373 + 43973863 43974120 AluY 311 + 36 294 119146 96 0 1 161 chain 12514 chr2 243199373 + 44003183 44003324 L1PA6 6164 - 6 147 150185 141 chain 8224 chr2 243199373 + 44012487 44013083 L1MB3 1562 + 1253 1546 169814 53 0 1 13 318 28 4 1 0 21 29 31 13 52 26 32 38 49 22 chain 22883 chr2 243199373 + 44013684 44013992 AluY 311 + 29 310 116173 5 3 0 49 23 0 50 1 0 177 chain 25515 chr2 243199373 + 44038739 44039032 AluSc 308 - 16 308 102161 174 1 0 118 chain 9737 chr2 243199373 + 44045152 44045308 MER47A 366 - 154 289 161903 59 24 3 73 chain 8030 chr2 243199373 + 44062739 44063049 MLT1A0 366 + 30 350 170874 19 197 207 94 chain 21978 chr2 243199373 + 44076344 44076716 THE1D 372 - 0 372 120328 148 17 18 10 9 13 25 0 1 4 18 13 28 17 16 96 chain 126995 chr2 243199373 + 44093090 44094485 L1PA3long 6157 + 4752 6147 28816 1395 chain 20313 chr2 243199373 + 44146134 44146462 MER1B 344 + 27 344 126196 45 24 20 124 4 0 50 22 19 59 chain 24692 chr2 243199373 + 44196271 44196567 AluY 311 + 2 301 106482 128 1 2 101 5 7 61 chain 3390 chr2 243199373 + 44198584 44198623 MER4D0 881 + 768 807 217289 39 chain 24068 chr2 243199373 + 44223938 44224226 AluSx1 309 + 11 299 109943 122 1 0 148 0 1 17 chain 5655 chr2 243199373 + 44243252 44243325 MLT1A0 366 + 282 355 188523 73 chain 17725 chr2 243199373 + 44245585 44245869 LTR7B 505 - 146 505 133632 34 1 2 23 0 88 17 35 11 69 0 10 105 chain 254848 chr2 243199373 + 44247673 44251487 HERVH-int 3825 - 7 3747 15993 210 0 1 268 0 4 258 1 8 53 1 0 214 11 0 103 0 1 35 0 3 564 5 10 381 0 11 194 6 7 62 9 0 158 2 1 48 15 0 30 49 52 104 12 11 232 5 273 6 0 1 17 0 2 5 82 45 26 0 2 5 17 14 14 0 1 52 1 0 91 305 0 163 chain 6185 chr2 243199373 + 44251569 44251668 LTR7B 505 - 7 105 183696 44 14 13 41 chain 24033 chr2 243199373 + 44286049 44286413 THE1C 375 - 0 375 110152 126 20 33 10 35 33 173 chain 108059 chr2 243199373 + 44286414 44288167 THE1C-int 1605 - 1 1445 34700 84 321 0 209 0 1 591 2 1 17 0 40 9 42 1 199 5 12 105 0 6 169 chain 171699 chr2 243199373 + 44293507 44295518 SVA_D 2077 - 21 2071 21856 617 0 1 15 0 49 161 1 0 12 0 78 30 1 0 55 0 1 89 45 5 26 50 0 484 0 2 425 chain 2403 chr2 243199373 + 44294488 44294533 SVA_D 2077 - 775 820 127777 45 chain 2456 chr2 243199373 + 44294559 44294605 SVA_D 2077 - 846 892 127777 46 chain 5930 chr2 243199373 + 44299799 44299882 L1MA5 2750 + 2542 2625 185883 20 1 0 18 0 2 30 1 0 13 chain 39142 chr2 243199373 + 44333100 44333946 MER41A 554 - 0 554 70551 141 6 16 180 0 1 54 311 0 38 4 11 41 4 5 67 chain 5124 chr2 243199373 + 44355599 44355705 MER53 195 - 26 195 193838 57 12 65 12 11 21 14 chain 13379 chr2 243199373 + 44360898 44361080 MER50 708 + 502 685 146788 37 7 8 138 chain 9406 chr2 243199373 + 44364126 44364241 MER67C 710 + 588 703 163529 115 chain 9497 chr2 243199373 + 44365784 44365920 LTR26B 539 - 398 539 163091 35 6 11 95 chain 4299 chr2 243199373 + 44374752 44374799 THE1D 372 - 37 84 203235 47 chain 3854 chr2 243199373 + 44411264 44411310 MIR 256 + 142 188 209562 46 chain 24033 chr2 243199373 + 44462480 44462763 AluSp 311 + 20 303 110149 283 chain 44675 chr2 243199373 + 44475738 44476281 L1PA6 6164 - 2 545 63405 146 1 0 189 0 1 207 chain 6980 chr2 243199373 + 44485672 44485768 MSTB1 431 + 334 431 177605 84 1 2 11 chain 192356 chr2 243199373 + 44487820 44489927 L1PA4 6152 + 4044 6151 19825 2107 chain 8261 chr2 243199373 + 44495845 44496004 L1MB2 1706 + 901 1055 169619 4 1 0 42 21 19 17 10 8 64 chain 42531 chr2 243199373 + 44497585 44498907 MER51A 677 - 16 677 65979 42 4 9 23 652 0 41 12 13 17 1 0 133 8 10 146 4 0 33 21 1 14 0 9 11 5 7 11 1 0 121 7 5 15 chain 25284 chr2 243199373 + 44501310 44501612 AluSp 311 - 9 311 103291 302 chain 4239 chr2 243199373 + 44509676 44509755 MER53 195 + 8 83 204021 48 14 10 17 chain 34416 chr2 243199373 + 44530724 44531120 L1PA6 6164 - 2 398 77036 396 chain 55288 chr2 243199373 + 44562624 44563546 L1PA15 4387 + 3437 4366 55530 8 0 15 20 1 0 109 14 20 16 8 8 29 10 19 130 1 3 16 21 0 39 0 1 21 3 1 21 1 0 19 1 0 140 0 4 30 1 0 24 13 12 43 2 1 21 5 0 9 0 11 40 6 3 44 3 1 12 6 5 25 1 0 9 chain 2820 chr2 243199373 + 44580230 44580260 Tigger4b 360 - 302 332 228477 30 chain 384671 chr2 243199373 + 44610766 44616046 L1PB1 5432 - 119 5374 10623 17 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 6 2 9 1 0 12 0 7 14 3 0 11 3 0 208 0 1 186 1 0 87 3 0 175 9 1 135 0 1 15 1 3 22 12 13 45 1 0 8 0 1 141 0 1 326 2 0 10 0 3 217 1 7 24 0 2 629 1 0 77 48 0 73 7 13 60 4 9 117 5 0 664 1 3 223 7 11 173 8 9 8 10 0 7 1 0 144 0 4 20 1 2 16 21 6 43 8 17 61 1 0 4 0 1 70 10 11 39 0 10 39 0 1 5 2 1 35 1 14 95 1 6 119 0 10 6 10 0 32 51 50 133 1 0 177 18 24 14 1 0 128 chain 16996 chr2 243199373 + 44649155 44649496 MSTB 430 + 0 421 135605 96 53 74 22 30 86 37 14 17 89 chain 17090 chr2 243199373 + 44651711 44652045 L1PB1 5432 + 5116 5424 135349 22 1 0 8 1 0 12 5 1 10 2 0 51 2 1 15 1 0 29 13 19 12 3 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 23601 chr2 243199373 + 44656723 44656969 AluYb8 318 + 65 311 112586 246 chain 95854 chr2 243199373 + 44671787 44673179 MER61-int 3695 + 2322 3695 37860 30 4 0 178 1 18 217 8 13 85 1 0 37 1 0 37 1 0 214 5 4 154 1 13 22 42 3 78 12 10 87 17 9 37 1 12 14 1 0 57 6 0 44 chain 16832 chr2 243199373 + 44712595 44712831 Tigger3a 397 - 0 239 136038 43 18 21 175 chain 24544 chr2 243199373 + 44717426 44717702 AluSp 311 - 24 300 107290 276 chain 5781 chr2 243199373 + 44751258 44751331 MLT1G 592 - 418 491 187345 73 chain 14041 chr2 243199373 + 44752999 44753149 L1PA3long 6157 - 0 150 144419 150 chain 12336 chr2 243199373 + 44753149 44753287 L1PA3long 6157 + 5768 5906 150874 138 chain 16364 chr2 243199373 + 44764997 44765226 L1PB2 3958 + 3611 3838 137300 6 1 0 64 2 1 46 0 3 24 2 0 21 1 0 62 chain 30296 chr2 243199373 + 44783589 44783907 AluYb8 318 - 0 318 83933 318 chain 55598 chr2 243199373 + 44790606 44791253 L1PA5 6144 - 2 637 55362 12 10 0 251 1 0 74 1 0 298 chain 5186 chr2 243199373 + 44799197 44799341 L1MB3 1562 - 56 174 193179 47 67 40 15 0 1 15 chain 30091 chr2 243199373 + 44804357 44805290 MER34D 576 + 2 564 84528 54 0 5 48 0 10 19 480 92 49 5 6 234 26 27 18 chain 67848 chr2 243199373 + 44814584 44815440 SVA_D 2077 + 0 898 49307 30 1 18 11 13 0 147 6 3 47 0 1 285 0 40 108 41 1 20 0 40 147 chain 32133 chr2 243199373 + 44815498 44816058 SVA_F 1814 + 688 1219 80637 23 0 40 24 1 0 13 128 0 13 2 1 5 0 42 7 1 0 24 0 2 54 0 1 10 0 15 119 0 1 46 1 0 48 0 1 37 0 1 4 chain 9121 chr2 243199373 + 44815559 44815687 SVA_F 1814 + 918 1068 85782 8 0 6 14 1 16 23 0 1 82 chain 87751 chr2 243199373 + 44816071 44817042 SVA_E 1901 + 848 1901 40464 58 5 91 98 1 0 609 3 1 189 1 0 7 chain 104147 chr2 243199373 + 44817561 44818704 L1PA3long 6157 - 664 1811 35706 201 0 4 942 chain 60539 chr2 243199373 + 44818704 44819362 L1PA3long 6157 + 5499 6157 52555 658 chain 18686 chr2 243199373 + 44819638 44819906 MER44B 551 + 281 550 130977 100 0 2 21 2 0 103 13 14 29 chain 144919 chr2 243199373 + 44821200 44823282 L1PA7 6471 + 4707 6470 25337 96 0 2 797 0 4 8 0 3 83 1 4 279 336 4 284 18 16 163 5 8 12 chain 23974 chr2 243199373 + 44828323 44828602 AluSp 311 + 10 289 110484 279 chain 3815 chr2 243199373 + 44835649 44835710 L1MA5A 2387 - 12 70 210169 13 1 0 4 1 0 18 1 0 23 chain 61145 chr2 243199373 + 44851469 44852153 L1PA4 6152 - 2 688 52274 336 0 2 348 chain 161613 chr2 243199373 + 44856746 44858531 L1PA3long 6157 + 4357 6142 23113 1785 chain 32573 chr2 243199373 + 44859729 44860175 MLT2A1 477 + 1 477 79895 126 5 6 35 5 2 215 5 37 55 chain 5598 chr2 243199373 + 44979371 44979454 MADE1 96 - 1 96 189098 39 8 20 36 chain 13078 chr2 243199373 + 44989648 44989797 L1PA4 6152 + 5995 6143 147925 118 1 0 30 chain 17840 chr2 243199373 + 45018248 45018607 THE1B 368 - 0 368 133275 18 45 44 66 8 16 10 38 38 59 10 12 105 chain 79301 chr2 243199373 + 45021315 45022221 L1PA5 6144 + 5231 6140 43910 62 2 6 697 1 0 144 chain 10727 chr2 243199373 + 45040080 45040236 MER53 195 - 16 195 157291 52 2 0 9 1 25 80 0 1 12 chain 38929 chr2 243199373 + 45046011 45046545 MER1A 529 - 7 529 70831 73 9 20 357 39 16 56 chain 18533 chr2 243199373 + 45066099 45066388 L1PA8 5853 - 0 290 131418 91 6 5 15 5 4 37 0 1 4 6 8 6 1 0 74 5 3 33 0 3 6 chain 13239 chr2 243199373 + 45118348 45118508 THE1C 375 - 212 373 147326 48 0 1 112 chain 114117 chr2 243199373 + 45118516 45120149 THE1C-int 1605 - 6 1605 33066 259 1 0 136 1 0 34 11 6 119 7 31 59 2 3 54 1 0 119 24 7 13 0 9 292 114 13 96 9 11 165 0 57 101 2 1 14 chain 30251 chr2 243199373 + 45120149 45120523 THE1C 375 - 0 375 84061 188 0 1 186 chain 8730 chr2 243199373 + 45142166 45142298 MER5A 189 + 44 189 167023 35 0 12 74 10 11 13 chain 3881 chr2 243199373 + 45209365 45209432 MER5A 189 - 27 96 209153 16 10 11 23 0 1 18 chain 24527 chr2 243199373 + 45213126 45213417 AluY 311 + 6 298 107390 120 0 1 171 chain 21889 chr2 243199373 + 45215213 45215629 MSTA 426 - 0 426 120664 105 111 125 38 9 5 153 chain 30952 chr2 243199373 + 45261599 45262027 LTR7B 505 - 2 505 82596 49 14 13 54 0 1 4 0 1 19 1 0 43 0 1 38 0 2 26 6 68 66 0 10 108 chain 285054 chr2 243199373 + 45263269 45266895 HERVH-int 3825 - 0 3825 14350 75 0 1 149 0 2 149 1 4 6 3 0 101 8 218 39 9 11 402 1 0 4 0 1 501 0 1 151 0 4 290 4 31 456 15 0 97 18 21 12 0 1 14 13 14 291 1 0 24 2 3 25 11 10 22 1 0 39 0 37 15 70 0 24 12 10 35 5 0 152 5 9 374 chain 27338 chr2 243199373 + 45266897 45267291 LTR7B 505 - 2 505 95149 49 14 13 54 0 1 24 1 0 39 0 1 11 1 5 21 6 101 69 0 10 105 chain 13178 chr2 243199373 + 45278323 45278499 L1PA8 5853 - 0 174 147557 11 0 1 81 1 0 19 2 1 49 1 0 12 chain 556490 chr2 243199373 + 45286698 45292726 L1PA2 6032 - 0 6032 672 858 1 5 1797 1 0 227 0 4 1300 0 1 185 4 0 541 1 0 201 0 1 912 chain 30285 chr2 243199373 + 45293324 45293753 MLT2A1 477 - 66 477 83981 15 16 0 11 4 1 61 1 0 150 1 5 25 0 1 128 3 0 14 chain 558541 chr2 243199373 + 45302883 45308915 L1PA2 6032 + 0 6032 451 917 0 1 736 4 0 1487 0 4 227 1 0 2660 chain 58213 chr2 243199373 + 45313756 45314495 L1PA8 5853 + 5120 5853 53858 489 3 1 69 1 0 5 15 14 42 2 1 19 1 0 93 chain 41693 chr2 243199373 + 45317592 45318175 L1PA8 5853 - 0 572 67039 93 8 7 12 2 1 61 1 0 69 7 5 43 12 11 18 7 0 96 1 2 93 0 1 60 chain 30137 chr2 243199373 + 45358789 45359311 LTR12F 595 - 0 595 84361 210 1 0 33 0 1 4 25 64 32 41 0 5 1 0 31 14 5 24 1 9 32 2 79 66 chain 18179 chr2 243199373 + 45361057 45361454 MSTB1 431 - 0 397 132383 60 0 5 29 108 104 31 2 0 60 24 23 57 2 4 24 chain 277950 chr2 243199373 + 45372900 45376585 L1PB1 5432 + 24 5404 14751 109 2 0 81 7 1789 491 30 0 79 22 5 18 1 0 1062 0 1 62 1 4 260 0 1 4 1 0 375 0 1 180 1 0 82 3 0 114 9 3 66 5 4 288 1 2 9 3 0 19 1 0 11 19 14 9 2 0 52 1 0 18 1 0 44 1 0 15 1 0 4 8 6 5 8 0 16 7 4 15 2 0 27 1 0 18 1 0 13 chain 5643 chr2 243199373 + 45445195 45445272 L1MB1 2102 + 1741 1816 188628 4 1 0 10 1 0 61 chain 21764 chr2 243199373 + 45449968 45450259 AluSp 311 + 0 288 121156 19 5 4 102 2 0 163 chain 4640 chr2 243199373 + 45462262 45462558 Charlie2a 992 + 380 670 199197 29 1 0 10 171 172 22 38 32 25 chain 16600 chr2 243199373 + 45467635 45467846 L1PA8 5853 + 5646 5853 136671 33 1 0 10 1 0 51 2 1 19 1 0 93 chain 67050 chr2 243199373 + 45473349 45474243 L1PA8 5853 + 4960 5853 49633 46 0 3 48 10 1 34 2 7 465 1 0 44 2 0 71 1 0 9 1 0 51 6 5 16 1 0 23 0 1 29 1 7 33 chain 10082 chr2 243199373 + 45519009 45519157 THE1A-int 1579 + 0 116 159205 28 32 0 88 chain 22172 chr2 243199373 + 45519157 45519476 MLT2A1 477 + 122 477 119483 18 0 1 27 2 6 150 1 0 61 4 0 13 4 40 39 chain 8383 chr2 243199373 + 45591706 45591849 MER63C 923 + 406 556 168950 24 1 0 66 26 34 26 chain 25885 chr2 243199373 + 45602303 45602714 MSTB 430 - 15 430 100499 60 0 11 48 8 4 63 32 22 6 0 5 73 0 1 50 6 8 38 4 3 23 chain 2947 chr2 243199373 + 45635496 45635527 U2 167 - 136 167 226134 31 chain 6818 chr2 243199373 + 45648010 45648091 L1PA5 6144 - 9 87 178811 14 3 0 64 chain 456183 chr2 243199373 + 45652658 45658925 L1PA7 6471 + 0 6469 8537 72 0 1 92 1 18 20 34 0 24 17 2 152 0 1 30 1 0 800 1 5 232 11 10 123 3 0 3 29 0 76 0 1 36 0 756 66 0 2 115 1 2 129 231 7 465 318 3 208 1 0 27 23 30 41 3 16 270 0 1 158 1 3 337 0 4 333 0 4 147 5 3 90 3 0 34 1 0 665 0 3 83 0 2 35 3 4 95 28 16 115 7 20 115 0 8 53 1 5 129 3 1 171 chain 2551 chr2 243199373 + 45654274 45654303 L1PA7 6471 + 2635 2664 228530 29 chain 18937 chr2 243199373 + 45654726 45654951 L1PA7 6471 + 3931 4156 130061 225 chain 23991 chr2 243199373 + 45655422 45655697 AluY 311 + 15 289 110375 234 1 0 40 chain 36560 chr2 243199373 + 45661914 45662359 L1PA6 6164 - 2 444 74158 242 2 0 27 1 0 173 chain 78160 chr2 243199373 + 45728466 45729394 L1P1 4361 + 4 946 44433 111 6 20 811 chain 49614 chr2 243199373 + 45729394 45729980 L1PA5 6144 + 5563 6144 59305 44 5 0 411 0 2 116 2 0 8 chain 5575 chr2 243199373 + 45782930 45783019 LTR26 622 + 529 618 189319 13 1 0 23 10 11 42 chain 26132 chr2 243199373 + 45807815 45808121 AluSg7 307 - 0 307 99475 175 0 1 131 chain 17375 chr2 243199373 + 45817560 45817873 THE1C 375 + 0 317 134583 15 2 0 55 15 16 60 56 61 110 chain 30024 chr2 243199373 + 45819053 45819407 THE1A 353 + 0 353 84731 110 1 0 243 chain 22964 chr2 243199373 + 45862607 45863289 THE1B 368 + 1 368 115788 25 14 30 112 1 0 14 328 2 7 2 0 3 1 0 18 1 0 35 1 2 44 1 0 75 chain 4278 chr2 243199373 + 45894821 45894881 L1MC2 1988 - 0 59 203487 42 1 0 17 chain 25347 chr2 243199373 + 45904491 45904758 AluYb8 318 - 15 282 102974 267 chain 16417 chr2 243199373 + 45923081 45923260 L1PA3long 6157 - 0 181 137161 146 0 2 33 chain 28555 chr2 243199373 + 45935473 45935829 THE1B 368 + 0 368 90937 44 0 15 113 1 0 28 2 0 168 chain 23710 chr2 243199373 + 45950737 45951030 AluSq4 311 - 5 300 111980 43 0 1 130 0 1 120 chain 22738 chr2 243199373 + 45952711 45952985 AluSc 308 + 22 296 116878 274 chain 28860 chr2 243199373 + 45978948 45979254 AluYa5 310 - 3 309 89618 306 chain 44330 chr2 243199373 + 46068289 46068837 MLT2A2 560 - 0 560 63788 69 0 1 77 4 15 398 chain 11973 chr2 243199373 + 46083922 46084250 L1MA6 2487 - 93 355 152314 16 3 0 39 122 73 34 21 5 20 1 2 66 0 1 6 chain 126396 chr2 243199373 + 46143890 46145376 LTR12C 1709 - 0 1708 28978 194 0 106 181 0 4 106 4 2 4 1 0 264 0 118 259 2 1 146 0 1 36 3 0 286 chain 9356 chr2 243199373 + 46383053 46383156 L1PA2 6032 + 5928 6032 163772 89 0 1 14 chain 23877 chr2 243199373 + 46418971 46419226 L1PA3long 6157 + 5902 6157 111042 255 chain 13432 chr2 243199373 + 46433797 46433941 AluYb8 318 + 174 318 146566 144 chain 274998 chr2 243199373 + 46446766 46449938 L1P2 5180 + 2017 5178 14924 858 15 1 119 1 0 220 0 1 299 1 0 179 0 3 946 0 3 444 1 0 46 1 0 9 1 2 27 1 0 4 chain 40451 chr2 243199373 + 46451073 46451541 L1PA5 6144 + 5668 6144 68662 18 0 4 320 0 6 116 3 1 11 chain 49907 chr2 243199373 + 46473286 46473874 LTR10C 591 - 0 591 59086 81 0 2 63 0 1 5 0 1 178 1 0 260 chain 3934 chr2 243199373 + 46484489 46484531 MSTB 430 - 320 362 208349 42 chain 20124 chr2 243199373 + 46485975 46486326 MSTB 430 + 9 387 126755 115 72 90 12 0 2 24 0 1 22 0 1 31 5 10 70 chain 63593 chr2 243199373 + 46506882 46507578 L1PA3long 6157 - 0 696 51191 696 chain 5644 chr2 243199373 + 46545672 46545768 Tigger9b 617 + 412 510 188624 55 18 20 23 chain 10510 chr2 243199373 + 46642302 46642419 L1PA4 6152 + 6034 6151 158207 117 chain 38477 chr2 243199373 + 46645613 46646091 L1P1 4361 + 1 479 71475 110 1 0 4 0 1 363 chain 517411 chr2 243199373 + 46699197 46705243 L1PA5 6144 - 5 6144 5436 13 0 1 210 0 4 613 1 5 81 0 1 326 0 1 262 13 9 1155 1 0 484 2 0 7 0 2 1123 0 4 141 0 5 513 14 8 92 1 4 204 0 71 271 4 0 395 0 14 120 chain 156370 chr2 243199373 + 46749444 46751357 L1PA8A 6298 - 18 1948 23816 89 0 1 76 0 1 205 7 8 142 2 1 257 0 7 9 2 1 481 1 6 177 2 1 148 0 1 159 0 1 117 0 3 39 chain 27874 chr2 243199373 + 46752331 46752628 AluYd8 298 + 0 297 93443 297 chain 16886 chr2 243199373 + 46825579 46825794 MER30 238 + 11 238 135875 89 0 14 81 2 0 43 chain 143472 chr2 243199373 + 46829988 46832103 L1MA3 4352 + 2217 4315 25565 97 6 5 22 3 6 112 0 1 57 5 0 231 0 1 68 0 1 78 0 1 47 3 4 367 19 18 5 0 1 40 1 0 8 5 1 140 1 0 76 0 1 61 0 9 179 43 40 5 2 0 117 8 12 64 49 27 61 2 1 19 0 2 24 14 4 4 0 1 17 1 11 19 12 10 23 chain 31515 chr2 243199373 + 46854306 46855729 L1PA16 3655 - 774 1596 81623 184 23 22 9 0 1 58 971 369 163 0 1 15 chain 5860 chr2 243199373 + 46858139 46858215 L1MC4 1079 - 976 1051 186585 34 1 0 41 chain 8438 chr2 243199373 + 46866120 46866261 MER20 218 - 29 161 168637 37 0 2 65 9 0 9 10 8 11 chain 27930 chr2 243199373 + 46910141 46910448 AluYa5 310 - 6 310 93237 178 1 0 28 3 1 97 chain 40197 chr2 243199373 + 46970308 46970813 MER41A 554 - 0 509 69033 32 1 0 103 7 11 88 0 1 274 chain 2736 chr2 243199373 + 46983674 46983731 MER33 330 - 10 74 229665 14 7 15 11 1 0 24 chain 14392 chr2 243199373 + 47015681 47015960 Ricksha_c 1012 + 736 988 143228 30 1 0 13 6 5 79 2 0 29 1 0 5 2 0 33 14 5 5 1 0 9 16 6 33 chain 105167 chr2 243199373 + 47047226 47048426 L1P1 4361 - 20 1216 35461 12 2 1 23 1 0 157 1 0 472 0 1 4 1 0 500 1 0 26 chain 28084 chr2 243199373 + 47130141 47130492 THE1A 353 + 0 353 92698 110 1 0 99 4 7 137 chain 118810 chr2 243199373 + 47130492 47132008 THE1A-int 1579 + 0 1579 31482 24 3 4 16 0 1 378 10 8 26 0 1 145 0 10 10 6 67 92 0 2 157 14 3 186 1 2 246 5 4 197 chain 27822 chr2 243199373 + 47132008 47132359 THE1A 353 + 0 353 93623 42 1 0 68 1 0 53 1 2 47 0 3 138 chain 19222 chr2 243199373 + 47138788 47139018 AluY 311 + 10 237 129465 120 4 0 79 0 1 27 chain 124161 chr2 243199373 + 47326688 47328118 LTR12C 1709 + 0 1709 29647 650 0 278 184 1 0 6 2 0 106 0 4 481 chain 411325 chr2 243199373 + 47328210 47333112 HERV9-int 5642 + 0 4808 9768 337 0 1 376 4 13 64 1 0 125 9 5 185 83 0 4 1 0 622 16 0 815 0 1 2260 chain 6348 chr2 243199373 + 47329314 47329391 HERV9-int 5642 + 1029 1106 182402 77 chain 119551 chr2 243199373 + 47334236 47335721 LTR12C 1709 + 0 1709 31200 30 22 22 492 0 1 105 0 119 66 1 2 275 1 0 6 2 0 106 0 4 212 0 1 21 39 10 4 1 0 43 0 131 59 chain 35014 chr2 243199373 + 47345307 47345746 MER1A 529 + 92 529 76175 327 0 1 37 11 8 64 chain 55025 chr2 243199373 + 47350964 47353357 L1MA3 4352 - 20 1610 55692 4 1 0 13 1 0 27 1 0 6 1 0 22 2 0 24 4 0 34 1468 816 239 0 2 44 142 0 39 2 1 319 chain 29411 chr2 243199373 + 47375680 47376028 L1PA5 6144 - 9 357 87012 134 6 7 8 1 0 199 chain 26137 chr2 243199373 + 47429253 47429723 L1PA3long 6157 + 5642 6157 99458 17 170 215 283 chain 3503 chr2 243199373 + 47450102 47450155 MSTC 436 - 381 436 215310 37 1 3 15 chain 3185 chr2 243199373 + 47470779 47470825 MER45A 178 + 99 145 221214 21 0 1 6 1 0 18 chain 3498 chr2 243199373 + 47507894 47507932 tRNA-Val-GTY 66 - 28 66 215390 38 chain 23200 chr2 243199373 + 47521591 47521961 MLT2A1 477 + 48 467 114680 85 6 7 28 0 4 20 41 41 146 0 5 13 1 41 20 1 0 9 chain 11644 chr2 243199373 + 47524356 47524502 MER65D 500 + 0 144 153724 129 1 0 7 1 0 8 chain 25695 chr2 243199373 + 47536470 47536776 PABL_A 660 - 324 635 101304 7 0 5 299 chain 20970 chr2 243199373 + 47538761 47539125 THE1B 368 + 0 368 124031 111 0 3 6 17 15 42 29 23 10 0 4 10 10 12 33 0 2 54 6 7 36 chain 25542 chr2 243199373 + 47541484 47541790 AluSq10 312 + 0 304 102043 299 2 0 5 chain 3580 chr2 243199373 + 47543561 47543605 MLT1D 503 - 379 423 213986 44 chain 22977 chr2 243199373 + 47560873 47561154 AluSc5 308 + 0 282 115731 109 2 1 155 0 2 15 chain 12009 chr2 243199373 + 47562458 47562610 BC200 147 + 0 147 152158 42 2 0 96 3 0 9 chain 4362 chr2 243199373 + 47575552 47575646 LTR37B 484 + 9 107 202423 49 29 33 16 chain 24300 chr2 243199373 + 47585267 47585554 AluSp 311 - 9 296 108655 287 chain 18379 chr2 243199373 + 47586678 47586897 7SK 245 - 0 222 131847 73 0 3 146 chain 22542 chr2 243199373 + 47624722 47625005 AluSg4 309 - 19 301 117839 90 2 1 191 chain 3308 chr2 243199373 + 47633532 47633572 THE1B 368 + 328 368 218814 40 chain 119500 chr2 243199373 + 47633587 47635132 THE1B-int 1605 + 15 1593 31217 290 0 1 126 0 25 8 0 2 214 16 17 210 0 1 483 7 8 94 0 2 97 chain 22299 chr2 243199373 + 47646210 47646491 AluSp 311 - 19 300 118915 118 1 0 62 1 2 99 chain 170100 chr2 243199373 + 47659569 47661710 SVA_D 2077 - 15 2074 22038 624 6 1 96 1 0 134 78 0 155 42 16 6 1 0 54 5 6 22 4 0 7 15 8 21 18 14 137 3 0 33 0 3 86 0 40 576 0 3 17 chain 3875 chr2 243199373 + 47660430 47660478 SVA_D 2077 - 645 689 149228 30 5 1 13 chain 2524 chr2 243199373 + 47660478 47660508 SVA_D 2077 - 566 596 165583 30 chain 3905 chr2 243199373 + 47660663 47660705 SVA_D 2077 - 898 940 109878 42 chain 64773 chr2 243199373 + 47681828 47682580 L1PA5 6144 - 0 760 50675 160 6 12 402 0 2 184 chain 27842 chr2 243199373 + 47718216 47718512 AluYa5 310 - 0 296 93554 296 chain 14181 chr2 243199373 + 47719662 47719827 LTR3 431 + 250 416 143951 94 0 1 71 chain 3495 chr2 243199373 + 47738964 47739007 MER3 215 - 0 43 215432 43 chain 20466 chr2 243199373 + 47758830 47759107 MER51E 476 + 0 286 125716 43 12 18 62 0 3 160 chain 43285 chr2 243199373 + 47809066 47809617 MER41A 554 - 0 554 65071 126 0 1 110 1 2 222 5 6 87 chain 40610 chr2 243199373 + 47809808 47810312 LTR7B 505 - 14 505 68422 240 30 17 234 chain 40240 chr2 243199373 + 47818211 47818785 LTR7B 505 - 9 505 68960 244 91 14 6 2 0 5 2 0 137 0 3 87 chain 3428 chr2 243199373 + 47818462 47818524 LTR7B 505 - 195 252 216610 12 2 0 9 1 0 31 2 0 5 chain 22185 chr2 243199373 + 47821763 47822173 LTR19A 502 + 0 430 119426 34 5 4 37 5 0 78 11 0 24 5 79 15 33 0 6 5 0 78 14 15 60 chain 7236 chr2 243199373 + 47822812 47822891 LTR26B 539 - 460 539 175856 79 chain 4429 chr2 243199373 + 47846148 47846209 MLT1C 463 + 28 87 201595 5 2 0 54 chain 102722 chr2 243199373 + 47850871 47852275 L1MA2 4263 - 555 1965 36074 42 4 3 26 0 1 52 5 0 18 9 8 33 1 2 236 0 5 244 10 15 37 25 5 6 0 2 41 3 20 31 0 3 102 0 1 6 1 0 102 24 23 346 chain 17990 chr2 243199373 + 47852419 47852939 L1MA6 2487 - 95 548 132886 15 3 0 34 108 52 8 0 6 39 57 41 125 8 5 19 60 65 44 chain 3174 chr2 243199373 + 47868135 47868168 L1MC4 1079 - 974 1007 221438 33 chain 3754 chr2 243199373 + 47890898 47890943 MER57B1 401 + 0 45 211083 45 chain 22701 chr2 243199373 + 47898733 47900087 LTR49-int 1717 - 418 1113 117074 14 5 7 17 1 2 34 3 0 26 45 40 23 1 0 55 97 106 36 33 17 10 14 19 6 0 3 21 33 0 59 725 106 7 1 0 32 1 0 55 chain 5699 chr2 243199373 + 47914427 47914501 LTR37A 408 - 21 95 188126 74 chain 22093 chr2 243199373 + 47914728 47915021 AluSq10 312 + 20 309 119827 142 18 17 114 3 0 16 chain 10965 chr2 243199373 + 47918802 47919123 LTR49-int 1717 - 1394 1661 156344 47 6 9 84 8 7 12 122 71 24 3 0 7 2 0 6 chain 6403 chr2 243199373 + 47923064 47923150 MER61E 571 - 481 571 182003 47 1 5 38 chain 48311 chr2 243199373 + 47924605 47925177 LTR6B 557 - 0 557 60235 150 0 1 5 2 0 148 15 1 252 chain 27709 chr2 243199373 + 47925419 47925818 LTR7 482 - 0 482 94004 49 14 16 50 1 2 41 0 10 19 0 31 39 0 1 109 8 46 69 chain 13564 chr2 243199373 + 47926308 47926532 LTR49 580 - 374 579 146118 26 0 15 8 38 4 18 1 0 56 0 1 77 chain 28255 chr2 243199373 + 47926533 47926957 MER34C_ 573 - 122 541 92093 15 1 0 7 1 0 58 44 41 298 chain 16313 chr2 243199373 + 47929589 47929820 MER34C_ 573 + 12 246 137456 128 11 13 57 0 1 35 chain 70674 chr2 243199373 + 47943321 47944347 LTR13 1007 + 0 1007 48076 73 2 0 23 29 14 206 73 74 238 2 1 57 5 1 9 0 3 116 0 1 159 3 1 31 chain 24684 chr2 243199373 + 47948892 47949159 SVA_D 2077 - 0 267 106525 267 chain 41096 chr2 243199373 + 47954820 47955346 MER41A 554 - 0 531 67770 68 13 18 445 chain 41448 chr2 243199373 + 47973971 47974804 MSTA-int 1630 + 6 541 67351 477 298 0 58 chain 17235 chr2 243199373 + 47986391 47986612 MER34B 572 - 0 220 134969 15 0 1 9 2 0 195 chain 7650 chr2 243199373 + 47988795 47988891 MER41B 635 - 58 154 173234 50 1 0 4 0 1 41 chain 34357 chr2 243199373 + 47989922 47990368 MLT2A1 477 - 0 477 77121 63 0 30 100 7 3 108 1 5 25 0 1 142 chain 9420 chr2 243199373 + 47992454 47992583 AluSz 310 + 9 139 163455 101 10 11 18 chain 22348 chr2 243199373 + 48011600 48011899 AluSp 311 - 10 311 118710 14 2 0 22 4 7 179 1 0 36 0 2 41 chain 23138 chr2 243199373 + 48046378 48046652 AluSg7 307 - 32 307 114952 143 0 1 131 chain 24057 chr2 243199373 + 48068066 48068365 AluY 311 + 11 307 110000 121 0 1 158 2 0 5 2 0 11 chain 21083 chr2 243199373 + 48087982 48088268 AluSp 311 - 9 291 123611 139 30 26 117 chain 265129 chr2 243199373 + 48137717 48140707 L1PA5 6144 - 9 3007 15435 146 1 0 17 3 1 1481 0 4 419 3 4 149 0 1 661 0 5 110 chain 8373 chr2 243199373 + 48152915 48153020 MER41A 554 - 88 197 169010 48 0 4 57 chain 7547 chr2 243199373 + 48173755 48173838 LTR12C 1709 - 333 416 173894 83 chain 279347 chr2 243199373 + 48184793 48189110 L1MA1 4479 + 228 4183 14671 45 8 6 81 1 0 11 4 14 22 0 1 133 34 0 70 0 18 156 1 5 163 3 11 162 1 0 27 2 1 55 0 1 20 4 3 187 0 16 158 0 1 87 4 5 54 0 1 159 0 24 8 32 8 27 1 0 4 0 1 47 15 12 7 0 3 40 9 7 82 1 6 339 1 0 65 0 4 17 1 0 64 3 2 103 2 0 32 1 0 63 343 0 92 1 0 27 2 0 173 15 13 41 0 1 38 1 0 11 5 1 121 1 0 5 3 0 131 3 0 60 2 3 132 4 3 21 3 1 15 2 1 70 1 0 33 1 0 62 5 6 6 1 0 14 9 5 56 1 0 70 1 0 29 2 0 35 1 0 9 1 0 4 5 1 16 6 0 11 chain 47137 chr2 243199373 + 48198314 48200652 L1PB1 5432 + 2763 5103 20517 55 1 0 7 0 1 9 1 0 133 0 1 750 1 2 15 0 1 18 1 2 268 8 9 422 4 0 54 4 3 96 0 4 12 3 0 187 5 3 79 0 1 130 0 3 75 chain 516202 chr2 243199373 + 48200666 48206997 L1PA6 6164 + 0 6162 5558 153 12 14 314 3 2 1840 4 5 49 5 0 758 26 5 35 163 15 116 2 0 1059 0 4 259 5 6 160 3 2 500 0 4 689 35 36 131 4 0 6 chain 11235 chr2 243199373 + 48203865 48203991 L1PA6 6164 - 4425 4551 155278 126 chain 7117 chr2 243199373 + 48207125 48207478 L1PB1 5432 + 5105 5424 20517 12 3 0 21 25 20 9 2 0 53 19 17 44 1 0 15 1 0 4 19 8 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 54224 chr2 243199373 + 48259161 48259829 L1PA8 5853 - 0 664 56211 19 0 1 73 1 0 19 2 1 61 13 12 59 1 0 46 1 0 373 chain 24344 chr2 243199373 + 48268788 48269182 L1PA11 4918 - 340 718 108401 11 2 0 13 1 0 14 32 23 9 4 0 19 1 0 15 1 0 80 2 1 46 0 1 15 0 2 129 chain 45775 chr2 243199373 + 48278178 48278728 MER41A 554 - 1 554 62252 138 0 2 275 0 1 137 chain 100079 chr2 243199373 + 48278737 48280021 MER41-int 2638 - 2 1302 36755 182 8 9 264 0 14 144 0 2 102 1 0 14 2 0 210 1 0 88 7 9 139 0 1 122 chain 491807 chr2 243199373 + 48280038 48285647 L1PA5 6144 - 15 6144 7281 132 0 1 638 1 0 1683 1 0 1181 7 4 109 0 4 5 0 2 55 6 2 233 0 1 445 8 0 477 0 3 385 0 1 152 0 525 91 chain 43630 chr2 243199373 + 48288733 48289268 MER41A 554 - 9 554 64653 173 0 1 276 2 11 84 chain 23952 chr2 243199373 + 48339784 48340077 AluSg 306 + 2 301 110604 38 0 1 213 0 5 42 chain 42554 chr2 243199373 + 48346239 48346774 MER41A 554 + 0 554 65957 258 0 19 8 7 0 118 0 7 144 chain 29720 chr2 243199373 + 48365548 48365992 L1M1 2793 + 766 1219 85756 6 2 0 30 1 0 29 2 0 8 1 0 18 0 13 23 33 29 81 1 0 36 0 4 51 0 4 81 1 0 40 chain 3957 chr2 243199373 + 48366002 48366047 MLT1A0 366 - 222 267 208026 45 chain 28914 chr2 243199373 + 48370203 48370561 L1PB1 5432 - 4273 4636 89396 117 0 5 241 chain 4545 chr2 243199373 + 48380005 48380058 MLT2D 439 - 364 417 200287 53 chain 3471 chr2 243199373 + 48393491 48393529 MER45B 1037 + 991 1029 215803 38 chain 76049 chr2 243199373 + 48394113 48395134 MER11C 1089 - 32 1089 45447 137 1 0 54 0 1 127 0 1 38 1 0 5 0 4 77 59 79 166 1 0 42 5 9 62 0 9 246 chain 4634 chr2 243199373 + 48429426 48429481 LTR48 738 - 46 101 199256 55 chain 36294 chr2 243199373 + 48433461 48433903 LTR2 463 - 19 463 74510 69 12 13 30 0 1 331 chain 19810 chr2 243199373 + 48444714 48444953 7SK 245 + 1 240 127780 239 chain 15956 chr2 243199373 + 48457766 48458002 AluJo 314 + 89 312 138496 43 8 0 24 2 0 5 0 2 125 5 0 24 chain 52229 chr2 243199373 + 48460956 48461525 L1PA5 6144 + 5575 6144 57481 569 chain 17824 chr2 243199373 + 48466457 48466845 L1MA2 4263 + 3757 4113 133325 35 40 14 37 1 0 4 4 5 69 60 58 45 1 5 29 7 0 47 1 0 8 chain 12861 chr2 243199373 + 48473373 48473534 L1PA8 5853 + 5694 5853 148792 45 3 2 19 1 0 93 chain 6423 chr2 243199373 + 48477604 48477734 L1MB3 1562 + 989 1119 181837 63 35 37 8 2 0 22 chain 14156 chr2 243199373 + 48478405 48478561 L1PA3long 6157 + 6001 6157 144023 156 chain 36509 chr2 243199373 + 48486691 48487196 MER41C 542 - 14 542 74229 191 7 28 107 17 18 32 1 0 102 0 1 5 0 1 43 chain 39335 chr2 243199373 + 48488925 48489575 MER4A1_ 611 + 0 611 70273 29 2 1 91 31 9 136 42 27 85 42 41 192 chain 15774 chr2 243199373 + 48505439 48505678 MER44A 345 - 65 345 139044 31 4 0 71 0 10 62 0 4 21 16 48 21 1 0 12 chain 39125 chr2 243199373 + 48512097 48512609 LTR10A 586 + 23 565 70569 36 0 8 6 0 1 29 0 21 16 1 0 62 9 10 69 1 2 136 1 0 146 chain 29761 chr2 243199373 + 48515691 48516065 THE1C 375 + 0 375 85598 176 1 0 4 0 2 193 chain 464375 chr2 243199373 + 48523835 48529915 L1PA8 5853 - 3 5803 8242 90 1 0 19 2 1 52 2 0 9 3 2 68 2 0 47 6 5 459 5 6 83 0 2 845 1 4 99 0 2 26 4 0 125 0 2 31 4 8 641 4 3 257 0 9 165 312 0 26 0 1 514 0 1 294 23 46 142 0 15 11 0 2 116 0 1 169 0 1 813 0 3 62 7 17 15 0 1 231 0 4 120 6 8 69 66 26 10 2 0 22 chain 24837 chr2 243199373 + 48565537 48565837 AluYh9 303 - 9 303 105688 27 8 0 157 0 2 108 chain 38619 chr2 243199373 + 48611679 48612158 MER9a3 513 + 0 513 71267 14 0 25 71 0 1 201 0 7 114 2 3 77 chain 22333 chr2 243199373 + 48612796 48613082 AluY 311 + 11 303 118757 193 4 10 89 chain 325918 chr2 243199373 + 48613386 48617283 HERVK9-int 4720 + 36 4720 12349 13 8 5 4 1 0 66 1 0 7 2 1 30 13 12 773 0 2 555 1 2 942 0 755 437 4 0 204 2 9 591 1 0 69 0 34 173 chain 35564 chr2 243199373 + 48617283 48617794 MER9a3 513 + 0 513 75461 18 0 2 90 0 1 136 4 2 9 0 18 16 30 12 129 6 7 73 chain 23790 chr2 243199373 + 48636646 48636953 AluY 311 + 1 302 111527 54 1 2 69 1 2 34 6 0 132 2 0 8 chain 12323 chr2 243199373 + 48649245 48649438 MER30 238 + 31 238 150920 75 20 32 40 8 10 50 chain 3558 chr2 243199373 + 48672622 48672678 MER5A1 166 - 44 100 214382 12 0 6 7 6 0 31 chain 4270 chr2 243199373 + 48677408 48677496 MIR 256 + 94 185 203620 43 28 31 17 chain 25601 chr2 243199373 + 48696038 48696388 THE1A 353 - 14 353 101724 20 15 6 111 1 0 92 1 0 110 chain 9437 chr2 243199373 + 48721426 48721550 MER47A 366 - 71 196 163375 98 1 2 25 chain 23856 chr2 243199373 + 48733806 48734103 AluY 311 + 4 302 111145 255 9 10 33 chain 40274 chr2 243199373 + 48751738 48752185 L1PA4 6152 - 24 470 68910 125 1 0 321 chain 140924 chr2 243199373 + 48781872 48784868 SVA_F 1814 - 11 1620 26000 529 989 0 308 457 19 10 0 1 48 1 0 50 1 1 267 0 40 336 chain 5553 chr2 243199373 + 48782406 48782494 SVA_F 1814 - 582 716 82985 51 2 0 5 0 48 30 chain 24790 chr2 243199373 + 48782494 48783390 SVA_F 1814 - 540 997 63800 71 149 0 240 247 15 49 2 1 17 0 1 25 1 0 8 79 22 8 chain 4796 chr2 243199373 + 48782605 48782681 SVA_F 1814 - 776 852 82985 76 chain 3002 chr2 243199373 + 48783126 48783158 SVA_F 1814 - 776 808 179297 32 chain 569 chr2 243199373 + 48783175 48783201 SVA_F 1814 - 776 802 142495 26 chain 731 chr2 243199373 + 48783347 48783382 SVA_F 1814 - 673 708 106454 35 chain 3524 chr2 243199373 + 48783713 48783750 SVA_F 1814 - 638 675 177130 37 chain 2842 chr2 243199373 + 48783771 48783802 SVA_F 1814 - 695 726 143229 31 chain 8134 chr2 243199373 + 48783802 48784096 SVA_F 1814 - 1086 1194 63800 64 189 3 41 chain 5683 chr2 243199373 + 48783866 48783928 SVA_F 1814 - 790 852 143229 62 chain 2320 chr2 243199373 + 48783929 48783957 SVA_F 1814 - 867 896 196391 10 0 1 18 chain 4950 chr2 243199373 + 48784001 48784055 SVA_F 1814 - 699 753 137955 54 chain 5317 chr2 243199373 + 48784096 48784154 SVA_F 1814 - 794 852 137955 58 chain 24274 chr2 243199373 + 48788998 48789291 AluSz6 309 - 8 301 108820 293 chain 4253 chr2 243199373 + 48802830 48802887 L1MB1 2102 - 341 396 203840 6 1 0 12 1 0 37 chain 3274 chr2 243199373 + 48820725 48820759 MER4E1 777 - 79 113 219500 34 chain 4805 chr2 243199373 + 48834216 48834270 MER97b 579 - 402 456 197305 54 chain 144584 chr2 243199373 + 48841002 48842660 SVA_D 2077 - 7 2076 25385 113 0 1 13 0 20 522 11 89 94 0 310 851 1 0 16 0 4 18 1 0 18 chain 3349 chr2 243199373 + 48850506 48850554 L1PA17 2846 + 2637 2684 218070 13 2 1 33 chain 7004 chr2 243199373 + 48853983 48854142 L1MA9 1812 - 1336 1499 177438 47 2 1 27 41 45 5 2 0 5 0 3 30 chain 23430 chr2 243199373 + 48859523 48859814 AluSc5 308 - 10 303 113478 21 0 2 270 chain 152505 chr2 243199373 + 48864560 48866892 L1PA14 3548 + 1221 3452 24283 274 0 1 41 0 8 37 0 3 49 124 7 331 0 4 187 16 18 178 1 2 105 7 8 61 6 5 39 1 2 6 1 0 59 29 49 77 0 2 164 19 15 47 2 0 5 2 0 56 6 8 41 13 9 12 2 0 7 2 1 82 1 0 82 1 0 30 2 1 8 5 1 36 4 2 12 10 8 14 1 0 37 chain 3335 chr2 243199373 + 48864989 48865026 L1PA14 3548 + 1545 1582 218322 37 chain 4239 chr2 243199373 + 48865032 48865077 L1PA14 3548 + 1591 1636 204031 45 chain 3804 chr2 243199373 + 48874380 48874428 L1MB2 1706 - 12 60 210321 48 chain 3386 chr2 243199373 + 48881314 48881359 L1ME1 1623 - 763 808 217352 45 chain 18993 chr2 243199373 + 48885766 48886041 L1PA16 3655 - 2534 2811 130130 101 4 8 114 6 7 24 3 0 23 chain 22725 chr2 243199373 + 48895706 48895979 AluY 311 + 18 288 116954 113 3 0 157 chain 3111 chr2 243199373 + 48914374 48914410 MER3 215 - 127 163 222709 36 chain 456783 chr2 243199373 + 48929418 48935299 L1PA6 6164 - 13 6164 8519 175 12 13 287 13 4 416 1 0 212 0 1 59 1 0 77 1 388 618 2 1 195 2 0 7 0 2 7 1 0 10 0 1 488 0 1 145 1 0 4 0 1 705 2 0 744 0 3 9 4 6 94 25 26 209 1 0 425 0 17 56 21 0 73 0 1 104 77 1 8 0 1 108 19 0 25 87 59 7 0 14 161 0 1 4 1 0 11 0 5 8 14 9 145 chain 23941 chr2 243199373 + 48962953 48963337 MSTA 426 + 0 426 110675 21 0 2 85 18 39 55 1 3 26 25 22 40 4 24 109 chain 65674 chr2 243199373 + 48966226 48966957 L1PA4 6152 + 5416 6152 50254 725 0 5 6 chain 545544 chr2 243199373 + 48966978 48972994 L1PA3long 6157 + 10 6156 2003 142 0 1 623 0 128 231 0 1 5020 chain 40776 chr2 243199373 + 48986102 48986627 L1PA8 5853 - 0 524 68204 93 2 1 14 2 1 56 2 1 8 2 1 70 2 0 44 1 0 37 0 4 176 1 3 15 chain 483149 chr2 243199373 + 48988722 48995121 L1PA7 6471 - 3 6422 7621 144 27 26 402 0 2 173 0 10 9 0 2 76 0 3 331 14 0 342 0 1 271 7 11 379 1 2 23 4 9 362 11 23 381 1 2 34 6 4 806 1 0 240 6 1 179 0 3 46 325 3 414 0 1 118 0 2 325 0 3 7 11 51 248 18 9 70 0 1 66 0 1 23 0 113 206 23 193 106 16 15 147 chain 7817 chr2 243199373 + 49010860 49011110 L1MB7 1623 - 557 806 172202 16 17 19 6 3 0 24 94 92 39 3 5 48 chain 122403 chr2 243199373 + 49038784 49040355 THE1B-int 1605 - 5 1605 30247 396 1 0 243 0 1 61 0 1 189 2 3 134 5 4 45 0 1 8 1 0 28 1 0 5 1 2 22 0 25 129 0 1 37 0 2 263 chain 20750 chr2 243199373 + 49052970 49053330 MER47A 366 - 4 366 124787 24 42 43 4 1 0 221 35 37 33 chain 3775 chr2 243199373 + 49059866 49059909 tRNA-Gln-CAG 43 - 0 43 210755 43 chain 4502 chr2 243199373 + 49114639 49114841 MER33 330 - 57 300 200753 23 0 1 29 132 172 18 chain 16809 chr2 243199373 + 49122481 49122661 L1PA3long 6157 + 5962 6142 136093 180 chain 26571 chr2 243199373 + 49128899 49129272 THE1C 375 - 0 375 97756 25 1 0 169 1 0 40 21 25 116 chain 109237 chr2 243199373 + 49144910 49146142 L1PA4 6152 - 9 1247 34388 330 0 1 178 0 1 325 0 4 399 chain 24474 chr2 243199373 + 49146142 49146434 L1PA4 6152 + 4577 4875 104921 52 1 0 161 0 2 19 0 5 59 chain 226182 chr2 243199373 + 49150595 49153163 L1PA5 6144 + 3555 6137 17521 794 0 4 793 0 5 142 1 5 703 0 1 135 chain 28836 chr2 243199373 + 49158764 49159072 AluYf4 310 - 2 310 89745 308 chain 54179 chr2 243199373 + 49203450 49204128 L1P3 4156 - 17 695 56242 24 2 1 7 2 0 100 1 0 8 0 4 35 0 1 453 8 7 38 chain 10160 chr2 243199373 + 49204128 49204242 L1PA7 6471 + 6347 6461 159800 114 chain 29892 chr2 243199373 + 49212836 49213151 AluYb8 318 - 3 318 85123 315 chain 325928 chr2 243199373 + 49235166 49238724 L1PA2 6032 - 1 3561 12347 156 0 1 947 0 1 2455 chain 4092 chr2 243199373 + 49247779 49247830 MER58A 224 - 144 195 206056 51 chain 24335 chr2 243199373 + 49305221 49305520 THE1B 368 - 0 298 108450 200 1 0 98 chain 355207 chr2 243199373 + 49309158 49313260 L1PA4 6152 + 6 6149 11469 90 0 525 149 0 128 367 0 1 773 0 1 1130 0 1 769 0 1 210 42 1425 425 0 1 147 chain 3764 chr2 243199373 + 49312646 49312688 L1P1 4361 - 1623 1665 208221 42 chain 140617 chr2 243199373 + 49360526 49362190 L1PA3long 6157 + 4463 6133 26051 26 0 1 209 0 1 5 1 0 328 0 1 272 1 5 822 chain 24065 chr2 243199373 + 49388942 49389222 AluY 311 + 16 292 109954 266 4 0 10 chain 25925 chr2 243199373 + 49398104 49398472 THE1B 368 + 0 368 100317 15 2 0 12 1 0 13 1 6 57 0 1 67 12 10 112 1 0 75 chain 472399 chr2 243199373 + 49407670 49413527 L1PA7 6471 - 4 5913 7960 157 11 12 507 1 0 87 0 1 9 5 17 52 0 7 1292 0 1 124 0 1 187 11 9 152 0 1 298 0 4 25 1 2 22 1 0 400 0 4 203 0 4 248 1 0 868 0 5 80 7 9 105 13 14 48 0 1 243 1 0 513 0 15 163 3 0 19 chain 28999 chr2 243199373 + 49430503 49430865 L1PA7 6471 + 6115 6468 88986 21 0 1 184 5 4 127 5 0 9 4 0 7 chain 483671 chr2 243199373 + 49437042 49443076 L1PA6 6164 + 0 6159 7601 128 0 1 16 17 16 261 9 5 31 8 7 44 6 10 28 4 7 233 0 17 151 0 1 184 0 2 310 1 0 208 6 9 53 1 0 124 25 38 298 1 0 30 0 4 108 0 56 123 0 1 4 0 12 71 0 1 139 1 0 117 0 30 312 2 1 32 0 1 54 20 22 317 0 3 329 0 1 699 1 0 7 25 7 360 1 2 67 6 0 38 1 2 183 1 4 691 0 1 148 chain 489079 chr2 243199373 + 49454729 49460932 L1PA6 6164 - 2 6161 7406 138 0 1 285 0 2 417 1 4 1143 0 1 46 281 155 488 1 0 46 1 0 51 22 22 145 0 1 130 1 0 4 0 1 108 0 2 387 1 5 255 24 39 74 0 30 1256 4 0 102 0 17 119 1 9 85 0 4 80 2 1 321 0 1 184 chain 6458 chr2 243199373 + 49460932 49461028 U6 107 - 0 97 181568 47 9 10 40 chain 388922 chr2 243199373 + 49470551 49475457 L1PA7 6471 + 1554 6464 10489 508 5 6 561 12 3 164 0 17 76 0 4 17 0 1 121 1 0 246 8 9 11 20 2 233 0 1 15 0 4 384 0 1 62 1 3 253 3 0 231 0 1 526 1 0 37 4 0 32 0 1 111 5 6 137 0 1 88 0 2 26 0 2 149 9 12 180 0 1 337 0 1 287 9 4 36 chain 7603 chr2 243199373 + 49494867 49494957 L1PA7 6471 + 6223 6313 173521 90 chain 12294 chr2 243199373 + 49494959 49495104 L1PA7 6471 + 6314 6459 151032 145 chain 4143 chr2 243199373 + 49509228 49509388 MER106A 234 + 71 234 205338 17 6 8 39 79 80 19 chain 118003 chr2 243199373 + 49510736 49512051 L1PA4 6152 + 4835 6152 31800 1087 0 2 228 chain 21191 chr2 243199373 + 49520039 49520415 THE1D 372 + 0 372 123238 50 9 0 23 5 6 43 6 10 43 1 0 5 29 31 58 17 16 87 chain 506185 chr2 243199373 + 49525612 49531676 L1PA6 6164 + 0 6152 6452 237 0 2 23 2 1 124 13 9 20 0 1 50 1 0 50 0 2 48 1 0 1763 1 2 268 0 2 390 0 2 195 0 1 400 6 1 1026 0 1 4 1 0 48 0 86 949 0 2 29 0 2 264 13 10 90 0 2 48 chain 120634 chr2 243199373 + 49532029 49533364 L1PA3long 6157 + 4810 6149 30826 493 1 5 841 chain 479517 chr2 243199373 + 49539320 49544716 L1PA4 6152 + 744 6152 7742 499 0 1 345 1 0 1697 0 1 1351 0 5 1271 0 4 225 0 2 7 chain 9186 chr2 243199373 + 49551147 49551337 L1PA17 2846 + 2482 2656 164628 17 4 0 20 13 4 52 9 10 6 1 0 7 3 2 31 1 0 19 1 0 6 chain 3779 chr2 243199373 + 49589074 49589116 THE1A 353 - 311 353 210675 42 chain 126703 chr2 243199373 + 49589118 49590692 THE1A-int 1579 - 2 1578 28885 54 0 1 4 1 0 366 0 1 57 16 17 1076 chain 58173 chr2 243199373 + 49602051 49602695 L1PA3long 6157 - 0 644 53889 644 chain 57158 chr2 243199373 + 49602696 49603313 L1PA3long 6157 + 4894 5511 54428 617 chain 40754 chr2 243199373 + 49607924 49608386 L1PA5 6144 - 5 468 68229 327 0 1 135 chain 29663 chr2 243199373 + 49612896 49613206 AluYa5 310 - 0 310 86005 310 chain 3172 chr2 243199373 + 49636347 49636387 MLT2B3 573 - 2 43 221526 9 0 1 31 chain 14602 chr2 243199373 + 49639484 49639650 L1PA4 6152 - 0 167 142577 18 0 1 148 chain 14594 chr2 243199373 + 49655840 49656010 L1PA6 6164 + 2792 2963 142615 72 0 1 98 chain 16395 chr2 243199373 + 49656012 49656219 L1PA6 6164 + 2964 3177 137221 200 0 6 7 chain 3979 chr2 243199373 + 49656234 49656328 L1PA6 6164 + 3186 3265 207697 10 10 0 35 16 10 6 0 1 17 chain 240844 chr2 243199373 + 49656328 49659214 L1PA6 6164 + 3268 6162 16731 636 0 2 421 0 1 155 1 0 34 0 3 792 0 4 486 6 4 45 0 1 185 0 1 81 2 1 42 chain 15543 chr2 243199373 + 49662952 49663137 L1PA7 6471 + 5407 5592 139755 185 chain 16854 chr2 243199373 + 49663138 49663690 L1PA7 6471 + 5598 5825 135960 24 5 13 108 1 0 44 332 0 38 chain 39098 chr2 243199373 + 49663696 49664171 L1PA7 6471 + 5833 6308 70604 475 chain 12277 chr2 243199373 + 49664172 49664328 L1PA7 6471 + 6310 6464 151088 149 2 0 5 chain 98575 chr2 243199373 + 49704080 49705297 L1PA7 6471 - 1447 2667 37130 352 0 4 317 0 3 87 0 1 123 1 0 134 0 1 5 13 7 33 0 1 152 chain 114003 chr2 243199373 + 49705309 49706728 L1PA7 6471 + 5042 6457 33096 188 0 5 55 16 5 166 0 1 159 2 0 164 0 1 345 1 2 182 0 1 141 chain 490141 chr2 243199373 + 49708017 49713620 L1PA4 6152 + 4 6152 7360 85 7 532 325 0 4 294 1 0 161 0 9 26 1 0 873 1 2 741 0 1 229 0 1 367 3 6 280 0 1 56 0 2 1035 1 0 266 1 3 699 1 0 150 chain 25137 chr2 243199373 + 49734254 49734588 THE1B 368 + 0 355 104086 44 0 15 109 1 0 32 1 0 106 5 13 36 chain 124455 chr2 243199373 + 49746123 49747727 L1PA7 6471 + 4842 6469 29556 107 1 0 36 1 0 5 2 3 446 0 1 181 1 0 9 0 1 211 13 14 426 38 62 37 0 2 75 4 0 11 chain 3244 chr2 243199373 + 49760088 49760134 L1M4c 1769 + 1697 1742 220117 30 2 1 14 chain 285430 chr2 243199373 + 49770205 49775970 HERVL-int 5654 - 5 5654 14328 217 0 7 58 0 3 137 0 1 183 8 14 33 0 8 617 0 4 252 11 3 18 0 1 304 2 3 70 2129 0 84 0 1 449 0 1977 895 4 3 16 2 11 131 0 4 33 10 10 102 chain 72492 chr2 243199373 + 49772130 49772993 L1P1 4361 - 792 1653 47269 261 5 6 94 0 1 374 4 0 125 chain 4326 chr2 243199373 + 49772993 49773041 L1PA4 6152 + 4900 4948 201725 48 chain 26046 chr2 243199373 + 49773043 49773346 L1PA4 6152 + 4949 5252 99842 303 chain 3542 chr2 243199373 + 49773346 49773394 L1PA4 6152 + 5253 5301 214680 48 chain 59499 chr2 243199373 + 49773405 49774090 L1PA4 6152 + 5311 5996 53109 685 chain 11186 chr2 243199373 + 49774091 49774227 L1PA4 6152 + 6004 6140 155485 136 chain 30076 chr2 243199373 + 49775970 49776382 MLT2A1 477 - 0 477 84577 32 5 64 207 1 5 61 5 7 101 chain 24173 chr2 243199373 + 49780415 49780721 THE1C 375 - 62 367 109358 126 1 2 36 2 0 141 chain 28685 chr2 243199373 + 49800274 49800578 AluYa5 310 - 7 310 90385 177 1 0 126 chain 6552 chr2 243199373 + 49811397 49811477 MLT1B 390 - 17 97 180831 80 chain 121457 chr2 243199373 + 49814701 49816149 L1PA6 6164 - 15 1472 30548 838 0 3 11 0 5 360 0 1 239 chain 69730 chr2 243199373 + 49838381 49839461 MER11A 1151 + 0 1146 48505 46 9 108 22 8 0 54 0 4 60 4 0 141 8 9 94 0 1 136 13 15 52 0 4 89 49 67 18 53 1 60 6 7 158 chain 38977 chr2 243199373 + 49862260 49862969 L1PA15 4387 - 32 706 70770 26 7 3 13 2 0 37 71 64 27 1 0 46 9 8 27 1 0 32 23 7 130 1 2 29 17 15 76 2 0 132 chain 117296 chr2 243199373 + 49865909 49867171 L1PA2 6032 - 2 1264 32025 1262 chain 7147 chr2 243199373 + 49895313 49895497 MSTB-int 1649 - 307 430 176432 81 75 21 10 7 0 11 chain 8153 chr2 243199373 + 49911587 49911687 L1PA17 2846 + 1672 1772 170211 100 chain 62131 chr2 243199373 + 49919053 49919852 L1PA8A 6298 - 23 823 51837 7 9 0 208 0 3 12 0 1 151 0 1 203 2 0 65 0 3 106 1 2 23 0 3 12 chain 37594 chr2 243199373 + 49925827 49926314 L1PA7 6471 + 6007 6465 72691 131 28 0 167 4 5 149 2 0 6 chain 16846 chr2 243199373 + 49953775 49954089 THE1D 372 + 53 360 135997 22 19 0 48 5 9 34 14 22 5 5 0 24 11 17 102 2 1 23 chain 28184 chr2 243199373 + 49956762 49957070 AluYa5 310 + 0 307 92362 132 1 0 175 chain 27853 chr2 243199373 + 49958319 49958688 THE1B 368 - 0 368 93514 10 2 4 162 2 0 19 2 1 172 chain 14676 chr2 243199373 + 49977248 49977436 L1PA5 6144 + 5953 6144 142340 40 2 4 65 0 1 81 chain 2546 chr2 243199373 + 50019858 50020125 MER21C 908 - 537 906 232547 24 215 318 18 1 0 9 chain 44470 chr2 243199373 + 50029824 50030335 MER9a1 513 - 0 510 63614 227 1 0 283 chain 29354 chr2 243199373 + 50037801 50038111 AluYb8 318 - 8 318 87275 310 chain 350047 chr2 243199373 + 50049939 50054398 L1PA8A 6298 - 410 4916 11605 338 0 3 62 2 0 14 1 2 203 1 2 165 12 14 242 2 0 701 3 7 255 0 1 89 0 1 109 0 1 190 0 1 13 1 0 30 0 4 16 3 7 28 1 0 253 0 2 290 0 1 206 0 1 130 1 2 19 1 0 168 0 2 53 0 1 154 23 24 77 0 1 308 15 28 41 1 3 59 5 11 174 chain 8743 chr2 243199373 + 50059646 50059781 THE1D 372 - 228 372 166956 42 0 1 4 2 0 20 12 22 55 chain 20953 chr2 243199373 + 50066697 50066929 AluYk4 311 - 14 246 124091 232 chain 13558 chr2 243199373 + 50091845 50092046 L1PA8 5853 + 5638 5846 146141 41 1 0 9 1 0 52 2 1 19 4 3 48 1 12 23 chain 30427 chr2 243199373 + 50092405 50092723 AluYb8 318 - 0 318 83618 318 chain 75815 chr2 243199373 + 50102200 50103023 L1PA3long 6157 - 0 823 45589 823 chain 80752 chr2 243199373 + 50103030 50103941 L1PA3long 6157 + 4409 5300 43289 374 20 0 517 chain 4591 chr2 243199373 + 50103944 50104003 LTR8 732 - 163 221 199731 6 1 0 52 chain 497101 chr2 243199373 + 50109031 50115455 L1PA7 6471 + 0 6438 7001 205 68 76 124 1 0 7 1 0 61 1 0 104 13 10 155 17 22 152 0 1 5 9 6 91 8 9 93 8 0 28 0 4 100 0 19 335 0 1 16 1 2 949 1 0 66 2 0 668 5 3 172 3 2 97 7 1 260 0 1 641 1 2 83 1 0 92 5 9 54 0 5 82 0 4 54 2 1 113 2 1 51 9 4 165 5 7 90 1 0 317 0 4 573 22 16 7 0 7 70 10 17 91 17 0 33 chain 11499 chr2 243199373 + 50139238 50139412 Tigger3a 397 + 182 361 154307 120 0 1 6 18 22 30 chain 109196 chr2 243199373 + 50172531 50173827 L1PA7 6471 - 1 1306 34395 55 0 4 577 0 1 12 0 2 199 2 0 142 0 5 124 1 0 184 chain 17630 chr2 243199373 + 50173827 50174035 L1PA7 6471 + 4935 5143 133659 208 chain 13199 chr2 243199373 + 50180944 50181153 L1PA8 5853 + 5641 5846 147468 38 3 2 11 1 0 41 13 12 15 2 1 85 chain 21807 chr2 243199373 + 50205025 50205293 AluSc5 308 + 3 274 120994 4 0 1 11 0 2 253 chain 46048 chr2 243199373 + 50234524 50235053 L1PA7 6471 - 154 682 61994 323 1 0 205 chain 12451 chr2 243199373 + 50268017 50268156 L1PA5 6144 - 12 151 150456 139 chain 5453 chr2 243199373 + 50268157 50268220 L1P1 4361 + 3963 4026 190489 63 chain 20942 chr2 243199373 + 50310870 50311172 LTR12C 1709 - 674 1059 124145 15 3 44 63 0 41 35 1 0 118 4 6 63 chain 18907 chr2 243199373 + 50322930 50323138 L1PA5 6144 - 4 212 130343 208 chain 22975 chr2 243199373 + 50362555 50362841 AluY 311 + 7 295 115733 101 1 2 22 0 1 162 chain 13056 chr2 243199373 + 50393213 50393402 Tigger4a 237 + 30 221 148012 31 15 18 63 1 0 79 chain 50504 chr2 243199373 + 50414639 50415263 L1PA7 6471 - 1412 2048 58649 70 1 0 34 3 0 121 5 16 227 0 5 163 chain 112346 chr2 243199373 + 50415293 50416662 L1PA7 6471 + 5092 6467 33577 534 0 6 504 7 8 154 10 11 152 2 0 6 chain 19429 chr2 243199373 + 50464913 50465283 THE1D 372 + 0 370 128876 40 50 41 17 10 11 26 7 11 38 13 12 42 0 6 92 2 1 33 chain 133649 chr2 243199373 + 50480008 50481761 L1PA10 4194 - 58 1807 27289 20 5 2 985 2 0 413 3 1 11 0 4 36 2 1 39 0 1 11 12 11 214 chain 62830 chr2 243199373 + 50500883 50501699 L1PA8 5853 + 5063 5853 51523 501 1 0 2 20 0 42 2 0 23 0 1 47 1 0 7 1 0 54 2 1 19 1 0 93 chain 13425 chr2 243199373 + 50555285 50555466 MER30 238 + 46 238 146600 47 0 3 11 4 12 119 chain 513781 chr2 243199373 + 50584922 50591386 L1PA7 6471 + 3 6465 5803 225 2 1 184 0 1 761 2 1 27 0 9 12 31 0 454 0 1 233 1 2 415 1 0 14 20 16 80 1 2 47 13 14 18 0 2 112 1 4 46 6 0 837 0 1 46 5 6 38 1 0 202 1 15 673 0 1 16 1 3 144 0 8 28 5 1 274 1 2 7 1 0 76 6 9 550 1 0 121 0 1 354 0 1 361 3 0 6 chain 109350 chr2 243199373 + 50638164 50639464 SVA_B 1603 + 7 1601 34357 15 15 8 11 9 11 35 0 19 336 0 116 236 0 164 17 3 1 415 8 10 200 chain 6001 chr2 243199373 + 50657512 50657658 MER3 215 + 8 169 185231 31 1 0 4 30 31 34 18 33 28 chain 28909 chr2 243199373 + 50708894 50709205 AluYa5 310 - 2 310 89421 182 3 0 126 chain 25769 chr2 243199373 + 50710220 50710639 MER41B 635 + 194 606 101013 139 6 0 114 70 69 6 0 1 4 1 0 79 chain 25322 chr2 243199373 + 50726811 50727104 AluSx1 309 + 8 301 103114 293 chain 22790 chr2 243199373 + 50785915 50786225 AluY 311 + 0 288 116630 52 18 1 28 6 0 46 1 2 159 chain 10608 chr2 243199373 + 50800926 50801122 MER2 342 + 131 321 157786 122 1 0 4 47 42 22 chain 12086 chr2 243199373 + 50821151 50821307 THE1C 375 + 187 339 151853 32 4 0 120 chain 13295 chr2 243199373 + 50841630 50841779 L1PA5 6144 + 5989 6138 147106 149 chain 25350 chr2 243199373 + 50850926 50851227 L1PA4 6152 - 1 304 102950 116 6 10 47 2 0 130 chain 10727 chr2 243199373 + 50851227 50851343 L1PA4 6152 + 5687 5803 157290 116 chain 72047 chr2 243199373 + 50881181 50881994 L1PA4 6152 - 12 826 47460 161 1 3 78 1 0 572 chain 4759 chr2 243199373 + 50889775 50889831 MER30 238 + 173 229 197818 56 chain 8444 chr2 243199373 + 50900974 50901069 L1PA7 6471 + 6105 6200 168597 95 chain 13837 chr2 243199373 + 50901077 50901243 L1PA7 6471 + 6301 6467 145104 166 chain 68086 chr2 243199373 + 51006170 51007421 L1PA7 6471 - 7 936 49207 93 1 2 4 1 0 124 0 4 59 9 8 31 0 1 123 352 5 363 8 29 83 chain 14973 chr2 243199373 + 51048318 51048534 MER30 238 + 0 238 141401 96 0 1 10 6 24 30 0 6 23 3 0 48 chain 145611 chr2 243199373 + 51054762 51056423 SVA_D 2077 - 18 2077 25238 595 14 379 4 1 0 43 0 1 39 0 1 15 0 38 27 2 1 891 5 0 25 chain 21686 chr2 243199373 + 51120949 51121189 L1PA3long 6157 - 207 447 121447 240 chain 17877 chr2 243199373 + 51121189 51121386 L1PA3long 6157 + 5959 6156 133174 197 chain 7598 chr2 243199373 + 51159642 51159867 L1PB1 5432 + 5221 5430 173557 14 2 1 32 72 64 14 2 0 24 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 15103 chr2 243199373 + 51165524 51165707 THE1D-int 1627 - 1430 1613 141021 183 chain 3155 chr2 243199373 + 51172191 51172240 MER58A 224 - 1 51 221857 18 4 5 27 chain 27351 chr2 243199373 + 51179102 51179392 AluYa5 310 - 9 299 95109 290 chain 11059 chr2 243199373 + 51226666 51226790 MER11B 1079 + 939 1063 155972 124 chain 31514 chr2 243199373 + 51233342 51233698 L1PA4 6152 + 5800 6152 81625 346 4 0 6 chain 115434 chr2 243199373 + 51243000 51244400 L1PA7 6471 + 4949 6466 32630 281 0 115 171 0 1 99 1 4 839 2 0 7 chain 28138 chr2 243199373 + 51275430 51275729 AluYg6 310 + 0 299 92511 299 chain 8701 chr2 243199373 + 51275751 51275859 MER30 238 + 130 238 167188 108 chain 35985 chr2 243199373 + 51302700 51303151 MER4A1 472 - 0 472 74916 204 0 21 247 chain 28490 chr2 243199373 + 51303183 51303588 MER4-int 2692 - 6 375 91228 46 0 2 57 31 0 94 0 3 79 10 0 88 chain 3439 chr2 243199373 + 51303593 51303633 MER4A1 472 - 432 472 216425 40 chain 26146 chr2 243199373 + 51305689 51305992 AluSc 308 - 6 308 99417 60 1 0 242 chain 9586 chr2 243199373 + 51305992 51306105 MER41A 554 + 433 546 162660 113 chain 37540 chr2 243199373 + 51313374 51313832 LTR2 463 + 0 463 72766 129 1 5 246 0 1 82 chain 18083 chr2 243199373 + 51350754 51350948 L1PA3long 6157 + 5961 6155 132642 194 chain 4478 chr2 243199373 + 51354213 51354267 L1MB2 1706 - 16 70 201032 54 chain 4198 chr2 243199373 + 51378238 51378286 LTR12C 1709 - 991 1039 189113 48 chain 13231 chr2 243199373 + 51378286 51378502 LTR12C 1709 - 761 935 147355 52 42 1 58 1 0 63 chain 2245 chr2 243199373 + 51378527 51378598 LTR12C 1709 - 641 712 173416 71 chain 26090 chr2 243199373 + 51392246 51392925 L1PBa 3878 - 3341 3839 99665 15 1 0 229 0 1 55 2 0 21 309 137 16 4 0 15 3 0 9 chain 80882 chr2 243199373 + 51405566 51406610 MER11A 1151 + 2 1144 43237 53 0 99 140 4 0 32 0 2 115 0 1 92 0 7 17 1 0 125 6 5 115 4 3 54 3 0 223 2 1 58 chain 3996 chr2 243199373 + 51433149 51433196 L1PA6 6164 + 6113 6162 207438 38 0 2 9 chain 20978 chr2 243199373 + 51434866 51435155 AluY 311 + 30 311 123995 4 1 0 84 6 0 148 5 4 41 chain 33289 chr2 243199373 + 51457060 51457427 L1PA3long 6157 - 285 652 78747 367 chain 11863 chr2 243199373 + 51457427 51457560 L1PA3long 6157 + 6021 6154 152774 133 chain 109489 chr2 243199373 + 51460657 51462162 THE1C-int 1605 - 0 1604 34319 65 0 26 453 0 2 134 1 0 15 3 4 93 28 29 43 5 8 29 1 0 188 16 16 48 14 21 98 0 6 163 0 54 95 2 3 11 chain 18644 chr2 243199373 + 51466838 51467072 AluY 311 + 72 303 131100 60 0 1 122 4 0 48 chain 17999 chr2 243199373 + 51490178 51490536 LTR7 482 - 6 482 132857 42 14 15 52 1 2 59 0 1 5 24 55 22 1 2 10 1 11 36 13 63 42 13 36 23 chain 8492 chr2 243199373 + 51495401 51495602 MLT2B1 522 - 260 462 168339 8 2 0 24 50 50 35 25 28 57 chain 29602 chr2 243199373 + 51508028 51508345 AluYb8 318 - 0 318 86206 191 0 1 126 chain 10916 chr2 243199373 + 51536588 51536788 MLT2B2 565 - 222 565 156536 20 14 65 49 29 121 88 chain 528108 chr2 243199373 + 51539859 51545983 L1PA4 6152 - 1 6138 4390 78 0 3 258 1 0 50 5 8 54 14 25 128 4 1 168 1 3 503 3 4 1186 1 0 304 1 0 213 0 1 457 5 0 319 0 1 1239 0 6 286 17 0 280 1 0 430 1 15 117 chain 45137 chr2 243199373 + 51550026 51550578 MER41A 554 - 0 554 62884 461 0 1 47 1 2 43 chain 24356 chr2 243199373 + 51582578 51582864 AluY 311 + 16 302 108339 286 chain 314163 chr2 243199373 + 51587118 51590773 L1PA5 6144 - 1288 4947 12844 532 9 5 165 1 5 732 0 1 225 0 1 179 0 1 1172 0 1 134 1 0 282 0 1 223 chain 111365 chr2 243199373 + 51590773 51592061 L1PA5 6144 + 4847 6144 33822 154 0 2 113 0 1 771 1 0 121 0 7 128 chain 21387 chr2 243199373 + 51605018 51605395 THE1C 375 + 0 375 122559 83 29 31 7 0 1 57 37 34 101 6 5 30 1 0 26 chain 271902 chr2 243199373 + 51608343 51611358 L1PA3long 6157 - 0 3023 15090 282 0 3 564 0 4 1615 1 0 416 0 2 137 chain 491334 chr2 243199373 + 51618535 51624774 L1PA7 6471 + 5 6469 7305 14 0 3 220 8 22 286 9 176 26 0 1 104 1 0 657 1 2 35 7 17 140 0 11 812 6 7 93 2 1 141 2 0 249 0 1 202 7 8 75 11 12 176 0 2 5 0 2 498 5 0 125 1 2 448 0 1 41 18 35 16 0 4 143 0 4 127 5 0 334 0 1 74 0 1 260 1 0 688 16 16 110 4 0 36 chain 74236 chr2 243199373 + 51624804 51626050 L1PB1 5432 + 4262 5424 46396 27 12 9 331 3 0 95 2 0 71 24 23 176 7 3 103 56 16 30 1 0 10 6 2 9 2 0 53 2 1 16 9 8 32 8 7 10 1 0 6 22 11 16 3 0 19 2 0 24 1 0 18 8 7 9 1 0 16 1 0 4 chain 5797 chr2 243199373 + 51629226 51629294 L1MDb 1215 + 800 868 187168 68 chain 26193 chr2 243199373 + 51630651 51631059 THE1B-int 1605 - 6 402 99229 73 1 0 122 20 21 55 32 20 105 chain 171997 chr2 243199373 + 51645336 51647240 L1PA3long 6157 + 4247 6155 21814 110 0 4 1794 chain 2920 chr2 243199373 + 51655281 51655312 MLT1C 463 + 93 124 226690 31 chain 34042 chr2 243199373 + 51655397 51655819 L1PA5 6144 + 5705 6144 77560 106 6 5 19 0 17 144 1 2 146 chain 4123 chr2 243199373 + 51662296 51662346 MADE1 96 + 46 96 205611 50 chain 46959 chr2 243199373 + 51663796 51664475 LTR12D 1347 + 403 1179 61246 20 0 1 12 4 0 92 8 39 6 2 0 121 0 17 262 0 1 6 0 2 20 48 99 78 chain 2910 chr2 243199373 + 51664482 51664519 LTR12D 1347 + 1083 1120 226883 37 chain 418387 chr2 243199373 + 51723361 51728577 L1PA5 6144 - 9 6144 9575 85 0 4 74 1 3 671 2 6 21 3 12 5 0 1 389 1 0 74 0 1 25 5 30 476 0 3 66 13 6 500 0 2 435 0 3 32 9 858 8 1 0 39 6 1 580 3 16 540 14 5 676 0 13 264 1 0 5 64 78 128 chain 64818 chr2 243199373 + 51766946 51767705 L1PA5 6144 - 3 759 50578 6 4 0 600 0 1 149 chain 70339 chr2 243199373 + 51767705 51768564 L1PA5 6144 + 4530 5383 48247 629 18 7 127 1 5 38 7 8 39 chain 109495 chr2 243199373 + 51777301 51778554 L1PA4 6152 - 9 1270 34318 834 0 7 258 0 1 161 chain 215018 chr2 243199373 + 51782790 51785214 L1PA4 6152 - 12 2450 18163 30 0 9 1876 0 5 518 chain 2887 chr2 243199373 + 51804694 51804741 MER2 342 + 132 183 227245 20 4 8 23 chain 24182 chr2 243199373 + 51820093 51820358 AluYc 301 + 26 291 109313 265 chain 179674 chr2 243199373 + 51839368 51841693 HERVL-int 5654 - 0 5164 21022 292 0 2 68 1 2798 161 0 1 95 0 3 41 0 1 44 0 1 54 10 19 19 0 4 314 0 2 824 0 2 34 0 5 180 0 12 27 1 0 118 0 1 42 chain 5301 chr2 243199373 + 51850548 51850612 MLT2D 439 + 132 196 192011 64 chain 147291 chr2 243199373 + 51857073 51858713 L1PA4 6152 + 4512 6152 24997 1640 chain 75681 chr2 243199373 + 51868316 51869222 L1PA7 6471 - 6 929 45665 414 1 0 40 0 1 30 0 14 349 0 3 72 chain 23591 chr2 243199373 + 51869226 51869503 L1PA7 6471 + 5235 5517 112626 238 0 5 39 chain 3202 chr2 243199373 + 51898703 51898740 MLT2B4 540 + 127 164 220918 37 chain 8151 chr2 243199373 + 51918992 51919092 MSTB 430 - 5 106 170221 51 0 1 49 chain 26768 chr2 243199373 + 51930882 51931171 AluYk11 308 - 4 293 97096 289 chain 44094 chr2 243199373 + 51961804 51962298 L1PA4 6152 + 5658 6152 64096 494 chain 299733 chr2 243199373 + 51962342 51965671 L1PA3long 6157 - 1 3337 13441 2597 3 0 94 0 9 164 1 0 28 0 2 442 chain 28121 chr2 243199373 + 51977021 51977315 AluYb8 318 - 24 318 92568 294 chain 89886 chr2 243199373 + 51977911 51979019 L1PA7 6471 - 37 1152 39687 124 1 2 614 0 1 63 6 10 265 1 2 34 chain 4237 chr2 243199373 + 51994159 51994318 L1MA8 2339 + 2119 2266 204059 29 58 49 19 19 17 24 1 0 9 chain 328490 chr2 243199373 + 51996169 52000000 L1PA5 6144 - 0 3822 12256 9 2 0 37 5 6 725 0 3 88 1 0 410 27 15 1096 1 0 74 1 0 1300 0 4 55 chain 183597 chr2 243199373 + 52000000 52002326 L1P2 5180 - 2845 5167 20619 15 0 1 12 6 7 736 4 3 53 1 2 713 1 0 6 1 0 272 20 18 244 7 6 98 1 0 136 chain 110084 chr2 243199373 + 52006576 52007998 LTR12C 1709 - 0 1709 34190 55 0 10 416 1 5 39 38 0 62 12 169 100 0 114 263 0 24 95 0 25 36 0 1 88 1 0 165 13 4 38 chain 64643 chr2 243199373 + 52063194 52063988 L1P3 4156 + 3345 4139 50727 576 0 3 183 2 0 6 1 0 26 chain 298693 chr2 243199373 + 52077869 52081152 L1PA2 6032 - 0 3273 13494 358 9 0 2631 1 0 284 chain 119808 chr2 243199373 + 52081152 52082493 L1HS 6032 + 579 1917 31092 185 4 0 307 1 2 844 chain 76732 chr2 243199373 + 52087129 52088351 L1MA1 4479 - 289 1472 45109 18 7 0 16 9 5 9 1 0 29 0 1 5 2 0 19 2 1 9 1 0 13 0 1 107 7 4 6 1 0 60 2 5 23 1 0 12 2 0 21 1 0 71 1 0 16 1 0 4 2 1 18 1 0 196 1 0 127 12 9 41 0 5 27 15 10 38 5 0 12 1 0 68 9 5 21 7 5 145 chain 88349 chr2 243199373 + 52091910 52093313 L1PB1 5432 - 11 1398 40244 20 1 0 10 1 0 14 51 75 6 1 0 15 1 0 44 36 35 32 20 14 12 8 6 24 1 0 11 23 0 260 0 1 219 0 2 110 22 15 268 13 14 180 chain 28982 chr2 243199373 + 52095400 52095710 AluYa5 310 - 0 310 89083 310 chain 87475 chr2 243199373 + 52096518 52097610 L1PA7 6471 - 6 1091 40573 6 2 0 86 0 1 240 0 1 419 3 0 56 23 19 257 chain 309576 chr2 243199373 + 52119054 52123204 L1P2 5180 + 594 4745 13020 145 21 0 44 0 15 242 4 5 4 1 0 32 12 18 69 9 6 274 10 9 40 11 12 206 1 0 173 0 1 481 6 4 209 3 4 503 8 12 10 0 1 76 1 0 26 0 1 15 1 5 597 1 0 338 0 1 37 0 4 145 0 4 59 27 15 309 chain 292375 chr2 243199373 + 52140764 52144521 L1PA8A 6298 + 2509 6290 13872 355 0 1 100 0 4 390 1 2 45 0 4 39 0 2 247 3 0 118 0 1 54 0 1 206 1 0 191 10 11 107 8 18 103 0 1 185 0 1 4 7 6 397 1 4 185 3 4 194 1 4 78 21 14 185 0 1 64 0 1 454 chain 82840 chr2 243199373 + 52166187 52167076 L1HS 6032 - 0 889 42400 889 chain 42764 chr2 243199373 + 52173506 52174061 MLT2A2 560 - 0 560 65705 8 0 4 265 0 1 4 1 0 250 0 1 27 chain 29702 chr2 243199373 + 52199131 52199450 AluYb8 318 - 0 318 85825 112 1 0 206 chain 4755 chr2 243199373 + 52205201 52205261 MSTD 398 + 6 67 197847 36 0 1 24 chain 20456 chr2 243199373 + 52224831 52225200 THE1B 368 + 0 368 125741 15 2 0 25 0 5 45 52 55 27 16 14 36 5 1 68 1 0 77 chain 115904 chr2 243199373 + 52233754 52235152 LTR12C 1709 + 0 1709 32495 428 26 17 353 4 320 106 0 4 481 chain 333186 chr2 243199373 + 52240281 52244712 L1PB1 5432 - 973 5408 12084 45 4 0 273 0 1 327 0 3 74 5 0 8 0 7 272 0 1 605 6 5 278 0 1 68 1 0 220 17 20 51 0 4 285 4 10 51 0 4 149 1 12 83 0 6 91 1 2 100 24 8 153 1 0 5 5 6 685 11 12 121 1 2 6 1 0 64 27 10 278 4 2 4 0 1 22 chain 11293 chr2 243199373 + 52246501 52246663 L1PA16 3655 + 3304 3465 155079 111 10 9 41 chain 277280 chr2 243199373 + 52250726 52254322 HERVH-int 3825 - 1 3825 14792 152 1 0 244 19 20 1210 6 0 97 42 47 584 1 0 13 15 17 8 9 0 173 2 1 124 0 4 36 0 2 96 12 11 190 6 274 5 0 1 17 0 2 5 133 96 61 3 2 332 chain 28368 chr2 243199373 + 52254334 52254738 LTR7 482 - 6 482 91704 37 18 20 125 0 31 38 0 1 109 9 47 68 chain 29750 chr2 243199373 + 52258160 52258569 MLT2A1 477 - 0 477 85657 19 1 0 21 6 0 9 4 74 180 7 11 19 1 2 142 chain 547334 chr2 243199373 + 52266556 52272684 L1PA3long 6157 - 11 6153 1788 347 9 0 1396 0 1 2224 0 1 984 0 3 141 0 17 878 13 0 11 1 15 124 chain 83668 chr2 243199373 + 52277372 52278417 MER11C 1089 + 0 1059 42048 217 3 8 25 6 7 59 4 8 155 12 9 104 0 1 95 0 4 45 0 1 148 0 1 172 chain 16264 chr2 243199373 + 52286478 52286865 MSTB 430 + 26 430 137566 49 90 91 35 47 59 44 0 5 53 5 4 64 chain 6037 chr2 243199373 + 52294504 52294573 Tigger3d 321 + 54 123 184921 69 chain 31604 chr2 243199373 + 52353439 52353827 MER4A1 472 + 0 389 81479 220 0 1 168 chain 35831 chr2 243199373 + 52358530 52358995 MER4A1 472 + 0 470 75091 39 5 10 421 chain 44655 chr2 243199373 + 52374461 52375007 L1PA7 6471 - 1 567 63428 4 1 0 273 0 9 204 0 1 12 0 11 52 chain 9235 chr2 243199373 + 52375007 52375114 L1PA7 6471 + 5798 5905 164375 107 chain 29313 chr2 243199373 + 52382991 52383302 AluYa5 310 + 0 310 87482 132 1 0 178 chain 28875 chr2 243199373 + 52400446 52400753 AluYa5 310 + 0 306 89562 132 1 0 174 chain 32276 chr2 243199373 + 52401489 52401920 MER57A1 433 + 0 433 80401 273 9 10 30 0 1 119 chain 5894 chr2 243199373 + 52407993 52408092 MER57-int 2662 + 2407 2500 186242 17 18 12 64 chain 28513 chr2 243199373 + 52408175 52408615 MER57A1 433 + 0 433 91132 55 11 7 108 0 1 5 18 14 82 5 6 89 10 9 57 chain 6558 chr2 243199373 + 52416552 52416657 L1MA7 2200 + 1868 1976 180790 46 0 5 28 13 11 18 chain 58579 chr2 243199373 + 52419663 52420406 MER4E 760 + 5 753 53656 18 0 1 143 1 0 202 0 2 63 1 0 86 0 1 125 0 2 82 0 1 22 chain 24784 chr2 243199373 + 52458954 52459353 L1PA14 3548 + 2916 3300 105976 21 19 16 47 9 5 104 9 5 17 2 0 6 1 0 84 2 1 78 chain 23425 chr2 243199373 + 52461997 52462274 L1PA6 6164 - 731 1008 113500 277 chain 60454 chr2 243199373 + 52462275 52462996 L1PA6 6164 + 5432 6162 52605 72 0 3 285 1 0 88 0 3 37 8 12 230 chain 120590 chr2 243199373 + 52482171 52483755 THE1A-int 1579 - 5 1578 30843 197 13 0 13 0 17 406 0 1 8 9 8 294 22 21 363 17 3 242 chain 46655 chr2 243199373 + 52490883 52491518 PABL_A 660 + 0 660 61493 11 6 22 14 5 9 12 16 19 406 1 0 134 0 3 30 chain 42943 chr2 243199373 + 52493955 52494566 PABL_A-int 1935 + 104 724 65487 22 9 27 142 1 0 30 14 2 10 1 0 69 4 6 144 0 2 6 0 1 159 chain 169775 chr2 243199373 + 52500856 52502828 L1PA5 6144 + 3594 6143 22078 423 0 573 1178 0 1 6 0 1 275 5 7 85 chain 21387 chr2 243199373 + 52508384 52508721 MSTA 426 + 18 405 122556 89 14 38 7 0 4 40 13 10 9 0 3 3 0 5 12 3 0 58 1 21 88 chain 49752 chr2 243199373 + 52514508 52515125 PABL_A 660 - 25 642 59191 328 6 5 67 0 1 216 chain 10123 chr2 243199373 + 52516793 52516923 PABL_A-int 1935 - 1702 1830 159983 94 8 6 28 chain 6689 chr2 243199373 + 52519084 52519180 PABL_A 660 - 516 613 179771 50 8 9 38 chain 4109 chr2 243199373 + 52519181 52519228 PABL_A 660 - 613 660 205790 47 chain 11652 chr2 243199373 + 52520991 52521159 LTR8A 794 - 271 439 153689 26 1 8 8 7 0 126 chain 28427 chr2 243199373 + 52528851 52529155 AluYa5 310 - 6 310 91480 304 chain 13612 chr2 243199373 + 52562093 52562309 MER41B 635 + 341 560 145931 69 5 9 32 18 17 92 chain 26203 chr2 243199373 + 52564798 52565188 LTR7 482 + 0 474 99184 101 15 14 17 0 51 41 5 37 46 0 1 111 14 15 40 chain 32935 chr2 243199373 + 52565793 52566242 MER4A1 472 - 16 472 79314 49 13 14 341 0 6 15 1 0 5 5 6 20 chain 5772 chr2 243199373 + 52571472 52571541 MER4A 717 - 19 88 187422 69 chain 6889 chr2 243199373 + 52587065 52587143 THE1C-int 1605 + 1515 1593 178285 78 chain 77935 chr2 243199373 + 52620178 52621314 THE1C-int 1605 - 0 1586 44554 197 0 1 53 50 1 74 7 8 37 5 1 56 3 0 218 21 519 93 16 22 306 chain 25667 chr2 243199373 + 52632747 52633034 AluYf4 310 + 0 286 101419 113 1 0 173 chain 53410 chr2 243199373 + 52636484 52637169 L1P3 4156 - 2897 3587 56752 267 32 9 82 0 23 148 0 5 156 chain 114637 chr2 243199373 + 52637169 52638526 L1PA7 6471 + 5069 6461 32907 516 0 1 16 5 9 10 1 0 673 0 31 136 chain 7645 chr2 243199373 + 52638944 52639039 MER101B 537 + 19 115 173259 36 0 1 59 chain 279065 chr2 243199373 + 52646861 52650039 L1P1 4361 + 1 3184 14690 606 0 1 584 6 9 1164 0 1 818 chain 29577 chr2 243199373 + 52705096 52705444 L1PA6 6164 - 8 356 86284 348 chain 322218 chr2 243199373 + 52714893 52719419 L1PA11 4918 - 414 4915 12512 15 1 0 17 2 0 60 0 6 12 7 6 53 2 1 10 1 0 7 1 0 107 29 0 15 1 4 36 0 2 5 2 0 117 24 29 45 46 43 180 20 4 29 0 5 6 4 1 4 1 0 120 0 4 268 0 10 207 0 1 64 0 3 198 1 3 49 0 1 43 0 1 169 1 0 78 1 0 218 5 1 31 10 9 309 4 0 84 1 2 112 0 1 935 1 0 23 0 1 270 9 23 231 1 0 3 2 0 33 1 0 52 2 0 13 1 0 27 20 17 25 0 5 7 7 0 31 chain 28632 chr2 243199373 + 52732999 52733306 AluYg6 310 + 0 307 90599 307 chain 72033 chr2 243199373 + 52761771 52762614 L1P1 4361 - 419 1258 47374 275 3 0 156 2 0 6 0 2 223 6 5 172 chain 140627 chr2 243199373 + 52762614 52764176 L1PA3long 6157 + 4592 6153 26049 430 1 0 1131 chain 66141 chr2 243199373 + 52771341 52772446 L1MA1 4479 - 289 1357 50030 19 25 14 6 1 0 9 1 0 37 2 0 25 10 9 97 31 27 88 1 0 12 6 4 17 1 0 21 10 10 40 1 0 16 2 0 25 1 0 51 9 6 76 1 0 68 1 0 124 3 0 23 1 0 4 0 1 45 0 1 12 0 4 36 3 0 12 1 0 89 6 4 36 chain 327678 chr2 243199373 + 52814731 52819258 L1PA8 5853 - 0 4178 12283 88 15 5 19 2 1 61 2 1 70 2 0 44 1 0 43 0 2 279 0 1 231 0 2 252 0 1 96 8 5 318 1 0 189 0 6 83 3 10 40 6 5 7 0 2 63 9 11 264 1 0 23 0 1 416 2 1 331 5 6 118 15 14 199 345 0 57 8 9 447 0 3 12 9 1 146 0 1 189 3 0 5 chain 29023 chr2 243199373 + 52841034 52841439 MER48 407 + 0 407 88888 157 20 0 77 28 50 123 chain 22313 chr2 243199373 + 52865600 52865922 MLT2A1 477 + 0 476 118862 129 0 3 33 8 5 9 1 2 23 0 1 77 6 158 36 chain 34914 chr2 243199373 + 52869677 52870054 L1PA3long 6157 - 13 390 76321 377 chain 445388 chr2 243199373 + 52877063 52882697 HERVL-int 5654 - 0 5654 8890 221 0 17 187 24 9 469 3 0 315 0 2 340 0 1 109 3 2 14 0 2 342 0 1 11 6 7 99 0 11 43 16 5 154 0 1 203 2 3 481 1 15 541 1 3 539 1 5 355 8 0 262 7 13 125 1 0 100 1 0 604 18 15 28 chain 59817 chr2 243199373 + 52912875 52913751 L1PB3 3668 + 2625 3521 52922 42 1 0 11 1 2 97 0 1 210 0 2 8 3 0 81 1 19 120 0 1 71 11 10 15 0 18 57 3 4 79 24 9 18 1 0 3 1 0 18 chain 179691 chr2 243199373 + 52941394 52943357 L1PA3long 6157 + 4194 6157 21020 1963 chain 3708 chr2 243199373 + 52948715 52948780 L1MC4a 1092 - 302 366 211828 35 9 8 21 chain 6396 chr2 243199373 + 52956583 52956678 HSMAR2 1300 - 62 163 182061 75 6 12 14 chain 17522 chr2 243199373 + 52957343 52957527 AluYa5 310 - 1 185 134204 184 chain 31344 chr2 243199373 + 52957846 52958197 L1PA4 6152 - 0 356 81905 168 0 6 86 1 0 96 chain 14665 chr2 243199373 + 52975364 52975741 THE1D 372 + 4 364 142370 64 131 123 47 6 12 24 26 11 79 chain 95374 chr2 243199373 + 52986878 52987962 L1PA4 6152 + 5054 6143 37991 250 0 4 700 0 1 134 chain 41252 chr2 243199373 + 53025850 53026557 L1PA11 4918 + 3946 4629 67594 340 0 5 40 9 10 52 2 1 80 2 0 14 1 0 16 133 107 18 chain 36163 chr2 243199373 + 53069716 53070113 L1PA2 6032 - 0 397 74690 397 chain 8050 chr2 243199373 + 53085520 53085625 L1PA16 3655 + 3363 3468 170759 105 chain 68281 chr2 243199373 + 53133809 53134629 L1PA7 6471 - 839 1662 49131 18 1 0 393 0 4 408 chain 71424 chr2 243199373 + 53134629 53135480 L1PA7 6471 + 5614 6466 47732 89 1 0 604 1 2 12 0 1 144 chain 207652 chr2 243199373 + 53149162 53151453 L1PA3long 6157 + 3852 6142 18664 872 3 2 1416 chain 174662 chr2 243199373 + 53214807 53216766 L1PA3long 6157 - 0 1963 21518 338 0 1 505 6 9 1110 chain 10035 chr2 243199373 + 53220884 53221178 L1PREC2 3366 - 303 557 160406 4 1 0 11 2 0 38 6 4 29 27 14 11 3 0 30 3 1 12 14 9 13 34 26 7 3 0 4 1 0 41 chain 9801 chr2 243199373 + 53270592 53270723 L1PA8 5853 - 25 152 161587 68 1 0 17 1 0 35 2 0 7 chain 119736 chr2 243199373 + 53274017 53275366 L1PA4 6152 - 1601 2950 31137 1349 chain 140452 chr2 243199373 + 53275368 53276950 L1PA4 6152 + 4561 6143 26079 1582 chain 11198 chr2 243199373 + 53286607 53286893 L1MA8 2339 + 2009 2257 155427 40 32 0 9 62 65 38 4 1 36 6 0 59 chain 86553 chr2 243199373 + 53288331 53289397 L1PA7 6471 + 5389 6457 40948 232 1 0 162 3 4 80 1 2 413 2 3 172 chain 141817 chr2 243199373 + 53296369 53298006 L1PA5 6144 + 4504 6142 25857 208 0 1 117 2 1 456 0 1 854 chain 18346 chr2 243199373 + 53307130 53307355 AluSp 311 + 57 282 131941 225 chain 6528 chr2 243199373 + 53308978 53309289 L1MA6 2487 + 2134 2379 181020 59 212 146 40 chain 35535 chr2 243199373 + 53310999 53311565 L1PB2 3958 + 3292 3838 75496 19 2 0 52 11 5 70 2 0 14 4 0 39 0 1 48 21 16 61 1 0 63 1 0 40 0 3 18 8 10 6 4 0 17 2 1 63 chain 32607 chr2 243199373 + 53317853 53318298 MLT2A1 477 - 0 477 79841 20 1 0 36 10 38 209 11 15 16 0 1 142 chain 75383 chr2 243199373 + 53339206 53340252 MER11C 1089 + 7 1063 45830 240 7 16 54 0 4 64 1 0 178 22 15 112 1 5 4 1 0 38 0 1 125 0 1 56 10 9 90 18 19 25 chain 23751 chr2 243199373 + 53347241 53347528 AluSp 311 + 11 303 111770 59 0 5 228 chain 3233 chr2 243199373 + 53370159 53370195 LTR1D 973 + 936 972 220368 36 chain 46013 chr2 243199373 + 53386455 53387011 MER41A 554 + 0 554 62033 93 0 1 324 3 0 136 chain 290299 chr2 243199373 + 53389915 53393602 L1PA8A 6298 + 2230 5924 13999 269 0 2 10 4 2 847 1 0 448 0 1 69 1 0 4 7 9 353 0 1 101 0 1 4 1 0 181 7 11 946 2 1 338 0 2 94 chain 25520 chr2 243199373 + 53421470 53421848 THE1B 368 - 0 366 102143 61 11 1 5 0 2 125 3 2 4 1 0 93 1 0 33 1 6 23 6 0 11 chain 225784 chr2 243199373 + 53440645 53444052 L1PA8 5853 - 0 5452 17539 92 6 5 15 2 1 41 2 0 6 18 23 60 2 0 31 27 26 467 0 2 41 2 2038 49 0 9 9 0 4 56 3 4 154 1 2 151 2 1 185 6 7 137 23 1 104 8 11 141 0 5 8 1 5 55 0 2 162 9 8 562 48 53 114 0 1 240 35 36 12 68 84 21 109 89 122 chain 26956 chr2 243199373 + 53478122 53478459 L1PA7 6471 - 2 342 96423 78 0 3 259 chain 89861 chr2 243199373 + 53485898 53487191 LTR12D 1347 - 4 1347 39698 132 15 12 117 1 0 33 1 0 27 4 0 314 0 18 20 2 18 84 9 40 39 41 0 53 3 4 96 2 38 24 30 34 96 6 0 144 chain 21165 chr2 243199373 + 53489772 53490125 THE1A 353 - 0 353 123329 29 0 2 124 6 5 43 40 41 15 1 0 39 7 8 34 2 0 13 chain 119869 chr2 243199373 + 53490130 53491667 THE1A-int 1579 - 12 1579 31098 192 0 1 379 2 0 195 5 7 346 0 26 127 1 2 48 0 3 121 1 0 120 chain 135388 chr2 243199373 + 53521767 53523938 L1MA2 4263 + 1965 4102 26939 23 8 25 16 14 8 5 0 1 6 0 4 5 0 3 96 0 1 99 39 43 19 1 2 77 0 7 78 0 1 69 0 4 53 8 9 22 7 6 18 14 16 87 1 0 81 15 17 45 5 6 64 38 0 23 24 12 396 0 1 4 1 0 24 3 0 5 0 12 116 1 0 10 6 1 39 1 0 38 1 0 88 1 3 43 27 10 148 24 21 67 19 14 13 4 0 24 0 1 8 chain 191897 chr2 243199373 + 53525131 53527238 L1PA3long 6157 + 4050 6157 19873 2107 chain 32613 chr2 243199373 + 53527255 53527631 L1PA5 6144 + 5761 6138 79831 44 1 2 331 chain 16517 chr2 243199373 + 53536158 53536339 L1PA2 6032 + 5851 6032 136865 181 chain 63960 chr2 243199373 + 53550136 53550833 SVA_C 1631 - 0 744 51025 627 0 1 2 0 46 68 chain 21612 chr2 243199373 + 53554108 53554388 AluY 311 + 25 306 121722 107 13 11 7 0 3 153 chain 9058 chr2 243199373 + 53555987 53556127 MER21A 919 + 21 156 165271 37 0 13 51 18 0 34 chain 8397 chr2 243199373 + 53568561 53568777 L1PREC2 3366 - 416 612 168872 28 70 55 13 3 0 4 1 0 43 8 7 46 chain 52494 chr2 243199373 + 53582067 53582660 L1PA3long 6157 - 8 601 57307 593 chain 24347 chr2 243199373 + 53602301 53602609 L1PA13 3608 - 638 949 107067 300 1 4 7 chain 37218 chr2 243199373 + 53602609 53603339 L1PA13 3608 + 2958 3518 73213 172 2 0 30 1 0 107 8 6 37 141 0 24 1 0 28 1 0 24 1 0 8 1 0 50 15 4 20 1 0 20 24 16 14 chain 15710 chr2 243199373 + 53612644 53612825 L1PA4 6152 + 5959 6141 139234 70 0 1 111 chain 87117 chr2 243199373 + 53614368 53615426 MER11B 1079 - 22 1079 40731 26 0 1 150 0 1 113 6 0 219 6 5 4 0 1 217 0 1 121 1 3 195 chain 97586 chr2 243199373 + 53625770 53626803 L1HS 6032 - 1159 2192 37376 1033 chain 110303 chr2 243199373 + 53626803 53627978 L1HS 6032 + 4858 6032 34127 1022 1 0 152 chain 322095 chr2 243199373 + 53638061 53641847 L1PA5 6144 + 3 6144 12519 117 0 14 931 1 0 59 11 17 164 0 1 530 1 2 68 1 0 400 0 2318 344 5 17 312 0 4 511 0 1 331 chain 11363 chr2 243199373 + 53641851 53641988 THE1B 368 + 169 306 154845 137 chain 4945 chr2 243199373 + 53646829 53646883 L1PA15 4387 - 3957 4011 195751 54 chain 47777 chr2 243199373 + 53651068 53651632 LTR19B 566 - 0 566 60635 52 0 1 216 0 1 296 chain 3846 chr2 243199373 + 53652535 53652591 MLT2C1 407 - 267 320 209705 5 3 0 48 chain 24037 chr2 243199373 + 53682714 53683086 THE1B 368 - 0 368 110128 36 1 0 39 1 0 7 0 1 57 9 4 11 6 5 8 0 2 20 7 6 69 1 0 61 0 5 24 2 0 13 chain 11421 chr2 243199373 + 53700017 53700196 MER67D 511 + 132 330 154601 20 14 33 106 1 0 4 4 5 30 chain 39984 chr2 243199373 + 53709128 53709567 L1PA4 6152 + 5457 5896 69340 439 chain 3059 chr2 243199373 + 53713990 53714052 LTR12C 1709 + 1006 1068 223830 34 16 16 12 chain 41892 chr2 243199373 + 53718853 53719538 L1PA16 3655 + 2945 3619 66768 34 12 21 200 15 19 71 2 0 9 38 35 67 0 2 12 1 2 176 8 0 3 9 0 7 5 0 16 chain 3969 chr2 243199373 + 53720652 53720700 MLT1-int 490 - 366 414 207860 48 chain 29358 chr2 243199373 + 53729501 53729832 L1PA4 6152 - 0 332 87252 113 0 1 218 chain 100773 chr2 243199373 + 53759809 53761008 L1PA7 6471 - 3 1214 36564 597 0 1 160 1 0 6 28 40 407 chain 4296 chr2 243199373 + 53781537 53781587 MER52D 1964 + 1155 1205 203295 50 chain 12540 chr2 243199373 + 53801934 53802133 MER30 238 - 0 232 150079 99 0 1 4 2 23 11 11 0 46 7 29 19 chain 2795 chr2 243199373 + 53813502 53813619 L1MA8 2339 - 8 107 228801 18 0 8 7 60 35 6 1 0 25 chain 541124 chr2 243199373 + 53814170 53820181 L1PA3long 6157 + 4 6152 2645 61 1 7 81 0 1 627 6 134 590 0 2 1718 1 2 14 4 0 2069 0 4 510 1 0 328 chain 23921 chr2 243199373 + 53833396 53833689 AluY 311 + 0 288 110799 133 7 1 16 5 6 132 chain 20525 chr2 243199373 + 53885633 53885975 THE1D 372 - 12 367 125557 122 0 1 42 32 35 11 16 26 15 10 9 94 chain 378282 chr2 243199373 + 53890184 53894812 L1PA7 6471 + 1827 6470 10808 270 5 7 5 2 0 504 3 4 8 3 1 6 0 1 166 1 2 682 2 4 16 2 0 359 0 1 107 0 3 237 0 2 93 1 0 369 0 2 311 5 6 75 0 1 33 6 5 49 3 0 105 0 1 4 1 0 11 1 2 340 0 6 830 1 3 12 chain 7712 chr2 243199373 + 53895364 53895461 LTR70 1284 + 1178 1273 172852 15 1 0 43 1 0 37 chain 4801 chr2 243199373 + 53895510 53895586 L1PB1 5432 + 5346 5419 197347 26 1 0 19 1 0 13 4 3 12 chain 60493 chr2 243199373 + 53908444 53909612 L1MA3 4352 - 1052 1912 52584 48 3 0 134 1 9 9 0 5 368 318 6 117 26 24 65 5 0 48 7 8 19 chain 23852 chr2 243199373 + 53915799 53916080 L1PA7 6471 + 6188 6469 111175 281 chain 19188 chr2 243199373 + 53935181 53935605 MSTA 426 + 0 426 129563 133 41 44 27 7 6 26 113 112 13 0 1 64 chain 2949 chr2 243199373 + 53945825 53945859 U5 65 + 11 45 226083 34 chain 7854 chr2 243199373 + 53948309 53948409 L1PA16 3655 + 382 486 171970 91 0 4 9 chain 7147 chr2 243199373 + 53950481 53950624 L1PB1 5432 - 2 135 176426 6 1 0 4 1 0 16 1 0 13 2 1 20 1 0 24 2 0 14 1 0 5 8 6 24 chain 45031 chr2 243199373 + 53960849 53961362 MER9a3 513 - 0 513 63017 513 chain 180495 chr2 243199373 + 53985685 53987919 HERV17-int 4347 + 13 4343 20943 14 1 0 52 1 0 34 2 0 25 2 1 83 10 3 102 0 430 16 0 4 372 0 1 67 1 0 234 0 9 11 9 1 439 1 0 149 0 1672 226 0 2 383 chain 24504 chr2 243199373 + 53988237 53988551 LTR17 781 + 0 312 107524 61 1 0 118 1 0 133 chain 26086 chr2 243199373 + 54032660 54033044 L1MA2 4263 - 221 601 99683 77 11 9 150 12 9 13 3 4 118 chain 22592 chr2 243199373 + 54050972 54051234 AluSp 311 + 33 295 117616 262 chain 5610 chr2 243199373 + 54066895 54066967 U13_ 108 - 36 108 188979 72 chain 29552 chr2 243199373 + 54084083 54084403 AluYb8 318 - 2 318 86409 184 4 0 132 chain 3525 chr2 243199373 + 54090902 54090971 MER3 215 + 15 87 214958 27 17 20 25 chain 85596 chr2 243199373 + 54105224 54106287 MER11C 1089 + 0 1085 41307 267 0 3 49 1 18 249 12 13 213 0 1 4 1 0 109 2 3 156 chain 24977 chr2 243199373 + 54111343 54111635 AluSc 308 - 6 298 104917 292 chain 15793 chr2 243199373 + 54116366 54116574 MER2 342 - 24 233 138971 52 7 8 149 chain 6964 chr2 243199373 + 54127212 54127404 L1MB5 1630 + 1336 1534 177718 54 1 0 27 87 94 23 chain 12246 chr2 243199373 + 54151762 54151906 L1PA5 6144 - 0 144 151219 144 chain 20775 chr2 243199373 + 54179414 54179682 AluSc 308 + 17 282 124698 92 1 0 114 1 0 34 1 0 25 chain 7867 chr2 243199373 + 54182430 54182584 MER30 238 + 1 196 171888 14 3 21 36 4 5 17 14 38 6 2 0 58 chain 50402 chr2 243199373 + 54188834 54189412 LTR10C 591 - 0 581 58710 280 0 3 298 chain 26571 chr2 243199373 + 54199164 54199458 AluSq4 311 + 0 293 97757 132 1 0 161 chain 29800 chr2 243199373 + 54200475 54200939 LTR7B 505 + 0 505 85431 105 0 10 52 8 46 12 38 31 22 1 3 81 1 0 79 14 13 51 chain 4715 chr2 243199373 + 54207508 54207570 Tigger3b 1229 + 712 774 198338 62 chain 6131 chr2 243199373 + 54208570 54208638 MER51A 677 - 410 478 184176 68 chain 3319 chr2 243199373 + 54216639 54216681 MLT1N2 510 + 0 42 218621 42 chain 3450 chr2 243199373 + 54230733 54230829 L1MC1 2226 - 351 442 216202 21 45 40 30 chain 7925 chr2 243199373 + 54232889 54232988 L1MC1 2226 - 1401 1500 171477 99 chain 3618 chr2 243199373 + 54237643 54237713 L1MA3 4352 + 4258 4325 213373 23 2 1 6 1 0 25 2 1 11 chain 18536 chr2 243199373 + 54242375 54242616 AluSp 311 + 10 253 131399 23 1 0 60 1 4 156 chain 185657 chr2 243199373 + 54250847 54254163 L1PB1 5432 + 2727 5404 20447 114 2 1 87 0 4 86 0 1 83 296 0 177 5 6 214 0 1 129 5 4 86 20 15 179 7 21 56 8 9 154 1 5 247 27 9 117 332 0 77 0 4 8 0 1 81 0 2 65 10 20 352 1 0 2 1 0 12 2 0 3 2 0 8 33 31 22 2 1 14 4 3 43 1 0 15 3 0 15 9 0 15 3 1 5 1 0 14 2 0 24 1 0 34 chain 4844 chr2 243199373 + 54256318 54256380 LTR48B 642 + 571 632 196852 19 1 0 42 chain 137944 chr2 243199373 + 54258265 54259846 L1PA5 6144 - 1 1583 26491 1120 0 1 330 1 0 4 0 1 126 chain 16081 chr2 243199373 + 54259846 54260034 L1PA5 6144 + 4370 4558 137606 188 chain 3229 chr2 243199373 + 54280044 54280078 LTR41B 718 + 0 34 220444 34 chain 37650 chr2 243199373 + 54285747 54286267 LTR19A 502 - 0 496 72621 52 0 1 41 25 7 28 13 7 65 1 0 295 chain 11207 chr2 243199373 + 54299276 54299432 L1MB8 1703 + 73 232 155393 10 1 0 4 1 2 74 0 3 66 chain 168630 chr2 243199373 + 54322030 54324009 SVA_D 2077 - 6 2065 22206 371 0 2 324 49 0 247 0 1 38 0 2 4 0 52 31 0 2 17 1 3 25 0 1 4 11 0 30 3 1 151 0 40 78 0 40 595 chain 6770 chr2 243199373 + 54336250 54336368 L1PB1 5432 + 5030 5134 179175 73 25 11 20 chain 7096 chr2 243199373 + 54336424 54336536 L1PB1 5432 + 5182 5291 176787 31 9 8 16 1 0 44 1 0 10 chain 2001 chr2 243199373 + 54336611 54336632 L1PB1 5432 + 5349 5370 238612 21 chain 2834 chr2 243199373 + 54336633 54336668 L1PB1 5432 + 5370 5404 228158 22 1 0 12 chain 13095 chr2 243199373 + 54344929 54345197 L1PB1 5432 - 11 253 147863 17 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 48 33 13 1 0 10 2 0 35 1 0 17 1 0 40 chain 9819 chr2 243199373 + 54354908 54355132 Ricksha 1077 - 845 1055 161500 84 4 1 28 3 0 7 37 30 26 23 22 12 chain 7146 chr2 243199373 + 54356019 54356169 Ricksha_c 1012 - 787 926 176442 4 1 0 14 13 8 13 1 3 14 3 0 20 10 6 57 chain 4382 chr2 243199373 + 54376043 54376098 MADE1 96 + 0 96 202167 17 0 41 38 chain 31063 chr2 243199373 + 54391853 54392286 L1PA8 5853 - 10 435 82410 81 3 2 19 6 5 49 2 0 7 2 1 27 0 1 44 2 0 43 1 0 82 5 4 60 chain 258809 chr2 243199373 + 54399751 54402754 L1PA6 6164 - 8 3087 15759 84 0 57 137 0 1 4 1 0 324 0 1 232 0 4 132 0 3 129 0 1 193 0 7 472 6 14 520 4 0 310 2 1 453 chain 42004 chr2 243199373 + 54406506 54407021 MER41A 554 - 1 527 66616 48 0 12 115 1 0 351 chain 6494 chr2 243199373 + 54423746 54423827 MER20 218 - 21 104 181306 55 0 2 26 chain 6719 chr2 243199373 + 54428568 54428694 L1MB7 1623 - 602 727 179544 20 13 12 65 7 8 4 1 0 16 chain 8676 chr2 243199373 + 54431429 54431566 MER30 238 + 94 238 167326 19 4 14 58 8 5 48 chain 29369 chr2 243199373 + 54440367 54440845 L1PA15 4387 - 21 496 87212 11 1 0 27 6 1 11 2 0 43 26 23 29 9 8 6 4 0 22 1 0 51 5 4 26 1 0 13 0 14 6 0 2 136 1 0 34 0 1 7 chain 49528 chr2 243199373 + 54457051 54458467 MER4E 760 + 0 760 59367 23 0 1 240 0 1 4 1 0 163 786 129 199 chain 19533 chr2 243199373 + 54479810 54480054 AluY 311 + 52 296 128559 25 6 5 50 0 1 163 chain 36449 chr2 243199373 + 54491148 54491614 LTR12_ 688 - 0 688 74296 80 0 6 68 0 103 22 1 0 205 0 114 90 chain 27828 chr2 243199373 + 54492266 54492635 THE1B 368 - 0 368 93592 175 2 0 20 2 1 126 0 4 29 2 0 13 chain 11433 chr2 243199373 + 54513127 54513267 MER47B 469 - 0 140 154556 140 chain 4491 chr2 243199373 + 54582494 54582545 MER96 175 - 34 85 200890 51 chain 31672 chr2 243199373 + 54646087 54646456 L1PA8A 6298 + 5915 6292 81369 266 0 3 28 0 5 75 chain 51783 chr2 243199373 + 54649151 54649836 LTR12 884 - 15 884 57764 104 0 8 263 3 32 85 2 0 39 1 43 98 0 107 90 chain 10423 chr2 243199373 + 54698031 54698199 MER30 238 + 48 238 158587 60 10 29 16 1 7 9 3 0 69 chain 141190 chr2 243199373 + 54712294 54713864 SVA_D 2077 + 6 2069 25954 15 4 0 16 1 0 690 0 1 110 0 399 66 0 98 668 chain 25708 chr2 243199373 + 54734065 54734432 LTR7B 505 - 64 505 101256 82 1 0 48 1 89 27 34 11 66 0 10 108 chain 38267 chr2 243199373 + 54736243 54736679 HERVH-int 3825 - 0 439 71755 159 0 3 277 chain 7177 chr2 243199373 + 54736858 54736959 MLT1B 390 - 16 114 176226 92 3 0 6 chain 10384 chr2 243199373 + 54738563 54738718 MER1A 529 - 1 165 158768 57 12 15 52 0 6 34 chain 19998 chr2 243199373 + 54745357 54745598 L1PA6 6164 + 5921 6162 127151 241 chain 43709 chr2 243199373 + 54771920 54772432 L1PA6 6164 - 4 516 64555 512 chain 10644 chr2 243199373 + 54772433 54772548 L1PA6 6164 + 5546 5661 157628 115 chain 4803 chr2 243199373 + 54806170 54806249 MADE1 96 - 0 96 197325 47 9 26 23 chain 124137 chr2 243199373 + 54925558 54926965 SVA_C 1631 + 57 1631 29654 122 0 1 461 0 37 85 0 40 35 0 88 29 1 0 48 0 1 113 0 1 513 chain 2835 chr2 243199373 + 54933635 54933667 Charlie7a 264 + 149 181 228154 32 chain 11287 chr2 243199373 + 54945792 54946002 Tigger2a 444 + 8 219 155107 38 51 55 8 3 0 110 chain 4334 chr2 243199373 + 54966322 54966642 Charlie4a 502 - 178 502 202794 20 72 76 39 0 1 6 157 158 6 2 0 18 chain 15252 chr2 243199373 + 55003241 55003427 MER107 203 - 7 193 140625 186 chain 3436 chr2 243199373 + 55193809 55193849 MER5A 189 - 93 133 216459 40 chain 4517 chr2 243199373 + 55245967 55246096 L1MC4 1079 + 1 106 200591 25 56 33 15 1 0 32 chain 11582 chr2 243199373 + 55256152 55256463 MLT1A 405 + 75 394 153964 31 9 12 13 8 6 38 111 114 60 1 5 40 chain 170611 chr2 243199373 + 55301678 55305284 L1PB1 5432 + 2927 5404 21980 324 0 1 320 10 12 131 28 23 11 5 0 6 4 2 452 8 10 88 0 5 57 6 7 72 0 4 30 2 0 64 1 0 80 3 0 79 0 2 24 1036 1 282 0 2 82 120 74 29 9 1 18 2 1 14 2 1 44 13 2 14 2 0 5 26 7 17 26 21 24 1 0 16 6 5 13 chain 3178 chr2 243199373 + 55312349 55312394 MLT2B4 540 + 496 535 221383 6 6 0 33 chain 28209 chr2 243199373 + 55318828 55319179 THE1A 353 - 0 349 92270 155 6 5 83 1 0 106 chain 24514 chr2 243199373 + 55323182 55323475 AluSp 311 + 0 295 107476 26 0 2 267 chain 6480 chr2 243199373 + 55335845 55335938 MADE1 96 + 0 96 181389 47 7 10 39 chain 53629 chr2 243199373 + 55351567 55352442 L1PA14 3548 + 2642 3447 56601 47 1 0 105 1 0 99 0 3 24 1 0 18 2 1 9 1 0 5 2 0 40 25 21 102 8 4 11 2 0 5 2 1 84 2 1 38 45 0 72 1 0 11 5 1 23 17 15 5 1 0 11 1 0 17 1 0 6 0 1 25 chain 24093 chr2 243199373 + 55353219 55353526 AluSp 311 + 2 303 109777 84 6 0 217 chain 9804 chr2 243199373 + 55371032 55371193 L1MB1 2102 + 1895 2049 161574 43 3 1 68 2 0 8 8 6 17 1 0 11 chain 6152 chr2 243199373 + 55371962 55372105 MSTA 426 - 247 408 183966 23 56 74 64 chain 3906 chr2 243199373 + 55376479 55376545 MER5A 189 + 0 75 208760 23 9 18 34 chain 25298 chr2 243199373 + 55385817 55386116 AluSp 311 - 5 303 103237 174 1 0 124 chain 22931 chr2 243199373 + 55410928 55411200 AluSc 308 - 22 294 115955 272 chain 263751 chr2 243199373 + 55426783 55432075 L1MA3 4352 + 0 4092 15497 14 13 12 11 1 0 119 1 0 19 5 0 25 0 4 34 8 13 40 309 0 56 8 10 78 0 15 209 1 0 103 20 18 88 1 0 8 1 0 76 1 3 33 6 3 86 6 4 29 1 0 164 30 46 28 4 0 153 1 0 27 1 0 34 0 3 73 3 4 10 1 0 124 1 3 70 6 10 71 27 25 77 1 2 16 3 2 34 0 1 226 1 0 11 0 1 6 655 21 18 0 4 43 0 1 41 31 35 15 29 1 69 2 0 115 0 1 74 4 3 284 8 9 56 5 6 78 8 7 47 0 1 121 1 0 15 6 7 7 302 0 140 3 0 168 44 77 57 0 2 154 6 7 31 5 9 37 chain 26719 chr2 243199373 + 55432185 55432536 L1PB4 2604 + 2022 2372 97264 262 5 4 84 chain 23339 chr2 243199373 + 55497266 55497543 AluSp 311 - 24 301 113986 277 chain 31346 chr2 243199373 + 55498153 55498967 LTR2B 499 + 9 499 81903 5 1 0 52 3 0 5 1 4 36 0 7 10 392 59 45 0 3 71 0 1 10 1 0 182 chain 76671 chr2 243199373 + 55506406 55507370 LTR5_Hs 974 + 0 974 45135 182 0 5 97 2 3 6 7 0 525 9 16 34 9 7 16 0 6 77 chain 47108 chr2 243199373 + 55507894 55508471 LTR10C 591 - 0 591 61121 57 6 11 11 0 2 213 0 7 290 chain 4242 chr2 243199373 + 55525503 55525553 HY3 101 - 1 51 203974 50 chain 26052 chr2 243199373 + 55555894 55556204 AluSp 311 - 0 310 99819 310 chain 3911 chr2 243199373 + 55578906 55579161 L1MB7 1623 + 1384 1589 208685 36 187 140 6 3 0 23 chain 16439 chr2 243199373 + 55581032 55581279 Tigger3c 601 - 48 294 137096 35 6 1 24 1 0 42 11 17 49 1 0 78 chain 3298 chr2 243199373 + 55584065 55584101 MER3 215 - 87 123 219004 36 chain 23943 chr2 243199373 + 55603975 55604265 AluSg7 307 - 17 305 110661 138 0 3 7 3 0 10 2 0 130 chain 42455 chr2 243199373 + 55621269 55621743 L1PA4 6152 - 204 675 66069 131 3 0 340 chain 19318 chr2 243199373 + 55621743 55621955 L1PA4 6152 + 5940 6152 129182 212 chain 21191 chr2 243199373 + 55626419 55626680 AluSg7 307 + 39 298 123240 85 3 0 77 3 4 93 chain 39120 chr2 243199373 + 55635444 55635990 MER41A 554 + 2 554 70576 53 37 38 375 8 13 73 chain 8502 chr2 243199373 + 55655504 55655612 MER58A 224 - 9 118 168281 95 0 1 13 chain 11562 chr2 243199373 + 55661868 55662020 Tigger1 2417 - 1102 1252 154060 23 2 0 127 chain 553611 chr2 243199373 + 55669242 55675489 L1PA3long 6157 + 0 6157 993 707 0 7 489 0 1 228 0 1 1658 0 1 851 0 3 416 0 4 1415 107 0 376 chain 522500 chr2 243199373 + 55689301 55695438 L1PA6 6164 + 0 6158 4911 509 9 8 275 1 16 152 0 2 28 0 1 462 1 3 151 0 1 409 4 5 312 1 0 864 0 1 297 0 1 206 2 1 629 1 0 37 0 4 269 1 0 550 0 4 118 1 0 509 4 0 323 1 0 11 chain 3862 chr2 243199373 + 55696770 55696840 MER47B 469 - 349 418 209432 17 5 6 13 2 0 33 chain 3092 chr2 243199373 + 55699559 55699614 L1MB5 1630 + 553 617 223064 14 1 6 19 0 5 16 1 0 4 chain 28157 chr2 243199373 + 55723200 55723870 L1PA8A 6298 - 477 825 92440 165 322 0 183 chain 4541 chr2 243199373 + 55727096 55727150 U6 107 + 11 65 200319 54 chain 21007 chr2 243199373 + 55744722 55744977 AluY 311 + 40 293 123884 54 3 0 38 0 1 160 chain 27935 chr2 243199373 + 55757177 55757532 THE1B 368 + 0 368 93223 44 0 15 109 3 1 60 0 1 63 1 0 75 chain 3861 chr2 243199373 + 55757532 55757578 MER5A 189 - 129 175 209441 46 chain 24286 chr2 243199373 + 55786203 55786509 AluSp 311 + 2 307 108728 63 7 8 217 2 0 17 chain 31199 chr2 243199373 + 55786930 55787632 THE1D-int 1627 + 0 401 82165 14 4 6 14 304 0 292 0 1 74 chain 5357 chr2 243199373 + 55789115 55789250 THE1D 372 + 0 153 191472 17 0 1 43 54 71 21 chain 77858 chr2 243199373 + 55796045 55797025 LTR13 1007 + 0 1007 44585 73 2 0 189 0 25 94 4 5 296 1 5 125 0 1 162 3 1 31 chain 14216 chr2 243199373 + 55811506 55811783 L1PB1 5432 - 12 265 143827 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 12 1 0 4 19 9 6 1 0 16 1 0 44 7 5 10 2 1 53 chain 25001 chr2 243199373 + 55827293 55827591 AluSp 311 + 13 311 104771 298 chain 4029 chr2 243199373 + 55847673 55847725 Tigger3c 601 + 483 537 206954 10 0 2 42 chain 142591 chr2 243199373 + 55877270 55878924 SVA_D 2077 + 0 2075 25713 5 2 0 54 8 10 35 0 27 308 0 116 170 0 3 33 3 0 126 0 83 33 0 51 176 1 0 78 0 147 604 2 0 16 chain 18101 chr2 243199373 + 55914366 55914584 AluSc 308 + 72 290 132596 218 chain 23878 chr2 243199373 + 55921866 55922144 AluSp 311 + 11 311 111035 58 0 8 170 0 14 50 chain 29437 chr2 243199373 + 55922998 55923308 AluYb8 318 + 0 310 86913 310 chain 66230 chr2 243199373 + 55932823 55933562 SVA_D 2077 + 804 2077 49992 74 0 535 583 1 0 81 chain 27767 chr2 243199373 + 55935436 55935742 AluYf4 310 - 3 309 93814 306 chain 6046 chr2 243199373 + 55945960 55946066 MER5A 189 + 1 106 184841 16 22 20 27 0 1 41 chain 542525 chr2 243199373 + 55963500 55969526 L1PA3long 6157 - 1 6157 2419 5 0 2 134 0 1 5110 8 136 54 0 7 444 9 0 110 0 1 152 chain 70475 chr2 243199373 + 55974786 55976029 L1PA11 4918 + 3405 4331 48178 149 1 0 137 1 2 182 0 1 191 327 0 147 0 3 76 1 3 17 0 4 14 chain 35184 chr2 243199373 + 55977400 55977863 Tigger1 2417 + 1536 2009 75936 194 0 7 57 0 4 67 9 8 136 chain 167208 chr2 243199373 + 56000065 56001865 SVA_F 1814 - 0 1814 22367 637 1 0 39 0 1 132 1 0 42 0 15 948 chain 546722 chr2 243199373 + 56015255 56021391 L1PA4 6152 - 1 6146 1862 149 0 1 699 0 4 534 0 1 2801 0 1 158 1 0 570 0 1 191 0 2 147 0 1 311 1 0 574 chain 29501 chr2 243199373 + 56022276 56022598 AluYb8 318 + 0 318 86635 126 4 0 192 chain 6175 chr2 243199373 + 56023513 56023884 L1PA15 4387 + 3567 3935 59506 140 0 2 104 2 0 15 4 0 42 0 4 16 6 4 38 1 0 3 chain 60386 chr2 243199373 + 56024287 56025256 L1PB1 5432 + 4489 5423 52639 61 1 0 75 1 2 5 4 0 451 33 31 24 2 1 5 1 0 9 10 6 9 2 0 52 2 1 15 1 0 45 0 3 10 4 2 6 1 0 11 9 0 10 35 30 8 1 0 9 1 0 22 1 0 12 1 0 14 1 0 5 chain 6275 chr2 243199373 + 56026099 56026476 L1PA15 4387 + 3935 4303 59506 40 1 0 40 7 9 60 21 20 27 1 0 54 1 0 16 4 0 16 1 0 49 6 4 33 chain 538573 chr2 243199373 + 56041167 56047277 L1PA4 6152 + 0 6148 3057 127 0 14 751 0 1 341 0 1 726 0 1 466 0 1 351 0 4 151 8 14 31 0 1 194 0 1 596 0 1 36 3 0 129 0 1 1343 0 4 17 1 5 695 0 1 144 chain 49499 chr2 243199373 + 56054501 56055183 LTR8 732 - 17 721 59387 25 3 5 27 0 4 116 16 12 75 16 25 248 0 1 138 0 9 14 0 1 4 chain 517818 chr2 243199373 + 56058678 56064814 L1PA6 6164 - 8 6164 5392 131 2 0 5 2 5 23 0 2 681 0 1 47 0 1 530 1 0 94 0 1 263 0 4 154 0 1 499 1 2 522 0 1 4 0 1 857 3 5 108 0 2 493 0 1 256 0 1 174 31 32 287 2 1 347 0 1 106 0 1 316 3 2 194 chain 20000 chr2 243199373 + 56065156 56065491 L1PA15 4387 + 4030 4356 127149 9 0 3 62 1 0 27 1 0 53 2 1 21 4 0 10 2 1 54 4 0 24 0 6 13 3 1 14 5 0 7 1 2 18 chain 4089 chr2 243199373 + 56074474 56074526 MER101-int 1169 - 483 537 206094 43 0 2 9 chain 3194 chr2 243199373 + 56081785 56081824 MADE1 96 + 56 96 221033 24 0 1 15 chain 29034 chr2 243199373 + 56083539 56083843 AluYa5 310 - 6 310 88834 304 chain 27029 chr2 243199373 + 56122679 56122975 AluYf4 310 - 13 310 96191 89 0 1 207 chain 6327 chr2 243199373 + 56171115 56171219 L1PB1 5432 - 5 101 182571 5 2 0 4 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 chain 73079 chr2 243199373 + 56182740 56183575 L1PA4 6152 - 13 860 46992 22 9 0 7 0 9 191 0 12 606 chain 22125 chr2 243199373 + 56183575 56183820 L1PA4 6152 + 5050 5295 118888 245 chain 502768 chr2 243199373 + 56286836 56293138 L1PA7 6471 - 4 6466 6681 8 5 0 150 11 12 54 0 1 391 0 1 157 0 28 362 0 1 67 5 21 647 0 3 562 17 16 483 3 0 310 38 30 63 0 4 232 0 101 100 0 11 8 1 2 283 0 1 5 1 0 47 6 7 719 0 1 62 0 1 5 1 0 335 0 1 101 0 1 56 0 1 123 3 4 217 0 3 664 chain 222277 chr2 243199373 + 56306459 56309186 L1PA8A 6298 + 3544 6292 17740 54 12 13 255 0 6 33 5 7 1299 1 2 276 3 2 172 0 2 114 0 9 395 0 1 108 chain 22693 chr2 243199373 + 56314563 56314832 L1PA4 6152 - 0 268 117107 260 1 0 8 chain 514365 chr2 243199373 + 56319715 56325845 L1PA5 6144 + 0 6143 5737 135 4 30 636 10 27 11 5 8 7 20 0 315 9 0 770 1 0 253 2 4 1683 5 4 304 2 0 157 0 4 435 0 2 78 10 0 1118 16 16 133 1 3 10 chain 24824 chr2 243199373 + 56332814 56333217 MSTA 426 - 0 426 105742 10 0 1 98 1 0 4 0 4 52 27 25 26 2 1 24 2 1 28 8 9 15 7 29 99 chain 3725 chr2 243199373 + 56345123 56345170 MER5A 189 + 113 159 211550 17 1 0 29 chain 532635 chr2 243199373 + 56364293 56370411 L1PA4 6152 - 6 6144 3895 9 0 5 128 8 13 930 1 0 44 6 14 803 0 1 1936 0 2 136 0 1 937 7 5 941 6 7 226 chain 11388 chr2 243199373 + 56374108 56374265 MER30 238 + 59 238 154752 47 4 0 6 3 26 58 0 3 39 chain 41896 chr2 243199373 + 56385774 56386420 HUERS-P3b-int 2065 + 1402 2029 66760 69 6 5 39 16 15 71 7 5 8 1 0 25 1 0 57 1 0 32 3 1 72 2 0 19 4 1 61 5 1 58 1 0 88 chain 231947 chr2 243199373 + 56388948 56391551 L1PA4 6152 - 9 2623 17201 145 1 2 688 0 4 592 0 1 359 0 4 148 0 1 670 chain 21009 chr2 243199373 + 56393155 56393418 L1PA6 6164 + 5894 6162 123878 196 1 0 54 0 6 12 chain 134442 chr2 243199373 + 56399824 56401286 L1PA3long 6157 - 15 1478 27120 169 0 1 1293 chain 97764 chr2 243199373 + 56401286 56402361 L1PA3long 6157 + 3598 4672 37316 1033 1 0 41 chain 9289 chr2 243199373 + 56455361 56455469 L1PA4 6152 + 6039 6146 164114 4 1 0 103 chain 27900 chr2 243199373 + 56479676 56480014 L1PA7 6471 - 1 334 93368 8 3 0 147 7 5 173 chain 10995 chr2 243199373 + 56491037 56491200 MER30 238 - 0 176 156222 39 3 0 72 4 0 7 6 26 32 chain 16454 chr2 243199373 + 56528843 56529086 L1PA8 5853 + 5593 5849 137052 15 2 0 67 7 6 16 1 2 36 7 6 18 0 16 74 chain 301493 chr2 243199373 + 56546981 56550424 L1PA5 6144 + 2688 6129 13345 488 1 0 1041 2 0 22 0 1 1889 chain 110333 chr2 243199373 + 56577989 56579191 L1PA3long 6157 - 0 1203 34112 419 0 1 783 chain 14297 chr2 243199373 + 56616018 56616363 L1PB1 5432 - 12 318 143572 16 6 5 8 1 0 21 1 0 24 40 27 20 1 0 6 12 0 13 2 1 22 1 0 21 2 1 16 1 0 50 3 1 9 2 0 3 2 0 12 1 0 4 0 1 25 chain 8779 chr2 243199373 + 56616410 56616521 MER66B 489 - 295 405 166770 96 1 0 14 chain 10139 chr2 243199373 + 56632780 56632889 L1PA4 6152 + 6042 6151 159904 109 chain 10375 chr2 243199373 + 56638871 56639052 L1PB4 2604 + 2307 2481 158805 40 31 26 10 2 0 98 chain 502617 chr2 243199373 + 56648203 56654334 L1PA4 6152 + 10 6146 6689 111 7 21 425 28 29 149 0 1 430 9 0 559 0 2 340 11 9 234 2 1 252 0 3 161 0 5 435 1 0 939 0 2 115 1 0 116 0 1 315 0 1 253 1 2 63 0 5 95 3 0 144 19 5 381 0 1 423 13 12 96 chain 82157 chr2 243199373 + 56663161 56664062 L1PA2 6032 - 1 903 42701 852 1 2 48 chain 3489 chr2 243199373 + 56669937 56669980 L1MA5 2750 - 120 163 215529 43 chain 8279 chr2 243199373 + 56768037 56768127 L1PA5 6144 + 6041 6131 169517 90 chain 61560 chr2 243199373 + 56773403 56774103 L1PA4 6152 + 5440 6141 52088 565 1 0 4 0 1 28 0 1 102 chain 549975 chr2 243199373 + 56778734 56784876 L1PA3long 6157 - 0 6153 1451 2394 0 1 3228 0 10 520 chain 13986 chr2 243199373 + 56796334 56796535 MER30 238 - 6 238 144624 42 3 0 32 15 49 109 chain 19399 chr2 243199373 + 56821011 56821231 L1PA4 6152 - 867 1087 128951 220 chain 50192 chr2 243199373 + 56821231 56821784 L1PA4 6152 + 5282 5835 58875 553 chain 471397 chr2 243199373 + 56825519 56834094 L1PA6 6164 - 2 6164 7993 13 3 0 133 2 1 21 1 2 355 0 1 317 1 5 51 0 1 894 1 9 103 2699 0 378 0 1 116 0 242 328 0 1 410 4 5 449 0 1 284 1 0 390 0 12 181 1 2 382 0 1 8 1 0 138 0 4 102 0 17 207 0 4 24 1 0 120 9 1 271 8 9 168 chain 89906 chr2 243199373 + 56827440 56828492 L1PA4 6152 - 0 1052 39682 141 8 8 903 chain 16914 chr2 243199373 + 56828492 56828691 L1PA4 6152 + 3477 3680 135366 133 0 4 66 chain 124958 chr2 243199373 + 56828691 56830112 L1PA4 6152 + 3681 5102 29404 1421 chain 22464 chr2 243199373 + 56844048 56844435 MLT2A2 560 + 0 518 118173 168 5 10 15 34 34 16 16 23 35 3 112 45 0 5 38 0 5 12 chain 440878 chr2 243199373 + 56844697 56850684 HERVL-int 5654 + 0 5654 9031 178 0 6 112 4 0 823 1 2 5 1 0 57 30 5 536 0 2 176 3 5 31 1 0 4 0 1 17 3 1 232 22 13 190 8 9 34 20 0 641 0 3 4 1 0 71 0 1 355 11 40 264 7 8 17 0 1 70 0 4 595 0 1 38 1 0 753 0 8 7 12 4 43 5 6 31 323 0 250 chain 29649 chr2 243199373 + 56850125 56850434 AluYk12 309 - 0 309 86072 309 chain 536728 chr2 243199373 + 56858378 56864527 L1PA4 6152 - 6 6152 3349 2170 0 3 369 2 1 94 1 0 68 2 1 275 1 0 963 1 3 14 0 1 947 0 1 202 3 1 347 10 13 97 1 0 116 6 0 460 chain 79421 chr2 243199373 + 56884358 56885265 L1P1 4361 - 1198 2107 43781 436 0 1 418 0 1 53 chain 99680 chr2 243199373 + 56885265 56886406 L1PA4 6152 + 5012 6151 36860 1087 0 1 42 1 0 4 2 0 5 chain 235830 chr2 243199373 + 56887438 56890064 L1PA3long 6157 - 0 2624 16987 5 2 0 2619 chain 174358 chr2 243199373 + 56890064 56891989 L1HS 6032 + 1452 3377 21524 1925 chain 12488 chr2 243199373 + 56904800 56904964 THE1D 372 + 0 155 150304 52 9 0 103 chain 20460 chr2 243199373 + 56904979 56905274 L1PA8 5853 - 0 291 125730 93 1 0 17 1 0 27 0 2 18 9 8 9 1 0 69 2 0 48 chain 46854 chr2 243199373 + 56909786 56910288 L1HS 6032 - 4288 4790 61100 502 chain 85969 chr2 243199373 + 56910288 56911210 L1PA2 6032 + 5109 6031 41165 922 chain 32097 chr2 243199373 + 56946294 56946647 MER9a1 513 + 160 513 80696 353 chain 231719 chr2 243199373 + 56947992 56950838 HERVK9-int 4720 + 58 4715 17218 66 2 0 32 8 7 198 0 1 337 1 0 306 1 2 340 0 3 146 0 924 389 0 879 66 0 1 31 0 3 598 3 1 6 0 2 9 0 3 307 chain 43893 chr2 243199373 + 56950843 56951353 MER9a1 513 + 0 513 64341 199 0 3 311 chain 146506 chr2 243199373 + 56951360 56953041 L1PA5 6144 - 330 2008 25090 160 0 2 377 0 4 404 10 0 209 0 1 29 1 0 338 0 1 153 chain 69647 chr2 243199373 + 56953041 56961844 L1PA5 6144 + 3346 6137 48550 336 1 0 91 0 1 268 1 0 86 7793 1782 227 chain 9988 chr2 243199373 + 56957583 56957911 L1MA6 2487 + 2138 2404 160639 5 0 3 72 42 26 22 118 73 37 3 0 22 1 0 6 chain 28001 chr2 243199373 + 56961301 56961617 L1PA5 6144 - 378 694 92997 316 chain 6791 chr2 243199373 + 56972774 56972976 L1MA6 2487 - 83 235 179017 26 3 0 39 88 44 4 1 0 14 2 0 25 chain 148883 chr2 243199373 + 56986850 56988682 L1PA7 6471 + 4641 6466 24773 509 29 24 180 1 0 267 2 1 672 23 23 149 chain 13357 chr2 243199373 + 56998985 56999150 MLT2A1 477 - 94 258 146858 60 1 0 104 chain 183541 chr2 243199373 + 57003010 57005124 L1P1 4361 - 2246 4360 20622 2114 chain 195737 chr2 243199373 + 57017644 57019812 L1PA3long 6157 + 3982 6155 19525 1962 0 3 36 0 2 170 chain 438950 chr2 243199373 + 57043591 57049843 L1PA8 5853 + 50 5847 9083 21 2 0 11 1 0 13 49 13 187 40 36 42 1 0 392 313 1 79 0 1 299 1 0 24 5 6 519 22 22 236 5 7 58 2 1 15 1 0 23 7 6 107 0 8 290 0 1 437 1 0 91 0 1 84 0 1 64 5 8 66 0 1 173 2 1 195 1 2 363 3 1 7 0 2 137 1 7 106 4 3 119 1 2 22 1 3 143 0 1 4 0 1 68 21 6 91 1 5 70 107 0 60 0 1 192 0 1 77 2 3 454 1 0 23 1 0 46 2 0 69 1 0 20 18 17 24 2 1 19 3 2 85 chain 3708 chr2 243199373 + 57048702 57048743 L1PA8 5853 + 4709 4750 211825 41 chain 29170 chr2 243199373 + 57056881 57057189 AluYb8 318 + 0 308 88198 308 chain 26532 chr2 243199373 + 57067436 57067727 L1PA3long 6157 - 0 291 97925 291 chain 180465 chr2 243199373 + 57093521 57096170 L1PA7 6471 + 4111 6470 20945 560 5 7 130 0 2 181 0 2 527 0 1 18 4 5 50 0 5 22 0 3 76 0 2 8 4 5 86 304 0 82 7 4 85 1 2 485 2 0 7 1 0 4 chain 4686 chr2 243199373 + 57114451 57114508 MER89 557 + 500 557 198682 57 chain 167745 chr2 243199373 + 57119990 57121888 L1PA4 6152 - 9 1913 22312 544 0 8 141 0 1 143 4 0 57 1 0 754 0 1 90 0 1 164 chain 4868 chr2 243199373 + 57132260 57132346 MER2 342 - 26 114 196608 17 4 5 12 4 5 49 chain 69179 chr2 243199373 + 57141010 57141876 L1PA7 6471 - 3402 4243 48727 187 9 0 241 15 0 376 1 0 37 chain 278524 chr2 243199373 + 57141878 57145232 L1PA7 6471 + 3088 6457 14720 184 2 1 200 4 0 11 0 2 401 0 1 886 6 9 21 0 2 389 0 1 126 0 1 179 0 2 98 0 4 8 0 3 123 0 1 716 chain 167664 chr2 243199373 + 57185377 57187534 L1PA8 5853 - 0 2117 22320 68 0 1 24 1 0 19 2 1 45 20 17 69 2 0 41 8 7 554 2 0 8 7 4 285 10 0 4 21 0 342 0 2 27 0 1 264 1 2 50 1 0 282 chain 23531 chr2 243199373 + 57189051 57189400 THE1B 368 + 8 367 112956 161 1 0 19 20 21 4 0 1 18 3 11 48 1 2 74 chain 23040 chr2 243199373 + 57203764 57204120 L1PA8 5853 - 0 349 115447 83 0 3 7 1 0 16 1 0 50 1 0 15 2 1 19 3 1 46 15 12 36 1 0 60 chain 241013 chr2 243199373 + 57207953 57211335 HERVK22-int 3844 - 378 3843 16721 25 73 78 7 1 0 10 21 13 12 42 29 45 1 0 10 4 0 16 1 2 10 17 15 17 1 0 35 1 0 18 7 5 72 1 0 666 4 0 24 1 4 4 0 1 5 1 0 117 0 110 34 0 12 278 9 8 95 2 0 7 1 3 403 14 7 284 25 21 686 0 4 24 1 2 198 10 7 42 chain 28157 chr2 243199373 + 57220022 57220322 AluYa5 310 - 2 302 92438 300 chain 17698 chr2 243199373 + 57227393 57227690 THE1C 375 - 77 375 133708 67 50 46 4 0 1 37 10 14 129 chain 177476 chr2 243199373 + 57243640 57245595 L1PA3long 6157 - 0 1957 21210 676 0 1 264 0 1 1015 chain 91964 chr2 243199373 + 57245595 57246614 L1PA3long 6157 + 3191 4209 38871 694 1 0 324 chain 43941 chr2 243199373 + 57248397 57248943 L1PA6 6164 - 3 552 64274 7 2 0 287 1 5 25 5 6 219 chain 41256 chr2 243199373 + 57249264 57249745 LTR2C 499 + 0 482 67586 440 0 1 41 chain 21869 chr2 243199373 + 57249762 57250067 L1P2 5180 + 430 735 120753 27 6 5 53 1 0 21 0 1 174 3 4 20 chain 17768 chr2 243199373 + 57253889 57254165 THE1B 368 - 77 368 133518 42 17 25 10 8 13 32 1 0 99 2 4 47 0 1 18 chain 61234 chr2 243199373 + 57260265 57261001 L1PA7 6471 - 6 741 52240 8 1 0 727 chain 3111 chr2 243199373 + 57290539 57290572 L1PA3long 6157 + 6109 6142 222742 33 chain 143749 chr2 243199373 + 57293649 57295346 L1P2 5180 - 804 3627 25527 18 0 4 83 0 3 996 0 3 80 1 0 13 1 0 21 0 1115 102 0 1 70 2 3 68 0 1 242 chain 4095 chr2 243199373 + 57308112 57308194 L1MDa 1598 - 122 198 206004 8 3 0 10 8 6 9 1 0 43 chain 13995 chr2 243199373 + 57316343 57316515 L1PA4 6152 - 0 177 144593 6 0 5 166 chain 23350 chr2 243199373 + 57318829 57319086 AluYh9 303 - 0 254 113922 177 3 0 77 chain 44063 chr2 243199373 + 57323612 57324119 L1PA4 6152 - 0 498 64145 361 9 0 137 chain 3157 chr2 243199373 + 57332872 57332914 MADE1 96 + 0 42 221777 7 0 1 30 1 0 4 chain 10778 chr2 243199373 + 57333081 57333222 MER1B 344 + 116 253 157082 100 4 0 37 chain 30427 chr2 243199373 + 57342738 57343056 AluYb8 318 - 0 318 83617 318 chain 27707 chr2 243199373 + 57376844 57377151 AluYk11 308 + 0 307 94016 43 0 2 194 2 0 68 chain 9135 chr2 243199373 + 57406423 57406559 L1MA2 4263 - 169 295 164884 19 1 0 17 10 1 89 chain 38532 chr2 243199373 + 57419397 57419868 LTR7Y 441 + 0 441 71394 165 31 0 158 0 1 117 chain 18745 chr2 243199373 + 57419868 57420070 HERVH-int 3825 + 0 202 130837 202 chain 38532 chr2 243199373 + 57420160 57420631 LTR7Y 441 + 0 441 71393 165 31 0 158 0 1 117 chain 286466 chr2 243199373 + 57420631 57424125 HERVH-int 3825 + 0 3825 14261 489 2 0 11 37 31 39 1 0 9 2 1 21 0 13 5 1 0 9 15 12 17 11 72 20 0 1 13 0 2 14 0 3 51 0 3 618 0 2 229 4 31 299 5 15 235 0 1 35 0 1 768 9 11 39 8 218 48 0 3 203 3 8 118 0 1 106 chain 39749 chr2 243199373 + 57425389 57425831 LTR7Y 441 + 0 441 69687 386 5 4 51 chain 31728 chr2 243199373 + 57452399 57452835 LTR7B 505 - 16 505 81279 237 39 61 67 0 31 93 chain 25032 chr2 243199373 + 57454376 57454764 LTR7 482 + 0 470 104625 31 46 84 85 1 11 13 8 40 126 0 2 78 chain 76707 chr2 243199373 + 57454832 57455763 L1PA5 6144 + 5197 6130 45118 78 0 1 704 9 10 140 chain 265221 chr2 243199373 + 57456710 57460065 HERVH-int 3825 + 110 3825 15430 223 1 0 31 15 16 93 13 14 12 0 4 32 1 0 35 1 0 7 1 0 17 0 150 12 0 1 22 1 0 186 0 9 402 1 0 52 10 1 7 1 0 136 5 0 328 0 1 39 15 7 52 1 5 82 4 9 114 0 1 25 0 2 66 0 1 25 1 0 791 8 218 487 chain 23323 chr2 243199373 + 57461981 57462340 LTR7 482 + 0 474 114068 63 0 89 72 8 40 21 22 21 4 1 0 26 8 4 134 chain 132286 chr2 243199373 + 57467905 57469567 L1PA8 5853 + 4196 5853 27565 18 0 4 534 2 0 258 2 0 554 1 0 45 2 0 70 1 0 12 1 0 49 2 1 106 0 1 5 chain 7723 chr2 243199373 + 57471155 57471245 L1PA6 6164 + 6071 6161 172763 90 chain 97858 chr2 243199373 + 57490622 57491920 L1PA8 5853 + 4567 5853 37314 443 5 3 551 1 0 44 2 0 79 2 1 52 2 1 10 11 9 68 3 0 25 chain 170320 chr2 243199373 + 57498001 57500000 L1PA5 6144 - 4 2015 22012 138 0 8 6 9 1 693 1 0 147 0 5 69 1 2 94 0 1 482 1 5 8 0 2 350 chain 325142 chr2 243199373 + 57500001 57504086 L1P2 5180 - 1039 5178 12384 958 1 0 672 0 1 443 18 23 360 0 2 240 1 0 185 6 8 291 1 26 134 0 15 43 1 0 4 0 1 18 1 0 186 7 7 9 1 0 8 1 0 243 18 17 52 41 52 20 12 11 110 chain 326548 chr2 243199373 + 57509595 57513210 L1PA3long 6157 + 2130 5742 12321 567 1 0 104 4 0 417 0 1 1690 0 1 832 chain 12620 chr2 243199373 + 57530548 57530780 L1MA5A 2387 + 2101 2296 149774 7 1 0 47 2 0 26 2 0 33 38 8 8 2 0 66 chain 249148 chr2 243199373 + 57533698 57536482 L1PA4 6152 + 3358 6151 16303 2330 0 5 225 0 4 229 chain 53145 chr2 243199373 + 57547512 57548218 L1PA8A 6298 - 377 1076 56929 226 24 25 97 1 0 83 2 1 49 0 1 49 5 0 34 3 0 61 10 11 62 chain 28150 chr2 243199373 + 57548218 57548581 L1PA8A 6298 + 5923 6290 92463 83 0 2 72 6 8 202 chain 127165 chr2 243199373 + 57553068 57554506 L1PA5 6144 + 4698 6136 28776 600 2 1 5 0 1 464 2 1 40 0 1 325 chain 46493 chr2 243199373 + 57562258 57562916 LTR12C 1709 + 1124 1709 61607 91 44 13 114 37 0 115 5 1 160 8 7 84 chain 94024 chr2 243199373 + 57579976 57581336 L1PA8 5853 - 4 1460 38344 89 1 0 2 132 0 17 2 1 50 1 0 11 10 9 37 1 234 369 0 1 22 2 0 535 0 1 8 1 0 70 chain 27821 chr2 243199373 + 57597497 57597787 AluYa5 310 - 0 290 93628 290 chain 10154 chr2 243199373 + 57598393 57598525 MER85 139 - 0 133 159829 29 5 3 81 0 3 17 chain 53037 chr2 243199373 + 57608589 57609167 L1PA2 6032 + 5450 6029 56994 436 0 1 142 chain 3368 chr2 243199373 + 57624555 57624610 MER52A 1651 - 811 866 217709 23 4 5 21 1 0 6 chain 545914 chr2 243199373 + 57645845 57651854 L1PA2 6032 + 0 6025 1955 137 1 4 566 0 7 1204 0 1 1224 0 2 506 1 0 1525 0 4 845 chain 16434 chr2 243199373 + 57655713 57655910 L1PA5 6144 + 5942 6132 137108 45 7 0 145 chain 27806 chr2 243199373 + 57658316 57658611 AluYb8 318 - 3 298 93675 295 chain 22198 chr2 243199373 + 57721079 57721735 THE1B 368 + 0 368 119361 40 0 15 107 312 0 10 1 0 26 35 45 125 chain 26729 chr2 243199373 + 57737936 57738304 THE1C 375 + 0 375 97228 24 5 10 135 1 2 5 0 1 84 1 2 86 1 0 26 chain 100532 chr2 243199373 + 57783382 57784483 L1PA3long 6157 + 5051 6157 36621 104 0 5 997 chain 236162 chr2 243199373 + 57786115 57788698 L1PA3long 6157 + 3559 6142 16969 2583 chain 12873 chr2 243199373 + 57801875 57802036 Tigger3a 397 - 94 255 148738 161 chain 486140 chr2 243199373 + 57814204 57819566 L1PA3long 6157 + 662 6152 7518 114 0 128 412 2 1 68 0 1 4766 chain 3745 chr2 243199373 + 57823124 57823181 L1MA6 2487 - 94 148 211244 16 4 1 37 chain 68832 chr2 243199373 + 57832639 57833483 L1PA8A 6298 - 1530 2371 48883 591 3 0 250 chain 123788 chr2 243199373 + 57833498 57835020 L1PA8A 6298 + 4760 6291 29777 397 0 1 331 6 11 172 5 8 611 chain 537571 chr2 243199373 + 57835982 57841975 L1PA3long 6157 + 10 6152 3222 142 0 1 588 0 1 34 0 128 77 0 8 858 0 4 351 4 8 2833 0 1 340 1 0 374 0 3 391 chain 3411 chr2 243199373 + 57867539 57867575 MER3 215 - 142 178 216909 36 chain 37840 chr2 243199373 + 57873083 57873501 L1PA2 6032 - 0 417 72349 20 1 0 397 chain 27634 chr2 243199373 + 57873501 57873803 L1PA2 6032 + 5304 5606 94252 302 chain 59981 chr2 243199373 + 57874416 57875397 L1PB1 5432 - 30 989 52837 11 1 0 21 2 1 19 6 4 14 9 6 17 33 22 6 1 0 44 1 0 16 2 1 51 2 0 11 16 11 12 1 0 21 5 0 7 6 13 279 1 3 6 0 2 6 1 2 88 1 0 87 11 12 166 chain 64285 chr2 243199373 + 57875397 57876243 L1PA8 5853 - 6 844 50886 87 3 2 15 1 0 36 16 14 14 1 0 71 4 2 42 1 0 555 chain 28048 chr2 243199373 + 57882357 57882715 LTR27 711 - 354 711 92832 90 1 0 267 chain 16163 chr2 243199373 + 57887030 57887346 L1PA15 4387 - 21 322 137864 10 1 0 24 10 6 11 3 1 19 5 6 16 9 6 22 0 2 26 14 9 23 1 0 55 1 0 26 2 1 38 chain 52763 chr2 243199373 + 57895712 57896344 L1PA7 6471 + 5814 6452 57155 602 1 8 23 1 0 5 chain 45120 chr2 243199373 + 57914895 57915408 MER9a2 513 + 0 513 62912 513 chain 22190 chr2 243199373 + 57921628 57921889 L1PA4 6152 + 5888 6152 119394 247 1 4 13 chain 39273 chr2 243199373 + 57927118 57927615 LTR3B_ 500 + 0 496 70364 299 5 4 31 0 3 9 3 0 150 chain 7334 chr2 243199373 + 57957597 57957751 L1PA13 3608 - 120 269 175198 16 5 4 20 2 0 4 2 0 20 18 22 6 2 0 6 1 0 34 1 0 17 chain 17091 chr2 243199373 + 57961639 57961990 THE1B 368 - 20 368 135347 36 7 6 28 2 3 32 79 75 45 15 16 107 chain 35232 chr2 243199373 + 57963635 57964143 MLT2A2 560 - 0 560 75880 54 0 1 4 1 0 84 0 11 66 0 32 82 30 31 15 7 15 165 chain 30375 chr2 243199373 + 58016167 58016728 L1MA1 4479 - 289 822 83726 14 1 0 4 6 0 13 4 1 6 1 0 10 1 0 37 2 0 27 1 0 110 25 21 84 0 4 13 4 0 6 1 0 14 11 10 52 15 9 16 2 0 22 5 4 41 0 2 13 chain 324586 chr2 243199373 + 58054759 58058943 L1P3 4156 + 0 4099 12414 251 1 0 69 1 0 89 48 15 173 25 26 155 0 1 486 0 2 7 2 0 31 0 7 355 33 20 16 5 6 41 1 0 41 0 2 294 0 4 72 0 5 465 3 0 277 0 1 371 0 1 65 6 0 12 11 10 20 0 1 94 44 0 9 5 0 74 0 3 207 10 5 306 0 1 9 chain 3320 chr2 243199373 + 58058283 58058318 L1P3 4156 + 3446 3481 218568 35 chain 8410 chr2 243199373 + 58058943 58059033 L1PA5 6144 + 6038 6128 168789 90 chain 10505 chr2 243199373 + 58064057 58064231 MER30 238 + 36 222 158227 71 2 11 35 1 7 20 13 10 32 chain 19609 chr2 243199373 + 58074232 58074475 AluSp 311 + 65 303 128363 226 5 0 12 chain 8653 chr2 243199373 + 58095824 58096069 L1MA8 2339 + 2029 2265 167456 54 20 18 16 5 2 20 32 29 28 6 0 22 22 28 11 1 0 8 chain 7207 chr2 243199373 + 58179280 58179391 Tigger1 2417 + 2256 2386 176025 30 0 1 47 13 31 21 chain 23487 chr2 243199373 + 58194243 58194513 L1PA7 6471 + 6194 6464 113188 270 chain 4044 chr2 243199373 + 58202509 58202558 MLT1E2 623 - 0 49 206748 49 chain 53564 chr2 243199373 + 58205857 58206536 L1PA8A 6298 - 26 692 56636 260 27 14 392 chain 28715 chr2 243199373 + 58219667 58219970 AluYb8 318 - 15 318 90275 303 chain 22692 chr2 243199373 + 58239270 58239533 MER41A 554 + 290 554 117118 51 1 2 211 chain 27866 chr2 243199373 + 58240724 58241017 AluYd8 298 + 0 293 93470 293 chain 30406 chr2 243199373 + 58255676 58256018 L1PA5 6144 + 5789 6131 83673 342 chain 20838 chr2 243199373 + 58265225 58265551 THE1D 372 + 0 368 124494 53 9 13 6 4 0 93 25 37 26 0 28 48 0 2 62 chain 5767 chr2 243199373 + 58272059 58272182 MER20 218 + 117 213 187461 41 29 0 4 0 1 18 6 7 25 chain 176463 chr2 243199373 + 58319814 58321785 L1PA5 6144 - 14 1993 21307 1788 3 7 116 0 4 64 chain 27767 chr2 243199373 + 58340566 58340995 LTR7Y 441 - 0 441 93812 197 69 86 53 17 11 23 0 1 70 chain 288694 chr2 243199373 + 58342251 58345821 HERVH-int 3825 - 0 3814 14108 225 3 8 123 2 1 130 8 218 39 12 13 4 0 1 657 0 3 5 3 0 373 0 10 299 7 33 21 5 9 211 0 1 466 5 6 77 4 5 106 0 3 9 0 2 12 0 2 7 1 0 46 3 2 26 3 41 13 1 14 24 65 0 10 1 0 38 5 0 521 chain 28702 chr2 243199373 + 58345832 58346265 LTR7Y 441 - 0 441 90320 83 1 2 112 68 84 57 9 0 103 chain 5735 chr2 243199373 + 58360829 58360910 Tigger4a 237 - 26 108 187800 27 6 7 48 chain 29799 chr2 243199373 + 58361464 58361775 AluYb8 318 + 0 311 85434 311 chain 40284 chr2 243199373 + 58372761 58373228 L1PA5 6144 - 0 469 68896 210 0 2 257 chain 5348 chr2 243199373 + 58377149 58377216 MER41B 635 - 85 156 191564 56 0 4 11 chain 544654 chr2 243199373 + 58398756 58404921 L1PA3long 6157 + 4 6157 2117 339 0 7 581 1 0 4 55 21 700 0 1 865 1 0 742 0 5 809 6 8 274 0 4 1775 0 4 6 0 1 7 chain 237154 chr2 243199373 + 58404964 58407834 L1PA7 6471 + 3548 6452 16926 64 1 0 310 0 3 6 1 4 99 0 3 918 1 0 115 5 4 371 0 6 151 0 4 15 0 3 377 8 10 74 0 1 108 1 13 245 chain 60858 chr2 243199373 + 58413982 58414708 L1PA6 6164 + 5435 6162 52403 79 0 2 500 2 1 145 chain 109847 chr2 243199373 + 58437631 58439197 THE1B-int 1605 - 0 1605 34246 23 0 4 40 2 1 94 2 1 193 89 88 369 15 16 7 1 0 55 20 33 211 16 38 322 0 3 72 2 5 5 3 0 25 chain 23638 chr2 243199373 + 58439197 58439582 THE1B 368 - 0 368 112372 75 1 0 100 31 24 52 29 30 39 0 1 34 11 0 13 chain 12065 chr2 243199373 + 58465225 58465403 MER30 238 + 34 235 151919 72 4 23 24 1 7 19 0 1 19 3 0 36 chain 5143 chr2 243199373 + 58489703 58489759 L1PA3long 6157 + 3629 3685 193630 56 chain 221791 chr2 243199373 + 58489788 58492217 L1PA3long 6157 + 3714 6145 17765 1593 0 1 706 0 1 130 chain 67170 chr2 243199373 + 58502510 58503292 LTR17 781 + 0 781 49581 327 1 0 454 chain 29892 chr2 243199373 + 58539317 58539632 AluYb8 318 + 0 315 85121 315 chain 27947 chr2 243199373 + 58541303 58541700 LTR7 482 + 0 482 93178 47 30 73 104 0 1 41 0 31 10 1 0 5 1 12 158 chain 252231 chr2 243199373 + 58541702 58544870 HERVH-int 3825 + 0 3825 16119 212 0 11 46 1 0 64 1 0 136 1 0 61 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 10 0 73 25 1 0 14 65 0 45 0 1 6 0 2 13 0 3 382 23 421 101 4 31 284 0 4 105 1 3 189 0 1 291 10 0 203 0 1 266 0 1 4 12 13 5 0 3 31 0 210 262 3 8 225 chain 24380 chr2 243199373 + 58546131 58546523 LTR7 482 + 0 482 108196 51 15 104 30 51 0 26 0 11 42 0 31 10 0 1 9 0 9 158 chain 519586 chr2 243199373 + 58552476 58558398 L1PA4 6152 + 1 6143 5204 1155 0 3 557 1 0 539 0 2 56 2 0 847 0 2 21 1 0 661 1 0 222 0 218 719 0 1 134 1 0 1005 chain 7907 chr2 243199373 + 58598779 58598879 L1PA6 6164 + 6047 6156 171601 59 0 9 41 chain 6975 chr2 243199373 + 58606673 58606772 MLT2B4 540 - 432 533 177643 18 6 8 75 chain 548988 chr2 243199373 + 58608677 58614701 L1PA2 6032 - 3 6032 1579 151 1 6 6 5 0 706 0 4 3627 0 1 417 0 1 374 1 0 480 1 0 183 0 1 72 chain 13667 chr2 243199373 + 58635181 58635609 L1MC1 2226 + 1807 2191 145715 32 31 24 24 7 1 29 8 7 56 17 12 55 131 107 30 1 0 7 chain 12950 chr2 243199373 + 58691135 58691334 L1PB1 5432 - 315 516 148429 12 1 2 50 16 16 21 0 2 94 1 0 4 chain 27109 chr2 243199373 + 58716822 58717189 THE1C 375 + 0 370 95907 24 0 1 113 1 5 32 4 2 33 0 1 139 1 0 20 chain 23640 chr2 243199373 + 58725796 58726075 AluSp 311 + 10 287 112355 122 2 0 155 chain 19060 chr2 243199373 + 58738299 58738525 L1PA6 6164 + 5935 6161 129941 226 chain 15010 chr2 243199373 + 58756674 58756906 THE1B 368 + 70 306 141291 98 2 1 29 0 3 12 14 17 12 5 4 60 chain 11804 chr2 243199373 + 58760246 58760544 AluSp 311 + 145 305 153012 24 144 6 130 chain 22141 chr2 243199373 + 58778885 58779224 L1PA17 2846 - 153 488 119617 45 1 0 16 1 0 8 0 2 31 4 1 56 17 15 17 4 0 89 0 5 50 chain 28597 chr2 243199373 + 58800610 58800920 AluYg6 310 - 3 310 90749 176 1 0 13 2 0 118 chain 122191 chr2 243199373 + 58813211 58814601 L1PA5 6144 - 7 1402 30309 66 3 4 766 0 4 555 chain 4542 chr2 243199373 + 58821072 58821174 MER5A1 166 - 12 114 200317 6 1 0 10 10 11 11 1 0 31 9 10 23 chain 25480 chr2 243199373 + 58825753 58826063 AluSp 311 - 3 311 102315 49 1 0 139 1 0 120 chain 26545 chr2 243199373 + 58849180 58849531 MER4D1 891 - 36 395 97862 193 1 0 48 7 16 102 chain 6408 chr2 243199373 + 58875052 58875253 MER5B 177 - 1 177 181957 43 104 80 29 1 0 24 chain 4426 chr2 243199373 + 58905442 58905490 MLT2C2 476 - 428 476 201644 48 chain 463248 chr2 243199373 + 58916067 58921764 L1PA7 6471 + 741 6458 8287 434 0 1 58 1 0 144 0 1 382 0 1 773 7 6 100 3 0 165 0 4 237 23 15 34 0 4 429 3 1 91 0 2 469 1 3 117 0 13 255 0 5 73 5 7 143 18 15 780 0 3 96 8 15 176 2 0 240 7 1 77 1 0 185 2 3 5 1 0 114 9 0 9 0 11 20 chain 6557 chr2 243199373 + 58952649 58952763 MLT1A0 366 + 12 128 180804 30 12 13 27 2 3 43 chain 5256 chr2 243199373 + 58975488 58975550 MER33 330 + 164 226 192445 62 chain 29026 chr2 243199373 + 59019540 59019843 AluYa5 310 - 7 310 88873 303 chain 83162 chr2 243199373 + 59049603 59050569 LTR13A 966 + 0 966 42269 695 0 5 8 6 1 257 chain 131040 chr2 243199373 + 59051117 59052593 L1PA3long 6157 - 0 1457 27851 147 0 1 542 21 0 345 1 2 420 chain 38067 chr2 243199373 + 59090974 59091522 MLT2A2 560 - 0 560 72037 67 10 11 17 22 23 29 3 14 88 1 0 311 chain 34539 chr2 243199373 + 59109570 59110020 L1PA8 5853 + 5410 5853 76848 156 1 0 42 2 0 74 1 0 11 1 0 47 2 1 19 2 1 92 chain 40113 chr2 243199373 + 59117556 59118062 L1PA8 5853 - 0 499 69162 93 1 0 19 2 1 47 17 15 70 2 0 44 1 0 210 chain 9075 chr2 243199373 + 59122359 59122471 LTR9B 643 - 81 192 165189 36 2 1 74 chain 39820 chr2 243199373 + 59218491 59218991 MER41A 554 - 21 554 69595 100 0 28 312 1 6 87 chain 6134 chr2 243199373 + 59223795 59223875 MLT1D 503 + 418 498 184137 80 chain 29462 chr2 243199373 + 59269355 59269670 AluYb8 318 + 0 315 86790 315 chain 27415 chr2 243199373 + 59292675 59292973 AluYa5 310 + 0 293 94921 118 5 0 175 chain 33549 chr2 243199373 + 59293897 59294376 LTR12E 1234 + 15 490 78317 42 26 20 48 7 6 328 1 3 9 7 8 11 chain 3795 chr2 243199373 + 59294376 59294417 LTR12C 1709 + 1668 1709 207686 41 chain 177971 chr2 243199373 + 59298082 59300263 L1PA7 6471 + 4269 6470 21165 5 0 2 166 17 15 141 5 7 64 5 9 68 1 0 530 0 4 341 0 3 15 2 1 60 4 6 91 4 1 280 0 9 85 5 6 292 chain 535402 chr2 243199373 + 59313895 59320021 L1PA4 6152 - 9 6149 3536 6 0 3 985 0 4 1189 0 2 13 1 2 1619 0 1 365 5 8 101 0 1 810 1 0 872 20 6 15 0 14 124 chain 15648 chr2 243199373 + 59328397 59328591 MLT2A2 560 - 366 560 139443 90 0 1 28 4 3 72 chain 333031 chr2 243199373 + 59350026 59353898 L1PA5 6144 - 5 3916 12089 1125 0 1 355 0 1 25 0 31 580 14 21 67 1 2 773 1 0 39 3 8 290 15 0 431 0 9 153 chain 115016 chr2 243199373 + 59389045 59390294 L1PA3long 6157 - 0 1248 32787 155 1 0 1093 chain 82800 chr2 243199373 + 59399628 59400906 LTR13A 966 + 0 966 42419 155 311 0 441 0 1 73 2 0 296 chain 17188 chr2 243199373 + 59420087 59420293 AluY 311 + 29 235 135068 94 1 0 4 1 2 106 chain 23007 chr2 243199373 + 59427224 59427587 THE1C 375 + 13 374 115593 134 0 1 25 52 46 123 4 7 25 chain 376970 chr2 243199373 + 59488545 59492746 L1PA4 6152 + 1946 6151 10847 99 0 1 136 0 2 200 0 3 2859 2 0 905 chain 8220 chr2 243199373 + 59549314 59549403 5S 121 + 0 89 169831 89 chain 544057 chr2 243199373 + 59553447 59559575 L1PA4 6152 + 6 6151 2201 574 1 0 2985 0 6 2143 0 12 425 chain 7296 chr2 243199373 + 59572070 59572156 MLT1A0 366 + 226 312 175473 86 chain 182740 chr2 243199373 + 59576170 59578712 L1PA7 6471 + 4254 6467 20711 42 47 13 254 309 2 260 0 1 365 0 3 98 0 2 7 1 0 78 0 2 25 0 2 301 0 1 617 6 8 132 chain 320840 chr2 243199373 + 59630213 59634942 L1PB1 5432 + 750 5422 12566 6 2 0 124 1 0 5 7 8 85 0 1 19 0 1 11 2 1 65 11 2 179 9 10 90 0 1 51 2 1 299 1 2 78 2 0 395 3 7 90 7 5 170 0 1 18 10 11 12 3 0 44 0 1 67 4 9 6 5 0 54 0 1 162 5 3 206 0 1 165 15 18 54 30 31 406 29 23 148 7 6 4 0 1 44 0 2 8 0 1 99 0 5 145 7 37 133 1 0 39 9 11 193 1 2 78 0 2 7 1 0 91 4 12 178 1 3 103 79 13 24 0 6 6 20 8 9 2 0 55 1 0 14 1 0 41 8 7 12 2 0 6 17 6 19 3 1 4 1 0 16 2 0 20 12 11 12 1 0 13 1 0 18 chain 362855 chr2 243199373 + 59635829 59641110 L1PB1 5432 - 155 5378 11297 41 1 0 15 2 1 45 36 22 6 1 0 8 2 1 20 20 18 103 1 2 107 0 9 38 1 2 19 27 30 48 0 1 4 1 0 49 8 7 63 9 6 29 5 6 4 1 0 212 0 1 390 11 18 44 0 1 4 7 6 173 1 4 439 0 2 186 0 2 83 2 1 53 14 18 92 20 15 204 5 0 6 4 9 108 6 0 6 0 4 6 10 11 185 32 15 84 2 1 5 0 1 781 9 0 6 2 0 100 12 0 15 12 18 81 2 3 16 1 0 26 3 4 42 0 1 13 59 4 186 0 1 82 0 1 197 1 2 12 27 33 8 1 0 102 2 1 113 8 28 254 chain 103083 chr2 243199373 + 59657178 59658434 L1PA7 6471 - 1 1241 35969 154 1 0 6 1 2 668 2 1 18 1 0 27 1 2 169 15 0 193 chain 131315 chr2 243199373 + 59658455 59660019 L1PA7 6471 + 3626 5188 27796 378 1 0 625 6 5 554 chain 3416 chr2 243199373 + 59666032 59666075 LTR16E1 515 + 429 473 216841 38 0 1 5 chain 115383 chr2 243199373 + 59705101 59706601 L1PA8 5853 + 4351 5853 32650 128 6 7 403 0 1 119 1 0 85 1 4 150 7 11 304 2 1 46 2 0 68 2 1 8 2 1 72 2 1 92 chain 9540 chr2 243199373 + 59730491 59730622 MER85 139 + 4 139 162884 8 0 1 78 0 10 13 7 0 25 chain 125909 chr2 243199373 + 59734467 59736010 THE1A-int 1579 + 0 1556 29128 203 1 0 213 1 2 568 1 14 556 chain 4909 chr2 243199373 + 59739963 59740027 MLT2B5 662 - 594 662 196173 34 0 4 30 chain 5574 chr2 243199373 + 59760127 59760206 MADE1 96 - 1 96 189332 36 1 17 42 chain 155878 chr2 243199373 + 59781824 59783520 L1HS 6032 - 2786 4482 23853 1696 chain 257364 chr2 243199373 + 59783520 59786299 L1PA2 6032 + 3252 6030 15859 2629 1 0 149 chain 3846 chr2 243199373 + 59792973 59793035 MADE1 96 - 2 54 209691 45 10 0 7 chain 4790 chr2 243199373 + 59820456 59820512 L1PA2 6032 + 5975 6030 197459 37 1 0 18 chain 4634 chr2 243199373 + 59832905 59832981 L1MB7 1623 - 194 268 199254 7 1 0 52 0 1 9 2 0 5 chain 14098 chr2 243199373 + 59834167 59834479 THE1D 372 + 15 372 144229 42 76 79 21 31 67 14 1 7 127 chain 115354 chr2 243199373 + 59841380 59842850 THE1B-int 1605 - 7 1560 32662 504 6 7 365 7 62 203 0 25 164 0 2 221 chain 60945 chr2 243199373 + 59865220 59865896 L1PA4 6152 - 991 1668 52364 309 0 1 367 chain 87892 chr2 243199373 + 59865896 59866886 L1PA4 6152 + 5160 6151 40418 789 0 1 201 chain 4555 chr2 243199373 + 59874766 59874818 U6 107 + 11 63 200161 52 chain 80181 chr2 243199373 + 59875195 59876081 L1PA3long 6157 + 5270 6157 43515 42 0 3 837 2 0 5 chain 11567 chr2 243199373 + 59907482 59907638 L1PB3 3668 - 403 558 154036 49 0 1 32 5 3 70 chain 55562 chr2 243199373 + 59909687 59910324 L1PA5 6144 - 0 637 55377 637 chain 155629 chr2 243199373 + 59914391 59916146 L1PA5 6144 + 4381 6144 23903 327 1 0 586 0 3 829 1 7 11 chain 34914 chr2 243199373 + 59916146 59916566 L1PA7 6471 + 6050 6469 76320 87 1 0 332 chain 115262 chr2 243199373 + 59925428 59927215 L1MA1 4479 - 289 4258 32696 18 2 15 5 1 0 9 7 6 30 2 0 29 1 0 20 0 4 102 3 0 6 2 1 86 1 0 12 11 8 13 1 0 28 1 0 24 22 1821 204 4 6 64 4 5 350 6 0 13 6 5 10 5 8 34 0 6 262 0 4 140 1 0 61 0 4 13 70 442 42 2 0 53 1 0 6 chain 102930 chr2 243199373 + 60058705 60059822 L1PA2 6032 - 0 1117 36011 1117 chain 7389 chr2 243199373 + 60059822 60059902 L1PA2 6032 + 4815 4895 173700 80 chain 30296 chr2 243199373 + 60066049 60066367 AluYb8 318 + 0 318 83922 318 chain 6578 chr2 243199373 + 60066830 60066904 L1PA2 6032 - 4 78 180625 74 chain 110890 chr2 243199373 + 60088151 60089662 THE1C-int 1605 - 25 1605 33970 174 4 5 268 3 4 49 3 4 193 1 0 4 0 1 22 10 11 136 1 2 72 4 3 83 11 12 32 2 5 48 0 7 41 0 1 232 1 55 101 2 1 14 chain 17169 chr2 243199373 + 60089662 60090020 THE1C 375 - 0 375 135110 87 10 9 7 1 0 41 108 127 104 chain 6973 chr2 243199373 + 60095349 60095468 MER82 654 - 479 599 177668 39 25 26 55 chain 2783 chr2 243199373 + 60168763 60168856 MIR 256 - 123 223 228970 26 12 17 13 29 31 13 chain 28701 chr2 243199373 + 60197904 60198207 AluYa5 310 + 7 310 90325 303 chain 45771 chr2 243199373 + 60214329 60214868 L1PA7 6471 + 5929 6470 62256 8 0 1 197 1 2 333 chain 4644 chr2 243199373 + 60229860 60229922 MER58B 340 + 37 101 199136 17 0 2 45 chain 507410 chr2 243199373 + 60262008 60267880 L1PA4 6152 + 11 6141 6371 1221 4 5 609 1 0 532 0 1 588 0 1 214 0 1 443 0 4 680 0 1 244 1 267 83 15 0 6 3 0 113 0 1 359 0 1 756 chain 27289 chr2 243199373 + 60303146 60303504 L1PA8 5853 + 5503 5853 95305 61 1 0 45 2 0 70 1 0 5 13 11 45 2 1 19 1 0 93 chain 4982 chr2 243199373 + 60307526 60307582 MER96 175 + 0 56 195336 56 chain 557841 chr2 243199373 + 60310797 60316829 L1PA2 6032 + 0 6032 518 256 1 0 1337 0 1 4438 chain 4140 chr2 243199373 + 60343057 60343108 MADE1 96 + 45 96 205358 51 chain 14374 chr2 243199373 + 60344927 60345182 L1PA14 3548 - 63 306 143289 20 1 0 9 6 0 39 1 0 17 27 24 29 16 15 90 chain 14296 chr2 243199373 + 60348537 60348737 L1PA8 5853 + 5650 5853 143575 29 1 0 9 1 0 20 0 7 28 1 0 17 6 5 88 chain 507652 chr2 243199373 + 60357313 60363466 L1PA5 6144 - 0 6135 6353 227 0 2 537 0 1 362 0 1 110 3 0 6 15 0 604 1 0 63 0 1 1033 4 0 36 0 3 842 4 3 1142 15 6 205 31 6 131 0 17 553 12 13 26 1 0 69 0 14 74 5 6 42 chain 556575 chr2 243199373 + 60368326 60374358 L1PA2 6032 + 1 6032 662 2561 1 0 3470 chain 538871 chr2 243199373 + 60416160 60422184 L1PA3long 6157 + 0 6156 3009 149 10 11 26 2 1 80 0 1 508 0 128 1886 0 4 3024 1 0 338 chain 163784 chr2 243199373 + 60422793 60424940 L1PA7 6471 - 4 2147 22836 6 5 0 104 18 0 60 2 0 6 0 2 463 6 41 154 1 0 10 1 0 214 13 4 79 0 1 501 0 4 249 32 22 223 chain 11969 chr2 243199373 + 60427820 60427952 L1PA5 6144 - 4 136 152325 132 chain 14772 chr2 243199373 + 60427952 60428119 L1PA4 6152 + 5730 5897 142020 167 chain 509977 chr2 243199373 + 60428119 60434905 L1PA7 6471 - 40 6468 6168 20 0 21 529 4 24 216 17 15 328 28 3 273 17 18 51 21 22 310 414 16 104 1 0 218 0 1 5 1 0 509 0 1 6 1 0 156 9 13 202 0 1 574 0 1 161 0 1 672 14 0 420 0 12 205 7 8 795 0 1 107 0 2 68 0 16 323 chain 35476 chr2 243199373 + 60429947 60430335 L1PA2 6032 + 5644 6032 75586 388 chain 114363 chr2 243199373 + 60462457 60463766 L1PA5 6144 - 0 1302 32976 574 8 0 707 0 1 20 chain 26681 chr2 243199373 + 60463871 60464221 L1PA8 5853 + 5510 5853 97382 54 1 0 43 3 1 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 13680 chr2 243199373 + 60477085 60477251 AluSz6 309 + 8 174 145673 166 chain 3427 chr2 243199373 + 60502121 60502179 MLT1J 494 + 101 158 216630 27 8 7 23 chain 9235 chr2 243199373 + 60538864 60538981 L1MA10 1535 + 1264 1381 164377 117 chain 11331 chr2 243199373 + 60621064 60621223 L1PA8 5853 + 5696 5853 154955 44 2 1 19 2 1 92 chain 14829 chr2 243199373 + 60631418 60631631 MER20 218 + 5 212 141845 21 16 11 54 1 0 121 chain 28933 chr2 243199373 + 60644569 60644968 LTR7 482 + 0 482 89307 101 15 14 17 0 51 41 5 37 46 0 1 174 chain 287908 chr2 243199373 + 60644970 60648714 HERVH-int 3825 + 0 3762 14164 500 37 31 12 256 0 27 1 0 10 1 0 24 6 18 9 3 0 25 1 0 42 2 1 57 0 1 7 0 2 12 0 5 318 0 2 443 6 7 132 4 31 74 8 19 206 0 10 84 0 2 536 0 2 421 9 11 39 0 210 432 chain 4551 chr2 243199373 + 60645660 60645713 HERVH-int 3825 + 436 489 200206 53 chain 2302 chr2 243199373 + 60645713 60645738 HERVH-int 3825 + 545 570 230785 25 chain 39771 chr2 243199373 + 60649150 60649620 LTR7Y 441 + 0 441 69665 165 31 0 112 0 2 162 chain 9192 chr2 243199373 + 60652155 60652621 MER4A1 472 + 27 420 106151 20 1 2 4 1 0 46 96 0 121 0 15 8 0 6 22 0 5 6 18 13 100 13 15 10 chain 65070 chr2 243199373 + 60652634 60653361 L1PA4 6152 + 5416 6143 50543 727 chain 750 chr2 243199373 + 60653372 60653410 MER4A1 472 + 420 458 106151 38 chain 21583 chr2 243199373 + 60676378 60676651 AluSg 306 + 2 280 121833 135 12 17 126 chain 12685 chr2 243199373 + 60704586 60704738 L1PA7 6471 + 6311 6462 149503 6 1 0 145 chain 11023 chr2 243199373 + 60816052 60816215 MER47A 366 - 164 329 156118 98 19 21 46 chain 5337 chr2 243199373 + 60823568 60823633 MLT1C 463 + 40 105 191668 65 chain 2829 chr2 243199373 + 60824325 60824355 THE1D 372 + 330 360 228249 30 chain 31726 chr2 243199373 + 60844277 60844822 Tigger3b 1229 + 201 765 81285 49 6 0 45 1 0 24 23 38 153 0 1 16 4 3 31 0 1 8 18 28 28 8 10 8 1 0 40 18 17 64 chain 24032 chr2 243199373 + 60857698 60858077 THE1B 368 + 0 368 110159 15 2 0 32 0 1 63 0 3 6 8 6 10 0 1 32 31 24 101 1 0 37 4 0 37 chain 6510 chr2 243199373 + 60908487 60908570 MER2 342 - 14 98 181160 6 0 1 77 chain 11506 chr2 243199373 + 60926117 60926247 L1PA4 6152 - 6 134 154269 31 2 0 97 chain 25591 chr2 243199373 + 60939374 60939671 AluSp 311 - 14 311 101772 297 chain 6094 chr2 243199373 + 60940640 60940714 THE1B-int 1605 + 1526 1600 184470 74 chain 26349 chr2 243199373 + 60940719 60941078 THE1B 368 + 0 368 98618 15 14 30 127 2 1 19 6 0 176 chain 44932 chr2 243199373 + 60943400 60944088 MER50 708 + 17 708 63133 18 8 12 10 15 0 64 0 6 43 0 1 103 10 9 105 15 14 82 1 0 8 26 36 18 1 0 4 0 1 157 chain 31207 chr2 243199373 + 60959678 60960071 MER51B 395 - 0 392 82154 150 1 0 242 chain 19920 chr2 243199373 + 60966690 60967047 MER83 447 - 50 447 127400 146 93 133 118 chain 25266 chr2 243199373 + 60996900 60997250 L1PA8 5853 - 0 347 103386 22 1 0 71 1 0 16 5 4 36 0 1 10 1 0 14 3 2 69 2 0 22 0 4 18 1 0 58 chain 5378 chr2 243199373 + 60999909 60999969 Charlie1a 1436 - 389 449 191224 60 chain 29668 chr2 243199373 + 61003863 61004289 Tigger1 2417 - 1290 1733 85968 44 9 10 16 6 12 158 0 10 8 7 8 104 1 0 73 chain 25040 chr2 243199373 + 61011109 61011405 AluSg7 307 - 10 307 104599 170 0 1 126 chain 31197 chr2 243199373 + 61016119 61016473 L1PA3long 6157 + 5804 6157 82168 336 1 0 17 chain 23950 chr2 243199373 + 61016942 61017246 AluSq2 311 + 0 301 110625 111 5 1 16 0 1 172 chain 18216 chr2 243199373 + 61053617 61053836 MER57B1 401 + 0 219 132293 219 chain 6929 chr2 243199373 + 61068615 61068721 MER5A 189 - 56 164 177969 11 4 5 37 4 5 50 chain 25790 chr2 243199373 + 61092509 61092869 THE1C 375 + 13 375 100913 51 7 8 79 1 2 30 1 2 164 2 1 25 chain 5036 chr2 243199373 + 61096065 61096129 MLT1A0 366 - 50 113 194776 20 1 0 43 chain 64171 chr2 243199373 + 61116616 61117357 L1PA4 6152 - 16 773 50929 244 1 0 5 7 24 484 chain 12558 chr2 243199373 + 61132755 61132910 MER50 708 - 21 201 150014 39 0 25 116 chain 3432 chr2 243199373 + 61148195 61148238 MER58A 224 + 166 209 216540 43 chain 150369 chr2 243199373 + 61155306 61156956 L1PA3long 6157 + 4493 6149 24556 817 0 4 667 0 2 166 chain 3089 chr2 243199373 + 61188920 61188954 MADE1 96 - 62 96 223105 34 chain 8730 chr2 243199373 + 61227892 61228011 MER85 139 + 9 139 167024 87 3 14 29 chain 23250 chr2 243199373 + 61231487 61231786 AluY 311 + 10 305 114442 62 5 1 50 1 0 9 0 1 172 chain 23748 chr2 243199373 + 61234938 61235229 AluY 311 + 0 300 111785 43 0 3 86 0 1 7 0 5 155 chain 11942 chr2 243199373 + 61239466 61239673 MER39B 650 + 3 216 152436 77 0 3 12 18 23 13 27 25 60 chain 112405 chr2 243199373 + 61248197 61249617 L1P2 5180 + 13 1444 33559 137 11 10 31 4 3 53 3 2 19 16 16 230 2 1 272 0 15 642 chain 19770 chr2 243199373 + 61253470 61253780 AluSg7 307 - 0 307 127907 85 11 7 47 36 37 131 chain 501444 chr2 243199373 + 61261472 61267868 L1PA6 6164 + 0 6151 6760 388 41 39 22 8 0 118 1 0 85 0 2 133 0 17 125 0 1 160 0 3 225 0 1 4 6 5 37 309 0 238 0 1 188 0 2 62 0 4 262 4 0 212 1 0 43 0 4 16 0 4 181 0 4 258 0 2 85 0 4 105 0 3 153 0 1 43 0 4 21 0 3 45 1 0 4 0 1 1037 5 17 475 0 2 225 0 1 240 0 3 160 0 3 165 0 1 365 1 0 139 chain 55723 chr2 243199373 + 61369453 61370532 MER4E1 777 - 10 775 55290 7 0 1 171 1 0 38 6 14 16 309 0 36 6 0 55 12 9 77 3 2 14 0 4 169 0 3 126 10 0 23 chain 24574 chr2 243199373 + 61373696 61373998 AluSc5 308 + 8 305 107112 185 5 0 112 chain 24269 chr2 243199373 + 61380011 61380302 AluSp 311 + 3 301 108855 88 0 3 155 0 4 48 chain 4886 chr2 243199373 + 61397922 61397981 Tigger2 2703 + 2470 2529 196422 59 chain 9666 chr2 243199373 + 61505815 61505928 L1PA5 6144 + 6030 6143 162264 113 chain 66552 chr2 243199373 + 61533027 61533797 L1PA5 6144 - 802 1598 49770 47 0 4 12 0 4 128 0 5 26 0 1 107 0 6 375 0 5 33 0 1 42 chain 71544 chr2 243199373 + 61533797 61534589 L1PA5 6144 + 5331 6123 47676 792 chain 24195 chr2 243199373 + 61549081 61549395 AluSp 311 + 0 301 109245 132 2 0 159 11 0 10 chain 3494 chr2 243199373 + 61570553 61570594 L1MB8 1703 - 138 179 215440 41 chain 19849 chr2 243199373 + 61608141 61608356 SVA_D 2077 + 1862 2077 127656 215 chain 25324 chr2 243199373 + 61612534 61612833 AluY 311 + 0 309 103100 20 4 14 275 chain 23083 chr2 243199373 + 61615619 61615897 AluY 311 + 10 289 115222 122 0 1 156 chain 28253 chr2 243199373 + 61622651 61622946 AluYd8 298 + 0 295 92101 295 chain 24955 chr2 243199373 + 61639041 61639347 AluSp 311 + 0 305 105029 26 1 0 279 chain 22639 chr2 243199373 + 61667991 61668276 AluY 311 + 11 297 117378 248 19 20 18 chain 15212 chr2 243199373 + 61670090 61670460 L1MA5A 2387 + 2062 2375 140739 46 1 0 50 2 0 10 0 2 17 2 0 28 46 15 21 0 1 41 74 52 17 2 0 13 chain 19476 chr2 243199373 + 61700073 61700311 AluSp 311 + 59 303 128726 77 0 4 119 0 2 42 chain 21538 chr2 243199373 + 61711782 61712039 AluYc3 301 - 31 290 122013 36 0 1 118 1 2 102 chain 16378 chr2 243199373 + 61718325 61718590 AluSg 306 + 10 285 137260 139 59 69 67 chain 4426 chr2 243199373 + 61736829 61736894 Tigger4a 237 + 149 215 201645 29 2 3 34 chain 24467 chr2 243199373 + 61743557 61743838 AluSp 311 - 20 301 107722 281 chain 3078 chr2 243199373 + 61767085 61767150 MER2 342 + 152 217 223359 25 18 18 22 chain 5108 chr2 243199373 + 61772557 61772623 MER47A 366 + 70 163 193997 31 0 27 35 chain 22046 chr2 243199373 + 61794784 61795062 AluY 311 + 2 288 120035 39 0 2 139 7 13 93 chain 43769 chr2 243199373 + 61797088 61797931 MER9a2 513 + 0 513 64488 176 330 0 314 1 0 4 0 1 18 chain 220050 chr2 243199373 + 61818810 61821777 L1PA8 5853 + 324 5853 17877 142 12 9 157 1 2 149 0 3 7 11 6 538 0 1 225 131 2691 170 5 6 163 1 0 283 3 4 33 0 1 85 1 0 11 7 5 67 1 3 477 1 0 19 1 5 22 2 0 69 3 8 55 2 1 16 7 6 90 chain 42527 chr2 243199373 + 61825529 61826037 LTR10F 562 - 0 562 65986 330 0 14 18 0 11 12 1 29 17 0 1 130 chain 9261 chr2 243199373 + 61832750 61832857 U6 107 + 0 107 164252 107 chain 14417 chr2 243199373 + 61840992 61841195 L1PA8 5853 - 0 198 143160 92 2 1 19 2 1 47 2 0 14 1 0 24 chain 33858 chr2 243199373 + 61874119 61874551 LTR3 431 - 0 431 77844 63 13 12 356 chain 6311 chr2 243199373 + 61876715 61876786 MER41A 554 - 86 157 182709 71 chain 33712 chr2 243199373 + 61902375 61902856 LOR1a 498 + 0 481 78073 290 12 13 80 19 18 80 chain 20939 chr2 243199373 + 61902882 61903304 LTR54 533 - 112 529 124154 33 1 0 5 0 1 8 10 0 17 104 109 5 2 0 63 1 0 102 0 3 71 chain 6603 chr2 243199373 + 61904272 61904673 MER57B2 428 + 0 107 180432 39 308 14 54 chain 3389 chr2 243199373 + 61911934 61911976 L1MD 993 - 211 253 217294 42 chain 6047 chr2 243199373 + 61936293 61936361 MER41B 635 + 479 547 184837 68 chain 25104 chr2 243199373 + 61950427 61950729 AluSp 311 - 0 300 104266 26 2 0 274 chain 9546 chr2 243199373 + 61966204 61966441 Tigger2 2703 - 0 231 162854 13 48 41 16 1 0 7 1 2 13 18 15 20 4 8 96 chain 25196 chr2 243199373 + 61988830 61989132 AluSp 311 - 14 311 103758 190 5 0 107 chain 26675 chr2 243199373 + 62005291 62005663 LTR3A 482 + 43 420 97406 223 9 6 34 0 7 67 5 7 18 2 1 14 chain 3661 chr2 243199373 + 62018854 62018898 MER50 708 + 180 224 212555 44 chain 28143 chr2 243199373 + 62021019 62021352 L1PA7 6471 - 7 341 92485 148 0 1 185 chain 25574 chr2 243199373 + 62023185 62023501 AluSp 311 + 0 311 101849 91 0 3 26 6 0 149 3 1 41 chain 28252 chr2 243199373 + 62024589 62024965 THE1C 375 + 0 375 92102 114 8 6 64 2 3 188 chain 44364 chr2 243199373 + 62031008 62031551 MER41A 554 - 0 539 63738 417 2 0 38 2 0 84 chain 24099 chr2 243199373 + 62050195 62050481 AluSg4 309 + 8 294 109747 286 chain 21809 chr2 243199373 + 62113900 62114183 AluSp 311 - 16 301 120987 30 8 10 245 chain 21713 chr2 243199373 + 62117368 62117653 AluSp 311 - 24 306 121335 40 10 12 218 5 0 12 chain 12005 chr2 243199373 + 62127604 62127867 MER49 923 - 637 923 152177 36 4 5 25 1 16 31 6 9 26 50 53 47 5 6 32 chain 33081 chr2 243199373 + 62152450 62152835 LTR21A 479 - 54 479 79079 166 0 3 185 0 38 11 1 0 22 chain 3627 chr2 243199373 + 62153555 62153599 LTR54 533 - 0 44 213201 44 chain 4597 chr2 243199373 + 62160417 62160503 LTR1C 686 - 555 616 199662 19 25 0 42 chain 38798 chr2 243199373 + 62198250 62198760 LTR10D 510 - 0 510 71018 245 1 3 31 1 0 4 1 2 5 0 1 125 0 1 8 2 0 9 9 7 69 chain 101655 chr2 243199373 + 62206882 62207968 L1HS 6032 - 0 1086 36355 1086 chain 20052 chr2 243199373 + 62208675 62209014 THE1B 368 - 0 368 126968 48 4 12 12 1 0 53 40 46 23 4 5 103 7 22 44 chain 7034 chr2 243199373 + 62223341 62223430 Tigger1 2417 - 188 277 177230 89 chain 81187 chr2 243199373 + 62232594 62233491 L1PA3long 6157 + 5258 6157 43095 52 0 4 102 1 0 599 1 0 142 chain 79968 chr2 243199373 + 62268794 62269893 LTR12D 1347 - 0 1347 43613 63 1 0 81 0 200 194 1 0 103 18 12 104 1 0 23 2 0 6 33 25 194 6 42 76 0 10 92 5 26 96 chain 3070 chr2 243199373 + 62269391 62269424 LTR12D 1347 - 669 702 185653 33 chain 13542 chr2 243199373 + 62274951 62275147 Tigger3c 601 + 332 530 146205 8 2 0 4 5 0 20 4 13 153 chain 182495 chr2 243199373 + 62282017 62284412 Charlie3 2679 + 161 2679 20742 111 3 0 50 0 4 17 0 4 93 0 22 26 5 12 28 1 6 25 1 0 39 0 1 36 11 22 57 1 0 99 0 3 159 0 3 75 0 1 11 0 10 64 2 4 27 5 8 83 0 3 312 0 3 46 15 22 187 0 4 483 0 3 14 0 4 41 8 5 61 13 1 153 1 44 32 chain 56383 chr2 243199373 + 62315847 62316929 MER4E1 777 - 0 759 54913 167 0 1 249 0 13 109 6 7 13 337 0 44 8 7 149 chain 58968 chr2 243199373 + 62327463 62328263 MER4E1 777 - 10 777 53416 216 39 14 36 0 1 168 0 1 78 12 11 27 1 0 190 8 0 25 chain 31737 chr2 243199373 + 62329656 62330101 MER39B 650 + 0 445 81266 34 8 20 13 0 2 11 4 0 342 13 3 20 chain 8578 chr2 243199373 + 62371390 62371490 L1PA16 3655 - 119 226 167861 17 0 7 83 chain 5086 chr2 243199373 + 62396854 62396991 LTR10F 562 + 106 187 194223 24 65 9 48 chain 30080 chr2 243199373 + 62457108 62457426 AluYb8 318 - 0 318 84561 318 chain 26375 chr2 243199373 + 62477746 62478037 AluYa5 310 - 6 290 98516 7 7 0 277 chain 12905 chr2 243199373 + 62493376 62493622 MER30 238 - 0 202 148609 88 0 1 10 1 0 6 7 0 14 3 22 13 56 0 48 chain 24533 chr2 243199373 + 62502498 62502793 THE1B 368 + 64 356 107357 105 1 0 23 2 0 164 chain 23569 chr2 243199373 + 62552663 62553153 LTR10E 629 - 81 629 112750 18 1 0 18 128 125 10 1 0 25 0 1 4 1 0 131 0 60 42 20 24 74 1 0 16 chain 25096 chr2 243199373 + 62554306 62554662 THE1B 368 - 0 368 104315 168 2 0 22 19 18 100 1 16 44 chain 10963 chr2 243199373 + 62557424 62557560 MER4B 649 - 17 152 156349 70 1 0 65 chain 19615 chr2 243199373 + 62557570 62557942 THE1D 372 - 0 372 128351 133 1 7 7 1 0 25 32 34 56 1 0 5 33 36 22 16 7 40 chain 15998 chr2 243199373 + 62575116 62575402 MER39B 650 + 41 268 138356 21 1 0 4 1 2 151 64 5 44 chain 5455 chr2 243199373 + 62576536 62576599 LTR26B 539 + 0 63 190478 63 chain 14212 chr2 243199373 + 62584246 62584438 MER47A 366 + 98 295 143842 111 4 9 77 chain 39331 chr2 243199373 + 62600139 62600669 LTR10C 591 - 62 591 70283 11 5 8 19 10 9 17 7 6 426 2 0 33 chain 28103 chr2 243199373 + 62601291 62601729 MER4A1 472 - 0 456 92638 68 5 8 161 36 44 137 6 13 11 1 0 8 0 1 5 chain 3729 chr2 243199373 + 62605124 62605172 L1MA4 2864 + 2756 2802 211483 10 2 0 36 chain 21786 chr2 243199373 + 62605279 62605621 THE1D 372 + 0 357 121079 56 13 19 91 21 24 4 1 0 31 3 9 43 0 1 79 chain 7402 chr2 243199373 + 62609945 62610276 MLT1F1 559 - 64 399 174763 31 110 119 24 31 0 7 6 0 12 20 51 52 23 24 15 chain 20697 chr2 243199373 + 62613931 62614608 MER34C2 569 + 247 558 124979 21 1 2 68 3 1 25 1 0 4 0 1 18 372 8 75 1 0 88 chain 13209 chr2 243199373 + 62617964 62618126 Tigger2a 444 + 210 373 147428 25 0 1 137 chain 31476 chr2 243199373 + 62619264 62619764 L1MA1 4479 - 289 765 81681 17 47 37 29 2 0 29 1 0 126 3 0 6 2 1 86 1 0 13 2 0 20 1 0 71 1 0 16 2 0 25 chain 110043 chr2 243199373 + 62620822 62622550 L1PREC2 3366 + 1364 3006 34205 323 0 3 68 16 15 33 6 7 13 8 9 43 56 22 384 0 1 33 0 1 9 6 5 7 0 1 258 1 0 118 1 0 35 2 0 54 2 1 17 55 29 14 29 21 17 6 1 14 67 52 27 0 1 6 chain 283852 chr2 243199373 + 62645006 62649528 L1MA1 4479 + 219 4157 14422 8 1 0 45 6 4 29 1 0 51 1 0 5 0 3 24 0 1 105 0 1 217 285 0 94 1 3 34 298 0 36 0 12 71 1 0 4 0 1 10 1 22 8 1 0 96 4 0 175 7 6 24 0 3 103 1 0 113 0 1 115 0 2 139 0 4 188 0 1 68 0 1 44 2 0 491 0 4 10 2 1 31 0 6 34 2 1 103 2 0 33 1 0 62 1 0 95 6 5 15 0 4 169 27 21 76 1 0 12 5 0 28 1 7 13 5 0 56 0 2 7 28 8 5 3 0 130 7 5 29 0 2 45 1 0 115 1 0 24 2 0 16 1 0 20 0 2 49 16 15 5 2 0 7 0 1 5 2 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 0 1 5 chain 25393 chr2 243199373 + 62706198 62706738 L1MA5A 2387 - 31 505 102727 16 65 48 60 29 1 14 9 6 29 2 0 9 0 1 6 19 11 28 0 1 18 1 0 45 24 22 8 1 0 55 8 0 50 0 2 44 chain 20554 chr2 243199373 + 62718330 62718613 7SLRNA 320 + 18 306 125461 65 1 0 133 1 0 26 8 18 40 3 0 6 chain 4764 chr2 243199373 + 62732029 62732088 MER58B 340 + 268 327 197773 59 chain 527444 chr2 243199373 + 62742656 62748789 L1PA5 6144 - 0 6144 4452 11 3 1 299 0 1 538 1 0 72 0 1 108 0 1 1525 0 2 729 1 0 159 4 5 1463 0 1 57 9 0 745 0 1 16 10 11 251 16 30 51 1 2 64 chain 83319 chr2 243199373 + 62760718 62761762 MER11C 1089 - 26 1089 42194 198 1 2 125 0 1 34 2 1 10 0 4 16 0 1 285 1 0 65 0 4 12 0 1 49 0 9 246 chain 36369 chr2 243199373 + 62762587 62763076 LTR12F 595 - 0 595 74402 242 1 65 73 0 9 14 1 34 12 2 0 42 0 1 77 0 1 25 chain 10653 chr2 243199373 + 62777967 62778115 L1MA7 2200 - 294 439 157593 77 1 0 40 6 4 24 chain 2745 chr2 243199373 + 62780693 62780730 LTR37B 484 + 448 484 229552 12 1 0 24 chain 525607 chr2 243199373 + 62808038 62814121 L1PA4 6152 - 18 6142 4618 242 1 0 8 6 0 576 0 8 987 0 60 291 0 3 277 1 0 1485 26 1 350 0 1 1079 6 7 56 0 1 692 chain 131363 chr2 243199373 + 62826727 62828286 L1PA8A 6298 - 8 1572 27787 103 6 5 697 1 0 22 0 1 245 1 2 292 0 1 160 0 4 32 chain 540642 chr2 243199373 + 62832372 62838505 L1PA4 6152 + 1 6143 2716 1235 1 0 561 0 2 638 0 4 1881 0 1 28 0 4 666 1 0 4 0 1 872 1 0 245 chain 525192 chr2 243199373 + 62843553 62849864 L1PA7 6471 - 6 6466 4669 155 1 2 425 0 1 88 0 1 172 1 0 352 0 2 576 0 1 204 0 1 216 0 1 342 5 4 419 1 0 943 0 1 392 0 4 78 0 1 374 2 0 22 0 23 93 0 1 463 0 1 317 0 119 146 0 1 57 0 1 56 1 0 7 5 0 398 chain 27569 chr2 243199373 + 62854651 62855058 LTR22A 463 + 15 427 94438 201 26 29 91 23 22 10 0 1 7 0 2 49 chain 132249 chr2 243199373 + 62856797 62858354 SVA_C 1631 + 0 1631 27576 13 8 8 657 0 117 124 46 0 99 1 0 589 0 4 20 chain 2538 chr2 243199373 + 62857599 62857645 SVA_C 1631 + 873 918 163651 41 1 0 4 chain 517382 chr2 243199373 + 62860132 62866856 L1PA7 6471 + 8 6469 5439 253 3 4 146 0 1 56 0 1 350 0 7 193 0 1 82 0 1 107 0 4 281 0 3 54 0 1 28 0 1 449 1 0 134 0 4 717 0 4 363 0 1 443 0 1 286 0 1 275 2 1 226 0 1 63 328 11 114 1 5 99 0 3 139 4 6 27 2 0 237 1 5 86 15 20 170 0 5 124 0 4 17 0 5 11 6 7 64 1 0 125 9 1 24 9 10 443 1 3 145 2 0 8 chain 130021 chr2 243199373 + 62871357 62872830 L1P1 4361 - 70 1542 28083 140 1 0 475 1 0 356 0 2 7 1 0 492 chain 539494 chr2 243199373 + 62872852 62878861 L1PA3long 6157 - 2 6153 2901 2833 1 0 551 3 6 1861 0 128 616 7 19 137 chain 6974 chr2 243199373 + 62878883 62878957 L1P1 4361 - 1527 1601 176956 74 chain 161078 chr2 243199373 + 62878957 62880769 L1PA4 6152 + 4334 6146 23180 1812 chain 5898 chr2 243199373 + 62920773 62921016 L1MA4 2864 - 60 269 186202 27 9 10 21 139 104 47 chain 18250 chr2 243199373 + 62946718 62947013 MER2 342 + 13 318 132202 55 0 3 5 13 20 12 9 11 29 5 4 52 1 0 114 chain 10606 chr2 243199373 + 62947865 62948031 MER30 238 - 0 183 157802 61 2 4 35 2 0 8 10 27 48 chain 92197 chr2 243199373 + 62949981 62951438 L1PA13 3608 - 2067 3522 38901 52 22 22 144 55 76 92 0 5 52 0 1 38 8 6 244 0 4 175 2 0 93 10 6 16 2 0 14 6 4 16 1 0 14 0 6 16 2 0 17 1 0 13 1 0 124 7 5 68 28 17 24 3 0 30 43 38 19 1 0 4 chain 11281 chr2 243199373 + 62954644 62954899 L1MB8 1703 - 115 398 155122 17 6 5 15 11 34 58 65 71 83 chain 4966 chr2 243199373 + 62968957 62969031 MER2 342 + 131 210 195521 24 0 4 16 3 0 9 0 4 22 chain 17526 chr2 243199373 + 62969076 62969346 Tigger3a 397 + 43 365 134193 32 17 65 42 1 0 150 1 7 20 1 0 6 chain 4857 chr2 243199373 + 62974845 62974922 MADE1 96 + 1 96 196703 29 10 28 38 chain 531532 chr2 243199373 + 62976120 62982265 L1PA5 6144 - 0 6144 4017 18 1 0 154 2 1 489 0 3 894 0 1 347 2 1 75 0 1 878 1 2 268 1 2 238 0 4 407 0 4 9 27 1 899 0 4 30 1 6 545 0 1 395 0 4 414 1 0 49 chain 12432 chr2 243199373 + 62985021 62985164 AluYk4 311 + 156 299 150526 143 chain 146379 chr2 243199373 + 62994989 62997160 L1PREC2 3366 + 900 3037 25107 211 1 2 127 8 10 5 1 0 48 13 15 16 0 4 201 3 2 227 0 3 271 0 2 36 7 10 8 0 1 205 13 14 281 1 0 35 0 1 84 0 1 4 1 0 22 5 6 54 1 0 44 1 0 4 132 98 11 22 8 35 6 4 27 chain 95532 chr2 243199373 + 63009940 63011169 THE1C-int 1605 - 6 1251 37949 96 0 1 278 10 11 739 5 6 16 0 7 79 0 6 6 chain 3213 chr2 243199373 + 63028248 63028286 LTR82A 830 - 517 555 220697 38 chain 554004 chr2 243199373 + 63062613 63068633 L1PA2 6032 + 0 6032 949 1039 0 3 3187 0 4 1777 0 5 17 chain 11861 chr2 243199373 + 63080293 63080440 Tigger1 2417 - 13 160 152786 147 chain 11191 chr2 243199373 + 63116777 63117094 L1PREC2 3366 - 403 638 155459 11 4 1 29 3 1 11 11 6 17 62 17 16 18 0 4 1 0 43 8 7 48 7 0 24 chain 7177 chr2 243199373 + 63117846 63117932 L1PREC2 3366 + 2195 2281 176230 86 chain 16682 chr2 243199373 + 63207265 63207521 MER1B 344 - 6 260 136458 57 31 33 28 4 0 136 chain 17973 chr2 243199373 + 63236873 63237191 MER44A 345 - 0 345 132933 28 0 12 26 28 13 153 28 23 28 9 44 18 chain 24214 chr2 243199373 + 63241843 63242123 AluSp 311 + 13 292 109122 115 1 0 164 chain 23276 chr2 243199373 + 63246574 63246854 AluSx4 309 + 11 293 114319 27 0 2 253 chain 10882 chr2 243199373 + 63259244 63259368 L1PA5 6144 + 6008 6132 156651 124 chain 5613 chr2 243199373 + 63295909 63295975 MER33 330 + 0 66 188947 66 chain 35056 chr2 243199373 + 63297159 63297683 MLT2A1 477 - 0 477 76106 60 6 0 10 6 0 12 11 0 10 25 2 179 0 1 13 24 22 168 chain 8808 chr2 243199373 + 63303874 63303982 L1MB2 1706 - 190 298 166608 108 chain 422232 chr2 243199373 + 63314810 63319488 L1PA3long 6157 - 0 4682 9481 2458 0 2 1303 1 0 671 3 5 176 0 1 66 chain 44320 chr2 243199373 + 63324742 63325293 MER41A 554 + 0 554 63805 188 0 2 6 2 1 121 0 1 78 1 2 155 chain 26340 chr2 243199373 + 63365586 63365885 AluYf5 307 - 7 306 98655 299 chain 348434 chr2 243199373 + 63365885 63371389 L1PB1 5432 - 35 4780 11654 6 1 0 21 2 1 21 31 27 24 13 1 14 2 1 44 1 0 16 2 1 11 0 1 41 2 0 6 192 60 23 0 1 25 1 0 5 19 20 212 9 11 99 0 2 81 0 1 12 6 10 587 0 1 289 0 1 80 0 1 426 301 0 143 9 4 198 11 4 16 0 1 6 3 0 6 6 0 98 2 1 243 2 0 466 16 28 123 40 39 53 305 10 18 0 1 14 1 2 321 8 9 9 12 0 6 2 1 742 chain 57493 chr2 243199373 + 63372842 63373537 L1PREC2 3366 - 634 1330 54245 20 1 0 341 0 2 333 chain 22606 chr2 243199373 + 63393827 63394237 L1MA3 4352 - 37 416 117562 20 8 7 6 1 0 23 2 0 23 4 0 44 4 0 73 56 38 64 1 0 81 chain 4281 chr2 243199373 + 63406028 63406097 MSTA 426 + 0 74 203461 15 7 12 47 chain 4453 chr2 243199373 + 63422553 63422607 Tigger2a 444 + 0 55 201314 13 0 1 41 chain 8398 chr2 243199373 + 63424826 63424928 L1MA4 2864 - 224 326 168863 102 chain 5486 chr2 243199373 + 63424983 63425085 MLT1E2 623 - 460 573 190162 35 20 32 31 1 0 15 chain 7714 chr2 243199373 + 63428017 63428105 MSTA-int 1630 + 1538 1626 172841 88 chain 30602 chr2 243199373 + 63430969 63431446 L1MA2 4263 - 123 601 83194 12 0 11 13 2 1 45 7 0 13 0 3 67 10 9 8 1 0 152 17 14 130 chain 520168 chr2 243199373 + 63437611 63443856 L1PA5 6144 + 0 6143 5139 541 8 7 204 16 12 401 13 4 303 1 0 107 5 6 50 0 2 676 6 1 942 1 2 15 6 7 1437 85 0 276 1 0 304 0 4 605 2 0 168 0 1 46 4 0 22 chain 130380 chr2 243199373 + 63455577 63457009 L1PA4 6152 - 9 1441 27995 1432 chain 91646 chr2 243199373 + 63457072 63458124 L1PA5 6144 - 0 1055 39072 484 1 0 362 1 5 204 chain 14707 chr2 243199373 + 63458124 63458287 L1PA5 6144 + 3723 3886 142253 163 chain 98611 chr2 243199373 + 63458287 63459415 L1PA5 6144 + 3954 5082 37123 1128 chain 191791 chr2 243199373 + 63505958 63509091 L1PB1 5432 + 2643 5414 19885 10 0 5 143 0 6 6 19 16 5 1 0 52 0 3 271 0 23 98 0 1 290 1 2 149 18 0 71 3 0 5 0 3 99 13 25 72 365 4 254 15 16 150 3 4 61 5 2 116 0 4 18 6 0 17 1 0 153 0 1 6 5 0 8 0 6 147 0 1 105 0 4 28 1 0 10 1 0 21 1 0 8 1 0 14 2 0 3 2 0 9 2 0 52 2 1 14 2 1 44 1 0 16 28 16 11 28 23 24 1 0 22 1 0 12 1 0 10 chain 26715 chr2 243199373 + 63507284 63507640 THE1A 353 - 0 353 97272 151 2 0 84 11 10 108 chain 24375 chr2 243199373 + 63509362 63509640 AluSg 306 + 3 281 108220 278 chain 33059 chr2 243199373 + 63513339 63513802 LTR7B 505 + 0 505 79119 108 0 10 57 0 38 12 3 27 28 29 0 20 0 1 64 1 0 76 14 13 51 chain 370618 chr2 243199373 + 63531420 63536025 L1PA7 6471 + 0 6459 11073 227 17 2 182 0 1 148 0 3 374 9 12 140 0 13 50 0 27 287 0 3 188 0 1808 32 0 1 20 4 8 50 0 3 58 0 2 463 2 1 568 0 4 154 1 2 121 2 0 154 1 0 11 7 12 154 0 11 283 30 11 33 2 0 68 0 1 114 0 2 582 0 2 69 chain 54486 chr2 243199373 + 63549140 63549895 LTR12D 1347 + 405 1347 56036 107 1 0 4 21 57 11 26 22 31 16 74 274 0 97 124 0 1 140 chain 295767 chr2 243199373 + 63549960 63553635 HERV9-int 5642 + 11 4620 13656 430 0 1 84 5 6 262 4 3 298 13 11 4 1 0 285 0 2 508 0 1 234 16 18 415 4 0 42 1 0 4 1 2 59 66 66 215 0 1 5 1 0 34 17 952 667 chain 2866 chr2 243199373 + 63555533 63555570 LTR12D 1347 + 1039 1075 227573 10 1 0 26 chain 56956 chr2 243199373 + 63560258 63561010 MER4E 760 + 0 753 54557 24 1 0 124 0 10 8 1 0 5 11 5 91 7 0 94 1 3 82 1 0 144 0 5 158 chain 26886 chr2 243199373 + 63561386 63561826 MER4A1 472 - 16 472 96687 51 35 38 96 3 24 21 21 0 54 6 8 55 9 20 89 chain 43854 chr2 243199373 + 63562835 63563386 MER41A 554 + 0 554 64382 50 1 0 29 1 2 327 0 4 35 1 0 107 chain 38775 chr2 243199373 + 63577125 63577583 L1PA6 6164 + 5704 6162 71045 130 0 1 323 1 0 4 chain 92500 chr2 243199373 + 63583046 63584461 L1PA14 3548 + 410 3456 38815 51 3 0 324 5 4 238 0 5 248 6 7 5 1 0 19 4 1649 30 19 15 109 5 1 10 44 43 53 1 0 5 15 17 88 1 0 11 5 1 33 5 3 14 1 0 5 1 0 17 1 0 26 1 4 11 chain 460274 chr2 243199373 + 63615276 63620669 L1PA6 6164 + 0 6159 8392 88 0 735 120 0 4 308 0 1 863 0 3 203 0 2 567 4 0 196 0 1 100 1 0 81 0 5 64 0 7 444 1 0 340 0 3 227 0 4 1136 1 0 203 0 2 50 0 1 310 0 5 86 chain 64880 chr2 243199373 + 63620707 63621849 L1PA15 4387 + 3170 4327 50620 26 21 20 36 3 1 134 0 1 25 0 3 178 7 8 23 51 80 94 0 1 13 52 51 5 0 2 20 3 1 41 1 0 65 8 6 101 1 0 26 2 1 52 2 1 22 4 0 6 14 13 26 21 18 44 3 1 12 chain 117624 chr2 243199373 + 63627700 63629616 L1PA8 5853 + 4268 5853 31916 141 1 2 38 0 1 67 10 6 54 2 0 83 0 1 348 2 0 138 0 1 6 365 34 51 7 10 142 0 6 44 0 1 122 1 0 43 7 5 66 2 1 61 2 1 19 2 1 92 chain 399134 chr2 243199373 + 63636252 63641998 L1PB1 5432 + 19 5420 10134 29 10 11 485 12 15 124 0 1 37 5 19 179 0 6 85 5 15 370 22 8 10 6 5 553 0 6 125 0 3 36 1 2 104 1 0 20 6 9 119 1 3 97 1 0 346 2 1 809 0 3 9 0 3 66 0 4 211 9 10 428 1 0 4 0 1 59 309 0 50 2 0 36 0 4 90 0 1 8 2 1 165 11 11 197 1 16 75 1 2 9 67 0 20 1 0 13 16 11 9 2 0 53 2 1 16 1 0 44 2 1 14 2 0 8 17 8 15 8 5 14 2 0 23 2 1 21 1 0 13 1 0 16 chain 6903 chr2 243199373 + 63648544 63648633 L1MC 810 + 668 756 178159 62 1 0 26 chain 244605 chr2 243199373 + 63678452 63681244 L1PA5 6144 + 3355 6138 16526 574 1 4 2020 2 0 4 3 0 47 7 0 134 chain 14993 chr2 243199373 + 63681266 63681441 L1PA6 6164 + 5782 5957 141340 175 chain 16094 chr2 243199373 + 63681441 63681644 L1PA6 6164 + 5959 6162 138078 203 chain 24586 chr2 243199373 + 63684987 63685281 AluSc 308 + 9 304 107055 19 0 1 275 chain 50797 chr2 243199373 + 63689047 63689639 L1PA5 6144 + 5547 6139 58435 442 3 4 83 1 0 63 chain 18129 chr2 243199373 + 63705217 63705459 L1PB1 5432 + 1709 1952 132522 47 1 0 156 1 3 37 chain 125083 chr2 243199373 + 63705466 63707192 L1PB1 5432 + 1957 3641 29366 180 0 11 229 0 4 114 29 12 22 1 0 81 0 10 36 6 0 163 1 0 15 1 0 96 7 11 73 1 0 77 9 10 154 0 24 117 69 0 245 chain 20229 chr2 243199373 + 63707220 63707482 L1PB1 5432 + 3663 3928 126440 42 0 1 28 9 11 183 chain 113021 chr2 243199373 + 63707482 63709022 L1PB1 5432 + 3929 5427 33370 697 4 0 18 1 0 123 2 0 43 1 0 10 7 8 275 13 11 24 1 0 6 1 0 14 16 10 47 11 10 11 1 0 8 7 8 29 1 0 15 24 12 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 2 0 5 chain 416222 chr2 243199373 + 63734683 63740044 L1PA7 6471 + 1419 6468 9634 1055 6 6 33 14 16 110 0 2 753 9 13 122 1 0 402 7 5 10 0 2 609 318 0 117 0 4 275 2 1 645 0 4 17 2 5 512 3 2 280 0 1 38 11 0 10 chain 4297 chr2 243199373 + 63743420 63743498 L1MA4 2864 - 30 100 203258 17 16 8 45 chain 276996 chr2 243199373 + 63754360 63757572 L1PA5 6144 - 0 3239 14817 11 0 4 139 5 6 678 0 1 6 2 1 19 0 4 520 0 2 125 0 1 1013 0 18 87 2 0 339 1 0 265 chain 486823 chr2 243199373 + 63757858 63763751 L1PA6 6164 + 0 5912 7488 164 14 15 15 1 2 30 24 24 259 2 1 89 4 5 117 0 1 203 16 22 223 0 1 377 0 1 175 1 3 598 0 1 198 0 1 212 1 0 201 1 2 281 1 0 84 0 1 223 1 2 1112 0 1 273 2 1 615 0 3 376 chain 23626 chr2 243199373 + 63776626 63776913 AluSg4 309 + 6 293 112432 130 0 1 108 1 0 48 chain 285110 chr2 243199373 + 63782955 63787082 L1PA10 4194 + 397 4102 14346 6 1 0 5 0 1 75 3 0 36 0 3 11 0 7 524 181 12 442 4 7 51 0 7 28 1 0 49 5 4 101 0 1 69 1 0 183 0 13 116 1 2 74 0 1 306 1 18 6 0 7 42 1 0 12 10 7 38 0 2 13 3 7 19 318 0 24 0 4 52 0 4 506 0 6 147 0 3 12 0 1 407 14 4 209 0 1 20 chain 15210 chr2 243199373 + 63783616 63783797 L1PA10 4194 - 3521 3702 140012 181 chain 38728 chr2 243199373 + 63787670 63788122 L1PA6 6164 + 5709 6161 71112 452 chain 51002 chr2 243199373 + 63795580 63796165 LTR10C 591 - 0 587 58304 81 0 2 504 chain 87561 chr2 243199373 + 63800442 63801509 MER11B 1079 + 0 1064 40546 264 3 0 299 34 32 171 1 3 295 chain 3531 chr2 243199373 + 63806999 63807047 MSTD 398 + 70 118 214847 4 1 0 4 0 1 39 chain 8926 chr2 243199373 + 63814017 63814134 L1PA5 6144 - 7 122 166001 61 8 6 48 chain 490908 chr2 243199373 + 63846858 63854119 L1PA7 6471 + 0 6470 7323 413 0 1 621 0 5 158 0 1 11 0 1 252 32 26 144 0 2 170 0 1 4 1 0 37 1 3 5 2 0 217 0 1 76 1163 0 245 0 4 121 0 2 112 5 0 33 0 1 337 0 3 462 12 16 281 0 1 231 0 2 411 3 1 26 0 3 311 12 0 38 0 1 18 0 2 809 1 5 12 0 8 290 36 387 148 chain 14092 chr2 243199373 + 63849011 63849166 L1PA2 6032 - 1 156 144246 155 chain 136550 chr2 243199373 + 63868312 63871374 L1MA2 4263 - 205 2374 26732 92 1 0 9 2 1 51 1 28 62 0 1 4 21 18 125 10 9 72 7 2 267 0 2 47 1 0 4 0 1 94 0 3 7 4 5 34 5 12 92 33 0 64 44 53 7 6 0 71 0 1 42 13 3 12 15 31 80 10 8 63 1 0 31 36 18 267 1 0 32 4 0 41 10 9 128 888 18 142 3 0 6 chain 3206 chr2 243199373 + 63901547 63901583 L1MB1 2102 + 1960 1996 220833 36 chain 73974 chr2 243199373 + 63911003 63915185 L1MA2 4263 + 668 4114 46527 382 0 1 7 2998 2282 98 1 0 146 9 3 75 1 0 147 3 0 54 1 0 52 52 50 29 1 0 53 28 23 35 1 0 9 chain 11509 chr2 243199373 + 63915968 63916238 MSTD 398 + 72 372 154255 77 57 71 12 16 4 18 9 38 35 6 5 40 chain 4943 chr2 243199373 + 63922536 63922677 MER53 195 + 38 181 195769 21 65 67 55 chain 500392 chr2 243199373 + 63929861 63935895 L1PA4 6152 - 0 6144 6813 6 0 5 832 66 489 568 0 1 252 0 2 937 0 1 259 0 1 597 0 2 341 330 0 41 1 0 1743 9 15 52 chain 29912 chr2 243199373 + 63933731 63934049 AluYb8 318 - 0 318 85062 318 chain 21230 chr2 243199373 + 63941707 63941966 AluSc8 310 + 26 288 123105 106 0 3 153 chain 138828 chr2 243199373 + 63948891 63950433 SVA_F 1814 + 0 1814 26344 697 0 80 79 1 0 24 1 0 66 0 192 39 2 0 97 1 0 523 0 5 12 chain 29573 chr2 243199373 + 63960317 63960635 AluYb8 318 - 3 318 86309 197 3 0 118 chain 28645 chr2 243199373 + 63988611 63989002 MLT2A1 477 - 78 477 90536 6 1 0 43 18 28 117 0 1 24 0 1 9 4 1 169 chain 45628 chr2 243199373 + 63998887 63999552 L1PA16 3655 - 107 797 62376 43 6 9 21 0 2 45 14 12 126 2 0 88 0 2 90 11 22 106 0 2 40 0 4 11 6 5 27 8 14 21 chain 4484 chr2 243199373 + 64003964 64004188 L1MA6 2487 + 2339 2478 200976 40 3 0 15 143 62 4 1 0 18 chain 22180 chr2 243199373 + 64005338 64005629 AluSg4 309 - 8 298 119441 89 10 10 76 1 0 115 chain 13560 chr2 243199373 + 64010094 64010264 L1PB4 2604 + 2111 2281 146132 170 chain 24430 chr2 243199373 + 64019266 64019636 THE1D 372 - 0 372 107916 131 45 53 131 9 1 41 0 2 13 chain 5523 chr2 243199373 + 64024645 64024711 L1M1 2793 - 353 419 189809 66 chain 35145 chr2 243199373 + 64028446 64028942 LTR12F 595 - 0 595 76003 175 1 0 6 11 12 187 25 124 91 chain 2105 chr2 243199373 + 64028826 64028851 LTR12F 595 - 523 548 201215 25 chain 3753 chr2 243199373 + 64032929 64032970 MSTB 430 + 12 53 211086 41 chain 78230 chr2 243199373 + 64033302 64034356 MER11C 1089 - 20 1089 44398 4 0 1 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 72 23 25 12 50 46 149 1 0 65 0 4 62 0 9 246 chain 144337 chr2 243199373 + 64035437 64037039 SVA_D 2077 + 0 2056 25421 4 1 0 15 1 0 6 1 0 3 1 0 850 0 232 108 1 227 611 chain 38898 chr2 243199373 + 64074600 64075046 LTR7 482 - 0 482 70868 56 0 4 130 0 31 35 1 2 224 chain 30353 chr2 243199373 + 64104845 64105163 AluYb8 318 + 0 318 83769 318 chain 484697 chr2 243199373 + 64153653 64159799 L1PA7 6471 + 5 6469 7569 192 15 14 16 49 49 53 41 238 154 5 15 57 1 76 156 2 1 20 1 22 13 1 4 153 0 2 920 0 5 100 1 0 367 8 0 257 7 11 597 7 0 53 0 6 16 0 1 8 0 3 1376 1 11 378 0 1 5 1 0 265 2 1 173 1 0 4 0 1 220 8 7 281 3 4 158 chain 3048 chr2 243199373 + 64167628 64167834 MER6B 211 - 0 186 224030 19 153 132 28 0 1 6 chain 69728 chr2 243199373 + 64215578 64216680 MER11B 1079 + 0 1079 48507 359 1 0 12 4 0 86 64 51 15 0 1 11 15 9 50 0 1 117 2 6 12 65 57 6 0 2 22 8 9 47 3 4 29 1 0 4 0 1 139 1 0 29 chain 84341 chr2 243199373 + 64217952 64222282 HERVK11-int 2540 + 678 2227 41773 59 5 0 13 14 9 4 1 0 9 2 0 21 77 41 44 3 0 12 6 5 46 2937 256 18 17 7 4 1 0 27 14 3 34 21 1 428 16 11 105 1 0 190 6 5 74 4 6 117 chain 65645 chr2 243199373 + 64223265 64224274 MER11B 1079 + 0 1074 50275 84 13 12 361 64 51 15 0 1 12 14 8 50 0 1 68 45 124 7 0 2 21 8 9 53 0 1 37 0 1 132 1 0 24 chain 70742 chr2 243199373 + 64226387 64227847 L1M1 2793 - 992 2132 48044 171 0 2 62 0 4 44 1 2 239 0 1 6 4 1 21 4 0 56 321 18 76 0 4 92 0 1 85 26 23 17 1 7 26 7 6 6 2 0 26 11 10 14 21 16 20 2 0 5 2 0 11 40 27 41 chain 29132 chr2 243199373 + 64232229 64232536 AluYk11 308 - 1 308 88401 307 chain 14850 chr2 243199373 + 64258945 64259103 L1PA2 6032 + 5874 6032 141777 158 chain 102650 chr2 243199373 + 64268490 64269630 SVA_D 2077 - 7 2074 36093 11 2 0 41 0 21 453 0 894 614 0 14 19 chain 22498 chr2 243199373 + 64286160 64286422 AluY 311 + 39 301 118030 262 chain 3606 chr2 243199373 + 64298563 64298653 LTR49-int 1717 + 674 765 213557 17 1 0 21 33 35 18 chain 6826 chr2 243199373 + 64301855 64301934 LTR8 732 - 555 634 178743 79 chain 24553 chr2 243199373 + 64301942 64302300 LTR7 482 - 0 482 107230 49 14 16 127 0 1 25 0 31 8 0 1 72 13 102 50 chain 33261 chr2 243199373 + 64302837 64303296 LTR7B 505 + 0 503 78785 105 0 10 60 15 22 28 3 27 26 0 2 39 1 2 44 1 0 23 0 1 114 chain 241652 chr2 243199373 + 64304008 64306977 HERVH-int 3825 - 0 3221 16687 219 4 6 262 8 218 39 16 18 614 0 1 150 0 1 135 0 4 59 8 13 76 0 4 49 0 1 176 0 1 51 0 1 257 1 0 13 0 2 24 9 0 202 15 0 389 0 3 58 1 0 82 18 42 26 0 17 8 chain 6268 chr2 243199373 + 64306999 64307067 LTR7B 505 - 437 505 183018 68 chain 3085 chr2 243199373 + 64307128 64307166 LTR8A 794 - 755 794 223176 4 0 1 34 chain 21968 chr2 243199373 + 64318881 64319152 AluY 311 + 25 299 120358 106 1 3 125 0 1 39 chain 22965 chr2 243199373 + 64322807 64323075 AluSp 311 - 42 310 115782 268 chain 4077 chr2 243199373 + 64359478 64359559 Tigger4a 237 + 145 227 206244 30 0 8 11 17 10 23 chain 24928 chr2 243199373 + 64388502 64388798 AluSc5 308 - 0 297 105176 147 0 1 149 chain 24397 chr2 243199373 + 64420346 64420621 AluSp 311 - 20 295 108091 275 chain 8253 chr2 243199373 + 64434407 64434703 MSTD 398 - 10 398 169665 54 8 15 21 160 245 53 chain 5353 chr2 243199373 + 64469083 64469426 L1PA12 2803 - 1148 1465 191507 23 240 220 29 2 0 18 4 0 27 chain 33331 chr2 243199373 + 64474382 64474829 MER87B 500 - 48 500 78686 127 25 26 115 0 4 180 chain 39301 chr2 243199373 + 64479547 64480016 LTR7 482 + 0 469 70319 56 3 1 359 15 17 36 chain 260158 chr2 243199373 + 64480031 64483308 HERVH-int 3825 + 0 3474 15689 331 0 6 152 2 0 10 35 32 39 65 0 10 1 0 24 71 0 15 0 37 42 2 1 57 0 1 6 0 2 13 0 3 819 1 5 80 4 31 1098 1 2 298 0 259 37 39 39 25 chain 38498 chr2 243199373 + 64484330 64484780 LTR7 482 + 0 482 71438 254 1 31 134 12 14 49 chain 8352 chr2 243199373 + 64484975 64485154 MER97d 503 - 120 267 169110 23 3 0 14 4 1 26 30 3 44 1 2 34 chain 25390 chr2 243199373 + 64537048 64537347 AluSc 308 + 3 302 102736 299 chain 7866 chr2 243199373 + 64576741 64576886 MER96B 391 - 56 193 171898 41 3 0 27 3 4 34 12 8 14 2 0 9 chain 82855 chr2 243199373 + 64579498 64581322 L1M1 2793 + 492 1884 42396 7 1 0 12 1 0 9 3 0 14 1 0 6 1 0 14 2 0 8 78 57 16 88 30 32 68 51 17 4 1 6 2 0 30 1 0 29 2 0 8 1 0 6 10 5 43 14 11 99 1 0 176 1 0 71 4 0 25 22 17 20 2 1 184 2 0 60 4 1 64 1 9 162 301 0 91 chain 18795 chr2 243199373 + 64625649 64625975 L1MB3 1562 + 1263 1555 130685 89 6 5 64 1 0 6 48 16 81 1 0 20 0 1 10 chain 8710 chr2 243199373 + 64639533 64639670 MLT1B 390 - 219 364 167143 45 11 21 18 2 0 61 chain 28743 chr2 243199373 + 64692636 64693158 MER1A 529 - 4 529 90157 346 59 61 22 77 78 18 chain 164950 chr2 243199373 + 64738076 64740332 SVA_F 1814 - 0 1804 22662 10 2 0 532 143 0 69 276 0 141 0 1 45 47 0 53 0 15 938 chain 5056 chr2 243199373 + 64738623 64738763 SVA_F 1814 - 582 718 79899 46 2 0 8 3 1 81 chain 9172 chr2 243199373 + 64738832 64739086 SVA_F 1814 - 787 927 79899 22 1 0 40 82 19 9 1 0 24 49 0 26 chain 4977 chr2 243199373 + 64738895 64738950 SVA_F 1814 - 673 777 167743 3 0 49 52 chain 6677 chr2 243199373 + 64787137 64787211 MLT2B4 540 - 466 540 179855 74 chain 13805 chr2 243199373 + 64846090 64846604 MER30 238 + 37 238 145253 63 309 0 6 5 0 9 2 6 78 3 0 39 chain 4130 chr2 243199373 + 64856377 64856469 MER58A 224 - 9 102 205510 35 32 33 25 chain 28372 chr2 243199373 + 64955683 64955985 AluYa5 310 + 0 301 91690 132 1 0 169 chain 39582 chr2 243199373 + 64992493 64993216 L1MA3 4352 + 3655 4322 69917 437 40 22 5 2 0 59 89 82 17 14 12 22 27 0 11 chain 20521 chr2 243199373 + 65015346 65015608 L1PA16 3655 - 89 350 125567 156 1 0 105 chain 3328 chr2 243199373 + 65020213 65020258 MLT1J 494 - 360 404 218438 40 1 0 4 chain 42624 chr2 243199373 + 65028056 65028585 MER41A 554 + 0 534 65870 361 0 1 4 6 5 97 0 5 61 chain 7122 chr2 243199373 + 65061190 65061276 HY3 101 - 0 86 176598 86 chain 6819 chr2 243199373 + 65068472 65068549 LTR54 533 - 456 533 178802 77 chain 519956 chr2 243199373 + 65118160 65124209 L1PA5 6144 + 0 6128 5164 267 0 1 364 9 4 349 0 3 160 1 4 13 11 5 544 0 1 193 0 1 610 0 3 165 0 3 216 0 1 263 8 0 73 7 9 149 0 1 587 0 3 43 0 11 571 0 1 76 0 42 64 0 1 190 5 0 303 4 0 63 0 29 213 0 1 528 chain 21631 chr2 243199373 + 65129370 65129634 AluSp 311 - 34 300 121655 135 8 10 121 chain 6308 chr2 243199373 + 65129646 65129720 MER5A 189 - 113 187 182728 74 chain 13458 chr2 243199373 + 65135211 65135455 MSTB 430 + 7 411 146493 17 3 2 96 34 36 16 16 175 62 chain 4438 chr2 243199373 + 65152271 65152326 MST-int 1221 - 121 174 201480 29 2 0 24 chain 6967 chr2 243199373 + 65153722 65153809 MSTA-int 1630 + 1237 1324 177700 87 chain 20595 chr2 243199373 + 65162881 65163288 MSTB 430 + 0 417 125313 45 10 11 67 22 22 12 53 65 7 6 0 89 17 20 79 chain 3325 chr2 243199373 + 65175930 65175966 MER5A 189 + 23 59 218479 36 chain 39417 chr2 243199373 + 65190160 65190694 HERVL-int 5654 - 0 536 70135 108 30 36 77 4 0 315 chain 121793 chr2 243199373 + 65195955 65197372 LTR12C 1709 + 0 1709 30445 660 0 288 146 0 1 17 1 0 5 3 1 106 0 4 244 0 1 206 0 1 29 chain 3283 chr2 243199373 + 65221890 65221994 U6 107 + 11 107 219296 26 27 29 13 18 8 20 chain 23887 chr2 243199373 + 65225088 65225377 AluY 311 + 3 289 110975 128 3 0 158 chain 22880 chr2 243199373 + 65236220 65236529 AluSp 311 + 10 304 116185 32 7 6 50 14 0 206 chain 24821 chr2 243199373 + 65240368 65240655 AluSp 311 - 24 311 105765 287 chain 43519 chr2 243199373 + 65271368 65271910 LTR10A 586 - 13 586 64782 290 1 2 44 5 35 202 chain 21960 chr2 243199373 + 65275635 65275978 THE1B 368 + 0 368 120388 44 23 39 88 1 0 28 34 44 125 chain 29038 chr2 243199373 + 65341695 65342008 AluYb8 318 + 0 311 88816 123 2 0 188 chain 8095 chr2 243199373 + 65342034 65342335 MSTD 398 + 84 398 170513 48 154 168 17 24 23 58 chain 22103 chr2 243199373 + 65354584 65354865 AluSp 311 + 1 286 119767 63 1 6 165 2 1 50 chain 22354 chr2 243199373 + 65366552 65366835 AluSp 311 + 0 293 118684 47 1 6 124 1 0 60 0 6 50 chain 6642 chr2 243199373 + 65381607 65381695 MER5A1 166 + 24 113 180151 57 1 2 30 chain 24992 chr2 243199373 + 65387769 65388090 AluY 311 + 11 310 104841 118 21 0 72 1 0 109 chain 9589 chr2 243199373 + 65393788 65393898 AluYf4 310 + 200 310 162644 110 chain 40776 chr2 243199373 + 65408822 65409307 THE1A-int 1579 + 5 490 68205 485 chain 31468 chr2 243199373 + 65410725 65411074 L1PA3long 6157 + 5796 6146 81697 327 0 1 22 chain 24340 chr2 243199373 + 65417870 65418162 AluY 311 + 18 311 108416 114 0 1 178 chain 4501 chr2 243199373 + 65418603 65418655 MER82 654 + 565 617 200760 52 chain 27571 chr2 243199373 + 65445726 65446038 AluY 311 + 0 308 94430 130 4 0 178 chain 20413 chr2 243199373 + 65449282 65449819 L1MA4 2864 + 2311 2809 125854 23 47 45 118 8 7 119 2 0 6 183 149 31 chain 12845 chr2 243199373 + 65458891 65459082 MER30 238 - 0 238 148870 80 0 6 14 0 31 9 12 0 40 1 23 35 chain 3925 chr2 243199373 + 65460677 65460719 MER66B 489 - 152 194 208498 42 chain 7467 chr2 243199373 + 65474316 65474440 Tigger2 2703 - 70 227 174364 7 1 0 50 0 30 24 1 0 19 9 14 13 chain 89250 chr2 243199373 + 65484082 65485194 L1PA7 6471 - 2 1116 39910 136 4 0 10 4 1 11 1 4 9 1 2 41 0 1 117 2 0 373 1 9 130 7 6 133 1 0 131 chain 24736 chr2 243199373 + 65499181 65499474 AluSp 311 - 19 310 106242 6 5 0 31 0 1 142 0 2 109 chain 18916 chr2 243199373 + 65517050 65517325 Tigger4b 360 - 87 360 130323 20 1 0 106 7 5 52 6 7 83 chain 7667 chr2 243199373 + 65517889 65518003 MER20 218 + 101 218 173124 60 1 0 5 10 14 38 chain 6885 chr2 243199373 + 65536682 65536783 MER2 342 + 220 335 178309 26 0 13 29 9 10 37 chain 24812 chr2 243199373 + 65545125 65545467 THE1B 368 + 0 367 105828 43 0 24 84 0 3 18 10 9 113 1 0 73 chain 120672 chr2 243199373 + 65565455 65566852 SVA_D 2077 + 58 2075 30809 625 0 556 154 20 64 158 0 1 10 4 3 294 0 20 132 chain 109794 chr2 243199373 + 65624904 65627094 L1PB1 5432 + 3848 5423 34260 421 0 1 189 1 5 7 0 4 6 1 0 118 0 1 7 5 15 343 0 14 124 693 67 50 2 1 16 1 0 44 1 0 15 1 0 4 2 0 9 7 0 17 25 20 24 2 0 4 0 1 17 1 0 12 1 0 14 1 0 5 chain 2950 chr2 243199373 + 65669099 65669211 HAL1-2a_MD 234 - 103 217 226082 12 0 3 17 52 0 14 3 54 14 chain 86318 chr2 243199373 + 65674702 65675785 L1MA2 4263 - 601 1678 41035 77 6 2 128 1 0 4 0 1 125 1 0 326 0 1 95 0 1 254 7 4 59 chain 29238 chr2 243199373 + 65703811 65704252 LTR12F 595 - 79 595 87867 151 13 14 27 1 0 105 18 9 19 6 14 14 0 77 23 1 0 63 chain 5762 chr2 243199373 + 65715671 65715745 MIR 256 + 74 148 187516 74 chain 5962 chr2 243199373 + 65717482 65717562 MADE1 96 - 0 96 185584 46 1 17 33 chain 22375 chr2 243199373 + 65729532 65729827 AluSx4 309 + 0 289 118606 53 6 0 71 1 2 5 1 0 158 chain 23827 chr2 243199373 + 65740237 65740543 AluSc5 308 - 10 308 111324 11 9 0 126 0 1 160 chain 12524 chr2 243199373 + 65772519 65772707 7SLRNA 320 - 6 195 150142 110 31 32 47 chain 24016 chr2 243199373 + 65789419 65789803 MSTA 426 - 0 426 110235 109 1 21 39 42 40 80 0 3 5 14 35 94 chain 103553 chr2 243199373 + 65796042 65798329 L1PA15 4387 - 120 1636 35849 50 1 0 10 8 4 18 2 1 43 12 11 26 1 0 122 1 2 47 1 0 27 2 0 14 22 20 20 0 7 20 14 16 55 0 1 35 767 0 68 12 11 296 1 2 21 0 2 146 9 6 225 13 12 178 chain 5302 chr2 243199373 + 65799299 65799420 MLT1B 390 + 27 141 192000 17 19 17 13 7 0 42 6 8 17 chain 28578 chr2 243199373 + 65807515 65807817 AluYf4 310 - 8 310 90833 302 chain 155964 chr2 243199373 + 65827105 65828965 SVA_D 2077 - 0 2015 23862 18 4 0 116 0 20 381 1 0 103 0 1 36 10 9 4 0 1 53 0 78 163 0 1 55 0 2 89 10 0 29 2 0 15 2 0 18 1 2 5 1 0 8 31 23 85 0 40 72 0 40 548 chain 1917 chr2 243199373 + 65828229 65828259 SVA_D 2077 - 722 752 148331 30 chain 14045 chr2 243199373 + 65860593 65860969 L1MA6 2487 - 89 399 144396 19 3 0 39 176 113 139 chain 28289 chr2 243199373 + 65886942 65887251 AluYa5 310 + 0 306 91985 97 1 0 35 2 0 174 chain 64127 chr2 243199373 + 65980113 65980859 L1PA5 6144 - 2 719 50954 7 5 0 317 24 0 393 chain 54338 chr2 243199373 + 65996486 65997144 L1PA7 6471 - 1 649 56141 78 22 8 298 0 4 260 chain 34541 chr2 243199373 + 66031670 66032157 L1MA2 4263 + 3634 4115 76846 28 1 0 37 0 1 109 3 0 64 1 8 75 11 9 93 7 0 47 1 0 10 chain 29054 chr2 243199373 + 66068376 66068686 AluYa5 310 - 0 310 88742 310 chain 17695 chr2 243199373 + 66080208 66080414 L1PA5 6144 + 5929 6134 133716 197 1 0 8 chain 522776 chr2 243199373 + 66116824 66123533 L1PA7 6471 + 3 6470 4888 257 0 1 58 7 23 69 3 5 83 7 22 480 0 1 4 1 0 1254 0 1 109 7 9 147 304 0 106 15 0 47 3 0 415 5 9 169 0 2 120 0 3 364 0 3 72 1 0 861 1 22 236 2 0 239 0 3 207 1 2 213 4 12 71 0 1 510 1 0 96 6 0 6 0 6 130 0 1 18 chain 550408 chr2 243199373 + 66151325 66157471 L1PA3long 6157 - 0 6153 1392 768 0 1 624 1 0 75 9 14 1868 0 1 1323 1 2 1477 chain 11926 chr2 243199373 + 66173545 66173729 MER30 238 - 0 199 152494 69 1 8 8 6 0 26 7 21 67 chain 29726 chr2 243199373 + 66176226 66176544 AluYb8 318 + 0 316 85736 132 2 0 184 chain 544204 chr2 243199373 + 66190202 66196348 L1PA4 6152 - 9 6150 2187 151 7 0 279 1 0 382 0 1 258 0 1 1385 1 2 513 2 0 348 0 1 509 1 0 100 0 1 758 6 5 478 0 1 487 0 1 480 chain 11056 chr2 243199373 + 66208913 66209053 L1PA8 5853 - 0 138 155985 93 1 0 19 2 1 25 chain 7172 chr2 243199373 + 66223733 66223866 LTR9B 643 + 453 566 176257 14 30 16 64 6 0 19 chain 96074 chr2 243199373 + 66255932 66257512 L1PB1 5432 - 9 1413 37800 19 1 0 12 1 0 22 1 0 24 2 0 14 164 8 19 9 1 4 2 0 4 1 0 16 1 0 43 1 0 12 3 5 12 1 0 31 25 19 14 3 2 4 1 0 24 5 0 7 6 9 294 1 9 166 0 1 51 11 12 54 10 7 25 0 4 272 0 1 118 10 5 60 chain 38915 chr2 243199373 + 66262503 66262965 L1PA7 6471 - 1 463 70845 462 chain 24743 chr2 243199373 + 66280576 66280905 Tigger2a 444 - 109 438 106210 216 0 9 11 9 0 93 chain 46818 chr2 243199373 + 66317717 66318251 L1PA5 6144 + 5609 6144 61357 388 1 2 145 chain 30353 chr2 243199373 + 66318256 66318696 L1PB1 5432 + 4663 5103 83767 131 36 40 59 0 1 4 1 0 11 0 4 162 8 0 28 chain 102748 chr2 243199373 + 66321687 66322873 L1PA6 6164 - 16 1211 36064 826 0 4 150 0 5 210 chain 4053 chr2 243199373 + 66330865 66330909 LTR67B 553 + 61 105 206603 44 chain 27712 chr2 243199373 + 66335886 66336257 THE1C 375 + 0 375 93998 180 0 1 4 9 11 8 0 1 110 0 1 34 1 0 25 chain 157699 chr2 243199373 + 66343621 66345345 L1PA3long 6157 - 0 1727 23635 141 0 2 307 0 1 1276 chain 537461 chr2 243199373 + 66366090 66372071 L1PA3long 6157 - 8 6147 3243 441 0 1 393 0 4 674 0 1 281 0 4 129 2 0 928 0 1 108 1 2 2276 1 129 599 0 19 5 0 1 143 chain 17793 chr2 243199373 + 66380525 66380734 L1PA5 6144 + 5929 6138 133436 209 chain 21330 chr2 243199373 + 66387135 66387376 AluY 311 + 57 298 122754 241 chain 548398 chr2 243199373 + 66404302 66410334 L1PA2 6032 + 0 6032 1653 256 1 0 480 1 0 858 1 0 2544 0 1 373 0 1 487 0 1 1031 chain 535988 chr2 243199373 + 66433461 66439501 L1PA3long 6157 + 10 6149 3446 142 0 1 432 3 0 129 0 1 66 0 128 919 0 1 986 0 1 1129 38 0 936 0 1 423 1 6 562 1 4 125 1 0 147 chain 31871 chr2 243199373 + 66471020 66471468 LTR7 482 + 0 482 81061 98 0 2 15 0 51 14 51 0 37 12 44 221 chain 292795 chr2 243199373 + 66471470 66475095 HERVH-int 3825 + 0 3825 13833 377 0 2 153 69 0 38 1 0 10 1 0 24 29 0 15 1 0 1 0 38 30 0 2 8 2 1 56 0 1 7 0 2 13 0 3 119 0 5 778 9 33 299 0 10 819 0 7 7 7 0 7 0 2 253 8 218 169 0 1 90 0 2 225 chain 3620 chr2 243199373 + 66472013 66472060 HERVH-int 3825 + 540 585 213358 30 1 0 10 1 0 5 chain 34750 chr2 243199373 + 66476228 66476634 LTR7 482 + 0 438 76544 212 8 9 43 0 31 143 chain 3329 chr2 243199373 + 66486673 66486715 L1MD2 1676 + 864 906 218415 42 chain 4278 chr2 243199373 + 66532053 66532176 MER33 330 + 119 252 203490 4 1 0 7 0 1 26 0 12 6 11 0 8 28 37 32 chain 28563 chr2 243199373 + 66546780 66547079 AluYa5 310 - 0 299 90906 299 chain 13068 chr2 243199373 + 66547534 66547726 Tigger4b 360 + 133 324 147960 153 7 0 8 7 13 17 chain 47463 chr2 243199373 + 66565804 66566346 L1PA5 6144 - 3 542 60858 6 4 0 329 0 1 203 chain 537618 chr2 243199373 + 66574016 66580151 L1PA5 6144 - 2 6144 3215 7 4 0 1782 0 4 750 1 0 98 0 1 949 1 2 354 0 2 381 0 1 719 3 5 409 0 1 677 chain 14904 chr2 243199373 + 66587335 66587674 L1PB1 5432 - 8 318 141618 20 1 0 13 9 8 13 1 0 23 26 21 22 0 3 5 32 17 42 1 0 69 2 0 9 11 7 8 1 0 9 1 0 21 chain 4943 chr2 243199373 + 66588178 66588236 MSTD 398 + 340 398 195764 58 chain 551864 chr2 243199373 + 66618262 66624282 L1PA2 6032 + 1 6032 1207 588 3 0 798 0 13 2845 0 1 1786 chain 2960 chr2 243199373 + 66700067 66700100 Charlie4a 502 - 28 61 225897 33 chain 172216 chr2 243199373 + 66712234 66714295 L1PA7 6471 - 6 2069 21791 8 3 0 92 9 1 50 0 2 230 2 7 371 0 1 80 1 2 670 1 0 276 0 4 32 0 1 236 chain 3908 chr2 243199373 + 66784599 66784790 L1MB8 1703 - 115 305 208730 24 0 2 22 127 124 18 chain 30130 chr2 243199373 + 66833054 66833372 AluYb8 318 - 0 318 84385 318 chain 512148 chr2 243199373 + 66836778 66842892 L1PA6 6164 - 2 6164 5958 8 3 0 161 2 0 5 4 6 589 0 2 76 0 1 208 1 9 58 0 1 668 0 2 275 0 2 151 5 4 746 5 6 185 9 26 583 0 2 63 1 0 32 2 3 375 0 1 191 0 1 135 0 13 219 0 1 509 0 1 4 1 0 93 0 1 277 1 0 269 1 0 4 0 1 195 chain 301864 chr2 243199373 + 66844252 66848533 L1PA5 6144 - 18 3439 13326 1302 863 0 632 0 1 1032 0 1 342 0 1 110 chain 321866 chr2 243199373 + 66849499 66853565 L1P3 4156 - 40 4153 12527 9 2 0 173 0 1 117 0 1 314 3 1 17 8 6 254 0 32 461 0 1 99 3 1 21 1 2 352 0 1 226 0 1 100 1 0 43 0 1 5 0 2 76 0 1 335 0 1 273 0 10 587 0 5 267 1 0 68 2 1 248 chain 545817 chr2 243199373 + 66854220 66860340 L1PA3long 6157 - 0 6127 1973 1803 0 4 1505 3 4 1465 0 1 286 9 12 822 3 1 224 chain 64012 chr2 243199373 + 66864192 66864990 L1P3 4156 + 3316 4107 51001 161 5 6 177 8 3 152 0 1 117 0 1 61 0 2 9 7 1 11 1 0 89 chain 533144 chr2 243199373 + 66869791 66875875 L1PA4 6152 - 11 6152 3830 137 7 4 4 0 1 687 0 4 30 0 20 264 0 1 173 0 5 224 0 3 218 0 1 426 0 1 255 0 1 424 0 4 415 0 1 430 0 1 709 0 13 521 0 3 815 8 9 337 chain 2838 chr2 243199373 + 66882389 66882419 MLT1A 405 - 246 276 228105 30 chain 20861 chr2 243199373 + 66883551 66883822 L1PREC2 3366 + 2336 2610 124427 34 0 2 23 1 2 213 chain 231889 chr2 243199373 + 66884337 66887720 L1PA13 3608 - 129 3495 17207 13 1 0 18 2 0 4 2 0 13 14 8 27 2 0 5 1 0 29 1 0 28 1 0 60 2 0 108 7 6 32 1 0 81 1 2 23 0 2 86 0 8 25 1 2 49 2 1 170 9 10 31 1 15 5 0 1 70 10 3 77 1 0 62 1 3 67 1 2 91 1 2 67 0 1 193 0 1 19 0 1 8 2 1 290 2 1 188 4 8 403 7 6 23 0 3 188 0 3 205 8 6 90 1 0 19 2 0 34 2 1 18 6 2 16 9 7 10 1 0 13 1 0 10 0 3 111 7 5 68 30 19 22 2 0 12 2 1 19 16 13 19 chain 108904 chr2 243199373 + 66945699 66946881 L1PA2 6032 - 5 1187 34460 1182 chain 29577 chr2 243199373 + 66946881 66947207 L1P1 4361 + 2323 2649 84421 326 chain 3577 chr2 243199373 + 66968322 66968366 L1MB7 1623 - 937 981 214013 44 chain 120228 chr2 243199373 + 66984279 66985972 L1PA8 5853 + 4162 5853 30970 696 0 5 142 5 4 73 6 5 99 2 0 5 21 22 350 2 1 44 2 0 70 16 7 10 0 7 16 23 23 15 20 19 13 0 1 46 2 3 15 chain 7239 chr2 243199373 + 66991063 66991156 MLT1C 463 + 352 445 175840 93 chain 13560 chr2 243199373 + 67005030 67005255 Tigger3a 397 - 24 258 146135 19 41 42 143 5 13 17 chain 30511 chr2 243199373 + 67015245 67015661 L1PA8 5853 - 10 458 83405 83 1 0 19 2 1 39 6 5 16 1 0 72 11 48 82 1 0 83 chain 81918 chr2 243199373 + 67023203 67024109 L1PA3long 6157 - 15 921 42642 241 1 0 465 0 1 199 chain 102356 chr2 243199373 + 67024109 67025229 L1PA3long 6157 + 4145 5265 36181 1120 chain 21752 chr2 243199373 + 67042434 67042701 MSTA-int 1630 + 14 281 121201 267 chain 15202 chr2 243199373 + 67064386 67064819 L1MA3 4352 - 70 470 140768 23 2 0 29 187 154 23 5 7 52 0 1 85 1 3 6 3 0 17 chain 271492 chr2 243199373 + 67082399 67086094 L1P2 5180 - 1034 4655 15113 457 1 0 3 1 0 503 1 0 77 0 4 90 0 1 338 0 1 110 6 0 168 18 21 5 3 0 68 5 4 191 1 0 76 1 0 367 5 16 186 1 2 8 1 0 291 1 0 11 19 20 41 0 3 34 1 0 5 0 1 246 0 15 45 21 0 173 53 0 3 23 0 37 chain 309234 chr2 243199373 + 67135511 67138958 L1PA4 6152 - 1 3447 13034 244 2 1 1890 1 0 914 0 1 396 chain 6024 chr2 243199373 + 67194530 67194602 MER2 342 + 138 210 185027 72 chain 92260 chr2 243199373 + 67205346 67206524 L1PA8 5853 + 4675 5847 38888 312 0 4 18 0 2 497 6 7 49 1 0 44 2 0 71 1 0 13 16 9 39 2 1 19 1 0 87 chain 26156 chr2 243199373 + 67236756 67237138 THE1D 372 - 0 372 99385 35 2 1 63 0 1 26 16 22 34 0 2 113 19 0 16 0 1 58 chain 54576 chr2 243199373 + 67251551 67252165 L1PA5 6144 + 5518 6132 55981 614 chain 8977 chr2 243199373 + 67284867 67284970 L1PA6 6164 + 5930 6033 165731 103 chain 48022 chr2 243199373 + 67295298 67296013 L1PREC2 3366 - 936 1635 60359 68 0 1 181 1 0 123 75 77 146 26 8 95 chain 50120 chr2 243199373 + 67296013 67296805 L1PA14 3548 + 2688 3456 58929 231 0 2 17 3 1 14 2 0 44 13 9 104 14 10 11 9 6 84 1 0 111 16 11 36 4 2 12 9 7 17 4 3 36 chain 61921 chr2 243199373 + 67325137 67325851 L1PA5 6144 - 20 736 51935 127 0 1 277 5 6 305 chain 25540 chr2 243199373 + 67325851 67326150 L1P1 4361 + 696 992 102052 30 3 0 266 chain 97458 chr2 243199373 + 67347824 67348978 L1PA5 6144 - 1 2056 37440 14 3 0 134 1 0 164 0 1 18 1 2 134 1 3 222 0 901 462 chain 74335 chr2 243199373 + 67359207 67360151 L1PA8 5853 - 0 939 46344 92 7 6 14 2 1 52 2 1 5 1 0 74 2 0 46 1 0 47 1 0 53 0 1 283 0 1 90 1 0 76 0 2 95 chain 11277 chr2 243199373 + 67366820 67366979 THE1D 372 - 212 372 155140 88 3 0 7 7 11 54 chain 271575 chr2 243199373 + 67376330 67380607 L1MA1 4479 + 228 4157 15110 307 4 7 84 2 3 33 5 0 20 5 0 6 9 13 25 0 2 5 0 1 28 0 4 19 4 0 116 3 4 78 1 0 100 34 29 13 3 2 82 0 1 4 5 10 138 345 0 54 0 1 36 0 1 312 0 1 61 0 3 252 0 2 44 3 9 38 6 14 252 1 0 22 15 13 96 7 8 21 1 0 66 1 0 16 0 4 83 2 0 33 1 0 56 18 19 71 1 0 8 1 0 27 2 0 9 7 8 139 0 1 33 4 0 76 1 0 14 6 0 124 3 0 131 3 0 193 2 1 25 2 0 16 1 0 71 1 0 19 2 0 16 0 3 16 10 12 54 1 0 7 17 14 73 0 1 37 1 0 29 7 5 25 3 5 9 0 1 5 chain 32059 chr2 243199373 + 67389273 67389648 L1PA7 6471 + 6094 6465 80760 37 1 0 328 3 0 6 chain 63710 chr2 243199373 + 67403535 67404247 L1PA3long 6157 - 0 710 51138 153 0 2 5 3 0 93 1 0 457 chain 3422 chr2 243199373 + 67414219 67414261 LTR16C 481 + 439 481 216732 42 chain 520195 chr2 243199373 + 67417191 67423099 L1PA4 6152 - 249 6152 5137 601 0 1 943 0 4 671 6 1 511 0 1 362 0 1 78 3 0 21 0 5 884 0 1 574 1 0 180 0 1 36 0 1 130 0 1 319 1 0 116 10 0 422 1 0 38 chain 12282 chr2 243199373 + 67425112 67425345 Tigger3a 397 + 63 312 151076 29 56 66 103 1 7 44 chain 3284 chr2 243199373 + 67434954 67435060 MER5A1 166 + 58 165 219295 13 6 7 27 28 0 8 5 33 19 chain 3525 chr2 243199373 + 67464589 67464627 MER20 218 - 87 125 214964 38 chain 61722 chr2 243199373 + 67476857 67477772 L1MA2 4263 - 134 1045 52027 13 4 2 8 1 0 31 0 1 16 7 0 74 19 18 8 1 0 152 20 17 127 2 1 24 0 14 36 7 3 258 0 1 107 chain 330519 chr2 243199373 + 67559048 67562985 HERVH-int 3825 + 0 3825 12184 333 1 0 199 5 0 38 1 0 9 2 1 24 111 0 14 1 0 38 1 0 42 2 1 79 0 1 163 1 2 510 0 2 230 0 5 606 0 1 1527 chain 2832 chr2 243199373 + 67559688 67559764 HERVH-int 3825 + 604 676 228202 14 1 0 13 23 21 4 1 0 20 chain 27322 chr2 243199373 + 67564334 67564726 LTR7 482 + 0 475 95198 69 8 46 60 0 1 48 0 1 38 1 32 19 0 10 95 12 14 42 chain 25563 chr2 243199373 + 67576209 67576555 THE1C 375 - 28 375 101918 142 21 22 4 1 0 93 0 1 85 chain 551785 chr2 243199373 + 67583205 67589394 L1PA3long 6157 + 6 6157 1212 873 0 2 168 0 2 700 0 1 156 1 2 480 45 0 438 0 1 2471 1 0 598 0 1 258 chain 76510 chr2 243199373 + 67598976 67599918 L1PA4 6152 - 11 900 45207 416 0 2 76 61 5 291 0 1 98 chain 37909 chr2 243199373 + 67599918 67600335 L1P1 4361 + 1980 2397 72001 417 chain 31060 chr2 243199373 + 67610528 67610861 L1PA3long 6157 + 5490 5823 82416 333 chain 29778 chr2 243199373 + 67610861 67611189 L1PA3long 6157 + 5825 6153 85550 328 chain 42034 chr2 243199373 + 67645540 67646167 MSTA-int 1630 - 13 648 66577 115 0 1 6 49 50 187 1 0 40 0 1 4 19 25 73 0 1 72 1 0 60 chain 86560 chr2 243199373 + 67708147 67709097 L1PA3long 6157 + 5207 6157 40945 950 chain 27150 chr2 243199373 + 67731238 67731585 THE1A 353 + 0 346 95760 104 17 16 226 chain 172608 chr2 243199373 + 67732318 67734236 L1PA4 6152 - 1 1920 21751 6 2 0 843 0 3 1067 chain 119071 chr2 243199373 + 67734236 67735569 L1PA4 6152 + 2900 4231 31352 309 1 0 480 1 0 542 chain 10089 chr2 243199373 + 67735599 67735723 THE1D 372 + 246 370 160140 124 chain 17108 chr2 243199373 + 67756661 67756940 THE1B 368 - 64 355 135290 38 6 8 18 1 0 10 1 0 16 27 34 11 1 0 116 0 6 34 chain 114292 chr2 243199373 + 67772849 67774375 THE1B-int 1605 - 11 1605 32996 295 3 0 91 8 7 437 15 9 147 1 0 4 5 6 132 8 80 276 0 3 64 1 2 22 4 6 13 chain 512776 chr2 243199373 + 67816066 67822175 L1PA6 6164 + 0 6162 5899 787 0 17 116 0 4 36 0 1 445 0 1 85 7 8 792 0 1 40 0 1 310 1 3 516 17 28 32 1 0 173 0 1 132 0 1 949 0 7 1516 15 16 45 0 7 86 2 0 6 chain 161565 chr2 243199373 + 67850511 67852483 L1PA8A 6298 - 7 1999 23117 13 0 2 85 14 15 510 0 6 169 0 2 142 1 6 280 3 1 230 4 5 456 0 1 13 0 4 52 chain 25492 chr2 243199373 + 67863127 67863411 L1PA4 6152 - 94 378 102266 284 chain 203686 chr2 243199373 + 67881202 67883638 L1P1 4361 + 2 2408 18946 572 1 0 128 18 5 561 0 2 5 2 0 804 16 0 329 chain 7412 chr2 243199373 + 67902332 67902426 MER45A 178 - 16 110 174695 94 chain 4961 chr2 243199373 + 67917888 67917963 MER5A1 166 - 42 118 195580 35 7 8 33 chain 221679 chr2 243199373 + 67924498 67926933 L1PA3long 6157 + 3714 6149 17772 2435 chain 4999 chr2 243199373 + 67941938 67942023 L1PA15 4387 - 73 155 195146 42 17 14 26 chain 522105 chr2 243199373 + 67966102 67972232 L1PA6 6164 - 2 6164 4946 4 1 0 154 2 1 683 2 6 136 0 1 183 3 4 675 2 1 156 0 9 926 1 0 9 0 1 810 0 4 65 10 0 190 0 1 78 7 9 26 0 1 593 4 9 583 0 1 19 0 17 342 7 6 459 chain 7046 chr2 243199373 + 68008021 68008142 Ricksha_c 1012 - 98 214 177151 16 9 6 29 9 7 58 chain 17163 chr2 243199373 + 68034564 68034843 MLT2A2 560 + 0 285 135132 17 0 4 87 12 14 58 1 0 12 39 40 53 chain 259697 chr2 243199373 + 68037171 68041108 L1PB1 5432 + 19 5424 15718 29 7 6 301 7 14 17 10 1790 185 4 10 127 12 5 339 2 0 449 1 0 323 0 1 4 2 3 105 5 0 433 0 1 5 6 5 268 2 0 188 16 13 63 0 2 53 0 13 41 4 3 231 0 1 5 2 1 30 317 26 4 0 1 24 43 35 46 1 0 18 1 0 44 1 0 15 1 0 4 18 8 19 11 8 11 2 0 24 1 0 10 0 1 10 1 0 13 1 0 16 1 0 4 chain 7333 chr2 243199373 + 68055806 68055921 Tigger4a 237 - 0 208 175208 24 11 104 80 chain 4530 chr2 243199373 + 68100265 68100316 MER5A1 166 + 64 115 200456 51 chain 5499 chr2 243199373 + 68110181 68110242 MER53 195 + 131 192 190047 61 chain 37764 chr2 243199373 + 68147288 68147753 LTR10F 562 + 0 550 72472 21 0 5 109 15 96 47 1 0 272 chain 60800 chr2 243199373 + 68161639 68162346 L1PA7 6471 - 1487 2203 52275 209 0 3 33 0 6 465 chain 121385 chr2 243199373 + 68162346 68163803 L1PA7 6471 + 4991 6450 30569 492 0 1 132 7 6 73 9 8 433 0 1 169 0 2 142 chain 64558 chr2 243199373 + 68169673 68170570 L1PA14 3548 + 2456 3342 50774 77 7 6 23 0 2 124 1 0 33 0 1 216 3 1 14 2 0 47 2 0 5 2 0 109 4 0 17 2 0 6 1 0 83 2 1 5 0 4 73 1 2 26 1 0 11 chain 10600 chr2 243199373 + 68197678 68197849 AluJb 308 + 88 280 157824 28 31 52 112 chain 467288 chr2 243199373 + 68227639 68234057 L1PA8A 6298 + 238 6290 8141 5 1 0 15 5 0 8 2 0 33 14 13 18 8 0 78 2 0 14 16 13 76 1 0 215 22 24 58 4 0 267 25 11 25 27 25 86 1 2 144 12 7 304 0 1 376 0 1 156 0 1 91 0 1 4 1 0 50 1 0 210 4 1 6 1 0 5 0 1 169 5 4 28 0 2 141 0 1 176 2 6 20 332 0 44 16 6 180 2 0 6 2 0 73 0 1 304 10 11 122 3 4 188 0 9 65 6 3 281 4 2 163 1 0 227 4 0 7 0 1 207 19 16 270 1 0 169 2 1 502 1 2 25 1 22 249 chain 250194 chr2 243199373 + 68242057 68245101 L1PA6 6164 + 3126 6152 16238 114 0 4 13 11 4 390 0 1 42 3 0 984 0 1 50 1 0 24 0 1 14 0 1 4 22 0 74 0 3 157 4 17 291 2 0 128 16 7 376 0 1 147 5 6 172 chain 3176 chr2 243199373 + 68246001 68246094 MLT1B 390 - 0 96 221409 25 41 44 27 chain 95074 chr2 243199373 + 68248749 68250202 L1MA3 4352 - 24 1484 38072 14 5 4 18 12 10 22 2 0 20 8 4 117 86 61 101 0 5 53 1 0 110 0 4 61 11 29 163 0 3 126 32 30 183 0 13 179 0 1 129 chain 15595 chr2 243199373 + 68263988 68264168 AluSp 311 - 2 178 139598 23 3 0 23 1 0 130 chain 521826 chr2 243199373 + 68290922 68297027 L1PA5 6144 + 0 6144 4980 117 4 18 21 0 12 437 0 2 561 10 1 119 0 1 437 0 4 190 5 7 104 0 1 230 0 1 938 0 1 46 0 5 239 0 4 1887 1 0 424 8 10 184 0 1 95 2 1 46 chain 21193 chr2 243199373 + 68301178 68301543 THE1B 368 + 0 368 123232 73 1 15 18 3 4 64 2 1 49 17 25 57 14 13 25 18 0 24 chain 37147 chr2 243199373 + 68302576 68303061 MER84 505 + 16 505 73311 26 13 14 352 0 2 36 0 1 58 chain 40296 chr2 243199373 + 68310114 68310631 MER1A 529 + 0 529 68884 14 10 22 493 chain 5043 chr2 243199373 + 68318326 68318421 MER96B 391 + 224 330 194707 49 1 0 5 1 0 5 8 21 26 chain 5919 chr2 243199373 + 68335015 68335141 MLT1D 503 - 304 435 185994 14 9 15 13 12 10 21 4 5 53 chain 12978 chr2 243199373 + 68355484 68355748 L1PB1 5432 - 14 261 148317 14 1 0 13 1 0 21 1 0 24 2 0 15 7 4 19 15 6 6 1 0 11 9 8 41 2 5 10 2 1 49 chain 8990 chr2 243199373 + 68368116 68368233 MSTA 426 - 304 426 165656 29 1 5 61 0 1 26 chain 6350 chr2 243199373 + 68401618 68401693 MER2 342 + 134 215 182369 10 0 6 65 chain 28968 chr2 243199373 + 68436208 68436519 AluYa5 310 + 0 310 89141 132 1 0 178 chain 10213 chr2 243199373 + 68468215 68468398 MER2 342 - 6 178 159552 14 1 0 4 35 27 64 2 0 63 chain 18421 chr2 243199373 + 68489081 68489303 AluY 311 + 37 260 131709 95 0 1 127 chain 27428 chr2 243199373 + 68529977 68530277 AluYf4 310 - 9 310 94881 257 0 1 43 chain 3617 chr2 243199373 + 68557030 68557077 MER58B 340 + 153 199 213399 19 1 0 27 chain 266648 chr2 243199373 + 68573905 68577200 L1PA8A 6298 + 2967 6290 15355 143 0 3 238 3 4 341 3 2 177 2 4 946 9 15 554 0 9 86 2 5 74 0 2 578 11 13 21 1 2 106 chain 26920 chr2 243199373 + 68581778 68582080 AluY 311 + 8 311 96554 124 0 1 178 chain 8796 chr2 243199373 + 68600534 68600635 L1PA4 6152 - 39 140 166664 101 chain 496704 chr2 243199373 + 68624886 68631138 L1PA7 6471 - 20 6466 7023 829 1 0 356 1 0 4 0 1 313 0 1 549 0 1 138 1 2 197 2 1 50 2 0 8 0 1 393 0 1 363 0 4 186 0 1 416 1 0 4 0 1 146 1 0 604 8 7 428 18 17 65 0 1 58 0 3 7 7 15 191 5 6 64 0 1 283 4 14 194 0 1 9 18 188 22 10 7 89 19 18 188 chain 516012 chr2 243199373 + 68632040 68638469 L1PA7 6471 + 5 6470 5572 81 0 1 174 3 4 65 3 0 5 6 9 55 1 0 10 1 2 31 0 4 71 10 9 4 0 1 132 0 2 325 1 0 44 19 21 207 2 1 93 0 1 247 0 1 703 4 0 85 0 1 10 0 1 81 1 0 151 2 0 602 0 4 241 1 23 552 2 1 337 0 1 87 0 1 185 0 4 196 1 0 230 1 2 6 4 0 283 0 6 204 30 34 490 5 4 69 8 12 186 10 1 72 chain 17362 chr2 243199373 + 68641355 68641574 Tigger1 2417 + 2147 2364 134623 108 2 0 109 chain 5974 chr2 243199373 + 68641740 68641815 MIR 256 - 111 186 185475 75 chain 11098 chr2 243199373 + 68655842 68656017 MER30 238 - 8 200 155816 35 3 0 66 4 0 6 7 31 54 chain 2494 chr2 243199373 + 68659773 68659831 MER52D 1964 - 806 850 233189 27 19 5 12 chain 3012 chr2 243199373 + 68665941 68665975 MER81 114 + 80 114 224774 34 chain 19857 chr2 243199373 + 68671530 68671805 AluSc5 308 + 4 295 127631 153 0 1 37 21 36 64 chain 117764 chr2 243199373 + 68672965 68674267 L1PA3long 6157 - 15 1317 31871 482 0 1 557 1 0 262 chain 29859 chr2 243199373 + 68688414 68688727 AluYb8 318 - 5 318 85245 313 chain 56110 chr2 243199373 + 68698944 68699675 MER4E 760 - 25 760 55066 112 1 0 161 6 11 5 1 0 50 0 4 21 0 2 193 22 25 132 8 0 19 chain 11303 chr2 243199373 + 68715988 68716114 L1PA3long 6157 + 6031 6157 155051 126 chain 4958 chr2 243199373 + 68720744 68720805 MSTA 426 - 3 64 195594 61 chain 140763 chr2 243199373 + 68735798 68737356 L1PA5 6144 + 4578 6140 26029 713 0 4 845 chain 133488 chr2 243199373 + 68743602 68748537 L1PB1 5432 - 18 2006 27323 10 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 2 0 22 37 27 42 18 16 52 2 0 9 9 5 8 1 0 8 1 0 24 2898 16 145 0 1 146 2 1 178 3 0 21 4 7 101 0 1 365 0 5 126 18 11 249 32 13 21 0 2 154 37 21 16 6 2 29 0 1 56 chain 2791 chr2 243199373 + 68754756 68754938 SVA_F 1814 - 718 777 228875 11 80 0 18 50 7 23 chain 6242 chr2 243199373 + 68760325 68760404 MSTD 398 + 271 350 183230 79 chain 49171 chr2 243199373 + 68767152 68767807 L1PA8 5853 - 10 662 59616 61 11 14 8 1 0 19 2 1 45 0 1 5 1 0 8 7 6 67 2 0 48 1 0 369 chain 11107 chr2 243199373 + 68781584 68781736 L1PB1 5432 - 1506 1659 155779 34 10 11 108 chain 17328 chr2 243199373 + 68781742 68781947 L1PB1 5432 - 1666 1874 134718 29 0 3 176 chain 104938 chr2 243199373 + 68781952 68783471 L1PB1 5432 + 3956 5420 35516 6 0 3 25 0 20 151 2 1 31 12 11 423 2 0 99 30 0 23 12 0 345 18 20 15 8 7 10 1 0 12 4 0 9 2 0 53 2 1 16 1 0 37 5 1 6 1 0 14 1 0 6 17 7 19 2 0 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 16 chain 134957 chr2 243199373 + 68797432 68798960 L1PA5 6144 - 6 1538 27021 141 1 0 309 2 0 393 0 2 487 0 2 152 0 1 38 0 2 5 chain 2740 chr2 243199373 + 68811534 68811637 L2a 937 + 222 327 229617 12 1 0 10 54 57 26 chain 337760 chr2 243199373 + 68824370 68828214 L1PA5 6144 + 2258 6132 11961 906 1 0 281 0 1 62 0 1 166 0 1 234 9 3 566 0 2 434 0 27 350 1 6 834 chain 24471 chr2 243199373 + 68833617 68833923 LTR14A 344 - 8 344 107701 32 0 26 31 3 4 229 0 3 11 chain 5888 chr2 243199373 + 68836386 68836455 L1PA16 3655 - 2997 3066 186302 69 chain 8827 chr2 243199373 + 68839519 68839624 MER41B 635 - 28 133 166513 105 chain 475441 chr2 243199373 + 68840784 68846036 L1PA3long 6157 - 1 5253 7872 2377 1 0 607 0 1 2267 chain 46993 chr2 243199373 + 68847103 68847891 L1PB1 5432 + 4667 5420 61217 137 2 0 8 1 4 105 2 1 181 1 2 8 4 1 24 1 0 9 1 0 9 9 5 8 2 0 48 4 2 18 1 0 44 1 0 11 18 5 30 2 0 5 30 35 7 9 0 17 4 3 10 1 0 16 chain 3712 chr2 243199373 + 68850510 68850553 L1MB7 1623 - 514 557 211751 43 chain 82081 chr2 243199373 + 68855991 68857016 MER11A 1151 - 0 1151 42730 179 0 1 55 0 1 56 5 38 4 0 1 523 0 2 63 2 1 28 2 0 21 8 0 24 0 99 55 chain 24265 chr2 243199373 + 68877093 68877357 L1PA2 6032 + 5764 6028 108872 264 chain 41312 chr2 243199373 + 68890777 68891317 MER41E 591 - 41 584 67518 145 14 17 381 chain 4016 chr2 243199373 + 68903417 68903483 L1PA16 3655 - 1006 1073 207136 28 7 8 31 chain 135648 chr2 243199373 + 68903492 68904999 L1PA3long 6157 - 1 1512 26903 151 1 2 457 0 3 898 chain 129007 chr2 243199373 + 68904999 68906430 L1PA3long 6157 - 3823 5253 28191 1281 1 0 149 chain 68599 chr2 243199373 + 68906438 68907201 L1PA3long 6157 - 5389 6153 48987 615 0 1 148 chain 10022 chr2 243199373 + 68907206 68907331 L1PA16 3655 - 1066 1191 160474 125 chain 13014 chr2 243199373 + 68912899 68913088 L1PA8 5853 - 0 185 148190 93 1 0 19 2 1 52 2 1 8 2 1 10 chain 16720 chr2 243199373 + 68915010 68915344 THE1B 368 + 0 368 136341 103 9 39 27 66 71 66 23 22 40 chain 36118 chr2 243199373 + 68925137 68925596 LTR71A 459 - 0 459 74743 164 2 0 5 0 2 288 chain 271027 chr2 243199373 + 68938657 68941896 L1PA7 6471 - 5 3282 15139 159 0 1 215 0 1 20 1 4 434 1 2 5 0 6 6 1 0 895 0 2 36 11 15 174 0 7 337 0 12 306 6 4 36 0 3 318 0 2 88 1 0 189 chain 3691 chr2 243199373 + 69018681 69018728 Charlie4z 170 - 29 76 212072 47 chain 12100 chr2 243199373 + 69075680 69075935 L1PB1 5432 + 5170 5404 151795 50 6 5 12 1 0 44 1 0 10 55 41 14 3 1 23 1 0 21 1 0 13 chain 33128 chr2 243199373 + 69099643 69100085 MLT2A1 477 + 0 477 79018 171 3 0 59 0 2 151 18 54 40 chain 398564 chr2 243199373 + 69117431 69123453 L1PB1 5432 - 8 5358 10152 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 17 21 10 5 1 0 15 1 0 43 19 17 53 2 0 9 16 11 13 1 0 20 35 11 14 0 1 35 18 19 228 12 9 55 0 1 33 0 3 79 3 0 12 0 1 55 0 3 68 36 26 733 1 0 30 0 1 5 1 13 46 1 5 427 0 1 306 0 3 32 0 4 31 0 30 166 25 26 106 5 0 92 10 1 687 0 2 93 1 3 203 330 4 11 7 0 5 1 0 479 2 3 132 325 0 168 0 3 536 chain 22121 chr2 243199373 + 69142348 69142611 AluY 311 + 43 305 119691 205 1 0 57 chain 150068 chr2 243199373 + 69156299 69157999 L1PA6 6164 + 4455 6159 24602 863 0 4 837 chain 33114 chr2 243199373 + 69182414 69182798 L1PA7 6471 - 7 391 79036 384 chain 13916 chr2 243199373 + 69201947 69202106 L1PA8A 6298 + 6133 6292 144870 159 chain 45720 chr2 243199373 + 69228210 69228777 L1PA10 4194 - 48 616 62297 30 3 0 172 7 11 355 chain 124513 chr2 243199373 + 69231349 69232708 L1PA3long 6157 + 4783 6142 29538 1359 chain 24473 chr2 243199373 + 69349726 69350007 L1PA5 6144 - 2 279 107687 7 4 0 270 chain 8333 chr2 243199373 + 69410008 69410112 U6 107 + 0 104 169205 104 chain 4064 chr2 243199373 + 69429101 69429151 MER96 175 - 116 166 206420 50 chain 140421 chr2 243199373 + 69484232 69486346 L1MA3 4352 + 2217 4352 26085 31 1 0 53 0 1 11 1 17 169 1 6 67 19 10 133 1 0 8 5 4 36 0 1 223 29 31 28 3 11 35 11 16 15 0 1 278 0 1 28 8 11 129 0 3 25 13 22 165 0 1 205 0 2 56 4 8 34 37 14 7 3 0 50 5 8 23 1 8 32 5 1 25 2 0 22 1 0 5 2 1 21 8 7 11 2 0 3 2 0 22 chain 97584 chr2 243199373 + 69508439 69509577 L1PA6 6164 - 4 1146 37403 662 0 4 476 chain 8821 chr2 243199373 + 69567602 69567732 MER85 139 + 1 139 166548 88 3 0 7 2 6 7 0 7 23 chain 18805 chr2 243199373 + 69595243 69595489 AluY 311 + 10 258 130658 29 0 1 166 12 13 39 chain 28365 chr2 243199373 + 69633910 69634283 THE1C 375 + 0 372 91712 182 1 2 6 1 0 160 1 0 22 chain 23738 chr2 243199373 + 69646169 69646488 AluSq10 312 + 5 312 111848 35 0 1 134 21 8 129 chain 21831 chr2 243199373 + 69653929 69654203 AluSg 306 + 11 292 120892 112 2 0 85 0 9 75 chain 15285 chr2 243199373 + 69668344 69668539 LTR49-int 1717 + 163 357 140524 17 1 0 177 chain 26555 chr2 243199373 + 69670151 69670539 LTR7 482 - 9 482 97823 167 21 53 21 7 8 73 0 50 42 6 8 51 chain 256262 chr2 243199373 + 69672361 69676073 HERVH-int 3825 - 263 3825 15919 547 1 0 42 165 0 115 1 2 5 1 0 340 5 6 258 0 1 236 0 4 407 68 66 103 9 0 6 1 2 196 15 0 448 75 39 21 11 160 23 1 0 12 63 5 33 10 12 92 15 16 32 1 0 50 0 2 58 36 13 210 chain 30129 chr2 243199373 + 69676075 69676473 LTR7 482 - 0 482 84388 115 1 2 59 0 1 44 5 37 73 0 50 101 chain 7230 chr2 243199373 + 69676473 69676585 LTR49-int 1717 + 1461 1571 175894 67 16 14 29 chain 13037 chr2 243199373 + 69676735 69676879 L1PA4 6152 + 6002 6146 148092 144 chain 34655 chr2 243199373 + 69676902 69677333 MER41A 554 - 111 552 76683 61 4 5 284 0 9 82 chain 43051 chr2 243199373 + 69677914 69678549 LTR34 700 + 64 699 65354 105 5 6 74 14 16 82 0 1 69 0 1 27 1 0 92 1 0 86 12 10 25 15 14 27 chain 22869 chr2 243199373 + 69689255 69689506 L1PA3long 6157 + 5902 6153 116235 251 chain 9097 chr2 243199373 + 69773791 69773913 MLT1A1 405 + 0 122 165085 36 0 1 15 1 0 70 chain 10111 chr2 243199373 + 69823651 69823779 Tigger1 2417 + 1435 1563 160040 128 chain 5793 chr2 243199373 + 69843228 69843485 L1MB5 1630 + 1512 1618 187224 37 1 0 12 148 0 35 6 5 13 1 0 4 chain 4126 chr2 243199373 + 69848687 69848788 MLT1H2 457 + 350 447 205571 11 2 0 5 1 0 17 33 32 32 chain 107187 chr2 243199373 + 69849032 69850460 LTR12C 1709 + 0 1709 34919 280 6 15 43 0 43 82 0 2 8 11 0 246 0 118 70 2 3 168 0 47 82 24 0 17 11 4 32 0 2 178 0 102 77 7 6 84 chain 82292 chr2 243199373 + 69880906 69881842 L1PA7 6471 - 1490 2425 42629 929 1 0 6 chain 126693 chr2 243199373 + 69881842 69883311 L1PA7 6471 + 4993 6464 28887 628 1 0 516 0 1 55 0 2 269 chain 21213 chr2 243199373 + 69900041 69900290 L1PA7 6471 + 5703 5953 123163 23 0 1 226 chain 28769 chr2 243199373 + 69900290 69900620 L1PA7 6471 + 5963 6295 90020 216 0 2 114 chain 13205 chr2 243199373 + 69900642 69900796 L1PA7 6471 + 6314 6468 147441 154 chain 20035 chr2 243199373 + 69902899 69903149 AluY 311 + 26 293 127025 106 0 1 15 8 24 121 chain 5354 chr2 243199373 + 69915643 69915882 L1MC5 759 - 392 635 191491 39 141 149 16 2 0 23 1 0 4 1 0 12 chain 26225 chr2 243199373 + 69921504 69921809 L1PA4 6152 - 0 303 99111 6 0 5 130 7 0 162 chain 4219 chr2 243199373 + 69975158 69975225 LTR49 580 - 21 90 204305 47 0 1 4 5 6 11 chain 23117 chr2 243199373 + 70096101 70096400 AluSp 311 + 0 301 115050 17 7 6 115 5 8 123 0 1 4 1 0 27 chain 13857 chr2 243199373 + 70235657 70235881 MER30 238 + 0 238 145045 101 12 0 12 16 44 27 0 1 5 3 0 48 chain 12248 chr2 243199373 + 70255680 70255913 MSTD 398 + 0 254 151214 108 38 58 34 22 23 31 chain 2749 chr2 243199373 + 70272386 70272440 MIRb 242 + 46 97 229494 12 12 9 30 chain 14718 chr2 243199373 + 70276172 70276331 L1PA3long 6157 - 0 159 142208 159 chain 22148 chr2 243199373 + 70281441 70281710 AluYc 301 + 4 273 119599 111 3 0 64 6 9 85 chain 34467 chr2 243199373 + 70282454 70282868 L1PA8A 6298 + 5870 6290 76966 180 0 4 118 0 1 17 0 1 99 chain 5918 chr2 243199373 + 70286418 70286487 L1PA7 6471 - 1 70 186009 69 chain 23002 chr2 243199373 + 70295790 70296101 AluSp 311 + 11 305 115607 57 4 0 57 13 1 150 2 1 28 chain 5022 chr2 243199373 + 70308330 70308415 MER72 723 + 585 694 194909 33 2 3 12 7 30 31 chain 26470 chr2 243199373 + 70320703 70321003 AluYk4 311 + 0 299 98168 79 1 0 220 chain 23348 chr2 243199373 + 70347724 70348006 AluSp 311 - 17 300 113929 30 0 1 252 chain 3407 chr2 243199373 + 70353147 70353328 L1MB3 1562 - 7 163 216957 9 1 0 18 72 73 17 35 11 6 1 0 22 chain 2971 chr2 243199373 + 70356721 70356906 L1MB3 1562 - 7 163 225645 10 2 0 12 77 78 17 38 11 6 1 0 22 chain 24151 chr2 243199373 + 70367541 70367834 AluSc5 308 - 12 307 109470 223 0 2 70 chain 138219 chr2 243199373 + 70375277 70376923 LTR12C 1709 + 0 1709 26448 145 1 24 492 9 10 147 0 40 253 1 0 5 3 1 107 0 4 139 2 0 342 chain 61339 chr2 243199373 + 70413567 70414241 L1PA3long 6157 + 5474 6153 52180 154 0 5 520 chain 21457 chr2 243199373 + 70421662 70421965 AluSp 311 - 0 303 122304 46 1 0 180 38 39 38 chain 24085 chr2 243199373 + 70471704 70471989 AluY 311 + 19 305 109829 113 0 1 172 chain 3357 chr2 243199373 + 70481968 70482012 MER34B 572 - 55 99 217933 31 1 0 5 0 1 7 chain 117138 chr2 243199373 + 70493596 70494947 SVA_B 1603 - 0 1603 32077 540 0 241 413 1 0 367 0 3 6 5 14 19 chain 24511 chr2 243199373 + 70494950 70495240 AluSg7 307 - 16 307 107488 164 0 1 126 chain 4845 chr2 243199373 + 70495241 70495294 MLT1D 503 + 434 487 196840 53 chain 24928 chr2 243199373 + 70503308 70503637 AluYk4 311 - 18 311 105177 55 0 1 58 38 1 178 chain 26681 chr2 243199373 + 70555416 70555724 AluY 311 + 2 311 97381 106 1 2 201 chain 54302 chr2 243199373 + 70586320 70586924 L1PA3long 6157 - 0 605 56160 11 0 1 593 chain 34252 chr2 243199373 + 70599350 70599814 L1PB 1623 - 521 1006 77275 31 6 19 110 1 4 45 17 22 254 chain 30557 chr2 243199373 + 70610019 70610451 MLT2A1 477 - 0 477 83330 32 9 8 10 1 0 9 0 39 53 9 8 114 1 0 30 1 5 26 0 1 104 0 5 33 chain 21139 chr2 243199373 + 70621969 70622424 L1PA11 4918 - 289 718 123414 18 147 124 14 5 3 63 2 0 13 2 1 66 0 2 125 chain 276205 chr2 243199373 + 70631146 70636054 L1PB1 5432 + 19 5392 14863 50 4 5 8 0 1 57 0 1 118 7 743 393 1 0 7 4 0 3 3 0 195 0 2 5 0 1 166 536 920 146 1 2 63 3 4 234 2 11 64 0 3 474 347 0 32 4 7 84 0 1 243 0 5 137 0 2 147 0 2 104 310 2 24 26 21 99 0 4 20 0 2 184 1 0 264 0 4 20 1 2 11 7 0 18 1 0 13 20 15 6 2 0 52 2 1 16 1 0 44 1 0 15 2 0 9 5 1 13 20 17 10 2 0 24 1 0 22 chain 155427 chr2 243199373 + 70656620 70658298 L1PA2 6032 - 260 1942 23932 1542 0 4 136 chain 22222 chr2 243199373 + 70658298 70658547 L1PA2 6032 + 5783 6032 119254 249 chain 22398 chr2 243199373 + 70668646 70668889 L1PA2 6032 - 1 246 118491 157 0 2 86 chain 23552 chr2 243199373 + 70668889 70669141 L1PA2 6032 + 5485 5737 112836 252 chain 24331 chr2 243199373 + 70693366 70693661 AluYf4 310 + 8 295 108484 97 0 1 137 7 0 45 2 0 7 chain 4371 chr2 243199373 + 70704682 70704729 MLT1J2 417 + 60 107 202309 47 chain 54172 chr2 243199373 + 70730115 70730716 L1PA4 6152 + 5550 6152 56246 488 0 1 113 chain 7331 chr2 243199373 + 70733824 70733937 MIR 256 - 82 198 175214 17 0 2 29 11 12 56 chain 29247 chr2 243199373 + 70783056 70783368 AluYa5 310 + 0 310 87809 132 2 0 178 chain 4378 chr2 243199373 + 70789157 70789213 MLT1H2 457 + 57 113 202220 56 chain 21186 chr2 243199373 + 70794422 70794914 MER6A 605 - 64 559 123256 227 134 138 22 1 0 4 33 34 33 17 16 21 chain 52259 chr2 243199373 + 70822355 70823025 L1PA8 5853 + 5185 5853 57458 379 1 0 43 12 10 65 1 0 4 1 0 23 0 4 27 2 1 11 10 9 75 0 1 16 chain 6888 chr2 243199373 + 70827630 70827707 L1PA5 6144 - 3 80 178287 77 chain 69892 chr2 243199373 + 70827707 70828486 L1PA5 6144 + 5355 6135 48441 262 0 1 517 chain 14098 chr2 243199373 + 70832781 70832956 Tigger3a 397 + 158 333 144230 175 chain 305561 chr2 243199373 + 70848031 70851886 HERVH-int 3825 + 0 3825 13185 531 1 0 10 1 0 4 0 1 24 1 0 10 1 0 8 62 0 16 154 0 15 1 0 11 7 45 23 2 1 57 0 1 6 0 2 14 0 1 649 9 0 29 0 2 9 1 0 216 4 31 563 0 1 805 0 19 471 0 110 140 chain 4219 chr2 243199373 + 70848622 70848683 HERVH-int 3825 + 475 530 180700 4 5 0 19 1 0 32 chain 5110 chr2 243199373 + 70848780 70848851 HERVH-int 3825 + 652 721 193978 4 1 0 41 1 0 24 chain 3439 chr2 243199373 + 70881744 70881781 MER44B 551 + 73 110 216424 37 chain 24215 chr2 243199373 + 70886005 70886307 AluSq4 311 + 11 311 109119 120 0 1 72 2 0 61 1 0 46 chain 8369 chr2 243199373 + 70894649 70894756 MLT2B2 565 + 0 107 169031 16 1 0 19 0 1 71 chain 3939 chr2 243199373 + 70912663 70912749 MIR 256 + 44 136 208282 39 19 22 6 2 0 13 0 5 7 chain 24980 chr2 243199373 + 70953075 70953347 AluYa5 310 + 38 310 104909 272 chain 78078 chr2 243199373 + 70964007 70964861 L1PA5 6144 + 5284 6138 44475 854 chain 5168 chr2 243199373 + 70965960 70966040 L1PREC2 3366 + 2973 3051 193373 33 6 4 41 chain 2889 chr2 243199373 + 71001196 71001228 MLT2B4 540 + 83 115 227221 32 chain 23530 chr2 243199373 + 71004141 71004429 AluSp 311 + 11 298 112959 121 1 0 166 chain 2889 chr2 243199373 + 71008422 71008469 L1MC4 1079 + 86 134 227207 20 5 6 22 chain 21823 chr2 243199373 + 71025144 71025483 THE1A 353 - 12 353 120930 142 0 1 7 0 1 56 47 48 38 0 1 34 2 0 13 chain 127166 chr2 243199373 + 71025483 71027055 THE1A-int 1579 - 0 1579 28775 578 0 2 102 1 3 123 14 15 739 0 2 15 chain 35538 chr2 243199373 + 71031697 71032442 L1PA6 6164 - 6 444 75493 178 0 1 183 308 0 76 chain 524767 chr2 243199373 + 71069332 71075450 L1PA6 6164 + 0 6161 4705 187 0 1 87 0 2 290 1 0 220 0 17 89 0 10 41 6 0 36 3 14 458 1 0 697 1 0 184 6 7 11 8 0 829 1 2 277 0 1 14 0 7 881 0 4 307 1 0 642 0 6 7 0 1 624 1 2 199 2 0 7 chain 11233 chr2 243199373 + 71087118 71087254 THE1D 372 - 42 178 155297 136 chain 10940 chr2 243199373 + 71092792 71092941 AluSq2 311 + 140 302 156443 14 1 2 49 1 0 57 5 18 22 chain 23222 chr2 243199373 + 71095144 71095421 AluY 311 + 28 298 114584 104 0 1 108 8 0 57 chain 41226 chr2 243199373 + 71099644 71100142 MER9a2 513 + 0 513 67615 212 5 24 27 0 1 60 1 0 122 4 0 67 chain 516435 chr2 243199373 + 71103043 71109213 L1PA6 6164 + 8 6162 5534 155 0 8 65 0 2 135 1 2 139 22 24 29 1 0 552 6 5 174 7 8 147 0 1 417 0 1 457 10 0 860 3 4 70 1 5 594 37 0 67 0 1 942 0 9 848 0 2 101 1 0 301 0 1 19 0 1 4 1 0 4 chain 25593 chr2 243199373 + 71109214 71109538 Tigger1 2417 + 1734 2057 101766 142 6 5 176 chain 22511 chr2 243199373 + 71178755 71179037 AluSp 311 + 0 292 117978 57 0 10 65 2 0 131 0 2 27 chain 23408 chr2 243199373 + 71193421 71193740 AluSp 311 + 8 311 113606 12 6 5 103 15 0 183 chain 74846 chr2 243199373 + 71203924 71204998 LTR13 1007 - 0 1007 46093 31 3 1 97 7 6 160 32 6 7 1 0 12 1 2 56 2 1 237 9 10 24 38 8 239 8 1 4 0 1 31 2 0 73 chain 18726 chr2 243199373 + 71223430 71223652 AluY 311 + 79 302 130887 53 0 1 169 chain 26379 chr2 243199373 + 71223944 71224259 AluY 311 + 1 311 98496 122 1 0 3 4 0 185 chain 354797 chr2 243199373 + 71247529 71251601 HERVE-int 4064 + 0 4064 11481 48 1 0 4 0 1 336 2 0 161 0 1 56 0 1 203 3 0 22 2 1 699 1 2 386 14 7 283 3 0 1186 0 10 33 4 0 37 1 0 587 chain 4704 chr2 243199373 + 71273502 71273559 tRNA-Glu-GAG_ 72 - 15 71 198486 20 1 0 36 chain 240453 chr2 243199373 + 71274018 71276967 HERVE-int 4064 + 0 3287 16746 355 2 9 73 8 0 373 4 1 50 1 0 483 5 25 77 2 1 86 26 1 130 5 368 338 11 5 631 8 0 281 chain 64523 chr2 243199373 + 71276976 71277735 HERVE-int 4064 + 3308 4064 50786 99 2 0 66 1 0 591 chain 3349 chr2 243199373 + 71284787 71284830 L1MA4 2864 + 2573 2616 218062 43 chain 5150 chr2 243199373 + 71302142 71302232 MER103C 291 + 71 176 193548 20 1 0 4 12 28 53 chain 20985 chr2 243199373 + 71311855 71312183 MER51B 395 + 0 385 123974 40 7 26 31 0 6 48 1 2 75 8 23 45 6 22 67 chain 39686 chr2 243199373 + 71313489 71313938 LTR7 482 - 0 482 69773 98 0 2 87 0 31 264 chain 247191 chr2 243199373 + 71314480 71317674 HERVH-int 3825 - 828 3825 16386 993 0 4 284 4 31 774 0 8 122 0 3 12 0 2 7 0 1 58 43 0 38 37 15 14 3 0 9 6 18 24 65 0 10 1 0 38 132 0 310 0 11 87 0 1 123 chain 4980 chr2 243199373 + 71316909 71316973 HERVH-int 3825 - 3245 3364 178000 10 1 0 25 0 56 28 chain 3605 chr2 243199373 + 71317022 71317062 HERVH-int 3825 - 3349 3389 197635 40 chain 40173 chr2 243199373 + 71317676 71318127 LTR7 482 - 0 482 69074 185 0 31 266 chain 128722 chr2 243199373 + 71318652 71320181 LTR12C 1709 - 0 1709 28383 367 1 19 95 0 4 24 0 1 78 8 165 119 1 0 536 1 2 299 chain 16123 chr2 243199373 + 71342854 71343101 L1PA7 6471 + 6218 6465 137985 68 7 9 25 20 22 64 1 0 52 3 0 7 chain 22742 chr2 243199373 + 71349569 71349897 THE1B 368 - 24 367 116860 52 4 5 94 8 6 15 1 0 51 1 2 36 1 2 22 0 15 43 chain 38903 chr2 243199373 + 71358631 71359102 LTR7C 471 - 0 471 70862 471 chain 28176 chr2 243199373 + 71384914 71385336 LTR7B 505 - 9 505 92384 42 14 13 41 11 12 26 1 0 43 0 1 38 8 10 18 3 27 12 0 38 60 0 10 105 chain 246675 chr2 243199373 + 71386595 71391850 HERVH-int 3825 - 0 3389 16416 225 0 2 260 8 218 39 9 11 54 1 0 22 185 20 137 1748 0 539 0 1 189 7 9 95 0 4 284 4 31 81 0 1 133 1 0 366 0 1 321 0 3 13 0 2 7 0 1 43 2 22 35 1 0 4 142 49 13 65 0 10 1 0 10 1 0 38 66 0 96 chain 139400 chr2 243199373 + 71387604 71389208 SVA_D 2077 + 55 2061 26234 508 0 40 88 0 40 46 40 0 127 0 134 16 0 127 117 0 3 10 1 99 651 chain 4860 chr2 243199373 + 71391478 71391550 HERVH-int 3825 - 3182 3280 150027 10 4 36 7 4 0 10 1 0 10 1 0 25 chain 4050 chr2 243199373 + 71391568 71391628 HERVH-int 3825 - 3293 3353 150027 60 chain 31348 chr2 243199373 + 71391912 71392277 HERVH-int 3825 - 91 458 81901 134 0 2 231 chain 28285 chr2 243199373 + 71392316 71392739 LTR7B 505 - 8 505 91991 43 14 13 41 11 12 26 1 0 39 0 1 42 8 10 18 3 27 12 0 38 60 0 10 105 chain 12789 chr2 243199373 + 71419403 71419586 Tigger1 2417 + 54 243 149101 56 0 1 5 2 1 16 3 9 101 chain 238998 chr2 243199373 + 71420505 71424499 L1PA14 3548 - 83 3458 16831 10 6 0 41 17 16 5 1 0 15 4 2 32 6 2 10 1 0 37 289 0 18 0 2 54 1 0 84 1 0 6 2 0 126 2 0 5 2 0 47 19 15 243 34 16 143 2 1 88 0 8 422 0 7 213 0 1 137 2 0 6 9 14 18 1 2 86 322 25 5 1 0 180 14 13 99 0 3 83 0 5 260 0 4 33 0 3 6 14 8 15 14 9 108 2 1 374 4 2 25 41 38 17 1 0 54 0 1 14 3 0 6 2 0 52 chain 5570 chr2 243199373 + 71426113 71426184 Tigger1 2417 + 1879 1947 189380 34 3 0 34 chain 33364 chr2 243199373 + 71448883 71449334 LTR12F 595 + 0 595 78630 56 0 2 14 0 143 118 1 0 57 24 24 181 chain 3863 chr2 243199373 + 71462160 71462206 LTR52 417 - 369 415 209400 46 chain 509082 chr2 243199373 + 71472260 71478686 L1PA6 6164 - 2 6164 6237 363 319 0 88 0 6 336 0 3 50 0 1 4 2 4 1695 0 1 88 2 0 245 0 4 75 3 4 333 1 18 346 0 1 68 0 7 88 0 1 611 1 0 276 1 0 90 1 0 332 2 1 49 0 8 162 0 17 220 1 0 118 8 0 37 2 1 55 0 1 194 4 5 156 chain 28418 chr2 243199373 + 71479001 71479504 L1PA15 4387 - 31 519 91511 27 7 3 10 2 0 46 6 3 22 5 4 24 1 0 9 4 0 22 2 1 46 17 19 16 1 0 58 5 6 107 1 0 27 0 2 13 4 2 21 chain 202801 chr2 243199373 + 71492647 71494909 L1PA4 6152 - 1 2275 19008 112 0 1 658 1 3 69 0 4 935 9 13 417 0 1 61 chain 100005 chr2 243199373 + 71500001 71502817 L1PA8 5853 + 2632 5847 36775 237 1 2 11 5 0 31 0 1 11 4 12 54 1 0 6 0 1 14 0 3 383 3 18 46 1387 1771 94 0 1 155 2 1 80 2 1 39 7 5 69 13 10 52 2 1 19 1 0 87 chain 405050 chr2 243199373 + 71544068 71550241 L1PB1 5432 - 12 5408 9945 16 1 0 13 1 0 21 1 0 24 12 10 4 1 0 5 2 0 30 19 6 10 1 0 45 1 0 15 1 3 59 17 12 13 1 0 19 3 0 7 4 5 76 1 3 6 0 2 5 4 0 14 10 13 168 2 0 111 0 2 20 0 3 54 3 0 53 502 0 49 0 1 352 0 4 91 0 1 145 0 1 4 2 1 183 13 5 131 5 0 422 3 1 346 1 0 10 1 0 206 1 0 40 5 1 86 0 1 514 0 2 40 0 4 18 1 3 133 1 3 133 0 69 129 17 13 22 13 21 206 312 0 429 0 4 200 6 5 71 0 1 137 8 9 47 3 4 25 13 0 196 1 3 27 chain 40162 chr2 243199373 + 71544949 71545431 MER9a1 513 - 0 501 69094 94 3 0 152 1 23 232 chain 24766 chr2 243199373 + 71561771 71562071 AluY 311 + 0 303 106076 47 0 1 14 0 3 60 2 1 177 chain 24028 chr2 243199373 + 71563218 71563530 AluSp 311 + 0 310 110170 7 1 0 134 0 1 93 2 1 37 9 8 29 chain 7064 chr2 243199373 + 71606885 71606986 U6 107 - 1 105 176989 57 4 7 40 chain 250454 chr2 243199373 + 71618070 71622486 HERVK22-int 3844 + 8 3844 16215 32 3 0 99 1 4 90 0 2 55 0 1 337 0 14 9 0 1 533 1 0 13 50 55 300 8 17 98 1 6 145 8 13 107 13 14 126 0 3 133 1 7 59 0 2 226 1 0 276 0 6 129 1 0 21 8 9 90 1 17 36 1 2 49 1 0 24 11 10 20 2 0 39 19 14 16 0 1 24 159 120 18 11 7 29 1 0 4 797 193 87 1 0 81 0 2 11 chain 565433 chr2 243199373 + 71638604 71644631 L1HS 6032 - 0 6030 187 2645 0 2 2801 0 1 581 chain 29681 chr2 243199373 + 71667719 71668037 AluYb8 318 + 0 318 85899 318 chain 81890 chr2 243199373 + 71671563 71672723 MER11A 1151 + 0 1151 42809 79 0 8 143 0 4 60 0 11 11 35 0 50 5 7 17 0 1 29 3 0 129 0 5 5 6 0 9 2 0 107 1 0 144 0 1 42 3 0 12 36 0 11 0 35 74 0 1 75 0 5 32 0 4 40 chain 2034 chr2 243199373 + 71671866 71671889 MER11A 1151 + 328 351 238318 23 chain 48284 chr2 243199373 + 71724777 71725454 PABL_B 668 - 0 668 60259 190 13 39 7 26 0 9 6 0 65 9 8 72 1 0 45 1 0 233 chain 133300 chr2 243199373 + 71769504 71770985 SVA_C 1631 - 2 1574 27368 593 0 91 131 0 1 430 1 0 326 chain 25504 chr2 243199373 + 71850305 71850587 L1PA2 6032 - 2 283 102204 12 1 0 269 chain 66342 chr2 243199373 + 71880214 71880942 L1PA4 6152 + 5415 6143 49932 728 chain 128230 chr2 243199373 + 71884048 71885610 THE1A-int 1579 - 5 1579 28513 72 0 2 60 1 0 418 0 1 12 17 25 967 0 2 15 chain 28936 chr2 243199373 + 71885610 71885964 THE1A 353 - 0 353 89286 243 1 0 110 chain 24075 chr2 243199373 + 71936641 71936932 AluSg7 307 - 2 296 109902 27 1 3 143 0 1 120 chain 29819 chr2 243199373 + 71957009 71957382 THE1C 375 - 0 375 85379 88 0 1 104 0 1 181 chain 26040 chr2 243199373 + 71960891 71961255 THE1C 375 - 0 375 99858 26 2 1 195 7 11 33 4 7 32 0 5 65 chain 28227 chr2 243199373 + 71966702 71967127 L1PA11 4918 - 411 856 91216 19 1 0 12 3 1 68 2 0 11 9 8 52 0 5 6 2 1 9 0 1 4 0 19 137 0 1 41 4 5 45 chain 91611 chr2 243199373 + 71967127 71968288 L1PA11 4918 + 2883 4053 39090 296 1 3 242 19 27 215 2 1 386 chain 10608 chr2 243199373 + 71985103 71985281 MER2 342 + 144 319 157785 9 1 0 125 29 27 14 chain 4783 chr2 243199373 + 71986578 71986889 L1MD2 1676 + 571 869 197534 30 3 0 7 148 153 19 8 0 16 35 34 22 1 0 6 6 1 10 chain 58633 chr2 243199373 + 71999064 71999999 Tigger3b 1229 + 43 1052 53622 100 0 26 93 18 23 6 6 0 4 1 0 34 2 4 233 1 7 14 0 1 31 12 20 29 10 17 12 0 1 29 1 0 11 49 66 188 12 21 39 chain 30720 chr2 243199373 + 72047726 72048102 THE1C 375 - 0 375 83002 25 1 0 350 chain 4503 chr2 243199373 + 72060597 72060744 HAL1-2a_MD 234 + 13 124 200750 10 7 1 23 3 0 8 22 7 18 31 19 25 chain 5767 chr2 243199373 + 72091724 72091861 MER20 218 - 11 136 187462 38 50 40 40 2 0 7 chain 5086 chr2 243199373 + 72127518 72127579 MIR 256 + 91 152 194218 61 chain 148660 chr2 243199373 + 72140856 72142501 L1PA3long 6157 - 0 1638 24793 6 8 0 618 0 1 1013 chain 57791 chr2 243199373 + 72204700 72205370 L1PA5 6144 - 0 668 54089 11 3 1 656 chain 228061 chr2 243199373 + 72206869 72210198 L1PB3 3668 + 157 3620 17415 18 0 2 5 3 1 136 21 22 131 1 0 9 3 4 347 0 227 106 0 1 39 3 0 20 1 3 44 0 3 36 5 6 79 21 0 291 12 17 329 20 17 8 0 3 50 73 12 111 0 1 80 6 5 156 6 0 115 1 0 11 0 12 51 1 0 139 6 7 60 0 1 57 1 0 55 1 3 20 4 7 276 1 0 101 1 0 87 21 5 18 5 3 24 3 1 37 7 3 13 1 0 13 7 4 14 1 0 7 chain 26245 chr2 243199373 + 72214576 72214886 AluSp 311 - 1 311 99032 310 chain 5860 chr2 243199373 + 72214951 72215019 L1PA7 6471 - 15 83 186587 68 chain 6813 chr2 243199373 + 72226896 72227000 MER45A 178 + 65 170 178856 56 10 11 38 chain 543309 chr2 243199373 + 72243085 72249090 L1PA3long 6157 - 0 6147 2295 11 0 9 2868 0 4 94 1 0 2267 8 136 403 0 1 211 0 1 142 chain 3617 chr2 243199373 + 72265975 72266015 MER20B 722 - 52 92 213396 40 chain 28762 chr2 243199373 + 72278230 72278823 MER4A 717 + 0 709 90056 91 0 1 31 12 7 24 27 69 102 1 12 23 6 12 8 0 4 11 11 6 34 1 3 32 116 176 63 chain 26580 chr2 243199373 + 72282311 72282616 AluYk4 311 - 6 311 97724 305 chain 36749 chr2 243199373 + 72282966 72283384 L1PA5 6144 - 2 420 73876 142 1 0 170 0 1 105 chain 554535 chr2 243199373 + 72291105 72297127 L1PA2 6032 + 0 6032 883 185 0 1 511 0 7 2307 0 5 2553 0 2 296 5 0 165 chain 3271 chr2 243199373 + 72298885 72298921 MLT1A1 405 - 369 405 219588 36 chain 73306 chr2 243199373 + 72300196 72301218 MER11A 1151 - 4 1151 46879 72 5 9 78 6 7 60 0 1 2 8 0 29 27 58 138 10 9 145 0 1 94 0 1 149 4 0 15 4 0 20 7 3 13 1 0 9 0 4 72 0 104 54 chain 2956 chr2 243199373 + 72308288 72308325 MER52A 1651 + 789 840 225965 20 0 14 17 chain 102495 chr2 243199373 + 72313836 72315149 LTR12C 1709 + 0 1709 36133 104 5 4 103 0 9 89 0 1 4 1 0 334 0 485 91 0 4 212 101 0 269 chain 3905 chr2 243199373 + 72314838 72314880 LTR12C 1709 + 1397 1439 207418 42 chain 87417 chr2 243199373 + 72338458 72339547 MER11B 1079 + 0 1079 40597 259 3 0 413 1 0 48 1 0 52 6 0 170 1 0 114 0 2 21 chain 4975 chr2 243199373 + 72348784 72348863 L1MD 993 + 490 569 195414 17 1 0 33 6 7 22 chain 2897 chr2 243199373 + 72352539 72352689 L1MD2 1676 + 1451 1599 227084 18 103 101 29 chain 50494 chr2 243199373 + 72412873 72413451 L1PA5 6144 - 0 577 58653 253 0 1 14 4 0 190 0 2 117 chain 2678 chr2 243199373 + 72414722 72414765 MER52D 1964 - 813 856 230456 13 2 0 8 0 2 20 chain 29642 chr2 243199373 + 72435372 72435774 L1PA16 3655 - 63 460 86094 14 3 0 113 0 1 172 10 8 83 1 0 6 chain 56348 chr2 243199373 + 72443363 72444053 L1PA8A 6298 + 5510 6203 54937 162 0 2 228 1 2 299 chain 78548 chr2 243199373 + 72455406 72456268 L1PA4 6152 - 9 873 44243 251 0 2 611 chain 19684 chr2 243199373 + 72461253 72461496 AluSg7 307 - 47 292 128148 118 4 5 31 0 1 90 chain 52828 chr2 243199373 + 72461528 72462387 L1PA15 4387 + 3506 4356 57120 84 0 2 16 2 1 130 0 2 72 2 7 13 5 1 30 0 1 15 14 12 13 13 22 5 1 0 22 0 3 46 6 0 127 12 11 46 1 0 12 12 8 10 1 0 50 6 3 44 3 1 14 5 0 27 chain 9778 chr2 243199373 + 72470186 72470305 THE1C 375 - 0 121 161708 63 0 2 56 chain 47913 chr2 243199373 + 72470305 72470880 L1PA6 6164 + 5588 6160 60548 566 3 0 6 chain 32726 chr2 243199373 + 72480104 72480684 L1PA15 4387 + 3785 4356 79648 7 0 2 16 8 10 42 0 4 25 3 1 41 6 5 16 0 3 147 9 8 19 1 0 54 1 0 18 20 15 49 16 14 33 3 1 9 10 5 27 chain 2130 chr2 243199373 + 72492093 72492358 THE1D-int 1627 + 1 265 115900 10 2 1 12 1 0 97 3 4 140 chain 223030 chr2 243199373 + 72492399 72494850 L1PA3long 6157 - 15 2466 17709 1507 1 0 690 0 1 253 chain 675 chr2 243199373 + 72494863 72494947 THE1D-int 1627 + 291 375 115900 84 chain 226140 chr2 243199373 + 72524629 72528112 L1P2 5180 - 2019 5177 17522 210 11 25 141 1 4 33 0 1 328 0 1 16 6 10 73 3 1 374 0 2 681 37 1 146 7 17 6 24 0 42 1 0 4 0 1 230 12 27 39 12 9 143 130 54 27 1 0 8 12 2 58 19 0 86 244 48 48 31 25 42 1 0 48 5 4 143 chain 118111 chr2 243199373 + 72549734 72551117 L1PA7 6471 + 5075 6464 31769 484 0 2 33 0 5 22 1 0 124 1 0 562 1 2 155 chain 250322 chr2 243199373 + 72595295 72598132 L1PA5 6144 + 3283 6138 16226 1058 0 4 640 0 1 1023 0 13 116 chain 23835 chr2 243199373 + 72599985 72601430 L1MA2 4263 + 3153 4023 111280 129 2 0 60 1045 485 48 15 9 63 5 0 9 11 9 58 chain 4188 chr2 243199373 + 72603402 72603453 L1MEf 1413 - 399 450 204722 51 chain 7142 chr2 243199373 + 72628814 72628902 L1PB4 2604 + 2405 2493 176459 88 chain 539997 chr2 243199373 + 72630859 72636998 L1PA4 6152 + 7 6143 2817 701 0 1 535 0 1 177 0 5 1738 1 0 69 12 2 542 0 1 2364 chain 448224 chr2 243199373 + 72647367 72664789 L1PA7 6471 - 4 5772 8807 6 4 0 374 6 7 459 1 0 68 11672 0 207 1 2 229 0 1 46 15 16 39 5 6 140 13 10 5 0 3 264 0 3 534 2 1 1013 11 12 290 0 19 81 11 0 98 0 1 780 1 0 373 1 2 124 11 17 538 chain 141283 chr2 243199373 + 72648774 72650520 LTR12C 1709 + 0 1709 25939 260 0 1 221 0 1 179 1 0 15 2 1 159 1 0 15 78 0 117 0 41 101 1 0 6 2 0 107 0 4 481 chain 4391 chr2 243199373 + 72649627 72649705 LTR12C 1709 + 734 812 100219 78 chain 34686 chr2 243199373 + 72659426 72659826 L1PA7 6471 - 371 771 76644 400 chain 6791 chr2 243199373 + 72659837 72659920 L1PA7 6471 - 784 869 179019 71 0 2 12 chain 20295 chr2 243199373 + 72667713 72668091 L1PREC2 3366 + 139 497 126242 31 1 0 9 6 5 15 8 3 7 1 0 11 1 0 13 1 0 12 1 0 12 2 0 33 13 12 102 1 0 61 13 8 24 chain 15334 chr2 243199373 + 72668111 72668302 L1PA13 3608 - 2779 2976 140383 67 0 1 22 0 5 102 chain 114195 chr2 243199373 + 72671034 72672589 THE1B-int 1605 - 13 1605 33029 272 1 2 87 4 5 88 1 0 409 42 41 237 3 28 44 0 3 266 7 11 57 3 11 6 3 0 25 chain 22126 chr2 243199373 + 72672612 72672937 THE1B 368 - 23 368 119679 95 31 41 9 4 0 34 1 0 107 0 15 44 chain 208092 chr2 243199373 + 72686199 72688484 L1PA3long 6157 + 3859 6144 18631 87 0 1 1124 1 0 1073 chain 100082 chr2 243199373 + 72697616 72698730 L1PA4 6152 - 18 1138 36754 19 0 1 307 0 1 504 0 4 284 chain 46885 chr2 243199373 + 72711307 72712238 L1PA8A 6298 - 10 597 61321 74 336 10 282 0 5 45 22 0 77 1 0 94 chain 46145 chr2 243199373 + 72766928 72767432 L1PA3long 6157 - 0 506 61899 233 0 2 271 chain 26759 chr2 243199373 + 72768120 72768476 THE1A 353 + 0 353 97132 105 6 5 168 1 0 38 1 0 37 chain 74408 chr2 243199373 + 72781890 72782758 L1PA6 6164 - 3 871 46311 145 0 6 6 7 1 674 0 1 31 1 0 4 chain 2538 chr2 243199373 + 72796642 72796709 MER102b 334 - 196 260 232685 22 18 18 18 3 0 6 chain 45821 chr2 243199373 + 72813917 72814532 L1PA16 3655 + 2972 3578 62207 8 4 0 221 1 0 77 15 13 77 3 1 41 0 1 6 1 0 161 chain 5130 chr2 243199373 + 72836591 72836658 SVA_E 1901 + 1839 1901 193785 55 5 0 7 chain 19657 chr2 243199373 + 72843630 72843906 THE1B 368 - 90 368 128231 99 8 7 121 6 11 27 2 0 13 chain 59068 chr2 243199373 + 72843916 72844626 THE1B-int 1605 - 11 721 53355 710 chain 48319 chr2 243199373 + 72867387 72868213 L1PA13 3608 + 138 1331 60229 25 1 0 14 0 1 23 28 17 50 0 1 18 13 11 19 0 1 95 1 0 15 1 0 17 2 0 16 3 2 16 0 3 16 7 5 13 6 4 14 1 0 18 45 428 65 0 2 96 0 5 8 6 1 174 chain 426320 chr2 243199373 + 72868226 72875090 L1P2 5180 + 2 5175 9390 61 1 2 85 1 0 26 7 9 9 1 0 53 6 5 209 1 0 49 6 5 98 0 1 173 1 0 6 1 0 245 1710 0 152 1 4 395 0 9 609 0 2 118 6 3 454 2 1 404 1 0 396 8 0 177 0 1 484 0 16 86 0 8 282 1 0 32 2 1 413 5 4 47 1 0 39 chain 148549 chr2 243199373 + 72869274 72870892 L1PA3long 6157 + 4527 6147 24812 859 0 2 759 chain 46002 chr2 243199373 + 72880199 72880695 L1PA3long 6157 + 5661 6157 62040 496 chain 24489 chr2 243199373 + 72883974 72884270 AluSp 311 - 6 302 107603 296 chain 190244 chr2 243199373 + 72929049 72931094 L1PA2 6032 - 0 2045 20021 2045 chain 136539 chr2 243199373 + 72931094 72932576 L1PA2 6032 + 2503 3987 26736 1266 0 2 216 chain 18913 chr2 243199373 + 72940563 72940768 L1PA3long 6157 - 0 205 130332 205 chain 8729 chr2 243199373 + 72954036 72954167 MER2 342 + 139 271 167029 65 12 13 54 chain 13136 chr2 243199373 + 72957320 72957675 MLT2D 439 + 4 356 147700 28 11 12 124 158 154 34 chain 17146 chr2 243199373 + 72971136 72971361 Tigger3a 397 + 126 359 135182 35 0 10 116 2 0 72 chain 3707 chr2 243199373 + 72976584 72976637 MADE1 96 + 2 53 211843 28 0 1 16 3 0 6 chain 3207 chr2 243199373 + 72976644 72976726 MADE1 96 - 13 95 220770 15 18 0 13 7 25 29 chain 90560 chr2 243199373 + 73011918 73013050 THE1A-int 1579 - 0 1144 39451 294 1 2 172 13 2 119 1 0 303 0 2 72 0 21 157 chain 9797 chr2 243199373 + 73034673 73034829 L1MA2 4263 + 3957 4105 161606 9 1 0 92 19 12 35 chain 9467 chr2 243199373 + 73050928 73051068 MER2 342 + 80 220 163235 22 1 0 7 5 6 105 chain 43466 chr2 243199373 + 73101949 73102492 MLT2A2 560 - 0 560 64852 70 0 1 72 0 11 214 1 4 124 0 2 62 chain 3759 chr2 243199373 + 73110209 73110251 MSTD 398 - 355 397 210966 42 chain 18491 chr2 243199373 + 73111158 73111400 THE1B-int 1605 - 1358 1605 131531 123 10 13 95 1 3 13 chain 3371 chr2 243199373 + 73202966 73203003 Kanga11a 569 + 166 203 217661 37 chain 15637 chr2 243199373 + 73255095 73255367 Tigger3b 1229 + 941 1229 139477 39 0 10 21 2 7 141 51 52 18 chain 2874 chr2 243199373 + 73255606 73255684 MER45C 884 + 671 748 227467 18 35 34 25 chain 6852 chr2 243199373 + 73278697 73278779 MLT1A1-int 1737 - 1637 1719 178565 82 chain 84024 chr2 243199373 + 73346312 73347265 LTR5B 1012 - 0 960 41895 81 0 6 530 0 1 342 chain 13462 chr2 243199373 + 73351162 73351327 MLT1B 390 - 2 168 146476 48 0 1 117 chain 39686 chr2 243199373 + 73354429 73354856 L1HS 6032 - 0 427 69772 427 chain 30707 chr2 243199373 + 73387643 73388088 MER1A 529 - 0 488 83022 15 0 1 46 10 9 277 11 14 28 16 56 42 chain 134731 chr2 243199373 + 73407872 73409375 L1PA5 6144 + 4637 6140 27071 439 0 3 1052 3 0 9 chain 28791 chr2 243199373 + 73430946 73431256 AluYg6 310 + 0 307 89941 301 3 0 6 chain 4857 chr2 243199373 + 73525811 73525869 U6 107 + 1 59 196699 58 chain 47280 chr2 243199373 + 73539016 73539533 L1PA3long 6157 - 12 529 60980 517 chain 3498 chr2 243199373 + 73576827 73576870 L1ME3A 1206 - 845 888 215385 43 chain 25257 chr2 243199373 + 73580691 73580972 L1PA5 6144 - 7 288 103435 281 chain 31723 chr2 243199373 + 73616233 73616735 L1PA17 2846 - 153 668 81294 44 1 0 17 1 0 32 1 0 56 0 1 10 2 1 15 5 1 8 3 0 9 5 1 122 1 0 69 42 70 59 chain 3542 chr2 243199373 + 73620389 73620462 L1MB8 1703 - 1032 1108 214679 12 21 24 40 chain 10264 chr2 243199373 + 73623001 73623185 MER30 238 - 0 238 159310 29 10 13 38 0 6 22 4 25 6 0 3 45 12 33 18 chain 5723 chr2 243199373 + 73626302 73626424 L1MC1 2226 - 1892 2021 187896 12 7 11 67 23 26 13 chain 13319 chr2 243199373 + 73638179 73638591 MLT1C 463 + 32 462 147013 46 51 59 26 151 162 13 6 5 119 chain 15653 chr2 243199373 + 73654636 73654816 L1PA7 6471 - 20 200 139420 180 chain 6178 chr2 243199373 + 73673922 73673999 MER5A1 166 + 49 127 183763 35 0 1 42 chain 540525 chr2 243199373 + 73687581 73693778 L1PA4 6152 + 2 6151 2728 840 17 0 59 1 0 334 1 2 69 0 1 4 1 0 367 1 0 1069 0 1 9 0 5 462 0 6 309 0 1 897 0 1 169 42 0 691 0 4 227 0 1 467 7 0 154 chain 6910 chr2 243199373 + 73695541 73695831 L1MB3 1562 - 17 281 178113 17 8 7 29 153 123 17 1 0 37 7 13 21 chain 31676 chr2 243199373 + 73705814 73706225 L1PA8 5853 - 3 406 81364 90 1 0 19 8 7 38 8 6 8 1 0 72 2 0 46 1 0 117 chain 546884 chr2 243199373 + 73707203 73713221 L1PA2 6032 - 1 6027 1843 254 1 2 2666 0 6 1548 1 0 974 0 1 507 0 1 67 chain 20386 chr2 243199373 + 73726343 73726713 L1MA1 4479 - 327 682 125942 10 4 3 32 2 0 29 1 0 9 1 0 117 3 0 6 11 10 10 6 5 5 0 1 56 1 0 14 24 19 29 chain 57558 chr2 243199373 + 73730242 73730877 L1PA3long 6157 - 15 650 54205 635 chain 519547 chr2 243199373 + 73731863 73738750 L1PA7 6471 - 5 6468 5209 143 16 16 39 6 13 315 0 1 12 0 1 224 0 2 79 1 0 33 86 14 26 0 1 348 0 4 327 0 1 190 0 8 255 0 2 211 1 0 198 0 1 189 1 5 311 2 0 338 416 0 217 28 0 305 26 0 280 20 10 562 0 43 313 8 14 40 0 1 268 20 21 353 26 54 332 0 1 82 0 19 9 0 1 66 2 1 146 0 1 17 chain 4488 chr2 243199373 + 73732759 73732812 L1PA7 6471 - 3376 3429 200922 53 chain 23863 chr2 243199373 + 73748587 73748892 AluY 311 + 6 297 111114 127 14 1 147 1 0 16 chain 533496 chr2 243199373 + 73765532 73771639 L1PA4 6152 + 7 6139 3769 928 0 9 509 0 4 343 0 2 272 4 0 459 5 7 595 0 5 893 1 0 25 0 6 575 1 0 735 3 5 256 1 0 330 0 1 145 0 1 27 chain 13245 chr2 243199373 + 73779183 73779327 L1PA3long 6157 - 0 144 147307 144 chain 44669 chr2 243199373 + 73787989 73788626 LTR76 689 - 13 682 63412 23 17 16 30 4 5 52 2 1 156 0 1 5 0 6 177 1 0 47 8 28 80 5 4 23 0 8 7 chain 145889 chr2 243199373 + 73812129 73814856 L1PB2 3958 - 120 2179 25191 63 1 0 22 2 0 72 1 0 64 1 0 63 3 0 7 3 2 68 689 38 71 8 5 56 2 0 27 1 10 26 0 20 14 1 0 152 7 6 128 1 0 123 6 5 249 8 7 48 38 11 339 13 12 26 0 1 324 chain 38847 chr2 243199373 + 73814858 73815344 L1PB2 3958 + 1282 1770 70953 293 2 0 110 0 4 81 chain 2707 chr2 243199373 + 73824280 73824315 L1MB8 1703 - 1648 1682 230141 8 1 0 26 chain 19727 chr2 243199373 + 73842835 73843201 THE1D 372 + 0 357 128023 52 9 0 24 6 8 49 1 5 25 23 24 6 1 0 16 35 29 119 chain 16270 chr2 243199373 + 73849287 73849541 THE1B 368 + 0 259 137549 107 9 10 52 1 0 21 0 2 7 0 1 13 1 5 12 1 0 12 4 3 14 chain 260448 chr2 243199373 + 73872372 73875468 L1P1 4361 - 43 4357 15674 13 1 0 54 1 0 10 11 1216 73 0 9 82 0 3 340 1 0 294 4 6 422 0 2 1790 chain 32669 chr2 243199373 + 73884046 73884400 L1PA2 6032 + 5675 6029 79732 354 chain 515578 chr2 243199373 + 73891627 73897757 L1PA5 6144 - 3 6144 5611 6 4 0 227 4 8 584 3 4 22 1 0 518 1 0 685 0 2 2671 1 6 239 24 15 412 23 22 170 1 2 57 9 8 4 0 1 329 0 14 135 chain 14779 chr2 243199373 + 73909558 73909792 THE1B 368 + 0 242 142006 123 9 12 34 1 0 29 0 3 5 9 13 11 1 0 12 chain 8175 chr2 243199373 + 73909818 73909915 THE1B 368 + 25 122 170098 97 chain 3699 chr2 243199373 + 73909916 73909985 THE1B 368 + 126 194 211951 43 2 0 5 3 5 5 1 0 10 chain 4014 chr2 243199373 + 73914353 73914400 5S 121 - 74 121 207171 47 chain 3775 chr2 243199373 + 73928683 73928726 MIRb 242 + 67 110 210734 43 chain 5333 chr2 243199373 + 73932664 73932883 MER4D 903 - 84 316 191701 16 142 155 61 chain 3775 chr2 243199373 + 73945083 73945126 MIRb 242 + 67 110 210733 43 chain 3049 chr2 243199373 + 73948485 73948520 MER67C 710 + 26 61 224018 35 chain 556415 chr2 243199373 + 73948529 73954658 L1PA3long 6157 + 6 6157 683 689 5 0 55 3 0 886 0 1 870 0 12 1837 1 9 274 1 2 445 0 1 223 0 4 72 0 2 764 0 1 4 chain 12833 chr2 243199373 + 73962475 73962624 L1PA5 6144 + 5995 6144 148915 149 chain 30151 chr2 243199373 + 73972857 73973204 L1PA5 6144 + 5728 6075 84328 347 chain 79310 chr2 243199373 + 73980877 73981885 LTR13 1007 + 1 1007 43906 72 2 0 175 5 1 132 4 5 148 2 0 94 2 1 71 0 3 205 0 5 48 0 2 6 2 0 6 3 1 31 chain 6241 chr2 243199373 + 74000397 74000470 L1PA4 6152 - 0 78 183239 6 0 5 67 chain 10490 chr2 243199373 + 74004908 74005340 MER20B 722 + 201 696 158290 4 1 0 41 10 9 24 176 240 44 10 12 18 46 46 31 1 0 26 chain 12135 chr2 243199373 + 74068647 74068816 MER30B 195 + 0 195 151676 61 2 28 7 2 0 12 0 2 85 chain 5529 chr2 243199373 + 74075638 74075807 MSTD 398 - 0 173 189753 37 87 92 33 1 0 11 chain 22723 chr2 243199373 + 74094395 74094675 AluSp 311 + 1 288 116966 35 0 5 222 0 2 23 chain 10589 chr2 243199373 + 74096746 74096862 L1PA4 6152 + 6035 6151 157877 116 chain 57423 chr2 243199373 + 74104965 74105721 L1PA8 5853 - 0 748 54277 9 2 0 82 6 5 6 0 1 9 2 1 40 7 0 7 0 6 7 2 1 71 2 0 44 1 0 459 chain 5390 chr2 243199373 + 74111089 74111147 LTR12F 595 - 123 181 191089 58 chain 9223 chr2 243199373 + 74128046 74128226 MLT1B 390 - 213 380 164438 25 14 0 13 20 19 58 1 2 25 4 5 20 chain 5315 chr2 243199373 + 74137366 74137436 Tigger3b 1229 - 461 530 191876 39 2 1 29 chain 15436 chr2 243199373 + 74186153 74186514 THE1D 372 - 0 372 140090 32 1 0 98 0 7 6 102 106 17 36 37 69 chain 23615 chr2 243199373 + 74240669 74240947 AluY 311 + 15 291 112494 111 2 0 165 chain 25842 chr2 243199373 + 74252078 74252368 AluY 311 + 10 300 100686 290 chain 148998 chr2 243199373 + 74287661 74289390 SVA_D 2077 - 9 1868 24752 329 0 10 291 1 0 37 17 144 219 0 2 88 45 5 25 2 0 10 3 0 193 0 37 469 chain 2831 chr2 243199373 + 74288643 74288688 SVA_D 2077 - 775 820 121359 45 chain 19915 chr2 243199373 + 74297288 74297640 THE1B 368 - 0 368 127416 56 7 6 56 60 73 60 11 12 42 0 3 60 chain 3874 chr2 243199373 + 74299655 74299704 L1MB5 1630 - 280 335 209243 43 0 6 6 chain 108222 chr2 243199373 + 74350698 74352067 SVA_B 1603 + 335 1602 34640 130 3 1 450 8 4 35 95 0 8 4 0 12 3 1 14 1 0 40 3 0 138 0 6 28 0 3 397 chain 1247 chr2 243199373 + 74351335 74351385 SVA_B 1603 + 838 884 201452 13 4 1 12 1 0 20 chain 13697 chr2 243199373 + 74363497 74363701 MER30 238 + 0 238 145609 24 5 23 61 4 0 8 2 22 100 chain 24768 chr2 243199373 + 74388488 74388789 AluY 311 + 0 296 106066 131 0 2 20 0 1 39 8 0 103 chain 2902 chr2 243199373 + 74397103 74397159 Charlie1b 519 + 463 519 227027 12 1 0 10 6 7 27 chain 28142 chr2 243199373 + 74400796 74401101 AluYg6 310 + 1 306 92493 305 chain 21094 chr2 243199373 + 74420105 74420419 MER4A 717 - 380 690 123567 64 0 5 7 0 7 114 29 12 83 4 5 13 chain 29746 chr2 243199373 + 74511285 74511606 AluYb8 318 - 1 318 85670 185 4 0 132 chain 28349 chr2 243199373 + 74530978 74531275 AluYa5 310 - 13 310 91772 297 chain 17683 chr2 243199373 + 74533215 74533680 LTR19A 502 + 0 502 133740 24 3 0 10 5 4 101 141 0 14 35 217 60 7 5 49 2 0 5 0 4 9 chain 27320 chr2 243199373 + 74545153 74545529 L1PB4 2604 + 1703 2080 95208 108 22 22 146 0 1 100 chain 25273 chr2 243199373 + 74583874 74584169 AluSc 308 - 13 308 103356 89 2 1 86 0 1 118 chain 28205 chr2 243199373 + 74609917 74610221 AluYb8 318 + 0 301 92288 126 3 0 175 chain 7505 chr2 243199373 + 74621075 74621644 MER2 342 + 96 319 174127 55 3 14 23 449 92 39 chain 4428 chr2 243199373 + 74623740 74623794 MER3 215 - 105 159 201604 54 chain 24619 chr2 243199373 + 74744472 74744769 AluSc8 310 + 0 304 106894 43 0 3 85 0 4 169 chain 26331 chr2 243199373 + 74773836 74774140 AluSp 311 - 5 311 98688 251 0 2 53 chain 14751 chr2 243199373 + 74805393 74805581 L1PA6 6164 - 6 194 142096 141 2 1 5 0 1 40 chain 7510 chr2 243199373 + 74832417 74832524 MER45C 884 - 1 105 174111 37 2 0 6 1 0 61 chain 8629 chr2 243199373 + 74837447 74837571 L1MA6 2487 - 747 870 167586 94 0 1 7 5 3 18 chain 18365 chr2 243199373 + 74838752 74838993 AluSp 311 + 75 294 131891 211 22 0 8 chain 24915 chr2 243199373 + 74848126 74848433 AluY 311 + 0 303 105242 29 0 5 92 5 0 164 4 0 13 chain 32719 chr2 243199373 + 74872097 74872509 LTR12C 1709 + 1295 1709 79654 246 1 0 78 7 6 13 0 4 67 chain 22065 chr2 243199373 + 74872552 74872886 MER66B 489 + 0 333 119945 150 1 42 15 41 0 81 1 0 45 chain 28883 chr2 243199373 + 74880310 74880618 AluYg6 310 + 0 308 89528 308 chain 4517 chr2 243199373 + 74884158 74884298 Tigger4a 237 - 97 237 200600 16 2 9 12 62 55 48 chain 72686 chr2 243199373 + 74912915 74914122 L1PA6 6164 + 5229 6162 47180 86 1 5 219 318 0 292 0 1 224 2 0 32 1 44 22 2 0 8 chain 8117 chr2 243199373 + 74923697 74923838 L1PB1 5432 + 5297 5427 170395 22 2 1 7 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 43656 chr2 243199373 + 74947081 74947627 LTR5A 1029 + 0 551 64618 76 0 6 68 13 12 389 chain 40648 chr2 243199373 + 74985376 74985869 L1PA5 6144 - 0 495 68371 38 7 8 102 3 4 343 chain 2996 chr2 243199373 + 74992360 74992398 MER102c 337 - 185 223 225114 38 chain 25173 chr2 243199373 + 75001787 75002141 L1PA8 5853 - 0 352 103893 40 0 4 48 2 1 12 9 10 50 1 0 9 1 0 70 2 0 45 1 0 49 1 0 14 chain 18640 chr2 243199373 + 75018265 75018505 MER75B 242 - 0 242 131110 24 5 6 204 0 1 7 chain 14183 chr2 243199373 + 75019106 75019302 LTR7B 505 - 237 505 143943 17 16 78 58 0 10 105 chain 25571 chr2 243199373 + 75020975 75021750 L1PA3long 6157 - 10 785 28359 775 chain 168539 chr2 243199373 + 75022243 75024207 SVA_D 2077 - 17 2077 22218 321 0 10 284 0 1 7 0 49 158 100 0 133 1 0 4 1 0 39 1 138 707 1 0 171 0 2 36 chain 6759 chr2 243199373 + 75023013 75023113 SVA_D 2077 - 974 1074 90491 1 1 0 9 2 0 56 0 3 31 chain 21974 chr2 243199373 + 75024213 75024879 L1PA3long 6157 - 785 1451 28359 666 chain 100359 chr2 243199373 + 75028998 75030443 L1PB3 3668 + 2131 3565 36671 208 1 3 32 8 5 94 3 0 57 0 1 87 0 1 46 5 4 24 0 5 277 14 12 11 2 0 80 1 2 68 6 14 77 0 4 48 1 0 46 0 1 4 1 0 47 3 2 83 24 8 18 1 0 3 1 0 25 10 8 29 chain 3822 chr2 243199373 + 75030770 75030993 L1ME1 1623 + 1046 1276 210053 33 151 159 10 1 0 28 chain 25170 chr2 243199373 + 75036606 75036905 AluSp 311 - 11 311 103904 202 0 1 97 chain 3193 chr2 243199373 + 75036937 75036971 MLT2D 439 + 110 144 221058 34 chain 8808 chr2 243199373 + 75045745 75045888 MER30 238 - 0 150 166609 48 3 0 49 24 34 19 chain 11473 chr2 243199373 + 75058077 75058251 MER66B 489 + 162 337 154410 21 10 14 54 1 0 37 1 0 27 1 0 22 chain 10634 chr2 243199373 + 75094293 75094530 L1PB1 5432 + 5111 5319 157676 6 5 0 21 1 0 4 5 4 11 6 2 8 2 0 53 2 1 16 2 1 43 1 0 15 13 1 18 1 0 4 chain 3971 chr2 243199373 + 75098229 75098353 MER5A 189 - 31 144 207816 14 13 10 33 42 34 22 chain 11494 chr2 243199373 + 75113013 75113154 MER41A 554 - 113 254 154318 141 chain 35023 chr2 243199373 + 75127194 75127639 MER41B 635 - 186 635 76157 82 0 1 17 0 1 49 2 3 167 0 1 128 chain 32292 chr2 243199373 + 75129063 75129517 LTR7B 505 - 7 505 80377 44 14 13 79 1 0 82 0 2 24 1 0 4 2 1 8 0 26 18 6 13 69 0 10 8 0 3 94 chain 27562 chr2 243199373 + 75132525 75132875 THE1A 353 - 0 353 94463 57 1 0 211 4 5 12 0 3 65 chain 124031 chr2 243199373 + 75132881 75134420 THE1A-int 1579 - 6 1570 29692 80 0 16 847 0 3 46 1 0 79 2 0 60 0 2 44 10 15 256 0 1 6 1 0 101 0 2 6 chain 14884 chr2 243199373 + 75134430 75134933 THE1A 353 - 43 243 141676 98 0 6 15 312 3 78 chain 9166 chr2 243199373 + 75134936 75135044 THE1A 353 - 245 353 164731 108 chain 10418 chr2 243199373 + 75164947 75165101 L1PA8 5853 - 0 151 158605 92 2 1 18 10 8 32 chain 44509 chr2 243199373 + 75181824 75182368 MER41A 554 + 13 554 63571 181 3 0 360 chain 13655 chr2 243199373 + 75187897 75188184 Tigger3a 397 + 35 332 145762 57 40 43 38 9 15 52 33 34 58 chain 326906 chr2 243199373 + 75197235 75200819 L1PA3long 6157 - 1 3594 12307 988 0 1 88 1 9 2507 chain 232934 chr2 243199373 + 75214010 75216715 L1PA6 6164 + 3411 6162 17145 45 0 19 153 0 2 235 0 2 98 0 11 204 1 2 289 0 8 373 0 2 194 1 0 854 1 2 92 0 1 165 chain 22597 chr2 243199373 + 75290016 75290355 THE1B 368 - 0 368 117598 23 0 3 99 39 51 24 1 0 109 0 15 44 chain 287612 chr2 243199373 + 75309054 75312270 L1PA5 6144 - 5 3217 14182 407 4 0 2805 chain 6502 chr2 243199373 + 75347210 75347304 MER41A 554 - 87 169 181225 70 12 0 12 chain 3686 chr2 243199373 + 75370809 75370871 MADE1 96 - 0 96 212145 16 11 45 35 chain 182681 chr2 243199373 + 75374549 75377254 L1PA8 5853 - 0 2384 20719 43 9 18 31 3 2 15 64 69 66 2 0 45 1 0 33 310 0 68 0 1 333 1 0 23 0 3 6 3 0 88 2 0 603 42 23 193 0 2 535 1 0 59 1 2 35 2 0 88 chain 3518 chr2 243199373 + 75376298 75376335 L1PA8 5853 - 1405 1442 207481 37 chain 22267 chr2 243199373 + 75377445 75377786 THE1A 353 + 6 343 119045 53 9 11 40 1 0 102 28 24 85 2 1 21 chain 127242 chr2 243199373 + 75377797 75379349 THE1A-int 1579 + 1 1558 28756 97 1 0 71 2 1 5 0 1 932 5 4 171 2 3 28 0 6 238 chain 24902 chr2 243199373 + 75379370 75379723 THE1A 353 + 0 353 105331 110 1 0 123 29 30 90 chain 115993 chr2 243199373 + 75397587 75399117 THE1B-int 1605 + 0 1575 32460 113 0 3 56 2 0 258 38 21 47 10 30 227 0 9 194 1 2 30 4 5 14 13 14 68 0 3 48 0 4 121 0 22 286 chain 90156 chr2 243199373 + 75434246 75435904 L1PB1 5432 - 216 1605 39590 49 44 38 15 5 0 9 1 2 57 27 58 102 0 9 65 305 0 6 0 9 92 0 2 53 27 22 162 1 2 76 4 3 277 6 5 32 1 0 203 0 2 39 chain 39187 chr2 243199373 + 75440856 75441304 LTR7 482 - 0 482 70476 187 0 31 120 0 3 141 chain 296038 chr2 243199373 + 75442590 75446192 HERVH-int 3825 - 2 3814 13645 493 0 210 672 0 1 324 16 0 407 4 31 122 0 3 337 15 0 307 5 8 127 0 3 12 0 2 8 1 2 54 3 2 42 1 38 14 28 0 24 1 0 10 1 0 28 12 7 263 10 0 261 chain 39382 chr2 243199373 + 75446212 75446663 LTR7 482 - 0 482 70194 187 1 32 263 chain 3416 chr2 243199373 + 75452476 75452520 MER5A 189 + 64 108 216826 44 chain 2593 chr2 243199373 + 75453959 75454023 MLT1I 406 - 23 89 231772 23 7 8 11 7 8 16 chain 29322 chr2 243199373 + 75463910 75464221 AluYa5 310 - 0 310 87425 192 1 0 118 chain 2501 chr2 243199373 + 75485517 75485543 LTR9B 643 + 304 330 233126 26 chain 44025 chr2 243199373 + 75516230 75516782 MER41A 554 + 0 554 64173 314 1 0 11 0 1 73 5 7 148 chain 64199 chr2 243199373 + 75555552 75556261 L1PA3long 6157 - 3178 3891 50883 6 0 4 703 chain 288929 chr2 243199373 + 75556261 75559448 L1PA3long 6157 + 2968 6156 14092 2814 0 1 373 chain 3702 chr2 243199373 + 75582694 75582733 MLT2B3 573 - 3 42 211917 39 chain 3869 chr2 243199373 + 75587711 75587758 MADE1 96 - 3 50 209320 47 chain 505608 chr2 243199373 + 75596022 75602161 L1PA6 6164 - 4 6164 6488 587 0 1 222 0 1 195 0 1 150 24 26 371 0 1 909 1 0 452 1 5 49 0 1 864 0 1 601 0 1 255 0 4 215 2 0 177 1 0 263 1 18 80 2 1 142 1 0 117 16 8 244 5 6 192 chain 9868 chr2 243199373 + 75612921 75613070 PABL_A-int 1935 - 1692 1836 161247 104 7 4 29 2 0 7 chain 137491 chr2 243199373 + 75613388 75615246 L1PA8 5853 - 1 2084 26562 30 0 9 53 1 0 19 2 1 19 4 1 40 1 0 14 0 3 51 9 7 41 1 0 48 3 4 300 6 8 186 4 3 86 1 2 592 40 259 307 chain 309768 chr2 243199373 + 75619872 75623857 HERVL-int 5654 - 0 5654 13011 168 0 3 55 1 0 50 1 0 230 6 7 156 1 2 35 4 0 45 0 3 204 17 18 542 0 1 215 1 5 107 1 0 922 5 1711 282 1 0 4 7 8 358 1 0 29 7 0 50 0 2 136 2 6 7 4 0 121 0 2 5 65 25 140 chain 150168 chr2 243199373 + 75624299 75626832 L1PB2 3958 + 1703 3815 24590 141 1 2 15 5 7 278 0 1 143 37 0 157 3 4 11 0 1 21 0 1 12 8 5 124 9 10 36 0 5 70 1 3 30 0 2 7 16 0 133 6 5 99 0 2 154 375 13 4 0 1 107 2 0 56 1 0 11 6 0 65 2 0 12 4 0 94 1 0 72 1 0 17 1 0 48 1 0 11 0 3 6 7 4 47 2 0 21 2 1 40 chain 27682 chr2 243199373 + 75657821 75658213 LTR7 482 + 0 476 94106 86 0 50 88 0 1 16 23 54 12 0 1 22 3 2 120 0 2 22 chain 179123 chr2 243199373 + 75660862 75663095 L1PA8 5853 + 3603 5847 21063 57 8 7 325 0 2 101 0 1 238 1 0 162 4 0 423 0 1 82 2 0 7 2 0 75 0 2 7 3 5 38 0 1 113 0 18 296 1 0 44 2 0 70 2 1 61 2 1 19 1 0 87 chain 28023 chr2 243199373 + 75664335 75664651 L1PA5 6144 - 20 335 92920 231 1 0 84 chain 20832 chr2 243199373 + 75675269 75675553 AluSp 311 + 8 294 124505 15 0 1 67 0 3 44 7 4 8 0 3 125 6 4 12 chain 27184 chr2 243199373 + 75676607 75676913 AluYk4 311 + 0 306 95649 306 chain 16360 chr2 243199373 + 75678397 75678683 THE1D 372 - 0 287 137312 148 65 67 55 1 0 17 chain 38060 chr2 243199373 + 75686590 75687052 LTR2 463 + 0 463 72046 359 15 16 88 chain 3367 chr2 243199373 + 75731762 75731800 L1PA8 5853 + 5526 5564 217718 38 chain 9152 chr2 243199373 + 75731801 75731911 L1PA8 5853 + 5564 5677 164800 46 2 0 56 0 5 6 chain 5779 chr2 243199373 + 75731911 75731992 L1PA8 5853 + 5679 5758 187360 9 1 0 52 2 1 17 chain 7860 chr2 243199373 + 75731996 75732088 L1PA8 5853 + 5761 5853 171937 92 chain 79520 chr2 243199373 + 75734989 75736003 MER11C 1089 + 0 1063 43816 235 0 2 9 0 9 62 0 4 65 1 0 146 31 63 54 6 5 18 1 0 18 0 4 5 1 0 38 0 1 127 0 1 197 chain 28165 chr2 243199373 + 75769051 75769417 THE1B 368 + 0 368 92413 13 2 0 27 0 5 127 2 1 195 chain 39861 chr2 243199373 + 75817755 75818222 L1PA7 6471 - 15 488 69518 157 0 6 310 chain 224141 chr2 243199373 + 75908262 75911691 L1P2 5180 + 2 3080 17644 148 1 0 53 50 49 66 29 0 5 154 0 31 22 0 3 5 0 89 19 0 59 12 2 8 1 0 27 98 23 168 34 13 30 7 22 246 0 1 4 1 0 22 32 35 341 0 2 878 35 6 145 6 1 464 0 1 136 chain 49068 chr2 243199373 + 75911691 75912335 L1PA7 6471 + 5819 6461 59699 20 4 5 139 8 7 174 6 0 111 0 2 28 3 4 77 0 1 74 chain 105186 chr2 243199373 + 75938740 75940004 LTR12C 1709 + 222 1709 35453 43 1 2 452 0 118 238 0 2 34 1 0 5 3 1 107 0 4 168 0 102 44 1 0 167 chain 7035 chr2 243199373 + 75944991 75945084 L1MB1 2102 - 113 204 177212 47 2 0 44 chain 112407 chr2 243199373 + 75951685 75952931 SVA_D 2077 + 0 2077 33558 370 0 15 325 0 818 537 2 0 12 chain 23112 chr2 243199373 + 75953401 75953801 MSTA 426 - 0 426 115079 15 10 11 29 0 5 92 37 36 80 29 50 108 chain 117508 chr2 243199373 + 75960313 75961768 THE1A-int 1579 - 9 1579 31963 213 0 1 302 4 5 112 5 6 36 1 82 133 0 31 649 chain 10705 chr2 243199373 + 75961779 75961906 THE1A 353 - 11 138 157392 127 chain 30832 chr2 243199373 + 75967585 75968099 THE1B-int 1605 - 0 398 82807 311 120 2 69 0 2 14 chain 63685 chr2 243199373 + 75988183 75989019 L1PA8 5853 - 0 835 51148 15 0 1 77 1 0 19 2 1 44 19 17 71 2 0 44 1 0 325 0 2 42 2 1 5 0 1 102 0 2 42 0 1 23 chain 48168 chr2 243199373 + 76005077 76005837 L1PA11 4918 + 3738 4508 60346 50 22 0 10 1 0 4 0 23 346 11 33 119 3 0 64 23 19 52 35 30 20 chain 27067 chr2 243199373 + 76009443 76009815 THE1C 375 - 2 375 96048 24 1 0 172 0 1 23 16 0 8 3 20 125 chain 3077 chr2 243199373 + 76018561 76018599 MER5B 177 + 74 112 223373 38 chain 58434 chr2 243199373 + 76033130 76033803 L1PA7 6471 + 5790 6465 53725 66 0 3 278 1 0 328 chain 5999 chr2 243199373 + 76044692 76044782 THE1A 353 - 263 353 185253 35 1 4 4 1 0 34 3 1 12 chain 124332 chr2 243199373 + 76044787 76046347 THE1A-int 1579 - 5 1579 29588 4 0 1 300 0 9 39 0 2 228 5 6 343 0 1 7 2 1 175 0 1 457 chain 3847 chr2 243199373 + 76058313 76058371 MIR 256 + 127 179 209677 16 6 0 36 chain 510563 chr2 243199373 + 76061063 76067288 L1PA7 6471 + 245 6467 6115 160 1 2 353 0 1 387 0 2 85 0 4 69 0 1 163 0 13 590 19 17 544 7 8 461 0 2 288 0 5 66 0 1 4 1 0 19 1 0 7 1 0 52 0 4 178 1 0 101 1 0 647 0 3 152 0 1 665 33 5 294 0 1 20 1 0 431 1 0 272 0 1 137 7 0 6 chain 63685 chr2 243199373 + 76098815 76099587 LTR17 781 + 0 781 51149 119 0 9 199 0 1 296 2 0 149 0 1 7 chain 365947 chr2 243199373 + 76101231 76105543 HERV17-int 4347 + 12 4347 11208 15 1 0 53 1 0 32 2 0 26 2 1 158 6 0 71 0 9 220 1 0 78 1 2 81 0 3 384 0 3 138 0 2 130 1 0 136 0 2 262 1 0 1103 0 1 273 1 12 413 21 16 90 0 4 227 0 5 207 0 1 177 chain 59248 chr2 243199373 + 76105857 76106624 LTR17 781 + 0 781 53253 119 0 9 54 0 3 61 0 11 42 10 0 28 0 1 387 22 0 17 8 30 19 chain 17811 chr2 243199373 + 76109992 76110275 MLT1-int 490 + 85 369 133374 81 1 0 47 38 40 116 chain 27821 chr2 243199373 + 76127727 76128026 AluYa5 310 + 1 298 93627 131 2 0 166 chain 27822 chr2 243199373 + 76137000 76137295 AluYg6 310 + 0 295 93624 295 chain 16020 chr2 243199373 + 76156602 76156771 AluYa5 310 + 140 309 138308 169 chain 11993 chr2 243199373 + 76157824 76157968 L1PA6 6164 - 4 148 152229 144 chain 21766 chr2 243199373 + 76165162 76165447 L1P4 1494 - 104 397 121149 40 1 9 244 chain 12377 chr2 243199373 + 76170145 76170420 L1PB1 5432 - 37 284 150724 4 1 0 21 1 0 24 2 0 15 43 29 6 2 0 16 1 0 44 6 5 64 2 0 8 5 1 10 chain 67602 chr2 243199373 + 76203026 76203883 L1PB1 5432 - 1012 1871 49400 675 2 0 22 0 4 158 chain 58035 chr2 243199373 + 76203904 76204911 L1PB1 5432 + 4447 5412 53957 66 0 5 103 3 0 91 10 11 81 21 31 141 2 1 10 9 0 7 4 3 82 0 4 20 1 2 8 4 1 11 10 9 12 1 0 12 26 20 42 2 1 60 1 0 14 1 0 7 26 12 13 2 0 5 1 0 14 2 0 24 1 0 21 14 0 13 1 0 8 chain 69911 chr2 243199373 + 76205037 76205814 L1PA4 6152 - 1 778 48430 777 chain 34924 chr2 243199373 + 76206275 76206671 L1PA7 6471 + 6067 6463 76303 396 chain 10072 chr2 243199373 + 76214454 76214728 MLT1A0 366 - 12 366 160213 57 34 116 60 70 68 22 1 0 6 10 11 14 chain 24374 chr2 243199373 + 76215805 76218040 THE1B 368 - 1 368 108232 74 1 0 86 1884 0 32 1 3 105 8 23 44 chain 4998 chr2 243199373 + 76215983 76216161 THE1B 368 - 176 368 195160 10 79 78 34 11 26 44 chain 7429 chr2 243199373 + 76217708 76217823 THE1B 368 - 10 124 174587 55 10 9 50 chain 10153 chr2 243199373 + 76220351 76220496 L1PA8 5853 + 5710 5853 159834 29 3 2 19 1 0 93 chain 91828 chr2 243199373 + 76222939 76224038 L1PA7 6471 - 1 1103 39016 9 2 0 145 7 8 225 0 1 369 0 1 96 0 2 246 chain 187153 chr2 243199373 + 76229937 76232007 L1PA3long 6157 + 4081 6157 20324 1371 0 1 231 0 1 217 0 4 251 chain 41904 chr2 243199373 + 76238414 76238977 PRIMA4_LTR 623 - 0 623 66752 16 1 6 19 0 3 165 0 4 27 7 1 15 0 58 113 12 8 175 0 1 5 1 0 7 chain 66409 chr2 243199373 + 76239423 76240167 L1PA4 6152 - 9 753 49912 744 chain 27244 chr2 243199373 + 76271739 76272118 LTR1 825 - 0 379 95449 95 14 15 98 0 1 76 8 6 88 chain 3536 chr2 243199373 + 76273497 76273553 L1M1 2793 + 2630 2685 214764 38 6 5 12 chain 5844 chr2 243199373 + 76278888 76278973 MLT1A1 405 - 0 84 186739 11 6 5 68 chain 11354 chr2 243199373 + 76280130 76280253 L1PA4 6152 + 6018 6141 154883 123 chain 553331 chr2 243199373 + 76317774 76323910 L1PA3long 6157 - 0 6157 1033 1688 0 1 1771 0 1 2369 1 10 71 0 10 236 chain 73759 chr2 243199373 + 76354046 76354898 L1PA5 6144 - 0 845 46644 150 7 0 695 chain 85873 chr2 243199373 + 76354898 76355848 L1PA5 6144 + 4345 5294 41204 283 1 0 666 chain 115312 chr2 243199373 + 76359624 76360896 L1PA3long 6157 - 0 1272 32676 1272 chain 439906 chr2 243199373 + 76361707 76367309 L1PA7 6471 - 2 6471 9055 11 3 0 87 5 6 44 0 6 6 6 0 153 1 0 4 14 16 153 7 8 354 1 0 18 0 4 123 16 17 467 7 6 31 1 0 286 0 4 356 9 8 483 6 801 385 1 0 110 0 2 76 4 80 700 7 8 172 0 1 57 0 1 127 15 13 5 0 3 52 6 2 543 4 5 262 1 0 6 21 9 135 29 14 9 0 15 11 0 1 39 5 6 168 chain 243378 chr2 243199373 + 76398712 76401848 L1PA8A 6298 - 8 3129 16596 271 1 2 11 1 0 125 2 1 164 0 1 135 0 1 94 13 11 131 0 5 112 2 0 65 7 8 290 7 2 30 6 7 137 0 4 327 0 1 105 3 10 356 1 7 11 7 1 120 42 0 15 4 12 264 0 7 47 0 1 230 chain 85679 chr2 243199373 + 76404283 76405347 MER11C 1089 - 14 1089 41278 291 7 15 170 10 11 321 0 3 75 1 0 189 chain 106311 chr2 243199373 + 76434853 76436568 L1PA8 5853 - 6 1403 35181 86 2 1 19 2 1 48 16 14 70 2 0 46 1 0 62 0 12 334 16 0 63 1 2 80 2 0 18 1 5 76 0 1 190 314 0 121 1 2 8 0 1 99 5 6 32 chain 74502 chr2 243199373 + 76440387 76441551 L1PB1 5432 + 4277 5427 46274 23 0 1 68 0 10 250 2 0 178 1 3 7 3 0 82 0 2 237 1 0 6 1 0 14 5 1 9 10 8 43 1 0 18 4 3 18 18 25 13 50 36 14 2 0 24 1 0 22 1 0 12 1 0 18 2 0 5 chain 27070 chr2 243199373 + 76446756 76447061 AluYk4 311 - 5 311 96038 114 0 1 191 chain 80951 chr2 243199373 + 76447317 76448211 L1PA3long 6157 - 5 899 43214 894 chain 128385 chr2 243199373 + 76451589 76453036 L1PA4 6152 - 9 1456 28479 258 0 1 153 0 1 73 2 0 961 chain 3944 chr2 243199373 + 76478222 76478265 MLT2B2 565 + 446 489 208218 43 chain 24755 chr2 243199373 + 76493178 76493554 THE1C 375 - 0 375 106145 177 23 20 85 13 0 10 6 21 62 chain 147726 chr2 243199373 + 76526528 76528102 L1HS 6032 - 2 1576 24919 1574 chain 74635 chr2 243199373 + 76528102 76528894 L1HS 6032 + 3687 4479 46052 792 chain 6839 chr2 243199373 + 76533795 76534048 L1MCa 1829 - 17 266 178661 15 6 1 25 101 107 29 3 0 12 2 0 30 0 2 6 8 6 16 chain 28736 chr2 243199373 + 76542456 76542835 THE1C 375 - 0 375 90182 139 1 0 116 5 2 118 chain 36136 chr2 243199373 + 76553364 76553855 MLT2A1 477 + 0 477 74724 140 1 2 27 0 4 21 1 0 10 1 0 181 1 0 11 6 0 7 16 9 5 2 0 41 1 0 19 chain 17083 chr2 243199373 + 76560639 76561025 L1PB1 5432 - 32 381 135372 9 1 0 21 1 0 24 2 0 12 10 7 14 45 32 44 1 0 16 2 1 52 7 0 10 16 11 12 1 0 17 21 19 48 chain 548610 chr2 243199373 + 76572288 76578426 L1PA3long 6157 - 8 6131 1623 141 1 0 571 12 0 956 1 0 1783 0 1 380 2 0 1277 1 0 891 0 1 122 chain 5198 chr2 243199373 + 76581790 76581853 LTR17 781 - 718 781 193042 63 chain 40674 chr2 243199373 + 76590832 76591368 MLT2A2 560 + 0 560 68333 140 17 32 31 0 1 89 0 4 251 0 4 8 chain 27443 chr2 243199373 + 76601607 76601952 THE1A 353 - 0 353 94837 119 0 1 115 5 12 106 chain 26811 chr2 243199373 + 76603594 76603904 AluSp 311 - 3 311 96936 26 2 0 282 chain 12007 chr2 243199373 + 76615707 76615894 MER30 238 - 0 201 152170 48 3 0 59 4 25 12 8 4 53 chain 38067 chr2 243199373 + 76636595 76637254 LTR12F 595 - 0 595 72036 20 11 7 85 1 0 118 0 1 113 88 0 9 2 1 26 4 68 43 35 0 104 chain 1338 chr2 243199373 + 76636951 76637031 LTR12F 595 - 354 474 218445 16 24 0 10 5 69 25 chain 11372 chr2 243199373 + 76637254 76637388 THE1B-int 1605 + 1456 1590 154811 134 chain 18182 chr2 243199373 + 76642612 76642869 MER50B 698 + 394 654 132380 80 15 14 47 1 0 39 0 5 75 chain 208944 chr2 243199373 + 76667827 76670149 L1PA4 6152 - 9 2333 18570 1145 0 1 1158 0 1 19 chain 22281 chr2 243199373 + 76672295 76672536 7SK 245 - 4 245 118990 241 chain 3213 chr2 243199373 + 76693481 76693521 MER5B 177 + 8 48 220692 40 chain 7999 chr2 243199373 + 76704063 76704172 MER51-int 1546 + 75 183 171075 73 2 1 34 chain 94025 chr2 243199373 + 76707526 76708542 L1PA3long 6157 - 0 1016 38343 1016 chain 3527 chr2 243199373 + 76727955 76728048 LTR40a 516 - 410 516 214930 21 39 52 33 chain 37122 chr2 243199373 + 76789720 76790142 L1PA3long 6157 - 1 417 73354 146 6 0 270 chain 40826 chr2 243199373 + 76800750 76801201 LTR7 482 - 0 482 68136 191 0 31 260 chain 317746 chr2 243199373 + 76802458 76806377 HERVH-int 3825 - 0 3825 12684 75 0 1 149 0 2 1149 0 1 321 19 0 8 1 20 383 4 31 226 0 2 234 15 0 444 1 0 49 2 1 15 106 0 15 2 1 14 10 30 16 16 0 7 3 0 13 1 14 24 1 0 10 1 0 38 5 0 43 2 0 107 0 2 108 10 0 272 chain 38357 chr2 243199373 + 76806379 76806830 LTR7 482 - 0 482 71635 187 1 32 263 chain 174985 chr2 243199373 + 76817353 76819291 L1PA3long 6157 - 8 1946 21463 727 0 1 786 1 0 424 chain 51477 chr2 243199373 + 76819292 76819862 L1PA3long 6157 + 3630 4200 57988 570 chain 31814 chr2 243199373 + 76821919 76822399 MLT2A2 560 + 0 510 81141 115 10 14 28 2 0 8 17 33 201 28 39 51 0 1 20 chain 140983 chr2 243199373 + 76823745 76825538 HERVL-int 5654 + 1886 4504 25989 216 0 3 53 4 5 69 3 21 12 40 1 30 0 1 276 0 1 604 0 839 152 0 1 334 chain 106511 chr2 243199373 + 76829017 76830395 THE1A-int 1579 - 158 1579 35117 357 15 8 47 0 43 278 0 1 443 1 4 128 8 11 101 chain 48382 chr2 243199373 + 76861616 76862221 PABL_A 660 + 0 660 60194 84 0 9 80 0 39 421 0 7 20 chain 28249 chr2 243199373 + 76874170 76874473 AluYa5 310 - 7 310 92118 303 chain 541229 chr2 243199373 + 76875120 76881146 L1PA3long 6157 - 0 6156 2633 14 3 0 1508 1 0 1991 0 4 496 0 1 1239 0 128 620 4 5 150 chain 29632 chr2 243199373 + 76904161 76904486 L1PA2 6032 + 5706 6031 86120 325 chain 6096 chr2 243199373 + 76925157 76925227 LTR12C 1709 - 500 570 184451 70 chain 537167 chr2 243199373 + 76929219 76935241 L1PA3long 6157 - 0 6156 3290 792 0 10 41 0 4 1138 0 1 3267 0 128 555 10 0 61 6 7 152 chain 549150 chr2 243199373 + 76949962 76956151 L1PA3long 6157 - 0 6151 1561 148 1 0 3300 3 0 838 0 1 385 29 1 75 6 1 226 1 2 674 3 0 500 chain 27734 chr2 243199373 + 76974270 76974649 THE1C 375 - 0 375 93921 26 1 0 152 16 11 5 0 2 179 chain 8634 chr2 243199373 + 76999889 76999997 MER44A 345 + 129 237 167569 108 chain 542020 chr2 243199373 + 77002884 77008884 L1PA2 6032 - 2 6010 2500 4476 0 1 249 0 2 355 0 1 4 1 0 44 1 0 180 4 11 385 6 5 62 5 4 133 0 1 95 chain 444717 chr2 243199373 + 77022930 77028036 L1HS 6032 + 2 5326 8913 115 0 1 31 16 16 86 6 5 57 2 1 393 7 14 128 0 1 4 1 0 44 1 0 44 1 0 4 0 1 53 20 207 76 0 9 1118 0 16 2866 0 1 33 chain 68591 chr2 243199373 + 77028036 77028803 L1PA2 6032 + 5266 6032 48992 278 1 0 488 chain 44925 chr2 243199373 + 77064183 77064692 L1P1 4361 - 891 1404 63143 219 0 4 290 chain 47116 chr2 243199373 + 77064692 77065207 L1PA3long 6157 + 5627 6142 61113 515 chain 61528 chr2 243199373 + 77067891 77068561 L1PA4 6152 + 5481 6151 52102 670 chain 7423 chr2 243199373 + 77069871 77069955 L1PA8 5853 - 6 90 174630 84 chain 15467 chr2 243199373 + 77093834 77094008 L1PA8 5853 - 360 534 139996 174 chain 25187 chr2 243199373 + 77094008 77094359 L1PA8 5853 + 5507 5853 103817 57 1 0 44 2 0 69 10 11 8 1 0 48 2 1 15 1 0 93 chain 501254 chr2 243199373 + 77132009 77137632 L1PA3long 6157 + 0 6157 6770 95 0 526 77 1 8 9 8 0 475 0 3 123 0 1 1323 0 4 299 0 1 1000 0 1 1439 1 0 773 chain 15366 chr2 243199373 + 77143355 77143538 AluY 311 + 127 310 140302 183 chain 10438 chr2 243199373 + 77159970 77160095 L1PA7 6471 - 2 124 158534 6 3 0 116 chain 22533 chr2 243199373 + 77162798 77163096 L1P1 4361 - 47 346 117878 9 1 0 110 0 2 44 0 1 4 2 0 89 0 1 39 chain 50867 chr2 243199373 + 77163101 77163722 L1PA7 6471 + 5846 6470 58391 107 0 1 252 1 2 99 3 4 159 chain 81986 chr2 243199373 + 77168446 77169484 L1PA7 6471 - 7 1049 42766 5 2 0 285 7 8 32 1 2 499 6 10 201 chain 36304 chr2 243199373 + 77178754 77179240 L1PA8 5853 - 0 483 74500 93 1 0 8 0 1 10 2 1 52 1 0 9 2 1 70 2 0 43 2 1 35 5 8 151 chain 23209 chr2 243199373 + 77249141 77249482 THE1A 353 - 13 353 114648 99 13 14 133 1 0 46 6 7 26 2 0 15 chain 116654 chr2 243199373 + 77249488 77251030 THE1A-int 1579 - 5 1579 32243 5 0 1 552 0 1 276 9 0 6 5 14 44 11 12 62 6 7 36 19 15 205 0 6 123 0 26 183 chain 31174 chr2 243199373 + 77256305 77256752 MLT2A2 560 - 0 560 82214 70 0 1 72 0 11 180 31 30 29 0 82 38 1 21 26 chain 13795 chr2 243199373 + 77262195 77262363 L1PA5 6144 - 5 186 145286 141 1 2 8 0 12 18 chain 75102 chr2 243199373 + 77282501 77283321 L1PA3long 6157 + 5332 6152 45967 820 chain 43035 chr2 243199373 + 77295856 77296364 MER9a2 513 + 0 509 65372 424 0 1 84 chain 38168 chr2 243199373 + 77315372 77315800 LTR7 482 + 23 482 71887 240 1 32 187 chain 298050 chr2 243199373 + 77315802 77319541 HERVH-int 3825 + 0 3825 13529 502 61 0 29 4 0 38 1 3 8 1 0 9 69 15 15 1 0 12 3 0 7 21 0 15 21 0 45 0 20 11 2 1 49 1 0 36 0 1 407 15 0 218 0 1 243 4 31 297 1 11 906 4 0 190 8 218 260 0 2 225 chain 32050 chr2 243199373 + 77320792 77321156 LTR7 482 + 0 397 80778 264 0 31 91 0 2 9 chain 28903 chr2 243199373 + 77332455 77332787 L1PA4 6152 + 5815 6143 89442 110 4 0 218 chain 70443 chr2 243199373 + 77341715 77342728 MER11A 1151 - 0 1151 48186 64 1 0 89 8 7 98 1 33 8 5 0 4 0 33 68 0 4 37 3 4 11 19 22 319 35 0 45 0 11 66 1 0 32 2 0 42 1 100 54 chain 29133 chr2 243199373 + 77357950 77358259 AluYa5 310 - 1 310 88393 309 chain 480615 chr2 243199373 + 77363149 77368743 L1PA5 6144 + 0 6130 7710 89 0 525 393 0 1 671 0 1 125 0 1 884 0 3 284 0 1 89 8 7 601 1 0 258 0 1 28 4 0 183 0 4 337 2 1 4 0 1 799 0 4 515 0 1 319 chain 22542 chr2 243199373 + 77372635 77372905 AluY 311 + 23 288 117835 103 5 0 162 chain 12772 chr2 243199373 + 77386502 77386646 L1PA5 6144 + 5988 6132 149166 144 chain 498102 chr2 243199373 + 77389033 77395075 L1PA5 6144 + 0 6132 6950 121 0 14 24 0 52 315 5 4 134 1 2 360 1 0 4 1 3 124 21 12 273 0 1 135 0 1 200 4 21 510 1 0 192 0 1 68 0 1 159 4 0 444 0 1 343 4 5 112 4 5 33 1 3 299 1 0 276 0 3 128 0 1 94 0 2 50 36 36 725 0 4 52 0 1 623 1 2 159 chain 58492 chr2 243199373 + 77408937 77409659 L1PA8A 6298 + 5570 6290 53704 535 3 0 75 5 6 104 chain 20958 chr2 243199373 + 77409692 77409925 L1P1 4361 - 98 344 122480 100 0 13 133 chain 111801 chr2 243199373 + 77409925 77411210 L1PA4 6152 + 4855 6142 33719 443 0 4 516 3 2 314 1 0 8 chain 19517 chr2 243199373 + 77414545 77414760 L1PA4 6152 + 5936 6151 128602 215 chain 498786 chr2 243199373 + 77446895 77452499 L1PA4 6152 + 549 6151 6910 687 0 1 2649 1 0 103 1 0 5 0 1 1301 1 0 292 2 0 309 1 2 252 chain 25250 chr2 243199373 + 77470265 77470565 AluSp 311 + 9 311 103475 82 0 3 17 2 1 199 chain 57819 chr2 243199373 + 77470899 77471522 L1PA2 6032 - 4 627 54077 623 chain 97465 chr2 243199373 + 77518916 77519983 L1PA3long 6157 + 5091 6157 37437 293 1 0 773 chain 23674 chr2 243199373 + 77526973 77527264 AluSc 308 - 5 297 112179 38 6 7 247 chain 5247 chr2 243199373 + 77574740 77574867 MER5C 305 - 72 209 192545 27 50 60 50 chain 29959 chr2 243199373 + 77577166 77577488 AluYb8 318 + 0 318 84942 118 4 0 200 chain 23887 chr2 243199373 + 77613514 77613812 L1PA8 5853 - 267 582 110980 122 6 13 88 0 10 82 chain 18548 chr2 243199373 + 77613812 77614071 L1PA8 5853 + 5592 5847 131361 16 2 0 71 1 0 13 1 0 51 1 0 13 5 4 9 0 1 39 1 0 4 1 3 31 chain 19260 chr2 243199373 + 77643994 77644219 L1PA4 6152 + 5115 5340 129346 225 chain 70504 chr2 243199373 + 77644219 77645039 L1PA4 6152 + 5342 6143 48163 495 21 0 157 0 2 147 chain 8323 chr2 243199373 + 77716042 77716135 L1PA3long 6157 + 6064 6157 169267 93 chain 19003 chr2 243199373 + 77769832 77770131 L1P4 1494 + 1048 1350 130098 123 46 47 119 0 2 11 chain 49095 chr2 243199373 + 77771487 77772328 L1PREC2 3366 + 2232 3040 59672 51 1 0 45 7 6 6 0 1 172 0 1 143 0 8 87 2 0 54 1 0 44 7 3 14 56 42 14 2 0 28 36 20 14 31 29 26 chain 118049 chr2 243199373 + 77784546 77786087 THE1B-int 1605 + 13 1597 31784 329 10 9 81 0 25 305 26 37 341 5 3 171 1 0 5 0 1 75 0 10 86 1 0 97 0 1 8 chain 59407 chr2 243199373 + 77800295 77800953 L1PA4 6152 - 69 727 53171 658 chain 15101 chr2 243199373 + 77818069 77818335 LTR12C 1709 + 932 1203 141027 18 1 0 162 66 72 19 chain 534679 chr2 243199373 + 77819957 77825963 L1PA3long 6157 + 9 6152 3631 143 0 1 147 0 1 20 0 2 99 0 1 353 0 128 146 0 1 1156 0 2 117 1 0 936 2 1 683 0 1 1360 0 1 706 0 1 32 0 3 5 10 7 90 chain 31757 chr2 243199373 + 77849455 77849904 MLT2A1 477 - 0 477 81240 6 0 4 27 43 69 166 0 1 33 3 0 171 chain 25649 chr2 243199373 + 77849930 77850226 HERVL-int 5654 - 26 322 101506 296 chain 63499 chr2 243199373 + 77873297 77873981 L1PA2 6032 - 1492 2176 51110 684 chain 136768 chr2 243199373 + 77873981 77875458 L1PA2 6032 + 4550 6027 26685 1477 chain 58307 chr2 243199373 + 77884379 77885079 LTR12 884 - 0 884 53804 393 0 184 307 chain 36900 chr2 243199373 + 77887311 77887772 LTR2 463 + 0 463 73656 129 0 3 248 2 3 28 1 0 28 1 0 24 chain 3357 chr2 243199373 + 77909271 77909310 MLT1A0 366 - 65 104 217936 39 chain 48711 chr2 243199373 + 77953112 77953694 L1PA6 6164 - 8 591 59943 18 0 1 564 chain 102387 chr2 243199373 + 77960995 77962445 LTR12C 1709 - 0 1709 36165 77 6 5 378 1 0 12 24 0 9 3 20 52 0 47 105 0 78 73 0 118 206 6 0 58 5 7 43 0 1 32 12 55 37 4 5 19 16 0 10 7 8 30 0 1 8 9 7 208 chain 13698 chr2 243199373 + 77974583 77974801 MER61B 427 + 203 427 145606 87 37 43 94 chain 31530 chr2 243199373 + 77976082 77976510 L1PA6 6164 + 5721 6149 81596 150 0 1 91 19 18 21 0 7 8 7 0 132 chain 541964 chr2 243199373 + 77980898 77986904 L1PA2 6032 + 21 6032 2512 51 1 2 182 1 0 454 0 7 170 0 1 429 3 2 523 7 0 1162 0 1 1162 0 2 918 0 1 719 0 1 224 chain 35304 chr2 243199373 + 77999515 77999971 THE1B-int 1605 - 8 482 75791 226 0 17 101 9 10 120 chain 23334 chr2 243199373 + 78004430 78004773 THE1B 368 - 0 368 114007 64 0 1 28 1 2 30 18 29 10 8 6 30 1 0 109 0 15 44 chain 7882 chr2 243199373 + 78004777 78004869 Tigger3c 601 - 61 153 171802 92 chain 105439 chr2 243199373 + 78020883 78022048 L1PA3long 6157 - 0 1164 35387 516 1 0 648 chain 67716 chr2 243199373 + 78022048 78022789 L1PA3long 6157 + 4241 4988 49068 558 0 6 183 chain 22660 chr2 243199373 + 78031607 78031947 MER4E1 777 - 7 324 117276 205 52 29 83 chain 49515 chr2 243199373 + 78034728 78035311 LTR14C 587 + 0 587 59381 516 0 4 67 chain 11513 chr2 243199373 + 78035311 78035486 MER4E 760 + 593 760 154239 36 1 0 54 2 1 7 10 0 37 3 7 25 chain 163532 chr2 243199373 + 78037616 78039615 L1PA7 6471 + 4368 6464 22870 203 1 0 7 0 1 57 0 115 515 39 0 300 0 1 56 0 4 699 1 17 121 chain 49075 chr2 243199373 + 78042355 78042951 LTR12_ 688 - 0 688 59692 76 1 3 439 3 93 77 chain 23507 chr2 243199373 + 78043099 78043392 AluSg7 307 + 10 303 113091 113 1 0 8 0 1 171 chain 45215 chr2 243199373 + 78046594 78047153 MLT2A2 560 + 0 560 62812 97 0 1 462 chain 330298 chr2 243199373 + 78069774 78073514 L1PA5 6144 + 2340 6144 12192 316 4 5 676 0 2 1958 0 4 339 2 0 148 0 57 285 1 3 11 chain 61107 chr2 243199373 + 78097975 78098681 L1PA5 6144 - 0 709 52290 99 0 2 196 0 2 18 1 0 392 chain 29707 chr2 243199373 + 78127320 78127726 LTR7 482 - 5 482 85802 169 0 1 42 9 41 110 25 63 51 chain 34535 chr2 243199373 + 78159326 78159751 L1PA8 5853 - 1605 2031 76508 381 0 1 44 chain 110272 chr2 243199373 + 78159751 78161320 L1PA8 5853 + 4255 5853 34135 438 0 31 76 0 1 4 1 0 205 6 4 80 0 1 44 2 9 211 15 0 7 13 28 170 1 0 44 2 0 49 49 45 38 2 1 4 0 1 14 1 0 93 chain 29848 chr2 243199373 + 78192265 78192688 LTR7B 505 + 0 497 85290 95 11 21 59 0 38 12 0 25 6 1 0 24 0 2 36 0 1 46 1 0 23 4 5 48 2 1 55 chain 291936 chr2 243199373 + 78192696 78196270 HERVH-int 3825 + 0 3825 13911 49 10 12 204 7 5 213 2 1 4 1 0 12 37 31 39 1 0 10 1 0 24 29 0 15 0 37 42 2 1 57 0 1 6 0 2 13 0 3 549 7 6 349 4 31 299 0 10 1095 8 218 260 0 2 225 chain 29605 chr2 243199373 + 78197546 78197976 LTR7B 505 + 0 503 86197 106 1 11 58 0 38 12 3 27 26 0 2 38 0 1 46 1 0 23 4 5 32 2 1 15 2 1 61 chain 18264 chr2 243199373 + 78216605 78216820 L1PA5 6144 - 2 213 132169 7 4 0 204 chain 4241 chr2 243199373 + 78259339 78259484 MLT1A 405 - 239 385 203996 39 86 87 20 chain 24947 chr2 243199373 + 78301885 78302187 AluY 311 + 0 299 105066 10 2 0 116 1 0 173 chain 115918 chr2 243199373 + 78378267 78379577 L1PA4 6152 + 4831 6141 32488 1310 chain 115282 chr2 243199373 + 78388025 78389454 L1PA7 6471 - 4082 5521 32686 214 0 1 213 0 12 190 1 0 366 3 0 251 1 4 6 3 0 53 1 2 127 chain 310729 chr2 243199373 + 78389464 78393283 L1PA7 6471 + 2579 6458 12974 22 1 0 25 0 1 5 4 0 784 0 1 80 1 0 83 1 0 5 0 2 249 1 0 59 5 57 234 0 4 312 0 1 54 1 0 4 0 1 106 0 4 283 8 6 75 1 0 28 0 1 164 0 1 327 7 8 57 0 3 688 0 1 59 1 0 85 chain 5685 chr2 243199373 + 78395102 78395174 L1MB5 1630 + 647 719 188244 72 chain 48216 chr2 243199373 + 78396825 78397372 L1P1 4361 - 1180 1730 60189 63 0 2 168 0 1 316 chain 187209 chr2 243199373 + 78397372 78399426 L1PA3long 6157 + 4091 6149 20316 266 0 4 1788 chain 44135 chr2 243199373 + 78425070 78425672 L1PB 1623 + 863 1450 64034 66 0 1 305 13 12 62 15 1 136 1 0 4 chain 31462 chr2 243199373 + 78453348 78453739 THE1B-int 1605 - 0 393 81717 70 3 5 318 chain 12071 chr2 243199373 + 78473259 78473400 L1PA7 6471 - 1982 2123 151896 141 chain 2450 chr2 243199373 + 78473400 78473426 L1PA7 6471 + 4517 4543 231180 26 chain 9045 chr2 243199373 + 78473428 78473534 L1PA7 6471 + 4544 4650 165345 106 chain 10866 chr2 243199373 + 78473550 78473689 L1PA7 6471 + 4674 4813 156712 139 chain 139834 chr2 243199373 + 78473689 78475331 L1PA7 6471 + 4817 6461 26165 168 1 0 33 0 2 419 0 1 181 1 0 694 0 1 145 chain 59476 chr2 243199373 + 78491712 78492631 L1PA15 4387 + 3450 4356 53126 74 1 3 9 1 3 116 2 0 155 1 8 72 13 11 32 1 0 77 2 1 91 3 2 23 4 3 54 5 4 14 4 0 14 1 0 54 3 0 44 25 18 24 chain 36783 chr2 243199373 + 78501562 78501996 LTR19B 566 + 0 434 73823 434 chain 15227 chr2 243199373 + 78501996 78502176 L1PA5 6144 + 5955 6135 140696 180 chain 168269 chr2 243199373 + 78502193 78504138 L1PA4 6152 + 4188 6136 22254 576 8 11 279 0 5 675 28 22 282 0 1 97 chain 11624 chr2 243199373 + 78527734 78527866 L1PA5 6144 - 4 136 153797 132 chain 3335 chr2 243199373 + 78543257 78543329 MER45C 884 - 716 789 218326 18 21 22 33 chain 79582 chr2 243199373 + 78547994 78549084 L1PA8 5853 + 4749 5853 43791 85 0 1 173 10 12 39 0 3 9 0 1 492 1 0 15 0 4 26 2 0 52 1 0 4 0 1 12 19 24 41 2 1 16 1 0 21 1 4 68 chain 29779 chr2 243199373 + 78550726 78551101 MLT2A1 477 - 93 477 85545 184 0 1 25 1 5 150 0 4 15 chain 123418 chr2 243199373 + 78553819 78555191 L1PA4 6152 - 1 1378 29910 332 0 1 510 0 4 530 chain 89375 chr2 243199373 + 78608141 78609245 L1PA7 6471 + 5355 6469 39854 159 5 1 81 0 3 22 0 6 6 0 1 66 2 3 28 5 6 24 0 2 706 chain 8608 chr2 243199373 + 78634049 78634358 L1MA5A 2387 - 12 267 167685 15 3 0 4 0 1 15 1 0 9 46 29 7 1 0 21 5 7 26 65 34 25 13 11 16 2 0 35 chain 58327 chr2 243199373 + 78649777 78650413 L1PA3long 6157 + 5521 6157 53792 636 chain 30460 chr2 243199373 + 78652864 78653208 L1PA4 6152 - 0 340 83511 9 4 0 331 chain 16459 chr2 243199373 + 78656693 78656924 MER52C 1267 + 1029 1253 137042 20 3 0 50 3 0 42 1 0 112 chain 24661 chr2 243199373 + 78676957 78677242 AluSq10 312 + 8 292 106668 249 1 0 35 chain 11910 chr2 243199373 + 78687936 78688068 L1PA7 6471 - 3 135 152554 132 chain 17942 chr2 243199373 + 78688068 78688273 L1PA8A 6298 - 750 957 132999 57 0 2 148 chain 37956 chr2 243199373 + 78688286 78688769 L1PA8A 6298 + 5807 6290 72201 21 4 5 173 1 0 284 chain 23485 chr2 243199373 + 78695235 78695514 L1PA4 6152 + 5871 6152 113193 273 0 2 6 chain 216261 chr2 243199373 + 78705024 78707482 L1PA4 6152 + 3689 6143 18102 116 4 0 2338 chain 93589 chr2 243199373 + 78711714 78712745 L1PA4 6152 + 5103 6134 38479 1031 chain 133644 chr2 243199373 + 78719532 78721059 L1PA4 6152 - 0 1525 27291 5 3 0 108 0 1 30 1 3 4 1 0 699 1 0 675 chain 170500 chr2 243199373 + 78727116 78729152 L1PA6 6164 - 3 2039 21992 155 2 3 177 1 0 24 0 2 430 0 1 61 1 0 454 2 0 5 3 5 360 2 0 359 chain 58999 chr2 243199373 + 78783226 78784005 L1PB 1623 + 666 1453 53398 7 0 10 158 0 1 4 1 0 260 0 4 76 1 2 52 3 0 5 0 3 62 13 7 129 1 0 7 chain 3373 chr2 243199373 + 78804167 78804210 L1PA4 6152 + 5960 6003 217612 43 chain 12498 chr2 243199373 + 78804211 78804361 L1PA4 6152 + 6003 6151 150250 143 2 0 5 chain 29517 chr2 243199373 + 78825342 78825657 AluYb8 318 - 3 318 86577 315 chain 191047 chr2 243199373 + 78846817 78848995 L1PA4 6152 - 0 2188 19955 10 0 3 35 0 6 49 0 1 37 7 0 113 0 1 588 0 4 424 12 15 593 1 0 309 chain 13827 chr2 243199373 + 78850798 78850951 L1PA3long 6157 - 1290 1443 145156 153 chain 106091 chr2 243199373 + 78850952 78852118 L1PA3long 6157 + 4854 6024 35236 456 0 4 710 chain 465034 chr2 243199373 + 78881779 78887999 L1PA8A 6298 + 56 6277 8219 9 3 0 4 2 0 9 7 1 24 25 21 6 7 0 18 1 0 9 2 1 20 2 0 9 2 0 17 22 18 7 1 0 6 2 1 8 1 0 13 5 0 9 2 0 31 15 14 18 9 1 77 2 0 25 4 2 77 1 0 69 6 9 217 4 0 296 41 32 10 0 14 159 9 7 83 0 1 22 0 1 68 0 1 490 0 1 266 5 2 9 0 4 94 1 0 122 1 0 13 0 2 87 0 1 299 1 2 305 0 1 155 0 2 16 18 21 50 0 1 15 0 1 352 0 1 46 13 8 11 1 6 192 2 3 335 3 5 172 0 1 4 1 6 98 0 18 111 0 1 27 0 2 7 1 2 56 0 1 142 0 4 234 4 0 168 2 0 17 2 1 78 0 2 607 1 9 91 chain 243729 chr2 243199373 + 78899900 78903816 MER61-int 3695 - 0 3617 16577 53 331 7 40 13 5 220 16 20 193 2 0 4 2 0 7 0 1 30 3 5 88 0 1 124 1 0 7 3 4 15 16 12 94 1 0 44 0 1 110 1 0 58 1 0 127 0 1 39 10 0 140 1 0 81 4 0 30 12 11 174 5 7 131 44 45 187 0 2 56 6 7 25 0 1 56 1 0 65 1 0 271 23 16 316 0 1 14 0 1 4 2 1 5 0 97 93 0 1 20 1 2 51 1 0 7 7 8 47 15 1 48 0 4 87 5 4 34 0 5 31 39 0 45 20 17 58 chain 67901 chr2 243199373 + 78916296 78917231 L1P3 4156 + 3188 4112 49287 289 25 17 37 4 1 42 0 3 31 0 1 224 3 0 108 0 1 165 2 0 5 chain 21694 chr2 243199373 + 78917231 78917492 L1PA8A 6298 + 6031 6292 121415 261 chain 4099 chr2 243199373 + 78917839 78917891 MER6B 211 + 3 59 205966 12 0 4 40 chain 72197 chr2 243199373 + 78922972 78923780 L1PA4 6152 - 6 813 47379 768 1 0 39 chain 165689 chr2 243199373 + 78928992 78930814 L1PA3long 6157 + 4330 6156 22555 980 0 4 842 chain 301083 chr2 243199373 + 78949679 78953076 L1PA5 6144 - 7 3401 13369 11 1 0 162 13 11 3210 chain 21938 chr2 243199373 + 78955724 78955971 L1P1 4361 - 1322 1569 120468 247 chain 7634 chr2 243199373 + 78968938 78969025 MER4D 903 - 623 710 173327 87 chain 4002 chr2 243199373 + 78976230 78976277 MADE1 96 + 49 96 207362 47 chain 79375 chr2 243199373 + 78979202 78980096 L1PA5 6144 + 5240 6138 43876 51 0 4 843 chain 21375 chr2 243199373 + 78985328 78985703 LTR7 482 + 0 482 122600 23 0 23 55 15 14 13 5 56 16 1 11 10 8 40 24 8 7 13 0 1 30 0 1 111 9 0 34 chain 13322 chr2 243199373 + 78988878 78989026 HERVH-int 3825 + 3671 3819 147002 148 chain 37559 chr2 243199373 + 78990369 78990833 LTR2 463 + 0 463 72738 55 0 3 49 9 8 27 3 0 321 chain 6392 chr2 243199373 + 79006651 79007029 LTR12C 1709 + 992 1542 182089 63 282 454 33 chain 154515 chr2 243199373 + 79019736 79022277 HUERS-P2-int 2744 - 0 2721 24043 29 2 0 8 27 23 29 3 0 40 1 0 14 26 22 14 29 25 29 2 0 61 2 0 8 3 2 295 1 0 62 0 2 383 0 1 103 0 1 195 15 23 104 1 10 63 1 10 9 1 0 5 0 1 24 2 0 148 1 2 4 1 0 24 66 65 154 4 0 6 12 14 125 0 1 68 143 335 12 79 71 29 1 0 7 2 0 29 1 0 24 2 0 8 chain 20387 chr2 243199373 + 79024911 79025287 MSTA 426 - 22 426 125938 78 14 33 49 12 9 9 0 2 6 7 3 12 0 2 39 32 39 10 5 10 103 chain 24986 chr2 243199373 + 79054294 79054562 L1PA3long 6157 - 437 705 104882 268 chain 38467 chr2 243199373 + 79054562 79054986 L1PA3long 6157 + 5735 6157 71492 302 2 0 120 chain 28476 chr2 243199373 + 79057670 79057983 AluYa5 310 - 0 310 91281 184 1 0 28 3 1 97 chain 8723 chr2 243199373 + 79109753 79109858 U6 107 + 0 105 167074 105 chain 29736 chr2 243199373 + 79112652 79112969 AluYb8 318 + 0 317 85708 317 chain 3870 chr2 243199373 + 79115881 79115933 L1MA4 2864 - 55 105 209307 43 2 0 7 chain 5350 chr2 243199373 + 79120823 79120895 L1PB1 5432 + 5353 5422 191534 17 1 0 21 1 0 13 1 0 18 chain 21671 chr2 243199373 + 79121827 79122096 AluSc8 310 + 40 309 121495 94 0 1 64 1 0 110 chain 28162 chr2 243199373 + 79129354 79129651 AluYa5 310 - 13 310 92423 297 chain 12676 chr2 243199373 + 79156944 79157109 L1PA16 3655 + 3431 3592 149552 147 3 0 8 1 0 6 chain 8301 chr2 243199373 + 79164809 79164903 L1PA3long 6157 - 0 94 169394 94 chain 3246 chr2 243199373 + 79166715 79166755 MIRb 242 + 61 103 220079 6 0 2 34 chain 49784 chr2 243199373 + 79173247 79173867 L1PA7 6471 - 335 975 59171 263 0 16 96 1 2 142 0 3 118 chain 25560 chr2 243199373 + 79173867 79174198 L1PA7 6471 + 6140 6466 101929 136 15 11 36 2 1 142 chain 4919 chr2 243199373 + 79198048 79198109 MER58A 224 + 122 183 196067 61 chain 28960 chr2 243199373 + 79201175 79201482 AluYa5 310 - 3 310 89176 307 chain 7304 chr2 243199373 + 79260291 79260373 L1PA7 6471 - 942 1024 175409 82 chain 77569 chr2 243199373 + 79260374 79261320 L1PA7 6471 + 5521 6464 44706 100 1 0 527 1 0 160 0 6 6 7 1 23 2 1 119 chain 25268 chr2 243199373 + 79276218 79276679 L1MA2 4263 + 3380 4110 103376 14 1 0 4 0 1 175 44 319 59 12 7 5 0 3 53 5 9 29 34 27 19 1 0 6 chain 27068 chr2 243199373 + 79278525 79278915 LTR7 482 + 0 473 96042 53 24 62 109 5 6 31 0 31 13 0 3 6 0 10 149 chain 288729 chr2 243199373 + 79278926 79282539 HERVH-int 3825 + 0 3825 14102 212 0 11 312 12 11 24 1 0 10 1 0 10 5 0 7 23 55 4 1 0 41 1 0 12 65 2 68 1 0 457 16 1 448 4 31 202 0 3 94 0 10 261 0 2 9 0 1 6 0 1 765 9 11 39 8 218 260 0 2 225 chain 468790 chr2 243199373 + 79304865 79310626 L1PA7 6471 - 4 5753 8079 6 4 0 712 1 0 47 0 2 50 1 0 29 1 0 635 0 1 4 1 0 3 8 0 234 5 6 369 0 1 361 2 1 169 2 1 313 1 0 4 0 3 410 4 8 466 10 0 111 0 2 196 0 1 729 0 1 248 2 1 56 14 15 456 0 1 97 chain 29503 chr2 243199373 + 79316634 79317128 LTR10E 629 - 68 607 86627 31 1 0 42 63 62 53 1 0 25 0 1 4 1 0 6 1 50 113 18 17 135 chain 29143 chr2 243199373 + 79319158 79319546 MER48 407 - 0 407 88350 250 4 24 59 2 1 37 2 1 4 0 1 30 chain 181596 chr2 243199373 + 79322329 79326046 HERVH48-int 3304 - 59 3205 20836 26 93 67 69 66 49 62 2 0 4 1 0 45 1 0 5 2 0 21 2 1 10 212 164 5 2 0 11 2 0 5 2 0 19 2 0 27 2 0 17 4 2 39 25 27 225 6 5 46 5 4 8 1 0 67 5 3 18 1 0 54 326 4 84 5 6 98 3 2 16 1 0 270 2 1 89 1 0 221 1 0 6 1 0 11 2 1 121 11 5 5 1 0 5 2 0 16 1 0 26 2 0 20 1 0 16 1 0 4 2 0 22 2 0 3 8 0 32 2 0 15 1 0 19 1 0 11 3 0 118 27 19 68 2 1 71 71 67 5 1 0 16 4 0 17 21 15 54 3 1 10 1 0 57 34 29 9 6 0 14 1 0 72 1 0 4 6 2 63 65 42 36 1 0 25 2 0 9 4 2 4 1 0 10 27 18 10 2 0 7 6 2 8 2 0 7 7 3 6 2 0 11 chain 540335 chr2 243199373 + 79332832 79338822 L1PA3long 6157 - 10 6138 2766 1486 0 1 2802 0 5 398 0 1 548 1 129 521 0 1 102 0 1 81 0 1 51 chain 23220 chr2 243199373 + 79345523 79345842 AluY 311 + 14 309 114596 119 9 0 36 5 0 128 10 0 12 chain 8390 chr2 243199373 + 79355236 79355340 LTR47B 464 - 360 464 168908 104 chain 28125 chr2 243199373 + 79390296 79390621 LTR17 781 - 455 781 92552 319 0 1 6 chain 370151 chr2 243199373 + 79390936 79395260 HERV17-int 4347 - 0 4335 11092 7 0 1 696 7 19 477 1 0 241 0 1 129 1 2 545 0 1 61 0 1 689 0 1 58 1 0 1279 1 0 14 12 10 36 1 0 52 1 0 15 chain 41302 chr2 243199373 + 79396959 79397474 LTR17 781 - 1 522 67530 419 10 15 18 1 2 67 chain 28195 chr2 243199373 + 79438471 79438883 LTR7 482 - 0 482 92323 218 8 40 109 11 49 20 15 15 31 chain 295835 chr2 243199373 + 79440662 79444432 HERVH-int 3825 - 0 3825 13653 487 8 218 354 0 30 275 0 1 175 0 2 858 0 1 643 0 4 48 1 0 5 42 1 26 2 1 40 1 0 25 4 1 11 1 0 15 147 0 24 1 0 9 2 1 10 0 3 72 10 12 139 2 1 333 chain 2284 chr2 243199373 + 79443683 79443710 HERVH-int 3825 - 3142 3169 214510 27 chain 4212 chr2 243199373 + 79443724 79443820 HERVH-int 3825 - 3291 3389 204406 45 36 38 15 chain 28400 chr2 243199373 + 79444442 79444833 LTR7 482 - 8 482 91578 166 0 3 25 3 34 21 0 1 40 0 10 59 11 49 66 chain 8345 chr2 243199373 + 79449889 79449991 MLT1A0 366 + 55 157 169148 102 chain 3279 chr2 243199373 + 79508080 79508253 LTR16A2 485 + 301 476 219396 22 119 121 32 chain 545115 chr2 243199373 + 79509386 79515397 L1PA3long 6157 - 1 6156 2060 2884 0 7 1144 0 1 398 1 0 282 1 0 219 0 1 311 0 128 66 0 7 423 0 1 131 0 1 151 chain 27967 chr2 243199373 + 79535471 79535859 L1MA5A 2387 - 803 1210 93120 17 13 11 49 2 23 307 chain 3547 chr2 243199373 + 79542981 79543071 L1MB8 1703 - 530 623 214589 23 37 40 30 chain 31882 chr2 243199373 + 79588719 79589160 MLT2A1 477 - 0 477 81043 51 3 41 178 9 7 26 9 6 61 0 1 88 0 2 16 chain 62848 chr2 243199373 + 79603621 79604326 L1PA4 6152 - 9 714 51513 705 chain 50658 chr2 243199373 + 79612655 79613290 L1PA8 5853 - 0 630 58530 93 1 0 19 2 1 52 2 1 8 1 0 69 2 0 46 2 1 145 0 2 193 chain 21465 chr2 243199373 + 79622368 79622611 L1PA4 6152 - 0 243 122272 243 chain 282534 chr2 243199373 + 79635445 79638579 L1PA3long 6157 - 13 3154 14502 325 1 6 313 0 1 446 1 0 4 0 1 413 1 0 743 0 2 887 chain 119093 chr2 243199373 + 79638579 79639896 L1PA3long 6157 + 1700 3018 31304 559 0 1 758 chain 164517 chr2 243199373 + 79691113 79693040 L1PA5 6144 - 0 1932 22682 11 1 3 23 1 0 33 0 1 42 1 0 27 0 1 4 1 2 112 1 0 597 0 1 541 0 1 93 0 1 320 0 1 100 1 0 18 chain 370182 chr2 243199373 + 79693040 79697240 L1PA5 6144 + 8 4216 11090 302 0 7 406 1 2 1214 1 0 1236 0 1 1040 chain 6052 chr2 243199373 + 79698425 79698658 MLT1A0 366 - 45 307 184796 48 120 129 31 12 32 22 chain 66258 chr2 243199373 + 79713202 79713938 L1PA4 6152 - 1 737 49972 736 chain 20949 chr2 243199373 + 79715182 79715469 AluSp 311 + 23 307 124110 25 17 14 49 1 0 13 0 1 182 chain 3968 chr2 243199373 + 79752714 79752759 MADE1 96 - 51 96 207867 45 chain 23606 chr2 243199373 + 79768756 79769041 AluSc 308 - 14 299 112544 285 chain 14205 chr2 243199373 + 79814170 79814378 L1PB2 3958 - 120 324 143861 63 1 0 27 4 2 64 5 4 44 chain 24133 chr2 243199373 + 79824318 79824611 AluY 311 + 2 302 109563 130 0 1 137 1 7 25 chain 32065 chr2 243199373 + 79877765 79878124 L1PA2 6032 - 4 363 80744 359 chain 16907 chr2 243199373 + 79917556 79917750 L1PA8 5853 - 289 483 135829 194 chain 123435 chr2 243199373 + 79918638 79920159 L1PA7 6471 + 4947 6469 29901 203 1 2 23 0 1 29 1 2 4 1 0 404 1 4 87 1 0 4 0 1 249 12 8 171 0 1 153 9 10 18 1 0 137 1 0 11 chain 127237 chr2 243199373 + 79954705 79956141 L1PA3long 6157 - 0 1438 28759 769 7 6 94 0 4 454 1 0 111 chain 30283 chr2 243199373 + 79994183 79994799 L1M1 2793 - 1542 2129 83983 61 9 8 86 1 3 86 12 11 91 15 12 54 1 0 8 2 0 29 17 16 11 2 0 9 4 1 20 2 0 5 71 56 20 chain 43071 chr2 243199373 + 80008094 80008627 MER41A 554 - 21 554 65333 130 7 6 252 0 1 144 chain 42416 chr2 243199373 + 80030354 80030865 MER9a1 513 - 0 513 66126 55 0 1 72 1 2 324 1 0 45 0 1 13 chain 93772 chr2 243199373 + 80035918 80037034 L1PA7 6471 - 2 1123 38417 714 0 1 114 1 0 5 0 1 10 0 3 103 1 2 168 chain 17671 chr2 243199373 + 80037034 80037245 L1P2 5180 + 1976 2188 133550 76 0 1 135 chain 86267 chr2 243199373 + 80037666 80038631 L1PA4 6152 - 12 981 41050 858 0 4 107 chain 4226 chr2 243199373 + 80040196 80040248 MER81 114 - 33 85 204215 52 chain 153697 chr2 243199373 + 80041385 80043526 L1PB1 5432 - 12 2102 24127 16 1 0 13 1 0 21 1 0 18 7 0 6 2 0 14 8 5 19 25 14 14 2 10 33 7 6 12 1 0 51 18 12 10 1 0 12 1 0 18 49 0 11 1 2 171 0 3 280 5 6 18 1 2 117 0 1 232 0 10 99 0 1 171 0 1 180 0 3 84 0 5 116 2 1 272 chain 12951 chr2 243199373 + 80044160 80044348 L1PA4 6152 - 0 185 148423 5 3 0 145 23 23 12 chain 30643 chr2 243199373 + 80064210 80064645 MLT2A1 477 - 6 477 83136 31 3 47 9 8 0 201 0 1 11 3 0 59 5 7 105 chain 26487 chr2 243199373 + 80067892 80068194 AluYk4 311 - 14 311 98091 54 5 0 243 chain 20813 chr2 243199373 + 80101672 80101944 AluSp 311 + 8 288 124560 73 0 14 31 7 5 151 4 0 6 chain 349571 chr2 243199373 + 80105012 80109439 L1PA8A 6298 - 25 4469 11620 80 2 3 498 6 0 5 3 0 8 16 7 101 0 2 84 5 13 99 0 4 261 0 1 121 0 4 160 3 0 200 0 1 549 0 1 102 0 1 96 6 7 499 1 0 180 0 1 39 15 19 158 0 4 166 0 1 87 16 12 35 1 2 85 0 4 15 0 1 54 0 2 302 4 5 365 chain 6560 chr2 243199373 + 80118003 80118200 MLT1A0 366 - 164 364 180784 34 13 15 29 79 80 42 chain 9558 chr2 243199373 + 80127886 80128030 L1MA3 4352 + 4171 4307 162786 64 4 0 24 2 0 23 1 0 6 1 0 19 chain 20868 chr2 243199373 + 80181085 80181437 THE1D 372 - 10 372 124399 17 6 5 116 1 0 12 0 1 15 0 3 9 21 19 68 26 36 61 chain 6909 chr2 243199373 + 80212032 80212118 MER58A 224 + 21 116 178129 13 0 9 73 chain 45805 chr2 243199373 + 80217844 80218367 L1P1 4361 - 657 1184 62228 217 0 1 4 0 3 302 chain 548037 chr2 243199373 + 80320128 80326280 L1PA4 6152 - 0 6152 1702 6 4 0 136 5 6 1716 0 2 35 0 1 309 0 1 1299 2 0 762 0 1 1138 5 4 49 0 1 686 chain 28709 chr2 243199373 + 80337984 80338362 THE1C 375 - 0 375 90297 25 1 0 163 2 3 54 9 6 124 chain 13282 chr2 243199373 + 80369774 80370145 MER107 203 - 0 197 147167 35 6 7 7 0 1 54 177 0 23 1 2 68 chain 6223 chr2 243199373 + 80369902 80369970 MER107 203 - 129 197 183388 68 chain 248385 chr2 243199373 + 80403259 80406491 HERVL-int 5654 - 0 3334 16341 126 2 3 95 0 1 78 0 4 36 0 1 92 1 0 225 26 18 87 0 98 173 0 1 252 0 2 89 1 2 257 5 4 346 20 21 157 33 29 24 7 6 138 1 0 141 1 0 598 0 9 221 chain 6206 chr2 243199373 + 80417317 80417404 LTR32 486 - 61 149 183538 45 3 4 39 chain 124538 chr2 243199373 + 80430322 80431894 THE1B-int 1605 - 6 1605 29530 130 0 1 1001 10 35 17 0 2 237 1 0 176 chain 520950 chr2 243199373 + 80437356 80443458 L1PA5 6144 - 16 6088 5061 478 2 0 1028 1 0 126 0 1 922 0 5 1317 0 2 516 45 0 291 0 1 206 1 0 65 9 0 136 1 6 881 1 15 76 chain 42280 chr2 243199373 + 80539204 80539788 LTR10A 586 - 0 586 66296 77 8 6 158 0 1 43 19 21 11 1 0 4 0 1 55 6 7 202 chain 12225 chr2 243199373 + 80601649 80601969 MLT1B 390 - 52 332 151321 88 110 79 8 0 1 29 14 5 37 10 9 24 chain 22397 chr2 243199373 + 80614170 80614427 AluY 311 + 39 296 118496 257 chain 4879 chr2 243199373 + 80618279 80618341 MER96B 391 - 285 347 196498 62 chain 22626 chr2 243199373 + 80631128 80631490 L1P3 4156 - 83 660 117444 125 0 209 61 0 2 74 0 1 15 0 1 7 43 47 11 3 1 23 chain 3180 chr2 243199373 + 80726573 80726608 L1PA13 3608 - 2789 2824 221353 35 chain 4937 chr2 243199373 + 80754501 80754613 MER5A 189 - 50 161 195830 41 42 41 29 chain 141537 chr2 243199373 + 80764045 80766118 L1PA8 5853 - 0 1762 25893 23 9 0 8 0 9 53 1 0 19 2 1 52 1 0 9 2 1 12 1 0 58 2 0 44 1 0 122 0 1 188 0 1 31 0 1 27 307 0 182 0 2 18 0 4 182 2 0 693 3 0 21 chain 3057 chr2 243199373 + 80798147 80798183 MADE1 96 - 60 96 223860 36 chain 9249 chr2 243199373 + 80824159 80824283 L1P3 4156 - 19 140 163923 20 2 1 9 2 0 91 chain 92386 chr2 243199373 + 80824283 80825589 L1PA8 5853 + 4544 5853 38847 74 1 0 113 20 6 186 19 19 64 9 10 69 0 3 227 0 15 61 5 3 170 1 0 36 6 8 70 2 1 9 6 5 47 2 1 19 2 1 48 0 4 40 chain 12962 chr2 243199373 + 80826911 80827062 L1PA3long 6157 - 5 161 148387 13 0 5 138 chain 94108 chr2 243199373 + 80853840 80854993 L1PA7 6471 - 2 1159 38323 8 2 0 222 0 1 104 1 0 129 4 2 374 0 5 18 0 4 261 7 6 23 chain 56047 chr2 243199373 + 80854993 80855697 L1PA7 6471 + 4564 5302 54880 391 4 2 100 0 2 110 19 53 80 chain 3572 chr2 243199373 + 80885969 80886046 L1MB3 1562 + 1431 1505 214102 8 2 0 17 7 8 6 2 0 35 chain 24273 chr2 243199373 + 80887356 80887663 AluSp 311 - 9 311 108824 7 8 0 200 1 4 91 chain 4305 chr2 243199373 + 80895187 80895237 LTR33A_ 513 - 333 383 203159 50 chain 17618 chr2 243199373 + 80910879 80911184 MER1B 344 - 8 307 133942 47 29 27 46 6 0 124 33 35 20 chain 216599 chr2 243199373 + 80917534 80919988 L1PA5 6144 - 2 2468 18078 845 0 3 641 0 10 21 1 0 946 chain 12403 chr2 243199373 + 80925874 80926200 THE1C 375 - 39 375 150626 20 1 2 7 1 0 66 47 55 30 9 13 12 40 54 7 14 0 57 3 1 12 chain 3131 chr2 243199373 + 80958764 80958800 L1MA1 4479 + 2632 2668 222340 36 chain 12825 chr2 243199373 + 80958832 80959009 THE1B-int 1605 - 1427 1605 148955 14 7 8 156 chain 322202 chr2 243199373 + 80964353 80968790 L1PA8 5853 + 108 5847 12513 191 39 27 62 5 6 42 23 10 168 0 1 16 0 3 183 0 1 4 8 7 79 0 1 465 0 1 95 0 1 236 3 1 165 1 0 9 0 6 18 0 4 43 0 2 146 0 4 27 1 0 167 0 1 55 9 13 7 0 1 95 10 14 290 0 1 46 11 1296 12 0 11 35 3 1 13 5 8 140 1 0 31 8 9 293 4 5 96 11 5 135 72 76 21 0 2 84 4 5 123 5 8 227 0 1 105 1 0 47 2 0 71 2 1 5 1 0 48 9 8 16 2 1 86 chain 333475 chr2 243199373 + 81035799 81039732 L1PA6 6164 + 2149 6160 12065 184 0 1 107 0 3 352 0 1 392 0 1 127 1 0 490 0 11 203 0 1 43 4 9 731 0 26 135 0 6 273 4 6 68 0 1 4 1 0 79 0 2 314 0 1 43 0 2 105 0 11 238 7 13 28 chain 376585 chr2 243199373 + 81042967 81048147 L1PA8A 6298 + 848 6077 10862 11 0 1 5 1 0 62 13 14 42 85 104 45 12 13 67 70 72 141 2 1 202 16 15 47 5 1 98 0 2 107 1 2 4 1 0 428 15 0 8 5 20 81 0 2 65 0 2 155 0 2 439 1 4 72 0 2 224 5 9 25 0 1 32 0 1 395 0 1 220 0 1 590 0 4 137 1 2 256 25 26 45 0 1 149 0 1 266 0 2 13 6 7 411 1 0 4 0 1 69 chain 59866 chr2 243199373 + 81098447 81099196 LTR17 781 + 8 781 52888 111 0 9 121 3 4 46 10 0 28 0 1 398 1 23 24 0 1 7 chain 30520 chr2 243199373 + 81102923 81103355 LTR7 482 - 0 482 83385 176 0 1 9 0 31 42 1 12 45 20 27 139 chain 247189 chr2 243199373 + 81103899 81106918 HERVH-int 3825 - 828 3825 16387 695 0 1 157 0 4 424 8 35 375 0 2 523 0 3 9 0 2 11 0 1 55 3 2 42 0 37 15 29 0 24 1 0 10 1 0 30 72 6 200 2 1 333 chain 10649 chr2 243199373 + 81106920 81107072 LTR7 482 - 0 219 157608 115 15 82 22 chain 12294 chr2 243199373 + 81107148 81107286 LTR7 482 - 344 482 151031 138 chain 30508 chr2 243199373 + 81108809 81109145 L1PA2 6032 - 4 340 83410 336 chain 88202 chr2 243199373 + 81146520 81147578 MER11C 1089 + 0 1074 40299 246 0 9 408 0 1 24 0 4 45 0 1 325 1 2 9 chain 29278 chr2 243199373 + 81172380 81172691 AluYa5 310 - 1 310 87656 183 2 0 126 chain 24433 chr2 243199373 + 81179509 81179938 L1PA15 4387 - 71 492 107899 22 49 46 31 10 5 80 2 1 27 1 0 54 5 8 109 1 0 38 chain 80942 chr2 243199373 + 81183143 81184148 L1PA8 5853 - 0 1732 43220 93 1 0 19 2 1 52 1 0 9 1 0 70 2 0 45 1 0 386 3 735 103 1 0 90 0 3 126 chain 22572 chr2 243199373 + 81190134 81190632 L1PA13 3608 - 3038 3495 117711 34 5 4 12 30 26 13 1 0 15 9 5 16 9 7 10 1 0 12 1 0 127 2 0 66 45 26 14 9 6 14 1 0 20 0 1 4 5 2 23 chain 2802 chr2 243199373 + 81212002 81212166 MLT1D 503 - 38 201 228704 14 9 10 15 98 96 28 chain 3056 chr2 243199373 + 81213234 81213266 LTR8A 794 - 509 541 223880 32 chain 3383 chr2 243199373 + 81219687 81219747 L1MA3 4352 + 4292 4347 217409 25 1 0 11 6 2 17 chain 37555 chr2 243199373 + 81238255 81238702 L1PA7 6471 - 11 456 72746 143 1 0 36 1 0 266 chain 211507 chr2 243199373 + 81254768 81257165 L1PA3long 6157 - 0 2776 18399 223 0 1 2080 52 430 42 chain 46933 chr2 243199373 + 81262249 81262857 LTR12_ 688 + 0 688 61278 142 25 2 210 0 103 231 chain 2258 chr2 243199373 + 81262391 81262416 LTR12_ 688 + 167 192 200599 25 chain 243685 chr2 243199373 + 81262883 81265966 HERV9-int 5642 + 5 4812 16579 180 2 1 414 5 4 36 1 0 155 1 0 278 80 0 391 0 11 604 0 1 760 0 1795 48 1 2 127 chain 35787 chr2 243199373 + 81267378 81267935 LTR12_ 688 + 0 688 75155 53 0 41 44 18 2 145 0 3 141 60 30 28 0 133 68 chain 27310 chr2 243199373 + 81371926 81372276 THE1A 353 - 0 352 95245 155 2 0 88 1 0 25 0 1 12 0 4 67 chain 125129 chr2 243199373 + 81372288 81373867 THE1A-int 1579 - 12 1579 29351 157 1 0 4 0 1 487 0 1 419 19 5 190 1 2 301 chain 440372 chr2 243199373 + 81432914 81438996 L1PA7 6471 + 5 6470 9047 126 0 12 19 138 143 61 0 1 36 3 0 9 1 0 61 5 4 95 18 15 26 1 0 41 4 5 83 4 8 4 0 1 58 0 65 44 42 42 289 0 19 126 0 1 192 4 6 290 1 4 404 4 0 198 0 1 26 0 2 110 1 0 36 304 0 643 1 0 244 4 1 14 0 4 49 0 1 38 0 1 542 0 1 1005 2 1 104 21 604 385 5 4 161 chain 14614 chr2 243199373 + 81448700 81448866 L1PA3long 6157 - 0 165 142541 20 1 0 145 chain 59832 chr2 243199373 + 81449689 81450510 L1PA8 5853 + 5042 5853 52913 473 2 0 49 1 0 46 2 0 49 44 42 38 3 2 10 1 0 9 1 0 93 chain 2915 chr2 243199373 + 81463150 81463207 LTR16A 446 + 314 372 226792 29 12 13 16 chain 50242 chr2 243199373 + 81467771 81468413 L1PA6 6164 - 2 636 58836 6 5 0 151 16 14 270 7 6 187 chain 158816 chr2 243199373 + 81496340 81498442 L1PA8 5853 + 3762 5853 23485 238 0 1 38 10 12 164 2 1 73 0 1 719 0 5 133 0 1 81 0 1 11 12 11 122 0 3 96 0 1 90 1 0 46 2 0 14 30 8 46 2 1 61 2 1 19 1 0 44 12 16 33 chain 42809 chr2 243199373 + 81498590 81499069 L1PA4 6152 - 9 488 65642 479 chain 50882 chr2 243199373 + 81531554 81532192 LTR14C 587 - 0 587 58379 59 51 0 528 chain 67535 chr2 243199373 + 81541564 81542290 L1PA2 6032 + 5304 6030 49424 726 chain 125163 chr2 243199373 + 81578220 81579576 L1PA2 6032 - 102 1458 29338 1356 chain 7007 chr2 243199373 + 81579576 81579657 L1PA2 6032 + 5945 6024 177424 74 2 0 5 chain 515251 chr2 243199373 + 81584093 81590224 L1PA6 6164 - 2 6164 5642 957 0 1 710 1 0 496 3 4 298 5 4 428 0 9 65 0 1 863 0 1 591 1 0 198 1 2 107 0 5 359 0 1 38 2 1 209 1 18 286 2 1 98 2 1 410 chain 7804 chr2 243199373 + 81660867 81660966 MER30 238 + 137 233 172287 59 3 0 37 chain 4549 chr2 243199373 + 81663665 81663847 MER5B 177 + 13 176 200226 27 70 41 19 34 44 32 chain 6574 chr2 243199373 + 81667407 81667525 L1PB1 5432 + 5186 5300 180663 34 20 18 42 1 0 16 1 0 4 chain 20673 chr2 243199373 + 81704078 81704354 L1PA8 5853 + 5583 5853 125064 25 2 0 74 1 0 11 1 0 47 2 1 19 2 1 92 chain 29127 chr2 243199373 + 81714322 81714672 L1PA7 6471 + 4630 4985 88422 13 0 1 24 0 4 313 chain 117982 chr2 243199373 + 81714673 81716086 L1PA7 6471 + 4985 6466 31810 227 0 1 120 1 0 288 0 3 76 0 2 429 0 1 161 13 77 81 5 3 12 chain 22306 chr2 243199373 + 81720549 81720905 THE1D 372 - 0 372 118891 28 3 4 94 24 29 9 0 27 106 19 0 18 1 3 54 chain 8060 chr2 243199373 + 81723361 81723451 5S 121 - 31 121 170694 90 chain 12320 chr2 243199373 + 81766508 81766846 MER1B 344 - 7 344 150939 47 25 24 41 4 0 5 4 0 32 102 108 50 8 10 20 chain 101960 chr2 243199373 + 81784342 81785493 L1PA4 6152 - 881 2031 36275 148 0 1 560 1 0 248 1 0 193 chain 73511 chr2 243199373 + 81785493 81786353 L1PA4 6152 + 5281 6143 46330 13 0 1 603 1 0 105 3 0 7 8 12 16 0 1 104 chain 9689 chr2 243199373 + 81790102 81790330 L1PB1 5432 + 5107 5316 162150 8 1 0 23 1 0 6 1 0 14 20 14 14 0 5 26 7 6 13 1 0 43 2 1 14 2 1 5 2 0 8 9 0 8 chain 41217 chr2 243199373 + 81790336 81790861 L1PBa 3878 - 2021 2562 67625 102 1 2 138 5 11 51 0 9 228 chain 64621 chr2 243199373 + 81796373 81797124 L1PA6 6164 - 3 752 50738 8 2 0 741 chain 143930 chr2 243199373 + 81834790 81836329 L1HS 6032 - 3 1542 25492 1539 chain 38473 chr2 243199373 + 81836329 81836736 L1HS 6032 + 4096 4503 71341 407 chain 28955 chr2 243199373 + 81836736 81837041 AluYa5 310 - 5 310 89196 305 chain 116852 chr2 243199373 + 81845094 81846445 L1PA5 6144 + 4779 6123 32179 93 0 3 419 1 0 388 12 3 438 chain 20207 chr2 243199373 + 81864335 81864596 THE1B-int 1605 + 0 262 126509 58 4 5 199 chain 192668 chr2 243199373 + 81865057 81867428 L1PA7 6471 + 4062 6458 19799 110 0 1 83 10 0 378 1 0 196 1 0 20 0 2 10 0 3 90 1 0 294 8 11 205 0 6 143 0 20 76 1 0 172 1 2 14 0 2 365 0 1 192 chain 5874 chr2 243199373 + 81875684 81875756 MER4D1 891 - 693 766 186437 6 0 1 66 chain 28986 chr2 243199373 + 81877091 81877514 LTR10F 562 - 8 549 89063 273 1 0 7 9 141 15 20 3 72 3 7 23 chain 165494 chr2 243199373 + 81879748 81882989 HERVIP10F-int 4088 - 799 3837 22592 12 1 0 15 27 23 15 8 4 18 174 136 60 24 21 435 0 1 9 0 3 73 2 1 5 1 0 9 0 1 124 2 1 16 1 0 73 1 0 84 1 0 65 2 1 14 11 10 269 6 8 80 4 8 31 25 21 32 1 0 62 1 0 19 7 5 63 1 0 29 1 0 24 12 10 7 1 0 14 44 32 137 1 0 41 1 0 14 1 0 23 7 4 24 21 16 13 1 0 8 1 0 11 4 3 38 1 0 30 20 15 18 34 23 20 1 0 9 6 5 23 1 0 5 1 0 53 7 6 8 1 0 32 4 2 4 1 0 41 20 17 23 1 0 7 1 0 15 1 0 17 2 1 12 1 0 10 21 17 34 1 0 22 7 7 19 56 45 16 1 0 13 1 0 9 35 23 29 2 0 7 107 63 8 1 0 20 1 0 12 3 1 7 3 0 15 chain 35957 chr2 243199373 + 81885262 81885791 LTR10F 562 - 8 545 74949 251 0 8 30 1 17 10 17 0 7 1 4 26 0 11 53 20 3 97 0 4 16 chain 12853 chr2 243199373 + 81924319 81924539 L1PA13 3608 + 3273 3486 148831 62 1 0 22 1 0 34 10 5 47 2 0 5 6 9 9 1 0 20 chain 20532 chr2 243199373 + 81937369 81937645 THE1C 375 + 0 277 125537 179 6 4 11 11 14 69 chain 28787 chr2 243199373 + 81937719 81938125 MLT2A1 477 - 54 477 89958 38 0 2 209 8 12 22 0 1 68 17 27 44 chain 210986 chr2 243199373 + 81938125 81940796 HERVL-int 5654 - 0 2660 18432 73 0 3 90 0 3 45 0 5 92 10 13 100 38 6 670 5 8 591 0 4 407 1 0 387 0 1 86 2 1 4 0 1 70 chain 126849 chr2 243199373 + 81952219 81953717 L1PA6 6164 + 4461 5973 28849 168 1 0 106 0 4 151 2 0 402 0 4 16 0 4 189 0 3 70 0 1 89 1 2 107 2 1 55 0 1 139 chain 11906 chr2 243199373 + 81981028 81981198 THE1A-int 1579 - 13 183 152576 54 1 0 69 13 14 33 chain 113164 chr2 243199373 + 81989104 81990416 L1PA4 6152 - 6 1332 33327 138 6 7 70 0 10 537 1 0 76 0 4 484 chain 459112 chr2 243199373 + 82067916 82073157 L1PA4 6152 + 854 6120 8439 20 2 0 169 0 2 360 0 9 819 1 0 4 0 1 354 6 10 96 0 1 380 0 1 180 0 4 1007 4 0 1158 0 1 56 0 10 396 1 0 228 chain 47102 chr2 243199373 + 82095333 82095904 LTR10C 591 + 3 591 61125 168 1 3 175 0 9 146 4 6 16 0 4 61 chain 3347 chr2 243199373 + 82140829 82140869 Tigger3b 1229 - 70 110 218106 40 chain 421471 chr2 243199373 + 82143747 82148615 L1PA5 6144 - 0 4906 9501 662 1 0 1979 1 2 254 0 4 83 0 5 32 1 0 244 0 2 251 8 2 27 0 9 205 0 4 242 0 5 97 4 1 521 0 1 85 1 0 92 26 45 52 chain 15677 chr2 243199373 + 82149166 82149395 THE1D-int 1627 - 41 272 139346 101 15 16 55 1 2 57 chain 176078 chr2 243199373 + 82150539 82153245 L1PBa 3878 + 1276 3649 21347 297 0 1 342 5 6 46 0 1 704 28 26 11 13 5 90 0 2 25 322 8 204 12 0 6 1 0 13 12 14 132 1 0 4 0 1 7 3 0 375 1 0 4 11 12 37 chain 28218 chr2 243199373 + 82156307 82156606 AluYb8 318 + 19 318 92241 299 chain 519658 chr2 243199373 + 82172020 82178774 L1PA7 6471 - 5 6457 5193 126 23 35 58 0 1 9 0 2 6 0 13 349 5 8 100 329 0 54 2 3 40 0 1 29 5 8 952 0 4 172 0 1 443 1 0 4 5 6 34 3 0 82 0 1 288 0 1 150 14 6 243 0 4 71 1 0 4 0 1 57 0 4 394 1 0 65 34 0 131 0 6 19 0 1 107 1 8 762 0 2 389 0 4 164 8 9 808 0 1 212 chain 64210 chr2 243199373 + 82181095 82181987 L1PA8A 6298 + 5413 6290 50910 76 2 1 10 6 5 58 4 7 197 2 0 132 1 0 36 20 5 229 11 12 65 2 3 41 chain 29983 chr2 243199373 + 82232763 82233199 LTR7 482 + 6 475 84861 95 15 14 109 0 1 31 8 39 12 0 1 111 15 16 40 chain 49889 chr2 243199373 + 82249784 82250367 LTR14C 587 + 0 587 59095 317 3 1 199 0 6 64 chain 5273 chr2 243199373 + 82256933 82257167 HERVK14C-int 762 + 563 718 192294 5 2 0 44 142 67 8 1 0 10 1 0 21 chain 48240 chr2 243199373 + 82257821 82258403 LTR14C 587 + 0 587 60283 82 0 5 500 chain 41217 chr2 243199373 + 82258403 82258945 THE1B-int 1605 - 1035 1605 67629 116 1 26 83 4 7 338 chain 121690 chr2 243199373 + 82273276 82274956 L1PA8 5853 + 4177 5853 30484 157 2 0 36 9 8 203 0 2 180 3 2 65 7 8 6 0 1 21 0 1 139 4 0 3 1 0 24 14 18 51 4 7 455 1 0 44 2 0 70 2 1 10 6 0 7 0 5 39 2 1 19 2 1 92 chain 10612 chr2 243199373 + 82277364 82277484 L1PA4 6152 - 254 374 157764 120 chain 12568 chr2 243199373 + 82304190 82304473 MER1B 344 - 0 281 149977 28 58 54 60 45 47 92 chain 7064 chr2 243199373 + 82339859 82339953 LTR1B 797 + 629 720 176991 79 3 0 12 chain 28563 chr2 243199373 + 82340466 82340765 AluYa5 310 - 0 299 90905 299 chain 2975 chr2 243199373 + 82346284 82346316 MIR 256 + 168 200 225517 32 chain 42839 chr2 243199373 + 82356591 82357139 MER41A 554 + 0 554 65606 280 5 10 52 0 1 211 chain 44562 chr2 243199373 + 82359207 82359761 MER41A 554 + 0 554 63512 554 chain 22047 chr2 243199373 + 82448102 82448372 AluSp 311 + 17 286 120030 115 1 0 154 chain 41851 chr2 243199373 + 82468126 82468619 L1PA5 6144 - 3636 4135 66825 187 7 12 184 1 2 114 chain 311859 chr2 243199373 + 82468621 82472261 L1PA5 6144 + 2512 6144 12928 486 0 1 67 0 1 97 1 0 1116 0 2 336 1 0 404 19 8 282 1 2 381 1 0 115 1 2 332 chain 4827 chr2 243199373 + 82487604 82487670 MER83B-int 1116 - 714 778 197052 57 2 0 7 chain 31337 chr2 243199373 + 82502327 82502885 L1PREC2 3366 - 2684 3230 81917 211 2 1 70 2 0 75 8 10 23 2 1 23 0 2 7 90 79 10 1 0 34 chain 6094 chr2 243199373 + 82530441 82530548 L1PA16 3655 + 3486 3578 184469 48 26 11 33 chain 6480 chr2 243199373 + 82535858 82536244 L1MA9 1812 + 1261 1617 181388 52 253 227 26 9 7 7 1 0 19 1 0 18 chain 2971 chr2 243199373 + 82546687 82546720 MLT1D 503 + 411 444 225657 33 chain 6941 chr2 243199373 + 82552338 82552413 LTR12C 1709 - 0 75 177886 75 chain 114336 chr2 243199373 + 82552413 82553883 LTR12C 1709 - 0 1709 32986 84 6 5 297 0 2 93 11 4 106 7 164 117 1 0 262 4 1 60 13 50 83 0 43 40 8 13 8 4 0 186 0 11 80 chain 100375 chr2 243199373 + 82581021 82582657 L1PA8A 6298 - 8 1323 36663 616 316 2 99 2 3 80 2 1 101 0 1 19 0 1 76 40 31 285 chain 42552 chr2 243199373 + 82594329 82594819 L1PA5 6144 - 5 495 65961 490 chain 8884 chr2 243199373 + 82594820 82594916 L1P1 4361 + 2354 2450 166212 96 chain 18718 chr2 243199373 + 82614880 82615199 L1MA2 4263 + 3803 4114 130905 10 0 2 143 1 0 8 34 33 59 19 12 35 1 0 9 chain 32056 chr2 243199373 + 82625398 82625809 LTR7 482 - 0 482 80766 185 0 31 7 0 1 33 0 1 109 8 46 69 chain 35348 chr2 243199373 + 82630033 82630577 LTR12D 1347 + 7 1347 75735 48 29 411 36 7 215 103 2 1 201 27 0 16 0 234 75 chain 60630 chr2 243199373 + 82679910 82680683 L1PA8A 6298 - 7 781 52503 63 3 4 39 1 0 224 0 1 443 chain 26341 chr2 243199373 + 82694180 82694472 AluYf4 310 + 0 292 98651 292 chain 25093 chr2 243199373 + 82699689 82699980 AluY 311 + 0 297 104332 65 0 5 62 0 1 164 chain 27064 chr2 243199373 + 82718654 82719024 LOR1b 457 - 0 410 96060 228 8 47 5 0 3 31 2 0 96 chain 12567 chr2 243199373 + 82728375 82728529 THE1B 368 + 214 368 149983 154 chain 166487 chr2 243199373 + 82741919 82743790 L1PA4 6152 - 9 1882 22461 486 2 0 363 2 0 65 0 1 4 1 0 583 0 5 29 0 1 336 chain 80502 chr2 243199373 + 82743790 82744694 L1PA4 6152 + 3362 4266 43313 904 chain 2888 chr2 243199373 + 82765485 82765888 LTR16A1 462 - 0 395 227242 27 270 270 13 53 52 13 7 0 20 chain 44174 chr2 243199373 + 82767666 82768219 MER41A 554 - 0 554 63976 461 0 1 92 chain 3108 chr2 243199373 + 82771367 82771405 Tigger5 388 + 327 365 222780 38 chain 59704 chr2 243199373 + 82789552 82790205 L1PA3long 6157 + 5504 6157 52991 653 chain 82648 chr2 243199373 + 82796548 82797576 MER11B 1079 + 7 1063 42485 523 5 41 170 10 0 29 0 2 100 0 1 177 1 0 13 chain 15210 chr2 243199373 + 82849296 82849477 LTR12D 1347 + 404 674 140749 18 0 17 56 0 72 107 chain 45776 chr2 243199373 + 82874131 82874770 L1PA11 4918 + 3862 4488 62251 287 8 7 176 5 0 57 7 6 12 3 0 7 1 0 58 2 0 16 chain 110741 chr2 243199373 + 82903042 82904366 L1PA7 6471 + 5139 6461 34016 47 0 1 107 3 4 321 1 0 377 8 5 460 chain 8159 chr2 243199373 + 82920552 82920648 L1P2 5180 + 1924 2020 170176 96 chain 38377 chr2 243199373 + 82941870 82942304 L1PA5 6144 + 5707 6141 71602 434 chain 85555 chr2 243199373 + 82948909 82949893 L1PA5 6144 - 423 1403 41322 351 4 3 47 8 5 574 chain 16147 chr2 243199373 + 82949893 82950081 L1PA5 6144 + 5729 5918 137665 81 0 1 107 chain 24809 chr2 243199373 + 82965259 82965555 AluSc 308 + 3 299 105840 296 chain 8178 chr2 243199373 + 82976984 82977093 L1PA10 4194 + 1162 1282 170082 24 4 15 81 chain 41195 chr2 243199373 + 82990773 82991327 MER41A 554 + 0 554 67649 85 10 0 200 0 1 195 26 35 38 chain 3959 chr2 243199373 + 83025698 83025754 MSTA 426 - 0 52 207994 10 4 0 42 chain 48708 chr2 243199373 + 83026581 83027211 PABL_A 660 - 9 660 59947 358 14 18 43 4 5 137 0 9 62 0 7 12 chain 3935 chr2 243199373 + 83038781 83038824 U2 167 + 7 50 208329 43 chain 47508 chr2 243199373 + 83066847 83067364 L1HS 6032 - 857 1374 60435 517 chain 80497 chr2 243199373 + 83067364 83068230 L1HS 6032 + 5166 6032 43391 866 chain 39827 chr2 243199373 + 83077976 83078589 Charlie3 2679 - 34 598 69584 28 2 4 10 3 0 6 0 3 5 3 0 34 75 26 145 0 1 302 chain 4922 chr2 243199373 + 83080529 83080676 Charlie3 2679 - 2208 2276 196030 31 80 1 36 chain 21292 chr2 243199373 + 83097441 83097677 L1PA5 6144 + 5903 6139 122893 236 chain 50616 chr2 243199373 + 83110504 83111168 L1PA8 5853 + 5194 5853 58566 370 1 0 44 2 0 50 0 1 42 1 0 28 13 12 19 2 1 92 chain 5855 chr2 243199373 + 83139032 83139106 MER57B2 428 + 52 126 186644 74 chain 4376 chr2 243199373 + 83141693 83141740 Tigger2b_Pri 1066 + 842 889 202251 47 chain 36682 chr2 243199373 + 83149913 83150323 L1PA5 6144 - 12 422 73983 410 chain 13454 chr2 243199373 + 83150323 83150472 L1PA5 6144 + 5526 5675 146508 149 chain 127992 chr2 243199373 + 83164622 83166133 LTR12C 1709 - 0 1709 28569 481 0 4 107 2 0 6 1 0 74 0 200 283 1 0 86 7 4 163 0 1 300 chain 492469 chr2 243199373 + 83171406 83178104 L1PA7 6471 - 21 6468 7247 127 35 36 153 1 0 517 6 8 87 0 7 173 8 0 266 20 10 171 0 1 77 6 10 227 0 1 5 14 13 33 0 1 39 0 1 223 324 0 983 10 7 171 0 2 386 7 3 71 4 0 462 0 1 151 1 0 14 0 1 27 0 1 23 15 39 42 6 7 586 1 0 6 9 10 24 3 7 183 16 15 111 0 1 70 0 6 68 0 4 61 23 43 22 0 1 243 0 1 24 1 0 125 0 6 6 6 17 59 1 6 81 0 1 6 1 0 23 13 26 8 13 0 20 chain 42847 chr2 243199373 + 83194197 83194750 LTR12F 595 - 0 595 65594 380 5 47 24 3 1 39 0 1 77 0 1 25 chain 22566 chr2 243199373 + 83202633 83202908 AluSp 311 - 18 291 117733 165 2 0 108 chain 3116 chr2 243199373 + 83219689 83219723 MER81 114 + 36 70 222616 34 chain 52568 chr2 243199373 + 83260023 83261063 L1PB1 5432 - 10 867 57255 13 6 5 12 1 0 21 1 0 14 13 11 14 9 6 45 1 0 44 33 31 38 2 0 9 2 0 3 2 0 12 1 0 6 1 0 20 181 21 78 0 6 7 6 0 142 2 0 51 0 1 9 1 0 5 0 2 166 4 0 65 chain 19743 chr2 243199373 + 83278991 83279471 LTR4 552 + 14 519 127974 12 2 0 37 0 1 4 23 19 16 118 154 18 1 0 4 14 17 97 21 13 113 chain 554057 chr2 243199373 + 83315928 83321955 L1PA2 6032 + 0 6030 941 76 0 1 179 1 0 270 4 0 184 1 8 169 0 1 2161 1 0 466 1 0 1888 0 1 626 chain 31345 chr2 243199373 + 83327473 83327889 L1PA8 5853 + 5443 5853 81904 121 1 0 43 3 1 71 1 0 8 0 6 6 6 0 41 2 1 22 1 0 90 chain 59587 chr2 243199373 + 83328515 83329287 LTR17 781 + 0 773 53059 119 0 9 171 10 0 30 0 2 95 0 28 13 28 0 306 chain 44648 chr2 243199373 + 83336859 83337372 MER9a1 513 - 0 513 63432 513 chain 3227 chr2 243199373 + 83367538 83367704 L1MCb 1641 + 828 994 220471 16 64 67 12 7 0 10 23 27 34 chain 170334 chr2 243199373 + 83387286 83389840 HERVL-int 5654 - 10 2315 22008 14 5 6 43 306 2 45 15 16 72 4 12 61 1 0 58 4 5 80 8 5 108 0 20 357 7 2 72 0 1 173 0 1 44 0 5 340 1 2 137 36 49 11 3 0 477 5 20 67 chain 44417 chr2 243199373 + 83404154 83404945 LTR12_ 688 - 0 688 63676 125 0 8 49 25 25 39 43 13 15 1 0 41 102 0 119 12 9 41 0 24 148 0 1 31 chain 41142 chr2 243199373 + 83406946 83407477 L1PA8 5853 - 0 528 67727 92 2 1 19 2 1 48 1 0 13 2 1 69 2 0 26 0 4 15 1 0 239 chain 101303 chr2 243199373 + 83407984 83409355 LTR12C 1709 + 0 1709 36442 290 5 6 42 0 43 31 0 1 5 4 3 229 0 278 143 0 47 89 24 0 17 13 6 47 8 9 339 1 0 84 chain 13394 chr2 243199373 + 83410980 83411127 L1PA4 6152 + 5996 6143 146742 147 chain 23555 chr2 243199373 + 83426144 83426428 L1PA5 6144 - 15 299 112822 132 2 1 6 0 1 144 chain 16182 chr2 243199373 + 83426428 83426609 L1P1 4361 + 2509 2690 137810 181 chain 17854 chr2 243199373 + 83432341 83432661 THE1C 375 - 28 361 133227 84 78 90 122 8 9 28 chain 10604 chr2 243199373 + 83444619 83445031 MER30B 195 + 5 187 157807 40 3 0 24 255 25 59 0 3 31 chain 43915 chr2 243199373 + 83470522 83471019 L1PA5 6144 - 477 977 64316 364 0 3 133 chain 40580 chr2 243199373 + 83471019 83471485 L1PA5 6144 + 5677 6142 68469 320 1 0 145 chain 98379 chr2 243199373 + 83472345 83473613 LTR12C 1709 - 0 1708 37198 51 6 11 136 0 106 177 0 4 94 11 175 96 0 120 251 1 2 9 7 4 92 0 43 337 chain 52463 chr2 243199373 + 83510123 83510860 MER4E 760 + 0 753 57318 24 10 8 117 24 27 193 1 3 53 8 7 247 0 13 41 0 1 19 chain 45013 chr2 243199373 + 83544882 83545376 L1PA3long 6157 + 5662 6157 63042 177 0 1 317 chain 542023 chr2 243199373 + 83574599 83580613 L1PA3long 6157 + 0 6156 2499 152 0 1 628 0 128 27 0 1 109 1 0 519 0 2 1699 0 2 516 0 1 1519 0 4 168 0 3 504 1 2 171 chain 7096 chr2 243199373 + 83627692 83627805 L1MA4 2864 + 2541 2692 176785 51 4 45 38 3 0 17 chain 153698 chr2 243199373 + 83628848 83631136 L1PB1 5432 + 3188 5409 24126 298 6 5 200 4 9 24 34 13 459 1 2 230 1 0 6 0 1 189 5 2 20 0 1 56 0 2 70 50 47 34 8 0 77 2 0 57 4 0 71 1 2 5 1 0 33 1 4 9 3 0 21 1 0 12 1 0 9 2 0 3 2 0 9 7 5 47 2 1 15 1 0 43 74 55 12 2 0 24 1 0 21 1 0 13 1 0 5 chain 23539 chr2 243199373 + 83634378 83634754 MLT2A1 477 + 0 384 112914 54 0 4 59 1 0 4 0 1 4 7 9 5 0 1 21 7 11 22 27 25 104 1 0 60 chain 4410 chr2 243199373 + 83702686 83702980 L1MB5 1630 - 56 348 201798 25 227 225 42 chain 207440 chr2 243199373 + 83715045 83717366 L1PA4 6152 + 3818 6151 18687 122 0 1 187 1 0 386 0 17 466 2 0 13 2 0 675 2 0 318 0 1 147 chain 22273 chr2 243199373 + 83718855 83719134 AluY 311 + 0 294 119018 47 1 17 59 1 0 171 chain 11591 chr2 243199373 + 83722184 83722320 L1PA5 6144 - 356 491 153927 77 1 0 58 chain 31467 chr2 243199373 + 83722330 83722692 L1PA5 6144 + 5770 6132 81699 362 chain 136386 chr2 243199373 + 83723476 83725055 L1PA5 6144 - 12 1582 26768 90 1 0 366 2 0 375 0 4 294 2 0 144 9 0 105 0 1 191 chain 32027 chr2 243199373 + 83745139 83745549 LTR12E 1234 + 17 428 80824 96 0 2 158 20 19 136 chain 26043 chr2 243199373 + 83745556 83745842 AluYc 301 - 13 301 99849 172 0 2 114 chain 15461 chr2 243199373 + 83778787 83779108 MER61D 487 + 0 391 140017 44 24 46 51 5 65 26 8 7 35 40 32 26 2 0 7 1 0 52 chain 58156 chr2 243199373 + 83780554 83781284 L1PA10 4194 - 33 758 53899 11 1 0 33 3 0 31 5 4 646 chain 23681 chr2 243199373 + 83804938 83805211 L1PA5 6144 - 3 276 112146 273 chain 36867 chr2 243199373 + 83826604 83827070 LTR12F 595 - 40 595 73703 316 4 92 40 0 1 106 chain 36979 chr2 243199373 + 83836233 83836690 L1PA7 6471 - 1102 1577 72872 106 7 25 344 chain 79213 chr2 243199373 + 83836690 83837717 L1PA7 6471 + 5430 6469 43940 194 20 25 206 0 1 233 2 1 69 0 1 146 14 19 132 0 1 11 chain 21399 chr2 243199373 + 83844040 83844314 L1PA8 5853 - 0 269 122514 93 1 0 19 2 1 52 1 0 80 2 0 24 chain 5929 chr2 243199373 + 83884870 83884940 U6 107 + 8 78 185894 70 chain 3026 chr2 243199373 + 83908942 83908976 MER2 342 - 133 167 224443 34 chain 39979 chr2 243199373 + 83953531 83954197 L1MA1 4479 - 289 933 69346 16 45 37 30 2 0 29 1 0 84 25 26 16 3 0 6 7 6 15 1 0 80 2 0 19 1 0 56 1 0 15 1 0 16 2 0 25 1 0 117 0 1 50 chain 34369 chr2 243199373 + 83965401 83965831 L1PA7 6471 - 364 797 77106 6 0 2 301 0 1 123 chain 49787 chr2 243199373 + 83975959 83976632 LTR12C 1709 + 704 1709 59170 48 0 366 99 42 11 69 11 9 319 1 0 84 chain 28575 chr2 243199373 + 83990129 83990483 LOR1a 498 - 144 498 90842 354 chain 32745 chr2 243199373 + 83993234 83993658 L1PA10 4194 - 51 470 79622 27 3 0 34 1 0 330 1 0 28 chain 134765 chr2 243199373 + 83993664 83995423 L1PA10 4194 + 1915 3693 27063 220 2 0 91 0 4 109 0 1 266 17 18 132 0 9 204 34 35 120 1 0 309 5 8 5 1 0 28 1 4 134 0 1 80 chain 423735 chr2 243199373 + 83995426 84000000 L1HS 6032 + 0 4574 9451 4574 chain 132923 chr2 243199373 + 84000000 84001441 L1PA2 6032 + 4574 6015 27438 1441 chain 29503 chr2 243199373 + 84016070 84016481 LTR7 482 - 0 482 86626 174 0 1 27 1 0 16 8 40 109 9 47 33 3 4 31 chain 271540 chr2 243199373 + 84017727 84021194 HERVH-int 3825 - 0 3825 15111 67 1 4 154 0 2 228 40 250 39 16 18 95 0 1 1023 0 1 227 4 31 203 109 101 116 0 2 37 15 0 266 0 3 121 0 3 49 0 5 13 0 2 53 0 20 15 1 21 17 23 0 7 3 0 13 1 0 14 4 112 159 1 0 333 chain 32646 chr2 243199373 + 84046347 84046787 MLT2A1 477 + 0 477 79766 142 0 1 26 5 9 22 1 4 120 1 0 59 17 43 4 0 1 5 0 3 38 chain 21327 chr2 243199373 + 84049017 84049532 L1PA13 3608 - 3040 3518 122767 30 51 41 16 1 0 18 6 2 16 2 0 17 1 0 14 6 8 115 10 9 64 100 82 23 6 4 19 chain 26131 chr2 243199373 + 84061287 84061709 LTR7B 505 + 0 495 99477 106 1 11 67 35 11 17 15 103 47 1 0 79 14 13 20 0 1 20 chain 62410 chr2 243199373 + 84062174 84062954 LTR17 781 - 0 781 51719 12 0 1 22 0 1 264 6 15 74 1 0 64 0 1 21 9 0 145 1 0 161 chain 41630 chr2 243199373 + 84066311 84066766 L1PA2 6032 - 3 458 67117 455 chain 51163 chr2 243199373 + 84066766 84067320 L1PA2 6032 + 5033 5587 58209 554 chain 111221 chr2 243199373 + 84075575 84076922 L1PA8 5853 - 0 1341 33881 93 1 0 19 2 1 44 7 6 11 2 1 70 2 0 12 0 1 31 1 0 347 9 8 200 2 0 263 0 3 231 chain 27736 chr2 243199373 + 84078990 84079396 L1PA8 5853 + 5454 5853 93917 110 2 1 43 2 0 72 1 0 8 24 23 29 2 1 19 1 0 93 chain 20215 chr2 243199373 + 84082528 84082749 L1PA2 6032 - 2 224 126482 148 0 1 73 chain 41675 chr2 243199373 + 84101056 84101532 HERV-Fc1_LTR3 475 - 0 475 67063 267 1 0 208 chain 404851 chr2 243199373 + 84101532 84106134 HERV-Fc1-int 4575 - 0 4567 9952 92 0 1 181 1 0 54 1 3 310 0 1 81 3 0 51 0 5 773 0 1 160 44 0 1498 4 5 71 0 12 290 5 1 98 3 0 215 1 0 254 0 1 126 3 1 255 1 0 27 chain 41091 chr2 243199373 + 84106142 84106618 HERV-Fc1_LTR3 475 - 0 475 67776 270 1 0 205 chain 8738 chr2 243199373 + 84106632 84106766 MER76 683 + 547 683 166988 40 18 20 76 chain 12640 chr2 243199373 + 84112907 84113186 L1PB1 5432 - 10 264 149682 18 1 0 11 29 27 20 2 0 15 1 0 4 2 0 19 32 19 9 1 0 43 1 0 16 3 1 52 chain 22320 chr2 243199373 + 84124008 84124265 AluY 311 + 35 293 118822 97 0 1 160 chain 5030 chr2 243199373 + 84134148 84134239 L1MA4A 3247 - 171 258 194830 20 4 1 29 6 5 32 chain 42915 chr2 243199373 + 84141745 84142205 L1PA2 6032 + 5572 6032 65518 460 chain 13032 chr2 243199373 + 84157206 84157514 L1PB1 5432 - 10 289 148116 18 1 0 12 1 0 20 5 4 18 29 24 18 42 29 43 1 0 17 1 0 49 4 2 9 5 1 15 chain 8311 chr2 243199373 + 84167954 84168056 MER85 139 - 30 134 169329 11 0 2 91 chain 23331 chr2 243199373 + 84180389 84180682 AluY 311 + 11 299 114017 112 6 4 37 3 0 135 chain 30467 chr2 243199373 + 84184917 84185234 AluYb8 318 - 1 318 83499 317 chain 53349 chr2 243199373 + 84191614 84192244 L1PA6 6164 + 5527 6162 56806 305 1 0 178 0 1 77 0 7 59 2 0 8 chain 34560 chr2 243199373 + 84193887 84194262 L1PA2 6032 - 0 375 76811 375 chain 12201 chr2 243199373 + 84201974 84202130 L1PA8 5853 + 5699 5853 151422 41 2 1 19 1 0 93 chain 544038 chr2 243199373 + 84203524 84209666 L1PA4 6152 + 6 6152 2204 744 1 0 198 4 0 505 0 4 258 0 1 1494 1 0 29 0 1 2057 0 4 851 chain 55327 chr2 243199373 + 84229239 84229903 L1PA7 6471 - 2 674 55505 15 0 7 603 4 5 42 chain 22420 chr2 243199373 + 84230131 84230397 AluY 311 + 30 297 118372 102 0 1 164 chain 21327 chr2 243199373 + 84232536 84232758 AluYb9 318 + 83 305 122766 222 chain 5865 chr2 243199373 + 84297930 84298014 L1PA16 3655 + 3507 3592 186549 10 0 4 55 4 1 15 chain 19914 chr2 243199373 + 84320828 84321131 THE1B 368 - 12 368 127420 63 2 1 52 4 45 29 1 0 111 5 20 17 5 4 14 chain 54454 chr2 243199373 + 84330925 84331607 L1P1 4361 - 3675 4357 56069 115 1 0 193 18 19 355 chain 485991 chr2 243199373 + 84331781 84337316 L1PA4 6152 + 661 6151 7522 174 17 0 306 1 2 881 30 0 1146 0 1 2980 chain 54773 chr2 243199373 + 84354904 84355600 LTR12 884 + 0 869 55859 202 1 136 20 0 22 73 0 15 69 0 2 262 1 0 68 chain 23809 chr2 243199373 + 84357570 84357859 AluY 311 + 8 300 111419 251 0 1 20 0 2 18 chain 123022 chr2 243199373 + 84395211 84396787 THE1B-int 1605 + 0 1600 30039 432 7 32 317 0 2 5 8 6 514 4 3 289 chain 24923 chr2 243199373 + 84396797 84397143 THE1B 368 + 5 368 105201 12 2 4 23 0 15 116 1 0 19 1 3 120 1 0 51 chain 27700 chr2 243199373 + 84426434 84426927 L1PA15 4387 - 38 511 94043 20 5 0 14 3 1 39 11 8 51 1 0 8 4 0 21 1 0 12 4 5 39 1 0 22 10 9 167 13 12 28 4 2 15 chain 39299 chr2 243199373 + 84435783 84436323 MLT2A2 560 + 0 560 70327 160 30 32 214 0 11 67 6 9 55 0 4 8 chain 2864 chr2 243199373 + 84437778 84437814 MIR 256 + 88 126 227605 26 0 2 10 chain 552403 chr2 243199373 + 84451868 84458031 L1PA3long 6157 + 4 6157 1144 2209 4 0 2079 12 0 352 0 5 199 0 1 168 3 1 679 0 2 458 chain 7719 chr2 243199373 + 84472906 84472995 L1PA5 6144 + 6055 6144 172800 89 chain 20826 chr2 243199373 + 84488383 84488606 AluYf4 310 + 69 292 124518 223 chain 528934 chr2 243199373 + 84489503 84495626 L1PA5 6144 + 3 6144 4310 1405 1 6 54 0 1 4 1 0 100 12 12 66 0 1 141 0 4 894 0 1 230 0 1 268 5 6 421 2 0 423 0 1 298 0 4 1637 7 9 154 chain 11700 chr2 243199373 + 84495683 84495988 L1MA5A 2387 + 2102 2359 153473 5 1 0 35 0 1 14 2 0 27 1 0 14 61 32 13 0 1 52 1 0 10 50 34 19 chain 2423 chr2 243199373 + 84539087 84539179 MER57B2 428 + 245 357 234030 12 1 22 17 42 41 20 chain 7573 chr2 243199373 + 84546468 84546551 L1PA3long 6157 + 6074 6157 173711 83 chain 5219 chr2 243199373 + 84561746 84561825 L1PB1 5432 + 5347 5422 192833 23 1 0 22 1 0 12 1 0 14 1 0 4 chain 136833 chr2 243199373 + 84561846 84564153 L1MA2 4263 + 2055 4058 26673 179 10 5 90 2 1 111 8 12 103 0 4 84 5 3 259 5 8 62 0 1 131 0 7 129 3 1 5 0 2 11 0 1 58 6 7 4 1 0 20 10 11 202 1 0 7 0 1 5 5 7 76 1 0 16 9 12 12 308 0 62 41 37 4 0 1 150 2 1 9 1 0 73 8 0 19 chain 21212 chr2 243199373 + 84566351 84566591 L1PA4 6152 + 5902 6143 123168 155 0 1 85 chain 456206 chr2 243199373 + 84568877 84575294 L1PA8A 6298 - 10 6069 8535 39 10 9 6 1 0 86 6 8 139 6 5 267 4 7 148 1 4 74 1 7 136 0 1 15 4 7 16 0 1 4 1 0 150 8 7 5 0 1 58 0 1 154 0 1 105 23 3 100 0 1 243 0 2 436 6 7 155 1 2 77 2 1 112 356 2 241 0 4 51 0 6 20 1 0 89 0 2 5 0 2 71 6 10 237 0 1 44 0 3 11 0 1 14 1 2 113 16 20 229 14 0 79 8 0 152 0 1 188 2 5 499 19 22 443 0 12 69 1 0 215 1 2 277 18 20 15 1 0 76 12 9 13 7 5 78 14 0 14 4 0 6 1 3 41 2 0 9 5 0 14 1 0 8 1 0 6 chain 25325 chr2 243199373 + 84571476 84571825 THE1A 353 + 0 353 103095 14 1 7 59 6 5 22 7 6 240 chain 495330 chr2 243199373 + 84580769 84587092 L1PA7 6471 + 0 6465 7108 41 0 1 11 10 13 346 3 0 66 0 1 98 3 0 165 0 5 128 0 1 214 13 4 158 17 36 91 9 8 48 0 1 457 1 4 312 0 1 112 5 8 310 6 7 258 1 0 24 8 122 177 0 1 87 0 1 5 1 0 175 1 0 52 0 4 446 21 11 8 0 1 8 0 5 453 1 2 468 2 0 259 1 0 6 0 1 401 0 2 77 4 5 430 0 2 106 1 0 61 10 12 6 0 1 141 chain 93664 chr2 243199373 + 84589947 84594410 L1PREC2 3366 + 139 3006 38453 31 1 0 10 2 0 17 28 22 13 1 0 12 2 1 12 6 4 29 1 0 14 0 7 90 2 0 69 2 1 72 2784 1200 82 0 11 6 1 2 170 6 7 211 0 4 21 0 1 188 0 1 133 0 4 39 1 0 4 17 20 66 4 0 39 2 0 34 210 189 31 chain 264752 chr2 243199373 + 84596473 84599406 L1PA3long 6157 - 10 3018 15454 354 16 83 396 0 4 952 0 4 1215 chain 5407 chr2 243199373 + 84601132 84601206 MADE1 96 - 4 94 190918 41 1 17 32 chain 10952 chr2 243199373 + 84601511 84601830 MLT1B 390 + 0 289 156393 24 13 7 56 23 29 49 75 72 19 26 0 13 1 0 20 chain 156291 chr2 243199373 + 84610899 84612894 L1PA11 4918 - 541 2541 23823 150 4 1 246 0 1 144 0 1 168 0 1 129 1 0 81 14 0 266 0 27 416 9 10 21 5 0 100 5 3 72 2 0 87 4 5 71 chain 4198 chr2 243199373 + 84615600 84615653 MLT1C 463 + 35 88 204578 53 chain 11855 chr2 243199373 + 84618735 84618969 MER21B 843 - 41 269 152816 36 68 64 109 2 0 19 chain 9588 chr2 243199373 + 84625414 84625536 L1PA7 6471 + 2020 2142 162645 122 chain 40896 chr2 243199373 + 84625536 84626027 L1PA7 6471 + 2143 2633 68033 165 1 0 325 chain 307942 chr2 243199373 + 84626031 84630130 L1PA7 6471 + 2638 6465 13088 255 0 1 703 9 8 26 0 3 83 0 1 203 1 2 288 0 2 351 324 29 856 0 1 57 0 3 87 0 1 16 0 2 87 0 1 81 8 10 515 4 6 117 0 8 17 4 0 7 chain 8787 chr2 243199373 + 84635506 84635672 MER30 238 - 1 192 166729 17 3 1 29 3 0 13 4 24 15 2 0 6 10 22 64 chain 31977 chr2 243199373 + 84665812 84666287 LTR12F 595 + 4 595 80892 99 0 1 42 2 0 12 25 0 19 10 62 10 0 24 14 7 70 186 0 3 49 chain 89836 chr2 243199373 + 84671365 84672440 MER11C 1089 - 16 1089 39713 281 8 0 60 0 1 138 31 30 102 0 6 455 chain 20662 chr2 243199373 + 84682384 84682626 AluSp 311 + 48 290 125096 242 chain 25131 chr2 243199373 + 84682693 84682982 AluY 311 + 16 305 104117 289 chain 54464 chr2 243199373 + 84687888 84688536 PABL_A 660 + 0 660 56057 41 0 1 42 0 9 416 0 2 149 chain 45892 chr2 243199373 + 84691530 84692084 MER41A 554 - 0 554 62138 554 chain 101983 chr2 243199373 + 84692644 84694138 MER41-int 2638 - 241 1766 36269 60 8 14 54 6 1 207 0 44 100 8 6 36 4 3 128 34 7 12 8 11 222 0 4 107 0 1 53 0 1 16 5 0 6 1 7 6 0 5 19 8 13 67 1 3 7 1 0 196 9 6 46 2 0 57 chain 119820 chr2 243199373 + 84702280 84703954 HERVK14-int 1672 - 7 1671 31115 6 1 0 140 1 0 9 2 0 26 10 9 16 8 11 32 1 0 19 8 9 4 1 0 34 3 6 36 1 0 51 1 0 4 0 1 144 5 4 31 3 1 8 1 0 3 1 0 79 1 0 158 6 5 133 13 15 46 0 4 8 6 5 41 2 1 232 2 0 23 12 11 212 11 10 38 1 0 10 1 0 29 chain 9432 chr2 243199373 + 84715407 84715515 L1PA2 6032 + 5926 6032 163393 101 2 0 5 chain 538231 chr2 243199373 + 84732685 84738824 L1PA4 6152 - 1 6131 3116 95 0 1 529 8 0 206 1 0 301 0 1 20 0 1 301 0 1 1529 1 2 279 1 0 177 14 14 248 10 0 58 0 4 1120 0 1 702 0 1 539 chain 29777 chr2 243199373 + 84784488 84784808 AluYb8 318 + 0 316 85551 126 4 0 190 chain 63577 chr2 243199373 + 84787585 84788281 L1PA3long 6157 - 0 695 51201 677 1 0 18 chain 61925 chr2 243199373 + 84788281 84788969 L1PA3long 6157 + 4765 5450 51933 324 1 0 83 2 0 278 chain 15794 chr2 243199373 + 84789997 84790359 THE1B 368 + 0 368 138968 11 9 10 32 19 20 40 0 1 55 1 0 11 44 50 11 1 0 65 49 48 14 chain 7143 chr2 243199373 + 84794397 84794494 L1PA10 4194 + 4057 4150 176456 19 1 0 40 3 0 34 chain 56599 chr2 243199373 + 84797363 84798181 LTR12 884 + 0 883 54783 25 1 0 51 91 0 243 0 25 24 11 9 159 0 1 101 0 133 112 chain 24434 chr2 243199373 + 84802733 84803016 AluY 311 + 7 291 107886 119 0 1 164 chain 3163 chr2 243199373 + 84812843 84812883 MER52C 1267 - 278 317 221698 11 1 0 28 chain 174754 chr2 243199373 + 84841173 84843738 L1PB1 5432 - 9 3882 21501 9 1 0 10 14 12 22 1 0 24 24 21 13 43 24 7 1 0 45 1 0 15 2 1 51 19 13 12 1 0 6 1 0 13 1 0 11 2 1 94 4 5 81 7 6 121 2 9 88 1 4 77 3 0 19 10 14 116 0 4 28 1 2 11 23 0 8 0 1 120 0 5 308 1 0 31 1 0 143 0 2 80 0 5 14 19 0 153 0 1364 163 5 7 92 1 5 119 8 0 264 chain 22324 chr2 243199373 + 84853722 84854029 AluSg7 307 - 3 307 118806 5 3 0 47 1 6 119 0 1 10 8 7 26 5 0 83 chain 16740 chr2 243199373 + 84872558 84872815 L1PA11 4918 - 423 669 136281 7 1 0 13 3 1 67 2 0 13 9 7 53 4 0 85 chain 523630 chr2 243199373 + 84889273 84895374 L1PA5 6144 + 0 6144 4800 134 8 34 485 1 0 158 0 17 341 9 0 60 2 0 673 1 0 411 2 1 130 0 2 730 1 0 497 1 0 813 0 4 373 0 2 117 1 0 312 2 0 164 4 15 174 0 1 255 1 0 241 chain 30056 chr2 243199373 + 84900618 84901088 MLT2A1 477 - 0 477 84636 42 4 0 7 7 43 165 18 0 13 0 3 20 20 18 24 13 5 137 chain 2741 chr2 243199373 + 84924955 84924999 Charlie4a 502 + 365 410 229616 26 4 5 14 chain 29401 chr2 243199373 + 84947391 84947701 AluYa5 310 - 0 310 87065 310 chain 25517 chr2 243199373 + 84953610 84953908 L1PA4 6152 + 5843 6152 102149 139 3 15 8 1 0 147 chain 8052 chr2 243199373 + 84954464 84954676 MER6B 211 - 0 211 170742 13 9 13 25 4 1 33 2 0 9 46 42 49 9 13 13 chain 17512 chr2 243199373 + 84957575 84957799 MER30 238 - 0 237 134233 100 1 0 10 4 18 109 chain 9340 chr2 243199373 + 84959461 84959628 L1MB8 1703 + 1327 1481 163849 13 15 0 37 1 5 41 14 12 46 chain 2660 chr2 243199373 + 84968209 84968239 L1M2a1 1281 - 701 731 230904 30 chain 21919 chr2 243199373 + 84980629 84980903 AluSp 311 + 30 306 120547 246 4 6 24 chain 24208 chr2 243199373 + 84982918 84983249 THE1B 368 + 3 356 109167 41 5 20 108 2 0 21 2 0 41 3 15 44 1 0 63 chain 6644 chr2 243199373 + 84996142 84996224 LTR18B 584 + 97 179 180137 82 chain 12761 chr2 243199373 + 85003697 85003836 L1PA5 6144 - 542 681 149204 139 chain 46625 chr2 243199373 + 85003836 85004370 L1PA5 6144 + 5602 6135 61521 291 1 0 242 chain 128887 chr2 243199373 + 85021045 85022451 L1PA3long 6157 + 4740 6157 28338 1238 0 11 168 chain 41282 chr2 243199373 + 85027934 85028383 L1PA2 6032 + 5583 6032 67554 449 chain 21880 chr2 243199373 + 85053675 85053946 AluSg7 307 - 28 298 120712 146 2 1 123 chain 19411 chr2 243199373 + 85071288 85071613 THE1B 368 + 0 339 128917 150 68 83 9 2 1 96 chain 29696 chr2 243199373 + 85080354 85080726 THE1C 375 - 0 375 85844 25 1 0 211 0 4 135 chain 105412 chr2 243199373 + 85094493 85095804 L1PA5 6144 + 4917 6144 35395 429 0 1 390 1 0 278 112 28 101 chain 5612 chr2 243199373 + 85111614 85111707 MSTD 398 + 300 394 188959 20 11 12 62 chain 12658 chr2 243199373 + 85112421 85112612 MER90a 614 + 47 244 149612 121 24 30 46 chain 25812 chr2 243199373 + 85139382 85139677 AluY 311 + 3 300 100817 102 0 1 26 0 1 167 chain 36071 chr2 243199373 + 85151825 85152400 MER51A 677 + 11 670 74800 129 3 0 37 0 44 13 16 40 70 21 20 126 37 58 67 1 0 55 chain 25263 chr2 243199373 + 85156332 85156629 AluSp 311 + 10 305 103399 67 1 0 101 1 0 127 chain 24530 chr2 243199373 + 85176437 85176739 AluSc 308 + 4 304 107374 5 1 0 248 2 1 46 chain 29079 chr2 243199373 + 85177895 85178203 AluYg6 310 - 2 310 88648 308 chain 2884 chr2 243199373 + 85183644 85183675 MER58A 224 - 144 175 227291 31 chain 25524 chr2 243199373 + 85194699 85194997 AluSq10 312 + 8 306 102122 125 1 0 149 0 1 23 chain 23122 chr2 243199373 + 85205850 85206126 AluSp 311 - 24 302 115032 168 0 1 90 0 1 18 chain 24547 chr2 243199373 + 85206949 85207254 AluSp 311 - 16 311 107270 174 11 0 81 0 1 39 chain 4936 chr2 243199373 + 85216066 85216222 MER58B 340 - 165 331 195867 38 36 41 29 40 45 13 chain 12791 chr2 243199373 + 85223950 85224145 Tigger3a 397 - 23 209 149098 99 29 20 67 chain 29029 chr2 243199373 + 85244132 85244448 AluYb8 318 - 4 318 88854 188 2 0 126 chain 22521 chr2 243199373 + 85285228 85285518 AluSg7 307 + 0 290 117929 69 1 4 58 0 1 142 9 5 11 chain 3881 chr2 243199373 + 85308385 85308431 MLT1F2-int 1139 - 910 956 209161 46 chain 48186 chr2 243199373 + 85313835 85314451 L1PA8 5853 - 0 615 60332 90 11 12 9 1 0 63 2 4 67 2 0 46 1 0 43 1 2 109 7 6 164 chain 68096 chr2 243199373 + 85320837 85321582 L1PA3long 6157 - 0 744 49204 469 1 0 275 chain 10756 chr2 243199373 + 85322121 85322237 SVA_B 1603 - 0 116 157176 116 chain 27971 chr2 243199373 + 85326981 85327276 AluY 311 + 15 311 93107 117 0 1 178 chain 22190 chr2 243199373 + 85328384 85328660 AluYc 301 + 8 277 119393 106 6 0 6 1 0 157 chain 29468 chr2 243199373 + 85335370 85335679 AluYb8 318 + 1 310 86765 309 chain 23376 chr2 243199373 + 85352873 85353156 AluSc 308 - 24 307 113779 283 chain 9149 chr2 243199373 + 85355954 85356112 Tigger3a 397 + 203 374 164817 105 34 47 19 chain 10234 chr2 243199373 + 85404312 85404444 MLT1A0 366 - 202 336 159456 8 0 2 8 1 0 95 0 1 20 chain 222922 chr2 243199373 + 85450917 85453495 L1PA6 6164 - 3 2596 17713 150 0 1 159 1 0 358 0 2 24 8 11 288 0 5 412 0 1 71 0 2 552 0 1 297 0 1 258 chain 29316 chr2 243199373 + 85519132 85519442 AluYa5 310 - 0 310 87458 310 chain 5924 chr2 243199373 + 85526161 85526239 MADE1 96 - 0 96 185949 26 0 1 17 0 17 35 chain 10547 chr2 243199373 + 85538747 85538986 Tigger3b 1229 - 0 257 158059 17 44 46 44 1 9 61 2 0 21 29 39 20 chain 2962 chr2 243199373 + 85556930 85556963 L1MA4 2864 + 2299 2332 225844 33 chain 125089 chr2 243199373 + 85560499 85562038 LTR12C 1709 - 0 1709 29363 84 1 3 121 4 0 273 11 4 106 8 6 264 0 118 265 0 1 83 0 43 39 7 26 273 chain 22797 chr2 243199373 + 85566100 85566397 AluSp 311 - 2 309 116587 47 0 3 46 0 6 146 15 16 43 chain 4641 chr2 243199373 + 85588050 85588102 U3 216 - 146 198 199162 52 chain 8241 chr2 243199373 + 85594707 85594808 HY3 101 + 0 101 169727 101 chain 48019 chr2 243199373 + 85604824 85605412 LTR10C 591 - 0 591 60470 72 2 3 148 0 1 310 0 1 56 chain 34895 chr2 243199373 + 85605413 85605875 MER4A1 472 - 0 472 76346 4 0 1 14 0 4 161 1 0 103 7 11 144 1 0 8 0 1 4 0 2 15 chain 193662 chr2 243199373 + 85605883 85609995 MER4-int 2692 - 0 2572 19717 116 2 1 110 5 6 96 0 6 68 346 26 262 5 0 50 2 0 62 1 0 125 0 1 8 2 4 282 3 4 64 1 17 27 1 0 32 0 1 77 317 0 42 0 1 400 0 2 82 1 0 307 18 17 160 641 18 44 299 0 54 chain 25327 chr2 243199373 + 85626857 85627149 AluSp 311 - 5 297 103083 292 chain 9495 chr2 243199373 + 85661629 85661740 HY1 111 + 0 111 163097 111 chain 3231 chr2 243199373 + 85681389 85681426 MER57B1 401 - 364 401 220411 37 chain 34512 chr2 243199373 + 85682437 85682923 LTR12F 595 - 0 595 76888 203 1 0 41 0 64 23 18 0 16 3 2 10 0 66 24 2 0 41 1 2 103 chain 8699 chr2 243199373 + 85687268 85687375 HY1 111 - 0 111 167195 60 0 4 47 chain 24081 chr2 243199373 + 85691489 85691772 AluSg7 307 - 14 297 109867 283 chain 6896 chr2 243199373 + 85693019 85693102 Tigger3b 1229 - 687 770 178222 83 chain 194012 chr2 243199373 + 85710173 85712268 L1PA2 6032 + 3934 6032 19671 1873 0 1 47 0 2 175 chain 167425 chr2 243199373 + 85714147 85716183 SVA_D 2077 + 0 2076 22347 25 5 0 535 0 40 98 0 40 140 0 83 73 2 4 29 0 1 365 0 1 47 127 0 233 0 1 261 0 4 96 chain 6731 chr2 243199373 + 85715466 85715593 SVA_D 2077 + 1129 1256 79690 127 chain 5203 chr2 243199373 + 85725113 85725208 LTR54 533 + 9 101 192992 56 16 14 13 1 0 9 chain 9517 chr2 243199373 + 85725500 85725684 MER57B2 428 + 0 232 162992 48 18 28 31 24 62 63 chain 8405 chr2 243199373 + 85736708 85736896 L1MB3 1562 + 1368 1524 168818 53 69 37 66 chain 22828 chr2 243199373 + 85787436 85787741 AluSq2 311 + 9 296 116455 119 15 0 147 12 9 12 chain 4218 chr2 243199373 + 85791912 85791962 L1MC2 1988 + 1861 1911 204311 50 chain 23810 chr2 243199373 + 85813913 85814208 AluY 311 + 1 293 111412 40 5 1 90 0 1 160 chain 9741 chr2 243199373 + 85841235 85841355 MER41C 542 - 0 120 161888 120 chain 25851 chr2 243199373 + 85842767 85843052 AluSp 311 - 24 311 100648 22 0 2 263 chain 7425 chr2 243199373 + 85857112 85857275 L1PB1 5432 - 10 160 174612 21 1 0 9 1 0 22 1 0 12 0 1 11 2 0 14 1 0 5 3 1 18 20 8 4 1 0 11 0 7 6 chain 28815 chr2 243199373 + 85860954 85861259 AluYa5 310 - 5 310 89826 305 chain 41405 chr2 243199373 + 85884763 85885269 LTR7B 505 - 0 505 67409 95 0 2 153 24 21 234 chain 23318 chr2 243199373 + 85916133 85916417 AluSp 311 + 3 287 114106 284 chain 8343 chr2 243199373 + 85942152 85942254 MLT1F1 559 + 0 102 169158 102 chain 8015 chr2 243199373 + 86047743 86047847 L1MCb 1641 - 474 578 170962 38 0 1 4 1 0 61 chain 31642 chr2 243199373 + 86050537 86050926 MLT2A1 477 - 81 477 81418 11 0 2 210 0 4 18 8 9 142 chain 21539 chr2 243199373 + 86064245 86064551 L1MA4 2864 + 2378 2685 122003 42 0 1 76 3 2 21 3 4 42 1 4 105 3 0 10 chain 25734 chr2 243199373 + 86108070 86108429 THE1A 353 + 0 353 101147 84 0 1 24 2 1 22 0 3 123 1 0 41 13 5 49 chain 121709 chr2 243199373 + 86108429 86110262 THE1A-int 1579 + 0 1579 30479 19 0 1 180 3 2 66 0 1 541 0 31 432 302 0 83 0 5 28 1 12 178 chain 26587 chr2 243199373 + 86110262 86110624 THE1A 353 + 0 353 97701 84 0 1 26 1 0 147 1 0 41 13 5 49 chain 10143 chr2 243199373 + 86117028 86117151 MER41C 542 - 0 123 159881 123 chain 4134 chr2 243199373 + 86139072 86139155 MER4C 627 - 511 593 205447 35 19 19 18 1 0 10 chain 73546 chr2 243199373 + 86155559 86156566 LTR12D 1347 - 0 1347 46765 250 0 97 289 0 17 15 0 150 115 0 3 75 2 38 17 66 104 75 1 0 102 chain 551452 chr2 243199373 + 86190929 86197058 L1PA4 6152 + 14 6139 1258 518 4 0 610 1 0 1177 0 1 4 0 1 967 1 0 2847 chain 20509 chr2 243199373 + 86217796 86218056 AluSz 310 + 8 272 125599 96 6 10 158 chain 6588 chr2 243199373 + 86240559 86240980 MLT1B 390 + 4 366 180551 11 3 0 11 2 1 31 5 15 13 290 224 11 0 1 44 chain 3257 chr2 243199373 + 86283251 86283286 L1MB7 1623 + 82 117 219815 35 chain 49459 chr2 243199373 + 86283610 86284403 Tigger1 2417 + 921 1739 59418 94 2 0 20 1 4 8 0 6 95 1 0 48 0 1 15 8 11 25 22 23 34 0 1 16 3 0 36 7 10 109 3 2 102 0 1 20 8 15 49 2 0 5 0 2 24 19 25 17 chain 23885 chr2 243199373 + 86338870 86339161 AluSp 311 - 16 306 110988 38 2 1 251 chain 23329 chr2 243199373 + 86424898 86425192 AluY 311 + 28 311 114035 93 12 0 11 0 1 55 0 1 92 1 0 30 chain 13281 chr2 243199373 + 86432378 86432620 Tigger2 2703 - 152 431 147170 30 1 0 26 20 37 45 1 7 28 23 38 68 chain 50092 chr2 243199373 + 86472322 86472878 LTR14 556 + 0 556 58950 556 chain 3566 chr2 243199373 + 86473195 86473255 MER3 215 + 144 210 214190 24 5 11 31 chain 75109 chr2 243199373 + 86488421 86489390 LTR5_Hs 974 + 0 974 45963 169 1 0 120 0 1 176 0 1 189 1 0 160 50 54 4 0 1 99 chain 12067 chr2 243199373 + 86492740 86492893 L1PB4 2604 + 2417 2569 151913 135 1 0 17 chain 29346 chr2 243199373 + 86493460 86493778 AluYb8 318 + 0 318 87315 318 chain 13946 chr2 243199373 + 86537448 86537622 Tigger3a 397 + 158 336 144771 21 0 4 153 chain 53210 chr2 243199373 + 86573032 86573684 SVA_A 1864 - 0 844 56887 57 0 2 478 38 231 33 6 3 40 chain 42498 chr2 243199373 + 86585557 86586044 L1PA4 6152 - 0 488 66015 155 0 1 332 chain 11395 chr2 243199373 + 86591999 86592163 MSTA 426 - 226 408 154718 68 18 36 78 chain 128107 chr2 243199373 + 86618032 86619537 L1PA7 6471 - 2 1509 28542 7 4 0 88 0 1 236 0 1 519 0 3 312 1 0 4 0 1 37 0 1 297 chain 31230 chr2 243199373 + 86747965 86748415 LTR7B 505 + 0 503 82109 103 0 20 52 0 38 12 34 27 26 0 2 42 0 1 39 1 0 26 0 1 52 2 1 61 chain 28545 chr2 243199373 + 86763113 86763420 AluYa5 310 - 6 310 90988 178 3 0 126 chain 154408 chr2 243199373 + 86771466 86773480 SVA_A 1864 - 0 1837 24057 420 0 1 6 0 4 150 34 0 38 2 0 37 2 0 37 2 0 27 1 0 9 2 0 37 2 0 37 2 0 37 2 0 37 2 0 37 2 0 37 2 0 27 1 0 79 7 0 44 5 4 37 3 0 37 3 0 87 37 0 19 0 2 37 7 8 22 74 0 318 3 0 73 1 0 92 chain 2566 chr2 243199373 + 86772042 86772076 SVA_A 1864 - 692 728 54195 23 7 9 4 chain 496 chr2 243199373 + 86772797 86772834 SVA_A 1864 - 1005 1042 51925 37 chain 992 chr2 243199373 + 86772919 86772993 SVA_A 1864 - 1127 1201 51925 74 chain 151379 chr2 243199373 + 86775310 86777490 SVA_A 1864 - 0 1836 24415 659 4 1 33 2 0 26 1 0 8 48 10 66 2 0 40 3 0 52 40 6 75 2 1 84 2 0 40 1 0 144 225 0 40 0 2 46 34 0 503 chain 7209 chr2 243199373 + 86776642 86776790 SVA_A 1864 - 1058 1205 66237 43 28 27 77 chain 1331 chr2 243199373 + 86776815 86776845 SVA_A 1864 - 1303 1336 158403 22 0 3 8 chain 35760 chr2 243199373 + 86787396 86787840 L1PA7 6471 + 6016 6470 75192 83 0 8 213 0 2 82 0 2 53 2 0 11 chain 17809 chr2 243199373 + 86787842 86788191 MSTA 426 - 58 426 133378 49 11 19 48 18 27 16 2 0 53 55 58 71 1 2 25 chain 4044 chr2 243199373 + 86801068 86801121 MLT1C 463 + 63 117 206740 37 1 2 15 chain 41998 chr2 243199373 + 86817506 86818461 L1PREC2 3366 - 124 958 66628 16 24 15 15 181 105 7 0 9 12 1 0 4 1 0 11 2 0 38 6 4 35 22 8 11 3 0 30 3 1 15 6 1 17 29 21 14 7 3 44 1 0 54 3 1 40 1 0 91 1 2 127 1 0 4 0 1 78 chain 3621 chr2 243199373 + 86871331 86871376 MSTA 426 + 381 426 213319 45 chain 566729 chr2 243199373 + 86882361 86888391 L1HS 6032 - 1 6031 106 6030 chain 525279 chr2 243199373 + 86890812 86896961 L1PA6 6164 + 0 6156 4661 64 0 1 395 15 14 372 0 1 158 0 1 446 2 1 391 0 2 479 13 0 407 0 9 448 0 1 536 5 0 209 0 1 16 0 1 104 0 1 379 1 5 870 0 4 699 0 1 140 chain 7051 chr2 243199373 + 86901017 86901115 MER5A1 166 - 40 140 177104 41 5 6 20 0 1 32 chain 28389 chr2 243199373 + 86922224 86922685 LTR10A 586 + 81 570 91626 22 5 0 6 0 6 25 42 40 55 9 38 18 0 1 5 12 11 209 0 1 46 1 0 6 chain 33436 chr2 243199373 + 86930879 86931293 LTR3B 427 + 0 423 78509 161 1 0 139 0 3 26 0 7 87 chain 26420 chr2 243199373 + 86943744 86944051 AluY 311 + 6 311 98335 127 2 0 178 chain 3972 chr2 243199373 + 86963635 86963682 L1MB8 1703 - 1136 1183 207803 47 chain 6749 chr2 243199373 + 87006135 87006209 MER5A1 166 + 7 81 179335 74 chain 7618 chr2 243199373 + 87067170 87067383 MER51C 639 + 57 158 173427 31 56 0 41 56 0 29 chain 3060 chr2 243199373 + 87067301 87067335 MER51C 639 + 61 95 223821 34 chain 5629 chr2 243199373 + 87083956 87084030 MER33 330 + 113 187 188769 74 chain 46503 chr2 243199373 + 87106948 87107542 L1PB3 3668 + 1481 2087 61592 105 0 6 36 1 0 35 0 7 417 chain 22193 chr2 243199373 + 87125107 87125441 Tigger1 2417 + 1541 1831 119383 225 30 0 3 22 0 21 0 8 33 chain 2707 chr2 243199373 + 87152163 87152226 L1ME2z 1083 - 665 730 230148 16 19 21 28 chain 14431 chr2 243199373 + 87165749 87165933 PABL_A 660 - 464 660 143110 106 0 9 15 0 3 63 chain 4412 chr2 243199373 + 87168687 87168758 MER8 282 + 0 136 201769 49 8 73 14 chain 28278 chr2 243199373 + 87197657 87197956 AluYa5 310 - 11 310 92008 299 chain 26052 chr2 243199373 + 87220681 87221044 MLT2A1 477 - 98 477 99822 13 21 33 160 0 4 20 6 7 77 1 0 65 chain 3972 chr2 243199373 + 87287297 87287344 L1MB8 1703 + 520 567 207802 47 chain 28837 chr2 243199373 + 87326662 87326973 AluYa5 310 + 0 310 89734 132 1 0 178 chain 121378 chr2 243199373 + 87350389 87351701 L1PA2 6032 + 4718 6032 30571 230 0 2 1082 chain 22851 chr2 243199373 + 87363598 87363877 AluSc5 308 + 0 287 116337 16 1 9 262 chain 3727 chr2 243199373 + 87393061 87393106 Tigger4a 237 + 99 144 211522 45 chain 24453 chr2 243199373 + 87408999 87409357 THE1D 372 - 0 372 107789 148 40 54 9 0 1 58 1 0 102 chain 3186 chr2 243199373 + 87455976 87456012 MIR 256 + 99 135 221193 36 chain 23930 chr2 243199373 + 87457374 87457806 MER4E 760 - 7 431 110754 218 105 97 26 1 0 7 1 0 38 4 6 32 chain 9688 chr2 243199373 + 87476164 87476281 LTR37A 408 - 21 138 162162 117 chain 3303 chr2 243199373 + 87490474 87490516 MIR 256 - 122 164 218911 42 chain 6468 chr2 243199373 + 87494517 87494709 MLT2B1 522 + 336 519 181493 18 33 14 50 23 24 15 24 33 29 chain 249895 chr2 243199373 + 87497111 87499878 L1PA4 6152 - 0 2797 16262 8 0 1 1267 0 1 527 0 13 651 0 2 26 0 9 154 0 4 134 chain 50111 chr2 243199373 + 87499878 87500443 L1P1 4361 + 2790 3352 58935 119 3 0 443 chain 19092 chr2 243199373 + 87500450 87500730 Tigger1 2417 - 1244 1540 129837 21 1 0 4 2 10 44 7 8 19 4 12 178 chain 18169 chr2 243199373 + 87514054 87514274 AluSp 311 + 84 303 132409 127 1 0 92 chain 26726 chr2 243199373 + 87522992 87523340 THE1A 353 - 0 346 97238 139 3 0 5 0 3 96 1 0 25 5 4 74 chain 125007 chr2 243199373 + 87523352 87524910 THE1A-int 1579 - 5 1579 29391 12 1 0 87 0 1 109 5 20 171 0 1 291 4 5 253 3 0 317 0 1 154 0 1 151 chain 26303 chr2 243199373 + 87524910 87525254 THE1A 353 - 0 353 98818 108 0 7 96 0 4 28 2 1 27 1 0 82 chain 17658 chr2 243199373 + 87572855 87573104 L1PA8 5853 - 0 245 133815 90 4 3 19 2 1 51 12 10 71 chain 12487 chr2 243199373 + 87595095 87595259 L1MA5 2750 + 2435 2599 150308 129 1 0 4 0 1 30 chain 65353 chr2 243199373 + 87600153 87600903 L1PA5 6144 - 2 745 50396 6 7 0 737 chain 14045 chr2 243199373 + 87781229 87781416 MLT2D 439 + 0 196 144397 97 1 3 28 0 1 12 0 6 49 chain 8003 chr2 243199373 + 87789323 87789413 L1PA5 6144 + 6053 6143 171037 90 chain 28139 chr2 243199373 + 87855258 87855614 THE1A 353 - 0 353 92508 153 1 0 90 1 0 23 1 0 87 chain 43134 chr2 243199373 + 87998051 87998531 L1P1 4361 - 33 511 65249 23 1 0 155 1 0 300 chain 124224 chr2 243199373 + 87998533 87999880 L1PA2 6032 + 4682 6032 29611 595 0 3 752 chain 22851 chr2 243199373 + 88011785 88012064 AluSc5 308 + 0 287 116336 16 1 9 262 chain 29754 chr2 243199373 + 88041082 88041480 MER83 447 - 43 447 85635 31 0 4 263 0 1 50 18 19 36 chain 26052 chr2 243199373 + 88075521 88075884 MLT2A1 477 + 0 379 99821 65 1 0 77 6 7 20 0 4 160 21 33 13 chain 22855 chr2 243199373 + 88104635 88104918 AluSp 311 + 12 295 116307 8 1 0 210 0 1 64 chain 5493 chr2 243199373 + 88129788 88129850 THE1B-int 1605 - 646 708 190118 62 chain 8458 chr2 243199373 + 88141014 88141108 L1PA3long 6157 - 2644 2738 168032 94 chain 240050 chr2 243199373 + 88141108 88143741 L1PA3long 6157 + 3523 6157 16775 180 0 1 2453 chain 159366 chr2 243199373 + 88173459 88177989 L1PA11 4918 - 451 4681 23420 73 7 6 39 9 18 539 0 1 4 1 0 4 25 16 295 6 22 5 0 3 202 0 4 193 0 2 7 4 2 179 19 14 73 11 20 7 10 0 13 2218 1901 31 1 0 81 0 2 208 7 7 4 0 1 132 6 5 117 chain 17193 chr2 243199373 + 88179131 88179817 L1MA2 4263 - 149 824 135053 10 1 0 34 0 1 11 7 0 92 1 0 8 1 0 43 220 221 20 42 41 30 130 128 36 chain 17493 chr2 243199373 + 88191496 88191713 MER41C 542 + 324 542 134283 189 0 1 28 chain 39204 chr2 243199373 + 88206532 88206946 L1HS 6032 + 5618 6032 70448 414 chain 37087 chr2 243199373 + 88212656 88213074 L1PA4 6152 + 5735 6152 73402 399 1 0 18 chain 61254 chr2 243199373 + 88224978 88225717 L1PA8A 6298 - 406 1150 52228 397 1 6 341 chain 28684 chr2 243199373 + 88225717 88226078 L1PA8A 6298 + 5884 6247 90393 137 13 14 198 0 1 13 chain 27402 chr2 243199373 + 88231064 88231437 THE1C 375 + 0 373 94961 125 3 0 58 1 2 5 1 0 22 1 4 157 chain 59785 chr2 243199373 + 88246888 88247601 LTR30 714 + 0 714 52937 448 15 16 250 chain 23169 chr2 243199373 + 88247901 88248197 AluSp 311 - 16 309 114817 13 3 0 105 1 0 4 0 1 170 chain 14431 chr2 243199373 + 88264138 88264322 PABL_A 660 + 0 196 143109 63 0 3 15 0 9 106 chain 14999 chr2 243199373 + 88294871 88295141 Tigger1 2417 - 586 812 141321 33 76 32 161 chain 22638 chr2 243199373 + 88320969 88321209 AluYa5 310 + 70 310 117386 240 chain 24715 chr2 243199373 + 88322978 88323267 AluSp 311 - 18 311 106356 136 0 4 153 chain 39621 chr2 243199373 + 88325903 88326425 MER41A 554 + 0 545 69861 76 5 4 135 1 0 109 5 30 191 chain 12769 chr2 243199373 + 88356296 88356485 PrimLTR79 487 - 282 474 149183 39 9 12 97 0 1 22 5 4 17 chain 16605 chr2 243199373 + 88386352 88386528 L1PA2 6032 - 0 176 136652 176 chain 46373 chr2 243199373 + 88407060 88407602 L1P1 4361 - 3817 4359 61705 542 chain 80834 chr2 243199373 + 88449356 88450262 L1PA4 6152 - 991 1897 43255 534 1 0 290 0 1 81 chain 86938 chr2 243199373 + 88450262 88451240 L1PA4 6152 + 5157 6143 40809 849 0 7 51 0 1 78 chain 22639 chr2 243199373 + 88503043 88503420 THE1B 368 + 0 368 117381 15 7 5 84 1 0 4 1 2 9 12 7 46 3 1 92 22 23 5 1 0 75 chain 16779 chr2 243199373 + 88503759 88504505 L1PB1 5432 - 10 391 136171 18 1 0 12 1 0 22 1 0 24 2 0 14 393 57 39 1 0 15 2 1 52 2 0 9 16 13 12 1 0 4 21 14 17 9 0 30 8 8 20 chain 7972 chr2 243199373 + 88529090 88529183 HY4 93 - 0 93 171211 93 chain 31606 chr2 243199373 + 88536805 88537260 MLT2A1 477 + 0 477 81474 169 1 5 136 20 4 64 22 56 43 chain 31125 chr2 243199373 + 88547797 88548254 MER66B 489 - 0 441 82296 146 28 3 30 8 15 211 10 12 24 chain 3085 chr2 243199373 + 88548699 88548738 MLT1F2 592 - 2 40 223230 33 1 0 5 chain 3044 chr2 243199373 + 88580604 88580641 MER3 215 - 8 45 224117 37 chain 29444 chr2 243199373 + 88600831 88601142 AluYa5 310 - 0 310 86888 184 1 0 126 chain 8404 chr2 243199373 + 88602287 88602398 Tigger1 2417 + 2251 2361 168832 4 1 0 106 chain 27212 chr2 243199373 + 88606083 88606375 AluYa5 310 - 10 299 95553 182 3 0 107 chain 67500 chr2 243199373 + 88615505 88616435 L1PA8 5853 - 0 885 49447 93 1 0 19 2 1 45 27 24 63 2 0 46 1 0 46 0 1 40 43 4 462 0 2 8 8 7 24 chain 2894 chr2 243199373 + 88620048 88620096 MER81 114 - 0 49 227123 13 5 6 30 chain 25106 chr2 243199373 + 88635215 88635509 AluSc5 308 - 14 308 104253 294 chain 144751 chr2 243199373 + 88640468 88642124 L1PA5 6144 + 4471 6144 25361 157 1 0 41 0 16 249 0 1 991 0 1 54 1 6 5 5 0 152 chain 13299 chr2 243199373 + 88648186 88648419 L1PA16 3655 + 3401 3619 147085 135 15 19 23 3 0 18 15 0 6 4 3 14 chain 3248 chr2 243199373 + 88652654 88652708 MLT1C 463 + 0 55 220046 13 8 9 33 chain 17435 chr2 243199373 + 88662202 88662584 L1PB1 5432 + 5076 5422 134424 27 4 3 8 3 0 20 2 0 10 1 0 13 9 5 6 2 0 51 1 0 18 5 4 40 1 0 15 1 0 6 60 44 24 1 0 22 1 0 12 1 0 18 chain 26047 chr2 243199373 + 88686888 88687176 AluSp 311 + 9 297 99837 288 chain 5759 chr2 243199373 + 88717442 88717564 LTR40a 516 - 18 144 187567 8 1 0 4 1 0 4 0 1 26 29 31 42 0 3 7 chain 25406 chr2 243199373 + 88717857 88718164 AluSq10 312 + 0 305 102657 125 2 0 180 chain 10271 chr2 243199373 + 88720519 88720687 MER44A 345 + 70 244 159278 30 0 2 8 22 18 6 0 1 41 0 7 61 chain 5409 chr2 243199373 + 88762286 88762366 MADE1 96 - 0 96 190902 38 4 20 38 chain 4556 chr2 243199373 + 88785511 88785564 L1MD 993 - 410 463 200145 53 chain 3956 chr2 243199373 + 88803255 88803384 LTR12C 1709 + 666 1037 208047 40 65 307 24 chain 30841 chr2 243199373 + 88833050 88833530 MLT2A1 477 + 9 477 82782 78 1 0 82 4 1 101 0 1 38 0 1 14 3 10 36 74 57 49 chain 28154 chr2 243199373 + 88833792 88834092 AluYa5 310 - 7 310 92446 230 0 3 70 chain 26726 chr2 243199373 + 88886443 88886750 AluSx4 309 + 1 308 97239 307 chain 15188 chr2 243199373 + 88902237 88902481 L1PA8 5853 + 5609 5853 140807 66 5 4 57 10 9 15 1 0 66 9 12 15 chain 4382 chr2 243199373 + 88924567 88924622 MER5A1 166 - 6 61 202175 55 chain 3748 chr2 243199373 + 88952904 88952945 MamRep137 426 - 150 191 211204 41 chain 23601 chr2 243199373 + 88973082 88973444 THE1D 372 + 0 372 112582 104 0 1 40 37 46 53 8 9 87 1 0 32 chain 27448 chr2 243199373 + 88987185 88987548 THE1B 368 + 0 368 94825 12 2 1 27 0 5 93 0 4 30 2 1 19 2 0 176 chain 119158 chr2 243199373 + 89002246 89003745 THE1A-int 1579 - 17 1551 31356 54 0 1 224 1 0 804 4 6 201 0 4 45 0 16 59 0 10 22 0 3 85 chain 51009 chr2 243199373 + 89004194 89004813 L1PA10 4194 + 3539 4161 58301 69 0 4 318 0 2 13 0 4 55 3 0 112 3 0 34 1 0 11 chain 38177 chr2 243199373 + 89016731 89017185 MER4A1 472 - 0 472 71874 84 0 1 333 0 17 37 chain 202343 chr2 243199373 + 89017192 89019876 MER4-int 2692 - 0 2691 19034 401 4 5 22 4 1 68 0 1 15 0 1 46 0 2 11 0 4 96 5 0 69 3 0 23 3 0 20 0 1 126 25 34 14 0 1 222 5 0 32 0 2 143 0 2 80 1 0 45 0 1 16 1 2 35 0 1 142 0 2 96 9 7 180 4 0 69 0 3 31 1 2 294 0 1 205 6 5 13 4 1 15 0 6 42 2 0 21 1 0 14 chain 62048 chr2 243199373 + 89020177 89020892 L1PA7 6471 + 5754 6467 51879 705 2 0 8 chain 11954 chr2 243199373 + 89021099 89021244 L1PA7 6471 + 5999 6151 152388 11 0 2 106 0 5 28 chain 36522 chr2 243199373 + 89023188 89023641 MER4A1 472 - 0 472 74214 84 0 1 135 0 1 197 1 18 36 chain 10664 chr2 243199373 + 89025794 89025997 MER30 238 + 0 238 157544 14 29 47 33 3 6 7 4 0 12 1 19 100 chain 282872 chr2 243199373 + 89029244 89032259 L1HS 6032 + 3017 6032 14480 3015 chain 121561 chr2 243199373 + 89058407 89059973 THE1B-int 1605 + 0 1605 30517 15 0 2 148 2 0 155 0 1 109 1 26 152 0 13 49 7 6 71 10 1 7 0 9 153 0 1 566 5 4 11 0 1 105 chain 120282 chr2 243199373 + 89062099 89063558 L1PA7 6471 - 4 1456 30948 9 2 0 67 0 1 77 8 0 14 4 5 208 6 0 87 0 2 380 9 12 100 0 2 275 0 1 31 1 0 181 chain 73995 chr2 243199373 + 89076782 89077737 L1PA7 6471 - 2 965 46515 161 1 0 198 2 0 7 0 2 122 21 21 247 1 0 45 0 11 37 1 0 112 chain 83609 chr2 243199373 + 89077737 89078772 L1PA7 6471 + 4434 5477 42070 91 0 4 145 0 4 233 3 10 275 1 0 135 7 1 145 chain 192030 chr2 243199373 + 89092596 89094704 L1PA4 6152 + 4043 6152 19866 1257 0 1 851 chain 25013 chr2 243199373 + 89112881 89113217 THE1B 368 + 0 338 104721 13 2 0 24 1 6 129 12 11 155 chain 94688 chr2 243199373 + 89118144 89119225 L1PA5 6144 + 5064 6144 38168 230 1 0 850 chain 4846 chr2 243199373 + 89154585 89154645 MLT1C 463 - 339 399 196828 60 chain 78432 chr2 243199373 + 89166010 89167002 LTR5B 1012 - 1 1010 44302 348 0 1 78 0 1 95 1 0 114 10 9 223 1 14 116 0 4 6 chain 10282 chr2 243199373 + 89176162 89176325 L1PB4 2604 - 52 214 159225 70 10 11 63 7 5 13 chain 6661 chr2 243199373 + 89179048 89179126 MER96B 391 - 58 135 179992 45 1 0 32 chain 50004 chr2 243199373 + 89189139 89189747 L1PA7 6471 - 10 607 59014 145 3 0 9 0 1 308 0 1 109 17 7 17 chain 121154 chr2 243199373 + 89219463 89226384 SVA_B 1603 + 50 1603 30651 455 1 0 73 0 2 178 0 3 63 42 0 62 5377 50 40 1 0 621 2 0 6 chain 3728 chr2 243199373 + 89220233 89220275 SVA_B 1603 + 906 948 106576 42 chain 15445 chr2 243199373 + 89220337 89220511 SVA_B 1603 + 1087 1261 106576 174 chain 14070 chr2 243199373 + 89221503 89221685 MER75B 242 - 11 191 144319 5 2 0 10 1 0 85 0 1 79 chain 10308 chr2 243199373 + 89251871 89252002 LTR9B 643 + 0 131 159097 47 1 0 4 0 1 79 chain 79588 chr2 243199373 + 89298764 89299720 LTR13A 966 - 0 955 43787 200 1 0 105 2 0 614 0 1 15 0 1 19 chain 35965 chr2 243199373 + 89350459 89350921 LTR2B 499 + 9 499 74937 5 1 0 52 2 0 5 1 0 34 0 31 92 0 1 270 chain 143778 chr2 243199373 + 89362534 89364274 L1PA6 6164 - 3 1755 25518 329 0 1 94 0 1 37 0 10 290 0 1 82 1 0 197 0 1 213 0 1 190 2 1 195 7 6 103 chain 20889 chr2 243199373 + 89375541 89375891 THE1B 368 + 0 368 124324 44 7 22 103 1 0 31 2 0 19 1 0 23 40 46 18 0 1 61 chain 45304 chr2 243199373 + 89457640 89458315 L1PB2 3958 - 448 1131 62713 59 2 0 3 2 0 9 2 0 65 5 0 11 1 0 22 16 19 13 2 0 35 7 28 47 1 0 275 1 0 97 chain 20973 chr2 243199373 + 89458315 89458661 L1PB2 3958 + 3502 3835 124021 42 2 1 72 1 0 66 1 0 18 9 3 18 2 1 30 2 0 18 11 10 54 chain 204826 chr2 243199373 + 89463442 89465958 L1PA7 6471 - 10 3193 18869 652 0 665 128 7 8 639 0 1 481 0 2 5 7 8 36 1 0 232 0 1 80 1 0 26 2 0 219 chain 158687 chr2 243199373 + 89482432 89484204 L1PA4 6152 + 4368 6143 23506 511 0 3 1261 chain 66226 chr2 243199373 + 89485387 89486121 L1PA2 6032 + 5298 6032 49994 734 chain 54647 chr2 243199373 + 89497172 89497947 MER4E1 777 + 0 768 55936 25 13 12 81 4 2 194 6 15 96 1 0 78 56 42 171 0 2 50 chain 24538 chr2 243199373 + 89502703 89503068 LTR7B 505 - 20 505 107322 12 0 1 18 14 13 22 0 1 65 1 42 54 18 86 56 0 10 105 chain 8419 chr2 243199373 + 89509773 89509868 L1PA4 6152 + 6047 6142 168729 95 chain 21200 chr2 243199373 + 89537660 89537921 AluY 311 + 48 310 123213 82 1 2 178 chain 87911 chr2 243199373 + 89558790 89559990 L1PA10 4194 + 2868 4088 40407 256 1 5 6 12 0 6 1 0 117 1 2 19 8 20 94 1 11 132 2 1 239 0 2 21 0 4 252 0 1 32 chain 51479 chr2 243199373 + 89576837 89577434 L1PA5 6144 + 5546 6144 57985 513 0 1 84 chain 26855 chr2 243199373 + 89591577 89591956 MER50B 698 + 270 649 96789 194 30 29 47 1 2 107 chain 31177 chr2 243199373 + 89595554 89596097 LTR9B 643 - 84 638 82206 102 46 48 67 1 0 132 30 18 4 0 1 53 0 13 8 17 4 10 17 40 11 2 0 43 chain 5154 chr2 243199373 + 89623427 89623486 L1P1 4361 - 1699 1758 193504 59 chain 137602 chr2 243199373 + 89847025 89848584 L1PA3long 6157 + 4595 6157 26544 901 0 3 658 chain 6979 chr2 243199373 + 89897687 89897767 L1P1 4361 + 2603 2683 177612 80 chain 3808 chr2 243199373 + 89924193 89924235 LTR8 732 + 0 42 210250 42 chain 33317 chr2 243199373 + 89924947 89925490 LTR9B 643 + 5 559 78709 43 2 0 11 17 40 88 0 1 4 30 18 132 1 0 69 44 46 102 chain 26986 chr2 243199373 + 89929088 89929467 MER50B 698 - 49 428 96330 107 1 2 47 30 29 194 chain 51684 chr2 243199373 + 89943679 89944276 L1PA5 6144 - 0 598 57831 83 0 1 514 chain 24316 chr2 243199373 + 90018014 90018401 LTR7B 505 + 0 505 108571 105 0 10 56 18 86 54 1 42 54 0 1 5 1 0 5 0 1 14 22 21 20 0 1 5 2 0 25 chain 53934 chr2 243199373 + 90023131 90023906 MER4E1 777 - 9 777 56413 50 0 2 171 7 0 6 43 36 72 7 6 96 6 15 194 2 0 83 13 12 25 chain 158550 chr2 243199373 + 90036051 90037823 L1PA4 6152 - 9 1784 23524 1262 0 3 510 chain 204687 chr2 243199373 + 90054288 90056804 L1PA7 6471 + 3278 6461 18877 219 2 0 25 2 1 80 0 1 232 1 0 36 7 8 5 0 2 222 1 0 259 0 1 639 7 8 128 0 665 327 0 1 324 chain 17453 chr2 243199373 + 90061556 90061905 L1PB2 3958 - 120 456 134370 57 63 59 18 30 23 64 1 0 72 2 1 42 chain 45695 chr2 243199373 + 90061905 90062580 L1PB2 3958 + 2827 3510 62317 97 1 0 280 2 1 41 7 28 35 2 0 13 7 10 29 1 0 13 5 0 65 2 0 9 2 0 3 2 0 59 chain 31041 chr2 243199373 + 90084277 90084694 LTR12F 595 - 0 595 82454 20 8 15 71 0 12 112 0 1 149 0 143 14 0 15 43 chain 2604 chr2 243199373 + 90123371 90123402 MER65C 458 - 416 447 231660 31 chain 19755 chr2 243199373 + 90163026 90163376 THE1B 368 - 0 368 127943 18 3 0 5 4 7 31 0 1 18 40 46 23 1 0 27 2 0 23 1 0 103 7 22 44 chain 143416 chr2 243199373 + 90174641 90176389 L1PA6 6164 + 4409 6162 25574 103 7 6 195 9 1 190 0 1 216 0 1 194 1 0 87 0 1 283 0 10 39 0 1 94 0 1 330 chain 36498 chr2 243199373 + 90187990 90188453 LTR2B 499 - 0 490 74241 357 0 31 40 1 0 5 2 0 52 1 0 5 chain 29656 chr2 243199373 + 90236915 90237323 L1PA8 5853 + 5452 5853 86043 112 1 0 44 2 0 74 1 0 6 20 19 33 2 1 19 2 1 92 chain 17658 chr2 243199373 + 90280943 90281192 L1PA8 5853 - 0 245 133814 90 4 3 19 2 1 51 12 10 71 chain 62547 chr2 243199373 + 90303922 90304670 L1PA5 6144 - 2 745 51655 6 7 0 332 9 8 366 0 3 28 chain 512416 chr2 243199373 + 90417552 90423617 L1PA4 6152 + 1 6082 5934 116 2 1 462 1 0 460 0 5 71 0 5 2627 0 1 957 0 7 1369 chain 29609 chr2 243199373 + 90454754 90455083 L1PA5 6144 + 5796 6125 86176 329 chain 3845 chr2 243199373 + 90496734 90496800 L1PA16 3655 - 120 201 209717 27 11 26 28 chain 62547 chr2 243199373 + 90508226 90508974 L1PA5 6144 + 5399 6142 51654 28 0 3 366 9 8 332 7 0 6 chain 17658 chr2 243199373 + 90530883 90531132 L1PA8 5853 + 5608 5853 133813 71 12 10 51 2 1 19 4 3 90 chain 515329 chr2 243199373 + 91639329 91645453 L1PA4 6152 + 1 6141 5633 116 2 1 462 1 0 460 0 5 71 0 5 2627 0 1 957 0 7 1428 chain 29487 chr2 243199373 + 91675456 91675785 L1PA5 6144 + 5796 6125 86679 329 chain 6312 chr2 243199373 + 91718418 91719067 L1PA16 3655 - 120 290 182699 27 11 26 14 478 0 36 47 31 36 chain 64851 chr2 243199373 + 91729894 91730644 L1PA5 6144 + 5399 6142 50631 737 7 0 6 chain 29082 chr2 243199373 + 91735936 91736245 AluYa5 310 + 0 310 88625 108 0 1 201 chain 17658 chr2 243199373 + 91753714 91753963 L1PA8 5853 + 5608 5853 133812 71 12 10 51 2 1 19 4 3 90 chain 56929 chr2 243199373 + 91773232 91773911 L1PA5 6144 + 5458 6144 54575 13 0 4 335 0 1 319 1 3 11 chain 5266 chr2 243199373 + 91869031 91869125 MER20 218 - 82 177 192357 29 23 24 42 chain 3539 chr2 243199373 + 91878377 91878418 MER6B 211 - 3 44 214719 41 chain 22288 chr2 243199373 + 91884935 91885217 AluSc8 310 + 8 290 118958 47 3 0 77 0 3 155 chain 3681 chr2 243199373 + 91947397 91947454 MIR 256 - 183 236 212205 26 7 3 24 chain 8224 chr2 243199373 + 91951947 91952049 MER5A1 166 - 28 140 169821 91 0 10 11 chain 20980 chr2 243199373 + 91959052 91959284 L1PA5 6144 - 12 244 123986 232 chain 188301 chr2 243199373 + 91970800 91973008 L1PA4 6152 + 3930 6141 20212 1368 0 4 70 1 0 769 chain 28885 chr2 243199373 + 92002356 92002681 L1PA5 6144 + 5796 6127 89509 92 1 0 111 0 7 121 chain 3135 chr2 243199373 + 92011789 92011847 MLT2A1 477 + 384 476 222275 18 9 43 31 chain 15734 chr2 243199373 + 92018108 92018303 L1PA7 6471 + 6248 6461 139159 58 0 18 137 chain 15321 chr2 243199373 + 92023793 92024004 AluY 311 + 4 202 140421 129 31 18 51 chain 95767 chr2 243199373 + 92039782 92041020 SVA_F 1814 + 615 1814 37881 43 0 80 149 96 0 60 4 20 186 49 0 365 0 4 276 0 6 10 chain 3072 chr2 243199373 + 92040022 92040070 SVA_F 1814 + 937 1127 139721 5 0 64 6 0 78 37 chain 4409 chr2 243199373 + 92040320 92040369 SVA_F 1814 + 913 977 132390 34 0 15 15 chain 483575 chr2 243199373 + 92089384 92095510 L1PA5 6144 + 0 6140 7605 108 38 51 50 3 2 39 1 3 58 86 103 67 7 6 28 10 11 6 0 2 24 0 1 21 0 3 371 24 0 211 13 4 732 1 0 181 0 1 455 0 1 167 1 2 5 1 0 406 0 4 156 0 1 42 0 1 354 3 0 118 0 3 135 0 1 1876 0 1 192 0 4 128 3 0 5 chain 212678 chr2 243199373 + 92095668 92098165 L1PA6 6164 + 3626 6153 18311 1023 1 0 530 0 4 29 1 0 22 4 6 24 0 20 34 0 5 21 0 1 441 1 2 105 1 0 260 chain 552789 chr2 243199373 + 92109199 92115230 L1PA2 6032 + 0 6032 1097 4543 1 0 83 0 1 1390 0 1 14 chain 7330 chr2 243199373 + 92125100 92125187 L1PA8 5853 + 5766 5853 175225 87 chain 292073 chr2 243199373 + 92135300 92140985 L1P2 5180 + 2 3864 13897 148 1 0 34 5 2 8 1 0 53 18 17 141 1 0 92 13 12 6 1 0 104 0 1 34 1 0 5 14 65 59 0 15 139 0 6 497 0 1 105 1971 96 383 4 5 354 0 1 776 4 0 341 1 0 221 15 6 135 chain 111825 chr2 243199373 + 92137446 92138743 L1P1 4361 - 20 1314 33711 12 2 1 23 1 0 155 1 0 377 0 1 492 1 0 233 chain 81705 chr2 243199373 + 92156787 92157685 L1PA2 6032 + 2918 3816 42888 898 chain 131079 chr2 243199373 + 92157686 92159123 L1PA2 6032 + 3818 5254 27839 1241 1 0 195 chain 70353 chr2 243199373 + 92159125 92159903 L1PA2 6032 + 5254 6028 48238 767 4 0 7 chain 64512 chr2 243199373 + 92185681 92186422 L1PA5 6144 - 4 745 50795 617 1 0 4 0 1 119 chain 15793 chr2 243199373 + 92210509 92210707 L1PA7 6471 - 7 223 138972 140 0 18 58 chain 3135 chr2 243199373 + 92216968 92217026 MLT2A1 477 - 1 93 222276 31 9 43 18 chain 20546 chr2 243199373 + 92217081 92217381 MLT2A1 477 + 47 385 125485 95 0 1 26 1 5 106 0 25 40 19 27 13 chain 28885 chr2 243199373 + 92226140 92226465 L1PA5 6144 - 17 348 89510 121 0 7 111 1 0 92 chain 20138 chr2 243199373 + 92245888 92246199 THE1B 368 + 6 341 126717 38 0 15 110 1 0 29 35 45 98 chain 30829 chr2 243199373 + 92273951 92274283 L1PA2 6032 + 5541 5873 82813 332 chain 13336 chr2 243199373 + 92274286 92274434 L1PA2 6032 + 5881 6029 146948 148 chain 20360 chr2 243199373 + 95328722 95329066 THE1B 368 - 0 368 126035 88 51 0 8 13 74 29 1 0 109 0 15 45 chain 31467 chr2 243199373 + 95330402 95330807 THE1B-int 1605 - 1202 1605 81701 237 0 1 138 5 0 10 0 2 15 chain 7067 chr2 243199373 + 95353255 95353335 MER45C 884 - 716 796 176969 80 chain 16762 chr2 243199373 + 95363512 95363847 L1PB1 5432 - 12 315 136216 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 1 0 42 2 1 16 2 1 50 30 23 9 1 0 21 chain 2720 chr2 243199373 + 95370648 95370683 L1PREC2 3366 - 1373 1409 229900 31 0 1 4 chain 76001 chr2 243199373 + 95410407 95411375 LTR5_Hs 974 - 0 974 45480 191 7 7 97 3 5 17 0 1 85 1 0 109 0 4 458 chain 7131 chr2 243199373 + 95413789 95413879 MER30 238 + 136 232 176534 16 0 6 74 chain 3325 chr2 243199373 + 95437002 95437050 MSTA-int 1630 - 16 63 218487 5 1 0 42 chain 6844 chr2 243199373 + 95450985 95451199 MSTA-int 1630 - 26 244 178632 37 9 16 30 6 5 28 67 65 18 7 0 6 0 7 6 chain 47336 chr2 243199373 + 95462529 95463064 L1PA4 6152 - 12 551 60945 8 0 4 527 chain 2925 chr2 243199373 + 95471195 95471369 MER4E1 777 + 83 225 226598 21 64 60 25 51 23 13 chain 65838 chr2 243199373 + 95498906 95499673 L1PA5 6144 + 5367 6135 50174 299 1 2 467 chain 49041 chr2 243199373 + 95548935 95549497 L1PA5 6144 + 5580 6144 59717 25 0 3 292 2 1 243 chain 18573 chr2 243199373 + 95572048 95573261 L1PA15 4387 + 3895 4352 131300 38 15 24 107 758 0 6 1 2 32 1 0 26 1 0 55 1 0 4 105 107 20 27 20 16 chain 3549 chr2 243199373 + 95587581 95587956 L1MB8 1703 + 1349 1661 214549 39 314 251 22 chain 5604 chr2 243199373 + 95605992 95606086 MLT1B 390 + 295 388 189046 55 14 13 25 chain 315728 chr2 243199373 + 95615183 95618779 L1PA5 6144 - 4 3629 12776 138 0 1 700 0 4 22 0 4 635 0 5 290 0 4 140 0 2 672 0 7 30 0 4 306 2 0 661 chain 10870 chr2 243199373 + 95628728 95628850 L1PA3long 6157 + 6034 6156 156699 122 chain 18474 chr2 243199373 + 95736965 95737178 AluY 311 + 82 296 131574 50 0 1 163 chain 518152 chr2 243199373 + 95758492 95764589 L1PA6 6164 + 0 6159 5363 143 0 12 250 1 0 95 11 10 711 1 0 240 0 2 393 0 4 366 0 3 212 0 3 177 0 21 536 1 0 85 1 10 34 0 14 379 3 0 961 10 1 298 0 1 460 2 11 409 1 0 18 0 4 139 0 5 5 4 0 5 2 0 137 2 0 5 chain 73996 chr2 243199373 + 95795784 95796838 MER11C 1089 - 26 1089 46514 25 0 1 24 1 0 6 0 1 16 0 2 68 1 0 54 0 1 90 13 5 32 0 1 38 1 0 4 1 5 112 22 21 171 1 0 69 23 27 34 0 9 123 2 1 123 chain 15955 chr2 243199373 + 95805689 95805873 L1PA6 6164 + 5818 6003 138501 70 0 1 114 chain 11302 chr2 243199373 + 95805897 95806029 L1PA6 6164 + 6024 6156 155053 132 chain 5324 chr2 243199373 + 95806846 95806921 L1PB1 5432 + 5350 5422 191781 20 1 0 22 1 0 12 1 0 18 chain 25798 chr2 243199373 + 95832966 95833271 AluY 311 + 0 303 100881 28 1 0 95 5 4 176 chain 31467 chr2 243199373 + 95852433 95852795 L1PA4 6152 - 1 360 81698 70 0 2 175 5 0 112 chain 93275 chr2 243199373 + 95857087 95858117 LTR5A 1029 + 0 1029 38573 147 1 0 882 chain 88986 chr2 243199373 + 95858530 95859551 LTR13 1007 + 0 1007 40009 427 14 0 580 chain 6385 chr2 243199373 + 95860259 95860350 L1MA2 4263 + 4031 4114 182137 27 7 0 47 1 0 9 chain 54001 chr2 243199373 + 95872060 95872705 LTR6A 649 - 0 649 56364 27 1 0 184 0 2 138 1 4 294 chain 3808 chr2 243199373 + 95890013 95890055 L1MB8 1703 - 137 179 210253 42 chain 14069 chr2 243199373 + 95895786 95896109 L1PB1 5432 + 5132 5422 144320 12 1 0 14 5 1 9 12 10 42 2 1 15 1 0 43 2 1 16 3 0 6 17 7 17 3 1 5 1 0 14 3 1 23 1 0 22 1 0 12 1 0 13 2 0 5 chain 32818 chr2 243199373 + 95902685 95905345 Tigger1 2417 + 29 2174 79504 12 20 2 47 1 14 80 2065 1554 27 10 3 15 12 16 48 3 0 153 0 5 10 11 13 146 chain 138306 chr2 243199373 + 95908561 95910103 SVA_D 2077 + 3 2076 26434 22 5 0 700 0 3 33 3 0 127 0 535 205 0 1 447 chain 540496 chr2 243199373 + 95917843 95923958 L1PA4 6152 - 9 6146 2733 1037 0 2 97 0 1 651 0 4 1089 0 3 1099 1 9 725 1 0 361 8 9 11 0 2 443 0 2 592 chain 12973 chr2 243199373 + 95923961 95924406 LTR10B1 532 - 61 527 148341 34 9 12 71 1 0 48 1 0 11 237 257 33 chain 122044 chr2 243199373 + 96021104 96022528 L1PA6 6164 - 8 1430 30369 134 8 0 8 4 12 694 2 0 574 chain 27306 chr2 243199373 + 96074149 96074515 THE1B 368 - 0 368 95258 75 1 0 92 4 5 28 1 0 128 0 5 22 2 0 13 chain 15420 chr2 243199373 + 96088768 96089113 L1PB1 5432 + 5109 5422 140133 6 3 0 23 1 0 6 1 0 13 19 13 50 2 1 16 1 0 44 1 0 11 28 16 7 0 2 6 2 0 9 1 0 11 9 7 20 1 0 22 1 0 12 1 0 18 chain 13993 chr2 243199373 + 96131346 96131827 LTR12D 1347 + 587 1000 144601 98 106 21 46 185 202 46 chain 5209 chr2 243199373 + 96142300 96142420 Tigger3c 601 + 451 575 192931 18 0 1 7 43 46 52 chain 29652 chr2 243199373 + 96158777 96159153 L1PA7 6471 + 6093 6468 86059 58 3 2 315 chain 69625 chr2 243199373 + 96159842 96160667 L1PA4 6152 - 12 853 48559 26 0 3 22 0 12 72 4 5 701 chain 17650 chr2 243199373 + 96175860 96176060 L1PA5 6144 - 16 215 133840 173 1 0 26 chain 31883 chr2 243199373 + 96206314 96206690 L1PA7 6471 + 6093 6469 81042 376 chain 4354 chr2 243199373 + 96217203 96217256 tRNA-Glu-GAG_ 72 - 10 63 202542 53 chain 87624 chr2 243199373 + 96232926 96233932 LTR5A 1029 + 0 1029 40524 134 0 13 624 0 10 248 chain 47011 chr2 243199373 + 96235793 96236460 L1PA8 5853 + 5195 5853 61196 73 0 1 97 5 6 192 1 0 37 4 0 7 2 0 68 26 24 43 1 0 17 1 0 93 chain 10211 chr2 243199373 + 96239377 96239514 Tigger3c 601 + 378 516 159566 44 1 2 92 chain 71602 chr2 243199373 + 96247617 96248453 L1PA4 6152 + 5306 6152 47655 584 1 0 110 4 5 106 0 3 25 0 7 6 chain 29640 chr2 243199373 + 96249134 96249511 L1PA7 6471 - 3 378 86097 315 6 4 56 chain 5155 chr2 243199373 + 96265811 96265892 Tigger3c 601 - 26 110 193501 52 8 11 21 chain 14867 chr2 243199373 + 96276318 96276885 LTR12D 1347 - 194 760 141728 25 61 128 46 185 202 46 106 21 98 chain 29147 chr2 243199373 + 96359718 96360035 AluYa5 310 - 0 310 88326 37 7 0 273 chain 125960 chr2 243199373 + 96397434 96399000 THE1A-int 1579 - 11 1578 29113 6 1 0 790 17 16 90 4 3 487 0 1 5 2 1 59 0 3 51 0 1 54 chain 24387 chr2 243199373 + 96399000 96399361 THE1A 353 - 0 353 108154 49 13 5 22 0 1 18 22 21 75 0 1 51 1 0 110 chain 67183 chr2 243199373 + 96412456 96413488 L1MA2 4263 + 2300 3348 49575 88 1 0 117 27 28 24 0 4 83 2 0 27 10 5 7 0 5 79 1 0 4 1 2 129 0 2 172 1 0 153 79 92 27 chain 515126 chr2 243199373 + 96444224 96450353 L1PA6 6164 + 0 6153 5656 408 13 7 152 1 0 17 1 0 203 0 17 50 0 1 231 0 3 119 8 11 215 0 3 419 0 4 464 2 3 91 1 0 550 1 2 222 1 2 46 0 4 459 3 2 73 9 6 144 10 9 908 0 2 750 8 9 66 3 0 481 chain 121130 chr2 243199373 + 96468921 96470272 L1PA5 6144 - 16 1367 30658 1351 chain 72143 chr2 243199373 + 96470272 96471089 L1PA5 6144 + 3970 4787 47267 62 1 0 4 0 1 750 chain 38747 chr2 243199373 + 96481027 96481662 L1PREC2 3366 + 2245 2864 71085 15 6 0 9 10 0 90 0 3 48 22 41 28 5 0 4 0 1 48 12 4 127 20 21 57 5 0 11 2 0 9 0 1 44 2 1 43 1 0 4 3 0 10 chain 52911 chr2 243199373 + 96485008 96486773 L1PA10 4194 - 33 2743 19256 11 1 0 35 3 0 33 2 0 281 33 2 197 8 973 60 8 4 334 0 4 72 9 13 92 3 8 25 1 5 191 2 1 99 0 5 52 4 6 14 14 12 181 chain 230867 chr2 243199373 + 96486783 96489289 L1PA2 6032 - 1 2513 17262 1332 0 1 478 0 3 222 0 2 474 chain 72698 chr2 243199373 + 96489289 96490097 L1PA2 6032 + 2729 3535 46947 31 12 10 765 chain 46795 chr2 243199373 + 96490097 96491658 L1PA10 4194 - 2743 4019 19256 91 0 5 172 1 2 67 1 0 119 9 8 45 5 6 275 243 1 165 18 19 73 1 0 8 4 0 15 1 0 5 10 12 8 1 0 20 2 0 11 64 37 16 8 6 15 1 0 8 2 1 8 2 0 10 15 11 5 2 0 6 3 0 6 1 3 5 2 0 12 chain 6421 chr2 243199373 + 96490882 96490957 L1PA10 4194 + 589 664 181854 75 chain 59486 chr2 243199373 + 96523276 96524018 MER4E 760 + 0 749 53120 23 0 1 142 1 0 11 1 2 184 1 3 15 0 4 364 chain 551593 chr2 243199373 + 96535277 96541438 L1PA3long 6157 + 6 6157 1242 1243 1 0 1524 0 1 1305 10 0 2078 chain 23030 chr2 243199373 + 96542325 96542623 AluY 311 + 8 304 115489 115 1 0 9 0 1 97 11 10 8 1 0 56 chain 80602 chr2 243199373 + 96598519 96599556 L1PA7 6471 - 994 2037 43342 145 7 1 128 8 7 211 0 1 63 3 10 227 7 8 147 0 4 91 chain 72033 chr2 243199373 + 96599556 96600503 L1PA7 6471 + 5506 6460 47273 115 1 0 34 0 11 45 1 0 247 9 8 6 0 1 128 0 2 7 2 0 21 1 0 177 14 13 139 chain 71542 chr2 243199373 + 96611999 96612788 L1PA3long 6157 + 5340 6157 47678 711 0 27 73 0 1 5 chain 109406 chr2 243199373 + 96640846 96642076 L1PA4 6152 + 4459 5690 34343 135 6 7 250 0 1 526 1 0 312 chain 17717 chr2 243199373 + 96653353 96653541 AluYb8 318 - 3 191 133654 188 chain 292597 chr2 243199373 + 96663775 96667657 L1PA5 6144 - 7 5547 13853 154 2 1 515 1 0 986 0 1 4 1 0 23 0 1 99 0 12 147 79 2049 45 3 0 413 1 0 9 4 0 33 0 1 25 0 1 190 0 1 7 0 5 235 318 0 10 9 0 91 1 4 33 0 1 444 chain 515020 chr2 243199373 + 96705723 96711852 L1PA6 6164 - 11 6164 5672 481 3 0 66 9 10 749 0 2 908 10 9 144 9 6 73 3 2 461 0 4 44 1 2 222 1 2 550 1 0 91 2 3 464 0 4 419 0 3 215 8 11 115 0 3 237 0 1 31 0 17 222 1 0 15 1 0 152 13 7 408 chain 6067 chr2 243199373 + 96741997 96742094 L1MC1 2226 - 246 337 184676 66 1 0 18 5 0 7 chain 24807 chr2 243199373 + 96746099 96746593 L1PA15 4387 - 21 527 105854 11 1 0 23 1 0 5 3 0 8 11 7 18 23 38 39 2 1 12 4 0 19 14 13 42 1 0 26 9 8 154 10 22 14 0 1 11 12 13 21 chain 2765 chr2 243199373 + 96746597 96746626 U2 167 + 0 29 229230 29 chain 24008 chr2 243199373 + 96792325 96792609 AluSg 306 + 11 295 110282 284 chain 22357 chr2 243199373 + 96805547 96805860 AluSg4 309 + 4 302 118678 118 2 0 83 1 2 82 14 0 13 chain 48610 chr2 243199373 + 96825679 96826820 L1PA15 4387 + 3553 4366 60027 60 1 15 185 0 2 30 326 1 45 3 1 17 1 0 23 1 0 109 12 15 5 3 0 43 1 0 26 1 0 19 1 2 34 1 0 22 42 37 23 6 3 39 6 4 14 4 2 27 1 0 10 chain 9677 chr2 243199373 + 96833172 96833330 L1MB7 1623 + 1019 1179 162206 17 30 32 111 chain 24141 chr2 243199373 + 96842790 96843084 AluSc 308 + 11 304 109515 237 1 0 56 chain 25414 chr2 243199373 + 96848293 96848592 AluSp 311 + 1 301 102617 140 0 1 159 chain 3839 chr2 243199373 + 96863630 96863699 L1MB7 1623 - 130 187 209797 14 1 0 29 3 0 6 8 0 8 chain 25122 chr2 243199373 + 96882881 96883206 LTR17 781 - 457 781 104165 23 0 1 119 1 0 120 1 0 61 chain 232185 chr2 243199373 + 96883668 96886763 HERV17-int 4347 - 117 3443 17187 231 0 1 44 1 6 442 20 25 16 0 5 251 0 1 51 323 0 10 1 0 561 0 531 175 0 8 144 1 0 256 9 1 11 5 14 167 1 0 375 chain 37694 chr2 243199373 + 96888556 96889063 LTR17 781 - 0 526 72561 13 1 0 30 1 23 335 1 0 53 6 5 27 15 15 25 chain 3384 chr2 243199373 + 96894382 96894418 MSTC 436 - 6 42 217386 36 chain 24850 chr2 243199373 + 96938272 96938563 AluSp 311 + 6 297 105625 291 chain 2748 chr2 243199373 + 96960588 96960623 U2 167 + 0 34 229503 18 1 0 16 chain 7436 chr2 243199373 + 96978497 96978583 MER83 447 + 0 86 174541 86 chain 9052 chr2 243199373 + 97027980 97028085 Tigger1 2417 + 1584 1689 165307 105 chain 4833 chr2 243199373 + 97043892 97043953 MER82 654 + 203 264 196990 61 chain 560108 chr2 243199373 + 97044719 97050866 L1PA3long 6157 + 6 6157 348 567 1 5 5579 chain 7295 chr2 243199373 + 97075543 97075630 LTR35A 463 + 341 426 175479 6 2 0 79 chain 3817 chr2 243199373 + 97076201 97076243 LTR72 515 + 26 68 210132 42 chain 46169 chr2 243199373 + 97078484 97079038 MER41A 554 + 0 554 61875 554 chain 4415 chr2 243199373 + 97079561 97079613 LTR49 580 + 23 75 201731 52 chain 2941 chr2 243199373 + 97080950 97081000 MLT1B 390 - 16 67 226314 11 7 8 32 chain 453771 chr2 243199373 + 97082398 97088409 L1PA8 5853 - 5 5739 8625 88 1 0 19 2 1 51 1 0 7 1 0 74 2 0 46 1 0 99 4 0 283 7 10 82 0 1 77 2 0 327 1 0 278 4 0 149 9 8 450 0 1 97 0 2 47 0 8 256 1 0 161 6 5 18 0 1 73 1 2 160 0 2 77 1 0 149 1 2 65 0 2 464 0 1 67 289 0 56 0 2 5 7 8 35 13 6 261 0 1 172 0 2 193 1 17 192 1 0 13 0 1 304 0 7 132 0 1 422 19 7 187 chain 24871 chr2 243199373 + 97091475 97091829 THE1D 372 - 0 372 105514 35 2 1 87 10 16 40 8 11 107 0 10 65 chain 5645 chr2 243199373 + 97096595 97096691 MER52A 1651 + 778 908 188616 12 1 0 49 16 51 18 chain 5459 chr2 243199373 + 97100739 97100805 MER67C 710 - 94 160 190432 66 chain 494425 chr2 243199373 + 97106840 97112337 L1PA3long 6157 + 0 6157 7146 67 9 7 20 0 526 161 0 128 909 0 1 1054 1 0 2294 0 1 142 0 4 828 0 3 12 chain 32258 chr2 243199373 + 97112362 97112746 L1PA5 6144 + 5761 6142 80424 370 3 0 11 chain 16467 chr2 243199373 + 97118362 97118699 THE1C 375 + 0 336 137018 44 4 0 43 8 9 48 0 19 16 92 75 82 chain 461753 chr2 243199373 + 97120861 97128975 L1PA8 5853 + 108 5853 8341 190 23 11 226 0 1 102 0 3 195 0 1 23 3 10 887 7 8 261 3 0 264 0 1 584 1 0 271 0 3 36 0 1 203 5 6 180 0 2 8 2 1 4 1 0 614 0 1 43 0 3 5 12 11 63 7 5 674 2 0 449 5 1 105 1 0 43 3 1 71 1 0 8 4 3 4 0 1 48 1 0 17 2362 0 93 chain 165429 chr2 243199373 + 97126565 97128859 SVA_F 1814 + 9 1814 22603 207 1 0 672 498 0 59 0 15 39 1 0 4 1 0 172 1 0 4 1 0 398 1 0 235 chain 32321 chr2 243199373 + 97127446 97127833 SVA_F 1814 + 888 1291 80328 48 0 1 10 3 17 175 1 0 35 0 3 97 1 0 17 chain 7215 chr2 243199373 + 97127855 97127935 SVA_F 1814 + 962 1043 175971 76 0 1 4 chain 29103 chr2 243199373 + 97130931 97131343 L1PA8 5853 - 0 406 88535 93 1 0 19 6 5 36 13 12 9 1 0 71 15 13 31 1 0 48 0 1 68 chain 6189 chr2 243199373 + 97137062 97137160 L1MB3 1562 + 1060 1154 183656 25 14 10 59 chain 4240 chr2 243199373 + 97142115 97142176 MLT1C 463 - 339 401 204015 17 1 2 43 chain 22825 chr2 243199373 + 97206781 97207040 AluSc 308 - 17 276 116468 259 chain 7499 chr2 243199373 + 97211712 97211822 Tigger1 2417 + 2046 2155 174168 54 8 9 13 2 0 33 chain 4640 chr2 243199373 + 97243636 97243696 MIR 256 + 59 120 199186 23 1 2 36 chain 39953 chr2 243199373 + 97250805 97251481 L1PB2 3958 + 3150 3835 69390 111 0 1 6 8 12 29 2 0 49 0 3 16 5 0 11 1 0 4 1 2 30 28 27 40 15 17 60 0 9 40 1 0 62 1 0 43 1 2 31 25 24 56 chain 10826 chr2 243199373 + 97280566 97280690 L1PA4 6152 + 6031 6152 156886 115 3 0 6 chain 24434 chr2 243199373 + 97295060 97295343 AluSp 311 - 13 296 107888 283 chain 3523 chr2 243199373 + 97313234 97313299 MLT1M 334 - 162 284 215013 14 1 0 21 4 62 25 chain 26037 chr2 243199373 + 97343322 97343617 AluSp 311 + 2 297 99871 295 chain 10771 chr2 243199373 + 97386899 97388474 L1MB8 1703 - 115 412 157105 51 22 21 34 1382 105 86 chain 21033 chr2 243199373 + 97451557 97451852 AluY 311 + 1 303 123796 19 0 13 14 9 10 75 0 1 152 5 0 10 3 0 8 chain 67250 chr2 243199373 + 97471181 97471908 SVA_F 1814 - 1 725 49543 626 1 0 17 2 0 81 chain 3656 chr2 243199373 + 97500419 97500562 L1MD3 1191 - 41 192 212643 19 2 0 29 76 86 17 chain 18872 chr2 243199373 + 97511255 97511498 AluSp 311 - 7 251 130446 151 14 15 78 chain 4038 chr2 243199373 + 97588386 97588433 MER41B 635 + 511 558 206809 47 chain 5120 chr2 243199373 + 97641307 97641377 L1MA4 2864 - 55 123 193868 43 3 1 24 chain 5460 chr2 243199373 + 97647057 97647122 U13 108 - 42 108 190409 60 0 1 5 chain 25284 chr2 243199373 + 97666375 97666724 L1PA8 5853 - 6 346 103294 87 1 0 16 1 0 56 1 0 9 4 1 5 1 0 7 0 1 57 2 0 38 11 10 53 chain 2610 chr2 243199373 + 97668766 97668889 L1MB7 1623 - 132 232 231558 13 2 1 22 70 48 16 chain 14339 chr2 243199373 + 97680135 97680666 LTR12D 1347 + 587 1153 143432 26 0 4 57 78 0 20 0 17 41 177 202 46 61 128 25 chain 32754 chr2 243199373 + 97717768 97718147 L1PA4 6152 - 95 474 79608 379 chain 9244 chr2 243199373 + 97718147 97718248 L1PA4 6152 + 6050 6151 164331 101 chain 107195 chr2 243199373 + 97740091 97741596 L1PA11 4918 - 340 1810 34917 11 2 0 12 2 1 13 32 22 11 14 10 9 1 0 15 3 0 25 2 1 41 2 0 13 7 6 46 6 11 343 0 4 253 7 8 31 21 0 440 0 1 143 chain 20672 chr2 243199373 + 97761786 97762079 AluY 311 + 0 309 125066 48 17 20 58 0 1 119 4 16 47 chain 291839 chr2 243199373 + 97769264 97773154 L1PA5 6144 + 604 6139 13915 97 1 2 338 0 1 34 0 3 93 9 0 8 316 0 229 0 5 18 0 1 185 0 1 25 0 1 33 4 0 9 1 0 413 3 0 45 79 2049 1082 0 1 5 1 0 12 1 0 178 1 0 208 8 5 78 1 0 4 0 2 213 2 1 156 chain 109726 chr2 243199373 + 97794670 97795900 L1PA4 6152 - 462 1693 34274 235 2 0 81 0 2 521 0 1 391 chain 37758 chr2 243199373 + 97795900 97796320 L1PA4 6152 + 5708 6128 72477 420 chain 73554 chr2 243199373 + 97821959 97822777 L1PA3long 6157 - 0 817 46761 760 2 1 56 chain 71601 chr2 243199373 + 97834205 97835157 L1PA7 6471 - 11 971 47656 139 14 13 198 2 0 7 0 2 128 0 1 6 9 8 255 19 18 19 0 11 34 1 0 121 chain 130643 chr2 243199373 + 97836011 97837450 L1PA2 6032 + 4587 6031 27934 217 7 3 81 0 7 187 0 2 947 chain 215268 chr2 243199373 + 97840281 97842645 L1PA2 6032 - 1922 4288 18148 902 0 2 643 0 1 371 1 0 447 chain 175202 chr2 243199373 + 97842645 97844573 L1PA2 6032 + 4098 6027 21434 686 0 1 1242 chain 143265 chr2 243199373 + 97886513 97888055 L1HS 6032 - 0 1542 25603 1542 chain 548755 chr2 243199373 + 97891364 97897516 L1PA3long 6157 - 0 6151 1607 451 0 1 1380 0 1 245 10 0 2837 1 0 752 0 8 476 chain 60300 chr2 243199373 + 97908804 97909546 MER4E 760 - 11 760 52682 364 0 4 18 0 2 182 1 2 11 1 0 150 0 1 15 chain 6207 chr2 243199373 + 97942652 97942727 L1PA10 4194 - 3530 3605 183528 75 chain 179729 chr2 243199373 + 97942727 97945274 L1PA10 4194 + 661 4161 21016 275 5 6 45 9 8 119 1 0 241 0 5 272 14 12 14 4 6 55 0 5 113 8 10 165 1 5 25 3 8 78 23 27 72 0 4 334 9 4 60 1 967 179 34 0 23 0 3 281 12 11 22 12 9 26 1 0 11 chain 38438 chr2 243199373 + 97948643 97949289 L1PREC2 3366 - 502 1121 71530 10 3 0 4 1 0 43 2 1 43 0 1 10 2 0 5 2 0 63 20 21 126 13 5 48 0 1 4 1 0 4 4 0 24 26 31 58 0 3 90 10 0 9 6 0 15 chain 73312 chr2 243199373 + 97959611 97960426 L1PA5 6144 - 1357 2176 46790 442 0 4 373 chain 120358 chr2 243199373 + 97960426 97961786 L1PA5 6144 + 4779 6139 30918 1360 chain 104975 chr2 243199373 + 97973040 97974544 L1PA11 4918 + 3108 4578 35504 143 0 1 440 25 5 26 7 8 239 14 18 343 3 7 8 0 1 41 7 6 13 2 0 46 1 0 21 3 0 15 1 0 9 14 10 11 32 22 13 2 1 12 2 0 11 chain 32848 chr2 243199373 + 97995344 97995723 L1PA4 6152 + 5678 6057 79461 379 chain 4765 chr2 243199373 + 98021086 98021177 MSTD 398 + 41 132 197751 36 20 20 35 chain 25540 chr2 243199373 + 98021799 98022150 MER51B 395 - 0 395 102056 79 0 20 51 1 0 142 0 6 31 13 32 34 chain 32848 chr2 243199373 + 98043168 98043547 L1PA4 6152 - 95 474 79462 379 chain 9244 chr2 243199373 + 98043547 98043648 L1PA4 6152 + 6050 6151 164330 101 chain 103612 chr2 243199373 + 98064349 98065853 L1PA11 4918 - 340 1810 35829 11 2 0 12 2 1 13 32 22 11 14 10 10 1 0 14 3 0 25 2 1 38 25 22 46 6 11 343 14 18 239 7 8 26 25 5 440 0 1 143 chain 120705 chr2 243199373 + 98077117 98078477 L1PA5 6144 - 5 1365 30795 1360 chain 73312 chr2 243199373 + 98078477 98079292 L1PA5 6144 + 3968 4787 46789 376 0 4 439 chain 38413 chr2 243199373 + 98090002 98090648 L1PREC2 3366 + 2245 2864 71559 15 6 0 9 10 0 90 0 3 58 26 31 28 5 0 4 0 1 48 13 5 126 20 21 63 2 0 5 2 0 10 0 1 43 2 1 43 1 0 4 3 0 10 chain 179729 chr2 243199373 + 98094003 98096550 L1PA10 4194 - 33 3533 21017 11 1 0 26 12 9 22 12 11 281 0 3 20 34 0 182 1 967 60 9 4 334 0 4 72 23 27 78 3 8 25 1 5 165 8 10 113 0 5 55 4 6 14 14 12 276 0 5 237 1 0 119 9 8 45 5 6 275 chain 6207 chr2 243199373 + 98096550 98096625 L1PA10 4194 + 589 664 183527 75 chain 59905 chr2 243199373 + 98129862 98130604 MER4E 760 + 0 749 52873 17 0 1 148 1 0 11 1 2 182 0 2 18 0 4 364 chain 550291 chr2 243199373 + 98141883 98148029 L1PA3long 6157 + 6 6157 1406 708 1 2 42 0 1 1586 0 1 38 0 1 1231 0 1 2540 chain 21121 chr2 243199373 + 98148911 98149204 AluY 311 + 8 299 123480 115 1 0 9 6 7 91 11 10 8 1 0 51 chain 37236 chr2 243199373 + 98189395 98189821 L1PA4 6152 - 12 444 73190 6 0 6 420 chain 111372 chr2 243199373 + 98189821 98191051 L1PA4 6152 + 4459 5690 33843 392 0 1 838 chain 498252 chr2 243199373 + 98212498 98218661 L1PA5 6144 - 5 6143 6940 156 2 1 515 1 0 185 1 0 5 0 1 1363 1 0 150 18 15 527 0 4 1378 1 5 134 0 1 222 0 1 56 0 3 182 28 0 35 12 15 16 13 4 82 0 3 129 25 0 83 0 1 44 0 17 205 2 1 18 1 0 48 10 11 94 26 20 198 1 0 77 1 15 118 chain 70590 chr2 243199373 + 98248298 98249226 L1MA2 4263 - 1034 1963 48116 157 1 0 299 1 2 4 1 0 79 0 5 39 2 0 120 0 2 9 10 8 117 1 0 88 chain 9746 chr2 243199373 + 98281051 98281169 U4 144 - 1 119 161861 118 chain 3823 chr2 243199373 + 98283327 98283373 MER41D 557 - 500 546 210043 46 chain 22530 chr2 243199373 + 98298054 98298329 AluY 311 + 15 292 117894 117 0 1 126 10 11 22 chain 6991 chr2 243199373 + 98301260 98301352 L1MB4 1306 + 718 811 177532 16 0 1 76 chain 26612 chr2 243199373 + 98326792 98327090 AluYk4 311 + 0 300 97624 96 0 2 202 chain 36870 chr2 243199373 + 98437557 98438074 LTR12 884 + 2 740 73695 23 1 0 30 0 41 22 0 25 38 0 25 25 0 4 82 25 0 11 0 49 217 0 103 43 chain 407537 chr2 243199373 + 98438130 98442959 HERV9-int 5642 + 0 4825 9863 164 0 4 141 4 6 253 0 2 27 10 7 112 6 0 75 1 0 26 2 3 274 11 9 193 0 1 280 0 1 5 1 0 382 1 0 402 0 4 854 7 0 544 0 3 862 2 0 178 0 1 12 chain 45603 chr2 243199373 + 98445636 98446254 LTR12 884 + 0 884 62400 24 1 0 264 1 3 30 0 25 30 2 0 26 5 6 6 2 0 47 0 4 44 0 3 85 0 236 51 chain 507404 chr2 243199373 + 98488933 98495319 L1PA7 6471 + 0 6467 6373 88 0 22 129 4 5 6 0 7 132 17 14 70 1 0 101 3 0 102 13 6 60 10 15 63 0 1 130 1 0 4 1 2 256 0 4 14 0 4 17 16 35 46 0 2 68 0 1 151 1 0 837 0 3 13 1 2 86 0 1 78 0 3 52 2 4 216 2 0 386 6 7 254 1 0 25 1 0 6 0 1 42 0 12 252 0 1 142 0 1 101 0 5 50 5 4 452 3 0 102 0 1 109 1 0 815 6 10 39 0 2 403 0 3 386 2 0 6 chain 308750 chr2 243199373 + 98509365 98513152 L1PA7 6471 - 4 3831 13056 166 0 6 666 0 6 20 0 4 37 0 4 226 2 1 152 1 0 247 1 0 130 1 0 108 0 1 22 6 14 28 5 8 555 0 1 86 0 1 5 0 1 322 2 1 93 5 9 18 0 1 6 1 0 279 6 7 132 0 4 228 1 2 230 chain 23115 chr2 243199373 + 98540269 98540554 AluY 311 + 0 294 115060 16 1 9 107 0 1 161 chain 379741 chr2 243199373 + 98554273 98558951 L1PA5 6144 + 1758 6144 10761 79 0 4 174 1 0 436 0 1 806 0 2 62 0 2 349 2 4 47 0 1 405 1 2 29 1 0 94 0 3 83 0 4 147 310 3 1487 2 1 149 3 1 11 chain 6601 chr2 243199373 + 98568785 98568941 L1MDa 1598 + 856 1033 180442 19 34 47 37 0 4 27 16 20 23 chain 49485 chr2 243199373 + 98581383 98581970 LTR14C 587 + 0 587 59400 587 chain 6331 chr2 243199373 + 98599777 98599856 MER4D 903 - 753 831 182531 40 1 0 38 chain 19375 chr2 243199373 + 98639708 98640042 MER1B 344 + 1 344 129008 77 31 35 148 0 1 4 42 46 32 chain 24716 chr2 243199373 + 98647529 98647915 LTR7 482 - 13 482 106348 64 0 1 98 0 1 6 25 68 7 12 0 56 17 67 101 chain 44325 chr2 243199373 + 98650232 98650893 MER4A 717 + 0 717 63797 43 0 1 79 4 0 137 0 13 97 0 40 46 18 1 18 10 35 81 0 9 5 9 0 37 10 9 60 1 0 6 chain 28951 chr2 243199373 + 98651048 98651570 LTR21A 479 - 0 479 89217 19 2 0 5 18 12 4 1 0 9 5 9 16 7 6 13 0 1 128 6 0 59 1 2 97 9 8 24 0 2 8 9 6 18 30 0 13 1 0 20 chain 36310 chr2 243199373 + 98661015 98661569 LTR7B 505 - 0 505 74492 175 6 5 29 0 33 12 0 22 19 102 0 175 1 0 35 chain 48533 chr2 243199373 + 98662618 98663172 MER41A 554 + 0 554 60083 554 chain 21076 chr2 243199373 + 98664492 98664745 AluSp 311 - 23 276 123638 253 chain 9952 chr2 243199373 + 98669046 98669202 PABL_A-int 1935 + 1708 1870 160826 19 1 0 7 6 10 17 2 0 30 0 7 39 1 0 18 1 0 15 chain 45172 chr2 243199373 + 98669893 98670455 MER41A 554 + 0 554 62849 63 0 1 373 9 0 117 chain 5033 chr2 243199373 + 98676664 98676722 MER50 708 + 627 685 194794 58 chain 137328 chr2 243199373 + 98677278 98678785 L1PA3long 6157 - 11 1518 26584 1507 chain 20151 chr2 243199373 + 98691040 98691364 MSTA-int 1630 - 0 330 126673 112 1 7 78 1 0 29 47 48 56 chain 257546 chr2 243199373 + 98691364 98694248 L1PA5 6144 + 3253 6126 15843 422 2 0 1103 0 1 511 2 0 128 0 1 563 2 1 13 0 1 19 9 0 110 chain 3425 chr2 243199373 + 98697062 98697204 MSTB2 466 - 230 393 216658 21 89 110 32 chain 37160 chr2 243199373 + 98713832 98714401 L1PB3 3668 - 102 646 73296 37 3 1 25 1 0 8 2 0 28 9 0 76 1 0 51 9 1 48 1 0 50 0 7 13 11 2 171 0 1 25 chain 56518 chr2 243199373 + 98718336 98719034 SVA_A 1864 - 1 1376 54841 536 40 715 34 0 2 88 chain 19953 chr2 243199373 + 98731677 98731914 L1PA6 6164 + 5925 6162 127292 237 chain 25985 chr2 243199373 + 98734917 98735208 LTR17 781 + 34 325 100075 291 chain 81453 chr2 243199373 + 98746349 98747286 LTR5_Hs 974 - 0 962 42986 80 0 6 18 6 5 85 0 19 475 0 1 273 chain 29450 chr2 243199373 + 98751788 98752097 AluYa5 310 - 1 310 86839 309 chain 120671 chr2 243199373 + 98755284 98756710 LTR12C 1709 + 0 1709 30811 35 0 1 400 0 1 213 0 278 184 1 0 4 4 2 106 0 4 86 4 6 69 0 1 4 1 0 315 chain 32268 chr2 243199373 + 98764162 98764545 L1PA5 6144 - 2 371 80409 7 5 0 215 10 1 146 chain 44596 chr2 243199373 + 98836980 98837597 L1PA8 5853 + 5259 5853 63483 153 23 5 147 1 0 44 2 0 71 2 0 19 4 6 36 2 1 15 6 5 92 chain 185676 chr2 243199373 + 98881830 98883850 L1PA3long 6157 - 322 2340 20446 899 1 0 1049 1 0 70 chain 91868 chr2 243199373 + 98883850 98884865 L1PA3long 6157 + 2841 3856 38842 1015 chain 38932 chr2 243199373 + 98915104 98915746 MER51C 639 - 28 639 70825 11 0 5 26 11 7 307 1 2 116 71 0 9 8 54 23 17 9 42 chain 49614 chr2 243199373 + 98923617 98924180 LTR10C 591 - 28 591 59307 563 chain 32729 chr2 243199373 + 98933770 98934346 MER4B 649 + 1 641 79643 30 2 0 10 83 84 18 0 29 27 1 24 110 8 23 122 2 1 85 1 0 15 0 1 54 1 0 7 chain 19527 chr2 243199373 + 98938303 98938594 THE1B 368 + 0 297 128578 140 0 1 22 7 6 11 0 1 17 0 3 7 1 5 10 12 11 4 1 0 59 chain 27588 chr2 243199373 + 98967725 98968074 THE1B 368 + 0 368 94388 44 0 15 117 5 4 62 0 5 121 chain 3499 chr2 243199373 + 98969695 98969737 MLT2B2 565 + 516 558 215373 42 chain 181094 chr2 243199373 + 98979548 98982833 L1PA10 4194 - 33 4019 20890 11 1 0 34 3 0 135 3 1 4 0 1 26 0 4 152 0 3 24 1 14 86 7 129 90 27 1 35 32 1280 302 0 2 24 324 0 394 1 5 231 294 0 293 1 0 93 0 11 292 5 4 75 24 13 12 0 1 4 21 22 18 2 0 11 56 30 8 1 0 15 2 0 13 69 56 12 2 0 15 chain 21980 chr2 243199373 + 99002760 99003098 THE1B 368 + 9 368 120315 59 12 14 45 0 12 29 2 1 21 2 6 17 1 5 14 1 0 9 1 0 45 0 2 80 chain 24446 chr2 243199373 + 99025646 99025936 AluSp 311 - 19 311 107827 267 0 2 23 chain 22256 chr2 243199373 + 99034157 99034512 THE1B 368 - 0 364 119099 115 40 51 4 1 0 13 14 13 168 chain 30495 chr2 243199373 + 99038068 99038479 LTR7 482 + 0 482 83439 54 23 61 109 0 1 33 0 1 4 1 32 187 chain 45041 chr2 243199373 + 99047555 99048068 MER9a1 513 - 0 513 63005 513 chain 98888 chr2 243199373 + 99050160 99051788 MER61-int 3695 + 1760 3434 37054 105 26 29 24 2 0 219 19 20 14 6 1 16 0 1 4 14 21 103 5 7 281 7 6 150 0 5 95 91 101 20 0 4 7 44 39 61 12 29 30 7 6 8 0 7 10 1 3 135 10 11 12 1 0 27 6 7 56 chain 48758 chr2 243199373 + 99051788 99052711 MER11C 1089 + 0 1052 59903 55 0 91 115 1 4 195 8 11 6 4 0 22 187 178 30 85 129 46 0 1 169 chain 34469 chr2 243199373 + 99058054 99058514 LTR2 463 - 0 463 76958 27 5 6 55 15 16 90 0 1 268 chain 33812 chr2 243199373 + 99058792 99059300 MER4C 627 - 0 627 77922 26 5 7 68 9 0 82 1 105 19 0 25 12 0 1 66 13 12 114 0 1 10 3 0 53 1 0 26 chain 23681 chr2 243199373 + 99059591 99059866 AluSp 311 + 1 277 112145 140 0 1 135 chain 23786 chr2 243199373 + 99064252 99064532 AluY 311 + 24 305 111552 108 0 1 172 chain 32781 chr2 243199373 + 99114222 99114607 THE1B-int 1605 + 1222 1605 79562 4 1 0 341 1 0 38 chain 6139 chr2 243199373 + 99149198 99149302 Tigger3b 1229 - 1104 1208 184093 60 12 13 26 1 0 5 chain 92189 chr2 243199373 + 99210858 99211871 L1PA2 6032 - 276 1290 38904 380 0 1 36 4 0 159 0 4 434 chain 26206 chr2 243199373 + 99211871 99212154 L1PA2 6032 + 5743 6026 99177 283 chain 35769 chr2 243199373 + 99227594 99228140 MER4A 717 - 2 709 75176 4 1 0 6 0 1 9 6 10 159 12 28 210 37 174 7 0 4 95 chain 26193 chr2 243199373 + 99257836 99258163 AluY 311 + 0 307 99225 126 16 0 31 4 0 150 chain 28881 chr2 243199373 + 99283378 99283733 THE1B 368 + 0 368 89535 44 0 15 113 1 0 121 1 0 75 chain 120915 chr2 243199373 + 99283733 99285631 THE1B-int 1605 + 0 1605 30723 73 1 0 39 1 4 300 333 0 14 8 35 111 16 21 275 5 12 139 1 0 582 chain 25464 chr2 243199373 + 99285631 99285990 THE1B 368 + 0 368 102384 44 6 21 109 1 0 6 0 1 4 1 0 7 4 0 95 2 1 5 1 0 35 1 2 38 chain 2743 chr2 243199373 + 99307176 99307210 L1MDa 1598 + 461 494 229565 24 1 0 9 chain 29551 chr2 243199373 + 99322124 99322439 AluYb8 318 + 0 316 86411 177 0 1 138 chain 24917 chr2 243199373 + 99349108 99349452 THE1B 368 + 6 357 105238 55 1 3 108 2 1 18 1 3 112 6 10 41 chain 23789 chr2 243199373 + 99351974 99352254 AluSp 311 - 29 309 111536 280 chain 6513 chr2 243199373 + 99382278 99382397 L1MB8 1703 + 1470 1588 181135 28 31 30 60 chain 4787 chr2 243199373 + 99397245 99397302 LTR47A 437 + 331 388 197497 57 chain 11477 chr2 243199373 + 99398872 99399004 U4 144 + 0 132 154391 132 chain 5041 chr2 243199373 + 99423815 99423874 MER20 218 - 25 84 194721 59 chain 11689 chr2 243199373 + 99437958 99438160 MER30 238 - 1 238 153522 38 0 3 36 0 1 31 15 34 49 19 31 14 chain 4500 chr2 243199373 + 99457141 99457197 U7 62 - 4 60 200772 56 chain 3179 chr2 243199373 + 99489164 99489205 MER5A1 166 - 97 135 221376 32 3 0 6 chain 9580 chr2 243199373 + 99494263 99494384 Tigger3c 601 + 174 293 162700 89 2 0 30 chain 4884 chr2 243199373 + 99507051 99507202 Tigger4a 237 - 8 159 196442 42 58 73 10 15 0 26 chain 15178 chr2 243199373 + 99513179 99513381 MER107 203 - 0 203 140831 16 8 11 154 3 1 21 chain 5611 chr2 243199373 + 99521248 99521330 MSTB 430 + 0 80 188968 15 2 1 10 1 0 54 chain 9019 chr2 243199373 + 99556794 99556916 MER85 139 + 6 139 165499 90 5 16 27 chain 22323 chr2 243199373 + 99571131 99571398 AluSc8 310 + 10 294 118810 34 0 16 74 0 1 159 chain 184270 chr2 243199373 + 99579630 99582203 L1PREC2 3366 - 625 3215 20563 24 0 1 149 0 4 52 10 5 144 2 1 20 15 15 209 5 0 149 0 1 50 0 6 131 6 14 81 0 1 48 6 7 53 15 20 190 0 2 53 2 1 35 8 11 308 4 8 75 2 0 6 4 6 166 0 1 41 0 4 180 3 4 65 0 1 110 6 5 27 2 0 10 1 0 13 1 0 25 1 0 4 10 5 20 3 1 9 1 0 19 chain 539600 chr2 243199373 + 99594317 99600471 L1PA4 6152 + 25 6143 2881 281 6 15 909 6 8 472 1 2 431 47 0 219 0 1 90 2 0 188 1 0 1209 2 1 2125 0 2 165 chain 176945 chr2 243199373 + 99603572 99607200 L1PA4 6152 - 9 2013 21256 1033 1628 0 758 0 4 209 chain 135655 chr2 243199373 + 99604654 99606194 SVA_C 1631 - 12 1631 26901 669 1 0 40 1 0 52 6 1 173 0 76 573 0 8 13 0 3 7 1 0 4 chain 22771 chr2 243199373 + 99607200 99607471 L1PA4 6152 + 1674 1939 115911 140 14 8 117 chain 45860 chr2 243199373 + 99607471 99607978 L1PA4 6152 + 1940 2453 62169 459 0 6 48 chain 124085 chr2 243199373 + 99607980 99609378 L1PA4 6152 + 2453 3850 29671 710 1 0 38 3 2 89 0 1 557 chain 23836 chr2 243199373 + 99609380 99609661 L1PA4 6152 + 3851 4131 111272 86 1 2 160 2 0 32 chain 292487 chr2 243199373 + 99617001 99620894 L1P2 5180 + 2 3627 13863 148 2 1 62 4 34 104 0 1 39 11 0 8 0 11 87 15 14 4 1 0 272 0 15 210 1 0 709 0 1 595 11 5 31 304 0 111 4 0 344 4 0 111 0 4 203 0 3 498 chain 23552 chr2 243199373 + 99619325 99619601 AluSg7 307 - 12 289 112838 168 0 1 108 chain 252084 chr2 243199373 + 99620894 99623756 L1PA5 6144 + 3270 6135 16125 788 0 1 1228 1 0 524 7 10 314 chain 219839 chr2 243199373 + 99630847 99633946 L1PB1 5432 + 2210 5284 17890 68 2 0 412 0 2 5 2 0 215 1 0 380 34 25 53 1 2 123 13 19 213 23 10 117 0 6 101 0 1 32 8 14 296 0 1 18 0 1 231 16 17 38 0 1 16 3 0 3 7 0 139 1 0 42 2 3 33 10 6 250 15 13 22 1 0 6 1 0 14 5 1 9 3 1 51 2 1 39 0 1 23 chain 21554 chr2 243199373 + 99643312 99643597 MER1B 344 - 0 284 121951 63 12 15 46 4 0 160 chain 172418 chr2 243199373 + 99648120 99650654 Charlie3 2679 + 18 2277 21769 16 2 1 138 0 1 13 11 13 548 0 2 33 1 0 148 2 1 139 24 25 57 1 0 214 0 1 65 31 30 318 1 3 151 279 0 342 chain 178387 chr2 243199373 + 99654344 99656788 L1PBa 3878 + 1246 3732 21129 156 0 1 57 0 4 150 2 0 41 0 2 156 0 1 32 6 5 174 1 2 64 0 17 480 0 8 96 0 4 18 11 0 31 0 4 221 0 37 25 18 13 8 23 0 39 0 4 11 1 4 109 3 0 231 1 0 4 0 1 105 11 13 140 1 0 18 chain 33326 chr2 243199373 + 99660298 99660706 L1P2 5180 + 1797 2207 78694 185 0 1 4 1 2 218 chain 33421 chr2 243199373 + 99660706 99661155 L1P2 5180 + 2211 2652 78530 116 10 1 182 2 3 139 chain 46451 chr2 243199373 + 99661155 99661696 L1P2 5180 + 2655 3196 61638 541 chain 368553 chr2 243199373 + 99661698 99666202 L1PA7 6471 + 1956 6467 11137 177 5 6 380 0 2 76 13 21 20 2 3 45 0 1 442 4 5 876 12 11 414 0 4 516 1 0 161 9 1 366 0 1 138 6 4 72 0 2 759 2 0 8 chain 23129 chr2 243199373 + 99668947 99669216 AluY 311 + 28 295 114998 104 0 1 151 3 0 11 chain 46529 chr2 243199373 + 99698420 99698995 LTR6A 649 + 68 649 61571 36 1 0 239 2 8 34 2 1 53 0 1 75 0 1 133 chain 14864 chr2 243199373 + 99704719 99704963 MER44A 345 + 112 344 141738 27 9 12 7 10 0 97 2 0 16 9 6 67 chain 377549 chr2 243199373 + 99706430 99711855 L1PB1 5432 + 11 5427 10832 11 6 0 187 0 1 30 2 0 66 4 3 149 19 9 50 0 1 5 9 8 13 0 1 83 11 15 123 4 3 62 6 7 388 0 4 59 1 0 7 0 1 42 0 1 47 52 23 121 0 3 146 0 1 98 30 63 110 16 4 516 0 5 9 0 1 4 6 0 7 15 20 55 5 9 214 50 66 67 0 4 47 1 0 27 0 1 326 2 1 146 1 5 655 0 1 69 1 0 243 10 13 153 4 1 167 1 0 16 13 12 22 0 1 87 6 9 75 7 9 84 1 2 9 3 0 9 12 11 12 1 0 4 13 9 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 17 6 19 2 0 5 1 0 14 6 4 20 1 0 7 12 14 13 1 0 18 2 0 5 chain 450267 chr2 243199373 + 99746232 99751843 L1PA7 6471 - 132 5808 8760 25 7 6 191 0 1 123 7 12 98 8 10 151 0 3 19 0 2 72 6 5 94 0 2 65 0 1 342 13 1 186 1 12 240 0 4 165 0 1 364 8 6 207 1 0 102 2 0 83 19 17 143 0 16 22 0 4 304 1 5 30 0 1 14 19 28 62 0 4 43 0 1 153 6 10 101 0 1 88 1 0 58 0 1 309 1 3 448 5 7 22 0 3 11 1 0 133 0 2 146 1 2 259 14 5 50 0 5 98 11 4 191 7 19 260 chain 29016 chr2 243199373 + 99752979 99753290 AluYa5 310 + 1 310 88919 131 2 0 178 chain 7732 chr2 243199373 + 99793162 99793254 MER30 238 + 135 227 172696 92 chain 15400 chr2 243199373 + 99794382 99794748 L1MA6 2487 - 85 393 140200 4 1 0 19 3 0 38 108 70 32 33 17 128 chain 6982 chr2 243199373 + 99806253 99806365 L1MB3 1562 - 10 120 177592 18 11 10 56 1 0 26 chain 43086 chr2 243199373 + 99808768 99809325 L1PA8 5853 - 32 624 65310 61 1 0 19 2 1 33 0 4 8 9 45 42 2 0 44 2 1 334 chain 43076 chr2 243199373 + 99809325 99809834 L1PA8 5853 + 4730 5241 65325 257 0 4 19 2 0 231 chain 24714 chr2 243199373 + 99830044 99830397 THE1B 368 + 0 368 106365 44 24 39 82 8 7 6 0 1 189 chain 36191 chr2 243199373 + 99837146 99837680 L1PREC2 3366 + 1873 2406 74639 71 3 4 84 4 0 25 1 2 250 46 47 50 chain 14253 chr2 243199373 + 99837699 99837877 L1PREC2 3366 - 1504 1683 143708 120 0 1 58 chain 21728 chr2 243199373 + 99839701 99839975 AluSp 311 + 38 311 121287 227 6 5 41 chain 165685 chr2 243199373 + 99842290 99844116 L1PA4 6152 - 1918 3749 22556 1526 0 5 300 chain 138922 chr2 243199373 + 99844116 99845656 L1PA4 6152 + 4235 5777 26301 640 0 1 429 0 1 471 chain 33808 chr2 243199373 + 99845656 99846032 L1PA4 6152 + 5779 6151 77927 224 4 0 148 chain 200124 chr2 243199373 + 99850065 99852752 L1PA7 6471 + 4089 6460 19198 398 0 1 119 0 2 346 1 0 394 1 0 271 2 1 339 2 0 134 314 0 147 1 0 66 1 2 151 chain 94731 chr2 243199373 + 99864175 99865206 L1PA3long 6157 + 5127 6157 38156 763 2 1 266 chain 68325 chr2 243199373 + 99881624 99882773 L1PB1 5432 - 2 1065 49113 4 1 0 4 1 0 18 1 0 12 1 0 22 1 0 24 2 0 9 14 11 18 18 7 5 1 0 15 1 0 42 5 4 11 7 6 50 2 0 9 2 0 3 2 0 12 6 4 26 109 53 254 5 3 174 5 2 104 0 4 7 1 5 141 chain 110794 chr2 243199373 + 99882774 99884281 MER4-int 2692 + 1204 2692 34005 112 0 1 99 3 4 47 14 19 18 9 4 34 4 8 60 1 2 34 0 3 28 0 1 104 1 0 234 0 7 99 0 2 120 6 0 86 5 13 59 43 3 287 chain 39058 chr2 243199373 + 99884289 99884759 MER4A1 472 + 0 472 70653 14 1 3 455 chain 34870 chr2 243199373 + 99887143 99887623 MER9a3 513 - 0 512 76381 77 1 2 129 1 11 19 0 17 68 10 11 68 0 1 90 0 2 17 chain 384412 chr2 243199373 + 99887624 99892551 HERVK9-int 4720 - 0 4684 10633 10 0 1 8 1 0 807 207 0 455 0 2 21 34 0 21 0 2 87 1 0 6 0 1 2071 0 1 5 1 0 480 0 1 214 1 0 214 18 19 120 13 12 30 1 0 5 7 6 64 12 8 13 chain 57280 chr2 243199373 + 99892898 99893563 L1PA6 6164 + 5498 6161 54347 451 0 1 204 3 0 7 chain 35394 chr2 243199373 + 99894554 99895036 MER9a3 513 - 0 513 75681 62 2 0 14 0 1 131 1 11 19 0 18 67 10 11 68 0 1 95 0 2 13 chain 10734 chr2 243199373 + 99896213 99896354 MER30 238 + 74 238 157261 25 1 23 85 0 1 30 chain 6813 chr2 243199373 + 99901426 99901524 LTR43B 570 + 0 100 178855 37 1 2 40 1 2 19 chain 5887 chr2 243199373 + 99920511 99920579 THE1B-int 1605 + 1525 1593 186312 68 chain 8843 chr2 243199373 + 99941577 99941707 L1MA3 4352 + 4191 4317 166411 67 2 0 25 7 5 29 chain 6072 chr2 243199373 + 99963874 99963963 MER5A1 166 - 4 104 184638 14 2 14 52 1 0 20 chain 22813 chr2 243199373 + 99978885 99979167 AluY 311 + 0 288 116515 53 1 5 70 1 3 157 chain 10021 chr2 243199373 + 99992569 99992734 MER30 238 + 65 238 160479 26 1 4 5 1 0 8 4 18 31 8 0 81 chain 21981 chr2 243199373 + 100000426 100000673 AluYc 301 + 36 285 120308 83 1 3 163 chain 23505 chr2 243199373 + 100045186 100045474 AluY 311 + 11 303 113100 61 4 10 36 2 0 185 chain 3134 chr2 243199373 + 100069418 100069457 MIR 256 + 111 150 222281 39 chain 6660 chr2 243199373 + 100073744 100073829 L1MD1 2063 + 881 964 179997 78 2 0 5 chain 7500 chr2 243199373 + 100076466 100076554 MER101 471 + 375 463 174157 88 chain 22828 chr2 243199373 + 100086329 100086596 AluY 311 + 28 296 116449 104 0 1 163 chain 50751 chr2 243199373 + 100086823 100087415 LTR10C 591 + 0 589 58464 30 0 2 302 9 4 251 chain 42899 chr2 243199373 + 100091493 100092010 LTR10C 591 - 0 591 65542 82 0 2 267 0 1 61 0 72 93 1 0 13 chain 2918 chr2 243199373 + 100093659 100093721 MLT1J 494 + 96 157 226725 15 20 19 27 chain 18417 chr2 243199373 + 100109867 100110207 THE1D 372 - 47 372 131723 53 2 1 37 0 6 35 24 27 87 20 24 10 27 0 45 chain 4400 chr2 243199373 + 100110903 100110958 MER119 576 - 0 55 201935 55 chain 35921 chr2 243199373 + 100113180 100113642 LTR10F 562 + 0 562 74988 102 26 67 21 0 28 13 0 31 300 chain 192823 chr2 243199373 + 100117397 100120439 HERVIP10FH-int 2884 + 149 2876 19784 17 0 2 45 8 0 186 14 14 13 0 1 93 8 13 146 0 1 700 322 1 7 3 0 11 1 0 7 1 0 62 5 0 116 11 220 246 1 0 215 20 0 9 1 0 181 3 4 209 0 3 34 1 0 51 1 0 16 1 0 13 10 4 35 196 31 16 2 0 5 chain 36392 chr2 243199373 + 100120497 100120963 LTR10F 562 + 0 554 74374 107 1 29 25 6 62 5 0 3 185 0 1 137 chain 3190 chr2 243199373 + 100137561 100137599 MER20 218 + 180 218 221101 38 chain 41080 chr2 243199373 + 100138858 100140039 LTR19B 566 - 0 566 67795 32 0 1 19 0 3 11 1 3 27 27 26 171 2 0 45 2 0 45 0 1 88 617 0 94 chain 13632 chr2 243199373 + 100173741 100173905 AluSz6 309 - 9 173 145844 164 chain 20923 chr2 243199373 + 100204670 100204918 AluJb 308 - 40 287 124199 135 1 0 112 chain 24251 chr2 243199373 + 100205859 100206150 AluSc 308 - 6 298 108937 170 0 1 121 chain 6295 chr2 243199373 + 100225560 100225627 MER41A 554 - 86 153 182849 67 chain 17891 chr2 243199373 + 100225719 100226100 L1PB1 5432 - 14 361 133130 13 2 1 13 1 0 21 1 0 24 2 0 8 14 11 16 9 0 11 1 0 5 2 1 14 1 0 44 1 0 13 12 11 42 4 2 9 2 0 3 2 0 10 1 0 12 1 0 20 3 0 11 1 0 32 chain 33636 chr2 243199373 + 100244363 100245000 L1PA13 3608 - 86 704 78193 4 1 0 16 6 1 10 10 6 12 6 5 20 2 0 6 2 0 12 2 0 34 2 0 10 1 0 27 1 0 24 1 0 60 6 4 18 78 82 10 1 0 33 1 0 19 0 4 132 1 0 69 chain 23356 chr2 243199373 + 100336230 100336503 AluYc 301 + 0 276 113894 24 0 1 95 0 2 154 chain 120007 chr2 243199373 + 100356276 100357594 L1PA3long 6157 - 0 1330 31057 857 1 0 184 0 13 276 chain 67663 chr2 243199373 + 100357594 100358333 L1PA3long 6157 + 4058 4797 49265 739 chain 110319 chr2 243199373 + 100390153 100391561 L1PA11 4918 + 3132 4517 34117 271 11 5 311 6 0 297 1 0 315 11 5 46 0 3 8 2 1 11 4 3 67 2 0 13 1 0 19 2 0 10 chain 3293 chr2 243199373 + 100396209 100396244 L1PB4 2604 - 92 127 219108 35 chain 13367 chr2 243199373 + 100411555 100411813 L1PB4 2604 + 2306 2550 146824 65 33 15 55 10 7 26 4 10 16 6 7 43 chain 52517 chr2 243199373 + 100419165 100419838 L1PB3 3668 - 1552 2252 57290 375 0 8 121 0 6 86 0 13 91 chain 14255 chr2 243199373 + 100437827 100438053 MER30 238 - 0 214 143700 31 5 6 11 5 0 87 18 10 69 chain 86158 chr2 243199373 + 100445666 100446749 L1PA8 5853 + 4763 5853 41091 246 0 2 182 14 17 312 0 1 36 0 6 43 2 0 71 1 0 6 6 5 13 0 1 36 2 1 19 3 2 91 chain 5180 chr2 243199373 + 100450707 100450798 MIR 256 + 49 138 193224 46 20 18 25 chain 7301 chr2 243199373 + 100510467 100510605 MER85 139 - 0 139 175439 23 5 0 6 5 18 61 14 7 24 chain 112814 chr2 243199373 + 100524682 100526078 L1PA4 6152 + 4883 6152 33435 205 0 1 163 0 2 354 12 0 204 0 1 85 1 0 110 118 0 144 chain 5399 chr2 243199373 + 100525862 100525920 L1PA4 6152 + 5995 6053 190986 58 chain 27125 chr2 243199373 + 100544284 100544656 THE1B 368 + 0 368 95848 13 7 1 26 0 5 127 2 1 120 1 0 47 1 0 28 chain 18542 chr2 243199373 + 100545579 100545793 AluSp 311 + 72 286 131383 214 chain 14976 chr2 243199373 + 100548561 100548784 MER30 238 + 0 238 141395 15 13 14 79 4 21 70 3 0 39 chain 35994 chr2 243199373 + 100549802 100550281 L1PA8 5853 - 6 471 74902 87 7 6 13 2 1 52 1 0 9 11 3 68 2 0 46 1 0 180 chain 43577 chr2 243199373 + 100556763 100557316 MER41A 554 + 0 554 64711 92 0 1 91 10 11 147 0 1 118 13 12 77 1 0 4 chain 52993 chr2 243199373 + 100570806 100571387 L1PA3long 6157 + 5576 6157 57020 581 chain 26600 chr2 243199373 + 100598610 100598980 THE1B 368 + 0 368 97661 36 1 6 130 2 1 65 5 0 67 3 2 61 chain 132852 chr2 243199373 + 100641689 100643529 L1PB1 5432 + 3644 5420 27453 318 0 1 636 4 6 12 7 4 416 22 22 44 45 11 24 1 0 9 37 30 42 3 2 11 6 5 44 1 0 15 3 0 15 9 0 16 10 7 12 2 0 7 6 7 10 1 0 21 1 0 13 1 0 16 chain 17212 chr2 243199373 + 100688583 100688908 MER1B 344 + 0 338 135008 18 11 19 43 14 22 96 22 18 50 28 29 43 chain 28334 chr2 243199373 + 100738242 100738537 AluYb8 318 + 0 295 91820 295 chain 45347 chr2 243199373 + 100744256 100744810 MER41A 554 + 0 554 62659 53 0 1 458 2 1 41 chain 541315 chr2 243199373 + 100768076 100774259 L1PA4 6152 - 0 6141 2619 6 0 5 936 55 0 1840 5 13 510 1 0 2245 11 9 5 0 3 569 chain 30122 chr2 243199373 + 100781566 100781883 AluYb8 318 + 1 318 84416 317 chain 48461 chr2 243199373 + 100809610 100810299 LTR39 781 - 33 731 60143 33 1 0 16 5 20 177 11 7 98 0 14 9 13 0 111 0 1 79 4 3 8 1 0 57 1 0 65 chain 24209 chr2 243199373 + 100847607 100847976 THE1B 368 + 7 368 109159 10 2 0 30 0 1 60 14 15 54 23 16 101 1 0 74 chain 77120 chr2 243199373 + 100886234 100887268 LTR5B 1012 + 0 1012 44904 128 1 14 103 47 1 28 10 11 132 1 0 72 1 0 442 0 3 11 0 7 51 0 2 7 chain 7390 chr2 243199373 + 100916715 100916807 L1PA6 6164 - 2 92 174829 8 2 0 82 chain 43129 chr2 243199373 + 100950098 100950613 MER9a1 513 + 0 513 65256 156 12 10 347 chain 106645 chr2 243199373 + 100959299 100961639 THE1B-int 1605 + 0 1605 35082 170 0 1 227 5 6 26 37 20 179 80 83 43 0 9 312 4 5 13 838 105 406 chain 19138 chr2 243199373 + 100961639 100961940 THE1B 368 + 0 306 129716 169 1 0 21 7 10 14 13 16 12 1 0 28 6 7 29 chain 19959 chr2 243199373 + 100972711 100973065 THE1B 368 + 7 368 127274 104 0 3 9 1 0 54 63 69 60 17 16 46 chain 69624 chr2 243199373 + 100978465 100979409 MER11C 1089 - 15 1089 48561 79 0 2 208 1 9 177 62 63 10 0 3 186 1 18 57 0 3 34 0 5 74 0 91 55 chain 87988 chr2 243199373 + 100980397 100981706 HERVK11-int 2540 - 305 1555 40379 125 5 6 74 6 5 190 1 0 104 17 12 246 0 9 117 1 4 54 21 1 34 12 1 25 1 0 15 10 0 16 27 23 35 19 18 56 2 0 34 4 3 19 23 8 16 chain 3070 chr2 243199373 + 100982393 100982426 MER11A 1151 - 1111 1144 223577 33 chain 9609 chr2 243199373 + 100987168 100987269 AluYf4 310 - 16 117 162543 101 chain 18510 chr2 243199373 + 100992555 100992767 L1PA5 6144 + 5930 6143 131473 66 0 1 146 chain 23095 chr2 243199373 + 101004096 101004386 AluSp 311 + 20 302 115163 121 9 1 160 chain 19853 chr2 243199373 + 101040796 101044910 THE1B 368 - 11 368 127645 164 6 5 19 1 0 5 3770 0 109 1 16 39 chain 7605 chr2 243199373 + 101048571 101048679 L1MB8 1703 + 1209 1318 173509 81 5 6 22 chain 7764 chr2 243199373 + 101057506 101057598 THE1C 375 - 182 275 172514 11 0 1 81 chain 212317 chr2 243199373 + 101073426 101076582 MER4-int 2692 + 1 2692 18340 10 1 0 25 2 0 63 2 0 8 4 3 7 6 0 115 0 4 326 3 4 58 0 4 16 487 0 19 0 1 62 1 0 5 1 6 45 0 15 42 0 1 79 0 1 277 0 3 558 1 0 263 4 2 99 0 2 150 0 2 10 1 0 406 chain 38727 chr2 243199373 + 101074088 101074557 L1PA5 6144 - 13 483 71114 134 6 7 329 chain 35943 chr2 243199373 + 101076590 101077058 MER4A1 472 + 0 472 74967 7 0 1 279 13 16 169 chain 18956 chr2 243199373 + 101109151 101109436 AluSz6 309 + 10 293 130211 126 39 40 108 3 0 9 chain 5850 chr2 243199373 + 101121267 101121419 L1MC1 2226 + 2066 2198 186683 17 5 0 22 2 0 6 36 25 16 1 0 32 1 0 14 chain 11563 chr2 243199373 + 101137389 101137531 THE1C 375 + 0 142 154056 142 chain 8849 chr2 243199373 + 101152682 101152791 MER4D1 891 - 0 113 166381 59 0 4 50 chain 15247 chr2 243199373 + 101153300 101153498 AluSg7 307 + 1 205 140641 41 0 6 80 1 2 59 2 1 15 chain 37522 chr2 243199373 + 101154162 101155075 LTR9B 643 - 0 635 72789 31 3 0 13 3 4 64 0 14 23 71 72 124 23 29 63 1 0 70 0 1 46 300 0 23 0 3 55 chain 14637 chr2 243199373 + 101164982 101165183 MER107 203 + 8 203 142467 111 14 0 26 5 0 7 0 13 38 chain 18391 chr2 243199373 + 101166031 101166268 AluY 311 + 74 300 131818 41 2 0 3 10 0 14 0 1 167 chain 22816 chr2 243199373 + 101168263 101168533 AluY 311 + 27 299 116501 99 0 1 154 0 1 17 chain 3539 chr2 243199373 + 101170252 101170312 L1MB7 1623 + 1364 1423 214716 11 10 9 39 chain 21885 chr2 243199373 + 101176674 101177040 LOR1b 457 - 53 448 120686 61 8 0 9 5 0 88 36 71 32 2 0 102 1 10 22 chain 10828 chr2 243199373 + 101187629 101187750 AluSg4 309 - 130 251 156878 121 chain 3567 chr2 243199373 + 101201591 101201631 MSTB1 431 + 93 133 214173 40 chain 25908 chr2 243199373 + 101201631 101202049 MSTA 426 + 0 406 100386 23 15 13 93 1 0 19 4 0 54 8 4 21 20 19 50 0 5 44 5 0 61 chain 52026 chr2 243199373 + 101235082 101235883 L1PB1 5432 - 37 805 57607 4 1 0 21 1 0 24 2 0 11 11 8 15 34 23 9 3 2 40 20 18 51 2 0 11 6 2 9 1 0 13 1 0 20 1 0 11 5 0 39 4 5 284 1 2 146 chain 3067 chr2 243199373 + 101261193 101261228 MIRc 230 - 98 133 223603 35 chain 25094 chr2 243199373 + 101270577 101270875 AluSp 311 - 4 302 104325 298 chain 27038 chr2 243199373 + 101278185 101278493 AluY 311 + 1 311 96150 76 0 1 54 0 1 178 chain 4193 chr2 243199373 + 101281891 101281941 MER5A 189 - 138 188 204646 50 chain 19869 chr2 243199373 + 101283374 101283661 Tigger3b 1229 + 651 941 127596 46 2 1 56 6 10 5 3 0 5 0 3 164 chain 20257 chr2 243199373 + 101283661 101283949 AluSz 310 - 9 301 126353 6 7 0 53 0 12 89 9 7 112 1 2 11 chain 80194 chr2 243199373 + 101301327 101302299 LTR5_Hs 974 + 0 974 43508 467 0 1 188 0 1 317 chain 7077 chr2 243199373 + 101305479 101305650 L1PB1 5432 + 5280 5427 176903 16 29 16 15 1 0 4 2 0 15 2 0 27 1 0 18 1 0 13 3 2 12 2 0 5 1 0 4 chain 15958 chr2 243199373 + 101311163 101311543 MSTB 430 - 13 426 138490 94 11 16 29 100 126 13 14 0 8 15 31 96 chain 21032 chr2 243199373 + 101311555 101311789 L1PA5 6144 - 12 246 123803 234 chain 27332 chr2 243199373 + 101328524 101329015 MLT2A1 477 + 0 475 95165 48 0 2 69 0 1 19 1 2 24 35 39 142 0 2 33 81 56 21 1 0 17 chain 373082 chr2 243199373 + 101329017 101333693 HERVL-int 5654 + 0 5654 10991 15 1 0 210 0 8 354 1 0 4 2 3 17 0 17 230 0 1039 8 4 6 232 0 6 61 0 2 43 1 0 65 0 1 14 1 2 165 0 3 166 0 1 290 0 1 225 138 4 363 0 1 151 0 1 40 0 2 796 0 4 238 1 0 4 5 30 403 7 6 199 0 1 79 0 1 143 chain 11740 chr2 243199373 + 101331126 101331263 HERVL-int 5654 + 2396 2536 152216 108 0 3 29 chain 38225 chr2 243199373 + 101342370 101342912 L1PA8 5853 + 5318 5853 71810 19 1 0 185 0 1 41 1 0 46 2 0 71 1 0 12 17 16 31 2 1 19 2 1 92 chain 24324 chr2 243199373 + 101406341 101406637 AluSp 311 - 17 311 108522 21 2 0 273 chain 107993 chr2 243199373 + 101444032 101445611 L1PA16 3655 - 86 1653 34719 144 9 10 92 26 1 31 13 11 32 14 9 21 4 3 11 1 0 109 1 4 106 6 18 52 4 3 4 0 1 9 3 0 84 2 1 114 6 16 9 1 0 23 1 0 6 0 1 13 0 1 628 chain 3175 chr2 243199373 + 101487607 101487641 MER58A 224 + 49 83 221435 34 chain 29755 chr2 243199373 + 101513358 101513730 THE1C 375 - 0 375 85633 88 0 1 148 0 1 92 0 1 44 chain 17760 chr2 243199373 + 101568796 101569044 AluSp 311 + 52 300 133540 170 30 30 48 chain 26475 chr2 243199373 + 101585656 101586026 L1PA8 5853 - 4 358 98147 68 10 6 15 1 0 19 2 1 44 6 0 14 1 0 73 2 0 45 1 0 69 chain 9098 chr2 243199373 + 101608857 101609018 MSTA 426 + 14 206 165076 75 0 1 8 31 61 47 chain 23761 chr2 243199373 + 101617005 101617271 AluY 311 + 21 288 111695 111 0 1 155 chain 130025 chr2 243199373 + 101632083 101633535 L1PA3long 6157 + 4694 6144 28081 1301 0 5 5 6 0 135 1 0 4 chain 25059 chr2 243199373 + 101671132 101671443 AluSp 311 - 0 311 104511 160 0 3 6 7 4 138 chain 9359 chr2 243199373 + 101673528 101673960 MER34A1 583 + 11 440 163759 56 41 42 5 3 0 19 115 100 21 116 130 56 chain 22496 chr2 243199373 + 101688324 101688617 Tigger1 2417 - 850 1145 118046 10 0 4 51 5 1 7 0 1 138 0 1 82 chain 18378 chr2 243199373 + 101691907 101692244 THE1D 372 + 16 353 131855 35 10 1 22 4 5 49 1 5 12 48 55 25 1 0 14 2 0 114 chain 7603 chr2 243199373 + 101703128 101703244 MER30 238 - 6 115 173523 42 8 5 55 4 0 7 chain 37103 chr2 243199373 + 101711720 101712125 L1PA4 6152 - 6 410 73375 134 1 0 270 chain 291821 chr2 243199373 + 101714852 101718467 L1PA8A 6298 + 2694 6290 13916 15 7 10 39 6 10 339 0 3 256 8 0 46 0 8 27 0 3 919 0 1 78 0 3 5 3 0 39 1 0 258 1 0 4 0 1 142 37 11 266 7 0 314 9 8 536 0 2 253 chain 24617 chr2 243199373 + 101746098 101746394 AluY 311 + 13 310 106900 116 1 2 179 chain 20559 chr2 243199373 + 101754368 101754727 MSTA 426 - 21 426 125435 88 0 2 5 1 19 11 10 10 30 14 13 54 38 65 108 chain 4687 chr2 243199373 + 101763386 101763453 L1MA6 2487 - 83 146 198665 6 1 0 19 3 0 38 chain 4132 chr2 243199373 + 101781387 101781437 MER3 215 - 4 54 205456 50 chain 25852 chr2 243199373 + 101785884 101786219 THE1B 368 + 33 368 100646 4 0 1 65 1 0 66 1 0 22 0 2 100 1 0 75 chain 123779 chr2 243199373 + 101786219 101787795 THE1B-int 1605 + 0 1605 29781 287 0 1 142 1 26 254 10 11 299 3 1 38 0 3 341 0 1 129 1 0 4 0 1 67 chain 44621 chr2 243199373 + 101791205 101791717 MER9a2 513 - 0 513 63460 34 0 1 478 chain 4870 chr2 243199373 + 101794555 101794651 LTR7 482 - 6 104 196590 45 27 29 24 chain 32681 chr2 243199373 + 101794869 101795335 LTR7B 505 - 1 505 79718 142 1 0 82 8 10 18 37 68 44 4 0 25 0 10 105 chain 3352 chr2 243199373 + 101802532 101802583 MER4D1 891 - 8 61 218022 28 1 3 22 chain 39379 chr2 243199373 + 101802586 101803037 LTR2 463 - 3 463 70203 154 0 1 74 0 5 168 0 3 55 chain 28295 chr2 243199373 + 101804174 101804546 THE1C 375 + 0 375 91964 47 1 2 31 5 6 27 1 2 260 chain 22432 chr2 243199373 + 101812300 101812770 THE1B 368 + 0 366 118332 44 0 15 50 51 13 32 75 0 18 16 15 11 5 1 94 1 0 73 chain 7226 chr2 243199373 + 101816978 101817078 L1MB7 1623 - 614 713 175908 15 2 1 83 chain 26053 chr2 243199373 + 101828779 101829424 THE1C 375 + 2 336 99816 117 0 1 41 312 0 175 chain 3286 chr2 243199373 + 101836737 101836866 MER58A 224 + 53 184 219262 30 47 47 14 22 24 16 chain 6013 chr2 243199373 + 101839967 101840046 Charlie1a 1436 + 1353 1431 185113 18 1 0 60 chain 19902 chr2 243199373 + 101842120 101842379 MER57A1 433 + 0 268 127478 40 0 8 193 2 3 24 chain 72416 chr2 243199373 + 101854298 101855167 MER11D 897 + 5 897 47297 259 9 9 318 3 26 280 chain 40375 chr2 243199373 + 101860226 101860687 HERVK11D-int 613 + 153 613 68771 135 1 0 325 chain 75585 chr2 243199373 + 101860687 101861560 MER11D 897 + 0 897 45723 591 3 26 165 0 1 114 chain 52175 chr2 243199373 + 101862231 101863196 PABL_A 660 - 1 660 57515 408 1 0 21 15 11 154 310 9 56 chain 37742 chr2 243199373 + 101865171 101865611 LTR7C 471 - 24 471 72497 99 0 1 292 0 6 49 chain 27949 chr2 243199373 + 101871675 101871969 AluYk11 308 + 0 294 93171 294 chain 5802 chr2 243199373 + 101873949 101874018 LTR19A 502 + 433 502 187133 69 chain 29441 chr2 243199373 + 101891893 101892202 AluYa5 310 - 1 310 86894 309 chain 23233 chr2 243199373 + 101905897 101906187 AluSc5 308 + 11 297 114529 246 9 5 35 chain 475934 chr2 243199373 + 101932386 101937919 L1PA6 6164 + 550 6160 7859 389 0 25 198 0 3 789 1 0 363 8 9 863 0 1 80 0 1 23 0 1 371 0 1 24 3 0 12 0 1 661 0 4 776 0 8 162 1 0 178 2 0 604 0 36 18 0 2 7 chain 15394 chr2 243199373 + 101942407 101942908 L1MC1 2226 + 1722 2198 140214 66 4 0 51 142 145 8 2 0 55 107 87 18 1 0 32 1 0 14 chain 46530 chr2 243199373 + 101955388 101956034 LTR6A 649 - 0 649 61570 62 1 0 149 0 2 59 10 11 75 0 1 30 10 8 148 3 0 5 0 2 52 20 23 22 chain 3502 chr2 243199373 + 101956125 101956191 MLT1F1 559 + 487 551 215344 24 8 7 4 1 0 29 chain 18824 chr2 243199373 + 101969545 101969785 L1PA8 5853 - 825 1061 130595 19 2 0 105 8 6 106 chain 63334 chr2 243199373 + 101969786 101970586 L1PA8 5853 + 5052 5853 51307 89 0 1 81 0 1 340 1 0 24 9 8 12 2 0 71 2 0 57 10 8 18 0 7 84 chain 4268 chr2 243199373 + 101975135 101975201 MER50 708 - 25 89 203642 43 8 6 15 chain 22700 chr2 243199373 + 102006233 102006541 MER4A1 472 - 11 319 117078 53 11 13 100 2 0 142 chain 27007 chr2 243199373 + 102024665 102024965 AluYf4 310 + 0 301 96261 206 1 2 93 chain 54688 chr2 243199373 + 102040696 102041322 L1PA6 6164 + 5371 5999 55913 186 0 1 273 0 1 167 chain 12856 chr2 243199373 + 102041339 102041485 L1PA6 6164 + 6016 6160 148813 138 2 0 6 chain 515288 chr2 243199373 + 102070371 102076840 L1PA6 6164 - 8 6164 5638 152 0 1 170 0 1 762 318 0 704 0 4 466 0 1 199 2 0 68 0 2 76 1 0 63 6 14 469 5 6 58 2 0 384 1 0 555 0 1 319 0 1 130 2 0 33 3 4 769 4 5 172 1 0 140 33 28 27 4 1 192 1 2 116 1 0 61 chain 22586 chr2 243199373 + 102077457 102077744 AluY 311 + 9 302 117650 113 0 1 10 4 3 39 0 6 121 chain 10285 chr2 243199373 + 102089053 102089197 MER30 238 - 0 167 159208 19 0 2 83 5 26 37 chain 6808 chr2 243199373 + 102107648 102107833 MLT1A1-int 1737 + 56 246 178892 27 0 1 26 1 0 30 82 87 19 chain 26285 chr2 243199373 + 102121598 102121881 L1HS 6032 + 5573 5856 98880 283 chain 6596 chr2 243199373 + 102125340 102125425 Charlie1b 519 + 190 275 180492 85 chain 89657 chr2 243199373 + 102139678 102140979 HSMAR2 1300 - 5 1299 39762 60 10 14 30 28 31 50 1 0 48 14 24 265 1 0 4 0 1 92 0 1 21 9 0 40 0 1 74 0 1 299 1 0 91 6 8 75 30 12 52 chain 37573 chr2 243199373 + 102142318 102142822 LTR10D 510 - 0 510 72719 248 9 6 34 2 0 136 7 18 68 chain 9629 chr2 243199373 + 102183775 102183896 MER50 708 - 23 144 162443 121 chain 21582 chr2 243199373 + 102207700 102207958 AluSg4 309 + 37 297 121840 77 0 2 181 chain 25765 chr2 243199373 + 102209487 102209845 Tigger1 2417 - 1095 1446 101025 28 4 5 14 15 8 283 1 0 13 chain 8921 chr2 243199373 + 102219467 102219595 MER85 139 + 0 139 166023 94 13 24 21 chain 21224 chr2 243199373 + 102236481 102236773 AluSp 311 + 12 295 123123 98 1 2 164 16 6 13 chain 11695 chr2 243199373 + 102242758 102242992 MLT1B 390 - 126 370 153496 18 0 3 10 5 6 8 2 0 6 41 51 87 3 1 54 chain 2989 chr2 243199373 + 102282409 102282445 LTR1 825 - 584 620 225235 36 chain 22258 chr2 243199373 + 102286285 102286572 AluY 311 + 9 298 119082 38 5 6 73 1 2 170 chain 8690 chr2 243199373 + 102289234 102289358 MER85 139 - 0 139 167247 29 1 0 11 11 27 72 chain 18834 chr2 243199373 + 102302013 102302245 MER50 708 - 2 236 130567 122 0 2 110 chain 24319 chr2 243199373 + 102332631 102332933 AluY 311 + 8 300 108548 124 0 1 159 11 0 8 chain 20895 chr2 243199373 + 102339351 102339721 THE1D 372 - 0 372 124295 145 10 9 19 13 15 81 47 47 23 2 1 17 0 2 13 chain 28494 chr2 243199373 + 102356613 102356915 AluYa5 310 - 9 310 91210 208 1 0 93 chain 183897 chr2 243199373 + 102365130 102367120 L1PA2 6032 + 4026 6017 20599 1236 0 1 754 chain 46415 chr2 243199373 + 102390343 102391079 L1MA2 4263 - 149 891 61669 10 4 3 21 8 22 13 0 3 73 13 11 145 7 4 12 0 3 132 1 0 75 7 3 18 1 0 113 43 41 40 chain 23443 chr2 243199373 + 102452763 102453061 AluSp 311 + 0 293 113409 56 2 1 64 1 0 4 4 1 167 chain 23769 chr2 243199373 + 102524344 102524697 THE1C 375 - 0 375 111658 160 30 31 45 13 14 42 0 20 63 chain 19651 chr2 243199373 + 102524697 102524930 MER51C 639 + 406 639 128246 233 chain 339884 chr2 243199373 + 102551847 102555950 L1P3 4156 + 0 4139 11901 62 1 15 174 1 0 459 4 13 59 2 1 424 0 4 622 1 0 262 6 8 225 1 0 85 0 1 149 0 6 60 0 1 134 1 5 94 1 0 481 0 1 646 0 2 114 2 0 9 1 0 23 chain 9459 chr2 243199373 + 102557083 102557209 THE1A 353 - 228 353 163281 15 1 0 110 chain 3670 chr2 243199373 + 102573372 102573440 L1MC4 1079 + 690 759 212388 18 13 14 37 chain 44209 chr2 243199373 + 102588621 102589174 LTR10C 591 - 29 581 63934 51 2 1 125 1 3 348 2 0 24 chain 3211 chr2 243199373 + 102611267 102611304 MER5A1 166 - 129 166 220731 37 chain 20405 chr2 243199373 + 102626810 102627056 AluY 311 + 57 301 125876 66 2 0 178 chain 72069 chr2 243199373 + 102656378 102657847 L1PA13 3608 - 125 1204 47449 15 1 0 14 14 10 48 2 0 12 1 0 49 1 0 62 2 0 63 388 0 47 7 6 10 16 15 23 8 9 67 1 0 90 7 9 47 7 8 66 4 9 61 7 8 100 0 1 219 0 1 10 chain 13223 chr2 243199373 + 102661913 102662125 L1PA8 5853 - 4 214 147376 108 2 1 10 0 1 16 14 15 5 2 0 10 7 6 38 chain 45792 chr2 243199373 + 102664318 102664916 L1PA8 5853 + 5209 5834 62241 348 12 11 40 2 0 72 1 0 9 5 0 11 0 1 39 2 1 47 0 36 10 chain 38757 chr2 243199373 + 102723643 102724098 L1PA5 6144 + 5675 6130 71068 306 1 6 6 5 0 137 chain 10001 chr2 243199373 + 102741408 102741542 THE1D 372 - 236 371 160577 31 6 7 97 chain 24491 chr2 243199373 + 102749427 102749722 AluY 311 + 5 301 107585 127 0 1 168 chain 22931 chr2 243199373 + 102769963 102770320 THE1D 372 + 0 372 115959 40 1 2 120 0 1 17 8 14 14 30 38 58 1 0 68 chain 3771 chr2 243199373 + 102785936 102785982 MER3 215 - 161 207 210792 46 chain 13178 chr2 243199373 + 102906657 102906808 L1PA5 6144 + 5988 6139 147555 151 chain 4083 chr2 243199373 + 102928645 102928693 MER57A1 433 - 0 48 206168 48 chain 540950 chr2 243199373 + 102940831 102946952 L1PA4 6152 + 6 6143 2670 738 1 0 1576 1 0 1924 0 13 99 0 4 38 0 1 852 0 1 565 1 0 326 chain 22724 chr2 243199373 + 102973696 102973976 AluSc8 310 + 26 309 116964 11 0 1 94 0 3 170 1 0 4 chain 12635 chr2 243199373 + 102983152 102983316 THE1C 375 - 92 375 149710 28 0 67 91 1 53 44 chain 30136 chr2 243199373 + 102989713 102990081 L1PA7 6471 + 6103 6469 84362 204 5 3 159 chain 21875 chr2 243199373 + 102990297 102990642 MER1A 529 + 198 529 120731 139 0 1 113 72 57 21 chain 5408 chr2 243199373 + 103097933 103098005 MER53 195 - 14 84 190909 50 2 0 20 chain 61686 chr2 243199373 + 103149969 103150641 L1PA3long 6157 - 15 687 52043 672 chain 41358 chr2 243199373 + 103150641 103151099 L1PA3long 6157 + 5026 5484 67461 458 chain 23091 chr2 243199373 + 103168554 103168837 AluSg7 307 - 14 298 115195 161 0 1 122 chain 23567 chr2 243199373 + 103179012 103179370 THE1C 375 - 20 375 112764 5 1 0 50 3 0 103 3 4 9 5 4 62 13 14 104 chain 567323 chr2 243199373 + 103182814 103188844 L1HS 6032 - 1 6032 68 5846 0 1 184 chain 83133 chr2 243199373 + 103196969 103197937 L1PA5 6144 - 118 1088 42281 731 0 3 78 1 0 158 chain 10495 chr2 243199373 + 103197937 103198058 L1PA5 6144 + 6023 6144 158269 121 chain 16012 chr2 243199373 + 103217660 103218047 THE1D 372 - 0 371 138324 32 1 0 14 10 11 4 1 0 87 111 102 17 7 8 76 13 6 14 chain 65120 chr2 243199373 + 103241794 103242529 L1PA5 6144 - 12 748 50518 6 0 1 729 chain 69686 chr2 243199373 + 103242529 103243310 L1PA5 6144 + 4631 5412 48530 781 chain 5245 chr2 243199373 + 103256196 103256267 L1MB3 1562 - 148 218 192571 63 1 0 7 chain 21841 chr2 243199373 + 103258253 103258501 L1PA6 6164 + 5901 6149 120850 248 chain 459326 chr2 243199373 + 103261195 103266949 L1PA8 5853 + 119 5853 8430 186 0 4 13 4 5 1193 0 2 40 1 0 457 7 0 131 24 12 91 1 6 5 0 2 83 4 8 27 2 1 197 4 0 3 34 0 19 0 4 76 0 1 203 1 0 45 1 5 59 1 2 745 14 13 212 1 7 80 0 4 99 0 1 210 0 10 502 0 3 124 2 0 75 0 2 51 0 3 265 4 0 54 0 2 101 1 0 46 2 0 57 4 0 6 9 8 10 2 0 47 6 5 19 1 0 93 chain 5742 chr2 243199373 + 103272039 103272106 Tigger3b 1229 - 1124 1191 187718 67 chain 18247 chr2 243199373 + 103322830 103323049 L1PA5 6144 + 5930 6143 132214 205 6 0 8 chain 3247 chr2 243199373 + 103340478 103340512 tRNA-Gly-GGA 38 - 0 34 220077 34 chain 30591 chr2 243199373 + 103355843 103356273 MSTA 426 + 0 426 83215 26 6 7 70 0 1 55 8 0 46 5 4 36 1 0 12 0 1 54 2 5 109 chain 52961 chr2 243199373 + 103391606 103392195 L1P1 4361 + 3741 4328 57039 409 1 0 155 1 0 23 chain 41922 chr2 243199373 + 103400972 103401496 MER41A 554 - 9 540 66728 28 2 1 18 0 1 223 0 1 232 1 7 20 chain 24442 chr2 243199373 + 103402669 103402964 AluSg4 309 - 7 302 107851 295 chain 50633 chr2 243199373 + 103417697 103418365 LTR76 689 - 0 682 58553 51 0 1 28 0 1 378 0 2 5 3 0 41 0 10 123 3 0 5 2 4 11 0 4 18 chain 18698 chr2 243199373 + 103420653 103421039 L1PB1 5432 - 22 379 130953 6 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 12 4 9 3 0 16 1 0 38 24 22 27 0 3 21 2 0 10 5 1 11 1 0 13 1 0 20 3 0 6 4 5 50 chain 5565 chr2 243199373 + 103476643 103476709 MSTB 430 - 357 423 189428 66 chain 557069 chr2 243199373 + 103490482 103496633 L1PA3long 6157 - 0 6151 602 2366 3 1 2040 0 1 566 0 1 1176 chain 14538 chr2 243199373 + 103497071 103497284 MER30 238 + 0 238 142771 99 11 0 9 0 30 14 0 6 22 2 1 4 0 1 52 chain 12785 chr2 243199373 + 103506956 103507094 L1PA3long 6157 + 6019 6157 149117 138 chain 219151 chr2 243199373 + 103514161 103516617 L1PA4 6152 + 3679 6140 17936 260 4 5 139 0 2 1732 1 2 219 0 1 101 chain 29422 chr2 243199373 + 103525181 103525557 MLT2A1 477 - 94 476 86980 210 0 4 26 0 1 15 5 6 4 1 0 26 3 4 86 chain 442063 chr2 243199373 + 103525583 103531077 HERVL-int 5654 - 25 5654 8994 192 9 14 201 4 0 110 0 105 752 0 1 24 3 12 190 1 0 265 0 1 54 0 1 303 5 6 32 1 0 401 2 3 693 10 0 17 1 2 81 0 1 122 5 9 27 3 0 302 0 21 290 0 3 5 3 0 79 0 1 215 8 9 873 0 1 211 chain 28265 chr2 243199373 + 103531239 103531623 MLT2A1 477 - 85 475 92062 7 4 0 103 5 10 88 11 15 28 0 1 138 chain 16423 chr2 243199373 + 103615674 103615911 MER1B 344 + 96 344 137144 170 11 19 26 4 7 26 chain 5291 chr2 243199373 + 103646918 103646979 L1PA3long 6157 - 17 78 192110 61 chain 192669 chr2 243199373 + 103657717 103660455 L1PB1 5432 + 2753 5424 19798 73 1 0 11 6 5 349 2 0 73 1 0 4 0 1 467 21 1 13 0 1 205 1 0 428 0 1 5 6 8 222 1 0 1 0 2 189 6 5 220 23 15 54 1 0 7 2 0 4 3 0 21 1 0 9 16 11 11 3 1 50 2 1 16 1 0 42 8 7 9 1 0 5 20 9 18 8 5 12 7 5 21 1 0 21 1 0 13 2 1 15 1 0 4 chain 60498 chr2 243199373 + 103661355 103662131 THE1B-int 1605 + 14 893 52579 237 0 33 40 1 8 63 0 64 222 1 0 212 chain 52578 chr2 243199373 + 103675387 103676031 L1P3 4156 - 2480 3131 57249 280 1 4 181 0 4 182 chain 13780 chr2 243199373 + 103676031 103676215 L1P2 5180 - 3629 3814 144563 90 5 6 89 chain 215713 chr2 243199373 + 103676215 103678861 L1PA7 6471 + 3863 6467 18127 137 8 0 257 1 2 79 5 6 347 0 1 257 2 0 35 0 1 41 41 5 1436 chain 118640 chr2 243199373 + 103687774 103689086 L1PA3long 6157 + 4844 6157 31561 415 0 1 897 chain 6225 chr2 243199373 + 103712031 103712220 L1MC1 2226 + 1789 1972 183361 22 88 83 21 1 0 57 chain 9847 chr2 243199373 + 103717390 103717556 MER30 238 - 0 174 161356 48 11 8 58 7 0 6 4 22 32 chain 20213 chr2 243199373 + 103735244 103735522 AluSc 308 + 0 273 126490 20 0 12 16 26 9 216 chain 27253 chr2 243199373 + 103768205 103768554 THE1B 368 + 6 368 95425 34 0 15 117 1 0 122 1 0 74 chain 77021 chr2 243199373 + 103788333 103789181 L1PA3long 6157 - 15 864 44958 114 0 1 734 chain 524879 chr2 243199373 + 103817023 103823152 L1PA4 6152 + 10 6151 4696 111 7 7 347 0 4 287 6 2 35 0 4 884 1 2 268 0 1 6 1 0 881 0 1 135 1 2 529 1 0 6 0 1 370 0 1 848 0 3 1276 0 1 129 chain 26368 chr2 243199373 + 103832007 103832323 L1PA8 5853 - 2076 2392 98538 316 chain 102915 chr2 243199373 + 103854508 103856043 L1PA8 5853 + 3684 5853 36021 155 41 685 460 1 0 25 2 0 83 1 0 267 13 0 7 26 41 154 12 11 35 6 4 64 19 16 49 17 16 4 1 0 93 chain 7286 chr2 243199373 + 103867677 103868032 L1MC1 2226 - 123 461 175542 20 73 74 17 151 139 9 6 0 79 chain 30149 chr2 243199373 + 103873665 103874018 L1PA7 6471 + 6068 6420 84331 76 0 1 119 2 0 156 chain 3044 chr2 243199373 + 103909157 103909220 MER106A 234 - 154 207 224133 19 11 0 19 1 2 13 chain 158060 chr2 243199373 + 103916667 103918602 L1PA7 6471 - 4 1943 23583 156 1 0 54 1 2 534 12 13 74 1 2 5 0 2 650 0 1 25 1 0 316 1 2 6 1 0 97 chain 15645 chr2 243199373 + 103918602 103918791 L1PA7 6471 + 4337 4525 139180 36 1 0 152 chain 48748 chr2 243199373 + 103927136 103927797 L1PA8 5853 - 0 679 59912 92 2 1 19 2 1 51 12 10 71 2 0 8 0 1 8 0 1 26 1 0 13 9 30 137 0 2 208 chain 10925 chr2 243199373 + 103975839 103975967 L1PA3long 6157 + 6025 6157 156510 111 1 5 16 chain 24697 chr2 243199373 + 104009900 104010182 L1PA7 6471 - 717 1001 106453 126 0 3 88 1 0 67 chain 56573 chr2 243199373 + 104010182 104010884 L1PA7 6471 + 5753 6470 54810 130 0 1 424 5 12 39 0 7 104 chain 14311 chr2 243199373 + 104011056 104011234 AluSp 311 + 58 235 143524 74 1 0 103 chain 223688 chr2 243199373 + 104031311 104035022 L1PB1 5432 + 2335 5409 17673 71 0 1 84 1 2 43 0 1 293 13 13 159 1 2 207 12 11 250 331 2 4 0 1 5 0 3 48 0 3 194 1 0 513 308 0 100 7 0 77 0 19 11 0 13 161 3 0 310 0 1 122 4 5 32 8 11 7 5 0 24 1 0 9 16 11 9 2 0 53 19 17 44 1 0 7 1 0 4 6 4 17 10 1 13 11 8 11 2 0 24 1 0 18 5 4 12 1 0 5 chain 28489 chr2 243199373 + 104080056 104080353 AluYa5 310 - 13 310 91230 297 chain 24383 chr2 243199373 + 104082489 104082805 AluY 311 + 0 311 108178 62 10 4 66 0 1 178 chain 464846 chr2 243199373 + 104087136 104092702 L1PA6 6164 - 5 5579 8227 5 2 0 277 0 1 137 0 1 483 10 0 1476 1 0 83 0 2 266 4 8 142 0 3 85 0 1 6 1 0 62 0 1 667 0 1 90 0 1 36 2 0 482 0 7 691 0 1 394 10 11 154 chain 42220 chr2 243199373 + 104126458 104127042 L1PB 1623 - 172 747 66375 5 1 0 53 3 4 72 19 11 4 1 0 426 chain 34701 chr2 243199373 + 104134254 104134639 L1PA4 6152 - 6 391 76621 385 chain 63235 chr2 243199373 + 104134639 104135356 L1PA4 6152 + 5052 5769 51346 717 chain 89962 chr2 243199373 + 104151529 104152532 L1PA4 6152 - 6 1011 39665 772 0 2 231 chain 61905 chr2 243199373 + 104156876 104157617 L1PA7 6471 - 4 746 51941 213 0 1 122 1 0 337 0 1 68 chain 9778 chr2 243199373 + 104161298 104161453 L1PA8 5853 - 0 154 161707 5 0 1 84 4 3 16 10 9 36 chain 59619 chr2 243199373 + 104181213 104181878 L1PA4 6152 + 5233 5897 53041 145 1 0 519 chain 22485 chr2 243199373 + 104181883 104182131 L1PA4 6152 + 5903 6151 118084 248 chain 3595 chr2 243199373 + 104186989 104187038 MLT1C 463 - 286 335 213736 9 0 1 5 1 0 34 chain 2956 chr2 243199373 + 104187200 104187231 MLT1B 390 - 228 259 225950 31 chain 5207 chr2 243199373 + 104192501 104192585 L1PB1 5432 + 5335 5415 192942 11 2 0 24 1 0 14 0 1 6 1 0 13 1 0 11 chain 76359 chr2 243199373 + 104207880 104209002 MER11A 1151 + 0 1144 45286 55 0 99 140 4 0 94 0 1 51 5 6 83 0 3 8 0 7 137 5 6 145 6 5 22 88 0 74 8 6 5 0 2 22 0 1 85 0 2 17 0 1 4 1 0 63 chain 46357 chr2 243199373 + 104248926 104249497 L1PA7 6471 - 661 1229 61724 107 1 0 82 3 0 284 5 6 89 chain 55663 chr2 243199373 + 104249497 104250166 L1PA7 6471 + 5798 6466 55330 510 4 5 146 2 0 7 chain 32874 chr2 243199373 + 104264455 104264818 L1PA3long 6157 - 1 363 79412 338 1 0 24 chain 22310 chr2 243199373 + 104288118 104288520 MSTA 426 - 53 426 118873 9 29 0 55 1 0 36 1 0 34 16 14 81 17 16 15 11 16 97 chain 189836 chr2 243199373 + 104303671 104305794 L1PA4 6152 + 3998 6140 20068 141 0 1 1253 0 3 173 0 15 556 chain 23221 chr2 243199373 + 104305952 104306242 AluSp 311 - 17 310 114593 141 0 3 8 3 0 48 0 3 90 chain 57387 chr2 243199373 + 104310610 104311362 L1PA10 4194 - 747 1493 54294 46 5 0 264 8 6 59 0 3 109 2 0 259 chain 29319 chr2 243199373 + 104312675 104313001 AluYb8 318 - 2 318 87449 193 10 0 123 chain 28141 chr2 243199373 + 104363147 104363455 L1PA3long 6157 - 0 307 92501 155 1 0 152 chain 18267 chr2 243199373 + 104411594 104411811 THE1B-int 1605 - 1337 1556 132161 192 0 2 25 chain 7453 chr2 243199373 + 104451019 104451116 L1PA8 5853 - 0 93 174429 79 4 0 14 chain 3390 chr2 243199373 + 104506369 104506410 MSTC 436 + 395 436 217276 41 chain 13428 chr2 243199373 + 104511229 104511374 L1PA4 6152 + 6006 6151 146583 145 chain 84459 chr2 243199373 + 104526960 104528037 L1PA8A 6298 - 7 1064 41736 107 1 2 185 19 0 31 0 1 385 0 1 95 5 1 249 chain 73692 chr2 243199373 + 104565920 104566721 L1PA3long 6157 + 5356 6157 46682 801 chain 55911 chr2 243199373 + 104604210 104604832 L1PA4 6152 - 17 639 55176 622 chain 17768 chr2 243199373 + 104612672 104612887 L1PA7 6471 + 6248 6464 133517 20 0 1 195 chain 25953 chr2 243199373 + 104629625 104629990 THE1B 368 - 0 368 100194 18 3 0 5 7 10 16 5 13 106 4 0 32 2 0 34 0 1 133 chain 21489 chr2 243199373 + 104638090 104638358 AluY 311 + 43 301 122180 75 5 0 165 5 0 18 chain 19580 chr2 243199373 + 104677820 104678044 L1PA5 6144 - 4 229 128430 155 0 1 69 chain 27007 chr2 243199373 + 104685187 104685545 THE1B 368 - 0 368 96260 47 7 18 129 1 0 174 chain 11491 chr2 243199373 + 104706897 104707025 L1PA3long 6157 + 6028 6156 154330 128 chain 43693 chr2 243199373 + 104711840 104712351 MER9a3 513 - 0 513 64577 337 0 1 158 1 2 15 chain 8901 chr2 243199373 + 104724443 104724538 L1PA4 6152 - 528 623 166135 95 chain 43699 chr2 243199373 + 104724539 104725029 L1PA4 6152 + 5653 6143 64569 490 chain 23317 chr2 243199373 + 104740866 104741159 AluSp 311 + 2 298 114112 45 1 7 78 3 0 166 chain 77094 chr2 243199373 + 104750964 104751874 L1PA4 6152 + 5230 6145 44920 28 12 18 25 1 0 844 chain 25035 chr2 243199373 + 104779549 104779854 AluY 311 + 6 308 104617 125 3 0 177 chain 34952 chr2 243199373 + 104788023 104788527 MLT2A2 560 + 0 560 76261 166 0 9 19 8 11 74 25 57 55 1 2 14 16 27 126 chain 29267 chr2 243199373 + 104803592 104803902 AluYb8 318 - 9 318 87706 183 1 0 126 chain 2540 chr2 243199373 + 104825773 104825844 MER3 215 - 54 126 232655 21 30 31 20 chain 34265 chr2 243199373 + 104830954 104831482 HUERS-P3b-int 2065 + 1515 2031 77259 84 1 3 12 1 0 25 1 0 86 10 8 69 2 0 18 4 1 63 5 1 47 9 8 91 chain 268686 chr2 243199373 + 104871374 104875440 L1MA1 4479 + 244 4172 15251 35 18 16 58 1 2 62 0 4 22 1 2 133 1 0 6 1 4 75 0 1 46 0 2 9 0 1 60 9 5 79 2 13 127 0 1 338 0 10 329 0 1 256 5 6 39 2 1 6 0 1 95 1 0 53 3 1 46 0 4 197 6 14 190 3 0 7 26 0 5 103 0 62 1 0 72 1 0 14 20 17 33 1 0 68 8 7 68 1 0 38 2 0 156 3 2 15 2 0 17 4 0 76 10 12 127 5 1 129 1 0 36 5 10 15 13 4 74 4 6 13 3 1 35 1 0 25 8 6 10 1 0 66 10 9 16 2 0 13 1 0 88 1 0 4 3 1 4 1 0 113 10 9 29 2 0 37 1 0 7 1 0 5 4 0 16 chain 7686 chr2 243199373 + 104873726 104873820 L1MA1 4479 + 1843 1936 162358 16 1 0 77 chain 21596 chr2 243199373 + 104945864 104946135 AluY 311 + 0 268 121782 15 3 0 253 chain 35504 chr2 243199373 + 104953874 104954287 L1PA4 6152 + 5739 6151 75545 252 1 2 153 2 0 5 chain 26701 chr2 243199373 + 104972159 104972517 HSMAR1 1287 + 6 367 97320 101 16 19 241 chain 138769 chr2 243199373 + 105013662 105015178 L1PA3long 6157 + 4626 6142 26356 681 1 0 305 0 1 529 chain 10738 chr2 243199373 + 105079803 105079929 Tigger3a 397 - 85 211 157251 126 chain 17258 chr2 243199373 + 105127000 105127238 L1PA4 6152 + 5906 6152 134900 130 11 12 27 0 7 70 chain 4544 chr2 243199373 + 105142694 105142751 MER5A 189 - 124 181 200301 57 chain 19387 chr2 243199373 + 105145413 105145648 L1PA10 4194 + 3916 4150 128984 107 0 2 91 3 0 34 chain 5580 chr2 243199373 + 105165911 105165979 MSTD 398 - 327 395 189275 68 chain 5178 chr2 243199373 + 105180192 105180333 MLT2D 439 - 134 290 193251 39 10 27 19 46 44 27 chain 6200 chr2 243199373 + 105180798 105180922 Tigger1a_Art 216 - 14 137 183590 23 3 20 14 17 0 11 1 0 55 chain 57391 chr2 243199373 + 105180966 105181773 L1MA2 4263 + 3236 4047 54293 229 3 0 101 1 0 18 8 4 29 0 18 25 3 2 83 2 1 63 3 0 6 0 1 140 11 9 82 chain 5581 chr2 243199373 + 105185280 105185360 MADE1 96 + 0 96 189267 23 6 22 51 chain 23526 chr2 243199373 + 105186160 105186449 AluSg 306 + 4 293 112981 289 chain 3488 chr2 243199373 + 105198388 105198482 MER5A 189 - 83 183 215543 42 39 45 13 chain 36091 chr2 243199373 + 105203561 105204393 MLT2A1 477 - 0 477 74774 37 364 17 96 8 1 122 0 1 24 0 1 8 5 2 168 chain 461815 chr2 243199373 + 105204393 105209986 HERVL-int 5654 - 0 5654 8339 84 0 5 146 0 6 33 0 2 102 0 3 40 6 7 65 0 1 144 0 1 199 0 1 580 11 19 401 2 0 790 9 7 1035 1 0 4 0 1 204 1 14 191 9 0 240 0 33 509 0 1 664 1 0 122 chain 29685 chr2 243199373 + 105210060 105210443 MLT2A1 477 - 94 477 85887 82 4 5 92 0 1 24 0 1 8 6 3 167 chain 210195 chr2 243199373 + 105223802 105226389 L1P2 5180 + 2 2620 18490 148 1 0 43 0 1 5 3 1 47 3 2 31 7 4 58 5 7 112 1 0 54 6 5 159 1 2 79 0 1 26 0 15 147 0 1 343 0 1 135 0 3 76 0 1 284 16 18 141 1 0 30 0 12 184 0 1 441 chain 4034 chr2 243199373 + 105229311 105229364 MADE1 96 - 26 95 206864 8 0 16 45 chain 525224 chr2 243199373 + 105240218 105246633 L1PA7 6471 - 3 6465 4666 9 6 0 27 3 4 108 10 12 77 0 2 519 0 22 42 7 8 17 1 0 71 0 2 5 2 3 862 0 4 53 1 0 44 0 13 76 0 1 301 0 1 63 3 0 548 0 3 18 0 4 63 0 2 815 0 11 17 13 0 35 11 22 62 0 2 396 1 3 50 0 1 29 0 5 1631 0 2 15 9 0 81 7 1 144 1 2 49 23 15 90 chain 100968 chr2 243199373 + 105261405 105262547 L1PA4 6152 + 5001 6143 36518 1142 chain 3029 chr2 243199373 + 105303579 105303611 MER45C 884 + 130 162 224411 32 chain 217115 chr2 243199373 + 105327491 105330895 L1MA2 4263 - 149 3793 18049 9 1 0 46 49 43 51 25 29 130 19 11 133 1 0 69 39 34 386 15 19 260 0 1 60 0 1 62 0 1 72 9 12 25 315 0 15 0 1 264 1 10 52 0 557 216 9 11 48 1 0 167 1 2 265 2 1 273 0 3 256 45 36 13 chain 20289 chr2 243199373 + 105336333 105336587 THE1B-int 1605 + 0 254 126256 254 chain 25186 chr2 243199373 + 105336819 105337117 L1PA5 6144 + 5844 6142 103821 148 1 2 137 1 0 11 chain 24083 chr2 243199373 + 105346563 105346842 AluY 311 + 15 295 109846 117 0 1 162 chain 4139 chr2 243199373 + 105369434 105369526 L1MA4 2864 + 2595 2686 205369 43 27 28 5 2 0 15 chain 3924 chr2 243199373 + 105401482 105401560 MER5A1 166 + 75 154 208514 45 18 19 15 chain 2928 chr2 243199373 + 105441103 105441179 HAL1-2a_MD 234 - 9 212 226556 5 3 0 15 16 131 18 0 15 19 chain 25082 chr2 243199373 + 105494106 105494413 AluSc5 308 - 0 308 104396 103 9 10 195 chain 10479 chr2 243199373 + 105502554 105502678 MER41B 635 + 511 635 158344 124 chain 42062 chr2 243199373 + 105502966 105503847 MER41A 554 - 0 554 66543 38 0 2 33 7 12 39 341 7 423 chain 89034 chr2 243199373 + 105542490 105543559 L1PA7 6471 + 5388 6457 39987 233 1 0 334 0 9 311 9 1 181 chain 3536 chr2 243199373 + 105559642 105559690 L1MA6 2487 + 2343 2388 214765 35 3 0 10 chain 526919 chr2 243199373 + 105570070 105576209 L1PA6 6164 - 3 6164 4512 7 2 0 138 0 1 559 0 2 797 0 5 1129 1 0 358 4 5 160 0 1 41 4 1 623 1 2 41 0 1 192 1 0 1274 0 17 124 0 1 217 7 6 459 chain 34961 chr2 243199373 + 105604173 105604630 L1PA8 5853 + 5369 5853 76246 165 0 7 23 1 0 44 2 0 55 1 0 4 0 26 47 2 1 19 2 1 92 chain 24932 chr2 243199373 + 105611681 105612002 THE1A 353 - 32 353 105149 19 0 1 159 1 0 32 7 6 21 0 1 82 chain 12589 chr2 243199373 + 105624213 105624358 MER107 203 - 58 203 149888 145 chain 304877 chr2 243199373 + 105627907 105632253 L1PB1 5432 - 2 3959 13212 7 2 0 19 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 17 14 33 40 1 0 16 2 1 53 2 0 8 5 1 20 1 0 24 1 0 12 1 0 4 0 4 389 0 2 72 0 2 152 0 1 313 2 0 206 5 6 127 0 4 88 2 4 91 54 0 293 1 2 47 0 12 143 17 1 168 11 10 137 2 0 616 345 0 344 3 0 5 1 7 5 0 1 373 chain 81023 chr2 243199373 + 105644496 105645776 L1PA16 3655 + 2298 3590 43184 283 0 1 92 1 0 51 1 2 93 126 133 247 6 5 77 23 30 24 27 28 25 0 1 24 8 7 156 3 0 13 chain 5516 chr2 243199373 + 105645983 105646063 L1MB3 1562 + 1336 1413 189878 16 4 1 60 chain 51883 chr2 243199373 + 105652797 105653454 MER4E1 777 - 8 776 57693 27 1 0 171 0 92 42 0 1 88 0 19 293 1 0 18 0 1 16 chain 14319 chr2 243199373 + 105664332 105664489 L1PA3long 6157 - 493 650 143501 157 chain 43578 chr2 243199373 + 105664489 105664966 L1PA3long 6157 + 5677 6153 64708 147 1 0 329 chain 4128 chr2 243199373 + 105695415 105695520 MER106A 234 + 77 178 205545 36 21 19 24 1 2 5 2 0 10 1 0 5 chain 4171 chr2 243199373 + 105722604 105722652 L1PA4 6152 + 6087 6136 204962 30 0 1 18 chain 3507 chr2 243199373 + 105743150 105743205 MER41B 635 + 481 537 215255 26 5 6 24 chain 23753 chr2 243199373 + 105757374 105757633 L1PA2 6032 + 5773 6032 111756 259 chain 26620 chr2 243199373 + 105787644 105787995 THE1A 353 - 0 353 97596 243 2 1 10 12 15 84 chain 131051 chr2 243199373 + 105787996 105789887 THE1A-int 1579 - 1 1578 27845 297 316 0 729 1 3 548 chain 30854 chr2 243199373 + 105799049 105799503 L1MA2 4263 - 205 671 82760 18 0 5 70 12 9 150 16 13 38 8 19 42 0 1 59 0 1 41 chain 34488 chr2 243199373 + 105809254 105809782 L1PB4 2604 + 2087 2570 76928 262 4 1 5 0 3 19 17 13 162 41 0 18 chain 19874 chr2 243199373 + 105816060 105816373 THE1B 368 + 0 340 127579 8 0 1 19 1 2 14 0 15 109 1 0 30 36 46 86 0 1 9 chain 9505 chr2 243199373 + 105818683 105818816 MSTA 426 - 21 177 163043 28 0 1 51 0 1 7 3 24 44 chain 551250 chr2 243199373 + 105822261 105830945 L1PA3long 6157 - 0 6157 1283 168 0 1 154 3 0 178 1 0 622 0 1 1770 0 2 734 2535 0 1335 0 3 621 0 4 411 1 2 151 chain 19638 chr2 243199373 + 105825914 105826121 SVA_F 1814 - 0 207 128289 207 chain 171977 chr2 243199373 + 105826122 105828362 SVA_E 1901 - 0 1901 21818 532 0 1 441 4 0 110 244 0 5 1 0 27 89 0 130 0 1 203 0 2 125 3 0 179 2 0 145 chain 9875 chr2 243199373 + 105827241 105827400 SVA_E 1901 - 769 909 144877 37 58 38 4 0 1 60 chain 1732 chr2 243199373 + 105827278 105827336 SVA_E 1901 - 885 943 153830 58 chain 2629 chr2 243199373 + 105827400 105827453 SVA_E 1901 - 734 787 92027 53 chain 4415 chr2 243199373 + 105827486 105827575 SVA_E 1901 - 819 905 92027 74 3 0 12 chain 3362 chr2 243199373 + 105843749 105843786 MLT1C 463 + 57 94 217837 37 chain 7843 chr2 243199373 + 105863651 105863768 MER21B 843 - 120 235 172061 16 0 5 10 5 0 65 2 0 19 chain 119362 chr2 243199373 + 105867071 105868590 SVA_D 2077 + 0 2056 31276 25 5 0 472 37 0 19 0 37 17 7 10 44 76 0 66 3 1 33 0 3 34 3 0 51 0 615 18 2 0 531 0 4 76 chain 2313 chr2 243199373 + 105867573 105867610 SVA_D 2077 + 653 690 152696 37 chain 2531 chr2 243199373 + 105867697 105867773 SVA_D 2077 + 468 544 149771 76 chain 44987 chr2 243199373 + 105873146 105873692 MER41A 554 + 0 554 63070 24 0 1 68 0 1 10 0 1 79 1 2 222 0 4 142 chain 17436 chr2 243199373 + 106028042 106028290 AluSz 310 + 28 294 134418 108 24 42 116 chain 115984 chr2 243199373 + 106040064 106041475 L1PA7 6471 + 5041 6457 32464 153 1 0 4 6 7 309 1 0 42 2 1 36 0 1 542 0 1 43 0 5 113 18 0 8 0 18 133 chain 93221 chr2 243199373 + 106041482 106042513 LTR5A 1029 + 0 1029 38591 149 1 0 59 1 0 821 chain 29672 chr2 243199373 + 106079038 106079348 AluYa5 310 - 0 310 85940 310 chain 45953 chr2 243199373 + 106084282 106084918 MER41B 635 + 0 635 62079 126 0 1 26 8 4 28 7 8 257 19 18 130 0 1 16 5 6 14 chain 59169 chr2 243199373 + 106145560 106146266 L1PA5 6144 - 7 711 53297 106 1 0 43 1 0 4 3 4 543 1 0 4 chain 35032 chr2 243199373 + 106151624 106152010 L1PA2 6032 - 0 386 76142 386 chain 6576 chr2 243199373 + 106152010 106152079 L1P1 4361 + 4059 4128 180643 69 chain 97035 chr2 243199373 + 106202850 106203914 L1PA2 6032 - 1 1057 37554 139 8 1 912 1 0 4 chain 33855 chr2 243199373 + 106267279 106267782 MER1A 529 - 0 498 77849 63 2 1 12 11 10 267 5 8 72 4 0 6 6 10 39 6 0 10 chain 5567 chr2 243199373 + 106290097 106290246 MER30 238 - 5 169 189407 38 3 0 21 39 65 11 13 5 24 chain 2995 chr2 243199373 + 106291803 106291900 FordPrefect 1504 - 594 692 225124 30 51 52 16 chain 10289 chr2 243199373 + 106298798 106299005 Tigger5 388 - 26 206 159188 63 3 1 27 1 0 11 2 0 16 19 18 35 21 0 9 chain 29566 chr2 243199373 + 106303362 106303711 L1PA6 6164 + 5812 6162 86356 253 0 1 96 chain 19193 chr2 243199373 + 106341097 106341550 L1PB1 5432 + 5015 5402 129547 26 2 1 18 1 2 36 70 16 23 1 0 7 1 0 12 20 14 50 5 21 40 1 0 9 19 7 30 2 0 5 1 0 14 2 0 24 1 0 22 1 0 10 chain 4070 chr2 243199373 + 106366533 106366895 MLT1B 390 - 54 383 206319 9 21 0 36 251 237 27 7 9 11 chain 75899 chr2 243199373 + 106434024 106434877 L1PA5 6144 + 5269 6126 45545 25 0 3 459 0 1 369 chain 216724 chr2 243199373 + 106514944 106518119 L1PA13 3608 - 120 3268 18073 22 1 0 18 2 0 5 2 0 47 3 1 4 1 0 27 0 1 7 2 1 19 1 0 63 2 0 55 0 7 51 1 0 32 1 0 83 39 23 103 0 1 80 0 7 95 3 8 103 8 12 248 0 1 6 0 4 45 1 0 153 0 1 160 0 5 42 2 0 43 0 2 10 6 4 126 0 3 190 4 5 5 1 0 103 33 36 92 18 21 107 0 1 80 0 4 8 9 14 47 0 1 108 42 6 112 1 4 100 0 1 4 7 6 73 2 0 42 22 21 36 1 0 17 2 0 18 2 0 14 32 27 12 2 0 17 1 0 16 1 0 72 chain 40980 chr2 243199373 + 106538103 106539070 L1PA16 3655 + 2796 3589 67935 107 1 0 5 0 7 7 1 0 60 0 2 50 0 196 10 1 0 5 0 1 35 4 0 6 1 3 100 371 0 131 1 0 58 3 0 10 chain 6144 chr2 243199373 + 106562233 106562326 L1MB3 1562 + 1334 1425 184038 4 1 0 6 0 1 6 1 0 70 1 0 4 chain 27749 chr2 243199373 + 106584890 106585231 MER48 407 - 64 407 93870 15 0 1 53 0 1 273 chain 37835 chr2 243199373 + 106595562 106596023 LTR2 463 - 0 463 72357 94 0 1 237 1 4 62 2 0 65 chain 410240 chr2 243199373 + 106596023 106600987 Harlequin-int 5206 - 0 4981 9793 773 2 13 281 0 1 183 0 3 85 0 3 271 39 41 894 18 3 1586 0 1 104 0 8 111 0 1 166 1 0 8 0 1 186 3 2 180 0 1 11 28 30 34 chain 34761 chr2 243199373 + 106602356 106602817 LTR2 463 - 0 463 76522 94 0 1 135 23 23 63 0 1 146 chain 62075 chr2 243199373 + 106603274 106604025 MER4E 760 + 0 752 51864 170 1 0 52 0 1 446 0 1 82 chain 60123 chr2 243199373 + 106604174 106604934 MER4E1 777 - 8 777 52758 211 9 17 150 0 1 280 0 1 4 1 0 105 chain 48981 chr2 243199373 + 106606098 106606711 LTR14B 630 + 10 630 59765 302 0 3 140 0 4 171 chain 72803 chr2 243199373 + 106606918 106607906 HERVK14-int 1672 + 5 1458 47124 23 4 3 10 1 0 49 7 6 189 21 20 28 2 1 234 1 0 47 1 0 203 2 1 150 0 473 16 chain 49818 chr2 243199373 + 106610652 106611266 LTR14B 630 + 10 630 59144 9 0 2 434 0 4 171 chain 9382 chr2 243199373 + 106643620 106643735 L1PB4 2604 + 2169 2284 163646 115 chain 18156 chr2 243199373 + 106653282 106653514 L1PA7 6471 + 6231 6461 132446 89 0 1 76 3 1 34 2 1 28 chain 17620 chr2 243199373 + 106674297 106674505 L1PA7 6471 + 6256 6464 133934 208 chain 560929 chr2 243199373 + 106747348 106753370 L1PA2 6032 + 0 6021 315 3087 1 0 2934 chain 20009 chr2 243199373 + 106759635 106759893 AluY 311 + 53 311 127115 70 1 0 9 11 12 167 chain 43089 chr2 243199373 + 106784188 106785043 MER41A 554 + 0 554 65303 134 307 0 169 0 1 164 1 6 80 chain 11970 chr2 243199373 + 106813695 106813838 THE1D 372 + 217 360 152322 143 chain 37918 chr2 243199373 + 106825669 106826161 LTR17 781 + 255 774 72254 19 4 10 43 1 0 401 12 34 12 chain 304842 chr2 243199373 + 106827648 106831481 HERV17-int 4347 + 817 4347 13213 140 4 5 140 0 2 366 1 2 90 1 0 702 0 3 419 0 1 83 0 1 153 0 1 88 0 1 183 0 1 261 6 8 562 316 0 318 chain 26735 chr2 243199373 + 106831789 106832132 LTR17 781 + 0 326 97203 57 25 0 134 1 9 126 chain 21447 chr2 243199373 + 106837317 106837574 AluY 311 + 29 287 122342 101 1 2 155 chain 15527 chr2 243199373 + 106850532 106851289 L1M1 2793 + 811 1555 46333 20 2 0 8 1 0 53 4 2 8 1 0 21 0 2 47 0 1 30 1 0 113 46 50 14 1 0 44 8 0 26 4 0 19 2 0 4 6 0 82 13 17 159 0 4 20 chain 83622 chr2 243199373 + 106851466 106852565 MER11A 1151 - 0 1150 42066 225 8 9 57 43 0 24 5 2 144 5 6 390 4 0 140 0 99 54 chain 10686 chr2 243199373 + 106853636 106854157 L1M1 2793 + 2159 2650 46333 30 0 1 82 0 1 4 2 1 56 0 1 11 0 1 68 12 10 9 1 0 69 29 0 99 4 5 22 1 0 6 1 0 15 chain 51554 chr2 243199373 + 106858074 106858699 LTR14B 630 - 0 630 57923 63 0 5 562 chain 6900 chr2 243199373 + 106862260 106862341 MER4C 627 - 8 89 178191 81 chain 15838 chr2 243199373 + 106908736 106908933 Tigger2a 444 - 142 339 138833 197 chain 7481 chr2 243199373 + 106911218 106911519 L1MA4 2864 - 60 298 174262 37 2 0 14 125 67 15 57 54 51 chain 28619 chr2 243199373 + 106918621 106918922 AluYa5 310 - 9 310 90657 301 chain 16879 chr2 243199373 + 106928992 106929200 L1PA7 6471 + 6266 6470 135890 32 5 0 15 1 2 155 chain 42186 chr2 243199373 + 106936712 106937319 LTR12F 595 - 0 595 66413 243 15 5 132 16 40 31 3 1 15 25 0 24 0 1 103 chain 21801 chr2 243199373 + 106941484 106942239 LTR64 526 - 35 478 121013 37 94 112 86 32 7 16 306 3 130 0 1 11 3 0 40 chain 73406 chr2 243199373 + 106946772 106947793 MER11A 1151 - 8 1151 46831 155 6 7 60 1 2 35 18 0 22 31 64 108 5 6 140 0 7 93 0 1 115 0 2 32 4 0 64 1 0 71 1 100 59 chain 53743 chr2 243199373 + 106949597 106950319 LTR12 884 - 0 884 56507 126 6 14 35 1 0 246 1 0 4 6 7 52 0 22 40 0 1 96 0 132 109 chain 22249 chr2 243199373 + 106991832 106992109 AluSp 311 - 23 311 119121 133 6 17 138 chain 20427 chr2 243199373 + 107019290 107019526 AluY 311 + 69 306 125822 63 0 1 173 chain 25514 chr2 243199373 + 107033365 107033728 MLT2A1 477 + 0 379 102166 65 1 0 77 6 7 19 1 5 160 21 33 13 chain 10661 chr2 243199373 + 107056419 107056554 L1MB8 1703 + 1439 1576 157556 43 0 2 92 chain 25139 chr2 243199373 + 107061470 107061761 AluY 311 + 0 299 104070 50 0 8 241 chain 23570 chr2 243199373 + 107062272 107062557 AluSp 311 + 10 295 112739 10 1 0 210 0 1 64 chain 21857 chr2 243199373 + 107089903 107090237 Tigger1 2417 - 586 876 120796 33 0 8 21 22 0 3 30 0 225 chain 39371 chr2 243199373 + 107124916 107125472 MER51C 639 - 0 581 70217 93 0 1 4 13 24 42 20 19 65 1 0 211 4 19 103 chain 2500 chr2 243199373 + 107125483 107125525 MER51C 639 - 520 578 233139 5 3 19 34 chain 3631 chr2 243199373 + 107125525 107125599 MER51C 639 - 507 581 177356 74 chain 10535 chr2 243199373 + 107131492 107131619 MLT2A2 560 - 433 560 158117 127 chain 12645 chr2 243199373 + 107136137 107136314 MER30 238 - 0 192 149656 114 15 30 48 chain 21461 chr2 243199373 + 107143099 107143385 AluSq2 311 - 5 299 122295 17 2 0 78 0 1 65 10 19 114 chain 50815 chr2 243199373 + 107176193 107176776 LTR10C 591 + 6 591 58424 504 0 2 79 chain 17837 chr2 243199373 + 107189565 107190305 LTR24 460 + 0 460 133281 15 0 3 9 15 0 21 43 45 24 13 10 6 0 3 63 318 14 25 11 26 30 12 24 40 29 36 66 chain 33691 chr2 243199373 + 107193599 107194045 LTR12F 595 - 0 595 78103 71 0 5 152 0 1 126 11 154 86 chain 4228 chr2 243199373 + 107201550 107201641 LTR12C 1709 + 676 1037 204200 42 8 102 17 7 183 17 chain 2594 chr2 243199373 + 107209014 107209075 MER63D 473 + 4 62 231770 16 22 19 23 chain 23483 chr2 243199373 + 107211705 107212044 THE1B 368 - 20 368 113205 105 29 42 7 3 0 26 1 0 168 chain 30512 chr2 243199373 + 107234784 107235206 LTR7B 505 - 9 505 83402 42 14 13 30 0 2 44 1 0 83 0 2 28 3 27 12 0 38 60 0 10 16 1 0 37 0 1 51 chain 35676 chr2 243199373 + 107244660 107245121 LOR1a 498 + 0 498 75297 47 0 1 205 1 34 141 0 3 67 chain 3951 chr2 243199373 + 107245448 107245499 MER2 342 - 67 120 208117 45 0 2 6 chain 105759 chr2 243199373 + 107279629 107281095 THE1D-int 1627 + 12 1618 35316 317 1 118 65 10 11 73 0 13 40 0 3 6 26 23 21 1 2 93 1 2 168 10 11 12 0 1 184 0 1 13 21 22 106 0 3 238 1 0 14 0 1 45 chain 194615 chr2 243199373 + 107291359 107294565 L1PA10 4194 - 33 2640 19615 11 1 0 29 9 6 8 0 1 12 479 9 19 0 3 326 179 29 95 0 1 57 0 3 337 0 1 41 1 11 32 0 1 171 1 0 5 0 3 211 0 1 22 2 1 32 3 7 46 0 1 128 0 6 735 1 0 17 2 0 102 7 2 85 chain 12244 chr2 243199373 + 107292282 107292430 L1PA10 4194 + 3325 3473 151239 148 chain 49718 chr2 243199373 + 107297083 107297638 L1PA4 6152 - 11 566 59218 555 chain 7486 chr2 243199373 + 107297638 107297718 L1P1 4361 + 4225 4305 174230 80 chain 13122 chr2 243199373 + 107306526 107306734 THE1D 372 - 28 265 147761 66 0 10 30 3 19 26 24 27 59 chain 17215 chr2 243199373 + 107334962 107335179 L1PREC2 3366 - 2167 2384 135002 217 chain 17074 chr2 243199373 + 107336611 107336862 L1MC2 1988 - 869 1114 135395 54 12 4 62 3 5 120 chain 30810 chr2 243199373 + 107338816 107339188 Tigger2 2703 - 58 430 82848 372 chain 28333 chr2 243199373 + 107384676 107385026 L1PB 1623 + 604 954 91822 350 chain 36849 chr2 243199373 + 107389274 107389733 MER4A1 472 - 11 472 73737 431 1 0 8 0 1 5 0 2 14 chain 25130 chr2 243199373 + 107390042 107390336 AluSp 311 - 15 309 104126 294 chain 3597 chr2 243199373 + 107409672 107409712 MSTA 426 - 386 426 213698 40 chain 24895 chr2 243199373 + 107421012 107421325 AluY 311 + 0 310 105375 10 3 0 122 0 1 31 1 0 146 chain 3888 chr2 243199373 + 107463636 107463751 MER5C1 258 - 141 257 209052 43 54 55 18 chain 30427 chr2 243199373 + 107504745 107505063 AluYb8 318 + 0 318 83593 318 chain 135892 chr2 243199373 + 107517268 107518758 L1PA2 6032 - 3 1491 26858 10 2 0 137 0 1 191 1 0 1149 chain 296788 chr2 243199373 + 107526321 107529851 L1P2 5180 + 660 4227 13603 127 8 6 140 0 25 450 6 1 6 0 5 970 0 4 166 1 0 616 0 1 517 1 10 187 0 1 335 chain 69673 chr2 243199373 + 107542973 107543992 MER11A 1151 - 0 1145 48538 135 34 35 60 0 1 36 18 0 22 8 41 42 2 4 90 0 3 143 0 1 56 0 16 24 20 21 126 4 0 67 1 0 50 8 0 24 0 99 49 chain 39735 chr2 243199373 + 107552709 107553249 MLT2A2 560 - 4 554 69705 143 6 18 5 1 0 210 12 11 163 chain 221764 chr2 243199373 + 107561768 107564283 L1PA4 6152 + 3619 6146 17768 61 3 2 1330 0 1 21 1 0 604 0 1 116 0 3 277 1 0 4 1 11 96 chain 7348 chr2 243199373 + 107564564 107564709 MLT1A1 405 - 15 160 175112 78 0 1 8 41 40 18 chain 12550 chr2 243199373 + 107568483 107568632 L1PA8A 6298 - 369 518 150043 149 chain 20611 chr2 243199373 + 107624895 107625145 L1PA4 6152 - 0 243 125257 176 7 0 67 chain 13208 chr2 243199373 + 107628068 107628344 MSTA 426 + 0 296 147429 97 27 51 36 56 52 12 9 9 39 chain 27401 chr2 243199373 + 107630977 107631364 MLT2A1 477 + 0 397 94966 168 5 2 34 1 0 72 0 3 16 6 7 72 1 11 12 chain 27060 chr2 243199373 + 107650964 107651277 L1PA4 6152 - 1 315 96078 149 1 2 163 chain 22520 chr2 243199373 + 107661038 107661317 AluY 311 + 21 301 117930 256 4 5 19 chain 5056 chr2 243199373 + 107665045 107665103 L1MA2 4263 + 723 781 194570 58 chain 173376 chr2 243199373 + 107668038 107670281 L1PA8 5853 + 3599 5853 21669 26 0 1 9 14 11 220 1 5 184 0 1 176 0 5 103 1 0 19 5 6 61 0 4 570 11 9 493 1 2 60 1 0 43 3 1 67 16 13 6 0 1 33 8 14 17 4 3 91 chain 200099 chr2 243199373 + 107674350 107677177 L1PB1 5432 - 9 2691 19201 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 24 12 16 1 0 59 2 1 34 85 29 11 1 0 8 1 0 24 67 16 7 0 4 274 1 0 4 0 4 7 2 0 173 3 0 584 3 0 309 2 3 667 0 1 218 31 17 85 chain 24306 chr2 243199373 + 107722708 107723004 AluSp 311 - 17 311 108629 162 2 0 132 chain 19571 chr2 243199373 + 107726886 107727264 MSTA 426 - 0 426 128457 109 3 24 44 27 25 16 3 0 5 3 4 51 54 85 63 chain 54975 chr2 243199373 + 107735966 107736643 L1PA7 6471 - 3 681 55719 170 1 0 165 1 2 256 0 1 84 chain 3289 chr2 243199373 + 107738531 107738572 MER20B 722 - 437 478 219203 41 chain 520268 chr2 243199373 + 107755732 107761848 L1PA5 6144 - 2 6143 5127 29 0 1 281 7 10 124 5 6 1140 0 1 1271 1 0 115 2 0 783 0 4 63 3 1 378 2 0 325 13 14 426 9 0 577 0 15 85 0 1 358 0 14 119 chain 24815 chr2 243199373 + 107772418 107772771 L1PA8 5853 + 5506 5853 105805 58 1 0 44 2 0 46 3 4 20 2 1 14 9 8 39 2 1 19 1 0 93 chain 123819 chr2 243199373 + 107805660 107807017 L1PA4 6152 + 4781 6139 29760 1222 0 1 135 chain 9598 chr2 243199373 + 107825075 107825187 L1PA4 6152 + 6035 6152 162610 106 0 5 6 chain 42643 chr2 243199373 + 107846191 107846871 L1PB2 3958 - 120 811 65849 63 1 0 93 1 0 14 0 1 44 16 15 45 19 20 92 5 0 12 2 0 63 3 0 5 16 38 52 1 0 21 1 2 111 chain 293946 chr2 243199373 + 107852193 107856023 L1PA8 5853 + 108 5853 13767 121 1 0 4 0 1 64 12 15 92 1 3 232 3 0 17 1 0 6 0 1 55 11 32 247 24 1910 13 1 0 14 0 4 278 1 0 298 7 5 22 1 2 55 0 1 557 0 3 366 0 1 48 0 1 4 1 0 183 3 9 234 0 3 81 1 0 4 0 1 410 2 0 59 1 0 44 2 0 71 1 0 11 1 0 49 3 2 19 1 0 93 chain 17690 chr2 243199373 + 107888108 107888407 THE1D 372 + 66 372 133728 45 0 1 24 1 2 28 43 49 117 9 8 32 chain 529074 chr2 243199373 + 107910276 107916426 L1PA4 6152 - 0 6152 4292 533 7 2 311 1 5 378 5 0 294 7 6 267 0 2 327 1 2 246 0 1 220 0 1 139 0 1 252 1 0 316 0 1 6 0 1 179 0 1 1772 3 4 735 14 0 9 1 15 126 chain 11053 chr2 243199373 + 107919144 107919277 AluSp 311 + 152 285 155998 133 chain 45927 chr2 243199373 + 107929055 107929585 L1PA4 6152 + 5618 6152 62106 280 2 1 242 0 5 6 chain 4078 chr2 243199373 + 107931348 107931403 L1MC2 1988 - 97 152 206212 44 1 0 6 0 1 4 chain 5536 chr2 243199373 + 107946939 107947007 L1PA16 3655 - 89 157 189709 68 chain 4353 chr2 243199373 + 108009325 108009562 LTR12C 1709 + 928 1037 202549 39 112 21 16 50 13 20 chain 11090 chr2 243199373 + 108049351 108049471 L1PA2 6032 + 5909 6029 155839 120 chain 30395 chr2 243199373 + 108065657 108066087 MER1A 529 - 5 432 83691 59 34 36 87 4 0 207 9 8 30 chain 3509 chr2 243199373 + 108071594 108071639 L1MC2 1988 - 2 46 215217 40 1 0 4 chain 5006 chr2 243199373 + 108085435 108085525 LTR12C 1709 - 892 984 195076 25 0 2 17 15 0 7 0 15 26 chain 5634 chr2 243199373 + 108103930 108104035 MER44D 709 + 37 136 188727 13 24 18 68 chain 22383 chr2 243199373 + 108104784 108105025 AluYk11 308 - 4 245 118571 241 chain 52857 chr2 243199373 + 108120617 108121569 PABL_A 660 + 0 658 57099 179 0 1 47 296 1 219 2 0 126 0 2 83 chain 12851 chr2 243199373 + 108152233 108152457 LTR12C 1709 - 672 936 148842 20 0 41 44 6 47 9 41 0 39 1 0 64 chain 87226 chr2 243199373 + 108189191 108190203 LTR13 1007 + 0 1007 40680 425 10 5 577 chain 84900 chr2 243199373 + 108202805 108203775 L1PA5 6144 + 5167 6135 41553 127 0 1 416 1 0 180 1 0 104 1 0 140 chain 23472 chr2 243199373 + 108219494 108219842 MER1A 529 + 144 525 113265 51 7 12 143 11 38 68 14 15 54 chain 59176 chr2 243199373 + 108220362 108221180 L1PA7 6471 + 5715 6467 53295 295 55 7 340 18 0 110 chain 32023 chr2 243199373 + 108237273 108237705 MER41-int 2638 + 2201 2636 80832 162 0 2 79 21 22 170 chain 3890 chr2 243199373 + 108259813 108259859 MSTD 398 - 325 371 209016 46 chain 55035 chr2 243199373 + 108278353 108279428 MER4E1 777 - 9 777 55688 14 0 2 120 0 1 85 23 14 22 1 0 4 0 1 174 326 4 134 18 38 137 0 1 17 chain 44917 chr2 243199373 + 108284147 108284714 L1PA11 4918 + 3804 4376 63156 60 2 0 5 0 2 21 0 1 307 0 5 108 0 4 14 1 0 3 4 0 42 chain 24989 chr2 243199373 + 108299414 108299702 L1PA5 6144 - 5 293 104863 288 chain 38662 chr2 243199373 + 108342338 108342824 L1PA7 6471 + 5989 6470 71210 229 0 1 112 0 5 8 25 14 112 chain 25253 chr2 243199373 + 108346881 108347175 AluSp 311 - 6 300 103461 180 3 0 31 0 3 80 chain 108539 chr2 243199373 + 108363079 108364357 LTR12C 1709 - 0 1709 34551 172 4 102 207 0 4 65 0 47 104 0 278 204 0 2 408 0 2 114 chain 5114 chr2 243199373 + 108370070 108370133 LTR12_ 688 - 260 323 193930 63 chain 75522 chr2 243199373 + 108412030 108412851 L1PA2 6032 + 5211 6032 45759 821 chain 107092 chr2 243199373 + 108435059 108436289 L1PA4 6152 - 1 1318 34946 154 0 1 452 1 0 213 17 107 330 3 0 60 chain 10661 chr2 243199373 + 108472293 108472428 L1MB8 1703 - 127 264 157558 92 0 2 43 chain 25514 chr2 243199373 + 108495141 108495504 MLT2A1 477 - 98 477 102167 13 21 33 160 1 5 19 6 7 77 1 0 65 chain 50697 chr2 243199373 + 108525623 108526248 LTR14B 630 - 0 630 58507 78 4 9 543 chain 6900 chr2 243199373 + 108529805 108529886 MER4C 627 - 8 89 178190 81 chain 37493 chr2 243199373 + 108558737 108559358 MER9a3 513 - 0 513 72818 62 2 0 17 0 1 175 3 2 77 109 0 68 23 24 67 0 2 18 chain 383427 chr2 243199373 + 108559380 108563993 HERVK9-int 4720 - 31 4660 10656 32 13 14 1587 0 4 390 1 0 312 0 1 246 0 1 90 0 5 215 2 1 531 1 0 33 0 1 125 0 1 240 0 4 69 8 18 289 1 0 205 5 0 113 6 5 24 1 0 9 1 0 64 chain 37287 chr2 243199373 + 108564630 108565118 MER9a3 513 - 21 513 73103 54 13 14 48 0 1 119 1 0 78 0 1 154 0 1 8 0 1 13 chain 146135 chr2 243199373 + 108583637 108585274 L1PA3long 6157 - 0 1637 25074 259 1 0 664 0 1 713 chain 208015 chr2 243199373 + 108585274 108587571 L1PA3long 6157 + 3854 6152 18636 392 0 1 1905 chain 116020 chr2 243199373 + 108594654 108596085 L1PA7 6471 + 5042 6470 32447 396 2 1 182 1 0 686 6 7 147 2 0 9 chain 33815 chr2 243199373 + 108625815 108626245 L1PA8A 6298 - 7 434 77917 91 10 7 9 2 0 29 0 1 134 0 1 155 chain 12062 chr2 243199373 + 108632011 108632139 L1HS 6032 - 0 128 151931 128 chain 20611 chr2 243199373 + 108648516 108649187 LTR12C 1709 + 859 1542 125262 163 41 0 46 10 57 34 333 339 44 chain 4523 chr2 243199373 + 108648810 108648864 LTR12C 1709 + 674 728 183600 54 chain 26629 chr2 243199373 + 108679729 108680020 L1PA5 6144 - 1002 1293 96932 291 chain 87808 chr2 243199373 + 108680020 108681007 L1PA5 6144 + 5143 6135 40446 150 0 5 459 0 1 6 1 0 371 chain 95392 chr2 243199373 + 108694843 108695903 L1PA4 6152 - 0 1061 37986 334 0 1 726 chain 28408 chr2 243199373 + 108704378 108704730 THE1A 353 + 0 353 91548 19 0 1 90 1 0 82 0 1 160 chain 123718 chr2 243199373 + 108704730 108706309 THE1A-int 1579 + 0 1579 29804 310 8 7 250 0 1 123 1 0 287 13 14 587 chain 33976 chr2 243199373 + 108717902 108718366 LTR19A 502 - 0 502 77651 36 8 9 144 1 2 70 10 46 195 chain 176388 chr2 243199373 + 108726790 108729333 L1PA11 4918 - 2430 4903 21316 90 0 1 19 0 11 60 0 1 21 0 4 34 1 0 15 1 0 23 6 7 67 0 1 38 9 10 16 0 1 253 4 1 45 0 18 342 6 5 50 0 2 203 1 2 62 4 0 80 34 4 217 10 11 4 1 0 56 1 0 13 8 9 70 7 9 15 73 11 368 2 1 5 2 0 33 1 0 50 2 0 15 1 0 26 14 11 36 2 0 27 chain 5947 chr2 243199373 + 108758918 108759004 L1PREC2 3366 + 2786 2867 185717 20 1 0 44 1 0 4 3 0 13 chain 14230 chr2 243199373 + 108773551 108773701 AluYg6 310 + 160 310 143793 150 chain 39112 chr2 243199373 + 108787063 108787490 L1PA3long 6157 - 8 435 70587 427 chain 36726 chr2 243199373 + 108805857 108806342 LTR3B_ 500 + 12 500 73917 290 2 1 23 8 11 20 1 2 141 chain 4255 chr2 243199373 + 108809138 108809288 L1ME3A 1206 + 459 634 203823 21 83 108 46 chain 164427 chr2 243199373 + 108813255 108815095 L1PA4 6152 + 4000 5840 22755 1021 0 1 408 1 0 410 chain 521316 chr2 243199373 + 108819599 108825721 L1PA3long 6157 - 0 6157 5026 192 0 1 646 0 1 140 0 5 571 0 1 22 1 0 793 0 1 263 0 1 69 0 1 2209 0 1 6 1 0 353 1 3 171 1 8 108 12 13 256 22 23 145 0 14 140 chain 35648 chr2 243199373 + 108829900 108830351 L1P1 4361 - 3109 3546 75340 282 0 1 9 16 1 144 chain 40122 chr2 243199373 + 108830872 108831307 L1PA3long 6157 + 5722 6157 69151 435 chain 5532 chr2 243199373 + 108858026 108858092 HUERS-P3b-int 2065 - 1407 1473 189741 66 chain 4315 chr2 243199373 + 108874186 108874263 MER44A 345 + 237 308 203036 20 18 12 39 chain 21492 chr2 243199373 + 108891712 108891955 L1PA4 6152 + 5436 5680 122168 6 0 1 237 chain 41380 chr2 243199373 + 108891955 108892415 L1PA4 6152 + 5687 6151 67430 409 0 4 51 chain 3759 chr2 243199373 + 108895056 108895112 L1MB7 1623 + 1055 1110 210968 28 2 1 26 chain 3766 chr2 243199373 + 108896095 108896135 MER58A 224 + 42 82 210872 40 chain 17794 chr2 243199373 + 108897558 108897788 L1PA7 6471 - 4 234 133432 9 0 2 87 3 0 89 0 1 42 chain 35171 chr2 243199373 + 108900865 108901277 L1PA4 6152 - 0 414 75951 145 1 0 4 4 7 258 chain 5707 chr2 243199373 + 108916142 108916293 L1MB3 1562 + 1052 1197 188041 11 6 0 31 1 0 6 52 53 44 chain 124639 chr2 243199373 + 108927470 108929040 THE1B-int 1605 + 9 1605 29497 414 3 28 257 2 1 247 1 2 4 1 0 297 0 1 182 0 1 162 chain 51286 chr2 243199373 + 108932028 108932694 PABL_B 668 + 0 668 58126 78 0 5 95 5 3 7 0 1 29 3 4 15 1 0 44 1 0 126 6 3 108 0 2 148 chain 34507 chr2 243199373 + 108944656 108945052 L1PA7 6471 - 14 411 76893 135 1 2 260 chain 216316 chr2 243199373 + 108952786 108955184 L1PA4 6152 + 3753 6151 18098 2398 chain 280789 chr2 243199373 + 108957186 108961205 L1PA10 4194 - 44 3944 14599 33 7 4 28 6 4 352 0 1 101 4 1 6 0 6 39 8 0 142 0 1 238 28 2 61 1 3 189 47 0 179 0 1 27 1 3 19 0 1 26 3 7 26 3 2 23 0 3 45 6 9 140 0 1 201 14 17 82 5 0 183 0 1 45 14 16 101 21 14 7 2 0 107 1 0 5 0 2 118 5 6 127 0 3 300 0 1 573 8 4 24 4 2 85 21 10 13 1 0 10 19 16 19 78 49 15 2 0 21 chain 11099 chr2 243199373 + 108963988 108964329 L1MA6 2487 - 85 359 155809 4 1 0 20 3 0 33 181 118 99 chain 23342 chr2 243199373 + 108969180 108969548 THE1C 375 + 0 375 113971 106 9 11 13 5 9 46 29 30 160 chain 80339 chr2 243199373 + 108976106 108977469 L1PB 1623 + 117 1165 43458 56 328 19 77 1 0 134 1 0 8 1 0 76 5 4 67 1 0 385 3 2 220 chain 28991 chr2 243199373 + 108990149 108990500 MER11C 1089 + 692 1052 89033 89 1 9 136 2 3 57 1 0 11 0 1 54 chain 5398 chr2 243199373 + 108990898 108990967 MER53 195 - 111 180 191002 69 chain 52306 chr2 243199373 + 109010152 109010927 MER4-int 2692 - 1908 2691 57426 66 3 2 96 1 2 49 7 16 139 0 1 129 20 21 44 0 1 119 1 0 37 8 9 4 1 0 13 2 0 21 1 0 14 chain 8157 chr2 243199373 + 109044354 109044460 MLT1D 503 - 3 129 170185 94 0 20 12 chain 517260 chr2 243199373 + 109045603 109052578 L1PA7 6471 + 0 6470 5458 411 0 1 7 0 1 499 1 2 520 0 4 112 6 10 192 0 3 273 3 76 52 0 4 326 1 0 480 0 2 574 2 6 98 0 11 146 1 0 19 0 1 380 0 2 459 0 4 656 306 2 288 1 0 28 9 4 14 3 1 131 313 0 198 7 9 4 1 0 395 0 6 59 chain 31493 chr2 243199373 + 109053369 109053783 LOR1b 457 - 0 417 81654 256 6 7 36 0 2 8 2 0 53 0 1 28 0 1 25 chain 25870 chr2 243199373 + 109078277 109078592 AluYk4 311 - 0 311 100568 73 0 1 95 16 10 9 0 1 122 chain 45249 chr2 243199373 + 109101296 109101790 L1PA2 6032 + 5538 6032 62768 494 chain 24802 chr2 243199373 + 109112144 109112506 MLT2A1 477 - 98 477 105885 13 21 33 160 0 4 21 5 6 52 0 1 24 1 0 65 chain 36015 chr2 243199373 + 109140351 109140813 LTR2 463 + 0 463 74876 57 5 6 248 1 0 48 15 16 88 chain 418147 chr2 243199373 + 109142386 109147460 Harlequin-int 5206 + 135 5206 9582 170 0 1 63 5 1 102 1 0 10 5 0 364 0 1 160 1 0 57 3 0 110 9 0 118 2 1 59 0 2 352 0 5 312 0 2 9 11 9 213 7 6 496 0 1 62 0 16 835 5 4 486 37 37 914 4 0 33 7 8 52 chain 35848 chr2 243199373 + 109147460 109147919 LTR2 463 + 0 463 75061 355 23 24 37 0 3 44 chain 48754 chr2 243199373 + 109159770 109160376 PABL_A 660 + 0 658 59907 105 0 1 118 0 44 52 0 5 184 0 2 147 chain 33175 chr2 243199373 + 109173092 109173503 LTR3B 427 + 0 423 78947 26 1 0 82 0 1 173 0 1 44 2 8 34 0 5 49 chain 175044 chr2 243199373 + 109215793 109219948 L1MA2 4263 - 150 2692 21454 8 1 0 47 7 0 23 2 0 59 7 22 118 42 39 125 12 11 74 7 3 10 6 0 95 0 1 23 1 0 12 335 0 233 1 0 105 1 0 160 5 6 25 947 10 100 6 12 37 1 0 7 0 1 50 11 6 47 2 0 87 6 10 76 6 7 28 0 4 41 0 1 70 1 3 56 0 3 29 4 0 100 17 0 70 0 8 14 1 0 7 0 1 55 336 3 395 0 1 4 chain 45286 chr2 243199373 + 109217549 109218124 LTR66 600 - 0 600 62735 36 0 1 84 1 34 42 8 0 86 0 1 126 2 0 190 chain 19962 chr2 243199373 + 109251913 109252166 AluSg7 307 + 23 291 127269 37 1 15 56 0 1 159 chain 509410 chr2 243199373 + 109259657 109266401 L1PA7 6471 + 0 6438 6213 14 1 2 230 6 16 133 1 6 11 1 0 12 31 0 47 1 0 89 23 24 170 1 0 77 0 1 47 13 22 206 5 19 336 1 0 291 2 0 7 0 2 184 3 7 54 0 1 98 1 3 295 1 0 8 0 1 228 7 1 42 1 2 11 1 3 186 0 4 71 0 10 127 2 6 362 0 3 44 337 0 418 0 1 309 0 1 149 1 0 470 8 15 197 31 7 539 0 6 75 0 2 285 0 3 243 0 4 83 1 2 116 chain 9365 chr2 243199373 + 109284893 109285219 L1MA6 2487 - 85 346 163731 4 1 0 22 3 0 13 0 5 15 182 116 86 chain 27796 chr2 243199373 + 109310314 109310625 AluYk4 311 + 1 311 93709 131 1 0 179 chain 30222 chr2 243199373 + 109329682 109330000 AluYb9 318 + 0 318 84128 318 chain 9590 chr2 243199373 + 109330012 109330150 Tigger1 2417 - 982 1124 162641 48 0 3 66 5 6 19 chain 39271 chr2 243199373 + 109330826 109331405 PABL_A 660 - 0 481 70367 305 107 9 167 chain 3415 chr2 243199373 + 109334643 109334714 MER8 282 + 0 136 216850 39 18 83 14 chain 4246 chr2 243199373 + 109342908 109342957 MLT1B 390 - 46 95 203920 49 chain 55795 chr2 243199373 + 109343088 109343685 SVA_F 1814 - 3 600 55250 597 chain 14424 chr2 243199373 + 109343733 109343905 MER44C 733 + 450 622 143138 172 chain 10661 chr2 243199373 + 109364448 109364583 L1MB8 1703 - 127 264 157557 92 0 2 43 chain 8245 chr2 243199373 + 109379425 109379521 MER85 139 + 0 96 169710 96 chain 218186 chr2 243199373 + 109417082 109419441 L1PA2 6032 - 0 2359 17992 2359 chain 20426 chr2 243199373 + 109448800 109449034 AluSp 311 - 9 243 125826 234 chain 5895 chr2 243199373 + 109468146 109468294 MER21A 919 - 730 919 186235 11 12 0 24 1 0 31 7 26 11 4 5 17 0 1 4 9 42 17 chain 3885 chr2 243199373 + 109468525 109468588 MIR 256 - 20 90 209091 15 9 16 39 chain 3120 chr2 243199373 + 109478900 109478933 Tigger4b 360 - 325 358 222557 33 chain 7065 chr2 243199373 + 109491711 109491788 L1PA2 6032 + 5955 6032 176978 77 chain 21251 chr2 243199373 + 109530178 109530423 AluY 311 + 54 300 123015 78 0 1 167 chain 3593 chr2 243199373 + 109548026 109548067 MIR3 191 - 82 123 213766 41 chain 116204 chr2 243199373 + 109563323 109564900 THE1D-int 1627 - 1 1627 32373 28 5 4 52 5 6 16 0 6 92 19 25 54 17 15 31 5 8 261 12 27 119 0 2 5 7 5 140 0 20 334 1 3 336 2 1 36 chain 22719 chr2 243199373 + 109573240 109573532 AluSp 311 - 9 298 116988 32 4 3 135 2 0 119 chain 29477 chr2 243199373 + 109606605 109606914 AluYb8 318 + 0 309 86728 309 chain 7007 chr2 243199373 + 109632243 109632327 Tigger2a 444 + 254 338 177430 84 chain 25616 chr2 243199373 + 109637700 109637997 AluY 311 + 3 301 101639 129 1 2 167 chain 21196 chr2 243199373 + 109650134 109650426 AluSx1 309 + 8 297 123226 125 13 10 116 0 1 14 8 7 16 chain 14923 chr2 243199373 + 109706137 109706334 LOR1b 457 - 245 450 141568 43 1 0 38 1 0 89 1 11 24 chain 4134 chr2 243199373 + 109707429 109707479 MER96B 391 + 232 282 205450 50 chain 11604 chr2 243199373 + 109707911 109708055 LTR8 732 + 587 730 153873 99 1 0 44 chain 560776 chr2 243199373 + 109728090 109734235 L1PA3long 6157 - 0 6151 321 2610 0 3 882 0 3 2653 chain 11136 chr2 243199373 + 109734860 109734986 LTR22 571 - 0 126 155680 126 chain 7830 chr2 243199373 + 109734999 109735093 LTR22 571 + 477 571 172128 94 chain 32826 chr2 243199373 + 109778880 109779255 L1PA4 6152 - 9 572 79496 111 0 188 264 chain 29191 chr2 243199373 + 109779843 109780154 AluYa5 310 - 0 310 88095 184 1 0 126 chain 3507 chr2 243199373 + 109870810 109870848 MIR 256 + 101 139 215239 38 chain 177358 chr2 243199373 + 109923878 109925787 L1PA2 6032 - 0 1910 21203 627 0 1 1282 chain 206120 chr2 243199373 + 109925787 109928044 L1HS 6032 + 1844 4112 18783 361 0 11 1896 chain 41445 chr2 243199373 + 110093071 110093608 MER41A 554 - 0 554 67354 79 1 6 63 0 2 282 1 11 111 chain 36272 chr2 243199373 + 110253515 110254055 LTR12F 595 - 0 595 74531 20 0 3 51 0 62 9 0 1 19 0 3 13 3 4 8 0 8 179 38 5 25 0 9 32 3 1 39 6 9 95 chain 9708 chr2 243199373 + 110276796 110276986 MSTA 426 - 226 426 162045 31 3 1 9 48 59 83 0 1 16 chain 25353 chr2 243199373 + 110278524 110278811 AluYc3 301 + 0 288 102936 113 1 2 173 chain 21794 chr2 243199373 + 110279871 110280141 AluSq10 312 - 15 280 121041 118 10 5 142 chain 61660 chr2 243199373 + 110293495 110294280 THE1B-int 1605 + 826 1605 52054 82 0 3 34 0 1 7 1 0 8 13 0 49 9 12 220 0 1 88 1 0 30 1 0 175 0 2 67 chain 4803 chr2 243199373 + 110295612 110295669 MLT1D 503 - 108 165 197328 57 chain 33516 chr2 243199373 + 110313050 110313483 LTR3B_ 500 + 0 430 78380 179 7 0 118 6 5 73 1 6 49 chain 34144 chr2 243199373 + 110314364 110314756 L1PA5 6144 + 5751 6142 77418 140 1 0 251 chain 87909 chr2 243199373 + 110394414 110395428 LTR5A 1029 - 0 1029 40410 67 1 0 179 0 3 617 0 13 150 chain 15269 chr2 243199373 + 110400863 110401047 MER41A 554 + 0 185 140577 95 0 1 89 chain 15600 chr2 243199373 + 110408123 110408483 THE1B 368 + 0 367 139582 106 127 134 30 0 1 35 18 17 44 chain 36418 chr2 243199373 + 110447674 110448129 MER4A1 472 - 14 472 74344 86 2 5 367 chain 13079 chr2 243199373 + 110451326 110451492 MER4A1 472 + 278 458 147924 148 0 14 18 chain 16627 chr2 243199373 + 110451641 110451983 MSTA 426 + 5 362 136592 21 0 1 111 14 18 12 6 10 37 1 0 16 84 91 40 chain 2962 chr2 243199373 + 110452097 110452130 Tigger4a 237 + 138 171 225859 33 chain 2776 chr2 243199373 + 110470308 110470425 ORSL 269 - 73 193 229076 17 70 73 30 chain 5467 chr2 243199373 + 110473537 110473717 MER4C 627 - 0 268 190331 34 57 88 41 29 86 19 chain 21641 chr2 243199373 + 110481778 110482054 L1PA10 4194 - 33 315 121613 11 1 0 31 6 3 205 0 10 22 chain 25694 chr2 243199373 + 110487345 110487726 THE1D 372 - 0 372 101309 35 2 1 90 3 9 42 3 7 76 0 1 28 4 0 7 15 0 76 chain 7225 chr2 243199373 + 110499497 110499662 L1MC 810 + 110 253 175912 37 52 37 6 7 0 63 chain 9548 chr2 243199373 + 110578556 110578689 L1MB8 1703 - 127 264 162839 52 1 3 37 0 2 43 chain 24909 chr2 243199373 + 110601400 110601761 MLT2A1 477 - 98 477 105287 13 21 33 160 0 4 20 6 7 52 0 1 89 chain 82487 chr2 243199373 + 110649510 110651062 L1MA2 4263 - 150 1357 42544 8 1 0 47 7 0 19 2 0 63 7 22 118 42 39 125 12 11 48 0 10 4 10 0 12 7 3 10 6 0 95 0 1 23 1 0 12 335 0 233 1 0 105 1 0 160 0 1 38 chain 43815 chr2 243199373 + 110651236 110651810 LTR66 600 - 0 600 64433 36 0 1 84 1 34 42 8 0 86 0 1 84 5 6 36 2 0 190 chain 10375 chr2 243199373 + 110669664 110669985 L1MA6 2487 - 89 346 158804 22 3 0 13 0 5 15 136 86 25 21 5 86 chain 21162 chr2 243199373 + 110682498 110682746 AluY 311 + 55 300 123335 78 3 0 167 chain 50656 chr2 243199373 + 110688098 110688759 L1P3 4156 - 19 677 58533 21 1 0 9 8 6 512 3 0 5 1 4 101 chain 261136 chr2 243199373 + 110698259 110702363 L1PB2 3958 + 25 3835 15636 27 1 0 4 14 10 18 12 7 10 15 10 29 2 0 17 0 6 17 1 0 47 1 0 3 2 0 68 9 10 21 8 7 131 1 0 5 5 6 225 9 10 121 7 9 60 0 1 14 2 1 4 0 1 285 1 0 35 6 7 51 1 0 36 0 5 145 5 21 41 6 9 23 1 0 15 1 0 236 1 5 180 16 42 367 4 7 49 3 0 56 0 10 5 6 1 257 0 5 107 5 4 160 326 0 78 14 10 56 9 10 64 2 0 57 1 0 11 5 0 65 2 0 7 9 5 18 0 4 42 0 1 29 1 0 72 1 0 64 1 0 58 7 8 6 2 0 22 1 0 60 chain 528122 chr2 243199373 + 110710537 110716670 L1PA6 6164 + 0 6159 4388 233 0 1 275 2 1 75 9 17 1208 0 2 584 0 2 165 1 0 4 0 1 433 5 6 178 1 0 4 1 2 1171 0 4 1162 0 1 571 6 10 36 0 4 9 chain 3621 chr2 243199373 + 110759763 110759802 LTR54 533 - 2 41 213323 39 chain 224802 chr2 243199373 + 110775131 110777588 L1PA3long 6157 + 3699 6157 17610 1607 0 1 363 0 1 153 1 0 333 chain 3480 chr2 243199373 + 110810235 110810350 HAL1-2a_MD 234 - 120 207 215679 19 1 0 8 59 32 28 chain 40593 chr2 243199373 + 110812672 110813157 LTR10D 510 + 8 510 68452 67 2 1 14 0 17 273 0 1 129 chain 75181 chr2 243199373 + 110813646 110814605 LTR5_Hs 974 + 0 960 45937 11 1 0 448 0 4 195 1 2 9 1 3 225 0 2 5 3 0 46 4 0 10 chain 108069 chr2 243199373 + 110820998 110822234 SVA_B 1603 - 23 1603 34697 421 0 3 13 1 0 77 0 281 72 0 40 37 2 0 587 1 25 11 1 0 13 chain 148882 chr2 243199373 + 110829837 110831493 L1PA3long 6157 - 2028 3680 24745 233 9 1 720 0 4 694 chain 185589 chr2 243199373 + 110831493 110833521 L1PA3long 6157 + 4128 6157 20457 1881 0 1 147 chain 81236 chr2 243199373 + 110839771 110840810 MER11C 1089 + 6 1059 43069 49 5 8 187 8 9 54 0 4 373 0 4 5 1 0 38 0 1 90 1 0 37 0 1 123 1 3 67 chain 6659 chr2 243199373 + 110850203 110850277 L1PA4 6152 + 6062 6136 180006 74 chain 16798 chr2 243199373 + 110855821 110856248 L1MB3 1562 - 10 418 136121 29 1 0 4 6 5 43 8 7 26 2 0 5 34 8 4 1 0 23 34 47 20 10 11 84 2 0 5 40 41 46 chain 409626 chr2 243199373 + 110865334 110870727 L1PB1 5432 + 19 5327 9813 29 7 8 244 0 3 93 6 5 5 0 2 126 3 2 125 1 0 5 0 1 63 3 0 35 0 1 629 1 0 7 2 0 5 3 0 137 1 5 397 0 2 25 25 5 232 0 2 227 0 1 60 6 4 1110 1 0 113 16 5 259 0 1 634 3 0 79 0 2 105 2 1 290 43 11 19 2 1 13 16 11 11 2 0 51 2 1 16 1 0 44 1 0 15 1 0 5 18 7 19 chain 2348 chr2 243199373 + 110867286 110867311 L1PB1 5432 + 2616 2641 226850 25 chain 19591 chr2 243199373 + 110892854 110893081 AluY 311 + 82 310 128407 50 0 1 177 chain 213542 chr2 243199373 + 110893530 110895895 L1PA4 6152 + 3769 6143 18251 2120 0 1 110 1 4 128 0 5 6 chain 118805 chr2 243199373 + 110911968 110913519 THE1B-int 1605 + 17 1592 31484 148 2 0 257 7 34 146 1 2 5 1 0 176 0 1 120 1 0 11 10 11 92 2 0 393 0 1 4 2 1 65 5 4 11 0 1 92 chain 40607 chr2 243199373 + 110940720 110941216 MER9a3 513 + 15 513 68429 91 4 5 145 1 0 4 2 3 171 1 2 77 chain 131579 chr2 243199373 + 110944448 110946262 L1PA10 4194 + 2279 4114 27723 28 13 14 12 1 3 290 9 14 23 1 0 35 0 3 235 7 4 137 8 12 244 3 4 350 18 19 109 0 4 68 3 1 26 0 1 9 0 1 60 0 1 119 0 3 6 chain 124682 chr2 243199373 + 110946772 110948334 LTR12C 1709 - 0 1709 29481 82 1 0 399 11 4 106 4 2 4 1 0 245 0 118 284 0 1 83 0 43 45 41 37 256 chain 518346 chr2 243199373 + 110948615 110954506 L1PA4 6152 + 10 5916 5344 424 7 14 1387 0 1 1328 0 1 1183 0 4 292 0 1 878 0 1 392 chain 4261 chr2 243199373 + 110970776 110970873 MER3 215 - 46 162 203729 25 2 8 8 7 0 24 11 31 20 chain 21762 chr2 243199373 + 110971179 110971469 THE1B 368 - 61 360 121168 65 1 0 12 1 0 16 0 4 10 0 3 28 1 0 135 0 5 21 chain 54612 chr2 243199373 + 110975909 110976666 HERVH-int 3825 + 0 711 55960 491 1 0 39 6 1 39 1 0 10 1 0 9 8 4 10 60 28 24 2 1 41 1 0 14 chain 2397 chr2 243199373 + 110976524 110976549 HERVH-int 3825 + 545 570 217955 25 chain 43366 chr2 243199373 + 110978247 110978893 LTR66 600 - 0 600 64973 127 0 16 44 102 13 141 1 21 86 0 7 145 chain 238072 chr2 243199373 + 110983718 110986700 L1PA8 5853 - 0 2982 16880 15 2 3 74 2 1 18 3 2 51 1 0 10 1 0 71 2 0 44 1 0 43 0 1 421 6 5 37 0 3 10 0 4 29 0 2 21 8 11 99 5 0 204 0 1 186 1 0 145 4 3 1362 3 0 5 1 4 97 chain 526980 chr2 243199373 + 111008502 111014636 L1PA6 6164 + 0 6159 4503 233 0 1 275 2 1 75 9 17 1208 0 2 584 0 2 165 1 0 4 0 1 433 5 6 170 3 1 11 1 2 1171 0 4 1162 0 1 571 6 10 36 0 4 9 chain 51809 chr2 243199373 + 111031100 111031764 L1PA8 5853 - 6 669 57748 87 1 0 19 3 2 38 1 2 7 1 0 13 2 1 5 0 1 64 2 0 46 1 0 324 0 1 45 0 3 5 chain 6659 chr2 243199373 + 111036252 111036326 L1PA4 6152 - 16 90 180007 74 chain 81114 chr2 243199373 + 111045719 111046758 MER11C 1089 - 30 1083 43133 67 1 3 123 0 1 37 1 0 90 0 1 38 1 0 5 0 4 369 0 4 58 8 9 187 5 8 49 chain 183538 chr2 243199373 + 111053007 111055014 L1PA3long 6157 - 0 2029 20623 149 0 1 1431 0 21 427 chain 149296 chr2 243199373 + 111055014 111056670 L1PA3long 6157 + 2477 4129 24691 696 0 4 718 9 1 233 chain 108172 chr2 243199373 + 111064267 111065641 SVA_B 1603 + 0 1602 34658 13 1 0 11 1 25 465 116 0 113 3 0 5 3 4 50 0 40 17 0 281 119 1 0 13 0 3 443 chain 74896 chr2 243199373 + 111072014 111072973 LTR5_Hs 974 - 14 974 46065 10 4 0 48 6 5 225 1 3 9 1 2 196 0 4 451 1 0 7 chain 40943 chr2 243199373 + 111073462 111073947 LTR10D 510 - 0 502 67985 132 0 1 284 2 18 67 chain 3480 chr2 243199373 + 111076269 111076384 HAL1-2a_MD 234 + 27 114 215678 28 59 32 8 1 0 19 chain 224898 chr2 243199373 + 111108956 111111414 L1PA3long 6157 - 0 2458 17603 339 1 0 147 0 1 1971 chain 3621 chr2 243199373 + 111126743 111126782 LTR54 533 + 492 531 213322 39 chain 527756 chr2 243199373 + 111169972 111176105 L1PA6 6164 - 5 6164 4424 9 0 4 36 6 10 571 0 1 1162 0 4 1171 1 2 4 1 0 178 5 6 433 0 1 4 1 0 166 0 2 584 0 2 1207 9 17 75 2 1 275 0 1 233 chain 4720 chr2 243199373 + 111182374 111182444 LTR12F 595 + 47 130 198282 44 5 18 21 chain 261891 chr2 243199373 + 111184295 111188402 L1PB2 3958 - 123 3933 15594 60 1 0 22 2 0 6 7 8 58 1 0 64 1 0 77 1 0 25 0 1 41 0 4 18 25 19 58 5 0 11 1 0 57 2 0 64 9 10 56 14 10 71 325 0 167 5 4 107 0 5 257 8 13 59 3 0 49 4 7 367 16 42 421 1 0 15 1 0 23 6 9 41 5 21 145 0 5 36 1 0 51 6 7 35 1 0 285 0 1 4 2 1 14 0 1 60 7 9 121 9 10 225 5 6 5 1 0 131 8 7 21 9 10 68 2 0 3 1 0 47 1 0 17 0 6 19 2 0 27 15 10 10 12 7 18 14 10 4 1 0 27 chain 51458 chr2 243199373 + 111197902 111198563 L1P3 4156 + 3479 4137 57998 622 17 14 22 chain 9961 chr2 243199373 + 111216675 111217198 L1MA6 2487 + 2141 2478 160770 86 21 5 25 136 86 15 1 0 4 0 6 8 3 0 22 185 63 17 chain 42933 chr2 243199373 + 111234850 111235402 LTR66 600 + 0 578 65498 192 2 0 34 5 6 84 0 1 86 8 0 37 0 33 90 0 1 14 chain 84724 chr2 243199373 + 111235598 111237384 L1MA2 4263 + 2906 4218 41629 38 0 1 160 1 0 105 1 0 232 335 0 10 1 0 26 0 1 95 6 0 10 7 3 74 12 11 125 42 39 112 0 15 76 2 0 19 7 0 47 1 0 9 201 74 16 4 2 12 chain 19388 chr2 243199373 + 111270841 111271070 AluY 311 + 69 299 128977 63 0 1 166 chain 4391 chr2 243199373 + 111274988 111275096 MLT1F2 592 - 69 190 202079 27 23 35 30 12 13 16 chain 24909 chr2 243199373 + 111284899 111285260 MLT2A1 477 + 0 379 105286 89 0 1 52 6 7 20 0 4 160 21 33 13 chain 9548 chr2 243199373 + 111307971 111308104 L1MB8 1703 + 1439 1576 162838 43 0 2 37 1 3 52 chain 9120 chr2 243199373 + 111331862 111331960 L1PA2 6032 + 5931 6029 164969 98 chain 4539 chr2 243199373 + 111386969 111387032 L1MC2 1988 - 1910 1973 200339 8 1 0 36 0 1 18 chain 111066 chr2 243199373 + 111393104 111394372 L1PA5 6144 + 4861 6132 33915 174 0 3 40 1 2 214 1 0 838 chain 36901 chr2 243199373 + 111436873 111437374 LTR2C 499 + 0 499 73655 45 8 5 260 34 30 98 0 3 25 0 2 31 chain 21268 chr2 243199373 + 111438908 111439171 AluSg 306 + 6 271 122962 225 6 8 32 chain 16228 chr2 243199373 + 111439740 111440096 MER1B 344 - 0 344 137677 56 46 23 89 1 0 42 46 57 35 28 29 13 chain 53900 chr2 243199373 + 111445541 111446192 LTR6A 649 + 0 649 56427 435 1 0 193 0 1 9 2 0 11 chain 35230 chr2 243199373 + 111449401 111449839 LTR7C 471 + 0 471 75883 31 1 0 74 0 26 176 1 0 95 0 9 60 chain 43297 chr2 243199373 + 111452662 111453218 LTR19B 566 + 0 560 65056 301 0 1 21 10 14 157 0 2 21 7 4 39 chain 21662 chr2 243199373 + 111454758 111455079 L1P3 4156 + 1 321 121535 248 45 44 28 chain 51809 chr2 243199373 + 111455090 111455754 L1PA8 5853 + 5184 5847 57747 5 0 3 45 0 1 326 1 0 44 2 0 64 0 1 5 2 1 13 1 0 7 1 2 38 3 2 19 1 0 87 chain 4724 chr2 243199373 + 111459785 111459875 MER53 195 + 1 64 198226 54 27 0 9 chain 32453 chr2 243199373 + 111472397 111472797 MER57B1 401 + 0 399 80108 243 1 0 156 chain 48374 chr2 243199373 + 111504242 111504856 LTR71B 605 + 0 605 60199 137 2 0 5 4 3 8 5 0 120 2 0 10 0 1 321 chain 4885 chr2 243199373 + 111507843 111508016 L1MC3 1789 - 403 646 196423 9 1 0 27 48 39 31 35 115 22 chain 154261 chr2 243199373 + 111515142 111517206 L1PA11 4918 - 410 3694 24070 20 3 2 11 2 0 17 0 3 48 2 0 12 1 0 70 2 0 94 0 4 644 0 1204 12 1 5 103 0 8 54 4 6 59 1 0 4 1 2 239 0 1 70 4 1 158 6 5 293 8 13 63 8 9 50 chain 8867 chr2 243199373 + 111527479 111527623 AluJb 308 + 144 286 166296 53 13 12 51 6 5 21 chain 6847 chr2 243199373 + 111557083 111557193 MLT1B 390 - 5 123 178606 21 13 21 76 chain 43294 chr2 243199373 + 111557212 111557848 LTR12F 595 + 0 595 65061 103 0 1 41 2 0 32 0 8 9 66 0 12 0 9 195 9 18 167 chain 29346 chr2 243199373 + 111589833 111590142 AluYb8 318 + 0 309 87314 309 chain 42782 chr2 243199373 + 111613299 111613829 LTR12F 595 - 0 595 65678 361 0 66 24 3 1 38 1 2 103 chain 23292 chr2 243199373 + 111636359 111636646 AluSg7 307 + 5 295 114246 126 0 1 145 1 3 15 chain 7670 chr2 243199373 + 111641588 111641744 MER34 540 - 0 160 173099 43 2 1 52 38 43 21 chain 270467 chr2 243199373 + 111673887 111677146 L1PA7 6471 + 3207 6470 15165 283 1 2 91 1 3 250 0 1 318 1 5 665 1 0 36 3 1 93 1 0 372 0 6 253 0 2 26 0 3 10 8 4 81 1 0 297 24 21 291 1 0 139 2 0 10 chain 112813 chr2 243199373 + 111686663 111688174 THE1B-int 1605 + 58 1605 33437 365 28 55 125 1 2 455 0 15 59 36 39 295 11 1 136 chain 14870 chr2 243199373 + 111697260 111697477 MER30 238 + 6 237 141715 88 0 1 12 13 29 59 3 0 42 chain 125762 chr2 243199373 + 111702213 111704085 L1PA15 4387 - 21 1831 29168 10 1 0 23 12 7 10 8 6 40 6 3 50 2 1 9 4 0 22 1 0 54 1 0 26 2 1 93 2 1 77 1 0 36 8 6 15 0 1 37 13 9 16 1 0 10 0 7 146 9 4 10 10 11 88 0 1 341 1 2 23 7 1 223 43 6 77 0 2 238 0 1 66 chain 5976 chr2 243199373 + 111707714 111707777 L1PA3long 6157 + 6018 6081 185466 63 chain 4323 chr2 243199373 + 111758767 111758815 MLT1F-int 966 + 463 511 202933 48 chain 16738 chr2 243199373 + 111802983 111803200 THE1C 375 + 122 350 136287 8 0 3 67 1 4 16 0 3 72 0 2 53 chain 28510 chr2 243199373 + 111803967 111804341 THE1C 375 - 0 375 91147 26 1 0 210 0 4 18 1 0 34 6 5 78 chain 50741 chr2 243199373 + 111837488 111838089 L1PA7 6471 - 2690 3308 58318 226 1 5 302 0 1 27 1 13 44 chain 219503 chr2 243199373 + 111838089 111840771 L1PA7 6471 + 3799 6469 17916 140 0 1 64 7 6 225 1 2 718 1 0 299 2 5 362 5 0 77 1 3 194 30 18 44 0 1 362 1 2 139 2 0 8 chain 41749 chr2 243199373 + 111898783 111899255 L1PA3long 6157 + 5689 6155 66964 455 6 0 11 chain 5172 chr2 243199373 + 112009027 112009159 HAL1-2a_MD 234 + 31 231 193338 17 20 36 14 1 71 30 9 0 6 9 0 26 chain 27029 chr2 243199373 + 112152320 112152676 THE1A 353 + 0 353 96188 87 1 0 23 1 0 90 4 3 150 chain 14045 chr2 243199373 + 112225875 112226062 MLT2D 439 - 243 439 144398 49 0 6 12 0 1 28 1 3 97 chain 26281 chr2 243199373 + 112242226 112242518 AluYa5 310 + 19 310 98899 78 2 1 212 chain 3566 chr2 243199373 + 112273685 112273824 MLT1F 544 + 353 496 214200 13 2 0 9 73 75 16 0 4 26 chain 5495 chr2 243199373 + 112315244 112315312 L1MC3 1789 - 630 698 190094 68 chain 24078 chr2 243199373 + 112321034 112321378 THE1A 353 + 0 353 109883 82 1 0 27 2 1 28 0 4 18 16 16 62 0 7 108 chain 125832 chr2 243199373 + 112321378 112322938 THE1A-int 1579 + 0 1574 29149 151 0 1 472 3 0 253 4 5 291 0 1 171 5 20 197 1 0 12 chain 28450 chr2 243199373 + 112322943 112323298 THE1A 353 + 0 353 91370 81 5 4 26 1 0 242 chain 18351 chr2 243199373 + 112345572 112345824 Tigger1 2417 + 877 1138 131933 178 4 12 19 7 8 44 chain 50670 chr2 243199373 + 112345859 112346424 L1PA4 6152 - 2794 3356 58520 447 3 0 115 chain 249657 chr2 243199373 + 112346424 112349189 L1PA4 6152 + 3355 6152 16272 138 0 4 10 0 1 139 0 9 31 0 2 251 0 1 397 0 13 524 0 1 1267 0 1 8 chain 5999 chr2 243199373 + 112351591 112351783 MLT2B1 522 - 3 186 185255 29 62 72 50 33 14 18 chain 26481 chr2 243199373 + 112366912 112367386 MER66B 489 + 0 489 98117 151 4 45 11 41 0 79 1 0 47 63 80 58 1 0 18 chain 9688 chr2 243199373 + 112370031 112370148 LTR37A 408 + 270 387 162161 117 chain 12186 chr2 243199373 + 112382204 112382370 L1PA11 4918 - 424 584 151472 5 1 0 15 2 0 67 2 0 13 2 1 59 chain 4496 chr2 243199373 + 112398399 112398468 MLT1B 390 - 320 390 200825 43 8 9 18 chain 28795 chr2 243199373 + 112399485 112399797 AluYa5 310 + 0 309 89916 97 3 0 212 chain 4809 chr2 243199373 + 112407378 112407481 L1MB4 1306 + 735 839 197243 21 1 2 7 6 0 25 7 14 8 1 0 27 chain 115865 chr2 243199373 + 112429618 112431067 SVA_B 1603 + 6 1603 32510 13 0 8 15 33 5 416 114 0 246 1 0 51 0 281 106 1 0 55 0 3 398 chain 6781 chr2 243199373 + 112430096 112430209 SVA_B 1603 + 466 579 120837 113 chain 136880 chr2 243199373 + 112439244 112440830 LTR12C 1709 + 0 1709 26666 650 0 119 68 1 0 275 1 0 5 3 1 106 0 4 154 0 1 57 0 1 169 0 2 97 chain 23443 chr2 243199373 + 112443298 112444039 L1PB1 5432 - 12 420 113412 16 1 0 13 1 0 7 4 7 4 0 1 26 2 0 10 319 9 30 12 1 16 1 0 44 1 0 15 2 1 51 2 0 10 7 3 9 1 0 33 3 0 9 1 2 91 chain 6668 chr2 243199373 + 112454652 112454733 MLT2D 439 - 350 431 179924 81 chain 20536 chr2 243199373 + 112471238 112471474 L1PA5 6144 + 5897 6135 125524 97 0 1 97 0 1 42 chain 3186 chr2 243199373 + 112494484 112494520 MIR 256 - 121 157 221194 36 chain 25390 chr2 243199373 + 112502810 112503103 AluSp 311 - 7 300 102737 293 chain 5871 chr2 243199373 + 112518178 112518256 LTR2C 499 + 419 499 186463 19 1 3 58 chain 5385 chr2 243199373 + 112527580 112527648 Tigger4a 237 - 115 183 191141 68 chain 24462 chr2 243199373 + 112540808 112541166 THE1D 372 + 0 372 107749 102 1 0 58 0 1 9 40 54 148 chain 22075 chr2 243199373 + 112610962 112611296 Tigger1 2417 - 586 876 119906 33 0 8 21 3 0 3 49 0 225 chain 44745 chr2 243199373 + 112629346 112629932 L1PB3 3668 - 1584 2187 63338 414 0 7 35 1 0 36 3 11 82 3 6 12 chain 21692 chr2 243199373 + 112635083 112635366 AluY 311 + 12 288 121420 40 10 6 71 3 0 159 chain 76948 chr2 243199373 + 112642973 112643808 L1PA3long 6157 + 5311 6152 45000 292 0 6 543 chain 23988 chr2 243199373 + 112647091 112647388 AluSq10 312 + 11 297 110395 96 1 0 21 6 0 159 4 0 10 chain 38563 chr2 243199373 + 112648604 112649107 MER9a3 513 + 2 513 71352 11 0 2 134 2 0 23 6 14 72 1 0 177 0 1 77 chain 46877 chr2 243199373 + 112666774 112667425 PABL_A 660 + 0 660 61330 50 1 5 272 3 0 181 0 3 47 27 31 29 9 10 32 chain 16025 chr2 243199373 + 112667437 112667642 L1MA5A 2387 + 1828 2033 138296 205 chain 24946 chr2 243199373 + 112667843 112668145 AluSq10 312 - 9 311 105077 302 chain 92043 chr2 243199373 + 112691305 112692441 L1PA7 6471 - 7 1146 38963 149 1 0 5 1 3 18 2 1 56 12 10 522 0 2 77 1 0 18 0 4 274 chain 20931 chr2 243199373 + 112713461 112713703 L1PA5 6144 + 5900 6144 124173 230 1 3 11 chain 80954 chr2 243199373 + 112720419 112721386 LTR5_Hs 974 - 0 974 43211 103 6 4 33 5 12 217 0 1 318 0 1 285 chain 9432 chr2 243199373 + 112721853 112722137 L1MC3 1789 - 472 698 163392 7 3 0 44 140 85 90 chain 27768 chr2 243199373 + 112737985 112738293 AluYk4 311 - 2 310 93811 308 chain 34692 chr2 243199373 + 112757290 112757824 LTR7B 505 - 10 505 76634 22 0 1 128 23 0 54 7 61 28 72 1 200 chain 38704 chr2 243199373 + 112774471 112774996 LTR12 884 - 11 884 71145 88 0 236 104 2 1 67 2 0 16 0 132 23 18 2 180 1 0 24 chain 4802 chr2 243199373 + 112785509 112785638 MER58A 224 - 83 215 197340 17 41 43 30 10 11 31 chain 2916 chr2 243199373 + 112791850 112791882 U2 167 + 0 32 226740 32 chain 27723 chr2 243199373 + 112796922 112797247 LTR17 781 - 455 781 93957 141 0 1 184 chain 186310 chr2 243199373 + 112797563 112800267 HERV17-int 4347 - 0 4335 20392 242 459 0 370 0 1672 591 1 2 116 4 0 589 0 430 64 5 1 131 1 0 27 2 0 34 2 1 50 1 0 15 chain 26322 chr2 243199373 + 112797805 112798236 LTR7 482 + 0 466 98730 74 60 12 15 16 66 57 5 37 104 1 2 99 chain 38906 chr2 243199373 + 112802093 112802566 LTR17 781 - 53 526 70859 84 0 1 316 1 0 72 chain 84833 chr2 243199373 + 112806711 112807715 LTR13 1007 + 0 1007 41575 73 2 0 308 2 3 244 2 1 64 0 5 309 chain 9241 chr2 243199373 + 112810428 112810540 MER41D 557 - 440 552 164348 112 chain 185870 chr2 243199373 + 112827582 112831750 L1PREC2 3366 - 117 3220 20425 12 14 1 7 4 0 9 10 5 19 241 150 33 12 10 32 22 8 11 3 0 30 2 0 6 62 49 13 3 0 4 1 0 44 1 0 54 2 0 147 319 0 110 0 31 65 319 0 358 0 1 150 1 2 121 4 7 156 6 5 24 15 25 194 0 1 27 15 18 175 4 0 8 334 0 197 122 128 140 6 10 143 1 2 38 1 0 64 2 0 116 1 0 32 45 57 17 27 24 13 chain 26011 chr2 243199373 + 112877645 112877952 AluY 311 + 0 303 99971 123 8 4 176 chain 33351 chr2 243199373 + 112901550 112902007 MER75 514 + 38 504 78652 49 0 4 9 11 15 122 8 9 258 chain 26756 chr2 243199373 + 112915479 112915773 AluYf4 310 - 16 310 97145 294 chain 121653 chr2 243199373 + 112935894 112937607 L1PA14 3548 + 1740 3440 30497 425 3 4 29 0 1 130 0 13 88 0 1 104 2 1 141 1 0 6 9 5 232 26 23 10 2 0 37 10 8 7 2 0 109 8 4 13 9 6 13 0 1 17 0 1 163 16 12 35 4 2 12 1 0 5 7 6 10 1 0 26 chain 22063 chr2 243199373 + 112954332 112954694 THE1B 368 - 0 363 119953 40 23 22 66 45 48 23 1 0 164 chain 26767 chr2 243199373 + 112961230 112961583 THE1A 353 - 0 353 97102 219 17 15 6 0 2 17 1 0 46 0 1 47 chain 4131 chr2 243199373 + 112975794 112975849 Charlie1a 1436 - 1125 1179 205489 19 1 0 35 chain 20422 chr2 243199373 + 112980599 112980847 L1PA5 6144 + 5897 6144 125834 97 0 1 137 3 1 11 chain 11636 chr2 243199373 + 113003281 113003427 Tigger1 2417 + 915 1064 153748 124 0 3 22 chain 44622 chr2 243199373 + 113017656 113018271 MER51C 639 - 10 639 63457 8 1 0 212 7 23 175 26 20 149 3 8 34 chain 3300 chr2 243199373 + 113025266 113025360 L1ME2z 1083 + 843 935 218976 26 40 38 28 chain 25538 chr2 243199373 + 113056582 113056870 AluY 311 + 10 299 102061 122 0 1 166 chain 124610 chr2 243199373 + 113083651 113086096 L1MA3 4352 - 4 1798 29504 17 3 0 3 1 0 13 1 0 27 1 0 5 2 1 22 3 1 63 2 1 16 1 0 60 51 28 153 1 5 30 1 2 54 312 2 229 1 0 5 0 1 220 0 1 105 5 13 10 8 11 42 0 1 196 1 0 69 7 8 51 326 0 65 1 3 88 3 0 8 0 3 134 1 0 28 chain 371700 chr2 243199373 + 113104743 113109577 Harlequin-int 5206 - 575 5071 11031 731 318 5 219 6 4 835 0 16 67 0 1 491 7 6 902 0 2 59 2 1 103 3 0 8 24 0 120 3 0 54 1 0 159 0 1 364 7 0 113 5 1 74 0 1 159 chain 35189 chr2 243199373 + 113111118 113111580 LTR2 463 - 0 463 75932 88 15 16 48 1 0 248 6 7 56 chain 20612 chr2 243199373 + 113112654 113112931 AluY 311 + 8 296 125253 12 2 1 112 1 0 9 2 5 6 2 0 18 0 12 113 chain 19388 chr2 243199373 + 113125408 113125637 AluY 311 + 69 299 128976 63 0 1 166 chain 25508 chr2 243199373 + 113139458 113139820 MLT2A1 477 + 0 379 102189 65 1 0 24 0 1 52 6 7 20 0 4 160 21 33 13 chain 23248 chr2 243199373 + 113168391 113168674 AluSp 311 + 12 295 114448 8 1 0 210 0 1 64 chain 5370 chr2 243199373 + 113172608 113172670 AluSc 308 + 74 136 191305 62 chain 9006 chr2 243199373 + 113186435 113186534 L1PA2 6032 + 5931 6030 165559 99 chain 5528 chr2 243199373 + 113208385 113208480 MLT1F2 592 + 42 138 189768 54 14 15 27 chain 44312 chr2 243199373 + 113208485 113209114 MER41B 635 - 0 635 63810 53 27 26 88 17 16 308 3 10 5 0 1 128 chain 28849 chr2 243199373 + 113215311 113215677 THE1C 375 - 0 375 89672 185 0 9 181 chain 22504 chr2 243199373 + 113222646 113222946 AluSp 311 + 0 301 118012 59 0 4 69 10 7 162 chain 25187 chr2 243199373 + 113236607 113236921 AluY 311 + 12 309 103811 109 18 0 11 0 1 176 chain 565431 chr2 243199373 + 113261389 113267422 L1HS 6032 - 0 6031 188 3099 0 1 852 0 2 1976 5 0 101 chain 387565 chr2 243199373 + 113281382 113285813 L1PA5 6144 - 9 4426 10533 746 0 3 198 2 4 774 3 4 55 0 4 415 1 2 248 1 0 959 24 1 27 2 0 275 0 1 105 0 1 42 1 0 553 chain 23800 chr2 243199373 + 113294275 113294654 L1PA16 3655 - 93 453 111481 8 22 0 35 12 16 213 3 1 61 9 10 16 chain 3705 chr2 243199373 + 113296367 113296412 L1PA16 3655 + 3523 3568 211879 45 chain 6499 chr2 243199373 + 113302062 113302214 Charlie1a 1436 - 207 370 181256 12 2 0 6 25 38 25 1 0 38 14 15 29 chain 4612 chr2 243199373 + 113336940 113337045 L1MD2 1676 - 537 638 199485 17 1 4 45 29 22 13 chain 7305 chr2 243199373 + 113337062 113337161 HY3 101 - 1 101 175400 74 1 2 24 chain 24658 chr2 243199373 + 113355792 113356094 AluSp 311 + 0 307 106679 132 1 0 87 0 6 82 chain 507349 chr2 243199373 + 113365964 113372929 L1PA7 6471 - 1 6466 6377 630 0 3 28 321 0 109 0 2 77 2 1 408 8 8 823 0 1 101 0 1 220 0 1 47 0 3 549 0 3 565 0 4 253 0 12 123 0 1 32 312 0 68 0 4 34 5 6 188 0 1 134 0 1 132 0 3 157 0 4 358 0 1 104 0 19 34 0 4 135 1 0 4 5 6 122 0 1 69 5 72 7 0 1 49 1 6 164 3 0 103 1 0 71 13 0 120 82 90 188 chain 5298 chr2 243199373 + 113428218 113428294 MADE1 96 - 4 96 192033 33 4 20 39 chain 23813 chr2 243199373 + 113434922 113435227 AluSp 311 + 0 301 111401 128 4 0 173 chain 5422 chr2 243199373 + 113440227 113440319 LTR15 485 - 23 111 190785 5 0 1 17 4 0 37 7 6 22 chain 8839 chr2 243199373 + 113453814 113454002 L1MB3 1562 + 1388 1552 166434 32 48 24 23 1 2 55 1 0 28 chain 84509 chr2 243199373 + 113473927 113474850 L1PA4 6152 - 1 926 41711 4 0 1 107 0 1 812 chain 3129 chr2 243199373 + 113484902 113484935 MIRc 230 - 100 133 222364 33 chain 3090 chr2 243199373 + 113545410 113545452 MIRb 242 - 56 98 223091 42 chain 23331 chr2 243199373 + 113559882 113560173 AluSp 311 + 0 297 114019 53 1 7 237 chain 29526 chr2 243199373 + 113581183 113581491 AluYb8 318 - 10 318 86545 308 chain 11779 chr2 243199373 + 113585583 113585760 MSTA 426 - 236 419 153134 20 21 27 136 chain 34476 chr2 243199373 + 113606688 113607134 MER4A1 472 + 5 472 76949 242 18 39 186 chain 34580 chr2 243199373 + 113607460 113607896 LTR2 463 + 0 463 76780 61 0 3 66 0 4 28 7 27 274 chain 16088 chr2 243199373 + 113614408 113614623 LTR8 732 - 463 693 138092 24 2 18 61 1 0 127 chain 178035 chr2 243199373 + 113615080 113617505 L1PA7 6471 + 4318 6469 21159 217 0 1 38 1 0 4 0 1 308 0 1 70 0 35 218 3 2 118 320 2 113 0 2 175 0 5 70 0 2 389 0 1 368 2 0 11 chain 202468 chr2 243199373 + 113617980 113620655 MER4-int 2692 + 1 2692 19026 10 1 0 25 2 0 80 4 0 8 2 1 73 0 1 23 0 3 125 0 3 97 18 12 27 1 2 91 0 1 142 11 2 52 3 18 115 10 0 285 0 3 224 2 1 10 0 3 116 5 15 41 0 4 95 0 1 126 0 2 75 1 0 93 15 16 74 0 2 32 0 2 6 1 0 150 2 1 180 0 1 222 chain 31144 chr2 243199373 + 113620663 113621118 MER4A1 472 + 0 472 82266 171 0 1 75 18 39 99 27 22 65 chain 29777 chr2 243199373 + 113646581 113646901 AluYb8 318 - 0 318 85555 192 2 0 126 chain 5383 chr2 243199373 + 113655869 113655930 Charlie1b 519 + 451 512 191166 61 chain 59776 chr2 243199373 + 113656512 113657198 L1PA5 6144 - 12 698 52943 686 chain 5398 chr2 243199373 + 113659030 113659096 MER4A1 472 - 406 472 191007 66 chain 54711 chr2 243199373 + 113659133 113659784 PABL_A 660 + 0 660 55891 82 1 10 568 chain 18702 chr2 243199373 + 113665369 113665590 L1PA2 6032 - 0 217 130938 7 2 0 6 2 0 204 chain 30961 chr2 243199373 + 113666057 113666499 LTR12F 595 - 23 595 82584 158 9 14 25 1 0 4 1 4 128 25 148 91 chain 79657 chr2 243199373 + 113691830 113692798 LTR5_Hs 974 + 0 974 43751 121 3 1 119 0 1 46 0 1 315 0 1 217 16 23 26 2 0 103 chain 11808 chr2 243199373 + 113692933 113693087 L1PA8A 6298 + 6136 6291 152994 53 1 2 100 chain 5030 chr2 243199373 + 113707232 113707307 MER6 865 + 199 278 194824 32 7 11 36 chain 5278 chr2 243199373 + 113720978 113721059 MER5A1 166 - 53 164 192231 48 9 39 24 chain 26831 chr2 243199373 + 113725872 113726169 AluY 311 + 4 302 96867 128 0 1 169 chain 28986 chr2 243199373 + 113746451 113746869 L1PA8 5853 + 5422 5853 89054 98 0 1 43 1 0 44 2 0 65 7 6 14 1 0 43 2 5 22 1 0 33 1 7 15 2 11 24 chain 36640 chr2 243199373 + 113761440 113761956 HSMAR2 1300 - 776 1296 74042 10 1 0 101 0 1 46 26 29 23 0 1 251 2 3 20 1 0 35 chain 36939 chr2 243199373 + 113766399 113766817 L1PA4 6152 - 1 419 73602 418 chain 18075 chr2 243199373 + 113766818 113767023 L1PA4 6152 + 5572 5777 132662 205 chain 7322 chr2 243199373 + 113844381 113844468 U6 107 + 0 87 175288 87 chain 205968 chr2 243199373 + 113852179 113855752 L1PB1 5432 - 28 2973 18793 13 1 0 18 1 0 26 3 1 14 1 0 4 4 2 18 17 6 6 3 0 16 1 0 44 18 120 10 0 3 297 0 9 65 0 4 99 1 0 247 19 13 286 704 0 140 0 1 37 0 2 45 0 1 102 1 0 28 8 0 453 1 0 223 4 5 38 0 1 20 0 1 156 0 12 7 28 0 165 19 23 37 0 2 64 0 1 27 1 0 33 chain 60295 chr2 243199373 + 113853456 113854114 SVA_D 2077 - 18 676 52684 658 chain 24684 chr2 243199373 + 113860112 113860536 LTR7 482 - 6 482 106524 85 0 1 23 1 2 60 7 40 37 6 17 28 44 0 19 13 63 101 chain 2721 chr2 243199373 + 113865439 113865474 L1MA3 4352 - 93 127 229868 29 1 0 5 chain 17025 chr2 243199373 + 113865838 113866031 L1PA4 6152 - 0 194 135523 150 0 1 43 chain 6151 chr2 243199373 + 113878746 113878814 MER41A 554 - 87 155 183975 68 chain 28183 chr2 243199373 + 113897653 113898220 L1PB1 5432 - 21 518 92368 5 0 2 12 3 1 21 1 0 24 2 0 14 1 0 4 3 1 19 9 0 12 3 0 15 1 0 44 1 0 16 2 1 53 2 0 9 20 15 9 1 0 19 67 12 50 10 10 64 0 14 51 chain 21567 chr2 243199373 + 113898467 113898756 AluSp 311 + 4 299 121891 185 0 3 55 4 5 24 3 5 18 chain 58962 chr2 243199373 + 113903360 113904276 L1MA2 4263 - 3128 4042 53419 121 1 3 31 0 3 194 0 3 68 58 59 74 12 10 83 9 3 137 0 1 4 1 0 11 1 0 49 1 0 5 21 20 35 chain 53274 chr2 243199373 + 113904373 113905648 L1M1 2793 - 634 1622 56844 27 23 26 48 1 2 66 402 106 14 8 0 137 0 4 56 1 0 115 41 48 113 0 1 112 33 32 30 1 5 38 1 0 8 chain 23543 chr2 243199373 + 113908178 113908445 AluSp 311 - 14 281 112892 267 chain 5136 chr2 243199373 + 113917624 113917704 MADE1 96 + 0 96 193719 23 10 26 47 chain 24128 chr2 243199373 + 113929806 113930099 AluSp 311 + 1 295 109593 29 1 2 263 chain 19125 chr2 243199373 + 113937001 113937306 MER41B 635 - 7 633 129761 62 22 27 58 0 1 14 9 323 12 4 5 124 chain 85343 chr2 243199373 + 113946526 113947950 L1PB1 5432 - 28 1262 41401 13 1 0 21 1 0 26 2 0 12 1 0 4 3 1 16 28 15 15 1 0 44 1 0 16 2 1 51 2 0 10 9 5 7 1 0 13 1 0 16 4 1 12 102 2 82 15 9 171 24 27 186 3 0 199 0 1 200 55 4 54 chain 3448 chr2 243199373 + 113957272 113957312 MIRb 242 - 104 144 216232 40 chain 25608 chr2 243199373 + 113989308 113989592 AluSp 311 - 15 299 101684 284 chain 17635 chr2 243199373 + 114052997 114053341 L1PB1 5432 - 10 323 133895 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 24 28 16 55 1 0 16 2 1 50 19 13 13 1 0 6 1 0 24 3 0 5 chain 124064 chr2 243199373 + 114130838 114132403 THE1A-int 1579 - 5 1579 29679 12 1 0 36 1 0 747 20 19 94 4 3 245 12 13 130 0 9 150 0 3 113 chain 24428 chr2 243199373 + 114132408 114132765 THE1A 353 - 5 353 107930 44 13 5 41 22 21 75 0 1 51 1 0 110 chain 164951 chr2 243199373 + 114149081 114150893 L1PA3long 6157 - 1 1813 22661 765 0 1 14 1 0 1032 chain 129546 chr2 243199373 + 114151421 114153601 SVA_F 1814 + 335 1814 28192 429 0 40 51 275 0 25 0 1 11 1 0 56 3 18 40 303 0 132 178 0 676 chain 16720 chr2 243199373 + 114151951 114152171 SVA_F 1814 + 855 1091 77019 31 0 2 4 1 0 56 3 18 125 chain 6992 chr2 243199373 + 114152312 114152404 SVA_F 1814 + 1182 1274 77019 92 chain 2251 chr2 243199373 + 114152404 114152433 SVA_F 1814 + 857 886 162852 29 chain 14684 chr2 243199373 + 114152433 114152598 SVA_F 1814 + 1128 1291 142312 49 1 0 97 1 0 17 chain 2772 chr2 243199373 + 114152747 114152796 SVA_F 1814 + 898 947 123556 49 chain 960 chr2 243199373 + 114152796 114152822 SVA_F 1814 + 1011 1037 146810 26 chain 9200 chr2 243199373 + 114152822 114152925 SVA_F 1814 + 988 1089 154208 13 1 0 10 1 0 78 chain 71340 chr2 243199373 + 114158822 114159623 L1PA5 6144 - 1375 2176 47686 801 chain 119510 chr2 243199373 + 114159623 114160978 L1PA5 6144 + 4779 6138 31212 298 5 7 807 0 1 102 3 4 140 chain 20286 chr2 243199373 + 114173394 114173695 THE1C 375 + 7 325 126266 16 0 1 40 10 19 31 8 6 158 1 10 37 chain 21774 chr2 243199373 + 114183734 114184065 THE1B 368 + 0 356 121118 44 5 20 10 0 1 97 4 3 23 32 42 116 chain 21292 chr2 243199373 + 114185641 114185964 THE1B 368 + 0 368 122897 40 1 16 112 1 0 30 35 45 81 5 26 18 chain 29478 chr2 243199373 + 114197451 114197760 AluYa5 310 - 1 310 86724 309 chain 11486 chr2 243199373 + 114202993 114203139 MER2 342 - 47 193 154348 146 chain 4705 chr2 243199373 + 114204657 114204718 Tigger1 2417 - 54 115 198469 61 chain 544864 chr2 243199373 + 114229062 114235116 L1PA3long 6157 - 1 6153 2091 500 1 0 356 1 0 2117 1 0 2083 27 0 78 1 0 113 0 128 618 10 11 148 chain 10013 chr2 243199373 + 114244725 114244877 Tigger3c 601 + 373 520 160523 24 17 16 13 4 0 94 chain 334965 chr2 243199373 + 114245703 114250198 L1PB1 5432 + 62 5419 12027 78 1 0 266 1 0 94 0 7 27 15 11 383 0 2 100 0 9 193 0 1 16 0 8 35 0 1 111 13 1 140 0 4 226 1 3 253 0 1 56 1 0 89 10 16 53 1 0 6 7 8 32 0 2 78 0 8 47 0 11 13 16 25 13 8 0 93 0 3 78 0 1 108 0 4 65 2 1 193 1 4 84 0 1 41 2 832 68 1 0 354 0 6 129 8 7 64 4 7 180 1 0 291 1 2 10 7 0 23 1 0 8 1 0 11 5 1 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 4965 chr2 243199373 + 114274304 114274365 MER20 218 + 5 67 195531 37 0 1 24 chain 6137 chr2 243199373 + 114329032 114329107 L1PA8 5853 + 5761 5836 184104 75 chain 5065 chr2 243199373 + 114336933 114336994 L1P1 4361 - 1338 1399 194480 61 chain 42581 chr2 243199373 + 114337000 114337508 L1PA6 6164 + 5652 6162 65924 494 0 1 5 0 1 9 chain 27569 chr2 243199373 + 114362662 114362966 AluYb8 318 - 9 314 94436 170 1 2 133 chain 3712 chr2 243199373 + 114365731 114365774 MER72 723 + 680 723 211757 43 chain 530227 chr2 243199373 + 114413728 114420777 L1PA4 6152 + 0 6151 4163 97 1 7 153 0 1 322 1 0 156 2 0 34 0 128 245 0 2 91 1 0 605 1038 0 553 2 1 106 0 1 1007 0 1 636 0 1 1153 0 5 846 chain 7624 chr2 243199373 + 114438688 114438781 U6 107 + 1 94 173383 93 chain 199937 chr2 243199373 + 114439754 114442035 L1PA5 6144 + 3846 6139 19219 264 0 9 1175 0 5 741 2 0 99 chain 29384 chr2 243199373 + 114448446 114448818 THE1C 375 + 0 375 87147 180 0 1 71 0 1 41 0 2 54 1 0 25 chain 40409 chr2 243199373 + 114455805 114456341 L1PA8 5853 + 5298 5841 68722 51 0 11 176 0 1 25 1 0 48 4 3 66 1 0 61 2 1 15 6 5 80 chain 82247 chr2 243199373 + 114461445 114462546 LTR12C 1709 - 0 1709 42658 84 8 7 28 0 10 16 0 101 22 0 1 120 25 24 58 0 1 9 11 4 4 0 1 36 0 485 187 0 16 26 1 4 4 1 0 461 chain 24270 chr2 243199373 + 114484549 114484911 THE1D 372 + 3 372 108849 60 0 1 57 7 11 30 0 1 23 37 38 148 chain 2993 chr2 243199373 + 114509839 114509909 L1MC5 759 + 349 420 225148 20 24 25 26 chain 24200 chr2 243199373 + 114519955 114520277 MER4D1 891 - 562 891 109217 294 7 14 21 chain 64584 chr2 243199373 + 114544340 114545068 L1PA5 6144 - 12 739 50759 136 1 0 591 chain 20981 chr2 243199373 + 114584724 114584984 L1PA7 6471 + 6208 6470 123984 135 0 4 116 2 0 7 chain 28007 chr2 243199373 + 114696606 114696898 AluYg6 310 - 18 310 92978 292 chain 20806 chr2 243199373 + 114702085 114702346 AluY 311 + 42 290 124576 81 16 3 164 chain 4339 chr2 243199373 + 114739239 114739326 MER53 195 + 0 94 202726 32 8 12 19 6 9 22 chain 4178 chr2 243199373 + 114747591 114747671 MADE1 96 - 0 96 204849 23 20 36 37 chain 23346 chr2 243199373 + 114753249 114753517 L1PA5 6144 - 6 274 113947 268 chain 41397 chr2 243199373 + 114763293 114763977 L1PB1 5432 + 4750 5404 67417 260 7 6 87 1 2 10 7 0 23 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 20 15 24 12 20 5 28 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 chain 12196 chr2 243199373 + 114765394 114765567 Tigger3a 397 + 143 312 151438 9 0 1 4 1 0 123 5 1 31 chain 547901 chr2 243199373 + 114770554 114776697 L1PA3long 6157 - 0 6151 1719 1131 0 1 667 0 4 182 0 1 904 1 0 4 5 4 196 1 2 119 1 2 2066 1 0 297 0 4 20 1 0 547 chain 27361 chr2 243199373 + 114780770 114781150 L1PA8 5853 - 0 370 95073 93 1 0 18 1 0 37 6 7 10 1 0 6 1 0 74 3 1 43 1 0 66 4 0 15 chain 9671 chr2 243199373 + 114784807 114784921 MER58D 378 + 245 359 162240 114 chain 48366 chr2 243199373 + 114791224 114791871 PABL_A 660 + 0 660 60205 204 1 2 24 1 0 71 6 23 14 1 2 76 3 0 16 0 1 145 3 0 82 chain 136457 chr2 243199373 + 114792883 114795218 L1PB1 5432 - 10 2003 26752 13 6 5 12 1 0 22 1 0 38 11 8 16 24 12 16 1 0 44 1 0 15 2 1 52 2 0 7 24 19 4 1 0 24 3 0 11 3 0 172 287 0 118 11 9 178 12 37 9 14 0 24 14 1 5 1 0 15 10 1 23 9 13 25 0 5 22 17 1 453 2 0 28 0 2 168 1 0 19 24 25 21 3 0 243 0 4 53 chain 3045 chr2 243199373 + 114806413 114806449 MIR 256 - 132 168 224103 36 chain 100049 chr2 243199373 + 114816110 114817227 L1PA4 6152 + 5034 6151 36762 1117 chain 7397 chr2 243199373 + 114833618 114833710 MLT1C 463 + 32 124 174787 92 chain 551596 chr2 243199373 + 114853875 114859982 L1PA3long 6157 - 0 6109 1240 71 0 1 982 0 1 1157 0 1 581 1 0 96 1 0 4 0 1 3214 chain 62076 chr2 243199373 + 114889380 114890160 L1PA8 5853 + 5055 5847 51862 353 0 18 136 1 0 48 2 0 72 26 25 33 2 1 19 1 0 87 chain 35653 chr2 243199373 + 114894615 114895017 L1P1 4361 - 33 433 75332 23 1 0 155 1 0 222 chain 13964 chr2 243199373 + 114921758 114922223 MLT2B2 565 + 18 565 144694 74 1 0 13 4 0 26 80 90 38 10 161 9 73 0 46 33 43 8 10 0 15 7 6 18 chain 3680 chr2 243199373 + 114935908 114935948 MER5A1 166 - 47 87 212244 40 chain 9560 chr2 243199373 + 114947511 114947636 L1PA5 6144 + 6023 6142 162777 78 2 0 34 4 0 7 chain 6104 chr2 243199373 + 114954853 114955109 L1ME1 1623 - 139 413 184383 32 167 184 48 0 1 9 chain 23278 chr2 243199373 + 114963907 114964185 AluSg7 307 - 28 307 114308 147 0 1 131 chain 16599 chr2 243199373 + 114967989 114968310 MER1B 344 - 34 343 136674 35 2 0 5 1 7 158 63 47 17 6 0 8 10 16 16 chain 14914 chr2 243199373 + 114985385 114985732 L1PB1 5432 - 2 316 141591 4 1 0 4 1 0 4 1 0 14 1 0 10 2 1 23 4 3 21 2 0 16 7 4 18 19 8 4 1 0 16 2 1 13 0 1 29 1 0 15 2 1 47 7 5 9 5 1 14 1 0 6 1 0 22 chain 47995 chr2 243199373 + 114986389 114987258 L1PA11 4918 - 289 1096 60494 18 136 103 20 2 1 13 2 0 11 8 3 53 2 0 13 2 1 4 1 0 61 33 0 15 5 15 318 6 5 22 0 7 124 chain 48249 chr2 243199373 + 114989633 114990386 L1PBa 3878 - 101 850 60273 5 1 0 11 22 16 8 2 0 21 2 1 84 3 4 198 29 32 170 1 0 5 3 0 55 0 1 4 5 4 97 0 4 7 1 3 19 chain 26952 chr2 243199373 + 114990466 114990774 AluYg6 310 - 9 310 96446 170 7 0 131 chain 258699 chr2 243199373 + 115044356 115047325 L1PA4 6152 + 3177 6152 15767 510 0 4 1800 1 0 69 0 2 244 0 1 91 1 0 91 16 11 130 0 1 10 0 5 6 chain 354188 chr2 243199373 + 115057760 115062323 L1PA7 6471 - 1 6455 11502 37 9 0 134 10 1 268 0 2 6 48 35 221 0 1905 21 3 4 438 5 4 61 1 0 281 1 0 137 0 1 8 0 4 270 20 8 230 0 1 134 0 4 466 0 1 518 0 19 285 0 1 334 17 18 50 22 15 53 0 3 32 0 1 52 1 0 119 42 41 49 0 1 176 0 1 4 chain 302545 chr2 243199373 + 115070524 115074586 HERVL-int 5654 + 1525 5609 13297 36 4 5 37 4 8 105 1 0 4 0 1 92 8 7 21 45 46 18 0 2 391 10 21 405 14 17 65 15 14 200 6 7 328 0 3 66 1 0 4 0 1 670 5 7 20 17 14 574 27 26 689 4 0 23 0 1 124 0 3 29 chain 219259 chr2 243199373 + 115090686 115093165 L1PA4 6152 - 0 2481 17931 1260 6 0 534 0 8 679 chain 103543 chr2 243199373 + 115093168 115094368 L1PA4 6152 + 2498 3686 35853 749 0 4 35 0 1 200 10 0 3 7 0 196 chain 2590 chr2 243199373 + 115110151 115110210 MIRb 242 + 39 99 231814 18 16 17 25 chain 280803 chr2 243199373 + 115113337 115116472 L1PA4 6152 - 9 3159 14596 245 1 0 417 0 13 1113 0 4 662 1 0 696 chain 3022 chr2 243199373 + 115117057 115117172 MER5B 177 - 29 142 224585 16 1 0 23 59 58 16 chain 12398 chr2 243199373 + 115123281 115123450 L1PA8 5853 + 5693 5853 150646 7 7 0 40 2 1 19 1 0 93 chain 171212 chr2 243199373 + 115151083 115153083 L1PA6 6164 + 4154 6156 21911 884 0 1 273 0 4 115 4 0 400 0 1 324 chain 41436 chr2 243199373 + 115164760 115165251 L1PA5 6144 - 0 496 67369 421 0 2 22 14 17 34 chain 464757 chr2 243199373 + 115165868 115171713 L1PA6 6164 - 162 6164 8229 71 167 14 91 1 0 233 11 289 10 1 7 1382 0 13 702 0 1 39 0 5 438 0 1 266 0 3 107 4 0 189 0 6 1326 5 2 9 0 12 53 0 1 165 1 0 117 10 1 26 24 26 397 chain 14271 chr2 243199373 + 115165939 115166101 L1PA6 6164 - 1740 1902 143053 162 chain 4527 chr2 243199373 + 115177705 115177758 U2 167 + 0 53 200478 53 chain 120310 chr2 243199373 + 115237088 115238445 L1PA4 6152 + 4786 6152 30936 211 0 1 306 0 4 42 0 5 463 2 1 333 chain 27645 chr2 243199373 + 115279551 115279860 AluYa5 310 - 9 310 94224 6 3 0 163 5 0 132 chain 20782 chr2 243199373 + 115280259 115280596 THE1B 368 - 19 366 124672 20 0 2 27 2 0 108 2 0 23 1 0 84 28 43 16 12 10 14 chain 18330 chr2 243199373 + 115285253 115285522 Tigger3a 397 - 31 353 131989 188 3 7 29 19 68 30 chain 22836 chr2 243199373 + 115341973 115342238 L1PA4 6152 - 0 266 116415 261 0 1 4 chain 31047 chr2 243199373 + 115351559 115351940 MLT2A1 477 + 0 385 82441 137 0 1 29 2 6 149 2 1 62 chain 56596 chr2 243199373 + 115370997 115371711 L1PA8 5853 + 5149 5853 54785 169 0 2 59 5 0 185 1 0 46 2 0 69 1 0 22 2 1 38 2 1 19 1 0 93 chain 8005 chr2 243199373 + 115405834 115405945 LTR40b 463 + 350 463 171022 49 1 3 61 chain 71430 chr2 243199373 + 115427467 115428267 L1PA3long 6157 + 5367 6157 47728 388 11 1 401 chain 8261 chr2 243199373 + 115429027 115429156 MSTB1 431 + 301 427 169621 20 16 13 93 chain 315384 chr2 243199373 + 115447173 115451431 L1PA11 4918 - 289 4512 12790 18 47 33 11 2 0 13 1 0 15 42 28 23 2 1 11 3 6 63 4 0 13 2 1 52 2 0 13 5 0 73 0 1 481 4 1 46 0 1 34 0 1 23 0 1 201 0 1 12 0 15 279 0 3 48 6 5 6 0 1 441 28 13 135 0 1 5 3 0 167 4 3 184 4 5 327 4 1 66 0 4 266 1 0 75 0 1 44 5 7 305 4 3 6 0 1 629 chain 6599 chr2 243199373 + 115477675 115477768 LTR48B 642 - 481 575 180466 67 4 5 22 chain 59726 chr2 243199373 + 115491510 115492265 MER4E 760 + 0 752 52979 26 0 1 138 7 0 98 0 6 92 4 0 62 0 1 328 chain 53142 chr2 243199373 + 115497508 115498094 L1PA3long 6157 + 5571 6157 56931 572 1 0 6 0 1 7 chain 83386 chr2 243199373 + 115505982 115506881 L1PA2 6032 - 3 902 42163 899 chain 40300 chr2 243199373 + 115548048 115548500 LTR7 482 - 0 482 68880 187 0 31 16 1 0 248 chain 28859 chr2 243199373 + 115550728 115551072 L1PA7 6471 - 6 347 89619 6 3 0 335 chain 123523 chr2 243199373 + 115560914 115562482 THE1A-int 1579 + 0 1573 29871 70 1 0 358 0 1 50 1 0 286 11 2 272 4 0 15 0 6 41 0 1 50 0 10 181 12 13 22 7 8 187 chain 27187 chr2 243199373 + 115562487 115562841 THE1A 353 + 0 353 95639 111 1 0 98 1 4 5 3 0 135 chain 78619 chr2 243199373 + 115593877 115594937 MER11B 1079 - 19 1079 44216 183 0 1 34 1 0 72 8 2 102 1 0 71 32 35 13 5 6 112 0 1 111 1 5 53 3 0 7 0 1 251 chain 3495 chr2 243199373 + 115615250 115615290 MADE1 96 + 51 91 215433 40 chain 13435 chr2 243199373 + 115642163 115642439 L1PB1 5432 - 16 264 146555 12 1 0 13 1 0 21 1 0 17 38 33 9 9 0 15 12 4 11 1 0 45 1 0 17 1 0 51 chain 134679 chr2 243199373 + 115653453 115654947 L1PA3long 6157 - 1142 2635 27079 514 1 0 979 chain 102835 chr2 243199373 + 115654947 115656085 L1PA3long 6157 + 5018 6157 35984 6 0 1 1132 chain 56604 chr2 243199373 + 115686504 115687576 MER11B 1079 - 0 1072 54780 28 1 0 166 0 1 15 70 72 19 6 8 16 153 142 51 6 7 30 24 27 30 8 7 24 13 12 65 4 5 20 0 4 323 chain 15253 chr2 243199373 + 115693587 115693919 L1PB1 5432 - 9 311 140621 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 16 6 6 1 0 16 1 0 8 0 1 37 17 14 52 2 0 7 6 3 14 3 2 4 1 0 17 chain 6401 chr2 243199373 + 115695308 115695382 5S 121 + 18 92 182013 74 chain 41228 chr2 243199373 + 115700481 115701290 L1PA7 6471 - 4 509 67611 363 304 0 142 chain 31434 chr2 243199373 + 115712583 115713065 MER41A 554 - 0 554 81759 11 1 0 4 5 6 44 0 39 94 0 1 25 0 1 39 13 35 38 12 22 72 2 0 79 8 9 35 chain 34647 chr2 243199373 + 115715560 115715991 MER57A1 433 - 0 432 76695 297 0 1 134 chain 464645 chr2 243199373 + 115761933 115767160 L1PA3long 6157 + 0 6152 8232 152 0 1 211 0 1 403 8 136 112 0 1 1900 0 795 276 7 5 1990 5 7 17 5 4 141 chain 11988 chr2 243199373 + 115767211 115767361 L1PA7 6471 + 6318 6465 152253 141 3 0 6 chain 2462 chr2 243199373 + 115774301 115774332 L1PA3long 6157 + 5368 5399 233564 31 chain 41889 chr2 243199373 + 115774332 115774794 L1PA3long 6157 + 5695 6157 66774 462 chain 63592 chr2 243199373 + 115774823 115775588 L1PA5 6144 + 5377 6142 51118 434 2 1 159 1 2 169 chain 67813 chr2 243199373 + 115775588 115776440 L1PA7 6471 + 5614 6461 49316 5 3 0 81 0 2 340 0 2 92 0 1 8 8 2 160 1 2 7 3 1 144 chain 9002 chr2 243199373 + 115798732 115798846 MSTA 426 + 310 426 165578 5 0 2 109 chain 30419 chr2 243199373 + 115801499 115802763 L1MA3 4352 - 20 680 83652 4 1 0 14 1 0 26 1 0 6 1 0 23 29 23 14 6 7 32 6 9 7 3 0 16 689 89 60 28 30 72 5 6 21 1 2 88 4 5 106 chain 53888 chr2 243199373 + 115843436 115844527 MER4E1 777 + 0 777 56437 10 2 1 12 0 2 73 0 8 94 43 44 6 1 0 296 18 9 23 317 0 95 0 3 101 chain 21449 chr2 243199373 + 115902166 115902407 L1PA3long 6157 + 5921 6157 122338 229 5 0 7 chain 4524 chr2 243199373 + 115907380 115907435 MER53 195 + 108 163 200499 55 chain 13927 chr2 243199373 + 115929814 115929974 AluY 311 + 137 297 144829 160 chain 28270 chr2 243199373 + 115944601 115944911 AluYb8 318 - 0 318 92044 52 0 8 258 chain 37238 chr2 243199373 + 115946648 115947161 LTR10A 586 - 26 586 73186 41 1 2 84 0 17 72 1 0 68 0 39 11 25 15 98 1 2 111 chain 47829 chr2 243199373 + 115950149 115950807 HERVIP10FH-int 2884 - 2083 2735 60605 288 57 56 45 9 4 195 1 0 24 0 1 39 chain 74561 chr2 243199373 + 115967593 115968462 L1PA5 6144 - 0 870 46230 10 5 0 448 0 2 389 0 4 17 chain 2929 chr2 243199373 + 115979108 115979139 MER58C 217 + 160 191 226539 31 chain 83584 chr2 243199373 + 115997189 115998203 L1PA7 6471 - 10 995 42081 840 1 0 51 28 0 94 chain 18089 chr2 243199373 + 115999610 116000000 L1PB1 5432 - 20 369 132621 8 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 15 1 0 32 13 12 16 2 1 53 2 0 8 5 1 12 1 0 4 8 0 27 5 0 7 2 5 40 chain 25566 chr2 243199373 + 116013625 116013968 THE1C 375 - 11 354 101895 15 1 0 264 20 21 43 chain 393867 chr2 243199373 + 116087032 116091498 L1PA5 6144 - 18 4501 10328 449 1 0 374 0 4 481 0 9 464 0 4 666 1 0 995 0 1 23 0 1 1012 chain 21744 chr2 243199373 + 116091499 116091757 L1PA5 6144 + 1409 1666 121227 18 1 0 239 chain 40837 chr2 243199373 + 116105069 116105566 L1PA7 6471 - 10 526 68120 482 3 22 12 chain 173315 chr2 243199373 + 116112183 116114331 L1PA8A 6298 - 13 2159 21673 568 15 5 202 0 1 18 0 3 172 1 2 614 0 1 250 0 1 95 0 1 213 chain 537324 chr2 243199373 + 116134130 116140149 L1PA3long 6157 - 1 6147 3272 1867 0 1 327 0 1 1269 0 1 1786 0 128 284 5 0 339 0 1 142 chain 21191 chr2 243199373 + 116140727 116141069 THE1B 368 + 0 366 123237 43 6 21 107 1 0 27 41 51 117 chain 2913 chr2 243199373 + 116145219 116145253 MER53 195 + 135 169 226813 34 chain 18052 chr2 243199373 + 116186251 116186524 LTR10C 591 - 0 591 132726 15 1 0 5 1 2 183 15 335 17 2 0 34 chain 55947 chr2 243199373 + 116198060 116198709 LTR6A 649 - 0 649 55155 217 1 0 134 0 1 297 chain 130103 chr2 243199373 + 116212949 116214552 L1PA7 6471 + 4866 6467 28067 733 0 4 11 0 3 61 1 0 4 10 11 579 9 8 65 9 1 121 chain 168009 chr2 243199373 + 116244655 116246469 L1HS 6032 + 4218 6032 22283 1814 chain 31273 chr2 243199373 + 116248916 116249396 LTR19A 502 - 16 502 82036 25 0 1 42 16 18 87 20 22 46 9 8 40 1 2 127 4 5 63 chain 13789 chr2 243199373 + 116285780 116285939 L1PA5 6144 + 5978 6138 145306 16 0 1 143 chain 175366 chr2 243199373 + 116291688 116293619 L1PA3long 6157 - 0 1930 21412 677 1 0 1253 chain 13071 chr2 243199373 + 116313861 116314027 MER30 238 + 36 209 147947 73 6 0 18 0 13 69 chain 155399 chr2 243199373 + 116347761 116349549 L1PA5 6144 - 16 1812 23938 830 1 5 7 0 8 310 0 2 560 8 2 72 chain 13036 chr2 243199373 + 116375125 116375373 Tigger3a 397 + 142 397 148099 57 36 40 87 28 31 40 chain 84187 chr2 243199373 + 116390228 116391167 L1PA5 6144 + 5205 6144 41831 939 chain 25799 chr2 243199373 + 116401746 116402030 L1PA5 6144 - 6 290 100875 284 chain 20559 chr2 243199373 + 116472327 116472625 AluSg4 309 + 4 301 125441 121 2 0 68 27 28 80 chain 7610 chr2 243199373 + 116474868 116474957 L1PA4 6152 + 6050 6143 173470 43 0 4 46 chain 30483 chr2 243199373 + 116533741 116534121 L1PA7 6471 - 13 430 83464 142 17 55 130 1 0 90 chain 29557 chr2 243199373 + 116547647 116547954 AluYb8 318 - 11 318 86392 307 chain 544772 chr2 243199373 + 116557008 116563149 L1PA4 6152 - 0 6146 2100 7 3 0 1327 0 1 658 0 1 4 5 4 57 5 7 96 0 1 736 0 3 1341 0 1 1902 chain 25059 chr2 243199373 + 116567461 116567752 AluY 311 + 4 297 104509 128 0 1 66 0 1 97 chain 26284 chr2 243199373 + 116570539 116570813 AluYb8 318 - 1 275 98887 274 chain 33118 chr2 243199373 + 116578055 116578652 L1PB1 5432 - 33 564 79031 7 1 0 22 1 0 22 68 52 16 1 0 43 1 0 16 2 1 52 2 0 9 5 1 11 2 1 8 1 0 24 47 11 52 1 0 183 chain 30505 chr2 243199373 + 116581913 116582328 L1PA8 5853 - 20 428 83416 73 1 0 19 2 1 52 2 1 6 1 0 73 2 0 44 1 0 74 2 0 5 0 2 58 chain 10305 chr2 243199373 + 116634999 116635133 L1PA8 5853 + 5715 5847 159111 25 2 1 19 1 0 87 chain 494463 chr2 243199373 + 116646637 116653117 L1PA7 6471 - 19 6470 7142 148 19 21 375 0 1 16 70 13 7 0 1 45 0 2 123 0 2 77 1 0 23 0 1 103 0 10 139 1 0 35 0 2 74 0 1 34 0 4 32 18 16 124 14 4 10 1 0 4 0 1 5 30 22 27 0 1 374 0 1 137 2 0 136 1 0 4 0 1 50 0 1 146 1 2 510 0 2 99 6 14 52 1 3 22 3 1 58 1 0 234 1 5 110 0 1 93 0 4 180 0 6 54 14 8 17 0 1 212 0 1 444 11 12 367 27 0 17 0 11 262 31 29 351 0 3 230 0 1 209 1 2 6 1 0 62 1 2 112 0 1 24 6 20 240 1 0 4 chain 24482 chr2 243199373 + 116656130 116656433 AluSp 311 + 3 300 107641 265 7 1 31 chain 33452 chr2 243199373 + 116672511 116672999 MER9a3 513 + 1 513 78484 17 0 2 90 0 1 68 13 14 19 12 22 22 1 0 38 1 11 125 6 7 76 chain 3842 chr2 243199373 + 116678505 116678653 MER49 923 - 725 874 209755 16 86 87 46 chain 44981 chr2 243199373 + 116681185 116684188 L1PB1 5432 - 9 2066 63079 19 1 0 13 1 0 21 1 0 24 2 0 13 2 1 9 3 1 14 27 16 9 2 1 45 19 17 36 1 0 16 2 0 9 5 1 14 2 1 29 11 0 7 2125 1237 46 0 4 56 9 22 6 0 3 130 6 5 14 0 1 4 1 0 157 37 1 31 0 1 4 1 0 19 chain 91794 chr2 243199373 + 116693373 116694395 L1PA4 6152 - 16 1036 39032 132 6 0 702 0 4 182 chain 18675 chr2 243199373 + 116705974 116706208 L1PA8 5853 + 5366 5600 131010 154 1 2 42 1 0 36 chain 45417 chr2 243199373 + 116706914 116707483 L1PA7 6471 + 5900 6469 62573 236 2 3 174 0 9 7 9 0 56 2 1 83 chain 496420 chr2 243199373 + 116717649 116723727 L1PA6 6164 - 4 6164 7044 298 0 30 434 2 1 28 0 1 52 0 5 174 11 0 209 1 2 67 1 15 128 0 1 58 0 1 4 1 0 3 1 0 266 0 1 486 0 1 62 6 5 125 2 3 4 0 1 330 0 5 60 9 7 29 0 4 42 0 1 25 0 1 15 0 1 363 0 2 51 0 1 162 4 6 547 0 1 179 1 6 411 0 1 112 6 2 427 0 1 70 12 30 633 0 3 167 chain 42529 chr2 243199373 + 116742965 116743453 L1PA4 6152 - 15 502 65982 352 1 0 135 chain 41876 chr2 243199373 + 116750883 116751359 L1PA5 6144 + 5656 6132 66794 476 chain 53061 chr2 243199373 + 116752558 116753214 L1PA6 6164 - 17 676 56980 132 7 0 6 4 11 166 0 1 37 0 1 253 0 1 51 chain 9759 chr2 243199373 + 116753287 116753408 MSTA-int 1630 + 1484 1611 161805 24 0 6 97 chain 25213 chr2 243199373 + 116754309 116754615 L1PA8A 6298 - 53 361 103672 52 9 11 245 chain 42368 chr2 243199373 + 116769046 116769628 L1PA8 5853 + 5265 5841 66190 149 0 4 146 1 0 44 4 2 65 5 4 13 10 6 42 2 1 19 4 3 78 chain 25079 chr2 243199373 + 116786266 116786638 LTR8 732 + 222 625 104408 19 0 2 69 9 36 156 0 5 18 21 18 80 chain 305279 chr2 243199373 + 116793832 116797252 L1PA4 6152 + 2720 6151 13200 58 1 8 2520 0 4 841 chain 8123 chr2 243199373 + 116806383 116806517 L1PA13 3608 - 123 249 168705 18 1 0 19 2 0 5 2 0 47 2 0 5 2 1 31 chain 556160 chr2 243199373 + 116806517 116812543 L1PA2 6032 - 0 6031 706 2900 0 4 929 0 1 1083 0 1 378 1 0 735 chain 52227 chr2 243199373 + 116832713 116833423 L1PA10 4194 - 33 725 57485 11 1 0 33 3 0 35 8 0 109 7 0 311 12 13 180 chain 22797 chr2 243199373 + 116844467 116844742 AluY 311 + 28 299 116584 104 0 1 157 5 0 9 chain 28895 chr2 243199373 + 116847287 116847596 AluYa5 310 - 0 310 89475 159 0 1 150 chain 133827 chr2 243199373 + 116859587 116861213 L1PA7 6471 - 84 1957 27254 249 0 2 131 0 236 92 15 16 37 0 3 152 0 4 694 0 1 256 chain 55909 chr2 243199373 + 116871632 116872391 MER4E 760 - 7 760 55180 12 0 3 304 1 0 71 0 2 17 4 1 85 15 8 67 14 13 152 0 1 17 chain 30907 chr2 243199373 + 116876898 116877271 THE1A-int 1579 + 2 375 82674 373 chain 350202 chr2 243199373 + 116877286 116881140 L1PA3long 6157 - 0 3861 11598 154 0 1 701 0 1 2040 0 3 711 0 1 218 0 1 30 chain 12489 chr2 243199373 + 116897854 116897996 L1PA5 6144 + 5990 6132 150297 142 chain 32755 chr2 243199373 + 116899261 116899697 LTR7 482 - 12 482 79605 162 0 3 41 8 40 109 15 14 101 chain 9500 chr2 243199373 + 116901485 116901592 L1PA5 6144 - 8 115 163076 107 chain 23389 chr2 243199373 + 116920973 116921270 THE1A 353 + 0 301 113707 35 0 5 70 1 0 191 chain 24427 chr2 243199373 + 116922832 116923148 THE1A-int 1579 + 1254 1571 107932 76 8 7 4 0 1 38 0 1 190 chain 19048 chr2 243199373 + 116923158 116923418 THE1A 353 + 2 261 129981 109 16 15 135 chain 3286 chr2 243199373 + 116923429 116923470 THE1A 353 + 278 319 219259 41 chain 5256 chr2 243199373 + 116933258 116933323 MER53 195 + 125 190 192446 65 chain 32015 chr2 243199373 + 116936384 116936822 LTR7 482 - 8 482 80837 41 13 14 122 0 31 17 1 0 24 1 0 30 0 7 73 15 14 101 chain 265394 chr2 243199373 + 116943531 116946873 HERVH-int 3825 - 0 3825 15421 487 8 218 822 0 2 580 4 31 27 0 4 517 0 4 312 139 426 14 60 10 38 1 0 333 chain 30305 chr2 243199373 + 116946875 116947286 LTR7 482 - 0 482 83887 218 8 40 108 8 47 69 chain 21361 chr2 243199373 + 116955446 116955704 AluSp 311 - 14 272 122649 258 chain 220766 chr2 243199373 + 116991648 116994444 L1PA7 6471 + 3640 6470 17831 54 1 10 51 0 1 147 66 6 7 0 3 61 0 1 4 1 0 49 11 15 220 1 0 212 0 4 548 0 1 267 1 66 257 0 8 81 1 4 87 1 0 504 1 0 6 1 0 6 1 0 12 0 1 137 chain 3318 chr2 243199373 + 117000315 117000353 5S 121 + 2 40 218622 38 chain 42220 chr2 243199373 + 117008927 117009422 MER9a2 513 + 0 494 66376 14 1 0 480 chain 257780 chr2 243199373 + 117010041 117013207 HERVK9-int 4720 + 6 4720 15822 15 1 0 8 19 7 13 8 5 4 1 0 66 1 0 8 1 0 30 1 0 68 1 2 1167 0 2 95 0 924 231 9 649 8 3 0 366 1 0 217 0 1 442 1 0 49 0 1 228 0 4 104 chain 40672 chr2 243199373 + 117013207 117013715 MER9a2 513 + 0 513 68335 19 1 0 124 0 1 83 4 9 277 chain 71954 chr2 243199373 + 117017851 117018710 MER11D 897 + 2 890 47495 493 0 4 24 0 2 67 2 25 273 chain 45738 chr2 243199373 + 117025802 117026383 LTR6A 649 + 68 649 62282 109 1 0 5 1 2 248 1 0 196 0 1 20 chain 278021 chr2 243199373 + 117040169 117043805 HERV9-int 5642 + 1552 5642 14747 24 0 1 4 16 15 199 6 505 406 5 0 6 44 49 252 0 1 44 1 0 216 7 5 633 9 4 433 2 1 699 0 4 5 4 0 102 0 1 67 7 6 66 0 1 5 1 0 151 12 10 28 19 17 12 2 1 17 2 0 43 1 0 13 34 11 13 4 0 3 2 0 17 chain 80353 chr2 243199373 + 117045749 117046646 MER11D 897 + 0 897 43453 897 chain 33190 chr2 243199373 + 117046714 117047190 LTR12F 595 + 0 595 78908 71 15 14 15 5 148 21 24 0 96 1 2 228 chain 30074 chr2 243199373 + 117076046 117076451 LTR15 485 + 0 478 84585 25 0 4 34 7 8 76 0 33 96 0 4 146 0 31 21 chain 450751 chr2 243199373 + 117089374 117094941 L1PA5 6144 - 1 5530 8746 300 5 6 690 0 5 11 0 9 99 0 1 153 0 5 228 0 5 87 1 0 66 8 10 198 22 12 326 0 1 240 0 1 173 1 0 127 0 3 20 0 2 144 0 4 18 3 4 437 35 6 158 0 1 288 1 0 555 1 0 323 1 0 207 2 1 47 10 1 219 25 0 338 chain 447456 chr2 243199373 + 117116013 117121560 L1PA7 6471 + 0 6465 8829 123 25 29 88 0 871 45 0 1 174 22 23 112 2 4 298 12 9 860 1 2 67 0 4 122 1 2 423 0 3 248 0 1 40 6 10 44 2 3 600 2 1 95 2 1 507 0 5 204 8 1 377 0 1 194 0 1 26 0 9 4 1 0 54 0 18 446 7 11 158 1 0 146 chain 99004 chr2 243199373 + 117124987 117126203 L1PA7 6471 - 7 1231 37027 5 2 0 140 1 0 691 0 4 8 6 8 134 0 5 124 5 6 6 1 0 93 chain 132949 chr2 243199373 + 117157287 117159246 L1PA10 4194 + 1174 3149 27431 119 0 5 192 1 2 28 3 0 5 0 3 18 0 1 85 4 0 15 15 21 89 4 3 66 1 2 101 8 21 33 6 0 151 14 17 41 0 1 29 0 4 227 0 10 137 35 36 22 3 0 6 7 1 12 22 27 118 5 0 303 17 7 17 chain 25586 chr2 243199373 + 117164040 117164376 THE1B 368 + 0 348 101798 44 0 15 110 1 0 31 13 11 137 chain 123618 chr2 243199373 + 117184941 117186353 L1PA5 6144 - 4 1423 29835 41 1 3 801 0 4 565 0 1 4 chain 7933 chr2 243199373 + 117209323 117209456 THE1D 372 - 0 126 171428 86 23 16 24 chain 79175 chr2 243199373 + 117227175 117228260 MER11A 1151 - 0 1151 43963 60 7 6 163 0 9 10 1 2 5 1 0 37 6 40 69 0 4 56 1 0 5 9 12 114 1 0 21 3 5 89 0 1 33 0 1 20 0 1 88 14 11 11 0 9 182 0 8 79 chain 13557 chr2 243199373 + 117281448 117281690 L1PREC2 3366 + 1533 1770 146148 44 8 4 8 0 2 7 22 15 32 1 4 93 5 6 22 chain 9539 chr2 243199373 + 117287075 117287267 MER41A 554 + 334 552 162891 112 64 90 16 chain 425277 chr2 243199373 + 117310401 117315507 L1PA5 6144 + 0 6144 9412 118 10 24 14 0 12 28 7 18 4 1 0 8 0 1 94 1 0 379 1 2 452 0 3 12 9 0 504 1 0 640 6 1 850 2 0 11 0 1 77 0 1 182 5 17 231 0 1 255 0 903 34 0 1 481 0 99 342 0 1 170 2 1 59 1 0 104 2 0 9 chain 58862 chr2 243199373 + 117329391 117330326 L1PA8 5853 - 856 1775 53481 138 90 68 156 1 2 251 14 16 26 1 0 86 37 41 135 chain 46702 chr2 243199373 + 117330330 117330926 L1PA8 5853 + 3471 4065 61454 7 4 0 142 0 1 48 0 1 395 chain 28553 chr2 243199373 + 117334936 117335244 AluYa5 310 + 0 307 90944 132 1 0 175 chain 95183 chr2 243199373 + 117338656 117339709 L1PA4 6152 + 5099 6152 38040 1053 chain 106359 chr2 243199373 + 117360496 117361768 L1PA7 6471 + 5186 6466 35161 435 0 3 76 0 2 231 0 1 522 0 2 8 chain 32797 chr2 243199373 + 117361922 117362306 THE1A-int 1579 + 1196 1579 79538 327 1 0 56 chain 7912 chr2 243199373 + 117370235 117370332 MER84 505 + 27 125 171570 43 0 1 54 chain 16899 chr2 243199373 + 117370350 117370552 L1PA7 6471 - 14 227 135850 49 0 12 80 1 0 72 chain 136123 chr2 243199373 + 117381500 117383173 L1PA7 6471 + 4787 6468 26812 252 0 1 253 1 0 4 14 16 311 2 0 74 0 2 487 0 6 275 chain 122571 chr2 243199373 + 117398768 117400112 L1PA3long 6157 - 920 2265 30201 1292 0 1 52 chain 79602 chr2 243199373 + 117400119 117401011 L1PA3long 6157 + 5258 6152 43776 125 0 2 767 chain 7107 chr2 243199373 + 117412007 117412473 L1M1 2793 + 540 893 176703 15 9 4 12 1 0 7 2 1 10 3 0 10 35 20 16 96 30 37 59 45 18 96 88 40 chain 14017 chr2 243199373 + 117414568 117414858 THE1B 368 - 85 368 144520 86 35 28 16 11 10 26 36 38 31 0 1 33 2 0 14 chain 18112 chr2 243199373 + 117439544 117439757 L1PA6 6164 + 5947 6160 132563 213 chain 4004 chr2 243199373 + 117439910 117439955 Tigger3b 1229 + 156 201 207339 45 chain 5693 chr2 243199373 + 117457471 117457610 MER47B 469 + 173 362 188176 16 56 106 67 chain 64532 chr2 243199373 + 117469083 117469820 L1PA5 6144 - 0 736 50783 339 1 0 397 chain 45108 chr2 243199373 + 117474692 117475358 LTR66 600 + 0 600 62923 11 7 9 79 5 1 66 0 1 170 71 0 70 0 6 50 0 3 13 3 0 121 chain 31702 chr2 243199373 + 117475658 117476300 HERVL66-int 1251 + 191 737 81324 61 28 0 47 21 1 17 14 9 12 61 34 29 0 1 96 1 0 55 18 7 30 7 4 42 5 4 38 1 0 59 chain 44445 chr2 243199373 + 117478479 117479165 LTR66 600 + 0 599 63640 200 1 0 135 71 0 68 0 6 44 2 1 16 17 0 13 3 0 20 0 1 34 2 1 60 chain 23086 chr2 243199373 + 117506087 117506356 L1PA4 6152 - 0 283 115214 112 0 14 157 chain 261898 chr2 243199373 + 117512545 117516247 MER61-int 3695 + 0 3695 15592 26 8 4 20 1 0 24 0 1 94 62 23 80 1 0 77 8 12 11 1 0 9 1 6 23 1 2 95 12 13 17 7 6 23 0 1 8 0 11 56 16 12 69 0 1 8 1 0 302 16 14 202 0 1 30 1 0 138 14 13 64 0 4 102 14 22 157 6 7 343 0 1 327 6 13 204 6 7 10 15 16 59 1 0 95 1 0 37 1 0 55 0 1 110 0 2 7 9 8 65 1 0 4 2 0 4 0 1 20 0 2 433 0 1 82 chain 8733 chr2 243199373 + 117521616 117521772 MER50 708 - 22 182 167009 68 2 0 5 14 16 38 12 16 17 chain 38035 chr2 243199373 + 117561627 117562447 L1PB1 5432 - 310 5096 72080 8 21 0 8 0 3 5 0 4 11 0 4 81 14 15 66 3 0 76 42 39 192 6 5 22 91 4074 101 0 2 5 8 5 60 chain 46961 chr2 243199373 + 117564317 117564831 L1PA3long 6157 + 5628 6142 61243 514 chain 79180 chr2 243199373 + 117581721 117582614 L1PA4 6152 + 5259 6152 43961 240 0 1 311 0 1 226 0 1 107 3 0 6 chain 31115 chr2 243199373 + 117589020 117589386 L1PA4 6152 + 5779 6146 82313 259 0 1 107 chain 35949 chr2 243199373 + 117621641 117622052 L1PA3long 6157 - 0 410 74959 259 1 0 151 chain 455091 chr2 243199373 + 117624970 117632151 L1PA8A 6298 - 18 6270 8578 12 0 2 5 1 0 4 9 7 63 10 12 23 0 4 105 1 0 53 0 10 151 1 0 81 0 4 171 2 3 86 0 1 6 0 5 63 2 1 1305 0 1 112 11 12 106 1 2 61 0 1 398 10 5 39 21 20 137 0 11 52 5 4 379 1 5 179 0 4 206 0 2 32 0 5 226 17 16 51 910 0 847 0 1 6 1 0 36 44 45 224 1 0 358 3 4 4 1 0 76 8 6 7 1 0 16 2 0 74 22 14 10 2 1 42 2 0 8 5 0 14 2 1 8 1 0 6 11 9 12 7 4 15 2 0 11 2 1 7 2 1 11 2 1 9 38 29 19 3 0 11 24 16 6 3 0 11 1 0 16 1 0 6 6 0 6 chain 79122 chr2 243199373 + 117629194 117630077 L1PA3long 6157 - 0 891 43988 319 2 9 297 0 1 265 chain 42668 chr2 243199373 + 117644010 117644577 L1PA8 5853 + 5290 5850 65821 274 1 0 44 2 0 73 1 0 11 1 0 48 2 1 19 1 0 90 chain 17964 chr2 243199373 + 117654102 117654468 THE1D 372 - 0 372 132950 32 1 0 112 123 130 98 chain 102592 chr2 243199373 + 117666695 117667851 L1PA4 6152 + 4987 6143 36108 1156 chain 170038 chr2 243199373 + 117686873 117688751 L1PA3long 6157 - 1402 3282 22044 391 0 4 1151 2 0 334 chain 125916 chr2 243199373 + 117688751 117690149 L1PA3long 6157 + 4755 6152 29041 1307 1 0 90 chain 5739 chr2 243199373 + 117711466 117711558 MER20 218 - 87 179 187740 23 0 1 16 12 11 41 chain 291063 chr2 243199373 + 117739544 117743086 L1PA6 6164 + 428 6157 13953 83 1 0 1651 0 2177 285 0 9 19 0 5 227 0 2 164 0 1 70 0 1 14 12 13 141 0 5 451 0 1 378 14 0 32 chain 47557 chr2 243199373 + 117746859 117747381 L1PA3long 6157 + 5627 6149 60804 522 chain 498290 chr2 243199373 + 117758727 117764848 L1PA6 6164 + 1 6160 6938 159 1 2 32 1 2 313 2 1 60 4 10 110 0 5 105 0 17 18 3 0 403 0 1 195 0 3 888 0 1 74 0 1 88 5 6 779 0 2 417 0 4 14 2 0 7 1 0 43 1 2 135 32 42 110 2 1 164 0 4 16 0 1 54 0 1 188 27 10 561 0 1 1100 0 2 7 chain 32507 chr2 243199373 + 117769669 117770024 L1PA2 6032 - 0 355 80010 355 chain 6155 chr2 243199373 + 117782508 117782580 tRNA-Gln-CAA_ 72 - 0 72 183944 72 chain 8789 chr2 243199373 + 117812333 117812437 L1PA7 6471 - 3 109 166711 10 0 2 94 chain 3484 chr2 243199373 + 117815673 117815717 MER73 639 - 15 58 215611 39 1 0 4 chain 5998 chr2 243199373 + 117821610 117821684 MER97b 579 - 191 265 185263 74 chain 352 chr2 243199373 + 117828579 117828614 LTR12C 1709 - 991 1026 219626 35 chain 3381 chr2 243199373 + 117828720 117828855 LTR12C 1709 - 654 711 217456 36 83 5 16 chain 47027 chr2 243199373 + 117837359 117837894 L1PA5 6144 + 5609 6144 61182 535 chain 41629 chr2 243199373 + 117845138 117845695 LTR19B 566 + 0 566 67118 102 0 3 301 0 1 4 1 0 62 6 10 10 0 5 19 11 8 41 chain 62600 chr2 243199373 + 117866856 117867616 LTR17 781 + 0 781 51630 320 8 7 399 2 24 31 chain 28410 chr2 243199373 + 117890731 117891101 HERVH-int 3825 + 3449 3825 91542 39 19 20 52 3 8 257 chain 13222 chr2 243199373 + 117892862 117893061 MER4E1 777 - 7 193 147388 16 0 2 127 4 5 24 16 0 12 chain 29868 chr2 243199373 + 117893063 117893381 AluYb8 318 + 0 318 85221 318 chain 23523 chr2 243199373 + 117894752 117895045 L1PA4 6152 - 0 292 112998 6 0 5 130 7 0 103 9 10 38 chain 19248 chr2 243199373 + 117904346 117904667 THE1B-int 1605 - 1278 1605 129382 48 0 6 7 22 24 92 13 7 27 0 3 83 17 18 12 chain 541397 chr2 243199373 + 117913610 117919620 L1PA2 6032 + 0 6031 2606 74 0 1 157 0 4 18 0 3 60 1 0 516 0 4 283 0 1 1144 0 1 3590 0 2 149 1 0 4 0 7 13 chain 30245 chr2 243199373 + 117920848 117921300 MLT2A2 560 - 0 560 84077 54 0 1 4 1 0 63 1 0 25 0 11 9 0 98 68 33 34 13 1 0 180 chain 71094 chr2 243199373 + 117925504 117926453 MER11B 1079 - 128 1071 47893 181 8 2 173 37 35 301 20 17 12 0 5 217 chain 19903 chr2 243199373 + 117942621 117942841 L1PA2 6032 + 5812 6032 127469 220 chain 22420 chr2 243199373 + 117944777 117945025 L1PA4 6152 + 5895 6143 118375 248 chain 94590 chr2 243199373 + 117983318 117984388 L1PA4 6152 - 0 1076 38188 6 0 5 153 0 1 911 chain 6918 chr2 243199373 + 117984388 117985409 L1PA4 6152 + 4052 5073 37153 752 5 0 7 1 6 256 chain 190471 chr2 243199373 + 117991365 117993672 L1PA7 6471 + 4122 6454 20002 14 5 6 521 0 8 276 0 1 70 0 1 573 0 2 27 1 0 216 0 1 4 4 3 15 0 1 503 5 16 33 0 1 40 chain 2731 chr2 243199373 + 117998524 117998927 L1PA4 6152 + 5739 6139 37153 12 0 1 88 3 0 60 1 0 239 chain 70672 chr2 243199373 + 118000419 118001213 L1PA4 6152 - 6 799 48077 762 1 0 31 chain 16999 chr2 243199373 + 118001213 118001418 L1PA4 6152 + 5146 5351 134930 31 2 1 141 0 1 31 chain 3173 chr2 243199373 + 118021414 118021770 L1M4c 1769 - 680 1025 221469 21 279 281 35 13 0 8 chain 41509 chr2 243199373 + 118036328 118036779 LTR7 482 + 0 482 67268 260 0 31 191 chain 297727 chr2 243199373 + 118036781 118040350 HERVH-int 3825 + 0 3825 13539 489 2 0 45 11 6 30 1 0 10 1 0 24 29 0 8 2 40 4 1 0 42 2 1 43 6 5 7 0 2 7 0 2 13 0 3 37 1 2 865 4 31 299 0 10 1067 0 3 25 8 218 117 0 1 369 chain 43969 chr2 243199373 + 118041604 118042085 LTR7 482 + 0 482 64234 225 0 1 256 chain 44221 chr2 243199373 + 118068712 118069446 MER4E 760 + 0 732 63916 17 2 0 60 15 93 12 77 0 37 6 3 43 2 0 5 14 16 71 10 13 76 1 0 286 chain 21925 chr2 243199373 + 118095451 118095684 L1PA3long 6157 - 2 235 120523 233 chain 4186 chr2 243199373 + 118097884 118097931 MADE1 96 - 2 49 204751 47 chain 35799 chr2 243199373 + 118100085 118100547 L1PA7 6471 + 5930 6397 75134 20 7 4 56 0 2 25 0 1 81 0 5 273 chain 27606 chr2 243199373 + 118122924 118123285 THE1B 368 - 0 366 94332 46 0 6 134 11 10 170 chain 84425 chr2 243199373 + 118172793 118174105 L1PB 1623 - 37 1313 41747 11 2 0 22 2 0 5 32 26 7 1 0 13 58 49 7 1 0 76 1 0 13 1 7 20 0 1 16 10 4 7 1 0 709 29 18 89 6 5 66 1 0 16 10 8 68 0 1 12 chain 20922 chr2 243199373 + 118204494 118204783 L1PA8A 6298 - 10 309 124205 12 0 9 66 10 18 8 7 0 186 chain 67338 chr2 243199373 + 118204783 118205632 L1PA8A 6298 + 5139 5987 49513 350 3 1 11 1 3 4 1 0 62 0 2 222 1 0 162 5 4 27 chain 14956 chr2 243199373 + 118210943 118211104 L1PA4 6152 - 252 413 141460 161 chain 13857 chr2 243199373 + 118211104 118211259 L1PA4 6152 + 5986 6141 145042 155 chain 290313 chr2 243199373 + 118216680 118219840 L1PA2 6032 - 4 3163 13998 2467 2 1 691 chain 7894 chr2 243199373 + 118227381 118227494 L1PA8A 6298 - 404 520 171692 85 10 13 18 chain 441636 chr2 243199373 + 118230512 118236335 L1PA8 5853 + 108 5853 9010 65 0 1 12 1 2 114 44 32 37 17 8 103 0 1 6 1 0 10 0 1 136 1 0 18 1 0 24 5 12 121 0 1 682 15 14 41 8 1 185 1 3 24 9 0 219 1 0 4 0 1 706 0 1 221 1 0 13 1 2 87 0 3 202 1 0 166 27 1 271 0 1 110 23 25 211 1 0 71 27 7 38 2 0 93 6 5 15 0 4 390 22 0 42 1 0 142 5 6 99 1 0 92 2 0 7 0 1 64 0 2 120 5 6 29 0 6 4 1 0 301 1 12 48 2 0 67 3 2 15 1 0 41 7 6 19 1 0 93 chain 34888 chr2 243199373 + 118243689 118244116 LTR3 431 + 0 429 76357 198 0 1 207 0 1 22 chain 23432 chr2 243199373 + 118266109 118266461 THE1B 368 - 2 368 113469 73 7 6 21 0 1 73 12 11 9 1 0 61 3 4 42 6 21 44 chain 57116 chr2 243199373 + 118266619 118267467 L1PB2 3958 + 2924 3733 54458 100 0 1 80 0 1 137 0 1 9 3 6 11 35 7 30 2 0 56 1 0 13 6 0 63 2 0 12 4 0 22 0 2 70 1 0 72 2 0 64 1 0 52 chain 514927 chr2 243199373 + 118282971 118288648 L1PA2 6032 + 10 6032 5680 838 1 26 14 0 1 223 0 1 959 1 0 84 0 4 2813 0 315 578 5 0 7 4 9 150 chain 44094 chr2 243199373 + 118305764 118306253 L1PA3long 6157 + 5667 6157 64099 82 0 1 407 chain 6818 chr2 243199373 + 118307177 118307274 MSTA-int 1630 + 0 95 178819 74 7 5 16 chain 11582 chr2 243199373 + 118311815 118312007 L1MA7 2200 + 1626 1816 153962 47 17 12 35 1 0 49 4 8 39 chain 115948 chr2 243199373 + 118323618 118326720 L1PA7 6471 + 2263 6470 32478 92 1 0 4 0 1 4 5 2708 59 0 1 343 1 0 68 5 3 78 4 0 45 1592 0 537 0 5 6 5 0 253 chain 21967 chr2 243199373 + 118324561 118324817 L1P1 4361 - 33 287 120006 23 1 0 157 1 0 74 chain 93575 chr2 243199373 + 118324817 118325908 L1PA5 6144 + 5069 6138 38487 46 0 1 175 0 4 184 27 0 659 chain 21383 chr2 243199373 + 118331613 118331960 THE1C 375 - 0 366 122574 26 1 0 87 6 16 56 1 0 12 0 1 52 3 0 9 5 8 17 25 35 47 chain 416041 chr2 243199373 + 118336818 118342280 L1P2 5180 + 2 5024 9641 143 6 5 43 8 7 8 0 1 38 1 0 268 2 1 43 8 7 221 1 0 6 2 1 1206 1 0 228 5 10 341 0 3 362 6 7 226 449 0 6 1 0 763 0 1 407 0 4 272 2 4 162 0 2 186 1 0 40 chain 9169 chr2 243199373 + 118342281 118342378 L1PA6 6164 + 6062 6159 164706 97 chain 261419 chr2 243199373 + 118347047 118350959 L1PB1 5432 - 18 4013 15623 10 1 0 13 1 0 21 1 0 16 34 30 13 21 11 4 1 0 16 1 0 40 23 21 51 2 0 6 8 4 14 3 2 4 1 0 12 22 10 13 8 9 32 25 25 227 4 7 5 0 2 147 3 5 16 3 0 56 7 16 312 0 1 28 0 1 77 9 8 14 11 24 183 0 2 169 23 12 174 6 10 13 14 7 144 0 1 5 0 5 146 0 67 6 5 1 110 16 35 165 12 10 7 0 1 122 6 6 88 1 0 100 0 3 109 11 15 104 18 22 221 7 8 155 0 1 14 0 4 124 0 4 77 3 4 218 chain 98660 chr2 243199373 + 118351769 118352899 L1P1 4361 - 20 1148 37109 12 2 1 23 1 0 7 0 1 147 1 0 937 chain 91228 chr2 243199373 + 118357404 118358475 L1PA6 6164 + 5100 6155 39223 173 1 0 371 16 0 111 0 1 399 chain 535362 chr2 243199373 + 118380829 118386846 L1PA3long 6157 + 0 6152 3542 131 1 15 8 11 0 4 2 0 159 10 11 448 0 128 592 0 1 1247 0 1 873 0 2 1179 1 0 1131 0 1 56 1 2 163 chain 532398 chr2 243199373 + 118406766 118412783 L1PA3long 6157 + 4 6155 3922 60 7 8 81 1 2 96 4 5 61 10 11 448 0 128 482 1 7 1154 6 0 149 0 1 468 7 6 447 0 2 2535 chain 4497 chr2 243199373 + 118456818 118456873 MER6B 211 - 153 209 200814 42 0 1 13 chain 75557 chr2 243199373 + 118501567 118502423 L1PA5 6144 - 0 856 45741 13 1 0 325 1 2 516 chain 23740 chr2 243199373 + 118502423 118502699 L1PA5 6144 + 5009 5286 111830 68 1 2 207 chain 227070 chr2 243199373 + 118507235 118509703 L1PA2 6032 + 3556 6025 17484 2347 0 1 121 chain 8730 chr2 243199373 + 118520358 118520459 L1PA8 5853 + 5420 5521 167021 101 chain 25351 chr2 243199373 + 118520461 118520798 L1PA8 5853 + 5522 5853 102947 42 1 0 47 3 1 67 1 0 60 3 2 19 3 2 91 chain 330509 chr2 243199373 + 118523595 118527301 L1PA3long 6157 - 0 3713 12187 856 0 1 1006 0 2 345 0 1 304 0 5 345 7 6 764 1 0 78 chain 548935 chr2 243199373 + 118535760 118541892 L1PA3long 6157 + 4 6153 1585 148 0 1 649 1 18 490 3 4 1145 2 0 654 0 1 172 7 6 2717 0 1 30 1 0 113 chain 69751 chr2 243199373 + 118546012 118546796 L1PA4 6152 - 1 783 48491 72 2 0 710 chain 146450 chr2 243199373 + 118553589 118555307 L1PA6 6164 + 4446 6162 25095 326 1 0 1215 7 6 169 chain 5829 chr2 243199373 + 118560835 118561339 L1PA8A 6298 + 5163 5663 42316 5 1 0 318 1 0 83 2 0 94 chain 538072 chr2 243199373 + 118561356 118567377 L1PA3long 6157 + 19 6147 3141 52 28 2 79 0 1 31 0 1 132 1 0 451 8 136 52 1 5 2943 0 1 766 1 0 1476 chain 7275 chr2 243199373 + 118567386 118568015 L1PA8A 6298 + 5663 6292 42316 629 chain 73745 chr2 243199373 + 118584931 118585801 L1PA5 6144 - 16 899 46650 422 0 11 320 0 2 128 chain 12859 chr2 243199373 + 118585805 118585949 L1PA5 6144 + 5115 5264 148803 31 0 5 113 chain 26222 chr2 243199373 + 118605510 118605847 THE1A 353 + 0 353 99116 57 0 17 36 1 0 119 0 1 4 2 1 118 chain 24726 chr2 243199373 + 118615415 118615706 AluY 311 + 4 296 106287 128 0 1 163 chain 3726 chr2 243199373 + 118628742 118628783 L1MA3 4352 - 3932 3973 211524 41 chain 348018 chr2 243199373 + 118628890 118632814 L1PA4 6152 - 1 3912 11665 156 0 1 1436 1 0 338 1 0 435 0 3 158 4 0 295 11 0 1089 chain 32413 chr2 243199373 + 118633594 118634027 MER4A1 472 + 16 472 80185 202 20 40 4 0 1 128 14 16 65 chain 38685 chr2 243199373 + 118637047 118637598 MLT2A2 560 + 0 560 71168 183 1 0 13 8 13 6 5 0 26 5 4 46 0 1 4 2 1 101 4 15 147 chain 2930 chr2 243199373 + 118637890 118637927 L1MA7 2200 - 113 150 226502 37 chain 9034 chr2 243199373 + 118648042 118648164 LTR32 486 + 298 456 165420 17 1 33 5 0 3 95 0 1 4 chain 190031 chr2 243199373 + 118655482 118657588 L1PA3long 6157 + 1932 4038 20042 2106 chain 188282 chr2 243199373 + 118657588 118659684 L1PA3long 6157 + 4040 6147 20214 1266 1 5 696 3 10 130 chain 222437 chr2 243199373 + 118662724 118665577 L1PA5 6144 - 13 2563 17732 91 0 1 379 1 0 362 1 5 309 315 0 880 0 5 254 0 4 242 1 0 18 chain 35147 chr2 243199373 + 118667194 118667565 L1HS 6032 - 0 371 75998 371 chain 108294 chr2 243199373 + 118667692 118668910 L1PA3long 6157 - 5 1222 34617 12 1 0 1205 chain 69483 chr2 243199373 + 118668910 118669684 L1P1 4361 + 3569 4341 48543 581 1 0 155 1 0 36 chain 527482 chr2 243199373 + 118680705 118686838 L1PA4 6152 + 0 6143 4448 130 1 15 10 23 9 362 36 20 18 6 7 123 0 1 1011 0 3 207 7 12 641 0 4 1701 2 6 71 0 4 97 0 3 481 1 0 346 1 0 12 0 3 846 chain 11567 chr2 243199373 + 118695992 118696122 L1PA2 6032 + 5901 6032 154035 82 0 1 48 chain 23108 chr2 243199373 + 118714467 118714756 AluSp 311 - 13 301 115100 245 2 1 42 chain 3147 chr2 243199373 + 118775572 118775605 MER5B 177 - 7 40 221995 33 chain 26538 chr2 243199373 + 118792304 118792676 THE1C 375 - 0 375 97896 176 14 12 24 9 14 149 chain 118791 chr2 243199373 + 118799533 118801242 L1PB1 5432 - 12 1640 31493 16 1 0 13 1 0 21 1 0 24 2 0 18 3 1 18 25 13 15 1 0 44 1 0 18 1 0 50 2 0 11 6 2 10 1 0 31 3 0 7 60 5 480 1 0 152 4 7 78 0 1 4 0 1 110 11 14 272 1 0 192 chain 553986 chr2 243199373 + 118894576 118900596 L1PA2 6032 - 9 6031 954 11 1 0 1846 0 2 1898 0 4 1368 1 0 583 1 0 55 1 0 255 chain 21307 chr2 243199373 + 118902644 118902918 L1PA8 5853 - 0 268 122836 93 1 0 19 2 1 51 1 0 10 1 0 71 3 1 22 chain 121319 chr2 243199373 + 118921504 118923077 THE1B-int 1605 + 0 1600 30591 423 1 0 5 14 39 63 2 1 377 0 3 264 11 12 413 chain 4537 chr2 243199373 + 118957866 118957924 L1MA4 2864 + 2432 2492 200365 50 0 2 8 chain 7319 chr2 243199373 + 119044497 119044589 MER53 195 - 103 195 175309 92 chain 33819 chr2 243199373 + 119126947 119127388 LTR7 482 - 8 482 77909 37 17 18 124 0 31 39 0 1 224 chain 10034 chr2 243199373 + 119139902 119140025 MER85 139 - 0 133 160410 40 0 10 83 chain 131601 chr2 243199373 + 119157589 119159822 L1MA1 4479 - 293 2479 27714 14 7 0 9 2 1 11 1 0 9 1 0 35 2 0 19 1 0 10 11 10 33 7 5 78 9 5 88 1 0 14 3 1 18 1 0 68 8 7 16 2 0 10 0 1 9 1 0 41 1 3 79 5 8 8 2 0 10 8 7 11 32 30 122 2 0 34 6 8 91 14 7 5 1 0 78 31 25 129 12 6 26 1 0 2 2 0 27 6 5 45 1 0 42 1 0 57 4 8 30 3 1 21 3 2 73 8 7 53 9 10 19 12 9 51 13 16 106 10 9 10 10 0 6 0 3 69 0 12 119 0 2 11 4 0 77 0 3 82 chain 474968 chr2 243199373 + 119167739 119173280 L1PA6 6164 + 558 6149 7882 9 1 0 240 0 17 262 0 3 760 3 5 248 0 1 51 0 7 164 0 1 263 0 3 17 1 0 574 1 2 4 0 1 228 0 1 61 0 3 783 0 9 352 0 2 1125 0 1 394 chain 531282 chr2 243199373 + 119208903 119215314 L1PA7 6471 - 1 6468 4044 40 0 17 21 3 4 250 1 2 187 0 1 162 6 7 158 1 0 409 0 1 261 0 1 272 0 4 215 0 1 448 0 1 511 1 0 599 5 9 46 0 1 198 0 11 90 0 2 65 3 0 487 0 1 598 5 12 12 1 0 89 7 9 168 0 4 470 12 11 203 0 1 248 0 1 159 chain 25165 chr2 243199373 + 119228875 119229162 AluY 311 + 17 307 103935 109 0 1 137 0 2 41 chain 10710 chr2 243199373 + 119243161 119243296 MER57F 435 - 287 435 157374 114 0 13 21 chain 58144 chr2 243199373 + 119243422 119244047 L1PA2 6032 - 1453 2078 53689 625 chain 136906 chr2 243199373 + 119244047 119245525 L1PA2 6032 + 4554 6032 26659 1478 chain 15178 chr2 243199373 + 119265140 119265346 L1PA8 5853 + 5651 5853 140829 28 1 0 12 1 0 49 2 1 19 2 1 92 chain 22713 chr2 243199373 + 119300525 119300844 THE1B 368 + 0 328 117021 44 5 20 108 1 0 8 0 1 4 1 0 11 4 0 98 1 0 34 chain 123523 chr2 243199373 + 119300875 119302471 THE1B-int 1605 + 0 1600 29872 430 1 26 8 0 1 11 6 7 4 1 0 700 5 0 190 18 1 209 0 1 4 1 0 8 chain 56721 chr2 243199373 + 119321693 119322417 MER4A 717 + 1 717 54706 47 0 1 4 1 0 70 7 0 369 1 0 225 chain 60600 chr2 243199373 + 119394121 119394849 L1PA8A 6298 - 9 740 52520 689 1 4 38 chain 57249 chr2 243199373 + 119394864 119395564 L1PA8A 6298 + 4847 5545 54368 16 0 1 347 0 1 129 4 2 146 11 9 47 chain 89451 chr2 243199373 + 119459270 119460314 L1PA5 6144 - 15 1070 39823 98 1 0 28 6 7 252 4 1 455 0 1 33 0 13 167 chain 102088 chr2 243199373 + 119460314 119461455 L1PA5 6144 + 3947 5088 36242 929 0 1 4 1 0 207 chain 32798 chr2 243199373 + 119465372 119466015 L1PA15 4387 + 3736 4356 79530 77 2 0 14 4 0 10 0 1 52 2 0 43 1 0 90 68 69 12 1 0 27 9 8 46 1 0 23 14 9 50 6 3 27 17 18 12 8 2 27 chain 13006 chr2 243199373 + 119493230 119493534 L1MB3 1562 - 13 291 148222 26 1 0 13 8 11 61 2 0 5 33 8 4 1 0 19 28 30 21 5 4 20 1 0 56 chain 23660 chr2 243199373 + 119503347 119503714 THE1B 368 - 0 368 112252 26 3 0 99 48 53 5 1 0 4 0 1 4 1 0 176 chain 25200 chr2 243199373 + 119518499 119518935 L1MA3 4352 + 3926 4321 103742 162 48 18 6 3 0 93 0 1 26 9 5 21 2 0 24 2 1 5 1 0 29 1 0 4 chain 5071 chr2 243199373 + 119548254 119548316 MLT1A0 366 + 267 329 194415 62 chain 23941 chr2 243199373 + 119555810 119556103 AluYf4 310 + 0 308 110681 48 0 14 143 9 10 93 chain 17842 chr2 243199373 + 119643896 119644101 L1PA4 6152 - 0 205 133268 205 chain 557630 chr2 243199373 + 119653337 119659365 L1PA2 6032 - 0 6029 540 1579 0 1 2261 1 0 453 0 1 1734 chain 9225 chr2 243199373 + 119670984 119671362 LTR39 781 - 420 773 164426 70 176 161 53 63 53 16 chain 65056 chr2 243199373 + 119685612 119686334 L1PA4 6152 - 0 720 50547 6 2 0 714 chain 81928 chr2 243199373 + 119707240 119708290 HERVIP10FH-int 2884 - 1690 2735 42792 96 0 1 162 1 0 4 0 1 212 0 1 151 1 0 167 2 0 185 5 1 64 chain 391476 chr2 243199373 + 119712212 119717654 L1PB1 5432 + 19 5404 10407 29 25 26 243 1 2 72 49 15 196 1 0 15 0 1 23 2 0 5 4 6 131 0 1 517 22 7 87 1 0 7 8 1 10 12 4 477 5 6 475 0 4 113 0 1 42 0 1 146 4 1 126 2 3 19 28 11 53 5 1 179 9 18 23 1 0 362 8 9 247 5 0 74 0 1 299 1 0 7 0 1 54 0 20 369 1 0 70 0 3 172 1 0 8 5 4 244 1 19 24 3 4 7 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 17 0 8 19 1 0 15 27 15 16 11 8 11 2 0 24 1 0 20 2 1 13 chain 533675 chr2 243199373 + 119752937 119762059 L1PA4 6152 - 18 6146 3742 852 0 4 374 0 1 1005 8 0 1046 2987 0 498 0 1 33 2 4 498 1 0 542 0 1 874 4 0 237 5 3 4 1 0 151 chain 80541 chr2 243199373 + 119756234 119757135 L1PA2 6032 - 4 902 43372 9 4 0 158 0 1 730 chain 189771 chr2 243199373 + 119757141 119759209 L1PA2 6032 + 3027 5095 20052 21 0 1 38 1 0 2008 chain 50082 chr2 243199373 + 119790026 119790614 L1PA6 6164 - 1367 1954 58958 38 3 2 547 chain 116613 chr2 243199373 + 119790614 119791981 L1PA6 6164 + 4791 6161 32258 256 0 1 83 0 1 333 5 6 690 chain 374270 chr2 243199373 + 119802028 119807606 L1PB1 5432 - 10 5353 10953 18 1 0 13 1 0 21 1 0 19 7 5 14 18 12 7 9 0 29 13 12 35 1 0 12 9 8 48 2 0 11 16 11 7 1 0 26 3 0 8 268 29 24 2 1 26 0 2 209 3 0 6 5 0 28 0 3 73 0 2 79 6 7 401 0 2 26 0 1 8 0 1 222 7 9 50 8 13 86 0 1 16 5 6 38 11 13 121 1 2 235 0 1 249 1 0 7 8 12 110 0 1 92 0 3 315 0 1 35 10 40 120 0 4 123 1 0 299 4 5 48 16 0 26 1 0 119 15 12 31 0 1 171 5 9 130 18 0 7 1 0 339 10 24 106 0 1 23 8 0 137 0 13 199 0 1 152 9 10 100 2 1 89 8 1 120 chain 81394 chr2 243199373 + 119812056 119813162 MER11A 1151 - 0 1151 43012 183 0 1 49 0 1 57 43 0 24 1 0 147 9 3 172 41 39 181 4 0 129 0 99 66 chain 15100 chr2 243199373 + 119818226 119818406 L1PA6 6164 + 5979 6159 141028 180 chain 3282 chr2 243199373 + 119828990 119829100 MER53 195 + 0 129 219322 12 8 27 19 17 21 18 16 12 20 chain 517392 chr2 243199373 + 119853344 119859423 L1PA5 6144 + 0 6138 5438 71 0 1 48 5 19 20 1 26 612 3 20 354 23 14 20 1 0 989 0 2 197 0 1 775 0 1 339 16 15 672 0 2 198 2 0 425 0 9 187 0 1 276 1 0 844 chain 21038 chr2 243199373 + 119928709 119928981 L1PA8 5853 - 0 266 123773 93 1 0 19 2 1 52 2 1 5 1 0 74 2 0 21 chain 40604 chr2 243199373 + 120031844 120032355 L1PA6 6164 - 2 565 68431 91 6 37 237 0 21 166 0 1 4 1 0 6 chain 33464 chr2 243199373 + 120036034 120036481 L1PA8 5853 + 5407 5853 78470 157 1 0 44 2 0 70 2 1 54 9 8 19 2 1 43 0 5 44 chain 4331 chr2 243199373 + 120074006 120074059 MLT1D 503 + 405 458 202823 53 chain 14834 chr2 243199373 + 120113183 120113387 MER1B 344 + 134 343 141828 133 17 22 54 chain 78080 chr2 243199373 + 120131339 120132414 MER11A 1151 - 9 1151 44474 158 0 1 46 1 2 14 0 1 36 18 0 22 44 27 145 5 6 145 0 1 94 8 9 106 0 2 33 4 0 66 1 0 50 0 99 79 chain 59415 chr2 243199373 + 120133610 120134357 HERVK11-int 2540 - 302 1054 53163 128 2 6 46 0 1 33 1 0 10 2 1 98 0 8 72 1 0 104 8 3 242 chain 3201 chr2 243199373 + 120134358 120134391 MER11C 1089 - 1056 1089 220929 33 chain 33611 chr2 243199373 + 120137371 120137819 MER4A1 472 - 0 472 78225 197 17 16 14 0 21 210 0 4 10 chain 11942 chr2 243199373 + 120137842 120138035 MER4-int 2692 - 15 231 152437 92 28 52 30 1 0 42 chain 36726 chr2 243199373 + 120138303 120138848 PABL_A-int 1935 - 42 584 73918 4 1 0 9 2 0 9 6 1 15 1 0 19 5 4 78 1 0 19 1 14 74 1 0 20 10 9 12 1 0 86 1 0 5 1 0 164 chain 4044 chr2 243199373 + 120142555 120143018 MLT1G1 539 - 42 527 206749 13 5 0 8 1 0 6 177 187 30 186 202 11 0 2 26 chain 24314 chr2 243199373 + 120177770 120178104 MSTB1-int 1597 - 4 339 108587 35 21 21 42 0 1 236 chain 4496 chr2 243199373 + 120206649 120206716 MER5A1 166 - 38 121 200831 21 0 15 11 1 2 34 chain 5609 chr2 243199373 + 120227579 120227691 MER58A 224 - 65 182 188998 35 28 33 49 chain 13580 chr2 243199373 + 120262892 120263050 L1PA4 6152 + 5985 6143 146053 158 chain 17353 chr2 243199373 + 120267565 120267790 L1PA6 6164 - 2 227 134649 126 1 0 44 6 7 48 chain 22662 chr2 243199373 + 120277108 120277411 AluSg 306 + 8 305 117257 115 1 0 14 7 4 6 0 3 120 5 0 35 chain 11082 chr2 243199373 + 120286826 120286994 LTR56 451 + 146 315 155877 45 19 20 104 chain 14063 chr2 243199373 + 120287003 120287152 AluYb8 318 + 165 314 144344 149 chain 12608 chr2 243199373 + 120320748 120320914 MER2 342 - 88 255 149811 72 1 2 93 chain 4753 chr2 243199373 + 120365502 120365698 L1MB7 1623 - 196 375 197876 4 1 0 42 67 61 17 3 0 11 34 27 17 chain 119418 chr2 243199373 + 120370205 120371941 THE1C-int 1605 - 8 1604 31258 10 137 0 252 1 0 344 0 1 226 5 14 294 52 11 8 32 0 29 0 1 213 0 54 21 0 4 98 1 3 13 chain 5057 chr2 243199373 + 120370276 120370336 THE1C 375 - 315 375 194566 60 chain 21512 chr2 243199373 + 120371985 120372320 THE1C 375 - 43 375 122094 124 27 24 15 2 1 77 7 8 83 chain 545320 chr2 243199373 + 120375865 120382607 L1PA7 6471 + 0 6469 2033 403 0 2 453 9 10 1481 1 0 282 6 1 9 305 0 75 0 8 14 1 4 78 0 1 277 1 5 103 0 1 176 20 42 17 2 1 393 1 0 638 0 1 49 0 2 429 1 0 333 1 0 333 1 0 836 3 1 11 chain 295072 chr2 243199373 + 120422016 120425990 L1PA8A 6298 + 2607 6292 13698 242 4 5 531 14 17 16 6 12 335 3 0 91 2 1 4 0 1 9 0 1 104 1 2 284 342 8 160 8 26 530 3 1 228 0 8 164 0 4 81 0 4 12 10 8 72 0 2 97 0 1 304 0 1 266 8 10 43 chain 24428 chr2 243199373 + 120447635 120448034 MSTA 426 + 0 426 107926 103 5 10 31 0 1 6 0 10 29 51 49 62 1 15 59 1 0 51 chain 13586 chr2 243199373 + 120456967 120457261 MER61A 341 - 0 341 146034 38 20 20 6 1 0 39 35 67 10 0 1 62 17 16 19 4 20 43 chain 3133 chr2 243199373 + 120523606 120523641 Charlie17a 212 - 1 36 222326 35 chain 4003 chr2 243199373 + 120545829 120545938 Arthur1B 1073 - 32 146 207359 18 1 0 9 13 26 20 10 0 8 5 8 25 chain 141057 chr2 243199373 + 120561868 120563526 L1PA6 6164 - 10 1668 25974 615 4 5 104 7 0 172 0 1 118 0 2 5 7 0 222 0 10 404 chain 234434 chr2 243199373 + 120563527 120568816 L1PA6 6164 + 1871 6162 17067 323 0 2 137 0 1 287 0 1 98 6 4 265 0 1 199 0 1 48 0 1 120 0 2 752 1 0 252 0 4 135 2489 1484 168 3 0 6 chain 25148 chr2 243199373 + 120570828 120571122 AluSp 311 - 17 311 104010 294 chain 42611 chr2 243199373 + 120574007 120574592 Charlie3 2679 - 0 615 65885 56 33 30 39 1 4 6 3 0 319 2 0 96 0 35 30 chain 7247 chr2 243199373 + 120574955 120575040 L1P1 4361 - 2628 2713 175783 85 chain 15144 chr2 243199373 + 120575552 120575789 L1P1 4361 - 33 268 140931 23 1 0 136 26 25 51 chain 14647 chr2 243199373 + 120588388 120588562 MSTA 426 + 252 426 142429 174 chain 28472 chr2 243199373 + 120598178 120598722 L1PA11 4918 - 289 792 91299 18 47 33 11 2 0 13 1 0 15 16 9 10 8 3 9 4 0 18 0 2 16 2 0 63 1 9 5 1 0 70 1 0 94 0 4 10 22 5 8 1 0 9 0 1 61 1 0 7 chain 142045 chr2 243199373 + 120600810 120602807 SVA_F 1814 - 249 1804 25813 378 131 0 11 1 0 214 130 18 56 198 0 878 chain 7022 chr2 243199373 + 120601189 120601319 SVA_F 1814 - 627 804 102754 17 5 52 108 chain 8335 chr2 243199373 + 120601585 120601675 SVA_F 1814 - 540 630 91075 90 chain 15003 chr2 243199373 + 120601731 120601893 SVA_F 1814 - 686 847 91075 1 1 0 160 chain 2670 chr2 243199373 + 120601893 120601925 SVA_F 1814 - 781 813 191638 32 chain 3253 chr2 243199373 + 120615129 120615223 LTR9B 643 - 549 637 219942 14 1 0 4 3 0 13 30 28 29 chain 23465 chr2 243199373 + 120618339 120618638 AluSq2 311 + 5 300 113293 128 0 1 104 5 0 62 chain 46601 chr2 243199373 + 120626027 120626541 MER9a2 513 + 0 513 61531 13 1 0 500 chain 25471 chr2 243199373 + 120693584 120693877 AluYk4 311 - 18 311 102352 293 chain 9665 chr2 243199373 + 120714999 120715156 MER1B 344 + 189 339 162268 77 27 20 53 chain 4344 chr2 243199373 + 120717054 120717131 BC200 147 + 16 92 202670 17 17 16 43 chain 25294 chr2 243199373 + 120726081 120726379 AluY 311 + 0 294 103252 13 5 1 280 chain 108657 chr2 243199373 + 120754377 120755784 LTR12C 1709 + 0 1709 34524 128 0 1 248 2 0 92 3 1 103 12 13 68 0 278 140 0 47 97 19 12 55 12 0 275 1 0 54 14 13 84 chain 28762 chr2 243199373 + 120760176 120760554 L1PA8 5853 + 5488 5853 90055 74 1 0 47 2 0 69 0 1 14 1 0 47 2 1 19 1 0 10 8 0 83 chain 22397 chr2 243199373 + 120765043 120765337 AluSc 308 - 10 297 118497 75 9 3 180 1 0 29 chain 252809 chr2 243199373 + 120779763 120783138 L1PA7 6471 - 5 4016 16091 8 2 0 321 0 1 341 8 10 164 1 0 102 1 10 23 9 0 198 1 0 269 0 1 192 0 1 147 0 4 358 2 0 105 324 0 267 15 24 29 0 1 303 0 947 185 chain 11349 chr2 243199373 + 120788784 120788922 LTR8 732 + 582 724 154896 6 0 4 132 chain 517094 chr2 243199373 + 120803248 120809394 L1PA5 6144 - 3 6144 5475 76 0 2 74 6 7 21 9 15 189 0 1 16 2 3 412 0 1 5 1 0 24 3 1 280 1 0 1039 3 4 288 0 2 172 1 0 140 0 1 114 0 10 42 1 0 26 1 0 192 14 0 157 0 4 509 2 1 59 3 1 57 0 2 758 0 1 21 1 6 729 0 3 398 42 1 143 1 15 61 15 20 38 chain 28775 chr2 243199373 + 120818792 120819098 AluYa5 310 - 5 310 89999 179 1 0 126 chain 3756 chr2 243199373 + 120824591 120824630 L1P3 4156 - 4117 4156 211015 39 chain 367571 chr2 243199373 + 120825558 120830516 L1PA7 6471 + 0 6470 11164 402 3 78 213 21 1734 24 1 2 176 336 3 84 0 8 33 0 4 252 16 20 270 0 1 135 0 5 92 21 0 63 0 2 403 7 1 660 0 8 253 2 54 297 0 1 53 2 0 80 1 2 111 21 13 72 5 8 232 1 6 51 1 0 388 28 27 135 1 2 12 chain 477973 chr2 243199373 + 120837686 120843203 L1PA5 6144 - 0 5521 7802 147 0 1 559 0 1 142 2 0 116 0 1 1243 0 1 48 0 2 99 7 8 127 0 1 279 0 1 173 3 0 16 0 3 349 0 2 191 1 0 64 0 3 39 1 2 426 25 1 672 1 0 270 0 3 76 0 1 152 0 13 289 chain 44270 chr2 243199373 + 120876491 120877205 L1PA11 4918 - 340 1010 63858 11 2 0 13 1 0 15 12 9 10 8 3 9 4 0 20 16 13 60 3 1 20 2 1 8 0 3 45 4 6 46 0 2 64 41 11 300 chain 158378 chr2 243199373 + 120878787 120880641 L1PA6 6164 - 4 1904 23545 13 0 1 129 8 11 300 0 10 105 0 12 263 0 4 820 0 2 47 5 15 62 0 4 43 1 0 41 0 1 17 chain 110487 chr2 243199373 + 120915376 120917336 L1PA13 3608 + 1908 3548 34077 41 0 1 4 5 14 14 0 3 99 3 2 73 4 6 16 1 2 323 25 34 587 2 1 21 13 10 99 0 4 11 318 0 60 5 4 54 8 5 30 2 3 12 11 7 18 1 0 17 29 21 14 1 0 6 21 12 12 chain 5674 chr2 243199373 + 120940147 120940238 MER45A 178 - 16 109 188355 31 12 14 48 chain 289936 chr2 243199373 + 120943270 120946464 L1PA4 6152 + 2954 6151 14022 982 1 4 2211 chain 8128 chr2 243199373 + 120949829 120949931 HY1 111 + 9 111 170344 102 chain 108774 chr2 243199373 + 120950126 120951327 L1PA3long 6157 + 4956 6157 34490 214 0 1 727 1 0 259 chain 93217 chr2 243199373 + 120992147 120993253 L1PA7 6471 + 5367 6470 38593 253 1 4 8 1 0 87 8 3 748 chain 127946 chr2 243199373 + 121016384 121017892 LTR12C 1709 - 1 1709 28581 480 0 4 107 3 1 5 1 0 74 0 200 729 8 7 101 chain 9063 chr2 243199373 + 121026755 121026907 LTR12_ 688 - 73 234 165245 32 24 0 17 1 34 78 chain 8835 chr2 243199373 + 121029581 121029766 MLT1A 405 - 16 186 166464 55 1 0 12 0 1 7 0 1 5 21 22 28 28 11 28 chain 36127 chr2 243199373 + 121037816 121038288 L1PA8 5853 + 5380 5853 74732 184 1 0 15 0 4 27 2 0 65 15 13 52 2 1 19 1 0 43 3 7 43 chain 11746 chr2 243199373 + 121040765 121040967 MER30 238 + 0 238 153271 15 15 33 60 8 23 58 4 7 42 chain 10184 chr2 243199373 + 121043029 121043145 L1PA4 6152 + 6025 6141 159699 116 chain 4599 chr2 243199373 + 121136311 121136364 MIRc 230 - 110 163 199639 53 chain 68461 chr2 243199373 + 121169761 121170623 L1PA10 4194 - 44 910 49064 33 4 1 214 0 3 98 0 1 148 1 3 254 1 0 57 0 2 52 chain 21402 chr2 243199373 + 121235931 121236189 AluSg4 309 + 36 296 122502 237 0 2 21 chain 96681 chr2 243199373 + 121249481 121250582 L1PA5 6144 + 5032 6132 37650 952 0 7 13 8 0 128 chain 3303 chr2 243199373 + 121532315 121532352 MER102c 337 + 235 272 218925 37 chain 22679 chr2 243199373 + 121553351 121553625 AluSp 311 + 8 287 117169 166 6 11 102 chain 7396 chr2 243199373 + 121596267 121596387 Tigger3a 397 + 42 211 174793 33 15 64 72 chain 17330 chr2 243199373 + 121753151 121753359 AluSx4 309 + 65 273 134713 208 chain 2843 chr2 243199373 + 121756244 121756278 L1MD 993 + 699 734 227960 28 0 1 6 chain 9561 chr2 243199373 + 121787032 121787255 Tigger4a 237 - 0 194 162775 44 68 56 81 17 0 13 chain 7926 chr2 243199373 + 121798188 121798286 HY3 101 - 2 101 171465 35 0 1 63 chain 5344 chr2 243199373 + 121854898 121854960 MER41D 557 + 0 62 191609 62 chain 26155 chr2 243199373 + 121914861 121915229 THE1D 372 + 2 372 99387 164 39 41 165 chain 29099 chr2 243199373 + 121921189 121921493 AluYg6 310 - 6 310 88563 304 chain 27935 chr2 243199373 + 121935073 121935459 LTR7B 505 - 0 505 93221 51 14 13 89 0 41 21 2 1 37 11 81 56 0 10 105 chain 17084 chr2 243199373 + 121951766 121951952 L1PA5 6144 + 5795 5981 135367 186 chain 4042 chr2 243199373 + 122009122 122009196 L1MA8 2339 + 2124 2196 206765 23 15 13 36 chain 23066 chr2 243199373 + 122033645 122033935 L1PA7 6471 - 3 293 115323 10 2 0 6 0 1 163 1 2 108 chain 29204 chr2 243199373 + 122035605 122035911 AluYb8 318 - 12 318 88031 306 chain 18178 chr2 243199373 + 122050510 122050819 MSTA 426 - 0 307 132387 108 24 27 25 0 3 17 9 8 26 3 0 43 12 8 42 chain 24184 chr2 243199373 + 122062074 122062366 AluSp 311 - 7 300 109302 54 0 1 238 chain 6089 chr2 243199373 + 122075582 122075652 Tigger2b_Pri 1066 - 61 131 184499 70 chain 10666 chr2 243199373 + 122083512 122083658 THE1D 372 - 215 372 157541 16 0 1 49 9 19 72 chain 30988 chr2 243199373 + 122085857 122086357 L1PA11 4918 - 351 817 82537 13 1 0 15 31 22 9 4 0 20 8 1 12 2 0 81 2 1 60 9 0 93 1 0 139 chain 7514 chr2 243199373 + 122151776 122151869 MLT1E1A 663 + 164 257 174074 93 chain 95682 chr2 243199373 + 122196134 122197214 L1P1 4361 - 445 1531 37903 658 0 4 95 1 0 130 0 3 196 chain 41435 chr2 243199373 + 122197214 122197670 L1PA2 6032 + 5573 6030 67370 287 0 1 169 chain 100379 chr2 243199373 + 122221423 122222533 L1PA3long 6157 - 0 1112 36661 779 2 1 215 1 4 113 chain 100946 chr2 243199373 + 122222534 122223632 L1PA3long 6157 + 3933 5031 36526 1098 chain 98344 chr2 243199373 + 122225060 122226587 L1PA11 4918 - 419 4889 37210 11 1 0 16 2 0 18 0 6 54 2 1 79 0 4 6 25 24 95 7 13 111 0 1 189 11 10 75 3 2 16 12 17 101 0 9 35 0 1 26 4 5 379 29 2958 18 2 1 5 2 0 33 1 0 52 2 0 5 16 15 23 4 1 42 2 0 13 chain 2644 chr2 243199373 + 122257559 122257597 L1MD 993 + 40 78 231098 27 1 0 5 0 1 5 chain 229133 chr2 243199373 + 122306295 122310010 L1PA14 3548 + 90 3485 17351 58 11 0 55 7 6 8 1 0 9 13 12 30 2 0 15 12 1 13 16 14 10 8 1 101 0 1 33 1 0 181 1 2 95 2 0 11 1 0 171 0 1 125 324 15 259 0 5 129 36 37 130 0 3 178 0 21 160 6 7 181 0 1 68 1 16 20 11 14 167 0 1 80 2 1 19 0 1 133 1 0 143 0 1 53 1 0 52 9 4 58 2 0 5 2 0 19 0 8 74 15 12 13 1 13 6 14 0 68 15 14 100 14 9 38 4 2 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 29861 chr2 243199373 + 122338833 122339149 AluYb8 318 - 2 318 85239 316 chain 112733 chr2 243199373 + 122359778 122361591 L1MA5A 2387 + 630 2306 33467 31 0 1 153 0 9 21 4 5 43 2 0 527 19 24 58 108 1 55 24 9 75 7 6 112 3 0 210 7 13 27 0 1 22 0 1 4 1 3 10 39 38 18 1 0 48 2 0 20 0 1 8 2 0 14 0 2 15 11 8 9 28 0 64 1 0 10 chain 41088 chr2 243199373 + 122397458 122397953 L1PA6 6164 + 5667 6162 67778 495 chain 12798 chr2 243199373 + 122417998 122418148 L1PA4 6152 - 12 162 149057 6 1 0 137 0 1 6 chain 71565 chr2 243199373 + 122430524 122433481 L1PBa 3878 + 1723 3734 47672 187 0 2 161 311 0 76 1660 1025 48 17 13 302 0 3 175 2 1 18 chain 8007 chr2 243199373 + 122441515 122444787 MER61D 487 + 118 389 171012 86 3020 2 65 81 98 20 chain 33912 chr2 243199373 + 122448024 122448493 L1PA8 5853 - 0 466 77752 92 2 1 19 2 1 39 37 39 54 2 0 44 1 0 177 chain 3106 chr2 243199373 + 122448850 122448885 MSTB 430 - 383 418 222806 35 chain 12124 chr2 243199373 + 122460055 122460200 LTR8 732 + 572 717 151714 145 chain 24834 chr2 243199373 + 122487837 122488122 AluSp 311 + 11 297 105697 130 0 1 155 chain 118050 chr2 243199373 + 122501874 122503314 L1PA7 6471 - 1 1481 31783 11 5 0 173 2 5 477 6 8 168 0 8 245 10 35 50 0 7 293 chain 3180 chr2 243199373 + 122511523 122511559 MER34A 573 - 48 84 221356 36 chain 4723 chr2 243199373 + 122515141 122515197 MER75A 77 - 0 56 198256 56 chain 2839 chr2 243199373 + 122516827 122516861 MER104 178 - 24 58 228090 34 chain 13935 chr2 243199373 + 122528500 122528648 L1PA5 6144 - 6 154 144803 148 chain 20853 chr2 243199373 + 122538124 122538382 L1PA5 6144 + 5887 6144 124449 102 0 1 142 3 1 11 chain 31463 chr2 243199373 + 122539713 122540261 L1PB1 5432 - 10 525 81710 15 4 3 12 1 0 22 1 0 19 29 24 19 27 16 10 1 0 45 20 21 48 3 1 8 2 0 3 2 0 12 1 0 6 1 0 24 3 0 11 3 0 196 chain 22786 chr2 243199373 + 122558675 122558950 L1PA7 6471 - 1 271 116653 7 6 0 201 0 1 61 chain 28105 chr2 243199373 + 122569869 122570226 THE1A 353 + 0 353 92633 84 3 1 21 5 4 92 1 0 151 chain 123429 chr2 243199373 + 122570227 122571782 THE1A-int 1579 + 1 1579 29905 321 5 8 264 0 20 667 1 0 288 0 1 9 chain 27998 chr2 243199373 + 122571782 122572137 THE1A 353 + 0 353 93005 109 2 1 92 1 0 151 chain 16360 chr2 243199373 + 122574867 122575077 L1P4 1494 + 730 957 137309 57 7 22 133 0 2 13 chain 5438 chr2 243199373 + 122586479 122586546 MER63B 433 + 47 114 190635 67 chain 5366 chr2 243199373 + 122597710 122597772 MLT2B1 522 - 70 132 191360 62 chain 21938 chr2 243199373 + 122619058 122619422 THE1B 368 - 0 368 120469 48 15 14 66 15 13 13 0 1 4 1 0 4 8 13 20 1 0 98 10 13 61 chain 86709 chr2 243199373 + 122639819 122640795 L1PA4 6152 + 5176 6152 40877 976 chain 156860 chr2 243199373 + 122649670 122651368 SVA_F 1814 + 0 1814 23747 184 0 1 701 0 115 4 1 0 172 1 0 4 1 0 88 6 9 536 chain 6305 chr2 243199373 + 122708378 122708454 MLT1A 405 + 314 389 182751 20 1 0 55 chain 32096 chr2 243199373 + 122711853 122712355 L1PA13 3608 - 120 604 80699 22 2 1 11 8 6 5 2 0 47 2 0 10 6 3 28 0 3 17 1 0 62 2 0 113 1 0 24 0 1 10 14 4 101 0 2 14 chain 13920 chr2 243199373 + 122725592 122725779 AluY 311 + 16 297 144858 117 12 106 58 chain 4527 chr2 243199373 + 122732215 122732282 MER74A 558 - 40 113 200484 13 4 10 50 chain 554901 chr2 243199373 + 122770249 122776284 L1PA2 6032 - 0 6032 835 399 0 3 718 1 0 891 4 0 881 0 2 2563 0 1 352 4 0 222 chain 10154 chr2 243199373 + 122781979 122782196 L1PA15 4387 - 31 248 159831 26 10 5 10 10 24 21 17 14 39 1 0 12 4 0 20 2 1 45 chain 92788 chr2 243199373 + 122795142 122796198 L1PA5 6144 - 0 1055 38719 332 2 1 722 chain 108160 chr2 243199373 + 122796198 122797434 L1PA5 6144 + 3819 5063 34666 60 1 0 472 9 11 576 0 7 118 chain 544758 chr2 243199373 + 122803788 122809813 L1PA3long 6157 - 8 6148 2102 140 3 7 2734 0 2 369 19 0 1991 1 129 768 chain 33753 chr2 243199373 + 122810273 122810703 L1PA8 5853 - 6 431 78017 87 1 0 19 2 1 61 2 1 68 2 0 48 1 0 46 0 1 93 chain 15184 chr2 243199373 + 122816492 122816680 MER30 238 + 30 234 140816 77 4 20 107 chain 32433 chr2 243199373 + 122816789 122818513 MLT2A1 477 - 0 477 80148 18 2 1 44 1261 9 20 0 2 162 16 15 33 0 4 26 1 2 141 chain 265075 chr2 243199373 + 122843893 122847813 L1PB2 3958 - 120 3933 15438 63 2 1 21 2 0 69 1 2 65 1 0 72 1 0 93 4 0 9 5 4 65 8 0 9 0 2 51 18 16 53 0 1 318 2 1 384 7 6 54 0 2 95 1 0 23 5 9 252 28 11 90 1 2 13 8 12 102 10 0 16 7 6 72 1 0 4 0 2 35 0 1 35 9 3 12 12 0 3 8 0 80 2 0 6 23 16 273 0 1 47 7 0 52 2 1 446 6 4 62 0 4 121 1 3 96 20 0 147 30 38 49 30 27 27 1 0 11 2 0 30 2 0 30 10 5 13 11 6 18 14 10 4 1 0 27 chain 477945 chr2 243199373 + 122876531 122882759 L1PA7 6471 - 17 6063 7803 157 2 0 231 4 5 137 0 1 65 0 14 214 0 9 1327 324 0 165 7 11 60 0 93 129 0 1 521 0 1 447 1 0 232 7 0 116 0 2 475 1 0 286 0 2 60 6 5 83 0 1 306 27 46 18 0 1 449 9 7 96 0 7 266 chain 228761 chr2 243199373 + 122898478 122901167 L1PA5 6144 - 0 2654 17369 141 4 10 21 1 0 1178 41 0 296 0 1 41 0 1 489 0 1 289 2 0 186 chain 4715 chr2 243199373 + 122930426 122930496 MIR 256 + 55 121 198331 19 4 0 47 chain 10258 chr2 243199373 + 122957563 122957755 Tigger2b 204 - 14 202 159334 32 2 0 10 1 0 32 39 38 76 chain 42704 chr2 243199373 + 123003691 123004226 L1PA7 6471 + 5931 6469 65769 65 0 1 120 0 10 71 2 1 258 7 0 12 chain 82944 chr2 243199373 + 123010548 123011628 L1PBa 3878 + 1358 2422 42360 24 0 2 221 31 10 259 1 4 544 chain 93583 chr2 243199373 + 123022678 123023688 L1PA2 6032 - 0 1010 38482 1010 chain 22727 chr2 243199373 + 123035118 123035420 AluY 311 + 0 305 116941 44 12 4 84 0 1 96 11 21 55 chain 20818 chr2 243199373 + 123040492 123040725 L1PA4 6152 - 1 235 124543 95 0 1 138 chain 7299 chr2 243199373 + 123044667 123044764 L1MA4 2864 + 2599 2693 175451 71 4 1 22 chain 32690 chr2 243199373 + 123044902 123045312 MER1A 529 + 102 521 79704 50 0 10 305 1 0 54 chain 22498 chr2 243199373 + 123062064 123062415 THE1B 368 - 0 368 118034 116 10 13 8 3 0 32 8 9 17 9 7 111 0 15 6 0 3 31 chain 10148 chr2 243199373 + 123064098 123064281 L1PA15 4387 + 4199 4366 159859 7 4 0 10 2 1 50 6 3 46 2 0 9 9 4 27 1 0 10 chain 40732 chr2 243199373 + 123070514 123071020 L1PA5 6144 + 5621 6128 68267 284 0 1 76 5 0 6 8 13 127 chain 554769 chr2 243199373 + 123103543 123109890 L1PA2 6032 - 0 6032 850 2472 0 1 179 319 0 92 0 2 40 3 0 106 0 2 2796 0 2 340 chain 29310 chr2 243199373 + 123106204 123106513 AluYa5 310 - 0 309 87512 309 chain 107967 chr2 243199373 + 123128577 123130181 THE1D-int 1627 - 7 1610 34729 42 5 4 48 10 11 228 14 15 51 3 12 17 14 0 229 3 0 42 27 32 39 23 23 102 73 73 510 17 18 107 chain 59090 chr2 243199373 + 123137247 123137953 L1PA7 6471 - 5 708 53336 7 6 0 151 1 0 93 0 2 335 0 1 37 0 1 76 chain 7797 chr2 243199373 + 123137953 123138043 L1PA7 6471 + 5671 5761 172320 90 chain 23701 chr2 243199373 + 123141026 123141303 L1PA6 6164 - 11 288 112027 277 chain 4166 chr2 243199373 + 123164680 123164724 L1PA6 6164 + 6108 6152 205014 44 chain 24279 chr2 243199373 + 123198832 123199132 AluY 311 + 6 307 108781 137 3 0 7 0 3 54 7 8 92 chain 31250 chr2 243199373 + 123252443 123252873 L1P1 4361 + 2865 3274 82081 262 18 4 29 7 0 114 chain 40448 chr2 243199373 + 123271217 123271689 L1PA3long 6157 + 5684 6157 68667 318 3 7 143 3 0 5 chain 525803 chr2 243199373 + 123308321 123314382 L1PA5 6144 + 3 6131 4600 390 1 31 178 6 10 137 0 1 549 0 16 99 0 3 441 1 3 521 0 1 1966 0 4 103 3 4 127 0 1 40 1 0 669 0 4 177 0 1 517 0 1 33 2 1 100 chain 33168 chr2 243199373 + 123341742 123342155 L1PA6 6164 + 5745 6161 78956 270 2 3 133 0 2 8 chain 5604 chr2 243199373 + 123346675 123346746 MLT1B 390 + 45 116 189045 71 chain 29279 chr2 243199373 + 123378653 123378963 AluYa5 310 - 0 310 87651 310 chain 18578 chr2 243199373 + 123389140 123389377 AluSc 308 + 30 266 131289 93 2 1 142 chain 55384 chr2 243199373 + 123426173 123426801 L1PA2 6032 + 5413 6032 55468 21 8 0 502 0 1 84 2 0 11 chain 11772 chr2 243199373 + 123434013 123434228 MER30 238 + 1 238 153169 17 15 22 58 12 0 10 1 28 16 0 6 8 6 0 72 chain 6698 chr2 243199373 + 123452817 123452909 L1MA3 4352 + 3876 3967 179698 29 1 0 62 chain 63145 chr2 243199373 + 123453516 123454258 L1PA5 6144 - 1 741 51383 248 5 4 409 2 1 78 chain 6881 chr2 243199373 + 123459994 123460077 MER2 342 - 49 132 178337 83 chain 6417 chr2 243199373 + 123476718 123476795 MLT1E3 631 - 504 581 181893 77 chain 89504 chr2 243199373 + 123479788 123481165 L1PBa1 4058 + 2683 4039 39806 81 0 1 117 5 7 223 0 1 134 0 1 56 1 0 131 1 0 112 37 22 97 1 0 6 8 7 12 5 1 9 1 0 4 0 20 8 0 10 7 0 9 91 3 1 22 18 0 10 6 0 12 2 0 19 2 1 4 1 0 7 3 0 13 27 23 5 1 0 5 1 0 9 1 0 16 5 4 38 chain 22989 chr2 243199373 + 123518410 123518755 THE1B 368 + 0 368 115674 44 0 15 113 3 2 26 2 0 13 0 3 12 23 31 109 chain 8290 chr2 243199373 + 123527298 123527404 L1MB3 1562 + 798 904 169460 106 chain 432081 chr2 243199373 + 123530079 123535794 L1PA8 5853 + 111 5853 9266 191 39 26 124 11 20 53 3 0 124 0 1 177 17 18 18 0 26 58 0 1 334 0 3 261 0 5 36 0 1 100 0 1 42 1 0 4 21 1 282 12 0 377 0 1 8 8 9 55 6 5 151 7 8 245 11 10 492 11 29 160 0 1 648 1 0 39 4 15 137 0 1 460 0 1 140 2 0 67 1 0 5 0 2 268 0 1 89 1 2 77 1 3 34 5 4 48 2 0 68 2 1 14 12 11 36 2 1 19 2 1 92 chain 102655 chr2 243199373 + 123539244 123540446 L1PA5 6144 - 3 1215 36090 142 4 0 6 1 5 223 0 1 45 0 1 413 0 11 7 3 0 358 chain 69887 chr2 243199373 + 123540446 123541225 L1PA5 6144 + 4169 4948 48364 779 chain 27418 chr2 243199373 + 123541225 123541531 L1P1 4361 + 3868 4173 94911 282 1 0 23 chain 11867 chr2 243199373 + 123556519 123556699 Tigger2a 444 + 53 240 152757 23 1 2 26 3 0 5 3 6 23 0 6 96 chain 220709 chr2 243199373 + 123569123 123572457 L1PB1 5432 + 2360 5420 17836 126 26 23 321 9 0 78 0 1 370 155 0 442 1 0 642 7 19 8 0 1 94 12 13 111 8 13 190 5 4 204 0 10 73 1 0 11 103 0 20 1 0 13 16 11 9 2 0 45 14 13 12 4 3 40 1 0 10 30 18 16 27 22 24 1 0 21 1 0 13 1 0 16 chain 2829 chr2 243199373 + 123620737 123620767 PrimLTR79 487 + 379 409 228266 30 chain 3253 chr2 243199373 + 123630987 123631023 L1PA8 5853 + 5368 5404 219941 36 chain 32042 chr2 243199373 + 123631023 123631462 L1PA8 5853 + 5422 5853 80797 141 2 1 20 0 4 20 2 0 74 1 0 10 1 0 48 2 1 19 2 1 82 5 0 10 chain 45812 chr2 243199373 + 123663399 123664043 MER41B 635 - 0 634 62219 154 22 21 161 26 21 149 0 1 51 5 0 76 chain 69749 chr2 243199373 + 123721562 123722332 L1PA3long 6157 - 0 773 48495 259 1 0 497 0 4 13 chain 4586 chr2 243199373 + 123731425 123731501 L1P1 4361 + 4268 4341 199786 37 3 1 22 2 1 12 chain 16238 chr2 243199373 + 123731655 123731842 L1PA4 6152 - 1 190 137654 154 1 3 32 chain 27475 chr2 243199373 + 123754349 123754681 L1PA5 6144 - 9 341 94731 130 3 0 6 0 3 193 chain 8566 chr2 243199373 + 123755056 123755219 L1MA5A 2387 + 2155 2287 167929 29 1 0 33 3 0 13 28 0 38 2 3 16 chain 37282 chr2 243199373 + 123787689 123788105 L1PA4 6152 + 5736 6151 73111 266 1 0 149 chain 45698 chr2 243199373 + 123823910 123824404 L1PA2 6032 - 2 496 62312 494 chain 56923 chr2 243199373 + 123851679 123852448 MER4E1 777 - 7 777 54579 114 1 0 98 21 16 5 2 0 84 2 14 188 1 0 228 2 0 23 chain 70133 chr2 243199373 + 123870314 123871171 MER11D 897 - 2 897 48337 126 5 20 139 3 26 217 0 4 57 3 0 296 1 0 10 chain 80017 chr2 243199373 + 123898471 123899408 L1PA4 6152 - 0 936 43581 148 2 0 5 5 7 90 5 4 682 chain 28270 chr2 243199373 + 123900547 123900902 THE1A 353 + 0 353 92042 110 1 0 92 1 0 151 chain 50844 chr2 243199373 + 123954995 123955560 L1PA3long 6157 + 5590 6156 58401 198 0 1 367 chain 15691 chr2 243199373 + 123985626 123985810 L1PBa 3878 + 3291 3475 139300 184 chain 28748 chr2 243199373 + 123989147 123989464 AluYb8 318 - 6 318 90133 12 5 0 300 chain 24200 chr2 243199373 + 123999425 123999751 L1PA8 5853 - 408 710 109214 120 24 0 182 chain 9930 chr2 243199373 + 124000000 124000134 L1PA8 5853 + 5715 5847 160928 25 2 1 19 1 0 87 chain 18116 chr2 243199373 + 124015211 124015423 L1P1 4361 - 33 243 132550 23 1 0 155 1 0 32 chain 21180 chr2 243199373 + 124015423 124015664 L1PA3long 6157 + 5909 6156 123278 222 0 6 19 chain 32014 chr2 243199373 + 124032067 124032490 L1PA4 6152 + 5758 6141 80841 329 44 4 50 chain 198165 chr2 243199373 + 124065836 124069125 L1PA8 5853 + 3215 5853 19343 49 0 1 48 604 2 74 10 0 726 4 5 126 17 8 66 6 4 11 1 0 339 5 7 296 3 4 28 4 3 57 54 3 14 2 1 283 0 8 157 1 2 27 1 0 45 2 0 5 0 1 63 6 5 5 1 0 48 0 17 6 2 1 93 chain 54402 chr2 243199373 + 124065933 124066532 L1PA4 6152 + 5544 6143 56095 599 chain 93146 chr2 243199373 + 124070993 124072142 L1PA7 6471 + 5305 6461 38616 294 0 4 18 1 4 173 2 1 8 0 1 653 chain 13752 chr2 243199373 + 124136498 124136653 L1PA5 6144 - 5 161 145430 142 0 1 13 chain 202335 chr2 243199373 + 124140900 124143187 L1PA5 6144 + 3855 6143 19036 2029 0 1 258 chain 31987 chr2 243199373 + 124143970 124144453 L1PB 1623 + 120 594 80883 51 4 1 15 1 0 5 9 7 198 5 4 84 1 0 68 5 0 30 0 4 7 chain 172351 chr2 243199373 + 124151195 124153390 L1P3 4156 + 1944 4135 21778 140 8 0 548 23 0 212 0 29 614 3 0 324 0 1 21 0 1 20 22 23 230 2 0 7 2 1 8 0 1 11 chain 28935 chr2 243199373 + 124164285 124164587 AluYa5 310 - 8 310 89292 302 chain 9485 chr2 243199373 + 124169265 124169380 L1PA4 6152 + 6032 6152 163138 109 0 5 6 chain 81261 chr2 243199373 + 124180221 124181128 L1PA4 6152 - 3219 4127 43024 565 0 1 342 chain 279327 chr2 243199373 + 124181128 124184291 L1PA4 6152 + 2962 6136 14674 214 1 2 344 0 6 816 0 4 1788 chain 21495 chr2 243199373 + 124187144 124187421 L1PA7 6471 - 8 276 122162 38 10 1 229 chain 44064 chr2 243199373 + 124220134 124220627 L1PA4 6152 + 5659 6152 64142 493 chain 11033 chr2 243199373 + 124222508 124222724 MER30 238 + 0 236 156081 17 41 41 49 9 0 7 0 32 44 3 0 46 chain 201498 chr2 243199373 + 124228528 124231180 MER4-int 2692 + 1 2692 19108 10 1 0 26 22 20 42 1 0 9 1 0 7 0 3 5 1 0 590 6 5 60 0 13 42 0 2 150 0 2 5 8 5 397 0 20 39 1 0 20 0 2 118 0 5 86 1 0 424 6 9 7 2 0 34 0 3 115 0 1 24 1 0 391 chain 35148 chr2 243199373 + 124231188 124231641 MER4A1 472 + 0 456 75997 226 10 11 107 0 2 110 chain 32390 chr2 243199373 + 124253885 124254323 MLT2A1 477 - 0 477 80209 6 0 4 29 4 0 10 3 43 181 0 1 23 0 1 8 3 0 171 chain 230883 chr2 243199373 + 124254349 124257484 HERVL-int 5654 - 26 5646 17259 123 6 0 117 11 8 8 1 0 6 1 4 24 5 6 102 50 4 171 8 9 81 6 7 328 10 0 454 0 1 89 0 1 4 1 0 449 29 12 454 1 3 58 0 6 97 0 2576 121 4 0 8 0 4 129 24 0 51 3 4 101 chain 28375 chr2 243199373 + 124257527 124257939 MLT2A1 477 - 70 477 91681 6 2 0 8 2 0 8 4 0 181 0 1 16 20 18 37 1 5 127 chain 28954 chr2 243199373 + 124265047 124265430 MLT2A1 477 + 0 477 89205 87 3 4 51 0 1 18 7 11 183 0 89 13 1 0 20 chain 3433 chr2 243199373 + 124269240 124269285 L1PA2 6032 + 5985 6032 216520 31 0 2 14 chain 15568 chr2 243199373 + 124282860 124283090 L1PA8 5853 + 5621 5847 139671 58 1 0 14 7 5 46 1 0 16 1 0 23 1 2 62 chain 21862 chr2 243199373 + 124289228 124289599 THE1D 372 - 0 372 120776 31 2 1 42 3 0 25 0 1 39 22 23 14 35 38 158 chain 21879 chr2 243199373 + 124292285 124292638 THE1C 375 - 24 375 120718 134 30 24 11 0 3 44 26 27 108 chain 130199 chr2 243199373 + 124292867 124294313 L1PA3long 6157 - 205 1650 28046 823 0 1 145 2 0 476 chain 17892 chr2 243199373 + 124294313 124294516 L1PA3long 6157 + 5954 6157 133126 203 chain 162614 chr2 243199373 + 124298883 124301044 L1PA8 5853 + 3736 5853 22987 344 10 1 252 4 1 161 2 0 287 0 6 30 6 7 57 34 1 40 0 1 26 0 1 56 0 2 78 1 0 90 1 0 338 6 7 40 1 0 46 3 1 70 1 0 4 13 12 45 2 1 19 2 1 92 chain 19904 chr2 243199373 + 124305430 124305659 L1PA4 6152 - 1 231 127465 112 0 1 117 chain 3120 chr2 243199373 + 124305659 124305692 L1PA4 6152 + 5866 5899 222539 33 chain 125172 chr2 243199373 + 124309761 124311659 L1PA8 5853 - 0 1593 29332 93 1 0 18 3 2 48 1 0 13 1 0 70 10 8 37 1 0 554 307 0 297 2 10 239 0 1 99 2 1 95 0 1 7 chain 25143 chr2 243199373 + 124318570 124318976 L1PA10 4194 - 33 702 104045 10 2 1 33 3 0 41 2 0 41 51 320 223 chain 21898 chr2 243199373 + 124344032 124344284 L1PA4 6152 + 5871 6125 120628 5 0 2 247 chain 541382 chr2 243199373 + 124386300 124392315 L1PA3long 6157 + 8 6157 2609 144 0 1 624 1 129 713 1 0 977 0 3 610 0 1 2939 0 2 6 chain 15767 chr2 243199373 + 124417226 124417413 HERVH-int 3825 - 0 188 139068 180 0 1 7 chain 53243 chr2 243199373 + 124419863 124420657 MER4E1 777 + 0 769 56863 24 0 1 128 1 0 4 21 0 16 0 1 4 1 0 15 1 0 51 1 0 4 4 5 72 6 5 58 5 0 28 3 0 121 1 7 96 21 22 4 1 0 103 chain 42316 chr2 243199373 + 124439218 124439746 LTR6B 557 + 0 557 66249 39 1 27 293 0 1 121 18 20 56 chain 143733 chr2 243199373 + 124441166 124443947 LTR12C 1709 + 0 1709 25529 485 1 0 89 1 0 76 755 0 187 1 0 17 320 4 253 1 0 6 2 0 107 0 4 100 0 1 380 chain 9944 chr2 243199373 + 124441818 124441996 LTR12C 1709 + 769 946 79720 68 1 0 109 chain 10817 chr2 243199373 + 124441996 124442216 LTR12C 1709 + 668 769 72730 93 119 0 8 chain 1724 chr2 243199373 + 124442089 124442121 LTR12C 1709 + 1080 1112 148082 32 chain 3464 chr2 243199373 + 124442146 124442208 LTR12C 1709 + 1018 1080 79720 62 chain 8411 chr2 243199373 + 124442216 124442421 LTR12C 1709 + 650 854 66826 187 1 0 17 chain 7474 chr2 243199373 + 124442421 124442573 LTR12C 1709 + 895 1088 72730 82 0 41 70 chain 12104 chr2 243199373 + 124442778 124443073 LTR12C 1709 + 895 1112 66826 117 78 0 100 chain 3073 chr2 243199373 + 124442913 124442973 LTR12C 1709 + 1118 1178 102929 60 chain 1812 chr2 243199373 + 124443073 124443098 LTR12C 1709 + 674 699 95171 25 chain 38001 chr2 243199373 + 124446575 124447686 HERVS71-int 4705 + 3281 4342 72131 18 17 11 9 1 0 5 1 0 27 28 16 7 0 6 16 1 0 18 7 5 51 25 20 6 1 0 29 4 3 30 5 2 51 6 4 16 1 0 35 1 0 13 3 1 5 1 0 12 24 18 29 6 4 7 2 0 4 1 0 26 12 8 20 6 4 6 1 0 33 4 1 22 1 0 5 21 18 17 20 23 23 2 1 36 2 1 11 3 1 10 27 22 46 1 0 6 16 14 11 2 0 17 2 0 8 2 0 21 119 81 19 0 62 10 chain 42636 chr2 243199373 + 124448572 124449097 LTR6B 557 + 0 557 65854 39 4 31 131 0 1 152 0 1 92 5 6 42 0 1 4 0 1 56 chain 107531 chr2 243199373 + 124462434 124463598 L1PA2 6032 - 476 1640 34838 1164 chain 45474 chr2 243199373 + 124463598 124464088 L1PA2 6032 + 5539 6029 62521 490 chain 19056 chr2 243199373 + 124475956 124476201 AluSg7 307 - 6 246 129953 12 6 0 157 0 1 70 chain 27464 chr2 243199373 + 124513327 124513628 L1PA2 6032 - 0 302 94764 291 0 1 10 chain 49981 chr2 243199373 + 124513630 124514184 L1PA5 6144 + 5586 6140 59029 554 chain 20649 chr2 243199373 + 124517234 124517463 L1PA4 6152 + 5614 5843 125135 229 chain 42645 chr2 243199373 + 124533128 124533729 L1PA8 5853 - 0 595 65848 89 9 8 15 2 1 43 1 0 5 12 31 51 2 0 45 2 1 182 26 7 117 chain 506509 chr2 243199373 + 124556175 124562282 L1PA6 6164 - 2 6164 6431 6 2 0 137 11 13 39 0 8 362 0 1 129 1 0 763 0 1 291 0 28 18 0 4 20 0 1 319 6 8 824 0 1 300 2 0 556 1 2 171 0 6 703 1 0 15 8 13 913 2 1 96 0 1 306 0 1 105 chain 77717 chr2 243199373 + 124563382 124564383 MER11A 1151 - 0 1151 44650 165 2 3 61 0 9 54 5 38 4 0 1 69 0 4 53 12 17 135 0 1 93 0 1 149 4 0 140 0 99 55 chain 2962 chr2 243199373 + 124584016 124584052 LTR12C 1709 - 836 872 225853 36 chain 4037 chr2 243199373 + 124584097 124584237 LTR12C 1709 - 550 778 206825 27 1 130 15 65 24 32 chain 41525 chr2 243199373 + 124610162 124610662 MER9a1 513 + 0 504 67251 156 0 3 86 0 1 258 chain 279070 chr2 243199373 + 124613709 124617727 L1PA10 4194 + 175 4161 14689 10 2 0 7 2 1 6 3 0 11 30 22 9 5 4 5 1 0 14 102 71 21 71 62 65 3 1 392 27 15 45 5 6 70 7 8 239 6 5 198 0 2 393 2 3 24 0 4 150 2 4 474 1 2 111 0 5 36 9 13 63 1 0 8 0 3 25 8 34 143 1 0 813 2 1 31 0 1 204 5 0 107 3 0 34 2 1 10 chain 3402 chr2 243199373 + 124624646 124624682 LTR26B 539 - 495 531 217049 36 chain 18675 chr2 243199373 + 124626903 124627147 7SK 245 - 5 245 131008 120 1 0 82 0 1 22 4 0 15 chain 13273 chr2 243199373 + 124633490 124633659 L1PA6 6164 - 3 170 147201 7 2 0 160 chain 78374 chr2 243199373 + 124647349 124648427 MER11B 1079 + 0 1079 44335 220 0 5 129 3 6 65 13 12 297 27 17 16 0 2 51 5 6 46 0 1 15 0 1 160 2 1 29 chain 51643 chr2 243199373 + 124662470 124663062 L1PA4 6152 - 11 602 57866 243 1 0 348 chain 4675 chr2 243199373 + 124673127 124673189 MER58B 340 - 107 188 198814 12 0 19 50 chain 18500 chr2 243199373 + 124705413 124705757 THE1D 372 - 0 372 131497 122 39 40 23 13 20 4 0 1 12 33 52 98 chain 42801 chr2 243199373 + 124734385 124734935 MLT2A2 560 - 0 560 65657 138 12 23 72 1 0 327 chain 11348 chr2 243199373 + 124749308 124749465 L1PA8A 6298 + 6133 6290 154904 45 11 11 101 chain 15724 chr2 243199373 + 124753796 124754181 L1PB1 5432 - 20 358 139200 8 1 0 13 1 0 5 0 1 4 2 1 10 1 0 19 7 5 14 9 6 28 10 0 17 1 0 45 18 16 52 2 0 7 9 5 12 8 6 23 7 0 8 15 4 29 chain 32216 chr2 243199373 + 124756867 124757280 MER57A1 433 - 14 433 80494 138 0 1 171 6 5 4 0 1 14 0 5 80 chain 30103 chr2 243199373 + 124793487 124793800 AluYb8 318 - 5 318 84480 313 chain 3313 chr2 243199373 + 124852569 124852607 L1PA8 5853 - 466 504 218718 38 chain 35525 chr2 243199373 + 124852607 124853087 L1PA8 5853 + 5379 5853 75512 35 1 2 148 1 0 44 2 0 70 2 1 9 2 1 55 1 0 16 2 1 92 chain 3152 chr2 243199373 + 124856161 124856202 MIR 256 - 112 150 221890 5 3 0 33 chain 520224 chr2 243199373 + 124880526 124886642 L1PA5 6144 + 2 6138 5132 123 1 15 13 6 18 240 3 0 758 9 0 264 1 0 661 0 1 1081 1 0 103 1 0 61 1 9 153 1 0 710 0 1 645 6 7 5 1 0 424 1 0 192 1 2 650 chain 556665 chr2 243199373 + 124897357 124903384 L1PA2 6032 + 5 6032 651 2632 0 1 423 7 6 2965 chain 3431 chr2 243199373 + 124911549 124911645 MLT1A0 366 - 259 357 216556 25 34 35 17 2 0 5 0 3 13 chain 57201 chr2 243199373 + 124973972 124974603 L1PA4 6152 - 5 636 54404 631 chain 9738 chr2 243199373 + 124975737 124975855 MER85 139 - 4 132 161898 36 0 10 82 chain 2934 chr2 243199373 + 124985120 124985154 LTR37B 484 - 0 34 226438 34 chain 52770 chr2 243199373 + 125006642 125007375 MER4E 760 + 6 753 57151 17 0 1 124 0 10 8 1 0 6 6 0 33 15 17 64 1 5 71 1 3 37 0 5 127 4 0 93 9 10 116 chain 73318 chr2 243199373 + 125016450 125017288 L1PA4 6152 - 15 853 46833 838 chain 82121 chr2 243199373 + 125017288 125018238 L1PA4 6152 + 4334 5284 42716 295 1 0 217 8 9 429 chain 122091 chr2 243199373 + 125020230 125021627 L1PA5 6144 - 0 1401 30351 11 1 3 534 0 1 241 3 1 56 0 3 370 0 1 170 1 0 10 chain 5060 chr2 243199373 + 125032839 125032899 LTR75_1 542 - 481 541 194537 60 chain 52337 chr2 243199373 + 125055852 125056523 PABL_B 668 - 0 668 57408 396 0 1 31 1 0 171 1 5 29 8 1 34 chain 24897 chr2 243199373 + 125070160 125070436 AluYk4 311 - 25 301 105371 276 chain 3758 chr2 243199373 + 125080575 125080622 MLT1A0 366 - 46 93 210992 47 chain 20719 chr2 243199373 + 125084987 125085380 MER4B 649 + 65 500 124892 43 14 22 68 13 36 110 1 16 33 62 58 49 chain 4204 chr2 243199373 + 125089687 125089740 LOR1-int 1871 - 628 681 204493 53 chain 180617 chr2 243199373 + 125093963 125096018 L1PA4 6152 - 11 2076 20932 450 2 0 5 0 2 329 0 3 141 2 1 607 11 19 508 chain 550647 chr2 243199373 + 125113883 125119911 L1PA2 6032 - 0 6030 1355 299 0 1 476 1 2 163 1 0 4 0 1 853 0 4 2135 7 4 1834 1 0 254 chain 23353 chr2 243199373 + 125124849 125125152 THE1C 375 - 43 375 113912 137 6 34 99 0 1 61 chain 28195 chr2 243199373 + 125144939 125145398 LTR7B 505 - 2 505 92325 61 2 1 48 4 5 26 1 0 39 0 2 11 0 88 27 66 11 69 0 10 105 chain 13113 chr2 243199373 + 125161294 125161657 THE1B 368 - 1 367 147797 125 182 185 56 chain 550158 chr2 243199373 + 125165447 125171459 L1PA2 6032 + 1 6020 1428 254 2 1 494 2 0 533 0 9 798 7 4 136 1 3 1097 0 2 2688 chain 4749 chr2 243199373 + 125215289 125215343 L1PA6 6164 - 7 61 197925 54 chain 46992 chr2 243199373 + 125215343 125216234 L1PB1 5432 + 4668 5420 61220 432 119 12 17 6 5 13 1 0 11 4 0 9 2 0 53 25 23 26 104 85 16 1 0 20 2 1 13 1 0 16 chain 64201 chr2 243199373 + 125218558 125219259 L1PA3long 6157 + 5451 6152 50918 701 chain 119722 chr2 243199373 + 125227816 125229428 L1PA11 4918 - 414 2024 31141 16 1 0 16 2 0 65 17 14 42 1 0 11 0 1 14 1 0 486 3 0 311 15 19 108 0 1 47 15 16 40 0 1 125 0 1 276 chain 5326 chr2 243199373 + 125231521 125231601 MADE1 96 + 0 96 191764 44 4 20 32 chain 15708 chr2 243199373 + 125292331 125292563 MER41B 635 - 405 635 139241 17 5 12 74 11 0 96 1 3 28 chain 20685 chr2 243199373 + 125335604 125335925 AluSq10 312 + 0 301 125020 109 1 0 19 19 0 45 32 0 9 6 38 81 chain 557293 chr2 243199373 + 125350716 125356745 L1PA2 6032 - 5 6030 579 3933 7 4 502 1 0 1586 chain 39540 chr2 243199373 + 125412571 125413114 L1PA8 5853 - 4 539 69972 89 2 1 18 2 1 44 20 18 68 2 0 48 2 1 212 1 0 35 chain 43659 chr2 243199373 + 125419438 125419975 L1PA7 6471 - 4 569 64615 7 8 0 40 0 13 186 0 23 296 chain 6689 chr2 243199373 + 125423594 125423749 MER4D 903 - 21 172 179765 10 1 0 22 1 2 13 53 49 55 chain 71315 chr2 243199373 + 125434580 125435440 LTR12 884 - 0 884 47786 484 0 22 174 0 2 202 chain 9195 chr2 243199373 + 125558421 125558524 MER4E 760 - 48 151 164580 103 chain 22875 chr2 243199373 + 125600502 125600959 L1PB1 5432 - 9 451 116211 5 1 0 14 1 0 13 1 0 21 2 1 22 66 51 16 1 0 44 1 0 15 2 1 52 2 0 8 31 18 4 1 0 22 0 23 112 chain 76271 chr2 243199373 + 125602487 125603542 L1PBa 3878 - 130 1166 45326 10 8 0 221 1 0 4 0 1 34 25 23 224 1 4 6 11 0 488 2 1 20 chain 43912 chr2 243199373 + 125613302 125614182 L1PB1 5432 - 2 722 64320 8 2 0 18 1 0 12 1 0 22 1 0 24 2 0 15 1 0 4 2 0 19 24 12 16 1 0 44 1 0 15 2 1 52 2 0 6 9 5 10 6 5 6 1 0 13 169 40 99 1 0 4 5 8 262 chain 159491 chr2 243199373 + 125615569 125617644 L1PA5 6144 + 3919 6142 23403 431 1 3 100 0 3 20 0 2 67 227 368 1068 0 5 14 5 0 142 chain 5439 chr2 243199373 + 125621998 125622073 L1MA5A 2387 - 81 156 190620 11 1 0 35 0 1 28 chain 5075 chr2 243199373 + 125681275 125681337 MLT1E1A 663 + 601 663 194358 62 chain 6289 chr2 243199373 + 125685398 125685685 LTR12 884 + 139 391 182889 24 22 27 15 17 0 24 2 18 23 86 68 15 24 5 20 2 0 13 chain 18339 chr2 243199373 + 125707070 125707278 L1PA5 6144 - 0 208 131959 208 chain 28370 chr2 243199373 + 125732154 125732550 LTR7 482 - 6 482 91698 43 13 14 95 0 9 9 0 1 7 0 31 152 8 46 69 chain 113135 chr2 243199373 + 125744168 125745524 LTR12C 1709 - 0 1709 33341 481 0 4 49 0 3 54 4 2 5 1 0 37 0 321 316 8 9 161 1 0 113 0 28 126 chain 7711 chr2 243199373 + 125752673 125752836 LTR29 598 + 45 232 172858 37 8 6 8 1 0 4 1 0 5 10 14 52 9 34 14 1 0 13 chain 48816 chr2 243199373 + 125781785 125782369 LTR14C 587 - 0 587 59866 105 15 16 452 0 2 12 chain 393396 chr2 243199373 + 125784217 125788752 L1PA5 6144 - 0 4557 10343 1516 2 0 141 0 17 381 0 25 328 0 4 222 4 1 64 4 5 273 4 3 327 8 6 473 17 0 771 chain 7940 chr2 243199373 + 125795202 125795517 LTR12D 1347 + 651 1000 171382 47 197 231 71 chain 99071 chr2 243199373 + 125836941 125838061 L1PA5 6144 - 10 1131 36944 1021 0 1 99 chain 114270 chr2 243199373 + 125838061 125839379 L1PA5 6144 + 3715 5024 33008 660 0 1 246 10 0 402 chain 22852 chr2 243199373 + 125859815 125860094 L1PA6 6164 + 5880 6162 116327 75 0 3 44 2 0 6 0 1 9 0 1 143 chain 381858 chr2 243199373 + 125877839 125883467 L1PB1 5432 - 12 5311 10704 16 1 0 13 1 0 21 1 0 24 2 0 11 15 12 15 25 12 16 1 0 42 20 18 53 2 0 6 8 4 10 1 0 12 7 6 12 18 14 188 19 26 83 0 9 176 11 8 233 1 0 74 4 5 149 0 1 240 1 2 119 2 1 51 1 2 10 7 0 147 0 1 25 17 0 7 2 21 135 0 4 124 328 0 97 31 30 127 1 0 163 17 18 9 0 1 319 2 0 5 5 0 20 0 3 341 0 1 64 9 7 307 1 2 113 0 1 174 4 12 34 0 9 329 0 1 108 0 1 210 1 0 171 0 5 301 0 1 4 1 0 153 chain 1243 chr2 243199373 + 125884681 125884904 Tigger1 2417 + 1031 1257 115515 5 0 3 218 chain 28612 chr2 243199373 + 125885478 125885801 L1P1 4361 + 3995 4318 90684 156 1 0 129 0 2 23 1 0 13 chain 1204 chr2 243199373 + 125888596 125888812 Tigger1 2417 + 2145 2368 115515 68 17 19 12 5 8 77 0 2 37 chain 95681 chr2 243199373 + 125890415 125891636 L1PA11 4918 + 3033 4260 37904 177 0 1 24 0 1 190 0 1 25 0 6 208 1 0 377 3 1 216 chain 3443 chr2 243199373 + 125907068 125907105 MER66B 489 - 155 192 216329 37 chain 79353 chr2 243199373 + 125907160 125908122 L1PA7 6471 - 6 966 43886 6 4 0 41 2 1 795 1 4 113 chain 100544 chr2 243199373 + 125916814 125918143 L1PA13 3608 + 1618 2944 36618 279 1 0 438 26 23 422 0 1 163 chain 12801 chr2 243199373 + 125931535 125931711 PABL_A 660 - 0 175 149052 91 10 9 75 chain 50606 chr2 243199373 + 125931711 125932292 LTR10C 591 + 0 584 58574 185 0 1 324 0 2 72 chain 24439 chr2 243199373 + 125992937 125993478 L1PA14 3548 - 92 634 107869 41 1 0 15 6 5 8 1 0 18 42 37 110 2 1 84 33 47 83 58 57 11 8 6 15 1 0 4 chain 14724 chr2 243199373 + 126000027 126000213 MER44B 551 + 281 468 142186 178 0 1 8 chain 20498 chr2 243199373 + 126008458 126008695 L1PA5 6144 - 1 238 125635 237 chain 34604 chr2 243199373 + 126010149 126010655 MLT2A2 560 - 0 560 76752 8 0 4 76 8 14 45 0 11 63 5 37 78 27 28 196 chain 64384 chr2 243199373 + 126016312 126017030 L1PA2 6032 - 0 724 50849 267 4 9 65 0 1 382 chain 28740 chr2 243199373 + 126017789 126018116 L1PA3long 6157 + 5815 6150 90172 197 0 7 95 0 1 35 chain 45928 chr2 243199373 + 126020211 126020763 L1PA7 6471 - 6 556 62103 6 3 0 138 0 1 405 chain 28553 chr2 243199373 + 126028045 126028442 L1PA8 5853 + 5463 5853 90943 57 0 4 38 1 0 48 2 0 54 4 0 14 12 10 52 2 1 19 1 0 93 chain 103044 chr2 243199373 + 126034152 126035373 SVA_B 1603 - 0 1603 35978 104 3 1 186 0 2 223 0 241 284 1 117 375 14 1 17 0 38 14 chain 66543 chr2 243199373 + 126039056 126039865 L1PA7 6471 + 5646 6465 49849 64 1 0 81 1 0 120 0 1 224 0 1 89 0 10 229 chain 34721 chr2 243199373 + 126060447 126060832 L1PA3long 6157 - 1377 1762 76456 385 chain 124402 chr2 243199373 + 126060832 126062204 L1PA3long 6157 + 4778 6157 29574 1156 0 7 216 chain 77775 chr2 243199373 + 126077593 126078457 L1PA4 6152 - 1 872 44627 138 0 7 726 chain 37365 chr2 243199373 + 126107692 126108192 L1PA8 5853 - 7 520 73011 86 5 23 47 17 15 67 2 0 46 1 0 229 chain 10806 chr2 243199373 + 126108206 126108343 L1PA8 5853 + 5140 5277 156959 137 chain 19033 chr2 243199373 + 126114406 126114696 L1PA8 5853 + 5569 5849 130023 39 2 0 70 12 10 56 1 0 15 3 2 12 7 3 73 chain 461897 chr2 243199373 + 126115547 126121035 L1PA3long 6157 + 620 6154 8335 20 5 19 48 0 8 108 18 19 39 27 0 331 1 0 6 2 3 16 1 0 222 2 3 1727 5 4 494 0 1 1243 0 11 750 9 46 306 0 1 104 0 1 4 chain 23903 chr2 243199373 + 126131483 126131758 AluYf5 307 + 33 306 110899 268 2 0 5 chain 177501 chr2 243199373 + 126147504 126149609 L1PA6 6164 - 2 2103 21207 8 2 0 228 8 9 519 0 1 79 4 0 1257 chain 11428 chr2 243199373 + 126153240 126153380 MER85 139 - 0 139 154572 29 1 0 110 chain 11325 chr2 243199373 + 126163202 126163499 L1MA4 2864 + 1595 1886 154981 71 117 113 13 9 8 68 1 0 18 chain 87382 chr2 243199373 + 126174760 126175704 L1PA2 6032 - 380 1325 40621 479 0 1 465 chain 34927 chr2 243199373 + 126175704 126176080 L1PA2 6032 + 5647 6023 76299 376 chain 3689 chr2 243199373 + 126177656 126177696 L1PA8 5853 + 5762 5802 212102 40 chain 7640 chr2 243199373 + 126178725 126178829 L1PA8 5853 + 5744 5847 173281 16 3 2 85 chain 148997 chr2 243199373 + 126179640 126181349 LTR12C 1709 + 0 1709 24753 271 2 0 566 1 0 274 1 0 6 2 0 107 0 4 146 0 2 333 chain 40126 chr2 243199373 + 126230174 126230605 L1PA2 6032 + 5600 6032 69143 95 0 1 336 chain 25944 chr2 243199373 + 126234949 126235316 THE1B 368 + 0 368 100236 42 11 12 120 10 9 8 0 2 101 1 0 74 chain 3598 chr2 243199373 + 126236561 126236600 LTR12C 1709 - 814 853 213687 39 chain 147559 chr2 243199373 + 126240225 126242605 L1PB1 5432 - 25 2258 24951 8 18 0 8 2 1 17 51 46 19 26 14 13 2 1 43 1 0 16 2 1 50 19 13 11 5 4 27 83 0 10 7 6 173 5 0 39 7 1 76 1 0 40 0 8 51 4 6 21 4 6 52 13 5 99 0 5 254 6 1 235 0 1 4 35 25 11 3 0 30 1 0 229 6 7 93 0 1 62 0 3 5 3 0 338 4 6 38 chain 60363 chr2 243199373 + 126248376 126249375 L1PB1 5432 - 28 1025 52650 12 1 0 22 1 0 26 25 20 16 20 8 4 1 0 14 0 12 34 1 0 13 5 4 41 28 22 12 7 6 4 1 0 17 16 14 19 0 1 216 2 0 59 3 11 26 6 9 54 5 4 81 0 2 5 0 3 134 0 4 68 chain 22523 chr2 243199373 + 126255301 126255545 L1PA4 6152 - 16 260 117921 244 chain 104624 chr2 243199373 + 126263263 126264480 L1PA5 6144 - 4 1231 35589 14 1 0 33 0 11 191 1 0 596 0 1 381 chain 3754 chr2 243199373 + 126284181 126284226 MADE1 96 - 50 95 211079 45 chain 29599 chr2 243199373 + 126348512 126348917 L1PA8 5853 + 5450 5847 86213 114 2 1 39 5 4 70 2 1 11 3 0 50 2 1 22 1 0 84 chain 7617 chr2 243199373 + 126360138 126360233 MER2 342 - 127 222 173430 95 chain 15106 chr2 243199373 + 126373445 126373789 L1PB1 5432 + 5114 5427 141011 24 8 6 14 5 1 9 2 0 42 16 15 11 1 0 45 1 0 15 1 0 6 15 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 364237 chr2 243199373 + 126380531 126385120 L1PA7 6471 + 1830 6461 11250 75 1 7 123 8 7 63 7 8 230 2 3 173 0 2 45 0 1 72 0 3 6 1 0 28 0 19 104 0 25 168 0 9 496 1 0 764 8 7 117 0 1 188 1 0 4 0 1 38 0 1 1003 1 0 62 5 4 25 0 3 105 0 1 229 26 1 247 12 25 7 13 0 131 chain 36789 chr2 243199373 + 126388934 126389590 LTR12_ 688 + 0 688 73809 90 9 25 133 60 59 224 2 17 32 83 85 23 chain 4023 chr2 243199373 + 126394225 126394272 L1MB3 1562 - 848 895 207037 47 chain 22635 chr2 243199373 + 126397868 126398141 AluSp 311 + 10 287 117398 82 0 4 191 chain 42733 chr2 243199373 + 126418014 126418579 MLT2A2 560 + 0 544 65741 32 21 0 303 5 6 157 1 0 46 chain 2831 chr2 243199373 + 126422764 126422796 LTR12_ 688 - 508 540 221212 32 chain 3310 chr2 243199373 + 126422796 126422847 LTR12_ 688 - 492 542 218786 26 4 3 21 chain 374817 chr2 243199373 + 126431737 126437467 L1PB1 5432 - 19 5374 10928 9 1 0 13 1 0 21 1 0 24 407 65 43 2 1 16 2 1 48 32 25 13 7 6 14 1 0 11 3 0 39 3 14 47 16 8 12 0 5 8 4 0 349 3 0 90 0 4 29 42 48 153 4 5 94 2 1 232 4 3 70 0 1 115 7 13 23 4 6 110 6 5 730 10 13 33 2 1 11 12 0 310 0 2 20 23 0 77 0 1 194 1 0 4 0 1 69 0 1 22 5 4 98 24 28 398 3 13 171 36 26 504 1 0 5 1 2 238 14 16 77 5 0 14 5 6 138 10 4 330 chain 35780 chr2 243199373 + 126468166 126468632 LTR7C 471 + 0 471 75162 206 11 15 228 7 8 14 chain 53836 chr2 243199373 + 126486154 126486983 LTR12 884 + 0 884 56463 119 0 25 126 0 1 5 2 1 44 41 0 18 2 3 36 2 0 247 10 13 10 40 7 72 4 106 51 chain 45089 chr2 243199373 + 126510104 126510580 L1HS 6032 + 5556 6032 62951 476 chain 174653 chr2 243199373 + 126524990 126526996 L1PA5 6144 + 4138 6144 21520 349 0 1 889 1 0 604 17 17 146 chain 10718 chr2 243199373 + 126529420 126529547 L1PA4 6152 + 6018 6143 157332 71 2 0 54 chain 549166 chr2 243199373 + 126583113 126589251 L1PA3long 6157 + 6 6157 1558 325 0 3 3553 0 1 109 0 3 1110 0 1 94 0 4 521 0 1 426 chain 5557 chr2 243199373 + 126593653 126593796 L1MDa 1598 - 388 543 189499 16 15 18 22 17 25 34 11 12 28 chain 3550 chr2 243199373 + 126612911 126612990 MADE1 96 - 0 96 214537 19 7 8 10 12 28 31 chain 116781 chr2 243199373 + 126634090 126635438 L1PA5 6144 - 0 1349 32194 48 0 1 111 0 1 961 1 0 227 chain 20706 chr2 243199373 + 126635438 126635674 L1PA5 6144 + 4541 4776 124627 81 1 0 154 chain 31153 chr2 243199373 + 126642560 126642981 MLT2A1 477 - 0 477 82252 50 0 44 8 0 4 137 0 2 58 13 17 14 0 1 109 0 1 32 chain 435974 chr2 243199373 + 126642981 126648541 HERVL-int 5654 - 0 5642 9167 223 0 1 11 1 6 105 1 8 200 5 7 187 0 3 813 0 1 15 0 1 111 1 0 4 0 1 282 1 6 51 0 7 13 12 0 385 2 3 212 0 6 111 0 1 4 8 20 424 1 4 728 5 6 212 3 4 270 0 1 4 0 10 153 1 2 107 10 11 83 1 44 143 9 10 487 17 0 7 7 5 81 1 0 48 chain 8443 chr2 243199373 + 126649018 126649118 MLT2A1 477 + 302 402 168606 100 chain 31934 chr2 243199373 + 126652955 126653374 MLT2A1 477 - 53 477 80960 251 2 6 24 0 1 142 chain 14760 chr2 243199373 + 126655030 126655193 L1PA2 6032 + 5870 6032 142065 156 1 0 6 chain 7060 chr2 243199373 + 126673034 126673179 L1M4c 1769 - 50 190 177031 40 46 41 59 chain 52517 chr2 243199373 + 126691168 126691764 L1P1 4361 + 2905 3504 57289 22 0 3 574 chain 30190 chr2 243199373 + 126726689 126727091 L1PA8A 6298 + 5893 6290 84226 55 7 5 130 1 0 5 0 1 61 0 1 28 1 0 34 5 2 75 chain 25455 chr2 243199373 + 126734547 126734901 L1PA8 5853 + 5505 5853 102433 95 10 8 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 67821 chr2 243199373 + 126759934 126760883 MER11C 1089 + 0 1076 49315 55 0 91 74 0 5 34 0 3 102 0 5 202 31 32 104 0 1 70 0 19 33 2 1 6 0 2 38 0 1 16 4 5 21 1 0 123 1 2 10 6 5 16 chain 25990 chr2 243199373 + 126763424 126763726 AluYk4 311 - 4 302 100054 13 4 0 285 chain 39139 chr2 243199373 + 126773231 126773749 L1PA7 6471 - 7 529 70556 151 3 0 5 10 12 145 1 6 203 chain 4244 chr2 243199373 + 126773749 126773800 L1P3 4156 + 3031 3082 203949 51 chain 72509 chr2 243199373 + 126809200 126810283 MER11A 1151 - 8 1151 47263 148 15 17 57 0 1 37 18 0 20 9 16 11 28 4 95 3 4 44 4 6 144 0 1 92 5 6 49 12 13 84 4 0 66 1 0 29 0 91 108 chain 21385 chr2 243199373 + 126822204 126822516 THE1B 368 + 0 309 122570 47 0 9 8 16 7 101 7 6 22 2 0 109 chain 4095 chr2 243199373 + 126829017 126829063 MLT2A2 560 + 514 560 206016 46 chain 4504 chr2 243199373 + 126833318 126833374 HERVL-int 5654 + 3906 3963 200741 12 0 1 44 chain 326905 chr2 243199373 + 126844032 126847803 L1PA5 6144 + 2367 6144 12308 142 0 1 1180 0 1 653 0 4 410 0 1 357 1 0 1028 chain 50728 chr2 243199373 + 126852182 126852773 L1PA7 6471 + 5863 6455 58484 294 1 2 296 chain 79240 chr2 243199373 + 126853739 126855502 HERVL-int 5654 + 58 5654 43936 323 8 9 254 5 6 22 0 1 43 8 0 66 613 4444 27 0 1 24 0 3 12 5 8 353 chain 69969 chr2 243199373 + 126859701 126860467 L1PA3long 6157 - 0 767 48324 159 0 1 607 chain 91523 chr2 243199373 + 126860467 126861475 L1P1 4361 + 1918 2928 39123 204 0 2 804 chain 36585 chr2 243199373 + 126876456 126876859 L1P1 4361 - 191 592 74118 20 1 0 377 1 0 4 chain 513384 chr2 243199373 + 126918067 126927073 L1PA7 6471 + 0 6459 5845 136 0 6 158 4 5 106 0 10 384 0 1 418 0 1 4 1 0 838 43 32 110 0 1 424 1 2 71 7 8 488 0 1 31 0 1 286 2 1 24 6 7 111 0 9 102 0 5 34 1 2 500 0 2 84 0 1 191 11 8 345 1 2 135 1 0 134 0 1 87 308 0 131 2 1 175 0 2 57 2321 0 27 3 6 629 0 50 74 chain 74144 chr2 243199373 + 126924029 126924847 L1PA3long 6157 - 1472 2291 46398 740 0 1 78 chain 131952 chr2 243199373 + 126924847 126926314 L1PA3long 6157 + 4684 6152 27644 1139 0 1 328 chain 562950 chr2 243199373 + 126935625 126941641 L1HS 6032 - 1 6032 268 1306 0 10 1254 0 1 1736 0 5 983 1 0 736 chain 312423 chr2 243199373 + 126953196 126956781 L1P1 4361 + 1 3595 12917 608 0 4 1118 1 6 385 0 2 183 1 0 851 2 1 436 chain 102247 chr2 243199373 + 126964158 126965324 L1PA5 6144 - 0 1165 36204 769 1 0 353 5 4 32 0 1 6 chain 49422 chr2 243199373 + 126975834 126976367 L1PA3long 6157 + 5623 6157 59441 421 0 1 112 chain 17386 chr2 243199373 + 126978742 126978991 L1PA8 5853 - 15 258 134551 77 2 1 19 3 2 51 2 1 5 1 0 75 2 0 12 chain 76954 chr2 243199373 + 126982576 126983619 L1PA8 5853 + 4808 5853 44997 152 4 5 42 0 2 289 12 13 107 17 19 127 2 1 43 2 0 53 0 3 15 1 0 8 10 9 44 2 1 19 1 0 93 chain 9821 chr2 243199373 + 126987320 126987429 L1PA4 6152 - 9 118 161489 109 chain 29505 chr2 243199373 + 127007517 127007830 AluYb8 318 - 5 318 86620 313 chain 21916 chr2 243199373 + 127043434 127043698 AluSg 306 + 26 303 120559 146 0 13 118 chain 48232 chr2 243199373 + 127051423 127051983 L1PA7 6471 - 5 567 60289 152 0 1 289 1 2 118 chain 16371 chr2 243199373 + 127131505 127132048 LTR18B 584 + 0 556 137281 28 0 1 8 168 199 24 2 0 18 1 0 30 19 18 12 0 2 46 99 82 88 chain 28561 chr2 243199373 + 127139782 127140176 LTR7 482 - 8 482 90913 150 0 10 49 9 41 109 9 47 68 chain 23888 chr2 243199373 + 127146674 127147009 THE1D-int 1627 + 1282 1622 110974 12 0 3 52 5 14 67 9 2 18 2 1 4 0 1 166 chain 397953 chr2 243199373 + 127151251 127156709 L1PB1 5432 - 8 5400 10170 4 1 0 16 1 0 13 1 0 20 2 1 21 71 53 16 6 5 39 18 16 53 2 0 9 4 0 12 1 0 12 1 0 20 1 0 9 24 2 105 1 0 190 2 3 97 0 1 86 20 17 71 2 0 88 0 1 253 1 21 172 0 9 171 36 42 50 7 10 154 1 0 4 0 1 276 4 2 437 1 2 197 0 2 122 1 0 26 21 0 333 0 1 477 16 2 173 0 1 103 5 0 21 28 20 19 1 0 4 0 1 579 5 9 205 11 4 232 6 9 156 1 2 110 chain 3730 chr2 243199373 + 127170195 127170238 Tigger1 2417 - 442 485 211470 43 chain 8162 chr2 243199373 + 127183368 127183483 MER85 139 - 16 138 170165 18 0 11 40 5 1 52 chain 7561 chr2 243199373 + 127193592 127193691 L1PA8 5853 - 8 106 173796 85 1 0 13 chain 481139 chr2 243199373 + 127208949 127214243 L1PA3long 6157 - 2 5299 7689 1441 1 0 2172 0 3 1498 0 1 182 chain 3326 chr2 243199373 + 127222149 127222186 MER53 195 + 34 71 218457 37 chain 62372 chr2 243199373 + 127236194 127237400 Charlie3 2679 + 19 2603 51731 15 1 0 23 14 15 295 0 1 68 10 8 27 0 1747 274 368 0 111 chain 24567 chr2 243199373 + 127236924 127237289 THE1B 368 + 0 368 107162 169 1 0 21 7 10 14 6 10 8 1 0 8 1 0 66 7 6 56 chain 19934 chr2 243199373 + 127242781 127243062 L1PA8 5853 - 1 279 127348 45 0 2 45 1 0 19 2 1 41 6 0 6 0 6 6 3 2 71 2 0 34 chain 25093 chr2 243199373 + 127250450 127250767 AluY 311 + 0 311 104331 84 7 1 226 chain 33256 chr2 243199373 + 127250769 127251163 L1PA8A 6298 - 7 401 78796 394 chain 28049 chr2 243199373 + 127251164 127251594 MER4D1 891 - 414 888 92830 48 1 0 15 1 0 100 3 4 4 1 0 40 0 28 154 35 53 28 chain 74580 chr2 243199373 + 127254421 127255432 MER11A 1151 - 0 1151 46220 230 0 1 61 6 40 72 0 4 52 6 9 135 12 13 90 8 9 109 8 10 22 4 0 66 1 0 50 0 99 79 chain 7103 chr2 243199373 + 127281549 127281664 MER31A 484 - 335 444 176738 20 2 0 6 8 5 24 1 0 54 chain 11503 chr2 243199373 + 127287334 127287544 L1PA11 4918 - 417 614 154288 13 2 1 12 2 0 68 3 1 10 13 12 36 1 0 9 1 0 11 5 0 24 chain 30171 chr2 243199373 + 127309411 127309856 MLT2A1 477 - 11 477 84274 27 1 2 8 14 0 11 31 61 34 1 0 151 0 4 29 0 1 138 chain 6566 chr2 243199373 + 127326856 127327061 MER6A 605 - 0 176 180734 43 107 79 48 1 0 6 chain 17714 chr2 243199373 + 127337833 127338067 L1PA10 4194 + 3920 4150 133666 110 1 0 86 3 0 34 chain 5358 chr2 243199373 + 127359102 127359238 MLT1A0 366 - 203 357 191459 57 42 60 16 1 4 6 3 0 11 chain 219897 chr2 243199373 + 127368857 127371469 L1PA7 6471 - 5 2626 17884 334 0 1 431 0 2 76 2 0 399 0 7 231 0 1 29 1 0 283 6 10 28 0 1 54 0 1 4 1 0 78 4 0 651 chain 17595 chr2 243199373 + 127391076 127391274 L1PA4 6152 + 5954 6151 134010 145 1 0 52 chain 24646 chr2 243199373 + 127403585 127403991 MLT2A1 477 - 95 477 106749 45 9 0 36 0 6 96 31 4 22 6 10 12 8 9 14 1 2 126 chain 454744 chr2 243199373 + 127403991 127409552 HERVL-int 5654 - 0 5647 8589 225 0 1 328 4 6 244 0 2 42 0 13 425 8 12 34 1 0 1109 16 42 524 16 11 841 5 19 390 0 1 267 1 0 78 0 1 254 0 24 277 3 6 142 0 1 16 0 1 311 chain 33253 chr2 243199373 + 127409559 127410002 MLT2A1 477 - 0 477 78800 19 1 0 23 4 0 13 4 38 211 1 5 26 1 2 140 chain 23224 chr2 243199373 + 127412105 127412384 AluSp 311 + 11 289 114571 258 2 1 19 chain 24336 chr2 243199373 + 127514870 127515243 THE1C 375 + 8 375 108442 70 17 9 87 5 8 8 1 0 90 7 8 62 1 0 25 chain 20461 chr2 243199373 + 127554078 127554314 AluY 311 + 52 288 125727 236 chain 25715 chr2 243199373 + 127623105 127623448 THE1A 353 - 12 353 101234 142 1 0 79 12 11 109 chain 82058 chr2 243199373 + 127623461 127624494 THE1A-int 1579 - 14 1028 42740 174 0 1 16 2 0 304 0 1 57 0 1 129 20 0 331 chain 6376 chr2 243199373 + 127630035 127630130 MSTC 436 + 0 97 182198 44 0 1 31 8 9 12 chain 40723 chr2 243199373 + 127632548 127633081 LTR10A 586 + 0 563 68276 45 0 1 149 0 29 218 0 1 4 2 1 32 4 0 6 0 4 73 chain 24567 chr2 243199373 + 127698666 127699035 MER4A1_ 611 + 9 387 107163 44 19 20 28 19 24 163 2 5 94 chain 15427 chr2 243199373 + 127701140 127701492 LOR1b 457 + 43 440 140110 19 98 115 71 33 62 28 1 0 102 chain 65199 chr2 243199373 + 127713865 127714728 L1P3 4156 + 0 851 50472 226 5 6 19 1 0 66 4 3 78 17 5 239 6 7 202 chain 481331 chr2 243199373 + 127715243 127721418 L1PA8A 6298 - 7 6166 7677 107 0 1 429 0 1 84 0 2 96 0 1 357 1 2 94 16 3 111 0 2 181 0 1 129 0 1 150 0 1 478 0 1 95 1 2 90 0 1 171 1 0 21 1 0 312 0 1 789 0 3 10 5 4 59 4 1 680 0 4 112 12 34 520 0 1 8 1 0 25 17 16 292 4 0 150 11 9 133 0 1 5 30 28 47 6 4 9 1 0 14 2 0 18 1 0 4 1 2 54 8 0 22 12 11 31 2 0 9 5 0 14 1 0 8 2 1 5 1 0 8 1 0 13 8 6 15 2 0 10 1 0 6 16 14 8 1 0 17 chain 24331 chr2 243199373 + 127751289 127751576 AluY 311 + 0 285 108477 29 4 0 97 0 2 157 chain 51518 chr2 243199373 + 127754791 127755720 PABL_A 660 + 0 649 57953 56 0 4 24 292 7 49 0 1 348 2 0 20 1 3 137 chain 18673 chr2 243199373 + 127754879 127755151 L1PA8 5853 + 5587 5853 131022 20 3 1 70 2 1 10 1 0 54 1 0 17 2 1 92 chain 2993 chr2 243199373 + 127759157 127759189 Tigger3b 1229 + 254 286 225197 32 chain 15219 chr2 243199373 + 127775650 127775847 L1PA8 5853 + 5661 5853 140719 21 1 0 11 2 0 47 2 1 19 1 0 93 chain 37524 chr2 243199373 + 127786190 127786683 L1PA8 5853 - 0 487 72786 16 0 1 76 1 0 19 2 1 52 1 0 9 5 4 67 2 0 44 1 0 198 chain 23508 chr2 243199373 + 127867483 127867759 AluSp 311 + 20 296 113085 276 chain 135253 chr2 243199373 + 127876472 127878068 SVA_F 1814 - 0 1479 26968 631 130 0 60 1 2 155 3 18 60 3 0 553 chain 6951 chr2 243199373 + 127877112 127877233 SVA_F 1814 - 686 807 129564 121 chain 52720 chr2 243199373 + 127881068 127882305 PABL_A 660 - 2 660 57175 71 286 0 96 306 0 234 0 1 129 1 0 34 0 9 29 0 4 51 chain 3122 chr2 243199373 + 127908037 127908074 L1M4 1397 - 557 594 222512 37 chain 39025 chr2 243199373 + 127928822 127929281 LTR2 463 + 0 463 70704 232 9 12 123 0 1 95 chain 15387 chr2 243199373 + 127946964 127947195 L1PA8 5853 + 5626 5853 140241 52 2 1 14 13 12 35 2 1 15 5 4 93 chain 488243 chr2 243199373 + 127965754 127972350 L1PA8A 6298 + 36 6290 7430 4 1 0 18 32 21 21 3 0 19 18 10 18 2 1 9 3 2 10 2 1 7 1 0 12 2 0 13 9 6 13 1 0 8 1 0 6 11 9 12 6 2 6 1 0 45 1 0 21 6 0 72 0 1 4 2 0 14 2 1 9 6 4 240 0 1 400 1 2 24 0 4 20 4 1 14 3 0 39 5 6 55 0 1 783 4 9 314 0 1 143 13 9 384 1 2 14 7 1 16 1 14 237 333 0 203 1 0 36 0 25 434 4 6 44 0 1 4 1 0 65 0 1 837 6 5 18 1 4 475 12 17 145 2 1 78 0 2 15 13 0 91 0 4 498 0 2 28 0 3 79 chain 38350 chr2 243199373 + 127981517 127982028 L1PA8 5853 - 0 500 71647 93 1 0 16 1 0 48 1 0 17 2 1 70 2 0 46 1 0 97 4 0 112 chain 24279 chr2 243199373 + 127992099 127992393 AluSz6 309 + 5 299 108783 294 chain 21578 chr2 243199373 + 127997367 127997747 THE1D 372 + 0 372 121855 25 2 0 30 9 0 13 17 18 78 39 43 18 1 0 10 1 0 137 chain 3309 chr2 243199373 + 128013988 128014027 MADE1 96 - 57 96 218791 39 chain 5109 chr2 243199373 + 128071288 128071347 Tigger3c 601 - 71 130 193988 59 chain 8255 chr2 243199373 + 128074456 128074551 U6 107 + 8 103 169647 95 chain 136018 chr2 243199373 + 128110252 128111828 SVA_D 2077 + 15 2072 26829 18 13 10 499 0 40 298 0 396 25 13 14 32 1 0 14 0 49 35 6 5 622 chain 216808 chr2 243199373 + 128130236 128132952 HERVK22-int 3844 + 0 2741 18068 307 13 16 196 0 1 196 8 12 831 0 2 673 0 3 116 1 4 230 71 80 74 chain 24236 chr2 243199373 + 128141906 128142242 Tigger1 2417 + 1466 1831 109021 41 15 10 222 6 40 52 chain 10741 chr2 243199373 + 128153486 128153648 L1MA4A 3247 + 2957 3116 157242 11 3 0 12 3 4 123 1 0 9 chain 6001 chr2 243199373 + 128209597 128209665 LTR55 556 + 155 223 185234 68 chain 5729 chr2 243199373 + 128229809 128229877 U4 144 + 0 68 187844 68 chain 3498 chr2 243199373 + 128296006 128296044 MER3 215 - 125 163 215375 38 chain 6571 chr2 243199373 + 128298039 128298181 L1PB2 3958 - 208 374 180687 27 5 31 11 18 17 43 7 6 31 chain 69159 chr2 243199373 + 128300149 128301124 LTR5_Hs 974 - 0 974 48733 191 10 7 51 50 51 17 1 2 138 0 1 60 0 4 194 3 0 7 17 20 11 5 0 220 chain 253034 chr2 243199373 + 128311270 128315195 L1PBa 3878 - 130 3415 16080 11 2 0 21 2 1 319 323 0 175 3 0 106 1 5 66 8 4 82 0 1 65 0 1 70 308 1 19 0 5 81 3 2 8 8 0 103 4 0 475 0 1 55 1 0 12 0 1 240 0 5 190 12 18 439 0 6 214 20 6 328 10 8 141 chain 20862 chr2 243199373 + 128312524 128312812 AluSg7 307 - 11 298 124422 26 12 11 104 3 6 7 3 0 133 chain 92336 chr2 243199373 + 128315198 128316547 L1PB1 5432 + 4096 5367 38864 339 2 1 194 5 0 75 0 2 279 11 12 105 59 11 24 1 0 9 1 0 11 5 1 8 2 0 53 2 1 15 1 0 44 1 0 16 1 0 6 1 4 8 13 0 13 2 0 5 14 11 24 chain 24876 chr2 243199373 + 128329058 128329343 AluSp 311 - 15 300 105477 285 chain 97756 chr2 243199373 + 128352376 128353655 L1P3 4156 - 20 1313 37347 20 1 0 11 2 0 295 1 5 59 0 1 319 1 2 7 1 0 320 0 4 30 0 1 42 0 1 91 0 6 79 chain 3089 chr2 243199373 + 128360258 128360292 Tigger1 2417 - 587 621 223123 34 chain 39563 chr2 243199373 + 128372841 128373345 LTR3B_ 500 - 1 500 69945 131 0 2 65 4 0 122 7 0 142 1 5 32 chain 29727 chr2 243199373 + 128375062 128375376 AluYb8 318 - 4 318 85732 314 chain 38378 chr2 243199373 + 128375752 128376241 LTR3B_ 500 - 10 494 71601 133 0 4 14 5 7 33 6 2 118 7 0 173 chain 20016 chr2 243199373 + 128420122 128420377 L1PA4 6152 + 5910 6151 127092 92 15 1 148 chain 44668 chr2 243199373 + 128440996 128441498 LTR2C 499 + 0 499 63413 441 3 0 58 chain 12930 chr2 243199373 + 128465295 128465517 AluSz6 309 + 39 267 148502 68 27 37 79 21 17 27 chain 30254 chr2 243199373 + 128509882 128510198 AluYb8 318 + 0 316 84046 316 chain 165583 chr2 243199373 + 128544427 128547239 SVA_F 1814 - 0 1789 22575 637 1 0 215 0 15 32 1035 0 27 1 0 672 1 0 191 chain 13802 chr2 243199373 + 128545312 128545459 SVA_F 1814 - 708 852 86294 101 1 0 4 2 0 39 chain 12073 chr2 243199373 + 128545459 128545586 SVA_F 1814 - 676 803 139018 127 chain 15590 chr2 243199373 + 128545587 128545757 SVA_F 1814 - 627 796 139613 11 1 0 158 chain 20311 chr2 243199373 + 128545824 128546040 SVA_F 1814 - 637 852 126202 176 1 0 39 chain 4622 chr2 243199373 + 128546040 128546088 SVA_F 1814 - 676 724 168978 48 chain 16562 chr2 243199373 + 128546130 128546313 SVA_F 1814 - 540 723 136765 183 chain 21419 chr2 243199373 + 128551800 128552070 AluSq10 312 + 9 278 122449 196 11 10 63 chain 8234 chr2 243199373 + 128556479 128556572 HY4 93 - 0 93 169756 93 chain 30250 chr2 243199373 + 128570231 128570650 LTR7B 505 + 0 495 84062 94 0 3 8 0 10 60 0 38 12 0 1 6 1 24 24 3 6 79 1 0 76 14 13 41 chain 20270 chr2 243199373 + 128588456 128588799 LTR18A 364 + 0 364 126317 202 20 33 14 12 16 13 0 1 6 1 7 24 9 12 24 6 0 12 chain 26434 chr2 243199373 + 128646073 128646381 AluSp 311 + 0 307 98288 91 0 3 155 4 0 58 chain 22560 chr2 243199373 + 128659593 128659847 L1PA5 6144 + 5889 6144 117760 43 0 1 211 chain 7212 chr2 243199373 + 128667585 128667709 L1MA3 4352 - 44 160 175987 15 13 11 24 2 0 23 4 0 43 chain 51520 chr2 243199373 + 128673411 128675718 Tigger1 2417 - 631 2352 57951 139 13 2 56 0 1 107 0 1 17 0 3 24 1517 935 154 27 17 28 6 12 140 0 8 28 10 8 41 chain 29304 chr2 243199373 + 128683874 128684268 MSTA 426 - 38 426 87547 98 0 2 48 6 4 28 5 0 6 0 1 71 2 0 130 chain 21422 chr2 243199373 + 128714042 128714287 L1PA5 6144 + 5898 6144 122436 103 0 1 142 chain 6872 chr2 243199373 + 128715624 128715701 L1PA8 5853 + 5776 5853 178416 77 chain 51276 chr2 243199373 + 128719896 128720462 L1PA4 6152 + 5585 6151 58133 566 chain 20884 chr2 243199373 + 128721161 128721436 THE1B 368 + 0 276 124339 15 2 0 25 0 5 130 2 0 101 chain 10200 chr2 243199373 + 128792602 128792852 MER4D 903 - 15 270 159621 38 27 26 77 75 81 33 chain 16401 chr2 243199373 + 128801375 128802729 HSMAR1 1287 + 7 798 137207 82 1123 559 72 0 1 77 chain 228731 chr2 243199373 + 128802769 128808721 L1PB1 5432 - 12 3914 17372 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 2114 8 4 1 0 16 1 0 43 1 0 16 2 1 50 29 23 13 6 5 15 1 0 11 1 0 5 0 1 44 16 16 310 0 1 104 0 1 75 1 0 335 0 1 193 3 0 193 0 4 80 336 0 12 1 0 245 1 5 133 1 3 60 10 3 21 0 1 273 0 17 85 5 6 33 3 2 343 386 779 93 15 15 93 chain 31328 chr2 243199373 + 128802920 128804510 L1PB1 5432 - 142 626 81939 10 7 6 37 1 0 16 2 1 50 1170 67 297 chain 28779 chr2 243199373 + 128811203 128811685 LTR12F 595 - 0 595 89985 74 0 4 83 1 20 22 9 0 41 0 64 36 51 42 24 0 8 29 8 6 23 1 38 55 0 1 25 chain 14206 chr2 243199373 + 128812797 128812961 HSMAR1 1287 + 1122 1286 143859 164 chain 23193 chr2 243199373 + 128857987 128858295 AluSp 311 - 19 311 114704 172 28 12 108 chain 3604 chr2 243199373 + 128965762 128965837 SVA_F 1814 + 626 1062 213584 30 15 376 30 chain 2735 chr2 243199373 + 128966194 128966248 SVA_F 1814 + 397 488 229677 26 10 47 18 chain 34643 chr2 243199373 + 128973500 128974064 LTR12F 595 + 4 588 76702 62 1 78 25 61 16 21 0 9 90 1 0 87 3 0 116 5 0 13 9 0 48 2 0 15 1 0 4 chain 12696 chr2 243199373 + 128983216 128983811 MSTB 430 + 7 196 149459 75 411 3 68 3 5 38 chain 2934 chr2 243199373 + 128983295 128983327 MSTB 430 + 85 117 226428 32 chain 3042 chr2 243199373 + 129087842 129087876 tRNA-Cys-TGY 72 - 37 71 224184 34 chain 8785 chr2 243199373 + 129091531 129091674 MER30 238 + 89 238 166741 19 4 15 28 4 2 37 3 0 48 chain 3673 chr2 243199373 + 129091841 129091884 MER6B 211 + 167 210 212328 43 chain 4974 chr2 243199373 + 129097910 129098040 HAL1-2a_MD 234 - 109 222 195433 11 11 0 21 0 15 14 0 9 16 24 0 15 3 0 5 3 0 7 chain 26492 chr2 243199373 + 129106665 129107113 L1MA3 4352 - 0 421 98075 5 2 0 17 4 6 11 1 0 25 8 6 24 2 0 22 4 0 123 3 0 7 33 17 53 0 1 104 chain 5724 chr2 243199373 + 129108412 129108482 HY1 111 - 8 78 187888 70 chain 22703 chr2 243199373 + 129112679 129113051 MSTB 430 + 0 405 117058 62 5 6 81 2 17 32 13 23 72 31 38 74 chain 24799 chr2 243199373 + 129144305 129144592 AluSc 308 - 22 308 105894 12 1 0 274 chain 8857 chr2 243199373 + 129150905 129151019 THE1B 368 + 243 356 166339 59 1 0 54 chain 24703 chr2 243199373 + 129159107 129159398 AluSp 311 - 19 311 106415 10 0 1 281 chain 84533 chr2 243199373 + 129175161 129176104 SVA_E 1901 - 11 1083 41706 193 1 0 436 6 131 151 4 13 39 4 0 109 chain 10787 chr2 243199373 + 129176137 129176389 SVA_F 1814 - 595 848 77507 4 0 1 248 chain 3017 chr2 243199373 + 129176389 129176425 SVA_F 1814 - 912 949 178429 14 1 2 21 chain 34252 chr2 243199373 + 129176464 129176955 SVA_F 1814 - 523 1045 77276 17 1 0 16 0 1 175 0 1 80 0 1 38 77 14 43 0 89 39 0 3 5 chain 2440 chr2 243199373 + 129176791 129176848 SVA_F 1814 - 1085 1142 77507 57 chain 2779 chr2 243199373 + 129176955 129176986 SVA_F 1814 - 586 617 178163 31 chain 42126 chr2 243199373 + 129200852 129201390 MER41A 554 - 0 553 66475 52 23 36 35 0 1 337 0 1 91 chain 2961 chr2 243199373 + 129212232 129212407 MER77 626 + 380 540 225870 24 125 110 26 chain 9094 chr2 243199373 + 129212951 129213116 LTR18A 364 + 170 364 165100 15 29 66 53 1 0 47 7 0 13 chain 5453 chr2 243199373 + 129218547 129218615 L1M4c 1769 + 1661 1729 190490 68 chain 4052 chr2 243199373 + 129243371 129243420 MER63C 923 - 800 849 206619 49 chain 49526 chr2 243199373 + 129259736 129260322 LTR71B 605 + 0 605 59370 130 0 19 456 chain 5161 chr2 243199373 + 129274759 129274852 MLT1B 390 + 5 95 193436 14 2 0 5 1 0 5 1 0 17 4 5 44 chain 29863 chr2 243199373 + 129335497 129335816 AluYb8 318 + 0 318 85233 132 1 0 186 chain 25691 chr2 243199373 + 129344497 129344810 AluYk4 311 - 2 310 101326 28 0 2 156 7 0 122 chain 72239 chr2 243199373 + 129372158 129372999 L1PA6 6164 + 5308 6149 47362 452 0 1 260 1 0 128 chain 5620 chr2 243199373 + 129412600 129412670 MSTA 426 + 355 426 188866 40 0 1 30 chain 123117 chr2 243199373 + 129428775 129430262 LTR12C 1709 - 0 1709 30001 168 0 102 211 0 4 38 0 2 60 9 7 5 1 0 275 1 0 15 0 119 232 0 3 7 6 1 356 0 1 103 chain 42895 chr2 243199373 + 129438484 129439048 LTR10C 591 + 0 591 65545 77 5 6 47 4 15 204 0 1 144 0 1 15 0 1 4 0 1 7 4 15 53 chain 31316 chr2 243199373 + 129440396 129440838 LTR2 463 + 0 463 81964 130 0 4 28 8 29 19 5 0 140 0 2 5 2 0 5 12 13 88 chain 26394 chr2 243199373 + 129455129 129455519 LTR12_ 688 - 0 688 98437 205 19 343 58 25 0 58 1 0 24 chain 28116 chr2 243199373 + 129462252 129462545 AluYa5 310 - 17 310 92585 293 chain 22521 chr2 243199373 + 129512700 129512960 AluY 311 + 41 299 117925 77 1 0 15 1 0 166 chain 30740 chr2 243199373 + 129560433 129560973 MER4B 649 - 81 649 82968 103 27 23 18 1 0 68 6 21 113 2 25 27 30 27 22 3 6 7 2 0 76 14 11 21 chain 532370 chr2 243199373 + 129580968 129588407 L1PA7 6471 + 3 6457 3925 406 1 2 37 0 1 1033 0 5 329 0 1 191 0 5 14 1014 2 133 0 1 359 1 3 852 0 1 106 7 2 771 1 2 53 0 1 329 0 2 395 2 6 231 2 1 215 1 2 83 0 2 34 5 8 77 0 2 183 0 1 430 2 1 142 chain 88457 chr2 243199373 + 129583001 129583990 L1PA4 6152 - 1 985 40203 20 6 1 963 chain 27189 chr2 243199373 + 129603787 129604075 AluYg6 310 - 6 294 95634 288 chain 369234 chr2 243199373 + 129606556 129610859 L1P1 4361 + 4 4327 11114 132 1 15 841 2 1 766 0 1 172 0 4 258 0 2 980 0 1 754 2 3 216 1 0 155 1 0 22 chain 561136 chr2 243199373 + 129616558 129622590 L1PA2 6032 - 0 6032 309 6032 chain 72699 chr2 243199373 + 129639244 129640089 L1PA5 6144 + 5304 6142 47171 758 11 9 55 1 0 9 4 0 7 chain 55831 chr2 243199373 + 129640338 129641377 LTR12 884 - 15 884 55230 79 320 0 307 1 21 85 2 0 12 0 91 178 0 41 55 chain 27512 chr2 243199373 + 129645884 129646327 MLT2A2 560 + 0 560 94624 169 53 58 64 0 98 17 0 11 39 0 5 41 9 5 6 0 2 45 chain 62743 chr2 243199373 + 129660615 129661575 LTR12D 1347 - 354 1273 51566 277 0 17 10 119 0 122 0 31 63 6 0 132 7 43 14 25 25 185 chain 1991 chr2 243199373 + 129660904 129660946 LTR12D 1347 - 701 780 158779 25 0 37 17 chain 5673 chr2 243199373 + 129662754 129662826 HERV9-int 5642 - 818 890 188367 72 chain 8171 chr2 243199373 + 129680680 129680773 L1PA3long 6157 + 6064 6157 170116 93 chain 535490 chr2 243199373 + 129700884 129707005 L1PA5 6144 - 1 6141 3520 10 3 1 749 1 0 95 0 1 1496 0 1 1227 0 4 59 12 14 291 1 3 257 0 4 552 0 4 146 0 1 360 1 3 136 1 2 724 chain 7608 chr2 243199373 + 129712701 129712798 MER30B 195 - 3 95 173496 63 5 0 29 chain 11190 chr2 243199373 + 129718420 129718572 THE1D 372 - 0 155 155468 45 0 1 50 1 4 48 1 0 7 chain 17799 chr2 243199373 + 129718672 129718904 LOR1b 457 - 168 401 133408 142 2 0 53 0 3 35 chain 18190 chr2 243199373 + 129720588 129720832 Tigger1 2417 - 1078 1320 132358 21 9 7 214 chain 262859 chr2 243199373 + 129722189 129725079 L1PA3long 6157 + 3267 6157 15541 2890 chain 16201 chr2 243199373 + 129757908 129758226 L1PB1 5432 + 5103 5391 137749 11 1 0 24 1 0 9 1 0 4 0 1 5 6 2 9 2 0 40 1 0 5 0 1 6 2 1 16 1 0 44 30 16 30 2 0 5 1 0 14 2 0 27 1 0 18 chain 21928 chr2 243199373 + 129768712 129768974 AluSp 311 + 12 274 120508 262 chain 30525 chr2 243199373 + 129795330 129795715 L1PA7 6471 - 1 385 83376 4 1 0 8 1 0 214 0 1 157 chain 524348 chr2 243199373 + 129795791 129801825 L1PA4 6152 - 78 6146 4739 1185 1 0 4 4 5 941 0 1 755 1 0 2668 0 26 38 0 8 71 0 1 204 14 13 148 chain 471439 chr2 243199373 + 129801962 129808391 L1PA7 6471 - 1 6466 7991 457 315 0 302 9 11 26 0 1 56 1 0 610 26 24 579 0 1 89 0 3 301 7 6 52 0 1 406 1 0 4 0 1 41 0 2 544 2 14 212 0 1 26 1 3 64 5 0 80 0 3 156 0 1 117 10 9 342 1 2 129 0 1 161 0 2 313 0 1 5 0 49 12 9 0 246 0 1 170 15 128 24 0 1 168 13 183 51 46 48 19 11 10 28 8 9 159 chain 23684 chr2 243199373 + 129810373 129810669 AluY 311 + 15 296 112129 273 15 0 8 chain 25572 chr2 243199373 + 129850298 129850641 L1PA7 6471 - 6 344 101865 167 5 0 84 12 13 70 1 0 4 chain 25253 chr2 243199373 + 129867196 129867499 AluY 311 + 0 296 103458 8 7 0 288 chain 7161 chr2 243199373 + 129870834 129870918 MER2 342 - 126 210 176327 84 chain 32979 chr2 243199373 + 129877687 129878204 L1PB3 3668 - 575 1090 79250 37 0 1 56 0 1 10 2 0 235 1 0 47 46 45 37 3 2 17 5 6 21 chain 3537 chr2 243199373 + 129901906 129901947 LTR12D 1347 - 653 694 214762 41 chain 22806 chr2 243199373 + 129956436 129956715 AluSq2 311 + 16 297 116551 116 0 2 163 chain 29785 chr2 243199373 + 129962285 129962679 L1PA8 5853 + 5460 5853 85531 23 0 1 80 1 0 45 2 0 53 0 5 15 1 0 5 10 9 48 1 0 16 1 0 93 chain 11366 chr2 243199373 + 129975569 129975690 L1PA7 6471 + 6158 6279 154830 121 chain 14090 chr2 243199373 + 129975690 129975878 L1PA7 6471 + 6280 6457 144257 40 15 3 68 0 1 65 chain 39691 chr2 243199373 + 129989776 129990247 L1PA7 6471 + 5737 6211 69766 398 0 3 73 chain 21601 chr2 243199373 + 129990251 129990509 L1PA7 6471 + 6212 6470 121764 258 chain 2944 chr2 243199373 + 130038458 130038491 L1PA2 6032 - 7 40 226236 33 chain 87190 chr2 243199373 + 130043950 130044995 L1PA8A 6298 - 17 1065 40694 89 1 0 620 0 2 12 3 4 312 0 1 8 chain 30758 chr2 243199373 + 130044995 130045436 L1P3 4156 + 3107 3530 82566 372 0 13 8 36 5 25 chain 97981 chr2 243199373 + 130046987 130048105 L1PA4 6152 - 1 1124 37283 146 4 5 610 1 0 82 0 4 148 0 1 127 chain 40678 chr2 243199373 + 130051635 130052100 L1P1 4361 + 2202 2669 68325 110 1 2 265 0 1 89 chain 32649 chr2 243199373 + 130052100 130052467 L1PA5 6144 + 5746 6113 77512 367 chain 34704 chr2 243199373 + 130086935 130087444 LTR12F 595 + 0 595 76616 91 30 124 274 9 10 32 12 3 61 chain 94842 chr2 243199373 + 130116444 130117598 L1PA7 6471 + 5308 6470 38134 18 5 7 95 1 0 190 0 7 19 16 10 306 0 6 504 chain 134332 chr2 243199373 + 130151713 130153387 L1PA8 5853 + 4166 5834 27144 24 1 3 63 0 1 83 1 0 667 0 2 74 6 4 282 7 0 152 0 3 15 0 1 22 1 0 46 2 0 72 1 0 7 2 1 56 1 0 16 15 15 24 0 1 34 chain 33874 chr2 243199373 + 130168184 130168567 L1PA3long 6157 - 1 384 77821 4 1 0 149 0 1 229 chain 566137 chr2 243199373 + 130168626 130174973 L1HS 6032 - 0 6031 143 2989 1 0 1329 315 0 126 1 0 1415 0 1 171 chain 28918 chr2 243199373 + 130172952 130173260 AluYa5 310 + 0 307 89382 132 1 0 175 chain 24179 chr2 243199373 + 130178614 130178897 AluSc 308 + 11 294 109322 283 chain 59419 chr2 243199373 + 130181864 130182539 L1PA5 6144 - 12 691 53160 446 0 2 155 1 3 73 chain 46689 chr2 243199373 + 130192314 130193430 L1PA8 5853 - 0 744 61468 11 4 0 37 12 8 17 0 3 11 17 54 20 1 0 4 11 10 62 0 9 43 1 0 42 1 0 6 0 1 14 429 19 373 chain 3320 chr2 243199373 + 130192982 130193017 L1PA8 5853 - 43 78 218571 35 chain 24592 chr2 243199373 + 130193467 130193763 L1PA8 5853 + 4763 5063 107032 246 0 4 50 chain 41887 chr2 243199373 + 130204623 130205117 L1PA5 6144 + 5650 6144 66779 180 0 1 201 1 0 112 chain 22761 chr2 243199373 + 130207054 130207337 AluY 311 + 11 297 116773 108 1 0 13 0 1 115 0 3 46 chain 40967 chr2 243199373 + 130258715 130259199 L1PA4 6152 - 0 498 67960 13 0 3 97 6 17 368 chain 26270 chr2 243199373 + 130268988 130269288 AluYk4 311 + 2 297 98933 284 5 0 11 chain 149517 chr2 243199373 + 130274276 130276490 L1PB1 5432 - 140 2298 24686 12 2 1 43 6 5 10 6 4 49 2 0 9 2 0 3 2 0 22 1 0 20 3 0 5 5 6 143 6 1 79 4 13 246 3 0 207 1 2 238 4 8 31 86 35 101 2 1 258 0 3 16 11 7 110 16 17 199 0 3 251 chain 20771 chr2 243199373 + 130282594 130282875 L1PREC2 3366 + 858 1134 124713 94 9 0 161 1 5 16 chain 505630 chr2 243199373 + 130289493 130295539 L1PA5 6144 + 0 6144 6485 124 0 14 15 3 15 96 16 17 178 4 0 710 9 0 60 1 0 418 0 3 5 3 0 33 0 2 94 0 16 69 0 1 124 16 10 54 0 1 210 13 89 136 0 1 681 1 0 333 1 0 46 0 1 115 7 5 95 0 1 1522 1 0 77 7 6 356 0 1 405 3 0 5 chain 35448 chr2 243199373 + 130298352 130298779 L1PA5 6144 + 5716 6140 75622 265 6 1 6 0 1 17 0 1 133 chain 23701 chr2 243199373 + 130319601 130319878 AluSq2 311 + 20 298 112030 113 0 1 164 chain 466859 chr2 243199373 + 130326848 130332520 L1PA7 6471 + 741 6464 8156 93 0 1 108 0 1 580 16 6 15 0 8 380 3 0 283 4 1 5 0 3 40 1 0 39 0 7 208 0 2 119 0 1 40 13 15 283 1 0 61 7 8 10 0 1 41 0 4 896 1 0 185 0 20 401 0 2 65 4 16 139 0 2 125 1 0 30 1 0 470 0 1 217 14 16 11 1 4 81 4 3 676 chain 19494 chr2 243199373 + 130356849 130357142 L1PA8 5853 - 0 281 128670 84 8 3 6 1 0 19 2 1 45 2 0 16 2 1 69 2 0 37 chain 164806 chr2 243199373 + 130357161 130359523 L1PA10 4194 - 1615 3942 22675 759 8 0 37 0 1 293 7 8 377 0 3 14 9 11 52 5 8 64 4 20 9 28 0 292 6 9 132 20 18 56 4 5 8 4 0 8 4 0 9 3 0 3 1 0 13 97 84 14 3 1 19 chain 14970 chr2 243199373 + 130371747 130371963 MER30 238 + 0 238 141411 71 0 1 35 4 0 8 13 38 85 chain 5689 chr2 243199373 + 130395156 130395226 LOR1b 457 + 220 290 188208 70 chain 6327 chr2 243199373 + 130423498 130423568 L1PA3long 6157 + 6087 6157 182579 70 chain 8346 chr2 243199373 + 130439897 130439994 L1PA6 6164 - 6 103 169143 97 chain 429322 chr2 243199373 + 130440000 130444595 L1HS 6032 - 0 6018 9326 3481 0 1424 215 1 0 898 chain 28859 chr2 243199373 + 130448005 130448374 THE1C 375 + 7 375 89620 343 1 0 25 chain 68072 chr2 243199373 + 130453111 130453964 THE1C-int 1605 + 737 1591 49210 7 0 1 419 7 6 399 0 1 21 chain 90095 chr2 243199373 + 130458922 130459958 LTR5A 1029 + 0 1029 39614 150 1 0 725 6 0 154 chain 23768 chr2 243199373 + 130466391 130466700 MER51B 395 - 22 395 111665 74 0 6 49 0 1 68 3 59 82 0 1 33 chain 5349 chr2 243199373 + 130493770 130493933 HAL1-2a_MD 234 - 151 234 191555 53 38 0 15 42 0 15 chain 20628 chr2 243199373 + 130503485 130503822 THE1D 372 + 0 372 125196 95 2 5 5 3 0 18 0 20 23 0 4 8 14 16 44 0 8 29 14 16 49 1 0 32 chain 27172 chr2 243199373 + 130504199 130504568 THE1B 368 - 0 368 95687 18 3 0 5 6 11 166 2 1 154 2 0 13 chain 24263 chr2 243199373 + 130517940 130518200 AluYa5 310 + 39 299 108886 260 chain 29398 chr2 243199373 + 130518665 130518985 AluYb8 318 + 0 317 87088 118 3 0 199 chain 45192 chr2 243199373 + 130546336 130546979 L1PA13 3608 - 107 741 62834 8 3 0 27 1 0 18 2 0 5 2 0 47 3 1 7 1 0 23 1 0 9 1 0 5 0 2 9 6 5 62 2 0 114 1 0 31 1 0 38 13 20 203 chain 57399 chr2 243199373 + 130565123 130565778 SVA_B 1603 - 1 734 54288 587 0 82 50 4 0 14 chain 59489 chr2 243199373 + 130571822 130572574 MER4E 760 - 0 760 53117 45 0 3 30 0 2 248 1 0 60 1 3 18 16 17 310 0 1 23 chain 50618 chr2 243199373 + 130577858 130578543 LTR76 689 - 7 682 58565 18 4 0 13 14 11 51 0 1 72 6 0 35 0 6 81 1 0 6 3 1 338 1 0 42 chain 10033 chr2 243199373 + 130580055 130580185 MER85 139 + 0 139 160412 11 1 0 79 0 10 39 chain 9923 chr2 243199373 + 130590479 130590593 AluY 311 + 18 132 160967 114 chain 112377 chr2 243199373 + 130590615 130591901 SVA_B 1603 + 40 1603 33566 5 0 3 396 0 39 176 0 197 8 0 42 57 4 0 640 chain 25180 chr2 243199373 + 130593140 130593453 L1MA2 4263 + 2964 3277 103846 56 0 1 31 4 3 222 chain 3275 chr2 243199373 + 130594928 130594964 L1MA6 2487 + 1878 1914 219440 36 chain 194555 chr2 243199373 + 130599300 130601531 L1PA6 6164 - 19 2248 19621 134 0 1 303 0 6 4 6 0 795 1 0 33 0 1 208 1 0 17 2 0 727 chain 8255 chr2 243199373 + 130612562 130612815 MLT1B 390 - 14 261 169652 75 131 127 13 1 0 28 1 0 4 chain 24031 chr2 243199373 + 130656508 130656803 AluSq10 312 + 8 305 110163 71 5 7 219 chain 100437 chr2 243199373 + 130657068 130658584 L1MA4 2864 + 1148 2660 36645 192 20 6 59 18 10 155 5 4 217 0 20 182 0 1 4 20 28 23 1 0 24 6 3 25 16 13 4 1 0 61 1 0 11 1 0 11 0 2 31 8 6 5 0 1 88 3 0 36 0 13 114 3 2 144 15 5 12 chain 4127 chr2 243199373 + 130699533 130699668 L1MA3 4352 - 30 130 205548 13 3 1 5 26 0 9 0 1 5 1 0 6 1 0 24 8 6 16 4 0 14 chain 26511 chr2 243199373 + 130699942 130700269 L1PA7 6471 - 2 327 98007 10 2 0 315 chain 22027 chr2 243199373 + 130712880 130713133 AluYc 301 + 46 301 120111 74 0 2 179 chain 73484 chr2 243199373 + 130719537 130720498 LTR5_Hs 974 - 0 974 46795 103 8 6 31 8 15 163 1 0 188 8 9 169 0 1 122 1 0 39 5 13 115 chain 73587 chr2 243199373 + 130721278 130722617 HERVK-int 6823 - 241 1729 46741 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 9 8 18 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 9 6 76 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 58 9 297 399 chain 60431 chr2 243199373 + 130746681 130747386 L1PA6 6164 + 5457 6162 52619 705 chain 32031 chr2 243199373 + 130749463 130749824 L1PA6 6164 - 683 1044 80815 361 chain 50779 chr2 243199373 + 130749832 130752216 L1PA6 6164 + 5535 6162 58446 247 1758 0 221 10 11 148 chain 278226 chr2 243199373 + 130756050 130759359 L1P1 4361 + 1 3281 14742 299 14 15 255 1 0 260 34 0 205 0 2 406 4 6 1474 0 1 357 chain 56432 chr2 243199373 + 130779136 130779886 L1PA8A 6298 + 5504 6290 54890 35 0 3 6 3 8 113 2 0 193 0 25 30 0 1 88 2 1 104 6 9 65 0 2 103 chain 6008 chr2 243199373 + 130794102 130794178 L1PA6 6164 + 6087 6160 185165 60 3 0 13 chain 42829 chr2 243199373 + 130803571 130804098 L1PA7 6471 - 125 647 65615 22 8 0 88 0 2 302 0 1 107 chain 9598 chr2 243199373 + 130804126 130804244 L1PA7 6471 + 6350 6468 162611 118 chain 7562 chr2 243199373 + 130816198 130816332 MST-int 1221 + 288 424 173791 21 2 0 52 22 26 37 chain 2783 chr2 243199373 + 130879222 130879273 L1PB1 5432 + 5346 5395 228971 23 3 2 20 1 0 4 chain 10425 chr2 243199373 + 130884094 130884232 MER85 139 - 0 139 158583 60 3 4 75 chain 22534 chr2 243199373 + 130904579 130904845 AluY 311 + 38 306 117873 84 0 1 9 0 1 173 chain 8210 chr2 243199373 + 130958002 130958174 LTR23 429 - 223 400 169889 7 0 1 5 1 0 35 2 5 30 29 30 12 7 8 44 chain 11740 chr2 243199373 + 130965441 130965655 MSTA 426 - 38 261 153297 18 22 9 34 10 29 25 1 0 7 5 11 19 2 0 71 chain 59647 chr2 243199373 + 130973092 130973832 L1PA7 6471 + 5740 6465 53022 220 19 7 340 1 2 149 4 0 7 chain 26127 chr2 243199373 + 130978674 130978987 AluSc 308 - 2 308 99490 41 7 0 265 chain 83703 chr2 243199373 + 130994719 130995660 L1PA4 6152 + 5198 6143 42035 105 1 5 258 1 0 403 0 1 173 chain 134969 chr2 243199373 + 131001750 131003239 L1PA3long 6157 - 0 1488 27019 1422 1 0 66 chain 6053 chr2 243199373 + 131010209 131010301 MER4A1 472 - 315 406 184790 18 9 8 65 chain 93896 chr2 243199373 + 131028285 131029359 MER11C 1089 - 10 1089 38388 479 0 1 171 4 8 420 chain 6003 chr2 243199373 + 131029910 131029982 tRNA-Gln-CAA_ 72 - 0 72 185218 72 chain 21131 chr2 243199373 + 131052488 131052776 L1PB 1623 - 180 451 123443 132 23 6 133 chain 19239 chr2 243199373 + 131052791 131053055 L1PB1 5432 + 4579 4852 129415 39 3 0 62 0 3 114 3 11 4 0 1 39 chain 21050 chr2 243199373 + 131084766 131085036 AluY 311 + 0 274 123725 46 8 11 74 1 2 141 chain 5884 chr2 243199373 + 131085672 131085741 LTR12D 1347 + 587 656 186342 69 chain 24466 chr2 243199373 + 131101044 131101332 AluSg 306 + 8 301 107728 71 0 5 217 chain 57213 chr2 243199373 + 131169852 131170604 L1PA8A 6298 + 5504 6289 54393 43 1 9 111 2 0 195 0 25 30 0 1 88 2 1 88 15 18 70 4 3 103 chain 5803 chr2 243199373 + 131184874 131184950 L1PA6 6164 + 6087 6160 187115 60 3 0 13 chain 43829 chr2 243199373 + 131194372 131194901 L1PA7 6471 - 125 647 64407 16 8 0 397 0 1 108 chain 9697 chr2 243199373 + 131194929 131195049 L1PA7 6471 + 6350 6470 162096 120 chain 3350 chr2 243199373 + 131204846 131204992 MSTA-int 1630 - 77 225 218057 32 6 5 13 77 80 18 chain 7431 chr2 243199373 + 131206913 131207047 MST-int 1221 + 288 424 174571 21 2 0 52 22 26 37 chain 81120 chr2 243199373 + 131215108 131216194 L1PA6 6164 + 5063 6161 43126 252 0 3 49 1 2 258 0 1 153 0 6 186 6 7 35 4 5 33 1 0 108 chain 27681 chr2 243199373 + 131291878 131292177 AluYg6 310 + 0 295 94113 126 4 0 169 chain 5378 chr2 243199373 + 131292931 131292997 MLT1A0 366 + 300 366 191222 66 chain 3379 chr2 243199373 + 131293579 131293620 MLT2D 439 + 380 426 217512 8 0 5 33 chain 3379 chr2 243199373 + 131342256 131342297 MLT2D 439 - 13 59 217513 33 0 5 8 chain 28430 chr2 243199373 + 131343701 131344008 AluYg6 310 - 8 310 91463 171 5 0 131 chain 23869 chr2 243199373 + 131347464 131347779 AluY 311 + 0 311 111085 30 4 0 97 5 6 116 1 0 62 chain 3505 chr2 243199373 + 131360230 131360272 MLT1B 390 + 277 319 215280 42 chain 22321 chr2 243199373 + 131367438 131367696 AluSp 311 - 42 300 118819 258 chain 24959 chr2 243199373 + 131370057 131370357 AluY 311 + 0 304 105007 47 0 6 71 4 2 178 chain 5084 chr2 243199373 + 131429351 131429558 MSTA 426 + 156 370 194236 26 129 136 52 chain 4601 chr2 243199373 + 131429623 131429747 MST-int 1221 - 797 923 199624 37 54 58 20 2 0 11 chain 8831 chr2 243199373 + 131434066 131434246 MST-int 1221 - 222 442 166487 48 6 1 9 41 48 26 0 38 50 chain 9697 chr2 243199373 + 131441611 131441731 L1PA7 6471 - 1 121 162097 120 chain 43829 chr2 243199373 + 131441759 131442288 L1PA7 6471 + 5824 6346 64406 108 0 1 391 8 0 22 chain 57091 chr2 243199373 + 131466022 131466774 L1PA8A 6298 - 9 794 54480 103 4 3 70 15 18 88 2 1 88 0 1 30 0 25 195 2 0 111 1 9 43 chain 5862 chr2 243199373 + 131479175 131479246 Tigger1 2417 + 942 1013 186572 71 chain 37318 chr2 243199373 + 131480771 131481187 L1PA5 6144 - 0 416 73062 416 chain 20621 chr2 243199373 + 131489971 131490257 AluSp 311 + 10 292 125217 9 2 1 36 4 3 75 11 9 149 chain 14186 chr2 243199373 + 131491473 131491627 SVA_E 1901 + 1745 1899 143931 154 chain 9815 chr2 243199373 + 131499729 131499863 MER57-int 2662 + 233 362 161525 82 3 0 14 2 0 33 chain 20699 chr2 243199373 + 131501684 131501960 MER57-int 2662 + 110 386 124971 71 3 8 125 3 0 15 3 1 56 chain 29426 chr2 243199373 + 131503150 131503457 AluYb8 318 + 0 307 86955 307 chain 3575 chr2 243199373 + 131507869 131507907 Tigger3c 601 - 506 544 214069 38 chain 6014 chr2 243199373 + 131527856 131527930 MER49 923 - 640 714 185098 74 chain 14686 chr2 243199373 + 131561665 131562303 L1MB2 1706 + 614 917 142305 104 24 20 21 361 40 62 7 3 29 14 8 16 chain 34225 chr2 243199373 + 131569704 131570102 L1PA6 6164 - 3 401 77316 398 chain 11081 chr2 243199373 + 131614247 131614374 L1PA4 6152 + 6013 6139 155884 7 1 0 119 chain 24965 chr2 243199373 + 131646391 131646691 AluSq2 311 + 0 297 104981 134 3 0 163 chain 13436 chr2 243199373 + 131667617 131667788 L1PA7 6471 + 6297 6470 146552 22 1 3 148 chain 4673 chr2 243199373 + 131679605 131679660 LTR24B 570 - 0 55 198836 55 chain 27406 chr2 243199373 + 131698131 131698433 AluYc3 301 + 0 300 94948 121 2 0 179 chain 192712 chr2 243199373 + 131709912 131712129 L1PA6 6164 + 3929 6162 19795 435 0 8 307 2 1 337 0 1 300 5 9 685 0 4 146 chain 72250 chr2 243199373 + 131713727 131714535 L1PA3long 6157 + 5331 6147 47357 584 0 2 140 1 7 83 chain 4704 chr2 243199373 + 131717749 131717804 Tigger3c 601 - 369 425 198484 38 0 1 17 chain 23667 chr2 243199373 + 131728962 131729252 AluSg 306 + 11 304 112216 24 0 1 237 0 2 29 chain 22760 chr2 243199373 + 131744874 131745283 LTR12F 595 - 0 595 116782 19 3 2 84 81 100 25 0 1 93 1 25 11 1 144 91 chain 119846 chr2 243199373 + 131748837 131750273 LTR12C 1709 + 0 1709 31106 240 0 2 194 0 1 213 0 278 184 1 0 5 3 1 106 0 4 332 9 0 149 chain 87414 chr2 243199373 + 131777766 131778749 L1PA4 6152 - 1 990 40600 6 0 2 304 2 0 407 0 3 127 0 3 137 chain 43749 chr2 243199373 + 131778749 131779229 L1PA4 6152 + 4686 5166 64294 480 chain 23960 chr2 243199373 + 131840656 131840953 AluSc5 308 + 10 307 110570 297 chain 28709 chr2 243199373 + 131844356 131844658 AluYf4 310 + 0 302 90300 302 chain 23800 chr2 243199373 + 131846538 131846827 AluSp 311 - 12 300 111479 29 6 5 254 chain 23016 chr2 243199373 + 131851517 131851815 AluSq2 311 - 12 311 115551 6 2 0 164 3 7 11 1 0 111 chain 26031 chr2 243199373 + 131853192 131853496 AluSp 311 + 1 308 99896 90 0 3 214 chain 13306 chr2 243199373 + 131870542 131871055 MER21B 843 + 614 830 147061 7 0 1 81 317 26 13 4 0 67 3 0 21 chain 38864 chr2 243199373 + 131871995 131872513 THE1B-int 1605 - 983 1571 70929 162 1 65 114 14 20 227 chain 21564 chr2 243199373 + 131878839 131879118 AluSp 311 - 23 310 121907 29 0 7 199 8 9 43 chain 32158 chr2 243199373 + 131924673 131925415 L1PA8 5853 - 0 446 80599 84 10 9 19 2 1 47 0 1 13 8 7 13 0 2 48 2 0 45 1 0 78 293 0 79 chain 13596 chr2 243199373 + 131939654 131939809 L1PA4 6152 + 5996 6151 145988 155 chain 252211 chr2 243199373 + 131941988 131944810 L1PA4 6152 + 3322 6152 16120 277 0 9 1686 1 0 523 0 1 80 1 0 254 chain 10425 chr2 243199373 + 131969808 131969946 MER85 139 + 0 139 158582 75 3 4 60 chain 20507 chr2 243199373 + 131970537 131970789 AluSq10 312 - 16 268 125610 252 chain 24360 chr2 243199373 + 131977031 131977325 AluY 311 + 0 298 108316 47 0 6 70 1 0 10 1 0 165 chain 17627 chr2 243199373 + 132016431 132016692 THE1D 372 + 78 338 133914 88 28 28 61 1 0 83 chain 81916 chr2 243199373 + 132026428 132027514 L1PA6 6164 - 3 1101 42798 109 1 0 32 4 5 35 6 7 186 0 6 153 0 1 258 1 2 51 0 3 250 chain 7562 chr2 243199373 + 132036284 132036418 MST-int 1221 - 797 933 173792 37 22 26 52 2 0 21 chain 8549 chr2 243199373 + 132040715 132040892 MST-int 1221 - 222 439 168024 48 6 1 9 41 48 26 0 38 47 chain 9606 chr2 243199373 + 132048309 132048428 L1PA7 6471 - 2 121 162566 119 chain 42710 chr2 243199373 + 132048456 132048981 L1PA7 6471 + 5824 6346 65762 107 0 1 302 0 2 40 0 2 46 8 0 22 chain 54664 chr2 243199373 + 132072648 132073371 L1PA8A 6298 - 19 794 55928 72 1 0 20 0 2 72 0 3 101 3 12 79 0 1 15 0 7 8 0 25 195 6 4 107 1 9 43 chain 8954 chr2 243199373 + 132098405 132098520 L1PA7 6471 - 7 122 165857 115 chain 41848 chr2 243199373 + 132098520 132099040 L1PA7 6471 + 5815 6340 66833 157 0 1 226 0 4 137 chain 535679 chr2 243199373 + 132099056 132105238 L1PA4 6152 - 0 6152 3492 146 4 5 318 0 1 3651 0 9 176 0 5 159 34 5 440 0 1 400 23 6 254 1 0 576 chain 50421 chr2 243199373 + 132109063 132111449 L1PA6 6164 - 2 637 58695 122 0 3 23 10 11 210 1755 0 266 chain 32208 chr2 243199373 + 132111449 132111810 L1PA6 6164 + 5120 5481 80510 361 chain 58349 chr2 243199373 + 132113899 132114600 L1PA6 6164 - 2 707 53777 393 7 10 219 0 1 82 chain 29257 chr2 243199373 + 132117352 132117882 MLT2A2 560 - 0 560 87754 8 0 4 42 87 100 120 1 0 54 27 42 10 11 10 170 chain 507261 chr2 243199373 + 132131384 132137014 L1PA3long 6157 + 0 6157 6382 94 0 526 825 0 1 1244 0 1 927 0 3 1423 7 2 835 0 1 275 chain 6134 chr2 243199373 + 132143132 132143204 tRNA-Gln-CAA_ 72 + 0 72 184143 72 chain 18274 chr2 243199373 + 132159527 132159756 L1PA4 6152 + 5927 6143 132140 191 13 0 25 chain 9980 chr2 243199373 + 132162221 132162393 MER1A 529 - 1 175 160678 66 35 37 71 chain 82752 chr2 243199373 + 132193795 132194733 L1PA4 6152 - 12 954 42437 832 1 5 105 chain 59901 chr2 243199373 + 132215808 132216549 L1PA7 6471 - 6 731 52875 6 4 0 492 19 7 220 chain 11728 chr2 243199373 + 132223983 132224201 MSTA 426 + 165 388 153355 71 2 0 19 5 11 7 1 0 25 10 29 34 26 9 18 chain 3786 chr2 243199373 + 132308460 132308650 L1MB8 1703 + 1518 1625 210568 6 1 0 40 125 43 18 chain 56761 chr2 243199373 + 132309806 132310591 L1PB1 5432 - 667 1471 54681 61 1 3 13 2 1 57 1 0 17 0 4 63 1 0 93 16 14 108 0 18 41 7 7 304 chain 41949 chr2 243199373 + 132318966 132319423 L1PA2 6032 - 0 454 66686 5 3 0 449 chain 322575 chr2 243199373 + 132371510 132375170 L1PA3long 6157 - 10 3608 12499 179 1 0 1233 1 0 168 1 0 199 2 4 1377 69 8 430 chain 3316 chr2 243199373 + 132374705 132374740 L1PA3long 6157 - 3128 3163 216921 35 chain 84358 chr2 243199373 + 132389075 132390160 L1PA4 6152 - 1 1103 41767 378 0 6 153 0 1 264 0 1 38 0 5 22 1 5 229 chain 29805 chr2 243199373 + 132394812 132395210 L1P2 5180 - 2812 3210 85419 238 1 0 5 0 1 10 0 3 6 11 8 127 chain 3515 chr2 243199373 + 132411117 132411156 HY3 101 + 61 100 215140 39 chain 24909 chr2 243199373 + 132426387 132426944 LTR4 552 - 0 510 105283 88 1 0 13 49 65 10 2 1 47 81 10 116 9 8 13 1 0 21 0 3 44 4 0 6 31 44 21 chain 87140 chr2 243199373 + 132438408 132439395 L1P1 4361 + 2508 3493 40717 669 1 0 206 1 0 110 chain 19776 chr2 243199373 + 132447382 132447645 L1PA8A 6298 - 158 421 127889 160 0 6 6 7 1 90 chain 229695 chr2 243199373 + 132450940 132453451 L1PA3long 6157 + 3638 6157 17321 718 0 1 349 0 7 986 1 0 453 0 1 4 chain 3989 chr2 243199373 + 132459737 132459784 MER4A1 472 - 0 47 207554 47 chain 103481 chr2 243199373 + 132459796 132460998 L1PA5 6144 + 4921 6128 35872 172 1 0 182 0 4 530 2 3 156 16 17 143 chain 13436 chr2 243199373 + 132463002 132463226 Tigger4a 237 - 3 227 146554 163 44 44 17 chain 83357 chr2 243199373 + 132478772 132479795 LTR5A 1029 + 0 1029 42176 74 0 6 70 1 0 621 2 1 47 1 2 163 11 12 33 chain 5470 chr2 243199373 + 132535059 132535157 L1MA3 4352 + 4240 4332 190296 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 42069 chr2 243199373 + 132543472 132543964 LTR15 485 + 0 485 66535 343 8 0 118 0 2 18 1 0 4 chain 93692 chr2 243199373 + 132571817 132572837 L1PA2 6032 - 4 1027 38331 754 0 3 266 chain 103738 chr2 243199373 + 132572837 132573958 L1HS 6032 + 707 1828 35787 1121 chain 39604 chr2 243199373 + 132576386 132576885 L1P1 4361 - 3848 4358 69886 257 2 13 240 chain 5226 chr2 243199373 + 132578677 132578775 L1MA3 4352 - 20 112 192763 4 1 0 11 1 0 29 1 0 6 1 0 23 7 5 14 chain 3863 chr2 243199373 + 132598083 132598126 Tigger3c 601 + 321 364 209413 43 chain 97806 chr2 243199373 + 132608013 132609730 THE1B-int 1605 - 6 1605 37334 259 10 8 83 50 218 353 2 0 54 5 2 117 4 7 26 0 3 5 7 32 30 0 1 95 1 0 4 1 2 39 321 16 141 6 0 86 6 6 12 chain 11165 chr2 243199373 + 132617613 132617777 L1PA8 5853 - 0 158 155570 86 8 7 18 1 0 33 4 0 14 chain 6602 chr2 243199373 + 132627452 132627564 HERVL-int 5654 + 0 113 180436 55 24 25 33 chain 10494 chr2 243199373 + 132627574 132627694 HSMAR1 1287 + 1167 1287 158274 120 chain 3076 chr2 243199373 + 132628132 132628170 L1MA5 2750 - 129 168 223383 9 0 1 29 chain 28639 chr2 243199373 + 132641409 132641829 L1PA8 5853 + 5435 5850 90562 42 0 1 64 1 0 4 5 6 12 1 0 17 0 1 27 5 3 66 20 18 44 2 1 19 1 0 90 chain 18429 chr2 243199373 + 132645651 132645900 L1PA10 4194 + 3917 4161 131694 165 2 1 33 3 0 34 1 0 11 chain 75199 chr2 243199373 + 132658819 132659836 MER11A 1151 - 0 1151 45922 92 1 2 69 4 5 11 1 0 34 2 3 14 0 1 58 19 54 269 0 1 94 15 16 134 4 0 64 1 0 59 1 100 71 chain 6708 chr2 243199373 + 132665129 132665225 L1MB3 1562 + 1281 1376 179624 70 5 4 21 chain 13428 chr2 243199373 + 132665544 132665829 L1PB1 5432 + 5162 5421 146585 6 2 0 44 1 0 8 2 1 15 1 0 43 4 3 14 1 0 6 16 6 19 7 4 17 2 0 22 1 0 21 5 4 9 2 0 17 chain 263300 chr2 243199373 + 132684420 132688034 L1PB1 5432 + 1738 5391 15521 37 1 3 59 5 0 900 0 1 81 1 0 6 0 1 277 6 9 49 0 16 38 1 0 353 7 12 147 10 5 4 0 1 21 0 1 214 0 1 20 4 5 45 4 5 295 1 0 4 0 1 265 8 9 423 0 1 5 1 0 11 0 5 35 1 2 8 1 0 25 26 20 11 2 0 12 2 0 39 2 41 20 1 0 15 3 0 15 9 0 11 31 28 20 1 0 21 chain 19338 chr2 243199373 + 132693122 132693474 THE1A 353 - 0 353 129116 37 6 10 123 31 33 33 17 15 17 17 14 71 chain 119420 chr2 243199373 + 132693474 132695108 THE1A-int 1579 - 0 1567 31257 9 0 1 34 0 1 179 9 10 428 0 2 409 6 4 60 0 2 83 13 17 168 1 2 19 88 10 96 0 1 32 chain 3372 chr2 243199373 + 132694942 132694980 THE1A-int 1579 - 19 57 208797 38 chain 6893 chr2 243199373 + 132724340 132724459 LTR12D 1347 + 503 772 178238 29 8 76 16 0 82 8 0 1 20 1 0 37 chain 35484 chr2 243199373 + 132759122 132759522 L1PA4 6152 - 1 409 75579 198 0 8 202 chain 19269 chr2 243199373 + 132810537 132810834 THE1B 368 + 6 327 129322 38 0 15 110 1 0 29 35 45 84 chain 532158 chr2 243199373 + 132820455 132826589 L1PA3long 6157 - 5 6151 3945 155 0 1 399 0 1 209 1 3 92 0 4 390 0 1 105 0 1 1102 1 0 1447 0 1 773 0 1 978 0 1 482 chain 13299 chr2 243199373 + 132836518 132836670 L1PA4 6152 + 5994 6146 147080 152 chain 83798 chr2 243199373 + 132876363 132877396 MER11C 1089 + 0 1051 41990 246 0 9 61 1 5 63 2 1 169 0 1 137 0 4 41 0 1 313 chain 230255 chr2 243199373 + 132882739 132885378 L1PA5 6144 - 7 2646 17293 431 1 0 187 0 2 897 1 0 132 0 1 805 1 0 184 chain 23383 chr2 243199373 + 132886192 132886563 L1PA8 5853 - 0 364 113745 92 4 3 14 1 0 39 29 27 70 3 1 43 8 7 68 chain 71098 chr2 243199373 + 132886581 132887847 L1P3 4156 + 3123 4107 47890 277 0 4 112 16 32 18 5 7 5 0 1 30 306 0 116 0 1 381 chain 168762 chr2 243199373 + 132899539 132902473 HERVIP10F-int 4088 - 1124 3889 22192 203 0 11 285 1 2 5 1 0 83 17 0 14 4 21 16 2 1 12 2 1 77 1 0 148 1 0 20 1 0 403 23 19 23 10 9 32 3 0 30 1 0 19 7 5 63 1 0 29 1 0 24 1 0 6 6 5 6 1 0 17 19 12 4 1 0 13 4 0 39 1 0 98 1 0 41 1 0 14 1 0 22 8 5 24 3 1 5 1 0 5 1 0 5 1 0 21 1 0 11 2 0 37 5 4 30 1 0 7 4 1 4 1 0 21 1 0 4 33 23 16 1 0 11 1 0 26 1 0 5 1 0 60 1 0 6 1 0 33 8 5 48 1 0 6 2 0 28 1 0 7 1 0 21 1 0 13 2 1 10 1 0 9 15 13 5 1 0 33 1 0 31 1 0 18 20 15 14 3 0 11 3 1 4 1 0 16 3 2 14 1 0 7 1 0 6 23 12 31 2 0 15 6 0 3 1 0 9 92 53 20 1 0 12 3 1 7 3 0 12 32 23 13 1 0 4 8 4 11 chain 88461 chr2 243199373 + 132932593 132933615 LTR5B 1012 - 0 1012 40200 182 0 4 676 14 0 150 chain 20923 chr2 243199373 + 132946007 132946272 AluY 311 + 0 272 124198 63 1 9 6 2 0 48 0 1 145 chain 220484 chr2 243199373 + 132957413 132959877 L1PA3long 6157 + 3672 6157 17849 226 0 19 1393 0 4 718 0 1 119 3 0 5 chain 81953 chr2 243199373 + 132977957 132978887 SVA_D 2077 + 55 1335 42784 498 0 2 136 0 40 147 0 310 32 2 0 115 chain 33312 chr2 243199373 + 132978904 132979386 SVA_F 1814 + 893 1291 78715 53 1 16 230 98 0 82 1 0 17 chain 7180 chr2 243199373 + 132979188 132979286 SVA_F 1814 + 903 1016 96672 44 0 15 54 chain 85204 chr2 243199373 + 132979452 132980424 SVA_E 1901 + 971 1901 41451 124 1 0 12 41 0 794 chain 2281 chr2 243199373 + 132979601 132979630 SVA_E 1901 + 944 981 78665 12 4 0 11 0 12 2 chain 526945 chr2 243199373 + 132988900 132994855 L1PA3long 6157 + 0 6154 4508 153 0 1 100 1 2 324 0 4 193 1 129 2608 0 1 372 1 0 1268 0 65 934 chain 49843 chr2 243199373 + 133017457 133018017 L1PA3long 6157 - 0 560 59126 560 chain 26078 chr2 243199373 + 133057992 133058367 L1PB 1623 - 156 548 99713 13 6 4 16 0 1 124 3 0 16 0 20 38 11 12 148 chain 58506 chr2 243199373 + 133061063 133061735 L1PA4 6152 - 1 685 53697 94 1 12 80 1 0 4 0 1 147 0 1 345 chain 8742 chr2 243199373 + 133063069 133063181 AluY 311 + 5 133 166959 38 1 14 66 0 3 7 chain 5786 chr2 243199373 + 133072839 133072907 THE1B 368 - 300 368 187317 68 chain 24399 chr2 243199373 + 133115544 133115809 AluY 311 + 36 303 108076 78 0 1 11 0 1 176 chain 58507 chr2 243199373 + 133116431 133117076 L1PA3long 6157 - 0 645 53696 645 chain 181256 chr2 243199373 + 133121634 133124079 L1PA8 5853 + 987 5853 20874 30 1 0 254 29 8 182 6 9 436 0 2 118 14 12 229 12 16 188 1 3 158 0 2436 9 0 1 15 0 1 470 1 0 45 2 0 61 35 36 28 8 7 19 1 0 93 chain 27420 chr2 243199373 + 133126287 133126600 L1PA5 6144 - 7 320 94905 313 chain 14025 chr2 243199373 + 133138131 133138332 MER44B 551 + 292 512 144483 146 7 22 12 2 0 9 0 6 25 chain 24954 chr2 243199373 + 133140995 133141270 AluYa5 310 - 0 275 105036 275 chain 153282 chr2 243199373 + 133145060 133147295 L1PB1 5432 - 5 2163 24190 5 2 0 18 1 0 13 1 0 21 1 0 25 2 0 14 1 0 4 2 0 15 14 7 5 2 0 4 1 0 16 1 0 43 1 0 16 2 1 52 18 12 10 1 0 8 1 0 24 42 19 266 19 25 6 0 2 4 0 1 86 0 2 76 2 0 44 31 15 103 8 0 110 0 2 142 1 0 104 0 6 134 0 2 49 0 1 5 0 1 153 44 33 399 8 0 55 chain 30997 chr2 243199373 + 133159536 133159915 L1PA8A 6298 + 5912 6289 82519 273 2 0 104 chain 6673 chr2 243199373 + 133164338 133164420 U6 107 - 14 96 179878 82 chain 5275 chr2 243199373 + 133169065 133169257 MER33 330 - 94 284 192257 34 10 11 34 1 0 4 85 83 24 chain 3161 chr2 243199373 + 133196231 133196267 MER58C 217 + 166 202 221737 36 chain 486107 chr2 243199373 + 133210054 133215834 L1PA6 6164 - 3 6160 7520 7 2 0 322 1 0 58 1 0 3 1 0 434 3 4 291 0 1 132 3 2 1032 0 1 682 0 2 386 0 2 259 0 3 215 3 2 1058 0 1 151 20 390 156 1 0 48 0 2 279 0 2 232 chain 107887 chr2 243199373 + 133255684 133257383 L1PB1 5432 - 10 1698 34759 13 27 25 14 1 0 24 2 0 14 1 0 5 3 1 13 28 17 11 2 6 42 1 0 16 2 1 33 35 32 8 1 0 13 1 0 17 14 14 20 0 4 251 13 21 38 0 1 12 0 1 134 3 0 12 9 13 48 0 3 56 0 1 141 1 0 201 0 7 72 54 34 5 0 2 76 0 5 163 1 0 48 chain 15553 chr2 243199373 + 133270859 133271044 AluYc 301 + 92 280 139719 18 0 1 9 0 2 158 chain 64543 chr2 243199373 + 133284520 133286429 L1PA8 5853 - 0 1920 10713 93 1 0 19 2 1 50 1 0 11 1 0 4 5 16 48 6 4 43 1 0 477 1 2 62 0 1 15 0 1 83 0 21 15 25 10 46 0 1 619 0 1 5 0 1 4 18 12 228 0 1 26 chain 542201 chr2 243199373 + 133286454 133292573 L1PA4 6152 + 0 6152 2470 180 0 11 137 0 3 901 6 4 451 0 2 1005 0 5 514 0 1 33 0 4 152 0 1 105 1 0 772 0 1 591 0 4 427 0 4 844 chain 109070 chr2 243199373 + 133292579 133295805 L1PA8 5853 - 1928 5189 10713 156 0 11 258 0 3 103 0 1 172 4 0 224 2 0 11 1 0 78 6 1 36 0 2 75 0 1 167 1 4 363 0 1 237 1 0 361 0 1 244 8 2 40 0 31 141 6 5 342 15 16 174 chain 35629 chr2 243199373 + 133300620 133301079 MER61D 487 - 0 487 75369 10 1 0 145 3 1 32 0 31 268 chain 4310 chr2 243199373 + 133303349 133303401 MER5A1 166 - 74 126 203099 52 chain 2983 chr2 243199373 + 133321419 133321479 MER5B 177 - 3 77 225383 30 10 27 12 3 0 5 chain 71510 chr2 243199373 + 133322972 133323747 L1PA2 6032 - 0 775 47693 775 chain 35115 chr2 243199373 + 133348333 133349214 MLT2A2 560 + 0 560 76033 58 40 26 85 373 48 124 0 7 51 3 14 147 chain 30353 chr2 243199373 + 133348542 133348860 AluYb8 318 + 0 318 83768 318 chain 21970 chr2 243199373 + 133358022 133358351 L1MA5 2750 + 25 367 120353 17 4 8 23 13 25 179 1 0 50 2 0 40 chain 111976 chr2 243199373 + 133456916 133458188 L1PA5 6144 - 12 1290 33674 834 1 5 43 0 2 394 chain 21231 chr2 243199373 + 133489759 133490018 L1PA5 6144 + 5878 6144 123099 104 2 9 153 chain 18518 chr2 243199373 + 133492806 133493179 MSTB 430 + 30 430 131449 58 32 33 18 4 17 45 5 12 19 36 37 24 1 0 7 6 11 60 0 1 58 chain 14637 chr2 243199373 + 133529586 133529770 Tigger3b 1229 + 971 1155 142468 184 chain 390287 chr2 243199373 + 133563408 133568777 L1PB1 5432 - 45 5406 10444 17 1 0 24 2 0 14 14 11 24 31 18 42 1 0 16 2 1 51 2 0 11 16 11 9 1 0 23 5 0 8 1 4 83 4 6 180 25 30 183 3 0 129 6 7 142 0 13 161 1 0 170 1 2 41 1 0 223 2 5 294 0 2 372 12 10 208 3 0 334 8 0 17 1 0 245 0 1 235 23 0 8 5 28 187 0 2 48 0 1 130 0 5 183 12 5 7 5 0 4 2 0 7 1 0 338 0 13 288 1 0 92 0 1 62 1 5 42 33 34 114 6 4 111 0 1 5 1 0 4 3 4 63 0 4 10 14 14 160 chain 6487 chr2 243199373 + 133668201 133668280 L1MA2 4263 - 205 284 181346 79 chain 5466 chr2 243199373 + 133683158 133683313 MER1B 344 - 201 344 190340 30 3 0 21 19 11 18 41 40 23 chain 6640 chr2 243199373 + 133688763 133688847 MER57A1 433 + 0 84 180167 84 chain 40651 chr2 243199373 + 133713028 133713523 L1PA8 5853 - 292 790 68369 13 5 8 477 chain 3048 chr2 243199373 + 133715013 133715078 MIR 256 + 79 145 224024 13 19 20 33 chain 14068 chr2 243199373 + 133723211 133723412 Tigger3a 397 - 45 258 144327 93 22 34 86 chain 3900 chr2 243199373 + 133733675 133733727 L1MA6 2487 + 2339 2388 208839 39 3 0 10 chain 18543 chr2 243199373 + 133828833 133829046 AluYa5 310 + 97 301 131382 197 9 0 7 chain 4952 chr2 243199373 + 133846191 133846264 MER20B 722 - 28 100 195687 25 2 1 46 chain 2677 chr2 243199373 + 133850075 133850128 MER6B 211 - 0 54 230458 11 11 12 31 chain 23724 chr2 243199373 + 133869770 133870059 AluY 311 + 5 295 111909 121 1 2 167 chain 4241 chr2 243199373 + 133877045 133877110 L1MA4 2864 + 2746 2809 203993 17 1 0 5 2 1 40 chain 50685 chr2 243199373 + 133886668 133887236 L1PA4 6152 - 0 568 58515 568 chain 23398 chr2 243199373 + 133889593 133889875 AluSg7 307 + 14 297 113662 117 0 1 165 chain 40076 chr2 243199373 + 133895326 133895820 LTR10D 510 - 0 510 69217 212 4 9 26 0 1 167 1 0 12 0 11 72 chain 14872 chr2 243199373 + 133902858 133903078 L1PA8 5853 + 5637 5853 141708 45 1 0 9 15 14 35 2 1 19 1 0 93 chain 5339 chr2 243199373 + 133931006 133931132 MER31B 477 + 104 245 191651 31 52 67 43 chain 321904 chr2 243199373 + 133945768 133949497 L1PA5 6144 + 2393 6140 12525 146 1 0 796 0 1 613 0 11 669 0 5 278 2 1 381 2 0 31 12 13 311 1 4 62 0 2 271 1 0 152 chain 149243 chr2 243199373 + 133959416 133961124 L1PA5 6144 + 4441 6144 24723 448 1 0 405 2 0 841 2 0 9 chain 6718 chr2 243199373 + 133993851 133993950 MER82 654 - 533 647 179552 54 7 22 38 chain 8810 chr2 243199373 + 133994526 133994629 L1PA5 6144 + 6040 6143 166600 103 chain 4101 chr2 243199373 + 134028803 134028891 MER51A 677 + 586 677 205934 28 28 31 32 chain 6092 chr2 243199373 + 134056523 134056598 L1PA5 6144 + 6060 6132 184478 26 3 0 46 chain 270882 chr2 243199373 + 134057442 134060350 L1HS 6032 + 3103 6016 15145 25 1 6 2882 chain 29328 chr2 243199373 + 134066261 134066581 AluYb8 318 - 0 318 87402 104 3 1 213 chain 13503 chr2 243199373 + 134131578 134131809 L1MC1 2226 + 1724 1948 146352 108 21 22 13 1 0 20 13 7 24 1 0 30 chain 531011 chr2 243199373 + 134140643 134146749 L1PA5 6144 - 4 6144 4079 334 0 1 504 0 4 18 0 4 64 0 1 453 0 1 298 0 6 99 0 4 1069 0 1 109 1 0 690 0 1 127 0 2 44 1 0 112 0 1 621 1 4 530 4 5 163 0 2 189 0 3 89 6 7 580 chain 6468 chr2 243199373 + 134221812 134221891 Tigger7 736 - 312 391 181494 79 chain 549131 chr2 243199373 + 134222578 134228609 L1PA2 6032 - 0 6032 1564 1913 0 1 1703 0 1 2158 1 0 256 chain 2483 chr2 243199373 + 134231019 134231045 MER5A 189 - 73 99 233281 26 chain 541680 chr2 243199373 + 134304436 134310329 L1PA2 6032 + 1 6032 2561 2421 0 135 5 1 0 487 1 0 1185 0 4 187 0 1 1606 chain 17093 chr2 243199373 + 134335093 134335286 L1PA4 6152 - 3 197 135336 60 0 1 133 chain 20002 chr2 243199373 + 134353661 134353900 7SK 245 + 0 239 127138 239 chain 3874 chr2 243199373 + 134354833 134354914 MER5A 189 + 83 165 209244 32 24 25 25 chain 455146 chr2 243199373 + 134371858 134376884 L1PA3long 6157 + 1130 6156 8573 1196 2 1 3806 0 1 22 chain 55591 chr2 243199373 + 134385573 134386277 L1PA10 4194 + 3445 4150 55366 570 0 5 77 11 10 9 3 0 34 chain 10281 chr2 243199373 + 134414378 134414641 L1PB1 5432 - 19 263 159231 9 1 0 9 0 3 22 1 0 11 27 0 6 4 26 13 1 0 4 29 18 11 1 0 44 7 6 9 3 2 51 chain 4582 chr2 243199373 + 134420166 134420249 MADE1 96 - 0 96 199839 30 19 31 4 0 1 30 chain 29273 chr2 243199373 + 134420555 134420863 AluYb8 318 + 0 308 87679 308 chain 28631 chr2 243199373 + 134460272 134460572 AluYa5 310 - 10 310 90604 300 chain 41912 chr2 243199373 + 134485363 134485880 L1PA5 6144 - 209 731 66742 243 7 13 5 2 0 125 0 1 135 chain 15257 chr2 243199373 + 134485880 134486055 L1PA5 6144 + 5939 6114 140610 175 chain 3229 chr2 243199373 + 134489360 134489394 MLT2B2 565 - 8 42 220449 34 chain 26046 chr2 243199373 + 134498697 134499065 THE1A 353 - 0 353 99843 139 3 0 5 18 7 92 2 1 109 chain 128219 chr2 243199373 + 134499073 134500645 THE1A-int 1579 - 5 1579 28518 70 0 1 840 1 0 5 0 1 11 2 2 138 4 3 247 1 2 156 0 1 97 chain 25594 chr2 243199373 + 134500645 134500997 THE1A 353 - 0 353 101754 136 3 0 8 0 3 96 1 0 25 13 15 70 chain 58432 chr2 243199373 + 134504248 134504945 L1PA7 6471 - 1 706 53727 83 2 3 62 0 1 4 2 1 168 3 10 373 chain 79903 chr2 243199373 + 134521936 134522866 L1PA7 6471 + 5536 6469 43639 85 0 3 86 1 0 153 0 1 605 chain 4062 chr2 243199373 + 134538870 134538982 HAL1-2a_MD 234 - 109 234 206469 10 14 0 3 3 0 8 3 0 7 6 0 20 0 42 16 3 0 19 chain 52017 chr2 243199373 + 134543120 134543805 L1PA8 5853 + 5162 5847 57615 402 6 5 39 2 0 70 2 1 11 4 0 4 1 0 46 2 1 19 3 2 43 0 11 31 chain 48578 chr2 243199373 + 134567481 134568014 L1PA4 6152 + 5613 6146 60052 533 chain 45487 chr2 243199373 + 134571597 134572151 MER41A 554 - 0 554 62509 554 chain 76608 chr2 243199373 + 134610006 134610973 THE1B-int 1605 + 0 996 45157 107 0 3 320 0 25 276 4 5 260 chain 7752 chr2 243199373 + 134610982 134611070 THE1B 368 + 268 356 172594 88 chain 59088 chr2 243199373 + 134639516 134640253 L1PA7 6471 + 5735 6468 53338 59 1 0 4 0 1 126 8 2 237 0 4 130 1 2 158 3 0 10 chain 33658 chr2 243199373 + 134651509 134651947 LTR2 463 + 1 440 78157 380 16 18 12 1 0 29 chain 166668 chr2 243199373 + 134653588 134655605 Harlequin-int 5206 + 150 2172 22438 138 1 0 6 6 0 12 1 0 76 4 0 103 1 0 101 0 7 89 1 0 120 7 10 53 0 2 111 0 4 581 3 2 141 0 5 449 1 0 12 chain 32315 chr2 243199373 + 134655702 134656150 LTR2 463 + 0 447 80344 96 0 4 121 5 0 151 25 26 13 1 0 36 chain 556191 chr2 243199373 + 134668059 134674078 L1PA2 6032 + 8 6032 702 3587 0 1 405 0 3 1178 0 4 841 3 0 5 chain 22385 chr2 243199373 + 134684289 134684548 AluY 311 + 36 295 118560 259 chain 48794 chr2 243199373 + 134696546 134697106 L1PA4 6152 + 5581 6141 59879 560 chain 7810 chr2 243199373 + 134741193 134741294 MSTB 430 - 57 163 172249 67 1 6 33 chain 20330 chr2 243199373 + 134776060 134776329 AluSp 311 + 12 273 126139 113 13 5 143 chain 4128 chr2 243199373 + 134795004 134795106 MLT1D 503 - 19 141 205536 40 41 61 21 chain 541786 chr2 243199373 + 134800350 134806472 L1PA4 6152 + 25 6151 2547 1696 0 1 234 0 1 186 0 1 653 0 1 1484 1 0 1763 0 1 105 chain 421925 chr2 243199373 + 134817838 134824418 L1PA4 6152 + 0 4924 9490 366 7 6 807 1 0 154 3 1 1463 0 1 272 1647 0 101 1 0 514 0 4 501 8 0 272 1 0 462 chain 136638 chr2 243199373 + 134820947 134822548 SVA_D 2077 + 0 2075 26705 13 1 0 12 1 0 106 0 1 432 0 40 157 0 40 115 1 138 66 4 209 23 0 49 53 1 2 213 2 0 365 0 5 36 chain 87340 chr2 243199373 + 134824418 134825384 L1PA4 6152 + 5177 6143 40486 966 chain 16657 chr2 243199373 + 134834682 134834898 L1PA16 3655 + 3379 3592 136520 36 0 1 162 3 0 8 1 0 6 chain 34579 chr2 243199373 + 134862797 134863267 L1PA8 5853 + 5388 5853 76782 55 0 1 120 1 0 44 2 0 17 9 10 43 20 18 46 1 0 18 1 0 93 chain 113975 chr2 243199373 + 134866040 134867484 LTR12C 1709 - 0 1709 33101 84 8 7 390 11 4 106 1 158 112 0 118 265 0 1 182 14 9 9 0 2 262 chain 21031 chr2 243199373 + 134915086 134915389 MER1A 529 - 0 303 123807 50 23 22 6 3 0 49 0 3 28 6 7 138 chain 4299 chr2 243199373 + 134936108 134936158 LTR33A 529 - 419 469 203238 50 chain 4611 chr2 243199373 + 134948831 134948925 MSTD 398 + 4 102 199499 40 0 3 5 26 27 23 chain 9349 chr2 243199373 + 134954228 134954418 MER30 238 + 0 229 163806 12 17 24 54 7 39 68 16 16 16 chain 315713 chr2 243199373 + 134966770 134970130 L1HS 6032 - 11 3371 12778 3360 chain 2566 chr2 243199373 + 134973289 134973484 L1ME3A 1206 - 332 525 232252 16 152 150 27 chain 51206 chr2 243199373 + 134978645 134979455 MER4E 760 - 0 760 58184 362 13 17 10 24 10 65 5 7 113 22 25 26 1 0 45 84 39 23 0 1 17 chain 3054 chr2 243199373 + 134982855 134982917 MER5A1 166 + 37 110 223937 33 14 25 15 chain 48503 chr2 243199373 + 135052128 135052709 LTR10C 591 + 10 591 60108 181 12 10 307 0 2 81 chain 156950 chr2 243199373 + 135089410 135091165 L1PA3long 6157 + 4419 6157 23731 117 22 0 774 0 4 378 0 1 464 chain 4413 chr2 243199373 + 135155633 135155702 Tigger4a 237 - 0 221 201766 46 0 154 15 2 0 6 chain 2879 chr2 243199373 + 135181342 135181375 MIRb 242 + 159 192 227378 33 chain 5858 chr2 243199373 + 135182697 135182828 L1MEf 1413 + 771 896 186602 34 2 0 31 40 36 24 chain 42043 chr2 243199373 + 135245705 135246297 MLT2A2 560 + 0 560 66571 98 69 0 29 0 26 253 0 11 143 chain 13615 chr2 243199373 + 135258149 135258604 L1MA5A 2387 + 2003 2380 145917 5 3 0 24 2 1 38 4 0 37 1 0 29 123 101 55 87 42 5 1 0 35 1 0 5 chain 24296 chr2 243199373 + 135277008 135277312 AluY 311 + 8 302 108672 279 7 0 10 3 0 5 chain 49346 chr2 243199373 + 135346814 135347437 MER41B 635 + 6 635 59491 119 1 2 384 0 1 35 1 6 19 1 0 63 chain 10891 chr2 243199373 + 135348063 135348357 MER41A 554 - 0 294 68032 16 1 0 242 0 1 35 chain 41024 chr2 243199373 + 135348357 135348899 MER61E 571 + 0 571 67867 75 3 0 7 0 13 397 20 39 40 chain 9521 chr2 243199373 + 135348910 135349167 MER41A 554 - 295 554 68032 58 15 16 87 4 5 93 chain 263667 chr2 243199373 + 135352701 135355692 L1PA5 6144 - 16 3013 15500 140 1 0 103 1 0 590 0 4 921 7 5 16 0 2 1098 0 4 114 chain 6939 chr2 243199373 + 135358127 135358215 MSTC 436 + 19 107 177894 88 chain 24066 chr2 243199373 + 135377823 135378125 AluSp 311 - 9 310 109949 156 4 5 21 2 0 119 chain 558436 chr2 243199373 + 135408124 135414144 L1PA2 6032 - 16 6032 460 51 4 0 5965 chain 7585 chr2 243199373 + 135415002 135415090 L1PA16 3655 + 3483 3571 173638 88 chain 3485 chr2 243199373 + 135488218 135488262 MLT1B 390 + 0 44 215590 44 chain 156637 chr2 243199373 + 135489573 135491768 L1PB1 5432 - 14 2182 23780 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 16 8 0 15 3 0 15 1 0 44 1 0 16 2 1 53 2 0 8 6 2 10 1 0 9 1 0 24 12 10 302 1 0 181 3 0 71 1 0 4 0 1 45 38 59 333 0 1 346 0 3 23 60 34 397 1 11 43 chain 521207 chr2 243199373 + 135504095 135510201 L1PA5 6144 - 13 6144 5037 1783 0 4 245 4 0 404 0 1 1497 1 2 492 1 0 255 13 4 12 3 17 244 9 0 138 1 3 4 1 0 857 23 50 119 chain 16970 chr2 243199373 + 135517251 135517596 L1MA4 2864 + 2499 2805 135667 17 1 0 101 1 0 51 8 5 19 84 48 22 4 5 5 0 1 32 chain 21057 chr2 243199373 + 135521647 135521955 MER49 923 + 180 490 123704 69 1 0 35 7 14 37 2 0 66 4 2 87 chain 52276 chr2 243199373 + 135526031 135526663 L1PA6 6164 + 5532 6162 57440 471 7 0 9 0 6 100 0 1 37 2 0 6 chain 3073 chr2 243199373 + 135548110 135548158 MER5B 177 - 124 173 223490 14 4 5 30 chain 62172 chr2 243199373 + 135561263 135562073 LTR12 884 - 23 884 51818 64 40 70 327 0 22 141 1 0 237 chain 408343 chr2 243199373 + 135563608 135568502 HERV9-int 5642 - 818 5642 9847 11 0 1 682 1 0 849 0 1 132 0 5 152 5 6 1807 0 1 66 3 4 7 80 0 156 7 8 145 1 0 187 4 5 599 chain 53543 chr2 243199373 + 135568554 135569219 LTR12_ 688 - 0 688 56651 501 1 0 24 1 0 17 24 8 20 0 41 77 chain 31437 chr2 243199373 + 135570300 135570702 L1PA7 6471 + 6057 6466 81752 190 4 9 200 0 2 8 chain 43202 chr2 243199373 + 135577600 135578075 L1PA3long 6157 - 0 476 65169 470 0 1 5 chain 43901 chr2 243199373 + 135578075 135578572 L1P1 4361 + 2924 3426 64333 19 0 5 478 chain 550446 chr2 243199373 + 135583021 135589028 L1PA2 6032 + 6 6032 1383 1277 0 9 1286 1 0 471 1 0 1177 0 4 242 0 1 1333 0 7 219 chain 11699 chr2 243199373 + 135589996 135590266 Tigger3a 397 + 0 302 153482 25 94 114 9 0 10 96 5 7 41 chain 13991 chr2 243199373 + 135598358 135598598 L1PB1 5432 - 12 231 144607 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 1 0 19 16 6 6 1 0 16 1 0 43 1 0 16 2 1 19 chain 92215 chr2 243199373 + 135605046 135606441 L1PA7 6471 - 16 1109 38897 259 0 1 95 321 0 398 0 2 84 0 2 93 0 1 47 0 13 98 chain 12030 chr2 243199373 + 135609316 135609457 L1PA16 3655 - 532 673 152076 141 chain 9449 chr2 243199373 + 135634677 135634828 Tigger3b 1229 - 1050 1180 163323 51 28 7 72 chain 41778 chr2 243199373 + 135649012 135649606 L1PB4 2604 + 1943 2544 66930 140 28 34 92 12 13 85 0 1 75 2 0 28 0 1 132 chain 106834 chr2 243199373 + 135670772 135672377 L1MA1 4479 - 409 2014 35026 109 0 1 8 3 0 5 1 0 60 0 5 23 0 1 4 46 46 53 1 0 16 3 1 24 1 0 195 2 0 129 3 2 125 4 0 12 1 0 76 4 0 18 2 0 112 0 4 57 2 0 26 0 1 6 5 4 69 0 2 10 6 5 57 2 4 29 2 0 8 15 23 72 2 1 72 2 1 11 8 12 58 0 2 46 chain 8114 chr2 243199373 + 135723750 135723934 L1MA4A 3247 - 109 269 170421 5 2 0 5 2 0 10 7 5 4 0 1 4 1 0 4 0 1 41 7 3 24 11 0 47 4 0 6 chain 138689 chr2 243199373 + 135725428 135726966 SVA_D 2077 - 0 2077 26368 12 2 0 626 0 536 694 2 0 184 1 8 17 chain 24122 chr2 243199373 + 135748618 135748899 AluY 311 + 29 311 109630 103 0 1 178 chain 8964 chr2 243199373 + 135767326 135767455 MER85 139 - 0 139 165806 23 2 0 7 1 13 96 chain 6149 chr2 243199373 + 135785581 135785667 MER53 195 - 108 195 183989 12 1 2 73 chain 22659 chr2 243199373 + 135789683 135789955 AluSg4 309 + 37 309 117282 272 chain 165704 chr2 243199373 + 135790189 135792427 SVA_D 2077 - 5 2077 22548 602 0 98 159 5 4 106 200 0 10 1 0 41 1 0 6 35 10 6 1 0 27 1 0 49 1 38 148 40 0 51 5 12 154 40 0 372 2 11 128 7 0 40 chain 7696 chr2 243199373 + 135791061 135791143 SVA_D 2077 - 769 852 160843 73 0 1 9 chain 3589 chr2 243199373 + 135791176 135791239 SVA_D 2077 - 885 948 167714 63 chain 935 chr2 243199373 + 135791320 135791355 SVA_D 2077 - 778 813 122122 35 chain 2883 chr2 243199373 + 135791839 135791872 SVA_D 2077 - 1603 1636 227309 33 chain 8165 chr2 243199373 + 135792564 135792660 L1MB8 1703 + 1449 1545 170141 96 chain 3424 chr2 243199373 + 135822933 135823010 Charlie1a 1436 + 1057 1135 216708 30 26 27 21 chain 27627 chr2 243199373 + 135837417 135837708 AluYd8 298 + 0 291 94276 291 chain 3235 chr2 243199373 + 135841860 135841896 L1MB8 1703 - 798 834 220319 36 chain 40534 chr2 243199373 + 135847136 135847658 L1PA7 6471 + 5941 6461 68542 255 4 3 98 22 21 143 chain 16851 chr2 243199373 + 135852333 135852591 L1MA4 2864 - 221 482 135976 70 29 33 41 3 2 115 chain 132485 chr2 243199373 + 135862772 135864343 SVA_C 1631 + 26 1628 27528 11 28 6 804 24 71 6 0 1 14 0 4 43 0 4 12 1 2 319 0 1 14 0 2 270 7 0 18 chain 3851 chr2 243199373 + 135913101 135913147 Tigger3c 601 - 70 116 209640 46 chain 78524 chr2 243199373 + 135934708 135935727 MER11A 1151 - 0 1151 44256 163 6 7 60 0 1 35 18 0 12 6 55 128 4 5 146 1 2 96 0 1 112 0 2 32 4 0 64 1 0 63 0 99 68 chain 22691 chr2 243199373 + 135946404 135946677 L1PA2 6032 + 5785 6032 117120 239 26 0 8 chain 18858 chr2 243199373 + 135958998 135959251 AluSx1 309 + 58 299 130498 139 1 0 40 20 9 53 chain 542218 chr2 243199373 + 135989380 135995504 L1PA4 6152 + 0 6140 2468 5 1 0 49 6 12 414 5 6 61 4 0 552 0 1 1594 0 5 179 0 1 386 0 2 1742 2 1 1118 0 6 6 chain 22656 chr2 243199373 + 136007100 136007457 THE1A 353 + 0 353 117298 110 32 31 77 30 27 108 chain 128780 chr2 243199373 + 136007457 136009021 THE1A-int 1579 + 0 1579 28367 281 0 2 210 7 13 407 0 2 134 2 1 311 0 6 212 chain 4121 chr2 243199373 + 136009633 136009680 THE1A 353 + 289 336 205643 47 chain 14756 chr2 243199373 + 136023781 136024040 MER4D1 891 + 165 454 142082 72 0 28 21 28 41 8 8 0 60 1 0 4 1 2 12 1 0 16 1 0 9 1 0 16 chain 64086 chr2 243199373 + 136032202 136032947 SVA_B 1603 - 8 819 50969 605 1 0 14 1 0 14 5 1 41 8 4 38 0 76 18 chain 228575 chr2 243199373 + 136044148 136048505 L1PB1 5432 - 625 4605 17384 13 8 0 89 5 7 71 8 0 284 0 2 320 1 0 90 1 0 93 8 0 94 10 8 314 0 1 32 2 1 86 11 12 357 16 20 22 3 27 20 7 6 287 724 396 51 320 8 146 51 0 85 2 5 183 2 1 232 68 57 80 4 323 127 2 0 5 1 0 4 4 7 14 chain 541839 chr2 243199373 + 136049167 136055281 L1PA4 6152 - 1 6138 2533 856 0 1 230 0 1 1374 7 8 504 1 0 563 0 20 1358 2 0 193 1 4 1025 chain 75107 chr2 243199373 + 136081650 136082521 L1PA5 6144 - 2 874 45964 7 4 0 103 1 0 72 0 1 4 1 0 583 0 2 75 0 4 21 chain 315226 chr2 243199373 + 136085646 136089435 L1PA6 6164 - 8 3817 12795 267 0 3 567 1 5 420 0 1 465 0 5 497 0 1 74 2 1 79 0 2 213 1 2 31 1 0 15 1 5 236 0 3 74 15 6 43 5 0 361 0 5 132 5 15 72 2 0 144 1 0 65 chain 13727 chr2 243199373 + 136127778 136128058 L1PB1 5432 - 17 273 145517 11 1 0 13 1 0 21 1 0 24 2 0 10 14 12 13 19 9 6 1 0 16 1 0 39 5 4 16 2 1 38 1 0 14 2 0 9 chain 27218 chr2 243199373 + 136135316 136135756 MLT2A1 477 + 0 473 95529 167 6 3 9 0 1 23 0 1 73 1 0 15 46 47 46 4 0 6 5 43 39 chain 112845 chr2 243199373 + 136137101 136138432 L1P2 5180 + 1863 3192 33422 464 1 0 225 1 0 640 chain 490435 chr2 243199373 + 136138443 136144566 L1PA6 6164 + 0 6162 7343 134 75 63 299 15 14 80 0 4 70 0 1 181 0 1 4 2 3 74 0 25 222 4 13 534 0 3 473 4 0 61 0 1 75 6 5 555 0 3 298 0 1 460 0 1 618 0 3 373 0 5 48 10 9 95 15 14 204 3 0 273 0 1 707 0 1 142 0 2 9 chain 82490 chr2 243199373 + 136153326 136154512 L1MA3 4352 + 3163 4347 42542 47 1 3 163 6 5 21 4 3 147 0 11 116 1 0 414 39 13 6 0 7 59 2 1 74 16 30 5 1 0 29 1 0 11 6 2 17 chain 520421 chr2 243199373 + 136160545 136166543 L1PA4 6152 + 8 6140 5114 551 0 1 676 0 1 505 2 1 143 0 133 1164 1 0 415 0 1 466 1 2 5 1 0 937 4 3 1098 0 1 29 chain 390110 chr2 243199373 + 136171335 136175690 L1PA3long 6157 + 1801 6157 10455 213 0 3 1153 3 1 1844 2 1 835 0 1 305 chain 3443 chr2 243199373 + 136177312 136177349 MER66B 489 - 152 189 216328 37 chain 60545 chr2 243199373 + 136183129 136183944 L1PA15 4387 + 1391 2209 52550 63 4 0 243 7 3 56 0 5 123 10 17 51 1 0 257 chain 86247 chr2 243199373 + 136199556 136200899 L1PA6 6164 + 4945 5960 41058 837 328 0 178 chain 15132 chr2 243199373 + 136200929 136201099 L1PA6 6164 + 5981 6151 140966 170 chain 22534 chr2 243199373 + 136209593 136209925 THE1A 353 - 0 353 117875 39 3 4 55 0 21 23 9 8 51 9 8 33 0 1 110 chain 126206 chr2 243199373 + 136209925 136211474 THE1A-int 1579 - 0 1576 29030 4 0 1 4 1 0 231 0 1 479 0 1 154 1 26 175 1 0 4 4 5 491 chain 26002 chr2 243199373 + 136211476 136211891 THE1A 353 - 0 353 100006 139 3 0 5 0 3 8 4 3 24 0 1 60 1 0 34 61 0 76 chain 322415 chr2 243199373 + 136238188 136241748 L1PA3long 6157 - 2 3568 12503 2892 0 4 87 0 1 35 1 2 545 chain 21976 chr2 243199373 + 136246798 136247038 L1PA3long 6157 + 5915 6157 120331 69 0 2 171 chain 5605 chr2 243199373 + 136252938 136253000 MER41B 635 - 93 155 189041 62 chain 75906 chr2 243199373 + 136255801 136256801 MER11C 1089 + 0 1052 45537 205 0 7 8 0 5 39 11 14 41 1 18 73 1 0 4 14 15 8 0 9 125 28 28 176 2 10 40 0 3 224 chain 295029 chr2 243199373 + 136272531 136276286 L1P3 4156 - 17 4156 13705 24 2 1 6 2 0 243 2 1 32 1 2 22 3 329 70 0 27 373 0 3 104 0 2 40 0 1 154 5 9 57 9 1 120 0 2 34 0 15 396 9 4 247 4 5 407 0 3 316 0 13 4 1 0 5 1 2 277 0 4 70 20 19 125 0 1 34 3 0 15 3 4 66 4 6 42 0 1 77 6 5 68 1 0 251 chain 48827 chr2 243199373 + 136279453 136280040 LTR14C 587 + 0 587 59857 22 0 1 299 1 0 265 chain 60239 chr2 243199373 + 136284033 136284766 MER4E 760 + 14 752 52714 355 0 2 63 1 0 291 0 2 9 0 2 14 chain 3302 chr2 243199373 + 136297967 136298002 Tigger1 2417 - 800 835 218949 35 chain 24193 chr2 243199373 + 136323355 136323655 LTR14A 344 - 0 344 109260 42 0 1 56 1 44 66 0 1 4 2 1 129 chain 5858 chr2 243199373 + 136414059 136414127 U6 107 - 13 81 186599 68 chain 23474 chr2 243199373 + 136428949 136429232 AluSq2 311 - 20 305 113253 161 0 2 122 chain 62051 chr2 243199373 + 136463949 136464632 SVA_D 2077 - 1 733 51876 649 0 49 34 chain 4881 chr2 243199373 + 136525208 136525417 L1ME3A 1206 - 212 427 196472 7 4 0 22 35 36 7 3 0 21 0 2 15 3 0 5 58 71 29 chain 11899 chr2 243199373 + 136532429 136532678 L1MB7 1623 + 932 1187 152606 7 1 0 46 71 77 93 8 9 23 chain 7149 chr2 243199373 + 136563280 136563464 Tigger3b 1229 + 28 215 176412 75 6 7 14 68 70 21 chain 9474 chr2 243199373 + 136588108 136588231 MER85 139 + 6 139 163198 84 0 10 39 chain 22290 chr2 243199373 + 136632667 136632946 AluSp 311 + 9 294 118949 21 0 5 89 0 1 169 chain 24837 chr2 243199373 + 136645671 136646085 LTR14A 344 - 0 344 105689 70 1 2 97 0 4 52 38 7 59 41 0 8 3 0 45 chain 7583 chr2 243199373 + 136673688 136673775 L1PA8 5853 + 5766 5853 173648 87 chain 88054 chr2 243199373 + 136695126 136696165 L1PA5 6144 - 4068 5103 40225 432 0 3 406 1 0 65 9 3 126 chain 360252 chr2 243199373 + 136696165 136700225 L1PA5 6144 + 2061 6135 11357 37 0 3 398 0 2 617 0 1 39 0 1 516 1 0 1108 0 2 506 0 4 131 0 2 707 chain 7464 chr2 243199373 + 136713889 136714114 MER31B 477 - 167 376 174381 28 19 17 65 91 77 22 chain 3020 chr2 243199373 + 136739059 136739091 Tigger4a 237 - 201 233 224628 32 chain 7243 chr2 243199373 + 136749186 136749399 L1MB2 1706 - 24 224 175810 39 7 10 22 1 0 11 84 69 49 chain 29939 chr2 243199373 + 136750215 136750544 L1PA4 6152 + 5823 6152 85003 329 chain 26560 chr2 243199373 + 136764975 136765308 L1PA8 5853 + 5525 5853 97805 39 1 0 44 2 0 71 1 0 61 2 1 19 1 0 29 0 1 63 chain 32944 chr2 243199373 + 136829387 136829830 LTR3A 482 - 40 482 79301 35 1 0 51 0 1 181 8 17 26 11 1 130 chain 32999 chr2 243199373 + 136834391 136834831 LTR3A 482 - 32 482 79213 7 0 1 35 11 10 190 0 1 32 8 17 157 chain 17101 chr2 243199373 + 136845340 136845547 LTR12C 1709 - 728 934 135314 144 1 0 62 chain 4470 chr2 243199373 + 136860936 136861029 MLT1B 390 - 311 390 201113 29 1 0 24 26 13 13 chain 16679 chr2 243199373 + 136915707 136916254 L1MA2 4263 + 3635 3872 136464 27 1 0 70 309 0 65 12 9 13 0 3 50 chain 80872 chr2 243199373 + 136941489 136942509 L1PA8 5853 - 1 1020 43241 52 8 6 33 0 3 17 2 1 52 1 0 6 4 3 55 0 1 15 2 0 44 1 0 168 0 1 341 0 1 43 2 0 16 0 1 51 0 1 31 0 1 76 chain 22415 chr2 243199373 + 136942740 136943041 L1PA16 3655 + 3290 3589 118409 213 2 3 71 3 0 12 chain 36328 chr2 243199373 + 136948691 136949214 MER1A 529 + 0 529 74465 17 18 25 348 0 3 5 3 0 38 2 0 6 1 0 5 23 25 57 chain 100909 chr2 243199373 + 136954647 136956031 L1MA2 4263 - 233 1613 36535 52 22 20 37 4 5 43 0 1 66 15 12 131 1 0 78 5 1 521 0 4 149 1 2 125 22 21 112 chain 26117 chr2 243199373 + 136959456 136959780 LTR17 781 - 456 781 99538 27 12 4 166 0 9 119 chain 14107 chr2 243199373 + 136960752 136960929 HERV17-int 4347 - 762 943 144189 165 1 5 11 chain 2656 chr2 243199373 + 136976280 136976308 MIR 256 - 24 52 230932 28 chain 65558 chr2 243199373 + 136986556 136987554 L1PB1 5432 + 4418 5393 50309 115 3 4 8 1 2 81 4 0 77 0 2 97 3 2 87 1 2 166 1 2 40 1 2 9 3 0 24 1 0 8 1 0 10 18 12 52 2 1 16 6 10 34 1 0 15 26 16 14 3 1 5 1 0 14 2 0 24 1 0 23 chain 4440 chr2 243199373 + 137002202 137002258 MIRc 230 + 49 105 201449 56 chain 533347 chr2 243199373 + 137017411 137024766 L1PA7 6471 - 14 6468 3799 104 297 0 68 1 2 434 1 0 4 5 6 32 306 0 9 1 0 85 0 1 12 0 2 150 6 5 532 0 1 528 2 1 956 4 3 25 1 0 256 0 19 24 0 3 50 332 0 450 9 1 22 0 1 37 1 0 635 0 1 344 0 1 262 0 7 621 3 0 254 0 13 92 1 2 399 chain 2797 chr2 243199373 + 137026781 137026813 L1PA8 5853 - 0 32 228769 32 chain 33257 chr2 243199373 + 137026814 137027243 L1P2 5180 - 3039 3468 78790 101 6 5 4 0 1 318 chain 5188 chr2 243199373 + 137029567 137029632 Tigger4a 237 - 156 221 193167 65 chain 28912 chr2 243199373 + 137052332 137052636 AluYa5 310 - 6 310 89406 304 chain 24675 chr2 243199373 + 137072849 137073139 AluSp 311 + 8 298 106580 290 chain 22905 chr2 243199373 + 137081816 137082169 MER51B 395 + 66 395 116089 161 58 27 40 0 2 25 0 1 4 0 4 65 chain 47118 chr2 243199373 + 137096172 137096879 L1PB 1623 - 99 800 61111 9 1 0 13 5 1 12 3 0 5 1 0 30 2 1 7 1 0 34 0 2 100 9 1 193 2 0 13 13 17 47 0 10 131 13 12 63 chain 14861 chr2 243199373 + 137098231 137098423 Tigger1 2417 + 2227 2417 141754 25 2 0 165 chain 19906 chr2 243199373 + 137107945 137108311 THE1B 368 + 0 368 127459 14 2 0 33 0 1 60 9 10 49 75 78 48 1 0 75 chain 11073 chr2 243199373 + 137153695 137153951 L1MB8 1703 - 82 272 155920 19 88 19 61 0 2 33 7 8 48 chain 44540 chr2 243199373 + 137156121 137156640 L1PA4 6152 - 1 517 63538 5 3 0 482 2 0 5 1 3 21 chain 8311 chr2 243199373 + 137187953 137188071 L1MC1 2226 - 386 505 169327 95 6 7 17 chain 22521 chr2 243199373 + 137189843 137190146 MLT1B 390 - 75 381 117927 139 6 9 48 0 2 67 1 0 25 1 0 16 chain 10013 chr2 243199373 + 137217983 137218105 MSTB-int 1649 - 1527 1649 160522 122 chain 22182 chr2 243199373 + 137219630 137220008 THE1C 375 - 0 375 119435 26 1 0 135 2 1 14 12 13 72 4 5 11 7 21 10 14 0 14 9 6 47 chain 492801 chr2 243199373 + 137226554 137232389 L1PA6 6164 + 287 6162 7232 51 3 0 122 6 5 217 0 1 823 8 9 501 0 1 315 1 2 135 1 2 115 0 1 114 0 3 302 0 1 189 3 4 210 4 5 235 0 1 43 0 14 260 0 1 331 0 2 31 1 0 340 1 0 351 0 7 284 0 5 87 0 3 645 0 1 106 chain 3953 chr2 243199373 + 137238044 137238090 L1M2a1 1281 - 264 310 208100 46 chain 42052 chr2 243199373 + 137241952 137242485 L1PA8 5853 - 464 993 66553 261 0 1 40 4 1 77 2 0 149 chain 32455 chr2 243199373 + 137242487 137242947 L1PA8 5853 + 5399 5853 80102 121 0 1 43 1 0 46 2 0 69 1 0 10 1 0 38 15 14 19 2 1 92 chain 18007 chr2 243199373 + 137256235 137256528 THE1B 368 - 60 361 132840 66 1 0 12 3 2 14 15 24 21 1 0 55 8 9 41 7 8 49 chain 3047 chr2 243199373 + 137257945 137257977 MIRb 242 + 102 134 224066 32 chain 20685 chr2 243199373 + 137323629 137323862 L1PA3long 6157 + 5923 6157 125021 4 0 1 229 chain 6540 chr2 243199373 + 137330486 137330664 MLT1C 463 + 2 175 180918 19 46 46 30 10 11 13 10 4 50 chain 26166 chr2 243199373 + 137342924 137343222 AluYc3 301 - 3 301 99341 143 1 0 40 1 2 113 chain 529951 chr2 243199373 + 137353642 137359740 L1PA5 6144 + 0 6140 4193 120 0 14 817 1 0 217 0 1 1006 0 2 132 1 5 351 0 3 930 5 23 53 2 1 953 1 0 383 4 3 257 0 4 865 chain 38527 chr2 243199373 + 137360068 137360677 THE1B-int 1605 - 1061 1605 71402 35 15 19 39 38 21 276 52 0 154 chain 31219 chr2 243199373 + 137363207 137363547 L1PA2 6032 - 0 340 82122 340 chain 33099 chr2 243199373 + 137363547 137363910 L1PA2 6032 + 5312 5676 79055 100 0 1 263 chain 13308 chr2 243199373 + 137367888 137368043 L1PA8A 6298 + 6135 6290 147055 155 chain 55847 chr2 243199373 + 137377241 137378041 L1PA15 4387 - 131 925 55217 39 2 1 11 6 2 9 0 2 7 2 1 54 0 4 22 1 0 45 0 1 42 0 2 12 6 7 63 1 0 38 6 4 60 4 0 18 2 0 350 chain 5094 chr2 243199373 + 137389562 137389699 MER3 215 + 20 144 194140 33 28 25 38 25 15 13 chain 15058 chr2 243199373 + 137411079 137411340 L1PA8 5853 + 5586 5836 141146 23 2 0 59 53 36 36 2 1 77 0 9 9 chain 26146 chr2 243199373 + 137429656 137430020 THE1B 368 + 0 368 99420 49 0 9 6 13 9 6 4 0 89 1 0 30 0 4 166 chain 88377 chr2 243199373 + 137437486 137438655 L1PA10 4194 + 2978 4150 40230 157 1 0 202 11 12 321 4 1 58 1 8 49 0 1 4 40 43 248 9 7 27 3 0 34 chain 273601 chr2 243199373 + 137442975 137446880 L1PB1 5432 + 1611 5422 14992 90 0 1 7 7 8 126 2 6 268 0 1 325 6 9 48 3 1 11 83 0 306 0 2 13 7 1 195 0 1 211 0 1 720 0 3 167 0 1 32 18 22 30 0 5 234 0 5 167 3 0 219 3 0 130 1 0 5 1 2 10 4 3 17 14 16 65 21 19 22 1 0 11 1 0 10 6 2 9 2 0 52 2 1 16 8 7 36 2 1 15 2 0 6 14 7 17 13 10 10 2 0 24 1 0 21 1 0 13 1 0 18 chain 40489 chr2 243199373 + 137449909 137450437 MLT2A2 560 - 0 560 68609 144 5 16 129 0 1 111 0 20 139 chain 7698 chr2 243199373 + 137457534 137457622 L1PA6 6164 + 6071 6159 172945 88 chain 68062 chr2 243199373 + 137457630 137458474 L1PA7 6471 + 5618 6459 49220 16 0 1 75 1 0 459 3 0 248 1 10 6 9 0 26 chain 18628 chr2 243199373 + 137461986 137462193 L1PA7 6471 + 6089 6296 131142 207 chain 13257 chr2 243199373 + 137462202 137462363 L1PA7 6471 + 6306 6469 147259 150 0 2 11 chain 181792 chr2 243199373 + 137468227 137470253 L1PA4 6152 - 1 2028 20810 333 0 1 433 1 0 788 2 3 469 chain 23520 chr2 243199373 + 137470253 137470506 L1PA4 6152 + 3890 4143 112510 253 chain 5015 chr2 243199373 + 137474957 137475032 MER89 557 - 40 116 194971 48 7 8 20 chain 33095 chr2 243199373 + 137488566 137488945 L1PA5 6144 - 6 386 79059 141 0 1 238 chain 31889 chr2 243199373 + 137498051 137498399 L1PA2 6032 - 1 349 81027 348 chain 100811 chr2 243199373 + 137515852 137517249 LTR12C 1709 + 0 1709 36557 41 39 43 181 13 14 12 5 6 41 10 53 73 14 10 176 0 278 184 1 0 4 4 2 106 11 4 385 13 12 84 chain 3158 chr2 243199373 + 137540148 137540231 L1MA8 2339 + 2089 2150 221761 10 3 1 16 23 3 31 chain 3041 chr2 243199373 + 137540523 137540558 Tigger9b 617 - 530 565 224194 35 chain 39864 chr2 243199373 + 137574825 137575252 L1PA2 6032 - 895 1322 69382 427 chain 80748 chr2 243199373 + 137575252 137576127 L1PA2 6032 + 5154 6029 43290 875 chain 3020 chr2 243199373 + 137581598 137581665 MIR 256 - 75 143 224598 16 21 22 30 chain 157366 chr2 243199373 + 137635492 137637259 L1PA5 6144 - 0 1772 23681 330 0 3 442 0 2 995 chain 50590 chr2 243199373 + 137637259 137637830 L1P1 4361 + 2203 2775 58589 102 0 1 469 chain 67035 chr2 243199373 + 137654766 137655726 LTR12 884 - 0 884 49641 508 2 0 11 1 0 21 24 8 19 27 2 28 25 0 15 18 2 51 0 6 107 0 4 78 7 6 18 chain 1200 chr2 243199373 + 137655352 137655379 LTR12 884 - 740 767 149073 27 chain 29229 chr2 243199373 + 137670110 137670464 THE1A 353 + 0 353 87912 110 1 0 243 chain 121757 chr2 243199373 + 137670464 137672036 THE1A-int 1579 + 0 1579 30460 113 1 4 80 9 8 118 0 1 208 7 6 378 1 2 472 0 1 6 1 0 41 0 5 119 1 0 17 chain 27930 chr2 243199373 + 137672036 137672391 THE1A 353 + 0 353 93236 106 1 0 201 1 0 46 chain 43305 chr2 243199373 + 137693665 137694373 L1PB1 5432 + 4740 5416 65042 54 8 0 11 1 9 289 7 6 5 1 0 24 1 0 9 1 0 9 7 3 8 2 0 52 1 0 18 1 0 40 7 6 13 24 12 7 0 1 11 3 1 4 1 0 13 1 0 3 1 0 22 2 1 20 1 0 13 1 0 12 chain 12732 chr2 243199373 + 137697767 137697964 L1PB4 2604 - 32 237 149324 13 11 10 63 0 11 96 2 0 12 chain 518387 chr2 243199373 + 137698439 137704688 L1PA6 6164 - 2 6164 5338 9 0 9 818 1 11 666 3 0 716 29 0 273 1 0 470 0 1 731 2 0 133 6 2 48 0 1 452 86 5 568 2 14 1235 chain 22443 chr2 243199373 + 137707356 137708001 L1PA8 5853 + 5294 5853 118280 190 352 267 9 2 1 92 chain 26555 chr2 243199373 + 137712004 137712308 AluYf4 310 + 0 304 97827 304 chain 135428 chr2 243199373 + 137733183 137735356 L1PA10 4194 - 27 1923 26934 17 1 0 29 3 1 4 1 0 403 6 14 77 0 10 271 15 14 181 298 0 16 0 1 173 2 0 11 0 4 36 0 8 45 0 16 136 0 4 21 27 6 166 9 8 68 11 10 146 chain 10482 chr2 243199373 + 137741818 137742228 MSTB 430 + 10 428 158320 73 13 13 13 1 0 8 50 49 25 16 24 26 145 148 27 1 0 12 chain 31798 chr2 243199373 + 137791365 137791774 L1PA6 6164 - 2 403 81173 145 2 1 37 5 0 7 4 2 209 chain 43718 chr2 243199373 + 137792000 137792603 L1PA8 5853 - 0 591 64546 93 1 0 19 2 1 51 2 0 10 2 1 19 3 1 50 2 0 11 0 1 13 18 15 4 1 0 302 chain 10215 chr2 243199373 + 137805221 137805464 LTR38B 592 - 272 498 159542 22 3 4 8 0 8 45 0 2 52 90 62 23 chain 20827 chr2 243199373 + 137805480 137805721 L1PA7 6471 - 1 242 124514 241 chain 49351 chr2 243199373 + 137812353 137812979 L1PA8 5853 - 6 617 59488 87 1 0 19 2 1 47 5 4 10 1 0 71 2 0 44 1 0 214 8 0 114 chain 540900 chr2 243199373 + 137828134 137834307 L1PA4 6152 - 1 6151 2680 709 1 6 64 0 1 312 50 0 360 0 1 346 0 4 1047 0 15 35 0 4 33 1 2 2636 1 0 114 10 7 454 chain 130396 chr2 243199373 + 137834402 137835889 L1PA4 6152 - 0 1494 27988 10 0 6 244 1 0 79 0 1 440 0 1 713 chain 124685 chr2 243199373 + 137844842 137847328 L1PB1 5432 + 3417 5383 29480 13 7 8 43 44 49 27 13 23 142 25 30 172 0 1 6 11 9 172 0 1 4 330 2 491 7 13 189 14 15 26 20 19 85 0 11 82 4 5 43 228 26 14 1 0 8 1 0 12 4 0 11 2 0 51 2 1 15 1 0 41 10 9 10 26 13 10 0 1 7 2 0 5 1 0 14 2 0 24 1 0 13 chain 5225 chr2 243199373 + 137857966 137858044 MADE1 96 - 0 94 192773 34 4 20 40 chain 488270 chr2 243199373 + 137859084 137865103 L1PA7 6471 + 424 6457 7429 694 0 2 103 0 3 327 20 22 183 0 1 401 0 4 403 4 6 69 3 0 247 0 4 251 0 1 235 8 0 8 19 1 114 1 0 43 0 1 457 4 1 5 0 2 23 5 7 232 0 2 202 7 8 121 0 2 61 0 8 306 7 8 13 1 0 346 1 2 195 0 1 63 5 8 408 0 1 45 7 10 157 0 1 215 chain 30809 chr2 243199373 + 137866962 137867375 MER1A 529 - 72 486 82849 41 11 7 21 0 7 93 3 0 142 0 1 102 chain 179467 chr2 243199373 + 137887952 137889926 L1PA3long 6157 - 2 1976 21035 1974 chain 27238 chr2 243199373 + 137905570 137905943 THE1C 375 + 0 375 95466 186 23 22 12 0 3 152 chain 3676 chr2 243199373 + 137907843 137907885 THE1C-int 1605 + 1563 1605 212301 42 chain 15170 chr2 243199373 + 137920352 137920546 AluSp 311 - 35 228 140854 133 12 11 49 chain 65727 chr2 243199373 + 137921853 137922609 L1PA5 6144 + 5387 6144 50233 607 1 0 6 7 9 135 chain 48219 chr2 243199373 + 137965537 137966155 PABL_A 660 - 0 635 60302 16 0 2 321 0 1 135 1 2 90 0 9 24 5 9 26 chain 76949 chr2 243199373 + 137972006 137972901 L1PA7 6471 - 3 899 44999 331 1 0 197 0 1 237 0 2 83 1 0 45 chain 30558 chr2 243199373 + 137996104 137996422 AluYb8 318 - 0 318 83315 318 chain 70977 chr2 243199373 + 138016282 138017235 L1PA8 5853 - 32 979 47938 61 1 0 19 2 1 36 6 4 21 10 9 4 0 1 4 1 0 53 2 0 33 17 16 548 0 2 135 chain 32346 chr2 243199373 + 138022400 138022775 L1PA3long 6157 - 1 376 80279 137 0 7 7 7 0 224 chain 33451 chr2 243199373 + 138022776 138023137 L1PA3long 6157 + 5389 5750 78487 361 chain 25780 chr2 243199373 + 138025729 138026033 L1PA6 6164 - 2 307 100965 9 0 1 295 chain 30470 chr2 243199373 + 138026035 138026403 MER41A 554 - 185 554 83487 46 0 1 322 chain 370974 chr2 243199373 + 138038979 138043155 L1PA4 6152 - 0 4186 11057 142 4 9 1461 1 0 252 0 2 80 0 6 2181 2 0 53 chain 125217 chr2 243199373 + 138055519 138057065 THE1A-int 1579 + 4 1578 29319 44 0 11 184 1 0 364 9 8 491 5 24 432 1 0 7 0 1 8 chain 30224 chr2 243199373 + 138061386 138061748 L1PA7 6471 - 7 372 84118 165 2 4 163 0 1 32 chain 542012 chr2 243199373 + 138067078 138073102 L1PA3long 6157 - 0 6157 2503 147 0 1 118 1 0 392 0 3 3277 0 1 1314 0 128 623 0 1 152 chain 24533 chr2 243199373 + 138074063 138074355 AluYc 301 + 0 299 107356 104 0 1 14 0 6 174 chain 19178 chr2 243199373 + 138086210 138086527 THE1C 375 + 0 332 129589 138 1 5 32 0 7 6 34 47 8 16 0 5 0 3 57 0 4 20 chain 4881 chr2 243199373 + 138086570 138086935 THE1C-int 1605 + 0 424 60200 14 9 8 63 11 68 17 4 1 157 1 7 89 chain 140537 chr2 243199373 + 138087961 138089741 LTR12C 1709 - 0 1709 26066 133 1 0 348 0 4 106 3 1 5 1 0 128 78 0 126 0 40 115 41 0 15 1 8 413 0 1 266 chain 5381 chr2 243199373 + 138088686 138088752 LTR12C 1709 - 884 950 152588 66 chain 3294 chr2 243199373 + 138089005 138089046 LTR12C 1709 - 847 887 135726 25 2 1 14 chain 5965 chr2 243199373 + 138089741 138090187 THE1C-int 1605 + 1156 1605 60200 38 50 52 82 12 13 264 chain 3636 chr2 243199373 + 138103739 138103891 L1MB2 1706 - 57 205 213034 27 95 91 30 chain 8828 chr2 243199373 + 138109521 138109643 MER30 238 + 123 238 166503 7 4 0 69 3 0 39 chain 515125 chr2 243199373 + 138117816 138123968 L1PA6 6164 + 0 6162 5657 118 6 8 245 25 32 106 2 1 120 0 3 1732 1 0 1208 7 5 125 1 0 245 8 5 312 0 1 91 0 4 961 0 1 839 chain 125791 chr2 243199373 + 138130269 138131654 L1PA3long 6157 - 0 1385 29159 1385 chain 5202 chr2 243199373 + 138140735 138140812 HERVL18-int 2198 + 595 673 193009 21 5 6 51 chain 27245 chr2 243199373 + 138141054 138141430 LTR18A 364 + 0 364 95447 222 36 24 118 chain 550869 chr2 243199373 + 138150730 138156760 L1PA2 6032 - 1 6031 1335 4569 5 3 422 0 3 778 1 0 255 chain 6250 chr2 243199373 + 138161341 138161457 MER20 218 + 18 132 183167 42 23 25 7 4 0 40 chain 20599 chr2 243199373 + 138161809 138162419 L1PB1 5432 + 4914 5296 125297 121 18 18 47 281 58 11 11 9 42 2 1 16 1 0 44 1 0 15 chain 3606 chr2 243199373 + 138182716 138182777 MER2 342 + 147 208 213536 26 7 0 8 0 7 20 chain 55447 chr2 243199373 + 138188562 138189318 MER4E1 777 - 0 777 55441 210 3 4 25 1 2 188 13 32 70 1 2 227 3 2 15 chain 13324 chr2 243199373 + 138223959 138224179 MER30 238 + 0 237 146989 22 7 14 65 2 0 9 4 16 27 15 15 69 chain 135811 chr2 243199373 + 138241592 138243073 L1PA3long 6157 - 0 1481 26816 1481 chain 169883 chr2 243199373 + 138243073 138245289 L1P1 4361 + 1485 3388 22063 173 0 3 721 0 3 686 319 0 317 chain 29992 chr2 243199373 + 138244656 138244972 AluYb9 318 + 0 316 84832 316 chain 29794 chr2 243199373 + 138245322 138245632 AluYa5 310 - 0 310 85475 310 chain 2820 chr2 243199373 + 138248206 138248237 L1MC1 2226 - 43 74 228455 31 chain 29751 chr2 243199373 + 138271711 138272156 MLT2A2 560 + 0 560 85649 183 2 0 13 34 35 71 2 111 45 0 5 50 0 2 45 chain 348918 chr2 243199373 + 138272156 138276527 HERVL-int 5654 + 0 4362 11640 99 0 1 621 0 1 206 6 6 235 0 1 161 6 7 342 6 14 211 0 2 239 0 2 121 0 1 6 10 11 914 1 2 261 42 0 24 0 1 165 5 18 690 chain 528616 chr2 243199373 + 138312139 138318285 L1PA5 6144 + 0 6137 4343 322 17 20 66 18 20 1013 0 1 677 1 0 74 0 2 655 22 0 441 0 2 1399 0 1 603 1 5 462 2 1 373 chain 528051 chr2 243199373 + 138339913 138345989 L1PA5 6144 - 2 6088 4399 788 1 0 57 0 3 613 0 1 573 0 3 602 4 2 217 1 0 87 1 0 38 0 1 88 0 1 497 0 3 124 0 1 1917 0 1 46 3 4 419 chain 41037 chr2 243199373 + 138356448 138356905 L1PA2 6032 - 0 453 67846 11 4 0 442 chain 34703 chr2 243199373 + 138356905 138357279 L1PA2 6032 + 5218 5592 76618 374 chain 2933 chr2 243199373 + 138357966 138358022 Tigger3b 1229 + 291 345 226481 17 0 2 19 9 5 11 chain 3371 chr2 243199373 + 138368527 138368571 L1PA3long 6157 + 6114 6155 217662 5 3 0 36 chain 261947 chr2 243199373 + 138380027 138383052 L1PA6 6164 + 3132 6162 15588 49 2 0 377 0 1 945 0 1 203 1 2 457 0 5 143 1 0 847 chain 27538 chr2 243199373 + 138395743 138396097 THE1A 353 + 0 351 94543 35 2 1 74 1 0 92 1 0 149 chain 117847 chr2 243199373 + 138396099 138397636 THE1A-int 1579 + 0 1574 31851 82 0 17 358 1 0 41 7 0 135 17 19 19 0 30 346 17 17 309 10 6 195 chain 28308 chr2 243199373 + 138397641 138397995 THE1A 353 + 0 353 91909 50 0 1 59 1 0 92 1 0 151 chain 26140 chr2 243199373 + 138405805 138406294 L1MA4 2864 - 55 487 99440 43 1 0 3 1 0 26 6 0 14 63 32 18 3 0 6 2 0 74 0 2 18 0 5 80 3 0 103 17 0 8 chain 12789 chr2 243199373 + 138419952 138420126 MER50 708 - 528 708 149100 126 6 12 42 chain 26397 chr2 243199373 + 138436888 138437194 AluY 311 + 2 310 98419 85 0 1 44 6 7 171 chain 292337 chr2 243199373 + 138442204 138445821 HERVH-int 3825 - 0 3825 13874 223 0 2 34 1 0 4 0 1 23 0 3 9 3 0 188 8 218 39 9 11 593 7 9 688 0 1 309 1 0 13 3 5 11 0 1 11 10 7 196 15 0 154 0 2 116 2 0 109 0 3 63 1 0 82 1 0 41 1 0 4 23 2 19 1 32 19 1 0 10 1 0 38 5 0 43 0 1 34 0 3 451 chain 43827 chr2 243199373 + 138452949 138453433 L1PA4 6152 - 15 499 64412 484 chain 17911 chr2 243199373 + 138453433 138453629 L1PA4 6152 + 5452 5648 133076 196 chain 19092 chr2 243199373 + 138457645 138457892 L1P1 4361 + 4083 4328 129834 67 1 0 155 1 0 23 chain 51412 chr2 243199373 + 138468030 138468734 LTR30 714 - 10 714 58028 13 1 0 30 27 11 8 0 20 337 14 2 29 2 1 4 0 6 142 0 4 97 chain 12504 chr2 243199373 + 138473833 138474341 LTR12C 1709 + 931 1525 150228 137 2 17 7 15 0 17 305 391 25 chain 4215 chr2 243199373 + 138474011 138474099 LTR12C 1709 + 671 718 194844 5 41 0 42 chain 104270 chr2 243199373 + 138477996 138479314 HERVL-int 5654 + 0 1315 35673 17 3 1 168 1 0 182 1 0 618 0 1 19 0 1 109 1 0 199 chain 16254 chr2 243199373 + 138494132 138494491 L1PB1 5432 + 5105 5430 137599 9 5 0 20 1 0 12 1 0 10 9 5 7 2 0 38 1 0 5 0 1 7 1 0 18 1 0 43 1 0 16 14 2 29 8 5 14 2 0 24 9 8 13 2 5 8 1 0 16 2 0 10 chain 12965 chr2 243199373 + 138530731 138530931 LTR23 429 - 86 269 148371 70 14 5 31 8 0 77 chain 8752 chr2 243199373 + 138531538 138531684 L1PB4 2604 - 54 202 166906 94 7 9 16 1 0 4 5 6 19 chain 116234 chr2 243199373 + 138547989 138549527 THE1B-int 1605 - 13 1570 32362 188 0 1 70 0 1 31 8 7 530 0 9 228 0 1 76 38 21 203 0 1 27 10 34 129 chain 7010 chr2 243199373 + 138560405 138560484 MER4C 627 + 2 81 177396 79 chain 16584 chr2 243199373 + 138561932 138562148 L1PA5 6144 - 0 219 136702 13 0 2 128 0 6 13 5 0 57 chain 75945 chr2 243199373 + 138562148 138563019 L1PA5 6144 + 5264 6141 45516 118 0 1 549 0 9 194 4 0 6 chain 12757 chr2 243199373 + 138579417 138579561 L1PA6 6164 - 2 146 149225 144 chain 36947 chr2 243199373 + 138579700 138580174 HERVH-int 3825 + 3334 3825 73590 139 1 0 88 0 1 4 1 0 48 0 1 36 0 17 157 chain 8550 chr2 243199373 + 138596713 138596817 MER30 238 + 131 238 168016 65 0 3 39 chain 24315 chr2 243199373 + 138599118 138599475 THE1B 368 + 0 368 108578 41 1 16 111 14 13 18 13 11 83 1 0 75 chain 2811 chr2 243199373 + 138608293 138608323 L1MB7 1623 + 1391 1421 228596 30 chain 49690 chr2 243199373 + 138629698 138630346 PABL_A 660 - 2 660 59242 69 11 13 150 0 3 99 1 6 318 chain 24617 chr2 243199373 + 138649449 138649737 AluSp 311 + 10 298 106902 288 chain 24906 chr2 243199373 + 138684126 138684423 L1PA7 6471 - 10 308 105303 151 1 2 145 chain 22705 chr2 243199373 + 138708787 138709202 L1PB3 3668 - 52 437 117053 4 1 0 13 7 4 12 3 2 12 7 3 37 3 1 21 9 7 18 23 7 72 2 3 9 2 1 99 1 0 60 chain 51750 chr2 243199373 + 138711609 138712245 PABL_A 660 - 10 660 57788 111 0 5 441 1 10 83 chain 467840 chr2 243199373 + 138749482 138755688 L1PA8A 6298 + 40 6281 8116 16 1 0 11 26 16 16 3 0 25 3 0 4 7 0 20 10 28 13 2 0 15 7 4 13 2 1 7 2 1 5 1 0 8 1 0 14 30 23 27 30 23 92 1 0 9 6 4 79 1 0 14 7 9 70 5 6 158 0 1 4 28 53 262 0 1 19 40 34 394 5 5 37 0 27 182 1 2 86 7 10 10 0 1 65 0 3 70 6 5 32 0 1 326 7 0 174 0 4 13 0 1 162 0 4 206 0 4 233 1 0 20 3 4 126 2 3 11 4 0 55 0 4 544 2 1 237 8 6 954 1 0 801 0 3 103 0 2 113 1 2 90 chain 24173 chr2 243199373 + 138760546 138760812 L1PA3long 6157 + 5889 6155 109363 266 chain 35587 chr2 243199373 + 138801242 138801665 L1PA6 6164 + 5728 6152 75426 287 1 2 135 chain 24894 chr2 243199373 + 138806002 138806365 THE1B 368 + 0 367 105387 169 1 0 29 0 3 8 41 43 115 chain 14958 chr2 243199373 + 138826267 138826459 L1PA7 6471 - 2 195 141451 147 8 9 37 chain 26248 chr2 243199373 + 138843049 138843495 L1PA11 4918 - 340 761 99027 11 2 0 13 1 0 15 13 9 8 2 0 5 3 0 9 4 0 20 1 0 14 2 0 67 2 0 13 7 6 9 1 2 4 0 1 16 0 1 7 1 0 14 8 3 174 chain 105364 chr2 243199373 + 138898821 138899992 L1PA5 6144 - 376 1549 35408 983 0 2 188 chain 32664 chr2 243199373 + 138899992 138900365 L1PA5 6144 + 5769 6142 79740 373 chain 3893 chr2 243199373 + 138904325 138904371 MADE1 96 + 0 46 208966 46 chain 24557 chr2 243199373 + 138914096 138914497 MER57A1 433 - 10 432 107215 43 53 43 54 0 1 172 15 45 64 chain 35360 chr2 243199373 + 138956381 138956822 L1PA7 6471 + 6032 6461 75718 164 4 0 122 3 4 102 10 1 36 chain 112609 chr2 243199373 + 138961957 138963521 THE1B-int 1605 - 5 1605 33502 53 0 1 58 7 3 686 19 21 81 3 9 41 13 17 149 30 55 8 1 0 37 0 1 336 7 6 4 0 1 12 6 8 13 chain 23006 chr2 243199373 + 138983139 138983380 AluYa5 310 - 11 252 115596 241 chain 3253 chr2 243199373 + 139009182 139009218 MER3 215 - 19 55 219932 36 chain 23084 chr2 243199373 + 139010933 139011224 AluSp 311 - 18 311 115220 16 7 9 268 chain 60551 chr2 243199373 + 139011402 139012199 LTR12 884 + 0 883 52543 14 0 1 208 0 2 11 1 5 5 0 66 66 2 0 166 1 2 211 0 8 33 0 6 79 chain 257716 chr2 243199373 + 139014157 139017112 L1PA4 6152 + 3145 6140 15827 725 6 8 59 2 3 210 0 29 172 0 4 669 0 1 279 0 4 8 1 0 4 0 1 577 1 0 242 chain 16374 chr2 243199373 + 139018713 139019273 L1PREC2 3366 - 318 836 53756 35 9 7 35 22 8 11 4 1 29 2 0 16 6 1 18 28 20 13 3 0 4 1 0 44 4 3 51 2 0 11 1 0 211 chain 79190 chr2 243199373 + 139019279 139020361 MER11A 1151 + 0 1151 43951 55 0 99 76 1 0 64 4 0 149 0 1 94 0 1 145 5 6 120 0 26 26 43 0 22 18 0 38 0 1 62 5 11 155 chain 10204 chr2 243199373 + 139020361 139020710 L1PREC2 3366 - 836 1184 53756 43 1 0 305 chain 5774 chr2 243199373 + 139020721 139020789 MLT1A0 366 - 218 286 187405 68 chain 62655 chr2 243199373 + 139030734 139031481 LTR17 781 - 7 781 51607 42 0 22 243 0 1 139 1 0 123 0 1 169 0 4 30 chain 152774 chr2 243199373 + 139044313 139047848 L1PA5 6144 - 9 1762 24257 302 0 1 57 1783 0 1393 chain 94991 chr2 243199373 + 139047848 139048908 L1PA5 6144 + 3324 4385 38069 33 1 2 1026 chain 10355 chr2 243199373 + 139063379 139063501 L1PA4 6152 - 0 128 158879 10 0 6 112 chain 22726 chr2 243199373 + 139072137 139072456 THE1A 353 - 0 315 116951 12 1 0 83 4 3 113 1 0 32 6 5 67 chain 126681 chr2 243199373 + 139072499 139074066 THE1A-int 1579 - 5 1579 28895 223 8 9 210 1 2 179 0 1 18 2 1 170 7 8 55 0 3 683 0 1 11 chain 24767 chr2 243199373 + 139074078 139074408 THE1A 353 - 12 353 106074 231 6 5 15 5 17 73 chain 44322 chr2 243199373 + 139089274 139090036 L1PB1 5432 - 2 715 63801 11 2 0 15 1 0 11 0 3 12 14 8 24 2 0 14 8 5 30 18 5 12 1 0 44 1 0 15 2 1 52 2 0 10 4 0 12 1 0 7 2 1 24 13 11 102 1 0 4 1 2 87 4 6 94 12 0 34 2 0 57 chain 18292 chr2 243199373 + 139100318 139100743 MSTA 426 + 0 426 132095 19 0 30 7 33 3 38 13 11 35 13 19 28 78 74 35 11 12 115 chain 56729 chr2 243199373 + 139127919 139128545 L1PA4 6152 - 0 631 54701 17 0 5 609 chain 20976 chr2 243199373 + 139135421 139135715 L1PA8 5853 - 0 288 124009 92 5 4 16 2 1 51 1 0 10 1 0 71 2 0 43 chain 34505 chr2 243199373 + 139161140 139161604 LTR3B_ 500 + 0 446 76896 206 0 1 34 4 7 55 0 1 103 0 2 17 25 0 20 chain 75355 chr2 243199373 + 139183250 139184341 MER11B 1079 + 0 1079 45840 363 1 2 60 4 3 95 0 1 138 12 11 45 1 0 23 43 61 8 32 0 15 0 1 53 0 1 29 0 1 7 0 1 131 2 1 29 chain 23753 chr2 243199373 + 139213894 139214192 AluSp 311 - 5 300 111755 24 8 6 99 1 0 166 chain 6068 chr2 243199373 + 139218820 139218899 THE1D-int 1627 - 5 84 184674 27 1 0 5 0 1 46 chain 77265 chr2 243199373 + 139218900 139220442 L1PA7 6471 - 2 992 44845 11 0 2 134 15 16 172 1 2 450 555 0 68 1 0 70 0 1 5 2 1 58 chain 37645 chr2 243199373 + 139223518 139223931 L1PA3long 6157 - 1051 1464 72507 413 chain 96751 chr2 243199373 + 139223931 139224996 L1PA3long 6157 + 5087 6155 37633 395 0 3 670 chain 135275 chr2 243199373 + 139240803 139242315 L1PA5 6144 + 4613 6128 26958 1278 0 4 189 1 0 44 chain 20797 chr2 243199373 + 139282632 139282965 THE1B 368 - 11 361 124612 55 0 2 6 1 0 54 32 42 25 2 1 73 5 9 45 0 5 27 2 0 6 chain 33656 chr2 243199373 + 139294741 139295185 LTR2 463 - 20 463 78159 32 1 0 30 0 1 4 7 8 4 1 0 52 1 0 312 chain 538106 chr2 243199373 + 139296328 139302452 L1PA4 6152 - 9 6152 3133 213 2 1 806 0 1 109 0 4 654 0 4 557 3 0 7 0 3 435 0 3 87 0 5 77 1 0 392 0 2 1060 0 1 770 0 2 586 1 0 364 chain 4500 chr2 243199373 + 139324120 139324191 MADE1 96 + 9 96 200775 15 9 25 47 chain 5191 chr2 243199373 + 139346692 139346749 MER44B 551 - 94 151 193138 57 chain 2841 chr2 243199373 + 139350414 139350470 L1MC4 1079 - 264 320 228068 26 10 11 12 1 0 7 chain 3661 chr2 243199373 + 139379814 139379856 LTR35 598 - 507 550 212553 27 0 1 15 chain 5054 chr2 243199373 + 139398541 139398602 MIRb 242 + 68 129 194588 61 chain 43005 chr2 243199373 + 139402188 139402737 LTR10F 562 - 0 562 65408 331 3 28 139 4 0 14 8 0 50 chain 10027 chr2 243199373 + 139406827 139406949 LTR26E 604 - 482 604 160441 122 chain 144262 chr2 243199373 + 139444123 139445758 L1PA5 6144 - 0 1649 25436 252 2 1 596 0 3 229 7 18 18 0 1 531 chain 22678 chr2 243199373 + 139492821 139493188 THE1B 368 - 0 368 117175 49 5 13 33 2 1 73 37 30 51 6 7 111 chain 118042 chr2 243199373 + 139493195 139494725 THE1B-int 1605 - 7 1571 31789 10 0 1 188 1 0 157 0 2 535 1 0 5 11 12 28 0 1 139 2 3 52 0 2 6 0 25 18 0 1 75 0 2 302 chain 7362 chr2 243199373 + 139508374 139508466 MSTA 426 + 0 93 175019 28 0 1 64 chain 7688 chr2 243199373 + 139525028 139525114 L1PA8 5853 - 0 86 172995 86 chain 22397 chr2 243199373 + 139529897 139530166 AluSp 311 - 43 311 118498 148 1 0 120 chain 332485 chr2 243199373 + 139546673 139551625 L1PA11 4918 - 290 4910 12111 17 24 17 11 12 5 11 2 0 12 1 0 12 35 26 7 5 0 14 7 8 13 2 0 66 2 0 15 2 1 53 18 6 7 1 0 155 0 9 117 312 0 26 0 1 26 4 6 107 0 1 219 2 0 127 0 4 241 0 8 83 5 6 11 0 14 162 0 7 9 1 0 203 0 1 92 1 0 63 0 11 10 0 1 59 13 1 150 0 1 28 5 9 30 2 1 34 0 5 40 13 10 31 1 0 12 8 0 382 10 7 262 5 0 280 0 1 209 3 4 61 3 0 5 18 21 339 0 1 55 1 7 167 1 0 176 2 1 5 2 0 24 9 8 53 2 0 7 7 6 36 7 4 33 2 0 28 1 0 6 chain 522084 chr2 243199373 + 139553224 139559656 L1PA7 6471 + 3 6461 4948 408 0 1 13 0 9 25 0 1 9 0 1 710 0 2 577 1 0 36 6 7 130 0 1 283 0 3 52 0 1 141 0 4 289 4 8 386 0 4 258 1 2 120 4 2 87 0 1 166 0 1 88 2 0 589 0 1 155 1 0 4 0 1 90 1 9 433 1 0 200 4 6 180 11 1 123 1 0 834 3 0 6 chain 46945 chr2 243199373 + 139618487 139619082 LTR14C 587 - 0 581 61264 36 9 8 103 21 5 68 0 1 89 0 2 269 chain 42447 chr2 243199373 + 139629448 139629921 SVA_D 2077 - 169 645 66081 26 0 3 447 chain 12027 chr2 243199373 + 139630069 139630202 SVA_E 1901 + 1762 1895 152087 133 chain 16700 chr2 243199373 + 139633383 139633613 L1PA8 5853 - 0 226 136407 93 1 0 19 2 1 47 1 0 14 1 0 52 chain 22481 chr2 243199373 + 139634256 139634614 THE1B 368 - 2 368 118103 47 14 13 61 43 53 22 2 1 169 chain 12182 chr2 243199373 + 139646527 139646671 L1PA7 6471 + 3331 3476 151484 114 0 1 30 chain 10890 chr2 243199373 + 139646680 139646816 L1PA7 6471 + 3486 3622 156623 136 chain 15972 chr2 243199373 + 139646816 139647041 L1PA7 6471 + 3623 3829 138444 167 25 0 14 0 6 19 chain 38183 chr2 243199373 + 139647041 139647486 L1PA7 6471 + 3830 4275 71865 145 1 0 33 0 1 266 chain 23457 chr2 243199373 + 139647487 139647765 L1PA7 6471 + 4278 4556 113336 278 chain 8589 chr2 243199373 + 139647766 139647874 L1PA7 6471 + 4558 4669 167794 40 0 1 8 0 2 60 chain 22923 chr2 243199373 + 139647874 139648197 L1PA7 6471 + 4670 5030 115997 118 1 0 9 6 8 45 0 35 64 5 6 75 chain 89515 chr2 243199373 + 139648508 139649593 L1PA7 6471 + 5028 6118 39804 171 0 4 418 1 0 4 1 0 73 0 2 343 1 2 73 chain 28838 chr2 243199373 + 139649593 139649942 L1PA7 6471 + 6119 6468 89730 349 chain 60281 chr2 243199373 + 139669600 139670355 THE1B-int 1605 - 0 768 52693 128 0 10 572 6 9 49 chain 28843 chr2 243199373 + 139670419 139670761 L1PA7 6471 + 6091 6438 89698 86 0 1 38 0 1 126 0 3 92 chain 237474 chr2 243199373 + 139688910 139692320 L1PA8A 6298 + 34 5619 16910 6 1 0 16 1 0 14 5 0 7 6 0 25 3 0 17 19 11 17 2 1 9 2 1 15 1 0 4 2 1 11 2 0 13 2 0 6 1 0 8 61 50 29 17 15 25 12 0 64 10 8 19 1 0 7 4 2 78 1 0 91 1 0 69 6 5 131 1 15 177 4 2214 47 0 1 29 0 1 79 26 20 304 0 1 181 0 1 33 9 18 200 0 1 261 0 2 110 0 1 169 0 5 404 13 13 127 0 1 8 0 1 4 1 0 71 0 1 271 5 4 35 chain 497455 chr2 243199373 + 139694487 139700683 L1PA6 6164 - 2 6164 6983 347 0 8 151 0 2 338 2 1 1013 0 2 183 0 1 163 0 1 246 51 26 489 3 1 494 10 0 362 14 0 533 5 10 56 0 1 285 2 0 5 9 11 320 1 2 22 0 3 207 1 2 225 14 15 68 1 0 120 8 0 21 0 2 224 8 8 33 1 0 161 chain 12575 chr2 243199373 + 139747619 139747772 MER41B 635 + 481 635 149940 30 0 1 123 chain 30476 chr2 243199373 + 139754262 139754680 MLT2A1 477 - 54 477 83480 39 0 2 103 2 1 73 1 0 32 7 11 19 0 1 21 0 1 4 3 2 114 chain 8236 chr2 243199373 + 139768311 139768412 L1PA7 6471 - 2 103 169745 11 1 0 82 0 1 7 chain 61052 chr2 243199373 + 139768427 139769147 L1PA7 6471 + 5651 6381 52307 25 0 10 695 chain 56443 chr2 243199373 + 139785319 139785925 L1HS 6032 - 6 615 54881 165 0 1 200 0 2 241 chain 3412 chr2 243199373 + 139847728 139847766 MER66B 489 + 295 333 216906 38 chain 65321 chr2 243199373 + 139861091 139861797 L1PA2 6032 + 5324 6030 50415 706 chain 190135 chr2 243199373 + 139862744 139865137 L1PA8A 6298 - 8 2412 20034 13 0 1 28 2 1 47 0 1 15 6 5 342 1 2 265 45 43 36 0 3 250 0 1 825 0 8 518 chain 132801 chr2 243199373 + 139865137 139866845 L1PA8A 6298 + 2170 3900 27460 53 0 2 7 2 0 13 0 2 260 8 9 169 0 1 712 1 0 61 6 12 77 0 3 235 0 9 78 1 2 25 chain 8350 chr2 243199373 + 139885934 139886050 LTR8 732 + 586 702 169119 15 3 0 7 0 3 91 chain 7487 chr2 243199373 + 139918059 139918147 L1PA8 5853 + 5760 5848 174223 88 chain 5074 chr2 243199373 + 139928789 139928863 MADE1 96 - 1 91 194369 17 1 0 19 1 17 15 0 1 21 chain 7111 chr2 243199373 + 139948691 139948796 L1MA3 4352 - 80 181 176673 14 2 0 23 3 0 36 0 1 27 chain 115485 chr2 243199373 + 139957584 139958857 L1PA3long 6157 - 0 1266 32613 1039 11 4 223 chain 448951 chr2 243199373 + 139966203 139972167 HERVL-int 5654 + 0 5652 8790 213 11 6 179 0 1 5 0 1 239 12 5 141 9 7 166 0 5 121 3 5 437 0 1 325 0 1 4 1 0 201 8 17 184 327 4 54 0 1 4 5 4 389 14 0 7 0 14 160 19 0 8 1 13 101 6 10 44 1 4 576 4 7 300 3 4 11 0 1 450 10 9 785 0 1 204 0 1 222 chain 29510 chr2 243199373 + 139972169 139972571 MLT2A1 477 + 0 477 86605 141 1 2 26 0 4 106 1 0 45 1 0 51 6 78 24 chain 22172 chr2 243199373 + 139976561 139976833 THE1B-int 1605 + 1325 1598 119485 267 0 1 5 chain 25465 chr2 243199373 + 140044484 140045157 L1PB1 5432 + 4691 5422 102377 112 6 7 14 0 12 15 52 161 82 50 20 24 1 0 8 1 0 9 30 24 40 1 0 17 1 0 44 1 0 12 116 95 4 1 0 13 1 0 18 chain 298563 chr2 243199373 + 140065510 140068794 L1PA3long 6157 + 2868 6157 13499 2574 0 1 103 0 3 449 2 0 8 3 6 145 chain 283033 chr2 243199373 + 140104004 140107449 L1PA7 6471 - 5 3448 14467 9 1 0 550 0 1 165 0 1 124 1 0 172 0 1 4 9 8 133 0 1 718 0 1 4 1 0 1021 0 4 63 9 2 461 chain 54166 chr2 243199373 + 140107465 140108100 L1PA7 6471 + 2374 3012 56250 324 1 3 7 0 1 303 chain 111896 chr2 243199373 + 140129686 140130918 L1PA3long 6157 + 4925 6156 33692 1227 1 0 4 chain 16202 chr2 243199373 + 140134387 140134678 THE1B 368 - 62 368 137745 63 52 63 11 1 0 46 10 15 108 chain 102125 chr2 243199373 + 140167728 140168937 LTR12C 1709 + 0 1709 36228 253 0 1 319 6 5 72 0 485 89 0 4 32 0 6 174 0 1 67 6 10 191 chain 97620 chr2 243199373 + 140171526 140172936 L1PB1 5432 - 44 1413 37392 18 1 0 24 2 0 8 7 6 5 2 0 19 1 0 9 10 0 3 3 0 12 7 6 42 1 0 15 2 1 53 15 9 12 5 4 4 1 0 24 5 0 7 2 5 336 11 8 128 4 0 471 2 1 139 chain 32293 chr2 243199373 + 140182109 140182485 L1PA7 6471 + 6080 6456 80372 376 chain 67397 chr2 243199373 + 140201166 140201906 L1P1 4361 + 1417 2157 49486 740 chain 24280 chr2 243199373 + 140276641 140277002 THE1C 375 + 0 373 108777 106 29 37 39 13 13 64 0 4 110 chain 557934 chr2 243199373 + 140290392 140296542 L1PA3long 6157 - 5 6157 507 1481 1 0 456 1 2 1523 1 0 1594 0 3 1093 chain 21303 chr2 243199373 + 140304006 140304275 L1PBa 3878 - 1977 2246 122849 269 chain 3972 chr2 243199373 + 140312991 140313043 L1MA7 2200 - 2145 2197 207801 10 1 0 8 0 1 33 chain 77744 chr2 243199373 + 140382656 140383715 MER11C 1089 - 16 1089 44636 8 0 1 134 11 10 16 1 2 36 0 1 127 0 1 38 1 0 7 0 4 18 0 1 91 51 46 146 1 0 66 1 5 60 0 9 246 chain 167299 chr2 243199373 + 140404425 140406599 L1PA8 5853 - 0 2179 22357 93 1 0 19 2 1 41 11 11 9 1 0 41 0 2 18 0 4 6 2 0 46 8 7 461 1 0 79 6 4 24 0 4 36 0 1 60 4 0 138 0 1 28 1 3 316 0 1 137 0 1 20 0 1 180 8 11 30 1 0 13 2 1 331 chain 249030 chr2 243199373 + 140406600 140409692 L1PA8 5853 + 591 3659 16309 148 4 3 402 9 11 188 0 1 13 0 1 391 1 0 269 12 0 62 1 0 29 17 6 267 0 2 232 1 0 224 16 12 787 5 6 14 chain 19555 chr2 243199373 + 140418828 140419075 AluSp 311 + 55 296 128505 14 6 0 227 chain 59757 chr2 243199373 + 140430824 140431908 MER4E 760 + 0 760 52957 170 7 0 10 0 1 42 0 2 219 312 0 131 0 1 5 14 5 174 chain 14560 chr2 243199373 + 140438088 140438277 MER50B 698 - 239 429 142707 65 1 2 123 chain 27535 chr2 243199373 + 140453529 140453818 AluYb9 318 - 29 318 94555 289 chain 4488 chr2 243199373 + 140488271 140488339 MER4C 627 + 560 627 200923 51 4 3 13 chain 53492 chr2 243199373 + 140501494 140502201 LTR12 884 + 0 869 56689 130 2 0 57 0 157 33 2 0 85 0 4 97 6 14 122 15 12 158 chain 84488 chr2 243199373 + 140510943 140514698 L1MA1 4479 - 294 3775 41719 13 7 0 9 3 1 10 1 0 10 1 0 29 8 6 30 1 0 124 0 389 44 3 0 6 9 10 82 8 12 22 3 0 107 50 45 15 1 5 40 9 6 12 2 0 92 1 0 83 2 0 25 1 0 7 4 3 82 1 0 62 18 19 14 2 0 71 2255 1625 289 13 5 11 24 27 39 chain 15670 chr2 243199373 + 140564673 140565018 THE1B 368 - 0 368 139365 37 49 64 14 58 63 21 1 0 97 6 10 62 chain 99524 chr2 243199373 + 140577867 140578979 L1PA4 6152 - 13 1124 36898 143 1 0 968 chain 57768 chr2 243199373 + 140578979 140579622 L1PA4 6152 + 4415 5058 53955 643 chain 4065 chr2 243199373 + 140585227 140585277 MER34A1 583 + 0 50 206415 50 chain 56250 chr2 243199373 + 140598084 140599030 L1MA1 4479 - 289 1203 54995 18 7 0 12 34 30 25 4 0 13 1 0 4 0 1 135 3 0 6 1 0 59 0 5 23 1 0 14 2 0 19 1 0 71 1 0 6 13 11 22 8 7 116 20 21 18 0 1 33 2 0 131 5 0 78 13 8 27 chain 14876 chr2 243199373 + 140610445 140610703 THE1D 372 + 92 347 141696 65 1 0 4 60 59 4 1 0 123 chain 19983 chr2 243199373 + 140610730 140610980 THE1D-int 1627 + 0 250 127198 250 chain 34852 chr2 243199373 + 140625183 140625732 MLT2A2 560 + 0 560 76405 165 69 68 144 25 36 74 0 1 72 chain 31865 chr2 243199373 + 140629539 140630099 LTR9B 643 + 0 585 81074 39 3 5 8 1 0 9 13 36 90 6 7 10 1 0 58 13 15 57 11 10 67 46 47 54 6 5 68 chain 87193 chr2 243199373 + 140636094 140637037 L1HS 6032 - 0 943 40691 943 chain 92704 chr2 243199373 + 140637037 140638061 L1P1 4361 + 3182 4205 38745 969 1 0 54 chain 66143 chr2 243199373 + 140641300 140642101 L1PA7 6471 + 5652 6452 50028 48 0 2 85 3 0 665 chain 1960 chr2 243199373 + 140670099 140670206 L1PA4 6152 - 217 324 125405 107 chain 76499 chr2 243199373 + 140670212 140671085 MER11D 897 - 0 897 45211 113 0 1 186 0 23 28 1 0 4 0 2 259 1 0 281 chain 2509 chr2 243199373 + 140671085 140671222 L1PA4 6152 - 324 461 125405 137 chain 12926 chr2 243199373 + 140671223 140671383 L1PA4 6152 + 5985 6152 148524 22 0 2 132 0 5 6 chain 182006 chr2 243199373 + 140685367 140687389 L1PA3long 6157 - 8 2031 20784 138 0 2 720 1 0 1163 chain 184568 chr2 243199373 + 140687399 140689426 L1PA3long 6157 + 2114 4143 20539 1056 0 1 516 0 1 455 chain 104600 chr2 243199373 + 140693509 140694966 L1PA8 5853 - 0 1464 35596 93 1 0 19 2 1 24 32 31 6 1 0 57 0 4 10 2 0 44 1 0 203 6 5 54 1 0 207 19 18 47 9 16 6 0 2 395 0 3 83 4 5 131 chain 119590 chr2 243199373 + 140716698 140718222 THE1A-int 1579 + 30 1567 31183 5 0 3 445 5 6 152 3 6 527 5 11 382 chain 27407 chr2 243199373 + 140718240 140718588 THE1A 353 + 7 353 94944 75 0 1 25 5 2 243 chain 71739 chr2 243199373 + 140744161 140744959 L1PA3long 6157 - 0 798 47594 153 8 6 268 0 2 369 chain 109592 chr2 243199373 + 140747395 140748832 LTR12C 1709 - 0 1709 34301 9 1 0 75 1 0 134 3 6 228 31 7 22 0 4 99 20 9 4 1 0 184 10 318 142 11 4 100 0 1 121 0 1 241 chain 30111 chr2 243199373 + 140766262 140766579 AluYb9 318 - 1 318 84453 317 chain 3868 chr2 243199373 + 140797863 140797907 L1MCa 1829 + 1362 1406 209329 44 chain 9324 chr2 243199373 + 140812175 140812284 L1PA7 6471 + 6357 6466 163924 109 chain 112050 chr2 243199373 + 140831182 140832494 LTR12C 1709 + 0 1709 33650 196 0 6 51 0 1 134 0 10 252 0 278 184 1 0 5 3 1 48 1 0 58 0 4 168 0 102 211 chain 24603 chr2 243199373 + 140912739 140913057 THE1A 353 - 38 353 106980 144 2 0 51 13 12 108 chain 28049 chr2 243199373 + 140919151 140919596 L1PA11 4918 + 4084 4517 92829 210 16 20 14 5 0 13 1 0 54 1 0 4 10 8 68 2 0 13 2 1 19 4 0 9 chain 74522 chr2 243199373 + 140960098 140961076 Charlie3 2679 - 472 1465 46256 192 1 3 48 8 16 107 2 0 147 0 6 131 1 0 4 0 1 257 8 9 72 chain 36517 chr2 243199373 + 140964955 140965549 L1PA15 4387 + 3717 4313 74217 15 0 11 7 1 0 63 0 2 76 3 1 41 1 0 76 0 4 91 1 0 27 1 0 24 1 2 25 4 3 20 22 17 34 17 14 12 1 0 31 chain 41557 chr2 243199373 + 140968875 140969826 MER41B 635 - 0 635 67211 81 0 5 77 30 29 99 2 1 63 357 38 115 1 2 32 1 0 93 chain 101146 chr2 243199373 + 140976008 140977229 L1PA5 6144 - 3 1202 36477 275 35 9 388 0 2 134 0 4 42 6 4 341 chain 4195 chr2 243199373 + 140978029 140978076 tRNA-Gln-CAA_ 72 + 25 72 204625 47 chain 68183 chr2 243199373 + 141048888 141049674 L1PA5 6144 - 7 794 49170 329 1 2 456 chain 283053 chr2 243199373 + 141061233 141064504 L1PA5 6144 - 4 3280 14464 144 1 0 445 22 22 19 0 1 207 1 5 952 0 4 1171 4 1 305 chain 10931 chr2 243199373 + 141081061 141081182 L1PA4 6152 + 6030 6151 156482 121 chain 50051 chr2 243199373 + 141086810 141087495 L1PA10 4194 + 3428 4102 58985 18 0 3 77 0 1 399 24 26 125 17 0 25 chain 76317 chr2 243199373 + 141172101 141173174 MER11A 1151 + 2 1146 45307 83 0 91 54 0 4 60 4 0 32 0 2 115 0 1 94 5 6 140 5 6 53 0 4 88 25 1 11 5 12 25 18 0 36 0 1 62 0 1 127 7 11 24 chain 29645 chr2 243199373 + 141183962 141184370 LTR7 482 + 2 482 86088 67 8 46 109 8 40 43 0 1 4 1 0 70 0 2 98 chain 277080 chr2 243199373 + 141184372 141187744 HERVH-int 3825 + 0 3823 14809 333 1 0 62 27 26 25 86 45 5 0 2 17 0 1 6 5 273 358 1 0 433 0 5 409 0 6 131 0 1 932 9 11 39 0 210 493 chain 29653 chr2 243199373 + 141189560 141189960 LTR7 482 + 0 470 86058 69 8 46 110 7 39 206 chain 28566 chr2 243199373 + 141276178 141276518 L1PA6 6164 - 1675 2019 89809 123 0 4 65 1 0 110 5 6 36 chain 142024 chr2 243199373 + 141276518 141278173 L1PA6 6164 + 4492 6154 25819 68 0 1 4 1 0 839 1 0 11 1 0 146 0 8 224 0 1 360 chain 13384 chr2 243199373 + 141303314 141303562 L1PA13 3608 - 217 460 146769 26 57 55 35 2 0 115 1 0 12 chain 27946 chr2 243199373 + 141303919 141304296 THE1C 375 - 0 375 93182 25 1 0 39 2 1 124 2 0 8 0 2 176 chain 65191 chr2 243199373 + 141405257 141406015 L1PA5 6144 + 5383 6142 50479 611 0 1 147 chain 30100 chr2 243199373 + 141408753 141409081 L1PA2 6032 + 5701 6029 84492 328 chain 6757 chr2 243199373 + 141437547 141437638 MER30 238 + 141 235 179270 48 1 4 42 chain 17044 chr2 243199373 + 141483076 141483264 L1PA5 6144 + 5956 6144 135482 188 chain 54840 chr2 243199373 + 141497322 141498224 L1PB1 5432 + 4544 5427 55806 84 0 1 84 0 1 66 22 14 10 7 15 104 0 2 58 0 1 11 0 3 6 10 13 86 13 11 20 1 0 11 7 6 7 4 0 9 2 0 53 0 3 14 1 0 59 3 0 8 13 4 15 7 5 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 10954 chr2 243199373 + 141523473 141523592 L1PA4 6152 + 6032 6151 156382 119 chain 7505 chr2 243199373 + 141525221 141525301 L1PA2 6032 - 5 85 174129 80 chain 29672 chr2 243199373 + 141547188 141547498 AluYa5 310 - 0 310 85939 310 chain 15905 chr2 243199373 + 141557349 141557536 L1P1 4361 + 4 191 138637 187 chain 34751 chr2 243199373 + 141557564 141557979 L1PA5 6144 + 5731 6143 76541 395 1 0 9 2 0 8 chain 27042 chr2 243199373 + 141595188 141595518 L1PA4 6152 + 5821 6152 96141 63 2 1 94 3 0 162 0 5 6 chain 36738 chr2 243199373 + 141596868 141597396 MLT2A2 560 + 0 558 73900 170 2 10 12 5 13 106 0 1 93 8 20 65 0 1 5 0 1 5 16 15 41 chain 186016 chr2 243199373 + 141632066 141635058 MER4-int 2692 + 1 2692 20414 10 1 0 15 0 1 6 5 3 11 19 18 34 2 0 18 9 1 101 307 0 308 12 21 105 0 3 54 10 9 50 14 27 15 7 3 14 6 8 23 0 1 145 0 4 168 20 24 246 0 1 4 1 2 12 1 0 5 0 1 6 0 1 26 7 5 320 13 12 179 7 4 163 0 2 5 0 1 5 3 0 71 1 0 3 3 0 120 0 7 7 21 8 259 0 1 15 chain 11693 chr2 243199373 + 141659037 141659212 L1MA3 4352 - 35 208 153510 29 9 7 23 2 0 25 0 1 30 0 2 23 1 0 33 chain 18892 chr2 243199373 + 141673375 141673619 AluY 311 + 60 300 130389 72 0 1 160 5 0 7 chain 85291 chr2 243199373 + 141721419 141722411 LTR13 1007 - 0 1007 41422 243 1 10 220 0 4 100 3 1 180 1 5 244 chain 437003 chr2 243199373 + 141723130 141728235 L1PA5 6144 - 4 6144 9125 151 1 0 73 0 2 21 0 2 6 11 9 71 1 0 117 0 1 297 0 3 86 0 4 150 0 5 52 0 1 741 0 4 464 2 1 205 0 11 416 0 4 74 8 5 784 0 3 185 0 3 21 0 1 149 1 0 177 0 4 98 2 0 601 0 2 48 0 996 92 chain 21854 chr2 243199373 + 141729132 141729411 AluY 311 + 8 291 120803 37 2 8 12 3 0 67 0 1 158 chain 15279 chr2 243199373 + 141738229 141738448 L1PB2 3958 + 3624 3838 140546 57 1 0 74 2 0 19 2 1 37 1 0 26 chain 21871 chr2 243199373 + 141758891 141759164 L1PA5 6144 - 0 274 120745 144 5 6 124 chain 94123 chr2 243199373 + 141791874 141792920 L1PA3long 6157 + 5092 6143 38320 220 0 3 587 1 3 238 chain 143015 chr2 243199373 + 141801426 141803001 L1PA2 6032 + 4455 6028 25652 792 0 1 766 3 0 14 chain 17772 chr2 243199373 + 141807911 141808173 L1PA8 5853 - 0 255 133503 19 0 1 33 3 0 39 2 1 19 2 1 58 1 0 74 2 0 10 chain 69884 chr2 243199373 + 141808176 141809083 L1PA8 5853 + 4668 5581 48446 56 0 2 285 1 3 69 5 7 328 0 1 141 7 6 15 chain 25806 chr2 243199373 + 141815021 141815373 THE1B 368 + 0 368 100844 44 0 15 12 1 0 101 1 0 26 17 21 74 1 0 75 chain 35782 chr2 243199373 + 141827374 141827764 L1PA3long 6157 - 0 390 75160 390 chain 134302 chr2 243199373 + 141827767 141829284 L1P1 4361 + 2825 4341 27151 1285 0 2 38 1 0 155 1 0 23 2 1 12 chain 4812 chr2 243199373 + 141861711 141861770 L1PA16 3655 - 103 162 197215 59 chain 6530 chr2 243199373 + 141869667 141869749 MER61D 487 + 387 468 181009 17 1 0 64 chain 160268 chr2 243199373 + 141879006 141880821 L1PA5 6144 + 4320 6144 23299 302 2 0 285 0 1 386 8 10 506 0 1 182 1 8 143 chain 19991 chr2 243199373 + 141884446 141884719 L1PA7 6471 - 12 290 127167 35 6 10 90 18 19 124 chain 38157 chr2 243199373 + 141884722 141885170 L1PA7 6471 + 5724 6173 71899 428 0 1 20 chain 28744 chr2 243199373 + 141888310 141888704 L1PA8 5853 + 5411 5847 90152 153 1 0 46 2 0 67 25 67 16 1 0 52 0 4 31 chain 8298 chr2 243199373 + 141913055 141913152 L1PA7 6471 - 3 105 169409 11 0 5 86 chain 23782 chr2 243199373 + 141917380 141917667 L1PA8A 6298 + 5999 6291 111586 242 2 7 43 chain 10114 chr2 243199373 + 141924039 141924187 L1MA3 4352 - 74 218 160015 18 2 0 24 4 0 32 0 2 68 chain 85653 chr2 243199373 + 141960564 141961677 L1P2 5180 + 1948 3070 41291 359 10 5 5 0 2 9 1 5 48 0 1 9 0 3 145 5 3 4 1 0 29 2 9 486 chain 9761 chr2 243199373 + 141970384 141970540 MER6A 605 - 30 182 161790 25 19 16 97 1 0 14 chain 254164 chr2 243199373 + 141977284 141981131 L1PA10 4194 + 250 4116 16022 21 2 0 15 77 48 19 1 0 8 6 5 8 1 0 6 1 0 14 4 0 9 1 0 18 36 43 20 2 0 71 23 27 7 4 0 56 0 4 14 0 1 93 0 1 56 6 5 67 0 3 22 0 2 43 3 4 53 0 3 48 1 10 51 0 3 19 16 8 136 9 0 122 0 1 34 0 1 4 5 4 15 0 11 97 0 9 215 0 2 21 16 7 118 9 11 57 0 3 5 31 9 246 8 0 10 0 8 286 17 19 16 6 36 21 0 4 29 4 6 11 5 7 80 0 1 89 5 13 43 3 4 208 2 0 81 15 8 181 0 2 322 6 7 131 26 25 16 0 4 26 0 1 138 chain 16519 chr2 243199373 + 142067183 142067394 L1PA8A 6298 + 6081 6291 136861 126 2 1 83 chain 46487 chr2 243199373 + 142142074 142142654 LTR14C 587 + 0 587 61613 440 11 18 129 chain 27865 chr2 243199373 + 142178815 142179114 AluYa5 310 + 0 298 93477 132 1 0 166 chain 131432 chr2 243199373 + 142182492 142183944 L1PA3long 6157 - 2 1454 27768 921 0 1 4 1 0 526 chain 20042 chr2 243199373 + 142184451 142184686 L1PA7 6471 - 6 242 127006 155 1 2 79 chain 517678 chr2 243199373 + 142200000 142206420 L1PA7 6471 - 1 6466 5403 497 0 1 69 12 10 29 0 1 242 1 0 73 0 1 7 1 0 148 0 2 441 3 0 135 0 1 32 4 5 42 2 1 203 0 1 52 1 5 924 0 4 20 0 1 355 4 5 63 10 14 375 0 10 61 1 0 87 0 1 450 9 7 243 4 5 451 0 3 330 2 1 539 3 4 191 0 20 76 1 0 227 chain 13400 chr2 243199373 + 142219983 142220183 L1PA8 5853 + 5612 5808 146716 67 1 0 8 2 1 51 5 4 17 4 3 45 chain 174534 chr2 243199373 + 142240534 142242467 L1PA4 6152 - 1 1936 21536 147 0 1 992 0 1 794 chain 12399 chr2 243199373 + 142282050 142282235 MER30 238 + 26 229 150640 24 1 0 44 19 38 97 chain 457315 chr2 243199373 + 142327796 142334130 L1PA8A 6298 + 46 6292 8498 12 32 21 12 5 0 5 1 3 20 19 11 18 1 0 9 2 1 12 1 0 7 1 0 12 24 20 11 12 10 5 1 0 8 1 0 9 20 13 43 1 0 20 14 2 16 23 20 41 2 0 10 6 5 11 4 2 33 1 0 160 1 0 153 7 4 289 7 6 30 45 40 23 2 0 29 17 14 170 1 2 57 1 2 596 0 1 190 1 0 110 0 1 158 15 0 141 10 4 60 0 5 252 0 4 346 2 1 50 8 0 18 29 33 42 0 3 161 1 2 80 0 1 172 0 1 59 0 1 275 12 0 66 0 1 195 0 1 340 5 0 351 0 10 249 6 10 38 1 0 8 6 1 5 0 2 27 0 1 46 0 4 91 0 7 98 12 8 129 0 5 8 0 7 12 4 7 135 22 1 215 chain 10932 chr2 243199373 + 142367748 142367889 L1PA3long 6157 + 6009 6142 156481 117 11 3 13 chain 29512 chr2 243199373 + 142388553 142388932 THE1C 375 - 0 375 86596 230 4 0 145 chain 274727 chr2 243199373 + 142418436 142422455 L1PA10 4194 + 175 4116 14938 15 35 31 11 21 18 21 2 0 15 1 0 8 61 32 9 2 0 21 1 0 7 1 0 8 3 0 9 1 0 15 16 9 64 19 16 1086 0 1 262 0 1 195 0 2 178 26 17 227 6 7 150 14 13 33 0 1 6 13 12 183 5 6 179 0 1 4 1 0 34 50 12 42 18 1 92 25 30 189 9 40 337 0 3 111 8 9 113 0 1 12 2 0 8 5 4 30 chain 60931 chr2 243199373 + 142441430 142442176 L1PA7 6471 + 5730 6467 52375 161 12 0 390 1 0 174 0 4 8 chain 12869 chr2 243199373 + 142458140 142458315 MER39B 650 + 47 225 148760 38 6 9 131 chain 16613 chr2 243199373 + 142502200 142502776 L1M1 2793 - 1773 2240 136625 13 0 3 5 4 0 98 1 0 5 10 8 49 1 0 8 2 0 19 11 10 27 24 19 11 39 28 11 18 13 19 6 0 4 0 1 7 130 63 10 3 0 7 5 4 8 1 0 10 3 0 7 chain 54009 chr2 243199373 + 142546103 142546726 L1PA4 6152 - 1 623 56359 151 6 0 261 0 5 205 chain 44113 chr2 243199373 + 142572899 142573485 LTR12F 595 + 0 595 64070 20 0 9 74 0 1 39 3 1 33 16 8 22 1 10 378 chain 20946 chr2 243199373 + 142581968 142582220 AluYc 301 - 52 300 124127 86 5 0 47 4 5 110 chain 20764 chr2 243199373 + 142694677 142694959 AluYc3 301 + 1 277 124737 112 1 2 71 20 13 78 chain 45592 chr2 243199373 + 142709432 142709959 L1PA5 6144 - 19 537 62414 5 1 0 128 7 0 181 1 0 204 chain 3872 chr2 243199373 + 142712684 142712730 MER53 195 - 3 49 209277 46 chain 216941 chr2 243199373 + 142720974 142723322 L1PA2 6032 + 3678 6025 18057 2340 1 0 7 chain 9875 chr2 243199373 + 142747244 142747458 THE1D 372 + 132 352 161200 33 0 60 12 50 13 42 17 0 60 chain 107013 chr2 243199373 + 142772779 142774393 L1PA7 6471 + 5147 6457 34969 96 1 2 281 2 0 94 1 4 20 314 2 52 0 2 105 0 3 507 1 2 140 chain 19783 chr2 243199373 + 142788904 142789112 L1HS 6032 - 0 208 127866 208 chain 2670 chr2 243199373 + 142873448 142873491 L1MC4a 1092 + 374 415 230776 36 2 0 5 chain 10763 chr2 243199373 + 142908492 142908612 L1PA5 6144 - 16 136 157140 120 chain 20094 chr2 243199373 + 142913168 142913387 L1PA3long 6157 + 5938 6157 126849 219 chain 123731 chr2 243199373 + 142917625 142919520 L1PA13 3608 + 1577 3486 29801 39 0 1 4 1 0 107 1 0 6 0 1 209 26 24 17 1 4 130 2 0 118 6 4 20 5 4 69 1 0 72 20 16 31 13 14 96 0 1 260 9 10 203 1 0 24 0 1 24 19 25 12 6 5 32 1 0 109 8 6 57 6 5 54 1 0 5 44 65 5 1 0 20 chain 22137 chr2 243199373 + 142924957 142925205 L1PA4 6152 - 184 433 119637 167 0 1 81 chain 15360 chr2 243199373 + 142925208 142925375 L1PA4 6152 + 5984 6151 140314 167 chain 17376 chr2 243199373 + 142935405 142935761 THE1C 375 + 7 375 134577 20 1 0 20 71 69 19 0 4 25 1 0 13 3 0 9 7 9 30 11 24 126 chain 25154 chr2 243199373 + 142941900 142942262 THE1B 368 - 0 368 103994 200 1 0 75 8 12 29 12 17 22 2 0 13 chain 12398 chr2 243199373 + 142950560 142950703 L1PA5 6144 - 6 149 150645 143 chain 4265 chr2 243199373 + 142997320 142997376 MER2 342 - 264 320 203683 56 chain 27033 chr2 243199373 + 143041733 143042033 L1PA3long 6157 - 0 300 96170 300 chain 28939 chr2 243199373 + 143138321 143138745 MLT2A1 477 - 0 477 89277 19 1 0 30 3 43 60 18 27 121 6 10 24 0 1 54 0 1 4 1 0 83 chain 3102 chr2 243199373 + 143161951 143161984 L1MA5 2750 + 2322 2355 222886 33 chain 52536 chr2 243199373 + 143162670 143163305 L1P3 4156 - 145 789 57273 269 0 12 127 8 6 103 1 0 127 chain 228590 chr2 243199373 + 143187807 143190360 L1PA4 6152 + 3597 6151 17382 150 0 1 887 1 0 1373 0 1 142 chain 14456 chr2 243199373 + 143204070 143204236 MLT2A2 560 - 393 560 143031 112 0 1 54 chain 107299 chr2 243199373 + 143211345 143213046 L1PA8 5853 + 4430 5853 34892 87 59 64 428 3 1 174 271 0 380 1 0 44 2 0 71 1 0 8 0 6 7 11 1 39 2 1 19 1 0 93 chain 3758 chr2 243199373 + 143245547 143245589 LTR1B 797 + 0 42 210981 42 chain 258025 chr2 243199373 + 143249106 143252511 HERVH-int 3825 - 0 3825 15807 71 22 27 347 1 0 5 0 1 36 8 218 387 1 0 184 4 5 449 0 5 137 0 4 82 11 17 420 9 0 201 15 0 158 0 1 275 13 282 23 2 1 14 57 2 93 15 16 14 18 17 333 chain 92553 chr2 243199373 + 143256549 143257570 L1PA3long 6157 - 0 1026 38800 154 0 1 336 1 0 288 1 0 235 0 6 6 chain 110302 chr2 243199373 + 143303447 143304849 LTR12C 1709 + 0 1709 34128 299 1 2 407 1 280 12 0 41 71 1 0 4 10 8 100 11 4 399 11 7 75 chain 12269 chr2 243199373 + 143320889 143321059 MER51C 639 + 472 639 151120 46 1 2 43 4 0 76 chain 11230 chr2 243199373 + 143321748 143321873 L1PA3long 6157 - 3 128 155309 125 chain 3681 chr2 243199373 + 143343944 143343988 Charlie1 1172 - 255 299 212219 44 chain 37372 chr2 243199373 + 143344176 143344685 LTR2B 499 - 0 499 73000 55 1 0 6 3 2 413 8 3 5 3 0 15 chain 38840 chr2 243199373 + 143355243 143355690 L1PA5 6144 + 5694 6144 70963 116 0 1 21 0 1 204 1 2 105 chain 553346 chr2 243199373 + 143365350 143371377 L1PA2 6032 - 2 6028 1028 3468 1 0 2558 chain 20567 chr2 243199373 + 143375614 143375909 L1PA8 5853 + 5564 5853 125406 44 2 0 71 1 0 9 6 5 47 2 1 19 2 1 92 chain 5500 chr2 243199373 + 143398469 143398529 L1PA3long 6157 + 6092 6152 190042 60 chain 203508 chr2 243199373 + 143410396 143469138 L1PA7 6471 - 5 4269 18960 7 3 0 145 0 1 88 0 20 410 0 2 33 2 0 59 20 1 12 4 8 34 10 19 6 1 0 168 1 0 426 0 1 71 0 1 209 0 10 57 0 4 109 55004 551 51 0 1 131 5 7 7 0 1 197 0 2 114 2 0 181 0 9 213 13 18 37 1 0 339 72 0 4 0 1 67 0 2 282 0 1 147 chain 4099 chr2 243199373 + 143430151 143430206 L1MA5A 2387 - 348 400 205973 6 3 0 46 chain 18120 chr2 243199373 + 143432515 143432734 L1PA7 6471 + 6252 6468 132542 61 0 1 147 4 0 7 chain 129993 chr2 243199373 + 143459449 143460879 SVA_D 2077 + 0 2073 28091 4 1 0 6 1 0 6 1 0 671 0 157 73 0 489 667 chain 196334 chr2 243199373 + 143469139 143471576 L1PA7 6471 + 4044 6466 19477 156 2 1 58 11 10 148 6 5 112 1 0 345 4 0 98 21 15 615 8 7 373 1 0 394 0 3 8 9 6 45 0 1 22 chain 3776 chr2 243199373 + 143479667 143479711 MamRep488 187 - 81 125 210728 44 chain 534719 chr2 243199373 + 143485436 143491560 L1PA4 6152 + 1 6136 3627 166 0 1 279 30 41 132 12 4 937 0 2 133 0 1 965 1 0 4 0 1 618 0 1 4 13 14 732 0 1 422 8 0 1091 0 5 262 0 1 189 1 4 125 chain 20084 chr2 243199373 + 143504838 143505143 AluSc5 308 + 20 296 126878 77 0 4 67 0 1 34 1 0 4 25 0 73 8 0 16 chain 31329 chr2 243199373 + 143535582 143536037 MER75 514 - 0 460 81936 16 4 0 139 0 4 101 0 1 116 0 1 12 47 50 20 chain 539777 chr2 243199373 + 143563848 143569860 L1PA3long 6157 - 1 6157 2852 153 0 1 641 0 5 122 0 1 4 1 0 1966 0 1 933 0 4 640 0 2 779 4 132 450 5 6 99 0 1 63 0 1 152 chain 108523 chr2 243199373 + 143587238 143588662 L1PA10 4194 - 44 1469 34555 29 13 9 25 1 2 36 0 1 60 0 1 34 0 1 347 2 1 107 0 11 349 8 1 400 2 0 11 chain 6080 chr2 243199373 + 143607421 143607744 MER34A 573 + 3 384 184577 56 160 175 26 38 48 13 10 43 20 chain 23197 chr2 243199373 + 143613892 143614184 AluY 311 + 10 303 114687 121 1 2 170 chain 71615 chr2 243199373 + 143618861 143619669 L1PA4 6152 - 9 816 47646 4 1 0 803 chain 13244 chr2 243199373 + 143627813 143627954 AluYa8 305 + 164 305 147310 141 chain 60715 chr2 243199373 + 143639903 143640619 L1PA6 6164 - 2 718 52464 716 chain 53503 chr2 243199373 + 143656271 143657060 LTR17 781 - 24 781 56678 16 0 1 21 2 24 49 0 1 270 16 0 3 37 0 45 1 0 116 5 6 13 17 16 20 1 0 97 1 0 59 chain 11198 chr2 243199373 + 143657368 143657493 HERV17-int 4347 - 0 125 155430 125 chain 63493 chr2 243199373 + 143657493 143658253 LTR17 781 - 0 781 51249 31 0 22 401 1 0 327 chain 314694 chr2 243199373 + 143658670 143662527 HERV17-int 4347 - 0 4335 12818 262 3 5 452 0 1 81 0 1 53 0 2 349 0 2 65 2 1 154 6 7 200 26 25 760 0 4 38 0 1 256 2 1 116 2 1 37 1 2 204 0 1 121 0 1 35 0 1 343 0 430 50 0 25 31 0 1 24 0 13 51 2 1 26 2 0 34 1 0 52 1 0 15 chain 18522 chr2 243199373 + 143672380 143672639 LTR9B 643 - 377 643 131441 49 14 19 13 0 1 47 4 5 132 chain 25064 chr2 243199373 + 143683551 143683857 L1PA7 6471 + 6161 6469 104487 21 0 1 122 0 8 5 7 0 151 chain 32596 chr2 243199373 + 143688403 143688805 MER48 407 - 0 402 79856 372 1 0 4 0 1 25 chain 174796 chr2 243199373 + 143690803 143694109 HERVH48-int 3304 - 59 3185 21493 26 93 68 68 64 48 16 2 0 48 8 5 43 1 0 5 2 0 23 1 0 9 18 10 21 11 5 7 3 0 28 147 109 7 2 0 17 2 0 25 3 0 5 4 1 13 4 2 44 1 0 18 1 0 4 1 0 135 0 1 93 1 0 47 1 0 12 1 0 70 2 0 18 1 0 54 0 15 31 0 2 144 1 0 8 0 1 172 1 2 4 1 0 102 1 0 73 3 16 15 5 7 5 1 0 188 14 12 11 2 1 18 0 1 102 11 5 5 1 0 5 2 0 10 7 6 25 2 0 20 2 1 16 8 5 21 2 0 3 3 0 47 1 0 20 1 0 10 4 1 117 0 18 68 1 0 32 1 0 5 1 2 26 9 7 67 3 1 4 1 0 10 6 5 19 10 16 25 22 16 13 12 9 79 14 8 8 6 0 15 2 1 40 2 1 29 1 0 5 6 2 60 66 45 31 4 1 29 2 0 5 50 38 10 2 0 7 6 2 8 2 0 7 chain 118362 chr2 243199373 + 143706327 143707869 THE1B-int 1605 - 0 1577 31663 330 0 3 20 11 12 22 2 0 338 0 7 365 6 7 37 16 41 395 chain 23984 chr2 243199373 + 143707897 143708247 THE1B 368 - 0 366 110423 73 7 4 118 2 1 75 11 16 14 8 23 42 chain 44012 chr2 243199373 + 143737411 143738076 MER41B 635 - 25 635 64192 162 5 0 8 0 1 39 6 7 4 1 0 128 56 0 78 0 3 7 6 7 37 0 1 128 chain 558631 chr2 243199373 + 143763611 143769645 L1PA2 6032 + 0 6032 439 789 1 0 2274 1 0 2969 chain 48897 chr2 243199373 + 143793721 143794308 LTR10C 591 - 0 591 59809 81 0 2 109 0 1 179 0 1 218 chain 52413 chr2 243199373 + 143797097 143797725 PABL_A 660 - 0 660 57342 161 0 31 347 0 1 120 chain 148349 chr2 243199373 + 143801418 143803205 L1PA7 6471 - 13 1804 24834 492 0 2 145 0 1 195 1 4 270 8 5 242 4 5 430 chain 14641 chr2 243199373 + 143806330 143806493 L1PA8A 6298 + 5593 5756 142454 163 chain 27381 chr2 243199373 + 143807773 143808111 L1PA8A 6298 - 8 350 95024 160 2 9 116 6 3 54 chain 19875 chr2 243199373 + 143811044 143811374 THE1B 368 + 0 357 127574 44 14 29 96 1 0 26 1 0 6 34 48 108 chain 21199 chr2 243199373 + 143832158 143832513 THE1B 368 + 0 356 123217 66 2 4 102 1 0 20 41 51 41 12 2 70 chain 28060 chr2 243199373 + 143832540 143832886 THE1B-int 1605 + 15 362 92790 323 0 1 23 chain 83867 chr2 243199373 + 143846450 143847568 LTR12C 1709 - 7 1709 41961 77 7 6 77 0 102 212 11 4 107 0 47 141 0 280 131 16 16 39 41 204 259 chain 89269 chr2 243199373 + 143876915 143878326 L1PB1 5432 - 10 1293 39898 18 1 0 13 1 0 21 1 0 24 2 0 9 6 5 5 2 0 19 29 16 11 1 0 45 1 0 14 3 2 53 2 0 8 17 12 24 0 3 6 3 0 11 126 0 365 0 25 84 0 1 118 22 25 163 1 0 153 0 1 29 chain 5537 chr2 243199373 + 143976461 143976531 Tigger3b 1229 - 1088 1158 189700 70 chain 20084 chr2 243199373 + 143976658 143976943 Tigger3a 397 + 1 337 126879 73 15 65 135 1 0 5 0 2 56 chain 11589 chr2 243199373 + 143982425 143982561 L1PA7 6471 + 6123 6258 153932 14 1 0 121 chain 10455 chr2 243199373 + 143995520 143995646 L1PA11 4918 - 856 987 158105 110 0 1 4 0 4 12 chain 34982 chr2 243199373 + 143995646 143996109 L1PA11 4918 + 4053 4508 76208 275 4 0 65 2 1 81 2 0 14 1 0 19 chain 23298 chr2 243199373 + 144039867 144040231 THE1B 368 - 0 368 114215 49 14 13 110 2 0 10 1 0 5 0 1 11 1 0 24 6 15 43 17 16 71 chain 106257 chr2 243199373 + 144060967 144062180 L1PA5 6144 + 4914 6139 35193 137 0 1 90 0 5 146 0 8 830 2 0 8 chain 60622 chr2 243199373 + 144062293 144063046 L1PA7 6471 + 5705 6466 52511 7 0 3 340 1 0 12 0 1 44 1 0 113 11 15 207 5 7 12 chain 163293 chr2 243199373 + 144084278 144086309 L1PA7 6471 + 4252 6466 22908 59 0 3 105 1 0 33 1 0 214 0 8 62 3 0 56 1 15 329 0 138 32 0 1 23 2 3 136 0 5 150 6 9 75 0 3 82 0 3 191 0 3 148 0 3 76 1 0 20 0 4 225 chain 16929 chr2 243199373 + 144127885 144128076 L1PA3long 6157 + 5965 6156 135774 191 chain 9272 chr2 243199373 + 144128734 144128862 L1PA8 5853 - 0 126 164206 92 2 1 19 2 1 13 chain 22751 chr2 243199373 + 144173249 144173682 L1PB1 5432 + 5021 5420 116823 82 1 2 9 3 0 24 2 1 8 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 44 1 0 16 3 0 6 21 11 14 8 5 13 3 1 24 1 0 21 1 0 13 1 0 16 chain 47310 chr2 243199373 + 144204216 144204748 L1PA3long 6157 - 17 554 60960 316 0 1 188 0 4 28 chain 13788 chr2 243199373 + 144242673 144242864 L1PA8 5853 - 16 204 145308 77 1 0 16 1 0 49 0 1 5 5 4 6 1 0 30 chain 547125 chr2 243199373 + 144293955 144300093 L1PA4 6152 - 9 6151 1816 6 0 3 727 4 0 1890 0 1 1272 0 2 135 0 3 74 1 0 2029 chain 5917 chr2 243199373 + 144321486 144321569 MLT1F2 592 - 64 160 186033 61 0 15 11 2 0 9 chain 106889 chr2 243199373 + 144325512 144326746 L1PA6 6164 + 4927 6162 35005 389 0 7 188 0 1 644 7 0 6 chain 3706 chr2 243199373 + 144337450 144337506 L1PA2 6032 - 0 58 211854 16 2 4 38 chain 22659 chr2 243199373 + 144345961 144346264 L1PA8A 6298 - 12 319 117283 16 0 1 76 7 0 6 1 9 51 0 2 146 chain 35520 chr2 243199373 + 144383956 144384414 LTR12F 595 - 12 595 75526 340 0 131 7 7 2 23 2 1 79 chain 26700 chr2 243199373 + 144385571 144385978 L1PA16 3655 - 77 479 97325 185 1 4 98 9 7 24 15 15 36 12 6 27 chain 84258 chr2 243199373 + 144395314 144396233 L1PA2 6032 + 5113 6032 41796 919 chain 552567 chr2 243199373 + 144419131 144425156 L1PA2 6032 + 2 6032 1123 239 0 4 335 0 4 342 0 1 1387 0 4 257 5 0 594 0 1 2849 2 0 8 2 0 5 chain 127389 chr2 243199373 + 144471030 144472601 THE1A-int 1579 - 0 1579 28723 11 1 2 258 2 1 270 2 0 155 0 3 67 0 3 328 0 1 68 0 1 80 9 8 82 0 3 238 chain 25939 chr2 243199373 + 144472613 144472957 THE1A 353 - 12 353 100253 39 3 1 191 2 1 109 chain 6205 chr2 243199373 + 144494564 144494646 Tigger13a 716 - 441 521 183553 38 2 0 42 chain 11887 chr2 243199373 + 144504638 144504817 L1PA8 5853 + 5679 5847 152663 9 1 0 52 2 1 19 1 0 58 17 9 20 chain 25259 chr2 243199373 + 144556642 144556940 AluY 311 + 3 300 103421 129 0 1 151 2 0 16 chain 3585 chr2 243199373 + 144603950 144603994 Ricksha_c 1012 + 553 596 213906 32 1 0 11 chain 566342 chr2 243199373 + 144618525 144624556 L1HS 6032 + 0 6032 128 3159 0 1 2872 chain 4472 chr2 243199373 + 144654849 144654898 HY3 101 + 22 71 201091 49 chain 36460 chr2 243199373 + 144666525 144667183 MER50 708 + 59 664 74286 14 10 21 56 21 22 117 3 0 31 61 0 38 9 8 73 5 7 59 1 0 59 7 6 66 8 11 12 3 0 5 chain 7524 chr2 243199373 + 144669917 144670035 MER2 342 + 158 294 174014 45 0 22 35 7 3 31 chain 89269 chr2 243199373 + 144678866 144679877 SVA_D 2077 - 3 1130 39899 10 12 0 299 1 0 337 0 49 44 0 78 219 0 2 50 1 0 34 0 1 4 chain 41754 chr2 243199373 + 144679930 144680402 SVA_F 1814 - 977 1457 66953 396 0 8 76 chain 28089 chr2 243199373 + 144731075 144731375 AluYg6 310 + 0 300 92687 300 chain 15634 chr2 243199373 + 144748951 144749121 SVA_F 1814 + 1122 1291 139482 152 1 0 17 chain 80232 chr2 243199373 + 144749159 144750095 SVA_D 2077 + 730 2056 43493 66 1 163 33 0 1 43 0 2 37 0 127 17 0 1 92 0 98 355 1 0 291 chain 24467 chr2 243199373 + 144774578 144774858 AluSc 308 - 17 297 107718 280 chain 7594 chr2 243199373 + 144808375 144808497 MER2 342 - 177 305 173585 49 0 1 28 16 21 29 chain 535984 chr2 243199373 + 144861695 144868102 L1PA5 6144 + 0 6128 3447 1026 0 2 196 0 1 591 1 0 1434 0 2 178 0 1 799 307 0 424 0 18 346 1 0 247 5 10 19 0 1 833 chain 14750 chr2 243199373 + 144934401 144934764 MSTA 426 - 18 425 142102 91 1 21 29 136 159 82 10 11 14 chain 113977 chr2 243199373 + 144961432 144962717 L1PA4 6152 + 4859 6152 33099 445 0 4 826 1 0 7 0 5 6 chain 30049 chr2 243199373 + 145003858 145004174 AluYb8 318 + 0 316 84649 316 chain 23253 chr2 243199373 + 145014080 145014444 L1PA8 5853 + 5507 5853 114430 57 1 0 42 4 2 70 38 26 10 1 0 26 2 1 19 1 0 93 chain 3197 chr2 243199373 + 145017066 145017102 MADE1 96 - 60 96 220991 36 chain 48487 chr2 243199373 + 145027743 145028388 L1PA8 5853 + 5215 5853 60122 305 0 1 43 7 6 38 2 0 67 5 4 21 1 0 39 3 2 19 1 0 9 8 7 77 chain 3758 chr2 243199373 + 145034769 145034839 MER33 330 + 242 319 210983 7 1 0 34 13 21 15 chain 20181 chr2 243199373 + 145038477 145038703 L1PA4 6152 - 1 228 126590 148 1 2 77 chain 8705 chr2 243199373 + 145087758 145087948 Tigger3a 397 + 54 324 167172 21 45 127 46 11 9 67 chain 49114 chr2 243199373 + 145103642 145104442 MER4A 717 - 33 717 59659 32 0 7 149 1 0 6 19 12 21 5 0 123 1 0 59 0 2 80 120 10 156 1 0 27 chain 3988 chr2 243199373 + 145125137 145125336 MLT1L 557 - 1 218 207563 30 1 0 19 131 150 18 chain 25690 chr2 243199373 + 145301049 145301348 AluSp 311 - 12 311 101331 299 chain 14014 chr2 243199373 + 145314800 145315139 L1PB1 5432 - 10 318 144533 18 1 0 12 1 0 22 1 0 24 59 44 6 2 0 15 5 4 40 7 6 10 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 8 7 13 chain 10026 chr2 243199373 + 145324792 145324908 L1PA4 6152 - 9 129 160442 46 0 4 70 chain 14165 chr2 243199373 + 145375683 145375887 L1PB2 3958 - 120 320 143998 52 13 12 21 2 0 72 1 0 43 chain 9164 chr2 243199373 + 145380733 145380884 L1PA13 3608 - 120 265 164741 20 1 0 6 1 2 12 8 4 48 3 1 52 chain 474410 chr2 243199373 + 145390811 145396706 L1PA7 6471 - 5 6471 7899 842 0 3 147 0 5 116 1 2 199 3 574 568 0 3 54 1 2 417 0 2 255 6 7 190 1 2 47 0 1 362 1 0 36 15 6 361 1 0 138 16 0 15 0 12 71 1 0 293 3 4 326 0 1 69 7 8 424 2 6 10 4 0 18 1 2 57 0 1 205 4 5 99 0 1 88 12 0 214 0 1 94 5 6 25 0 1 71 chain 194386 chr2 243199373 + 145477063 145479238 L1PA3long 6157 - 0 2182 19639 140 7 0 7 1 8 184 1 0 504 0 4 18 0 4 1313 chain 152182 chr2 243199373 + 145479238 145480915 L1PA3long 6157 + 2287 3964 24316 1677 chain 55071 chr2 243199373 + 145501697 145502536 L1MA3 4352 - 24 850 55662 14 35 33 23 13 11 68 1 0 65 37 20 43 8 7 193 4 8 96 1 7 238 chain 76807 chr2 243199373 + 145504751 145505760 MER11B 1079 + 0 1042 45081 316 1 18 202 11 11 16 24 32 144 6 7 21 6 8 91 1 5 21 1 0 95 0 2 53 chain 54776 chr2 243199373 + 145515610 145516473 L1PA15 4387 - 39 871 55858 15 13 9 9 3 1 44 6 3 50 24 14 18 1 0 53 13 12 15 2 1 108 1 0 63 1 0 41 3 1 19 0 2 36 9 4 10 10 8 103 2 1 115 0 1 76 chain 55036 chr2 243199373 + 145518363 145519213 L1PB 1623 + 748 1572 55686 9 0 1 319 5 9 237 13 23 100 1 0 7 2 1 30 111 72 16 chain 17486 chr2 243199373 + 145519640 145519853 L1P1 4361 + 4 742 134296 86 0 525 127 chain 330611 chr2 243199373 + 145542551 145546650 L1P3 4156 + 6 4139 12178 230 67 65 18 2 1 610 3 4 303 0 4 48 2 3 102 0 3 130 0 1 629 0 5 471 3 0 108 0 3 142 0 4 59 0 9 321 0 10 194 1 0 10 0 1 25 1 2 392 0 1 193 2 0 7 2 1 24 chain 33892 chr2 243199373 + 145575590 145576021 L1PA8 5853 + 5429 5853 77788 135 1 0 44 2 0 70 2 1 11 1 0 50 2 1 19 1 0 93 chain 541974 chr2 243199373 + 145655165 145661170 L1PA2 6032 - 0 6023 2509 341 0 1 562 0 4 453 1 0 960 1 0 487 4 0 353 0 2 286 10 14 547 0 6 294 0 1 684 0 3 460 0 1 252 0 2 63 2 1 182 0 1 63 chain 9534 chr2 243199373 + 145666669 145666855 L1MA7 2200 - 223 408 162912 26 39 37 27 0 4 52 2 1 33 2 0 5 chain 4394 chr2 243199373 + 145682443 145682780 MLT1F2 592 + 132 535 202024 37 262 328 38 chain 123392 chr2 243199373 + 145726426 145728001 THE1B-int 1605 - 5 1605 29918 4 0 1 37 1 0 225 1 0 156 9 10 620 3 4 86 0 25 256 1 0 176 chain 3999 chr2 243199373 + 145729370 145729461 UCON13 136 - 15 103 207402 21 6 4 22 15 14 27 chain 8823 chr2 243199373 + 145760586 145760754 MER47B 469 + 292 469 166542 74 27 34 21 13 15 33 chain 45379 chr2 243199373 + 145782140 145782689 L1PA8A 6298 - 7 565 62617 110 0 9 439 chain 22852 chr2 243199373 + 145803244 145803505 L1PA4 6152 + 5892 6152 116326 252 1 0 8 chain 19820 chr2 243199373 + 145839879 145840168 AluSg7 307 + 8 297 127752 45 13 11 67 18 19 91 0 1 55 chain 54920 chr2 243199373 + 145850984 145851673 HERVL-int 5654 - 4962 5654 55755 40 1 0 14 0 1 291 0 3 85 0 1 225 3 2 30 chain 10215 chr2 243199373 + 145851790 145851908 MLT2A2 560 - 442 560 159543 118 chain 5144 chr2 243199373 + 145855127 145855232 MER20 218 + 30 137 193611 5 2 0 42 29 33 27 chain 29291 chr2 243199373 + 145875924 145876292 THE1C 375 - 0 367 87618 26 1 0 341 chain 13833 chr2 243199373 + 145881723 145881886 MLT2A2 560 + 0 163 145121 163 chain 92085 chr2 243199373 + 145908874 145910124 HSMAR1 1287 + 27 1287 38944 98 7 0 37 1 12 383 5 2 242 11 12 97 21 24 51 11 13 232 0 3 54 chain 23029 chr2 243199373 + 145964097 145964473 THE1C 375 - 0 375 115495 25 1 0 118 45 39 11 0 3 57 17 18 18 0 1 65 0 1 19 chain 396883 chr2 243199373 + 145966903 145971825 L1PA7 6471 - 5 6455 10206 654 0 3 173 13 9 333 1 0 315 11 29 572 1 0 74 0 6 294 10 0 55 0 1496 402 0 2 488 0 1 65 4 0 229 0 4 45 0 4 237 0 1 107 1 2 230 0 1 14 0 1 5 2 1 159 21 31 51 0 1 356 chain 10909 chr2 243199373 + 146146091 146146213 L1PA2 6032 + 5910 6032 156556 122 chain 9714 chr2 243199373 + 146192991 146193104 MER85 139 - 16 139 162011 24 0 10 89 chain 19429 chr2 243199373 + 146197170 146197397 L1PA4 6152 - 2939 3165 128873 48 2 1 177 chain 257671 chr2 243199373 + 146197398 146200320 L1PA4 6152 + 3214 6140 15832 574 0 1 2061 0 4 141 1 0 145 chain 203765 chr2 243199373 + 146262247 146264539 L1PA4 6152 + 3881 6151 18941 513 0 1 704 28 5 1047 chain 159610 chr2 243199373 + 146276708 146278919 L1PA6 6164 - 4 1882 23383 6 2 0 738 0 3 98 0 1 413 335 0 619 chain 123590 chr2 243199373 + 146278919 146280357 L1PA6 6164 + 2827 4265 29787 473 1 0 520 0 1 444 chain 26053 chr2 243199373 + 146283297 146283603 AluSp 311 + 5 311 99814 306 chain 21660 chr2 243199373 + 146297545 146297794 L1PA5 6144 - 1 250 121541 249 chain 101963 chr2 243199373 + 146361610 146362865 L1P1 4361 - 34 1282 36274 22 1 0 155 1 0 216 1 0 4 0 1 234 12 14 7 7 0 595 chain 4199 chr2 243199373 + 146374386 146374432 MADE1 96 - 50 96 204551 46 chain 23140 chr2 243199373 + 146420518 146420813 AluSc5 308 - 13 308 114938 144 15 15 136 chain 13403 chr2 243199373 + 146438665 146438866 AluSp 311 + 5 196 146697 111 36 26 54 chain 32881 chr2 243199373 + 146446737 146447154 L1PA7 6471 - 6 430 79394 6 3 0 106 0 1 152 0 9 150 chain 40262 chr2 243199373 + 146455111 146455593 L1PA6 6164 + 5676 6162 68926 95 0 4 387 chain 500587 chr2 243199373 + 146539967 146546052 L1PA6 6164 + 0 6160 6803 371 25 32 97 11 10 279 0 17 79 0 1 32 0 1 768 0 4 98 11 12 781 7 11 596 0 1 752 0 2 313 0 1 87 1 3 5 2 0 703 0 21 32 0 6 199 1 5 79 1 0 23 0 7 732 chain 36365 chr2 243199373 + 146592352 146593370 L1MA5A 2387 - 12 670 74412 16 2 0 19 1 0 10 2 1 10 41 24 63 45 45 6 0 2 24 2 0 48 1 0 26 390 49 188 0 1 19 0 3 51 1 0 53 chain 116012 chr2 243199373 + 146637650 146639043 LTR12C 1709 - 0 1709 32451 481 0 4 83 1 0 10 17 337 281 8 12 125 1 0 76 8 0 86 2 0 214 chain 3680 chr2 243199373 + 146659212 146659259 THE1B-int 1605 + 100 150 212246 13 0 3 34 chain 25653 chr2 243199373 + 146674569 146674948 L1PA8 5853 - 30 405 101479 63 1 0 19 2 1 24 0 4 8 15 10 15 1 0 70 9 7 42 1 0 90 0 3 19 chain 4091 chr2 243199373 + 146676092 146676225 MER5A1 166 - 1 129 206072 17 44 43 15 16 12 41 chain 502405 chr2 243199373 + 146703765 146709902 L1PA6 6164 - 8 6163 6703 329 0 1 262 0 1 1047 0 4 146 0 4 666 2 0 506 0 1 4 1 2 849 0 2 117 1 3 387 0 2 377 1 0 128 0 1 226 3 0 8 0 3 570 11 10 87 0 1 197 0 1 17 27 28 168 chain 47442 chr2 243199373 + 146750517 146751086 L1PA5 6144 + 5551 6134 60874 143 4 11 108 0 1 209 0 1 84 0 5 21 chain 47147 chr2 243199373 + 146806907 146807727 L1MA2 4263 - 158 944 61090 36 23 15 19 0 1 59 26 25 24 0 1 5 5 4 57 0 16 37 16 13 131 1 0 5 58 26 26 1 0 16 1 0 4 4 1 18 1 0 247 chain 11707 chr2 243199373 + 146829721 146829859 AluYc 301 + 159 299 153432 105 0 2 33 chain 97906 chr2 243199373 + 146831738 146832936 L1PA6 6164 - 4 1209 37260 141 27 29 5 2 0 158 0 1 218 0 1 314 0 5 333 chain 155610 chr2 243199373 + 146832936 146834830 L1P2 5180 + 2096 3982 23907 143 0 1 610 12 1 71 1 3 264 1 0 34 7 11 59 1 2 288 4 0 399 chain 111931 chr2 243199373 + 146841603 146842955 L1PA7 6471 + 5079 6456 33684 9 0 22 355 0 1 15 0 1 140 2 0 76 0 2 438 0 1 317 chain 12950 chr2 243199373 + 146886733 146886924 L1PA16 3655 - 914 1105 148431 39 0 1 18 15 14 119 chain 4678 chr2 243199373 + 146891094 146891203 MER101B 537 + 258 375 198782 13 37 45 59 chain 5361 chr2 243199373 + 146902723 146902785 U7 62 + 0 62 191418 62 chain 152259 chr2 243199373 + 146908029 146910419 L1PA4 6152 - 0 1725 24306 148 0 1 292 667 0 660 0 1 623 chain 11354 chr2 243199373 + 146908712 146908848 L1PA4 6152 - 16 152 154884 136 chain 79824 chr2 243199373 + 146910419 146911325 L1PA4 6152 + 3516 4422 43672 906 chain 22020 chr2 243199373 + 146940962 146941216 L1PA2 6032 - 4 252 120138 7 2 0 89 4 0 152 chain 19026 chr2 243199373 + 146955439 146955800 THE1B 368 + 0 368 130047 19 3 0 25 18 33 92 1 0 23 63 61 44 2 0 71 chain 6026 chr2 243199373 + 146956844 146956915 THE1B 368 + 295 368 185013 43 0 2 28 chain 34093 chr2 243199373 + 146968916 146969334 L1PA6 6164 + 5715 6133 77483 418 chain 37275 chr2 243199373 + 147029676 147030232 L1PB 1623 + 942 1500 73125 28 0 11 77 20 21 228 4 0 139 1 0 7 8 7 24 1 0 4 3 0 12 chain 378514 chr2 243199373 + 147056731 147061980 L1PB1 5432 + 84 5419 10801 132 7 8 320 1 0 57 4 1 160 0 1 69 9 6 238 0 1 315 13 5 529 0 4 114 3 7 437 0 7 115 2 3 174 4 20 136 0 1 147 3 4 383 7 7 163 1 0 80 2 4 10 21 1 219 1 0 5 0 1 236 1 0 328 1 49 40 3 0 425 0 1 5 2 1 50 110 169 8 1 0 16 4 1 14 8 0 16 8 5 14 2 0 27 2 1 17 1 0 13 1 0 15 chain 137564 chr2 243199373 + 147065620 147067181 L1PA4 6152 + 4583 6152 26549 467 0 1 338 0 1 619 1 0 72 0 8 5 1 0 58 chain 112642 chr2 243199373 + 147090290 147091570 L1PA5 6144 - 12 1302 33488 831 0 4 138 0 6 311 chain 22182 chr2 243199373 + 147091570 147091820 L1PA5 6144 + 4491 4746 117860 140 0 5 110 chain 6646 chr2 243199373 + 147092842 147092922 L1PA16 3655 - 118 198 180127 80 chain 13417 chr2 243199373 + 147112669 147112811 L1PA2 6032 - 2 144 146640 142 chain 6260 chr2 243199373 + 147141189 147141345 MER53 195 + 10 195 183087 57 54 82 17 1 2 27 chain 28089 chr2 243199373 + 147145971 147146270 AluYb8 318 - 18 317 92686 299 chain 19641 chr2 243199373 + 147157066 147157347 AluSp 311 + 11 290 128277 195 35 33 51 chain 129633 chr2 243199373 + 147160281 147161811 LTR12C 1709 - 0 1696 28169 233 2 5 243 0 4 6 0 1 100 3 1 5 1 0 194 0 161 743 chain 508966 chr2 243199373 + 147163309 147168909 L1PA2 6032 + 3 6032 6245 253 1 0 4411 29 456 106 0 3 800 chain 15349 chr2 243199373 + 147179852 147180047 L1PA11 4918 + 4151 4349 140342 162 0 4 10 1 0 22 chain 8359 chr2 243199373 + 147206514 147206613 L1PA4 6152 + 6054 6152 169077 93 1 0 5 chain 51636 chr2 243199373 + 147257304 147257943 PABL_A 660 + 0 649 57873 84 7 16 31 5 6 512 chain 16161 chr2 243199373 + 147275307 147275670 L1PB1 5432 - 56 393 137868 6 1 0 24 2 0 14 1 0 5 3 1 11 19 10 5 2 0 4 1 0 15 1 0 45 1 0 15 2 1 4 0 4 44 2 0 9 12 8 5 1 0 6 1 0 21 22 21 59 chain 25476 chr2 243199373 + 147297460 147297860 LTR7 482 + 0 482 102328 54 23 61 109 8 40 50 0 10 41 1 2 52 17 18 45 chain 28788 chr2 243199373 + 147300460 147301359 MLT2A1 477 - 99 477 89954 205 1 5 27 0 1 44 526 0 96 chain 453003 chr2 243199373 + 147301359 147306927 HERVL-int 5654 - 0 5654 8651 224 0 12 165 0 7 343 1 4 83 1 0 43 13 0 11 0 6 94 6 8 564 0 1 57 0 7 370 4 0 34 4 6 464 3 37 51 0 2 867 0 5 259 0 3 217 0 5 559 0 1 455 3 0 6 0 3 200 0 6 193 1 9 166 1 0 4 1 2 101 chain 3793 chr2 243199373 + 147306927 147306967 MLT2A1 477 - 0 40 210492 40 chain 5932 chr2 243199373 + 147317310 147317435 L1PB1 5432 - 5 120 185857 4 1 0 5 1 0 17 1 0 10 1 0 21 1 0 24 17 14 5 2 0 15 chain 11580 chr2 243199373 + 147357593 147357766 MER30 238 + 49 238 153980 54 11 0 10 1 25 58 0 3 39 chain 153654 chr2 243199373 + 147363494 147365410 L1PA8 5853 - 0 1915 24134 93 2 0 19 2 1 34 14 13 14 2 1 70 2 0 44 1 0 319 0 1 235 0 2 136 0 3 122 4 6 406 1 0 278 0 1 45 1 0 72 chain 264411 chr2 243199373 + 147373864 147377109 L1PA7 6471 + 3210 6469 15463 290 0 5 22 1 2 479 0 1 516 7 8 68 5 7 203 2 6 514 1 2 286 1 0 68 5 6 765 1 0 11 chain 511509 chr2 243199373 + 147399397 147405569 L1PA6 6164 + 0 6161 6026 250 1 0 268 2 1 908 10 24 26 16 17 183 7 8 123 10 11 400 4 0 114 0 1 67 0 1 774 13 0 11 6 4 503 1 0 3 1 0 1195 1 0 148 8 0 314 0 2 234 0 3 560 3 0 8 chain 84127 chr2 243199373 + 147412840 147413893 MER11C 1089 - 26 1089 41845 325 0 1 38 1 0 5 0 4 175 0 1 79 5 0 49 1 0 68 0 3 60 4 13 134 2 1 107 chain 261124 chr2 243199373 + 147459720 147463918 L1MA1 4479 + 228 4129 15638 51 3 1 389 1 4 24 0 4 50 25 39 121 1 0 89 0 1 115 21 14 59 1 2 47 19 9 59 1 4 428 0 6 73 1 0 118 19 23 11 4 0 9 1 9 65 15 14 17 0 1 68 6 13 9 0 6 11 0 3 136 0 1 80 315 0 21 2 3 34 0 1 6 12 14 112 1 0 65 2 1 103 2 0 33 1 0 45 0 1 15 1 0 82 1 2 9 1 0 27 2 0 158 1 0 5 11 9 18 5 0 76 1 0 14 3 0 116 11 8 128 9 6 31 19 15 49 10 11 86 1 0 18 32 41 52 1 0 13 4 1 19 1 0 86 14 10 34 5 15 74 1 0 29 2 0 22 chain 24931 chr2 243199373 + 147483709 147484003 AluY 311 + 16 311 105154 116 0 1 178 chain 36952 chr2 243199373 + 147532229 147532768 MLT2A2 560 + 0 549 73581 28 0 5 208 2 1 89 5 13 13 0 1 23 8 0 7 6 25 27 17 3 106 chain 43227 chr2 243199373 + 147538380 147538930 MLT2A2 560 + 0 560 65137 399 3 14 60 1 0 87 chain 532793 chr2 243199373 + 147545971 147552100 L1PA4 6152 + 3 6152 3876 537 1 0 1574 21 1 132 0 1 370 1 0 26 0 26 608 12 8 404 0 1 1457 0 4 152 0 4 415 0 4 274 1 2 138 0 5 6 chain 473519 chr2 243199373 + 147565255 147572308 L1PA8A 6298 + 40 6291 7929 18 2 1 7 3 0 7 13 6 21 3 0 19 15 18 10 2 1 9 2 1 13 1 0 6 1 0 12 2 0 15 2 0 4 1 0 13 1 0 8 2 1 5 1 0 8 1 0 8 1 22 7 2 0 27 3 2 14 3 0 7 2 0 5 6 0 73 2 0 14 2 0 11 4 2 103 12 14 41 13 0 8 25 0 102 8 9 213 1 0 109 0 1 64 0 4 9 32 25 189 1 2 75 5 0 155 0 1 176 1 0 28 0 13 203 0 1 49 0 5 52 0 3 406 19 6 233 1 7 17 9 13 576 4 8 11 5 0 82 1 5 35 1 0 4 0 1 11 11 9 352 6 8 424 1 0 306 0 1 709 301 0 64 20 23 88 0 3 48 470 0 32 0 1 217 0 1 53 0 1 319 1 3 23 1 2 100 chain 37179 chr2 243199373 + 147571096 147571562 LTR2 463 + 0 463 73262 200 4 0 150 24 25 88 chain 8920 chr2 243199373 + 147590785 147590883 L1PA4 6152 + 5908 6006 166027 98 chain 13154 chr2 243199373 + 147590884 147591027 L1PA4 6152 + 6008 6151 147631 143 chain 15823 chr2 243199373 + 147603569 147603758 L1PA7 6471 + 6279 6468 138879 189 chain 107438 chr2 243199373 + 147621923 147623550 L1PB1 5432 + 3906 5400 34853 198 10 6 383 0 5 35 5 0 95 0 2 92 0 1 81 1 0 11 3 0 222 16 16 50 101 5 6 1 0 20 1 0 13 17 12 10 2 0 51 2 1 16 6 0 44 1 0 15 1 0 4 18 9 19 11 9 9 2 0 24 1 0 30 chain 2872 chr2 243199373 + 147632972 147633049 MIRb 242 - 61 141 227506 16 3 0 9 20 27 4 1 0 24 chain 59573 chr2 243199373 + 147638393 147639288 LTR12 884 - 0 884 53066 84 1 0 38 1 0 34 0 103 225 0 22 40 0 1 123 134 0 189 1 0 25 chain 1361 chr2 243199373 + 147638970 147639004 LTR12 884 - 568 602 186727 34 chain 2942 chr2 243199373 + 147639037 147639073 LTR12 884 - 568 604 141207 36 chain 20941 chr2 243199373 + 147654503 147654784 L1PA10 4194 + 3884 4161 124148 232 3 0 34 1 0 11 chain 45262 chr2 243199373 + 147667501 147668032 L1PA7 6471 - 10 542 62755 94 1 2 436 chain 5661 chr2 243199373 + 147706516 147706639 MER58C 217 + 68 214 188474 39 43 66 41 chain 106132 chr2 243199373 + 147728174 147729513 L1PA8A 6298 - 7 1357 35226 32 2 12 59 16 16 212 3 1 587 12 11 149 0 2 224 0 2 43 chain 26700 chr2 243199373 + 147737582 147737948 THE1C 375 + 0 363 97324 87 0 1 91 0 3 19 18 12 137 1 0 13 chain 27545 chr2 243199373 + 147756108 147756445 LTR17 781 + 414 772 94520 284 1 23 27 1 0 24 chain 45378 chr2 243199373 + 147758151 147758691 HERV17-int 4347 + 12 547 62621 15 1 0 52 1 0 34 2 0 26 1 0 158 0 1 158 1 0 91 chain 4223 chr2 243199373 + 147772299 147772350 MER34A1 583 - 216 267 204262 51 chain 6275 chr2 243199373 + 147780195 147780269 THE1C-int 1605 - 19 93 182975 74 chain 78393 chr2 243199373 + 147780269 147781334 MER11A 1151 - 0 1151 44327 26 0 1 69 0 2 32 0 13 36 0 1 57 0 1 54 41 24 67 0 1 73 6 0 12 6 9 116 2 3 5 1 0 254 5 1 117 8 0 23 0 99 55 chain 80781 chr2 243199373 + 147870459 147871356 L1PA3long 6157 + 5258 6157 43280 397 1 2 444 0 1 55 chain 9848 chr2 243199373 + 147889863 147889979 L1PA4 6152 + 6039 6152 161350 107 3 0 6 chain 102010 chr2 243199373 + 147904241 147905465 L1PA7 6471 - 1 1237 36260 17 0 5 310 0 2 93 0 2 36 1 0 301 7 8 72 1 4 386 chain 541485 chr2 243199373 + 147908360 147914536 L1PA4 6152 + 2 6151 2592 578 1 0 256 17 0 341 0 6 61 1 0 171 0 4 698 0 1 1053 1 0 12 2 0 160 20 4 312 3 2 1692 0 1 797 chain 504734 chr2 243199373 + 147939790 147946097 L1PA7 6471 + 5 6469 6559 143 0 6 6 17 11 111 5 13 615 4 118 445 0 1 98 0 3 100 2 1 297 0 3 2 3 0 13 0 1 216 1 10 301 0 2 118 0 2 97 1 6 448 23 13 35 0 3 196 0 6 39 14 13 19 7 8 312 1 0 152 1 2 319 1 0 4 7 9 159 8 8 85 1 0 4 0 1 86 0 8 928 0 1 24 0 3 777 0 1 62 chain 39297 chr2 243199373 + 147974127 147974650 MER41A 554 - 9 543 70336 68 4 9 24 0 4 115 6 7 225 5 6 76 chain 128570 chr2 243199373 + 147974670 147976604 MER41-int 2638 - 2 2276 28429 144 18 23 4 1 0 12 0 1 177 0 1 52 0 2 123 4 0 17 0 3 9 7 12 29 7 0 6 2 0 108 8 6 32 4 2 20 3 5 336 0 1 165 66 372 141 10 24 76 12 13 14 5 7 21 1 0 31 0 4 44 1 4 34 13 17 75 14 18 43 0 1 45 chain 20769 chr2 243199373 + 147990681 147990916 L1PA5 6144 + 5893 6128 124720 235 chain 19192 chr2 243199373 + 148004608 148004844 L1PA5 6144 - 0 241 129550 162 5 10 69 chain 24066 chr2 243199373 + 148004852 148005137 L1PA5 6144 + 5577 5886 109950 217 1 25 67 chain 118959 chr2 243199373 + 148025794 148027351 THE1B-int 1605 - 5 1605 31435 5 2 0 757 2 0 162 1 0 153 6 5 37 6 5 20 1 26 12 8 26 107 0 1 125 0 3 70 0 1 68 0 2 15 chain 192278 chr2 243199373 + 148038705 148041389 L1PA8 5853 + 3241 5813 19843 36 11 10 107 8 6 25 113 8 167 16 10 260 3 4 85 0 1 34 0 2 161 0 3 105 1 2 32 0 1 37 1 0 382 15 14 269 5 7 72 6 7 472 6 5 30 2 1 12 2 0 71 1 0 8 2 0 7 0 1 45 2 1 19 1 0 53 chain 6322 chr2 243199373 + 148059452 148059595 MER58A 224 - 9 163 182629 62 56 67 25 chain 43797 chr2 243199373 + 148066326 148066849 L1PA7 6471 - 14 538 64458 323 1 2 199 chain 50765 chr2 243199373 + 148068876 148069499 LTR12_ 688 + 0 688 58454 25 1 0 55 0 66 21 5 4 40 0 1 476 chain 420977 chr2 243199373 + 148069525 148074592 HERV9-int 5642 + 5 5077 9512 596 5 2 188 1 0 88 1 86 78 84 4 60 3 0 1269 0 4 262 2 0 333 0 3 598 6 7 1226 1 2 266 chain 47664 chr2 243199373 + 148076277 148076904 LTR12_ 688 + 0 688 60725 25 1 0 43 5 72 27 1 0 39 10 11 30 0 1 18 13 7 415 chain 32142 chr2 243199373 + 148091808 148092179 L1PA5 6144 + 5777 6142 80625 214 6 0 151 chain 32860 chr2 243199373 + 148124189 148124565 L1PA4 6152 - 9 378 79436 146 7 0 223 chain 11629 chr2 243199373 + 148135204 148135463 L1MC2 1988 + 1553 1818 153778 116 1 0 7 99 106 36 chain 17543 chr2 243199373 + 148146937 148147195 MER50 708 + 428 686 134149 55 33 32 88 0 1 82 chain 280968 chr2 243199373 + 148167527 148171294 L1PA8 5853 - 8 3823 14586 85 1 0 19 2 1 30 34 32 70 2 0 44 1 0 380 30 30 142 1 3 11 4 0 25 7 8 439 1 12 149 0 1 164 0 4 55 25 30 154 1 0 19 0 8 333 4 5 189 0 11 90 0 1 100 1 5 53 0 1 136 1 2 63 3 7 62 1 2 442 0 1 331 20 23 43 chain 17699 chr2 243199373 + 148233242 148233595 THE1B 368 - 0 368 133706 15 4 5 104 50 93 24 35 8 37 1 0 7 0 1 59 2 0 15 chain 100252 chr2 243199373 + 148264297 148265791 LTR12C 1709 + 0 1709 36708 40 12 3 147 98 111 163 12 10 72 8 1 63 12 0 44 0 119 64 1 0 234 0 47 97 44 13 54 3 1 115 0 102 41 1 0 86 1 0 82 chain 156220 chr2 243199373 + 148273613 148275517 L1PA7 6471 - 3 1927 23830 11 1 0 78 0 1 65 5 6 606 7 8 73 15 18 59 1 0 38 0 1 64 6 7 338 0 6 415 0 8 122 chain 10005 chr2 243199373 + 148285705 148286014 THE1B 368 - 23 339 160559 14 26 25 65 127 133 22 4 6 51 chain 519021 chr2 243199373 + 148338073 148344470 L1PA7 6471 - 42 6456 5268 103 23 24 202 2 0 67 0 3 70 1 0 78 0 1 259 2 1 77 1 2 82 0 1 782 0 8 143 0 1 142 0 7 174 0 3 5 4 1 94 6 0 784 0 1 108 1 4 102 0 4 148 0 1 310 1 3 67 1 3 26 1 2 47 1 0 116 23 0 209 0 4 254 1 2 5 0 3 539 0 1 79 0 2 126 6 5 341 5 7 389 1 3 145 5 20 11 16 1 212 chain 2979 chr2 243199373 + 148351398 148351432 MLT1D 503 + 434 468 225468 34 chain 28350 chr2 243199373 + 148360573 148360877 AluYg6 310 - 5 309 91769 304 chain 2156 chr2 243199373 + 148443317 148443358 LTR12C 1709 - 672 713 171746 41 chain 15753 chr2 243199373 + 148443358 148443746 LTR12C 1709 - 506 781 139104 43 41 0 41 4 51 39 78 0 23 41 0 78 chain 2865 chr2 243199373 + 148443631 148443668 LTR12C 1709 - 748 822 193976 6 0 37 31 chain 3119 chr2 243199373 + 148445412 148445472 L1MA5A 2387 - 14 70 222575 14 2 0 19 2 1 9 1 0 13 chain 4696 chr2 243199373 + 148471043 148471123 5S 121 - 31 121 198567 43 17 27 20 chain 556000 chr2 243199373 + 148484573 148490597 L1PA2 6032 + 1 6031 725 4228 0 4 1633 1 6 4 5 0 140 0 2 13 chain 143750 chr2 243199373 + 148500993 148502576 L1PA3long 6157 - 1047 2622 25526 1316 8 0 259 chain 94099 chr2 243199373 + 148502576 148503596 L1PA3long 6157 + 5111 6134 38238 246 0 3 774 chain 545737 chr2 243199373 + 148524091 148530202 L1PA4 6152 + 0 6143 1984 28 0 2 2614 0 26 538 1 0 999 0 1 143 0 4 1788 chain 2967 chr2 243199373 + 148585097 148585131 LTR12C 1709 + 1034 1068 225730 34 chain 3457 chr2 243199373 + 148585140 148585180 LTR12C 1709 + 676 716 216055 40 chain 3871 chr2 243199373 + 148585218 148585260 LTR12C 1709 + 676 718 209291 42 chain 53580 chr2 243199373 + 148664405 148665131 L1PA8 5853 - 0 718 56622 93 1 0 19 2 1 28 0 1 11 33 30 62 2 0 44 1 0 394 1 0 35 chain 64582 chr2 243199373 + 148688425 148689125 L1PA2 6032 - 1 701 50761 700 chain 52630 chr2 243199373 + 148689125 148689721 L1P1 4361 + 3732 4328 57221 418 1 0 45 0 2 108 1 0 23 chain 23739 chr2 243199373 + 148697903 148698400 L1PB1 5432 + 4892 5271 111837 110 23 0 101 63 0 14 35 17 12 17 12 11 3 1 50 2 1 16 6 0 34 chain 66506 chr2 243199373 + 148752488 148753444 LTR12 884 + 0 869 49863 25 1 0 51 27 0 22 3 6 61 0 4 126 36 0 83 39 8 218 12 13 252 chain 343000 chr2 243199373 + 148758952 148763113 L1PA7 6471 + 2079 6470 11808 559 1 2 199 3 1 6 1 0 242 0 1 395 1 2 8 5 3 79 0 3 250 1 0 381 0 2 310 0 2 431 2 0 40 1 0 166 4 1 56 4 0 58 3 1 27 0 11 126 0 205 588 1 5 67 10 9 55 9 28 72 chain 37155 chr2 243199373 + 148766008 148766511 LTR10F 562 + 0 562 73306 152 12 43 34 0 24 13 5 11 198 2 0 87 chain 5455 chr2 243199373 + 148772813 148772876 HSMAR1 1287 + 0 63 190474 63 chain 5646 chr2 243199373 + 148775383 148775448 MER3 215 - 70 135 188598 65 chain 27217 chr2 243199373 + 148885394 148885829 L1PA11 4918 - 351 766 95537 13 1 0 15 48 35 16 2 1 11 3 1 68 17 14 68 1 0 45 0 1 127 chain 24133 chr2 243199373 + 148896783 148897080 AluSp 311 - 20 311 109565 238 3 0 5 3 0 48 chain 218108 chr2 243199373 + 148901048 148903573 L1PA5 6144 - 2 2556 17999 59 4 0 9 0 4 59 1 24 448 0 6 1668 12 13 178 2 1 85 chain 548261 chr2 243199373 + 148906509 148912525 L1PA2 6032 - 2 6030 1669 2613 1 2 359 0 1 250 0 1 208 0 1 1745 0 1 143 1 8 696 chain 17654 chr2 243199373 + 148914706 148914917 L1PA7 6471 - 3 210 133828 7 4 0 200 chain 564253 chr2 243199373 + 148946314 148952342 L1HS 6032 + 2 6032 228 594 0 1 3975 0 1 1459 chain 7424 chr2 243199373 + 148975431 148975522 HERVH-int 3825 + 2166 2256 174625 5 1 0 85 chain 268165 chr2 243199373 + 148983691 148986700 L1PA4 6152 - 8 3034 15279 152 0 1 1639 0 4 664 0 2 505 1 0 12 0 1 16 0 10 20 chain 4909 chr2 243199373 + 148993175 148993258 Tigger1 2417 - 0 106 196174 42 0 17 14 11 17 16 chain 45496 chr2 243199373 + 148997464 148997984 L1PA5 6144 + 5613 6132 62500 192 1 0 327 chain 22486 chr2 243199373 + 149011213 149011498 LTR18A 364 - 0 309 118080 112 5 30 121 1 0 46 chain 13646 chr2 243199373 + 149031802 149031974 L1PA7 6471 - 5 176 145794 7 2 0 135 0 1 28 chain 28083 chr2 243199373 + 149062350 149062661 AluYa5 310 + 1 309 92699 96 3 0 212 chain 520216 chr2 243199373 + 149065216 149071668 L1PA7 6471 - 5 6471 5134 326 0 2 7 5 3 271 0 1 145 0 1 85 5 1 10 24 13 40 5 33 8 28 0 81 0 1 766 7 11 11 0 7 210 14 0 211 0 12 54 0 1 318 1 2 338 2 0 96 0 1 606 4 2 10 1 0 9 0 2 6 1 0 129 1 2 1243 0 3 751 17 29 203 1 2 45 0 1 357 chain 24011 chr2 243199373 + 149074643 149074949 AluSp 311 + 8 293 110265 114 21 0 171 chain 12581 chr2 243199373 + 149078776 149078959 MER30 238 - 0 200 149916 16 1 0 95 5 0 6 4 25 11 0 2 45 chain 535030 chr2 243199373 + 149080417 149086423 L1PA3long 6157 - 1 6145 3588 868 0 4 600 0 6 215 0 3 2902 13 8 406 0 1 239 0 128 622 0 1 141 chain 33386 chr2 243199373 + 149102699 149103669 MLT2A1 477 - 0 477 78596 18 2 1 31 520 24 7 1 0 173 0 1 48 1 5 169 chain 4050 chr2 243199373 + 149103831 149103882 MER45R 1085 + 641 692 206649 51 chain 65987 chr2 243199373 + 149111677 149112512 L1PA8 5853 - 0 840 50106 93 1 0 19 2 1 52 5 1 8 2 1 70 2 0 44 1 0 327 0 1 122 3 17 84 chain 516273 chr2 243199373 + 149119291 149126047 L1PA7 6471 + 0 6467 5550 139 10 42 112 8 9 101 0 2 156 4 5 741 0 1 238 305 0 48 69 18 372 0 1 62 1 2 445 0 3 137 1 2 252 8 12 203 1 0 206 1 2 166 1 12 338 0 2 7 2 1 5 0 1 986 0 1 44 1 0 338 0 1 408 1 0 218 4 5 75 0 1 393 1 9 6 7 0 115 0 2 11 0 2 9 chain 5271 chr2 243199373 + 149121163 149121219 L1PA7 6471 + 1121 1177 192310 56 chain 11435 chr2 243199373 + 149131501 149131678 Tigger4a 237 + 29 236 154548 31 13 18 92 1 26 40 chain 492199 chr2 243199373 + 149138172 149143690 L1PA4 6152 + 618 6152 7257 117 0 1 327 0 2 348 0 10 778 0 4 1477 4 0 1347 1 0 275 0 4 844 chain 29231 chr2 243199373 + 149144005 149144315 AluYa5 310 + 0 309 87900 132 1 0 177 chain 217083 chr2 243199373 + 149155231 149157673 L1PA4 6152 - 9 2452 18053 254 2 1 437 0 2 1749 chain 17070 chr2 243199373 + 149175712 149175935 L1PB3 3668 - 659 884 135403 18 1 3 152 1 0 6 0 1 45 chain 74756 chr2 243199373 + 149181798 149182751 L1PA4 6152 + 2332 3286 46133 732 6 4 6 0 1 23 5 6 78 0 1 103 chain 58673 chr2 243199373 + 149182753 149183478 L1PA4 6152 + 3286 4011 53596 725 chain 169438 chr2 243199373 + 149183478 149185369 L1PA4 6152 + 4247 6152 22125 801 0 1 719 1 14 370 chain 111607 chr2 243199373 + 149185422 149186725 L1PA7 6471 + 4317 5621 33776 637 0 1 666 chain 67489 chr2 243199373 + 149186726 149187556 L1PA7 6471 + 5621 6452 49454 89 1 0 150 0 1 462 6 7 122 chain 94916 chr2 243199373 + 149198677 149199744 L1PA4 6152 - 0 1070 38119 7 0 2 969 0 1 91 chain 103931 chr2 243199373 + 149202707 149203892 L1PA5 6144 - 0 1190 35745 675 0 2 154 0 5 14 2 0 340 chain 8668 chr2 243199373 + 149285312 149285438 MLT1B 390 + 231 374 167372 80 0 18 13 4 3 29 chain 16402 chr2 243199373 + 149291216 149291588 MLT1B 390 - 0 389 137202 27 30 30 81 2 0 5 2 0 6 13 24 39 11 16 20 51 57 34 1 0 50 chain 26307 chr2 243199373 + 149307962 149308237 AluYb8 318 + 32 307 98804 275 chain 199756 chr2 243199373 + 149320132 149322748 L1PA5 6144 + 3827 6135 19227 771 0 4 268 0 4 42 0 1 275 324 0 79 1 5 17 1 5 511 1 0 326 chain 21361 chr2 243199373 + 149354219 149354458 L1PA7 6471 + 6025 6264 122650 239 chain 16063 chr2 243199373 + 149354458 149354663 L1PA7 6471 + 6266 6470 138168 181 2 3 9 2 0 11 chain 24191 chr2 243199373 + 149377404 149377762 THE1C 375 - 12 373 109268 13 1 0 152 17 12 5 0 2 26 11 15 19 0 1 103 0 2 11 chain 53849 chr2 243199373 + 149385894 149386708 L1PB1 5432 - 9 813 56456 5 1 0 25 1 0 23 1 0 24 2 0 14 1 0 5 3 1 9 14 6 15 3 0 15 1 0 45 18 16 25 0 2 25 2 0 9 0 5 20 1 0 17 0 1 10 0 3 42 0 1 73 0 3 78 4 5 277 1 0 5 chain 4849 chr2 243199373 + 149419501 149419553 L1PA4 6152 + 5252 5304 196789 52 chain 73329 chr2 243199373 + 149419553 149420396 L1PA4 6152 + 5308 6151 46872 771 12 12 60 chain 117134 chr2 243199373 + 149435152 149436521 LTR12C 1709 - 0 1709 32078 84 1 0 397 0 4 78 0 46 114 0 278 409 0 13 286 chain 55688 chr2 243199373 + 149439295 149439945 L1PA6 6164 - 3 652 55313 164 1 0 485 chain 58582 chr2 243199373 + 149441139 149442088 L1PB1 5432 - 153 1152 53652 106 8 6 8 2 0 3 2 0 12 1 0 10 1 0 20 3 0 7 36 46 30 14 18 74 0 7 34 1 0 60 39 41 92 0 1 23 1 0 72 0 4 121 0 2 33 0 6 100 0 27 36 chain 23073 chr2 243199373 + 149445711 149445966 L1PA4 6152 + 5723 5978 115283 255 chain 15325 chr2 243199373 + 149445968 149446141 L1PA4 6152 + 5978 6151 140409 173 chain 10238 chr2 243199373 + 149460326 149460517 MER30 238 + 33 238 159431 25 10 11 43 4 0 6 5 20 10 1 0 5 1 7 39 3 0 39 chain 464322 chr2 243199373 + 149462937 149468466 L1PA5 6144 + 0 6035 8245 89 0 525 138 15 17 97 0 2 79 26 1 217 13 4 240 1 6 520 1 0 248 0 1 802 0 1 137 1 0 123 0 5 1099 0 1 306 7 6 217 1 0 406 1 0 428 0 2 103 0 1 214 chain 336108 chr2 243199373 + 149472060 149476980 L1PA11 4918 - 340 4899 11995 11 2 0 13 1 0 15 31 22 9 4 0 19 1 0 17 2 0 78 2 1 51 5 6 5 1 0 41 1 0 224 317 0 39 0 1 259 0 1 446 0 1 197 4 0 67 0 3 133 3 2 33 19 0 119 0 3 48 0 1 86 0 1 261 0 3 60 8 13 18 1 0 10 16 21 9 0 1 22 0 6 6 39 19 296 4 0 67 2 1 66 4 1 118 0 2 38 1 0 98 3 7 333 4 7 54 0 2 392 1 0 124 1 2 22 0 4 7 12 8 187 4 3 119 15 13 28 1 0 48 2 0 51 4 1 36 2 0 23 chain 27705 chr2 243199373 + 149479979 149480450 L1PA15 4387 + 3895 4356 94026 21 0 5 12 1 0 161 0 1 4 6 5 26 1 0 44 6 7 4 1 0 22 4 0 10 1 0 50 6 3 32 32 27 27 chain 15633 chr2 243199373 + 149495277 149495486 MER30 238 - 0 220 139486 39 3 0 74 4 18 89 chain 138368 chr2 243199373 + 149547615 149549254 L1PA7 6471 - 25 1681 26421 123 0 1 6 6 4 302 5 13 9 0 1 313 0 1 48 0 1 287 0 7 540 chain 44849 chr2 243199373 + 149549254 149549774 L1PA7 6471 + 4254 4784 63034 161 1 3 245 0 8 113 chain 20226 chr2 243199373 + 149583404 149583705 THE1B 368 + 0 307 126447 169 2 0 6 0 1 4 0 2 13 0 3 16 7 11 5 1 0 12 10 9 56 chain 6598 chr2 243199373 + 149601557 149601637 L1PA16 3655 - 1489 1569 180469 80 chain 23478 chr2 243199373 + 149810394 149810681 L1PA7 6471 - 2 298 113226 10 2 0 7 1 0 164 3 15 100 chain 22357 chr2 243199373 + 149820535 149820803 AluSp 311 + 28 296 118675 268 chain 16711 chr2 243199373 + 149845500 149845845 L1PB1 5432 - 10 318 136370 18 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 8 6 13 25 12 16 1 0 33 0 1 10 1 0 15 2 1 25 6 0 27 17 11 13 1 0 6 1 0 24 chain 3797 chr2 243199373 + 149855677 149855749 Charlie4a 502 - 68 140 210437 21 5 0 7 6 11 33 chain 7576 chr2 243199373 + 149870448 149870547 L1PA8 5853 - 0 98 173693 93 1 0 5 chain 43724 chr2 243199373 + 149891856 149892353 LTR2C 499 + 0 499 64538 172 0 3 266 2 1 57 chain 4103 chr2 243199373 + 149896043 149896093 MIRc 230 + 64 114 205894 50 chain 36370 chr2 243199373 + 149922707 149923115 L1PA4 6152 - 15 424 74400 98 0 1 310 chain 20817 chr2 243199373 + 149978935 149979178 L1PA5 6144 - 0 243 124545 243 chain 19245 chr2 243199373 + 149980112 149980377 AluSc 308 + 17 283 129394 117 22 28 8 4 0 88 1 0 25 chain 3749 chr2 243199373 + 150005691 150005736 MADE1 96 - 50 96 211151 19 0 1 26 chain 2838 chr2 243199373 + 150022910 150022940 MIR 256 + 90 120 228096 30 chain 27018 chr2 243199373 + 150028505 150028875 THE1C 375 - 0 375 96222 26 1 0 11 1 2 138 3 4 69 3 0 82 0 7 36 chain 40749 chr2 243199373 + 150089900 150090529 L1PB2 3958 + 3217 3836 68239 13 0 1 78 2 0 12 1 8 34 1 0 5 11 6 54 9 10 10 2 0 3 2 0 94 4 2 70 1 0 62 1 0 74 2 0 21 5 4 58 chain 36293 chr2 243199373 + 150096652 150097121 LTR15 485 + 0 474 74512 107 0 1 38 10 12 118 0 4 157 1 0 5 2 0 16 0 1 15 chain 3289 chr2 243199373 + 150097685 150097721 L1PB2 3958 + 3577 3613 219190 36 chain 3436 chr2 243199373 + 150097721 150097765 L1PB2 3958 + 3625 3669 216458 44 chain 5671 chr2 243199373 + 150098089 150098155 L1PB2 3958 + 3682 3748 188379 66 chain 2958 chr2 243199373 + 150098209 150098243 L1PB2 3958 + 3804 3838 225905 34 chain 517525 chr2 243199373 + 150107822 150114616 L1PA7 6471 - 2 6468 5421 10 2 0 349 0 1 360 0 1 106 0 1 691 1 0 395 0 21 525 0 1 96 0 1 66 0 1 8 0 1 8 1 0 227 369 1 234 0 1 251 46 30 35 16 9 556 0 1 128 5 6 56 0 1 188 0 34 419 4 5 290 12 6 6 0 2 555 6 5 363 5 8 8 0 1 142 13 14 242 chain 17110 chr2 243199373 + 150110667 150110889 L1PA7 6471 - 2872 3095 135282 63 14 15 145 chain 11972 chr2 243199373 + 150110889 150111036 L1PA7 6471 - 2723 2871 151015 29 2 3 116 chain 88156 chr2 243199373 + 150140211 150141199 L1PA4 6152 + 5163 6151 40318 988 chain 8397 chr2 243199373 + 150174798 150174920 HERVK14-int 1672 + 9 129 168873 17 9 8 7 1 0 88 chain 156678 chr2 243199373 + 150174925 150176692 L1PA4 6152 - 0 1775 23772 6 0 5 814 24 26 123 0 1 800 chain 5263 chr2 243199373 + 150178384 150178447 HERVK14-int 1672 + 1603 1665 192388 56 1 0 6 chain 27305 chr2 243199373 + 150181034 150181365 LTR14A 344 + 0 344 95263 105 0 2 59 0 8 35 1 0 57 0 4 74 chain 20360 chr2 243199373 + 150194437 150194843 L1PA15 4387 - 21 387 126036 9 1 0 19 13 12 11 3 1 37 1 0 6 39 11 40 7 6 6 4 0 17 0 1 5 2 1 53 1 0 26 2 1 104 chain 4940 chr2 243199373 + 150222208 150222264 U2 167 - 111 167 195793 56 chain 27621 chr2 243199373 + 150241245 150241548 L1PA3long 6157 - 0 303 94294 303 chain 51217 chr2 243199373 + 150258248 150259233 L1PB1 5432 - 10 793 58177 18 1 0 13 1 0 21 1 0 24 27 22 15 9 0 13 2 0 14 1 0 45 1 0 15 3 2 38 148 0 14 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 49 19 261 3 0 22 0 9 164 chain 10030 chr2 243199373 + 150258523 150258646 L1PA8 5853 + 5726 5847 160426 16 1 0 18 1 0 87 chain 503017 chr2 243199373 + 150259246 150264798 L1PA3long 6157 - 0 5554 6668 857 1 0 2012 0 1 684 0 1 278 1 2 1719 chain 461483 chr2 243199373 + 150350787 150356562 L1PA8 5853 - 0 5803 8349 93 1 0 19 2 1 43 10 9 7 1 0 73 2 0 22 0 2 22 1 0 289 0 1 263 0 3 298 0 1 373 1 0 291 0 1 49 0 2 237 0 1 539 0 1 442 0 1 285 0 4 124 0 6 76 0 4 253 4 31 459 1 2 246 1 13 323 0 1 340 0 4 290 7 11 31 0 2 157 10 19 7 49 0 10 2 0 22 chain 543122 chr2 243199373 + 150357743 150363920 L1PA4 6152 - 1 6152 2324 259 1 0 779 0 1 344 9 10 457 1 0 550 0 1 298 0 1 84 15 0 587 0 4 281 1 0 4 0 1 1654 23 6 254 1 0 180 1 2 394 chain 195276 chr2 243199373 + 150374010 150376751 L1PB1 5432 + 2888 5418 19561 832 0 6 202 0 1 700 12 1 78 3 0 94 1 2 47 0 1 24 0 1 133 2 0 5 0 2 86 174 2 9 4 0 16 5 4 13 17 12 8 2 0 53 2 1 16 1 0 44 1 0 11 8 5 14 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 200109 chr2 243199373 + 150379049 150381620 L1PA11 4918 - 470 3048 19200 54 2 1 65 0 3 15 3 0 14 1 3 181 3 4 448 2 0 457 0 1 283 8 8 57 1 0 4 0 1 330 1 2 13 4 5 14 0 2 185 0 4 27 0 4 22 10 11 10 8 6 82 16 11 251 chain 543200 chr2 243199373 + 150401601 150407731 L1PA4 6152 - 1 6144 2314 43 4 2 1754 0 4 833 1 2 498 0 10 1011 1 2 1416 1 0 568 chain 17687 chr2 243199373 + 150415494 150415751 AluY 311 + 28 256 133731 25 0 1 77 1 3 73 33 1 48 chain 8080 chr2 243199373 + 150419904 150420003 Tigger3a 397 - 135 239 170591 81 0 5 18 chain 19328 chr2 243199373 + 150456641 150456983 L1PA15 4387 + 4033 4357 129150 71 2 1 26 11 10 44 1 0 21 4 0 10 2 1 46 10 7 44 3 1 12 7 2 28 chain 71252 chr2 243199373 + 150492408 150493249 L1PA7 6471 - 4 845 47829 154 5 6 607 1 0 74 chain 487228 chr2 243199373 + 150494401 150499999 L1PA4 6152 - 0 5616 7470 6 0 5 386 0 3 342 0 3 1047 1 5 935 1 0 116 0 1 92 0 1 7 22 20 138 0 1 770 1 0 1328 0 4 406 chain 39436 chr2 243199373 + 150500000 150500505 L1P1 4361 - 3832 4354 70109 8 0 3 58 0 12 110 0 2 185 1 15 15 14 0 114 chain 30580 chr2 243199373 + 150504566 150504939 L1P3 4156 + 3627 4001 83240 198 0 1 175 chain 235347 chr2 243199373 + 150528037 150530947 L1PA7 6471 - 7 3002 17004 21 26 26 717 0 2 81 0 3 25 0 14 456 11 16 291 0 12 13 23 0 282 0 66 651 0 6 240 4 5 40 2 1 27 chain 35383 chr2 243199373 + 150541640 150542166 L1MA2 4263 + 3585 4106 75687 77 1 0 124 15 17 6 3 0 95 0 1 19 1 6 25 1 0 11 7 6 86 7 0 48 chain 143697 chr2 243199373 + 150610015 150611732 L1PA7 6471 + 4762 6457 25533 254 35 5 422 0 1 175 0 6 618 0 1 213 chain 39691 chr2 243199373 + 150615774 150616244 L1PA7 6471 - 7 477 69767 470 chain 29672 chr2 243199373 + 150626980 150627290 AluYa5 310 - 0 310 85938 310 chain 532827 chr2 243199373 + 150647144 150653261 L1PA5 6144 - 2 6144 3872 847 0 4 9 0 1 786 0 4 579 0 1 234 1 0 168 1 0 67 0 9 862 0 3 391 0 1 941 1 0 193 0 5 1037 chain 13677 chr2 243199373 + 150660850 150661113 Tigger3a 397 - 31 344 145683 20 39 41 142 9 8 15 21 70 17 chain 4054 chr2 243199373 + 150665040 150665099 MER53 195 - 21 84 206575 36 1 4 11 0 1 11 chain 14773 chr2 243199373 + 150677356 150677542 L1PA4 6152 - 1242 1466 141054 63 0 4 88 1 35 34 chain 110234 chr2 243199373 + 150677542 150678776 L1PA4 6152 + 4902 6140 34145 402 0 4 832 chain 430437 chr2 243199373 + 150690610 150696348 L1PA7 6471 - 6 5732 9301 354 1 0 489 1 3 278 1 0 10 2 0 48 1 0 45 0 1 262 3 1 5 0 2 18 1 0 630 0 3 654 1 2 48 1 2 81 4 0 26 1 0 328 17 0 75 0 4 8 4 5 133 0 1 268 339 0 47 0 2 89 0 1 176 4 0 149 2 1 179 3 4 33 0 335 40 0 1 237 1 2 108 7 9 310 19 21 28 0 1 169 chain 544367 chr2 243199373 + 150706971 150712980 L1PA2 6032 + 0 6031 2160 40 1 14 17 1 2 183 1 0 702 1 0 1306 0 4 301 1 0 3305 0 7 150 chain 181930 chr2 243199373 + 150721075 150723322 L1PA7 6471 + 4222 6467 20793 445 4 8 143 0 4 265 0 3 356 1 0 4 0 1 169 1 4 135 31 0 133 0 4 69 1 2 323 0 1 24 0 9 143 chain 57093 chr2 243199373 + 150735331 150736004 L1PA4 6152 - 2231 2898 54273 168 3 0 76 3 0 423 chain 183124 chr2 243199373 + 150736004 150738227 L1PA4 6152 + 3918 6152 20668 168 0 3 247 1 0 475 134 134 332 0 6 717 1 4 148 chain 230815 chr2 243199373 + 150767424 150770329 L1PA8 5853 + 2955 5853 17265 36 0 1 212 24 9 482 0 6 188 0 1 299 0 2 500 0 1 134 1 10 170 0 2 86 0 1 41 12 2 401 0 1 26 1 0 42 2 0 67 7 6 9 1 0 13 0 1 36 2 1 19 4 3 90 chain 13069 chr2 243199373 + 150787066 150787299 L1MA5A 2387 + 2108 2306 147954 43 9 7 29 1 0 30 3 0 13 28 0 66 1 0 10 chain 557510 chr2 243199373 + 150801779 150807806 L1PA2 6032 + 1 6029 554 255 1 0 1109 0 1 1575 0 1 3087 chain 25621 chr2 243199373 + 150815388 150815706 MLT2A1 477 + 0 322 101621 17 0 4 5 0 1 142 4 1 12 0 1 21 0 1 117 chain 189404 chr2 243199373 + 150816350 150818902 L1PA10 4194 - 34 2553 20107 10 1 0 7 1 0 26 4 1 106 0 1 276 1 0 20 8 9 212 0 1 271 5 4 593 0 1 173 0 1 240 1 0 4 0 1 166 1 0 76 3 1 9 8 7 58 28 0 46 5 6 193 chain 533865 chr2 243199373 + 150822247 150828374 L1PA4 6152 + 0 6143 3721 601 0 1 321 0 1 519 3 12 120 0 1 1648 0 1 600 1 2 424 0 1 102 0 4 12 0 1 1744 4 0 28 chain 454316 chr2 243199373 + 150834484 150840523 L1PA7 6471 + 773 6470 8601 309 32 12 29 0 1 260 2 3 65 0 1 96 0 1 238 3 8 359 0 1 332 10 12 136 1 2 703 1 0 59 0 1 137 2 0 47 0 2 63 0 4 182 1 0 173 2 0 940 1 0 149 23 1 232 0 7 78 0 1 203 13 12 49 0 4 116 319 0 330 0 1 144 0 1 141 7 0 52 chain 100424 chr2 243199373 + 150866337 150867440 L1PA4 6152 + 4895 6001 36648 461 0 3 642 chain 12893 chr2 243199373 + 150867440 150867592 L1PA4 6152 + 6002 6151 148658 144 3 0 5 chain 6239 chr2 243199373 + 150876595 150876809 MER96B 391 + 132 337 183260 23 106 92 22 1 0 10 1 7 51 chain 27849 chr2 243199373 + 150894975 150895267 AluYd8 298 - 5 297 93528 292 chain 33409 chr2 243199373 + 150906126 150906568 MER75 514 - 0 448 78549 25 0 1 356 1 3 14 12 15 34 chain 10924 chr2 243199373 + 150912007 150912178 MSTA 426 + 236 426 156512 12 9 9 43 9 28 98 chain 14368 chr2 243199373 + 150913588 150913742 AluYd8 298 + 144 298 143316 154 chain 102691 chr2 243199373 + 150933777 150934974 L1PA6 6164 - 2 1194 36078 8 4 0 842 1 0 342 chain 31266 chr2 243199373 + 150969230 150969678 LTR7 482 + 0 477 82051 101 20 14 115 0 31 103 0 1 11 6 8 35 16 17 41 chain 292085 chr2 243199373 + 150969685 150973367 HERVH-int 3825 + 0 3825 13894 180 0 2 151 2 1 30 15 16 89 1 0 4 31 32 27 1 0 10 1 89 12 14 75 61 1 0 350 0 3 104 16 1 180 0 3 9 9 0 25 1 3 13 1 0 69 1 2 162 4 0 297 0 4 82 10 15 210 0 1 765 0 3 328 20 21 396 chain 31621 chr2 243199373 + 150974623 150975066 LTR7 482 + 0 470 81451 101 20 14 115 0 31 104 1 2 52 17 18 33 chain 21119 chr2 243199373 + 150975192 150975482 AluY 311 + 11 293 123488 110 6 0 11 0 1 4 5 6 30 7 3 117 chain 20149 chr2 243199373 + 151023728 151023996 AluY 311 + 42 309 126677 90 11 12 156 2 0 9 chain 7952 chr2 243199373 + 151027432 151027530 LTR12C 1709 - 683 781 171320 98 chain 165585 chr2 243199373 + 151035852 151037700 L1PA3long 6157 - 1 1852 22574 125 5 6 840 0 1 561 0 1 317 chain 484507 chr2 243199373 + 151048818 151055118 L1PA7 6471 + 427 6465 7574 39 1 0 7 1 2 231 11 12 132 0 1 15 0 2 133 0 1 4 8 7 238 1 0 18 11 12 115 1 4 507 0 1 127 1 0 291 4 5 13 1 0 175 0 2 365 0 4 273 2 0 70 0 1 98 0 1 69 0 1 100 1 0 69 1 5 30 1 2 392 3 0 5 0 3 509 1 3 36 291 0 432 1 2 427 1 2 87 0 3 59 0 1 29 0 4 18 1 0 45 0 1 31 0 2 759 3 0 6 chain 13410 chr2 243199373 + 151097483 151097672 MER47A 366 - 37 230 146674 73 12 16 104 chain 6288 chr2 243199373 + 151135238 151135328 MLT1A0 366 + 259 342 182901 16 7 0 67 chain 68320 chr2 243199373 + 151173367 151174130 L1PA3long 6157 + 5392 6157 49116 108 0 1 506 0 1 149 chain 120551 chr2 243199373 + 151179075 151180959 L1PB1 5432 - 10 1785 30856 18 1 0 13 1 0 21 1 0 24 3 1 12 2 1 5 2 0 16 23 11 4 1 0 16 1 0 44 1 0 11 6 5 52 135 53 10 1 2 182 26 0 67 0 2 37 0 8 13 15 7 109 0 1 53 1 2 51 10 13 210 0 13 93 0 1 177 9 8 123 0 3 202 1 0 81 chain 9151 chr2 243199373 + 151247771 151247985 Tigger3a 397 + 54 327 164807 21 15 64 36 5 15 41 1 42 9 41 0 45 chain 42335 chr2 243199373 + 151274198 151274748 MER41A 554 - 0 554 66227 70 10 15 102 1 0 367 chain 120090 chr2 243199373 + 151291567 151293124 THE1B-int 1605 + 0 1600 31026 113 0 3 166 0 2 29 0 1 80 1 2 34 0 25 326 13 18 431 27 33 337 chain 32324 chr2 243199373 + 151318364 151318837 MLT2A1 477 + 0 477 80319 141 3 4 27 0 4 34 4 2 116 1 0 17 0 6 44 3 0 12 23 23 28 1 0 19 chain 111212 chr2 243199373 + 151379433 151380859 THE1C-int 1605 + 16 1592 33884 35 9 12 60 0 1 108 0 1 134 0 1 72 5 12 273 9 18 353 0 128 368 chain 12980 chr2 243199373 + 151382486 151382902 MER4B 649 - 202 649 148313 22 1 0 4 63 41 11 6 12 108 28 50 29 99 127 12 2 0 31 chain 2998 chr2 243199373 + 151393668 151393701 L1MA4 2864 + 2527 2560 225051 33 chain 16454 chr2 243199373 + 151398510 151398742 LTR12C 1709 - 506 772 137053 71 1 48 128 13 0 19 chain 23578 chr2 243199373 + 151433450 151433743 AluY 311 + 6 303 112695 116 0 1 8 0 2 81 1 2 87 chain 7841 chr2 243199373 + 151434361 151434459 MSTA-int 1630 - 0 99 172072 83 0 1 15 chain 90951 chr2 243199373 + 151518399 151519470 MER11C 1089 - 16 1089 39309 232 3 0 242 7 8 61 0 2 129 0 2 397 chain 296953 chr2 243199373 + 151523839 151527999 L1PB1 5432 + 1125 5424 13590 104 1 3 171 2 0 5 6 7 191 0 1 238 0 1 96 0 180 50 4 7 316 1 2 93 1 0 78 2 0 158 0 1 11 10 9 44 1 3 342 1 0 6 0 1 36 4 6 38 11 75 323 47 16 98 0 5 72 5 6 4 1 0 34 0 1 615 8 9 47 3 0 85 0 1 389 81 0 14 3 0 21 1 0 4 8 7 7 2 0 3 2 0 8 2 0 53 21 19 42 1 0 13 45 57 19 1 0 21 1 0 13 1 0 16 1 0 4 chain 7440 chr2 243199373 + 151554696 151554810 MER4C 627 - 524 626 174516 13 0 1 5 14 0 33 0 1 49 chain 46161 chr2 243199373 + 151585015 151585560 L1PA7 6471 - 1 559 61888 263 0 1 59 0 12 223 chain 296991 chr2 243199373 + 151649023 151653052 L1PA8A 6298 + 30 6291 13587 26 1 0 11 11 6 7 5 0 19 3 0 7 42 24 18 1 0 9 15 13 6 1 0 13 2 0 15 7 4 10 6 5 6 1 0 6 1 0 8 2 1 13 5 1 8 2 0 33 10 9 20 14 4 76 2 0 23 23 20 64 5 4 168 8 7 130 15 15 172 6 2309 52 6 5 170 8 9 322 5 6 246 0 1 40 4 0 571 1 2 740 2 0 72 12 14 620 1 0 101 chain 32850 chr2 243199373 + 151686449 151686892 MLT2A1 477 - 0 477 79457 61 3 31 61 1 0 150 1 5 6 0 1 21 0 1 6 0 1 133 chain 460564 chr2 243199373 + 151686892 151692527 HERVL-int 5654 - 0 5654 8382 77 3 18 106 0 2 17 1 0 4 0 1 72 0 1 244 11 7 558 9 1 242 0 4 1131 0 2 47 5 0 313 0 1 800 0 1 168 9 13 123 0 1 5 2 1 819 0 5 534 0 1 335 chain 28788 chr2 243199373 + 151692527 151692964 MLT2A1 477 - 0 477 89953 43 16 50 55 6 5 49 0 1 79 0 1 20 5 9 14 8 9 22 0 1 5 1 0 114 chain 387134 chr2 243199373 + 151693924 151699257 L1PB1 5432 - 28 5349 10544 13 1 0 21 1 0 24 2 0 14 8 5 19 8 0 10 8 5 12 1 0 40 5 4 18 1 0 52 2 0 9 16 11 12 1 0 17 17 15 288 12 11 6 0 1 171 11 9 407 29 13 18 16 16 90 1 0 334 10 4 60 0 4 646 0 7 4 0 1 178 5 6 242 0 5 329 1 2 4 0 1 16 0 6 43 0 10 85 16 20 216 0 4 227 1 0 13 0 5 198 17 9 97 1 0 128 16 19 388 0 1 118 18 19 79 12 11 112 1 2 337 chain 45154 chr2 243199373 + 151702163 151702714 MER41A 554 - 1 554 62867 163 0 1 324 0 1 64 chain 10941 chr2 243199373 + 151709119 151709249 LTR39 781 - 580 710 156437 130 chain 14016 chr2 243199373 + 151717218 151717522 THE1B 368 + 0 306 144526 78 12 7 23 14 15 32 61 59 12 0 15 11 7 0 54 chain 4084 chr2 243199373 + 151731998 151732150 MER5A 189 - 21 188 206149 27 90 104 20 0 1 15 chain 32619 chr2 243199373 + 151738067 151738497 MER57A1 433 + 0 433 79820 261 20 23 149 chain 7151 chr2 243199373 + 151784879 151785231 L1MA7 2200 + 1874 2172 176396 67 10 8 28 217 166 15 1 0 14 chain 257861 chr2 243199373 + 151810254 151819235 HERVH-int 3825 + 0 3825 15816 333 2 1 76 59 177 17 22 166 10 1 0 7 1 13 337 52 55 44 16 1 22 3 11 160 24 0 97 23 21 54 0 1 4 1 0 81 0 27 693 0 1 5 5 4 196 1 2 46 0 1 352 5430 0 77 0 3 730 chain 42457 chr2 243199373 + 151813000 151813600 HERVH-int 3825 + 3016 3825 66066 168 19 2 57 29 28 27 1 0 117 0 227 100 0 1 82 chain 5242 chr2 243199373 + 151816882 151816943 HERVH-int 3825 + 1625 1686 192604 61 chain 15035 chr2 243199373 + 151817110 151817324 HERVH-int 3825 + 1857 2075 141222 88 0 4 126 chain 66466 chr2 243199373 + 151817325 151818215 HERVH-int 3825 + 2077 2968 49887 371 0 1 351 0 35 10 39 4 119 chain 21490 chr2 243199373 + 151819444 151819737 L1PA8 5853 + 5564 5853 122177 46 4 2 38 0 2 28 1 0 6 5 4 53 1 0 17 1 0 93 chain 44575 chr2 243199373 + 151828848 151829388 MER41A 554 - 6 554 63504 31 0 3 41 0 5 468 chain 26762 chr2 243199373 + 151867734 151868014 AluY 311 + 27 307 97115 280 chain 20024 chr2 243199373 + 151891544 151891819 L1PB4 2604 + 2295 2570 127066 88 8 6 109 0 3 51 1 0 18 chain 25840 chr2 243199373 + 151903089 151903361 AluYa5 310 + 38 310 100703 272 chain 8588 chr2 243199373 + 151904502 151904622 MER85 139 - 0 132 167800 29 4 15 52 0 1 35 chain 27047 chr2 243199373 + 151918965 151919306 THE1A 353 - 12 353 96121 4 0 1 225 2 1 110 chain 54917 chr2 243199373 + 151923059 151923694 L1PA7 6471 - 3 638 55759 635 chain 21292 chr2 243199373 + 151929924 151930529 L1PA8 5853 - 0 319 122894 92 286 5 14 1 0 26 1 2 22 1 0 4 2 1 79 2 0 44 1 0 30 chain 36637 chr2 243199373 + 151938542 151938971 L1PA7 6471 + 6041 6470 74047 429 chain 10004 chr2 243199373 + 151951557 151951681 LTR44 473 + 340 464 160563 124 chain 25072 chr2 243199373 + 151961197 151961537 L1PA8 5853 + 5520 5853 104446 44 1 0 44 2 0 70 2 1 10 1 0 51 2 1 19 1 0 93 chain 6720 chr2 243199373 + 151962608 151962732 MER20 218 + 47 183 179532 31 33 45 60 chain 12326 chr2 243199373 + 151969214 151969358 L1PA7 6471 - 7 151 150906 144 chain 6497 chr2 243199373 + 151971617 151971909 MLT1C 463 - 166 458 181275 27 159 158 57 25 26 24 chain 11476 chr2 243199373 + 152006221 152006363 BC200 147 + 0 138 154395 132 4 0 6 chain 28301 chr2 243199373 + 152011512 152011951 L1PB2 3958 + 3410 3838 91941 29 17 12 94 4 2 39 3 0 16 1 2 13 1 0 58 8 7 93 1 0 4 0 1 58 chain 8516 chr2 243199373 + 152012339 152012446 L1MB2 1706 + 1395 1507 168214 58 0 5 49 chain 28825 chr2 243199373 + 152046599 152046904 AluYb8 318 + 0 305 89782 305 chain 26601 chr2 243199373 + 152054046 152054400 THE1B 368 - 0 368 97656 173 17 15 8 1 0 20 0 2 91 0 15 44 chain 2847 chr2 243199373 + 152058653 152058683 MLT2B4 540 + 504 534 227920 30 chain 25194 chr2 243199373 + 152064221 152064513 AluY 311 + 9 300 103768 124 1 0 167 chain 22766 chr2 243199373 + 152066045 152066324 AluSp 311 + 11 292 116745 175 0 2 104 chain 25015 chr2 243199373 + 152066415 152066708 L1PA6 6164 - 8 302 104710 164 0 1 129 chain 22227 chr2 243199373 + 152073586 152073872 MER50 708 - 14 299 119221 213 1 0 72 chain 44378 chr2 243199373 + 152101175 152101709 MER41A 554 - 0 541 63717 148 3 11 4 1 0 378 chain 59420 chr2 243199373 + 152101925 152102662 MER4E 760 - 10 760 53159 306 1 0 81 0 2 79 0 1 109 6 0 6 1 0 9 4 20 10 0 1 108 0 1 17 chain 7137 chr2 243199373 + 152103052 152103157 LTR72B 493 + 0 103 176498 28 11 9 66 chain 12773 chr2 243199373 + 152121028 152121175 LTR3B 427 + 8 155 149163 147 chain 21714 chr2 243199373 + 152137362 152137651 AluSg7 307 - 14 307 121334 13 9 10 109 0 1 33 2 4 123 chain 4688 chr2 243199373 + 152140762 152140819 Charlie4a 502 + 363 420 198662 57 chain 115037 chr2 243199373 + 152152340 152153892 LTR12C 1709 + 0 1708 32779 98 11 10 85 0 1 78 12 22 44 0 43 83 5 4 59 0 1 92 0 13 86 0 118 246 0 4 21 1 0 8 4 2 85 26 7 14 11 4 13 3 1 370 14 13 83 chain 24989 chr2 243199373 + 152165581 152165982 LTR7B 505 + 0 491 104864 89 0 3 14 0 11 44 55 132 69 1 0 36 0 1 42 14 13 37 chain 256230 chr2 243199373 + 152166071 152169603 HERVH-int 3825 + 78 3825 15922 255 1 0 62 26 25 24 91 322 15 2 0 6 3 8 376 1 4 44 6 0 4 7 0 86 0 2 112 1 0 8 9 0 133 11 6 209 0 1 56 0 7 122 8 14 318 0 1 90 24 23 19 4 7 6 3 0 300 0 1 56 11 0 216 1 0 76 0 3 148 32 31 17 6 7 527 chain 28248 chr2 243199373 + 152171312 152171725 LTR7B 505 + 0 491 92120 89 0 3 14 0 11 58 15 77 26 0 2 85 1 0 33 0 1 10 1 2 30 14 13 37 chain 416483 chr2 243199373 + 152172579 152178943 L1PB1 5432 + 12 5422 9626 7 1 0 231 2 4 300 629 0 58 0 1 4 1 0 272 0 4 335 0 2 124 16 17 32 26 34 269 0 2 236 5 10 542 5 0 330 2 1 13 6 7 211 0 1 233 2 1 344 0 2 63 19 24 6 2 0 172 4 0 57 5 6 252 4 8 134 314 0 200 3 1 107 1 0 136 0 1 297 1 0 12 1 0 23 1 0 9 1 0 6 10 6 8 2 0 50 21 19 45 1 0 11 9 6 11 9 0 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 8264 chr2 243199373 + 152183931 152184079 L1PA8 5853 + 5722 5853 169598 18 2 1 19 2 1 47 16 1 44 chain 71692 chr2 243199373 + 152197473 152198541 L1PB1 5432 - 12 1040 47608 16 1 0 13 1 0 21 1 0 22 2 0 16 46 32 4 1 0 16 10 9 32 9 8 10 2 1 51 2 0 9 18 13 9 1 0 24 3 0 11 1 0 5 1 0 283 4 3 191 3 0 229 chain 8984 chr2 243199373 + 152215835 152216291 MER30 238 - 3 237 165694 56 317 80 60 3 0 6 1 19 13 chain 20340 chr2 243199373 + 152235338 152235622 AluSx 319 + 9 287 126104 30 0 1 4 1 0 89 12 10 125 5 1 18 chain 3310 chr2 243199373 + 152242433 152242477 MLT1D 503 + 441 485 218771 44 chain 26284 chr2 243199373 + 152242983 152243287 AluY 311 + 6 311 98885 120 0 1 184 chain 23761 chr2 243199373 + 152264371 152264676 AluSx3 311 + 3 311 111704 104 1 2 13 0 1 9 0 1 178 chain 14378 chr2 243199373 + 152274033 152276476 MER2 342 + 22 342 143271 26 25 34 30 2 0 134 2165 19 12 8 24 41 chain 72772 chr2 243199373 + 152328699 152329531 L1P1 4361 - 33 863 47136 23 1 0 157 1 0 650 chain 4555 chr2 243199373 + 152358595 152358648 L1PB1 5432 + 5167 5220 200164 53 chain 10079 chr2 243199373 + 152358650 152358850 L1PB1 5432 + 5221 5404 160183 16 1 0 44 1 0 15 24 12 5 1 0 14 8 5 14 2 0 27 1 0 18 0 4 9 chain 47507 chr2 243199373 + 152366044 152366977 PABL_A 660 - 0 660 60840 78 300 0 87 0 4 249 15 14 124 11 20 45 0 15 24 chain 12305 chr2 243199373 + 152411215 152411413 Tigger3a 397 + 139 373 150996 9 0 10 107 0 30 38 25 21 19 chain 280020 chr2 243199373 + 152413090 152416456 L1PA7 6471 + 2671 6462 14642 201 12 13 37 0 1 13 0 344 217 1 0 1164 5 9 287 0 66 424 5 15 159 1 0 517 0 1 323 chain 17263 chr2 243199373 + 152470139 152470457 MSTA 426 + 31 405 134885 60 20 57 58 4 0 10 2 0 6 1 8 6 3 0 60 33 54 55 chain 22410 chr2 243199373 + 152498333 152498595 L1PA5 6144 - 4 266 118439 262 chain 3886 chr2 243199373 + 152538511 152538561 MADE1 96 + 45 96 209076 24 0 1 26 chain 557729 chr2 243199373 + 152555382 152561403 L1PA2 6032 - 0 6031 531 156 0 7 3678 1 0 218 0 8 1906 4 0 58 chain 5943 chr2 243199373 + 152593063 152593134 MLT1A0 366 + 93 164 185760 71 chain 4957 chr2 243199373 + 152596904 152596984 L1MC3 1789 - 380 455 195605 23 4 0 7 1 0 45 chain 529211 chr2 243199373 + 152599881 152606006 L1PA5 6144 + 0 6144 4275 127 1 15 14 0 12 1002 9 0 64 0 1 1078 2 1 1091 7 8 89 0 1 960 0 1 831 1 0 849 chain 29259 chr2 243199373 + 152617296 152617603 AluYa5 310 - 3 310 87742 307 chain 4035 chr2 243199373 + 152634687 152634731 LTR8 732 - 40 84 206843 44 chain 81131 chr2 243199373 + 152634800 152635760 L1PA7 6471 + 5504 6470 43118 117 0 3 30 0 4 313 6 1 29 0 2 320 0 1 134 0 1 11 chain 28020 chr2 243199373 + 152636977 152637268 AluYd8 298 + 0 291 92932 291 chain 8057 chr2 243199373 + 152640648 152640792 MER44A 345 - 84 240 170714 14 1 0 10 0 1 58 3 13 13 14 16 31 chain 10708 chr2 243199373 + 152686758 152686934 MER30 238 - 0 189 157383 29 9 9 68 13 27 6 1 0 50 chain 87810 chr2 243199373 + 152731534 152732551 SVA_D 2077 - 6 1227 40445 130 0 20 489 0 49 61 0 1 89 48 0 172 0 182 28 chain 4350 chr2 243199373 + 152732303 152732351 SVA_D 2077 - 669 718 102382 19 0 1 29 chain 3352 chr2 243199373 + 152745387 152745601 MER3 215 + 0 206 218007 22 2 0 13 29 140 12 117 0 19 chain 461075 chr2 243199373 + 152765984 152772072 L1PA8A 6298 - 7 6043 8361 101 7 0 6 1 8 8 0 1 15 9 3 44 5 7 16 0 1 41 0 15 69 1 0 109 0 5 6 3 0 4 0 23 263 0 2 40 5 13 147 7 77 260 7 12 170 1 0 223 4 0 56 0 2 383 0 127 339 0 4 14 1 5 116 2 0 45 0 1 70 3 0 15 0 4 7 0 1 58 4 5 413 0 2 184 4 1 249 0 1 46 6 7 55 0 2 357 0 4 5 313 0 52 5 6 339 0 5 156 0 2 239 0 1 104 2 0 74 0 1 272 0 1 213 20 22 102 4 2 7 1 0 18 2 0 12 5 6 60 7 1 20 2 0 44 1 0 10 chain 81120 chr2 243199373 + 152798731 152799808 MER11A 1151 + 0 1151 43128 55 0 99 22 8 0 118 4 0 149 0 1 94 0 1 145 5 6 124 0 26 22 43 0 58 0 1 46 1 0 16 0 1 167 chain 32565 chr2 243199373 + 152886981 152887354 L1PA5 6144 - 6 391 79915 140 4 16 229 chain 28471 chr2 243199373 + 152910599 152910903 AluYg6 310 + 0 304 91304 304 chain 78398 chr2 243199373 + 152922813 152923668 L1PA3long 6157 + 5302 6156 44322 850 1 0 4 chain 12165 chr2 243199373 + 152944195 152944404 AluJo 314 + 86 293 151552 40 21 22 5 0 3 36 17 11 90 chain 3236 chr2 243199373 + 152972818 152972906 MLT1C 463 - 317 389 220311 6 1 0 18 37 22 26 chain 46912 chr2 243199373 + 152983084 152983756 MER51A 677 + 0 644 61298 43 2 0 39 4 0 59 1 0 29 42 24 20 0 5 364 8 0 61 chain 10644 chr2 243199373 + 152999060 152999221 MER47A 366 + 46 223 157632 17 15 32 8 0 1 70 2 0 49 chain 17255 chr2 243199373 + 153010918 153011131 AluJb 308 + 71 282 134911 62 2 0 149 chain 4249 chr2 243199373 + 153014114 153014165 MLT1B 390 + 284 335 203886 51 chain 158580 chr2 243199373 + 153016222 153018026 SVA_D 2077 + 14 2077 23522 674 0 40 189 1 0 21 0 38 16 13 66 28 0 2 15 0 78 129 0 49 718 chain 74854 chr2 243199373 + 153019663 153020768 MER11A 1151 + 0 1151 46088 22 4 0 57 7 15 136 0 4 55 14 11 16 34 0 72 0 1 54 0 1 115 1 0 123 6 9 12 1 2 38 0 4 87 10 68 96 33 37 52 1 0 20 0 4 35 0 1 4 chain 41649 chr2 243199373 + 153034211 153034683 MER9a2 513 + 41 513 67091 472 chain 169701 chr2 243199373 + 153034683 153036790 HERVK9-int 4720 - 865 4529 22088 216 5 0 113 0 1 143 3 0 42 51 689 27 6 8 196 0 924 429 0 3 80 4 1 792 chain 44321 chr2 243199373 + 153037449 153037960 MER9a2 513 - 0 513 63804 97 0 1 401 0 1 13 chain 42026 chr2 243199373 + 153041359 153041879 LTR10G 522 - 3 522 66591 70 4 1 95 0 1 183 0 1 168 chain 399796 chr2 243199373 + 153049920 153054944 L1PA7 6471 + 1711 6466 10102 109 1 22 307 300 0 145 0 1 218 6 8 78 0 1 31 2 3 239 0 1 134 0 3 85 0 4 133 0 4 247 6 2 1188 0 2 646 13 0 9 0 13 277 1 0 83 5 0 39 0 1 246 0 3 466 3 0 7 chain 42538 chr2 243199373 + 153058990 153059522 LTR10F 562 + 0 562 65973 111 0 28 89 0 3 25 7 0 10 5 11 285 chain 9770 chr2 243199373 + 153066635 153066747 L1MB8 1703 - 115 227 161744 112 chain 22227 chr2 243199373 + 153068197 153068457 AluSp 311 + 25 287 119218 54 0 2 206 chain 44287 chr2 243199373 + 153130149 153130655 MER9a1 513 - 8 513 63838 492 1 0 13 chain 316866 chr2 243199373 + 153130655 153134407 HERVK9-int 4720 - 0 3874 12731 174 0 28 80 0 96 3297 38 47 8 11 0 144 chain 45347 chr2 243199373 + 153135763 153136276 MER9a1 513 - 0 513 62660 513 chain 41342 chr2 243199373 + 153160294 153160876 MER41B 635 + 14 601 67480 114 1 2 331 0 7 6 24 16 59 12 17 35 chain 107891 chr2 243199373 + 153169428 153171046 L1MA2 4263 - 151 1724 34758 7 1 0 36 23 11 93 11 9 35 0 1 6 1 0 41 3 4 60 3 0 29 13 14 104 5 4 10 8 3 60 4 1 332 2 0 5 0 2 79 1 0 18 9 10 219 10 11 148 0 1 154 32 6 42 0 4 14 chain 11107 chr2 243199373 + 153195654 153195819 MER30 238 + 58 235 155780 45 9 26 10 1 0 60 3 0 3 1 0 33 chain 29542 chr2 243199373 + 153205332 153205648 AluYb9 318 - 3 318 86445 197 1 0 118 chain 55787 chr2 243199373 + 153207717 153208475 L1PA8 5853 - 0 760 55252 62 3 8 22 2 1 19 8 7 33 25 24 66 8 6 43 2 1 221 0 1 160 8 10 76 chain 36683 chr2 243199373 + 153214380 153214881 MLT2A2 560 + 0 496 73980 204 17 9 14 9 0 172 3 14 76 0 1 6 chain 11409 chr2 243199373 + 153219376 153219661 L1MB8 1703 + 1435 1659 154650 27 28 31 95 75 17 21 6 0 33 chain 20392 chr2 243199373 + 153222740 153222963 L1PA4 6152 + 5929 6152 125918 223 chain 20416 chr2 243199373 + 153378984 153379330 THE1B 368 + 0 366 125850 44 14 29 93 8 6 24 3 0 6 28 41 48 3 0 75 chain 21457 chr2 243199373 + 153397132 153397361 L1PA2 6032 + 5796 6025 122305 229 chain 5479 chr2 243199373 + 153490590 153490658 HSMAR1 1287 - 1 69 190226 68 chain 33910 chr2 243199373 + 153595798 153596230 THE1B-int 1605 - 1176 1605 77757 173 3 0 256 chain 79071 chr2 243199373 + 153611386 153612397 LTR13 1007 + 0 1007 44020 73 2 0 191 10 11 122 0 1 182 4 0 48 2 1 51 1 0 14 0 3 278 2 1 31 chain 17742 chr2 243199373 + 153618072 153618388 Tigger3a 397 + 0 373 133588 18 87 142 157 0 2 54 chain 37622 chr2 243199373 + 153619734 153620239 MLT2A2 560 - 0 526 72659 8 0 4 116 0 3 96 0 11 112 3 0 7 6 12 157 chain 83183 chr2 243199373 + 153625591 153626586 LTR5B 1012 - 0 1012 42259 8 0 2 227 4 3 608 2 4 9 0 14 137 chain 14844 chr2 243199373 + 153634570 153634738 L1PA4 6152 + 5975 6143 141797 168 chain 10777 chr2 243199373 + 153635697 153635862 MLT2C1 407 - 179 351 157087 13 1 0 15 7 16 70 2 1 57 chain 2761 chr2 243199373 + 153637143 153637177 L1MA9 1812 - 102 135 229310 4 1 0 29 chain 50702 chr2 243199373 + 153649756 153650379 PABL_A 660 + 6 660 58503 143 0 11 111 1 0 162 1 22 205 chain 6050 chr2 243199373 + 153661133 153661239 LTR12C 1709 - 832 937 184811 20 21 20 65 chain 10981 chr2 243199373 + 153676880 153677027 MLT1A 405 - 258 405 156267 16 0 1 103 2 1 26 chain 4403 chr2 243199373 + 153678898 153678949 MLT1A0 366 - 143 195 201897 4 0 1 47 chain 46871 chr2 243199373 + 153694357 153694945 L1PA7 6471 + 5843 6452 61334 116 0 1 172 0 1 71 0 1 28 0 4 45 11 16 126 0 9 19 chain 42538 chr2 243199373 + 153695693 153696363 L1PB3 3668 - 87 733 65972 12 7 3 37 3 1 25 1 0 3 1 0 15 22 7 87 4 3 97 1 0 38 7 9 63 0 1 4 1 0 42 1 0 58 0 1 71 3 0 17 4 6 46 chain 25877 chr2 243199373 + 153741716 153742025 AluYk4 311 - 6 311 100541 7 4 0 298 chain 12696 chr2 243199373 + 153743239 153743385 L1PA3long 6157 + 6009 6155 149462 146 chain 30761 chr2 243199373 + 153746141 153746486 L1PA4 6152 - 9 355 82938 139 0 1 206 chain 529592 chr2 243199373 + 153752100 153758551 L1PA7 6471 + 6 6456 4236 391 5 8 648 2 3 153 0 1 286 0 1 247 0 1 207 3 0 7 0 5 173 1 0 23 0 4 473 1 0 209 0 3 36 1 5 92 0 1 463 2 1 31 10 8 183 0 5 257 2 1 810 5 1 86 1 2 63 0 1 240 0 1 171 0 1 313 0 3 74 0 2 165 21 8 10 0 12 463 27 2 96 chain 49034 chr2 243199373 + 153768775 153769495 L1PA15 4387 + 3644 4352 59725 168 1 8 10 3 0 51 0 3 48 1 0 172 1 0 26 1 0 54 2 1 17 4 0 15 1 0 50 6 3 44 3 1 14 5 0 23 chain 70612 chr2 243199373 + 153794173 153795601 L1MA1 4479 - 534 1583 48109 64 4 6 16 1 0 6 1 0 6 2 12 9 1 0 71 1 0 16 2 0 25 1 0 40 0 4 119 9 4 9 0 4 21 1 0 124 4 0 83 1 0 10 1 0 33 16 14 71 4 0 21 9 7 67 0 1 87 370 0 10 2 0 27 1 0 62 chain 12645 chr2 243199373 + 153795857 153796136 L1PA14 3548 + 3222 3484 149659 84 1 0 26 78 70 13 2 1 42 6 0 7 1 0 19 chain 24201 chr2 243199373 + 153805309 153805641 MER1B 344 - 14 344 109206 44 13 19 47 4 0 107 4 0 113 chain 10520 chr2 243199373 + 153819049 153819331 MER51A 677 - 351 677 158166 37 4 5 46 129 172 66 chain 8086 chr2 243199373 + 153837461 153837717 LTR56 451 - 177 446 170562 63 141 154 52 chain 518096 chr2 243199373 + 153852652 153858376 L1PA3long 6157 + 422 6157 5372 596 4 1 27 1 0 1344 0 4 794 0 1 2118 1 5 84 1 0 611 1 8 142 chain 565356 chr2 243199373 + 153864280 153870310 L1HS 6032 - 0 6030 192 6030 chain 110319 chr2 243199373 + 153874009 153875455 THE1B-int 1605 - 15 1490 34118 90 0 1 614 0 1 172 20 21 168 1 0 59 11 36 120 1 2 134 1 2 55 chain 4291 chr2 243199373 + 153899101 153899154 MSTD 398 + 345 398 203340 53 chain 104556 chr2 243199373 + 153900256 153901520 L1PA8A 6298 - 7 1270 35608 394 0 1 315 2 1 97 1 0 75 1 0 373 0 1 6 chain 37287 chr2 243199373 + 153913578 153914041 L1PBa 3878 - 1772 2235 73101 184 2 0 195 0 1 7 0 1 75 chain 3987 chr2 243199373 + 153915525 153915570 Tigger1 2417 + 2261 2306 207586 45 chain 89812 chr2 243199373 + 153948244 153949737 L1MA1 4479 - 348 1794 39718 24 2 0 27 6 5 118 0 1 4 4 0 8 1 0 85 1 0 9 6 4 20 1 0 71 1 0 16 2 0 23 2 1 36 0 1 82 1 0 5 0 1 14 0 2 54 2 0 131 3 0 126 4 0 8 9 8 72 4 0 66 1 0 32 67 49 43 2 0 27 1 0 14 8 11 68 0 1 7 6 0 47 13 12 20 29 33 60 chain 151397 chr2 243199373 + 153950852 153952549 L1PA5 6144 + 4433 6137 24411 1084 0 2 417 0 1 151 0 4 45 chain 19910 chr2 243199373 + 153961399 153961624 L1PA3long 6157 - 0 223 127444 15 3 0 73 0 1 134 chain 51740 chr2 243199373 + 153961642 153962245 L1P1 4361 + 3738 4341 57793 413 1 0 103 0 3 48 1 0 23 2 1 12 chain 28075 chr2 243199373 + 153975370 153975747 THE1C 375 + 0 375 92740 180 16 15 155 1 0 25 chain 27047 chr2 243199373 + 153984693 153985059 THE1B 368 - 0 368 96122 193 5 3 62 2 3 65 0 5 22 2 0 15 chain 14052 chr2 243199373 + 153985193 153985375 THE1B 368 - 2 191 144374 73 1 0 61 0 8 47 chain 12483 chr2 243199373 + 153985376 153985539 THE1B 368 - 191 368 150326 11 1 0 107 0 15 44 chain 83078 chr2 243199373 + 154006772 154007716 L1PA4 6152 - 786 1735 42298 72 1 0 189 0 1 463 0 5 219 chain 69483 chr2 243199373 + 154007716 154008505 L1PA4 6152 + 5362 6152 48582 117 0 1 672 chain 127494 chr2 243199373 + 154010975 154012751 L1PA13 3608 - 441 2231 28692 7 1 0 28 1 0 120 14 23 12 0 2 41 15 20 4 0 1 91 0 5 15 1 0 378 5 8 72 0 3 74 5 4 274 0 3 84 0 1 103 37 23 103 3 2 7 0 1 281 chain 11118 chr2 243199373 + 154023185 154023317 LTR57 402 - 231 363 155743 132 chain 252098 chr2 243199373 + 154039505 154043082 L1PA11 4918 - 289 3852 16124 18 120 94 12 4 0 17 1 0 14 2 0 47 13 14 6 4 0 10 7 6 56 0 4 6 6 4 100 0 3 198 0 1 247 2 0 76 1 0 10 0 1 24 1 0 142 0 1 236 7 8 162 0 5 122 2 0 72 0 1 11 0 4 183 0 1 76 0 1 273 0 4 102 13 15 18 13 11 15 2 3 350 7 6 24 3 0 321 0 1 82 1 0 12 0 1 49 0 4 217 4 4 29 0 2 27 chain 44341 chr2 243199373 + 154049633 154050115 L1PA2 6032 + 5539 6024 63770 205 0 3 277 chain 26913 chr2 243199373 + 154058483 154058766 AluYb8 318 - 4 287 96584 283 chain 11082 chr2 243199373 + 154080676 154080829 L1PA16 3655 + 3438 3588 155882 140 3 0 10 chain 39171 chr2 243199373 + 154091765 154092319 LTR43B 570 - 16 570 70507 239 6 0 6 41 47 262 chain 11663 chr2 243199373 + 154096785 154096928 LTR8 732 + 589 732 153629 143 chain 425856 chr2 243199373 + 154101468 154107556 L1PA8 5853 + 50 5853 9399 22 2 0 10 1 0 13 43 13 92 25 11 11 0 11 69 12 0 57 0 1 249 0 1 28 3 0 6 23 17 485 0 3 5 4 2 306 0 1 204 0 1 418 8 11 36 0 3 17 0 1 34 0 4 374 16 15 8 0 8 33 10 74 31 18 20 215 0 2 19 0 1 653 331 11 45 0 3 352 0 4 143 6 5 7 0 1 518 1 0 47 15 6 222 0 2 70 0 1 98 1 2 72 0 1 284 3 4 21 1 0 45 2 0 9 1 5 56 1 0 9 2 1 51 2 1 19 4 3 90 chain 535667 chr2 243199373 + 154107987 154113987 L1PA3long 6157 - 1 6153 3495 1351 7 9 305 0 2 704 0 1 1728 8 11 1080 0 4 29 0 11 17 0 128 623 0 1 148 chain 44959 chr2 243199373 + 154114067 154114689 MER41-int 2638 + 1295 1935 63109 24 1 0 8 2 1 21 0 2 27 0 3 69 0 1 4 7 6 83 0 3 76 0 1 44 1 0 21 0 10 158 1 0 6 0 3 69 chain 84389 chr2 243199373 + 154118880 154119987 L1PA10 4194 + 3004 4112 41755 108 1 0 128 4 1 144 0 1 267 9 14 30 9 9 209 0 1 166 2 0 30 chain 193667 chr2 243199373 + 154127406 154129791 L1PA7 6471 + 4082 6459 19716 50 0 1 141 2 0 394 1 5 634 0 5 273 1 3 36 1 0 86 1 0 22 1 0 138 3 0 307 42 27 40 1 3 77 0 1 134 chain 505499 chr2 243199373 + 154179027 154185777 L1PA7 6471 - 10 6471 6494 162 4 5 124 7 10 320 0 1 139 0 2 29 0 2 40 0 4 278 1 2 394 1 0 118 3 0 76 1 0 258 0 1 93 1 0 13 10 23 352 0 1 178 20 0 22 4 7 67 0 1 132 0 1 724 0 20 215 14 6 93 19 20 318 0 1 55 316 0 305 0 9 42 6 5 4 0 1 499 0 2 62 17 9 22 0 1 476 23 21 467 1 2 53 32 34 140 chain 32440 chr2 243199373 + 154187906 154188334 MLT2A1 477 - 0 477 80128 42 4 0 11 0 50 184 3 1 15 1 5 26 0 1 142 chain 3044 chr2 243199373 + 154190229 154190263 ORSL-2b 485 + 316 350 224134 34 chain 28219 chr2 243199373 + 154191382 154191735 THE1A 353 + 0 353 92237 110 1 0 203 4 5 35 chain 121268 chr2 243199373 + 154191735 154193302 THE1A-int 1579 + 0 1579 30613 99 12 13 55 16 17 137 0 10 99 1 0 5 0 1 154 8 9 939 2 1 40 chain 12188 chr2 243199373 + 154193302 154193501 THE1A 353 + 0 202 151461 100 38 41 61 chain 11193 chr2 243199373 + 154193511 154193651 THE1A 353 + 214 353 155447 127 3 2 10 chain 6044 chr2 243199373 + 154200919 154200992 L1MC4 1079 - 328 401 184857 73 chain 386981 chr2 243199373 + 154217807 154222919 L1PA8 5853 + 765 5853 10549 116 14 10 242 2 0 5 0 1 218 0 3 278 4 5 123 8 0 113 0 1 72 9 11 17 5 4 42 14 0 63 0 3 89 5 1 27 1 7 72 0 2 310 0 1 117 1 0 303 0 1 4 1 0 194 3 0 456 0 1 185 25 28 432 7 0 47 0 1 367 1 2 194 2 0 77 3 1 218 0 2 74 0 1 258 1 0 32 1 0 12 2 0 68 26 26 38 6 5 15 1 0 41 0 1 51 chain 17448 chr2 243199373 + 154238871 154239115 L1PA16 3655 - 84 330 134383 58 0 3 147 15 14 24 chain 20806 chr2 243199373 + 154241559 154241914 L1MA2 4263 + 3771 4114 124578 38 4 1 145 39 38 59 23 16 37 1 0 9 chain 44182 chr2 243199373 + 154246451 154246981 L1PA7 6471 + 5936 6470 63966 518 0 4 12 chain 550530 chr2 243199373 + 154254435 154260466 L1PA2 6032 - 0 6029 1371 3954 1 0 1822 1 0 253 chain 29463 chr2 243199373 + 154268339 154268748 MLT2A1 477 + 0 477 86786 141 3 4 23 0 4 100 4 0 52 1 0 27 9 77 49 chain 542884 chr2 243199373 + 154290345 154296472 L1PA4 6152 - 1 6143 2358 759 0 2 89 1 0 512 0 2 158 1 0 341 0 2 1032 0 3 1212 0 1 781 0 1 104 0 5 399 0 1 738 chain 214140 chr2 243199373 + 154296505 154299130 L1PA7 6471 - 37 2678 18219 29 0 1 50 0 1 44 1 2 674 10 6 11 8 14 59 1 0 5 0 2 787 0 1 341 0 1 307 0 1 274 0 7 24 chain 26342 chr2 243199373 + 154329393 154329712 L1PA7 6471 + 6155 6470 98643 241 3 0 56 1 0 18 chain 80191 chr2 243199373 + 154358623 154359949 L1PB1 5432 - 10 1324 43512 4 1 0 14 1 0 13 1 0 21 15 14 10 2 0 14 9 6 20 26 15 10 1 0 45 6 5 9 3 2 41 44 37 4 1 0 15 4 1 8 1 0 9 1 2 216 0 3 69 2 10 11 8 0 25 1 0 64 0 2 60 0 4 9 0 1 5 3 0 130 0 3 100 8 7 4 0 1 80 8 7 28 0 1 92 0 14 30 1 0 19 chain 36575 chr2 243199373 + 154391048 154391462 LTR7 482 - 36 482 74130 88 0 1 62 0 31 264 chain 24821 chr2 243199373 + 154394498 154394819 THE1C-int 1605 + 45 429 105769 67 0 9 22 5 59 227 chain 134525 chr2 243199373 + 154394904 154396361 L1PA2 6032 - 1 1458 27105 1457 chain 22174 chr2 243199373 + 154410576 154410863 AluY 311 + 29 299 119473 97 10 0 57 7 0 116 chain 4905 chr2 243199373 + 154422072 154422250 MER6B 211 + 30 210 196228 19 106 108 53 chain 3636 chr2 243199373 + 154425556 154425601 L1ME3A 1206 - 262 307 213038 45 chain 22492 chr2 243199373 + 154443886 154444219 THE1B 368 - 23 368 118059 153 2 0 11 19 18 88 16 31 44 chain 88277 chr2 243199373 + 154444219 154445393 THE1B-int 1605 - 0 1242 40269 371 5 6 331 0 1 104 13 14 43 6 37 59 8 17 165 0 25 69 chain 16220 chr2 243199373 + 154446046 154446334 THE1B 368 - 2 286 137694 96 6 5 56 61 58 69 chain 3085 chr2 243199373 + 154446338 154446411 THE1B 368 - 291 368 223185 9 24 28 40 chain 4562 chr2 243199373 + 154463054 154463113 MER30 238 + 182 238 200085 8 3 0 48 chain 31233 chr2 243199373 + 154468215 154468658 L1PA8 5853 - 0 436 82105 90 7 6 16 7 6 35 7 0 7 11 16 62 7 5 46 1 0 147 chain 16201 chr2 243199373 + 154470170 154470348 L1PA5 6144 - 181 359 137748 178 chain 14826 chr2 243199373 + 154470348 154470537 L1PA5 6144 + 5956 6142 141854 38 4 5 136 4 0 7 chain 129909 chr2 243199373 + 154484278 154485723 L1PA3long 6157 - 1414 2865 28104 250 0 2 133 0 4 1062 chain 128800 chr2 243199373 + 154485742 154487171 L1PA3long 6157 + 4727 6157 28362 405 0 1 1024 chain 97691 chr2 243199373 + 154487326 154488457 L1PA5 6144 - 0 1131 37371 52 0 1 790 0 4 269 5 0 15 chain 378263 chr2 243199373 + 154502984 154507265 L1PA5 6144 - 7 4293 10809 252 1 0 591 1 0 1046 0 1 541 0 1 202 0 1 854 0 1 716 0 2 43 0 1 34 chain 493508 chr2 243199373 + 154526071 154532207 L1PA6 6164 + 0 6156 7200 115 0 8 261 30 28 37 19 0 13 0 1 6 6 5 93 1 0 228 1 18 642 0 2 868 0 1 839 5 2 31 0 1 14 10 4 21 0 4 790 2 4 183 0 1 56 0 3 89 0 2 520 0 1 105 0 1 85 6 0 8 0 6 222 0 4 45 0 1 465 0 1 12 0 1 212 0 1 96 chain 99466 chr2 243199373 + 154542548 154544038 L1PA13 3608 - 130 1607 36912 10 1 0 20 9 5 47 2 0 5 2 0 27 4 2 27 1 0 60 3 1 114 1 0 32 1 0 55 10 16 323 16 17 8 1 0 162 0 1 45 3 0 5 6 9 28 13 12 31 7 4 14 0 2 178 0 1 67 2 1 55 7 4 23 5 6 60 chain 44452 chr2 243199373 + 154552480 154553026 MLT2A2 560 - 2 560 63633 145 0 11 195 0 1 206 chain 330893 chr2 243199373 + 154554439 154558968 L1PA8A 6298 + 2005 6291 12169 123 0 1 342 2 0 37 7 12 137 0 1 97 0 4 98 0 1 156 252 0 391 2 0 180 0 1 291 5 3 271 0 3 671 3 0 22 0 1 436 10 11 126 0 8 43 6 10 6 1 0 57 22 25 463 16 1 142 16 17 98 chain 23547 chr2 243199373 + 154563401 154563748 THE1B 368 + 3 368 112870 41 6 21 40 10 16 48 1 0 20 5 3 78 0 1 22 1 0 75 chain 553666 chr2 243199373 + 154575960 154581977 L1PA2 6032 + 0 6027 988 2050 0 1 213 0 4 873 0 4 430 0 1 2451 chain 52662 chr2 243199373 + 154584255 154584936 L1PA8 5853 - 0 676 57207 93 1 0 55 30 29 68 2 0 44 1 0 387 chain 3252 chr2 243199373 + 154620374 154620412 THE1B-int 1605 + 117 156 219982 28 0 1 10 chain 19132 chr2 243199373 + 154620466 154620757 THE1B-int 1605 + 96 393 129740 155 49 55 87 chain 5706 chr2 243199373 + 154629318 154629389 L1M3b 1512 - 973 1045 188048 67 0 1 4 chain 4759 chr2 243199373 + 154638580 154638641 MLT1B 390 + 21 82 197819 61 chain 33758 chr2 243199373 + 154640487 154640945 THE1C-int 1605 + 15 464 78007 33 0 1 4 16 1 116 4 1 117 0 1 156 0 7 12 chain 26251 chr2 243199373 + 154685796 154686143 THE1B 368 - 25 367 99017 143 4 0 24 5 4 171 chain 80329 chr2 243199373 + 154693023 154693921 L1PA3long 6157 - 0 899 43460 147 0 1 751 chain 18213 chr2 243199373 + 154720904 154721109 L1PA2 6032 - 1729 1936 132303 8 0 2 197 chain 2948 chr2 243199373 + 154721109 154721140 L1PA2 6032 + 4301 4332 222204 31 chain 157539 chr2 243199373 + 154721140 154722837 L1PA2 6032 + 4335 6032 23653 1697 chain 31959 chr2 243199373 + 154728457 154728928 LTR12D 1347 + 3 403 80921 303 98 27 70 chain 17309 chr2 243199373 + 154742928 154743122 L1PA4 6152 + 5769 5963 134760 194 chain 90586 chr2 243199373 + 154762760 154763750 L1PA4 6152 - 1 991 39437 990 chain 43452 chr2 243199373 + 154780055 154780542 L1PA5 6144 - 0 487 64868 487 chain 93627 chr2 243199373 + 154781165 154782574 L1PA11 4918 - 351 1743 38466 13 1 0 15 13 9 10 21 12 20 1 0 8 7 5 81 2 1 67 2 1 117 0 1 71 28 29 59 13 14 255 53 49 204 1 0 135 5 9 207 chain 27848 chr2 243199373 + 154834919 154835271 THE1A 353 + 0 351 93530 84 0 1 24 2 1 88 1 0 153 chain 37459 chr2 243199373 + 154837731 154838178 L1PA5 6144 - 4 446 72877 30 8 4 221 1 0 187 chain 85761 chr2 243199373 + 154850428 154851446 L1PA5 6144 - 2 1014 41241 7 4 0 140 0 5 8 5 0 91 1 0 596 1 0 165 chain 101914 chr2 243199373 + 154854171 154855414 L1PA7 6471 - 14 1262 36282 659 1 2 162 8 7 6 1 0 143 0 5 175 0 1 10 1 0 6 0 1 71 chain 30454 chr2 243199373 + 154855415 154855773 L1PA7 6471 + 4811 5170 83526 92 0 1 266 chain 493197 chr2 243199373 + 154876224 154881829 L1PA4 6152 - 9 6152 7216 376 11 13 1875 1 0 434 0 1 4 0 8 65 6 5 578 0 4 325 5 3 915 1 0 92 0 4 197 1 0 621 0 525 98 chain 29776 chr2 243199373 + 154907789 154908102 AluYb8 318 - 5 318 85560 313 chain 5133 chr2 243199373 + 154959053 154959143 L1PB1 5432 + 5308 5393 193748 11 10 8 5 1 0 12 1 0 26 1 0 23 chain 4649 chr2 243199373 + 154963358 154963517 MSTB1 431 + 5 171 199069 14 4 10 28 52 54 17 14 13 30 chain 31834 chr2 243199373 + 154966756 154967308 MLT2A1 477 - 5 477 81116 35 136 54 211 1 3 169 chain 443892 chr2 243199373 + 154967308 154973363 HERVL-int 5654 - 0 5654 8929 102 3 11 148 0 6 489 3 6 729 5 0 958 0 1 125 9 11 209 0 2 183 0 2 743 0 1 14 7 34 395 11 12 345 459 5 279 23 25 508 0 1 23 5 7 280 chain 8096 chr2 243199373 + 154971833 154971933 L1PA4 6152 - 16 337 170510 88 0 221 12 chain 29879 chr2 243199373 + 154973363 154973797 MLT2A1 477 - 0 464 85170 43 17 49 216 5 2 35 9 10 109 chain 12377 chr2 243199373 + 154973815 154974141 L1PB1 5432 - 21 318 150723 7 1 0 13 1 0 21 1 0 21 75 58 10 1 0 44 1 0 16 2 1 41 0 2 7 35 28 4 1 0 24 chain 551722 chr2 243199373 + 155004433 155010589 L1PA3long 6157 - 0 6151 1218 150 7 0 696 1 0 665 0 1 981 1 0 2871 0 3 784 chain 8785 chr2 243199373 + 155015263 155015374 MER85 139 - 5 125 166742 24 1 0 5 0 10 81 chain 23505 chr2 243199373 + 155019493 155019769 L1PA4 6152 - 0 273 113102 7 3 0 266 chain 21589 chr2 243199373 + 155019769 155020005 L1P1 4361 + 3143 3379 121808 236 chain 63987 chr2 243199373 + 155022923 155023637 L1PA5 6144 + 5417 6131 51011 714 chain 18493 chr2 243199373 + 155034865 155035085 L1PA4 6152 + 5927 6152 131520 81 0 1 66 0 1 4 2 0 61 0 5 6 chain 4858 chr2 243199373 + 155045394 155045464 MADE1 96 + 1 96 196693 17 1 26 52 chain 13724 chr2 243199373 + 155051384 155051602 L1PA8 5853 - 0 213 145529 93 1 0 19 2 1 37 1 0 5 23 21 37 chain 11495 chr2 243199373 + 155067680 155067852 Tigger3a 397 - 71 258 154316 21 2 14 102 7 11 35 1 0 4 chain 31861 chr2 243199373 + 155083853 155084216 L1PA4 6152 - 9 372 81080 363 chain 38225 chr2 243199373 + 155084304 155084797 MER75 514 + 24 513 71811 258 9 8 207 4 1 15 chain 5792 chr2 243199373 + 155088241 155088321 MADE1 96 + 0 96 187241 42 1 17 37 chain 3653 chr2 243199373 + 155094591 155094631 MER5A1 166 + 86 126 212769 40 chain 29902 chr2 243199373 + 155097014 155097483 LTR1 825 - 0 477 85085 92 13 10 44 23 46 66 15 4 127 1 0 27 0 3 29 1 0 6 2 0 23 chain 22728 chr2 243199373 + 155133183 155133555 THE1C 375 + 0 375 116937 62 0 5 5 2 0 42 13 30 9 19 0 40 18 21 136 1 0 25 chain 80387 chr2 243199373 + 155147181 155148372 LTR12D 1347 - 0 1346 43436 187 0 1 51 19 93 202 0 3 91 10 68 71 42 0 13 0 31 18 1 0 185 1 37 14 19 19 38 21 22 144 6 0 58 chain 2906 chr2 243199373 + 155147812 155147845 LTR12D 1347 - 689 722 219804 33 chain 8920 chr2 243199373 + 155153286 155153394 L1PA7 6471 - 1 110 166028 25 0 1 83 chain 21511 chr2 243199373 + 155162678 155162936 L1PA7 6471 - 13 272 122098 149 1 2 108 chain 78170 chr2 243199373 + 155167782 155168829 MER11C 1089 - 26 1089 44429 25 0 1 117 1 0 56 0 1 118 1 2 5 0 1 35 1 0 7 1 5 112 16 15 137 1 0 40 1 0 65 0 4 54 7 16 247 chain 39126 chr2 243199373 + 155206653 155207203 MLT2A2 560 + 0 560 70566 155 1 0 244 3 14 50 0 8 7 8 0 28 4 0 6 1 5 43 chain 3858 chr2 243199373 + 155253134 155253181 Charlie1b 519 - 280 327 209477 47 chain 54949 chr2 243199373 + 155279425 155280077 L1PA6 6164 - 2 651 55742 6 4 0 134 1 0 4 1 2 113 0 1 389 chain 22179 chr2 243199373 + 155342728 155343060 THE1B 368 + 0 336 119442 12 7 8 149 1 0 29 0 3 9 0 4 11 19 17 61 1 0 33 chain 27483 chr2 243199373 + 155359809 155360163 THE1A 353 + 0 353 94706 109 4 3 241 chain 27921 chr2 243199373 + 155361733 155362087 THE1A 353 + 0 353 93275 109 2 1 243 chain 10224 chr2 243199373 + 155375626 155375765 L1PA8 5853 + 5716 5853 159492 24 2 1 19 1 0 93 chain 27213 chr2 243199373 + 155391522 155391958 MER51B 395 + 2 395 95551 163 56 0 78 6 10 75 1 10 57 chain 40321 chr2 243199373 + 155415505 155416007 L1P3 4156 - 261 757 68850 346 4 0 28 0 1 20 2 0 80 2 1 20 chain 16168 chr2 243199373 + 155416007 155416208 L1PA7 6471 + 6269 6467 137845 192 3 0 6 chain 4952 chr2 243199373 + 155433395 155433551 HERVS71-int 4705 - 4501 4634 195689 4 1 0 10 2 0 10 1 0 12 26 19 24 1 0 3 1 0 4 1 0 13 2 0 3 2 0 6 1 0 7 8 4 14 chain 40356 chr2 243199373 + 155434277 155434813 LTR6B 557 - 11 557 68797 11 0 1 29 24 26 68 8 10 33 3 9 312 1 0 47 chain 27335 chr2 243199373 + 155439162 155439559 LTR7 482 - 12 482 95160 103 1 2 56 0 2 12 1 32 9 1 0 18 11 12 109 7 46 69 chain 165240 chr2 243199373 + 155441695 155443701 HERVH-int 3825 - 259 2479 22619 199 37 247 44 23 24 876 0 1 343 0 1 52 0 1 432 chain 22982 chr2 243199373 + 155476369 155476630 AluY 311 + 18 278 115706 115 1 0 145 chain 34774 chr2 243199373 + 155527190 155527603 L1PA6 6164 - 4 415 76513 6 3 0 210 0 1 194 chain 88976 chr2 243199373 + 155582106 155583275 L1PB1 5432 + 3956 5114 40015 243 5 0 288 4 1 140 1 2 396 4 0 88 chain 11372 chr2 243199373 + 155613011 155613143 L1PA7 6471 - 128 260 154807 132 chain 11695 chr2 243199373 + 155613143 155613277 L1PA7 6471 + 6330 6464 153494 134 chain 226871 chr2 243199373 + 155623711 155626296 L1PA5 6144 - 12 2599 17490 321 1 0 473 0 1 915 0 1 700 3 4 172 chain 4633 chr2 243199373 + 155655230 155655381 L1MB1 2102 - 125 275 199264 35 2 0 24 74 75 16 chain 3694 chr2 243199373 + 155677095 155677169 MER101 471 - 0 70 212023 33 22 18 19 chain 17853 chr2 243199373 + 155685943 155686454 L1PA15 4387 - 31 519 133230 18 29 22 30 1 0 4 3 4 9 12 9 43 1 0 11 4 0 21 1 0 38 53 89 36 9 13 8 2 0 3 43 0 55 11 10 26 0 1 13 11 9 16 chain 514017 chr2 243199373 + 155695466 155701596 L1PA6 6164 - 5 6164 5775 336 9 21 324 0 1 169 1 0 79 1 0 313 4 0 13 0 1 270 0 4 214 0 2 40 1 3 54 1 0 491 0 2 308 0 1 109 4 1 72 1 0 161 4 0 326 0 1 518 0 1 78 0 3 195 1 2 791 4 0 431 0 17 67 2 3 170 1 0 48 0 2 279 0 2 69 12 8 159 chain 33466 chr2 243199373 + 155723740 155724236 LTR7 482 + 0 482 78466 10 0 2 104 48 0 108 0 1 29 0 29 6 0 1 129 13 14 49 chain 295335 chr2 243199373 + 155724238 155727866 HERVH-int 3825 + 0 3825 13681 333 1 0 202 1 0 6 1 0 4 0 1 24 1 0 9 2 1 12 15 5 16 6 5 13 3 0 14 14 11 27 2 0 14 1 0 24 29 8 35 0 2 12 0 3 445 15 0 167 0 1 291 4 31 298 1 11 276 0 1 282 1 0 4 0 1 481 9 11 39 0 210 78 19 20 397 chain 35044 chr2 243199373 + 155730623 155731072 LTR7 482 + 0 482 76124 224 0 1 29 1 0 4 0 32 129 13 14 49 chain 35163 chr2 243199373 + 155751613 155752067 L1PA8 5853 + 5407 5853 75967 155 1 0 48 2 0 69 1 0 12 9 8 45 1 0 12 1 0 4 2 1 92 chain 10676 chr2 243199373 + 155779036 155779195 L1PA8 5853 + 5696 5853 157501 40 9 8 16 2 1 92 chain 353108 chr2 243199373 + 155811162 155815047 L1PA2 6032 - 6 3897 11522 846 0 4 1520 0 1 552 0 1 967 chain 10206 chr2 243199373 + 155817322 155817448 Tigger1 2417 - 2219 2345 159600 126 chain 73813 chr2 243199373 + 155837079 155837901 L1PA3long 6157 - 1 822 46608 766 1 0 55 chain 44372 chr2 243199373 + 155843747 155844542 L1PA15 4387 + 3606 4365 63730 67 0 6 7 20 15 7 0 5 60 1 2 37 2 0 14 4 0 15 1 0 5 0 2 31 14 15 31 8 7 164 10 9 26 1 0 54 1 0 27 10 5 50 6 3 44 41 15 27 1 0 9 chain 107903 chr2 243199373 + 155845178 155846362 L1PA2 6032 - 0 1184 34754 1184 chain 49969 chr2 243199373 + 155846362 155846895 L1PA2 6032 + 4321 4854 58759 533 chain 33467 chr2 243199373 + 155850178 155850558 L1PA4 6152 + 5774 6151 78463 311 3 0 66 chain 29426 chr2 243199373 + 155891188 155891495 AluYb8 318 - 11 318 86960 307 chain 22069 chr2 243199373 + 155939127 155939389 L1PA6 6164 + 5899 6162 119925 42 0 1 220 chain 10247 chr2 243199373 + 155957645 155957882 L1M1 2793 + 806 1054 159384 16 35 49 15 19 16 79 13 15 7 1 0 13 1 0 38 chain 18674 chr2 243199373 + 155975342 155975581 L1P1 4361 + 4105 4341 131017 45 1 0 155 1 0 23 2 1 12 chain 23136 chr2 243199373 + 156004806 156005184 MLT2A2 560 - 58 560 114965 39 0 5 43 0 11 14 0 98 65 54 59 131 1 6 31 chain 89686 chr2 243199373 + 156014598 156015669 L1PA6 6164 + 5077 6151 39750 238 0 2 482 1 0 201 3 4 41 0 1 105 chain 32960 chr2 243199373 + 156028342 156028708 L1PA4 6152 - 2 368 79277 366 chain 42926 chr2 243199373 + 156030530 156031721 L1PB1 5432 - 5 746 65508 5 2 0 23 1 0 8 1 0 21 1 0 24 24 19 19 25 12 15 15 14 29 2 1 16 2 1 52 2 0 9 19 14 7 2 0 24 57 11 290 0 1 8 2 0 69 373 4 23 4 5 17 chain 107634 chr2 243199373 + 156047791 156048961 L1PA2 6032 - 13 1183 34818 1170 chain 22947 chr2 243199373 + 156054741 156054998 L1PA4 6152 + 5894 6151 115875 257 chain 25524 chr2 243199373 + 156082211 156082584 L1PA8 5853 - 0 364 102120 92 2 1 15 10 9 28 1 0 4 0 1 15 3 0 9 1 0 69 3 1 45 1 0 75 chain 43732 chr2 243199373 + 156082584 156083165 L1PA8 5853 + 4879 5464 64528 131 2 0 64 0 1 7 1 3 81 11 13 58 4 5 222 chain 66599 chr2 243199373 + 156084334 156085179 L1PA7 6471 - 7 866 49829 5 2 0 159 4 6 432 0 3 141 1 4 12 0 2 68 0 6 21 chain 21229 chr2 243199373 + 156087617 156087914 AluY 311 + 9 300 123108 35 9 13 219 16 6 18 chain 4095 chr2 243199373 + 156107516 156107565 MER20 218 + 96 145 206007 49 chain 19048 chr2 243199373 + 156109116 156109351 L1PA7 6471 - 13 257 129979 31 1 10 203 chain 188525 chr2 243199373 + 156147263 156149576 L1PA7 6471 - 258 2593 20193 513 0 2 82 0 19 497 17 7 421 0 4 7 2 4 5 2 0 36 0 1 6 0 1 350 0 1 14 0 2 192 1 2 41 1 2 126 chain 19191 chr2 243199373 + 156149576 156149806 L1PA7 6471 + 6236 6465 129552 84 1 0 145 chain 23697 chr2 243199373 + 156187628 156187931 L1PA4 6152 - 0 287 112048 16 7 0 185 0 2 6 12 1 77 chain 10512 chr2 243199373 + 156200052 156200174 MER4E 760 + 638 760 158194 122 chain 455214 chr2 243199373 + 156202028 156207882 L1PA8 5853 - 6 5803 8570 88 1 0 15 1 0 45 25 23 68 2 0 164 0 1 434 0 2 474 4 1 322 20 2 384 0 3 108 5 9 116 1 2 187 0 3 487 0 1 26 2 0 397 0 4 193 10 14 147 0 3 31 0 3 71 0 2 271 1 0 5 0 1 319 1 0 665 1 0 4 4 5 83 1 2 5 8 0 112 10 6 4 1 0 22 0 1 200 19 7 137 0 4 53 52 16 13 1 0 11 2 0 21 chain 36044 chr2 243199373 + 156260927 156261414 LTR10B 488 + 0 478 74840 11 2 1 97 7 1 17 10 8 343 chain 7686 chr2 243199373 + 156294340 156294444 L1PA16 3655 - 1001 1103 173004 10 3 1 91 chain 252325 chr2 243199373 + 156300348 156303062 L1PA2 6032 - 4 2718 16112 2714 chain 52531 chr2 243199373 + 156303062 156303638 L1PA2 6032 + 2730 3306 57182 576 chain 11538 chr2 243199373 + 156309286 156309428 L1PA7 6471 + 6289 6432 154150 24 0 1 118 chain 539648 chr2 243199373 + 156323141 156329154 L1PA3long 6157 - 0 6157 2870 849 0 4 598 0 1 89 0 4 1319 0 1 108 0 1 2274 0 128 209 0 4 408 7 8 152 chain 20241 chr2 243199373 + 156329297 156329547 L1PA6 6164 + 5910 6161 126409 31 0 1 68 1 0 8 0 1 142 chain 272016 chr2 243199373 + 156333293 156336447 L1PA5 6144 + 2974 6134 15078 185 4 0 334 0 1 932 9 14 211 0 1 831 0 3 143 1 0 362 1 0 5 0 2 136 chain 75784 chr2 243199373 + 156356872 156357685 L1PA2 6032 - 0 813 45603 813 chain 32466 chr2 243199373 + 156357685 156358039 L1PA2 6032 + 4860 5214 80083 354 chain 56771 chr2 243199373 + 156395515 156396238 L1PB 1623 + 571 1302 54672 11 0 1 73 7 13 541 1 0 63 0 2 27 chain 352866 chr2 243199373 + 156426750 156431160 L1PA5 6144 - 0 4081 11529 149 0 1 620 0 1 72 0 4 446 0 7 503 0 4 660 3 0 5 0 5 807 0 3 24 315 0 514 0 6 205 42 0 45 chain 23977 chr2 243199373 + 156430048 156430345 AluYk4 311 - 11 302 110467 17 6 0 274 chain 2470 chr2 243199373 + 156431078 156431108 L1PA5 6144 - 4042 4073 233479 6 0 1 24 chain 2890 chr2 243199373 + 156431160 156431193 L1PA5 6144 + 2028 2061 220219 33 chain 26817 chr2 243199373 + 156501647 156501928 AluYb8 318 - 0 281 96921 281 chain 19673 chr2 243199373 + 156526219 156526428 AluYb8 318 + 109 318 128189 209 chain 9090 chr2 243199373 + 156529671 156529942 L1MC1 2226 + 1074 1341 165118 21 3 1 48 3 0 6 125 126 65 chain 13674 chr2 243199373 + 156609367 156609535 L1PA6 6164 + 5994 6162 145695 168 chain 24226 chr2 243199373 + 156617572 156617905 L1PA7 6471 + 6138 6469 109056 148 1 0 11 22 23 139 2 0 10 chain 306893 chr2 243199373 + 156619959 156624029 L1P3 4156 - 17 4156 13137 24 2 1 8 2 0 61 1 2 253 0 1 185 0 1 64 4 5 14 3 4 244 0 1 156 0 3 15 0 4 403 1 2 428 1 0 362 0 10 63 0 4 478 7 1 7 0 6 294 14 23 263 44 62 34 1 0 4 0 1 10 14 20 56 3 4 147 15 18 72 5 4 55 13 22 240 chain 29833 chr2 243199373 + 156632624 156632983 L1PA7 6471 + 6112 6469 85340 347 2 0 10 chain 7642 chr2 243199373 + 156647292 156647382 L1PA8 5853 - 0 90 173270 90 chain 31154 chr2 243199373 + 156685415 156685847 THE1D-int 1627 - 0 1615 82249 32 0 1 36 22 1203 35 0 1 307 chain 3645 chr2 243199373 + 156691986 156692100 MSTB2-int 240 + 86 199 212888 22 58 57 34 chain 20952 chr2 243199373 + 156704351 156704576 AluY 311 + 85 311 124094 47 0 1 178 chain 150681 chr2 243199373 + 156731502 156733388 L1P1 4361 + 4 1924 24518 121 16 30 167 3 7 98 15 16 128 1 2 215 0 1 327 0 1 550 1 12 57 0 1 187 chain 168206 chr2 243199373 + 156733389 156735301 L1PA5 6144 + 4230 6144 22262 1057 2 3 5 0 3 834 3 1 11 chain 526252 chr2 243199373 + 156736423 156743174 L1PA7 6471 + 0 6470 4566 84 1 2 317 0 1 490 1 0 31 13 17 216 1 2 131 1 0 96 0 2 166 0 1 516 0 1 423 1 2 141 0 2 843 0 2 11 1 0 325 1 3 177 4 0 816 1 6 43 0 1 87 1 0 29 0 1 112 1 3 521 2 0 62 320 6 67 0 2 65 0 11 181 1 0 121 0 1 9 0 1 309 0 2 12 chain 359559 chr2 243199373 + 156779557 156784159 HERVL-int 5654 - 1003 5654 11368 100 2 0 46 0 98 461 4 6 897 70 0 348 25 27 161 0 3 207 7 12 288 16 17 253 0 2 288 14 0 105 1 13 201 1 0 4 0 1 141 0 1 31 8 9 35 11 14 180 0 1 79 0 1 4 2 1 373 0 2 76 6 7 115 0 1 42 chain 3380 chr2 243199373 + 156784167 156784204 MLT2A1 477 - 8 45 217500 37 chain 548956 chr2 243199373 + 156822399 156828427 L1PA2 6032 + 1 6032 1582 255 1 0 8 0 1 307 0 1 1218 0 5 2022 0 1 1027 1 0 136 0 1 196 1 0 687 5 0 8 0 5 142 3 0 11 chain 9814 chr2 243199373 + 156872729 156873051 MLT1A 405 - 59 405 161526 32 32 33 59 144 164 40 0 3 15 chain 37329 chr2 243199373 + 156883428 156883863 L1PA7 6471 + 6026 6461 73053 435 chain 28064 chr2 243199373 + 156897610 156897917 AluYa5 310 - 8 310 92779 205 5 0 97 chain 146654 chr2 243199373 + 156906118 156908365 L1PA10 4194 + 1954 3855 25062 201 0 4 449 7 4 11 0 2 23 1 0 15 1 0 296 1 0 97 0 1 266 5 6 67 0 1 5 1 0 23 20 8 179 0 11 16 350 2 48 0 1 165 chain 373091 chr2 243199373 + 156934788 156940047 L1PB1 5432 - 23 5373 10989 5 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 24 12 16 1 0 43 1 0 16 2 1 53 37 29 20 91 15 106 4 3 194 0 4 140 0 190 109 0 1 12 38 22 65 6 12 292 7 21 136 0 1 69 0 6 826 0 3 49 1 0 126 1 2 122 1 0 9 15 12 77 3 0 6 12 8 186 1 0 41 0 1 196 0 7 296 0 1 303 70 55 27 0 2 121 0 1 246 14 15 4 1 0 291 0 5 16 1 0 48 0 1 4 1 0 205 2 1 5 1 0 200 0 3 140 chain 18821 chr2 243199373 + 156960347 156960551 L1PA3long 6157 - 11 215 130608 204 chain 98526 chr2 243199373 + 156962588 156963737 L1PA5 6144 + 4972 6144 37144 8 0 1 309 1 5 79 0 2 91 0 2 161 0 15 486 3 2 11 chain 20597 chr2 243199373 + 156978953 156979313 THE1C 375 + 0 375 125307 40 0 5 69 25 22 36 8 11 17 7 0 6 26 43 126 chain 82469 chr2 243199373 + 156997066 156998005 L1PA5 6144 - 1370 2310 42557 151 0 1 636 1 0 4 0 1 147 chain 118926 chr2 243199373 + 156998005 156999359 L1PA5 6144 + 4779 6138 31444 514 1 5 807 0 1 32 chain 49581 chr2 243199373 + 157000449 157001021 L1PA4 6152 + 5574 6152 59337 423 5 6 138 0 5 6 chain 5182 chr2 243199373 + 157046843 157046901 L1PA5 6144 + 5931 5989 193213 58 chain 13931 chr2 243199373 + 157046901 157047055 L1PA5 6144 + 5990 6144 144817 154 chain 20391 chr2 243199373 + 157077122 157077335 AluYa5 310 - 0 213 125925 213 chain 292398 chr2 243199373 + 157077616 157081664 L1PA11 4918 + 433 4485 13869 4 1 0 34 32 45 256 2 0 336 0 4 317 5 8 10 0 1 153 12 16 12 0 2 97 5 6 79 0 1 169 0 1 43 1 0 5 1 2 213 1 2 5 3 0 162 6 5 92 0 2 23 4 0 7 8 6 85 1 0 4 0 1 9 1 2 63 9 6 46 12 20 94 0 2 33 0 1 543 7 8 198 1 0 31 8 6 161 10 11 27 9 0 163 9 1 265 8 6 46 12 11 14 2 0 66 2 0 11 chain 3762 chr2 243199373 + 157092457 157092539 MADE1 96 - 1 96 210921 34 25 38 23 chain 8493 chr2 243199373 + 157110371 157110585 L1PREC2 3366 + 2752 2946 168332 54 5 4 40 1 0 3 3 0 14 74 59 20 chain 552345 chr2 243199373 + 157111030 157117044 L1PA2 6032 + 1 6019 1154 1555 0 3 2196 0 1 2263 chain 15646 chr2 243199373 + 157120291 157120493 MER1B 344 - 78 281 139448 108 3 4 91 chain 23840 chr2 243199373 + 157139918 157140210 L1PA5 6144 - 2 289 111254 84 5 0 203 chain 127086 chr2 243199373 + 157149408 157150846 SVA_F 1814 + 6 1813 28795 695 0 40 92 0 330 6 1 0 286 0 3 339 3 0 16 chain 72139 chr2 243199373 + 157160451 157161399 L1PA8 5853 + 4919 5853 47410 87 1 0 3 2 0 161 7 9 86 0 1 298 1 0 44 2 0 67 5 4 14 1 0 47 2 1 19 2 1 57 10 3 32 chain 3117 chr2 243199373 + 157162917 157162970 L1M3 994 + 536 583 222593 35 6 0 12 chain 12766 chr2 243199373 + 157210767 157211078 L1MB3 1562 - 40 323 149188 83 55 32 21 51 47 70 7 6 24 chain 173472 chr2 243199373 + 157224100 157226638 SVA_E 1901 + 0 1885 21655 153 1 0 172 3 0 492 1 0 26 1 0 80 600 0 104 49 0 240 0 1 4 0 1 612 chain 2487 chr2 243199373 + 157225030 157225064 SVA_E 1901 + 1095 1129 136253 34 chain 33177 chr2 243199373 + 157225083 157225544 SVA_E 1901 + 923 1365 78944 37 48 0 48 1 0 159 36 66 132 chain 1829 chr2 243199373 + 157225120 157225145 SVA_E 1901 + 1262 1287 136253 25 chain 4000 chr2 243199373 + 157225544 157225587 SVA_E 1901 + 1111 1154 132498 43 chain 3306 chr2 243199373 + 157225744 157225782 SVA_E 1901 + 817 855 139937 38 chain 526221 chr2 243199373 + 157226796 157232901 L1PA5 6144 - 19 6144 4567 320 2 0 507 1 5 730 1 0 476 0 2 322 6 0 258 0 22 325 2 0 382 1 0 7 1 0 1033 0 1 565 9 0 316 1 0 695 10 24 135 chain 6311 chr2 243199373 + 157257280 157257352 tRNA-Ala-GCG 72 + 0 72 182711 72 chain 5143 chr2 243199373 + 157257670 157257729 tRNA-Gly-GGY 63 - 5 63 193634 4 1 0 54 chain 8490 chr2 243199373 + 157271971 157272084 L1PB1 5432 - 151 262 168351 44 1 0 16 2 1 50 chain 16184 chr2 243199373 + 157272384 157272558 AluYa5 310 + 133 307 137805 174 chain 4233 chr2 243199373 + 157278707 157278812 U13_ 108 + 2 106 204122 43 41 40 21 chain 161302 chr2 243199373 + 157307177 157309095 SVA_D 2077 - 1 2070 23149 675 4 0 13 74 0 77 22 49 4 0 1 172 0 51 43 0 83 99 1 13 171 0 40 422 0 11 124 1 0 4 0 5 12 chain 4892 chr2 243199373 + 157307869 157307943 SVA_D 2077 - 918 992 78705 74 chain 24294 chr2 243199373 + 157315916 157316221 AluSc5 308 + 0 302 108683 107 9 6 189 chain 8449 chr2 243199373 + 157319383 157319480 L1PA5 6144 + 6033 6130 168570 97 chain 11539 chr2 243199373 + 157325977 157326125 L1MA3 4352 - 437 586 154147 144 0 1 4 chain 15007 chr2 243199373 + 157326402 157326642 MER41A 554 - 0 554 141300 53 12 16 14 0 5 9 0 17 29 5 15 60 0 278 58 chain 217563 chr2 243199373 + 157384952 157387342 L1PA3long 6157 - 0 2400 18028 459 0 1 1408 0 9 523 chain 6552 chr2 243199373 + 157471242 157471314 L1PA6 6164 - 4 76 180830 72 chain 120402 chr2 243199373 + 157473678 157475136 LTR12C 1709 - 0 1709 30904 84 7 6 115 0 1 258 4 0 17 0 4 106 1 0 6 1 0 3 0 160 95 0 118 333 30 7 202 2 0 194 chain 62811 chr2 243199373 + 157501269 157502058 LTR17 781 + 0 781 51535 303 10 0 23 0 1 431 10 11 12 chain 3537 chr2 243199373 + 157533526 157533625 MER3 215 + 55 178 214752 27 1 7 14 18 37 14 7 6 18 chain 15311 chr2 243199373 + 157540703 157541002 MER2 342 - 24 322 140457 36 23 16 34 7 6 16 1 2 4 1 0 94 0 1 18 32 38 33 chain 36764 chr2 243199373 + 157544702 157545130 L1PA5 6144 - 0 430 73854 11 1 3 416 chain 58198 chr2 243199373 + 157568384 157569387 L1PA14 3548 - 92 1041 53864 41 1 0 17 1 0 20 4 2 34 5 1 10 1 0 110 1 0 66 5 6 12 9 6 13 14 10 66 18 23 14 2 0 5 2 0 47 2 0 11 9 4 24 1 0 19 1 2 131 36 0 74 27 13 103 1 21 14 1 0 25 1 0 5 chain 119827 chr2 243199373 + 157571523 157573038 L1PA10 4194 - 124 1663 31112 289 0 1 32 1 0 100 0 2 276 7 10 174 0 1 117 1 10 75 5 7 276 0 3 18 1 5 143 chain 25062 chr2 243199373 + 157576601 157577007 LTR7 482 - 6 482 104496 126 1 0 44 0 1 13 0 31 36 0 1 23 18 69 17 15 14 15 29 17 69 chain 288650 chr2 243199373 + 157578270 157581942 HERVH-int 3825 - 0 3825 14111 150 7 3 69 0 2 101 0 2 160 8 218 23 0 3 13 19 21 383 1 0 88 0 1 4 1 0 287 1 2 578 5 32 456 15 0 447 0 3 10 0 2 10 0 1 36 21 0 21 46 1 12 46 0 30 1 0 4 23 55 7 4 0 10 1 0 10 1 0 24 0 1 6 1 0 6 13 12 139 1 0 159 0 11 49 0 3 74 8 0 27 0 3 56 chain 27572 chr2 243199373 + 157581944 157582356 LTR7 482 - 0 482 94427 132 1 0 44 0 1 13 0 31 36 0 1 38 49 0 3 2 0 25 0 89 69 chain 20358 chr2 243199373 + 157602193 157602486 MER58B 340 - 1 292 126042 13 4 1 83 0 1 8 3 4 114 0 1 11 6 4 51 chain 13069 chr2 243199373 + 157609354 157609547 MER107 203 + 4 203 147956 94 1 0 33 2 3 17 13 19 33 chain 8521 chr2 243199373 + 157615759 157616330 L1PREC2 3366 + 2813 3249 168186 37 1 0 3 3 0 14 52 39 10 8 6 29 4 1 11 22 8 24 0 1 10 6 4 15 246 171 19 8 3 8 4 0 15 14 0 8 chain 10469 chr2 243199373 + 157617998 157618225 THE1B 368 + 138 368 158394 38 0 2 6 57 59 63 17 16 46 chain 84109 chr2 243199373 + 157618225 157619498 L1PB1 5432 + 4121 5398 41851 32 5 6 59 0 20 30 0 1 215 6 11 71 11 5 50 1 0 7 4 0 22 0 1 6 0 4 140 8 0 313 1 0 19 2 1 8 3 2 12 2 0 3 2 0 9 2 0 52 18 16 44 1 0 16 1 0 4 2 0 13 33 41 16 1 0 22 1 0 6 chain 466902 chr2 243199373 + 157627895 157633087 L1PA3long 6157 - 9 6157 8154 1018 0 1 1866 0 1 228 0 1 1296 5 956 521 0 1 106 0 1 152 chain 137607 chr2 243199373 + 157637132 157639431 L1PB1 5432 + 3466 5404 26543 14 330 0 181 6 0 7 6 12 49 2 3 255 0 12 149 0 1 13 4 5 44 1 0 6 1 2 407 3 0 186 1 4 109 0 3 109 9 10 5 1 0 51 31 11 33 16 11 9 2 0 53 2 1 16 1 0 44 1 0 20 19 7 19 8 5 14 2 0 24 1 0 21 1 0 13 chain 11067 chr2 243199373 + 157694847 157695006 MER30 238 - 0 206 155938 29 1 28 49 3 23 77 chain 30005 chr2 243199373 + 157713043 157713405 THE1B-int 1605 - 1244 1605 84794 6 1 0 355 chain 19798 chr2 243199373 + 157715476 157715699 L1PA5 6144 - 7 232 127817 64 0 2 159 chain 34986 chr2 243199373 + 157729410 157729797 L1PA7 6471 + 6072 6459 76200 387 chain 17174 chr2 243199373 + 157738453 157738664 L1PA7 6471 - 6 213 135097 6 4 0 201 chain 38366 chr2 243199373 + 157754963 157755415 L1PA7 6471 + 6017 6470 71624 356 1 2 95 chain 4915 chr2 243199373 + 157778963 157779044 MER6A 605 - 0 83 196108 37 10 12 34 chain 7860 chr2 243199373 + 157811138 157811240 L1PA15-16 3068 + 939 1041 171942 102 chain 557484 chr2 243199373 + 157818854 157824995 L1PA3long 6157 - 0 6151 560 148 0 2 855 0 1 481 1 0 402 0 3 220 0 4 3333 0 1 701 chain 79332 chr2 243199373 + 157850494 157851378 L1PA3long 6157 - 2227 3111 43741 884 chain 203465 chr2 243199373 + 157851378 157853608 L1PA3long 6157 + 3925 6157 18963 435 0 2 1795 chain 26311 chr2 243199373 + 157879029 157879382 THE1B 368 + 0 368 98783 44 0 15 110 3 0 5 0 2 12 7 4 165 0 4 7 chain 8909 chr2 243199373 + 157881000 157881112 THE1B 368 + 55 169 166090 9 0 2 103 chain 10985 chr2 243199373 + 157881113 157881252 THE1B 368 + 169 306 156251 23 2 0 114 chain 44837 chr2 243199373 + 157884737 157885282 L1PA7 6471 + 5922 6468 63243 214 0 1 181 0 4 139 4 0 7 chain 24698 chr2 243199373 + 157911441 157911711 L1PA3long 6157 + 5887 6157 106449 270 chain 352434 chr2 243199373 + 157926146 157930270 L1PA6 6164 + 2028 6161 11539 304 4 0 210 0 2 283 0 15 342 8 7 510 3 0 592 1 0 1639 0 1 228 chain 15179 chr2 243199373 + 157943281 157943580 MER39B 650 - 82 374 140827 6 2 0 14 60 54 33 13 14 96 3 0 5 0 4 39 1 0 27 chain 478339 chr2 243199373 + 157953771 157959315 L1PA5 6144 - 0 5523 7787 332 0 1 137 0 2 817 0 3 78 22 0 480 1 0 12 0 2 1608 0 2 176 0 1 1324 9 0 548 chain 145456 chr2 243199373 + 157975474 157977695 L1PB1 5432 - 34 2101 25263 6 1 0 22 1 0 21 93 80 33 18 16 51 2 0 11 16 11 9 1 0 24 13 11 7 0 2 429 3 19 24 0 1 4 4 6 293 158 0 105 1 0 221 1 0 31 1 0 148 0 3 78 3 7 313 5 11 70 chain 18485 chr2 243199373 + 157983483 157983833 MER51B 395 + 0 388 131547 40 14 33 27 14 22 41 33 0 7 0 33 6 2 0 6 0 2 28 1 0 49 7 19 75 chain 380771 chr2 243199373 + 157994861 158000000 L1PB1 5432 - 8 5131 10728 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 9 0 14 5 2 12 20 19 23 11 10 10 2 1 53 2 0 9 6 2 9 1 0 11 1 0 22 1 0 5 30 26 376 0 2 66 0 1 268 9 0 151 0 1 226 0 1 259 1 6 233 0 1 119 0 1 101 0 11 191 1 0 236 1 0 333 0 2 292 5 4 567 9 10 228 18 5 252 4 5 218 5 10 178 0 15 96 2 1 72 2 1 138 14 15 90 chain 97316 chr2 243199373 + 158000000 158001340 L1PBa1 4058 - 2707 4048 37479 26 0 2 220 1 0 66 0 1 8 0 4 73 0 1 211 0 1 75 2 0 5 1 2 223 5 6 87 3 2 104 14 14 18 5 12 134 12 9 10 19 9 18 chain 38089 chr2 243199373 + 158032666 158033145 THE1B-int 1605 + 1140 1605 72004 152 0 1 101 17 0 51 0 1 111 0 1 5 1 0 36 0 1 5 chain 3099 chr2 243199373 + 158038925 158039002 MER130 121 - 22 101 222932 28 30 32 19 chain 25988 chr2 243199373 + 158052614 158052907 AluYk4 311 + 0 287 100063 118 6 0 169 chain 7128 chr2 243199373 + 158059429 158059588 MER20 218 - 55 196 176559 51 38 31 22 1 0 23 0 1 4 11 0 9 chain 52404 chr2 243199373 + 158080914 158081510 L1PA5 6144 + 5536 6131 57350 355 2 1 239 chain 50349 chr2 243199373 + 158081571 158082211 L1PREC2 3366 + 1857 2506 58758 81 0 4 18 0 1 278 0 5 4 1 0 258 chain 13483 chr2 243199373 + 158091985 158092169 L1PA6 6164 + 5980 6161 146402 13 1 2 158 4 0 8 chain 38933 chr2 243199373 + 158097341 158097832 MER75 514 - 11 503 70823 465 9 10 17 chain 517251 chr2 243199373 + 158130335 158136464 L1PA6 6164 - 7 6164 5460 15 34 23 286 1 4 194 12 4 180 0 1 142 1 0 398 0 2 229 1 0 176 0 5 353 0 4 33 0 1 5 1 2 61 2 1 347 3 0 423 0 4 74 0 1 108 1 0 391 0 2 1072 0 9 783 0 17 38 3 0 202 1 0 99 0 8 460 chain 17243 chr2 243199373 + 158155392 158155670 7SK 245 - 7 245 134944 24 4 5 37 41 1 45 1 0 126 chain 43152 chr2 243199373 + 158196393 158196961 MER41A 554 - 0 554 65228 437 11 5 26 8 0 86 chain 5762 chr2 243199373 + 158197445 158197528 LTR7C 471 + 379 462 187520 60 7 7 16 chain 118708 chr2 243199373 + 158197551 158199169 HERVH-int 3825 - 1445 3056 31529 285 4 9 136 4 14 46 6 8 141 10 6 304 9 0 201 22 7 48 1 4 296 1 2 66 14 15 14 1 0 9 chain 7061 chr2 243199373 + 158208561 158208680 Tigger1 2417 + 218 333 177030 50 24 20 45 chain 558109 chr2 243199373 + 158225047 158231078 L1PA2 6032 + 0 6031 491 6031 chain 73773 chr2 243199373 + 158240701 158241670 L1PA8A 6298 + 4225 5192 46634 599 0 1 58 0 1 105 5 10 6 5 0 35 4 0 152 chain 29198 chr2 243199373 + 158246272 158246598 L1PA3long 6157 - 15 341 88063 326 chain 192084 chr2 243199373 + 158246598 158249248 L1PA14 3548 - 489 3167 19861 54 2 0 4 2 0 48 2 0 14 3 1 186 3 7 57 1 0 1 1 0 21 9 16 25 0 10 50 0 4 25 2 1 565 1 0 4 0 1 5 1 3 30 0 1 403 2 4 560 9 9 279 0 2 5 4 3 22 0 1 25 1 2 9 16 14 27 21 29 151 chain 31785 chr2 243199373 + 158253648 158254053 L1PA5 6144 - 14 391 81195 93 28 0 284 chain 497824 chr2 243199373 + 158254111 158260197 L1PA3long 6157 - 0 6141 6968 2468 0 1 352 0 1 1043 1 8 983 26 26 52 48 39 13 0 3 455 1 8 126 0 1 196 0 30 209 14 28 99 chain 96574 chr2 243199373 + 158261371 158262507 L1PA4 6152 - 0 1129 37675 631 23 10 210 1 0 68 4 1 20 0 10 179 chain 53699 chr2 243199373 + 158294244 158294980 L1MA5A 2387 + 1603 2303 56547 39 1 0 391 1 0 36 1 0 39 1 0 47 2 0 32 1 0 28 3 0 17 34 6 58 0 2 5 chain 45417 chr2 243199373 + 158337639 158338372 L1M1 2793 + 766 1503 62572 6 2 0 30 1 0 29 3 1 9 0 2 28 0 15 7 29 26 84 1 0 157 4 5 10 0 2 5 1 0 69 4 0 18 7 0 90 4 6 26 0 3 41 12 11 41 4 5 11 chain 18819 chr2 243199373 + 158368527 158368799 L1PA8 5853 - 0 265 130614 14 1 0 79 1 0 16 1 0 48 9 8 7 1 0 73 2 0 20 chain 6354 chr2 243199373 + 158370846 158370959 L1PB1 5432 + 5308 5412 182348 19 12 8 11 2 0 24 1 0 21 1 0 13 1 0 8 chain 550942 chr2 243199373 + 158371655 158377685 L1PA2 6032 + 1 6031 1325 256 1 0 1797 0 2 328 0 2 233 2 1 1251 0 1 1064 0 1 486 4 0 608 chain 112465 chr2 243199373 + 158403329 158404543 L1PA2 6032 - 1 1215 33547 1214 chain 63669 chr2 243199373 + 158404543 158405227 L1PA2 6032 + 4120 4804 51027 684 chain 29895 chr2 243199373 + 158411613 158411930 AluYb8 318 - 2 318 85116 198 1 0 118 chain 210823 chr2 243199373 + 158418880 158421635 L1PA8 5853 + 3126 5853 18442 91 64 2 17 0 26 192 4 0 8 0 6 439 0 2 242 3 5 458 0 1 245 0 1 145 1 6 80 1 2 75 8 11 383 2 1 46 2 0 12 1 0 48 2 1 11 1 0 6 1 0 52 2 1 19 1 0 93 chain 563678 chr2 243199373 + 158422865 158428889 L1HS 6032 + 6 6030 246 478 5 0 1241 0 5 4300 chain 30077 chr2 243199373 + 158433347 158433666 AluYb9 318 - 0 318 84574 200 1 0 118 chain 45405 chr2 243199373 + 158446037 158446688 L1PB3 3668 + 2191 2846 62588 123 0 4 24 1 2 110 6 0 213 2 3 87 30 34 55 chain 5407 chr2 243199373 + 158469838 158469913 MER2 342 - 121 207 190914 46 0 11 29 chain 2683 chr2 243199373 + 158472868 158473020 L1MCa 1829 - 975 1144 230397 18 107 124 27 chain 45239 chr2 243199373 + 158478740 158479403 L1MA1 4479 + 3487 4142 62781 33 2 0 61 1 0 134 1 0 21 1 0 4 1 0 15 1 0 71 2 1 18 2 0 13 5 1 18 1 14 54 14 10 119 5 4 29 2 0 35 chain 29177 chr2 243199373 + 158489369 158489675 AluYa5 310 - 4 310 88164 306 chain 45139 chr2 243199373 + 158502096 158502596 L1PA3long 6157 + 5652 6152 62881 500 chain 34413 chr2 243199373 + 158510930 158511420 MLT2A1 477 + 0 477 77040 168 5 2 210 46 35 5 0 1 56 chain 62337 chr2 243199373 + 158516518 158517632 L1PA8 5853 + 5062 5853 51742 120 319 0 382 1 0 47 2 0 26 0 3 42 1 0 5 1 5 5 5 0 43 2 1 19 2 1 92 chain 50646 chr2 243199373 + 158527695 158528263 L1PA5 6144 - 0 568 58540 568 chain 28042 chr2 243199373 + 158534083 158534420 L1PA5 6144 + 5791 6128 92848 196 12 12 129 chain 5860 chr2 243199373 + 158550741 158550815 MER30 238 - 2 85 186589 29 0 9 45 chain 536847 chr2 243199373 + 158560699 158567129 L1PA7 6471 + 7 6467 3333 254 4 3 138 5 6 211 10 7 75 1 0 188 26 48 605 0 1 286 0 1 337 0 1 351 0 2 104 24 7 498 0 6 367 1 0 1446 1 0 77 0 26 569 1 0 700 3 1 132 3 0 13 chain 11609 chr2 243199373 + 158586563 158586695 L1PA7 6471 + 4718 4850 153858 132 chain 62956 chr2 243199373 + 158586695 158587462 L1PA7 6471 + 4854 5621 51467 268 16 16 483 chain 55203 chr2 243199373 + 158587469 158588098 L1PA7 6471 + 5634 6265 55580 64 0 2 565 chain 16893 chr2 243199373 + 158588107 158588306 L1PA7 6471 + 6272 6470 135859 186 1 0 12 chain 22037 chr2 243199373 + 158590554 158590924 THE1C 375 + 0 375 120080 9 0 5 26 19 15 51 33 37 34 0 3 14 10 4 6 0 3 168 chain 346688 chr2 243199373 + 158608538 158613447 L1PB1 5432 + 22 5103 11703 130 22 22 88 13 10 172 3 0 117 0 520 204 1 0 105 20 13 40 1 0 164 1 0 7 0 1 100 0 1 25 299 0 164 0 3 437 1 0 147 0 2 326 1 0 13 3 1 530 6 5 357 64 13 431 1 0 47 6 7 129 0 1 36 0 1 89 1 6 142 6 7 72 3 2 191 1 3 62 0 4 41 8 10 73 0 1 9 chain 2722 chr2 243199373 + 158633877 158633952 MER33 330 + 86 158 229852 22 20 16 16 3 4 14 chain 41047 chr2 243199373 + 158715542 158716087 MER41A 554 + 0 554 67835 83 9 10 308 8 9 17 0 5 28 0 1 43 0 1 49 chain 6580 chr2 243199373 + 158763526 158763620 MLT1B 390 - 16 109 180607 15 5 4 74 chain 20223 chr2 243199373 + 158770559 158770877 L1PA16 3655 + 3263 3588 126460 27 13 19 64 0 3 25 17 20 118 7 5 34 3 0 10 chain 8004 chr2 243199373 + 158779937 158780021 MER9a2 513 - 74 158 171032 84 chain 64429 chr2 243199373 + 158783846 158786727 Tigger4 2445 - 85 2224 50827 40 1 0 7 6 2 26 2 1 15 2 1 35 25 28 18 2 1 17 41 45 9 0 1 9 5 4 23 6 5 30 1 0 12 14 0 144 0 4 120 1650 1013 52 89 0 21 1 0 182 0 1 135 7 5 43 7 6 11 1 0 5 0 1 14 6 7 28 4 3 15 chain 6983 chr2 243199373 + 158786159 158786247 Tigger4 2445 + 1040 1128 174902 59 1 0 4 0 1 24 chain 384802 chr2 243199373 + 158820263 158827943 L1PB1 5432 - 12 5413 10616 11 10 9 9 1 0 18 1 0 27 2 0 14 8 5 30 37 23 37 1 0 16 2 1 53 2 0 9 4 0 11 1 0 9 1 0 24 1 0 11 341 2 49 1 0 5 3 0 5 23 29 345 0 17 30 4 0 14 0 10 120 0 1 29 4 5 222 2 0 49 0 14 220 0 3 57 304 0 149 2 0 28 318 0 112 0 1 572 1338 8 56 1 0 4 7 6 99 3 0 18 6 5 153 0 1 78 1 6 88 3 0 115 0 4 176 0 4 88 4 3 55 1 3 118 0 1 220 1 2 100 0 1 55 0 4 68 11 12 55 6 0 141 12 15 88 0 1 53 0 1 175 1 4 367 0 3 76 3 0 113 15 15 18 22 26 121 0 6 39 22 0 128 chain 98109 chr2 243199373 + 158823621 158824947 LTR12C 1709 - 0 1709 37249 82 1 0 138 0 1 169 31 0 91 0 4 86 0 138 12 0 28 50 5 205 176 3 4 56 6 5 64 19 62 13 1 2 323 chain 25629 chr2 243199373 + 158835711 158836049 THE1B 368 + 7 357 101586 37 0 15 113 1 0 28 2 0 49 0 3 5 3 0 100 chain 117684 chr2 243199373 + 158836061 158837627 THE1B-int 1605 + 1 1605 31898 432 0 25 252 1 2 57 22 32 110 29 27 464 3 4 24 0 1 23 8 9 131 1 2 9 chain 4244 chr2 243199373 + 158845077 158845126 L1PA7 6471 + 6258 6307 203953 49 chain 14038 chr2 243199373 + 158845127 158845286 L1PA7 6471 + 6309 6469 144425 136 0 1 23 chain 125455 chr2 243199373 + 158883599 158885167 THE1A-int 1579 - 0 1579 29259 9 0 1 43 1 0 640 0 3 226 0 3 107 2 3 60 1 0 75 0 3 379 10 12 15 chain 18555 chr2 243199373 + 158885167 158885387 THE1A 353 - 0 219 131345 178 1 0 41 chain 25605 chr2 243199373 + 158914521 158914833 AluY 311 + 0 311 101701 4 1 0 36 1 0 92 0 1 178 chain 119435 chr2 243199373 + 158920113 158921541 L1PA7 6471 - 3 1442 31253 149 1 2 221 0 1 385 1 0 81 1 5 21 0 4 55 0 1 326 0 1 19 0 1 4 1 0 163 chain 4194 chr2 243199373 + 158921541 158921587 L1P3 4156 + 15 61 202237 46 chain 103704 chr2 243199373 + 158939013 158940226 L1PA7 6471 + 5252 6469 35800 360 3 6 477 0 1 373 chain 362435 chr2 243199373 + 158940418 158945427 L1PB1 5432 - 351 5404 11306 153 0 1 229 0 4 18 4 3 43 0 2 19 9 13 75 0 5 553 0 2 76 0 1 150 8 1 147 1 0 467 0 1 42 2 1 31 4 0 33 0 4 165 123 133 778 0 4 397 0 3 116 0 2 5 18 15 158 1 3 74 12 19 52 1 0 4 0 1 80 7 9 59 0 1 6 31 31 109 32 32 188 1 6 174 0 1 78 1 0 80 0 1 195 chain 97204 chr2 243199373 + 158966523 158967670 L1PA5 6144 - 5 1150 37513 306 1 0 27 0 1 30 0 11 168 21 0 285 0 3 7 0 4 96 0 1 206 chain 39451 chr2 243199373 + 159001770 159002246 LTR10F 562 + 0 562 70090 145 0 87 62 1 0 268 chain 402391 chr2 243199373 + 159002246 159008035 L1PB1 5432 + 75 5418 10018 28 4 6 20 1 3 271 2 1 384 2 0 191 0 3 14 0 2 161 0 4 246 14 6 270 0 1 15 0 1 539 310 0 180 5 0 68 0 3 79 1 0 249 2 1 21 1 0 661 13 24 69 8 7 16 18 27 83 1 7 125 0 1 68 0 3 291 9 7 78 0 1 193 0 1 78 0 2 30 11 7 86 0 1 95 24 38 233 1 0 4 0 4 12 160 15 8 3 0 21 1 0 9 20 15 6 2 0 51 3 2 16 1 0 43 1 0 16 25 12 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 14 chain 61481 chr2 243199373 + 159011164 159012424 L1M1 2793 + 492 1617 52123 7 1 0 10 1 0 11 224 141 33 118 82 14 20 19 22 2 0 8 1 0 45 19 16 103 1 0 177 1 0 26 1 5 58 7 0 84 2 1 30 4 3 230 chain 10738 chr2 243199373 + 159050419 159050539 L1PA5 6144 + 6024 6144 157248 120 chain 92114 chr2 243199373 + 159066067 159067173 L1P2 5180 + 1733 2846 38930 128 0 1 188 0 2 734 0 4 56 chain 17887 chr2 243199373 + 159067493 159067707 L1PA7 6471 + 6256 6470 133145 214 chain 7358 chr2 243199373 + 159072055 159072154 L1PA5 6144 - 0 96 175039 11 3 1 11 1 0 73 chain 536674 chr2 243199373 + 159079344 159085473 L1PA4 6152 + 1 6143 3355 527 4 0 23 0 1 660 0 1 146 0 5 80 1 0 256 0 11 90 0 1 517 1 0 851 0 1 2825 1 0 147 chain 13851 chr2 243199373 + 159104427 159104594 L1PA8 5853 - 0 165 145061 93 1 0 19 2 1 52 chain 94199 chr2 243199373 + 159116746 159118123 L1PA14 3548 + 2148 3484 38301 163 0 1 38 1 0 159 3 0 26 2 1 152 1 0 225 0 1 24 3 1 14 2 0 30 4 0 15 2 0 7 2 0 104 13 9 13 2 0 6 6 5 79 1 0 111 4 3 6 4 0 31 34 30 13 2 1 42 6 0 7 1 0 19 chain 22689 chr2 243199373 + 159119011 159119369 THE1D 372 - 0 370 117127 144 21 22 11 16 26 8 0 1 50 1 2 4 1 0 102 chain 13223 chr2 243199373 + 159122997 159123327 L1PB1 5432 - 5 302 147377 5 2 0 10 1 0 8 14 12 22 1 0 20 74 57 57 5 4 13 1 0 52 2 0 8 7 3 10 1 0 12 1 0 4 chain 547192 chr2 243199373 + 159134650 159140797 L1PA3long 6157 + 1 6157 1808 1189 0 3 342 1 0 4 0 1 1707 0 1 2052 4 8 706 0 1 142 chain 28830 chr2 243199373 + 159145304 159145659 THE1A 353 - 0 353 89760 155 1 0 87 1 0 111 chain 74504 chr2 243199373 + 159151618 159152456 L1P1 4361 + 3364 4201 46272 786 1 0 51 chain 41751 chr2 243199373 + 159162888 159163350 L1PA5 6144 + 5682 6144 66958 462 chain 119568 chr2 243199373 + 159166432 159168041 SVA_B 1603 - 0 1603 31192 6 3 0 604 11 138 17 0 40 84 40 0 40 0 3 217 113 0 383 0 5 22 24 8 23 10 1 12 chain 3188 chr2 243199373 + 159167157 159167197 SVA_B 1603 - 929 1161 184105 5 0 192 35 chain 20326 chr2 243199373 + 159168851 159169121 AluSc 308 + 38 308 126155 225 10 12 23 2 0 10 chain 389059 chr2 243199373 + 159184546 159188991 L1PA4 6152 - 18 4476 10483 129 0 2 1272 6 11 346 0 1 96 10 11 46 0 1 710 1 0 343 1 2 210 0 2 396 0 1 879 chain 99896 chr2 243199373 + 159188991 159190272 L1P1 4361 - 663 1963 36737 200 0 1 205 9 6 8 0 3 14 0 2 62 6 5 21 1 0 101 7 19 218 0 4 298 0 1 57 0 1 74 chain 4087 chr2 243199373 + 159190603 159190897 L1MCa 1829 - 1593 1797 206108 7 0 1 17 147 69 17 8 0 24 48 45 19 2 0 5 chain 18968 chr2 243199373 + 159191924 159192278 THE1B 368 - 0 368 130188 128 1 0 8 1 0 18 1 5 8 0 3 12 18 17 16 1 3 33 5 6 25 35 42 44 chain 550238 chr2 243199373 + 159207743 159213754 L1PA2 6032 + 10 6032 1412 238 0 9 5599 0 2 174 chain 518557 chr2 243199373 + 159215897 159222325 L1PA7 6471 + 1 6467 5323 191 10 9 77 1 0 85 6 15 32 0 2 178 36 35 275 34 39 133 1 0 449 0 1 39 11 12 488 1 2 325 9 16 83 3 2 151 11 0 15 1 2 47 0 4 181 5 9 192 8 12 252 2 0 195 0 4 260 0 4 19 1 0 421 0 1 413 0 4 526 1 0 413 0 4 82 0 2 765 chain 8490 chr2 243199373 + 159226519 159226630 L1P3 4156 - 35 143 168349 5 1 0 9 2 0 94 chain 364397 chr2 243199373 + 159253742 159258206 L1PA6 6164 + 1601 6156 11245 7 1 0 350 1 0 216 5 4 139 22 27 688 0 3 494 0 1 49 0 1 114 3 0 7 0 2 29 10 9 222 1 0 42 0 3 252 0 72 21 13 17 134 9 0 404 0 1 405 0 8 390 0 1 227 0 6 46 28 30 21 1 0 14 0 1 89 1 0 9 chain 51591 chr2 243199373 + 159265632 159266268 THE1B-int 1605 + 964 1600 57893 636 chain 18296 chr2 243199373 + 159266273 159266622 THE1B 368 + 0 368 132087 15 2 0 32 0 1 63 0 3 5 2 0 50 43 45 14 13 21 50 21 30 39 chain 11625 chr2 243199373 + 159269381 159269504 L1PA3long 6157 - 15 138 153795 123 chain 2907 chr2 243199373 + 159270143 159270191 MER58A 224 - 0 48 226931 25 1 0 4 1 2 17 chain 16713 chr2 243199373 + 159273354 159273714 MSTA 426 - 18 426 136363 91 7 27 33 51 55 55 57 81 66 chain 394023 chr2 243199373 + 159276656 159281239 L1PA5 6144 + 1525 6144 10318 165 3 14 489 0 2 118 3 1 1187 0 1 198 19 20 39 1 4 114 1 2 458 0 4 459 1 15 72 0 1 406 1 0 78 0 1 771 chain 62936 chr2 243199373 + 159285084 159285810 L1PA5 6144 + 5420 6142 51473 715 4 0 7 chain 521312 chr2 243199373 + 159290020 159296136 L1PA5 6144 + 0 6132 5028 121 0 14 70 5 6 257 20 23 438 1 0 98 4 6 136 9 0 954 0 1 774 0 1 271 1 0 76 0 1 1094 0 4 1787 chain 29433 chr2 243199373 + 159340534 159340858 AluYb8 318 - 0 318 86929 72 6 0 246 chain 558043 chr2 243199373 + 159379129 159385161 L1PA2 6032 + 0 6032 496 736 1 0 5150 0 1 145 chain 3400 chr2 243199373 + 159408438 159408801 MLT1D 503 + 0 394 217069 19 98 102 30 193 220 23 chain 15502 chr2 243199373 + 159418320 159418504 L1PA6 6164 - 17 211 139887 83 0 11 30 1 0 70 chain 22528 chr2 243199373 + 159547647 159547923 L1PA7 6471 - 1 293 117900 184 8 24 84 chain 28245 chr2 243199373 + 159554507 159554916 L1PA8 5853 + 5450 5853 92133 114 1 0 47 3 1 15 0 1 51 1 0 5 6 5 50 3 2 19 2 1 92 chain 22414 chr2 243199373 + 159561256 159561668 THE1C 375 + 0 355 118413 15 2 0 70 0 1 17 67 14 69 8 9 33 4 6 13 3 0 2 3 0 106 chain 3807 chr2 243199373 + 159577799 159577845 MLT1D 503 - 7 53 210275 46 chain 2507 chr2 243199373 + 159595677 159595722 L1PB3 3668 + 3507 3550 233039 21 6 4 18 chain 9078 chr2 243199373 + 159598988 159599108 MER50 708 + 563 681 165173 40 1 2 56 3 0 20 chain 3675 chr2 243199373 + 159604053 159604099 MER103C 291 + 123 172 212315 6 0 3 40 chain 9639 chr2 243199373 + 159614795 159615115 MLT1B 390 + 65 390 162400 18 66 65 20 107 113 109 chain 71403 chr2 243199373 + 159636529 159637301 L1PA2 6032 - 1 773 47745 772 chain 24301 chr2 243199373 + 159642981 159643285 AluY 311 + 1 302 108652 71 0 2 32 5 0 27 2 0 88 0 4 71 2 0 6 chain 17021 chr2 243199373 + 159690105 159690311 AluSp 311 + 60 266 135534 206 chain 12122 chr2 243199373 + 159695747 159696042 MER50 708 + 441 679 151723 43 130 73 122 chain 86796 chr2 243199373 + 159696668 159698037 L1PA7 6471 - 5 1066 40855 231 9 9 88 0 1 110 4 5 319 2 3 83 1 0 13 311 0 37 0 1 161 chain 200976 chr2 243199373 + 159703461 159705756 HERVE-int 4064 + 1760 4064 19144 446 5 4 629 0 1 557 0 10 70 1 0 587 chain 346978 chr2 243199373 + 159722696 159726754 HERVE-int 4064 + 0 4064 11695 134 6 7 466 0 1 185 21 18 28 2 0 515 0 2 177 1 2 675 3 0 1186 0 10 71 1 0 587 chain 351304 chr2 243199373 + 159738699 159742754 HERVE-int 4064 + 0 4064 11560 607 0 1 203 3 0 232 0 15 465 36 11 279 1 13 327 2 1 869 0 13 369 2 0 72 1 0 587 chain 28572 chr2 243199373 + 159752387 159752699 AluYa5 310 - 1 310 90856 183 2 0 33 1 0 93 chain 23816 chr2 243199373 + 159796663 159796936 AluSc 308 + 26 299 111386 273 chain 8665 chr2 243199373 + 159799602 159799706 Tigger1 2417 + 2252 2359 167400 29 0 3 75 chain 7340 chr2 243199373 + 159831559 159831650 MER2 342 - 119 210 175154 91 chain 38318 chr2 243199373 + 159861262 159861779 MER9a3 513 - 0 513 71687 59 10 0 18 0 1 324 10 11 13 7 9 58 0 2 18 chain 24640 chr2 243199373 + 159863650 159863949 AluSp 311 - 4 303 106783 299 chain 11424 chr2 243199373 + 159874231 159874385 L1PA8 5853 + 5701 5853 154586 37 11 10 12 1 0 93 chain 12770 chr2 243199373 + 159881298 159881488 Tigger3c 601 + 330 536 149180 44 1 0 101 12 29 32 chain 7597 chr2 243199373 + 159883549 159883642 U6 107 - 2 95 173560 93 chain 468657 chr2 243199373 + 159892882 159898431 L1PA6 6164 - 8 6164 8084 742 1 0 288 4 10 129 0 1 620 0 2 233 1 3 198 0 1 231 0 2 90 1 0 327 0 7 55 0 1 17 12 4 280 0 1 588 0 1 43 1 0 6 1 595 661 0 1 509 2 1 314 0 1 86 2 1 107 chain 30171 chr2 243199373 + 159903929 159904357 MER4A1 472 + 1 461 84273 13 0 2 5 0 1 18 1 0 6 1 2 136 12 16 26 6 27 184 0 4 20 chain 29548 chr2 243199373 + 159919197 159919511 AluYb8 318 + 0 314 86424 314 chain 10682 chr2 243199373 + 159929161 159929287 L1PA4 6152 + 6024 6152 157482 120 0 2 6 chain 14788 chr2 243199373 + 159945091 159945308 MER30 238 + 0 238 141972 108 5 0 6 20 46 78 chain 26244 chr2 243199373 + 160037804 160038107 AluYf5 307 - 7 307 99042 7 2 0 116 1 0 177 chain 24239 chr2 243199373 + 160050028 160050323 AluSc 308 - 7 300 109002 6 4 0 134 0 1 73 0 1 78 chain 229980 chr2 243199373 + 160149148 160151646 L1HS 6032 - 0 6032 17308 828 0 3534 1670 chain 4238 chr2 243199373 + 160158673 160158724 L1MB3 1562 + 1361 1414 204046 35 0 2 16 chain 119638 chr2 243199373 + 160160466 160162131 L1PA10 4194 + 1480 3193 31165 40 0 1 91 1 0 28 6 8 12 8 8 26 8 10 5 2 0 50 2 0 6 10 12 238 6 10 99 2 0 98 0 4 69 0 1 156 0 24 153 0 1 39 7 16 12 0 3 234 15 18 177 1 0 64 chain 141146 chr2 243199373 + 160169875 160171530 L1PA7 6471 + 4788 6464 25964 486 0 12 335 1 4 70 3 5 99 0 4 661 chain 20822 chr2 243199373 + 160177816 160178120 L1MA2 4263 + 3809 4102 124534 54 1 0 95 1 0 6 2 1 93 8 1 16 1 0 27 chain 17097 chr2 243199373 + 160198597 160198874 L1PREC2 3366 + 2481 2762 135325 53 13 14 26 5 9 9 0 1 129 1 2 4 1 0 24 2 0 10 chain 14198 chr2 243199373 + 160200574 160200743 L1MA5A 2387 + 1746 1915 143887 169 chain 13925 chr2 243199373 + 160207420 160207578 L1PA3long 6157 + 5999 6157 144839 158 chain 530437 chr2 243199373 + 160212205 160218612 L1PA7 6471 + 3 6455 4132 146 0 1 253 0 1 204 8 7 220 10 24 288 1 2 9 1 0 55 0 4 356 0 1 106 0 4 251 0 7 420 0 2 273 4 6 291 0 1 232 0 1 132 6 10 89 0 1 297 0 1 269 7 5 25 0 3 606 0 2 216 0 1 25 0 1 75 0 4 25 1 0 30 8 7 952 4 0 370 11 10 131 chain 36944 chr2 243199373 + 160226425 160226835 L1PA5 6144 + 5728 6138 73591 410 chain 9592 chr2 243199373 + 160244543 160244647 L1PA3long 6157 + 6053 6157 162635 104 chain 15248 chr2 243199373 + 160299231 160299637 L1MB3 1562 - 180 555 140636 31 6 0 14 25 22 71 140 118 22 0 3 5 3 0 89 chain 296367 chr2 243199373 + 160328597 160332634 L1P2 5180 - 651 4608 13625 59 1 2 34 2 1 69 0 4 113 0 12 50 48 6 641 84 0 150 0 1 94 0 1 26 4 7 23 0 4 645 8 12 255 0 1 400 0 1 271 0 3 184 13 14 38 6 8 499 18 32 71 0 15 42 29 8 13 10 11 137 chain 3087 chr2 243199373 + 160340557 160340631 MER20 218 + 58 134 223153 24 27 29 23 chain 28918 chr2 243199373 + 160347949 160348257 AluYa5 310 + 0 307 89381 132 1 0 175 chain 25276 chr2 243199373 + 160353022 160353323 AluSp 311 + 9 311 103337 15 0 1 17 0 1 134 1 0 134 chain 63540 chr2 243199373 + 160356048 160357013 L1PA11 4918 - 289 1198 51226 18 60 45 12 1 0 15 44 32 19 1 0 13 2 0 68 2 0 13 2 1 65 1 0 72 1 2 495 30 8 31 chain 12160 chr2 243199373 + 160360676 160360809 L1PA3long 6157 - 1 134 151573 133 chain 30208 chr2 243199373 + 160375721 160376040 AluYb8 318 - 0 318 84168 200 1 0 118 chain 15714 chr2 243199373 + 160385430 160385634 L1PA5 6144 + 5942 6142 139230 39 17 15 139 2 0 7 chain 5764 chr2 243199373 + 160392756 160392840 HY3 101 - 1 84 187492 34 3 2 47 chain 24652 chr2 243199373 + 160414778 160415069 AluSp 311 - 23 310 106710 156 4 0 131 chain 8284 chr2 243199373 + 160420024 160420159 L1MB3 1562 + 1283 1415 169492 32 10 8 28 3 2 62 chain 304241 chr2 243199373 + 160435010 160438584 L1PA5 6144 + 2554 6138 13230 218 0 1 242 1 3 140 1 0 127 9 7 4 0 1 333 0 2 50 1 0 80 0 6 570 9 13 414 8 7 522 16 12 676 0 3 153 chain 24442 chr2 243199373 + 160450632 160450928 AluY 311 + 0 293 107846 59 10 7 227 chain 13691 chr2 243199373 + 160453074 160453379 L1PB1 5432 - 12 291 145628 14 1 0 14 0 11 11 1 0 24 2 0 14 8 5 19 18 6 6 3 0 15 1 0 27 5 0 18 1 0 15 2 1 53 2 0 5 10 6 10 1 0 5 chain 485515 chr2 243199373 + 160480469 160486345 L1PA7 6471 + 563 6470 7539 318 0 3 290 0 10 47 0 4 366 0 3 282 0 3 563 7 10 179 3 0 274 0 3 132 0 3 140 0 6 666 3 0 81 0 4 49 1 0 1125 5 0 8 5 10 321 0 1 180 7 2 824 chain 90051 chr2 243199373 + 160502159 160503226 MER11C 1089 - 15 1089 39632 9 1 2 325 0 1 420 0 4 62 0 1 250 chain 4327 chr2 243199373 + 160518213 160518289 L1MB5 1630 - 5 78 202862 6 1 0 5 1 0 11 4 3 48 chain 100715 chr2 243199373 + 160520366 160521463 L1HS 6032 - 0 1077 36576 13 20 0 1064 chain 78722 chr2 243199373 + 160521463 160522301 L1HS 6032 + 4118 4956 44061 838 chain 15732 chr2 243199373 + 160523394 160523605 L1PA8 5853 + 5645 5853 139166 34 1 0 59 7 6 16 1 0 93 chain 7818 chr2 243199373 + 160548967 160549067 Tigger2b_Pri 1066 - 910 1008 172201 14 1 0 58 1 0 26 chain 75164 chr2 243199373 + 160581201 160582129 L1PA5 6144 - 6 938 45942 106 30 31 122 1 0 595 9 13 65 chain 10608 chr2 243199373 + 160592690 160593062 L1MB8 1703 - 491 868 157788 25 88 105 7 9 0 13 4 0 76 78 81 35 10 8 27 chain 28986 chr2 243199373 + 160600487 160600798 AluYa5 310 - 0 310 89057 217 1 0 93 chain 22217 chr2 243199373 + 160676706 160677181 L1PB1 5432 + 4983 5422 119276 120 9 2 9 3 0 24 1 0 6 1 0 13 19 13 50 2 1 11 2 4 35 0 1 9 66 51 14 3 1 23 8 7 16 1 0 10 2 1 18 chain 515012 chr2 243199373 + 160678251 160684623 L1PA7 6471 + 0 6466 5673 243 0 1 8 0 7 154 3 0 60 1 0 98 3 0 150 27 32 28 0 1 5 1 0 26 14 83 6 4 0 258 13 15 35 0 4 39 0 19 1076 0 1 140 1 0 13 0 1 44 14 1 93 11 6 242 0 4 205 0 6 101 0 1 278 0 2 5 4 1 36 0 1 752 0 3 997 2 0 340 1 0 17 1 2 166 0 1 226 0 1 263 1 2 167 chain 17288 chr2 243199373 + 160704701 160705055 L1PB1 5432 + 5105 5419 134811 12 6 0 21 1 0 9 1 0 11 5 1 8 2 0 53 3 1 15 1 0 41 35 20 30 8 5 14 2 0 24 1 0 16 9 8 10 1 0 15 chain 30311 chr2 243199373 + 160725449 160725817 L1PA6 6164 + 5794 6162 83879 208 15 15 145 chain 15871 chr2 243199373 + 160739620 160739804 L1PA2 6032 + 5853 6031 138739 23 6 0 155 chain 22574 chr2 243199373 + 160740459 160740796 THE1B 368 + 0 357 117698 35 5 20 65 0 1 53 1 0 24 2 0 78 14 13 17 5 13 38 chain 124700 chr2 243199373 + 160784941 160786630 L1PB1 5432 + 3739 5326 29476 223 0 1 99 0 5 561 0 1 107 1 0 270 1 0 92 90 5 13 0 1 21 1 0 6 1 0 13 5 1 10 2 0 52 2 1 15 1 0 43 2 1 16 3 0 12 9 0 18 chain 7333 chr2 243199373 + 160798739 160798925 MER58A 224 + 0 216 175204 24 68 86 23 4 16 67 chain 46452 chr2 243199373 + 160801711 160802238 L1PA3long 6157 - 0 527 61637 271 1 2 66 1 0 188 chain 23820 chr2 243199373 + 160818437 160818706 L1PA7 6471 + 5352 5621 111360 269 chain 5348 chr2 243199373 + 160818707 160818768 L1PA7 6471 + 5621 5682 191557 61 chain 66119 chr2 243199373 + 160818768 160819549 L1PA7 6471 + 5683 6466 50043 570 0 1 203 0 1 8 chain 29591 chr2 243199373 + 160827291 160827622 L1PA7 6471 + 6138 6469 86229 331 chain 3576 chr2 243199373 + 160842657 160842703 Tigger4a 237 - 95 141 214041 46 chain 75236 chr2 243199373 + 160847981 160848809 L1PA3long 6157 - 5 832 45908 703 1 0 124 chain 5207 chr2 243199373 + 160848809 160848872 L1P1 4361 + 4266 4328 192113 39 1 0 23 chain 29541 chr2 243199373 + 160855864 160856174 AluYa5 310 - 0 310 86465 310 chain 4779 chr2 243199373 + 160890575 160890671 MER103C 291 - 113 213 197591 56 26 30 14 chain 28241 chr2 243199373 + 160905349 160905651 AluYa5 310 - 9 310 92147 175 1 0 126 chain 32615 chr2 243199373 + 160915355 160915783 MER1A 529 - 67 497 79826 171 0 1 191 18 19 48 chain 3308 chr2 243199373 + 160915970 160916010 MIR 256 - 104 144 218798 40 chain 27132 chr2 243199373 + 160916152 160916507 THE1A 353 - 0 353 95824 154 1 0 88 6 5 106 chain 33194 chr2 243199373 + 160922241 160922684 MER4A1 472 - 0 472 78898 224 8 28 99 11 18 87 0 2 14 chain 193754 chr2 243199373 + 160923021 160925545 MER4-int 2692 - 42 2618 19705 24 8 1 240 2 0 118 0 3 73 1 2 89 0 3 78 1 0 127 0 2 98 0 11 23 0 1 56 0 6 45 1 0 153 0 1 43 2 0 34 0 1 7 0 1 3 0 5 73 2 0 289 0 1 24 1 5 227 0 22 35 0 3 175 0 9 189 4 6 180 15 8 36 1 2 19 2 0 18 1 0 7 chain 33168 chr2 243199373 + 160928668 160929098 MER4A1 472 - 20 472 78957 204 4 24 194 1 0 8 0 1 4 0 2 15 chain 27919 chr2 243199373 + 160943326 160943661 L1PA6 6164 + 5832 6162 93279 324 5 0 6 chain 6426 chr2 243199373 + 160946295 160946378 LTR9 672 - 434 533 181816 18 1 17 64 chain 19984 chr2 243199373 + 160949597 160949869 MER1A 529 - 4 287 127195 54 12 15 81 0 8 125 chain 131752 chr2 243199373 + 160949894 160952608 L1MA3 4352 + 2372 4352 27684 87 7 9 117 1 0 136 1 0 4 22 20 66 5 6 86 406 0 63 17 18 7 3 0 96 1 0 142 1 0 17 296 1 63 0 4 261 0 3 122 0 1 127 0 2 58 2 0 11 0 1 45 14 19 91 6 8 29 57 27 117 4 0 22 2 0 24 8 6 21 6 4 4 0 1 10 6 2 17 1 0 5 chain 521778 chr2 243199373 + 160971027 160977191 L1HS 6032 + 0 6032 4987 256 1 0 34 40 43 63 10 13 288 0 7 64 154 10 1046 1 0 1521 0 1 2686 chain 33955 chr2 243199373 + 160977199 160977581 L1PA4 6152 + 5768 6151 77687 228 0 1 154 chain 350446 chr2 243199373 + 160989625 160993568 L1PA4 6152 + 2187 6152 11586 61 0 1 134 1 5 186 0 4 529 0 1 769 4 5 476 0 2 944 0 4 832 0 5 7 chain 515795 chr2 243199373 + 161004990 161011092 L1PA6 6164 + 0 6153 5595 196 1 0 41 0 2 279 0 2 47 1 0 223 0 17 145 0 1 534 0 1 4 2 1 736 5 8 96 0 1 221 0 11 7 4 3 594 1 0 25 4 5 592 1 0 159 0 1 526 0 11 828 0 6 830 chain 25110 chr2 243199373 + 161033795 161034097 AluY 311 + 0 298 104227 118 4 0 180 chain 541222 chr2 243199373 + 161037218 161043638 L1PA7 6471 + 16 6467 2635 182 0 1 204 0 1 245 2 3 633 1 0 473 0 1 275 0 1 501 5 8 96 0 1 552 0 11 346 0 1 1117 0 4 102 0 3 24 0 1 212 0 1 254 0 1 341 0 3 10 4 6 170 0 1 375 1 2 136 1 0 10 1 0 137 4 0 6 chain 130024 chr2 243199373 + 161045429 161046871 L1PA4 6152 + 4705 6152 28082 1436 0 5 6 chain 5167 chr2 243199373 + 161071692 161071800 Charlie4a 502 + 121 230 193386 36 32 33 40 chain 4840 chr2 243199373 + 161091768 161091827 HSMAR2 1300 + 1216 1275 196882 59 chain 21563 chr2 243199373 + 161116450 161116734 L1MA4 2864 - 215 500 121912 23 1 3 124 3 2 114 0 1 5 2 1 12 chain 4422 chr2 243199373 + 161140331 161140385 MIR 256 - 92 146 201668 54 chain 26938 chr2 243199373 + 161207207 161207502 L1PA5 6144 - 341 636 96497 295 chain 30100 chr2 243199373 + 161207503 161207852 L1PA5 6144 + 5800 6144 84493 207 1 0 129 4 0 8 chain 12515 chr2 243199373 + 161218436 161218590 Tigger1 2417 - 277 431 150182 154 chain 5042 chr2 243199373 + 161259000 161259057 MER53 195 + 108 165 194711 57 chain 26006 chr2 243199373 + 161266457 161266758 AluY 311 + 0 308 99989 70 0 6 56 0 1 175 chain 70258 chr2 243199373 + 161277658 161278457 L1PA5 6144 - 0 797 48286 112 1 0 26 1 0 659 chain 163296 chr2 243199373 + 161294772 161296620 SVA_D 2077 - 1 2077 22907 632 1 98 258 0 51 51 0 83 142 3 0 33 0 3 689 0 2 6 1 0 6 1 0 6 1 0 6 1 0 6 1 0 4 chain 134100 chr2 243199373 + 161304801 161306349 SVA_B 1603 + 0 1599 27182 19 0 10 8 0 7 830 25 27 19 4 0 46 0 36 597 chain 28964 chr2 243199373 + 161333059 161333364 AluYa5 310 - 5 310 89161 305 chain 336392 chr2 243199373 + 161381545 161385419 L1PA5 6144 - 6 3899 11988 107 1 0 240 1 0 187 3 1 214 0 3 91 0 5 37 0 3 380 0 3 29 0 1 313 0 1 166 7 13 210 4 0 249 0 2 628 0 2 7 0 3 47 2 0 20 1 0 232 0 2 629 1 0 68 chain 2613 chr2 243199373 + 161387015 161387061 Tigger2 2703 + 2393 2440 231521 12 5 6 29 chain 42435 chr2 243199373 + 161413714 161414429 L1PA14 3548 + 2780 3485 66102 158 3 1 14 2 0 47 2 0 5 2 0 105 2 0 5 5 3 13 2 0 6 1 0 84 1 0 35 11 20 56 1 0 11 6 2 17 5 17 14 1 0 5 1 0 11 16 15 32 5 0 3 1 0 7 1 0 19 chain 43298 chr2 243199373 + 161429266 161429811 MLT2A2 560 + 0 560 65054 140 0 1 53 1 4 204 0 11 147 chain 4526 chr2 243199373 + 161479315 161479367 L1PA7 6471 + 6255 6307 200487 52 chain 12953 chr2 243199373 + 161479367 161479525 L1PA7 6471 + 6308 6466 148414 158 chain 407537 chr2 243199373 + 161480084 161485226 L1P2 5180 - 5 5178 9862 39 1 0 47 1 0 526 0 1 26 0 1 267 0 3 128 0 9 436 2 0 11 1 3 175 0 4 206 0 1 109 1 0 231 1 0 22 1 2 175 0 3 205 3 6 41 3 7 157 0 1 6 1 0 16 1 0 506 0 1 4 1 0 901 0 4 23 5 15 59 0 15 209 12 11 48 1 0 68 19 0 188 0 1 7 8 7 50 5 4 24 0 5 8 14 8 143 chain 29235 chr2 243199373 + 161493495 161493958 L1MA2 4263 - 158 621 87878 47 12 6 87 11 9 142 15 12 19 12 13 56 1 12 40 1 0 20 chain 59359 chr2 243199373 + 161498978 161499676 L1PA6 6164 - 2 699 53195 314 1 0 383 chain 10451 chr2 243199373 + 161535861 161536000 L1PA8 5853 - 39 174 158484 54 1 0 19 3 1 52 1 0 9 chain 10264 chr2 243199373 + 161538113 161538290 L1MB3 1562 - 759 952 159308 18 31 43 26 0 4 102 chain 25349 chr2 243199373 + 161539283 161539564 AluY 311 + 15 296 102958 281 chain 133817 chr2 243199373 + 161569357 161570813 L1PA2 6032 + 4566 6023 27258 1320 0 1 136 chain 222251 chr2 243199373 + 161578862 161582023 L1PA8 5853 - 5 2845 17743 88 1 0 19 2 1 52 1 0 9 2 1 68 2 0 46 1 0 247 6 4 120 305 0 174 0 1 9 5 4 241 7 0 145 5 1 411 0 4 239 1 2 6 1 0 569 9 7 166 2 0 35 0 1 112 0 3 55 chain 555282 chr2 243199373 + 161613431 161619600 L1PA3long 6157 - 0 6157 795 1793 1 5 189 4 0 902 0 1 1826 0 1 1242 25 11 187 chain 537016 chr2 243199373 + 161623010 161629126 L1PA4 6152 + 0 6151 3308 445 0 13 17 0 4 550 5 2 678 0 1 590 23 8 4 1 0 74 0 4 296 0 1 148 0 4 411 9 31 879 4 0 193 1 5 946 0 4 509 0 1 333 chain 12159 chr2 243199373 + 161652305 161652482 Tigger1 2417 + 871 1071 151577 74 1 0 60 12 36 30 chain 26377 chr2 243199373 + 161652493 161652825 L1PA6 6164 + 5823 6161 98504 101 0 1 180 1 5 25 0 1 25 chain 10414 chr2 243199373 + 161652903 161653122 L1MA3 4352 + 4134 4352 158624 45 1 0 23 0 2 11 1 5 9 9 6 26 2 0 21 2 1 5 1 0 18 24 25 21 chain 554406 chr2 243199373 + 161653843 161659977 L1PA3long 6157 + 6 6142 897 119 2 0 581 0 1 1990 2 1 1973 1 0 632 1 5 515 0 1 179 7 0 9 4 11 119 chain 58518 chr2 243199373 + 161660020 161660836 Tigger1 2417 + 1465 2288 53688 92 0 3 442 0 18 46 0 3 75 26 12 14 17 13 67 0 1 37 chain 5276 chr2 243199373 + 161664457 161664514 THE1-int 844 + 549 606 192252 57 chain 48447 chr2 243199373 + 161665990 161666625 L1PA10 4194 - 44 682 60151 34 3 0 34 1 0 72 18 19 194 9 14 255 3 4 12 chain 19383 chr2 243199373 + 161678962 161679244 L1MA5 2750 - 524 804 128996 109 31 29 142 chain 5730 chr2 243199373 + 161688144 161688211 MLT2C2 476 - 409 476 187842 67 chain 2799 chr2 243199373 + 161698230 161698328 L1MB3 1562 + 1458 1555 228732 17 53 52 28 chain 13401 chr2 243199373 + 161705083 161705386 L1PB1 5432 + 5117 5390 146709 21 1 0 6 1 0 13 17 12 51 2 1 7 0 1 7 1 0 7 4 3 33 2 1 14 6 3 11 9 0 18 11 6 14 2 0 25 1 0 19 chain 555885 chr2 243199373 + 161707230 161713259 L1PA2 6032 - 0 6031 737 2168 0 1 2889 0 1 972 chain 3866 chr2 243199373 + 161714162 161714272 L1MCb 1641 - 1363 1474 209359 17 12 13 23 26 27 19 1 0 12 chain 47329 chr2 243199373 + 161717087 161717603 L1PA2 6032 + 5305 5823 60949 495 0 2 21 chain 19818 chr2 243199373 + 161730976 161731203 AluYk4 311 + 70 297 127755 227 chain 6462 chr2 243199373 + 161749762 161749857 MER53 195 + 0 97 181539 59 7 0 9 0 9 20 chain 22639 chr2 243199373 + 161756628 161756901 L1PA7 6471 - 2 276 117379 10 2 0 95 0 1 46 0 2 120 chain 105511 chr2 243199373 + 161771083 161772376 L1PA8 5853 - 0 1288 35368 93 1 0 17 1 0 53 1 0 10 1 0 69 3 1 46 1 0 557 0 3 379 1 0 60 chain 38120 chr2 243199373 + 161772387 161772851 L1PA8 5853 + 4004 4465 71953 199 0 4 127 7 0 131 chain 29672 chr2 243199373 + 161795614 161795924 AluYa5 310 - 0 310 85937 310 chain 39023 chr2 243199373 + 161805985 161806411 L1PA3long 6157 + 4176 4603 70709 32 0 1 394 chain 43217 chr2 243199373 + 161806411 161806892 L1PA3long 6157 + 4604 5085 65150 481 chain 96351 chr2 243199373 + 161806894 161807964 L1PA3long 6157 + 5088 6157 37717 735 0 1 184 5 3 146 chain 98511 chr2 243199373 + 161832085 161833231 L1PA7 6471 - 1 1168 37156 12 0 2 148 1 0 91 0 1 595 1 0 277 0 20 21 chain 25239 chr2 243199373 + 161836431 161836740 AluSp 311 - 0 311 103539 33 1 3 275 chain 81761 chr2 243199373 + 161843081 161844100 MER11A 1151 - 1 1151 42865 291 5 38 12 2 1 117 6 9 143 0 1 94 0 1 149 4 0 66 1 0 67 1 100 61 chain 11150 chr2 243199373 + 161849965 161850092 L1PA3long 6157 - 0 127 155633 127 chain 33523 chr2 243199373 + 161852529 161853082 Tigger3b 1229 + 639 1174 78363 131 47 39 41 36 33 131 8 2 122 1 0 36 chain 420607 chr2 243199373 + 161854010 161858684 L1PA3long 6157 - 0 4673 9522 948 0 1 1263 0 1 212 2 0 78 1 0 336 0 2 46 0 4 85 0 2 8 9 1 648 1 0 574 1 0 82 0 1 24 0 1 356 chain 131204 chr2 243199373 + 161858684 161860176 L1PA3long 6157 + 10 1523 27734 322 1 0 853 0 13 203 0 9 113 chain 43197 chr2 243199373 + 161863935 161864406 L1PA3long 6157 - 0 471 65177 471 chain 24848 chr2 243199373 + 161865230 161865582 THE1A 353 + 0 353 105632 66 9 10 35 1 0 24 0 1 5 1 0 59 1 0 17 1 0 96 0 3 37 chain 516125 chr2 243199373 + 161866512 161872959 L1PA7 6471 + 1 6470 5563 243 0 10 149 0 1 93 12 13 85 19 11 9 2 0 5 7 1 22 0 2 107 1 0 136 5 4 317 0 4 128 12 23 393 0 2 192 0 3 6 11 8 67 1 0 418 0 1 66 0 2 117 0 2 425 1 0 431 1 0 512 0 2 8 0 1 216 11 10 160 8 9 123 0 1 272 1 0 138 0 1 533 0 3 136 2 0 76 0 2 365 0 1 20 1 0 206 15 22 6 7 0 150 chain 10074 chr2 243199373 + 161878148 161878280 Tigger1 2417 + 54 186 160202 40 0 1 14 3 2 75 chain 22991 chr2 243199373 + 161879201 161879593 THE1D 372 - 0 372 115667 138 0 6 20 37 42 21 0 6 5 19 0 37 0 1 17 24 5 74 chain 161982 chr2 243199373 + 161881412 161883718 L1PA15 4387 + 1950 4258 23068 76 1 0 4 0 1 95 0 2 7 9 2 573 0 1 32 3 21 41 0 1 69 3 6 77 1 0 202 3 0 91 0 4 15 0 3 14 0 1 277 17 16 74 1 0 4 1 2 151 24 30 44 2 0 46 1 0 33 50 49 9 3 2 79 1 0 21 6 5 37 2 0 18 1 0 21 14 0 7 7 6 39 chain 7364 chr2 243199373 + 161912708 161912802 LTR10E 629 + 0 95 175013 10 0 1 84 chain 43126 chr2 243199373 + 161917726 161918274 MLT2A2 560 + 7 560 65262 75 0 1 31 6 9 195 0 1 241 chain 101553 chr2 243199373 + 161928797 161930093 L1PA8 5853 - 0 1293 36384 5 0 1 84 1 0 19 1 0 27 1 0 24 22 23 61 3 1 36 9 8 479 1 3 73 2 0 283 0 1 165 chain 43261 chr2 243199373 + 161930099 161930643 L1PA8 5853 + 4004 4551 65102 192 4 5 8 1 0 5 0 2 123 0 1 211 chain 11934 chr2 243199373 + 161937621 161937766 L1PA8 5853 - 0 144 152463 108 2 1 35 chain 79354 chr2 243199373 + 161937878 161938819 L1PA7 6471 - 2 949 43884 150 2 0 5 0 1 608 2 6 82 0 3 92 chain 164964 chr2 243199373 + 161954335 161956269 L1PA7 6471 - 12 1969 22657 466 0 3 197 1 0 100 0 3 61 0 7 421 0 3 358 1 0 102 0 1 63 0 8 164 chain 18846 chr2 243199373 + 161987345 161987609 AluSc8 310 + 2 303 130525 130 15 49 38 0 1 41 1 2 20 0 1 19 chain 160495 chr2 243199373 + 161997847 161999999 L1PA8 5853 - 0 2171 23270 92 2 1 16 5 4 16 48 54 62 3 1 43 1 0 68 0 1 8 4 5 287 27 29 155 0 2 100 7 8 38 0 2 43 0 1 405 1 2 44 5 4 28 2 0 175 0 2 430 0 8 37 chain 236496 chr2 243199373 + 162000000 162003309 L1PA10 4194 - 771 4019 16953 285 0 1 94 0 1 142 6 8 158 0 1 51 1 5 48 0 1 16 3 2 122 0 4 84 10 13 161 0 4 440 8 0 15 19 0 280 16 6 144 0 5 47 0 8 646 6 9 95 0 3 17 2 1 5 0 1 10 10 12 75 17 8 13 5 0 12 1 0 9 1 0 5 1 0 21 2 0 7 62 34 7 1 0 16 2 0 21 1 0 5 5 4 9 33 25 6 3 0 12 2 0 14 chain 26867 chr2 243199373 + 162042094 162042381 L1PA2 6032 + 5740 6027 96752 287 chain 6936 chr2 243199373 + 162057316 162057395 MER41B 635 - 88 167 177927 79 chain 4481 chr2 243199373 + 162100820 162100920 MER53 195 + 5 106 201006 45 3 0 9 30 34 13 chain 12384 chr2 243199373 + 162140316 162140531 MER30 238 - 0 238 150694 115 8 32 44 35 34 13 chain 521063 chr2 243199373 + 162142713 162148820 L1PA5 6144 + 0 6140 5047 120 0 14 20 12 24 126 6 10 747 0 1 103 13 4 67 0 1 1064 23 6 18 1 0 1183 0 1 173 1 0 167 4 0 659 0 1 536 0 5 244 1 4 655 0 21 16 1 2 120 1 2 26 chain 11458 chr2 243199373 + 162160277 162160696 MER101 471 + 7 434 154474 7 1 0 107 131 74 18 22 70 11 12 13 21 62 79 27 chain 7849 chr2 243199373 + 162206703 162206883 MER53 195 + 0 195 172004 63 9 10 24 35 44 24 10 15 15 chain 76380 chr2 243199373 + 162291494 162292646 L1PA15 4387 - 131 1271 45274 39 4 3 7 4 0 22 1 0 46 10 9 26 1 0 58 23 31 83 14 13 6 2 0 23 2 0 63 21 14 317 0 1 347 9 8 24 chain 51922 chr2 243199373 + 162313209 162313808 L1PA5 6144 + 5547 6142 57668 588 4 0 7 chain 313281 chr2 243199373 + 162315359 162319338 L1P3 4156 - 42 4125 12879 7 2 0 228 0 2 39 1 0 328 3 11 7 7 0 3 1 0 98 0 1 45 15 21 132 0 7 211 1 0 21 10 96 227 6 8 115 3 4 25 0 1 451 1 0 630 1 4 135 7 7 848 0 3 78 1 0 55 18 17 69 2 1 148 chain 32615 chr2 243199373 + 162331615 162332066 L1PA10 4194 + 3719 4161 79827 9 1 0 353 45 37 43 chain 224949 chr2 243199373 + 162369424 162372304 L1PA7 6471 + 0 6458 17600 134 0 39 42 1 2 195 16 2 264 27 40 768 1 0 95 7 3544 112 0 1 383 1 0 27 1 2 50 0 2 271 0 1 150 7 8 92 2 0 234 chain 10813 chr2 243199373 + 162373482 162373712 L1PB1 5432 - 10 210 156926 18 1 0 12 1 0 17 6 5 24 2 0 14 1 0 5 3 1 18 18 8 4 1 0 15 1 0 44 10 0 15 chain 274953 chr2 243199373 + 162382733 162385954 L1PA4 6152 - 0 6152 14926 13 0 3 751 0 1 222 6 16 1096 1 2 206 0 1 12 8 5 212 2 1 55 0 1923 538 0 996 99 chain 15763 chr2 243199373 + 162386687 162387047 THE1B 368 + 0 368 139077 47 33 40 15 32 33 34 1 0 17 8 0 11 31 0 9 4 44 118 chain 27606 chr2 243199373 + 162388063 162388398 L1PA2 6032 + 5699 6032 94331 175 1 8 7 7 0 130 2 0 13 chain 492690 chr2 243199373 + 162392722 162398201 L1PA3long 6157 + 29 6157 7237 65 0 526 156 0 128 258 0 3 27 10 1 3102 6 7 1855 chain 23922 chr2 243199373 + 162418894 162419262 THE1B 368 + 3 368 110796 10 2 0 27 6 11 56 13 14 22 1 2 27 2 1 26 7 0 169 chain 116356 chr2 243199373 + 162422197 162423521 L1PA5 6144 - 0 1323 32297 11 3 1 130 0 1 1180 chain 125153 chr2 243199373 + 162423521 162424959 L1PA5 6144 + 3371 4813 29344 670 1 2 152 0 2 85 0 1 530 chain 187859 chr2 243199373 + 162446544 162448651 L1PA4 6152 - 9 2132 20253 141 8 7 961 0 15 427 0 1 528 0 1 42 chain 59721 chr2 243199373 + 162509376 162510076 L1PA7 6471 - 14 719 52982 298 0 1 147 0 1 151 0 3 104 chain 8026 chr2 243199373 + 162543277 162543378 MER41A 554 - 93 194 170899 101 chain 4146 chr2 243199373 + 162545357 162545406 Tigger3c 601 + 43 92 205304 49 chain 32937 chr2 243199373 + 162552424 162552807 L1PA5 6144 - 0 383 79309 148 1 0 25 0 1 209 chain 233158 chr2 243199373 + 162552817 162555519 L1PA3long 6157 - 0 2702 17132 923 0 1 598 1 0 428 0 1 595 1 0 156 chain 182878 chr2 243199373 + 162573269 162577334 L1PA10 4194 - 51 2545 20691 26 3 0 33 1 2 40 0 8 171 0 1 203 6 10 51 1 0 36 0 1 22 0 2 118 0 1 57 1 0 404 0 1 16 0 1 32 0 1 4 49 32 104 0 12 20 0 1 103 0 1 17 5 2 6 0 2 77 6 0 122 3 5 172 1 5 171 0 8 54 1591 0 339 chain 139895 chr2 243199373 + 162575414 162576993 L1PA4 6152 - 0 1588 26155 509 0 2 333 0 4 18 0 4 653 1 0 65 chain 116712 chr2 243199373 + 162589157 162590717 THE1A-int 1579 + 45 1579 32220 61 0 2 160 1 0 186 2 3 4 1 0 33 2 1 7 0 7 161 3 4 326 0 1 74 44 7 296 0 1 39 0 1 160 chain 3425 chr2 243199373 + 162597797 162597834 tRNA-Tyr-TAC 38 - 1 38 216676 37 chain 58233 chr2 243199373 + 162599252 162600074 L1MA3 4352 - 749 1559 53845 6 7 0 95 21 15 40 0 2 64 5 6 88 1 0 67 11 10 417 chain 11219 chr2 243199373 + 162616147 162616361 L1MA9 1812 - 421 621 155348 25 47 40 53 8 1 81 chain 10041 chr2 243199373 + 162647324 162647470 L1PA11 4918 + 4361 4504 160378 114 2 0 13 1 0 16 chain 2927 chr2 243199373 + 162649873 162649933 L1MA8 2339 - 150 207 226560 26 16 13 18 chain 5960 chr2 243199373 + 162652123 162652196 L1MA10 1535 - 183 256 185600 73 chain 122667 chr2 243199373 + 162661836 162663409 THE1B-int 1605 - 0 1605 30176 368 0 10 90 1 0 116 0 2 560 18 43 208 4 0 208 chain 226485 chr2 243199373 + 162672990 162675545 L1PA4 6152 - 0 2560 17511 1133 0 1 713 1 0 18 5 6 92 0 3 412 0 1 181 chain 419767 chr2 243199373 + 162743316 162748421 L1PA7 6471 - 14 5121 9537 448 34 10 150 4 10 139 0 2 74 0 3 404 0 1 5 0 1 101 33 43 47 1 2 33 1 0 308 1 5 142 0 4 39 0 1 265 0 1 221 2 4 439 1 2 50 1 0 17 7 2 573 1 0 520 8 3 44 0 1 749 1 2 242 chain 147217 chr2 243199373 + 162751425 162753057 L1PA3long 6157 - 0 1632 25001 338 0 1 1183 1 0 110 chain 11580 chr2 243199373 + 162753057 162753181 L1PA3long 6157 + 4406 4530 153191 124 chain 24541 chr2 243199373 + 162763320 162763594 AluY 311 + 38 311 107303 85 2 1 187 chain 26232 chr2 243199373 + 162764822 162765106 L1PA4 6152 + 5867 6151 99087 284 chain 21202 chr2 243199373 + 162765521 162765752 L1PA4 6152 + 5920 6151 123207 231 chain 27161 chr2 243199373 + 162780044 162780345 L1PA4 6152 + 5851 6152 95717 301 chain 196566 chr2 243199373 + 162781674 162783953 L1P1 4361 - 834 3103 19460 226 4 0 199 0 1 4 1 0 715 0 4 72 1 0 4 17 8 1036 chain 100040 chr2 243199373 + 162783953 162785037 L1PA3long 6157 + 5068 6152 36736 1084 chain 10866 chr2 243199373 + 162909844 162910055 MER30 238 - 0 238 156715 35 3 6 34 1 7 12 7 5 22 0 18 57 25 27 15 chain 6921 chr2 243199373 + 162936654 162936748 MLT1C 463 + 356 451 178022 54 1 2 39 chain 3002 chr2 243199373 + 162945258 162945290 MER106A 234 - 74 106 225011 32 chain 42796 chr2 243199373 + 162951614 162952098 L1PA5 6144 - 7 489 65665 453 2 0 29 chain 6457 chr2 243199373 + 162952831 162953051 MLT1A0 366 - 43 268 181586 50 6 0 6 115 125 25 0 1 18 chain 3877 chr2 243199373 + 162965294 162965338 MER63B 433 - 351 395 209205 44 chain 23893 chr2 243199373 + 162978279 162978557 AluY 311 + 11 294 110937 65 0 6 88 1 0 124 chain 2994 chr2 243199373 + 163092074 163092108 LTR12C 1709 + 682 716 225135 34 chain 79942 chr2 243199373 + 163093733 163094731 L1PA7 6471 - 6 1023 43624 6 2 0 54 7 6 78 8 0 7 0 7 8 1 2 142 6 24 229 7 11 443 chain 7015 chr2 243199373 + 163112050 163112168 MER33 330 + 17 129 177362 79 1 0 4 14 9 20 chain 29945 chr2 243199373 + 163127776 163128127 L1PA5 6144 + 5793 6144 84984 351 chain 144775 chr2 243199373 + 163178919 163180512 L1PA3long 6157 - 1 1593 25357 4 1 0 1588 chain 128241 chr2 243199373 + 163181300 163183002 HUERS-P2-int 2744 - 2 1717 28510 28 2 0 11 2 0 5 12 9 29 11 10 35 1 0 14 4 2 10 1 0 7 2 1 37 7 0 104 4 0 181 21 1 191 0 10 35 0 44 178 1 2 241 0 2 528 chain 16229 chr2 243199373 + 163184442 163184628 LTR12C 1709 + 0 186 137674 186 chain 15663 chr2 243199373 + 163255887 163256063 L1PA5 6144 - 4 180 139387 176 chain 302990 chr2 243199373 + 163309465 163313381 L1PA8 5853 - 0 3867 13281 93 1 0 16 1 0 55 16 10 71 2 0 44 1 0 354 15 16 146 0 1 36 0 2 19 0 3 140 9 10 255 0 4 238 1 0 211 0 15 513 8 11 203 0 2 5 12 8 381 1 0 24 0 2 428 0 1 38 90 20 195 0 3 245 1 0 21 0 1 27 chain 140281 chr2 243199373 + 163326182 163327772 SVA_D 2077 + 0 2077 26102 555 0 40 296 2 271 25 0 1 30 0 2 9 0 177 656 2 0 15 chain 150288 chr2 243199373 + 163328033 163329729 L1PA5 6144 + 4417 6132 24566 113 0 1 1244 8 26 331 chain 93980 chr2 243199373 + 163382492 163383570 MER11C 1089 - 10 1089 38355 89 0 2 411 5 4 573 chain 10660 chr2 243199373 + 163394624 163394810 MER30 238 + 0 196 157562 16 16 15 63 26 37 65 chain 61747 chr2 243199373 + 163398764 163399446 L1PA3long 6157 - 2 684 52014 682 chain 31609 chr2 243199373 + 163417876 163418237 L1PA7 6471 - 473 835 81467 241 0 1 120 chain 39332 chr2 243199373 + 163418244 163418729 L1PA7 6471 + 5983 6466 70278 153 0 1 170 1 4 5 3 0 143 3 0 7 chain 164291 chr2 243199373 + 163425385 163427220 L1HS 6032 - 2358 4185 22748 86 8 0 1741 chain 212075 chr2 243199373 + 163427220 163429562 L1PA3long 6157 + 3809 6152 18355 482 0 1 1860 chain 4758 chr2 243199373 + 163445309 163445373 L1MA5A 2387 - 87 150 197828 4 1 0 59 chain 133921 chr2 243199373 + 163540276 163541865 L1PA7 6471 + 4880 6470 27232 62 0 1 6 1 0 110 3 0 562 1 0 79 0 2 422 0 1 82 0 1 104 1 2 156 chain 2084 chr2 243199373 + 163544117 163544154 MER63B 433 + 342 379 237786 11 1 2 4 1 0 20 chain 123911 chr2 243199373 + 163660663 163662522 L1PB3 3668 + 1764 3595 29729 81 0 2 21 0 4 58 0 8 55 1 0 23 1 0 96 8 0 6 16 0 209 20 21 24 11 6 93 16 22 79 0 11 84 1 0 65 0 2 6 18 17 157 0 1 70 3 0 20 1 0 209 0 1 6 1 0 70 1 0 91 3 5 4 1 0 87 20 4 18 2 0 3 1 0 25 3 1 37 7 3 13 1 0 13 chain 72896 chr2 243199373 + 163711778 163712620 L1PA6 6164 - 493 1340 47072 379 0 5 463 chain 34247 chr2 243199373 + 163712620 163713048 L1PA6 6164 + 5722 6160 77285 75 0 8 200 7 8 82 2 3 62 chain 13853 chr2 243199373 + 163716190 163716380 MER30 238 + 25 238 145056 81 5 25 65 0 3 39 chain 113935 chr2 243199373 + 163720918 163722430 THE1C-int 1605 - 15 1572 33109 207 5 6 381 1 0 5 0 1 21 14 0 9 13 7 120 0 5 284 1 2 75 15 22 94 3 0 5 1 4 166 0 54 64 4 1 24 chain 135130 chr2 243199373 + 163734903 163736573 L1PA7 6471 + 4784 6467 26985 181 1 0 655 3 2 685 0 1 26 0 8 51 0 7 57 1 0 10 chain 159337 chr2 243199373 + 163756066 163758261 L1PB1 5432 - 15 2168 23425 13 1 0 13 1 0 21 1 0 24 51 44 6 2 0 16 1 0 44 1 0 15 2 1 53 31 17 6 0 6 24 37 11 472 0 2 77 0 1 129 17 16 270 0 5 399 1 0 204 25 26 238 chain 20960 chr2 243199373 + 163758261 163758522 L1PB1 5432 + 2967 3228 123210 261 chain 5302 chr2 243199373 + 163784287 163784388 Tigger3c 601 + 10 110 192007 19 27 26 55 chain 24192 chr2 243199373 + 163804800 163805083 AluYf5 307 + 0 293 109265 132 1 0 13 0 11 137 chain 148985 chr2 243199373 + 163816443 163818514 L1PA8 5853 + 3799 5853 24757 233 0 1 182 11 9 259 0 1 6 0 1 151 22 0 288 3 4 75 0 3 347 8 9 179 18 17 43 14 12 40 41 39 42 2 1 19 4 3 24 23 29 37 chain 245506 chr2 243199373 + 163842218 163844940 L1PA4 6152 + 3427 6152 16484 1208 1 0 669 0 4 844 chain 3438 chr2 243199373 + 163853075 163853128 MLT1B 390 + 27 89 216437 25 3 12 25 chain 431402 chr2 243199373 + 163867866 163873967 L1PA8 5853 - 3 5803 9283 64 0 1 25 1 0 19 2 1 47 6 5 80 2 0 41 36 274 101 0 3 105 0 2 467 1 0 245 0 1 302 5 13 48 0 1 41 1 2 6 1 0 282 0 9 36 1 0 42 1 2 677 1 6 20 6 5 620 547 24 15 2 1 194 1 2 259 0 3 5 13 10 450 0 1 435 2 0 549 14 18 173 81 41 5 2 0 22 chain 45306 chr2 243199373 + 163871198 163871715 MER9a1 513 + 0 513 62710 446 4 0 67 chain 2578 chr2 243199373 + 163877665 163877805 L1MB7 1623 - 291 431 231936 9 1 0 20 66 61 17 11 17 16 chain 117963 chr2 243199373 + 163882597 163883992 LTR12C 1709 + 0 1709 31817 153 4 0 54 1 0 370 2 1 221 3 319 106 0 4 481 chain 30299 chr2 243199373 + 163898067 163898450 MLT2A1 477 + 0 386 83916 169 1 5 149 1 0 63 chain 19386 chr2 243199373 + 163912899 163913200 L1PA8 5853 + 5559 5853 128986 5 1 0 46 2 0 67 13 11 46 8 7 19 7 6 87 chain 56913 chr2 243199373 + 163923028 163923716 LTR12_ 688 + 0 688 54587 142 1 2 369 1 0 175 chain 317217 chr2 243199373 + 163923744 163927710 HERV9-int 5642 + 0 4812 12716 23 13 13 162 1 2 220 0 3 5 3 0 168 21 15 232 10 0 264 83 4 240 1 0 123 1 2 110 0 1 1124 0 2 297 7 942 47 6 8 805 chain 48005 chr2 243199373 + 163929238 163929849 LTR12_ 688 + 0 688 60487 88 1 42 16 0 24 117 0 2 151 4 15 58 1 0 175 chain 26197 chr2 243199373 + 163954092 163954448 THE1A 353 + 0 353 99216 109 2 1 9 1 0 74 6 5 155 chain 45831 chr2 243199373 + 163961161 163961764 L1PA8 5853 - 0 597 62194 92 2 1 17 5 4 38 26 23 48 0 1 21 2 0 44 1 0 95 0 1 212 chain 25770 chr2 243199373 + 163980358 163980642 L1PA5 6144 - 1015 1299 100602 284 chain 84887 chr2 243199373 + 163980642 163981614 L1PA5 6144 + 5149 6128 41561 148 0 4 91 0 3 478 1 0 12 1 2 241 chain 39657 chr2 243199373 + 164002531 164003047 MER9a3 513 - 0 513 69815 79 0 1 117 7 0 60 1 0 64 12 13 68 0 1 95 0 2 13 chain 89328 chr2 243199373 + 164003047 164004185 MER61-int 3695 + 1381 2583 39873 16 0 4 198 0 1 71 0 1 33 0 57 369 0 2 112 1 0 338 chain 19729 chr2 243199373 + 164018504 164018761 MER51A 677 - 16 273 128016 125 0 1 22 2 1 108 chain 38597 chr2 243199373 + 164093459 164093945 L1PA7 6471 - 17 506 71295 139 1 0 30 1 0 4 0 1 148 0 1 23 0 2 103 0 1 37 chain 9230 chr2 243199373 + 164098343 164098539 L1M3e 1964 - 1767 1962 164392 21 50 48 81 11 12 33 chain 44608 chr2 243199373 + 164115331 164115844 MER9a2 513 - 0 513 63471 513 chain 24692 chr2 243199373 + 164124560 164124847 AluY 311 + 0 282 106481 130 5 0 152 chain 42967 chr2 243199373 + 164127353 164127945 L1PA8 5853 - 0 580 65451 43 11 4 17 0 1 28 1 0 16 2 1 38 13 12 14 2 1 24 0 1 43 2 0 46 1 0 291 chain 141973 chr2 243199373 + 164138724 164140383 L1P1 4361 + 2682 4341 25827 95 0 2 422 1 2 947 1 0 155 1 0 23 2 1 12 chain 23554 chr2 243199373 + 164141241 164141585 THE1B 368 - 0 368 112826 125 35 45 20 7 6 113 0 15 44 chain 115800 chr2 243199373 + 164234717 164236136 L1PA8A 6298 - 7 1430 32527 39 3 5 54 2 3 12 2 1 605 0 2 76 1 5 446 4 0 175 chain 56301 chr2 243199373 + 164306758 164307475 LTR12 884 + 0 884 54963 208 2 135 12 0 22 65 2 0 11 0 2 115 3 7 149 4 12 146 chain 48612 chr2 243199373 + 164352009 164352629 L1PA10 4194 + 3521 4141 60023 73 0 1 16 0 1 31 3 5 458 2 1 9 3 0 25 chain 523462 chr2 243199373 + 164353897 164360359 L1PA7 6471 + 0 6469 4816 140 0 3 200 0 1 67 0 1 12 24 18 229 0 2 43 0 1 150 1 10 4 0 1 232 7 12 36 3 4 190 1 0 79 0 1 107 0 7 11 8 7 65 0 2 616 7 9 332 0 1 45 1 2 413 6 5 147 2 0 298 1 0 326 1 0 126 0 2 47 3 0 645 19 1 15 0 8 414 16 4 523 0 3 13 0 1 117 0 1 720 chain 32356 chr2 243199373 + 164363046 164363615 L1MA3 4352 - 1576 2125 80265 51 0 1 154 96 72 8 0 5 42 7 8 17 6 5 67 1 0 34 1 0 85 chain 26842 chr2 243199373 + 164381841 164382220 L1PREC2 3366 - 2096 2480 96838 12 20 21 197 0 5 53 0 1 63 5 3 29 chain 17365 chr2 243199373 + 164394546 164394932 THE1C 375 + 0 375 134612 15 2 0 32 0 9 12 49 50 54 84 65 138 chain 3402 chr2 243199373 + 164400539 164400588 L1MB8 1703 - 1241 1284 217029 6 6 0 37 chain 37502 chr2 243199373 + 164434060 164434562 MLT2A2 560 + 0 560 72809 180 1 0 45 6 7 76 0 32 22 0 12 15 1 0 13 0 11 137 0 4 6 chain 18912 chr2 243199373 + 164506906 164507161 L1PA7 6471 - 6 261 130334 6 3 0 42 1 0 26 0 1 66 2 4 92 0 1 17 chain 27834 chr2 243199373 + 164518108 164518463 THE1A 353 + 0 353 93579 106 6 5 87 1 0 155 chain 54361 chr2 243199373 + 164518463 164519198 THE1A-int 1579 + 0 742 56127 106 1 4 59 2 1 5 0 7 11 6 0 143 0 2 102 0 2 76 0 4 193 4 0 27 chain 16120 chr2 243199373 + 164639346 164639676 L1MA3 4352 - 0 308 137994 21 3 0 3 1 0 11 1 0 28 12 10 19 9 7 21 4 0 119 44 35 34 chain 151973 chr2 243199373 + 164645735 164647451 L1PA5 6144 + 4420 6137 24340 34 0 1 839 1 0 164 0 1 678 chain 14227 chr2 243199373 + 164665320 164665496 Tigger3a 397 - 64 241 143805 115 0 1 61 chain 131000 chr2 243199373 + 164672446 164673893 L1PA3long 6157 - 0 1447 27862 1447 chain 125014 chr2 243199373 + 164678563 164680570 L1MA1 4479 - 317 2286 29389 11 1 0 8 5 4 16 4 0 16 5 3 26 8 7 82 1 11 9 1 0 14 16 12 79 0 6 6 10 0 7 2 0 5 15 14 71 1 0 16 2 0 24 1 0 144 1 3 6 0 9 34 2 0 131 3 0 13 0 5 59 10 5 10 1 0 33 7 1 11 2 1 13 6 7 55 4 0 17 2 0 69 0 1 103 2 0 27 1 0 90 19 18 29 0 1 16 1 0 33 2 0 9 5 9 19 0 1 65 2 1 187 1 4 101 12 0 48 5 0 102 1 0 32 chain 6348 chr2 243199373 + 164695234 164695313 MLT1D 503 + 0 79 182396 79 chain 25094 chr2 243199373 + 164710383 164710680 L1PA6 6164 - 5 300 104328 5 2 0 290 chain 59796 chr2 243199373 + 164710680 164711357 L1PA6 6164 + 5134 5812 52933 424 0 1 253 chain 10141 chr2 243199373 + 164715248 164715363 L1PA2 6032 - 3 118 159892 115 chain 32486 chr2 243199373 + 164722897 164723477 L1PA13 3608 + 2914 3488 80055 5 0 2 52 0 3 96 55 56 13 33 32 20 0 1 4 1 0 75 2 0 60 6 5 53 1 0 5 2 0 47 2 0 5 3 1 19 1 0 20 chain 9717 chr2 243199373 + 164737113 164737354 MER33 330 + 41 284 161999 50 52 58 28 43 39 68 chain 121503 chr2 243199373 + 164765852 164771378 LTR12C 1709 + 0 1709 30538 64 23 26 285 0 5 7 5 0 74 12 13 10 7 5 84 5 4 141 1 0 119 1 0 35 5 7 62 3815 0 169 4 0 6 4 2 106 0 4 349 10 0 9 0 10 29 1 0 84 chain 2660 chr2 243199373 + 164766822 164766855 LTR12C 1709 + 1053 1086 230905 33 chain 37597 chr2 243199373 + 164766881 164767408 LTR12C 1709 + 1118 1709 72688 97 44 13 212 0 101 71 9 4 9 1 0 84 chain 54060 chr2 243199373 + 164769939 164770594 LTR12C 1709 + 0 650 56319 222 2 0 77 1 2 157 10 6 186 chain 4313 chr2 243199373 + 164778331 164778394 MLT1A0 366 - 290 355 203064 26 0 1 23 1 2 13 chain 3735 chr2 243199373 + 164778489 164778530 L1ME1 1623 - 353 394 211381 41 chain 63377 chr2 243199373 + 164820313 164821117 LTR12 884 - 15 883 51290 458 12 33 37 0 1 49 0 2 171 0 41 43 10 9 24 chain 52867 chr2 243199373 + 164875972 164876782 L1PB1 5432 - 8 782 57091 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 23 12 10 0 1 4 1 0 44 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 1 0 11 10 5 448 chain 52374 chr2 243199373 + 164943943 164944518 L1PA4 6152 - 1 576 57377 575 chain 21925 chr2 243199373 + 164944518 164944760 L1PA4 6152 + 5291 5533 120521 242 chain 8247 chr2 243199373 + 164965091 164965183 L1PA5 6144 - 13 105 169700 92 chain 73754 chr2 243199373 + 164977447 164978228 L1HS 6032 - 1923 2704 46589 781 chain 178292 chr2 243199373 + 164978228 164980132 L1HS 6032 + 4127 6031 21137 1904 chain 4916 chr2 243199373 + 164993420 164993480 MER5A1 166 + 35 95 196101 60 chain 13980 chr2 243199373 + 165019308 165019476 AluSc5 308 - 27 195 144650 168 chain 28007 chr2 243199373 + 165026479 165026778 AluYa5 310 - 12 310 92977 172 1 0 126 chain 28423 chr2 243199373 + 165028344 165028720 MLT2A1 477 - 95 477 91497 199 0 1 4 1 0 6 0 4 14 12 14 140 chain 388321 chr2 243199373 + 165028720 165033641 HERVL-int 5654 - 0 4912 10502 179 0 8 234 32 8 336 18 11 153 0 7 279 25 29 664 5 8 5 3 0 163 1 2 506 0 1 52 1 2 27 0 2 288 6 5 465 7 4 501 1 0 536 0 1 217 0 1 112 5 6 100 chain 7638 chr2 243199373 + 165033641 165033733 MLT2A2 560 - 468 560 173309 92 chain 26285 chr2 243199373 + 165098204 165098545 THE1B 368 - 0 368 98883 180 0 13 7 1 0 113 0 15 40 chain 513254 chr2 243199373 + 165117763 165123642 L1PA4 6152 + 6 6140 5858 148 0 1 102 0 1 178 0 133 7 1 0 122 7 0 73 1 129 216 5 6 2234 20 12 990 0 2 182 0 3 360 1 2 782 0 1 450 chain 110989 chr2 243199373 + 165123856 165125422 THE1B-int 1605 + 0 1585 33933 192 14 15 216 3 28 7 1 0 5 0 1 157 16 18 28 43 38 6 1 0 62 1 2 200 0 3 95 12 4 187 5 6 315 chain 303660 chr2 243199373 + 165147049 165150690 L1PA7 6471 + 2817 6467 13262 28 1 0 65 0 1 458 0 8 49 1 2 69 1 0 1236 1 0 178 0 2 42 2 1 252 2 0 250 0 1 162 1 0 12 0 1 822 0 2 9 chain 27543 chr2 243199373 + 165152335 165152762 LTR7B 505 + 0 497 94522 56 1 0 49 0 10 60 0 38 12 3 27 26 0 2 38 2 3 41 1 0 24 9 7 47 15 14 43 chain 297085 chr2 243199373 + 165152770 165156397 HERVH-int 3825 + 0 3825 13582 216 1 8 140 1 0 169 69 0 37 1 0 10 1 0 24 1 52 41 43 0 59 0 1 6 0 2 13 0 3 216 2 1 685 8 33 298 0 13 1093 8 218 256 4 6 225 chain 2261 chr2 243199373 + 165153481 165153519 HERVH-int 3825 + 618 693 223042 1 1 0 12 3 0 5 0 41 16 chain 25806 chr2 243199373 + 165157647 165158070 LTR7B 505 + 0 497 100843 105 0 10 69 35 11 27 10 99 42 1 0 25 4 5 48 14 13 43 chain 3662 chr2 243199373 + 165203171 165203211 MLT2A2 560 - 1 41 212548 40 chain 6755 chr2 243199373 + 165208567 165208904 MLT1C 463 - 15 428 179283 28 9 10 17 195 269 17 5 7 46 1 0 19 chain 29985 chr2 243199373 + 165217672 165218020 L1PA4 6152 + 5777 6137 84856 104 0 12 244 chain 18144 chr2 243199373 + 165227636 165227955 THE1B 368 - 0 313 132481 16 46 46 114 2 0 15 1 0 5 7 6 24 1 0 39 1 0 48 chain 5654 chr2 243199373 + 165258230 165258372 L1MA1 4479 + 4062 4190 188527 12 12 11 22 3 1 34 1 0 9 1 0 11 4 2 8 7 0 18 chain 24042 chr2 243199373 + 165307381 165307653 AluSc 308 + 28 300 110103 272 chain 45037 chr2 243199373 + 165315669 165316151 LTR7 482 + 0 482 63007 482 chain 291129 chr2 243199373 + 165316153 165319656 HERVH-int 3825 + 0 3816 13948 489 2 0 11 29 85 19 29 0 10 5 42 42 2 1 57 1 2 5 0 2 13 0 3 134 0 3 684 0 4 79 4 31 359 0 1 220 0 1 823 8 218 478 chain 302062 chr2 243199373 + 165373018 165377979 L1PB1 5432 + 1082 5391 13320 126 0 22 133 646 3 24 17 20 43 8 0 166 0 1 162 2 0 38 13 12 306 1 2 358 3 0 25 0 1 43 1 0 173 0 2 77 0 1 4 8 6 12 3 0 164 0 1 5 1 0 219 7 19 52 0 1 268 7 8 131 14 11 425 10 17 6 1 0 34 0 3 8 2 1 136 11 10 121 0 1 147 4 0 84 1 0 21 1 0 4 0 1 64 3 5 6 3 0 163 0 5 120 107 87 29 1 0 13 5 4 45 1 0 15 25 15 13 2 0 5 21 19 22 1 0 21 chain 19970 chr2 243199373 + 165373531 165373892 THE1B 368 - 1 368 127235 37 11 2 75 40 55 29 1 0 84 22 22 11 4 5 47 chain 6695 chr2 243199373 + 165399829 165399999 L1PA16 3655 + 3374 3503 179727 36 2 0 23 67 28 42 chain 34539 chr2 243199373 + 165415823 165416406 L1PB1 5432 - 8 564 76849 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 5 15 14 18 18 9 4 1 0 15 1 0 44 1 0 16 2 1 52 2 0 9 7 3 12 1 0 7 1 0 23 1 0 5 7 8 103 0 1 129 chain 18393 chr2 243199373 + 165426586 165426810 AluSc8 310 + 83 309 131815 49 0 3 50 2 0 98 0 1 25 chain 74823 chr2 243199373 + 165484661 165485524 L1PA4 6152 - 0 870 46101 149 3 6 689 0 4 22 chain 29537 chr2 243199373 + 165486335 165486646 AluYb8 318 - 7 318 86492 311 chain 20576 chr2 243199373 + 165489969 165490228 AluSp 311 - 43 301 125369 122 11 10 126 chain 24034 chr2 243199373 + 165490259 165490552 AluSc5 308 - 0 293 110144 293 chain 6923 chr2 243199373 + 165496876 165497025 L1PA16 3655 - 70 217 178011 9 3 0 69 43 44 25 chain 26059 chr2 243199373 + 165504565 165504921 THE1B 368 + 1 368 99797 12 2 0 24 0 5 65 2 3 65 1 0 131 3 11 51 chain 28387 chr2 243199373 + 165514420 165514756 LTR17 781 - 455 781 91635 27 10 0 299 chain 93099 chr2 243199373 + 165515070 165516121 HERV17-int 4347 - 0 1052 38630 503 7 8 541 chain 29540 chr2 243199373 + 165528926 165529239 AluYb8 318 + 0 312 86479 126 1 0 186 chain 18502 chr2 243199373 + 165536198 165536444 L1PA7 6471 + 6204 6458 131488 26 0 12 55 1 2 18 5 0 141 chain 5271 chr2 243199373 + 165602821 165602886 U3 216 + 0 65 192309 65 chain 4236 chr2 243199373 + 165622711 165622761 L1MB8 1703 - 341 391 204081 50 chain 14384 chr2 243199373 + 165624826 165625031 MER30 238 + 0 234 143259 112 14 46 37 3 0 39 chain 26269 chr2 243199373 + 165689959 165690259 AluYk4 311 - 13 311 98935 16 2 0 282 chain 5677 chr2 243199373 + 165699227 165699318 MADE1 96 - 1 96 188326 36 13 0 12 0 17 30 chain 69734 chr2 243199373 + 165722586 165723436 HERVL-int 5654 + 4767 5654 48504 422 12 40 156 0 2 157 0 1 85 0 6 18 chain 30822 chr2 243199373 + 165723436 165723821 MLT2A1 477 + 0 383 82831 168 5 2 9 0 1 203 chain 34505 chr2 243199373 + 165780345 165780859 L1PA16 3655 + 3112 3592 76895 75 15 14 90 2 0 164 1 0 123 15 0 7 15 0 7 chain 43920 chr2 243199373 + 165783029 165783539 L1PA5 6144 + 5640 6142 64308 495 8 0 7 chain 12600 chr2 243199373 + 165783539 165783861 MLT1A1 405 + 73 386 149836 28 27 27 29 84 81 22 2 0 21 7 6 94 3 0 5 chain 121229 chr2 243199373 + 165786310 165788062 L1PA13 3608 + 1751 3488 30627 81 0 4 42 4 10 9 0 1 31 4 5 18 0 1 13 0 4 42 16 17 6 1 0 273 0 1 105 6 2 574 3 6 114 0 1 18 4 7 4 1 0 19 1 0 43 27 7 31 4 1 33 2 0 60 1 0 57 8 5 48 2 0 4 2 0 18 1 0 22 chain 8886 chr2 243199373 + 165812843 165812980 MER2 342 - 106 251 166205 77 6 7 29 1 8 24 chain 43869 chr2 243199373 + 165820337 165820880 MER41A 554 + 0 554 64368 365 0 2 41 0 4 15 0 1 85 0 4 37 chain 19151 chr2 243199373 + 165825895 165826199 THE1D 372 - 40 354 129679 93 13 29 16 10 12 85 6 7 38 9 0 34 chain 45534 chr2 243199373 + 165838907 165839849 PABL_B 668 - 28 668 62474 86 0 1 79 2 0 28 320 9 128 1 10 9 1 2 10 6 5 136 1 2 135 chain 118572 chr2 243199373 + 165850448 165851831 LTR12C 1709 - 0 1709 31595 129 2 1 38 0 102 149 0 69 103 3 1 5 1 0 158 0 161 571 2 0 222 chain 23443 chr2 243199373 + 165870275 165870568 L1PA7 6471 - 4 293 113411 120 3 0 25 0 7 7 8 0 130 chain 24017 chr2 243199373 + 165886977 165887361 THE1D 372 + 0 372 110233 165 30 24 13 32 20 6 0 6 138 chain 139464 chr2 243199373 + 165894036 165896068 L1PB1 5432 - 265 3728 26227 8 2 0 3 2 0 9 6 5 8 1 0 20 20 19 289 6 12 85 0 2 80 3 0 242 1 0 75 1 2 160 26 44 5 0 1 76 0 1 35 0 1 49 41 1450 169 16 17 185 0 2 409 chain 293694 chr2 243199373 + 165896073 165899276 L1PA3long 6157 - 11 3214 13785 3203 chain 3329 chr2 243199373 + 165934962 165935131 MER74B 573 - 255 434 218432 27 91 120 9 19 0 23 chain 42917 chr2 243199373 + 165939593 165940221 MER4A 717 + 16 691 65517 27 0 1 208 9 21 97 0 40 9 19 0 37 2 3 162 1 2 11 4 15 42 chain 13117 chr2 243199373 + 165955022 165955209 MER107 203 + 12 203 147777 11 8 7 122 3 8 43 chain 38362 chr2 243199373 + 165988113 165988538 L1PA3long 6157 - 0 425 71628 425 chain 119158 chr2 243199373 + 165988545 165989853 L1PA3long 6157 + 4400 5708 31355 1308 chain 13347 chr2 243199373 + 166009283 166009436 L1PA5 6144 + 5985 6139 146899 4 0 1 149 chain 10678 chr2 243199373 + 166016754 166016948 MER1A 529 + 333 524 157493 55 2 0 3 1 0 8 1 4 40 26 22 29 0 1 29 chain 93559 chr2 243199373 + 166074376 166075568 L1PA8 5853 - 15 1209 38490 78 1 0 19 2 1 5 0 7 23 18 17 6 1 0 72 2 0 46 1 0 32 1 2 15 10 9 507 0 1 258 0 1 95 chain 3098 chr2 243199373 + 166087802 166087836 MLT2B3 573 - 4 38 222958 34 chain 5494 chr2 243199373 + 166114806 166114897 L1PREC2 3366 - 307 395 190109 11 2 0 29 1 0 48 chain 16777 chr2 243199373 + 166114958 166115268 L1PA15 4387 + 4028 4325 136177 56 21 20 27 1 0 53 2 1 22 4 0 8 1 0 44 14 11 44 3 1 10 chain 122214 chr2 243199373 + 166118753 166120715 L1PB1 5432 - 10 2019 30306 18 1 0 12 1 0 22 1 0 18 7 6 14 1 0 5 3 1 13 8 0 10 2 1 6 2 0 15 1 0 43 4 3 14 2 1 52 128 87 149 1 0 16 6 7 107 10 18 144 0 1 11 3 0 154 0 1 47 1 8 39 5 10 29 0 1 157 0 9 6 3 4 5 1 0 61 0 1 15 0 8 5 3 0 81 5 6 66 3 76 48 0 1 56 3 1 71 1 0 41 1 3 205 chain 22402 chr2 243199373 + 166120732 166121036 L1PB1 5432 + 3082 3388 118473 118 3 6 116 1 0 66 chain 4943 chr2 243199373 + 166125299 166125548 L1MA7 2200 + 1802 2025 195765 27 1 0 34 166 141 21 chain 11055 chr2 243199373 + 166133407 166133539 AluY 311 + 4 137 155986 128 0 1 4 chain 6340 chr2 243199373 + 166146700 166146887 L1MA5A 2387 - 12 170 182462 11 7 5 19 1 0 9 40 25 11 1 0 7 5 6 52 11 0 13 chain 8109 chr2 243199373 + 166148941 166149103 L1PA16 3655 - 31 168 170438 21 5 0 7 40 20 89 chain 119905 chr2 243199373 + 166176389 166177955 THE1B-int 1605 - 0 1588 31087 116 4 0 776 24 25 232 28 53 386 chain 25887 chr2 243199373 + 166197615 166197902 AluYk4 311 - 24 311 100494 287 chain 5673 chr2 243199373 + 166200904 166200966 L1PA3long 6157 + 6095 6157 188369 62 chain 80572 chr2 243199373 + 166201919 166202934 L1P2 5180 - 2720 3735 43358 44 1 0 31 1 0 66 3 1 76 0 8 25 0 2 628 1 4 118 9 0 12 chain 98922 chr2 243199373 + 166202955 166204116 L1PA7 6471 + 5299 6468 37045 264 0 11 45 1 4 838 6 0 7 chain 28010 chr2 243199373 + 166206971 166207278 AluYa5 310 - 0 310 92967 258 1 4 48 chain 56528 chr2 243199373 + 166285851 166286469 L1PA3long 6157 - 662 1280 54838 618 chain 59383 chr2 243199373 + 166286470 166287119 L1PA3long 6157 + 5507 6156 53188 649 chain 4257 chr2 243199373 + 166322667 166322729 MER5A1 166 - 40 103 203786 32 3 4 27 chain 5283 chr2 243199373 + 166341573 166341635 MLT1A0 366 - 50 113 192183 41 0 1 21 chain 559673 chr2 243199373 + 166342444 166348473 L1PA2 6032 + 3 6032 374 6029 chain 6122 chr2 243199373 + 166385682 166385759 THE1A-int 1579 + 1499 1574 184259 13 1 0 50 1 0 12 chain 11619 chr2 243199373 + 166387996 166388130 L1PA4 6152 - 230 364 153435 134 chain 115922 chr2 243199373 + 166388130 166389431 L1P1 4361 + 3043 4341 32487 1108 1 0 154 1 0 23 2 1 12 chain 40162 chr2 243199373 + 166440341 166440847 MER41C 542 - 0 524 69093 97 0 13 29 0 1 18 0 2 46 0 2 14 1 0 270 1 2 30 chain 13437 chr2 243199373 + 166441300 166441521 MER30 238 - 0 238 146551 34 8 6 79 0 20 63 22 21 15 chain 29373 chr2 243199373 + 166447026 166447399 THE1C 375 + 0 375 87194 176 0 1 9 5 6 183 chain 9102 chr2 243199373 + 166449004 166449148 THE1C 375 + 4 151 165063 75 11 10 41 5 9 12 chain 8447 chr2 243199373 + 166449208 166449306 THE1C 375 + 213 311 168582 98 chain 28571 chr2 243199373 + 166449312 166449610 AluYa5 310 - 12 310 90863 298 chain 74882 chr2 243199373 + 166456453 166457270 L1PA3long 6157 - 8 825 46072 817 chain 24596 chr2 243199373 + 166465329 166465630 AluY 311 + 11 296 107014 115 16 0 170 chain 8030 chr2 243199373 + 166480043 166480159 MER2 342 + 219 336 170865 73 5 6 38 chain 3002 chr2 243199373 + 166501874 166502015 MLT1A0 366 - 225 366 225008 23 58 86 7 28 0 25 chain 41125 chr2 243199373 + 166564061 166564542 LTR7 482 - 0 482 67745 49 12 14 81 2 1 337 chain 302888 chr2 243199373 + 166568324 166572225 HERVH-int 3825 - 0 3825 13287 809 1 0 43 165 0 948 0 10 299 8 35 452 15 0 102 56 57 289 0 3 9 0 2 11 0 1 56 2 1 22 9 47 11 1 0 14 29 0 24 1 0 10 1 0 25 0 56 489 chain 39909 chr2 243199373 + 166572227 166572708 LTR7 482 - 0 482 69443 49 12 14 81 2 1 337 chain 559196 chr2 243199373 + 166588173 166594204 L1PA2 6032 - 0 6032 406 852 0 1 5179 chain 3715 chr2 243199373 + 166633377 166633423 MER5A1 166 - 4 50 211718 46 chain 12618 chr2 243199373 + 166638783 166638970 MER30 238 - 0 192 149782 47 3 0 32 0 4 17 5 0 8 7 16 68 chain 29977 chr2 243199373 + 166664750 166665068 AluYb8 318 - 0 318 84885 318 chain 7260 chr2 243199373 + 166670724 166670847 MER53 195 + 38 160 175706 30 4 5 18 4 0 15 2 4 50 chain 9412 chr2 243199373 + 166682130 166682259 MER85 139 + 0 139 163498 96 4 14 29 chain 3452 chr2 243199373 + 166691826 166691868 MLT1J 494 + 5 47 216173 42 chain 121147 chr2 243199373 + 166716625 166718204 THE1B-int 1605 - 5 1605 30653 97 4 0 541 15 16 355 3 0 108 0 1 18 7 32 124 1 2 306 chain 15318 chr2 243199373 + 166823584 166823771 THE1A 353 + 167 353 140431 35 1 0 151 chain 126234 chr2 243199373 + 166823771 166825335 THE1A-int 1579 + 0 1579 29024 208 0 4 242 0 10 10 1 0 212 3 4 871 0 1 17 chain 443108 chr2 243199373 + 166828596 166834440 L1PA8 5853 + 51 5795 8949 21 2 0 10 1 0 6 79 24 193 0 4 345 14 25 5 0 2 33 2 3 297 0 2 25 0 3 500 0 4 338 14 16 9 14 0 7 9 12 82 3 1 73 0 4 304 0 3 49 0 1 16 0 1 185 0 2 61 72 11 159 2 0 17 5 4 21 5 9 209 8 4 63 15 0 154 0 2 36 1 2 252 0 4 53 8 6 106 0 1 228 1 0 138 12 11 45 0 1 230 2 1 46 0 3 397 0 4 75 0 2 74 1 7 423 1 0 49 1 0 44 2 0 39 10 9 26 1 0 5 2 1 52 2 1 19 1 0 35 chain 7781 chr2 243199373 + 166836562 166836678 MLT1A0-int 1658 + 14 125 172414 7 1 0 58 4 1 36 1 0 9 chain 14017 chr2 243199373 + 166838560 166838758 MER107 203 - 0 203 144521 11 12 16 35 0 1 140 chain 7773 chr2 243199373 + 166894165 166894250 L1PA2 6032 - 4 89 172462 85 chain 4047 chr2 243199373 + 166945441 166945493 MER53 195 - 1 53 206675 52 chain 16627 chr2 243199373 + 166945538 166945739 L1PA7 6471 - 9 216 136593 123 0 6 78 chain 220267 chr2 243199373 + 166955650 166958032 L1PA2 6032 + 3644 6032 17865 5 0 2 4 1 0 1403 0 1 123 0 4 846 chain 16411 chr2 243199373 + 166959079 166959419 L1PA15 4387 + 4035 4356 137181 68 2 1 9 9 8 9 1 0 55 1 0 19 4 0 13 1 0 39 16 13 30 16 14 11 12 7 25 chain 8079 chr2 243199373 + 166980005 166980101 HY1 111 - 5 101 170592 96 chain 11736 chr2 243199373 + 167045482 167045619 L1PA4 6152 - 15 159 153318 100 0 7 37 chain 18377 chr2 243199373 + 167045619 167045825 L1PA4 6152 + 5756 5963 131857 53 0 1 153 chain 149876 chr2 243199373 + 167061388 167063180 L1PA6 6164 + 4371 6162 24626 272 1 0 617 1 0 733 1 0 5 21 22 9 3 4 129 chain 72519 chr2 243199373 + 167066124 167066972 L1PA4 6152 + 5297 6143 47258 4 0 1 595 0 1 107 1 0 4 11 8 126 chain 4704 chr2 243199373 + 167076848 167077156 MSTD 398 + 69 390 198471 22 232 244 50 0 1 4 chain 28457 chr2 243199373 + 167079160 167079470 AluYg6 310 + 0 306 91348 291 4 0 15 chain 2452 chr2 243199373 + 167079905 167079941 L1MB1 2102 + 1905 1942 233676 12 1 2 23 chain 55116 chr2 243199373 + 167145737 167146428 L1PA7 6471 - 40 774 55485 119 1 2 23 13 15 336 0 40 199 chain 58973 chr2 243199373 + 167146428 167147264 L1PA8 5853 - 6 838 53208 87 1 0 19 2 1 52 2 1 5 1 0 74 2 0 44 1 0 49 1 0 243 6 7 143 16 17 21 5 7 62 chain 118289 chr2 243199373 + 167147264 167148714 L1PA8 5853 + 3517 4978 31694 200 0 1 4 1 0 188 0 4 243 0 3 157 1 2 15 0 2 379 0 1 262 chain 14127 chr2 243199373 + 167157428 167157612 AluSp 311 - 24 208 144117 10 0 2 121 2 5 7 3 0 10 2 0 29 chain 161884 chr2 243199373 + 167166003 167167769 L1PA2 6032 + 4260 6031 23081 1161 0 5 605 chain 22213 chr2 243199373 + 167254692 167254935 L1PA3long 6157 + 5913 6156 119289 243 chain 20394 chr2 243199373 + 167264283 167264524 L1PA8A 6298 - 8 249 125912 241 chain 33527 chr2 243199373 + 167270085 167271605 MLT2A1 477 + 5 477 78354 137 8 9 18 1 5 150 1 0 31 7 0 30 4 0 10 10 0 20 1043 12 50 chain 76269 chr2 243199373 + 167272060 167273072 MER11A 1151 + 0 1151 45328 55 0 99 22 8 0 24 1 0 94 4 0 85 4 5 59 0 1 85 6 0 11 0 7 135 6 9 54 0 4 70 6 40 49 0 9 234 chain 9737 chr2 243199373 + 167289576 167289701 MER85 139 + 0 139 161902 85 0 1 12 0 13 28 chain 4207 chr2 243199373 + 167302199 167302266 L1P3 4156 - 19 83 203621 22 2 1 7 2 0 34 chain 100329 chr2 243199373 + 167302266 167303545 L1PA8 5853 + 4573 5849 36685 168 0 1 259 0 6 557 1 0 32 1 2 11 2 0 14 11 7 46 7 6 8 1 0 53 1 0 17 1 0 89 chain 21229 chr2 243199373 + 167307039 167307308 AluSc 308 + 10 285 123109 67 0 6 56 9 7 5 0 2 132 chain 28052 chr2 243199373 + 167312465 167312834 L1PA7 6471 + 6076 6429 92815 38 19 1 198 0 1 6 0 1 108 chain 34249 chr2 243199373 + 167316202 167316636 L1PA7 6471 + 6025 6458 77283 35 0 1 232 7 5 20 4 5 50 1 0 85 chain 8870 chr2 243199373 + 167329258 167329373 L1PREC2 3366 - 529 641 166285 31 1 0 54 2 0 27 chain 150571 chr2 243199373 + 167359011 167360644 L1PA2 6032 - 918 2551 24531 1633 chain 84684 chr2 243199373 + 167360644 167361567 L1PA2 6032 + 5110 6032 41604 902 1 0 20 chain 441986 chr2 243199373 + 167362104 167367923 L1PA8 5853 - 0 5803 8996 6 2 0 86 5 4 16 2 1 52 1 0 76 13 11 37 1 0 133 0 1 178 5 6 36 6 6 114 0 4 75 0 2 341 1 0 334 2 0 124 2 1 65 15 7 210 0 1 78 5 1 183 1 3 266 0 3 70 0 4 156 0 5 219 0 4 51 12 14 81 0 1 75 0 4 164 0 4 55 13 17 54 1 0 396 0 6 28 0 1 4 0 1 109 0 1 111 6 0 429 7 6 159 0 1 23 2 0 78 7 13 262 0 3 155 3 7 75 5 7 84 11 12 51 0 1 38 1 0 51 12 0 188 55 19 11 4 3 9 1 0 22 chain 61922 chr2 243199373 + 167394747 167395561 L1PB1 5432 - 334 1162 51934 47 1 2 62 1 4 357 4 0 19 0 6 264 0 8 59 chain 514619 chr2 243199373 + 167437734 167443882 L1PA6 6164 + 0 6162 5714 250 2 1 13 2 0 738 2 0 215 1 0 120 0 1 626 0 1 231 16 0 137 0 1 245 0 4 398 0 16 188 1 0 4 0 1 91 0 1 893 0 4 183 0 4 52 0 1 63 5 4 1345 2 3 154 0 4 82 1 2 77 2 0 9 chain 44138 chr2 243199373 + 167465626 167466193 LTR22 571 + 0 571 64031 82 1 0 70 0 1 45 0 4 50 6 0 112 0 1 19 0 3 77 4 0 8 0 4 31 0 2 62 chain 14788 chr2 243199373 + 167467720 167468337 LTR12C 1709 - 175 1055 141973 40 7 6 12 1 0 4 317 257 96 45 51 50 6 325 39 chain 45402 chr2 243199373 + 167470966 167471547 LTR22 571 + 0 571 62592 59 7 0 23 1 0 169 10 3 78 0 3 185 0 2 49 chain 5453 chr2 243199373 + 167524188 167524287 L1PB3 3668 + 3503 3595 190492 25 3 1 33 11 7 13 1 0 13 chain 19244 chr2 243199373 + 167540523 167540764 Tigger3c 601 + 306 546 129400 79 1 0 161 chain 514300 chr2 243199373 + 167542345 167548447 L1PA5 6144 + 0 6144 5747 13 5 18 63 2 0 35 1 15 315 1 0 352 0 17 8 9 0 202 0 1 6 0 1 125 14 5 527 0 1 313 2 1 461 0 4 8 0 1 1185 11 8 455 5 9 807 0 7 1053 3 6 44 0 3 68 2 0 7 chain 540202 chr2 243199373 + 167559238 167565255 L1PA3long 6157 - 0 6147 2789 5253 0 128 201 0 1 421 0 1 142 chain 95524 chr2 243199373 + 167570776 167571848 L1PA5 6144 - 3 1082 37951 842 0 7 230 chain 35050 chr2 243199373 + 167571848 167572243 L1PA5 6144 + 4194 4589 76116 395 chain 36480 chr2 243199373 + 167572243 167572655 L1PA5 6144 + 4653 5065 74264 412 chain 26137 chr2 243199373 + 167578317 167578673 THE1A 353 - 0 353 99455 127 3 0 28 1 0 88 1 0 72 1 3 35 chain 126867 chr2 243199373 + 167578673 167580235 THE1A-int 1579 - 0 1579 28844 9 0 1 682 6 9 430 0 10 328 0 3 107 chain 14821 chr2 243199373 + 167593439 167593709 L1PA11 4918 - 351 608 141882 13 1 0 14 14 10 10 8 3 9 4 0 19 1 0 15 2 0 64 9 7 9 2 1 56 0 7 20 chain 63576 chr2 243199373 + 167594686 167595548 LTR12 884 - 15 884 51203 45 13 14 243 20 4 163 0 22 16 0 25 259 26 1 77 chain 239489 chr2 243199373 + 167597092 167600110 HERV9-int 5642 - 818 5637 16797 188 0 1795 299 2 0 5 0 2 876 2 0 414 9 10 128 3 0 61 80 0 57 0 85 113 1 0 75 0 4 92 25 24 302 0 3 286 chain 57601 chr2 243199373 + 167600175 167601037 LTR12 884 - 15 884 54186 218 6 7 28 8 0 18 0 1 33 0 1 98 10 14 74 35 16 118 0 1 19 41 1 65 2 27 35 0 41 54 chain 2563 chr2 243199373 + 167600673 167600703 LTR12 884 - 625 655 134895 30 chain 2991 chr2 243199373 + 167600840 167600875 LTR12 884 - 793 829 134895 9 0 1 26 chain 38083 chr2 243199373 + 167623287 167623742 LTR2 463 + 0 463 72011 60 0 4 63 0 3 24 0 1 308 chain 35566 chr2 243199373 + 167628378 167628839 MER4A1 472 + 5 472 75457 268 5 6 156 0 1 4 6 10 22 chain 44404 chr2 243199373 + 167640833 167641434 LTR22 571 - 0 571 63686 90 0 2 6 12 13 204 30 0 56 3 0 200 chain 6874 chr2 243199373 + 167673596 167673724 MER47A 366 - 186 311 178406 38 0 1 43 30 26 17 chain 14573 chr2 243199373 + 167703969 167704149 L1P3 4156 - 117 302 142671 94 0 4 61 0 1 25 chain 25600 chr2 243199373 + 167707956 167708324 THE1B 368 - 0 368 101729 49 0 8 138 2 1 62 14 6 21 14 15 68 chain 551560 chr2 243199373 + 167710232 167716358 L1PA3long 6157 + 19 6157 1247 1661 0 6 1828 1 2 918 0 1 875 0 4 843 chain 4722 chr2 243199373 + 167728162 167728216 MLT1E 632 + 549 603 198262 54 chain 513643 chr2 243199373 + 167764127 167770041 L1PA5 6144 - 0 6144 5817 11 1 3 128 1 0 1031 2 1 423 1 2 595 0 5 1562 0 4 556 1 3 784 0 2 166 0 2 309 5 4 121 3 1 123 0 217 91 chain 493846 chr2 243199373 + 167791926 167798096 L1PA5 6144 - 1 6144 7183 133 9 8 11 10 12 419 0 1 124 2 1 15 0 1 939 0 321 45 0 2 47 0 1 92 0 1 22 0 1 128 7 0 581 0 1 817 0 3 162 0 1 416 355 0 350 18 19 889 0 1 579 chain 4320 chr2 243199373 + 167838223 167838335 MLT1C 463 - 298 404 202972 31 47 41 34 chain 566632 chr2 243199373 + 167844964 167851000 L1HS 6032 + 3 6032 111 708 7 0 5321 chain 293185 chr2 243199373 + 167865575 167868831 L1PA3long 6157 - 0 3262 13809 266 1 0 831 4 0 753 1 0 1136 0 12 264 chain 469125 chr2 243199373 + 167878961 167884293 L1PA3long 6157 - 0 5280 8067 355 5 0 1308 0 3 2378 0 1 300 52 0 21 0 2 46 0 1 504 2 0 361 chain 187490 chr2 243199373 + 167885668 167888024 L1PA7 6471 - 1951 4324 20292 144 0 3 158 1 0 322 0 1 141 7 0 49 1 0 167 0 1 37 1 0 399 0 4 175 3 23 264 4 1 109 0 2 183 5 4 186 chain 152559 chr2 243199373 + 167888024 167889950 L1PA7 6471 + 4516 6461 24279 22 0 2 134 0 2 259 0 1 4 11 10 357 0 5 309 0 3 69 0 1 32 0 1 396 3 6 20 4 5 143 1 2 29 1 0 4 0 1 128 chain 121693 chr2 243199373 + 167891682 167893239 THE1A-int 1579 + 0 1579 30483 15 0 2 8 19 20 754 0 1 427 0 19 73 2 0 90 0 1 169 chain 26384 chr2 243199373 + 167893239 167893595 THE1A 353 + 0 353 98473 109 2 1 123 3 2 5 0 1 60 2 0 52 chain 6429 chr2 243199373 + 167902994 167903109 L1PA15 4387 + 4217 4327 181785 39 17 14 43 4 2 12 chain 15001 chr2 243199373 + 167925242 167925462 MER30 238 + 0 238 141318 72 0 1 13 26 43 109 chain 11695 chr2 243199373 + 167935405 167935595 L1P4 1494 - 1231 1414 153493 118 1 0 13 9 8 33 3 0 3 2 0 8 chain 547065 chr2 243199373 + 167938456 167944477 L1PA2 6032 - 1 6031 1821 154 4 5 591 1 4 370 1 0 50 0 1 626 0 4 1183 1 0 851 0 1 1637 0 1 552 chain 514737 chr2 243199373 + 167949829 167956473 L1PA7 6471 - 1 6468 5697 145 4 5 6 1 0 164 0 1 528 1 0 108 0 2 291 1 0 478 0 1 63 1 3 96 0 1 544 5 6 19 0 1 56 245 11 10 4 0 5 2 1 5 0 3 585 0 4 506 0 1 188 16 7 32 0 1 234 0 1 74 0 4 9 1 2 404 0 1 46 4 5 263 2 3 38 0 5 129 0 1 87 1 0 6 0 1 281 5 45 382 5 1 167 3 7 394 chain 11786 chr2 243199373 + 167957845 167958179 L1PB1 5432 - 5 306 153107 4 1 0 9 1 0 10 1 0 13 7 6 15 1 0 24 77 60 5 1 0 43 2 1 16 2 1 52 2 0 9 18 13 5 1 0 15 chain 65185 chr2 243199373 + 167970957 167971682 L1PA3long 6157 - 0 726 50483 386 0 1 339 chain 111953 chr2 243199373 + 168009920 168011163 L1PA3long 6157 - 0 1244 33653 826 0 1 333 0 1 79 1 0 4 chain 114727 chr2 243199373 + 168011163 168012468 L1P1 4361 + 3039 4341 32871 1112 1 0 160 1 0 17 2 1 12 chain 18063 chr2 243199373 + 168016905 168017247 THE1B 368 - 2 368 132689 63 29 32 22 41 51 26 4 0 111 11 26 35 chain 22698 chr2 243199373 + 168018817 168019161 THE1B 368 - 0 368 117085 125 35 45 30 2 1 102 11 26 39 chain 26790 chr2 243199373 + 168020668 168020983 AluYk4 311 + 0 309 97014 126 6 0 183 chain 85404 chr2 243199373 + 168028546 168029591 MER11B 1079 - 5 1072 41380 24 9 8 120 1 0 4 1 2 143 1 3 319 0 4 113 1 18 309 chain 199177 chr2 243199373 + 168030450 168032969 L1P3 4156 - 18 4155 19271 23 2 1 7 2 0 412 0 5 7 8 3 185 0 1 131 0 30 325 0 3 170 10 24 98 0 1438 319 1 0 253 5 26 258 1 0 14 1 0 60 7 119 26 2 3 37 0 3 112 0 1 43 chain 125034 chr2 243199373 + 168072450 168073805 L1PA2 6032 + 4676 6031 29381 1355 chain 23002 chr2 243199373 + 168123876 168124232 THE1B 368 + 1 368 115612 12 2 0 24 0 5 130 1 0 26 10 11 11 21 29 119 chain 121836 chr2 243199373 + 168124232 168125842 THE1B-int 1605 + 0 1593 30432 274 8 0 59 2 1 96 38 21 168 1 2 12 1 0 4 0 1 311 6 0 8 0 6 445 1 0 142 0 9 34 chain 7241 chr2 243199373 + 168134540 168134709 MLT1D 503 - 10 198 175824 75 71 90 23 chain 5067 chr2 243199373 + 168173306 168173369 LTR16C 481 + 392 455 194459 63 chain 5371 chr2 243199373 + 168182146 168182212 L1MA4A 3247 - 171 237 191301 66 chain 6884 chr2 243199373 + 168191823 168191900 MER57A1 433 - 355 432 178325 77 chain 32625 chr2 243199373 + 168220861 168221234 L1PA5 6144 - 4 384 79807 105 0 7 268 chain 36949 chr2 243199373 + 168259544 168259997 L1PA5 6144 - 6 463 73585 49 10 14 394 chain 57757 chr2 243199373 + 168266233 168267258 L1PA8 5853 + 5139 5853 54106 42 0 1 312 0 1 67 1 0 47 5 3 23 302 0 19 5 0 24 2 1 9 1 0 72 1 0 93 chain 4016 chr2 243199373 + 168267686 168267731 L1MA4 2864 + 1834 1879 207131 45 chain 8660 chr2 243199373 + 168296066 168296158 L1PA3long 6157 - 0 92 167430 92 chain 484509 chr2 243199373 + 168298389 168304496 L1PA2 6032 - 1 6022 7573 346 0 1 504 0 4 285 0 1 515 1 5 140 12 16 454 0 1 446 1 2 205 0 1 133 0 1 705 14 17 50 2 1 948 0 2 470 135 7 52 5 12 115 13 14 322 25 24 65 18 31 126 chain 24425 chr2 243199373 + 168335090 168335370 L1PA5 6144 - 12 291 107937 199 1 0 80 chain 9295 chr2 243199373 + 168353460 168353569 L1PA4 6152 + 6037 6152 164081 99 0 6 10 chain 4395 chr2 243199373 + 168366948 168367134 LTR80B 572 - 365 561 202005 9 1 0 4 1 0 39 110 122 22 chain 18427 chr2 243199373 + 168367725 168368097 THE1C 375 + 0 375 131701 60 0 7 16 63 61 35 40 39 84 4 0 38 0 3 32 chain 11976 chr2 243199373 + 168393538 168393888 THE1B 368 - 0 368 152303 14 38 47 63 42 47 28 1 0 31 87 92 46 chain 545506 chr2 243199373 + 168414830 168423019 L1PA3long 6157 + 2 6155 2011 959 0 4 256 0 1 1568 0 2 144 4 3 1383 2053 0 38 0 4 946 0 4 18 0 1 10 0 2 810 chain 140994 chr2 243199373 + 168419159 168421197 SVA_D 2077 - 0 1850 25987 74 1 0 548 1 0 8 44 16 30 8 0 9 0 4 63 1 0 90 0 2 13 1 0 27 1 0 53 0 2 8 291 0 27 0 2 16 0 51 45 0 83 145 3 0 33 0 3 498 chain 2931 chr2 243199373 + 168419791 168419833 SVA_D 2077 - 778 820 99313 42 chain 3644 chr2 243199373 + 168420318 168420414 SVA_D 2077 - 755 851 108475 96 chain 8608 chr2 243199373 + 168477054 168477275 MER82 654 - 27 254 167681 50 31 40 26 57 53 23 0 1 34 chain 26293 chr2 243199373 + 168478099 168478524 THE1C 375 + 0 375 98853 68 1 0 57 3 0 53 5 6 46 37 1 16 8 2 43 4 0 57 1 0 26 chain 56174 chr2 243199373 + 168479562 168480274 L1PA7 6471 + 5743 6467 55026 123 1 0 26 0 2 127 4 18 103 0 2 164 7 0 6 6 13 134 5 0 6 chain 3171 chr2 243199373 + 168488005 168488040 U7 62 - 16 51 221531 35 chain 106825 chr2 243199373 + 168488308 168489582 L1PA7 6471 - 5 1275 35031 10 6 0 89 0 3 48 0 1 597 9 8 89 1 0 425 chain 292816 chr2 243199373 + 168489593 168493510 L1PA7 6471 + 1851 6468 13832 230 2 0 12 0 375 163 19 0 84 1 0 129 9 0 367 5 1 624 3 1 133 0 3 288 1 0 52 0 1 293 0 2 59 0 4 76 2 1 81 0 1 152 7 9 119 1 3 83 295 651 569 10 7 37 4 0 7 chain 534983 chr2 243199373 + 168519486 168525471 L1PA3long 6157 - 15 6145 3594 324 1 0 2525 0 1 231 0 13 1690 0 3 424 3 0 25 12 140 187 0 1 284 7 9 131 0 1 141 chain 7934 chr2 243199373 + 168545721 168546028 L1MDa 1598 + 1049 1366 171420 41 10 21 14 19 16 62 144 146 17 chain 7927 chr2 243199373 + 168562301 168562432 MER3 215 - 10 167 171461 35 23 49 73 chain 12194 chr2 243199373 + 168573812 168573949 L1PA4 6152 - 12 148 151444 6 1 0 130 chain 13855 chr2 243199373 + 168589819 168590038 MER30 238 + 0 238 145051 99 0 1 4 7 22 24 4 10 39 7 4 35 chain 60802 chr2 243199373 + 168654514 168655289 L1PA11 4918 - 455 1232 52426 56 2 0 12 3 2 143 0 3 363 0 1 17 0 1 179 chain 539434 chr2 243199373 + 168660840 168666936 L1PA4 6152 - 0 6150 2909 6 0 2 331 0 1 1789 0 11 119 0 2 137 0 1 275 0 1 898 0 13 555 0 19 1745 1 5 240 chain 555348 chr2 243199373 + 168691553 168697695 L1PA3long 6157 + 0 6156 786 710 0 7 220 4 0 131 0 2 120 1 4 534 0 1 26 1 0 587 0 1 563 0 1 2403 0 4 577 0 1 260 1 0 4 chain 392634 chr2 243199373 + 168701837 168707432 L1PB1 5432 + 34 5390 10373 138 9 5 75 0 1 150 24 5 80 3 15 48 17 18 22 53 55 55 0 2 205 0 1 37 0 2 13 0 1 267 3 1 23 0 3 147 2 0 5 13 10 178 0 6 138 0 1 219 13 32 361 2 0 141 6 0 52 0 4 292 2 0 172 1 0 84 1 0 530 1 14 67 0 1 19 1 3 253 0 1 6 1 0 337 314 0 36 0 1 255 3 0 16 0 1 350 0 3 110 2 67 50 10 9 10 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 20 chain 371918 chr2 243199373 + 168741669 168747393 L1PB1 5432 - 26 5395 11026 5 0 1 9 1 0 21 3 2 22 2 0 15 1 0 4 2 0 19 16 6 6 3 0 15 12 11 21 5 0 12 1 0 16 2 1 51 2 0 10 5 1 12 1 0 12 1 0 8 687 35 8 0 1 332 1 0 45 0 2 82 3 0 75 2 1 101 6 8 96 0 5 365 10 8 223 59 7 314 0 373 299 9 10 75 2 1 167 3 0 136 1 2 107 1 2 182 4 5 57 0 3 6 7 4 171 6 8 201 0 2 41 3 4 14 0 4 14 1 7 127 15 0 41 0 4 402 0 1 101 0 3 108 0 1 29 6 4 157 0 1 507 chain 23719 chr2 243199373 + 168742035 168742415 L1PB 1623 + 173 543 111941 15 19 16 35 2 1 29 4 3 47 0 1 78 2 1 72 4 0 14 1 0 29 0 1 4 2 1 23 chain 3362 chr2 243199373 + 168758614 168758651 MADE1 96 - 59 96 217827 37 chain 81213 chr2 243199373 + 168774804 168775955 HSMAR2 1300 + 44 1201 43080 12 0 1 6 1 0 231 8 4 17 4 9 13 0 5 5 5 0 153 0 2 147 1 2 99 8 9 287 6 5 27 1 0 5 3 5 31 11 12 70 chain 25692 chr2 243199373 + 168778846 168779150 AluY 311 + 0 311 101319 64 0 8 51 1 0 188 chain 11200 chr2 243199373 + 168783803 168783956 MSTC 436 - 255 431 155421 18 1 25 52 1 0 81 chain 30993 chr2 243199373 + 168790345 168790739 LTR57 402 + 0 395 82532 364 3 4 27 chain 24920 chr2 243199373 + 168797542 168797879 THE1A 353 - 0 346 105222 105 7 18 50 0 1 6 1 0 65 2 0 101 chain 31093 chr2 243199373 + 168799540 168799964 MLT2A1 477 - 0 477 82356 20 1 0 21 1 0 8 0 49 16 2 0 5 0 2 182 1 5 18 7 9 142 chain 4669 chr2 243199373 + 168817362 168817417 MER5A 189 - 0 55 198879 55 chain 32654 chr2 243199373 + 168827122 168827541 MER57A1 433 + 0 433 79758 133 3 15 132 1 2 22 0 1 128 chain 53430 chr2 243199373 + 168830956 168831717 MER57-int 2662 + 40 815 56740 31 46 28 9 1 0 79 0 2 31 0 4 89 2 0 57 0 1 130 0 28 142 22 18 113 0 3 5 0 1 4 chain 11310 chr2 243199373 + 168850989 168851260 L1MB5 1630 - 30 296 155026 36 0 102 10 106 0 60 1 0 58 chain 9960 chr2 243199373 + 168875796 168875937 MER44A 345 + 107 269 160780 124 5 26 12 chain 30045 chr2 243199373 + 168926957 168927296 L1PA5 6144 - 0 339 84659 339 chain 17603 chr2 243199373 + 168936616 168936858 THE1B-int 1605 + 249 523 133989 58 11 16 109 0 25 8 0 2 56 chain 18675 chr2 243199373 + 168949778 168950099 THE1B 368 - 29 365 131013 20 14 13 64 18 15 13 0 4 9 3 6 10 1 0 4 0 1 11 1 0 55 0 1 38 5 17 55 chain 67492 chr2 243199373 + 168957083 168957876 L1PA7 6471 + 5463 6470 49453 137 0 213 500 3 4 153 chain 4925 chr2 243199373 + 168981352 168981409 L1PA7 6471 + 6177 6234 195983 57 chain 20251 chr2 243199373 + 168981409 168981644 L1PA7 6471 + 6236 6470 126376 230 1 0 4 chain 3526 chr2 243199373 + 169006555 169006597 MER5A1 166 + 88 130 214951 42 chain 4671 chr2 243199373 + 169023174 169023308 MER3 215 - 52 195 198856 7 6 0 17 1 11 37 43 48 23 chain 3245 chr2 243199373 + 169029406 169029444 MER5B 177 + 9 47 220110 38 chain 3347 chr2 243199373 + 169043976 169044054 MIR 256 + 109 190 218091 17 27 30 34 chain 196356 chr2 243199373 + 169091967 169094170 L1PA4 6152 - 5 2217 19476 47 0 4 68 8 1 725 0 4 316 1 4 312 0 3 183 0 1 98 0 1 445 chain 29493 chr2 243199373 + 169113574 169113965 MLT2A1 477 + 0 391 86661 168 5 2 9 0 1 22 1 2 21 0 1 143 0 4 12 4 0 6 chain 31641 chr2 243199373 + 169119960 169120433 MLT2A1 477 + 0 477 81420 142 0 1 26 13 11 22 1 2 79 20 0 102 4 0 8 8 0 8 3 39 37 chain 10081 chr2 243199373 + 169126606 169126720 L1PA8A 6298 + 6177 6291 160175 114 chain 50794 chr2 243199373 + 169148442 169149048 L1PA7 6471 - 10 618 58437 423 15 17 168 chain 44097 chr2 243199373 + 169160592 169161142 MLT2A2 560 + 0 560 64093 204 0 1 128 4 5 188 0 4 20 0 4 6 chain 27014 chr2 243199373 + 169174946 169175309 MER39 703 + 333 703 96239 77 0 4 54 3 4 162 1 2 39 0 1 27 chain 4605 chr2 243199373 + 169178726 169178781 LTR48 738 + 555 610 199573 55 chain 22523 chr2 243199373 + 169188258 169188544 AluY 311 + 0 304 117920 66 3 0 57 3 0 7 0 5 105 0 19 45 chain 51337 chr2 243199373 + 169230761 169231348 L1PA6 6164 + 5562 6149 58077 587 chain 19399 chr2 243199373 + 169238291 169238618 L1MA6 2487 + 11 324 128950 24 43 29 20 2 0 4 1 0 31 0 2 49 1 2 20 3 4 49 1 0 79 chain 404606 chr2 243199373 + 169240363 169245742 L1PB1 5432 + 77 5420 9957 52 0 2 260 12 10 5 0 2 42 0 3 19 0 1 289 0 3 74 0 1 126 6 8 276 0 1 152 13 0 87 1 2 155 5 4 417 0 3 126 20 9 169 0 4 117 0 7 79 0 5 255 1 0 454 1 0 14 1 0 416 7 6 276 0 1 617 2 0 131 10 148 197 1 0 12 149 0 33 1 0 9 1 0 1 2 0 10 2 0 53 2 1 16 1 0 43 1 0 16 3 0 6 16 6 19 1 0 4 3 1 14 2 0 24 1 0 4 0 3 14 1 0 14 3 2 13 chain 5607 chr2 243199373 + 169250821 169250970 MER58A 224 - 12 178 189016 45 67 84 37 chain 3607 chr2 243199373 + 169252430 169252473 MADE1 96 + 54 96 213525 4 1 0 38 chain 504236 chr2 243199373 + 169263264 169270010 L1PA7 6471 - 6 6468 6583 411 0 1 39 1 0 205 310 0 185 0 3 15 0 4 90 2 14 117 0 1 705 0 4 146 1 3 517 0 3 64 5 16 231 3 1 301 61 329 218 1 18 229 0 1 27 1 2 60 315 10 1044 0 2 5 0 5 8 5 0 212 0 4 56 0 1 307 1 0 190 0 1 5 14 11 109 0 1 130 0 1 400 chain 4267 chr2 243199373 + 169291484 169291700 MLT1G3 592 - 78 320 203668 22 152 178 42 chain 95574 chr2 243199373 + 169348142 169349275 L1PA7 6471 - 4 1150 37938 8 4 0 92 1 10 26 1 0 32 1 4 5 0 1 587 0 2 83 0 3 293 chain 28595 chr2 243199373 + 169365041 169365379 L1PA7 6471 + 6130 6468 90757 191 0 1 7 1 0 139 chain 31921 chr2 243199373 + 169376606 169377094 L1PA17 2846 - 154 628 80980 42 2 1 17 2 0 40 2 0 11 8 5 7 0 3 33 1 0 21 17 10 217 1 0 67 chain 12788 chr2 243199373 + 169389685 169389826 L1P3 4156 - 105 246 149102 141 chain 28944 chr2 243199373 + 169395472 169395774 AluYa5 310 - 8 310 89251 302 chain 3380 chr2 243199373 + 169416935 169416972 MIRc 230 - 101 138 217465 37 chain 44714 chr2 243199373 + 169418760 169419276 LTR5A 1029 - 0 522 63367 78 0 6 438 chain 109129 chr2 243199373 + 169461420 169463190 MSTA-int 1630 + 0 1628 34409 16 0 1 19 2 1 38 7 28 11 47 0 12 0 1 174 6 8 156 5 0 175 2 13 38 1 0 44 5 10 24 1 7 52 10 11 272 0 1 44 13 14 47 1 0 19 27 23 199 134 0 51 12 13 106 chain 25686 chr2 243199373 + 169463192 169463606 MSTA 426 + 0 426 101349 56 0 1 33 3 0 9 49 57 80 2 0 64 0 5 6 8 11 104 chain 404275 chr2 243199373 + 169471441 169476903 L1PB1 5432 + 12 5404 9970 7 1 0 6 1 0 27 3 2 13 6 12 209 0 1 255 3 1 22 0 1 4 1 0 62 8 9 76 0 1 160 0 1 4 1 0 512 8 0 153 0 1 263 0 1 50 0 1 205 0 3 427 2 1 340 1 0 356 0 1 253 0 1 149 0 1 123 4 6 228 1 2 59 0 1 20 0 15 89 0 1 150 0 3 54 0 1 89 19 21 42 0 2 120 6 0 75 1 3 90 0 1 4 0 2 90 0 20 20 0 3 38 0 1 107 115 18 16 4 1 20 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 23 26 31 10 9 10 23 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 4298 chr2 243199373 + 169476465 169476516 L1PB1 5432 - 328 379 203244 51 chain 12707 chr2 243199373 + 169478673 169478851 MER30 238 - 6 199 149431 33 3 0 70 4 22 68 chain 181438 chr2 243199373 + 169503003 169505550 L1PA14 3548 - 92 2664 20852 58 1 0 6 2 1 14 4 2 31 17 12 111 1 0 8 2 0 76 0 6 17 4 0 106 19 14 41 2 0 14 3 1 147 1 5 69 0 8 21 1 0 90 0 1 32 0 4 182 0 3 151 0 1 290 1 0 14 20 19 57 0 1 45 1 0 3 5 0 86 1 2 16 10 7 81 1 0 54 17 17 29 1 0 319 0 35 265 chain 20210 chr2 243199373 + 169507953 169508314 THE1D 372 - 0 372 126503 21 1 0 100 84 95 47 1 0 4 3 5 100 chain 141972 chr2 243199373 + 169512848 169514513 LTR12C 1709 - 0 1709 25828 481 0 4 107 3 1 5 1 0 195 6 8 31 0 40 75 0 1 447 1 0 4 0 1 309 chain 45376 chr2 243199373 + 169520890 169521442 MER41A 554 - 1 554 62626 224 6 7 322 chain 40485 chr2 243199373 + 169533531 169534007 L1PA7 6471 - 1 478 68614 341 1 2 134 chain 25063 chr2 243199373 + 169534349 169534646 L1PA7 6471 + 5607 5902 104494 14 2 0 281 chain 6206 chr2 243199373 + 169535316 169535389 L1MA6 2487 + 2154 2227 183536 73 chain 11899 chr2 243199373 + 169538536 169538689 L1MA5 2750 - 192 361 152605 8 0 16 106 1 0 4 0 1 34 chain 19327 chr2 243199373 + 169554782 169555177 MSTA 426 - 27 426 129152 40 7 0 93 64 65 44 9 13 11 2 0 16 14 19 31 8 11 56 chain 125167 chr2 243199373 + 169580515 169581972 LTR12C 1709 - 0 1709 29335 269 0 1 211 0 4 99 0 129 154 6 5 10 0 119 708 chain 13808 chr2 243199373 + 169597934 169598127 MER30 238 - 0 238 145232 100 2 30 61 1 18 29 chain 30277 chr2 243199373 + 169616639 169617063 MLT2A1 477 - 0 477 84007 41 2 0 8 0 44 60 1 0 118 12 13 19 4 8 23 0 1 37 0 2 35 0 4 64 chain 16657 chr2 243199373 + 169618418 169618675 L1PA8 5853 + 5595 5847 136517 13 2 0 70 2 1 14 16 16 31 2 1 19 1 0 87 chain 100829 chr2 243199373 + 169647505 169648670 L1PA4 6152 - 1 1177 36553 38 0 1 427 6 7 279 4 9 87 1 5 323 chain 6817 chr2 243199373 + 169693551 169693646 MLT1A0 366 - 178 271 178826 14 5 3 76 chain 24159 chr2 243199373 + 169701115 169701398 AluY 311 + 17 301 109433 108 1 2 174 chain 27403 chr2 243199373 + 169721996 169722328 L1P1 4361 + 3997 4329 94957 83 6 8 63 1 0 154 1 0 24 chain 369613 chr2 243199373 + 169723778 169727875 L1PA4 6152 + 2019 6152 11109 474 0 32 658 1 0 1282 0 1 910 1 2 618 0 1 41 0 2 112 chain 6318 chr2 243199373 + 169750350 169750546 L1MB3 1562 - 10 189 182656 23 33 32 29 1 0 4 58 43 48 chain 29592 chr2 243199373 + 169788525 169788878 L1PA7 6471 - 8 359 86228 141 0 1 8 3 0 201 chain 3747 chr2 243199373 + 169806742 169806790 MLT2A1 477 + 418 464 211219 11 2 0 35 chain 33550 chr2 243199373 + 169810197 169810635 MER4A1 472 + 0 464 78314 15 1 7 8 1 0 193 11 32 209 chain 74141 chr2 243199373 + 169841327 169842443 L1PB1 5432 + 4352 5422 46437 164 0 1 90 1 34 73 1 0 128 0 1 152 1 2 4 1 0 102 1 2 10 52 2 29 1 0 12 5 1 8 2 0 50 6 5 14 1 0 45 1 0 15 28 15 11 12 9 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 43155 chr2 243199373 + 169859488 169860348 L1PB1 5432 - 10 700 65223 23 1 0 8 1 0 21 1 0 8 5 0 14 2 0 16 9 6 18 20 12 15 1 0 40 5 4 18 2 1 50 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 134 0 9 6 7 129 13 7 55 1 2 173 chain 48600 chr2 243199373 + 169865700 169866244 L1PA4 6152 + 5603 6152 60036 538 0 5 6 chain 29459 chr2 243199373 + 169886234 169886549 AluYb8 318 - 2 318 86803 32 0 1 283 chain 27077 chr2 243199373 + 169899560 169899913 THE1A 353 + 0 353 96014 74 0 1 4 1 0 31 1 0 81 1 4 7 2 0 151 chain 126488 chr2 243199373 + 169899927 169901488 THE1A-int 1579 + 16 1572 28948 209 0 3 416 13 4 453 1 2 4 1 0 305 0 1 159 chain 27569 chr2 243199373 + 169901497 169901848 THE1A 353 + 2 353 94434 108 1 0 81 6 7 155 chain 217650 chr2 243199373 + 169910743 169914034 L1PA10 4194 + 1152 4150 18025 87 12 0 126 0 1 98 0 1 17 0 1 101 7 0 10 0 2 32 24 25 217 0 3 391 0 1 213 311 7 54 56 59 12 1 2 5 2 0 11 3 0 12 10 11 19 0 4 59 0 1 240 1 9 123 0 1 5 1 0 16 3 1 9 0 4 501 0 6 52 9 8 132 1 0 33 0 4 238 3 0 34 chain 84680 chr2 243199373 + 169916663 169917597 L1PA4 6152 - 1 936 41646 112 0 1 822 chain 20542 chr2 243199373 + 169939310 169939542 L1PA4 6152 + 5910 6143 125500 190 0 1 42 chain 28882 chr2 243199373 + 169974458 169974935 MER51E 476 - 0 476 89533 51 1 29 66 64 48 11 22 9 262 chain 25393 chr2 243199373 + 169977021 169977310 AluY 311 + 13 303 102718 113 0 1 176 chain 67898 chr2 243199373 + 169990292 169991094 HERVH-int 3825 + 2813 3825 49290 307 0 210 495 chain 32133 chr2 243199373 + 169992902 169993316 LTR7 482 + 0 444 80636 101 15 14 98 0 1 11 4 3 18 1 32 166 chain 3225 chr2 243199373 + 169996661 169996729 MER5A1 166 + 0 76 220510 24 19 27 25 chain 12078 chr2 243199373 + 170018418 170018553 L1PA6 6164 - 12 147 151875 135 chain 5162 chr2 243199373 + 170025721 170025785 LTR5B 1012 + 946 1012 193426 57 0 2 7 chain 16964 chr2 243199373 + 170069145 170069426 L1PB1 5432 + 5170 5427 135688 50 3 2 15 1 0 43 1 0 16 2 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 7868 chr2 243199373 + 170076091 170076253 L1PA16 3655 + 3484 3619 171881 58 12 0 9 0 12 14 3 0 15 19 0 11 5 0 16 chain 51096 chr2 243199373 + 170090653 170091275 L1PA8 5853 - 0 638 58257 93 1 0 18 1 0 47 0 1 6 1 0 6 1 0 74 2 0 44 1 0 80 0 21 63 0 1 184 chain 17222 chr2 243199373 + 170099660 170099855 L1PA7 6471 - 13 208 134994 195 chain 565527 chr2 243199373 + 170105133 170111166 L1HS 6032 + 1 6032 182 73 0 1 601 4 0 2459 1 2 2895 chain 239278 chr2 243199373 + 170118123 170120764 L1PA3long 6157 + 3513 6156 16813 1369 0 1 1121 7 9 139 1 0 4 chain 304303 chr2 243199373 + 170123776 170127260 L1PA5 6144 + 2641 6129 13225 868 1 0 436 0 5 1080 1 0 966 0 1 132 chain 10023 chr2 243199373 + 170127904 170128019 L1PA5 6144 + 6013 6129 160469 19 0 1 96 chain 24830 chr2 243199373 + 170161256 170161560 L1PA8 5853 + 5376 5677 105724 188 1 0 44 2 0 69 chain 487918 chr2 243199373 + 170164750 170170334 L1PA5 6144 - 15 6144 7449 125 7 0 6 1 9 1526 0 1 372 0 23 817 0 1 269 0 1 675 2 0 1134 9 0 29 0 1 461 1 4 59 0 525 91 chain 78194 chr2 243199373 + 170182749 170183589 SVA_D 2077 + 58 898 44421 840 chain 16784 chr2 243199373 + 170183667 170183909 SVA_F 1814 + 855 1084 77056 25 0 1 64 34 17 32 0 3 87 chain 3062 chr2 243199373 + 170183757 170183790 SVA_F 1814 + 1105 1138 144201 33 chain 3755 chr2 243199373 + 170183909 170183961 SVA_F 1814 + 724 896 77099 12 0 119 31 1 2 8 chain 39750 chr2 243199373 + 170183961 170184953 SVA_F 1814 + 767 1327 69685 8 1 0 15 25 57 8 1 0 29 0 4 24 126 0 35 0 15 131 306 0 120 49 0 114 chain 1734 chr2 243199373 + 170183985 170184010 SVA_F 1814 + 1111 1136 77056 25 chain 6311 chr2 243199373 + 170184072 170184163 SVA_F 1814 + 1201 1291 77056 73 1 0 17 chain 2528 chr2 243199373 + 170184163 170184198 SVA_F 1814 + 1116 1152 77099 21 1 2 13 chain 2934 chr2 243199373 + 170184386 170184446 SVA_F 1814 + 1114 1174 141287 60 chain 1564 chr2 243199373 + 170184455 170184497 SVA_F 1814 + 845 886 154558 10 1 0 31 chain 3060 chr2 243199373 + 170184507 170184542 SVA_F 1814 + 1105 1138 185735 23 2 0 10 chain 3113 chr2 243199373 + 170184542 170184660 SVA_F 1814 + 769 843 122046 6 1 0 13 82 39 16 chain 3374 chr2 243199373 + 170184575 170184644 SVA_F 1814 + 1174 1243 141287 69 chain 1293 chr2 243199373 + 170184790 170184839 SVA_F 1814 + 988 1037 122046 49 chain 23328 chr2 243199373 + 170200629 170200906 L1PA7 6471 - 3 276 114043 7 4 0 266 chain 29465 chr2 243199373 + 170209145 170209548 L1PA8 5853 + 5478 5853 86778 86 1 0 45 2 0 52 21 0 21 1 0 6 1 0 56 1 0 16 2 1 92 chain 3403 chr2 243199373 + 170212300 170212340 MADE2 80 + 0 40 217016 40 chain 243994 chr2 243199373 + 170223805 170226529 L1PA5 6144 + 3409 6132 16562 273 2 0 396 5 6 2048 chain 21268 chr2 243199373 + 170250419 170250661 L1PA5 6144 - 2 244 122963 242 chain 537513 chr2 243199373 + 170255732 170261808 L1PA4 6152 + 42 6152 3232 1194 0 1 471 0 1 139 0 1 1653 0 1 333 0 30 2286 chain 25027 chr2 243199373 + 170265865 170266153 AluSp 311 + 10 296 104650 122 2 0 164 chain 34961 chr2 243199373 + 170286190 170286600 L1PA7 6471 - 2244 2654 76121 410 chain 186588 chr2 243199373 + 170286600 170288814 L1PA7 6471 + 4247 6470 20370 165 0 2 67 1 0 38 0 2 428 1 0 672 1 0 77 0 2 608 8 7 24 17 26 100 2 0 5 chain 213705 chr2 243199373 + 170290767 170294137 L1MA2 4263 + 681 4114 18244 369 0 2 16 0 3 274 10 9 5 0 1 87 5 2 9 0 4 14 296 0 8 5 6 36 0 1 357 11 9 71 1 0 39 13 121 120 1 0 167 21 25 22 0 7 76 1 0 53 0 1 49 3 0 60 0 3 68 2 0 128 2 0 139 4 254 28 8 10 19 5 6 45 1 0 151 0 4 15 16 11 5 1 0 72 1 0 146 24 22 126 2 1 9 1 3 58 0 6 6 40 27 38 1 0 10 chain 3617 chr2 243199373 + 170303308 170303351 MER21C 908 + 117 160 213397 43 chain 545943 chr2 243199373 + 170309291 170315438 L1PA4 6152 + 0 6151 1949 708 1 2 265 0 1 1013 0 1 498 0 3 1796 0 2 1005 1 0 393 4 0 183 2 0 266 0 3 12 chain 20745 chr2 243199373 + 170326316 170327549 L1MA10 1535 + 738 1498 124806 110 1 0 36 0 1 99 886 428 36 38 23 27 chain 118562 chr2 243199373 + 170361513 170362978 SVA_D 2077 + 84 1729 31600 30 1 0 558 1 38 177 68 211 158 48 0 96 0 49 328 chain 3165 chr2 243199373 + 170362506 170362554 SVA_D 2077 + 1080 1129 85199 11 1 2 36 chain 4406 chr2 243199373 + 170391268 170391321 MLT1A1 405 + 336 389 201876 53 chain 24089 chr2 243199373 + 170410145 170410439 AluY 311 + 0 290 109803 123 8 4 163 chain 21589 chr2 243199373 + 170415486 170415774 AluSp 311 - 14 303 121810 143 23 24 122 chain 8145 chr2 243199373 + 170422505 170422675 L1MA1 4479 - 289 443 170257 18 7 0 13 8 4 4 1 0 9 1 0 35 2 0 21 19 18 32 chain 142742 chr2 243199373 + 170431041 170432685 SVA_D 2077 - 10 2077 25694 328 0 10 328 8 0 5 0 8 43 1 0 19 0 78 30 1 0 6 0 178 80 1 38 306 0 116 312 0 12 133 1 0 18 5 0 19 chain 308647 chr2 243199373 + 170472368 170476158 L1PA7 6471 - 10 3783 13060 140 0 6 6 18 11 258 0 1 249 0 3 83 6 4 79 1 0 310 14 0 70 0 1 21 0 1 269 1 0 132 0 4 144 0 4 315 0 1 779 0 4 11 15 5 53 8 1 10 13 12 52 11 0 182 3 13 124 4 3 323 0 1 67 0 1 4 3 4 12 chain 7925 chr2 243199373 + 170479841 170479954 MER85 139 - 0 124 171480 23 1 0 7 1 13 81 chain 22100 chr2 243199373 + 170506165 170506445 AluSp 311 + 10 295 119781 9 1 0 47 3 0 196 0 9 24 chain 7529 chr2 243199373 + 170516198 170516296 MSTA-int 1630 - 12 112 173983 37 1 2 25 0 1 35 chain 39196 chr2 243199373 + 170522880 170523640 Tigger1 2417 - 0 834 70463 22 229 286 6 0 7 27 0 3 32 4 9 85 0 2 355 chain 28361 chr2 243199373 + 170543371 170543725 THE1A 353 - 0 353 91727 243 2 1 109 chain 130336 chr2 243199373 + 170543730 170545414 THE1A-int 1579 - 5 1579 28013 11 1 0 282 0 2 923 117 0 18 0 6 332 chain 37983 chr2 243199373 + 170556267 170556984 L1PA11 4918 - 471 1020 72158 41 13 9 10 1 0 25 5 6 22 4 0 35 167 5 185 7 8 103 1 0 18 1 3 79 chain 22954 chr2 243199373 + 170563407 170563686 AluY 311 + 0 295 115829 64 0 16 12 1 0 40 0 1 162 chain 16024 chr2 243199373 + 170597315 170597548 Tigger3b 1229 - 659 876 138299 32 2 1 54 15 0 130 chain 8679 chr2 243199373 + 170611249 170611359 MSTB1-int 1597 + 0 110 167308 110 chain 5821 chr2 243199373 + 170613883 170613982 MSTB1 431 + 0 103 186930 14 6 8 35 5 7 39 chain 166595 chr2 243199373 + 170641530 170643860 SVA_F 1814 - 0 1804 22446 10 2 0 590 410 0 252 128 14 11 0 1 38 1 0 888 chain 10895 chr2 243199373 + 170642160 170642391 SVA_F 1814 - 627 852 80966 10 1 0 26 1 0 13 1 0 126 3 1 10 1 0 39 chain 12060 chr2 243199373 + 170642391 170642523 SVA_F 1814 - 676 808 136589 132 chain 2028 chr2 243199373 + 170642794 170642837 SVA_F 1814 - 1355 1440 80966 7 0 39 15 4 7 17 chain 2252 chr2 243199373 + 170642881 170642922 SVA_F 1814 - 874 915 166731 41 chain 6115 chr2 243199373 + 170672788 170672859 U3 216 + 0 71 184309 71 chain 130524 chr2 243199373 + 170672859 170674428 L1PA6 6164 + 4554 6162 27957 123 0 2 355 0 8 94 0 1 180 0 6 6 1 0 223 1 4 289 0 16 235 10 14 52 chain 23768 chr2 243199373 + 170693717 170694006 AluSp 311 + 13 300 111662 255 0 1 4 1 0 19 2 0 8 chain 5083 chr2 243199373 + 170696295 170696377 MLT1A1-int 1737 - 334 430 194262 36 9 23 37 chain 44106 chr2 243199373 + 170696377 170696922 LTR19B 566 - 0 566 64077 52 0 1 35 3 2 14 0 7 17 0 1 31 0 12 348 0 1 45 chain 128058 chr2 243199373 + 170697859 170699364 LTR12C 1709 + 0 1709 28555 104 5 4 201 0 1 4 1 0 483 0 200 114 1 0 6 2 0 107 0 4 413 0 4 64 chain 44391 chr2 243199373 + 170705371 170705958 LTR66 600 - 0 600 63700 48 2 0 47 0 32 16 14 1 53 2 0 100 2 0 303 chain 19300 chr2 243199373 + 170710435 170710692 L1PA8 5853 + 5597 5850 129241 11 2 0 132 2 1 19 1 0 90 chain 131110 chr2 243199373 + 170711859 170713335 SVA_B 1603 - 0 1558 27831 317 7 8 262 0 82 180 1 0 709 chain 2975 chr2 243199373 + 170716093 170716125 L1MEc 1507 - 646 678 225521 32 chain 43171 chr2 243199373 + 170717218 170717773 MLT2A2 560 - 0 560 65210 271 4 0 82 6 7 153 3 11 36 chain 85673 chr2 243199373 + 170756018 170757075 L1PA7 6471 - 1 1072 41283 5 2 0 141 18 26 136 0 1 39 1 0 109 0 4 305 0 1 72 7 10 222 chain 92158 chr2 243199373 + 170775919 170776988 L1PA4 6152 + 5087 6151 38916 164 3 6 543 11 5 341 2 0 5 chain 20674 chr2 243199373 + 170792558 170792859 AluSp 311 - 6 302 125056 10 5 0 81 1 33 8 32 0 164 chain 99906 chr2 243199373 + 170793049 170794178 L1PA5 6144 - 16 1160 36809 585 0 15 544 chain 3181 chr2 243199373 + 170796681 170796728 L1MA4 2864 - 63 108 221283 35 2 0 10 chain 21348 chr2 243199373 + 170808962 170809213 AluSc 308 + 38 289 122696 251 chain 33937 chr2 243199373 + 170813824 170814230 L1PA5 6144 + 5736 6142 77719 253 7 0 10 0 7 136 chain 127569 chr2 243199373 + 170826843 170828240 L1PA3long 6157 - 8 1404 28678 64 1 0 1332 chain 161091 chr2 243199373 + 170828241 170830033 L1PA3long 6157 + 2960 4753 23176 109 1 0 289 0 2 1393 chain 13534 chr2 243199373 + 170837127 170837289 L1PA2 6032 - 1 163 146229 162 chain 25207 chr2 243199373 + 170856360 170856669 AluSp 311 + 9 311 103699 54 3 0 230 4 0 18 chain 6963 chr2 243199373 + 170904563 170904649 MER72B 755 - 545 631 177731 86 chain 8627 chr2 243199373 + 170919990 170920224 Tigger7 736 + 0 214 167605 18 46 50 83 55 31 32 chain 62540 chr2 243199373 + 170928406 170929092 L1PA3long 6157 + 5471 6157 51660 686 chain 278509 chr2 243199373 + 170971314 170975804 HERVK22-int 3844 + 0 3844 14723 43 3 0 347 0 3 348 0 16 247 0 3 839 0 4 39 6 8 320 5 6 11 0 3 87 0 1 547 1 2 164 0 1 4 2 1 11 6 0 19 1 0 45 1 0 5 1 0 20 1 0 36 2 1 17 2 0 39 23 18 37 2 0 14 142 104 21 10 6 28 1 0 5 807 194 45 0 1 40 1 0 86 1 0 8 chain 533807 chr2 243199373 + 170982119 170988582 L1PA7 6471 + 6 6470 3726 197 29 31 7 0 1 44 0 2 124 7 0 4 0 1 816 0 2 389 1 0 1008 8 0 129 0 2 320 0 2 101 2 1 37 1 2 267 11 4 339 1 0 406 3 4 279 0 4 139 0 4 185 0 4 121 1 0 493 0 2 119 0 1 24 1 0 120 4 5 175 0 1 385 2 1 7 3 0 7 0 1 147 chain 50344 chr2 243199373 + 170989945 170990578 L1PA6 6164 + 5535 6161 58760 25 0 1 418 3 1 27 2 0 9 7 5 133 2 0 7 chain 28255 chr2 243199373 + 170992023 170992321 AluYk12 309 - 11 309 92092 298 chain 152972 chr2 243199373 + 171005572 171007420 SVA_D 2077 + 59 2068 24235 518 80 0 27 40 0 83 0 40 160 25 167 6 0 1 252 0 98 657 chain 15347 chr2 243199373 + 171035971 171036290 MSTD 398 + 73 398 140346 59 112 118 30 0 1 46 1 0 71 chain 42734 chr2 243199373 + 171051155 171052442 MLT2A2 560 - 0 560 65739 102 0 12 298 0 1 83 742 2 62 chain 231343 chr2 243199373 + 171063759 171067438 MER61-int 3695 - 107 3690 17238 102 8 7 35 25 24 25 1 3 38 0 1 10 21 20 67 1 2 4 1 0 71 0 1 4 0 7 10 14 5 13 15 1 75 1 0 57 26 24 17 38 37 17 64 62 79 1 6 18 6 5 127 6 0 189 15 16 10 11 0 250 1 0 3 2 0 14 0 1 5 0 5 315 0 8 91 0 4 31 0 1 79 0 1 6 1 0 57 0 4 105 2 0 30 0 5 40 1 0 66 29 12 48 0 1 15 1 0 54 18 1 10 0 5 24 0 1 12 1 0 146 10 13 18 0 1 54 10 8 20 0 9 44 1 2 20 0 1 146 53 56 84 0 1 60 15 1 16 0 1 62 3 0 5 5 1 54 1 0 18 2 1 55 38 0 122 10 11 41 14 0 19 chain 12464 chr2 243199373 + 171104997 171105392 MLT1D 503 - 88 477 150403 45 1 2 16 1 0 59 147 150 16 54 45 56 chain 68152 chr2 243199373 + 171119813 171120760 LTR5_Hs 974 - 0 974 49181 123 1 23 45 7 7 105 1 2 9 0 1 167 28 0 30 0 4 40 7 5 60 2 0 5 0 1 52 0 6 167 1 25 97 chain 55580 chr2 243199373 + 171136928 171137796 L1PA14 3548 - 93 921 55369 41 1 0 16 1 0 11 1 0 8 68 47 40 4 5 66 1 0 83 2 1 6 2 0 13 11 7 106 8 4 48 2 0 14 3 1 249 1 0 62 chain 22617 chr2 243199373 + 171166697 171167363 MER4E1 777 - 2 366 117502 186 318 0 33 16 20 38 3 14 31 6 7 35 chain 9547 chr2 243199373 + 171250676 171250792 MER85 139 + 0 126 162847 89 0 10 27 chain 9534 chr2 243199373 + 171258641 171258773 MER85 139 - 0 139 162916 39 0 11 42 4 0 47 chain 4793 chr2 243199373 + 171270578 171270685 L1MD 993 - 212 337 197432 45 15 34 16 12 11 19 chain 6814 chr2 243199373 + 171289396 171289520 Tigger3b 1229 + 770 860 178849 61 34 0 29 chain 35115 chr2 243199373 + 171290802 171291269 LTR10F 562 - 0 562 76032 87 2 0 180 0 1 6 28 114 100 0 6 31 0 4 33 chain 44493 chr2 243199373 + 171297909 171298547 MER41B 635 - 0 635 63587 317 0 1 7 0 4 111 16 13 6 5 0 22 28 29 75 1 0 50 chain 101796 chr2 243199373 + 171299015 171300185 L1PA5 6144 - 0 1183 36319 64 0 1 531 0 8 264 1 5 310 chain 4130 chr2 243199373 + 171315866 171315937 LTR12E 1234 - 476 589 205508 23 0 41 21 7 8 20 chain 9133 chr2 243199373 + 171336621 171336793 MER21A 919 + 21 255 164895 49 1 0 8 8 22 21 0 13 18 4 3 22 8 0 23 0 45 10 chain 14311 chr2 243199373 + 171338964 171339145 THE1B 368 + 188 368 143528 99 7 6 75 chain 5224 chr2 243199373 + 171346280 171346345 MLT2D 439 - 250 315 192787 65 chain 22395 chr2 243199373 + 171372873 171373170 AluY 311 + 4 300 118506 94 4 2 32 0 1 10 1 4 6 3 0 147 chain 25173 chr2 243199373 + 171403552 171403857 AluY 311 + 5 300 103889 128 11 1 166 chain 32755 chr2 243199373 + 171470071 171470517 MLT2A1 477 + 0 477 79606 168 5 2 41 11 6 84 6 7 76 5 43 50 chain 79143 chr2 243199373 + 171472169 171473067 MER11D 897 - 0 897 43981 607 6 5 285 chain 40377 chr2 243199373 + 171473067 171473530 HERVK11D-int 613 - 0 460 68767 294 3 1 30 1 0 135 chain 77907 chr2 243199373 + 171475045 171475960 MER11D 897 - 5 897 44563 261 0 4 8 23 0 334 4 0 285 chain 530795 chr2 243199373 + 171479084 171485181 L1PA5 6144 - 0 6141 4107 1301 4 5 486 0 8 1059 0 10 29 0 3 934 0 3 135 0 4 529 4 0 121 0 1 506 0 1 330 0 3 537 1 15 121 chain 458764 chr2 243199373 + 171486447 171492127 L1PA5 6144 + 1 6137 8451 107 16 30 15 59 58 64 24 25 85 13 21 12 5 4 155 0 1 206 0 1 26 0 17 119 26 1 690 4 0 194 3 409 204 0 11 29 0 1 73 0 4 231 0 5 196 5 1 180 6 5 241 10 23 360 0 1 403 0 5 414 1 0 241 1 0 424 1 5 173 0 4 497 1 0 25 1 0 140 chain 25343 chr2 243199373 + 171538543 171538837 AluSp 311 - 18 311 102997 151 0 1 15 2 0 126 chain 23534 chr2 243199373 + 171543748 171544042 AluSx4 309 + 9 305 112938 225 11 12 21 0 1 37 chain 22272 chr2 243199373 + 171549246 171549526 AluSc8 310 + 10 295 119026 122 0 3 144 1 3 13 chain 4656 chr2 243199373 + 171559894 171559961 MSTA 426 + 336 405 198997 43 1 3 23 chain 13109 chr2 243199373 + 171591189 171591398 MER4D 903 + 0 207 147814 50 1 0 25 1 0 40 1 0 14 24 25 53 chain 7331 chr2 243199373 + 171601564 171601671 MLT1C 463 - 301 400 175219 24 1 0 14 6 0 38 1 0 23 chain 23730 chr2 243199373 + 171620437 171620735 AluY 311 + 0 299 111880 47 1 7 78 0 1 74 7 1 91 chain 21356 chr2 243199373 + 171647958 171648204 AluY 311 + 39 287 122661 84 1 3 161 chain 8248 chr2 243199373 + 171739994 171740131 L1PB1 5432 - 5 133 169694 4 1 0 5 1 0 27 1 0 21 1 0 24 2 0 19 3 0 28 chain 4228 chr2 243199373 + 171741135 171741184 MLT1F1 559 + 494 543 204203 49 chain 13833 chr2 243199373 + 171763947 171764127 L1P3 4156 - 962 1146 145117 92 1 5 87 chain 9662 chr2 243199373 + 171766005 171766328 L1MB5 1630 - 52 487 162285 20 2 0 5 136 176 49 1 75 13 11 12 60 5 4 21 chain 4000 chr2 243199373 + 171771675 171771721 LTR12C 1709 - 644 690 207387 46 chain 81340 chr2 243199373 + 171772472 171773468 LTR13 1007 + 0 1006 43027 380 1 6 242 2 1 156 7 9 7 2 0 11 0 1 126 0 5 62 chain 22009 chr2 243199373 + 171833967 171834368 LTR7 482 - 0 482 120185 49 12 14 91 1 0 4 1 12 20 0 31 12 1 0 24 0 1 36 56 5 31 9 98 54 chain 327626 chr2 243199373 + 171835631 171839493 HERVH-int 3825 - 0 3825 12285 59 0 5 105 3 0 187 2 1 989 0 2 179 0 1 293 0 4 309 0 5 456 16 1 129 0 2 255 2 5 59 1 0 82 1 0 48 22 19 11 1 0 15 28 0 24 1 0 9 2 1 36 5 0 225 0 1 308 chain 27663 chr2 243199373 + 171839495 171839896 LTR7 482 - 0 482 94173 49 12 14 95 0 10 34 1 0 19 5 37 109 9 47 68 chain 11439 chr2 243199373 + 171858586 171858750 Tigger2 2703 - 1563 1739 154537 31 13 25 120 chain 6140 chr2 243199373 + 171868524 171868666 Tigger4a 237 - 1 156 184088 18 13 14 20 33 45 58 chain 21534 chr2 243199373 + 171872310 171872583 AluSp 311 + 11 277 122028 31 15 8 227 chain 4793 chr2 243199373 + 171890195 171890270 MADE1 96 - 3 96 197434 41 0 2 5 6 22 23 chain 13756 chr2 243199373 + 171891399 171891568 THE1B 368 + 0 183 145416 44 0 15 113 1 0 11 chain 24214 chr2 243199373 + 171909877 171910170 AluSc 308 - 15 308 109121 293 chain 26036 chr2 243199373 + 171924124 171924496 L1PA7 6471 - 1 364 99879 154 49 40 169 chain 132908 chr2 243199373 + 171926991 171929784 L1MA3 4352 - 316 2170 27443 121 4 5 123 1 5 554 302 0 16 2 1 108 3 0 59 1 0 160 17 0 98 0 2 201 6 5 47 666 37 80 0 2 5 4 5 32 0 4 53 1 0 112 0 2 17 chain 8384 chr2 243199373 + 171943880 171944237 L1MEf 1413 + 447 833 168937 27 45 59 14 1 0 9 73 93 20 72 71 55 1 0 15 2 0 23 chain 4699 chr2 243199373 + 171945190 171945253 HAL1 992 + 406 471 198542 41 0 2 22 chain 24796 chr2 243199373 + 171971684 171971982 AluSp 311 - 15 311 105909 164 5 0 38 0 3 91 chain 7663 chr2 243199373 + 171990212 171990363 Tigger4b 360 - 0 152 173148 28 43 44 80 chain 29488 chr2 243199373 + 172028996 172029401 MSTA 426 + 0 425 86675 107 8 29 55 1 5 11 3 0 29 2 0 189 chain 3298 chr2 243199373 + 172032314 172032350 MER5B 177 + 2 38 219015 36 chain 23287 chr2 243199373 + 172034306 172034596 AluSp 311 - 15 300 114269 176 1 0 38 9 5 66 chain 3070 chr2 243199373 + 172058606 172058641 MER53 195 + 25 60 223566 35 chain 23606 chr2 243199373 + 172079626 172079991 L1MA4 2864 - 475 831 112546 55 3 0 98 28 26 20 1 0 72 1 0 20 3 0 23 0 1 41 chain 7819 chr2 243199373 + 172114293 172114452 L1MA3 4352 - 203 337 172191 30 52 27 77 chain 17584 chr2 243199373 + 172126354 172126764 MSTA 426 - 23 420 134040 14 6 0 72 72 79 19 34 18 47 24 25 21 4 5 97 chain 14661 chr2 243199373 + 172146755 172146964 HSMAR2 1300 + 6 210 142383 10 2 1 48 1 3 125 6 0 17 chain 22638 chr2 243199373 + 172159712 172159988 AluSp 311 - 23 298 117383 156 1 0 119 chain 105559 chr2 243199373 + 172168296 172169637 THE1B-int 1605 + 17 1428 35359 255 1 7 108 1 2 6 0 64 229 13 13 702 1 0 25 chain 34016 chr2 243199373 + 172179283 172179701 MER41A 554 - 124 543 77596 125 0 1 293 chain 534993 chr2 243199373 + 172206483 172212619 L1PA5 6144 - 9 6144 3592 1203 0 1 784 0 4 110 4 5 82 2 0 243 7 0 863 5 6 321 0 6 123 0 3 363 0 1 781 2 1 65 9 0 504 1 2 664 chain 47661 chr2 243199373 + 172221542 172222127 LTR14C 587 + 0 587 60728 276 5 7 304 chain 161185 chr2 243199373 + 172229011 172230817 L1PA5 6144 - 16 1857 23167 833 0 4 359 0 1 459 0 30 155 chain 316589 chr2 243199373 + 172234534 172239230 L1PA8 5853 + 1777 5853 12738 128 0 2 192 321 0 425 5 4 4 0 1 348 5 1 73 0 4 26 0 5 31 0 1 69 0 1 106 0 4 143 0 1 36 3 0 113 0 2 501 5 6 515 18 8 80 0 3 398 0 6 169 0 4 7 336 27 343 1 0 44 2 0 64 2 0 5 1 2 9 2 1 51 7 6 14 1 0 93 chain 19410 chr2 243199373 + 172271283 172271635 THE1B 368 + 0 356 128921 111 14 15 51 59 63 66 7 6 44 chain 126028 chr2 243199373 + 172279798 172281382 THE1C-int 1605 + 0 1605 29090 17 1 3 88 1 4 140 12 10 67 0 6 105 5 12 425 0 1 4 1 0 635 0 5 83 chain 31273 chr2 243199373 + 172281382 172281759 THE1C 375 + 0 375 82035 183 1 0 167 1 0 25 chain 12088 chr2 243199373 + 172306594 172306882 L1PB1 5432 + 5159 5422 151843 9 2 0 52 2 1 15 1 0 45 83 65 24 1 0 21 1 0 8 1 0 23 chain 7234 chr2 243199373 + 172323829 172323917 Tigger2 2703 + 2557 2645 175871 72 0 1 4 1 0 11 chain 5049 chr2 243199373 + 172341527 172341653 L1ME2z 1083 - 356 473 194647 35 20 18 24 5 4 26 1 0 3 5 0 7 chain 3846 chr2 243199373 + 172345349 172345433 MER94 134 - 10 94 209692 43 24 24 17 chain 34033 chr2 243199373 + 172354127 172354958 LTR7B 505 - 0 505 77574 25 2 0 5 0 1 20 14 13 186 1 0 6 0 22 28 68 0 75 308 31 93 chain 3885 chr2 243199373 + 172363598 172363643 MADE1 96 + 1 46 209096 45 chain 2953 chr2 243199373 + 172410597 172410633 MER51A 677 - 420 456 226030 36 chain 4743 chr2 243199373 + 172415597 172415690 MER4D 903 - 21 112 197990 13 1 0 22 23 22 34 chain 27973 chr2 243199373 + 172416546 172416870 LTR17 781 - 457 781 93099 324 chain 120390 chr2 243199373 + 172417184 172418613 HERV17-int 4347 - 0 1491 30908 263 1 17 102 1 23 184 16 0 262 1 0 128 0 38 189 1 0 56 0 1 7 0 3 218 chain 19520 chr2 243199373 + 172423889 172424191 THE1C 375 - 21 304 128591 67 5 6 167 8 7 25 19 0 11 chain 3744 chr2 243199373 + 172424993 172425034 MLT1G1 539 - 0 41 211272 41 chain 22665 chr2 243199373 + 172432935 172433320 MER84 505 - 103 499 117245 38 9 11 14 15 11 143 1 5 4 1 0 43 12 10 74 13 24 9 0 1 9 chain 27043 chr2 243199373 + 172433738 172434045 AluSp 311 - 3 310 96137 307 chain 37191 chr2 243199373 + 172434632 172435153 MER41B 635 - 123 635 73248 44 24 17 33 5 0 253 0 1 35 1 2 10 0 2 23 1 0 92 chain 8129 chr2 243199373 + 172452964 172453209 MER39B 650 - 7 274 170341 19 20 22 43 22 19 6 5 0 30 63 91 37 chain 48191 chr2 243199373 + 172473794 172474327 L1PA3long 6157 + 5620 6156 60329 203 0 1 185 0 2 145 chain 16158 chr2 243199373 + 172476611 172476818 LTR23 429 - 29 236 137872 74 0 1 51 1 0 81 chain 74009 chr2 243199373 + 172495964 172497052 L1MA3 4352 - 209 1277 46507 24 69 36 178 1 2 337 2 8 8 3 0 122 0 1 6 22 31 6 1 0 309 chain 7600 chr2 243199373 + 172497569 172497658 L1MA3 4352 - 474 563 173542 89 chain 194427 chr2 243199373 + 172497802 172499998 L1PA4 6152 - 0 2212 19636 6 0 5 131 3 6 20 1 2 480 0 1 193 0 4 1063 0 1 133 0 1 166 chain 343682 chr2 243199373 + 172500000 172503923 L1P1 4361 - 429 4360 11791 45 0 1 197 0 1 981 1 0 226 0 1 255 0 1 756 1 0 524 0 4 41 0 1 171 1 2 724 chain 14421 chr2 243199373 + 172507985 172508193 L1M1 2793 - 1218 1422 143145 17 23 19 168 chain 25162 chr2 243199373 + 172567398 172567678 L1PA5 6144 - 18 298 103952 280 chain 12244 chr2 243199373 + 172593480 172593860 MLT1C 463 - 17 399 151237 102 205 213 7 6 0 60 chain 512111 chr2 243199373 + 172611475 172618503 L1PA7 6471 - 19 6471 5966 93 0 5 40 0 1 24 0 12 129 314 0 293 4 0 140 0 3 87 1 0 5 0 14 466 31 24 30 4 5 410 0 8 96 0 3 50 0 3 197 13 16 40 0 1 58 1 2 200 3 0 161 1 0 6 12 17 239 0 3 48 3 2 18 1 0 260 0 4 20 0 4 195 0 3 54 0 1 69 0 4 248 0 1 57 0 4 72 308 0 268 2 1 291 1 0 39 0 1 134 10 0 9 0 10 34 4 0 506 4 8 62 5 9 285 18 10 52 24 7 377 0 1 260 1 2 141 chain 5952 chr2 243199373 + 172628758 172629063 L1MC1 2226 + 1992 2195 185661 54 1 0 4 44 13 13 154 85 23 1 0 11 chain 133573 chr2 243199373 + 172630563 172632044 SVA_C 1631 + 0 1628 27306 12 1 18 687 0 40 80 0 88 430 0 2 271 chain 59859 chr2 243199373 + 172665212 172665914 L1PA6 6164 - 2 697 52893 158 8 1 536 chain 160522 chr2 243199373 + 172722362 172724171 SVA_D 2077 - 9 2065 23266 329 0 10 284 0 99 163 49 0 90 1 0 39 1 138 266 0 40 441 0 11 146 chain 2578 chr2 243199373 + 172723138 172723187 SVA_D 2077 - 718 767 113607 49 chain 24692 chr2 243199373 + 172730453 172730743 AluSp 311 + 0 289 106485 71 1 0 218 chain 3933 chr2 243199373 + 172754503 172754609 L1MC 810 + 610 709 208364 19 51 44 36 chain 156584 chr2 243199373 + 172755720 172757482 SVA_D 2077 + 0 2077 23786 10 1 7 886 1 0 5 0 85 41 1 2 13 1 0 4 0 1 38 0 1 126 1 0 1 0 225 627 1 0 5 chain 10077 chr2 243199373 + 172768961 172769082 LTR8 732 - 0 121 160187 121 chain 22405 chr2 243199373 + 172777272 172777558 AluSp 311 + 13 301 118460 106 0 1 14 7 8 159 chain 3384 chr2 243199373 + 172783955 172784072 L1MC4 1079 - 889 1005 217391 15 2 0 3 13 0 9 39 53 36 chain 88782 chr2 243199373 + 172796594 172797718 Charlie3 2679 - 1182 2308 40087 137 0 1 145 0 3 257 1 0 37 0 1 179 0 5 346 7 0 15 chain 3166 chr2 243199373 + 172806372 172806409 L1MC4 1079 - 824 861 221611 37 chain 28536 chr2 243199373 + 172975672 172975972 AluYf4 310 + 0 300 91018 300 chain 8441 chr2 243199373 + 172987766 172987892 Tigger3b 1229 + 598 730 168617 25 0 4 25 1 5 43 1 0 4 1 0 26 chain 84634 chr2 243199373 + 172988444 172989437 L1PA6 6164 - 10 1021 41668 149 2 4 174 0 1 88 0 2 105 0 9 306 0 4 169 chain 98575 chr2 243199373 + 173004003 173006303 Tigger1 2417 + 401 1808 37131 45 0 1 12 306 0 173 35 54 58 13 9 241 0 5 81 0 4 262 8 6 32 0 3 77 625 0 202 6 5 12 0 13 112 chain 116882 chr2 243199373 + 173015340 173016922 L1PB1 5432 - 30 1574 32167 11 1 0 21 1 0 17 76 57 15 1 0 45 1 0 15 2 1 52 2 0 11 4 0 13 3 2 4 1 0 24 3 0 11 5 0 17 7 9 80 4 3 370 5 6 760 chain 16966 chr2 243199373 + 173017426 173017646 L1PA8 5853 + 5637 5853 135676 41 2 1 8 1 0 53 2 1 19 1 0 93 chain 20399 chr2 243199373 + 173029576 173031894 THE1A 353 + 0 330 125897 104 8 7 81 2015 28 110 chain 3216 chr2 243199373 + 173030015 173030050 LTR7 482 - 8 43 220628 35 chain 129398 chr2 243199373 + 173031917 173033491 THE1A-int 1579 + 0 1579 28224 163 13 9 128 0 1 5 0 1 288 1 7 54 6 1 376 0 4 301 2 4 237 chain 27904 chr2 243199373 + 173033491 173033834 THE1A 353 + 0 341 93353 110 1 0 92 2 1 138 chain 561017 chr2 243199373 + 173051995 173058142 L1PA3long 6157 - 0 6151 314 2083 0 1 1837 0 1 1642 0 1 210 0 1 375 chain 23467 chr2 243199373 + 173064353 173064630 AluYc3 301 - 23 300 113283 277 chain 12627 chr2 243199373 + 173083999 173084545 L1MB7 1623 - 194 747 149738 7 1 0 34 223 217 83 132 146 66 chain 15721 chr2 243199373 + 173086903 173087185 L1PB1 5432 + 5134 5391 139206 13 1 0 9 9 5 6 2 0 53 2 1 16 1 0 44 1 0 22 14 5 17 10 7 14 2 0 24 1 0 21 chain 40821 chr2 243199373 + 173101191 173101744 MER41A 554 - 0 554 68145 73 7 12 56 6 0 119 0 1 26 13 15 198 1 0 54 chain 2732 chr2 243199373 + 173120247 173120308 MIR 256 + 87 148 229715 16 17 16 14 0 1 14 chain 519953 chr2 243199373 + 173129439 173135592 L1PA6 6164 - 4 6163 5166 6 3 0 594 5 8 331 0 1 321 4 6 317 2 1 1140 0 1 493 7 6 337 12 16 61 2 0 120 0 3 72 0 1 576 0 4 299 1 0 270 0 1 28 6 12 203 0 4 111 17 0 186 2 1 63 1 0 302 1 3 74 0 1 186 chain 43969 chr2 243199373 + 173139145 173139696 MER41A 554 - 0 554 64237 253 1 5 22 2 1 273 chain 19829 chr2 243199373 + 173146816 173147178 Tigger3 1187 - 68 436 127718 19 43 41 58 5 3 20 1 0 32 5 15 16 17 19 98 1 0 47 chain 15604 chr2 243199373 + 173160112 173160481 L1PB1 5432 - 10 349 139571 23 1 0 7 2 1 21 1 0 24 2 0 14 1 0 5 3 1 12 27 18 15 1 0 45 6 5 10 2 1 50 4 2 9 7 3 12 8 6 24 13 11 20 chain 565167 chr2 243199373 + 173179998 173186025 L1HS 6032 + 4 6032 197 5595 0 1 432 chain 28317 chr2 243199373 + 173209589 173209910 L1PA4 6152 - 9 329 91877 245 1 0 75 chain 7378 chr2 243199373 + 173228401 173228498 MER30B 195 + 101 195 174915 53 3 0 41 chain 24058 chr2 243199373 + 173230004 173230289 AluSc 308 - 23 308 109993 285 chain 43363 chr2 243199373 + 173246539 173247675 MER41A 554 + 13 554 64977 112 0 1 254 601 0 89 1 6 79 chain 14028 chr2 243199373 + 173259626 173259785 L1PA3long 6157 + 5998 6157 144472 159 chain 35520 chr2 243199373 + 173284089 173284552 MER87B 500 - 33 500 75527 11 4 3 384 1 6 63 chain 3716 chr2 243199373 + 173377733 173377776 LTR8 732 - 40 84 211685 25 0 1 18 chain 289517 chr2 243199373 + 173391716 173395037 L1PA5 6144 - 1 3308 14052 17 1 0 836 0 3 265 1 0 144 4 6 291 3 0 895 0 2 737 16 0 111 chain 164791 chr2 243199373 + 173401887 173403783 SVA_D 2077 + 1 2056 22680 173 0 22 13 1 0 437 0 1 267 1 87 33 1 2 6 0 1 180 49 0 111 0 98 624 chain 3537 chr2 243199373 + 173402999 173403048 SVA_D 2077 + 1047 1096 80895 49 chain 3963 chr2 243199373 + 173406825 173406916 LTR7A 91 + 0 85 207933 14 2 0 7 5 3 15 2 1 35 2 1 9 chain 161200 chr2 243199373 + 173406931 173409000 HERVH-int 3825 + 0 2117 23164 336 9 8 20 6 7 102 10 12 47 1 0 38 2 1 9 1 0 23 82 115 21 0 1 4 1 0 12 0 1 22 1 0 160 0 1 347 1 0 479 0 1 212 0 15 123 chain 37157 chr2 243199373 + 173409155 173409602 L1PA7 6471 + 6022 6469 73302 447 chain 59800 chr2 243199373 + 173414383 173415123 MER4E1 777 - 16 765 52930 60 2 1 149 2 10 77 1 2 444 0 1 5 chain 8694 chr2 243199373 + 173422880 173422979 HY3 101 - 1 100 167222 99 chain 5787 chr2 243199373 + 173433736 173433844 MIRb 242 + 23 129 187300 22 27 25 59 chain 64309 chr2 243199373 + 173451867 173452768 LTR12D 1347 - 0 942 50880 63 0 4 26 11 15 157 1 0 30 4 3 27 4 0 304 8 25 35 4 0 84 11 42 111 10 5 11 chain 53722 chr2 243199373 + 173455010 173455646 LTR12_ 688 - 2 687 56525 153 0 1 19 1 0 322 0 49 141 chain 30823 chr2 243199373 + 173485872 173487727 MLT2A1 477 + 1 468 82828 22 0 5 18 0 1 28 2 0 89 9 6 213 9 2 10 1 0 10 4 0 12 1396 19 32 chain 18104 chr2 243199373 + 173503319 173503551 LTR12D 1347 + 405 667 132590 129 3 34 17 9 8 74 chain 512976 chr2 243199373 + 173513108 173519495 L1PA6 6164 + 0 6162 5882 139 8 20 42 0 1 307 2 1 418 1 30 298 1 0 650 0 5 302 8 12 379 0 1 109 1 7 441 0 3 24 0 1 54 1 5 1156 1 0 592 303 0 269 0 1 14 0 1 129 2 5 13 0 1 366 4 13 353 chain 78843 chr2 243199373 + 173522948 173523988 MER11A 1151 + 6 1151 44128 49 0 99 58 4 0 82 4 0 149 0 1 92 0 7 16 1 0 246 2 1 56 3 0 169 6 5 40 12 16 16 4 12 31 chain 19952 chr2 243199373 + 173524023 173524321 MER34 540 + 246 540 127296 18 8 11 214 22 15 36 chain 28275 chr2 243199373 + 173531080 173531568 LTR10A 586 - 15 540 92019 57 0 1 237 0 39 11 10 29 16 74 44 21 14 15 6 0 6 14 0 1 28 chain 5036 chr2 243199373 + 173553595 173554015 LTR12F 595 - 0 540 98493 244 0 64 36 90 0 9 1 0 17 0 143 21 0 4 2 chain 146237 chr2 243199373 + 173554037 173555731 L1PA6 6164 + 4463 6162 25125 1540 1 0 28 0 6 125 chain 660 chr2 243199373 + 173555740 173555795 LTR12F 595 - 540 595 98493 55 chain 9945 chr2 243199373 + 173559871 173559990 MER6A 605 + 457 576 160857 119 chain 109157 chr2 243199373 + 173564488 173565748 SVA_B 1603 - 3 1601 34403 20 0 1 578 0 281 56 0 37 586 0 19 20 chain 4788 chr2 243199373 + 173625065 173625144 L1MDa 1598 + 528 606 197483 39 8 7 32 chain 106623 chr2 243199373 + 173667327 173668686 THE1B-int 1605 - 0 1389 35087 263 0 2 113 7 0 153 11 13 16 4 5 76 3 9 364 5 6 128 0 25 216 chain 33115 chr2 243199373 + 173682362 173683051 L1PB1 5432 + 4861 5422 79034 66 0 1 175 1 2 9 101 0 24 1 0 4 7 6 10 16 10 52 2 1 16 1 0 43 1 0 16 1 0 4 2 0 5 14 6 14 25 21 27 1 0 18 1 0 13 2 1 17 chain 24601 chr2 243199373 + 173689801 173690151 MER47A 366 - 0 353 106992 26 5 6 4 1 0 25 10 12 94 0 1 185 chain 38368 chr2 243199373 + 173703905 173704471 MER41A 554 - 0 554 71622 19 24 11 308 39 40 176 chain 5001 chr2 243199373 + 173708342 173708437 MER46C 351 + 99 183 195131 25 24 13 46 chain 9082 chr2 243199373 + 173716201 173716380 L1PA15 4387 + 4189 4353 165154 18 4 0 9 2 1 50 6 3 44 3 1 12 16 11 15 chain 13296 chr2 243199373 + 173738348 173738974 L1PA7 6471 + 5382 6008 42203 119 0 1 119 1 0 387 chain 249053 chr2 243199373 + 173738990 173741785 L1PA5 6144 - 12 2813 16307 326 0 1 257 0 1 911 0 5 33 2 0 334 3 0 714 0 4 215 chain 9961 chr2 243199373 + 173741801 173742270 L1PA7 6471 + 6019 6470 42203 162 1 0 45 3 1 159 16 0 33 8 9 42 chain 5260 chr2 243199373 + 173806902 173806986 MADE1 96 - 1 96 192408 45 2 18 26 5 0 6 chain 13548 chr2 243199373 + 173886170 173886320 AluY 311 + 137 287 146174 150 chain 28831 chr2 243199373 + 173888934 173889244 AluYa5 310 - 4 310 89756 8 4 0 298 chain 20308 chr2 243199373 + 173903190 173903461 L1PA8 5853 + 5564 5836 126212 18 0 4 24 2 0 69 1 0 11 1 0 50 2 1 16 1 3 76 chain 4510 chr2 243199373 + 173926459 173926539 MADE1 96 - 0 96 200670 23 16 32 41 chain 4685 chr2 243199373 + 173936613 173936730 Charlie1b 519 + 398 519 198700 15 42 47 10 1 0 49 chain 46218 chr2 243199373 + 173958368 173958876 L1PA2 6032 + 5519 6028 61835 176 0 1 332 chain 405058 chr2 243199373 + 173975170 173980586 L1PB1 5432 - 8 5415 9943 4 1 0 16 1 0 13 2 1 20 1 0 14 78 62 14 1 0 43 1 0 16 2 1 49 34 24 9 1 0 24 1 0 11 1 0 64 12 7 228 1 0 165 0 1 16 10 15 592 0 11 272 1 8 120 0 1 281 1 0 9 5 0 22 1 0 209 5 3 166 1 0 24 0 3 52 1 0 65 0 15 39 0 8 115 2 1 99 1 0 132 0 2 267 0 4 485 0 6 117 4 0 77 8 0 7 1 0 163 0 1 16 6 7 75 4 1 513 0 11 7 18 7 99 3 0 72 0 1 16 2 0 348 9 10 31 chain 20341 chr2 243199373 + 173998481 173998744 AluY 311 + 51 308 126097 72 10 4 181 chain 24856 chr2 243199373 + 174028959 174029296 L1PA16 3655 - 576 920 105592 157 1 0 14 0 4 6 1 0 90 1 5 56 0 1 11 chain 27247 chr2 243199373 + 174031630 174031942 AluYk4 311 - 5 311 95440 5 3 0 175 3 0 126 chain 46407 chr2 243199373 + 174038937 174039481 L1PA7 6471 - 6 546 61681 145 12 7 136 0 1 251 chain 5351 chr2 243199373 + 174058976 174059055 MADE1 96 - 1 96 191528 22 3 4 9 0 15 45 chain 23482 chr2 243199373 + 174099798 174100157 MER83C 372 - 13 372 113211 191 13 0 8 24 25 34 1 8 76 1 6 11 chain 25221 chr2 243199373 + 174108345 174108653 AluYk4 311 - 17 311 103636 7 5 0 125 6 0 71 3 0 91 chain 3535 chr2 243199373 + 174112323 174112362 L1MA10 1535 + 1277 1316 214787 39 chain 3116 chr2 243199373 + 174116172 174116206 MIRb 242 + 100 134 222611 34 chain 4567 chr2 243199373 + 174146603 174146660 LTR12C 1709 - 154 211 200038 57 chain 28729 chr2 243199373 + 174151739 174152045 AluYa5 310 - 4 310 90212 306 chain 58288 chr2 243199373 + 174165875 174166612 LTR12 884 - 0 884 53814 507 2 0 24 4 22 49 0 91 53 0 41 73 1 0 24 chain 23552 chr2 243199373 + 174167288 174167606 MER4E 760 - 0 319 112837 119 4 7 99 5 0 4 1 0 48 10 14 28 chain 33660 chr2 243199373 + 174168810 174169671 MER4A1 472 - 0 470 78154 97 410 0 129 0 21 7 1 0 165 1 0 51 chain 26323 chr2 243199373 + 174168914 174169317 LTR7 482 - 0 482 98725 158 0 10 22 0 31 76 51 0 21 7 96 68 chain 16783 chr2 243199373 + 174170157 174170571 LTR54B 464 + 23 464 136160 98 124 62 10 0 100 7 6 0 13 4 0 20 4 5 11 1 0 10 1 0 27 10 9 38 0 1 30 chain 37882 chr2 243199373 + 174173498 174173959 LTR2 463 + 0 463 72304 135 0 1 228 10 11 88 chain 46626 chr2 243199373 + 174183113 174183693 MER4E1 777 - 7 615 61520 13 0 2 211 1 7 103 0 1 85 0 19 167 chain 2865 chr2 243199373 + 174198174 174198204 THE1B 368 + 0 30 227597 30 chain 29269 chr2 243199373 + 174198592 174198905 AluYb9 318 - 6 318 87694 113 1 0 199 chain 6307 chr2 243199373 + 174215583 174215663 Tigger1 2417 - 850 930 182740 80 chain 41325 chr2 243199373 + 174217553 174218087 MER41A 554 + 0 547 67506 55 6 5 127 0 10 203 0 1 60 2 0 8 7 12 66 chain 32798 chr2 243199373 + 174260324 174260749 MER57A1 433 - 0 433 79534 28 3 10 111 4 5 279 chain 3671 chr2 243199373 + 174313532 174313572 LTR41B 718 - 13 53 212374 40 chain 22684 chr2 243199373 + 174322908 174323186 AluY 311 + 8 296 117142 45 1 16 57 0 2 156 7 0 12 chain 27134 chr2 243199373 + 174334118 174334501 THE1B 368 - 0 368 95818 38 20 3 154 2 1 127 0 5 27 3 1 12 chain 22516 chr2 243199373 + 174347323 174347748 L1MA3 4352 - 24 445 117962 14 1 0 19 15 13 22 2 0 10 0 1 13 4 0 77 0 13 40 75 65 106 0 1 27 chain 3416 chr2 243199373 + 174358642 174358684 MADE1 96 - 54 96 216825 42 chain 141296 chr2 243199373 + 174365151 174367135 MER41-int 2638 + 633 2636 25936 52 7 9 41 6 7 27 0 1 29 9 23 186 0 1 200 0 1 116 1 2 30 1 0 44 0 1 141 0 2 13 0 8 101 1 0 50 1 10 69 1 0 59 0 1 19 2 0 25 14 12 53 23 6 56 2 0 74 3 0 16 0 2 142 11 10 24 0 6 80 19 18 236 chain 39992 chr2 243199373 + 174369441 174370010 MER41A 554 - 1 554 69328 213 0 1 80 3 0 5 4 8 10 23 6 22 2 1 207 chain 546102 chr2 243199373 + 174392020 174398045 L1PA3long 6157 - 0 6156 1929 1957 0 1 907 1 0 1058 0 1 990 0 1 118 0 1 219 0 128 73 1 0 550 0 1 151 chain 540482 chr2 243199373 + 174424343 174430778 L1PA7 6471 + 0 6464 2737 148 0 6 6 20 14 295 1 0 52 6 7 329 1 0 303 1 3 467 0 1 309 0 1 491 0 1 204 1 2 59 1 2 705 0 1 97 1 0 115 0 1 40 0 1 220 1 2 689 1 0 7 0 1 751 0 6 20 9 22 243 1 0 686 3 4 75 0 1 77 chain 22046 chr2 243199373 + 174434290 174434536 L1PA4 6152 + 5891 6138 120037 147 0 1 99 chain 17573 chr2 243199373 + 174438643 174438944 L1PA15 4387 - 21 303 134072 10 1 0 26 5 0 14 2 0 42 10 7 50 11 6 26 1 0 55 1 0 26 2 0 5 0 1 14 chain 19285 chr2 243199373 + 174452163 174452403 L1PA8 5853 - 0 243 129273 93 1 0 19 2 1 52 1 0 4 0 6 68 chain 53656 chr2 243199373 + 174465244 174465896 L1PA8 5853 - 0 644 56580 93 1 0 19 2 1 47 1 0 14 1 0 71 2 0 46 1 0 48 2 1 304 chain 5212 chr2 243199373 + 174478224 174478437 MIR 256 + 6 219 192897 9 0 1 4 7 0 12 31 39 56 79 77 15 chain 13214 chr2 243199373 + 174490502 174490688 MER30 238 - 0 201 147414 39 2 0 72 4 21 69 chain 19445 chr2 243199373 + 174501487 174501913 L1MA5A 2387 + 2003 2370 128837 29 2 1 36 1 0 38 1 0 48 2 0 23 6 2 35 3 0 15 28 0 44 73 57 9 1 0 19 1 0 4 1 0 7 chain 5568 chr2 243199373 + 174502467 174502918 L1ME1 1623 + 181 655 189394 53 355 379 38 1 0 4 chain 14812 chr2 243199373 + 174556152 174556308 AluYb8 318 - 0 156 141905 156 chain 29161 chr2 243199373 + 174558994 174559421 L1PB2 3958 + 3422 3838 88247 16 2 0 13 4 0 94 1 0 72 1 0 64 9 8 20 0 1 24 1 2 5 1 0 12 2 0 22 2 1 62 chain 560310 chr2 243199373 + 174564103 174570138 L1PA2 6032 - 0 6032 336 13 2 0 5536 1 0 483 chain 100259 chr2 243199373 + 174590742 174592265 L1PA15 4387 + 2865 4366 36702 272 7 1 29 2 1 115 28 47 153 0 1 9 1 0 63 13 5 13 6 0 106 0 5 128 2 0 20 5 1 57 3 1 40 1 0 166 12 11 22 1 0 34 0 3 17 1 0 23 33 28 31 6 3 41 6 4 14 5 0 27 1 0 10 chain 118362 chr2 243199373 + 174594225 174595529 L1PA4 6152 - 9 1313 31662 1304 chain 2880 chr2 243199373 + 174606837 174606869 FordPrefect_a 431 + 354 386 227376 32 chain 5076 chr2 243199373 + 174617027 174617087 MER20 218 - 67 127 194336 60 chain 110366 chr2 243199373 + 174753391 174755048 THE1B-int 1605 + 0 1605 34102 12 5 6 103 54 0 136 0 1 15 5 2 154 39 22 174 0 12 57 59 70 64 11 12 194 0 1 113 1 0 156 26 22 214 0 1 5 1 0 59 chain 3940 chr2 243199373 + 174762058 174762102 ORSL 269 + 224 268 208263 44 chain 25526 chr2 243199373 + 174838546 174838836 AluSp 311 - 13 303 102113 290 chain 5886 chr2 243199373 + 174872525 174872613 MLT1C 463 - 376 463 186318 55 10 9 23 chain 23173 chr2 243199373 + 174881859 174882139 AluSp 311 + 12 288 114796 257 5 1 18 chain 23651 chr2 243199373 + 174961613 174961887 AluSq4 311 + 10 286 112306 121 0 1 130 0 1 23 chain 20763 chr2 243199373 + 174982628 174982998 MSTA 426 - 0 426 124739 97 9 33 33 54 62 53 16 40 108 chain 16663 chr2 243199373 + 175034770 175034986 AluY 311 + 91 300 136498 35 4 5 156 5 0 8 3 0 5 chain 25021 chr2 243199373 + 175068849 175069140 AluY 311 + 2 294 104677 124 0 1 167 chain 5542 chr2 243199373 + 175076597 175076676 MER33 330 + 213 290 189638 35 1 0 25 2 0 6 0 1 10 chain 28268 chr2 243199373 + 175090640 175090950 AluYa5 310 + 0 305 92051 118 4 0 8 1 0 179 chain 24229 chr2 243199373 + 175115591 175115880 AluYc3 301 + 1 291 109048 112 1 2 176 chain 24504 chr2 243199373 + 175116806 175117097 AluSp 311 + 7 297 107523 170 1 0 120 chain 6479 chr2 243199373 + 175129608 175129709 HY3 101 - 2 101 181398 41 9 8 17 1 0 33 chain 463134 chr2 243199373 + 175134193 175139188 L1PA2 6032 + 1034 6025 8289 790 1 0 3720 3 0 481 chain 364268 chr2 243199373 + 175152724 175156826 L1PA5 6144 + 2024 6135 11249 799 0 1 610 0 3 436 0 1 470 0 4 868 1 0 77 0 1 841 chain 7479 chr2 243199373 + 175180514 175180708 L1PB1 5432 + 5251 5423 174278 20 55 42 13 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 5 chain 3376 chr2 243199373 + 175188440 175188499 L1MC5 759 + 686 741 217548 25 12 8 22 chain 58111 chr2 243199373 + 175224247 175224939 L1PA6 6164 + 5464 6157 53919 510 3 2 4 0 1 131 0 1 44 chain 26752 chr2 243199373 + 175228267 175228624 THE1B 368 - 0 368 97157 75 1 0 101 2 0 11 10 9 113 0 15 44 chain 2329 chr2 243199373 + 175230254 175230279 THE1B 368 - 49 74 234989 25 chain 8573 chr2 243199373 + 175230280 175230381 THE1B 368 - 74 175 167892 101 chain 12038 chr2 243199373 + 175230405 175230562 THE1B 368 - 196 368 152039 113 5 20 39 chain 21999 chr2 243199373 + 175232029 175232300 AluSc8 310 + 4 278 120236 122 0 2 129 0 1 20 chain 11549 chr2 243199373 + 175252616 175252814 MER30 238 - 9 207 154104 27 25 3 26 0 2 5 1 7 34 4 18 76 chain 22876 chr2 243199373 + 175253474 175253780 THE1C 375 + 0 335 116208 115 4 3 65 3 4 82 0 29 37 chain 4814 chr2 243199373 + 175258461 175258568 L1MA10 1535 - 28 122 197187 4 1 0 18 1 4 9 17 5 18 3 0 36 chain 559975 chr2 243199373 + 175269186 175275210 L1PA2 6032 - 3 6029 358 3948 0 2 2076 chain 11982 chr2 243199373 + 175300005 175300179 MER2 342 + 80 253 152284 72 3 0 40 0 1 13 10 11 36 chain 22585 chr2 243199373 + 175306162 175306434 L1PA5 6144 - 0 272 117656 272 chain 59511 chr2 243199373 + 175312756 175314280 L1PA16 3655 + 2560 3415 53098 44 0 1 15 301 2 53 14 13 39 378 0 124 0 1 50 1 0 15 1 0 37 0 1 25 0 2 38 0 6 103 1 0 4 2 4 65 1 0 71 0 1 17 2 0 33 0 1 90 chain 29886 chr2 243199373 + 175313246 175313564 AluYb8 318 - 0 318 85143 318 chain 35343 chr2 243199373 + 175374177 175375009 L1M1 2793 + 1119 1668 75744 55 291 6 70 4 0 18 12 5 52 5 7 19 1 3 7 3 0 2 0 1 6 0 1 22 0 2 164 0 7 27 0 1 54 1 2 5 1 0 13 chain 113342 chr2 243199373 + 175412154 175413839 LTR12C 1709 - 13 1709 33266 71 2 1 29 0 10 70 203 0 287 11 4 65 0 47 198 0 2 75 1 0 2 0 119 248 7 4 75 8 51 44 5 16 54 18 12 212 chain 11454 chr2 243199373 + 175412390 175412529 LTR12C 1709 - 157 296 148818 139 chain 4626 chr2 243199373 + 175417715 175417770 L1MB2 1706 - 214 269 199338 55 chain 11618 chr2 243199373 + 175422567 175422693 L1PA3long 6157 - 1 127 153822 126 chain 10178 chr2 243199373 + 175422693 175422800 U6 107 - 0 107 159725 107 chain 22955 chr2 243199373 + 175429627 175429913 AluSp 311 - 14 302 115825 60 6 8 220 chain 3320 chr2 243199373 + 175454543 175454586 Charlie4a 502 + 280 323 218600 43 chain 22185 chr2 243199373 + 175471885 175472148 AluY 311 + 36 300 119423 96 0 1 167 chain 22378 chr2 243199373 + 175504995 175505237 L1PA3long 6157 + 5915 6157 118597 242 chain 86141 chr2 243199373 + 175535833 175536895 MER11B 1079 + 0 1057 41102 672 16 1 39 0 5 49 5 8 105 0 1 149 0 1 27 chain 46448 chr2 243199373 + 175550097 175550649 MER41A 554 - 0 552 61640 552 chain 26238 chr2 243199373 + 175573831 175574208 LTR12C 1709 - 513 936 99062 40 0 47 181 32 32 59 1 0 64 chain 16776 chr2 243199373 + 175577084 175577309 MER6A 605 + 362 594 136180 179 12 19 34 chain 28809 chr2 243199373 + 175588564 175588930 THE1B 368 - 0 368 89845 18 1 4 178 1 0 168 chain 64312 chr2 243199373 + 175588935 175589710 THE1B-int 1605 - 5 780 50879 426 0 2 97 8 6 244 chain 39381 chr2 243199373 + 175591789 175592305 MER41C 542 + 11 528 70198 38 0 1 102 1 0 158 7 8 210 chain 4241 chr2 243199373 + 175607588 175607644 Ricksha_c 1012 + 94 150 204007 28 0 1 22 1 0 5 chain 8420 chr2 243199373 + 175623151 175623369 Tigger4a 237 + 0 218 168728 25 0 1 6 10 0 45 59 61 14 0 1 10 12 0 13 0 18 24 chain 70862 chr2 243199373 + 175684394 175685177 L1PA3long 6157 - 0 779 47980 395 4 0 384 chain 4590 chr2 243199373 + 175764321 175764379 MER58C 217 + 154 212 199753 58 chain 16714 chr2 243199373 + 175775474 175775652 AluYd8 298 + 116 294 136360 178 chain 26986 chr2 243199373 + 175786330 175786663 THE1C 375 - 42 375 96326 333 chain 5444 chr2 243199373 + 175791906 175791973 MER4A 717 + 650 717 190576 67 chain 138305 chr2 243199373 + 175818169 175820341 L1PB1 5432 + 3473 5411 26435 33 0 7 106 0 6 106 21 0 496 1 0 319 0 1 81 4 1 74 0 2 112 7 10 11 0 1 259 202 16 24 2 1 5 1 0 12 32 12 52 2 1 14 5 4 42 1 0 15 2 0 6 14 6 17 2 0 7 1 0 14 2 0 24 1 0 22 1 0 12 1 0 7 chain 22780 chr2 243199373 + 175826042 175826324 AluSp 311 + 10 287 116677 40 12 7 230 chain 15965 chr2 243199373 + 175844378 175844588 AluSc 308 + 50 260 138471 86 8 5 7 0 3 109 chain 67244 chr2 243199373 + 175846528 175847276 L1PA4 6152 - 0 750 49546 13 0 3 238 1 0 496 chain 26281 chr2 243199373 + 175852806 175853101 AluYg6 310 + 1 297 98900 44 6 7 245 chain 5656 chr2 243199373 + 175898358 175898501 L1MA3 4352 - 0 134 188505 21 19 0 9 10 24 10 1 0 4 4 3 23 2 0 40 chain 8456 chr2 243199373 + 175898965 175899065 L1M1 2793 - 1282 1383 168531 96 0 1 4 chain 241595 chr2 243199373 + 175906907 175909907 L1PA8A 6298 - 42 3117 16692 66 12 20 527 25 71 79 1 4 252 1 0 418 2 1 25 0 3 597 0 2 27 0 6 110 1 2 167 1 0 29 0 1 144 1 0 64 1 2 186 0 8 264 chain 61558 chr2 243199373 + 175941537 175942223 L1PA4 6152 - 11 697 52089 686 chain 156926 chr2 243199373 + 175947617 175949371 L1PA3long 6157 + 4388 6146 23738 587 0 3 412 1 0 10 0 3 495 1 0 248 chain 50306 chr2 243199373 + 175965183 175965760 LTR10C 591 + 0 580 58788 113 0 2 62 0 1 156 1 2 180 1 0 64 chain 134512 chr2 243199373 + 175972254 175973916 SVA_C 1631 + 0 1631 27109 17 10 4 194 1 0 397 0 37 49 1 38 116 98 0 12 1 0 46 1 0 40 1 0 53 0 1 14 1 0 212 0 3 398 chain 3676 chr2 243199373 + 175973043 175973102 SVA_C 1631 + 852 910 148178 12 1 0 46 chain 2936 chr2 243199373 + 175973103 175973137 SVA_C 1631 + 910 944 170858 34 chain 42669 chr2 243199373 + 176013183 176013801 MER4B 649 + 0 639 65817 36 12 18 78 1 0 15 5 6 39 2 0 61 0 28 121 0 3 13 13 1 5 2 0 136 0 1 72 1 0 6 chain 3457 chr2 243199373 + 176020720 176020760 MLT1E2 623 + 23 63 216057 40 chain 22575 chr2 243199373 + 176035290 176035641 THE1C 375 - 8 374 117694 17 1 0 135 16 8 9 0 22 23 19 0 9 5 26 30 0 1 63 1 0 23 chain 7031 chr2 243199373 + 176041236 176041317 HY4 93 - 11 92 177244 81 chain 274005 chr2 243199373 + 176054449 176057613 L1PA5 6144 + 2970 6142 14973 90 0 1 97 1 0 18 1 0 82 0 2 72 0 3 1533 1 2 401 1 5 10 2 1 855 chain 5924 chr2 243199373 + 176069626 176069692 L1PA2 6032 - 2 68 185948 66 chain 19928 chr2 243199373 + 176079856 176080081 L1PA4 6152 - 47 272 127363 225 chain 18998 chr2 243199373 + 176080343 176080573 L1PA5 6144 - 1 229 130117 143 1 0 81 1 0 4 chain 8546 chr2 243199373 + 176091173 176091285 L1MC5 759 + 349 461 168038 112 chain 4615 chr2 243199373 + 176093434 176093528 MER3 215 + 6 113 199455 18 28 41 48 chain 23573 chr2 243199373 + 176094223 176094518 AluY 311 + 0 302 112719 122 1 6 128 0 3 18 2 1 24 chain 25991 chr2 243199373 + 176100396 176100759 L1PA8 5853 + 5496 5853 100047 19 1 2 44 2 1 48 2 0 67 1 0 11 1 0 52 2 1 19 1 0 93 chain 123331 chr2 243199373 + 176103249 176104815 THE1B-int 1605 - 0 1605 29936 19 0 1 969 1 13 132 0 1 13 0 25 432 chain 24527 chr2 243199373 + 176104827 176105137 THE1B 368 - 12 368 107396 62 1 0 35 0 4 61 0 28 111 0 15 40 chain 18406 chr2 243199373 + 176117118 176117346 L1PA6 6164 - 12 240 131758 22 1 3 6 2 0 197 chain 6607 chr2 243199373 + 176121408 176121634 LTR12C 1709 - 537 771 180407 12 80 0 42 15 62 35 17 58 25 chain 23792 chr2 243199373 + 176145276 176145563 AluY 311 + 0 294 111515 47 0 6 79 0 1 161 chain 88368 chr2 243199373 + 176160904 176162293 L1PA10 4194 + 3077 4140 40237 48 0 1 9 326 0 286 0 1 494 0 1 199 3 0 24 chain 28629 chr2 243199373 + 176190931 176191257 LTR17 781 + 0 326 90611 326 chain 6542 chr2 243199373 + 176195111 176195191 MADE1 96 - 0 96 180906 51 0 16 29 chain 6451 chr2 243199373 + 176198387 176198494 MLT1A 405 - 64 168 181629 4 1 0 74 13 11 15 chain 116192 chr2 243199373 + 176202771 176204256 L1PA8A 6298 - 7 1508 32375 29 17 0 69 29 33 153 0 1 55 0 1 82 2 0 380 2 0 67 8 11 322 4 8 30 0 24 236 chain 4000 chr2 243199373 + 176211236 176211302 MER5A1 166 - 59 150 207391 24 8 33 34 chain 88203 chr2 243199373 + 176252368 176253432 MER11C 1089 + 0 1074 40298 135 1 0 115 0 1 66 0 4 369 0 4 43 0 1 325 1 2 9 chain 78794 chr2 243199373 + 176275921 176276806 L1PA4 6152 - 1 885 44150 325 9 8 551 chain 29228 chr2 243199373 + 176298032 176298347 AluYb8 318 - 5 318 87922 187 2 0 126 chain 32709 chr2 243199373 + 176315682 176316100 LOR1b 457 + 40 457 79672 15 9 11 77 3 0 314 chain 27247 chr2 243199373 + 176324326 176324678 THE1A 353 + 0 353 95439 64 0 2 43 12 11 233 chain 126162 chr2 243199373 + 176324678 176326247 THE1A-int 1579 + 0 1573 29050 506 0 5 1049 1 0 13 chain 27024 chr2 243199373 + 176326252 176326591 THE1A 353 + 0 341 96207 110 1 0 96 1 4 131 chain 26026 chr2 243199373 + 176330608 176330978 THE1C 375 - 0 375 99917 25 1 0 173 0 1 36 28 33 107 chain 4057 chr2 243199373 + 176343960 176344022 MER5B 177 - 112 175 206520 20 4 5 38 chain 566006 chr2 243199373 + 176346693 176352722 L1HS 6032 - 0 6030 152 5959 0 1 70 chain 6223 chr2 243199373 + 176357066 176357345 MSTB1 431 - 120 404 183382 29 107 118 25 53 45 30 9 11 26 chain 123943 chr2 243199373 + 176358450 176360144 L1PA8 5853 - 5 1702 29718 79 18 17 11 2 1 30 1 2 19 1 0 9 2 1 70 3 1 36 19 18 108 5 0 6 10 15 416 2 0 131 0 10 505 0 1 211 chain 92517 chr2 243199373 + 176369307 176370380 L1PA5 6144 + 5064 6138 38811 741 0 1 185 7 0 8 0 7 132 chain 331542 chr2 243199373 + 176370387 176374313 L1PA6 6164 + 2187 6162 12145 146 0 1 114 1 10 738 0 1 815 0 2 221 1 0 312 3 33 64 1 0 37 1 0 637 0 4 6 0 1 497 0 1 180 1 2 142 0 2 9 chain 104652 chr2 243199373 + 176382961 176385395 L1PA11 4918 - 592 1938 35577 45 0 1 94 1094 0 364 8 6 5 0 2 101 13 12 30 1 0 148 0 6 162 0 1 369 chain 63939 chr2 243199373 + 176383118 176384161 L1PB1 5432 + 4498 5427 51036 129 1 0 5 14 0 192 0 3 106 4 0 146 0 4 8 0 1 11 27 0 11 42 0 24 1 0 9 1 0 11 15 9 52 1 0 18 1 0 44 1 0 15 3 0 6 16 6 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 10066 chr2 243199373 + 176393852 176394002 MER2 342 - 51 203 160239 88 9 11 53 chain 29456 chr2 243199373 + 176413100 176413414 AluYb8 318 + 0 312 86820 18 2 0 294 chain 39259 chr2 243199373 + 176452794 176453240 L1PA4 6152 - 6 452 70380 446 chain 549853 chr2 243199373 + 176453274 176459291 L1PA2 6032 - 0 6026 1465 7 3 0 1746 0 1 3256 0 2 71 0 16 220 7 0 457 1 0 182 1 2 66 chain 22532 chr2 243199373 + 176459687 176459980 AluSg4 309 + 4 297 117886 128 2 0 131 8 10 24 chain 15710 chr2 243199373 + 176462839 176463122 L1PA16 3655 - 1303 1596 139235 23 0 5 10 3 2 106 13 17 11 17 18 11 8 9 81 chain 25044 chr2 243199373 + 176467408 176467692 L1PA7 6471 - 1450 1734 104113 284 chain 123070 chr2 243199373 + 176467692 176469131 L1PA7 6471 + 5022 6469 30020 599 0 3 86 1 0 113 0 3 482 1 2 146 0 2 11 chain 31392 chr2 243199373 + 176480111 176480541 MSTA 426 + 0 408 81829 203 10 6 40 18 0 159 chain 3491 chr2 243199373 + 176490850 176490891 MIRb 242 + 89 130 215496 41 chain 74591 chr2 243199373 + 176513423 176514527 L1PREC2 3366 + 139 1237 46215 25 46 38 7 1 0 5 0 2 7 2 0 9 1 0 15 1 0 10 2 0 32 1 0 112 1 0 67 1 0 177 7 17 85 3 2 71 0 1 296 8 10 4 1 0 87 5 4 15 chain 268174 chr2 243199373 + 176514558 176518735 L1PB1 5432 + 1591 5326 15278 231 10 6 6 0 1 404 0 1 5 2 0 6 4 5 177 0 1 4 1 0 58 10 12 283 1 0 18 1 0 9 2 0 5 4 6 25 1 2 8 0 1 64 0 4 97 2 1 183 311 0 85 1 2 203 0 1 88 65 13 4 0 1 121 1 0 78 0 9 11 0 1 539 38 11 247 0 1 4 6 7 96 46 3 22 2 33 119 1 0 5 0 1 45 0 1 96 1 10 32 21 0 14 52 0 21 1 0 4 1 0 14 2 0 3 2 0 9 2 0 52 7 36 25 2 0 6 0 7 7 26 7 18 chain 4220 chr2 243199373 + 176520216 176520594 L1PREC2 3366 + 2979 3249 204300 30 9 7 20 247 160 19 10 5 21 14 0 8 chain 526072 chr2 243199373 + 176532753 176539525 L1PA7 6471 + 0 6465 4580 406 5 6 111 0 1 135 1 0 39 1 2 90 1 10 689 1 2 49 0 1 18 1 2 602 0 1 355 0 2 34 0 2 84 1 0 50 0 1 459 330 0 325 5 7 40 1 0 26 0 4 28 2 1 421 1 0 257 0 1 59 0 1 531 0 1 761 0 3 12 4 0 507 11 12 172 0 1 138 3 0 6 chain 291553 chr2 243199373 + 176556193 176559365 L1HS 6032 - 2229 5401 13927 3172 chain 400510 chr2 243199373 + 176565116 176569606 L1PA2 6032 - 0 6032 10079 13 0 1 67 1 0 1519 1 356 1021 1 0 76 74 1257 734 1 2 730 1 0 91 4 9 156 chain 520199 chr2 243199373 + 176573548 176580001 L1PA7 6471 + 3 6465 5136 224 19 0 9 1 16 158 0 2 391 0 10 768 0 1 186 1 0 267 0 1 123 5 1 4 0 1 96 1 0 139 0 4 232 9 6 226 5 6 334 3 4 6 0 1 771 1 3 237 1 2 4 1 0 206 0 1 30 0 1 8 0 1 85 7 6 5 0 1 710 0 1 332 6 7 277 4 1 387 29 28 135 3 0 7 chain 483851 chr2 243199373 + 176581932 176587451 L1PA4 6152 + 621 6152 7593 433 0 1 5 2 1 295 0 1 358 0 1 99 0 2 2539 0 4 940 0 1 597 2 0 110 2 1 29 0 1 102 0 5 6 chain 20994 chr2 243199373 + 176603895 176604125 L1PA5 6144 + 5901 6131 123939 230 chain 11623 chr2 243199373 + 176623486 176623752 L1PB1 5432 - 5 246 153799 4 1 0 5 1 0 14 1 0 12 1 0 22 1 0 25 2 0 10 54 39 16 1 0 44 18 16 34 chain 541179 chr2 243199373 + 176624329 176630343 L1PA3long 6157 + 4 6146 2637 66 1 2 81 0 1 587 0 1 25 11 139 1944 2 0 1410 1 0 4 0 1 1823 2 0 52 0 1 5 chain 29621 chr2 243199373 + 176637498 176637816 AluYb9 318 - 3 318 86146 197 3 0 118 chain 30014 chr2 243199373 + 176648860 176649175 AluYb8 318 + 1 316 84759 315 chain 30174 chr2 243199373 + 176649896 176650214 AluYb8 318 - 0 318 84259 318 chain 21528 chr2 243199373 + 176660989 176661332 THE1B 368 + 0 368 122052 44 8 23 14 0 1 90 2 1 25 41 51 119 chain 114973 chr2 243199373 + 176661332 176662853 THE1B-int 1605 + 0 1598 32803 12 3 5 398 10 36 28 4 3 27 1 0 235 4 13 118 6 20 26 1 28 20 6 7 622 chain 21780 chr2 243199373 + 176662861 176663201 THE1B 368 + 1 366 121100 43 0 6 6 0 9 62 6 7 38 1 0 26 0 3 5 30 37 123 chain 3886 chr2 243199373 + 176663409 176663454 MLT1G 592 + 488 533 209081 45 chain 22177 chr2 243199373 + 176705544 176705901 THE1B 368 - 0 366 119462 49 5 13 18 2 1 113 26 25 101 10 15 20 2 0 11 chain 53377 chr2 243199373 + 176713127 176713797 L1PA8 5853 + 5189 5853 56783 331 0 1 43 1 0 46 2 0 69 1 0 9 1 0 51 4 3 18 1 0 93 chain 4900 chr2 243199373 + 176714178 176714252 MADE1 96 - 0 95 196266 28 8 29 38 chain 34485 chr2 243199373 + 176722080 176722526 LTR12F 595 + 0 595 76934 103 11 160 99 0 1 169 2 1 62 chain 32153 chr2 243199373 + 176723769 176724309 L1PB1 5432 - 12 531 80607 16 1 0 12 2 1 21 8 5 21 2 0 12 1 0 4 3 1 19 2 3 9 2 0 15 1 0 45 18 16 53 2 0 9 5 1 10 1 0 9 1 0 24 1 0 11 1 0 106 3 6 90 chain 4254 chr2 243199373 + 176751743 176751793 L1PB4 2604 + 2492 2542 203828 50 chain 315623 chr2 243199373 + 176757388 176761237 L1PA7 6471 + 2629 6457 12781 65 0 1 194 0 4 251 0 1 183 3 4 248 1 0 252 3 0 301 0 2 687 0 1 143 5 6 89 2 0 135 6 7 407 0 1 10 1 0 12 0 1 90 31 5 560 40 38 130 chain 36059 chr2 243199373 + 176771608 176772170 MER1A 529 - 0 529 74822 64 19 22 220 9 10 168 68 31 14 chain 212938 chr2 243199373 + 176776867 176779485 L1P3 4156 - 1529 4153 18299 208 1 4 91 1 0 113 0 1 183 0 1 276 1 0 92 0 3 451 0 2 728 6 8 65 2 0 81 1 0 59 25 24 234 chain 52911 chr2 243199373 + 176815977 176816822 L1PB1 5432 - 16 817 57075 12 1 0 13 1 0 45 2 0 14 7 5 14 28 17 16 1 0 43 1 0 16 2 1 53 2 0 9 4 0 7 5 4 13 1 0 20 31 11 20 12 13 148 0 1 10 1 0 95 5 4 107 0 2 80 0 2 6 chain 478143 chr2 243199373 + 176822318 176828438 L1PA3long 6157 + 8 6156 7796 107 0 1 4 9 22 76 1 0 207 6 5 148 0 1 24 1 0 102 7 14 66 39 56 124 25 0 213 94 85 161 0 5 376 6 8 37 0 4 352 0 2 118 3 1 206 0 3 635 1 0 43 0 1 284 0 4 190 0 4 2307 4 6 139 0 2 5 chain 14300 chr2 243199373 + 176850343 176850554 MER44A 345 - 26 234 143564 88 15 10 70 0 2 38 chain 48238 chr2 243199373 + 176851862 176852407 L1PA4 6152 + 5602 6152 60284 539 0 5 6 chain 20335 chr2 243199373 + 176907693 176908037 THE1B 368 + 0 356 126119 13 2 0 27 6 11 121 5 4 22 45 55 103 chain 10449 chr2 243199373 + 176913558 176913710 THE1D 372 + 0 162 158494 52 13 23 87 chain 28214 chr2 243199373 + 177073040 177073350 AluYf4 310 + 0 310 92257 310 chain 459699 chr2 243199373 + 177082888 177088404 L1PA6 6164 - 5 6164 8411 177 1 0 522 0 3 271 0 1 558 22 7 200 0 1 14 0 7 428 6 2 444 0 1 331 0 2 11 7 8 458 99 0 90 0 8 600 2 1 28 0 2 30 1 0 409 2 5 711 4 739 90 chain 3696 chr2 243199373 + 177092084 177092143 L1MB3 1562 - 7 65 211988 28 6 5 25 chain 511111 chr2 243199373 + 177170651 177176739 L1PA6 6164 - 7 6140 6059 142 1 0 93 0 3 212 0 2 307 1 0 82 0 4 657 0 5 280 0 2 89 0 3 496 3 0 156 0 11 423 0 1 855 11 0 319 2 1 221 0 3 80 0 4 158 0 2 473 1 3 255 0 17 231 1 0 41 6 8 278 0 2 214 chain 89597 chr2 243199373 + 177217421 177218507 MER11B 1079 - 0 1079 39782 24 1 2 281 6 0 177 1 0 196 0 2 138 10 7 252 chain 6617 chr2 243199373 + 177218508 177218584 L1PB1 5432 - 933 1009 180321 76 chain 32096 chr2 243199373 + 177233168 177233692 MER1A 529 + 0 525 80698 14 71 81 287 4 5 60 0 1 11 15 0 6 2 6 54 chain 3791 chr2 243199373 + 177234509 177234578 MER121 330 + 130 197 210515 42 13 11 14 chain 31481 chr2 243199373 + 177238689 177239237 L1MA3 4352 + 3740 4260 81674 30 0 5 125 1 2 12 9 1 40 0 5 133 63 42 69 20 14 18 4 0 24 chain 56948 chr2 243199373 + 177282650 177283321 L1PA7 6471 - 6 676 54562 143 0 7 7 7 0 176 0 1 125 2 0 211 chain 23118 chr2 243199373 + 177283321 177283594 L1PA7 6471 + 5510 5785 115049 86 0 1 173 1 2 13 chain 23080 chr2 243199373 + 177293712 177294063 THE1D 372 + 0 372 115245 61 0 4 7 1 7 55 0 2 30 24 27 28 7 13 138 chain 29932 chr2 243199373 + 177295438 177295752 AluYb8 318 + 0 314 85013 314 chain 4107 chr2 243199373 + 177324467 177324513 MADE1 96 + 50 96 205816 46 chain 137380 chr2 243199373 + 177351158 177352782 L1PA7 6471 - 8 1639 26578 718 0 1 60 5 8 55 1 0 18 0 4 615 1 0 36 0 1 115 chain 16531 chr2 243199373 + 177378375 177378611 Tigger3b 1229 - 711 956 136833 111 0 3 20 0 4 42 16 18 47 chain 40453 chr2 243199373 + 177442877 177443340 L1PA5 6144 - 0 464 68660 159 0 1 304 chain 136545 chr2 243199373 + 177487774 177489405 L1PA7 6471 - 1251 2872 26735 271 1 0 462 26 0 430 0 12 24 7 9 11 0 1 12 0 1 157 0 1 230 chain 104425 chr2 243199373 + 177489405 177490624 L1PA7 6471 + 5239 6461 35569 19 0 1 363 2 0 163 0 2 20 0 2 652 chain 29345 chr2 243199373 + 177498132 177498442 AluYa5 310 - 0 310 87318 310 chain 19571 chr2 243199373 + 177507152 177507364 AluYa5 310 + 91 301 128459 32 2 0 178 chain 27696 chr2 243199373 + 177572432 177572748 L1PA4 6152 - 0 313 94057 6 3 0 307 chain 23141 chr2 243199373 + 177636691 177637045 THE1B 368 + 0 368 114932 13 2 0 27 0 5 62 2 3 62 3 1 27 1 0 4 5 10 10 11 19 125 chain 544307 chr2 243199373 + 177661150 177667152 L1PA3long 6157 + 2 6157 2170 151 0 1 286 0 1 335 0 128 821 0 1 596 0 4 1093 0 13 1516 0 1 361 0 4 843 chain 3826 chr2 243199373 + 177675511 177675556 MIRc 230 - 115 160 209978 45 chain 34223 chr2 243199373 + 177675679 177676058 L1PA7 6471 + 6088 6467 77320 379 chain 24470 chr2 243199373 + 177681170 177681464 L1PA7 6471 + 6169 6462 107705 145 1 0 148 chain 5375 chr2 243199373 + 177723148 177723225 MADE1 96 + 0 95 191244 42 1 17 9 0 2 25 chain 65673 chr2 243199373 + 177746542 177747314 L1PA6 6164 + 5391 6162 50255 414 2 1 356 chain 9200 chr2 243199373 + 177774211 177774347 L1PA8 5853 + 5713 5847 164552 27 2 1 15 8 7 84 chain 30135 chr2 243199373 + 177776768 177777105 L1PA4 6152 - 0 337 84364 337 chain 70185 chr2 243199373 + 177787000 177787811 L1PA6 6164 + 5355 6162 48315 801 4 0 6 chain 3755 chr2 243199373 + 177791297 177791415 L1MB7 1623 - 91 189 211045 12 6 3 18 1 0 4 10 6 11 1 0 26 4 1 9 8 0 8 chain 5459 chr2 243199373 + 177806955 177807023 MER3 215 - 95 163 190421 68 chain 10621 chr2 243199373 + 177813221 177813446 MER39 703 + 332 607 157726 36 6 28 28 68 94 9 0 2 78 chain 107256 chr2 243199373 + 177815792 177816966 L1PA3long 6157 + 4976 6150 34896 1174 chain 21727 chr2 243199373 + 177831657 177831972 AluY 311 + 0 295 121290 44 39 23 65 0 1 149 5 0 13 chain 31737 chr2 243199373 + 177859039 177859407 L1PA6 6164 + 5794 6162 81263 368 chain 102270 chr2 243199373 + 177872394 177873830 LTR12C 1709 + 0 1708 36201 58 25 26 105 12 8 103 1 2 162 4 5 181 0 119 68 1 0 116 10 167 87 24 0 8 20 13 72 4 5 34 0 29 259 6 5 76 chain 50105 chr2 243199373 + 177899274 177899829 L1PA4 6152 - 16 574 58941 133 0 3 422 chain 29459 chr2 243199373 + 177919838 177920155 AluYb8 318 + 0 317 86802 317 chain 4711 chr2 243199373 + 177934645 177934727 MIR 256 - 59 144 198382 13 6 10 28 2 0 28 0 1 5 chain 4895 chr2 243199373 + 177994942 177995001 MER5A1 166 + 101 160 196321 59 chain 8059 chr2 243199373 + 178002124 178002228 MER30 238 - 1 102 170703 37 4 1 63 chain 6297 chr2 243199373 + 178019233 178019306 MER41A 554 + 395 468 182829 73 chain 23141 chr2 243199373 + 178050852 178051188 THE1B 368 - 0 368 114934 117 38 53 21 1 0 110 0 3 5 0 15 44 chain 6591 chr2 243199373 + 178059710 178059792 HY1 111 + 0 82 180530 82 chain 23666 chr2 243199373 + 178133416 178133697 AluSp 311 + 0 288 112223 34 0 7 247 chain 24999 chr2 243199373 + 178145631 178145938 AluSc5 308 - 3 307 104797 39 12 9 256 chain 20189 chr2 243199373 + 178166185 178166458 L1M1 2793 - 934 1206 126561 124 0 2 69 4 1 76 chain 4019 chr2 243199373 + 178179618 178179677 MER5A1 166 + 8 80 207096 7 0 14 14 1 0 37 chain 12290 chr2 243199373 + 178193234 178193372 L1PA5 6144 + 5997 6135 151041 138 chain 2648 chr2 243199373 + 178205300 178205365 MER33 330 + 110 174 231026 28 21 20 16 chain 8546 chr2 243199373 + 178210586 178210690 U13 108 - 4 108 168037 104 chain 94288 chr2 243199373 + 178218214 178219927 L1PB1 5432 - 14 1313 38267 14 1 0 13 1 0 21 1 0 24 2 0 10 12 9 16 8 0 15 3 0 7 1 0 8 1 0 44 1 0 16 2 1 47 6 4 11 6 2 9 1 0 13 1 0 20 395 3 5 0 3 92 6 7 223 0 6 154 2 0 232 0 1 269 chain 9257 chr2 243199373 + 178224855 178224982 MER85 139 - 0 134 164281 29 7 14 91 chain 470719 chr2 243199373 + 178232617 178238666 L1PA8 5853 - 0 5745 8011 93 1 0 16 1 0 38 6 7 6 1 0 14 1 0 71 2 0 46 2 1 187 0 1 146 1 2 32 319 0 116 6 7 61 0 2 758 14 1 134 0 11 230 0 1 938 0 5 52 2 1 387 1 5 225 0 1 99 16 16 672 1 2 97 0 3 383 0 3 528 0 7 9 7 0 130 0 4 63 9 6 128 chain 153007 chr2 243199373 + 178274608 178276467 HERV17-int 4347 - 0 3536 24230 220 0 1 391 0 1672 197 1 0 347 0 1 46 8 9 47 1 0 67 34 36 275 0 2 225 chain 40522 chr2 243199373 + 178277376 178277886 LTR17 781 - 0 526 68561 46 0 1 15 2 24 279 6 0 89 2 1 71 chain 17130 chr2 243199373 + 178281979 178282200 Tigger4b 360 + 139 359 135232 62 0 1 102 4 2 53 chain 278228 chr2 243199373 + 178290553 178294498 L1PA10 4194 - 33 4007 14741 11 1 0 34 3 0 560 0 1 72 31 30 49 1 3 136 4 28 113 4 1 75 0 8 99 0 4 97 1 0 106 9 13 38 9 14 38 2 3 80 1 5 84 1 0 114 0 7 17 0 6 52 0 1 32 0 4 76 1 3 106 0 2 363 0 3 87 4 7 221 1 5 249 0 3 169 1 0 70 8 16 362 2 0 38 6 5 35 1 0 10 7 1 15 1 0 9 27 24 12 2 0 5 61 36 10 1 0 13 3 1 20 52 43 7 3 0 13 chain 78174 chr2 243199373 + 178295774 178296777 MER11A 1151 - 0 1151 44427 36 0 4 26 1 0 68 1 0 22 0 1 101 1 33 225 1 0 223 0 1 20 0 1 85 0 11 63 1 5 27 2 0 21 0 99 79 chain 12118 chr2 243199373 + 178319659 178319839 MER30B 195 + 5 195 151749 33 6 16 37 0 3 62 7 4 35 chain 297543 chr2 243199373 + 178321478 178325054 L1PA7 6471 + 2865 6468 13550 547 0 4 106 0 1 21 0 4 14 0 1 329 2 0 183 4 0 545 2 10 35 0 8 517 1 5 9 1 0 7 0 1 402 0 3 225 14 17 600 3 0 9 chain 46635 chr2 243199373 + 178344919 178345458 L1PA5 6144 + 5598 6137 61509 293 1 0 95 1 3 9 1 0 139 chain 43024 chr2 243199373 + 178384460 178385016 MER41A 554 - 0 541 65394 20 5 0 285 6 0 185 5 1 50 chain 9849 chr2 243199373 + 178423468 178423611 MSTB2-int 240 + 83 230 161349 34 2 1 29 1 6 77 chain 8927 chr2 243199373 + 178426636 178426747 THE1C 375 + 264 375 165998 111 chain 74560 chr2 243199373 + 178458682 178459663 LTR13 1007 - 0 1007 46232 31 3 1 163 1 0 107 11 19 57 2 1 112 0 23 103 8 9 142 0 1 4 1 0 161 2 0 73 chain 8403 chr2 243199373 + 178464923 178465033 MER67C 710 - 310 421 168837 35 2 3 73 chain 26093 chr2 243199373 + 178507451 178507837 THE1B 368 + 0 357 99653 59 35 11 98 1 0 24 2 0 108 2 0 57 chain 120892 chr2 243199373 + 178507848 178509427 THE1B-int 1605 + 0 1605 30730 25 3 0 5 15 18 368 15 51 261 0 1 270 0 1 9 1 2 245 21 8 341 chain 46946 chr2 243199373 + 178546338 178547101 MER4D1 891 + 0 797 61262 30 27 28 89 1 0 90 0 28 145 1 0 20 1 0 47 52 55 65 4 11 54 4 0 9 37 39 87 chain 23822 chr2 243199373 + 178556410 178556831 LTR23 429 + 0 429 111351 14 2 1 20 6 23 35 17 11 102 4 1 48 28 29 30 2 0 6 4 6 103 chain 21503 chr2 243199373 + 178594814 178595061 L1PA5 6144 - 8 255 122135 247 chain 23539 chr2 243199373 + 178622743 178623050 AluY 311 + 9 308 112908 11 9 1 102 0 3 7 3 0 175 chain 2046 chr2 243199373 + 178641310 178641429 MLT1B 390 + 61 173 151971 64 17 10 38 chain 24821 chr2 243199373 + 178641540 178641887 THE1C 375 + 0 355 105767 108 2 0 34 1 5 64 2 3 10 4 7 12 0 1 6 0 2 98 1 0 5 chain 1548 chr2 243199373 + 178641921 178642011 MLT1B 390 + 294 381 151971 66 3 0 21 chain 558676 chr2 243199373 + 178650131 178656264 L1PA3long 6157 + 6 6146 434 862 0 1 1454 1 2 1369 0 1 975 0 1 691 0 3 781 chain 21913 chr2 243199373 + 178673575 178673979 L1MB3 1562 + 1175 1553 120574 22 8 7 49 1 0 59 7 10 30 1 0 47 0 2 15 49 22 82 5 4 29 chain 10757 chr2 243199373 + 178701053 178701210 LTR12C 1709 + 837 1037 157172 72 3 5 63 1 42 18 chain 134044 chr2 243199373 + 178709270 178710746 SVA_F 1814 - 8 1814 27195 8 0 1 583 0 289 57 0 40 828 chain 170651 chr2 243199373 + 178714161 178716264 L1PA5 6144 + 4230 6135 21972 174 199 0 51 0 1 1516 1 2 57 1 0 104 chain 37374 chr2 243199373 + 178722723 178723135 L1PA5 6144 + 4881 5294 72997 89 0 1 323 chain 74648 chr2 243199373 + 178723135 178723978 L1PA5 6144 + 5296 6144 46187 735 1 0 86 0 6 21 chain 7594 chr2 243199373 + 178742191 178742280 LTR48 738 - 348 438 173588 49 0 1 40 chain 14710 chr2 243199373 + 178759176 178759450 MER49 923 + 0 283 142240 23 4 12 67 63 64 117 chain 5390 chr2 243199373 + 178760361 178760459 L1MA7 2200 + 1880 1977 191083 52 11 12 5 2 0 28 chain 24723 chr2 243199373 + 178766789 178767167 LTR7B 505 + 0 494 106307 105 0 10 56 13 81 37 2 1 21 1 42 88 14 13 20 7 6 14 chain 9712 chr2 243199373 + 178787065 178787173 L1PA4 6152 + 6043 6151 162022 108 chain 83170 chr2 243199373 + 178789455 178790356 L1PA2 6032 - 0 902 42262 781 0 1 120 chain 26009 chr2 243199373 + 178792558 178792853 AluSp 311 + 9 304 99977 295 chain 24915 chr2 243199373 + 178797817 178798125 L1PA16 3655 + 2006 2314 105246 308 chain 163524 chr2 243199373 + 178809585 178812511 SVA_F 1814 + 10 1812 22872 635 0 1 243 501 0 58 0 15 39 507 0 10 1 0 159 1 0 28 130 0 614 chain 19909 chr2 243199373 + 178810504 178810964 SVA_F 1814 + 931 1129 88189 16 55 20 79 227 0 83 chain 3225 chr2 243199373 + 178810540 178810575 SVA_F 1814 + 1108 1143 143288 35 chain 3870 chr2 243199373 + 178810654 178810696 SVA_F 1814 + 1222 1264 143288 42 chain 5433 chr2 243199373 + 178810729 178810820 SVA_F 1814 + 1122 1212 147276 10 1 0 80 chain 1449 chr2 243199373 + 178810834 178810866 SVA_F 1814 + 886 918 191088 32 chain 4544 chr2 243199373 + 178811073 178811178 SVA_F 1814 + 1187 1291 88189 87 1 0 17 chain 15927 chr2 243199373 + 178811178 178811357 SVA_F 1814 + 1116 1291 99022 43 1 0 11 1 0 17 1 0 87 1 0 17 chain 10844 chr2 243199373 + 178811374 178811499 SVA_F 1814 + 893 1031 156810 44 1 0 10 0 15 39 1 0 30 chain 1049 chr2 243199373 + 178811537 178811567 SVA_F 1814 + 1098 1128 153137 30 chain 6571 chr2 243199373 + 178811767 178811834 SVA_F 1814 + 1022 1089 167036 67 chain 2182 chr2 243199373 + 178811834 178811856 SVA_F 1814 + 1138 1160 236830 22 chain 3393 chr2 243199373 + 178811860 178811897 SVA_F 1814 + 1160 1197 217241 37 chain 22656 chr2 243199373 + 178815371 178815673 AluYk4 311 + 15 296 117299 232 22 1 48 chain 10091 chr2 243199373 + 178816649 178816761 L1PA6 6164 - 13 125 160129 112 chain 131422 chr2 243199373 + 178820341 178821788 L1PA4 6152 + 4694 6151 27770 417 0 1 889 0 8 29 0 1 112 chain 62238 chr2 243199373 + 178833382 178834159 L1PA8 5853 + 5074 5853 51783 23 9 16 451 1 0 46 2 0 130 2 1 19 1 0 93 chain 566625 chr2 243199373 + 178837800 178843817 L1HS 6032 + 0 6032 114 4275 0 2 413 0 14 1176 1 0 152 chain 452862 chr2 243199373 + 178897265 178902764 L1PA8 5853 + 326 5853 8660 319 0 6 96 5 2 808 2 0 45 0 5 72 0 1 286 8 9 48 1 0 69 0 22 374 4 5 389 2 0 218 0 1 280 3 1 69 1 2 195 0 1 13 0 2 34 0 1 434 0 1 47 0 1 62 5 6 90 1 0 173 9 10 487 14 12 60 1 3 479 8 7 39 2 0 69 1 0 9 1 0 51 1 0 21 1 0 93 chain 6302 chr2 243199373 + 178903639 178903731 U6 107 + 11 107 182774 23 6 10 63 chain 529168 chr2 243199373 + 178914098 178920235 L1PA5 6144 + 0 6144 4280 550 1 2 617 9 0 38 0 1 500 0 1 597 6 0 1612 0 1 361 0 2 187 9 10 53 6 7 169 12 24 87 0 1 472 3 0 5 7 11 309 1 2 370 1 0 155 chain 31071 chr2 243199373 + 178961202 178961589 THE1D-int 1627 - 1093 1564 82393 56 0 81 290 0 3 41 chain 11792 chr2 243199373 + 178967918 178968080 L1MB5 1630 + 1300 1467 153075 92 1 0 19 3 9 47 chain 6557 chr2 243199373 + 178978812 178978889 MER58C 217 - 6 83 180803 77 chain 5465 chr2 243199373 + 179007272 179007334 U5 65 + 0 62 190353 62 chain 123616 chr2 243199373 + 179018710 179020289 THE1B-int 1605 - 5 1605 29836 136 4 0 288 28 29 628 1 0 63 1 26 430 chain 11893 chr2 243199373 + 179027434 179027567 L1PA3long 6157 + 6005 6138 152636 133 chain 23495 chr2 243199373 + 179034323 179034615 AluY 311 + 0 290 113146 13 1 0 54 2 0 65 0 1 6 7 4 7 0 3 137 chain 52808 chr2 243199373 + 179045228 179045867 L1PA7 6471 - 2 634 57128 8 7 0 624 chain 4493 chr2 243199373 + 179071902 179071992 MLT1D 503 - 21 229 200865 50 23 141 17 chain 3275 chr2 243199373 + 179093522 179093576 Charlie5 601 - 155 207 219464 11 1 0 7 2 0 8 0 1 25 chain 5895 chr2 243199373 + 179094224 179094689 MER5A 189 + 26 188 186231 45 378 75 42 chain 8231 chr2 243199373 + 179119601 179119694 THE1B 368 - 32 125 169772 93 chain 8018 chr2 243199373 + 179162922 179163139 L1MB3 1562 - 278 503 170941 58 23 16 6 0 3 24 60 73 10 2 1 34 chain 7826 chr2 243199373 + 179191700 179191876 L1PB1 5432 + 5268 5422 172150 16 3 0 9 26 15 18 12 9 11 2 0 24 1 0 22 1 0 12 1 0 18 chain 517662 chr2 243199373 + 179216844 179222965 L1PA6 6164 + 0 6161 5405 567 1 0 220 0 17 46 8 10 662 28 29 38 0 3 261 0 5 51 0 2 647 0 1 217 0 1 274 0 1 9 4 3 379 0 1 1527 0 1 332 7 12 655 0 2 188 chain 46448 chr2 243199373 + 179249019 179249661 MER4A 717 - 10 638 61639 207 12 11 24 0 5 196 4 0 127 28 14 44 chain 21059 chr2 243199373 + 179249694 179249961 L1PA7 6471 + 6192 6459 123694 115 0 7 7 12 5 133 chain 16984 chr2 243199373 + 179272121 179272355 MER30 238 + 0 238 135635 80 1 0 28 2 10 71 3 0 49 chain 26225 chr2 243199373 + 179311465 179311744 AluYa5 310 + 27 306 99112 279 chain 41301 chr2 243199373 + 179327137 179327668 LTR17 781 + 255 781 67531 20 7 10 23 10 0 19 0 1 386 3 0 5 0 3 51 0 1 7 chain 25664 chr2 243199373 + 179327951 179328271 LTR17 781 + 5 326 101433 114 0 9 151 0 2 18 10 0 27 chain 9104 chr2 243199373 + 179341322 179341438 L1MB2 1706 - 214 330 165050 116 chain 13844 chr2 243199373 + 179357196 179357352 L1PA3long 6157 + 5994 6150 145087 156 chain 2621 chr2 243199373 + 179382145 179382257 MER5A1 166 + 55 165 231419 23 70 68 19 chain 7299 chr2 243199373 + 179386378 179386524 MER44A 345 + 78 237 175454 20 16 22 37 5 21 26 9 0 33 chain 88566 chr2 243199373 + 179389596 179390602 L1PA3long 6157 - 0 1010 40162 849 0 1 4 8 11 145 chain 65824 chr2 243199373 + 179450185 179450950 L1PA7 6471 - 14 781 50178 109 0 1 144 0 4 97 3 0 412 chain 204238 chr2 243199373 + 179519781 179522141 L1PA4 6152 + 3759 6143 18910 734 0 4 228 5 17 84 0 1 349 3 4 118 0 4 736 0 1 57 0 1 46 chain 205667 chr2 243199373 + 179524041 179526402 L1PA4 6152 + 3759 6143 18810 734 0 4 228 5 17 84 0 1 471 0 4 736 0 1 57 0 1 46 chain 5926 chr2 243199373 + 179540930 179541009 MADE1 96 + 0 96 185932 30 0 17 49 chain 29299 chr2 243199373 + 179550840 179551146 AluYa5 310 - 4 310 87580 306 chain 28916 chr2 243199373 + 179564130 179564437 AluYk11 308 - 1 308 89391 307 chain 10326 chr2 243199373 + 179570920 179571062 MER2 342 - 64 211 159005 61 8 13 73 chain 9419 chr2 243199373 + 179633128 179633327 L1MB8 1703 - 131 328 163466 63 9 5 53 14 17 10 27 26 23 chain 22668 chr2 243199373 + 179663829 179664153 LTR1 825 + 13 815 117226 38 5 19 115 1 0 49 0 466 35 0 1 39 8 7 29 1 0 4 chain 14045 chr2 243199373 + 179673939 179674103 MLT2A1 477 + 218 382 144400 164 chain 69872 chr2 243199373 + 179686372 179687146 L1PA5 6144 + 5370 6144 48451 198 0 2 565 2 0 9 chain 3753 chr2 243199373 + 179696133 179696174 U7 62 - 19 60 211084 41 chain 234479 chr2 243199373 + 179765895 179768489 L1PA3long 6157 + 3556 6153 17063 737 0 2 1530 0 1 327 chain 29268 chr2 243199373 + 179787823 179788130 AluYa5 310 - 3 310 87698 307 chain 187537 chr2 243199373 + 179800747 179803444 L1PA14 3548 - 68 2736 20288 15 1 0 10 6 0 40 1 0 17 1 0 5 1 0 8 0 1 6 4 2 33 5 1 10 1 0 66 4 0 68 13 16 45 1 0 6 2 0 13 11 7 104 3 1 6 2 0 47 2 0 10 4 3 249 13 12 116 0 4 508 47 46 21 0 2 33 1 18 122 7 6 98 0 1 12 0 1 23 4 16 343 33 0 206 0 1 290 chain 9085 chr2 243199373 + 179807054 179807372 L1MC1 2226 + 1895 2174 165141 22 10 10 28 42 38 53 1 0 4 106 75 4 1 0 6 1 0 17 1 0 22 chain 23307 chr2 243199373 + 179823761 179824030 L1PA5 6144 + 5875 6142 114165 260 2 0 7 chain 511826 chr2 243199373 + 179830054 179836813 L1PA7 6471 + 0 6468 5996 237 19 29 135 16 14 7 0 1 50 1 0 104 3 0 165 10 15 344 9 6 5 0 3 137 22 41 169 0 1 98 1 0 201 0 1 5 1 0 309 0 13 424 5 7 143 0 2 13 0 1 865 1 5 104 3 4 171 19 0 108 5 4 4 0 1 62 0 1 8 29 6 638 7 11 277 0 1 293 4 5 263 0 2 104 303 0 489 4 0 210 5 6 135 5 1 10 chain 540395 chr2 243199373 + 179847180 179853205 L1PA3long 6157 + 0 6157 2757 153 0 1 210 0 1 403 8 136 2879 0 1 2368 0 1 4 chain 369369 chr2 243199373 + 179874479 179881024 L1PB1 5432 + 402 5387 11110 55 0 3 209 4 5 179 0 1 4 1 0 121 3 4 317 0 3 92 1 0 7 2 0 5 25 11 68 0 1 29 305 0 85 5 10 245 0 3 31 5 1 307 1 4 217 0 4 72 9 1 200 0 5 41 1 0 193 0 4 789 1 4 20 0 1 275 313 0 91 0 1 18 8 13 111 0 1 365 3 0 58 0 1 4 1 0 12 0 2 89 9 0 10 3 11 231 0 1 5 1 0 42 946 20 20 1 0 13 5 4 7 4 0 9 2 0 50 3 2 18 2 1 39 1 0 4 1 0 15 1 0 4 17 8 19 28 23 20 1 0 17 chain 21724 chr2 243199373 + 179878416 179878714 AluY 311 + 4 309 121302 120 9 19 85 15 12 69 chain 118040 chr2 243199373 + 179890358 179891901 THE1B-int 1605 + 0 1599 31791 179 3 4 51 0 1 9 0 28 158 1 26 133 6 7 433 1 0 4 9 10 404 0 1 6 3 2 143 chain 15286 chr2 243199373 + 179892407 179892598 THE1B 368 + 176 368 140522 151 1 2 39 chain 11577 chr2 243199373 + 179906026 179906192 L1PA11 4918 - 407 569 154002 22 4 3 13 2 0 79 2 1 44 chain 123651 chr2 243199373 + 179907375 179909111 L1PA10 4194 + 2364 4161 29829 98 1 0 61 0 4 18 7 6 90 11 10 8 1 0 6 2 0 9 1 0 373 0 1 32 0 19 51 1 8 97 7 27 257 0 15 55 1 12 18 9 13 27 23 13 424 4 1 44 chain 65882 chr2 243199373 + 179909743 179910486 L1PA3long 6157 - 0 746 50149 10 1 4 141 1 0 317 0 1 273 chain 6351 chr2 243199373 + 179910486 179910556 L1PA3long 6157 + 5321 5391 182368 70 chain 308566 chr2 243199373 + 179917969 179921656 HERVH-int 3825 - 0 3825 13063 736 0 3 425 0 3 112 0 1 310 1 0 22 0 2 67 0 4 429 0 2 18 0 5 597 2 0 308 0 3 13 36 1 15 0 38 12 2 1 45 0 38 11 46 133 28 1 0 70 3 0 40 1 0 27 4 0 306 chain 45174 chr2 243199373 + 179922424 179923056 MER51C 639 - 0 639 62847 19 1 3 101 1 5 40 9 13 156 1 6 30 6 7 216 9 0 43 chain 38476 chr2 243199373 + 179925379 179925890 LTR7B 505 - 11 505 71477 245 59 41 173 0 1 34 chain 549328 chr2 243199373 + 179925911 179932045 L1PA3long 6157 - 0 6151 1534 1803 0 4 426 0 1 25 0 2 381 0 1 330 0 1 429 0 1 978 1 0 621 1 7 405 0 1 51 0 1 683 chain 427251 chr2 243199373 + 179940333 179946235 L1PA7 6471 + 3 6466 9365 246 13 14 148 2 0 1347 0 10 230 0 1 175 1 0 169 0 11 13 8 4 267 312 3 756 310 0 168 0 4 40 0 18 528 0 1151 232 0 1 5 1 2 73 1 0 17 18 8 822 chain 29265 chr2 243199373 + 179948334 179948708 THE1C 375 - 0 375 87718 25 1 0 119 0 2 229 chain 539567 chr2 243199373 + 179952114 179958287 L1PA4 6152 - 1 6152 2889 2960 25 10 115 0 1 863 0 2 432 1 0 905 2 1 122 2 0 158 0 1 96 2 1 22 14 8 454 chain 6522 chr2 243199373 + 179961194 179961299 L1MA2 4263 - 3171 3275 181066 45 17 16 43 chain 36315 chr2 243199373 + 179964501 179964898 L1PA3long 6157 - 0 397 74486 397 chain 4558 chr2 243199373 + 179984979 179985031 MSTA 426 + 374 426 200122 52 chain 66839 chr2 243199373 + 180020940 180022364 L1PB2 3958 - 124 1108 49711 59 1 0 20 14 12 62 1 0 64 1 0 62 0 10 29 1 0 64 4 0 13 2 0 61 7 1 14 0 3 28 0 1 22 2 0 365 468 33 55 0 1 5 chain 29522 chr2 243199373 + 180021836 180022206 L1PB2 3958 + 2457 2831 86559 20 0 1 208 0 3 142 chain 21370 chr2 243199373 + 180026145 180026402 AluSc 308 + 38 294 122617 148 1 0 108 chain 529811 chr2 243199373 + 180060671 180066645 L1PA3long 6157 + 0 6142 4211 153 0 1 398 1 0 224 0 128 282 26 25 1181 0 4 48 0 1 817 0 1 754 0 31 306 0 4 1784 chain 19214 chr2 243199373 + 180067766 180068061 MER83B 357 + 0 316 129493 38 15 32 63 13 18 9 2 1 155 chain 507176 chr2 243199373 + 180076754 180082863 L1PA6 6164 + 0 6159 6385 355 0 1 116 3 11 84 1 0 125 0 1 94 0 17 809 0 1 157 12 30 532 5 6 86 16 6 115 0 3 974 1 0 22 0 1 149 2 1 93 1 2 185 0 2 41 0 2 311 1 2 31 1 5 40 0 2 172 1 0 96 1 0 632 0 4 177 0 1 12 0 2 129 16 13 504 2 0 5 chain 18216 chr2 243199373 + 180134192 180134554 THE1D 372 - 0 372 132292 28 7 6 88 6 12 12 66 61 82 4 0 7 5 19 57 chain 10920 chr2 243199373 + 180144691 180144813 AluYb8 318 + 196 318 156528 122 chain 94324 chr2 243199373 + 180145105 180146436 L1MA2 4263 + 176 1530 38253 157 10 8 4 0 1 44 0 20 73 7 3 11 1 2 113 14 4 391 0 12 104 0 1 134 0 1 57 1 2 44 14 15 9 2 0 7 5 7 31 0 1 98 chain 525492 chr2 243199373 + 180179223 180186245 L1PA5 6144 + 0 6130 4628 702 1 0 467 9 0 539 0 1 78 0 1 1465 0 2 131 0 1 817 3 1 224 892 0 864 1 5 129 0 3 700 chain 79536 chr2 243199373 + 180183683 180184545 SVA_E 1901 - 2 941 43809 649 0 78 77 1 0 135 chain 16216 chr2 243199373 + 180190455 180190624 AluYa5 310 + 141 310 137705 169 chain 12335 chr2 243199373 + 180221302 180221618 THE1C 375 - 1 375 150876 25 4 14 37 0 1 48 65 77 18 16 0 9 0 41 18 21 34 25 1 0 14 2 0 13 chain 548717 chr2 243199373 + 180250485 180256617 L1PA3long 6157 + 0 6142 1614 1889 0 4 804 1 0 23 0 1 545 0 2 493 0 2 1155 0 1 99 5 6 1118 chain 24769 chr2 243199373 + 180268118 180268413 L1PA7 6471 + 6171 6466 106065 295 chain 173177 chr2 243199373 + 180314078 180315983 L1PA4 6152 + 4239 6152 21695 1052 0 3 847 0 5 6 chain 25951 chr2 243199373 + 180322861 180323198 THE1B 368 + 0 368 100201 27 0 1 16 0 15 116 1 0 145 0 16 32 chain 126953 chr2 243199373 + 180328080 180329569 L1PA7 6471 - 3 1494 28828 7 4 0 323 0 1 249 0 2 265 1 3 417 0 1 223 chain 4367 chr2 243199373 + 180333845 180333907 MER41B 635 + 482 548 202371 30 5 9 27 chain 29836 chr2 243199373 + 180338263 180338631 L1PA7 6471 - 12 376 85328 191 4 0 173 chain 3974 chr2 243199373 + 180339057 180339108 MADE1 96 + 3 70 207777 43 0 16 8 chain 13598 chr2 243199373 + 180361298 180361493 L1MA1 4479 + 223 414 145981 4 1 0 51 2 0 82 1 0 54 chain 19061 chr2 243199373 + 180368382 180368589 L1PA5 6144 - 176 383 129934 207 chain 70889 chr2 243199373 + 180368602 180369372 L1PA2 6032 - 0 770 47965 770 chain 14771 chr2 243199373 + 180369372 180369535 L1PA4 6152 + 5978 6141 142026 163 chain 13923 chr2 243199373 + 180369552 180369732 MSTA 426 - 246 426 144843 51 1 0 97 0 1 31 chain 130471 chr2 243199373 + 180411151 180412952 L1MA3 4352 - 310 2113 27971 27 0 1 109 0 1 24 16 16 126 13 9 156 0 2 64 31 30 74 16 25 36 0 1 105 0 3 533 3 0 114 5 0 70 5 0 160 0 3 40 1 0 46 0 1 27 chain 23745 chr2 243199373 + 180471947 180472311 THE1D 372 + 0 370 111807 101 8 7 52 54 64 19 3 0 127 chain 467715 chr2 243199373 + 180494280 180500261 L1PA6 6164 + 6 6156 8121 231 0 2 279 0 2 47 1 0 240 5 23 188 2 3 165 0 3 873 1 0 128 1 3 140 29 6 151 13 6 1405 0 1 347 15 511 288 2 1 118 0 5 4 0 1 138 0 1 478 331 0 100 10 10 86 1 3 17 1 0 146 chain 7564 chr2 243199373 + 180543996 180544107 Tigger3c 601 + 487 601 173775 44 8 11 59 chain 6336 chr2 243199373 + 180553437 180553545 L1MA8 2339 - 121 220 182497 20 6 0 29 8 5 45 chain 29971 chr2 243199373 + 180562531 180562860 L1PA5 6144 + 5747 6076 84907 329 chain 4779 chr2 243199373 + 180562860 180562918 L1PA5 6144 + 6086 6144 197581 58 chain 6246 chr2 243199373 + 180566817 180566886 L1PA5 6144 + 6071 6140 183193 69 chain 10332 chr2 243199373 + 180577777 180577910 MER47B 469 + 286 416 158976 6 3 0 124 chain 25260 chr2 243199373 + 180598237 180598529 AluY 311 + 10 302 103413 292 chain 110328 chr2 243199373 + 180599547 180600766 L1PA2 6032 + 4807 6030 34113 1155 8 12 56 chain 532264 chr2 243199373 + 180616664 180622826 L1PA5 6144 - 0 6140 3932 147 0 1 627 0 3 93 2 1 484 4 0 283 0 2 155 0 4 668 0 1 156 0 1 1457 47 0 310 0 1 336 1 6 77 0 11 622 0 1 553 14 0 10 1 15 115 chain 132692 chr2 243199373 + 180646397 180648266 L1PA14 3548 + 1630 3456 27482 22 11 2 133 20 13 159 15 13 10 1 0 329 0 1 177 0 2 198 2 0 249 3 1 14 2 0 47 2 0 5 2 0 35 1 2 69 4 0 20 2 0 6 1 0 84 1 0 111 1 0 11 4 0 36 4 2 12 7 5 17 1 0 41 chain 10276 chr2 243199373 + 180694102 180694233 L1MC2 1988 + 639 770 159248 131 chain 29141 chr2 243199373 + 180701235 180701544 AluYb8 318 - 9 318 88359 309 chain 5467 chr2 243199373 + 180728730 180728811 L1PB1 5432 + 5346 5423 190330 24 1 0 21 1 0 13 1 0 9 1 0 10 chain 82755 chr2 243199373 + 180752950 180754074 MER11A 1151 + 0 1142 42435 79 1 9 142 2 1 51 6 12 22 34 0 72 0 1 54 0 1 111 5 4 123 6 9 12 1 2 38 0 4 115 3 0 5 0 35 96 1 0 87 1 0 57 chain 45239 chr2 243199373 + 180766660 180767281 L1PA8 5853 - 1 590 62782 92 1 0 19 2 1 48 1 0 13 2 1 67 2 0 47 1 0 39 29 4 258 chain 22606 chr2 243199373 + 180783858 180784224 THE1B 368 - 0 368 117565 125 72 74 169 chain 14483 chr2 243199373 + 180785165 180785408 L1PA15 4387 - 31 257 142936 27 8 2 12 3 1 44 6 3 50 1 0 10 4 0 22 1 0 55 chain 24750 chr2 243199373 + 180793335 180793999 THE1A 353 - 0 353 106176 86 1 2 22 319 9 32 1 0 92 2 1 109 chain 125285 chr2 243199373 + 180793999 180795573 THE1A-int 1579 - 0 1579 29302 457 5 9 485 0 1 63 3 9 52 0 1 4 4 3 78 0 1 147 7 0 269 chain 26618 chr2 243199373 + 180795573 180795929 THE1A 353 - 0 353 97604 155 1 0 46 3 2 40 1 0 110 chain 9463 chr2 243199373 + 180802469 180802640 L1PA16 3655 - 995 1150 163263 79 39 23 53 chain 13709 chr2 243199373 + 180823205 180823395 MER30 238 + 30 238 145569 67 0 3 11 5 14 27 0 6 80 chain 31993 chr2 243199373 + 180873099 180873677 MLT2A1 477 + 1 469 80879 141 0 1 20 6 10 151 1 0 61 5 41 9 150 0 34 chain 7248 chr2 243199373 + 180906450 180906601 MER21C 908 + 27 190 175782 17 50 62 84 chain 32527 chr2 243199373 + 180912111 180912581 L1PB 1623 + 1060 1514 79983 231 15 9 146 1 0 6 1 0 32 10 6 11 5 1 12 chain 219781 chr2 243199373 + 180917207 180919854 L1PA7 6471 + 3820 6466 17894 9 0 1 135 0 1 40 0 4 306 0 3 484 0 2 689 12 0 4 0 1 15 1 2 105 0 3 6 0 1 109 0 1 339 6 0 94 0 1 7 5 3 281 chain 3545 chr2 243199373 + 180921244 180921286 LTR14B 630 + 0 42 214633 42 chain 122320 chr2 243199373 + 180923232 180924977 HERV17-int 4347 + 12 3880 30274 15 1 0 50 2 1 35 2 0 18 9 8 107 1 0 19 1 6 47 0 1 15 0 431 18 0 1 23 6 10 74 0 5 15 2 0 63 1 0 28 0 4 30 0 2 79 4 3 16 2 0 8 1 0 19 12 9 51 0 3 47 0 2 78 0 1 20 1 0 102 0 2 81 2 0 68 24 17 43 13 12 74 0 9 153 0 4 68 16 20 33 0 1672 148 chain 51276 chr2 243199373 + 180947148 180948013 L1PA14 3548 - 92 920 58134 9 0 5 27 1 0 19 1 0 3 1 0 14 4 2 33 28 23 9 2 0 84 9 12 79 1 0 6 2 0 17 5 0 56 23 2 51 2 0 7 8 6 39 2 0 14 21 18 233 1 0 11 0 6 43 chain 40764 chr2 243199373 + 181004828 181005616 L1PB2 3958 - 121 1007 68220 53 66 72 33 7 6 55 1 0 39 26 1 31 3 2 5 2 0 63 0 4 22 2 0 13 2 0 63 5 1 5 1 0 8 6 29 25 2 0 35 2 0 6 0 3 75 11 16 24 10 110 87 chain 6226 chr2 243199373 + 181007448 181007523 L1PA5 6144 + 6057 6132 183350 75 chain 26091 chr2 243199373 + 181012904 181013205 AluYk4 311 + 8 300 99659 124 9 0 168 chain 9022 chr2 243199373 + 181025636 181025747 L1PA5 6144 + 6021 6139 165478 41 0 7 70 chain 10282 chr2 243199373 + 181047310 181047505 L1PB3 3668 - 110 288 159224 27 7 5 22 5 7 15 20 4 87 1 0 11 chain 135831 chr2 243199373 + 181057552 181059071 L1PA3long 6157 - 0 1520 26873 1250 0 1 269 chain 11741 chr2 243199373 + 181059071 181059199 L1PA3long 6157 + 4359 4487 153295 128 chain 12411 chr2 243199373 + 181096249 181096392 MLT2A1 477 + 4 147 150597 143 chain 130206 chr2 243199373 + 181097851 181099402 L1PA5 6144 + 4583 6143 28044 325 0 1 4 1 0 231 1 2 150 0 3 23 0 2 486 0 1 171 20 22 139 chain 202635 chr2 243199373 + 181099841 181102918 HERV17-int 4347 + 12 2906 19015 14 6 5 47 1 0 35 2 0 4 1 0 22 1 0 163 14 7 26 17 447 564 6 1 121 7 0 680 592 0 116 0 3 275 0 1 363 chain 50477 chr2 243199373 + 181101578 181102164 LTR14C 587 + 0 587 58659 310 0 1 276 chain 46980 chr2 243199373 + 181117179 181117736 L1PA7 6471 - 17 577 61223 322 1 2 118 0 2 116 chain 20521 chr2 243199373 + 181142348 181142579 L1PA5 6144 - 399 630 125564 231 chain 36966 chr2 243199373 + 181142579 181142991 L1PA5 6144 + 5732 6144 73558 412 chain 21492 chr2 243199373 + 181145665 181145908 L1PA4 6152 - 6 250 122169 107 0 1 136 chain 16158 chr2 243199373 + 181148988 181149192 L1PA15-16 3068 - 2075 2278 137874 90 1 0 113 chain 247063 chr2 243199373 + 181164074 181166806 L1PA3long 6157 - 941 3673 16393 239 0 1 1767 1 0 725 chain 82864 chr2 243199373 + 181166806 181167739 L1PA3long 6157 + 5224 6157 42198 933 chain 42028 chr2 243199373 + 181185102 181185607 MER9a2 513 + 2 513 66587 56 0 1 257 0 5 192 chain 241745 chr2 243199373 + 181202158 181205494 MER61-int 3695 + 1 3345 16684 29 4 0 16 1 0 226 1 0 85 0 4 49 1 2 61 1 0 64 7 6 60 0 20 9 7 5 267 9 16 80 16 7 243 0 1 183 1 0 107 2 0 78 0 5 379 12 18 110 2 1 249 13 3 200 7 8 156 7 6 14 1 0 94 1 0 33 7 6 157 11 13 49 3 0 31 2 1 166 0 1 12 1 2 12 chain 33083 chr2 243199373 + 181228669 181229095 L1PA7 6471 + 6038 6470 79072 219 0 3 29 10 15 155 2 0 11 chain 87471 chr2 243199373 + 181253178 181254593 L1PREC2 3366 - 369 1739 40574 22 41 24 23 10 8 14 13 8 12 31 23 9 3 0 5 1 0 40 4 3 54 2 0 3 1 0 129 6 5 4 0 1 236 88 91 14 0 3 235 10 1 265 4 5 71 3 0 62 chain 65316 chr2 243199373 + 181258276 181259112 L1PA8A 6298 - 7 842 50419 337 0 1 81 8 0 60 0 1 151 4 7 78 0 3 88 6 5 23 chain 15978 chr2 243199373 + 181278624 181278957 L1PB1 5432 - 16 318 138417 4 1 0 8 1 0 11 1 0 23 1 0 25 1 0 10 12 9 15 23 12 4 1 0 14 1 0 45 1 0 15 2 1 52 2 0 9 5 1 14 1 0 10 1 0 20 chain 131716 chr2 243199373 + 181284933 181286557 L1PA7 6471 - 7 1634 27694 5 2 0 94 9 0 135 7 13 322 1 0 265 0 5 392 0 3 337 0 1 55 chain 29830 chr2 243199373 + 181317811 181318121 AluYb8 318 + 0 310 85347 310 chain 32801 chr2 243199373 + 181323045 181323401 L1PA3long 6157 + 5790 6146 79526 356 chain 13742 chr2 243199373 + 181332786 181333007 L1MB1 2102 + 118 348 145459 86 18 22 75 1 0 11 5 11 25 chain 116962 chr2 243199373 + 181356820 181358201 L1PA7 6471 - 44 1440 32141 620 0 10 168 0 5 593 chain 6047 chr2 243199373 + 181374899 181374967 L1MA5A 2387 - 1172 1240 184834 68 chain 5403 chr2 243199373 + 181387903 181388098 Tigger4a 237 + 37 139 190968 59 116 23 20 chain 23783 chr2 243199373 + 181390160 181390441 AluSc 308 - 17 298 111574 281 chain 505724 chr2 243199373 + 181391450 181397450 L1PA5 6144 - 4 6144 6482 134 1 8 8 6 0 5 0 1 692 1 0 29 0 1 90 0 1 203 8 9 1545 0 1 43 0 1 90 5 6 77 1 0 64 0 1 233 0 1 1031 7 133 553 19 10 567 17 18 436 0 14 135 chain 11185 chr2 243199373 + 181401900 181402029 L1PA5 6144 + 6006 6135 155489 129 chain 128139 chr2 243199373 + 181420738 181422723 L1PA10 4194 + 175 2081 28538 14 9 0 10 3 0 8 2 0 9 11 7 9 2 0 5 19 17 16 3 1 15 1 0 8 155 120 49 1 0 25 4 2 396 2 1 230 1 2 37 4 0 12 0 1 159 18 7 119 11 6 186 0 2 248 4 5 180 chain 5189 chr2 243199373 + 181446042 181446099 L1P1 4361 + 2492 2549 193150 57 chain 30254 chr2 243199373 + 181449776 181450092 AluYb8 318 - 2 318 84052 316 chain 525423 chr2 243199373 + 181450348 181456444 L1PA5 6144 - 0 6141 4639 248 0 1 116 1 0 487 1 0 666 5 0 173 0 1 1288 1 0 262 0 1 62 1 18 440 0 4 629 0 1 472 1 0 250 1 0 821 35 51 18 1 15 117 chain 5316 chr2 243199373 + 181481848 181481921 MADE1 96 + 3 92 191861 39 1 17 33 chain 73059 chr2 243199373 + 181487750 181488570 L1PA4 6152 + 5311 6151 46999 79 1 0 207 0 6 408 0 15 125 chain 49610 chr2 243199373 + 181505070 181505628 L1PA3long 6157 - 1182 1740 59169 558 chain 105550 chr2 243199373 + 181505628 181506780 L1PA3long 6157 + 5005 6157 35361 1152 chain 20600 chr2 243199373 + 181523737 181523979 L1PA7 6471 - 3 245 125293 242 chain 3080 chr2 243199373 + 181546203 181546237 MER58C 217 - 22 56 223340 34 chain 30880 chr2 243199373 + 181547029 181547405 MER11A 1151 - 672 1144 82716 35 0 1 149 4 0 124 0 99 64 chain 104783 chr2 243199373 + 181555931 181557152 LTR12C 1709 + 0 1709 35549 650 0 485 89 0 4 399 1 0 82 chain 58772 chr2 243199373 + 181577084 181577990 L1PREC2 3366 - 303 1194 53539 11 8 6 36 1 0 39 24 35 14 2 0 16 12 7 11 32 25 9 3 0 4 1 0 42 10 9 47 2 0 41 1 0 226 1 0 313 chain 8352 chr2 243199373 + 181578107 181578206 L1PREC2 3366 + 1487 1586 169111 99 chain 18528 chr2 243199373 + 181580847 181581208 THE1B 368 + 2 368 131431 106 26 27 42 58 63 66 17 16 46 chain 43225 chr2 243199373 + 181590187 181590739 MER41A 554 - 0 554 65141 162 0 2 390 chain 3595 chr2 243199373 + 181595871 181595912 Tigger3c 601 - 55 96 213748 41 chain 11548 chr2 243199373 + 181601984 181602117 AluYf4 310 - 0 133 154114 133 chain 58779 chr2 243199373 + 181610976 181611765 L1PA8 5853 - 0 782 53536 92 2 1 19 2 1 46 27 24 62 2 0 43 2 1 43 1 0 271 0 2 177 chain 355242 chr2 243199373 + 181629836 181634046 L1P2 5180 + 4 4234 11466 141 16 15 33 2 1 53 1 0 267 0 1 48 1 0 224 1 0 6 1 0 1534 2 0 254 0 3 324 1 25 555 1 0 455 1 2 289 chain 289807 chr2 243199373 + 181647140 181650564 L1PA6 6164 - 2 3433 14031 8 2 0 668 1 0 159 6 9 675 3 0 269 0 4 191 0 1 248 1 0 436 1 0 268 0 3 6 3 4 22 0 1 22 0 1 4 1 0 212 6 8 212 chain 72309 chr2 243199373 + 181650564 181651383 L1PA4 6152 + 5329 6152 47104 673 1 0 139 0 5 6 chain 28564 chr2 243199373 + 181671000 181671430 L1P3 4156 - 19 454 90898 24 9 6 80 22 21 64 3 0 5 7 10 53 0 9 163 chain 121819 chr2 243199373 + 181695221 181696583 L1PA3long 6157 - 8 1378 30438 130 0 7 193 0 1 1039 chain 84903 chr2 243199373 + 181696583 181697528 L1PA3long 6157 + 3823 4772 41512 539 0 4 406 chain 566148 chr2 243199373 + 181698388 181704416 L1HS 6032 - 2 6031 141 5227 0 1 801 chain 25135 chr2 243199373 + 181774872 181775196 AluY 311 + 0 311 104090 126 15 0 13 5 5 134 0 2 31 chain 19875 chr2 243199373 + 181781352 181781717 THE1B 368 + 0 368 127573 108 25 27 34 80 81 118 chain 45615 chr2 243199373 + 181785936 181786454 L1PA5 6144 - 0 518 62386 518 chain 27655 chr2 243199373 + 181791197 181791597 MLT2A1 477 + 0 385 94197 82 1 2 58 0 1 22 4 8 22 31 11 113 5 4 62 chain 13519 chr2 243199373 + 181820859 181821023 L1PA7 6471 - 6 167 146286 6 3 0 155 chain 33495 chr2 243199373 + 181829499 181829945 THE1-int 844 + 389 826 78419 66 15 14 235 5 0 68 2 0 34 1 0 20 chain 9495 chr2 243199373 + 181856325 181856495 MER30 238 + 62 238 163101 29 0 3 14 17 23 56 18 15 36 chain 168827 chr2 243199373 + 181897515 181899411 L1PA5 6144 + 4237 6141 22184 106 2 6 942 0 4 846 chain 13659 chr2 243199373 + 181916991 181917190 MER107 203 + 0 203 145747 39 2 0 43 0 1 73 15 20 27 chain 29682 chr2 243199373 + 181925833 181926149 AluYb8 318 - 3 318 85896 189 1 0 126 chain 24107 chr2 243199373 + 181949069 181949359 AluY 311 + 2 293 109705 116 0 1 174 chain 527226 chr2 243199373 + 181953653 181960106 L1PA7 6471 + 3 6469 4475 194 0 1 43 2 3 42 2 3 400 7 10 1308 0 1 27 1 0 605 0 10 446 0 4 134 4 0 7 20 24 270 13 0 80 3 1 7 0 1 133 0 1 77 0 1 173 1 0 244 7 8 56 0 2 166 0 1 88 1 0 4 0 1 614 0 4 175 0 1 246 1 0 8 0 1 345 6 5 483 2 0 8 chain 11984 chr2 243199373 + 181964828 181964980 L1P2 5180 - 4345 4495 152272 42 1 0 6 1 0 102 chain 11107 chr2 243199373 + 181984372 181984536 MER30 238 - 0 178 155781 100 1 28 12 13 0 38 chain 6829 chr2 243199373 + 181993505 181993578 L1PA4 6152 + 6078 6151 178007 73 chain 32143 chr2 243199373 + 181993578 181993949 L1PA6 6164 + 5782 6162 80624 337 0 9 34 chain 12356 chr2 243199373 + 182009662 182010342 LTR12D 1347 - 266 752 150816 29 21 20 10 4 0 11 363 260 45 99 13 98 chain 5256 chr2 243199373 + 182010145 182010233 LTR12D 1347 - 700 912 190097 16 11 136 55 1 0 5 chain 62993 chr2 243199373 + 182045563 182046277 L1PA3long 6157 - 1175 1867 51412 205 23 1 486 chain 107502 chr2 243199373 + 182046277 182047441 L1PA3long 6157 + 4993 6157 34844 1164 chain 6614 chr2 243199373 + 182049236 182049376 MLT1A1 405 + 0 153 180349 16 35 49 67 2 1 20 chain 7942 chr2 243199373 + 182149358 182149485 L1P4 1494 - 1277 1402 171364 72 1 0 12 18 17 24 chain 44593 chr2 243199373 + 182164623 182165147 L1PA7 6471 + 5797 6322 63489 516 0 1 8 chain 10289 chr2 243199373 + 182165147 182165270 L1PA7 6471 + 6348 6470 159182 118 1 0 4 chain 46313 chr2 243199373 + 182193271 182194142 L1PA14 3548 + 2619 3452 61764 46 27 27 46 14 16 27 0 2 154 4 2 14 2 0 47 9 5 41 7 8 56 14 13 8 2 0 6 1 0 77 15 14 57 33 13 22 26 21 38 4 2 12 1 0 5 1 0 17 1 0 37 chain 8441 chr2 243199373 + 182195988 182196178 MSTD 398 - 207 398 168614 18 3 23 12 26 6 50 10 11 48 1 0 4 5 6 13 chain 147142 chr2 243199373 + 182210923 182212532 L1PA3long 6157 + 4535 6144 25009 1609 chain 470780 chr2 243199373 + 182275686 182281965 L1PA8A 6298 + 79 6287 8008 22 3 0 18 19 10 18 2 1 9 2 1 11 2 1 7 0 1 11 2 0 15 2 0 4 1 0 12 47 38 7 1 0 43 2 0 23 6 0 77 2 0 18 1 0 5 6 4 58 0 3 91 16 15 139 0 1 4 17 20 6 0 1 354 12 0 14 1 0 7 1 2 72 13 2 32 6 9 83 0 3 56 0 1 84 1 0 46 24 23 4 0 1 312 17 4 335 0 1 185 2 1 106 33 27 221 5 9 366 29 13 6 4 0 239 6 1 42 2 0 5 7 10 26 1 0 26 0 6 307 1 0 64 0 1 192 1 0 414 0 13 113 0 1 40 0 2 197 0 1 637 1 4 328 1 0 65 1 0 5 6 3 293 1 2 98 chain 40877 chr2 243199373 + 182297179 182297775 L1PB2 3958 - 183 767 68050 22 2 0 35 19 19 20 1 0 8 0 3 51 1 0 55 0 2 108 4 0 14 2 0 60 5 0 17 1 0 52 2 0 102 2 3 13 chain 251061 chr2 243199373 + 182313466 182316270 L1PA5 6144 - 0 2810 16173 136 0 2 705 0 4 1963 chain 61462 chr2 243199373 + 182334108 182334802 L1PA5 6144 + 5450 6144 52129 153 1 0 146 0 1 394 chain 36943 chr2 243199373 + 182354567 182355027 LTR2 463 - 0 463 73596 88 12 13 23 0 1 191 0 1 146 chain 29035 chr2 243199373 + 182355983 182356291 AluYg6 310 + 1 309 88830 308 chain 11558 chr2 243199373 + 182416066 182416201 L1PA8A 6298 + 5354 5489 154073 135 chain 16506 chr2 243199373 + 182416207 182416428 L1PA8A 6298 + 5499 5731 136899 81 8 7 37 6 18 89 chain 108696 chr2 243199373 + 182420985 182422224 L1PA5 6144 - 14 1256 34514 132 1 0 697 0 4 409 chain 28945 chr2 243199373 + 182426153 182426520 MER4D 903 + 187 556 89243 26 0 2 341 chain 18114 chr2 243199373 + 182433414 182433617 L1PA2 6032 - 4 206 132554 19 1 0 183 chain 14331 chr2 243199373 + 182473833 182473996 L1PA2 6032 - 1 164 143456 163 chain 62963 chr2 243199373 + 182528083 182528777 L1PA3long 6157 - 940 1633 51309 502 1 0 191 chain 83707 chr2 243199373 + 182528777 182529706 L1PA3long 6157 + 5218 6152 42034 89 0 1 238 0 4 602 chain 26189 chr2 243199373 + 182575790 182576132 THE1A 353 + 0 341 99243 15 3 1 31 0 1 46 1 0 69 0 1 177 chain 120082 chr2 243199373 + 182576144 182577708 THE1A-int 1579 + 0 1579 31030 36 0 1 41 0 1 53 0 1 283 23 26 60 2 1 411 3 13 191 2 0 191 0 1 201 4 5 63 chain 21590 chr2 243199373 + 182578427 182578773 THE1B 368 + 0 349 121804 175 1 0 5 0 1 4 2 1 9 0 3 9 23 26 9 2 1 63 7 6 37 chain 517903 chr2 243199373 + 182596380 182602555 L1PA6 6164 + 0 6162 5387 411 1 0 5 10 11 32 7 6 503 16 1 583 0 4 481 0 1 221 1 2 576 1 0 348 1 0 4 0 1 1499 0 3 39 0 3 457 4 1 420 0 2 538 7 0 10 chain 228434 chr2 243199373 + 182612736 182615544 L1P3 4156 - 1136 3976 17391 133 0 4 195 1 15 35 0 2 378 1 0 349 0 1 135 0 10 270 0 1 231 6 0 8 1 7 57 0 1 301 0 1 425 0 1 4 1 0 52 1 2 80 1 0 71 1 0 71 chain 286091 chr2 243199373 + 182631371 182634613 L1PA4 6152 - 9 3271 14280 47 0 1 91 0 1 5 1 2 1672 0 1 157 0 16 985 1 0 41 0 1 242 chain 514257 chr2 243199373 + 182663290 182669430 L1PA6 6164 - 2 6164 5752 9 0 2 87 1 5 56 6 5 491 1 0 1141 14 18 697 0 2 349 1 0 32 0 3 65 3 4 613 0 4 253 0 1 650 1 3 6 2 0 346 0 1 69 1 2 264 0 1 209 8 9 198 1 0 48 0 2 135 1 0 382 chain 27734 chr2 243199373 + 182793356 182793652 AluYa5 310 - 15 310 93922 177 1 0 118 chain 54401 chr2 243199373 + 182795845 182796447 L1PA4 6152 - 12 614 56097 602 chain 63162 chr2 243199373 + 182820655 182821447 L1PA7 6471 - 47 825 51375 102 6 3 7 1 0 5 15 0 7 4 5 360 0 3 232 6 7 47 chain 28753 chr2 243199373 + 182845654 182845954 AluYa5 310 - 10 310 90101 300 chain 557177 chr2 243199373 + 182889942 182895966 L1PA2 6032 - 8 6032 592 6024 chain 25242 chr2 243199373 + 182935414 182935821 MSTA 426 - 12 416 103517 169 29 33 12 3 0 32 44 40 118 chain 8487 chr2 243199373 + 182959421 182959546 MER85 139 - 12 139 168370 22 11 12 15 0 1 77 chain 124795 chr2 243199373 + 182983643 182985042 L1PA4 6152 - 11 1411 29451 243 1 0 1109 0 2 46 chain 15785 chr2 243199373 + 182985042 182985216 L1P1 4361 + 3140 3314 138997 174 chain 253384 chr2 243199373 + 182987589 182990777 L1PA7 6471 - 6 3140 16062 144 0 7 6 5 0 171 0 1 515 1 0 384 1 0 217 41 1 34 1 0 36 1 0 258 0 2 208 0 2 82 11 5 16 6 8 132 1 0 314 0 1 90 0 2 303 19 4 191 chain 236378 chr2 243199373 + 183039479 183042221 L1PA6 6164 - 5 2808 16960 505 0 61 2237 chain 72099 chr2 243199373 + 183045071 183046246 L1PA10 4194 - 2874 4019 47437 18 2 1 31 21 8 98 1 0 680 8 6 68 26 17 9 3 0 4 1 0 8 102 86 14 6 4 16 11 36 10 2 0 6 3 0 13 2 0 12 chain 3520 chr2 243199373 + 183074195 183074239 MSTA 426 - 374 417 215057 31 1 0 12 chain 547916 chr2 243199373 + 183077132 183083148 L1PA3long 6157 + 0 6149 1718 72 0 1 79 0 1 624 1 129 343 1 0 601 0 4 4295 chain 33165 chr2 243199373 + 183120811 183121168 L1PA2 6032 - 0 357 78960 357 chain 22884 chr2 243199373 + 183121168 183121414 L1PA2 6032 + 5448 5694 116170 246 chain 5274 chr2 243199373 + 183129532 183129592 L1PB2 3958 + 3778 3838 192269 60 chain 88358 chr2 243199373 + 183141001 183142125 MER11A 1151 + 7 1151 40243 199 1 3 85 0 11 83 0 1 450 16 23 33 1 0 76 0 1 113 8 7 59 chain 26280 chr2 243199373 + 183159784 183160066 AluYb8 318 - 2 284 98903 282 chain 18308 chr2 243199373 + 183187004 183187287 THE1B 368 + 0 306 132060 169 1 0 21 7 10 14 0 4 12 1 0 9 14 32 35 chain 128380 chr2 243199373 + 183196013 183197555 L1PA7 6471 - 3939 5493 28434 106 0 3 664 1 0 378 1 0 95 9 0 63 1 21 224 chain 324019 chr2 243199373 + 183197555 183201492 L1PA7 6471 + 2558 6457 12435 75 4 0 38 0 1 682 0 1 631 65 20 775 0 10 363 1 0 250 1 2 215 1 0 836 chain 13652 chr2 243199373 + 183201512 183201687 L1PA8A 6298 + 6115 6291 145773 68 6 7 101 chain 38888 chr2 243199373 + 183221472 183221914 L1PA5 6144 + 5698 6140 70884 442 chain 25665 chr2 243199373 + 183242579 183242872 AluYf4 310 - 17 310 101428 293 chain 130878 chr2 243199373 + 183250557 183252154 SVA_C 1631 + 16 1624 27890 6 2 0 14 3 5 11 12 0 147 0 7 47 0 8 586 62 23 9 0 1 27 0 45 52 0 1 619 chain 2530 chr2 243199373 + 183251385 183251447 SVA_C 1631 + 767 829 148649 62 chain 109963 chr2 243199373 + 183257206 183258812 THE1B-int 1605 - 5 1560 34226 344 0 1 97 13 15 110 5 6 263 0 9 44 34 29 34 4 5 25 0 1 116 0 3 16 8 9 22 35 22 29 17 16 113 0 3 152 0 3 10 57 0 58 chain 174311 chr2 243199373 + 183259233 183261568 HERVL-int 5654 + 1894 5654 21559 11 0 2 53 0 1 31 8 7 22 9 10 178 0 1 135 34 35 392 0 2 173 0 29 58 17 18 24 1 24 500 1 15 92 1 2 5 1 0 192 0 1354 8 0 1 160 4 0 225 chain 195403 chr2 243199373 + 183265792 183268507 L1PA7 6471 + 3850 6256 19550 167 2 3 67 0 1 314 4 0 205 0 2 160 0 1 179 1 0 366 3 1 276 1 2 106 0 2 7 4 5 342 0 1 37 313 0 41 1 2 119 chain 17336 chr2 243199373 + 183268510 183268720 L1PA7 6471 + 6260 6470 134690 210 chain 92682 chr2 243199373 + 183294843 183295844 L1HS 6032 + 5026 6030 38758 5 0 2 846 0 1 150 chain 28249 chr2 243199373 + 183315823 183316126 AluYa5 310 + 0 302 92117 132 1 0 170 chain 217125 chr2 243199373 + 183318208 183320642 L1PA4 6152 + 3702 6150 18048 1335 0 1 53 0 12 891 0 1 155 chain 23940 chr2 243199373 + 183326770 183327042 L1PA5 6144 + 5860 6144 110691 40 0 12 232 chain 12228 chr2 243199373 + 183337691 183337847 L1PA3long 6157 - 0 150 151308 99 13 7 44 chain 7408 chr2 243199373 + 183349074 183349164 L1PA14 3548 + 3242 3332 174727 90 chain 20016 chr2 243199373 + 183358010 183358260 L1PA5 6144 - 4 250 127094 9 5 0 133 1 0 5 1 3 96 chain 25738 chr2 243199373 + 183358266 183358568 L1PA5 6144 + 5598 5900 101125 302 chain 22485 chr2 243199373 + 183373538 183373789 L1PA2 6032 - 2 253 118083 251 chain 3815 chr2 243199373 + 183380782 183380835 MLT1D 503 - 0 52 210162 33 1 0 19 chain 27680 chr2 243199373 + 183396434 183396776 L1PA6 6164 - 4 347 94114 202 1 2 139 chain 32351 chr2 243199373 + 183401998 183402383 L1PA7 6471 + 6083 6468 80274 385 chain 67243 chr2 243199373 + 183417253 183418035 LTR17 781 + 0 781 49548 121 0 9 169 10 0 28 0 1 164 1 0 289 chain 496625 chr2 243199373 + 183424803 183430267 L1PA3long 6157 - 11 5490 7028 787 0 3 48 0 5 297 0 1 990 0 2 1652 0 2 676 0 2 1014 chain 28759 chr2 243199373 + 183438721 183439098 MLT2A1 477 - 82 470 90078 10 2 1 21 1 9 179 2 6 162 chain 74521 chr2 243199373 + 183439105 183440361 HERVL-int 5654 - 0 946 46257 74 0 3 147 0 15 51 0 3 20 341 0 539 0 10 84 chain 4330 chr2 243199373 + 183440371 183440421 HERVL-int 5654 + 4848 4899 202840 21 0 1 29 chain 96183 chr2 243199373 + 183473041 183474480 LTR12C 1709 + 0 1709 37774 12 9 30 22 15 31 167 0 1 15 12 24 36 0 43 78 26 33 112 5 6 40 0 119 68 1 0 156 0 2 76 0 47 90 24 0 16 11 4 62 30 31 258 14 46 84 chain 10434 chr2 243199373 + 183496039 183496160 L1PA3long 6157 - 1 122 158553 121 chain 116661 chr2 243199373 + 183540844 183542597 L1PREC2 3366 + 1249 3030 32240 53 0 24 120 0 2 8 3 1 134 4 0 77 11 12 34 4 6 45 1 2 406 0 2 160 0 1 114 0 7 193 11 20 42 1 0 37 15 32 25 1 0 28 0 8 8 1 0 4 3 0 13 29 21 17 6 1 15 3 1 25 0 1 4 4 0 11 22 8 35 8 6 18 chain 530919 chr2 243199373 + 183551281 183557399 L1PA5 6144 + 3 6137 4091 57 0 1 417 5 1 585 0 1 122 0 3 152 0 1 1030 0 1 911 1 0 439 0 1 564 0 1 991 0 1 12 1 5 75 0 2 301 0 2 5 0 2 124 1 2 325 chain 19897 chr2 243199373 + 183560193 183560422 AluY 311 + 82 311 127490 229 chain 9902 chr2 243199373 + 183572948 183573061 THE1B 368 - 255 368 161061 113 chain 23509 chr2 243199373 + 183574631 183574910 AluSc5 308 - 18 297 113082 279 chain 353671 chr2 243199373 + 183610468 183614416 L1PA3long 6157 - 1 4035 11510 184 0 1 187 0 1 191 5 8 276 0 4 942 0 2 1160 0 75 1003 chain 508853 chr2 243199373 + 183633560 183639721 L1PA6 6164 - 5 6164 6255 836 0 6 105 0 1 303 0 5 538 2 10 385 0 2 226 23 2 470 1 5 75 0 1 16 0 4 301 1 2 280 0 4 190 0 1 53 35 11 375 0 4 91 0 4 261 0 3 74 0 2 67 1 0 536 0 4 339 1 0 48 0 2 48 11 10 220 0 2 66 17 6 10 11 10 145 chain 176651 chr2 243199373 + 183645698 183647900 L1PA7 6471 - 1 2273 21288 12 0 2 146 1 0 12 5 6 89 0 2 104 2 4 458 7 14 15 0 4 128 0 5 153 7 9 33 1 0 202 0 1 17 1 31 38 4 0 110 4 5 40 1 0 55 0 3 287 0 4 43 0 8 137 0 1 39 0 1 44 0 3 7 chain 12090 chr2 243199373 + 183669433 183669635 L1PA16 3655 - 36 219 151838 14 32 16 12 3 0 141 chain 45245 chr2 243199373 + 183685985 183686581 LTR8 732 - 55 732 62775 29 2 0 14 19 102 532 chain 4068 chr2 243199373 + 183689159 183689205 MADE1 96 - 50 96 206350 46 chain 24495 chr2 243199373 + 183713681 183713958 AluY 311 + 8 286 107569 120 1 2 156 chain 4945 chr2 243199373 + 183718622 183718810 L1ME3A 1206 + 945 1135 195750 48 100 109 13 7 0 20 chain 7857 chr2 243199373 + 183738581 183738675 U6 107 + 13 107 171951 94 chain 437126 chr2 243199373 + 183738678 183745351 L1PA7 6471 + 1235 6466 9121 201 15 12 45 1449 0 1148 19 5 41 0 4 793 9 8 509 1 0 331 0 15 243 0 1 363 0 1 552 0 3 113 0 4 668 17 15 156 chain 129844 chr2 243199373 + 183738954 183740382 L1PA4 6152 + 4711 6140 28126 1229 0 1 199 chain 35931 chr2 243199373 + 183746458 183746848 L1PA2 6032 + 5639 6029 74979 390 chain 17736 chr2 243199373 + 183810383 183810746 L1PA15 4387 + 4016 4355 133607 32 1 0 55 2 1 27 9 8 46 1 0 23 4 0 7 4 3 14 9 4 30 13 10 23 37 30 26 chain 22307 chr2 243199373 + 183810856 183811139 AluY 311 + 11 292 118885 112 1 0 9 0 1 119 1 0 24 6 5 11 chain 207331 chr2 243199373 + 183824126 183826459 L1PA4 6152 + 3799 6143 18695 463 0 3 86 0 4 939 0 2 136 1 0 385 0 3 323 chain 17799 chr2 243199373 + 183863927 183864224 L1PA17 2846 + 2413 2693 133410 103 2 0 5 16 12 59 2 0 8 1 0 32 1 0 8 6 0 9 1 0 44 chain 8278 chr2 243199373 + 183887594 183887698 HY1 111 - 6 110 169522 104 chain 6732 chr2 243199373 + 183897793 183897908 MER47B 469 - 75 251 179459 56 0 11 22 15 65 22 chain 18734 chr2 243199373 + 183908924 183909194 LTR7 482 + 164 469 130867 60 5 37 43 0 2 113 15 16 34 chain 208632 chr2 243199373 + 183909209 183912043 HERVH-int 3825 + 0 3000 18594 333 1 0 77 61 65 10 1 0 30 0 2 5 0 3 5 14 1 16 0 1 11 49 219 451 15 0 189 0 11 41 1 0 65 9 18 54 7 1 477 6 11 312 0 1 5 41 40 95 2 1 46 1 0 404 chain 19639 chr2 243199373 + 183914004 183914370 LTR7 482 + 0 474 128285 23 13 36 42 15 14 17 0 51 41 5 37 46 0 1 47 22 23 41 13 14 41 chain 43071 chr2 243199373 + 183914999 183915507 MER9a3 513 - 0 513 65334 57 0 4 303 0 1 148 chain 156622 chr2 243199373 + 183915507 183917411 HERVK9-int 4720 - 0 4586 23783 134 0 3 318 0 1 14 1 2 640 7 2685 760 2 1 28 chain 44101 chr2 243199373 + 183917982 183918495 MER9a3 513 - 0 513 64085 513 chain 45544 chr2 243199373 + 183956012 183956610 MER51A 677 - 16 669 62465 72 8 0 357 0 63 14 0 1 14 1 0 132 chain 32532 chr2 243199373 + 183965333 183965823 L1MA3 4352 - 151 617 79970 77 66 42 347 chain 141611 chr2 243199373 + 183965892 183967628 L1PA8 5853 - 0 1742 25878 92 2 1 19 2 1 51 1 0 8 1 0 38 0 9 24 2 0 50 1 0 53 0 1 79 0 2 338 2 3 52 5 4 14 2 1 14 0 1 196 0 1 430 0 1 36 1 0 223 chain 6272 chr2 243199373 + 183986652 183986722 L1PA5 6144 - 6 76 182987 70 chain 13918 chr2 243199373 + 183993227 183993425 MER30 238 - 0 210 144861 115 3 0 8 6 21 66 chain 13804 chr2 243199373 + 184017030 184017372 L1PB1 5432 - 5 298 145256 5 2 0 18 1 0 13 1 0 11 9 10 24 2 0 14 1 0 5 2 0 11 0 1 4 10 1 10 2 0 4 1 0 16 1 0 44 1 0 15 2 1 41 49 23 10 1 0 12 chain 122865 chr2 243199373 + 184017982 184019534 THE1A-int 1579 - 9 1576 30090 56 8 7 8 0 5 253 1 0 127 5 7 799 1 2 173 0 1 13 0 8 108 chain 22949 chr2 243199373 + 184019536 184019871 THE1A 353 - 0 341 115867 130 12 15 18 0 3 77 6 5 18 5 6 69 chain 29469 chr2 243199373 + 184031740 184032287 MLT2A1 477 + 0 476 86762 13 0 4 125 0 1 26 1 5 20 5 12 33 15 8 138 104 28 10 3 0 35 1 0 18 chain 4395 chr2 243199373 + 184032162 184032211 L1PREC2 3366 - 2713 2762 202008 49 chain 144724 chr2 243199373 + 184032310 184035059 L1PA15 4387 - 675 3541 25366 364 277 18 146 1 3 13 2 0 136 9 10 125 7 0 7 9 16 159 0 4 284 0 14 7 7 1 4 1 0 78 21 22 78 359 691 47 54 69 12 0 1 184 0 3 33 8 19 124 1 0 59 7 4 21 1 6 104 chain 395504 chr2 243199373 + 184039071 184044102 L1PA8 5853 - 0 5803 10257 92 2 1 19 2 1 40 7 6 15 5 4 67 2 0 46 1 0 67 31 11 394 1 0 4 0 2 76 0 1 13 0 1 331 1 0 257 2 1 42 1 0 301 0 4 457 5 7 141 0 1 390 0 16 37 1 2 328 1 3 46 0 4 123 0 788 157 0 5 296 3 2 142 0 5 81 0 3 37 0 1 65 1 2 135 1 4 36 0 1 271 17 18 144 0 4 197 52 13 13 2 1 10 2 0 21 chain 6549 chr2 243199373 + 184052817 184052894 MER50B 698 + 573 652 180858 44 0 2 33 chain 42018 chr2 243199373 + 184070390 184070924 MLT2A2 560 + 4 560 66597 166 0 1 225 0 17 87 1 0 4 0 1 41 0 4 10 chain 40218 chr2 243199373 + 184073163 184073703 MER41A 554 + 0 554 69007 247 1 2 22 0 2 105 29 33 16 0 1 40 0 5 72 0 1 8 chain 59616 chr2 243199373 + 184074994 184076005 L1PA5 6144 - 12 721 53042 133 11 18 298 0 4 201 313 0 55 chain 28949 chr2 243199373 + 184075643 184075950 AluYa5 310 - 4 310 89225 180 1 0 126 chain 8791 chr2 243199373 + 184081398 184081539 MER65A 464 + 189 329 166698 38 22 20 61 0 1 20 chain 9274 chr2 243199373 + 184087925 184088029 L1PA3long 6157 + 6049 6153 164196 104 chain 29167 chr2 243199373 + 184097673 184098022 L1PA7 6471 - 24 369 88217 160 4 0 185 chain 25884 chr2 243199373 + 184122390 184122685 AluY 311 + 0 291 100506 126 4 0 165 chain 15814 chr2 243199373 + 184123964 184124313 THE1B 368 + 7 368 138913 57 1 4 40 8 9 52 68 74 59 12 11 19 15 18 18 chain 12319 chr2 243199373 + 184126843 184126987 L1PA5 6144 - 6 150 150943 144 chain 109899 chr2 243199373 + 184126999 184128234 L1PA5 6144 + 4730 5972 34238 254 0 4 472 0 3 509 chain 7376 chr2 243199373 + 184130810 184130927 L1PB4 2604 + 2456 2572 174926 86 11 10 20 chain 6656 chr2 243199373 + 184135894 184135999 L1MA8 2339 - 369 463 180036 16 2 0 23 8 0 49 1 0 6 chain 36439 chr2 243199373 + 184147059 184147477 L1PA5 6144 - 5 426 74317 51 0 1 185 0 2 182 chain 463954 chr2 243199373 + 184159146 184166003 L1PA7 6471 - 10 6471 8260 174 10 9 310 973 0 80 3 0 77 1 4 186 2 0 18 0 4 683 1 0 150 1 0 99 0 4 380 13 27 479 9 558 573 7 11 53 2 0 5 0 2 148 1 4 157 2 1 100 0 5 95 1 0 232 0 1 4 1 0 18 1 0 60 4 16 173 1 0 151 1 2 145 1 0 235 7 9 610 11 1 191 38 37 180 chain 50938 chr2 243199373 + 184166026 184166988 L1MA3 4352 - 0 921 58349 10 11 0 8 0 7 13 1 0 23 5 4 5 1 0 9 17 15 28 4 0 6 17 19 83 51 29 116 50 46 26 1 0 141 1 2 44 7 2 185 54 55 45 chain 17579 chr2 243199373 + 184167125 184167358 L1PA8 5853 - 18 245 134057 40 2 0 35 1 0 19 2 1 49 1 0 12 1 0 71 chain 157496 chr2 243199373 + 184186633 184189056 L1PA7 6471 - 1 2051 23610 12 0 1 141 0 1 8 379 0 189 5 4 411 1 0 82 1 2 109 0 2 26 0 1 144 5 6 133 1 2 44 24 25 43 6 7 99 8 0 279 5 6 164 0 4 59 1 2 44 chain 12190 chr2 243199373 + 184186874 184187013 L1PA7 6471 - 246 385 151454 139 chain 10974 chr2 243199373 + 184187014 184187165 L1PA7 6471 - 1 146 156301 11 0 4 124 10 0 6 chain 160036 chr2 243199373 + 184189056 184191098 L1P2 5180 + 1658 4424 23333 95 0 4 38 11 10 513 3 1 62 1 0 4 0 1 190 0 4 206 0 4 210 0 718 183 9 1 344 3 4 104 0 4 66 chain 156539 chr2 243199373 + 184195639 184197588 L1PA7 6471 + 4504 6460 23794 103 7 9 80 0 6 5 6 0 277 0 1 259 1 0 92 0 1 144 0 1 26 0 2 109 1 2 76 7 6 411 5 4 203 3 1 94 0 4 40 chain 26005 chr2 243199373 + 184219557 184219912 MLT2A1 477 - 115 477 99996 137 1 2 13 0 1 34 23 27 5 0 1 142 chain 180704 chr2 243199373 + 184231391 184233661 L1PA7 6471 - 3 2299 20921 9 12 0 122 4 6 178 0 1 502 0 5 17 8 4 7 0 3 55 0 4 69 0 20 744 9 0 76 0 2 338 20 4 19 0 30 81 chain 29663 chr2 243199373 + 184249999 184250309 AluYa5 310 - 0 310 86004 310 chain 25660 chr2 243199373 + 184252610 184253041 L1PREC2 3366 - 2814 3227 101451 81 2 1 11 6 4 50 1 0 115 2 1 32 15 12 12 1 0 24 1 0 7 10 5 17 3 1 9 1 0 31 chain 19350 chr2 243199373 + 184259122 184259618 THE1B 368 + 0 368 129071 44 15 30 98 2 1 25 35 45 40 164 12 73 chain 112978 chr2 243199373 + 184267111 184268367 L1PA4 6152 - 73 1328 33383 689 1 0 566 chain 8632 chr2 243199373 + 184273401 184273545 MER67D 511 - 278 436 167578 28 1 0 29 2 21 12 16 12 56 chain 442480 chr2 243199373 + 184281659 184287312 L1PA8 5853 + 50 5853 8980 22 2 0 14 58 22 171 0 1 22 12 0 316 0 1 7 1 5 31 13 6 51 13 11 5 0 2 14 0 1 250 1 0 165 0 3 178 0 1 149 0 1 29 1 0 275 7 0 102 0 2 19 0 184 255 0 1 372 1 2 4 1 0 126 0 1 17 2 0 69 0 1 5 4 6 422 0 3 33 0 1 269 0 1 29 7 6 261 0 1 44 1 0 67 0 3 94 0 4 241 0 1 39 14 14 78 0 4 389 5 6 28 0 2 526 5 6 19 14 13 35 2 0 74 1 0 11 6 5 25 0 2 19 2 1 15 1 0 93 chain 38387 chr2 243199373 + 184290400 184290843 L1PA5 6144 - 12 455 71590 443 chain 39717 chr2 243199373 + 184296409 184296873 L1PA7 6471 + 6000 6466 69731 72 1 2 202 0 2 36 1 0 152 chain 12694 chr2 243199373 + 184301673 184301875 MER30 238 + 0 238 149470 12 10 35 60 4 18 70 3 0 43 chain 544775 chr2 243199373 + 184313042 184319204 L1PA4 6152 - 6 6152 2099 619 0 1 142 1 0 383 0 1 269 0 1 2615 0 1 803 1 0 4 0 1 428 1 0 42 26 9 251 1 0 576 chain 59197 chr2 243199373 + 184326100 184326868 L1PA7 6471 - 10 796 53286 262 1 2 65 0 1 68 0 1 5 1 0 35 0 8 110 0 11 164 0 10 8 14 1 35 chain 6957 chr2 243199373 + 184340522 184340617 MER2 342 + 154 248 177762 74 2 1 19 chain 124960 chr2 243199373 + 184343278 184344734 SVA_B 1603 + 0 1593 29403 22 3 1 16 0 24 381 0 39 341 0 82 53 7 3 14 1 0 179 1 0 438 chain 40992 chr2 243199373 + 184349572 184350113 MLT2A2 560 + 0 560 67919 337 0 7 44 13 25 86 1 0 6 0 1 54 chain 30798 chr2 243199373 + 184356572 184356991 L1PA7 6471 - 1 423 82867 5 2 0 6 2 0 169 0 2 112 0 1 31 3 7 72 0 1 4 1 0 12 chain 43298 chr2 243199373 + 184372096 184372632 LTR12_ 688 - 0 688 65053 157 0 103 237 0 49 142 chain 245606 chr2 243199373 + 184374127 184377184 HERV9-int 5642 - 832 5642 16477 174 0 1795 205 3 0 265 0 4 347 0 1 119 0 18 771 2 4 12 80 0 275 1 3 26 1 0 75 0 4 228 0 1 102 0 9 142 0 1 229 chain 39163 chr2 243199373 + 184394633 184395082 LTR7 482 + 0 482 70522 264 0 31 124 12 14 49 chain 504140 chr2 243199373 + 184407988 184415855 L1PA7 6471 + 18 6457 6588 350 1 2 33 2 0 9 0 1 21 12 9 289 4 0 37 58 21 55 1 0 368 0 4 542 1 0 306 1 0 29 0 22 334 1 0 83 1414 0 107 1 0 40 1 0 149 0 6 17 1 2 35 0 4 264 1 2 5 0 1 5 2 0 314 15 13 31 0 1 20 60 52 4 0 1 102 0 1 548 1 2 59 0 3 161 0 1 325 0 2 47 0 4 236 5 0 496 0 1 28 8 6 596 1 2 231 chain 108947 chr2 243199373 + 184410528 184411938 LTR12C 1709 - 0 1709 34453 84 6 5 59 1 0 333 11 4 106 8 165 99 0 118 262 10 4 6 5 0 83 0 43 41 14 15 282 chain 8942 chr2 243199373 + 184415981 184416083 L1P3 4156 + 3935 4037 165907 102 chain 24832 chr2 243199373 + 184435649 184436006 THE1B 368 + 0 368 105714 44 0 15 48 13 14 55 1 0 26 2 0 97 2 0 69 chain 3111 chr2 243199373 + 184438442 184438526 L1MA3 4352 - 94 174 222713 16 38 34 30 chain 191604 chr2 243199373 + 184447754 184450191 L1PA8 5853 - 17 2583 19902 76 1 0 19 3 2 45 1 0 15 1 0 71 6 4 40 1 0 45 1 0 424 0 1 4 1 6 73 0 2 282 0 1 29 0 110 46 0 8 59 16 1 4 0 1 250 13 15 142 0 4 67 1 10 92 0 4 241 1 4 317 0 1 4 0 1 46 chain 550943 chr2 243199373 + 184450923 184457062 L1PA3long 6157 + 1 6157 1324 556 1 2 630 0 3 305 0 1 64 0 2 1145 0 5 583 0 1 1398 0 1 622 1 0 693 0 7 132 3 0 6 chain 490547 chr2 243199373 + 184480746 184487137 L1PA7 6471 - 6 6468 7341 13 0 1 130 0 2 6 2 0 25 0 1 433 0 1 45 5 8 84 1 4 8 1 4 9 1 0 71 0 6 214 0 1 301 11 12 276 0 2 136 13 17 335 0 3 70 0 1 47 0 3 153 0 1 40 6 4 63 0 3 353 21 30 58 8 0 55 0 1 18 7 8 242 4 5 119 0 11 9 21 23 63 0 6 19 0 1 18 0 4 161 3 0 86 1 0 6 1 4 35 0 6 65 4 0 29 0 1 116 0 1 350 5 2 64 6 7 118 0 1 199 0 3 909 37 37 275 17 21 390 chain 23416 chr2 243199373 + 184489668 184489991 THE1C 375 + 0 322 113562 129 7 9 43 2 0 5 1 0 136 chain 56274 chr2 243199373 + 184501021 184501654 L1PA4 6152 - 14 640 54979 137 7 0 489 chain 28041 chr2 243199373 + 184522911 184523266 THE1A 353 + 0 353 92851 88 1 0 21 2 1 243 chain 15953 chr2 243199373 + 184535418 184535603 L1PA2 6032 + 5848 6026 138508 27 7 0 151 chain 4356 chr2 243199373 + 184547649 184547825 MLT1D 503 + 12 174 202483 10 1 0 12 10 11 23 88 74 32 chain 21784 chr2 243199373 + 184548924 184549180 L1PA8 5853 + 5266 5522 121083 256 chain 22903 chr2 243199373 + 184549184 184549519 L1PA8 5853 + 5525 5853 116094 39 1 0 44 2 0 69 5 4 7 1 0 52 2 1 14 6 5 93 chain 15224 chr2 243199373 + 184572441 184572792 THE1B 368 + 9 366 140703 98 31 32 38 67 72 11 16 17 29 7 6 54 chain 5369 chr2 243199373 + 184588264 184588350 L1PB1 5432 + 5338 5420 191313 8 2 0 45 1 0 13 1 0 16 chain 43840 chr2 243199373 + 184605482 184605974 L1PA3long 6157 - 1915 2411 63952 269 0 4 223 chain 158378 chr2 243199373 + 184605974 184607726 L1PA3long 6157 + 4247 6003 23546 1065 0 4 687 chain 13572 chr2 243199373 + 184607733 184607886 L1PA3long 6157 + 6003 6157 146089 146 0 1 7 chain 128328 chr2 243199373 + 184619867 184621886 L1PB2 3958 + 1750 3794 28488 11 11 10 146 1 2 35 13 17 146 9 10 18 0 1 96 0 4 33 13 14 179 19 22 71 0 2 51 5 9 23 0 13 43 16 18 64 28 30 86 31 23 127 0 3 73 3 4 19 1 3 135 0 2 18 2 0 45 3 6 12 2 0 64 2 0 14 17 13 79 24 24 10 2 1 4 0 1 33 1 0 62 1 0 76 2 0 20 1 0 19 chain 4318 chr2 243199373 + 184634279 184634345 MER5A 189 + 6 73 202991 17 5 6 44 chain 27539 chr2 243199373 + 184637727 184638093 THE1B 368 + 0 368 94540 15 2 0 21 1 6 130 2 1 195 chain 175515 chr2 243199373 + 184639785 184641965 L1PA7 6471 - 5 2184 21393 133 1 14 10 7 3 153 0 1 19 5 6 37 3 1 467 3 0 6 0 2 210 0 1 219 1 2 110 0 1 78 18 2 6 1 0 11 0 1 25 1 0 276 0 4 46 0 1 334 chain 7089 chr2 243199373 + 184645716 184645798 L1PA4 6152 + 6070 6152 176837 82 chain 156614 chr2 243199373 + 184653361 184655191 L1P1 4361 + 4 1835 23784 356 0 1 1474 chain 143955 chr2 243199373 + 184655950 184658043 SVA_A 1864 - 0 1811 25483 43 2 4 572 10 8 27 13 11 54 22 19 175 39 0 66 1 0 25 40 0 10 40 0 87 1 0 58 37 0 122 15 14 37 39 0 98 79 0 381 chain 2064 chr2 243199373 + 184656868 184656907 SVA_A 1864 - 802 839 73392 1 11 9 27 chain 1949 chr2 243199373 + 184657235 184657272 SVA_A 1864 - 936 973 59477 37 chain 1897 chr2 243199373 + 184657449 184657485 SVA_A 1864 - 1145 1179 59477 22 2 0 6 5 5 1 chain 368560 chr2 243199373 + 184658043 184662282 L1PA5 6144 + 1881 6144 11136 159 0 3 1152 3 1 16 0 1 153 0 1 41 0 1 1698 0 11 238 0 1 6 10 24 423 1 2 180 7 0 152 chain 25810 chr2 243199373 + 184665134 184665473 L1PA8A 6298 + 5547 5863 100829 142 18 0 3 5 0 171 chain 23687 chr2 243199373 + 184673611 184673894 AluSg7 307 - 13 295 112109 185 1 0 97 chain 3587 chr2 243199373 + 184691348 184691445 L1MA2 4263 + 4012 4102 213869 17 45 38 35 chain 491515 chr2 243199373 + 184706272 184712702 L1PA7 6471 + 3 6470 7293 145 40 5 131 22 23 96 1 2 218 8 3 51 43 44 97 0 1 257 0 1 141 13 16 18 1 2 295 0 2 4 1 0 207 3 2 132 0 3 10 4 2 722 54 16 45 2 1 283 0 2 118 1 5 43 0 1 60 0 1 4 1 0 36 0 3 13 0 1 733 0 2 63 1 2 45 14 91 34 7 8 391 0 1 320 0 1 287 0 1 59 0 1 164 1 6 51 2 1 46 4 1 49 0 2 242 0 2 317 0 3 54 0 1 86 1 0 127 0 2 12 chain 40552 chr2 243199373 + 184712707 184714248 L1PB1 5432 + 1290 2830 15127 105 1 0 8 6 1 19 0 3 1062 12 0 25 1 7 48 9 14 73 0 3 172 chain 536842 chr2 243199373 + 184714252 184720276 L1PA3long 6157 + 0 6157 3334 152 0 1 31 0 1 345 1 5 206 0 1 34 0 128 2285 1 0 2189 1 0 779 chain 70025 chr2 243199373 + 184720353 184723014 L1PB1 5432 + 2871 5420 15127 59 10 14 63 16 10 276 59 60 102 0 2 48 7 8 101 1 13 5 0 2 57 17 15 26 8 12 23 14 15 625 0 1 4 1 0 96 0 4 68 0 1 15 9 13 15 0 1 135 0 1 231 16 12 99 110 4 7 1 0 20 1 0 13 6 5 6 4 0 9 2 0 53 2 1 54 6 5 16 3 0 6 66 51 17 1 0 21 1 0 13 1 0 16 chain 152918 chr2 243199373 + 184742010 184744285 L1PB1 5432 - 5 2217 24240 4 1 0 19 1 0 8 5 4 19 1 0 27 24 19 19 16 6 6 3 0 16 1 0 43 1 0 16 3 2 30 0 1 16 20 14 16 1 0 4 1 0 20 49 15 106 4 6 270 7 8 78 13 11 206 8 9 250 1 2 211 0 1 213 4 3 246 2 1 66 0 1 26 0 1 5 4 3 165 chain 399338 chr2 243199373 + 184750749 184755559 HERV9-int 5642 + 0 4824 10126 254 3 4 108 8 26 54 7 8 342 2 1 306 1 0 7 3 0 352 2 0 1142 9 3 201 16 16 274 0 1 48 0 1 26 0 1 285 0 1 342 0 1 296 0 1 520 0 1 202 chain 5930 chr2 243199373 + 184757809 184757983 LTR12C 1709 + 808 903 185893 29 1 0 30 84 6 30 chain 272366 chr2 243199373 + 184777873 184780929 L1PA4 6152 - 1 3060 15055 455 0 1 817 0 1 836 0 1 948 chain 230635 chr2 243199373 + 184780929 184783575 L1PA4 6152 + 441 3091 17270 19 6 0 116 1 0 399 0 1 1461 0 4 256 5 0 6 0 5 186 10 16 181 chain 186980 chr2 243199373 + 184834335 184836413 L1PA4 6152 - 1 2083 20335 333 0 1 62 0 3 1683 chain 12767 chr2 243199373 + 184837909 184838063 L1PA7 6471 - 1 153 149186 7 2 0 145 chain 46634 chr2 243199373 + 184839534 184840156 L1P3 4156 - 17 635 61511 26 9 6 170 10 9 407 chain 375758 chr2 243199373 + 184840171 184844504 L1P1 4361 + 2 4341 10893 178 0 5 2 5 0 1675 0 1 590 0 1 234 0 5 989 0 1 89 0 1 378 1 0 154 1 0 23 2 1 12 chain 29689 chr2 243199373 + 184862504 184862946 LTR7 482 - 5 482 85866 171 0 1 39 10 42 109 44 46 69 chain 22599 chr2 243199373 + 184865345 184865759 LTR12 884 + 517 861 117591 28 108 5 190 7 40 81 chain 4271 chr2 243199373 + 184884796 184884850 MER53 195 + 141 195 203607 54 chain 37174 chr2 243199373 + 184919005 184919448 L1PA7 6471 - 1 450 73277 11 0 4 136 5 6 223 0 1 68 chain 455356 chr2 243199373 + 184924853 184930717 L1PA8 5853 - 0 5801 8564 9 1 0 80 1 4 19 7 6 45 1 0 11 1 0 71 2 0 46 1 0 332 7 8 211 0 2 338 0 1 107 0 3 698 0 2 711 0 3 63 5 4 165 0 2 5 6 4 22 1 0 10 2 1 66 0 3 90 1 0 7 0 1 85 0 1 599 19 1 109 0 2 258 0 1 160 6 7 97 0 2 246 0 1 25 18 0 452 0 6 343 19 7 193 47 13 11 6 5 7 2 0 20 chain 9952 chr2 243199373 + 184957831 184958042 L1PB1 5432 - 130 327 160823 8 2 0 12 2 1 43 2 1 12 8 7 51 2 0 8 2 0 3 2 0 12 3 2 4 1 0 25 1 0 8 chain 50239 chr2 243199373 + 184972487 184973050 L1PA5 6144 + 5580 6144 58841 414 1 2 148 chain 23090 chr2 243199373 + 184977781 184978089 MLT2A1 477 - 165 477 115199 128 19 16 67 0 7 94 chain 35308 chr2 243199373 + 184990221 184990664 L1PA7 6471 - 12 452 75784 143 7 8 192 4 0 97 chain 24278 chr2 243199373 + 184998037 184998737 THE1D 372 + 2 360 108789 44 9 0 88 0 2 26 367 32 166 chain 3938 chr2 243199373 + 185011171 185011217 L1ME3A 1206 - 191 237 208299 46 chain 35320 chr2 243199373 + 185016656 185017093 LTR10F 562 + 2 562 75771 85 0 3 26 0 119 65 0 1 261 chain 10124 chr2 243199373 + 185022880 185023039 L1MA2 4263 - 1533 1688 159970 15 2 0 60 5 4 9 1 0 67 chain 21922 chr2 243199373 + 185032919 185033183 L1PA5 6144 - 9 273 120538 264 chain 29617 chr2 243199373 + 185033656 185034059 LTR7 482 - 12 482 86149 93 3 0 65 1 0 4 0 1 13 0 31 38 0 1 109 8 46 69 chain 32980 chr2 243199373 + 185063510 185063951 LTR7 482 + 0 477 79247 101 15 14 45 1 0 56 0 1 13 0 31 125 0 2 52 0 4 33 chain 197448 chr2 243199373 + 185081674 185084327 L1PA11 4918 - 1121 3770 19395 371 5 0 572 3 0 129 1 0 4 5 6 171 1 0 5 7 8 122 3 1 21 3 0 120 6 10 12 1 5 26 1 0 234 2 1 114 0 4 47 4 1 11 4 2 187 6 10 124 7 5 237 0 2 87 chain 39858 chr2 243199373 + 185092935 185093390 L1PA5 6144 - 6 462 69521 141 0 1 314 chain 426678 chr2 243199373 + 185094685 185099456 L1PA3long 6157 - 4 4775 9380 846 1 2 594 3 1 1526 0 1 5 2 1 961 1 0 19 7 9 806 chain 322027 chr2 243199373 + 185107853 185111467 L1PA4 6152 + 2513 6131 12522 982 0 1 445 1 0 1357 0 4 829 chain 76766 chr2 243199373 + 185129576 185130597 L1PA8 5853 - 0 1019 45098 53 1 5 35 1 0 19 2 1 45 3 0 5 0 2 9 1 0 71 2 0 12 1 0 21 0 1 80 10 6 402 0 2 76 1 4 80 1 0 90 chain 40162 chr2 243199373 + 185130602 185131100 L1P3 4156 + 3642 4137 69091 465 2 0 7 2 1 22 chain 104317 chr2 243199373 + 185145338 185146585 L1PA7 6471 - 1372 2624 35486 13 0 1 136 1 0 367 0 3 575 0 2 155 chain 105179 chr2 243199373 + 185146585 185147954 L1PA7 6471 + 5089 6470 35455 49 0 1 158 0 1 174 0 1 150 13 10 82 0 1 134 12 17 234 0 2 7 2 0 27 4 6 149 0 1 31 2 1 46 11 15 84 chain 91278 chr2 243199373 + 185148246 185149363 L1PA7 6471 - 12 1139 39203 267 0 1 10 0 1 522 0 2 59 8 14 251 chain 84928 chr2 243199373 + 185149372 185150469 L1PA7 6471 + 4217 5304 41542 264 2 6 320 3 0 122 4 1 219 4 6 5 2 0 106 3 1 10 6 0 27 chain 5755 chr2 243199373 + 185189457 185189558 MER5A 189 + 36 136 187595 39 21 20 41 chain 6547 chr2 243199373 + 185192359 185192467 L1MA8 2339 - 112 216 180867 29 5 0 38 2 3 34 chain 49076 chr2 243199373 + 185216151 185216898 L1PB 1623 + 117 875 59691 54 4 1 15 1 0 4 2 0 50 2 5 23 1 0 124 7 6 14 3 0 52 1 4 16 2 1 14 22 19 5 0 3 57 0 1 181 1 17 92 chain 48917 chr2 243199373 + 185260440 185261046 L1PA8A 6298 - 686 1297 59799 122 3 1 133 0 6 140 1 2 207 chain 52648 chr2 243199373 + 185261046 185261706 L1PA8A 6298 + 5598 6277 57213 273 0 2 43 0 2 110 0 14 141 2 5 5 2 0 84 chain 78822 chr2 243199373 + 185271350 185272398 MER11A 1151 + 0 1151 44137 79 0 8 140 0 4 61 0 11 228 0 13 127 17 20 12 1 2 38 0 4 87 1 59 93 10 12 87 1 0 66 chain 22009 chr2 243199373 + 185297684 185297974 L1PA7 6471 - 8 279 120188 141 6 3 11 16 0 116 chain 46188 chr2 243199373 + 185356138 185356963 L1PA15 4387 + 3580 4345 61859 92 5 4 22 3 4 111 2 0 12 35 6 60 3 1 18 2 0 21 2 1 139 3 0 33 1 0 15 17 16 49 2 1 14 6 0 5 0 2 11 1 0 45 11 8 19 1 2 22 2 0 12 13 4 16 chain 67360 chr2 243199373 + 185359791 185360757 L1PA11 4918 + 3544 4503 49506 121 5 9 11 27 12 167 2 0 5 6 8 102 10 16 333 5 0 9 3 12 44 2 1 13 2 0 67 2 0 14 1 0 15 chain 94333 chr2 243199373 + 185362493 185363540 L1PA3long 6157 + 5110 6157 38251 267 0 1 520 1 0 259 chain 123414 chr2 243199373 + 185366456 185367964 L1PA6 6164 - 3 1862 29911 7 3 0 321 1 2 433 2 3 71 7 358 486 18 19 159 chain 5752 chr2 243199373 + 185367964 185368075 L1MA5A 2387 + 2053 2161 186116 8 3 0 7 17 19 68 2 0 6 chain 45972 chr2 243199373 + 185368113 185368657 L1P1 4361 + 3750 4292 62064 144 1 0 257 1 0 141 chain 3137 chr2 243199373 + 185389106 185389159 MER52A 1651 - 715 760 222240 19 8 0 26 chain 6132 chr2 243199373 + 185390458 185390556 MER57-int 2662 - 2464 2563 184156 52 8 10 28 1 0 9 chain 71516 chr2 243199373 + 185406931 185407759 L1PA3long 6157 + 5360 6157 47688 244 32 1 552 chain 26165 chr2 243199373 + 185420444 185420751 AluY 311 + 0 302 99343 127 5 0 175 chain 69834 chr2 243199373 + 185425716 185427008 HERVL-int 5654 + 4638 5625 48461 190 6 9 65 2 1 309 7 8 141 308 2 66 4 0 73 27 30 89 1 0 4 chain 38871 chr2 243199373 + 185427038 185427582 MLT2A2 560 + 4 560 70915 197 37 38 167 0 11 143 chain 29663 chr2 243199373 + 185430342 185430652 AluYa5 310 - 0 310 86003 310 chain 14655 chr2 243199373 + 185438231 185438442 L1PA8 5853 + 5638 5847 142408 38 4 3 61 2 1 19 1 0 81 0 1 5 chain 25917 chr2 243199373 + 185440367 185440739 THE1C 375 - 0 375 100347 25 1 0 135 1 2 14 24 25 143 0 3 5 1 0 23 chain 20006 chr2 243199373 + 185470889 185471248 THE1D 372 - 2 372 127127 30 15 14 80 9 10 4 1 0 39 36 38 80 4 14 61 chain 29481 chr2 243199373 + 185472663 185472971 AluYa5 310 - 2 310 86708 308 chain 133844 chr2 243199373 + 185478412 185480106 L1PA7 6471 + 4710 6469 27252 520 0 1 123 1 0 188 0 1 4 1 0 41 19 0 3 83 0 30 1 0 77 0 2 483 0 166 120 chain 22318 chr2 243199373 + 185600042 185600329 L1PA7 6471 + 6183 6468 118838 124 2 1 5 0 1 79 4 5 60 3 0 10 chain 22121 chr2 243199373 + 185601101 185601420 L1PA8A 6298 + 5954 6291 119698 147 15 31 32 4 5 20 2 3 99 chain 6558 chr2 243199373 + 185611976 185612048 LTR12C 1709 + 1293 1365 180794 72 chain 26354 chr2 243199373 + 185624358 185624728 LTR7 482 + 0 467 98593 22 4 11 68 15 14 17 0 51 47 0 31 13 0 9 24 0 1 4 1 0 155 chain 12694 chr2 243199373 + 185624759 185624944 LTR7 482 - 297 482 149466 26 1 2 42 15 14 101 chain 31392 chr2 243199373 + 185630026 185630495 LTR2 463 + 0 463 81828 55 0 3 98 1 0 84 4 0 59 10 5 56 37 38 65 chain 13372 chr2 243199373 + 185638207 185638517 L1PB1 5432 + 5136 5422 146808 5 0 3 14 5 1 9 2 0 54 1 0 15 2 1 43 1 0 16 1 0 5 23 14 10 12 9 11 1 0 24 1 0 17 17 15 13 1 0 7 chain 53494 chr2 243199373 + 185658321 185659260 L1PB1 5432 - 12 914 56686 16 1 0 13 1 0 11 13 12 14 96 77 40 1 0 16 2 1 39 31 25 10 1 0 11 1 0 21 1 0 5 7 6 288 18 18 171 4 0 69 7 8 31 chain 3553 chr2 243199373 + 185754229 185754270 L1PA8 5853 + 5812 5853 214490 41 chain 14783 chr2 243199373 + 185768067 185768248 Tigger3a 397 + 139 320 141992 181 chain 3056 chr2 243199373 + 185768477 185768559 L1MA10 1535 - 36 107 223889 28 37 26 17 chain 227047 chr2 243199373 + 185812021 185814440 L1HS 6032 - 0 2419 17486 2419 chain 120058 chr2 243199373 + 185814440 185815716 L1HS 6032 + 1809 3085 31008 1276 chain 9011 chr2 243199373 + 185831226 185831323 L1PA3long 6157 + 6060 6157 165538 97 chain 64667 chr2 243199373 + 185837188 185838152 LTR12 884 - 0 884 50712 89 1 2 63 102 0 330 0 22 36 1 2 21 30 24 25 0 2 64 0 2 202 chain 136936 chr2 243199373 + 185838657 185840185 L1PA3long 6157 - 0 1531 26655 123 7 11 1009 1 0 388 chain 44771 chr2 243199373 + 185840185 185840713 L1P1 4361 + 3816 4341 63225 334 1 0 154 2 1 23 2 1 12 chain 5457 chr2 243199373 + 185872222 185872332 L1MCb 1641 + 1441 1543 190444 41 35 27 34 chain 17102 chr2 243199373 + 185889152 185889389 L1PB1 5432 + 4654 4882 135309 89 10 1 138 chain 117574 chr2 243199373 + 185894519 185895855 L1PA4 6152 - 9 1350 31933 121 0 1 713 0 4 502 chain 33015 chr2 243199373 + 185895855 185896231 L1PA4 6152 + 4430 4802 78481 205 3 0 24 1 0 143 chain 26961 chr2 243199373 + 185901302 185901605 AluYb8 318 + 13 314 96406 50 2 0 251 chain 8447 chr2 243199373 + 185909006 185909106 L1PA8A 6298 - 7 107 168583 100 chain 29398 chr2 243199373 + 185918186 185918494 AluYa5 310 - 2 310 87087 308 chain 115212 chr2 243199373 + 185922433 185923757 L1PA5 6144 - 6 1331 32710 560 7 8 757 chain 96490 chr2 243199373 + 185923762 185924861 L1PA5 6144 + 3751 4853 37690 482 0 1 46 0 2 571 chain 14309 chr2 243199373 + 185953937 185954130 THE1B 368 + 176 368 143537 24 2 0 8 1 2 158 chain 33753 chr2 243199373 + 185954130 185954556 THE1B-int 1605 + 0 428 78019 70 0 1 71 4 5 281 chain 3448 chr2 243199373 + 185975879 185975989 L1MC3 1789 + 1295 1374 216233 16 3 0 9 28 15 32 15 0 7 chain 8875 chr2 243199373 + 185977145 185977245 L1PA5 6144 - 4 104 166260 100 chain 3124 chr2 243199373 + 185977245 185977280 L1P1 4361 + 1147 1182 222463 35 chain 44834 chr2 243199373 + 185983539 185984052 L1PA4 6152 - 1387 1909 63152 385 0 9 128 chain 118802 chr2 243199373 + 185984052 185985437 L1PA4 6152 + 4751 6143 31485 16 9 4 83 0 1 38 0 1 1004 1 0 102 3 4 34 0 1 67 0 9 28 chain 42291 chr2 243199373 + 185988473 185988963 MER9a1 513 - 0 513 66282 246 1 23 41 0 1 202 chain 3309 chr2 243199373 + 185990401 185990448 MADE1 96 - 8 71 218790 29 1 17 17 chain 13235 chr2 243199373 + 185997801 185997954 LTR12C 1709 + 933 1086 147340 153 chain 21331 chr2 243199373 + 186035033 186035355 L1PA16 3655 - 619 949 122752 56 0 1 62 1 0 15 1 0 8 2 11 51 19 20 76 1 0 30 chain 155445 chr2 243199373 + 186055914 186057752 L1PA7 6471 - 10 1850 23927 846 0 1 665 0 1 327 chain 140228 chr2 243199373 + 186057752 186059504 L1PA7 6471 + 2837 4619 26110 325 4 3 319 3 14 25 1 0 65 0 17 229 0 2 238 1 2 368 0 1 174 chain 7748 chr2 243199373 + 186064164 186064265 PABL_A 660 + 492 591 172615 94 2 0 5 chain 24918 chr2 243199373 + 186085956 186086223 AluYg6 310 + 34 301 105234 267 chain 15051 chr2 243199373 + 186136181 186136367 L1PA8A 6298 - 1060 1248 141172 12 1 2 162 0 1 11 chain 68110 chr2 243199373 + 186136372 186137283 L1PA8A 6298 + 5366 6291 49198 123 2 1 90 1 0 42 0 13 329 1 0 29 0 1 122 8 10 61 13 14 90 chain 73866 chr2 243199373 + 186140510 186141371 MER11D 897 + 0 897 46582 433 0 13 128 0 23 300 chain 414193 chr2 243199373 + 186154578 186160807 L1P2 5180 + 2 5170 9693 147 1 0 41 5 4 50 1 0 35 4 5 231 1 0 48 1 0 175 57 55 209 1082 0 262 2 0 83 0 1 1113 0 2 720 1 0 103 6 7 393 1 0 268 2 1 708 10 19 179 0 1 111 1 21 95 1 0 47 1 0 34 chain 14353 chr2 243199373 + 186186882 186187037 L1PA4 6152 + 5966 6121 143368 155 chain 4326 chr2 243199373 + 186189793 186189865 L1MA4 2864 - 54 124 202872 37 10 8 25 chain 46569 chr2 243199373 + 186204423 186204991 L1PA6 6164 - 2 569 61549 8 2 0 130 15 16 413 chain 7641 chr2 243199373 + 186205017 186205105 L1P2 5180 - 5090 5178 173274 88 chain 14372 chr2 243199373 + 186225222 186225387 MLT2A1 477 - 312 477 143297 165 chain 400756 chr2 243199373 + 186225387 186230947 HERVL-int 5654 - 0 5654 10065 29 16 21 170 1 0 4 0 1 78 5 9 24 33 36 605 0 1 456 0 412 70 5 6 170 0 6 499 3 130 50 0 1 387 0 1 104 0 1 73 139 0 218 1 2 1469 0 1 146 319 1 74 0 3 249 16 0 147 chain 8125 chr2 243199373 + 186228181 186228290 HERVL-int 5654 - 1991 2098 170362 102 2 0 5 chain 30352 chr2 243199373 + 186231910 186232313 MLT2A1 477 + 0 403 83774 169 4 1 11 0 1 20 0 3 175 5 4 19 chain 236212 chr2 243199373 + 186242213 186245390 L1PA8 5853 + 2662 5849 16965 144 0 2 10 0 3 61 0 1 71 1 0 61 0 1 198 20 0 179 8 9 18 0 1 96 3 23 165 6 9 71 0 1 15 1 0 41 0 1 84 2 0 83 1 0 111 0 1 68 3 0 24 3 2 99 1 0 164 1 7 343 0 1 180 2 0 43 0 5 36 11 10 370 0 2 6 3 1 6 0 2 73 1 0 46 2 0 69 1 0 9 1 0 51 1 0 22 3 2 78 0 1 7 chain 11248 chr2 243199373 + 186255133 186255265 L1PA4 6152 + 6012 6143 155229 127 1 0 4 chain 18172 chr2 243199373 + 186264991 186265360 THE1B 368 - 0 368 132404 48 15 14 76 57 54 59 7 8 12 0 1 10 19 20 66 chain 35671 chr2 243199373 + 186278122 186278575 L1P3 4156 - 21 471 75299 20 2 1 7 2 0 422 chain 553773 chr2 243199373 + 186284161 186290189 L1PA2 6032 - 2 6030 975 767 0 1 5006 2 1 253 chain 30464 chr2 243199373 + 186293714 186294145 MLT2A1 477 + 15 477 83505 156 3 0 26 0 2 5 4 2 176 7 3 14 3 41 37 chain 17164 chr2 243199373 + 186298813 186299124 Tigger2a 444 + 72 395 135129 19 29 39 48 10 13 70 20 19 115 chain 6478 chr2 243199373 + 186312812 186312891 L1PB4 2604 + 2422 2501 181407 79 chain 5116 chr2 243199373 + 186320163 186320225 MER61B 427 - 365 427 193909 62 chain 9682 chr2 243199373 + 186326670 186326811 L1MA3 4352 + 4155 4288 162185 80 4 0 25 3 0 22 1 0 6 chain 25018 chr2 243199373 + 186365569 186365931 L1PA8 5853 + 5345 5702 104691 219 1 0 43 3 1 62 16 15 4 1 0 13 chain 3567 chr2 243199373 + 186365932 186365973 L1PA8 5853 + 5702 5743 214167 41 chain 7182 chr2 243199373 + 186365980 186366065 L1PA8 5853 + 5761 5847 176195 73 0 1 12 chain 4460 chr2 243199373 + 186367856 186367926 HSMAR2 1300 - 0 79 201239 55 4 13 11 chain 173061 chr2 243199373 + 186380682 186383231 L1PA8 5853 - 8 2392 21702 84 14 13 4 1 0 25 29 32 8 1 0 46 25 24 45 7 6 382 39 0 68 0 1 97 2 0 1186 125 2 40 4 5 191 9 8 117 chain 118992 chr2 243199373 + 186387384 186389288 THE1A-int 1579 + 0 1574 31416 194 0 4 306 1 0 75 0 1 419 34 34 5 2 0 130 9 10 95 332 0 127 3 0 11 0 1 17 5 6 139 chain 19171 chr2 243199373 + 186416936 186417147 L1PA5 6144 + 5933 6144 129611 211 chain 39852 chr2 243199373 + 186449797 186450284 MER9a3 513 - 21 513 69531 58 0 1 173 5 4 72 0 2 70 0 1 91 0 2 18 chain 11249 chr2 243199373 + 186450462 186450592 L1PA5 6144 - 0 130 155226 130 chain 543956 chr2 243199373 + 186450614 186456632 L1PA2 6032 - 2 6029 2220 1025 0 1 4110 1 0 187 0 9 442 1 0 183 1 2 68 chain 176304 chr2 243199373 + 186456635 186458772 L1PA6 6164 - 115 2226 21329 542 0 3 180 12 9 53 0 2 64 44 10 46 0 1 245 0 1 527 0 4 424 chain 32293 chr2 243199373 + 186463997 186464431 MER4A1 472 - 14 472 80375 183 32 54 120 0 2 99 chain 2779 chr2 243199373 + 186467593 186467626 MER1B 344 - 109 143 229029 28 0 1 5 chain 21118 chr2 243199373 + 186477160 186477413 L1PA2 6032 + 5786 6032 123494 80 5 0 7 3 1 158 chain 118177 chr2 243199373 + 186491109 186492407 L1PA3long 6157 - 0 1299 31739 766 0 1 532 chain 36670 chr2 243199373 + 186493924 186494473 MER61-int 3695 - 7 540 74001 39 1 0 4 7 0 54 1 0 140 1 0 42 10 18 44 17 0 42 14 15 62 0 2 71 chain 44555 chr2 243199373 + 186494474 186495045 MER61-int 3695 + 1793 2390 63519 74 6 14 85 0 25 57 6 0 86 1 0 256 chain 9678 chr2 243199373 + 186530877 186531014 Tigger3 1187 - 134 264 162203 75 0 3 14 10 0 38 chain 487033 chr2 243199373 + 186547112 186553207 L1PA6 6164 - 8 6128 7480 138 2 0 6 0 2 206 0 1 469 0 1 10 1 5 54 0 1 414 0 9 26 0 4 145 5 6 293 10 14 50 0 2 602 1 0 15 5 6 487 0 1 11 10 9 229 0 1 605 3 0 477 0 1 258 4 0 788 1 18 186 0 1 38 1 0 117 19 0 39 16 17 238 11 12 6 0 3 99 chain 4169 chr2 243199373 + 186561393 186561455 MLT2B2 565 + 5 68 204989 36 4 5 22 chain 5297 chr2 243199373 + 186575230 186575293 L1PA6 6164 - 2 63 192042 8 2 0 53 chain 7253 chr2 243199373 + 186577507 186577590 L1PA6 6164 - 4 87 175748 83 chain 25011 chr2 243199373 + 186577590 186577883 L1PA6 6164 + 5782 6075 104730 293 chain 5721 chr2 243199373 + 186591139 186591354 MLT1B 390 - 2 287 187914 31 130 200 54 chain 20152 chr2 243199373 + 186591697 186591977 L1PA8 5853 - 7 282 126665 85 2 1 18 3 2 45 18 17 70 2 0 37 chain 14983 chr2 243199373 + 186591977 186592149 L1PA8 5853 + 5383 5555 141374 172 chain 14602 chr2 243199373 + 186592447 186592638 AluSc8 310 + 0 198 142580 10 0 3 118 0 4 9 3 0 5 0 3 46 chain 72346 chr2 243199373 + 186630076 186630853 L1PA2 6032 - 1208 1985 47289 777 chain 110073 chr2 243199373 + 186630853 186632057 L1PA2 6032 + 4827 6031 34198 1039 5 0 7 0 5 153 chain 89882 chr2 243199373 + 186639308 186640285 L1PA2 6032 - 1 982 39689 851 0 4 126 chain 3263 chr2 243199373 + 186682734 186682818 L1MA3 4352 + 4225 4303 219725 5 2 0 4 1 0 26 2 0 11 18 17 15 chain 13024 chr2 243199373 + 186684445 186684611 MER47A 366 + 180 346 148165 166 chain 45406 chr2 243199373 + 186700251 186700855 MER11A 1151 + 0 699 62586 85 0 91 44 7 11 63 4 0 149 0 1 94 0 1 23 6 7 105 10 11 14 chain 5266 chr2 243199373 + 186706113 186706433 L1PA7 6471 - 21 323 28463 128 2 1 5 0 1 15 17 14 8 14 0 78 1 0 52 chain 552023 chr2 243199373 + 186706447 186712483 L1PA2 6032 - 1 6029 1189 66 8 0 1773 1 0 1239 0 1 1380 1 0 1363 0 1 205 chain 23631 chr2 243199373 + 186712483 186713919 L1PA7 6471 - 323 1762 28463 286 0 3 159 0 2 67 1 0 4 0 1 5 1 0 272 2 1 639 chain 94262 chr2 243199373 + 186713919 186715057 L1PA7 6471 + 3452 4588 38248 45 3 0 24 0 1 7 2 1 13 0 5 288 3 0 493 1 0 259 chain 553414 chr2 243199373 + 186729324 186735343 L1PA2 6032 + 0 6021 1015 2118 0 1 833 0 1 3068 chain 37097 chr2 243199373 + 186747428 186747863 L1PA5 6144 - 6 446 73386 46 0 4 91 0 1 298 chain 183158 chr2 243199373 + 186747875 186749971 L1PA5 6144 + 3557 5658 20663 412 0 1 4 1 0 5 5 8 36 0 3 1141 1 2 97 1 0 28 1 0 364 chain 6456 chr2 243199373 + 186784733 186784880 L1MA3 4352 - 0 134 181589 14 18 10 14 10 9 17 2 1 5 1 0 23 2 0 41 chain 47153 chr2 243199373 + 186786432 186786941 L1PA3long 6157 - 5 514 61086 509 chain 12832 chr2 243199373 + 186811182 186811355 MER2 342 + 103 284 148917 32 4 12 137 chain 3087 chr2 243199373 + 186813601 186813660 L1M3 994 + 32 87 223150 6 3 0 23 1 0 14 1 0 4 0 1 7 chain 8379 chr2 243199373 + 186815366 186815462 L1P3 4156 - 4060 4156 168971 96 chain 18147 chr2 243199373 + 186837173 186837393 MSTA-int 1630 + 1403 1623 132467 220 chain 47064 chr2 243199373 + 186840570 186841097 L1P1 4361 - 335 862 61150 527 chain 103246 chr2 243199373 + 186841097 186842255 L1PA3long 6157 + 4983 6149 35939 993 0 8 165 chain 56610 chr2 243199373 + 186847088 186847711 L1PA3long 6157 - 0 631 54776 66 0 9 184 1 0 372 chain 114630 chr2 243199373 + 186853897 186855174 L1PA4 6152 + 4760 6047 32913 120 0 13 408 2 0 254 1 0 492 chain 45648 chr2 243199373 + 186872664 186873177 MER9a2 513 + 0 513 62356 513 chain 276858 chr2 243199373 + 186874352 186878145 L1PA10 4194 + 313 4082 14827 22 2 0 18 1 0 10 1 0 11 5 0 6 1 0 15 10 0 8 1 0 41 1 2 38 3 0 194 3 4 446 1 0 323 14 0 433 7 11 297 19 20 155 0 3 240 87 84 9 0 1 28 1 4 223 2 0 54 0 1 32 6 7 203 3 4 67 0 2 632 4 5 116 chain 121849 chr2 243199373 + 186890119 186891464 L1PA3long 6157 + 4807 6156 30429 497 0 4 848 chain 5917 chr2 243199373 + 186899281 186899381 MER5B 177 + 6 105 186024 34 18 17 48 chain 23866 chr2 243199373 + 186931848 186932115 L1PA4 6152 + 5885 6151 111103 7 1 0 259 chain 99941 chr2 243199373 + 186938064 186939282 L1PA8 5853 + 4639 5853 36797 260 1 0 109 0 5 464 1 0 87 1 0 44 2 0 71 1 0 9 7 0 6 0 6 40 2 1 19 1 0 93 chain 9860 chr2 243199373 + 186939813 186939965 L1MB8 1703 - 115 268 161286 72 3 4 29 1 0 5 1 2 41 chain 51738 chr2 243199373 + 186942929 186943528 L1PA5 6144 + 5544 6144 57795 440 0 1 159 chain 125154 chr2 243199373 + 186951487 186952984 L1PA7 6471 + 4955 6466 29343 671 0 3 71 0 2 694 0 9 61 chain 137118 chr2 243199373 + 186955488 186957068 L1PA3long 6157 - 0 1545 26616 148 1 5 215 38 0 404 2 1 772 chain 16841 chr2 243199373 + 186963081 186963335 Tigger1 2417 + 1778 2045 136014 11 5 9 19 3 7 144 0 3 51 8 10 13 chain 58617 chr2 243199373 + 186981153 186981899 LTR12 884 - 0 884 53631 497 0 179 140 41 0 68 chain 1564 chr2 243199373 + 186981790 186981831 LTR12 884 - 577 643 190812 27 1 26 13 chain 10841 chr2 243199373 + 186986794 186986982 L1MA3 4352 + 4106 4282 156825 7 3 0 85 0 4 12 10 3 18 4 0 25 2 0 22 chain 22832 chr2 243199373 + 186992885 186993175 L1PA5 6144 - 9 286 116434 151 10 3 116 6 0 7 chain 319543 chr2 243199373 + 187009011 187013118 L1PA8A 6298 + 2098 6270 12614 403 16 36 103 0 2 118 0 1 88 1 2 4 1 0 51 3 4 537 1 2 5 0 2 120 0 1 118 19 16 158 3 2 349 0 3 18 0 42 343 9 1 175 0 1 659 3 2 25 2 1 183 7 1 337 7 18 241 chain 153913 chr2 243199373 + 187018054 187019725 SVA_F 1814 - 0 1814 24101 15 0 1 628 1 0 12 0 127 68 0 15 765 0 1 182 chain 22074 chr2 243199373 + 187022411 187022760 L1PA14 3548 + 1112 1449 119908 227 6 5 13 44 33 59 chain 9866 chr2 243199373 + 187026880 187027158 L1PA14 3548 + 3170 3433 161255 17 0 1 13 4 0 21 7 6 68 76 70 11 5 9 6 7 0 4 1 0 19 1 0 18 chain 27509 chr2 243199373 + 187032872 187033215 L1PA8 5853 + 5411 5748 94628 110 1 0 43 1 0 44 2 0 70 2 1 12 1 0 57 chain 10817 chr2 243199373 + 187037844 187038171 LTR14B 630 - 17 395 156908 19 83 82 50 52 62 30 0 10 33 21 53 39 chain 28121 chr2 243199373 + 187038599 187038993 MLT2A1 477 + 4 399 92569 138 0 1 18 8 12 151 1 0 17 21 22 22 4 0 14 chain 16055 chr2 243199373 + 187050549 187050748 L1PA5 6144 + 5948 6144 138200 41 1 0 31 2 0 124 chain 9629 chr2 243199373 + 187055450 187055589 LTR45B 484 + 8 154 162450 56 14 21 69 chain 3790 chr2 243199373 + 187066975 187067024 L1M1 2793 + 2631 2679 210517 42 1 0 6 chain 35436 chr2 243199373 + 187075565 187076097 MLT2A2 560 - 0 560 75634 8 0 4 29 7 11 41 8 10 42 1 12 169 45 51 33 0 1 149 chain 24725 chr2 243199373 + 187079662 187080029 THE1C 375 - 0 375 106293 25 1 0 127 8 11 14 11 12 46 1 5 26 1 2 107 chain 535218 chr2 243199373 + 187095050 187101189 L1PA4 6152 + 1 6151 3568 314 2 1 144 6 0 120 1 0 727 0 1 101 0 1 43 0 4 1287 0 10 403 0 2 684 7 6 300 0 3 1076 1 0 923 chain 29935 chr2 243199373 + 187116812 187117151 L1P1 4361 - 636 974 84450 49 1 0 289 chain 38562 chr2 243199373 + 187117151 187117583 L1PA4 6152 + 4730 5162 71353 432 chain 85521 chr2 243199373 + 187117587 187118557 L1PA4 6152 + 5162 6143 41337 136 0 4 696 3 10 135 chain 14662 chr2 243199373 + 187125904 187126082 Tigger1 2417 + 49 227 142382 178 chain 131420 chr2 243199373 + 187130040 187131677 L1PA7 6471 - 7 1648 27749 5 3 0 150 14 15 559 0 1 19 0 3 5 1 0 91 1 0 10 0 4 446 4 5 201 1 0 127 chain 139733 chr2 243199373 + 187131677 187133347 L1PA7 6471 + 3134 4815 26183 338 4 9 22 1 0 68 1 2 644 0 2 60 0 3 348 0 1 184 chain 14611 chr2 243199373 + 187145039 187145405 L1PREC2 3366 - 318 644 142552 38 6 4 34 47 31 19 7 5 11 52 39 14 7 3 44 1 0 54 2 0 30 chain 51218 chr2 243199373 + 187171171 187171910 MER4D1 891 + 0 753 58176 21 8 6 90 6 7 75 1 14 153 6 2 49 1 0 13 1 0 5 2 0 104 6 9 49 0 7 149 chain 3786 chr2 243199373 + 187177101 187177717 L1MA1 4479 + 236 847 48006 44 2 0 65 23 22 45 14 15 37 21 20 122 9 11 65 1 0 97 13 5 9 1 5 20 10 11 18 chain 506747 chr2 243199373 + 187177802 187183668 L1PA4 6152 + 83 6143 6419 15 0 217 146 7 8 763 0 1 713 1 0 605 9 0 951 0 4 103 0 2 668 24 0 1025 0 4 578 1 0 123 1 0 53 0 1 80 chain 74114 chr2 243199373 + 187184753 187185601 L1PA5 6144 + 5273 6142 46451 110 1 0 41 0 18 41 0 3 324 1 2 330 chain 6177 chr2 243199373 + 187187619 187188624 L1MA1 4479 + 3212 4185 48006 39 1 0 11 10 5 110 23 19 69 4 6 42 2 0 86 0 1 99 0 2 9 1 0 29 2 0 16 1 2 45 4 2 22 1 0 19 2 0 14 5 4 58 6 7 19 1 0 5 3 0 121 10 9 25 2 0 32 44 33 13 chain 26469 chr2 243199373 + 187235213 187235509 L1PA4 6152 + 4341 4637 98170 296 chain 136318 chr2 243199373 + 187235509 187237019 L1PA4 6152 + 4643 6152 26779 729 1 0 780 chain 78993 chr2 243199373 + 187239861 187240756 MER11D 897 + 0 897 44064 287 2 1 489 0 1 60 12 14 45 chain 282769 chr2 243199373 + 187260496 187263670 L1PA5 6144 - 14 3197 14487 133 0 1 721 0 4 989 0 2 616 0 2 715 chain 115665 chr2 243199373 + 187266444 187267695 L1PA2 6032 - 195 1446 32570 1251 chain 16942 chr2 243199373 + 187267695 187267886 L1PA2 6032 + 5837 6028 135744 191 chain 399438 chr2 243199373 + 187274734 187279681 HERVL-int 5654 - 0 5654 10120 139 1 0 265 0 21 284 0 2 185 6 4 115 0 3 407 0 8 591 0 1 339 10 664 358 0 10 179 7 16 22 0 2 175 17 18 130 0 1 392 0 1 184 0 7 13 1 0 406 14 3 60 1 0 31 0 1 348 24 25 102 1 2 140 chain 18525 chr2 243199373 + 187291893 187292097 L1PA5 6144 + 5931 6135 131436 204 chain 24417 chr2 243199373 + 187295513 187295831 THE1C 375 - 56 375 107988 64 1 0 51 0 3 157 1 0 44 chain 13541 chr2 243199373 + 187304885 187305042 L1PA4 6152 + 5990 6152 146208 151 0 5 6 chain 169605 chr2 243199373 + 187336951 187338935 SVA_D 2077 + 8 2075 22104 45 0 2 853 0 133 52 2 0 90 98 0 169 0 49 44 1 0 630 chain 6703 chr2 243199373 + 187337993 187338091 SVA_D 2077 + 956 1056 78061 78 2 4 18 chain 206994 chr2 243199373 + 187340223 187342497 L1PA3long 6157 + 3881 6157 18717 783 2 1 645 0 4 647 1 0 196 chain 25287 chr2 243199373 + 187359407 187359699 L1PA5 6144 + 5844 6139 103282 147 4 7 141 chain 29300 chr2 243199373 + 187379415 187379727 AluYb8 318 + 0 312 87570 312 chain 11120 chr2 243199373 + 187385642 187385779 LTR5_Hs 974 + 831 974 155735 60 0 6 77 chain 4146 chr2 243199373 + 187385779 187385883 HERVK-int 6823 + 0 100 205305 5 1 0 12 4 2 19 13 12 12 1 0 10 1 2 26 chain 23150 chr2 243199373 + 187385885 187386165 HERVK-int 6823 + 5433 5710 114894 81 1 0 14 1 0 108 1 0 74 chain 64710 chr2 243199373 + 187386255 187387099 LTR5_Hs 974 + 0 884 50694 84 15 18 67 5 10 279 1 33 18 1 0 138 9 10 227 chain 65697 chr2 243199373 + 187428404 187429383 L1MA3 4352 + 46 1033 50250 49 1 12 49 1 0 4 15 7 34 1 0 136 0 1 23 6 7 124 9 13 116 7 8 38 0 1 105 2 0 85 6 5 11 1 0 8 9 12 139 chain 5309 chr2 243199373 + 187439890 187440087 MER53 195 - 0 195 191922 20 119 117 58 chain 17650 chr2 243199373 + 187483942 187484313 L1MA5A 2387 + 2054 2372 133841 54 1 0 47 2 0 28 2 0 30 0 2 17 24 0 11 1 0 4 0 1 42 73 51 21 4 0 10 chain 26368 chr2 243199373 + 187517658 187517939 AluYb8 318 - 5 286 98542 281 chain 19221 chr2 243199373 + 187546897 187547275 THE1D 372 - 0 370 129471 10 2 3 17 1 0 84 0 2 31 1 0 22 21 23 22 0 1 25 6 10 31 52 35 24 1 0 15 0 2 13 chain 2893 chr2 243199373 + 187598950 187598985 MER52A 1651 - 817 853 227159 18 0 1 17 chain 5550 chr2 243199373 + 187635519 187635585 MER47C 97 - 31 97 189567 66 chain 23090 chr2 243199373 + 187638129 187639034 L1PB1 5432 + 4885 5412 115198 110 1 2 4 1 0 54 18 22 17 370 14 6 3 0 24 1 0 6 1 0 12 20 14 49 1 0 12 6 5 30 47 42 18 8 6 14 15 12 12 1 0 22 1 0 12 1 0 8 chain 9274 chr2 243199373 + 187646089 187646213 MER30 238 + 117 238 164191 6 2 0 16 2 0 70 0 1 28 chain 316880 chr2 243199373 + 187650999 187655599 L1PA11 4918 + 9 4567 12730 7 0 2 24 2 0 36 2 0 6 2 1 30 1 0 13 2 0 52 1 0 33 2 0 5 2 1 231 2 6 366 0 2 26 25 9 177 0 3 5 5 6 185 6 8 54 1 3 47 0 1 66 0 1 10 4 5 170 0 4 88 12 12 23 0 3 83 4 1 303 0 1 25 0 3 55 2 3 4 1 0 24 1 0 5 0 4 4 6 0 5 0 9 23 0 3 165 1 17 75 0 1 69 75 3 93 0 3 42 0 1 16 0 1 182 0 21 19 0 1 37 0 1 29 9 11 196 4 1 68 2 1 178 26 0 8 0 4 278 0 12 12 0 1 252 0 1 146 7 6 58 16 20 11 0 2 4 0 1 26 6 7 23 22 19 67 2 0 13 2 1 14 27 18 10 14 10 14 1 0 13 chain 21542 chr2 243199373 + 187656781 187657041 AluSg 306 + 11 271 121995 130 3 0 6 0 3 121 chain 499867 chr2 243199373 + 187657448 187663826 L1PA7 6471 + 5 6457 6846 236 0 8 159 24 28 527 1 4 161 7 21 60 1 0 38 0 2 29 70 68 283 0 4 485 0 1 513 0 2 79 0 8 6 0 1 17 1 4 98 0 3 252 0 2 181 2 0 211 11 11 86 2 1 242 1 0 196 0 1 75 3 4 245 0 2 315 0 4 181 5 6 411 0 1 150 0 1 406 1 3 173 0 2 92 0 9 23 0 1 222 0 1 97 chain 486930 chr2 243199373 + 187676511 187682994 L1PA7 6471 + 16 6464 7487 146 11 10 230 24 5 273 2 11 44 5 4 42 3 1 40 14 235 151 6 10 63 1 2 110 1 0 253 1 0 278 1 2 234 0 5 267 0 1 52 1 0 35 0 4 115 0 2 64 0 3 181 0 4 295 6 0 9 6 8 107 4 5 203 0 1 7 6 3 230 0 26 26 0 4 9 1 2 212 16 15 362 1 0 143 0 1 46 1 3 64 0 4 54 0 1 129 0 1 176 2 6 232 0 1 92 0 1 149 0 11 93 0 4 49 319 0 23 0 2 365 0 1 239 7 4 81 5 6 66 chain 17222 chr2 243199373 + 187690264 187690482 L1PA11 4918 + 3902 4120 134997 218 chain 27786 chr2 243199373 + 187690496 187690955 L1PA11 4918 + 4144 4578 93749 123 1 5 59 16 4 60 1 0 79 2 0 12 3 2 20 4 0 9 31 22 5 0 3 7 1 0 13 2 0 11 chain 48646 chr2 243199373 + 187696228 187696762 L1PA4 6152 + 5617 6152 59993 384 0 1 150 chain 6590 chr2 243199373 + 187739373 187739501 L1MB1 2102 - 36 157 180538 28 37 30 63 chain 513740 chr2 243199373 + 187760812 187767002 L1PA6 6164 - 4 6164 5807 825 2 1 24 0 5 270 6 5 1840 0 1 860 31 0 471 0 1 243 0 1 524 0 3 198 0 1 76 1 18 105 2 1 120 1 0 47 0 2 79 20 0 23 24 21 156 0 2 58 24 19 160 chain 71452 chr2 243199373 + 187787301 187788079 L1PA2 6032 + 5255 6032 47721 627 1 0 150 chain 22667 chr2 243199373 + 187812248 187812543 MER57A1 433 - 0 297 117238 57 12 13 80 0 1 146 chain 100088 chr2 243199373 + 187817447 187818523 L1PA2 6032 - 0 1076 36751 1076 chain 23339 chr2 243199373 + 187822262 187822553 AluSp 311 + 1 295 113985 91 0 4 185 2 1 13 chain 13665 chr2 243199373 + 187826506 187826664 L1PA3long 6157 - 1 160 145726 141 0 1 17 chain 250752 chr2 243199373 + 187850784 187854243 L1PA7 6471 - 7 3230 16197 584 0 9 180 0 72 353 7 15 266 1 0 38 4 0 215 1 6 514 0 2 206 3 0 244 1 4 10 0 1 39 327 0 82 2 1 75 0 5 46 6 2 4 1 0 250 chain 138668 chr2 243199373 + 187854262 187856024 L1P2 5180 + 1353 3114 26369 25 0 2 99 1 0 81 0 1 659 20 13 25 4 6 54 0 1 4 2 0 5 0 2 245 0 4 257 3 0 5 0 4 17 5 0 148 0 1 103 chain 93429 chr2 243199373 + 187930986 187932266 L1PREC2 3366 - 502 1789 38526 11 6 0 3 1 0 44 1 0 54 2 0 65 1 5 90 1 2 106 0 1 38 1 10 370 1 2 93 1 0 206 2 0 47 9 14 12 9 8 106 chain 15419 chr2 243199373 + 187932269 187932528 L1PA14 3548 + 3221 3465 140138 110 1 0 11 5 1 36 4 2 12 1 0 3 1 0 19 1 0 6 0 1 36 6 0 7 chain 15346 chr2 243199373 + 187947117 187947304 L1PA7 6471 + 6280 6468 140352 109 0 1 78 chain 96070 chr2 243199373 + 187963441 187964543 L1PA5 6144 - 1 1131 37802 153 0 1 183 0 1 256 0 1 284 0 25 226 chain 12950 chr2 243199373 + 187996490 187996635 L1PA7 6471 + 6039 6184 148428 145 chain 23104 chr2 243199373 + 187996648 187996919 L1PA7 6471 + 6192 6461 115119 260 2 0 9 chain 32321 chr2 243199373 + 187999902 188000331 L1PA7 6471 - 21 446 80327 89 9 9 52 1 2 106 1 0 4 8 4 159 chain 53646 chr2 243199373 + 188038108 188039036 MER52-int 3354 - 85 977 56590 24 1 0 12 3 2 9 1 0 6 1 0 27 24 18 9 1 0 31 13 11 13 1 0 35 1 0 4 2 0 6 18 14 17 6 5 9 1 0 32 3 1 42 1 0 13 3 1 32 1 0 7 7 6 4 1 0 39 22 20 40 7 6 63 1 0 284 10 9 41 chain 3229 chr2 243199373 + 188043017 188043051 MLT2A1 477 - 0 34 220447 34 chain 392800 chr2 243199373 + 188043483 188048882 HERVL-int 5654 - 4 5654 10370 737 32 35 250 5 0 7 0 1 22 0 1 162 12 13 266 7 9 682 0 3 259 3 13 4 0 1 232 375 0 390 15 608 232 5 3 280 0 1 216 0 21 355 0 1 4 1 0 41 0 1 200 2 4 5 2 0 255 20 14 204 0 1 117 chain 31348 chr2 243199373 + 188048882 188049340 MLT2A1 477 - 0 477 81900 6 0 4 24 8 6 17 33 51 165 0 1 23 0 1 9 4 1 169 chain 88851 chr2 243199373 + 188050862 188051853 L1P1 4361 - 353 1344 40060 991 chain 15821 chr2 243199373 + 188051853 188052028 L1PA5 6144 + 5956 6131 138888 175 chain 262424 chr2 243199373 + 188065627 188069113 HERVL-int 5654 - 0 3457 15563 227 4 0 82 8 9 102 11 5 133 0 1 192 1 4 218 4 0 116 0 12 546 11 6 35 0 2 27 9 8 4 0 1 26 0 1 449 7 0 145 19 4 32 17 9 1061 chain 10662 chr2 243199373 + 188069113 188069238 HERVL-int 5654 - 5107 5232 157555 125 chain 20918 chr2 243199373 + 188069321 188069583 HERVL-int 5654 - 5310 5572 124221 262 chain 14668 chr2 243199373 + 188085061 188085236 L1P2 5180 + 1011 1188 142366 129 0 2 46 chain 34631 chr2 243199373 + 188085373 188085783 L1P2 5180 - 3216 3624 76714 16 1 0 303 3 2 87 chain 19885 chr2 243199373 + 188087791 188088164 THE1C 375 + 0 375 127532 15 2 0 32 10 7 14 45 46 27 8 12 85 10 13 98 1 0 26 chain 11884 chr2 243199373 + 188090053 188090212 THE1B 368 - 194 368 152681 119 5 20 35 chain 16375 chr2 243199373 + 188090212 188090409 THE1B-int 1605 - 0 199 137273 99 0 2 98 chain 117457 chr2 243199373 + 188090475 188091991 HERVL-int 5654 + 1895 3417 31978 84 1 0 4 0 1 162 2 0 350 0 3 49 3 1 39 1 2 190 33 37 70 0 1 360 0 1 168 chain 86848 chr2 243199373 + 188099427 188100382 L1PA3long 6157 - 15 972 40838 156 0 2 799 chain 36210 chr2 243199373 + 188148482 188148938 HERVL-int 5654 - 4307 4769 74616 122 0 1 7 0 1 34 1 2 147 0 1 91 0 2 54 chain 14484 chr2 243199373 + 188148941 188149113 HERVL-int 5654 - 4773 4945 142933 172 chain 26037 chr2 243199373 + 188149117 188149454 HERVL-int 5654 - 4951 5308 99877 167 0 3 7 0 11 97 0 6 66 chain 28205 chr2 243199373 + 188149454 188149796 HERVL-int 5654 - 5311 5654 92290 200 0 1 142 chain 67129 chr2 243199373 + 188152388 188153117 L1PA3long 6157 - 5 734 49599 729 chain 26955 chr2 243199373 + 188165884 188166195 L1PA5 6144 + 5834 6144 96427 292 1 0 18 chain 26050 chr2 243199373 + 188171801 188172163 THE1B 368 + 2 368 99824 167 1 0 21 7 10 9 1 5 18 1 0 10 1 0 109 0 1 4 1 0 12 chain 7392 chr2 243199373 + 188188898 188188997 MLT1A1 405 - 306 405 174819 62 0 1 13 1 0 23 chain 6383 chr2 243199373 + 188207526 188207662 LTR37A 408 + 266 387 182165 18 6 7 49 2 0 5 1 3 31 16 0 8 chain 28501 chr2 243199373 + 188215730 188216031 AluYk11 308 + 0 301 91181 301 chain 150731 chr2 243199373 + 188220398 188222294 L1PA8 5853 + 3863 5753 24512 44 0 2 320 5 6 135 1 0 18 5 0 494 0 4 123 2 0 393 2 1 117 0 1 39 7 6 38 6 4 70 2 1 14 1 0 6 2 3 41 1 0 10 chain 6294 chr2 243199373 + 188222300 188222366 L1PA3long 6157 - 163 229 182856 66 chain 14892 chr2 243199373 + 188222366 188222532 L1PA3long 6157 + 5991 6157 141654 166 chain 8634 chr2 243199373 + 188222565 188222665 L1PA7 6471 + 6358 6458 167568 100 chain 4381 chr2 243199373 + 188230640 188230688 L1MA5A 2387 + 2230 2278 202188 48 chain 29648 chr2 243199373 + 188230688 188230996 AluYb8 318 + 0 308 86076 308 chain 29648 chr2 243199373 + 188239717 188240025 AluYb8 318 + 0 308 86075 308 chain 20090 chr2 243199373 + 188251435 188251792 THE1B 368 + 0 368 126858 15 2 0 25 0 5 86 38 37 30 36 45 125 chain 6502 chr2 243199373 + 188264430 188264638 L1MA5 2750 + 2537 2726 181218 27 1 0 14 11 11 33 9 15 12 1 0 12 65 42 23 chain 10166 chr2 243199373 + 188357276 188357400 THE1-int 844 + 705 826 159772 67 2 0 34 1 0 20 chain 312650 chr2 243199373 + 188373852 188385332 L1P3 4156 - 21 4156 12907 19 1 0 9 2 0 107 2 0 351 1 3 107 4 5 34 0 1 48 7350 0 295 0 4 391 0 1 132 0 1 327 5 6 159 0 1 368 4 1 198 24 23 56 0 3 77 0 1 22 0 3 185 5 0 126 0 1 295 1 0 261 1 0 74 0 1 30 0 1 41 5 6 41 1 0 69 1 0 251 chain 34916 chr2 243199373 + 188375216 188375678 LTR2 463 + 0 463 76316 368 43 44 51 chain 251144 chr2 243199373 + 188377481 188380589 Harlequin-int 5206 + 125 3382 16165 18 3 0 6 7 3 142 3 1 188 4 0 134 1 0 65 1 0 104 0 1 35 2 135 20 0 14 88 28 45 145 0 1 455 0 1 847 12 9 800 chain 33996 chr2 243199373 + 188381342 188381806 LTR2 463 + 0 463 77621 38 0 1 329 28 30 9 1 0 24 3 0 32 chain 520125 chr2 243199373 + 188397009 188403469 L1PA7 6471 + 0 6465 5143 355 17 18 39 1 0 40 4 6 220 0 1 5 1 0 8 19 34 124 0 1 256 0 1 142 6 0 8 0 6 208 0 1 286 2 0 760 0 2 120 20 1 53 1 3 5 2 0 393 0 4 391 0 2 507 5 4 938 1 2 10 4 0 147 0 1 4 1 0 247 0 1 267 0 3 689 3 0 5 1 3 137 1 0 7 chain 162352 chr2 243199373 + 188420652 188422627 SVA_D 2077 + 58 2062 23016 119 0 2 724 0 184 111 89 0 189 75 1 13 4 0 328 0 10 323 chain 2932 chr2 243199373 + 188421642 188421695 SVA_D 2077 + 967 1020 76648 53 chain 4149 chr2 243199373 + 188421884 188421959 SVA_D 2077 + 1084 1159 76648 75 chain 39308 chr2 243199373 + 188422667 188423114 LTR7 482 - 0 482 70309 203 0 31 23 0 2 101 0 1 90 0 1 30 chain 280276 chr2 243199373 + 188426904 188430422 HERVH-int 3825 - 0 3825 14629 487 8 218 39 9 11 995 1 0 51 0 13 295 4 31 267 0 1 194 15 0 422 0 4 18 1 0 49 41 0 5 43 0 28 1 0 41 1 0 25 89 0 12 1 0 15 28 0 14 4 275 315 chain 1775 chr2 243199373 + 188429768 188429800 HERVH-int 3825 - 3123 3155 181751 32 chain 40431 chr2 243199373 + 188430424 188430875 LTR7 482 - 0 482 68691 187 0 31 264 chain 72955 chr2 243199373 + 188436598 188437482 L1PA7 6471 - 6 892 47043 662 0 1 26 0 4 62 2 0 89 1 0 42 chain 96056 chr2 243199373 + 188462471 188463516 L1PA3long 6157 - 0 1045 37803 761 1 0 95 0 1 188 chain 4162 chr2 243199373 + 188489055 188489105 MADE1 96 + 46 96 205062 50 chain 149794 chr2 243199373 + 188501014 188502869 SVA_A 1864 - 3 1846 24648 10 3 1 568 2 0 90 0 2 5 0 1 39 1 0 10 2 0 74 2 0 37 2 0 139 1 0 44 0 76 149 79 0 598 chain 4915 chr2 243199373 + 188502192 188502269 SVA_A 1864 - 1137 1174 58888 4 40 0 33 chain 2916 chr2 243199373 + 188502196 188502236 SVA_A 1864 - 1407 1447 204196 23 1 0 4 0 1 12 chain 263161 chr2 243199373 + 188520261 188523919 MER61-int 3695 + 30 3695 15531 16 1 0 26 1 2 25 1 0 101 39 0 71 7 6 49 6 23 62 15 1 55 3 0 13 0 1 161 1 0 69 1 6 136 2 0 73 0 1 107 1 2 70 6 4 12 0 5 99 0 3 123 0 48 271 0 1 191 25 17 119 1 0 185 1 4 53 1 0 369 7 6 7 0 2 140 1 0 66 0 1 21 11 10 37 1 0 251 2 1 185 21 10 158 1 5 79 0 1 16 0 9 28 7 1 51 chain 114992 chr2 243199373 + 188524433 188525689 L1PA3long 6157 - 9 1269 32797 667 0 1 218 0 3 371 chain 5697 chr2 243199373 + 188525689 188525750 L1P1 4361 + 4090 4151 187252 61 chain 3043 chr2 243199373 + 188525811 188525844 L1P1 4361 + 4118 4151 224135 33 chain 5499 chr2 243199373 + 188530878 188530945 MER41A 554 + 399 466 190049 67 chain 37804 chr2 243199373 + 188535209 188535657 LTR7 482 - 0 482 72411 49 12 14 122 0 31 250 0 1 15 chain 291071 chr2 243199373 + 188536909 188540543 HERVH-int 3825 - 0 3825 13952 225 0 2 260 11 221 36 16 18 127 0 1 87 1 0 4 0 1 6 0 4 535 0 1 270 4 14 263 0 1 30 7 34 26 0 1 204 0 2 10 0 1 312 0 4 343 0 3 14 0 2 12 7 8 44 2 1 12 88 0 29 21 0 22 0 31 24 1 0 10 1 0 38 5 0 287 0 5 240 chain 40154 chr2 243199373 + 188540545 188540996 LTR7 482 - 0 482 69103 187 0 31 264 chain 118636 chr2 243199373 + 188597605 188598934 L1PA5 6144 - 1026 2361 31562 72 0 1 385 0 3 376 0 2 496 chain 91346 chr2 243199373 + 188598934 188599977 L1PA5 6144 + 5110 6142 39124 790 12 1 241 chain 4907 chr2 243199373 + 188610516 188610569 MER52A 1651 - 426 479 196199 53 chain 89618 chr2 243199373 + 188611684 188612771 L1PA6 6164 + 5070 6162 39774 286 0 1 180 3 5 340 1 0 102 0 1 5 4 6 166 chain 24081 chr2 243199373 + 188616677 188616991 THE1A 353 - 29 342 109866 145 2 1 7 0 1 59 1 0 100 chain 28078 chr2 243199373 + 188618416 188618764 THE1A 353 - 6 353 92721 237 1 0 110 chain 14977 chr2 243199373 + 188648894 188649244 L1PB1 5432 - 19 325 141388 9 1 0 12 2 1 21 1 0 24 2 0 8 14 11 18 14 5 8 3 0 15 9 0 43 3 2 15 2 1 53 2 0 9 6 2 10 1 0 12 6 5 15 5 0 7 chain 28776 chr2 243199373 + 188649642 188649947 AluYa5 310 - 6 310 89994 178 1 0 126 chain 5313 chr2 243199373 + 188675835 188675901 MER41B 635 + 481 548 191899 27 0 1 39 chain 100966 chr2 243199373 + 188676369 188677846 L1PB1 5432 + 3981 5419 36519 140 0 10 113 0 1 383 3 0 184 15 4 284 21 17 21 1 0 7 2 1 10 23 17 47 18 16 41 7 6 12 26 13 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 15 chain 11223 chr2 243199373 + 188697775 188697906 L1PA7 6471 + 6339 6470 155334 131 chain 2979 chr2 243199373 + 188707194 188707228 L1PA16 3655 + 3382 3416 225475 34 chain 12699 chr2 243199373 + 188729040 188729207 MER34C2 569 - 28 200 149451 21 0 4 41 2 3 103 chain 5858 chr2 243199373 + 188735068 188735164 MER39 703 - 63 156 186603 33 3 4 41 4 0 15 chain 23481 chr2 243199373 + 188740916 188741190 AluY 311 + 20 289 113212 12 1 0 19 4 0 238 chain 3390 chr2 243199373 + 188745468 188745511 MER39 703 + 0 42 217283 13 1 0 29 chain 23575 chr2 243199373 + 188760506 188760789 AluSp 311 + 9 292 112710 283 chain 15421 chr2 243199373 + 188765826 188766024 L1PA11 4918 + 2509 2710 140127 123 0 3 75 chain 12808 chr2 243199373 + 188769874 188770076 AluSz6 309 + 81 296 149024 10 1 0 3 4 0 141 8 30 15 0 1 9 5 0 6 chain 2914 chr2 243199373 + 188772580 188772617 L1MC4 1079 + 841 878 226799 37 chain 23166 chr2 243199373 + 188775363 188775611 L1PA2 6032 - 7 255 114832 248 chain 9274 chr2 243199373 + 188813070 188813250 MER66B 489 + 267 447 164195 32 17 24 15 28 21 88 chain 318608 chr2 243199373 + 188815030 188820835 L1PA7 6471 + 2434 6465 12646 260 5 1 218 0 1 27 0 1 135 0 1 400 1 2 49 5 1 53 0 3 80 1512 0 122 0 3 22 0 4 281 268 0 31 10 2 62 0 4 34 10 12 234 0 3 534 0 4 14 5 1 162 0 4 155 2 1 143 1 0 4 12 13 97 0 1 286 0 4 395 26 25 130 8 0 12 chain 4374 chr2 243199373 + 188879418 188879485 MLT1B-int 1170 - 1089 1152 202279 18 2 0 6 3 1 38 chain 26628 chr2 243199373 + 188883610 188883993 THE1D-int 1627 + 42 371 97564 70 54 0 259 chain 19651 chr2 243199373 + 188885485 188885823 THE1D 372 + 7 352 128245 42 9 0 84 0 1 31 60 75 112 chain 30091 chr2 243199373 + 188895415 188895813 LOR1b 457 - 0 396 84516 313 19 18 21 1 0 44 chain 27145 chr2 243199373 + 188898230 188898628 LTR7 482 + 6 469 95775 61 10 48 104 13 46 20 13 7 177 chain 275250 chr2 243199373 + 188898659 188902196 HERVH-int 3825 + 15 3825 14912 37 0 3 126 0 2 99 3 0 51 1 0 31 15 16 95 13 15 23 1 266 447 15 0 149 1 0 57 11 1 37 1 0 173 8 7 116 0 1 23 27 62 220 24 29 71 0 1 123 2 1 111 0 1 5 5 4 394 0 1 157 21 0 438 27 28 53 0 11 281 1 0 44 chain 39401 chr2 243199373 + 188904896 188905370 LTR2 463 + 3 463 70161 204 1 0 101 14 0 72 0 1 82 chain 32795 chr2 243199373 + 188908115 188908551 L1PA8A 6298 + 5830 6269 79540 176 12 13 106 5 6 52 0 1 85 chain 23603 chr2 243199373 + 188908974 188909281 MLT2A2 560 + 0 310 112570 88 0 1 31 0 1 118 5 6 65 chain 7018 chr2 243199373 + 188931434 188931529 L1MA7 2200 + 1767 1861 177333 62 1 0 32 chain 27185 chr2 243199373 + 188985057 188985361 AluYf4 310 - 5 310 95644 251 0 1 53 chain 543171 chr2 243199373 + 188988288 188994260 L1PA3long 6157 + 53 6156 2317 99 0 1 102 0 1 521 1 129 1421 0 1 3828 chain 7481 chr2 243199373 + 189019427 189019518 L1PA2 6032 - 4 89 174263 10 6 0 75 chain 66765 chr2 243199373 + 189029451 189030546 HERVH-int 3825 - 2395 3745 49749 204 15 0 51 1 4 21 4 0 6 0 4 125 1 2 235 1 0 9 0 2 10 82 311 26 25 24 62 2 1 61 55 91 25 0 2 74 chain 27310 chr2 243199373 + 189033419 189033826 LTR7 482 - 5 482 95242 185 0 31 36 0 1 39 51 0 21 6 95 69 chain 276592 chr2 243199373 + 189035623 189039010 HERVH-int 3825 - 0 3825 14839 208 2 1 82 0 3 82 39 39 72 8 218 184 0 1 493 3 0 5 4 7 426 0 4 233 0 1 920 0 10 57 1 0 14 0 120 14 1 90 11 1 0 38 0 1 5 17 19 101 1 2 31 1 0 333 chain 30480 chr2 243199373 + 189039017 189039418 LTR7 482 - 5 482 83468 180 0 31 41 0 1 60 0 6 43 8 46 69 chain 13272 chr2 243199373 + 189048724 189048901 MER44B 551 - 90 270 147206 85 5 7 64 0 1 23 chain 22643 chr2 243199373 + 189062187 189062510 THE1C 375 - 40 361 117362 84 27 23 41 0 1 96 0 1 75 chain 28724 chr2 243199373 + 189095119 189095573 LTR7B 505 - 10 505 90228 41 14 13 79 1 0 63 1 89 15 66 11 69 0 10 105 chain 40592 chr2 243199373 + 189095573 189096031 MER9a3 513 - 16 474 68455 458 chain 40120 chr2 243199373 + 189099588 189100154 MER41A 554 + 0 554 69155 163 1 2 300 0 5 9 3 2 4 0 1 12 49 31 25 chain 98518 chr2 243199373 + 189103154 189104447 MER41-int 2638 + 1340 2633 37151 235 4 3 279 2 0 21 2 0 27 2 0 40 0 1 82 1 3 67 1 0 4 0 1 112 6 8 106 0 1 121 2 3 179 chain 41432 chr2 243199373 + 189104796 189105383 MER41A 554 + 2 554 67378 159 0 1 136 51 0 26 5 20 210 chain 21665 chr2 243199373 + 189111876 189112223 THE1B 368 + 0 367 121523 44 6 21 58 4 0 49 1 0 26 45 55 114 chain 11767 chr2 243199373 + 189126647 189127253 MER21A 919 + 0 912 153189 18 7 8 52 385 670 53 27 44 34 0 3 30 chain 8370 chr2 243199373 + 189129442 189129542 L1PA8 5853 + 5754 5853 169018 6 1 0 93 chain 30442 chr2 243199373 + 189131636 189132053 MLT2A1 477 - 84 477 83549 8 6 0 136 23 6 39 0 1 23 0 1 9 6 3 167 chain 23964 chr2 243199373 + 189140860 189141157 AluSp 311 - 13 310 110545 173 0 1 98 1 0 25 chain 7417 chr2 243199373 + 189141482 189141571 5S 121 - 32 121 174667 89 chain 133690 chr2 243199373 + 189176937 189178665 L1PA8A 6298 - 9 1697 27280 148 0 10 203 0 1 277 4 5 7 0 27 127 1 0 372 0 6 438 100 16 51 chain 5788 chr2 243199373 + 189204959 189205032 MSTA 426 - 19 92 187276 73 chain 117092 chr2 243199373 + 189249236 189250793 THE1B-int 1605 - 0 1605 32097 197 5 6 603 15 16 43 5 4 39 7 13 15 17 32 32 1 0 149 1 26 405 11 13 12 chain 28867 chr2 243199373 + 189252609 189252928 L1PA3long 6157 - 0 318 89596 259 1 0 59 chain 10848 chr2 243199373 + 189270796 189271078 Tigger3a 397 - 70 340 156796 48 72 10 49 3 0 5 10 4 49 28 87 18 chain 65293 chr2 243199373 + 189275388 189276827 HERVL-int 5654 - 695 2170 50426 66 0 21 31 523 537 28 8 9 265 24 23 14 3 1 19 4 4 201 2 4 244 0 1 7 chain 10625 chr2 243199373 + 189277065 189277235 HERVL-int 5654 - 590 762 157710 42 16 17 64 4 5 44 chain 13613 chr2 243199373 + 189325853 189326040 L1MA2 4263 - 2300 2479 145923 85 10 2 92 chain 6118 chr2 243199373 + 189368331 189368407 MER30 238 + 159 238 184291 31 0 3 45 chain 25258 chr2 243199373 + 189386521 189386812 AluYk4 311 + 0 291 103430 291 chain 10761 chr2 243199373 + 189409136 189409261 L1PA4 6152 + 6013 6138 157151 125 chain 26684 chr2 243199373 + 189422887 189423240 THE1A 353 + 0 351 97367 13 2 0 34 0 1 42 5 4 134 0 1 5 1 0 117 chain 94725 chr2 243199373 + 189423242 189424459 THE1A-int 1579 + 0 1579 38158 519 8 7 124 0 3 160 16 22 212 0 354 178 chain 69401 chr2 243199373 + 189431607 189432475 L1PA8A 6298 + 5427 6291 48646 61 0 3 82 1 0 404 9 2 275 4 5 32 chain 9370 chr2 243199373 + 189437443 189437716 L1MA8 2339 + 1991 2231 163714 18 2 1 62 117 91 35 6 0 33 chain 10703 chr2 243199373 + 189443107 189443261 L1PA8 5853 + 5701 5853 157400 38 3 2 19 2 1 92 chain 5993 chr2 243199373 + 189451609 189451682 L1PA2 6032 - 0 71 185303 6 2 0 65 chain 109009 chr2 243199373 + 189470337 189471684 LTR12C 1709 - 0 1708 34438 155 2 3 37 0 4 19 18 1 225 0 2 35 0 4 28 0 366 503 1 0 25 0 1 5 1 2 293 chain 67085 chr2 243199373 + 189513334 189514092 L1PA4 6152 - 13 765 49622 423 7 0 40 0 1 288 chain 55312 chr2 243199373 + 189514092 189514713 L1PA4 6152 + 4751 5376 55461 553 0 4 68 chain 78706 chr2 243199373 + 189525071 189525938 L1PA3long 6157 - 0 868 44183 112 0 1 755 chain 55282 chr2 243199373 + 189534061 189534679 L1PA5 6144 - 1404 2022 55536 618 chain 123743 chr2 243199373 + 189534681 189536070 L1PA5 6144 + 4745 6138 29795 552 0 4 837 chain 7205 chr2 243199373 + 189543186 189543279 Tigger5 388 + 139 232 176037 93 chain 33320 chr2 243199373 + 189545323 189545695 L1PA5 6144 - 14 387 78703 128 0 1 244 chain 122369 chr2 243199373 + 189545696 189547070 L1PA5 6144 + 4384 5763 30260 499 0 1 413 0 4 462 chain 36776 chr2 243199373 + 189562872 189563333 L1PA8 5853 - 808 1276 73838 34 0 2 21 0 4 361 5 6 40 chain 59493 chr2 243199373 + 189563333 189564118 L1PA8 5853 + 5055 5849 53115 29 0 2 100 0 1 205 5 12 4 0 1 82 0 1 72 1 0 46 2 0 68 2 1 10 1 0 51 2 1 19 14 13 32 0 4 40 chain 13197 chr2 243199373 + 189564266 189564417 L1PA7 6471 + 6317 6468 147476 151 chain 21337 chr2 243199373 + 189571098 189571444 MER1A 529 + 174 525 122728 13 5 6 91 8 9 87 1 3 60 30 31 51 chain 57998 chr2 243199373 + 189574316 189575212 L1MA1 4479 + 3266 4146 53973 87 0 9 27 3 0 131 3 0 41 14 9 145 2 1 23 2 0 15 2 1 9 1 0 5 7 8 49 1 0 20 2 0 13 1 0 81 16 12 42 0 1 83 1 0 26 4 3 35 1 0 4 chain 82139 chr2 243199373 + 189575778 189576809 MER11C 1089 + 0 1063 42707 229 0 1 34 0 3 52 1 18 249 12 13 175 0 8 107 0 1 153 0 1 19 chain 20511 chr2 243199373 + 189577274 189577498 L1PA2 6032 + 5808 6032 125592 224 chain 74911 chr2 243199373 + 189580421 189581235 L1PA2 6032 - 4 818 46054 814 chain 102793 chr2 243199373 + 189605738 189607001 L1PA7 6471 - 11 1265 36054 93 0 3 48 0 1 179 2 0 41 6 0 393 0 2 79 1 4 319 1 0 12 16 7 73 chain 44078 chr2 243199373 + 189608207 189608748 L1PA7 6471 + 5926 6466 64128 211 0 3 77 1 0 77 3 5 155 5 0 12 chain 113945 chr2 243199373 + 189632870 189634527 L1PA5 6144 - 12 1356 33106 137 0 2 511 0 3 304 329 0 283 2 13 91 chain 11140 chr2 243199373 + 189638135 189638347 MER2 342 + 7 215 155671 60 29 27 10 0 1 10 3 0 52 10 10 38 chain 183516 chr2 243199373 + 189666742 189669102 HERVL-int 5654 + 0 5652 20624 326 2 1 293 0 1 27 2 1 686 0 1 43 1 0 265 24 3302 114 5 15 149 0 1 46 1 4 161 0 1 215 chain 21217 chr2 243199373 + 189675041 189675302 AluSc 308 + 40 302 123151 90 0 1 171 chain 85702 chr2 243199373 + 189689786 189690710 L1PA2 6032 - 2 926 41264 924 chain 179474 chr2 243199373 + 189690711 189692757 L1P2 5180 + 1759 3805 21033 707 0 1 950 1 0 388 chain 114419 chr2 243199373 + 189705050 189706520 L1P3 4156 + 3 1469 32965 62 0 1 62 1 0 118 17 16 58 1 0 533 7 2 535 0 3 76 chain 38466 chr2 243199373 + 189706520 189707017 L1PA7 6471 + 5971 6470 71493 255 13 15 174 0 2 42 2 0 11 chain 458795 chr2 243199373 + 189726811 189733091 L1PA8A 6298 + 34 6291 8449 6 1 0 16 1 0 11 23 12 23 0 1 16 19 10 17 3 2 9 2 1 12 1 0 6 2 1 12 2 0 16 36 30 7 1 0 15 14 9 28 18 16 20 9 1 47 62 57 76 1 0 71 0 3 5 3 0 12 34 34 133 0 1 38 4 0 51 0 4 5 0 1 233 2 9 111 1 2 52 8 29 63 9 8 594 4 5 61 0 1 439 1 0 24 2 4 461 0 4 436 2 0 280 30 13 175 6 7 339 5 7 449 1 0 25 0 2 123 1 0 37 0 3 31 1 0 328 4 3 267 0 1 174 0 9 158 1 2 211 0 1 117 2 0 124 chain 73135 chr2 243199373 + 189755637 189756687 LTR12C 1709 + 515 1700 46955 322 1 0 156 0 166 49 27 20 34 5 6 24 13 14 147 34 11 77 1 0 75 10 9 75 chain 445735 chr2 243199373 + 189769607 189775209 HERVL-int 5654 - 0 5615 8881 309 2 0 120 2 1 40 40 9 740 16 17 510 0 14 546 1 3 440 1 2 4 1 0 441 1 17 184 1 0 679 0 1 703 1 0 219 0 1 285 0 15 252 14 14 22 1 0 27 chain 29690 chr2 243199373 + 189775209 189775609 MLT2A1 477 - 82 477 85865 10 4 0 180 0 1 24 0 1 8 3 0 104 2 0 5 0 2 60 chain 61341 chr2 243199373 + 189790303 189790980 L1PA4 6152 + 5466 6143 52178 677 chain 73170 chr2 243199373 + 189824711 189825836 L1PB 1623 - 37 1114 46937 11 2 0 22 78 52 13 39 35 7 1 0 135 26 12 148 5 6 204 1 0 160 1 0 272 chain 67528 chr2 243199373 + 189825857 189826914 L1PB1 5432 + 4401 5423 49430 54 8 9 165 4 0 385 0 2 82 10 11 6 3 0 23 1 0 5 1 0 13 18 12 13 7 8 31 2 1 16 2 1 43 1 0 15 1 0 4 19 8 19 17 13 6 2 0 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 21133 chr2 243199373 + 189837419 189837680 AluY 311 + 38 300 123435 94 7 8 160 chain 41495 chr2 243199373 + 189887999 189888816 L1PB1 5432 + 4681 5420 67284 104 1 0 46 8 12 47 2 1 118 0 2 6 2 0 66 81 31 24 1 0 8 1 0 12 8 4 7 1 0 50 1 0 10 8 7 34 56 43 14 2 0 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 16 chain 305679 chr2 243199373 + 189891503 189894798 L1PA2 6032 + 2736 6032 13182 2547 0 1 748 chain 24091 chr2 243199373 + 189911563 189911863 AluSc 308 + 2 296 109790 18 6 0 276 chain 20811 chr2 243199373 + 189961125 189961374 AluY 311 + 40 309 124563 24 0 20 39 1 0 9 0 1 176 chain 7940 chr2 243199373 + 189988106 189988324 MLT1C 463 + 55 455 171380 36 18 16 17 12 6 7 1 0 27 7 0 10 23 223 43 3 1 14 chain 4541 chr2 243199373 + 190052205 190052278 MIR 256 + 117 188 200320 44 6 4 23 chain 54016 chr2 243199373 + 190061433 190062175 L1PA8 5853 + 5104 5853 56351 294 7 5 67 0 14 80 1 0 46 0 1 71 25 22 36 2 1 19 1 0 93 chain 22834 chr2 243199373 + 190103253 190103614 THE1D 372 - 0 353 116427 148 1 0 12 44 46 119 10 1 27 chain 23979 chr2 243199373 + 190104246 190104505 L1PA3long 6157 + 5898 6157 110454 259 chain 84268 chr2 243199373 + 190108363 190109528 THE1B-int 1605 - 5 1605 41792 42 0 1 227 25 512 361 0 25 248 78 0 184 chain 95123 chr2 243199373 + 190116410 190117493 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96 5 6 58 0 1 49 0 2 349 0 5 268 0 38 221 4 6 414 5 9 433 0 19 235 0 1 110 8 0 20 0 1 103 4 3 81 7 6 179 chain 32928 chr2 243199373 + 190266385 190266929 L1PA11 4918 - 354 873 79322 10 1 0 13 33 24 12 4 0 14 6 0 3 1 0 14 7 5 74 1 0 64 1 0 77 6 5 170 1 2 32 chain 20434 chr2 243199373 + 190266946 190267207 AluSc5 308 - 18 272 125798 6 5 0 161 3 0 79 0 1 7 chain 60495 chr2 243199373 + 190280783 190281447 L1PA4 6152 + 5487 6151 52583 664 chain 33104 chr2 243199373 + 190290979 190291403 MER4A1 472 + 33 472 79047 42 1 6 245 0 3 114 0 7 22 chain 485682 chr2 243199373 + 190295117 190301263 L1PA5 6144 + 183 6140 7534 26 3 2 84 1 0 4 0 1 107 6 15 78 1 0 23 1 2 57 12 26 307 6 10 29 30 5 69 1 2 4 1 0 130 17 8 41 2 1 219 1 0 530 0 1 23 0 15 311 0 1 1572 0 3 455 0 4 462 1 2 873 1 0 74 0 1 212 198 0 157 6 0 11 chain 15540 chr2 243199373 + 190311473 190311835 MER44B 551 - 94 487 139769 51 0 4 19 0 3 90 150 170 24 0 4 28 chain 10975 chr2 243199373 + 190328180 190328373 MER30 238 - 0 237 156294 105 11 37 33 30 48 14 chain 23345 chr2 243199373 + 190373405 190373774 THE1B 368 + 0 368 113959 17 2 0 23 0 5 29 1 0 33 2 3 62 17 14 23 17 17 67 1 0 75 chain 118574 chr2 243199373 + 190373806 190375350 THE1B-int 1605 + 34 1597 31594 167 16 0 229 1 26 17 1 10 7 2 0 3 7 0 74 8 13 95 0 3 100 7 8 562 0 1 248 chain 13179 chr2 243199373 + 190390828 190390976 L1P1 4361 - 4212 4360 147546 148 chain 8755 chr2 243199373 + 190455374 190455609 L1MA4 2864 - 596 819 166887 34 85 73 37 7 6 26 6 7 40 chain 38997 chr2 243199373 + 190466495 190466927 L1PA4 6152 + 5708 6140 70750 432 chain 43462 chr2 243199373 + 190483353 190483924 L1M1 2793 - 98 667 64857 10 1 0 12 1 0 44 1 0 126 1 0 69 3 0 39 0 5 264 chain 6704 chr2 243199373 + 190498231 190498350 MER20 218 + 24 141 179657 56 26 24 37 chain 121374 chr2 243199373 + 190517659 190519221 SVA_B 1603 + 4 1600 30574 14 0 6 18 12 5 71 0 1 77 1 0 404 63 0 46 0 117 83 0 1 4 3 1 13 1 0 16 4 0 40 4 0 40 5 1 14 1 0 67 9 8 362 3 0 187 chain 63573 chr2 243199373 + 190521223 190521983 L1PA7 6471 + 5710 6470 51204 420 2 1 177 15 16 146 chain 24720 chr2 243199373 + 190527989 190528278 AluSp 311 - 22 311 106329 289 chain 221672 chr2 243199373 + 190542544 190545600 L1PB2 3958 - 125 3168 17774 58 1 0 22 2 0 74 1 0 58 11 5 23 0 2 51 1 0 47 1 2 40 3 0 12 2 0 61 5 1 6 1 0 8 1 0 41 17 15 36 0 5 131 6 7 41 6 7 54 0 10 37 1 0 52 4 3 183 0 1 257 38 0 352 11 11 146 0 8 122 10 14 140 0 4 95 2 0 15 0 4 55 0 1 110 0 1 63 0 1 35 0 4 42 15 12 187 1 0 18 0 7 24 0 1 115 0 1 105 chain 33874 chr2 243199373 + 190565171 190565726 L1MA3 4352 - 37 571 77819 27 1 0 5 2 1 15 6 8 27 4 0 64 0 1 41 44 33 221 16 9 82 chain 8869 chr2 243199373 + 190568618 190568752 THE1D 372 - 227 372 166290 40 0 1 16 17 27 61 chain 527869 chr2 243199373 + 190576353 190582819 L1PA6 6164 + 0 6161 4416 138 1 4 391 2 0 898 0 5 190 0 1 226 0 5 262 0 1 252 26 28 274 0 1 361 328 0 147 0 1 4 0 1 506 0 1 1621 0 4 653 1 2 5 1 0 179 chain 29526 chr2 243199373 + 190583466 190583774 AluYb8 318 - 10 318 86544 308 chain 55189 chr2 243199373 + 190624506 190625163 SVA_B 1603 - 23 642 55594 542 36 0 9 3 0 14 0 1 53 chain 15669 chr2 243199373 + 190688015 190688222 L1PA5 6144 - 15 221 139368 132 3 0 5 0 3 5 4 3 58 chain 6848 chr2 243199373 + 190735766 190735926 MSTB-int 1649 - 1165 1327 178601 50 7 28 34 44 25 25 chain 2037 chr2 243199373 + 190745933 190746075 MER4A1 472 + 0 142 144058 142 chain 59645 chr2 243199373 + 190746111 190746874 MER4-int 2692 - 96 864 53027 43 0 1 8 1 0 54 1 4 208 0 2 42 9 2 23 0 2 83 0 4 104 3 0 133 0 4 51 chain 646 chr2 243199373 + 190746874 190746919 MER4A1 472 + 427 472 144058 45 chain 42029 chr2 243199373 + 190747025 190747639 MER4A 717 - 26 692 66583 87 2 1 102 11 10 84 1 41 56 0 4 33 0 5 6 7 14 124 3 1 52 8 3 26 0 1 4 0 4 8 chain 526574 chr2 243199373 + 190751718 190758404 L1PA7 6471 - 1 6471 4538 241 5 17 80 0 1 174 2 0 53 3 13 191 0 2 69 0 6 25 1 6 326 0 4 127 0 2 153 0 10 510 1 8 243 0 1 205 0 6 444 0 4 294 0 2 195 0 4 300 0 4 55 5 1 53 1 3 117 0 2 64 0 3 90 0 1 185 318 0 55 1 0 501 1 2 404 0 4 687 2 17 97 1 2 407 chain 11706 chr2 243199373 + 190768530 190768685 L1PA16 3655 - 68 220 153440 9 3 0 143 chain 24147 chr2 243199373 + 190784170 190784466 L1PA8A 6298 - 8 306 109489 104 0 1 115 0 1 77 chain 2421 chr2 243199373 + 190795801 190795842 L1MC4 1079 - 534 581 234037 13 4 10 24 chain 9528 chr2 243199373 + 190819202 190819326 MER85 139 + 5 139 162940 83 4 14 37 chain 28964 chr2 243199373 + 190820889 190821194 AluYa5 310 - 5 310 89160 305 chain 17799 chr2 243199373 + 190828220 190828480 Tigger1 2417 - 669 937 133412 18 7 0 98 0 1 70 13 27 54 chain 4531 chr2 243199373 + 190831079 190831134 Tigger1 2417 - 2308 2363 200444 55 chain 19766 chr2 243199373 + 190834212 190834475 AluSg7 307 + 38 301 127920 85 1 0 7 1 2 54 0 2 5 2 0 108 chain 537396 chr2 243199373 + 190835712 190841844 L1PA5 6144 - 1 6144 3255 754 0 3 99 2 1 197 0 1 1214 1 0 421 0 1 203 0 4 358 0 1 389 5 0 70 0 4 996 2 0 290 0 2 49 0 1 35 0 1 6 1 2 281 5 6 754 chain 10243 chr2 243199373 + 190845402 190845592 L1PA17 2846 - 1306 2818 159407 47 29 1352 106 1 0 7 chain 26952 chr2 243199373 + 190851786 190852138 THE1A 353 + 0 353 96445 111 1 0 7 0 1 52 1 0 15 1 4 32 1 0 131 chain 8583 chr2 243199373 + 190867180 190867277 L1PA4 6152 + 6053 6150 167826 97 chain 14258 chr2 243199373 + 190868856 190869009 L1PA3long 6157 + 6004 6157 143684 153 chain 24677 chr2 243199373 + 190893781 190894077 AluSp 311 - 15 311 106569 296 chain 157749 chr2 243199373 + 190905211 190907389 L1PA14 3548 - 105 2262 23626 28 1 0 17 1 0 11 1 0 5 7 5 13 4 0 21 5 1 10 1 0 111 1 0 84 1 0 6 2 0 17 5 2 87 9 7 13 2 0 5 2 0 47 2 0 14 3 1 9 1 2 47 0 1 4 1 0 112 4 8 218 1 0 217 0 3 133 1 0 157 5 4 477 0 5 17 10 14 7 4 0 217 chain 112552 chr2 243199373 + 190918944 190920207 L1PA4 6152 + 4868 6143 33515 281 0 5 147 0 8 583 1 0 251 chain 10691 chr2 243199373 + 190936795 190936931 L1PA16 3655 + 3400 3536 157451 136 chain 22300 chr2 243199373 + 190939103 190939389 AluSc 308 + 8 291 118908 9 1 0 217 6 4 53 chain 29176 chr2 243199373 + 190980034 190980344 AluYa5 310 - 0 310 88173 310 chain 100494 chr2 243199373 + 190982657 190983791 L1P1 4361 + 3191 4328 36630 64 0 5 890 1 0 155 1 0 23 chain 36166 chr2 243199373 + 191000980 191001448 LTR22A 463 - 0 463 74685 368 0 1 10 15 9 75 chain 121604 chr2 243199373 + 191004509 191006083 THE1C-int 1605 - 0 1605 30507 306 1 4 114 7 8 258 0 10 116 3 4 24 0 9 295 18 25 432 chain 50835 chr2 243199373 + 191008359 191008910 L1PA2 6032 + 5481 6032 58407 551 chain 269478 chr2 243199373 + 191010748 191014680 L1PB1 5432 - 8 3593 15207 4 1 0 16 1 0 12 1 0 22 1 0 24 2 0 14 8 5 19 18 8 5 1 0 15 1 0 42 7 21 50 2 0 9 16 11 13 10 9 9 3 0 11 1 2 32 0 1 14 22 6 343 0 2 84 3 0 282 0 1 254 1 0 47 0 3 296 1 2 10 17 7 121 1 4 278 6 7 11 0 9 7 10 1 605 2 0 131 321 0 4 0 1 47 0 1 19 0 3 172 0 1 48 1 2 171 0 4 233 chain 34152 chr2 243199373 + 191022584 191023047 LTR2B 499 + 9 499 77410 5 1 0 10 0 10 37 1 0 40 0 7 11 0 12 111 5 0 7 6 11 36 0 1 10 1 0 182 chain 115886 chr2 243199373 + 191032136 191033710 THE1B-int 1605 - 5 1578 32500 4 0 1 104 0 1 5 7 6 565 7 6 144 9 0 10 0 9 22 0 2 6 12 10 9 0 1 4 1 0 84 23 1 6 5 0 143 2 27 214 5 6 38 1 0 29 0 1 115 chain 3900 chr2 243199373 + 191034689 191034743 MADE1 96 - 26 96 208845 8 0 16 46 chain 42458 chr2 243199373 + 191078143 191078738 LTR71B 605 + 3 605 66063 85 0 2 44 16 13 39 6 15 153 1 0 103 8 7 127 1 2 12 chain 5012 chr2 243199373 + 191080475 191080537 LTR18B 584 + 330 392 195005 62 chain 65525 chr2 243199373 + 191087203 191088006 L1PA7 6471 + 5665 6470 50330 8 0 1 623 18 19 154 chain 376115 chr2 243199373 + 191088520 191093284 L1PA5 6144 + 5 6143 10882 116 0 14 427 0 1620 515 1 3 25 0 9 39 0 4 135 0 1 935 0 13 197 1 0 102 0 1 16 320 0 117 1 0 114 1 2 431 0 9 297 0 16 131 2 0 99 0 3 104 1 4 569 0 2 68 chain 37301 chr2 243199373 + 191099690 191100181 LTR3B_ 500 - 0 500 73076 41 1 10 51 0 1 93 2 3 137 14 15 108 3 0 41 chain 336836 chr2 243199373 + 191102411 191107353 L1PA8 5853 - 19 5209 11973 74 1 0 19 2 1 32 2 0 18 12 12 70 2 0 46 1 0 47 4 3 364 6 5 80 303 0 54 0 2 16 0 4 36 0 3 240 0 2 76 1 0 4 0 1 145 3 1 131 0 7 134 0 4 39 313 770 435 0 4 22 0 4 15 0 1 25 1 0 17 4 2 25 0 7 159 3 6 44 0 4 68 0 1 69 0 4 207 13 17 7 1 0 89 0 1 65 0 4 69 0 2 238 0 3 524 0 2 16 0 1 115 9 13 61 14 51 165 0 1 187 chain 32568 chr2 243199373 + 191107355 191107756 HERVL-int 5654 + 5236 5654 79912 187 0 6 172 0 11 42 chain 33038 chr2 243199373 + 191107756 191108185 MLT2A1 477 + 0 469 79159 142 0 1 25 0 4 152 1 0 61 3 39 45 chain 19083 chr2 243199373 + 191122726 191123103 MSTA 426 + 0 426 129869 108 22 46 39 89 94 8 0 20 111 chain 106783 chr2 243199373 + 191133568 191134946 L1PA8 5853 + 4455 5853 35037 212 1 0 339 1 9 78 0 1 110 25 26 291 3 1 42 1 0 41 3 4 9 0 4 60 1 0 9 1 0 49 2 1 19 1 0 42 0 13 38 chain 10524 chr2 243199373 + 191144081 191144259 MSTC-int 1625 - 14 189 158154 39 25 30 16 7 0 19 1 0 71 chain 50121 chr2 243199373 + 191144259 191144849 LTR10C 591 + 0 591 58928 34 2 0 137 0 1 338 0 2 79 chain 36744 chr2 243199373 + 191147867 191148312 LTR10F 562 + 0 562 73887 38 0 2 76 0 115 331 chain 6025 chr2 243199373 + 191148509 191148605 MER105 203 - 4 107 185024 8 0 3 38 9 13 41 chain 13048 chr2 243199373 + 191159981 191160243 Tigger4b 360 - 0 289 148043 50 1 7 51 4 21 50 65 69 41 chain 95388 chr2 243199373 + 191162485 191163762 L1PA8 5853 - 8 1288 37987 84 4 3 13 8 7 50 2 1 8 2 1 67 2 0 45 6 5 233 0 1 4 1 0 64 0 4 90 10 11 70 0 2 34 0 2 37 0 3 18 0 4 74 12 6 339 chain 44149 chr2 243199373 + 191174575 191175133 MLT2A2 560 + 0 560 64010 183 1 0 11 1 4 362 chain 27696 chr2 243199373 + 191201061 191201483 L1PA8 5853 - 0 445 94058 93 1 0 19 2 1 35 34 35 61 2 0 10 0 6 29 1 0 12 0 21 123 chain 7257 chr2 243199373 + 191242889 191243047 L1MB3 1562 - 77 212 175723 26 56 34 4 1 0 71 chain 29545 chr2 243199373 + 191294577 191294925 L1PA6 6164 - 2 351 86434 330 0 1 18 chain 132737 chr2 243199373 + 191294933 191296476 SVA_D 2077 - 1 2075 27473 577 4 0 11 0 43 40 0 489 13 1 0 138 40 0 126 0 40 523 0 2 45 0 2 25 chain 43433 chr2 243199373 + 191314250 191314750 L1PA3long 6157 + 5665 6157 64891 32 10 1 96 0 1 362 chain 539064 chr2 243199373 + 191335830 191341935 L1PA4 6152 + 0 6146 2977 484 4 1 152 0 3 516 0 3 476 0 1 718 0 15 252 9 11 62 0 5 1218 0 1 6 0 1 430 1 5 793 0 5 140 0 4 844 chain 4064 chr2 243199373 + 191346698 191346748 MLT1J1 437 + 54 104 206427 50 chain 29479 chr2 243199373 + 191347598 191347917 AluYb8 318 - 0 318 86716 192 1 0 126 chain 408682 chr2 243199373 + 191356165 191361772 L1PB1 5432 + 79 5422 9842 11 0 2 52 0 1 36 1 0 112 0 1 106 3 2 6 1 0 14 0 2 316 0 5 156 0 10 236 165 13 99 76 0 12 4 0 24 0 3 91 0 1 7 0 2 513 0 2 96 0 9 182 0 3 48 0 5 83 0 1 93 0 6 280 0 4 64 23 26 20 1 0 893 8 12 189 0 1 235 0 4 42 0 1 143 1 3 199 1 3 70 6 9 67 0 2 171 0 1 36 0 1 121 0 7 58 102 12 24 1 0 8 1 0 12 5 1 9 2 0 11 0 1 40 2 1 15 1 0 43 2 1 16 2 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 4 9 1 0 18 chain 9940 chr2 243199373 + 191384666 191384879 Tigger1 2417 + 2208 2417 160879 21 1 0 17 2 4 6 4 0 32 1 0 66 44 44 19 chain 21868 chr2 243199373 + 191402012 191402319 THE1C 375 + 1 327 120758 35 0 1 71 12 26 51 8 10 9 0 2 121 chain 5760 chr2 243199373 + 191411012 191411229 MER2 342 + 127 341 187541 73 127 124 17 chain 3550 chr2 243199373 + 191417802 191417842 U7 62 - 21 61 214533 40 chain 373777 chr2 243199373 + 191418592 191423198 L1PA7 6471 + 0 6461 10967 198 1 0 28 18 28 169 0 1 322 7 6 431 11 1 560 7 9 56 16 17 125 0 1845 389 1 0 489 0 4 518 1 0 11 5 6 89 0 1 151 0 1 9 0 1 666 0 1 175 9 10 144 chain 3148 chr2 243199373 + 191459836 191459873 L1PA7 6471 + 5167 5204 221959 37 chain 108209 chr2 243199373 + 191459874 191461129 L1PA7 6471 + 5204 6464 34644 410 0 3 81 0 2 764 chain 49775 chr2 243199373 + 191473775 191474415 PABL_A 660 - 19 660 59179 63 0 4 112 12 10 65 0 3 101 7 8 45 1 0 103 1 0 91 3 0 36 chain 133790 chr2 243199373 + 191474861 191476654 PABL_A-int 1935 - 21 1835 27263 17 7 4 14 14 34 9 1 0 64 0 1 44 1 0 276 1 0 125 0 3 89 0 5 178 0 1 65 2 1 93 5 6 312 1 0 157 5 7 70 1 0 6 0 1 36 12 11 32 0 1 113 11 9 25 2 0 5 chain 11780 chr2 243199373 + 191517629 191517803 MER30 238 + 0 238 153131 16 13 14 57 0 57 9 0 6 79 chain 21199 chr2 243199373 + 191559108 191559373 AluY 311 + 36 293 123216 82 8 0 175 chain 25537 chr2 243199373 + 191573276 191573642 THE1B 368 - 0 368 102070 176 2 0 24 1 0 10 0 1 25 0 1 89 24 27 15 chain 28841 chr2 243199373 + 191581691 191581997 AluYa5 310 - 4 310 89715 306 chain 12637 chr2 243199373 + 191595608 191595819 MSTA 426 + 150 379 149696 88 27 25 33 5 25 58 chain 15395 chr2 243199373 + 191601663 191601850 Tigger3a 397 + 139 327 140212 48 0 1 139 chain 186311 chr2 243199373 + 191614035 191616552 L1PA8 5853 + 3385 5601 20391 30 0 1 450 0 4 122 0 2 189 0 1 189 5 6 133 0 1 493 314 2 363 0 3 147 1 0 41 1 0 39 chain 120646 chr2 243199373 + 191624819 191626254 LTR12C 1709 - 0 1709 30819 77 1 9 395 0 4 106 3 1 5 1 0 98 0 278 136 5 1 309 9 0 290 chain 535615 chr2 243199373 + 191636980 191643118 L1PA4 6152 - 1 6142 3498 4 0 1 107 0 1 1686 0 4 307 0 1 261 1 2 674 11 10 693 0 1 456 0 1 988 10 3 178 0 1 183 3 0 5 0 3 571 chain 20597 chr2 243199373 + 191661416 191661653 AluY 311 + 63 304 125304 46 0 3 20 0 1 171 chain 21026 chr2 243199373 + 191662035 191662298 AluSc 308 + 38 303 123829 234 2 4 27 chain 29340 chr2 243199373 + 191703704 191704041 L1PA4 6152 + 5804 6143 87340 178 1 2 24 0 1 134 chain 29110 chr2 243199373 + 191713749 191714056 AluYg6 310 - 3 310 88506 307 chain 28495 chr2 243199373 + 191726960 191727333 THE1C 375 + 7 375 91203 16 1 0 243 3 0 84 1 0 25 chain 23787 chr2 243199373 + 191737291 191737635 THE1B 368 - 0 368 111550 125 35 45 26 1 0 113 0 15 44 chain 2761 chr2 243199373 + 191753244 191753384 MER58A 224 - 28 175 229319 20 94 101 26 chain 24834 chr2 243199373 + 191763365 191763644 AluSp 311 - 20 302 105699 197 0 3 82 chain 4148 chr2 243199373 + 191774072 191774225 L1MA8 2339 - 110 234 205261 12 10 9 13 3 1 32 24 21 17 21 0 5 2 0 14 chain 340793 chr2 243199373 + 191819862 191824282 L1PA7 6471 - 7 4139 11880 5 2 0 134 16 18 506 0 4 177 4 7 380 0 20 253 6 5 152 1 0 316 303 0 118 2 1 155 0 2 391 28 0 238 2 10 19 0 4 92 0 5 352 0 4 55 4 0 333 5 9 58 6 0 119 0 2 188 chain 15700 chr2 243199373 + 191863233 191863417 AluYc 301 + 117 301 139269 184 chain 67155 chr2 243199373 + 191945588 191946400 L1PA7 6471 - 10 832 49585 34 0 9 61 0 1 653 5 6 29 2 1 28 chain 515617 chr2 243199373 + 191957303 191963491 L1PA6 6164 + 0 6160 5606 64 3 4 378 0 1 13 41 40 292 17 0 220 0 1 128 1 0 138 6 8 691 1 0 347 12 0 193 0 2 28 14 0 50 0 3 578 3 0 6 2 0 4 0 1 1458 0 1 524 0 1 44 0 9 88 3 0 9 1 2 602 0 4 85 0 1 136 2 0 6 chain 10319 chr2 243199373 + 191966821 191966950 MER85 139 - 0 139 159038 39 0 10 90 chain 4326 chr2 243199373 + 191985292 191985341 L1PA5 6144 - 1322 1371 197730 49 chain 116985 chr2 243199373 + 191985341 191986665 L1PA5 6144 + 4823 6140 32134 171 0 4 812 0 1 180 7 0 143 5 0 6 chain 189946 chr2 243199373 + 192002956 192005600 L1PB2 3958 + 1188 3838 20054 39 0 3 71 1 5 56 16 7 12 0 9 185 3 0 195 6 10 106 12 13 16 6 5 46 1 2 67 1 0 20 14 19 152 0 1 256 9 4 437 1 0 69 0 1 41 11 18 179 0 1 74 2 0 56 1 0 12 5 0 62 0 2 11 2 0 42 1 0 61 2 1 63 1 0 44 18 21 71 2 0 22 1 0 63 chain 9749 chr2 243199373 + 192020919 192021081 MER30 238 - 7 202 161849 32 1 4 27 1 7 9 6 0 14 2 31 26 0 1 44 chain 369137 chr2 243199373 + 192025316 192029670 L1P2 5180 + 15 4374 11118 79 1 2 48 6 5 45 1 0 49 1 0 263 0 1 8 1 0 273 7 5 1062 0 1 471 1 0 265 1 2 201 0 2 29 1 2 686 2 1 6 0 1 159 0 5 688 chain 20444 chr2 243199373 + 192064387 192064737 THE1B 368 + 0 368 125773 104 12 13 52 1 0 6 0 3 6 42 58 64 7 6 56 chain 7918 chr2 243199373 + 192065549 192065696 MER5A 189 + 35 183 171536 22 1 0 9 20 22 32 0 1 47 5 4 11 chain 6846 chr2 243199373 + 192068332 192068406 L1PA2 6032 - 338 412 178616 74 chain 33398 chr2 243199373 + 192068406 192068767 L1PA2 6032 + 5671 6032 78567 361 chain 26802 chr2 243199373 + 192070103 192070402 SVA_D 2077 + 1777 2077 96975 59 1 2 239 chain 25299 chr2 243199373 + 192085859 192086225 THE1D 372 + 0 372 103231 165 29 29 44 1 7 95 1 0 24 0 1 7 chain 28599 chr2 243199373 + 192209275 192209580 AluYa5 310 + 1 306 90739 305 chain 24469 chr2 243199373 + 192243052 192243389 LTR7B 505 - 64 505 107709 79 1 0 44 8 41 25 6 68 69 0 10 105 chain 170805 chr2 243199373 + 192261927 192263981 SVA_E 1901 - 9 1901 21961 744 0 3 98 124 0 124 52 0 86 2 0 10 0 15 215 0 3 15 4 3 251 3 0 180 1 0 145 chain 9686 chr2 243199373 + 192262769 192262893 SVA_E 1901 - 601 727 142056 13 11 13 100 chain 1973 chr2 243199373 + 192263046 192263069 SVA_E 1901 - 657 680 155935 23 chain 3268 chr2 243199373 + 192275272 192275383 MER112 246 + 35 148 219627 22 29 32 24 21 20 15 chain 17820 chr2 243199373 + 192277921 192278138 MER47A 366 - 49 267 133334 213 0 1 4 chain 26268 chr2 243199373 + 192283208 192283514 AluSp 311 - 5 311 98939 306 chain 28696 chr2 243199373 + 192302079 192302471 MER51B 395 - 0 395 90346 84 0 1 56 12 11 124 2 3 52 1 0 55 0 3 6 chain 3069 chr2 243199373 + 192303336 192303382 MADE1 96 - 34 96 223584 13 1 17 32 chain 9612 chr2 243199373 + 192307545 192307766 MER33 330 - 45 262 162529 68 26 19 45 50 53 32 chain 22612 chr2 243199373 + 192309358 192309651 AluSc8 310 + 5 298 117526 117 4 7 153 4 1 15 chain 52933 chr2 243199373 + 192312749 192313391 LTR12_ 688 + 0 688 57062 142 1 2 375 0 35 108 0 10 16 chain 57478 chr2 243199373 + 192320810 192321441 SVA_C 1631 - 4 672 54253 6 4 0 576 0 41 45 chain 22102 chr2 243199373 + 192340996 192341269 LTR10C 591 - 318 591 119772 5 0 1 203 0 1 32 2 0 31 chain 4611 chr2 243199373 + 192347930 192348353 MER61E 571 + 105 517 199505 23 329 317 27 9 10 35 chain 11680 chr2 243199373 + 192359011 192359168 LTR1B 797 - 616 790 153558 34 6 23 117 chain 26057 chr2 243199373 + 192363942 192364306 THE1B 368 + 0 368 99802 19 2 0 18 0 5 72 0 1 5 2 1 47 1 0 8 1 0 16 0 2 14 4 5 155 chain 4818 chr2 243199373 + 192367511 192367703 MER4B 649 - 407 649 197141 25 119 170 22 1 0 25 chain 39122 chr2 243199373 + 192368573 192369566 LTR9B 643 - 6 643 70571 40 21 24 47 11 1 11 0 7 63 22 23 199 0 1 13 391 23 74 0 8 30 4 6 67 chain 74796 chr2 243199373 + 192371606 192372697 MER11B 1079 + 0 1079 46116 188 0 1 246 8 10 12 18 17 22 24 12 15 0 1 14 5 7 49 0 1 123 1 0 23 10 0 29 15 17 7 0 2 24 5 6 53 0 1 169 2 1 29 chain 12856 chr2 243199373 + 192390532 192390800 L1PB1 5432 + 5172 5420 148814 40 1 0 8 19 17 44 2 1 14 1 0 4 2 0 13 5 0 14 1 0 4 19 15 24 1 0 21 1 0 13 1 0 16 chain 25593 chr2 243199373 + 192394378 192394684 AluSg7 307 - 0 307 101765 101 0 1 205 chain 7194 chr2 243199373 + 192459559 192459643 L1PA7 6471 + 6382 6466 176113 84 chain 45068 chr2 243199373 + 192464366 192464911 MER41A 554 + 0 554 62973 405 0 4 59 0 5 81 chain 2920 chr2 243199373 + 192484841 192484872 MER58C 217 - 34 65 226697 31 chain 15150 chr2 243199373 + 192494153 192494636 L1MB1 2102 - 109 584 140913 51 2 0 19 6 7 41 1 0 11 136 144 69 98 84 49 chain 44269 chr2 243199373 + 192509214 192509749 L1PA7 6471 - 3 549 63859 41 0 9 256 0 1 110 1 2 127 chain 74310 chr2 243199373 + 192528216 192529031 L1PA3long 6157 - 2 821 46355 425 0 2 29 0 2 361 chain 164697 chr2 243199373 + 192536046 192537931 L1PA5 6144 + 4248 6143 22701 1049 0 4 7 0 3 375 1 0 209 0 2 95 7 0 7 0 7 77 7 9 51 chain 17568 chr2 243199373 + 192562544 192562795 Tigger3 1187 - 671 923 134079 138 8 11 71 13 11 21 chain 21751 chr2 243199373 + 192567084 192567353 Tigger1 2417 + 1004 1286 121207 262 0 13 7 chain 143394 chr2 243199373 + 192605996 192608130 SVA_D 2077 + 88 2077 25582 328 2 1 282 0 40 66 40 0 23 0 40 30 390 157 98 0 1 103 0 1 4 16 39 5 0 3 79 0 1 4 18 17 513 0 20 89 0 1 44 chain 3346 chr2 243199373 + 192606802 192606836 SVA_F 1814 + 1153 1187 218127 34 chain 23937 chr2 243199373 + 192606844 192607134 SVA_F 1814 + 855 1291 110709 25 0 1 13 0 5 48 1 143 48 1 0 136 1 0 17 chain 553671 chr2 243199373 + 192626575 192632602 L1PA2 6032 + 0 6031 987 74 0 1 2493 0 1 2430 0 2 1030 chain 122763 chr2 243199373 + 192638265 192639838 THE1B-int 1605 + 0 1605 30127 432 0 25 222 0 3 127 3 4 304 9 10 147 0 3 108 4 3 217 chain 23360 chr2 243199373 + 192639839 192640193 THE1B 368 + 1 368 113872 43 23 38 84 1 0 8 1 0 24 0 2 91 3 0 37 1 2 38 chain 51796 chr2 243199373 + 192645544 192646172 L1PA6 6164 - 9 643 57758 7 0 4 128 0 6 6 6 0 92 1 0 358 0 3 30 chain 41628 chr2 243199373 + 192650230 192650736 L1PA7 6471 - 2 507 67119 8 4 0 13 0 1 26 0 1 52 0 1 403 chain 20328 chr2 243199373 + 192659725 192660059 THE1C 375 - 39 375 126149 57 0 1 56 59 63 39 3 0 120 chain 32708 chr2 243199373 + 192665269 192665649 L1PA6 6164 + 5781 6162 79674 229 0 1 151 chain 90074 chr2 243199373 + 192673735 192674838 L1PA7 6471 + 5364 6470 39625 127 2 0 130 1 4 274 4 0 70 1 2 165 0 1 176 8 9 133 1 4 11 chain 30864 chr2 243199373 + 192773977 192774386 MLT2A1 477 - 82 477 82743 122 14 1 68 5 6 18 0 1 8 3 0 171 chain 118405 chr2 243199373 + 192786202 192787725 LTR12C 1709 + 0 1709 31645 60 0 2 204 3 30 42 0 43 311 8 136 9 1 0 43 1 0 32 0 2 198 1 0 4 4 2 106 11 4 178 4 8 19 0 21 136 33 0 51 0 4 64 chain 25876 chr2 243199373 + 192866262 192866612 THE1B 368 + 0 368 100544 169 1 0 29 26 45 125 chain 4654 chr2 243199373 + 192892287 192892340 MLT1F2 592 + 38 91 199027 53 chain 25600 chr2 243199373 + 192892687 192893054 THE1B 368 + 0 368 101727 44 18 24 22 0 1 12 5 0 69 5 4 192 chain 2639 chr2 243199373 + 192939340 192939369 MER3 215 - 58 87 231168 29 chain 21775 chr2 243199373 + 192944914 192945289 THE1D 372 + 0 370 121114 24 31 23 27 4 5 80 39 41 170 chain 29883 chr2 243199373 + 192995111 192995545 LTR7Y 441 + 0 441 85152 103 9 0 57 68 84 197 chain 4512 chr2 243199373 + 192995564 192995613 HERVH-int 3825 - 3298 3347 197488 49 chain 269677 chr2 243199373 + 192995613 192999178 HERVH-int 3825 + 305 3825 15199 73 0 4 150 313 0 38 1 0 10 1 0 24 28 0 15 0 37 42 2 1 57 1 2 5 0 2 14 0 3 900 10 34 184 0 1 110 0 10 113 0 3 933 9 11 39 0 210 261 7 9 225 chain 6402 chr2 243199373 + 192995948 192996020 HERVH-int 3825 + 461 533 182011 72 chain 5396 chr2 243199373 + 192996020 192996080 HERVH-int 3825 + 472 532 182144 60 chain 3934 chr2 243199373 + 192996085 192996134 HERVH-int 3825 + 532 580 208363 38 1 0 10 chain 29605 chr2 243199373 + 193000403 193000837 LTR7Y 441 + 0 441 86198 98 16 7 55 68 84 197 chain 26202 chr2 243199373 + 193012061 193012353 L1PA5 6144 - 3 295 99191 292 chain 32959 chr2 243199373 + 193086858 193087225 L1PA4 6152 + 5774 6141 79280 367 chain 187911 chr2 243199373 + 193101719 193103801 L1PA4 6152 - 6 2091 20250 504 0 2 431 0 1 1147 chain 26137 chr2 243199373 + 193114399 193114752 THE1A 353 - 0 353 99454 124 1 2 117 14 13 97 chain 558523 chr2 243199373 + 193133158 193139176 L1PA2 6032 - 8 6029 453 334 1 0 4576 2 3 890 0 3 215 chain 28761 chr2 243199373 + 193170846 193171155 AluYa5 310 + 0 304 90065 118 5 0 186 chain 26519 chr2 243199373 + 193184143 193184444 L1PA4 6152 - 872 1173 97977 301 chain 77137 chr2 243199373 + 193184449 193185315 L1PA4 6152 + 5283 6143 44891 5 0 2 810 8 0 43 chain 190563 chr2 243199373 + 193225814 193227930 L1PA3long 6157 + 4042 6157 19994 1225 0 1 39 2 0 850 chain 184956 chr2 243199373 + 193248900 193251119 L1PA6 6164 - 2 2326 20501 582 0 1 211 0 1 51 1 2 270 0 1 469 36 136 543 4 5 52 chain 25634 chr2 243199373 + 193251119 193251409 L1PA6 6164 + 3382 3672 100822 290 chain 28281 chr2 243199373 + 193269779 193270086 AluYk11 308 + 0 307 92002 307 chain 5207 chr2 243199373 + 193318073 193318153 L1PA13 3608 + 612 690 192946 19 2 0 37 0 1 9 2 1 11 chain 61607 chr2 243199373 + 193318164 193318895 L1PA7 6471 + 5723 6453 52076 262 0 1 156 2 0 311 chain 35779 chr2 243199373 + 193327613 193328133 MLT2A2 560 + 0 560 75165 180 1 0 74 4 0 54 14 46 35 13 24 104 2 0 33 0 4 6 chain 4414 chr2 243199373 + 193331424 193331546 L1P4 1494 - 765 887 201745 15 56 55 41 0 1 10 chain 46244 chr2 243199373 + 193352112 193352672 LTR14C 587 + 1 586 61817 381 0 25 179 chain 6805 chr2 243199373 + 193353039 193353118 THE1C-int 1605 + 1421 1500 178918 79 chain 140565 chr2 243199373 + 193353515 193355389 HERVL-int 5654 - 0 1860 26060 371 0 16 49 20 1 18 0 3 340 4 0 109 0 15 51 0 10 131 59 0 98 9 21 205 25 37 385 chain 27721 chr2 243199373 + 193355412 193355707 AluYa5 310 + 10 305 93964 295 chain 18897 chr2 243199373 + 193356423 193356808 MLT2A2 560 + 0 497 130377 168 12 10 14 100 198 12 0 11 42 1 6 36 chain 17120 chr2 243199373 + 193356928 193357144 HERVL-int 5654 + 0 218 135258 204 0 2 12 chain 2640 chr2 243199373 + 193370902 193371022 LTR7 482 + 86 287 231164 15 15 14 17 46 129 22 1 0 4 chain 279470 chr2 243199373 + 193371218 193376232 HERVH-int 3825 + 0 3821 14662 212 0 11 307 1 0 11 1 0 4 0 1 24 1 0 10 1 0 10 4 0 13 7 1 14 3 20 18 24 0 41 0 20 36 31 30 519 1426 0 130 29 20 23 2 1 207 1 6 90 0 1 305 11 16 42 0 4 153 0 2 128 4 7 5 3 0 142 1 0 4 0 1 474 25 29 28 8 218 260 0 2 221 chain 121737 chr2 243199373 + 193372514 193373936 LTR12C 1709 + 0 1709 30463 87 0 3 560 0 278 184 1 0 5 3 1 106 0 4 275 0 5 201 chain 23926 chr2 243199373 + 193377495 193377908 LTR7 482 + 0 482 110769 51 47 35 15 15 14 17 2 53 39 8 40 21 8 7 190 chain 524029 chr2 243199373 + 193388900 193395366 L1PA7 6471 + 0 6456 4764 26 5 6 380 1 0 589 1 2 558 1 0 23 0 1 373 0 3 68 1 0 478 0 1 73 0 2 43 0 1 146 2 0 594 34 10 28 0 2 122 2 1 20 1 5 326 0 2 1201 11 13 252 0 1 6 1 0 265 1 0 515 0 1 319 chain 81444 chr2 243199373 + 193406667 193407653 LTR5_Hs 974 - 0 974 42993 104 2 0 36 5 12 165 11 12 384 18 0 261 chain 5687 chr2 243199373 + 193441069 193441139 Ricksha_c 1012 - 496 566 188232 70 chain 14520 chr2 243199373 + 193452333 193452502 L1PA3long 6157 + 5987 6157 142826 27 0 1 142 chain 29790 chr2 243199373 + 193478796 193479107 AluYb8 318 - 7 318 85505 311 chain 5249 chr2 243199373 + 193494858 193494917 MSTD 398 + 12 71 192526 59 chain 7480 chr2 243199373 + 193497763 193498211 L1MA8 2339 - 91 493 174268 15 2 0 35 50 41 30 9 0 8 248 222 51 chain 73462 chr2 243199373 + 193557305 193558124 L1PA4 6152 + 5322 6141 46805 819 chain 20083 chr2 243199373 + 193562824 193563161 THE1B 368 - 0 368 126880 17 1 0 29 33 54 94 3 2 51 4 5 51 10 21 44 chain 11878 chr2 243199373 + 193567710 193567866 Tigger2 2703 - 135 291 152708 156 chain 6869 chr2 243199373 + 193589099 193589243 MSTC-int 1625 - 18 155 178439 5 0 1 26 34 33 19 7 0 53 chain 36057 chr2 243199373 + 193617956 193618365 L1PA4 6152 - 10 417 74825 103 0 1 284 3 0 19 chain 53001 chr2 243199373 + 193643227 193643912 LTR12_ 688 - 0 687 57016 215 3 1 220 5 9 242 chain 6151 chr2 243199373 + 193672979 193673080 MER61E 571 - 468 571 183977 13 0 1 16 17 18 55 chain 347620 chr2 243199373 + 193698667 193702510 L1PA3long 6157 - 0 3840 11679 2508 3 0 1332 chain 8585 chr2 243199373 + 193702510 193702605 L1PA3long 6157 + 2223 2318 167336 95 chain 28428 chr2 243199373 + 193705758 193706064 AluYa5 310 - 5 310 91477 179 1 0 126 chain 23841 chr2 243199373 + 193714295 193714553 L1PA2 6032 + 5771 6029 111239 258 chain 48500 chr2 243199373 + 193726667 193727192 L1PA2 6032 - 752 1277 60042 525 chain 69536 chr2 243199373 + 193727192 193727938 L1PA2 6032 + 5283 6029 48595 746 chain 112523 chr2 243199373 + 193758184 193759676 SVA_B 1603 + 0 1597 33527 22 15 7 10 1 8 333 128 0 43 0 116 187 8 0 106 1 85 7 0 1 28 0 40 296 0 1 307 chain 24389 chr2 243199373 + 193761980 193762281 AluY 311 + 2 305 108140 130 0 1 19 3 4 149 chain 3695 chr2 243199373 + 193768983 193769025 L1P4a 3072 - 2135 2177 212005 42 chain 19156 chr2 243199373 + 193778514 193778846 THE1B 368 - 0 368 129661 10 2 3 99 31 55 5 3 0 27 1 0 114 21 36 19 chain 33155 chr2 243199373 + 193779742 193780227 LTR10F 562 - 18 562 78980 166 0 1 74 31 37 13 0 52 40 18 18 143 chain 1625 chr2 243199373 + 193780383 193780472 LTR7B 505 + 0 89 122114 89 chain 72084 chr2 243199373 + 193780480 193781273 L1PA3long 6157 + 5364 6157 47444 793 chain 4820 chr2 243199373 + 193781297 193781561 LTR7B 505 + 89 496 122114 19 0 10 53 1 0 4 8 77 26 11 75 51 1 3 34 14 13 42 chain 289387 chr2 243199373 + 193783449 193787034 HERVH-int 3825 + 0 3825 14060 333 1 0 45 0 4 93 0 60 22 28 31 11 0 151 28 1 0 59 0 3 280 0 10 115 0 3 88 1 15 80 9 0 39 1 0 66 1 0 5 1 2 29 5 0 207 0 1 292 24 29 1309 14 19 105 4 0 220 0 2 69 chain 24374 chr2 243199373 + 193789141 193789561 LTR7 482 + 0 477 108226 68 27 47 109 9 41 12 18 15 23 0 9 88 22 21 44 chain 515663 chr2 243199373 + 193789896 193796017 L1PA6 6164 - 3 6160 5601 7 3 0 1251 0 1 576 0 1 884 1 2 97 1 2 1015 4 2 1609 0 35 159 0 2 514 chain 3591 chr2 243199373 + 193817039 193817081 Tigger2a 444 + 307 349 213816 42 chain 8900 chr2 243199373 + 193823572 193823692 LTR12 884 - 597 744 166139 11 0 25 47 0 2 62 chain 20896 chr2 243199373 + 193848576 193848855 L1PA7 6471 + 6182 6467 124291 115 13 19 151 chain 3962 chr2 243199373 + 193851278 193851321 LTR47A 437 - 394 437 207959 43 chain 125529 chr2 243199373 + 193854119 193855544 L1PA4 6152 - 0 1409 29231 253 17 1 1155 chain 138445 chr2 243199373 + 193869870 193871655 L1PA8 5853 - 0 1858 26405 92 2 1 19 2 1 49 5 4 5 1 0 74 2 0 38 7 6 49 2 1 380 0 74 48 0 2 424 10 17 235 2 0 339 chain 118150 chr2 243199373 + 193872304 193873871 THE1A-int 1579 - 5 1579 31750 442 10 11 189 3 5 197 1 2 236 22 19 31 5 7 9 2 3 29 0 1 375 4 6 12 chain 27817 chr2 243199373 + 193873871 193874227 THE1A 353 - 0 353 93643 155 2 0 87 1 0 111 chain 19276 chr2 243199373 + 193889491 193889873 L1MA2 4263 + 198 576 129304 29 0 1 22 0 1 1 4 0 11 6 5 30 38 42 13 5 1 27 1 0 94 30 32 15 2 0 54 chain 495698 chr2 243199373 + 193897238 193902727 L1PA3long 6157 - 0 6151 7089 1649 0 4 110 0 1 1129 0 2 1466 0 1 891 0 128 154 0 526 90 chain 35737 chr2 243199373 + 193904354 193904756 L1PA4 6152 + 5741 6143 75212 402 chain 3552 chr2 243199373 + 193907988 193908028 MSTC 436 - 4 44 214512 40 chain 16766 chr2 243199373 + 193925322 193925502 AluYb8 318 - 1 181 136210 180 chain 61850 chr2 243199373 + 193930026 193930709 L1PA3long 6157 - 0 683 51976 683 chain 135536 chr2 243199373 + 193930811 193932301 L1PA3long 6157 + 3851 5347 26919 8 0 6 1482 chain 26195 chr2 243199373 + 193958159 193958439 AluY 311 + 20 301 99221 106 0 1 174 chain 15809 chr2 243199373 + 194006310 194006733 THE1D 372 + 0 371 138930 54 52 62 49 152 90 116 chain 74493 chr2 243199373 + 194007141 194008113 LTR5_Hs 974 + 0 974 46280 300 5 0 158 0 4 164 10 9 21 0 1 17 3 5 48 1 3 6 2 0 5 0 1 34 7 7 191 chain 4613 chr2 243199373 + 194022880 194023144 MLT1D 503 - 235 501 199477 20 130 134 8 1 0 35 31 36 15 7 1 17 chain 90989 chr2 243199373 + 194035430 194036446 L1HS 6032 + 0 1016 39298 256 1 0 485 0 1 274 chain 10635 chr2 243199373 + 194063392 194063514 L1PA4 6152 - 16 138 157670 122 chain 5057 chr2 243199373 + 194065762 194065855 MLT1A0 366 + 259 348 194567 40 24 20 29 chain 23540 chr2 243199373 + 194069620 194070051 MLT2A2 560 + 0 542 112906 70 2 0 99 69 68 65 2 111 45 0 5 21 14 0 7 1 15 36 chain 135129 chr2 243199373 + 194074617 194076328 L1PA8 5853 - 0 1711 26986 33 3 2 58 1 0 15 6 5 52 2 1 8 1 0 71 2 0 44 1 0 20 0 1 353 1 2 179 5 4 276 6 13 361 1 0 15 1 2 196 chain 564353 chr2 243199373 + 194077146 194083174 L1HS 6032 - 0 6032 227 58 0 4 5970 chain 22770 chr2 243199373 + 194086503 194086800 L1PA7 6471 + 6175 6469 116726 101 0 2 183 5 0 8 chain 68740 chr2 243199373 + 194109891 194110712 L1PA7 6471 - 5 825 48929 180 13 11 381 0 1 247 chain 51767 chr2 243199373 + 194113165 194113794 L1PA7 6471 - 18 649 57777 128 4 5 181 0 1 316 chain 18658 chr2 243199373 + 194139042 194139289 AluY 311 + 38 286 131056 94 0 1 5 5 8 7 3 0 133 chain 289747 chr2 243199373 + 194149198 194153293 L1PB1 5432 - 8 3984 14037 4 1 0 16 1 0 13 9 0 21 1 0 24 2 0 14 8 5 15 30 18 14 1 0 59 2 1 50 3 1 11 176 64 41 24 24 406 25 27 131 8 14 231 0 1 495 0 4 88 17 25 772 1 0 341 6 0 26 0 1 174 15 21 25 1 0 4 0 1 265 5 6 56 0 4 463 chain 74706 chr2 243199373 + 194159516 194160436 L1PA7 6471 - 7 930 46156 157 0 1 175 1 0 332 2 1 174 0 4 79 chain 131506 chr2 243199373 + 194160441 194162257 L1P2 5180 + 904 2704 27746 112 32 29 4 1 0 162 5 0 8 69 74 153 16 15 36 2 1 439 8 9 261 0 2 118 20 7 370 chain 3913 chr2 243199373 + 194188215 194188417 L1ME3A 1206 - 219 412 208650 37 99 93 15 6 0 9 12 17 7 2 0 15 chain 29994 chr2 243199373 + 194212307 194212669 MER41A 554 - 191 554 84826 136 0 1 226 chain 9681 chr2 243199373 + 194232405 194232583 L1PB1 5432 - 159 326 162189 38 1 0 14 2 1 53 2 0 8 5 1 14 3 2 8 1 0 20 1 0 8 chain 37528 chr2 243199373 + 194248177 194248653 LTR12F 595 + 0 594 72780 98 1 120 109 1 0 267 chain 13546 chr2 243199373 + 194250961 194251178 L1PA8 5853 + 5637 5853 146183 36 25 23 42 6 5 17 1 0 54 0 3 36 chain 108646 chr2 243199373 + 194266287 194267683 L1PA8A 6298 - 726 2135 34526 269 15 0 124 13 13 74 1 33 234 3 0 230 0 1 141 0 1 114 6 5 165 2 0 5 chain 54335 chr2 243199373 + 194267683 194268354 L1PA8A 6298 + 5591 6262 55878 671 chain 207905 chr2 243199373 + 194271565 194274246 L1PA8A 6298 + 3574 6291 18645 30 0 1 71 0 1 195 2 0 5 1 0 229 0 14 231 23 26 448 9 7 170 1 2 77 11 51 8 22 0 349 1 2 162 1 0 76 1 4 236 0 2 6 3 1 313 chain 63715 chr2 243199373 + 194276677 194277455 LTR12 884 - 0 884 51136 507 2 0 83 0 1 108 0 107 78 chain 28241 chr2 243199373 + 194286277 194286574 AluYa5 310 - 0 297 92146 297 chain 44218 chr2 243199373 + 194312159 194312683 MER9a3 513 - 0 513 63923 21 10 0 479 1 0 13 chain 39793 chr2 243199373 + 194319020 194319475 HERV9-int 5642 + 4368 4824 69637 447 0 1 8 chain 41695 chr2 243199373 + 194321098 194321652 LTR12_ 688 + 0 670 67033 163 24 7 314 11 144 42 chain 43944 chr2 243199373 + 194336784 194337296 MER9a2 513 + 0 513 64272 155 6 7 351 chain 29485 chr2 243199373 + 194340849 194341363 LTR77 607 + 28 586 86690 12 15 0 17 14 14 75 1 0 122 42 100 133 32 34 51 chain 111452 chr2 243199373 + 194366193 194367698 LTR12C 1709 - 0 1709 33821 82 1 0 374 0 1 24 9 4 99 11 9 8 1 0 112 0 159 277 4 0 69 4 18 7 1 0 67 18 61 38 7 0 8 7 16 19 2 1 256 chain 6036 chr2 243199373 + 194380970 194381035 L1PA5 6144 - 215 280 184925 65 chain 18465 chr2 243199373 + 194381035 194381252 L1PA5 6144 + 5927 6143 131595 60 3 2 154 chain 137145 chr2 243199373 + 194394185 194395771 L1PA6 6164 - 4 1599 26609 341 10 0 7 0 10 343 1 0 139 0 5 432 0 5 313 chain 385788 chr2 243199373 + 194407722 194413205 L1PB1 5432 + 59 5427 10581 24 8 9 31 6 1 68 0 2 211 2 0 139 3 0 6 1 2 11 22 28 142 0 5 144 1 2 193 0 1 4 11 1 33 1 0 11 0 1 275 5 12 136 0 2 9 13 15 314 1 2 189 0 1 64 0 1 345 11 0 30 5 6 129 0 2 182 3 0 301 4 21 47 2 0 22 0 9 23 43 5 468 12 0 33 3 0 193 0 1 76 73 1 5 1 0 388 5 4 193 11 8 65 0 2 98 18 29 55 0 5 42 0 12 91 0 1 62 18 16 28 1 0 12 8 4 5 2 0 53 2 1 15 1 0 44 1 0 16 3 0 6 17 6 19 8 4 15 11 9 15 1 0 9 4 0 10 3 2 13 2 1 13 1 0 5 1 0 4 chain 4085 chr2 243199373 + 194411740 194411787 L1PB1 5432 - 1340 1387 206139 47 chain 7499 chr2 243199373 + 194437102 194437198 MLT1B 390 - 13 108 174165 43 1 0 52 chain 18353 chr2 243199373 + 194455762 194456125 THE1B 368 + 0 368 131929 31 5 0 72 13 14 51 71 81 53 11 10 56 chain 43764 chr2 243199373 + 194461953 194462420 L1HS 6032 + 5554 6021 64492 467 chain 15323 chr2 243199373 + 194462545 194462785 L1MA2 4263 + 1536 1774 140415 6 2 0 25 0 7 6 10 7 137 6 3 12 1 0 35 chain 67524 chr2 243199373 + 194469066 194469849 L1PA5 6144 - 1 788 49433 112 1 0 11 0 3 11 0 1 96 1 0 103 0 1 206 0 1 242 chain 15008 chr2 243199373 + 194470463 194470796 THE1C 375 - 41 362 141298 136 57 47 33 14 15 20 39 36 34 chain 25380 chr2 243199373 + 194471754 194472124 THE1B 368 - 0 368 102784 175 2 0 10 1 0 4 0 1 4 1 2 7 2 0 36 20 21 108 chain 40662 chr2 243199373 + 194479086 194479569 L1PA7 6471 - 1 483 68348 4 1 0 478 chain 3455 chr2 243199373 + 194482089 194482183 LTR40A1 480 - 372 461 216111 13 40 34 4 0 1 37 chain 147417 chr2 243199373 + 194486924 194488582 L1PA5 6144 - 3 1668 24976 627 0 6 820 0 1 211 chain 208773 chr2 243199373 + 194496694 194499024 L1PA5 6144 + 3808 6141 18583 820 1 0 264 0 4 1245 chain 91902 chr2 243199373 + 194512159 194513183 L1PA3long 6157 - 0 1023 38997 20 1 0 1003 chain 146286 chr2 243199373 + 194513192 194514782 L1PA3long 6157 + 3393 4983 25117 1590 chain 8034 chr2 243199373 + 194537848 194537941 L1PA8 5853 + 5760 5853 170841 93 chain 29565 chr2 243199373 + 194538986 194539297 AluYb8 318 - 7 318 86357 311 chain 3359 chr2 243199373 + 194561157 194561218 MLT2C1 407 - 53 115 217889 27 11 12 23 chain 533668 chr2 243199373 + 194569637 194575658 L1PA3long 6157 - 10 6156 3747 75 1 0 53 0 7 9 8 1 3861 0 1 316 1 0 915 0 128 617 12 13 145 3 0 5 chain 20644 chr2 243199373 + 194596843 194597116 AluY 311 + 40 300 125146 93 23 10 157 chain 28775 chr2 243199373 + 194609354 194609663 AluYa5 310 + 0 308 89997 61 1 0 247 chain 9781 chr2 243199373 + 194616773 194616913 L1PB4 2604 - 56 196 161694 46 7 5 9 0 2 78 chain 87684 chr2 243199373 + 194630468 194631455 L1PA4 6152 - 9 993 40498 141 2 0 110 1 0 733 chain 39322 chr2 243199373 + 194631455 194631887 L1PA4 6152 + 4727 5159 70015 432 chain 22329 chr2 243199373 + 194647466 194647786 L1PA8 5853 - 0 314 118780 4 0 1 89 1 0 15 1 0 51 0 1 11 1 0 36 2 0 27 14 12 46 1 0 21 chain 36723 chr2 243199373 + 194659855 194660252 L1PA3long 6157 - 0 397 73925 397 chain 168176 chr2 243199373 + 194685228 194687070 L1PA2 6032 + 4180 6032 22265 509 0 5 1172 3 8 158 chain 521280 chr2 243199373 + 194695608 194701728 L1PA5 6144 - 12 6141 5031 40 0 1 806 1 0 729 0 1 274 0 2 183 0 1 844 0 1 830 9 12 94 0 2 106 0 1 614 0 4 417 9 0 440 0 1 4 1 0 113 1 2 399 5 6 187 0 1 14 chain 17124 chr2 243199373 + 194720856 194721189 L1PB1 5432 + 5103 5419 135248 11 1 0 24 1 0 9 27 20 53 2 1 59 1 0 16 14 1 30 2 0 5 1 0 14 0 13 11 1 0 21 1 0 13 1 0 15 chain 163249 chr2 243199373 + 194742061 194743894 L1PA4 6152 - 5 1860 22913 20 0 16 219 0 1 162 0 1 420 0 4 1012 chain 142002 chr2 243199373 + 194768605 194770260 L1P1 4361 + 1 1637 25821 47 1 0 655 1 0 35 0 1 67 22 4 87 0 1 327 1 0 412 chain 54108 chr2 243199373 + 194782064 194782667 L1PA4 6152 - 1 606 56289 310 0 1 214 0 1 79 chain 32395 chr2 243199373 + 194782667 194783029 L1PA4 6152 + 5187 5553 80199 117 0 4 245 chain 18041 chr2 243199373 + 194830036 194830417 THE1C 375 + 0 375 132757 140 4 8 16 43 41 11 35 31 67 32 29 6 1 0 26 chain 11795 chr2 243199373 + 194835129 194835313 MER30 238 - 0 200 153067 49 3 0 58 4 0 6 9 32 55 chain 196441 chr2 243199373 + 194841742 194844092 L1PA7 6471 + 4094 6461 19469 1098 0 4 428 0 8 15 0 1 280 0 3 400 0 1 129 chain 27180 chr2 243199373 + 194845186 194845588 LOR1b 457 + 55 450 95660 58 28 24 11 6 4 129 5 4 165 chain 3980 chr2 243199373 + 194862328 194862373 L1PA4 6152 + 6106 6151 207679 45 chain 27908 chr2 243199373 + 194866931 194867277 LTR12C 1709 - 713 1059 93332 4 0 1 154 1 0 187 chain 20123 chr2 243199373 + 194873095 194873458 THE1B 368 - 0 368 126761 103 2 1 24 68 71 46 14 16 54 0 1 52 chain 114974 chr2 243199373 + 194874680 194875987 L1P1 4361 - 302 1610 32801 882 0 1 425 chain 42924 chr2 243199373 + 194875988 194876462 L1PA5 6144 + 5661 6135 65511 474 chain 15376 chr2 243199373 + 194885355 194885544 LTR12C 1709 + 932 1168 140275 139 0 47 50 chain 5779 chr2 243199373 + 194885632 194885698 LTR12C 1709 + 652 718 187365 66 chain 72614 chr2 243199373 + 194887309 194888401 MER11A 1151 - 0 1151 47208 142 3 5 18 2 3 62 0 1 35 17 0 23 43 0 26 0 26 129 1 2 140 0 1 92 7 8 144 4 0 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chain 40762 chr2 243199373 + 195399479 195399946 L1PA4 6152 + 5675 6141 68222 223 2 1 242 chain 95006 chr2 243199373 + 195405987 195407165 L1PA7 6471 - 2567 3758 38002 140 0 3 185 0 5 69 1 2 398 1 5 384 chain 200118 chr2 243199373 + 195407165 195409719 L1PA7 6471 + 3942 6468 19199 57 0 1 488 22 23 444 1 0 30 0 1 129 2 0 382 25 1 204 6 1 25 0 1 91 0 1 462 4 5 163 0 1 7 3 0 9 chain 3109 chr2 243199373 + 195410434 195410478 L1MA5 2750 + 2188 2231 222758 37 1 0 6 chain 16012 chr2 243199373 + 195441659 195441882 AluSg7 307 + 55 275 138325 77 3 0 5 18 18 120 chain 9314 chr2 243199373 + 195477633 195477734 AluYb8 318 - 6 107 163999 101 chain 66746 chr2 243199373 + 195494569 195495428 L1PA6 6164 + 5309 6160 49756 346 9 6 331 1 2 9 7 0 6 15 22 119 6 0 10 chain 486255 chr2 243199373 + 195503853 195509627 L1PA6 6164 + 352 6158 7510 157 2 1 715 4 3 342 16 15 91 0 1 141 1 2 499 6 7 858 0 1 4 0 1 112 1 2 219 1 0 842 0 8 296 0 1 55 0 1 36 0 1 8 0 22 658 3 0 707 chain 8227 chr2 243199373 + 195557558 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28567 chr2 243199373 + 196031315 196031614 AluYf4 310 - 11 310 90887 299 chain 6792 chr2 243199373 + 196038740 196038830 MER2 342 + 100 193 179005 14 0 2 32 0 1 44 chain 95451 chr2 243199373 + 196040940 196042063 L1PA6 6164 - 2 1132 37970 8 0 6 208 0 1 907 chain 20562 chr2 243199373 + 196044307 196044667 THE1D 372 - 0 372 125423 127 14 14 18 8 9 11 30 31 24 4 0 6 0 4 53 4 14 61 chain 49430 chr2 243199373 + 196046465 196047006 L1PA3long 6157 - 0 542 59435 155 0 1 386 chain 31737 chr2 243199373 + 196047006 196047348 L1PA3long 6157 + 5272 5614 81267 342 chain 22497 chr2 243199373 + 196051831 196052077 L1HS 6032 + 5784 6030 118037 246 chain 158021 chr2 243199373 + 196054917 196056700 L1PA5 6144 + 4355 6137 23589 1168 1 0 287 1 2 220 1 0 105 chain 35657 chr2 243199373 + 196068909 196069334 L1P1 4361 - 20 442 75324 12 2 1 23 1 0 157 1 0 229 chain 257672 chr2 243199373 + 196088736 196091724 L1P1 4361 + 1355 4341 15831 271 3 5 393 1 0 436 0 1 1423 1 0 267 1 0 154 1 0 23 2 1 12 chain 537755 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0 1 316 0 3 49 1 0 13 3 17 31 21 28 87 3 0 84 1 6 78 22 17 132 3 0 22 0 5 77 0 1 176 8 9 190 chain 3799 chr2 243199373 + 196567642 196567684 HSMAR2 1300 - 1255 1297 210409 42 chain 24321 chr2 243199373 + 196604704 196605008 AluSp 311 - 9 311 108539 174 1 0 17 1 0 111 chain 41950 chr2 243199373 + 196607587 196608129 MLT2A2 560 + 8 560 66684 7 0 4 88 2 1 86 1 4 352 0 4 6 chain 550970 chr2 243199373 + 196608607 196614716 L1PA3long 6157 + 9 6157 1317 523 0 15 22 4 0 1284 0 5 150 0 1 258 0 2 305 0 2 601 1 0 38 1 0 251 0 11 243 0 3 339 0 1 1062 0 1 184 0 4 843 chain 19737 chr2 243199373 + 196684908 196685185 L1PA8 5853 + 5582 5853 127990 27 2 0 69 2 1 14 6 5 41 3 2 21 1 0 91 chain 22914 chr2 243199373 + 196731500 196731842 THE1B 368 + 1 368 116037 39 0 15 52 2 3 62 1 0 26 35 45 125 chain 24184 chr2 243199373 + 196736427 196736683 AluYa5 310 + 54 310 109305 256 chain 12004 chr2 243199373 + 196781107 196781276 MER50 708 + 0 156 152182 47 8 0 10 6 0 48 0 1 50 chain 19848 chr2 243199373 + 196783715 196783976 AluSc5 308 + 23 295 127662 100 1 0 115 0 11 23 6 7 16 chain 106903 chr2 243199373 + 196784816 196786458 L1PB1 5432 + 3840 5423 35002 13 0 9 61 2 0 201 8 0 115 0 1 369 0 4 15 5 2 7 0 1 143 0 1 15 8 9 6 0 2 65 0 1 223 47 11 24 1 0 4 34 27 51 2 1 16 1 0 39 47 35 15 25 20 18 0 1 5 1 0 23 1 0 11 1 0 15 1 0 4 chain 167284 chr2 243199373 + 196795928 196797856 L1PA4 6152 - 777 2715 22359 49 0 1 22 1 5 946 0 4 141 5 6 47 1 4 156 11 8 549 chain 68830 chr2 243199373 + 196797856 196798621 L1PA4 6152 + 5372 6139 48851 156 0 2 609 chain 137333 chr2 243199373 + 196804574 196806296 L1PA8 5853 + 4172 5853 26583 575 3 0 50 1 0 189 19 23 512 0 1 42 1 0 44 2 0 70 2 1 15 1 0 46 2 1 16 40 4 92 chain 483781 chr2 243199373 + 196812015 196818464 L1PA7 6471 - 5 5810 7596 7 8 0 81 0 1 4 1 0 51 0 1 4 2 1 692 0 2 667 1 0 275 0 4 186 313 0 103 1 0 64 2 4 366 0 1 22 2 0 53 2 0 48 1 0 167 2 0 56 2 0 83 323 0 26 6 4 120 4 0 491 0 4 170 0 4 58 1 4 586 0 4 232 2 0 66 1 0 400 0 1 647 5 0 45 chain 129334 chr2 243199373 + 196818764 196820216 L1PA5 6144 - 12 1467 28233 101 1 0 730 0 4 620 chain 7516 chr2 243199373 + 196855404 196855499 L1MA6 2487 - 1096 1191 174061 95 chain 126019 chr2 243199373 + 196895138 196896704 THE1A-int 1579 - 0 1579 29093 396 6 7 519 0 3 197 20 29 428 chain 11569 chr2 243199373 + 196909038 196909307 L1PB1 5432 + 5178 5422 154026 42 3 2 15 1 0 42 1 0 8 34 21 18 3 1 5 1 0 12 6 4 22 1 0 13 10 9 12 1 0 10 1 0 8 chain 22359 chr2 243199373 + 196916216 196916477 AluY 311 + 0 269 118671 17 0 7 108 0 1 136 chain 3288 chr2 243199373 + 196917010 196917047 LTR41 747 + 572 609 219216 37 chain 33467 chr2 243199373 + 196941263 196942626 L1PB2 3958 - 120 587 78465 63 1 0 22 2 0 67 6 5 9 888 0 55 1 0 72 1 0 89 1 0 5 3 0 12 0 2 66 chain 524133 chr2 243199373 + 196953925 196960033 L1PA5 6144 + 0 6144 4754 121 0 14 21 0 12 139 0 7 158 1 0 337 17 0 8 1 18 193 1 2 4 1 0 135 9 0 60 1 0 369 0 1 242 0 1 466 8 0 855 0 1 6 1 2 72 0 3 239 0 4 1141 0 2 171 6 5 5 0 1 50 1 0 256 0 5 167 1 5 226 0 1 619 chain 24399 chr2 243199373 + 196979267 196979618 L1PA8 5853 - 0 345 108082 92 2 1 19 3 2 40 7 6 14 2 1 33 0 1 36 2 0 46 1 0 29 0 1 17 1 0 7 chain 9684 chr2 243199373 + 196988073 196988226 LTR19C 757 - 0 149 162179 78 15 13 51 2 0 7 chain 17865 chr2 243199373 + 197101942 197102351 L1PB1 5432 - 13 390 133203 15 1 0 8 6 5 21 1 0 17 0 1 6 2 0 14 9 6 17 39 27 45 1 0 12 9 8 49 2 0 9 5 1 14 1 0 6 1 0 23 5 0 10 12 13 45 0 1 4 chain 61652 chr2 243199373 + 197142158 197142858 L1PA5 6144 + 5442 6140 52057 334 2 0 364 chain 36981 chr2 243199373 + 197147063 197147666 MER4B 649 - 8 649 73531 8 1 0 71 1 0 33 1 11 34 32 33 25 6 0 8 2 0 44 0 9 53 3 4 119 2 0 26 25 55 24 2 1 83 chain 20046 chr2 243199373 + 197163227 197163456 L1PA5 6144 - 4 230 126988 205 3 0 21 chain 175881 chr2 243199373 + 197166113 197168546 L1PA11 4918 - 287 2650 21363 20 60 44 13 1 0 9 57 44 13 1 0 14 2 0 72 14 11 66 20 10 184 1 0 4 1 2 201 4 0 140 0 10 9 40 2 254 2 0 188 0 5 528 0 7 411 3 1 101 chain 23018 chr2 243199373 + 197191172 197191454 AluSc5 308 - 15 297 115543 282 chain 24188 chr2 243199373 + 197238512 197238773 AluYa5 310 + 38 299 109286 261 chain 129418 chr2 243199373 + 197257513 197259035 L1PA5 6144 + 4617 6144 28220 293 1 9 167 5 1 207 2 0 305 0 1 290 0 6 86 11 7 155 chain 4437 chr2 243199373 + 197273757 197273808 MER63B 433 + 309 360 201500 51 chain 555441 chr2 243199373 + 197386208 197392224 L1PA2 6032 - 3 6028 777 824 0 1 18 0 4 532 0 1 311 0 3 4331 chain 48700 chr2 243199373 + 197396785 197397362 L1PA7 6471 + 5893 6467 59959 568 3 0 6 chain 36218 chr2 243199373 + 197402302 197402783 MER41C 542 + 0 531 74605 49 0 1 261 28 77 143 chain 27070 chr2 243199373 + 197418780 197419062 AluYd8 298 + 0 282 96036 282 chain 22608 chr2 243199373 + 197435161 197435432 L1PA6 6164 + 5891 6159 117551 76 1 0 187 2 0 5 chain 21238 chr2 243199373 + 197459796 197460065 L1PA7 6471 + 6197 6460 123061 97 10 4 162 chain 23759 chr2 243199373 + 197475413 197475784 THE1C 375 - 0 375 111715 25 1 0 112 1 2 37 12 14 68 24 13 58 0 12 11 0 1 22 chain 25910 chr2 243199373 + 197475805 197476157 THE1A 353 + 0 353 100374 24 13 14 71 2 1 140 0 1 102 chain 4326 chr2 243199373 + 197488459 197488559 L1MEf 1413 + 173 253 202875 47 40 20 13 chain 12137 chr2 243199373 + 197498908 197499059 MER6A 605 + 369 520 151665 151 chain 17070 chr2 243199373 + 197527045 197527289 MER1B 344 - 0 241 135404 58 18 19 47 4 0 117 chain 10856 chr2 243199373 + 197535795 197536133 L1MC1 2226 - 42 332 156759 32 63 35 12 2 0 12 67 54 44 2 0 17 3 0 10 8 9 45 1 0 20 chain 36321 chr2 243199373 + 197552709 197553252 L1PA13 3608 - 120 657 74477 22 1 0 18 14 10 30 14 12 5 1 0 56 1 0 62 5 4 84 0 3 54 1 0 108 0 2 67 chain 42104 chr2 243199373 + 197554270 197554755 L1P1 4361 - 20 502 66495 12 2 1 23 1 0 155 1 0 291 chain 31543 chr2 243199373 + 197554755 197555116 L1PA3long 6157 + 5803 6157 81579 198 12 5 151 chain 29881 chr2 243199373 + 197556845 197557157 AluYb9 318 - 6 318 85164 312 chain 18828 chr2 243199373 + 197563426 197563638 L1PA4 6152 - 11 223 130582 212 chain 507887 chr2 243199373 + 197569279 197575359 L1PA6 6164 - 2 6164 6333 329 2 1 65 10 9 137 1 0 305 0 7 114 4 0 547 0 15 69 23 40 152 0 8 365 4 3 90 0 2 4 0 1 392 0 4 203 1 0 416 3 0 49 1 8 498 5 6 500 0 3 16 0 1 300 1 0 4 0 1 674 0 17 342 6 5 62 0 13 196 2 0 102 5 6 81 chain 314322 chr2 243199373 + 197602393 197607180 L1PA11 4918 - 473 4910 12835 37 6 5 8 1 0 78 0 4 38 15 14 346 1 0 68 5 0 9 0 5 66 39 40 193 0 4 157 0 3 51 0 2 76 1 5 32 0 15 37 16 17 211 0 3 349 0 1 291 0 3 5 11 24 34 3 0 26 2 1 120 6 5 15 1 0 128 1 2 99 2 3 208 0 4 247 0 7 54 409 0 83 0 1 168 1 4 157 137 5 185 0 3 55 0 139 12 17 18 246 17 14 25 1 0 52 19 16 32 3 0 38 2 0 26 1 0 8 chain 10269 chr2 243199373 + 197605493 197605613 L1PA11 4918 - 2731 2851 159293 120 chain 13915 chr2 243199373 + 197609114 197609287 L1P1 4361 - 20 191 144871 12 2 1 23 1 0 135 chain 3453 chr2 243199373 + 197614534 197614572 MADE1 96 - 58 96 216151 38 chain 30245 chr2 243199373 + 197614632 197614948 AluYb8 318 - 2 318 84073 316 chain 466636 chr2 243199373 + 197617363 197623060 L1PA7 6471 - 3 5724 8168 329 0 2 229 1 0 181 4 5 76 22 25 34 0 7 45 0 1 120 0 1 122 9 1 62 1 0 291 0 2 275 0 1 399 0 3 5 3 0 41 3 0 373 11 11 274 0 4 52 1 0 11 5 7 108 5 6 148 2 0 22 3 0 95 0 4 35 0 4 97 1 0 319 0 2 512 0 9 717 0 1 165 0 4 18 0 4 293 1 0 13 15 15 72 1 0 28 17 10 31 chain 22843 chr2 243199373 + 197636999 197637273 AluSp 311 + 0 283 116378 52 0 9 222 chain 189982 chr2 243199373 + 197676990 197679305 L1PA7 6471 + 4145 6469 20048 66 3 0 5 2 1 40 1 2 366 1 0 49 0 4 323 10 13 600 0 3 26 0 1 55 1 3 603 14 14 150 chain 77751 chr2 243199373 + 197681550 197682917 MER11A 1151 - 5 1144 44634 16 0 1 157 0 1 110 44 1 11 1 27 47 322 0 95 0 1 132 0 7 8 0 3 84 15 17 39 0 1 94 5 1 139 0 99 48 chain 4950 chr2 243199373 + 197695086 197695147 LTR71A 459 - 0 61 195708 61 chain 35425 chr2 243199373 + 197696301 197696757 LTR71A 459 - 0 458 75648 257 0 1 91 11 12 97 chain 25567 chr2 243199373 + 197696797 197697119 AluY 311 + 1 309 101886 117 7 0 14 0 1 112 8 0 64 chain 5180 chr2 243199373 + 197719365 197719453 MER101-int 1169 + 632 721 193226 14 14 15 60 chain 10659 chr2 243199373 + 197721616 197721748 L1PREC2 3366 - 772 910 157573 8 0 6 124 chain 17934 chr2 243199373 + 197721755 197721967 L1PREC2 3366 + 2206 2418 133023 212 chain 83382 chr2 243199373 + 197726391 197727445 MER11C 1089 + 0 1063 42165 184 0 1 4 1 0 61 0 1 66 0 4 96 0 2 130 17 18 24 6 4 95 0 4 5 1 0 38 0 1 182 1 0 143 chain 151029 chr2 243199373 + 197730525 197732358 L1PA7 6471 + 4633 6465 24471 5 0 3 52 0 1 82 0 1 178 1 0 7 1 3 361 5 6 282 0 1 95 0 2 5 21 4 89 1 3 244 0 8 393 4 0 7 chain 64826 chr2 243199373 + 197746877 197747877 L1PA13 3608 - 60 1025 50648 7 2 0 7 1 0 9 52 37 22 7 6 12 8 4 45 7 4 4 1 0 55 1 0 63 3 1 103 16 15 26 25 24 37 2 0 327 1 0 157 chain 23959 chr2 243199373 + 197764478 197764783 AluSq2 311 + 3 305 110574 122 3 0 180 chain 567981 chr2 243199373 + 197770311 197776343 L1HS 6032 + 0 6032 26 6032 chain 53199 chr2 243199373 + 197810168 197810825 L1PA6 6164 - 2 638 56894 13 3 0 96 1 0 30 1 0 77 25 0 394 0 9 17 chain 39973 chr2 243199373 + 197820199 197820839 MER4A 717 + 30 619 69357 34 0 1 20 5 6 39 80 0 150 1 0 4 0 1 61 0 7 124 8 28 114 chain 2333 chr2 243199373 + 197821950 197821978 MER4A 717 + 449 477 234943 28 chain 2505 chr2 243199373 + 197822003 197822035 MER4A 717 + 522 560 233087 26 0 6 6 chain 10850 chr2 243199373 + 197829892 197830106 L1MA3 4352 + 4156 4352 156780 79 14 10 14 2 0 23 1 0 5 7 1 29 1 0 11 6 2 11 1 0 5 0 1 5 chain 30829 chr2 243199373 + 197847520 197847916 L1PA8 5853 + 5463 5853 82816 101 1 0 44 2 0 71 1 0 8 1 4 5 3 0 48 1 0 16 1 0 93 chain 24576 chr2 243199373 + 197862176 197862472 AluSp 311 - 15 311 107101 296 chain 67905 chr2 243199373 + 197885523 197886365 L1PA6 6164 - 2 839 49284 6 4 0 162 1 2 331 9 6 256 0 1 73 chain 22321 chr2 243199373 + 197893719 197893970 L1PA5 6144 - 14 265 118820 251 chain 5510 chr2 243199373 + 197905482 197905717 LTR37B 484 + 258 484 189945 38 88 87 15 50 42 44 chain 96670 chr2 243199373 + 197912919 197914037 L1PA6 6164 - 3 1132 37651 563 0 1 18 0 1 24 0 3 231 0 5 190 0 1 92 chain 481144 chr2 243199373 + 197927211 197933098 L1HS 6032 + 128 6032 7688 14 12 25 65 12 24 318 0 1 122 0 7 61 126 13 71 0 1 4 1 0 583 0 2 752 1 0 739 0 4 115 1 0 46 0 1 233 39 50 891 0 7 628 0 1 82 0 73 971 chain 91342 chr2 243199373 + 197933143 197934181 L1PA5 6144 + 5089 6142 39179 147 0 4 97 0 10 120 0 2 415 2 1 257 chain 45131 chr2 243199373 + 197950078 197950624 MER41A 554 + 0 547 62894 92 0 1 454 chain 4691 chr2 243199373 + 197991502 197991560 MADE1 96 + 7 91 198619 17 0 26 41 chain 7925 chr2 243199373 + 198005376 198005602 L1MA10 1535 + 1329 1503 171483 59 52 25 19 28 15 22 14 2 32 chain 40843 chr2 243199373 + 198007926 198008371 L1PA3long 6157 - 0 445 68111 445 chain 24585 chr2 243199373 + 198073247 198073552 AluY 311 + 11 311 107059 18 6 0 103 0 1 178 chain 12858 chr2 243199373 + 198110014 198110201 MER2 342 + 141 329 148809 146 14 15 27 chain 124559 chr2 243199373 + 198124810 198126190 L1PA4 6152 - 1 1389 29520 140 0 1 185 0 1 468 0 6 587 chain 17748 chr2 243199373 + 198154914 198155138 L1P5 443 - 217 440 133572 218 1 0 5 chain 63298 chr2 243199373 + 198156410 198157157 L1PA6 6164 - 10 756 51323 322 1 0 424 chain 27705 chr2 243199373 + 198164035 198164547 L1PB1 5432 + 4942 5427 94022 49 0 3 109 13 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 43 41 29 18 20 19 25 1 0 22 1 0 12 1 0 18 2 0 5 chain 25323 chr2 243199373 + 198195580 198195956 THE1D 372 - 0 372 103109 179 26 28 87 5 6 17 9 0 40 0 2 13 chain 22276 chr2 243199373 + 198216876 198217174 AluSq2 311 + 1 296 119015 136 13 11 131 5 4 13 chain 111027 chr2 243199373 + 198235122 198236490 LTR12C 1709 + 0 1709 33925 21 0 9 232 0 1 36 1 2 163 3 5 49 0 1 90 0 1 44 0 119 64 1 0 138 0 216 33 11 4 390 8 7 84 chain 12180 chr2 243199373 + 198257486 198257646 L1PA8 5853 + 5692 5850 151492 48 2 1 19 2 1 89 chain 19516 chr2 243199373 + 198287042 198287288 L1PA5 6144 + 5896 6142 128610 189 0 4 46 4 0 7 chain 21963 chr2 243199373 + 198308845 198309130 AluY 311 + 26 305 120381 97 2 0 10 4 1 135 8 7 29 chain 24046 chr2 243199373 + 198312019 198312307 AluSp 311 + 5 298 110067 271 1 6 16 chain 8801 chr2 243199373 + 198312468 198312575 U6 107 + 0 107 166636 107 chain 7188 chr2 243199373 + 198315654 198316044 LTR12D 1347 + 587 1075 176161 77 289 387 24 chain 29315 chr2 243199373 + 198316785 198317095 AluYf4 310 - 0 310 87471 310 chain 9925 chr2 243199373 + 198320712 198320906 L1MA5A 2387 + 2014 2195 160951 19 1 0 6 13 6 24 1 0 35 4 3 43 17 15 22 1 0 8 chain 23757 chr2 243199373 + 198332123 198332400 AluSp 311 - 34 311 111728 277 chain 11915 chr2 243199373 + 198337007 198337152 MER107 203 + 1 145 152533 95 2 1 48 chain 47815 chr2 243199373 + 198347958 198348550 LTR10C 591 + 4 591 60612 30 2 0 226 6 0 53 0 1 196 0 2 79 chain 5554 chr2 243199373 + 198366937 198367077 MER30 238 + 75 238 189527 16 47 67 27 5 8 45 chain 81828 chr2 243199373 + 198385856 198386896 MER11C 1089 - 26 1089 42829 325 0 1 38 1 0 5 0 4 114 27 0 9 7 35 146 1 0 68 1 5 58 0 9 21 0 5 22 0 1 197 chain 13641 chr2 243199373 + 198413203 198413359 L1PA4 6152 + 5996 6151 145813 144 1 0 11 chain 20769 chr2 243199373 + 198425279 198425566 AluSp 311 - 11 301 124719 60 9 5 92 9 16 117 chain 343958 chr2 243199373 + 198427235 198431232 L1PA6 6164 - 3 4037 11783 7 3 0 137 1 2 407 0 11 282 2 0 20 0 2 103 0 6 436 0 1 854 0 7 63 0 1 274 3 4 300 0 4 50 0 1 344 0 1 518 5 6 33 0 5 155 chain 5527 chr2 243199373 + 198439631 198439694 THE1B-int 1605 + 1528 1591 189777 63 chain 25383 chr2 243199373 + 198439707 198440066 THE1B 368 + 0 363 102769 169 1 0 19 9 12 14 0 4 12 1 0 9 5 4 120 chain 30630 chr2 243199373 + 198441585 198442031 MER4A1 472 + 0 472 83157 162 1 2 39 12 49 12 23 11 197 chain 268725 chr2 243199373 + 198443500 198447246 HERVH-int 3825 + 0 3825 15248 162 0 1 88 31 31 51 1 0 77 9 8 27 4 32 8 47 0 28 0 265 456 43 13 184 9 0 176 7 6 78 0 27 132 5 4 236 0 5 241 1 3 5 2 0 378 0 9 243 166 1 40 1 0 810 chain 91653 chr2 243199373 + 198448354 198449400 L1PA5 6144 - 0 1065 39068 149 0 1 194 0 1 403 0 13 82 0 4 218 chain 14044 chr2 243199373 + 198453977 198454175 THE1B 368 + 174 368 144403 19 1 5 19 8 1 76 1 0 74 chain 15814 chr2 243199373 + 198455924 198456193 LTR12C 1709 - 506 781 138914 19 60 67 9 1 0 180 chain 23166 chr2 243199373 + 198462250 198462541 AluSp 311 - 19 311 114830 75 4 5 212 chain 45780 chr2 243199373 + 198467417 198467944 L1PA4 6152 + 5611 6151 62249 477 0 13 50 chain 90159 chr2 243199373 + 198471201 198472199 L1PA4 6152 + 5138 6136 39589 998 chain 295046 chr2 243199373 + 198473363 198476848 L1PA6 6164 - 2 3517 13702 9 0 2 325 1 0 247 0 1 269 0 1 169 0 15 247 0 1 152 0 1 357 0 4 711 0 1 349 0 1 110 0 1 479 0 3 60 chain 151265 chr2 243199373 + 198482775 198484476 SVA_D 2077 + 0 2071 24438 724 0 3 21 16 13 126 0 83 58 0 47 138 1 0 17 1 243 586 1 0 12 chain 82404 chr2 243199373 + 198487380 198489780 Tigger1 2417 + 1013 2164 42585 196 0 1 108 0 1 61 0 3 75 0 1 77 0 1 210 9 8 40 0 3 30 643 0 194 670 56 17 1 0 69 chain 25317 chr2 243199373 + 198489046 198489349 AluY 311 + 5 310 103135 103 1 2 22 0 1 177 chain 50630 chr2 243199373 + 198493725 198494330 L1PA6 6164 + 5561 6162 58558 414 1 2 5 1 0 174 4 0 6 chain 48503 chr2 243199373 + 198499467 198500000 L1PA2 6032 - 8 541 60107 533 chain 500214 chr2 243199373 + 198500000 198505485 L1HS 6032 - 541 6032 6826 826 1 0 1531 0 2 2395 0 1 164 0 4 568 chain 12601 chr2 243199373 + 198530022 198530205 L1MA4A 3247 - 2965 3148 149833 60 0 3 7 16 13 100 chain 120541 chr2 243199373 + 198546868 198548340 L1PA8 5853 - 0 1463 30862 92 5 4 16 2 1 52 1 0 9 1 0 67 10 8 42 1 0 551 3 1 620 chain 15188 chr2 243199373 + 198551178 198552163 L1PB2 3958 - 140 1096 26478 19 19 0 7 0 2 15 1 0 22 2 0 38 1 0 4 0 1 29 1 0 64 1 0 72 1 0 93 4 0 8 7 5 65 6 0 13 0 3 49 2 0 90 15 19 112 0 2 159 12 11 54 chain 556679 chr2 243199373 + 198552256 198558285 L1PA2 6032 - 1 6032 648 12 2 0 5447 0 4 568 chain 22794 chr2 243199373 + 198558294 198558573 AluSp 311 - 37 311 116608 167 1 0 43 4 0 64 chain 23761 chr2 243199373 + 198558589 198560130 L1PB2 3958 - 1096 2304 26478 53 3 2 262 10 21 48 3 0 33 0 4 127 325 0 45 7 9 185 14 25 199 14 4 17 24 0 52 8 6 81 0 4 31 chain 170233 chr2 243199373 + 198560177 198562182 SVA_D 2077 - 21 2071 22022 617 0 1 37 4 0 13 74 0 48 1 0 18 0 79 136 0 1 68 0 2 38 0 1 4 1 0 32 0 1 10 12 54 687 1 0 178 1 0 25 chain 4637 chr2 243199373 + 198560848 198560922 SVA_D 2077 - 918 992 105120 74 chain 91301 chr2 243199373 + 198562391 198563651 L1PBa 3878 - 767 2157 39194 6 0 1 68 3 2 40 0 2 186 0 6 88 1 0 4 0 1 112 0 4 13 5 6 37 10 9 53 2 114 278 1 2 44 0 1 77 10 9 51 0 5 171 chain 47384 chr2 243199373 + 198563745 198564299 L1PA5 6144 - 9 563 60910 145 6 5 341 0 1 62 chain 5584 chr2 243199373 + 198566559 198566630 L1MB5 1630 - 371 442 189233 71 chain 19803 chr2 243199373 + 198574085 198574453 LTR7 482 - 37 481 127803 12 13 14 52 1 2 59 0 4 41 5 37 44 1 52 13 15 14 15 31 19 66 chain 9414 chr2 243199373 + 198577910 198578037 MER85 139 - 0 139 163491 40 0 10 28 0 3 5 1 0 53 chain 20546 chr2 243199373 + 198582147 198582441 AluSq10 312 + 15 278 125486 113 0 1 67 33 1 81 chain 22710 chr2 243199373 + 198583088 198583396 AluY 311 + 6 311 117030 12 1 0 27 7 8 79 0 1 68 4 0 110 chain 526695 chr2 243199373 + 198593686 198599688 L1PA4 6152 + 1 6151 4529 153 0 1 125 0 11 289 4 5 123 12 5 48 11 139 2235 0 5 2541 0 4 292 18 23 151 chain 46493 chr2 243199373 + 198605618 198606131 L1PA4 6152 - 1414 1927 61261 513 chain 49886 chr2 243199373 + 198606131 198606699 L1PA4 6152 + 4735 5298 59097 516 6 1 46 chain 76896 chr2 243199373 + 198606699 198607547 L1PA4 6152 + 5302 6151 45029 841 0 1 7 chain 517590 chr2 243199373 + 198612733 198619018 L1PA7 6471 + 59 6468 5412 150 1 0 4 0 1 23 7 22 30 12 13 99 3 2 80 0 1 125 18 17 856 0 1 10 0 3 321 6 5 57 0 1 101 6 95 328 0 1 57 0 1 5 2 1 171 0 1 811 4 5 46 2 0 46 0 4 441 13 8 383 0 1 188 1 0 4 0 1 67 7 0 25 6 10 713 0 15 212 0 3 844 chain 11649 chr2 243199373 + 198629796 198630052 L1PB1 5432 + 5197 5427 153701 23 2 1 15 1 0 45 1 0 15 25 12 19 11 8 11 2 0 13 0 8 7 9 0 17 1 0 13 1 0 15 1 0 4 1 0 4 chain 3968 chr2 243199373 + 198630097 198630142 L1MA5A 2387 + 2251 2296 207873 45 chain 60607 chr2 243199373 + 198633453 198634167 L1PA5 6144 - 2069 2783 52517 185 1 0 57 4 5 467 chain 178201 chr2 243199373 + 198634175 198636230 L1PA5 6144 + 4082 6144 21145 249 0 1 463 0 5 201 1 0 114 1 2 177 1 0 516 0 1 320 1 2 11 chain 15188 chr2 243199373 + 198653252 198653455 MER30 238 - 0 238 140808 107 8 27 55 0 16 33 chain 40263 chr2 243199373 + 198653896 198654393 L1PA6 6164 - 3 492 68924 7 2 0 135 3 0 37 1 0 5 1 2 165 3 0 138 chain 121306 chr2 243199373 + 198660417 198661953 THE1C-int 1605 - 16 1589 30600 419 2 0 497 1 0 215 28 59 66 0 6 117 0 3 191 chain 6325 chr2 243199373 + 198693836 198693914 MER53 195 - 117 195 182590 78 chain 414841 chr2 243199373 + 198694803 198700025 L1PA7 6471 + 1362 6466 9674 798 0 5 353 6 5 540 8 10 82 7 14 24 0 6 223 2 1 4 0 1 18 0 1 339 0 3 463 189 8 179 0 5 42 1 2 119 6 8 24 1 0 143 0 12 417 0 1 139 0 12 65 0 1 185 0 3 679 11 14 108 0 1 47 chain 25594 chr2 243199373 + 198700922 198701199 AluYa5 310 + 35 310 101758 88 2 0 187 chain 157580 chr2 243199373 + 198769816 198771741 L1PA8 5853 - 0 1951 23649 93 1 0 19 2 1 38 26 24 68 11 9 37 1 0 291 0 27 235 0 2 199 0 1 168 0 7 52 4 1 471 1 0 208 chain 17803 chr2 243199373 + 198771748 198771952 L1PA8 5853 + 3680 3884 133397 204 chain 71939 chr2 243199373 + 198776898 198777684 L1PA2 6032 + 5249 6028 47504 623 7 0 156 chain 165665 chr2 243199373 + 198786730 198788860 SVA_F 1814 - 0 1804 22558 10 2 0 549 135 0 51 127 0 216 78 0 25 0 15 11 0 1 926 chain 4559 chr2 243199373 + 198787327 198787426 SVA_F 1814 - 645 735 79759 4 1 0 38 8 0 48 chain 3040 chr2 243199373 + 198787477 198787543 SVA_F 1814 - 786 852 79759 66 chain 4327 chr2 243199373 + 198787543 198787604 SVA_F 1814 - 725 786 142308 61 chain 1784 chr2 243199373 + 198787820 198787847 SVA_F 1814 - 699 726 130935 27 chain 1293 chr2 243199373 + 198787847 198787874 SVA_F 1814 - 550 577 129243 27 chain 36295 chr2 243199373 + 198799531 198800198 L1PA15 4387 + 3692 4356 74509 108 0 1 12 0 2 12 4 0 47 1 0 16 4 2 35 8 7 126 2 0 40 6 5 26 1 0 6 2 23 22 41 41 44 6 3 35 45 33 18 chain 3721 chr2 243199373 + 198809211 198809284 MER63A 208 - 0 68 211629 38 21 16 14 chain 15782 chr2 243199373 + 198817377 198817712 THE1B 368 + 26 367 139012 56 34 35 59 0 2 6 55 59 59 18 17 48 chain 81099 chr2 243199373 + 198820173 198821724 L1PA8A 6298 - 7 1036 43141 74 5 16 11 1 0 221 532 0 479 2 1 21 0 1 95 2 1 4 0 1 104 chain 36049 chr2 243199373 + 198820540 198821007 L1PA8 5853 - 0 461 74836 93 1 0 18 1 0 49 6 5 9 1 0 69 2 0 44 6 5 139 0 1 29 chain 12996 chr2 243199373 + 198822985 198823170 MER30 238 - 0 199 148263 109 7 0 9 4 22 5 0 3 51 chain 29892 chr2 243199373 + 198839583 198839898 AluYb8 318 + 0 315 85120 315 chain 10717 chr2 243199373 + 198856800 198856923 L1PA3long 6157 - 10 133 157343 123 chain 530365 chr2 243199373 + 198882661 198889133 L1PA7 6471 + 3 6468 4148 206 1 2 18 16 1 12 8 23 142 1 2 110 0 1 906 1 0 330 1 0 648 0 1 178 0 1 48 10 0 700 0 1 151 1 2 5 1 0 6 1 0 28 3 0 24 0 8 279 1 0 153 0 11 343 17 1 174 1 3 57 0 1 1036 1 3 521 1 0 79 0 1 216 1 0 26 3 0 7 chain 11114 chr2 243199373 + 198889212 198889342 AluSp 311 + 7 137 155760 130 chain 28149 chr2 243199373 + 198898730 198899050 L1PA5 6144 - 9 330 92464 138 0 1 182 chain 19988 chr2 243199373 + 198899051 198899276 L1PA5 6144 + 5586 5811 127175 225 chain 3053 chr2 243199373 + 198910822 198910856 MER58A 224 + 46 80 223949 34 chain 6539 chr2 243199373 + 198911110 198911179 L1P1 4361 + 10 79 180923 69 chain 7650 chr2 243199373 + 198941981 198942067 L1PA4 6152 + 6064 6150 173228 86 chain 81433 chr2 243199373 + 198985342 198986452 L1MA2 4263 - 150 1260 42998 8 1 0 62 3 0 78 11 9 148 3 0 146 2 1 29 0 4 42 6 2 121 4 5 180 0 8 88 0 1 178 chain 38661 chr2 243199373 + 198997844 198998262 L1PA2 6032 + 5613 6031 71211 418 chain 33827 chr2 243199373 + 199020681 199021132 MER4A1 472 + 0 462 77897 15 0 2 24 0 7 343 12 14 57 chain 107239 chr2 243199373 + 199021597 199023185 THE1C-int 1605 + 25 1605 34903 302 0 6 92 26 33 56 0 2 46 0 1 206 0 1 4 1 0 32 0 1 115 27 20 63 0 1 85 126 116 107 0 1 4 11 4 250 3 0 32 chain 17451 chr2 243199373 + 199060078 199060423 MSTA 426 - 21 426 134373 82 0 34 24 72 71 31 0 4 22 22 45 92 chain 539063 chr2 243199373 + 199060984 199067139 L1PA5 6144 + 3 6139 2979 105 0 4 616 0 1 682 0 1 711 0 2 1030 2 0 41 1 2 603 1 0 1225 0 1 39 0 1 87 27 0 985 chain 101669 chr2 243199373 + 199071515 199073002 L1PREC2 3366 - 414 1866 36351 30 24 17 17 52 38 44 1 0 54 2 0 358 2 3 10 0 2 320 11 12 25 1 2 116 4 0 193 5 0 7 0 1 110 1 0 3 2 0 27 18 13 50 chain 8583 chr2 243199373 + 199079075 199079348 Ricksha_c 1012 + 91 328 167831 45 19 14 20 13 7 25 104 79 47 chain 15005 chr2 243199373 + 199080370 199080612 Ricksha 1077 + 73 304 141307 6 1 0 4 1 0 21 8 5 12 3 0 29 6 3 151 chain 37330 chr2 243199373 + 199082420 199082836 L1PA4 6152 - 0 416 73051 416 chain 2937 chr2 243199373 + 199161300 199161358 MER96B 391 - 103 160 226400 14 5 4 25 1 0 5 0 1 8 chain 35399 chr2 243199373 + 199175529 199176030 MER1A 529 - 0 508 75676 58 18 15 54 0 3 109 1 0 188 14 22 59 chain 52939 chr2 243199373 + 199283408 199284007 L1PA5 6144 - 3 603 57057 384 0 1 215 chain 272299 chr2 243199373 + 199290358 199293669 L1PA7 6471 - 3 3323 15062 28 6 7 146 1 0 481 0 3 141 1 3 46 1 0 7 1 5 1121 0 3 108 0 1 363 7 5 501 2 0 153 1 2 196 chain 26165 chr2 243199373 + 199296180 199296481 L1P1 4361 - 2648 2971 99344 96 0 22 205 chain 6755 chr2 243199373 + 199305576 199305805 MER51A 677 - 405 677 179287 29 62 104 40 60 61 38 chain 98013 chr2 243199373 + 199314540 199315621 L1PA3long 6157 - 5 1086 37275 149 0 1 13 1 0 918 chain 4447 chr2 243199373 + 199358703 199358876 MLT1B 390 - 11 186 201373 40 85 86 13 12 13 23 chain 177499 chr2 243199373 + 199373226 199375340 L1PA6 6164 - 2 2129 21208 8 3 0 35 0 15 1006 0 2 453 2 0 237 1 2 369 chain 208274 chr2 243199373 + 199393636 199396258 L1PA8 5853 + 3214 5853 18620 56 0 6 316 0 2 311 3 5 566 2 0 112 1 0 417 4 7 55 4 5 64 0 1 88 0 1 106 0 1 93 0 9 129 1 0 44 2 0 74 1 0 58 2 1 19 1 0 93 chain 116103 chr2 243199373 + 199403143 199404607 L1PA7 6471 - 7 1494 32416 5 2 0 18 0 2 135 0 1 75 1 8 83 0 1 72 1 5 157 6 8 49 3 4 40 12 16 161 1 4 517 0 1 37 2 1 87 chain 39957 chr2 243199373 + 199405509 199406045 MLT2A2 560 + 0 560 69385 180 1 0 17 31 38 171 0 11 48 0 7 88 chain 3476 chr2 243199373 + 199429498 199429544 L1PREC2 3366 - 1590 1633 215718 14 3 0 29 chain 69682 chr2 243199373 + 199439450 199440218 L1PA3long 6157 - 1 769 48532 768 chain 60489 chr2 243199373 + 199440218 199440876 L1PA3long 6157 + 4740 5398 52404 658 chain 21580 chr2 243199373 + 199446465 199446700 L1HS 6032 - 4311 4546 121846 235 chain 394005 chr2 243199373 + 199446700 199450971 L1PA2 6032 + 1741 6016 10320 2479 6 10 1786 chain 2955 chr2 243199373 + 199453719 199453764 MIRb 242 + 106 145 225969 7 6 0 32 chain 41186 chr2 243199373 + 199481010 199481668 L1PA11 4918 + 3902 4558 67659 69 5 15 21 1 2 40 4 12 275 1 0 57 17 14 65 2 0 16 5 4 16 4 0 9 8 3 10 13 9 15 1 0 4 chain 28656 chr2 243199373 + 199489729 199490107 L1PA7 6471 - 7 383 90503 142 0 2 11 18 11 72 1 3 91 0 1 43 chain 93249 chr2 243199373 + 199534381 199535479 L1PA4 6152 - 9 1084 38581 104 0 1 27 7 0 228 19 0 256 0 1 232 0 1 225 chain 58362 chr2 243199373 + 199535479 199536130 L1PA4 6152 + 4418 5068 53771 173 1 0 477 chain 29478 chr2 243199373 + 199541518 199541871 L1PA7 6471 - 6 360 86721 151 5 7 170 1 0 26 chain 9981 chr2 243199373 + 199541871 199541983 L1PA7 6471 + 5979 6091 160670 112 chain 11817 chr2 243199373 + 199544177 199544452 L1PB1 5432 + 5169 5420 152955 51 2 1 16 1 0 40 7 6 13 3 0 6 66 51 17 1 0 21 1 0 13 1 0 16 chain 4690 chr2 243199373 + 199548315 199548371 MER58A 224 + 53 109 198643 56 chain 509992 chr2 243199373 + 199549184 199555615 L1PA7 6471 + 3 6463 6165 194 8 7 24 2 1 12 23 22 143 12 0 77 20 0 172 1 0 4 0 1 21 0 1 4 1 0 81 14 4 285 1 12 243 0 1 454 0 10 248 11 15 393 0 1 87 0 2 109 0 1 7 1 4 452 13 13 436 0 4 653 0 1 166 1 2 150 15 16 136 0 4 426 0 1 59 11 6 37 12 28 387 0 4 85 0 1 47 0 1 50 1 3 476 1 0 71 0 11 94 chain 7352 chr2 243199373 + 199583344 199583436 L1PA7 6471 - 4 94 175079 8 3 0 7 0 1 74 chain 15121 chr2 243199373 + 199584421 199584747 L1PB1 5432 - 13 307 140988 15 1 0 13 1 0 21 1 0 24 24 19 19 16 6 6 3 0 16 1 0 44 7 6 9 2 1 53 15 9 12 1 0 8 1 0 13 chain 39849 chr2 243199373 + 199591188 199591681 L1PA7 6471 + 5666 6164 69535 302 5 6 36 2 6 148 chain 9522 chr2 243199373 + 199591686 199591797 L1PA7 6471 + 6196 6307 162969 111 chain 12927 chr2 243199373 + 199591804 199591960 L1PA7 6471 + 6314 6470 148518 156 chain 198190 chr2 243199373 + 199648708 199651150 L1PA7 6471 - 2 2614 19342 149 1 2 41 1 2 231 0 1 33 1 0 4 0 157 133 8 6 89 2 0 471 3 0 186 0 2 138 6 5 4 0 1 112 1 2 28 0 4 663 1 3 79 0 9 57 chain 2088 chr2 243199373 + 199665290 199665330 L1PA7 6471 + 6285 6314 237751 22 11 0 7 chain 12125 chr2 243199373 + 199665331 199665477 L1PA7 6471 + 6323 6469 151710 146 chain 56165 chr2 243199373 + 199687559 199688285 LTR12 884 - 0 884 55032 95 1 0 81 1 0 239 7 12 57 0 22 37 0 133 208 chain 17775 chr2 243199373 + 199693118 199693369 L1PA10 4194 + 3915 4161 133493 167 2 1 32 13 10 25 1 0 11 chain 86717 chr2 243199373 + 199712408 199714911 L1PB1 5432 + 4193 5413 40874 319 0 3 10 1 0 6 0 1 121 0 3 447 1329 64 53 2 1 16 2 0 44 1 0 15 25 13 18 8 5 14 2 0 24 1 0 21 1 0 8 1 0 14 chain 14538 chr2 243199373 + 199720653 199720867 L1PA8 5853 + 5636 5848 142769 46 1 0 9 1 2 47 2 1 19 12 11 77 chain 27635 chr2 243199373 + 199727611 199727905 AluYa5 310 - 17 310 94250 175 1 0 118 chain 17034 chr2 243199373 + 199733877 199734641 LTR12D 1347 - 128 880 135506 17 137 2 78 269 345 62 1 0 4 0 59 43 85 74 68 chain 4177 chr2 243199373 + 199733918 199733991 LTR12D 1347 - 241 311 204885 24 13 11 22 1 0 13 chain 332526 chr2 243199373 + 199757002 199762418 L1PA11 4918 + 2 4629 12109 40 2 0 36 4 1 30 28 25 46 14 14 19 2 0 5 2 1 255 1 10 266 1 0 229 17 17 241 4 3 157 381 16 383 17 19 225 5 4 16 0 4 39 4 5 43 263 0 51 6 4 503 16 4 108 1 2 253 0 7 101 0 2 183 5 8 33 5 6 20 1 0 6 2 1 223 1 0 181 7 8 393 0 1 82 0 1 13 151 0 48 2 1 13 2 0 68 2 0 13 2 1 18 25 36 11 1 0 13 60 44 18 chain 5430 chr2 243199373 + 199787343 199787703 MER72 723 - 0 361 190707 66 275 276 19 chain 44982 chr2 243199373 + 199799206 199799689 L1PA2 6032 - 260 743 63075 483 chain 24949 chr2 243199373 + 199799690 199799960 L1PA2 6032 + 5762 6032 105062 270 chain 3035 chr2 243199373 + 199841176 199841211 L1PB3 3668 + 76 111 224290 35 chain 6236 chr2 243199373 + 199845694 199845863 MER20 218 + 29 193 183272 21 47 41 54 25 26 22 chain 175624 chr2 243199373 + 199872445 199874830 L1PA7 6471 - 2 2339 21383 108 0 1 254 0 8 202 0 2 184 1 0 93 0 3 923 0 1 18 7 11 315 242 176 38 chain 94149 chr2 243199373 + 199891647 199892686 L1PA3long 6157 - 478 1517 38315 1039 chain 43790 chr2 243199373 + 199892686 199893174 L1PA3long 6157 + 5669 6157 64467 488 chain 506309 chr2 243199373 + 199893208 199899317 L1PA6 6164 + 5 6162 6446 231 0 2 97 0 1 4 0 8 25 1 0 87 5 6 51 0 2 48 1 0 491 0 1 4 1 0 244 0 1 381 7 3 112 0 18 8 0 1 205 0 1 280 9 10 115 5 13 144 0 1 186 0 3 30 0 1 343 0 2 9 2 0 16 0 1 32 2 1 562 1 2 76 0 6 186 0 1 550 21 13 201 13 5 405 0 1 37 0 6 37 0 4 212 1 0 278 5 9 343 1 0 4 chain 12210 chr2 243199373 + 199900121 199900261 L1PA7 6471 + 6169 6309 151381 140 chain 11900 chr2 243199373 + 199900276 199900426 L1PA7 6471 + 6321 6467 152599 140 4 0 6 chain 266560 chr2 243199373 + 199924053 199928482 L1MA1 4479 + 228 4163 15362 35 6 0 17 2 0 68 16 14 62 0 2 116 0 2 133 0 3 107 4 0 102 3 0 23 1 0 24 9 8 73 0 4 61 5 6 226 140 2 13 0 1 79 0 3 325 16 16 10 22 0 188 12 4 112 5 0 9 1 9 394 0 3 120 1 0 65 2 1 12 0 1 52 6 7 31 2 0 33 1 0 58 316 17 79 1 0 26 2 0 86 9 11 34 0 1 35 14 12 15 11 7 67 1 0 11 5 0 50 9 4 50 1 0 6 8 9 7 3 0 129 2 0 221 2 0 15 2 1 57 6 7 7 1 0 20 3 1 12 1 0 36 0 1 48 55 51 49 40 41 6 2 0 14 5 9 6 0 3 19 1 0 10 1 0 11 chain 35026 chr2 243199373 + 199937730 199938135 L1PA5 6144 + 5736 6140 76153 327 2 1 76 chain 342306 chr2 243199373 + 199938140 199942420 L1PA7 6471 + 2168 6466 11822 455 9 0 71 1 0 71 45 11 109 1 5 592 0 1 14 0 1 108 0 1 918 0 4 49 0 1 305 0 1 70 2 1 516 0 1 133 9 8 44 0 99 255 76 27 274 4 5 138 1 0 10 chain 3052 chr2 243199373 + 199971480 199971543 L1MB8 1703 - 47 101 223956 20 17 8 26 chain 277361 chr2 243199373 + 200020243 200024185 L1PA10 4194 + 197 4106 14787 10 2 0 9 11 7 9 2 0 9 5 4 4 1 0 22 2 0 16 1 0 7 45 19 21 3 1 18 1 0 21 1 0 7 5 0 14 4 0 6 6 2 81 1 0 29 0 1 21 18 15 210 0 2 12 91 92 495 0 1 4 1 0 400 1 0 63 0 1 185 6 10 94 0 1 156 3 0 5 15 19 59 0 1 154 0 1 5 1 0 103 0 1 32 1 0 7 8 12 21 1 0 444 1 0 223 0 12 43 0 2 280 2 1 4 0 1 400 chain 4629 chr2 243199373 + 200027210 200027270 MADE1 96 + 0 96 199309 14 0 36 46 chain 19025 chr2 243199373 + 200032946 200033307 THE1B 368 + 0 368 130049 102 13 14 53 77 84 53 7 6 56 chain 36532 chr2 243199373 + 200044087 200044528 LTR7 482 + 0 473 74194 220 0 1 44 0 31 177 chain 299413 chr2 243199373 + 200044539 200048135 HERVH-int 3825 + 0 3825 13458 530 1 0 11 1 0 4 0 1 24 1 0 9 2 1 10 4 0 7 6 0 6 3 1 14 1 38 27 2 0 15 2 1 21 21 0 59 1 0 64 0 3 380 15 0 459 4 31 126 1 8 453 0 1 433 0 1 380 10 220 13 18 16 458 chain 12515 chr2 243199373 + 200049953 200050166 LTR7 482 + 0 213 150178 86 50 0 13 0 50 64 chain 20161 chr2 243199373 + 200050173 200050394 LTR7 482 + 261 482 126639 221 chain 28172 chr2 243199373 + 200053784 200054154 MLT2A1 477 - 102 477 92398 52 6 5 35 0 2 108 1 5 168 chain 4496 chr2 243199373 + 200059092 200059183 MER67A 545 + 0 80 200832 11 4 3 45 10 1 16 1 0 4 chain 13858 chr2 243199373 + 200064260 200064409 L1PA3long 6157 + 6008 6157 145039 149 chain 515470 chr2 243199373 + 200104335 200110451 L1PA6 6164 - 2 6164 5624 6 2 0 301 0 1 131 0 1 143 0 1 460 0 8 56 0 1 684 0 4 63 1 3 119 1 5 469 1 3 403 1 0 83 2 0 747 0 1 144 0 1 1296 0 1 223 0 17 123 0 1 153 11 10 42 1 0 55 26 33 174 1 2 194 chain 9581 chr2 243199373 + 200111969 200112074 LTR7 482 + 377 482 162686 105 chain 284174 chr2 243199373 + 200112076 200115693 HERVH-int 3825 + 0 3825 14406 188 8 6 7 6 0 10 0 11 311 11 7 30 1 0 9 2 1 25 0 13 13 3 0 26 1 0 40 1 0 14 22 1 17 2 1 49 1 0 5 0 1 449 15 0 207 0 1 239 8 35 1260 141 353 496 chain 36783 chr2 243199373 + 200116956 200117371 LTR7 482 + 0 446 73822 263 1 32 151 chain 88426 chr2 243199373 + 200127139 200128255 MER11A 1151 + 0 1151 40214 107 0 2 67 8 0 23 2 0 92 0 2 95 0 1 147 0 7 16 1 0 114 6 9 8 1 0 115 1 0 13 7 41 84 8 7 201 chain 88217 chr2 243199373 + 200144759 200145846 MER11B 1079 + 0 1079 40294 264 3 0 320 12 11 177 8 2 213 0 1 61 11 12 18 chain 12998 chr2 243199373 + 200210006 200210154 L1PA5 6144 - 0 157 148255 15 0 9 133 chain 6941 chr2 243199373 + 200270733 200270927 MER2 342 + 131 326 177879 4 0 1 14 1 5 48 3 0 20 44 42 14 23 23 19 0 1 4 chain 4546 chr2 243199373 + 200273262 200273337 MADE1 96 + 1 96 200257 36 8 28 31 chain 237947 chr2 243199373 + 200393602 200397168 L1PB1 5432 + 1445 5420 16884 99 0 4 53 0 5 40 4 3 465 0 10 369 1 0 22 316 12 29 0 1 206 0 3 59 0 712 58 4 13 121 1 3 218 7 6 158 0 1 40 0 1 22 17 11 140 0 1 116 1 2 173 0 1 21 0 2 249 1 0 204 10 11 5 1 0 24 1 0 9 1 0 9 2 0 3 2 0 10 2 0 50 1 0 18 1 0 9 0 1 34 1 0 12 28 16 18 8 5 14 2 0 24 1 0 17 5 4 13 1 0 16 chain 123147 chr2 243199373 + 200398042 200399416 L1PA4 6152 - 2 1378 29992 581 0 1 35 0 1 758 chain 82904 chr2 243199373 + 200401484 200402492 L1P3 4156 + 714 1718 42377 166 0 2 52 10 5 71 1 0 708 chain 11805 chr2 243199373 + 200406476 200406658 MER102b 334 - 110 284 153011 69 5 0 75 4 0 8 7 8 14 chain 34559 chr2 243199373 + 200408815 200409331 MLT2A2 560 - 0 560 76816 147 5 16 23 34 66 128 1 0 21 5 7 152 chain 4514 chr2 243199373 + 200410445 200410499 MSTC 436 - 382 436 200623 54 chain 232752 chr2 243199373 + 200424797 200427450 L1PA4 6152 - 0 2637 17156 6 0 5 328 0 1 1454 0 4 142 30 0 202 0 4 491 chain 4535 chr2 243199373 + 200476687 200476739 MSTC 436 + 251 303 200403 52 chain 415293 chr2 243199373 + 200503084 200509215 L1PB1 5432 - 12 5420 9657 16 1 0 13 1 0 21 1 0 22 2 0 16 1 0 4 3 1 16 27 15 16 6 5 39 1 0 15 2 1 53 2 0 8 10 6 6 1 0 13 1 0 20 21 19 280 3 1 109 0 2 76 2 0 439 0 3 62 330 0 27 0 5 20 2 3 50 0 2 278 21 15 881 2 0 215 0 1 109 39 30 64 0 1 496 1 0 60 2 1 128 0 1 193 1 5 134 358 0 263 1 0 186 10 11 299 3 4 232 0 3 5 3 0 13 2 3 366 1 0 7 chain 22207 chr2 243199373 + 200561736 200562016 AluY 311 + 23 295 119316 109 0 1 155 9 0 7 chain 22160 chr2 243199373 + 200565643 200565918 MER75 514 - 13 288 119548 275 chain 19225 chr2 243199373 + 200565924 200566362 L1PA15 4387 + 3908 4330 129451 25 1 0 57 75 26 72 3 42 15 0 1 14 4 10 14 3 2 18 4 0 12 2 1 39 17 14 44 3 1 11 1 0 4 chain 17268 chr2 243199373 + 200567780 200567967 L1PA3long 6157 - 0 187 134873 187 chain 23817 chr2 243199373 + 200579548 200579818 L1PA4 6152 + 5872 6143 111380 19 0 1 251 chain 298529 chr2 243199373 + 200587279 200591300 L1PA10 4194 - 33 3790 13504 11 1 0 34 3 0 339 260 0 1129 1 0 24 0 2 17 0 2 563 22 25 88 1 0 80 1 0 198 3 0 223 1 2 538 18 22 6 4 0 358 21 19 77 chain 169532 chr2 243199373 + 200594017 200596077 L1PA8 5853 + 3786 5848 22111 424 1 0 37 0 2 335 0 1 170 7 17 237 2 0 78 1 0 476 1 0 45 2 0 71 1 0 10 1 0 51 2 1 19 1 0 88 chain 26684 chr2 243199373 + 200596344 200596625 AluYa5 310 + 15 296 97368 281 chain 11269 chr2 243199373 + 200609238 200609374 MLT1B 390 + 238 374 155161 136 chain 10352 chr2 243199373 + 200626674 200626821 MER30 238 - 0 172 158895 39 3 0 59 0 2 9 8 34 29 chain 5855 chr2 243199373 + 200648063 200648130 HY4 93 - 0 67 186636 67 chain 4350 chr2 243199373 + 200673150 200673248 L1MB3 1562 - 9 104 202582 20 12 11 30 8 7 16 1 0 11 chain 77766 chr2 243199373 + 200686627 200688700 Tigger1 2417 - 0 1474 44630 51 13 0 110 16 13 26 1028 423 119 0 9 538 1 0 55 1 9 25 0 3 67 0 3 23 chain 10586 chr2 243199373 + 200725504 200725691 MER20 218 - 42 218 157890 85 32 20 29 10 11 31 chain 12944 chr2 243199373 + 200740228 200740498 LTR23 429 + 0 260 148452 8 1 0 63 66 62 42 6 0 18 6 7 60 chain 5273 chr2 243199373 + 200740847 200740926 LTR23 429 + 72 153 192287 24 4 6 51 chain 414445 chr2 243199373 + 200752496 200757456 L1PA7 6471 + 1493 6470 9685 30 0 1 195 0 1 127 0 1 4 1 0 76 0 1 4 0 1 145 3 0 10 3 4 68 0 7 470 18 8 33 0 1 1393 10 0 347 7 6 228 12 20 275 1 0 671 0 7 367 1 4 53 0 8 134 0 1 82 0 2 192 chain 97301 chr2 243199373 + 200781104 200782551 THE1C-int 1605 - 0 1605 37484 107 6 0 8 1 8 261 0 24 31 34 35 10 0 2 5 2 0 89 9 19 28 0 30 134 0 1 55 0 10 242 7 6 34 38 66 91 30 31 68 0 54 141 4 3 12 chain 14232 chr2 243199373 + 200793908 200794071 L1PA5 6144 + 5982 6144 143787 144 1 0 18 chain 17423 chr2 243199373 + 200825241 200825504 MER2 342 + 71 341 134454 9 0 1 14 1 0 12 0 2 21 5 6 25 1 0 66 3 9 59 3 2 44 chain 4401 chr2 243199373 + 200836326 200836394 MLT2D 439 - 324 393 201915 24 5 6 39 chain 65231 chr2 243199373 + 200845668 200846814 L1PB1 5432 + 4391 5418 50454 69 5 9 12 0 1 6 1 0 133 1 0 5 3 0 171 1 9 189 1 2 17 0 2 30 0 1 49 108 9 9 1 0 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 3 1 16 1 0 43 2 1 13 2 0 8 20 11 13 9 6 14 2 0 24 1 0 22 1 0 12 5 4 10 chain 29834 chr2 243199373 + 200859879 200860279 MER57B1 401 + 0 401 85339 223 5 10 41 0 1 16 6 1 109 chain 2567 chr2 243199373 + 200869562 200869637 MIR 256 - 66 135 232241 19 33 27 23 chain 21918 chr2 243199373 + 200879630 200879901 AluSg7 307 - 24 296 120553 151 0 1 120 chain 8661 chr2 243199373 + 200881426 200881552 MLT1A0 366 - 0 129 167421 31 5 6 10 0 1 43 0 1 37 chain 12899 chr2 243199373 + 200881552 200881728 THE1B 368 - 0 176 148633 22 6 7 46 1 0 101 chain 64620 chr2 243199373 + 200882269 200883127 THE1B-int 1605 - 695 1605 50739 170 1 2 285 4 29 18 0 1 49 0 1 44 0 6 35 0 3 113 10 11 98 5 19 26 chain 26589 chr2 243199373 + 200883127 200883484 THE1B 368 - 0 368 97698 75 1 0 95 2 0 30 1 0 104 5 20 44 chain 14728 chr2 243199373 + 200920404 200920618 L1PA15 4387 + 162 374 142172 4 1 0 65 15 14 129 chain 5282 chr2 243199373 + 200968595 200968671 L1MA5 2750 - 173 251 192185 13 1 0 26 1 4 35 chain 462305 chr2 243199373 + 200978022 200983642 L1PA6 6164 - 4 6144 8312 7 0 2 31 5 6 102 7 8 265 0 2 694 1 0 517 191 0 340 0 1 153 25 1 1697 0 1 211 0 3 631 14 3 406 5 6 242 7 742 69 chain 55997 chr2 243199373 + 200988976 200990180 THE1B-int 1605 - 0 735 55123 306 3 0 232 0 1 83 3 0 6 0 3 11 486 19 74 chain 34255 chr2 243199373 + 200989629 200990092 LTR2 463 - 0 463 77270 24 1 0 28 1 0 30 8 9 86 0 4 246 4 1 35 chain 29088 chr2 243199373 + 200990198 200990613 LTR9B 643 - 81 499 88600 84 1 0 38 26 27 191 0 1 13 8 10 54 chain 44602 chr2 243199373 + 201016728 201017240 MER9a1 513 + 0 513 63479 507 0 1 5 chain 9405 chr2 243199373 + 201039929 201040046 LTR12C 1709 + 928 1086 163536 41 0 41 76 chain 6344 chr2 243199373 + 201040647 201040726 MSTA 426 - 308 387 182431 79 chain 75900 chr2 243199373 + 201064711 201068182 L1PBa 3878 + 100 2609 45543 46 71 23 44 1 0 11 12 10 162 0 2 47 2302 1387 90 8 13 108 0 1 423 4 0 142 chain 27811 chr2 243199373 + 201068182 201068758 MER51B 395 + 0 395 93662 39 13 0 47 177 0 101 1 0 12 0 2 31 1 0 13 1 0 61 0 10 79 chain 241260 chr2 243199373 + 201068821 201071781 L1PA7 6471 + 3451 6467 16710 17 0 13 8 26 68 21 0 5 246 3 0 569 0 1 157 18 19 1001 0 1 44 0 3 267 5 7 124 20 10 203 7 8 224 chain 15573 chr2 243199373 + 201072111 201072457 L1PB1 5432 + 5118 5427 139662 16 1 0 4 1 0 8 7 0 12 5 1 61 2 1 16 1 0 44 1 0 10 30 18 17 11 8 12 2 0 6 0 1 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 107236 chr2 243199373 + 201097117 201098372 L1PA6 6164 + 4895 6162 34905 420 1 0 446 0 15 378 2 0 8 chain 8370 chr2 243199373 + 201104425 201104518 L1PA8 5853 - 0 93 169019 93 chain 97156 chr2 243199373 + 201115358 201116420 L1PA3long 6157 + 4999 6064 37524 347 0 3 715 chain 7478 chr2 243199373 + 201138595 201138691 L1PA8 5853 + 5762 5853 174285 13 5 0 78 chain 3624 chr2 243199373 + 201165029 201165073 Tigger2b_Pri 1066 - 999 1043 213290 44 chain 146360 chr2 243199373 + 201198235 201199873 L1PA4 6152 - 9 1638 25108 763 10 4 215 3 0 647 chain 7134 chr2 243199373 + 201237898 201237986 HY4 93 + 1 89 176517 88 chain 3785 chr2 243199373 + 201257348 201257395 MER2 342 - 265 312 210585 47 chain 6258 chr2 243199373 + 201327411 201327506 AluJr 308 + 54 143 183101 32 1 0 38 1 0 11 4 0 8 chain 35616 chr2 243199373 + 201339944 201340413 MER4A1 472 - 0 472 75392 97 0 1 23 3 4 106 11 12 229 chain 8048 chr2 243199373 + 201360610 201360699 MER85 139 + 1 90 170770 89 chain 258717 chr2 243199373 + 201364176 201367020 L1PA3long 6157 + 3318 6156 15765 504 1 0 898 3 0 452 1 0 968 1 0 16 chain 8496 chr2 243199373 + 201405641 201405877 MSTD 398 - 39 323 168311 26 7 6 35 111 160 57 chain 531918 chr2 243199373 + 201425769 201431934 L1PA5 6144 - 0 6144 3970 371 0 1 34 15 0 409 0 3 952 3 2 146 2 1 197 8 10 822 1 0 35 1 0 1728 1 0 264 9 0 127 0 1 487 0 1 116 7 6 53 0 1 377 chain 3129 chr2 243199373 + 201443247 201443280 MLT1E1 597 - 207 240 222383 33 chain 5347 chr2 243199373 + 201450195 201450273 MADE1 96 - 0 94 191571 37 2 18 39 chain 136162 chr2 243199373 + 201470481 201472093 L1PA8 5853 - 767 2386 26806 77 2 5 6 1 0 52 0 1 292 0 1 282 0 1 34 0 1 463 0 1 403 chain 60651 chr2 243199373 + 201472093 201472856 L1PA8 5853 + 5097 5853 52392 467 1 0 46 9 7 65 1 0 8 1 0 50 3 2 18 2 1 92 chain 381509 chr2 243199373 + 201507969 201513266 L1PB1 5432 - 8 5423 10717 4 1 0 16 1 0 13 1 0 21 1 0 24 104 243 50 10 10 410 8 5 112 4 0 247 2 1 15 0 4 87 0 12 25 2 0 21 12 13 277 0 15 67 16 8 211 0 1 114 40 12 5 1 0 4 0 1 143 0 4 268 19 18 107 1 0 37 0 1 54 0 1 164 0 4 83 4 7 45 6 0 9 0 6 187 0 1 161 0 1 205 7 10 160 0 1 32 8 0 249 7 8 13 19 3 253 2 3 205 0 1 165 0 1 153 2 1 10 21 20 15 3 4 10 0 1 6 12 11 475 11 12 29 1 0 10 chain 167176 chr2 243199373 + 201547371 201549443 SVA_E 1901 - 22 1900 22375 870 126 1 81 4 0 56 122 0 35 1 0 19 1 0 118 0 40 514 1 0 24 0 20 100 chain 11311 chr2 243199373 + 201548241 201548367 SVA_E 1901 - 767 892 81066 39 1 0 86 chain 2564 chr2 243199373 + 201548548 201548582 SVA_E 1901 - 519 552 157060 14 4 3 16 chain 2116 chr2 243199373 + 201548582 201548630 SVA_E 1901 - 680 728 137965 48 chain 63590 chr2 243199373 + 201579609 201580310 L1PA4 6152 - 1 702 51192 701 chain 214662 chr2 243199373 + 201583280 201586280 L1PA14 3548 + 485 3456 18188 38 0 1 4 1 0 8 13 15 208 7 0 175 0 1 127 0 1 187 1 0 27 0 2 107 5 0 72 5 2 56 0 4 23 0 1 437 0 6 36 19 1 222 2 0 105 1 0 183 1 0 100 13 18 29 2 1 6 1 0 12 0 5 47 0 10 6 1 5 141 2 0 24 3 1 14 2 0 40 17 13 100 0 1 7 54 46 9 0 2 47 2 1 84 5 1 28 3 2 8 5 1 35 4 2 13 1 0 5 1 0 16 1 0 42 chain 24640 chr2 243199373 + 201602740 201603030 AluSp 311 + 6 295 106782 4 1 0 285 chain 2769 chr2 243199373 + 201679090 201679145 MER81 114 - 26 82 229203 13 1 0 6 8 10 27 chain 9352 chr2 243199373 + 201694731 201694839 U6 107 + 0 107 163795 30 1 0 77 chain 16602 chr2 243199373 + 201694839 201695046 L1PA5 6144 + 5932 6140 136662 152 3 0 22 1 5 29 chain 3584 chr2 243199373 + 201700610 201700654 MLT1A0-int 1658 - 1154 1199 213943 39 0 1 5 chain 20100 chr2 243199373 + 201703254 201703538 LTR5B 1012 - 621 916 126829 17 10 9 25 1 0 185 7 21 6 1 0 32 chain 6579 chr2 243199373 + 201704837 201704918 LTR5B 1012 + 0 83 180614 19 0 2 62 chain 12848 chr2 243199373 + 201715634 201715977 L1PB1 5432 - 2 316 148855 4 1 0 8 1 0 17 1 0 8 1 0 23 1 0 18 34 30 11 9 0 16 1 0 15 6 5 39 21 19 47 4 2 9 21 17 4 1 0 22 chain 30408 chr2 243199373 + 201726936 201727387 LTR7B 505 + 0 490 83670 105 0 10 61 0 38 11 34 27 28 0 2 83 1 0 76 14 13 18 2 0 18 chain 5035 chr2 243199373 + 201727880 201727970 HY4 93 - 3 93 194777 15 4 5 31 6 5 34 chain 11003 chr2 243199373 + 201730600 201730728 LTR46 455 - 295 424 156197 124 0 1 4 chain 10193 chr2 243199373 + 201735592 201735717 Tigger4b 360 - 77 202 159665 125 chain 5456 chr2 243199373 + 201746468 201746533 U6 107 - 31 96 190454 65 chain 23530 chr2 243199373 + 201746594 201746952 L1PA8 5853 + 5489 5845 112962 31 0 1 34 0 2 7 1 0 45 2 0 68 14 13 4 0 1 45 2 1 16 8 7 81 chain 23400 chr2 243199373 + 201779726 201779992 AluSp 311 - 0 268 113643 136 0 1 32 0 1 98 chain 22346 chr2 243199373 + 201803478 201803785 AluSp 311 + 0 300 118719 23 2 0 241 23 18 18 chain 20674 chr2 243199373 + 201821539 201821877 L1PA8 5853 + 5497 5836 125057 22 1 2 39 6 5 43 2 0 62 29 34 36 2 1 19 1 0 76 chain 22186 chr2 243199373 + 201856048 201856312 AluSc8 310 + 38 305 119421 94 0 3 170 chain 346636 chr2 243199373 + 201890659 201894660 L1PA6 6164 + 2120 6160 11706 205 0 2 836 0 1 32 0 1 832 0 1 238 1 0 198 0 3 180 1 0 470 0 8 356 7 6 4 0 1 19 0 28 490 1 0 117 2 0 12 chain 158499 chr2 243199373 + 201898997 201900750 L1P1 4361 - 1886 3643 23519 560 0 5 1186 1 0 6 chain 255328 chr2 243199373 + 201900750 201903623 L1PA4 6152 + 3272 6152 15968 444 2 0 642 0 2 92 0 3 1480 1 0 206 0 5 6 chain 126821 chr2 243199373 + 201906661 201908168 SVA_B 1603 + 0 1603 28854 19 0 1 19 0 2 405 0 116 239 0 6 139 0 5 28 4 0 3 33 0 33 1 0 153 0 4 431 chain 2982 chr2 243199373 + 201907517 201907550 SVA_B 1603 + 1026 1059 163570 33 chain 29972 chr2 243199373 + 201947422 201947735 AluYb8 318 - 5 318 84903 313 chain 28480 chr2 243199373 + 201962110 201962407 AluYa5 310 - 13 310 91266 297 chain 10229 chr2 243199373 + 201965879 201966085 L1PB1 5432 - 10 195 159476 18 1 0 12 1 0 22 1 0 24 25 20 18 17 6 6 1 0 16 1 0 43 chain 7017 chr2 243199373 + 201989775 201989885 MER96B 391 - 56 164 177347 49 10 8 51 chain 3186 chr2 243199373 + 201990622 201990664 MER81 114 - 9 58 221198 36 0 7 6 chain 49828 chr2 243199373 + 201990760 201991318 LTR6B 557 - 0 557 59136 162 2 0 250 0 1 144 chain 81934 chr2 243199373 + 202003724 202004690 LTR5_Hs 974 + 0 974 42788 285 0 1 536 5 12 36 2 0 28 0 2 74 chain 3591 chr2 243199373 + 202006627 202006687 U7 62 + 1 60 213809 6 1 0 28 1 0 5 1 2 18 chain 24486 chr2 243199373 + 202007326 202007610 AluSp 311 - 16 300 107623 284 chain 24182 chr2 243199373 + 202014779 202015070 AluSx4 309 + 3 294 109315 291 chain 115996 chr2 243199373 + 202030310 202031705 SVA_C 1631 - 7 1631 32458 580 0 41 53 1 0 47 2 0 24 27 29 93 0 1 34 0 40 102 1 114 286 0 4 101 0 25 26 0 6 18 chain 2365 chr2 243199373 + 202031017 202031044 SVA_C 1631 - 794 821 152921 27 chain 16032 chr2 243199373 + 202035688 202036012 L1PB1 5432 + 5118 5421 138273 20 1 0 9 1 0 11 8 12 50 2 1 16 1 0 43 1 0 16 2 0 6 1 0 10 9 0 15 2 0 4 1 0 15 2 0 24 24 22 12 1 0 17 chain 9424 chr2 243199373 + 202040428 202040537 MER50 708 - 25 134 163432 109 chain 38461 chr2 243199373 + 202042878 202043386 MER9a3 513 - 0 513 71500 54 0 2 22 0 1 178 1 0 133 0 3 5 6 4 96 1 3 12 chain 5047 chr2 243199373 + 202049561 202049627 MER41A 554 - 89 155 194664 19 1 0 4 0 1 42 chain 4673 chr2 243199373 + 202061999 202062055 MER6C 202 - 61 117 198834 56 chain 12640 chr2 243199373 + 202080669 202080832 L1MA6 2487 - 1321 1485 149681 76 0 1 87 chain 43922 chr2 243199373 + 202084885 202085463 LTR19B 566 + 0 566 64305 172 7 1 100 0 1 21 22 15 14 1 0 128 0 1 113 chain 4887 chr2 243199373 + 202097489 202097546 MIR 256 - 142 199 196396 57 chain 7790 chr2 243199373 + 202097691 202097803 MSTA 426 + 282 402 172356 14 0 5 9 5 8 84 chain 59371 chr2 243199373 + 202103505 202104153 SVA_D 2077 - 14 663 53192 624 0 1 24 chain 21242 chr2 243199373 + 202111658 202111941 AluSg4 309 + 21 308 123048 139 8 13 4 0 1 94 2 0 36 chain 6044 chr2 243199373 + 202114466 202114593 L1MC2 1988 - 33 140 184856 9 1 0 17 0 2 5 36 15 59 chain 175096 chr2 243199373 + 202146659 202149384 SVA_E 1901 - 0 1896 21448 808 127 0 127 694 0 39 4 0 84 1 0 26 1 0 672 2 0 140 chain 7869 chr2 243199373 + 202147467 202147557 SVA_E 1901 - 682 772 113014 90 chain 1815 chr2 243199373 + 202147557 202147594 SVA_E 1901 - 519 555 112045 14 4 3 19 chain 912 chr2 243199373 + 202147730 202147765 SVA_E 1901 - 943 978 135929 35 chain 12560 chr2 243199373 + 202147784 202148040 SVA_E 1901 - 597 806 112045 166 47 0 43 chain 964 chr2 243199373 + 202147950 202147987 SVA_E 1901 - 1062 1097 135929 18 1 0 8 1 0 9 chain 22063 chr2 243199373 + 202148041 202148291 SVA_E 1901 - 806 1053 119952 86 0 1 81 4 0 79 chain 2548 chr2 243199373 + 202148308 202148342 SVA_E 1901 - 645 679 157340 34 chain 2455 chr2 243199373 + 202148377 202148402 SVA_E 1901 - 841 866 164400 25 chain 4244 chr2 243199373 + 202155133 202155183 L1MC2 1988 + 1939 1988 203952 7 1 0 42 chain 536905 chr2 243199373 + 202155267 202161387 L1PA4 6152 + 1 6143 3325 295 1 2 266 6 7 55 0 1 1323 0 1 250 0 4 790 0 1 588 0 1 866 4 14 233 0 1 145 0 1 413 1 0 171 0 1 713 chain 531598 chr2 243199373 + 202164668 202170818 L1PA5 6144 + 1 6143 4008 1133 1 2 33 9 0 623 4 0 282 7 8 112 0 4 625 0 1 339 0 1 413 0 1 636 1 0 421 4 3 1498 2 0 7 chain 54956 chr2 243199373 + 202176639 202177415 L1P4 1494 + 125 904 55733 19 1 0 201 28 29 94 1 0 121 0 11 184 2 1 108 6 0 11 chain 402003 chr2 243199373 + 202178503 202183793 L1PB1 5432 + 19 5411 10027 198 1 0 191 1 0 68 16 37 31 4 1 45 1 5 13 0 4 92 0 1 98 0 3 67 1 0 4 6 9 504 18 7 4 1 0 187 0 2 13 0 1 411 0 1 74 0 3 154 2 0 34 3 1 204 20 11 80 0 5 253 1 0 95 0 4 208 6 11 110 1 2 472 8 9 55 0 1 223 48 2 600 7 6 312 11 161 11 3 0 21 1 0 9 1 0 8 10 7 5 2 0 10 0 2 41 2 1 16 1 0 38 6 5 16 14 1 30 8 5 14 2 0 24 1 0 21 1 0 13 0 2 5 chain 70723 chr2 243199373 + 202198141 202198955 L1PA4 6152 - 9 820 48056 11 0 4 551 8 0 197 0 1 47 chain 17111 chr2 243199373 + 202201033 202201365 L1PA15 4387 - 31 344 135279 28 6 1 12 3 1 44 20 17 5 0 1 27 5 4 7 4 0 24 1 0 16 10 7 32 1 0 26 1 0 55 0 1 5 chain 3327 chr2 243199373 + 202205855 202205902 L1MC2 1988 + 1939 1985 218447 7 1 0 39 chain 28636 chr2 243199373 + 202223134 202223439 AluYa5 310 - 6 310 90576 178 1 0 126 chain 491080 chr2 243199373 + 202234452 202240497 L1PA7 6471 + 413 6463 7314 197 2 1 141 1 0 44 0 2 21 0 1 4 6 5 26 8 9 24 15 15 127 11 3 176 5 1 548 14 15 100 0 1 767 1 0 170 0 1 288 6 10 147 5 6 117 0 1 147 0 1 307 2 1 90 0 6 185 0 1 464 1 0 57 0 1 119 0 1 42 0 2 425 1 0 391 1 0 89 4 5 22 1 0 399 0 1 109 0 1 74 3 0 102 8 9 31 chain 3084 chr2 243199373 + 202284476 202284516 MER46C 351 - 36 75 223262 34 1 0 5 chain 4551 chr2 243199373 + 202286182 202286328 MER20 218 - 68 218 200202 15 57 69 35 7 0 10 3 2 19 chain 6960 chr2 243199373 + 202288236 202288319 HY4 93 + 1 84 177741 83 chain 26228 chr2 243199373 + 202289317 202289629 AluYk4 311 - 4 311 99100 181 2 0 3 3 0 123 chain 313234 chr2 243199373 + 202291917 202295679 L1PA5 6144 - 19 6144 12882 170 1 3 463 1 0 66 0 6 123 1 0 641 0 1 387 0 1 201 0 2308 586 9 21 68 6 16 78 0 11 841 1 15 119 chain 26918 chr2 243199373 + 202298683 202298979 AluYk4 311 - 15 311 96561 296 chain 37123 chr2 243199373 + 202304406 202304804 L1PA3long 6157 + 5746 6144 73349 398 chain 8194 chr2 243199373 + 202305442 202305567 MER85 139 + 0 139 169985 48 1 5 43 1 13 7 2 0 23 chain 49427 chr2 243199373 + 202326195 202326868 L1MA3 4352 - 900 1580 59438 29 3 1 41 8 9 99 1 5 60 0 1 279 0 3 153 chain 11806 chr2 243199373 + 202337941 202338157 MER2 342 + 149 335 153002 128 55 25 33 chain 69455 chr2 243199373 + 202348755 202349505 L1PA2 6032 + 5280 6032 48628 736 0 2 14 chain 6672 chr2 243199373 + 202373220 202373317 L1MB2 1706 - 12 107 179886 7 1 0 75 2 1 12 chain 19043 chr2 243199373 + 202377604 202377814 L1PA3long 6157 + 5947 6157 129994 210 chain 43022 chr2 243199373 + 202377843 202378524 L1PA16 3655 + 2776 3463 65395 63 89 92 37 0 4 228 6 5 85 2 0 118 7 9 46 chain 136887 chr2 243199373 + 202391253 202393234 L1PA15 4387 + 2278 4256 26665 137 0 6 72 13 15 87 0 1 65 8 12 139 6 8 13 1 0 87 0 1 246 7 5 23 0 1 222 0 1 5 1 0 60 1 2 194 2 1 129 5 7 12 17 7 45 21 22 20 8 5 176 1 0 26 1 0 42 0 1 11 2 1 17 4 0 14 3 2 38 chain 9603 chr2 243199373 + 202402982 202403104 L1MB1 2102 - 94 214 162581 66 2 0 54 chain 46321 chr2 243199373 + 202408583 202409115 L1PA5 6144 - 0 532 61753 532 chain 12682 chr2 243199373 + 202412778 202412923 L1PA6 6164 - 2 147 149519 145 chain 21252 chr2 243199373 + 202416997 202417392 Tigger2 2703 + 541 2658 123013 16 14 19 133 0 13 45 1 5 9 35 27 34 7 0 6 5 1720 90 chain 4362 chr2 243199373 + 202425830 202425913 MLT1E3 631 + 531 619 202425 17 20 25 46 chain 91501 chr2 243199373 + 202427256 202428295 SVA_D 2077 - 17 1350 39130 621 0 1 32 0 50 9 0 1 149 0 78 24 1 0 52 0 1 6 1 2 47 0 1 32 1 163 64 chain 52261 chr2 243199373 + 202430932 202431532 L1PA5 6144 - 0 603 57454 84 0 1 77 0 1 263 0 1 176 chain 10732 chr2 243199373 + 202432597 202432730 ERVL-B4-int 2334 - 2115 2248 157272 133 chain 14025 chr2 243199373 + 202441727 202442009 Tigger4b 360 + 54 331 144484 15 75 72 151 7 5 34 chain 23482 chr2 243199373 + 202449839 202450114 L1PA7 6471 + 6193 6469 113210 87 1 0 176 0 2 11 chain 493199 chr2 243199373 + 202454711 202460469 L1PA3long 6157 - 1 5588 7215 848 0 4 133 1 0 154 1 0 1030 0 5 1403 0 4 1359 0 1 259 311 0 52 0 128 207 chain 51091 chr2 243199373 + 202464741 202465316 L1PA6 6164 + 5587 6162 58260 575 chain 515004 chr2 243199373 + 202477323 202483437 L1PA6 6164 + 2 6160 5674 19 0 13 9 26 13 87 0 12 30 10 11 313 2 1 24 2 1 322 1 2 80 0 25 1359 5 6 119 0 4 738 0 1 1458 0 1 1177 1 0 148 0 1 184 chain 14872 chr2 243199373 + 202519186 202519354 L1PA4 6152 + 5984 6152 141707 168 chain 223103 chr2 243199373 + 202535484 202538304 L1PA7 6471 + 0 6470 17706 404 7 0 191 11 1833 80 0 1 131 0 1 214 0 1 4 1 0 186 5 6 48 0 4 323 2 1 75 1 0 121 4 1 82 0 1 128 1 0 11 3 38 97 2 1 17 3 0 6 0 4 350 0 1799 4 0 1 138 1 0 5 8 9 7 1 0 143 1 0 4 chain 24671 chr2 243199373 + 202592826 202593109 L1PA5 6144 - 6 289 106600 283 chain 26236 chr2 243199373 + 202594325 202594626 AluY 311 + 4 306 99070 232 0 1 69 chain 37778 chr2 243199373 + 202631394 202631825 L1PA4 6152 + 5720 6151 72446 431 chain 16292 chr2 243199373 + 202649925 202650219 MER49 923 - 606 919 137500 32 24 26 78 10 20 46 9 16 46 2 0 5 4 6 38 chain 8123 chr2 243199373 + 202673404 202673493 HY3 101 + 1 90 170363 89 chain 28703 chr2 243199373 + 202721664 202721971 AluYb8 318 + 0 304 90318 132 3 0 172 chain 8343 chr2 243199373 + 202733322 202733421 L1PA6 6164 + 5218 5317 169155 99 chain 74216 chr2 243199373 + 202733421 202734261 L1PA6 6164 + 5324 6162 46405 832 2 0 6 chain 20051 chr2 243199373 + 202768231 202768599 Tigger2a 444 - 66 444 126975 13 27 24 56 2 0 6 4 11 114 14 0 8 16 37 34 11 12 63 chain 7765 chr2 243199373 + 202769377 202769477 MER5A 189 + 2 102 172507 100 chain 3602 chr2 243199373 + 202822130 202822171 MER66C 541 - 120 161 213622 41 chain 5135 chr2 243199373 + 202823547 202823604 L1PA6 6164 - 2 59 193734 57 chain 3038 chr2 243199373 + 202844956 202844995 MIRb 242 + 97 142 224224 33 0 6 6 chain 82234 chr2 243199373 + 202886390 202887278 L1PA3long 6157 + 5269 6157 42663 888 chain 24614 chr2 243199373 + 202946266 202946558 AluSp 311 - 9 300 106913 21 2 1 269 chain 8383 chr2 243199373 + 202946596 202946704 U13 108 + 0 108 168943 53 0 1 13 1 0 41 chain 6040 chr2 243199373 + 202979895 202979973 MADE1 96 + 0 95 184890 30 0 1 18 0 16 30 chain 28911 chr2 243199373 + 202984537 202984905 THE1B 368 + 0 368 89411 168 1 0 30 0 2 93 1 0 75 chain 57947 chr2 243199373 + 203000758 203001610 LTR12D 1347 - 0 1347 54005 90 0 33 142 2 1 32 1 0 27 4 0 20 19 265 26 0 17 8 0 150 200 0 36 26 14 29 21 25 20 55 0 7 29 0 1 34 6 7 71 chain 23515 chr2 243199373 + 203007211 203007517 LTR8 732 - 416 732 113037 277 0 9 13 1 2 15 chain 3545 chr2 243199373 + 203032701 203032781 MIR 256 + 63 142 214616 35 28 27 17 chain 21626 chr2 243199373 + 203044716 203044968 AluSp 311 + 4 256 121668 252 chain 25379 chr2 243199373 + 203065430 203065728 AluSp 311 - 14 311 102787 16 2 1 280 chain 21767 chr2 243199373 + 203072975 203073224 AluSp 311 + 53 299 121146 5 3 0 241 chain 24149 chr2 243199373 + 203085414 203085690 AluSp 311 - 22 300 109477 12 0 2 264 chain 9197 chr2 243199373 + 203117783 203117889 MER50B 698 + 576 682 164575 106 chain 16760 chr2 243199373 + 203118153 203118349 L1PA5 6144 + 5922 6120 136230 91 0 2 105 chain 21666 chr2 243199373 + 203125610 203125888 AluSp 311 + 21 305 121517 116 5 8 6 0 3 16 0 1 59 1 0 75 chain 23731 chr2 243199373 + 203128730 203129031 AluSp 311 + 11 298 111876 279 14 0 8 chain 25193 chr2 243199373 + 203150941 203151247 AluY 311 + 0 302 103776 27 4 0 275 chain 24074 chr2 243199373 + 203171221 203171522 AluSq2 311 - 12 311 109908 8 4 0 161 0 2 128 chain 9098 chr2 243199373 + 203196009 203196113 L1PA4 6152 + 6048 6152 165077 104 chain 23046 chr2 243199373 + 203205479 203205783 AluSp 311 + 12 307 115415 41 9 3 246 3 0 5 chain 22799 chr2 243199373 + 203206948 203207264 AluY 311 + 0 310 116577 32 2 10 90 0 1 167 15 0 10 chain 43102 chr2 243199373 + 203219214 203219754 MLT2A2 560 - 0 559 65288 8 0 4 132 6 21 394 chain 31258 chr2 243199373 + 203226277 203227104 MER41A 554 - 0 511 82068 73 424 113 251 5 0 74 chain 23571 chr2 243199373 + 203232407 203232708 AluSp 311 - 6 303 112734 177 7 3 117 chain 6463 chr2 243199373 + 203281450 203281547 Tigger1 2417 + 1799 1899 181534 53 9 12 35 chain 24446 chr2 243199373 + 203282026 203282325 AluSp 311 - 17 311 107826 43 4 0 131 1 0 120 chain 24585 chr2 243199373 + 203294331 203294693 THE1D 372 - 0 372 107064 38 1 0 90 0 6 45 10 13 77 4 5 16 0 10 25 15 6 41 chain 23454 chr2 243199373 + 203298038 203298336 HSMAR2 1300 + 13 333 113361 73 0 24 28 1 0 173 1 0 22 chain 92612 chr2 243199373 + 203304471 203305553 SVA_B 1603 - 0 1597 38781 192 0 29 312 0 318 376 3 0 42 0 173 36 1 0 74 0 15 9 21 5 16 chain 21794 chr2 243199373 + 203313772 203314034 AluSp 311 + 14 285 121037 43 0 9 219 chain 39585 chr2 243199373 + 203318031 203318688 L1MA3 4352 + 3727 4352 69912 211 0 5 143 63 26 40 0 3 34 1 2 54 15 13 26 11 8 24 1 0 4 8 10 22 chain 4973 chr2 243199373 + 203326638 203326706 L1PA5 6144 - 2 67 195434 7 4 0 26 0 1 31 chain 28993 chr2 243199373 + 203335202 203335516 AluYb8 318 + 0 311 89022 132 3 0 179 chain 47379 chr2 243199373 + 203361450 203361990 LTR12C 1709 + 0 541 60915 435 0 1 105 chain 411350 chr2 243199373 + 203362044 203367030 HERV9-int 5642 + 12 4824 9765 79 4 3 333 31 27 341 1 0 66 1 0 49 4 0 119 160 0 78 4 0 1146 1 0 323 1 2 2237 0 1 8 chain 5243 chr2 243199373 + 203363169 203363230 HERV9-int 5642 + 1046 1107 192593 61 chain 119233 chr2 243199373 + 203367926 203369340 LTR12C 1709 + 0 1709 31320 41 11 14 227 1 14 354 0 278 182 1 0 7 3 1 106 0 4 481 chain 26569 chr2 243199373 + 203378849 203379147 AluYf4 310 - 1 299 97765 298 chain 27641 chr2 243199373 + 203392226 203392525 AluYb8 318 + 0 297 94238 132 2 0 165 chain 154466 chr2 243199373 + 203399004 203400796 SVA_F 1814 - 26 1814 24051 259 1 0 273 0 37 130 0 1 8 94 37 4 0 1 75 0 15 948 chain 2173 chr2 243199373 + 203399675 203399700 SVA_F 1814 - 684 725 172169 9 1 0 6 0 17 9 chain 2173 chr2 243199373 + 203399720 203399769 SVA_F 1814 - 771 821 119073 4 0 1 45 chain 46662 chr2 243199373 + 203442722 203443228 SVA_F 1814 + 1307 1814 61486 491 0 1 15 chain 9418 chr2 243199373 + 203451604 203451731 AluSq4 311 - 7 137 163473 22 0 2 17 3 4 85 chain 10701 chr2 243199373 + 203463340 203463561 L1PB1 5432 - 8 194 157410 11 1 0 9 5 4 8 1 0 22 1 0 24 19 0 14 1 0 5 3 1 17 5 0 9 2 0 4 1 0 16 1 0 42 chain 188990 chr2 243199373 + 203470212 203472271 L1PA3long 6157 - 0 2058 20148 1285 6 5 768 chain 25001 chr2 243199373 + 203485716 203486004 AluSp 311 - 5 296 104775 212 0 3 76 chain 26159 chr2 243199373 + 203497917 203498226 AluSp 311 - 5 311 99369 10 2 0 193 1 0 103 chain 27136 chr2 243199373 + 203510002 203510310 AluYf4 310 - 10 309 95809 15 9 0 284 chain 42396 chr2 243199373 + 203515195 203515741 MLT2A2 560 - 0 560 66157 8 0 4 135 0 11 57 0 1 140 0 1 5 4 1 197 chain 21560 chr2 243199373 + 203516531 203516795 AluSp 311 + 37 301 121922 264 chain 24102 chr2 243199373 + 203541098 203541395 AluSp 311 - 8 306 109736 171 1 0 66 0 2 59 chain 6828 chr2 243199373 + 203543286 203543366 AluSp 311 - 16 96 178733 80 chain 11302 chr2 243199373 + 203543389 203543522 AluSp 311 - 122 253 155052 64 2 0 67 chain 13317 chr2 243199373 + 203544998 203545142 L1PA4 6152 + 5997 6141 147018 144 chain 11372 chr2 243199373 + 203578730 203579245 L1MA3 4352 - 3303 3817 54753 121 1 3 50 1 0 6 1 0 6 2 0 16 2 1 17 0 2 33 0 1 21 8 6 42 57 56 53 1 3 77 chain 134870 chr2 243199373 + 203579256 203580799 SVA_D 2077 - 1 2020 27044 202 1 0 420 0 1 8 0 1 43 0 304 4 0 1 7 0 51 31 0 1 9 0 1 38 1 38 20 0 40 206 0 40 553 chain 10025 chr2 243199373 + 203580841 203581295 L1MA3 4352 - 3834 4290 54753 68 0 5 69 24 23 36 31 33 128 1 0 66 3 0 28 chain 13220 chr2 243199373 + 203591475 203591666 L1PA6 6164 + 5972 6161 147391 30 8 10 5 2 0 137 2 0 7 chain 11504 chr2 243199373 + 203592158 203592457 MER2 342 + 22 314 154283 29 81 80 4 0 1 90 26 25 42 3 2 10 5 0 9 chain 88035 chr2 243199373 + 203597694 203598816 MER11A 1151 - 0 1145 40359 13 0 1 26 0 4 19 4 3 191 0 32 450 0 1 22 0 1 38 33 0 45 0 11 66 2 1 140 0 8 73 chain 12384 chr2 243199373 + 203600517 203600657 L1PA4 6152 - 9 149 150693 140 chain 128891 chr2 243199373 + 203617640 203619203 L1PA8A 6298 + 4729 6289 28335 95 0 1 35 3 1 314 0 5 309 2 5 76 19 6 91 2 0 268 0 1 219 0 3 20 3 4 107 chain 3250 chr2 243199373 + 203619292 203619329 MSTA 426 - 31 68 219999 37 chain 28288 chr2 243199373 + 203650987 203651288 AluYb8 318 + 0 298 91987 123 3 0 175 chain 31081 chr2 243199373 + 203668645 203669209 LTR10E 629 + 0 585 82379 18 0 2 5 10 8 13 2 1 95 0 4 14 44 41 33 38 63 237 40 36 15 chain 65801 chr2 243199373 + 203673432 203674984 L1M1 2793 + 665 1717 50194 21 1 0 4 56 43 7 2 0 5 2 0 20 69 44 22 2 0 8 1 0 53 6 4 5 1 0 102 1 0 106 3 0 5 0 3 62 9 12 57 2 0 19 459 6 89 0 1 24 2 1 259 0 2 68 chain 89339 chr2 243199373 + 203674984 203676029 MER11C 1089 + 0 1073 39870 55 0 13 245 0 4 229 0 1 52 0 1 110 0 1 76 0 8 278 chain 25458 chr2 243199373 + 203683236 203683580 THE1B 368 + 0 368 102420 44 0 15 116 1 0 21 1 3 107 5 13 49 chain 11409 chr2 243199373 + 203698468 203698751 L1MA8 2339 + 1926 2223 154649 6 2 0 22 2 0 34 9 44 54 6 0 7 1 0 8 4 9 9 3 0 5 15 0 33 12 21 14 12 6 25 chain 22037 chr2 243199373 + 203712527 203712801 L1PA16 3655 + 3313 3584 120081 265 3 0 6 chain 466931 chr2 243199373 + 203714182 203723359 L1PA8 5853 + 50 5853 8153 22 2 0 10 1 0 13 52 16 158 4 3 28 20 8 291 0 4 45 0 2 40 1 0 105 0 1 9 0 7 535 1 0 57 0 1 141 2753 0 360 0 2 44 5 7 58 4 1 512 256 0 358 1 0 46 3 7 14 5 16 26 1 0 7 0 1 168 30 0 74 3 7 56 324 0 67 0 6 216 1 0 881 6 12 223 0 1 293 0 2 44 0 3 27 2 1 429 1 0 49 1 0 44 2 0 70 2 1 61 2 1 19 2 1 92 chain 99922 chr2 243199373 + 203715735 203716882 L1PA5 6144 - 0 1152 36805 113 1 0 491 1 2 239 0 5 302 chain 24911 chr2 243199373 + 203740109 203740410 AluSp 311 - 10 311 105274 301 chain 6049 chr2 243199373 + 203762674 203762746 Tigger4b 360 + 175 247 184818 72 chain 103185 chr2 243199373 + 203767889 203769872 L1MA3 4352 + 1953 3558 35954 118 1 2 40 12 21 108 87 19 52 1 0 18 50 23 12 0 4 20 0 13 66 20 25 69 340 0 26 1 0 35 2 1 88 0 3 8 0 1 181 8 9 26 0 20 33 0 1 33 5 4 67 5 1 147 0 6 191 4 6 104 1 0 4 chain 35088 chr2 243199373 + 203787138 203788416 L1PB 1623 + 973 1574 76064 61 3 0 38 328 7 102 314 0 38 13 4 81 2 1 73 0 5 56 17 15 30 1 0 4 3 0 13 5 1 14 1 0 8 55 32 18 chain 11930 chr2 243199373 + 203798675 203798886 MER30 238 - 1 237 152481 46 3 0 31 3 9 21 4 20 57 23 29 23 chain 57613 chr2 243199373 + 203810855 203811523 L1PA8 5853 + 4328 5003 54177 360 1 0 170 0 5 25 0 3 112 chain 6245 chr2 243199373 + 203811524 203811596 L1PA8 5853 + 5013 5085 183207 72 chain 50713 chr2 243199373 + 203811596 203812251 L1PA8 5853 + 5091 5740 58494 473 1 0 45 2 0 70 1 0 14 18 16 31 chain 9048 chr2 243199373 + 203812253 203812366 L1PA8 5853 + 5741 5853 165325 21 1 0 91 chain 58814 chr2 243199373 + 203812732 203813711 L1PREC2 3366 - 330 1275 53515 26 6 4 34 47 30 20 70 55 10 6 3 4 1 0 44 1 0 54 6 5 36 1 0 116 4 3 76 3 11 84 0 2 5 2 0 323 chain 22066 chr2 243199373 + 203823360 203823647 AluSc 308 + 8 300 119938 18 17 22 252 chain 11523 chr2 243199373 + 203845823 203846102 MER1B 344 - 0 297 154201 59 19 17 66 101 121 34 chain 89399 chr2 243199373 + 203872726 203873776 MER11C 1089 + 0 1063 39842 176 0 2 72 0 1 62 0 4 373 0 4 43 0 1 188 2 3 134 chain 3603 chr2 243199373 + 203893553 203893595 L1MC2 1988 - 0 42 213595 42 chain 20397 chr2 243199373 + 203912881 203913123 AluSc5 308 + 57 299 125905 242 chain 3585 chr2 243199373 + 203918613 203918674 L1MC2 1988 - 1131 1194 213895 25 10 12 26 chain 25810 chr2 243199373 + 203930197 203930490 AluY 311 + 4 298 100825 128 0 1 165 chain 61725 chr2 243199373 + 203931062 203931845 SVA_A 1864 - 263 1372 52024 269 0 148 14 0 68 118 8 42 57 1 0 13 3 0 32 2 0 205 3 82 14 0 3 44 chain 13007 chr2 243199373 + 203937236 203937538 MLT1A-int 1186 - 867 1156 148221 7 1 0 20 12 9 14 0 1 36 12 9 73 68 64 28 2 0 17 1 0 11 chain 23008 chr2 243199373 + 203963725 203964016 AluSp 311 + 10 299 115587 42 14 13 67 1 0 167 chain 156495 chr2 243199373 + 203965575 203967975 L1PA15 4387 - 505 2656 23798 43 33 28 210 0 52 15 0 2 29 0 2 69 0 1 12 0 1 250 3 2 82 310 0 558 0 3 665 1 2 51 8 6 11 1 0 4 19 27 26 chain 5401 chr2 243199373 + 203970203 203970274 L1PA15 4387 - 4018 4088 190974 35 1 0 35 chain 6393 chr2 243199373 + 203978305 203978381 MLT1B 390 - 10 86 182080 76 chain 10288 chr2 243199373 + 203996294 203996430 MER85 139 + 4 139 159194 97 5 4 34 chain 13811 chr2 243199373 + 204001893 204002132 MER30 238 + 0 238 145219 18 15 13 76 4 23 27 21 3 78 chain 10881 chr2 243199373 + 204015260 204015445 L1MB5 1630 - 980 1148 156656 31 1 0 8 34 18 111 chain 19111 chr2 243199373 + 204017091 204017317 AluSq 315 + 62 289 129788 72 0 1 154 chain 11743 chr2 243199373 + 204050113 204050263 L1PA7 6471 + 6322 6468 153286 130 1 0 6 3 0 10 chain 123807 chr2 243199373 + 204071104 204072520 SVA_D 2077 + 0 1947 29768 12 2 0 9 2 0 16 2 5 12 0 1 168 3 0 502 0 3 33 3 0 117 0 535 260 1 0 274 chain 23971 chr2 243199373 + 204094749 204095101 THE1B 368 + 0 366 110503 104 1 0 65 1 0 29 30 45 100 6 7 16 chain 122974 chr2 243199373 + 204095103 204096653 THE1B-int 1605 + 0 1590 30058 10 4 3 163 1 0 249 15 42 150 6 20 373 6 5 41 0 2 532 chain 23601 chr2 243199373 + 204096667 204097024 THE1B 368 + 0 366 112581 108 5 4 57 1 0 29 30 45 33 9 5 85 chain 3404 chr2 243199373 + 204099626 204099668 LTR32 486 + 13 55 217007 42 chain 38171 chr2 243199373 + 204118182 204118659 LTR61 567 - 10 473 71883 51 1 0 281 10 0 41 3 0 90 chain 5005 chr2 243199373 + 204122543 204122627 L1MA3 4352 - 20 98 195081 4 1 0 14 1 0 26 1 0 6 1 0 22 2 0 6 chain 17749 chr2 243199373 + 204124326 204124532 AluSx4 309 + 1 207 133570 206 chain 28759 chr2 243199373 + 204156414 204156732 L1PA4 6152 - 12 330 90073 318 chain 22350 chr2 243199373 + 204158999 204159269 AluSp 311 + 21 308 118701 172 0 17 98 chain 24050 chr2 243199373 + 204160388 204160687 AluSc 308 + 0 296 110041 62 3 0 234 chain 10897 chr2 243199373 + 204162009 204162279 AluSq 315 + 0 134 156599 20 136 0 114 chain 124933 chr2 243199373 + 204172615 204174186 THE1B-int 1605 + 0 1605 29416 295 2 3 132 1 26 14 4 11 10 1 2 965 0 1 76 1 0 70 chain 22149 chr2 243199373 + 204174186 204174535 THE1B 368 + 0 368 119596 40 0 15 25 5 2 82 1 0 8 3 1 25 35 45 125 chain 61671 chr2 243199373 + 204209355 204210191 LTR12 884 + 2 878 52048 293 1 43 38 2 0 134 5 4 130 15 16 38 0 1 9 1 0 170 chain 26825 chr2 243199373 + 204227906 204228480 L1MA3 4352 - 20 490 96895 4 1 0 15 4 3 22 1 0 6 1 0 24 2 0 55 1 3 21 1 0 11 7 8 26 149 43 96 3 9 124 chain 4869 chr2 243199373 + 204229141 204229197 tRNA-Gly-GGG 71 - 11 67 196607 56 chain 137435 chr2 243199373 + 204236664 204238195 SVA_D 2077 - 12 2035 26568 664 1 50 64 0 396 173 0 6 5 0 1 67 0 40 557 chain 6583 chr2 243199373 + 204240894 204241089 MER20 218 + 3 200 180590 16 3 4 30 1 4 20 84 82 41 chain 25545 chr2 243199373 + 204249859 204250153 AluYf4 310 - 14 310 102022 21 0 2 273 chain 29273 chr2 243199373 + 204273552 204273860 AluYb8 318 - 10 318 87681 308 chain 26377 chr2 243199373 + 204280060 204280366 AluY 311 + 2 309 98503 130 0 1 176 chain 6568 chr2 243199373 + 204349057 204349172 MER20 218 - 3 125 180713 13 7 13 18 11 12 66 chain 22581 chr2 243199373 + 204367299 204367560 AluY 311 + 37 300 117665 94 0 2 167 chain 126049 chr2 243199373 + 204368328 204369901 THE1A-int 1579 - 9 1579 29081 938 1 0 14 11 10 31 0 2 70 42 0 8 0 37 18 8 10 432 chain 23937 chr2 243199373 + 204394081 204394385 AluSp 311 - 14 311 110708 6 5 0 159 2 0 132 chain 12656 chr2 243199373 + 204395978 204396135 L1PA6 6164 + 6005 6162 149618 157 chain 31604 chr2 243199373 + 204401416 204401807 L1PA5 6144 + 5752 6144 81478 229 0 2 5 7 6 150 chain 25892 chr2 243199373 + 204402998 204403341 THE1B 368 - 0 355 100475 49 5 13 133 2 1 127 1 6 26 chain 22454 chr2 243199373 + 204410148 204410433 AluY 311 + 0 268 118223 118 1 0 15 23 7 128 chain 30263 chr2 243199373 + 204420699 204421046 L1PA7 6471 + 6116 6470 84025 21 1 0 44 0 8 281 chain 4612 chr2 243199373 + 204429730 204429790 L1MA5A 2387 - 81 140 199492 10 1 0 49 chain 29948 chr2 243199373 + 204441782 204442153 L1PA8A 6298 - 6 376 84975 109 7 0 204 4 8 7 0 2 40 chain 2579 chr2 243199373 + 204449640 204449800 MIR 256 + 62 236 231925 26 68 72 12 0 1 4 1 0 4 30 40 15 chain 41257 chr2 243199373 + 204505844 204506466 L1MA2 4263 - 332 971 67583 110 19 34 69 2 5 50 0 1 76 6 6 176 1 0 24 24 22 23 13 14 29 chain 118554 chr2 243199373 + 204506591 204508114 LTR12C 1709 - 0 1709 31603 84 1 0 397 11 4 40 1 0 66 3 1 5 1 0 88 0 41 74 4 3 39 0 118 144 0 1 23 14 11 105 5 1 83 0 43 36 0 1 5 6 7 82 0 1 206 chain 18765 chr2 243199373 + 204508114 204508338 AluY 311 + 70 295 130785 62 0 1 162 chain 23875 chr2 243199373 + 204510267 204510538 AluY 311 + 0 310 111054 124 0 39 147 chain 23136 chr2 243199373 + 204529117 204529711 L1PA8A 6298 - 10 302 114963 40 0 1 150 310 7 94 chain 32855 chr2 243199373 + 204532909 204533353 MLT2A1 477 + 0 477 79446 168 5 2 12 0 1 21 0 1 179 22 56 37 chain 28737 chr2 243199373 + 204537928 204538297 LTR12F 595 - 124 595 90180 108 0 1 119 0 106 33 6 1 103 chain 2719 chr2 243199373 + 204554072 204554137 L1P4 1494 + 1384 1444 229905 6 2 0 13 13 10 31 chain 347754 chr2 243199373 + 204562250 204567543 L1PA8 5853 + 1628 5852 11672 124 5 12 104 0 1 97 0 2 569 1 3 58 1 2 84 0 1 373 314 0 556 4 3 5 0 2 181 0 1 138 776 0 26 0 3 882 1 0 38 0 2 32 0 1 81 0 2 6 0 1 64 0 2 298 0 2 180 1 0 44 2 0 70 5 4 6 1 0 47 7 6 19 1 0 92 chain 29438 chr2 243199373 + 204564911 204565255 L1PA8 5853 + 5145 5491 86900 240 0 2 104 chain 5935 chr2 243199373 + 204597929 204598002 MER20 218 - 70 146 185827 66 0 3 7 chain 28467 chr2 243199373 + 204633514 204633826 L1PA2 6032 - 1 312 91313 13 1 0 298 chain 26412 chr2 243199373 + 204643665 204643971 AluY 311 + 2 308 98363 132 0 1 142 1 0 31 chain 28879 chr2 243199373 + 204644345 204644772 LTR12F 595 - 0 595 89548 73 0 4 167 0 64 24 0 130 29 6 1 9 10 0 4 15 0 90 chain 7598 chr2 243199373 + 204646773 204646866 U6 107 + 14 107 173556 93 chain 127691 chr2 243199373 + 204649366 204650863 LTR12C 1709 - 0 1709 28648 67 0 4 410 0 4 34 0 207 146 1 0 257 10 9 270 1 2 83 2 0 216 chain 23628 chr2 243199373 + 204664131 204664423 AluSp 311 + 9 300 112419 102 2 1 188 chain 5230 chr2 243199373 + 204664911 204665053 L1M4 1397 + 803 942 192719 7 1 0 15 57 55 62 chain 3585 chr2 243199373 + 204665286 204665329 MLT1A0 366 + 261 305 213903 13 0 1 30 chain 23997 chr2 243199373 + 204692325 204692670 THE1B 368 + 0 368 110347 69 0 14 86 1 0 23 41 51 125 chain 2838 chr2 243199373 + 204693731 204693775 MLT1E2 623 - 518 558 228125 26 0 1 5 5 0 8 chain 3581 chr2 243199373 + 204699657 204699702 LTR50 688 - 592 637 213958 45 chain 8375 chr2 243199373 + 204731142 204731236 L1PA4 6152 + 6057 6151 168996 94 chain 30948 chr2 243199373 + 204745960 204746418 MLT2A1 477 + 0 477 82603 169 2 16 19 0 1 176 59 63 33 chain 19243 chr2 243199373 + 204760643 204760870 L1PA8 5853 + 5381 5608 129403 139 0 1 42 2 1 44 chain 6545 chr2 243199373 + 204760872 204760942 L1PA8 5853 + 5608 5678 180883 70 chain 10158 chr2 243199373 + 204760960 204761103 L1PA8 5853 + 5700 5841 159813 40 2 1 19 3 2 79 chain 13813 chr2 243199373 + 204795471 204795762 THE1B 368 - 61 368 145207 67 1 0 4 13 12 10 10 21 19 6 5 52 47 49 15 0 6 47 chain 16377 chr2 243199373 + 204795762 204795963 THE1D-int 1627 + 1419 1622 137270 158 1 0 12 0 3 30 chain 121900 chr2 243199373 + 204807574 204809187 L1PBa1 4058 - 2243 3859 30413 146 1 0 334 3 0 23 10 11 171 2 3 196 9 8 20 0 14 259 8 7 57 9 8 126 3 1 116 10 5 46 1 2 63 chain 2491 chr2 243199373 + 204826855 204826973 LTR7 482 - 193 393 233212 25 50 133 16 15 14 12 chain 291398 chr2 243199373 + 204828335 204831998 HERVH-int 3825 - 1 3825 13936 120 0 1 103 0 2 231 37 247 39 9 11 663 0 1 108 0 1 287 0 4 50 1 0 240 4 31 215 1 0 13 15 17 9 9 0 304 0 3 345 0 1 67 21 0 12 2 1 12 44 0 30 30 6 10 5 22 14 7 1 11 4 0 12 1 0 10 1 0 20 4 5 4 1 0 11 1 0 27 0 4 499 chain 28908 chr2 243199373 + 204851607 204851912 AluYb8 318 - 13 318 89426 305 chain 8715 chr2 243199373 + 204852520 204852728 L1PB1 5432 + 5237 5424 167112 44 1 0 14 1 0 6 60 45 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 9029 chr2 243199373 + 204860699 204860826 Tigger3b 1229 - 383 512 165447 63 11 13 53 chain 14915 chr2 243199373 + 204860826 204861004 L1PA4 6152 + 5965 6143 141588 178 chain 7370 chr2 243199373 + 204866336 204866420 FAM 185 + 67 151 174975 84 chain 66529 chr2 243199373 + 204900459 204901231 L1PA6 6164 + 5379 6151 49852 772 chain 18001 chr2 243199373 + 204926467 204926721 L1PA8 5853 - 0 265 132851 93 1 0 17 7 7 42 1 0 6 2 1 8 0 16 55 2 0 20 chain 31619 chr2 243199373 + 204984298 204984691 MER41A 554 - 7 400 81452 393 chain 28201 chr2 243199373 + 205014739 205015047 AluY 311 + 3 311 92305 308 chain 27452 chr2 243199373 + 205023681 205023975 AluYa5 310 - 8 302 94810 294 chain 22730 chr2 243199373 + 205046990 205047305 L1PB2 3958 + 3528 3838 116922 17 1 0 72 1 0 64 1 0 59 0 1 12 2 0 22 1 0 63 chain 5561 chr2 243199373 + 205095827 205095919 MER45A 178 + 74 165 189473 46 12 11 34 chain 19655 chr2 243199373 + 205147732 205147963 L1PA4 6152 - 12 244 128235 143 0 1 88 chain 20034 chr2 243199373 + 205152614 205152855 L1P1 4361 - 20 258 127029 12 2 1 23 1 0 155 1 0 47 chain 9120 chr2 243199373 + 205204000 205204145 MER2 342 + 143 291 164968 51 15 20 38 2 0 39 chain 17346 chr2 243199373 + 205223326 205223531 AluSg7 307 + 28 234 134669 103 0 1 102 chain 51733 chr2 243199373 + 205247291 205249041 L1PA10 4194 - 1714 3184 28968 24 0 1 119 0 1 109 1 5 232 15 0 143 306 0 125 5 10 61 1 0 4 0 1 245 0 30 4 0 1 74 1 5 13 13 5 140 4 7 111 chain 48094 chr2 243199373 + 205249110 205249628 L1PA3long 6157 - 0 518 60404 518 chain 146568 chr2 243199373 + 205249630 205251283 L1HS 6032 + 947 2600 25078 1653 chain 8396 chr2 243199373 + 205251283 205251567 L1PA10 4194 - 3187 3491 28968 27 1 21 46 4 5 21 2 1 183 chain 22137 chr2 243199373 + 205252744 205253158 MSTC 436 + 16 436 119634 89 5 6 28 28 5 14 53 81 13 17 17 167 chain 4980 chr2 243199373 + 205256516 205256587 MADE1 96 - 0 88 195356 26 0 1 16 1 17 28 chain 26456 chr2 243199373 + 205276684 205277042 THE1B 368 + 0 368 98220 44 0 15 44 0 2 97 2 0 47 5 0 119 chain 125449 chr2 243199373 + 205277042 205278616 THE1B-int 1605 + 0 1599 29261 43 9 10 253 1 2 66 2 1 57 0 25 1076 1 0 66 chain 26165 chr2 243199373 + 205278622 205278975 THE1B 368 + 0 368 99348 44 6 21 48 0 1 46 13 12 30 2 0 82 0 2 82 chain 3322 chr2 243199373 + 205301489 205301544 MER53 195 - 135 194 218530 21 5 9 29 chain 4670 chr2 243199373 + 205308092 205308331 L1MA8 2339 + 2108 2319 198862 6 0 7 29 13 10 14 67 59 23 1 0 10 56 33 20 chain 344923 chr2 243199373 + 205310592 205328812 L1PA7 6471 - 6 4669 11758 6 3 0 131 1 0 4 4 11 692 1 0 355 38 1 515 13645 118 630 1 0 17 0 1 157 1 0 142 11 10 50 7 0 3 1 0 74 0 4 15 0 2 188 1 2 60 3 5 29 4 0 6 16 20 318 6 10 122 8 12 67 0 1 46 5 0 55 0 1 556 0 1 226 chain 149071 chr2 243199373 + 205328812 205330767 L1PA7 6471 + 4656 6459 24735 229 0 1 67 157 5 318 7 0 338 0 3 514 0 1 80 1 0 101 1 4 142 chain 42402 chr2 243199373 + 205349795 205350330 MER41A 554 + 13 554 66144 135 1 2 318 4 8 58 1 2 18 chain 29191 chr2 243199373 + 205374342 205374653 AluYa5 310 - 0 310 88094 101 1 0 209 chain 6561 chr2 243199373 + 205374779 205374855 L1MA3 4352 + 3996 4072 180774 76 chain 16563 chr2 243199373 + 205374934 205375287 L1PB1 5432 - 10 327 136759 13 6 5 13 1 0 21 1 0 21 20 17 5 2 0 19 24 12 14 6 5 41 1 0 17 2 1 50 2 0 9 2 0 3 2 0 9 1 0 13 1 0 19 5 0 10 chain 3681 chr2 243199373 + 205413124 205413168 MIR 256 - 85 129 212204 44 chain 33673 chr2 243199373 + 205417218 205417648 L1PB1 5432 - 950 1380 78141 115 11 12 58 1 0 160 1 0 46 0 1 38 chain 53382 chr2 243199373 + 205417660 205418751 L1PB1 5432 + 4498 5420 56779 130 4 0 76 3 4 97 39 39 10 0 8 162 0 2 77 175 11 20 1 0 5 3 0 7 1 0 10 2 0 3 2 0 10 2 0 50 1 0 18 1 0 7 88 94 8 2 0 24 1 0 21 1 0 8 6 5 16 chain 164131 chr2 243199373 + 205422982 205424912 L1PA6 6164 + 4216 6155 22790 154 0 4 304 0 1 639 0 4 159 0 1 665 1 0 8 chain 62156 chr2 243199373 + 205447691 205448361 L1PA2 6032 + 5362 6032 51828 670 chain 9831 chr2 243199373 + 205508264 205508464 MER30 238 + 40 237 161441 67 4 23 22 0 6 8 6 0 15 21 2 16 13 10 28 chain 6121 chr2 243199373 + 205514360 205514505 L1PREC2 3366 + 2922 3048 184264 30 3 0 11 22 8 16 24 22 39 chain 117674 chr2 243199373 + 205610705 205612022 L1PA5 6144 - 0 1321 31901 113 1 0 491 1 2 237 0 4 474 chain 39570 chr2 243199373 + 205612022 205612483 L1PA5 6144 + 4350 4815 69818 277 3 8 23 1 0 157 chain 26720 chr2 243199373 + 205627472 205627782 AluSp 311 - 1 311 97260 310 chain 331352 chr2 243199373 + 205631721 205635263 L1HS 6032 - 0 3542 12150 3542 chain 125850 chr2 243199373 + 205665332 205666840 L1PA7 6471 - 897 2413 29143 489 4 0 32 0 1 105 0 1 268 1 9 27 0 2 19 1 0 253 1 0 4 0 1 161 0 1 143 chain 72284 chr2 243199373 + 205666848 205667706 L1PA7 6471 + 5591 6454 47343 30 0 3 671 0 2 157 chain 16009 chr2 243199373 + 205668378 205668629 L1MA3 4352 + 37 288 138327 65 7 11 42 1 0 15 13 11 41 2 1 65 chain 36681 chr2 243199373 + 205686012 205686426 L1PA3long 6157 + 5736 6157 73985 276 0 7 138 chain 13406 chr2 243199373 + 205686467 205686651 THE1B 368 + 178 368 146688 20 2 0 108 5 13 49 chain 22693 chr2 243199373 + 205696680 205696954 AluY 311 + 17 288 117105 114 3 0 157 chain 19451 chr2 243199373 + 205698192 205698485 THE1B 368 + 1 306 128817 168 1 0 23 35 48 66 chain 32558 chr2 243199373 + 205741752 205742126 L1PA5 6144 + 5770 6140 79933 182 4 0 188 chain 21221 chr2 243199373 + 205749715 205750158 L1PA11 4918 - 289 696 123141 18 137 107 16 2 1 13 2 0 66 6 5 8 1 0 70 1 0 103 chain 47937 chr2 243199373 + 205823701 205824333 L1PA8 5853 - 5 629 60534 88 1 0 9 1 0 50 10 8 14 1 0 71 2 0 31 9 6 5 0 2 340 chain 4100 chr2 243199373 + 205855131 205855187 L1MA4 2864 - 58 112 205939 39 2 0 15 chain 556879 chr2 243199373 + 205855795 205861829 L1PA2 6032 - 0 6031 620 22 3 0 6009 chain 14901 chr2 243199373 + 205862854 205863039 L1PA7 6471 + 6271 6457 141625 47 2 3 136 chain 4458 chr2 243199373 + 205906426 205906477 Helitron3Na_Mam 445 - 2 53 201262 51 chain 91633 chr2 243199373 + 205908532 205909542 L1PA3long 6157 - 1 1016 39077 337 0 1 510 0 4 163 chain 26756 chr2 243199373 + 205991212 205991506 AluYb8 318 + 29 318 97144 97 5 0 192 chain 180553 chr2 243199373 + 206015860 206018039 L1P2 5180 - 2399 4585 20938 457 23 9 79 0 14 32 0 2 445 0 2 311 8 13 624 1 0 5 2 1 192 chain 142322 chr2 243199373 + 206018129 206019769 L1PA5 6144 + 4492 6135 25757 1039 0 1 437 3 5 161 chain 25551 chr2 243199373 + 206020350 206020631 L1PA3long 6157 - 578 859 101985 281 chain 47107 chr2 243199373 + 206020631 206021146 L1PA3long 6157 + 5643 6157 61123 6 1 0 508 chain 7492 chr2 243199373 + 206043487 206043580 Tigger3c 601 + 0 93 174196 93 chain 223326 chr2 243199373 + 206068182 206070849 L1PA7 6471 - 1 2679 17695 4 1 0 18 0 4 65 0 1 56 8 1 7 0 7 689 1 4 369 0 1 572 7 11 832 1 0 37 chain 49240 chr2 243199373 + 206070940 206071484 L1PA2 6032 - 1 545 59560 544 chain 161555 chr2 243199373 + 206071484 206073304 L1P1 4361 + 2524 4341 23121 1627 1 0 154 1 0 23 2 1 12 chain 3166 chr2 243199373 + 206089651 206089685 L1PA6 6164 - 4 38 221616 34 chain 6204 chr2 243199373 + 206090635 206090714 L1MA2 4263 - 747 829 183554 73 0 3 6 chain 27681 chr2 243199373 + 206119376 206119687 AluYf4 310 - 1 310 94112 45 2 0 264 chain 4834 chr2 243199373 + 206148468 206148525 L1MB2 1706 - 12 69 196967 57 chain 13565 chr2 243199373 + 206156948 206157187 MLT1A0 366 + 110 348 146113 38 10 7 39 22 21 81 6 10 32 1 0 10 chain 8737 chr2 243199373 + 206169997 206170105 LTR54B 464 - 345 459 166999 82 0 6 26 chain 18478 chr2 243199373 + 206200328 206200757 THE1B 368 - 12 367 131566 37 4 8 100 11 9 28 3 2 51 149 74 46 chain 3942 chr2 243199373 + 206200583 206200630 THE1B 368 - 200 247 208239 47 chain 8167 chr2 243199373 + 206219096 206219191 L1PA5 6144 + 6046 6141 170132 95 chain 53640 chr2 243199373 + 206281660 206282282 L1PA6 6164 - 4 626 56594 622 chain 144330 chr2 243199373 + 206354851 206368809 L1PA4 6152 - 13 1912 25423 428 7 9 276 1 0 67 0 3 54 0 4 282 1 0 190 12065 0 197 1 0 389 chain 114975 chr2 243199373 + 206368809 206370113 L1PA4 6152 + 4832 6143 32703 466 0 4 832 0 3 6 chain 220691 chr2 243199373 + 206380439 206383663 L1PA14 3548 - 63 3458 17837 20 1 0 10 6 0 41 1 0 18 1 0 9 1 0 9 4 2 30 4 0 14 1 0 77 3 0 14 0 5 12 4 3 84 1 0 4 2 0 15 13 9 104 2 0 4 2 0 48 2 0 10 6 5 16 21 56 107 17 5 66 1 0 122 0 3 26 3 2 67 0 4 477 14 16 68 3 188 212 1 0 155 4 0 112 0 1 55 1 2 4 1 0 56 1 2 259 0 4 135 1 4 47 4 0 157 3 4 41 1 0 76 0 1 89 2 0 21 17 15 20 7 6 20 1 0 25 17 12 32 4 0 58 chain 26831 chr2 243199373 + 206437579 206437952 THE1C 375 - 0 375 96869 26 1 0 103 0 1 39 0 3 7 15 14 114 0 2 50 2 0 16 chain 191795 chr2 243199373 + 206466507 206468922 L1PA10 4194 - 503 2951 19884 62 0 1 490 2 0 7 0 2 209 4 7 22 0 3 25 0 1 69 0 2 77 0 4 35 0 4 48 1 0 76 1 2 83 0 1 224 1 11 405 0 1 150 6 7 15 5 7 398 chain 13275 chr2 243199373 + 206484916 206485124 MER30 238 - 2 238 147192 43 0 3 72 5 0 6 6 18 48 4 22 24 chain 28047 chr2 243199373 + 206489239 206489590 THE1A 353 - 2 351 92835 257 1 0 46 0 1 34 2 0 11 chain 4532 chr2 243199373 + 206489661 206489723 L1MA6 2487 + 2339 2398 200430 40 3 0 19 chain 11397 chr2 243199373 + 206531388 206531606 L1MA4A 3247 - 73 333 154713 20 0 55 128 44 36 13 5 0 8 chain 3309 chr2 243199373 + 206640711 206640754 MIRb 242 + 90 133 218787 43 chain 16987 chr2 243199373 + 206688290 206688506 AluSg7 307 + 10 225 135629 54 2 0 67 0 1 10 3 0 7 0 3 73 chain 19345 chr2 243199373 + 206719625 206719927 THE1B 368 - 61 368 129092 64 9 8 21 0 4 10 30 32 168 chain 50648 chr2 243199373 + 206759096 206759891 L1PB1 5432 + 4656 5420 58538 58 2 0 102 0 4 25 0 1 52 1 0 205 1 2 9 3 0 24 1 0 9 1 0 4 22 16 53 2 1 15 1 0 44 1 0 6 81 63 21 1 0 34 1 0 16 chain 11204 chr2 243199373 + 206765353 206765596 7SK 245 + 0 245 155403 84 95 97 64 chain 19415 chr2 243199373 + 206783644 206783970 THE1D 372 + 0 350 128906 38 7 9 14 4 14 91 24 27 41 2 1 7 0 7 46 0 4 37 2 1 13 chain 34364 chr2 243199373 + 206802744 206803197 LTR7B 505 - 11 505 77114 40 14 13 79 1 0 82 0 2 26 3 27 28 4 11 71 0 10 105 chain 360 chr2 243199373 + 206803810 206803891 LTR9B 643 - 7 88 175169 26 0 1 5 1 0 49 chain 63138 chr2 243199373 + 206803891 206804649 LTR17 781 + 0 781 51386 327 1 0 82 0 1 301 10 33 37 chain 236 chr2 243199373 + 206805406 206805459 LTR9B 643 - 579 632 175169 53 chain 84475 chr2 243199373 + 206817695 206818740 MER11C 1089 - 26 1089 41728 199 0 1 125 0 1 38 1 0 7 0 4 26 1 0 96 30 31 218 0 4 57 0 9 247 chain 10171 chr2 243199373 + 206832626 206832753 LTR64 526 + 0 127 159749 127 chain 24788 chr2 243199373 + 206841463 206841765 AluSp 311 + 4 302 105952 278 4 0 20 chain 98909 chr2 243199373 + 206841781 206843153 LTR12C 1709 + 1 1709 37049 20 0 9 226 36 40 42 0 43 83 10 9 218 0 41 25 0 2 38 0 200 74 0 47 90 27 20 79 12 13 54 0 2 228 4 0 23 1 0 82 chain 26700 chr2 243199373 + 206843454 206843804 THE1B 368 + 0 368 97322 44 0 15 113 1 0 27 4 0 107 8 16 46 chain 47042 chr2 243199373 + 206848175 206848781 LTR71B 605 - 0 605 61172 43 1 0 181 0 1 55 5 1 143 0 3 30 3 0 9 0 3 136 chain 117719 chr2 243199373 + 206879424 206881339 THE1B-int 1605 + 0 1599 31887 432 13 38 431 323 10 97 0 1 293 7 8 208 4 0 7 16 0 32 34 24 18 chain 20852 chr2 243199373 + 206881344 206881720 THE1B 368 + 0 368 124455 12 3 1 27 0 5 45 13 14 15 25 15 35 31 30 94 1 0 75 chain 7559 chr2 243199373 + 206890316 206890419 HY3 101 + 0 100 173811 21 0 1 25 4 0 53 chain 314025 chr2 243199373 + 206897225 206901422 L1PB1 5432 + 986 5420 12853 91 0 1 156 1 0 161 30 23 17 14 14 152 7 12 138 7 251 111 0 1 379 7 0 225 8 0 44 0 3 74 4 3 154 0 5 554 1 0 16 0 3 102 0 11 44 10 1 204 0 1 268 0 2 20 0 1 58 0 5 75 4 11 249 3 0 104 9 0 4 3 0 280 4 6 83 1 6 5 1 0 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 12 10 1 18 20 37 6 1 0 21 1 0 13 1 0 16 chain 12099 chr2 243199373 + 206922652 206922837 L1M1 2793 - 1765 1948 151800 25 1 0 103 13 12 43 chain 29012 chr2 243199373 + 206929731 206932132 L1MA5A 2387 + 1176 2306 88933 135 1137 513 42 0 17 33 5 6 111 1 0 36 1 0 8 814 152 66 1 0 11 chain 5703 chr2 243199373 + 206933143 206933250 MER58A 224 + 4 106 188090 13 23 0 10 1 19 60 chain 3979 chr2 243199373 + 206962311 206962442 Tigger5 388 - 20 145 207705 23 28 27 15 11 9 23 1 0 13 6 4 11 chain 26364 chr2 243199373 + 206974784 206975089 AluY 311 + 6 311 98557 305 chain 22287 chr2 243199373 + 206979142 206979417 AluSp 311 - 19 303 118960 249 1 10 25 chain 17141 chr2 243199373 + 206982160 206982387 AluSg7 307 - 11 238 135202 141 6 5 18 0 1 62 chain 36251 chr2 243199373 + 206984997 206985542 MSTB-int 1649 + 17 567 74559 17 7 9 69 0 3 28 0 3 46 12 16 40 23 22 81 8 0 111 0 2 103 chain 3922 chr2 243199373 + 207010208 207010255 L1MC4 1079 + 191 238 208525 47 chain 8436 chr2 243199373 + 207034399 207034511 THE1B-int 1605 + 1487 1605 168649 35 0 5 67 1 2 9 chain 28954 chr2 243199373 + 207034854 207035210 THE1B-int 1605 - 1245 1605 89206 135 0 4 221 chain 139492 chr2 243199373 + 207035711 207037286 SVA_D 2077 - 3 1989 26222 133 0 20 463 0 98 62 0 107 88 0 185 386 0 1 443 chain 7778 chr2 243199373 + 207086452 207086548 MER34A 573 - 477 573 172429 96 chain 13529 chr2 243199373 + 207123304 207123520 AluSc8 310 + 48 289 146249 83 12 15 25 0 15 34 14 21 48 chain 15119 chr2 243199373 + 207159405 207159605 L1PA16 3655 - 89 292 140991 143 4 7 53 chain 2929 chr2 243199373 + 207161440 207161476 tRNA-Leu-CTA_ 78 - 42 78 226544 36 chain 3143 chr2 243199373 + 207161525 207161561 tRNA-Leu-CTA_ 78 - 42 78 222123 36 chain 22782 chr2 243199373 + 207162398 207162690 AluSp 311 - 16 297 116669 8 9 0 159 2 0 114 chain 119157 chr2 243199373 + 207184784 207186099 L1PA3long 6157 + 4838 6157 31357 466 0 4 590 1 0 254 0 1 4 chain 16888 chr2 243199373 + 207194763 207195003 L1PA8 5853 - 0 240 135870 89 1 4 17 1 0 50 1 0 14 5 4 62 chain 5741 chr2 243199373 + 207210020 207210091 MER41C 542 - 0 73 187726 32 0 2 39 chain 7920 chr2 243199373 + 207215117 207215216 THE1D-int 1627 - 1527 1627 171526 63 1 0 19 0 2 16 chain 147577 chr2 243199373 + 207220294 207222471 SVA_D 2077 - 0 2063 24948 136 0 20 476 0 1 27 25 24 4 0 1 48 1 0 6 0 78 163 0 1 54 2 4 40 441 96 132 0 1 34 0 40 49 0 40 222 0 4 283 0 42 10 1 4 23 chain 29416 chr2 243199373 + 207221289 207221617 SVA_F 1814 - 523 852 87000 17 1 0 97 0 1 175 0 1 38 chain 2564 chr2 243199373 + 207221639 207221717 SVA_D 2077 - 869 947 102639 78 chain 7981 chr2 243199373 + 207236507 207236674 L1MA7 2200 - 223 395 171160 28 2 0 44 5 9 18 26 31 18 1 0 11 1 0 13 chain 26048 chr2 243199373 + 207258381 207258741 THE1B 368 + 0 368 99833 44 0 15 116 1 0 23 4 0 105 3 0 5 3 4 56 chain 31448 chr2 243199373 + 207258752 207259457 THE1B-int 1605 + 1166 1569 81738 129 315 0 108 0 1 128 0 12 25 chain 11327 chr2 243199373 + 207261250 207261373 L1PA4 6152 + 6028 6151 154973 123 chain 113606 chr2 243199373 + 207264729 207266429 SVA_F 1814 - 0 1263 33200 637 52 0 140 351 0 65 49 0 10 1 15 10 0 1 385 chain 3702 chr2 243199373 + 207265366 207265406 SVA_F 1814 - 813 852 149534 7 1 0 32 chain 2708 chr2 243199373 + 207265558 207265586 SVA_F 1814 - 601 629 167693 28 chain 9139 chr2 243199373 + 207265587 207265831 SVA_F 1814 - 631 890 81587 174 1 2 44 1 15 24 chain 3298 chr2 243199373 + 207265831 207265909 SVA_F 1814 - 940 1177 143451 19 1 0 28 6 166 24 chain 1571 chr2 243199373 + 207265974 207266023 SVA_F 1814 - 666 715 152492 49 chain 15599 chr2 243199373 + 207270228 207270776 MER41A 554 - 0 213 139588 107 9 0 58 326 0 48 chain 517759 chr2 243199373 + 207271936 207280931 L1PA6 6164 - 2 6164 5395 847 1 0 159 2859 0 249 10 21 281 0 1 738 1 0 170 1 0 506 0 1 409 1 4 450 4 5 298 1 2 185 1 2 289 0 3 106 4 9 390 0 1 472 0 1 563 chain 11021 chr2 243199373 + 207285658 207285829 MER2 342 - 20 192 156122 19 23 24 129 chain 87149 chr2 243199373 + 207291804 207292780 L1PA5 6144 - 9 983 40711 841 1 0 73 1 0 60 chain 5052 chr2 243199373 + 207296493 207296572 MER53 195 - 105 185 194614 14 3 4 62 chain 435449 chr2 243199373 + 207359541 207364374 L1PA4 6152 + 1305 6152 9183 128 2 1 256 1 0 2762 0 3 849 0 4 70 0 1 5 0 1 409 0 3 213 0 4 138 chain 21942 chr2 243199373 + 207408351 207408834 L1PB1 5432 + 4982 5422 120450 99 55 33 24 1 0 6 1 0 14 5 1 9 2 0 52 2 1 10 7 6 45 1 0 9 62 55 24 1 0 22 1 0 12 1 0 18 chain 17230 chr2 243199373 + 207432454 207432818 THE1D 372 - 1 368 134979 31 1 0 146 76 83 20 20 16 12 22 23 36 chain 71471 chr2 243199373 + 207441993 207442774 L1PA3long 6157 - 5 786 47705 781 chain 341298 chr2 243199373 + 207442948 207447896 L1PB1 5432 - 11 4588 11858 17 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 21 11 4 1 0 16 1 0 8 40 42 9 2 1 50 3 1 11 90 56 46 26 6 112 0 3 274 0 6 252 2 0 24 0 1 160 1 0 19 0 1 56 5 10 110 0 1 149 0 1 81 19 29 25 0 3 839 0 3 58 2 1 161 0 1 15 0 1 41 12 11 106 16 5 284 0 3 362 324 2 13 0 1 117 8 10 80 0 1 77 0 4 53 0 1 86 14 0 227 0 5 183 0 3 135 chain 11176 chr2 243199373 + 207505718 207505857 L1PA10 4194 - 3059 3198 155539 139 chain 63722 chr2 243199373 + 207540469 207541264 L1PA8 5853 + 5007 5799 51133 77 0 2 151 0 2 321 1 0 48 2 0 71 1 0 9 1 0 52 2 1 22 1 0 36 chain 46679 chr2 243199373 + 207546425 207547075 L1P3 4156 - 17 661 61472 22 2 1 11 2 0 176 1 0 5 5 6 181 1 0 30 2 1 69 17 18 25 0 1 66 1 0 4 2 0 28 chain 4107 chr2 243199373 + 207548440 207548486 MADE1 96 - 50 96 205819 46 chain 34920 chr2 243199373 + 207565332 207565779 L1PA8 5853 - 0 441 76308 92 1 0 20 2 1 39 2 3 8 1 0 8 1 0 74 2 0 46 1 0 150 chain 8764 chr2 243199373 + 207595203 207595316 L1PA8 5853 - 0 112 166845 93 1 0 19 chain 6847 chr2 243199373 + 207599153 207599235 MER5A 189 + 0 82 178605 82 chain 27727 chr2 243199373 + 207601017 207601382 THE1B 368 - 0 368 93944 95 0 1 108 1 0 122 0 5 21 3 1 15 chain 31516 chr2 243199373 + 207606038 207606460 MLT2A1 477 + 0 458 81620 142 0 1 26 1 5 150 1 0 61 17 49 24 chain 89739 chr2 243199373 + 207606478 207607901 HERVL-int 5654 + 0 1116 39743 103 1 0 5 10 3 256 0 9 40 0 2 388 0 3 146 317 4 157 chain 20000 chr2 243199373 + 207649664 207650017 THE1B 368 - 2 368 127147 122 57 67 42 26 27 35 0 2 71 chain 38970 chr2 243199373 + 207671568 207672013 LTR7 482 - 5 482 70782 89 0 2 89 3 34 9 1 0 254 chain 298451 chr2 243199373 + 207673285 207676898 HERVH-int 3825 - 9 3825 13507 143 0 1 334 8 218 162 0 1 14 0 1 86 0 7 1072 0 1 60 8 35 239 0 1 662 1 0 49 2 1 15 21 0 15 2 1 42 1 0 4 14 14 7 3 0 13 1 0 14 28 0 24 1 0 10 1 0 38 5 0 150 0 4 155 0 11 51 0 3 158 chain 40865 chr2 243199373 + 207676900 207677351 LTR7 482 - 0 482 68074 187 0 31 264 chain 18085 chr2 243199373 + 207688318 207688519 L1PA5 6144 - 0 201 132629 201 chain 5019 chr2 243199373 + 207704655 207704729 L1PREC2 3366 - 323 395 194941 33 6 4 35 chain 9474 chr2 243199373 + 207724748 207724857 MSTC 436 + 0 109 163196 109 chain 18289 chr2 243199373 + 207742024 207742242 AluY 311 + 1 226 132104 46 0 6 79 0 1 93 chain 474502 chr2 243199373 + 207758942 207765073 L1PA7 6471 - 10 6466 7897 7 0 1 139 0 1 246 13 5 441 2 1 671 1 0 918 0 1 459 0 10 23 5 4 48 3 2 394 0 1 103 1 0 30 5 4 388 4 0 444 0 1 10 2 0 113 0 2 374 0 1 110 0 1 226 1 2 123 0 8 78 6 29 173 1 76 11 13 13 33 5 15 150 53 250 43 54 54 13 12 10 4 0 1 126 28 41 24 chain 81118 chr2 243199373 + 207769232 207770176 L1PA5 6144 - 14 954 43130 133 3 2 178 3 0 627 chain 554929 chr2 243199373 + 207772759 207778776 L1PA2 6032 + 12 6030 833 797 4 0 90 0 1 2034 0 1 2342 0 3 750 chain 288364 chr2 243199373 + 207791823 207795748 L1PA10 4194 + 175 4082 14135 12 2 0 14 3 0 5 2 0 10 44 36 10 12 10 14 1 0 8 21 15 4 1 0 22 2 0 21 1 0 7 5 4 6 5 0 7 1 0 14 4 0 13 5 0 65 14 12 243 0 9 717 1 12 71 1 0 89 0 1 195 1 0 210 1 0 598 0 1 33 16 14 185 0 1 17 7 23 57 1 0 4 3 1 166 7 6 438 4 1 67 23 24 415 chain 72154 chr2 243199373 + 207814894 207815811 L1PA6 6164 + 5233 6162 47403 81 0 1 79 12 22 50 3 6 265 0 2 15 0 1 220 2 1 23 10 6 157 chain 23512 chr2 243199373 + 207816844 207817126 AluSg7 307 - 15 297 113062 54 0 1 105 1 0 122 chain 111724 chr2 243199373 + 207817847 207819396 THE1B-int 1605 - 0 1605 33749 240 9 8 46 14 11 74 19 20 182 9 10 17 62 53 342 0 1 137 0 64 130 0 2 268 chain 46626 chr2 243199373 + 207837662 207838201 MER41A 554 - 15 554 61519 539 chain 9570 chr2 243199373 + 207845815 207845940 MER85 139 - 0 135 162736 39 1 11 85 chain 9059 chr2 243199373 + 207852744 207852862 LTR32 486 - 35 149 165260 103 4 0 11 chain 3826 chr2 243199373 + 207861618 207861660 MADE1 96 - 54 96 209986 42 chain 539975 chr2 243199373 + 207865634 207871648 L1PA3long 6157 + 4 6149 2819 148 0 1 86 0 1 442 0 3 91 0 128 156 0 2 721 0 1 44 0 1 1233 0 1 528 12 0 41 0 4 371 0 1 2141 chain 31121 chr2 243199373 + 207881941 207882351 LTR7 482 + 0 482 82301 69 8 46 87 0 1 21 0 1 8 0 31 25 0 1 192 chain 305523 chr2 243199373 + 207882353 207886382 HERVH-int 3825 + 0 3825 13186 212 0 11 311 5 0 36 1 0 10 1 0 10 4 0 5 19 13 22 78 28 44 8 28 49 0 1 4 2 0 645 9 0 29 0 2 10 1 0 309 0 1 56 6 0 236 25 30 872 167 2 40 1 0 102 4 10 20 0 1 676 chain 29984 chr2 243199373 + 207887596 207888008 LTR7 482 + 0 482 84859 68 9 47 109 8 40 21 1 0 4 6 7 186 chain 29082 chr2 243199373 + 207893899 207894205 AluYb8 318 - 12 318 88632 306 chain 72836 chr2 243199373 + 207901556 207902517 LTR5_Hs 974 + 0 974 47108 108 12 20 161 0 1 109 2 1 67 0 1 188 1 0 163 8 15 19 20 18 103 chain 2784 chr2 243199373 + 207924848 207924878 L1PA3long 6157 - 4 34 228968 30 chain 23603 chr2 243199373 + 207926451 207926737 AluSx4 309 + 11 297 112568 286 chain 5548 chr2 243199373 + 207999465 207999591 MIR 256 + 26 156 189582 21 47 50 42 0 1 16 chain 21655 chr2 243199373 + 208004606 208004899 AluSc 308 - 15 297 121554 8 23 0 11 1 13 250 chain 12604 chr2 243199373 + 208036984 208037239 MER39 703 + 391 652 149822 34 82 86 16 0 2 123 chain 10811 chr2 243199373 + 208045882 208046027 L1PA16 3655 + 3394 3540 156936 21 6 7 118 chain 32747 chr2 243199373 + 208076499 208076957 L1PA16 3655 + 3090 3545 79616 11 0 1 27 5 6 69 1 0 82 13 11 89 5 3 156 chain 4230 chr2 243199373 + 208085512 208085581 MIR 256 + 77 147 204164 19 12 13 38 chain 6798 chr2 243199373 + 208100392 208100495 MLT1A0 366 - 225 329 178969 23 13 14 67 chain 81997 chr2 243199373 + 208138259 208139138 L1PA2 6032 - 0 879 42759 879 chain 520214 chr2 243199373 + 208208890 208215300 L1PA7 6471 + 3 6468 5135 144 0 2 17 7 8 147 1 2 80 0 1 53 12 13 437 4 14 220 2 1 207 6 7 32 3 0 9 0 4 84 1 2 360 4 5 164 0 1 126 0 7 7 7 0 3 0 5 71 3 4 298 0 1 102 2 0 595 5 6 240 21 15 503 4 2 92 0 8 135 0 1 21 0 6 110 0 5 79 0 1 83 0 1 13 0 1 16 1 0 4 0 1 914 3 14 68 0 14 32 1 0 293 6 0 547 4 0 7 chain 358907 chr2 243199373 + 208241191 208245665 L1PA8 5853 - 0 5745 11380 93 1 0 15 6 5 52 16 14 66 2 0 44 13 12 37 1 0 488 11 16 4 0 1 1089 34 0 403 18 19 119 0 1307 579 4 6 201 2 5 215 0 5 92 1 2 656 18 6 194 chain 6269 chr2 243199373 + 208247056 208247133 L1MA4 2864 + 422 499 183005 77 chain 33299 chr2 243199373 + 208260757 208261124 L1PA2 6032 + 5664 6031 78731 367 chain 21368 chr2 243199373 + 208306679 208306965 AluSq2 311 + 15 296 122626 119 9 6 138 8 6 12 chain 22592 chr2 243199373 + 208318388 208320073 L1MA2 4263 + 3376 4111 117618 182 1324 384 14 11 9 89 11 4 47 1 0 6 chain 24106 chr2 243199373 + 208330343 208330643 AluSc 308 + 10 305 109709 121 2 0 141 0 2 13 2 0 5 3 0 13 chain 13048 chr2 243199373 + 208404888 208405051 Tigger3 1187 + 354 516 148042 76 1 0 86 chain 18060 chr2 243199373 + 208437338 208437551 AluYf4 310 + 80 294 132697 126 3 4 84 chain 4657 chr2 243199373 + 208451668 208451834 L1MA5 2750 + 2250 2398 198987 29 91 74 39 1 0 6 chain 17790 chr2 243199373 + 208473374 208473638 AluY 311 + 1 271 133442 46 20 25 60 0 1 8 2 1 96 6 7 26 chain 173520 chr2 243199373 + 208474549 208476760 SVA_E 1901 + 0 1896 21648 145 1 0 672 305 0 110 4 0 29 10 0 11 0 12 31 1 0 743 6 0 143 chain 6355 chr2 243199373 + 208475368 208475496 SVA_E 1901 + 817 989 121976 14 32 31 65 4 0 4 0 49 9 chain 1281 chr2 243199373 + 208475496 208475534 SVA_E 1901 + 817 855 104439 38 chain 4667 chr2 243199373 + 208475534 208475628 SVA_E 1901 + 1027 1120 121976 68 1 0 25 chain 6245 chr2 243199373 + 208518742 208518854 L1MC1 2226 + 1927 2047 183205 31 27 35 54 chain 14216 chr2 243199373 + 208533948 208534128 L1MB2 1706 - 140 325 143826 88 1 6 91 chain 7801 chr2 243199373 + 208545257 208545351 U6 107 - 1 95 172300 94 chain 6846 chr2 243199373 + 208552694 208552780 HY3 101 + 11 99 178614 21 0 2 65 chain 24204 chr2 243199373 + 208553788 208554085 AluSq10 312 + 0 294 109190 128 4 0 133 0 1 32 chain 23115 chr2 243199373 + 208556635 208556932 AluSq2 311 + 0 293 115065 48 6 0 16 0 2 66 0 2 154 2 0 5 chain 40284 chr2 243199373 + 208561474 208562006 MLT2A2 560 - 0 560 68898 69 0 1 75 5 16 200 1 9 10 3 11 169 chain 28898 chr2 243199373 + 208567224 208567529 AluYa5 310 - 6 310 89463 178 1 0 126 chain 7483 chr2 243199373 + 208637846 208637936 MER41B 635 + 521 611 174252 90 chain 3239 chr2 243199373 + 208652716 208652754 MER58A 224 - 141 179 220259 38 chain 23308 chr2 243199373 + 208659166 208659446 AluSp 311 - 31 311 114160 280 chain 25437 chr2 243199373 + 208662182 208662492 AluY 311 + 0 305 102512 132 0 1 37 6 0 135 chain 41809 chr2 243199373 + 208663147 208663762 MER41B 635 + 0 634 66882 91 5 4 33 0 1 365 12 20 32 29 37 18 0 2 8 8 9 14 chain 9961 chr2 243199373 + 208670113 208670244 MER75 514 + 381 514 160774 33 1 2 81 0 1 16 chain 8630 chr2 243199373 + 208671602 208671779 L1PB1 5432 - 5 152 167580 5 2 0 18 1 0 13 1 0 21 1 0 26 2 0 13 1 0 4 2 0 22 24 5 4 1 0 16 chain 21680 chr2 243199373 + 208716188 208716488 AluSq2 311 + 11 308 121468 45 3 1 77 14 10 7 0 3 154 chain 8907 chr2 243199373 + 208730562 208730676 L1MB8 1703 - 124 238 166098 114 chain 4118 chr2 243199373 + 208836048 208836185 L1MA5A 2387 + 2263 2380 205675 28 61 45 4 1 0 22 2 0 13 1 0 5 chain 25385 chr2 243199373 + 208838188 208838481 AluSp 311 + 8 300 102758 102 1 0 190 chain 5962 chr2 243199373 + 208843035 208843115 MADE1 96 + 0 96 185583 31 1 17 48 chain 13256 chr2 243199373 + 208847601 208847762 Tigger2a 444 + 209 373 147262 142 0 3 19 chain 25843 chr2 243199373 + 208850426 208850729 AluY 311 + 0 300 100680 11 2 0 115 1 0 174 chain 45372 chr2 243199373 + 208875672 208876441 L1PB1 5432 + 4681 5391 62631 4 0 1 118 0 2 6 10 1 272 4 6 12 3 2 9 30 6 18 1 0 8 1 0 10 2 0 3 2 0 8 2 0 53 2 1 14 4 3 39 7 6 13 3 0 5 1 0 8 9 0 18 7 4 14 6 4 24 1 0 18 chain 17088 chr2 243199373 + 208888149 208888485 MER1B 344 + 0 329 135357 18 14 13 40 0 4 7 24 23 111 4 0 38 44 31 16 0 8 20 chain 4465 chr2 243199373 + 208891816 208891888 MER50 708 + 527 590 201170 32 9 0 31 chain 28930 chr2 243199373 + 208910342 208910651 AluYa5 310 - 1 310 89327 309 chain 85950 chr2 243199373 + 208922629 208923645 L1PA5 6144 + 5097 6139 41176 335 0 18 17 0 2 309 0 13 198 7 0 150 chain 31371 chr2 243199373 + 208923663 208924045 L1PA6 6164 + 5782 6161 81871 370 3 0 9 chain 24306 chr2 243199373 + 208940545 208940814 AluY 311 + 23 296 108626 109 0 1 28 0 3 132 chain 280558 chr2 243199373 + 208945553 208950055 L1PB1 5432 + 1344 5423 14614 43 2 0 17 3 7 258 0 5 24 0 1 12 0 2 50 75 11 126 50 19 152 0 3 376 340 16 31 7 0 89 0 10 245 4 3 181 0 1 39 1 0 165 10 14 141 6 44 208 0 1 86 14 8 93 0 1 11 10 12 81 0 3 8 3 0 28 0 1 22 1 0 60 19 26 60 3 9 17 0 4 75 0 9 73 4 5 125 1 7 9 0 4 151 3 0 169 4 3 300 6 7 10 61 0 19 1 0 10 1 0 12 6 2 10 2 0 49 21 19 45 1 0 15 28 16 10 7 5 5 1 0 14 2 0 24 1 0 23 15 13 12 1 0 5 chain 30183 chr2 243199373 + 208959135 208959453 AluYb8 318 - 0 318 84245 318 chain 16380 chr2 243199373 + 208963029 208963285 MER52C 1267 - 8 275 137257 43 1 0 75 19 18 25 3 0 20 1 17 69 chain 31602 chr2 243199373 + 208964759 208965209 MER65A 464 - 0 461 81483 17 0 6 6 2 0 116 1 0 195 1 0 66 27 36 19 chain 7802 chr2 243199373 + 208968987 208969073 AluSq2 311 - 9 95 172298 86 chain 7386 chr2 243199373 + 208975662 208975743 L1PA4 6152 - 71 152 174864 81 chain 163668 chr2 243199373 + 208979611 208981527 Harlequin-int 5206 + 1003 2931 22852 128 0 4 134 0 1 137 13 0 121 1 0 632 0 22 42 0 1 272 1 0 260 1 0 174 chain 29354 chr2 243199373 + 208981527 208982052 HERVE_a-int 7009 + 6443 6942 86563 22 1 0 10 1 0 16 1 0 4 3 1 7 1 0 34 6 5 18 1 0 48 1 0 4 1 0 27 7 5 8 0 1 45 1 0 37 3 0 50 7 5 27 8 7 23 1 0 6 17 14 24 2 0 34 4 2 15 chain 38341 chr2 243199373 + 208982134 208982594 LTR2 463 + 0 463 71663 127 0 3 333 chain 5376 chr2 243199373 + 209002808 209002917 Tigger3 1187 - 61 252 191242 38 7 5 12 1 95 13 10 0 28 chain 42646 chr2 243199373 + 209002918 209003427 MER9a2 513 - 3 513 65845 137 0 1 372 chain 23611 chr2 243199373 + 209003475 209003764 AluY 311 + 11 299 112516 42 2 1 245 chain 29497 chr2 243199373 + 209004173 209004565 MER48 407 + 5 407 86647 131 1 21 144 19 9 97 chain 12276 chr2 243199373 + 209008604 209009096 MER4A1_ 611 + 436 610 151093 54 1 0 20 0 1 41 319 0 45 0 2 6 1 0 5 chain 23751 chr2 243199373 + 209016134 209016426 L1PA16 3655 + 1485 1777 111772 292 chain 21471 chr2 243199373 + 209027299 209027580 AluSp 311 + 0 293 122249 52 0 18 203 10 4 16 chain 30551 chr2 243199373 + 209055249 209055703 LTR7B 505 - 8 505 83339 43 18 17 50 0 1 24 1 0 82 0 2 26 3 27 14 19 27 67 1 11 106 chain 29703 chr2 243199373 + 209061168 209061477 AluYa5 310 - 1 310 85820 309 chain 53529 chr2 243199373 + 209064278 209064893 LTR5_Hs 974 + 0 613 56661 288 0 1 128 3 0 196 chain 30143 chr2 243199373 + 209080648 209081063 LTR7 482 - 0 482 84339 109 5 0 65 0 1 17 0 1 25 8 40 109 8 46 69 chain 300021 chr2 243199373 + 209082275 209086252 HERVH-int 3825 - 0 3825 13424 196 1 2 178 4 1 9 4 7 416 1 0 43 164 0 805 1 0 69 8 13 306 0 1 309 1 0 13 0 2 24 9 0 202 15 0 7 1 0 443 1 0 82 2 1 12 2 0 28 1 0 4 2 40 10 5 0 12 4 0 10 2 1 8 2 1 24 0 1 4 1 0 6 1 0 223 1 0 89 0 11 212 chain 28618 chr2 243199373 + 209086266 209086659 LTR7 482 - 12 477 90660 164 0 1 10 5 6 25 8 40 109 8 46 64 chain 10241 chr2 243199373 + 209086756 209086886 MER50 708 - 575 705 159413 29 0 1 49 1 0 51 chain 3466 chr2 243199373 + 209092118 209092158 LTR12C 1709 - 832 872 215886 40 chain 24275 chr2 243199373 + 209111382 209111684 AluSg 306 + 0 298 108806 16 0 2 29 7 1 250 chain 13272 chr2 243199373 + 209144527 209144696 L1PA16 3655 + 2191 2360 147205 169 chain 4317 chr2 243199373 + 209160453 209160525 L1MC4 1079 - 496 567 203000 50 7 6 15 chain 67134 chr2 243199373 + 209180601 209181346 L1PA3long 6157 - 0 744 49595 459 2 1 284 chain 72937 chr2 243199373 + 209181346 209182154 L1PA3long 6157 + 4635 5447 47051 675 0 4 133 chain 7460 chr2 243199373 + 209182154 209182259 MER30 238 + 127 238 174397 23 4 10 78 chain 32811 chr2 243199373 + 209187425 209187804 L1PA5 6144 - 3 383 79515 151 0 1 228 chain 85461 chr2 243199373 + 209187827 209188801 L1PA3long 6157 - 0 966 41357 12 9 0 576 0 1 377 chain 5772 chr2 243199373 + 209223919 209223990 MER51A 677 - 316 388 187425 4 0 1 67 chain 135465 chr2 243199373 + 209241607 209243131 SVA_C 1631 - 11 1615 26929 458 1 0 212 1 0 40 1 0 21 5 87 781 0 1 4 chain 24171 chr2 243199373 + 209252753 209253066 AluY 311 + 1 302 109370 104 7 0 27 0 1 30 2 1 129 5 0 9 chain 140133 chr2 243199373 + 209260438 209262037 L1PA6 6164 + 4556 6162 26122 762 0 4 17 0 2 577 0 1 243 chain 30885 chr2 243199373 + 209281307 209281744 MLT2A1 477 + 0 477 82711 150 0 5 14 4 1 12 0 1 21 0 1 128 3 4 20 2 3 25 4 0 10 7 45 37 chain 44375 chr2 243199373 + 209284528 209285019 L1PA4 6152 + 5659 6152 63722 485 0 2 6 chain 7095 chr2 243199373 + 209307774 209307864 MER2 342 + 111 213 176795 7 0 12 83 chain 73795 chr2 243199373 + 209346943 209347804 MER11D 897 - 0 887 46618 119 0 1 73 1 2 92 1 24 248 4 5 323 chain 34909 chr2 243199373 + 209356125 209356701 LTR19B 566 - 2 566 76334 27 14 15 22 8 10 37 6 5 102 15 15 27 10 0 9 7 0 88 4 5 31 7 10 31 2 0 81 0 1 48 chain 27358 chr2 243199373 + 209361900 209362208 L1PA5 6144 + 5836 6144 95083 308 chain 523246 chr2 243199373 + 209383976 209390709 L1PA7 6471 - 5 6471 4845 143 15 15 161 309 0 17 1 0 420 1 0 81 0 5 150 0 1 136 6 6 382 1 0 392 0 1 1032 0 1 37 8 6 380 10 14 454 10 1 135 0 22 500 1 2 403 6 7 94 0 3 41 3 14 336 0 1 56 1 0 4 0 1 600 1 0 50 1 0 17 0 7 338 chain 13851 chr2 243199373 + 209402594 209402766 L1PA16 3655 + 3406 3578 145063 172 chain 6705 chr2 243199373 + 209421333 209421425 L1PA16 3655 - 115 209 179650 53 4 6 35 chain 42295 chr2 243199373 + 209425865 209426421 MLT2A2 560 - 0 558 66275 149 0 11 133 0 1 20 12 3 63 1 0 178 chain 29986 chr2 243199373 + 209451726 209452044 AluYb9 318 - 1 318 84854 118 1 0 199 chain 158156 chr2 243199373 + 209475431 209477885 L1PB1 5432 - 2 2408 23570 4 1 0 4 1 0 4 1 0 14 1 0 34 1 0 23 56 43 4 1 0 4 1 0 12 6 5 35 8 7 15 1 0 14 1 0 38 3 1 10 5 1 14 1 0 6 1 0 24 3 0 7 3 4 14 1 6 267 20 4 6 0 2 8 1 0 166 7 1 201 37 37 261 0 1 149 19 26 225 4 0 6 0 2 34 6 7 208 0 1 49 15 16 38 4 7 40 9 10 74 0 1 133 3 0 41 11 1 4 0 1 32 chain 38750 chr2 243199373 + 209480346 209480836 HERV1_LTRd 520 - 10 513 71080 42 1 0 36 0 1 69 2 4 20 1 0 273 0 12 46 chain 13326 chr2 243199373 + 209503922 209504230 MSTD 398 - 13 323 146984 135 58 98 17 39 0 9 15 16 35 chain 66857 chr2 243199373 + 209524405 209525187 L1PA7 6471 - 3 790 49705 609 0 3 156 0 2 17 chain 162577 chr2 243199373 + 209526674 209528475 L1PA3long 6157 + 4354 6157 22988 922 0 2 879 chain 526424 chr2 243199373 + 209545090 209551230 L1PA5 6144 - 12 6144 4555 135 0 1 110 0 1 717 0 3 537 1 0 50 2 3 365 3 0 276 3 4 426 19 10 220 10 11 97 3 2 1055 0 4 266 0 1 28 0 2 500 0 1 81 0 2 110 23 9 182 0 1 675 0 1 246 chain 191545 chr2 243199373 + 209552370 209555179 L1PA11 4918 - 290 3313 19907 17 45 31 13 2 0 13 1 0 15 13 9 10 21 11 6 0 1 14 1 0 14 2 0 62 21 19 56 8 6 59 1 9 242 0 5 85 0 1 5 1 0 265 3 1 58 0 241 170 5 19 178 0 1 81 1 0 48 27 6 10 1 0 223 5 4 72 13 1 22 2 0 218 0 4 8 1 6 16 9 13 12 2 0 6 16 18 10 2 0 174 0 10 215 3 0 40 0 4 166 chain 51370 chr2 243199373 + 209558379 209558989 L1PA7 6471 - 1 615 58050 12 0 2 234 1 0 358 0 3 5 chain 53379 chr2 243199373 + 209560903 209561491 L1PA4 6152 - 1 589 56781 588 chain 36926 chr2 243199373 + 209566092 209566638 MLT2A2 560 - 0 560 73624 69 0 1 77 3 14 58 9 10 96 51 52 183 chain 14628 chr2 243199373 + 209566645 209566939 L1PREC2 3366 - 415 685 142497 29 6 4 12 52 39 13 3 0 5 1 0 43 1 0 54 2 0 26 4 2 5 0 2 31 2 0 5 chain 29255 chr2 243199373 + 209585000 209585377 THE1C 375 - 0 375 87763 25 1 0 163 1 3 59 3 0 125 chain 32839 chr2 243199373 + 209588753 209589110 L1PA4 6152 - 1 358 79477 357 chain 549027 chr2 243199373 + 209611216 209617363 L1PA3long 6157 - 0 6153 1573 154 0 2 1204 3 1 2009 0 2 861 0 5 443 0 1 1150 15 13 308 chain 224789 chr2 243199373 + 209622825 209625702 L1PA5 6144 - 0 2575 17607 784 307 0 65 0 3 17 0 4 357 0 1 703 3 0 641 chain 457981 chr2 243199373 + 209625702 209631007 L1PA5 6144 + 839 6136 8471 529 5 1 259 6 1 1124 0 3 17 0 4 346 0 2 23 4 0 137 1 0 359 0 11 555 3 0 198 20 8 482 4 0 399 0 4 700 0 1 134 chain 26163 chr2 243199373 + 209633196 209633557 THE1B 368 + 3 368 99355 166 1 0 18 0 1 13 18 23 82 1 0 4 1 2 16 1 0 40 chain 253232 chr2 243199373 + 209638181 209641018 L1PA3long 6157 + 3305 6157 16066 434 14 1 80 0 1 533 0 4 135 0 1 142 0 21 401 0 1 1098 chain 43148 chr2 243199373 + 209642197 209642702 L1PA7 6471 - 4 509 65230 505 chain 20833 chr2 243199373 + 209642702 209642949 L1PA7 6471 + 5692 5939 124502 247 chain 535301 chr2 243199373 + 209648980 209655148 L1PA4 6152 + 1 6151 3550 525 4 0 8 3 7 35 1 0 40 4 0 217 17 0 2215 1 0 391 0 1 137 4 0 1721 0 4 385 0 1 209 0 1 94 4 6 153 chain 4285 chr2 243199373 + 209660797 209660847 MLT1D 503 + 125 176 203413 23 0 1 27 chain 549358 chr2 243199373 + 209665369 209671515 L1PA3long 6157 + 4 6155 1532 314 1 0 424 1 0 2105 0 1 793 0 2 1663 4 8 841 chain 551117 chr2 243199373 + 209676345 209682372 L1PA2 6032 + 0 6032 1296 1831 0 3 127 0 1 166 1 2 3902 chain 35917 chr2 243199373 + 209694252 209694857 MER39B 650 + 0 619 74992 45 21 36 71 5 3 167 1 2 57 73 74 135 9 8 21 chain 537478 chr2 243199373 + 209696291 209702457 L1PA4 6152 + 0 6151 3239 576 1 0 254 20 3 410 0 1 472 1 0 132 0 1 455 0 1 945 0 1 188 0 1 361 0 1 1081 1 0 138 0 9 269 1 2 515 0 3 186 14 0 146 chain 22066 chr2 243199373 + 209714367 209714641 AluY 311 + 31 303 119936 92 2 0 180 chain 28720 chr2 243199373 + 209728268 209728587 L1PA4 6152 + 5340 5658 90243 39 1 0 279 chain 18160 chr2 243199373 + 209728591 209728798 L1PA4 6152 + 5658 5866 132438 160 0 1 47 chain 11060 chr2 243199373 + 209728799 209728924 L1PA4 6152 + 6018 6143 155961 125 chain 94354 chr2 243199373 + 209729380 209730446 L1PA4 6152 + 5089 6152 38247 1057 3 0 6 chain 9263 chr2 243199373 + 209736062 209736188 L1PA8 5853 + 5711 5853 164243 25 0 17 7 1 0 93 chain 35481 chr2 243199373 + 209748539 209749036 L1PA13 3608 + 2984 3475 75583 143 2 1 35 0 1 109 2 0 62 1 0 61 2 0 46 6 6 20 1 0 7 chain 124012 chr2 243199373 + 209750592 209752180 THE1B-int 1605 + 0 1605 29700 426 0 25 210 13 2 192 4 5 168 0 1 4 1 0 554 0 1 7 0 1 9 chain 10613 chr2 243199373 + 209758893 209759254 HERVH-int 3825 + 0 361 15318 34 0 1 298 2 1 27 chain 501712 chr2 243199373 + 209759262 209764803 L1PA2 6032 + 1 6032 6743 70 1 2 65 0 480 415 0 3 257 5 9 972 0 1 2974 2 1 605 0 2 175 chain 92725 chr2 243199373 + 209764838 209767992 HERVH-int 3825 + 361 3825 15318 112 14 15 45 1 0 8 7 95 19 2 1 42 2 1 80 16 15 74 0 1 137 34 22 308 6 5 232 0 5 15 0 1 105 11 13 288 0 4 119 10 14 600 0 10 373 37 247 197 1 2 259 chain 20733 chr2 243199373 + 209769796 209770191 LTR7 482 + 0 482 124840 68 9 47 79 87 130 54 0 4 37 12 14 49 chain 33738 chr2 243199373 + 209772631 209773087 LTR7 482 + 0 476 78031 100 21 15 42 6 1 72 0 31 215 chain 13409 chr2 243199373 + 209777814 209778137 L1PB1 5432 + 5130 5422 146677 4 1 0 10 1 0 10 20 14 43 11 10 15 1 0 39 10 9 11 2 0 7 16 6 18 3 1 5 1 0 14 3 1 23 1 0 21 1 0 13 1 0 18 chain 11508 chr2 243199373 + 209788363 209788506 L1PA16 3655 - 3322 3465 154261 143 chain 4400 chr2 243199373 + 209791199 209791302 L1MB1 2102 + 1896 1998 201926 20 0 1 14 37 35 32 chain 8974 chr2 243199373 + 209840730 209840835 L1PA8 5853 - 0 104 165749 93 1 0 11 chain 48143 chr2 243199373 + 209859476 209860042 L1PA7 6471 - 7 573 60368 566 chain 109852 chr2 243199373 + 209860042 209861333 L1PA7 6471 + 4607 5896 34245 342 1 0 658 8 7 282 chain 19704 chr2 243199373 + 209867494 209867812 LTR27 711 + 8 326 128080 98 49 50 34 5 4 109 0 1 18 1 0 4 chain 64490 chr2 243199373 + 209882921 209883964 MER11B 1079 + 0 1064 50805 319 0 1 137 18 17 22 24 12 15 0 1 12 8 8 32 14 14 4 0 1 67 127 165 52 0 1 37 0 1 41 0 1 73 0 1 21 11 0 9 chain 404946 chr2 243199373 + 209885909 209891018 L1PA7 6471 + 1335 6467 9950 470 0 1 358 0 1 99 1 0 84 0 1 280 23 11 674 4 14 201 0 1 5 1 0 395 11 12 60 0 1 142 0 1 185 0 1 59 21 12 265 0 4 282 0 1 53 8 9 142 4 1 432 0 8 23 3 7 154 48 60 287 0 1 335 chain 21233 chr2 243199373 + 209895761 209896013 THE1C-int 1605 - 18 270 123089 252 chain 22615 chr2 243199373 + 209923767 209924009 L1PA2 6032 - 189 431 117507 242 chain 6782 chr2 243199373 + 209924009 209924084 L1PA2 6032 + 5957 6032 179087 75 chain 38880 chr2 243199373 + 209942743 209943193 LTR7 482 + 0 482 70897 225 0 1 40 0 31 185 chain 290490 chr2 243199373 + 209943195 209946835 HERVH-int 3825 + 0 3825 13990 157 2 1 175 1 0 202 6 4 6 0 1 23 27 0 8 1 0 4 0 16 6 3 1 15 1 0 12 33 7 19 24 0 34 8 29 9 1 0 50 0 1 4 2 0 646 9 0 45 1 0 210 4 31 370 10 15 347 1 0 644 0 3 25 8 218 487 chain 39395 chr2 243199373 + 209948652 209949100 LTR7 482 + 0 482 70172 266 0 31 156 0 3 26 chain 10470 chr2 243199373 + 209956344 209956546 L1PB1 5432 - 13 194 158388 4 1 0 11 1 0 12 1 0 22 8 7 17 2 0 14 9 6 18 8 0 12 3 0 16 1 0 42 chain 3522 chr2 243199373 + 209956565 209956605 L1PB1 5432 + 5039 5079 215027 40 chain 36181 chr2 243199373 + 209956802 209957272 L1PBa 3878 - 1419 1891 74657 99 0 1 299 14 10 20 0 5 38 chain 4711 chr2 243199373 + 209962126 209962181 LTR1B 797 + 735 790 198383 55 chain 38150 chr2 243199373 + 209963946 209964485 MLT2A2 560 - 1 560 71909 53 0 1 6 1 0 79 1 23 179 27 26 12 13 12 168 chain 105690 chr2 243199373 + 209968519 209970045 L1PB1 5432 + 3893 5399 35332 128 1 0 281 1 7 320 0 2 74 0 2 97 0 2 6 22 26 185 5 0 75 16 16 17 4 3 10 1 0 12 9 5 7 2 0 47 23 21 45 1 0 15 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 7 chain 3208 chr2 243199373 + 209985584 209985625 MSTD 398 - 66 106 220761 5 1 0 35 chain 2192 chr2 243199373 + 209985780 209985803 L1PB1 5432 + 5347 5370 236628 23 chain 3389 chr2 243199373 + 209985804 209985854 L1PB1 5432 + 5370 5417 217298 21 1 0 13 1 0 9 1 0 4 chain 552991 chr2 243199373 + 209993253 209999278 L1PA2 6032 + 0 6028 1067 940 0 2 1019 0 1 4066 chain 174871 chr2 243199373 + 210000944 210002925 L1PA5 6144 - 0 1988 21480 845 0 5 416 0 1 71 1 2 648 chain 38716 chr2 243199373 + 210020496 210021054 MER41A 554 + 0 546 71127 126 0 4 50 10 13 163 27 4 10 8 0 35 0 4 70 1 2 21 0 7 37 chain 50984 chr2 243199373 + 210021754 210022398 PABL_A 660 + 0 660 58322 20 1 5 37 0 5 307 1 0 212 0 8 57 1 0 4 0 1 4 chain 4026 chr2 243199373 + 210026588 210026632 L1PA4 6152 - 16 60 206977 44 chain 506422 chr2 243199373 + 210028147 210033769 L1PA3long 6157 + 0 6152 6440 152 0 1 61 0 407 155 0 128 162 0 2 1021 0 1 2746 17 7 489 0 1 819 chain 25536 chr2 243199373 + 210037751 210038064 AluSp 311 - 0 308 102074 119 5 0 189 chain 21047 chr2 243199373 + 210051757 210052044 L1PA7 6471 + 6184 6465 123743 38 8 7 67 15 13 149 3 0 7 chain 87284 chr2 243199373 + 210067221 210068286 MER11B 1079 - 14 1079 40656 283 8 0 9 1 3 175 1 0 294 0 5 37 10 7 22 0 5 225 chain 70433 chr2 243199373 + 210071299 210072226 L1PA8 5853 + 4916 5853 48196 38 0 1 51 6 11 477 12 21 49 1 0 47 2 0 71 8 6 10 2 3 59 2 1 92 chain 179812 chr2 243199373 + 210094099 210096502 L1PA10 4194 - 33 2467 21010 11 1 0 7 0 1 26 15 12 159 0 1 211 0 7 78 0 2 355 4 8 152 4 0 107 12 10 70 0 1 106 2 1 161 2 1 11 0 7 7 6 7 18 0 1 51 0 4 217 0 1 108 5 7 287 0 1 51 5 13 61 0 2 93 chain 106739 chr2 243199373 + 210096826 210098027 L1PA4 6152 + 4945 6152 35050 1191 0 6 10 chain 446219 chr2 243199373 + 210106684 210112207 L1PA7 6471 + 832 6462 8869 426 0 1 252 0 1 260 1 2 426 0 3 5 1 10 342 0 3 78 6 0 64 0 3 156 7 9 315 30 1 22 10 9 125 0 7 8 8 0 400 0 1 14 0 1 58 24 0 16 0 5 39 0 121 258 8 0 186 5 6 203 1 9 88 0 15 281 2 0 560 1 0 91 0 3 446 0 1 300 chain 30336 chr2 243199373 + 210112399 210112716 AluYb8 318 + 0 317 83817 317 chain 20948 chr2 243199373 + 210122888 210123132 L1PA7 6471 + 6221 6465 124117 244 chain 516818 chr2 243199373 + 210126158 210132241 L1PA5 6144 + 5 6130 5507 46 0 4 65 4 18 18 0 12 673 20 24 26 0 10 248 0 3 17 9 0 187 0 1 582 1 0 375 0 1 519 1 2 674 1 0 769 0 2 523 1 2 1324 chain 25606 chr2 243199373 + 210132674 210132961 L1PA3long 6157 - 0 286 101700 259 1 0 27 chain 91097 chr2 243199373 + 210134461 210135750 L1PB1 5432 - 12 1276 39264 16 1 0 13 1 0 21 1 0 24 2 0 12 13 10 27 11 0 17 1 0 43 7 6 10 2 1 50 3 1 11 4 0 12 1 0 7 2 1 24 1 0 5 7 6 50 11 11 208 22 30 97 0 2 84 3 0 465 chain 22176 chr2 243199373 + 210139663 210139928 AluSc5 308 - 10 278 119466 19 0 2 19 1 0 117 1 3 108 chain 21058 chr2 243199373 + 210145549 210145785 AluYf4 310 - 2 237 123699 176 1 0 59 chain 128847 chr2 243199373 + 210147946 210149453 L1PA5 6144 - 3138 4651 28348 443 8 12 237 2 1 116 0 1 233 0 2 468 chain 40174 chr2 243199373 + 210149453 210149941 L1PA5 6144 + 3015 3500 68935 161 1 0 26 3 1 297 chain 234394 chr2 243199373 + 210149941 210152572 L1PA5 6144 + 3501 6144 17069 824 0 1 23 0 4 944 0 5 786 3 5 51 chain 17666 chr2 243199373 + 210155474 210155757 MER1B 344 - 6 292 133783 22 4 0 27 34 39 165 3 5 28 chain 54104 chr2 243199373 + 210159735 210160609 L1PB1 5432 + 4579 5422 56292 42 0 1 182 0 7 77 14 15 200 1 2 10 17 1 21 1 0 9 1 0 10 2 0 3 2 0 9 3 1 51 2 1 15 1 0 45 1 0 5 0 2 8 3 0 6 16 6 16 10 7 15 2 0 44 12 14 18 chain 41266 chr2 243199373 + 210164036 210164514 LTR7 482 + 0 482 67575 382 0 2 35 12 14 49 chain 283140 chr2 243199373 + 210164516 210167963 HERVH-int 3825 + 0 3825 14458 484 0 56 30 1 0 10 1 0 24 6 56 37 1 0 16 6 7 6 1 0 29 0 1 7 0 2 13 0 3 505 0 1 5 1 0 389 8 35 60 0 1 238 0 10 378 0 1 4 1 0 47 1 0 100 0 3 181 1 11 185 7 8 75 0 3 49 9 11 39 8 218 226 1 2 32 0 2 225 chain 38079 chr2 243199373 + 210169210 210169656 LTR7 482 + 0 482 72014 230 0 31 121 0 2 28 0 1 6 12 14 49 chain 62866 chr2 243199373 + 210170934 210171694 LTR17 781 + 0 781 51501 119 1 10 170 10 0 28 0 1 61 1 0 276 1 0 51 0 22 35 0 1 7 chain 30585 chr2 243199373 + 210186005 210186427 MLT2A1 477 - 0 471 83232 23 28 76 208 4 1 27 0 4 132 chain 31142 chr2 243199373 + 210188320 210188794 MER51E 476 - 0 476 82269 49 1 11 12 2 0 5 30 15 82 15 19 123 5 9 109 0 1 41 chain 85734 chr2 243199373 + 210196842 210197771 L1PA3long 6157 - 4 933 41252 929 chain 56088 chr2 243199373 + 210197771 210198378 L1PA3long 6157 + 4625 5233 54826 551 0 1 56 chain 65648 chr2 243199373 + 210217314 210218037 L1PA3long 6157 + 5377 6101 50274 471 0 1 252 chain 22350 chr2 243199373 + 210218089 210218340 L1PA4 6152 - 263 517 118704 196 0 2 40 0 1 15 chain 22798 chr2 243199373 + 210218340 210218594 L1PA4 6152 + 5892 6146 116582 254 chain 44199 chr2 243199373 + 210220751 210221303 MER41A 554 + 0 554 63947 193 0 2 359 chain 22463 chr2 243199373 + 210230559 210230832 AluSp 311 - 27 311 118178 218 0 11 55 chain 287107 chr2 243199373 + 210236443 210239882 L1PA7 6471 + 3016 6470 14214 481 1 0 33 0 2 18 0 4 433 1 2 15 8 6 7 0 1 239 0 1 517 0 3 26 0 2 815 1 0 267 0 1 221 0 1 28 0 1 127 2 1 187 1 4 11 chain 92441 chr2 243199373 + 210251920 210253226 LTR12C 1709 + 0 1709 38831 277 4 0 12 2 7 34 11 55 70 7 10 9 3 0 217 0 41 78 0 81 29 0 37 29 3 132 27 0 1 78 35 4 81 1 0 87 0 102 123 5 4 84 chain 21186 chr2 243199373 + 210254973 210255229 AluY 311 + 47 304 123255 85 0 1 171 chain 23527 chr2 243199373 + 210271038 210271332 AluSp 311 + 10 294 112972 110 8 0 163 2 0 11 chain 26947 chr2 243199373 + 210284125 210284410 AluYb8 318 + 23 308 96463 285 chain 25540 chr2 243199373 + 210293691 210293975 AluYk4 311 - 26 310 102055 284 chain 516849 chr2 243199373 + 210352735 210359164 L1PA7 6471 + 19 6468 5504 61 0 6 326 1 0 62 1 0 854 0 1 19 9 8 575 0 1 51 0 12 97 0 2 192 0 1 71 0 1 72 5 4 84 1 0 113 21 0 250 0 1 213 0 4 403 1 0 23 1 0 48 0 5 97 1 0 387 0 1 34 0 1 88 0 4 373 5 6 101 3 1 6 0 2 71 0 1 203 1 0 32 10 20 453 8 1 159 0 4 643 0 2 43 2 0 8 6 7 141 chain 45267 chr2 243199373 + 210359777 210360353 L1P3 4156 + 663 1241 62749 12 4 5 30 12 13 518 chain 16548 chr2 243199373 + 210413329 210413691 THE1D 372 + 7 355 136803 8 0 2 12 1 0 19 9 0 9 95 88 39 7 9 20 1 0 5 0 1 6 1 0 130 chain 14991 chr2 243199373 + 210448661 210448866 L1PA16 3655 - 70 274 141353 7 3 0 118 1 2 47 0 1 29 chain 59165 chr2 243199373 + 210460128 210460836 L1PA6 6164 + 5451 6159 53299 296 1 4 403 3 0 5 chain 82972 chr2 243199373 + 210463172 210464085 L1PA3long 6157 - 0 912 42348 5 2 0 149 0 1 757 chain 22294 chr2 243199373 + 210578640 210578927 AluSq2 311 + 10 286 118939 41 3 0 83 9 1 151 chain 12685 chr2 243199373 + 210581149 210581368 MER30 238 + 0 235 149504 23 26 25 35 0 1 6 1 0 16 4 24 63 3 0 42 chain 12330 chr2 243199373 + 210608612 210608758 L1PA5 6144 + 5982 6137 150894 33 0 9 113 chain 555198 chr2 243199373 + 210610912 210616932 L1PA2 6032 - 9 6032 805 4 0 1 169 2 0 596 0 3 45 0 1 2040 1 0 84 0 1 3079 chain 3577 chr2 243199373 + 210617132 210617173 MER58B 340 - 168 209 214025 41 chain 32700 chr2 243199373 + 210630557 210630931 L1PA4 6152 + 5765 6143 79687 276 0 4 98 chain 129140 chr2 243199373 + 210659644 210661226 THE1A-int 1579 + 0 1579 28281 44 0 1 4 1 0 95 2 0 56 2 3 340 4 0 633 1 2 249 5 6 146 chain 24458 chr2 243199373 + 210661226 210661587 THE1A 353 + 0 353 107764 25 1 2 56 0 1 4 10 9 13 1 0 25 7 0 63 1 0 155 chain 296024 chr2 243199373 + 210661958 210666101 L1PA8A 6298 - 16 3788 13646 131 0 1 288 1 16 56 1 0 291 11 10 627 451 37 149 0 2 195 0 2 57 0 2 7 20 18 184 0 1 53 1 2 268 1 6 57 0 1 82 0 7 283 0 3 40 9 8 370 0 4 396 0 4 114 chain 9794 chr2 243199373 + 210685751 210686088 MLT1A 405 - 0 342 161628 101 194 198 22 1 2 19 chain 26544 chr2 243199373 + 210702497 210702794 AluYk4 311 - 14 311 97868 297 chain 464373 chr2 243199373 + 210723812 210729921 L1PA8A 6298 - 8 6264 8243 281 0 3 174 0 2 260 0 2 10 5 6 55 0 4 218 15 10 335 19 1 587 0 1 238 0 1 203 15 29 190 7 8 302 1 0 264 12 225 167 10 11 193 10 0 185 1 0 310 0 1 392 7 6 288 16 17 46 0 3 125 1 0 10 6 0 177 0 3 37 1 0 173 20 8 22 8 5 24 0 1 166 5 4 72 6 4 9 1 0 15 2 0 97 1 0 44 127 109 9 1 0 19 6 5 7 8 0 13 4 1 16 42 35 12 1 0 6 chain 31400 chr2 243199373 + 210754220 210754599 L1PA7 6471 - 2 384 81814 10 0 1 192 0 1 46 0 1 131 chain 22670 chr2 243199373 + 210779885 210780154 AluY 311 + 39 308 117211 69 1 2 23 1 0 175 chain 37259 chr2 243199373 + 210790045 210790548 LTR12 884 - 15 884 73159 49 0 236 150 30 0 33 0 27 33 0 133 208 chain 12990 chr2 243199373 + 210806837 210807030 MER1B 344 + 139 339 148283 68 0 5 55 20 22 50 chain 6507 chr2 243199373 + 210821306 210821382 L1PA2 6032 - 5 79 181183 8 2 0 66 chain 102867 chr2 243199373 + 210864363 210865847 LTR12C 1709 - 0 1709 36034 84 13 12 73 1 0 167 0 1 99 0 3 42 11 4 75 9 63 249 1 0 35 0 119 178 19 21 65 7 5 26 7 50 49 3 0 7 6 10 11 4 5 37 15 17 74 4 6 92 0 9 21 chain 8801 chr2 243199373 + 210883425 210883549 MER85 139 - 4 139 166640 17 1 0 9 1 13 96 chain 24893 chr2 243199373 + 210918758 210919064 AluY 311 + 0 301 105389 118 6 0 8 0 1 174 chain 22073 chr2 243199373 + 210919723 210920078 THE1C 375 + 0 375 119910 125 22 34 27 0 1 6 8 11 96 0 4 31 14 17 5 3 0 18 chain 92373 chr2 243199373 + 210922352 210923745 MER11C 1089 + 0 1073 38850 434 2 1 132 2 1 313 1 0 27 317 0 165 chain 16016 chr2 243199373 + 210926787 210927121 THE1B 368 + 0 368 138315 44 0 15 22 0 4 5 2 0 82 72 81 31 27 35 49 chain 4269 chr2 243199373 + 210936299 210936363 MLT1C 463 - 291 356 203635 46 7 8 11 chain 24857 chr2 243199373 + 210966712 210967000 L1PA5 6144 - 1197 1495 105587 193 0 10 95 chain 107203 chr2 243199373 + 210967000 210968206 L1PA5 6144 + 4943 6142 34914 992 3 0 200 4 0 7 chain 43047 chr2 243199373 + 210976459 210976944 L1PA4 6152 - 1 486 65356 485 chain 3148 chr2 243199373 + 211023511 211023545 Tigger14a 266 + 114 148 221989 34 chain 518207 chr2 243199373 + 211045807 211052188 L1PA7 6471 + 67 6461 5359 209 1 2 4 1 0 118 4 3 188 0 1 209 4 6 70 0 2 330 1 5 341 1 0 1019 0 1 145 0 10 156 0 4 26 0 1 271 2 0 414 5 4 387 55 22 472 0 1 26 9 13 46 3 1 100 0 4 550 0 4 109 1 0 98 0 1 182 9 11 256 0 12 235 0 1 170 0 1 40 1 0 113 chain 6647 chr2 243199373 + 211088160 211088242 MER5A1 166 + 70 152 180124 82 chain 8683 chr2 243199373 + 211091040 211091184 LTR14B 630 + 4 359 167290 52 0 179 37 23 55 32 chain 23379 chr2 243199373 + 211098758 211099127 THE1D 372 - 0 370 113765 148 40 41 5 3 0 6 0 4 66 7 6 94 chain 73832 chr2 243199373 + 211121535 211122359 L1PA4 6152 - 968 1798 46603 109 0 1 431 0 5 284 chain 82254 chr2 243199373 + 211122376 211123296 L1PA4 6152 + 5228 6152 42655 76 0 4 844 chain 15826 chr2 243199373 + 211136810 211137117 THE1D 372 - 15 327 138869 17 1 0 115 1 0 4 13 15 12 28 35 35 29 27 52 chain 168051 chr2 243199373 + 211138966 211141061 L1PA8 5853 - 6 2131 22279 86 2 1 19 2 1 47 1 0 11 1 0 74 2 0 44 1 0 18 0 1 55 0 1 390 0 3 4 1 0 83 0 2 14 5 9 170 0 1 4 2 3 71 0 1 128 0 4 300 1 2 5 0 19 60 3 1 305 0 2 186 chain 29064 chr2 243199373 + 211194964 211195440 L1PA17 2846 - 1289 1776 88701 84 1 0 4 0 1 5 28 22 32 2 0 6 0 2 134 0 1 107 42 56 10 1 3 20 chain 43685 chr2 243199373 + 211197402 211197978 L1PA7 6471 - 2271 2851 64586 195 2 0 6 1 5 158 2 0 23 1 5 17 0 3 86 7 5 71 1 0 6 chain 17220 chr2 243199373 + 211197978 211198192 L1PA7 6471 + 4221 4436 132789 21 4 5 189 chain 38972 chr2 243199373 + 211198192 211198694 L1PA7 6471 + 4439 4953 70778 237 1 5 11 6 14 247 chain 52390 chr2 243199373 + 211198697 211199334 L1PA7 6471 + 4957 5614 57361 524 1 16 28 0 1 73 0 4 11 chain 22699 chr2 243199373 + 211199334 211199616 L1PA7 6471 + 5617 5899 117082 17 1 0 69 1 2 194 chain 47508 chr2 243199373 + 211199619 211200185 L1PA7 6471 + 5903 6469 60839 566 chain 26535 chr2 243199373 + 211200865 211201217 THE1A 353 + 0 353 97910 84 2 1 25 1 0 86 0 2 102 1 2 51 chain 66537 chr2 243199373 + 211206674 211209974 L1PB1 5432 - 23 3283 10851 5 1 0 9 0 3 6 5 1 17 2 0 22 2 0 14 1 0 4 3 1 19 9 0 11 9 6 10 1 0 44 1 0 16 2 1 53 2 0 5 24 19 9 1 0 19 5 0 8 1 4 262 33 29 104 0 1 75 4 0 123 16 18 431 7 1 31 0 2 28 0 1 35 2 0 230 13 7 40 3 7 136 6 8 264 0 2 426 1 0 108 0 1 127 0 1 64 0 1 391 chain 187618 chr2 243199373 + 211210010 211215347 L1PA8 5853 - 0 5086 9371 9 0 2 8 0 1 73 1 0 19 2 1 45 18 16 71 2 0 44 1 0 260 24 26 268 2 0 112 5 10 154 2 0 142 301 0 11 1 0 325 1 0 4 0 1 34 20 25 193 0 1 4 0 1 97 0 8 92 30 35 374 1 0 172 0 1 85 9 11 167 13 17 46 1 0 170 1 0 89 7 17 165 0 5 145 0 1 278 2 0 59 0 2 336 0 1 65 0 1 308 9 17 286 0 1 11 0 1 163 chain 534883 chr2 243199373 + 211215347 211221480 L1PA4 6152 + 1 6143 3608 1840 0 4 2158 0 1 175 0 1 1219 0 3 595 25 25 121 chain 23061 chr2 243199373 + 211221500 211222156 L1PA8 5853 - 5088 5745 9371 27 2 3 405 97 91 26 0 2 85 0 4 14 chain 50064 chr2 243199373 + 211222879 211225362 L1PB1 5432 - 3283 5414 10851 39 6 0 240 0 1 194 0 1 83 3 1 20 2 1 151 340 15 381 0 5 261 1 0 211 10 1 28 0 1 112 1 0 23 21 5 176 0 2 173 1 0 6 chain 45559 chr2 243199373 + 211230052 211230651 LTR10A 586 - 4 586 62449 261 0 12 110 35 6 193 chain 39438 chr2 243199373 + 211232753 211233614 HERVIP10F-int 4088 - 711 1623 70105 11 1 0 4 1 0 14 47 33 13 29 18 7 1 0 14 25 21 17 9 5 17 1 0 5 110 145 47 1 0 4 37 35 254 12 40 105 0 28 75 chain 29188 chr2 243199373 + 211234546 211234855 AluYa5 310 - 1 310 88108 309 chain 19347 chr2 243199373 + 211252508 211252732 AluSp 311 + 69 296 129079 22 0 3 202 chain 268739 chr2 243199373 + 211265968 211269496 L1PA6 6164 - 4 3659 15247 172 51 15 282 0 2 207 56 5 78 22 18 65 0 4 52 1 0 442 10 8 9 0 2 621 0 209 4 1 0 553 0 1 143 0 4 759 chain 87335 chr2 243199373 + 211289202 211290268 MER11C 1089 - 16 1089 40633 413 0 1 60 26 27 303 7 10 81 0 2 176 chain 35870 chr2 243199373 + 211291255 211291704 HERVK11-int 2540 - 305 758 75041 127 0 4 35 0 4 35 6 5 141 2 0 49 1 0 53 chain 86617 chr2 243199373 + 211291759 211292827 MER11B 1079 - 17 1079 40919 280 8 0 13 0 2 767 chain 75604 chr2 243199373 + 211295030 211295909 MER11D 897 + 0 897 45711 10 1 0 186 3 0 85 1 0 305 1 24 287 chain 9708 chr2 243199373 + 211297084 211297211 MER85 139 - 0 139 162046 30 1 13 96 chain 22995 chr2 243199373 + 211306632 211306916 AluSp 311 - 14 300 115643 20 0 2 264 chain 454247 chr2 243199373 + 211310643 211316208 L1PA7 6471 + 759 6467 8604 231 1 0 86 0 1 52 15 122 90 0 1 432 0 3 50 1 5 41 0 1 22 0 3 14 19 12 20 7 9 206 0 4 52 12 4 199 0 1 477 4 5 194 0 4 403 2 0 116 1 0 344 0 4 42 1 0 582 6 12 69 0 4 187 14 15 228 1 0 486 0 13 16 7 8 312 0 1 300 4 10 209 4 0 6 chain 23052 chr2 243199373 + 211354480 211354739 AluY 311 + 40 300 115382 86 0 1 173 chain 109202 chr2 243199373 + 211364995 211366581 THE1C-int 1605 - 8 1579 34394 335 2 1 51 0 1 30 76 79 129 1 0 147 0 1 113 0 1 12 7 6 89 0 1 41 0 1 103 85 11 269 0 54 96 chain 5618 chr2 243199373 + 211369962 211370041 MADE1 96 - 1 96 188889 48 1 17 30 chain 529899 chr2 243199373 + 211370144 211376261 L1PA4 6152 + 17 6146 4201 169 0 1 295 0 1 81 6 7 97 7 8 22 1 2 356 8 9 17 9 4 37 1 9 24 0 3 2126 1 0 952 0 1 99 6 8 52 0 2 18 0 1 61 1 0 355 4 3 241 6 0 226 0 4 670 2 1 167 chain 16705 chr2 243199373 + 211385034 211385282 L1PA8 5853 - 0 245 136391 93 2 1 18 2 1 10 0 1 29 24 22 70 chain 13530 chr2 243199373 + 211390783 211390942 L1PA7 6471 + 6137 6296 146242 159 chain 13056 chr2 243199373 + 211390968 211391116 L1PA7 6471 + 6322 6470 148010 148 chain 9399 chr2 243199373 + 211419376 211419482 L1HS 6032 + 5926 6032 163553 106 chain 41799 chr2 243199373 + 211463036 211463684 L1PREC2 3366 + 181 815 66901 16 11 6 6 1 0 5 0 2 16 1 0 12 2 1 9 1 0 4 1 0 33 2 1 113 11 10 25 21 19 9 1 0 260 7 6 81 chain 33162 chr2 243199373 + 211479001 211479389 L1PA7 6471 - 377 765 78965 388 chain 31768 chr2 243199373 + 211479389 211479755 L1PA7 6471 + 6091 6457 81219 366 chain 17958 chr2 243199373 + 211484612 211484816 L1PA7 6471 + 6264 6468 132961 204 chain 30194 chr2 243199373 + 211504054 211504368 AluYb8 318 + 0 314 84212 314 chain 183742 chr2 243199373 + 211530051 211532067 L1PA3long 6157 - 0 2016 20611 2016 chain 7711 chr2 243199373 + 211574322 211574618 MSTD 398 - 74 398 172855 57 134 144 51 37 55 17 chain 4211 chr2 243199373 + 211592564 211593077 L1MC3 1789 - 595 1066 204408 51 434 393 8 1 0 19 chain 52048 chr2 243199373 + 211599604 211600302 LTR12_ 688 + 0 688 57597 91 0 2 70 24 7 78 0 1 108 0 1 71 23 26 233 chain 144055 chr2 243199373 + 211623690 211625274 L1PA3long 6157 - 0 1585 25457 149 1 0 899 0 1 124 0 1 411 chain 167219 chr2 243199373 + 211625274 211627123 L1PA3long 6157 + 2684 4550 22365 6 0 1 268 0 1 216 0 1 113 0 10 1030 0 4 216 chain 169697 chr2 243199373 + 211635402 211637599 L1PA8 5853 + 3650 5847 22089 35 1 3 147 1 2 378 4 3 122 0 2 14 2 1 620 0 1 6 1 0 25 2 0 379 0 6 149 0 1 20 1 0 46 2 0 58 35 32 40 2 1 19 1 0 87 chain 30327 chr2 243199373 + 211638731 211639080 L1PA4 6152 + 5803 6152 83848 349 chain 21606 chr2 243199373 + 211639884 211640229 MSTA 426 + 0 424 121746 100 8 13 18 22 28 56 1 3 12 6 72 122 chain 10209 chr2 243199373 + 211674433 211674599 L1MA3 4352 - 24 190 159570 14 7 6 20 1 0 5 2 1 22 2 0 30 0 5 63 chain 110962 chr2 243199373 + 211685102 211686549 L1PA8 5853 + 4053 5791 33944 149 1 2 11 0 1 155 0 2 118 0 1 195 9 14 176 20 298 65 0 10 271 1 0 43 1 0 46 2 0 69 1 0 8 13 13 40 2 1 19 2 1 30 chain 33066 chr2 243199373 + 211691865 211692457 L1PB3 3668 - 111 673 79102 24 7 5 25 4 0 21 27 7 8 0 4 28 14 1 8 0 2 32 37 36 65 1 0 62 4 6 112 11 14 102 chain 164164 chr2 243199373 + 211733159 211735368 L1PA10 4194 + 1925 4161 22784 181 21 22 93 3 7 425 1 2 21 4 8 9 0 3 64 4 5 61 1 0 129 7 1 97 0 1 77 4 1 4 0 1 154 3 21 20 0 1 396 4 6 109 0 2 266 6 4 45 chain 194135 chr2 243199373 + 211766788 211768931 L1PA3long 6157 - 1522 3669 19661 303 0 4 81 0 1 1069 1 0 689 chain 135639 chr2 243199373 + 211768931 211770433 L1PA3long 6157 + 4653 6156 26893 101 0 1 1401 chain 20822 chr2 243199373 + 211777385 211777658 THE1A 353 + 27 300 124536 79 5 4 185 0 1 4 chain 53757 chr2 243199373 + 211779545 211780381 L1P4 1494 + 559 1405 56503 133 1 4 238 0 4 141 43 46 84 51 54 87 5 4 36 2 0 15 chain 20625 chr2 243199373 + 211792232 211792607 THE1D 372 + 0 372 125207 160 98 95 25 0 1 60 1 0 31 chain 3424 chr2 243199373 + 211796823 211796861 tRNA-Gly-GGA 38 + 0 38 216710 38 chain 2989 chr2 243199373 + 211802826 211802859 MADE1 96 - 63 96 225250 33 chain 3174 chr2 243199373 + 211807188 211807248 L1ME1 1623 + 1093 1153 221439 32 7 8 15 1 0 5 chain 131381 chr2 243199373 + 211814849 211816315 SVA_C 1631 + 0 1618 27783 10 1 7 7 0 12 610 0 40 223 1 95 614 chain 13806 chr2 243199373 + 211816436 211816825 THE1D 372 - 0 372 145246 87 26 11 56 0 1 23 158 141 21 5 19 13 chain 93203 chr2 243199373 + 211838800 211839832 L1PA4 6152 - 0 1033 38598 910 0 1 122 chain 364319 chr2 243199373 + 211843510 211847942 L1PA7 6471 - 1 4442 11247 61 8 5 61 1 7 204 0 1 510 1 0 671 5 6 902 10 0 33 2 0 59 1 0 426 0 1 20 2 0 260 4 0 6 8 12 218 0 1 237 0 4 51 0 1 81 1 0 252 0 14 337 chain 220882 chr2 243199373 + 211847943 211850391 L1PA4 6152 - 9 2456 17825 2261 1 0 186 chain 51301 chr2 243199373 + 211867588 211868150 L1PA2 6032 + 5276 5841 58110 464 1 4 97 chain 21606 chr2 243199373 + 211883859 211886568 L1PB1 5432 - 2 2407 121752 11 2 1 14 1 0 13 1 0 21 1 0 22 19 16 5 2 0 13 0 13 20 1 0 45 1 0 15 2 1 47 1 0 5 1 0 3 1 0 7 6 2 12 3 2 4 1 0 24 2216 1899 25 0 21 144 chain 85732 chr2 243199373 + 211889526 211890607 MER11B 1079 - 0 1079 41254 20 11 0 28 0 1 153 0 1 102 6 8 219 6 5 4 0 1 307 0 5 161 1 0 41 0 1 22 chain 103098 chr2 243199373 + 211903267 211904490 L1PA6 6164 + 4781 6143 35967 50 0 1 90 2 134 161 0 1 97 0 3 689 8 11 9 1 0 116 chain 65669 chr2 243199373 + 211963142 211964311 L1PA15 4387 - 21 1174 50258 10 1 0 27 20 13 34 0 1 11 56 53 9 4 0 23 1 0 46 20 19 16 1 0 17 13 18 137 1 0 31 16 14 60 27 23 369 43 46 18 11 11 147 chain 2859 chr2 243199373 + 211988879 211988915 MLT1D 503 - 350 386 227675 36 chain 327045 chr2 243199373 + 212001047 212005152 HERVL-int 5654 + 1426 5654 12305 726 1 4 362 1 0 55 0 1 5 0 24 461 34 36 268 5 19 559 3 7 31 2 3 112 0 31 254 3 0 1049 5 52 169 chain 20896 chr2 243199373 + 212005152 212005496 MLT2A2 560 + 0 458 124293 169 60 65 67 3 112 45 chain 40042 chr2 243199373 + 212060086 212060528 L1PA4 6152 + 5700 6143 69258 338 0 1 104 chain 9020 chr2 243199373 + 212064662 212064800 L1PA8 5853 + 5718 5846 165490 19 20 11 15 1 0 83 chain 17365 chr2 243199373 + 212065355 212065576 L1PA7 6471 - 2 218 134611 8 5 0 208 chain 28067 chr2 243199373 + 212074614 212074918 AluYb8 318 - 2 318 92761 167 0 12 137 chain 113576 chr2 243199373 + 212081170 212082927 L1PB1 5432 + 2971 5423 33207 40 0 4 556 10 0 102 10 19 32 3 1 164 1 2 71 1 0 72 0 1 19 8 6 265 66 789 24 1 0 8 1 0 10 2 0 3 2 0 9 6 4 48 26 24 37 1 0 15 2 0 6 57 44 20 9 8 30 1 0 19 chain 549284 chr2 243199373 + 212084045 212090069 L1PA2 6032 + 0 6032 1541 74 0 1 182 1 0 2985 0 1 1273 0 5 884 1 3 458 5 0 7 0 5 154 chain 29204 chr2 243199373 + 212091674 212091980 AluYf4 310 - 4 310 88034 306 chain 10634 chr2 243199373 + 212094444 212094650 L1MA3 4352 + 4154 4347 157675 82 4 0 11 18 16 19 1 0 6 1 0 26 1 0 10 10 6 17 chain 22077 chr2 243199373 + 212105554 212105821 AluY 311 + 28 294 119896 103 1 2 136 2 0 25 chain 52470 chr2 243199373 + 212111406 212112092 L1PA8 5853 + 5177 5853 57316 385 1 0 18 0 6 24 2 0 19 0 1 49 1 0 8 2 1 7 0 8 34 22 4 15 5 4 83 1 0 10 chain 251092 chr2 243199373 + 212118659 212121480 L1PA5 6144 - 15 2836 16168 1055 0 1 1571 1 0 194 chain 184145 chr2 243199373 + 212126981 212130205 HERVH-int 3825 + 78 3825 20576 74 0 2 20 15 32 11 44 63 35 30 29 20 16 16 16 22 21 21 111 334 5 0 1 364 43 50 44 26 20 168 15 5 173 0 1 4 1 0 85 0 27 50 0 1 22 3 0 8 0 3 31 1 0 252 5 10 312 0 1 5 5 4 323 1 0 28 1 0 20 11 0 202 427 680 154 chain 49613 chr2 243199373 + 212132481 212133093 L1PA6 6164 - 3 616 59309 150 17 18 445 chain 22705 chr2 243199373 + 212133094 212133360 L1PA6 6164 + 5214 5492 117051 101 1 0 92 0 13 72 chain 6730 chr2 243199373 + 212151860 212152036 L1PA16 3655 + 3402 3578 179468 14 9 8 36 63 64 54 chain 11959 chr2 243199373 + 212195997 212196129 L1PA4 6152 + 6019 6151 152364 132 chain 40631 chr2 243199373 + 212212203 212212789 MER61-int 3695 - 0 590 68397 38 6 0 202 23 24 73 5 6 193 6 7 9 0 2 24 0 5 7 chain 15482 chr2 243199373 + 212292726 212292946 L1PA8 5853 + 5637 5853 139952 45 1 0 8 8 7 43 2 1 19 1 0 93 chain 23933 chr2 243199373 + 212351726 212351996 L1PA5 6144 - 3 273 110727 270 chain 114675 chr2 243199373 + 212372400 212374075 L1PA8 5853 + 4386 5853 32891 339 1 0 4 1 2 256 0 4 16 0 2 58 4 5 333 34 5 73 179 0 37 0 1 43 1 0 45 2 0 57 18 15 11 1 0 38 0 1 4 8 7 18 1 0 93 chain 13283 chr2 243199373 + 212377971 212378112 AluYb8 318 + 177 318 147160 141 chain 131963 chr2 243199373 + 212388118 212389663 LTR12C 1709 - 0 1707 27642 481 0 4 104 2 0 3 0 159 121 1 0 551 0 1 24 0 1 258 chain 7890 chr2 243199373 + 212400377 212400467 5S 121 + 0 90 171723 90 chain 25106 chr2 243199373 + 212427494 212427761 AluYa5 310 - 9 276 104254 267 chain 82123 chr2 243199373 + 212442169 212443241 L1PA10 4194 + 3068 4146 42715 311 6 5 4 0 1 135 0 1 118 0 4 6 7 11 425 2 1 5 0 1 19 5 2 29 chain 58851 chr2 243199373 + 212444931 212445978 L1PB1 5432 + 4529 5418 53486 45 1 0 47 1 2 9 8 4 174 3 0 293 130 11 24 1 0 8 1 0 10 6 2 11 6 4 40 7 6 18 1 0 35 9 8 16 3 0 9 40 27 14 2 0 24 1 0 21 1 0 9 0 1 5 2 0 12 chain 4313 chr2 243199373 + 212451637 212451690 MLT1C 463 + 26 79 203055 53 chain 44517 chr2 243199373 + 212456643 212457187 LTR6B 557 - 0 557 63559 56 0 19 84 1 0 29 1 6 77 15 4 255 0 1 26 chain 5832 chr2 243199373 + 212478210 212478296 L1MA1 4479 + 4080 4162 186843 27 2 0 35 1 0 10 1 0 10 chain 82141 chr2 243199373 + 212492896 212493827 L1PA4 6152 - 0 931 42433 6 0 2 250 1 0 600 1 0 73 chain 90565 chr2 243199373 + 212493827 212494850 L1PA4 6152 + 4196 5218 39446 58 2 1 963 chain 13950 chr2 243199373 + 212531720 212531916 MER30 238 - 0 212 144752 113 4 19 68 1 2 10 chain 5751 chr2 243199373 + 212548821 212548893 LTR26 622 + 0 72 187629 72 chain 26361 chr2 243199373 + 212551259 212551543 AluYb8 318 - 0 282 98570 192 2 0 90 chain 22645 chr2 243199373 + 212625648 212625944 AluSc5 308 + 0 306 117354 78 0 9 176 10 13 24 2 0 6 chain 78113 chr2 243199373 + 212647908 212648816 L1P1 4361 - 33 941 44453 23 1 0 108 0 1 48 1 0 472 1 0 171 2 4 81 chain 471514 chr2 243199373 + 212671873 212677903 L1PA6 6164 - 2 6164 7988 144 2 1 6 0 1 17 2 0 6 12 14 374 0 18 266 1 2 70 7 6 342 6 5 431 0 1 359 4 443 471 2 3 981 322 0 755 2 1 193 9 0 336 2 10 385 4 5 35 15 0 7 0 14 48 2 3 11 3 0 398 chain 28696 chr2 243199373 + 212675387 212675698 AluYb8 318 - 9 318 90345 183 2 0 126 chain 5839 chr2 243199373 + 212686751 212686851 L1MA5A 2387 + 2118 2219 186777 37 2 0 12 1 5 15 2 1 31 chain 5720 chr2 243199373 + 212717213 212717341 MER6B 211 + 29 211 187921 22 1 0 31 15 0 9 4 19 23 6 61 17 chain 69480 chr2 243199373 + 212727537 212728513 LTR12 884 + 0 869 48618 24 1 0 38 107 0 32 0 2 244 3 4 34 2 0 491 chain 4917 chr2 243199373 + 212727616 212727670 LTR12 884 + 276 330 196081 54 chain 6672 chr2 243199373 + 212731651 212731750 LTR9B 643 + 472 561 179888 53 11 1 35 chain 42954 chr2 243199373 + 212747666 212748173 L1PA4 6152 + 5628 6143 65470 100 8 15 295 0 1 104 chain 557173 chr2 243199373 + 212753261 212759296 L1PA2 6032 + 1 6029 593 995 7 0 273 4 5 2779 2 0 433 0 1 1542 chain 3627 chr2 243199373 + 212809476 212809525 MER5A 189 - 52 99 213203 8 2 0 39 chain 12499 chr2 243199373 + 212817970 212818116 L1PA7 6471 + 6321 6465 150243 138 2 0 6 chain 82757 chr2 243199373 + 212836015 212837250 L1PA13 3608 + 2094 3481 42434 26 0 1 21 1 9 85 0 1 108 1 4 99 6 10 170 6 0 12 0 134 28 4 5 90 0 7 99 0 4 79 29 36 7 1 0 28 20 19 97 2 0 62 1 0 54 1 0 4 5 4 46 2 0 5 2 0 17 1 0 16 chain 6249 chr2 243199373 + 212848802 212849003 MLT1A0 366 - 97 289 183175 25 44 34 39 59 60 34 chain 11093 chr2 243199373 + 212856738 212856866 THE1A-int 1579 - 1444 1572 155830 128 chain 24647 chr2 243199373 + 212856921 212857227 THE1A 353 - 40 353 106737 205 1 0 14 3 11 83 chain 12798 chr2 243199373 + 212862772 212862919 L1PA4 6152 + 6005 6152 149056 147 chain 4673 chr2 243199373 + 212868178 212868259 MER51A 677 + 2 82 198838 36 12 11 33 chain 60643 chr2 243199373 + 212875130 212876028 MER11A 1151 - 166 1144 52495 5 0 1 11 1 0 26 20 57 18 17 5 12 8 0 3 8 0 11 25 1 296 0 1 94 0 1 149 4 0 66 0 88 30 0 2 22 1 9 50 5 4 16 chain 3235 chr2 243199373 + 212876109 212876145 MER3 215 - 168 204 220317 36 chain 528925 chr2 243199373 + 212919549 212925681 L1PA5 6144 + 3 6130 4312 321 0 3 237 0 4 6 0 15 1724 1 0 885 3 0 75 7 1 1295 1 0 315 0 1 401 17 1 96 1 0 747 chain 8362 chr2 243199373 + 212933754 212933858 THE1B 368 + 244 348 169068 104 chain 17488 chr2 243199373 + 212957472 212957692 L1PA7 6471 + 6240 6468 134293 54 0 1 13 1 8 152 chain 6171 chr2 243199373 + 212958788 212958870 MSTB 430 + 0 82 183789 18 1 0 42 0 1 21 chain 114278 chr2 243199373 + 212970800 212972370 THE1B-int 1605 + 0 1600 33004 68 0 1 10 1 7 24 10 13 278 1 3 18 4 29 600 39 44 185 5 1 52 23 15 252 chain 23453 chr2 243199373 + 212972375 212972739 THE1B 368 + 0 368 113364 169 1 0 23 46 51 59 2 1 8 0 1 56 chain 45371 chr2 243199373 + 213013399 213013898 L1PA3long 6157 + 5656 6157 62634 494 0 2 5 chain 132286 chr2 243199373 + 213031160 213032774 L1PA8A 6298 + 4678 6290 27566 141 6 0 135 1 2 533 0 3 252 13 12 252 0 1 281 chain 9322 chr2 243199373 + 213052033 213052148 L1PA2 6032 + 5904 6021 163941 59 1 3 55 chain 3024 chr2 243199373 + 213061795 213061910 LOR1a 498 + 323 432 224490 23 56 51 9 2 1 25 chain 49353 chr2 243199373 + 213076355 213076993 L1PA8A 6298 - 8 662 59258 135 1 0 14 0 2 5 5 17 62 6 9 410 chain 87160 chr2 243199373 + 213076993 213078089 L1PA8A 6298 + 4534 5630 40708 291 6 2 28 1 0 6 0 1 353 1 0 17 0 1 129 0 1 36 0 1 89 1 4 116 2 1 20 chain 257387 chr2 243199373 + 213098729 213101860 L1PA7 6471 - 18 3168 15858 62 0 3 519 0 1 164 0 1 79 0 3 22 0 3 169 1 0 400 1 8 254 0 1 243 0 2 229 0 1 927 2 0 59 chain 63854 chr2 243199373 + 213139540 213140280 L1PA7 6471 - 42 782 51076 740 chain 30835 chr2 243199373 + 213140280 213140645 L1P2 5180 + 1870 2235 82651 365 chain 6519 chr2 243199373 + 213153186 213153271 MER61A 341 + 44 128 181093 41 1 0 43 chain 13069 chr2 243199373 + 213196780 213197150 THE1B 368 + 0 368 147953 44 198 196 128 chain 25222 chr2 243199373 + 213209703 213210001 AluY 311 + 0 294 103624 75 4 0 219 chain 80173 chr2 243199373 + 213232035 213233293 L1PB1 5432 + 4190 5424 43517 244 0 1 46 0 1 4 1 0 113 6 10 17 3 0 56 0 2 208 1 2 98 1 4 18 13 15 17 0 1 5 2 1 29 34 32 24 1 0 9 16 11 9 2 0 52 1 0 13 6 5 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 3198 chr2 243199373 + 213282295 213282330 Tigger4a 237 + 202 237 220985 35 chain 32882 chr2 243199373 + 213304846 213305272 MLT2A1 477 + 0 477 79393 142 0 1 26 1 5 204 5 51 48 chain 451289 chr2 243199373 + 213305272 213310912 HERVL-int 5654 + 0 5644 8727 245 4 0 222 3 8 229 1 2 72 33 1 97 12 13 35 0 3 191 4 0 248 0 1 11 0 1 72 15 45 607 8 6 217 0 1 538 23 21 158 1 2 513 0 1 277 0 1 948 2 1 5 0 1 425 2 0 216 0 1 148 0 3 58 chain 32878 chr2 243199373 + 213310922 213311402 MLT2A1 477 + 0 477 79399 142 0 1 26 1 5 211 60 52 40 chain 4213 chr2 243199373 + 213330933 213330980 MER8 282 + 2 49 204384 47 chain 26001 chr2 243199373 + 213392430 213392725 L1PA3long 6157 - 1 296 100013 4 1 0 90 0 1 200 chain 24721 chr2 243199373 + 213421959 213422251 AluY 311 + 0 299 106320 125 1 2 21 0 6 145 chain 22635 chr2 243199373 + 213423672 213423966 AluSc5 308 - 14 297 117404 7 4 0 161 8 1 114 chain 10814 chr2 243199373 + 213426757 213426870 AluYa8 305 + 192 305 156924 113 chain 11991 chr2 243199373 + 213445733 213446140 L1MA7 2200 - 118 491 152237 26 139 107 118 83 82 29 1 0 11 chain 200970 chr2 243199373 + 213447854 213450259 L1P2 5180 - 1755 5178 19145 63 0 1 186 1 0 65 0 2 144 0 4 40 0 1 213 0 3 149 0 1 233 0 1 115 3 0 108 1 0 914 4 13 73 1 1002 92 chain 71664 chr2 243199373 + 213450497 213451341 L1P1 4361 + 3481 4341 47624 429 0 19 221 1 0 161 1 0 17 2 1 12 chain 65865 chr2 243199373 + 213497915 213498659 L1PA4 6152 - 0 745 50161 148 0 1 596 chain 13161 chr2 243199373 + 213518811 213518980 L1PA16 3655 - 79 247 147609 127 1 0 41 chain 69541 chr2 243199373 + 213566613 213567361 L1HS 6032 + 5278 6026 48593 748 chain 19778 chr2 243199373 + 213580200 213580565 THE1D 372 + 2 361 127881 54 31 22 22 3 5 58 49 53 7 4 0 52 0 1 85 chain 9323 chr2 243199373 + 213585293 213585511 LTR12C 1709 - 800 940 163939 50 79 2 20 1 0 27 0 1 4 2 1 35 chain 3789 chr2 243199373 + 213589064 213589105 THE1B-int 1605 + 1559 1600 210535 41 chain 32257 chr2 243199373 + 213606146 213606496 L1PA3long 6157 - 8 358 80427 350 chain 242897 chr2 243199373 + 213618063 213621365 L1P2 5180 + 565 3865 16618 171 43 22 29 3 18 331 1 0 83 10 9 116 62 63 97 9 5 249 8 10 558 0 1 248 16 20 76 0 1 517 2 1 495 19 21 159 chain 428710 chr2 243199373 + 213621384 213627510 L1PA7 6471 + 5 6455 9338 131 26 12 61 156 353 20 25 24 8 0 1 33 0 19 50 105 190 26 31 31 61 44 65 24 22 5 126 4 29 5 1 0 9 8 9 51 217 228 70 68 77 361 0 1 554 1 2 154 0 1 688 14 13 73 0 3 929 0 1 947 2 1 90 3 2 419 20 6 121 3 1 218 7 6 6 0 1 134 chain 5937 chr2 243199373 + 213631026 213631130 MER3 215 - 0 129 185810 23 9 36 20 3 0 6 0 1 43 chain 540871 chr2 243199373 + 213649852 213655992 L1PA4 6152 + 0 6150 2682 796 0 1 174 0 1 922 0 5 576 0 1 1702 0 1 901 0 1 1069 chain 246018 chr2 243199373 + 213723617 213726422 L1PA5 6144 + 3322 6131 16449 1076 1 0 6 2 0 600 0 1 98 0 1 189 1 5 69 0 1 763 chain 524808 chr2 243199373 + 213740445 213746612 L1PA5 6144 + 0 6143 4702 62 1 0 58 0 14 105 0 5 304 0 1 152 0 1 461 15 6 2816 0 1 518 8 0 879 1 0 307 1 4 382 24 0 10 15 12 37 3 0 8 chain 364468 chr2 243199373 + 213748905 213753323 L1PA7 6471 + 2044 6459 11242 588 0 1 160 0 1 32 29 15 45 0 4 247 18 12 76 3 4 268 1 0 39 0 1 7 0 4 186 1 0 359 0 1 112 4 3 26 0 1 38 0 2 280 0 1 469 0 1 1101 0 1 221 1 2 107 chain 5408 chr2 243199373 + 213767770 213767867 L1PB1 5432 - 107 190 190908 28 14 1 16 1 0 38 chain 5764 chr2 243199373 + 213856834 213856900 Tigger3b 1229 + 38 104 187503 66 chain 10224 chr2 243199373 + 213877990 213878120 MER85 139 - 0 138 159494 27 2 0 12 0 10 89 chain 21912 chr2 243199373 + 213948440 213948762 MER1A 529 + 204 523 120582 94 5 0 30 7 8 63 0 3 55 16 14 52 chain 77789 chr2 243199373 + 213952220 213953128 L1PA5 6144 - 0 896 44621 153 8 1 200 4 0 496 1 0 46 chain 10522 chr2 243199373 + 213988210 213988336 L1PA5 6144 + 6018 6144 158156 126 chain 28418 chr2 243199373 + 214055968 214056277 AluYb8 318 - 12 318 91509 180 3 0 126 chain 73555 chr2 243199373 + 214074584 214075553 MER57-int 2662 - 1152 2136 46758 106 1 0 34 1 3 257 5 9 223 0 8 271 15 17 56 chain 87187 chr2 243199373 + 214121353 214122388 L1PA7 6471 + 5425 6467 40696 196 1 0 77 0 2 133 1 2 156 5 7 69 0 1 388 0 2 9 chain 122695 chr2 243199373 + 214142049 214143610 THE1B-int 1605 + 17 1605 30166 90 0 3 320 1 26 63 1 0 537 5 4 291 0 1 253 chain 4848 chr2 243199373 + 214165742 214165820 MADE1 96 + 0 95 196800 23 8 25 47 chain 60798 chr2 243199373 + 214171932 214172598 L1PA3long 6157 - 1 687 52427 455 0 20 211 chain 13286 chr2 243199373 + 214173661 214173906 Tigger4b 360 - 93 360 147149 128 59 82 47 1 0 10 chain 23785 chr2 243199373 + 214193535 214193886 THE1B 368 + 0 368 111560 4 0 1 39 0 15 81 3 0 29 1 0 28 4 0 39 13 14 56 5 13 49 chain 123237 chr2 243199373 + 214193886 214195460 THE1B-int 1605 + 0 1598 29965 24 3 4 325 4 1 74 1 26 428 6 7 669 1 0 12 3 4 24 chain 400415 chr2 243199373 + 214209122 214213630 L1PA4 6152 - 18 4532 10084 442 1 0 292 0 1 1460 0 1 30 0 1 218 4 0 70 1 0 1192 4 7 109 0 6 685 chain 493844 chr2 243199373 + 214218623 214224628 L1PA6 6164 - 6 6164 7185 93 1 6 202 6 5 509 0 24 1185 5 0 209 0 121 62 0 2 440 1 0 75 0 1 34 0 1 4 3 0 5 0 2 370 7 0 432 1 0 9 0 1 40 0 1 658 5 5 215 0 1 490 0 1 15 0 4 345 4 5 104 1 2 65 1 0 4 0 1 225 6 7 11 0 5 8 14 9 51 1 2 24 1 4 64 chain 18498 chr2 243199373 + 214231143 214231452 THE1B 368 - 57 368 131502 5 2 0 66 1 0 10 12 15 13 0 1 9 10 12 11 1 0 55 8 9 94 1 0 11 chain 138953 chr2 243199373 + 214231513 214233089 L1PA5 6144 - 0 1577 26316 459 2 1 264 0 1 26 0 1 825 chain 54684 chr2 243199373 + 214233091 214233711 L1PA5 6144 + 3933 4556 55917 21 0 1 384 0 2 215 chain 31010 chr2 243199373 + 214242666 214243058 MLT2A1 477 - 84 477 82494 8 1 0 141 1 2 72 10 7 142 0 4 17 chain 212254 chr2 243199373 + 214243066 214245717 HERVL-int 5654 - 8 2716 18344 192 1 0 54 0 1 122 3 6 196 0 1 232 12 13 150 1 2 120 1 0 139 0 1 315 1 2 256 5 6 512 1 2 111 6 55 161 1 0 59 chain 28685 chr2 243199373 + 214252155 214252477 AluYa5 310 - 0 310 90384 60 12 0 250 chain 89241 chr2 243199373 + 214267152 214268140 L1PA4 6152 - 1 989 39871 459 2 1 306 0 1 221 chain 118180 chr2 243199373 + 214268140 214269447 L1PA4 6152 + 3847 5155 31735 91 0 1 1216 chain 10165 chr2 243199373 + 214271372 214271505 LTR10F 562 + 431 562 159776 43 2 0 88 chain 190731 chr2 243199373 + 214273858 214276610 HERVIP10FH-int 2884 + 149 2876 19977 59 5 0 79 8 4 107 7 0 117 0 5 80 0 1 26 1 0 239 0 5 131 5 6 200 2 0 158 6 0 14 15 9 10 1 0 7 1 0 62 5 1 68 25 8 39 11 220 13 0 5 228 3 0 200 1 0 24 1 0 423 0 3 5 1 0 49 5 4 14 1 0 13 13 7 32 205 23 8 2 0 16 2 0 5 chain 34500 chr2 243199373 + 214276674 214277170 LTR10F 562 + 0 512 76908 81 7 12 14 17 0 123 23 53 188 2 0 41 chain 13091 chr2 243199373 + 214295101 214295305 MER30 238 + 18 238 147877 90 3 0 6 4 26 34 18 15 49 chain 69793 chr2 243199373 + 214311288 214312257 HERVK11-int 2540 + 1378 2303 48475 266 0 3 72 17 12 104 1 0 122 1 0 67 1 0 80 0 4 121 95 52 22 chain 69022 chr2 243199373 + 214313335 214314373 MER11A 1151 + 0 1151 48796 22 1 2 61 0 91 47 4 8 9 0 1 51 10 6 142 6 7 91 0 1 60 4 0 6 6 10 69 5 6 109 30 63 22 18 0 36 0 1 60 6 7 163 chain 7138 chr2 243199373 + 214332926 214333034 MER52-int 3354 - 2302 2409 176489 55 14 13 39 chain 30082 chr2 243199373 + 214333463 214333874 MLT2A1 477 - 69 477 84557 11 1 0 186 6 7 30 9 6 168 chain 439771 chr2 243199373 + 214333874 214339474 HERVL-int 5654 - 0 5654 9058 53 0 3 368 18 5 317 0 1 33 0 2 5 3 1 268 10 9 630 0 1 416 0 8 279 0 1 505 19 20 574 1 0 41 1 0 4 22 44 635 17 18 92 1 2 122 0 15 65 0 1 198 0 1 73 0 2 427 11 15 114 6 14 91 4 6 8 2 0 167 chain 13609 chr2 243199373 + 214339521 214339689 MLT2A1 477 - 309 477 145944 168 chain 21037 chr2 243199373 + 214339689 214339988 MER52-int 3354 - 2406 2701 123780 122 1 0 9 6 5 11 3 1 147 chain 38015 chr2 243199373 + 214342020 214342585 THE1D-int 1627 + 1055 1622 72110 109 59 56 152 4 5 184 0 1 25 6 9 26 chain 11016 chr2 243199373 + 214350804 214351086 L1MA4 2864 - 55 299 156139 43 3 1 24 9 3 14 11 0 7 85 66 86 chain 15773 chr2 243199373 + 214351103 214351303 L1MA4 2864 + 2396 2597 139045 98 0 1 102 chain 48461 chr2 243199373 + 214372769 214373647 L1PA4 6152 + 5583 6152 60142 235 314 0 323 0 5 6 chain 43884 chr2 243199373 + 214374316 214374812 L1P1 4361 + 2906 3403 64349 272 0 1 224 chain 22035 chr2 243199373 + 214379194 214379427 L1PA2 6032 - 4 237 120085 233 chain 41441 chr2 243199373 + 214401065 214401524 L1PA3long 6157 - 511 970 67358 459 chain 47081 chr2 243199373 + 214401525 214402046 L1PA3long 6157 + 5635 6157 61140 189 0 1 332 chain 39785 chr2 243199373 + 214417352 214417903 MLT2A2 560 + 0 560 69650 35 0 5 140 1 0 86 24 24 109 3 14 47 7 1 99 chain 563351 chr2 243199373 + 214431955 214437986 L1HS 6032 - 0 6031 259 2989 1 0 2970 0 1 71 chain 10547 chr2 243199373 + 214440835 214441114 L1PREC2 3366 - 360 602 158058 35 38 21 24 77 62 10 3 0 4 1 0 44 1 0 42 chain 30183 chr2 243199373 + 214453244 214453562 AluYb8 318 + 0 318 84239 318 chain 5809 chr2 243199373 + 214463461 214463527 MER41E 591 + 0 66 187055 66 chain 11180 chr2 243199373 + 214466386 214466557 Tigger3a 397 + 45 268 155518 24 0 60 7 1 0 3 9 0 17 1 3 109 chain 47328 chr2 243199373 + 214472905 214473425 L1PA4 6152 - 6 527 60950 183 0 1 337 chain 5615 chr2 243199373 + 214477322 214477391 HY3 101 + 31 100 188922 69 chain 12062 chr2 243199373 + 214480616 214480779 L1PA8 5853 + 5688 5850 151935 6 0 1 41 7 6 18 1 0 90 chain 62090 chr2 243199373 + 214501627 214502481 L1PBa 3878 - 140 1004 51856 21 1 0 369 0 1 15 0 13 95 3 0 174 1 0 32 0 1 31 14 13 34 0 1 27 0 2 6 9 7 22 chain 30764 chr2 243199373 + 214507129 214507754 MLT2A1 477 + 0 385 82931 169 4 1 9 0 1 24 238 0 181 chain 21184 chr2 243199373 + 214507349 214507573 AluYa5 310 + 86 310 123262 224 chain 24033 chr2 243199373 + 214508139 214508491 L1M1 2793 - 1239 1583 110148 77 4 7 212 19 8 40 chain 50788 chr2 243199373 + 214525167 214525797 LTR14B 630 + 0 630 58443 77 0 1 4 2 1 547 chain 248556 chr2 243199373 + 214539110 214541855 L1PA3long 6157 - 1 2750 16331 16 1 0 1782 0 4 867 0 1 79 chain 123279 chr2 243199373 + 214541855 214543254 L1HS 6032 + 1878 3277 29833 694 5 0 9 1 6 690 chain 61318 chr2 243199373 + 214545381 214546136 MER4E 760 - 8 760 52194 142 1 0 82 2 0 167 2 0 289 4 5 43 0 1 23 chain 51789 chr2 243199373 + 214552606 214553388 MER4E1 777 - 8 763 57762 53 24 24 126 28 30 12 3 0 90 0 1 18 1 2 115 6 5 103 1 16 17 44 2 141 chain 6077 chr2 243199373 + 214566496 214566567 LTR12D 1347 + 622 693 184600 71 chain 11095 chr2 243199373 + 214566663 214567192 LTR12D 1347 + 438 1093 155822 86 78 0 12 1 32 14 34 88 16 29 23 31 182 308 33 2 1 11 chain 15244 chr2 243199373 + 214582595 214583027 L1PA7 6471 + 5333 5759 40677 108 1 2 64 12 11 106 16 9 70 0 1 55 chain 108550 chr2 243199373 + 214583031 214584340 LTR12C 1709 + 0 1310 34548 101 8 7 201 0 1 4 1 0 354 1 3 166 1 0 274 1 0 8 2 0 105 0 4 82 chain 24948 chr2 243199373 + 214584360 214585067 L1PA7 6471 + 5759 6467 40677 414 9 10 284 chain 23331 chr2 243199373 + 214629809 214630090 AluSc5 308 + 0 278 114021 46 3 0 232 chain 30992 chr2 243199373 + 214636607 214637019 L1PA10 4194 - 34 449 82535 10 1 0 34 3 0 30 5 4 110 0 2 26 0 4 7 1 3 185 chain 33570 chr2 243199373 + 214647644 214648006 L1HS 6032 - 24 386 78284 362 chain 4467 chr2 243199373 + 214648006 214648054 L1HS 6032 + 5984 6032 201143 48 chain 59030 chr2 243199373 + 214687354 214688064 L1PA8A 6298 - 9 723 53375 137 0 1 187 0 1 98 0 1 46 0 1 242 chain 3335 chr2 243199373 + 214736946 214737098 MLT1D 503 + 330 484 218317 15 68 69 17 22 23 30 chain 18119 chr2 243199373 + 214746193 214746540 THE1D 372 - 19 361 132547 119 2 0 5 0 1 4 1 0 24 31 34 21 2 0 12 7 11 36 38 30 45 chain 22118 chr2 243199373 + 214767020 214767374 THE1A 353 - 0 353 119715 219 44 58 7 14 0 21 0 1 33 2 0 14 chain 23061 chr2 243199373 + 214773499 214773759 L1PA3long 6157 - 0 259 115353 155 1 0 104 chain 121405 chr2 243199373 + 214779855 214781286 L1PA7 6471 - 1 1448 30564 333 0 1 218 0 8 208 0 2 81 0 1 12 0 4 579 chain 20795 chr2 243199373 + 214783147 214783500 THE1B 368 + 0 368 124621 100 18 21 48 1 0 22 18 23 10 11 19 63 13 13 49 chain 11762 chr2 243199373 + 214790977 214791212 L1PB1 5432 - 5 211 153206 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 13 10 7 18 29 12 16 1 0 43 1 0 16 chain 31329 chr2 243199373 + 214810060 214810454 MLT2A1 477 - 79 477 81938 75 1 0 149 1 5 26 0 1 142 chain 3740 chr2 243199373 + 214810515 214810577 MLT1A0 366 + 261 325 211337 40 0 7 6 6 1 10 chain 9584 chr2 243199373 + 214819235 214819362 L1PA8 5853 - 0 125 162672 93 1 0 19 2 1 12 chain 6626 chr2 243199373 + 214827345 214827430 MLT1B 390 + 284 371 180261 34 0 1 37 0 1 14 chain 4296 chr2 243199373 + 214836676 214836774 L1MA3 4352 - 0 94 203267 16 9 8 14 7 6 20 1 0 6 1 0 24 chain 40051 chr2 243199373 + 214855730 214856212 L1PA7 6471 - 1 487 69247 91 0 1 62 0 1 303 0 2 26 chain 118969 chr2 243199373 + 214863296 214864857 THE1A-int 1579 + 0 1579 31430 98 0 13 143 0 1 126 14 16 50 1 0 188 56 59 885 chain 13459 chr2 243199373 + 214895758 214895916 L1P1 4361 - 3307 3478 146489 101 0 13 57 chain 37261 chr2 243199373 + 214895916 214896329 L1PA3long 6157 + 5751 6157 73157 252 7 0 154 chain 75141 chr2 243199373 + 214903281 214904118 L1PA4 6152 - 14 851 45952 837 chain 19504 chr2 243199373 + 214904118 214904331 L1PA4 6152 + 5084 5297 128394 213 chain 397208 chr2 243199373 + 214974868 214979664 L1PA6 6164 - 2 6164 10190 151 0 1 5 1 2 58 0 1 449 0 4 168 1 8 10 4 0 638 0 3 15 1 0 94 0 4 134 12 13 193 0 1316 490 0 1 47 1 0 32 9 0 357 2 1 108 5 10 231 5 3 154 1 0 637 0 17 189 1 0 51 1 0 68 9 40 126 5 0 333 chain 90005 chr2 243199373 + 215017252 215018257 LTR13 1007 - 0 1007 39648 543 0 2 462 chain 128542 chr2 243199373 + 215036821 215038252 L1PA3long 6157 - 0 1430 28438 343 5 0 500 0 4 583 chain 79403 chr2 243199373 + 215038252 215039165 L1P1 4361 + 3435 4341 43585 561 4 0 154 1 0 155 1 0 23 2 1 12 chain 143901 chr2 243199373 + 215063236 215065277 L1PB2 3958 - 155 2194 25495 17 14 15 22 8 6 62 1 0 58 1 2 4 1 0 18 14 7 44 0 2 94 4 0 13 2 0 36 0 1 25 5 0 68 2 0 126 8 7 163 5 6 83 1 0 12 0 1 65 14 15 84 2 3 507 3 0 17 6 7 32 0 16 17 16 16 139 0 1 228 chain 9260 chr2 243199373 + 215073363 215073495 MER85 139 - 0 139 164261 29 6 3 7 0 10 90 chain 13062 chr2 243199373 + 215099126 215099476 L1PA11 4918 - 289 604 147983 18 137 106 17 1 0 13 2 0 68 2 0 12 3 2 13 0 3 46 1 0 17 chain 3808 chr2 243199373 + 215104090 215104158 L1MB2 1706 - 59 125 210251 36 1 0 9 7 6 15 chain 179598 chr2 243199373 + 215117023 215119233 L1PA7 6471 - 3 2224 21023 544 2 1 249 6 1 51 2 0 629 21 21 48 0 1 228 0 1 25 0 4 10 4 17 391 chain 511616 chr2 243199373 + 215137024 215143174 L1PA6 6164 - 2 6164 6012 150 5 0 4 1 6 23 0 4 805 0 1 273 4 0 638 7 8 5 0 1 314 2 0 233 0 1 499 0 1 154 0 4 1181 0 4 13 14 13 49 5 6 266 4 3 67 0 5 232 7 8 93 5 8 609 0 1 13 1 0 80 7 0 387 chain 29228 chr2 243199373 + 215156020 215156328 AluYa5 310 - 2 310 87921 308 chain 44816 chr2 243199373 + 215168926 215169438 MER9a2 513 + 0 513 63274 155 0 1 357 chain 225337 chr2 243199373 + 215170478 215173941 L1PA13 3608 - 120 3518 17569 15 6 5 18 3 1 6 2 0 41 8 6 10 1 0 24 4 0 28 1 0 61 2 0 113 4 3 25 1 0 232 0 1 209 1 0 67 1 4 37 17 16 8 0 5 2 4 0 60 0 6 9 0 1 60 32 14 59 0 1 310 8 7 20 1 2 38 4 0 23 2 0 7 0 1 9 0 1 151 4 0 316 0 5 42 0 1 559 22 24 149 0 1 44 2 0 27 14 0 8 1 13 50 1 0 18 2 0 30 79 69 119 8 6 69 136 113 19 chain 3395 chr2 243199373 + 215192081 215192119 MIR 256 + 84 122 217169 38 chain 79244 chr2 243199373 + 215218890 215219750 L1PA3long 6157 - 1167 2027 43933 860 chain 104161 chr2 243199373 + 215219751 215220923 L1PA3long 6157 + 5002 6157 35703 305 2 1 632 0 1 107 17 0 109 chain 23721 chr2 243199373 + 215252311 215252670 THE1C 375 - 14 375 111927 11 1 0 151 3 0 17 0 3 16 6 7 42 26 28 86 chain 28221 chr2 243199373 + 215286609 215286911 AluYg6 310 - 6 310 92232 80 0 2 222 chain 15979 chr2 243199373 + 215364184 215364372 L1PA5 6144 + 5942 6130 138411 58 1 0 112 0 1 17 chain 42876 chr2 243199373 + 215417961 215418585 MER4B 649 - 17 649 65564 79 0 8 201 1 15 101 11 0 14 11 10 15 5 3 66 1 0 8 1 0 58 25 27 27 chain 16878 chr2 243199373 + 215421836 215422191 THE1B 368 - 0 368 135893 56 7 6 66 118 132 108 chain 14752 chr2 243199373 + 215423599 215423758 L1PA2 6032 - 5 164 142093 159 chain 57298 chr2 243199373 + 215428357 215429121 L1PA10 4194 + 3378 4161 54339 23 0 1 277 1 0 30 0 3 8 8 28 369 9 6 27 1 0 11 chain 74080 chr2 243199373 + 215454427 215455268 L1PA4 6152 - 9 852 46469 202 0 3 384 1 0 254 chain 14450 chr2 243199373 + 215460706 215460860 L1PA3long 6157 + 6001 6155 143046 154 chain 17057 chr2 243199373 + 215460893 215461233 L1PB1 5432 + 5108 5420 135438 6 1 0 20 1 0 13 1 0 9 6 2 11 2 0 8 0 2 41 20 18 42 1 0 16 3 0 2 9 0 29 8 5 14 2 0 24 1 0 21 1 0 7 0 2 4 1 0 16 chain 8333 chr2 243199373 + 215467972 215468067 L1PA8A 6298 + 6056 6151 169210 95 chain 13428 chr2 243199373 + 215483363 215483511 L1PA4 6152 + 5998 6146 146582 148 chain 28579 chr2 243199373 + 215492154 215492508 THE1A 353 - 0 353 90823 155 1 0 198 chain 17089 chr2 243199373 + 215495014 215495377 THE1C 375 - 20 375 135356 107 7 1 13 4 6 11 38 39 39 10 14 22 0 1 16 33 25 47 2 0 14 chain 258232 chr2 243199373 + 215497103 215500000 L1PA4 6152 - 9 2915 15798 835 0 4 674 0 1 274 0 4 1114 chain 86654 chr2 243199373 + 215500000 215500955 L1P1 4361 - 1130 2085 40902 955 chain 4753 chr2 243199373 + 215515333 215515400 MLT1F2 592 + 506 570 197888 9 2 0 29 1 0 26 chain 197235 chr2 243199373 + 215522749 215525476 L1PA13 3608 - 123 2834 19408 18 1 0 14 19 9 48 2 0 10 2 1 51 1 0 61 2 0 113 1 0 32 7 6 74 12 4 124 10 23 80 10 7 166 5 4 217 0 1 454 37 31 265 4 5 258 0 1 95 8 12 137 0 1 389 chain 21437 chr2 243199373 + 215528663 215528928 AluSc8 310 + 38 307 122382 15 1 2 77 0 3 172 chain 20665 chr2 243199373 + 215532757 215533026 L1PA7 6471 - 1 267 125085 4 1 0 7 2 0 136 1 2 14 1 0 103 chain 21598 chr2 243199373 + 215536959 215537243 AluSq2 311 + 11 289 121775 123 17 11 144 chain 26005 chr2 243199373 + 215545119 215545406 AluYb8 318 + 24 309 99994 108 2 0 177 chain 551975 chr2 243199373 + 215548529 215554529 L1PA2 6032 + 37 6032 1193 219 1 0 109 3 0 553 1 0 5114 chain 43578 chr2 243199373 + 215582355 215582921 LTR12 884 - 11 884 64706 13 0 236 224 0 22 16 0 25 174 0 25 113 1 0 25 chain 29540 chr2 243199373 + 215583470 215583783 AluYb8 318 + 0 312 86478 132 1 0 180 chain 336445 chr2 243199373 + 215583783 215589088 L1PB1 5432 + 773 5424 11986 248 3 4 364 0 1 5 1 0 7 35 15 92 4 10 38 1 6 38 2 1 267 0 1 626 3 0 15 8 4 129 4 5 28 0 3 162 1 0 36 4 11 74 0 1 206 2 0 150 0 24 389 1 4 75 0 2 111 622 0 117 1 0 52 0 4 197 1 0 278 0 1 33 10 17 112 0 7 51 8 0 10 1 12 87 1 3 188 6 5 14 100 45 10 2 0 51 3 2 10 7 6 44 1 0 20 3 0 12 11 3 11 8 5 14 2 0 24 1 0 13 5 8 10 1 0 19 1 0 4 chain 53540 chr2 243199373 + 215586916 215587524 L1PA3long 6157 + 5565 6157 56652 375 0 1 107 17 0 109 chain 103764 chr2 243199373 + 215611452 215612590 L1PA4 6152 + 5014 6151 35782 15 1 0 1122 chain 2567 chr2 243199373 + 215620968 215620998 L1PB1 5432 + 4727 4757 232243 30 chain 42902 chr2 243199373 + 215621001 215621698 L1PB1 5432 + 4762 5427 65537 141 0 2 198 1 0 10 5 4 21 2 1 7 1 0 12 5 1 9 2 0 36 1 2 13 1 0 12 6 5 41 34 20 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 19 1 0 4 chain 24978 chr2 243199373 + 215648061 215648382 L1PA8 5853 + 5469 5783 104915 95 1 0 46 2 0 69 1 0 9 1 0 56 1 0 16 1 0 23 chain 110083 chr2 243199373 + 215648389 215649756 L1PA7 6471 + 5105 6470 34191 86 0 1 230 20 6 115 1 0 77 1 4 75 3 4 18 0 4 77 1 0 329 0 1 314 8 12 12 chain 73874 chr2 243199373 + 215667615 215668576 LTR5_Hs 974 + 0 974 46576 169 1 0 116 0 1 15 0 8 158 0 1 173 16 15 163 8 15 31 8 6 103 chain 10945 chr2 243199373 + 215693839 215693976 MER34A1 583 + 10 147 156425 137 chain 4040 chr2 243199373 + 215695352 215695399 MER2 342 + 136 183 206781 47 chain 173275 chr2 243199373 + 215699019 215701068 SVA_E 1901 - 0 1901 21681 19 1 0 161 1 0 499 0 1 89 41 0 37 1 0 124 97 0 44 4 0 89 1 0 21 1 0 669 2 0 148 chain 3515 chr2 243199373 + 215699789 215699830 SVA_E 1901 - 895 944 74205 27 5 13 9 chain 3805 chr2 243199373 + 215700006 215700088 SVA_E 1901 - 1016 1097 168077 4 0 1 63 1 0 5 1 0 8 chain 40166 chr2 243199373 + 215705107 215705559 LTR7 482 - 0 482 69085 204 1 32 136 1 0 110 chain 138817 chr2 243199373 + 215725995 215727946 L1PB1 5432 - 17 1938 26348 11 1 0 13 1 0 21 1 0 24 74 56 10 1 0 43 1 0 16 2 1 52 2 0 8 7 3 11 1 0 8 1 0 24 1 0 7 3 5 251 0 1 12 1 0 11 20 10 7 0 13 146 0 1 25 2 3 356 0 2 532 4 5 122 15 8 103 chain 86441 chr2 243199373 + 215736601 215737579 L1PA5 6144 - 4 982 40991 10 3 0 829 1 4 135 chain 9596 chr2 243199373 + 215740375 215740495 L1PB2 3958 - 205 326 162617 12 0 1 61 1 0 10 0 1 36 chain 18882 chr2 243199373 + 215748443 215748687 AluY 311 + 58 291 130419 68 6 0 89 5 0 76 chain 15485 chr2 243199373 + 215749644 215749807 AluYb9 318 - 0 163 139940 163 chain 4443 chr2 243199373 + 215752290 215752342 MLT2B3 573 - 521 573 201420 52 chain 6028 chr2 243199373 + 215760372 215760478 MER58A 224 + 53 160 185002 30 8 14 8 5 0 55 chain 13182 chr2 243199373 + 215772849 215773085 THE1D 372 - 38 291 147539 74 0 1 19 60 76 83 chain 22067 chr2 243199373 + 215775073 215775413 THE1B 368 - 0 368 119933 115 47 61 24 1 0 109 0 15 44 chain 34714 chr2 243199373 + 215790209 215790639 MER57A1 433 + 0 433 76605 270 10 13 150 chain 337926 chr2 243199373 + 215802690 215806793 L1PA7 6471 - 10 4114 11956 329 17 8 409 10 15 72 0 2 280 20 15 346 1 0 305 1 3 164 1 0 696 5 1 267 9 13 12 1 2 103 1 2 81 1 0 192 0 12 104 0 3 352 4 0 41 2 0 228 6 4 43 chain 224186 chr2 243199373 + 215827238 215830542 L1PA11 4918 + 1616 4578 17640 197 4 1 161 0 1 134 1 0 122 0 1 29 0 4 321 0 1 96 0 1 25 0 2 13 328 0 62 7 10 19 5 9 9 1 0 140 1 2 12 0 5 203 0 1 77 4 5 22 2 0 184 0 1 180 0 2 22 1 0 232 2 1 213 5 0 177 19 9 7 0 8 56 2 1 8 2 0 72 4 2 12 1 0 19 65 47 13 2 0 11 chain 13419 chr2 243199373 + 215856579 215856757 L1PA7 6471 + 6282 6461 146634 31 9 10 138 chain 7884 chr2 243199373 + 215884908 215885014 L1MB2 1706 + 1032 1135 171777 26 3 0 77 chain 9389 chr2 243199373 + 215922890 215923103 MER20 218 + 0 218 163612 13 18 17 51 13 14 55 1 11 17 29 24 16 chain 24870 chr2 243199373 + 215935113 215935400 L1PA3long 6157 - 0 291 105521 43 0 8 53 4 0 187 chain 3396 chr2 243199373 + 215963693 215963761 MLT1F1 559 + 0 70 217164 26 18 20 24 chain 7394 chr2 243199373 + 216012557 216012711 L1MA3 4352 - 0 148 174806 21 7 3 12 1 0 28 1 0 6 1 3 9 13 11 55 chain 2870 chr2 243199373 + 216027383 216027416 L1PB1 5432 + 1955 1988 227522 33 chain 128515 chr2 243199373 + 216027480 216029021 SVA_B 1603 - 23 1583 28447 404 0 2 165 0 81 22 0 1 22 4 0 109 40 0 556 13 0 22 1 0 155 4 3 7 6 0 11 chain 242414 chr2 243199373 + 216029087 216032476 L1PB1 5432 + 2002 5391 16647 262 19 14 82 3 2 137 0 1 23 8 9 30 6 5 227 0 1 47 2 0 49 0 3 14 0 1 134 5 76 495 0 1 109 37 13 473 1 0 395 19 16 446 54 41 6 1 0 26 1 0 7 16 11 11 5 3 45 22 20 43 1 0 15 1 0 5 65 50 20 1 0 21 chain 15494 chr2 243199373 + 216033291 216033489 L1PA8 5853 + 5658 5853 139916 21 1 0 61 2 1 19 1 0 93 chain 48720 chr2 243199373 + 216036966 216037510 L1PA4 6152 - 9 553 59937 544 chain 20627 chr2 243199373 + 216048351 216048707 AluSc5 308 + 10 308 125201 43 34 25 71 57 8 151 chain 14351 chr2 243199373 + 216059676 216059839 L1PA5 6144 - 1412 1576 143083 109 0 1 54 chain 124023 chr2 243199373 + 216059839 216061563 L1PA5 6144 + 4739 6144 29694 684 1 0 345 318 0 376 chain 206300 chr2 243199373 + 216075393 216078046 MER4-int 2692 + 11 2692 18767 25 2 0 63 2 0 7 0 1 10 3 0 84 3 10 86 0 5 350 0 19 20 0 3 53 6 9 187 0 2 372 1 0 161 0 1 376 1 0 145 1 0 13 1 2 216 6 5 25 30 0 9 8 30 86 0 5 40 1 0 135 0 1 36 12 10 6 0 2 55 1 0 9 0 1 6 chain 31802 chr2 243199373 + 216078054 216078490 MER4A1 472 + 0 458 81162 140 1 2 84 18 39 193 chain 11478 chr2 243199373 + 216084256 216084447 LTR12C 1709 + 932 1086 154389 113 43 6 35 chain 536208 chr2 243199373 + 216084972 216091054 L1PA4 6152 + 6 6151 3419 245 4 0 209 6 0 120 1 0 124 1 0 336 0 1 1202 0 5 326 1 0 320 1 71 206 1 0 1463 0 1 249 0 1 86 0 1 329 1 0 517 1 0 333 chain 5839 chr2 243199373 + 216091065 216091147 LTR12C 1709 + 1496 1709 186779 19 3 134 60 chain 105452 chr2 243199373 + 216109689 216111019 LTR12C 1709 - 0 1708 35383 167 0 102 212 11 4 78 1 0 28 1 0 6 1 0 98 0 278 206 7 6 59 1 3 21 0 11 212 11 7 210 chain 542488 chr2 243199373 + 216117694 216123828 L1PA4 6152 + 3 6141 2432 706 1 0 3462 0 1 643 0 2 67 0 1 1013 1 0 105 0 1 6 6 7 124 chain 5293 chr2 243199373 + 216129099 216129307 MER63A 208 + 0 208 192088 26 81 90 36 36 27 29 chain 53535 chr2 243199373 + 216157810 216158409 L1PA5 6144 + 5542 6144 56657 204 0 3 395 chain 28106 chr2 243199373 + 216161359 216161668 AluYf5 307 + 0 307 92628 268 2 0 39 chain 26313 chr2 243199373 + 216173741 216174047 AluYf4 310 - 8 310 98774 6 4 0 296 chain 23240 chr2 243199373 + 216176015 216176327 AluSq2 311 + 10 311 114495 123 0 1 92 14 2 83 chain 21091 chr2 243199373 + 216235720 216235969 AluSg 306 + 10 259 123575 249 chain 5543 chr2 243199373 + 216347316 216347390 MER33 330 - 202 276 189626 74 chain 92107 chr2 243199373 + 216361446 216362517 MER11C 1089 + 0 1073 38935 563 5 7 5 2 0 17 0 1 301 0 1 178 chain 22261 chr2 243199373 + 216373975 216374310 MER47A 366 + 16 353 119069 18 1 0 15 20 27 141 8 5 42 1 0 89 chain 39354 chr2 243199373 + 216374548 216375026 L1PA7 6471 + 5992 6469 70249 316 2 0 141 1 2 18 chain 30049 chr2 243199373 + 216381525 216381930 MLT2A1 477 + 0 399 84650 169 4 1 9 0 1 23 1 2 121 9 1 4 0 1 51 0 2 14 chain 9478 chr2 243199373 + 216399969 216400280 L1MB3 1562 + 1163 1552 163167 35 33 125 14 1 0 5 17 16 24 77 67 19 5 4 52 4 3 25 chain 42402 chr2 243199373 + 216414206 216414747 MER41C 542 - 0 542 66145 487 5 6 49 chain 22284 chr2 243199373 + 216432647 216432927 L1PA7 6471 + 6185 6464 118980 136 4 3 140 chain 24477 chr2 243199373 + 216434006 216434293 AluSg4 309 + 12 299 107668 287 chain 22186 chr2 243199373 + 216435228 216435541 AluSg7 307 - 2 307 119422 41 5 6 19 14 4 83 1 4 6 3 0 10 0 1 131 chain 22559 chr2 243199373 + 216453741 216454012 L1PA5 6144 + 5872 6144 117768 195 0 1 76 chain 2743 chr2 243199373 + 216454154 216454191 Charlie4a 502 - 466 502 229574 21 1 0 15 chain 6181 chr2 243199373 + 216457098 216457175 L1MB8 1703 - 1136 1214 183728 66 0 1 11 chain 16264 chr2 243199373 + 216459938 216460231 LTR49 580 - 5 298 137567 9 2 1 72 65 64 70 0 2 75 chain 29831 chr2 243199373 + 216471243 216471631 MLT2A1 477 + 0 393 85345 140 1 2 27 1 5 219 chain 7525 chr2 243199373 + 216479648 216479732 MER41A 554 + 0 84 174013 84 chain 12983 chr2 243199373 + 216489775 216489924 L1PA6 6164 + 6013 6162 148299 149 chain 16154 chr2 243199373 + 216514417 216515084 L1PB3 3668 - 55 394 137885 14 7 4 11 5 4 13 5 1 37 3 1 25 1 0 3 1 0 18 315 7 29 27 22 33 2 1 54 9 8 38 1 0 16 chain 13806 chr2 243199373 + 216515665 216515818 AluYf4 310 - 10 163 145247 153 chain 8870 chr2 243199373 + 216515818 216515915 AluY 311 + 4 101 166279 97 chain 5938 chr2 243199373 + 216535935 216536089 MER5A 189 - 1 160 185801 19 43 47 30 15 16 47 chain 13602 chr2 243199373 + 216543653 216543887 L1MA3 4352 + 3847 4324 145968 22 7 249 62 1 0 54 0 7 17 2 0 19 16 14 26 1 0 7 chain 29662 chr2 243199373 + 216586335 216586769 L1PA8 5853 + 5420 5853 86018 23 3 1 115 8 7 42 2 0 69 3 2 9 9 15 37 2 1 19 1 0 20 3 4 69 chain 46556 chr2 243199373 + 216589547 216590345 L1PB1 5432 - 23 803 61552 5 1 0 13 1 0 16 6 5 21 32 27 13 18 6 7 3 0 16 1 0 59 2 1 53 2 0 9 16 11 11 1 0 22 3 0 8 5 6 40 8 10 345 0 2 12 0 13 49 chain 71387 chr2 243199373 + 216598878 216599912 L1PB1 5432 - 12 981 47753 16 1 0 13 1 0 21 1 0 24 2 0 12 10 7 30 14 1 59 1 0 16 2 1 53 27 20 13 1 0 22 41 9 297 0 1 179 3 0 175 chain 9190 chr2 243199373 + 216617154 216617274 L1PA7 6471 - 1 114 164603 6 7 0 107 chain 5009 chr2 243199373 + 216627792 216627871 MLT1A0 366 - 19 93 195039 21 9 4 49 chain 12319 chr2 243199373 + 216653024 216653287 AluJr4 308 + 10 272 150944 89 99 98 75 chain 21129 chr2 243199373 + 216662071 216662327 AluSc8 310 + 11 270 123453 120 1 4 135 chain 20813 chr2 243199373 + 216669004 216669285 AluSc8 310 + 27 308 124561 106 11 13 144 2 0 18 chain 531174 chr2 243199373 + 216683747 216690163 L1PA7 6471 + 0 6439 4059 412 2 0 230 9 10 778 0 1 164 1 0 546 0 1 130 0 3 358 5 0 287 0 2 311 0 1 91 0 1 158 1 2 5 1 0 14 1 0 45 1 5 92 1 7 182 2 0 668 0 3 200 0 6 242 0 1 440 1 2 157 0 1 27 1 22 11 19 0 823 chain 14199 chr2 243199373 + 216703521 216703716 MER2 342 + 87 278 143881 19 4 5 115 5 0 52 chain 4366 chr2 243199373 + 216718191 216718246 MER31B 477 - 127 183 202385 35 0 1 20 chain 25377 chr2 243199373 + 216725152 216725443 AluY 311 + 10 302 102797 16 0 2 221 1 0 53 chain 31449 chr2 243199373 + 216744553 216744966 MER1A 529 - 81 492 81731 7 1 0 264 8 7 74 0 4 6 10 6 43 chain 4702 chr2 243199373 + 216747414 216747547 L1MB8 1703 + 1430 1566 198500 49 10 12 13 41 42 20 chain 8540 chr2 243199373 + 216747656 216747789 MLT1B 390 - 0 128 168062 14 11 8 42 2 0 64 chain 49358 chr2 243199373 + 216751144 216751866 MER4A 717 + 0 717 59483 70 2 0 10 1 0 41 1 0 24 1 2 107 0 4 11 5 1 167 1 10 49 38 28 187 1 0 6 chain 35125 chr2 243199373 + 216753838 216754330 L1PA8 5853 - 0 491 76024 23 9 0 70 1 0 19 2 1 42 5 0 6 19 22 62 7 5 31 0 14 196 chain 5018 chr2 243199373 + 216754331 216754389 L1PA8 5853 + 5249 5307 194944 58 chain 21773 chr2 243199373 + 216757561 216757822 AluSp 311 + 27 288 121122 261 chain 13644 chr2 243199373 + 216761371 216761652 MLT1A0 366 - 52 341 145803 58 99 107 124 chain 13787 chr2 243199373 + 216785681 216785843 L1PA7 6471 + 6154 6316 145311 162 chain 13178 chr2 243199373 + 216785844 216785994 L1PA7 6471 + 6316 6470 147556 139 0 4 11 chain 39804 chr2 243199373 + 216787025 216787471 LTR7 482 + 0 475 69622 56 2 0 190 0 31 198 chain 299111 chr2 243199373 + 216787480 216791141 HERVH-int 3825 + 0 3825 13472 210 1 12 64 6 0 246 5 0 38 1 0 10 1 0 24 28 0 15 1 0 12 3 0 8 49 7 10 1 0 42 0 20 11 2 1 49 1 0 450 16 1 211 0 1 239 8 35 1404 8 218 487 chain 40953 chr2 243199373 + 216792396 216792849 LTR7 482 + 0 482 67973 54 2 0 176 0 31 221 chain 40565 chr2 243199373 + 216822545 216822989 L1PA4 6152 + 5707 6151 68487 444 chain 7064 chr2 243199373 + 216828191 216828314 MER33 330 + 153 281 176992 32 27 32 64 chain 32049 chr2 243199373 + 216835573 216836023 L1PA8 5853 + 5412 5848 80779 118 4 0 34 1 0 46 2 0 36 17 16 5 2 0 11 2 1 9 1 0 52 2 1 19 1 0 88 chain 195504 chr2 243199373 + 216841373 216843642 L1P2 5180 + 1763 4030 19540 1370 8 7 31 1 0 859 chain 28198 chr2 243199373 + 216848700 216849058 THE1B 368 - 0 368 92317 75 1 0 101 2 0 24 2 0 113 0 15 40 chain 527958 chr2 243199373 + 216852825 216859291 L1PA7 6471 + 5 6468 4407 173 8 9 49 5 0 5 6 11 144 7 8 22 29 30 17 0 1 168 10 9 52 0 1 642 1 2 76 0 1 891 0 1 322 0 2 458 1 5 393 6 0 73 0 3 85 2 1 658 18 0 168 0 1 554 5 0 72 4 3 349 0 5 141 8 10 89 0 1 114 0 1 553 0 1 35 0 13 6 9 0 26 3 0 9 chain 6109 chr2 243199373 + 216934688 216934827 Tigger6a 1079 + 646 787 184354 67 22 21 16 20 23 14 chain 38579 chr2 243199373 + 216935213 216935721 LTR3B_ 500 - 0 500 71325 62 7 0 135 24 23 153 2 1 22 0 1 103 chain 24558 chr2 243199373 + 216952900 216953190 AluY 311 + 0 286 107202 123 8 4 159 chain 24524 chr2 243199373 + 216971681 216971972 AluSp 311 + 13 304 107415 291 chain 24049 chr2 243199373 + 216989907 216990198 AluSp 311 - 1 290 110045 9 2 0 280 chain 21001 chr2 243199373 + 217000267 217000533 AluSz6 309 + 29 294 123914 104 1 0 161 chain 26429 chr2 243199373 + 217003964 217004319 THE1A 353 - 0 344 98308 127 0 3 71 17 4 38 2 1 100 chain 34804 chr2 243199373 + 217033803 217034477 MER49 923 - 91 796 76469 23 1 0 31 35 36 62 12 16 58 0 2 45 33 35 23 1 0 71 26 30 7 1 0 9 6 0 92 1 0 8 0 2 39 8 30 43 3 6 12 12 13 12 chain 20765 chr2 243199373 + 217034486 217034789 AluSc 308 + 0 308 124727 106 43 48 154 chain 24046 chr2 243199373 + 217045535 217045835 AluSp 311 - 14 311 110069 15 2 0 108 1 0 174 chain 172471 chr2 243199373 + 217089963 217092257 SVA_E 1901 - 0 1890 21765 180 1 0 499 0 1 262 2 1 31 399 0 91 1 0 19 1 0 672 2 0 134 chain 13356 chr2 243199373 + 217090938 217091081 SVA_E 1901 - 799 942 128590 143 chain 9854 chr2 243199373 + 217091082 217091337 SVA_E 1901 - 767 803 138487 5 219 0 31 chain 4183 chr2 243199373 + 217091087 217091269 SVA_E 1901 - 1070 1232 142249 14 99 0 4 1 0 29 2 82 33 chain 5658 chr2 243199373 + 217091137 217091200 SVA_E 1901 - 597 660 174426 63 chain 10248 chr2 243199373 + 217103769 217103987 MER33 330 + 68 285 159381 20 1 0 3 6 0 22 45 44 54 5 7 23 0 5 39 chain 36565 chr2 243199373 + 217112786 217113419 L1MA3 4352 - 8 614 74151 13 7 3 14 1 0 22 12 10 23 2 0 29 4 1 10 10 8 56 0 1 41 44 20 15 4 9 36 0 1 4 1 0 69 1 6 31 0 1 49 1 0 134 chain 24590 chr2 243199373 + 217133039 217133406 THE1D 372 + 1 372 107044 74 19 0 78 0 13 24 0 3 32 9 15 51 0 2 43 6 5 31 chain 19291 chr2 243199373 + 217152307 217152521 L1PA4 6152 + 5937 6151 129265 214 chain 324810 chr2 243199373 + 217188102 217191684 L1PA3long 6157 + 2559 6147 12400 612 1 0 774 1 2 839 3 9 1352 chain 18451 chr2 243199373 + 217212250 217212480 AluSg7 307 + 80 307 131638 51 0 1 157 4 0 18 chain 41895 chr2 243199373 + 217212654 217213520 MER41A 554 + 0 554 66763 88 319 0 196 4 5 55 0 1 60 0 4 21 0 1 123 chain 8276 chr2 243199373 + 217216125 217216226 HY3 101 + 0 101 169528 101 chain 53985 chr2 243199373 + 217248204 217248988 Tigger1 2417 + 1246 2027 56375 42 5 4 103 24 23 204 1 0 116 38 37 182 1 2 68 chain 547968 chr2 243199373 + 217319444 217325565 L1PA5 6144 + 0 6140 1713 1442 0 5 389 0 1 412 0 2 128 0 4 377 0 2 329 0 2 203 0 1 42 0 1 344 0 2 779 1 0 1675 chain 3098 chr2 243199373 + 217349124 217349169 MER33 330 - 252 295 222946 23 2 0 20 chain 8071 chr2 243199373 + 217350209 217350310 Tigger3c 601 + 377 479 170646 32 0 1 69 chain 21809 chr2 243199373 + 217392379 217392759 LTR47A 437 - 44 428 120990 11 6 10 26 0 8 32 23 39 68 35 10 26 1 2 152 chain 33863 chr2 243199373 + 217429738 217430477 LTR10A 586 - 0 586 77836 70 1 0 56 4 5 106 284 141 12 10 0 196 chain 26623 chr2 243199373 + 217431353 217431664 AluY 311 + 0 307 97580 130 4 0 177 chain 3588 chr2 243199373 + 217435415 217435507 MER45B 1037 + 796 887 213861 11 4 10 21 1 3 23 10 0 7 2 3 13 chain 23665 chr2 243199373 + 217438537 217438822 AluSp 311 + 8 298 112225 78 0 4 118 0 1 89 chain 10684 chr2 243199373 + 217478410 217478527 THE1A 353 - 11 128 157479 117 chain 14273 chr2 243199373 + 217481442 217481648 MER30 238 + 0 238 143639 15 0 18 70 8 0 13 7 29 93 chain 86742 chr2 243199373 + 217492276 217493488 L1PA16 3655 - 118 1399 40867 124 2 0 123 6 4 13 10 9 33 0 16 11 10 14 247 1 12 9 1 0 24 3 1 13 0 16 70 0 1 120 3 2 176 0 3 20 1 2 10 4 30 178 chain 15650 chr2 243199373 + 217508289 217508494 MER30 238 - 0 238 139431 35 0 1 77 4 18 74 0 18 15 chain 26487 chr2 243199373 + 217511257 217511610 THE1B 368 - 0 368 98089 121 6 0 6 21 43 29 1 0 169 chain 18130 chr2 243199373 + 217519972 217520340 THE1D 372 + 11 372 132521 45 43 35 10 4 5 60 30 34 25 1 0 9 20 16 26 0 1 95 chain 408328 chr2 243199373 + 217611239 217616726 L1PB1 5432 + 19 5417 9849 69 2 0 99 11 14 344 16 1 48 2 0 17 0 1 5 14 13 94 4 5 666 1 0 7 2 0 5 23 11 178 0 6 651 1 0 416 0 1 67 0 1 96 6 0 101 47 9 70 0 3 379 1 7 176 3 6 133 3 4 225 5 6 215 0 1 457 4 0 477 1 0 11 1 0 20 1 0 13 16 11 9 2 0 53 2 1 10 7 6 30 0 1 13 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 5545 chr2 243199373 + 217643231 217643297 MER41A 554 + 399 466 189614 31 0 1 35 chain 3977 chr2 243199373 + 217659450 217659495 MADE1 96 - 2 47 207725 45 chain 3912 chr2 243199373 + 217750473 217750563 LTR12C 1709 + 751 837 208672 17 31 27 42 chain 5657 chr2 243199373 + 217780327 217780401 MER121 330 - 157 231 188501 74 chain 3554 chr2 243199373 + 217789286 217789329 L1MB5 1630 - 626 669 214470 43 chain 19967 chr2 243199373 + 217820749 217821114 THE1B 368 - 0 368 127246 14 46 47 67 1 0 10 1 0 16 33 40 5 1 0 155 2 0 14 chain 21060 chr2 243199373 + 217824673 217824942 AluSc 308 + 0 265 123691 11 3 0 246 1 0 8 chain 533436 chr2 243199373 + 217841143 217847877 L1PA7 6471 - 3 6468 3781 139 1 0 4 10 12 223 0 1 83 1 3 382 1 0 189 305 0 477 1 0 394 0 1 724 0 1 229 4 1 4 1 0 43 5 9 112 0 1 800 0 9 45 0 2 221 0 1 4 1 0 298 0 2 155 0 3 616 0 7 334 0 5 6 6 1 364 0 7 151 1 2 400 chain 91217 chr2 243199373 + 217868242 217869244 L1PA3long 6157 - 0 1000 39230 148 1 0 613 1 0 239 chain 27988 chr2 243199373 + 217875821 217876142 L1PA5 6144 - 12 333 93041 321 chain 51156 chr2 243199373 + 217889278 217889875 L1PA5 6144 + 5533 6141 58215 181 1 3 381 0 9 34 chain 20178 chr2 243199373 + 217937691 217937940 AluSc 308 + 53 302 126595 249 chain 5876 chr2 243199373 + 217975058 217975133 MER53 195 + 1 76 186416 75 chain 222383 chr2 243199373 + 217997108 218000000 L1PA8 5853 - 7 2869 17735 86 1 0 17 10 9 21 19 20 14 2 1 70 2 0 44 1 0 141 0 2 406 12 10 122 30 1 1008 0 5 108 15 0 7 0 15 302 1 0 5 0 1 37 1 0 77 1 0 5 3 4 324 chain 174581 chr2 243199373 + 218033906 218035941 L1PA7 6471 - 14 2913 21529 326 1 0 421 0 1 58 0 1 26 0 3 683 0 1 134 0 1 126 0 2 171 0 856 89 chain 4023 chr2 243199373 + 218062359 218062440 MER20 218 - 24 97 207039 31 20 12 30 chain 21492 chr2 243199373 + 218075801 218076136 MER4D0 881 + 558 881 122173 5 1 0 73 65 54 191 chain 17641 chr2 243199373 + 218077743 218077980 AluSp 311 + 70 308 133872 95 1 3 97 13 12 31 chain 23095 chr2 243199373 + 218094162 218094444 AluSg7 307 - 1 293 115165 161 1 0 18 1 2 72 1 11 28 chain 29628 chr2 243199373 + 218102181 218102493 AluYb8 318 - 6 318 86126 312 chain 11612 chr2 243199373 + 218102498 218102675 L1PREC2 3366 - 2896 3072 153846 54 25 24 98 chain 3994 chr2 243199373 + 218109270 218109316 MER53 195 + 149 195 207471 46 chain 52660 chr2 243199373 + 218175946 218176508 L1HS 6032 + 5468 6030 57210 562 chain 2539 chr2 243199373 + 218177841 218177896 MamRep1894 122 + 2 57 232668 20 6 11 7 5 0 17 chain 25053 chr2 243199373 + 218197503 218197933 LTR7C 471 - 0 471 104530 32 0 2 32 1 0 38 23 25 68 1 0 32 2 0 29 9 5 42 0 3 64 35 77 22 chain 227227 chr2 243199373 + 218211639 218215036 L1PA13 3608 - 132 3495 17472 9 1 0 19 9 5 40 11 15 54 1 0 61 2 0 87 0 4 23 1 0 31 1 0 81 5 6 432 5 6 68 1 0 4 0 3 5 0 1 237 55 37 281 47 48 64 2 1 110 0 1 66 8 9 286 5 0 20 27 23 406 0 4 31 1 0 123 1 7 138 2 0 51 2 12 38 10 13 18 2 0 17 1 0 7 19 14 15 2 0 18 13 11 125 2 0 73 69 54 26 5 2 23 chain 145386 chr2 243199373 + 218242747 218244431 L1PA5 6144 + 4461 6143 25269 167 1 0 336 0 1 1023 1 0 114 0 1 29 3 1 10 chain 117709 chr2 243199373 + 218255037 218256567 THE1B-int 1605 - 11 1605 31891 65 1 0 217 0 35 68 9 10 425 0 1 64 31 34 215 7 32 428 chain 45244 chr2 243199373 + 218273361 218273909 MER41A 554 - 0 554 62776 81 0 5 37 0 1 430 chain 4690 chr2 243199373 + 218297019 218297100 MADE1 96 - 0 96 198636 22 1 0 15 6 22 37 chain 9085 chr2 243199373 + 218350546 218350811 Tigger3d 321 + 67 236 165144 73 8 9 41 91 20 13 26 0 13 chain 32644 chr2 243199373 + 218361460 218361911 L1PA8 5853 + 5410 5853 79772 154 1 0 44 6 4 70 1 0 5 2 1 52 6 5 15 1 0 67 2 1 25 chain 27332 chr2 243199373 + 218372766 218373145 THE1C 375 - 0 375 95164 64 1 0 114 22 19 178 chain 4708 chr2 243199373 + 218387807 218387861 MER5A1 166 + 39 93 198415 54 chain 19982 chr2 243199373 + 218389265 218389513 L1PA8 5853 + 5608 5853 127199 71 1 0 61 2 1 19 2 1 92 chain 20379 chr2 243199373 + 218407108 218407466 THE1D 372 - 12 372 125965 132 66 68 72 34 34 54 chain 52579 chr2 243199373 + 218407473 218408452 THE1D-int 1627 - 7 1627 57248 66 268 0 66 0 5 60 13 917 506 chain 22825 chr2 243199373 + 218408455 218408817 THE1D 372 - 0 372 116472 148 38 45 18 0 1 28 10 14 11 9 7 100 chain 76507 chr2 243199373 + 218425693 218426792 MER11A 1151 + 0 1151 45209 79 0 8 109 1 0 34 1 0 64 38 20 10 5 3 345 43 47 24 0 4 69 0 2 16 1 59 93 13 12 89 1 0 64 chain 14539 chr2 243199373 + 218426792 218426973 MER4E 760 + 582 758 142765 92 5 0 84 chain 23290 chr2 243199373 + 218445196 218445529 THE1C 375 - 39 370 114258 87 8 2 13 19 21 26 0 1 24 0 1 156 chain 28865 chr2 243199373 + 218455568 218455894 LTR17 781 - 455 781 89602 326 chain 108278 chr2 243199373 + 218456208 218457488 HERV17-int 4347 - 0 1279 34623 338 0 1 604 2 0 185 1 2 66 6 5 78 chain 7338 chr2 243199373 + 218461103 218461339 Tigger4a 237 - 0 237 175176 41 61 77 15 15 0 47 17 0 14 13 30 13 chain 294681 chr2 243199373 + 218539340 218542609 L1PA3long 6157 - 492 3753 13716 128 4 6 221 0 2 2574 10 0 93 1 0 92 1 0 145 chain 42802 chr2 243199373 + 218542619 218543099 L1PA3long 6157 + 5677 6157 65655 147 1 0 183 0 1 149 chain 27958 chr2 243199373 + 218546158 218546461 AluYa5 310 + 0 300 93136 132 3 0 168 chain 4714 chr2 243199373 + 218621832 218621885 MER53 195 + 9 62 198346 53 chain 22134 chr2 243199373 + 218623042 218623287 L1PA3long 6157 - 0 244 119654 147 1 0 97 chain 3233 chr2 243199373 + 218629031 218629076 L1PB3 3668 - 140 186 220367 25 1 0 6 0 2 13 chain 8353 chr2 243199373 + 218629376 218629507 LTR73 568 - 428 559 169103 18 0 1 32 2 1 38 5 6 31 1 0 4 chain 3044 chr2 243199373 + 218633742 218633776 L1ME1 1623 + 1142 1176 224122 34 chain 4925 chr2 243199373 + 218651524 218651647 LTR12C 1709 - 713 795 157777 42 41 0 40 chain 19061 chr2 243199373 + 218651651 218651905 LTR12C 1709 - 641 937 129939 71 0 2 136 4 44 43 chain 18804 chr2 243199373 + 218753221 218753583 THE1B 368 + 0 368 130666 106 131 137 125 chain 7022 chr2 243199373 + 218849778 218849907 MER30 238 + 88 235 177306 12 0 21 31 7 7 39 14 11 26 chain 4244 chr2 243199373 + 218890670 218890774 LTR16B2 458 + 294 404 203962 24 17 19 22 16 20 25 chain 3307 chr2 243199373 + 218908010 218908066 MER52D 1964 - 818 860 218841 10 14 0 32 chain 5054 chr2 243199373 + 218908155 218908248 MER52D 1964 - 721 806 194598 22 22 14 49 chain 82488 chr2 243199373 + 218960262 218961251 LTR5B 1012 + 0 1012 42543 123 0 14 352 1 0 147 0 10 366 chain 250333 chr2 243199373 + 218961265 218964799 L1PB2 3958 - 120 3621 16224 63 1 0 26 11 9 61 1 0 61 0 2 69 4 2 94 2 0 13 2 0 64 6 1 10 1 0 29 8 1 18 55 0 8 2 0 19 0 2 198 1 0 76 0 9 12 11 15 30 24 27 77 0 1 42 0 5 63 36 37 75 7 8 50 0 2 76 3 0 395 2 1 5 0 1 46 0 17 23 3 7 272 23 16 109 2 1 14 0 1 217 0 1 108 5 1 323 0 1 38 5 0 24 0 3 145 0 6 337 2 5 19 0 2 8 chain 6481 chr2 243199373 + 218965723 218965839 L1PBa 3878 - 2083 2198 181383 36 26 25 54 chain 28833 chr2 243199373 + 218965853 218966177 LTR12_ 688 - 2 326 89751 324 chain 513076 chr2 243199373 + 218967346 218973406 L1PA5 6144 - 16 6144 5878 224 6 28 65 0 1 501 0 1 20 7 8 905 0 2 199 0 27 215 0 1 761 1 0 12 1 0 220 0 1 592 0 1 36 1 0 722 0 1 415 9 0 157 1 0 163 37 37 13 4 1 619 15 27 18 1 15 120 chain 44697 chr2 243199373 + 218973414 218973983 LTR12 884 - 209 884 63382 299 2 0 38 0 1 8 0 107 222 chain 467088 chr2 243199373 + 218975681 218986192 HERV9-int 5642 - 0 5642 8145 17 2 0 3 4 0 19 28 5 12 2 1 60 2 1 26 3 1 37 5 3 95 1 0 131 1 0 562 3 9 282 4757 0 322 0 1 636 0 1 2311 3 0 15 80 0 301 1 0 188 2 3 600 chain 45223 chr2 243199373 + 218976978 218977489 MER9a3 513 + 0 513 62802 454 0 2 57 chain 235049 chr2 243199373 + 218978296 218981216 HERVK9-int 4720 + 54 4720 17026 4 1 0 66 1 0 7 51 49 135 0 6 607 4 5 121 0 4 120 0 185 133 0 924 87 0 1 143 13 652 4 1 0 315 9 0 241 0 1 526 2 1 329 chain 43241 chr2 243199373 + 218981216 218981729 MER9a3 513 + 0 513 65126 12 6 1 74 0 4 45 0 1 376 chain 55635 chr2 243199373 + 218986220 218986884 LTR12_ 688 - 0 688 55344 521 1 0 21 0 25 121 chain 44144 chr2 243199373 + 219009288 219009798 MER9a2 513 + 0 513 64022 196 0 1 257 0 2 57 chain 4336 chr2 243199373 + 219038092 219038148 MER45C 884 + 92 148 202768 56 chain 31628 chr2 243199373 + 219038749 219039171 LTR7B 505 - 9 505 81435 54 2 1 54 0 1 24 1 0 43 0 1 38 0 2 26 3 27 12 0 38 60 0 10 105 chain 292013 chr2 243199373 + 219040431 219044178 HERVH-int 3825 - 0 3825 13901 225 0 2 260 8 218 36 30 32 465 22 0 562 0 10 299 6 33 241 0 1 609 0 7 44 0 3 12 0 2 7 0 1 30 1 0 1 0 62 28 0 31 24 1 0 10 1 0 38 255 0 532 chain 7988 chr2 243199373 + 219043457 219043617 HERVH-int 3825 - 3293 3389 171129 12 64 0 84 chain 2174 chr2 243199373 + 219043617 219043641 HERVH-int 3825 - 3269 3293 216350 24 chain 29588 chr2 243199373 + 219044186 219044609 LTR7B 505 - 8 505 86243 55 2 1 54 0 1 24 1 0 43 0 1 38 29 0 3 0 93 68 1 11 105 chain 25603 chr2 243199373 + 219077026 219077321 AluSp 311 + 0 297 101711 91 0 3 38 1 0 165 chain 61623 chr2 243199373 + 219078051 219078732 L1PA3long 6157 + 5474 6157 52069 223 0 2 458 chain 22471 chr2 243199373 + 219091093 219091372 AluY 311 + 23 305 118149 109 0 1 133 1 3 36 chain 3789 chr2 243199373 + 219097661 219097702 MSTD 398 - 271 312 210527 41 chain 24084 chr2 243199373 + 219104692 219104975 AluSc5 308 - 25 308 109845 283 chain 3398 chr2 243199373 + 219110548 219110585 tRNA-Tyr-TAT 37 + 0 37 217114 37 chain 24006 chr2 243199373 + 219116669 219116956 AluSp 311 + 8 292 110295 76 3 0 208 chain 24385 chr2 243199373 + 219162451 219162735 AluY 311 + 11 297 108162 120 0 2 164 chain 6183 chr2 243199373 + 219165783 219165855 MER41A 554 - 82 155 183716 41 0 1 31 chain 8424 chr2 243199373 + 219167414 219167519 MER4E1 777 - 15 119 168716 95 1 0 9 chain 6102 chr2 243199373 + 219167969 219168071 MER4B 649 - 551 649 184389 36 3 6 9 1 0 17 6 0 30 chain 25344 chr2 243199373 + 219168294 219168596 AluSg7 307 - 3 307 102990 27 0 1 144 0 1 131 chain 64420 chr2 243199373 + 219213009 219213735 SVA_C 1631 - 17 750 50832 584 1 2 24 0 1 8 0 4 41 0 1 68 chain 44626 chr2 243199373 + 219215237 219217210 HUERS-P3b-int 2065 - 34 789 63450 57 0 4 28 2 1 58 4 0 17 306 0 31 23 20 14 2 0 72 7 5 29 1 0 9 0 3 46 1 0 23 2 1 12 2 0 41 17 17 18 12 10 12 899 0 32 1 0 18 4 0 67 0 1 57 0 3 49 chain 84188 chr2 243199373 + 219219296 219220262 LTR13A 966 + 0 964 41830 660 3 1 303 chain 24371 chr2 243199373 + 219226111 219226542 MER4A 717 - 182 717 108248 13 6 7 18 8 3 33 19 29 29 18 19 30 0 17 69 4 0 11 0 83 51 4 2 70 0 2 19 0 1 29 chain 14005 chr2 243199373 + 219238742 219238920 Tigger3c 601 - 71 247 144566 15 2 0 161 chain 23742 chr2 243199373 + 219256801 219257085 AluSp 311 - 21 310 111822 60 1 0 76 0 6 147 chain 24554 chr2 243199373 + 219285299 219285607 AluYf5 307 - 0 307 107229 40 10 8 51 1 2 206 chain 9840 chr2 243199373 + 219338510 219338761 Tigger3c 601 - 0 256 161396 23 42 41 13 14 13 22 11 39 9 21 0 96 chain 23926 chr2 243199373 + 219353382 219353657 AluSp 311 - 36 311 110771 275 chain 124645 chr2 243199373 + 219379872 219381428 L1PA8 5853 + 4303 5853 29494 60 11 5 586 1 8 42 3 0 5 1 3 70 1 3 35 0 1 350 3 0 93 1 0 44 2 0 69 3 2 9 1 0 52 2 1 19 2 1 54 1 0 12 0 2 24 chain 22715 chr2 243199373 + 219386063 219386413 L1PA8 5853 - 0 347 117009 23 13 14 15 0 4 37 2 1 18 2 1 29 1 0 18 1 0 14 3 2 69 2 0 44 1 0 58 chain 34760 chr2 243199373 + 219392998 219393409 L1PA7 6471 - 1 412 76525 411 chain 5086 chr2 243199373 + 219451534 219451600 MLT1A 405 + 323 389 194221 12 1 0 26 0 1 27 chain 27029 chr2 243199373 + 219473579 219473883 AluYf4 310 + 0 300 96190 145 4 0 155 chain 5884 chr2 243199373 + 219484523 219484593 U3 216 + 0 70 186337 70 chain 33518 chr2 243199373 + 219548311 219548684 L1PA3long 6157 - 1 375 78375 141 0 1 232 chain 22190 chr2 243199373 + 219550668 219550961 AluSg7 307 - 17 307 119399 77 11 9 72 1 0 132 chain 3689 chr2 243199373 + 219564474 219564614 MIR 256 - 106 251 212094 43 68 80 7 7 0 15 chain 7863 chr2 243199373 + 219573253 219573400 MER72B 755 - 469 631 171915 14 2 5 20 27 39 84 chain 20031 chr2 243199373 + 219592215 219592489 AluY 311 + 37 298 127039 87 0 2 54 6 0 87 4 0 24 5 0 7 chain 2343 chr2 243199373 + 219608329 219608365 L1MD1 2063 - 160 195 234850 20 2 1 14 chain 22862 chr2 243199373 + 219623684 219623970 AluSp 311 + 0 284 116273 79 2 1 135 1 0 69 chain 518119 chr2 243199373 + 219631401 219638106 L1PA6 6164 - 2 6160 5367 52 0 1 369 0 1 320 1 2 27 0 4 66 1 5 372 1 0 388 0 4 293 0 1 221 1 2 211 0 1 632 0 1 480 0 3 372 0 1 344 309 0 291 4 5 228 316 0 319 0 6 61 1 23 124 0 4 104 0 17 124 0 1 46 0 5 64 1 0 48 0 2 274 1 0 239 chain 34706 chr2 243199373 + 219649621 219650094 MER1A 529 - 0 484 76612 28 0 7 33 4 5 189 0 3 167 4 15 7 11 0 30 chain 100283 chr2 243199373 + 219654477 219657570 MER57-int 2662 - 41 2619 36697 29 15 9 24 8 5 4 1 0 7 1 0 18 60 21 68 8 3 10 2 1 78 0 1 4 13 12 70 0 1 41 8 7 232 0 4 11 4 3 45 18 31 40 17 0 99 1396 929 60 2 1 230 5 4 102 0 1 18 17 11 74 2 0 123 11 47 35 1 0 11 45 28 26 chain 231987 chr2 243199373 + 219658962 219662734 MER61-int 3695 - 0 3215 17197 46 20 14 72 17 21 98 12 14 76 2 0 204 2 0 39 0 1 38 1 0 106 40 38 28 1 0 37 1 0 69 1 2 14 8 13 155 2 0 295 0 14 113 0 3 53 0 2 221 0 1 118 10 5 81 0 1 87 316 0 97 0 1 84 2 1 20 4 9 43 0 19 193 0 2 28 306 0 126 1 8 29 10 23 80 2 0 86 5 8 9 1 0 52 4 3 5 0 3 79 0 4 52 0 1 71 chain 37904 chr2 243199373 + 219663850 219664347 LTR21A 479 + 0 468 72281 56 4 1 7 1 0 193 22 0 132 2 0 10 7 6 63 chain 16701 chr2 243199373 + 219666861 219667054 LTR10F 562 + 318 512 136403 151 0 1 42 chain 25141 chr2 243199373 + 219708193 219708493 AluSp 311 + 6 311 104057 143 1 6 156 chain 127770 chr2 243199373 + 219710661 219712071 SVA_F 1814 + 10 1565 28626 876 2 5 23 1 2 23 0 1 7 0 142 81 1 0 14 1 0 381 chain 37581 chr2 243199373 + 219753667 219754265 L1PB1 5432 - 9 574 72712 4 1 0 15 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 10 24 14 6 1 0 16 1 0 43 1 0 16 2 1 52 2 0 9 5 1 14 3 2 4 1 0 24 18 16 240 chain 7563 chr2 243199373 + 219777330 219778701 L1MB7 1623 - 200 757 173776 53 1245 432 68 1 0 4 chain 17044 chr2 243199373 + 219787552 219787784 MSTA-int 1630 - 5 241 135484 27 1 4 12 6 7 186 chain 165155 chr2 243199373 + 219795486 219797322 SVA_D 2077 + 0 2062 22638 691 0 40 172 2 0 8 0 36 40 0 51 51 0 3 105 0 1 149 0 97 618 chain 29182 chr2 243199373 + 219909054 219909391 L1PA6 6164 + 5822 6160 88132 193 0 1 144 chain 23254 chr2 243199373 + 219933175 219933463 AluSc 308 - 14 298 114422 14 4 0 270 chain 25937 chr2 243199373 + 219967454 219967753 AluYa5 310 + 11 308 100268 53 2 0 244 chain 14321 chr2 243199373 + 219986337 219986555 AluJb 308 + 57 296 143489 76 19 34 93 4 10 26 chain 128679 chr2 243199373 + 220065169 220066713 LTR12C 1709 - 0 1709 28398 481 0 4 107 3 1 5 1 0 71 1 163 40 1 0 78 0 2 443 1 0 4 0 1 259 0 1 49 chain 94941 chr2 243199373 + 220177359 220178727 LTR12C 1709 + 0 1709 38113 336 0 43 85 0 4 6 3 0 176 0 278 158 0 47 75 27 20 9 24 0 24 0 1 20 19 20 17 56 58 244 12 11 77 chain 24409 chr2 243199373 + 220185228 220185510 AluSp 311 - 19 301 108033 282 chain 45851 chr2 243199373 + 220211529 220212037 MER9a1 513 - 5 513 62179 508 chain 6397 chr2 243199373 + 220259592 220259672 LTR32 486 - 0 80 182048 80 chain 2675 chr2 243199373 + 220343110 220343164 MIR 256 - 111 167 230468 23 13 15 18 chain 23299 chr2 243199373 + 220383622 220383896 AluYf4 310 - 12 281 114208 11 5 0 258 chain 11562 chr2 243199373 + 220449667 220449819 L1PA8 5853 - 0 150 154058 92 2 1 19 2 1 37 chain 8394 chr2 243199373 + 220453234 220453355 MER41C 542 - 380 531 168888 14 0 29 69 4 5 34 chain 6650 chr2 243199373 + 220454318 220454397 MER30 238 + 158 234 180086 41 3 0 35 chain 16262 chr2 243199373 + 220455467 220455679 7SK 245 - 5 218 137574 32 7 8 173 chain 6301 chr2 243199373 + 220470229 220470310 MER67A 545 - 463 544 182795 81 chain 22923 chr2 243199373 + 220511775 220512508 MSTA 426 + 0 426 115995 92 15 37 12 4 7 86 34 32 34 13 22 57 339 0 47 chain 40560 chr2 243199373 + 220516421 220516911 MER9a1 513 + 0 513 68496 228 16 39 246 chain 21758 chr2 243199373 + 220524752 220525068 THE1D 372 - 55 372 121178 102 35 39 15 0 1 28 4 0 132 chain 28248 chr2 243199373 + 220528566 220528907 THE1A 353 - 0 340 92122 243 1 0 97 chain 2676 chr2 243199373 + 220539239 220539309 MIRb 242 - 61 130 230461 16 28 27 26 chain 22952 chr2 243199373 + 220541690 220541974 AluSg7 307 - 15 298 115846 166 2 1 116 chain 24333 chr2 243199373 + 220548191 220548568 THE1B 368 + 0 368 108467 13 2 0 26 1 6 127 9 8 12 4 0 14 4 7 80 1 0 9 9 0 66 chain 10058 chr2 243199373 + 220552764 220552887 MER41B 635 - 510 633 160291 123 chain 16517 chr2 243199373 + 220558115 220558346 THE1B 368 - 130 368 136866 6 1 0 18 1 5 9 1 0 31 1 0 35 0 1 93 0 5 35 chain 23667 chr2 243199373 + 220565431 220565708 AluY 311 + 0 294 112213 54 0 17 223 chain 128022 chr2 243199373 + 220615258 220616743 SVA_B 1603 - 5 1597 28561 427 0 2 177 0 16 60 0 83 285 4 0 499 17 27 16 chain 34053 chr2 243199373 + 220629945 220630381 MER57A1 433 - 0 433 77537 146 12 8 63 0 1 215 chain 4590 chr2 243199373 + 220633602 220633655 MIRb 242 - 122 175 199739 53 chain 10319 chr2 243199373 + 220670988 220671151 L1MA2 4263 - 158 323 159033 47 7 0 40 0 11 42 9 7 18 chain 549947 chr2 243199373 + 220678230 220684380 L1PA4 6152 - 1 6152 1454 2212 0 1 1368 0 4 1476 0 3 47 1 0 9 0 1 454 1 0 116 6 0 460 chain 19706 chr2 243199373 + 220733969 220734249 THE1D 372 - 0 281 128074 147 1 0 25 32 34 75 chain 41818 chr2 243199373 + 220740839 220741378 MER41A 554 + 15 554 66869 72 10 11 332 0 1 33 4 0 51 0 2 37 chain 10419 chr2 243199373 + 220743662 220743803 L1PA8 5853 - 0 139 158600 93 1 0 19 6 5 22 chain 10436 chr2 243199373 + 220743803 220743933 MER41B 635 + 503 633 158545 130 chain 9554 chr2 243199373 + 220752277 220752504 MER53 195 - 13 195 162814 32 92 47 103 chain 15090 chr2 243199373 + 220795717 220795996 MSTB 430 - 127 414 141056 24 14 5 13 57 74 171 chain 553990 chr2 243199373 + 220796539 220802559 L1PA2 6032 + 0 6027 952 2015 0 1 509 0 1 133 0 4 113 0 1 3092 0 7 15 8 1 135 chain 5070 chr2 243199373 + 220816690 220816766 MADE1 96 - 2 94 194426 41 5 21 30 chain 27790 chr2 243199373 + 220817806 220818155 THE1B 368 + 7 368 93733 37 0 15 109 3 0 200 chain 8002 chr2 243199373 + 220828219 220828314 MER30 238 + 140 238 171044 50 0 3 45 chain 28691 chr2 243199373 + 220838913 220839291 THE1C 375 - 0 375 90360 26 1 0 166 1 2 56 3 0 125 chain 3422 chr2 243199373 + 220880530 220880851 THE1C 375 + 0 319 104067 125 3 0 58 1 2 5 1 0 57 2 3 69 chain 90623 chr2 243199373 + 220880868 220881866 L1PA4 6152 - 1070 2067 39415 199 1 0 798 chain 83731 chr2 243199373 + 220881866 220882815 L1PA4 6152 + 5175 6133 42025 427 3 12 519 chain 608 chr2 243199373 + 220882831 220882888 THE1C 375 + 319 375 104067 31 1 0 25 chain 31726 chr2 243199373 + 220919956 220920321 THE1A-int 1579 + 1214 1579 81286 365 chain 22789 chr2 243199373 + 220920321 220920655 THE1A 353 + 0 333 116635 13 3 1 34 0 1 45 1 0 15 26 27 197 chain 16210 chr2 243199373 + 220953114 220953293 L1PA5 6144 - 13 192 137717 179 chain 29813 chr2 243199373 + 220954100 220954592 MLT2A1 477 + 0 477 85399 84 1 0 4 0 1 28 1 0 4 5 6 13 0 1 18 10 14 92 6 7 113 4 0 35 32 16 21 1 0 20 chain 8356 chr2 243199373 + 220965242 220965340 L1PA6 6164 - 2 100 169095 98 chain 15814 chr2 243199373 + 221000742 221001084 Tigger4b 360 + 0 360 138915 20 9 10 78 16 37 20 36 34 78 25 30 9 7 0 44 chain 14194 chr2 243199373 + 221006616 221006840 L1MA7 2200 - 1833 2058 143900 33 7 6 29 15 16 52 0 1 30 0 1 10 1 0 47 chain 37714 chr2 243199373 + 221022403 221023031 LTR8 732 - 110 732 72535 40 1 16 10 19 4 10 25 17 77 1 0 4 1 2 81 1 0 55 7 1 46 1 2 52 5 4 43 6 5 112 0 9 16 0 1 15 chain 58540 chr2 243199373 + 221054363 221055040 L1PA7 6471 + 5791 6466 53678 668 2 0 7 chain 14706 chr2 243199373 + 221059068 221059436 MSTA 426 + 0 408 142254 61 14 12 35 5 29 62 0 1 5 130 147 56 chain 24941 chr2 243199373 + 221067756 221068136 THE1B 368 + 0 368 105102 82 15 1 86 1 0 30 0 1 15 27 29 124 chain 7887 chr2 243199373 + 221077207 221077316 UCON11 162 - 42 148 171761 10 3 0 96 chain 28950 chr2 243199373 + 221085207 221085593 MER57B1 401 - 16 401 89220 85 16 14 32 0 1 253 chain 20273 chr2 243199373 + 221090252 221090504 AluSc 308 - 50 303 126302 52 1 2 199 chain 10556 chr2 243199373 + 221101011 221101154 THE1D 372 + 229 372 158021 78 1 0 4 1 2 59 chain 8773 chr2 243199373 + 221105097 221105464 MSTD 398 - 0 393 166800 61 0 2 6 1 0 4 215 239 25 8 9 47 chain 9332 chr2 243199373 + 221114281 221114486 MSTB 430 + 164 374 163891 20 0 2 13 8 15 28 63 59 73 chain 17138 chr2 243199373 + 221118461 221118830 L1PB1 5432 + 5085 5424 135212 18 7 6 5 1 0 20 1 0 12 1 0 10 9 5 6 2 0 53 2 1 16 1 0 44 1 0 7 32 20 19 3 0 12 11 9 22 1 0 20 0 3 11 1 0 16 1 0 4 chain 25238 chr2 243199373 + 221135798 221136106 AluSc5 308 - 0 308 103551 308 chain 12403 chr2 243199373 + 221141135 221141288 LTR7Y 441 + 241 393 150625 29 1 0 123 chain 15333 chr2 243199373 + 221163178 221163416 MER4A1 472 - 126 377 140385 51 43 56 144 chain 107557 chr2 243199373 + 221224033 221225239 L1PA5 6144 - 982 2186 34835 281 1 0 655 1 0 268 chain 84787 chr2 243199373 + 221225239 221226214 L1PA5 6144 + 5170 6144 41529 817 2 0 5 1 3 52 1 0 97 chain 18920 chr2 243199373 + 221243921 221244196 L1MA2 4263 - 151 416 130316 7 1 0 47 7 0 93 11 9 109 chain 528528 chr2 243199373 + 221246939 221253064 L1PA5 6144 - 0 6144 4353 332 0 1 517 1 0 1420 0 2 371 0 1 493 0 1 692 2 1 886 1 0 257 9 0 439 0 2 5 6 4 549 0 12 9 0 14 136 chain 70777 chr2 243199373 + 221253072 221254108 L1MA2 4263 - 2892 3931 48024 60 0 1 110 11 12 65 0 1 71 2 1 22 14 15 299 3 4 138 6 8 47 38 35 120 8 4 15 0 4 7 chain 4476 chr2 243199373 + 221341760 221341811 MADE1 96 + 45 96 201051 51 chain 28869 chr2 243199373 + 221345937 221346242 AluYb8 318 + 0 305 89591 305 chain 42477 chr2 243199373 + 221361649 221362194 MLT2A2 560 - 0 560 66038 9 0 4 90 1 0 42 5 16 70 1 2 327 chain 29240 chr2 243199373 + 221401685 221402063 MLT2A1 477 - 92 477 87845 109 0 2 101 0 4 26 1 2 141 chain 439307 chr2 243199373 + 221402068 221407961 HERVL-int 5654 - 5 5654 9069 142 16 15 63 0 1 66 1 0 137 1 0 127 0 1 159 406 0 107 0 6 62 3 9 40 10 19 91 11 27 124 12 35 163 6 1 214 8 74 410 0 1 25 0 4 1001 4 6 786 0 4 243 3 13 159 0 1 105 0 1 124 0 1 275 0 1 74 0 1 54 16 17 272 0 14 39 0 1 334 chain 9468 chr2 243199373 + 221402824 221402947 HERVL-int 5654 - 757 886 163234 66 0 6 57 chain 14606 chr2 243199373 + 221402948 221403127 HERVL-int 5654 - 477 656 142563 179 chain 25549 chr2 243199373 + 221408127 221408461 MLT2A1 477 - 123 477 101997 140 0 1 34 12 17 21 0 1 78 0 13 49 chain 28146 chr2 243199373 + 221425957 221426304 L1PA6 6164 + 5812 6161 92471 103 7 9 237 chain 43396 chr2 243199373 + 221458743 221459300 MLT2A2 560 + 0 560 64943 13 0 6 145 10 7 389 chain 29497 chr2 243199373 + 221471588 221471966 THE1C 375 - 0 375 86648 250 3 0 125 chain 51768 chr2 243199373 + 221500071 221500677 L1PA7 6471 - 28 634 57775 606 chain 16861 chr2 243199373 + 221576065 221576411 THE1B 368 + 0 356 135937 41 51 52 79 2 1 19 50 60 104 chain 3951 chr2 243199373 + 221584650 221584715 MADE1 96 + 3 83 208118 26 6 21 33 chain 205966 chr2 243199373 + 221586631 221589566 L1PB1 5432 - 5 2934 18794 5 1 0 18 1 0 12 1 0 21 6 5 20 2 0 14 1 0 5 2 0 19 16 6 21 1 0 60 2 1 35 1 17 9 2 0 3 2 0 11 4 3 4 1 0 8 0 1 14 5 0 12 49 6 14 5 6 279 7 5 78 0 1 86 3 0 548 0 16 42 1 11 24 0 1 175 0 3 76 2 4 231 7 11 43 10 11 268 0 1 148 6 12 70 0 4 6 6 7 83 6 7 26 0 4 52 0 1 245 chain 15234 chr2 243199373 + 221607017 221607198 L1P1 4361 - 4064 4245 140674 181 chain 6776 chr2 243199373 + 221613602 221613685 L1P3b 214 + 44 127 179136 83 chain 68964 chr2 243199373 + 221615389 221616353 L1P3 4156 - 17 984 48826 23 1 0 9 2 0 270 5 4 61 12 13 76 10 11 45 12 19 88 2 1 25 1 0 322 chain 16583 chr2 243199373 + 221623431 221623612 L1PA4 6152 + 5856 6037 136706 181 chain 17343 chr2 243199373 + 221643640 221643953 L1PA16 3655 - 685 1006 134675 10 0 3 6 6 1 24 36 44 74 1 5 115 18 16 23 chain 3395 chr2 243199373 + 221646874 221646913 MER54B 801 + 2 41 217190 39 chain 224752 chr2 243199373 + 221692739 221695386 L1PA7 6471 + 3784 6461 17614 52 0 1 496 1 0 331 1 8 281 1 2 378 1 0 286 1 4 87 1 0 426 0 1 157 8 29 87 1 0 51 chain 10763 chr2 243199373 + 221729900 221730042 L1PA8 5853 + 5713 5853 157141 27 2 1 19 1 0 93 chain 10616 chr2 243199373 + 221733359 221733935 MER75 514 + 278 478 157748 26 19 37 17 18 0 30 1 2 46 377 0 42 chain 18805 chr2 243199373 + 221738171 221738530 THE1D 372 - 21 370 130663 44 0 1 5 1 0 62 45 51 23 7 0 29 1 5 60 31 18 51 chain 29083 chr2 243199373 + 221739596 221739903 AluYk12 309 + 0 307 88622 307 chain 4353 chr2 243199373 + 221753649 221753701 MLT2C2 476 + 424 476 202557 52 chain 15774 chr2 243199373 + 221804655 221804876 AluSc 308 + 56 283 139041 66 0 1 8 19 22 122 0 2 6 chain 34955 chr2 243199373 + 221825228 221825752 MER41C 542 - 0 542 76257 76 15 16 54 1 0 57 2 4 8 0 19 171 28 23 64 0 1 21 0 1 27 chain 6135 chr2 243199373 + 221836490 221836578 MLT1D 503 + 0 86 184124 21 1 0 60 1 0 5 chain 95603 chr2 243199373 + 221887038 221888332 L1PB 1623 - 215 1498 37933 98 9 1 138 2 0 185 0 1 57 0 4 81 0 1 17 8 7 56 0 1 241 5 6 28 2 1 82 2 1 133 1 0 77 3 1 4 1 0 20 4 1 16 0 1 24 chain 6575 chr2 243199373 + 221889559 221889634 L1PB 1623 - 1274 1349 180655 75 chain 3974 chr2 243199373 + 221889640 221889686 L1PB 1623 - 1354 1400 207775 46 chain 28986 chr2 243199373 + 221890743 221891047 AluYa5 310 - 6 310 89056 304 chain 93648 chr2 243199373 + 221891775 221892850 L1PA5 6144 + 5035 6127 38459 231 0 9 616 1 0 51 0 8 43 1 2 132 chain 4119 chr2 243199373 + 221917497 221917608 MLT1H1 527 + 11 123 205666 13 1 0 4 0 1 5 37 39 26 1 0 24 chain 24396 chr2 243199373 + 221921014 221921367 THE1A 353 - 0 353 108100 18 2 3 222 31 30 80 chain 109978 chr2 243199373 + 221921372 221922784 THE1A-int 1579 - 6 1578 34223 391 3 167 201 2 1 53 1 3 110 0 1 4 1 0 224 3 2 54 4 1 312 1 0 4 0 1 11 2 1 31 chain 43614 chr2 243199373 + 221951429 221952007 THE1D-int 1627 - 924 1627 64669 125 10 33 97 11 113 335 chain 64838 chr2 243199373 + 221955427 221956208 L1P1 4361 - 635 1430 50641 42 2 1 181 1 2 203 1 2 136 1 0 62 0 12 87 0 2 65 chain 32456 chr2 243199373 + 221956208 221956570 L1PA5 6144 + 5768 6130 80099 362 chain 30975 chr2 243199373 + 221964565 221964908 L1PA4 6152 - 18 361 82558 343 chain 4237 chr2 243199373 + 221999521 221999857 MLT1J1 437 + 43 371 204078 48 265 257 23 chain 9074 chr2 243199373 + 222000509 222000634 MER85 139 + 2 138 165195 90 4 15 31 chain 26757 chr2 243199373 + 222008663 222008960 AluYa5 310 - 1 298 97139 297 chain 22258 chr2 243199373 + 222030507 222030813 THE1C 375 + 61 364 119087 59 3 0 61 0 1 8 9 8 43 1 2 107 1 0 14 chain 49083 chr2 243199373 + 222055120 222055691 L1PA5 6144 + 5580 6144 59684 410 7 0 154 chain 18817 chr2 243199373 + 222107218 222107454 L1PA5 6144 + 5907 6144 130624 74 8 9 154 chain 11507 chr2 243199373 + 222121635 222121848 L1MA9 1812 + 728 943 154262 95 62 64 56 chain 60549 chr2 243199373 + 222121856 222122548 L1PA5 6144 + 5446 6139 52545 543 0 1 149 chain 3748 chr2 243199373 + 222127982 222128103 MER63B 433 + 309 423 211201 42 64 57 15 chain 30386 chr2 243199373 + 222191967 222192397 L1PA8 5853 + 5419 5853 83705 126 0 1 18 1 0 46 2 0 67 1 0 11 9 8 24 0 2 7 5 12 18 2 1 93 chain 28833 chr2 243199373 + 222207939 222208325 MLT2A1 477 - 83 475 89752 9 0 2 59 1 0 142 17 21 18 0 1 140 chain 11032 chr2 243199373 + 222244023 222244161 MER2 342 - 48 186 156084 138 chain 75245 chr2 243199373 + 222248111 222248926 L1PA2 6032 - 5 821 45900 348 0 1 467 chain 28547 chr2 243199373 + 222375933 222376389 MER57A1 433 + 0 421 90983 279 43 5 16 22 24 38 9 10 49 chain 11237 chr2 243199373 + 222412726 222412914 MSTB 430 + 0 187 155271 117 14 0 7 0 14 14 17 16 19 chain 12490 chr2 243199373 + 222441645 222441919 L1PB1 5432 - 8 260 150289 4 1 0 16 7 6 7 1 0 21 1 0 24 2 0 11 11 8 16 20 11 4 1 0 15 1 0 44 1 0 16 2 1 48 chain 7140 chr2 243199373 + 222466792 222466874 L1PA8 5853 + 5771 5853 176469 82 chain 16852 chr2 243199373 + 222517409 222517729 THE1B 368 + 0 348 135973 17 0 2 49 0 14 90 1 0 19 58 72 43 24 23 19 chain 28343 chr2 243199373 + 222529742 222530096 THE1B 368 - 0 368 91788 199 1 0 110 0 15 44 chain 27823 chr2 243199373 + 222600890 222601198 L1PA3long 6157 - 0 307 93621 205 1 0 102 chain 51763 chr2 243199373 + 222616224 222616865 L1PA8A 6298 + 5657 6290 57780 379 0 1 77 9 0 176 chain 27427 chr2 243199373 + 222647359 222647727 THE1C 375 + 0 364 94886 125 3 0 60 3 4 83 1 0 77 1 0 15 chain 6451 chr2 243199373 + 222693850 222693980 Tigger1 2417 - 2221 2355 181634 71 21 22 12 6 9 20 chain 30558 chr2 243199373 + 222725446 222725764 AluYb8 318 + 0 318 83297 318 chain 82509 chr2 243199373 + 222734988 222736467 L1PA10 4194 + 1275 2452 42533 84 306 0 94 7 8 163 4 1 32 20 19 44 7 9 30 2 0 6 0 2 160 0 1 4 1 0 72 16 13 5 0 3 130 0 4 90 0 1 202 chain 5810 chr2 243199373 + 222739973 222740041 MER1B 344 + 276 344 187043 68 chain 131218 chr2 243199373 + 222756211 222757767 SVA_D 2077 + 4 2077 27812 100 0 27 430 4 40 124 0 3 33 3 0 3 1 0 79 37 0 60 0 86 26 1 405 18 1 2 45 0 1 591 chain 45580 chr2 243199373 + 222766586 222767135 L1PA8A 6298 - 7 548 62429 105 0 1 64 9 0 371 chain 9551 chr2 243199373 + 222796779 222796919 L1PA8 5853 + 5715 5853 162825 25 2 1 14 6 5 93 chain 16466 chr2 243199373 + 222805776 222806103 MLT2D 439 + 0 291 137024 95 1 0 91 103 68 37 chain 3740 chr2 243199373 + 222829282 222829324 THE1A 353 - 311 353 211328 42 chain 556410 chr2 243199373 + 222849284 222855305 L1PA2 6032 + 3 6028 684 182 0 1 935 1 0 4061 0 4 842 chain 163093 chr2 243199373 + 222866310 222868121 L1PA4 6152 + 4327 6143 22930 973 0 5 838 chain 6345 chr2 243199373 + 222870011 222870274 L1MC1 2226 - 662 921 182424 20 154 151 48 4 3 37 chain 9235 chr2 243199373 + 222888030 222888154 MER85 139 + 5 139 164376 81 5 15 38 chain 43490 chr2 243199373 + 222896851 222897387 L1PA7 6471 - 3 539 64827 9 2 0 99 0 2 43 1 0 6 10 11 366 chain 6740 chr2 243199373 + 222906131 222906254 MER20 218 - 66 177 179395 63 30 18 30 chain 10799 chr2 243199373 + 222916446 222916574 L1PA5 6144 + 6006 6132 156994 72 2 0 54 chain 20606 chr2 243199373 + 222918778 222919068 L1PA8 5853 - 0 284 125273 93 1 0 16 1 0 51 6 5 9 1 0 69 2 0 41 chain 15331 chr2 243199373 + 222919068 222919239 L1PA8 5853 + 5392 5563 140389 171 chain 14099 chr2 243199373 + 222940024 222940227 THE1B 368 - 172 368 144226 4 1 0 19 12 11 59 6 0 87 0 1 15 chain 29315 chr2 243199373 + 222949407 222949717 AluYb8 318 - 8 318 87468 310 chain 6131 chr2 243199373 + 222951907 222951986 L1ME1 1623 + 1260 1339 184158 79 chain 53793 chr2 243199373 + 222959354 222959962 L1PA4 6152 - 1 609 56480 608 chain 32917 chr2 243199373 + 222983998 222984431 L1PA8 5853 - 0 429 79342 93 1 0 19 3 2 40 1 2 4 1 0 12 1 0 26 0 1 46 2 0 46 1 0 40 0 1 97 chain 176313 chr2 243199373 + 223011916 223013923 L1PA5 6144 + 4137 6141 21326 1824 0 1 105 0 2 5 2 0 61 4 0 6 chain 560327 chr2 243199373 + 223014320 223020351 L1PA2 6032 - 0 6031 335 6031 chain 5642 chr2 243199373 + 223034782 223034851 LTR12F 595 - 117 184 188639 31 2 0 36 chain 24652 chr2 243199373 + 223035887 223036255 THE1C 375 + 0 375 106713 168 2 0 25 8 9 92 34 43 13 1 0 25 chain 5730 chr2 243199373 + 223046928 223047130 MER8 282 + 0 282 187832 65 14 58 13 93 129 17 chain 28157 chr2 243199373 + 223094961 223095281 L1PA7 6471 + 6140 6459 92436 260 1 0 59 chain 65001 chr2 243199373 + 223115824 223116570 L1PA4 6152 - 0 741 50574 350 8 3 388 chain 20690 chr2 243199373 + 223130107 223130368 AluY 311 + 17 293 125001 117 0 1 108 0 12 22 1 3 13 chain 8444 chr2 243199373 + 223142689 223142804 MER30 238 + 125 235 168600 30 2 0 37 3 0 43 chain 12161 chr2 243199373 + 223188304 223188466 Tigger4b 360 + 175 351 151569 65 0 5 51 0 9 46 chain 15457 chr2 243199373 + 223207456 223207669 Tigger2a 444 + 170 444 140031 86 1 6 5 5 0 108 0 61 8 chain 21128 chr2 243199373 + 223230728 223230980 L1PA6 6164 - 2 254 123456 252 chain 206765 chr2 243199373 + 223230997 223233603 L1P2 5180 - 2582 5178 18734 237 0 1 137 0 2 12 0 2 67 23 6 118 12 13 170 0 1 331 0 2 49 1 0 656 2 1 6 1 0 62 12 12 36 0 1 113 1 0 48 0 1 271 1 0 6 0 2 35 7 6 43 2 1 107 0 1 40 chain 92411 chr2 243199373 + 223239088 223240191 L1PA7 6471 - 6 1117 38841 151 0 1 7 2 1 505 0 1 68 0 3 106 2 0 67 0 4 99 0 1 51 0 1 45 chain 19921 chr2 243199373 + 223244691 223245165 L1MA3 4352 + 3933 4352 127396 33 8 0 14 35 19 47 84 60 5 0 3 65 1 0 79 2 0 24 15 13 19 1 0 11 9 5 22 chain 16360 chr2 243199373 + 223271450 223271808 THE1B 368 + 0 368 137311 15 1 0 14 0 5 61 26 28 51 64 70 62 25 23 39 chain 71463 chr2 243199373 + 223277183 223277984 L1PA5 6144 - 268 1069 47710 801 chain 196414 chr2 243199373 + 223278283 223280890 MER4-int 2692 + 74 2672 19471 25 2 0 8 1 0 18 0 2 166 0 1 214 0 2 248 3 10 71 0 1 78 0 1 18 1 2 424 0 40 74 16 16 19 5 0 32 1 0 48 48 0 183 3 4 86 1 0 25 0 2 57 15 0 327 3 0 8 2 4 97 0 3 104 0 4 176 chain 32194 chr2 243199373 + 223299782 223300198 MLT2A1 477 - 64 477 80530 16 4 0 14 0 1 144 0 1 38 0 1 18 0 1 9 4 1 169 chain 323981 chr2 243199373 + 223300198 223304067 HERVL-int 5654 - 0 3915 12440 281 0 1 91 7 17 208 16 27 624 0 1 207 0 4 386 0 3 19 1 2 1690 0 6 6 1 10 332 chain 30655 chr2 243199373 + 223326089 223326560 MER1A 529 - 0 525 83110 54 18 17 78 6 0 226 23 63 25 0 9 8 8 20 25 chain 36569 chr2 243199373 + 223334533 223335000 L1PA8 5853 + 5395 5853 74140 4 1 0 165 1 0 46 2 0 72 1 0 6 3 1 51 2 1 19 1 0 93 chain 4791 chr2 243199373 + 223336894 223336950 MLT1D 503 - 0 56 197455 56 chain 10413 chr2 243199373 + 223344441 223344570 MER85 139 + 0 139 158629 99 0 10 30 chain 5371 chr2 243199373 + 223363016 223363088 U6 107 + 7 78 191293 23 1 0 48 chain 43381 chr2 243199373 + 223384408 223385054 L1PA16 3655 - 77 709 64955 145 0 1 140 9 7 66 17 15 177 8 7 40 25 15 19 chain 29079 chr2 243199373 + 223391348 223391689 L1PA8A 6298 + 5941 6289 88649 86 0 5 167 0 1 14 0 1 74 chain 37281 chr2 243199373 + 223416620 223417156 L1PB1 5432 - 156 682 73113 40 16 14 55 2 0 8 27 21 24 3 0 6 2 5 353 chain 7931 chr2 243199373 + 223447716 223447811 L1PA8 5853 + 5578 5671 171436 30 2 0 63 chain 5819 chr2 243199373 + 223448218 223448311 L1MC4 1079 + 735 828 186951 32 1 0 29 1 3 25 1 0 4 chain 522353 chr2 243199373 + 223449096 223455243 L1PA5 6144 + 2 6144 4922 110 16 30 810 25 0 217 9 0 73 0 3 127 0 7 228 0 1 95 1 0 23 0 4 464 0 2 164 0 2 872 0 1 38 7 6 403 2 0 495 2 3 540 3 1 662 1 0 613 0 1 26 1 0 102 1 0 5 1 3 11 chain 22703 chr2 243199373 + 223481024 223481286 AluSc 308 + 39 301 117059 262 chain 26513 chr2 243199373 + 223481701 223481980 AluYb8 318 - 1 280 98002 279 chain 23191 chr2 243199373 + 223483587 223483874 AluYa5 310 + 14 295 114722 38 7 3 9 2 0 231 chain 3733 chr2 243199373 + 223522829 223522874 MIRb 242 + 99 144 211412 45 chain 54599 chr2 243199373 + 223560505 223561357 L1PB1 5432 - 10 827 55966 18 1 0 12 1 0 22 1 0 23 26 21 18 19 8 4 1 0 16 1 0 12 1 0 32 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 8 1 0 22 19 11 20 0 4 171 7 9 253 0 2 23 3 0 16 chain 38358 chr2 243199373 + 223569609 223570115 MER41A 554 - 0 532 71634 81 0 5 66 5 23 84 0 1 73 6 8 191 chain 17335 chr2 243199373 + 223573812 223574047 AluSz6 309 + 63 290 134696 65 5 0 46 4 1 115 chain 109764 chr2 243199373 + 223584851 223586350 THE1B-int 1605 - 11 1605 34267 193 1 2 98 26 22 98 9 8 178 2 5 9 1 12 186 1 2 24 4 13 62 1 0 221 0 64 24 0 2 92 0 6 29 0 3 214 13 14 13 chain 27327 chr2 243199373 + 223623693 223624047 THE1C 375 - 0 375 95186 171 0 3 14 0 1 36 0 20 8 3 0 122 chain 25864 chr2 243199373 + 223634155 223634568 LTR43 600 + 174 593 100589 11 5 1 30 13 7 132 23 35 36 1 2 18 2 0 20 2 7 120 chain 32554 chr2 243199373 + 223635493 223635937 L1PB2 3958 - 150 584 79938 32 8 7 90 1 0 62 1 0 78 1 0 88 8 4 8 2 0 65 chain 4063 chr2 243199373 + 223644049 223644100 MADE1 96 + 1 69 206435 35 0 17 16 chain 6009 chr2 243199373 + 223657819 223657898 MADE1 96 - 0 96 185145 7 0 1 43 0 16 29 chain 130006 chr2 243199373 + 223680437 223682082 SVA_F 1814 + 9 1565 28087 46 3 127 174 0 1 531 1 0 60 224 14 215 2 0 10 1 0 378 chain 16299 chr2 243199373 + 223681255 223681474 SVA_F 1814 + 966 1185 93578 74 6 6 139 chain 9829 chr2 243199373 + 223705451 223705584 L1PA8 5853 - 0 131 161452 91 1 0 20 4 3 17 chain 4194 chr2 243199373 + 223709233 223709316 MER5A1 166 - 1 81 204640 24 21 18 38 chain 2128 chr2 243199373 + 223710945 223710967 MER5A1 166 - 79 101 237410 22 chain 29931 chr2 243199373 + 223712638 223713098 LTR7B 505 - 2 505 85020 49 14 13 52 0 1 23 1 0 45 1 2 38 29 0 28 15 77 57 0 10 108 chain 9060 chr2 243199373 + 223747122 223747267 MER1B 344 - 9 144 165259 24 2 1 34 18 9 67 chain 21872 chr2 243199373 + 223750784 223751145 L1PA8 5853 - 0 347 120742 44 26 21 28 4 0 19 2 1 40 0 2 8 1 0 11 2 1 65 16 13 36 1 0 58 chain 162439 chr2 243199373 + 223760197 223762628 SVA_E 1901 - 0 1900 23007 646 92 0 88 49 0 67 467 43 4 0 1 43 4 5 77 4 0 91 2 0 19 1 0 118 0 40 514 1 0 144 chain 4882 chr2 243199373 + 223760865 223760935 SVA_E 1901 - 746 773 117914 7 1 2 14 44 0 4 chain 3194 chr2 243199373 + 223760887 223760931 SVA_E 1901 - 944 1017 128804 26 17 46 1 chain 3417 chr2 243199373 + 223761023 223761072 SVA_E 1901 - 860 909 117914 49 chain 3417 chr2 243199373 + 223761139 223761188 SVA_E 1901 - 1050 1097 117914 34 1 0 5 1 0 8 chain 28529 chr2 243199373 + 223761205 223761590 SVA_F 1814 - 595 967 91055 4 0 1 37 0 1 44 1 0 170 45 33 4 1 0 33 1 0 4 0 1 32 1 0 8 chain 4145 chr2 243199373 + 223761461 223761506 SVA_F 1814 - 725 771 109072 7 0 1 38 chain 25425 chr2 243199373 + 223775763 223776062 AluSp 311 - 8 307 102571 299 chain 27420 chr2 243199373 + 223826431 223826780 THE1A 353 + 0 353 94907 110 1 0 92 1 0 25 2 8 118 chain 128196 chr2 243199373 + 223826780 223828313 THE1A-int 1579 + 0 1579 28524 444 0 12 312 0 32 29 0 1 218 0 1 530 chain 16965 chr2 243199373 + 223829548 223830208 THE1B 368 - 6 361 135683 33 335 23 63 11 19 10 0 1 4 30 25 6 0 2 38 29 30 101 chain 115838 chr2 243199373 + 223853127 223855009 THE1B-int 1605 - 7 1605 32518 48 329 21 128 1 2 736 38 33 73 1 0 98 2 27 256 0 2 129 6 8 37 chain 22340 chr2 243199373 + 223855020 223855365 THE1B 368 - 11 366 118744 50 0 2 27 18 16 70 8 0 23 1 0 27 7 11 72 0 15 42 chain 3887 chr2 243199373 + 223855448 223855495 MLT1A0 366 - 319 366 209068 47 chain 481300 chr2 243199373 + 223877305 223882732 L1PA5 6144 + 707 6144 7681 230 0 1 71 0 1 334 0 1 1831 1 0 1165 0 4 946 0 4 849 chain 32133 chr2 243199373 + 223904064 223904408 L1HS 6032 + 5688 6032 80635 344 chain 6659 chr2 243199373 + 223923500 223923620 L1PB1 5432 + 5308 5420 180010 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 13189 chr2 243199373 + 223940473 223940647 MSTA 426 + 232 426 147510 64 1 21 109 chain 34848 chr2 243199373 + 224000000 224000384 L1PA4 6152 + 5753 6136 76409 138 2 1 244 chain 38722 chr2 243199373 + 224034059 224034501 L1PA5 6144 + 5689 6132 71120 121 0 1 321 chain 40191 chr2 243199373 + 224036851 224037316 L1PA4 6152 - 0 469 69041 6 0 5 249 1 0 209 chain 21132 chr2 243199373 + 224042964 224043196 L1PA2 6032 - 0 232 123438 232 chain 23246 chr2 243199373 + 224053497 224053840 LTR7 482 - 8 482 114460 150 3 12 4 0 1 10 2 33 39 0 1 60 21 110 54 chain 322072 chr2 243199373 + 224055098 224059817 HERVH-int 3825 - 0 3825 12521 125 6 0 3 929 0 2611 4 5 301 0 1 13 0 2 8 0 2 57 44 1 24 25 93 9 1 0 39 6 1 197 1 0 27 0 17 289 chain 78062 chr2 243199373 + 224055238 224056161 LTR5_Hs 974 + 0 974 44486 47 0 3 25 0 41 703 8 15 140 chain 23976 chr2 243199373 + 224059828 224060223 LTR7 482 - 9 482 110471 149 0 10 50 8 40 43 53 0 17 7 96 68 chain 104738 chr2 243199373 + 224062572 224063808 L1PA7 6471 + 5234 6470 35560 268 0 1 121 0 1 5 2 4 674 11 8 108 1 2 39 2 0 5 chain 37086 chr2 243199373 + 224068135 224068588 LTR2 463 + 0 458 73404 61 0 3 205 0 1 92 12 13 83 chain 13665 chr2 243199373 + 224073879 224074073 L1PA5 6144 + 5945 6144 145723 44 1 8 9 7 0 121 1 6 11 chain 2756 chr2 243199373 + 224078393 224078422 MLT2B1 522 - 10 39 229385 29 chain 8672 chr2 243199373 + 224102883 224102993 L1PA8 5853 - 0 109 167348 93 1 0 16 chain 274716 chr2 243199373 + 224106860 224110634 L1PA11 4918 - 369 4099 14939 15 5 1 13 8 3 9 4 0 19 1 0 17 2 0 51 24 22 4 1 0 19 1 0 17 5 5 112 0 8 82 1 3 33 0 12 414 1 0 296 1 0 20 0 1 423 2 3 57 7 7 145 0 1 103 1 0 94 1 2 14 0 1 54 0 1 39 8 9 184 1 2 38 2 0 381 3 0 347 10 8 14 4 0 6 3 0 240 1 0 262 66 30 89 chain 223554 chr2 243199373 + 224121469 224124267 L1P2 5180 - 2393 5178 17680 79 1 0 376 21 5 55 0 1 95 1 0 140 0 1 270 0 2 174 3 6 510 6 7 273 1 0 6 1 0 224 1 0 47 0 1 263 6 5 10 0 2 30 1 0 10 2 1 192 chain 523558 chr2 243199373 + 224152324 224158800 L1PA7 6471 - 23 6471 4805 800 28 27 44 0 7 260 0 5 282 7 1 7 31 0 884 0 1 571 6 10 648 3 4 50 26 14 164 5 3 5 0 2 11 10 7 140 0 12 346 0 1 303 7 6 198 0 2 79 18 0 34 1 0 276 0 1 134 1 0 426 1 12 267 0 1 403 chain 409941 chr2 243199373 + 224161190 224167110 HERVL-int 5654 + 0 5654 9803 47 18 11 418 12 13 186 0 1 229 2 4 119 1 0 186 1 0 500 1 0 49 9 0 112 0 3 36 0 1 120 4 8 41 13 11 97 28 35 396 0 1 372 5 7 1024 6 13 34 0 1 5 0 1 69 13 14 392 24 39 13 8 9 198 0 1 402 15 16 38 1 4 36 46 53 59 315 7 73 76 79 71 chain 24369 chr2 243199373 + 224173570 224173864 AluSg7 307 - 10 305 108270 170 0 1 124 chain 155592 chr2 243199373 + 224186744 224188481 L1PA4 6152 + 4408 6151 23912 537 1 0 359 0 5 508 1 2 327 0 1 4 chain 514560 chr2 243199373 + 224195232 224201371 L1PA6 6164 + 0 6155 5719 165 30 31 4 1 0 589 1 18 560 1 2 965 1 0 666 2 0 396 1 0 260 4 0 275 2 1 4 0 1 217 0 1 32 0 1 139 0 1 4 1 0 375 0 1 251 1 0 324 0 1 567 0 1 162 1 2 91 9 10 38 chain 96929 chr2 243199373 + 224208427 224209530 L1PA5 6144 - 932 2037 37575 930 0 2 173 chain 81226 chr2 243199373 + 224209530 224210452 L1PA5 6144 + 5209 6134 43037 603 0 2 187 0 1 132 chain 34723 chr2 243199373 + 224219834 224220226 L1PA4 6152 - 548 940 76583 392 chain 41481 chr2 243199373 + 224220233 224220698 L1PA4 6152 + 5677 6141 67305 221 1 0 243 chain 27326 chr2 243199373 + 224237210 224237584 THE1C 375 + 0 375 95189 125 3 0 43 0 1 15 2 3 16 14 17 130 1 0 25 chain 22844 chr2 243199373 + 224269970 224270318 THE1D 372 + 2 332 116374 74 46 27 77 0 1 7 3 1 102 0 2 39 chain 50042 chr2 243199373 + 224270318 224270905 L1PA6 6164 + 5417 6004 58991 587 chain 13460 chr2 243199373 + 224270906 224271056 L1PA6 6164 + 6006 6156 146486 150 chain 43215 chr2 243199373 + 224282348 224282811 L1PA2 6032 - 5 468 65154 463 chain 14232 chr2 243199373 + 224282811 224282966 L1PA2 6032 + 5405 5560 143786 155 chain 13521 chr2 243199373 + 224290405 224290726 L1PB1 5432 - 24 318 146277 4 1 0 11 1 0 23 1 0 16 0 3 6 27 19 18 25 14 14 1 0 5 0 3 36 1 0 15 2 1 42 28 22 12 1 0 11 1 0 19 chain 91475 chr2 243199373 + 224291941 224293288 L1PB 1623 - 170 1507 39146 7 1 0 141 1 0 745 1 0 68 8 7 82 1 0 47 19 20 63 5 4 45 96 91 17 chain 22524 chr2 243199373 + 224326783 224327073 MSTA-int 1630 + 0 286 117919 75 5 1 210 chain 23970 chr2 243199373 + 224327082 224327506 LTR7C 471 + 0 456 110511 71 12 30 43 0 13 64 1 0 119 78 79 21 0 1 15 chain 13451 chr2 243199373 + 224335553 224335875 MER66B 489 - 60 389 146527 30 62 69 10 1 0 32 1 0 90 41 0 8 5 46 25 1 3 16 chain 9081 chr2 243199373 + 224342758 224342880 MSTA 426 - 263 419 165156 30 2 23 75 0 13 15 chain 21798 chr2 243199373 + 224345911 224346206 THE1B 368 + 0 310 121027 174 1 0 25 0 1 10 0 4 6 7 20 63 2 0 7 chain 67386 chr2 243199373 + 224346946 224347695 L1PA5 6144 + 5395 6144 49492 749 chain 19921 chr2 243199373 + 224361179 224361502 THE1D 372 + 48 372 127397 26 3 0 6 5 9 77 6 10 15 19 17 17 1 0 6 1 0 141 chain 2710 chr2 243199373 + 224367425 224367477 MIR 256 + 81 134 230092 11 10 11 31 chain 26102 chr2 243199373 + 224368994 224369294 L1PA6 6164 + 5859 6159 99610 300 chain 5626 chr2 243199373 + 224372450 224372512 L1PA6 6164 + 6093 6155 188815 62 chain 19174 chr2 243199373 + 224392348 224392557 L1PA4 6152 + 5770 5979 129602 209 chain 2655 chr2 243199373 + 224399658 224399702 MADE1 96 + 1 46 230944 29 4 5 11 chain 3352 chr2 243199373 + 224409934 224409982 MER3 215 - 17 76 218008 17 1 12 30 chain 23005 chr2 243199373 + 224421395 224421686 AluSc 308 + 4 294 115597 253 2 1 36 chain 23235 chr2 243199373 + 224456996 224457250 L1PA4 6152 - 9 263 114520 254 chain 38489 chr2 243199373 + 224457260 224457691 L1PA4 6152 + 5468 5899 71452 431 chain 30399 chr2 243199373 + 224457942 224458362 MLT2A1 477 - 13 477 83684 45 0 36 24 4 14 138 2 4 33 5 2 56 6 5 107 chain 21500 chr2 243199373 + 224473114 224473338 AluYb8 318 + 85 309 122149 224 chain 12997 chr2 243199373 + 224489427 224489721 L1PB1 5432 - 53 318 148259 9 1 0 24 2 0 14 8 5 19 19 8 4 1 0 16 1 0 43 7 6 9 1 0 52 3 1 10 21 16 5 1 0 24 chain 43201 chr2 243199373 + 224495878 224496361 L1PA4 6152 + 5664 6146 65170 21 1 0 461 chain 21957 chr2 243199373 + 224504950 224505311 THE1B 368 - 0 368 120398 119 13 21 14 29 31 14 1 0 104 21 20 15 1 0 30 chain 30651 chr2 243199373 + 224513126 224513473 L1PA4 6152 + 5796 6143 83116 347 chain 309582 chr2 243199373 + 224523466 224528528 L1PB1 5432 + 811 5411 13019 92 4 6 424 9 11 35 33 33 186 0 1 117 0 27 750 3 0 69 712 268 174 20 25 28 6 5 96 7 6 42 0 11 82 0 1 301 22 23 785 0 2 121 1 2 92 3 0 136 5 1 25 6 14 292 56 20 24 39 30 52 2 1 10 6 5 39 7 6 15 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 7 chain 28747 chr2 243199373 + 224536278 224536632 THE1A 353 + 0 353 90137 110 1 0 243 chain 10654 chr2 243199373 + 224537676 224537804 MSTB 430 - 286 414 157587 128 chain 5547 chr2 243199373 + 224551159 224551242 MER2 342 + 159 246 189590 59 6 10 18 chain 43294 chr2 243199373 + 224584515 224585263 LTR8 732 - 0 701 65059 13 0 1 105 67 0 27 61 60 178 16 43 143 0 6 14 13 6 94 6 0 11 chain 27297 chr2 243199373 + 224603941 224604292 THE1A 353 - 0 353 95283 52 0 1 102 1 0 118 1 2 66 0 1 11 chain 21232 chr2 243199373 + 224630932 224631179 L1PA7 6471 - 784 1033 122813 71 0 2 176 chain 61013 chr2 243199373 + 224631179 224631898 L1PA7 6471 + 5718 6459 52323 27 1 0 223 0 1 353 1 23 114 chain 28594 chr2 243199373 + 224634453 224634760 AluYf4 310 - 3 310 90766 307 chain 160279 chr2 243199373 + 224655515 224657872 L1PA11 4918 + 2297 4578 23296 86 0 1 114 40 32 136 0 1 40 25 18 306 0 1 164 1 2 153 19 20 91 0 32 81 0 1 181 0 6 21 45 0 47 0 1 83 43 4 89 0 1 42 0 1 52 8 10 76 1 3 136 2 0 5 9 1 6 0 2 50 2 1 12 1 0 66 2 0 16 1 0 10 53 41 15 1 0 14 2 0 10 chain 5879 chr2 243199373 + 224693488 224693905 MER45A 178 + 68 178 186385 37 333 26 47 chain 3401 chr2 243199373 + 224694664 224694708 MER58A 224 + 165 207 217066 37 2 0 5 chain 53563 chr2 243199373 + 224711961 224712732 MER4E1 777 - 7 777 56637 68 4 3 50 10 4 17 7 8 69 1 0 9 15 28 105 3 10 82 28 14 303 chain 120677 chr2 243199373 + 224714399 224715929 THE1B-int 1605 + 0 1587 30806 129 0 35 150 4 6 40 8 7 63 0 25 43 5 0 190 11 12 887 chain 18440 chr2 243199373 + 224715946 224716316 THE1B 368 + 0 368 131674 108 118 118 4 1 0 10 1 0 128 chain 40232 chr2 243199373 + 224737544 224738008 L1PA7 6471 + 5995 6459 68979 464 chain 29557 chr2 243199373 + 224807244 224807551 AluYb9 318 - 11 318 86394 307 chain 5438 chr2 243199373 + 224823381 224823443 MER2 342 + 184 246 190621 62 chain 32578 chr2 243199373 + 224865250 224865682 L1PA8 5853 - 1 431 79890 91 2 1 19 2 1 51 1 0 10 2 1 70 2 0 21 1 5 20 1 0 24 0 1 115 chain 9340 chr2 243199373 + 224880737 224880924 L1MD2 1676 + 934 1118 163850 40 3 0 25 34 39 29 3 0 3 1 0 43 1 0 5 chain 14937 chr2 243199373 + 224901146 224901364 L1PA7 6471 + 6258 6469 141515 49 3 1 11 7 3 36 0 4 93 3 0 9 2 0 5 chain 24338 chr2 243199373 + 224923509 224923856 THE1B 368 - 12 368 108434 113 35 45 29 1 0 169 chain 23829 chr2 243199373 + 224940809 224941223 MSTA 426 + 0 426 111312 21 12 13 113 4 9 48 9 8 33 9 12 11 0 1 47 33 36 74 chain 277773 chr2 243199373 + 224954045 224957822 HERVH-int 3825 - 0 3825 14760 29 3 0 494 1 0 18 52 54 210 5 4 189 0 4 312 4 5 208 0 1 517 0 1 308 0 1 38 9 0 91 0 10 105 15 0 142 13 14 291 1 0 31 9 9 17 18 79 13 79 72 12 0 1 10 1 0 45 14 17 12 6 4 76 15 16 32 1 0 51 3 1 54 15 19 208 chain 28331 chr2 243199373 + 224957830 224958232 LTR7 482 - 6 482 91831 43 13 14 111 0 1 46 18 40 70 0 50 101 chain 31958 chr2 243199373 + 224963552 224964009 MER75 514 + 39 496 80924 45 47 46 5 0 1 5 0 1 44 1 0 310 chain 28554 chr2 243199373 + 224964009 224964316 AluYb8 318 - 0 307 90940 307 chain 9691 chr2 243199373 + 224986448 224986804 MSTB2 466 - 18 431 162138 56 149 201 13 60 65 78 chain 47419 chr2 243199373 + 224994590 224995136 L1PA6 6164 + 5613 6156 60885 308 1 0 131 2 0 104 chain 17503 chr2 243199373 + 225002998 225003336 MSTA 426 - 12 361 134256 143 71 77 24 9 13 44 13 14 34 chain 2838 chr2 243199373 + 225011483 225011513 LTR29 598 - 432 462 228101 30 chain 10189 chr2 243199373 + 225052055 225052186 MLT1A0 366 - 16 158 159680 115 0 11 16 chain 47623 chr2 243199373 + 225063580 225064169 LTR10C 591 + 0 591 60753 45 1 0 465 0 1 4 0 1 4 9 10 61 chain 3106 chr2 243199373 + 225065312 225065360 MER45A 178 + 131 178 222835 21 2 1 25 chain 30448 chr2 243199373 + 225080411 225080852 LTR7 482 - 9 482 83535 40 13 14 113 0 1 10 11 41 29 0 1 109 15 14 101 chain 11216 chr2 243199373 + 225084160 225084320 MER61A 341 + 0 162 155366 21 1 0 35 8 11 95 chain 28473 chr2 243199373 + 225090047 225090445 LTR7 482 + 0 482 91293 54 23 61 109 0 1 39 0 31 16 0 13 41 1 2 115 chain 295494 chr2 243199373 + 225090447 225094045 HERVH-int 3825 + 0 3825 13673 336 1 0 194 1 0 11 1 0 4 0 1 26 1 0 8 1 0 7 29 17 7 0 38 35 2 0 13 1 0 22 21 0 59 0 1 447 15 0 290 3 0 169 4 31 290 0 4 290 1 2 753 24 26 39 8 218 15 6 0 5 3 9 231 0 2 225 chain 25428 chr2 243199373 + 225095303 225095691 LTR7 482 + 0 470 102552 54 23 61 109 0 1 25 0 30 35 1 11 39 1 2 52 12 14 37 chain 5879 chr2 243199373 + 225104188 225104268 MADE1 96 + 0 96 186375 28 1 17 51 chain 22701 chr2 243199373 + 225104745 225105033 AluY 311 + 0 297 117067 45 6 12 73 0 3 164 chain 6819 chr2 243199373 + 225120000 225120113 Ricksha_0 1343 + 12 120 178809 25 18 13 70 chain 5135 chr2 243199373 + 225130021 225130078 L1PA6 6164 - 2 59 193733 57 chain 19544 chr2 243199373 + 225130078 225130313 L1PA6 6164 + 5854 6088 128531 57 1 0 177 chain 28812 chr2 243199373 + 225161349 225161760 LTR7 482 + 0 482 89831 68 9 47 109 0 1 14 32 64 179 chain 294091 chr2 243199373 + 225161762 225165425 HERVH-int 3825 + 0 3825 13761 95 1 2 433 1 0 11 1 0 4 0 1 23 27 0 8 19 72 29 88 0 5 2 0 14 1 0 14 21 0 67 1 0 120 0 1 616 4 1 169 4 31 290 0 4 293 0 1 169 1 6 591 9 11 39 8 218 260 0 2 225 chain 24689 chr2 243199373 + 225166669 225167071 LTR7 482 + 0 473 106502 69 29 17 15 15 14 17 2 53 39 0 1 14 1 32 18 5 6 178 chain 43743 chr2 243199373 + 225168192 225168733 MER41A 554 - 12 554 64513 448 0 1 93 chain 4950 chr2 243199373 + 225182482 225182537 L1PA5 6144 - 248 303 195702 55 chain 19719 chr2 243199373 + 225182537 225182761 L1PA5 6144 + 5901 6125 128043 224 chain 4716 chr2 243199373 + 225184163 225184221 MER45C 884 + 71 129 198330 58 chain 43501 chr2 243199373 + 225241911 225242463 MLT2A2 560 + 0 560 64812 295 0 1 103 3 14 103 5 1 43 chain 3115 chr2 243199373 + 225257698 225257769 MER3 215 - 25 198 222644 14 20 122 37 chain 32776 chr2 243199373 + 225262163 225262570 THE1B-int 1605 + 0 410 79571 25 3 0 5 3 6 77 0 3 294 chain 3066 chr2 243199373 + 225273677 225273710 L1MA4 2864 + 2773 2806 223634 33 chain 25360 chr2 243199373 + 225290323 225290683 THE1B 368 + 0 368 102887 44 0 15 42 4 2 69 3 2 22 8 0 110 0 4 58 chain 26941 chr2 243199373 + 225299520 225299897 MER51B 395 + 0 395 96483 6 0 3 33 12 0 203 1 0 5 6 7 87 0 27 24 chain 18161 chr2 243199373 + 225322154 225322485 THE1B 368 - 0 368 132437 102 2 0 74 28 23 34 63 107 28 chain 319272 chr2 243199373 + 225349553 225353666 L1P3 4156 + 1 4139 12626 241 37 51 28 1 0 206 4 0 171 3 16 132 13 14 62 1 6 8 5 0 57 1 0 6 1 2 248 1 0 279 11 8 513 0 4 86 3 0 318 0 1 160 25 12 39 0 26 111 13 12 106 1 0 19 0 10 486 0 3 15 21 1 17 1 0 4 20 15 43 0 1 9 1 0 24 1 6 229 0 4 297 2 0 7 2 1 24 chain 32319 chr2 243199373 + 225354881 225355306 LTR13 1007 + 541 977 80335 87 2 1 58 1 0 7 6 7 131 0 4 24 0 1 47 0 5 54 0 1 4 0 1 4 chain 20848 chr2 243199373 + 225387300 225387551 AluY 311 + 38 289 124469 85 1 0 40 0 1 125 chain 14648 chr2 243199373 + 225405437 225405616 L1PA8A 6298 - 16 197 142428 128 3 5 48 chain 131017 chr2 243199373 + 225467432 225468983 LTR12C 1709 - 0 1709 27859 84 1 0 397 0 4 6 1 0 100 4 2 4 1 0 116 0 159 837 chain 20564 chr2 243199373 + 225484866 225485123 AluSp 311 + 29 289 125416 91 1 0 51 0 4 114 chain 103470 chr2 243199373 + 225485366 225486517 L1PA5 6144 - 1182 2339 35877 133 0 5 204 0 1 814 chain 104966 chr2 243199373 + 225486522 225487700 L1PA5 6144 + 4946 6132 35506 173 0 1 177 0 4 320 0 1 54 0 1 324 0 1 130 chain 4806 chr2 243199373 + 225521125 225521230 LTR12C 1709 + 654 718 197298 22 41 0 42 chain 24146 chr2 243199373 + 225524498 225524880 MER51B 395 + 0 395 109495 89 0 56 28 55 11 61 1 0 5 0 1 93 0 1 50 chain 4670 chr2 243199373 + 225524900 225524956 L1MB8 1703 - 205 261 198863 56 chain 27592 chr2 243199373 + 225525747 225526408 THE1A 353 - 0 353 94372 120 307 0 123 2 1 109 chain 120463 chr2 243199373 + 225526408 225528224 THE1A-int 1579 - 0 1552 30884 257 9 9 28 18 25 121 277 2 311 5 7 335 10 11 11 1 2 108 0 1 306 7 6 12 chain 27824 chr2 243199373 + 225528249 225528599 THE1A 353 - 0 350 93612 31 1 0 62 0 1 149 1 0 25 3 4 78 chain 25951 chr2 243199373 + 225540226 225540621 THE1C 375 - 0 375 100204 18 3 0 5 15 16 141 34 16 179 chain 26073 chr2 243199373 + 225542369 225542680 AluY 311 + 6 311 99734 112 7 0 14 0 1 178 chain 6683 chr2 243199373 + 225546273 225546400 MSTD 398 - 200 329 179804 39 20 21 24 7 8 37 chain 21763 chr2 243199373 + 225556787 225557255 L1PB1 5432 + 5033 5422 121161 70 59 11 20 1 0 13 1 0 9 17 11 53 2 1 15 1 0 43 2 1 16 25 12 19 7 4 15 2 0 45 1 0 13 1 0 18 chain 12535 chr2 243199373 + 225563025 225563316 L1PB1 5432 - 8 274 150101 4 1 0 16 1 0 13 1 0 21 9 8 16 2 0 14 68 53 42 1 0 16 2 1 53 2 0 9 chain 26705 chr2 243199373 + 225564373 225564745 THE1D 372 + 0 360 97305 76 26 7 106 0 5 131 4 6 29 chain 6453 chr2 243199373 + 225606710 225606813 L1MB2 1706 - 450 551 181617 79 12 10 12 chain 69946 chr2 243199373 + 225609253 225610024 L1PA4 6152 - 4 774 48411 336 1 0 434 chain 52945 chr2 243199373 + 225617976 225618638 LTR12_ 688 - 0 688 57050 472 7 8 45 0 24 60 0 2 53 9 8 16 chain 70123 chr2 243199373 + 225622182 225623101 THE1B-int 1605 + 0 947 48343 25 3 0 5 1 4 398 0 25 122 8 9 116 24 26 217 chain 39307 chr2 243199373 + 225641955 225642504 MLT2A2 560 + 0 559 70311 168 13 12 26 19 20 172 5 15 146 chain 3522 chr2 243199373 + 225648664 225648734 MADE2 80 - 0 69 215029 34 16 15 20 chain 231927 chr2 243199373 + 225675203 225677762 L1PA4 6152 - 1 2560 17203 2559 chain 29181 chr2 243199373 + 225734705 225735079 THE1C 375 + 0 375 88144 328 0 2 18 2 1 26 chain 24930 chr2 243199373 + 225767528 225767820 AluY 311 + 0 288 105159 126 4 0 162 chain 29081 chr2 243199373 + 225769951 225770265 AluYb8 318 - 6 318 88637 186 2 0 126 chain 28531 chr2 243199373 + 225817309 225817608 AluYa5 310 - 11 310 91045 299 chain 28803 chr2 243199373 + 225825444 225825754 AluYg6 310 - 0 310 89887 310 chain 21877 chr2 243199373 + 225840843 225841117 L1PA8 5853 + 5585 5853 120725 25 2 0 69 1 0 10 1 0 51 2 1 19 1 0 93 chain 75706 chr2 243199373 + 225911734 225912690 L1PA6 6164 - 7 1024 45646 95 17 71 437 0 3 141 1 0 238 0 5 27 chain 40813 chr2 243199373 + 225916537 225917026 L1PA5 6144 + 5651 6144 68155 477 1 5 11 chain 9147 chr2 243199373 + 225926285 225926397 MER85 139 + 0 122 164823 89 0 10 23 chain 29944 chr2 243199373 + 225966482 225966831 L1PA6 6164 + 5812 6161 84986 349 chain 5333 chr2 243199373 + 225981389 225981450 MER1B 344 - 188 249 191700 61 chain 110868 chr2 243199373 + 225991081 225992480 L1PA8A 6298 - 10 1399 33978 134 10 8 572 0 1 150 3 0 28 7 0 250 8 0 81 0 9 156 chain 165974 chr2 243199373 + 225992483 225994477 L1PA8A 6298 + 2924 4921 22517 191 2 1 165 0 1 71 3 2 32 3 4 4 1 0 23 0 4 58 0 1 399 0 1 266 0 2 268 1 2 400 5 0 102 chain 82678 chr2 243199373 + 226000000 226000915 L1PA4 6152 + 5230 6146 42472 587 0 1 328 chain 46665 chr2 243199373 + 226003354 226003867 MER9a1 513 - 0 513 61484 513 chain 36339 chr2 243199373 + 226006589 226007052 L1PA8 5853 - 434 896 74450 324 0 1 85 2 0 52 chain 26871 chr2 243199373 + 226007063 226007463 L1PA8 5853 + 5465 5853 96737 50 2 0 49 1 0 45 2 0 46 4 0 27 1 0 10 1 0 48 2 1 19 2 1 27 6 7 58 chain 7127 chr2 243199373 + 226042177 226042483 MLT1A1 405 - 49 332 176567 47 25 0 15 2 4 24 10 9 12 144 145 27 chain 5190 chr2 243199373 + 226046123 226046217 MER33 330 - 111 207 193142 34 11 0 5 0 14 31 1 0 12 chain 2938 chr2 243199373 + 226065197 226065233 L1ME1 1623 - 1408 1444 226363 36 chain 7898 chr2 243199373 + 226069162 226069256 L1PA16 3655 - 78 172 171665 94 chain 26270 chr2 243199373 + 226079804 226080107 AluYf4 310 - 6 310 98932 93 4 5 206 chain 123595 chr2 243199373 + 226093265 226094730 LTR12C 1709 - 0 1709 29844 427 1 2 52 0 4 104 2 0 8 1 0 85 0 200 81 0 41 32 0 1 162 2 1 72 0 1 436 chain 27863 chr2 243199373 + 226112899 226113224 L1PA4 6152 + 5809 6136 93480 156 0 2 169 chain 196023 chr2 243199373 + 226130935 226133092 L1PA3long 6157 - 1 2148 19498 856 2 0 8 8 0 1283 chain 40532 chr2 243199373 + 226156086 226156578 L1PA7 6471 - 6 498 68546 492 chain 28412 chr2 243199373 + 226166298 226166664 THE1B 368 + 0 368 91528 15 2 0 22 0 5 126 1 0 32 2 0 62 0 1 36 0 1 68 chain 13020 chr2 243199373 + 226168373 226168556 THE1B-int 1605 + 1416 1599 148179 58 6 7 67 4 3 48 chain 103552 chr2 243199373 + 226186970 226188107 L1PA3long 6157 - 933 2070 35850 1137 chain 83804 chr2 243199373 + 226188107 226189029 L1PA3long 6157 + 5234 6156 41985 922 chain 50063 chr2 243199373 + 226196190 226196756 L1PA5 6144 - 18 586 58973 210 0 2 356 chain 38482 chr2 243199373 + 226252775 226253307 L1PA8 5853 + 5327 5853 71467 237 1 0 46 2 0 72 8 6 11 1 2 27 18 17 15 5 4 89 chain 16581 chr2 243199373 + 226298377 226298559 AluY 311 + 127 309 136709 182 chain 3813 chr2 243199373 + 226304527 226304570 LTR17 781 - 455 498 210186 43 chain 84817 chr2 243199373 + 226333703 226334725 L1PA7 6471 + 5430 6466 41583 184 0 3 239 0 9 14 0 4 127 0 1 434 12 9 12 chain 186796 chr2 243199373 + 226337526 226339603 L1PA5 6144 - 0 2077 20350 2077 chain 8205 chr2 243199373 + 226382563 226382820 L1MA8 2339 + 1652 1924 169924 17 60 73 46 67 69 67 chain 265612 chr2 243199373 + 226383988 226386902 L1PA3long 6157 - 0 2913 15411 5 2 0 137 0 1 2770 chain 38187 chr2 243199373 + 226388733 226389274 MLT2A2 560 - 0 560 71857 120 34 45 50 6 15 147 1 0 183 chain 6668 chr2 243199373 + 226401903 226401983 L1MA3 4352 - 321 401 179916 80 chain 20517 chr2 243199373 + 226402042 226402387 THE1B 368 - 0 368 125580 111 1 2 12 70 77 107 0 15 44 chain 118659 chr2 243199373 + 226402387 226404951 THE1B-int 1605 - 0 1555 31551 9 0 1 390 0 3 249 4 6 178 1 0 5 0 1 235 1040 0 77 3 28 373 chain 74146 chr2 243199373 + 226403569 226404495 L1PA7 6471 - 7 931 46431 327 0 1 101 1 0 335 0 2 77 2 0 7 7 4 9 1 2 59 chain 26904 chr2 243199373 + 226461876 226462415 L1PB1 5432 - 5 494 96613 4 1 0 11 1 0 16 5 4 20 1 0 15 28 25 5 2 0 12 12 2 13 7 4 16 1 0 44 1 0 17 1 0 34 33 27 14 1 0 10 1 0 18 8 0 13 9 0 165 chain 7165 chr2 243199373 + 226486427 226486519 L1PA7 6471 - 1 93 176303 92 chain 136980 chr2 243199373 + 226508162 226509658 L1PA3long 6157 - 0 1501 26645 154 0 1 564 0 3 733 0 1 45 chain 55545 chr2 243199373 + 226531027 226531829 MER4E1 777 - 8 777 55391 85 0 1 133 22 14 193 12 16 71 23 9 7 17 0 222 0 1 17 chain 311575 chr2 243199373 + 226577521 226580995 L1PA4 6152 + 2673 6151 12941 795 1 0 472 0 1 1711 0 1 210 0 3 285 chain 18981 chr2 243199373 + 226586059 226586287 L1PA7 6471 - 3 231 130155 228 chain 118609 chr2 243199373 + 226608662 226610095 LTR12C 1709 + 0 1709 31577 282 4 0 368 0 278 184 1 0 4 4 2 6 0 2 98 0 4 159 1 0 73 5 7 91 1 0 69 1 0 82 chain 67839 chr2 243199373 + 226612269 226613005 L1PA3long 6157 + 5422 6157 49312 531 1 0 204 chain 33921 chr2 243199373 + 226626384 226626840 MLT2A2 560 + 0 484 77738 169 13 29 55 4 5 144 0 11 71 chain 4663 chr2 243199373 + 226626867 226626918 L1PA6 6164 - 3 54 198925 51 chain 4182 chr2 243199373 + 226638381 226638533 MER3 215 + 47 206 204793 22 73 0 12 11 91 34 chain 15213 chr2 243199373 + 226653650 226653843 MLT2A2 560 - 357 545 140733 165 5 0 23 chain 445305 chr2 243199373 + 226689683 226695447 L1PA8 5853 + 108 5853 8894 189 23 11 351 25 7 115 1 4 86 0 1 672 0 2 324 1 2 85 0 2 58 4 1 446 1 0 4 4 5 409 1 0 24 3 2 313 1 0 40 2 1 996 0 15 26 0 12 56 1 2 128 1 3 138 0 2 369 2 0 73 0 2 266 26 10 204 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 20308 chr2 243199373 + 226698793 226699015 L1PA2 6032 + 5805 6027 126209 222 chain 40801 chr2 243199373 + 226700638 226701184 MLT2A2 560 - 0 560 68174 137 10 21 121 5 9 92 1 0 180 chain 2478 chr2 243199373 + 226715899 226715967 Tigger2b_Pri 1066 - 998 1066 233339 14 20 19 14 1 2 19 chain 103967 chr2 243199373 + 226716126 226738838 L1PA2 6032 - 1 1689 35741 850 21163 139 699 chain 93192 chr2 243199373 + 226738838 226739843 L1PA2 6032 + 5022 6028 38515 285 0 1 720 chain 2988 chr2 243199373 + 226742433 226742474 MLT1E3 631 - 110 152 225296 25 1 2 15 chain 15793 chr2 243199373 + 226802757 226803073 THE1D 372 + 0 332 138977 37 75 74 55 1 0 5 1 8 12 5 0 31 1 17 93 chain 29794 chr2 243199373 + 226804635 226804945 AluYa5 310 - 0 310 85474 310 chain 124539 chr2 243199373 + 226816977 226818411 L1PA5 6144 + 4703 6141 29528 689 0 3 491 1 0 78 0 2 175 chain 25669 chr2 243199373 + 226832150 226832490 THE1A 353 - 0 353 101408 243 2 1 22 3 17 70 chain 5604 chr2 243199373 + 226849716 226849776 L1PA2 6032 + 5970 6030 189043 60 chain 3595 chr2 243199373 + 226866004 226866100 Tigger3 1187 - 61 158 213747 11 5 8 19 29 27 32 chain 38427 chr2 243199373 + 226877459 226878082 L1PB2 3958 + 3220 3837 71540 60 0 4 13 16 14 49 2 1 13 10 0 65 2 0 14 1 0 4 3 0 82 1 0 79 1 0 14 7 8 35 2 0 4 1 0 13 1 0 52 11 9 22 0 16 46 chain 39147 chr2 243199373 + 226888436 226888986 PRIMA4_LTR 623 - 0 623 70542 68 3 5 103 10 56 128 9 11 40 0 1 4 1 0 6 0 23 178 chain 3672 chr2 243199373 + 226927835 226927885 L1MC2 1988 + 1940 1988 212340 8 1 0 34 1 0 6 chain 3446 chr2 243199373 + 226969603 226969643 MLT2A2 560 + 520 560 216275 40 chain 539966 chr2 243199373 + 226971992 226978131 L1PA4 6152 + 1 6152 2820 144 0 22 120 0 1 442 1 2 752 4 2 20 0 1 83 3 0 439 0 1 799 15 7 2982 1 0 334 chain 25679 chr2 243199373 + 226987101 226987574 MLT2A2 560 - 8 560 101374 38 47 13 35 0 6 47 9 118 68 62 59 80 0 1 87 chain 30733 chr2 243199373 + 227008640 227009033 MLT2A1 477 - 72 477 82981 20 0 2 150 0 11 18 0 1 23 0 1 9 5 2 168 chain 21966 chr2 243199373 + 227017576 227017808 AluYa5 310 - 0 232 120375 232 chain 18750 chr2 243199373 + 227062417 227062781 THE1D 372 - 0 372 130824 32 1 0 102 32 33 11 25 34 46 52 51 63 chain 10460 chr2 243199373 + 227093019 227093172 MER107 203 - 41 195 158437 64 15 16 74 chain 42646 chr2 243199373 + 227105716 227106225 MLT2A2 560 + 50 560 65846 500 0 1 9 chain 277773 chr2 243199373 + 227117550 227120931 L1PA6 6164 + 2757 6162 14759 426 1 0 6 0 1 33 0 1 99 0 6 193 0 1 174 2 0 254 1 2 75 0 4 183 0 2 86 11 0 60 0 1 71 0 1 243 13 12 17 0 4 71 0 1 523 0 4 170 3 19 331 0 1 254 0 1 69 6 0 6 chain 5456 chr2 243199373 + 227126793 227126858 MLT1A0 366 - 53 118 190465 65 chain 17897 chr2 243199373 + 227146120 227146418 THE1B 368 + 0 302 133108 169 1 0 11 55 60 62 chain 11481 chr2 243199373 + 227154924 227155165 L1PB1 5432 + 5190 5414 154368 30 2 1 15 1 0 45 1 0 9 31 21 12 14 11 12 2 0 24 1 0 20 0 3 11 1 0 10 chain 74563 chr2 243199373 + 227155670 227156718 MER11A 1151 + 0 1147 46229 55 0 99 140 4 0 19 0 1 129 0 1 94 0 7 138 6 7 145 25 1 26 16 21 37 0 1 20 8 19 21 14 15 151 chain 38587 chr2 243199373 + 227193036 227193478 L1PA4 6152 + 5702 6143 71310 190 1 0 251 chain 7081 chr2 243199373 + 227196730 227196841 L1PB1 5432 + 5193 5300 176878 26 3 2 16 1 0 44 1 0 15 1 0 4 chain 7162 chr2 243199373 + 227205763 227205881 Ricksha_0 1343 + 1161 1281 176326 25 1 0 57 0 2 8 11 12 16 chain 3212 chr2 243199373 + 227207148 227207186 L1MC 810 + 505 543 220702 38 chain 29285 chr2 243199373 + 227226007 227226322 AluYb8 318 - 5 318 87636 187 2 0 126 chain 22605 chr2 243199373 + 227274297 227274630 MSTA 426 - 26 400 117569 83 1 21 44 20 18 26 2 0 44 0 4 31 0 21 82 chain 20911 chr2 243199373 + 227274819 227275072 L1PA7 6471 - 4 258 124239 9 2 0 115 0 3 127 chain 26126 chr2 243199373 + 227306503 227306852 L1PB2 3958 - 616 970 99499 8 0 1 26 2 0 235 0 5 38 4 5 36 chain 27730 chr2 243199373 + 227306861 227307267 L1PB2 3958 + 3439 3838 93937 11 4 0 21 0 3 71 1 0 73 14 13 50 2 1 71 2 0 22 1 0 63 chain 497927 chr2 243199373 + 227318345 227324929 L1PA7 6471 + 1 6470 6959 378 1 0 26 3 0 7 53 40 180 0 3 13 4 3 358 1 25 239 0 1 75 1 0 505 5 0 147 0 1 324 0 1 192 0 2 155 2 1 272 6 10 265 0 1 266 9 6 119 2 213 360 0 2 69 0 2 406 0 4 277 0 1 36 6 7 88 4 5 165 38 0 72 318 0 679 1 0 135 0 7 176 2 3 132 1 4 11 chain 19559 chr2 243199373 + 227344038 227344263 AluY 311 + 85 311 128492 41 0 1 184 chain 45992 chr2 243199373 + 227349475 227350028 MER41A 554 + 0 554 62048 307 0 1 246 chain 11599 chr2 243199373 + 227359772 227360035 L1PB1 5432 + 5191 5424 153892 29 2 1 11 10 9 36 10 3 16 1 0 4 19 8 19 8 5 14 2 0 24 1 0 22 1 0 12 1 0 16 1 0 4 chain 2907 chr2 243199373 + 227390335 227390367 MADE1 96 - 2 34 226917 32 chain 25802 chr2 243199373 + 227397560 227397946 L1PA8 5853 - 0 384 100861 92 23 21 27 21 24 10 1 0 18 0 1 52 2 0 43 2 1 95 chain 43048 chr2 243199373 + 227438492 227438961 L1PA2 6032 - 1084 1553 64578 469 chain 98967 chr2 243199373 + 227438961 227440028 L1PA2 6032 + 4964 6031 37033 1067 chain 343386 chr2 243199373 + 227451311 227455962 L1PA11 4918 - 289 4901 11804 18 133 103 15 6 5 11 5 3 66 2 1 12 5 7 58 28 9 253 1 12 634 0 1 145 8 10 138 3 4 96 1 0 471 24 10 348 6 10 142 1 0 95 0 3 135 4 1 200 6 10 257 1 2 108 1 3 156 7 9 298 2 6 26 0 5 517 1 0 4 2 0 31 1 0 53 2 0 5 14 16 28 4 1 36 2 0 25 chain 6536 chr2 243199373 + 227456408 227456487 L1PA11 4918 - 1888 1967 180953 79 chain 42888 chr2 243199373 + 227459262 227459761 L1PA5 6144 - 6 505 65550 107 1 0 204 0 1 187 chain 5518 chr2 243199373 + 227478994 227479136 L1MA9 1812 + 1485 1612 189859 11 10 0 21 1 0 18 22 21 10 3 1 15 1 0 30 chain 26477 chr2 243199373 + 227481521 227481899 L1PA8 5853 - 0 375 98136 93 2 1 16 4 3 132 3 1 43 1 0 47 0 2 37 chain 19323 chr2 243199373 + 227495173 227495499 THE1D 372 + 0 332 129174 61 6 16 88 22 23 9 1 0 5 16 13 29 2 0 5 0 1 82 chain 15521 chr2 243199373 + 227513201 227513492 LTR12C 1709 + 935 1192 139830 33 0 1 136 44 13 15 30 26 33 chain 35530 chr2 243199373 + 227552878 227553290 L1PB1 5432 - 1086 1498 75503 412 chain 67700 chr2 243199373 + 227553304 227554394 L1PB1 5432 + 4370 5411 49365 218 28 1 42 0 3 68 7 6 59 1 0 30 1 9 286 22 14 11 3 0 21 1 0 4 5 4 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 15 29 16 15 2 0 5 1 0 14 10 16 8 1 0 22 0 3 9 1 0 7 chain 24471 chr2 243199373 + 227571957 227572320 THE1B 368 - 10 368 107698 132 23 1 42 1 0 4 8 11 109 0 15 44 chain 37977 chr2 243199373 + 227601660 227602081 L1PA2 6032 - 3 424 72164 421 chain 3794 chr2 243199373 + 227627416 227627460 MADE1 96 + 1 45 210472 44 chain 47846 chr2 243199373 + 227650473 227651005 L1PA3long 6157 - 12 544 60594 532 chain 166535 chr2 243199373 + 227706664 227708784 L1PA11 4918 - 401 2530 22456 9 4 0 20 1 0 14 2 0 67 2 0 13 2 1 68 9 12 308 7 11 303 0 1 9 0 9 144 0 4 148 0 1 141 0 2 381 8 9 127 1 0 12 1 0 117 0 1 7 4 0 81 1 0 109 chain 10186 chr2 243199373 + 227722676 227722805 MER85 139 + 0 139 159693 99 0 10 30 chain 2470 chr2 243199373 + 227755433 227755464 L1MA3 4352 + 4258 4288 233478 25 1 0 5 chain 3181 chr2 243199373 + 227798387 227798424 MER57B1 401 + 298 335 221321 37 chain 108266 chr2 243199373 + 227809893 227811187 L1PA7 6471 - 17 1426 34626 457 0 2 240 0 3 35 6 7 54 0 1 31 0 4 322 0 104 149 chain 30618 chr2 243199373 + 227811187 227811623 L1P3 4156 + 3432 4139 82811 51 0 1 58 2 6 182 4 0 68 6 277 19 0 1 6 8 6 6 1 0 15 0 1 10 chain 54132 chr2 243199373 + 227811771 227812355 L1PA2 6032 - 955 1539 55970 584 chain 85896 chr2 243199373 + 227812355 227813296 L1PA2 6032 + 5087 6032 41197 95 0 4 846 chain 28076 chr2 243199373 + 227836641 227837050 L1PA8 5853 - 0 403 92730 55 1 2 28 9 8 19 2 1 45 18 16 70 2 0 45 1 0 114 chain 21325 chr2 243199373 + 227845818 227846087 L1PA6 6164 + 5890 6160 122772 121 5 6 143 chain 68418 chr2 243199373 + 227851187 227852057 L1PA8 5853 + 4982 5853 49079 24 1 3 207 0 1 115 0 1 93 0 2 136 1 0 45 2 0 70 1 0 60 23 22 92 chain 21090 chr2 243199373 + 227865432 227865780 THE1B 368 + 0 368 123578 44 0 15 16 1 0 17 6 4 72 1 0 30 35 45 4 0 1 87 4 2 31 chain 29291 chr2 243199373 + 227892023 227892355 L1PA5 6144 + 5814 6139 87617 176 7 0 149 chain 32723 chr2 243199373 + 227899298 227899651 L1PA3long 6157 - 14 367 79651 353 chain 127102 chr2 243199373 + 227901819 227903333 L1PA7 6471 - 17 1550 28789 323 1 0 360 1 0 65 2 0 32 0 2 51 1 4 32 0 17 74 0 1 572 chain 22927 chr2 243199373 + 227916635 227916919 AluSq2 311 + 11 296 115983 20 0 1 79 6 5 17 0 1 162 chain 538971 chr2 243199373 + 227929601 227935601 L1PA3long 6157 + 10 6156 2997 142 0 1 214 2 11 394 4 132 26 1 5 265 0 1 7 1 0 193 0 9 2335 0 1 199 1 2 694 1 0 745 0 1 631 6 0 134 1 0 4 chain 214259 chr2 243199373 + 227939628 227942377 L1PA8 5853 + 3126 5853 18212 22 27 12 37 14 5 192 11 14 96 0 11 137 1 2 321 0 3 362 4 1 490 0 1 175 0 2 38 5 0 37 0 2 435 1 0 7 22 21 15 1 0 45 2 0 66 11 7 6 1 0 44 1 0 8 2 1 19 1 0 93 chain 17743 chr2 243199373 + 227965830 227966075 THE1B 368 + 121 365 133586 30 7 9 12 4 2 178 1 0 13 chain 4306 chr2 243199373 + 227984301 227984371 MADE1 96 - 5 96 203131 18 10 31 42 chain 16493 chr2 243199373 + 228014066 228014263 MER107 203 + 0 203 136948 162 0 6 35 chain 19721 chr2 243199373 + 228024228 228024552 THE1C 375 + 0 336 128038 14 2 0 33 4 5 127 0 2 5 52 63 87 chain 81613 chr2 243199373 + 228033608 228034498 L1PA3long 6157 - 0 890 42922 890 chain 7813 chr2 243199373 + 228036261 228036369 MLT1A 405 - 0 111 172230 57 9 12 42 chain 4491 chr2 243199373 + 228062128 228062182 Tigger3c 601 + 485 540 200897 10 0 1 44 chain 24844 chr2 243199373 + 228067179 228067463 AluYk4 311 + 1 294 105657 116 0 9 168 chain 18270 chr2 243199373 + 228081722 228082062 THE1B 368 - 20 368 132155 29 14 13 57 66 72 61 6 9 107 chain 4097 chr2 243199373 + 228096965 228097014 U5 65 + 0 49 205984 49 chain 25658 chr2 243199373 + 228100186 228100983 L1PB1 5432 - 12 476 101458 16 1 0 11 1 0 23 1 0 24 2 0 14 0 31 8 36 0 12 1 0 45 2 1 10 8 7 50 2 0 9 2 0 3 2 0 10 313 0 8 1 0 24 3 0 7 8 11 140 chain 4326 chr2 243199373 + 228118987 228119034 MER41B 635 - 107 154 202884 47 chain 12756 chr2 243199373 + 228121585 228121761 Tigger3a 397 - 33 239 149232 73 9 39 94 chain 12629 chr2 243199373 + 228140662 228140819 MER75B 242 - 16 178 149733 77 0 4 14 0 1 66 chain 13991 chr2 243199373 + 228164129 228164293 THE1C 375 - 211 375 144608 164 chain 55038 chr2 243199373 + 228184690 228187285 MER4E 760 - 0 760 55683 316 1 0 61 20 23 12 3 0 62 1837 0 121 13 16 149 chain 10743 chr2 243199373 + 228185907 228186343 LTR12C 1709 + 910 1109 157232 112 238 0 23 42 43 21 chain 4467 chr2 243199373 + 228186343 228186431 LTR12C 1709 + 671 718 189728 12 41 0 35 chain 2415 chr2 243199373 + 228186363 228186396 LTR12C 1709 + 732 802 213889 26 0 37 7 chain 55539 chr2 243199373 + 228188424 228189175 MER4E1 777 + 4 773 55396 21 3 0 126 0 5 40 33 27 19 1 0 236 0 14 39 1 0 10 1 9 202 0 2 19 chain 29313 chr2 243199373 + 228196676 228196987 AluYa5 310 - 0 310 87498 184 1 0 126 chain 3843 chr2 243199373 + 228199904 228199972 L1MB5 1630 + 1310 1380 209738 41 9 12 13 1 0 4 chain 5894 chr2 243199373 + 228238237 228238330 MER58A 224 + 9 119 186240 16 10 27 67 chain 28017 chr2 243199373 + 228247009 228247386 THE1C 375 + 0 375 92943 125 3 0 60 11 13 151 1 0 26 chain 21577 chr2 243199373 + 228252845 228253121 AluSc8 310 + 8 287 121859 123 1 4 16 2 0 6 1 3 127 chain 38384 chr2 243199373 + 228254883 228255387 MER41C 542 - 9 535 71593 121 2 1 69 10 31 263 0 2 39 chain 7505 chr2 243199373 + 228288762 228288884 MER5A1 166 + 0 123 174131 75 19 20 28 chain 36668 chr2 243199373 + 228309199 228309648 LTR7 482 - 0 482 74002 49 12 14 136 1 32 251 chain 9521 chr2 243199373 + 228309660 228309778 MER41C 542 - 0 119 162973 70 0 1 48 chain 14239 chr2 243199373 + 228323389 228323589 MER30 238 - 0 213 143761 39 3 0 61 3 0 9 6 25 79 chain 22634 chr2 243199373 + 228400742 228401033 L1PA6 6164 - 2 291 117407 9 0 2 147 0 1 45 7 4 60 2 0 21 chain 508883 chr2 243199373 + 228404915 228411335 L1PA5 6144 - 0 6144 6252 11 0 4 132 10 8 695 2 0 18 1 5 545 2 1 380 0 4 63 0 32 361 0 2 297 0 2 91 5 9 74 3 0 392 0 2 591 20 0 243 283 0 187 0 1 825 35 26 5 1 0 186 25 0 249 1 0 134 0 1 166 5 6 250 0 14 132 chain 8236 chr2 243199373 + 228427573 228427669 MER85 139 + 0 96 169746 96 chain 6986 chr2 243199373 + 228449308 228449460 MSTB 430 + 16 186 177567 27 37 38 50 8 25 30 chain 86529 chr2 243199373 + 228454785 228456381 L1PREC2 3366 - 318 1579 40961 22 10 1 15 7 5 34 22 8 11 12 9 21 3 1 15 77 60 39 2 1 51 9 7 76 0 1 284 1 0 138 286 0 418 0 1 43 chain 10534 chr2 243199373 + 228502398 228502532 L1P4 1494 + 1257 1390 158118 92 2 1 40 chain 19614 chr2 243199373 + 228538336 228538685 MSTA 426 + 0 402 128352 100 9 44 62 4 0 6 59 61 23 1 21 85 chain 92854 chr2 243199373 + 228543062 228544087 L1PA3long 6157 + 5132 6157 38700 1025 chain 9534 chr2 243199373 + 228546890 228547014 MER1A 529 - 0 123 162914 67 1 0 56 chain 3992 chr2 243199373 + 228580837 228581014 LTR37A 408 + 75 251 207504 25 27 28 28 72 72 5 2 0 18 chain 209811 chr2 243199373 + 228596990 228599379 L1PA5 6144 + 3739 6135 18501 605 0 4 192 0 1 895 0 3 40 1 0 656 chain 9273 chr2 243199373 + 228604034 228604440 LTR14B 630 + 0 628 164203 56 0 179 39 33 54 24 228 250 26 chain 20386 chr2 243199373 + 228617098 228617485 LTR8 732 + 0 402 125941 18 8 9 23 0 13 69 0 3 5 35 31 18 1 0 4 1 3 69 38 39 98 chain 44509 chr2 243199373 + 228638884 228639437 LTR22 571 - 0 571 63570 199 0 7 167 1 2 28 0 11 78 1 0 79 chain 27293 chr2 243199373 + 228649488 228649798 L1PA6 6164 + 5726 6036 95292 310 chain 341637 chr2 243199373 + 228700724 228704859 L1P3 4156 - 17 4152 11847 24 11 8 111 5 3 115 0 1 149 0 12 160 3 0 62 2 1 258 0 1 604 3 1 603 1 0 1419 0 1 8 8 6 270 1 0 67 8 7 15 7 8 221 chain 12270 chr2 243199373 + 228742276 228742550 MER1B 344 - 10 285 151111 49 6 18 51 75 71 10 4 1 21 5 1 53 chain 7152 chr2 243199373 + 228799348 228799500 MLT1B 390 + 14 155 176391 12 1 0 44 10 12 38 27 15 20 chain 28308 chr2 243199373 + 228799572 228799968 L1PA8 5853 - 0 386 91908 90 1 0 22 2 1 52 5 1 8 2 1 69 2 0 45 1 0 97 chain 6158 chr2 243199373 + 228815388 228815456 THE1D-int 1627 + 1554 1622 183919 68 chain 23951 chr2 243199373 + 228816564 228816925 THE1B 368 + 0 368 110618 44 0 15 113 11 10 10 3 1 66 7 9 25 1 0 16 6 0 59 chain 5421 chr2 243199373 + 228821025 228821091 L1PA2 6032 - 0 64 190791 5 2 0 59 chain 18190 chr2 243199373 + 228829018 228829449 LTR23 429 - 11 427 132355 61 22 21 63 25 36 83 33 16 19 80 72 45 chain 358723 chr2 243199373 + 228829452 228833641 L1PA6 6164 - 2 4205 11384 5 2 0 133 8 9 816 1 2 287 1 2 536 0 8 1088 0 1 28 1 0 30 2 1 25 0 1 589 2 1 155 0 3 117 2 1 109 0 2 20 1 3 231 chain 22342 chr2 243199373 + 228839237 228839620 THE1C 375 + 0 375 118738 28 3 0 5 0 5 146 19 16 31 29 18 34 17 21 71 chain 14616 chr2 243199373 + 228850998 228851282 L1PB1 5432 + 5168 5427 142531 52 2 1 15 1 0 43 2 1 16 1 0 4 2 0 11 9 0 16 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 4783 chr2 243199373 + 228864671 228864892 L1MC1 2226 - 51 254 197533 23 118 106 40 8 7 7 2 0 14 3 0 6 chain 485222 chr2 243199373 + 228866296 228871871 L1PA5 6144 - 9 6144 7550 845 0 3 670 0 1 265 0 4 188 0 1 261 0 1 118 0 1 522 1 6 533 0 3 333 0 3 126 0 2 443 0 10 944 0 1 235 0 525 91 chain 49434 chr2 243199373 + 228879635 228880197 L1PA3long 6157 - 0 558 59431 15 3 0 127 0 1 12 2 1 183 1 0 219 chain 39203 chr2 243199373 + 228884965 228885442 L1PA5 6144 + 5666 6143 70451 145 1 0 170 7 8 154 chain 535665 chr2 243199373 + 228895610 228901759 L1PA4 6152 + 0 6150 3496 136 1 15 429 1 0 253 17 0 210 0 2 284 0 3 5 22 19 93 0 1 223 0 4 388 1 0 4081 1 0 4 chain 86995 chr2 243199373 + 228909512 228910475 L1PA4 6152 + 5189 6152 40782 963 chain 9792 chr2 243199373 + 228913338 228913458 Tigger3a 397 + 170 290 161644 120 chain 14583 chr2 243199373 + 228939013 228939374 THE1D 372 - 1 372 142651 25 9 8 74 95 98 8 0 3 18 0 1 50 18 19 20 3 0 6 6 12 29 chain 115153 chr2 243199373 + 228940987 228942516 THE1B-int 1605 + 0 1585 32733 302 0 1 123 13 38 75 7 8 359 0 3 8 19 45 48 14 5 4 0 2 68 3 10 486 chain 11635 chr2 243199373 + 228945504 228945693 L1MA8 2339 + 1589 1774 153749 12 12 5 36 6 1 54 0 8 69 chain 43452 chr2 243199373 + 228948250 228948815 L1PA8 5853 + 5295 5853 64869 220 6 7 42 1 0 46 2 0 68 2 1 10 1 0 71 1 0 73 3 1 19 chain 76545 chr2 243199373 + 228955976 228957764 L1PB1 5432 + 4310 5423 45189 267 0 1 35 1 0 13 3 0 79 4 3 104 0 1 290 647 4 9 0 2 20 10 8 12 5 1 9 2 0 52 2 1 15 1 0 38 12 11 11 24 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 40366 chr2 243199373 + 228963017 228963477 L1PA4 6152 + 5680 6140 68784 318 1 0 4 1 2 136 chain 16821 chr2 243199373 + 228970277 228970639 THE1B 368 + 0 368 136061 108 28 29 14 51 44 4 0 1 14 14 26 66 17 16 46 chain 9987 chr2 243199373 + 228988391 228988504 L1PA4 6152 - 942 1055 160647 113 chain 80706 chr2 243199373 + 228988520 228989447 L1PA4 6152 + 5212 6140 43305 89 2 1 423 0 1 312 0 1 101 chain 65845 chr2 243199373 + 229015651 229016381 L1PA3long 6157 - 0 731 50169 512 0 1 218 chain 4840 chr2 243199373 + 229024161 229024220 MER67C 710 - 398 458 196884 47 0 1 12 chain 21532 chr2 243199373 + 229041319 229041613 AluSp 311 + 11 304 122038 58 9 12 118 11 7 98 chain 18277 chr2 243199373 + 229047925 229048330 L1PB1 5432 - 5 380 132135 5 2 0 18 1 0 9 1 4 21 1 0 20 32 27 24 10 0 3 2 0 15 1 0 45 7 6 6 0 2 50 22 16 9 1 0 9 1 0 24 1 0 8 11 8 46 chain 22927 chr2 243199373 + 229050972 229051269 AluY 311 + 9 288 115978 109 18 0 170 chain 541356 chr2 243199373 + 229063866 229070015 L1PA4 6152 - 12 6144 2612 101 0 1 713 0 1 665 0 1 1312 0 2 843 12 0 475 0 1 259 0 1 423 5 1 634 7 0 127 1 0 572 chain 7604 chr2 243199373 + 229077916 229078087 L1MA3 4352 + 4189 4352 173517 26 13 14 31 2 0 22 13 11 21 1 0 14 10 6 18 chain 105957 chr2 243199373 + 229083222 229084483 L1PA6 6164 + 4900 6162 35266 415 0 1 566 1 0 196 1 2 82 chain 496200 chr2 243199373 + 229093745 229099225 L1PA3long 6157 - 1 5593 7058 317 0 1 4768 17 0 166 0 128 212 chain 14574 chr2 243199373 + 229103726 229103899 L1PA5 6144 + 5952 6139 142670 12 4 18 157 chain 10588 chr2 243199373 + 229184521 229184650 MER85 139 + 0 139 157880 90 0 10 39 chain 83918 chr2 243199373 + 229192392 229193450 MER11B 1079 - 0 1079 41945 24 10 9 273 5 7 187 7 9 5 1 0 231 1 18 113 1 3 200 chain 24513 chr2 243199373 + 229207521 229207815 AluSq2 311 + 10 301 107479 123 0 1 63 5 1 103 chain 23526 chr2 243199373 + 229223685 229223951 L1PA3long 6157 - 0 265 112985 149 1 0 116 chain 76130 chr2 243199373 + 229228357 229229325 LTR5_Hs 974 - 0 974 45406 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 17733 chr2 243199373 + 229231645 229231871 L1PA5 6144 - 3 230 133611 133 1 8 10 7 1 75 chain 164552 chr2 243199373 + 229250418 229252297 L1PA4 6152 - 11 1868 22737 1211 23 1 645 chain 109081 chr2 243199373 + 229254669 229256096 L1P2 5180 - 3730 5178 34426 388 1 2 262 0 15 217 4 3 44 11 32 41 8 0 195 9 7 40 1 0 40 1 0 4 0 1 9 6 5 108 3 0 35 chain 19731 chr2 243199373 + 229259443 229259737 THE1B 368 - 0 298 128009 125 8 7 4 1 0 14 7 11 6 0 3 29 1 0 99 chain 28898 chr2 243199373 + 229271497 229271871 THE1C 375 + 0 375 89460 129 0 1 53 1 2 164 1 0 26 chain 23228 chr2 243199373 + 229276698 229276962 AluY 311 + 21 285 114553 264 chain 2952 chr2 243199373 + 229281664 229281696 MER52D 1964 - 912 944 226055 32 chain 547709 chr2 243199373 + 229284703 229290736 L1PA2 6032 - 4 6024 1741 7 4 0 9 1 0 3165 1 0 2079 2 0 234 4 0 277 1 0 249 chain 21306 chr2 243199373 + 229293329 229293667 THE1B 368 + 0 340 122838 39 1 0 115 0 1 14 1 0 22 50 53 96 chain 23123 chr2 243199373 + 229302161 229302455 MLT2A1 477 + 4 306 115028 13 0 4 121 0 1 25 1 5 22 3 2 109 chain 126556 chr2 243199373 + 229305245 229306681 L1PA5 6144 - 3 1445 28927 746 0 3 235 0 3 455 chain 37614 chr2 243199373 + 229327783 229328297 HERVL-int 5654 - 408 915 72668 19 0 1 6 15 3 54 1 2 263 11 14 145 chain 184910 chr2 243199373 + 229345903 229347974 L1PA3long 6157 - 0 2062 20508 395 4 0 1123 3 0 61 2 0 483 chain 28237 chr2 243199373 + 229362570 229362892 L1PA4 6152 + 5830 6152 92168 322 chain 184426 chr2 243199373 + 229400386 229402994 MER4-int 2692 + 78 2692 20548 21 1 0 21 5 0 42 19 19 301 7 9 38 12 12 18 1 0 4 0 1 30 0 1 106 2 1 13 14 11 58 0 13 300 1 6 214 17 14 107 0 1 70 5 0 121 0 1 129 2 3 17 1 0 110 0 2 122 5 4 110 0 2 13 2 0 123 40 37 70 1 4 114 0 1 57 3 2 141 chain 21164 chr2 243199373 + 229427625 229427877 AluY 311 + 38 291 123332 94 0 1 158 chain 548130 chr2 243199373 + 229432973 229438997 L1PA2 6032 + 0 6029 1689 197 2 1 58 1 0 656 1 0 2883 0 1 179 0 2 342 0 1 1127 0 4 578 chain 22898 chr2 243199373 + 229447652 229448020 THE1C 375 - 0 375 116119 176 3 0 17 0 3 40 27 32 4 0 1 11 13 0 8 5 19 64 chain 14818 chr2 243199373 + 229471051 229471211 L1PA3long 6157 - 0 160 141889 160 chain 61636 chr2 243199373 + 229471216 229471946 L1P1 4361 + 3636 4341 52062 245 22 0 269 1 0 155 1 0 23 2 1 12 chain 20703 chr2 243199373 + 229476639 229476884 AluY 311 + 38 288 124953 93 0 2 57 0 3 95 chain 9175 chr2 243199373 + 229479402 229479526 MER4D1 891 + 78 200 164685 11 2 0 111 chain 30928 chr2 243199373 + 229490599 229490998 MER4A1 472 - 19 442 82638 199 7 29 123 0 2 70 chain 26206 chr2 243199373 + 229499345 229499712 THE1B 368 - 0 368 99178 75 1 0 98 2 0 21 6 5 127 4 9 33 chain 22712 chr2 243199373 + 229499717 229499998 THE1B-int 1605 - 5 285 117025 215 2 1 64 chain 20659 chr2 243199373 + 229501288 229501605 THE1B 368 - 0 324 125111 75 1 0 99 2 0 17 9 8 10 25 36 79 chain 2530 chr2 243199373 + 229501606 229501646 THE1B 368 - 330 368 232748 22 3 1 15 chain 14095 chr2 243199373 + 229530426 229530640 L1PA8 5853 + 5581 5785 144236 27 3 1 73 6 1 12 7 6 39 2 1 19 1 0 25 chain 216256 chr2 243199373 + 229557717 229560350 L1PA6 6164 - 1726 4372 18103 499 6 15 221 1 0 323 4 7 150 0 1 43 3 0 1185 6 19 108 13 4 71 chain 144812 chr2 243199373 + 229560350 229562067 L1PA6 6164 + 4436 6159 25303 364 4 5 513 0 4 822 0 1 14 chain 6304 chr2 243199373 + 229568336 229568463 L1MC2 1988 - 0 122 182757 42 1 0 4 33 26 7 0 3 40 chain 40771 chr2 243199373 + 229573563 229574043 L1PA7 6471 - 7 487 68212 480 chain 72542 chr2 243199373 + 229579313 229580176 MER11D 897 - 9 885 47249 271 3 26 89 9 0 221 1 0 269 chain 16603 chr2 243199373 + 229581168 229581352 L1PA4 6152 - 17 201 136657 184 chain 10157 chr2 243199373 + 229581352 229581464 L1PA4 6152 + 5834 5946 159816 112 chain 85375 chr2 243199373 + 229606141 229607099 L1PA4 6152 - 9 967 41390 148 1 0 182 0 1 627 chain 79550 chr2 243199373 + 229607099 229607979 L1PA4 6152 + 4313 5193 43805 880 chain 555670 chr2 243199373 + 229620409 229626433 L1PA2 6032 + 0 6027 754 256 1 0 2786 0 1 1145 0 1 1411 0 2 425 chain 29224 chr2 243199373 + 229632825 229633203 THE1C 375 - 0 375 87936 26 1 0 229 3 0 12 0 1 107 chain 59996 chr2 243199373 + 229648753 229649452 L1PA7 6471 - 220 922 52827 551 0 2 5 2 0 63 0 3 78 chain 17878 chr2 243199373 + 229649452 229649666 L1PA7 6471 + 6256 6470 133168 214 chain 14130 chr2 243199373 + 229655900 229656271 MSTB 430 - 13 414 144105 87 0 3 5 178 205 101 chain 16249 chr2 243199373 + 229675156 229675473 THE1B 368 - 0 368 137617 37 20 17 23 17 15 33 19 34 4 0 1 6 3 0 25 2 1 84 6 50 38 chain 53232 chr2 243199373 + 229679059 229679935 L1PB 1623 + 729 1575 56871 55 8 24 5 0 1 91 18 0 17 1 6 157 3 4 62 3 1 6 0 2 144 2 1 141 1 0 7 2 1 30 83 62 7 11 0 22 chain 2907 chr2 243199373 + 229693298 229693330 MER31B 477 - 215 247 226929 32 chain 19970 chr2 243199373 + 229694159 229694461 THE1B 368 + 0 307 127234 116 0 1 25 1 3 24 1 0 9 0 2 13 2 0 6 0 1 14 28 30 63 chain 3719 chr2 243199373 + 229695478 229695558 MSTB1 431 - 178 260 211653 16 29 31 35 chain 206427 chr2 243199373 + 229695587 229697871 L1PA3long 6157 + 3874 6154 18760 733 8 0 1216 0 1 316 0 3 11 chain 43831 chr2 243199373 + 229708196 229708695 L1PA4 6152 + 5639 6141 64405 178 0 1 161 5 7 155 chain 40330 chr2 243199373 + 229711695 229712241 MLT2A2 560 + 0 560 68835 296 3 4 105 1 12 72 0 1 10 9 10 50 chain 205632 chr2 243199373 + 229718406 229720645 L1PA2 6032 + 3792 6031 18815 2239 chain 29459 chr2 243199373 + 229758979 229759288 AluYa5 310 - 1 310 86798 309 chain 21952 chr2 243199373 + 229772848 229773174 L1PA8 5853 + 5532 5853 120414 8 0 1 23 1 0 44 2 0 70 2 1 57 10 9 13 4 3 92 chain 21770 chr2 243199373 + 229774828 229775133 L1PA10 4194 - 33 329 120300 11 1 0 34 3 0 34 1 0 19 11 0 10 0 7 181 chain 46233 chr2 243199373 + 229775133 229775737 L1PA10 4194 + 3230 3841 61824 53 5 8 239 10 11 70 0 1 122 0 2 105 chain 241970 chr2 243199373 + 229795194 229798147 L1PA7 6471 - 1 2985 16672 73 5 1 36 1 0 46 5 22 646 8 7 6 0 1 11 1 0 334 1 0 6 0 1 330 0 1 1063 0 2 322 0 16 11 0 1 48 chain 223081 chr2 243199373 + 229811206 229813699 L1PA4 6152 + 3636 6143 17707 57 2 0 580 0 7 67 0 4 187 0 6 750 1 0 849 chain 4992 chr2 243199373 + 229816117 229816581 L1MB8 1703 + 1014 1492 195221 49 304 315 26 67 70 18 chain 22773 chr2 243199373 + 229832514 229832867 THE1D 372 + 18 372 116715 21 15 3 124 20 28 44 0 6 64 6 6 26 1 0 32 chain 7714 chr2 243199373 + 229837371 229837596 L1PB1 5432 - 5 196 172837 4 1 0 4 1 0 15 1 0 13 1 0 21 1 0 24 3 0 9 0 8 7 12 1 10 34 22 8 8 0 8 3 0 37 chain 74767 chr2 243199373 + 229885544 229886394 L1PA4 6152 + 5292 6141 46126 9 3 1 735 1 2 102 chain 5323 chr2 243199373 + 229893713 229893778 L1PA16 3655 + 3512 3578 191793 18 0 1 47 chain 22750 chr2 243199373 + 229898133 229898401 L1PA7 6471 + 6197 6466 116827 255 0 1 13 chain 4577 chr2 243199373 + 229904183 229904244 Charlie2b 853 + 734 795 199910 61 chain 22697 chr2 243199373 + 229931699 229932033 THE1C 375 - 35 375 117090 26 0 1 227 33 40 33 2 0 13 chain 183991 chr2 243199373 + 229941112 229943424 L1PA7 6471 - 5 2314 20591 7 3 0 343 2 0 321 0 2 82 2 0 6 1 5 15 0 4 67 1 0 8 0 4 757 16 0 173 0 4 87 4 3 6 0 1 88 3 4 114 0 1 129 1 2 76 chain 25057 chr2 243199373 + 229968287 229968582 AluSg7 307 - 3 297 104520 174 1 0 120 chain 3288 chr2 243199373 + 229985855 229985894 MLT2B1 522 + 475 514 219244 39 chain 13415 chr2 243199373 + 229998497 229998653 L1PA4 6152 - 0 153 146652 5 3 0 148 chain 72298 chr2 243199373 + 230007281 230008072 L1PA3long 6157 + 5366 6157 47334 791 chain 19933 chr2 243199373 + 230010941 230011208 L1PA8 5853 + 5591 5852 127351 20 2 0 68 1 0 9 1 0 52 2 1 19 2 1 91 chain 11234 chr2 243199373 + 230045354 230045487 HERVK-int 6823 - 5152 5285 155293 133 chain 22662 chr2 243199373 + 230050137 230050521 THE1B 368 - 0 368 117260 58 25 23 85 8 0 8 19 0 22 8 6 54 0 1 56 1 16 12 1 0 27 chain 3102 chr2 243199373 + 230057818 230057854 MLT1H1 527 - 92 128 222900 36 chain 3271 chr2 243199373 + 230064912 230064948 MADE1 96 - 3 39 219573 36 chain 2856 chr2 243199373 + 230087622 230087652 MLT2B4 540 + 506 536 227757 30 chain 28314 chr2 243199373 + 230107708 230108075 THE1B 368 - 0 368 91888 174 0 2 14 7 6 172 chain 19320 chr2 243199373 + 230123376 230123599 AluY 311 + 84 304 129177 48 0 1 10 4 0 161 chain 4477 chr2 243199373 + 230153393 230153443 HERVK11D-int 613 + 563 613 201048 50 chain 68632 chr2 243199373 + 230153443 230154219 MER11D 897 + 0 799 48968 593 1 24 182 chain 7800 chr2 243199373 + 230211316 230211418 MER20 218 + 52 159 172309 31 1 6 70 chain 33881 chr2 243199373 + 230218881 230219252 L1PA4 6152 + 5769 6140 77806 371 chain 541885 chr2 243199373 + 230245691 230252191 L1PA7 6471 + 0 6459 2529 404 3 0 575 0 13 165 1 3 660 0 2 109 0 3 95 0 1 489 0 2 118 10 12 1279 0 1 167 67 0 44 0 3 166 0 3 402 0 2 50 0 1 55 2 1 796 4 0 82 1 0 756 chain 3985 chr2 243199373 + 230261689 230261733 LTR47A 437 + 386 430 207624 44 chain 3761 chr2 243199373 + 230272572 230272646 MIR 256 - 70 145 210944 30 3 12 7 8 0 26 chain 29670 chr2 243199373 + 230295023 230295403 MLT2A1 477 + 2 379 85955 168 4 1 8 0 1 24 0 1 8 3 1 165 chain 14304 chr2 243199373 + 230296354 230296511 L1PA3long 6157 + 6000 6157 143553 157 chain 4226 chr2 243199373 + 230355008 230355240 L1MB7 1623 + 1394 1583 204212 25 56 34 25 1 0 13 96 76 16 chain 6337 chr2 243199373 + 230365582 230365674 L1PB1 5432 - 136 225 182493 16 1 0 43 1 0 16 2 1 13 chain 5207 chr2 243199373 + 230365699 230366027 L1MA8 2339 + 1979 2262 192941 28 4 3 25 134 93 21 18 24 19 55 47 18 1 0 5 chain 27341 chr2 243199373 + 230371237 230371549 L1PA5 6144 - 0 313 95140 190 0 1 122 chain 7158 chr2 243199373 + 230376711 230376816 L1PB1 5432 + 5047 5149 176349 56 1 2 9 3 0 22 1 0 13 chain 9275 chr2 243199373 + 230402483 230402590 L1PA2 6032 - 11 118 164186 107 chain 9325 chr2 243199373 + 230406186 230406292 MER85 139 + 10 116 163918 106 chain 25086 chr2 243199373 + 230413022 230413311 L1PA7 6471 + 6024 6313 104372 289 chain 11731 chr2 243199373 + 230413321 230413464 L1PA7 6471 + 6322 6465 153341 143 chain 21261 chr2 243199373 + 230416371 230416652 AluSx3 311 + 4 288 122989 128 12 11 7 0 3 102 0 1 32 chain 5756 chr2 243199373 + 230429686 230429829 MLT1A0 366 - 198 340 187593 55 61 60 27 chain 9562 chr2 243199373 + 230468026 230468130 L1PA4 6152 + 6039 6143 162769 104 chain 25944 chr2 243199373 + 230478610 230478904 L1PA4 6152 + 5859 6152 100234 143 1 0 150 chain 26319 chr2 243199373 + 230490636 230490934 AluYk4 311 - 13 311 98745 298 chain 21729 chr2 243199373 + 230518700 230518966 L1PA5 6144 - 16 284 121282 113 1 0 12 0 3 140 chain 67023 chr2 243199373 + 230533295 230534071 L1PA7 6471 + 5669 6449 49647 498 0 4 278 chain 1819 chr2 243199373 + 230557731 230557878 THE1C 375 + 0 144 93568 125 3 0 19 chain 6323 chr2 243199373 + 230558026 230558106 THE1C 375 + 294 373 182614 56 1 0 23 chain 112385 chr2 243199373 + 230558108 230559637 THE1C-int 1605 + 0 1605 33564 14 2 1 52 11 86 17 10 7 152 0 6 105 10 17 217 0 1 30 1 0 4 6 7 36 6 0 394 6 3 14 8 7 396 0 1 38 chain 5453 chr2 243199373 + 230559637 230559700 THE1C 375 + 0 63 190498 63 chain 2870 chr2 243199373 + 230559749 230559981 THE1C 375 + 144 375 93568 206 1 0 25 chain 96780 chr2 243199373 + 230593564 230594664 L1PA5 6144 + 5021 6138 37622 499 0 8 149 0 6 319 0 2 110 0 1 23 chain 168933 chr2 243199373 + 230606859 230608845 SVA_D 2077 + 0 2064 22171 8 11 0 15 4 14 505 0 40 141 0 1 132 28 22 25 1 0 13 3 1 26 6 0 6 4 0 3 1 0 50 0 1 33 0 2 50 1 0 125 3 0 139 0 49 328 0 10 325 chain 2191 chr2 243199373 + 230607675 230607703 SVA_D 2077 + 896 1061 76216 21 0 137 7 chain 27449 chr2 243199373 + 230627272 230627569 AluYf5 307 - 10 307 94821 297 chain 23406 chr2 243199373 + 230635360 230635718 THE1B 368 + 0 368 113618 18 0 1 4 3 1 143 2 1 29 1 0 4 29 42 125 chain 10013 chr2 243199373 + 230658466 230658670 MER30 238 + 0 231 160520 15 0 40 7 39 0 28 11 36 13 1 0 34 0 2 56 chain 12096 chr2 243199373 + 230692469 230692661 MER30 238 + 36 238 151809 73 1 29 27 15 0 34 3 0 39 chain 11676 chr2 243199373 + 230694974 230695113 MER85 139 - 0 139 153575 139 chain 116969 chr2 243199373 + 230715252 230716658 LTR12C 1709 + 0 1709 32138 17 0 1 259 5 6 153 2 3 257 0 286 94 0 4 32 1 0 6 2 0 42 1 0 64 0 4 95 0 2 192 0 8 184 chain 12926 chr2 243199373 + 230803763 230803933 AluSp 311 - 3 310 148522 28 0 3 108 1 135 33 chain 239805 chr2 243199373 + 230830099 230832805 L1PA5 6144 - 7 2713 16787 252 1 0 73 1 2 138 4 0 618 1 0 523 0 4 749 0 1 346 chain 30832 chr2 243199373 + 230857670 230858067 MER4E1 777 + 0 419 82805 24 0 1 55 1 3 233 13 32 71 chain 27864 chr2 243199373 + 230916653 230916950 AluYg6 310 - 13 310 93479 297 chain 7821 chr2 243199373 + 230922947 230923040 HY4 93 - 0 93 172183 93 chain 13513 chr2 243199373 + 230959218 230959505 L1PB1 5432 - 118 396 146310 12 1 0 6 2 0 15 1 0 44 1 0 16 2 1 53 1 0 5 24 24 25 41 39 38 chain 22336 chr2 243199373 + 230965525 230965842 L1MA2 4263 - 150 457 118754 8 1 0 41 24 17 81 1 0 8 1 0 152 chain 109691 chr2 243199373 + 230968280 230969549 L1PA7 6471 - 1 1269 34281 849 1 0 419 chain 30996 chr2 243199373 + 230969649 230970041 MLT2A2 560 - 161 552 82524 190 15 14 187 chain 92104 chr2 243199373 + 230970748 230972123 L1M1 2793 - 95 1468 38936 13 2 3 9 1 0 52 2 1 187 2 0 14 0 1 200 33 29 67 31 21 271 6 10 156 3 0 187 33 36 47 1 4 19 0 6 13 1 3 10 1 0 14 chain 513220 chr2 243199373 + 230976787 230982968 L1PA6 6164 - 9 6164 5861 825 0 1 471 3 0 56 1 0 436 0 4 214 0 1 354 1 2 93 3 0 209 31 5 293 0 1 604 0 4 77 0 1 60 0 3 107 17 0 1530 0 17 218 1 0 120 9 1 32 1 0 5 13 14 397 chain 18770 chr2 243199373 + 230983360 230983587 HERVL-int 5654 - 2322 2547 130774 104 7 5 116 chain 33622 chr2 243199373 + 230984303 230984731 MLT2A1 477 + 0 477 78206 140 0 1 27 1 5 212 0 44 48 chain 212085 chr2 243199373 + 230984745 230987316 HERVL-int 5654 + 3062 5654 18354 51 0 1 109 11 9 103 1 4 272 3 7 294 0 2 48 1 2 8 0 6 8 11 0 15 1 2 813 0 1 618 0 3 139 5 0 14 0 17 46 chain 32887 chr2 243199373 + 230987316 230987995 MLT2A1 477 + 0 467 79385 142 0 1 25 1 5 184 5 9 18 18 0 13 217 20 6 6 0 44 chain 12655 chr2 243199373 + 230996954 230997230 THE1B 368 + 0 292 149627 44 37 47 17 8 9 52 1 0 25 32 39 9 1 0 50 chain 45837 chr2 243199373 + 230997974 230998588 THE1B-int 1605 - 0 641 62189 9 0 1 62 0 1 66 2 7 273 4 11 142 12 25 44 chain 29035 chr2 243199373 + 231013987 231014295 AluYg6 310 - 2 310 88831 308 chain 4487 chr2 243199373 + 231018683 231018734 L1ME1 1623 - 898 949 200930 51 chain 216491 chr2 243199373 + 231051454 231057928 L1PB3 3668 - 73 3646 18088 13 2 1 12 13 12 28 3 1 25 1 0 3 2 0 16 23 7 85 1 2 99 1 0 276 0 1 12 27 33 295 8 7 11 70 70 249 4 5 26 0 1 52 0 3 143 18 10 63 0 3 11 1 0 100 20 23 120 1 0 5 0 1 5 28 28 81 0 1 53 0 1 4 0 6 33 0 1 86 0 274 109 1 0 116 0 1 5 3 1 79 0 2 21 15 22 24 0 15 95 3 0 146 1 0 86 3189 0 27 0 1 52 0 22 142 1 0 95 3 0 7 1 0 5 1 0 16 8 1 32 12 7 4 1 0 11 2 0 32 chain 117188 chr2 243199373 + 231054319 231055816 L1PA8A 6298 - 16 1498 32063 336 20 10 378 17 15 53 2 1 497 0 1 166 3 0 25 chain 137125 chr2 243199373 + 231055816 231057461 L1PA8A 6298 + 3136 4794 26613 228 0 1 54 0 4 23 0 3 31 0 1 11 1 0 205 5 4 4 0 1 27 0 1 72 1 0 73 1 0 188 0 1 493 0 1 126 0 4 102 chain 115105 chr2 243199373 + 231061254 231062529 L1PA4 6152 - 0 1270 32755 6 5 0 1264 chain 10731 chr2 243199373 + 231103941 231104128 MER2 342 - 13 206 157273 26 23 26 55 7 6 27 0 4 49 chain 56032 chr2 243199373 + 231120765 231121394 L1PA5 6144 + 5511 6141 55098 478 0 1 151 chain 408891 chr2 243199373 + 231123856 231129571 L1PB1 5432 - 30 5352 9835 10 2 1 21 1 0 24 2 0 10 12 9 19 24 12 16 1 0 43 1 0 18 1 0 50 420 66 288 3 4 29 1 2 65 1 0 94 3 0 418 1 2 83 0 2 176 0 1 37 0 1 54 1 0 108 27 16 834 0 3 44 1 0 255 1 6 61 0 1 93 6 0 139 23 15 731 0 4 119 9 8 15 6 0 787 1 2 199 0 1 4 1 0 322 chain 23074 chr2 243199373 + 231136686 231137004 L1PA13 3608 + 3128 3437 115281 31 2 1 32 0 1 5 1 0 74 4 0 63 1 0 56 1 0 5 2 0 41 chain 27260 chr2 243199373 + 231137050 231137423 THE1B 368 + 0 368 95403 148 1 0 24 1 0 28 2 0 100 0 1 5 8 6 56 chain 70290 chr2 243199373 + 231153246 231154127 L1PA7 6471 - 18 948 48274 38 3 44 55 4 5 27 2 3 276 0 2 301 0 2 83 0 3 15 1 0 76 chain 251884 chr2 243199373 + 231164685 231168683 L1PBa 3878 + 48 3737 16133 12 3 0 3 1 0 12 55 47 13 64 18 11 3 1 32 168 19 21 2 0 211 0 1 74 1 0 72 0 2 190 0 1 6 1 0 172 0 7 10 6 5 72 5 10 135 8 10 41 27 35 15 4 1 107 2 3 154 0 1 20 0 1 4 1 0 5 0 1 150 5 9 228 0 4 39 281 0 156 0 1 522 0 2 333 15 16 10 4 0 148 6 158 96 0 1 239 2 1 21 chain 16114 chr2 243199373 + 231172754 231173102 L1PB1 5432 + 5114 5430 138013 23 1 0 9 1 0 12 5 1 9 3 1 50 5 4 14 1 0 44 7 6 10 3 0 11 8 0 18 13 10 10 3 1 26 2 1 18 1 0 9 1 0 17 1 0 8 1 0 4 chain 43420 chr2 243199373 + 231184965 231185476 L1PA5 6144 - 2 505 64908 7 4 0 164 4 0 332 chain 493032 chr2 243199373 + 231201784 231207228 L1HS 6032 - 577 6026 7223 2394 0 1 474 0 5 2325 2 1 249 chain 3192 chr2 243199373 + 231227023 231227093 MER21C 908 - 835 905 221081 20 24 24 26 chain 3560 chr2 243199373 + 231233480 231233545 L1M1 2793 - 1641 1709 214331 28 1 5 10 3 0 14 0 2 9 chain 3036 chr2 243199373 + 231263574 231263621 LTR53 516 - 276 324 224280 25 3 4 19 chain 51379 chr2 243199373 + 231278044 231278721 MER51A 677 - 16 677 58041 77 8 0 385 32 23 17 0 1 158 chain 37384 chr2 243199373 + 231303003 231304252 L1PB1 5432 - 2 1694 72981 5 1 0 7 1 0 25 1 0 23 1 0 24 2 0 15 8 5 14 20 10 6 2 0 15 1 0 45 1 0 15 11 11 41 22 16 9 1 0 6 1 0 23 5 0 9 601 1080 137 1 0 144 0 1 6 chain 30558 chr2 243199373 + 231325319 231325637 AluYb8 318 - 0 318 83314 318 chain 7822 chr2 243199373 + 231346673 231346764 L1PA2 6032 - 4 93 172176 7 2 0 82 chain 10966 chr2 243199373 + 231350727 231350880 THE1D 372 - 0 151 156337 56 8 5 38 0 1 51 chain 405092 chr2 243199373 + 231350951 231356338 L1PA8A 6298 - 11 5925 9941 119 3 9 278 2 0 311 5 7 64 1 5 240 7 8 45 1 0 244 4 1 137 10 0 423 2 0 5 0 2 241 335 0 276 1 2 168 1 0 4 0 1 316 1 9 423 0 1 247 1 21 290 0 2 16 0 2 174 1 0 6 5 9 142 0 2 121 0 13 261 0 822 12 4 0 28 5 2 89 10 14 161 1 0 79 6 4 9 1 0 6 9 7 36 chain 4370 chr2 243199373 + 231356459 231356510 THE1D 372 - 319 370 202320 51 chain 3701 chr2 243199373 + 231361235 231361319 MADE1 96 - 1 94 211924 22 31 40 31 chain 25556 chr2 243199373 + 231377362 231377724 MER1A 529 - 39 386 101948 28 2 0 3 3 0 5 2 0 73 9 1 237 chain 65158 chr2 243199373 + 231387807 231390112 LOR1-int 1871 + 78 1569 50497 10 12 0 64 18 20 20 52 44 20 3 1 29 1 0 49 182 33 27 5 4 28 308 0 123 356 0 27 15 26 16 5 6 56 0 1 39 5 6 20 69 109 33 2 0 18 0 1 89 10 7 82 1 0 1 1 0 9 3 0 34 1 0 97 33 33 10 20 19 60 19 4 19 14 13 31 0 11 7 105 88 47 chain 499338 chr2 243199373 + 231390158 231396252 L1PA6 6164 + 1 6152 6868 222 37 53 173 8 0 120 1 0 218 0 17 268 0 1 198 10 0 942 0 2 118 0 1 40 5 0 4 2 0 83 1 3 382 0 1 53 0 1 283 5 6 333 0 1 426 0 1 17 2 0 1199 0 1 127 1 5 11 0 5 74 1 3 550 0 1 68 1 0 32 4 33 75 chain 23317 chr2 243199373 + 231398843 231399128 AluY 311 + 3 290 114111 115 1 2 6 0 1 163 chain 4591 chr2 243199373 + 231411061 231411165 MER34C_ 573 - 7 103 199738 9 1 0 20 30 19 36 0 4 8 chain 38286 chr2 243199373 + 231412705 231413583 PRIMA4_LTR 623 + 0 623 71733 88 2 3 86 15 11 19 304 0 111 0 56 51 0 5 7 0 1 4 14 0 97 29 33 51 chain 73847 chr2 243199373 + 231417490 231418428 L1PA10 4194 + 3211 4146 46590 413 0 2 406 12 12 61 4 2 10 3 0 29 chain 40675 chr2 243199373 + 231438672 231439209 MSTA-int 1630 - 1092 1630 68331 105 10 8 5 0 2 403 0 1 14 chain 26353 chr2 243199373 + 231445979 231446266 AluYf4 310 + 0 287 98604 287 chain 530013 chr2 243199373 + 231468062 231474843 L1PA7 6471 + 0 6467 4186 167 15 21 218 7 6 236 2 1 6 0 1 936 0 8 169 0 20 115 1 0 233 1 0 6 0 1 497 1 0 608 22 7 289 9 13 445 11 0 319 12 1 162 316 0 40 0 4 768 0 1 73 0 1 230 0 4 8 0 3 328 15 4 358 3 5 4 1 0 142 0 1 8 chain 500456 chr2 243199373 + 231483977 231490447 L1PA6 6164 + 0 6149 6809 227 3 1 217 13 5 117 1 0 220 0 17 126 7 8 344 3 5 574 8 1 306 1 0 114 1 2 46 1 0 44 5 0 4 2 0 466 335 5 340 0 1 49 0 5 107 2 0 352 2 0 662 0 4 280 1 0 4 0 1 66 0 1 181 1 0 265 0 5 182 0 2 131 1 2 64 0 1 438 1 20 8 19 0 129 chain 29404 chr2 243199373 + 231486838 231487153 AluYb8 318 + 0 315 87046 315 chain 24416 chr2 243199373 + 231510303 231510599 AluSx 319 - 23 319 107994 296 chain 44894 chr2 243199373 + 231512296 231512849 MER41A 554 + 0 554 63183 97 0 1 220 0 1 59 4 3 173 chain 21503 chr2 243199373 + 231515983 231516616 MER51B 395 - 10 395 122136 128 7 8 4 1 0 41 313 5 36 0 73 48 13 0 42 chain 33817 chr2 243199373 + 231517419 231517890 LTR10F 562 + 0 562 77911 81 0 5 22 0 56 36 0 31 25 7 0 10 31 37 259 chain 22755 chr2 243199373 + 231519148 231519484 MER51B 395 - 19 395 116806 119 1 2 80 1 14 50 19 19 30 0 26 36 chain 42257 chr2 243199373 + 231519576 231520431 MER41A 554 + 0 554 66322 91 1 2 53 9 6 162 0 1 77 0 7 36 312 0 33 0 5 81 chain 21634 chr2 243199373 + 231538255 231538523 AluSp 311 + 9 293 121640 156 1 17 111 chain 37958 chr2 243199373 + 231538599 231539061 LTR2 463 + 0 463 72196 362 12 13 88 chain 10234 chr2 243199373 + 231553539 231553668 MER85 139 + 0 139 159450 89 0 10 40 chain 11091 chr2 243199373 + 231560566 231560715 L1PA6 6164 - 2 151 155835 6 2 0 94 5 7 42 chain 30978 chr2 243199373 + 231567267 231567937 L1M1 2793 - 1513 2132 82552 7 8 0 24 0 4 60 6 5 177 1 0 58 12 15 29 14 11 37 57 54 23 123 81 34 chain 10246 chr2 243199373 + 231587044 231587170 AluJo 314 - 187 313 159391 126 chain 24175 chr2 243199373 + 231604219 231604498 AluSp 311 - 21 301 109344 25 0 1 254 chain 6826 chr2 243199373 + 231616855 231616939 U6 107 + 0 84 178742 84 chain 52015 chr2 243199373 + 231619560 231620337 L1PB1 5432 - 129 934 57618 7 3 0 16 1 0 43 1 0 15 4 2 50 27 24 8 1 0 24 1 0 11 24 1 50 2 69 216 9 8 45 1 0 84 3 0 124 0 1 7 chain 281432 chr2 243199373 + 231666824 231670122 L1PA6 6164 + 2846 6162 14568 224 9 13 101 5 6 81 0 2 430 0 3 656 0 4 147 0 4 385 1 0 260 1 6 147 1 0 642 3 0 55 1 0 4 0 1 145 chain 2817 chr2 243199373 + 231688670 231688704 LTR16C 481 + 447 481 228501 34 chain 33572 chr2 243199373 + 231696978 231697411 MER57A1 433 + 0 433 78282 187 0 2 82 9 4 6 0 3 149 chain 71422 chr2 243199373 + 231708353 231709311 LTR5_Hs 974 - 0 974 47737 62 1 0 5 0 1 11 0 2 22 2 9 7 9 0 21 8 15 163 1 0 162 15 15 11 0 1 177 0 1 161 5 13 115 chain 12898 chr2 243199373 + 231715525 231715668 L1PA3long 6157 + 6004 6153 148641 100 0 6 43 chain 24000 chr2 243199373 + 231800951 231801330 THE1C 375 + 0 374 110332 60 34 26 94 5 6 18 6 8 35 10 11 91 1 0 25 chain 3689 chr2 243199373 + 231827259 231827326 MLT1C 463 - 341 404 212105 13 12 8 42 chain 16832 chr2 243199373 + 231828634 231828890 LTR12C 1709 - 506 777 136037 46 42 10 14 0 47 154 chain 2493 chr2 243199373 + 231828680 231828707 LTR12C 1709 - 996 1023 199437 27 chain 2988 chr2 243199373 + 231837824 231837858 MSTA 426 + 380 414 225273 34 chain 3326 chr2 243199373 + 231850496 231850536 MLT2C2 476 - 2 42 218473 40 chain 5082 chr2 243199373 + 231870034 231870297 HAL1-2a_MD 234 + 9 137 194277 32 181 49 29 3 0 18 chain 3717 chr2 243199373 + 231896368 231896518 MER3 215 + 47 198 211666 33 91 92 26 chain 10465 chr2 243199373 + 231897818 231897958 MER85 139 + 0 139 158412 101 5 4 34 chain 23622 chr2 243199373 + 231900422 231900710 AluSp 311 - 23 311 112455 288 chain 23089 chr2 243199373 + 231903776 231904035 L1PA4 6152 + 5879 6138 115201 259 chain 5286 chr2 243199373 + 231942182 231942256 MER51E 476 + 304 377 192153 31 2 1 41 chain 29450 chr2 243199373 + 231954328 231954709 MLT2A1 477 - 92 477 86849 62 2 1 99 0 1 49 6 10 163 chain 266621 chr2 243199373 + 231956185 231960782 HERVK22-int 3844 - 6 3843 15357 57 34 33 74 0 1 4 856 241 18 90 67 5 2 0 5 2 0 12 1 0 4 37 25 41 19 14 39 2 0 21 1 0 35 1 0 18 7 5 72 1 0 160 76 0 516 0 4 96 2 1 36 0 7 253 0 1 62 37 0 222 2 0 7 5 6 78 0 3 207 0 8 9 8 0 63 1 0 116 0 1 167 1 2 416 7 12 15 0 1 293 0 3 239 3 0 42 chain 37023 chr2 243199373 + 231961295 231961759 LTR10F 562 - 8 562 73488 277 5 11 12 0 52 20 1 29 116 0 4 33 chain 36861 chr2 243199373 + 231964885 231965407 LTR10F 562 - 8 562 73718 48 0 1 160 0 1 65 7 13 13 0 24 7 28 0 45 0 28 149 chain 7313 chr2 243199373 + 231966869 231966958 Tigger1 2417 + 2257 2346 175351 89 chain 29450 chr2 243199373 + 231996195 231996504 AluYa5 310 + 1 310 86836 309 chain 11701 chr2 243199373 + 232002444 232002590 L1PA16 3655 - 95 241 153465 146 chain 21769 chr2 243199373 + 232027570 232027828 AluY 311 + 41 296 121134 92 1 0 121 2 0 42 chain 11413 chr2 243199373 + 232032424 232032649 L1MB7 1623 + 946 1172 154624 42 33 32 17 1 0 4 15 18 49 1 0 40 0 1 23 chain 24719 chr2 243199373 + 232036263 232036569 AluSp 311 - 6 311 106333 47 4 3 255 chain 3038 chr2 243199373 + 232060311 232060343 MLT1K 546 - 12 44 224233 32 chain 29221 chr2 243199373 + 232067507 232067883 LTR19B 566 + 181 566 87951 92 0 4 214 0 9 11 0 3 32 7 0 20 chain 3383 chr2 243199373 + 232088731 232088766 MER66B 489 - 159 194 217426 35 chain 14825 chr2 243199373 + 232129850 232130095 L1PB2 3958 + 3590 3838 141859 27 1 0 64 11 10 64 29 34 49 chain 5764 chr2 243199373 + 232189561 232189630 FLAM_A 137 + 57 126 187498 69 chain 20369 chr2 243199373 + 232202175 232202419 AluYa5 310 - 5 250 126002 172 1 2 71 chain 56573 chr2 243199373 + 232213185 232214006 L1MA2 4263 + 3303 4114 54809 137 0 2 139 10 5 76 1 0 23 0 2 122 3 0 119 38 37 93 17 13 27 0 1 6 1 0 9 chain 81227 chr2 243199373 + 232240577 232241632 MER11C 1089 + 0 1063 43073 98 1 0 148 0 9 62 0 4 64 1 0 131 1 0 18 40 34 4 1 0 118 0 4 43 0 1 127 0 1 54 1 0 143 chain 43471 chr2 243199373 + 232265422 232265917 LTR2C 499 + 0 499 64844 175 1 4 261 0 1 58 chain 286402 chr2 243199373 + 232267022 232270403 HERVE-int 4064 + 0 3359 14264 521 1 0 289 0 1 149 0 1 4 1 0 568 26 1 836 3 5 690 0 1 293 chain 43856 chr2 243199373 + 232273062 232273554 LTR2C 499 + 6 499 64378 434 0 1 58 chain 25065 chr2 243199373 + 232284515 232284822 AluY 311 + 0 303 104478 118 3 0 15 2 0 11 5 6 153 chain 19903 chr2 243199373 + 232286853 232287178 MLT1B 390 - 0 390 127472 64 1 0 15 59 126 54 1 0 131 chain 29760 chr2 243199373 + 232294691 232295138 LTR7C 471 - 0 449 85603 28 71 72 263 0 1 85 chain 33675 chr2 243199373 + 232295139 232295596 LTR7B 505 + 0 505 78138 93 0 31 84 7 5 14 4 25 189 14 13 20 0 1 11 2 0 19 chain 34509 chr2 243199373 + 232296662 232297105 HERVH-int 3825 - 0 440 76891 64 1 0 296 26 24 56 chain 34371 chr2 243199373 + 232300252 232302764 L1PA16 3655 - 63 624 77103 14 3 0 116 0 1 45 5 0 125 2 0 36 2011 69 155 chain 22919 chr2 243199373 + 232305713 232305988 AluSp 311 - 27 302 116017 275 chain 4867 chr2 243199373 + 232334814 232334866 L1PA3long 6157 + 6104 6156 196624 52 chain 6038 chr2 243199373 + 232339332 232339419 L1MB2 1706 + 1598 1694 184904 13 1 0 48 0 10 25 chain 71841 chr2 243199373 + 232354261 232355248 LTR13 1007 - 0 1007 47542 31 3 1 62 0 5 92 0 1 118 3 11 79 1 3 66 4 0 25 12 32 7 0 3 41 15 3 41 4 5 313 8 6 62 chain 5237 chr2 243199373 + 232363773 232363843 L1MB8 1703 - 1035 1111 192641 22 0 1 33 0 5 15 chain 5618 chr2 243199373 + 232366841 232366908 U2 167 - 99 167 188884 27 0 1 40 chain 3198 chr2 243199373 + 232376600 232376635 U6 107 - 72 107 220949 35 chain 52356 chr2 243199373 + 232402913 232403530 SVA_A 1864 - 2 591 57393 535 45 17 37 chain 6038 chr2 243199373 + 232405901 232405978 Tigger2 2703 + 2578 2655 184913 77 chain 4863 chr2 243199373 + 232412112 232412173 MLT2C1 407 + 40 101 196654 61 chain 23790 chr2 243199373 + 232434243 232434602 LTR7 482 + 0 482 111529 31 34 123 70 0 1 31 0 32 131 15 16 47 chain 23509 chr2 243199373 + 232436335 232436707 MER4D 903 - 531 903 113078 96 1 5 43 0 1 78 41 39 35 1 0 25 1 0 25 1 0 25 chain 73049 chr2 243199373 + 232441494 232442454 LTR5_Hs 974 + 0 974 47004 115 5 13 161 0 1 171 6 7 188 1 0 163 8 15 19 20 18 103 chain 21684 chr2 243199373 + 232463177 232463454 AluSq 315 + 22 300 121450 114 21 22 142 chain 24125 chr2 243199373 + 232475548 232475840 AluSx1 309 + 8 301 109617 116 0 1 176 chain 2845 chr2 243199373 + 232510984 232511028 MER47B 469 + 406 449 227942 16 2 1 26 chain 25699 chr2 243199373 + 232542832 232543142 AluSp 311 - 1 311 101289 310 chain 23799 chr2 243199373 + 232546688 232546989 AluSc5 308 + 0 302 111484 124 3 4 174 chain 5030 chr2 243199373 + 232576235 232576294 U4 144 + 1 60 194823 59 chain 25546 chr2 243199373 + 232599269 232599589 AluY 311 + 0 311 102010 133 6 1 171 4 0 6 chain 25420 chr2 243199373 + 232609139 232609443 AluSp 311 - 7 311 102591 59 0 1 226 1 0 18 chain 6278 chr2 243199373 + 232611157 232611232 MER30 238 + 163 238 182955 75 chain 12362 chr2 243199373 + 232612602 232612776 THE1A 353 + 184 353 150789 108 15 10 51 chain 118771 chr2 243199373 + 232612776 232614667 THE1A-int 1579 + 0 1573 31505 25 1 0 144 2 1 5 0 1 9 18 34 126 0 3 123 0 4 226 0 5 11 0 2 150 11 14 199 0 3 359 358 5 124 chain 21030 chr2 243199373 + 232614672 232615013 THE1A 353 + 0 353 123811 79 7 6 24 25 31 84 0 3 68 0 1 4 15 18 35 chain 5627 chr2 243199373 + 232622596 232622660 U6 107 + 0 64 188795 64 chain 29252 chr2 243199373 + 232655441 232655747 AluYb9 318 - 12 318 87784 306 chain 4348 chr2 243199373 + 232687447 232687496 MER20 218 + 95 144 202614 49 chain 7859 chr2 243199373 + 232718462 232718567 L1MD2 1676 - 22 126 171945 48 1 0 56 chain 24026 chr2 243199373 + 232753084 232753402 AluSx1 309 + 9 309 110184 70 8 1 48 3 0 29 8 0 152 chain 17779 chr2 243199373 + 232762713 232762941 AluSq2 311 + 72 299 133484 188 0 1 31 2 0 7 chain 2876 chr2 243199373 + 232812582 232812615 MIRb 242 - 105 138 227416 33 chain 21808 chr2 243199373 + 232824862 232825147 AluSc8 310 + 0 307 120993 44 18 34 53 0 4 46 0 2 124 chain 6707 chr2 243199373 + 232885378 232885525 MIR 256 + 14 183 179632 23 39 59 38 6 8 41 chain 530823 chr2 243199373 + 232896212 232902688 L1PA7 6471 - 1 6455 4106 147 30 29 294 8 0 297 0 1 73 0 7 332 0 11 322 0 3 56 0 2 74 0 4 13 0 3 123 5 13 240 0 1 119 8 11 458 1 0 103 7 10 227 1 0 332 0 1 265 39 8 250 0 1 291 2 0 161 0 1 174 28 6 8 0 1 101 0 3 498 0 1 433 14 1 350 0 2 197 0 1 395 chain 54203 chr2 243199373 + 232956662 232960053 L1MA3 4352 - 1170 4290 56229 117 8 9 129 2547 2280 28 4 0 444 1 0 7 0 1 12 1 0 15 1 0 11 12 13 54 chain 183073 chr2 243199373 + 232971062 232973875 L1PA11 4918 + 1308 3779 20675 43 14 15 67 42 0 170 0 4 66 4 0 142 29 27 405 1 0 35 4 10 43 314 14 177 0 4 52 1 13 27 0 2 19 0 1 131 1 0 36 0 10 187 2 0 110 32 5 75 0 1 42 5 0 424 0 1 113 chain 20062 chr2 243199373 + 232980250 232980592 THE1D 372 + 0 372 126938 51 14 24 93 0 4 10 8 11 28 15 28 31 5 6 50 2 1 35 chain 563650 chr2 243199373 + 233013906 233019939 L1HS 6032 - 0 6032 248 341 0 1 4294 4 2 1394 chain 20375 chr2 243199373 + 233031152 233031419 AluSc 308 + 0 274 125975 18 1 0 35 11 19 202 chain 442534 chr2 243199373 + 233041519 233046319 L1PA2 6032 - 7 4801 8977 6 2 0 494 2 0 4129 4 2 163 chain 23832 chr2 243199373 + 233066839 233067130 AluSc 308 + 12 292 111296 272 11 0 8 chain 3379 chr2 243199373 + 233116349 233116623 HAL1 992 + 284 573 217507 32 179 196 19 26 24 18 chain 21259 chr2 243199373 + 233166863 233167109 L1PA5 6144 + 5900 6144 122995 235 2 0 9 chain 27827 chr2 243199373 + 233178400 233178764 THE1B 368 - 0 366 93596 195 2 1 130 0 5 24 2 0 11 chain 542670 chr2 243199373 + 233219950 233225955 L1PA3long 6157 + 0 6156 2399 152 0 1 604 0 2 17 0 128 618 4 2 329 0 5 929 0 4 375 0 2 2031 0 8 100 1 0 27 0 4 818 chain 85595 chr2 243199373 + 233230866 233231844 LTR12C 1709 + 0 1095 41309 36 1 0 614 0 119 68 1 0 258 chain 82127 chr2 243199373 + 233287702 233288675 LTR5_Hs 974 + 0 974 42712 261 18 0 25 0 6 246 1 2 11 0 1 272 0 7 42 2 0 15 0 6 80 chain 22105 chr2 243199373 + 233398326 233398590 AluSc 308 + 19 284 119757 171 0 1 93 chain 184646 chr2 243199373 + 233412615 233414900 Tigger1 2417 - 1 2309 20530 46 1 18 13 6 5 72 0 2 5 2 0 51 8 7 1855 12 13 28 30 37 156 chain 14320 chr2 243199373 + 233423788 233423945 L1PA2 6032 + 5875 6032 143494 157 chain 30890 chr2 243199373 + 233461429 233461778 L1PA5 6144 + 5796 6142 82699 333 3 0 13 chain 26422 chr2 243199373 + 233484816 233485113 AluYk4 311 + 0 297 98331 297 chain 3307 chr2 243199373 + 233510482 233510518 MIR 256 - 117 153 218820 36 chain 23184 chr2 243199373 + 233536492 233536780 AluSz6 309 + 8 297 114755 195 5 6 88 chain 24053 chr2 243199373 + 233560571 233560849 AluSp 311 - 21 300 110027 234 0 1 44 chain 51310 chr2 243199373 + 233584623 233585274 L1PA6 6164 - 2 621 58101 62 2 0 3 34 0 327 0 4 223 chain 23169 chr2 243199373 + 233588437 233588743 AluSp 311 - 7 311 114816 140 18 14 18 2 0 37 0 4 91 chain 11759 chr2 243199373 + 233628068 233628252 MER44A 345 - 34 220 153227 38 39 41 107 chain 5851 chr2 243199373 + 233647374 233647444 U6 107 + 0 73 186673 47 0 3 23 chain 4174 chr2 243199373 + 233661136 233661247 Tigger4a 237 + 3 122 204927 42 46 54 23 chain 27965 chr2 243199373 + 233668381 233668676 AluYb8 318 - 3 298 93124 295 chain 6329 chr2 243199373 + 233681351 233681440 L1MB3 1562 - 269 352 182544 46 6 0 37 chain 69482 chr2 243199373 + 233690436 233691225 L1PA6 6164 - 18 809 48616 70 0 1 368 0 2 203 1 0 147 chain 16767 chr2 243199373 + 233691225 233691435 L1PA6 6164 + 5131 5349 136202 32 0 5 69 3 2 79 0 4 27 chain 16353 chr2 243199373 + 233691691 233691893 Tigger1 2417 + 960 1164 137332 154 0 2 48 chain 158731 chr2 243199373 + 233769816 233771886 SVA_D 2077 + 42 2077 23498 4 1 0 5 0 1 5 3 0 643 0 77 131 2 0 8 3 1 26 45 5 87 0 1 6 97 0 44 2 0 97 49 0 134 0 1 16 0 98 60 37 0 431 0 20 134 chain 3415 chr2 243199373 + 233770647 233770692 SVA_D 2077 + 1130 1175 76526 45 chain 3527 chr2 243199373 + 233770785 233770837 SVA_D 2077 + 1043 1095 90641 52 chain 3415 chr2 243199373 + 233770837 233770882 SVA_D 2077 + 1299 1345 76526 8 0 1 37 chain 3323 chr2 243199373 + 233771025 233771074 SVA_D 2077 + 1310 1359 90641 7 0 1 22 1 0 19 chain 3216 chr2 243199373 + 233771284 233771321 SVA_D 2077 + 1267 1304 108433 37 chain 8311 chr2 243199373 + 233789080 233789183 MLT1A0 366 + 244 347 169336 103 chain 3038 chr2 243199373 + 233794454 233794486 MLT1A0 366 - 16 48 224264 32 chain 18272 chr2 243199373 + 233794486 233794820 THE1B 368 + 0 346 132149 108 15 16 45 1 0 8 23 16 7 1 0 15 15 27 24 0 9 31 7 6 34 chain 21643 chr2 243199373 + 233810616 233811131 L1PB1 5432 + 4997 5420 121603 54 0 10 33 72 9 13 9 0 22 1 0 9 1 0 10 16 10 10 0 1 41 1 0 18 2 1 43 1 0 15 3 0 8 13 4 19 2 0 5 1 0 14 14 12 12 1 0 21 1 0 9 0 1 5 2 0 14 chain 3610 chr2 243199373 + 233832311 233832369 MSTA 426 + 355 414 213478 14 5 6 39 chain 25312 chr2 243199373 + 233865180 233865492 AluY 311 + 1 303 103160 28 6 0 94 6 4 170 2 0 6 chain 8372 chr2 243199373 + 233884266 233884360 L1P1 4361 - 298 392 169011 94 chain 41847 chr2 243199373 + 233884360 233884820 L1PA5 6144 + 5675 6135 66834 460 chain 35422 chr2 243199373 + 233892098 233892554 LTR10F 562 - 0 562 75650 286 4 10 13 0 24 14 0 75 23 1 2 115 chain 23219 chr2 243199373 + 233893461 233894485 MER4D1 891 + 182 884 114608 6 0 2 76 1 3 102 1 0 59 1 0 32 7 25 18 20 24 17 647 301 37 chain 23380 chr2 243199373 + 233964502 233964847 THE1B 368 - 0 368 113761 125 26 42 6 5 0 26 1 0 46 5 18 105 chain 25781 chr2 243199373 + 233967285 233967585 AluY 311 + 9 303 100956 124 1 0 164 5 0 6 chain 4751 chr2 243199373 + 233998326 233998383 MER53 195 + 130 187 197903 57 chain 23140 chr2 243199373 + 234058778 234059142 THE1B 368 + 0 368 114937 64 51 50 55 1 0 29 0 3 8 1 5 16 1 0 138 chain 45787 chr2 243199373 + 234063064 234063635 PABL_A 660 - 0 660 62243 88 1 0 108 0 4 192 0 45 40 0 32 61 0 9 81 chain 5072 chr2 243199373 + 234081878 234081936 Tigger3b 1229 - 288 346 194401 58 chain 24942 chr2 243199373 + 234099693 234100082 THE1C 375 - 0 375 105098 44 0 1 106 0 1 27 18 17 39 35 19 33 0 1 87 chain 27364 chr2 243199373 + 234122270 234124198 LTR7B 505 - 10 505 95066 41 1180 13 76 1 0 85 8 10 20 299 43 12 35 11 66 0 10 15 0 3 90 chain 23438 chr2 243199373 + 234122325 234122689 LTR7B 505 - 64 505 113433 54 0 1 21 1 0 54 1 89 27 46 22 58 0 10 13 0 3 89 chain 29686 chr2 243199373 + 234125971 234126339 HERVH-int 3825 - 0 362 85881 47 14 6 224 0 2 83 chain 6555 chr2 243199373 + 234126355 234126455 LTR7B 505 - 10 109 180813 41 14 13 45 chain 4100 chr2 243199373 + 234129952 234130004 MER53 195 + 143 195 205944 52 chain 25865 chr2 243199373 + 234147278 234147554 AluYb8 318 - 8 284 100587 276 chain 8441 chr2 243199373 + 234218876 234218986 MER33 330 - 35 144 168616 91 1 0 18 chain 5160 chr2 243199373 + 234266487 234266547 MER5A1 166 - 97 157 193451 60 chain 4619 chr2 243199373 + 234278804 234278857 L1MB5 1630 - 169 222 199412 53 chain 12795 chr2 243199373 + 234285271 234285413 L1PA5 6144 + 5823 5964 149072 63 1 0 78 chain 4888 chr2 243199373 + 234326581 234326638 MER20 218 + 161 218 196389 57 chain 75754 chr2 243199373 + 234339605 234340756 L1MA3 4352 + 2217 3322 45618 28 8 3 65 1 0 39 1 0 14 0 4 61 2 0 147 3 1 162 0 11 17 31 21 91 0 2 212 0 5 22 2 7 57 1 2 29 1 0 11 60 8 86 chain 3649 chr2 243199373 + 234357352 234357483 MER51A 677 - 420 481 212816 14 77 7 40 chain 4910 chr2 243199373 + 234421538 234421869 Tigger6a 1079 - 62 400 196165 31 253 260 47 chain 38733 chr2 243199373 + 234425845 234426811 L1PB1 5432 + 4841 5420 71099 167 320 0 95 47 11 24 1 0 9 1 0 9 17 11 52 3 2 16 1 0 44 1 0 15 3 0 15 9 0 16 9 6 13 3 1 23 1 0 21 1 0 13 1 0 16 chain 134406 chr2 243199373 + 234469865 234471356 L1PA3long 6157 + 4647 6142 27131 608 1 0 301 0 5 441 0 7 1 7 0 132 chain 24975 chr2 243199373 + 234481448 234481741 AluSc 308 + 11 303 104932 223 1 0 69 chain 28328 chr2 243199373 + 234485908 234486278 THE1B 368 - 0 368 91838 149 0 1 20 2 0 22 5 4 172 chain 533051 chr2 243199373 + 234486606 234492514 L1PA3long 6157 - 118 6157 3842 480 0 5 302 1 0 2160 0 1 2185 11 139 614 0 1 94 3 0 58 chain 7309 chr2 243199373 + 234502288 234502373 L1PA3long 6157 + 6070 6157 175383 80 0 2 5 chain 374430 chr2 243199373 + 234520724 234525260 L1PA7 6471 - 18 4601 10941 29 1 8 78 0 1 16 2 0 346 2 1 5 0 1 174 0 1 176 0 3 176 1 0 61 1 0 428 1 0 273 9 11 44 1 0 132 0 1 440 7 6 17 24 21 510 9 10 380 0 40 432 0 1 59 0 1 286 2 0 203 0 1 211 chain 149122 chr2 243199373 + 234530380 234532142 L1PA6 6164 - 3 1770 24737 7 2 0 824 0 1 13 0 4 334 0 1 521 0 1 61 chain 372645 chr2 243199373 + 234539484 234544044 L1PA7 6471 - 2 4601 11007 227 33 28 199 0 1 15 0 1 199 1 2 172 0 4 183 1 0 744 4 8 442 5 27 166 6 5 36 5 6 167 0 1 242 0 1 794 0 6 125 1 0 11 0 1 14 1 2 59 1 3 548 0 1 159 chain 27850 chr2 243199373 + 234549505 234549891 MER83 447 + 0 405 93523 58 0 1 5 2 0 65 0 2 91 12 19 72 3 14 78 chain 98184 chr2 243199373 + 234549932 234551411 L1M1 2793 - 604 2064 37234 36 0 1 74 20 24 16 3 2 4 0 1 41 0 1 64 0 1 152 21 25 83 3 1 101 5 7 282 11 4 21 4 0 70 1 0 175 1 0 75 1 0 23 15 12 54 1 0 8 2 0 29 1 0 30 2 0 6 4 1 21 2 0 4 2 0 11 chain 11351 chr2 243199373 + 234553839 234553984 THE1B 368 - 218 366 154893 58 1 3 24 0 1 62 chain 122899 chr2 243199373 + 234553986 234555550 THE1B-int 1605 - 0 1605 30080 8 0 1 70 0 10 140 0 1 25 4 6 260 0 2 4 1 0 371 0 1 249 0 25 432 chain 59626 chr2 243199373 + 234575912 234576591 L1PA4 6152 + 4874 5554 53037 353 5 6 321 chain 54752 chr2 243199373 + 234576706 234577359 L1PA6 6164 - 2 655 55870 145 13 13 495 chain 3166 chr2 243199373 + 234583858 234583895 MSTB1 431 - 376 413 221618 37 chain 54703 chr2 243199373 + 234609370 234609994 L1PA4 6152 - 1 628 55899 199 0 2 5 3 4 417 chain 63109 chr2 243199373 + 234609995 234610693 L1P1 4361 + 2486 3181 51396 679 3 0 16 chain 23798 chr2 243199373 + 234613497 234613795 AluSq10 312 + 0 296 111492 69 14 12 215 chain 3239 chr2 243199373 + 234614422 234614463 MER45A 178 - 29 81 220258 10 0 11 31 chain 151875 chr2 243199373 + 234632172 234633823 SVA_F 1814 - 0 1805 24356 626 2 50 126 0 64 80 0 40 168 0 1 483 0 1 166 chain 511811 chr2 243199373 + 234639936 234646330 L1PA6 6164 - 2 6157 5999 198 0 1 651 5 0 231 19 0 134 0 4 157 1 0 12 0 1 59 9 1 81 0 4 254 0 2 376 0 1 23 4 5 5 1 0 62 0 2 135 0 1 192 2 0 14 217 0 321 10 22 833 0 5 355 0 1 778 4 5 151 9 4 506 16 0 8 1 0 560 chain 15970 chr2 243199373 + 234642568 234642747 L1PA4 6152 + 5957 6136 138455 179 chain 35956 chr2 243199373 + 234650746 234651204 MER9a3 513 - 0 478 74951 79 0 1 158 0 17 78 0 1 68 6 7 69 chain 35145 chr2 243199373 + 234673887 234674326 L1PA8A 6298 + 5815 6255 76002 360 0 8 4 1 0 13 6 0 55 chain 7597 chr2 243199373 + 234688988 234689077 MER5A 189 - 60 149 173562 89 chain 21181 chr2 243199373 + 234715460 234715961 L1PB1 5432 - 5 434 123271 5 2 0 18 1 0 13 17 23 19 20 17 5 2 0 17 18 8 6 3 0 15 1 0 45 1 0 15 2 1 25 0 5 23 2 0 8 2 0 3 2 0 7 1 0 10 2 1 24 1 0 13 52 0 85 0 2 16 chain 27461 chr2 243199373 + 234718844 234719199 THE1A 353 - 0 353 94777 155 1 0 88 1 0 110 chain 19550 chr2 243199373 + 234734287 234734555 L1P3 4156 - 17 281 128517 22 1 0 10 2 0 108 2 1 123 chain 40141 chr2 243199373 + 234765603 234766064 LTR2 463 - 0 463 69123 109 1 0 296 0 3 55 chain 36710 chr2 243199373 + 234784158 234784613 L1PA8 5853 - 0 452 73946 24 0 6 63 1 0 19 2 1 52 1 0 6 1 0 72 4 0 48 2 1 160 chain 10237 chr2 243199373 + 234805089 234805340 L1PB1 5432 + 5181 5392 159439 39 2 1 15 1 0 8 21 0 14 0 2 19 2 1 16 1 0 4 19 8 16 28 23 23 1 0 22 chain 32715 chr2 243199373 + 234846999 234847452 MER4A1 472 - 0 472 79662 197 30 7 19 4 26 175 0 20 28 chain 19911 chr2 243199373 + 234851951 234852168 L1PA4 6152 + 5730 5947 127435 217 chain 9416 chr2 243199373 + 234856999 234857122 MER85 139 + 4 138 163480 80 6 17 37 chain 126685 chr2 243199373 + 234880191 234881676 LTR12C 1709 - 0 1709 28892 168 0 102 63 0 2 146 0 4 106 4 2 4 1 0 275 1 0 15 0 119 402 0 1 300 chain 19061 chr2 243199373 + 234896316 234896666 THE1B 368 + 7 344 129937 99 97 93 111 9 0 34 chain 3527 chr2 243199373 + 234932408 234932496 LTR12C 1709 - 872 960 165270 88 chain 12050 chr2 243199373 + 234932526 234932830 LTR12C 1709 - 506 774 151984 19 14 98 39 76 0 15 44 0 97 chain 1283 chr2 243199373 + 234932602 234932634 LTR12C 1709 - 1026 1058 165270 32 chain 51001 chr2 243199373 + 234947722 234948294 L1PA5 6144 + 5571 6144 58306 239 0 1 333 chain 31507 chr2 243199373 + 234957275 234957642 L1PA7 6471 - 859 1226 81630 367 chain 71645 chr2 243199373 + 234957647 234958490 L1PA7 6471 + 5618 6457 47629 6 4 0 833 chain 12398 chr2 243199373 + 234964554 234964692 L1PA4 6152 - 9 147 150644 138 chain 172530 chr2 243199373 + 234988254 234990193 L1PA5 6144 - 9 1968 21757 153 6 27 739 1 0 1040 chain 53180 chr2 243199373 + 235015286 235016022 L1PA8 5853 + 5121 5853 56904 25 1 0 207 13 9 111 0 1 90 1 0 43 3 1 19 0 6 45 2 1 10 1 0 51 2 1 19 2 1 40 0 1 23 1 3 6 2 0 19 chain 28152 chr2 243199373 + 235022877 235023182 AluYa5 310 - 7 310 92453 210 2 0 93 chain 32171 chr2 243199373 + 235045134 235045698 MER4B 649 + 14 629 80580 42 3 4 50 3 0 5 6 2 40 0 42 12 0 25 98 19 27 42 40 22 51 1 0 10 0 1 27 19 20 30 1 0 65 chain 118523 chr2 243199373 + 235060747 235062298 THE1B-int 1605 - 13 1605 31610 26 0 9 108 2 1 413 8 0 10 0 13 301 5 6 58 1 2 137 7 8 36 7 32 398 4 1 8 0 3 22 chain 7854 chr2 243199373 + 235068351 235068467 MSTB 430 - 11 124 171964 84 7 4 25 chain 82247 chr2 243199373 + 235076708 235077677 LTR5_Hs 974 - 0 974 42659 103 2 0 40 0 7 538 0 1 134 1 0 151 chain 29122 chr2 243199373 + 235095573 235095944 THE1B 368 + 0 368 88446 166 9 8 18 2 0 176 chain 70069 chr2 243199373 + 235100969 235101728 L1PA3long 6157 - 8 767 48363 759 chain 69824 chr2 243199373 + 235101732 235102488 L1PA3long 6157 + 4617 5373 48466 756 chain 15445 chr2 243199373 + 235118631 235118887 L1PA13 3608 - 120 366 140066 22 1 0 18 2 0 7 2 0 18 0 1 15 19 16 56 1 0 62 2 0 31 chain 23220 chr2 243199373 + 235122332 235122626 AluYg6 310 + 10 310 114602 113 1 0 3 3 0 101 0 11 29 9 8 35 chain 25638 chr2 243199373 + 235131453 235131820 THE1D 372 - 0 372 101548 25 6 0 146 2 0 8 5 8 110 11 21 54 chain 15954 chr2 243199373 + 235152575 235152943 MER51B 395 - 70 395 138507 82 15 14 32 1 0 12 62 5 36 0 56 19 53 12 46 0 1 10 chain 29498 chr2 243199373 + 235185823 235186156 L1PA4 6152 + 5818 6152 86642 182 3 4 148 chain 7955 chr2 243199373 + 235193544 235193637 MSTD 398 + 7 100 171306 93 chain 22235 chr2 243199373 + 235218006 235218363 THE1B 368 - 0 366 119190 75 1 0 101 3 1 18 2 1 62 0 1 6 50 62 39 chain 10364 chr2 243199373 + 235220511 235220636 THE1B 368 + 244 368 158854 49 1 0 75 chain 83915 chr2 243199373 + 235260397 235261369 LTR13A 966 + 0 966 41947 72 5 0 755 1 0 139 chain 11380 chr2 243199373 + 235263218 235263356 AluSq2 311 + 151 289 154784 138 chain 105365 chr2 243199373 + 235267990 235269550 L1PREC2 3366 - 318 1836 35407 36 9 7 34 50 29 6 0 1 13 3 1 15 6 1 17 29 21 14 7 3 44 8 7 19 0 1 4 10 0 23 3 1 96 0 1 79 9 8 29 0 1 46 3 0 150 0 1 27 1 3 28 2 10 191 0 2 549 chain 42674 chr2 243199373 + 235287447 235287977 L1PA8 5853 - 0 531 65807 93 4 11 5 1 0 51 1 0 14 1 0 69 2 0 46 1 0 242 chain 45828 chr2 243199373 + 235292767 235293280 MER9a2 513 + 0 513 62202 513 chain 105010 chr2 243199373 + 235297519 235299146 L1PA8 5853 + 4470 5853 35498 110 0 1 176 272 0 103 0 11 61 0 1 76 8 10 223 0 7 60 0 1 30 0 11 207 7 6 44 2 0 9 1 0 4 0 1 60 1 0 14 1 0 44 2 1 19 2 1 76 0 1 15 chain 29267 chr2 243199373 + 235316031 235316450 Tigger3b 1229 + 335 766 87711 123 3 2 122 0 2 37 2 3 9 1 2 47 0 2 7 6 8 43 0 5 19 chain 51196 chr2 243199373 + 235340438 235341109 L1PA8 5853 + 5183 5853 58189 226 1 8 147 1 0 44 2 0 71 1 0 8 2 1 10 1 0 42 2 1 19 2 1 92 chain 6792 chr2 243199373 + 235354842 235355048 MER31B 477 - 214 477 179014 15 14 6 39 86 151 52 chain 17892 chr2 243199373 + 235364606 235364845 L1PA8 5853 - 0 235 133124 92 2 1 19 2 1 52 1 0 9 1 0 61 chain 9291 chr2 243199373 + 235390188 235390599 L1MB7 1623 - 195 575 164105 5 1 0 27 0 1 10 269 238 99 chain 31251 chr2 243199373 + 235414239 235414677 MLT2A1 477 - 74 477 82080 8 4 0 10 21 1 160 8 0 54 4 1 169 chain 46413 chr2 243199373 + 235439153 235439796 MER4B 649 + 1 641 61671 55 7 8 130 4 0 84 3 0 89 0 4 183 9 8 39 0 1 31 1 0 8 chain 5045 chr2 243199373 + 235440643 235440706 L1PB2 3958 + 3618 3681 194675 63 chain 43849 chr2 243199373 + 235441185 235441742 LTR10C 591 + 0 571 64388 138 0 1 304 1 2 55 0 2 24 5 15 30 chain 124356 chr2 243199373 + 235470824 235472251 SVA_E 1901 + 0 1879 29584 12 13 0 134 1 0 178 3 0 310 0 40 143 1 0 10 5 434 259 1 3 82 1 0 274 chain 21370 chr2 243199373 + 235482366 235482683 THE1B 368 - 0 361 122618 49 17 21 62 10 50 17 1 0 149 0 1 12 chain 21487 chr2 243199373 + 235497568 235497973 MSTA 426 - 21 426 122190 148 2 1 10 37 42 33 61 0 12 2 59 100 chain 15342 chr2 243199373 + 235565895 235566129 MER30 238 + 0 238 140362 102 26 33 64 3 0 39 chain 19295 chr2 243199373 + 235569212 235569431 AluY 311 + 85 303 129256 33 1 0 185 chain 84978 chr2 243199373 + 235571996 235573059 MER11B 1079 + 0 1064 41519 101 0 7 151 3 0 83 2 1 15 0 5 224 9 8 177 8 2 290 chain 17624 chr2 243199373 + 235589543 235589779 MER47A 366 - 22 271 133925 110 5 18 121 chain 62606 chr2 243199373 + 235602188 235602951 MER4E1 777 + 0 770 51628 17 1 0 369 1 0 76 1 2 77 1 9 220 chain 18119 chr2 243199373 + 235610773 235611134 THE1B 368 + 0 368 132544 111 0 3 6 17 15 42 76 82 29 0 1 12 12 11 56 chain 3526 chr2 243199373 + 235614538 235614577 MSTA 426 + 387 426 214937 39 chain 51271 chr2 243199373 + 235633303 235634073 MER4E 760 - 0 760 58140 22 0 2 103 1 0 103 8 0 83 2 1 79 1 3 138 4 1 22 10 10 27 12 15 31 26 26 61 13 9 24 chain 47687 chr2 243199373 + 235648576 235649176 L1PA7 6471 + 5872 6470 60706 395 7 8 33 14 15 126 1 2 13 5 0 6 chain 10359 chr2 243199373 + 235649210 235649340 MER4D1 891 + 735 866 158870 89 0 1 41 chain 74652 chr2 243199373 + 235654694 235655739 HSMAR1 1287 + 0 1051 46184 31 1 0 37 7 8 86 4 3 390 17 15 186 0 4 88 0 1 53 0 1 8 34 37 103 chain 5425 chr2 243199373 + 235661761 235661847 MER51A 677 - 417 498 190758 41 0 5 15 10 0 20 chain 232803 chr2 243199373 + 235663603 235666162 L1PA3long 6157 - 255 2815 17150 1960 2 1 509 0 2 88 chain 20671 chr2 243199373 + 235666168 235666387 L1PA3long 6157 + 5934 6153 125071 219 chain 527835 chr2 243199373 + 235684130 235690287 L1PA5 6144 + 18 6143 4418 734 12 13 249 16 7 148 24 15 1129 2 1 267 0 1 588 1 0 339 1 0 726 0 2 37 14 0 3 4 0 199 0 2 45 0 1 1619 chain 7707 chr2 243199373 + 235695921 235696075 MLT1A0 366 - 209 357 172894 5 0 1 85 47 40 17 chain 22429 chr2 243199373 + 235736881 235737546 LTR8 732 - 47 731 118340 37 165 166 46 155 159 62 22 19 144 0 17 34 chain 15756 chr2 243199373 + 235748817 235749036 MLT2A2 560 + 6 560 139092 39 0 226 24 9 118 147 chain 26665 chr2 243199373 + 235781800 235782154 THE1B 368 - 0 368 97438 200 1 0 103 6 21 44 chain 19838 chr2 243199373 + 235791437 235791703 MER4A1 472 - 152 470 127687 44 11 61 121 0 1 29 0 1 61 chain 556660 chr2 243199373 + 235797033 235803063 L1PA2 6032 + 0 6032 652 74 0 1 2189 0 4 2245 1 0 1514 2 0 5 chain 5481 chr2 243199373 + 235805085 235805158 MLT1A0 366 + 244 316 190215 20 1 0 52 chain 11738 chr2 243199373 + 235824333 235824589 L1PA11 4918 + 4350 4578 153311 40 6 4 13 2 0 40 0 1 24 2 0 16 1 0 20 50 31 14 2 1 13 2 0 11 chain 59109 chr2 243199373 + 235833357 235834234 L1PA14 3548 - 150 1012 53325 6 1 0 14 4 2 35 4 0 9 1 0 111 1 0 62 5 6 16 1 0 5 3 1 13 12 8 105 2 0 7 10 8 37 2 0 8 2 0 6 3 1 43 0 6 102 0 4 93 2 1 98 0 1 54 chain 21832 chr2 243199373 + 235925841 235926111 AluSg7 307 + 30 302 120890 77 1 2 22 0 1 170 chain 63348 chr2 243199373 + 235966147 235966844 L1PA4 6152 - 12 710 51297 101 0 1 596 chain 25425 chr2 243199373 + 235975912 235976213 AluSp 311 - 12 311 102570 167 2 0 132 chain 123633 chr2 243199373 + 235979510 235981583 L1PB1 5432 + 3698 5420 29832 30 1 4 226 1 0 244 0 1 396 0 6 22 5 7 159 1 9 263 1 0 38 20 2 11 0 3 19 1 0 9 1 0 10 15 10 47 2 0 6 2 1 14 5 4 36 6 5 16 3 0 6 16 6 13 353 27 22 1 0 22 2 1 11 1 0 16 chain 4112 chr2 243199373 + 235989744 235989791 THE1C 375 - 328 375 205752 47 chain 39811 chr2 243199373 + 236027318 236027761 L1PA5 6144 - 3 446 69613 443 chain 29295 chr2 243199373 + 236054407 236054780 THE1C 375 - 0 375 87594 265 1 2 78 0 1 29 chain 23428 chr2 243199373 + 236063147 236063507 THE1B 368 + 0 366 113486 61 8 9 99 1 0 21 34 40 10 1 0 24 0 1 101 chain 11558 chr2 243199373 + 236094458 236094612 L1P3 4156 + 3988 4139 154072 119 2 0 5 5 4 23 chain 30034 chr2 243199373 + 236094683 236095001 AluYb8 318 + 0 318 84699 318 chain 58635 chr2 243199373 + 236101132 236101796 L1PA5 6144 - 15 680 53617 134 0 1 530 chain 7433 chr2 243199373 + 236105967 236106053 LTR24B 570 + 0 86 174556 86 chain 21631 chr2 243199373 + 236117093 236117372 AluY 311 + 0 298 121652 52 2 21 52 3 1 154 0 2 16 chain 25223 chr2 243199373 + 236118364 236118657 AluY 311 + 12 305 103616 293 chain 7864 chr2 243199373 + 236130300 236130389 L1PA6 6164 + 6071 6160 171908 89 chain 9501 chr2 243199373 + 236156929 236157123 MER2 342 + 9 211 163069 35 58 66 101 chain 29940 chr2 243199373 + 236158987 236159302 AluYb8 318 + 0 315 85001 315 chain 24521 chr2 243199373 + 236164656 236164959 MER4A1_ 611 - 2 296 107436 256 9 0 38 chain 17446 chr2 243199373 + 236166569 236166804 MER1B 344 - 0 240 134389 59 12 17 164 chain 5185 chr2 243199373 + 236180856 236180919 L1MC3 1789 + 1123 1186 193190 63 chain 37134 chr2 243199373 + 236204563 236205118 MER4B 649 - 8 648 73332 8 1 0 21 0 7 43 1 0 84 1 0 25 19 67 67 3 0 76 14 37 114 1 14 47 1 0 22 0 1 7 chain 29898 chr2 243199373 + 236206091 236206513 MSTA 426 - 0 426 85106 218 12 14 9 0 1 146 22 23 15 chain 23159 chr2 243199373 + 236211388 236211676 AluY 311 + 1 294 114857 14 2 4 109 1 2 148 0 2 14 chain 101566 chr2 243199373 + 236215493 236216645 L1PA5 6144 + 4991 6143 36376 303 1 0 695 0 1 153 chain 43418 chr2 243199373 + 236230196 236230737 MER41A 554 + 0 554 64911 376 0 7 35 8 9 41 0 5 81 chain 3502 chr2 243199373 + 236234442 236234479 MLT1C 463 + 58 95 215330 37 chain 43620 chr2 243199373 + 236234618 236235420 L1PB1 5432 + 4718 5414 64660 134 5 7 70 5 0 168 88 15 24 1 0 8 1 0 12 7 3 9 2 0 52 2 1 16 2 1 42 1 0 14 25 14 18 25 20 24 1 0 21 1 0 13 1 0 10 chain 32921 chr2 243199373 + 236237075 236237522 MLT2A1 477 - 6 477 79336 37 17 51 164 10 3 47 5 2 167 chain 3356 chr2 243199373 + 236282290 236282325 MER5A 189 + 5 40 217944 35 chain 22322 chr2 243199373 + 236283647 236283928 AluSc 308 + 0 292 118814 23 0 8 61 0 1 173 10 12 14 chain 9639 chr2 243199373 + 236294317 236294441 MER85 139 + 5 139 162399 85 0 10 39 chain 35004 chr2 243199373 + 236323737 236324178 MLT2A1 477 - 0 477 76185 52 2 34 68 1 0 149 1 5 26 0 1 142 chain 6494 chr2 243199373 + 236334526 236334603 Tigger1 2417 + 2298 2375 181308 77 chain 29747 chr2 243199373 + 236352355 236352711 MER41A 554 + 0 356 85668 356 chain 41191 chr2 243199373 + 236352741 236353305 LTR10A 586 - 13 584 67654 46 0 1 13 12 10 44 0 5 171 1 2 53 0 1 16 8 9 200 chain 47725 chr2 243199373 + 236384425 236385197 L1PA16 3655 + 2875 3619 60670 24 1 0 23 1 0 54 1 0 15 1 0 129 11 12 69 1 0 87 39 37 91 4 3 159 3 1 14 31 12 14 chain 24908 chr2 243199373 + 236396773 236397036 AluYa5 310 - 13 276 105292 263 chain 29228 chr2 243199373 + 236397197 236397505 AluYa5 310 - 2 310 87920 308 chain 19471 chr2 243199373 + 236511664 236512015 THE1B 368 + 0 356 128750 104 12 13 60 22 16 7 1 0 14 0 4 10 7 15 63 23 22 28 chain 8450 chr2 243199373 + 236537742 236537907 L1PB1 5432 - 151 312 168565 44 6 5 40 1 6 17 2 0 11 6 2 9 1 0 11 1 0 16 chain 23785 chr2 243199373 + 236561827 236562113 AluYk4 311 + 0 286 111564 125 0 1 144 1 0 16 chain 38624 chr2 243199373 + 236564983 236565485 LTR10F 562 + 0 562 71260 106 0 84 38 0 3 30 2 0 4 26 0 151 0 1 145 chain 23648 chr2 243199373 + 236592346 236592679 L1PA6 6164 - 2 332 112319 30 1 0 112 20 21 75 6 4 30 1 0 58 chain 12317 chr2 243199373 + 236631432 236631624 MER30 238 - 0 199 150951 42 3 0 72 21 31 54 chain 46993 chr2 243199373 + 236808854 236809403 HERVL-int 5654 - 575 1131 61218 156 0 5 28 0 2 365 chain 27768 chr2 243199373 + 236855742 236856259 L1PB1 5432 - 10 492 93807 17 1 0 13 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 26 16 12 1 0 44 18 16 51 19 13 12 3 2 4 1 0 25 2 0 10 10 5 101 1 2 55 chain 256178 chr2 243199373 + 236893166 236896457 L1PA8A 6298 - 25 3266 15924 61 1 2 622 0 1 14 1 0 83 0 3 275 0 1 7 0 1 89 22 0 182 0 1 228 0 2 6 9 7 198 2 0 618 0 1 114 1 4 33 0 4 16 37 2 248 0 2 49 1 0 27 52 0 16 0 1 10 5 6 79 3 46 182 chain 5595 chr2 243199373 + 236914878 236915160 L1MC3 1789 - 551 840 189132 18 77 86 36 108 106 43 chain 20882 chr2 243199373 + 236971332 236971594 AluSg7 307 - 36 298 124348 78 1 0 62 1 2 120 chain 3932 chr2 243199373 + 237001444 237001627 L1MC4 1079 + 71 254 208378 28 115 116 35 1 0 4 chain 33905 chr2 243199373 + 237025301 237025958 L1PB1 5432 - 45 669 77765 17 1 0 24 24 19 16 9 0 11 2 0 4 1 0 14 2 1 13 15 14 17 1 0 15 3 2 50 34 26 6 1 0 22 5 0 13 1 0 50 16 16 21 0 2 41 8 10 200 chain 8323 chr2 243199373 + 237052649 237052748 MER63A 208 + 54 153 169266 99 chain 29275 chr2 243199373 + 237092507 237092883 MSTB-int 1649 + 0 369 87671 170 0 1 87 9 0 67 0 1 43 chain 21827 chr2 243199373 + 237106213 237106479 AluSp 311 + 31 296 120910 101 1 0 164 chain 20395 chr2 243199373 + 237111189 237111437 AluSc 308 + 8 296 125907 93 0 40 155 chain 18388 chr2 243199373 + 237130000 237130331 THE1B 368 + 2 368 131823 39 6 7 60 14 15 54 54 87 104 chain 19151 chr2 243199373 + 237170322 237170688 THE1B 368 - 6 368 129678 50 1 2 7 2 0 60 71 67 41 27 28 107 chain 20047 chr2 243199373 + 237179846 237180198 MER4A1 472 + 0 400 126987 14 0 4 26 1 2 38 0 24 27 1 0 61 1 0 5 66 87 112 chain 27305 chr2 243199373 + 237182803 237183217 MSTA 426 - 0 426 95260 101 9 29 39 23 21 30 3 1 24 1 0 19 4 0 125 0 1 36 chain 23916 chr2 243199373 + 237184873 237185282 MSTA 426 + 0 426 110832 26 0 1 69 50 56 52 0 9 8 7 1 50 2 1 27 9 17 109 chain 3941 chr2 243199373 + 237214129 237214197 MER5A1 166 - 16 85 208258 28 10 11 30 chain 32468 chr2 243199373 + 237255892 237256484 L1PB1 5432 + 4841 5418 80079 122 0 2 20 13 21 20 10 0 47 0 4 26 7 0 11 3 0 24 1 0 9 16 11 9 2 0 53 2 1 12 8 29 19 1 0 14 3 0 16 9 0 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 14076 chr2 243199373 + 237283081 237283315 MSTA 426 - 12 243 144299 149 15 43 8 27 0 8 4 0 23 chain 552834 chr2 243199373 + 237292309 237298328 L1PA2 6032 - 3 6028 1089 844 1 6 2844 0 1 517 1 2 1558 1 0 253 chain 99085 chr2 243199373 + 237317934 237319013 L1PA3long 6157 - 1683 2762 37001 1079 chain 154231 chr2 243199373 + 237319013 237320699 L1PA3long 6157 + 4470 6157 24071 836 0 1 850 chain 62658 chr2 243199373 + 237326217 237327018 L1PA8 5853 - 0 795 51606 93 1 0 19 3 2 51 2 1 8 2 1 70 2 0 42 6 5 184 1 4 31 0 1 269 5 2 12 chain 16185 chr2 243199373 + 237329578 237329759 L1PA4 6152 - 3112 3293 137802 181 chain 274297 chr2 243199373 + 237329759 237332839 L1PA4 6152 + 3044 6136 14963 670 0 3 218 6 7 344 0 2 59 0 4 524 0 1 425 0 1 834 chain 159316 chr2 243199373 + 237345587 237347315 L1PA3long 6157 - 1 1729 23427 1728 chain 58547 chr2 243199373 + 237347315 237347971 L1P1 4361 + 2585 3242 53402 651 0 1 5 chain 25102 chr2 243199373 + 237401633 237401986 THE1B 368 - 0 367 104280 125 17 29 10 10 13 22 1 0 168 chain 29008 chr2 243199373 + 237434796 237435109 AluYa5 310 - 0 310 88947 184 3 0 126 chain 2931 chr2 243199373 + 237438131 237438166 MIRc 230 - 148 185 226492 18 0 2 17 chain 16702 chr2 243199373 + 237450306 237450651 THE1B 368 + 0 353 136400 47 61 71 51 1 0 27 15 22 14 1 0 7 5 4 68 7 1 41 chain 9678 chr2 243199373 + 237547938 237548062 MER85 139 + 5 139 162200 85 0 10 39 chain 9081 chr2 243199373 + 237567506 237567686 L1PA7 6471 - 4 156 165157 8 2 0 72 58 32 40 chain 2904 chr2 243199373 + 237586375 237586421 MIR 256 + 111 151 226979 32 6 0 8 chain 28911 chr2 243199373 + 237592497 237592897 MER51B 395 - 9 395 89413 129 13 12 206 18 5 34 chain 3055 chr2 243199373 + 237623364 237623481 MER33 330 - 0 125 223903 21 65 73 31 chain 42398 chr2 243199373 + 237688091 237688662 MLT2A2 560 - 0 560 66153 113 30 0 34 3 14 106 0 7 147 6 7 132 chain 40975 chr2 243199373 + 237719623 237720238 MER51A 677 + 0 663 67943 135 3 44 20 10 0 30 0 9 151 32 40 104 5 6 76 7 6 42 chain 6612 chr2 243199373 + 237721178 237721358 MER82 654 + 22 204 180363 49 84 86 47 chain 5482 chr2 243199373 + 237756218 237756444 MER74B 573 - 340 556 190208 50 145 135 31 chain 126365 chr2 243199373 + 237773421 237774996 THE1A-int 1579 - 0 1579 28989 922 0 2 4 0 1 153 1 0 9 0 1 447 0 1 39 chain 4690 chr2 243199373 + 237795497 237795575 MADE1 96 + 0 96 198635 37 0 2 7 10 26 24 chain 64506 chr2 243199373 + 237838864 237839618 L1PA7 6471 + 5710 6466 50798 421 0 1 325 0 1 8 chain 21432 chr2 243199373 + 237860087 237860439 THE1B 368 + 0 368 122397 44 10 39 7 14 0 39 6 7 32 1 0 4 9 8 93 6 9 12 1 0 74 chain 3812 chr2 243199373 + 237869540 237869584 MER53 195 - 0 44 210198 44 chain 42276 chr2 243199373 + 237875589 237876128 MER41A 554 - 0 541 66300 14 1 0 279 9 10 15 6 7 180 0 1 35 chain 46881 chr2 243199373 + 237883272 237883891 LTR9B 643 + 0 630 61324 98 1 0 103 6 5 305 1 15 77 2 1 26 chain 20964 chr2 243199373 + 237887028 237887304 AluSp 311 - 34 311 124054 63 6 5 32 0 3 54 1 0 120 chain 4054 chr2 243199373 + 237887404 237887452 MADE1 96 - 2 50 206573 48 chain 21009 chr2 243199373 + 237892156 237892473 THE1B 368 + 27 368 123880 17 5 20 104 1 0 30 37 47 123 chain 12561 chr2 243199373 + 237923279 237923436 L1PB4 2604 - 52 209 150003 157 chain 13623 chr2 243199373 + 237987121 237987290 THE1C 375 + 0 168 145888 19 1 0 149 chain 20706 chr2 243199373 + 237989648 237990302 THE1D 372 + 1 360 124945 71 0 10 22 0 1 4 1 0 26 326 10 40 5 8 13 25 33 121 chain 30046 chr2 243199373 + 237992774 237993158 MLT2A1 477 - 93 476 84657 35 0 1 54 0 1 89 0 1 27 1 0 6 5 2 167 chain 12068 chr2 243199373 + 238061464 238061607 L1PA4 6152 + 5990 6143 151905 12 0 10 131 chain 165692 chr2 243199373 + 238096297 238098082 L1PA2 6032 + 4243 6028 22554 1785 chain 12414 chr2 243199373 + 238119798 238119942 MER4A1 472 - 0 144 150582 144 chain 4434 chr2 243199373 + 238127350 238127483 L1MDa 1598 + 444 555 201535 36 1 0 7 67 46 22 chain 6695 chr2 243199373 + 238134416 238134511 L1PB1 5432 - 10 100 179723 18 1 0 11 1 0 23 1 0 24 2 0 14 chain 73567 chr2 243199373 + 238149148 238150111 MER11A 1151 + 0 1151 46751 55 0 99 22 8 0 51 0 4 63 4 0 149 0 1 94 0 1 145 5 6 51 0 3 63 0 81 19 7 16 49 1 0 11 0 1 127 1 2 38 chain 147976 chr2 243199373 + 238155786 238157409 L1PA3long 6157 - 0 1625 24883 142 0 1 497 0 1 984 chain 197347 chr2 243199373 + 238181873 238184785 L1PREC2 3366 + 139 3044 19400 31 1 0 10 2 0 20 7 2 7 1 0 24 2 1 12 1 0 11 4 1 33 9 8 101 2 0 68 1 0 119 44 0 200 2 0 55 1 0 5 0 1 67 3 0 267 0 1 83 9 10 34 0 3 276 5 6 97 0 7 160 0 1 160 0 1 65 1 0 112 7 89 37 17 17 42 1 0 77 0 1 130 0 1 125 1 0 11 0 1 22 4 2 46 9 8 43 8 4 13 29 21 16 7 2 15 3 0 4 0 1 25 37 20 35 5 7 31 chain 38795 chr2 243199373 + 238186769 238187234 LTR2 463 + 0 463 71021 127 0 3 96 5 0 237 chain 26369 chr2 243199373 + 238211066 238211426 THE1A 353 + 2 353 98536 103 6 5 189 13 5 49 chain 121017 chr2 243199373 + 238211426 238212967 THE1A-int 1579 + 0 1574 30690 415 1 2 35 0 1 23 0 2 185 11 8 314 1 2 210 0 28 22 0 3 218 0 1 91 1 0 14 chain 37773 chr2 243199373 + 238228012 238228528 MLT2A2 560 + 15 543 72456 117 42 43 231 0 11 126 chain 2864 chr2 243199373 + 238238381 238238514 MER104 178 - 38 171 227639 25 82 82 26 chain 3240 chr2 243199373 + 238247429 238247501 MLT1H 522 + 451 520 220223 6 4 0 31 14 15 17 chain 43717 chr2 243199373 + 238262534 238263458 MER4A1_ 611 + 2 611 64549 119 329 13 111 10 11 131 1 0 205 6 7 12 chain 5110 chr2 243199373 + 238309652 238309754 L1MB2 1706 + 319 422 193973 20 31 32 51 chain 26249 chr2 243199373 + 238363195 238363566 THE1B 368 - 0 368 99023 100 0 1 37 7 6 10 16 14 31 1 0 169 chain 14877 chr2 243199373 + 238363566 238363755 LTR39 781 + 542 730 141691 173 1 0 15 chain 221134 chr2 243199373 + 238370296 238372811 L1PA5 6144 + 3618 6130 17805 662 0 2 59 0 4 102 0 1 180 1 0 691 7 1 425 0 3 78 0 1 279 7 0 24 chain 20461 chr2 243199373 + 238378071 238378457 THE1C 375 - 2 375 125728 24 3 5 113 63 45 7 0 2 86 13 0 8 9 23 60 chain 38755 chr2 243199373 + 238415004 238415474 LTR2 463 - 0 463 71069 24 1 0 28 1 0 30 0 1 141 7 1 238 chain 17636 chr2 243199373 + 238423042 238423303 MER39B 650 - 383 650 133894 48 14 18 20 1 0 4 6 7 108 0 1 34 0 1 26 chain 5944 chr2 243199373 + 238471807 238471875 U6 107 + 0 68 185738 68 chain 30171 chr2 243199373 + 238515426 238515838 LTR7 482 + 0 482 84268 69 8 46 79 0 1 6 1 0 23 8 40 218 chain 286250 chr2 243199373 + 238515840 238519631 HERVH-int 3825 + 0 3825 14269 212 4 15 106 1 0 197 1 0 40 1 0 10 1 0 12 66 12 14 1 0 5 33 8 26 24 0 26 2 0 14 1 0 17 109 0 42 0 1 6 0 2 14 0 3 367 1 0 74 14 0 218 0 1 243 4 31 290 0 4 260 0 1 61 0 1 13 0 4 624 144 356 268 0 2 225 chain 30564 chr2 243199373 + 238520885 238521297 LTR7 482 + 0 482 83271 69 8 46 109 8 40 16 1 0 9 0 1 192 chain 37421 chr2 243199373 + 238546634 238547128 MER1A 529 - 7 499 72938 57 7 9 375 5 1 50 chain 18105 chr2 243199373 + 238567189 238567537 THE1C 375 - 40 375 132585 92 19 15 37 14 15 58 1 0 4 58 51 49 2 0 14 chain 46863 chr2 243199373 + 238575667 238576330 L1PA8 5853 - 0 628 61339 93 1 0 16 1 0 48 28 26 62 2 0 5 28 0 34 6 5 339 chain 25551 chr2 243199373 + 238590318 238590589 AluYa5 310 - 7 278 101981 271 chain 22786 chr2 243199373 + 238657446 238657816 THE1D 372 - 0 372 116655 35 2 1 90 6 12 41 3 5 23 0 4 73 41 32 56 chain 105558 chr2 243199373 + 238692159 238693327 L1PA4 6152 - 12 1180 35360 318 0 1 527 1 0 322 chain 43617 chr2 243199373 + 238695237 238695886 LTR14B 630 + 18 630 64663 79 87 0 10 0 2 5 14 57 93 0 7 7 7 0 274 0 5 73 chain 3928 chr2 243199373 + 238706741 238706951 MER96B 391 + 156 389 208451 21 98 120 27 40 41 24 chain 8558 chr2 243199373 + 238713318 238713513 L1P4 1494 - 84 272 167972 12 20 8 40 1 0 59 32 34 13 3 7 15 chain 2853 chr2 243199373 + 238718403 238718435 MER33 330 - 42 74 227807 32 chain 13084 chr2 243199373 + 238735372 238735558 MER2 342 + 88 284 147904 26 7 6 33 0 11 120 chain 66877 chr2 243199373 + 238748861 238749921 L1PA15 4387 + 3319 4356 49695 28 30 32 178 1 0 44 1 0 6 9 0 45 0 4 154 0 2 57 6 4 17 2 0 43 2 1 24 0 3 37 2 0 106 1 0 26 1 0 55 1 0 23 14 9 49 7 4 13 9 11 20 3 1 12 10 5 24 chain 523311 chr2 243199373 + 238752114 238758208 L1PA5 6144 - 5 6144 4837 838 1 0 838 0 1 12 0 3 102 0 4 701 9 10 99 1 0 98 0 3 272 1 0 110 0 1 236 0 1 1481 5 6 15 6 16 121 9 0 319 3 0 6 0 3 9 20 25 378 1 2 251 7 19 24 1 15 120 chain 27236 chr2 243199373 + 238759164 238759585 LTR7B 505 - 10 505 95475 41 14 13 52 0 1 78 0 88 27 35 11 66 0 10 108 chain 4920 chr2 243199373 + 238775671 238775728 Tigger2 2703 - 167 224 196058 57 chain 9718 chr2 243199373 + 238788133 238788246 L1PA4 6152 - 0 113 161992 113 chain 7768 chr2 243199373 + 238808454 238808544 FLAM_C 140 + 17 107 172492 90 chain 12077 chr2 243199373 + 238840998 238841446 MER30 238 + 47 238 151878 53 283 29 65 3 0 44 chain 10864 chr2 243199373 + 238848981 238849130 MER61E 571 - 404 571 156730 43 0 1 25 0 13 59 7 11 15 chain 5802 chr2 243199373 + 238851840 238851923 LTR23 429 - 32 113 187126 4 1 0 50 1 0 27 chain 21687 chr2 243199373 + 238872320 238872723 MER4D1 891 + 320 731 121441 67 1 8 90 0 1 38 14 17 45 12 17 14 1 0 36 64 57 21 chain 12094 chr2 243199373 + 238910912 238911046 L1PA2 6032 - 2 136 151818 134 chain 27547 chr2 243199373 + 238959994 238960346 THE1B 368 + 0 368 94512 39 1 16 121 1 0 161 0 2 29 chain 94284 chr2 243199373 + 238965827 238967063 LTR12C 1709 - 0 1709 38269 84 1 0 67 1 0 245 0 1 84 11 4 21 0 485 141 2 0 30 45 82 12 35 0 170 9 5 278 chain 24863 chr2 243199373 + 238975385 238975748 THE1B 368 - 0 368 105556 126 1 0 10 1 0 18 18 25 20 1 0 96 5 7 62 1 0 4 chain 9789 chr2 243199373 + 238984520 238984649 MER85 139 - 0 139 161654 23 2 0 7 1 13 96 chain 15076 chr2 243199373 + 238985212 238985373 SVA_F 1814 + 1653 1814 141098 161 chain 104766 chr2 243199373 + 239122339 239124581 L1M1 2793 - 98 2296 35555 10 1 0 12 1 0 45 6 9 32 9 14 36 0 7 90 1 0 104 16 21 29 304 0 14 0 395 61 9 1 144 4 0 7 18 1 105 1 0 285 11 4 21 2 0 68 1 0 59 0 4 95 3 2 17 1 0 50 0 1 50 1 0 6 5 3 51 4 3 8 2 0 29 6 5 21 39 18 14 2 0 4 2 0 11 30 35 33 81 26 17 65 52 8 11 0 4 2 0 14 1 0 4 3 2 12 7 4 9 1 0 8 1 0 4 chain 36980 chr2 243199373 + 239180318 239180779 LTR19A 502 + 0 502 73534 178 0 37 17 6 5 74 1 2 175 0 4 10 chain 308299 chr2 243199373 + 239280779 239284309 L1PA6 6164 - 5 3541 13073 333 1 0 1460 0 4 75 1 0 381 0 2 12 0 3 97 3 0 601 0 1 500 0 1 66 chain 4044 chr2 243199373 + 239295275 239295341 MER65C 458 - 369 437 206747 21 10 12 35 chain 116647 chr2 243199373 + 239303882 239305181 L1PA4 6152 + 4848 6152 32246 159 0 1 290 0 4 850 chain 4643 chr2 243199373 + 239321300 239321354 U6 107 + 20 74 199140 54 chain 3813 chr2 243199373 + 239392949 239393001 Charlie12 129 + 79 129 210192 19 1 0 3 1 0 28 chain 62384 chr2 243199373 + 239422463 239423216 LTR17 781 + 0 774 51728 327 1 0 368 2 24 55 chain 5724 chr2 243199373 + 239429216 239429358 HAL1-2a_MD 234 - 18 209 187894 14 0 79 13 3 0 15 6 0 10 35 5 23 0 9 23 chain 14798 chr2 243199373 + 239493597 239493760 L1PA7 6471 - 3 166 141941 163 chain 18345 chr2 243199373 + 239503236 239503490 MER66D 528 + 273 528 131945 85 2 1 56 7 9 104 chain 332141 chr2 243199373 + 239515616 239520509 L1PB1 5432 + 20 5427 12123 99 17 23 41 1 0 181 1 0 37 1 0 143 2 1 57 3 2 78 11 15 137 2 0 44 0 1 174 1 0 16 24 27 293 16 20 504 0 2 239 1 2 112 0 3 63 7 3 158 9 0 51 1 0 80 0 40 38 3 4 76 56 673 263 2 10 173 6 7 48 2 0 155 1 0 72 9 15 119 0 1 55 5 6 59 8 12 35 28 27 107 3 0 183 1 9 182 21 21 45 198 56 17 1 0 12 1 0 12 5 1 10 11 9 42 2 1 15 1 0 45 1 0 10 26 17 19 2 0 4 1 0 15 2 0 24 1 0 22 0 3 9 1 0 15 1 0 4 1 0 4 chain 25089 chr2 243199373 + 239526933 239527282 THE1B 368 - 6 368 104354 40 23 22 131 1 0 114 0 15 40 chain 17470 chr2 243199373 + 239532475 239532848 MSTA 426 - 0 400 134330 109 3 6 6 0 5 29 123 142 103 chain 3527 chr2 243199373 + 239536671 239536715 MER58A 224 + 168 213 214932 6 0 1 38 chain 17116 chr2 243199373 + 239591116 239591403 MER1B 344 - 0 313 135264 59 10 18 20 21 26 113 15 28 49 chain 47661 chr2 243199373 + 239626202 239626710 L1HS 6032 - 0 508 60727 508 chain 20446 chr2 243199373 + 239632366 239632729 THE1B 368 - 0 368 125768 60 1 0 66 61 65 40 29 30 54 0 1 52 chain 28894 chr2 243199373 + 239652744 239653309 L1PB1 5432 - 19 557 89479 9 1 0 13 1 0 21 1 0 24 2 0 5 22 19 14 10 1 10 4 1 16 1 0 18 3 4 21 7 6 10 2 1 48 32 25 9 1 0 23 5 0 8 1 4 32 0 1 60 0 4 131 chain 58443 chr2 243199373 + 239666521 239667161 L1PA4 6152 - 7 652 53719 142 0 4 181 0 1 317 chain 10138 chr2 243199373 + 239678844 239678973 MER85 139 - 0 139 159910 40 0 10 89 chain 25252 chr2 243199373 + 239683092 239683444 THE1A 353 - 0 353 103469 182 1 2 59 2 1 69 15 16 24 chain 6590 chr2 243199373 + 239702307 239702390 L1MB3 1562 - 666 749 180539 83 chain 29148 chr2 243199373 + 239720800 239721110 AluYa5 310 - 0 310 88322 310 chain 8435 chr2 243199373 + 239746872 239746978 THE1B 368 + 1 109 168651 94 0 2 12 chain 5678 chr2 243199373 + 239778172 239778243 L1MB3 1562 + 766 837 188318 71 chain 31630 chr2 243199373 + 239840363 239840968 L1PB1 5432 + 4855 5410 81432 104 4 6 129 0 1 8 33 11 11 10 9 13 16 11 11 2 0 43 1 0 7 3 2 16 1 0 43 1 0 14 24 14 9 1 0 10 8 5 14 2 0 24 1 0 21 1 0 11 1 0 8 chain 6189 chr2 243199373 + 239842896 239842967 MER41A 554 + 395 466 183665 71 chain 183471 chr2 243199373 + 239881669 239884345 L1PB1 5432 + 2844 5423 20631 5 0 1 245 1 0 472 0 2 379 0 1 13 25 24 136 0 2 38 0 13 16 14 0 238 1 0 5 0 1 110 2 1 80 3 0 226 8 9 134 1 2 101 89 16 24 1 0 5 2 1 14 5 1 9 2 0 18 1 5 29 2 1 16 1 0 7 5 6 31 1 0 15 54 40 10 2 0 24 1 0 19 8 7 8 1 0 19 chain 28113 chr2 243199373 + 239902210 239902708 LTR17 781 - 455 781 92594 179 172 0 147 chain 13845 chr2 243199373 + 239902411 239902561 L1HS 6032 - 0 150 145080 150 chain 93676 chr2 243199373 + 239903020 239904102 HERV17-int 4347 - 0 1102 38448 137 0 1 105 0 5 139 0 5 12 5 0 90 0 14 594 chain 12989 chr2 243199373 + 239911832 239912025 L1PA5 6144 - 12 172 148287 114 36 3 43 chain 50730 chr2 243199373 + 239959611 239960186 SVA_B 1603 - 6 656 58482 526 5 81 14 1 0 29 chain 26488 chr2 243199373 + 240129736 240130051 AluY 311 + 0 311 98084 133 5 1 177 chain 126347 chr2 243199373 + 240139946 240141324 L1PA3long 6157 + 4778 6157 28995 1266 0 1 112 chain 22690 chr2 243199373 + 240241814 240242098 AluSq2 311 + 19 305 117126 113 7 9 164 chain 29663 chr2 243199373 + 240296087 240296397 AluYa5 310 - 0 310 86002 310 chain 10330 chr2 243199373 + 240311038 240311217 LTR12B 2670 + 1497 1670 158988 21 7 4 46 4 0 6 7 11 59 3 0 26 chain 16198 chr2 243199373 + 240327291 240327483 L1PA5 6144 + 5698 5891 137760 126 0 1 66 chain 7115 chr2 243199373 + 240338571 240338714 THE1B 368 + 154 306 176648 15 1 0 24 40 50 63 chain 133041 chr2 243199373 + 240370634 240372123 SVA_D 2077 - 1 2071 27414 435 0 10 181 0 1 4 0 227 52 0 349 793 6 0 18 chain 18343 chr2 243199373 + 240407053 240407414 THE1B 368 - 0 368 131948 56 11 10 59 67 74 34 27 28 107 chain 5996 chr2 243199373 + 240475057 240475128 MSTA 426 + 355 426 185280 71 chain 9373 chr2 243199373 + 240560336 240560514 MER49 923 + 4 201 163696 22 19 20 26 0 1 4 1 0 8 1 2 19 7 24 71 chain 27773 chr2 243199373 + 240655851 240656216 THE1C 375 - 0 372 93789 321 7 16 23 2 0 12 chain 64682 chr2 243199373 + 240717566 240718326 SVA_D 2077 + 1314 2077 50703 32 0 1 22 0 1 4 3 1 18 12 14 42 0 1 627 chain 3160 chr2 243199373 + 240753844 240753886 THE1B 368 + 136 177 221747 32 1 0 9 chain 22750 chr2 243199373 + 240756279 240756549 AluY 311 + 10 299 116825 13 0 8 95 0 1 39 0 10 123 chain 41432 chr2 243199373 + 240758912 240759368 L1PA5 6144 - 1441 1899 67376 422 0 2 34 chain 129426 chr2 243199373 + 240759368 240760810 L1PA5 6144 + 4679 6130 28217 1024 0 16 271 7 0 140 chain 147429 chr2 243199373 + 240769040 240771986 L1PB1 5432 + 19 5427 24973 11 0 6 211 1 0 61 333 13 71 0 1 13 1 0 96 11 12 26 2 5 92 0 4 125 2 3 138 3 4 473 35 33 34 0 5 41 0 3089 28 14 21 4 0 1 154 0 8 159 0 4 86 1 0 52 16 11 21 1 0 12 1 0 9 327 15 34 17 16 16 1 0 44 82 65 24 1 0 21 1 0 8 6 5 18 3 0 5 chain 6587 chr2 243199373 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18 0 2 27 chain 11401 chr2 243199373 + 240998523 240998665 MER41D 557 - 9 155 154692 92 0 4 50 chain 43079 chr2 243199373 + 241018913 241019441 L1PA7 6471 - 6 529 65320 166 13 6 104 0 2 245 chain 43899 chr2 243199373 + 241026728 241027275 LTR19B 566 - 0 565 64337 52 0 1 35 1 0 8 0 1 156 1 17 234 0 1 60 chain 99672 chr2 243199373 + 241040056 241041594 L1PB3 3668 + 2118 3620 36863 13 0 1 210 0 1 153 8 0 79 3 4 88 5 0 215 17 7 53 17 20 25 2 0 14 2 0 289 1 0 92 11 10 58 8 13 14 21 5 12 1 0 5 6 5 23 4 2 15 0 11 8 28 23 9 4 1 17 1 0 7 chain 68916 chr2 243199373 + 241061861 241062671 L1PA5 6144 - 9 824 48853 733 0 1 24 11 10 19 0 5 23 chain 51949 chr2 243199373 + 241062671 241063257 L1PA5 6144 + 4742 5329 57649 162 0 1 424 chain 22453 chr2 243199373 + 241105300 241105684 THE1D 372 + 0 371 118232 74 20 1 32 1 2 51 39 40 53 6 8 67 0 2 41 chain 20530 chr2 243199373 + 241107874 241108209 MER1B 344 - 5 344 125546 57 31 38 24 4 0 18 21 22 180 chain 31130 chr2 243199373 + 241129522 241130046 MER4A1 472 + 0 449 82284 26 1 0 73 96 0 97 1 0 29 0 21 13 1 0 88 5 6 45 0 2 49 chain 29321 chr2 243199373 + 241181801 241182194 MLT2A1 477 - 70 477 87434 14 6 0 21 8 15 184 1 5 27 0 1 94 0 8 38 chain 17167 chr2 243199373 + 241186299 241186661 MSTA 426 + 0 389 135115 40 1 2 5 1 0 45 15 23 14 1 0 15 21 25 35 6 2 8 0 2 10 44 42 28 1 21 72 chain 26527 chr2 243199373 + 241215308 241215688 THE1D 372 + 8 372 97945 53 29 0 11 1 11 107 0 3 179 chain 49660 chr2 243199373 + 241251891 241253067 L1PB1 5432 - 9 823 59263 5 0 1 5 1 0 8 1 0 13 1 0 21 1 0 20 9 7 12 1 0 4 2 0 19 16 6 6 2 0 15 325 0 41 6 5 64 23 17 7 1 0 13 1 0 20 15 11 289 1 9 11 14 6 80 1 0 82 3 0 17 chain 25935 chr2 243199373 + 241291934 241292283 THE1A 353 - 2 353 100277 217 24 25 61 0 1 47 chain 15012 chr2 243199373 + 241307551 241307778 MER30 238 - 6 238 141283 26 6 0 71 6 0 8 11 28 99 chain 5472 chr2 243199373 + 241344852 241344940 L1MB8 1703 - 334 438 190283 49 10 26 29 chain 13331 chr2 243199373 + 241356985 241357144 L1PA4 6152 - 0 165 146970 6 0 5 149 0 1 4 chain 45201 chr2 243199373 + 241423113 241423644 L1PA7 6471 - 10 542 62823 324 0 1 207 chain 68458 chr2 243199373 + 241423650 241424464 L1PA7 6471 + 4991 5809 49066 217 1 0 265 5 7 112 5 6 23 1 0 77 0 2 97 0 1 11 chain 69031 chr2 243199373 + 241434238 241435182 LTR13 1007 + 0 954 48793 68 2 0 8 3 0 7 0 3 183 0 2 109 9 10 37 6 0 203 1 0 56 16 26 100 5 6 90 0 5 41 chain 54290 chr2 243199373 + 241474500 241475197 MER4E 760 - 36 760 56172 257 11 4 38 1 10 15 0 27 205 1 0 4 0 1 33 0 1 104 4 0 7 0 1 17 chain 547977 chr2 243199373 + 241483913 241489939 L1PA3long 6157 + 0 6156 1712 152 0 1 557 1 0 66 0 128 1888 1 0 2260 0 1 235 1 0 539 0 3 326 chain 44767 chr2 243199373 + 241495615 241496164 LTR14 556 + 3 556 63317 260 1 0 120 0 4 76 1 0 6 4 6 81 chain 22686 chr2 243199373 + 241551604 241551865 AluY 311 + 39 304 117137 84 0 4 177 chain 12520 chr2 243199373 + 241561845 241562048 MER30 238 - 0 238 150165 40 3 0 66 11 29 57 12 32 14 chain 22043 chr2 243199373 + 241572246 241572612 THE1D 372 + 0 360 120056 53 18 0 21 3 0 8 0 4 80 36 47 10 2 1 93 0 1 42 chain 9612 chr2 243199373 + 241597407 241597565 L1MC1 2226 - 179 338 162526 55 25 27 51 1 0 26 chain 24173 chr2 243199373 + 241597610 241598089 L1PB1 5432 - 13 454 109357 15 1 0 13 1 0 21 1 0 24 2 0 11 55 39 14 6 5 37 6 5 14 2 1 53 2 0 7 7 3 11 1 0 8 1 0 24 2 0 11 7 0 20 1 4 101 chain 16288 chr2 243199373 + 241598103 241598309 L1PB1 5432 + 4769 4976 137509 34 3 4 169 chain 7755 chr2 243199373 + 241602771 241602865 MER54B 801 + 702 796 172575 94 chain 6610 chr2 243199373 + 241609362 241609469 MLT1C 463 + 96 205 180373 29 0 1 43 13 14 22 chain 65473 chr2 243199373 + 241610761 241611508 LTR5A 1029 + 0 746 50348 150 1 0 596 chain 7621 chr2 243199373 + 241746866 241747060 MER2 342 - 127 322 173400 58 6 0 23 29 28 15 36 44 27 chain 11182 chr2 243199373 + 241749186 241749311 L1PA6 6164 + 6037 6162 155504 125 chain 119036 chr2 243199373 + 241784467 241786054 THE1C-int 1605 + 15 1605 31394 312 0 6 99 13 20 59 0 1 372 12 8 60 2 3 42 1 2 146 1 0 7 34 24 386 0 1 32 0 1 9 chain 9906 chr2 243199373 + 241786473 241786629 LTR49 580 - 421 578 161039 23 2 1 21 0 1 37 1 2 47 1 0 5 3 4 16 chain 6920 chr2 243199373 + 241794347 241794553 MER66A 478 - 61 339 178041 16 93 132 71 1 34 25 chain 3049 chr2 243199373 + 241807785 241807827 MER58A 224 + 37 78 224017 12 1 0 29 chain 59319 chr2 243199373 + 241879909 241880679 L1PB 1623 + 685 1466 53212 435 9 19 158 0 3 146 10 8 12 chain 17826 chr2 243199373 + 241971848 241972062 L1PA5 6144 + 5931 6144 133311 64 3 2 147 chain 9057 chr2 243199373 + 241983123 241983277 MER58A 224 - 9 162 165279 35 1 0 4 0 1 24 6 9 19 13 9 52 chain 24139 chr2 243199373 + 241986284 241986586 AluSc5 308 + 5 302 109526 197 2 0 39 5 0 32 0 2 27 chain 24621 chr2 243199373 + 242023549 242023868 AluSq10 312 - 10 312 106887 191 18 1 110 chain 3965 chr2 243199373 + 242059464 242059543 L1MB7 1623 + 904 985 207902 11 6 7 22 9 10 31 chain 41280 chr2 243199373 + 242158044 242158536 LTR2C 499 - 0 499 67559 64 1 0 94 0 1 159 1 4 53 0 4 120 chain 22465 chr2 243199373 + 242268161 242268435 AluSp 311 + 7 282 118168 40 1 2 233 chain 44789 chr2 243199373 + 242268934 242269510 LTR10C 591 - 0 581 63306 81 0 2 59 17 6 152 0 13 216 0 1 51 chain 21770 chr2 243199373 + 242297344 242297630 AluSz6 309 + 22 304 121133 121 0 1 153 5 0 7 chain 28112 chr2 243199373 + 242316744 242317057 AluYb8 318 - 7 318 92599 248 2 0 63 chain 6205 chr2 243199373 + 242317062 242317143 MER2 342 - 126 207 183543 81 chain 118704 chr2 243199373 + 242335450 242336759 L1PA3long 6157 + 4847 6157 31530 458 1 2 850 chain 3818 chr2 243199373 + 242366939 242367031 MER2 342 + 229 320 210113 36 36 35 20 chain 69045 chr2 243199373 + 242464915 242465923 MER11A 1151 + 0 1151 48790 45 10 109 135 8 5 30 0 2 41 0 2 19 0 1 54 0 1 90 12 13 12 1 0 116 4 5 128 1 35 10 47 14 20 0 36 13 0 2 8 8 3 24 0 1 100 0 2 9 1 0 22 0 4 40 chain 4111 chr2 243199373 + 242475341 242475389 MER63D 473 + 144 192 205764 48 chain 5156 chr2 243199373 + 242476569 242476628 MER75 514 + 329 388 193483 59 chain 9194 chr2 243199373 + 242476807 242476920 MER75B 242 + 119 231 164587 97 1 0 15 chain 6801 chr2 243199373 + 242477059 242477347 MER47B 469 + 55 405 178949 34 0 7 14 0 1 14 156 226 42 16 0 12 chain 7853 chr2 243199373 + 242524382 242524472 5S 121 + 0 90 171972 90 chain 22892 chr2 243199373 + 242543676 242543954 AluSp 311 - 23 300 116139 111 2 1 165 chain 23061 chr2 243199373 + 242565585 242565885 AluSc5 308 + 10 308 115349 247 6 4 47 chain 23078 chr2 243199373 + 242569950 242570212 AluSp 311 + 39 300 115255 72 1 0 189 chain 8667 chr2 243199373 + 242585967 242586172 MER47B 469 + 95 369 167387 28 0 7 8 7 0 8 12 30 18 0 3 7 47 95 70 chain 26167 chr2 243199373 + 242647618 242647921 AluYk4 311 - 8 311 99336 303 chain 82475 chr2 243199373 + 242671487 242672474 LTR13 1007 - 1 1007 42553 79 0 2 112 17 18 58 0 1 49 0 4 54 2 1 365 0 5 181 0 7 70 chain 22953 chr2 243199373 + 242675199 242675475 AluSc 308 - 32 308 115837 276 chain 3253 chr2 243199373 + 242700635 242700671 MER2 342 + 186 222 219931 36 chain 50970 chr2 243199373 + 242711463 242712088 LTR13A 966 - 0 966 58330 430 6 345 177 0 2 12 chain 167663 chr2 243199373 + 242719414 242722263 MER4-int 2692 - 283 2572 22321 61 4 46 18 0 5 16 0 1 135 319 0 235 0 2 110 2 1 85 0 2 184 6 1 16 0 1 4 4 9 151 2 0 8 2 1 95 1 3 436 0 22 42 0 1 158 1 11 56 0 2 62 0 2 74 341 0 72 0 12 149 chain 55051 chr2 243199373 + 242729897 242730641 MER4E 760 + 0 752 55675 21 1 2 128 22 25 110 1 5 103 2 0 220 7 6 81 0 1 35 1 3 12 chain 82301 chr2 243199373 + 242730649 242732153 MER4-int 2692 + 1547 2688 42624 103 5 4 26 12 7 95 1 0 99 14 16 242 1 2 45 0 1 85 369 10 5 2 0 23 0 1 4 1 0 100 1 4 47 2 1 30 4 5 23 0 1 135 8 0 11 0 2 6 0 3 5 chain 4221 chr2 243199373 + 242732627 242732672 MER4A1 472 - 12 57 204292 45 chain 28410 chr2 243199373 + 242740375 242740764 L1PA8 5853 - 1 384 91537 86 7 6 16 1 0 65 10 9 62 2 0 44 1 0 95 chain 100485 chr2 243199373 + 242770549 242772075 L1PA5 6144 + 4988 6140 36634 179 374 0 973 chain 31505 chr2 243199373 + 242770743 242771080 L1PA3long 6157 + 5805 6142 81634 337 chain 12225 chr2 243199373 + 242774187 242774401 L1PA8 5853 + 5637 5853 151320 45 1 0 5 20 15 41 1 0 13 6 5 60 0 9 6 1 2 15 chain 43704 chr2 243199373 + 242777891 242778486 LTR12F 595 - 0 595 64562 21 1 2 203 0 1 153 14 5 25 0 8 16 16 14 43 0 1 103 chain 8033 chr2 243199373 + 242782360 242783391 MER49 923 - 435 867 170849 54 78 72 31 761 168 27 41 41 39 chain 87813 chr2 243199373 + 242817445 242818441 LTR13 1007 - 7 1007 40444 146 4 0 146 0 4 75 1 0 366 0 5 258 chain 195177 chr2 243199373 + 242859328 242862137 L1PREC2 3366 + 144 2963 19569 20 19 16 20 5 9 23 1 0 13 1 0 10 1 0 5 1 0 21 15 15 103 1 0 279 6 8 160 1 0 413 2 0 5 16 18 17 1 0 11 5 8 20 0 8 133 12 24 97 21 41 129 0 1 126 0 1 141 0 2 28 0 1 474 2 1 47 1 0 148 5 0 7 19 15 44 1 0 44 1 0 4 3 0 13 29 21 17 6 1 14 21 19 12 4 1 11 chain 18625 chr2 243199373 + 242863308 242863582 L1PA8 5853 + 5588 5847 131152 20 2 0 70 2 1 14 3 2 43 1 0 22 1 0 37 10 1 49 chain 4024 chr2 243199373 + 242897882 242897931 MER4A1 472 + 404 453 204732 49 chain 22361 chr2 243199373 + 242897931 242898295 MER4A1 472 - 80 472 118668 21 20 22 23 24 28 37 0 21 218 8 9 13 chain 8702 chr2 243199373 + 242899286 242899411 MSTB 430 - 15 146 167182 22 0 1 75 8 13 20 chain 8705 chr2 243199373 + 242900731 242900862 THE1C 375 - 211 358 167170 50 0 1 4 1 2 14 7 21 55 chain 18778 chr2 243199373 + 242914427 242914728 THE1B 368 + 0 306 130745 68 1 2 43 0 1 42 1 0 13 10 9 20 0 3 8 1 5 10 8 7 11 2 1 63 chain 15373 chr2 243199373 + 242920319 242920538 MER30 238 + 0 236 140283 103 10 0 7 7 36 40 2 0 50 chain 6119 chr2 243199373 + 242933415 242933850 MSTA 426 + 0 405 184271 16 50 51 27 258 226 45 17 18 22 chain 19358 chr2 243199373 + 242991767 242991981 L1PA4 6152 - 263 477 129052 214 chain 11681 chr2 243199373 + 242991981 242992115 L1PA4 6152 + 6013 6152 153554 128 0 5 6 chain 18724 chr2 243199373 + 242994178 242994388 L1PA4 6152 + 5941 6151 130895 210 chain 58101 chr2 243199373 + 243003607 243004352 SVA_A 1864 - 0 1538 53925 537 38 268 73 3 0 17 10 576 67 chain 23701 chr2 243199373 + 243062683 243062930 AluYa5 310 - 8 255 112031 247 chain 19957 chr2 243199373 + 243098651 243098913 AluY 311 + 57 311 127279 66 1 0 3 7 0 185 chain 3712 chr2 243199373 + 243157487 243157530 MER72 723 + 680 723 211756 43 chain 6682 chr2 243199373 + 243188459 243188587 MSTB1 431 + 165 311 179820 37 8 25 26 18 19 39 chain 26817 chr3 198022430 + 66971 67376 MER57B1 401 + 0 401 96922 136 10 2 52 19 20 42 4 1 68 1 0 17 0 7 56 chain 23324 chr3 198022430 + 81147 81416 AluY 311 + 36 306 114060 90 0 1 179 chain 25186 chr3 198022430 + 90110 90468 THE1C 375 + 0 352 103822 125 3 0 24 16 15 22 0 1 10 3 0 155 chain 45494 chr3 198022430 + 93015 93601 LTR10C 591 + 0 590 62505 49 0 1 276 0 1 17 24 25 188 0 1 32 chain 15254 chr3 198022430 + 153791 154105 MER61B 427 - 36 383 140619 80 3 0 6 6 9 23 90 123 106 chain 42398 chr3 198022430 + 155585 156116 MER41A 554 + 8 554 66152 140 0 1 25 0 3 137 1 0 83 11 23 134 chain 15563 chr3 198022430 + 251247 251460 L1PA5 6144 - 2 214 139693 7 4 0 125 6 10 9 2 0 20 0 1 40 chain 4238 chr3 198022430 + 256815 256869 L1MA6 2487 + 2232 2284 204045 45 2 0 7 chain 12848 chr3 198022430 + 276699 276838 L1PA2 6032 - 13 153 148854 80 0 1 59 chain 94137 chr3 198022430 + 281303 282688 L1PB1 5432 - 2 1362 38318 8 2 0 18 1 0 7 3 6 21 1 0 16 25 22 5 2 0 16 9 0 11 2 0 4 1 0 13 0 8 39 1 0 15 2 1 50 4 2 8 4 0 9 11 10 27 1 0 8 4 3 299 2 0 96 2 0 80 3 0 142 1 6 128 6 5 132 1 0 145 chain 41365 chr3 198022430 + 327932 328834 MER41B 635 - 38 635 67452 75 317 0 36 44 43 7 0 1 29 0 1 134 0 10 134 1 2 125 chain 250106 chr3 198022430 + 343434 346593 L1PA7 6471 - 4 3171 16247 6 4 0 137 15 17 175 0 1 135 0 2 373 1 0 45 7 10 222 1 2 93 0 1 36 2 1 6 0 1 255 1 0 132 0 4 38 0 3 104 0 4 159 0 8 382 6 5 6 0 1 13 15 0 80 7 6 171 1 2 531 chain 54293 chr3 198022430 + 379063 379713 L1PA5 6144 - 12 659 56166 326 0 1 64 7 0 164 1 4 88 chain 4954 chr3 198022430 + 397518 397578 MIR 256 + 23 83 195654 60 chain 44263 chr3 198022430 + 402273 402769 L1PA2 6032 - 1 496 63865 143 2 1 351 chain 3668 chr3 198022430 + 433633 433679 MER58A 224 + 24 70 212439 46 chain 20976 chr3 198022430 + 434673 434930 AluY 311 + 39 297 124005 93 7 8 157 chain 9271 chr3 198022430 + 481818 481925 HERVL-int 5654 - 1239 1346 164218 107 chain 23492 chr3 198022430 + 482064 482438 MLT2A1 477 - 97 477 113167 79 0 7 18 39 33 39 0 1 24 0 1 8 5 2 117 13 18 5 0 1 27 chain 453762 chr3 198022430 + 482438 488118 HERVL-int 5654 - 0 5654 8626 97 0 5 326 4 1 40 1 2 331 0 1 111 17 2 137 4 0 850 42 12 5 3 0 165 0 1 646 0 1 458 0 1 146 0 1 100 6 5 120 15 15 951 0 1 252 0 5 88 0 12 117 16 2 8 0 12 133 0 1 40 0 1 166 4 5 281 chain 32533 chr3 198022430 + 488121 488546 MLT2A1 477 - 2 477 79969 36 0 3 9 0 47 176 0 1 24 0 1 8 5 2 35 0 1 132 chain 153166 chr3 198022430 + 519953 521823 L1PA8A 6298 + 4408 6291 24206 417 1 0 217 8 17 379 0 1 45 0 3 16 1 0 593 0 1 31 11 10 44 3 4 41 0 1 63 chain 301486 chr3 198022430 + 547818 551968 L1PA8 5853 - 0 4169 13346 5 0 1 78 8 9 19 2 1 38 0 1 13 47 32 47 3 0 45 6 5 199 14 11 262 0 1 11 15 20 46 0 2 2 5 0 257 0 1 8 1 0 241 1 3 64 3 7 46 9 8 135 0 1 24 0 5 436 0 1 5 1 0 285 0 1 9 0 11 516 4 8 13 7 6 31 5 6 119 1 3 116 0 1 512 5 6 66 0 3 30 4 5 125 1 0 10 0 2 195 chain 24773 chr3 198022430 + 574531 574894 THE1B 368 + 0 368 106045 10 0 1 158 1 0 27 11 18 10 13 12 4 1 0 128 chain 63513 chr3 198022430 + 576869 578003 LTR12D 1347 - 0 1347 51242 25 10 43 18 49 180 28 112 15 16 4 0 22 24 1 160 10 11 112 0 17 67 0 109 82 6 7 98 0 36 22 7 16 55 2 0 15 6 8 184 chain 14992 chr3 198022430 + 590887 591054 L1PA3long 6157 - 0 168 141348 91 0 1 76 chain 3839 chr3 198022430 + 612167 612217 MER20 218 - 0 51 209800 42 0 1 8 chain 189443 chr3 198022430 + 621576 623805 L1P1 4361 - 1608 3839 20102 371 0 4 180 6 9 1139 0 2 289 5 6 52 7 0 127 1 0 52 chain 144027 chr3 198022430 + 644764 646827 L1PB1 5432 - 106 2103 25474 18 16 6 6 3 0 13 5 4 43 1 0 15 2 1 41 25 23 12 3 2 7 1 0 21 46 11 19 0 1 10 0 1 259 0 1 21 1 2 80 0 1 73 7 3 387 5 4 19 0 1 482 0 2 8 9 0 5 7 0 241 0 2 152 chain 314231 chr3 198022430 + 652179 655724 L1PA5 6144 - 16 3576 12841 426 0 11 1033 1 0 600 2 3 4 1 0 881 1 0 37 0 5 472 0 1 87 chain 6944 chr3 198022430 + 668834 668913 L1PA16 3655 - 84 163 177867 79 chain 159460 chr3 198022430 + 694258 696594 L1PA7 6471 + 4432 6468 23408 41 1 0 4 0 1 45 0 10 280 0 4 527 0 1 22 12 9 251 7 3 13 8 9 89 0 2 55 316 0 159 2 3 172 1 0 219 0 7 103 2 0 7 chain 5601 chr3 198022430 + 722648 722716 L1MA5A 2387 - 81 148 189071 10 1 0 57 chain 12721 chr3 198022430 + 728582 728719 L1PA4 6152 - 6 143 149362 137 chain 75593 chr3 198022430 + 739468 740275 L1PA2 6032 + 5220 6027 45721 807 chain 125060 chr3 198022430 + 759568 761141 L1PA7 6471 + 4420 6468 29377 67 0 13 303 0 1 178 0 3 241 6 7 385 1 0 46 0 462 87 1 0 15 0 2 82 6 4 102 0 1 43 4 0 6 chain 22588 chr3 198022430 + 773771 774104 THE1B 368 - 19 368 117644 82 1 0 23 19 17 10 0 19 29 1 0 61 1 0 30 1 2 67 0 1 8 chain 162857 chr3 198022430 + 801637 803424 L1PA3long 6157 - 0 1788 22957 1486 0 1 301 chain 96216 chr3 198022430 + 803424 804495 L1PA3long 6157 + 3296 4369 37760 301 0 1 120 0 1 650 chain 3111 chr3 198022430 + 813081 813114 L1MDa 1598 + 1116 1149 222715 33 chain 88234 chr3 198022430 + 814249 815257 L1PA4 6152 - 1 1015 40287 112 0 1 28 0 7 8 3 0 177 0 1 680 chain 85921 chr3 198022430 + 826136 827209 L1P2 5180 - 2239 3326 41187 45 5 19 341 0 1 211 2 0 216 1 2 252 chain 23745 chr3 198022430 + 848905 849346 MER75 514 + 70 514 111804 159 127 129 139 0 1 16 chain 542281 chr3 198022430 + 851060 857085 L1PA3long 6157 + 0 6156 2459 152 0 1 373 4 0 250 0 128 148 0 2 1338 0 4 866 0 1 2044 1 0 849 chain 498405 chr3 198022430 + 857884 864301 L1PA7 6471 + 0 6465 6933 799 2 6 348 0 1 56 0 4 26 0 4 280 0 1 104 0 2 175 1 0 4 18 17 342 0 1 925 1 5 59 12 13 126 4 3 4 0 1 123 0 1 119 0 4 273 0 1 9 6 5 832 1 5 277 1 2 27 11 9 266 2 1 5 0 1 12 1 3 340 3 17 63 0 5 133 8 9 288 0 1 219 0 1 40 12 11 49 3 0 8 chain 6519 chr3 198022430 + 871069 871148 LTR28 1034 + 21 101 181081 6 0 1 73 chain 10345 chr3 198022430 + 917030 917154 L1P1 4361 - 4236 4360 158922 124 chain 25092 chr3 198022430 + 925930 926294 L1PA8 5853 - 0 357 104335 93 1 0 15 1 0 45 25 22 69 2 0 45 1 0 48 0 1 19 chain 31245 chr3 198022430 + 932376 932788 LTR7 482 - 0 482 82090 170 1 0 4 0 1 13 0 31 38 0 1 109 8 46 69 chain 290635 chr3 198022430 + 934043 937657 HERVH-int 3825 - 0 3800 13981 225 0 2 36 1 0 144 0 1 4 1 0 75 8 218 39 9 11 1066 0 4 284 4 31 215 1 0 13 0 2 24 9 0 45 0 1 159 15 0 445 0 3 12 0 2 8 1 2 25 7 27 16 44 0 30 14 11 14 3 0 12 1 0 15 9 1 14 4 0 9 1 0 10 1 0 40 1 0 150 0 4 351 chain 84505 chr3 198022430 + 938391 939476 L1PA8 5853 - 0 1080 41713 87 7 6 19 2 1 52 4 3 6 1 0 71 2 0 41 5 4 87 1 0 42 0 1 259 9 12 153 6 5 231 chain 12432 chr3 198022430 + 941083 941220 L1PA4 6152 + 6014 6151 150518 137 chain 19870 chr3 198022430 + 947517 947865 THE1C 375 - 25 373 127591 152 33 30 43 0 1 18 1 0 11 34 37 56 chain 31900 chr3 198022430 + 953285 953696 LTR7 482 - 0 482 81011 127 0 1 62 0 31 36 0 1 109 8 46 69 chain 30576 chr3 198022430 + 954393 954888 LTR10A 586 + 24 517 83249 35 0 8 7 0 1 28 0 21 16 1 0 66 5 6 23 61 6 31 11 21 127 0 13 84 chain 35343 chr3 198022430 + 955257 955725 MER4A1 472 + 0 472 75746 220 0 1 5 14 16 98 0 1 131 chain 34554 chr3 198022430 + 971311 971762 MLT2A1 477 + 0 477 76823 57 1 2 83 0 1 28 3 0 153 1 0 83 1 29 41 chain 2029 chr3 198022430 + 1005061 1005155 MLT1H2 457 + 355 432 238359 9 8 0 4 9 0 19 32 32 13 chain 25594 chr3 198022430 + 1022880 1023235 THE1B 368 - 0 368 101755 65 0 1 133 1 0 102 8 23 31 3 1 12 chain 34311 chr3 198022430 + 1025429 1025940 MLT2A1 477 - 0 477 77189 53 37 11 29 5 0 214 8 5 165 chain 350866 chr3 198022430 + 1025940 1030340 HERVL-int 5654 - 0 4483 11572 289 1 0 139 20 9 182 0 1 123 12 5 112 0 1 440 0 14 246 2 0 125 0 4 223 14 10 70 0 1 395 0 6 336 0 1 5 0 3 70 0 1 271 3 6 250 0 1 558 1 3 13 6 10 5 0 2 26 0 15 379 2 51 82 chain 9476 chr3 198022430 + 1039771 1040301 MER21B 843 + 0 525 163190 17 10 0 12 91 104 83 271 263 46 chain 381333 chr3 198022430 + 1071600 1076641 L1PA8 5853 - 0 5803 10720 93 1 0 18 1 0 22 10 24 6 15 0 11 3 2 69 2 0 46 1 0 365 1 4 184 2 0 380 1 0 4 4 5 509 0 10 36 0 1 338 1 5 60 0 2 7 12 21 105 0 1 128 0 2 8 8 7 77 0 4 85 1 0 223 3 4 46 3 7 315 5 6 78 1 755 182 1 2 106 0 2 437 4 5 149 1 6 111 42 41 136 0 4 108 0 3 179 3 7 181 72 33 6 1 0 10 2 0 22 chain 24556 chr3 198022430 + 1080733 1081018 AluY 311 + 2 289 107218 130 0 1 20 0 1 135 chain 29562 chr3 198022430 + 1084653 1085066 MLT2A1 477 - 62 477 86376 18 6 0 12 0 2 79 8 4 93 4 13 24 4 1 150 0 4 15 chain 456945 chr3 198022430 + 1099580 1105329 L1PA7 6471 - 12 6466 8515 135 0 14 454 0 28 56 0 10 141 1 0 14 0 10 12 0 1 32 4 0 698 6 10 36 0 5 71 1 2 71 14 2 36 1 0 426 6 7 30 7 8 78 0 1 61 2 3 124 0 9 321 0 4 26 0 1 24 0 1 65 4 5 4 1 0 240 0 19 48 0 3 96 0 1 308 0 4 23 0 1 36 5 6 309 2 3 828 0 3 309 10 602 104 0 1 74 4 0 205 53 57 43 0 5 90 chain 3987 chr3 198022430 + 1107274 1107338 7SLRNA 320 - 32 97 207584 16 7 8 41 chain 12930 chr3 198022430 + 1139778 1139927 L1PA3long 6157 + 6006 6155 148503 149 chain 4168 chr3 198022430 + 1164703 1164904 L1MB5 1630 - 1367 1568 204992 23 114 118 11 11 7 42 chain 24953 chr3 198022430 + 1208351 1208728 L1PA8 5853 + 5478 5847 105040 86 1 0 32 1 0 12 2 0 49 0 1 4 2 1 16 1 0 6 15 14 41 2 1 19 7 6 81 chain 13550 chr3 198022430 + 1217857 1218088 AluSp 311 + 38 276 146164 99 15 15 58 36 43 23 chain 157907 chr3 198022430 + 1278792 1280927 L1PBa 3878 + 736 3748 23607 119 0 4 114 23 14 513 0 3 30 0 1 80 4 0 7 36 0 21 1 0 785 0 302 244 12 632 112 1 0 22 2 0 9 chain 38889 chr3 198022430 + 1282420 1282921 LTR7Y 441 - 0 441 70882 69 30 1 206 31 0 165 chain 198812 chr3 198022430 + 1283676 1286304 HERVH-int 3825 - 705 3825 19296 379 0 1 1024 4 31 386 0 33 28 24 9 145 13 14 291 1 0 24 1 151 24 1 0 10 1 0 35 1 57 42 123 365 71 chain 39796 chr3 198022430 + 1286304 1286776 LTR7Y 441 - 0 441 69631 276 31 0 165 chain 14742 chr3 198022430 + 1287022 1287358 L1PB1 5432 + 5114 5422 142133 24 1 0 6 1 0 14 16 10 52 19 17 27 0 1 16 1 0 19 2 0 9 8 0 17 3 1 5 1 0 7 22 20 11 1 0 21 1 0 13 1 0 18 chain 13010 chr3 198022430 + 1317312 1317480 MER1A 529 - 194 359 148206 160 3 0 5 chain 35120 chr3 198022430 + 1327886 1328359 L1PA7 6471 - 4 436 76028 377 44 3 52 chain 3626 chr3 198022430 + 1407361 1407401 MADE1 96 + 51 91 213217 40 chain 12853 chr3 198022430 + 1411969 1412117 L1PA3long 6157 + 5934 6082 148832 148 chain 547330 chr3 198022430 + 1429244 1435252 L1PA2 6032 + 0 6032 1791 53 1 13 832 1 0 832 0 1 257 2 0 164 0 5 897 0 1 82 0 4 252 0 2 2618 3 5 14 chain 23195 chr3 198022430 + 1452673 1452956 L1PA8 5853 - 0 278 114696 93 1 0 16 1 0 65 1 0 71 2 0 33 chain 36100 chr3 198022430 + 1497007 1497460 LTR12_ 688 + 0 688 74764 142 1 235 17 0 1 293 chain 199316 chr3 198022430 + 1500756 1503048 L1PA5 6144 - 9 2305 19258 176 1 0 4 5 7 715 0 1 1352 0 1 35 0 1 4 chain 6408 chr3 198022430 + 1516170 1516373 L1PB 1623 + 1411 1575 181955 35 1 0 7 2 1 30 5 6 12 4 0 13 1 0 5 66 33 22 chain 535926 chr3 198022430 + 1519175 1525308 L1PA5 6144 + 3 6144 3454 1232 2 1 206 4 8 79 0 2 1214 1 2 429 1 0 2118 0 1 515 0 2 332 chain 63667 chr3 198022430 + 1543017 1543874 L1PB1 5432 + 4131 4985 51162 39 1 0 41 1 0 274 12 13 128 4 0 106 7 8 157 0 1 87 chain 78836 chr3 198022430 + 1578190 1579189 MER11A 1151 + 0 1151 44130 61 1 100 130 0 2 391 0 1 135 0 50 101 0 1 8 1 0 26 1 0 79 7 6 11 0 2 47 chain 25329 chr3 198022430 + 1601884 1602247 THE1C 375 + 0 361 103077 101 33 30 197 0 2 20 1 0 11 chain 148476 chr3 198022430 + 1606564 1608224 L1PA3long 6157 + 4518 6157 24820 265 22 0 1225 0 1 148 chain 19933 chr3 198022430 + 1625447 1625675 AluY 311 + 58 286 127350 228 chain 67868 chr3 198022430 + 1628645 1629735 MER11A 1151 + 0 1119 49301 85 1 92 53 1 0 33 13 12 17 7 3 29 0 2 114 22 4 9 1 0 85 0 1 145 8 10 126 9 42 22 18 0 36 0 1 5 60 1 56 12 13 123 chain 329180 chr3 198022430 + 1691631 1695705 L1PA7 6471 - 7 5449 12232 648 1 0 196 1 6 44 1 2 20 1 0 437 0 2 149 4 5 105 0 1 18 0 1 225 12 1363 43 4 7 5 0 1 518 1 0 352 0 1 65 0 4 1224 chain 4165 chr3 198022430 + 1696291 1696449 L1P2 5180 + 1859 2501 21686 38 2 487 6 1 0 111 chain 183248 chr3 198022430 + 1696465 1698505 L1PA2 6032 - 2150 4189 20656 820 0 1 348 2 0 870 chain 15176 chr3 198022430 + 1698505 1698673 L1PA2 6032 + 3890 4058 140581 168 chain 179291 chr3 198022430 + 1698673 1700632 L1PA2 6032 + 4060 6019 21051 1959 chain 57816 chr3 198022430 + 1700669 1702862 L1P2 5180 + 2501 4710 21686 285 0 4 110 0 11 134 0 1 9 21 26 40 1 2 108 7 11 121 7 9 146 13 0 373 0 1 708 0 1 70 2 1 38 chain 322466 chr3 198022430 + 1712586 1716157 L1PA3long 6157 - 15 3604 12502 834 0 4 532 0 1 873 0 2 632 0 1 621 0 10 79 chain 11382 chr3 198022430 + 1721314 1721441 L1PA4 6152 - 9 136 154774 127 chain 529010 chr3 198022430 + 1723368 1729467 L1PA4 6152 + 25 6143 4300 2755 1 7 51 0 1 670 1 0 179 1 0 232 0 1 967 0 1 118 0 14 545 1 0 252 2 1 324 chain 5244 chr3 198022430 + 1746745 1746836 L1P3 4156 - 3615 3701 192581 34 15 11 33 1 0 8 chain 66500 chr3 198022430 + 1748039 1748897 L1PA7 6471 + 5595 6457 49867 26 0 3 688 5 6 41 3 0 5 0 3 90 chain 3024 chr3 198022430 + 1755589 1755623 MER21B 843 - 149 183 224570 34 chain 34998 chr3 198022430 + 1760452 1760937 LTR12F 595 - 0 595 76192 241 1 0 16 0 1 28 5 25 33 13 79 23 0 16 28 6 14 91 chain 5582 chr3 198022430 + 1766452 1766532 LTR24B 570 - 489 570 189258 34 1 3 6 1 0 38 chain 26794 chr3 198022430 + 1778762 1779059 AluYa5 310 - 11 310 97002 32 0 2 265 chain 11737 chr3 198022430 + 1794180 1794412 MER50 708 + 452 686 153314 32 1 0 8 26 27 23 0 4 8 4 0 82 4 5 19 7 8 18 chain 79012 chr3 198022430 + 1795612 1796709 MER11A 1151 - 7 1145 44056 52 9 7 89 0 1 45 11 5 55 1 0 7 0 1 20 3 0 56 2 1 34 68 0 196 0 1 29 0 7 233 0 11 58 0 93 56 0 8 73 chain 41332 chr3 198022430 + 1849612 1850103 MER9a1 513 - 0 513 67495 246 1 23 244 chain 64717 chr3 198022430 + 1853004 1853719 L1PA3long 6157 - 343 1058 50691 715 chain 31261 chr3 198022430 + 1853719 1854071 L1PA3long 6157 + 5797 6149 82063 352 chain 237595 chr3 198022430 + 1891662 1894372 L1PA5 6144 - 0 2722 16900 258 0 1 120 1 2 464 0 8 946 0 4 666 2 0 126 0 1 35 5 4 87 chain 17513 chr3 198022430 + 1905730 1905974 L1PA8 5853 - 0 242 134230 84 7 6 22 2 1 41 1 2 17 1 0 69 chain 34278 chr3 198022430 + 1907086 1907533 L1PA8 5853 + 5413 5853 77240 151 1 0 45 2 0 66 9 8 5 1 0 55 1 0 17 1 0 93 chain 9877 chr3 198022430 + 1918338 1918728 Charlie1a 1436 - 516 930 161189 105 199 218 8 1 0 23 33 38 6 0 1 15 chain 12694 chr3 198022430 + 1930238 1930471 LTR10B1 532 + 243 480 149472 122 64 68 47 chain 16676 chr3 198022430 + 1934398 1934649 L1MA2 4263 + 3850 4094 136473 106 11 9 50 0 1 42 7 0 11 1 2 23 chain 505225 chr3 198022430 + 1955192 1961321 L1PA6 6164 - 4 6160 6517 13 2 0 8 4 0 172 0 2 649 0 1 4 0 3 8 0 4 490 0 2 411 0 1 23 0 4 660 0 4 383 1 0 4 5 6 41 0 4 72 8 5 410 0 1 254 0 2 185 1 0 173 0 7 136 0 1 96 0 5 91 8 11 359 0 2 209 8 0 751 7 7 303 1 0 179 chain 427171 chr3 198022430 + 1963015 1968607 HERVL-int 5654 + 0 5323 9368 40 1 0 375 6 8 39 311 0 408 20 25 223 0 3 266 0 3 225 5 4 105 0 2 166 11 1 1045 5 6 66 1 0 89 0 6 497 2 0 79 0 1 342 1 2 4 1 0 11 0 1 248 14 39 590 0 5 168 6 8 125 0 1 97 chain 28757 chr3 198022430 + 1969352 1969692 HERVL-int 5654 - 0 340 90086 340 chain 380548 chr3 198022430 + 1971688 1979900 L1PA7 6471 + 671 6459 10736 9 0 47 187 0 6 273 6 876 33 0 2 19 2 0 10 0 1 211 0 10 277 2 0 6 6 9 449 0 4 262 0 2 128 8 5 32 1 0 245 0 1 92 5 0 33 1 0 31 0 1 77 1 0 616 3359 0 236 5 4 72 0 1 6 5 0 72 1 2 80 0 1 528 0 2 55 6 9 443 0 1 84 0 1 91 3 0 6 0 2 138 chain 140051 chr3 198022430 + 1974736 1976536 L1PA7 6471 + 4629 6467 26136 40 5 9 86 0 3 23 0 4 9 0 2 60 0 6 709 0 7 12 0 4 11 0 3 175 25 29 63 0 1 582 chain 34751 chr3 198022430 + 1976542 1976959 L1PA7 6471 + 2668 3086 76542 9 0 2 43 5 4 360 chain 49052 chr3 198022430 + 1976969 1977586 L1PA7 6471 + 3100 3718 59708 268 1 0 131 1 2 110 0 1 106 chain 39543 chr3 198022430 + 1977586 1978068 L1PA7 6471 + 4137 4625 69504 137 0 2 228 0 4 117 chain 84676 chr3 198022430 + 1998972 1999937 L1PA5 6144 - 0 978 41650 11 1 3 124 1 12 828 chain 3444 chr3 198022430 + 2011881 2011922 MER3 215 + 79 120 216286 41 chain 177723 chr3 198022430 + 2017255 2019712 L1PA10 4194 + 349 4150 21187 7 1 0 7 1 0 11 1 0 8 5 0 11 8 1 9 1 0 85 3 0 130 16 7 141 28 50 272 2 0 74 1 3 346 3 0 7 22 31 153 0 2 161 7 6 149 10 1369 225 0 1 119 0 2 287 9 0 59 4 0 23 18 11 26 0 1 7 chain 150737 chr3 198022430 + 2048589 2050191 L1HS 6032 + 4430 6032 24510 1602 chain 72758 chr3 198022430 + 2102131 2102930 L1PA3long 6157 - 0 798 47143 5 0 2 8 3 0 783 chain 7475 chr3 198022430 + 2102930 2103016 L1PA3long 6157 + 5249 5339 171090 61 0 4 25 chain 129390 chr3 198022430 + 2125134 2126768 LTR12C 1709 + 0 1709 28227 17 0 1 263 1 6 442 44 0 45 1 2 4 1 0 56 2 1 11 4 0 33 0 1 51 1 2 4 1 0 69 4 0 34 0 1 69 10 7 92 0 21 175 0 102 200 chain 2726 chr3 198022430 + 2125857 2125901 LTR12C 1709 + 847 888 117181 1 4 0 33 0 1 6 chain 23237 chr3 198022430 + 2162924 2163198 AluSg 306 + 23 298 114507 224 0 1 50 chain 23460 chr3 198022430 + 2163583 2163853 AluYc 301 + 16 286 113315 95 2 0 10 0 1 18 0 1 145 chain 56799 chr3 198022430 + 2204784 2205639 L1PB2 3958 + 2818 3665 54654 106 1 0 202 5 6 138 0 1 36 2 0 27 2 0 25 13 16 50 15 13 13 4 0 48 42 41 77 1 0 48 chain 130257 chr3 198022430 + 2227618 2229106 L1PA5 6144 - 2 1494 28029 847 0 1 4 8 11 36 0 1 215 1 0 377 chain 61514 chr3 198022430 + 2233425 2234115 L1PA5 6144 - 9 700 52110 40 0 1 650 chain 20051 chr3 198022430 + 2234130 2234349 L1PA5 6144 + 5143 5362 126972 219 chain 115102 chr3 198022430 + 2295574 2296957 L1PA7 6471 - 2 1387 32757 8 2 0 331 1 0 395 0 1 110 0 3 64 0 1 472 chain 107822 chr3 198022430 + 2296957 2298312 L1P3 4156 + 2792 4139 34773 235 20 16 40 10 11 176 4 3 220 2 1 613 2 0 7 3 2 23 chain 3336 chr3 198022430 + 2302768 2302809 MER127 228 + 121 162 218310 41 chain 28101 chr3 198022430 + 2311641 2311932 AluYb9 318 - 27 318 92646 291 chain 156830 chr3 198022430 + 2336362 2338125 L1PA4 6152 - 0 1765 23752 991 0 1 670 0 1 102 chain 25614 chr3 198022430 + 2369820 2370110 AluY 311 + 0 303 101653 11 0 13 279 chain 22835 chr3 198022430 + 2374300 2374574 L1PA3long 6157 + 5892 6157 116423 113 7 0 147 2 0 5 chain 22491 chr3 198022430 + 2384162 2384533 THE1C 375 + 0 375 118061 40 0 5 117 41 42 25 21 20 97 1 0 29 chain 3413 chr3 198022430 + 2385088 2385139 MER51A 677 + 178 220 216891 21 9 0 21 chain 3016 chr3 198022430 + 2394946 2394979 LTR12C 1709 + 683 716 224703 33 chain 9193 chr3 198022430 + 2437239 2437417 L1PA16 3655 - 36 187 164593 16 5 0 7 27 8 10 2 0 86 1 0 24 chain 5613 chr3 198022430 + 2465607 2465701 L1PA5 6144 + 5974 6069 188945 27 19 20 48 chain 519483 chr3 198022430 + 2465748 2471824 L1PA5 6144 - 3 6074 5216 7 6 0 783 4 0 859 1 5 658 1 0 147 1 0 512 1 0 775 0 1 584 1 0 224 0 1 36 1 0 351 37 28 621 2 1 222 0 14 242 chain 6055 chr3 198022430 + 2481832 2481898 L1PA3long 6157 - 4 70 184778 66 chain 36823 chr3 198022430 + 2521014 2521470 LTR71A 459 + 0 459 73773 38 0 3 418 chain 10407 chr3 198022430 + 2527067 2527398 LTR12C 1709 + 932 1068 158657 80 195 0 56 chain 2928 chr3 198022430 + 2527167 2527202 LTR12C 1709 + 1073 1108 226555 35 chain 13145 chr3 198022430 + 2570973 2571155 L1MA5 2750 - 138 320 147661 39 2 3 8 1 0 132 chain 114740 chr3 198022430 + 2574819 2576137 L1PA5 6144 - 0 1362 32864 113 1 0 29 0 1 216 2 0 240 1 27 215 0 5 452 0 15 49 chain 27802 chr3 198022430 + 2587533 2588066 L1PA15 4387 + 3852 4366 93685 38 18 13 30 6 5 96 1 0 64 7 6 27 12 11 43 1 0 4 21 28 50 6 3 44 3 1 12 15 5 24 1 0 10 chain 187715 chr3 198022430 + 2589645 2591977 L1PA7 6471 - 810 3096 20271 45 1 0 38 23 0 35 1 0 46 1 2 510 1 0 350 0 1 76 25 0 145 0 1 171 3 4 234 1 0 4 0 1 427 0 1 195 chain 70424 chr3 198022430 + 2591977 2592795 L1PA7 6471 + 5653 6469 48201 660 1 0 6 2 1 149 chain 10657 chr3 198022430 + 2604713 2604841 L1PA16 3655 - 391 518 157580 63 1 0 64 chain 59415 chr3 198022430 + 2626853 2627524 L1PA4 6152 + 5471 6143 53162 536 1 2 134 chain 29458 chr3 198022430 + 2633037 2633347 AluYa5 310 - 0 310 86807 310 chain 21962 chr3 198022430 + 2634081 2634405 THE1B 368 + 0 322 120385 13 2 0 27 0 5 77 1 0 50 2 1 29 2 0 22 12 11 87 chain 131088 chr3 198022430 + 2641895 2643433 L1PA5 6144 - 6 1543 27837 77 0 1 49 19 21 1078 8 9 95 5 0 207 chain 83869 chr3 198022430 + 2643433 2644394 L1PA5 6144 + 3638 4603 41888 706 0 4 255 chain 8803 chr3 198022430 + 2653992 2654102 MER47A 366 - 161 271 166630 110 chain 51626 chr3 198022430 + 2657734 2658373 L1PA8A 6298 - 10 667 57878 20 0 1 83 1 0 15 1 2 130 0 17 389 chain 59944 chr3 198022430 + 2658373 2659102 L1PA8A 6298 + 4878 5610 52849 610 0 3 119 chain 21487 chr3 198022430 + 2663080 2663337 L1PA7 6471 + 6216 6466 122192 63 8 1 186 chain 38000 chr3 198022430 + 2677388 2677864 LOR1a 498 + 0 482 72132 104 0 6 372 chain 531597 chr3 198022430 + 2708279 2714419 L1PA5 6144 - 0 6138 4010 207 0 3 2049 0 2 713 1 0 515 0 1 348 1 0 495 1 0 19 0 2 217 0 3 448 1 2 107 7 5 28 8 1 144 17 0 71 2 3 602 10 24 129 chain 23091 chr3 198022430 + 2745704 2746005 AluSz 310 + 10 307 115192 41 4 0 113 1 0 5 0 1 137 chain 22670 chr3 198022430 + 2746806 2747069 AluY 311 + 36 300 117210 90 0 1 173 chain 7666 chr3 198022430 + 2805470 2805689 L1PA13 3608 - 60 252 173137 12 4 1 14 6 0 3 1 0 16 6 1 10 6 3 18 7 6 16 2 0 5 2 0 19 1 2 26 10 5 35 chain 25364 chr3 198022430 + 2841478 2841913 L1PB4 2604 - 1018 1445 102861 237 1 0 41 16 13 27 70 66 43 chain 73554 chr3 198022430 + 2856734 2857752 L1PB1 5432 + 4279 5281 46760 105 0 1 39 2 0 202 4 0 13 1 0 69 0 1 95 3 11 288 7 0 14 3 0 32 18 13 5 2 0 53 2 1 16 1 0 44 chain 13530 chr3 198022430 + 2878450 2878608 L1PA7 6471 + 6310 6468 146241 158 chain 88988 chr3 198022430 + 2957882 2958974 SVA_B 1603 - 0 1559 40008 6 3 0 604 9 525 21 51 0 370 1 6 27 chain 282010 chr3 198022430 + 3086317 3089638 L1P1 4361 + 4 3308 14535 276 6 0 77 24 3 73 1 0 36 9 11 53 5 11 571 0 1 1064 0 1 14 0 2 110 1 0 1001 chain 15037 chr3 198022430 + 3092632 3092856 MER30 238 + 0 238 141215 93 9 33 6 4 0 7 3 0 53 3 0 46 chain 3498 chr3 198022430 + 3104794 3104853 MER53 195 - 131 192 215380 25 7 9 27 chain 45991 chr3 198022430 + 3169539 3170499 PABL_A 660 - 9 660 62050 59 14 16 44 0 1 107 5 12 221 319 0 83 0 1 11 4 0 57 0 3 36 chain 115543 chr3 198022430 + 3173146 3174379 L1HS 6032 + 4799 6032 32595 1233 chain 6067 chr3 198022430 + 3218720 3218829 MER20 218 + 93 208 184681 56 14 17 22 4 7 13 chain 4633 chr3 198022430 + 3235183 3235246 MER41B 635 + 481 545 199272 29 1 2 33 chain 15890 chr3 198022430 + 3241521 3241863 L1PB1 5432 - 36 347 138683 5 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 20 7 21 16 14 45 2 1 53 16 10 11 1 0 10 1 0 22 3 0 7 1 4 18 chain 17272 chr3 198022430 + 3257302 3257596 THE1B 368 + 0 303 134857 107 9 10 60 37 37 14 7 15 60 chain 3537 chr3 198022430 + 3269949 3270117 MER113 458 - 61 241 214763 20 27 27 25 1 0 4 71 84 20 chain 25369 chr3 198022430 + 3275407 3275810 MLT2A1 477 + 0 477 102835 58 0 1 79 0 1 30 1 5 36 0 1 37 0 1 41 20 94 13 29 25 14 3 0 22 1 0 19 chain 54787 chr3 198022430 + 3295017 3295685 THE1B-int 1605 - 913 1605 55850 173 1 0 63 1 26 430 chain 74465 chr3 198022430 + 3333021 3334104 MER11A 1151 + 0 1151 46290 55 0 99 74 1 0 60 9 6 33 0 2 105 9 10 94 0 1 144 5 7 120 0 26 26 44 1 19 19 1 37 0 1 60 6 7 163 chain 117418 chr3 198022430 + 3359397 3360918 THE1B-int 1605 - 9 1560 31988 63 0 1 32 0 1 92 5 6 73 0 1 45 0 1 588 10 12 141 5 1 4 0 1 78 4 29 317 0 1 64 chain 11777 chr3 198022430 + 3380899 3381043 MER44A 345 - 83 228 153146 7 0 2 122 1 0 14 chain 43623 chr3 198022430 + 3388824 3389350 MLT2A2 560 + 0 529 64659 13 0 1 189 0 1 285 0 1 39 chain 12913 chr3 198022430 + 3411607 3411948 L1PB1 5432 - 18 329 148580 10 1 0 12 1 0 22 1 0 24 59 44 6 1 0 13 9 8 34 5 4 16 2 1 12 4 5 35 2 0 9 5 1 14 1 0 6 1 0 24 1 0 11 chain 17006 chr3 198022430 + 3422613 3422869 AluSg4 309 + 36 292 135576 93 11 8 67 8 9 61 4 6 12 chain 39221 chr3 198022430 + 3448554 3449048 L1PBa 3878 + 1626 2133 70428 147 0 13 347 chain 496519 chr3 198022430 + 3449059 3455161 L1PA7 6471 + 5 6455 7038 93 19 94 49 0 8 137 17 18 32 0 16 90 3 4 70 1 0 594 0 4 634 1 3 110 0 2 59 0 1 35 2 233 109 5 6 103 0 1 129 0 2 245 3 0 207 3 7 102 3 1 801 4 0 132 0 1 537 0 2 282 0 5 217 0 1 408 4 5 27 1 0 834 chain 43963 chr3 198022430 + 3455179 3455749 L1PB1 5432 + 1910 2487 64246 208 0 2 159 1 6 202 chain 25720 chr3 198022430 + 3495854 3496259 MSTA 426 - 0 426 101214 75 0 11 14 1 0 9 4 7 63 10 9 82 7 12 12 1 0 18 10 15 99 chain 237640 chr3 198022430 + 3521796 3524427 L1PA3long 6157 + 3523 6156 16899 891 0 1 713 0 1 1027 chain 16836 chr3 198022430 + 3548653 3548972 THE1C 375 + 0 336 136027 44 4 5 64 1 2 14 14 15 29 55 69 94 chain 30823 chr3 198022430 + 3577654 3578120 LTR46 455 - 7 455 82827 35 4 0 17 1 0 8 19 26 158 18 16 51 18 0 137 chain 7537 chr3 198022430 + 3581585 3581671 L1PA3long 6157 - 0 86 173940 86 chain 26674 chr3 198022430 + 3630490 3630798 AluYk4 311 + 0 301 97412 291 7 0 10 chain 48931 chr3 198022430 + 3632827 3633550 L1PA13 3608 + 2782 3497 59789 20 7 8 179 0 1 142 1 0 28 1 0 75 1 2 27 13 11 61 1 0 55 2 0 5 2 0 38 6 3 4 0 1 6 2 0 13 6 5 22 0 3 6 chain 4177 chr3 198022430 + 3659447 3659504 MER74B 573 + 461 517 204886 6 1 0 50 chain 37838 chr3 198022430 + 3688214 3688672 LTR2 463 + 0 463 72353 129 8 11 214 0 1 98 0 1 9 chain 24448 chr3 198022430 + 3701195 3701488 AluY 311 + 10 303 107816 122 0 1 127 2 1 42 chain 27718 chr3 198022430 + 3710730 3711027 AluYb9 318 - 3 300 93981 297 chain 133200 chr3 198022430 + 3713016 3714479 L1PA2 6032 - 0 1463 27348 1463 chain 157335 chr3 198022430 + 3714479 3716226 L1PA2 6032 + 2835 4579 23687 1000 0 2 205 13 8 529 chain 44270 chr3 198022430 + 3719531 3720025 L1PA4 6152 - 0 494 63857 494 chain 25694 chr3 198022430 + 3730300 3730654 THE1A 353 + 0 353 101307 15 2 0 32 0 1 48 1 0 11 17 18 228 chain 43587 chr3 198022430 + 3747581 3748123 MER41A 554 - 11 554 64701 449 0 1 93 chain 4268 chr3 198022430 + 3756431 3756482 MLT1J 494 - 350 401 203645 51 chain 544921 chr3 198022430 + 3761070 3767066 L1PA2 6032 + 2 6032 2083 695 0 7 416 1 0 682 0 1 810 0 1 99 0 4 2201 0 12 1032 0 10 60 chain 33319 chr3 198022430 + 3793705 3794130 MER57A1 433 - 0 423 78706 151 7 4 84 0 1 183 chain 3635 chr3 198022430 + 3823322 3823362 MADE1 96 + 56 96 213047 40 chain 17790 chr3 198022430 + 3824451 3824695 MLT2A2 560 - 319 553 133447 14 14 3 23 0 1 193 chain 25259 chr3 198022430 + 3829670 3829987 AluY 311 + 0 302 103420 126 6 0 164 9 0 12 chain 20382 chr3 198022430 + 3835033 3835385 THE1B 368 + 10 368 125953 101 4 6 60 63 68 61 7 6 56 chain 25256 chr3 198022430 + 3869871 3870243 MLT2A1 477 - 83 477 103446 9 4 0 13 4 15 48 0 1 126 19 22 17 0 1 24 0 6 93 0 4 15 chain 449646 chr3 198022430 + 3870243 3876176 HERVL-int 5654 - 0 5654 8775 24 0 4 23 6 7 39 0 5 24 6 6 92 0 8 53 0 5 24 1 0 8 13 1 101 26 5 301 0 5 156 3 9 109 0 1 341 0 11 344 0 4 563 0 4 473 0 3 195 21 22 17 329 0 201 0 9 175 5 6 81 0 7 99 0 9 173 0 2 164 5 9 612 1 2 153 0 1 79 10 15 85 3 1 438 11 1 305 1 0 40 chain 29506 chr3 198022430 + 3876307 3876685 MLT2A1 477 - 94 477 86616 210 6 10 20 0 1 142 chain 7322 chr3 198022430 + 3898556 3898692 MLT1B 390 - 214 349 175291 69 33 33 29 1 0 4 chain 25828 chr3 198022430 + 3905999 3906375 THE1C 375 - 0 374 100757 26 1 0 151 11 5 14 0 3 45 21 23 107 chain 291967 chr3 198022430 + 3907116 3910573 L1PA5 6144 + 2689 6137 13906 513 2 1 242 0 1 223 4 1 373 3 8 286 0 4 919 6 7 610 11 10 132 15 0 118 chain 520870 chr3 198022430 + 3927295 3933750 L1PA7 6471 - 5 6471 5073 14 1 2 128 0 7 7 7 0 495 0 2 187 0 3 136 10 5 275 0 1 383 0 2 183 10 0 64 11 12 387 0 2 340 1 0 328 3 0 258 1 4 66 0 6 55 0 4 476 0 2 283 0 1 318 0 1 123 4 5 26 0 2 112 0 2 119 23 1 260 0 1 719 1 2 253 0 1 82 72 87 234 chain 195107 chr3 198022430 + 3936643 3938826 L1PA3long 6157 - 0 2205 19573 1344 0 26 438 0 1 22 1 0 30 0 1 117 13 8 218 chain 177965 chr3 198022430 + 3938826 3940792 L1PA3long 6157 + 1969 3937 21152 868 0 2 1098 chain 5043 chr3 198022430 + 3940908 3941000 MER53 195 - 95 195 194701 24 2 0 39 0 7 6 8 11 13 chain 21841 chr3 198022430 + 3948118 3948462 THE1A 353 + 0 353 120852 80 4 5 24 2 1 9 21 22 33 0 1 17 0 2 84 1 0 38 6 12 25 chain 504 chr3 198022430 + 3950272 3950457 MLT2A1 477 + 2 194 132760 42 5 7 87 0 1 23 7 11 21 chain 53820 chr3 198022430 + 3950465 3951153 L1PA4 6152 - 5457 6144 56381 119 1 0 408 12 26 10 14 0 124 chain 480629 chr3 198022430 + 3951153 3956626 L1PA4 6152 + 683 6151 7709 151 17 0 308 1 7 2035 0 1 322 0 1 168 4 1 263 0 1 436 3 1 286 0 1 636 0 1 500 0 2 121 2 0 203 0 6 17 chain 616 chr3 198022430 + 3956663 3956889 MLT2A1 477 + 212 477 132760 173 3 43 30 1 0 19 chain 506593 chr3 198022430 + 3976909 3983697 L1PA6 6164 - 10 6160 6427 196 0 3 225 0 1 413 0 3 397 0 1 250 658 0 446 0 1 937 0 2 89 0 1 666 0 1 16 1 2 170 8 0 57 0 2 6 2 0 781 0 1 41 2 1 163 0 4 29 1 2 85 0 1 60 8 11 283 0 1 105 5 6 128 1 0 47 0 2 279 0 2 233 chain 56866 chr3 198022430 + 3978400 3979046 L1PA5 6144 - 0 647 54623 133 1 0 56 0 3 66 1 0 389 chain 194239 chr3 198022430 + 3984884 3987956 L1MA1 4479 - 371 3132 19652 30 1 0 126 3 0 6 1 0 120 2 1 70 1 0 16 2 0 25 1 0 85 0 10 66 0 11 23 2 0 36 6 7 87 3 0 64 5 6 47 9 7 14 1 0 93 2 0 21 1 0 43 318 0 109 2 0 27 4 2 18 0 3 65 1 0 66 1 0 33 5 3 77 25 24 72 3 8 6 2 0 104 0 8 63 6 0 196 0 3 32 0 1 51 1 0 4 0 1 29 11 9 124 0 2 88 0 1 180 0 1 337 chain 10725 chr3 198022430 + 3991340 3991646 L1MC1 2226 + 1742 2047 157300 67 111 115 31 28 25 13 2 0 54 chain 563655 chr3 198022430 + 4004760 4010794 L1HS 6032 + 2 6032 247 556 1 0 4386 3 0 1088 chain 24690 chr3 198022430 + 4012911 4013207 L1PA3long 6157 + 5867 6157 106498 283 6 0 7 chain 63014 chr3 198022430 + 4015980 4016664 L1PA3long 6157 - 0 684 51438 684 chain 182832 chr3 198022430 + 4036033 4038199 L1PA7 6471 - 4 2184 20699 8 2 0 145 0 1 211 2 1 484 0 3 66 5 12 344 0 1 189 0 1 52 2 1 309 0 1 156 0 4 191 chain 114362 chr3 198022430 + 4038199 4039587 L1PA7 6471 + 2864 4282 32939 258 3 0 360 13 4 353 1 3 299 0 34 37 0 6 64 chain 27929 chr3 198022430 + 4040671 4040984 AluYb9 318 + 0 307 93239 283 11 5 19 chain 37294 chr3 198022430 + 4058752 4059165 L1PA5 6144 - 12 425 73086 413 chain 55098 chr3 198022430 + 4059167 4059803 L1PA5 6144 + 5078 5727 55644 78 7 4 137 0 4 326 0 12 88 chain 101067 chr3 198022430 + 4066981 4068067 L1HS 6032 - 0 1086 36411 1086 chain 140562 chr3 198022430 + 4068067 4069558 L1HS 6032 + 3457 4948 26063 1491 chain 4009 chr3 198022430 + 4069562 4069642 MER33 330 + 211 290 207245 35 18 17 27 chain 41860 chr3 198022430 + 4080905 4081347 L1HS 6032 - 0 442 66818 442 chain 59641 chr3 198022430 + 4111320 4112067 MER4E 760 + 0 760 53028 23 0 1 79 0 5 56 0 1 184 0 3 9 0 2 324 0 1 72 chain 494554 chr3 198022430 + 4112862 4119494 L1PA6 6164 + 0 6159 7139 177 18 20 160 23 0 3 5 0 26 0 1 62 19 0 115 20 0 5 56 0 38 0 2 83 0 1 48 21 0 46 0 17 92 38 1 549 1 0 884 2 0 949 0 2 199 10 5 218 1 0 102 0 3 114 14 15 77 1 3 356 0 2 270 2 0 221 0 1 66 3 0 49 1 0 389 311 0 788 chain 204517 chr3 198022430 + 4149792 4152075 L1P1 4361 - 1400 3686 18884 189 0 3 461 1 0 1406 0 1 226 chain 54371 chr3 198022430 + 4152075 4152687 L1PA5 6144 + 5532 6143 56113 500 1 0 111 chain 32411 chr3 198022430 + 4168974 4169423 MLT2A1 477 + 0 477 80188 168 5 2 9 0 1 24 0 1 180 15 0 8 3 47 37 chain 455333 chr3 198022430 + 4169423 4175098 HERVL-int 5654 + 0 5654 8567 442 6 8 113 4 3 4 0 1 73 0 1 8 1 0 217 25 30 59 37 2 733 2 1 219 0 1 22 0 1 5 2 1 339 0 1 55 2 1 705 0 1 126 7 9 625 9 4 155 5 7 403 6 0 522 0 6 427 0 1 81 0 1 137 0 5 99 chain 32103 chr3 198022430 + 4175098 4175544 MLT2A1 477 + 0 477 80688 166 7 4 5 2 0 5 0 3 21 0 1 180 4 0 12 5 41 39 chain 314941 chr3 198022430 + 4175687 4179311 L1PA5 6144 + 2515 6139 12810 587 5 2 583 2 1 416 1 0 696 1 6 1333 chain 39022 chr3 198022430 + 4188664 4189094 L1PA4 6152 + 5301 5734 70710 51 0 5 372 2 0 5 chain 31874 chr3 198022430 + 4200345 4200851 L1M1 2793 - 98 948 81057 10 1 0 12 1 0 25 25 24 262 0 341 37 9 14 24 17 18 83 chain 240417 chr3 198022430 + 4205702 4208742 HERV9-int 5642 - 2658 5642 16748 666 1 2 572 17 48 562 1 2 29 12 4 19 80 0 167 0 2 39 0 1 25 2 0 35 0 1 94 6 0 111 7 9 124 0 1 471 chain 39547 chr3 198022430 + 4208762 4209372 LTR12F 595 - 0 595 69961 245 0 1 65 24 0 59 14 56 21 12 10 9 25 0 25 6 1 93 2 0 10 chain 51318 chr3 198022430 + 4214295 4214969 L1PA7 6471 - 765 1424 58091 86 15 0 117 0 1 14 0 6 149 1 2 242 10 2 40 chain 60300 chr3 198022430 + 4214970 4215692 L1PA7 6471 + 5716 6440 52681 207 0 1 386 1 2 128 chain 513804 chr3 198022430 + 4216250 4222368 L1PA6 6164 + 0 6146 5801 84 0 1 152 0 2 278 0 2 48 1 0 231 1 19 255 10 12 40 0 1 300 3 4 897 1 2 1548 0 1 688 1 7 469 7 0 875 0 1 229 chain 29861 chr3 198022430 + 4246698 4247118 LTR7B 505 + 0 495 85236 90 0 3 15 0 10 42 0 1 22 6 68 5 1 0 22 0 2 82 2 0 26 0 1 52 14 13 41 chain 4552 chr3 198022430 + 4252897 4252951 MLT2A2 560 + 506 560 200199 54 chain 466487 chr3 198022430 + 4253485 4259194 L1PA7 6471 + 666 6456 8174 55 27 32 97 0 1 400 0 19 127 0 3 1120 0 2 117 0 2 341 2 3 256 0 2 64 7 8 206 0 1 49 0 10 256 5 4 251 5 6 178 5 7 204 0 1 180 0 4 871 0 24 47 0 3 839 chain 219414 chr3 198022430 + 4279480 4282079 L1PA7 6471 - 15 2635 17924 319 0 1 146 0 3 281 0 3 82 1 0 671 0 1 280 0 4 345 0 3 308 1 0 111 1 9 53 chain 331495 chr3 198022430 + 4283760 4288076 L1P2 5180 - 824 5178 12146 351 0 3 301 3 1 10 0 2 95 7 6 171 0 12 318 0 1 245 2 1 193 14 16 96 7 10 202 3 0 90 21 25 280 0 1 37 0 1 251 0 9 77 0 1 17 0 11 62 12 5 17 0 5 288 0 3 154 0 1 185 0 15 224 1 0 48 1 0 68 17 0 148 57 56 43 10 9 41 1 0 148 chain 552853 chr3 198022430 + 4294932 4300952 L1PA2 6032 + 0 6024 1085 558 1 0 563 1 0 2364 0 6 2533 chain 180377 chr3 198022430 + 4307268 4309252 L1PA3long 6157 - 854 2844 20955 939 0 4 7 0 2 1038 chain 73726 chr3 198022430 + 4309252 4310119 L1PA3long 6157 + 5329 6149 46525 727 47 0 93 chain 10965 chr3 198022430 + 4310866 4311008 L1PA4 6152 - 9 162 156342 104 6 17 32 chain 103639 chr3 198022430 + 4357756 4359006 HSMAR1 1287 + 23 1287 35816 53 0 4 33 1 5 41 1 6 1049 6 7 66 chain 119476 chr3 198022430 + 4370382 4371985 THE1B-int 1605 - 12 1605 31230 101 0 1 332 13 17 621 0 2 10 14 11 47 34 18 45 12 10 64 3 5 199 5 8 58 1 0 44 chain 438680 chr3 198022430 + 4385962 4391628 L1PA8A 6298 + 905 6290 9092 42 0 3 143 0 4 41 1 3 69 0 4 15 0 1 26 4 0 81 0 3 288 1 0 228 0 1 725 0 8 751 2 0 19 1 0 12 7 6 31 5 6 60 1 0 403 0 1 192 0 1 293 0 1 129 1 0 146 0 6 576 323 0 266 2 1 49 0 5 64 0 13 669 chain 337872 chr3 198022430 + 4405230 4409081 L1P1 4361 - 41 3890 11959 15 1 0 155 1 0 1277 1 10 1317 0 1 487 1 0 334 1 0 23 7 0 124 4 3 103 chain 13040 chr3 198022430 + 4422888 4423157 L1PB1 5432 + 5172 5420 148078 48 2 1 15 1 0 44 1 0 16 1 0 6 64 50 20 1 0 19 2 1 12 1 0 16 chain 46829 chr3 198022430 + 4424196 4424746 L1PA7 6471 + 5902 6452 61354 550 chain 52025 chr3 198022430 + 4442506 4443108 L1PA6 6164 - 5 607 57608 602 chain 13777 chr3 198022430 + 4464513 4464758 L1PB1 5432 - 16 256 145344 12 1 0 12 2 1 21 1 0 24 2 0 15 1 0 4 2 0 15 1 9 7 2 0 14 7 6 40 1 0 15 3 2 43 chain 16333 chr3 198022430 + 4464765 4464961 L1PB1 5432 + 4902 5103 137389 79 0 5 117 chain 8856 chr3 198022430 + 4522905 4523013 L1MB8 1703 - 115 223 166343 108 chain 8903 chr3 198022430 + 4565313 4565429 L1MA8 2339 - 253 368 166123 76 2 1 38 chain 25276 chr3 198022430 + 4598789 4599155 THE1B 368 - 0 368 103339 125 17 15 14 1 5 9 1 0 6 3 5 20 1 0 169 chain 11274 chr3 198022430 + 4603675 4603890 MER30 238 - 0 238 155145 28 13 11 41 41 48 75 0 18 17 chain 2920 chr3 198022430 + 4606551 4606582 U7 62 - 30 61 226672 31 chain 38008 chr3 198022430 + 4627455 4627916 L1PA7 6471 - 1 464 72122 332 0 2 129 chain 3744 chr3 198022430 + 4821567 4821608 MADE1 96 - 54 95 211262 41 chain 7134 chr3 198022430 + 4894240 4894325 LTR39 781 + 48 133 176519 85 chain 55813 chr3 198022430 + 4919363 4919976 L1PA3long 6157 + 5544 6157 55239 613 chain 5797 chr3 198022430 + 4920293 4920377 U13 108 - 14 98 187167 27 1 0 23 3 4 30 chain 3125 chr3 198022430 + 4952506 4952544 L1P1 4361 - 51 88 222436 5 1 0 32 chain 562732 chr3 198022430 + 4958219 4964252 L1HS 6032 + 0 6032 282 558 1 0 5474 chain 16353 chr3 198022430 + 4993352 4993549 MER107 203 - 0 202 137330 24 0 3 25 0 1 8 0 1 140 chain 15980 chr3 198022430 + 4996713 4997018 L1PB1 5432 - 5 298 138406 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 11 14 11 16 16 6 6 3 0 16 1 0 44 1 0 17 1 0 52 6 20 13 chain 512549 chr3 198022430 + 5007450 5013587 L1PA4 6152 + 15 6143 5916 105 32 46 793 25 0 218 10 1 237 5 6 667 0 10 157 0 1 64 2 1 43 4 0 922 1 0 329 0 1 307 1 0 1411 0 1 602 0 3 98 0 1 104 chain 7195 chr3 198022430 + 5057340 5057439 MER30 238 - 7 107 176105 38 1 4 51 2 0 7 chain 24792 chr3 198022430 + 5089414 5089739 THE1C 375 + 9 336 105934 176 8 10 141 chain 80549 chr3 198022430 + 5123311 5124245 LTR5_Hs 974 - 0 974 43370 104 1 0 91 0 19 178 0 16 26 1 2 28 0 1 490 1 5 14 chain 8279 chr3 198022430 + 5127864 5127964 HY3 101 - 1 101 169515 100 chain 13569 chr3 198022430 + 5140646 5140828 L1PA16 3655 - 72 253 146096 5 3 0 40 0 2 134 chain 119276 chr3 198022430 + 5154926 5156388 SVA_D 2077 - 9 2071 31303 127 0 20 361 2 1 88 0 664 223 79 0 359 1 0 168 0 3 5 13 11 10 1 0 4 1 0 6 1 0 8 1 0 4 chain 20052 chr3 198022430 + 5169347 5169586 AluY 311 + 71 311 126963 58 1 2 180 chain 36236 chr3 198022430 + 5182507 5182968 LTR71A 459 - 0 459 74577 12 9 7 101 0 1 4 1 0 334 chain 32559 chr3 198022430 + 5188707 5189128 L1PA5 6144 - 0 436 79932 11 3 1 108 0 1 20 12 14 110 1 0 99 0 15 57 chain 30706 chr3 198022430 + 5191088 5191505 LTR71A 459 - 0 459 83027 14 2 0 37 6 47 114 7 10 237 chain 35200 chr3 198022430 + 5239564 5240471 MER4A 717 - 122 695 75920 102 418 99 119 0 2 16 4 5 59 1 0 4 1 2 64 18 0 101 chain 19220 chr3 198022430 + 5267857 5268116 MER39B 650 - 382 650 129475 156 13 11 54 0 12 5 1 0 30 chain 27688 chr3 198022430 + 5275621 5275923 AluYb8 318 + 0 302 94087 302 chain 92675 chr3 198022430 + 5284057 5285209 SVA_B 1603 - 0 1603 38760 428 0 1 97 3 284 7 0 37 83 1 77 15 1 78 31 22 8 261 1 0 149 6 5 35 5 0 7 chain 125775 chr3 198022430 + 5285495 5286962 L1PA7 6471 + 4992 6461 29163 622 1 0 84 0 2 183 0 1 577 chain 20854 chr3 198022430 + 5293264 5293543 AluSz6 309 - 19 298 124446 134 5 8 5 3 0 132 chain 29344 chr3 198022430 + 5315288 5315738 MLT2A2 560 + 1 560 87328 54 1 0 43 2 0 85 45 44 75 3 112 114 0 4 28 chain 137873 chr3 198022430 + 5324919 5326448 SVA_D 2077 - 11 2065 26503 628 5 404 32 0 86 20 0 40 844 chain 2888 chr3 198022430 + 5361649 5361689 FAM 185 + 102 143 227224 30 1 2 9 chain 3420 chr3 198022430 + 5361919 5361956 MLT1I 406 - 286 323 216763 37 chain 59659 chr3 198022430 + 5369217 5369898 L1PA5 6144 - 0 679 53013 11 3 1 667 chain 158228 chr3 198022430 + 5369900 5371686 L1PA5 6144 + 3688 5477 23560 58 0 1 227 0 2 269 1 0 4 1 2 1226 chain 22725 chr3 198022430 + 5372575 5373264 THE1D 372 - 0 372 116959 35 16 1 90 0 1 4 4 3 18 337 34 28 0 1 52 4 5 5 1 0 95 chain 7316 chr3 198022430 + 5374128 5374240 L1MB3 1562 + 1440 1552 175320 26 4 5 52 1 0 29 chain 20910 chr3 198022430 + 5386940 5387226 AluSz6 309 + 10 295 124245 116 1 0 7 12 11 137 0 1 13 chain 4058 chr3 198022430 + 5397937 5397987 L1PB4 2604 + 2502 2552 206511 50 chain 30304 chr3 198022430 + 5409156 5409586 MLT2A1 477 - 8 477 83907 31 0 1 9 7 45 182 0 3 17 1 2 10 5 2 9 13 12 146 chain 413253 chr3 198022430 + 5413182 5418230 L1PA6 6164 - 17 5215 9718 831 0 4 813 0 2 37 1 159 204 0 1 98 0 21 281 3 1 18 25 7 444 0 2 33 5 2 682 0 1 93 2 5 77 15 0 119 0 1 351 0 4 62 0 2 744 11 0 99 chain 70458 chr3 198022430 + 5418230 5419165 L1PA6 6164 + 10 951 48034 385 21 20 34 8 0 120 1 0 24 1 0 209 1 18 131 chain 475190 chr3 198022430 + 5420326 5426383 L1PA7 6471 - 2 6471 7878 10 2 0 182 0 1 145 1 0 50 14 15 66 6 3 6 0 4 129 12 10 36 0 3 98 9 11 85 0 1 8 0 4 130 14 15 23 0 6 613 2 0 5 0 2 33 0 3 81 0 1 17 1 23 24 0 4 235 1 0 287 0 1 289 1 0 285 0 3 19 4 0 284 0 4 46 0 294 81 0 2 45 0 3 98 6 5 20 4 5 86 0 1 10 0 1 347 0 5 106 8 4 15 0 1 16 3 5 59 0 1 154 1 3 408 1 3 152 0 4 20 1 5 138 6 7 211 0 8 441 0 2 127 0 36 240 chain 6336 chr3 198022430 + 5431169 5431297 L1MC3 1789 - 409 525 182498 46 9 0 7 10 0 8 9 16 39 chain 123608 chr3 198022430 + 5436816 5438191 L1PA3long 6157 - 7 1377 29838 326 1 0 123 1 0 515 3 0 406 chain 516079 chr3 198022430 + 5453909 5460593 L1PA7 6471 + 0 6470 5568 316 0 1 85 5 6 377 0 1 64 0 1 359 0 4 803 0 1 131 299 0 11 0 4 165 9 1 167 5 4 91 0 5 40 1 2 250 0 4 167 1 4 86 0 62 41 0 1 338 0 1 7 7 6 103 0 3 32 5 4 252 1 0 8 0 2 195 7 8 359 1 0 4 1 2 226 0 2 316 2 1 81 1 0 68 0 1 348 0 3 446 0 1 65 0 1 299 0 2 23 7 0 9 chain 41733 chr3 198022430 + 5495048 5495640 PRIMA4_LTR 623 - 0 623 66985 68 8 10 101 1 0 13 0 1 16 0 4 26 13 1 36 5 44 47 1 0 2 0 5 61 4 0 96 5 3 89 chain 214973 chr3 198022430 + 5553753 5556922 L1PA8A 6298 + 3505 6291 18166 127 88 0 24 1 0 133 5 6 83 0 1 247 0 1 43 0 1 8 0 5 170 0 2 79 320 0 136 0 8 65 0 3 15 0 1 69 0 3 257 5 5 235 0 1 256 7 6 82 7 10 561 4 0 28 1 0 7 0 1 5 25 26 76 chain 158582 chr3 198022430 + 5557445 5559280 L1PA5 6144 - 1 1849 23521 140 0 2 606 0 3 95 1 4 605 1 2 344 1 5 42 chain 291007 chr3 198022430 + 5565797 5569175 L1PA4 6152 - 4 3435 13961 40 0 1 294 0 1 22 0 1 639 0 53 233 3 0 1203 96 96 848 chain 260486 chr3 198022430 + 5569499 5572981 L1PA7 6471 - 5 6331 15669 7 3 0 126 4 0 4 4 0 7 0 8 177 1 3 78 0 1 245 0 1 119 6 5 16 11 30 22 4 7 104 0 3 5 8 1 162 0 1 348 3 0 5 11 14 10 0 1 4 3 1 100 0 1 174 1 9 102 0 2 109 8 2816 215 5 8 40 0 1 645 29 32 82 1 0 207 1 2 121 0 1 6 5 4 134 chain 23885 chr3 198022430 + 5619225 5619495 AluYf4 310 - 27 310 110996 226 1 14 43 chain 8452 chr3 198022430 + 5619628 5619731 MLT1A0 366 + 261 364 168557 103 chain 183934 chr3 198022430 + 5627388 5629479 L1PA5 6144 + 4018 6126 20594 324 0 8 307 5 8 631 0 6 824 chain 520377 chr3 198022430 + 5632494 5638634 L1PA5 6144 - 0 6141 5115 843 0 4 952 0 4 25 0 1 1684 0 10 805 1 0 989 32 15 124 0 1 112 3 2 570 chain 116899 chr3 198022430 + 5675163 5676820 L1PBa1 4058 - 2342 4003 32160 54 1 0 10 1 0 25 3 1 5 0 2 23 1 0 21 17 6 7 0 11 46 0 1 47 2 1 354 31 22 192 13 14 214 18 14 16 41 40 24 1 0 48 0 1 85 3 1 318 0 22 36 chain 3289 chr3 198022430 + 5685327 5685363 LTR39 781 - 411 447 219191 36 chain 48300 chr3 198022430 + 5687822 5688474 PABL_B 668 + 0 668 60242 281 2 1 149 0 3 14 0 2 14 3 14 12 10 11 167 chain 52513 chr3 198022430 + 5700349 5701086 LTR12D 1347 - 8 759 57295 210 4 0 5 0 3 39 2 1 29 4 3 6 0 2 19 27 0 178 12 13 11 2 3 82 0 41 20 2 1 85 chain 2821 chr3 198022430 + 5703167 5703202 MER5A 189 + 36 72 228440 15 0 1 20 chain 37606 chr3 198022430 + 5721970 5722482 L1PA8 5853 + 5344 5849 72678 89 1 0 5 5 6 120 1 0 44 2 0 70 2 1 8 2 1 52 2 1 19 1 0 89 chain 88397 chr3 198022430 + 5735433 5737982 HERVIP10F-int 4088 - 771 2425 40222 4 1 0 11 20 12 7 3 0 6 1 0 14 118 99 10 3 0 7 1 0 4 13 11 4 1 0 24 66 41 57 1 0 4 22 20 317 0 5 111 0 1 76 1007 102 46 2 1 11 1 0 63 13 12 87 1 0 65 1 0 20 1 0 101 14 17 199 0 74 11 chain 50566 chr3 198022430 + 5736339 5736963 HERVIP10FH-int 2884 - 2107 2736 57708 55 0 1 317 4 5 156 0 3 27 9 8 16 0 1 40 chain 38623 chr3 198022430 + 5742543 5743067 LTR10F 562 - 10 562 71262 207 1 2 75 7 27 10 27 34 197 chain 172405 chr3 198022430 + 5743617 5745872 Harlequin-int 5206 - 2736 4970 21771 5 0 4 41 2 1 101 29 11 47 1 0 208 0 2 114 3 1 587 1 2 56 2 0 341 6 5 239 6 7 20 1 0 193 1 0 188 4 0 10 7 0 8 0 9 34 chain 194484 chr3 198022430 + 5745919 5748146 L1PA5 6144 - 12 2241 19630 156 0 1 493 1 0 182 0 1 5 1 0 816 6 8 567 chain 32492 chr3 198022430 + 5750189 5750665 LTR10F 562 - 0 562 80043 177 5 4 30 0 1 6 5 4 75 33 120 145 chain 55643 chr3 198022430 + 5752187 5752944 MER4E 760 - 0 760 55342 193 0 1 122 1 0 80 4 6 85 6 5 92 22 25 129 1 0 22 chain 36615 chr3 198022430 + 5761448 5761863 L1PA7 6471 + 6050 6465 74075 415 chain 16862 chr3 198022430 + 5797388 5797634 L1PA6 6164 + 5924 6162 135933 68 33 28 131 3 0 11 chain 13395 chr3 198022430 + 5807358 5807546 L1PA16 3655 - 369 552 146741 57 0 1 22 3 2 68 5 0 33 chain 130338 chr3 198022430 + 5816655 5818172 L1PA6 6164 - 5 1534 28011 981 0 14 322 2 0 212 chain 174010 chr3 198022430 + 5843281 5845272 L1PA4 6152 - 9 2010 21590 46 0 1 49 0 3 5 0 1 34 0 1 657 0 1 51 1 0 133 0 1 254 0 3 761 chain 31135 chr3 198022430 + 5845272 5845625 L1PA4 6152 + 3829 4182 82117 353 chain 5356 chr3 198022430 + 5916197 5916278 Tigger1 2417 + 2280 2356 191479 48 13 8 20 chain 16333 chr3 198022430 + 5946193 5946571 L1PB1 5432 + 5073 5420 137388 30 7 6 5 1 0 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 50 3 2 18 1 0 44 1 0 15 1 0 6 64 50 18 1 0 19 4 3 12 5 4 12 chain 171024 chr3 198022430 + 5953700 5955616 L1PA3long 6157 - 0 1896 21940 338 0 1 763 0 1 267 22 0 526 chain 7295 chr3 198022430 + 5970099 5970188 Tigger3c 601 + 344 433 175480 89 chain 500431 chr3 198022430 + 5976074 5986395 L1PA6 6164 - 3 6163 6810 8 6 0 491 0 1 53 0 1 163 0 1 420 0 1 138 3 0 25 4165 0 146 1 0 951 0 1 416 0 1 137 10 12 182 0 1 4 2 1 467 17 21 193 0 1 435 0 1 908 1 0 6 4 5 283 4 5 271 0 1 283 2 0 126 chain 365764 chr3 198022430 + 5977387 5981522 L1PA4 6152 + 2011 6152 11213 725 0 1 778 1 2 600 1 0 121 6 7 1059 0 4 844 chain 6261 chr3 198022430 + 5996069 5996142 L1PREC2 3366 + 2644 2717 183084 73 chain 36067 chr3 198022430 + 5998899 5999412 MLT2A2 560 + 0 560 74807 180 1 0 128 6 38 54 1 12 90 14 19 39 chain 12682 chr3 198022430 + 6007460 6007641 MER30 238 - 0 207 149520 39 3 0 68 7 36 64 chain 14643 chr3 198022430 + 6010093 6010315 MER30 238 - 4 238 142446 5 0 1 29 3 0 75 4 17 48 12 13 46 chain 31570 chr3 198022430 + 6017825 6018227 MLT2A1 477 - 78 477 81532 14 4 0 212 0 4 26 0 1 123 12 8 11 chain 36121 chr3 198022430 + 6032901 6033368 L1PA8 5853 + 5392 5852 74739 172 1 0 44 2 0 71 1 0 5 5 4 52 2 1 19 1 0 92 chain 44536 chr3 198022430 + 6037817 6038365 MLT2A2 560 - 0 559 63541 147 0 11 401 chain 3116 chr3 198022430 + 6050732 6050776 MLT2A1 477 + 434 477 222635 24 2 1 18 chain 458163 chr3 198022430 + 6050936 6057560 HERVL-int 5654 + 0 5654 8467 248 3 1 206 0 1 415 4 11 459 12 0 5 1 3 192 0 1 355 3 0 8 1 0 165 0 9 213 4 7 390 0 13 115 0 4 290 0 1 119 2 1 493 998 0 250 0 2 177 1 0 314 0 2 287 6 0 525 0 1 67 0 6 20 1 2 52 4 5 219 chain 71836 chr3 198022430 + 6063586 6064402 L1PA5 6144 - 4 820 47543 816 chain 307716 chr3 198022430 + 6074452 6078499 L1P3 4156 - 17 4123 13101 23 3 2 7 2 0 444 3 7 106 0 4 52 13 14 40 1 4 215 1 0 27 0 7 458 0 11 584 14 13 59 9 13 17 0 1 114 2 1 647 0 19 73 4 15 600 3 4 148 0 1 88 1 0 59 30 29 200 chain 53026 chr3 198022430 + 6108426 6109118 LTR30 714 + 0 704 57002 249 0 5 189 7 18 158 2 0 10 25 24 39 1 0 12 chain 26938 chr3 198022430 + 6126808 6127113 AluY 311 + 0 305 96494 26 1 0 106 0 1 172 chain 92347 chr3 198022430 + 6142832 6143851 L1PA4 6152 - 0 1019 38861 160 0 1 607 1 0 251 chain 3435 chr3 198022430 + 6150000 6150038 U3 216 + 0 38 216470 38 chain 54114 chr3 198022430 + 6168482 6169217 LTR12 884 - 0 884 56286 149 0 2 5 4 103 231 0 22 31 0 1 97 42 1 53 0 66 123 chain 3609 chr3 198022430 + 6168999 6169041 LTR12 884 - 773 815 154577 42 chain 43927 chr3 198022430 + 6170823 6171310 SVA_D 2077 - 15 502 64299 487 chain 56119 chr3 198022430 + 6188348 6188971 L1PA3long 6157 - 0 619 55058 15 3 0 133 1 0 471 chain 40215 chr3 198022430 + 6208446 6208936 MER9a1 513 - 0 513 69012 128 0 1 117 17 39 228 chain 19465 chr3 198022430 + 6212115 6212352 AluY 311 + 49 287 128765 77 0 1 160 chain 45478 chr3 198022430 + 6216989 6217506 L1PA4 6152 - 9 525 62517 93 1 0 423 chain 26080 chr3 198022430 + 6217506 6217823 L1P1 4361 + 4027 4341 99707 124 1 0 154 1 0 23 2 1 12 chain 6414 chr3 198022430 + 6233567 6233644 L1PA8 5853 - 0 77 181916 77 chain 3463 chr3 198022430 + 6284671 6284713 MER5C 305 - 167 209 215935 42 chain 45664 chr3 198022430 + 6294511 6295305 L1PB1 5432 + 4577 5281 62341 22 0 1 27 7 4 48 17 2 12 0 4 10 0 1 98 1 0 86 1 0 190 0 2 10 90 20 24 24 20 10 2 0 52 2 1 16 1 0 44 chain 547083 chr3 198022430 + 6308606 6314721 L1PA3long 6157 - 2 6153 1820 136 0 7 275 0 1 356 0 2 74 0 4 259 9 0 1797 8 12 94 0 5 348 0 5 89 0 1 533 0 6 1140 0 7 66 4 0 323 0 4 29 0 4 362 1 0 212 chain 13140 chr3 198022430 + 6314734 6315099 Tigger4 2445 + 2112 2408 147685 79 12 15 9 1 0 50 7 6 12 1 0 23 91 36 14 3 0 5 2 1 12 2 0 5 1 0 17 8 1 11 chain 25093 chr3 198022430 + 6336937 6337242 AluY 311 + 4 304 104330 128 0 1 122 1 0 39 5 0 10 chain 74425 chr3 198022430 + 6348621 6349496 MER11D 897 - 0 897 46305 120 1 0 161 0 23 593 chain 48158 chr3 198022430 + 6359479 6360009 L1PA3long 6157 - 2444 2974 60357 530 chain 221806 chr3 198022430 + 6360009 6362600 L1PA3long 6157 + 3719 6157 17764 337 167 9 1245 0 4 835 0 1 7 chain 24894 chr3 198022430 + 6372157 6372510 THE1B 368 + 0 367 105386 172 1 0 25 31 46 124 chain 35007 chr3 198022430 + 6372511 6373003 THE1B-int 1605 + 0 523 76182 12 4 6 231 7 6 31 6 8 43 0 1 94 3 28 5 0 2 56 chain 27169 chr3 198022430 + 6382127 6382414 AluYd8 298 + 0 287 95700 287 chain 547646 chr3 198022430 + 6382506 6388622 L1PA3long 6157 + 0 6157 1746 6 2 0 147 0 1 101 0 1 439 0 7 1994 0 1 287 0 4 263 1 5 1162 0 1 333 0 1 557 0 4 781 0 19 43 chain 18497 chr3 198022430 + 6404483 6404716 L1PA8 5853 - 1645 1879 131505 76 3 4 154 chain 116052 chr3 198022430 + 6404716 6406404 L1PA8 5853 + 4225 5848 32436 22 7 10 113 8 7 131 0 5 9 6 1 53 0 1 305 60 1 127 3 1 553 2 1 44 2 0 61 46 43 13 0 1 9 8 7 17 2 1 87 chain 49794 chr3 198022430 + 6414768 6415337 L1PA5 6144 + 5563 6132 59163 569 chain 32446 chr3 198022430 + 6439273 6439727 LTR7 482 + 0 482 80117 169 0 11 44 5 37 120 17 1 29 21 22 49 chain 296572 chr3 198022430 + 6439729 6443404 HERVH-int 3825 + 0 3825 13612 380 0 2 148 1 0 11 1 0 4 0 1 24 1 0 10 1 0 11 4 0 12 49 1 15 1 0 11 22 19 53 1 0 77 0 1 355 0 1 90 15 0 232 0 2 10 1 0 309 0 1 220 0 4 111 0 1 954 9 11 39 8 218 254 6 8 225 chain 22194 chr3 198022430 + 6448647 6448963 LTR12 884 + 0 365 119379 25 1 0 52 1 67 192 24 8 21 chain 13638 chr3 198022430 + 6464906 6465090 THE1B 368 - 1 192 145827 17 3 2 57 0 8 12 1 0 4 0 1 90 chain 81030 chr3 198022430 + 6470192 6471092 L1PA3long 6157 - 0 900 43179 900 chain 37071 chr3 198022430 + 6501484 6502024 MER50 708 - 23 680 73429 204 1 0 90 42 166 121 0 1 43 15 8 24 chain 27321 chr3 198022430 + 6524167 6524550 MLT2A1 477 - 94 477 95207 47 5 6 6 1 0 142 0 1 12 5 2 117 6 8 42 chain 547424 chr3 198022430 + 6526598 6532616 L1PA2 6032 - 2 6029 1778 1062 0 3 2699 0 4 32 0 1 1864 0 1 361 chain 198698 chr3 198022430 + 6538934 6541175 L1PA4 6152 + 3905 6149 19304 787 0 1 456 0 5 778 1 0 149 0 1 54 3 0 13 chain 34038 chr3 198022430 + 6560450 6560875 LTR10B 488 + 12 431 77566 97 7 1 321 chain 3852 chr3 198022430 + 6569066 6569139 MER58C 217 - 32 94 209629 33 16 5 24 chain 7282 chr3 198022430 + 6573326 6573458 MER83 447 - 124 256 175571 11 1 0 6 2 0 6 0 2 41 20 21 45 chain 142750 chr3 198022430 + 6576598 6578327 L1PA7 6471 - 37 1783 25680 118 12 9 170 0 1 219 0 1 294 6 5 164 0 9 149 0 9 301 1 2 295 chain 372635 chr3 198022430 + 6578327 6583621 L1P2 5180 - 192 5177 11008 992 1 0 4 24 5 527 10 13 264 1 0 11 0 1 381 14 18 251 3 9 1062 1 0 10 11 7 384 1 0 4 4 5 97 0 1 6 0 3 131 0 15 46 21 0 175 53 0 4 23 0 27 38 25 4 0 1 58 19 0 79 252 56 38 25 34 39 8 8 43 22 21 126 chain 125329 chr3 198022430 + 6588294 6589651 L1PA2 6032 - 0 1358 29292 157 0 1 1200 chain 39492 chr3 198022430 + 6589651 6590079 L1PA2 6032 + 4239 4667 69516 428 chain 10654 chr3 198022430 + 6601866 6602281 MLT2B4 540 - 42 536 157590 30 59 53 14 120 204 45 62 63 85 chain 395940 chr3 198022430 + 6630012 6634562 L1PA5 6144 + 1541 6126 10245 773 0 1 67 0 1 115 0 1 140 11 0 2257 0 1 578 0 19 96 0 1 491 0 22 22 chain 15793 chr3 198022430 + 6661852 6662144 MER39 703 - 78 372 138975 33 0 1 62 0 2 61 3 0 18 31 34 20 27 26 37 chain 25525 chr3 198022430 + 6678806 6679099 AluYk4 311 + 0 293 102118 293 chain 93821 chr3 198022430 + 6714858 6716085 HSMAR1 1287 + 12 1252 38408 624 24 37 480 1 3 21 2 0 75 chain 104991 chr3 198022430 + 6725317 6726501 L1PA4 6152 - 9 1194 35502 146 0 1 104 1 0 580 0 1 353 chain 23237 chr3 198022430 + 6746595 6747047 L1PA15 4387 + 3890 4330 114511 22 0 1 18 4 3 76 22 15 79 1 0 26 14 22 33 1 0 23 14 9 26 30 27 44 3 1 8 1 0 7 chain 20118 chr3 198022430 + 6750681 6750991 L1PB3 3668 + 2728 3030 126774 161 6 11 65 7 5 18 2 0 10 9 0 32 chain 33477 chr3 198022430 + 6760632 6761099 L1PA8 5853 - 0 459 78444 93 1 0 19 2 1 52 1 0 9 2 1 66 17 15 30 4 3 90 2 1 79 chain 4595 chr3 198022430 + 6772314 6772391 MER2 342 + 251 329 199684 37 14 15 26 chain 29251 chr3 198022430 + 6777773 6778210 MER4A1 472 - 14 471 87788 117 1 0 4 1 2 82 8 29 89 0 15 8 35 19 92 chain 532695 chr3 198022430 + 6805826 6811780 L1PA3long 6157 - 0 6089 3887 184 1 0 665 0 4 920 0 2 427 1 0 662 0 1 602 1 0 1786 0 128 411 0 1 108 4 5 98 0 1 84 chain 8617 chr3 198022430 + 6825531 6825648 L1MA3 4352 - 70 184 167645 24 2 0 79 1 0 11 chain 64812 chr3 198022430 + 6870484 6871184 L1PA2 6032 - 202 902 50653 700 chain 19588 chr3 198022430 + 6871192 6871399 L1PA2 6032 + 5818 6025 128410 207 chain 52463 chr3 198022430 + 6914154 6914768 L1PA7 6471 - 4 618 57317 9 1 0 31 0 1 111 1 0 261 0 1 200 chain 15978 chr3 198022430 + 6927978 6928183 L1PA6 6164 + 5959 6156 138416 33 8 0 164 chain 442757 chr3 198022430 + 6928919 6933831 L1PA3long 6157 - 0 4914 8968 1664 0 1 1229 0 1 2019 chain 9844 chr3 198022430 + 6958170 6958357 MLT1A0 366 - 50 248 161375 89 24 33 24 22 24 28 chain 3308 chr3 198022430 + 6984480 6984520 L1ME1 1623 - 365 405 218799 40 chain 539445 chr3 198022430 + 6986761 6992877 L1PA4 6152 - 11 6152 2905 833 0 4 849 0 8 765 1 0 505 1 0 142 0 1 1902 10 11 105 1 0 875 0 14 127 chain 3861 chr3 198022430 + 7021413 7021459 MADE1 96 + 3 49 209440 46 chain 5810 chr3 198022430 + 7056566 7057005 LTR12 884 + 313 728 187040 25 160 17 23 153 272 37 14 14 27 chain 6115 chr3 198022430 + 7061907 7062065 L1MC1 2226 + 1933 2079 184310 26 24 21 16 2 0 43 31 24 16 chain 46489 chr3 198022430 + 7100269 7100854 LTR10C 591 - 0 591 61610 79 0 2 39 1 4 42 10 11 414 chain 7648 chr3 198022430 + 7103673 7103761 HERVK-int 6823 + 5372 5460 173241 88 chain 111492 chr3 198022430 + 7105803 7107507 L1PB1 5432 - 16 1584 33813 12 1 0 12 2 1 21 1 0 24 24 22 12 22 12 4 1 0 16 1 0 43 1 0 16 5 4 50 2 0 9 164 43 10 1 2 288 3 11 183 3 0 773 chain 135783 chr3 198022430 + 7107514 7109236 L1PB1 5432 + 2112 3840 26882 92 0 3 251 0 4 29 0 1 8 7 0 46 0 4 286 1 0 6 2 0 44 0 3 64 5 6 27 1 0 103 0 1 202 0 1 75 0 1 178 1 2 111 14 13 54 1 0 5 1 0 108 chain 81048 chr3 198022430 + 7118451 7119417 L1PA7 6471 + 5493 6468 43165 109 0 4 13 1 5 537 0 1 306 chain 50421 chr3 198022430 + 7279113 7279739 LTR12 884 - 1 884 58696 155 0 103 242 10 164 219 chain 10260 chr3 198022430 + 7282510 7282669 Tigger3a 397 + 55 273 159324 20 24 83 115 chain 53235 chr3 198022430 + 7331101 7331705 L1PA5 6144 + 5540 6144 56869 604 chain 19415 chr3 198022430 + 7333480 7333842 THE1B 368 + 0 368 128904 111 4 6 58 61 66 65 23 22 40 chain 26786 chr3 198022430 + 7347033 7347323 L1HS 6032 - 0 290 97023 290 chain 10346 chr3 198022430 + 7412066 7412302 THE1B 368 + 22 368 158920 50 36 143 13 13 21 57 28 23 39 chain 3028 chr3 198022430 + 7418419 7418455 MER58A 224 + 172 208 224431 36 chain 39823 chr3 198022430 + 7432949 7433405 L1PA5 6144 + 5687 6143 69587 456 chain 3579 chr3 198022430 + 7481123 7481267 LTR40b 463 + 307 456 214002 16 67 71 22 13 14 26 chain 53352 chr3 198022430 + 7489443 7490028 L1PA3long 6157 - 5 590 56804 585 chain 24851 chr3 198022430 + 7506246 7506533 AluY 311 + 11 301 105618 105 0 3 182 chain 24922 chr3 198022430 + 7557876 7558192 AluY 311 + 0 311 105206 44 7 1 87 0 1 178 chain 106680 chr3 198022430 + 7565802 7566962 L1PA3long 6157 + 4997 6157 35072 1160 chain 224946 chr3 198022430 + 7571641 7574454 L1PA7 6471 - 13 3148 17601 9 1 0 127 2 1 184 0 1 23 2 0 485 5 4 25 0 5 24 9 2 218 2 4 134 0 2 75 4 3 75 7 139 192 7 8 44 6 14 382 3 188 225 4 0 23 0 2 96 0 1 420 chain 58646 chr3 198022430 + 7574454 7575195 L1PA7 6471 + 2596 3318 53418 36 10 0 63 8 0 20 4 0 138 0 4 413 1 0 48 chain 119412 chr3 198022430 + 7610111 7611659 LTR12C 1709 + 0 1709 31262 20 0 9 210 2 3 18 0 1 163 0 1 34 3 6 61 1 0 78 0 1 57 4 119 56 1 0 130 0 41 104 1 0 5 3 1 106 11 4 32 0 2 201 1 2 93 1 0 69 1 0 82 chain 28250 chr3 198022430 + 7650356 7650805 L1PA14 3548 - 92 523 92111 41 1 0 17 1 0 11 1 0 9 4 2 33 24 19 103 1 0 84 1 0 6 2 0 13 5 3 5 2 0 85 chain 9449 chr3 198022430 + 7658782 7658911 MER85 139 - 0 135 163318 30 7 13 92 chain 2923 chr3 198022430 + 7702232 7702269 L1ME1 1623 + 255 294 226636 32 0 2 5 chain 12053 chr3 198022430 + 7706204 7706345 L1PA7 6471 - 6 147 151972 141 chain 7752 chr3 198022430 + 7719503 7719618 L1PA16 3655 + 3301 3418 172595 44 13 15 58 chain 3470 chr3 198022430 + 7798345 7798384 THE1B 368 - 1 40 215819 39 chain 33734 chr3 198022430 + 7798400 7798843 LTR10F 562 + 0 531 78037 16 0 1 92 0 56 65 0 24 12 5 11 104 0 1 149 chain 85575 chr3 198022430 + 7802843 7803882 MER11B 1079 + 0 1042 41314 316 1 18 155 1 0 5 18 0 272 5 7 45 0 3 221 chain 42088 chr3 198022430 + 7812208 7812756 MLT2A2 560 - 0 560 66510 51 4 5 4 1 0 9 0 1 77 2 13 400 chain 57277 chr3 198022430 + 7824485 7825148 L1PA4 6152 - 2245 2912 54351 222 0 3 162 0 1 279 chain 194712 chr3 198022430 + 7825148 7827383 L1PA4 6152 + 3914 6152 19602 583 7 11 127 1 0 1057 1 0 398 17 18 44 chain 12611 chr3 198022430 + 7827581 7827759 MER30 238 + 42 232 149804 61 9 15 33 1 7 74 chain 13062 chr3 198022430 + 7839968 7840153 MER30 238 - 1 201 147981 102 18 31 8 0 2 57 chain 38811 chr3 198022430 + 7892958 7893414 L1PA4 6152 - 0 454 71002 6 0 5 140 7 0 303 chain 7865 chr3 198022430 + 7893414 7893502 L1PA4 6152 + 5616 5704 171900 88 chain 18939 chr3 198022430 + 7901418 7901781 THE1B 368 - 0 368 130259 40 23 22 65 9 17 10 0 4 11 1 0 4 38 33 45 8 9 91 1 0 17 chain 44837 chr3 198022430 + 7902095 7902633 L1PA8A 6298 + 5750 6289 63244 369 0 1 22 0 2 8 2 0 137 chain 323151 chr3 198022430 + 7934525 7938425 L1PA6 6164 - 2 3913 12475 174 5 0 48 1 2 105 0 2 476 5 9 17 11 15 47 0 1 269 0 1 321 2 3 31 0 9 266 0 4 47 1 0 28 0 1 332 2 3 253 2 0 480 0 1 27 0 1 639 0 3 216 19 0 14 0 4 62 chain 320797 chr3 198022430 + 7944054 7948481 L1P3 4156 - 17 4155 12567 24 2 1 7 2 0 292 9 4 256 5 9 19 3 1 32 2 1 39 0 5 131 304 0 65 0 1 151 0 4 135 0 9 63 0 4 26 0 1 119 1 4 107 14 1 63 0 2 50 10 3 333 13 17 59 6 8 131 2 0 206 1 0 275 0 2 86 5 0 6 0 5 5 1 0 41 1 0 134 1 0 433 0 15 75 1 0 67 2 1 289 1 0 71 1 0 250 chain 32316 chr3 198022430 + 7975062 7975527 LTR7B 505 - 0 505 80343 25 2 0 5 0 1 20 14 13 79 1 0 82 0 2 23 1 0 5 0 25 24 1 0 6 12 20 57 1 11 107 chain 497452 chr3 198022430 + 7975878 7982051 L1PA6 6164 + 0 6160 6984 187 0 1 701 6 7 33 0 1 216 0 2 63 10 11 228 1 0 159 30 4 28 0 1 316 1 0 223 0 1 24 10 3 59 2 0 64 0 2 229 0 1 613 7 0 8 5 17 67 4 0 7 0 9 404 66 12 50 0 3 224 0 1 386 0 4 57 0 16 201 1 0 341 1 8 55 1 2 241 0 3 16 1 0 6 1 0 385 0 6 188 0 19 247 chain 88043 chr3 198022430 + 7983362 7984384 LTR5A 1029 + 0 1029 40356 19 0 2 126 1 0 732 0 6 144 chain 5661 chr3 198022430 + 8039195 8039338 MER58A 224 - 24 169 188473 18 61 63 64 chain 60543 chr3 198022430 + 8054294 8055064 LTR17 781 - 9 781 52554 36 0 22 275 20 10 102 1 0 18 10 0 40 0 1 268 chain 132765 chr3 198022430 + 8059526 8061828 MER61-int 3695 - 1717 3694 27464 183 7 1 314 1 2 78 1 5 55 1 0 213 8 13 182 16 15 61 3 1 73 0 1 11 0 1 18 259 0 98 28 29 16 33 33 48 4 5 110 23 9 61 0 1 9 3 0 5 5 1 27 1 0 23 5 4 74 39 0 152 1 0 22 14 0 6 0 6 11 chain 372503 chr3 198022430 + 8083048 8088605 L1PB1 5432 + 19 5430 11012 29 11 10 279 0 5 54 13 13 125 12 14 53 2 1 5 0 1 116 26 20 11 0 6 453 14 14 36 15 17 114 1 0 7 68 50 85 0 4 147 0 1 18 1 2 35 0 1 136 0 5 196 1 100 8 1 0 5 0 1 62 18 24 217 0 1 24 0 4 308 4 0 6 1 0 101 54 43 175 0 2 200 0 2 368 0 3 17 0 4 192 13 16 103 0 1 316 3 0 105 4 8 10 0 7 28 0 1 82 3 0 105 0 1 73 1 3 217 0 3 21 6 11 43 302 55 11 2 0 51 2 1 16 1 0 44 1 0 15 3 0 7 44 33 10 2 0 24 1 0 17 5 4 13 1 0 16 1 0 4 1 0 6 chain 26420 chr3 198022430 + 8102176 8102526 L1P1 4361 - 20 367 96727 12 2 1 23 1 0 157 7 6 148 chain 104860 chr3 198022430 + 8102526 8103722 L1PA4 6152 - 2708 3903 35537 229 1 0 966 chain 243539 chr3 198022430 + 8103724 8106429 L1PA4 6152 + 3446 6152 16587 2177 0 1 528 chain 315918 chr3 198022430 + 8106443 8110422 L1P2 5180 - 1164 5178 12768 11 0 2 820 12 11 845 3 0 906 0 5 7 7 2 248 7 10 194 0 25 138 7 5 256 14 0 7 3 16 163 0 21 9 6 0 3 15 0 65 2 1 85 6 17 24 8 8 43 8 10 57 chain 4259 chr3 198022430 + 8127264 8127312 MER63A 208 + 119 167 203759 48 chain 26513 chr3 198022430 + 8155556 8155969 LTR7 482 + 0 482 97998 66 32 20 15 16 15 16 2 53 39 5 37 28 0 1 22 2 0 170 chain 9530 chr3 198022430 + 8166462 8166569 L1PA5 6144 + 6037 6144 162926 107 chain 31420 chr3 198022430 + 8218717 8219128 LTR7 482 + 0 482 81781 69 8 46 109 0 1 33 5 37 187 chain 292684 chr3 198022430 + 8219130 8222735 HERVH-int 3825 + 0 3825 13847 212 0 11 171 0 9 96 0 4 27 1 0 11 1 0 4 0 1 24 1 0 10 1 0 7 0 1 2 5 0 13 7 1 14 1 38 41 1 0 20 44 0 3 20 0 9 2 1 49 1 0 401 0 2 44 15 0 459 4 31 299 0 10 90 0 1 954 9 11 39 8 218 260 0 2 225 chain 32056 chr3 198022430 + 8223992 8224403 LTR7 482 + 0 482 80765 69 8 46 109 0 1 33 0 1 4 1 32 187 chain 14494 chr3 198022430 + 8249922 8250308 MSTB 430 - 15 421 142904 76 125 152 21 54 47 110 chain 2666 chr3 198022430 + 8260781 8260825 MADE1 96 - 51 96 230812 28 5 6 11 chain 12976 chr3 198022430 + 8283142 8283292 L1PA5 6144 + 5988 6138 148324 150 chain 4147 chr3 198022430 + 8303767 8304022 L1M4c 1769 - 651 904 205279 23 79 69 22 96 104 35 chain 35106 chr3 198022430 + 8319187 8319661 MER4A1 472 + 0 472 76042 110 1 0 93 1 0 66 0 4 6 4 1 96 6 5 91 chain 22447 chr3 198022430 + 8367609 8367932 SVA_C 1631 + 792 1292 118263 20 0 82 36 1 5 8 0 87 41 8 9 87 4 6 7 2 0 53 0 3 56 chain 99931 chr3 198022430 + 8375259 8376361 L1PA3long 6157 - 1818 2924 36717 394 0 1 253 0 3 455 chain 166470 chr3 198022430 + 8376361 8378208 L1PA3long 6157 + 4309 6149 22462 234 4 0 1476 13 9 9 0 1 111 chain 32692 chr3 198022430 + 8383580 8384008 LTR71A 459 + 0 438 79699 169 0 8 23 0 1 159 1 0 4 0 1 11 11 12 50 chain 33891 chr3 198022430 + 8397854 8398329 MLT2A2 560 + 21 543 77793 159 1 0 126 1 33 19 6 5 36 18 35 109 chain 26489 chr3 198022430 + 8403141 8403516 THE1C 375 - 0 374 98083 158 38 37 179 chain 502358 chr3 198022430 + 8413520 8419732 L1PA7 6471 + 19 6466 6706 177 1 2 39 30 39 124 0 200 142 0 5 505 24 42 297 0 1 55 0 1 115 0 1 1221 0 1 225 0 1 59 0 6 244 0 2 6 1 2 787 0 2 48 3 2 217 0 1 18 0 2 125 0 1 79 0 4 132 1 0 15 24 15 634 1 0 89 2 0 5 5 7 144 11 1 39 0 1 421 1 3 4 1 0 132 2 0 7 chain 27564 chr3 198022430 + 8419807 8420180 MLT2A1 477 + 7 383 94456 59 0 2 40 9 10 50 6 4 7 0 1 24 0 1 178 chain 188991 chr3 198022430 + 8432055 8434111 L1PA3long 6157 + 4101 6157 20147 2056 chain 7255 chr3 198022430 + 8437377 8437575 L1PB3 3668 + 3442 3614 175730 33 21 7 18 1 0 3 1 0 25 12 10 28 7 3 11 7 6 10 6 3 15 chain 160584 chr3 198022430 + 8480703 8482932 SVA_D 2077 + 0 2075 23255 650 258 17 23 2 0 82 0 40 99 10 9 24 22 11 30 13 113 128 49 0 109 0 4 6 22 43 13 4 0 664 11 0 10 chain 12391 chr3 198022430 + 8481353 8481513 SVA_D 2077 + 454 650 145574 40 12 48 108 chain 1107 chr3 198022430 + 8481552 8481611 SVA_D 2077 + 569 628 147305 59 chain 2895 chr3 198022430 + 8482044 8482093 SVA_D 2077 + 1050 1099 80336 49 chain 29947 chr3 198022430 + 8490024 8490360 L1PA3long 6157 + 5823 6157 84978 187 2 0 147 chain 23944 chr3 198022430 + 8491560 8491923 THE1B 368 - 1 368 110655 55 1 2 4 1 0 68 1 0 6 1 0 18 0 1 4 8 14 26 1 0 78 0 14 8 15 1 68 chain 22170 chr3 198022430 + 8499272 8499531 AluYk4 311 + 41 300 119496 259 chain 30254 chr3 198022430 + 8519595 8519911 AluYb8 318 - 2 318 84051 316 chain 5520 chr3 198022430 + 8520039 8520108 MADE1 96 + 0 96 189837 40 0 27 29 chain 20665 chr3 198022430 + 8522731 8523092 THE1C 375 - 0 375 125088 96 1 2 25 0 1 9 39 49 10 8 11 20 0 1 32 16 14 105 chain 4716 chr3 198022430 + 8568746 8568885 MIRb 242 + 91 235 198324 33 0 1 6 68 72 32 chain 17498 chr3 198022430 + 8581526 8581730 L1PA5 6144 - 15 220 134273 108 0 1 96 chain 11859 chr3 198022430 + 8581730 8581866 L1PA5 6144 + 5797 5933 152793 136 chain 8877 chr3 198022430 + 8587868 8588054 MER30 238 - 0 202 166247 23 5 15 37 6 5 20 1 30 10 11 0 30 12 1 31 chain 24471 chr3 198022430 + 8644411 8644764 THE1A 353 + 0 353 107697 15 2 0 4 0 1 25 9 10 35 5 4 14 4 5 240 chain 11393 chr3 198022430 + 8647056 8647195 L1PA6 6164 - 7 147 154730 4 0 1 135 chain 13579 chr3 198022430 + 8651644 8651975 THE1B 368 + 0 341 146061 11 2 0 32 78 86 40 1 0 16 50 55 101 chain 540209 chr3 198022430 + 8653210 8659219 L1PA3long 6157 + 1 6157 2787 5 3 0 146 0 1 174 0 13 354 0 8 74 0 128 677 0 3 338 0 5 1335 0 1 434 0 2 468 0 1 595 17 6 1314 1 0 74 chain 3438 chr3 198022430 + 8674261 8674303 MIR3 191 - 79 121 216432 42 chain 9839 chr3 198022430 + 8711817 8711934 HERVE-int 4064 + 0 117 161402 117 chain 335243 chr3 198022430 + 8715041 8725503 HERVE-int 4064 + 0 4064 12019 287 7 0 47 5 0 192 0 4 281 3 0 240 1 0 43 5 6 433 1 2 643 4218 0 31 2189 0 886 2 1 300 0 10 71 1 0 79 5 14 305 0 2 187 chain 43938 chr3 198022430 + 8717264 8717769 HERVE-int 4064 + 2210 2717 64283 26 0 1 378 0 1 101 chain 1447 chr3 198022430 + 8718888 8718981 HERVE-int 4064 + 2118 2211 60280 93 chain 44929 chr3 198022430 + 8718991 8719493 HERVE-int 4064 + 2215 2717 63137 502 chain 7859 chr3 198022430 + 8721483 8721988 HERVE-int 4064 + 2211 2717 60280 404 0 1 101 chain 7492 chr3 198022430 + 8723573 8723664 HERVE-int 4064 + 2118 2209 174197 91 chain 540919 chr3 198022430 + 8757764 8763775 L1PA3long 6157 + 0 6152 2678 152 0 1 211 0 1 411 0 128 672 5 8 1033 0 1 558 0 1 55 8 12 886 0 1 49 0 1 1971 chain 4644 chr3 198022430 + 8800637 8800792 MER5A1 166 + 0 162 199137 18 69 59 44 6 23 18 chain 23103 chr3 198022430 + 8817714 8817998 AluSc 308 + 10 293 115123 247 1 0 36 chain 3252 chr3 198022430 + 8827701 8827843 MLT1D 503 + 253 404 219967 20 91 100 31 chain 23603 chr3 198022430 + 8835325 8835604 AluY 311 + 0 285 112565 117 0 6 162 chain 26124 chr3 198022430 + 8838043 8838682 L1PB1 5432 + 4898 5423 99511 75 41 47 83 105 13 18 1 0 13 1 0 9 22 16 5 0 1 58 1 0 45 39 27 19 2 0 5 1 0 14 10 8 16 1 0 22 1 0 12 1 0 19 chain 5729 chr3 198022430 + 8866828 8866896 MER3 215 - 133 201 187846 68 chain 16913 chr3 198022430 + 8869667 8870010 MER47A 366 + 0 330 135818 14 58 57 15 2 0 67 20 0 11 0 8 27 2 1 95 6 9 26 chain 9446 chr3 198022430 + 8917824 8917993 Tigger4a 237 - 0 184 163334 55 1 12 52 5 4 22 21 26 13 chain 12809 chr3 198022430 + 8951426 8951602 MER30 238 - 0 205 149020 108 3 32 11 0 1 38 1 0 15 chain 539551 chr3 198022430 + 8963645 8969736 L1PA4 6152 + 10 6134 2894 446 8 29 558 0 2 1088 0 3 589 0 2 1624 0 4 1683 0 1 95 chain 26592 chr3 198022430 + 8987149 8987453 AluSc5 308 - 4 308 97691 304 chain 13887 chr3 198022430 + 8993822 8994000 MLT1A-int 1186 - 7 184 144963 172 1 0 5 chain 4552 chr3 198022430 + 9028147 9028256 MIR 256 - 71 185 200193 16 40 45 53 chain 3265 chr3 198022430 + 9051170 9051236 ORSL 269 - 111 199 219678 13 17 39 36 chain 10710 chr3 198022430 + 9059958 9060179 L1MA4A 3247 - 79 290 157371 20 23 17 22 20 19 109 13 10 14 chain 13143 chr3 198022430 + 9118657 9118809 L1PA6 6164 - 8 160 147674 152 chain 9354 chr3 198022430 + 9123520 9123660 MLT1A0 366 + 0 139 163786 24 18 17 98 chain 2929 chr3 198022430 + 9126294 9126325 MLT1L 557 + 525 556 226528 31 chain 17690 chr3 198022430 + 9155283 9155593 THE1C 375 + 0 328 133727 49 0 4 34 7 8 13 1 0 5 0 1 62 61 74 78 chain 22916 chr3 198022430 + 9169146 9169430 AluSc 308 - 25 308 116028 151 2 1 131 chain 27539 chr3 198022430 + 9186132 9186486 THE1A 353 + 0 353 94538 110 2 1 71 1 0 143 0 1 27 chain 6022 chr3 198022430 + 9214086 9214197 MLT1C 463 - 337 450 185040 63 9 10 13 4 6 7 1 0 14 chain 24086 chr3 198022430 + 9228651 9228924 L1PA7 6471 - 4 277 109822 273 chain 4957 chr3 198022430 + 9236720 9236937 MER63B 433 - 65 280 195625 40 127 130 5 1 0 34 4 0 6 chain 12303 chr3 198022430 + 9261545 9261722 L1MA4 2864 + 2524 2698 151002 131 22 19 24 chain 29266 chr3 198022430 + 9270463 9270774 AluYb8 318 + 0 310 87716 15 1 0 295 chain 28854 chr3 198022430 + 9278078 9278466 MSTA 426 + 16 405 89650 185 3 0 9 13 19 7 2 0 169 chain 8380 chr3 198022430 + 9278933 9279050 MER20 218 + 29 146 168961 54 3 4 4 1 0 55 chain 541273 chr3 198022430 + 9301540 9308068 L1PA7 6471 + 0 6470 2626 55 0 4 166 15 0 12 11 26 147 0 2 187 0 1 311 51 0 299 0 4 516 0 1 242 25 15 382 0 1 150 0 2 109 13 0 110 0 1 357 0 4 393 3 0 24 1 0 287 0 1 18 0 1 1127 1 0 30 1 0 636 0 4 85 3 1 750 2 0 9 chain 6836 chr3 198022430 + 9324063 9324153 Charlie1a 1436 - 243 333 178689 90 chain 115999 chr3 198022430 + 9347099 9348433 L1PA6 6164 - 3 1332 32457 631 3 0 426 1 0 123 1 0 149 chain 5153 chr3 198022430 + 9359420 9359499 MER5A 189 - 108 189 193518 28 6 7 34 0 1 11 chain 26227 chr3 198022430 + 9361966 9362387 MSTA 426 + 2 426 99103 19 1 0 7 0 1 8 16 15 90 7 6 57 2 0 33 8 7 47 18 26 108 chain 137307 chr3 198022430 + 9366656 9368437 MER57-int 2662 - 330 2136 26588 423 3 0 117 5 6 166 0 15 5 0 1 189 7 6 32 1 3 13 10 9 239 0 4 226 0 8 274 1 0 70 chain 3428 chr3 198022430 + 9378491 9378566 MLT2B4 540 - 7 94 216622 25 22 34 28 chain 6442 chr3 198022430 + 9402668 9402775 L1MB7 1623 - 443 554 181690 13 4 6 63 6 8 21 chain 10504 chr3 198022430 + 9416006 9416133 7SLRNA 320 + 74 201 158234 127 chain 10296 chr3 198022430 + 9436743 9436949 MER30 238 - 0 214 159151 36 4 7 26 4 19 23 14 0 8 8 0 8 10 22 65 chain 26603 chr3 198022430 + 9487690 9487992 AluYk4 311 + 1 303 97646 302 chain 23496 chr3 198022430 + 9500550 9500845 HSMAR1 1287 - 2 301 113145 240 0 1 12 0 3 43 chain 3917 chr3 198022430 + 9520542 9520617 MER58A 224 - 9 83 208598 38 17 16 20 chain 14788 chr3 198022430 + 9531079 9531312 Tigger3a 397 - 74 365 141975 84 0 1 54 1 2 33 24 73 22 0 7 15 chain 7535 chr3 198022430 + 9557698 9557900 L1MC1 2226 - 890 1102 173948 60 67 81 21 7 6 21 3 0 23 chain 22168 chr3 198022430 + 9571010 9571309 Tigger1 2417 - 822 1118 119508 27 2 0 62 5 4 203 chain 2889 chr3 198022430 + 9583469 9583501 L1MB8 1703 + 613 645 227206 32 chain 76919 chr3 198022430 + 9601042 9602064 SVA_D 2077 + 0 1208 45015 22 4 0 548 46 10 44 40 0 35 0 37 22 10 13 36 2 0 13 21 64 64 0 185 115 chain 113521 chr3 198022430 + 9611156 9612416 SVA_C 1631 + 25 1612 33220 142 0 32 478 0 120 58 0 175 582 chain 5843 chr3 198022430 + 9612698 9612769 LTR49 580 - 32 104 186744 16 0 1 55 chain 23194 chr3 198022430 + 9614630 9614918 AluSg7 307 + 4 291 114702 128 8 7 152 chain 31622 chr3 198022430 + 9627949 9628389 L1PB3 3668 - 378 823 81447 209 0 2 55 3 5 15 5 2 15 2 0 120 4 10 12 chain 32300 chr3 198022430 + 9631837 9632336 LTR2B 499 + 0 499 80365 13 2 1 38 22 34 21 1 0 18 8 0 208 20 19 92 1 0 55 chain 5365 chr3 198022430 + 9632692 9632942 LTR8 732 + 0 251 67055 55 1 2 194 chain 93550 chr3 198022430 + 9632959 9634106 SVA_D 2077 + 0 1740 38493 15 13 1 15 0 24 66 1 2 256 1 0 163 0 80 96 10 13 30 40 0 156 0 538 285 chain 3304 chr3 198022430 + 9633625 9633663 SVA_D 2077 + 605 643 191979 38 chain 6674 chr3 198022430 + 9634323 9634634 LTR8 732 + 251 566 67055 164 0 4 147 chain 8385 chr3 198022430 + 9641835 9641947 LTR8 732 - 595 701 168931 95 6 0 11 chain 21920 chr3 198022430 + 9650056 9650321 AluSg7 307 - 41 307 120544 134 0 1 131 chain 14212 chr3 198022430 + 9650970 9651266 THE1B 368 - 65 368 143841 61 10 18 6 0 4 12 0 1 8 92 86 107 chain 10561 chr3 198022430 + 9651266 9651387 Tigger2a 444 + 161 282 157991 121 chain 3482 chr3 198022430 + 9663536 9663582 LTR23 429 - 157 201 215635 6 2 0 38 chain 51770 chr3 198022430 + 9672070 9672752 LTR8 732 - 13 690 57774 29 0 2 151 15 12 349 2 0 115 2 0 19 chain 20614 chr3 198022430 + 9681905 9682182 HUERS-P1-int 2401 - 1406 1681 125249 165 4 3 49 0 2 21 3 0 35 chain 90352 chr3 198022430 + 9684990 9686059 L1PA6 6164 + 5092 6161 39521 302 0 2 520 0 1 232 3 0 12 chain 22098 chr3 198022430 + 9697606 9697895 AluSc 308 + 0 297 119795 41 9 17 239 chain 4267 chr3 198022430 + 9734987 9735041 MER2 342 + 190 246 203652 5 0 2 49 chain 24536 chr3 198022430 + 9758158 9758453 AluSp 311 - 16 311 107333 167 2 0 97 0 2 29 chain 12580 chr3 198022430 + 9821196 9821332 L1PA5 6144 + 5990 6126 149918 136 chain 4466 chr3 198022430 + 9824935 9824990 L1MB2 1706 + 1639 1694 201157 55 chain 8230 chr3 198022430 + 9840968 9841104 Tigger4a 237 - 0 162 169780 42 1 19 23 1 2 6 1 0 20 3 11 39 chain 3147 chr3 198022430 + 9857002 9857053 MIR 256 + 82 134 221991 17 6 7 28 chain 17769 chr3 198022430 + 9881610 9881826 AluSg4 309 - 57 272 133516 129 1 0 86 chain 22229 chr3 198022430 + 9886348 9886595 AluY 311 + 63 311 119211 201 0 1 46 chain 79828 chr3 198022430 + 9889345 9890328 LTR5_Hs 974 - 0 974 43671 103 2 0 37 8 15 178 1 0 129 19 0 226 0 1 245 0 1 27 0 4 8 chain 307627 chr3 198022430 + 9891184 9895318 HERVK-int 6823 - 303 6823 13107 11 1 0 5 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 40 29 29 2 0 12 3 1 14 1 0 12 2 0 9 192 117 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 6 1 0 5 3 0 49 1 0 125 1 0 35 1 0 7 1 0 50 0 288 563 0 2255 140 0 2 584 4 0 123 1 0 7 8 3 370 1 0 11 0 3 425 1 0 309 2 1 21 1 0 26 2 0 205 1 0 314 39 24 17 1 0 31 8 7 20 1 0 23 4 2 12 1 0 5 chain 76235 chr3 198022430 + 9895318 9896236 LTR5_Hs 974 - 0 974 45346 103 6 4 31 11 17 269 0 7 257 0 1 169 0 41 25 0 3 47 chain 26863 chr3 198022430 + 9900672 9901025 THE1A 353 + 0 353 96762 110 4 3 218 6 7 15 chain 5420 chr3 198022430 + 9914856 9914918 L1MB7 1623 - 829 891 190799 62 chain 23756 chr3 198022430 + 9915013 9915318 AluY 311 + 0 294 111732 53 10 4 74 0 2 150 7 0 11 chain 23544 chr3 198022430 + 9947227 9947516 AluSc8 310 + 5 297 112889 127 0 3 162 chain 23238 chr3 198022430 + 9947664 9947938 AluSp 311 + 13 286 114502 252 1 0 21 chain 4166 chr3 198022430 + 9979005 9979100 MIRb 242 - 106 213 205011 19 9 7 30 15 29 22 chain 122020 chr3 198022430 + 9981015 9982408 SVA_D 2077 - 1 2077 30379 11 3 0 627 0 535 63 0 40 33 0 116 631 6 1 19 chain 76904 chr3 198022430 + 10094379 10095221 L1PA3long 6157 + 5314 6157 45027 678 0 1 164 chain 22566 chr3 198022430 + 10103560 10103816 L1PA4 6152 + 5897 6152 117734 99 0 1 150 2 0 5 chain 9138 chr3 198022430 + 10109065 10109198 L1MA3 4352 + 1741 1877 164866 41 0 1 4 4 5 38 0 1 46 chain 145934 chr3 198022430 + 10111162 10112827 SVA_D 2077 + 45 2077 25180 13 0 6 478 0 40 246 40 0 84 1 0 4 0 138 159 1 0 7 0 225 632 chain 52826 chr3 198022430 + 10112842 10113952 L1MA3 4352 + 3546 4328 57121 308 0 4 122 8 22 53 0 2 33 377 38 107 4 0 25 2 0 22 1 0 6 4 3 24 1 0 13 chain 76958 chr3 198022430 + 10138592 10139639 MER11C 1089 - 26 1089 44994 25 0 1 121 2 1 49 0 1 127 0 1 38 1 0 4 1 5 112 22 21 171 1 0 65 0 4 40 21 30 247 chain 23684 chr3 198022430 + 10144227 10144544 AluY 311 + 1 300 112128 51 34 16 55 1 0 9 0 1 167 chain 23802 chr3 198022430 + 10154499 10154798 AluSp 311 + 0 292 111465 128 6 0 153 2 1 10 chain 41205 chr3 198022430 + 10176237 10176795 LTR19B 566 + 0 566 67642 179 22 2 77 0 1 81 0 4 89 0 6 6 10 9 37 0 9 11 0 3 34 0 6 12 chain 19712 chr3 198022430 + 10177560 10178035 LTR12C 1709 - 188 940 128060 23 224 502 159 1 0 68 chain 6247 chr3 198022430 + 10182855 10182934 U13 108 + 23 108 183184 18 0 6 61 chain 8787 chr3 198022430 + 10186450 10186544 L1PA5 6144 - 5 99 166727 94 chain 29035 chr3 198022430 + 10189994 10190297 AluYa5 310 - 7 310 88829 303 chain 2965 chr3 198022430 + 10196410 10196441 MER21A 919 + 25 56 225777 31 chain 4888 chr3 198022430 + 10211582 10211641 MER11A 1151 - 931 988 196392 21 2 0 36 chain 23345 chr3 198022430 + 10230222 10230485 AluSp 311 - 24 287 113955 263 chain 13029 chr3 198022430 + 10253913 10254098 MER30 238 + 37 238 148136 62 11 0 11 2 28 85 0 1 14 chain 24370 chr3 198022430 + 10255603 10255903 AluSz6 309 - 0 300 108263 300 chain 3891 chr3 198022430 + 10271318 10271411 L1ME1 1623 - 106 191 208998 18 20 14 36 6 4 13 chain 26552 chr3 198022430 + 10279209 10279509 AluYk4 311 + 0 301 97833 236 0 1 64 chain 47162 chr3 198022430 + 10286698 10287274 LTR10C 591 + 0 591 61078 101 0 5 29 0 4 188 1 3 136 1 3 66 0 2 54 chain 3314 chr3 198022430 + 10287285 10287379 L1MB8 1703 + 1455 1567 218693 21 23 39 22 10 12 18 chain 107380 chr3 198022430 + 10339099 10340266 L1PA3long 6157 - 0 1171 34869 849 0 4 318 chain 24646 chr3 198022430 + 10358418 10358711 AluSp 311 + 15 308 106743 293 chain 3173 chr3 198022430 + 10424842 10424879 MER5A1 166 - 88 125 221511 37 chain 4670 chr3 198022430 + 10451848 10451956 L1PB1 5432 - 5 105 198864 5 2 0 18 5 4 9 1 0 21 7 6 18 2 0 15 1 0 4 chain 5448 chr3 198022430 + 10462669 10462751 MER5A 189 + 16 99 190544 60 1 0 6 1 3 14 chain 6565 chr3 198022430 + 10472213 10472295 Tigger1 2417 - 599 681 180746 82 chain 25244 chr3 198022430 + 10513507 10513785 AluY 311 + 25 303 103505 278 chain 226492 chr3 198022430 + 10579953 10582563 L1PA5 6144 + 3524 6144 17510 418 0 1 398 0 4 417 0 6 250 1 0 1126 chain 7301 chr3 198022430 + 10584893 10584976 MLT1B 390 + 289 372 175440 83 chain 111951 chr3 198022430 + 10635151 10636396 L1PA5 6144 + 4885 6128 33678 409 2 0 834 chain 18100 chr3 198022430 + 10691348 10691701 THE1B 368 + 0 368 132598 44 0 15 64 5 0 49 1 0 26 48 58 27 18 18 34 13 9 24 chain 93318 chr3 198022430 + 10691701 10692942 THE1B-int 1605 + 0 1605 38560 12 6 8 13 0 2 219 0 1 71 7 0 106 15 40 125 0 1 97 2 10 17 0 331 148 19 20 384 chain 20527 chr3 198022430 + 10692942 10693279 THE1B 368 + 0 356 125552 36 13 28 59 5 0 49 1 0 26 35 45 113 chain 505175 chr3 198022430 + 10699194 10704915 L1PA5 6144 + 391 6128 6522 645 0 2 73 14 14 67 0 1 1573 2 0 890 0 1 608 1 0 808 0 9 1025 0 6 15 chain 3877 chr3 198022430 + 10736150 10736194 L1MD2 1676 - 288 332 209194 44 chain 25265 chr3 198022430 + 10736754 10737149 THE1B 368 - 0 366 103393 170 43 0 17 10 9 114 1 16 40 chain 2865 chr3 198022430 + 10757546 10757576 MER3 215 - 5 35 227586 30 chain 10624 chr3 198022430 + 10758994 10759129 L1PA5 6144 + 6011 6144 157712 121 3 1 11 chain 30190 chr3 198022430 + 10772161 10772564 LTR7 482 + 0 475 84225 69 8 46 109 9 41 121 0 2 87 chain 33957 chr3 198022430 + 10778006 10778384 L1PA5 6144 - 16 394 77683 378 chain 5351 chr3 198022430 + 10788531 10788597 MIRc 230 + 66 132 191524 66 chain 2998 chr3 198022430 + 10809463 10809496 MER103C 291 + 200 233 225079 33 chain 11347 chr3 198022430 + 10844205 10844400 Ricksha_0 1343 - 1151 1343 154906 30 7 8 59 1 0 34 28 25 36 chain 4178 chr3 198022430 + 10936209 10936279 L1MA8 2339 + 2021 2081 204842 6 5 0 34 5 0 20 chain 117256 chr3 198022430 + 10938923 10940512 THE1B-int 1605 - 5 1605 32038 77 0 5 748 0 1 41 51 48 4 0 1 176 40 20 23 2 27 411 5 7 11 chain 2924 chr3 198022430 + 10983186 10983222 MIRb 242 + 104 140 226603 36 chain 3312 chr3 198022430 + 11049808 11049850 MIR 256 + 97 139 218732 42 chain 80690 chr3 198022430 + 11068448 11069484 MER11C 1089 - 4 1089 43310 134 0 15 97 0 1 56 6 14 169 12 13 249 1 18 40 12 15 175 1 5 84 chain 18260 chr3 198022430 + 11086010 11086339 MSTB 430 + 23 392 132175 46 0 1 74 11 28 15 16 13 13 40 65 114 chain 10193 chr3 198022430 + 11103619 11103829 LTR12C 1709 + 703 877 159661 46 76 0 68 0 40 20 chain 1348 chr3 198022430 + 11103679 11103716 LTR12C 1709 + 645 683 190383 4 0 1 33 chain 31722 chr3 198022430 + 11105518 11105949 LTR12F 595 - 64 595 81296 139 0 1 151 18 0 14 8 49 31 0 76 70 chain 71210 chr3 198022430 + 11116389 11117332 LTR12 884 - 8 884 47843 168 1 0 331 2 0 90 64 0 287 chain 3682 chr3 198022430 + 11116981 11117040 LTR12 884 - 795 829 170757 5 25 0 29 chain 14744 chr3 198022430 + 11136152 11136483 LTR12C 1709 + 769 1203 142124 35 0 1 4 1 0 19 11 170 73 0 47 64 103 0 21 chain 2916 chr3 198022430 + 11136426 11136458 LTR12C 1709 + 686 718 226767 32 chain 9765 chr3 198022430 + 11145899 11146052 L1MA8 2339 - 846 1002 161769 19 8 10 31 5 6 90 chain 30172 chr3 198022430 + 11146132 11146531 MLT2A2 560 + 0 560 84267 81 0 146 82 0 18 137 8 3 56 0 2 35 chain 94901 chr3 198022430 + 11154780 11155849 L1PA5 6144 + 5057 6132 38122 235 1 5 38 0 1 699 0 1 96 chain 36034 chr3 198022430 + 11173512 11173987 LTR2B 499 + 8 499 74857 6 1 0 60 3 0 27 0 7 9 0 12 175 12 13 182 chain 5851 chr3 198022430 + 11213184 11213265 MER5A1 166 + 50 128 186681 10 3 0 68 chain 23432 chr3 198022430 + 11248985 11249270 AluY 311 + 17 298 113466 101 6 0 14 0 1 20 0 1 144 chain 5188 chr3 198022430 + 11259293 11259396 L1MB3 1562 + 1442 1555 193161 21 6 5 12 0 12 29 10 9 25 chain 4658 chr3 198022430 + 11270104 11270218 MER5B 177 + 71 177 198974 25 24 18 15 2 0 7 6 6 35 chain 11707 chr3 198022430 + 11283069 11283211 LTR12F 595 + 0 143 153434 103 0 1 39 chain 25880 chr3 198022430 + 11290800 11291110 AluY 311 + 0 304 100526 129 6 0 175 chain 34936 chr3 198022430 + 11297166 11297615 MER4A1 472 - 0 472 76284 104 0 2 98 1 0 15 1 22 194 1 0 19 0 2 16 chain 9937 chr3 198022430 + 11308916 11309039 MER41B 635 + 511 635 160892 95 0 1 28 chain 5855 chr3 198022430 + 11312016 11312128 MER92B 628 + 184 298 186643 30 28 29 4 0 1 50 chain 29734 chr3 198022430 + 11312176 11312620 LTR7B 505 - 10 497 85715 41 14 13 76 1 0 83 0 2 8 32 0 20 3 27 12 0 38 60 0 10 13 0 3 81 chain 27720 chr3 198022430 + 11312905 11313206 AluYa5 310 - 10 310 93969 174 1 0 126 chain 86247 chr3 198022430 + 11319074 11320163 MER11A 1151 - 0 1151 41059 231 0 35 26 6 40 16 1 0 121 6 9 104 7 0 276 0 2 60 0 4 28 2 0 21 8 0 68 0 2 108 chain 25797 chr3 198022430 + 11345266 11345577 AluY 311 + 0 295 100884 73 0 1 52 17 0 169 chain 4097 chr3 198022430 + 11364603 11364731 MER63A 208 - 0 127 205992 27 64 63 37 chain 13981 chr3 198022430 + 11376760 11376959 MER30 238 - 0 238 144644 106 7 0 7 3 31 58 1 19 17 chain 57931 chr3 198022430 + 11389731 11390760 LTR12 884 - 11 884 54016 11 5 6 100 0 8 15 23 0 78 14 17 10 19 3 38 13 18 168 2 24 13 90 0 10 41 0 63 1 3 212 25 0 33 1 0 18 1 0 25 chain 62685 chr3 198022430 + 11393327 11394045 L1PA5 6144 - 0 718 51599 718 chain 4883 chr3 198022430 + 11403078 11403160 MER53 195 + 88 179 196444 18 8 10 18 0 7 38 chain 8732 chr3 198022430 + 11443525 11443624 MER41E 591 + 0 98 167017 16 1 0 82 chain 24863 chr3 198022430 + 11446089 11446449 THE1B 368 - 0 368 105555 11 0 1 116 40 47 17 0 1 6 1 0 169 chain 112849 chr3 198022430 + 11448435 11449959 THE1B-int 1605 - 33 1585 33418 67 5 12 53 1 0 102 0 1 110 13 0 91 0 2 11 49 50 494 1 0 125 1 26 84 0 2 38 1 2 101 7 10 146 0 1 24 chain 20730 chr3 198022430 + 11453460 11453855 LOR1b 457 - 2 416 124855 17 6 5 17 7 4 26 15 18 8 1 0 139 59 81 24 1 0 75 chain 28884 chr3 198022430 + 11481797 11482097 AluYa5 310 - 10 310 89515 300 chain 533300 chr3 198022430 + 11526026 11533958 L1PA3long 6157 - 0 6153 3805 146 2 9 551 0 3 965 0 1 118 0 4 478 1865 0 499 83 7 167 1 0 66 0 4 743 0 4 33 0 2 1603 0 138 612 chain 130185 chr3 198022430 + 11528304 11529773 SVA_F 1814 - 0 1479 28051 600 0 49 199 52 18 31 1 0 37 1 0 100 1 0 19 1 0 53 1 0 373 chain 4468 chr3 198022430 + 11529103 11529155 SVA_F 1814 - 672 802 131576 35 5 83 12 chain 7681 chr3 198022430 + 11530650 11530733 L1PA3long 6157 - 5497 5580 170753 83 chain 40497 chr3 198022430 + 11543700 11544145 L1PA3long 6157 - 0 445 68593 445 chain 119526 chr3 198022430 + 11552348 11555281 LTR12C 1709 - 0 1709 31208 168 0 102 211 0 4 107 2 0 6 1 0 74 0 41 43 1489 0 99 0 118 265 6 9 462 chain 57386 chr3 198022430 + 11552960 11553634 LTR12C 1709 - 1034 1709 49509 152 0 1 208 1 0 4 0 1 309 chain 5330 chr3 198022430 + 11553986 11554048 LTR12C 1709 - 12 74 191728 62 chain 28989 chr3 198022430 + 11554066 11554449 LTR12C 1709 - 222 597 75558 259 38 32 78 3 1 5 chain 12776 chr3 198022430 + 11557682 11557820 L1PA4 6152 + 6013 6151 149152 138 chain 67368 chr3 198022430 + 11636729 11637467 L1PA3long 6157 + 5416 6157 49500 600 0 3 138 chain 16080 chr3 198022430 + 11647447 11647802 THE1B 368 - 0 368 138114 56 1 2 5 2 0 52 69 78 33 48 52 62 0 1 27 chain 30639 chr3 198022430 + 11647968 11648476 LTR12F 595 + 0 595 83142 24 13 14 48 0 1 15 1 2 18 1 0 8 21 85 9 25 0 16 18 0 47 8 72 236 chain 23778 chr3 198022430 + 11674868 11675158 AluSc 308 + 8 295 111601 49 2 1 73 2 0 164 chain 28079 chr3 198022430 + 11686782 11687092 AluYb8 318 + 0 303 92717 242 7 0 61 chain 25245 chr3 198022430 + 11700794 11701106 AluSp 311 - 1 310 103501 190 1 0 37 1 0 26 2 1 55 chain 9481 chr3 198022430 + 11774838 11774971 LTR34 700 - 537 682 163156 104 3 17 17 2 0 7 chain 25693 chr3 198022430 + 11803140 11803440 AluSx1 309 + 2 302 101316 300 chain 32764 chr3 198022430 + 11838240 11838828 L1PA13 3608 + 2977 3548 79590 60 1 0 59 13 14 22 0 13 14 1 0 80 36 34 62 1 0 27 1 0 28 0 1 5 2 0 47 2 0 5 2 0 13 2 1 4 1 0 22 6 3 13 5 0 14 1 0 4 23 14 12 chain 524495 chr3 198022430 + 11903465 11909604 L1PA6 6164 - 2 6163 4726 6 2 0 834 1 5 132 0 1 251 1 2 429 0 1 4 1 0 127 0 2 885 1 4 102 0 1 186 6 8 500 1 0 346 5 6 1010 0 5 748 1 0 55 1 2 45 7 11 242 1 2 209 chain 13522 chr3 198022430 + 11931423 11931620 L1MA3 4352 + 4134 4328 146273 126 2 0 7 0 2 13 9 7 26 1 0 13 chain 222014 chr3 198022430 + 11933724 11936346 L1PA5 6144 - 0 2608 17759 735 0 1 71 0 1 38 1 5 380 2 3 24 0 1 713 18 0 149 0 1 256 1 0 89 4 0 141 chain 236184 chr3 198022430 + 11936355 11939224 L1PA5 6144 + 724 3540 16968 228 24 0 110 3 1 102 13 4 29 0 1 203 0 1 261 0 1 71 9 10 27 27 0 540 3 1 302 0 1 553 0 1 48 7 11 66 0 1 243 chain 64932 chr3 198022430 + 11959639 11960539 LTR12 884 + 0 884 50602 24 1 0 50 2 0 179 0 91 34 2 0 336 102 0 170 chain 63943 chr3 198022430 + 11973403 11974130 L1PA4 6152 + 5413 6140 51031 727 chain 29293 chr3 198022430 + 11986626 11987129 L1PA15 4387 - 31 514 87611 28 6 1 11 2 0 46 17 14 36 16 13 22 1 0 46 10 9 26 1 0 41 3 0 7 0 3 121 1 0 25 1 0 15 4 2 17 chain 100448 chr3 198022430 + 11987970 11989096 L1PA5 6144 - 2 1133 36642 145 0 1 44 0 1 39 0 1 99 0 1 67 0 1 732 chain 3355 chr3 198022430 + 11990157 11990221 MIRb 242 + 25 123 217959 28 0 28 9 11 17 16 chain 23359 chr3 198022430 + 12016765 12017027 AluY 311 + 31 293 113876 262 chain 493894 chr3 198022430 + 12069521 12074865 L1PA2 6032 - 141 6014 7179 11 0 7 110 1 0 3201 1 0 1940 0 524 80 chain 30100 chr3 198022430 + 12092216 12092534 AluYb8 318 - 0 318 84497 318 chain 173654 chr3 198022430 + 12120237 12122393 L1PA10 4194 - 33 2193 21627 10 2 1 34 3 0 269 0 2 236 0 1 382 2 1 118 8 9 370 0 2 43 3 7 46 5 0 170 0 1 131 1 0 309 0 4 14 chain 21504 chr3 198022430 + 12130685 12130990 THE1B 368 - 62 368 122132 64 1 0 12 1 0 16 0 4 10 1 0 5 8 10 12 5 4 65 1 0 104 chain 53715 chr3 198022430 + 12138533 12139518 L1PA5 6144 + 5498 6144 56535 222 8 0 53 327 0 266 5 4 81 2 0 8 2 1 11 chain 24159 chr3 198022430 + 12152271 12152554 THE1B-int 1605 + 1320 1605 109438 174 0 2 109 chain 3956 chr3 198022430 + 12196530 12196571 5S 121 - 79 120 208028 41 chain 6651 chr3 198022430 + 12254347 12254800 L1M4c 1769 - 799 1269 180077 28 1 0 47 342 354 7 0 6 28 chain 9519 chr3 198022430 + 12279561 12279702 L1PB4 2604 + 2362 2497 162980 12 15 9 114 chain 972 chr3 198022430 + 12296805 12296926 MER30 238 - 0 117 139929 85 5 1 31 chain 48090 chr3 198022430 + 12297401 12298629 L1PB1 5432 - 10 1120 60408 18 1 0 10 8 7 17 1 0 20 28 24 26 3 0 19 1 0 42 0 3 13 7 6 49 2 0 5 10 6 11 1 0 8 1 0 24 120 338 71 0 2 51 305 0 31 0 8 7 31 7 287 chain 835 chr3 198022430 + 12298630 12298734 MER30 238 - 134 238 139929 104 chain 8813 chr3 198022430 + 12299982 12300157 MSTA 426 - 226 426 166590 52 60 85 63 chain 28510 chr3 198022430 + 12351957 12352261 AluYa5 310 - 6 310 91149 304 chain 3781 chr3 198022430 + 12354967 12355012 Tigger4a 237 - 189 234 210651 45 chain 100903 chr3 198022430 + 12428218 12429412 L1PA6 6164 - 3 1195 36536 8 6 0 650 2 1 180 0 4 325 0 1 23 chain 13893 chr3 198022430 + 12477242 12477443 MER107 203 + 2 202 144945 143 24 23 34 chain 7639 chr3 198022430 + 12552592 12552686 5S 121 - 1 95 173290 94 chain 14018 chr3 198022430 + 12592091 12592274 MER50 708 + 514 696 144511 23 6 1 6 0 4 148 chain 5334 chr3 198022430 + 12592414 12592476 MER4-int 2692 - 962 1024 191699 62 chain 11400 chr3 198022430 + 12648210 12648348 L1PA4 6152 - 0 143 154695 6 0 5 132 chain 19076 chr3 198022430 + 12652998 12653213 AluY 311 + 81 297 129890 51 0 1 164 chain 198941 chr3 198022430 + 12680539 12682877 L1PA5 6144 + 3784 6143 19281 17 0 1 28 1 15 26 12 13 602 0 4 448 0 1 355 1 0 55 0 3 40 0 3 118 0 1 515 19 11 90 1 3 10 chain 2992 chr3 198022430 + 12694099 12694147 Tigger2 2703 + 306 355 225212 34 2 0 5 0 3 7 chain 21064 chr3 198022430 + 12698987 12699279 AluSp 311 + 0 294 123676 26 1 0 180 1 3 26 10 8 31 1 4 16 chain 27996 chr3 198022430 + 12709527 12709826 AluY 311 + 10 310 93008 122 0 1 177 chain 22490 chr3 198022430 + 12714405 12714688 AluSc5 308 - 12 285 118064 165 10 0 108 chain 78906 chr3 198022430 + 12715613 12716581 LTR5_Hs 974 + 0 974 44105 418 2 1 30 1 7 94 1 0 106 0 1 119 7 7 48 0 1 142 chain 25134 chr3 198022430 + 12724753 12725081 AluY 311 + 0 302 104097 118 7 0 15 21 2 167 chain 3088 chr3 198022430 + 12731556 12731591 MLT1C 463 + 64 99 223132 35 chain 5841 chr3 198022430 + 12736993 12737059 L1PA8 5853 + 5765 5831 186759 66 chain 10435 chr3 198022430 + 12743318 12743453 LTR26B 539 - 337 528 158549 56 3 59 76 chain 18401 chr3 198022430 + 12754182 12754540 THE1B 368 - 0 368 131785 39 35 38 51 0 8 18 47 45 41 16 17 111 chain 25246 chr3 198022430 + 12804381 12804681 AluY 311 + 1 305 103493 51 1 5 48 1 0 27 0 1 172 chain 4518 chr3 198022430 + 12809937 12810026 LTR12C 1709 - 991 1039 189729 35 41 0 13 chain 14198 chr3 198022430 + 12810026 12810198 LTR12C 1709 - 601 773 143888 102 0 1 27 1 0 42 chain 82998 chr3 198022430 + 12812098 12813111 LTR13 1007 + 0 1007 42336 304 1 0 77 2 3 244 2 1 65 2 0 5 3 0 262 0 2 6 9 7 31 chain 32228 chr3 198022430 + 12823854 12824355 MER66D 528 - 0 528 80472 87 0 1 83 1 0 151 3 0 34 17 31 43 30 31 27 10 25 15 chain 5525 chr3 198022430 + 12836880 12836947 MER3 215 - 90 157 189788 67 chain 27623 chr3 198022430 + 12853889 12854183 AluYb8 318 - 5 299 94290 294 chain 4881 chr3 198022430 + 12864166 12864235 L1MC4 1079 - 968 1036 196463 38 6 5 25 chain 8005 chr3 198022430 + 12865657 12865742 L1PA6 6164 + 6076 6161 171018 85 chain 137186 chr3 198022430 + 12890535 12892062 SVA_D 2077 - 4 2067 26605 9 6 0 325 1 11 290 0 535 142 16 13 738 chain 24351 chr3 198022430 + 12894409 12894704 AluSp 311 + 11 307 108369 41 1 0 168 1 3 84 chain 5166 chr3 198022430 + 12906212 12906278 LTR10G 522 + 0 65 193389 40 1 0 25 chain 68362 chr3 198022430 + 12909325 12910228 LTR13_ 950 + 0 950 49099 68 0 4 103 0 3 92 1 3 64 50 90 172 1 0 53 2 0 102 2 1 100 0 2 93 chain 36617 chr3 198022430 + 12920178 12920652 LTR15 485 - 0 485 74073 52 5 1 55 0 5 32 0 1 15 6 9 34 0 4 39 0 1 133 0 1 103 chain 7196 chr3 198022430 + 12924815 12925041 LTR12C 1709 + 769 875 176098 58 130 10 38 chain 2760 chr3 198022430 + 12955484 12955545 MIR 256 - 128 205 229322 11 2 0 12 0 7 6 7 18 23 chain 4355 chr3 198022430 + 12958936 12958993 L1MC1 2226 - 193 248 202495 42 2 0 13 chain 5496 chr3 198022430 + 13015142 13015243 L1MA3 4352 + 4258 4352 190078 24 2 1 5 1 0 25 1 0 15 6 2 22 chain 29165 chr3 198022430 + 13026315 13026623 AluYk12 309 - 1 309 88229 308 chain 2753 chr3 198022430 + 13072485 13072536 MER113 458 - 109 158 229456 31 8 6 12 chain 3395 chr3 198022430 + 13089654 13089692 MIR 256 + 100 138 217168 38 chain 3894 chr3 198022430 + 13184130 13184176 MER58B 340 + 58 104 208961 46 chain 25911 chr3 198022430 + 13188932 13189652 L1PB3 3668 - 102 503 100367 37 3 1 14 1 0 8 7 5 19 20 4 86 2 1 5 300 0 96 1 0 43 0 3 58 1 2 19 chain 27256 chr3 198022430 + 13210585 13210929 THE1B 368 + 0 368 95414 40 0 15 117 1 0 137 0 10 49 chain 91997 chr3 198022430 + 13210929 13212088 THE1B-int 1605 + 0 1201 38971 25 3 0 5 6 12 387 2 27 170 1 0 374 2 17 184 chain 4370 chr3 198022430 + 13215274 13215351 MER5A 189 + 1 76 202316 10 2 0 9 0 2 5 7 5 44 chain 32151 chr3 198022430 + 13220303 13220749 LOR1b 457 + 0 457 80609 29 3 0 6 0 13 20 0 1 57 17 17 108 0 1 134 1 0 71 chain 116389 chr3 198022430 + 13221072 13222474 LTR12C 1709 + 0 1709 32316 338 0 43 83 2 0 5 2 0 146 0 1 34 0 278 184 1 0 5 3 1 106 11 4 399 1 0 82 chain 3175 chr3 198022430 + 13253586 13253623 MIRb 242 + 91 128 221419 37 chain 5969 chr3 198022430 + 13403926 13404026 MLT1A0 366 + 227 327 185529 16 1 0 35 12 13 36 chain 3706 chr3 198022430 + 13447064 13447121 MLT2B1 522 + 465 519 211874 9 3 0 45 chain 19559 chr3 198022430 + 13459964 13460270 AluSq2 311 + 10 266 128498 52 63 12 50 0 1 141 chain 44453 chr3 198022430 + 13471760 13472309 MER41A 554 - 0 554 63632 73 8 13 468 chain 14711 chr3 198022430 + 13473112 13475733 MER41A 554 - 228 554 142236 38 0 1 41 2394 97 55 0 1 93 chain 22835 chr3 198022430 + 13478926 13479210 AluSg7 307 - 15 299 116421 284 chain 33107 chr3 198022430 + 13484463 13484905 MLT2A1 477 - 0 477 79043 43 15 49 214 3 0 74 1 0 52 7 12 33 chain 134894 chr3 198022430 + 13487715 13489261 LTR12C 1709 - 0 1709 27034 481 0 4 107 3 1 5 1 0 222 0 162 727 chain 3185 chr3 198022430 + 13491477 13491513 AluY 311 + 83 119 221202 36 chain 4478 chr3 198022430 + 13495110 13495263 LTR38 553 + 16 168 201033 27 0 48 12 79 30 35 chain 37906 chr3 198022430 + 13497089 13497966 MER4A1_ 611 - 4 611 72279 9 1 0 205 5 52 59 1 3 155 354 31 67 0 5 21 chain 4296 chr3 198022430 + 13506535 13506644 MER53 195 + 24 132 203273 38 47 46 24 chain 24976 chr3 198022430 + 13540670 13540973 AluSp 311 - 13 311 104927 214 1 0 33 4 0 51 chain 118057 chr3 198022430 + 13644739 13646066 L1PA5 6144 - 0 1332 31782 250 0 1 617 1 5 459 chain 5756 chr3 198022430 + 13691249 13691346 L1MC1 2226 + 1955 2047 187583 25 3 0 12 6 4 51 chain 28674 chr3 198022430 + 13704328 13704651 L1PA5 6144 - 7 330 90431 323 chain 21617 chr3 198022430 + 13720313 13720561 AluY 311 + 37 285 121701 248 chain 15690 chr3 198022430 + 13733294 13733466 L1PA4 6152 - 16 188 139302 172 chain 532777 chr3 198022430 + 13771901 13778342 L1PA7 6471 - 7 6471 3879 5 3 0 272 0 1 49 0 1 345 0 1 169 1 0 8 0 1 61 0 1 108 4 5 175 2 1 261 9 10 421 1 0 83 0 1 154 0 1 195 0 1 132 2 0 423 3 0 5 0 3 74 1 0 11 4 2 170 0 1 653 1 0 139 0 2 933 0 1 58 0 1 514 4 22 86 4 0 8 3 7 76 0 10 391 7 0 224 2 1 187 chain 13814 chr3 198022430 + 13793950 13794102 L1PA5 6144 - 1 153 145197 152 chain 16807 chr3 198022430 + 13797780 13797965 L1PA4 6152 - 18 203 136096 185 chain 19126 chr3 198022430 + 13798878 13799196 L1PA15 4387 - 75 383 129755 42 6 3 50 5 4 11 4 0 17 2 1 54 1 0 26 1 0 4 13 14 82 chain 12883 chr3 198022430 + 13820663 13820861 MER30 238 - 0 212 148691 84 18 40 7 8 0 81 chain 3689 chr3 198022430 + 13851300 13851398 MER53 195 + 0 95 212103 35 43 40 20 chain 18591 chr3 198022430 + 13851711 13852149 L1PB1 5432 - 10 432 131255 15 12 11 4 1 0 22 1 0 20 53 57 13 1 0 44 6 5 10 2 1 41 13 11 9 2 0 3 2 0 12 1 0 6 1 0 23 5 0 7 11 10 98 chain 2694 chr3 198022430 + 13855194 13855363 MLT1H 522 + 111 282 230274 20 1 3 15 114 114 19 chain 5745 chr3 198022430 + 13912582 13912647 MLT1J 494 + 105 170 187688 65 chain 3229 chr3 198022430 + 13931503 13931537 MER5A 189 - 120 154 220435 34 chain 100481 chr3 198022430 + 13946893 13948294 L1PA11 4918 + 3178 4567 36635 116 0 1 417 3 4 203 24 25 95 1 2 272 0 4 10 2 0 4 0 1 24 0 1 34 4 3 13 3 0 67 2 0 14 1 0 20 53 41 5 1 0 13 chain 15785 chr3 198022430 + 13949455 13949621 AluYg6 310 - 0 166 139000 166 chain 258541 chr3 198022430 + 13952226 13956616 L1PB2 3958 + 108 3830 15778 32 2 0 35 9 5 7 0 4 36 1 0 4 2 0 172 0 3 131 1 0 120 3 4 138 0 1 237 0 7 81 7 6 76 37 0 31 6 12 95 6 10 16 330 0 204 0 4 11 1 0 95 0 4 89 5 6 23 1 0 138 2 1 333 22 26 149 1 0 16 7 23 55 2 1 110 7 8 256 4 3 25 0 1 210 0 2 31 10 16 59 0 5 9 1 4 21 2 0 19 20 0 32 3 1 13 3 0 65 31 19 123 312 0 36 1 0 8 1 0 7 1 0 5 0 1 35 7 6 33 0 1 36 2 0 26 1 0 10 1 0 45 chain 19436 chr3 198022430 + 13959243 13959590 L1PA16 3655 - 435 779 128524 14 9 8 39 9 7 25 3 4 4 1 0 27 6 0 22 7 12 49 0 3 20 0 1 63 1 0 19 2 0 27 chain 83718 chr3 198022430 + 13959590 13960506 L1PA3long 6157 + 5239 6156 42029 398 0 1 518 chain 39732 chr3 198022430 + 13962999 13963534 MLT2A2 560 + 9 560 69708 144 0 1 26 1 0 219 8 19 54 13 18 70 chain 27902 chr3 198022430 + 13965096 13965473 THE1C 375 + 0 375 93359 15 2 0 101 2 3 139 1 0 117 chain 54689 chr3 198022430 + 13970086 13970752 L1PA7 6471 + 5774 6452 55912 9 0 4 214 3 4 101 0 7 339 chain 402921 chr3 198022430 + 13983382 13989147 L1PB1 5432 - 8 5413 10000 4 1 0 16 1 0 9 1 4 21 1 0 24 2 0 14 8 5 17 15 7 7 3 0 15 1 0 44 2 1 15 2 1 48 5 3 11 16 11 9 1 0 22 316 0 11 1 2 50 2 1 5 0 1 121 0 10 100 0 2 7 26 10 170 2 0 321 1 0 349 7 6 218 13 6 284 9 12 27 0 1 337 1 13 439 4 8 226 0 4 98 0 3 135 1 0 4 0 1 156 0 2 101 3 1 173 2 3 208 4 5 12 15 6 49 32 8 15 1 0 435 11 9 195 1 0 104 10 11 232 1 2 6 1 0 4 0 3 102 0 2 5 2 0 229 7 8 29 chain 33930 chr3 198022430 + 13995192 13996021 MER41C 542 - 21 542 77728 117 24 29 48 2 0 3 1 0 8 8 9 70 325 13 174 0 1 49 chain 114681 chr3 198022430 + 13998722 14000000 L1PA5 6144 - 0 1283 32889 11 2 7 1265 chain 135077 chr3 198022430 + 14000518 14002051 L1P1 4361 - 20 1548 26999 12 2 1 23 1 0 155 1 0 974 1 0 258 1 0 105 chain 92046 chr3 198022430 + 14009009 14010024 L1PA3long 6157 - 0 1015 38960 1015 chain 81827 chr3 198022430 + 14010024 14010919 L1PA3long 6157 + 4271 5166 42514 895 chain 9182 chr3 198022430 + 14016761 14016875 L1PBa 3878 - 3215 3329 164648 114 chain 375996 chr3 198022430 + 14026649 14031213 L1PA7 6471 - 9 4602 10884 4 0 1 14 1 0 4 0 1 110 1 0 5 0 1 12 8 7 212 0 1 21 0 1 444 2 0 174 1 0 181 0 2 58 0 1 5 1 0 114 1 0 110 1 0 22 1 0 99 0 4 289 1 2 42 0 2 283 0 1 496 0 3 112 0 1 39 1 6 25 0 4 52 2 1 10 5 2 63 0 1 112 0 2 82 1 0 417 0 4 281 0 2 349 0 5 58 0 1 238 chain 541139 chr3 198022430 + 14031227 14037360 L1PA4 6152 - 13 6151 2642 5 1 0 95 1 2 119 8 12 93 0 1 1355 1 4 105 0 4 813 0 1 365 0 1 106 0 1 2015 16 2 424 0 4 611 chain 148528 chr3 198022430 + 14037360 14039249 L1P3 4156 - 2273 4156 24814 415 10 14 101 0 1 69 0 1 4 1 0 4 2 0 354 0 3 5 2 1 232 4 5 269 10 0 83 3 2 69 1 0 42 1 0 4 0 1 204 chain 380030 chr3 198022430 + 14052655 14058395 L1PB1 5432 - 2 5420 10754 4 1 0 4 1 0 4 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 7 4 19 27 14 13 1 0 37 27 25 23 1 6 23 2 0 8 5 1 11 1 0 13 1 0 20 1 0 7 5 4 84 9 13 202 1 0 84 0 1 5 1 0 86 6 0 19 6 10 80 1 6 7 0 1 112 0 36 26 311 5 429 1 6 69 10 12 75 26 0 585 1 0 11 1 2 72 2 1 71 0 4 154 3 0 125 1 2 12 14 7 43 22 7 368 0 3 128 8 11 50 10 5 207 3 4 68 0 1 86 31 44 16 6 12 82 7 11 134 0 5 94 35 9 55 22 30 73 24 22 275 7 11 66 8 7 217 4 3 175 0 2 6 6 4 101 0 1 34 6 4 81 0 2 113 1 0 7 chain 34094 chr3 198022430 + 14065813 14066269 MER4A1 472 - 17 472 77482 202 28 27 226 chain 194732 chr3 198022430 + 14066291 14068930 MER4-int 2692 - 14 2691 19600 121 0 1 75 0 3 200 16 17 101 26 30 56 2 0 54 0 2 91 1 2 33 0 2 126 0 1 310 8 16 248 6 8 62 1 3 209 1 0 111 1 14 162 1 0 4 5 7 31 12 14 266 0 1 18 0 5 154 5 2 19 2 0 37 27 25 26 1 0 10 chain 135793 chr3 198022430 + 14069820 14071556 LTR12C 1709 - 0 1709 26880 333 0 2 146 0 4 106 3 1 5 1 0 52 52 56 128 28 32 7 1 0 134 41 0 237 0 1 375 0 3 87 chain 4469 chr3 198022430 + 14070466 14070518 LTR12C 1709 - 731 783 141726 52 chain 2056 chr3 198022430 + 14070646 14070674 LTR12C 1709 - 914 942 168218 28 chain 3111 chr3 198022430 + 14070816 14070857 LTR12C 1709 - 847 887 100879 25 1 0 15 chain 37645 chr3 198022430 + 14074447 14074919 MER4A1 472 - 0 472 72630 472 chain 3222 chr3 198022430 + 14079276 14079316 LTR12C 1709 + 1119 1159 220546 40 chain 225268 chr3 198022430 + 14095669 14100137 L1PBa1 4058 - 956 4045 17573 309 0 3 131 0 6 182 18 10 151 0 4 6 0 4 127 3 0 92 1367 0 149 28 29 215 14 0 22 1 0 44 6 2 20 5 2 64 1 2 75 1 0 151 1 0 35 3 21 182 0 1 80 17 18 228 1 0 82 1 0 30 8 7 50 1 0 9 14 13 94 2 1 13 13 14 84 2 1 82 1 0 201 1 0 7 22 14 22 chain 72706 chr3 198022430 + 14096722 14097540 L1PA4 6152 - 0 815 47164 6 3 0 809 chain 10302 chr3 198022430 + 14097540 14097677 L1P1 4361 + 4204 4341 159122 76 0 2 23 1 0 23 2 1 12 chain 12550 chr3 198022430 + 14101297 14101442 L1PA4 6152 + 6008 6151 150041 138 2 0 5 chain 546917 chr3 198022430 + 14111601 14117728 L1PA4 6152 + 4 6143 1840 1168 0 4 60 0 1 1529 0 1 397 0 1 513 0 2 277 0 2 1566 0 1 617 chain 31687 chr3 198022430 + 14121869 14122285 MER57A1 433 - 0 433 81344 149 12 24 84 0 5 171 chain 75843 chr3 198022430 + 14132684 14133652 LTR5_Hs 974 - 0 974 45576 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 45713 chr3 198022430 + 14162296 14162857 LTR19B 566 - 0 566 62306 15 0 4 33 3 0 15 0 5 198 5 4 292 chain 27979 chr3 198022430 + 14225972 14226270 AluYa5 310 + 0 295 93075 97 3 0 198 chain 450383 chr3 198022430 + 14230309 14235905 L1PA7 6471 - 2 5724 8755 115 0 4 626 0 1 107 0 2 104 0 2 491 4 7 25 0 1 306 16 20 137 1 3 99 0 2 246 0 4 380 0 1 238 0 4 6 5 4 33 1 0 4 3 2 74 0 1 698 0 3 78 0 2 118 0 2 34 1 0 721 0 1 421 2 1 44 60 69 47 20 34 135 15 19 117 0 65 64 chain 35899 chr3 198022430 + 14266557 14266996 LTR3A 482 + 0 449 75017 156 7 16 270 0 1 6 chain 16569 chr3 198022430 + 14267180 14267685 HERVK3-int 3053 + 131 566 136737 5 1 0 13 14 0 45 108 73 9 2 0 9 9 5 4 0 1 74 1 0 9 42 37 21 23 16 25 16 14 75 chain 35468 chr3 198022430 + 14271298 14271755 LTR3A 482 + 0 475 75598 19 10 19 119 6 15 303 chain 14290 chr3 198022430 + 14292273 14292475 MER107 203 - 17 197 143592 18 23 1 161 chain 31133 chr3 198022430 + 14313853 14314291 LTR7 482 - 17 482 82280 31 13 15 100 27 12 27 1 31 38 1 11 200 chain 71646 chr3 198022430 + 14314344 14315311 LTR5_Hs 974 + 0 974 47628 19 0 2 438 0 4 168 8 7 21 0 1 14 3 5 23 2 0 35 8 0 10 7 15 14 7 7 34 18 19 138 chain 4004 chr3 198022430 + 14316688 14316736 MIRb 242 + 68 116 207321 48 chain 133584 chr3 198022430 + 14334538 14336214 LTR12C 1709 + 0 1709 27304 131 0 15 26 1 0 117 10 6 41 5 48 48 2 0 94 1 0 258 5 0 53 1 0 72 0 1 202 1 0 5 3 1 100 1 0 6 11 4 211 0 1 121 1 0 44 21 20 84 chain 3195 chr3 198022430 + 14405965 14406049 MIRb 242 + 98 183 221014 32 36 37 16 chain 6814 chr3 198022430 + 14436175 14436259 5S 121 + 38 121 178842 9 1 0 74 chain 22385 chr3 198022430 + 14491270 14491546 AluSc5 308 - 21 297 118562 133 4 7 6 3 0 130 chain 4238 chr3 198022430 + 14577047 14577133 MIR 256 - 70 161 204042 16 29 34 41 chain 4240 chr3 198022430 + 14584342 14584389 MIR 256 - 143 190 204009 47 chain 27495 chr3 198022430 + 14613838 14614139 AluYa5 310 + 0 302 94665 50 2 3 249 chain 6483 chr3 198022430 + 14679954 14680156 L1MB7 1623 - 341 505 181370 14 7 3 17 95 61 69 chain 9408 chr3 198022430 + 14683747 14684045 MLT1A1 405 + 59 403 163518 29 140 178 15 5 14 35 3 2 71 chain 49807 chr3 198022430 + 14739064 14739649 L1PA6 6164 - 3 581 59151 158 8 1 419 chain 25180 chr3 198022430 + 14743577 14743906 THE1A 353 - 20 353 103847 54 0 1 54 9 12 212 chain 29661 chr3 198022430 + 14744247 14744610 THE1A-int 1579 - 26 400 86024 76 0 7 186 4 8 97 chain 2784 chr3 198022430 + 14755158 14755193 MER81 114 - 0 34 228943 14 1 0 20 chain 27054 chr3 198022430 + 14784158 14784511 THE1A 353 - 0 351 96098 243 9 8 17 1 0 83 chain 125735 chr3 198022430 + 14784513 14786074 THE1A-int 1579 - 0 1579 29177 110 0 2 183 0 1 4 0 3 151 7 13 226 0 3 245 6 8 179 0 1 264 17 17 169 chain 25141 chr3 198022430 + 14786074 14786427 THE1A 353 - 0 353 104062 51 1 0 6 3 5 181 9 8 17 1 0 40 0 1 44 chain 172368 chr3 198022430 + 14792995 14794999 L1PA6 6164 + 4160 6159 21775 875 1 0 39 4 0 1085 chain 33354 chr3 198022430 + 14926276 14926694 LTR3A 482 + 0 448 78642 161 0 9 25 0 14 134 0 7 98 chain 27971 chr3 198022430 + 14926694 14927049 LTR3A 482 - 104 482 92543 169 0 14 23 6 15 157 chain 30637 chr3 198022430 + 14944885 14945224 L1PA3long 6157 - 23 362 83144 339 chain 3149 chr3 198022430 + 14946559 14946595 L1MC3 1789 - 909 945 221934 36 chain 6628 chr3 198022430 + 14949999 14950109 Ricksha_b 1102 - 18 122 180253 58 8 0 6 1 0 4 0 1 14 0 3 13 1 0 5 chain 10942 chr3 198022430 + 14980138 14980348 Tigger4a 237 - 14 236 156435 21 4 14 8 7 0 27 1 2 6 1 0 29 2 9 67 0 15 10 13 0 14 chain 77468 chr3 198022430 + 14986650 14987797 HSMAR1 1287 - 75 1277 44751 53 0 2 71 13 20 329 1 0 61 0 10 54 0 3 39 6 9 71 9 0 36 21 37 40 10 11 20 4 7 124 8 7 25 17 20 13 0 4 21 0 2 28 0 11 59 0 1 14 chain 128491 chr3 198022430 + 15009237 15010652 L1PA3long 6157 + 4738 6156 28457 566 0 4 664 1 0 184 chain 24897 chr3 198022430 + 15025383 15025684 AluSp 311 - 9 301 105363 7 9 0 285 chain 7032 chr3 198022430 + 15042657 15042811 L1MB7 1623 - 1418 1568 177240 45 51 47 58 chain 11900 chr3 198022430 + 15060787 15061192 L1MA6 2487 + 2045 2393 152598 21 1 0 7 2 0 96 227 171 39 0 2 12 chain 155607 chr3 198022430 + 15102696 15104572 SVA_D 2077 + 0 2077 23910 10 1 7 40 0 2 483 0 80 156 40 0 142 1 0 24 15 57 20 0 51 50 1 0 25 1 2 33 2 0 27 1 0 51 1 0 15 1 0 43 0 48 22 0 1 56 1 0 478 0 20 116 2 0 18 chain 3020 chr3 198022430 + 15120729 15120761 MER58A 224 - 134 166 224625 32 chain 4336 chr3 198022430 + 15175960 15176011 MADE1 96 + 45 96 202762 51 chain 74897 chr3 198022430 + 15187035 15187933 LTR5A 1029 - 0 906 46063 60 2 4 14 0 6 767 0 1 27 1 0 27 chain 174898 chr3 198022430 + 15203543 15205679 SVA_D 2077 - 4 2073 21474 663 18 17 4 0 1 56 1 0 11 0 1 5 1 51 13 5 1 212 0 2 89 4 0 8 84 0 20 2 1 15 2 0 71 40 0 793 0 17 12 1 0 6 chain 6986 chr3 198022430 + 15204633 15204717 SVA_D 2077 - 739 823 109197 84 chain 2354 chr3 198022430 + 15204827 15204867 SVA_D 2077 - 1478 1518 152667 40 chain 51873 chr3 198022430 + 15207751 15208372 L1PA8A 6298 + 5671 6291 57699 520 1 0 100 chain 548564 chr3 198022430 + 15228174 15234206 L1PA3long 6157 + 0 6157 1634 118 0 1 32 1 2 623 0 128 2992 0 2 1092 8 1 1166 chain 240639 chr3 198022430 + 15234344 15237239 L1PA7 6471 + 3546 6460 16735 116 0 1 316 0 1 107 0 5 189 11 14 383 1 3 402 0 1 539 0 5 70 0 1 37 0 1 399 0 1 299 2 0 24 chain 199400 chr3 198022430 + 15239194 15241797 Charlie3 2679 - 5 2657 19252 53 20 24 89 0 1 218 8 10 101 0 4 416 1 5 178 0 3 171 6 7 454 9 10 196 0 3 65 0 1 75 0 2 33 25 43 161 0 4 32 0 2 273 7 6 12 chain 3252 chr3 198022430 + 15263735 15263770 MER66B 489 + 295 330 219977 35 chain 21561 chr3 198022430 + 15275560 15275828 AluSp 311 + 20 287 121919 62 1 0 205 chain 29924 chr3 198022430 + 15289366 15289689 L1PA2 6032 + 5703 6026 85029 323 chain 13757 chr3 198022430 + 15315427 15315935 MSTA 426 - 2 184 145413 28 326 0 154 chain 11990 chr3 198022430 + 15340089 15340269 L1MB3 1562 + 1202 1399 152245 33 7 30 87 1 0 10 5 0 37 chain 3917 chr3 198022430 + 15355017 15355060 MADE1 96 + 53 96 208590 43 chain 5788 chr3 198022430 + 15381255 15381321 U6 107 + 0 66 187272 66 chain 3162 chr3 198022430 + 15386506 15386541 MADE2 80 + 45 80 221704 35 chain 5299 chr3 198022430 + 15411342 15411406 MER63A 208 + 87 151 192027 64 chain 8157 chr3 198022430 + 15426702 15426821 LTR23 429 + 154 297 170184 48 5 6 20 0 24 28 1 0 17 chain 11904 chr3 198022430 + 15428604 15428764 MER50 708 - 522 688 152581 127 7 13 26 chain 18817 chr3 198022430 + 15428784 15429022 MER41B 635 - 385 635 130628 123 1 2 91 0 11 23 chain 11399 chr3 198022430 + 15429430 15429575 LTR8 732 - 0 147 154701 11 0 1 84 0 1 50 chain 538138 chr3 198022430 + 15433014 15439121 L1PA4 6152 - 2 6133 3126 30 5 11 805 0 3 835 0 1 1627 2 0 277 0 1 642 0 5 494 0 5 465 1 5 206 3 4 172 0 1 343 1 0 199 chain 8280 chr3 198022430 + 15474616 15474716 U6 107 - 0 100 169510 100 chain 11683 chr3 198022430 + 15475278 15475438 Tigger3d 321 + 38 196 153552 4 1 0 132 1 0 5 0 1 12 1 0 4 chain 3209 chr3 198022430 + 15485219 15485286 MLT1H 522 - 434 500 220753 13 11 12 29 2 0 12 chain 25156 chr3 198022430 + 15490387 15490727 THE1B 368 + 0 356 103980 44 0 15 115 1 0 18 12 0 40 0 15 46 1 0 63 chain 5749 chr3 198022430 + 15501320 15501381 L1PA3long 6157 - 15 76 187649 61 chain 451813 chr3 198022430 + 15521688 15526933 L1PA5 6144 - 0 5530 8705 11 3 1 694 0 3 192 24 0 268 10 0 692 0 1 175 0 4 933 1 0 12 1 0 837 9 8 118 0 2 40 0 1 200 0 296 436 0 1 5 0 25 19 9 0 556 chain 3547 chr3 198022430 + 15549498 15549535 tRNA-Gly-GGG 71 + 0 37 214603 37 chain 8083 chr3 198022430 + 15555100 15555220 LTR16C 481 + 353 481 170584 36 5 15 59 2 0 18 chain 3972 chr3 198022430 + 15558833 15558883 MIRc 230 + 74 124 207799 50 chain 103766 chr3 198022430 + 15586454 15588688 L1MA3 4352 - 657 4319 35780 64 0 1 137 8 12 84 0 3 15 1 0 32 5 24 50 0 7 88 662 2036 32 1 0 81 1 2 7 1 0 92 1 3 49 1 0 7 9 7 89 12 10 64 0 4 139 0 6 50 18 22 102 0 2 65 3 0 82 0 21 31 0 3 11 25 15 53 9 8 48 1 0 4 chain 27288 chr3 198022430 + 15590575 15590925 THE1A 353 + 0 353 95314 109 2 1 27 0 4 93 2 1 19 0 1 98 chain 124046 chr3 198022430 + 15590925 15592491 THE1A-int 1579 + 0 1573 29687 632 9 8 206 2 0 431 7 8 128 0 13 17 4 0 75 0 1 34 1 0 20 chain 16054 chr3 198022430 + 15644703 15644882 THE1B-int 1605 - 5 184 138206 179 chain 15434 chr3 198022430 + 15648341 15648578 MER30 238 + 2 238 140094 14 2 20 67 12 0 8 7 5 5 2 0 77 3 0 40 chain 24843 chr3 198022430 + 15649998 15650292 AluSc5 308 + 6 300 105664 294 chain 72055 chr3 198022430 + 15661233 15662304 MER11A 1151 - 8 1145 47456 28 0 4 123 6 7 60 0 1 37 18 0 21 6 13 13 25 1 145 5 7 40 5 17 10 18 6 71 0 1 94 4 5 145 4 0 60 0 4 52 8 0 24 0 99 49 chain 40671 chr3 198022430 + 15697629 15698152 LTR10G 522 + 0 522 68336 77 1 0 39 2 1 127 0 1 108 1 0 96 0 2 61 1 0 10 chain 3991 chr3 198022430 + 15702304 15702350 L1MC1 2226 - 179 225 207507 46 chain 12921 chr3 198022430 + 15738358 15738534 L1PB2 3958 + 3619 3791 148554 60 1 0 74 2 0 22 1 0 16 chain 51189 chr3 198022430 + 15739022 15739646 L1PA6 6164 - 2264 2920 58196 197 1 21 156 1 0 218 3 14 13 0 2 35 chain 193476 chr3 198022430 + 15739649 15741973 L1PA6 6164 + 3905 6162 19739 1143 1 0 248 0 4 18 0 4 624 62 0 58 0 1 46 9 0 96 1 0 7 3 0 8 chain 73948 chr3 198022430 + 15747601 15748448 L1PA5 6144 - 0 850 46541 21 0 2 264 0 1 562 chain 3382 chr3 198022430 + 15770101 15770146 Tigger1 2417 + 2298 2341 217441 38 2 0 5 chain 79159 chr3 198022430 + 15779665 15780942 MER11B 1079 - 0 1079 43975 4 0 1 15 18 17 83 1 2 16 4 25 144 3 6 68 241 0 120 1 0 31 6 5 4 0 1 203 0 17 139 1 3 175 chain 137632 chr3 198022430 + 15783307 15784862 SVA_D 2077 + 98 2062 26539 818 6 396 49 2 1 26 0 1 4 0 1 4 8 6 519 0 20 119 chain 218971 chr3 198022430 + 15787599 15790567 L1PBa 3878 - 85 3062 17947 16 2 0 5 1 0 11 19 13 11 2 0 21 2 1 349 4 0 138 5 10 64 0 10 109 2 1 233 0 5 78 2 4 10 4 0 309 0 2 333 1 5 137 2 1 103 0 1 21 3 4 170 8 0 9 3 11 131 0 2 21 4 3 101 1 0 10 0 1 339 11 10 65 15 19 75 3 0 5 chain 29564 chr3 198022430 + 15790602 15790918 AluYb8 318 - 4 318 86363 196 2 0 118 chain 19819 chr3 198022430 + 15809097 15809388 AluY 311 + 11 276 127753 41 3 0 71 0 3 7 35 9 134 chain 129439 chr3 198022430 + 15831333 15833446 L1MA1 4479 + 2105 4189 28216 14 14 21 38 1 0 8 0 4 37 58 25 21 2 0 245 0 3 27 1 4 50 1 0 62 6 4 75 48 50 11 1 0 30 3 0 32 1 0 92 6 5 13 8 9 163 11 9 5 0 3 86 1 0 11 5 1 126 3 0 26 1 0 25 2 12 67 0 1 195 1 0 24 2 0 16 1 0 10 0 1 8 1 0 27 0 1 7 18 17 19 2 0 14 1 0 23 14 29 35 1 0 5 7 4 123 1 0 29 2 0 29 30 28 8 6 0 17 chain 30680 chr3 198022430 + 15874590 15874989 MLT2A1 477 + 0 395 83072 171 3 0 205 0 3 6 4 0 10 chain 10392 chr3 198022430 + 15875199 15875324 MER85 139 - 0 139 158733 25 0 14 100 chain 49592 chr3 198022430 + 15882666 15883494 L1MA2 4263 + 3228 3963 59326 96 1 0 4 0 1 15 4 5 152 85 0 71 1 0 10 10 4 74 17 16 30 0 7 96 3 0 62 10 4 36 0 1 4 0 1 40 1 0 6 chain 11072 chr3 198022430 + 15887165 15887529 THE1D 372 - 1 372 155924 90 0 1 4 46 39 16 156 169 52 chain 36495 chr3 198022430 + 15887529 15887978 THE1D-int 1627 - 0 450 74245 237 0 1 212 chain 4314 chr3 198022430 + 15905133 15905188 HSMAR2 1300 - 1238 1294 203045 22 0 1 33 chain 541829 chr3 198022430 + 15948755 15954885 L1PA4 6152 - 0 6152 2536 157 0 7 147 0 1 1374 0 1 113 0 4 665 0 1 249 1 0 141 0 1 1349 1 0 96 0 1 1266 0 4 329 0 4 31 6 7 4 1 0 200 chain 23924 chr3 198022430 + 15957244 15957533 AluY 311 + 6 289 110783 167 9 3 113 chain 8854 chr3 198022430 + 15973291 15973526 LTR56 451 - 188 438 166355 69 114 129 52 chain 72651 chr3 198022430 + 15982560 15983415 LTR12 884 - 0 884 47192 110 0 4 370 0 22 37 0 1 202 0 2 136 chain 27902 chr3 198022430 + 15987503 15987947 Tigger1 2417 + 1967 2370 93362 158 1 0 44 0 2 38 1 0 30 10 12 37 50 7 75 chain 24571 chr3 198022430 + 15988443 15988778 THE1C 375 + 0 336 107133 125 9 6 53 16 20 132 chain 4087 chr3 198022430 + 15993830 15993880 LTR24C 604 + 552 602 206124 50 chain 11938 chr3 198022430 + 15996876 15997022 MSTD 398 - 252 398 152450 146 chain 70903 chr3 198022430 + 16002985 16004136 L1PB1 5432 - 10 1190 47964 18 1 0 12 1 0 22 1 0 15 69 53 6 2 0 15 2 1 40 22 20 52 3 1 8 2 0 3 2 0 12 3 2 4 1 0 22 20 18 285 9 9 26 24 88 60 4 0 135 5 8 245 chain 135591 chr3 198022430 + 16012366 16014110 L1PB1 5432 + 3343 5100 26911 389 1 0 21 3 1 358 0 1 88 0 3 65 4 3 236 10 17 82 1 5 16 3 0 52 0 3 118 4 6 293 chain 3886 chr3 198022430 + 16017770 16017814 MER53 195 - 0 44 209079 44 chain 28532 chr3 198022430 + 16026387 16026842 L1P4 1494 - 948 1402 91038 146 9 11 24 27 32 69 19 14 105 1 0 20 2 1 24 1 0 8 chain 122214 chr3 198022430 + 16028977 16030534 THE1B-int 1605 - 14 1605 30307 500 7 8 291 1 0 335 0 25 138 0 1 21 1 3 28 34 38 167 0 2 34 chain 27140 chr3 198022430 + 16030534 16030898 THE1B 368 - 0 368 95792 47 0 10 5 2 0 97 1 0 36 2 1 157 2 0 15 chain 58197 chr3 198022430 + 16037602 16038233 SVA_B 1603 - 0 709 53865 601 0 78 30 chain 40741 chr3 198022430 + 16041648 16042120 LTR7Y 441 + 0 441 68259 165 31 0 276 chain 42284 chr3 198022430 + 16056992 16057550 LTR10F 562 - 0 562 66292 56 1 2 226 2 0 13 22 1 10 0 24 142 0 2 86 chain 164104 chr3 198022430 + 16059817 16063046 HERVIP10F-int 4088 - 805 3837 22797 6 1 0 15 50 42 18 1 0 7 166 129 44 49 46 118 0 1 390 7 19 123 1 0 18 1 0 18 0 1 52 1 0 78 9 8 65 1 0 15 7 3 4 1 0 142 6 7 245 0 1 4 25 21 32 1 0 60 2 1 19 8 6 63 1 0 15 16 15 23 7 5 12 1 0 14 44 32 93 11 12 32 1 0 41 1 0 14 1 0 23 7 4 24 21 16 13 1 0 8 1 0 11 2 0 41 1 0 30 1 0 7 12 8 18 42 31 12 1 0 11 1 0 26 1 0 5 1 0 59 1 0 8 1 0 32 3 1 5 1 0 45 1 0 8 7 5 23 1 0 10 1 0 12 1 0 17 35 32 8 1 0 33 1 0 31 1 0 18 139 115 20 2 0 7 82 50 9 11 0 12 1 0 20 1 0 12 3 1 7 3 0 15 chain 36092 chr3 198022430 + 16065256 16065741 LTR10F 562 - 18 562 74772 43 0 1 227 2 0 7 21 0 13 0 80 65 0 1 107 chain 21825 chr3 198022430 + 16113498 16113876 THE1D 372 - 2 372 120921 33 2 1 96 3 9 38 26 27 27 0 4 60 33 14 43 0 1 17 chain 65211 chr3 198022430 + 16118646 16119427 LTR12 884 + 0 869 50467 25 1 0 228 0 91 33 2 0 492 chain 91301 chr3 198022430 + 16122711 16124021 THE1B-int 1605 - 0 1605 39195 257 4 5 44 9 6 105 0 271 61 3 18 261 14 15 50 9 8 23 0 1 7 4 5 17 38 21 16 0 1 25 8 7 187 0 12 143 0 14 25 chain 25341 chr3 198022430 + 16137853 16138517 THE1A 353 + 0 343 103012 70 0 1 39 1 0 61 1 2 52 322 0 118 chain 28111 chr3 198022430 + 16139461 16139827 THE1B 368 + 0 368 92601 15 2 0 25 0 5 123 6 5 195 chain 42511 chr3 198022430 + 16142848 16143396 LTR10F 562 - 29 562 66000 33 3 2 248 18 1 13 0 3 233 chain 14157 chr3 198022430 + 16148341 16148574 THE1C 375 - 11 261 144018 122 45 56 5 0 2 40 0 4 21 chain 21640 chr3 198022430 + 16160444 16160697 AluY 311 + 52 307 121614 228 0 2 25 chain 27434 chr3 198022430 + 16191195 16191481 AluYd8 298 - 12 298 94868 286 chain 516081 chr3 198022430 + 16200383 16206497 L1PA6 6164 - 2 6164 5565 110 1 0 1401 1 29 256 0 4 180 1 2 990 0 1 1231 1 0 37 1 0 475 1 0 10 8 13 459 0 25 79 1 0 7 0 2 105 5 6 230 2 1 313 0 1 76 21 7 112 chain 26502 chr3 198022430 + 16210940 16211290 THE1B 368 + 0 356 98035 173 1 0 10 0 1 13 2 0 109 5 13 37 chain 6772 chr3 198022430 + 16224209 16224291 MER5A1 166 + 15 97 179167 82 chain 9506 chr3 198022430 + 16257674 16257788 MER50 708 - 25 139 163039 114 chain 19459 chr3 198022430 + 16267870 16268230 MSTA 426 - 21 426 128789 35 2 0 53 5 25 36 24 20 7 0 7 8 4 0 8 4 0 31 0 1 15 29 60 99 chain 30241 chr3 198022430 + 16272421 16272829 L1PA8 5853 + 5465 5853 84083 99 1 0 46 2 0 66 0 1 10 9 1 52 2 1 19 10 1 92 chain 5351 chr3 198022430 + 16282987 16283050 MLT1H1 527 - 0 63 191532 63 chain 26039 chr3 198022430 + 16287828 16288128 AluSc 308 - 6 308 99860 195 0 2 105 chain 8333 chr3 198022430 + 16365853 16366153 L1MA7 2200 - 128 398 169207 22 11 0 9 1 5 35 37 20 4 1 0 23 6 5 15 22 24 35 55 49 24 chain 15903 chr3 198022430 + 16395139 16395468 MLT1A 405 + 67 405 138642 19 8 7 24 23 21 33 41 53 63 5 4 42 1 0 25 0 5 5 3 0 37 chain 4613 chr3 198022430 + 16426209 16426349 MER3 215 + 47 193 199474 15 0 1 27 0 74 11 69 0 18 chain 8649 chr3 198022430 + 16575957 16576067 L1MB3 1562 - 671 781 167473 110 chain 19134 chr3 198022430 + 16587422 16587670 L1PA6 6164 + 5910 6162 129725 92 16 17 80 0 3 60 chain 41884 chr3 198022430 + 16601266 16601815 MLT2A2 560 + 0 560 66783 93 0 1 87 1 0 122 8 7 86 6 17 80 0 1 66 chain 5741 chr3 198022430 + 16651187 16651301 MER5A1 166 + 0 125 187727 19 38 49 57 chain 34863 chr3 198022430 + 16664923 16665458 L1MA3 4352 + 2086 2578 76391 162 1 8 57 1 0 23 51 7 169 5 0 66 chain 18249 chr3 198022430 + 16683198 16683563 THE1D 372 + 0 372 132206 15 0 2 35 34 26 88 76 89 117 chain 14312 chr3 198022430 + 16700806 16700987 MER39 703 - 54 236 143518 109 0 1 72 chain 22009 chr3 198022430 + 16702736 16703070 L1PA17 2846 + 2365 2693 120192 170 1 0 39 32 29 33 1 0 13 1 0 44 chain 5075 chr3 198022430 + 16709229 16709361 MER5A 189 + 12 154 194349 15 0 1 34 57 66 26 chain 7753 chr3 198022430 + 16711796 16712109 MER77B 728 + 18 314 172589 12 39 14 31 0 1 29 1 0 39 54 71 12 14 0 8 4 0 7 46 55 17 chain 31653 chr3 198022430 + 16712138 16712591 MER4A1 472 + 0 472 81400 131 4 0 41 1 0 47 14 36 16 0 5 6 11 6 154 0 2 28 chain 41234 chr3 198022430 + 16716133 16718110 MER4-int 2692 + 1 2017 20613 9 0 2 24 2 0 12 69 72 409 4 5 99 0 5 58 0 2 22 11 17 117 6 7 32 0 1 25 1 2 48 0 7 32 0 2 89 0 10 175 1 0 26 1 0 7 0 1 140 2 0 85 2 1 209 0 1 4 1 0 50 11 13 69 0 2 125 chain 544416 chr3 198022430 + 16718129 16724257 L1PA4 6152 + 8 6151 2155 572 1 0 118 7 0 837 0 12 377 0 8 1163 0 2 2897 0 1 156 chain 13953 chr3 198022430 + 16724270 16724939 MER4-int 2692 + 2017 2691 20613 245 23 26 116 0 1 275 0 1 10 chain 33476 chr3 198022430 + 16727398 16727881 L1PA8 5853 - 5 493 78447 4 0 1 48 10 4 30 7 6 14 2 1 61 1 17 54 2 0 44 1 0 161 1 0 43 chain 32812 chr3 198022430 + 16750624 16751065 L1PA8 5853 - 0 461 79511 13 0 1 52 0 25 21 2 1 43 6 5 13 2 1 70 2 0 44 1 0 172 chain 53387 chr3 198022430 + 16772006 16772623 L1PA7 6471 - 1 615 56768 4 1 0 7 2 0 603 chain 471666 chr3 198022430 + 16772632 16778359 L1PA8 5853 + 124 5853 7979 177 5 9 124 4 8 6 0 7 145 0 8 672 0 3 439 5 25 271 7 0 777 0 1 38 0 4 382 45 2 894 0 1 226 0 3 609 0 1 53 0 2 71 0 2 480 1 0 46 3 0 68 2 1 14 1 0 47 2 1 19 1 0 93 chain 34569 chr3 198022430 + 16785692 16786187 LTR7 482 + 0 482 76794 136 51 0 88 0 1 33 0 1 6 0 31 9 0 1 78 1 3 32 12 14 49 chain 291041 chr3 198022430 + 16786189 16789861 HERVH-int 3825 + 0 3825 13956 108 0 1 224 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 32 60 4 1 0 42 89 1 15 21 0 29 12 13 7 0 2 13 0 3 445 15 0 459 4 31 284 0 4 261 5 6 30 0 1 580 1 2 74 1 0 112 9 11 39 8 218 260 0 2 225 chain 35905 chr3 198022430 + 16791125 16791571 LTR7 482 + 0 482 75007 224 0 1 33 0 32 17 1 2 110 12 14 49 chain 144995 chr3 198022430 + 16795520 16797954 L1MA2 4263 - 747 2804 25327 73 13 9 277 429 22 100 12 13 244 8 6 126 5 3 86 0 4 190 10 4 110 4 5 134 1 12 47 15 16 302 1 0 4 1 2 184 5 1 6 0 4 16 0 26 31 chain 129567 chr3 198022430 + 16815041 16816592 LTR12C 1709 + 0 1709 28186 266 0 1 10 4 0 9 0 4 409 0 159 229 3 0 25 9 6 26 0 1 79 0 4 381 1 0 100 chain 325647 chr3 198022430 + 16819458 16823498 L1PA5 6144 + 2405 6144 12362 419 311 0 377 0 1 307 0 1 1359 1 0 8 1 0 4 0 1 149 0 1 239 1 5 115 1 4 220 0 1 528 chain 8653 chr3 198022430 + 16832106 16832219 THE1D 372 + 260 372 167459 79 2 1 32 chain 6671 chr3 198022430 + 16833586 16833745 MER39 703 + 0 168 179898 33 5 6 52 1 12 8 2 0 6 16 0 9 14 29 13 chain 2715 chr3 198022430 + 16839045 16839076 LTR16C 481 - 40 71 229955 31 chain 31602 chr3 198022430 + 16845610 16846037 MLT2A1 477 + 0 477 81484 87 2 0 82 6 14 105 3 2 94 0 1 8 3 47 37 chain 17323 chr3 198022430 + 16856093 16856420 L1MC1 2226 - 181 505 134725 51 2 0 14 18 21 45 1 0 27 7 0 22 19 23 83 20 21 12 1 0 5 chain 5165 chr3 198022430 + 16882913 16882978 MER44B 551 - 433 498 193402 65 chain 4669 chr3 198022430 + 16886142 16886201 MER3 215 - 22 93 198877 27 0 12 32 chain 29320 chr3 198022430 + 16946136 16946512 THE1C 375 + 0 375 87437 180 18 17 178 chain 5570 chr3 198022430 + 16967201 16967347 L1MB7 1623 - 132 258 189371 13 1 0 26 51 33 44 1 0 10 chain 6667 chr3 198022430 + 16993588 16993658 L1PA8 5853 + 5608 5678 179930 70 chain 5948 chr3 198022430 + 16993660 16993743 L1PA8 5853 + 5679 5760 185696 10 1 0 50 4 3 18 chain 7655 chr3 198022430 + 16993745 16993856 L1PA8 5853 + 5761 5853 173189 31 19 0 61 chain 371369 chr3 198022430 + 16995520 16999674 L1PA4 6152 - 1 4157 11047 851 1 2 406 0 1 4 2 0 1704 0 1 868 0 1 318 chain 246355 chr3 198022430 + 17005532 17008288 L1PA5 6144 - 16 2780 16426 161 1 3 310 0 1 639 0 1 133 1 0 663 0 4 624 0 3 84 2 0 138 chain 203279 chr3 198022430 + 17008566 17011501 L1PA15 4387 - 36 3009 18977 22 7 3 10 2 0 39 13 10 46 13 8 28 2 1 41 1 0 7 16 18 14 1 0 54 1 0 118 1 0 6 1 4 12 1 0 20 5 1 64 0 1 12 2 0 465 7 9 20 8 9 58 25 23 10 13 6 44 2 0 377 1 2 6 1 0 36 0 1 86 16 40 26 2 0 121 0 1 59 1 6 405 3 5 129 1 0 79 2 0 88 4 5 35 0 4 105 2 34 113 0 1 26 chain 166815 chr3 198022430 + 17011555 17013389 L1PA3long 6157 - 0 1848 22417 1376 1 15 457 chain 39361 chr3 198022430 + 17013389 17013815 L1PA3long 6157 + 3862 4288 70088 426 chain 153434 chr3 198022430 + 17020833 17022662 SVA_D 2077 - 0 2060 24168 19 0 3 513 0 225 105 1 0 157 2 52 55 11 0 3 24 0 6 5 0 22 3 1 8 3 0 29 1 0 118 3 0 33 0 3 708 chain 27318 chr3 198022430 + 17064830 17065183 THE1A 353 + 0 353 95212 110 1 0 69 3 4 170 chain 3098 chr3 198022430 + 17081613 17081654 L1PA6 6164 - 2 40 222940 10 3 0 28 chain 106653 chr3 198022430 + 17090874 17092499 L1MA2 4263 + 2471 4114 35078 169 8 6 56 2 1 20 1 0 41 9 5 363 0 1 136 0 3 5 9 17 47 0 1 124 24 51 50 2 0 17 7 3 13 12 13 49 1 0 40 0 1 103 3 0 51 1 0 99 11 9 43 38 40 10 7 0 42 2 4 10 chain 18395 chr3 198022430 + 17094987 17095253 MSTA-int 1630 - 0 275 131807 5 0 1 110 6 12 6 0 1 39 11 12 89 chain 323359 chr3 198022430 + 17138069 17141621 L1PA3long 6157 - 0 3552 12465 10 2 0 164 1 3 3375 chain 95337 chr3 198022430 + 17145159 17146470 L1MA2 4263 + 2767 4057 37999 173 3 0 203 8 5 229 0 1 72 0 5 129 7 3 68 12 11 65 30 19 56 3 0 150 11 9 92 chain 27273 chr3 198022430 + 17169031 17169384 THE1A 353 + 0 353 95361 17 2 0 30 0 1 27 0 1 277 chain 120270 chr3 198022430 + 17169384 17170946 THE1A-int 1579 + 0 1574 30954 7 0 1 136 0 1 375 10 9 121 4 7 436 23 30 446 0 1 4 chain 20326 chr3 198022430 + 17184737 17185103 MSTA 426 + 6 382 126154 109 2 1 5 0 1 12 1 0 9 10 16 14 8 14 27 51 50 118 chain 3460 chr3 198022430 + 17192333 17192378 MLT1J1 437 + 267 312 216001 45 chain 24449 chr3 198022430 + 17218007 17218305 L1PA7 6471 + 6175 6470 107813 277 1 0 7 2 0 11 chain 16455 chr3 198022430 + 17221988 17222250 L1PB4 2604 + 2312 2572 137049 33 8 4 28 2 0 29 0 1 78 13 17 50 1 0 20 chain 9188 chr3 198022430 + 17235497 17235633 MER5A1 166 - 25 156 164617 6 6 0 94 1 2 29 chain 54883 chr3 198022430 + 17359270 17359879 L1PA3long 6157 + 5548 6157 55780 609 chain 21528 chr3 198022430 + 17361119 17361382 AluY 311 + 39 299 122050 93 0 1 159 4 0 7 chain 106944 chr3 198022430 + 17384446 17385610 L1PA3long 6157 - 1988 3154 34961 1066 0 2 98 chain 177860 chr3 198022430 + 17385610 17387571 L1PA3long 6157 + 4198 6157 21178 34 1 0 839 2 0 862 0 1 223 chain 44594 chr3 198022430 + 17392694 17393229 L1PA7 6471 + 5932 6467 63488 158 0 1 273 1 2 93 2 0 8 chain 67970 chr3 198022430 + 17433870 17434732 L1PA7 6471 - 12 883 49225 10 1 0 11 7 9 22 1 0 58 0 2 25 2 1 466 0 8 144 6 3 54 3 2 4 0 1 15 0 3 33 chain 69281 chr3 198022430 + 17434732 17435528 L1PA7 6471 + 4726 5522 48692 796 chain 41987 chr3 198022430 + 17442048 17442583 MLT2A2 560 + 0 547 66643 335 2 1 66 0 11 47 5 7 80 chain 60113 chr3 198022430 + 17458685 17459351 L1PA3long 6157 - 0 666 52764 268 1 0 70 0 1 327 chain 185630 chr3 198022430 + 17490468 17492832 L1P3 4156 + 37 2413 20449 211 15 14 55 4 3 54 1 0 18 1 4 12 0 1 286 14 17 217 4 5 526 0 1 600 10 15 213 0 1 123 chain 33504 chr3 198022430 + 17492832 17493265 L1PA7 6471 + 5649 6460 78156 51 0 2 90 4 1 141 10 389 137 chain 22693 chr3 198022430 + 17513626 17513896 AluSc 308 - 6 275 117106 202 1 0 67 chain 4019 chr3 198022430 + 17522125 17522293 MER52A 1651 + 785 980 207094 6 1 0 25 69 0 23 27 124 17 chain 104395 chr3 198022430 + 17526830 17527992 L1PA3long 6157 - 2 1161 35640 140 7 0 701 0 4 314 chain 130073 chr3 198022430 + 17532239 17534357 L1PA10 4194 - 33 1877 28071 11 2 1 64 0 2 421 2 1 243 6 10 79 0 1 115 5 11 52 0 1 99 1 5 31 0 2 5 2 0 279 0 15 83 1 0 65 6 2 62 354 48 62 0 2 33 0 4 35 chain 18894 chr3 198022430 + 17545718 17545936 L1PA3long 6157 + 5945 6156 130384 74 7 0 137 chain 211313 chr3 198022430 + 17572125 17574489 L1PA4 6152 + 3788 6152 18413 2364 chain 9783 chr3 198022430 + 17579399 17579573 MER4B 649 - 81 247 161690 106 42 34 26 chain 357741 chr3 198022430 + 17631564 17636337 HERVL-int 5654 + 844 5653 11408 48 0 1 444 1 2 104 1 0 277 328 0 222 1 0 37 0 1 198 0 4 81 0 1 362 6 2 269 12 4 735 0 367 470 1 3 309 1 0 357 0 6 33 1 0 6 0 1 118 20 7 53 0 3 54 0 5 25 0 1 199 chain 19898 chr3 198022430 + 17632460 17632706 AluY 311 + 11 261 127488 65 3 6 50 0 1 128 chain 30613 chr3 198022430 + 17636338 17636770 MLT2A1 477 + 0 466 83182 169 4 1 9 0 1 18 0 1 88 1 2 87 0 1 4 1 0 4 4 0 10 7 45 26 chain 505796 chr3 198022430 + 17654388 17660527 L1PA6 6164 - 2 6164 6478 12 0 6 1087 0 1 267 1 0 417 0 4 672 5 4 71 0 1 97 2 0 195 1 4 6 3 0 120 1 0 8 5 6 850 1 2 300 10 11 36 4 0 44 7 11 72 0 5 189 12 0 216 1 0 225 13 12 304 0 4 92 1 18 597 0 1 195 chain 28969 chr3 198022430 + 17675446 17676164 L1MA2 4263 + 3649 4218 89135 13 1 0 74 6 0 50 22 20 51 1 0 99 27 25 77 7 0 10 2 1 36 209 80 7 0 2 12 2 0 12 chain 35504 chr3 198022430 + 17689406 17690027 L1PA14 3548 + 2855 3456 75546 61 1 0 4 0 1 13 23 19 44 2 0 8 2 0 14 6 9 83 11 7 13 0 1 4 9 5 53 0 4 21 1 0 61 1 0 51 1 0 11 5 1 33 5 3 14 1 0 5 1 0 17 1 0 41 chain 68747 chr3 198022430 + 17690988 17691795 L1PA7 6471 + 5666 6468 48924 6 3 0 612 0 1 38 0 1 4 1 0 130 3 0 10 chain 63674 chr3 198022430 + 17695970 17696676 L1P1 4361 - 535 1241 51157 706 chain 24693 chr3 198022430 + 17696676 17696951 L1PA3long 6157 + 5875 6150 106479 275 chain 4584 chr3 198022430 + 17706458 17706516 U7 62 + 4 61 199807 6 1 0 51 chain 161941 chr3 198022430 + 17717785 17719645 L1PA5 6144 + 4274 6144 23073 1023 0 4 182 0 3 399 1 0 96 9 16 129 1 0 6 3 1 11 chain 6740 chr3 198022430 + 17728255 17728366 MER20 218 + 36 153 179393 30 3 4 10 9 14 59 chain 29541 chr3 198022430 + 17731697 17732007 AluYa5 310 - 0 310 86464 310 chain 461154 chr3 198022430 + 17734607 17741044 L1PA3long 6157 + 8 6156 8356 105 12 26 380 70 73 111 119 138 126 4 0 12 36 15 184 189 180 496 0 1 503 1 0 477 21 20 249 4 5 82 1 0 232 8 5 92 2 1 1064 287 0 856 0 1 714 chain 5266 chr3 198022430 + 17741396 17741464 tRNA-Cys-TGY 72 - 5 72 192366 53 1 0 14 chain 113873 chr3 198022430 + 17741662 17742979 L1PA6 6164 + 4845 6162 33126 986 0 1 120 0 3 201 4 0 6 chain 132329 chr3 198022430 + 17745409 17747393 SVA_F 1814 - 0 1479 27556 625 99 0 226 322 15 60 0 1 24 126 26 502 chain 5733 chr3 198022430 + 17746047 17746133 SVA_F 1814 - 637 801 133025 48 2 0 6 4 84 26 chain 16382 chr3 198022430 + 17746359 17746532 SVA_F 1814 - 675 848 88226 173 chain 11425 chr3 198022430 + 17746532 17746678 SVA_F 1814 - 672 848 130074 49 21 50 4 0 1 72 chain 5766 chr3 198022430 + 17746768 17746829 SVA_F 1814 - 615 676 187473 61 chain 56166 chr3 198022430 + 17776971 17777700 LTR17 781 - 53 781 55031 15 6 7 379 1 0 44 0 1 94 10 9 123 1 0 56 chain 6704 chr3 198022430 + 17786718 17786803 MER92C 513 + 408 493 179660 85 chain 24276 chr3 198022430 + 17790243 17790532 AluSp 311 + 27 311 108798 124 5 0 160 chain 46717 chr3 198022430 + 17815753 17816418 LTR12_ 688 + 0 673 61442 25 1 0 65 26 1 51 1 2 13 0 1 220 25 24 146 1 34 91 chain 395449 chr3 198022430 + 17816461 17821291 HERV9-int 5642 + 0 4824 10258 382 0 1 213 25 24 110 7 9 56 1 0 53 4 2 13 0 85 147 160 0 12 2 4 46 3 7 1081 0 24 59 1 0 511 0 1 1634 0 1 265 0 39 45 chain 3574 chr3 198022430 + 17817522 17817560 HERV9-int 5642 + 1065 1103 214084 38 chain 58339 chr3 198022430 + 17823143 17823883 LTR12 884 + 0 869 53784 25 1 0 30 0 107 75 1 0 4 1 2 80 0 25 30 2 0 221 1 0 247 3 4 19 chain 3280 chr3 198022430 + 17824912 17824948 LOR1a 498 - 462 498 219347 36 chain 14357 chr3 198022430 + 17831003 17831227 L1PB 1623 - 99 312 143352 9 1 0 13 4 0 14 3 0 4 1 0 30 2 1 7 1 0 135 chain 3302 chr3 198022430 + 17854071 17854109 MLT1F 544 - 190 228 218936 38 chain 2095 chr3 198022430 + 17858652 17858680 LTR12C 1709 - 837 865 184746 28 chain 23913 chr3 198022430 + 17858680 17859079 LTR12C 1709 - 623 940 110851 54 78 0 54 8 5 136 1 0 68 chain 35067 chr3 198022430 + 17863317 17863760 L1PA8 5853 + 5417 5853 76094 145 1 0 46 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 5797 chr3 198022430 + 17872315 17872415 Tigger3c 601 - 237 540 187178 12 0 1 4 0 210 12 0 1 14 9 0 49 chain 19965 chr3 198022430 + 17891356 17891715 THE1B 368 - 0 368 127256 75 1 0 50 63 68 6 1 0 28 1 7 18 10 11 57 0 1 34 2 0 13 chain 18492 chr3 198022430 + 17899530 17899742 L1PA2 6032 - 0 213 131525 92 0 3 56 2 0 62 chain 283321 chr3 198022430 + 17899772 17902883 L1HS 6032 - 2918 6029 14448 3111 chain 110968 chr3 198022430 + 17939067 17940304 L1PA4 6152 - 9 1246 33942 165 2 0 376 0 1 87 0 1 607 chain 44326 chr3 198022430 + 17961648 17962184 L1PA7 6471 + 5909 6464 63794 308 2 1 155 1 20 19 0 1 51 chain 10302 chr3 198022430 + 17969012 17969160 MLT1A1 405 + 174 391 159127 17 0 1 79 9 77 43 chain 26759 chr3 198022430 + 17991826 17992197 THE1C 375 + 0 375 97133 88 0 1 83 1 0 4 24 28 171 chain 28300 chr3 198022430 + 17993783 17994160 THE1C 375 + 0 375 91948 116 10 9 217 3 2 31 chain 11055 chr3 198022430 + 18033368 18033549 MER30 238 + 31 225 155992 63 0 2 4 1 0 11 8 20 20 0 6 30 9 3 35 chain 535482 chr3 198022430 + 18041199 18047310 L1PA4 6152 - 9 6151 3523 106 0 3 30 0 1 1261 0 3 297 0 1 1074 1 0 202 1 0 650 0 4 804 0 1 273 5 6 24 0 1 414 5 6 594 0 17 370 chain 9973 chr3 198022430 + 18064650 18064792 MER5A 189 + 45 188 160709 67 8 9 67 chain 5803 chr3 198022430 + 18087836 18088091 MLT1F2 592 + 84 334 187123 53 170 165 32 chain 3668 chr3 198022430 + 18097803 18097900 L1PA16 3655 - 3543 3638 212438 11 3 8 18 18 14 10 2 0 26 1 0 8 chain 10558 chr3 198022430 + 18120913 18121030 L1PA4 6152 - 6 123 158012 117 chain 6777 chr3 198022430 + 18123791 18123911 MER5A 189 + 26 189 179131 34 0 42 26 20 21 40 chain 17755 chr3 198022430 + 18124704 18125069 THE1B 368 - 0 368 133553 56 7 6 63 128 132 111 chain 5892 chr3 198022430 + 18143041 18143115 MER33 330 - 248 322 186255 74 chain 188128 chr3 198022430 + 18150444 18152549 L1PA5 6144 + 4039 6144 20226 396 1 2 23 3 0 1107 0 1 242 0 1 333 chain 18394 chr3 198022430 + 18159616 18159834 L1PA5 6144 + 5926 6144 131810 218 chain 27363 chr3 198022430 + 18183291 18183600 AluYk4 311 + 0 309 95069 309 chain 31660 chr3 198022430 + 18224496 18224898 MLT2A2 560 + 15 560 81389 127 0 132 128 0 11 147 chain 25929 chr3 198022430 + 18224903 18225226 THE1B-int 1605 + 6 332 100307 9 0 2 55 0 1 259 chain 3967 chr3 198022430 + 18225226 18225302 THE1B 368 + 289 366 199124 18 21 22 37 chain 3305 chr3 198022430 + 18238047 18238085 L1M4c 1769 - 39 77 218863 38 chain 27034 chr3 198022430 + 18239626 18240020 L1PB2 3958 + 3451 3830 96164 105 12 0 38 0 1 22 1 0 64 4 3 69 2 0 22 1 0 6 5 6 43 chain 11514 chr3 198022430 + 18247244 18247385 L1PA7 6471 - 12 154 154235 137 0 1 4 chain 10582 chr3 198022430 + 18322281 18322403 Tigger3a 397 + 158 280 157906 122 chain 28360 chr3 198022430 + 18358402 18358957 L1PREC2 3366 - 375 901 91732 16 41 24 17 9 0 6 0 7 15 3 0 6 67 54 40 8 7 47 2 0 157 0 1 37 14 22 70 chain 14814 chr3 198022430 + 18360020 18360337 MER82 654 + 198 557 141898 30 7 8 26 1 0 69 1 4 67 71 84 14 6 32 25 chain 495217 chr3 198022430 + 18367235 18372779 L1PA3long 6157 - 0 6157 7113 1266 9 1 1041 0 472 199 2 1 1637 0 1 4 1 0 343 0 3 149 1 0 136 0 128 436 3 23 317 chain 37656 chr3 198022430 + 18376129 18376658 L1MB2 1706 - 12 526 72608 79 10 9 8 1 0 16 15 1 19 5 6 376 chain 24043 chr3 198022430 + 18432872 18433131 L1PA2 6032 - 3 262 110100 259 chain 84632 chr3 198022430 + 18490812 18491920 MER11A 1151 - 0 1151 41670 64 1 0 228 10 44 12 1 0 56 0 4 53 6 8 123 1 0 21 3 5 89 9 10 132 1 0 6 0 2 63 0 4 28 2 0 199 chain 10515 chr3 198022430 + 18517662 18517787 L1PA4 6152 + 6015 6139 158181 119 1 0 5 chain 372720 chr3 198022430 + 18557572 18561736 L1HS 6032 + 0 4163 11003 149 1 3 8 3 1 94 2 1 108 0 1 2722 1 0 1076 chain 107912 chr3 198022430 + 18561736 18563135 HERVL-int 5654 + 4273 5654 34749 506 7 0 6 7 0 116 1 4 213 0 1 293 0 1 6 0 5 113 19 4 38 0 1 74 chain 30110 chr3 198022430 + 18563135 18563550 MLT2A1 477 + 0 468 84455 66 0 2 101 0 4 32 5 6 19 0 6 149 18 58 25 chain 22993 chr3 198022430 + 18576501 18576771 AluSc5 308 + 11 281 115656 270 chain 3142 chr3 198022430 + 18609984 18610078 MER3 215 - 21 115 222124 13 13 12 24 4 0 4 2 0 7 7 14 20 chain 4185 chr3 198022430 + 18616539 18616587 L1PA4 6152 + 6092 6140 204761 48 chain 106960 chr3 198022430 + 18638818 18640284 THE1B-int 1605 - 33 1550 34984 47 0 5 363 10 14 351 50 51 21 7 10 254 1 26 134 8 20 80 0 1 140 chain 3057 chr3 198022430 + 18682065 18682101 Tigger1 2417 + 2065 2101 223869 36 chain 134005 chr3 198022430 + 18702395 18704006 L1PA7 6471 - 10 1636 27207 500 0 5 256 0 2 64 3 11 145 1 0 528 0 1 114 chain 396345 chr3 198022430 + 18731304 18735797 L1PA3long 6157 - 0 6157 10224 4 0 1 1632 0 3 1115 10 1549 949 0 128 504 9 0 118 12 0 13 1 15 126 chain 53523 chr3 198022430 + 18746952 18747798 L1MA2 4263 + 34 889 56663 10 0 3 65 2 3 4 1 0 44 6 0 93 17 17 36 8 18 5 1 0 92 13 19 16 1 0 5 0 1 18 1 0 127 9 18 59 4 5 39 12 0 158 chain 28944 chr3 198022430 + 18755825 18756127 AluYa5 310 - 8 310 89250 302 chain 11907 chr3 198022430 + 18779392 18779642 L1PB1 5432 - 5 229 152569 5 2 0 18 1 0 13 1 0 21 1 0 21 7 5 13 7 4 28 3 0 3 10 0 12 8 7 41 1 0 15 2 1 17 chain 29022 chr3 198022430 + 18868814 18869206 MLT2A1 477 - 83 477 88899 10 0 10 11 12 5 152 1 2 21 0 1 12 4 1 169 chain 10549 chr3 198022430 + 18870500 18870691 MER2 342 - 82 262 158047 87 26 14 36 11 12 31 chain 25133 chr3 198022430 + 18887771 18888068 AluSp 311 + 1 295 104105 131 10 7 156 chain 92987 chr3 198022430 + 18922599 18923782 L1PA8A 6298 - 7 1190 38660 269 0 1 531 4 1 198 1 2 43 29 30 108 chain 99015 chr3 198022430 + 18965750 18966903 L1P1 4361 - 258 1410 37024 874 1 0 278 chain 555435 chr3 198022430 + 18971974 18978012 L1PA2 6032 - 0 6031 778 2062 6 0 2658 1 0 1311 chain 4448 chr3 198022430 + 18978026 18978080 MSTB 430 - 376 430 201358 54 chain 48202 chr3 198022430 + 18982229 18982800 L1PA7 6471 + 5891 6462 60314 422 0 1 143 1 0 5 chain 315077 chr3 198022430 + 18983804 18987669 HERVL-int 5654 + 0 3899 12803 592 1 2 17 0 2 406 0 1 66 10 25 366 5 6 82 1 0 159 6 8 95 5 7 480 0 9 295 0 1 548 0 2 237 1 0 493 chain 63818 chr3 198022430 + 18999298 19000000 L1PA2 6032 - 2 705 51089 150 0 1 552 chain 478281 chr3 198022430 + 19000000 19005321 L1HS 6032 - 705 6028 7790 922 0 1 4130 0 1 269 chain 548908 chr3 198022430 + 19017441 19023571 L1PA3long 6157 + 10 6149 1587 941 0 4 81 1 0 9 1 4 141 0 3 1132 0 1 851 1 0 2972 chain 58786 chr3 198022430 + 19045385 19046126 L1PA7 6471 - 3 741 53530 6 6 0 188 4 5 52 0 1 72 9 10 404 chain 3884 chr3 198022430 + 19046126 19046852 L1PA7 6471 + 4994 5720 46713 301 0 1 325 2 1 98 chain 92616 chr3 198022430 + 19051073 19052081 L1PA3long 6157 - 8 1016 38779 1008 chain 3887 chr3 198022430 + 19056566 19056661 MER53 195 - 15 113 209058 12 21 22 34 4 6 24 chain 2605 chr3 198022430 + 19059404 19059891 L1PA7 6471 + 5972 6461 46713 336 12 14 139 chain 28080 chr3 198022430 + 19077017 19077310 AluYa5 310 - 12 305 92712 293 chain 66482 chr3 198022430 + 19080979 19081846 L1P3 4156 - 17 895 49881 24 2 1 7 2 0 55 1 0 45 1 0 5 4 1 8 0 1 191 0 1 11 1 4 65 0 1 168 0 4 249 1 10 27 chain 26329 chr3 198022430 + 19097269 19097594 L1PA7 6471 + 6097 6424 98702 39 0 1 171 1 2 114 chain 81774 chr3 198022430 + 19133760 19134658 L1PA3long 6157 - 0 899 42859 154 0 1 744 chain 35489 chr3 198022430 + 19137044 19138847 L1PA7 6471 - 4 1793 23340 12 6 0 103 0 1 641 0 1 82 4 0 13 11 5 331 0 1 98 4 0 95 0 1 7 1 0 301 7 10 87 chain 546258 chr3 198022430 + 19138860 19144839 L1PA2 6032 - 5 6032 1912 199 2 38 2726 0 3 2479 1 9 256 0 1 316 chain 6574 chr3 198022430 + 19144839 19145173 L1PA7 6471 - 1793 2130 23340 151 1 3 29 1 2 152 chain 379275 chr3 198022430 + 19160204 19165551 L1PA8 5853 + 479 5853 10780 44 83 84 6 0 4 37 11 9 41 73 61 588 17 18 44 1 0 323 0 2 8 0 2 156 5 7 105 17 0 167 4 6 63 0 1 4 5 4 170 0 1 34 24 20 200 9 22 159 1 2 16 1 0 31 0 2 14 3 7 28 0 26 47 18 14 253 1 2 279 0 1 45 18 17 124 0 6 227 1 0 94 0 1 114 15 16 70 0 1 28 2 1 28 1 0 6 6 7 446 1 0 188 2 0 22 1 2 59 0 1 141 0 1 42 0 4 282 1 0 46 2 0 72 1 0 7 1 0 51 2 1 10 0 2 7 1 0 93 chain 22897 chr3 198022430 + 19168109 19168464 THE1D 372 - 0 372 116123 116 7 12 51 19 21 97 12 22 53 chain 16564 chr3 198022430 + 19187027 19187228 L1PA6 6164 - 11 211 136755 6 1 0 194 chain 2473 chr3 198022430 + 19209921 19209982 L1MD2 1676 - 271 331 233385 21 14 10 9 0 4 7 1 0 9 chain 20187 chr3 198022430 + 19247322 19247871 L1PB1 5432 - 5 431 126571 4 1 0 5 1 0 14 1 0 9 1 4 21 1 0 9 2 1 14 2 0 15 1 0 4 2 0 15 28 16 15 1 0 43 6 5 12 2 1 52 2 0 9 5 1 12 132 35 8 1 0 52 0 1 34 0 2 13 chain 19690 chr3 198022430 + 19271169 19271402 THE1A-int 1579 - 1343 1579 128132 76 0 3 157 chain 83536 chr3 198022430 + 19275222 19276297 LTR12C 1709 - 0 1707 42103 84 1 0 83 0 102 212 7 11 37 0 485 192 0 1 121 0 43 80 1 2 74 3 0 36 1 0 28 0 1 115 chain 316909 chr3 198022430 + 19329727 19333318 L1PA4 6152 - 0 3584 12729 6 0 5 138 1 0 415 0 1 279 0 4 315 0 1 285 22 2 516 0 1 201 1 0 449 0 4 958 1 0 4 chain 11148 chr3 198022430 + 19338128 19338336 L1PB1 5432 + 5245 5430 155641 35 1 0 16 24 12 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 11 1 0 8 1 0 7 chain 13977 chr3 198022430 + 19348393 19348599 L1MA5A 2387 + 927 1131 144665 27 21 19 158 chain 35474 chr3 198022430 + 19359810 19360490 L1PB1 5432 - 28 800 75588 11 2 1 22 1 0 26 3 1 11 1 0 5 3 1 15 24 15 15 1 0 45 25 23 45 2 0 9 2 0 3 2 0 12 3 2 4 1 0 20 67 186 300 chain 12002 chr3 198022430 + 19373096 19373320 L1MA3 4352 - 30 217 152188 13 29 1 20 1 0 5 2 1 24 2 0 22 4 0 37 1 0 64 chain 480660 chr3 198022430 + 19391826 19397378 L1PA5 6144 + 587 6137 7705 582 9 0 770 1 0 440 0 4 819 2 1 81 0 1 232 0 1 823 0 4 949 1 0 843 chain 545196 chr3 198022430 + 19412102 19418117 L1PA2 6032 - 2 6032 2050 1146 1 0 778 0 1 357 1 2 601 0 2 56 0 1 945 0 5 355 1 0 1067 0 7 707 chain 35352 chr3 198022430 + 19464817 19465495 L1PB1 5432 - 27 676 75729 13 1 0 22 1 0 8 40 36 18 9 0 12 3 0 5 4 12 42 1 0 18 8 7 44 2 0 9 2 0 3 2 0 12 1 0 9 71 60 24 0 1 294 chain 107207 chr3 198022430 + 19503169 19504424 L1PA6 6164 - 8 1300 34911 224 0 25 474 0 1 470 1 9 59 0 3 27 chain 26806 chr3 198022430 + 19507717 19508063 Tigger1 2417 + 1796 2145 96957 23 2 6 216 1 0 104 chain 34319 chr3 198022430 + 19523426 19523869 LTR2 463 - 24 456 77178 28 1 0 30 0 1 111 8 4 25 6 0 120 1 0 113 chain 483211 chr3 198022430 + 19523883 19530967 HERVE_a-int 7009 - 1 6874 7619 12 1 0 5 3 1 19 56 46 34 5 3 21 26 22 30 1 0 27 2 0 53 3 0 26 4 0 9 2 1 55 7 5 26 2 1 5 1 0 45 1 0 23 1 0 36 1 0 7 10 7 14 1 0 10 1 0 31 1 0 13 5 3 9 19 22 44 1 2 88 2 0 80 1 0 12 1 0 20 2 0 57 1 0 5 1 0 13 1 0 16 11 14 42 1 2 28 2 0 150 2 0 109 1 0 10 2 1 86 1 0 29 8 6 30 13 11 65 1 0 14 5 1 5 0 3 17 2 1 69 1 2 11 99 90 936 8 14 356 1 0 389 1 0 29 4 5 226 2 0 243 1 0 80 1 0 72 0 2 149 3 4 177 1 0 169 1 0 37 2 1 14 1 0 144 1 0 8 7 5 13 17 12 29 6 4 25 2 1 88 16 8 10 1 0 24 1 0 16 1 0 24 1 0 44 1 0 31 4 3 8 1 0 10 0 1 26 1 0 61 2 1 37 1 0 39 1 0 22 1 0 4 2 1 10 1 0 18 2 1 10 1 0 20 1 0 18 1 0 115 4 3 14 1 0 23 1 0 57 3 1 56 1 0 5 1 0 4 2 1 10 9 7 5 1 0 22 1 0 12 9 7 23 4 0 11 1 0 6 3 1 14 0 10 12 1 0 14 10 6 29 4 3 16 2 0 38 1 0 32 2 1 73 1 0 8 1 0 26 1 0 67 1 0 27 5 3 52 1 0 10 1 0 33 2 1 14 15 13 97 5 4 32 1 0 25 0 2 26 1 0 18 4 2 45 2 1 24 4 2 34 28 0 12 53 43 14 1 0 8 1 0 7 1 0 4 1 0 24 3 1 6 2 0 69 1 0 6 1 0 28 21 0 21 chain 37353 chr3 198022430 + 19531723 19532191 LTR2 463 - 0 460 73024 24 1 0 30 1 0 27 0 1 142 6 0 119 1 0 117 chain 38060 chr3 198022430 + 19540040 19540476 L1HS 6032 - 4974 5409 72045 208 2 1 226 chain 439831 chr3 198022430 + 19540491 19545415 L1PA3long 6157 + 1201 6142 9057 565 6 8 174 1 0 336 0 1 149 0 3 272 0 5 152 0 1 222 0 4 434 0 1 416 0 1 209 0 4 639 4 0 1345 chain 21481 chr3 198022430 + 19552488 19552747 L1PA7 6471 - 1 261 122214 162 0 1 97 chain 13110 chr3 198022430 + 19561573 19561728 L1PA7 6471 - 3 156 147808 9 2 0 144 chain 24669 chr3 198022430 + 19586161 19586460 L1PA6 6164 + 5863 6162 106616 299 chain 137874 chr3 198022430 + 19598500 19600075 L1PA4 6152 - 0 1580 26500 70 0 1 773 0 4 369 1 0 358 0 1 4 chain 312399 chr3 198022430 + 19623293 19626791 L1PA4 6152 + 2644 6143 12918 877 0 1 272 0 1 808 1 0 1540 chain 459988 chr3 198022430 + 19631760 19636878 L1PA3long 6157 - 8 5129 8400 140 1 3 873 18 12 620 7 8 199 0 2 1075 0 1 1632 0 3 553 chain 7751 chr3 198022430 + 19642119 19642235 L1MA2 4263 + 3940 4056 172597 16 9 9 91 chain 19047 chr3 198022430 + 19647936 19648144 L1PA3long 6157 + 5309 5517 129984 208 chain 57857 chr3 198022430 + 19648144 19648780 L1PA3long 6157 + 5521 6157 54059 636 chain 33019 chr3 198022430 + 19660863 19661520 L1MA1 4479 - 373 877 79186 28 1 0 26 0 1 99 4 0 5 1 0 56 142 0 32 1 0 14 2 0 19 1 0 40 0 1 28 13 12 6 2 0 24 1 0 45 3 4 64 chain 202244 chr3 198022430 + 19665328 19667551 L1PA3long 6157 - 15 2240 19049 1780 0 2 443 chain 107374 chr3 198022430 + 19667551 19668755 L1P1 4361 + 2501 3709 34870 753 0 4 451 chain 137635 chr3 198022430 + 19676535 19678159 L1PA5 6144 - 2142 3769 26498 70 0 1 248 0 3 271 0 1 206 1 0 32 1 0 795 chain 181699 chr3 198022430 + 19678159 19680294 L1PA5 6144 + 4009 6141 20821 151 0 1 7 1 0 460 3 0 666 1 0 151 0 2 547 0 1 115 2 0 31 chain 28484 chr3 198022430 + 19690409 19690712 AluYg6 310 - 7 310 91247 303 chain 28969 chr3 198022430 + 19691190 19691563 L1PA7 6471 - 1715 2102 88038 86 6 12 108 0 7 17 1 2 155 chain 139394 chr3 198022430 + 19691563 19693282 L1PA7 6471 + 4767 6466 26235 330 22 0 168 0 1 88 1 0 45 1 2 213 0 3 81 0 2 19 1 0 144 0 1 455 5 4 136 3 0 7 chain 116111 chr3 198022430 + 19695417 19697298 THE1D-int 1627 - 0 1611 32413 195 279 0 59 0 1 318 1 0 5 1 0 19 14 24 93 38 39 148 12 0 9 7 19 157 1 0 218 1 2 283 1 0 22 chain 481888 chr3 198022430 + 19718183 19724395 L1PA7 6471 - 10 6443 7658 250 7 6 536 4 3 42 0 3 952 0 4 57 0 3 381 1 0 130 1 2 256 1 0 231 10 9 103 8 9 241 4 0 6 3 7 340 0 4 253 0 1 341 3 0 551 3 1 5 0 2 544 1 0 285 15 15 96 0 17 40 4 14 195 38 208 37 0 8 10 105 104 55 7 16 60 chain 43783 chr3 198022430 + 19728839 19729366 L1PA6 6164 - 8 542 64472 61 0 7 466 chain 385126 chr3 198022430 + 19730531 19736383 L1PB1 5432 + 34 5420 10604 18 1 2 137 0 1 108 23 9 93 1 0 4 0 1 220 0 1 67 1 0 4 0 4 21 4 5 37 4 3 128 1 0 4 0 1 55 15 16 168 21 19 183 0 6 9 28 0 23 22 0 14 5 23 183 0 5 75 7 8 550 7 6 7 0 1 239 1 0 85 0 5 248 0 4 8 13 1 43 0 3 40 9 10 371 12 11 55 2 1 20 0 1 249 1 0 82 2 3 176 0 6 17 302 6 19 1 0 35 0 1 113 95 4 266 7 5 201 0 1 44 3 0 178 0 5 179 29 31 84 40 0 14 3 0 19 1 0 10 1 0 12 5 1 8 2 0 17 0 12 24 2 1 15 1 0 45 1 0 15 28 15 16 3 1 4 1 0 14 2 0 24 1 0 11 1 2 7 0 3 11 1 0 16 chain 6775 chr3 198022430 + 19734924 19735017 L1PB1 5432 + 3477 3558 176971 60 12 0 21 chain 6346 chr3 198022430 + 19744733 19744827 LTR12C 1709 + 737 877 182421 9 0 6 62 3 43 20 chain 2665 chr3 198022430 + 19748256 19748284 MER5B 177 + 79 107 230821 28 chain 35586 chr3 198022430 + 19748593 19749044 L1PA7 6471 - 3 445 75428 7 4 0 141 1 0 33 6 2 259 chain 9185 chr3 198022430 + 19770664 19770833 L1MB8 1703 + 1409 1581 164631 16 1 0 4 0 1 5 2 0 68 18 21 40 4 6 11 chain 184133 chr3 198022430 + 19793352 19795395 L1PA4 6152 + 4089 6143 20577 1217 0 4 201 0 4 155 0 1 146 0 1 220 0 1 104 chain 27686 chr3 198022430 + 19795772 19796083 L1PA6 6164 - 231 543 94092 106 0 1 205 chain 65233 chr3 198022430 + 19796759 19797526 L1PA6 6164 - 2 772 50453 332 1 2 64 0 1 364 0 1 6 chain 244169 chr3 198022430 + 19819621 19822386 L1PA4 6152 + 3380 6152 16550 395 0 3 326 1 0 2037 0 5 6 chain 121540 chr3 198022430 + 19827022 19828935 THE1A-int 1579 + 0 1570 30523 332 1 7 77 2 1 21 359 1 321 4 1 82 0 5 34 21 26 90 0 2 167 0 1 402 chain 24928 chr3 198022430 + 19828944 19829276 THE1A 353 + 0 332 105174 110 1 0 81 24 25 116 chain 7876 chr3 198022430 + 19829386 19829478 L1PA5 6144 - 6 98 171828 92 chain 88333 chr3 198022430 + 19829478 19830468 L1P1 4361 + 2786 3777 40250 391 1 0 67 0 3 436 1 0 94 chain 4199 chr3 198022430 + 19832345 19832394 MER5A1 166 - 93 142 204568 49 chain 14492 chr3 198022430 + 19843575 19843915 MER61A 341 - 0 341 142912 39 47 43 37 1 0 9 1 0 11 47 46 71 4 3 15 1 17 35 7 0 15 chain 25490 chr3 198022430 + 19853286 19853714 MER61D 487 + 0 487 102272 145 0 60 11 25 25 28 29 32 22 13 11 72 1 0 66 1 0 15 chain 7490 chr3 198022430 + 19863947 19864278 L1M3c 1411 - 580 913 174203 29 4 3 36 22 20 46 147 172 8 19 0 4 1 0 15 chain 442160 chr3 198022430 + 19882416 19888595 L1PA7 6471 - 2 5727 8991 15 6 3 141 6 7 5 1 0 288 8 10 60 0 9 302 1 9 117 0 1 306 0 1 69 0 2 238 0 1 5 2 3 46 2 1 41 1 3 87 0 1 28 1 0 201 0 1 35 1 2 421 620 1 180 3 0 206 1 2 73 0 4 15 2 0 84 0 150 168 0 1 207 6 3 16 8 3 324 0 2 306 1 0 782 0 1 195 28 23 55 1 0 4 0 1 245 1 0 91 1 2 122 chain 50201 chr3 198022430 + 19884859 19885469 L1PA7 6471 - 4 612 58868 8 2 0 600 chain 141659 chr3 198022430 + 19894506 19896131 L1PA5 6144 + 4518 6142 25874 1471 8 7 146 chain 549520 chr3 198022430 + 19896540 19902567 L1PA2 6032 + 0 6030 1513 4668 4 6 43 0 1 1312 chain 27406 chr3 198022430 + 19903631 19903984 THE1A 353 - 0 353 94947 29 0 2 124 1 0 88 1 0 110 chain 126706 chr3 198022430 + 19903989 19906222 THE1A-int 1579 - 5 1575 28883 186 3 0 237 2 0 139 0 1 359 14 16 41 0 1 47 659 0 116 1 0 8 0 1 13 0 1 136 0 2 161 6 0 105 chain 9718 chr3 198022430 + 19905018 19905126 L1PA5 6144 + 5506 5614 161993 108 chain 44307 chr3 198022430 + 19905134 19905640 L1PA5 6144 + 5623 6128 63815 409 1 0 96 chain 29598 chr3 198022430 + 19906322 19906700 MLT2A1 477 - 94 477 86216 209 1 5 14 12 13 142 chain 226777 chr3 198022430 + 19913286 19915882 HERV17-int 4347 - 1733 4334 17494 382 0 1 483 0 1 234 0 1 44 4 0 893 5 16 420 1 0 25 2 0 36 1 0 51 1 0 14 chain 4962 chr3 198022430 + 19915882 19915934 HERV17-int 4347 - 4156 4208 194569 52 chain 4398 chr3 198022430 + 19915935 19915998 HERV17-int 4347 - 4208 4269 201967 26 2 0 35 chain 4793 chr3 198022430 + 19915999 19916050 HERV17-int 4347 - 4269 4320 197440 51 chain 39619 chr3 198022430 + 19917604 19918133 LTR17 781 - 0 526 69866 11 0 2 32 4 26 274 28 10 98 0 1 18 10 0 54 chain 67691 chr3 198022430 + 19953086 19954334 L1M1 2793 + 1111 2185 49368 53 20 21 63 2 0 23 5 0 9 19 18 10 0 1 4 1 0 26 176 10 38 0 3 172 0 4 129 9 4 36 15 13 60 6 0 17 22 21 195 6 0 9 0 7 31 2 0 8 0 6 56 0 1 26 chain 31435 chr3 198022430 + 19983924 19984415 MER1A 529 - 0 488 81755 64 42 27 33 0 4 156 5 11 141 8 9 18 5 6 19 chain 77826 chr3 198022430 + 20029266 20030330 MER11B 1079 + 0 1079 44607 190 28 35 312 0 1 4 6 5 28 18 20 77 0 4 90 5 7 102 1 2 39 2 1 70 2 0 46 0 1 30 1 2 13 chain 23817 chr3 198022430 + 20046635 20046932 AluSp 311 - 10 300 111378 11 7 0 279 chain 23395 chr3 198022430 + 20063807 20064210 L1MC2 1988 + 1586 1978 113673 85 5 15 6 6 0 71 7 10 74 4 0 69 37 24 6 1 0 32 chain 3076 chr3 198022430 + 20088316 20088351 MER20 218 + 31 66 223391 35 chain 3995 chr3 198022430 + 20129234 20129279 L1MA8 2339 - 284 329 207449 45 chain 5984 chr3 198022430 + 20134612 20134827 LTR16C 481 - 4 233 185397 65 75 91 12 37 36 8 1 0 17 chain 23330 chr3 198022430 + 20135577 20135946 THE1D 372 - 0 372 114030 126 35 36 16 13 10 8 1 0 18 0 2 24 0 4 128 chain 23705 chr3 198022430 + 20166533 20166820 AluYk4 311 + 0 305 112007 19 0 1 103 1 0 27 8 26 129 chain 12779 chr3 198022430 + 20198006 20198262 Tigger3a 397 - 13 344 149143 26 32 34 22 16 40 122 16 65 22 chain 4530 chr3 198022430 + 20210023 20210097 MER3 215 + 17 88 200446 30 9 6 35 chain 21571 chr3 198022430 + 20211624 20211875 AluSp 311 + 11 267 121876 8 0 5 243 chain 7154 chr3 198022430 + 20234279 20234366 HY4 93 - 3 93 176371 12 0 3 75 chain 2734 chr3 198022430 + 20235593 20235625 L1MD2 1676 + 1466 1498 229682 32 chain 3104 chr3 198022430 + 20249336 20249372 L1PA14 3548 - 1284 1320 222863 36 chain 28425 chr3 198022430 + 20252982 20253283 AluYa5 310 - 9 310 91488 301 chain 25472 chr3 198022430 + 20257920 20258209 AluSc 308 + 7 296 102345 289 chain 126662 chr3 198022430 + 20260602 20261997 L1PA3long 6157 - 0 1403 28901 320 0 8 1075 chain 120467 chr3 198022430 + 20278533 20279866 L1PA3long 6157 + 4816 6156 30882 501 0 1 44 0 3 17 0 3 771 chain 27228 chr3 198022430 + 20289887 20290257 THE1C 375 - 0 366 95505 26 1 0 229 21 18 93 chain 11958 chr3 198022430 + 20293496 20293693 L1PA16 3655 - 1497 1684 152371 121 34 27 5 3 0 34 chain 214421 chr3 198022430 + 20293696 20296632 L1P3 4156 - 1233 4156 18201 294 20 1 42 6 7 706 9 8 108 1 0 3 1 0 5 0 1 80 1 2 455 4 8 179 39 37 87 14 14 103 6 5 11 16 15 24 9 10 209 19 18 90 1 0 81 1 0 59 12 21 46 9 8 118 2 3 43 2 1 21 chain 238406 chr3 198022430 + 20302429 20305042 L1PA3long 6157 - 2 2618 16857 257 0 1 1108 0 1 888 0 1 360 chain 248507 chr3 198022430 + 20307346 20310456 L1PA7 6471 - 2 3165 16335 103 1 2 42 1 0 6 0 1 32 14 16 36 4 5 524 0 2 79 1 2 375 0 1 258 2 0 5 0 2 29 1 0 398 0 1 292 0 1 248 1 2 75 0 16 18 0 7 78 0 4 230 0 3 59 0 9 58 0 4 140 chain 54598 chr3 198022430 + 20310920 20311723 LTR12_ 688 + 0 688 55967 126 0 1 15 3 4 35 25 1 159 0 2 111 95 0 234 chain 1473 chr3 198022430 + 20311408 20311459 LTR12_ 688 + 476 527 183520 51 chain 320149 chr3 198022430 + 20311751 20315610 HERV9-int 5642 + 0 4812 12589 173 0 1 422 7 8 191 1 0 312 3 0 126 7 18 328 6 3 1368 5 8 52 7 942 563 0 9 288 chain 59032 chr3 198022430 + 20317223 20317935 LTR12_ 688 + 0 688 53374 170 24 0 518 chain 77736 chr3 198022430 + 20323970 20325049 MER11A 1151 + 0 1151 44638 40 1 0 15 0 99 76 1 0 27 1 0 37 4 0 32 0 2 115 0 1 93 1 2 145 5 6 144 19 0 5 1 0 8 8 15 22 18 0 36 0 1 60 6 7 78 5 9 76 chain 26692 chr3 198022430 + 20353330 20353628 AluYk4 311 + 8 307 97346 20 0 1 278 chain 6840 chr3 198022430 + 20370789 20371054 LTR37A 408 + 65 340 178658 19 159 170 8 1 0 78 chain 22883 chr3 198022430 + 20386321 20386671 THE1D 372 - 23 370 116175 108 30 38 15 2 0 56 0 4 73 9 0 43 4 0 10 chain 24431 chr3 198022430 + 20394027 20394417 L1MA1 4479 - 317 695 107909 11 1 0 9 1 0 35 2 0 29 1 0 126 19 15 75 1 0 17 2 0 19 1 0 20 0 1 21 chain 495859 chr3 198022430 + 20395246 20400740 L1PA3long 6157 - 0 5505 7079 772 0 2 537 0 1 43 4 6 2438 0 1 1165 0 3 137 0 2 398 chain 36379 chr3 198022430 + 20405454 20405920 LTR2 463 - 0 463 74386 88 12 13 133 5 1 228 chain 426584 chr3 198022430 + 20405920 20411028 Harlequin-int 5206 - 0 5076 9384 8 1 0 913 5 6 20 6 5 47 26 21 10 9 14 396 1 0 90 7 0 622 0 2 790 1 2 4 1 0 963 2 1 118 13 1 166 1 0 232 0 2 231 0 1 59 2 0 6 6 4 96 10 0 246 chain 35499 chr3 198022430 + 20412476 20412938 LTR2 463 - 0 463 75554 44 0 3 41 12 13 97 0 1 35 8 4 225 chain 154097 chr3 198022430 + 20427026 20429803 MER57-int 2662 + 529 2659 24084 217 0 1 123 0 8 192 314 0 32 3 7 257 0 2 31 1 0 147 0 1 54 0 16 275 0 1 16 3 0 197 329 0 226 6 1 61 1 6 13 5 0 10 1 0 10 8 3 68 14 2 11 2 0 26 1 0 5 1 0 8 3 0 26 1 0 4 5 6 33 3 0 34 chain 27905 chr3 198022430 + 20429808 20430230 MER57A1 433 + 0 430 93351 207 9 16 57 39 40 110 chain 530372 chr3 198022430 + 20468642 20475062 L1PA7 6471 - 6 6468 4147 7 0 2 146 1 0 144 0 1 367 0 1 94 2 3 76 0 3 288 1 2 509 0 4 140 0 4 80 1 0 174 0 9 32 0 1 486 0 1 61 0 1 175 2 1 150 1 0 60 0 3 113 0 1 139 0 3 84 0 4 10 0 1 453 4 1 44 0 1 233 5 4 84 1 0 226 2 1 162 7 6 314 0 1 191 1 2 4 1 0 239 3 0 493 6 18 203 1 2 400 chain 28077 chr3 198022430 + 20485026 20485556 MLT2A1 477 + 0 383 92728 81 1 0 87 5 2 9 0 1 24 0 1 121 154 9 48 chain 2307 chr3 198022430 + 20485368 20485394 MLT2A1 477 + 357 383 235338 26 chain 2188 chr3 198022430 + 20485470 20485494 MLT2A1 477 + 301 325 236674 24 chain 45733 chr3 198022430 + 20499259 20499766 MER9a3 513 - 7 513 62286 492 1 0 14 chain 3934 chr3 198022430 + 20525809 20525853 MADE1 96 + 5 49 208352 44 chain 10112 chr3 198022430 + 20538935 20539057 L1PA16 3655 - 107 229 160035 122 chain 257010 chr3 198022430 + 20540135 20543864 L1PB2 3958 - 126 3874 15882 57 1 0 96 1 0 60 2 1 80 1 0 30 3 0 22 0 1 22 0 3 9 2 0 12 2 0 62 4 0 16 1 0 54 6 4 39 1 0 212 7 33 95 1 0 229 3 6 5 1 0 5 0 1 412 0 1 4 4 3 369 10 3 117 1 3 49 14 6 65 1 4 50 6 0 33 9 12 209 0 5 62 8 15 102 4 0 141 2 1 9 23 24 70 5 33 144 1 0 32 1 0 169 26 22 280 2 0 49 19 13 19 11 9 26 11 10 19 chain 9804 chr3 198022430 + 20556826 20556944 L1PA7 6471 - 7 125 161575 118 chain 114337 chr3 198022430 + 20560797 20562543 L1PB1 5432 - 10 2369 32983 18 1 0 12 1 0 19 7 6 17 6 4 14 1 0 5 3 1 18 27 16 11 1 0 44 0 1 10 7 6 52 18 12 12 5 643 53 4 6 139 3 0 21 15 18 115 9 5 87 29 28 65 0 2 241 1 3 434 12 12 209 chain 123911 chr3 198022430 + 20588777 20590315 SVA_B 1603 - 0 1603 29730 6 2 0 570 9 46 11 1 0 22 0 1 12 0 43 106 0 3 19 18 15 77 0 3 475 0 1 122 0 5 22 16 9 20 15 0 15 chain 39057 chr3 198022430 + 20630653 20631217 LTR22 571 - 0 571 70655 58 2 1 59 0 1 12 81 83 36 0 6 237 1 0 78 chain 13597 chr3 198022430 + 20650599 20650941 L1PB1 5432 + 5107 5413 145984 7 3 0 11 10 9 13 17 12 10 10 8 43 2 1 16 11 7 36 1 0 16 3 0 7 14 5 19 8 5 14 2 0 24 1 0 34 1 0 9 chain 42461 chr3 198022430 + 20655874 20656375 MER9a2 513 - 0 513 66057 217 1 13 283 chain 319391 chr3 198022430 + 20656375 20660147 HERVK9-int 4720 - 0 4684 12620 275 0 1 1032 2 1 556 4 0 431 4 928 242 1 0 114 0 1 977 2 0 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 44002 chr3 198022430 + 20661467 20661982 MER9a2 513 - 0 513 64205 68 2 0 445 chain 15271 chr3 198022430 + 20669450 20669688 L1M1 2793 - 96 327 140564 12 1 0 12 1 0 45 1 0 59 21 17 86 chain 88193 chr3 198022430 + 20670905 20672767 L1PA14 3548 - 63 1395 40302 14 1 6 10 6 0 29 58 53 31 5 1 10 1 0 15 0 1 94 1 0 84 1 0 6 2 0 10 19 15 22 0 5 74 2 0 4 2 0 48 2 0 14 3 1 88 529 13 149 1 0 152 2 1 80 0 1 58 0 7 139 0 1 96 chain 38428 chr3 198022430 + 20671579 20672011 L1PA3long 6157 + 5725 6157 71538 432 chain 25297 chr3 198022430 + 20697484 20697764 L1PA5 6144 - 9 289 103242 280 chain 11084 chr3 198022430 + 20706707 20706846 L1PREC2 3366 - 771 910 155869 139 chain 101353 chr3 198022430 + 20744738 20745923 L1PA6 6164 - 8 1199 36430 145 0 1 394 0 1 415 0 4 231 chain 129058 chr3 198022430 + 20756894 20758429 L1PA7 6471 + 4918 6470 28302 294 0 1 365 3 0 47 1 4 57 0 1 11 0 14 130 3 4 624 chain 6593 chr3 198022430 + 20842293 20842407 L1MA5A 2387 + 1933 2049 180514 43 15 18 39 1 0 16 chain 532489 chr3 198022430 + 20856924 20863023 L1PA5 6144 - 6 6141 3912 140 1 0 46 0 1 1101 0 1 67 0 22 722 0 1 266 0 1 107 0 1 494 0 1 9 1 0 618 0 1 950 0 2 302 0 1 638 0 6 637 chain 32898 chr3 198022430 + 20883152 20883655 LTR3B_ 500 + 0 459 79374 78 2 1 71 0 1 4 8 7 141 0 1 40 9 7 56 0 2 21 46 2 27 chain 28403 chr3 198022430 + 20905717 20906092 THE1B 368 - 0 368 91565 168 6 0 26 3 2 172 chain 147592 chr3 198022430 + 20907651 20909313 SVA_D 2077 - 2 2057 24944 17 1 0 569 1 0 100 0 1 41 1 2 37 1 392 540 0 1 45 0 1 309 chain 27088 chr3 198022430 + 20913130 20913488 MLT2A1 477 + 0 362 95980 141 1 2 25 1 5 151 1 0 38 chain 12957 chr3 198022430 + 20913616 20914492 HERVL-int 5654 + 0 880 41667 103 1 2 4 1 0 307 1 3 168 1 0 4 0 1 63 0 1 174 4 5 45 chain 217099 chr3 198022430 + 20914493 20918982 HERVL-int 5654 - 291 3115 18051 27 1 0 4 0 1 144 0 1 4 1 0 72 9 10 143 0 3 11 0 2 427 1697 0 800 2 0 5 2 3 801 1 13 131 5 11 44 34 43 124 chain 144726 chr3 198022430 + 20915417 20917029 L1PA4 6152 - 9 1620 25364 148 1 0 1463 chain 5266 chr3 198022430 + 20918982 20919338 HERVL-int 5654 + 5296 5654 41667 68 0 1 69 0 1 219 chain 31363 chr3 198022430 + 20919338 20919778 MLT2A1 477 + 0 477 81882 126 1 0 15 1 2 22 5 9 149 1 0 62 16 50 42 chain 128810 chr3 198022430 + 20962431 20965604 L1PB1 5432 + 2827 5103 28358 15 1 0 45 2 5 113 8 12 282 1331 433 5 0 1 17 1 0 167 6 17 39 8 10 38 32 4 598 3 0 9 1 0 68 7 19 100 11 13 158 12 12 96 chain 75605 chr3 198022430 + 20962920 20963794 MER11D 897 - 0 897 45710 295 1 24 578 chain 5296 chr3 198022430 + 20978593 20978652 L1PA16 3655 - 129 188 192059 59 chain 137420 chr3 198022430 + 21003076 21005110 MER4-int 2692 + 954 2685 26571 61 7 5 541 2 5 71 305 0 542 0 1 104 2 3 54 0 2 61 2 1 275 2 0 5 chain 27464 chr3 198022430 + 21009032 21009443 LTR7 482 - 0 482 94762 174 0 1 7 44 76 109 8 46 69 chain 281239 chr3 198022430 + 21010696 21014309 HERVH-int 3825 - 0 3825 14575 223 0 2 262 8 218 25 1 4 10 9 11 212 1 2 5 1 0 553 0 1 581 8 35 211 1 0 39 9 0 201 16 1 83 10 4 363 1 0 49 2 1 8 20 0 22 2 1 15 2 0 27 1 38 14 9 1 14 10 4 5 1 0 10 1 0 24 0 1 4 1 0 11 11 10 124 1 5 58 1 0 333 chain 30690 chr3 198022430 + 21014323 21014723 LTR7 482 - 12 482 83051 164 0 1 8 0 31 17 1 0 24 0 1 106 0 5 7 4 37 69 chain 57372 chr3 198022430 + 21027556 21028312 MER4E 760 - 0 760 54300 306 4 8 83 0 2 53 1 0 56 2 0 76 13 7 9 0 9 127 2 0 24 chain 68936 chr3 198022430 + 21030516 21031291 L1PA5 6144 - 18 793 48845 775 chain 50138 chr3 198022430 + 21032025 21032683 PABL_A 660 - 0 660 58914 33 0 1 52 0 1 4 8 7 220 0 1 5 1 0 28 0 1 4 7 6 22 0 1 274 chain 48377 chr3 198022430 + 21036391 21037112 MER4E 760 - 0 760 60197 18 36 62 226 5 9 50 10 14 18 0 2 136 7 9 39 14 8 9 0 9 127 2 0 24 chain 7087 chr3 198022430 + 21040311 21040392 L1PA4 6152 - 6 97 176844 57 0 10 24 chain 5848 chr3 198022430 + 21049711 21049785 LTR12F 595 - 418 490 186705 31 2 0 41 chain 45225 chr3 198022430 + 21050671 21051596 MER11C 1089 + 0 1074 62800 55 0 91 113 0 3 57 1 18 123 8 11 6 4 0 23 301 336 53 0 1 70 0 1 31 1 3 79 chain 10341 chr3 198022430 + 21068878 21069044 Tigger3a 397 - 86 257 158942 4 1 0 82 5 0 15 0 7 15 8 12 36 chain 2920 chr3 198022430 + 21121731 21121765 L1MC4 1079 - 839 873 226681 34 chain 21151 chr3 198022430 + 21125538 21125799 AluY 311 + 17 274 123367 31 1 0 166 3 0 60 chain 29008 chr3 198022430 + 21151466 21151780 AluYb8 318 - 9 318 88949 177 5 0 132 chain 325344 chr3 198022430 + 21166043 21170207 L1P3 4156 + 0 4139 12376 242 23 22 56 1 0 81 6 0 99 9 8 296 0 1 194 12 6 403 1 4 1143 0 3 23 0 1 52 24 1 96 1 0 145 7 11 23 0 3 511 2 1 54 5 4 36 0 1 44 0 4 73 0 1 189 1 2 164 3 0 110 2 0 7 2 1 24 chain 2962 chr3 198022430 + 21171383 21171416 MER33 330 + 261 294 225849 33 chain 30915 chr3 198022430 + 21172219 21172587 L1PA5 6144 + 5760 6128 82661 234 8 8 126 chain 15328 chr3 198022430 + 21191891 21192064 L1PA7 6471 - 16 189 140399 173 chain 11058 chr3 198022430 + 21192076 21192223 L1PA7 6471 + 6326 6467 155974 7 7 0 125 0 1 8 chain 124859 chr3 198022430 + 21222848 21224225 L1PA3long 6157 - 775 2164 29436 400 0 7 617 0 4 149 0 1 211 chain 71201 chr3 198022430 + 21224225 21225024 L1PA3long 6157 + 5362 6157 47754 365 4 0 430 chain 37084 chr3 198022430 + 21227215 21227663 LTR7C 471 - 22 470 73411 448 chain 26568 chr3 198022430 + 21230521 21230915 LTR7 482 - 10 482 97766 146 0 10 21 1 32 14 9 7 17 0 1 109 23 61 54 chain 267099 chr3 198022430 + 21232169 21235294 HERVH-int 3825 - 0 3825 15336 1283 0 1 243 0 1 198 37 38 192 0 1 549 0 1 363 1 3 171 0 693 88 chain 21426 chr3 198022430 + 21235309 21235695 LTR7 482 - 13 480 122419 145 1 12 20 0 31 14 22 23 39 51 0 21 6 95 67 chain 11519 chr3 198022430 + 21237507 21237649 L1PA7 6471 + 6197 6338 154223 25 1 0 116 chain 16973 chr3 198022430 + 21254871 21255076 L1PA7 6471 + 6258 6469 135658 99 0 6 106 chain 28345 chr3 198022430 + 21255383 21255836 L1PA11 4918 - 547 980 91781 46 1 0 11 0 4 53 69 43 5 0 1 204 0 2 64 chain 152133 chr3 198022430 + 21285084 21286940 L1PA7 6471 - 1 1865 24320 160 27 19 670 1 3 133 7 9 138 0 7 528 0 1 127 0 4 65 chain 548791 chr3 198022430 + 21291216 21297247 L1PA2 6032 - 0 6032 1605 295 1 2 105 4 0 2470 7 11 2893 6 5 176 0 1 74 chain 5504 chr3 198022430 + 21312923 21313032 LTR12C 1709 - 501 778 190008 49 5 91 12 11 93 32 chain 74044 chr3 198022430 + 21317807 21318624 L1PA3long 6157 - 2 815 46353 424 4 0 389 chain 126353 chr3 198022430 + 21318624 21319999 L1PA3long 6157 + 3969 5344 28993 1375 chain 464540 chr3 198022430 + 21321236 21326915 L1PA7 6471 - 13 5696 8237 34 5 6 104 0 1 313 10 0 18 0 1 157 2 0 121 2 0 82 2 0 1075 0 2 265 0 2 216 13 18 38 3 0 5 0 3 474 2 1 890 1 0 110 2 4 431 1 0 261 12 13 330 0 1 63 1 4 15 0 3 216 0 1 405 chain 59982 chr3 198022430 + 21344263 21345037 LTR17 781 - 0 781 52836 49 1 23 340 0 1 5 24 8 28 1 0 63 19 20 244 chain 59099 chr3 198022430 + 21348629 21349773 L1PB1 5432 + 4363 5422 53332 91 0 2 95 23 22 53 2 0 59 0 2 16 0 2 50 4 5 52 23 22 18 8 1 18 0 1 12 0 3 140 11 12 59 8 7 11 133 71 33 2 1 10 5 4 45 1 0 16 1 0 4 2 0 10 9 0 16 3 1 5 1 0 7 9 7 24 1 0 22 1 0 12 1 0 18 chain 21701 chr3 198022430 + 21384511 21384768 AluY 311 + 40 297 121378 257 chain 84570 chr3 198022430 + 21394059 21395612 L1PA7 6471 + 5377 6464 41691 26 0 1 171 1 2 44 6 0 24 1 0 4 0 1 235 12 18 368 469 0 49 2 3 141 chain 37341 chr3 198022430 + 21394955 21395420 LTR2 463 + 0 463 73035 362 12 13 30 6 3 55 chain 369737 chr3 198022430 + 21406345 21410606 L1PA4 6152 + 0 6143 11106 1946 1 0 367 0 1 48 0 1 79 0 1877 35 0 4 129 1 0 697 0 2 513 7 6 438 chain 44320 chr3 198022430 + 21418349 21418896 MLT2A2 560 - 0 560 63806 53 3 4 4 1 0 82 0 11 303 0 2 101 chain 29383 chr3 198022430 + 21419405 21419800 LTR7 482 - 12 477 87152 189 4 35 21 0 1 109 8 46 64 chain 183099 chr3 198022430 + 21421750 21424036 HERVH-int 3825 - 0 3825 20671 148 1 2 337 8 218 25 0 3 465 0 1 326 0 1 198 10 15 320 0 5 45 4 31 115 12 7 133 10 0 58 4 1305 67 chain 28571 chr3 198022430 + 21424051 21424447 LTR7 482 - 13 482 90858 161 1 4 27 0 31 18 3 4 109 8 46 69 chain 48963 chr3 198022430 + 21425820 21426580 MER4E1 777 - 0 777 59777 73 6 5 134 1 0 4 0 1 9 11 0 6 3 9 62 60 57 65 0 19 197 0 4 73 0 1 5 0 1 31 1 2 19 chain 117185 chr3 198022430 + 21427614 21429175 LTR12C 1709 - 0 1619 32064 84 1 0 45 0 1 351 11 4 15 24 0 76 0 47 55 0 41 153 1 0 144 41 0 222 8 7 85 0 43 134 0 1 111 chain 30214 chr3 198022430 + 21457504 21457821 AluYb8 318 - 1 318 84149 317 chain 54456 chr3 198022430 + 21463954 21464649 L1PREC2 3366 + 1690 2391 56068 123 0 3 153 0 1 61 0 1 137 0 1 221 chain 192563 chr3 198022430 + 21496047 21498237 L1PA5 6144 + 3947 6143 19810 94 0 1 307 0 4 720 3 0 218 0 4 686 19 19 143 chain 256827 chr3 198022430 + 21585501 21589097 MER61-int 3695 + 31 3679 15892 19 1 0 131 4 6 23 0 10 12 0 2 38 1 0 137 9 10 52 9 0 68 0 4 94 2 0 44 61 64 57 6 5 275 0 2 38 0 5 123 0 1 169 0 2 91 15 18 8 2 0 69 0 4 7 0 5 72 3 1 5 0 1 79 5 6 292 0 13 33 0 1 10 3 0 20 2 4 12 13 4 207 0 1 39 0 1 154 0 1 35 1 0 85 0 6 61 1 0 96 1 0 148 1 0 4 0 1 135 5 6 4 1 0 13 3 5 161 3 5 217 0 4 6 0 1 4 1 0 68 1 7 27 chain 500632 chr3 198022430 + 21596712 21603097 L1PA7 6471 - 1 6471 6801 12 0 2 140 8 7 68 0 4 348 0 1 186 1 2 68 23 8 21 0 4 557 9 8 40 0 48 124 0 4 149 0 4 68 1 2 74 0 2 57 1 2 134 0 1 248 1 2 4 1 0 34 0 3 224 1 0 29 0 10 147 0 1 44 0 3 26 9 13 34 11 0 80 0 1 317 1 5 169 0 6 35 0 4 111 22 0 72 3 5 57 7 0 80 0 3 156 0 2 144 0 5 515 8 12 485 0 4 18 1 5 24 1 11 285 11 10 100 2 1 125 7 8 138 5 6 34 0 1 62 1 0 407 chain 62719 chr3 198022430 + 21610490 21611186 L1P1 4361 - 1654 2350 51578 696 chain 33181 chr3 198022430 + 21611186 21611557 L1PA3long 6157 + 5783 6155 78936 225 3 4 143 chain 2947 chr3 198022430 + 21625960 21625991 U2 167 - 136 167 226133 31 chain 38684 chr3 198022430 + 21641315 21641840 MER41A 554 + 13 545 71170 16 3 0 165 1 5 140 1 0 4 0 1 11 0 2 111 23 27 50 chain 29824 chr3 198022430 + 21644005 21644324 AluYb8 318 - 0 318 85366 192 1 0 126 chain 24270 chr3 198022430 + 21651980 21652282 AluY 311 + 0 294 108844 126 4 0 154 5 1 13 chain 8995 chr3 198022430 + 21655570 21655687 MLT1B 390 - 0 118 165629 68 0 1 49 chain 99804 chr3 198022430 + 21677070 21679083 L1PB1 5432 - 3 1437 36827 6 1 0 19 1 0 9 0 3 19 0 1 26 2 0 15 7 4 19 20 7 21 1 0 44 1 0 15 2 1 52 2 0 6 20 12 5 0 3 4 1 0 24 5 0 6 2 5 144 3 4 140 0 8 12 10 0 23 540 0 64 0 1 86 14 12 231 14 13 196 1 0 4 12 6 164 chain 20858 chr3 198022430 + 21689568 21689918 THE1D 372 + 0 348 124435 13 0 2 39 9 0 43 1 0 5 1 0 26 0 4 24 35 37 81 1 0 44 1 3 27 chain 73032 chr3 198022430 + 21740094 21740990 L1PA7 6471 + 5574 6470 47009 27 15 13 87 0 2 7 11 8 187 0 3 562 chain 23811 chr3 198022430 + 21742663 21743003 THE1A 353 - 12 353 111409 27 0 11 88 19 10 95 5 4 106 chain 124219 chr3 198022430 + 21743010 21744574 THE1A-int 1579 - 7 1579 29614 106 0 1 145 0 1 328 5 6 114 5 7 169 0 1 298 0 1 224 2 1 42 12 14 114 chain 27336 chr3 198022430 + 21744574 21744928 THE1A 353 - 0 353 95157 155 1 0 45 0 1 41 1 0 111 chain 19659 chr3 198022430 + 21758338 21758605 AluSc 308 + 5 261 128220 133 26 15 108 chain 417214 chr3 198022430 + 21764624 21769771 L1PA7 6471 + 1284 6454 9598 386 1 0 63 0 4 528 1 0 238 16 18 111 33 0 75 0 1 357 0 1 694 0 1 43 7 8 194 0 4 654 0 4 104 0 3 537 2 1 301 0 3 17 0 1 77 0 3 127 3 5 251 0 28 156 1 2 170 chain 3229 chr3 198022430 + 21781773 21781851 MER5A1 166 + 5 81 220446 14 30 28 34 chain 10688 chr3 198022430 + 21810489 21810612 L1PA5 6144 - 2132 2255 156406 123 chain 188100 chr3 198022430 + 21810612 21812742 L1PA5 6144 + 4018 6144 20230 183 1 0 146 1 0 776 1 0 762 1 0 259 chain 11990 chr3 198022430 + 21829322 21829463 AluYc 301 + 160 298 152244 110 3 0 28 chain 23494 chr3 198022430 + 21833254 21833524 AluSc5 308 - 38 308 113154 270 chain 13363 chr3 198022430 + 21851853 21852021 L1PA6 6164 + 5991 6161 146838 17 1 3 150 chain 510449 chr3 198022430 + 21853722 21859809 L1PA5 6144 + 0 6121 6124 135 62 76 374 0 2 578 13 4 668 0 3 343 0 16 115 0 1 691 1 0 188 0 1 72 0 4 411 1 0 201 0 2 459 0 4 9 8 0 292 1 2 495 0 1 155 0 9 247 0 1 93 4 0 333 8 6 130 chain 5138 chr3 198022430 + 21871244 21871321 MADE1 96 + 3 96 193687 20 6 22 51 chain 10120 chr3 198022430 + 21927455 21927598 MLT2D 439 - 299 439 159993 40 8 5 95 chain 9525 chr3 198022430 + 21944227 21944348 L1PA3long 6157 + 6042 6157 162958 51 6 0 64 chain 25558 chr3 198022430 + 21962430 21962735 AluY 311 + 5 303 101941 126 8 0 8 0 1 163 chain 19422 chr3 198022430 + 21964531 21964749 L1PA5 6144 - 4 222 128891 218 chain 37869 chr3 198022430 + 21967631 21968108 L1PA7 6471 - 4 481 72321 146 23 24 97 1 0 210 chain 26200 chr3 198022430 + 21973371 21973686 AluYk4 311 + 0 309 99205 75 6 0 234 chain 164887 chr3 198022430 + 21991051 21993089 L1PA7 6471 - 1 2047 22667 12 0 2 4 1 0 731 3 0 6 0 3 12 0 2 69 5 8 143 0 5 287 15 16 196 9 10 9 1 0 390 17 13 128 chain 22804 chr3 198022430 + 21998768 21999050 THE1A-int 1579 + 0 284 116556 15 0 2 267 chain 556128 chr3 198022430 + 22024659 22030669 L1PA2 6032 - 4 6029 709 5797 0 15 213 chain 20535 chr3 198022430 + 22038564 22038800 L1PA5 6144 + 5708 5944 125529 236 chain 16663 chr3 198022430 + 22038801 22039003 L1PA5 6144 + 5944 6142 136499 191 4 0 7 chain 20225 chr3 198022430 + 22041841 22042097 MER41A 554 + 217 467 126452 152 5 0 32 2 1 65 chain 20724 chr3 198022430 + 22046050 22046501 MER4A1 472 + 55 450 124880 44 84 0 38 0 5 50 0 1 23 38 59 91 0 3 5 3 0 12 27 28 36 chain 30246 chr3 198022430 + 22065420 22065879 MLT2A1 477 + 6 477 84066 53 2 0 83 0 1 25 1 5 22 6 6 6 2 0 186 29 37 27 1 0 10 0 4 6 chain 425504 chr3 198022430 + 22065879 22071360 HERVL-int 5654 + 0 5654 9406 24 0 8 110 111 0 265 0 1 149 1 2 146 0 1 160 0 5 78 0 2 383 0 13 274 32 0 35 19 17 69 0 4 152 0 1 4 0 2 62 0 3 667 10 256 613 0 4 44 0 8 114 5 6 229 0 4 75 5 6 696 34 34 175 0 3 377 1 0 61 0 3 91 0 1 37 0 1 102 0 6 71 chain 27289 chr3 198022430 + 22071360 22071744 MLT2A1 477 + 0 383 95311 42 2 0 17 2 0 83 0 1 26 1 5 21 20 18 170 chain 100516 chr3 198022430 + 22078217 22079340 L1PA4 6152 - 12 1140 36625 300 0 1 531 0 4 292 chain 23758 chr3 198022430 + 22079340 22079599 L1PA4 6152 + 4760 5019 111184 259 chain 290569 chr3 198022430 + 22094687 22097779 L1HS 6032 + 2940 6032 13985 3092 chain 422328 chr3 198022430 + 22123573 22181268 L1PA5 6144 + 0 6144 9480 129 1 15 794 1 0 14 25 0 123 7 4 86 13 4 58 0 1 171 0 1 761 0 1 32 0 2 39 0 1 78 0 1 163 1 0 106 0 3 161 0 1 316 5 3 43 14 12 87 7 11 284 51595 0 378 0 2 456 0 4 1026 0 53 608 1 0 112 chain 114160 chr3 198022430 + 22127180 22128565 L1PA5 6144 + 3615 6129 33048 268 0 2 456 0 4 223 11 1129 402 0 5 25 chain 79053 chr3 198022430 + 22141451 22142335 L1PA3long 6157 + 5273 6157 44029 530 1 0 187 0 1 166 chain 9492 chr3 198022430 + 22151091 22151200 L1P3 4156 - 1296 1405 163110 109 chain 94294 chr3 198022430 + 22151206 22152282 L1PA4 6152 + 5076 6143 38264 147 1 0 32 12 0 51 0 4 833 chain 183373 chr3 198022430 + 22219078 22221196 L1PA4 6152 - 0 2119 20643 13 0 3 5 1 0 285 1 0 538 0 4 85 1 0 142 3 0 80 1 2 641 1 0 321 chain 97203 chr3 198022430 + 22221196 22222325 L1PA4 6152 + 2905 4036 37438 476 0 1 130 17 18 506 chain 74205 chr3 198022430 + 22241745 22242784 MER11C 1089 - 33 1089 46410 92 0 1 171 8 0 11 0 8 35 0 1 38 1 0 7 4 8 89 8 6 16 40 41 215 23 27 35 5 14 241 chain 89820 chr3 198022430 + 22255541 22256612 MER11C 1089 + 0 1073 39716 234 16 18 315 2 1 23 0 1 84 1 0 227 0 1 169 chain 23327 chr3 198022430 + 22256673 22256940 MER11C 1089 + 300 567 114049 267 chain 9358 chr3 198022430 + 22256942 22257049 MER11C 1089 + 568 676 163766 25 0 1 82 chain 8592 chr3 198022430 + 22257051 22257165 MER11C 1089 + 677 783 167778 99 8 0 7 chain 24506 chr3 198022430 + 22257166 22257447 MER11C 1089 + 792 1073 107513 281 chain 30293 chr3 198022430 + 22273890 22274269 L1PA7 6471 - 12 392 83952 62 4 0 83 5 6 202 0 4 23 chain 22982 chr3 198022430 + 22283458 22283730 L1PA2 6032 + 5760 6032 115709 106 5 0 7 0 5 154 chain 20544 chr3 198022430 + 22301703 22301998 L1PA8 5853 + 5567 5847 125490 43 2 0 42 10 1 26 1 0 8 5 4 49 2 1 18 2 1 87 chain 38853 chr3 198022430 + 22324225 22324880 L1PB1 5432 + 1353 2022 70939 31 13 17 9 1 0 8 1 5 151 14 16 91 11 13 38 1 0 7 16 17 51 4 6 40 7 8 70 0 27 8 27 0 56 chain 89257 chr3 198022430 + 22353905 22354905 L1PA4 6152 + 5152 6152 39906 220 0 1 379 0 3 131 1 0 6 0 1 253 4 0 6 chain 19801 chr3 198022430 + 22355626 22356031 L1PB1 5432 - 5 372 127812 5 2 0 17 3 2 12 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 16 6 7 4 0 15 1 0 44 1 0 14 3 2 53 2 0 6 7 3 12 1 0 12 1 0 11 0 3 6 1 0 9 7 2 43 chain 28781 chr3 198022430 + 22417271 22417583 AluYb8 318 - 6 318 89978 312 chain 27180 chr3 198022430 + 22429121 22429417 L1PA4 6152 + 5850 6146 95659 296 chain 179528 chr3 198022430 + 22436770 22438818 L1PA4 6152 - 9 2065 21027 452 4 0 269 0 7 107 0 4 752 0 1 464 chain 436421 chr3 198022430 + 22450293 22455785 L1PA8 5853 - 208 5745 9154 35 2 0 324 5 9 182 1 2 86 0 1 446 6 23 477 0 4 144 13 17 252 0 1 214 37 15 24 1 0 380 0 1 47 0 4 24 0 4 68 0 6 53 1 5 108 1 0 84 1 5 220 1 0 99 4 5 248 1 4 150 1 0 33 1 2 20 0 3 6 3 0 259 0 5 124 0 1 275 0 1 193 0 1 92 0 1 493 0 1 55 0 4 88 1 0 109 chain 4451 chr3 198022430 + 22458972 22459027 LTR12C 1709 + 873 928 130068 55 chain 26804 chr3 198022430 + 22459027 22459371 LTR12C 1709 + 650 1035 96971 156 0 1 30 1 0 140 1 42 16 chain 46031 chr3 198022430 + 22475299 22475791 L1PA2 6032 + 5536 6028 62013 492 chain 4068 chr3 198022430 + 22482804 22482979 L1MC4 1079 + 766 945 206337 17 4 0 25 104 112 25 chain 10388 chr3 198022430 + 22483283 22483586 THE1B 368 + 0 306 158751 12 3 1 7 5 0 11 28 34 17 24 0 8 0 24 48 63 68 12 2 1 63 chain 80835 chr3 198022430 + 22487078 22487988 L1PA4 6152 - 3071 3982 43230 760 1 2 149 chain 274756 chr3 198022430 + 22487988 22491381 L1PA4 6152 + 3074 6152 14937 97 1 0 1154 315 0 784 0 1 1042 chain 20343 chr3 198022430 + 22511094 22511344 L1PA7 6471 + 6205 6456 126088 115 1 2 134 chain 7503 chr3 198022430 + 22524060 22524143 L1PA4 6152 + 4171 4254 174138 83 chain 169671 chr3 198022430 + 22524143 22526031 L1PA4 6152 + 4255 6143 22095 1888 chain 21216 chr3 198022430 + 22537873 22538157 L1PA8 5853 - 0 278 123155 93 1 0 19 2 1 50 1 0 8 1 0 74 3 1 32 chain 18148 chr3 198022430 + 22551468 22551708 L1PA7 6471 - 5 244 132464 7 2 0 178 8 9 45 chain 45089 chr3 198022430 + 22558399 22559035 HERVL-int 5654 + 1693 5654 62953 380 0 9 75 0 3 104 2 3315 75 chain 19249 chr3 198022430 + 22559035 22559372 MLT2A2 560 + 0 505 129378 92 0 57 34 2 0 13 37 36 70 5 114 37 5 10 42 chain 25139 chr3 198022430 + 22559495 22559854 L1MA2 4263 + 3232 3584 104075 287 8 5 25 5 4 12 3 0 19 chain 23049 chr3 198022430 + 22562675 22562964 L1PA6 6164 + 5869 6159 115397 130 4 5 155 chain 84569 chr3 198022430 + 22569567 22570592 L1PA7 6471 - 9 1037 41692 39 4 5 4 1 0 795 1 4 181 chain 72608 chr3 198022430 + 22574211 22575044 L1PA5 6144 + 5300 6135 47211 471 0 1 119 1 0 110 7 9 125 chain 92897 chr3 198022430 + 22595779 22596826 L1PA4 6152 + 5109 6152 38689 269 2 0 114 0 1 653 3 0 6 chain 55476 chr3 198022430 + 22652308 22652952 L1PA7 6471 + 5824 6467 55427 312 2 0 195 0 1 135 chain 272827 chr3 198022430 + 22665642 22669474 L1PA10 4194 - 33 4019 15026 11 1 0 34 3 0 498 0 1 223 5 7 171 0 3 162 0 1 9 19 0 18 0 219 96 2 0 84 0 1 76 13 1 15 0 11 173 1 2 56 1 2 61 0 4 112 4 5 301 0 1 278 9 12 244 0 1 150 1 2 152 9 21 8 12 0 451 2 0 75 23 17 12 1 0 10 9 7 9 1 0 19 3 1 17 49 23 8 1 0 11 10 8 17 1 0 9 1 0 10 2 0 8 38 29 8 4 0 11 chain 482763 chr3 198022430 + 22679102 22685385 L1PA7 6471 - 10 6466 7632 580 1 2 168 2 1 6 0 1 81 2 0 57 24 3 123 6 4 238 7 11 514 0 4 270 0 1 514 1 4 119 0 3 49 0 10 205 9 9 21 4 5 358 0 4 455 15 0 18 11 16 216 3 4 402 0 1 91 0 12 33 15 10 66 14 13 545 0 4 342 0 1 114 2 1 175 3 0 65 56 226 75 11 10 29 6 5 162 chain 1450 chr3 198022430 + 22685852 22686195 L1PB 1623 - 140 450 124248 29 6 4 107 43 27 14 18 0 16 0 1 104 0 2 6 chain 82745 chr3 198022430 + 22688164 22689492 L1MA1 4479 - 374 1645 42440 25 7 6 106 39 21 46 7 6 36 1 0 11 5 3 17 1 0 30 12 1 42 1 0 16 2 0 25 1 0 32 12 8 127 0 1 34 2 0 116 0 3 129 3 0 13 1 0 73 4 0 21 24 22 26 0 1 4 3 0 119 2 0 27 3 2 90 1 0 32 chain 528 chr3 198022430 + 22690674 22690799 L1PB 1623 - 755 880 124248 125 chain 103277 chr3 198022430 + 22691868 22693210 L1PB1 5432 + 3741 5103 35929 221 18 20 563 0 1 4 1 0 79 8 11 165 2 10 176 3 6 90 0 4 12 chain 20801 chr3 198022430 + 22695800 22696147 THE1B 368 - 0 355 124595 20 0 1 28 14 13 42 2 0 21 43 54 17 1 0 159 chain 10684 chr3 198022430 + 22714635 22714834 MSTA 426 + 1 212 157477 93 55 67 51 chain 16096 chr3 198022430 + 22728353 22728678 L1MA2 4263 + 3810 4114 138073 87 84 81 80 7 0 16 10 0 32 1 0 8 chain 236002 chr3 198022430 + 22729037 22731669 L1PA3long 6157 + 3521 6157 16978 111 0 1 423 6 8 1878 0 1 214 chain 14727 chr3 198022430 + 22731700 22731876 MER1A 529 + 251 427 142177 176 chain 62917 chr3 198022430 + 22748131 22749001 L1P2 5180 - 4303 5177 51481 84 1 0 6 1 0 150 6 10 112 1 0 8 1 0 107 26 33 120 1 0 53 2 1 42 2 1 147 chain 444169 chr3 198022430 + 22749320 22754532 L1PA6 6164 + 914 6158 8926 44 3 0 31 0 1 259 0 21 17 3 0 174 2 1 146 0 1 720 1 2 186 0 1 220 0 2 449 0 1 213 0 1 266 0 1 224 0 1 168 6 8 290 0 4 224 0 1 1243 0 1 323 chain 510595 chr3 198022430 + 22779552 22785245 L1PA3long 6157 - 323 6156 6111 2692 0 2 46 0 1 853 0 1 1241 0 3 91 8 136 525 1 5 85 0 1 151 chain 163669 chr3 198022430 + 22790878 22792845 L1PA7 6471 - 3 1991 22850 12 1 6 747 1 0 25 0 3 72 0 4 174 0 1 424 0 3 112 0 1 212 0 4 124 0 1 63 chain 172944 chr3 198022430 + 22796768 22799106 L1PB1 5432 + 3103 5420 21715 23 0 1 115 10 7 485 0 2 30 0 1 239 1 5 598 8 14 480 13 11 24 1 0 7 18 13 9 2 0 51 8 7 12 1 0 42 41 29 19 8 5 16 2 0 22 1 0 19 17 15 16 chain 116291 chr3 198022430 + 22823420 22824984 THE1B-int 1605 - 0 1605 32345 216 9 13 28 1 0 7 6 7 26 5 6 20 5 6 86 0 7 148 4 3 6 0 1 317 0 3 5 5 11 227 5 30 53 24 18 361 chain 554556 chr3 198022430 + 22842869 22848894 L1PA2 6032 + 2 6032 878 916 1 0 3728 4 9 550 0 3 817 2 0 7 chain 435299 chr3 198022430 + 22868567 22873875 L1PA7 6471 + 1070 6438 9188 109 2 0 13 14 4 215 8 10 266 0 1 621 5 4 157 9 0 7 1 10 154 8 1 76 0 1 377 0 4 33 0 2 356 1 0 6 1 0 149 4 0 506 0 14 41 1 2 804 5 63 348 0 1 189 0 2 822 chain 47243 chr3 198022430 + 22883787 22884447 L1PA11 4918 - 415 1047 61005 14 1 0 15 3 1 94 25 0 48 1 0 29 7 8 423 chain 58298 chr3 198022430 + 22889716 22890360 L1PA3long 6157 - 900 1545 53807 113 0 1 531 chain 80942 chr3 198022430 + 22890360 22891252 L1PA3long 6157 + 5264 6156 43221 892 chain 60898 chr3 198022430 + 22891361 22892038 L1PA3long 6157 + 5480 6157 52387 677 chain 11845 chr3 198022430 + 22894998 22895139 THE1B-int 1605 - 1464 1605 152852 141 chain 76289 chr3 198022430 + 22896924 22897803 L1P1 4361 - 38 915 45315 18 1 0 155 1 0 704 chain 35396 chr3 198022430 + 22897808 22898226 L1PA5 6144 + 5728 6142 75678 407 4 0 7 chain 107489 chr3 198022430 + 22971668 22973049 L1PA8 5853 + 4474 5853 34847 532 5 6 70 0 2 309 0 2 169 1 0 41 5 3 70 4 3 8 1 0 40 17 16 10 3 0 5 0 2 91 chain 24292 chr3 198022430 + 22987494 22987763 AluYk4 311 + 2 272 108694 106 0 1 163 chain 177165 chr3 198022430 + 22994907 22996918 L1PA4 6152 - 6 2016 21235 327 2 1 65 0 1 133 1 0 235 1 0 248 0 1 881 3 2 86 0 1 29 chain 3207 chr3 198022430 + 23010954 23010989 MLT1G 592 - 199 234 220773 35 chain 5534 chr3 198022430 + 23013355 23013429 MADE1 96 - 4 94 189721 33 1 0 4 0 17 36 chain 155898 chr3 198022430 + 23015682 23018113 L1PB1 5432 + 3336 5404 23869 292 7 8 100 2 1 158 1 0 272 0 4 39 0 1 398 0 4 15 3 0 475 334 3 8 3 0 24 1 0 9 32 25 48 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 14 2 0 10 4 0 14 1 0 14 8 7 13 chain 3393 chr3 198022430 + 23047838 23047884 MER20 218 + 44 89 217229 41 1 0 4 chain 512824 chr3 198022430 + 23071912 23078017 L1PA6 6164 - 2 6164 5898 1441 0 1 355 0 4 661 1 2 174 0 1 333 0 1 4 2 3 6 0 2 24 0 5 368 0 1 442 2 3 517 0 4 413 0 1 745 6 0 47 0 1 36 1 0 450 9 49 68 chain 221130 chr3 198022430 + 23086325 23090776 L1PA13 3608 + 86 3548 17806 4 1 0 19 6 4 16 12 9 26 2 1 12 3 0 24 30 19 58 1 2 9 8 6 120 1 0 12 1 0 15 5 3 15 8 3 19 1 0 16 3 1 17 2 0 16 1 0 32 294 0 66 2 0 108 19 20 115 40 26 49 807 136 61 0 5 86 0 11 31 0 7 166 6 15 44 3 7 133 0 3 175 0 1 132 0 4 49 6 17 309 1 4 504 23 25 12 21 20 227 1 0 28 1 0 114 2 0 61 1 0 56 8 5 45 14 10 17 1 0 20 6 3 13 5 0 13 29 19 12 chain 25406 chr3 198022430 + 23086860 23087134 AluYa5 310 - 0 272 102655 184 2 0 88 chain 327615 chr3 198022430 + 23098157 23102114 L1PA6 6164 - 8 4028 12286 527 3 13 143 6 10 142 1 6 143 0 5 306 0 10 392 0 1 92 6 10 483 0 3 569 0 1 30 0 4 16 6 10 50 0 1 319 8 17 76 0 1 188 0 1 451 chain 29267 chr3 198022430 + 23102114 23102475 L1PA5 6144 + 5777 6144 87703 340 0 6 21 chain 131392 chr3 198022430 + 23102532 23104108 L1P2 5180 - 3040 4634 27779 690 1 0 4 1 0 87 0 1 100 0 1 170 0 3 286 0 15 122 0 1 95 1 0 19 chain 28836 chr3 198022430 + 23105126 23105454 L1PA4 6152 - 6 334 89739 328 chain 7668 chr3 198022430 + 23105454 23105535 L1PA4 6152 + 5676 5757 173117 81 chain 40995 chr3 198022430 + 23105660 23106205 MLT2A2 560 + 0 560 67914 190 0 10 7 11 2 121 0 1 68 3 14 122 0 2 23 chain 14957 chr3 198022430 + 23111551 23111731 LTR62 707 + 407 592 141455 15 0 1 43 0 4 122 chain 521838 chr3 198022430 + 23129076 23134950 L1PA4 6152 - 271 6151 4978 561 0 1 17 0 4 193 0 1 619 0 2 755 0 1 550 1 0 1106 0 2 1533 4 0 535 chain 2989 chr3 198022430 + 23144691 23144730 MER5C1 258 - 149 188 225262 39 chain 23854 chr3 198022430 + 23149188 23149471 AluSp 311 + 11 294 111156 283 chain 46921 chr3 198022430 + 23181893 23182442 L1PA7 6471 + 5772 6320 61290 540 1 0 8 chain 11865 chr3 198022430 + 23182442 23182592 L1PA7 6471 + 6321 6468 152763 140 3 0 7 chain 7786 chr3 198022430 + 23183240 23183342 L1PA16 3655 + 3402 3506 172381 16 1 3 85 chain 108888 chr3 198022430 + 23185217 23186519 L1PA6 6164 + 4852 6162 34465 332 10 15 123 0 3 501 0 1 148 1 2 5 1 0 28 0 1 142 2 0 9 chain 83519 chr3 198022430 + 23307211 23308140 L1P1 4361 - 1792 2726 42110 723 0 5 206 chain 156398 chr3 198022430 + 23308140 23309908 L1P1 4361 + 2576 4341 23811 1574 1 0 155 1 0 23 2 1 12 chain 3671 chr3 198022430 + 23313120 23313160 LTR12C 1709 - 981 1021 212372 40 chain 8017 chr3 198022430 + 23315297 23315397 HY3 101 + 0 98 170948 16 2 0 82 chain 7371 chr3 198022430 + 23320985 23321080 LTR51 675 - 239 332 174971 88 2 0 5 chain 490330 chr3 198022430 + 23337826 23343396 L1PA4 6152 - 19 6151 7348 125 1 8 1151 3 26 1560 0 5 944 0 1 1251 7 9 15 1 0 4 0 1 287 3 2 121 0 525 97 chain 50687 chr3 198022430 + 23352364 23352963 L1PA5 6144 - 14 599 58510 505 18 4 76 chain 18728 chr3 198022430 + 23359956 23360320 THE1B 368 - 12 368 130885 37 14 13 66 53 56 6 0 2 23 19 6 30 5 6 111 chain 7062 chr3 198022430 + 23362357 23362586 MLT1C 463 - 1 240 177015 63 8 9 12 106 115 40 chain 65350 chr3 198022430 + 23368166 23368911 L1PA5 6144 - 0 745 50398 745 chain 51532 chr3 198022430 + 23388595 23389195 L1PA6 6164 + 5555 6156 57941 72 0 1 528 chain 4021 chr3 198022430 + 23389462 23389505 L1PA6 6164 + 6119 6162 207063 43 chain 553542 chr3 198022430 + 23390741 23396876 L1PA3long 6157 + 6 6157 1001 2182 0 2 96 0 1 352 0 1 1256 1 0 1263 0 5 140 0 4 794 0 4 51 chain 44356 chr3 198022430 + 23402317 23402956 L1PB2 3958 + 3210 3838 63745 82 0 4 13 2 0 52 1 0 78 2 0 9 9 5 24 0 1 6 2 1 132 1 0 62 1 0 66 1 0 10 2 0 16 6 5 62 chain 39300 chr3 198022430 + 23420734 23421161 L1PA2 6032 - 0 427 70321 427 chain 17568 chr3 198022430 + 23454498 23454697 L1PA4 6152 + 5952 6151 134078 199 chain 42343 chr3 198022430 + 23457236 23457735 L1PA7 6471 - 4 500 66215 6 4 0 466 0 1 23 chain 183055 chr3 198022430 + 23457735 23459985 L1P3 4156 - 1885 4150 20677 106 1 0 4 0 1 282 1 3 385 0 1 275 0 4 227 5 0 224 1 0 38 2 0 7 1 2 32 0 1 31 1 0 247 0 1 78 1 0 71 1 0 93 0 15 122 0 1 14 chain 11175 chr3 198022430 + 23462797 23462960 L1PB4 2604 + 2293 2452 155542 84 13 9 66 chain 23077 chr3 198022430 + 23481496 23481783 AluSg4 309 + 16 297 115266 47 4 0 229 2 0 5 chain 6323 chr3 198022430 + 23498931 23499017 Tigger1 2417 - 1460 1546 182621 65 0 3 7 3 0 11 chain 58544 chr3 198022430 + 23514938 23515838 L1PB1 5432 - 5 914 53677 5 2 0 18 1 0 13 1 0 21 1 0 23 3 1 15 7 4 30 15 1 15 1 0 36 13 12 12 2 1 43 0 23 8 1 0 8 1 0 21 3 0 7 6 7 28 0 1 174 1 3 83 1 0 15 0 15 165 21 20 53 0 1 27 chain 16930 chr3 198022430 + 23529696 23529945 L1PA7 6471 - 1 242 135771 12 1 0 40 3 1 81 14 13 9 3 0 4 1 0 81 chain 39989 chr3 198022430 + 23551074 23551531 L1PA5 6144 - 4 461 69334 457 chain 116486 chr3 198022430 + 23584654 23587447 L1PB3 3668 + 1803 3614 32284 309 1 0 6 5 0 63 18 10 7 0 2 267 0 2 78 0 4 110 19 18 36 11 13 105 0 4 151 0 2 15 3 4 131 62 64 58 11 16 13 1 0 14 968 0 61 1 0 25 1 0 87 20 4 18 1 0 4 1 0 6 18 19 37 7 3 14 1 0 12 4 6 13 chain 74388 chr3 198022430 + 23586153 23587116 LTR5_Hs 974 - 0 974 46322 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 181 0 1 118 1 0 79 0 2 68 0 4 14 chain 312469 chr3 198022430 + 23601557 23605067 L1PA5 6144 - 4 3511 12915 143 6 0 620 1 0 304 3 0 728 0 4 1644 0 3 61 chain 10748 chr3 198022430 + 23618419 23618604 Tigger1 2417 + 54 255 157209 20 25 34 24 5 6 46 0 6 65 chain 13098 chr3 198022430 + 23619548 23619769 L1PA11 4918 + 4283 4508 147857 48 5 11 48 20 17 19 0 3 19 1 2 24 2 0 14 1 0 20 chain 106679 chr3 198022430 + 23624396 23625834 L1PA15 4387 - 681 2135 35073 538 2 1 93 2 6 119 8 18 47 5 11 6 6 0 215 6 6 41 9 7 138 0 3 44 1 0 4 4 7 150 chain 23046 chr3 198022430 + 23638734 23639004 AluY 311 + 16 284 115414 117 2 0 151 chain 9529 chr3 198022430 + 23646917 23647072 MLT1A0 366 + 179 363 162935 23 26 55 106 chain 3089 chr3 198022430 + 23648851 23648885 MADE1 96 - 61 95 223104 34 chain 123488 chr3 198022430 + 23658718 23660478 L1PA8A 6298 + 4632 6291 29884 140 38 31 398 0 14 273 0 7 367 130 40 10 0 9 33 9 0 238 3 2 10 23 2 31 3 0 54 chain 4108 chr3 198022430 + 23660019 23660064 L1PA8A 6298 + 5947 5992 204559 45 chain 163346 chr3 198022430 + 23692928 23694801 L1PA5 6144 + 4251 6132 22900 318 0 1 377 0 12 293 5 0 880 chain 6445 chr3 198022430 + 23729712 23729857 Tigger1 2417 - 122 221 181677 46 2 0 6 0 4 9 48 0 34 chain 24581 chr3 198022430 + 23734857 23735128 AluY 311 + 36 307 107078 271 chain 3513 chr3 198022430 + 23739397 23739436 MER5A 189 + 1 40 215168 39 chain 24558 chr3 198022430 + 23748107 23748403 AluSp 311 + 5 301 107204 296 chain 10337 chr3 198022430 + 23795900 23796043 L1MB3 1562 - 137 280 158952 4 1 0 70 1 0 30 4 6 33 chain 5688 chr3 198022430 + 23810148 23810228 L1MB5 1630 + 1366 1445 188212 26 2 1 52 chain 10247 chr3 198022430 + 23815827 23815957 MER47A 366 + 170 301 159387 125 0 1 5 chain 23422 chr3 198022430 + 23828029 23828317 AluSp 311 - 15 311 113521 18 1 9 269 chain 4669 chr3 198022430 + 23867479 23867534 FAM 185 + 93 148 198874 55 chain 45928 chr3 198022430 + 23890844 23891440 L1PA8 5853 - 0 590 62104 92 2 1 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 177 0 1 123 chain 25079 chr3 198022430 + 23905025 23905320 AluSp 311 - 16 311 104410 295 chain 154118 chr3 198022430 + 23912190 23913892 SVA_D 2077 - 21 2060 24082 574 0 147 124 2 0 108 1 187 861 0 1 11 0 5 21 chain 5335 chr3 198022430 + 23923750 23923814 LTR12C 1709 - 872 936 191688 64 chain 24309 chr3 198022430 + 23973917 23974199 AluSp 311 + 20 302 108605 282 chain 3620 chr3 198022430 + 23974657 23974703 MLT1D 503 + 457 503 213341 46 chain 7523 chr3 198022430 + 23977919 23978416 MER5A 189 - 7 183 174023 47 23 24 15 346 26 59 2 0 5 chain 25461 chr3 198022430 + 23984733 23985021 AluSp 311 - 22 311 102404 147 0 1 141 chain 37692 chr3 198022430 + 24068021 24068456 L1PA7 6471 - 10 445 72565 435 chain 9703 chr3 198022430 + 24093584 24093700 L1PA4 6152 - 9 125 162075 116 chain 58688 chr3 198022430 + 24094274 24094964 L1PA5 6144 - 0 678 53586 80 15 1 257 0 1 59 0 1 279 chain 448799 chr3 198022430 + 24094988 24100351 L1PA3long 6157 - 5 5364 8796 355 1 2 1534 0 1 509 0 1 52 2 0 515 1 0 744 1 3 1111 149 141 303 0 2 86 chain 11550 chr3 198022430 + 24112185 24112377 L1PA15 4387 - 71 254 154102 46 17 14 39 15 10 22 1 0 52 chain 24467 chr3 198022430 + 24113250 24113532 L1PA5 6144 - 1 284 107723 76 0 1 206 chain 320952 chr3 198022430 + 24114589 24119292 L1PB1 5432 - 14 4335 12561 14 5 4 5 0 3 22 1 0 24 2 0 14 10 13 11 19 7 21 1 0 43 1 0 16 2 1 53 27 20 9 1 0 20 17 15 50 2 1 217 34 23 133 1 0 46 1 0 12 8 6 21 0 1 378 1 0 259 1 0 191 37 10 18 0 1 100 10 9 363 0 1 100 7 14 57 0 1 46 0 1 202 2 0 181 9 0 316 0 1 84 310 2 118 0 11 68 1 0 134 0 1 240 4 0 81 0 4 183 31 16 7 1 0 178 8 9 55 6 3 53 chain 498896 chr3 198022430 + 24120443 24126062 L1PA4 6152 - 1 6149 6905 856 1 0 93 0 7 2882 2 1 1582 1 0 107 0 525 95 chain 13734 chr3 198022430 + 24130194 24130380 MER30 238 - 0 201 145490 46 3 0 63 6 24 68 chain 559583 chr3 198022430 + 24130949 24136982 L1PA2 6032 - 0 6032 383 2971 1 0 3061 chain 3799 chr3 198022430 + 24139948 24139990 L1ME1 1623 - 205 247 210402 42 chain 23386 chr3 198022430 + 24150756 24151045 L1PA7 6471 - 4 312 113728 8 2 0 95 0 21 184 chain 26930 chr3 198022430 + 24151045 24151374 L1PA7 6471 + 5714 6046 96513 116 0 3 213 chain 5032 chr3 198022430 + 24201158 24201217 MER20 218 + 22 81 194803 59 chain 9925 chr3 198022430 + 24215525 24215665 L1PA8 5853 - 0 138 160947 92 2 1 18 3 2 25 chain 33217 chr3 198022430 + 24235183 24235751 L1PB1 5432 + 4886 5422 78854 4 0 1 212 1 2 9 7 0 24 2 1 7 1 0 12 5 1 9 2 0 52 19 17 45 1 0 14 20 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 535834 chr3 198022430 + 24245024 24251311 L1PA5 6144 + 6 6130 3470 502 1 0 100 0 4 1207 0 3 1252 1 0 84 0 1 84 0 4 187 0 3 558 200 0 475 8 6 629 0 6 58 0 1 106 0 4 11 0 4 304 0 9 251 0 1 231 0 1 38 chain 21676 chr3 198022430 + 24257838 24258109 AluY 311 + 24 293 121485 99 6 4 166 chain 3440 chr3 198022430 + 24272639 24272678 MLT1K 546 + 507 546 216379 39 chain 3906 chr3 198022430 + 24299063 24299205 MER58A 224 - 32 182 208766 31 80 88 31 chain 493979 chr3 198022430 + 24321590 24327073 L1PA3long 6157 + 0 6147 7172 95 2 528 153 0 128 1108 1 4 1160 0 1 337 1 3 837 0 4 1789 chain 28423 chr3 198022430 + 24371514 24371819 AluYb8 318 + 0 303 91496 132 2 0 171 chain 24794 chr3 198022430 + 24374265 24374590 AluY 311 + 0 298 105920 127 28 0 79 0 1 91 chain 89812 chr3 198022430 + 24439723 24440729 L1PA5 6144 + 5134 6144 39719 163 0 4 843 chain 20135 chr3 198022430 + 24455063 24455303 L1PA5 6144 - 3 244 126727 150 1 2 89 chain 4365 chr3 198022430 + 24455304 24455354 L1PA5 6144 + 5783 5833 202390 50 chain 5047 chr3 198022430 + 24455360 24455417 L1PA5 6144 + 5838 5895 194659 57 chain 68682 chr3 198022430 + 24500455 24501323 L1PA7 6471 - 5 878 48949 177 0 1 27 0 3 53 18 8 65 0 1 431 0 2 69 0 5 7 1 4 20 chain 5274 chr3 198022430 + 24514813 24514873 L1PA7 6471 - 729 789 192267 60 chain 58586 chr3 198022430 + 24514873 24515609 L1PA7 6471 + 5753 6466 53649 359 3 4 136 16 1 54 18 11 141 2 0 7 chain 19100 chr3 198022430 + 24530484 24530755 AluSc5 308 + 20 299 129817 142 15 27 100 4 0 10 chain 27436 chr3 198022430 + 24552829 24553136 AluYa5 310 - 7 310 94859 52 4 0 251 chain 6750 chr3 198022430 + 24553283 24553391 MER5A1 166 + 56 165 179326 79 16 17 13 chain 502479 chr3 198022430 + 24608280 24614436 L1PA6 6164 + 46 6162 6701 111 0 1 213 29 36 102 2 1 50 0 1 235 1 18 439 0 1 169 10 5 6 0 6 62 0 1 709 0 2 111 0 1 190 6 5 331 33 0 300 0 3 161 0 1 61 3 7 189 0 1 1106 31 11 475 0 1 167 0 1 499 30 8 43 20 14 262 chain 14632 chr3 198022430 + 24634952 24635158 L1PA5 6144 - 0 195 142480 138 0 7 10 4 1 6 15 0 33 chain 9852 chr3 198022430 + 24667004 24667117 THE1B-int 1605 + 1492 1605 161336 113 chain 9529 chr3 198022430 + 24667583 24667792 THE1B 368 + 152 368 162933 24 1 0 25 79 87 80 chain 233995 chr3 198022430 + 24674756 24677569 L1PA8 5853 - 0 2825 17090 93 1 0 19 2 1 44 21 19 69 2 0 44 1 0 48 0 1 260 0 1 116 0 1 49 0 1 78 0 2 484 0 2 331 0 2 317 0 1 424 0 8 410 chain 37859 chr3 198022430 + 24677569 24678088 L1PA8 5853 + 2496 3019 72125 339 0 1 33 1 2 17 1 0 16 3 4 6 2 0 20 0 4 20 6 4 8 0 2 47 chain 513558 chr3 198022430 + 24734625 24741419 L1PA7 6471 - 10 6471 5827 138 2 3 12 1 0 282 0 2 6 0 1 132 0 1 181 2 1 81 1 0 133 0 3 813 0 4 601 309 7 65 0 1 161 1 0 4 0 1 331 31 17 29 0 1 157 20 2 415 0 1 235 23 7 1058 0 5 270 7 7 413 0 1 162 41 39 236 36 30 25 6 1 9 12 13 62 7 12 9 0 6 275 chain 29541 chr3 198022430 + 24819526 24819836 AluYa5 310 - 0 310 86463 310 chain 20725 chr3 198022430 + 24821339 24821705 THE1D 372 - 0 372 124878 27 16 9 97 3 8 34 27 25 69 21 31 72 chain 69339 chr3 198022430 + 24945814 24946636 L1PA7 6471 + 5621 6469 48663 616 5 4 55 0 27 146 chain 486175 chr3 198022430 + 25017265 25023410 L1PA6 6164 - 2 6164 7515 835 1 2 5 0 5 15 0 4 977 1 0 17 0 9 399 0 3 193 3 0 392 1 0 55 8 12 36 0 4 8 11 8 592 12 27 224 41 6 310 19 24 278 1 0 252 8 15 34 0 4 15 16 11 106 0 1 101 0 1 378 0 17 220 1 0 117 19 0 16 1 7 427 chain 17823 chr3 198022430 + 25024878 25025116 L1PA8 5853 - 7 242 133329 85 2 1 19 2 1 10 0 1 41 1 0 6 1 0 71 chain 29763 chr3 198022430 + 25031271 25031589 AluYb8 318 - 0 318 85595 318 chain 20966 chr3 198022430 + 25031669 25031890 L1PA3long 6157 - 0 221 124051 221 chain 4068 chr3 198022430 + 25221378 25221424 MADE1 96 - 50 96 206349 46 chain 115131 chr3 198022430 + 25237564 25238942 L1PA5 6144 - 3 1385 32744 7 2 0 613 0 1 222 1 4 275 0 2 258 chain 522912 chr3 198022430 + 25240946 25247054 L1PA4 6152 - 1 6142 4877 112 0 1 34 4 11 676 7 11 284 0 1 533 0 12 801 5 1 119 0 1 351 2 1 122 0 1 534 4 7 130 0 1 709 3 6 262 0 1 97 0 3 1319 chain 3293 chr3 198022430 + 25247087 25247137 L1MA3 4352 + 4234 4282 219105 22 4 2 24 chain 25228 chr3 198022430 + 25257839 25258151 L1PA8A 6298 + 5943 6254 103601 204 1 3 42 3 0 62 chain 3200 chr3 198022430 + 25279272 25279312 MADE1 96 + 52 93 220932 13 0 1 27 chain 510046 chr3 198022430 + 25282808 25289268 L1PA7 6471 - 5 6468 6161 7 2 0 63 3 2 71 11 8 18 0 2 271 5 9 296 0 2 82 8 12 431 2 0 1144 5 4 461 0 1 34 0 4 47 19 13 587 1 8 247 0 2 115 0 1 295 0 1 199 1 0 59 14 0 662 8 11 291 1 0 4 0 1 375 6 7 202 8 9 405 chain 7701 chr3 198022430 + 25289389 25289497 L1MA4A 3247 - 2950 3054 172932 37 1 0 51 4 1 15 chain 3176 chr3 198022430 + 25310933 25310969 MIR 256 + 63 99 221398 36 chain 6399 chr3 198022430 + 25312298 25312379 MADE1 96 - 2 83 182032 81 chain 17767 chr3 198022430 + 25317213 25317419 L1PA5 6144 + 5931 6138 133523 44 0 1 162 chain 5199 chr3 198022430 + 25356421 25356484 L1PA16 3655 + 3440 3503 193034 63 chain 531577 chr3 198022430 + 25370049 25376176 L1PA5 6144 + 0 6140 4011 121 0 14 678 1 18 338 9 0 396 0 3 7 3 0 111 0 1 329 1 2 295 12 1 758 0 1 2740 1 0 327 chain 519174 chr3 198022430 + 25398009 25404419 L1PA7 6471 - 3 6468 5245 844 0 3 435 0 4 286 0 28 499 1 2 29 5 6 95 0 1 4 1 0 230 7 6 414 0 1 4 0 7 47 2 0 876 6 8 300 1 0 104 12 9 62 0 1 731 2 1 75 7 8 55 5 7 110 0 1 202 0 1 146 8 0 305 1 16 98 5 7 27 1 2 368 chain 24506 chr3 198022430 + 25576906 25577195 L1PA7 6471 - 1 293 107510 13 1 4 275 chain 3045 chr3 198022430 + 25577712 25577755 MIR3 191 - 86 128 224104 4 1 0 38 chain 11763 chr3 198022430 + 25666942 25667204 MER30 238 + 0 235 153204 16 20 42 50 33 0 7 7 0 12 5 0 45 4 3 21 3 0 39 chain 6689 chr3 198022430 + 25724112 25724305 L1MB8 1703 + 17 206 179763 4 1 0 26 22 10 11 6 9 33 43 49 47 chain 5710 chr3 198022430 + 25729260 25729375 MER5A1 166 + 35 151 188017 24 34 35 57 chain 40619 chr3 198022430 + 25739748 25740214 L1PA3long 6157 - 10 476 68408 466 chain 235636 chr3 198022430 + 25740947 25743559 L1HS 6032 - 0 2612 16996 2612 chain 8649 chr3 198022430 + 25752204 25752342 THE1C 375 + 238 375 167478 76 1 0 4 1 2 13 11 10 32 chain 52787 chr3 198022430 + 25757513 25758189 L1PA8 5853 - 1137 1834 57143 41 0 7 104 3 9 16 3 7 187 1 5 321 chain 81634 chr3 198022430 + 25758200 25759291 L1PA8 5853 + 4749 5853 42914 109 0 5 124 0 4 18 0 2 44 0 3 402 1 3 101 1 0 7 8 12 25 2 0 71 1 0 5 5 4 52 2 1 19 1 0 93 chain 6842 chr3 198022430 + 25792317 25792514 MER8 282 - 22 278 178644 22 4 3 23 90 150 58 chain 16281 chr3 198022430 + 25810876 25811171 L1MA4 2864 + 2032 2332 137529 86 1 0 72 1 0 8 0 3 17 69 74 6 1 0 34 chain 14517 chr3 198022430 + 25811332 25811636 L1PB1 5432 - 30 315 142831 9 1 0 23 1 0 10 26 36 27 16 1 15 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 5 3 1 21 chain 4681 chr3 198022430 + 25830789 25830855 MER41B 635 - 88 155 198751 34 1 2 31 chain 31086 chr3 198022430 + 25846238 25846720 MLT2A1 477 - 2 464 82374 29 0 1 20 12 0 8 47 38 18 11 12 144 0 1 22 0 1 11 4 1 156 chain 21445 chr3 198022430 + 25849683 25849962 AluSg7 307 + 4 280 122349 73 4 0 73 5 6 124 chain 5214 chr3 198022430 + 25855865 25855923 L1PA16 3655 - 376 434 192887 58 chain 5216 chr3 198022430 + 25861361 25861658 MER33 330 + 5 288 192859 19 4 0 17 8 0 15 112 106 18 71 75 33 chain 84189 chr3 198022430 + 25874600 25875552 L1PA5 6144 - 2 954 41828 952 chain 50594 chr3 198022430 + 25890213 25890868 PABL_A 660 - 0 660 58583 377 5 7 80 0 3 193 chain 17264 chr3 198022430 + 25890909 25891128 MER6A 605 + 316 535 134884 219 chain 100365 chr3 198022430 + 25893082 25894512 LTR12C 1709 + 0 1708 36666 24 0 9 245 16 18 40 0 43 82 5 6 4 1 0 103 1 12 64 0 278 181 15 10 5 0 2 82 75 20 175 1 0 86 9 4 134 1 0 81 chain 38930 chr3 198022430 + 25900393 25900843 LTR7 482 - 0 482 70827 114 1 0 49 0 4 23 0 31 12 2 0 249 chain 518090 chr3 198022430 + 25972677 25979076 L1PA7 6471 + 3 6450 5373 224 8 0 15 9 24 96 4 16 25 6 0 439 22 7 648 4 0 330 0 4 804 1 2 184 6 0 92 0 3 180 0 4 427 1 0 17 0 1 298 1 0 261 12 0 25 0 20 35 0 1 72 0 1 665 0 7 54 7 8 120 1 3 174 0 1 34 8 9 288 1 4 42 0 2 17 5 9 184 0 4 114 0 6 106 1 0 154 1 10 34 9 9 134 chain 3356 chr3 198022430 + 25988184 25988227 MER5B 177 + 133 176 217945 43 chain 492316 chr3 198022430 + 26034683 26041029 L1PA6 6164 - 45 6164 7255 401 1 2 394 0 4 150 0 5 171 6 8 305 1 0 157 0 1 10 8 12 130 0 4 50 7 5 302 5 8 128 0 4 172 9 6 288 4 7 57 0 2 107 0 1 4 1 0 34 0 1 392 0 4 345 0 1 72 301 0 48 3 4 399 0 4 451 0 4 310 7 9 104 2 1 176 10 19 253 6 8 116 10 9 135 8 10 52 2 1 76 6 26 160 chain 53497 chr3 198022430 + 26042495 26043191 L1PA10 4194 - 33 729 56683 11 1 0 34 4 1 329 1 4 84 0 1 16 0 1 17 2 0 104 0 1 93 chain 22137 chr3 198022430 + 26050189 26050465 AluY 311 + 0 295 119632 68 0 17 47 0 1 143 5 6 13 chain 59055 chr3 198022430 + 26061691 26062364 L1PA5 6144 - 0 671 53363 9 2 0 662 chain 37379 chr3 198022430 + 26075149 26075584 L1PA5 6144 - 0 433 72991 11 3 1 421 chain 534502 chr3 198022430 + 26078028 26084260 L1PA4 6152 - 9 6152 3650 244 55 0 420 0 1 1621 50 7 167 3 5 263 1 0 250 1 0 597 0 1 37 0 3 332 5 6 408 0 1 621 0 3 147 4 0 323 0 3 683 chain 13095 chr3 198022430 + 26087155 26087315 L1PB2 3958 + 3132 3292 147864 160 chain 8474 chr3 198022430 + 26122788 26122892 MLT1B 390 + 238 342 168434 104 chain 26062 chr3 198022430 + 26130039 26130396 THE1D 372 - 0 372 99786 15 0 1 145 5 6 12 7 10 106 1 11 66 chain 10021 chr3 198022430 + 26136850 26136998 L1MA7 2200 - 373 520 160477 22 3 5 5 2 0 76 1 0 39 chain 10640 chr3 198022430 + 26137068 26137216 THE1B 368 - 205 368 157656 102 5 20 41 chain 118385 chr3 198022430 + 26137227 26138795 THE1B-int 1605 - 11 1605 31653 79 3 0 575 18 19 166 10 11 51 6 1 19 1 4 196 0 1 15 2 27 21 0 1 391 0 2 15 chain 18473 chr3 198022430 + 26149958 26150187 LTR17 781 + 107 326 131575 202 10 0 17 chain 505581 chr3 198022430 + 26165962 26172104 L1PA6 6164 - 2 6164 6490 334 3 4 418 21 20 89 1 5 21 1 0 905 0 4 830 0 11 298 0 1 32 0 1 5 0 1 173 54 0 226 0 5 406 0 11 36 0 1 122 1 2 238 6 5 352 1 2 48 16 16 90 1 0 626 0 17 240 1 0 148 0 1 213 0 19 186 chain 8772 chr3 198022430 + 26180670 26180801 MLT2A2 560 - 439 559 166807 13 16 5 102 chain 3455 chr3 198022430 + 26188991 26189031 MER5A1 166 + 38 78 216110 40 chain 254285 chr3 198022430 + 26190550 26194027 L1PB1 5432 + 1595 5094 16015 107 11 8 36 1 0 116 0 1 529 2 1 64 4 5 36 1 0 25 8 13 50 0 3 169 1 2 75 5 0 108 5 6 206 3 14 406 4 7 96 6 5 64 7 8 202 1 0 210 0 4 152 0 8 120 7 5 20 0 1 149 6 8 137 7 0 19 4 0 19 3 6 14 20 20 230 0 3 12 chain 29991 chr3 198022430 + 26199162 26199553 LTR7 482 - 63 482 84833 48 1 0 76 0 31 15 1 0 132 17 16 101 chain 291329 chr3 198022430 + 26203353 26206961 HERVH-int 3825 - 0 3824 13939 37 0 1 49 6 11 629 4 6 115 0 1 12 3 5 447 0 2 409 11 16 305 0 1 545 15 0 455 1 0 28 3 212 4 1 0 49 24 0 8 1 27 71 15 17 30 1 0 57 0 2 273 chain 5996 chr3 198022430 + 26206971 26207066 LTR7 482 - 8 104 185279 41 13 14 41 chain 4606 chr3 198022430 + 26214318 26214380 L1MC4 1079 - 364 425 199545 12 1 0 49 chain 396305 chr3 198022430 + 26214982 26220331 L1PB1 5432 - 12 5355 10226 16 1 0 13 1 0 14 0 1 6 1 0 23 3 1 11 11 8 19 25 12 16 4 3 56 2 1 53 2 0 6 9 5 9 1 0 13 5 4 15 5 0 10 1 2 288 10 10 182 1 2 27 0 1 228 0 1 408 0 2 226 2 0 38 0 7 81 4 0 67 1 5 88 0 2 122 20 6 7 0 1 40 0 1 64 0 1 5 1 0 59 0 1 298 0 1 11 4 3 325 1 0 393 9 7 376 0 3 236 0 1 28 0 12 36 10 0 6 1 0 42 0 12 184 2 3 359 0 9 145 0 4 17 0 2 169 0 1 44 8 4 325 chain 24848 chr3 198022430 + 26225561 26225869 AluSq10 312 - 6 312 105635 18 2 0 288 chain 29841 chr3 198022430 + 26231213 26231567 L1PA7 6471 - 3 355 85307 9 2 0 343 chain 159451 chr3 198022430 + 26261815 26263748 L1PA8 5853 - 371 2301 23410 353 1 0 38 1 0 4 1 3 63 10 12 5 3 0 670 6 1 340 0 2 124 2 1 272 0 2 40 chain 550980 chr3 198022430 + 26280573 26286702 L1PA3long 6157 - 0 6157 1315 1108 0 1 239 0 21 1123 1 0 2825 0 1 37 1 8 86 1 0 708 chain 14957 chr3 198022430 + 26323942 26324153 MER4E1 777 - 7 221 141458 10 1 0 139 14 18 47 chain 297146 chr3 198022430 + 26335741 26338998 L1PA3long 6157 - 0 3263 13572 360 0 3 480 0 4 2127 1 0 289 chain 37147 chr3 198022430 + 26348482 26348926 LTR7C 471 - 22 471 73310 105 1 0 118 1 7 219 chain 44114 chr3 198022430 + 26356654 26357162 L1PA5 6144 - 1 510 64067 384 0 1 124 chain 43452 chr3 198022430 + 26357171 26357675 L1PA5 6144 + 5108 5611 64867 271 1 0 232 chain 502571 chr3 198022430 + 26358413 26365980 L1PA7 6471 - 2 6423 6693 11 3 0 126 26 25 9 1 4 673 1 0 282 9 8 311 12 1 70 1 2 369 0 1 741 0 1 336 20 21 100 0 1 101 2 4 568 3 1 6 0 2 57 2 3 301 1149 10 69 0 1 32 3 6 463 1 0 851 4 0 6 4 8 287 4 0 193 1 0 35 5 6 12 0 1 106 48 47 153 chain 54536 chr3 198022430 + 26363097 26363701 L1PA3long 6157 + 5019 5627 56009 285 0 4 319 chain 20291 chr3 198022430 + 26375286 26375586 THE1B 368 + 0 306 126249 113 6 8 48 1 0 29 0 3 13 13 16 10 1 0 66 chain 62421 chr3 198022430 + 26403768 26404517 L1P1 4361 + 4 753 51714 695 1 0 4 0 1 49 chain 557851 chr3 198022430 + 26426226 26432258 L1PA2 6032 - 4 6032 517 7 4 0 6021 chain 25103 chr3 198022430 + 26434898 26435269 L1PA8 5853 + 5489 5853 104272 74 2 1 44 4 2 66 22 20 48 1 0 14 4 3 92 chain 7250 chr3 198022430 + 26438768 26438892 MER2 342 - 68 195 175761 23 22 24 61 0 1 18 chain 565811 chr3 198022430 + 26439508 26445536 L1HS 6032 - 0 6029 170 5958 1 2 69 chain 174181 chr3 198022430 + 26477016 26479097 L1PA6 6164 + 4058 6162 21575 123 0 1 180 0 4 423 0 12 247 1 0 19 0 1 282 0 2 97 0 1 57 0 2 229 4 5 419 chain 433335 chr3 198022430 + 26506241 26511681 L1PA7 6471 + 1027 6468 9228 120 1 0 4 0 1 7 0 1 34 1 2 96 37 54 1128 2 0 164 1 2 455 7 4 230 0 1 150 5 6 11 1 0 193 3 1 7 0 1 43 2 0 266 3 4 140 0 2 5 2 0 509 0 4 41 13 1 325 4 1 581 1 0 676 0 2 161 3 0 8 chain 219461 chr3 198022430 + 26519159 26535707 L1PA3long 6157 - 0 4543 17917 4 0 1 851 0 1 686 1 0 256 13807 1802 787 1 0 155 chain 325196 chr3 198022430 + 26535707 26539321 L1PA3long 6157 + 2541 6157 12381 514 0 1 37 0 1 83 1 0 1970 0 1 1009 chain 9082 chr3 198022430 + 26554571 26554754 L1MA1 4479 - 289 459 165150 18 6 0 13 12 9 8 1 0 25 12 10 29 1 0 58 chain 14507 chr3 198022430 + 26558030 26558224 THE1B 368 + 173 368 142869 70 7 0 68 0 8 49 chain 33405 chr3 198022430 + 26558224 26558637 THE1B-int 1605 + 0 415 78557 134 0 1 172 1 2 106 chain 271278 chr3 198022430 + 26568327 26571625 L1PA7 6471 - 19 3326 15122 138 0 11 5 11 0 29 4 5 640 0 3 273 1 0 394 2 0 39 1 4 668 0 1 4 1 0 522 4 7 37 9 11 64 0 1 99 1 0 352 chain 251420 chr3 198022430 + 26571629 26575922 L1PA4 6152 - 9 6124 16148 841 0 1 161 0 1 303 0 2000 280 0 122 206 0 13 392 1 0 113 1 0 270 1 0 80 50 49 234 59 58 49 0 1 6 30 5 123 6 23 30 41 20 86 240 155 49 23 0 14 428 238 13 6 7 15 4 5 12 12 26 114 chain 17387 chr3 198022430 + 26584001 26584353 THE1C 375 + 6 351 134548 5 0 3 41 45 37 80 17 18 22 40 37 102 chain 4382 chr3 198022430 + 26598325 26598525 L1MA4 2864 + 2643 2803 202165 18 0 1 9 3 0 15 98 62 19 16 14 22 chain 3304 chr3 198022430 + 26609133 26609173 L1ME1 1623 + 565 605 218897 40 chain 142212 chr3 198022430 + 26613890 26615473 L1PA3long 6157 - 0 1582 25778 29 2 1 132 0 1 1414 1 0 5 chain 35281 chr3 198022430 + 26615473 26615875 L1PA3long 6157 + 4184 4594 74696 173 0 4 143 0 4 86 chain 12992 chr3 198022430 + 26619330 26619482 L1PA4 6152 - 9 162 148270 139 1 0 6 0 2 6 chain 19540 chr3 198022430 + 26622478 26622832 THE1C 375 - 0 359 128544 131 1 0 45 28 29 32 27 31 13 16 17 61 chain 125726 chr3 198022430 + 26644534 26646113 THE1B-int 1605 - 5 1605 29180 4 0 1 567 5 0 233 15 14 312 0 1 11 0 25 432 chain 8009 chr3 198022430 + 26681025 26681124 MER3 215 - 47 146 170989 99 chain 29157 chr3 198022430 + 26712502 26712805 AluYa5 310 - 7 310 88273 303 chain 36720 chr3 198022430 + 26717574 26717983 L1PA4 6152 - 0 407 73930 14 1 0 240 1 0 153 chain 31527 chr3 198022430 + 26717983 26718336 L1PA4 6152 + 5394 5748 81600 243 0 1 110 chain 4185 chr3 198022430 + 26734477 26734530 MLT1H 522 - 248 300 204765 35 1 0 17 chain 28968 chr3 198022430 + 26734539 26734843 AluYg6 310 + 0 304 89143 304 chain 174854 chr3 198022430 + 26769679 26771628 L1HS 6032 - 2541 4490 21484 1949 chain 140473 chr3 198022430 + 26771628 26773174 L1PA3long 6157 + 4613 6157 26074 510 0 1 1021 3 0 12 chain 132611 chr3 198022430 + 26787088 26788601 L1PA5 6144 - 875 2393 27498 615 0 2 24 1 0 635 0 3 115 0 1 123 chain 77892 chr3 198022430 + 26788601 26789479 L1PA5 6144 + 5261 6139 44522 878 chain 203615 chr3 198022430 + 26800050 26802323 L1PA4 6152 + 3867 6143 18954 1434 0 3 839 chain 21113 chr3 198022430 + 26820337 26822420 L1MA1 4479 - 289 2289 34963 18 5 0 8 32 37 16 7 5 20 1 8 27 2 0 88 18 11 5 1 0 88 1 0 14 2 0 19 1 0 71 1 0 15 3 1 23 2 1 119 43 6 6 0 4 37 349 23 94 0 87 28 4 0 39 13 7 14 1 0 76 12 8 10 2 0 146 0 228 9 2 0 104 1 0 71 14 0 73 3 0 5 13 16 50 0 8 257 chain 538266 chr3 198022430 + 26824589 26830621 L1PA3long 6157 + 0 6157 3113 152 0 1 211 0 1 403 8 136 2153 2 0 131 0 1 2538 4 0 430 chain 2463 chr3 198022430 + 26830653 26830896 L1MA1 4479 - 3857 4100 34963 243 chain 79757 chr3 198022430 + 26845159 26846076 L1PA4 6152 + 5219 6138 43705 210 0 1 610 0 1 97 chain 308279 chr3 198022430 + 26851650 26855410 L1PA6 6164 - 731 4496 13075 106 1 2 5 0 1 490 5 0 10 10 15 438 0 4 658 1 3 346 1 0 79 1 6 91 0 1 85 0 1 69 0 2 467 11 0 215 7 8 91 0 1 196 2 1 278 1 0 96 chain 60664 chr3 198022430 + 26855410 26856118 L1PA6 6164 + 5455 6161 52488 44 1 0 28 0 1 303 0 1 322 3 0 7 chain 41276 chr3 198022430 + 26864526 26865001 MER9a2 513 - 15 513 67566 451 0 23 24 chain 13824 chr3 198022430 + 26875456 26875797 L1PB1 5432 + 5119 5430 145166 19 1 0 8 15 13 8 2 0 53 2 1 15 1 0 34 94 76 24 1 0 21 1 0 13 1 0 18 2 0 8 chain 29066 chr3 198022430 + 26883333 26883688 L1PA7 6471 - 5 358 88689 7 3 0 174 0 1 171 chain 29941 chr3 198022430 + 26884838 26885152 AluYb8 318 - 4 318 84994 314 chain 318475 chr3 198022430 + 26917008 26921147 L1P3 4156 + 3 4107 12649 248 1 0 68 2 1 84 26 0 102 6 7 225 8 1 684 1 0 4 0 1 467 6 7 449 16 19 130 2 1 126 24 3 66 1 2 7 0 1 142 0 3 242 0 4 141 0 2 23 0 2 169 0 2 46 0 1 4 1 0 13 1 0 13 11 11 385 0 3 195 chain 544019 chr3 198022430 + 26922856 26929001 L1PA3long 6157 + 4 6155 2207 563 0 4 317 1 7 440 16 11 2662 4 0 450 0 3 30 0 2 747 0 1 899 1 0 15 chain 53951 chr3 198022430 + 26929035 26929706 L1PA7 6471 + 5793 6468 56402 44 0 1 298 0 1 45 0 3 138 1 0 145 chain 141629 chr3 198022430 + 26941414 26942988 L1PA4 6152 + 4555 6128 25876 1125 2 0 249 0 1 198 chain 268368 chr3 198022430 + 26958952 26962038 L1PA3long 6157 - 0 3075 15269 43 0 4 87 14 7 10 1 0 108 1 0 588 1 5 61 17 11 595 1 2 1465 3 1 8 4 1 79 chain 23204 chr3 198022430 + 26965598 26965950 THE1B 368 - 0 368 114668 75 1 0 112 13 12 45 0 3 8 6 7 41 10 24 41 chain 22270 chr3 198022430 + 26969706 26969956 L1P1 4361 - 905 1155 119031 250 chain 52955 chr3 198022430 + 26969956 26970553 L1PA5 6144 + 5539 6140 57046 451 0 3 87 0 1 59 chain 120233 chr3 198022430 + 26978183 26979539 L1PA4 6152 + 4779 6152 30968 308 0 16 131 0 1 917 chain 372066 chr3 198022430 + 26985592 26990445 L1PA8 5853 + 947 5818 11023 11 7 0 181 1 0 202 0 1 684 19 15 233 8 12 493 2 1 54 3 8 10 5 0 8 2 0 7 1 4 4 1 0 123 5 6 124 65 66 343 0 17 780 0 1 55 0 1 10 1 2 237 0 1 346 1 5 6 0 3 52 0 1 32 1 0 7 0 1 195 0 1 95 0 2 15 2 1 161 1 0 43 3 1 71 1 0 8 20 19 36 2 1 14 5 4 57 chain 396480 chr3 198022430 + 26995128 26999987 L1PA6 6164 - 2 4831 10218 6 5 0 131 1 0 6 5 6 1137 5 6 172 10 14 318 0 4 668 3 0 98 1 5 73 51 0 275 5 9 44 5 6 727 3 7 47 0 4 68 1 2 481 8 9 4 0 1 501 chain 102398 chr3 198022430 + 27000000 27001311 L1P2 5180 - 3866 5178 36162 521 1 0 6 1 0 153 19 15 56 1 0 32 1 2 14 1 0 47 0 11 206 5 4 44 14 13 40 1 0 148 chain 38197 chr3 198022430 + 27004487 27005045 MER51A 677 + 0 661 71838 112 0 1 26 1 0 31 4 69 15 28 78 205 4 0 54 8 0 70 chain 100185 chr3 198022430 + 27018475 27019598 L1PA4 6152 + 5030 6151 36723 420 2 0 701 chain 83473 chr3 198022430 + 27032089 27033038 L1PA4 6152 - 4113 5062 42020 949 chain 363363 chr3 198022430 + 27033038 27037141 L1PA4 6152 + 2060 6151 11279 1179 1 0 777 23 5 1725 0 10 222 2 0 25 2 1 147 chain 43558 chr3 198022430 + 27042525 27043034 LTR17 781 + 272 781 64734 55 0 1 139 2 1 313 chain 265839 chr3 198022430 + 27043089 27046490 HERV17-int 4347 + 280 3392 15401 319 0 1 54 1 2 88 0 1 717 7 5 10 17 12 589 7 11 50 0 3 45 294 0 77 0 3 422 4 3 700 chain 63306 chr3 198022430 + 27047922 27048723 L1PA7 6471 + 5646 6459 51319 66 3 0 6 6 9 405 1 5 106 0 9 63 4 1 13 0 2 128 chain 16392 chr3 198022430 + 27085671 27086022 MER51B 395 - 7 395 137233 79 1 13 45 81 80 42 1 0 8 13 21 34 7 26 40 chain 70590 chr3 198022430 + 27134398 27135158 L1HS 6032 + 5271 6032 48115 664 0 1 96 chain 16165 chr3 198022430 + 27163611 27163895 THE1D 372 + 80 372 137860 100 17 16 25 9 17 95 24 25 14 chain 386596 chr3 198022430 + 27192782 27198776 L1PB1 5432 + 87 5389 10561 607 0 15 103 12 11 76 9 10 95 1 2 357 12 16 16 1 0 4 18 0 138 0 4 114 0 1 160 0 4 23 319 23 76 13 12 628 0 3 84 4 5 70 0 1 96 2 1 44 0 3 813 2 3 5 1 0 16 353 12 205 0 1 227 13 16 84 0 1 100 21 7 242 3 0 254 0 1 53 8 16 156 55 17 20 2 0 9 16 11 11 3 1 50 2 1 16 1 0 42 2 1 16 1 0 4 28 17 10 8 5 14 6 4 20 1 0 19 chain 5531 chr3 198022430 + 27222608 27222832 Tigger2a 444 + 0 244 189747 24 142 162 58 chain 72126 chr3 198022430 + 27245799 27246574 L1PA2 6032 - 0 775 47421 775 chain 80268 chr3 198022430 + 27246646 27247510 L1PA2 6032 + 4315 5179 43483 864 chain 29139 chr3 198022430 + 27254361 27254761 MER51B 395 + 1 395 88370 38 13 0 91 0 2 113 1 0 6 1 2 12 0 1 65 6 10 54 chain 31213 chr3 198022430 + 27266501 27266901 MLT2A1 477 - 80 477 82138 11 3 1 181 0 1 23 0 1 9 4 1 169 chain 233723 chr3 198022430 + 27271793 27275168 L1PB2 3958 + 25 3838 17102 27 1 0 4 14 10 18 5 0 19 10 5 28 8 6 26 1 0 11 1 0 45 10 7 409 0 8 323 12 28 447 70 74 75 1 4 79 0 1 192 0 423 24 0 1 397 0 1 127 0 1 28 6 7 44 1 0 44 1 0 136 3 28 143 3 0 34 2 0 51 9 7 7 5 0 57 15 13 7 3 0 93 18 5 68 1 0 64 1 0 61 0 11 22 1 0 63 chain 89760 chr3 198022430 + 27277962 27279055 MER11A 1151 - 0 1151 39734 36 0 4 26 1 0 53 1 0 34 1 0 104 0 32 450 0 1 22 0 1 83 0 11 60 0 4 143 0 8 79 chain 2830 chr3 198022430 + 27280484 27280520 MER51A 677 - 443 478 228219 28 1 0 7 chain 34032 chr3 198022430 + 27291976 27292426 L1M1 2793 - 903 1353 77577 217 3 2 81 10 11 139 chain 502148 chr3 198022430 + 27299721 27305443 L1PA4 6152 - 9 6152 6717 302 0 1 6 0 1 538 1 2 1687 2 1 440 1 0 900 0 392 828 0 11 75 0 4 913 0 13 29 chain 74557 chr3 198022430 + 27379441 27380365 L1PA6 6164 - 3 949 46233 152 0 7 169 1 2 139 0 2 47 1 0 126 6 15 179 1 5 103 chain 70359 chr3 198022430 + 27380760 27382014 L1PA8 5853 + 4916 5853 48236 94 2 0 123 309 0 209 8 9 213 1 0 45 2 0 65 33 31 35 2 1 16 4 3 93 chain 4261 chr3 198022430 + 27472522 27472633 MADE1 96 - 0 96 203734 23 21 3 19 18 21 30 chain 24962 chr3 198022430 + 27531013 27531313 AluSg7 307 - 6 307 104996 169 0 1 131 chain 26284 chr3 198022430 + 27531706 27532085 MER4A1 472 - 0 465 98888 10 0 1 4 1 0 5 5 11 71 22 23 60 4 83 197 chain 15783 chr3 198022430 + 27557362 27557543 L1PA4 6152 - 9 190 139007 181 chain 22279 chr3 198022430 + 27562178 27562461 AluSp 311 + 12 289 118999 116 7 0 84 5 6 71 chain 87638 chr3 198022430 + 27572735 27573760 LTR5B 1012 + 0 1012 40519 131 21 7 380 0 1 493 chain 8267 chr3 198022430 + 27589250 27589348 HY3 101 - 2 100 169578 98 chain 26347 chr3 198022430 + 27591075 27591493 LTR7B 505 - 14 505 98625 37 14 13 52 0 1 26 1 0 63 1 89 15 44 20 60 0 10 105 chain 166692 chr3 198022430 + 27592375 27594787 HERVH-int 3825 - 1276 3747 22434 108 28 27 5 0 1 313 4 9 199 8 9 98 0 1 201 5 0 147 9 0 69 0 5 108 1 0 20 15 0 42 1 0 4 0 1 387 5 273 6 0 1 30 1 0 7 1 5 11 209 16 30 21 20 64 1 0 254 chain 29214 chr3 198022430 + 27594872 27595294 LTR7B 505 - 10 505 87986 40 15 14 22 7 6 5 0 1 18 0 1 23 1 0 85 0 2 26 3 27 12 0 38 60 0 10 105 chain 23718 chr3 198022430 + 27600066 27600347 AluSg7 307 - 13 295 111949 162 0 1 119 chain 25704 chr3 198022430 + 27602465 27602775 AluY 311 + 0 306 101267 51 5 0 75 0 1 179 chain 6791 chr3 198022430 + 27610456 27610551 MSTD 398 + 5 101 179016 39 5 6 51 chain 30587 chr3 198022430 + 27640492 27640916 LTR7B 505 + 0 497 83226 108 0 10 65 4 67 5 1 0 23 0 2 85 1 0 21 0 1 54 18 17 39 chain 48291 chr3 198022430 + 27642036 27642663 HERVH-int 3825 + 2970 3825 60247 46 1 0 335 6 0 7 3 9 50 0 227 38 0 2 141 chain 30491 chr3 198022430 + 27644190 27644640 LTR7B 505 + 0 491 83449 108 0 10 59 0 38 10 34 27 26 0 2 85 5 4 70 16 15 37 chain 21448 chr3 198022430 + 27651000 27651327 MER39B 650 + 84 423 122341 13 29 28 97 17 8 33 0 22 138 chain 79779 chr3 198022430 + 27662104 27663306 L1PA11 4918 - 289 1448 43693 18 120 94 9 4 0 20 1 0 16 2 0 65 2 0 13 7 8 58 5 0 68 4 0 569 0 1 22 4 2 152 1 2 42 chain 11851 chr3 198022430 + 27705878 27706021 MER57A1 433 - 0 143 152825 143 chain 24512 chr3 198022430 + 27715220 27715591 THE1D 372 + 0 372 107484 31 0 1 22 18 19 101 1 0 8 17 18 140 1 0 32 chain 11822 chr3 198022430 + 27721026 27721171 MER44A 345 + 126 271 152940 145 chain 18665 chr3 198022430 + 27723601 27723823 AluY 311 + 81 304 131040 49 1 2 172 chain 264865 chr3 198022430 + 27731673 27735852 L1MA1 4479 + 236 4136 15447 44 9 7 225 6 6 136 1 0 18 4 7 21 0 4 29 10 19 12 0 3 23 4 0 22 0 5 142 0 3 6 3 0 5 4 0 14 12 16 116 2 1 131 0 6 48 0 4 367 2 3 61 0 6 224 20 54 58 3 4 64 4 0 326 1 4 114 36 14 59 2 1 25 0 1 5 9 12 58 8 6 26 4 3 68 1 0 86 1 0 18 25 23 159 2 0 17 4 0 41 1 2 33 1 0 12 4 0 52 6 0 7 1 2 56 2 1 7 2 0 132 2 0 107 0 27 14 1 0 47 1 0 24 2 0 8 1 2 6 1 0 42 0 1 28 1 0 19 3 1 13 314 0 64 3 4 6 1 0 12 50 46 87 1 0 29 2 0 29 chain 4500 chr3 198022430 + 27741792 27741902 L1ME1 1623 - 354 463 200774 47 44 43 19 chain 25234 chr3 198022430 + 27746164 27746479 MLT2A2 560 + 232 560 103571 170 0 11 121 1 3 23 chain 36897 chr3 198022430 + 27785593 27785999 L1PA3long 6157 + 5751 6157 73665 406 chain 29469 chr3 198022430 + 27795595 27795963 L1PA7 6471 - 16 384 86758 146 1 2 176 1 0 44 chain 66614 chr3 198022430 + 27811325 27812050 L1PA3long 6157 - 15 740 49823 725 chain 66802 chr3 198022430 + 27848552 27849306 L1PA5 6144 - 5 771 49732 223 0 12 531 chain 425380 chr3 198022430 + 27857474 27863464 L1PA7 6471 - 6 6466 9410 382 0 9 116 0 1 336 1 0 147 0 5 22 0 1 155 4 1 952 0 2 14 0 2 299 11 12 766 4 0 6 8 12 499 0 3 90 0 1 111 0 2 905 123 132 96 115 140 61 13 145 40 20 13 80 404 705 54 30 17 126 chain 34259 chr3 198022430 + 27870156 27870628 LTR10F 562 + 0 562 77264 125 11 70 35 0 24 12 4 10 99 2 5 85 8 6 91 chain 30257 chr3 198022430 + 27894786 27895172 THE1D-int 1627 - 1091 1586 84037 86 1 103 29 5 12 265 chain 293346 chr3 198022430 + 27895592 27899732 L1PA11 4918 + 670 4486 13804 690 324 0 85 3 8 360 4 1 70 0 1 92 0 2 40 0 1 72 38 17 52 0 1 15 0 3 15 2 1 12 0 1 38 5 1 11 0 1 47 1 2 236 7 9 764 0 2 59 0 4 92 9 10 133 6 0 6 0 6 43 0 1 16 0 4 40 0 7 590 5 0 62 2 1 81 2 0 11 chain 11701 chr3 198022430 + 27913793 27913938 MER107 203 - 58 203 153467 42 0 2 61 2 0 40 chain 27523 chr3 198022430 + 27936966 27937308 THE1A 353 - 12 353 94591 231 1 0 110 chain 2641 chr3 198022430 + 27980024 27980088 Tigger3a 397 + 58 171 231159 17 21 70 26 chain 97328 chr3 198022430 + 27982413 27983484 L1PA3long 6157 - 0 1070 37475 905 1 0 165 chain 12209 chr3 198022430 + 27999831 28000000 L1PA11 4918 - 443 612 151384 68 2 0 13 2 1 56 3 6 25 chain 2297 chr3 198022430 + 28028877 28029167 MER97b 579 - 142 441 235411 12 7 5 20 229 240 22 chain 225553 chr3 198022430 + 28036646 28039149 L1PA3long 6157 - 0 2504 17555 338 0 1 2165 chain 25006 chr3 198022430 + 28065039 28065387 THE1A 353 + 6 353 104753 7 2 0 31 10 11 39 1 0 14 18 17 24 0 2 202 chain 117345 chr3 198022430 + 28065388 28067228 THE1A-int 1579 + 1 1567 32011 20 1 9 533 0 1 53 0 1 18 9 12 4 1 0 4 0 1 62 17 26 42 4 1 467 293 0 312 chain 540714 chr3 198022430 + 28100738 28106752 L1PA3long 6157 + 4 6157 2707 148 0 1 624 1 129 592 5 12 3259 0 1 819 5 0 408 6 5 136 0 8 11 chain 49582 chr3 198022430 + 28106763 28107372 L1PA7 6471 + 5833 6445 59334 63 0 1 234 0 1 165 11 12 136 chain 8115 chr3 198022430 + 28107425 28107529 L1PA8 5853 - 0 103 170414 93 1 0 10 chain 16241 chr3 198022430 + 28116345 28116522 L1PA3long 6157 - 0 177 137650 177 chain 41935 chr3 198022430 + 28135070 28135606 MER41A 554 + 1 547 66706 76 11 16 376 2 7 71 chain 31435 chr3 198022430 + 28136770 28137153 L1PA6 6164 - 2 386 81754 9 0 2 128 0 8 12 9 0 225 chain 29940 chr3 198022430 + 28167467 28167782 AluYb8 318 - 3 318 85002 315 chain 5037 chr3 198022430 + 28198382 28198441 Tigger2b_Pri 1066 - 178 237 194769 59 chain 10587 chr3 198022430 + 28200829 28200983 THE1C 375 + 209 363 157886 88 5 6 47 1 0 13 chain 16792 chr3 198022430 + 28200997 28201222 L1MA4 2864 + 2436 2664 136132 61 3 2 64 0 4 97 chain 5130 chr3 198022430 + 28205935 28206004 L1PB4 2604 + 2383 2453 193779 27 2 3 40 chain 30762 chr3 198022430 + 28215760 28216288 L1PB1 5432 + 4935 5420 82935 168 9 0 14 3 0 17 1 0 9 31 24 52 1 0 17 1 0 44 1 0 16 14 1 8 0 1 21 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 118557 chr3 198022430 + 28222690 28224022 L1PA5 6144 - 3307 4642 31602 271 0 4 588 1 0 472 chain 168786 chr3 198022430 + 28224023 28225998 L1PA5 6144 + 2821 6144 22187 108 2 0 82 1 2 496 2 0 709 3 1353 320 8 9 244 chain 2935 chr3 198022430 + 28231779 28231940 MLT1L 557 + 328 489 226410 28 109 109 24 chain 125851 chr3 198022430 + 28240928 28242469 LTR12C 1709 - 0 1709 29142 82 1 0 13 1 2 32 1 10 75 12 11 32 3 2 222 0 4 106 6 163 45 0 2 71 1 0 232 1 0 113 1 2 275 1 0 215 chain 159016 chr3 198022430 + 28245088 28247351 L1PA10 4194 + 337 2587 23462 19 1 0 6 9 7 11 5 0 5 3 0 9 10 0 9 1 0 21 30 31 19 0 4 10 2 0 16 33 42 836 0 1 9 2 1 49 7 6 352 1 3 421 0 3 106 6 0 115 33 32 107 chain 36233 chr3 198022430 + 28262448 28262852 L1PA4 6152 + 5732 6143 74581 34 0 6 236 0 1 134 chain 12151 chr3 198022430 + 28272306 28272459 L1PA8 5853 - 5 156 151607 88 1 0 19 2 1 43 chain 20582 chr3 198022430 + 28299009 28299292 AluSc 308 - 10 293 125354 127 30 30 126 chain 244057 chr3 198022430 + 28313121 28317020 L1PA10 4194 - 33 3971 16557 10 2 1 34 3 0 9 3 1 43 34 6 113 4 8 327 1 0 4 0 5 235 1 0 65 0 1 150 316 10 69 11 15 92 0 1 53 17 448 183 9 1 99 1 0 29 9 10 310 1 0 5 0 11 14 12 14 169 1 0 132 30 8 306 8 9 340 37 59 270 12 10 46 0 6 24 91 53 15 3 1 17 61 34 15 2 0 21 11 9 9 2 0 9 chain 19521 chr3 198022430 + 28352239 28352523 MER1B 344 - 1 302 128589 53 4 29 44 5 0 40 7 4 131 chain 244585 chr3 198022430 + 28395657 28398507 L1PA5 6144 + 3292 6144 16527 193 0 3 12 5 4 404 0 1 440 1 5 580 0 1 255 7 5 274 2 0 663 3 1 11 chain 381149 chr3 198022430 + 28407435 28411784 L1P1 4361 - 20 4355 10722 12 2 1 23 1 0 155 1 0 243 0 1 616 1 0 889 1 0 18 0 1 420 20 7 888 0 1 27 0 2 281 2 1 749 chain 383814 chr3 198022430 + 28440998 28446508 L1PB1 5432 + 24 5420 10645 38 0 2 131 9 12 337 2 1 56 2 1 153 17 11 20 0 1 607 2 1 7 323 0 188 0 188 306 8 14 44 0 7 274 0 4 66 7 0 103 1 0 226 1 20 44 0 3 214 0 1 22 21 25 112 0 1 462 5 10 226 0 1 234 0 1 282 15 21 23 1 5 21 1 0 81 0 4 44 0 1 97 0 1 34 1 4 162 1 0 5 0 1 115 12 6 10 1 0 19 1 0 13 1 0 11 4 0 9 2 0 68 2 1 44 1 0 16 25 12 19 29 24 19 1 0 21 2 1 12 1 0 16 chain 2991 chr3 198022430 + 28447732 28447767 MLT-int 841 + 86 121 225227 35 chain 110157 chr3 198022430 + 28455950 28458552 L1PA4 6152 - 1 2546 16151 339 1 0 278 0 10 208 0 1 334 70 4 1367 1 0 4 chain 258821 chr3 198022430 + 28458559 28461571 L1PA4 6152 + 3203 6152 15758 45 44 0 15 1 33 1681 70 4 338 0 1 204 0 10 284 1 0 323 0 5 6 chain 13378 chr3 198022430 + 28461571 28461887 L1PA4 6152 - 2944 3260 16151 316 chain 5078 chr3 198022430 + 28462327 28462392 L1MDa 1598 - 876 941 194312 65 chain 111316 chr3 198022430 + 28470486 28472088 THE1C-int 1605 + 2 1595 33857 12 3 2 91 5 59 205 1 0 56 0 1 10 96 18 106 0 1 64 22 22 101 0 9 15 7 8 499 18 21 61 1 3 30 1 0 113 0 1 85 chain 18999 chr3 198022430 + 28472098 28472480 THE1C 375 + 0 375 130116 15 2 0 32 89 92 47 28 20 169 chain 12399 chr3 198022430 + 28472767 28473151 MLT1B 390 - 0 388 150641 76 0 2 12 93 91 27 14 16 57 85 87 20 chain 28596 chr3 198022430 + 28473277 28473657 THE1C 375 - 0 375 90753 26 1 0 81 1 0 5 0 1 76 1 2 64 3 0 106 2 0 14 chain 30428 chr3 198022430 + 28480667 28481047 MLT2A1 477 - 92 477 83582 35 3 4 22 1 0 150 1 5 30 0 1 138 chain 447259 chr3 198022430 + 28481047 28486600 HERVL-int 5654 - 0 5654 8838 288 8 9 24 0 1 107 1 0 97 0 1 203 1 6 572 0 4 288 2 1 404 0 22 156 0 2 794 1 2 260 0 6 488 0 8 633 0 1 159 1 0 200 0 1 233 0 42 174 0 11 274 57 54 31 0 1 97 chain 6372 chr3 198022430 + 28486604 28486718 MLT2A1 477 - 4 117 182238 43 2 0 7 5 1 5 7 0 22 0 12 23 chain 145055 chr3 198022430 + 28496554 28498561 L1PA11 4918 - 340 2336 25315 11 2 0 13 1 0 15 31 22 9 4 0 20 1 0 16 2 0 56 11 9 13 2 1 59 4 0 5 1 0 25 10 11 159 7 9 51 10 8 187 16 17 318 0 1 175 0 6 164 0 4 102 0 1 18 0 2 489 chain 32317 chr3 198022430 + 28518049 28518484 MER1A 529 - 9 481 80341 60 7 4 321 12 52 35 chain 32934 chr3 198022430 + 28531335 28531904 L1PA15 4387 + 3671 4249 79317 60 0 4 50 19 35 68 13 11 28 6 5 117 1 0 5 12 14 36 2 1 25 4 3 22 9 8 22 1 0 21 4 0 11 1 0 32 chain 128281 chr3 198022430 + 28534641 28536023 L1PA2 6032 - 2 1384 28501 1382 chain 62560 chr3 198022430 + 28536023 28536699 L1PA2 6032 + 3971 4647 51562 676 chain 97154 chr3 198022430 + 28540142 28541254 L1PA7 6471 - 1 1113 37525 206 0 2 641 2 0 263 chain 4058 chr3 198022430 + 28561973 28562021 MER58A 224 + 34 83 206514 4 0 1 44 chain 21836 chr3 198022430 + 28563513 28563753 L1PA5 6144 + 5892 6132 120870 240 chain 234371 chr3 198022430 + 28568298 28571155 L1PA7 6471 - 4 2840 17075 33 9 0 7 0 9 63 4 0 46 1 2 45 0 2 376 5 6 11 18 1 234 0 6 338 1 0 261 5 0 139 0 1 489 4 5 58 7 0 562 0 1 141 chain 37522 chr3 198022430 + 28571155 28571634 L1PA7 6471 + 5958 6459 72788 339 22 22 100 0 22 18 chain 88915 chr3 198022430 + 28581928 28583022 MER11A 1151 - 0 1151 40040 66 1 0 19 0 2 171 1 33 199 0 2 90 0 1 24 0 1 154 0 1 83 0 11 66 1 0 141 0 8 69 0 1 9 chain 5610 chr3 198022430 + 28584954 28585202 ERVL-B4-int 2334 + 200 448 188984 38 86 85 19 42 44 25 17 16 21 chain 11892 chr3 198022430 + 28595284 28595535 L1PB1 5432 - 10 238 152637 18 14 12 22 1 0 24 2 0 14 9 6 18 19 8 4 1 0 15 1 0 44 1 0 18 1 0 25 chain 26685 chr3 198022430 + 28597459 28597791 L1PREC2 3366 - 2129 2461 97365 332 chain 15208 chr3 198022430 + 28610032 28610213 AluSp 311 + 105 286 140753 181 chain 4485 chr3 198022430 + 28612552 28612642 MER5A1 166 - 2 94 200971 18 1 0 8 23 26 40 chain 125753 chr3 198022430 + 28660780 28662261 L1PA6 6164 - 2 1491 29170 308 0 7 128 5 6 449 0 1 419 0 3 78 1 2 5 0 1 55 6 0 27 chain 211573 chr3 198022430 + 28662264 28664738 L1PA6 6164 + 2186 4668 18391 137 3 2 42 0 2 19 1 0 4 0 1 434 0 1 292 0 1 389 0 3 228 1 2 621 0 1 303 chain 57715 chr3 198022430 + 28676197 28677447 L1PA15 4387 - 31 942 54128 24 26 21 36 11 8 52 1 0 8 4 0 22 1 0 55 1 0 26 1 0 119 2 11 39 3 2 11 0 3 6 0 1 20 3 1 28 311 0 32 5 0 21 2 0 188 6 7 33 33 17 120 chain 29248 chr3 198022430 + 28683594 28684015 MLT2A1 477 - 80 470 87804 12 3 0 89 26 0 8 0 1 117 4 1 162 chain 20762 chr3 198022430 + 28694562 28694910 L1MA8 2339 - 413 723 124744 74 8 4 8 4 0 158 29 5 4 1 0 31 6 1 25 chain 7355 chr3 198022430 + 28716438 28716558 MER5A 189 - 30 148 175053 7 1 0 74 14 13 24 chain 9104 chr3 198022430 + 28717239 28717432 MSTA 426 + 199 402 165049 16 57 59 26 10 18 84 chain 170147 chr3 198022430 + 28728669 28730546 L1PA3long 6157 - 13 1892 22031 803 3 0 175 0 4 401 0 1 495 chain 34014 chr3 198022430 + 28731378 28731756 L1PA3long 6157 + 3035 3414 77598 94 0 1 284 chain 42600 chr3 198022430 + 28743149 28743684 MLT2A2 560 - 8 560 65901 133 0 1 5 3 14 89 2 0 106 0 1 140 0 2 43 0 4 14 chain 14157 chr3 198022430 + 28748996 28749211 MER30 238 + 0 234 144017 16 16 23 68 6 21 71 3 0 35 chain 45932 chr3 198022430 + 28754533 28755091 L1PA8A 6298 - 8 566 62100 98 13 13 447 chain 10643 chr3 198022430 + 28755102 28755292 MLT2B1 522 - 322 522 157635 26 24 33 78 15 16 47 chain 25232 chr3 198022430 + 28763281 28763620 THE1C 375 + 0 342 103577 85 5 6 95 1 0 17 0 3 136 chain 23635 chr3 198022430 + 28790941 28791255 THE1C-int 1605 + 23 393 112391 131 1 55 78 6 8 98 chain 253588 chr3 198022430 + 28791792 28795196 L1PA11 4918 + 1103 4495 16053 68 3 0 133 1 0 114 0 4 277 2 1 4 0 1 110 4 1 187 0 1 93 1 3 33 18 16 97 2 0 265 1 0 209 2 0 577 0 1 15 1 2 21 1 0 63 8 11 115 1 2 16 4 0 117 1 0 30 0 1 521 0 3 6 8 5 32 23 24 45 1 0 14 0 1 51 2 1 12 3 0 66 2 0 16 1 0 7 chain 14264 chr3 198022430 + 28805532 28805704 Tigger3 1187 + 332 505 143669 155 0 1 17 chain 5441 chr3 198022430 + 28829120 28829188 MSTC 436 - 0 68 190592 68 chain 107088 chr3 198022430 + 28850489 28852061 HUERS-P2-int 2744 - 5 1555 34948 24 2 0 12 0 1 4 5 0 9 1 0 27 1 0 4 19 3 22 0 9 8 1 0 15 4 2 8 1 0 8 1 0 39 16 0 32 2 0 72 1 0 179 10 9 189 1 0 49 32 45 43 0 19 6 18 0 43 12 9 488 0 6 80 6 8 78 chain 12320 chr3 198022430 + 28855198 28855447 L1PB1 5432 - 15 244 150938 13 1 0 13 1 0 22 1 0 23 2 0 14 1 0 5 2 0 19 29 16 10 6 5 41 1 0 13 0 3 32 chain 7171 chr3 198022430 + 28866444 28866615 LTR37B 484 - 62 231 176267 80 70 68 21 chain 8576 chr3 198022430 + 28910289 28910564 L1MA4 2864 - 63 300 167869 27 106 79 24 5 2 57 30 22 26 chain 4869 chr3 198022430 + 28915793 28915851 L1M1 2793 - 1255 1313 196597 58 chain 163587 chr3 198022430 + 28930132 28932111 L1PA7 6471 - 19 2015 22863 289 0 1 4 1 0 27 2 1 155 4 3 98 9 12 135 0 3 107 0 3 140 0 5 102 0 1 33 1 0 136 0 1 518 0 4 218 chain 24805 chr3 198022430 + 28944221 28944524 LTR12C 1709 - 501 851 105866 89 4 51 210 chain 6055 chr3 198022430 + 28946730 28946807 MLT1B 390 - 0 76 184775 67 1 0 9 chain 5928 chr3 198022430 + 28964544 28964658 MER8 282 - 20 124 185903 21 10 6 53 12 6 18 chain 29485 chr3 198022430 + 28978955 28979265 AluYb9 318 - 8 318 86693 310 chain 4152 chr3 198022430 + 29000831 29001026 MER52C 1267 + 874 973 205222 40 109 27 14 15 1 17 chain 16394 chr3 198022430 + 29001342 29001535 L1PA4 6152 - 2826 3025 136754 67 0 5 101 0 1 25 chain 253026 chr3 198022430 + 29001535 29004367 L1PA4 6152 + 3315 6152 16081 869 0 3 448 1 0 5 2 0 1201 0 6 51 1 0 254 chain 79196 chr3 198022430 + 29038281 29039173 L1PA5 6144 - 1382 2275 43946 830 0 1 62 chain 119571 chr3 198022430 + 29039173 29040541 L1PA5 6144 + 4752 6129 31191 539 0 4 778 11 16 40 chain 14413 chr3 198022430 + 29049077 29049260 L1PA16 3655 + 3379 3563 143171 36 6 7 141 chain 3980 chr3 198022430 + 29052783 29052826 MER5A1 166 - 84 127 207687 43 chain 30336 chr3 198022430 + 29055800 29056117 AluYb8 318 + 0 317 83816 317 chain 15370 chr3 198022430 + 29072634 29072800 L1PA4 6152 + 5970 6136 140292 166 chain 21247 chr3 198022430 + 29082490 29082874 THE1B 368 + 2 368 123031 44 0 1 53 7 5 64 61 45 18 1 0 7 14 13 14 0 1 101 chain 336598 chr3 198022430 + 29093113 29097234 L1PA7 6471 - 1 4134 11981 190 8 4 138 0 1 418 0 1 18 0 2 276 0 11 279 0 1 310 2 3 572 5 4 68 0 1 173 1 0 164 0 1 271 11 15 18 6 4 4 0 1 25 1 0 61 7 0 193 4 0 6 5 9 41 0 1 82 4 6 464 1 0 112 0 2 183 chain 80594 chr3 198022430 + 29099947 29101037 L1PBa 3878 + 2645 3748 43346 62 8 1 345 7 0 91 0 2 24 10 26 26 3 0 14 1 0 475 0 15 12 2 0 10 chain 18655 chr3 198022430 + 29102035 29102272 L1PB 1623 - 354 606 131065 132 1 0 47 0 16 57 chain 65725 chr3 198022430 + 29127515 29128451 L1PA14 3548 - 276 1205 50236 51 1 0 84 1 0 6 26 20 79 1 9 17 10 6 60 3 0 25 1 2 223 8 7 23 1 2 122 2 1 192 chain 58902 chr3 198022430 + 29131592 29132431 L1PREC2 3366 + 1258 2090 53455 41 12 16 28 4 3 27 5 6 212 14 0 94 1 0 5 0 1 98 0 1 4 13 14 211 0 1 70 chain 16170 chr3 198022430 + 29134469 29134661 AluSx4 309 + 94 286 137842 192 chain 366778 chr3 198022430 + 29149602 29153604 L1HS 6032 - 2008 6031 11193 219 0 1 3135 0 20 648 chain 49336 chr3 198022430 + 29167291 29167950 L1PA8 5853 - 6 661 59497 87 1 0 19 2 1 52 11 10 70 2 0 29 0 1 14 1 0 47 1 2 323 chain 87604 chr3 198022430 + 29171105 29172078 L1P1 4361 - 1285 2259 40533 840 0 1 133 chain 107966 chr3 198022430 + 29172088 29173621 L1PA3long 6157 + 4920 6157 34730 158 0 6 220 0 4 18 2 1 585 306 0 27 0 1 217 chain 28378 chr3 198022430 + 29173077 29173377 AluYa5 310 - 10 310 91666 300 chain 26256 chr3 198022430 + 29254012 29254379 THE1B 368 + 0 368 98993 15 2 0 22 0 5 39 1 2 89 3 2 24 3 1 169 chain 34915 chr3 198022430 + 29262772 29263216 L1PA8 5853 - 4 443 76318 89 1 0 19 2 1 45 2 0 5 0 2 7 1 0 72 2 0 47 1 0 46 0 1 105 chain 490066 chr3 198022430 + 29398546 29404152 L1PA5 6144 - 5 6141 7362 852 1 0 140 2 7 1373 0 1 3150 0 525 88 chain 5748 chr3 198022430 + 29410832 29410912 MADE1 96 + 0 96 187652 42 1 17 37 chain 20704 chr3 198022430 + 29415940 29416195 MER47A 366 + 59 314 124952 255 chain 24302 chr3 198022430 + 29477147 29477479 AluY 311 + 0 297 108649 27 1 0 56 35 0 123 1 2 89 chain 13828 chr3 198022430 + 29481101 29481250 L1PA3long 6157 - 0 149 145147 149 chain 132418 chr3 198022430 + 29513956 29515557 LTR12C 1709 - 0 1709 27538 39 0 2 50 4 15 294 8 9 72 0 4 79 0 47 261 1 0 108 0 41 167 12 12 20 1 2 21 0 2 464 chain 17653 chr3 198022430 + 29524586 29524786 AluY 311 + 72 269 133832 46 3 0 151 chain 72216 chr3 198022430 + 29549692 29550590 L1PA7 6471 - 1 901 47368 9 2 0 322 3 4 128 9 10 362 0 1 10 1 2 52 chain 5287 chr3 198022430 + 29569355 29569414 L1PA6 6164 + 6102 6161 192139 59 chain 4372 chr3 198022430 + 29572666 29572784 MER5A1 166 + 0 125 202295 14 15 19 25 32 35 32 chain 5172 chr3 198022430 + 29591802 29591898 MER53 195 + 0 106 193328 17 1 7 34 13 17 31 chain 29850 chr3 198022430 + 29620278 29620591 AluYb8 318 - 5 318 85281 313 chain 74955 chr3 198022430 + 29633791 29634662 L1PA5 6144 + 5277 6140 46036 26 6 5 681 7 0 151 chain 11413 chr3 198022430 + 29660584 29660753 L1PA8A 6298 + 6125 6288 154631 28 6 0 26 1 8 9 7 0 92 chain 507151 chr3 198022430 + 29711776 29717922 L1PA5 6144 + 0 6140 6387 124 1 15 438 0 1 374 25 0 217 9 0 483 3 0 746 0 1 29 6 9 83 0 3 182 4 33 90 0 4 370 7 1 305 0 1 832 0 4 123 25 22 262 22 0 364 1 0 397 0 3 624 chain 22231 chr3 198022430 + 29718356 29718761 MSTA 426 - 0 426 119205 110 8 16 20 77 83 47 11 17 29 0 1 103 chain 19014 chr3 198022430 + 29743663 29744362 LTR12C 1709 + 657 1519 130077 175 370 564 67 62 31 25 chain 5391 chr3 198022430 + 29754116 29754512 MLT2B2 565 + 115 553 191081 43 163 168 17 33 83 24 90 77 26 chain 243421 chr3 198022430 + 29766817 29769857 L1PA8 5853 + 2802 5847 16593 161 4 0 33 0 1 74 1 12 310 0 1 655 0 2 47 4 6 144 10 1 91 2 1 643 0 4 21 0 2 69 0 2 438 0 1 43 1 0 44 2 0 70 3 1 55 9 8 18 1 0 87 chain 64351 chr3 198022430 + 29770483 29771250 L1PA6 6164 - 6 769 50862 155 8 0 120 0 3 53 0 1 431 chain 3480 chr3 198022430 + 29773257 29773295 MLT2B4 540 - 0 38 215672 38 chain 24795 chr3 198022430 + 29780674 29780972 AluY 311 + 12 308 105916 52 9 6 62 0 1 175 chain 2975 chr3 198022430 + 29792270 29792303 LTR49-int 1717 - 1565 1598 225542 33 chain 2981 chr3 198022430 + 29797621 29797786 MER21C 908 - 29 173 225436 26 113 93 7 1 0 18 chain 22987 chr3 198022430 + 29807233 29807573 THE1B 368 - 0 364 115683 125 35 45 22 1 0 117 0 15 40 chain 4471 chr3 198022430 + 29817880 29817932 L1PA5 6144 - 91 142 201106 22 1 0 29 chain 13747 chr3 198022430 + 29822459 29822612 L1PA4 6152 - 1 155 145447 7 0 1 146 chain 10818 chr3 198022430 + 29826856 29827011 L1PB1 5432 + 3895 4052 156906 39 4 5 46 0 1 4 1 0 10 0 1 51 chain 83576 chr3 198022430 + 29855286 29856228 L1P1 4361 - 33 973 42086 23 1 0 155 1 0 762 chain 7213 chr3 198022430 + 29893301 29893450 L1PA13 3608 + 3346 3488 175985 25 28 25 35 0 1 11 2 0 5 2 0 18 2 1 21 chain 27900 chr3 198022430 + 29894935 29895261 LTR17 781 - 455 781 93369 326 chain 4016 chr3 198022430 + 29899254 29899297 5S 121 - 78 121 207128 43 chain 11803 chr3 198022430 + 29904664 29904798 L1PA5 6144 + 5940 6073 153023 57 1 0 76 chain 6092 chr3 198022430 + 29904808 29904879 L1PA5 6144 + 6073 6144 184477 71 chain 75475 chr3 198022430 + 29914330 29915441 L1PREC2 3366 - 403 1497 45780 10 4 1 15 0 4 7 0 1 4 78 58 13 4 0 44 1 0 54 2 0 41 1 0 49 0 7 335 2 1 49 1 4 397 chain 8676 chr3 198022430 + 29920415 29920526 AluJr4 308 + 163 283 167328 74 0 9 37 chain 18666 chr3 198022430 + 29928766 29929120 THE1D 372 + 0 349 131039 48 9 0 17 36 37 26 0 4 34 33 34 23 2 1 85 1 0 40 chain 29909 chr3 198022430 + 29963696 29964012 AluYb8 318 + 0 316 85069 316 chain 20418 chr3 198022430 + 30001141 30001451 THE1C 375 - 55 375 125843 134 1 2 45 0 4 16 10 12 27 16 19 61 chain 219329 chr3 198022430 + 30006242 30009648 L1PB1 5432 - 19 3146 17926 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 25 13 12 5 4 42 2 1 15 2 1 24 0 1 28 2 0 9 26 20 21 4 5 9 3 0 16 5 4 31 1 0 5 9 10 40 19 14 142 31 29 186 2 0 5 1 0 151 0 1 4 6 4 88 0 2 114 1 2 46 1 0 58 5 4 80 0 5 39 0 10 70 0 1 118 0 4 92 5 21 93 0 2 28 0 1 4 1 0 50 1 3 307 4 6 235 2 0 34 0 1 107 278 0 206 0 4 131 4 0 159 0 1 49 chain 508623 chr3 198022430 + 30020951 30027283 L1PA7 6471 - 10 6456 6270 6 0 4 18 0 9 287 0 1 290 3 4 139 1 0 80 5 8 442 0 1 16 6 7 324 2 0 153 0 4 361 0 2 180 19 20 99 3 6 172 0 1 251 0 4 15 4 8 281 0 2 14 0 1 191 0 6 413 7 0 114 0 1 362 0 4 196 1 2 723 0 4 175 0 14 17 0 24 14 51 10 19 1 16 61 0 2 76 0 1 89 23 40 155 7 31 43 0 1 44 14 23 103 1 0 23 1 2 237 chain 526333 chr3 198022430 + 30035418 30041409 L1PA4 6152 + 10 6151 4561 121 0 2 22 1 2 423 1 0 191 1 129 505 0 9 385 3 0 1134 0 1 1422 0 4 632 4 0 291 1 9 459 0 5 395 chain 89026 chr3 198022430 + 30041424 30042537 L1PA7 6471 + 5335 6467 39991 32 0 15 50 10 9 173 0 3 81 0 2 431 0 1 132 0 2 9 13 12 109 4 2 69 chain 12754 chr3 198022430 + 30062848 30063134 L1PB1 5432 + 5158 5403 149237 11 2 0 13 6 4 33 1 0 18 1 0 44 1 0 12 28 15 19 38 19 24 1 0 21 1 0 12 chain 3350 chr3 198022430 + 30066707 30066987 MER5C 305 - 0 305 218047 21 41 43 29 169 192 20 chain 17673 chr3 198022430 + 30081371 30081657 L1PA10 4194 - 44 332 133765 25 12 9 40 12 15 119 0 4 21 9 7 48 chain 124103 chr3 198022430 + 30081667 30083348 L1PA10 4194 + 2142 3835 29665 48 0 5 434 0 1 24 11 6 16 3 7 83 1 2 138 9 11 214 4 1 126 1 2 44 5 7 26 17 19 293 0 2 184 chain 47687 chr3 198022430 + 30091414 30091998 L1P1 4361 + 1 599 60705 136 10 24 438 chain 495856 chr3 198022430 + 30092240 30097765 L1PA4 6152 + 621 6152 7080 256 0 1 1441 0 1 207 0 3 198 0 1 3423 chain 24993 chr3 198022430 + 30126163 30126471 AluSp 311 - 5 311 104835 167 9 7 132 chain 61843 chr3 198022430 + 30126846 30127607 MER4E1 777 + 0 770 51978 23 1 0 73 0 1 56 0 3 67 2 1 319 8 15 212 chain 5939 chr3 198022430 + 30135396 30135502 L1MB1 2102 - 546 654 185787 27 4 5 26 10 11 39 chain 18795 chr3 198022430 + 30137106 30137355 L1PA6 6164 + 5912 6162 130686 92 18 17 124 1 3 14 chain 29522 chr3 198022430 + 30147696 30148153 L1MA2 4263 - 150 598 86557 8 1 0 25 0 2 20 22 15 76 11 9 152 13 10 75 1 0 4 0 2 22 0 1 27 chain 76760 chr3 198022430 + 30167397 30168388 L1P3 4156 - 17 1014 45016 24 2 1 7 2 0 76 1 0 108 7 7 401 0 1 20 24 31 198 0 2 121 chain 115206 chr3 198022430 + 30168388 30169880 L1PA8 5853 + 4365 5853 32714 77 2 0 145 10 11 411 0 2 17 2 1 5 0 1 147 0 1 255 3 4 124 1 0 43 2 0 69 2 1 10 1 0 51 2 1 18 3 2 92 chain 7311 chr3 198022430 + 30174476 30174568 MLT1B 390 + 35 128 175363 55 0 1 37 chain 77252 chr3 198022430 + 30194456 30195348 L1PA5 6144 - 6 899 44850 141 3 0 5 7 10 696 0 1 40 chain 34133 chr3 198022430 + 30195351 30195731 L1PA5 6144 + 4842 5220 77433 50 2 0 328 chain 71667 chr3 198022430 + 30241875 30242760 L1PA8 5853 - 1 884 47619 92 1 0 72 1 0 9 2 1 70 2 0 46 7 6 382 0 3 164 0 1 37 chain 49154 chr3 198022430 + 30242760 30243343 L1PA8 5853 + 4378 4961 59561 583 chain 57799 chr3 198022430 + 30254260 30254899 L1PA5 6144 - 0 639 54082 639 chain 259641 chr3 198022430 + 30254899 30257984 L1P1 4361 - 1246 4357 15723 1693 3 6 258 0 3 141 1 0 65 0 6 268 7 8 532 9 23 108 chain 101307 chr3 198022430 + 30286030 30287149 L1PA2 6032 + 4906 6032 36440 198 0 1 904 0 6 17 chain 79025 chr3 198022430 + 30320933 30322015 MER41-int 2638 + 1545 2632 44048 35 13 12 44 1 2 57 1 0 161 0 1 19 2 0 32 9 7 111 1 2 4 1 0 194 3 5 32 0 1 143 0 5 55 4 5 160 chain 46062 chr3 198022430 + 30322028 30322582 MER41A 554 + 0 554 61987 554 chain 50954 chr3 198022430 + 30372586 30373238 PABL_A 660 - 0 660 58340 35 0 1 154 2 0 180 0 1 155 2 1 39 1 10 84 chain 177712 chr3 198022430 + 30377734 30379744 L1PA5 6144 - 0 2016 21188 11 2 3 95 0 1 733 0 4 1169 chain 25724 chr3 198022430 + 30379744 30380029 L1P1 4361 + 3601 3886 101196 285 chain 10581 chr3 198022430 + 30394909 30395030 L1PA6 6164 - 2 124 157909 56 0 1 65 chain 74792 chr3 198022430 + 30406008 30406823 L1PA3long 6157 - 858 1673 46117 815 chain 74740 chr3 198022430 + 30406826 30407654 L1PA3long 6157 + 5330 6157 46143 386 1 0 441 chain 18685 chr3 198022430 + 30423956 30424206 AluSg7 307 - 47 298 130982 128 0 1 67 18 18 37 chain 11620 chr3 198022430 + 30424226 30424374 THE1B 368 - 196 359 153809 113 0 15 35 chain 35153 chr3 198022430 + 30424383 30424804 THE1B-int 1605 - 0 421 75986 421 chain 267580 chr3 198022430 + 30427172 30430397 L1PA7 6471 - 3 3222 15314 7 4 0 61 0 1 90 3 4 166 0 1 510 2 0 14 12 2 68 0 1 187 3 2 391 0 1 480 0 1 80 0 5 229 0 2 329 5 0 288 0 4 58 3 2 235 chain 15169 chr3 198022430 + 30437688 30437885 THE1B 368 + 174 368 140859 117 3 0 77 chain 88766 chr3 198022430 + 30452922 30453903 L1PA2 6032 - 0 980 40059 444 1 0 536 chain 172260 chr3 198022430 + 30453903 30455775 L1PA2 6032 + 3173 5045 21786 1872 chain 437362 chr3 198022430 + 30470141 30475112 L1PA4 6152 + 1174 6152 9115 1144 0 2 133 2 0 620 0 1 102 2 1 104 6 5 654 0 1 296 0 1 113 0 4 1644 5 0 140 0 7 6 chain 3243 chr3 198022430 + 30475253 30475289 MLT1H2 457 - 361 397 220175 36 chain 12405 chr3 198022430 + 30486742 30486888 L1PA2 6032 - 5 151 150613 146 chain 6181 chr3 198022430 + 30491928 30492024 L1MC4 1079 - 282 378 183729 21 3 0 10 1 0 24 0 3 21 0 1 16 chain 9581 chr3 198022430 + 30509059 30509246 Tigger3a 397 + 61 270 162693 21 33 56 36 14 13 83 chain 5590 chr3 198022430 + 30509594 30509662 MER94 134 - 1 69 189171 68 chain 27665 chr3 198022430 + 30567109 30567406 AluYf5 307 + 0 297 94168 297 chain 44296 chr3 198022430 + 30581659 30582155 L1PA5 6144 - 12 508 63828 496 chain 20134 chr3 198022430 + 30591761 30592333 LTR35A 463 + 0 463 126734 13 4 0 30 12 0 14 123 30 26 50 25 31 3 1 39 2 0 10 1 0 10 0 34 12 56 52 136 chain 24079 chr3 198022430 + 30664103 30664397 AluSg 306 + 12 306 109876 294 chain 4494 chr3 198022430 + 30709420 30709474 MER58C 217 - 1 55 200858 54 chain 21326 chr3 198022430 + 30721350 30721614 AluSg7 307 + 13 278 122769 111 1 2 152 chain 8548 chr3 198022430 + 30736321 30736441 MER20 218 - 64 185 168026 66 10 11 44 chain 112703 chr3 198022430 + 30840093 30841627 THE1A-int 1579 - 5 1579 33478 452 8 34 156 2 1 97 6 8 150 28 23 21 0 2 141 45 51 300 3 13 125 chain 22013 chr3 198022430 + 30841629 30841962 THE1A 353 - 2 340 120170 54 0 2 44 0 1 62 1 0 57 40 42 40 0 1 35 chain 59393 chr3 198022430 + 30862156 30862830 L1PA3long 6157 + 5489 6156 53181 372 1 0 26 1 0 106 5 1 10 1 0 152 chain 15948 chr3 198022430 + 30867155 30867424 L1PA8 5853 + 5585 5847 138523 19 8 7 52 2 0 16 1 0 9 4 3 43 12 11 15 1 0 87 chain 10482 chr3 198022430 + 30930520 30930827 THE1B 368 - 0 368 158324 25 54 32 71 99 182 58 chain 6041 chr3 198022430 + 30942137 30942210 L1PA8 5853 - 6 79 184883 73 chain 84747 chr3 198022430 + 30971350 30972437 L1PA8 5853 + 4762 5853 41617 244 1 0 4 2 0 43 1 0 4 0 1 26 0 2 9 1 4 47 0 10 231 1 0 177 1 0 45 3 1 69 13 11 53 1 0 17 1 0 93 chain 4185 chr3 198022430 + 31000317 31000367 LTR67B 553 + 55 104 204771 20 1 0 29 chain 114248 chr3 198022430 + 31002040 31003527 THE1B-int 1605 - 6 1603 33011 49 0 2 16 1 0 38 1 8 56 0 4 32 0 56 45 1 0 52 1 0 98 1 5 108 0 1 491 0 13 71 1 26 387 1 0 21 1 3 15 chain 6324 chr3 198022430 + 31015485 31015579 MSTA 426 - 49 173 182603 40 0 9 11 3 24 40 chain 21680 chr3 198022430 + 31025065 31025338 AluSc 308 + 11 285 121466 245 4 5 24 chain 4711 chr3 198022430 + 31026766 31026824 MER134 117 + 4 62 198387 58 chain 23158 chr3 198022430 + 31033443 31033803 THE1C 375 - 2 373 114862 23 1 0 99 28 45 6 7 0 18 0 3 91 0 1 74 2 0 11 chain 9873 chr3 198022430 + 31038582 31038707 MER85 139 - 0 135 161216 40 0 10 85 chain 22919 chr3 198022430 + 31067733 31068028 AluSp 311 - 7 301 116016 150 8 7 137 chain 268401 chr3 198022430 + 31085169 31088909 MER61-int 3695 + 1 3695 15266 49 1 0 55 0 1 92 39 0 73 2 1 22 4 1 31 34 31 29 1 0 25 27 13 44 4 0 71 0 4 94 2 1 6 1 0 135 0 3 65 14 12 5 0 1 87 0 1 140 0 1 28 0 5 30 0 1 4 1 5 79 9 2 145 1 3 44 0 1 143 2 0 5 0 3 27 0 5 155 6 7 64 8 6 90 14 16 174 2 0 48 1 4 198 0 1 13 0 1 267 0 1 7 2 9 80 1 0 88 14 13 34 1 0 213 13 11 29 2 0 47 3 0 147 0 1 342 2 0 5 chain 87884 chr3 198022430 + 31096923 31098484 L1PA7 6471 - 10 5373 40420 231 439 0 13 1 0 94 1 0 506 0 3 95 0 4240 181 chain 24996 chr3 198022430 + 31097175 31097570 LTR3 431 - 9 405 104810 138 57 54 23 5 8 149 0 1 23 chain 13525 chr3 198022430 + 31130741 31130966 THE1D 372 + 146 372 146265 20 48 49 157 chain 81046 chr3 198022430 + 31150323 31151505 L1PB2 3958 - 120 1312 43170 87 12 11 17 0 1 17 3 0 26 1 0 5 0 11 45 1 0 73 1 0 30 3 0 25 0 19 20 3 0 12 2 0 65 6 0 13 1 0 54 2 0 71 1 0 25 7 11 23 0 3 7 3 0 85 0 2 5 1 0 151 11 10 268 chain 3520 chr3 198022430 + 31156335 31156372 MLT1B 390 + 51 88 215065 37 chain 108274 chr3 198022430 + 31189408 31190617 L1PA4 6152 - 0 1214 34624 6 0 5 1203 chain 38240 chr3 198022430 + 31190617 31191116 THE1B-int 1605 - 1081 1605 71787 73 3 28 216 0 1 157 1 0 49 chain 22245 chr3 198022430 + 31191116 31191478 THE1B 368 - 0 366 119142 125 64 66 60 8 10 105 chain 52499 chr3 198022430 + 31191480 31192296 L1M1 2793 - 1167 1991 57304 68 0 1 41 1 0 4 1 2 24 0 1 217 7 0 20 4 0 69 1 0 69 8 16 54 0 1 15 22 21 98 43 56 10 1 0 8 2 0 29 chain 15706 chr3 198022430 + 31206515 31206695 L1PA5 6144 - 15 195 139245 180 chain 26215 chr3 198022430 + 31247416 31247780 THE1C 375 - 0 375 99140 189 3 4 31 0 6 6 18 22 117 chain 8249 chr3 198022430 + 31267689 31267807 MER58D 378 + 252 367 169692 46 9 6 63 chain 31431 chr3 198022430 + 31270480 31270952 L1MA2 4263 + 3617 4079 81765 45 1 0 120 0 3 11 13 10 150 11 9 36 0 1 56 13 6 11 1 0 4 chain 13922 chr3 198022430 + 31310909 31311061 AluYc 301 + 137 289 144850 152 chain 4226 chr3 198022430 + 31328514 31328560 MLT2D 439 + 391 437 204218 46 chain 15621 chr3 198022430 + 31331518 31331762 MER39B 650 - 68 305 139520 34 22 14 124 11 12 53 chain 12244 chr3 198022430 + 31370258 31370431 MSTA 426 - 228 418 151230 62 8 29 43 4 0 56 chain 82990 chr3 198022430 + 31439325 31440373 L1PA8 5853 - 4 1091 42341 89 1 0 19 2 1 52 1 0 9 5 4 67 2 0 38 7 6 176 0 18 361 4 32 215 chain 66567 chr3 198022430 + 31442528 31443598 L1PA14 3548 - 92 1142 49844 42 1 0 14 2 1 6 1 0 15 4 2 33 17 12 24 10 10 76 1 0 24 0 1 28 61 54 109 22 18 34 2 0 10 7 5 115 0 1 134 1 0 79 0 3 67 7 6 57 0 3 67 chain 2793 chr3 198022430 + 31471537 31471628 L1MC3 1789 + 168 257 228824 21 20 14 20 18 22 12 chain 4120 chr3 198022430 + 31506883 31506946 MER3 215 - 71 156 205645 33 1 23 29 chain 6493 chr3 198022430 + 31521384 31521462 MLT1J 494 + 66 144 181311 78 chain 29054 chr3 198022430 + 31532898 31533208 AluYa5 310 - 0 310 88741 310 chain 23056 chr3 198022430 + 31548092 31548498 LTR7 482 - 5 482 115372 44 13 14 127 0 31 25 11 12 41 0 51 13 19 18 13 31 19 69 chain 13259 chr3 198022430 + 31587222 31587419 MER30 238 + 0 238 147250 12 7 25 58 7 24 34 0 6 79 chain 28422 chr3 198022430 + 31594313 31594611 AluYg6 310 + 0 298 91499 298 chain 120937 chr3 198022430 + 31647219 31648805 THE1B-int 1605 + 0 1599 30711 84 6 2 11 2 3 313 1 0 10 4 28 138 1 2 80 1 2 32 5 4 822 8 0 68 chain 15246 chr3 198022430 + 31648812 31649135 THE1B 368 + 3 362 140649 86 62 64 24 43 76 37 0 2 16 1 0 54 chain 7315 chr3 198022430 + 31660626 31660755 Tigger4a 237 + 45 164 175338 12 17 0 50 5 12 45 chain 5681 chr3 198022430 + 31715578 31715655 MSTB1 431 + 23 102 188294 37 2 4 38 chain 29608 chr3 198022430 + 31719291 31719600 AluYb8 318 + 0 309 86180 309 chain 24644 chr3 198022430 + 31731020 31731376 THE1B 368 + 0 364 106762 131 8 11 27 1 0 15 2 3 5 2 0 114 5 13 21 1 0 24 chain 25310 chr3 198022430 + 31788187 31788477 L1PA4 6152 + 5863 6152 103173 139 1 0 150 chain 52239 chr3 198022430 + 31812775 31813423 PABL_B 668 + 0 668 57469 281 1 0 7 0 1 63 1 0 70 0 21 124 1 0 4 0 1 96 chain 14546 chr3 198022430 + 31824652 31824992 L1PB1 5432 + 5117 5426 142736 21 1 0 6 1 0 14 5 1 9 3 1 51 23 21 40 1 0 11 32 21 13 3 1 5 1 0 14 2 0 24 1 0 20 11 9 23 1 0 4 chain 23583 chr3 198022430 + 31861807 31862103 AluSx4 309 + 1 292 112674 279 5 0 12 chain 131707 chr3 198022430 + 31911430 31913015 LTR12C 1709 + 0 1709 27697 290 0 1 6 0 1 112 0 3 56 0 1 180 0 119 68 7 6 77 1 0 191 1 0 6 3 1 106 0 4 481 chain 37913 chr3 198022430 + 31929543 31930118 L1MA5A 2387 + 972 1557 72265 69 2 1 160 15 24 54 1 0 67 9 5 43 17 16 25 0 4 99 0 5 5 1 0 8 chain 3136 chr3 198022430 + 31998971 31999041 MARNA 422 - 300 372 222241 12 5 6 22 8 9 23 chain 76469 chr3 198022430 + 32036298 32037293 MER11A 1151 - 0 1146 45227 66 1 0 163 0 9 10 1 2 5 1 0 37 6 40 72 0 4 57 1 4 133 1 0 6 0 7 92 0 1 54 0 1 94 4 0 64 1 0 76 0 99 50 chain 12254 chr3 198022430 + 32046565 32046725 L1PA8 5853 - 0 158 151187 93 1 0 19 2 1 45 chain 539210 chr3 198022430 + 32051957 32058087 L1PA4 6152 + 10 6141 2946 1254 3 0 164 5 6 317 0 1 763 1 0 1815 0 1 661 4 0 306 0 4 152 0 1 583 0 1 102 chain 9303 chr3 198022430 + 32065233 32065400 MER44A 345 - 23 174 164049 20 1 0 53 15 0 8 11 10 53 0 1 6 chain 21757 chr3 198022430 + 32068523 32068779 L1PA7 6471 - 1 257 121182 256 chain 3029 chr3 198022430 + 32070320 32070352 MSTC 436 + 6 38 224384 32 chain 16099 chr3 198022430 + 32070664 32071020 MER50 708 + 441 690 138064 40 1 0 11 29 30 43 107 0 125 chain 85112 chr3 198022430 + 32084042 32085123 MER11A 1151 - 5 1143 41477 173 1 2 55 0 1 56 41 1 22 1 0 141 6 7 394 4 0 129 0 99 58 chain 15388 chr3 198022430 + 32085219 32085458 L1PA16 3655 + 3403 3619 140240 12 0 1 99 0 2 61 3 0 14 18 0 11 5 0 16 chain 57518 chr3 198022430 + 32093807 32096012 MER41-int 2638 + 111 1046 54224 43 659 29 26 8 5 15 2 0 19 1 0 7 4 0 30 12 8 44 12 25 89 4 9 30 1 0 237 0 2 80 663 14 83 0 4 82 8 9 31 1 0 14 chain 45986 chr3 198022430 + 32093868 32094452 L1PA8 5853 + 5266 5845 62056 191 0 1 104 1 0 46 2 0 65 7 6 61 2 1 19 1 0 85 chain 25776 chr3 198022430 + 32105071 32105441 THE1D 372 + 0 372 100982 162 0 1 17 43 44 148 chain 28664 chr3 198022430 + 32108958 32109406 LTR7B 505 + 0 491 90469 108 0 11 65 6 13 20 0 1 7 21 16 8 0 31 81 11 10 65 19 18 37 chain 30382 chr3 198022430 + 32117267 32117996 LTR7B 505 + 0 505 83706 108 0 10 57 15 77 26 0 2 85 1 0 19 297 1 56 14 13 51 chain 13874 chr3 198022430 + 32122924 32123200 THE1B 368 - 85 368 144996 40 7 15 14 2 6 8 1 0 6 30 25 46 16 18 11 1 0 94 chain 31594 chr3 198022430 + 32128198 32128641 LTR3B 427 - 4 427 81502 88 9 15 17 0 3 21 31 2 277 chain 30003 chr3 198022430 + 32130703 32131087 LTR3B 427 - 4 418 84799 88 1 7 25 0 3 96 0 21 174 chain 8506 chr3 198022430 + 32138426 32138531 MLT1A1 405 + 7 113 168262 29 0 1 76 chain 22919 chr3 198022430 + 32139715 32139992 AluYc 301 + 0 283 116018 75 0 2 24 0 2 17 0 2 161 chain 25649 chr3 198022430 + 32143669 32144082 LTR14A 344 + 0 344 101505 45 3 0 8 41 0 58 31 0 151 0 5 4 0 1 72 chain 10960 chr3 198022430 + 32144436 32144597 LTR39 781 + 7 172 156359 17 16 20 128 chain 62733 chr3 198022430 + 32156137 32156946 LTR12 884 - 11 884 51572 495 2 0 32 11 12 39 0 91 113 26 1 64 1 0 26 chain 2284 chr3 198022430 + 32156829 32156855 LTR12 884 - 595 621 174897 26 chain 5155 chr3 198022430 + 32161452 32161512 LTR24B 570 - 0 60 193500 60 chain 22309 chr3 198022430 + 32161545 32161823 AluSc 308 + 11 294 118878 53 1 6 224 chain 15903 chr3 198022430 + 32193492 32193719 Tigger4a 237 - 0 237 138645 63 3 5 42 4 12 115 chain 25729 chr3 198022430 + 32203872 32204143 AluYb9 318 - 14 285 101173 271 chain 134469 chr3 198022430 + 32210590 32212102 SVA_D 2077 + 42 2074 27116 645 0 40 21 1 38 129 6 43 21 0 3 16 0 403 673 chain 38787 chr3 198022430 + 32249259 32249787 MLT2A2 560 - 0 560 71030 69 0 1 77 1 13 194 0 1 6 32 46 134 0 4 15 chain 64939 chr3 198022430 + 32249787 32250622 HERVL-int 5654 - 0 832 50599 221 4 0 8 2 0 65 0 1 4 6 9 119 0 1 8 5 0 320 0 3 73 chain 490397 chr3 198022430 + 32304490 32310095 L1PA5 6144 + 0 6143 7344 93 33 558 215 0 2 1007 3 0 123 0 2 313 1 0 1699 0 1 336 0 4 944 0 4 62 7 9 98 0 2 509 18 18 144 chain 42148 chr3 198022430 + 32311781 32312259 L1PA4 6152 + 5560 6038 66455 478 chain 9910 chr3 198022430 + 32312259 32312371 L1PA4 6152 + 6039 6151 161015 112 chain 74633 chr3 198022430 + 32320672 32321487 L1PA2 6032 - 3 818 46192 815 chain 3239 chr3 198022430 + 32321487 32321525 L1P1 4361 + 2521 2559 220235 38 chain 15401 chr3 198022430 + 32328154 32328375 MER30 238 - 0 238 140197 39 3 0 70 6 0 7 3 29 93 chain 2825 chr3 198022430 + 32375772 32375806 L1MC2 1988 + 1953 1988 228300 4 0 1 30 chain 3131 chr3 198022430 + 32424569 32424605 MLT1G3 592 + 5 41 222350 36 chain 23725 chr3 198022430 + 32502438 32502860 LTR7 482 - 8 482 111905 41 12 14 35 0 2 85 1 32 40 0 1 60 54 6 11 0 3 29 8 46 11 4 27 31 chain 280846 chr3 198022430 + 32504644 32507999 HERVH-int 3825 - 0 3825 14592 175 0 43 269 8 218 39 9 11 926 0 4 38 5 10 88 0 4 619 0 1 4 1 0 146 1 4 72 0 2 372 0 1 14 0 2 6 0 1 84 14 201 91 0 4 174 0 2 200 chain 24234 chr3 198022430 + 32508001 32508407 LTR7 482 - 0 482 109028 49 12 14 52 1 2 57 0 3 13 0 31 36 0 1 44 51 0 16 6 95 69 chain 21921 chr3 198022430 + 32563142 32563408 AluSq2 311 + 4 271 120542 127 1 2 138 chain 5979 chr3 198022430 + 32589277 32589359 L1MA8 2339 + 1823 1901 185433 17 4 0 61 chain 82697 chr3 198022430 + 32620072 32621334 LTR12C 1709 + 0 1709 42458 24 0 9 266 0 2 163 0 37 72 0 1 76 0 278 143 0 47 27 4 3 67 44 13 163 132 0 21 3 236 13 0 4 44 chain 23709 chr3 198022430 + 32632462 32632740 AluSq2 311 + 18 297 111988 115 0 1 163 chain 3762 chr3 198022430 + 32645234 32645277 MLT2B1 522 - 0 43 210941 43 chain 7516 chr3 198022430 + 32646903 32646999 MER67C 710 + 347 442 174067 15 1 0 80 chain 3029 chr3 198022430 + 32652267 32652299 LTR67B 553 + 50 82 224408 32 chain 15977 chr3 198022430 + 32661201 32661512 L1PB1 5432 - 10 293 138423 14 5 4 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 39 27 44 1 0 69 2 0 9 2 0 3 2 0 12 1 0 5 chain 111851 chr3 198022430 + 32666962 32668612 LTR12C 1709 + 0 1693 33704 18 0 14 27 25 25 183 1 0 6 10 6 95 0 11 79 0 3 6 23 19 158 0 119 57 12 11 275 1 0 8 2 0 104 11 4 144 112 24 43 0 1 70 0 4 36 0 1 11 1 0 63 1 0 68 chain 5913 chr3 198022430 + 32668212 32668319 LTR12C 1709 + 1373 1498 176186 7 0 17 33 9 10 58 chain 6613 chr3 198022430 + 32674834 32674919 L1MC 810 - 53 137 180353 27 1 0 57 chain 30975 chr3 198022430 + 32683381 32683724 L1PA4 6152 - 13 356 82557 343 chain 47998 chr3 198022430 + 32687148 32687693 L1PA4 6152 + 5595 6143 60491 205 0 1 95 1 2 140 0 1 104 chain 4132 chr3 198022430 + 32687831 32687916 MER34C_ 573 + 414 500 205472 28 24 25 33 chain 11513 chr3 198022430 + 32688795 32688928 L1PA5 6144 + 5802 5935 154238 133 chain 17075 chr3 198022430 + 32688928 32689118 L1PA5 6144 + 5945 6135 135393 190 chain 5396 chr3 198022430 + 32690942 32691197 L1MB7 1623 - 26 235 191021 24 106 86 8 1 0 27 51 26 38 chain 3815 chr3 198022430 + 32692914 32692981 Tigger3b 1229 + 0 97 210172 16 9 39 42 chain 25664 chr3 198022430 + 32702665 32703010 L1PA8 5853 + 5506 5853 101431 58 1 0 9 1 0 36 2 0 71 7 15 45 2 1 21 1 0 91 chain 129768 chr3 198022430 + 32704938 32706381 SVA_D 2077 + 3 2077 28139 6 1 0 10 0 5 5 1 0 746 0 80 61 1 539 274 0 10 338 chain 4242 chr3 198022430 + 32710570 32710620 Tigger1 2417 - 540 590 203988 50 chain 48319 chr3 198022430 + 32714841 32715610 LTR12_ 688 - 0 679 60230 212 100 0 160 59 69 238 chain 23142 chr3 198022430 + 32718177 32718439 AluSc 308 - 14 276 114927 262 chain 12467 chr3 198022430 + 32720632 32720783 HSMAR2 1300 - 244 395 150389 151 chain 2953 chr3 198022430 + 32725557 32725590 L1MC3 1789 + 1337 1370 226014 33 chain 5633 chr3 198022430 + 32735666 32735732 U3 216 - 150 216 188734 66 chain 29550 chr3 198022430 + 32771249 32771559 AluYa5 310 - 0 310 86417 310 chain 26834 chr3 198022430 + 32787714 32788450 MER1A 529 - 7 428 96857 25 40 41 5 2 0 243 328 13 60 8 9 25 chain 3130 chr3 198022430 + 32796336 32796371 MER66B 489 + 295 330 222359 35 chain 37829 chr3 198022430 + 32818471 32818999 MER41A 554 + 0 554 72367 85 12 5 32 1 4 99 1 9 193 0 1 41 26 47 38 chain 13791 chr3 198022430 + 32837297 32837458 HERVH-int 3825 - 2896 3056 145301 151 1 0 9 chain 7607 chr3 198022430 + 32840146 32840278 MLT1A0 366 - 241 365 173503 25 1 2 21 7 0 47 9 7 22 chain 27669 chr3 198022430 + 32851450 32851760 AluYf4 310 - 0 310 94152 310 chain 18687 chr3 198022430 + 32865319 32865543 AluSc 308 + 36 257 130976 92 3 0 129 chain 15863 chr3 198022430 + 32896457 32896700 MER44A 345 + 107 345 138768 27 19 11 33 0 3 12 1 0 120 0 1 31 chain 136477 chr3 198022430 + 32944103 32945867 LTR12C 1709 + 0 1709 26749 436 0 1 169 24 6 225 1 0 15 78 0 25 0 18 216 1 0 5 3 1 107 0 4 52 0 23 157 5 4 245 chain 7007 chr3 198022430 + 32944973 32945051 LTR12C 1709 + 734 812 136379 78 chain 38377 chr3 198022430 + 32969612 32970244 L1PB2 3958 - 120 738 71604 46 9 7 6 0 5 16 0 2 6 4 0 71 1 0 6 6 5 13 1 0 23 30 29 151 4 0 13 0 2 63 18 11 56 2 0 87 chain 18658 chr3 198022430 + 32970244 32971190 THE1B 368 + 0 349 131059 44 0 15 49 4 3 50 353 65 68 1 0 4 322 0 51 chain 119010 chr3 198022430 + 32971211 32972779 THE1B-int 1605 + 0 1600 31405 113 1 4 123 0 1 190 0 25 88 0 3 274 1 2 27 0 8 152 0 13 12 23 10 30 10 0 453 0 1 71 chain 23268 chr3 198022430 + 32972784 32973109 THE1B 368 + 0 357 114349 44 11 47 81 1 0 30 2 0 91 1 0 64 chain 130017 chr3 198022430 + 32980992 32982640 LTR12C 1709 + 0 1702 28085 437 0 1 223 8 10 141 0 40 259 1 0 6 2 0 107 0 4 56 0 1 96 2 4 126 3 5 5 3 0 32 23 30 49 0 1 69 chain 25678 chr3 198022430 + 32987542 32987849 AluSp 311 - 2 309 101375 307 chain 23871 chr3 198022430 + 32996766 32997047 AluSp 311 + 20 300 111076 105 1 0 175 chain 19449 chr3 198022430 + 33008152 33008452 THE1B 368 + 0 310 128823 105 8 9 55 1 0 19 9 12 10 0 4 10 7 6 69 0 4 7 chain 10363 chr3 198022430 + 33009030 33009166 LTR15 485 + 347 480 158856 35 3 4 50 4 0 44 chain 38234 chr3 198022430 + 33014242 33014714 LTR15 485 + 2 480 71795 100 0 1 4 3 7 167 0 4 64 0 1 87 4 0 43 chain 3249 chr3 198022430 + 33071770 33071807 U2 167 - 130 167 220018 37 chain 5458 chr3 198022430 + 33110904 33111047 LTR37B 484 + 8 154 190441 53 60 63 30 chain 11723 chr3 198022430 + 33136784 33136942 AluY 311 + 57 207 153369 76 22 14 60 chain 23620 chr3 198022430 + 33144518 33144806 7SLRNA 320 + 19 307 112473 288 chain 2993 chr3 198022430 + 33152657 33152855 L1MC4 1079 + 585 745 225147 35 146 108 17 chain 9029 chr3 198022430 + 33218608 33218737 MER85 139 - 0 139 165444 29 7 17 93 chain 23618 chr3 198022430 + 33222496 33223397 Tigger3b 1229 + 578 1175 112486 12 0 1 7 0 2 17 0 142 12 124 0 108 401 64 37 0 10 90 30 32 63 chain 23521 chr3 198022430 + 33229158 33229413 L1PA4 6152 - 12 267 113012 255 chain 24240 chr3 198022430 + 33276131 33276410 AluY 311 + 0 282 108994 70 0 3 209 chain 28769 chr3 198022430 + 33300947 33301251 AluYf4 310 + 0 304 90024 304 chain 23923 chr3 198022430 + 33303943 33304254 AluSp 311 + 0 310 110792 40 18 17 253 chain 45919 chr3 198022430 + 33304271 33304864 L1PB1 5432 - 1726 2317 62114 4 1 0 329 1 0 258 chain 21733 chr3 198022430 + 33307523 33307866 THE1A 353 - 12 353 121266 55 0 1 159 52 50 28 0 1 34 2 0 13 chain 122952 chr3 198022430 + 33307866 33309400 THE1A-int 1579 - 0 1548 30066 559 3 2 901 19 20 30 0 14 22 chain 27052 chr3 198022430 + 33312551 33313131 LTR18B 584 - 25 584 96107 38 7 0 33 0 1 19 1 0 21 15 0 22 61 44 44 0 2 15 24 37 24 4 0 24 1 7 15 50 43 18 5 14 18 1 0 120 chain 525518 chr3 198022430 + 33322547 33328645 L1PA5 6144 - 4 6144 4623 96 0 5 747 1 0 2116 1 0 333 5 8 109 0 1 388 8 9 13 0 1 116 0 4 756 0 4 264 9 0 26 0 8 699 0 2 5 18 16 245 4 16 14 1 15 124 chain 191828 chr3 198022430 + 33364805 33367056 L1PA7 6471 - 2 2273 19878 146 1 2 184 0 1 155 0 2 350 1 5 1003 5 17 406 chain 162181 chr3 198022430 + 33388878 33391264 L1MA2 4263 - 212 2505 23036 82 4 3 9 2 1 93 1 0 57 13 10 96 0 1 37 1 0 29 0 2 46 5 1 10 3 0 249 1 0 182 17 26 33 0 2 6 0 6 123 2 0 43 1 0 90 94 0 33 34 24 29 8 9 17 20 13 20 0 2 23 2 0 220 0 1 60 0 11 382 3 0 5 4 11 168 5 4 24 chain 6418 chr3 198022430 + 33404141 33404212 L1PA3long 6157 + 6086 6157 181887 71 chain 5934 chr3 198022430 + 33441015 33441103 L1MD2 1676 + 1408 1496 185838 7 0 1 25 5 4 51 chain 4737 chr3 198022430 + 33476479 33476587 MER58C 217 + 79 213 198090 7 1 0 26 23 49 39 1 2 11 chain 43132 chr3 198022430 + 33487953 33488518 LTR12C 1709 + 1177 1709 65252 26 25 0 21 11 4 384 14 13 84 chain 414187 chr3 198022430 + 33488617 33493530 HERV9-int 5642 + 0 4824 9694 271 7 8 317 8 9 190 1 0 120 4 0 192 87 0 2185 1 0 949 0 1 573 0 1 8 chain 6635 chr3 198022430 + 33489728 33489807 HERV9-int 5642 + 1028 1107 180205 79 chain 121687 chr3 198022430 + 33494768 33496479 LTR12C 1709 + 0 1709 30486 121 3 13 242 9 4 84 6 4 149 0 12 50 41 0 158 1 0 238 0 49 84 46 20 282 0 4 65 12 11 22 47 46 51 chain 3333 chr3 198022430 + 33495432 33495473 LTR12C 1709 + 798 838 86604 39 1 0 1 chain 8446 chr3 198022430 + 33498579 33498676 MER50B 698 - 66 163 168593 97 chain 55244 chr3 198022430 + 33504438 33506301 MER4E1 777 + 0 768 55557 188 0 1 105 1 2 69 2 1 22 3 2 28 1118 13 32 0 1 46 1 0 31 1 9 203 0 2 13 chain 29920 chr3 198022430 + 33504986 33505436 LTR7B 505 - 10 505 85045 41 14 13 76 1 0 85 29 0 28 6 68 66 0 10 16 0 3 42 7 8 39 chain 19938 chr3 198022430 + 33509293 33509600 MER61C 433 - 127 433 127339 13 1 4 72 1 0 52 12 14 79 11 6 4 0 1 46 1 0 15 chain 18742 chr3 198022430 + 33512968 33513228 MER65A 464 - 135 405 130847 11 2 0 171 7 19 69 chain 25529 chr3 198022430 + 33518880 33519192 AluYf4 310 + 0 308 102104 6 0 1 206 1 0 17 2 0 36 2 0 42 chain 6692 chr3 198022430 + 33520169 33520250 L1MA5A 2387 + 829 910 179744 81 chain 8420 chr3 198022430 + 33524315 33524439 MER65A 464 - 2 128 168727 18 0 2 21 3 4 6 1 0 75 chain 30993 chr3 198022430 + 33525154 33525519 L1PA6 6164 - 2 345 82530 331 22 0 12 chain 4329 chr3 198022430 + 33527579 33527683 MER5A1 166 - 1 79 202847 34 41 15 29 chain 80932 chr3 198022430 + 33553205 33554062 L1HS 6032 + 5175 6032 43226 857 chain 29000 chr3 198022430 + 33556110 33556702 L1PB1 5432 + 4910 5422 88981 25 0 1 178 50 0 21 1 0 11 1 0 9 8 4 9 2 0 5 7 6 41 2 1 10 6 5 35 0 1 8 1 0 16 1 0 4 19 8 18 34 29 15 1 0 22 1 0 12 1 0 18 chain 8390 chr3 198022430 + 33571071 33571180 Tigger3b 1229 - 668 780 168909 73 3 6 33 chain 28831 chr3 198022430 + 33571191 33571503 AluYb8 318 + 0 315 89758 132 0 3 180 chain 27445 chr3 198022430 + 33612507 33612804 AluYf4 310 - 12 310 94834 94 0 1 203 chain 7119 chr3 198022430 + 33643768 33643855 Tigger4a 237 - 150 237 176627 87 chain 4857 chr3 198022430 + 33646983 33647040 MER96 175 - 110 167 196704 57 chain 8142 chr3 198022430 + 33654283 33654526 L1MA4 2864 + 2596 2810 170279 30 0 2 11 2 0 26 16 13 16 1 0 7 93 68 41 chain 11779 chr3 198022430 + 33666023 33666302 MER44A 345 - 33 345 153139 53 4 6 7 0 1 56 19 29 41 1 0 9 71 92 18 chain 12887 chr3 198022430 + 33666678 33666832 L1PA5 6144 + 5978 6135 148680 11 0 1 52 0 1 22 0 1 69 chain 553889 chr3 198022430 + 33712946 33719204 L1PA3long 6157 + 1 6157 963 1185 4 7 1816 1 9 219 1 0 709 0 1 413 0 4 306 0 1 247 120 0 1195 0 2 42 chain 31300 chr3 198022430 + 33753128 33753642 L1PB2 3958 + 3330 3838 81993 30 0 3 11 9 0 64 3 1 12 4 0 92 16 15 8 3 0 4 1 0 37 10 27 27 2 0 20 2 1 64 12 10 19 1 0 63 chain 3229 chr3 198022430 + 33761969 33762003 MLT2B1 522 + 488 522 220448 34 chain 4253 chr3 198022430 + 33784751 33784901 L1MC4 1079 + 842 979 203841 36 83 71 24 1 0 6 chain 40395 chr3 198022430 + 33807160 33808574 L1MA1 4479 + 3360 4190 68743 29 3 0 12 1 0 35 615 45 11 1 0 28 3 0 39 0 1 39 4 28 89 2 1 22 2 0 17 1 0 4 10 12 49 13 12 12 2 0 102 1 0 5 3 0 54 95 85 16 2 0 35 1 0 9 1 0 5 3 0 14 5 0 20 chain 30994 chr3 198022430 + 33807308 33807739 L1PA8A 6298 + 5881 6291 82527 307 39 18 85 chain 3562 chr3 198022430 + 33872749 33872812 LTR37B 484 - 25 96 214292 19 10 18 34 chain 25243 chr3 198022430 + 33902639 33902931 AluSg7 307 - 12 306 103514 163 0 1 25 0 1 104 chain 6047 chr3 198022430 + 33920073 33920166 LTR21B 408 + 307 402 184835 39 12 14 42 chain 36119 chr3 198022430 + 33920541 33921004 MER4A1 472 - 11 472 74741 125 0 1 72 0 1 30 1 2 216 5 0 14 chain 83737 chr3 198022430 + 33934694 33935810 L1PB3 3668 - 1050 2155 42021 71 1 0 59 2 1 377 5 0 280 0 1 49 3 5 115 8 0 36 7 8 103 chain 26568 chr3 198022430 + 33948723 33949026 AluYk4 311 - 8 311 97773 303 chain 28269 chr3 198022430 + 33976385 33976687 AluYa5 310 - 9 310 92050 208 1 0 93 chain 7065 chr3 198022430 + 33990871 33991033 LTR16A1 462 + 259 416 176988 61 59 56 35 2 0 5 chain 521099 chr3 198022430 + 34006181 34012266 L1PA5 6144 - 0 6144 5043 9 2 0 352 2 0 5 0 3 481 1 0 516 21 28 726 0 3 130 0 1 55 0 1 5 1 0 670 0 1 824 0 2 33 1 0 1128 9 0 642 4 0 48 1 48 288 0 14 131 chain 3316 chr3 198022430 + 34015982 34016020 Tigger3b 1229 - 248 286 218665 38 chain 474208 chr3 198022430 + 34024332 34031244 L1PA8A 6298 - 7 6219 7904 107 1 2 5 1 0 47 0 12 109 0 1 7 1 0 98 436 20 313 0 2 73 1 6 265 1 0 571 1 0 49 2 3 192 4 9 271 0 1 256 0 1 170 1 2 90 0 1 133 2 0 33 0 3 25 0 1 71 0 3 82 1 0 288 0 1 200 6 10 23 1 0 359 0 4 89 1 10 249 295 0 28 6 0 99 1 0 253 0 1 271 5 4 116 0 8 103 0 1 18 0 3 13 0 4 327 8 6 145 0 3 74 15 17 19 6 5 71 4 2 7 1 0 22 2 0 42 1 0 21 12 6 5 2 0 22 1 0 42 2 0 7 5 0 17 2 1 6 1 0 6 1 0 8 1 0 13 7 4 14 3 1 12 1 0 7 2 1 11 2 1 9 1 0 21 19 9 17 4 1 21 chain 30594 chr3 198022430 + 34024714 34025133 L1PA8 5853 + 5437 5850 83208 127 1 0 44 2 0 70 2 1 14 20 20 27 2 1 19 1 0 90 chain 123262 chr3 198022430 + 34036648 34038191 THE1C-int 1605 - 6 1605 29955 847 6 0 103 0 2 4 1 0 191 5 12 259 0 54 127 chain 24854 chr3 198022430 + 34038860 34039156 AluY 311 + 6 305 105599 126 0 1 147 0 2 23 chain 4930 chr3 198022430 + 34057711 34057806 MER58B 340 - 15 108 195939 6 1 0 54 22 21 12 chain 187054 chr3 198022430 + 34100440 34102971 L1PA7 6471 + 4158 6450 20329 135 0 1 144 0 5 344 5 5 299 6 7 80 0 1 100 0 4 35 0 1 283 15 9 184 247 0 343 0 1 311 chain 4243 chr3 198022430 + 34117587 34117711 SVA_F 1814 - 1278 1439 203967 27 5 81 32 47 8 13 chain 521273 chr3 198022430 + 34121203 34127336 L1PA5 6144 - 1 6144 5032 12 3 0 129 0 6 6 7 1 502 0 2 1137 0 4 348 1 3 68 1 0 31 1 0 615 8 6 2016 0 1 87 15 6 25 0 2 567 0 1 433 7 21 114 chain 14305 chr3 198022430 + 34127509 34127802 L1MA5A 2387 - 91 347 143547 28 1 0 20 1 0 4 0 1 11 28 0 12 8 5 34 1 0 24 2 0 49 1 0 18 22 21 29 chain 232826 chr3 198022430 + 34129330 34132040 L1PA3long 6157 - 0 6151 17148 857 1 0 85 9 10 541 1 2 556 9 3448 173 2 3 476 chain 534711 chr3 198022430 + 34135578 34141705 L1PA4 6152 + 13 6143 3629 819 17 0 7 1 18 179 1 0 2735 2 3 800 0 1 1116 0 2 450 chain 12154 chr3 198022430 + 34155903 34156088 L1MA3 4352 - 42 218 151592 22 1 0 5 2 1 23 2 0 24 4 0 18 1 0 83 chain 508705 chr3 198022430 + 34157576 34164214 L1PA6 6164 - 3 6164 6265 151 7 6 622 0 12 54 1 5 59 1 0 832 0 1 218 0 1 248 2 0 11 0 1 244 1 0 70 17 12 440 3 5 788 496 0 56 3 0 50 0 3 272 0 4 122 2 0 917 5 6 201 6 7 107 15 26 100 0 1 272 15 7 230 chain 115994 chr3 198022430 + 34168026 34169915 L1PA11 4918 + 3004 4578 32459 180 16 15 341 0 1 51 313 10 58 1 0 99 0 10 562 1 0 62 2 1 13 2 0 7 4 3 55 2 0 16 1 0 20 1 0 9 31 22 15 1 0 13 2 0 11 chain 39777 chr3 198022430 + 34186108 34186609 LTR10F 562 + 2 562 69657 121 0 4 46 0 21 23 0 14 10 0 24 8 4 0 289 chain 57234 chr3 198022430 + 34199483 34200407 L1PA7 6471 - 7 678 54379 148 0 1 297 255 1 224 chain 19987 chr3 198022430 + 34199928 34200183 AluY 311 + 53 302 127181 80 1 0 15 0 4 26 0 1 115 10 0 8 chain 13283 chr3 198022430 + 34202176 34202364 Tigger3a 397 - 72 254 147161 71 3 0 58 8 4 8 0 1 40 chain 7938 chr3 198022430 + 34207849 34207943 L1PA8A 6298 + 6197 6291 171400 94 chain 5626 chr3 198022430 + 34212999 34213064 L1PA8A 6298 - 244 309 188821 65 chain 92949 chr3 198022430 + 34213334 34214623 L1PA8 5853 - 0 1307 38670 92 7 6 13 1 0 23 32 31 8 1 0 70 2 0 13 3 33 271 0 1 4 1 0 19 11 12 184 2 3 63 9 1 118 1 0 311 0 1 30 chain 97030 chr3 198022430 + 34214623 34216137 L1PBa 3878 - 2342 3793 37556 44 3 0 7 0 3 13 0 4 25 1 0 6 0 1 191 28 29 170 1 0 59 7 0 64 0 4 35 9 2 109 4 0 248 1 0 56 12 13 4 1 0 66 7 0 7 0 7 90 3 0 6 0 3 33 2 0 24 1 0 24 1 3 21 85 37 26 3 2 10 2 0 5 chain 24288 chr3 198022430 + 34246978 34247283 AluY 311 + 0 305 108713 28 9 8 95 1 2 172 chain 41993 chr3 198022430 + 34346423 34346961 LTR12_ 688 + 0 688 66635 144 0 24 38 0 1 4 0 3 6 11 0 247 0 133 88 chain 12083 chr3 198022430 + 34356897 34357066 L1MA1 4479 - 342 508 151866 29 3 1 29 1 0 107 chain 38179 chr3 198022430 + 34385486 34386176 L1MA2 4263 + 3462 4102 71870 15 8 6 24 0 1 74 2 0 8 2 0 72 1 0 7 15 0 34 10 0 26 20 13 16 20 20 18 15 12 148 11 9 93 22 15 29 chain 118796 chr3 198022430 + 34411367 34412899 THE1A-int 1579 + 0 1574 31489 83 0 1 567 0 2 165 1 0 96 3 5 198 16 17 38 0 1 172 0 36 193 chain 19534 chr3 198022430 + 34432810 34433117 L1PB3 3668 + 3274 3559 128556 16 1 0 101 1 0 87 23 7 18 2 0 25 3 1 30 chain 4045 chr3 198022430 + 34445928 34445977 MLT1E1A 663 + 507 558 206733 26 0 2 23 chain 26956 chr3 198022430 + 34446231 34446527 L1PA4 6152 + 5712 6008 96422 296 chain 12905 chr3 198022430 + 34446527 34446669 L1PA4 6152 + 6009 6151 148608 142 chain 555223 chr3 198022430 + 34454635 34460664 L1PA2 6032 - 0 6032 800 2893 0 1 2427 0 1 499 0 1 210 chain 539339 chr3 198022430 + 34469228 34475377 L1PA4 6152 - 0 6152 2921 8 0 1 7 6 0 210 0 1 13 0 1 2746 1 0 44 0 1 286 0 2 651 0 2 28 0 1 932 0 1 1217 chain 66355 chr3 198022430 + 34495594 34496499 L1PA8 5853 - 0 893 49928 18 15 23 52 1 0 16 1 0 52 19 17 21 1 0 46 2 0 46 1 0 41 1 0 178 8 0 210 4 0 45 1 4 75 2 0 49 chain 12525 chr3 198022430 + 34507052 34507796 L1PA7 6471 - 9 756 27923 133 0 4 194 1 0 416 chain 495507 chr3 198022430 + 34507832 34513856 L1PA6 6164 - 15 6164 7099 49 4 0 74 4 8 54 4 5 50 0 1 81 0 1 103 0 1 169 8 2 167 1 13 63 2 0 12 0 4 38 0 1 951 0 2 133 0 3 106 1 0 82 1 11 1858 0 1 383 0 1 260 0 1 372 0 3 19 0 1 150 0 1 75 16 101 172 1 0 47 1 3 195 1 0 4 4 6 72 1 3 123 0 1 113 chain 15993 chr3 198022430 + 34513866 34514816 L1PA7 6471 - 756 1707 27923 94 1 0 333 0 2 522 chain 57298 chr3 198022430 + 34554204 34554862 L1PA4 6152 - 1 649 54338 5 2 0 333 0 1 21 9 0 288 chain 6902 chr3 198022430 + 34558793 34558896 L1PA16 3655 + 3484 3584 178171 19 1 3 5 2 0 66 3 0 7 chain 54138 chr3 198022430 + 34560210 34560912 LTR12 884 - 15 884 56272 91 1 34 16 0 103 225 0 22 149 0 25 122 15 0 57 1 0 25 chain 245985 chr3 198022430 + 34562226 34565334 HERV9-int 5642 - 818 5642 16451 8 0 1 5 1 2 163 9 1804 335 0 7 177 1 0 4 0 1 664 1 0 241 0 3 303 2 0 3 80 0 242 1 0 66 1 0 61 4 5 13 6 0 80 0 2 34 8 5 595 chain 53027 chr3 198022430 + 34565377 34566093 LTR12 884 - 15 884 57000 142 0 103 224 0 22 81 0 27 81 39 0 66 0 41 57 1 0 25 chain 11492 chr3 198022430 + 34582277 34582405 L1PA4 6152 + 5884 6013 154326 43 0 1 85 chain 11943 chr3 198022430 + 34582405 34582543 L1PA4 6152 + 6014 6152 152426 138 chain 120783 chr3 198022430 + 34601889 34603261 L1PA5 6144 + 4771 6142 30763 256 1 0 962 8 8 145 chain 6626 chr3 198022430 + 34639214 34639353 L1MB2 1706 + 1003 1138 180260 62 24 26 14 12 6 27 chain 13979 chr3 198022430 + 34650312 34650493 L1PA16 3655 - 1679 1860 144655 181 chain 44235 chr3 198022430 + 34658027 34658609 L1PA8A 6298 + 5493 6061 63905 10 0 1 29 14 0 107 22 21 400 chain 40686 chr3 198022430 + 34681947 34682398 LTR7 482 - 0 482 68316 187 0 31 264 chain 35336 chr3 198022430 + 34683564 34683973 HERVH-int 3825 - 705 1117 75758 25 0 3 384 chain 109035 chr3 198022430 + 34694358 34695514 L1HS 6032 - 2 1158 34364 1156 chain 250113 chr3 198022430 + 34695514 34698181 L1HS 6032 + 2190 4857 16246 2667 chain 38732 chr3 198022430 + 34720562 34721049 HERV1_LTRc 486 + 0 480 71105 27 3 0 65 1 2 337 6 1 48 chain 40924 chr3 198022430 + 34728027 34728517 HERV1_LTRc 486 + 0 486 68004 82 0 1 346 5 0 57 chain 4828 chr3 198022430 + 34734485 34734544 MLT1A 405 + 312 371 197040 59 chain 32474 chr3 198022430 + 34744098 34744528 THE1B-int 1605 - 1173 1605 80071 372 0 6 6 11 5 26 3 5 12 chain 29226 chr3 198022430 + 34748504 34749052 L1PA11 4918 + 3967 4517 87930 138 26 27 123 55 67 6 5 0 67 1 0 4 7 11 5 3 0 60 4 3 10 1 0 20 4 0 9 chain 206307 chr3 198022430 + 34775162 34778071 L1PA10 4194 + 1282 4161 18765 194 4 1 84 10 0 169 0 1 32 1 0 434 0 6 17 5 9 172 7 4 218 13 0 27 9 0 15 2 0 6 11 20 171 20 19 69 50 35 43 2 0 24 0 1 114 0 11 346 21 8 21 8 5 73 0 3 15 0 4 117 0 1 44 30 32 54 0 3 134 0 4 74 3 0 34 1 0 11 chain 28886 chr3 198022430 + 34797055 34797365 AluYa5 310 - 1 310 89506 183 1 0 126 chain 491399 chr3 198022430 + 34805128 34810718 L1PA4 6152 + 22 6143 7303 74 0 525 61 1 4 550 0 1 870 0 3 1099 2 1 730 0 1 1032 0 1 560 3 0 436 0 1 172 chain 2920 chr3 198022430 + 34829072 34829104 L1MC4 1079 - 222 254 226680 32 chain 12496 chr3 198022430 + 34866556 34866840 L1PB1 5432 + 5118 5422 150259 15 0 27 8 15 13 23 0 17 14 2 1 45 1 0 15 11 0 12 1 0 16 27 22 24 1 0 23 1 0 7 5 4 18 chain 29011 chr3 198022430 + 34895349 34895650 AluYb8 318 - 17 318 88938 301 chain 102019 chr3 198022430 + 34907575 34908707 L1P2 5180 + 1703 2835 36258 1132 chain 9002 chr3 198022430 + 34919187 34919328 THE1C-int 1605 + 1455 1599 165588 39 15 21 24 4 0 53 0 1 6 chain 21349 chr3 198022430 + 34919333 34919656 THE1C 375 + 0 335 122691 107 1 2 74 19 25 16 10 13 49 6 8 41 chain 17799 chr3 198022430 + 34936101 34936465 THE1B 368 - 0 368 133409 45 15 16 93 107 110 104 chain 512451 chr3 198022430 + 34945651 34951726 L1PA5 6144 + 0 6138 5924 121 0 14 18 3 15 84 5 6 156 17 13 173 4 16 425 0 1 127 9 0 667 0 1 335 0 2 139 0 1 850 2 1 133 1 4 386 0 11 375 1 0 1763 0 16 136 5 9 140 chain 28884 chr3 198022430 + 34954592 34954892 AluYa8 305 + 0 300 89522 300 chain 28228 chr3 198022430 + 34965449 34965803 L1PA7 6471 - 6 366 92199 312 4 10 38 chain 38141 chr3 198022430 + 34965804 34966261 L1PA7 6471 + 5593 6047 71927 29 3 0 425 chain 9687 chr3 198022430 + 35000336 35000472 L1PB4 2604 - 52 181 162165 103 7 0 26 chain 54153 chr3 198022430 + 35015692 35016322 L1PA5 6144 - 6 636 56261 630 chain 141360 chr3 198022430 + 35017120 35018821 L1PA7 6471 - 4 1712 25928 18 2 3 162 0 3 173 1 0 484 0 3 127 0 1 380 0 1 157 1 0 196 chain 9073 chr3 198022430 + 35023771 35023906 L1PA8 5853 - 0 134 165198 68 0 1 24 1 0 19 5 4 18 chain 131025 chr3 198022430 + 35029673 35031270 LTR12C 1709 + 0 1709 27854 282 13 1 155 1 0 212 0 119 68 1 0 275 1 0 5 3 1 75 0 7 24 0 4 399 1 0 82 chain 30336 chr3 198022430 + 35051668 35051985 AluYb8 318 - 1 318 83823 317 chain 187413 chr3 198022430 + 35055826 35057886 L1PA3long 6157 - 0 2060 20300 2060 chain 18602 chr3 198022430 + 35068535 35068867 THE1B 368 - 0 368 131220 118 30 52 26 10 9 81 26 41 41 chain 30723 chr3 198022430 + 35070301 35070698 THE1B-int 1605 - 1207 1604 82998 347 2 3 7 1 0 40 chain 19533 chr3 198022430 + 35070699 35071043 THE1B 368 - 0 368 128562 118 42 52 26 10 9 80 24 39 44 chain 114472 chr3 198022430 + 35073542 35074822 L1PA3long 6157 - 0 1284 32953 148 0 1 430 1 2 261 0 1 7 0 1 433 chain 6739 chr3 198022430 + 35078601 35078699 L1MB8 1703 - 117 225 179403 58 4 14 36 chain 19314 chr3 198022430 + 35097510 35097760 AluYf4 310 - 10 310 129201 107 0 51 14 2 3 61 2 0 64 chain 374287 chr3 198022430 + 35130828 35136272 L1PB1 5432 + 25 5419 10950 12 8 10 40 12 56 52 5 8 270 3 1 70 3 1 4 1 0 43 49 51 13 8 12 604 1 0 102 1 0 29 5 0 276 1 0 615 2 0 203 5 6 160 6 7 42 0 3 119 1 0 57 0 3 31 0 1 249 1 0 30 6 10 144 0 1 291 2 0 5 1 3 61 0 1 259 31 25 7 0 2 109 0 4 170 0 4 325 3 0 31 6 7 41 0 2 6 7 9 59 1 0 183 0 1 60 157 70 8 0 3 32 1 0 8 1 0 12 4 0 11 3 1 48 2 1 13 5 4 41 81 69 24 1 0 17 5 4 13 5 4 11 chain 98045 chr3 198022430 + 35142817 35143926 L1PA4 6152 - 9 1121 37266 753 1 0 88 0 4 267 chain 532859 chr3 198022430 + 35145404 35151413 L1PA3long 6157 + 0 6146 3867 152 6 7 115 1 0 502 0 128 2358 0 1 1327 0 2 718 0 4 665 0 1 21 4 5 140 chain 28810 chr3 198022430 + 35169269 35169591 L1PA3long 6157 - 724 1047 89842 54 0 1 268 chain 16537 chr3 198022430 + 35169591 35169769 L1PA3long 6157 + 5510 5688 136820 178 chain 41475 chr3 198022430 + 35169769 35170234 L1PA3long 6157 + 5690 6157 67317 448 1 3 16 chain 16424 chr3 198022430 + 35171449 35171821 THE1C 375 - 0 375 137142 25 1 0 89 11 13 25 54 56 42 18 12 27 32 39 20 1 0 27 chain 13626 chr3 198022430 + 35177065 35177215 L1PA4 6152 - 9 159 145879 150 chain 55165 chr3 198022430 + 35183062 35183754 HERVL-int 5654 - 1901 2592 55606 152 7 4 338 0 1 37 6 7 152 chain 15311 chr3 198022430 + 35188143 35188315 L1PA5 6144 - 2 174 140459 172 chain 15517 chr3 198022430 + 35190545 35190744 MER107 203 + 0 203 139836 25 1 0 123 1 6 49 chain 32301 chr3 198022430 + 35195744 35196153 L1PREC2 3366 - 1060 1471 80363 352 0 2 57 chain 411523 chr3 198022430 + 35208664 35214270 L1PA8 5853 - 0 5801 9759 76 6 7 10 1 0 16 1 0 57 1 0 8 2 1 61 11 9 44 1 0 190 6 5 157 18 214 259 1 0 388 0 1 614 0 3 61 0 13 293 0 7 132 0 1 4 10 1 149 4 6 69 0 1 21 0 1 54 0 1 5 1 0 31 1 0 11 4 11 22 0 3 310 0 1 183 12 5 257 0 1 522 0 5 485 6 14 88 1 0 205 1 10 87 8 9 346 23 10 10 0 4 10 117 114 52 39 15 11 1 0 10 2 0 20 chain 71464 chr3 198022430 + 35214572 35215444 MER11D 897 + 0 897 47709 242 7 5 255 1 3 15 1 3 70 4 27 277 chain 36690 chr3 198022430 + 35223508 35223995 THE1C-int 1605 - 1110 1605 73972 43 0 7 9 5 4 415 3 5 12 chain 5815 chr3 198022430 + 35228566 35228634 MLT2D 439 + 1 69 186997 68 chain 541926 chr3 198022430 + 35267309 35273430 L1PA4 6152 + 3 6146 2521 950 0 1 503 0 1 124 0 1 1792 0 1 980 0 4 1012 1 0 703 0 15 56 chain 40629 chr3 198022430 + 35281919 35282364 L1PA4 6152 + 5706 6151 68400 445 chain 111547 chr3 198022430 + 35294086 35295577 L1PA11 4918 + 3002 4504 33797 84 1 0 95 0 4 481 1 0 30 1 0 231 0 2 19 1 0 104 3 4 55 0 1 200 6 7 8 0 12 54 3 2 12 3 0 6 0 1 58 2 0 15 2 1 16 chain 16103 chr3 198022430 + 35301800 35301987 L1PA4 6152 - 348 535 138045 187 chain 32170 chr3 198022430 + 35301987 35302346 L1PA4 6152 + 5792 6151 80582 359 chain 45599 chr3 198022430 + 35311145 35311653 L1PA5 6144 + 5627 6135 62404 508 chain 113657 chr3 198022430 + 35323749 35325237 L1PA11 4918 + 3026 4508 33186 208 0 1 81 13 16 4 1 0 37 0 1 290 1 0 263 0 2 144 3 1 254 6 0 65 2 1 12 1 2 64 2 0 16 1 0 20 chain 64585 chr3 198022430 + 35345407 35346116 L1PA3long 6157 + 5448 6157 50758 709 chain 29868 chr3 198022430 + 35457965 35458283 AluYb8 318 - 0 318 85223 318 chain 21883 chr3 198022430 + 35467536 35467811 AluY 311 + 20 304 120697 112 0 1 96 8 16 59 chain 3519 chr3 198022430 + 35479569 35479622 MER4D 903 + 840 895 215082 6 0 1 25 1 0 15 0 2 6 chain 317107 chr3 198022430 + 35496109 35499788 L1P1 4361 + 2 3850 12723 572 1 0 118 7 0 215 0 173 98 0 2 1597 0 1 725 0 1 346 chain 56866 chr3 198022430 + 35509990 35510840 LTR12 884 - 0 878 54625 84 1 0 192 5 1 4 0 1 39 89 0 69 0 17 99 2 0 181 0 107 66 1 0 18 chain 5382 chr3 198022430 + 35510325 35510385 LTR12 884 - 237 297 191169 60 chain 503966 chr3 198022430 + 35518881 35524752 L1PA5 6144 - 16 6141 6605 174 0 1 68 8 9 168 1 0 717 0 1 181 0 5 1590 0 1 149 0 1 1352 0 1 296 1 6 86 25 25 10 0 237 182 0 1 389 0 1 474 chain 90123 chr3 198022430 + 35548773 35549896 L1PA8A 6298 + 5173 6291 39602 78 1 0 151 7 0 89 5 8 151 1 0 409 0 1 231 chain 88179 chr3 198022430 + 35557850 35558841 L1PA4 6152 - 13 1004 40310 100 0 1 140 1 0 750 chain 5425 chr3 198022430 + 35586346 35586469 MER61B 427 - 0 130 190759 29 1 0 29 30 40 12 2 1 13 1 0 6 chain 136438 chr3 198022430 + 35586537 35588695 MER61-int 3695 - 0 2054 26757 39 39 0 12 19 1 108 13 14 32 0 1 58 1 0 5 22 20 17 11 8 18 18 8 11 12 11 181 3 0 70 0 1 71 32 31 27 15 13 38 1 0 23 48 47 52 8 13 152 13 0 34 0 5 332 0 1 76 0 4 29 20 1 178 5 0 159 1 0 9 4 0 78 5 6 33 0 1 26 chain 11589 chr3 198022430 + 35628951 35629103 L1PA8 5853 - 12 163 153933 78 1 0 73 chain 80195 chr3 198022430 + 35629110 35630093 L1PA8 5853 + 4702 5687 43506 13 0 3 288 6 7 209 0 1 335 5 4 46 1 0 74 1 0 5 chain 72184 chr3 198022430 + 35635281 35636109 L1PA5 6144 + 5320 6144 47385 490 0 1 161 0 1 58 1 0 107 5 0 6 chain 17284 chr3 198022430 + 35641989 35642251 L1PA8 5853 - 0 231 134824 90 9 0 3 19 0 19 2 1 52 1 0 9 1 0 57 chain 68576 chr3 198022430 + 35651153 35651938 L1PA4 6152 - 4148 4933 48998 785 chain 361502 chr3 198022430 + 35651938 35656063 L1PA4 6152 + 2019 6143 11326 604 6 4 1053 1 0 101 12 13 144 0 1 1878 1 2 79 1 0 96 11 11 138 chain 12215 chr3 198022430 + 35742362 35742503 L1PA6 6164 + 5999 6140 151362 141 chain 33515 chr3 198022430 + 35857150 35857596 L1PA8 5853 - 0 444 78382 90 4 3 19 2 1 60 2 1 70 2 0 47 1 0 123 0 4 26 chain 3420 chr3 198022430 + 35857596 35857632 MER5A1 166 - 89 125 216771 36 chain 543386 chr3 198022430 + 35860145 35866184 L1PA2 6032 - 0 6032 2283 255 1 2 1542 1 0 89 5 9 552 3 0 1158 2 0 151 0 1 592 0 1 1292 8 0 132 1 0 183 1 2 71 chain 32787 chr3 198022430 + 35869240 35869615 L1PA7 6471 + 6097 6470 79553 368 2 0 5 chain 10872 chr3 198022430 + 35903143 35903261 L1PA3long 6157 + 6037 6155 156692 118 chain 2998 chr3 198022430 + 35906463 35906496 MER51A 677 + 199 232 225076 33 chain 25103 chr3 198022430 + 35915902 35916255 LTR7 482 - 7 482 104268 180 5 6 25 8 40 60 6 95 69 chain 288986 chr3 198022430 + 35917513 35921156 HERVH-int 3825 - 0 3825 14085 225 0 2 48 0 2 168 50 260 39 9 11 971 8 13 115 0 1 190 0 1 93 0 5 196 1 0 15 1 0 13 0 2 24 9 0 201 16 1 110 0 1 339 1 0 68 21 0 14 1 0 11 2 0 30 1 0 7 21 0 14 0 31 24 2 1 9 2 1 37 5 0 532 chain 25367 chr3 198022430 + 35921165 35921517 LTR7 482 - 7 482 102844 178 0 31 41 0 1 72 9 98 21 9 11 22 chain 22197 chr3 198022430 + 35928190 35928527 THE1B 368 - 0 368 119366 113 0 40 13 1 0 4 22 0 25 2 1 108 5 20 44 chain 249239 chr3 198022430 + 35941875 35944634 L1PA3long 6157 - 5 2775 16295 75 0 2 505 0 8 1200 0 1 979 chain 36779 chr3 198022430 + 35999518 35999944 L1PA4 6152 - 9 431 73830 146 0 1 2 6 0 37 0 1 235 chain 61462 chr3 198022430 + 36063901 36064604 L1PA4 6152 - 9 709 52128 251 1 0 397 13 11 41 chain 5209 chr3 198022430 + 36065256 36065317 Tigger3c 601 + 43 104 192930 61 chain 162478 chr3 198022430 + 36085746 36087843 L1PA7 6471 - 14 1993 23003 144 1 0 77 135 0 533 0 4 67 9 13 139 0 1 172 1 0 352 1 0 175 0 10 37 0 1 254 chain 464252 chr3 198022430 + 36090428 36095586 L1PA3long 6157 - 245 5404 8249 604 0 4 2131 0 2 1517 1 0 695 4 0 206 chain 30006 chr3 198022430 + 36096738 36097116 THE1C 375 + 1 375 84786 128 3 0 221 1 0 25 chain 98138 chr3 198022430 + 36121380 36122631 L1PA8A 6298 - 8 1270 37241 117 5 6 594 22 25 49 4 10 72 5 8 213 2 0 168 chain 539647 chr3 198022430 + 36124236 36130377 L1PA4 6152 + 3 6151 2871 185 6 19 27 0 1 219 14 8 118 1 0 154 1 2 500 1 0 3445 5 0 105 1 3 6 2 0 509 0 4 730 0 1 112 chain 14935 chr3 198022430 + 36140697 36140871 L1PA3long 6157 - 0 171 141521 8 3 0 163 chain 57264 chr3 198022430 + 36140876 36141501 L1PA3long 6157 + 5361 5986 54359 625 chain 127407 chr3 198022430 + 36145675 36147069 L1PA2 6032 + 4637 6031 28717 619 1 0 455 0 1 319 chain 113198 chr3 198022430 + 36164129 36165484 L1PA7 6471 + 5098 6459 33318 347 0 1 4 1 0 171 1 0 79 1 4 78 0 3 132 5 6 536 chain 42940 chr3 198022430 + 36174974 36175532 MLT2A2 560 - 0 560 65491 356 4 9 7 3 0 188 chain 80153 chr3 198022430 + 36182570 36183586 LTR5A 1029 - 0 1029 43529 33 19 20 157 0 1 42 6 5 331 5 12 278 1 0 70 1 7 73 chain 19635 chr3 198022430 + 36188463 36188678 L1PA2 6032 + 5817 6032 128297 215 chain 118146 chr3 198022430 + 36209630 36210921 L1PA3long 6157 - 0 1292 31752 972 0 1 319 chain 4251 chr3 198022430 + 36221864 36221952 MLT1D 503 + 364 455 203858 14 17 0 8 1 21 48 chain 410620 chr3 198022430 + 36227935 36233334 L1PB1 5432 - 12 5355 9784 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 1 0 38 6 5 16 2 1 50 3 1 10 6 2 10 1 0 9 1 0 24 3 0 7 3 4 110 0 1 180 1 0 157 0 1 27 3 0 74 0 1 8 3 0 46 14 23 264 1 0 219 0 1 264 33 1 15 1 2 644 7 5 204 0 1 9 5 6 348 10 1 434 4 6 297 0 2 341 0 2 11 12 5 163 18 20 236 4 5 109 0 1 103 0 4 19 8 12 119 2 0 303 0 3 125 0 1 93 chain 137068 chr3 198022430 + 36267798 36269356 L1PA5 6144 + 4587 6139 26628 35 2 0 882 2 0 268 2 0 119 1 0 110 0 1 137 chain 59704 chr3 198022430 + 36279157 36279804 L1PA2 6032 - 1289 1936 52881 647 chain 120012 chr3 198022430 + 36279804 36281099 L1PA2 6032 + 4736 6031 31054 1295 chain 240165 chr3 198022430 + 36292219 36295636 L1PA10 4194 + 250 3670 16764 21 2 0 7 68 41 16 79 68 85 3 0 188 0 1 83 67 68 109 15 5 661 0 9 122 0 1 22 24 58 200 0 4 15 0 1 59 0 1 131 0 4 166 10 3 247 3 4 24 5 9 55 0 1 24 0 1 687 0 2 5 5 3 209 chain 10452 chr3 198022430 + 36328415 36328641 L1MA5A 2387 + 2107 2299 158481 48 2 0 32 1 0 24 14 11 10 28 0 33 7 8 22 1 0 4 chain 2693 chr3 198022430 + 36331885 36331914 MER106A 234 - 83 112 230312 29 chain 46639 chr3 198022430 + 36336145 36336715 L1PA7 6471 - 5 579 61506 158 1 0 75 0 5 336 chain 3682 chr3 198022430 + 36352331 36352421 MER67A 545 + 429 520 212202 21 34 35 35 chain 542699 chr3 198022430 + 36362465 36368585 L1PA4 6152 + 10 6146 2390 577 0 1 139 8 4 505 0 1 238 7 9 293 0 1 212 0 1 2125 0 2 459 0 4 572 0 5 142 1 5 78 2 1 762 chain 2748 chr3 198022430 + 36368776 36368818 MADE1 96 - 2 45 229507 22 2 3 18 chain 246494 chr3 198022430 + 36454410 36457246 L1P1 4361 - 1461 4357 16420 360 0 1 1401 0 6 640 0 1 133 0 21 132 0 31 170 chain 93746 chr3 198022430 + 36478253 36479279 L1PA3long 6157 + 5132 6157 38423 772 1 0 253 chain 3353 chr3 198022430 + 36483729 36483766 L1MA5A 2387 - 950 987 218003 37 chain 116068 chr3 198022430 + 36494654 36496043 LTR12C 1709 + 0 1709 32427 338 0 43 269 0 278 184 1 0 5 3 1 96 5 4 6 0 4 397 1 0 84 chain 79438 chr3 198022430 + 36505008 36505924 L1PA4 6152 - 0 913 43854 6 0 5 26 4 0 274 4 0 602 chain 28560 chr3 198022430 + 36507072 36507506 MLT2A1 477 - 0 477 90923 20 1 0 16 11 56 181 0 1 4 1 0 26 1 5 25 0 1 15 14 14 95 6 0 18 chain 191337 chr3 198022430 + 36507506 36510194 L1PB1 5432 - 1069 3701 19928 108 0 1 69 3 1 222 1 0 185 0 57 350 16 15 12 0 4 328 1 0 4 11 12 106 0 3 9 2 0 85 1 0 200 0 8 91 11 0 153 2 1 197 15 9 11 44 0 346 60 0 45 chain 28777 chr3 198022430 + 36512523 36512877 THE1A 353 - 0 353 89991 243 2 1 109 chain 122970 chr3 198022430 + 36512877 36514452 THE1A-int 1579 - 0 1579 30060 16 1 0 176 1 5 70 0 1 305 12 0 306 3 14 206 40 42 144 3 2 292 chain 29097 chr3 198022430 + 36514452 36514803 THE1A 353 - 0 351 88566 351 chain 286490 chr3 198022430 + 36547715 36551178 L1PA7 6471 - 1290 4789 14259 70 0 4 127 0 1 309 0 4 358 3 7 20 0 1 148 2 3 71 0 1 54 0 1 435 1 0 44 1 0 736 5 4 23 1 5 122 0 2 518 0 15 293 0 1 122 chain 108182 chr3 198022430 + 36551178 36552453 L1PA7 6471 + 5186 6464 34656 435 0 6 301 4 1 535 chain 96563 chr3 198022430 + 36576515 36577699 L1PA10 4194 - 146 1336 37676 185 0 1 159 0 2 168 4 6 220 0 1 448 chain 7780 chr3 198022430 + 36577700 36577816 L1PA10 4194 + 4051 4161 172419 31 3 0 34 3 0 14 0 1 19 1 0 11 chain 97011 chr3 198022430 + 36608850 36610022 L1PA7 6471 - 17 1197 37562 790 12 21 27 1 0 342 chain 96139 chr3 198022430 + 36610022 36611169 L1P2 5180 + 1525 2764 37730 8 0 9 607 2 85 530 chain 7859 chr3 198022430 + 36617410 36617545 MLT1A1 405 + 266 394 171947 51 5 6 9 1 0 36 8 1 25 chain 83255 chr3 198022430 + 36619607 36620677 MER11B 1079 - 0 1079 42231 11 1 0 294 2 4 175 21 12 60 0 3 184 3 20 57 3 0 259 chain 7568 chr3 198022430 + 36633289 36633379 MLT1A 405 - 29 119 173743 90 chain 11257 chr3 198022430 + 36652759 36652928 L1P4 1494 + 80 242 155200 8 2 0 4 3 0 32 2 1 20 1 0 97 chain 28067 chr3 198022430 + 36652928 36653236 L1PA3long 6157 + 5849 6157 92763 308 chain 62944 chr3 198022430 + 36654179 36654872 L1PA4 6152 + 5458 6151 51470 693 chain 298046 chr3 198022430 + 36662967 36666505 L1HS 6032 - 1 3521 13530 278 36 0 567 0 4 466 7 10 187 0 5 51 1 2 37 0 1 798 0 1 392 1 2 287 0 1 425 0 1 5 chain 138358 chr3 198022430 + 36675216 36677078 LTR12C 1709 + 0 1709 26423 678 266 72 47 0 40 275 1 0 5 3 1 106 0 4 42 0 1 287 1 0 151 chain 23761 chr3 198022430 + 36675897 36676157 LTR12C 1709 - 219 479 111705 260 chain 171741 chr3 198022430 + 36698215 36700805 L1PB1 5432 + 2856 5422 21852 184 21 22 203 0 1 216 24 23 224 3 4 201 0 3 25 0 1 23 0 1 260 11 10 53 1 0 223 0 1 12 0 1 77 22 19 63 9 9 88 1 9 94 4 5 187 5 4 13 3 0 23 9 6 12 47 41 23 51 49 11 1 0 16 4 1 14 9 0 10 19 15 10 2 0 24 1 0 20 2 1 13 1 0 18 chain 9289 chr3 198022430 + 36716729 36716870 LTR8 732 - 541 693 164112 8 0 1 19 0 6 31 11 15 72 chain 83608 chr3 198022430 + 36717701 36718616 L1PA3long 6157 + 5240 6157 42071 72 0 2 843 chain 25984 chr3 198022430 + 36764004 36764366 THE1B 368 + 0 368 100079 168 1 0 93 3 0 23 3 4 12 14 23 45 chain 120411 chr3 198022430 + 36764366 36765929 THE1B-int 1605 + 0 1599 30903 281 0 2 148 0 25 362 21 28 51 0 1 201 19 20 480 chain 26844 chr3 198022430 + 36765934 36766298 THE1B 368 + 0 368 96829 161 8 7 93 3 0 45 5 13 49 chain 24853 chr3 198022430 + 36801841 36802117 L1PA4 6152 + 5865 6141 105609 276 chain 220427 chr3 198022430 + 36839438 36841910 L1PA5 6144 - 4 2483 17853 189 0 4 1370 0 1 232 0 1 424 0 1 257 chain 21108 chr3 198022430 + 36849157 36849402 L1PA4 6152 - 0 246 123528 231 0 1 14 chain 13423 chr3 198022430 + 36852682 36852926 L1PB3 3668 + 3331 3556 146609 41 18 19 87 22 6 9 2 1 9 1 0 25 3 1 27 chain 19158 chr3 198022430 + 36900764 36901005 L1PA7 6471 - 1 245 129651 12 0 2 167 4 5 58 chain 15835 chr3 198022430 + 36922248 36922423 L1PA4 6152 - 16 191 138840 175 chain 11597 chr3 198022430 + 36929047 36929216 MER30 238 + 58 238 153906 5 0 1 39 14 24 111 chain 9839 chr3 198022430 + 36943515 36943712 MER30 238 - 8 238 161399 51 43 63 7 7 0 14 0 2 57 2 20 16 chain 6418 chr3 198022430 + 36971962 36972043 MLT1E2 623 + 542 623 181884 81 chain 33009 chr3 198022430 + 36974431 36974922 LTR10D 510 + 0 510 79200 70 3 4 17 14 19 76 5 12 34 13 15 15 2 0 5 2 4 75 0 3 85 0 1 75 chain 13251 chr3 198022430 + 36998859 36999015 L1PA5 6144 + 5988 6144 147283 156 chain 9538 chr3 198022430 + 37002321 37002628 MLT1A1 405 + 0 344 162899 26 0 1 9 126 137 11 9 10 11 10 35 26 1 0 78 chain 14429 chr3 198022430 + 37009509 37009682 L1PA5 6144 - 7 181 143116 146 1 2 26 chain 2856 chr3 198022430 + 37015438 37015468 MER74A 558 + 139 169 227756 30 chain 25527 chr3 198022430 + 37039291 37039587 AluSp 311 + 10 308 102106 267 1 3 28 chain 78503 chr3 198022430 + 37040349 37041230 L1PA4 6152 - 0 883 44270 6 4 0 149 0 1 524 0 1 189 0 4 9 chain 3544 chr3 198022430 + 37124016 37124092 L1MC1 2226 - 29 105 214643 14 1 0 29 6 5 14 1 0 6 0 3 5 chain 7421 chr3 198022430 + 37139770 37139854 L1PA5 6144 - 0 84 174647 84 chain 31293 chr3 198022430 + 37163411 37163781 L1PA5 6144 - 0 371 81999 162 11 12 197 chain 29037 chr3 198022430 + 37172000 37172554 MER44C 733 + 0 632 88824 6 1 0 12 4 19 113 108 156 35 7 10 63 2 3 7 0 2 7 10 12 129 0 8 50 chain 5696 chr3 198022430 + 37181817 37181890 U6 107 + 0 76 188142 47 0 3 26 chain 9528 chr3 198022430 + 37193398 37193539 L1PB2 3958 + 3646 3785 162939 35 1 0 31 0 2 41 3 1 19 1 0 10 chain 22744 chr3 198022430 + 37214401 37214700 AluY 311 + 0 295 116850 123 9 4 150 4 5 13 chain 6503 chr3 198022430 + 37238230 37238309 U13 108 + 0 79 181210 79 chain 13941 chr3 198022430 + 37246759 37247324 LTR7B 505 + 252 497 144784 36 1 0 40 19 25 29 324 0 57 16 15 43 chain 112640 chr3 198022430 + 37248165 37249578 HERVH-int 3825 + 2170 3825 33489 141 0 1 402 3 4 82 11 0 47 0 1 167 1 0 402 3 254 154 chain 21662 chr3 198022430 + 37251005 37251335 LTR7B 505 + 0 487 121537 105 0 10 31 0 6 18 14 82 26 1 75 88 14 13 33 chain 3467 chr3 198022430 + 37251867 37251987 MER63A 208 - 0 126 215863 37 66 72 17 chain 120265 chr3 198022430 + 37274312 37275759 LTR12C 1709 + 0 1709 30957 262 0 1 242 15 0 145 0 278 184 1 0 4 6 4 98 6 10 378 4 1 102 chain 25049 chr3 198022430 + 37278071 37278379 AluSc5 308 - 0 308 104550 308 chain 14326 chr3 198022430 + 37301546 37301741 MER30 238 - 0 205 143473 32 0 1 6 3 0 78 2 14 74 chain 13703 chr3 198022430 + 37304775 37304971 MER107 203 - 3 202 145592 24 17 20 155 chain 30183 chr3 198022430 + 37327625 37327943 AluYb8 318 - 0 318 84244 318 chain 23874 chr3 198022430 + 37333890 37334186 AluSc 308 + 0 291 111063 18 6 0 201 1 0 42 0 2 28 chain 8840 chr3 198022430 + 37380183 37380327 L1MB5 1630 - 97 239 166431 47 26 24 71 chain 22025 chr3 198022430 + 37387184 37387451 AluSg 306 + 27 294 120117 267 chain 24094 chr3 198022430 + 37393632 37394016 THE1C 375 - 0 367 109774 18 2 1 6 1 0 62 27 13 60 9 12 78 3 0 99 1 0 18 chain 27089 chr3 198022430 + 37403731 37404027 AluYa5 310 - 15 310 95976 172 4 0 110 0 3 10 chain 80841 chr3 198022430 + 37413223 37414147 L1PA5 6144 - 2 944 43250 145 6 19 141 0 1 541 0 4 91 chain 6797 chr3 198022430 + 37420321 37420469 LTR36 617 + 457 617 178975 19 44 45 15 2 0 52 0 13 16 chain 54711 chr3 198022430 + 37431710 37432637 L1PREC2 3366 - 318 1192 55892 26 75 59 11 3 0 30 3 1 14 12 7 12 75 53 29 1 0 54 2 0 87 11 7 6 0 1 179 0 1 297 chain 73432 chr3 198022430 + 37435236 37436056 L1PA5 6144 - 19 846 46822 129 0 7 691 chain 52048 chr3 198022430 + 37446886 37449621 L1MA3 4352 - 1628 4352 57596 142 1 0 65 5 0 147 0 4 53 1845 1835 52 2 0 5 2 4 79 26 25 8 2 0 16 1 3 106 0 2 5 0 1 9 7 0 7 1 0 33 0 1 17 9 19 18 0 3 28 1 0 15 13 7 15 chain 8524 chr3 198022430 + 37455713 37455933 L1MA4 2864 - 63 248 168164 35 3 1 13 78 51 7 3 0 19 3 0 59 chain 5030 chr3 198022430 + 37465543 37465603 MLT1H2 457 + 397 457 194834 60 chain 509952 chr3 198022430 + 37466848 37473007 L1PA6 6164 - 2 6164 6170 8 3 0 328 1 0 433 0 2 22 1 2 500 0 1 1624 0 4 53 1 0 629 2 1 148 5 0 461 1 7 287 0 1 194 0 2 9 2 0 363 5 8 253 0 17 57 5 4 157 21 20 118 76 58 86 1 0 305 chain 10016 chr3 198022430 + 37473751 37473861 L1PA4 6152 - 0 110 160505 110 chain 9110 chr3 198022430 + 37485932 37486054 MLT1B 390 + 266 390 165013 13 1 3 108 chain 39077 chr3 198022430 + 37531284 37531852 LTR10A 586 - 0 569 70637 253 11 12 45 0 39 9 10 0 29 34 6 82 2 1 93 chain 18656 chr3 198022430 + 37554941 37555152 L1PA4 6152 - 13 224 131062 211 chain 66252 chr3 198022430 + 37601445 37602210 L1PA6 6164 - 3 765 49980 7 3 0 755 chain 21933 chr3 198022430 + 37608553 37608911 THE1B 368 - 5 368 120487 44 8 9 5 2 0 53 20 28 32 2 0 23 1 0 99 19 20 50 chain 116738 chr3 198022430 + 37608911 37610429 THE1B-int 1605 - 0 1560 32214 9 0 1 12 5 0 6 0 5 225 1 0 5 8 9 363 12 0 105 0 1 5 0 24 362 16 41 160 0 2 147 0 1 77 chain 3422 chr3 198022430 + 37614664 37614703 U7 62 - 22 61 216719 39 chain 546622 chr3 198022430 + 37654460 37660593 L1PA4 6152 - 0 6144 1867 6 0 5 2888 0 3 67 1 0 652 0 1 349 0 2 942 0 1 1228 chain 177143 chr3 198022430 + 37677123 37679084 L1PA4 6152 - 1 1961 21236 259 1 0 1701 chain 2978 chr3 198022430 + 37695580 37695635 MADE2 80 + 0 69 225482 34 9 23 12 chain 430710 chr3 198022430 + 37696186 37701365 L1PA7 6471 - 4 5201 9297 9 3 0 148 1 2 345 2 0 159 1 0 188 0 2 472 0 1 367 0 1 165 0 2 289 0 1 115 2 1 227 0 1 381 0 3 38 1 5 16 5 0 20 10 6 403 0 4 200 0 1 5 0 4 4 1 0 145 0 1 32 4 3 58 6 7 401 4 8 61 1 6 366 1 0 485 0 1 38 chain 4282 chr3 198022430 + 37708050 37708273 MLT1H 522 - 235 471 203451 28 57 56 15 87 101 36 chain 101911 chr3 198022430 + 37738844 37740030 L1PA6 6164 - 15 1201 36283 130 3 4 11 1 0 309 0 1 379 1 0 352 chain 4863 chr3 198022430 + 37775213 37775275 MLT1A 405 + 294 363 196650 48 0 7 14 chain 29798 chr3 198022430 + 37799532 37799844 AluYb8 318 + 0 312 85440 312 chain 3895 chr3 198022430 + 37811628 37811672 MER94 134 + 89 133 208933 44 chain 28092 chr3 198022430 + 37821869 37822330 L1PB4 2604 - 74 522 92673 28 17 21 98 22 0 114 10 11 88 1 0 4 4 9 75 chain 458291 chr3 198022430 + 37880307 37885843 L1PA6 6164 + 0 6161 8462 136 0 1 255 16 15 42 19 0 88 1 2 248 0 17 295 22 30 548 0 1 143 0 572 163 4 10 631 2 0 68 0 5 30 2 0 398 3 0 202 2 1 783 12 53 19 0 3 549 0 1 231 1 0 465 5 0 6 1 6 137 2 0 7 chain 5480 chr3 198022430 + 37892518 37892585 MER74A 558 - 10 77 190222 67 chain 23545 chr3 198022430 + 37915939 37916223 AluSc 308 + 0 283 112877 19 2 1 263 chain 4040 chr3 198022430 + 37931060 37931113 HAL1 992 + 162 222 206780 9 0 7 44 chain 5568 chr3 198022430 + 37968564 37968630 Tigger4b 360 + 46 112 189403 66 chain 30032 chr3 198022430 + 37990295 37990610 AluYb8 318 - 3 318 84713 315 chain 13531 chr3 198022430 + 38015438 38015648 MER30 238 + 0 238 146240 12 7 0 6 12 19 71 2 30 100 chain 7216 chr3 198022430 + 38056067 38056157 HY3 101 + 9 99 175957 90 chain 11699 chr3 198022430 + 38087464 38087698 MER65A 464 - 0 254 153481 14 1 5 29 23 38 107 39 40 21 chain 127320 chr3 198022430 + 38094247 38095704 SVA_C 1631 + 9 1630 28736 48 3 7 17 14 1 635 0 40 124 0 137 596 4 0 16 chain 5501 chr3 198022430 + 38098151 38098214 MER41B 635 + 481 544 190037 63 chain 119527 chr3 198022430 + 38105502 38106877 SVA_B 1603 - 0 1603 31207 67 0 1 525 1 81 52 0 157 670 12 0 21 5 7 22 chain 33162 chr3 198022430 + 38111986 38112425 LTR7 482 - 0 482 78964 49 13 14 52 1 2 73 0 31 40 0 10 211 chain 305513 chr3 198022430 + 38113472 38124665 HERVH-int 3825 - 0 3743 13187 779 5774 0 748 0 1 581 4 31 231 0 2 428 0 3 242 1 0 24 1698 5 6 1 0 14 2 1 5 0 1 7 0 61 19 0 17 15 28 0 24 1 0 10 1 0 38 62 0 450 chain 219589 chr3 198022430 + 38114283 38117778 HERVH-int 3825 - 810 3743 17913 21 185 20 233 0 1 350 9 17 730 1 0 40 4 3 100 8 7 22 330 0 6 10 0 33 10 1 202 15 0 32 0 2 120 1 0 5 0 2 289 1 0 77 1 0 46 22 0 18 21 0 7 3 0 13 1 14 24 1 0 10 1 0 36 5 0 452 chain 37633 chr3 198022430 + 38117780 38118230 LTR7 482 - 0 482 72644 115 1 2 70 1 32 263 chain 44618 chr3 198022430 + 38119460 38119992 HERVH-int 3825 - 0 744 63461 225 0 2 268 0 210 39 chain 132253 chr3 198022430 + 38122303 38123940 SVA_F 1814 - 0 1479 27573 22 0 1 577 173 1 74 2 1 132 13 13 27 3 18 68 1 0 545 chain 14164 chr3 198022430 + 38122902 38123075 SVA_F 1814 - 649 826 85761 172 0 4 1 chain 35808 chr3 198022430 + 38124667 38125219 LTR7 482 - 0 482 75119 115 1 2 70 1 32 80 102 0 183 chain 2871 chr3 198022430 + 38132583 38132645 L1MA8 2339 + 1192 1256 227514 19 14 17 20 1 0 8 chain 3810 chr3 198022430 + 38164993 38165040 Ricksha_b 1102 - 32 79 210232 47 chain 4211 chr3 198022430 + 38177262 38177314 LTR5B 1012 - 537 589 204409 52 chain 12934 chr3 198022430 + 38177796 38177966 LTR5B 1012 + 803 1012 148484 63 0 28 12 0 9 86 0 2 9 chain 84457 chr3 198022430 + 38244034 38244992 LTR13A 966 + 0 966 41739 76 0 4 242 0 1 412 0 4 32 1 0 195 chain 25571 chr3 198022430 + 38306846 38307160 L1PA8 5853 - 0 307 101869 93 1 0 18 1 0 54 1 0 9 1 0 71 2 0 42 1 0 20 chain 49315 chr3 198022430 + 38311209 38311761 L1PA3long 6157 - 0 551 59510 138 1 0 413 chain 63386 chr3 198022430 + 38330917 38331669 LTR17 781 - 8 781 51289 23 0 22 401 1 0 327 chain 379342 chr3 198022430 + 38331983 38336318 HERV17-int 4347 - 0 4335 10777 1200 1 0 546 2 0 1130 2 3 430 0 2 546 0 1 66 0 4 280 1 0 27 2 0 33 1 0 52 1 0 15 chain 65449 chr3 198022430 + 38338042 38338816 LTR17 781 - 8 781 50357 446 1 0 327 chain 8592 chr3 198022430 + 38345265 38345370 U6 107 - 2 107 167765 105 chain 29080 chr3 198022430 + 38362002 38362377 L1PA8 5853 - 0 368 88641 93 1 0 19 2 1 47 1 0 14 1 0 71 2 0 46 1 0 77 chain 9036 chr3 198022430 + 38369783 38369894 LTR8A 794 - 664 775 165411 111 chain 3685 chr3 198022430 + 38371245 38371374 MER3 215 - 11 151 212151 32 75 86 22 chain 20949 chr3 198022430 + 38371966 38372472 L1MB8 1703 + 1202 1649 124112 22 13 15 107 3 4 70 86 85 81 78 26 14 6 0 4 3 0 19 chain 174116 chr3 198022430 + 38382875 38384770 L1PA3long 6157 - 15 1910 21580 1895 chain 44601 chr3 198022430 + 38384770 38385257 L1PA3long 6157 + 3751 4247 63200 413 0 9 74 chain 52238 chr3 198022430 + 38385645 38386348 LTR8 732 - 15 732 57470 174 19 16 309 5 6 50 0 6 117 0 9 14 0 1 15 chain 24061 chr3 198022430 + 38386715 38387005 AluSp 311 + 7 297 109976 290 chain 77008 chr3 198022430 + 38422583 38423629 MER11C 1089 + 0 1063 44961 246 0 9 16 0 2 44 0 4 65 1 0 147 70 69 88 6 9 38 0 1 125 0 1 56 1 0 143 chain 60654 chr3 198022430 + 38430442 38431108 SVA_D 2077 - 6 670 52492 595 5 1 25 0 1 4 0 1 37 chain 22721 chr3 198022430 + 38433787 38434078 AluSq2 311 - 8 302 116980 92 0 1 56 1 4 6 3 0 10 0 2 123 chain 556496 chr3 198022430 + 38446891 38453020 L1PA3long 6157 + 6 6146 671 81 1 0 878 0 1 201 0 3 2001 1 0 1177 6 10 952 0 4 440 1 2 390 chain 20066 chr3 198022430 + 38457295 38457615 THE1D 372 - 40 354 126932 121 55 45 31 1 5 112 chain 38282 chr3 198022430 + 38462259 38462745 MER9B 498 + 8 498 71736 145 2 1 245 0 1 4 0 1 32 0 2 5 0 1 53 chain 258342 chr3 198022430 + 38463660 38467262 HERVK9-int 4720 + 351 3624 15790 554 10 7 301 14 14 7 316 0 12 0 3 780 14 14 238 0 1 252 8 9 759 43 26 6 0 2 288 chain 38965 chr3 198022430 + 38468262 38468747 MER9B 498 + 12 498 70784 141 2 1 290 0 1 24 0 1 28 chain 183570 chr3 198022430 + 38471056 38473180 L1PA6 6164 - 2 2138 20620 72 2 6 331 0 1 308 0 1 231 0 1 651 3 4 136 0 4 390 chain 12931 chr3 198022430 + 38473595 38473776 THE1C-int 1605 - 6 190 148499 21 0 1 58 6 5 64 0 3 32 chain 16244 chr3 198022430 + 38475416 38475740 THE1C 375 - 33 375 137636 92 60 71 64 44 45 17 0 6 47 chain 33665 chr3 198022430 + 38480051 38480596 LTR12 884 - 11 884 78149 49 13 249 199 2 0 34 2 3 26 1 0 54 1 42 12 18 1 20 1 0 11 4 10 17 4 69 77 chain 399845 chr3 198022430 + 38482577 38487401 HERV9-int 5642 - 835 5642 10100 47 1 5 434 2 0 6 0 2 948 0 3 200 18 1 136 0 1 1233 1 4 310 1 0 366 24 6 259 2 0 46 6 5 79 6 0 38 0 15 43 25 23 25 1 5 567 chain 27197 chr3 198022430 + 38492440 38492853 LOR1b 457 - 0 399 95607 254 16 25 10 27 4 22 2 0 46 0 2 36 chain 3749 chr3 198022430 + 38499773 38499815 Charlie4z 170 - 20 62 211186 42 chain 8235 chr3 198022430 + 38546972 38547072 HY3 101 - 1 101 169750 100 chain 24731 chr3 198022430 + 38549353 38549651 AluSx4 309 + 11 309 106271 46 0 1 222 1 0 29 chain 24387 chr3 198022430 + 38563988 38564284 AluSp 311 - 5 301 108151 296 chain 27523 chr3 198022430 + 38573177 38573481 L1PA5 6144 - 5 308 94590 254 1 0 49 chain 5994 chr3 198022430 + 38692299 38692368 LTR12F 595 + 402 471 185300 69 chain 47086 chr3 198022430 + 38707594 38709194 L1MA4 2864 + 1051 2693 61134 22 99 98 24 19 30 38 1 0 73 5 6 25 558 656 95 1 0 71 7 6 15 42 38 60 144 89 100 3 2 138 1 0 33 4 1 22 chain 129684 chr3 198022430 + 38733567 38735016 L1PA4 6152 - 0 1452 28160 5 3 0 108 0 1 146 2 0 585 0 6 99 1 2 500 chain 32708 chr3 198022430 + 38735016 38735378 L1PA4 6152 + 4333 4695 79382 362 chain 10981 chr3 198022430 + 38735562 38735698 L1PA6 6164 + 6028 6161 156266 126 3 0 7 chain 25660 chr3 198022430 + 38757737 38758097 THE1B 368 + 0 368 101448 44 0 15 12 5 0 86 16 15 121 1 0 75 chain 29139 chr3 198022430 + 38760873 38761183 AluYa5 310 - 0 310 88366 310 chain 28685 chr3 198022430 + 38778454 38778760 AluYk11 308 - 2 308 90387 306 chain 96174 chr3 198022430 + 38822020 38823262 HSMAR1 1287 + 0 1245 37777 122 0 3 137 0 2 282 14 12 187 0 1 175 14 17 9 4 0 114 1 0 4 2 3 177 chain 203368 chr3 198022430 + 38825756 38828126 L1PA7 6471 + 4091 6465 18971 46 0 1 839 0 1 642 0 4 834 2 0 7 chain 32220 chr3 198022430 + 38829173 38829538 L1PA7 6471 - 10 380 80485 167 0 5 198 chain 111165 chr3 198022430 + 38844037 38845287 L1PA5 6144 + 4880 6131 33890 1091 1 2 158 chain 4382 chr3 198022430 + 38874053 38874109 MER5A1 166 + 24 91 202174 25 0 7 13 0 4 18 chain 68012 chr3 198022430 + 38874634 38875405 L1PA5 6144 + 5360 6132 49244 450 0 1 80 1 0 110 0 1 130 chain 269616 chr3 198022430 + 38899420 38904019 L1PB2 3958 + 25 3838 15201 27 103 67 18 3 1 25 19 9 6 1 0 49 8 5 34 23 31 70 0 1 231 0 7 195 10 0 371 17 11 41 0 1 31 1 0 48 0 4 41 0 3 82 7 11 5 2 0 140 1 0 79 734 9 85 0 1 56 0 1 213 0 1 165 6 5 273 1 0 446 1 0 30 0 2 125 0 2 224 2 0 56 50 48 28 2 0 13 5 0 86 1 0 8 2 1 70 1 0 16 0 1 4 1 0 44 1 0 69 5 0 24 6 5 58 chain 115021 chr3 198022430 + 38917123 38919640 L1PB1 5432 + 3738 5417 32784 736 0 3 53 1 2 100 12 8 151 3 11 212 0 2 87 1 2 9 827 0 24 27 21 9 2 0 52 97 88 18 7 6 12 7 5 6 0 1 14 1 0 22 1 0 12 1 0 13 chain 15649 chr3 198022430 + 38928916 38929087 L1PA4 6152 + 5980 6151 139436 171 chain 2764 chr3 198022430 + 38932603 38932896 L1M4b 1526 + 992 1255 229256 20 0 18 8 239 191 26 chain 182233 chr3 198022430 + 38955131 38957817 L1PREC2 3366 - 318 3149 20764 38 6 4 35 22 8 10 2 1 20 0 1 9 2 0 16 4 1 5 2 0 12 31 24 10 3 0 4 1 0 43 9 8 47 2 0 35 2 0 6 3 4 196 0 1 31 16 17 38 6 9 184 0 1 63 0 1 153 1 2 59 0 8 182 0 3 109 0 3 167 1 21 108 4 139 26 0 11 33 16 20 40 1 2 612 6 4 53 8 6 39 4 3 71 2 1 33 3 1 12 1 0 13 5 4 11 chain 4400 chr3 198022430 + 38959316 38959389 L1PB1 5432 + 5354 5423 201928 16 1 0 22 1 0 11 2 1 14 1 0 5 chain 13246 chr3 198022430 + 38960416 38960585 Tigger3a 397 - 71 256 147302 17 0 2 140 0 14 12 chain 17140 chr3 198022430 + 38969762 38970027 L1PA8 5853 + 5591 5853 135204 17 2 0 13 0 1 56 2 1 61 2 1 17 16 16 79 chain 560800 chr3 198022430 + 38973727 38979881 L1PA3long 6157 + 4 6157 320 2240 3 0 707 0 2 539 0 7 96 0 1 703 1 0 1250 8 1 607 chain 3765 chr3 198022430 + 38985247 38985453 L1MA4 2864 + 2638 2804 210877 17 19 16 12 104 71 6 2 0 6 2 0 38 chain 108199 chr3 198022430 + 38992460 38993717 LTR12C 1709 + 0 1709 34646 297 0 1 503 1 317 106 0 4 274 1 132 75 chain 4443 chr3 198022430 + 38997401 38997452 L1PA8 5853 + 5778 5829 201413 51 chain 10339 chr3 198022430 + 39005068 39005358 L1PB1 5432 + 5158 5424 158947 9 2 0 18 0 1 34 2 1 11 6 5 7 0 1 36 95 77 12 1 0 21 1 0 13 1 0 16 1 0 4 chain 53927 chr3 198022430 + 39039959 39040553 L1PA4 6152 + 5551 6146 56416 78 0 1 516 chain 4749 chr3 198022430 + 39044099 39044200 MLT1H 522 + 26 149 197928 12 2 0 37 26 50 24 chain 47169 chr3 198022430 + 39045455 39046224 L1PA14 3548 - 83 819 61075 9 2 0 42 1 0 16 9 7 13 4 2 33 5 1 10 1 0 111 1 0 62 55 48 106 2 0 7 5 3 36 8 6 11 6 4 24 1 0 124 4 0 61 chain 35988 chr3 198022430 + 39046349 39046823 LTR2B 499 - 0 490 74912 182 1 0 10 0 1 173 3 22 48 2 0 49 1 0 5 chain 39235 chr3 198022430 + 39065934 39066478 MER39B 650 + 0 589 70406 66 11 52 123 0 1 19 1 0 131 7 11 131 0 2 8 3 1 44 chain 8513 chr3 198022430 + 39066668 39066774 MER39 703 - 557 665 168228 27 0 3 17 1 0 61 chain 30869 chr3 198022430 + 39084484 39085030 L1MA2 4263 + 3588 4114 82737 74 1 0 134 2 0 5 0 2 6 46 45 92 31 29 83 39 24 22 1 0 10 chain 27685 chr3 198022430 + 39087833 39088217 L1MA5 2750 + 1264 1653 94097 30 4 0 7 0 2 13 0 1 8 5 9 191 0 4 14 2 0 110 chain 5937 chr3 198022430 + 39092158 39092314 MER33 330 - 38 226 185812 26 51 84 23 2 1 33 1 0 8 0 1 12 chain 15798 chr3 198022430 + 39094332 39094514 L1PA6 6164 + 5975 6156 138958 40 1 0 141 chain 98333 chr3 198022430 + 39102593 39103768 L1PA6 6164 - 2 1172 37214 6 2 0 768 0 4 61 26 20 273 1 0 38 chain 38531 chr3 198022430 + 39112198 39112635 L1PA3long 6157 - 13 460 71397 124 0 11 12 1 0 300 chain 27784 chr3 198022430 + 39120241 39120538 AluYa5 310 + 0 299 93755 18 0 2 279 chain 5637 chr3 198022430 + 39207412 39207477 MER41A 554 + 403 468 188691 65 chain 8575 chr3 198022430 + 39223226 39223346 MER85 139 + 7 139 167876 48 3 5 30 1 11 38 chain 52119 chr3 198022430 + 39264729 39265393 L1PA8 5853 + 5196 5853 57549 368 1 0 44 16 14 71 8 6 41 2 1 19 2 1 92 chain 134900 chr3 198022430 + 39268579 39270082 SVA_D 2077 + 58 2077 27031 18 5 8 292 0 4 298 2 3 151 1 0 85 0 489 515 0 20 136 chain 3649 chr3 198022430 + 39270723 39270802 L1MD1 2063 - 680 760 212805 29 25 26 25 chain 29389 chr3 198022430 + 39327859 39328169 AluYb8 318 + 0 309 87127 123 1 0 186 chain 13698 chr3 198022430 + 39331218 39331467 MLT1B 390 + 117 368 145605 10 19 0 7 1 0 37 34 54 6 0 1 89 0 1 46 chain 325182 chr3 198022430 + 39345721 39349878 L1P3 4156 + 0 4136 12382 243 59 58 19 11 10 273 12 10 108 1 6 477 2 3 146 1 0 75 0 1 526 0 1 517 8 9 35 34 8 9 0 26 77 24 0 249 0 4 203 1 5 308 0 1 74 15 13 25 6 1 587 2 0 6 1 0 23 chain 115395 chr3 198022430 + 39351845 39353134 L1PA5 6144 - 1671 2960 32645 1289 chain 145439 chr3 198022430 + 39353135 39354779 L1PA5 6144 + 4488 6130 25267 806 2 0 836 chain 6792 chr3 198022430 + 39368826 39369196 MLT1D 503 + 91 503 179010 52 265 307 53 chain 31000 chr3 198022430 + 39378342 39378724 MLT2A1 477 + 0 383 82512 157 0 1 11 4 1 11 0 1 22 0 1 72 0 1 105 chain 9501 chr3 198022430 + 39378788 39378905 Tigger4b 360 + 182 299 163074 117 chain 20684 chr3 198022430 + 39388410 39388686 LTR8 732 + 0 285 125022 19 0 1 12 1 10 114 7 6 123 chain 2365 chr3 198022430 + 39394155 39394256 LTR15 485 + 0 101 71519 101 chain 65347 chr3 198022430 + 39394269 39395074 L1PA4 6152 + 5294 6105 50400 7 0 1 74 1 3 345 0 1 172 0 1 24 0 1 55 33 33 94 chain 16016 chr3 198022430 + 39395113 39395797 LTR15 485 + 103 477 71519 339 310 0 35 chain 13580 chr3 198022430 + 39399463 39402303 L1MA4 2864 + 2034 2439 146052 60 3 2 22 1 0 31 2580 151 6 1 0 28 4 1 104 chain 201292 chr3 198022430 + 39404115 39407091 L1PA10 4194 + 241 3211 19115 9 1 0 20 3 1 13 256 206 34 0 3 84 21 22 185 0 1 4 1 0 37 17 18 731 4 0 43 1 3 155 0 3 114 10 5 158 0 5 61 0 1 33 1 4 28 0 4 76 0 6 126 0 14 175 1 0 217 7 21 350 chain 7056 chr3 198022430 + 39407104 39407300 L1PA11 4918 + 4396 4567 177061 10 4 0 8 4 1 57 8 6 10 1 0 19 53 39 8 1 0 13 chain 541595 chr3 198022430 + 39408135 39414254 L1PA4 6152 - 1 6149 2577 792 0 3 53 1 3 26 1 2 1313 0 2 346 0 1 749 8 0 814 0 34 1437 1 0 114 12 6 405 0 1 47 chain 12229 chr3 198022430 + 39420845 39420998 MLT2C1 407 - 246 400 151301 110 0 1 43 chain 17306 chr3 198022430 + 39436510 39436730 MER30 238 - 4 238 134774 106 7 21 107 chain 78118 chr3 198022430 + 39458724 39459717 LTR13 1007 + 0 1007 44451 381 4 5 100 4 1 6 0 16 38 6 0 136 0 2 14 2 0 113 0 1 122 0 1 20 19 23 28 chain 83164 chr3 198022430 + 39459789 39460763 LTR5_Hs 974 - 0 974 42266 104 2 0 36 5 12 522 7 0 79 0 1 165 0 1 54 chain 5188 chr3 198022430 + 39471480 39471541 L1PA5 6144 - 14 75 193164 61 chain 3803 chr3 198022430 + 39479557 39479614 MLT2D 439 - 82 147 210352 26 6 14 25 chain 7622 chr3 198022430 + 39500352 39500443 LTR12D 1347 - 669 760 173397 91 chain 25680 chr3 198022430 + 39500615 39500935 MER48 407 + 0 342 101370 14 0 1 138 0 20 94 0 1 74 chain 20543 chr3 198022430 + 39586241 39586587 THE1B 368 + 2 368 125494 106 8 9 59 0 2 6 38 56 66 15 14 48 chain 534985 chr3 198022430 + 39592401 39598846 L1PA7 6471 + 3 6465 3593 459 0 12 570 1 0 220 1 0 495 2 1 316 0 1 58 0 1 503 0 2 455 0 4 584 2 3 26 0 2 71 0 1 441 2 1 37 2 0 66 2 1 30 0 1 196 0 1 13 1 0 4 0 1 762 1 0 225 0 1 4 1 0 50 1 0 844 chain 23601 chr3 198022430 + 39618948 39619270 LTR9B 643 - 83 421 112580 29 0 14 78 18 19 83 4 5 110 chain 30227 chr3 198022430 + 39619322 39619732 LTR7 482 - 0 482 84113 192 0 1 24 9 41 87 0 1 21 8 46 69 chain 283388 chr3 198022430 + 39620987 39624697 HERVH-int 3825 - 0 3825 14442 225 0 2 260 8 218 31 14 19 94 2 2 197 13 13 14 12 13 726 1 5 286 8 35 462 16 1 443 1 0 49 2 1 8 20 0 24 2 1 10 44 0 30 1 0 25 3 0 12 24 0 11 32 5 14 4 0 9 1 0 9 2 1 24 0 1 4 1 0 6 1 0 202 1 0 106 4 15 212 chain 2790 chr3 198022430 + 39623917 39623959 HERVH-int 3825 - 3180 3218 225268 14 3 0 13 1 0 11 chain 27367 chr3 198022430 + 39624699 39625109 LTR7 482 - 0 482 95058 187 5 6 25 8 40 87 0 1 21 35 73 42 chain 66909 chr3 198022430 + 39625843 39626573 L1PA2 6032 - 1 732 49679 16 0 1 714 chain 124954 chr3 198022430 + 39626573 39627919 L1PA2 6032 + 3962 5309 29409 900 0 1 446 chain 26485 chr3 198022430 + 39627993 39628363 LTR7B 505 - 14 505 98097 37 14 13 6 0 1 82 0 41 55 1 0 6 9 79 56 0 10 11 0 1 93 chain 10738 chr3 198022430 + 39628977 39629108 MER41A 554 - 0 131 157250 131 chain 457965 chr3 198022430 + 39656491 39661877 L1PA6 6164 - 2 6150 8472 8 3 0 832 0 4 325 0 1 45 0 1 1674 0 1 48 1 0 33 0 1 597 6 10 256 0 1 248 5 6 274 0 2 60 8 7 114 1 11 552 0 4 113 0 2 107 0 735 76 chain 15898 chr3 198022430 + 39688329 39688501 AluYb9 318 + 146 318 138665 172 chain 99944 chr3 198022430 + 39692376 39693498 SVA_C 1631 - 0 1631 36794 533 0 489 557 2 0 11 3 25 16 chain 36534 chr3 198022430 + 39695784 39696299 L1PBa1 4058 - 3536 4045 74192 90 3 1 149 1 0 88 7 8 131 1 0 5 21 18 19 chain 110227 chr3 198022430 + 39696811 39698146 SVA_B 1603 + 44 1603 34150 22 0 5 282 3 18 145 9 46 37 0 117 62 8 5 39 1 4 66 0 43 12 0 1 226 0 2 27 1 4 41 0 3 346 2 0 6 chain 92191 chr3 198022430 + 39699868 39700928 HERV17-int 4347 + 3296 4347 38903 44 7 0 422 2 0 585 chain 26703 chr3 198022430 + 39701242 39701565 LTR17 781 + 0 326 97311 116 0 13 170 10 0 27 chain 7937 chr3 198022430 + 39704795 39704898 L1PA4 6152 + 5815 6143 171407 12 0 225 91 chain 24175 chr3 198022430 + 39716967 39717383 L1PB2 3958 - 120 507 109346 52 13 12 21 12 10 61 2 1 22 0 1 41 1 0 54 14 10 71 26 5 26 chain 200995 chr3 198022430 + 39717423 39719632 L1PA3long 6157 - 7 2216 19143 2209 chain 26299 chr3 198022430 + 39738862 39739337 LTR1 825 + 286 824 98835 48 8 9 12 29 65 144 15 16 37 0 1 45 1 4 53 29 49 11 15 16 28 chain 130759 chr3 198022430 + 39754624 39756171 LTR12C 1709 + 0 1709 27915 309 0 1 4 1 0 81 0 1 303 0 159 253 1 0 5 3 1 39 0 1 67 0 4 481 chain 39952 chr3 198022430 + 39771472 39771932 L1PA5 6144 - 5 466 69393 141 3 4 316 chain 25558 chr3 198022430 + 39771932 39772216 L1PA5 6144 + 5386 5670 101943 284 chain 6701 chr3 198022430 + 39773644 39773717 L1PA3long 6157 + 6084 6157 179683 73 chain 416286 chr3 198022430 + 39779498 39784627 L1PA7 6471 - 8 5178 9629 4 0 1 67 1 0 253 0 2 232 3 15 222 0 2 26 10 14 124 0 14 507 0 1 613 2 1 128 0 1 325 0 1 81 17 9 237 0 5 135 0 1 78 1 2 82 0 1 38 0 1 536 2 1 72 12 0 31 0 1 149 1 0 189 1 0 78 0 1 18 0 1 25 0 1 129 1 13 236 1 0 189 9 10 105 0 1 88 14 16 57 chain 13244 chr3 198022430 + 39796802 39796965 THE1D 372 - 1 164 147309 163 chain 22402 chr3 198022430 + 39809200 39809538 MSTA 426 - 30 426 118472 61 3 39 52 1 0 6 3 0 32 4 0 47 0 6 16 15 39 98 chain 3307 chr3 198022430 + 39820065 39820108 LTR12C 1709 - 549 591 218838 11 1 0 31 chain 29886 chr3 198022430 + 39840751 39841226 L1PA15 4387 - 21 476 85144 10 1 0 27 13 8 5 2 0 42 10 7 50 1 0 11 4 0 21 1 0 55 1 0 25 6 5 167 1 0 22 chain 42556 chr3 198022430 + 39843996 39844560 LTR12_ 688 + 0 688 65953 142 1 2 104 3 1 17 15 30 114 0 102 40 0 8 128 chain 14875 chr3 198022430 + 39863857 39864059 MER30 238 + 20 230 141699 50 9 0 39 4 0 10 0 21 90 chain 43144 chr3 198022430 + 39869990 39870714 L1PB1 5432 - 8 701 65237 4 1 0 16 1 0 13 1 0 6 0 1 14 1 0 24 2 0 14 8 5 15 21 0 2 0 9 16 5 4 44 7 6 10 2 1 53 2 0 7 18 13 9 1 0 24 1 0 9 1 2 372 chain 508564 chr3 198022430 + 39877089 39884410 L1PA7 6471 - 4 6471 6272 656 0 1 279 623 0 155 8 8 696 0 4 73 0 4 881 3 1 54 0 20 82 0 4 17 0 2 44 3 2 82 303 0 82 9 16 65 0 20 56 13 1 59 21 25 353 0 1 203 0 2 83 0 1 14 5 0 50 0 12 221 0 1 226 0 1 133 1 5 15 1 2 75 14 21 102 5 1 103 1 2 169 11 10 164 5 6 386 20 18 289 1 2 18 28 28 189 6 5 4 0 1 162 chain 37037 chr3 198022430 + 39878113 39878646 LTR22 571 - 49 570 73473 43 56 45 12 1 0 118 1 0 21 0 1 176 0 1 27 1 0 77 chain 15493 chr3 198022430 + 39901366 39901648 L1MA9 1812 + 35 316 139918 34 6 4 88 46 56 67 9 0 32 chain 10477 chr3 198022430 + 39907969 39908091 AluSp 311 - 20 142 158354 122 chain 555941 chr3 198022430 + 39913832 39919977 L1PA3long 6157 - 2 6147 731 1857 1 0 988 2 3 3297 chain 11268 chr3 198022430 + 39921565 39921705 L1PA4 6152 - 16 149 155163 126 7 0 7 chain 65368 chr3 198022430 + 39926802 39927543 L1HS 6032 - 4320 5061 50392 741 chain 328580 chr3 198022430 + 39927543 39931180 L1PA3long 6157 + 1856 6157 12253 1400 0 663 1339 0 1 898 chain 4733 chr3 198022430 + 39955941 39956471 PRIMAX-int 1435 + 787 1212 198132 21 33 34 37 409 303 30 chain 6572 chr3 198022430 + 39984156 39984454 L1MA4 2864 - 55 308 180679 42 2 0 28 192 149 34 chain 410366 chr3 198022430 + 39995056 39999994 L1P2 5180 + 2 4970 9789 136 8 13 96 1 0 33 4 16 202 10 9 8 1 0 15 0 1 50 2 1 156 7 3 46 1 0 6 2 1 33 2 0 100 0 25 460 0 5 7 5 0 22 6 5 231 2 0 2006 0 1 496 0 1 4 1 0 450 1 2 328 chain 101565 chr3 198022430 + 40000000 40001176 L1PA5 6144 + 4963 6144 36378 330 1 5 34 1 0 307 0 4 488 4 2 11 chain 124337 chr3 198022430 + 40009496 40011591 L1PA14 3548 - 70 1895 29586 13 1 0 7 6 4 40 1 0 13 7 8 10 12 10 31 5 1 9 1 0 49 252 0 62 1 0 84 9 6 13 14 10 15 25 27 61 8 4 48 2 0 11 7 4 20 1 0 230 1 0 131 27 28 39 1 3 585 0 3 142 9 8 45 0 4 47 chain 349630 chr3 198022430 + 40014561 40018533 L1PA4 6152 + 2155 6138 11618 634 0 2 315 0 1 68 1 0 513 0 2 299 0 5 190 1 0 109 1 0 338 1 0 670 0 5 522 2 1 247 0 1 61 chain 79491 chr3 198022430 + 40025726 40026609 L1PA3long 6157 - 7 892 43831 838 0 2 45 chain 87112 chr3 198022430 + 40026610 40027555 L1PA3long 6157 + 4307 5252 40732 945 chain 44220 chr3 198022430 + 40029321 40029811 L1PA3long 6157 + 5667 6157 63918 490 chain 73359 chr3 198022430 + 40029814 40030914 L1PA10 4194 - 2908 3949 46855 164 0 5 228 1 0 401 3 0 85 1 0 6 27 4 13 1 0 6 1 0 7 7 6 5 1 0 21 2 0 15 63 36 12 2 0 22 1 0 5 chain 25899 chr3 198022430 + 40032328 40032643 L1PA7 6471 + 6146 6463 100441 113 0 2 202 chain 534294 chr3 198022430 + 40035544 40041663 L1PA4 6152 + 1 6143 3679 1130 0 1 316 0 1 395 0 4 2090 0 1 263 0 2 150 0 4 276 0 1 236 0 1 149 1 0 276 1 5 256 1 0 573 0 6 6 chain 13716 chr3 198022430 + 40045985 40046297 L1PB1 5432 - 5 285 145552 5 2 0 18 1 0 13 8 7 14 1 0 24 2 0 14 3 1 5 1 0 18 25 12 15 1 0 45 23 21 47 2 0 9 5 1 11 chain 81041 chr3 198022430 + 40067064 40068128 MER11A 1151 - 0 1136 43172 66 1 0 117 0 1 108 11 19 155 0 1 125 1 0 20 0 1 4 0 1 130 0 1 13 0 1 58 35 0 36 8 5 134 0 98 42 chain 76055 chr3 198022430 + 40073168 40074045 L1PA4 6152 - 2691 3531 45443 591 37 0 249 chain 18905 chr3 198022430 + 40074045 40074262 L1PA4 6152 + 3471 3688 129626 217 chain 219621 chr3 198022430 + 40074262 40076721 L1PA4 6152 + 3690 6148 17911 941 1 0 1517 chain 73905 chr3 198022430 + 40081688 40082484 L1HS 6032 + 5237 6031 46561 607 2 0 187 chain 69685 chr3 198022430 + 40100279 40101076 L1PA7 6471 - 6 801 48531 6 2 0 252 0 1 532 1 0 4 chain 23603 chr3 198022430 + 40103508 40103893 L1PA14 3548 - 63 430 112569 20 1 0 9 6 0 7 0 3 32 1 0 16 1 0 5 1 0 15 4 2 33 16 11 111 1 0 84 1 0 6 2 0 13 chain 121164 chr3 198022430 + 40118466 40119973 LTR12C 1709 - 0 1709 30648 139 1 0 9 0 101 70 0 1 161 0 4 101 8 6 5 1 0 36 8 118 121 1 0 237 12 0 26 8 1 81 0 1 226 0 2 65 12 10 22 0 9 157 chain 5564 chr3 198022430 + 40125197 40125294 L1MDa 1598 + 1051 1147 189436 16 6 5 56 7 0 6 0 7 6 chain 9538 chr3 198022430 + 40147466 40147604 MSTA 426 - 288 426 162893 10 1 0 23 7 8 97 chain 62734 chr3 198022430 + 40160097 40160809 L1PA4 6152 - 0 738 51571 6 0 2 105 0 1 127 1 24 473 chain 29657 chr3 198022430 + 40161086 40161417 L1PA3long 6157 + 5824 6157 86042 159 0 2 172 chain 33653 chr3 198022430 + 40166686 40167108 MLT2A1 477 - 10 476 78165 43 0 40 60 1 0 151 8 12 18 0 1 141 chain 330268 chr3 198022430 + 40175393 40179176 L1P1 4361 + 1 3783 12193 146 14 11 128 0 1 2581 0 1 914 chain 16413 chr3 198022430 + 40180386 40180662 L1MA5A 2387 - 91 332 137175 55 37 9 15 6 3 59 2 0 48 1 0 38 1 0 14 chain 507993 chr3 198022430 + 40196894 40202518 L1PA3long 6157 - 410 6157 6321 1449 1 0 2090 0 2 1165 0 1 136 8 136 519 8 0 96 1 2 151 chain 9783 chr3 198022430 + 40241663 40241830 MER30 238 - 3 190 161689 36 3 0 29 4 12 30 4 0 9 7 26 45 chain 8714 chr3 198022430 + 40242532 40242656 MER85 139 + 4 139 167123 51 3 5 30 0 10 16 1 0 23 chain 104202 chr3 198022430 + 40260830 40261985 L1PA4 6152 - 6 1159 35690 10 3 0 134 0 1 1008 chain 12991 chr3 198022430 + 40277582 40277780 Tigger3a 397 + 53 334 148279 23 23 82 72 0 10 19 0 14 61 chain 129026 chr3 198022430 + 40280399 40281806 L1PA3long 6157 - 0 1407 28311 5 1 0 773 0 1 628 chain 21718 chr3 198022430 + 40281807 40282082 L1P1 4361 + 32 308 121321 116 13 14 146 chain 44511 chr3 198022430 + 40295615 40296250 PRIMA4_LTR 623 - 0 623 63567 239 1 0 56 23 22 38 13 8 72 4 0 98 1 2 51 19 17 20 chain 12254 chr3 198022430 + 40298884 40299023 MER85 139 - 0 139 151189 139 chain 537414 chr3 198022430 + 40312923 40318997 L1PA5 6144 + 47 6144 3253 1419 0 17 238 0 3 1294 0 1 1322 0 4 949 1 0 597 1 0 253 chain 35077 chr3 198022430 + 40319553 40320080 L1P4 1494 + 289 801 76082 44 11 4 209 2 0 6 25 21 14 0 1 175 1 0 4 6 5 6 1 0 23 chain 21919 chr3 198022430 + 40322903 40323194 AluYk4 311 - 3 262 120551 190 33 1 68 chain 29228 chr3 198022430 + 40347144 40347452 AluYa5 310 - 2 310 87919 308 chain 62209 chr3 198022430 + 40365845 40366803 L1PA16 3655 + 2630 3588 51799 47 1 0 47 0 3 6 3 0 7 8 17 45 5 0 83 38 28 4 1 0 65 0 2 148 2 1 56 1 12 89 3 1 247 27 28 12 3 0 10 chain 50400 chr3 198022430 + 40370174 40370830 PABL_B 668 - 0 666 58714 102 2 26 68 0 2 40 0 2 141 25 6 146 0 1 132 chain 11839 chr3 198022430 + 40384814 40385291 MER41B 635 + 481 634 152873 33 324 0 120 chain 68526 chr3 198022430 + 40386994 40387750 L1PA4 6152 - 1324 2080 49026 756 chain 114816 chr3 198022430 + 40387753 40389050 L1PA4 6152 + 4838 6145 32840 460 0 4 13 0 3 17 0 1 386 1 0 316 0 1 7 1 3 96 chain 174310 chr3 198022430 + 40390111 40393369 MER41-int 2638 + 86 2622 21560 17 34 9 52 34 19 30 1 0 4 2 0 12 2 0 19 20 15 33 4 0 103 1 0 23 0 3 34 1 0 30 0 4 181 1 0 135 343 14 252 1 0 48 0 1 132 364 3 58 8 7 41 1 2 4 1 0 175 1 8 15 0 1 98 1 0 51 9 11 64 15 17 40 4 3 22 2 0 219 0 1 80 0 1 110 0 1 157 0 8 75 19 16 5 0 3 70 chain 3561 chr3 198022430 + 40406120 40406172 HAL1 992 - 799 852 214305 23 1 0 9 0 2 19 chain 40849 chr3 198022430 + 40463865 40464314 L1PA3long 6157 - 15 464 68098 449 chain 40396 chr3 198022430 + 40482463 40482913 L1PA5 6144 + 5361 5810 68741 354 1 0 95 chain 30104 chr3 198022430 + 40482913 40483246 L1PA5 6144 + 5811 6144 84469 333 chain 6495 chr3 198022430 + 40489234 40489575 L1MA2 4263 + 4012 4218 181297 46 7 0 11 1 2 27 218 90 18 1 0 12 chain 11980 chr3 198022430 + 40517801 40518005 MER4D1 891 - 680 891 152291 5 1 0 58 29 36 46 2 3 63 chain 5900 chr3 198022430 + 40531821 40531984 MSTD-int 1705 + 44 215 186192 43 43 45 16 18 21 11 1 4 31 chain 44475 chr3 198022430 + 40539865 40540411 L1PA7 6471 - 166 713 63609 79 0 1 227 2 1 143 5 6 90 chain 12640 chr3 198022430 + 40568344 40568498 AluSp 311 - 10 164 149680 154 chain 40493 chr3 198022430 + 40579090 40579699 Tigger1 2417 + 642 1286 68599 48 0 7 17 0 1 42 7 11 32 1 4 40 12 20 57 0 3 26 0 1 9 4 8 61 0 9 7 11 6 235 chain 25304 chr3 198022430 + 40586445 40586746 AluSp 311 - 10 311 103205 301 chain 29216 chr3 198022430 + 40588805 40589138 L1PA5 6144 - 6 339 87978 333 chain 22966 chr3 198022430 + 40594950 40595243 AluY 311 + 0 300 115775 15 3 0 110 7 18 8 1 0 149 chain 25218 chr3 198022430 + 40600017 40600300 AluSp 311 - 17 300 103645 283 chain 24908 chr3 198022430 + 40602386 40602787 LTR7 482 + 0 482 105289 54 23 61 67 19 19 23 6 7 19 0 30 27 1 0 5 1 12 58 0 2 98 chain 280818 chr3 198022430 + 40602789 40606505 HERVH-int 3825 + 0 3825 14594 230 0 1 299 1 0 11 1 0 4 0 1 24 2 1 8 2 1 12 24 12 14 1 38 27 2 0 14 1 0 14 23 0 7 130 0 31 17 20 10 0 3 47 2 0 397 15 0 203 9 0 29 0 2 10 1 0 215 4 31 83 3 15 190 1 5 128 0 3 535 0 1 5 1 0 59 0 1 61 0 35 11 35 0 222 9 11 39 0 210 268 0 2 225 chain 28644 chr3 198022430 + 40607762 40608169 LTR7 482 + 0 482 90539 54 23 61 109 0 1 24 1 0 14 1 32 19 0 10 108 4 0 50 chain 65153 chr3 198022430 + 40611512 40612408 MER4D0 881 - 0 881 50500 209 1 0 4 0 1 18 21 5 48 1 0 46 2 0 22 1 2 243 1 2 170 6 0 90 0 8 13 chain 32257 chr3 198022430 + 40632918 40633317 MLT2A1 477 - 79 477 80426 13 0 2 213 4 1 169 chain 127296 chr3 198022430 + 40670000 40671604 THE1D-int 1627 + 18 1627 28744 701 0 5 627 13 14 84 1 0 168 1 0 4 0 1 5 chain 396774 chr3 198022430 + 40673524 40679230 L1PB1 5432 + 17 5422 10213 9 6 0 274 16 15 47 0 3 115 1 0 71 0 2 34 0 4 171 2 0 6 0 2 5 3 1 56 0 1 172 4 5 380 7 9 12 1 0 744 3 0 98 1 0 239 0 1 273 11 40 19 1 0 61 0 3 273 331 0 241 1 0 312 25 20 9 0 1 695 4 13 101 5 7 61 9 32 140 0 8 301 19 15 20 1 0 8 1 0 5 12 8 9 2 0 52 2 1 15 1 0 45 1 0 15 69 50 24 1 0 22 2 1 11 3 2 16 chain 19888 chr3 198022430 + 40709949 40710197 L1PA8 5853 + 5610 5853 127524 69 1 0 14 1 0 8 1 0 43 1 0 16 2 1 92 chain 25933 chr3 198022430 + 40746208 40746557 MLT2A1 477 + 0 359 100290 44 1 2 66 5 6 24 0 1 26 0 4 151 1 0 5 0 4 26 chain 6194 chr3 198022430 + 40746586 40746703 L1PB1 5432 + 5115 5220 183621 19 1 0 10 1 0 13 25 15 48 chain 3217 chr3 198022430 + 40746726 40746765 L1PB1 5432 + 5241 5280 220618 39 chain 6670 chr3 198022430 + 40746766 40746919 L1PB1 5432 + 5280 5414 179903 16 1 0 4 2 0 7 9 1 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 chain 14915 chr3 198022430 + 40774965 40775141 L1PA5 6144 + 5948 6131 141589 41 0 7 135 chain 241897 chr3 198022430 + 40799096 40804709 L1MA2 4263 + 502 4105 16676 17 0 1 391 21 17 4 1 0 11 1 0 4 9 13 9 0 1 133 16 37 75 4 0 6 1713 11 18 1 0 66 0 1 92 7 6 4 0 1 58 0 2 120 2 31 160 0 1 6 0 8 28 0 4 121 38 34 366 5 4 158 26 23 141 17 12 49 368 1 27 1 0 58 1 0 75 4 6 162 1 0 130 0 1 29 1 0 18 41 41 31 2 0 239 2 1 9 1 0 10 5 2 28 25 37 11 1 0 140 3 0 154 11 9 77 3 16 47 chain 64755 chr3 198022430 + 40799807 40800518 L1PA3long 6157 - 981 1692 50519 711 chain 89605 chr3 198022430 + 40800518 40801506 L1PA3long 6157 + 5168 6157 39779 839 0 1 149 chain 3825 chr3 198022430 + 40827644 40827723 MADE1 96 + 0 96 209996 23 6 22 26 9 10 15 chain 101180 chr3 198022430 + 40845541 40846672 L1PA5 6144 + 5005 6141 36468 292 0 5 839 chain 9482 chr3 198022430 + 40925994 40926104 LTR8 732 - 39 149 163150 110 chain 5485 chr3 198022430 + 40930698 40930826 MER5A1 166 - 6 136 190174 19 16 17 29 23 24 41 chain 544585 chr3 198022430 + 40943898 40949923 L1PA3long 6157 - 0 6155 2129 5 0 2 723 1 0 1738 1 0 906 1 2 1877 9 137 611 4 5 149 chain 6502 chr3 198022430 + 40950001 40950075 LTR17 781 - 253 327 181221 74 chain 103573 chr3 198022430 + 40972968 40974675 L1M1 2793 + 665 2424 35841 30 98 111 13 21 23 51 12 9 101 25 24 107 7 8 38 1 0 70 4 0 18 5 0 6 27 25 57 1 3 21 1 0 6 9 13 47 0 6 219 2 0 171 0 1 36 3 7 47 4 9 68 0 4 83 8 11 86 4 3 14 11 20 9 0 18 39 0 1 7 1 0 119 chain 3663 chr3 198022430 + 40976234 40976294 L1MA7 2200 - 226 284 212520 19 8 6 33 chain 19911 chr3 198022430 + 40976849 40977062 L1PA2 6032 - 3 216 127434 213 chain 503472 chr3 198022430 + 40986790 40992896 L1PA6 6164 - 2 6164 6640 555 0 1 196 0 3 10 0 2 327 0 11 250 0 4 11 18 3 596 0 10 653 0 1 256 0 5 24 0 4 22 0 1 11 4 0 9 0 1 238 0 6 175 0 1 124 0 1 261 0 2 62 0 1 56 0 2 78 1 2 229 0 3 272 4 5 481 3 0 68 13 10 142 0 6 57 0 1 89 0 17 173 5 1 66 1 0 154 1 2 211 1 0 4 1 2 194 chain 422003 chr3 198022430 + 40995360 40999998 L1PA3long 6157 - 0 4639 9488 5 2 0 142 0 1 1676 0 1 113 0 1 523 1 0 201 0 1 1975 chain 120334 chr3 198022430 + 41000001 41001512 L1P1 4361 - 2858 4359 30928 673 31 31 98 7 0 127 1 0 550 4 2 20 chain 3412 chr3 198022430 + 41051647 41051689 MLT2A2 560 - 0 41 216907 4 1 0 37 chain 3210 chr3 198022430 + 41076146 41076184 tRNA-Cys-TGY 72 - 34 72 220748 38 chain 28587 chr3 198022430 + 41095634 41096010 THE1C 375 - 0 375 90800 25 1 0 230 3 0 12 0 1 91 0 2 14 chain 26862 chr3 198022430 + 41108452 41108864 L1MA2 4263 + 3716 4114 96766 80 13 10 53 6 5 82 21 19 93 7 0 47 1 0 9 chain 3594 chr3 198022430 + 41139587 41139653 MER63A 208 - 52 122 213762 18 12 16 36 chain 5809 chr3 198022430 + 41178561 41178633 MLT1A 405 - 38 111 187050 9 0 1 63 chain 25066 chr3 198022430 + 41191836 41192133 AluSc5 308 - 2 299 104476 297 chain 108725 chr3 198022430 + 41269547 41271183 L1PA15 4387 - 60 1714 34502 12 3 1 44 6 3 50 1 0 9 4 0 20 2 1 57 1 0 6 7 9 11 1 0 172 1 0 18 0 1 4 1 0 8 13 11 62 3 0 16 0 2 51 24 6 39 0 3 26 4 10 202 5 7 66 8 26 80 3 9 11 6 0 106 2 0 108 11 13 48 2 0 166 2 1 23 5 8 68 0 18 18 0 4 20 chain 10490 chr3 198022430 + 41272306 41272517 MER30 238 - 8 238 158288 41 3 0 16 6 12 37 4 17 17 0 1 38 34 36 15 chain 43104 chr3 198022430 + 41308556 41309066 L1PA8A 6298 - 8 518 65284 510 chain 71456 chr3 198022430 + 41318358 41319309 L1PB 1623 + 150 1143 47716 21 3 0 17 14 11 38 0 10 22 2 1 57 0 5 66 2 1 88 1 0 279 0 1 88 0 2 168 0 33 85 chain 489903 chr3 198022430 + 41319320 41325269 L1PA6 6164 + 0 6139 7372 108 0 1 4 6 12 119 2 1 322 1 0 233 0 19 84 0 4 389 0 3 147 1 0 15 22 7 98 0 2 201 0 1 195 6 171 33 1 2 42 0 2 118 16 0 433 0 1 416 8 8 49 9 13 254 0 4 183 0 1 101 0 1 824 0 2 691 0 5 175 2 0 77 0 1 335 0 2 66 30 31 133 chain 125254 chr3 198022430 + 41325295 41327158 L1PB1 5432 + 3560 5364 29310 42 2 1 22 7 11 88 27 11 28 4 3 91 27 7 524 1 0 140 5 7 93 4 5 72 0 2 7 7 6 84 41 43 256 1 0 14 3 0 21 1 0 9 1 0 9 6 2 11 2 0 51 2 1 11 7 6 42 1 0 16 3 0 10 5 1 5 5 0 15 23 20 17 chain 171281 chr3 198022430 + 41346682 41348662 SVA_D 2077 + 0 2077 21903 19 5 0 182 0 11 605 40 0 91 0 78 48 2 4 15 0 12 287 0 49 664 10 0 12 chain 33435 chr3 198022430 + 41352676 41353418 MLT2A1 477 + 4 469 78511 159 10 7 214 309 35 50 chain 5843 chr3 198022430 + 41355903 41355975 L1PB4 2604 - 68 140 186743 72 chain 29218 chr3 198022430 + 41358554 41358865 AluYb8 318 - 7 318 87971 311 chain 10018 chr3 198022430 + 41363822 41363965 MER50 708 + 562 708 160493 13 1 0 63 8 12 58 chain 25017 chr3 198022430 + 41364433 41364727 AluSp 311 - 17 311 104698 294 chain 157744 chr3 198022430 + 41383977 41386763 L1PA11 4918 + 2482 4629 23629 802 326 0 305 1 23 83 0 1 127 0 2 139 2 0 126 5 6 65 314 0 23 0 5 121 3 7 14 1 0 62 2 1 63 0 3 14 2 0 14 1 0 20 44 31 15 1 0 13 60 44 18 chain 40518 chr3 198022430 + 41401247 41401840 L1PA11 4918 + 4001 4578 68569 314 0 2 16 0 2 54 6 5 80 2 0 14 1 0 20 20 12 10 16 12 12 2 1 12 3 0 11 chain 512225 chr3 198022430 + 41411847 41420704 L1PA7 6471 + 3 6469 5950 112 8 0 252 6 21 22 4 5 586 0 1 4 13 12 75 1 2 298 0 3 119 0 1 650 0 5 380 0 1 83 1 2 53 3 4 163 8 10 194 0 1 1318 0 1 280 7 11 274 0 1 112 1 4 443 2 0 115 2 0 81 0 1 134 0 10 239 2432 0 370 1 2 11 chain 177201 chr3 198022430 + 41417904 41419870 L1PA3long 6157 + 4184 6152 21233 759 0 1 124 0 1 1083 chain 31522 chr3 198022430 + 41419913 41420282 L1PA5 6144 + 5774 6144 81607 220 0 1 149 chain 313029 chr3 198022430 + 41428866 41432397 L1PA4 6152 - 0 3542 12892 7 0 1 1792 0 4 930 0 1 180 4 8 25 0 1 593 chain 8413 chr3 198022430 + 41432397 41432580 L1MA5A 2387 - 131 272 168521 26 36 0 9 12 9 25 1 0 32 3 1 39 chain 22855 chr3 198022430 + 41444381 41444656 AluSp 311 + 22 296 116306 248 1 0 26 chain 15622 chr3 198022430 + 41452747 41453302 MER4B 649 + 120 424 139516 19 1 31 26 2 25 110 319 0 10 0 15 68 chain 283030 chr3 198022430 + 41466146 41469969 L1PA10 4194 + 325 4142 14468 10 3 1 17 1 0 10 1 0 7 1 0 10 5 0 5 3 0 10 16 8 59 37 22 123 0 1 151 9 8 203 0 1 4 2 0 124 5 8 72 0 4 39 7 6 14 0 16 25 7 4 48 0 1 265 6 5 110 0 1 141 0 2 132 0 3 25 1 4 83 5 6 106 5 9 62 0 1 378 0 5 349 7 0 108 1 2 8 1 0 565 1 4 42 1 0 22 0 1 17 8 0 7 0 8 9 0 1 276 2 1 12 2 1 9 3 0 26 chain 182345 chr3 198022430 + 41486320 41488370 L1PA4 6152 + 4095 6143 20754 1289 1 0 514 2 1 244 chain 32209 chr3 198022430 + 41495321 41495678 L1PA5 6144 + 5787 6144 80509 357 chain 59926 chr3 198022430 + 41533224 41533894 L1PA3long 6157 - 0 670 52860 670 chain 310114 chr3 198022430 + 41533894 41537392 L1HS 6032 + 1840 5341 13001 2780 0 3 718 chain 24663 chr3 198022430 + 41542702 41542992 AluY 311 + 0 286 106650 29 4 0 257 chain 147861 chr3 198022430 + 41552675 41554845 L1PB1 5432 + 2360 4521 24896 126 9 8 258 49 50 40 4 0 81 6 10 117 0 2 5 2 0 14 3 11 180 6 7 47 7 6 124 0 3 98 14 19 355 1 0 41 6 5 21 1 0 6 3 4 173 40 21 6 2 0 178 5 4 71 1 0 70 chain 25254 chr3 198022430 + 41575300 41575586 AluYk4 311 - 14 301 103457 230 0 1 56 chain 219750 chr3 198022430 + 41581571 41584326 L1PA7 6471 - 10 2816 17897 54 1 11 74 16 17 18 1 21 52 0 1 483 0 1 9 9 11 92 0 3 12 1 2 95 0 3 10 3 1 151 0 2 656 1 0 4 1 13 101 4 5 388 10 1 138 1 7 370 chain 6254 chr3 198022430 + 41595642 41595714 L1MA4A 3247 + 3058 3129 183141 49 1 0 22 chain 443169 chr3 198022430 + 41600369 41605927 L1PA4 6152 - 0 5548 8947 8 0 1 418 0 1 422 1 4 93 0 1 33 0 5 203 0 1 85 0 4 1361 0 3 281 6 7 804 2 4 100 1 0 368 1 3 173 1 2 523 2 0 6 0 2 16 68 59 202 25 0 355 chain 2662 chr3 198022430 + 41609397 41609457 L1MD3 1191 - 32 91 230881 28 18 17 14 chain 29198 chr3 198022430 + 41620976 41621282 AluYg6 310 - 4 310 88061 306 chain 15293 chr3 198022430 + 41623514 41623865 THE1B 368 + 12 368 140507 96 110 108 12 6 14 64 7 6 30 0 3 5 3 0 18 chain 12992 chr3 198022430 + 41632892 41633077 MER30 238 - 2 205 148274 75 1 7 29 10 22 70 chain 5932 chr3 198022430 + 41633923 41634036 L1PB1 5432 + 5308 5416 185856 19 2 0 5 1 0 14 2 0 24 1 0 8 2 5 8 1 0 13 1 0 12 chain 423774 chr3 198022430 + 41658451 41664236 L1PA8 5853 + 50 5833 9450 21 2 0 11 1 0 11 22 15 53 1 2 139 21 6 67 2 3 272 1 0 4 1 2 1361 2 1 32 6 2 177 0 1 45 0 4 164 0 1 73 0 6 103 0 3 100 9 8 42 2 1 106 1 0 72 0 6 18 0 396 15 399 0 193 0 1 391 0 1 65 6 7 533 1 2 282 0 1 141 2 0 6 12 14 66 0 1 226 0 9 6 0 2 180 11 12 19 0 4 7 1 0 46 2 0 37 4 0 34 1 0 13 1 0 48 2 1 19 1 0 73 chain 537008 chr3 198022430 + 41683695 41689832 L1PA4 6152 - 14 6144 3310 653 1 0 2325 1 2 299 0 1 1644 0 1 4 11 10 486 12 5 128 1 0 572 chain 31042 chr3 198022430 + 41696669 41697027 L1PA4 6152 + 5791 6150 82449 23 4 5 331 chain 11761 chr3 198022430 + 41724577 41724766 LTR35 598 + 49 242 153213 57 2 0 13 18 25 67 1 0 31 chain 88963 chr3 198022430 + 41730955 41731936 L1PA3long 6157 + 5169 6157 40021 964 0 7 17 chain 77363 chr3 198022430 + 41737166 41738169 LTR13 1007 + 0 1007 44795 73 2 0 308 4 5 242 2 1 54 25 28 197 0 5 42 23 21 31 chain 129699 chr3 198022430 + 41777207 41778632 L1PA4 6152 - 16 1448 28154 91 0 7 1334 chain 41338 chr3 198022430 + 41778632 41779091 L1PA4 6152 + 4265 4724 67141 459 chain 15502 chr3 198022430 + 41802008 41802309 Tigger4b 360 + 22 351 139892 57 0 3 19 15 38 18 2 0 4 0 1 28 15 14 22 7 11 51 7 0 6 5 12 45 chain 57448 chr3 198022430 + 41806399 41807061 L1PA5 6144 + 5484 6142 54266 202 1 0 308 0 1 140 4 0 7 chain 3311 chr3 198022430 + 41809978 41810016 MLT1G1 539 + 240 278 218759 38 chain 284957 chr3 198022430 + 41813532 41816717 L1PA4 6152 + 2956 6151 14354 103 0 3 121 1 0 2634 0 1 157 10 11 142 0 6 17 chain 119167 chr3 198022430 + 41818074 41819349 L1HS 6032 - 2164 3439 31347 1275 chain 200935 chr3 198022430 + 41819349 41821490 L1HS 6032 + 3891 6032 19149 2141 chain 293528 chr3 198022430 + 41844981 41848213 L1PA3long 6157 - 2 3238 13796 841 0 4 2391 chain 534112 chr3 198022430 + 41865674 41871788 L1PA4 6152 + 3 6141 3694 732 0 1 296 0 2 397 3 5 4 0 1 561 0 1 1178 1 0 67 9 21 692 0 1 389 0 4 927 0 4 8 2 0 191 1 0 656 chain 157152 chr3 198022430 + 41873041 41875390 L1PA8 5853 - 4 2037 23705 89 1 0 19 3 2 51 1 0 9 3 2 69 2 0 44 1 0 279 0 8 80 0 1 184 0 3 6 3 0 404 0 1 14 0 4 43 0 1 49 0 1 117 3 4 155 0 1 88 329 2 170 4 3 7 0 1 122 chain 139309 chr3 198022430 + 41881883 41883645 SVA_A 1864 + 18 1864 26246 513 10 49 65 8 5 77 2 0 73 3 0 12 10 26 49 1 0 26 2 0 50 1 4 94 17 15 31 8 11 27 1 0 63 2 0 14 0 37 153 0 1 413 0 1 37 chain 115727 chr3 198022430 + 41884835 41886221 LTR12C 1709 - 0 1709 32550 84 7 6 61 1 0 72 0 1 257 0 4 106 8 324 515 0 4 275 chain 3730 chr3 198022430 + 41887252 41887296 MSTB1 431 + 16 60 211464 44 chain 164679 chr3 198022430 + 41891309 41893182 L1PA4 6152 - 3 2615 22706 110 0 1 34 0 1 695 0 4 332 0 733 702 chain 22303 chr3 198022430 + 41893182 41893429 L1PA4 6152 + 2931 3177 118089 240 1 0 6 chain 31562 chr3 198022430 + 41893430 41893786 L1PA4 6152 + 3177 3545 81541 74 0 12 282 chain 31604 chr3 198022430 + 41903598 41904219 L1M1 2793 - 1543 2132 81477 66 35 37 108 1 0 36 1 0 54 4 0 6 0 1 35 17 14 54 1 0 8 2 0 29 1 0 30 2 0 6 15 12 10 8 4 11 55 42 26 chain 3391 chr3 198022430 + 41936170 41936262 MIRb 242 - 106 214 217264 35 41 57 16 chain 16742 chr3 198022430 + 41940991 41941213 MER30 238 + 0 238 136278 109 4 14 30 0 6 79 chain 510335 chr3 198022430 + 41966597 41972976 L1PA7 6471 + 0 6470 6136 403 0 1 308 0 57 12 3 1 169 1 0 4 1 2 253 0 4 539 1 0 48 3 6 142 1 0 153 0 2 393 1 0 135 7 0 52 0 2 5 2 1 220 0 1 13 0 1 169 0 4 26 0 1 31 1 0 245 0 4 90 4 0 32 10 9 38 9 23 54 3 2 289 3 0 45 12 13 188 0 1 10 1 0 324 0 4 249 0 1 351 21 28 70 12 4 388 2 1 191 0 1 73 9 17 549 0 7 11 chain 5885 chr3 198022430 + 41978013 41978109 L1MA2 4263 + 4010 4103 186328 48 7 0 19 6 10 16 chain 21167 chr3 198022430 + 41988537 41988794 AluY 311 + 0 274 123318 132 0 1 10 1 17 114 chain 31253 chr3 198022430 + 42006075 42006498 LTR7B 505 + 0 495 82077 105 0 10 69 6 68 26 0 2 85 1 0 76 14 13 41 chain 6188 chr3 198022430 + 42006549 42006622 MER4D1 891 + 817 890 183675 73 chain 14010 chr3 198022430 + 42008374 42008548 MER41B 635 + 462 635 144547 4 1 0 169 chain 36117 chr3 198022430 + 42023211 42023708 L1M1 2793 - 1055 1553 74744 102 0 1 4 6 8 54 0 2 21 1 4 274 7 0 28 chain 107173 chr3 198022430 + 42024110 42025349 SVA_C 1631 - 18 1392 34923 531 1 79 14 0 4 35 2 7 18 0 1 8 22 69 608 chain 2469 chr3 198022430 + 42043056 42043261 L2a 937 - 612 822 233488 7 1 0 17 158 164 22 chain 3556 chr3 198022430 + 42059365 42059402 MER66C 541 - 124 161 214428 37 chain 22998 chr3 198022430 + 42070395 42070751 MSTA 426 - 22 425 115630 43 0 2 114 41 43 23 0 39 7 1 0 19 1 5 5 0 1 102 chain 4183 chr3 198022430 + 42081808 42081856 MER66C 541 - 119 167 204791 48 chain 19406 chr3 198022430 + 42119077 42119310 L1PA15 4387 - 1341 1574 128927 233 chain 194701 chr3 198022430 + 42145210 42147958 L1P2 5180 + 2 2433 19606 141 10 21 83 3 2 259 1 0 7 38 11 261 11 9 139 0 26 276 317 0 1086 6 0 110 chain 38627 chr3 198022430 + 42151135 42151586 L1PA5 6144 + 5675 6127 71256 327 0 1 124 chain 23655 chr3 198022430 + 42269398 42269671 AluSp 311 + 11 291 112280 242 0 7 31 chain 178327 chr3 198022430 + 42276886 42279779 L1MA3 4352 + 1796 4352 21133 517 1 0 33 0 1 170 13 8 17 0 1 4 1 0 230 0 7 47 0 8 48 0 4 113 1 0 6 6 7 204 0 1 76 5 13 382 359 43 29 7 1 138 0 1 15 1 0 173 54 26 60 1 0 71 10 8 24 8 6 27 1 0 9 15 11 17 chain 510679 chr3 198022430 + 42280493 42286137 L1PA3long 6157 + 6 6157 6101 88 0 503 3349 0 1 99 0 1 1937 1 3 170 chain 53118 chr3 198022430 + 42300239 42300848 L1PA7 6471 + 5854 6465 56948 282 0 1 183 1 2 143 chain 3553 chr3 198022430 + 42312950 42312989 MLT1A 405 - 23 62 214495 39 chain 21415 chr3 198022430 + 42322417 42322760 THE1D 372 + 0 352 122461 65 0 10 62 51 50 5 0 1 147 1 0 12 chain 553023 chr3 198022430 + 42323417 42329566 L1PA3long 6157 - 0 6156 1066 142 0 1 3283 0 2 465 0 2 1264 0 3 664 1 0 330 chain 22378 chr3 198022430 + 42357926 42358189 AluY 311 + 29 293 118593 103 0 1 160 chain 4507 chr3 198022430 + 42358189 42358250 L1PB4 2604 - 864 933 200701 40 0 8 21 chain 13239 chr3 198022430 + 42372367 42372533 L1PA8 5853 + 5689 5853 147324 50 3 2 19 1 0 93 chain 5717 chr3 198022430 + 42394376 42394581 LTR16C 481 - 1 211 187966 69 119 124 17 chain 12950 chr3 198022430 + 42426772 42426979 Tigger3a 397 + 51 305 148434 20 19 68 122 7 5 39 chain 6092 chr3 198022430 + 42479805 42479991 L1MB8 1703 + 1546 1661 184476 44 81 19 16 9 0 36 chain 21967 chr3 198022430 + 42487125 42487476 THE1D 372 + 0 366 120364 50 15 25 6 3 0 19 11 10 50 0 1 8 18 26 171 chain 3666 chr3 198022430 + 42489799 42489841 MER31B 477 + 18 60 212465 42 chain 3033 chr3 198022430 + 42490337 42490371 MER67B 652 + 507 541 224343 34 chain 29198 chr3 198022430 + 42490371 42490687 AluYb8 318 + 0 315 88060 266 3 2 47 chain 23398 chr3 198022430 + 42506975 42507396 L1MA2 4263 + 3797 4165 113660 11 3 0 148 11 9 93 7 0 47 1 0 8 2 0 14 3 1 11 46 10 16 chain 190092 chr3 198022430 + 42523079 42525915 L1PBa 3878 + 1151 3703 20038 40 2 0 116 1 0 70 3 1 4 1 0 40 1 26 164 2 4 234 9 10 44 4 1 602 304 0 134 0 1 5 1 3 64 3 2 318 2 0 5 0 1 17 0 1 136 0 1 25 3 0 193 6 7 283 chain 10374 chr3 198022430 + 42599469 42599668 MER20 218 + 0 197 158812 24 1 2 54 10 11 54 4 0 13 8 9 11 7 6 13 chain 18027 chr3 198022430 + 42613324 42613541 AluSz6 309 + 82 299 132786 217 chain 18584 chr3 198022430 + 42631869 42632090 AluY 311 + 29 295 131275 91 0 3 9 0 1 36 0 40 27 0 1 58 chain 6677 chr3 198022430 + 42634447 42634606 MER2 342 + 8 210 179847 24 61 104 74 chain 21127 chr3 198022430 + 42651503 42651783 AluSp 311 - 20 297 123463 49 9 7 97 0 1 82 10 8 33 chain 43602 chr3 198022430 + 42759531 42760083 MER41A 554 + 0 554 64681 63 8 10 69 1 0 254 0 1 4 1 0 140 0 1 12 chain 90805 chr3 198022430 + 42761896 42763331 PABL_A-int 1935 + 98 1533 39354 10 2 0 23 11 8 9 0 1 147 1 0 4 0 1 31 2 0 7 1 0 5 0 1 25 1 0 5 0 5 29 11 2 114 16 8 14 1 0 15 1 0 4 51 50 177 5 3 30 0 2 6 0 3 10 6 12 27 1 0 56 1 5 126 1 0 43 0 5 18 5 0 7 8 14 13 15 17 45 0 5 275 2 0 18 chain 41901 chr3 198022430 + 42763331 42763831 MER41-int 2638 + 2121 2636 66755 326 0 1 74 0 14 100 chain 42695 chr3 198022430 + 42763842 42764713 MER41A 554 + 0 554 65779 396 0 1 4 1 0 29 316 0 28 1 6 6 5 0 64 6 5 15 chain 191159 chr3 198022430 + 42778427 42780573 L1PA6 6164 - 19 2171 19945 823 0 4 1016 1 3 306 chain 4685 chr3 198022430 + 42786834 42786906 MIR 256 - 110 184 198689 42 7 9 23 chain 22478 chr3 198022430 + 42809185 42809479 AluSq2 311 + 5 297 118118 50 4 0 78 9 11 153 chain 14785 chr3 198022430 + 42811627 42811995 LTR12C 1709 + 932 1203 141988 166 51 20 15 113 47 23 chain 4628 chr3 198022430 + 42813275 42813379 L1MC2 1988 + 1811 1904 199321 32 24 20 32 7 0 9 chain 17055 chr3 198022430 + 42820531 42820711 AluYa5 310 + 123 303 135447 180 chain 167011 chr3 198022430 + 42838477 42840799 SVA_F 1814 + 9 1814 22393 872 1 0 55 0 1 5 132 20 215 405 0 637 chain 2287 chr3 198022430 + 42839413 42839447 SVA_F 1814 + 847 880 235513 9 1 0 24 chain 3660 chr3 198022430 + 42839447 42839490 SVA_F 1814 + 881 924 204968 43 chain 7097 chr3 198022430 + 42839818 42839896 SVA_F 1814 + 1187 1265 166052 78 chain 23325 chr3 198022430 + 42839896 42840161 SVA_F 1814 + 898 1177 114057 49 0 15 39 1 0 10 1 0 116 0 1 49 chain 60853 chr3 198022430 + 42847179 42847948 MER4E1 777 - 1 777 52406 23 0 2 97 8 9 94 6 4 215 1 5 20 0 1 31 0 1 274 chain 42445 chr3 198022430 + 42849096 42849660 MER41A 554 - 11 542 66084 450 0 1 4 35 1 75 chain 2748 chr3 198022430 + 42849550 42849580 MER41A 554 - 431 461 219023 30 chain 8055 chr3 198022430 + 42851405 42851562 MER39 703 - 510 703 170727 54 10 5 11 26 24 25 0 43 31 chain 22444 chr3 198022430 + 42861839 42862106 AluY 311 + 36 304 118273 96 0 1 171 chain 5357 chr3 198022430 + 42874904 42874979 L1PB1 5432 - 28 99 191463 12 1 0 22 1 0 24 2 0 13 chain 5142 chr3 198022430 + 42885623 42885693 MADE2 80 - 0 71 193639 44 1 2 25 chain 493923 chr3 198022430 + 42899341 42905508 L1PA7 6471 + 626 6467 7177 442 0 1 92 0 1 980 1 0 6 310 0 484 16 0 68 0 1 152 0 3 158 11 0 917 1 0 346 0 2 192 1 0 187 10 14 312 0 1 360 4 5 16 1 2 174 0 1 73 1 4 83 1 0 51 5 0 381 1 2 330 chain 20795 chr3 198022430 + 42924784 42925143 THE1B 368 + 0 368 124620 111 4 6 51 42 41 4 0 1 10 10 18 64 7 6 56 chain 24442 chr3 198022430 + 42925998 42926346 MER83B 357 + 2 357 107852 127 36 43 185 chain 3195 chr3 198022430 + 42929798 42930053 L1M4c 1769 + 53 283 221016 9 0 23 16 179 133 17 8 6 26 chain 15074 chr3 198022430 + 42930160 42930350 MER75B 242 - 0 192 141103 23 1 3 166 chain 50073 chr3 198022430 + 42932261 42932877 PABL_A 660 - 0 660 58965 82 2 0 240 1 0 64 2 46 127 1 0 42 1 5 54 chain 2966 chr3 198022430 + 42932931 42932966 L1M4c 1769 + 814 849 225743 35 chain 18772 chr3 198022430 + 42934306 42934547 LTR8 732 - 459 716 130764 97 0 1 13 0 6 116 1 10 14 chain 111413 chr3 198022430 + 42950561 42951872 SVA_B 1603 - 5 1597 33832 583 1 0 39 1 0 37 0 163 188 0 116 402 7 31 20 20 0 13 chain 84567 chr3 198022430 + 42963056 42963978 L1PA3long 6157 - 0 926 41694 849 0 4 73 chain 9734 chr3 198022430 + 42965797 42965930 MER61-int 3695 - 1044 1178 161920 41 6 7 86 chain 4001 chr3 198022430 + 42972567 42972828 L1MEf 1413 - 808 1069 207371 24 189 190 27 1 0 20 chain 12203 chr3 198022430 + 42999790 42999935 L1PA6 6164 - 8 151 151411 100 2 0 43 chain 123213 chr3 198022430 + 43014821 43016390 THE1A-int 1579 + 1 1573 29973 419 7 11 78 0 1 599 11 10 128 0 1 259 1 0 53 1 0 13 chain 29901 chr3 198022430 + 43018290 43018605 AluYb8 318 + 0 315 85092 315 chain 40478 chr3 198022430 + 43028528 43029028 LTR10D 510 - 0 510 68622 263 14 19 133 1 0 9 3 9 77 chain 29794 chr3 198022430 + 43031110 43031420 AluYa5 310 - 0 310 85473 310 chain 32507 chr3 198022430 + 43034235 43034655 MER57A1 433 - 9 433 80012 140 3 4 25 0 1 50 1 3 201 chain 46279 chr3 198022430 + 43069298 43069921 MER4B 649 - 21 649 61789 64 1 0 21 0 9 169 5 0 85 29 31 249 chain 72189 chr3 198022430 + 43082231 43083030 L1PA3long 6157 - 5 812 47380 143 0 8 656 chain 42120 chr3 198022430 + 43086314 43086923 LTR14B 630 - 0 620 66483 75 0 5 114 9 0 11 31 1 24 0 9 74 4 29 15 0 11 31 0 1 67 1 0 153 chain 557405 chr3 198022430 + 43106266 43112282 L1PA2 6032 + 5 6024 563 30 1 0 793 0 4 5192 chain 26049 chr3 198022430 + 43161094 43161387 AluYk4 311 - 20 311 99830 11 2 0 280 chain 4479 chr3 198022430 + 43162787 43162840 L1MB3 1562 - 213 266 201022 53 chain 89424 chr3 198022430 + 43208764 43209739 L1PA4 6152 + 5169 6144 39835 975 chain 13211 chr3 198022430 + 43215064 43215264 MER30 238 + 30 238 147423 43 1 2 33 5 15 67 4 1 47 chain 23334 chr3 198022430 + 43232769 43233072 MER1B 344 + 43 344 114005 224 11 8 49 0 1 19 chain 19774 chr3 198022430 + 43240245 43240660 LTR45C 530 + 0 412 127895 118 2 0 22 147 148 88 2 0 36 chain 9042 chr3 198022430 + 43266197 43266383 MER57E1 380 - 0 185 165368 95 61 60 30 chain 28254 chr3 198022430 + 43267134 43267431 AluYf4 310 - 13 310 92097 297 chain 10269 chr3 198022430 + 43267498 43267655 L1MA9 1812 - 487 642 159288 78 13 12 51 1 0 14 chain 17658 chr3 198022430 + 43269120 43269357 L1P3 4156 + 3905 4139 133810 202 2 0 7 2 1 24 chain 81745 chr3 198022430 + 43299796 43300758 LTR5_Hs 974 - 0 974 42875 109 1 0 31 9 16 412 1 7 399 chain 3971 chr3 198022430 + 43317532 43317580 MER102c 337 - 174 222 207830 48 chain 32031 chr3 198022430 + 43398191 43398662 L1PREC2 3366 + 2073 2548 80817 34 0 1 28 0 1 88 5 3 56 0 1 10 1 2 67 8 10 46 25 25 103 chain 285592 chr3 198022430 + 43422716 43427394 L1PB1 5432 + 1473 5422 14314 77 3 0 444 0 1 273 0 3 44 20 0 140 312 0 30 9 3 56 12 38 86 0 1 165 3 0 57 1 4 111 0 3 99 314 0 38 91 0 195 0 1 43 4 11 336 7 0 312 0 1 8 9 14 138 0 2 8 0 1 349 10 6 28 6 10 153 6 13 35 1 2 120 9 11 160 1 0 8 2 3 24 8 6 11 7 3 10 2 0 9 20 16 27 2 1 16 2 1 37 0 8 12 1 0 5 32 8 18 3 1 5 1 0 38 6 5 17 2 1 11 1 0 18 chain 3630 chr3 198022430 + 43440273 43440315 MIR 256 + 103 145 213148 42 chain 8266 chr3 198022430 + 43470225 43470457 Tigger4a 237 + 0 237 169588 27 10 0 9 0 16 9 88 90 29 3 0 57 chain 6080 chr3 198022430 + 43484936 43485035 LTR29 598 - 492 590 184572 12 6 8 29 3 0 49 chain 21649 chr3 198022430 + 43486372 43486636 AluY 311 + 39 304 121573 93 0 1 171 chain 26134 chr3 198022430 + 43498771 43499158 THE1D 372 - 0 366 99465 35 2 1 143 22 22 14 1 0 82 20 1 68 chain 21097 chr3 198022430 + 43500146 43500443 L1PA8 5853 - 0 291 123558 91 5 4 15 8 7 47 2 1 11 1 0 67 2 0 48 chain 117723 chr3 198022430 + 43503312 43505316 THE1B-int 1605 + 20 1590 31884 406 316 25 178 6 10 572 177 18 11 1 7 195 12 14 27 0 4 103 chain 7748 chr3 198022430 + 43513988 43514084 HY1 111 + 15 109 172610 66 2 0 28 chain 13778 chr3 198022430 + 43523720 43523884 MER4D1 891 + 721 884 145340 100 1 0 63 chain 28422 chr3 198022430 + 43526767 43527117 LTR17 781 + 389 773 91498 134 5 17 188 0 22 23 chain 137034 chr3 198022430 + 43527790 43529312 L1PA3long 6157 - 1491 3008 26632 308 0 4 1181 9 0 24 chain 136850 chr3 198022430 + 43529313 43530824 L1PA3long 6157 + 4648 6157 26670 1500 2 0 9 chain 12493 chr3 198022430 + 43533416 43533588 L1P2 5180 + 4 1071 150270 84 0 894 56 0 1 32 chain 103523 chr3 198022430 + 43533604 43534917 L1PA7 6471 + 5132 6469 35859 467 0 4 16 3 2 542 36 47 97 0 1 67 0 11 73 2 0 10 chain 53121 chr3 198022430 + 43549851 43550446 L1PA5 6144 + 5549 6144 56945 595 chain 31541 chr3 198022430 + 43550487 43550854 L1PA5 6144 + 5761 6128 81581 367 chain 67791 chr3 198022430 + 43559612 43560679 MER11B 1079 + 0 1074 49326 45 10 101 17 91 0 57 0 5 129 3 6 65 19 20 92 0 1 4 6 5 33 11 15 146 10 0 29 0 2 48 5 6 41 0 1 16 4 5 162 1 0 23 chain 3935 chr3 198022430 + 43588836 43588937 MLT1C 463 - 25 121 208339 8 1 0 10 8 3 12 22 23 40 chain 550375 chr3 198022430 + 43607314 43613339 L1PA2 6032 + 1 6031 1397 256 1 0 730 0 3 1404 1 0 1835 0 4 1633 5 0 7 0 5 153 chain 532171 chr3 198022430 + 43633112 43639255 L1PA5 6144 + 0 6135 3944 150 9 11 791 0 1 212 15 6 99 5 0 277 0 1 475 1 0 1009 1 0 796 0 2 1173 0 1 17 1 0 551 0 2 561 chain 4459 chr3 198022430 + 43643569 43643651 LTR16B1 483 + 282 367 201248 48 20 23 14 chain 31404 chr3 198022430 + 43665800 43666224 MSTA 426 + 0 426 81810 194 11 12 131 8 9 80 chain 85129 chr3 198022430 + 43669657 43670702 MER11C 1089 + 0 1063 41471 247 0 9 61 0 4 228 22 23 118 0 4 5 1 0 38 0 1 74 1 0 53 0 1 197 chain 23979 chr3 198022430 + 43680985 43681282 AluSc5 308 + 11 295 110452 107 0 1 48 14 0 128 chain 41217 chr3 198022430 + 43689793 43690649 MER41A 554 - 0 544 67627 52 3 4 157 1 4 102 11 7 43 312 0 175 chain 135746 chr3 198022430 + 43696681 43698482 LTR12C 1709 - 0 1709 26888 168 0 102 211 0 4 106 3 1 5 1 0 35 0 2 161 5 7 70 1 0 82 0 2 50 201 0 407 1 2 294 chain 17416 chr3 198022430 + 43697579 43697780 LTR12C 1709 - 687 887 98656 185 1 0 15 chain 371466 chr3 198022430 + 43702465 43707006 L1PA7 6471 + 1874 6451 11043 161 1 0 605 0 1 657 8 5 181 2 13 47 0 4 22 0 3 637 0 2 275 0 1 51 15 14 54 4 6 50 0 8 278 0 1 649 0 4 17 2 1 238 0 3 290 0 1 160 0 1 137 chain 62903 chr3 198022430 + 43709312 43710259 L1PB2 3958 - 121 1066 51487 46 28 31 11 10 9 61 2 1 7 0 3 39 0 3 8 1 0 73 1 0 93 4 0 14 2 0 60 5 1 16 0 3 44 7 5 25 0 4 147 4 3 206 1 0 32 chain 29489 chr3 198022430 + 43719799 43720236 LTR2 463 + 0 445 86673 55 0 3 151 3 0 12 0 5 108 35 0 8 14 52 51 chain 541116 chr3 198022430 + 43720446 43726575 L1PA4 6152 + 0 6143 2648 928 0 4 521 0 4 387 0 4 705 0 1 115 1 0 1748 0 2 1724 chain 5460 chr3 198022430 + 43734697 43734829 MER63A 208 + 0 151 190417 16 51 70 65 chain 3245 chr3 198022430 + 43770981 43771019 MIRc 230 - 126 164 220108 38 chain 22736 chr3 198022430 + 43788467 43788760 AluYk4 311 + 19 310 116893 113 13 11 167 chain 26516 chr3 198022430 + 43815999 43816307 AluYf4 310 + 0 307 97988 207 0 1 92 2 0 7 chain 3243 chr3 198022430 + 43819871 43819912 MLT1F2 592 + 64 106 220174 33 0 1 8 chain 5066 chr3 198022430 + 43840816 43840894 MER47A 366 - 275 352 194475 56 5 4 17 chain 443325 chr3 198022430 + 43842380 43847474 L1PA5 6144 - 2 5100 8944 794 0 3 997 0 4 351 0 3 793 1 2 248 0 1 814 0 1 961 9 0 126 chain 237544 chr3 198022430 + 43847531 43850597 L1PB1 5432 + 2028 5115 16904 333 21 22 42 6 0 74 0 1 494 0 1 32 9 12 271 0 1 267 3 0 151 16 12 211 5 4 116 10 24 407 0 13 112 4 0 75 4 5 23 4 0 81 15 22 269 1 2 10 chain 22620 chr3 198022430 + 43867040 43867359 L1PA16 3655 - 77 389 117489 72 13 5 63 0 3 145 3 1 23 chain 319888 chr3 198022430 + 43887217 43891126 L1PA8A 6298 + 2296 6290 12601 137 4 60 8 2 0 111 0 1 528 0 2 168 0 4 124 0 3 24 5 0 15 0 8 374 11 12 1261 1 0 86 3 4 147 0 2 116 2 1 78 0 2 175 0 6 126 0 6 47 0 1 269 0 1 87 chain 3008 chr3 198022430 + 43895417 43895919 LTR33A_ 513 + 1 462 224881 6 4 0 24 138 130 19 287 258 24 chain 23809 chr3 198022430 + 43917537 43917924 MLT2D 439 - 0 399 111424 45 0 7 12 3 9 45 2 1 57 0 6 37 21 23 102 2 0 19 28 22 14 chain 33727 chr3 198022430 + 43929663 43930138 L1MA2 4263 + 3610 4075 78049 53 1 0 146 3 0 143 12 13 91 10 3 16 chain 469385 chr3 198022430 + 43975940 43981494 L1PA7 6471 - 10 5568 8057 329 7 8 503 1 0 82 1 0 424 0 1 153 0 3 1191 0 3 21 12 0 196 0 8 640 6 10 254 3 0 605 3 4 209 0 1 329 1 0 584 chain 496709 chr3 198022430 + 43981518 43988004 L1PA4 6152 - 12 6141 7022 785 0 3 51 1 0 1097 0 2 1515 0 1 6 0 1 774 0 3 747 3 0 448 7 0 86 392 216 15 355 161 63 10 24 131 chain 8273 chr3 198022430 + 43987042 43987133 L1PA4 6152 - 6060 6151 169552 91 chain 36975 chr3 198022430 + 44136874 44137302 L1PA6 6164 - 13 442 73547 147 1 2 26 1 0 143 0 1 110 chain 29958 chr3 198022430 + 44177699 44178033 L1PA5 6144 - 3 338 84945 144 0 1 190 chain 247473 chr3 198022430 + 44189497 44192526 L1PA7 6471 - 5 3860 16376 335 1 0 145 0 4 69 0 784 168 0 3 151 0 4 125 0 12 651 0 1 5 0 3 85 0 1 20 0 1 140 0 3 150 1 0 4 4 8 38 2 6 38 0 4 48 0 5 154 1 0 58 4 0 6 3 7 126 0 4 27 0 2 181 7 11 238 14 0 30 chain 79521 chr3 198022430 + 44213841 44215077 LTR12D 1347 - 3 1347 43815 262 1 0 31 6 5 23 8 4 172 1 0 88 1 0 20 0 66 98 9 40 202 97 26 26 41 124 12 7 14 131 chain 5105 chr3 198022430 + 44224077 44224137 LTR40a 516 - 14 74 194042 60 chain 3736 chr3 198022430 + 44270444 44270494 MER53 195 + 121 171 211369 50 chain 34473 chr3 198022430 + 44302844 44303406 L1PREC2 3366 - 366 892 76952 29 35 20 29 2 0 16 4 1 5 2 0 8 35 27 11 3 0 4 1 0 100 2 0 276 chain 21461 chr3 198022430 + 44306781 44307069 AluSg7 307 + 10 293 122294 69 0 3 42 5 6 156 9 0 7 chain 4053 chr3 198022430 + 44333384 44333481 MER119 576 - 0 128 206604 20 11 43 17 15 14 34 chain 75276 chr3 198022430 + 44340782 44341604 L1PA3long 6157 + 5335 6157 45881 822 chain 7917 chr3 198022430 + 44348253 44348381 MER85 139 - 0 139 171541 12 20 31 96 chain 22574 chr3 198022430 + 44348536 44348803 AluSp 311 - 34 301 117696 267 chain 30921 chr3 198022430 + 44349750 44350101 L1PA5 6144 - 129 480 82646 351 chain 19467 chr3 198022430 + 44359667 44359917 AluSx1 309 + 10 256 128761 40 12 8 198 chain 236033 chr3 198022430 + 44388140 44391518 HERVH-int 3825 - 306 3825 16977 248 29 28 228 1 0 40 165 0 93 35 37 20 1 0 162 0 3 150 1 0 363 0 4 47 5 10 368 0 27 84 1 0 4 0 1 147 0 2 24 15 5 195 15 0 42 15 18 215 0 17 159 1 0 13 82 356 65 26 25 319 chain 5903 chr3 198022430 + 44446265 44446344 MADE1 96 + 0 96 186157 37 0 18 10 1 0 31 chain 20376 chr3 198022430 + 44459613 44459959 THE1B 368 + 0 368 125971 97 27 38 41 0 2 7 17 8 21 17 29 63 0 6 56 chain 39978 chr3 198022430 + 44478415 44479543 MER41A 554 - 16 540 69349 64 0 5 25 0 4 58 4 5 8 0 3 312 617 0 40 chain 17766 chr3 198022430 + 44478889 44479502 MER41C 542 - 0 542 133527 29 5 6 110 359 286 64 0 1 46 chain 33828 chr3 198022430 + 44480118 44480502 L1PA3long 6157 + 5757 6146 77896 258 1 0 119 0 6 6 chain 22969 chr3 198022430 + 44482704 44483020 MER41B 635 - 310 635 115759 79 3 1 47 1 11 45 0 1 12 0 1 84 2 1 43 chain 22809 chr3 198022430 + 44484930 44485262 AluY 311 + 0 297 116532 75 36 0 57 7 8 157 chain 2750 chr3 198022430 + 44534354 44534400 MLT1A 405 + 0 51 229482 14 5 10 27 chain 11801 chr3 198022430 + 44549109 44549252 LTR72 515 - 372 515 153038 143 chain 7814 chr3 198022430 + 44563347 44563465 PrimLTR79 487 + 36 174 172226 14 0 16 4 1 0 15 0 4 65 3 4 16 chain 37737 chr3 198022430 + 44564099 44564549 LTR7C 471 + 0 449 72504 277 2 1 171 chain 46928 chr3 198022430 + 44575980 44576551 LTR14C 587 + 0 585 61284 154 0 1 276 5 13 5 0 1 103 3 7 25 chain 3506 chr3 198022430 + 44581508 44581547 MER3 215 + 51 90 215262 39 chain 3071 chr3 198022430 + 44585149 44585367 LTR12_ 688 - 207 577 223553 27 168 320 23 chain 401625 chr3 198022430 + 44587058 44591942 HERV9-int 5642 - 830 5642 10040 98 10 7 1034 0 10 908 0 1 666 1 0 57 0 1 337 0 10 128 1 5 217 5 0 222 100 9 23 1 0 32 4 5 33 0 1 64 0 1 94 6 4 126 24 18 101 1 0 59 8 15 41 0 1 79 0 1 404 chain 6108 chr3 198022430 + 44592292 44592401 LTR12 884 - 547 656 184358 18 25 0 24 0 25 42 chain 2663 chr3 198022430 + 44594820 44594878 MIR 256 - 108 167 230872 18 17 18 23 chain 24773 chr3 198022430 + 44715063 44715367 THE1B 368 - 65 368 106046 135 1 0 168 chain 115359 chr3 198022430 + 44734716 44735994 L1PA3long 6157 - 853 2148 32660 548 2 0 295 0 15 88 0 4 345 chain 75110 chr3 198022430 + 44735994 44736838 L1PA3long 6157 + 5313 6157 45923 844 chain 65061 chr3 198022430 + 44738462 44739858 L1PB1 5432 + 4369 5422 50545 71 10 6 37 1 2 22 7 8 106 3 0 84 4 6 86 0 12 32 0 1 195 1 2 32 1 6 26 1 2 8 2 1 20 1 0 12 1 0 10 9 4 8 2 0 52 2 1 15 1 0 44 1 0 16 23 12 18 355 22 22 1 0 21 1 0 13 2 1 17 chain 27405 chr3 198022430 + 44739432 44739748 AluY 311 + 0 310 94950 122 0 1 4 7 0 183 chain 29184 chr3 198022430 + 44742928 44743238 AluYb8 318 - 8 318 88128 310 chain 21342 chr3 198022430 + 44748264 44748488 AluYa5 310 - 5 229 122715 224 chain 6421 chr3 198022430 + 44789700 44789798 MER44A 345 + 80 190 181856 21 0 10 7 8 0 55 0 10 7 chain 55993 chr3 198022430 + 44800657 44801775 Tigger1 2417 - 945 1794 55125 21 0 1 66 6 4 75 0 1 5 2 0 40 1 0 122 6 10 10 1 0 75 0 3 16 304 0 54 0 3 42 24 51 103 9 11 136 chain 15372 chr3 198022430 + 44815267 44815644 MER61D 487 - 0 374 140288 15 1 0 17 7 6 39 22 20 12 48 58 6 1 0 12 12 8 12 36 0 7 0 32 130 chain 6653 chr3 198022430 + 44819721 44819806 MLT1D 503 - 0 85 180063 85 chain 4354 chr3 198022430 + 44820504 44820840 L1MD3 1191 - 803 1106 202530 14 43 30 27 212 192 40 chain 23891 chr3 198022430 + 44827439 44827723 AluY 311 + 9 298 110950 44 2 6 73 0 1 165 chain 354429 chr3 198022430 + 44857738 44861820 L1PA6 6164 - 3 4090 11493 8 2 0 160 1 3 185 0 1 314 0 2 90 1 0 26 5 4 782 1 0 1341 1 0 54 0 1 370 0 1 42 2 1 435 7 8 116 0 4 139 chain 150470 chr3 198022430 + 44861855 44863569 SVA_D 2077 - 12 1979 24542 664 9 0 5 0 8 48 1 0 5 0 78 199 10 147 20 0 40 753 chain 169478 chr3 198022430 + 44863581 44865635 L1P2 5180 - 3110 5177 22117 218 1 2 500 1 0 219 0 1 332 0 15 268 1 0 266 3 2 47 1 0 36 0 1 13 6 5 142 chain 32414 chr3 198022430 + 44878210 44878656 LOR1a 498 - 46 498 80182 53 16 19 62 0 4 20 0 1 4 1 0 95 1 0 194 chain 173071 chr3 198022430 + 44898490 44900870 HERVH-int 3825 - 0 2220 21701 13 1 2 190 0 1 603 1 0 37 6 0 5 158 0 92 9 13 421 1 0 104 7 8 46 1 0 5 5 6 389 2 1 284 chain 4950 chr3 198022430 + 44910108 44910174 MLT1A 405 + 289 354 195704 48 1 0 17 chain 5562 chr3 198022430 + 44922068 44922197 MER68 562 - 109 243 189458 28 36 37 18 3 7 44 chain 19064 chr3 198022430 + 44931355 44931723 THE1D 372 - 0 362 129925 14 20 12 7 0 1 98 58 62 6 0 6 100 19 10 46 chain 24942 chr3 198022430 + 44938487 44938794 AluSg7 307 - 1 306 105099 94 15 13 198 chain 11630 chr3 198022430 + 44939192 44939459 Charlie1 1172 - 73 351 153777 28 2 1 12 1 0 4 18 24 24 2 0 6 41 32 94 0 15 23 1 4 11 chain 10201 chr3 198022430 + 44977121 44977248 LTR56 451 + 189 326 159616 100 0 10 27 chain 22783 chr3 198022430 + 44977251 44977592 L1PA14 3548 + 3155 3482 116666 34 1 0 31 2 1 111 1 0 10 0 1 36 4 2 12 1 0 5 1 0 21 1 0 36 6 0 10 1 0 17 chain 18320 chr3 198022430 + 45018311 45018522 AluSc 308 + 18 232 132019 58 0 6 49 3 0 101 chain 96875 chr3 198022430 + 45026813 45028153 LTR12C 1709 - 0 1709 37592 84 1 0 16 0 1 145 2 0 235 11 4 18 1 2 86 3 1 5 0 159 40 0 200 201 45 42 12 14 5 54 18 61 43 4 13 9 1 0 33 19 0 240 chain 29172 chr3 198022430 + 45047892 45048207 AluYb8 318 - 3 318 88187 315 chain 11301 chr3 198022430 + 45080158 45080308 L1PA8 5853 - 0 148 155056 93 1 0 19 2 1 35 chain 49689 chr3 198022430 + 45095221 45095905 LTR8 732 - 0 732 59243 195 14 11 18 0 5 155 16 43 63 0 2 76 0 7 118 0 9 10 0 1 19 chain 10733 chr3 198022430 + 45103470 45103610 MER41A 554 + 413 554 157266 121 1 2 18 chain 6833 chr3 198022430 + 45104137 45104231 MER41B 635 + 511 610 178709 38 7 12 49 chain 6424 chr3 198022430 + 45109934 45110102 L1PB1 5432 + 5264 5411 181828 17 2 1 14 25 13 18 8 5 14 2 0 24 2 1 20 1 0 13 1 0 7 chain 125689 chr3 198022430 + 45118201 45119783 THE1A-int 1579 + 0 1579 29192 15 14 15 330 2 3 217 0 1 75 2 1 459 5 0 463 chain 22513 chr3 198022430 + 45146273 45146546 AluSp 311 + 10 288 117970 139 0 5 134 chain 24155 chr3 198022430 + 45184416 45184711 AluSq2 311 + 4 296 109452 285 3 0 7 chain 11225 chr3 198022430 + 45204007 45204156 LTR49 580 + 0 149 155326 74 1 2 59 1 0 14 chain 20289 chr3 198022430 + 45218982 45219253 AluY 311 + 28 305 126254 104 16 17 87 1 6 63 chain 5148 chr3 198022430 + 45246927 45246999 LTR47A 437 - 9 82 193566 22 4 5 46 chain 29507 chr3 198022430 + 45279954 45280445 MER1A 529 + 0 529 86609 15 20 48 21 51 46 35 4 10 187 8 13 81 11 15 58 chain 5263 chr3 198022430 + 45333600 45333683 MLT1B 390 - 0 90 192380 30 3 10 50 chain 32416 chr3 198022430 + 45341569 45342130 MLT2A1 477 - 0 477 80175 50 7 0 6 3 0 10 3 0 8 74 0 40 4 1 38 1 0 124 4 5 22 1 5 10 1 0 6 9 10 87 4 6 49 chain 12625 chr3 198022430 + 45348650 45348921 LTR12C 1709 + 932 1086 149751 114 117 0 40 chain 753 chr3 198022430 + 45348806 45348839 LTR12C 1709 + 650 683 193511 33 chain 3347 chr3 198022430 + 45348921 45349032 LTR12C 1709 + 963 1037 154227 41 43 6 27 chain 29693 chr3 198022430 + 45354922 45355322 LTR7 482 - 0 482 85854 158 0 10 6 0 3 20 1 0 21 8 40 109 9 47 68 chain 3024 chr3 198022430 + 45358332 45358366 MER63A 208 - 80 114 224572 34 chain 3562 chr3 198022430 + 45386444 45386564 MLT1G 592 + 432 555 214283 34 66 69 20 chain 174811 chr3 198022430 + 45398346 45402772 L1PA16 3655 - 52 3071 21488 10 18 0 16 3 0 27 0 11 114 6 7 117 14 11 22 5 6 56 3 2 44 1 0 45 368 24 33 2 0 151 0 26 6 1 2 8 0 6 124 289 0 7 4 1 9 0 7 5 2 1 31 1 0 69 317 0 124 1 2 372 0 4 97 1 0 9 5 1 39 13 20 94 4 7 41 9 8 147 8 9 182 0 1 106 1 0 54 2 3 104 820 332 75 78 79 71 8 7 33 chain 3867 chr3 198022430 + 45407463 45407506 MIR 256 + 5 48 209342 43 chain 21532 chr3 198022430 + 45412516 45412832 L1M1 2793 + 1088 1396 122035 90 1 0 70 4 0 14 0 1 4 34 29 94 0 1 5 chain 50879 chr3 198022430 + 45415149 45415738 LTR10C 591 + 0 591 58381 508 0 2 81 chain 399395 chr3 198022430 + 45415886 45422786 L1PB1 5432 - 12 5373 10124 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 21 2 1 7 12 0 17 312 0 44 19 17 50 20 14 10 2 1 7 1 0 23 7 0 7 0 7 48 16 16 337 2 3 47 0 1 28 2 0 87 0 1 696 519 0 110 14 0 165 370 24 224 13 5 7 0 1 300 0 22 137 18 17 707 5 7 484 8 9 100 332 3 97 25 9 176 2 4 165 0 1 303 0 3 173 1 21 157 4 0 5 12 0 232 25 24 62 0 1 23 chain 44544 chr3 198022430 + 45417817 45418330 MER9a2 513 - 0 513 63534 513 chain 20891 chr3 198022430 + 45432703 45432994 AluSx3 311 + 8 301 124317 124 0 1 116 29 30 22 chain 15783 chr3 198022430 + 45441145 45441433 L1PB1 5432 - 5 274 139008 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 9 13 10 19 10 0 12 3 0 16 1 0 17 0 9 17 1 0 16 2 1 53 2 0 9 chain 2931 chr3 198022430 + 45458231 45458264 MER3 215 - 135 168 226491 33 chain 11896 chr3 198022430 + 45465699 45465902 MER47A 366 - 35 229 152622 13 1 0 18 1 0 31 15 20 84 12 0 28 chain 29127 chr3 198022430 + 45478004 45478313 AluYb8 318 + 0 310 88425 282 0 1 27 chain 5738 chr3 198022430 + 45484484 45484581 MER20 218 - 87 174 187751 41 16 6 40 chain 27731 chr3 198022430 + 45485873 45486177 AluYa5 310 + 0 303 93933 109 2 1 193 chain 43783 chr3 198022430 + 45489929 45490445 MER9a2 513 - 0 513 64473 56 5 1 442 0 1 13 chain 2901 chr3 198022430 + 45524511 45524541 MLT1J 494 - 355 385 227032 30 chain 4724 chr3 198022430 + 45602432 45602493 MER58A 224 + 131 192 198235 61 chain 8960 chr3 198022430 + 45610858 45610971 LTR8 732 + 42 159 165827 19 0 4 94 chain 40221 chr3 198022430 + 45612318 45612781 LTR2 463 + 0 463 69000 463 chain 14754 chr3 198022430 + 45629735 45630138 MER4B 649 - 7 410 142084 5 1 0 4 1 0 47 5 6 18 1 0 53 33 0 8 26 58 13 24 8 24 72 91 68 chain 11365 chr3 198022430 + 45633930 45634171 Charlie3 2679 - 2422 2661 154837 50 44 42 89 19 20 16 7 6 16 chain 25877 chr3 198022430 + 45665917 45666239 AluY 311 + 0 307 100538 95 0 1 34 16 0 177 chain 8288 chr3 198022430 + 45671300 45671400 LTR1 825 + 720 821 169464 15 0 1 85 chain 108152 chr3 198022430 + 45691832 45693129 L1PA6 6164 - 3 1306 34671 7 2 0 151 3 1 20 0 1 154 0 1 120 1 0 179 0 1 209 1 5 390 0 4 60 chain 22591 chr3 198022430 + 45717848 45718136 L1PA8A 6298 - 6 297 117626 13 8 17 11 7 0 65 0 1 184 chain 47655 chr3 198022430 + 45727312 45727867 LTR6B 557 + 0 557 60733 48 1 0 92 0 1 218 0 1 41 2 0 92 0 1 6 0 1 33 0 1 22 chain 4702 chr3 198022430 + 45730514 45730563 tRNA-Arg-CGY_ 50 - 1 50 198518 49 chain 7831 chr3 198022430 + 45740694 45740799 L1PA2 6032 + 5939 6031 172121 85 13 0 7 chain 30305 chr3 198022430 + 45768358 45768676 AluYb8 318 - 0 318 83900 318 chain 20882 chr3 198022430 + 45790562 45790912 THE1B 368 - 0 368 124346 74 1 0 95 4 0 6 31 24 34 14 29 38 9 24 44 chain 29666 chr3 198022430 + 45826722 45827102 MLT2A1 477 + 0 385 85976 142 8 9 13 5 9 212 chain 3333 chr3 198022430 + 45834255 45834354 MER63A 208 + 95 195 218361 29 47 48 23 chain 7177 chr3 198022430 + 45856133 45856218 BC200 147 + 42 127 176223 85 chain 80017 chr3 198022430 + 45896627 45897608 L1PA10 4194 + 3158 4150 43582 445 0 9 184 0 4 282 1 2 32 3 0 34 chain 5376 chr3 198022430 + 45907214 45907283 L1ME1 1623 + 1243 1312 191237 69 chain 8261 chr3 198022430 + 45909578 45909669 L1PA5 6144 + 6047 6138 169620 91 chain 7312 chr3 198022430 + 45910390 45910490 MER5A1 166 + 38 129 175356 8 9 0 83 chain 9205 chr3 198022430 + 45920124 45920239 L1MC1 2226 + 1278 1393 164530 115 chain 13733 chr3 198022430 + 45968553 45968760 MER30 238 + 0 238 145496 16 0 18 72 17 27 63 6 9 33 chain 23531 chr3 198022430 + 46039148 46039429 AluSp 311 + 0 277 112953 35 7 3 239 chain 7570 chr3 198022430 + 46039465 46039610 MER21A 919 - 742 908 173734 19 3 2 19 0 3 13 30 49 61 chain 4957 chr3 198022430 + 46041848 46041934 MER50 708 + 7 95 195608 35 17 19 34 chain 22066 chr3 198022430 + 46050272 46050583 AluY 311 + 1 296 119935 125 9 0 47 26 19 104 chain 7912 chr3 198022430 + 46052132 46052308 L1MB2 1706 - 20 188 171567 74 69 61 33 chain 9096 chr3 198022430 + 46063821 46063942 MER4D1 891 - 441 562 165091 21 1 0 14 1 0 40 0 2 44 chain 33877 chr3 198022430 + 46087645 46088073 LTR3A 482 - 40 482 77815 61 5 6 112 2 0 8 0 1 47 0 14 193 chain 35308 chr3 198022430 + 46095525 46095966 LTR3A 482 - 28 482 75785 51 1 0 22 0 1 122 2 0 51 0 14 166 0 1 26 chain 21560 chr3 198022430 + 46096065 46096335 LOR1b 457 - 0 269 121923 254 1 0 15 chain 7297 chr3 198022430 + 46119165 46119269 LTR56 451 + 214 320 175465 75 5 7 24 chain 4083 chr3 198022430 + 46131603 46131683 MLT1F 544 - 48 115 206161 4 0 1 20 0 5 29 19 0 8 chain 35207 chr3 198022430 + 46152552 46153007 LTR71A 459 - 0 459 75912 12 0 2 177 0 1 60 5 6 201 chain 34366 chr3 198022430 + 46159756 46160164 LTR71A 459 - 51 459 77112 398 1 0 4 0 1 5 chain 3793 chr3 198022430 + 46164705 46164745 MLT2A2 560 + 520 560 210494 40 chain 28043 chr3 198022430 + 46165814 46166194 HSMAR2 1300 - 413 811 92845 21 1 0 103 3 11 104 3 1 44 0 13 101 chain 60872 chr3 198022430 + 46181788 46182449 L1PA3long 6157 - 410 1071 52400 661 chain 406240 chr3 198022430 + 46189839 46194270 L1PA3long 6157 + 1701 6147 9905 615 0 14 846 0 1 1116 0 2 1600 1 0 101 2 1 150 chain 5477 chr3 198022430 + 46198339 46198399 L1P1 4361 - 2550 2610 190239 60 chain 19026 chr3 198022430 + 46209916 46210217 L1PREC2 3366 - 2896 3186 130048 70 2 1 141 3 1 12 1 0 13 7 5 25 7 2 20 chain 12090 chr3 198022430 + 46214846 46215036 L1MA9 1812 - 649 838 151836 48 1 0 24 4 5 92 9 8 12 chain 340778 chr3 198022430 + 46215674 46219514 L1PA4 6152 - 1 5284 11881 338 0 1 709 0 1 381 2 1441 721 0 1 106 0 1 1583 chain 25725 chr3 198022430 + 46223526 46223795 AluYa5 310 - 8 277 101193 269 chain 4562 chr3 198022430 + 46226688 46226980 L1MB7 1623 - 260 506 200082 20 128 105 12 3 0 4 1 0 8 49 36 12 13 7 42 chain 3055 chr3 198022430 + 46233969 46234005 MIR 256 - 27 63 223899 36 chain 3036 chr3 198022430 + 46248624 46248660 MER63A 208 + 172 208 224283 36 chain 3433 chr3 198022430 + 46251415 46251453 MER5A 189 + 0 38 216522 38 chain 36755 chr3 198022430 + 46285862 46286311 LTR7 482 - 0 482 73869 49 13 14 35 0 2 87 0 31 68 1 0 196 chain 40387 chr3 198022430 + 46287765 46288216 LTR7 482 - 0 482 68759 187 0 31 264 chain 297211 chr3 198022430 + 46289491 46293096 HERVH-int 3825 - 0 3825 13571 495 0 210 39 9 11 1045 0 10 105 0 13 181 13 37 237 0 1 558 0 3 101 1 0 52 5 4 24 2 1 42 0 37 15 70 0 24 1 0 10 1 0 38 5 0 532 chain 36930 chr3 198022430 + 46293111 46293556 LTR7 482 - 13 482 73613 174 1 32 37 14 7 219 chain 102843 chr3 198022430 + 46295996 46297601 L1PB1 5432 - 9 1667 36041 5 1 0 14 1 0 34 1 0 24 2 0 4 2 0 10 9 6 18 16 6 6 2 0 16 2 1 43 18 16 42 28 22 12 1 0 10 1 0 20 18 100 150 11 12 10 0 2 34 5 9 24 4 5 140 3 0 558 6 0 52 0 2 47 6 7 35 15 16 85 0 1 60 chain 33649 chr3 198022430 + 46301741 46302137 THE1B-int 1605 - 0 397 78171 9 0 1 387 chain 254128 chr3 198022430 + 46314575 46317557 L1PA7 6471 + 3477 6466 16025 26 1 0 41 0 4 474 0 1 280 0 2 1294 4 5 10 0 3 842 3 0 7 chain 21135 chr3 198022430 + 46319648 46319913 AluSp 311 + 22 303 123427 99 5 21 161 chain 21976 chr3 198022430 + 46358398 46358738 THE1B 368 + 0 363 120330 42 0 6 7 0 9 105 1 0 29 35 45 42 8 7 71 chain 31706 chr3 198022430 + 46367446 46367865 LTR3A 482 + 0 440 81320 156 11 19 18 0 14 71 2 1 161 chain 4455 chr3 198022430 + 46368110 46368184 HERVK3-int 3053 + 136 196 201295 13 14 0 47 chain 11436 chr3 198022430 + 46377102 46377250 HERVK22-int 3844 + 1357 1572 154545 130 0 67 18 chain 17308 chr3 198022430 + 46382157 46382636 L1PB1 5432 + 5029 5414 134767 50 0 4 20 79 11 26 0 3 4 5 0 10 6 2 9 2 0 46 12 11 11 1 0 43 2 1 12 71 55 23 1 0 22 5 4 8 1 0 10 chain 42499 chr3 198022430 + 46388600 46389110 MER9a2 513 - 0 513 66012 447 5 8 58 chain 30460 chr3 198022430 + 46420516 46420841 L1PA2 6032 - 5 330 83510 325 chain 12216 chr3 198022430 + 46433676 46433829 HERVH-int 3825 + 2123 2276 151360 129 1 0 4 0 1 19 chain 24777 chr3 198022430 + 46456019 46456304 L1PA4 6152 - 9 312 106016 130 0 7 10 0 11 145 chain 36573 chr3 198022430 + 46468033 46468502 LTR3A 482 + 2 482 74135 191 0 14 53 14 12 135 1 0 75 chain 8362 chr3 198022430 + 46470772 46470884 LTR17 781 - 28 184 169066 12 1 45 99 chain 28999 chr3 198022430 + 46472245 46472596 L1PA6 6164 - 12 365 88985 137 11 13 203 chain 78903 chr3 198022430 + 46473038 46474049 MER11A 1151 + 6 1151 44109 81 0 91 49 0 4 63 4 0 32 0 2 115 0 1 94 0 1 145 10 11 50 0 4 56 21 54 262 0 1 29 chain 37399 chr3 198022430 + 46474654 46475121 LTR3A 482 + 2 482 72953 24 0 1 166 0 14 51 2 0 224 chain 9321 chr3 198022430 + 46524403 46524647 MER63C 923 - 485 714 163955 30 6 0 23 4 0 47 94 89 40 chain 46224 chr3 198022430 + 46527346 46527971 LTR71B 605 + 0 603 61828 134 4 0 214 40 22 233 chain 158958 chr3 198022430 + 46535391 46537171 SVA_D 2077 + 26 2062 23470 5 3 0 185 1 0 668 0 183 36 0 78 32 1 0 127 0 1 47 0 1 4 10 8 661 chain 30427 chr3 198022430 + 46549806 46550124 AluYb8 318 - 0 318 83616 318 chain 13837 chr3 198022430 + 46551027 46551221 MER83 447 + 252 447 145107 60 1 0 87 0 1 8 10 11 28 chain 14538 chr3 198022430 + 46574961 46575136 MER47A 366 - 48 223 142774 175 chain 33279 chr3 198022430 + 46575414 46575867 L1PA8 5853 - 0 448 78756 93 1 0 19 2 1 44 1 0 3 1 0 30 0 1 38 1 2 14 2 0 20 1 0 24 1 0 32 11 12 115 chain 5565 chr3 198022430 + 46577373 46577443 MIR 256 - 73 143 189427 70 chain 35167 chr3 198022430 + 46598539 46598986 LTR7 482 + 0 482 75956 196 1 0 29 0 1 4 0 31 123 1 3 32 12 14 49 chain 128836 chr3 198022430 + 46609417 46611672 L1MA1 4479 + 2284 4147 28352 140 0 1 4 8 7 115 0 1 52 3 0 9 9 5 38 1 0 12 1 0 90 19 17 29 1 0 62 2 0 72 2 1 19 1 0 27 3 1 119 0 2 43 9 7 21 9 0 39 322 0 34 1 0 12 5 0 48 5 0 78 3 0 100 2 4 26 2 0 61 1 2 101 0 1 31 1 0 24 2 0 16 6 5 11 1 0 55 1 0 20 2 0 13 1 0 76 50 31 112 1 0 29 12 10 25 1 0 5 chain 19938 chr3 198022430 + 46632654 46632974 L1PBa 3878 + 3492 3800 127337 174 0 1 50 2 1 20 2 0 12 1 0 6 11 6 10 1 0 5 6 4 12 1 0 7 chain 16064 chr3 198022430 + 46634177 46634508 L1PB1 5432 + 5114 5420 138166 24 1 0 9 16 11 9 2 0 53 2 1 15 1 0 45 1 0 15 18 12 16 27 22 24 1 0 21 1 0 13 1 0 16 chain 12305 chr3 198022430 + 46635497 46635652 L1PB 1623 + 949 1100 150991 13 4 0 138 chain 20119 chr3 198022430 + 46658254 46658654 L1PB3 3668 - 222 607 126772 53 8 7 54 4 3 38 1 0 53 104 92 85 chain 5184 chr3 198022430 + 46681225 46681288 L1M4c 1769 - 654 717 193198 63 chain 26013 chr3 198022430 + 46697380 46697795 L1PB2 3958 + 3410 3811 99966 27 0 2 11 6 1 94 35 31 41 1 0 11 7 5 48 2 1 71 2 0 22 1 0 36 chain 33475 chr3 198022430 + 46773741 46774222 L1PA8 5853 - 0 475 78451 14 0 1 42 2 3 33 1 0 19 2 1 50 1 0 7 5 4 70 10 7 38 1 0 43 0 1 71 3 1 57 0 1 12 chain 3371 chr3 198022430 + 46776975 46777012 U6 107 - 2 39 217641 37 chain 385367 chr3 198022430 + 46813378 46817645 L1PA3long 6157 - 0 4254 10593 138 0 7 562 9 0 2760 1 0 133 0 1 348 0 2 106 16 3 194 chain 567504 chr3 198022430 + 46824595 46830628 L1HS 6032 - 0 6032 58 860 1 0 5172 chain 466193 chr3 198022430 + 46832006 46837561 L1PA7 6471 + 869 6470 8180 39 0 3 639 0 1 47 0 1 206 2 1 58 0 1 585 1 0 138 2 1 51 10 11 251 0 2 432 1 0 17 2 1 257 0 1 31 0 29 164 1 0 255 2 3 25 0 1 154 2 0 20 0 1 193 0 1 82 1 0 7 0 1 234 0 4 111 0 1 187 0 1 134 1 0 181 4 5 177 0 3 85 2 3 126 12 13 626 chain 9742 chr3 198022430 + 46838285 46838446 Tigger3b 1229 + 577 741 161884 109 29 31 15 0 1 8 chain 36109 chr3 198022430 + 46843354 46843775 L1P1 4361 - 20 438 74753 12 2 1 23 1 0 155 1 0 227 chain 203740 chr3 198022430 + 46854823 46857598 HERVL-int 5654 - 3185 5654 18942 142 0 1 251 3 8 945 1 0 455 0 1 521 0 1 14 316 0 15 12 15 100 chain 30409 chr3 198022430 + 46857657 46858044 MLT2A1 477 - 92 477 83668 188 2 3 20 9 6 168 chain 25173 chr3 198022430 + 46861397 46861738 THE1B 368 + 13 357 103894 27 0 5 58 6 7 58 1 0 4 3 2 119 1 0 64 chain 122861 chr3 198022430 + 46864146 46865717 THE1D-int 1627 - 50 1627 30093 55 1 0 191 9 17 31 0 1 30 5 7 781 0 1 38 14 10 378 1 0 37 chain 23620 chr3 198022430 + 46956122 46956410 AluSc 308 + 5 295 112469 6 0 2 282 chain 43381 chr3 198022430 + 46999066 46999994 PABL_A 660 + 0 578 64956 34 5 9 42 362 7 95 0 1 89 7 6 73 0 1 221 chain 6673 chr3 198022430 + 47000001 47000079 PABL_B 668 + 590 668 179885 78 chain 136569 chr3 198022430 + 47004913 47006441 SVA_D 2077 + 0 2062 26729 12 6 1 18 0 7 502 0 40 331 0 489 44 0 1 4 0 1 95 0 1 516 chain 12471 chr3 198022430 + 47011673 47011886 MER30 238 + 0 238 150371 16 9 20 72 4 0 10 2 20 15 1 7 7 6 0 71 chain 7482 chr3 198022430 + 47014862 47014998 AluSq2 311 + 161 297 174259 16 38 0 8 0 38 74 chain 94430 chr3 198022430 + 47067309 47068458 L1PA7 6471 + 5324 6467 38226 297 1 0 25 1 2 184 0 1 373 3 1 250 5 0 10 chain 18104 chr3 198022430 + 47068856 47069061 L1PA4 6152 + 5946 6151 132587 205 chain 33444 chr3 198022430 + 47078622 47078993 L1PA4 6152 - 1 371 78498 155 1 0 215 chain 23601 chr3 198022430 + 47089596 47089890 AluSc8 310 + 0 296 112584 7 1 0 125 0 3 161 chain 3635 chr3 198022430 + 47091590 47091634 L1MA4 2864 + 2766 2809 213045 7 1 0 36 chain 26636 chr3 198022430 + 47097226 47097531 AluY 311 + 9 311 97525 21 3 0 281 chain 22318 chr3 198022430 + 47102432 47102716 AluY 311 + 1 291 118834 31 0 1 20 5 9 66 1 2 161 chain 24876 chr3 198022430 + 47113520 47113805 AluY 311 + 4 290 105474 128 0 1 157 chain 16846 chr3 198022430 + 47128768 47129038 MER1B 344 - 5 295 135996 24 39 48 175 1 12 31 chain 4977 chr3 198022430 + 47134562 47134623 L1PA8 5853 - 0 60 195395 30 1 0 30 chain 25155 chr3 198022430 + 47199085 47199391 AluSp 311 + 4 310 103983 306 chain 5803 chr3 198022430 + 47223864 47223933 LTR23 429 + 156 225 187116 69 chain 5910 chr3 198022430 + 47225797 47225868 MLT1A 405 - 26 97 186088 71 chain 5961 chr3 198022430 + 47237473 47237544 LTR37A 408 + 67 138 185592 71 chain 4481 chr3 198022430 + 47237582 47237631 L1MB3 1562 - 389 438 201001 49 chain 2916 chr3 198022430 + 47246485 47246526 MER101-int 1169 + 651 689 226775 30 3 0 8 chain 17112 chr3 198022430 + 47248442 47249232 L1MA3 4352 + 3916 4351 135274 134 507 158 44 8 6 22 1 3 5 1 0 26 1 0 14 6 2 21 chain 4219 chr3 198022430 + 47259755 47259817 LTR37A 408 - 72 137 204308 41 6 9 15 chain 24540 chr3 198022430 + 47260541 47260849 AluSp 311 + 0 304 107308 124 7 4 141 2 1 34 chain 19654 chr3 198022430 + 47280458 47280706 AluSp 311 + 52 298 128238 99 3 1 146 chain 126672 chr3 198022430 + 47297210 47298640 SVA_D 2077 + 0 2070 28898 25 5 0 559 0 156 176 1 490 664 chain 76051 chr3 198022430 + 47301023 47301991 LTR5_Hs 974 + 0 974 45444 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 6938 chr3 198022430 + 47334003 47334113 L1MB3 1562 + 1122 1231 177907 69 14 13 27 chain 5368 chr3 198022430 + 47340907 47340981 MLT2C2 476 + 122 195 191337 68 1 0 5 chain 106476 chr3 198022430 + 47350264 47351468 SVA_C 1631 - 5 1569 35126 515 0 296 204 5 59 346 1 0 35 0 10 58 0 1 40 chain 37799 chr3 198022430 + 47400043 47403887 MSTB-int 1649 + 91 1649 72420 240 1 16 9 1 3 103 2298 901 141 16 20 13 225 0 39 704 20 36 1 0 17 chain 36747 chr3 198022430 + 47401609 47402080 LTR10F 562 - 8 556 73881 54 4 3 87 7 27 117 0 16 18 0 42 184 chain 2902 chr3 198022430 + 47407201 47407232 L1MB7 1623 - 204 235 227005 31 chain 5205 chr3 198022430 + 47418425 47418527 MLT1B 390 + 229 332 192979 43 27 28 32 chain 10967 chr3 198022430 + 47420402 47420587 L1MB3 1562 - 144 332 156328 21 37 41 5 1 0 121 chain 29794 chr3 198022430 + 47458105 47458415 AluYa5 310 - 0 310 85472 310 chain 21501 chr3 198022430 + 47473532 47473833 AluSc 308 + 10 308 122139 53 13 9 50 0 1 8 1 0 129 5 7 11 2 1 29 chain 5475 chr3 198022430 + 47479937 47480004 MER41A 554 + 398 466 190259 29 0 1 38 chain 24370 chr3 198022430 + 47495575 47495870 AluYf4 310 + 0 293 108264 263 6 4 26 chain 89924 chr3 198022430 + 47500910 47502017 MER11A 1151 - 5 1151 39678 178 0 1 49 0 1 58 5 38 4 0 1 126 5 8 293 0 1 18 0 4 38 0 2 30 0 2 88 0 1 6 2 0 23 20 12 164 chain 5733 chr3 198022430 + 47503625 47503705 L1MB3 1562 - 7 86 187811 32 2 1 46 chain 104428 chr3 198022430 + 47509243 47510431 L1PA5 6144 - 26 1221 35635 162 1 7 509 0 2 144 1 0 371 chain 28126 chr3 198022430 + 47513641 47513940 AluYb8 318 + 0 298 92551 132 1 0 166 chain 21724 chr3 198022430 + 47539132 47539429 AluSg7 307 + 0 289 121305 44 15 9 72 4 2 162 chain 74699 chr3 198022430 + 47547472 47548410 MER11C 1089 - 26 1065 46160 197 0 1 127 0 1 38 1 0 7 0 4 371 0 4 62 0 1 21 0 1 23 15 14 37 4 95 35 chain 33020 chr3 198022430 + 47575567 47575998 MER83 447 + 0 429 79183 399 0 1 5 10 7 17 chain 23257 chr3 198022430 + 47624349 47624646 AluSp 311 - 14 311 114406 155 1 2 127 1 0 13 chain 29002 chr3 198022430 + 47694435 47694746 AluYb8 318 - 8 318 88977 124 1 0 186 chain 28955 chr3 198022430 + 47722031 47722336 AluYa5 310 - 5 310 89195 305 chain 23721 chr3 198022430 + 47791300 47791590 AluY 311 + 10 301 111924 121 1 2 168 chain 24426 chr3 198022430 + 47795697 47795979 AluSc 308 - 15 297 107934 282 chain 24068 chr3 198022430 + 47830178 47830472 AluY 311 + 17 311 109935 106 1 0 9 0 1 178 chain 25570 chr3 198022430 + 47857843 47858144 AluSc 308 - 6 307 101872 301 chain 52641 chr3 198022430 + 47883558 47884208 LTR6A 649 + 0 649 57216 92 1 0 343 1 0 193 0 1 20 chain 24335 chr3 198022430 + 47904455 47904752 AluSp 311 - 3 298 108445 14 2 0 281 chain 141964 chr3 198022430 + 47928513 47930183 LTR12C 1709 + 0 1709 25829 309 0 1 4 1 0 155 0 1 97 7 4 266 1 0 114 0 41 119 1 0 6 2 0 107 0 4 481 chain 20436 chr3 198022430 + 47947898 47948153 AluSp 311 + 9 262 125790 10 1 0 24 1 0 219 chain 28829 chr3 198022430 + 47971653 47971952 AluYb8 318 + 0 299 89765 299 chain 7478 chr3 198022430 + 47982178 47982289 Charlie1a 1436 + 851 965 174288 38 11 14 62 chain 118178 chr3 198022430 + 47992805 47994129 SVA_D 2077 + 6 1816 31738 15 8 2 867 0 269 28 0 226 42 1 0 22 4 0 221 0 2 116 chain 18655 chr3 198022430 + 48034411 48034641 HSMAR2 1300 + 84 314 131072 230 chain 446705 chr3 198022430 + 48045633 48052107 HERVL-int 5654 + 5 5654 8860 93 6 7 587 11 1 7 0 15 130 1 3 21 14 20 61 306 9 163 1 0 598 0 2 22 4 0 140 17 54 424 0 1 100 1 0 814 283 0 100 5 0 491 0 4 39 0 4 49 0 4 119 0 9 9 5 11 155 1 2 150 330 5 395 8 9 144 6 5 246 1 0 46 0 3 129 0 5 16 2 0 4 0 1 184 0 3 36 chain 28144 chr3 198022430 + 48052113 48052530 MLT2A1 477 + 7 477 92484 8 0 4 29 0 2 87 0 1 24 41 50 77 0 1 4 1 0 89 10 48 27 1 0 19 chain 4349 chr3 198022430 + 48083230 48083299 L1MB8 1703 + 236 306 202597 17 6 7 46 chain 162565 chr3 198022430 + 48096735 48099108 SVA_F 1814 + 13 1803 22990 814 275 0 28 1 0 25 0 1 17 2 1 49 176 14 215 144 0 10 1 0 616 chain 11216 chr3 198022430 + 48097617 48097824 SVA_F 1814 + 845 1067 75259 10 1 0 31 0 2 10 1 0 50 3 18 101 chain 4172 chr3 198022430 + 48097949 48098068 SVA_F 1814 + 966 1084 131168 35 1 0 83 chain 2162 chr3 198022430 + 48098358 48098387 SVA_F 1814 + 815 844 152191 29 chain 3261 chr3 198022430 + 48098387 48098480 SVA_F 1814 + 1084 1177 131168 93 chain 118440 chr3 198022430 + 48102671 48104004 SVA_C 1631 + 18 1631 31634 6 0 1 12 1 4 193 1 2 270 0 270 209 0 4 14 0 1 627 chain 4021 chr3 198022430 + 48104734 48104780 L1MC2 1988 + 1207 1253 207062 46 chain 54865 chr3 198022430 + 48115301 48115959 L1PA5 6144 + 5489 6144 55788 56 1 0 116 7 6 456 2 1 20 chain 20144 chr3 198022430 + 48136273 48136524 7SLRNA 320 - 4 251 126694 204 4 0 43 chain 12428 chr3 198022430 + 48144359 48146568 L1PA17 2846 - 153 727 150542 36 6 8 18 1 0 30 1 0 9 2 0 9 5 6 37 0 1 6 1 0 12 1962 328 74 chain 1165 chr3 198022430 + 48155708 48155791 MER4D1 891 + 675 758 142533 83 chain 42017 chr3 198022430 + 48156137 48156634 LTR10C 591 + 0 589 66599 12 0 5 152 0 85 254 0 2 79 chain 1587 chr3 198022430 + 48156636 48156749 MER4D1 891 + 771 884 142533 113 chain 40184 chr3 198022430 + 48157361 48157871 LTR10D 510 + 2 509 69059 69 23 5 15 0 17 26 3 0 128 0 1 246 chain 24660 chr3 198022430 + 48158944 48159247 AluY 311 + 0 299 106669 123 3 0 10 1 0 166 chain 24091 chr3 198022430 + 48163315 48163616 AluSp 311 + 2 309 109792 135 9 16 77 1 0 79 chain 6661 chr3 198022430 + 48188635 48188715 MSTD 398 - 240 320 179977 80 chain 3776 chr3 198022430 + 48194890 48194993 L1MC4 1079 - 163 243 210717 13 48 25 42 chain 43436 chr3 198022430 + 48243013 48244531 MER41A 554 + 0 554 64888 150 964 0 404 chain 20074 chr3 198022430 + 48245410 48246384 PABL_A-int 1935 + 526 889 126903 23 1 0 47 8 0 8 5 10 31 673 63 126 0 3 52 chain 135878 chr3 198022430 + 48252381 48254590 SVA_F 1814 + 335 1814 26865 545 3 0 12 273 0 56 0 15 226 468 0 615 1 0 10 chain 5436 chr3 198022430 + 48252941 48253127 SVA_F 1814 + 893 1046 100991 42 0 2 10 1 15 18 49 0 66 chain 777 chr3 198022430 + 48253012 48253044 SVA_F 1814 + 916 948 114325 32 chain 3775 chr3 198022430 + 48253507 48253548 SVA_F 1814 + 664 705 210748 41 chain 5903 chr3 198022430 + 48253621 48253823 SVA_F 1814 + 1089 1274 100991 99 18 1 85 chain 3422 chr3 198022430 + 48253823 48253964 SVA_F 1814 + 1098 1267 114325 91 23 19 13 3 35 11 chain 4665 chr3 198022430 + 48258390 48258485 MER3 215 + 6 117 198905 44 22 38 29 chain 34630 chr3 198022430 + 48274786 48275237 LTR2 463 - 12 463 76718 40 1 0 30 0 1 95 4 0 124 5 9 152 chain 6045 chr3 198022430 + 48279628 48279709 LTR8 732 - 9 89 184849 47 1 0 33 chain 30376 chr3 198022430 + 48280633 48280949 AluYb9 318 + 0 316 83724 316 chain 3635 chr3 198022430 + 48282110 48282150 Charlie1b 519 + 446 486 213059 40 chain 24590 chr3 198022430 + 48294107 48294405 AluYf4 310 - 6 310 107045 247 4 10 47 chain 24161 chr3 198022430 + 48308890 48309173 AluSc 308 - 14 297 109419 283 chain 4168 chr3 198022430 + 48312911 48312961 LTR12C 1709 - 800 850 204995 50 chain 39168 chr3 198022430 + 48314284 48314788 LTR10G 522 + 20 522 70513 20 1 0 24 0 1 147 0 2 108 1 0 31 0 1 94 5 1 73 chain 35413 chr3 198022430 + 48319807 48320321 LTR10G 522 + 0 522 75667 16 0 4 20 1 0 24 0 1 58 1 0 56 14 14 157 19 16 80 0 1 5 0 3 19 11 15 33 chain 21965 chr3 198022430 + 48330559 48330848 AluSp 311 - 17 301 120377 141 0 3 8 10 7 82 6 1 42 chain 10184 chr3 198022430 + 48353708 48353839 L1MB5 1630 + 304 433 159698 74 2 0 55 chain 190190 chr3 198022430 + 48372791 48375148 HERV17-int 4347 - 278 4334 20028 22 1 0 48 0 1 30 1 0 233 0 1672 275 0 7 210 6 5 91 1 2 54 20 29 27 0 1 32 0 4 549 0 4 333 1 2 43 0 1 95 4 1 13 0 9 137 2 1 26 2 0 34 1 0 51 2 1 13 chain 64589 chr3 198022430 + 48524510 48525234 SVA_D 2077 - 2 1079 50752 635 1 352 50 0 2 38 chain 13333 chr3 198022430 + 48530348 48530561 MER30 238 + 0 238 146962 15 24 24 79 0 21 14 1 7 32 2 0 46 chain 53177 chr3 198022430 + 48531789 48532864 MER4E1 777 + 0 777 56905 167 2 1 163 1 20 85 0 1 17 0 1 5 1 0 4 11 9 47 33 24 7 2 0 28 308 0 173 0 2 7 1 3 13 chain 25234 chr3 198022430 + 48536236 48536534 AluSp 311 + 3 300 103568 122 1 0 175 chain 33919 chr3 198022430 + 48543866 48544294 LTR2 463 + 0 445 77741 300 8 24 31 19 20 70 chain 20499 chr3 198022430 + 48652662 48652900 AluSp 311 + 57 295 125632 238 chain 29108 chr3 198022430 + 48653035 48653339 AluYa5 310 + 1 305 88513 304 chain 43944 chr3 198022430 + 48655102 48656070 LTR10E 629 - 0 629 64271 6 1 0 30 0 1 4 29 27 208 0 1 5 1 0 50 14 3 7 321 0 117 4 6 149 7 0 15 chain 22342 chr3 198022430 + 48768395 48768704 AluSc8 310 + 10 295 118740 20 18 0 104 7 1 160 chain 7297 chr3 198022430 + 48770805 48770891 MER66B 489 - 15 101 175466 86 chain 168436 chr3 198022430 + 48770905 48772885 SVA_D 2077 + 0 2077 22232 896 14 105 8 0 1 26 0 2 48 0 2 14 0 79 201 0 8 11 8 0 117 78 0 559 chain 5076 chr3 198022430 + 48772248 48772326 SVA_D 2077 + 1166 1293 65400 12 0 49 66 chain 17348 chr3 198022430 + 48781639 48781861 AluY 311 + 74 294 134664 115 1 0 92 2 1 12 chain 2655 chr3 198022430 + 48793518 48793564 L1M 172 - 111 157 230943 13 1 0 8 3 4 21 chain 3175 chr3 198022430 + 48822150 48822205 MER6B 211 - 0 59 221427 13 9 13 33 chain 25485 chr3 198022430 + 48828439 48828746 AluSc5 308 + 0 307 102295 307 chain 3329 chr3 198022430 + 48867307 48867349 Tigger3b 1229 - 658 702 218433 8 0 2 34 chain 128812 chr3 198022430 + 48879414 48880842 L1PA3long 6157 - 1567 3002 28333 5 0 1 1161 0 4 155 0 2 107 chain 144992 chr3 198022430 + 48880842 48882415 L1PA3long 6157 + 4569 6149 25329 1443 0 7 130 chain 24803 chr3 198022430 + 48903291 48903584 AluSc5 308 + 10 296 105876 116 5 0 160 2 0 10 chain 22930 chr3 198022430 + 48912549 48912824 AluSg7 307 - 22 299 115965 153 0 1 78 0 1 44 chain 58231 chr3 198022430 + 48927095 48928580 LTR13A 966 + 0 964 53849 76 0 10 42 0 1 332 9 11 92 741 202 64 6 9 42 0 2 81 chain 18594 chr3 198022430 + 48954140 48954360 AluY 311 + 81 306 131242 52 4 7 140 0 2 24 chain 22106 chr3 198022430 + 48977385 48977653 AluY 311 + 11 297 119749 42 8 25 54 0 1 164 chain 7436 chr3 198022430 + 48977934 48978020 MER11B 1079 + 10 96 174544 86 chain 8687 chr3 198022430 + 48996984 48997077 AluY 311 + 30 123 167263 93 chain 21338 chr3 198022430 + 49005634 49005927 AluYa5 310 - 5 296 122725 204 50 48 39 chain 25291 chr3 198022430 + 49056912 49057206 AluSp 311 - 12 310 103265 212 0 4 82 chain 18690 chr3 198022430 + 49087487 49087693 AluYk11 308 + 0 293 130974 81 0 87 125 chain 22057 chr3 198022430 + 49101335 49101653 AluSp 311 - 12 301 119985 6 5 0 28 0 1 121 36 11 122 chain 3002 chr3 198022430 + 49102471 49102563 Charlie1b 519 - 173 271 225014 23 9 7 15 26 34 19 chain 20947 chr3 198022430 + 49106542 49106824 AluSg7 307 - 13 297 124123 18 9 11 110 17 17 128 chain 23380 chr3 198022430 + 49111733 49112013 AluY 311 + 10 289 113757 122 0 1 150 2 0 6 chain 23834 chr3 198022430 + 49122312 49122588 AluY 311 + 13 295 111286 27 0 6 249 chain 22157 chr3 198022430 + 49132726 49133020 AluSz6 309 + 4 300 119563 257 17 19 20 chain 76231 chr3 198022430 + 49177791 49178875 MER11A 1151 + 8 1145 45349 71 0 8 143 0 4 60 0 11 11 37 0 366 6 9 11 3 4 37 0 4 67 0 1 19 6 64 92 9 8 54 0 2 28 10 9 54 chain 90527 chr3 198022430 + 49179886 49180933 MER11C 1089 - 32 1089 39463 319 0 1 45 0 4 367 0 4 66 0 1 250 chain 14463 chr3 198022430 + 49194110 49194307 Tigger3b 1229 + 339 538 143010 41 0 1 23 0 3 36 7 5 90 chain 29034 chr3 198022430 + 49197759 49198070 AluYa5 310 - 1 310 88833 216 2 0 93 chain 106251 chr3 198022430 + 49219229 49220612 LTR12C 1709 - 0 1709 35194 74 19 17 390 0 4 106 1 158 22 1 0 84 0 118 267 6 5 75 8 51 42 14 19 10 1 3 184 0 1 79 chain 20626 chr3 198022430 + 49240276 49240585 AluYb8 318 - 3 304 125205 5 3 0 192 3 0 25 56 54 25 chain 14706 chr3 198022430 + 49242482 49242764 MER41B 635 - 127 415 142257 17 1 0 4 20 25 76 28 30 74 1 0 29 11 12 21 chain 25858 chr3 198022430 + 49250158 49250767 LTR12C 1709 - 257 1059 100613 11 0 1 38 231 365 22 1 42 39 0 16 80 0 1 64 15 0 7 2 17 99 chain 90787 chr3 198022430 + 49253955 49255083 L1PA6 6164 + 5032 6162 39362 145 1 2 135 0 6 120 1 0 177 0 1 63 6 6 249 1 3 54 17 10 159 chain 14387 chr3 198022430 + 49256112 49256283 LTR18B 584 - 413 584 143245 171 chain 39578 chr3 198022430 + 49256572 49257082 MER9a3 513 + 0 513 69924 18 0 2 91 0 1 144 4 3 174 0 1 79 chain 42072 chr3 198022430 + 49258324 49258943 LTR12 884 - 339 884 66527 24 0 19 122 2 0 21 90 0 221 1 0 12 0 1 100 1 0 25 chain 4639 chr3 198022430 + 49258511 49258562 LTR12 884 - 544 595 199201 51 chain 384386 chr3 198022430 + 49260620 49265945 HERV9-int 5642 - 0 5637 10634 19 6 0 20 28 5 14 1 0 59 2 1 26 3 1 36 319 14 218 1 0 514 2 1 506 0 3 217 302 0 36 7 942 69 1 0 471 0 2 173 0 8 1007 0 4 170 10 6 42 0 1 230 8 9 21 2 1 79 0 4 237 0 2 469 chain 54618 chr3 198022430 + 49265971 49266689 LTR12 884 - 0 884 55956 157 0 103 224 0 22 36 1 2 20 4 46 231 1 0 18 1 0 25 chain 370682 chr3 198022430 + 49266691 49271123 HERVK9-int 4720 + 258 4720 11070 52 9 12 210 0 1 38 0 4 130 0 1 580 0 1 4 0 10 110 0 1 1168 0 4 37 1 0 429 0 4 245 0 1 7 1 0 268 43 42 172 1 2 356 4 7 212 1 0 354 chain 31752 chr3 198022430 + 49271123 49271511 MER9a3 513 + 0 390 81246 18 0 2 90 0 1 145 1 0 134 chain 24286 chr3 198022430 + 49344213 49344504 AluSp 311 - 8 311 108729 275 0 12 16 chain 19174 chr3 198022430 + 49357677 49357897 AluSp 311 + 84 304 129601 220 chain 21229 chr3 198022430 + 49365872 49370577 Tigger1 2417 - 521 1806 123112 138 1135 177 137 813 147 41 2369 576 24 3 0 45 chain 22486 chr3 198022430 + 49371198 49371467 AluSp 311 + 10 297 118077 37 0 18 232 chain 24463 chr3 198022430 + 49375810 49376124 AluSp 311 + 0 311 107738 58 0 1 69 4 0 183 chain 28546 chr3 198022430 + 49391459 49391770 AluYb8 318 - 9 318 90984 191 2 0 118 chain 23603 chr3 198022430 + 49393300 49393587 AluY 311 + 14 307 112564 99 0 2 8 4 3 64 0 3 82 0 2 30 chain 23376 chr3 198022430 + 49409891 49410186 AluY 311 + 0 302 113777 47 5 11 74 1 2 168 chain 8035 chr3 198022430 + 49434594 49434859 L1MB8 1703 + 1452 1657 170834 31 7 8 26 0 5 14 4 5 47 115 48 21 chain 7348 chr3 198022430 + 49439132 49439225 Tigger4a 237 - 1 94 175113 93 chain 23524 chr3 198022430 + 49472627 49472928 AluSp 311 + 1 307 112990 63 1 3 74 0 1 31 4 6 128 chain 24314 chr3 198022430 + 49475619 49475917 AluSp 311 - 15 311 108585 14 4 2 280 chain 6428 chr3 198022430 + 49478694 49478767 LTR23 429 - 21 94 181792 73 chain 22948 chr3 198022430 + 49480407 49480703 AluSg7 307 - 6 296 115874 6 7 0 163 0 1 120 chain 4676 chr3 198022430 + 49485778 49486459 MER33 330 - 227 295 198799 36 613 0 32 chain 21887 chr3 198022430 + 49490868 49491137 AluSg4 309 + 8 274 120678 123 2 0 75 1 0 68 chain 29541 chr3 198022430 + 49494294 49494604 AluYa5 310 - 0 310 86462 310 chain 22084 chr3 198022430 + 49495226 49495511 AluSp 311 - 20 303 119869 49 7 6 116 1 0 112 chain 6952 chr3 198022430 + 49504577 49504658 5S 121 - 34 115 177793 81 chain 25949 chr3 198022430 + 49510566 49510880 AluYk4 311 + 0 304 100217 174 8 1 121 3 0 8 chain 47371 chr3 198022430 + 49519513 49520097 LTR5A 1029 + 204 794 60918 510 9 5 52 0 10 13 chain 23890 chr3 198022430 + 49543111 49543402 AluSp 311 - 19 311 110958 129 0 8 30 7 0 125 chain 25570 chr3 198022430 + 49564676 49564968 AluYk4 311 + 1 295 101874 171 7 9 114 chain 26334 chr3 198022430 + 49611090 49611389 AluSp 311 - 12 311 98675 299 chain 93207 chr3 198022430 + 49623364 49625968 L1MA1 4479 - 300 1675 38596 7 6 0 16 8 5 9 1 0 35 2 0 29 11 10 112 1 0 4 1 11 82 1 0 13 2 0 20 1 0 28 320 0 43 1 0 16 2 0 25 1 0 44 0 2 6 3 0 152 0 1 120 3 0 73 5 0 53 5 0 12 1 0 21 6 0 73 16 14 99 886 21 38 2 0 29 1 0 90 1 0 9 6 0 53 chain 10119 chr3 198022430 + 49654569 49654699 L1PA8 5853 + 5725 5853 159996 15 2 1 19 1 0 93 chain 20945 chr3 198022430 + 49657623 49657888 AluSx4 309 + 46 305 124134 249 6 0 10 chain 43089 chr3 198022430 + 49669294 49669888 L1MB3 1562 + 121 714 65301 12 9 8 90 1 5 190 1 0 185 6 3 100 chain 44448 chr3 198022430 + 49730173 49731542 L1MA2 4263 - 123 844 63636 15 3 1 9 4 2 9 1 0 40 14 7 91 1 0 9 2 1 85 634 0 43 12 7 15 18 24 76 0 3 28 16 15 70 1 0 4 1 0 3 2 0 98 0 1 65 chain 16564 chr3 198022430 + 49825953 49826173 L1MA2 4263 + 3833 4051 136752 123 11 9 86 chain 29122 chr3 198022430 + 49923586 49923891 AluYb8 318 + 0 305 88447 305 chain 22796 chr3 198022430 + 49951523 49951811 AluSp 311 - 12 307 116594 126 2 1 22 4 12 134 chain 21056 chr3 198022430 + 49969394 49969640 AluSg7 307 - 50 297 123708 125 0 1 121 chain 24162 chr3 198022430 + 49978819 49979102 AluSp 311 + 10 311 109415 44 0 18 239 chain 17748 chr3 198022430 + 49984471 49984695 AluY 311 + 83 293 133571 43 14 0 167 chain 23899 chr3 198022430 + 50066895 50067171 AluSx4 309 + 10 286 110916 276 chain 62129 chr3 198022430 + 50068410 50069171 L1PA5 6144 + 5397 6141 51839 35 24 6 439 9 10 107 0 1 111 1 0 35 chain 13222 chr3 198022430 + 50072553 50072717 MER50 708 - 23 189 147387 100 0 2 64 chain 4335 chr3 198022430 + 50089896 50089943 L1MB5 1630 - 1218 1265 202773 47 chain 9804 chr3 198022430 + 50117672 50117801 L1PA8 5853 - 97 245 161576 15 2 1 44 0 19 6 0 1 62 chain 184386 chr3 198022430 + 50121077 50123316 SVA_D 2077 - 0 2061 20553 18 2 0 56 1 0 558 1 0 44 4 0 13 78 0 63 1 0 112 1 0 175 0 2 60 78 0 29 11 0 29 2 0 10 2 0 147 3 0 33 0 3 37 0 1 671 chain 6122 chr3 198022430 + 50121774 50121852 SVA_D 2077 - 918 1043 117153 75 2 49 1 chain 5268 chr3 198022430 + 50122264 50122342 SVA_D 2077 - 874 952 105597 78 chain 2901 chr3 198022430 + 50167017 50167047 LTR32 486 + 333 363 227031 30 chain 12263 chr3 198022430 + 50190091 50190296 Tigger1a_Art 216 - 5 213 151143 37 1 18 10 21 6 6 1 0 85 1 3 43 chain 25652 chr3 198022430 + 50215704 50216701 Tigger1 2417 - 985 1380 101488 84 15 20 49 0 13 12 307 0 47 0 2 28 317 2 138 chain 25934 chr3 198022430 + 50264046 50264331 AluYk4 311 - 13 298 100283 285 chain 24846 chr3 198022430 + 50317309 50317603 AluSg7 307 - 12 307 105646 163 0 1 131 chain 4056 chr3 198022430 + 50346460 50347118 MER4-int 2692 + 1491 1842 83169 60 0 2 84 311 0 115 1 3 87 chain 171539 chr3 198022430 + 50348025 50350395 SVA_D 2077 - 1 2014 21877 10 8 0 650 11 23 165 276 0 184 0 1 7 1 0 2 123 0 87 11 0 29 2 0 15 2 0 139 0 40 388 0 13 260 chain 8550 chr3 198022430 + 50348879 50349050 SVA_D 2077 - 857 1028 98408 171 chain 6561 chr3 198022430 + 50349063 50349145 SVA_D 2077 - 640 722 69668 82 chain 2274 chr3 198022430 + 50349339 50349365 SVA_D 2077 - 742 768 143680 26 chain 7762 chr3 198022430 + 50349365 50349462 SVA_D 2077 - 895 992 69668 97 chain 1214 chr3 198022430 + 50351231 50351428 MER4-int 2692 + 2469 2691 83169 14 1 8 6 7 0 13 1 0 57 0 10 8 4 20 86 chain 72687 chr3 198022430 + 50557322 50558279 LTR5_Hs 974 + 0 974 47179 115 5 13 32 1 3 126 0 1 177 0 1 177 0 1 10 1 0 163 8 15 19 20 18 103 chain 4354 chr3 198022430 + 50622285 50622352 MLT1D-int 1367 + 45 106 202541 18 6 0 43 chain 25265 chr3 198022430 + 50656127 50656419 AluSc 308 - 17 308 103389 165 1 0 126 chain 11227 chr3 198022430 + 50698957 50699119 MSTB 430 - 240 414 155319 24 4 17 55 2 1 67 1 0 4 0 1 5 chain 176842 chr3 198022430 + 50723400 50726682 Charlie3 2679 - 22 2440 21268 657 620 19 107 0 9 33 1 3 41 4 0 141 11 12 82 10 25 230 0 1 33 0 3 47 0 3 211 2 4 4 1 0 188 2 4 55 314 0 29 1 0 9 10 0 158 2 8 83 3 7 81 3 4 22 0 18 87 chain 27327 chr3 198022430 + 50726682 50727066 THE1C 375 - 0 375 95185 25 1 0 210 14 10 5 3 0 63 1 0 62 chain 108944 chr3 198022430 + 50760940 50762268 L1PA7 6471 + 5122 6461 34454 492 0 3 93 2 1 211 1 2 66 0 3 248 1 3 16 0 3 181 0 1 12 1 0 4 chain 12738 chr3 198022430 + 50766827 50766967 L1PA3long 6157 - 5 145 149302 140 chain 93659 chr3 198022430 + 50773333 50774716 L1PA5 6144 - 0 1083 38455 785 305 0 58 0 4 130 0 1 105 chain 76247 chr3 198022430 + 50778710 50779544 L1PA3long 6157 - 0 837 45296 13 0 3 821 chain 144300 chr3 198022430 + 50779544 50781184 L1P1 4361 + 897 2544 25429 830 0 4 241 1 0 408 0 4 160 chain 16021 chr3 198022430 + 50788699 50788918 L1PA8 5853 - 0 216 138302 93 1 0 19 2 1 60 1 0 43 chain 45722 chr3 198022430 + 50799173 50799697 L1PA5 6144 + 5618 6144 62291 115 0 1 9 0 1 400 chain 10788 chr3 198022430 + 50801718 50801947 MER2 342 + 20 293 157040 29 79 123 121 chain 193496 chr3 198022430 + 50803572 50805780 L1PA5 6144 - 17 2232 19735 828 0 5 949 0 4 298 7 5 126 chain 23363 chr3 198022430 + 50805780 50806031 L1PA5 6144 + 3658 3909 110802 251 chain 72062 chr3 198022430 + 50807450 50808723 L1MA1 4479 + 2958 4190 47452 27 2 0 22 0 2 146 4 1 95 5 4 95 0 1 40 57 52 77 4 3 105 3 41 43 63 3 24 3 1 76 32 29 14 1 0 18 0 14 56 1 0 5 3 0 23 0 1 102 1 0 28 12 10 26 1 0 9 1 0 11 4 1 9 7 0 18 chain 19089 chr3 198022430 + 50814262 50814629 THE1B 368 - 0 368 129850 116 74 75 39 26 27 63 0 1 34 2 0 13 chain 15116 chr3 198022430 + 50818214 50818562 L1MA5A 2387 - 118 461 140999 37 82 76 49 1 0 8 31 30 36 6 5 12 0 4 86 chain 117042 chr3 198022430 + 50820087 50827137 L1PB1 5432 - 9 3686 32110 19 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 15 9 0 15 6 0 14 2 1 45 1 0 15 2 1 52 2 0 9 5 1 10 23 14 13 1167 801 100 2 0 482 20 17 61 4068 1110 4 0 1 47 13 0 120 8 7 58 0 2 40 0 3 12 4 5 56 1 5 444 chain 23985 chr3 198022430 + 50824697 50824976 AluSp 311 + 13 294 110412 262 0 2 17 chain 42665 chr3 198022430 + 50838474 50839009 LTR10F 562 - 0 562 65825 58 1 0 4 5 2 124 0 1 9 1 0 102 0 31 231 chain 133730 chr3 198022430 + 50840516 50842197 SVA_B 1603 - 12 1603 27271 601 5 5 9 1 0 9 4 0 47 4 0 42 50 0 14 1 0 12 1 0 251 40 1 403 1 0 153 0 22 9 11 0 13 chain 2683 chr3 198022430 + 50841242 50841283 SVA_B 1603 - 683 724 171976 41 chain 37073 chr3 198022430 + 50854314 50854800 MER41A 554 - 0 554 73424 85 7 1 83 0 5 164 0 70 67 8 7 72 chain 57469 chr3 198022430 + 50860606 50861250 SVA_D 2077 - 16 652 54260 137 8 0 291 0 1 177 1 0 30 chain 7809 chr3 198022430 + 50868238 50868607 MER41B 635 - 86 462 69417 69 11 18 289 chain 70384 chr3 198022430 + 50868668 50869511 L1PA7 6471 - 2 850 48221 10 3 0 34 0 9 203 1 0 592 chain 38267 chr3 198022430 + 50869513 50869951 L1PA7 6471 + 5180 5618 71754 438 chain 3640 chr3 198022430 + 50869953 50870125 MER41B 635 - 462 635 69417 44 1 2 127 chain 79940 chr3 198022430 + 50873595 50874694 THE1C-int 1605 - 524 1604 43626 224 18 24 57 32 7 18 6 0 287 15 20 288 0 2 132 2 0 6 3 4 11 chain 15424 chr3 198022430 + 50891412 50891670 L1PA17 2846 - 156 405 140119 40 1 0 19 1 0 23 23 22 52 1 0 15 10 5 73 chain 21741 chr3 198022430 + 50893630 50894096 L1PA11 4918 - 289 720 121240 18 119 94 9 4 0 19 3 1 14 2 0 40 0 1 27 5 0 11 1 0 63 7 1 54 1 0 22 0 10 47 chain 83313 chr3 198022430 + 50894876 50895853 L1PA6 6164 + 5164 6149 42196 150 0 8 827 chain 25131 chr3 198022430 + 50896641 50896946 AluSc 308 - 5 308 104119 111 2 0 192 chain 50353 chr3 198022430 + 50902888 50906407 L1MA2 4263 - 158 2781 58754 15 41 36 6 2 0 82 1 0 9 10 9 142 12 9 135 6 5 16 15 14 41 0 1 4 13 7 39 7 34 117 2503 1602 31 0 7 25 25 27 40 6 0 68 0 7 25 34 21 49 chain 24746 chr3 198022430 + 50912307 50912645 L1PA8 5853 + 5510 5853 106190 54 1 0 46 3 1 70 4 11 7 0 3 38 2 1 21 1 0 91 chain 12050 chr3 198022430 + 50914281 50914495 MER30 238 + 0 238 151983 14 28 35 57 4 0 7 8 29 96 chain 468421 chr3 198022430 + 50915277 50920705 L1PA5 6144 + 704 6143 8092 465 9 0 265 0 2 877 1 0 226 1 0 589 0 5 1096 0 9 103 0 4 1785 1 3 10 chain 30083 chr3 198022430 + 50923841 50924187 L1PA3long 6157 - 0 342 84552 243 5 1 98 chain 115068 chr3 198022430 + 50924187 50925652 L1P1 4361 + 2874 4341 32767 127 0 1 578 2 1 100 0 2 5 2 0 224 60 62 31 0 3 140 1 0 157 1 0 23 2 1 12 chain 14252 chr3 198022430 + 50931237 50931404 L1PA5 6144 + 5817 5984 143710 167 chain 13747 chr3 198022430 + 50931411 50931568 L1PA5 6144 + 5984 6141 145448 157 chain 521547 chr3 198022430 + 50932952 50939360 L1PA7 6471 - 5 6469 5004 179 1 0 5 6 7 138 1 0 79 4 0 243 0 21 170 0 3 24 0 2 19 0 8 277 4 1 189 0 1 13 0 1 63 0 3 71 1 0 4 1 2 265 1 5 338 0 3 34 8 10 381 2 1 750 3 1 55 0 4 454 0 1 7 2 3 488 9 1 33 0 12 195 2 0 477 0 3 262 6 0 53 0 9 340 1 0 4 7 10 274 0 1 24 4 5 34 4 6 208 1 0 190 chain 126923 chr3 198022430 + 50939464 50941186 L1PA11 4918 - 548 2327 28832 30 14 9 40 0 40 37 0 1 204 13 18 232 6 8 60 0 2 56 1 0 4 0 1 79 16 20 188 1 0 8 0 2 133 0 6 387 0 1 167 0 1 4 9 8 33 chain 439147 chr3 198022430 + 50941202 50960101 L1PA5 6144 - 5 6144 9075 312 0 2 530 0 4 15 15 0 181 0 13 1835 6 9 27 0 7 28 1 0 18 1 0 443 0 3 176 1 0 20 0 1 320 0 2 92 13410 612 68 0 1 10 0 1 238 9 0 169 0 1 732 4 5 98 0 12 19 1 15 120 chain 298820 chr3 198022430 + 50955192 50958630 L1PA5 6144 - 0 3451 13490 1368 0 1 139 0 5 98 0 1 187 0 4 296 0 1 248 0 2 1049 1 0 52 chain 3399 chr3 198022430 + 50964809 50964847 L1MA4 2864 + 2766 2804 217081 38 chain 8401 chr3 198022430 + 50991553 50991740 L1MB3 1562 - 130 318 168850 11 1 0 37 43 48 45 11 8 39 chain 19518 chr3 198022430 + 50999431 50999668 L1PA7 6471 - 2 234 128596 16 4 0 137 2 1 78 chain 544741 chr3 198022430 + 51010576 51016601 L1PA3long 6157 - 5 6157 2104 2463 1 0 2785 0 128 34 1 0 589 1 2 151 chain 3330 chr3 198022430 + 51029407 51029446 L1PA12 2803 + 394 433 218400 39 chain 519706 chr3 198022430 + 51044056 51050214 L1PA5 6144 - 0 6139 5188 846 1 5 279 1 0 5 0 1 144 1 0 242 2 0 202 4 0 219 0 1 99 0 10 415 0 1 1359 23 22 800 8 4 940 26 1 108 5 6 119 0 1 310 chain 109602 chr3 198022430 + 51050224 51051728 L1P2 5180 - 3673 5178 34298 67 1 0 325 5 6 315 2 1 6 1 0 253 39 37 56 0 1 36 8 7 17 5 13 120 1 0 45 1 0 52 1 0 148 chain 80219 chr3 198022430 + 51057481 51058613 L1PA11 4918 - 340 1450 43497 11 2 0 13 1 0 15 44 31 13 3 0 5 0 2 14 2 0 80 14 13 53 5 0 43 0 1 367 5 6 385 0 1 57 chain 16683 chr3 198022430 + 51058618 51058822 L1PA10 4194 + 1033 1237 136457 123 0 1 51 2 1 28 chain 22735 chr3 198022430 + 51074138 51074494 THE1B 368 + 1 368 116895 76 5 6 24 2 3 19 21 23 20 2 1 133 5 13 49 chain 6661 chr3 198022430 + 51084619 51084700 L1PA5 6144 + 5913 5996 179978 57 0 2 24 chain 13204 chr3 198022430 + 51084700 51084842 L1PA5 6144 + 5997 6139 147445 142 chain 16918 chr3 198022430 + 51086091 51086475 Tigger4 2445 - 135 395 135800 24 1 2 14 1 0 27 0 4 24 128 0 45 1 2 62 3 2 54 chain 44957 chr3 198022430 + 51097750 51098252 L1PA4 6152 - 925 1428 63111 211 0 1 291 chain 78624 chr3 198022430 + 51098254 51099145 L1PA4 6152 + 5252 6143 44213 891 chain 42708 chr3 198022430 + 51123392 51123881 MER9a3 513 - 20 513 65767 478 0 4 11 chain 277186 chr3 198022430 + 51131424 51135502 L1P3 4156 - 17 4156 14797 23 1 0 9 2 0 31 6 5 336 0 3 38 1 0 104 6 8 32 0 4 26 5 4 22 1 0 137 1 498 230 7 2 80 1 15 370 461 5 29 0 1 145 19 0 208 1 0 14 9 4 116 6 4 78 0 1 160 0 3 173 0 26 80 0 11 202 4 5 182 9 10 267 13 8 25 1 0 85 1 0 59 13 12 249 chain 29101 chr3 198022430 + 51138540 51138850 AluYb8 318 - 8 318 88547 310 chain 517844 chr3 198022430 + 51152095 51158879 L1PA7 6471 - 10 6468 5390 410 2 11 148 2 1 4 0 1 182 0 1 82 1 0 83 0 1 582 319 0 124 0 1 751 12 11 280 0 3 232 0 4 854 2 1 10 15 0 1 0 1 37 3 4 292 0 1 51 0 9 16 1 0 482 0 4 6 4 0 8 0 4 664 0 1 181 0 1 511 25 0 407 chain 27542 chr3 198022430 + 51164392 51164782 MLT2A1 477 - 77 477 94528 15 0 2 27 0 8 144 0 1 12 9 10 11 4 1 104 6 7 58 chain 401917 chr3 198022430 + 51164782 51170070 HERVL-int 5654 - 0 5375 10029 272 1 3 461 0 1 19 25 28 374 1 0 16 0 16 100 0 1 69 0 5 195 0 1 4 1 0 70 0 3 659 1 4 296 5 13 213 0 1 40 0 1 54 1 0 464 321 0 8 1 0 164 11 20 284 0 1 55 1 2 209 19 23 136 18 1 176 1 6 42 0 4 146 0 1 146 0 2 11 6 7 38 0 356 154 chain 51664 chr3 198022430 + 51170070 51171254 HERVL-int 5654 + 432 1087 57727 525 538 8 116 0 1 5 chain 45138 chr3 198022430 + 51170606 51171125 L1PA5 6144 - 9 529 62882 58 0 1 461 chain 6632 chr3 198022430 + 51174395 51174466 L1PA3long 6157 + 6085 6156 180230 71 chain 17467 chr3 198022430 + 51182667 51182895 L1PA4 6152 - 6 234 134337 146 5 0 6 13 18 58 chain 511909 chr3 198022430 + 51184774 51191070 L1PA6 6164 - 2 6164 5987 10 3 0 134 3 4 691 15 14 943 0 4 821 1 2 266 0 3 80 0 1 711 0 29 124 2 0 190 184 0 316 8 9 348 0 4 5 2 1 633 0 17 319 20 20 36 20 21 70 12 6 265 1 2 63 chain 13092 chr3 198022430 + 51188769 51188943 L1P2 5180 + 888 2598 147874 128 0 1536 46 chain 19728 chr3 198022430 + 51205613 51206040 L1PREC2 3366 + 2663 3048 128022 12 1 0 77 9 7 47 1 0 44 1 0 3 3 0 14 4 9 10 15 2 12 15 10 12 2 0 29 4 1 11 36 22 21 6 4 38 chain 32131 chr3 198022430 + 51218582 51218939 L1PA5 6144 - 12 369 80641 357 chain 1836 chr3 198022430 + 51223035 51223204 THE1B 368 + 0 172 103062 13 2 0 27 0 5 127 chain 11883 chr3 198022430 + 51223217 51223411 THE1B 368 + 183 368 152684 10 30 22 79 1 0 74 chain 122980 chr3 198022430 + 51223412 51224996 THE1B-int 1605 + 1 1605 30053 85 0 4 340 1 26 256 3 2 17 8 1 467 6 5 401 chain 11318 chr3 198022430 + 51224996 51225159 THE1B 368 + 0 172 155005 13 2 0 27 0 5 86 8 14 27 chain 2227 chr3 198022430 + 51225162 51225367 THE1B 368 + 173 368 103062 21 15 5 169 chain 551938 chr3 198022430 + 51236480 51242602 L1PA3long 6157 + 0 6152 1200 710 0 7 358 1 0 114 0 3 104 0 1 114 0 9 213 2 0 759 0 4 9 1 0 734 0 5 670 1 2 541 0 4 1791 chain 44702 chr3 198022430 + 51248800 51249325 L1PA5 6144 - 0 532 63374 147 10 17 55 1 0 40 0 1 272 chain 34844 chr3 198022430 + 51268859 51269402 L1PA16 3655 - 567 1115 76414 17 5 8 64 8 10 23 4 0 35 10 9 10 6 9 155 9 8 7 0 3 55 1 0 106 0 1 28 chain 11966 chr3 198022430 + 51275359 51275512 L1MB3 1562 - 148 302 152333 61 0 1 92 chain 149588 chr3 198022430 + 51276962 51279154 L1PA13 3608 - 1335 3495 24676 32 37 1 11 1 5 264 0 9 5 1 0 11 7 9 411 0 7 11 3 9 18 5 4 122 0 1 8 0 1 86 1 0 98 8 13 85 1 0 88 1 0 121 1 4 70 0 2 137 2 0 95 0 4 12 25 21 17 25 20 16 2 0 17 1 0 14 1 0 125 2 0 68 31 20 24 4 1 10 3 2 28 3 0 23 chain 165872 chr3 198022430 + 51285724 51287717 SVA_D 2077 + 135 2076 22530 653 39 0 119 0 82 45 2 4 145 48 0 199 0 8 8 8 0 59 51 0 329 0 2 288 chain 4216 chr3 198022430 + 51286727 51286775 SVA_D 2077 + 1310 1408 97949 29 0 50 19 chain 2050 chr3 198022430 + 51287049 51287086 SVA_D 2077 + 1056 1093 110036 37 chain 459519 chr3 198022430 + 51288295 51293694 L1PA5 6144 - 0 6144 8420 9 7 0 329 0 1 240 2 0 262 0 10 1419 1 0 67 3 4 128 1 0 200 0 1 4 1 0 56 0 1 4 1 0 93 0 1 185 0 5 29 12 4 1060 0 1 617 1 6 238 9 0 330 0 749 91 chain 520945 chr3 198022430 + 51298549 51305573 L1PA7 6471 + 0 6461 5063 135 0 1 91 10 12 169 1 3 260 2 1 707 1 0 1251 3 4 68 8 12 163 9 13 206 0 4 134 1 9 209 366 65 53 0 3 39 2 0 194 17 18 160 0 1 365 0 3 68 0 1 203 0 19 551 1 2 42 1 2 379 0 9 303 0 1 81 324 0 291 7 0 8 1 8 140 chain 8607 chr3 198022430 + 51318608 51318705 MER30 238 - 6 103 167688 97 chain 23174 chr3 198022430 + 51319812 51320113 AluSp 311 + 21 311 114790 38 6 0 30 5 0 222 chain 86501 chr3 198022430 + 51327152 51328116 L1PA5 6144 + 5166 6134 40968 131 0 4 833 chain 293643 chr3 198022430 + 51337289 51341082 L1PA10 4194 - 44 3831 13787 34 3 0 230 0 1 89 0 9 153 1 4 234 1 0 265 1 0 174 0 1 217 0 1 108 4 0 128 8 7 122 25 1 118 0 1 163 1 5 36 2 0 81 2 0 86 0 4 321 1 4 70 24 30 526 10 19 21 3 1 20 0 3 35 6 5 4 0 1 52 8 9 267 4 2 85 1 0 8 7 0 15 1 0 10 1 0 7 chain 129666 chr3 198022430 + 51345650 51347066 SVA_D 2077 - 0 2077 28167 573 1 622 253 0 40 589 chain 467774 chr3 198022430 + 51357456 51363501 L1PA7 6471 + 0 6470 8120 46 0 3 192 13 21 140 11 0 5 2 0 15 0 1 750 3 4 383 0 1 541 0 2 20 9 0 27 320 0 27 0 4 413 9 17 29 3 0 69 59 2 408 0 22 342 3 2 62 0 763 42 1 0 323 0 4 184 0 6 85 1 0 373 1 0 271 0 4 22 0 3 75 1 0 753 0 2 12 chain 173761 chr3 198022430 + 51383578 51385535 L1PA5 6144 - 5 1965 21616 66 0 1 369 0 1 691 0 1 831 chain 405793 chr3 198022430 + 51400927 51405545 L1PA5 6144 - 7 4626 9918 54 0 1 795 2 1 144 0 4 127 0 1 124 0 1 329 0 1 54 4 0 1299 2 0 26 0 1 861 2 1 795 chain 115487 chr3 198022430 + 51405546 51407000 L1PA5 6144 + 14 1510 32612 111 1 15 19 0 12 618 1 0 26 0 17 237 4 7 94 9 0 147 0 5 6 6 1 74 1 0 81 0 7 19 chain 548447 chr3 198022430 + 51489936 51496088 L1PA4 6152 + 0 6151 1646 456 12 6 118 1 0 740 0 1 4 2 0 48 0 1 1755 0 4 119 0 4 684 0 1 406 2 0 7 1 0 1797 chain 26835 chr3 198022430 + 51501367 51501669 L1PA5 6144 + 5833 6138 96853 67 0 3 235 chain 24678 chr3 198022430 + 51531326 51531620 AluSg 306 + 3 298 106563 52 1 2 241 chain 35484 chr3 198022430 + 51567700 51568124 MER48 407 - 3 407 75580 253 20 0 151 chain 11656 chr3 198022430 + 51571151 51571323 MSTA 426 - 234 416 153662 35 21 31 116 chain 22591 chr3 198022430 + 51571685 51571973 AluSq2 311 + 10 297 117625 42 6 5 240 chain 23180 chr3 198022430 + 51585775 51586065 AluSc 308 - 17 308 114766 177 4 5 109 chain 351042 chr3 198022430 + 51607876 51611915 L1PA5 6144 - 12 6144 11567 136 1 2 1125 1 0 247 1 0 89 0 1 214 0 1 497 0 1 539 0 1 103 3 0 51 0 5 877 15 1738 16 0 365 124 chain 27446 chr3 198022430 + 51616782 51617080 AluYb8 318 - 20 318 94830 298 chain 140103 chr3 198022430 + 51641122 51642890 SVA_B 1603 - 0 1603 26128 625 114 0 17 41 0 909 23 13 39 chain 6406 chr3 198022430 + 51641792 51641861 SVA_B 1603 - 516 585 165567 69 chain 665 chr3 198022430 + 51641889 51641919 SVA_B 1603 - 654 684 150946 30 chain 21335 chr3 198022430 + 51645577 51645871 AluSg7 307 - 12 307 122737 13 2 0 76 0 1 78 19 21 106 chain 5367 chr3 198022430 + 51650120 51650242 L1MA4 2864 - 30 140 191340 17 16 8 29 1 0 14 1 4 24 6 0 14 chain 520693 chr3 198022430 + 51681874 51687951 L1PA6 6164 + 32 6158 5083 477 2 1 77 1 0 200 0 17 120 0 5 504 0 3 105 0 4 384 0 11 17 0 1 375 0 1 804 0 1 56 1 2 1168 0 4 122 1 2 157 0 5 229 1 0 520 1 0 649 1 0 105 chain 3440 chr3 198022430 + 51769753 51769797 L1MB3 1562 - 286 330 216373 44 chain 53018 chr3 198022430 + 51771203 51771862 L1PA8 5853 - 0 653 57006 25 9 0 7 0 9 51 2 1 19 2 1 61 1 0 71 2 0 44 1 0 364 chain 432245 chr3 198022430 + 51776822 51781996 HERV9-int 5642 + 4 5095 9256 44 0 1 188 0 3 16 0 1 343 2 0 116 6 0 79 5 4 49 2 0 255 80 0 15 4 0 488 10 1 304 0 1 704 1 0 4 0 1 1408 3 6 125 0 10 836 0 2 87 chain 30830 chr3 198022430 + 51786991 51787419 MER4A1 472 - 10 456 82809 183 14 9 22 11 32 115 0 2 69 1 0 8 0 1 5 chain 49200 chr3 198022430 + 51788017 51788953 LTR10C 591 - 0 589 59596 36 355 0 43 5 14 233 1 0 263 chain 26688 chr3 198022430 + 51820708 51821094 THE1A 353 + 0 353 97356 110 11 10 53 31 0 25 1 0 155 chain 125231 chr3 198022430 + 51821094 51822672 THE1A-int 1579 + 0 1577 29313 278 3 6 189 33 35 305 11 5 759 chain 7966 chr3 198022430 + 51861972 51862099 MSTA 426 + 323 426 171241 66 24 0 37 chain 64635 chr3 198022430 + 51862208 51863031 L1PREC2 3366 - 1154 2003 50733 146 1 0 66 0 1 6 1 0 61 1 0 160 5 18 159 1 0 4 0 1 147 0 15 65 chain 206457 chr3 198022430 + 51875845 51879202 MER61-int 3695 - 967 3657 18756 15 10 5 93 1 0 304 4 5 437 316 0 530 0 1 113 0 3 95 0 5 78 0 3 83 0 2 103 9 7 10 306 0 194 0 1 34 5 6 189 15 1 139 7 6 64 37 0 4 2 0 49 0 2 48 1 0 49 1 0 12 chain 62893 chr3 198022430 + 51883818 51884635 LTR12 884 + 0 884 51492 55 0 41 22 0 25 234 2 0 267 1 6 57 6 5 132 2 1 39 chain 316104 chr3 198022430 + 51884674 51888637 HERV9-int 5642 + 11 4824 12759 190 0 1 392 12 11 9 5 0 116 5 4 62 2 1 167 27 27 66 80 0 50 3 0 144 1 0 25 2 0 7 1 3 125 0 1 680 0 3 403 8 9 503 7 942 110 1 2 296 1 0 452 0 1 11 chain 67002 chr3 198022430 + 51890259 51891079 LTR12 884 + 0 884 49653 78 1 67 162 1 2 68 2 0 332 1 0 175 chain 150423 chr3 198022430 + 51891965 51893688 SVA_D 2077 + 2 2077 24550 5 3 0 6 5 0 18 1 0 185 1 0 672 24 166 6 0 1 115 0 225 664 6 0 12 chain 3399 chr3 198022430 + 51902257 51902295 L1PA2 6032 + 5992 6030 217085 38 chain 30884 chr3 198022430 + 51906501 51907039 L1MB3 1562 + 1038 1555 82712 124 29 31 8 1 0 12 0 4 40 1 5 80 10 9 70 52 24 22 1 0 57 1 0 16 0 1 14 chain 55660 chr3 198022430 + 51929814 51930563 MER4E1 777 + 0 769 55333 172 0 5 84 0 5 65 1 20 185 28 19 214 chain 39312 chr3 198022430 + 51930977 51931451 LTR10F 562 + 0 562 70304 115 0 84 32 3 0 273 0 7 51 chain 210988 chr3 198022430 + 51933306 51936318 HERVIP10FH-int 2884 + 151 2866 18431 62 3 0 186 4 0 223 2 1 62 1 0 50 0 1 348 0 1 119 2 0 176 4 1 7 3 0 11 2 1 6 1 0 61 6 1 130 8 0 15 62 39 14 20 3 43 22 10 42 10 0 15 5 4 265 7 4 198 5 4 20 1 0 365 1 0 66 1 0 50 1 0 17 1 0 13 10 4 35 209 22 9 2 0 11 chain 45313 chr3 198022430 + 51936389 51936926 LTR10F 562 + 0 562 62703 134 1 29 68 3 0 331 chain 14785 chr3 198022430 + 51939140 51939332 THE1B 368 + 173 368 141986 25 0 2 93 1 0 47 0 1 8 0 1 18 chain 124013 chr3 198022430 + 51939332 51940899 THE1B-int 1605 + 0 1605 29699 178 1 0 90 10 13 149 1 26 25 0 1 4 1 0 161 0 2 26 0 1 4 0 2 421 0 6 496 chain 14318 chr3 198022430 + 51941398 51941573 THE1B 368 + 190 366 143503 8 0 2 93 1 0 73 chain 40101 chr3 198022430 + 51949798 51950323 MER4B 649 + 2 572 69181 28 0 1 104 2 40 137 4 6 49 0 4 201 chain 24354 chr3 198022430 + 52013958 52014227 AluYf5 307 - 28 297 108351 269 chain 101685 chr3 198022430 + 52024390 52025642 LTR12C 1709 + 0 1709 36347 270 6 0 28 9 0 352 0 278 143 0 47 106 0 4 114 0 29 69 0 101 36 0 10 107 0 3 12 chain 23800 chr3 198022430 + 52030177 52030473 AluSq4 311 - 5 303 111480 43 6 7 129 2 3 116 chain 90433 chr3 198022430 + 52195393 52200704 MER4-int 2692 + 755 2692 39498 46 2055 314 12 1 0 38 54 62 93 10 8 88 4 3 14 1277 45 34 5 0 28 0 4 18 2 1 4 0 1 34 10 11 93 23 7 39 0 1 19 0 5 87 0 1 18 55 46 11 2 0 30 4 6 24 3 1 5 2 0 59 3 0 6 14 0 39 14 15 14 3 0 91 1 0 45 10 0 197 37 23 148 340 0 33 0 1 15 chain 24905 chr3 198022430 + 52198127 52198412 AluSp 311 + 11 296 105310 285 chain 8265 chr3 198022430 + 52207047 52207171 MER3 215 + 61 198 169590 97 10 23 17 chain 10796 chr3 198022430 + 52214281 52214421 L1P3 4156 + 4002 4139 157007 105 2 0 7 2 1 24 chain 24334 chr3 198022430 + 52214852 52215139 AluY 311 + 10 298 108452 200 0 1 87 chain 8738 chr3 198022430 + 52234234 52234425 L1MB3 1562 - 29 201 166987 10 0 6 19 4 7 27 1 0 18 52 25 60 chain 4744 chr3 198022430 + 52247920 52247999 L1MB7 1623 - 210 285 197978 38 1 0 10 4 2 19 1 0 6 chain 22284 chr3 198022430 + 52266751 52267034 AluSp 311 + 1 289 118977 136 11 17 75 2 1 59 chain 22526 chr3 198022430 + 52285502 52285788 AluSx4 309 + 10 297 117906 60 0 3 213 2 0 11 chain 23755 chr3 198022430 + 52299050 52299344 AluY 311 + 1 311 111738 62 0 15 54 1 2 177 chain 19154 chr3 198022430 + 52370019 52370283 L1P4 1494 - 84 350 129667 20 2 0 40 1 0 45 1 6 155 chain 24048 chr3 198022430 + 52401594 52401877 AluSp 311 - 16 300 110054 88 2 3 193 chain 3487 chr3 198022430 + 52498447 52498528 L1MB7 1623 - 592 680 215574 34 20 27 8 1 0 4 0 1 14 chain 5904 chr3 198022430 + 52531734 52531806 MER2 342 + 251 323 186147 72 chain 24604 chr3 198022430 + 52572488 52572776 AluSp 311 - 23 311 106973 288 chain 25085 chr3 198022430 + 52596056 52596360 AluY 311 + 1 300 104379 117 6 0 14 0 1 167 chain 23368 chr3 198022430 + 52652774 52653052 AluSp 311 - 19 299 113824 180 0 2 98 chain 6886 chr3 198022430 + 52664380 52664495 MER3 215 - 5 136 178298 44 0 16 14 1 0 6 13 14 37 chain 8761 chr3 198022430 + 52679109 52679249 MER44C 733 - 31 185 166863 30 17 31 93 chain 26312 chr3 198022430 + 52686117 52686417 AluSq10 312 + 0 300 98777 300 chain 24283 chr3 198022430 + 52710280 52710616 THE1A 353 + 7 342 108751 38 1 0 65 1 0 83 6 5 11 5 7 126 chain 37452 chr3 198022430 + 52710627 52711092 THE1A-int 1579 + 0 471 72888 131 0 2 23 0 3 133 1 2 177 chain 7764 chr3 198022430 + 52747361 52747480 LTR43 600 + 402 520 172513 44 2 0 24 0 1 11 6 0 9 0 6 23 chain 4572 chr3 198022430 + 52748295 52748345 LTR54 533 + 2 52 199971 50 chain 15478 chr3 198022430 + 52759579 52759926 L1M4c 1769 + 1385 1734 139968 19 25 19 5 0 1 97 34 41 17 1 0 44 51 53 49 1 0 4 chain 83981 chr3 198022430 + 52762359 52763380 MER11A 1151 + 1 1151 41910 54 0 99 134 10 6 522 0 1 4 5 38 292 chain 28253 chr3 198022430 + 52800721 52801022 AluYb8 318 + 1 302 92100 301 chain 4123 chr3 198022430 + 52824467 52824583 MIRb 242 + 67 216 205610 42 52 85 22 chain 2548 chr3 198022430 + 52885870 52885971 MIR 256 + 26 141 232496 4 1 0 16 38 52 21 6 7 15 chain 118227 chr3 198022430 + 52897558 52899422 THE1A-int 1579 - 8 1579 31719 4 0 1 59 1 0 813 40 58 77 0 1 42 6 9 58 3 0 251 6 9 24 318 0 55 3 6 104 chain 17109 chr3 198022430 + 52899426 52899756 THE1A 353 - 24 353 135284 35 0 2 69 17 19 5 2 0 65 17 15 6 0 2 17 31 30 16 0 1 34 2 0 9 1 0 4 chain 16486 chr3 198022430 + 52952863 52953118 MER1B 344 - 5 280 136966 58 2 0 12 8 16 39 0 12 19 6 7 44 3 4 64 chain 23297 chr3 198022430 + 52985673 52985952 MER9a1 513 - 235 513 114223 56 1 0 222 chain 24308 chr3 198022430 + 52987874 52988169 AluY 311 + 11 311 108609 81 3 6 34 0 2 177 chain 114134 chr3 198022430 + 52989460 52991548 L1PA10 4194 + 2675 4150 33056 296 0 1 164 3 1 226 0 1 37 620 0 245 0 2 88 2 1 106 0 2 140 2 0 94 14 23 14 3 0 34 chain 25584 chr3 198022430 + 53000056 53000663 AluY 311 + 5 305 101804 128 307 0 172 chain 13758 chr3 198022430 + 53000186 53000353 AluY 311 + 136 297 145408 93 5 0 46 1 0 22 chain 11123 chr3 198022430 + 53000364 53000490 AluY 311 + 5 131 155719 126 chain 10866 chr3 198022430 + 53015196 53015363 Tigger2 2703 + 979 1151 156717 79 7 13 45 9 8 27 chain 17549 chr3 198022430 + 53020198 53020497 Tigger3b 1229 - 299 605 134130 38 1 0 22 1 5 64 36 31 45 0 8 18 6 5 44 0 2 24 chain 22062 chr3 198022430 + 53031299 53031567 AluY 311 + 28 298 119957 77 0 1 26 0 1 165 chain 25280 chr3 198022430 + 53036145 53036440 AluY 311 + 11 308 103313 96 1 2 23 0 1 175 chain 27473 chr3 198022430 + 53046419 53046717 AluYh9 303 - 8 303 94737 14 3 0 281 chain 9019 chr3 198022430 + 53061862 53061991 MER85 139 - 0 139 165500 29 4 14 96 chain 22839 chr3 198022430 + 53145157 53145434 AluY 311 + 10 295 116397 28 0 8 249 chain 5325 chr3 198022430 + 53216182 53216289 MIR 256 + 26 132 191769 29 36 35 42 chain 6086 chr3 198022430 + 53243979 53244058 MADE1 96 + 1 96 184531 46 0 16 33 chain 2879 chr3 198022430 + 53249689 53249722 MER41B 635 + 514 547 227394 33 chain 5685 chr3 198022430 + 53303209 53303282 MLT2C1 407 + 0 75 188252 36 0 2 37 chain 25755 chr3 198022430 + 53312965 53313648 MER4A1 472 - 0 413 101063 67 10 9 24 0 2 82 322 26 17 0 21 48 0 5 37 1 0 75 chain 9077 chr3 198022430 + 53382102 53382217 LTR23 429 - 25 140 165177 115 chain 557510 chr3 198022430 + 53399323 53405352 L1PA2 6032 - 0 6032 555 11 4 0 1005 1 8 5008 chain 511787 chr3 198022430 + 53425183 53431309 L1PA6 6164 + 0 6162 6001 213 0 5 3 4 0 13 0 5 171 1 0 100 1 0 277 0 17 489 0 1 67 11 12 41 6 1 6 0 5 20 2 0 410 0 4 469 5 0 860 0 1 515 0 2 247 0 1 413 0 4 125 0 2 10 0 1 223 0 1 145 1 0 409 0 5 111 1 0 620 1 2 136 chain 84955 chr3 198022430 + 53431444 53432451 L1PA6 6164 - 3 1012 41534 139 8 0 9 2 10 107 0 1 580 1 2 161 chain 10082 chr3 198022430 + 53432451 53432559 L1PA6 6164 + 5037 5145 159741 108 chain 22964 chr3 198022430 + 53433848 53434130 AluSc 308 - 18 299 115787 121 1 0 160 chain 12631 chr3 198022430 + 53438065 53438250 L1PA8 5853 - 0 182 149725 48 0 1 44 1 0 19 2 1 41 7 6 14 1 0 8 chain 5449 chr3 198022430 + 53438483 53438541 L1PA6 6164 + 6104 6162 190534 58 chain 3175 chr3 198022430 + 53450509 53450543 MIRc 230 - 19 53 221422 34 chain 15148 chr3 198022430 + 53471491 53471714 MER30 238 - 0 238 140920 45 3 0 65 4 21 89 4 5 13 chain 23168 chr3 198022430 + 53471741 53472012 AluY 311 + 38 310 114824 94 0 1 177 chain 523015 chr3 198022430 + 53474785 53480929 L1PA5 6144 - 16 6139 4863 130 17 17 55 0 1 207 0 2 618 0 1 61 1 0 22 1 0 28 0 1 450 0 1 603 0 1 56 2 1 114 0 1 83 1 0 743 1 2 1760 9 0 893 2 0 52 10 1 90 14 8 121 chain 110536 chr3 198022430 + 53492718 53493972 L1PA5 6144 - 12 1269 34069 136 0 3 520 1 0 179 0 1 418 chain 15872 chr3 198022430 + 53497903 53498231 L1PB1 5432 - 13 315 138734 15 6 5 8 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 25 12 16 1 0 30 1 0 14 1 0 15 2 1 30 0 8 12 3 1 10 2 0 3 2 0 9 1 0 13 2 0 17 chain 517137 chr3 198022430 + 53501993 53508103 L1PA6 6164 - 2 6164 5470 924 0 1 4 1 0 226 0 1 455 4 0 953 0 30 1242 0 1 508 0 1 244 0 3 285 5 6 454 0 17 183 5 0 57 1 0 48 0 2 73 1 3 95 6 8 62 2 0 34 20 22 23 0 1 33 1 2 161 chain 105120 chr3 198022430 + 53510283 53511536 L1PA7 6471 - 4 1263 35470 13 0 2 164 0 3 5 3 0 133 0 8 98 5 1 28 0 2 239 2 1 155 1 0 407 chain 7017 chr3 198022430 + 53547272 53547386 Tigger3c 601 + 52 156 177348 60 14 6 31 2 0 7 chain 22208 chr3 198022430 + 53576809 53577075 AluSp 311 + 10 278 119310 77 2 1 27 0 3 160 chain 26921 chr3 198022430 + 53698785 53699173 LTR3 431 - 16 405 96545 111 0 1 6 16 15 18 1 0 5 1 0 131 16 19 83 chain 2802 chr3 198022430 + 53776167 53776197 MADE2 80 - 13 43 228702 30 chain 22566 chr3 198022430 + 53842195 53842455 AluY 311 + 36 297 117731 94 3 4 163 chain 23781 chr3 198022430 + 53903039 53903314 AluY 311 + 13 289 111587 119 0 1 156 chain 54432 chr3 198022430 + 53937716 53938358 PABL_A 660 - 0 660 56076 72 1 0 161 0 1 136 0 1 72 0 4 119 0 9 30 0 4 51 chain 22225 chr3 198022430 + 53946874 53947200 MER50B 698 - 0 304 119237 51 0 1 110 1 0 25 1 0 67 2 1 13 20 0 36 chain 553995 chr3 198022430 + 53955774 53961832 L1PA2 6032 - 1 6032 950 1669 0 1 751 1 2 1529 0 1 1456 30 0 622 chain 38239 chr3 198022430 + 53979918 53980385 LOR1a 498 + 9 491 71788 290 0 2 21 0 13 156 chain 4688 chr3 198022430 + 54000493 54000556 MER45C 884 - 720 784 198661 12 3 4 48 chain 75283 chr3 198022430 + 54011540 54012508 LTR5_Hs 974 - 0 974 45878 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 26356 chr3 198022430 + 54040930 54041222 AluYf5 307 - 15 307 98590 292 chain 26807 chr3 198022430 + 54051454 54051889 L1PA11 4918 + 4125 4517 96949 188 36 1 11 3 0 51 0 3 9 7 6 80 2 0 14 1 0 20 4 0 9 chain 4615 chr3 198022430 + 54104548 54104614 LTR10G 522 + 419 487 199465 27 3 5 36 chain 4454 chr3 198022430 + 54123232 54123305 MER65A 464 + 401 464 201302 12 14 0 34 0 4 13 chain 23488 chr3 198022430 + 54125243 54125525 AluY 311 + 11 288 113180 108 6 0 13 0 1 155 chain 6724 chr3 198022430 + 54133453 54133532 L1MA6 2487 - 278 357 179511 79 chain 31934 chr3 198022430 + 54258996 54259354 L1PA5 6144 - 14 372 80958 358 chain 6101 chr3 198022430 + 54269064 54269137 L1MC3 1789 + 1091 1164 184396 73 chain 7375 chr3 198022430 + 54276017 54276165 MER44B 551 - 39 186 174941 20 4 5 12 5 7 5 3 0 28 4 0 42 1 4 24 chain 9046 chr3 198022430 + 54290314 54290439 MER85 139 + 5 139 165338 87 1 11 24 1 0 12 chain 77009 chr3 198022430 + 54298861 54311974 L1PA7 6471 - 249 1827 44960 435 11934 391 447 1 0 99 4 5 168 0 8 25 chain 20636 chr3 198022430 + 54299303 54299558 L1PA7 6471 + 6198 6456 125168 114 8 10 21 0 1 112 chain 86714 chr3 198022430 + 54311974 54312998 L1PA7 6471 + 5415 6447 40875 65 1 0 134 0 3 134 6 7 123 0 3 115 2 4 444 chain 10831 chr3 198022430 + 54318185 54318305 L1PA4 6152 + 6032 6152 156859 120 chain 542883 chr3 198022430 + 54318982 54325093 L1PA4 6152 + 12 6151 2359 568 1 0 219 0 1 979 0 2 571 0 2 714 0 4 417 0 1 450 0 1 16 0 2 176 0 13 1848 5 7 140 0 1 7 chain 16576 chr3 198022430 + 54327250 54327602 L1PB1 5432 - 10 327 136720 18 1 0 12 1 0 22 1 0 24 2 0 12 11 8 18 16 6 6 2 0 16 2 1 41 2 1 16 3 1 52 2 0 9 5 1 12 1 0 12 1 0 17 4 1 11 chain 48923 chr3 198022430 + 54347946 54348744 L1PB1 5432 - 10 765 59795 18 1 0 13 4 3 18 1 0 24 2 0 15 1 0 4 2 0 19 33 12 16 1 0 31 0 1 11 1 0 16 2 1 52 2 0 9 5 1 12 12 9 23 1 0 6 9 8 47 13 13 236 1 0 137 chain 12593 chr3 198022430 + 54351431 54352058 MSTD 398 - 79 398 149865 95 1 0 5 19 22 12 354 45 29 51 47 5 0 3 56 chain 42508 chr3 198022430 + 54369225 54369749 MER41A 554 - 5 532 66005 121 0 1 54 0 1 279 11 12 59 chain 43173 chr3 198022430 + 54378755 54379315 MER41A 554 + 0 554 65205 24 0 1 136 1 0 95 3 0 187 6 3 108 chain 2438 chr3 198022430 + 54422976 54423002 L1MC4 1079 + 285 311 233882 26 chain 561793 chr3 198022430 + 54428349 54434350 L1HS 6032 - 0 6029 297 54 0 4 240 0 6 5245 0 18 462 chain 3496 chr3 198022430 + 54438957 54438998 L1MA6 2487 + 1001 1042 215413 41 chain 4031 chr3 198022430 + 54461602 54461652 MER53 195 - 145 195 206907 50 chain 59572 chr3 198022430 + 54470186 54470923 L1PA8 5853 + 5075 5805 53067 450 1 0 39 1 0 44 2 0 68 4 3 61 2 1 19 1 0 45 chain 104598 chr3 198022430 + 54474514 54475703 L1PA4 6152 - 0 1186 35598 869 0 1 276 4 0 40 chain 2749 chr3 198022430 + 54484383 54484445 MLT1C-int 1263 - 41 101 229502 13 15 14 18 1 0 15 chain 552341 chr3 198022430 + 54492800 54498942 L1PA3long 6157 - 0 6147 1156 18 1 0 315 0 1 839 1 0 349 1 0 2044 0 2 1076 0 2 176 0 2 51 0 2 36 2 1 1233 chain 523206 chr3 198022430 + 54502162 54508579 L1PA7 6471 + 0 6464 4849 97 3 4 157 6 7 97 0 1 4 7 6 25 0 3 2 0 2 10 2 1 4 0 1 34 8 7 285 0 3 480 1 5 61 5 1 1026 3 0 196 0 2 31 8 28 306 0 4 196 7 16 380 4 5 14 1 0 28 0 1 283 0 4 405 0 1 115 0 1 54 7 17 408 0 4 792 8 7 149 14 0 694 chain 26348 chr3 198022430 + 54512995 54513381 THE1C 375 + 0 375 98622 50 36 20 35 1 2 35 0 4 35 0 1 168 1 0 25 chain 12030 chr3 198022430 + 54528689 54528826 THE1D 372 - 0 138 152075 33 0 1 104 chain 26213 chr3 198022430 + 54546819 54547163 THE1B 368 - 1 368 99152 48 5 13 132 1 0 60 6 7 48 0 15 44 chain 23550 chr3 198022430 + 54576077 54576376 AluSc5 308 - 9 298 112852 8 10 0 281 chain 35497 chr3 198022430 + 54576386 54576887 MLT2A2 560 - 53 552 75561 299 39 40 23 0 1 12 3 0 34 1 0 90 chain 45312 chr3 198022430 + 54594986 54595652 L1PA13 3608 - 120 774 62705 22 1 0 18 8 4 48 2 0 10 6 5 19 0 1 22 6 5 60 2 0 35 4 5 74 1 0 28 1 0 82 1 0 216 chain 18995 chr3 198022430 + 54595863 54596172 THE1B 368 - 61 368 130122 67 1 0 10 1 0 16 48 53 54 5 0 107 chain 3504 chr3 198022430 + 54636145 54636232 MER45A 178 - 0 87 215305 19 25 0 8 2 27 33 chain 40769 chr3 198022430 + 54668510 54668961 LTR7 482 - 0 482 68216 196 1 32 254 chain 287510 chr3 198022430 + 54670208 54673777 HERVH-int 3825 - 0 3825 14188 225 0 2 149 1 4 6 3 0 110 3 211 37 9 11 479 0 1 6 1 0 476 0 2 81 0 10 299 15 42 451 15 0 384 0 2 56 0 3 12 0 2 7 0 1 30 1 0 6 9 51 13 1 0 25 3 0 12 1 0 15 29 0 24 1 0 9 2 1 38 5 0 10 23 22 11 2 0 81 7 22 386 chain 41285 chr3 198022430 + 54673779 54674231 LTR7 482 - 0 482 67550 198 0 30 254 chain 26428 chr3 198022430 + 54690926 54691324 LTR7 482 - 0 482 98309 94 0 2 62 0 10 34 25 56 77 0 3 29 23 61 54 chain 10277 chr3 198022430 + 54720179 54720327 MER58A 224 + 37 186 159247 82 8 9 58 chain 61407 chr3 198022430 + 54727336 54728401 Tigger3b 1229 + 60 1165 52149 21 0 1 4 1 0 5 31 35 48 12 14 53 4 14 21 0 4 48 16 15 35 1 2 186 4 0 12 0 1 21 1 14 6 4 0 46 3 5 39 0 1 9 19 28 17 13 11 30 7 17 39 4 0 7 1 5 88 11 12 73 0 2 73 13 4 39 chain 156522 chr3 198022430 + 54755817 54757866 L1P3 4156 - 2071 4152 23795 46 0 1 441 0 3 318 8 27 350 4 0 6 7 11 138 0 5 165 3 0 42 13 14 48 1 0 68 0 1 81 1 0 26 37 43 7 0 1 239 chain 327417 chr3 198022430 + 54757867 54761932 L1PA7 6471 + 2376 6457 12296 196 0 2 64 2 3 489 3 1 259 0 4 176 0 4 610 6 7 380 5 7 515 2 0 241 0 29 8 29 0 227 14 21 689 16 15 134 chain 507046 chr3 198022430 + 54836642 54842238 L1PA3long 6157 + 548 6153 6390 194 1 0 673 0 5 972 0 4 5 0 1 3751 chain 29335 chr3 198022430 + 54843338 54843644 AluYb8 318 - 12 318 87377 306 chain 25971 chr3 198022430 + 54863912 54864269 AluSg7 307 - 0 307 100133 102 50 0 205 chain 8434 chr3 198022430 + 54943570 54943730 MER30 238 + 0 177 168656 15 35 47 46 4 9 60 chain 6670 chr3 198022430 + 55010351 55010426 L1PA3long 6157 + 5990 6065 179908 75 chain 8011 chr3 198022430 + 55010427 55010517 L1PA3long 6157 + 6065 6155 170988 90 chain 44660 chr3 198022430 + 55011763 55012315 MER41A 554 - 0 554 63423 360 0 1 28 0 1 164 chain 4350 chr3 198022430 + 55025190 55025242 MER45B 1037 - 15 67 202594 52 chain 37495 chr3 198022430 + 55030787 55031209 L1PA7 6471 + 6048 6470 72815 422 chain 548686 chr3 198022430 + 55080131 55086156 L1PA2 6032 - 4 6031 1619 395 0 3 1826 1 0 3068 1 0 480 1 0 109 0 1 69 4 5 71 chain 220055 chr3 198022430 + 55132664 55135091 L1PA4 6152 + 3721 6152 17876 1583 0 4 844 chain 550168 chr3 198022430 + 55170356 55176378 L1PA2 6032 + 0 6032 1426 1309 0 8 881 1 0 4 0 1 1605 1 0 1822 0 3 399 chain 54904 chr3 198022430 + 55227750 55228570 L1MA2 4263 - 150 954 55768 8 1 0 30 1 0 17 7 0 92 1 0 9 2 1 150 16 13 131 1 0 17 10 12 32 21 18 29 0 1 192 7 6 46 chain 5950 chr3 198022430 + 55234870 55234959 MER5A 189 - 103 189 185676 39 7 1 6 0 3 37 chain 542158 chr3 198022430 + 55243159 55249297 L1PA4 6152 + 0 6151 2475 231 0 1 944 0 1 59 1 0 965 0 2 483 2 1 40 0 2 563 0 1 77 0 2 117 0 4 632 1 0 24 0 3 1999 chain 5231 chr3 198022430 + 55282760 55282817 MER11D 897 - 0 57 192717 57 chain 73598 chr3 198022430 + 55282829 55283702 MER11D 897 - 0 897 46731 112 1 2 165 4 27 591 chain 286919 chr3 198022430 + 55294850 55298270 HERVL-int 5654 + 0 3439 14227 56 5 6 187 0 4 1269 6 7 109 0 1 266 0 2 173 0 9 79 0 1 217 0 1 156 1 0 151 10 9 63 0 1 118 0 1 523 1 0 30 chain 9366 chr3 198022430 + 55308111 55308276 L1PB1 5432 + 5282 5427 163728 14 2 0 15 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 4735 chr3 198022430 + 55320372 55320460 MLT1J2 417 + 231 333 198114 26 4 5 35 7 20 16 chain 4178 chr3 198022430 + 55361689 55361863 MLT1H 522 + 97 283 204853 42 112 124 20 chain 8228 chr3 198022430 + 55388102 55388240 THE1C 375 + 34 172 169791 72 11 10 24 9 10 22 chain 29003 chr3 198022430 + 55388570 55388884 L1PA3long 6157 - 8 322 88974 314 chain 46125 chr3 198022430 + 55393093 55393640 MER41A 554 + 0 547 61920 547 chain 3102 chr3 198022430 + 55399698 55399731 Tigger3c 601 + 58 91 222904 33 chain 4817 chr3 198022430 + 55409061 55409193 MIRb 242 - 3 141 197149 30 61 67 41 chain 3316 chr3 198022430 + 55410971 55411070 MLT1K 546 - 106 201 218661 22 50 46 27 chain 532974 chr3 198022430 + 55422767 55428856 L1PA4 6152 + 2 6152 3853 97 0 1 27 0 14 1720 0 1 14 0 2 655 0 3 554 0 28 167 4 1 230 1 0 1587 0 15 186 0 4 273 2 0 416 7 8 142 2 0 5 chain 36535 chr3 198022430 + 55432624 55433127 L1PREC2 3366 - 522 1027 74191 37 14 11 44 2 0 274 1 0 52 0 9 16 1 0 62 chain 18366 chr3 198022430 + 55433127 55433519 L1PA14 3548 + 3088 3447 131889 21 9 5 17 2 0 6 1 0 52 0 13 19 1 0 44 33 8 24 8 1 33 19 18 30 4 2 12 5 3 19 1 0 32 chain 18046 chr3 198022430 + 55435831 55436110 L1PA8 5853 + 5580 5853 132743 28 2 0 70 20 11 6 0 7 38 2 1 19 1 0 93 chain 47402 chr3 198022430 + 55466379 55467094 L1PA11 4918 + 3868 4564 60899 445 0 4 9 5 1 5 1 0 24 1 2 31 23 20 65 2 0 13 2 1 10 0 1 9 4 0 9 31 22 15 1 0 10 chain 21662 chr3 198022430 + 55485223 55485560 THE1C 375 - 25 363 121538 122 1 2 18 24 22 100 16 18 56 chain 5473 chr3 198022430 + 55499196 55499292 MER20 218 + 97 200 190276 34 24 31 38 chain 39922 chr3 198022430 + 55657408 55657944 LTR10A 586 + 0 565 69431 141 2 0 67 0 29 37 8 9 135 1 4 81 8 6 56 chain 3242 chr3 198022430 + 55758557 55758630 MIRb 242 + 110 182 220178 19 24 23 30 chain 109077 chr3 198022430 + 55772790 55774067 L1PA7 6471 - 4 1282 34429 6 4 0 117 0 1 204 0 1 505 0 1 16 0 2 425 chain 28337 chr3 198022430 + 55778489 55778858 MER51A 677 + 282 661 91812 44 0 7 69 0 11 170 8 0 78 chain 37317 chr3 198022430 + 55783451 55783966 LTR12F 595 + 0 595 73065 47 40 0 44 5 124 149 0 1 230 chain 12470 chr3 198022430 + 55796010 55796186 THE1D 372 + 194 372 150377 12 17 18 91 0 1 56 chain 51909 chr3 198022430 + 55804651 55805294 L1PA7 6471 - 5 620 57678 7 2 0 34 28 1 114 1 2 457 chain 22893 chr3 198022430 + 55832348 55832640 AluSc8 310 + 11 299 116137 19 7 0 102 0 3 164 chain 533548 chr3 198022430 + 55865654 55871783 L1PA4 6152 + 8 6143 3759 109 0 4 455 1 0 132 12 5 616 0 3 5 10 7 90 1 0 1747 0 11 323 2 0 2069 0 1 422 1 2 134 chain 19823 chr3 198022430 + 55875211 55875551 THE1B 368 + 6 348 127741 57 12 10 96 67 71 108 chain 22879 chr3 198022430 + 55940222 55940481 AluY 311 + 0 304 116187 16 0 44 72 0 1 171 chain 118511 chr3 198022430 + 55964398 55965791 L1PA7 6471 + 5076 6469 31615 538 0 2 80 7 8 7 1 0 748 2 0 10 chain 28896 chr3 198022430 + 55976305 55976624 AluYa5 310 - 0 310 89467 178 9 0 132 chain 7938 chr3 198022430 + 55986065 55986164 FLAM_A 137 + 18 119 171399 60 0 2 39 chain 38564 chr3 198022430 + 56006301 56006790 L1PA8 5853 - 0 483 71349 93 1 0 16 1 0 52 1 0 12 1 0 72 2 0 46 1 0 38 3 4 150 chain 3014 chr3 198022430 + 56090189 56090435 LTR83 644 + 8 261 224746 30 152 157 14 3 0 6 25 30 16 chain 2609 chr3 198022430 + 56091230 56091280 L1MB3 1562 - 12 61 231581 16 11 10 23 chain 3948 chr3 198022430 + 56098852 56098894 MER58A 224 + 42 84 208163 42 chain 172831 chr3 198022430 + 56101011 56103197 L1PA10 4194 - 34 2229 21730 10 1 0 34 9 0 249 0 1 51 0 5 48 0 1 146 0 6 126 0 3 338 0 7 11 7 1 93 7 8 313 0 1 4 1 0 26 1 5 10 10 0 29 0 1 266 0 3 138 0 4 205 1 0 52 chain 73946 chr3 198022430 + 56195391 56196442 L1PA16 3655 - 1364 2436 46543 143 17 20 19 1 0 100 9 8 118 11 21 8 0 2 57 1 0 5 0 3 327 0 1 86 17 19 60 0 3 72 chain 13727 chr3 198022430 + 56199350 56199505 L1PA3long 6157 - 0 155 145521 155 chain 12173 chr3 198022430 + 56212983 56213169 MER30 238 - 0 195 151525 24 18 15 76 5 17 63 chain 4240 chr3 198022430 + 56227735 56227803 MIR 256 - 104 172 204008 22 3 0 5 0 4 4 1 0 33 chain 6231 chr3 198022430 + 56228506 56228582 Tigger3c 601 - 273 349 183315 76 chain 3876 chr3 198022430 + 56234980 56235028 MIRb 242 - 1 49 209210 48 chain 129120 chr3 198022430 + 56245121 56247091 L1PB1 5432 + 3457 5326 28286 82 11 12 169 9 7 143 20 24 68 6 5 89 2 1 284 0 7 146 30 21 31 1 0 162 1 0 303 5 8 79 6 7 9 80 0 20 1 0 8 3 2 12 2 0 3 2 0 9 2 0 51 1 0 12 6 5 39 0 1 5 11 1 12 20 17 15 chain 530911 chr3 198022430 + 56247097 56253172 L1PA4 6152 + 40 6151 4092 760 25 36 267 0 11 734 0 1 1421 0 1 335 0 2 489 0 2 306 0 2 1306 0 1 284 3 5 35 0 1 104 0 2 6 chain 5852 chr3 198022430 + 56276066 56276137 L1PB2 3958 + 3768 3838 186664 7 1 0 63 chain 4289 chr3 198022430 + 56280314 56280360 MER20 218 - 66 112 203360 46 chain 8190 chr3 198022430 + 56354091 56354202 MER57F 435 - 76 189 170010 25 3 0 5 0 3 73 0 2 5 chain 2878 chr3 198022430 + 56364647 56364740 Tigger4a 237 - 114 207 227408 27 49 49 17 chain 36884 chr3 198022430 + 56387422 56387836 L1PA5 6144 + 5723 6137 73676 414 chain 13131 chr3 198022430 + 56399203 56399491 Tigger3a 397 + 0 342 147721 28 107 161 153 chain 46670 chr3 198022430 + 56412104 56412612 L1PA2 6032 + 5524 6032 61478 508 chain 2855 chr3 198022430 + 56432946 56432980 MER53 195 - 157 191 227765 34 chain 14778 chr3 198022430 + 56435889 56436218 THE1B 368 - 32 368 142008 70 0 1 25 17 16 10 9 16 29 1 0 34 33 27 17 40 47 44 chain 30312 chr3 198022430 + 56472077 56472567 LOR1a 498 + 0 498 83877 44 0 1 24 0 1 93 76 78 91 12 13 79 0 3 71 chain 3311 chr3 198022430 + 56487228 56487263 MLT1I 406 + 104 139 218755 35 chain 9869 chr3 198022430 + 56488913 56489068 L1MB3 1562 + 1268 1425 161237 26 0 4 54 13 12 57 1 0 4 chain 62813 chr3 198022430 + 56513679 56514397 L1PA4 6152 - 9 719 51534 120 9 0 21 0 1 568 chain 58600 chr3 198022430 + 56514397 56515057 L1PA4 6152 + 4767 5427 53640 534 1 0 7 0 1 118 chain 40555 chr3 198022430 + 56530316 56530903 LTR22 571 + 0 568 68504 79 1 0 170 0 3 6 10 0 19 0 1 157 48 37 51 0 1 14 10 10 11 2 0 9 chain 14311 chr3 198022430 + 56538970 56539227 L1MA3 4352 + 543 788 143525 16 0 13 46 14 15 16 26 1 106 1 2 14 2 0 16 chain 5121 chr3 198022430 + 56542470 56542546 MER20 218 + 66 144 193861 18 7 9 51 chain 66591 chr3 198022430 + 56555459 56556362 L1PA8 5853 + 4969 5853 49834 37 7 8 14 43 7 164 1 0 162 1 0 38 1 19 146 1 0 45 2 0 70 2 0 15 0 7 39 2 1 19 3 2 25 1 0 54 0 1 11 chain 108192 chr3 198022430 + 56576716 56577921 L1HS 6032 - 2940 4146 34651 49 1 0 201 0 1 278 0 1 676 chain 80235 chr3 198022430 + 56577929 56578827 L1PA3long 6157 + 5258 6157 43492 73 7 8 818 chain 24532 chr3 198022430 + 56585441 56585738 AluY 311 + 0 292 107362 133 20 15 144 chain 14629 chr3 198022430 + 56602078 56602298 LTR49 580 - 344 563 142492 36 1 3 30 5 2 30 1 0 59 2 3 56 chain 514215 chr3 198022430 + 56610436 56616556 L1PA5 6144 - 0 6144 5754 332 0 1 39 24 9 386 1 0 290 9 15 5 0 3 114 5 0 502 0 3 101 1 9 479 7 6 412 0 3 265 2 0 240 0 1 1231 0 1 121 1 0 71 5 9 326 9 0 743 0 1 248 6 19 24 1 15 120 chain 144213 chr3 198022430 + 56617342 56619159 SVA_C 1631 - 16 1631 25438 621 93 0 154 40 0 93 80 0 722 1 12 13 chain 4283 chr3 198022430 + 56618008 56618056 SVA_C 1631 - 636 683 143925 36 1 0 11 chain 3264 chr3 198022430 + 56618210 56618250 SVA_C 1631 - 831 871 164870 40 chain 1306 chr3 198022430 + 56618372 56618411 SVA_C 1631 - 950 989 163329 39 chain 29055 chr3 198022430 + 56621922 56622473 L1PB1 5432 + 4917 5423 88736 93 8 10 83 18 5 6 1 0 24 1 0 9 17 12 9 3 1 51 2 1 15 1 0 45 1 0 15 25 12 19 7 4 15 2 0 26 1 0 19 1 0 13 1 0 14 1 0 5 chain 507563 chr3 198022430 + 56633903 56640768 L1PA7 6471 - 193 6471 6360 240 1 8 23 306 0 356 1 0 27 0 3 211 0 6 726 0 4 288 0 1 206 1 0 175 6 0 382 310 0 51 0 1 73 2 0 9 0 2 836 15 26 460 5 1 204 1 13 355 0 1 331 0 3 740 30 26 146 0 1 97 5 0 9 0 1 49 19 18 169 chain 272363 chr3 198022430 + 56642122 56646112 L1PBa1 4058 - 18 4048 15056 42 1 0 17 1 0 9 1 0 5 1 0 5 12 9 9 1 0 25 1 0 4 2 1 19 2 0 15 6 0 7 1 0 22 3 1 33 0 4 72 2 0 40 1 0 28 2 1 7 1 0 6 1 2 41 0 3 48 4 14 56 1 7 53 1 0 23 1 0 10 1 0 453 0 5 37 0 4 30 5 10 149 8 9 36 19 36 15 11 16 136 5 0 42 3 0 124 0 4 16 0 15 32 0 2 371 1 97 52 91 0 49 1 3 208 1 0 135 0 2 5 7 6 128 4 6 179 3 1 317 34 22 19 29 44 18 8 7 27 36 23 80 3 1 67 1 0 4 0 1 46 5 0 55 0 2 136 6 14 51 1 0 6 4 2 11 1 0 26 chain 23384 chr3 198022430 + 56721848 56722135 AluSp 311 - 4 290 113739 175 1 0 111 chain 112731 chr3 198022430 + 56725725 56727051 LTR12C 1709 + 0 1709 33468 262 0 1 226 1 0 161 0 278 184 1 0 5 3 1 106 0 4 118 0 2 92 0 1 12 1 102 154 chain 11297 chr3 198022430 + 56738865 56739128 L1MB2 1706 - 85 337 155067 10 1 0 13 1 0 13 68 54 104 19 24 34 chain 124144 chr3 198022430 + 56752779 56754246 LTR12C 1709 + 0 1709 29650 263 0 1 36 0 1 251 13 90 114 0 161 195 1 0 4 4 2 106 0 4 159 0 1 321 chain 15776 chr3 198022430 + 56799219 56799412 MER107 203 - 0 200 139035 35 3 10 155 chain 3553 chr3 198022430 + 56840080 56840119 HERV9-int 5642 - 1170 1209 214509 39 chain 16859 chr3 198022430 + 56848219 56848441 MER30 238 + 0 238 135945 109 4 20 109 chain 32486 chr3 198022430 + 56947716 56948275 L1PB1 5432 + 4866 5404 80053 193 0 2 5 0 8 25 17 15 24 1 0 9 1 0 9 1 0 3 2 0 10 3 1 49 3 2 16 1 0 42 2 1 16 3 0 11 10 1 19 26 21 22 1 0 21 1 0 13 chain 44666 chr3 198022430 + 56958421 56958954 MER41A 554 - 0 554 63415 146 0 21 387 chain 132268 chr3 198022430 + 56968311 56969859 LTR12C 1709 + 0 1709 27569 281 1 2 408 0 159 262 1 0 5 3 1 106 0 4 481 chain 28019 chr3 198022430 + 56978240 56978592 Tigger1 2417 + 1479 1831 92934 352 chain 543045 chr3 198022430 + 56979160 56985305 L1PA4 6152 + 1 6140 2332 419 13 2 873 0 1 2401 0 1 427 1 0 755 12 12 160 0 1 272 4 5 154 0 1 550 0 1 104 chain 8401 chr3 198022430 + 57030920 57031050 MER30 238 + 125 238 168851 13 15 1 53 3 0 46 chain 3443 chr3 198022430 + 57047464 57047506 LTR12C 1709 + 1118 1160 216322 42 chain 4126 chr3 198022430 + 57047723 57047828 LTR12C 1709 + 654 718 205570 17 46 5 42 chain 70767 chr3 198022430 + 57061971 57062733 L1PA2 6032 + 5270 6032 48030 762 chain 24330 chr3 198022430 + 57092509 57092773 L1PA4 6152 + 5479 5743 108488 264 chain 36889 chr3 198022430 + 57092773 57093180 L1PA4 6152 + 5744 6152 73673 294 0 1 113 chain 5131 chr3 198022430 + 57122663 57122820 MIRb 242 + 48 202 193764 17 31 31 37 41 38 31 chain 30486 chr3 198022430 + 57206381 57206767 L1PB1 5432 - 332 700 83458 87 26 0 198 0 8 75 chain 4556 chr3 198022430 + 57216464 57216511 MER52C 1267 - 213 260 200158 47 chain 6592 chr3 198022430 + 57243152 57243230 MER3 215 + 55 133 180518 78 chain 16128 chr3 198022430 + 57246825 57247016 L1PA6 6164 - 2 194 137972 155 1 2 35 chain 185724 chr3 198022430 + 57297766 57300731 L1MA2 4263 - 221 2858 20442 21 28 0 56 11 9 35 0 1 114 3 0 55 0 3 5 1 2 31 0 3 45 2 1 76 13 12 309 62 6 203 8 1 41 3 0 97 7 8 133 0 1 39 315 0 28 0 3 56 1 0 4 1 0 86 1 5 30 0 2 19 3 0 56 44 103 98 1 0 16 1 0 259 1 0 37 0 1 374 0 4 9 5 11 14 7 15 18 1 0 82 chain 30395 chr3 198022430 + 57337829 57338277 LTR7 482 + 0 469 83689 101 20 14 115 0 31 19 1 0 85 1 2 15 6 0 37 12 14 36 chain 289439 chr3 198022430 + 57338292 57341944 HERVH-int 3825 + 0 3825 14057 157 2 1 174 1 0 32 16 16 91 12 242 15 22 1 40 58 0 9 0 1 123 0 1 323 15 0 208 20 11 25 1 0 10 0 1 204 4 31 358 0 1 769 0 1 99 0 2 127 4 7 44 0 4 24 0 7 249 37 38 379 chain 2326 chr3 198022430 + 57338854 57338898 HERVH-int 3825 + 503 604 224767 18 10 67 16 chain 27361 chr3 198022430 + 57350597 57350981 THE1D 372 + 0 372 95074 75 19 0 53 0 4 53 5 8 179 chain 553812 chr3 198022430 + 57358611 57364749 L1PA3long 6157 + 1 6157 970 284 0 1 667 0 2 234 0 3 209 0 9 1226 1 2 624 2 1 440 0 1 2446 0 2 5 chain 109462 chr3 198022430 + 57372053 57373421 SVA_A 1864 + 15 1864 34327 179 7 8 139 1 147 91 0 74 110 10 83 27 4 1 12 1 0 105 1 0 4 0 1 24 7 5 71 38 231 537 chain 89481 chr3 198022430 + 57377211 57378241 LTR5A 1029 + 0 1029 39811 147 1 0 882 chain 60971 chr3 198022430 + 57382975 57384303 L1PB1 5432 + 4436 5422 52347 173 0 4 15 5 0 176 0 9 155 0 3 33 13 15 84 17 15 20 1 0 4 3 2 13 6 2 9 313 0 32 33 21 16 2 1 38 6 5 20 18 7 18 9 6 12 2 0 26 1 0 22 1 0 12 1 0 14 1 0 4 chain 17926 chr3 198022430 + 57424144 57424397 L1PA16 3655 + 1727 1984 133043 68 1 0 7 13 17 83 0 1 81 chain 141588 chr3 198022430 + 57433841 57435637 LTR12C 1709 - 0 1709 25884 249 103 0 65 0 10 8 0 2 147 0 4 4 0 1 63 1 2 36 3 1 5 1 0 143 0 1 131 1 0 27 0 1 809 chain 4650 chr3 198022430 + 57437013 57437074 MER53 195 + 1 63 199060 49 1 2 11 chain 37456 chr3 198022430 + 57454967 57455502 L1PA16 3655 + 3008 3534 72882 22 0 1 55 9 0 15 2 11 28 9 1 60 1 0 61 0 1 23 8 6 242 chain 6043 chr3 198022430 + 57455873 57455953 U13_ 108 - 5 83 184863 48 2 0 30 chain 23277 chr3 198022430 + 57460417 57460712 AluSc 308 + 14 290 114310 121 19 0 155 chain 545565 chr3 198022430 + 57462665 57468808 L1PA4 6152 + 0 6151 2002 125 19 5 12 11 25 2034 0 2 14 0 1 44 0 1 626 0 1 798 0 2 2345 0 1 115 chain 63497 chr3 198022430 + 57470141 57471041 L1PB2 3958 + 2928 3838 51245 89 7 24 266 2 0 54 1 0 13 5 0 57 19 20 94 1 0 48 0 2 22 1 0 64 6 5 44 0 5 18 2 0 9 1 0 13 1 0 63 chain 5990 chr3 198022430 + 57479403 57479475 HY1 111 + 10 82 185330 72 chain 24352 chr3 198022430 + 57489121 57489412 AluSc5 308 - 16 307 108364 291 chain 8227 chr3 198022430 + 57490992 57491088 L1MA3 4352 - 259 355 169794 96 chain 7957 chr3 198022430 + 57498176 57498282 U6 107 + 0 107 171291 75 4 5 27 chain 50476 chr3 198022430 + 57498282 57499205 L1PA8A 6298 + 5673 6291 58660 291 305 0 327 chain 4839 chr3 198022430 + 57512158 57512216 MER41A 554 - 98 156 196897 58 chain 25375 chr3 198022430 + 57513747 57514054 AluSp 311 - 14 311 102804 7 10 0 290 chain 38229 chr3 198022430 + 57515917 57517206 L1M1 2793 - 704 1309 71802 4 0 1 12 11 9 53 712 0 20 4 11 37 0 5 46 1 0 193 21 32 61 0 2 48 4 9 62 chain 2785 chr3 198022430 + 57531721 57531764 LTR25 836 + 501 557 228922 29 1 14 13 chain 12960 chr3 198022430 + 57549083 57549232 L1PA6 6164 - 2 151 148393 149 chain 23192 chr3 198022430 + 57560583 57560868 AluSp 311 - 20 303 114711 117 1 0 76 1 0 90 chain 10496 chr3 198022430 + 57571231 57571351 L1PA5 6144 + 6022 6142 158264 120 chain 3131 chr3 198022430 + 57574381 57574416 AluSp 311 + 83 118 222339 35 chain 24190 chr3 198022430 + 57574558 57574844 AluSp 311 + 11 297 109271 286 chain 38443 chr3 198022430 + 57584665 57585137 MER4A1 472 - 0 472 71525 472 chain 489367 chr3 198022430 + 57592522 57598127 L1PA5 6144 + 3 6143 7392 86 0 525 334 8 12 72 0 1 173 0 1 200 3 8 16 0 2 15 0 1 86 5 0 1152 0 3 474 2 1 5 1 0 75 0 4 1577 0 3 450 8 7 387 8 2 468 chain 26377 chr3 198022430 + 57599356 57599654 AluY 311 + 11 309 98502 298 chain 29023 chr3 198022430 + 57617443 57617748 AluYk12 309 - 4 309 88892 305 chain 131821 chr3 198022430 + 57633727 57636007 L1PB1 5432 + 3451 5422 27669 90 7 10 143 0 8 21 5 9 195 23 7 363 1 0 4 0 1 83 19 18 42 1 2 27 4 13 82 3 2 25 10 14 16 3 0 79 1 3 283 9 6 91 314 27 23 1 0 8 1 0 14 14 8 19 0 4 29 2 1 15 1 0 44 1 0 15 4 0 7 15 6 7 1 0 11 3 1 5 1 0 9 8 6 23 1 0 22 1 0 12 1 0 18 chain 7873 chr3 198022430 + 57658976 57659150 L1MA4 2864 + 2515 2692 171851 28 16 28 71 40 31 19 chain 36780 chr3 198022430 + 57672161 57672743 Tigger1 2417 + 1 592 73827 9 15 0 17 15 32 63 0 2 180 3 6 87 27 26 73 9 8 59 0 4 25 chain 18902 chr3 198022430 + 57693278 57693546 L1MA3 4352 + 3819 4093 130360 58 5 7 107 1 3 61 0 2 26 1 0 4 0 1 5 chain 25895 chr3 198022430 + 57693882 57694188 AluSp 311 - 5 311 100459 306 chain 12175 chr3 198022430 + 57698629 57698872 MER50 708 - 319 498 151515 16 10 9 38 61 0 37 2 0 79 chain 3077 chr3 198022430 + 57706319 57706417 MER68 562 + 176 244 223374 22 36 10 15 6 2 19 chain 25079 chr3 198022430 + 57708945 57709238 AluSp 311 + 5 301 104409 86 0 3 207 chain 25522 chr3 198022430 + 57722211 57722503 AluSp 311 - 9 301 102128 292 chain 135516 chr3 198022430 + 57732712 57734504 SVA_F 1814 + 335 1813 26923 549 325 0 63 0 15 39 2 0 176 1 0 10 1 0 626 chain 13672 chr3 198022430 + 57733266 57733496 SVA_F 1814 + 888 1084 80800 25 49 0 35 3 18 118 chain 2205 chr3 198022430 + 57733314 57733340 SVA_F 1814 + 937 1104 140092 6 1 0 4 0 142 15 chain 5867 chr3 198022430 + 57733501 57733579 SVA_F 1814 + 962 1038 186518 49 6 4 23 chain 25534 chr3 198022430 + 57740714 57741015 AluSp 311 - 12 311 102083 17 3 0 5 0 2 231 2 1 43 chain 29739 chr3 198022430 + 57747492 57747801 AluYb8 318 + 0 309 85693 309 chain 4146 chr3 198022430 + 57759043 57759231 MER6C 202 - 26 202 205291 18 112 103 36 3 0 19 chain 14344 chr3 198022430 + 57762830 57762986 L1PA3long 6157 + 6001 6157 143403 156 chain 35796 chr3 198022430 + 57774901 57775390 MER31A 484 - 7 484 75140 44 0 1 47 0 6 6 17 0 16 0 1 227 1 0 35 2 0 94 chain 2798 chr3 198022430 + 57781685 57781720 L1MB7 1623 - 723 757 228754 30 1 0 4 chain 201475 chr3 198022430 + 57791781 57794750 L1PA8 5853 - 0 3767 19109 32 5 6 54 2 1 19 3 2 44 12 11 5 1 0 71 2 0 22 1 5 17 1 0 79 312 0 474 0 2 109 19 1088 14 1 2 92 0 3 80 0 1 197 0 16 28 4 8 150 0 1 12 1 0 129 1 2 18 0 5 73 0 8 82 4 3 280 0 4 164 3 0 162 0 4 116 2 0 72 chain 70798 chr3 198022430 + 57808956 57809735 L1PA4 6152 - 9 788 48013 9 1 0 171 0 1 598 chain 11899 chr3 198022430 + 57841146 57841292 Tigger3b 1229 - 294 440 152611 146 chain 14843 chr3 198022430 + 57843017 57843254 MER44A 345 - 26 263 141802 81 2 0 54 0 7 36 6 0 20 13 1 9 0 10 10 0 3 6 chain 36396 chr3 198022430 + 57854482 57855178 MLT2A1 477 - 0 477 74369 67 3 0 9 232 16 44 0 1 136 0 1 21 0 1 11 5 2 168 chain 24196 chr3 198022430 + 57870798 57871085 AluSp 311 - 11 300 109238 241 0 2 46 chain 24371 chr3 198022430 + 57895351 57895638 AluSp 311 - 24 311 108246 287 chain 24054 chr3 198022430 + 57901609 57901897 AluSp 311 + 8 296 110021 288 chain 21547 chr3 198022430 + 57953318 57953589 MER50 708 - 23 293 121975 63 1 0 207 chain 13506 chr3 198022430 + 57990763 57990960 Tigger3 1187 + 713 906 146347 19 3 0 9 7 0 3 0 6 48 1 0 101 0 1 6 chain 5263 chr3 198022430 + 58034763 58034832 MER53 195 - 5 83 192379 15 0 9 54 chain 23264 chr3 198022430 + 58040128 58040482 THE1C 375 - 0 366 114366 18 11 10 133 3 0 19 10 9 42 0 17 18 3 2 4 0 1 93 chain 3589 chr3 198022430 + 58041281 58041320 THE1C 375 - 336 375 213838 39 chain 22121 chr3 198022430 + 58043525 58043804 AluSp 311 - 20 300 119693 172 7 8 100 chain 2994 chr3 198022430 + 58052937 58052972 MER117 194 - 95 130 225138 35 chain 24895 chr3 198022430 + 58076525 58076821 AluY 311 + 9 299 105374 44 7 0 79 0 1 166 chain 11069 chr3 198022430 + 58093746 58093964 MER30 238 - 0 230 155932 41 3 0 32 60 75 82 chain 15853 chr3 198022430 + 58119886 58120124 MER1B 344 + 95 344 138793 125 4 0 33 28 43 48 chain 3839 chr3 198022430 + 58144679 58144726 MIRb 242 - 101 148 209795 47 chain 40501 chr3 198022430 + 58187085 58187701 LTR10E 629 + 0 629 68589 15 3 1 144 17 14 49 22 0 8 0 18 21 1 27 79 0 1 34 3 1 145 32 30 36 1 0 6 chain 59051 chr3 198022430 + 58213896 58214789 L1PB1 5432 + 4579 5427 53364 47 2 0 76 3 5 90 2 1 305 0 3 5 24 11 12 1 0 8 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 2 10 0 25 4 0 9 1 0 14 2 0 23 6 5 18 2 1 11 1 0 18 2 0 5 chain 23769 chr3 198022430 + 58216241 58216528 AluSc5 308 - 11 297 111659 166 1 0 120 chain 5684 chr3 198022430 + 58226790 58226889 MER20 218 + 65 177 188256 15 9 20 54 4 6 17 chain 51489 chr3 198022430 + 58228459 58229060 L1PA6 6164 - 8 609 57976 601 chain 4395 chr3 198022430 + 58245699 58245865 L1MB7 1623 - 91 229 201995 14 3 0 19 30 24 16 48 30 7 1 0 28 chain 38114 chr3 198022430 + 58259142 58259617 L1PA8 5853 + 5384 5853 71963 225 2 0 69 2 1 9 1 0 56 1 0 16 1 0 93 chain 516739 chr3 198022430 + 58261385 58267455 L1PA6 6164 - 12 6164 5513 148 6 33 144 0 1 516 4 6 405 0 1 255 1 0 281 0 4 135 5 7 427 1 6 161 0 4 202 0 1 225 0 1 745 0 3 103 0 1 118 0 8 120 0 1 331 0 1 934 0 17 155 2 3 79 5 4 47 0 2 298 0 1 55 1 2 161 chain 177844 chr3 198022430 + 58274962 58277150 SVA_D 2077 - 0 2071 21179 312 1 0 345 78 0 19 9 8 4 0 1 302 1 0 32 0 1 18 2 1 5 74 0 71 26 62 667 0 1 222 chain 6711 chr3 198022430 + 58275620 58275698 SVA_D 2077 - 882 960 80140 78 chain 4205 chr3 198022430 + 58276107 58276164 SVA_D 2077 - 891 948 83061 57 chain 3162 chr3 198022430 + 58286940 58286975 MER53 195 - 160 195 221707 35 chain 12849 chr3 198022430 + 58307450 58307782 LTR49 580 - 0 352 148848 93 158 177 61 0 1 20 chain 23238 chr3 198022430 + 58326181 58326465 AluSp 311 + 10 295 114501 186 0 1 98 chain 9914 chr3 198022430 + 58334182 58334319 MER33 330 - 0 150 160998 26 2 10 80 0 5 29 chain 3709 chr3 198022430 + 58343334 58343381 Tigger3b 1229 - 1121 1167 211822 22 1 0 24 chain 6764 chr3 198022430 + 58354351 58354432 MER39 703 - 616 699 179216 59 0 2 22 chain 24721 chr3 198022430 + 58355273 58355573 AluSp 311 + 4 304 106323 14 1 0 69 0 1 216 chain 34181 chr3 198022430 + 58404646 58405430 MER39B 650 - 61 540 77376 10 9 0 195 1 2 35 0 1 24 0 1 56 308 3 40 0 6 49 0 1 23 1 0 33 chain 2840 chr3 198022430 + 58415186 58415218 MER57D 437 - 76 108 228080 32 chain 35227 chr3 198022430 + 58420307 58420759 LTR2 463 - 0 463 75888 88 12 13 133 3 8 74 0 1 12 0 4 130 chain 44828 chr3 198022430 + 58421919 58422472 MER41A 554 - 0 554 63261 461 5 6 87 chain 111302 chr3 198022430 + 58422481 58424744 MER41-int 2638 - 2 2347 33859 144 0 4 34 2 3 223 7 9 40 391 4 6 0 4 117 1 0 135 317 2 34 3 1 24 0 14 299 1 0 27 0 1 18 0 2 3 0 760 12 0 1 25 1 0 142 1 0 17 20 0 8 1 21 42 6 10 69 11 8 82 chain 9880 chr3 198022430 + 58425231 58425581 MER41A 554 - 130 480 78395 350 chain 61804 chr3 198022430 + 58425619 58426345 LTR17 781 - 53 779 51994 77 0 1 323 1 0 325 chain 2004 chr3 198022430 + 58426347 58426418 MER41A 554 - 481 552 78395 71 chain 31519 chr3 198022430 + 58426643 58427097 LTR7 482 - 0 482 81613 49 12 14 52 1 2 70 1 32 146 23 17 100 chain 28596 chr3 198022430 + 58436083 58436469 LTR7B 505 + 0 491 90750 108 0 10 33 4 101 28 0 1 8 1 0 76 1 0 76 14 13 37 chain 6160 chr3 198022430 + 58438706 58438778 Tigger2 2703 - 1571 1643 183903 72 chain 24625 chr3 198022430 + 58447737 58448029 AluSp 311 - 9 301 106857 292 chain 3685 chr3 198022430 + 58526053 58526096 MER51D 577 + 534 577 212164 43 chain 5576 chr3 198022430 + 58526929 58527037 L1MA8 2339 - 60 156 189312 13 5 2 8 1 0 23 2 0 39 6 0 11 chain 166346 chr3 198022430 + 58534793 58536837 SVA_F 1814 - 0 1804 22480 601 51 0 251 205 15 49 1 0 10 0 2 876 chain 4131 chr3 198022430 + 58535394 58535445 SVA_F 1814 - 777 826 125125 32 1 0 11 1 0 6 chain 11668 chr3 198022430 + 58535696 58535901 SVA_F 1814 - 725 852 139771 80 98 20 27 chain 5350 chr3 198022430 + 58535814 58535874 SVA_F 1814 - 540 600 151365 60 chain 27045 chr3 198022430 + 58539048 58539363 THE1D-int 1627 - 0 315 96134 315 chain 3262 chr3 198022430 + 58546445 58546481 MLT1A 405 + 334 370 219756 36 chain 25188 chr3 198022430 + 58547752 58548135 LTR7 482 + 0 472 103806 70 0 7 10 0 50 87 40 71 70 1 2 105 chain 28829 chr3 198022430 + 58570336 58570750 MER51B 395 + 0 395 89767 34 31 13 193 1 0 10 0 1 5 2 1 138 chain 19072 chr3 198022430 + 58576193 58576564 THE1D 372 - 0 372 129900 32 1 0 27 7 8 27 39 40 14 13 14 14 29 27 6 0 1 162 chain 32212 chr3 198022430 + 58580995 58581406 LTR7B 505 + 0 441 80500 141 0 1 66 20 49 184 chain 23956 chr3 198022430 + 58629973 58630321 THE1B 368 + 0 367 110587 40 0 15 119 3 9 59 1 0 57 24 23 45 chain 6270 chr3 198022430 + 58654596 58654862 MLT1D 503 - 102 369 183002 15 86 89 52 59 56 20 11 12 23 chain 22742 chr3 198022430 + 58655153 58655419 AluY 311 + 16 283 116858 116 0 1 150 chain 456100 chr3 198022430 + 58659300 58664764 L1PA7 6471 - 4 6453 8540 9 2 0 334 4 16 143 0 1 257 10 12 70 1 4 176 0 1 69 0 12 336 1 0 273 0 948 275 5 2 198 0 1 644 0 1 38 6 7 39 0 1 6 1 0 11 0 2 106 5 6 147 8 2 498 0 2 168 1 2 42 0 1 250 0 1 674 1 6 175 0 1 90 1 0 9 0 3 175 1 0 205 chain 13965 chr3 198022430 + 58678421 58678615 LTR8 732 + 0 204 144688 19 0 1 12 9 18 154 chain 7869 chr3 198022430 + 58682358 58682455 Tigger1 2417 - 1373 1470 171878 97 chain 40622 chr3 198022430 + 58682455 58683000 MER41A 554 + 0 554 68403 184 23 33 103 8 7 227 chain 35403 chr3 198022430 + 58689976 58690404 LTR10C 591 + 0 438 75672 28 10 18 212 0 1 70 0 1 108 chain 2989 chr3 198022430 + 58692928 58692961 MER20 218 + 184 217 225252 33 chain 63197 chr3 198022430 + 58694603 58695408 LTR12D 1347 + 405 1347 51361 130 0 31 127 1 18 17 0 1 133 0 1 122 0 97 250 10 0 15 chain 29646 chr3 198022430 + 58701869 58702189 AluYb8 318 - 0 318 86086 192 2 0 126 chain 48288 chr3 198022430 + 58710006 58710566 LTR14 556 + 0 556 60252 531 4 0 25 chain 3598 chr3 198022430 + 58719051 58719092 L1PA4 6152 + 6111 6152 213675 41 chain 541905 chr3 198022430 + 58744275 58750395 L1PA4 6152 - 9 6150 2526 148 0 1 686 0 4 760 0 1 1366 1 0 2491 10 13 113 1 0 404 0 14 140 chain 40229 chr3 198022430 + 58756647 58757137 L1PA7 6471 + 5979 6470 68987 227 8 9 255 chain 26349 chr3 198022430 + 58772937 58773222 L1PA2 6032 + 5740 6025 98617 285 chain 49319 chr3 198022430 + 58773272 58773881 L1PA7 6471 + 5864 6469 59507 135 2 0 7 0 6 397 7 1 48 2 0 11 chain 3549 chr3 198022430 + 58774702 58774742 MER8 282 - 242 282 214546 40 chain 549861 chr3 198022430 + 58792311 58798441 L1PA3long 6157 + 6 6157 1464 562 0 4 543 0 3 1454 0 13 2378 0 4 8 4 0 387 0 1 794 chain 180380 chr3 198022430 + 58800041 58802004 L1PA3long 6157 + 3953 5915 20954 1354 1 0 608 chain 555000 chr3 198022430 + 58802004 58808030 L1PA2 6032 + 1 6028 826 352 0 1 5674 chain 22921 chr3 198022430 + 58808069 58808325 L1PA2 6032 + 5775 6031 116008 256 chain 26975 chr3 198022430 + 58812040 58812366 L1PA7 6471 - 12 334 96354 123 4 0 199 chain 12077 chr3 198022430 + 58814188 58814429 L1PA16 3655 + 3404 3619 151879 134 79 58 7 5 0 16 chain 557356 chr3 198022430 + 58827880 58833905 L1PA2 6032 + 3 6031 574 425 0 1 201 0 1 1508 0 2 3115 1 0 775 chain 336388 chr3 198022430 + 58838003 58841713 L1PA3long 6157 + 2431 6149 11989 269 0 5 478 0 1 2513 0 2 450 chain 30427 chr3 198022430 + 58856332 58856650 AluYb8 318 + 0 318 83592 318 chain 17737 chr3 198022430 + 58871352 58871662 L1MA5A 2387 - 154 460 133603 16 10 7 28 2 1 10 1 3 11 10 8 40 6 8 32 1 0 31 6 5 106 chain 160433 chr3 198022430 + 58875276 58877139 SVA_F 1814 - 2 1814 23283 669 78 0 132 1 0 10 1 0 39 46 33 4 1 0 37 0 1 91 0 42 754 chain 4637 chr3 198022430 + 58875945 58876023 SVA_F 1814 - 720 798 84192 78 chain 2335 chr3 198022430 + 58876227 58876252 SVA_F 1814 - 746 771 150563 25 chain 58822 chr3 198022430 + 58877992 58878768 L1PA10 4194 - 33 808 53508 11 1 0 34 5 2 35 1 0 154 13 14 209 1 2 48 5 7 259 chain 26416 chr3 198022430 + 58879531 58879884 THE1B 368 - 0 368 98353 78 3 0 50 0 2 39 3 5 26 1 0 113 0 15 40 chain 115981 chr3 198022430 + 58879888 58881425 THE1B-int 1605 - 5 1605 32465 4 1 0 97 5 4 102 5 18 228 1 5 172 0 1 411 0 1 6 4 0 96 0 25 116 7 9 199 6 26 6 0 4 49 1 0 21 chain 25785 chr3 198022430 + 58881425 58881771 THE1B 368 - 0 359 100937 77 3 0 97 7 9 17 1 0 109 0 15 35 chain 554894 chr3 198022430 + 58916513 58922659 L1PA3long 6157 + 6 6157 837 298 2 1 857 0 1 1048 0 2 818 0 1 1852 0 1 1124 1 2 146 chain 164706 chr3 198022430 + 58928009 58930053 L1P3 4156 + 7 2054 22699 244 1 0 69 1 0 639 1 5 254 3 4 336 0 1 243 0 1 4 1 0 105 1 0 142 chain 91275 chr3 198022430 + 58934333 58935350 L1PA4 6152 - 2320 3345 39206 573 0 5 89 0 1 319 0 2 36 chain 203088 chr3 198022430 + 58935358 58937642 L1PA4 6152 + 3853 6150 18986 112 3 0 452 0 1 11 0 10 719 0 1 145 0 4 842 chain 30529 chr3 198022430 + 58954399 58954898 L1PA14 3548 - 102 582 83373 32 1 0 21 1 0 15 4 2 35 19 14 106 1 0 84 1 0 6 2 0 17 4 0 71 0 1 31 13 10 35 chain 13127 chr3 198022430 + 58960038 58960221 L1PA16 3655 - 107 284 147735 27 0 1 133 8 1 15 chain 231687 chr3 198022430 + 58965990 58968588 L1PA4 6152 + 3547 6146 17220 2011 4 1 179 0 5 155 2 1 247 chain 11186 chr3 198022430 + 58994196 58994323 L1PA4 6152 + 5752 5879 155484 127 chain 24789 chr3 198022430 + 58994324 58994596 L1PA4 6152 + 5879 6151 105951 272 chain 8008 chr3 198022430 + 59001827 59001962 L1MA5 2750 + 2512 2646 170998 37 0 4 9 5 0 48 6 7 13 3 2 14 chain 529681 chr3 198022430 + 59017625 59024008 L1PA7 6471 + 0 6461 4223 654 0 1 520 3 4 109 0 1 71 0 1 163 1 0 264 0 1 376 1 6 318 1 0 4 0 2 136 0 1 210 0 1 257 0 2 587 6 3 316 1 0 38 0 46 112 9 12 201 0 2 159 1 4 347 0 13 301 0 1 630 17 22 456 5 0 109 chain 3446 chr3 198022430 + 59029279 59029527 Helitron3Na_Mam 445 + 169 417 216277 4 1 0 17 155 160 26 22 18 23 chain 117601 chr3 198022430 + 59036401 59037789 LTR12C 1709 + 0 1709 31925 362 0 1 337 0 320 91 1 0 6 2 0 107 0 4 71 7 6 404 chain 168422 chr3 198022430 + 59044583 59047017 L1PB1 5432 - 10 2408 22234 18 1 0 11 1 0 23 1 0 24 2 0 13 10 7 27 3 0 3 9 0 15 1 0 45 7 6 9 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 8 7 13 45 23 101 6 7 88 9 10 256 0 3 508 0 1 153 0 2 172 19 25 28 0 1 147 0 1 314 14 15 197 1 0 4 0 1 33 chain 29026 chr3 198022430 + 59051452 59051766 AluYb8 318 - 8 318 88877 178 4 0 132 chain 3582 chr3 198022430 + 59054853 59054895 Tigger3b 1229 + 47 89 213956 42 chain 8565 chr3 198022430 + 59057377 59057478 THE1A 353 + 222 323 167934 101 chain 20487 chr3 198022430 + 59082239 59082548 L1PA8 5853 - 0 307 125661 52 1 6 34 3 2 18 2 1 45 9 8 8 1 0 69 2 0 45 2 1 18 chain 218609 chr3 198022430 + 59082555 59085609 L1PA10 4194 - 913 3942 17966 318 0 1 248 0 2 81 0 2 58 0 5 75 14 15 480 0 1 174 1 0 62 2 1 411 5 6 598 16 12 31 13 12 204 10 9 4 1 0 65 148 121 13 3 1 19 chain 38354 chr3 198022430 + 59091344 59091806 MER41A 554 + 0 467 71639 408 0 4 18 0 1 36 chain 29074 chr3 198022430 + 59113759 59114069 AluYa5 310 - 0 310 88665 310 chain 29213 chr3 198022430 + 59125232 59125545 AluYa5 310 + 0 310 87990 132 3 0 178 chain 11544 chr3 198022430 + 59156110 59156258 THE1D 372 + 221 372 154124 70 0 2 22 1 2 55 chain 8148 chr3 198022430 + 59158698 59158831 MER11A 1151 + 0 1151 170242 77 8 17 13 1 1010 34 chain 29113 chr3 198022430 + 59159712 59160019 AluYb8 318 - 0 307 88494 307 chain 21260 chr3 198022430 + 59163358 59163995 L1MA4 2864 - 686 990 122993 60 1 0 23 0 1 85 3 0 46 342 12 77 chain 3206 chr3 198022430 + 59195203 59195239 MIRb 242 + 79 115 220832 36 chain 64676 chr3 198022430 + 59204271 59204980 L1PA4 6152 - 9 719 50706 608 0 1 101 chain 503448 chr3 198022430 + 59206569 59212504 L1PA6 6164 - 7 5958 6644 154 4 1 765 1 0 594 1 0 395 0 1 196 6 14 93 1 0 4 0 2 621 0 1 49 0 3 939 3 0 466 0 3 408 19 21 188 0 1 671 1 0 48 6 5 5 0 3 239 0 1 28 0 2 30 chain 114193 chr3 198022430 + 59215396 59216943 THE1B-int 1605 - 0 1605 33030 9 1 2 60 24 15 25 1 2 56 3 1 247 0 1 125 16 19 326 3 0 9 2 3 246 1 65 376 5 6 12 chain 46408 chr3 198022430 + 59278964 59279550 L1PA15 4387 - 586 1172 61679 92 1 0 472 0 1 21 chain 109690 chr3 198022430 + 59279963 59281362 THE1B-int 1605 - 33 1461 34282 99 5 6 441 1 3 8 2 0 88 0 1 453 0 1 6 0 1 5 5 30 286 chain 11854 chr3 198022430 + 59283549 59283713 THE1A-int 1579 + 17 184 152818 15 1 0 5 0 1 69 0 3 59 2 1 5 0 1 8 chain 21051 chr3 198022430 + 59298076 59298336 AluY 311 + 48 304 123721 84 0 1 161 5 0 10 chain 17092 chr3 198022430 + 59326592 59326862 MER2 342 + 71 332 135339 8 3 0 35 10 9 12 0 1 156 12 7 16 1 0 17 chain 403234 chr3 198022430 + 59333253 59338923 L1PB1 5432 - 12 5355 9993 16 1 0 11 11 10 13 1 0 17 3 0 7 2 0 14 1 0 4 3 1 14 9 0 17 2 0 16 1 0 43 2 1 15 2 1 53 15 9 11 1 0 11 1 0 15 7 5 9 1 4 17 0 1 264 332 0 85 0 10 18 1 0 35 0 7 33 5 1 75 0 6 40 0 1 163 0 1 63 1 3 278 0 9 261 5 6 90 7 6 46 0 1 4 1 0 441 0 1 246 0 1 118 0 2 90 10 20 17 6 8 141 6 0 172 7 11 826 0 1 87 22 7 145 0 1 13 0 2 367 8 9 245 1 2 59 1 2 132 1 0 143 0 1 15 5 4 173 chain 492144 chr3 198022430 + 59340931 59346672 L1PA4 6152 - 422 6150 7262 694 5 0 1030 1 0 829 1 0 856 0 1 168 10 1 779 0 1 51 3 1 69 7 6 119 0 1 333 1 2 59 1 0 82 0 2 57 3 0 5 0 3 137 4 6 53 1 0 383 chain 9749 chr3 198022430 + 59359800 59359921 MER85 139 + 9 139 161851 11 1 0 70 0 10 39 chain 53505 chr3 198022430 + 59361208 59361790 L1PA3long 6157 - 0 582 56677 582 chain 543506 chr3 198022430 + 59380882 59387339 L1PA4 6152 + 1 6152 2267 475 0 2 16 4 7 1445 1 0 748 0 5 510 1 0 1246 0 1 264 10 8 395 318 0 181 0 5 843 chain 52386 chr3 198022430 + 59401294 59401914 L1PA6 6164 + 5538 6162 57366 476 1 5 143 chain 95011 chr3 198022430 + 59446375 59447463 L1PA5 6144 + 5043 6134 38093 251 1 4 836 chain 29934 chr3 198022430 + 59450802 59451344 MER51C 639 + 2 611 85009 8 21 0 35 1 0 4 6 79 78 10 11 19 22 23 34 7 9 84 35 46 120 3 4 55 chain 8224 chr3 198022430 + 59451387 59451495 MER30B 195 + 83 195 169820 11 0 1 51 1 4 45 chain 43627 chr3 198022430 + 59455217 59455756 LTR14C 587 - 0 555 64655 66 1 17 194 1 0 5 0 1 272 chain 35670 chr3 198022430 + 59457331 59457846 MLT2A2 560 - 13 560 75303 57 29 30 45 5 16 45 0 1 135 0 3 17 0 8 10 3 11 169 chain 146350 chr3 198022430 + 59477178 59478789 L1PA4 6152 - 0 1616 25110 6 0 5 1605 chain 84574 chr3 198022430 + 59478789 59479729 L1PA4 6152 + 3409 4351 41540 43 0 2 897 chain 16848 chr3 198022430 + 59479729 59479921 L1PA4 6152 + 4355 4547 135986 192 chain 86439 chr3 198022430 + 59480354 59481565 L1PA13 3608 - 140 1345 40994 20 2 0 5 2 0 47 2 0 5 1 0 55 1 0 63 20 18 95 1 0 32 9 8 115 6 5 274 0 3 98 0 3 72 5 7 128 3 1 130 0 1 20 chain 60784 chr3 198022430 + 59497101 59497882 LTR12 884 + 0 869 52431 25 9 8 54 0 66 93 1 26 106 2 0 491 chain 41558 chr3 198022430 + 59504743 59505327 MER51C 639 - 31 629 67209 157 0 6 143 1 3 29 33 34 28 0 1 36 4 8 153 chain 10406 chr3 198022430 + 59511625 59511797 Tigger4a 237 + 37 224 158661 29 25 26 11 0 7 65 0 7 42 chain 59747 chr3 198022430 + 59552590 59553348 L1PA8 5853 - 0 752 52964 93 1 0 19 2 1 41 1 0 11 1 0 9 2 1 70 2 0 44 1 0 168 0 2 293 chain 528960 chr3 198022430 + 59599581 59605678 L1PA5 6144 + 3 6132 4305 121 14 0 11 6 20 394 0 4 414 0 1 1149 2 0 94 0 26 283 3 0 696 1 2 1453 0 6 620 0 4 680 15 9 6 0 1 135 chain 227172 chr3 198022430 + 59613008 59615569 L1PA5 6144 + 3570 6138 17478 1720 0 5 574 0 1 131 0 1 136 chain 14540 chr3 198022430 + 59662203 59662423 MER30 238 - 0 238 142760 45 9 12 53 10 26 64 1 0 38 chain 68213 chr3 198022430 + 59701688 59702742 MER11B 1079 - 2 1063 49155 26 1 0 171 0 1 53 8 9 21 0 2 7 56 49 20 2 6 82 0 25 10 19 20 28 21 11 12 0 1 13 26 14 22 18 17 403 0 3 35 chain 42675 chr3 198022430 + 59711367 59711921 MER41A 554 - 0 552 65806 81 0 5 40 0 1 13 0 4 163 0 1 82 1 0 118 12 0 44 chain 57120 chr3 198022430 + 59714954 59715713 MER4E1 777 + 0 769 54453 38 3 0 326 0 1 14 0 4 24 2 14 117 24 20 44 1 0 162 0 1 4 chain 6097 chr3 198022430 + 59742595 59742714 MER104 178 + 14 135 184445 42 26 27 21 1 2 29 chain 25161 chr3 198022430 + 59790127 59790483 MER51B 395 - 11 395 103953 29 0 4 106 1 0 129 10 16 34 7 26 40 chain 34161 chr3 198022430 + 59801000 59801601 L1PB1 5432 + 4860 5420 77398 142 2 1 100 1 2 9 5 0 24 1 0 8 5 0 11 6 2 8 2 0 52 1 0 17 1 0 45 1 0 15 25 12 18 4 2 4 1 0 11 13 11 16 1 0 22 1 0 12 5 4 12 chain 109282 chr3 198022430 + 59807541 59809141 L1PB1 5432 - 5 1578 34376 5 2 0 4 1 0 17 1 0 10 2 1 20 1 0 26 2 0 13 1 0 4 5 4 15 18 8 4 1 0 16 1 0 43 7 6 10 2 1 46 8 6 9 5 1 12 24 22 10 3 0 9 1 2 44 0 2 259 6 4 168 3 0 209 6 8 29 7 6 164 0 1 102 0 7 108 0 1 137 chain 58969 chr3 198022430 + 59809141 59809910 L1PB1 5432 + 3029 3808 53314 27 0 1 148 0 1 382 0 1 36 1 2 88 6 10 35 0 1 10 3 4 33 chain 27551 chr3 198022430 + 59849885 59850239 THE1A 353 + 0 353 94502 109 8 7 237 chain 4394 chr3 198022430 + 59860210 59860262 MER5A 189 - 116 171 202010 12 0 3 40 chain 35635 chr3 198022430 + 59895753 59896194 MER4A1 472 - 26 472 75362 432 0 5 9 chain 46331 chr3 198022430 + 59896214 59896843 MER4-int 2692 - 11 650 61741 139 0 1 40 7 6 208 0 2 9 8 5 81 1 12 136 chain 21964 chr3 198022430 + 59901717 59902196 MLT2A1 477 + 7 383 120380 155 11 8 5 0 2 16 30 33 58 55 0 6 43 0 20 0 1 36 5 0 15 12 9 12 chain 5108 chr3 198022430 + 59912442 59912502 L1MB7 1623 + 1116 1176 193991 60 chain 26214 chr3 198022430 + 59920288 59920665 THE1C 375 - 0 375 99148 25 1 0 152 24 22 84 4 5 87 chain 28631 chr3 198022430 + 59947188 59947598 L1P3 4156 - 3749 4156 90600 85 6 4 56 35 34 228 chain 22668 chr3 198022430 + 60018952 60019230 AluSp 311 + 11 292 117227 18 1 3 99 0 1 160 chain 25438 chr3 198022430 + 60030975 60031292 THE1B 368 - 24 368 102507 172 5 4 107 0 28 33 chain 2888 chr3 198022430 + 60063102 60063173 L1MC4 1079 + 27 85 227228 31 28 15 12 chain 91148 chr3 198022430 + 60083442 60084441 L1PA4 6152 - 1 999 39250 259 1 0 739 chain 18215 chr3 198022430 + 60113899 60114268 THE1C 375 + 0 375 132298 64 129 134 150 0 1 26 chain 11503 chr3 198022430 + 60139846 60139979 MER85 139 + 0 133 154287 133 chain 15243 chr3 198022430 + 60176322 60176502 L1PA3long 6157 + 5972 6157 140659 7 0 4 24 4 5 145 chain 63233 chr3 198022430 + 60179700 60180611 L1PB3 3668 + 2227 3141 51348 17 4 8 14 10 4 44 2 6 35 2 0 16 0 1 27 3 7 262 1 0 145 0 1 92 0 4 78 2 0 10 5 0 84 3 4 55 chain 31073 chr3 198022430 + 60195393 60195774 L1PA8A 6298 + 5911 6291 82390 272 12 11 97 chain 3348 chr3 198022430 + 60208639 60208678 MADE1 96 - 57 96 218081 39 chain 19256 chr3 198022430 + 60219373 60219681 THE1B 368 + 0 303 129361 169 2 1 9 30 21 14 0 4 12 1 0 8 4 6 59 chain 31328 chr3 198022430 + 60246346 60246857 MER41B 635 + 0 551 81940 110 0 1 14 20 31 19 5 0 192 5 0 31 8 8 44 40 78 23 chain 23917 chr3 198022430 + 60317304 60317591 AluSp 311 + 10 295 110827 272 2 0 13 chain 3124 chr3 198022430 + 60343684 60343719 MER5A 189 + 29 64 222465 35 chain 30254 chr3 198022430 + 60363197 60363513 AluYb8 318 - 2 318 84050 316 chain 3224 chr3 198022430 + 60382252 60382315 L1MB5 1630 + 1354 1415 220519 27 16 14 20 chain 7579 chr3 198022430 + 60389703 60389876 MER51A 677 + 127 253 173675 49 67 20 57 chain 128965 chr3 198022430 + 60428077 60429521 L1PA4 6152 - 1072 2517 28317 932 0 1 512 chain 92811 chr3 198022430 + 60429521 60430579 L1PA4 6152 + 5086 6143 38687 298 1 0 434 1 0 186 1 2 137 chain 23261 chr3 198022430 + 60435245 60436062 Tigger3c 601 - 63 562 114382 90 6 4 82 412 105 75 1 0 17 1 0 23 1 0 7 47 41 55 chain 154403 chr3 198022430 + 60442567 60444316 L1PA4 6152 + 4393 6136 24058 908 1 0 516 0 1 44 0 1 116 13 6 151 chain 367517 chr3 198022430 + 60466844 60471494 L1PA8A 6298 + 1610 6290 11168 895 1 2 251 6 10 39 10 0 88 0 1 73 0 4 195 7 6 107 5 6 84 18 14 11 1 0 3 1 0 9 0 2 8 5 9 48 1 0 394 17 19 382 0 1 327 0 1 80 0 6 98 0 3 73 4 3 390 0 14 223 0 3 260 6 5 36 0 1 282 0 1 106 0 1 106 chain 3710 chr3 198022430 + 60485876 60486035 MER58A 224 + 42 217 211802 7 7 0 33 92 115 20 chain 29506 chr3 198022430 + 60519878 60520196 AluYb8 318 + 0 312 86614 126 6 0 186 chain 159487 chr3 198022430 + 60523864 60525678 L1PA5 6144 + 4323 6138 23405 22 0 1 282 1 0 783 1 0 353 1 0 18 1 4 352 chain 49920 chr3 198022430 + 60551428 60551992 L1P1 4361 - 1152 1720 58877 429 0 4 135 chain 207593 chr3 198022430 + 60551992 60554352 L1PA4 6152 + 3789 6152 18672 1086 5 9 506 2 1 138 0 1 616 1 0 6 chain 24786 chr3 198022430 + 60572823 60573215 L1PA8 5853 + 5432 5817 105964 87 1 2 43 1 0 44 2 0 70 14 12 45 7 6 19 1 0 33 10 9 15 chain 11227 chr3 198022430 + 60597103 60597236 MER85 139 + 6 139 155321 133 chain 7038 chr3 198022430 + 60610454 60610549 L1MB8 1703 - 181 274 177189 87 2 0 6 chain 114416 chr3 198022430 + 60646821 60648529 L1PB1 5432 - 21 1702 32966 7 1 0 13 1 0 12 10 9 19 74 60 10 1 0 45 1 0 17 1 0 51 23 17 5 1 0 8 2 0 24 13 11 258 0 1 214 4 0 112 0 5 67 15 24 37 0 1 422 1 0 59 30 23 150 chain 40346 chr3 198022430 + 60657935 60658386 LTR7 482 - 0 482 68815 187 1 32 263 chain 65054 chr3 198022430 + 60680064 60680807 L1PA5 6144 + 5401 6142 50549 594 0 2 138 4 0 7 chain 9511 chr3 198022430 + 60685329 60685431 L1HS 6032 + 5926 6028 163013 102 chain 21882 chr3 198022430 + 60691828 60692136 L1PA8 5853 + 5546 5853 120703 18 1 0 39 8 6 73 1 0 11 2 0 31 0 7 9 2 1 19 2 1 92 chain 486163 chr3 198022430 + 60696018 60701514 L1PA3long 6157 + 2 6157 7516 902 0 1 143 1 0 459 6 8 370 4 0 80 0 1 1474 6 1 1595 5 671 111 1 0 339 chain 31179 chr3 198022430 + 60755205 60755628 MER57A1 433 - 0 433 82202 99 1 3 47 3 4 191 1 5 49 0 3 32 chain 274523 chr3 198022430 + 60762002 60766484 MER61-int 3695 + 1 3695 14950 27 23 20 5 2 0 66 3 5 74 39 0 64 1 0 10 1 0 138 1 2 112 0 1 12 7 6 96 2 0 67 9 3 96 756 0 146 2 0 277 1 6 8 1 0 115 0 3 259 1 6 30 1 0 467 7 10 254 0 1 222 2 0 4 2 0 155 1 0 99 28 25 144 0 1 108 0 1 4 3 1 203 2 1 75 8 9 134 0 15 55 0 6 8 21 14 24 chain 56834 chr3 198022430 + 60762861 60763613 MER4E 760 - 0 760 54638 7 0 1 4 1 0 153 1 5 93 1 0 9 0 4 38 1 0 74 1 3 189 17 10 9 0 10 127 3 0 24 chain 28335 chr3 198022430 + 60781622 60781976 THE1A 353 - 0 353 91816 243 2 1 109 chain 66849 chr3 198022430 + 60864169 60864924 L1PA4 6152 - 0 762 49707 6 0 5 102 0 1 34 0 1 613 chain 37017 chr3 198022430 + 60874594 60875125 LTR10F 562 + 0 562 73496 135 8 9 28 0 28 29 0 24 13 21 0 12 3 0 226 0 1 17 5 6 34 chain 18569 chr3 198022430 + 60890330 60890586 AluSg7 307 + 0 256 131307 27 6 5 99 22 23 102 chain 534411 chr3 198022430 + 60909245 60917036 L1PA4 6152 + 1 6141 3665 848 15 15 372 1 0 532 1 0 466 0 3 84 0 1 29 0 1 746 0 2 276 1661 0 140 0 1 364 0 1 50 0 3 811 2 0 178 1 0 352 0 1 23 0 1 353 0 1 486 chain 110257 chr3 198022430 + 60912630 60913998 SVA_B 1603 + 6 1603 34139 14 17 0 11 6 0 7 14 6 22 0 5 285 0 15 300 0 3 62 0 117 35 3 5 12 0 1 2 0 119 570 2 0 6 chain 4933 chr3 198022430 + 60935751 60935817 Tigger3c 601 + 343 419 195900 23 0 10 43 chain 520915 chr3 198022430 + 60946112 60952238 L1PA5 6144 - 16 6144 5067 157 13 0 109 0 3 583 1 5 248 0 1 715 1 0 269 0 1 212 0 1 144 7 9 5 2 0 831 1 0 523 1 0 491 0 2 649 8 0 1021 0 14 135 chain 44107 chr3 198022430 + 60972881 60973378 MER9a1 513 + 0 513 64076 127 0 1 153 0 15 217 chain 49495 chr3 198022430 + 61005540 61006182 L1PA7 6471 - 2 978 59392 170 14 342 323 0 1 12 1 0 115 0 6 7 chain 252111 chr3 198022430 + 61006183 61009687 L1P2 5180 + 1985 5160 16123 26 9 7 216 13 0 85 0 1 255 0 4 193 316 0 563 5 6 15 0 1 208 0 1 42 4 0 74 0 3 418 0 2 519 0 2 81 0 10 8 17 0 364 1 0 47 1 0 24 chain 10308 chr3 198022430 + 61012258 61012426 MER30 238 + 40 231 159098 60 2 0 8 4 0 9 1 21 10 5 11 37 0 3 32 chain 30395 chr3 198022430 + 61025131 61025526 L1PA7 6471 + 6066 6463 83690 239 27 28 50 1 2 78 chain 514859 chr3 198022430 + 61028660 61034802 L1PA5 6144 + 0 6138 5686 120 0 14 42 0 1 167 21 0 177 4 0 628 0 3 17 9 0 458 0 1 679 7 0 64 0 1 1147 1 0 157 1 0 424 0 12 634 0 6 111 0 1 394 7 6 30 1 0 452 0 3 202 1 0 8 0 1 71 1 0 107 chain 19681 chr3 198022430 + 61048706 61048939 AluY 311 + 57 294 128157 75 0 1 17 0 3 141 chain 4406 chr3 198022430 + 61067428 61067493 MLT1C 463 - 339 405 201863 17 1 2 47 chain 16988 chr3 198022430 + 61082785 61082986 L1P1 4361 + 4 205 135622 201 chain 390592 chr3 198022430 + 61085738 61090878 L1PA6 6164 - 2 5151 10432 660 0 1 186 2 3 211 5 4 262 0 1 125 0 1 53 0 5 828 0 1 291 0 1 339 0 1 863 11 0 863 0 1 4 5 4 13 115 118 95 139 145 70 chain 29220 chr3 198022430 + 61093330 61093723 MER57B1 401 - 5 401 87956 287 22 24 64 0 1 20 chain 233557 chr3 198022430 + 61106326 61109182 L1PA7 6471 + 1362 6468 17114 307 0 1 178 1 2 179 0 1 130 0 5 172 3 0 181 24 35 87 0 1 119 8 2237 619 1 4 90 2 1 306 2 1 8 0 2 15 0 1 424 chain 39332 chr3 198022430 + 61150562 61151168 L1PA16 3655 - 153 757 70279 92 12 11 99 0 1 9 4 2 65 20 19 81 0 2 6 22 21 37 1 2 134 1 0 23 chain 332715 chr3 198022430 + 61172999 61176757 L1PA4 6152 + 2381 6143 12097 2923 0 4 835 chain 534595 chr3 198022430 + 61190500 61196629 L1PA4 6152 - 1 6152 3642 141 5 8 700 0 4 368 0 1 1642 0 1 178 9 13 526 0 1 248 2 0 918 1 6 600 0 6 785 1 0 5 chain 546687 chr3 198022430 + 61196695 61202828 L1PA3long 6157 + 6 6157 1865 976 0 4 53 0 1 786 4 1 2371 3 0 202 0 17 567 0 2 1171 chain 44297 chr3 198022430 + 61231500 61232046 MER41A 554 + 0 546 63827 546 chain 20189 chr3 198022430 + 61232241 61232535 L1PA8 5853 + 5565 5853 126563 45 3 1 71 1 0 5 11 9 44 2 1 19 4 3 41 0 1 48 chain 474317 chr3 198022430 + 61244011 61249934 L1PA7 6471 - 1 6461 7901 9 2 0 137 3 5 104 0 2 36 7 6 141 4 4 14 0 2 11 9 9 35 2 551 70 0 34 23 0 1 29 17 4 163 1 0 75 49 0 731 5 0 62 0 2 213 3 0 75 4 0 980 0 1 308 7 0 109 6 8 288 2 1 60 0 4 74 0 11 594 15 0 130 5 6 5 1 0 606 30 59 272 6 0 303 0 5 88 chain 68392 chr3 198022430 + 61259371 61260439 L1MA1 4479 - 293 1322 49093 14 7 0 13 4 1 7 1 0 9 1 0 37 2 0 27 1 0 28 3 4 94 9 5 88 1 0 19 10 8 6 1 0 71 1 0 16 1 0 4 1 0 15 2 0 4 0 1 140 0 6 35 0 1 10 6 4 131 3 0 77 11 6 32 20 15 7 1 0 74 4 0 20 chain 3672 chr3 198022430 + 61305576 61305620 MADE1 96 + 50 94 212342 44 chain 248967 chr3 198022430 + 61349709 61352850 L1P2 5180 + 2 5178 16314 110 0 3 5 3 0 18 51 63 46 1 0 261 1 0 7 1 0 272 1 0 5 1 0 141 1 26 46 9 1719 451 1 2 131 0 1 206 4 0 193 20 25 321 0 1 270 1 0 30 9 302 433 2 1 44 1 0 39 1 0 4 chain 2325 chr3 198022430 + 61353265 61353291 L1PA5 6144 + 5583 5609 235025 26 chain 18613 chr3 198022430 + 61353291 61353522 L1PA5 6144 + 5904 6134 131178 91 1 0 139 chain 75076 chr3 198022430 + 61369223 61370101 L1PA6 6164 + 5244 6155 45983 69 1 5 227 0 29 581 chain 26026 chr3 198022430 + 61370196 61370496 AluSp 311 + 11 311 99912 300 chain 158798 chr3 198022430 + 61376783 61378616 L1P1 4361 + 1 1835 23487 1236 0 1 597 chain 124120 chr3 198022430 + 61378616 61380110 SVA_B 1603 - 0 1603 29657 6 2 0 578 0 40 64 0 82 276 11 12 498 37 25 22 chain 387370 chr3 198022430 + 61380773 61385089 L1PA4 6152 + 1832 6151 10539 484 1 0 727 0 1 4 1 0 161 1 0 731 0 1 1093 1 0 266 0 5 846 chain 12660 chr3 198022430 + 61395988 61396126 L1PA4 6152 + 6008 6146 149603 138 chain 151940 chr3 198022430 + 61419454 61421381 SVA_F 1814 - 2 1804 24344 15 3 0 135 8 0 575 126 0 107 18 33 35 0 1 22 1 2 21 37 31 22 0 1 802 chain 5948 chr3 198022430 + 61420190 61420302 SVA_F 1814 - 918 1150 147773 7 1 2 32 13 12 16 2 122 41 chain 3820 chr3 198022430 + 61455092 61455226 L1MC1 2226 - 42 157 210084 19 18 17 12 1 0 8 19 9 13 7 5 18 5 0 14 chain 13236 chr3 198022430 + 61471497 61471703 Tigger1 2417 - 1662 1896 147336 42 8 9 21 0 4 19 1 31 37 7 0 71 chain 29307 chr3 198022430 + 61475061 61475371 AluYa5 310 - 0 310 87534 310 chain 146694 chr3 198022430 + 61486531 61488707 L1PA13 3608 - 86 2676 25053 4 1 0 18 23 15 20 1 0 17 2 0 6 6 4 42 2 0 5 1 0 32 1 0 24 2 1 11 0 1 4 16 11 34 2 0 114 13 12 14 2 1 159 0 1 37 0 4 20 0 1 114 1 0 254 9 20 105 35 10 159 0 1 94 1 0 4 0 1 11 1 2 14 1 2 65 23 27 62 0 4 64 5 1 362 13 456 146 chain 24806 chr3 198022430 + 61534364 61534666 AluSg7 307 - 6 307 105857 147 1 2 20 2 0 132 chain 182561 chr3 198022430 + 61535060 61538996 L1PB2 3958 - 184 2840 20730 20 2 0 75 348 9 53 1 0 54 356 23 49 0 10 14 0 5 11 4 0 12 2 0 14 0 3 48 5 0 13 1 0 54 2 0 70 4 0 32 325 17 34 21 0 7 0 21 202 1 0 206 0 2 233 5 0 104 24 41 227 7 10 107 7 6 68 2 0 5 0 2 53 0 1 4 6 5 67 0 7 10 14 6 32 1 0 357 307 0 102 0 1 17 6 0 49 0 3 31 1 0 50 chain 20950 chr3 198022430 + 61538450 61538717 AluSq2 311 - 28 301 124108 149 0 1 47 1 6 70 chain 3870 chr3 198022430 + 61652326 61652456 MER20 218 - 14 128 209309 40 73 57 17 chain 146245 chr3 198022430 + 61656812 61658447 SVA_D 2077 - 0 2077 25123 18 2 0 517 0 225 208 6 189 12 2 0 143 0 40 544 0 1 173 3 0 7 chain 22302 chr3 198022430 + 61659530 61659864 L1PA7 6471 + 6127 6466 118906 73 0 4 21 9 13 59 12 13 7 2 0 4 0 1 125 10 7 12 chain 24736 chr3 198022430 + 61661860 61662153 AluY 311 + 11 305 106239 119 1 2 173 chain 30062 chr3 198022430 + 61678146 61678548 LTR7 482 - 0 482 84625 158 0 10 19 1 32 38 0 1 109 8 46 69 chain 33384 chr3 198022430 + 61684476 61684854 L1PA4 6152 + 5774 6151 78597 158 1 0 219 chain 12337 chr3 198022430 + 61696180 61696398 MER30 238 + 0 230 150869 16 0 18 12 17 0 53 9 0 12 2 27 51 6 1 40 chain 69129 chr3 198022430 + 61696456 61697280 L1PA7 6471 - 10 837 48749 615 3 4 142 0 2 64 chain 11356 chr3 198022430 + 61697280 61697416 L1PA7 6471 + 5475 5614 154536 32 0 3 104 chain 21084 chr3 198022430 + 61698077 61698439 THE1D 372 + 0 372 123605 45 19 20 95 25 34 4 1 0 82 9 11 46 4 3 32 chain 10335 chr3 198022430 + 61711096 61711237 L1MD1 2063 - 779 921 158960 93 6 7 42 chain 5785 chr3 198022430 + 61724802 61724871 HY3 101 - 1 70 187323 69 chain 37387 chr3 198022430 + 61761345 61761761 L1PA4 6152 + 5735 6151 72975 416 chain 3138 chr3 198022430 + 61764021 61764078 MER51A 677 - 447 494 222222 29 11 1 17 chain 19954 chr3 198022430 + 61909082 61909323 L1PA4 6152 - 0 242 127288 136 8 9 97 chain 15779 chr3 198022430 + 61945005 61945251 MER1B 344 - 0 297 139021 58 1 18 48 0 18 67 3 0 5 8 11 26 3 19 27 chain 2984 chr3 198022430 + 61964637 61964672 MIRb 242 + 100 135 225352 35 chain 22419 chr3 198022430 + 61978901 61979169 AluSp 311 - 22 288 118380 161 3 1 104 chain 5308 chr3 198022430 + 61985040 61985168 MLT1A0 366 - 228 357 191937 58 53 54 17 chain 24083 chr3 198022430 + 62045340 62045700 THE1C 375 + 0 360 109854 77 46 43 83 0 3 123 0 1 20 1 0 10 chain 5165 chr3 198022430 + 62056561 62056621 L1PA2 6032 + 5971 6031 193396 60 chain 24416 chr3 198022430 + 62062257 62062543 AluSp 311 - 14 300 107993 286 chain 3439 chr3 198022430 + 62068896 62068936 MADE1 96 + 3 43 216395 40 chain 123027 chr3 198022430 + 62093723 62095241 L1PA7 6471 - 1 1522 30037 9 4 0 6 0 6 161 9 10 600 0 3 51 0 3 74 11 5 593 chain 2916 chr3 198022430 + 62104148 62104180 U2 167 - 135 167 226747 32 chain 4653 chr3 198022430 + 62122158 62122208 HSMAR1 1287 + 671 721 199038 50 chain 23904 chr3 198022430 + 62122235 62122578 THE1B 368 + 0 368 110890 22 0 1 17 0 15 113 1 0 26 4 1 6 0 1 12 17 29 125 chain 12072 chr3 198022430 + 62244978 62245161 MER30 238 - 0 204 151892 78 4 10 18 8 0 10 5 28 60 chain 5194 chr3 198022430 + 62251013 62251081 L1MB7 1623 - 1446 1514 193097 68 chain 3919 chr3 198022430 + 62271705 62271793 Charlie1b 519 + 378 475 208565 45 26 35 17 chain 25946 chr3 198022430 + 62288838 62289119 AluYb8 318 - 0 281 100227 281 chain 151203 chr3 198022430 + 62290862 62292711 L1PA8 5853 + 3976 5853 24448 24 0 11 204 8 6 407 0 1 83 0 6 266 1 0 25 0 3 70 0 13 108 0 2 177 1 3 177 1 0 46 2 0 71 1 0 10 1 0 51 2 1 21 1 0 91 chain 24400 chr3 198022430 + 62296339 62296641 AluY 311 + 0 304 108072 32 2 1 99 0 1 142 0 2 27 chain 21851 chr3 198022430 + 62324972 62325335 THE1C 375 + 7 375 120814 131 11 15 26 0 2 5 31 29 31 7 8 22 1 2 71 1 0 26 chain 22910 chr3 198022430 + 62329191 62329565 MSTA 426 + 0 416 116060 97 27 51 58 4 0 6 26 28 56 1 21 99 chain 4023 chr3 198022430 + 62330365 62330414 U3 216 + 14 63 207034 49 chain 3803 chr3 198022430 + 62428451 62428498 MIR 256 + 78 125 210336 47 chain 25407 chr3 198022430 + 62429137 62429507 THE1C 375 + 2 375 102650 167 2 3 9 34 36 158 chain 3320 chr3 198022430 + 62441064 62441099 MIRb 242 - 115 150 218569 35 chain 34919 chr3 198022430 + 62443348 62443766 L1PA7 6471 + 6048 6468 76313 180 5 9 222 2 0 9 chain 21822 chr3 198022430 + 62537819 62538052 L1PA4 6152 + 5907 6140 120936 233 chain 15683 chr3 198022430 + 62549237 62549589 L1PB1 5432 - 10 329 139321 16 7 6 9 1 0 21 1 0 21 20 17 5 2 0 19 16 6 6 3 0 16 1 0 44 6 5 10 2 1 53 2 0 5 8 4 11 1 0 13 1 0 20 1 0 11 chain 4324 chr3 198022430 + 62561100 62561193 MIR 256 + 113 212 202903 35 3 0 12 3 7 15 9 14 16 chain 44083 chr3 198022430 + 62565768 62566262 L1PA3long 6157 + 5654 6149 64121 409 0 1 85 chain 27336 chr3 198022430 + 62579827 62580135 AluYa5 310 - 15 310 95158 8 13 0 287 chain 29140 chr3 198022430 + 62581362 62581763 MLT2A1 477 + 0 397 88365 142 26 31 55 3 0 157 6 0 12 chain 3959 chr3 198022430 + 62651437 62651485 MIRb 242 + 58 104 207993 9 2 0 37 chain 4389 chr3 198022430 + 62671243 62671295 L1MA5A 2387 + 2243 2295 202094 52 chain 9166 chr3 198022430 + 62684660 62684865 L1PB1 5432 - 10 193 164729 18 1 0 13 5 1 9 16 15 20 2 0 14 9 6 15 9 0 10 1 0 21 1 0 41 chain 92944 chr3 198022430 + 62726861 62728329 L1PREC2 3366 + 1632 3070 38672 176 1 2 504 35 34 39 1 0 25 27 28 43 1 0 33 0 1 235 3 1 18 4 3 32 1 0 43 1 0 5 3 0 13 76 61 18 8 6 11 22 8 35 6 4 39 0 11 10 chain 21993 chr3 198022430 + 62743368 62743736 THE1B 368 - 0 368 120261 130 1 0 8 49 50 11 1 0 82 18 19 68 chain 5871 chr3 198022430 + 62748359 62748431 MER2 342 + 217 289 186462 72 chain 5523 chr3 198022430 + 62800071 62800154 U6 107 + 11 95 189808 28 1 0 39 1 3 14 chain 475057 chr3 198022430 + 62832956 62838102 L1PA2 6032 - 4 6032 7880 1792 0 4 1100 0 4 2155 0 874 99 chain 48099 chr3 198022430 + 62894035 62894620 L1PA6 6164 + 5582 6162 60402 422 1 0 12 3 1 137 2 0 8 chain 163034 chr3 198022430 + 62900635 62902545 L1PA6 6164 - 5 1904 22935 1022 0 1 288 14 1 323 0 1 263 chain 118372 chr3 198022430 + 62936270 62937840 THE1B-int 1605 + 1 1605 31656 24 9 11 122 0 3 117 0 5 149 11 38 49 1 0 128 1 0 32 21 22 325 0 1 45 4 0 444 16 17 72 chain 3236 chr3 198022430 + 62950529 62950633 LTR16E1 515 - 19 138 220316 37 35 48 12 7 9 13 chain 324014 chr3 198022430 + 62995779 62999994 L1PA8A 6298 - 8 4238 12436 136 5 7 198 7 4 111 9 4 188 1 2 67 1 0 36 0 1 46 2 1 288 1 3 271 0 5 29 20 4 70 1 0 156 3 0 5 0 3 11 2 7 57 0 1 66 0 1 350 1 0 290 0 1 149 0 4 32 0 4 24 5 6 171 1 0 82 1 0 40 1 0 4 1 2 152 7 8 4 1 0 220 0 4 130 0 11 42 0 4 197 0 4 75 0 1 111 10 1 18 0 3 13 5 4 291 chain 8828 chr3 198022430 + 63001778 63001899 L1P3b 214 - 39 155 166500 13 4 0 20 1 0 83 chain 196838 chr3 198022430 + 63002235 63004477 L1PA4 6152 - 18 2219 19437 830 40 0 255 0 1 646 3 0 434 0 1 34 chain 15754 chr3 198022430 + 63004996 63005218 MER30 238 - 0 238 139098 39 3 0 75 12 31 93 chain 102779 chr3 198022430 + 63068251 63069700 L1MA2 4263 - 159 1590 36057 28 33 29 72 29 27 85 1 0 36 1 0 18 18 15 127 21 20 54 13 9 17 3 0 204 0 1 11 1 0 513 0 1 164 chain 57364 chr3 198022430 + 63083682 63084529 L1PB2 3958 - 120 951 54307 18 5 8 37 2 1 88 6 5 64 1 0 72 1 0 94 5 0 11 7 5 30 0 1 30 15 10 58 2 0 16 28 26 257 chain 2617 chr3 198022430 + 63103204 63103313 MER5A1 166 - 58 165 231480 15 23 24 18 33 30 20 chain 559638 chr3 198022430 + 63121944 63127977 L1PA2 6032 + 0 6032 378 2191 1 0 3841 chain 255903 chr3 198022430 + 63138754 63141518 L1PA2 6032 + 3268 6032 15941 2764 chain 32251 chr3 198022430 + 63142389 63142867 L1PA8 5853 + 5381 5853 80438 183 1 0 44 2 0 8 1 3 59 30 27 35 2 1 21 1 0 91 chain 67205 chr3 198022430 + 63147864 63148669 L1PA8 5853 - 11 822 49561 27 0 13 42 1 0 16 1 0 56 1 0 9 2 1 69 2 0 45 1 0 533 chain 18428 chr3 198022430 + 63164296 63164509 L1PA5 6144 + 5925 6138 131698 213 chain 38585 chr3 198022430 + 63168934 63169381 L1PA7 6471 - 1527 1974 70471 447 chain 127174 chr3 198022430 + 63169381 63170892 L1PA7 6471 + 4944 6452 28772 5 1 0 164 0 1 508 2 0 686 11 10 134 chain 18323 chr3 198022430 + 63194791 63195009 AluYf4 310 + 79 298 132010 124 0 1 94 chain 557770 chr3 198022430 + 63197384 63203390 L1PA2 6032 - 0 6011 529 1812 0 3 526 0 1 557 0 1 3111 chain 3941 chr3 198022430 + 63215498 63215546 MADE1 96 + 47 95 208247 48 chain 26954 chr3 198022430 + 63219702 63220056 THE1B 368 - 0 368 96435 168 2 0 26 1 0 35 0 2 78 0 15 44 chain 9785 chr3 198022430 + 63235162 63235366 L1PB1 5432 + 5240 5424 161678 40 1 0 14 25 14 18 8 6 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 68868 chr3 198022430 + 63239231 63240003 L1PA4 6152 + 5379 6152 48865 519 1 0 246 0 2 6 chain 521750 chr3 198022430 + 63241293 63247387 L1PA3long 6157 + 4 6142 4991 157 10 38 375 0 1 124 1 8 760 1 0 88 0 2 801 2 0 825 1 0 339 0 1 165 2 1 668 0 4 520 0 1 60 1 0 369 0 5 9 13 14 803 chain 24990 chr3 198022430 + 63247421 63247705 L1PA4 6152 + 5859 6143 104857 284 chain 404864 chr3 198022430 + 63298926 63304790 L1PB1 5432 - 22 5326 9951 8 1 0 11 1 0 18 1 0 26 3 1 38 25 13 14 1 0 44 1 0 15 3 2 41 0 2 10 2 0 9 16 11 13 1 0 20 526 11 173 0 7 121 1 0 99 8 0 364 22 13 115 1 0 484 1 0 670 0 5 210 1 0 348 2 3 774 7 9 52 2 1 49 0 5 189 2 0 8 5 0 6 0 7 7 1 0 5 21 3 55 0 1 364 0 1 411 1 0 300 0 1 137 chain 4276 chr3 198022430 + 63320699 63320748 MADE1 96 - 1 50 203522 49 chain 28400 chr3 198022430 + 63326095 63326394 AluYa5 310 - 11 310 91580 299 chain 9197 chr3 198022430 + 63333398 63333513 L1PB4 2604 - 101 221 164571 11 0 4 76 0 1 28 chain 14805 chr3 198022430 + 63359795 63360022 L1PREC2 3366 - 1213 1440 141921 96 37 36 57 0 1 37 chain 63232 chr3 198022430 + 63360653 63361390 L1PA6 6164 + 5410 6149 51349 92 0 1 500 8 9 137 chain 81561 chr3 198022430 + 63365365 63366286 L1PA5 6144 - 0 921 42949 921 chain 56873 chr3 198022430 + 63366286 63366940 L1P1 4361 + 3690 4341 54440 458 1 0 157 1 0 23 2 1 12 chain 2833 chr3 198022430 + 63370739 63370817 MER113 458 - 5 80 228191 14 33 30 31 chain 118821 chr3 198022430 + 63402615 63404187 THE1B-int 1605 - 0 1605 31479 102 1 0 4 0 1 136 15 15 75 3 0 296 1 2 292 1 0 163 1 0 9 0 1 53 3 28 66 0 11 39 5 6 4 1 0 22 1 2 4 1 0 274 chain 3986 chr3 198022430 + 63481415 63481558 L1MC1 2226 + 2010 2128 207595 34 61 39 20 7 5 13 1 0 7 chain 12377 chr3 198022430 + 63487598 63487862 MER33 330 + 45 295 150726 80 1 0 4 11 12 14 1 0 15 14 13 18 14 15 66 2 0 6 11 0 7 chain 23114 chr3 198022430 + 63504607 63504902 L1PREC2 3366 - 1304 1601 115077 239 0 1 41 1 2 14 chain 6595 chr3 198022430 + 63531115 63531196 5S 121 + 0 90 180493 29 0 9 52 chain 23724 chr3 198022430 + 63539402 63539687 AluSp 311 - 17 301 111910 237 10 9 38 chain 37391 chr3 198022430 + 63568587 63569053 LTR7C 471 - 0 471 72967 16 5 6 77 0 1 97 0 3 271 chain 226652 chr3 198022430 + 63575152 63577608 L1PA2 6032 + 3537 6030 17504 210 0 1 1663 0 1 475 1 0 75 0 36 32 chain 10926 chr3 198022430 + 63581679 63581802 L1PA3long 6157 - 6 129 156506 123 chain 24281 chr3 198022430 + 63622939 63623297 THE1D 372 + 0 369 108767 107 0 1 60 0 4 6 15 16 26 17 23 97 1 0 29 chain 546149 chr3 198022430 + 63630846 63637009 L1PA4 6152 + 0 6151 1924 327 1 4 118 19 13 114 1 0 684 20 0 712 0 1 230 1 0 961 0 2 16 0 1 69 0 9 2890 chain 23731 chr3 198022430 + 63657977 63658562 MER47A 366 - 13 346 111879 237 245 0 65 15 9 7 1 0 15 chain 3776 chr3 198022430 + 63661302 63661344 MLT1A0 366 + 252 294 210725 42 chain 14973 chr3 198022430 + 63675556 63675721 L1PA3long 6157 + 5987 6152 141402 165 chain 522406 chr3 198022430 + 63679607 63686057 L1PA6 6164 + 0 6162 4916 63 1 2 402 1 0 792 312 0 418 0 1 19 1 2 228 0 1 287 1 0 975 0 2 359 4 6 146 1 0 395 0 1 245 0 8 10 0 4 28 0 1 20 1 6 593 0 1 794 3 0 342 0 2 9 chain 3049 chr3 198022430 + 63693657 63693692 LTR16A2 485 - 50 85 224019 35 chain 141922 chr3 198022430 + 63706655 63708500 L1PA11 4918 + 2673 4507 25837 202 0 1 108 3 0 219 13 7 456 6 9 574 1 0 4 1 2 75 12 8 55 2 1 13 2 0 67 13 14 19 chain 29872 chr3 198022430 + 63716469 63717010 L1PB 1623 + 1066 1572 85195 240 9 6 134 1 0 6 3 2 15 114 84 19 chain 541823 chr3 198022430 + 63718988 63725018 L1PA3long 6157 + 0 6157 2538 152 0 1 211 0 1 403 10 138 1938 0 1 2161 0 1 1141 5 0 9 chain 64565 chr3 198022430 + 63730546 63731300 L1PA7 6471 + 5714 6469 50770 445 0 1 309 chain 3622 chr3 198022430 + 63748467 63748508 L1MC1 2226 + 2006 2047 213302 41 chain 34777 chr3 198022430 + 63750904 63751286 L1PA3long 6157 - 11 392 76510 248 1 0 133 chain 172640 chr3 198022430 + 63756561 63758462 L1PA3long 6157 - 0 1901 21748 1901 chain 26038 chr3 198022430 + 63759785 63760102 AluY 311 + 0 311 99864 126 6 0 185 chain 140602 chr3 198022430 + 63765672 63767263 L1PA4 6152 - 0 1597 26055 6 0 5 328 0 1 23 0 2 238 4 0 60 0 3 857 1 0 74 chain 4989 chr3 198022430 + 63777228 63777291 MER5B 177 - 39 102 195256 6 1 0 23 0 1 33 chain 4031 chr3 198022430 + 63795491 63795541 MADE1 96 - 0 50 206902 50 chain 11090 chr3 198022430 + 63797855 63798024 MER30 238 - 0 177 155845 46 3 0 59 15 26 46 chain 3361 chr3 198022430 + 63869761 63869799 L1MC3 1789 + 1091 1129 217853 38 chain 11137 chr3 198022430 + 63887102 63887258 L1MA8 2339 - 220 373 155678 20 2 0 90 1 0 43 chain 32060 chr3 198022430 + 63912464 63912889 L1PA8 5853 - 125 548 80756 35 7 6 6 1 0 72 2 0 45 1 0 48 0 1 86 1 2 111 0 1 10 chain 11384 chr3 198022430 + 63975131 63975386 MER2 342 + 0 266 154761 26 61 64 14 9 5 13 2 0 20 0 13 28 6 7 76 chain 3344 chr3 198022430 + 64017384 64017424 MIR 256 - 147 187 218147 40 chain 3112 chr3 198022430 + 64057171 64057206 MLT1J 494 - 211 246 222699 35 chain 13337 chr3 198022430 + 64075522 64075689 LTR28 1034 + 155 323 146944 148 2 3 17 chain 4955 chr3 198022430 + 64088857 64088946 MER20 218 + 52 143 195646 24 18 20 47 chain 4547 chr3 198022430 + 64093707 64093868 MER58A 224 + 26 201 200252 37 91 105 33 chain 237434 chr3 198022430 + 64100282 64103701 L1PA13 3608 + 135 3522 16913 4 1 0 25 2 1 12 3 0 29 25 12 71 2 0 73 61 83 9 1 0 7 6 2 17 2 1 12 1 0 7 2 1 15 2 0 18 4 3 94 2 0 354 0 2 322 6 8 85 0 1 342 1 0 158 1 0 36 1 0 45 0 4 428 7 0 6 0 6 37 6 7 4 1 0 64 22 19 236 0 1 106 1 0 15 0 1 4 1 0 210 1 0 28 1 0 73 0 1 5 1 0 31 7 5 60 1 0 51 1 0 10 2 0 27 1 0 21 8 4 18 1 0 15 1 4 12 18 7 14 1 0 4 chain 15218 chr3 198022430 + 64153954 64154170 MER30 238 - 9 238 140723 30 3 0 61 2 0 6 4 22 110 chain 4691 chr3 198022430 + 64165394 64165449 MER82 654 + 570 625 198621 55 chain 5177 chr3 198022430 + 64167766 64167829 MSTD 398 + 19 83 193263 8 0 1 55 chain 3230 chr3 198022430 + 64171071 64171109 MADE1 96 - 52 90 220421 38 chain 5994 chr3 198022430 + 64278665 64278835 MER20 218 - 78 208 185297 44 44 31 5 2 0 12 1 0 13 4 0 5 20 0 20 chain 3958 chr3 198022430 + 64288026 64288075 MER103C 291 - 117 166 208014 49 chain 3637 chr3 198022430 + 64415735 64415813 MADE1 96 + 0 93 213027 20 9 25 25 5 4 19 chain 9391 chr3 198022430 + 64415950 64416083 L1PA8 5853 + 5722 5853 163610 18 2 1 19 2 1 92 chain 3598 chr3 198022430 + 64437228 64437268 MER5B 177 + 55 95 213679 40 chain 543204 chr3 198022430 + 64461477 64467635 L1PA4 6152 + 8 6151 2312 452 6 0 120 1 0 234 21 9 467 0 1 1499 0 1 381 5 6 1073 0 1 368 0 1 1368 1 0 162 chain 5879 chr3 198022430 + 64487657 64487724 MER5A1 166 - 97 164 186386 67 chain 23737 chr3 198022430 + 64491648 64491927 L1PA5 6144 + 5856 6134 111852 140 1 0 138 chain 3643 chr3 198022430 + 64517397 64517438 MER53 195 + 147 188 212924 41 chain 10874 chr3 198022430 + 64517938 64518184 MER47A 366 - 116 366 156681 124 1 3 14 89 91 18 chain 275593 chr3 198022430 + 64528283 64531443 L1PA5 6144 + 2972 6143 14895 600 1 0 777 0 4 385 0 1 554 1 5 88 0 3 593 7 6 13 0 1 141 chain 3422 chr3 198022430 + 64532054 64532094 Tigger4a 237 + 100 140 216738 40 chain 19726 chr3 198022430 + 64626998 64627214 L1PA3long 6157 - 0 216 128028 216 chain 21482 chr3 198022430 + 64689862 64690125 AluSc 308 + 43 306 122208 263 chain 44590 chr3 198022430 + 64717572 64718091 L1PA7 6471 + 5948 6470 63492 146 0 2 235 0 1 138 chain 7349 chr3 198022430 + 64719463 64719559 MLT1B 390 - 10 107 175102 16 3 4 77 chain 14137 chr3 198022430 + 64732550 64732906 THE1B 368 - 0 368 144082 56 4 5 57 77 81 31 31 32 20 33 39 47 chain 23236 chr3 198022430 + 64738843 64739192 L1PA13 3608 - 122 570 114517 20 1 0 18 2 0 4 2 0 48 2 0 10 1 0 50 1 0 15 0 107 29 1 0 57 4 3 43 5 8 36 chain 513916 chr3 198022430 + 64762169 64768961 L1PA7 6471 + 3 6470 5787 374 3 4 104 0 1 176 37 37 302 0 1 4 1 0 57 1 0 161 0 1 679 0 3 150 0 1 578 25 0 474 55 8 183 1 0 202 1 0 487 0 1 160 6 7 56 0 1 20 0 1 166 0 2 160 17 15 90 1 9 65 0 1 158 1 2 45 1 0 157 9 27 169 342 45 274 1 0 77 0 2 364 13 19 373 0 2 12 chain 4894 chr3 198022430 + 64765295 64765350 L1PA7 6471 - 3168 3223 192512 55 chain 36314 chr3 198022430 + 64804351 64804748 L1PA3long 6157 - 1754 2151 74242 397 chain 158979 chr3 198022430 + 64804748 64806487 L1PA3long 6157 + 4418 6157 23467 1739 chain 4576 chr3 198022430 + 64862478 64862546 MER3 215 - 89 201 199913 33 5 49 30 chain 23112 chr3 198022430 + 64865746 64866150 THE1C 375 - 2 375 115083 23 1 0 10 46 14 128 17 14 31 16 0 9 0 20 36 0 1 87 chain 49224 chr3 198022430 + 64871194 64871787 L1PA5 6144 - 5 608 59572 18 2 12 573 chain 13717 chr3 198022430 + 64898008 64898370 THE1B 368 + 0 368 145550 73 23 22 12 48 46 16 61 71 27 1 0 28 17 17 56 chain 8901 chr3 198022430 + 64923529 64923638 AluJr 308 - 183 292 166134 109 chain 4068 chr3 198022430 + 64941810 64941856 MADE1 96 - 50 96 206348 46 chain 346334 chr3 198022430 + 64964597 64968416 L1PA3long 6157 + 2330 6152 11717 564 0 1 396 0 1 1864 0 1 995 chain 3071 chr3 198022430 + 64972845 64972879 LTR8 732 + 582 616 223536 34 chain 58633 chr3 198022430 + 64986626 64987297 L1PA5 6144 + 5456 6127 53619 671 chain 17317 chr3 198022430 + 65014270 65014645 THE1B 368 + 2 356 134741 109 0 3 6 49 15 23 37 35 7 0 5 4 1 0 4 0 1 11 17 25 56 7 6 44 chain 6361 chr3 198022430 + 65035999 65036082 MLT1D 503 - 366 451 182303 71 0 2 12 chain 469669 chr3 198022430 + 65040034 65045549 L1PA6 6164 + 629 6159 8044 82 0 5 448 0 1 209 0 1 74 0 5 865 12 1 7 0 11 469 5 6 360 0 2 951 3 0 1189 1 0 691 0 3 5 3 4 141 chain 97265 chr3 198022430 + 65050460 65051608 L1PA5 6144 + 4976 6132 37491 167 0 1 15 7 8 643 5 6 68 0 1 32 0 4 211 chain 26387 chr3 198022430 + 65058296 65058671 THE1C 375 - 0 368 98461 26 1 0 126 7 10 52 5 0 42 21 17 95 chain 89802 chr3 198022430 + 65060541 65061953 L1PA7 6471 - 18 1143 39723 175 0 1 63 0 3 79 0 1 143 4 0 117 0 13 39 2 0 103 9 6 31 298 5 51 3 0 295 chain 24334 chr3 198022430 + 65061309 65061592 L1PA7 6471 + 5982 6269 108455 149 0 1 80 0 3 54 chain 57100 chr3 198022430 + 65077954 65078638 LTR12_ 688 + 0 688 54470 183 0 1 328 1 0 132 0 4 40 chain 21609 chr3 198022430 + 65088073 65088722 THE1D 372 + 0 358 121737 63 0 1 4 1 0 25 11 12 52 328 37 146 1 0 18 chain 4083 chr3 198022430 + 65089272 65089338 MLT2A1 477 + 411 465 206167 12 12 0 42 chain 528533 chr3 198022430 + 65105581 65111888 L1PA4 6152 + 18 6152 4352 438 16 20 1904 0 1 54 0 4 255 5 0 8 1 6 469 184 0 511 0 2 206 1 2 2140 0 1 64 2 0 49 chain 15117 chr3 198022430 + 65108746 65108915 L1PA4 6152 - 3292 3461 139975 169 chain 45806 chr3 198022430 + 65183997 65184851 L1PB1 5432 - 5 749 62225 5 2 0 18 1 0 13 1 0 21 1 0 26 2 0 13 1 0 4 2 0 30 15 1 14 6 5 39 2 1 16 2 1 48 21 15 11 1 0 1 3 0 7 1 0 23 23 0 12 51 0 19 0 3 16 7 7 12 2 9 7 7 0 218 1 0 77 0 1 19 1 0 32 chain 46081 chr3 198022430 + 65199642 65200179 L1PA7 6471 - 16 547 61964 47 10 4 480 chain 31455 chr3 198022430 + 65202975 65203354 L1PA6 6164 - 2 383 81726 9 0 2 140 0 1 191 2 1 37 chain 225659 chr3 198022430 + 65203357 65205938 L1PA5 6144 - 6 2588 17548 849 1 0 228 2 1 722 1 2 653 0 2 125 chain 40029 chr3 198022430 + 65205946 65206536 L1P2 5180 - 4586 5178 69279 79 1 0 8 2 1 106 1 0 24 0 8 96 48 47 31 1 0 44 1 0 148 chain 18793 chr3 198022430 + 65210601 65210905 THE1B 368 + 0 306 130699 161 21 20 20 8 13 10 7 6 12 2 1 63 chain 5285 chr3 198022430 + 65219963 65220024 L1PA2 6032 + 5968 6029 192154 61 chain 179929 chr3 198022430 + 65238458 65240576 L1PA7 6471 - 4 2132 21000 8 2 0 153 7 8 352 0 1 235 1 0 93 0 3 943 3 11 321 chain 54150 chr3 198022430 + 65246407 65247305 L1PA17 2846 + 1615 2502 56263 240 1 0 67 46 28 86 0 1 4 1 0 11 57 54 33 1 0 214 47 53 13 0 4 11 0 2 66 chain 71287 chr3 198022430 + 65247357 65248153 L1PA4 6152 + 5271 6067 47808 796 chain 6350 chr3 198022430 + 65248153 65248224 L1PA4 6152 + 6070 6141 182375 71 chain 25541 chr3 198022430 + 65253811 65254175 THE1B 368 + 0 368 102048 169 1 0 29 0 3 6 3 7 14 14 12 67 1 0 4 0 1 56 chain 129222 chr3 198022430 + 65255150 65256604 L1PA4 6152 + 3914 5372 28260 569 1 3 669 0 2 215 chain 69959 chr3 198022430 + 65256604 65257382 L1PA4 6152 + 5373 6151 48407 778 chain 21612 chr3 198022430 + 65265364 65265678 MER41C 542 - 225 542 121724 45 10 14 231 15 14 13 chain 27523 chr3 198022430 + 65287191 65287621 MER41E 591 + 0 429 94594 28 0 3 18 1 2 58 0 3 8 0 1 4 1 0 105 5 6 59 1 3 63 6 5 10 30 20 33 chain 14126 chr3 198022430 + 65434793 65434961 L1PA5 6144 + 5978 6142 144122 157 4 0 7 chain 25202 chr3 198022430 + 65439917 65440201 L1PA3long 6157 + 5858 6142 103731 284 chain 230538 chr3 198022430 + 65446235 65449693 L1PA7 6471 - 12 2893 17281 7 0 1 128 28 26 456 7 24 8 593 0 185 0 3 56 1 4 567 3 5 4 1 0 351 1 0 192 1 18 36 0 1 373 45 21 415 chain 24628 chr3 198022430 + 65478492 65478770 AluY 311 + 21 300 106838 111 0 1 167 chain 461252 chr3 198022430 + 65494967 65500000 L1HS 6032 + 1 5035 8353 148 1 3 6 2 0 155 0 1 4721 chain 91414 chr3 198022430 + 65500000 65500991 L1PA2 6032 + 5035 6026 39163 991 chain 28915 chr3 198022430 + 65502393 65502702 AluYa5 310 - 2 310 89394 182 1 0 126 chain 231077 chr3 198022430 + 65526768 65529579 L1PA7 6471 + 3630 6461 17251 417 1 2 629 0 2 308 0 15 103 9 11 148 0 1 87 0 1 267 4 0 77 0 2 43 5 7 558 9 0 7 4 12 123 1 0 11 chain 5375 chr3 198022430 + 65547605 65547719 MER44A 345 + 70 174 191249 31 2 0 8 21 14 6 1 0 45 chain 24758 chr3 198022430 + 65551656 65551950 AluSx4 309 + 8 302 106123 294 chain 14480 chr3 198022430 + 65572839 65573071 MER47A 366 - 0 257 142953 16 44 69 172 chain 5120 chr3 198022430 + 65654526 65654601 HSMAR2 1300 - 120 194 193871 56 6 5 13 chain 17096 chr3 198022430 + 65654618 65654843 AluSg7 307 - 20 241 135326 48 10 5 102 0 1 65 chain 22227 chr3 198022430 + 65663562 65663816 L1PA7 6471 + 6025 6279 119220 254 chain 15412 chr3 198022430 + 65663817 65664008 L1PA7 6471 + 6281 6469 140162 178 3 0 10 chain 24702 chr3 198022430 + 65676706 65677006 AluY 311 + 10 311 106420 21 5 6 274 chain 277374 chr3 198022430 + 65682546 65685565 L1PA2 6032 + 3015 6032 14786 46 3 1 2970 chain 15554 chr3 198022430 + 65735048 65735345 L1PB1 5432 + 5159 5427 139717 10 2 0 51 2 1 15 1 0 44 1 0 16 3 0 6 16 6 19 2 0 6 1 0 15 2 0 22 1 0 14 8 7 13 1 0 14 1 0 4 2 0 5 chain 6783 chr3 198022430 + 65792141 65792221 MER57B1 401 + 178 258 179083 80 chain 25341 chr3 198022430 + 65854661 65854946 AluYc3 301 + 1 287 103015 112 1 2 172 chain 13829 chr3 198022430 + 65877400 65877560 L1PA5 6144 + 5970 6131 145139 31 0 1 129 chain 12900 chr3 198022430 + 65882619 65882797 MER2 342 - 26 203 148624 9 1 0 9 2 3 7 1 0 149 chain 17965 chr3 198022430 + 65883050 65883273 L1PA6 6164 + 5912 6136 132949 110 4 5 109 chain 27330 chr3 198022430 + 65915709 65916016 AluYk4 311 + 0 307 95173 307 chain 34453 chr3 198022430 + 65916190 65916631 MER41B 635 + 0 446 76990 118 1 4 4 0 1 233 0 1 85 chain 5992 chr3 198022430 + 65936531 65936605 MER30 238 - 0 77 185314 38 0 3 36 chain 2869 chr3 198022430 + 66006887 66006966 MER3 215 - 124 204 227541 20 34 35 25 chain 2953 chr3 198022430 + 66014012 66014045 MIRb 242 - 51 84 226012 33 chain 4223 chr3 198022430 + 66034463 66034527 MER58B 340 + 64 128 204259 14 1 2 25 1 0 23 chain 89076 chr3 198022430 + 66041729 66042795 MER11C 1089 - 16 1089 39977 296 1 2 33 0 1 65 1 0 84 0 1 274 0 4 63 0 1 249 chain 29105 chr3 198022430 + 66049252 66049558 AluYb8 318 - 0 306 88527 306 chain 4260 chr3 198022430 + 66057847 66057922 MIR 256 - 21 80 203739 49 16 0 10 chain 6763 chr3 198022430 + 66060883 66060976 MSTB2 466 + 371 466 179222 32 1 3 60 chain 10797 chr3 198022430 + 66064233 66064413 MER53 195 + 14 195 157002 68 35 36 77 chain 5661 chr3 198022430 + 66065980 66066053 MER2 342 - 116 190 188463 49 0 1 24 chain 22851 chr3 198022430 + 66070056 66070335 AluSp 311 + 1 288 116332 205 1 8 58 0 1 15 chain 7298 chr3 198022430 + 66084849 66084949 L1PA16 3655 - 71 168 175461 6 3 0 91 chain 22698 chr3 198022430 + 66104569 66104853 AluY 311 + 11 296 117084 121 0 1 41 5 6 77 1 0 39 chain 6706 chr3 198022430 + 66118820 66118901 Tigger3c 601 + 142 222 179643 7 1 0 73 chain 11997 chr3 198022430 + 66133730 66133911 L1PB2 3958 - 403 577 152210 10 1 0 93 4 0 10 5 3 58 chain 3262 chr3 198022430 + 66143159 66143195 MIR 256 - 93 129 219744 36 chain 18287 chr3 198022430 + 66152481 66152781 THE1B 368 + 0 306 132110 82 4 1 86 1 0 21 43 53 63 chain 29794 chr3 198022430 + 66156467 66156777 AluYa5 310 - 0 310 85471 310 chain 24212 chr3 198022430 + 66276526 66276893 THE1B 368 - 0 368 109143 99 6 3 24 1 0 12 1 0 16 8 17 28 7 6 146 2 0 17 chain 66191 chr3 198022430 + 66323155 66323902 L1PA3long 6157 - 1939 2692 50008 600 0 2 116 0 4 31 chain 174782 chr3 198022430 + 66323902 66325834 L1PA3long 6157 + 4220 6157 21498 134 0 4 1632 0 1 166 chain 29810 chr3 198022430 + 66332420 66332734 AluYb8 318 - 4 318 85404 314 chain 384654 chr3 198022430 + 66338760 66343537 L1PA7 6471 - 12 4831 10624 133 9 6 699 1 0 15 0 4 159 0 1 248 0 4 114 1 0 5 0 1 55 0 1 336 0 4 478 0 1 642 0 4 35 31 30 26 1 6 42 0 4 85 9 8 210 3 7 222 1 2 226 5 6 155 1 0 69 12 15 237 0 4 75 0 1 79 1 0 12 0 10 5 1 0 225 1 0 113 chain 32453 chr3 198022430 + 66344386 66344880 L1PA13 3608 - 178 664 80107 32 2 0 7 3 0 35 1 0 21 1 0 30 5 0 30 3 1 97 1 2 15 1 0 28 1 0 36 7 0 6 4 18 128 chain 3802 chr3 198022430 + 66353427 66353470 MER20 218 - 86 129 210368 43 chain 443373 chr3 198022430 + 66356929 66362644 L1PA8 5853 - 3 5740 8943 16 1 0 73 2 1 19 2 1 61 2 1 67 2 0 49 3 2 327 11 13 210 2 0 4 0 1 76 0 1 222 1 5 235 2 1 92 0 1 38 1 0 370 15 15 238 61 40 28 16 4 363 0 16 21 5 12 263 5 13 13 0 4 52 9 5 145 11 12 151 0 5 656 0 2 86 2 6 67 8 10 366 0 1 234 0 2 348 0 3 369 10 10 95 7 11 161 3 5 19 chain 277889 chr3 198022430 + 66363979 66368006 L1PA10 4194 - 35 4019 14754 9 1 0 33 3 0 501 0 2 212 2 5 267 2 0 174 16 11 232 0 7 31 0 3 42 10 0 23 1 3 164 19 20 92 0 2 138 1 0 4 0 1 25 0 4 42 1 0 4 1 2 86 17 21 354 1 0 33 1 0 5 0 1 30 1 0 374 12 13 33 3 1 62 1 0 133 22 23 46 0 10 19 0 5 282 1 0 91 2 0 42 0 1 46 10 0 15 2 1 9 1 0 6 2 1 7 1 0 14 12 10 13 51 25 8 1 0 15 3 1 20 1 0 9 1 0 9 2 0 12 43 32 13 chain 5121 chr3 198022430 + 66373827 66373923 LTR8 732 - 39 134 193858 45 25 23 18 0 1 8 chain 18247 chr3 198022430 + 66440222 66440510 HSMAR2 1300 - 0 319 132215 28 6 27 37 17 19 48 0 7 70 7 8 75 chain 25969 chr3 198022430 + 66471240 66471608 THE1B 368 - 0 368 100139 75 1 0 65 3 4 25 7 6 19 3 2 124 1 3 45 chain 119101 chr3 198022430 + 66471613 66473180 THE1B-int 1605 - 5 1605 31372 141 0 1 157 0 36 55 2 1 194 45 12 209 15 16 324 1 26 190 0 1 121 1 4 112 chain 34972 chr3 198022430 + 66563400 66563876 Tigger1 2417 - 1342 1835 76226 152 1 0 74 0 1 197 15 12 23 0 20 14 chain 3408 chr3 198022430 + 66566205 66566304 MER58A 224 - 93 177 216952 26 45 30 28 chain 4639 chr3 198022430 + 66566461 66566521 MER91C 135 - 6 66 199205 60 chain 16353 chr3 198022430 + 66572399 66572712 THE1B 368 - 61 368 137327 58 81 74 6 1 0 78 11 12 5 0 1 73 chain 3149 chr3 198022430 + 66578316 66578352 MLT1E2 623 + 73 109 221951 36 chain 15539 chr3 198022430 + 66594237 66594979 LTR12C 1709 - 176 936 139773 39 63 31 22 234 404 27 20 61 36 41 0 54 81 3 19 42 0 64 chain 4400 chr3 198022430 + 66594773 66594841 LTR12C 1709 - 890 943 191960 46 15 0 7 chain 4063 chr3 198022430 + 66598802 66598884 Charlie4a 502 - 6 86 206445 13 1 0 29 17 16 22 chain 27250 chr3 198022430 + 66609302 66609646 THE1A 353 - 15 353 95432 71 5 0 157 1 0 110 chain 123849 chr3 198022430 + 66609651 66611187 THE1A-int 1579 - 5 1579 29751 4 0 1 208 0 1 598 25 60 121 7 6 85 0 1 329 0 1 159 chain 24647 chr3 198022430 + 66611187 66611509 THE1A 353 - 0 317 106736 203 8 0 40 1 0 39 0 3 24 0 1 7 chain 25797 chr3 198022430 + 66629359 66629715 THE1B 368 - 0 368 100887 176 2 0 7 2 1 115 10 25 44 chain 13586 chr3 198022430 + 66632522 66632726 MER30 238 - 0 236 146033 9 1 0 106 4 17 60 10 30 14 chain 23992 chr3 198022430 + 66646009 66646310 AluY 311 + 3 305 110370 116 4 5 181 chain 3658 chr3 198022430 + 66662936 66662977 MER3 215 - 0 41 212595 41 chain 26425 chr3 198022430 + 66671544 66671843 AluYk4 311 + 0 298 98326 105 1 0 193 chain 14794 chr3 198022430 + 66686427 66686759 L1PB1 5432 - 10 312 141949 18 1 0 11 1 0 23 1 0 16 66 52 6 2 0 16 1 0 43 1 0 16 2 1 52 2 0 9 5 1 14 3 2 8 1 0 14 chain 3927 chr3 198022430 + 66700966 66701014 MER3 215 + 89 138 208455 44 0 1 4 chain 112796 chr3 198022430 + 66701812 66703195 LTR12C 1709 + 0 1709 33444 297 0 1 40 9 52 260 0 278 184 1 0 4 4 2 106 0 4 279 0 4 113 2 1 84 chain 18536 chr3 198022430 + 66703228 66703474 AluSg7 307 + 38 285 131405 93 0 1 6 7 4 7 0 3 133 chain 21940 chr3 198022430 + 66724216 66724537 MER1A 529 + 215 527 120462 151 12 0 77 15 18 66 chain 26733 chr3 198022430 + 66781550 66781915 THE1B 368 + 0 368 97213 102 2 1 66 1 0 29 0 3 8 1 5 18 2 1 7 1 0 128 chain 447453 chr3 198022430 + 66814096 66820218 L1PA7 6471 - 10 6466 8830 845 0 2 754 8 9 46 0 2 521 1 0 576 0 3 595 13 5 98 2 0 5 1 3 99 0 3 262 4 5 555 0 1 457 146 155 97 0 2 5 9 7 84 1 30 120 17 0 47 2 23 14 19 18 106 36 114 31 77 86 9 0 19 14 121 318 168 26 12 131 chain 168624 chr3 198022430 + 66820231 66822704 L1P3 4156 - 1983 4155 22208 14 0 4 23 0 1 78 0 4 464 0 13 107 24 29 315 323 0 38 6 1 132 1 2 686 24 23 238 chain 5360 chr3 198022430 + 66846798 66846864 MIRb 242 + 68 134 191430 66 chain 29138 chr3 198022430 + 66852258 66852771 L1PA16 3655 + 3169 3617 88375 36 1 0 85 2 0 109 36 5 47 1 0 22 0 1 41 0 4 51 55 26 7 6 0 14 chain 6929 chr3 198022430 + 66862666 66862750 MER58A 224 - 114 198 177975 84 chain 15528 chr3 198022430 + 66887658 66887864 L1PA7 6471 + 6279 6469 139805 37 1 0 143 15 0 10 chain 8329 chr3 198022430 + 66887866 66888012 Tigger3b 1229 - 336 482 169227 27 1 5 70 25 21 23 chain 4642 chr3 198022430 + 66892056 66892207 MER3 215 + 53 206 199148 35 84 86 32 chain 538812 chr3 198022430 + 66893225 66899367 L1PA3long 6157 + 2 6157 3024 113 5 6 576 0 7 754 0 1 257 1 0 1816 0 1 879 0 5 967 1 0 773 chain 44238 chr3 198022430 + 66902644 66903199 MLT2A2 560 - 0 560 63901 108 0 1 131 7 9 107 0 2 202 chain 5922 chr3 198022430 + 66932295 66932369 L1P5 443 + 363 437 185969 74 chain 14345 chr3 198022430 + 66932488 66932842 L1PB1 5432 + 5105 5423 143397 10 7 0 23 28 22 8 2 0 52 23 26 6 5 0 29 1 0 13 2 1 7 2 0 9 7 0 15 3 1 5 1 0 14 7 5 19 1 0 22 1 0 12 1 0 19 chain 26646 chr3 198022430 + 66933053 66933356 AluSp 311 - 0 303 97492 303 chain 450044 chr3 198022430 + 66943777 66950718 L1PA8 5853 + 50 5853 8766 22 2 0 10 1 0 6 64 25 192 0 4 211 0 1 136 8 9 16 0 3 5 3 0 748 0 4 42 1 2 169 0 8 91 0 1 113 0 9 135 7 6 17 0 1 17 0 1 40 7 8 169 1 5 210 0 4 304 0 1 127 0 13 560 11 10 500 2 1 53 0 4 363 1156 0 300 0 9 197 0 1 78 6 5 70 0 1 417 11 12 48 1 0 43 5 3 72 8 6 52 2 1 19 1 0 13 7 8 72 chain 77479 chr3 198022430 + 66948146 66949296 MER11A 1151 + 0 1151 44747 109 1 90 31 88 1 63 0 2 6 1 0 221 0 1 90 1 2 69 1 0 112 10 9 55 5 2 7 35 0 4 0 35 118 0 1 123 chain 13296 chr3 198022430 + 66954088 66954255 THE1B 368 - 54 220 147100 141 2 1 24 chain 368631 chr3 198022430 + 66966090 66970349 L1PA4 6152 + 10 6152 11134 117 0 14 14 0 339 678 0 4 368 0 1539 855 0 1 845 19 0 606 1 0 606 8 9 136 0 5 6 chain 34005 chr3 198022430 + 66987410 66987833 MER57A1 433 - 0 433 77608 151 1 0 4 0 1 244 0 10 23 chain 24723 chr3 198022430 + 67007406 67007702 L1PA7 6471 + 6176 6468 106305 285 4 0 7 chain 13595 chr3 198022430 + 67037722 67037877 L1PA7 6471 + 6313 6468 145996 155 chain 29073 chr3 198022430 + 67038804 67039110 AluYb8 318 - 12 318 88669 306 chain 5076 chr3 198022430 + 67046951 67047012 MER53 195 - 1 62 194337 61 chain 250465 chr3 198022430 + 67090861 67094174 HERVH-int 3825 - 265 3825 16213 193 13 14 55 1 0 282 1 0 22 8 20 311 0 1 244 5 4 5 0 1 104 2 1 7 0 1 193 11 16 234 16 17 404 9 0 184 43 13 456 1 0 22 1 152 16 13 131 27 21 20 77 1 0 13 6 8 44 13 13 255 chain 136236 chr3 198022430 + 67102819 67104540 L1PA8 5853 - 0 1737 26791 93 1 0 17 1 0 51 1 0 13 4 3 14 4 5 48 2 0 45 1 0 48 0 1 429 1 2 74 2 0 6 2 0 179 0 1 333 1 0 70 0 7 43 2 1 120 0 6 15 0 11 31 0 1 70 chain 94279 chr3 198022430 + 67110105 67111184 MER11C 1089 + 0 1079 38271 569 1 0 174 0 1 335 chain 28849 chr3 198022430 + 67119259 67119561 AluYb8 318 - 16 318 89676 302 chain 12636 chr3 198022430 + 67178752 67179032 L1PB1 5432 + 5160 5422 149701 8 2 0 42 15 14 12 1 0 44 1 0 16 2 0 6 16 6 18 3 1 5 1 0 14 13 18 6 1 0 21 1 0 13 1 0 18 chain 455339 chr3 198022430 + 67186426 67192673 L1PA8 5853 - 0 5801 8566 91 3 2 16 1 0 52 17 15 69 2 0 46 1 0 40 0 2 440 9 10 61 0 2 637 5 0 208 0 3 258 2 0 855 2 0 441 1 2 73 407 1 40 0 4 99 4 0 100 8 12 98 0 1 65 1 2 15 0 4 915 19 19 104 0 1 206 6 0 82 1 2 24 2 1 144 0 11 13 11 0 258 3 7 194 52 13 13 1 0 11 6 4 15 chain 30259 chr3 198022430 + 67189814 67190163 L1PA5 6144 - 9 358 84034 349 chain 553698 chr3 198022430 + 67198073 67204221 L1PA3long 6157 + 6 6156 980 3940 0 1 1184 0 1 1024 chain 499630 chr3 198022430 + 67204410 67210853 L1PA7 6471 + 0 6470 6856 208 7 8 28 0 10 156 0 2 82 17 16 51 1 2 92 1 0 4 0 1 49 41 43 162 0 3 5 3 0 67 13 14 198 0 1 341 7 0 92 2 0 261 0 3 125 0 1 136 0 2 260 24 23 13 0 1 171 2 1 9 13 6 917 2 15 174 1 4 25 1 2 493 6 8 225 8 11 430 1 0 332 0 7 8 7 0 85 4 0 40 0 1 288 0 3 755 chain 57191 chr3 198022430 + 67223513 67224239 L1PA7 6471 - 9 745 54412 152 15 16 57 7 11 12 0 2 219 0 3 264 chain 4217 chr3 198022430 + 67233792 67233948 MER58A 224 - 9 166 204334 48 89 90 19 chain 115743 chr3 198022430 + 67236394 67238001 THE1B-int 1605 - 6 1605 32547 372 18 20 5 0 1 128 4 0 32 8 6 247 24 33 63 6 7 224 48 31 413 0 2 15 chain 17603 chr3 198022430 + 67253916 67254205 THE1D 372 + 81 372 133987 72 4 5 20 1 0 4 42 42 45 0 1 72 0 1 29 chain 4804 chr3 198022430 + 67278661 67278728 LTR32 486 - 411 474 197307 19 0 1 28 5 0 15 chain 70968 chr3 198022430 + 67286277 67287066 L1PA4 6152 + 5359 6149 47942 538 0 1 251 chain 110830 chr3 198022430 + 67303389 67304916 THE1D-int 1627 + 37 1625 33994 147 0 16 211 0 18 148 1 0 67 6 9 56 7 16 5 3 0 11 15 34 227 1 0 172 16 17 13 0 1 178 12 13 4 1 0 177 1 0 48 chain 148001 chr3 198022430 + 67305078 67306971 L1PA8 5853 + 3900 5853 24879 11 0 45 7 0 4 223 0 1 814 1 4 61 20 17 65 5 7 112 0 2 290 2 1 44 2 0 20 1 13 38 1 0 9 1 0 6 0 1 45 2 1 19 1 0 93 chain 187272 chr3 198022430 + 67314941 67316989 L1PA3long 6157 - 0 2048 20312 2048 chain 71773 chr3 198022430 + 67324788 67325583 L1PA3long 6157 + 5362 6157 47579 795 chain 25623 chr3 198022430 + 67329599 67329895 L1P1 4361 - 1285 1581 101608 296 chain 261723 chr3 198022430 + 67329895 67332833 L1PA5 6144 + 3197 6141 15606 732 0 3 726 8 7 247 0 1 369 0 1 8 0 4 88 1 0 142 1 0 616 chain 2944 chr3 198022430 + 67399882 67399918 MIR 256 + 98 134 226232 36 chain 10831 chr3 198022430 + 67400379 67400550 L1PA8A 6298 + 6144 6290 156864 99 31 6 41 chain 555853 chr3 198022430 + 67443462 67449605 L1PA3long 6157 + 6 6157 741 734 0 2 1780 0 2 1833 0 4 1796 chain 322841 chr3 198022430 + 67477941 67481864 L1P2 5180 + 2 3981 12491 39 3 19 83 7 6 98 1 0 260 1 0 8 1 0 73 0 22 27 5 4 146 1 0 5 1 0 141 0 25 988 0 2 744 2 1 71 0 1 315 1 0 563 1 2 50 2 0 286 chain 39051 chr3 198022430 + 67481864 67482313 L1PA6 6164 + 5707 6158 70663 393 0 2 56 chain 276776 chr3 198022430 + 67488464 67491803 L1PA7 6471 + 3117 6470 14829 375 16 5 77 0 5 898 0 4 184 0 4 815 1 0 118 0 4 8 1 0 75 0 1 446 0 1 22 0 1 292 0 7 11 chain 28218 chr3 198022430 + 67492436 67492733 AluYa5 310 - 13 310 92239 297 chain 135419 chr3 198022430 + 67493838 67496062 SVA_F 1814 + 335 1814 26936 553 1 0 60 324 15 164 306 0 44 129 0 643 chain 9819 chr3 198022430 + 67494455 67494681 SVA_F 1814 + 966 1094 135135 40 98 0 88 chain 5923 chr3 198022430 + 67494515 67494580 SVA_F 1814 + 1104 1169 185963 65 chain 5876 chr3 198022430 + 67494708 67494776 SVA_F 1814 + 881 948 186419 14 1 0 53 chain 8293 chr3 198022430 + 67494946 67495039 SVA_F 1814 + 1132 1274 169444 33 0 49 60 chain 1927 chr3 198022430 + 67495086 67495129 SVA_F 1814 + 855 898 173146 43 chain 2706 chr3 198022430 + 67495143 67495228 SVA_F 1814 + 664 788 166895 44 0 40 27 1 0 13 chain 8477 chr3 198022430 + 67495290 67495386 SVA_F 1814 + 995 1089 154740 6 1 0 10 1 0 78 chain 3107 chr3 198022430 + 67495386 67495419 SVA_F 1814 + 962 995 149034 33 chain 3388 chr3 198022430 + 67512093 67512189 MER20 218 - 89 187 217329 17 45 47 34 chain 260942 chr3 198022430 + 67587472 67590719 L1PA7 6471 - 7 3236 15646 5 3 0 122 32 5 10 0 1 390 2 1 230 0 2 81 1 0 74 1 0 118 0 1 198 5 6 90 0 10 374 0 1 1168 0 4 44 2 0 6 0 1 214 4 0 73 chain 84848 chr3 198022430 + 67592598 67593649 L1P2 5180 + 1836 2903 41574 423 1 9 306 1 5 207 0 4 113 chain 20827 chr3 198022430 + 67609687 67609975 THE1D 372 - 0 294 124515 32 1 0 146 19 25 6 0 1 84 chain 4074 chr3 198022430 + 67610239 67610297 L1MC1 2226 + 2129 2185 206274 6 1 0 17 1 0 33 chain 26317 chr3 198022430 + 67635069 67635424 THE1C 375 - 19 374 98754 170 2 3 112 12 11 59 chain 28517 chr3 198022430 + 67641817 67642171 THE1A 353 + 0 353 91110 84 0 1 25 1 0 92 1 0 151 chain 3201 chr3 198022430 + 67691866 67691923 MADE1 96 - 0 95 220921 15 11 49 31 chain 1304 chr3 198022430 + 67705687 67705726 LTR12 884 + 206 245 201748 39 chain 25563 chr3 198022430 + 67705790 67706444 LTR12 884 + 59 741 101916 143 331 358 123 0 1 57 chain 6410 chr3 198022430 + 67715809 67715993 MER58A 224 + 32 224 181946 52 16 15 19 66 75 31 chain 46067 chr3 198022430 + 67764464 67765135 PRIMA4_LTR 623 - 0 622 61980 295 1 0 65 2 1 43 39 0 27 8 4 48 13 12 36 3 0 91 chain 37233 chr3 198022430 + 67773095 67773564 MER4A1 472 - 0 469 73195 469 chain 30340 chr3 198022430 + 67777282 67777640 L1P1 4361 - 4002 4360 83806 358 chain 6296 chr3 198022430 + 67801292 67801372 L1PB1 5432 - 1056 1135 182834 71 1 0 8 chain 65824 chr3 198022430 + 67801382 67802424 L1PB1 5432 + 4400 5408 50179 228 0 1 17 0 1 157 0 2 5 11 4 222 16 16 50 3 0 10 0 1 20 1 0 13 27 20 10 0 2 41 2 1 11 7 6 43 1 0 15 3 0 11 53 39 24 1 0 21 1 0 13 1 0 4 chain 8980 chr3 198022430 + 67804571 67804730 MER44B 551 - 35 198 165714 46 10 6 57 18 26 28 chain 385183 chr3 198022430 + 67809854 67814620 L1PA7 6471 - 1 4698 10601 171 1 2 282 6 12 9 0 3 370 3 0 274 7 0 9 0 7 50 0 1 695 0 3 143 0 1 933 4 3 429 2 1 430 29 17 46 1 0 271 67 0 171 0 1 363 chain 8042 chr3 198022430 + 67821319 67821421 LTR8 732 - 557 665 170795 13 0 6 89 chain 503704 chr3 198022430 + 67826048 67832494 L1PA7 6471 - 7 6466 6622 38 1 2 317 0 2 81 9 15 146 0 1 147 3 5 89 2 0 478 30 19 154 0 7 255 0 1 221 0 1 671 0 8 303 1 0 491 6 5 104 0 1 155 0 3 110 0 2 25 1 2 108 0 1 5 1 0 141 2 1 152 0 2 55 0 6 22 0 1 81 0 1 265 0 1 270 10 5 217 0 19 401 0 1 17 16 0 86 0 5 165 3 0 104 1 0 61 17 0 156 2 0 12 0 1 238 chain 24565 chr3 198022430 + 67835469 67835824 THE1B 368 + 0 366 107168 15 3 1 24 1 6 249 0 17 8 17 8 38 chain 111362 chr3 198022430 + 67844239 67845784 L1PA8A 6298 - 9 1959 33846 29 3 0 41 56 475 52 0 10 190 0 3 393 7 6 4 0 1 76 1 7 154 40 0 132 1 5 123 5 8 36 0 3 202 chain 72543 chr3 198022430 + 67864686 67865499 L1PA2 6032 - 0 786 47246 12 27 0 774 chain 53482 chr3 198022430 + 67865499 67866069 L1HS 6032 + 1462 2032 56568 570 chain 32181 chr3 198022430 + 67884373 67884804 MLT2A1 477 + 0 477 80561 140 0 1 20 8 12 91 1 2 119 3 43 49 chain 283087 chr3 198022430 + 67884960 67888425 HERVL-int 5654 + 2200 5654 14462 561 5 7 316 0 1 128 1 2 101 0 1 4 1 0 111 1 0 10 7 4 136 8 5 786 1 2 666 0 3 178 13 0 208 0 1 223 chain 32281 chr3 198022430 + 67888425 67888861 MLT2A1 477 + 0 470 80394 140 1 2 27 1 5 211 6 0 17 4 39 29 chain 21277 chr3 198022430 + 67902088 67902430 THE1B 368 - 0 368 122937 118 48 73 60 10 11 106 chain 20689 chr3 198022430 + 67913636 67913874 L1PA7 6471 - 1 240 125006 154 0 1 84 chain 28925 chr3 198022430 + 67915994 67916300 AluYa5 310 + 4 310 89349 306 chain 49414 chr3 198022430 + 67938527 67939214 LTR12_ 688 + 0 665 59446 17 8 7 58 25 0 166 0 1 64 3 2 132 12 16 202 chain 201721 chr3 198022430 + 67953986 67956217 L1PA3long 6157 - 410 2642 19087 1993 0 1 238 chain 39525 chr3 198022430 + 67965268 67965811 MLT2A2 560 - 0 560 69990 70 0 1 71 0 11 35 0 7 132 9 8 17 26 25 183 chain 8678 chr3 198022430 + 67982291 67982465 L1MB3 1562 + 1146 1320 167309 29 32 31 56 3 0 5 5 9 44 chain 3002 chr3 198022430 + 67988828 67988865 L1MCa 1829 + 1568 1605 224994 37 chain 137801 chr3 198022430 + 67998242 68000000 L1P2 5180 + 2 1801 26515 148 1 0 44 1 0 50 1 0 202 9 1 68 1 0 48 1 0 220 0 15 34 0 39 930 chain 351803 chr3 198022430 + 68000001 68004370 L1PA6 6164 + 1808 6162 11551 525 19 0 74 3 4 778 0 1 103 7 8 208 4 0 470 0 1 15 2 1 682 11 12 311 1 2 187 0 1 640 0 1 20 1 0 111 5 7 24 19 19 149 chain 10299 chr3 198022430 + 68009265 68009394 MER85 139 + 0 139 159136 94 0 10 35 chain 110057 chr3 198022430 + 68009668 68011135 L1PA8 5853 + 4378 5853 34203 500 1 2 127 0 2 75 0 2 8 1 0 60 13 14 51 3 10 334 2 1 39 7 5 31 0 2 38 1 0 9 1 0 52 2 1 19 1 0 76 1 2 15 chain 5060 chr3 198022430 + 68022257 68022329 MER33 330 + 123 194 194531 36 1 0 35 chain 5645 chr3 198022430 + 68030356 68030436 MADE1 96 - 0 96 188612 37 1 17 42 chain 41776 chr3 198022430 + 68079416 68079927 L1PA7 6471 - 2 514 66931 10 1 4 52 4 0 391 0 2 53 chain 4059 chr3 198022430 + 68096921 68096967 MADE1 96 - 50 96 206499 46 chain 109364 chr3 198022430 + 68118678 68120223 THE1B-int 1605 - 0 1578 34354 23 5 7 32 4 13 531 0 1 102 2 3 196 46 39 201 0 25 158 74 76 171 chain 543373 chr3 198022430 + 68125469 68131489 L1PA2 6032 - 13 6032 2285 1512 1 0 1347 2 1 1515 0 1 1386 1 0 184 1 2 71 chain 11363 chr3 198022430 + 68150574 68150697 L1PA4 6152 + 5732 5855 154841 123 chain 19817 chr3 198022430 + 68154022 68154408 MSTB 430 - 13 412 127757 59 7 6 45 9 13 13 42 43 26 2 10 42 11 7 10 15 19 29 0 1 76 chain 150813 chr3 198022430 + 68181036 68182873 L1PA7 6471 - 1 1856 24497 42 0 5 116 1 0 175 0 1 165 0 2 118 3 4 41 5 6 169 6 5 136 0 1 72 0 8 195 5 6 588 chain 5070 chr3 198022430 + 68266301 68266393 MADE1 96 + 11 96 194425 27 19 12 46 chain 29949 chr3 198022430 + 68280494 68280809 AluYb9 318 - 3 318 84972 315 chain 19537 chr3 198022430 + 68301910 68302217 THE1B 368 + 0 310 128549 169 1 0 5 8 7 17 10 17 13 17 15 67 chain 102644 chr3 198022430 + 68308532 68309660 L1PA4 6152 - 1446 2574 36096 1128 chain 126347 chr3 198022430 + 68309661 68311076 L1PA4 6152 + 4731 6151 28994 573 0 6 508 1 0 333 chain 27184 chr3 198022430 + 68331037 68331416 THE1C 375 - 0 375 95648 25 1 0 160 1 0 6 1 2 49 11 8 125 chain 7521 chr3 198022430 + 68342442 68342541 L1PA8 5853 + 5752 5853 174029 8 1 0 34 0 3 56 chain 25999 chr3 198022430 + 68360059 68360432 THE1B 368 - 0 368 100023 56 0 1 18 1 0 125 1 0 47 23 16 63 0 5 24 2 0 13 chain 19640 chr3 198022430 + 68393056 68393281 AluSp 311 - 75 300 128279 225 chain 10300 chr3 198022430 + 68415258 68415410 THE1B 368 - 204 357 159131 29 17 15 6 0 3 100 chain 35444 chr3 198022430 + 68420373 68420833 L1PA8 5853 - 0 454 75626 92 2 1 19 2 1 61 2 1 70 2 0 46 2 1 162 chain 232739 chr3 198022430 + 68428918 68431527 L1PA4 6152 - 1 2601 17159 266 1 0 513 1 0 1464 9 1 218 1 2 136 chain 489688 chr3 198022430 + 68438719 68445088 L1PA7 6471 + 5 6454 7383 305 8 11 87 4 6 29 1 5 602 6 8 150 4 0 52 1 2 237 2 1 261 2 0 63 0 4 471 0 1 315 0 10 7 11 0 100 0 1 362 1 5 125 1 2 301 0 1 20 0 4 19 0 4 28 10 2 221 29 23 151 2 1 481 3 64 131 0 2 269 2 0 229 6 11 187 1 0 43 0 1 63 0 1 118 17 20 17 0 1 70 3 5 55 1 2 232 65 50 253 17 18 95 0 11 23 chain 51500 chr3 198022430 + 68446308 68446986 L1PA8 5853 - 0 670 57966 15 4 5 73 1 0 16 1 0 54 1 0 8 1 0 74 2 0 46 1 0 44 14 12 323 chain 41509 chr3 198022430 + 68447125 68447623 L1PA8 5853 + 4250 4748 67269 112 3 2 316 0 1 67 chain 81902 chr3 198022430 + 68461537 68462477 L1PA5 6144 - 9 950 42802 841 1 0 50 0 2 48 chain 34260 chr3 198022430 + 68467292 68467797 LTR7 482 - 0 482 77262 49 12 14 123 6 7 28 0 31 52 51 0 161 6 0 17 chain 14445 chr3 198022430 + 68476854 68477035 THE1B 368 + 7 188 143064 106 0 1 55 1 0 19 chain 44094 chr3 198022430 + 68480891 68481384 LTR2C 499 - 0 493 64097 493 chain 45202 chr3 198022430 + 68489534 68490121 HERVL-int 5654 - 186 794 62822 60 5 6 49 0 4 105 20 21 123 0 14 131 0 1 94 chain 86239 chr3 198022430 + 68490126 68491153 HERVL-int 5654 + 2827 3854 41065 1027 chain 6708 chr3 198022430 + 68491193 68491279 MSTC-int 1625 - 1525 1611 179629 86 chain 45377 chr3 198022430 + 68515908 68516583 MER11B 1079 - 0 1079 62622 13 1 2 13 1 0 89 4 5 69 3 2 6 0 1 22 0 320 13 0 1 15 24 12 22 18 17 45 1 0 49 0 5 212 0 91 55 chain 83256 chr3 198022430 + 68524317 68525243 L1PA4 6152 - 6 932 42229 926 chain 15081 chr3 198022430 + 68525243 68525410 L1PA4 6152 + 5063 5230 140593 167 chain 22065 chr3 198022430 + 68529916 68530287 THE1B 368 + 0 368 119941 100 22 23 53 43 39 91 1 0 4 1 2 56 chain 47359 chr3 198022430 + 68540317 68540848 L1PA3long 6157 + 5624 6156 60928 268 1 0 257 0 2 5 chain 2948 chr3 198022430 + 68549456 68549488 MER5C 305 - 68 100 226094 32 chain 36066 chr3 198022430 + 68555039 68555483 L1PA7 6471 - 3 443 74810 7 4 0 111 1 0 218 0 1 103 chain 508030 chr3 198022430 + 68630256 68636373 L1PA6 6164 - 2 6108 6318 6 4 0 723 0 1 12 15 4 18 14 6 83 0 1 158 0 1 107 0 1 5 1 0 304 1 0 66 0 6 11 1 0 216 1 0 4 0 1 1184 0 4 49 0 1 846 0 1 9 19 0 98 0 2 39 1 0 18 0 1 1352 0 17 240 1 0 511 chain 185197 chr3 198022430 + 68653105 68655916 L1PA10 4194 + 1233 4150 20480 290 0 3 86 1 0 200 0 159 240 3 0 11 0 3 139 0 3 34 4 202 26 0 1 43 0 2 32 0 2 204 2 0 86 10 8 5 0 2 127 17 1 36 0 1 56 0 1 55 4 8 8 0 3 134 0 2 104 292 35 49 0 1 18 20 24 56 0 2 367 18 14 34 chain 123246 chr3 198022430 + 68657193 68658770 THE1B-int 1605 - 11 1605 29961 6 5 0 147 6 0 8 1 7 293 0 1 479 0 1 139 1 0 49 7 32 172 10 6 254 chain 29541 chr3 198022430 + 68662460 68662770 AluYa5 310 - 0 310 86461 310 chain 4955 chr3 198022430 + 68678501 68678585 L1PB3 3668 - 102 182 195643 37 3 1 24 2 1 6 1 0 11 chain 26708 chr3 198022430 + 68696407 68696771 THE1B 368 + 0 368 97293 169 1 0 32 11 16 89 1 0 4 0 1 57 chain 47526 chr3 198022430 + 68699174 68699715 L1PA3long 6157 - 1 528 60825 139 14 0 388 chain 23840 chr3 198022430 + 68699715 68699981 L1P1 4361 + 3855 4122 111250 79 0 1 187 chain 55911 chr3 198022430 + 68705741 68706394 PABL_A 660 + 0 660 55177 81 0 9 300 2 0 270 chain 3216 chr3 198022430 + 68708202 68708237 tRNA-Gln-CAA_ 72 - 21 56 220649 35 chain 6264 chr3 198022430 + 68729739 68729819 MLT1A 405 - 19 101 183056 41 0 2 39 chain 340928 chr3 198022430 + 68731711 68736061 L1PA7 6471 - 6 6471 11875 6 2 0 322 0 1 429 1 0 4 3 1 15 4 12 45 4 6 245 0 2 25 24 25 171 0 3 73 1 0 475 1 2119 137 0 1 855 3 0 139 25 5 5 0 2 172 0 1 520 5 4 304 0 9 200 3 0 132 chain 7531 chr3 198022430 + 68753878 68753976 L1PA11 4918 + 4394 4488 173966 13 2 0 68 2 0 13 chain 331985 chr3 198022430 + 68769121 68773691 L1PA11 4918 - 287 4893 12130 20 60 44 13 1 0 15 31 22 9 4 0 20 1 0 13 2 0 68 2 0 82 3 12 54 0 1 40 1 4 21 0 1 458 1 4 12 0 40 175 0 1 152 1 0 270 7 8 39 6 7 246 3 4 230 1 0 287 0 8 421 2 0 15 3 0 178 2 0 7 0 2 11 18 24 160 2 1 144 0 2 45 4 6 292 0 4 449 1 2 269 26 23 10 20 19 39 2 0 11 0 2 36 3 4 33 2 0 17 chain 100771 chr3 198022430 + 68778504 68779699 L1PA5 6144 - 12 1202 36565 9 0 2 127 13 13 782 5 1 100 0 1 117 4 0 38 chain 22435 chr3 198022430 + 68807433 68807795 THE1B 368 + 0 356 118322 169 1 0 21 5 10 13 3 6 11 1 0 12 1 0 64 37 26 24 chain 2942 chr3 198022430 + 68826536 68826569 MER3 215 - 5 38 226276 33 chain 23702 chr3 198022430 + 68827608 68827973 THE1B 368 + 0 368 112022 44 11 26 102 10 9 13 10 0 93 11 10 71 chain 16141 chr3 198022430 + 68829531 68829788 THE1B 368 + 0 265 137932 17 5 6 21 12 27 123 8 0 71 chain 6077 chr3 198022430 + 68829824 68829892 THE1B 368 + 300 368 184598 68 chain 119839 chr3 198022430 + 68833426 68834991 LTR12C 1709 - 0 1709 31108 163 17 0 318 0 4 12 1 0 95 8 5 189 0 163 59 41 0 50 0 2 123 0 1 13 6 4 40 9 7 40 2 0 40 0 43 37 0 9 249 12 2 41 chain 2061 chr3 198022430 + 68834304 68834327 LTR12C 1709 - 942 965 238092 23 chain 150909 chr3 198022430 + 68853422 68855116 L1PA4 6152 + 4461 6151 24489 255 3 0 944 1 0 491 chain 2693 chr3 198022430 + 68859341 68859369 L1PA4 6152 - 6113 6141 221440 28 chain 530922 chr3 198022430 + 68859369 68865472 L1PA4 6152 + 32 6152 4088 495 18 18 466 1 0 229 1 0 1788 0 1 105 0 3 79 0 3 46 0 2 31 2 3 1053 0 4 749 0 1 552 1 0 481 0 5 6 chain 473048 chr3 198022430 + 68876041 68882471 L1PA7 6471 - 4 6464 7944 850 0 3 47 0 1 290 0 2 26 12 16 36 1 0 821 6 7 26 330 18 213 0 1 248 15 16 1211 1 2 159 0 1 145 5 6 155 0 4 236 0 1 169 0 4 251 0 1 233 1 0 200 1 22 11 1 2 164 1 76 57 5 15 30 38 38 95 3 30 11 18 188 66 0 1 51 26 28 77 0 11 88 chain 26707 chr3 198022430 + 68878175 68878476 L1PA7 6471 + 4935 5235 97295 261 1 0 39 chain 26868 chr3 198022430 + 68890215 68890502 AluYa5 310 + 23 310 96750 287 chain 505950 chr3 198022430 + 68890711 68896860 L1PA7 6471 - 2 6218 6470 40 4 14 74 0 1 716 0 3 457 0 9 260 0 1 72 0 4 146 0 4 68 0 5 70 0 4 158 0 1 831 3 2 154 0 1 468 0 2 6 5 9 5 0 1 74 0 1 100 5 7 120 15 6 411 0 4 233 0 1 383 1 0 194 1 0 109 0 2 184 0 3 561 0 14 64 1 2 48 0 1 108 chain 33436 chr3 198022430 + 68919733 68920160 L1PA8 5853 - 0 422 78508 9 1 0 80 8 7 16 2 1 47 0 2 12 1 0 71 2 0 46 1 0 131 chain 11784 chr3 198022430 + 68987562 68987750 MER30 238 - 0 202 153118 17 0 2 23 3 0 54 25 41 61 1 0 4 chain 3679 chr3 198022430 + 68987820 68987920 L1MB3 1562 + 1444 1546 212251 22 31 37 5 3 0 15 1 0 23 chain 95611 chr3 198022430 + 69015176 69016279 L1PA6 6164 + 5062 6162 37932 1092 3 0 8 chain 28720 chr3 198022430 + 69040895 69041249 THE1A 353 - 0 353 90244 40 1 0 203 1 0 83 0 1 26 chain 127278 chr3 198022430 + 69041267 69042827 THE1A-int 1579 - 19 1579 28747 56 1 0 673 0 1 208 11 10 306 1 2 304 chain 27648 chr3 198022430 + 69042827 69043179 THE1A 353 - 0 353 94216 118 1 2 123 1 0 83 0 1 26 chain 4590 chr3 198022430 + 69051417 69051491 MLT1F2 592 + 497 570 199754 14 2 0 23 1 2 34 chain 12780 chr3 198022430 + 69052465 69052743 THE1B 368 + 0 315 149137 57 0 13 38 101 126 6 1 0 75 chain 42749 chr3 198022430 + 69063915 69064476 MER41A 554 + 0 554 65721 4 1 0 337 0 3 91 22 0 32 1 14 73 chain 59745 chr3 198022430 + 69179216 69179882 L1PA3long 6157 - 0 666 52967 666 chain 27635 chr3 198022430 + 69237646 69237935 AluYb8 318 + 20 309 94251 289 chain 24770 chr3 198022430 + 69276543 69276841 AluSq10 312 + 11 311 106060 8 0 1 80 0 1 210 chain 14024 chr3 198022430 + 69276871 69277139 L1MC2 1988 + 1701 1988 144486 94 1 0 27 18 50 45 55 43 28 chain 7589 chr3 198022430 + 69288107 69288202 MER53 195 - 100 195 173611 95 chain 25443 chr3 198022430 + 69296804 69297099 AluYk4 311 - 17 311 102487 168 1 0 126 chain 3710 chr3 198022430 + 69310027 69310077 LTR12C 1709 + 807 975 211798 30 0 118 20 chain 124922 chr3 198022430 + 69386179 69387611 L1PA4 6152 + 4712 6145 29419 1280 1 2 151 chain 6127 chr3 198022430 + 69391887 69392038 L1MA5A 2387 - 11 150 184214 14 9 7 15 1 0 9 0 6 8 32 18 4 1 0 58 chain 536262 chr3 198022430 + 69394011 69400144 L1PA5 6144 + 3 6142 3413 642 0 1 135 6 9 557 0 1 2102 2 1 615 0 11 83 0 1 1009 0 1 811 7 0 153 4 0 7 chain 31930 chr3 198022430 + 69405327 69405733 MLT2A1 477 + 0 399 80969 166 9 6 213 4 0 14 chain 3379 chr3 198022430 + 69415611 69415650 U1 164 - 124 164 217505 4 0 1 35 chain 2947 chr3 198022430 + 69417342 69417373 MIRb 242 - 109 140 226157 31 chain 23770 chr3 198022430 + 69440400 69440685 L1PA5 6144 - 0 284 111651 18 1 0 266 chain 52795 chr3 198022430 + 69443650 69444333 L1PA8 5853 + 5176 5853 57134 244 0 1 118 4 5 20 1 0 45 4 1 74 1 0 52 6 5 19 1 0 46 1 0 47 chain 89854 chr3 198022430 + 69465698 69466799 L1PA8 5853 - 0 1100 39701 93 1 0 19 2 1 49 1 0 12 1 0 69 2 0 45 2 1 470 1 0 85 0 2 19 0 4 220 0 1 10 chain 10247 chr3 198022430 + 69504164 69504557 LTR12C 1709 + 650 1533 159386 65 0 444 48 24 0 8 213 283 35 chain 82586 chr3 198022430 + 69514555 69515551 L1PA6 6164 - 5 1007 42507 30 0 6 270 1 0 275 1 0 90 7 9 322 chain 11333 chr3 198022430 + 69521722 69521914 MER61E 571 - 0 182 154950 37 38 29 110 1 0 6 chain 539311 chr3 198022430 + 69524539 69530505 L1PA3long 6157 - 180 6150 2926 381 0 1 211 1 0 70 0 4 1311 0 1 1679 1 0 2312 chain 7314 chr3 198022430 + 69535392 69535597 L1PB1 5432 - 8 194 175339 4 1 0 15 1 0 14 1 0 14 5 7 13 35 30 19 24 12 16 1 0 42 chain 186160 chr3 198022430 + 69550718 69552817 L1PA5 6144 + 4018 6115 20402 1152 3 1 944 chain 16428 chr3 198022430 + 69568835 69569161 L1PB1 5432 - 29 329 137124 12 1 0 16 0 1 4 1 0 24 2 0 15 7 4 19 15 6 19 4 3 42 2 1 16 2 1 52 17 11 11 1 0 12 2 1 30 chain 3083 chr3 198022430 + 69597757 69597809 MER102c 337 - 170 226 223293 13 5 9 34 chain 288521 chr3 198022430 + 69623524 69626754 L1PA5 6144 - 16 3252 14122 659 0 2 1119 0 4 1082 0 1 103 1 0 266 chain 14234 chr3 198022430 + 69626754 69626926 L1P1 4361 - 4185 4357 142938 172 chain 115927 chr3 198022430 + 69658356 69659929 THE1B-int 1605 + 0 1598 32484 113 0 3 150 0 5 55 0 1 105 0 25 122 0 1 81 67 51 50 24 30 806 chain 16247 chr3 198022430 + 69663415 69663638 MER30 238 + 0 232 137625 107 8 20 67 4 1 37 chain 10593 chr3 198022430 + 69664278 69664396 L1PA2 6032 + 5912 6030 157855 118 chain 30427 chr3 198022430 + 69677333 69677651 AluYb8 318 + 0 318 83591 318 chain 509266 chr3 198022430 + 69680529 69686635 L1PA6 6164 - 8 6164 6222 9 1 0 886 0 1 138 0 1 633 0 2 522 5 6 86 5 11 119 0 1 217 7 8 216 18 23 367 0 1 420 8 24 139 1 2 699 0 1 649 0 1 160 1 18 369 11 10 6 0 1 243 14 10 157 chain 12499 chr3 198022430 + 69694300 69694557 L1PB3 3668 + 3391 3620 150245 87 19 4 18 5 3 25 3 1 37 7 3 13 2 1 12 7 4 15 1 0 6 chain 2744 chr3 198022430 + 69710223 69710272 LTR12C 1709 + 931 981 229559 27 8 9 14 chain 3344 chr3 198022430 + 69710288 69710328 LTR12C 1709 + 837 877 218157 40 chain 142076 chr3 198022430 + 69726424 69728080 LTR12C 1709 + 3 1709 25809 540 0 8 259 0 40 262 1 0 4 4 2 106 0 4 42 0 1 438 chain 28551 chr3 198022430 + 69740666 69740980 AluYa5 310 - 4 310 90954 174 8 0 132 chain 24135 chr3 198022430 + 69800915 69801359 MSTA 426 + 0 426 109552 22 8 9 66 6 7 101 42 41 83 47 22 57 0 6 12 chain 43411 chr3 198022430 + 69801359 69801894 MSTA-int 1630 + 0 536 64919 457 0 1 78 chain 76702 chr3 198022430 + 69805286 69806229 L1PA8 5853 - 6 943 45121 87 1 0 19 2 1 46 1 0 15 1 0 71 2 0 46 1 0 40 2 1 291 0 1 222 0 1 96 chain 24123 chr3 198022430 + 69837289 69837559 L1PA4 6152 - 0 272 109627 6 0 2 264 chain 26383 chr3 198022430 + 69845641 69845923 AluYb9 318 - 3 285 98481 282 chain 39145 chr3 198022430 + 69892911 69893381 L1PA7 6471 - 16 486 70545 470 chain 29328 chr3 198022430 + 69898105 69898414 AluYa5 310 - 1 310 87399 309 chain 26834 chr3 198022430 + 69909475 69909773 AluYd8 298 + 0 294 96858 97 2 0 23 2 0 174 chain 2954 chr3 198022430 + 69954735 69955436 L1ME1 1623 - 397 1085 226003 17 1 0 13 566 0 12 1 555 23 1 0 4 42 43 21 chain 23942 chr3 198022430 + 69958197 69958542 THE1A 353 + 9 351 110669 73 8 7 20 2 1 30 4 0 69 11 14 128 chain 124262 chr3 198022430 + 69958544 69960119 THE1A-int 1579 + 0 1579 29604 301 1 2 30 1 0 68 1 0 261 22 19 598 10 5 165 4 17 113 chain 28717 chr3 198022430 + 69960119 69960463 THE1A 353 + 0 342 90261 108 2 0 234 chain 90238 chr3 198022430 + 69969029 69970037 LTR13 1007 + 0 1007 39564 365 1 0 642 chain 21649 chr3 198022430 + 69976407 69976686 L1PA8 5853 + 5580 5853 121574 28 2 0 73 1 0 8 1 0 51 2 1 19 1 0 93 chain 7194 chr3 198022430 + 70008120 70008315 L1PB1 5432 + 5268 5430 176114 12 1 0 16 3 0 17 57 33 23 1 0 24 1 0 10 2 1 14 1 0 8 1 0 4 chain 27369 chr3 198022430 + 70025751 70026103 MLT2A1 477 + 0 351 95052 142 0 1 27 4 1 8 0 1 171 chain 457253 chr3 198022430 + 70026234 70031818 HERVL-int 5654 + 0 5608 8504 145 3 0 1017 7 17 782 0 9 51 1 2 65 18 0 161 1 2 4 1 0 21 4 5 902 0 1 862 0 7 17 0 1 459 0 6 16 0 9 531 0 1 132 2 1 382 chain 29151 chr3 198022430 + 70031868 70032241 MLT2A1 477 + 4 376 88310 138 1 2 24 5 2 11 0 1 194 chain 27177 chr3 198022430 + 70038135 70038423 AluYd8 298 - 10 298 95675 288 chain 2855 chr3 198022430 + 70054396 70054430 MLT1H2 457 - 22 56 227795 34 chain 335907 chr3 198022430 + 70055821 70059633 L1PA4 6152 - 11 3846 12002 102 6 17 696 0 4 144 3 1 312 0 1 513 0 8 926 1 0 74 0 3 163 1 0 871 chain 368400 chr3 198022430 + 70064725 70068938 L1PA5 6144 - 8 4208 11145 138 4 5 656 43 21 971 0 4 840 0 1 164 0 3 163 1 0 1187 0 1 46 chain 13455 chr3 198022430 + 70071425 70071576 L1PA4 6152 + 5992 6143 146501 151 chain 2806 chr3 198022430 + 70072940 70073005 MER58A 224 - 149 215 228665 31 22 23 12 chain 3036 chr3 198022430 + 70086861 70086897 MER117 194 - 51 87 224282 36 chain 8647 chr3 198022430 + 70090825 70090939 MER2 342 + 131 245 167491 114 chain 48955 chr3 198022430 + 70191081 70191826 L1PB1 5432 + 4714 5420 59780 187 19 20 182 1 2 11 9 0 22 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 6 20 10 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 27889 chr3 198022430 + 70193738 70194103 THE1B 368 + 0 368 93398 15 2 0 25 0 5 114 2 1 4 1 0 82 0 1 23 0 1 97 chain 16091 chr3 198022430 + 70208339 70208526 L1PA4 6152 - 12 199 138084 187 chain 28882 chr3 198022430 + 70236578 70236886 AluYg6 310 - 2 310 89532 308 chain 2906 chr3 198022430 + 70276761 70276804 MADE1 96 - 24 96 226943 13 1 30 29 chain 4393 chr3 198022430 + 70300819 70300870 MADE1 96 + 45 96 202030 51 chain 27680 chr3 198022430 + 70319831 70320193 L1PA7 6471 + 6104 6468 94115 32 0 1 85 11 12 234 chain 538712 chr3 198022430 + 70334215 70340234 L1PA3long 6157 - 5 6156 3040 1772 0 2 3474 8 136 512 5 6 97 0 1 151 chain 21078 chr3 198022430 + 70377059 70377415 THE1B 368 - 0 368 123629 31 8 9 73 47 57 29 1 0 72 15 17 80 chain 171752 chr3 198022430 + 70387558 70389555 L1PA5 6144 + 4137 6140 21849 107 0 1 777 1 0 841 12 24 235 0 1 8 7 0 9 chain 13361 chr3 198022430 + 70406684 70406848 L1PA8A 6298 + 6127 6291 146844 164 chain 30296 chr3 198022430 + 70415122 70415440 AluYb8 318 - 0 318 83932 318 chain 46541 chr3 198022430 + 70429694 70430234 L1PA5 6144 - 0 538 61562 113 1 0 42 1 0 383 chain 117060 chr3 198022430 + 70456390 70457974 THE1A-int 1579 - 0 1579 32107 217 0 1 44 5 6 16 14 12 131 21 12 5 0 3 128 24 19 328 0 1 4 1 0 4 1 12 8 8 0 54 0 1 289 0 2 282 chain 27793 chr3 198022430 + 70476608 70476907 AluYg6 310 + 0 299 93722 299 chain 5144 chr3 198022430 + 70479443 70479525 L1P3 4156 - 17 96 193609 24 3 2 6 2 0 47 chain 306418 chr3 198022430 + 70485493 70489153 HERVH-int 3825 - 0 3825 13157 934 0 1 890 0 4 697 1 0 216 1 2 302 0 1 13 0 2 5 2 0 5 25 62 15 20 89 7 1 0 10 1 0 38 5 0 12 1 62 60 5 6 59 1 0 24 1 0 309 chain 24006 chr3 198022430 + 70489160 70489570 LTR7 482 - 5 482 110293 169 4 1 15 0 31 33 5 6 37 51 0 33 12 101 51 chain 478349 chr3 198022430 + 70494174 70499538 L1PA3long 6157 - 11 5500 7786 1157 1 0 431 1 0 1387 1 0 2267 8 136 111 chain 336615 chr3 198022430 + 70500758 70504652 L1PA5 6144 - 0 3898 11979 11 3 1 128 0 1 106 0 1 609 0 1 679 7 9 693 5 4 1198 1 3 454 chain 21195 chr3 198022430 + 70509588 70509944 THE1A 353 + 0 353 123229 13 2 0 34 7 8 26 54 53 121 2 1 97 chain 5703 chr3 198022430 + 70511547 70511619 THE1A 353 + 7 80 188085 40 0 1 32 chain 12480 chr3 198022430 + 70511736 70511889 THE1A 353 + 200 353 150340 153 chain 16198 chr3 198022430 + 70530250 70530644 MSTA 426 - 21 426 137759 87 11 19 26 74 69 9 0 2 34 67 73 86 chain 8578 chr3 198022430 + 70587112 70587218 LTR28 1034 + 54 162 167858 56 0 2 50 chain 212494 chr3 198022430 + 70587872 70591060 MER52-int 3354 - 71 3245 18327 6 1 0 32 1 0 14 1 0 9 1 0 6 1 0 26 23 17 11 1 0 42 20 24 16 8 7 5 2 0 11 13 9 31 1 0 33 2 0 38 7 8 9 3 1 33 1 0 15 2 0 41 1 0 6 1 0 53 1 0 360 1 0 67 2 0 295 5 0 44 0 8 147 1 0 17 0 17 102 26 27 351 6 50 18 3 0 224 1 0 23 0 1 4 2 1 29 14 12 157 1 0 11 4 3 11 3 1 196 9 8 50 2 0 7 1 0 16 2 0 9 4 0 12 3 2 65 1 0 22 4 1 23 22 21 10 1 0 22 1 0 20 2 1 17 1 0 10 15 11 13 5 0 5 0 3 12 2 0 17 1 0 12 6 5 33 1 0 52 11 2 14 chain 3616 chr3 198022430 + 70593468 70593512 MIR 256 - 106 150 213401 44 chain 29343 chr3 198022430 + 70601460 70601814 THE1B-int 1605 - 35 389 87331 354 chain 21160 chr3 198022430 + 70619036 70619396 THE1B 368 - 0 368 123342 75 15 14 63 51 48 15 0 9 27 4 6 63 0 1 47 chain 5463 chr3 198022430 + 70661452 70661515 LTR12C 1709 + 949 1012 166402 63 chain 22488 chr3 198022430 + 70661515 70661799 LTR12C 1709 + 693 976 118074 144 1 0 139 chain 58327 chr3 198022430 + 70666270 70667017 LTR17 781 + 0 781 53791 119 0 9 79 4 5 42 9 10 63 1 0 67 4 5 316 0 22 19 0 1 24 chain 40945 chr3 198022430 + 70694144 70694654 L1PA7 6471 - 5 524 67979 154 18 28 310 1 0 27 chain 230631 chr3 198022430 + 70709336 70711978 L1PA5 6144 + 3486 6138 17276 15 0 1 180 1 0 182 0 1 462 11 18 949 7 8 733 0 1 102 chain 2900 chr3 198022430 + 70717270 70717479 L1ME1 1623 + 719 922 227042 4 1 0 20 7 0 6 84 88 23 46 44 18 chain 42405 chr3 198022430 + 70718674 70719207 MLT2A2 560 - 0 560 66142 85 1 3 122 4 28 118 0 1 203 chain 527433 chr3 198022430 + 70724819 70730945 L1PA5 6144 - 2 6144 4453 7 4 0 132 1 0 6 0 1 4 1 2 1182 5 0 501 0 1 437 0 1 25 0 1 578 1 0 184 0 1 1742 0 1 857 0 1 34 10 28 314 0 1 101 chain 195928 chr3 198022430 + 70735866 70738096 L1PA5 6144 - 2 2263 19504 7 4 0 469 0 32 1002 0 1 182 0 1 516 0 1 50 chain 27713 chr3 198022430 + 70738102 70738436 L1P1 4361 + 3414 3748 93994 334 chain 8376 chr3 198022430 + 70739660 70739864 L1PB1 5432 - 12 196 168988 16 1 0 13 1 0 21 1 0 24 2 0 11 73 58 41 chain 77001 chr3 198022430 + 70739923 70740831 L1PA7 6471 - 24 930 44966 564 1 0 262 1 0 80 chain 29703 chr3 198022430 + 70740831 70741190 L1PA7 6471 + 5144 5503 85815 359 chain 28682 chr3 198022430 + 70773615 70774154 L1MA1 4479 - 289 799 90397 18 46 33 32 2 0 29 5 4 122 3 0 5 1 0 88 1 0 19 24 21 62 10 9 9 1 0 4 2 0 21 6 4 4 0 1 25 chain 6505 chr3 198022430 + 70790511 70790622 MER20 218 - 1 109 181197 29 0 1 10 22 18 50 chain 21718 chr3 198022430 + 70802458 70802730 AluY 311 + 36 308 121320 69 2 1 26 0 1 175 chain 61233 chr3 198022430 + 70818258 70819206 L1PA15 4387 - 21 940 52241 10 1 0 27 7 3 11 3 1 41 9 6 49 3 2 8 4 0 23 1 0 55 1 0 26 9 8 4 0 1 45 3 4 6 1 0 11 20 12 81 1 0 40 3 1 27 0 4 31 4 0 16 2 0 257 0 1 108 chain 65161 chr3 198022430 + 70831943 70832654 L1PA3long 6157 + 5438 6149 50492 711 chain 491448 chr3 198022430 + 70840540 70846165 L1PA5 6144 - 0 6141 7299 11 2 1 837 0 4 808 0 2 1327 20 0 66 3 1 1154 0 4 986 0 4 319 7 532 85 chain 5584 chr3 198022430 + 70857513 70857582 U6 107 + 14 86 189231 30 0 3 39 chain 242090 chr3 198022430 + 70895399 70898332 L1PA8 5853 - 0 2948 16666 92 2 1 19 2 1 52 7 22 58 2 0 24 6 8 14 1 0 552 2 0 1620 0 3 33 0 1 175 0 1 272 chain 36827 chr3 198022430 + 70908678 70909141 LTR2 463 + 0 463 73769 299 13 12 51 12 13 88 chain 6549 chr3 198022430 + 70909141 70909240 MER2 342 + 183 273 180853 75 9 0 15 chain 4849 chr3 198022430 + 70927855 70927923 MADE1 96 + 11 96 196792 13 4 21 51 chain 11004 chr3 198022430 + 70937630 70937773 LTR32 486 - 0 153 156193 47 0 9 48 0 1 48 chain 529707 chr3 198022430 + 70941658 70948108 L1PA4 6152 - 18 6151 4220 16 0 6 109 0 3 1532 336 5 372 6 10 571 0 1 560 0 1 1381 3 0 823 0 1 94 0 1 407 1 0 4 0 1 235 chain 19171 chr3 198022430 + 70943401 70943651 LTR10F 562 - 0 251 129613 91 8 6 85 2 5 64 chain 5324 chr3 198022430 + 70970963 70971026 MER58A 224 + 55 118 191784 63 chain 149875 chr3 198022430 + 71062547 71064301 L1PA5 6144 + 4379 6144 24627 639 1 0 15 3 0 217 0 9 12 1 6 17 1 0 420 4 5 287 1 0 34 0 4 88 3 1 11 chain 20679 chr3 198022430 + 71131547 71131786 L1PA7 6471 + 6230 6470 125037 91 0 1 148 chain 11882 chr3 198022430 + 71326425 71326606 L1MA5A 2387 - 200 378 152691 32 2 0 38 0 2 7 1 0 45 4 3 27 1 0 24 chain 43338 chr3 198022430 + 71373423 71373921 L1PA5 6144 + 5640 6138 64995 498 chain 112372 chr3 198022430 + 71380102 71381632 LTR12C 1709 + 0 1709 33569 240 8 9 11 0 1 16 23 24 37 0 43 83 0 3 6 13 1 180 0 119 64 1 0 234 0 47 88 24 0 18 11 4 31 0 1 6 3 1 148 0 10 202 1 0 82 chain 15148 chr3 198022430 + 71385427 71385637 L1PA8 5853 - 0 210 140919 43 0 4 45 3 2 15 1 0 56 1 0 9 2 1 35 chain 12034 chr3 198022430 + 71489152 71489351 L1MB3 1562 + 1299 1521 152055 52 1 0 48 1 5 17 1 0 4 9 18 36 1 13 29 chain 16390 chr3 198022430 + 71514956 71515204 MER1B 344 + 93 339 137235 122 5 1 45 23 25 53 chain 25000 chr3 198022430 + 71550439 71550742 AluSc5 308 - 4 308 104787 261 0 1 42 chain 3512 chr3 198022430 + 71567904 71567945 MLT1J1 437 + 396 437 215195 41 chain 25129 chr3 198022430 + 71605460 71605752 AluSc8 310 + 14 309 104136 112 0 3 180 chain 3319 chr3 198022430 + 71642723 71642767 MER20 218 - 7 51 218607 44 chain 27946 chr3 198022430 + 71651873 71652177 AluYb8 318 + 0 300 93184 126 4 0 174 chain 5803 chr3 198022430 + 71655230 71655339 L1ME1 1623 + 520 638 187114 27 10 18 40 7 8 25 chain 296129 chr3 198022430 + 71714737 71718553 L1PA7 6471 + 2940 6460 13638 160 0 4 284 0 4 213 0 1 130 0 1 277 309 0 240 0 2 231 0 1 73 6 4 9 1 0 4 5 6 867 0 8 88 2 3 589 1 0 133 6 1 55 1 0 132 chain 2747 chr3 198022430 + 71848457 71848486 MLT1K 546 - 33 62 229529 29 chain 5999 chr3 198022430 + 71851053 71851149 L1MA8 2339 - 130 217 185247 13 6 0 33 3 0 41 chain 5465 chr3 198022430 + 71852100 71852166 MLT2B2 565 + 4 70 190366 66 chain 9271 chr3 198022430 + 71875558 71875671 L1PA8 5853 + 5741 5853 164209 19 1 0 93 chain 43291 chr3 198022430 + 71885671 71886217 MER41A 554 + 0 547 65065 127 8 9 411 chain 42185 chr3 198022430 + 71887390 71888023 MER4A1_ 611 + 0 611 66415 122 40 20 239 0 1 4 28 29 12 8 0 81 0 3 86 0 2 6 1 0 6 chain 2333 chr3 198022430 + 71893388 71893436 U5 65 + 0 48 234942 22 2 0 5 3 5 16 chain 29356 chr3 198022430 + 71901518 71901827 AluYa5 310 - 1 310 87259 309 chain 43946 chr3 198022430 + 71926190 71926734 MER41A 554 - 6 554 64269 73 0 5 172 1 0 298 chain 36879 chr3 198022430 + 71974623 71975122 LTR7 482 + 0 482 73686 173 51 0 51 0 1 33 0 32 129 13 14 49 chain 59273 chr3 198022430 + 71978052 71978708 SVA_D 2077 + 1418 2077 53240 637 0 3 19 chain 9653 chr3 198022430 + 72008294 72008431 L1PA8 5853 + 5691 5853 162334 49 2 1 18 0 26 68 chain 33688 chr3 198022430 + 72029009 72029750 MLT2A1 477 - 52 477 78112 40 4 0 169 310 0 16 0 1 28 3 0 171 chain 212428 chr3 198022430 + 72029750 72032325 HERVL-int 5654 - 0 2630 18333 104 9 24 21 1 23 30 0 2 16 1 0 4 0 1 524 0 3 7 11 8 381 5 6 40 1 0 84 3 4 41 9 8 170 0 13 202 0 6 83 2 0 11 1 0 814 chain 4629 chr3 198022430 + 72055207 72055264 MLT1C 463 + 17 74 199311 57 chain 49984 chr3 198022430 + 72055264 72055917 PABL_A 660 + 0 653 59027 62 5 0 6 4 9 50 1 0 149 6 7 370 chain 3994 chr3 198022430 + 72056304 72056416 MER31A 484 + 0 96 207478 20 53 37 39 chain 32673 chr3 198022430 + 72056439 72056889 MER4A1 472 + 0 472 79726 14 0 2 50 1 0 119 1 0 4 0 1 33 0 36 23 7 0 54 7 1 54 13 11 70 chain 59295 chr3 198022430 + 72070507 72071273 MER4E1 777 + 0 770 53226 24 1 2 221 1 0 97 1 0 75 0 2 117 2 0 5 4 8 140 0 1 78 chain 29669 chr3 198022430 + 72072276 72072676 LTR7 482 + 0 475 85957 69 8 46 107 5 6 36 0 31 10 0 3 78 0 2 87 chain 318144 chr3 198022430 + 72072685 72076390 HERVH-int 3825 + 0 3825 12666 333 1 0 148 11 119 30 4 42 25 1 0 28 38 1 30 0 1 6 0 2 13 0 3 241 0 1 1169 0 1 899 0 3 591 0 2 137 chain 30203 chr3 198022430 + 72077645 72078051 LTR7 482 + 0 476 84185 69 8 46 109 8 9 28 1 32 183 chain 43256 chr3 198022430 + 72079320 72079824 MER9a1 513 - 0 513 65111 222 1 4 50 0 6 231 chain 12286 chr3 198022430 + 72083045 72083243 MER34C 514 - 319 512 151055 15 0 3 81 13 6 10 12 11 67 chain 3521 chr3 198022430 + 72084063 72084102 LTR33A_ 513 + 48 87 215052 39 chain 23361 chr3 198022430 + 72102256 72102601 THE1B 368 + 0 366 113864 40 0 15 35 6 7 71 1 0 4 3 2 49 11 18 125 chain 14496 chr3 198022430 + 72102772 72102960 Tigger3 1187 + 344 535 142899 95 1 2 76 0 2 16 chain 20881 chr3 198022430 + 72109576 72109918 THE1B 368 - 0 347 124355 39 24 23 38 3 0 28 14 26 13 5 6 26 1 0 64 3 0 84 chain 125201 chr3 198022430 + 72112110 72113666 THE1B-int 1605 - 5 1605 29322 162 14 15 711 18 34 81 0 1 140 1 26 245 0 1 184 chain 25719 chr3 198022430 + 72116188 72116542 THE1B 368 - 0 368 101223 75 1 0 93 0 2 23 1 0 7 1 0 103 6 21 44 chain 23480 chr3 198022430 + 72144216 72144507 L1PA8A 6298 + 5999 6291 113219 257 7 8 27 chain 29985 chr3 198022430 + 72210370 72210823 L1PA16 3655 - 36 468 84858 13 37 18 10 3 0 157 6 5 125 2 0 36 0 5 47 1 0 16 chain 4763 chr3 198022430 + 72221830 72221914 MER96B 391 + 253 337 197784 33 3 0 13 8 11 27 chain 33532 chr3 198022430 + 72232717 72233318 L1PA15 4387 + 3754 4357 78343 55 5 3 18 10 7 50 7 5 40 1 0 99 8 16 52 0 21 12 11 10 41 2 1 23 4 0 10 4 10 40 14 3 44 3 1 12 8 2 28 chain 32564 chr3 198022430 + 72244414 72244833 MLT2A1 477 - 14 477 79919 42 0 38 38 0 1 79 0 1 4 1 0 16 0 1 69 1 5 169 chain 20115 chr3 198022430 + 72262213 72262576 MSTA 426 - 0 426 126780 95 5 35 60 2 0 20 0 4 8 1 0 28 54 73 9 0 17 44 4 0 33 chain 5186 chr3 198022430 + 72262613 72262682 MER58A 224 + 37 166 193188 60 0 60 9 chain 4629 chr3 198022430 + 72294102 72294160 MIRc 230 - 101 161 199306 35 0 2 23 chain 6664 chr3 198022430 + 72311478 72311558 MADE1 96 + 0 96 179956 29 0 16 51 chain 19061 chr3 198022430 + 72316113 72316473 THE1B 368 - 0 368 129938 56 1 2 6 2 0 16 0 2 43 7 15 12 42 39 31 36 38 108 chain 6242 chr3 198022430 + 72323769 72323935 MER58A 224 - 23 185 183236 21 7 6 25 61 58 52 chain 25711 chr3 198022430 + 72325529 72325895 L1P2 5180 + 2 1113 101243 27 13 26 33 0 729 267 12 15 14 chain 26293 chr3 198022430 + 72379726 72380011 AluYa5 310 + 29 310 98854 97 4 0 184 chain 7429 chr3 198022430 + 72462099 72462240 MLT1A1 405 + 167 344 174589 16 2 4 23 9 41 30 16 18 45 chain 5487 chr3 198022430 + 72462419 72462485 Tigger7 736 + 56 122 190154 66 chain 5025 chr3 198022430 + 72521227 72521286 MLT1F2 592 - 0 59 194881 59 chain 22047 chr3 198022430 + 72529104 72529459 THE1D 372 + 2 372 120032 49 5 12 97 7 8 12 39 44 70 0 2 76 chain 11066 chr3 198022430 + 72534052 72534241 THE1B 368 - 21 214 155941 104 40 45 29 1 0 15 chain 4641 chr3 198022430 + 72535461 72535513 THE1C 375 - 27 79 199176 52 chain 4556 chr3 198022430 + 72547619 72547685 MLT1A1 405 - 152 217 200159 15 4 3 47 chain 4108 chr3 198022430 + 72561202 72561258 MLT1F1 559 + 237 294 205807 34 1 2 21 chain 23188 chr3 198022430 + 72597367 72597672 AluSp 311 + 11 310 114733 121 16 10 168 chain 3410 chr3 198022430 + 72608009 72608049 MSTA 426 + 385 425 216922 40 chain 2839 chr3 198022430 + 72615240 72615274 MLT1F1 559 - 0 34 228093 34 chain 13165 chr3 198022430 + 72615381 72615564 MER2 342 + 136 319 147596 20 2 0 9 0 1 128 4 5 20 chain 48298 chr3 198022430 + 72635911 72636707 LTR1 825 + 0 825 60244 68 9 15 67 101 53 21 29 92 116 1 2 98 1 0 5 1 0 240 3 12 36 chain 68803 chr3 198022430 + 72658058 72658837 L1PA5 6144 + 5365 6141 48893 166 0 1 603 4 0 6 chain 3986 chr3 198022430 + 72715716 72715764 MIR 256 + 65 113 207589 48 chain 15193 chr3 198022430 + 72754797 72754991 Tigger2a 444 + 0 195 140796 62 8 9 124 chain 540291 chr3 198022430 + 72759503 72765638 L1PA5 6144 - 9 6141 2775 833 0 1 134 0 1 21 1 2 795 0 4 1180 1 0 217 0 2 1132 1 2 323 0 1 784 15 4 81 4 2 613 chain 2916 chr3 198022430 + 72766923 72766959 MIR 256 + 110 150 226753 26 0 4 10 chain 26088 chr3 198022430 + 72778983 72779268 AluYf4 310 - 25 310 99679 285 chain 2913 chr3 198022430 + 72788839 72788893 LTR16B1 483 - 0 55 226824 11 10 11 33 chain 3603 chr3 198022430 + 72794947 72794987 5S 121 + 0 40 213591 40 chain 119265 chr3 198022430 + 72836851 72838245 SVA_B 1603 + 6 1603 31308 13 7 12 11 4 0 496 1 41 237 0 40 29 2 124 594 chain 10751 chr3 198022430 + 72838443 72838606 MER30B 195 + 16 191 157195 72 7 16 49 5 8 30 chain 23398 chr3 198022430 + 72862634 72862932 AluY 311 + 0 303 113658 50 2 0 5 10 14 57 0 3 174 chain 10899 chr3 198022430 + 72901791 72901921 L1PA2 6032 + 5906 6032 156592 113 2 0 8 2 0 5 chain 13385 chr3 198022430 + 72902195 72902379 L1PB4 2604 - 32 214 146765 21 1 0 24 1 0 137 chain 28525 chr3 198022430 + 72916421 72916772 THE1B 368 - 0 368 91076 176 2 0 23 1 0 100 0 20 49 chain 29835 chr3 198022430 + 72919545 72919861 AluYb8 318 - 2 318 85333 316 chain 17815 chr3 198022430 + 72924555 72924813 AluSc 308 + 39 300 133349 62 1 0 124 6 15 32 10 7 13 2 0 8 chain 46768 chr3 198022430 + 72929468 72930549 L1PB1 5432 + 4666 5422 61399 134 2 0 174 0 1 49 1 2 11 0 1 44 14 32 24 1 0 8 1 0 11 9 5 6 2 0 52 2 1 16 1 0 45 1 0 13 1 0 5 2 0 5 358 33 8 2 0 24 1 0 22 1 0 12 1 0 18 chain 5151 chr3 198022430 + 72933323 72933382 THE1A 353 + 218 277 193539 59 chain 5456 chr3 198022430 + 72991055 72991146 L1MC4a 1092 + 45 130 190461 46 8 3 9 1 0 27 chain 18380 chr3 198022430 + 72994229 72994467 AluY 311 + 82 311 131843 44 9 0 185 chain 2986 chr3 198022430 + 73000592 73000626 MIRb 242 - 8 42 225324 34 chain 4008 chr3 198022430 + 73043633 73043679 MER3 215 + 119 165 207254 46 chain 12404 chr3 198022430 + 73075773 73075967 MER30 238 + 30 232 150618 75 4 0 9 10 28 11 6 0 79 chain 11923 chr3 198022430 + 73107701 73107907 L1MA3 4352 - 27 233 152501 11 1 0 19 17 15 22 2 0 17 5 1 36 0 2 30 0 7 46 chain 10946 chr3 198022430 + 73137156 73137338 L1MA4 2864 - 183 365 156422 10 4 1 32 11 9 38 7 12 80 chain 5323 chr3 198022430 + 73141342 73141407 U6 107 - 41 106 191786 65 chain 12219 chr3 198022430 + 73160154 73160316 U2 167 + 8 164 151343 124 2 0 9 5 1 22 chain 35225 chr3 198022430 + 73160679 73161142 L1PA8 5853 - 18 472 75892 74 2 1 73 4 1 4 1 0 74 2 0 44 1 0 63 1 0 120 chain 22472 chr3 198022430 + 73195740 73196045 AluSc 308 - 13 308 118143 136 1 0 7 15 17 101 11 0 34 chain 28548 chr3 198022430 + 73201536 73201870 LTR12_ 688 - 0 336 90974 5 0 2 329 chain 52146 chr3 198022430 + 73201897 73202573 LTR12 884 - 24 884 57529 60 1 0 26 3 0 10 4 37 327 0 22 36 1 134 208 chain 322270 chr3 198022430 + 73204199 73208266 HERV9-int 5642 - 827 5642 12509 469 27 1 130 0 1 147 4 5 110 7 942 196 0 3 358 9 7 1339 3 0 15 160 0 301 6 5 20 0 1 40 1 0 111 5 0 9 5 4 27 0 1 10 0 4 245 0 1 313 chain 44506 chr3 198022430 + 73208294 73208888 LTR12 884 - 0 884 63573 50 1 134 296 0 1 26 2 0 10 3 2 12 10 169 184 chain 4906 chr3 198022430 + 73240815 73240913 MER97d 503 - 363 456 196223 50 10 9 24 1 0 5 3 0 5 chain 99040 chr3 198022430 + 73242952 73244116 L1PA6 6164 - 2 1167 37019 42 0 1 575 1 0 4 2 3 540 chain 23337 chr3 198022430 + 73261333 73261724 THE1C 375 - 0 375 113996 25 1 0 14 18 1 104 3 4 6 1 0 34 16 14 34 27 31 108 chain 3852 chr3 198022430 + 73271903 73271966 LTR50 688 + 37 100 209613 33 6 7 16 1 0 7 chain 53897 chr3 198022430 + 73289242 73290397 L1MA1 4479 - 1058 1874 56428 32 3 0 22 0 1 99 12 7 9 2 1 73 4 0 16 13 11 165 2 0 27 1 0 33 3 2 58 318 2 29 1 0 30 1 0 24 8 6 106 6 5 58 chain 6564 chr3 198022430 + 73290939 73291033 U6 107 - 0 93 180747 70 6 5 18 chain 118042 chr3 198022430 + 73313435 73315438 L1PREC2 3366 + 1349 3249 31788 369 0 32 21 1 0 180 0 1 67 1 2 5 1 0 17 0 5 191 2 1 40 0 1 21 2 1 414 8 7 22 5 6 21 1 2 24 13 17 34 1 0 3 3 0 14 29 21 11 12 7 14 4 2 28 3 0 12 23 9 35 6 4 31 182 100 14 29 20 10 16 11 19 10 5 21 5 0 8 chain 108991 chr3 198022430 + 73318161 73319443 LTR12C 1709 + 0 1709 34445 525 0 1 266 9 325 107 0 4 213 0 101 27 0 1 71 0 4 64 chain 6864 chr3 198022430 + 73328894 73329049 MER58C 217 - 1 168 178471 14 6 0 41 49 67 45 chain 35465 chr3 198022430 + 73362657 73363140 L1PA13 3608 + 2957 3433 75603 168 13 12 22 1 0 114 2 0 62 1 0 29 0 1 26 1 0 5 2 0 37 chain 16341 chr3 198022430 + 73380468 73380797 L1PB1 5432 - 28 326 137363 13 1 0 18 4 3 24 2 0 15 1 0 4 2 0 30 13 1 16 1 0 44 18 16 52 2 0 9 2 0 3 2 0 10 1 0 7 2 1 24 1 0 8 chain 527579 chr3 198022430 + 73382001 73388141 L1PA5 6144 - 1 6144 4442 255 1 2 1800 13 8 245 2 3 325 0 3 249 2 0 939 2 1 502 1 0 587 0 1 54 37 28 475 5 4 75 0 2 436 0 14 135 chain 8503 chr3 198022430 + 73397362 73397556 L1PB1 5432 + 5255 5427 168272 26 1 0 15 2 0 6 16 6 19 7 4 11 7 5 23 2 1 20 1 0 13 1 0 19 1 0 4 chain 5712 chr3 198022430 + 73401099 73401257 MIR 256 + 29 220 187994 26 18 17 44 47 81 23 chain 548555 chr3 198022430 + 73417612 73423766 L1PA4 6152 - 1 6152 1635 459 0 1 396 0 1 500 0 1 438 0 4 524 2 0 945 2 0 725 0 1 1576 1 0 110 16 10 460 chain 36383 chr3 198022430 + 73429720 73430115 L1PA2 6032 - 1 396 74383 395 chain 21317 chr3 198022430 + 73436035 73436395 THE1B 368 + 0 368 122817 17 0 2 92 1 3 6 1 0 57 56 63 66 8 6 56 chain 5515 chr3 198022430 + 73513928 73514153 L1MA8 2339 - 12 211 189887 27 95 73 26 8 7 36 14 11 19 chain 7001 chr3 198022430 + 73517290 73517552 MLT1D 503 + 185 455 177454 14 79 77 78 71 81 20 chain 10475 chr3 198022430 + 73559867 73560039 MER44A 345 - 49 236 158370 32 6 11 8 1 0 61 0 13 42 6 4 16 chain 31551 chr3 198022430 + 73637138 73637529 L1PA8A 6298 - 7 401 81564 27 5 6 103 0 2 256 chain 3799 chr3 198022430 + 73679938 73679982 L1MB7 1623 + 1378 1422 210398 44 chain 31164 chr3 198022430 + 73695988 73696426 MLT2A1 477 + 0 477 82230 52 0 1 114 6 3 31 0 5 3 5 0 122 3 4 50 3 39 43 0 4 6 chain 8007 chr3 198022430 + 73746760 73746886 MER2 342 + 131 279 171006 4 0 1 42 4 12 39 1 14 36 chain 4459 chr3 198022430 + 73815018 73815071 L1P4 1494 + 254 307 201244 53 chain 21093 chr3 198022430 + 73818470 73818768 L1PA8 5853 - 0 294 123573 93 1 0 16 1 0 42 0 7 5 5 0 8 1 0 72 2 0 46 1 0 5 chain 27331 chr3 198022430 + 73825397 73825754 THE1D 372 - 0 372 95168 32 1 0 101 0 6 152 1 11 70 chain 44283 chr3 198022430 + 73829987 73830536 MER41A 554 + 0 554 63843 468 8 13 73 chain 25853 chr3 198022430 + 73834653 73834927 AluYb8 318 - 8 282 100642 274 chain 130569 chr3 198022430 + 73855966 73857536 THE1A-int 1579 + 0 1574 27951 502 3 0 179 0 1 567 0 3 68 0 2 247 0 1 4 chain 28967 chr3 198022430 + 73857541 73857895 THE1A 353 + 0 353 89147 110 1 0 243 chain 15050 chr3 198022430 + 73861970 73862130 L1PA3long 6157 - 4 164 141176 160 chain 152132 chr3 198022430 + 73891561 73893307 L1PA6 6164 - 2 1751 24321 8 3 0 328 1 0 424 1 0 80 0 8 901 chain 24688 chr3 198022430 + 73940609 73940952 MER1A 529 - 14 347 106508 46 23 13 274 chain 49099 chr3 198022430 + 73952534 73953187 L1PA8 5853 - 0 647 59669 92 2 1 19 2 1 50 1 0 11 7 6 65 2 0 44 1 0 48 0 1 252 27 27 30 chain 4185 chr3 198022430 + 73956150 73956195 L1PA3long 6157 + 6112 6157 204774 45 chain 6939 chr3 198022430 + 73957488 73957576 MADE1 96 - 0 94 177897 46 0 6 42 chain 33138 chr3 198022430 + 73969073 73969448 L1PA3long 6157 - 2 379 79005 92 0 2 283 chain 133455 chr3 198022430 + 73969448 73970910 L1PA3long 6157 + 4271 5733 27331 1462 chain 29663 chr3 198022430 + 73989716 73990026 AluYa5 310 - 0 310 86001 310 chain 21197 chr3 198022430 + 74034940 74035315 THE1B 368 - 0 368 123223 74 1 0 95 37 30 34 26 27 13 7 8 39 0 1 34 2 0 13 chain 539100 chr3 198022430 + 74039863 74045985 L1PA4 6152 + 3 6146 2968 584 6 7 650 1 0 780 0 1 295 3 0 739 0 1 232 0 1 1405 0 1 992 0 2 174 0 18 261 chain 5897 chr3 198022430 + 74086275 74086362 LTR48B 642 - 0 87 186214 13 1 2 4 1 0 68 chain 28692 chr3 198022430 + 74102271 74102574 AluYb8 318 - 0 303 90358 303 chain 4240 chr3 198022430 + 74117205 74117340 MER5A 189 + 0 133 204014 46 73 71 16 chain 23414 chr3 198022430 + 74170087 74170440 THE1B 368 - 12 368 113575 61 9 18 33 7 0 46 1 3 19 15 14 162 chain 23366 chr3 198022430 + 74175735 74176012 AluSp 311 - 23 300 113834 277 chain 37716 chr3 198022430 + 74179363 74179956 L1MA2 4263 + 2680 3295 72531 8 0 12 44 2 0 29 33 35 65 1 0 5 5 26 7 12 0 175 5 6 178 0 1 24 chain 115097 chr3 198022430 + 74180330 74181896 THE1B-int 1605 - 0 1605 32759 141 10 11 313 23 23 122 5 6 232 0 1 173 12 13 114 1 26 8 0 4 14 2 1 317 0 3 38 2 3 16 0 1 8 4 6 11 chain 19850 chr3 198022430 + 74203195 74203498 THE1B 368 - 61 368 127654 64 21 19 11 16 23 21 1 0 169 chain 539579 chr3 198022430 + 74206124 74212264 L1PA4 6152 - 9 6152 2886 139 1 4 1767 1 0 1022 0 1 463 0 1 800 1 0 1946 chain 5131 chr3 198022430 + 74224077 74224150 L1PB1 5432 - 19 88 193766 9 1 0 13 1 0 3 1 0 18 1 0 26 chain 1540 chr3 198022430 + 74243090 74243264 MER9a1 513 + 0 174 73733 174 chain 287793 chr3 198022430 + 74243282 74246492 L1PA4 6152 - 1 3213 14172 4 0 1 2096 1 2 1109 chain 34249 chr3 198022430 + 74246499 74246911 L1PA4 6152 - 5737 6149 77281 412 chain 3017 chr3 198022430 + 74246914 74247255 MER9a1 513 + 174 513 73733 320 7 5 14 chain 28819 chr3 198022430 + 74283130 74283498 THE1C 375 - 10 375 89805 15 1 0 230 3 0 11 1 2 107 chain 18591 chr3 198022430 + 74285076 74285339 THE1C 375 - 0 255 131256 6 1 0 19 1 0 39 7 1 190 chain 9905 chr3 198022430 + 74285347 74285462 THE1C 375 - 260 375 161045 115 chain 20354 chr3 198022430 + 74287501 74287760 L1PA5 6144 - 6 253 126050 142 8 0 25 5 0 26 0 1 53 chain 366416 chr3 198022430 + 74323539 74328927 L1PB1 5432 + 36 5419 11198 120 0 1 43 1 0 408 0 1 169 4 7 47 10 14 368 5 7 18 1 0 8 8 38 119 15 0 189 2 0 250 0 4 37 0 1 15 0 1 184 1 0 5 0 1 95 5 9 60 11 14 225 3 1 339 1 0 6 3 4 37 1 12 37 10 14 408 0 1 226 1 0 4 0 1 28 0 2 120 2 3 21 0 1 179 0 1 8 11 9 7 0 3 32 2 8 490 4 5 108 26 21 8 1 0 5 0 1 95 0 1 54 8 0 10 8 16 36 312 278 13 1 0 11 4 0 11 6 4 47 2 1 10 7 6 9 0 1 34 1 0 15 3 0 17 13 4 10 2 0 5 1 0 10 9 7 21 1 0 21 1 0 10 1 0 18 chain 55620 chr3 198022430 + 74340052 74340686 L1PA5 6144 - 0 633 55351 271 1 0 362 chain 166698 chr3 198022430 + 74366093 74368078 L1P1 4361 - 1824 3790 22432 230 1 0 1050 0 1 11 19 19 252 0 1 4 1 0 25 0 4 41 6 0 71 17 0 257 chain 150669 chr3 198022430 + 74368080 74369791 L1PA4 6152 + 4403 6151 24519 890 2 1 788 0 38 31 chain 7219 chr3 198022430 + 74370106 74370333 L1PA16 3655 + 3410 3619 175947 48 27 29 50 86 66 16 chain 5674 chr3 198022430 + 74379153 74379225 Tigger3b 1229 + 10 82 188357 72 chain 37902 chr3 198022430 + 74407768 74408179 L1PA2 6032 - 8 419 72283 411 chain 20641 chr3 198022430 + 74445644 74445917 AluY 311 + 29 304 125154 103 18 19 108 0 1 44 chain 13853 chr3 198022430 + 74481443 74481646 MER30 238 - 6 238 145057 110 4 15 61 13 31 15 chain 9818 chr3 198022430 + 74489817 74489954 L1PA8 5853 - 0 134 161503 93 1 0 18 4 3 11 1 0 9 chain 302363 chr3 198022430 + 74501467 74504937 L1P1 4361 - 20 3504 13304 12 2 1 23 1 0 155 1 0 938 0 1 438 0 5 929 0 4 134 0 1 262 0 4 253 0 3 206 4 3 112 chain 15313 chr3 198022430 + 74520305 74520503 L1PA7 6471 + 6269 6468 140448 38 3 4 157 chain 5434 chr3 198022430 + 74583942 74584022 MADE1 96 - 0 96 190667 37 5 21 38 chain 42028 chr3 198022430 + 74595473 74596023 MLT2A2 560 + 0 560 66588 180 1 0 219 3 14 147 chain 241571 chr3 198022430 + 74602092 74605037 L1PA7 6471 - 5 2979 16693 8 1 0 150 0 1 469 0 1 4 2 1 103 0 20 88 2 0 451 4 1 5 0 3 168 1 2 262 0 1 55 4 8 826 2 3 288 0 4 52 chain 4394 chr3 198022430 + 74605039 74605099 THE1D 372 + 302 361 202016 34 2 1 24 chain 52833 chr3 198022430 + 74609732 74610336 L1PA5 6144 + 5541 6143 57115 350 2 0 252 chain 20921 chr3 198022430 + 74614957 74615310 THE1B 368 + 0 368 124207 80 5 6 83 1 0 11 57 72 116 chain 48847 chr3 198022430 + 74636828 74637371 L1PA3long 6157 - 1883 2438 59658 329 0 1 109 0 11 105 chain 172405 chr3 198022430 + 74637371 74639269 L1PA3long 6157 + 4259 6157 21770 47 0 1 1701 1 0 149 chain 105452 chr3 198022430 + 74643448 74644635 L1PA3long 6157 - 0 1190 35384 5 0 2 272 3 0 561 4 8 342 chain 106007 chr3 198022430 + 74644636 74645813 L1PA3long 6157 + 3790 4971 35257 564 0 4 613 chain 42555 chr3 198022430 + 74696226 74696717 MER9a1 513 - 0 513 65955 246 1 23 244 chain 3303 chr3 198022430 + 74728719 74728851 L1MB3 1562 + 1399 1507 218912 14 60 34 21 1 0 16 5 8 15 chain 23782 chr3 198022430 + 74735915 74736218 L1PA7 6471 - 1 305 111581 104 10 11 189 chain 254089 chr3 198022430 + 74737188 74740097 L1PA5 6144 + 3234 6143 16027 21 0 1 419 2 0 1600 0 4 19 4 7 584 1 2 106 7 0 146 chain 116225 chr3 198022430 + 74751702 74752979 L1PA3long 6157 + 4875 6157 32366 903 0 6 231 1 0 142 chain 20697 chr3 198022430 + 74760741 74760993 THE1B 368 - 0 251 124978 200 1 0 51 chain 3717 chr3 198022430 + 74767648 74767692 L1MCa 1829 - 920 964 211668 44 chain 24220 chr3 198022430 + 74807384 74807685 L1PB1 5432 - 1473 1776 109092 226 2 4 73 chain 100798 chr3 198022430 + 74807688 74809141 L1PB1 5432 + 3960 5404 36562 179 2 0 485 3 0 52 0 3 5 0 1 64 1 2 5 1 0 47 0 1 93 0 1 81 1 0 4 0 2 117 0 4 6 1 2 20 1 0 13 17 12 8 2 0 53 2 1 15 1 0 41 12 11 8 1 0 6 16 6 19 22 30 13 1 0 21 1 0 13 chain 9689 chr3 198022430 + 74817275 74817398 MER58A 224 - 83 205 162156 118 1 0 4 chain 3678 chr3 198022430 + 74818890 74818949 MER57C2 434 - 273 337 212273 38 8 13 13 chain 18940 chr3 198022430 + 74825595 74825812 L1PA2 6032 + 5815 6032 130252 217 chain 504882 chr3 198022430 + 74843293 74849490 L1PA6 6164 + 0 6158 6548 371 1 44 381 17 0 164 0 1 512 99 1 336 1 0 30 10 11 153 0 1 111 0 3 209 1 2 866 0 1 43 0 4 62 1 0 15 0 15 610 6 7 850 0 3 208 0 1 969 0 3 16 14 6 6 0 8 135 chain 5873 chr3 198022430 + 74844739 74844806 L1PA6 6164 + 1474 1541 186439 67 chain 329542 chr3 198022430 + 74867793 74872286 L1PB1 5432 - 8 4452 12220 4 1 0 16 1 0 13 1 0 21 1 0 21 5 3 14 8 5 16 9 0 15 3 0 16 1 0 43 1 0 16 3 2 47 15 25 13 1 0 20 40 17 44 16 16 409 11 0 18 5 14 19 0 1 855 4 1 191 8 0 76 4 0 83 0 1 628 9 11 137 0 2 99 0 4 189 0 2 18 31 32 636 0 1 4 1 0 187 5 10 12 19 6 95 0 1 315 chain 36531 chr3 198022430 + 74874180 74874655 LTR2B 499 + 9 499 74199 5 1 0 60 3 0 37 3 22 175 0 1 8 1 0 182 chain 56423 chr3 198022430 + 74875755 74876513 Harlequin-int 5206 + 127 887 54896 5 0 3 8 5 0 15 2 0 10 0 2 118 0 1 17 0 1 51 0 5 12 0 2 22 3 2 84 3 0 137 3 0 142 0 2 121 chain 28099 chr3 198022430 + 74880046 74880467 LTR2B 499 + 0 499 92651 13 0 1 60 3 0 37 8 87 34 1 2 13 5 0 12 0 5 40 7 8 5 1 0 182 chain 13480 chr3 198022430 + 74880467 74880693 L1PBa1 4058 - 3726 3952 146416 138 15 0 7 11 27 15 0 3 6 4 0 30 chain 25840 chr3 198022430 + 74921983 74922308 LTR17 781 - 455 781 100700 211 12 13 102 chain 354514 chr3 198022430 + 74922622 74926702 HERV17-int 4347 - 0 4068 11489 236 0 1 968 0 1 776 0 1 889 3 0 50 0 1 369 0 1 639 14 0 136 chain 40743 chr3 198022430 + 74926731 74927237 LTR17 781 - 0 526 68252 44 5 27 241 1 0 142 1 0 72 chain 3746 chr3 198022430 + 74932070 74932176 MER115 684 - 52 159 211239 37 1 0 9 39 41 20 chain 111402 chr3 198022430 + 74948260 74949649 LTR12C 1709 - 0 1709 33834 82 1 0 399 7 11 99 3 160 110 0 118 161 1 0 177 11 54 338 chain 27940 chr3 198022430 + 74959759 74960112 THE1A 353 + 0 351 93202 110 1 0 92 1 0 149 chain 28502 chr3 198022430 + 74961866 74962176 AluYa5 310 - 1 310 91176 183 1 0 126 chain 33523 chr3 198022430 + 74968312 74968778 L1PA11 4918 - 414 872 78362 16 1 0 13 2 0 67 2 3 11 2 1 66 6 0 266 0 1 14 chain 30762 chr3 198022430 + 74977356 74977781 L1PA8 5853 + 5444 5853 82934 67 8 4 6 5 0 43 1 0 44 2 0 71 1 0 9 1 0 51 5 4 17 2 1 92 chain 307928 chr3 198022430 + 74981862 74985286 L1PA3long 6157 - 0 3456 13090 20 0 6 312 0 1 119 0 2 912 0 22 827 0 1 1234 chain 6134 chr3 198022430 + 74989070 74989232 L1MC1 2226 + 1967 2111 184135 11 3 0 15 2 0 54 36 30 6 5 0 22 2 0 6 chain 29380 chr3 198022430 + 74997191 74997569 MLT2A1 477 + 8 383 87172 161 4 1 213 chain 23091 chr3 198022430 + 75004383 75004628 L1HS 6032 - 481 726 115190 245 chain 45774 chr3 198022430 + 75004628 75005120 L1HS 6032 + 5541 6032 62254 4 1 0 487 chain 138950 chr3 198022430 + 75018921 75020435 L1PA2 6032 - 2 1516 26318 1514 chain 20787 chr3 198022430 + 75021576 75021832 L1PA7 6471 + 6215 6467 124658 246 4 0 6 chain 12747 chr3 198022430 + 75022133 75022293 L1P1 4361 + 2531 2695 149264 29 0 4 131 chain 85692 chr3 198022430 + 75022294 75023428 L1PA8 5853 + 3988 5853 41271 66 0 8 153 2 1 124 1 0 201 0 3 9 7 736 272 18 17 32 2 0 68 2 1 14 1 0 50 1 0 17 1 0 93 chain 101347 chr3 198022430 + 75024689 75025807 L1PA4 6152 + 5032 6151 36431 1111 0 1 7 chain 129193 chr3 198022430 + 75033227 75034841 LTR12C 1709 - 36 1709 28268 38 0 1 170 102 0 236 0 4 106 4 2 8 1 0 174 0 159 775 chain 28616 chr3 198022430 + 75049044 75049349 AluYa5 310 - 8 310 90673 5 3 0 297 chain 487031 chr3 198022430 + 75052050 75058500 L1PA7 6471 - 5 6466 7481 7 0 1 6 0 6 746 0 2 67 0 7 9 0 7 291 0 1 384 5 6 240 7 9 4 0 1 397 2 1 271 0 1 41 16 0 65 0 1 65 0 1 247 0 2 220 0 1 5 2 3 457 1 5 194 1 0 60 6 0 51 7 8 284 0 1 92 2 0 645 0 1 89 22 22 81 0 319 274 0 1 426 1 0 4 0 1 66 358 33 232 chain 37049 chr3 198022430 + 75071567 75071986 L1PA4 6152 + 5732 6151 73457 419 chain 23568 chr3 198022430 + 75073452 75073737 L1PA7 6471 - 2 287 112756 11 0 2 179 2 0 93 chain 3319 chr3 198022430 + 75095277 75095316 MER5A1 166 + 2 41 218620 39 chain 6717 chr3 198022430 + 75099873 75100003 L1MC1 2226 + 1888 2012 179557 25 12 11 56 17 12 20 chain 203422 chr3 198022430 + 75112054 75116271 L1PB1 5432 - 51 3594 18966 11 1 0 24 2 0 14 8 5 14 17 10 7 3 0 15 1 0 44 1 0 16 2 1 53 2 0 9 26 20 24 3 0 5 16 15 21 0 1 19 2 1 5 0 1 61 1 31 328 3 0 140 1 0 4 0 1 130 14 6 35 1 0 212 8 7 355 0 3 153 9 10 167 3 11 330 0 221 11 1363 469 523 chain 29339 chr3 198022430 + 75114407 75114712 AluYa8 305 - 0 305 87356 305 chain 23606 chr3 198022430 + 75115456 75115745 L1PA5 6144 - 0 291 112547 140 0 2 149 chain 28399 chr3 198022430 + 75116271 75116578 AluYa5 310 - 5 310 91587 179 2 0 126 chain 4549 chr3 198022430 + 75128719 75128772 L1PA5 6144 - 6 59 200224 53 chain 7081 chr3 198022430 + 75134849 75135004 Ricksha_c 1012 + 86 225 176885 56 11 7 21 13 7 23 12 7 14 1 0 4 chain 553418 chr3 198022430 + 75141124 75147165 L1PA2 6032 - 0 6032 1014 165 8 1 4608 2 0 1258 chain 537946 chr3 198022430 + 75169011 75175030 L1PA3long 6157 - 4 6157 3158 143 2 6 5098 11 139 511 4 5 98 0 1 152 chain 15844 chr3 198022430 + 75180426 75180593 L1HS 6032 + 154 321 138814 167 chain 2812 chr3 198022430 + 75214288 75214322 MER58B 340 + 132 166 228592 34 chain 13344 chr3 198022430 + 75223063 75223350 L1PB1 5432 - 2 262 146916 4 1 0 8 3 0 14 1 0 13 1 0 21 1 0 24 2 0 12 11 8 14 44 31 44 1 0 16 3 2 49 chain 26738 chr3 198022430 + 75290663 75291065 MER57B1 401 + 0 401 97194 136 10 2 52 19 20 42 4 1 22 0 3 44 1 0 16 0 7 56 chain 8566 chr3 198022430 + 75299697 75299816 MER30 238 + 85 223 167927 20 6 25 93 chain 3573 chr3 198022430 + 75304611 75304993 L1MCb 1641 - 1109 1488 214087 11 1 0 14 155 162 28 58 49 15 71 74 9 3 0 17 chain 11767 chr3 198022430 + 75309681 75309814 L1PA2 6032 + 5898 6030 153184 114 1 0 18 chain 49047 chr3 198022430 + 75316581 75317169 LTR10C 591 + 0 591 59713 260 1 0 66 0 1 37 0 1 33 0 1 158 0 1 33 chain 543280 chr3 198022430 + 75322612 75328621 L1PA2 6032 - 5 6026 2300 457 0 1 1339 0 4 2137 0 3 522 0 1 235 0 4 202 2 1 865 5 4 179 0 1 66 chain 153473 chr3 198022430 + 75337883 75339607 SVA_D 2077 + 58 2056 24162 331 0 3 172 40 0 354 0 136 39 1 0 137 0 176 650 chain 34029 chr3 198022430 + 75348846 75349258 L1PA7 6471 - 1 430 77582 110 0 18 25 1 0 276 chain 3031 chr3 198022430 + 75354067 75354102 L1ME1 1623 - 1302 1337 224358 35 chain 14343 chr3 198022430 + 75358428 75358596 LTR12 884 + 0 168 143408 168 chain 350235 chr3 198022430 + 75411025 75415080 HERVE-int 4064 - 0 4064 11596 144 0 1 442 1 0 71 0 10 618 1 3 399 7 8 157 3 0 676 1 2 505 0 1 216 4 1 810 chain 82622 chr3 198022430 + 75423313 75424330 LTR5A 1029 - 0 1029 42496 416 23 22 444 0 13 134 chain 80456 chr3 198022430 + 75442343 75443303 LTR5_Hs 974 + 0 974 43404 50 0 3 405 0 4 311 0 1 117 0 6 77 chain 21584 chr3 198022430 + 75444139 75447293 LTR7B 505 + 0 441 121832 68 2772 16 24 0 10 53 43 79 5 1 0 25 5 0 85 1 0 35 0 4 37 chain 2856 chr3 198022430 + 75444209 75444239 LTR7B 505 + 109 139 227735 30 chain 23116 chr3 198022430 + 75447339 75447644 LTR7 482 + 144 482 115056 80 7 8 26 0 1 6 0 31 186 chain 8746 chr3 198022430 + 75473612 75473787 MER30 238 - 0 183 166943 48 7 4 26 7 8 14 5 26 13 11 0 44 chain 5357 chr3 198022430 + 75488356 75488473 MLT1C 463 + 63 167 191466 56 0 1 4 36 22 21 chain 98426 chr3 198022430 + 75492733 75494086 LTR12C 1709 - 0 1666 37183 84 1 0 84 1 0 313 11 4 11 24 0 57 0 47 95 0 278 243 29 9 17 2 0 49 1 0 5 0 1 22 9 52 295 chain 304194 chr3 198022430 + 75520711 75524483 HERVH-int 3825 - 0 3825 13233 61 0 5 1308 2 50 302 8 13 21 9 5 960 0 2 319 1 0 22 0 1 27 1 0 5 0 1 15 42 0 15 43 0 37 1 38 14 3 0 14 4 0 9 3 2 8 2 1 39 1 56 143 1 0 332 chain 1290 chr3 198022430 + 75523832 75523867 HERVH-int 3825 - 3134 3169 228094 35 chain 23967 chr3 198022430 + 75524493 75524834 LTR7 482 - 8 482 110529 88 4 6 56 0 10 19 1 32 38 0 1 60 6 95 69 chain 520114 chr3 198022430 + 75532611 75538753 L1PA5 6144 - 0 6141 5146 257 0 2 12 1 0 470 0 3 32 0 1 709 1 0 180 0 2 527 0 2 446 0 1 712 0 7 663 0 1 258 0 1 26 0 1 578 21 0 229 0 1 114 0 1 185 1 0 720 chain 2976 chr3 198022430 + 75543323 75543357 MLT1I 406 + 367 401 225503 34 chain 46328 chr3 198022430 + 75549387 75549947 LTR6B 557 - 0 557 61747 122 1 0 315 2 0 120 chain 165284 chr3 198022430 + 75551244 75554618 HERVS71-int 4705 - 956 4045 22617 5 1 0 29 1 0 5 2 0 5 11 8 6 0 3 9 2 0 13 1 0 34 1 0 17 1 0 3 1 0 52 2 0 3 1 0 26 7 6 29 1 0 6 0 1 4 21 15 57 2 0 17 1 0 16 35 29 29 30 22 12 22 16 12 1 0 11 28 23 11 8 5 16 15 12 12 1 0 41 4 0 11 1 0 8 36 26 14 1 0 4 16 12 4 1 0 8 4 0 6 23 16 19 9 7 4 1 0 20 1 0 22 14 5 13 2 1 9 1 0 10 9 7 28 2 0 5 4 3 22 3 1 9 2 0 7 1 0 6 123 101 24 1 0 10 2 0 17 45 42 18 1 0 53 1 0 42 71 56 11 9 5 5 1 0 7 1 0 7 4 1 11 7 4 8 1 0 15 36 24 19 2 1 10 1 0 10 2 0 9 1 0 7 26 0 319 11 10 200 16 17 157 1 0 354 0 2 281 8 3 154 4 0 21 72 27 6 2 0 10 8 4 10 16 10 18 1 0 4 1 0 17 1 0 5 7 4 12 chain 43307 chr3 198022430 + 75556066 75556608 LTR6B 557 - 0 547 65036 55 0 2 132 0 5 143 2 0 210 chain 69051 chr3 198022430 + 75559996 75561053 MER11A 1151 + 0 1144 48786 45 10 109 76 0 4 60 4 0 146 7 8 90 0 7 139 5 6 32 0 12 103 24 0 12 6 13 24 24 6 28 0 1 46 1 0 14 38 40 123 chain 7668 chr3 198022430 + 75564781 75564907 LTR2 463 - 110 219 173113 71 24 7 31 chain 4440 chr3 198022430 + 75564937 75565010 L1P1 4361 + 4269 4341 201446 20 0 1 15 1 0 23 2 1 12 chain 32698 chr3 198022430 + 75585980 75586431 HERVK-int 6823 + 5125 5578 79694 25 0 1 8 0 1 4 6 5 103 0 3 198 1 0 4 0 1 36 1 0 9 5 4 51 chain 87436 chr3 198022430 + 75586869 75587898 LTR5A 1029 + 0 1029 40586 150 2 0 817 1 3 59 chain 6072 chr3 198022430 + 75600464 75600533 LTR5A 1029 + 960 1029 184635 69 chain 89867 chr3 198022430 + 75608119 75609150 LTR5A 1029 + 0 1029 39694 147 1 0 692 1 0 190 chain 19703 chr3 198022430 + 75618491 75618752 L1PA8 5853 + 5586 5842 128085 20 6 4 69 1 0 61 2 1 19 1 0 82 chain 12043 chr3 198022430 + 75622102 75622256 L1MA8 2339 + 1931 2082 152013 23 2 0 55 1 0 73 chain 106679 chr3 198022430 + 75636767 75638166 LTR12C 1709 + 0 1709 35074 266 15 16 32 1 0 24 18 61 65 0 2 184 0 278 184 9 6 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 85525 chr3 198022430 + 75641822 75642851 LTR5A 1029 - 0 1029 41336 155 1 2 720 6 5 147 chain 347091 chr3 198022430 + 75653208 75657276 HERVE-int 4064 - 0 4064 11691 568 0 1 19 1 0 69 0 10 378 0 1 515 2 0 293 3 0 673 13 14 712 4 1 224 2 1 298 7 0 287 chain 113507 chr3 198022430 + 75686280 75688078 L1PA8 5853 + 4382 5853 33223 215 5 6 251 0 5 43 0 1 16 0 2 85 2 7 42 336 0 26 5 6 477 1 0 47 2 0 46 8 9 16 1 0 5 2 1 52 2 1 18 3 2 92 chain 28092 chr3 198022430 + 75688398 75688737 LTR17 781 - 0 336 92674 7 3 0 329 chain 72043 chr3 198022430 + 75694478 75695442 LTR5_Hs 974 + 0 974 47462 459 0 4 155 13 14 26 1 2 8 1 0 5 3 6 137 9 11 147 chain 6170 chr3 198022430 + 75700253 75700367 L1MA6 2487 + 2067 2169 183801 30 26 14 58 chain 42250 chr3 198022430 + 75728876 75729574 L1PB1 5432 - 90 769 66189 11 1 0 4 2 0 15 28 16 13 7 6 39 2 1 16 2 1 53 2 0 8 9 5 7 1 0 5 1 0 5 1 0 23 5 0 7 5 8 115 2 1 177 1 9 120 0 3 11 chain 62013 chr3 198022430 + 75729574 75730370 L1PB1 5432 + 3877 4673 51894 328 0 2 170 2 3 4 1 0 22 4 5 215 3 0 47 chain 106259 chr3 198022430 + 75756621 75757916 L1P1 4361 + 1 1277 35192 573 1 0 256 17 0 396 5 4 47 chain 19708 chr3 198022430 + 75771703 75771974 AluSz 310 + 20 302 128070 119 15 16 81 4 13 10 0 1 42 chain 4886 chr3 198022430 + 75776229 75776285 MER11A 1151 + 85 141 196421 56 chain 159398 chr3 198022430 + 75795030 75796976 L1PA5 6144 - 4 1965 23415 136 7 0 7 13 20 245 8 0 430 0 9 14 0 4 97 0 6 300 0 4 429 0 3 5 10 7 245 chain 89583 chr3 198022430 + 75796976 75798060 L1PA5 6144 + 3113 4200 39759 373 0 4 257 1 0 195 1 0 131 0 1 126 chain 25108 chr3 198022430 + 75805815 75806128 AluSp 311 - 5 311 104240 17 3 0 158 2 0 115 2 0 16 chain 95131 chr3 198022430 + 75824414 75830207 MER57-int 2662 + 168 2647 38051 12 0 5 48 0 2 78 2 0 94 0 5 7 39 0 20 317 6 52 0 4 46 0 1 65 6 9 71 18 14 239 1 0 304 10 12 43 1 0 84 3889 943 92 18 12 68 36 21 10 0 1 7 2 0 6 1 0 26 29 23 27 3 0 22 chain 24721 chr3 198022430 + 75837283 75837588 AluY 311 + 0 300 106319 132 14 9 159 chain 421621 chr3 198022430 + 75843056 75848224 L1PA7 6471 - 2 5341 9497 145 3 4 619 0 2 85 4 1 7 0 4 83 1 2 8 1 4 549 19 19 183 0 1 465 0 1 130 0 2 482 0 99 13 0 1 7 0 4 394 0 1 261 0 4 185 0 1 61 1 0 5 1 3 57 1 11 81 1 0 101 2 1 531 0 1 296 1 0 257 0 40 128 chain 3082 chr3 198022430 + 75855337 75855371 HERVK9-int 4720 + 4566 4600 214799 34 chain 157045 chr3 198022430 + 75855371 75857405 HERVK9-int 4720 - 1105 4684 23715 275 57 695 179 0 1 45 0 924 63 0 2 759 13 0 509 6 5 26 2 1 7 1 0 66 1 0 4 8 5 13 chain 43431 chr3 198022430 + 75858784 75859289 MER9a2 513 - 0 513 64893 12 0 4 113 0 4 380 chain 134890 chr3 198022430 + 75859289 75860961 HERVK14-int 1672 - 7 1661 27036 6 1 0 140 1 0 9 2 0 31 1 0 7 0 1 55 1 0 26 0 1 61 0 1 18 0 1 203 2 0 34 3 0 9 3 1 79 1 0 163 2 1 250 1 0 235 2 0 28 1 0 172 0 1 4 1 0 40 1 0 47 1 0 11 1 0 19 chain 23593 chr3 198022430 + 75861148 75861432 LTR14A 344 - 0 344 112620 242 0 60 42 chain 21332 chr3 198022430 + 75875550 75875802 L1PA4 6152 + 5895 6140 122747 102 7 0 143 chain 543921 chr3 198022430 + 75880915 75887061 L1PA3long 6157 - 8 6156 2224 140 8 1 681 1 2 684 1 0 1849 0 4 811 0 1 5 0 1 141 1 2 552 0 1 871 0 1 401 chain 511785 chr3 198022430 + 75894210 75900266 L1PA5 6144 - 0 6140 6002 101 1 0 11 2 1 193 0 60 17 0 4 337 0 1 41 0 1 270 15 0 621 1 4 980 1 0 344 1 0 239 0 15 479 0 3 116 2 0 494 0 1 582 1 0 631 0 1 273 0 3 161 11 25 131 chain 36721 chr3 198022430 + 75901636 75902089 L1PA5 6144 + 5688 6142 73929 302 8 1 8 0 7 52 0 1 83 chain 3853 chr3 198022430 + 75908340 75908385 MER5A 189 - 132 177 209590 45 chain 76807 chr3 198022430 + 75914957 75915844 L1PA4 6152 - 2081 2976 44932 96 0 1 35 0 1 266 0 4 241 1 2 126 0 1 122 chain 185839 chr3 198022430 + 75915844 75917904 L1PA4 6152 + 4078 6138 20427 2060 chain 4640 chr3 198022430 + 75919333 75919391 L1PA7 6471 + 6406 6466 199188 50 0 2 8 chain 34661 chr3 198022430 + 75923938 75924378 L1PA11 4918 - 1949 2389 76675 14 0 1 414 1 0 11 chain 19431 chr3 198022430 + 75925618 75925922 L1PA11 4918 + 4210 4507 128869 124 4 0 59 2 1 13 20 21 42 5 3 16 1 0 18 chain 122113 chr3 198022430 + 75932121 75933688 THE1B-int 1605 - 12 1605 30340 116 0 5 9 6 1 172 1 0 393 0 1 121 1 2 316 0 25 432 chain 4200 chr3 198022430 + 75939046 75939306 MLT1G3 592 + 187 454 204541 39 1 0 9 188 196 23 chain 28914 chr3 198022430 + 75960699 75961006 AluYg6 310 - 3 310 89398 307 chain 340987 chr3 198022430 + 75966185 75970469 L1PA8 5853 - 0 4287 11873 93 1 0 17 7 6 47 1 0 11 2 1 68 4 2 163 2 3 431 0 2 555 1 2 107 6 5 150 0 2 137 6 1 403 0 1 186 1 2 595 0 2 5 2 0 60 6 14 471 0 1 217 0 3 72 6 1 451 chain 13264 chr3 198022430 + 76004642 76004795 L1PA5 6144 + 5989 6144 147235 7 0 2 146 chain 3558 chr3 198022430 + 76014160 76014205 HY3 101 - 41 86 214352 45 chain 288617 chr3 198022430 + 76078527 76081913 L1PA6 6164 - 8 3407 14113 133 0 7 7 14 6 176 0 1 1464 0 4 120 0 1 541 3 1 148 0 9 313 0 1 7 1 0 27 5 6 427 chain 25225 chr3 198022430 + 76085657 76085954 AluSp 311 - 14 311 103608 297 chain 39347 chr3 198022430 + 76091701 76092184 LTR2B 499 + 9 499 70258 4 0 1 57 1 0 39 0 7 189 0 1 10 1 0 182 chain 20703 chr3 198022430 + 76107269 76107517 L1PA7 6471 - 14 262 124957 248 chain 123201 chr3 198022430 + 76107806 76109178 L1PA4 6152 - 5 1378 29978 1147 0 1 225 chain 80978 chr3 198022430 + 76118935 76119984 MER11C 1089 + 0 1060 43203 247 0 9 59 1 5 349 0 1 20 1 5 42 0 1 125 0 1 56 1 0 8 10 2 130 chain 16114 chr3 198022430 + 76150708 76150924 L1PA5 6144 - 8 215 138012 154 22 13 40 chain 3689 chr3 198022430 + 76151028 76151068 L1PA5 6144 - 175 215 212101 40 chain 3558 chr3 198022430 + 76151076 76151116 L1PA5 6144 - 175 215 214360 40 chain 4175 chr3 198022430 + 76151117 76151164 L1PA4 6152 - 169 216 204907 47 chain 4175 chr3 198022430 + 76151165 76151212 L1PA4 6152 - 169 216 204906 47 chain 4175 chr3 198022430 + 76151213 76151260 L1PA4 6152 - 169 216 204905 47 chain 16732 chr3 198022430 + 76167110 76167302 L1PA5 6144 + 5948 6141 136306 48 0 1 144 chain 6704 chr3 198022430 + 76214967 76215048 Tigger1 2417 + 811 892 179661 81 chain 6665 chr3 198022430 + 76221255 76221330 L1PA5 6144 - 264 339 179946 75 chain 19574 chr3 198022430 + 76221341 76221596 L1PA5 6144 + 5886 6144 128450 86 12 19 77 2 0 67 2 0 9 chain 157906 chr3 198022430 + 76222514 76224516 L1PA8 5853 - 9 1992 23608 63 5 0 21 1 0 19 2 1 61 20 19 51 6 4 41 1 0 43 1 0 136 3 0 5 0 3 188 0 1 179 2 0 319 0 1 581 0 2 200 11 2 43 chain 526400 chr3 198022430 + 76263494 76269489 L1PA4 6152 + 167 6152 4557 904 0 1 140 0 1 976 0 1 760 3 0 290 0 1 275 0 1 1147 0 1 355 12 0 364 1 0 768 chain 18418 chr3 198022430 + 76289293 76289535 L1PA7 6471 - 10 254 131719 136 4 5 38 0 1 64 chain 85534 chr3 198022430 + 76296871 76297805 L1PA2 6032 + 5094 6032 41333 88 0 4 846 chain 4235 chr3 198022430 + 76302209 76302282 MLT2C1 407 - 319 393 204109 44 13 14 16 chain 39952 chr3 198022430 + 76312846 76313386 L1PA8 5853 + 5320 5853 69394 244 1 0 44 2 0 71 1 0 6 21 20 39 1 0 16 2 1 92 chain 7013 chr3 198022430 + 76323424 76323506 L1PA4 6152 + 6065 6152 177371 76 0 5 6 chain 6505 chr3 198022430 + 76329576 76329711 MLT1A 405 + 224 360 181198 64 43 44 28 chain 81548 chr3 198022430 + 76364980 76366039 MER11A 1151 - 0 1151 42958 66 1 0 90 0 1 69 0 44 22 11 45 11 1 0 56 0 4 53 6 8 123 1 0 256 0 11 62 1 0 230 chain 21276 chr3 198022430 + 76374011 76374265 AluY 311 + 36 292 122939 96 0 1 18 1 2 139 chain 26795 chr3 198022430 + 76375777 76376077 L1PA3long 6157 - 5 305 96998 300 chain 7836 chr3 198022430 + 76377633 76377727 AluY 311 + 38 132 172093 94 chain 28379 chr3 198022430 + 76382966 76383299 L1PA5 6144 + 5806 6140 91662 10 0 1 323 chain 9947 chr3 198022430 + 76406286 76406426 L1PA16 3655 + 3385 3524 160849 16 11 10 113 chain 42925 chr3 198022430 + 76407925 76408400 L1PA3long 6157 - 0 475 65510 475 chain 62177 chr3 198022430 + 76443110 76443813 L1PA3long 6157 - 3835 4544 51701 470 0 5 95 1 2 137 chain 344743 chr3 198022430 + 76443813 76447636 L1PA3long 6157 + 2326 6157 11764 68 0 3 742 0 5 3013 chain 119659 chr3 198022430 + 76461482 76463033 THE1A-int 1579 - 5 1579 31159 334 1 14 297 8 36 7 0 3 142 0 1 184 23 4 4 0 1 458 4 0 89 chain 26939 chr3 198022430 + 76463033 76463386 THE1A 353 - 0 353 96489 57 5 4 181 1 0 31 0 1 16 0 1 62 chain 32529 chr3 198022430 + 76463573 76463930 L1PA2 6032 + 5675 6030 79976 344 2 0 11 chain 9809 chr3 198022430 + 76467224 76467370 MER57F 435 + 108 257 161551 47 4 3 13 1 5 81 chain 8746 chr3 198022430 + 76485354 76485449 L1PA2 6032 - 3 98 166939 95 chain 229378 chr3 198022430 + 76494617 76497191 L1PA4 6152 + 3565 6139 17331 2574 chain 130753 chr3 198022430 + 76501330 76502791 L1PA3long 6157 - 0 1463 27916 156 0 3 971 1 0 333 chain 118517 chr3 198022430 + 76506213 76507769 THE1A-int 1579 - 6 1579 31613 182 0 5 324 11 19 37 5 7 12 1 2 249 13 9 285 6 7 117 0 1 73 0 3 241 chain 26363 chr3 198022430 + 76507770 76508122 THE1A 353 - 1 353 98562 51 1 0 41 1 2 148 2 1 85 0 1 23 chain 5370 chr3 198022430 + 76511708 76511770 L1PA2 6032 + 5968 6032 191307 48 0 2 14 chain 38150 chr3 198022430 + 76527195 76527610 L1PA3long 6157 - 15 429 71910 140 1 0 274 chain 28890 chr3 198022430 + 76552097 76552570 MLT2A1 477 - 0 468 89494 19 1 0 35 46 38 5 0 1 206 36 41 111 3 1 11 chain 11985 chr3 198022430 + 76552592 76552854 L1MA8 2339 + 1781 2038 152267 27 36 32 92 4 0 23 6 0 6 33 43 5 1 0 29 chain 35499 chr3 198022430 + 76582746 76583186 LTR7C 471 - 22 463 75555 325 2 3 113 chain 35962 chr3 198022430 + 76586849 76587297 LTR7C 471 - 22 471 74940 326 1 2 121 chain 31765 chr3 198022430 + 76588062 76588511 L1PA8 5853 + 5411 5853 81223 153 1 0 44 2 0 70 2 1 14 9 8 42 3 2 9 10 9 90 chain 15855 chr3 198022430 + 76601266 76601463 MER2 342 + 139 336 138786 197 chain 117366 chr3 198022430 + 76649907 76651533 THE1B-int 1605 - 6 1604 32008 584 0 1 250 9 0 11 0 9 66 0 3 74 12 11 10 9 3 106 24 49 103 3 10 204 57 0 104 chain 4886 chr3 198022430 + 76651956 76652010 THE1B 368 - 314 368 196417 54 chain 19551 chr3 198022430 + 76661573 76661862 L1PA8 5853 + 5565 5853 128513 45 2 0 64 21 28 6 4 0 32 2 1 19 1 0 93 chain 9555 chr3 198022430 + 76683211 76683434 MLT1B 390 - 23 236 162811 59 47 57 61 33 13 23 chain 23837 chr3 198022430 + 76683447 76683737 AluSz 310 + 11 298 111269 274 3 0 13 chain 37073 chr3 198022430 + 76707489 76707940 L1PA7 6471 - 1 453 73423 336 1 2 114 chain 11649 chr3 198022430 + 76712932 76713074 AluSq 315 + 162 303 153699 97 0 1 26 2 0 17 chain 2926 chr3 198022430 + 76738648 76738681 L1MA4 2864 - 65 98 226569 33 chain 9756 chr3 198022430 + 76745545 76745653 LTR17 781 - 457 565 161819 108 chain 43656 chr3 198022430 + 76752535 76753063 L1PA7 6471 - 18 548 64617 130 2 3 6 0 1 390 chain 3980 chr3 198022430 + 76787637 76787688 MER20 218 - 138 189 207681 51 chain 50110 chr3 198022430 + 76788212 76788778 L1PA3long 6157 + 5578 6147 58937 480 0 4 78 1 0 7 chain 69172 chr3 198022430 + 76794989 76795750 L1PA3long 6157 - 3 764 48730 761 chain 4912 chr3 198022430 + 76795750 76795802 L1P3 4156 + 4047 4099 196142 52 chain 225370 chr3 198022430 + 76798975 76801597 L1PA5 6144 + 3508 6144 17565 365 0 1 411 0 2 652 7 0 214 4 13 105 1 5 107 1 0 482 1 5 111 1 6 8 5 0 37 1 0 61 0 3 48 chain 44130 chr3 198022430 + 76865788 76866369 L1PA7 6471 + 5877 6465 64041 213 0 1 40 2 0 166 28 28 35 0 6 66 0 2 31 chain 90436 chr3 198022430 + 76866680 76868115 L1PB1 5432 - 21 1461 39495 7 1 0 13 1 0 6 0 1 14 1 0 24 2 0 14 1 0 5 31 20 11 3 0 16 1 0 40 10 9 10 5 4 31 32 30 12 1 0 10 13 1 15 22 20 82 0 2 199 0 8 177 4 0 25 7 6 266 13 52 7 3 0 6 0 3 126 17 17 151 chain 10197 chr3 198022430 + 76878520 76878638 L1PA7 6471 + 6350 6468 159629 118 chain 5101 chr3 198022430 + 76914406 76914642 MER5C 305 - 65 305 194069 55 41 32 13 105 118 22 chain 4605 chr3 198022430 + 76985006 76985138 MLT1A0 366 - 228 353 199577 19 49 47 24 0 1 20 6 0 14 chain 145923 chr3 198022430 + 77044107 77045790 L1PA6 6164 - 4 1687 25184 144 1 0 12 1 2 213 1 0 1292 0 1 19 chain 10257 chr3 198022430 + 77067001 77067128 MER85 139 - 0 137 159338 40 0 10 87 chain 25062 chr3 198022430 + 77072187 77072539 THE1A 353 + 1 353 104500 109 1 0 31 0 1 45 1 0 9 0 2 35 0 3 5 4 1 51 4 3 57 chain 44837 chr3 198022430 + 77106084 77106599 L1PA5 6144 + 5605 6121 63242 170 0 1 345 chain 7603 chr3 198022430 + 77107047 77107139 L1PA8 5853 + 5760 5853 173522 76 0 1 16 chain 8643 chr3 198022430 + 77158388 77158497 L1MB2 1706 + 1582 1690 167521 16 1 0 92 chain 20606 chr3 198022430 + 77168073 77168439 THE1D 372 + 0 372 125275 40 22 27 32 32 28 28 2 3 13 18 23 4 1 0 174 chain 93628 chr3 198022430 + 77178441 77179726 HSMAR1 1287 - 0 1285 38464 220 2 1 320 1 0 132 5 8 49 47 46 234 6 0 7 4 10 258 chain 12048 chr3 198022430 + 77213534 77213737 SVA_F 1814 + 875 1046 86399 5 0 2 17 97 63 84 chain 7440 chr3 198022430 + 77213556 77213653 SVA_F 1814 + 963 1138 129372 52 0 78 45 chain 87166 chr3 198022430 + 77213737 77214732 SVA_F 1814 + 570 1814 40704 18 3 239 28 1 0 25 0 1 66 0 15 213 1 0 12 2 1 626 chain 38938 chr3 198022430 + 77234603 77235273 L1PB1 5432 + 4749 5378 70817 100 1 9 245 19 0 11 1 0 24 1 0 9 17 12 8 2 0 53 2 1 14 2 1 44 1 0 12 32 19 16 2 0 5 1 0 14 2 0 32 chain 539379 chr3 198022430 + 77259749 77265874 L1PA4 6152 - 9 6151 2913 841 1 5 86 0 11 1115 0 1 402 1 0 166 2 0 2335 0 1 146 1 0 455 0 4 574 chain 15329 chr3 198022430 + 77277672 77277898 L1PA7 6471 + 6250 6470 140394 47 33 26 128 0 1 18 chain 9664 chr3 198022430 + 77284506 77284608 AluYg6 310 - 15 117 162276 102 chain 9205 chr3 198022430 + 77288789 77288941 LTR12C 1709 - 733 1003 164534 21 0 118 64 15 0 7 2 17 43 chain 3307 chr3 198022430 + 77288952 77288988 LTR12C 1709 - 814 850 218839 36 chain 26899 chr3 198022430 + 77301678 77301982 AluY 311 + 2 306 96631 304 chain 5079 chr3 198022430 + 77362597 77362661 L1MA5A 2387 - 91 155 194304 64 chain 22492 chr3 198022430 + 77362758 77363026 AluSp 311 - 34 303 118058 34 0 1 234 chain 22456 chr3 198022430 + 77400994 77401258 L1PA4 6152 + 5887 6151 118216 264 chain 9739 chr3 198022430 + 77440651 77440834 THE1B 368 - 161 362 161894 5 0 1 32 1 0 13 11 31 42 26 24 53 chain 12828 chr3 198022430 + 77450927 77451079 L1PA7 6471 - 509 660 148937 135 1 0 16 chain 40587 chr3 198022430 + 77451079 77451592 L1PA7 6471 + 5959 6467 68458 259 7 0 90 6 8 151 chain 29542 chr3 198022430 + 77477490 77477806 AluYb8 318 - 3 318 86444 93 1 0 222 chain 23911 chr3 198022430 + 77500930 77501222 L1PA5 6144 - 4 300 110856 143 6 10 143 chain 17094 chr3 198022430 + 77526981 77527265 AluSc 308 - 6 298 135334 44 2 1 14 57 66 167 chain 4323 chr3 198022430 + 77555688 77555764 MER20 218 + 39 115 202926 29 12 15 5 3 0 27 chain 31613 chr3 198022430 + 77568669 77569180 L1PA16 3655 - 66 650 81462 11 3 0 67 0 81 133 23 19 74 1 0 55 39 48 7 9 0 89 chain 22036 chr3 198022430 + 77648559 77648800 L1PA4 6152 + 5902 6143 120083 241 chain 24337 chr3 198022430 + 77661820 77662129 AluY 311 + 5 305 108435 121 0 1 39 7 0 134 3 0 5 chain 22354 chr3 198022430 + 77674537 77674815 AluSc 308 - 17 297 118683 13 1 3 264 chain 5136 chr3 198022430 + 77674876 77675019 MER58C 217 + 66 208 193731 17 1 0 8 1 0 10 27 20 5 2 0 7 0 2 5 2 0 8 1 12 42 1 0 6 chain 29577 chr3 198022430 + 77705146 77705456 AluYb8 318 + 0 310 86286 310 chain 39325 chr3 198022430 + 77744856 77745300 L1PA4 6152 + 5706 6150 70289 444 chain 25035 chr3 198022430 + 77746905 77747176 L1PA4 6152 - 259 530 104619 271 chain 20848 chr3 198022430 + 77747176 77747411 L1PA4 6152 + 5900 6136 124470 101 0 1 134 chain 15395 chr3 198022430 + 77749936 77750139 L1PA6 6164 + 5951 6157 140209 80 4 7 119 chain 27200 chr3 198022430 + 77778319 77778684 THE1B 368 + 0 364 95598 13 2 0 27 6 11 121 4 3 27 2 0 92 1 0 70 chain 29042 chr3 198022430 + 77780343 77780732 MLT2A1 477 - 92 477 88798 197 23 21 65 2 0 102 chain 400664 chr3 198022430 + 77780732 77785780 HERVL-int 5654 - 0 5654 10071 76 5 13 129 0 1 71 0 3 164 0 4 253 1 2 168 1 7 153 0 1 4 1 0 551 6 11 179 8 9 213 2 0 77 0 1 4 5 4 331 4 15 374 21 589 359 5 4 161 1 3 46 8 5 136 0 1 389 0 1 23 11 12 908 1 0 199 chain 29624 chr3 198022430 + 77785780 77786221 MLT2A1 477 - 0 477 86138 37 27 68 26 27 26 116 1 0 35 5 2 167 chain 6539 chr3 198022430 + 77793533 77793617 MLT1D 503 - 14 98 180926 84 chain 501570 chr3 198022430 + 77805599 77811836 L1PA7 6471 + 1 6465 6749 337 0 1 66 1 2 926 24 21 276 11 12 259 4 0 555 4 24 5 0 1 153 5 7 706 7 206 444 1 5 621 0 1 5 3 1 118 0 1 462 5 6 51 1 2 218 1 0 128 4 7 331 7 8 5 1 0 485 0 1 7 chain 561667 chr3 198022430 + 77812828 77818814 L1HS 6032 - 0 6017 300 5284 0 16 239 0 14 294 0 1 169 chain 46834 chr3 198022430 + 77824990 77825597 LTR10C 591 - 0 591 61350 81 16 7 364 16 12 119 3 0 8 chain 10067 chr3 198022430 + 77859561 77859685 AluJb 308 + 144 268 160233 124 chain 505163 chr3 198022430 + 77888598 77894975 L1PA7 6471 - 5 6460 6525 7 2 0 92 2 4 40 1 0 15 1 0 121 0 5 215 0 1 261 0 2 79 0 3 15 1 5 157 0 1 155 0 1 308 7 6 242 1 2 35 0 28 178 0 1 81 0 1 403 1 0 109 0 1 56 1 0 98 0 2 150 0 3 30 0 4 63 1 2 152 2 0 114 4 8 491 0 2 39 0 15 31 3 1 46 0 1 121 12 11 191 1 0 369 12 14 179 0 1 58 23 24 258 31 25 20 0 1 7 5 6 201 0 4 77 0 1 181 0 1 182 0 1 247 0 1 392 chain 63563 chr3 198022430 + 77909080 77909782 L1PA3long 6157 + 5452 6157 51211 554 1 4 147 chain 17447 chr3 198022430 + 77912422 77912779 THE1D 372 + 8 348 134385 54 32 13 24 0 14 7 22 8 38 25 27 50 14 15 82 1 0 8 chain 69044 chr3 198022430 + 77921145 77921903 L1PA3long 6157 - 2 760 48791 758 chain 40971 chr3 198022430 + 77926423 77926874 L1PA4 6152 - 9 460 67952 451 chain 118403 chr3 198022430 + 77945600 77947134 THE1B-int 1605 - 5 1605 31647 251 2 3 16 0 1 250 0 28 36 0 1 405 1 0 10 1 0 148 8 33 227 0 8 67 0 3 85 5 6 22 chain 18315 chr3 198022430 + 77947153 77947478 THE1B 368 - 19 368 132037 106 36 46 25 5 4 82 27 42 44 chain 2458 chr3 198022430 + 78008621 78008677 L1ME1 1623 - 1393 1451 233612 22 18 20 16 chain 87902 chr3 198022430 + 78014402 78015414 L1PA5 6144 + 5122 6135 40414 172 25 26 815 chain 5700 chr3 198022430 + 78020621 78020683 L1PA7 6471 + 4686 4748 188109 62 chain 28223 chr3 198022430 + 78020683 78021035 L1PA7 6471 + 4749 5103 92215 234 15 16 19 0 1 84 chain 113414 chr3 198022430 + 78021035 78022389 L1PA7 6471 + 5109 6470 33248 159 1 7 9 0 1 352 1 2 71 0 1 426 2 0 333 chain 3226 chr3 198022430 + 78032705 78032744 THE1C-int 1605 - 1449 1488 220501 39 chain 312095 chr3 198022430 + 78034294 78037738 L1PA3long 6157 - 0 3456 12921 843 0 4 946 0 4 1090 0 4 565 chain 8465 chr3 198022430 + 78048661 78048804 Tigger1 2417 - 2 162 168490 20 22 39 101 chain 40524 chr3 198022430 + 78066267 78066765 L1PA4 6152 + 5652 6152 68558 57 0 1 182 1 0 15 8 10 235 chain 29646 chr3 198022430 + 78078957 78079505 LTR12D 1347 + 40 820 86087 22 6 9 104 96 102 23 0 36 113 0 3 9 0 41 34 8 175 33 24 0 76 chain 9441 chr3 198022430 + 78096569 78096676 L1PA4 6152 + 5985 6092 163354 107 chain 23643 chr3 198022430 + 78105491 78105845 THE1A 353 + 0 353 112343 77 55 54 222 chain 37514 chr3 198022430 + 78117207 78117829 LTR9B 643 - 0 638 72796 26 43 51 52 9 2 66 1 0 5 27 28 190 1 2 12 12 11 11 1 2 126 0 14 40 chain 28747 chr3 198022430 + 78123179 78123533 THE1A 353 - 0 353 90138 243 1 0 110 chain 22788 chr3 198022430 + 78134706 78135067 THE1D 372 - 0 356 116643 86 7 8 44 29 32 155 16 7 24 chain 14833 chr3 198022430 + 78143982 78144332 MSTA 426 - 21 426 141832 52 42 63 32 25 42 10 6 0 62 16 40 37 30 29 38 chain 13989 chr3 198022430 + 78146558 78146764 L1PA8 5853 - 6 208 144612 86 4 3 17 2 1 52 2 1 7 1 0 35 chain 117032 chr3 198022430 + 78157358 78158788 LTR12C 1709 + 0 1709 32114 262 0 1 19 18 19 349 0 278 183 1 0 6 3 1 106 0 4 53 0 1 77 3 0 350 chain 11633 chr3 198022430 + 78158803 78158989 MLT2A1 477 - 286 477 153761 13 12 16 15 8 9 40 2 0 48 0 2 48 chain 16834 chr3 198022430 + 78178427 78178714 THE1C 375 + 0 283 136032 15 2 0 34 67 65 169 chain 14740 chr3 198022430 + 78244720 78244887 L1PA4 6152 + 5985 6151 142139 17 1 0 149 chain 26644 chr3 198022430 + 78264060 78264362 AluY 311 + 3 307 97496 123 1 2 25 0 1 153 chain 8350 chr3 198022430 + 78267703 78267900 MLT1B 390 - 0 190 169121 97 83 76 17 chain 41360 chr3 198022430 + 78272842 78273303 L1PA4 6152 + 5675 6136 67458 461 chain 32103 chr3 198022430 + 78278467 78279113 MLT2A1 477 + 0 477 80687 165 8 5 9 0 1 24 0 1 7 2 0 30 1 2 13 3 0 128 4 0 12 16 0 12 175 31 37 chain 7017 chr3 198022430 + 78283532 78283621 L1MA3 4352 + 3919 4008 177337 89 chain 4703 chr3 198022430 + 78288330 78288431 LTR1C 686 + 481 632 198487 41 31 81 29 chain 144191 chr3 198022430 + 78296356 78298575 MER61-int 3695 + 0 3691 25443 17 27 22 7 1 0 58 5 6 88 39 0 27 1 2 33 15 14 51 7 0 86 34 20 37 22 0 168 2 0 127 0 1 82 9 7 50 11 10 39 0 2 234 1 0 192 80 1646 125 14 14 185 2 0 335 2 0 6 chain 39386 chr3 198022430 + 78315725 78316199 LTR2B 499 + 9 499 70190 5 1 0 51 2 0 46 0 19 369 chain 40326 chr3 198022430 + 78372803 78373254 LTR7 482 + 0 482 68842 230 0 31 221 chain 279257 chr3 198022430 + 78373256 78376934 HERVH-int 3825 + 0 3777 14681 212 0 11 309 5 0 38 2 1 8 2 1 9 4 0 14 7 1 14 1 0 13 3 0 7 19 18 41 1 0 16 21 0 12 189 5 39 0 1 9 1 0 444 15 0 312 0 1 4 9 85 56 8 35 166 1 0 51 0 1 367 0 1 365 0 1 402 9 11 15 0 3 21 8 218 144 0 10 285 chain 797 chr3 198022430 + 78374074 78374112 HERVH-int 3825 + 662 698 231698 21 2 0 15 chain 64167 chr3 198022430 + 78393044 78393819 LTR17 781 - 8 781 50932 196 0 1 169 6 0 76 2 4 70 0 1 256 chain 59705 chr3 198022430 + 78394839 78395964 MER4E1 777 - 0 777 52989 7 0 1 4 1 0 134 1 0 73 15 16 422 347 0 97 1 0 23 chain 58223 chr3 198022430 + 78402204 78402959 MER4E1 777 + 0 769 53854 19 4 0 101 5 18 209 1 0 20 0 1 170 8 13 218 chain 51023 chr3 198022430 + 78424932 78425709 MER4E1 777 - 14 777 58293 8 0 2 174 46 43 125 0 3 116 1 0 43 0 2 5 23 10 65 16 12 132 1 0 14 0 1 8 chain 12233 chr3 198022430 + 78425709 78425919 Tigger2a 444 + 173 381 151289 10 4 1 32 2 1 82 19 23 39 2 0 20 chain 28816 chr3 198022430 + 78438242 78438615 THE1C 375 + 2 375 89821 183 1 2 162 1 0 26 chain 5539 chr3 198022430 + 78485939 78486109 L1MC3 1789 + 1180 1321 189667 21 90 61 59 chain 5659 chr3 198022430 + 78508554 78508618 MER39 703 + 562 626 188488 64 chain 18982 chr3 198022430 + 78509931 78510203 L1PB2 3958 - 122 392 130152 14 8 11 36 1 0 22 2 0 74 2 1 61 1 0 51 chain 433894 chr3 198022430 + 78511935 78517326 L1PA6 6164 - 3 6164 9217 155 5 4 398 0 876 14 0 1 347 0 4 662 1 5 251 0 1 253 0 1 10 18 19 817 1 0 5 5 6 72 4 3 77 141 0 225 1 5 308 1 2 736 0 1 79 0 17 246 0 1 87 0 1 6 1 0 444 0 1 21 chain 3845 chr3 198022430 + 78521027 78521073 MADE1 96 - 50 96 209710 46 chain 4575 chr3 198022430 + 78521089 78521142 L1PA16 3655 - 458 511 199944 53 chain 547636 chr3 198022430 + 78536187 78542314 L1PA3long 6157 + 0 6157 1749 837 0 1 303 0 2 424 0 15 154 0 2 124 0 8 411 1 0 4 0 1 437 0 1 490 0 1 1023 2 1 321 0 1 1596 chain 29178 chr3 198022430 + 78549338 78549647 AluYb8 318 + 0 309 88158 309 chain 66277 chr3 198022430 + 78562001 78562797 L1PA6 6164 + 5369 6162 49966 634 14 15 138 4 0 6 chain 8323 chr3 198022430 + 78585082 78585182 THE1B 368 + 2 102 169265 100 chain 76077 chr3 198022430 + 78586664 78587713 L1PB1 5432 - 581 1642 45429 184 22 23 16 4 0 75 0 3 18 1 2 71 0 1 206 34 43 20 3 4 395 chain 30586 chr3 198022430 + 78602531 78602907 MLT2A1 477 + 0 381 83229 139 1 2 27 0 4 209 chain 37469 chr3 198022430 + 78630361 78630815 LTR7 482 - 0 482 72858 176 0 1 9 12 43 206 4 0 47 chain 160028 chr3 198022430 + 78631631 78633448 SVA_F 1814 - 4 1804 23336 536 99 0 258 0 64 438 0 18 486 chain 4225 chr3 198022430 + 78632167 78632266 SVA_F 1814 - 617 716 78888 99 chain 295880 chr3 198022430 + 78633983 78637619 HERVH-int 3825 - 0 3825 13652 487 8 218 646 1 2 174 0 1 581 4 31 462 15 0 444 1 0 7 5 6 36 2 1 11 28 7 53 10 9 13 8 5 12 1 0 15 7 1 14 4 0 9 1 0 10 1 0 38 5 0 27 0 3 132 4 0 147 0 11 51 0 3 137 5 1 20 chain 38312 chr3 198022430 + 78637621 78638069 LTR7 482 - 0 482 71694 120 1 0 56 0 1 8 0 31 119 0 3 144 chain 555217 chr3 198022430 + 78724334 78730493 L1PA3long 6157 + 6 6157 802 122 14 0 7 14 28 292 15 9 777 0 1 683 0 2 2311 2 1 236 4 0 1682 chain 13113 chr3 198022430 + 78744268 78744420 L1PA5 6144 + 5983 6135 147792 152 chain 69468 chr3 198022430 + 78769462 78770258 L1PA5 6144 + 5352 6144 48621 636 1 0 7 0 1 4 4 0 144 chain 139956 chr3 198022430 + 78815705 78819403 L1PBa 3878 - 130 2870 26149 11 2 0 21 2 1 494 7 4 169 1717 772 47 3 8 401 1 7 44 8 12 94 80 58 597 chain 27877 chr3 198022430 + 78817800 78818110 L1PA2 6032 - 0 302 93429 86 8 0 216 chain 63053 chr3 198022430 + 78826837 78827592 L1PA7 6471 - 1831 2609 51429 60 6 28 294 0 1 395 chain 146681 chr3 198022430 + 78827594 78829363 L1PA7 6471 + 4633 6417 25056 180 0 4 141 0 5 157 0 6 494 2 1 273 0 2 427 5 4 90 chain 113264 chr3 198022430 + 78857820 78859148 L1PA7 6471 + 5133 6470 33295 440 1 0 53 0 6 139 0 2 526 19 21 150 chain 18982 chr3 198022430 + 78902834 78903196 THE1B 368 - 0 368 130153 56 7 6 66 65 71 34 28 29 106 chain 3795 chr3 198022430 + 78934781 78934868 MIR 256 - 64 157 210454 27 0 3 22 26 29 12 chain 3018 chr3 198022430 + 78941365 78941401 MER1B 344 + 137 173 224660 36 chain 26444 chr3 198022430 + 78945435 78945781 LTR7B 505 + 17 436 98252 88 0 10 60 0 38 12 3 27 27 1 3 77 1 0 77 chain 539010 chr3 198022430 + 78993682 78999822 L1PA4 6152 + 6 6151 2990 454 6 0 116 1 0 864 4 1 1723 0 1 517 1 10 469 0 1 100 0 3 135 0 1 975 1 2 638 1 0 135 chain 5583 chr3 198022430 + 79038120 79038274 L1MA5A 2387 + 2200 2301 189249 15 37 15 49 30 0 17 1 0 5 chain 14274 chr3 198022430 + 79049408 79049587 L1PA8 5853 - 832 1018 143637 10 0 2 150 0 5 19 chain 70297 chr3 198022430 + 79049589 79050437 L1PA8 5853 + 5009 5853 48267 231 0 3 321 1 0 45 2 0 73 1 0 6 1 0 52 2 1 19 2 1 92 chain 14276 chr3 198022430 + 79050449 79050618 THE1C 375 - 205 374 143631 169 chain 9826 chr3 198022430 + 79093173 79093304 MER30 238 - 0 124 161469 46 3 0 69 4 0 9 chain 30004 chr3 198022430 + 79095609 79096028 MLT2A1 477 - 76 477 84796 9 5 0 7 0 3 152 25 5 51 1 5 169 chain 2893 chr3 198022430 + 79096084 79096115 MLT1F2 592 + 561 592 227163 31 chain 240037 chr3 198022430 + 79097873 79100812 L1P2 5180 + 815 3750 16777 113 28 28 74 0 1 216 0 1 657 0 3 122 0 1 292 3 0 351 12 1 410 0 1 140 0 1 108 0 1 408 0 1 5 chain 89433 chr3 198022430 + 79103054 79107676 HERVK11-int 2540 + 678 2235 39829 57 11 6 10 30 21 21 15 7 18 5 0 7 32 9 44 3 0 13 1 0 50 65 26 19 3014 79 112 4 3 9 37 24 13 1 0 27 14 3 34 21 1 100 0 10 318 17 12 91 1 2 11 1 0 143 2 3 44 6 5 71 6 10 124 chain 199414 chr3 198022430 + 79109746 79112137 L1PA6 6164 + 3751 6160 19250 32 9 7 373 1 0 614 1 2 159 0 1 363 6 9 544 0 16 289 chain 24386 chr3 198022430 + 79133369 79133654 AluSp 311 + 0 289 108155 5 0 3 230 0 1 50 chain 14593 chr3 198022430 + 79161736 79161895 L1PA4 6152 + 5820 5979 142616 159 chain 14451 chr3 198022430 + 79161901 79162065 L1PA4 6152 + 5979 6143 143043 164 chain 392422 chr3 198022430 + 79178927 79183105 L1HS 6032 - 1099 5277 10380 4178 chain 102196 chr3 198022430 + 79183105 79184197 L1HS 6032 + 4936 6028 36196 1092 chain 107864 chr3 198022430 + 79222305 79223681 LTR12C 1709 + 0 1709 34765 266 0 1 28 5 6 77 9 21 65 0 2 184 0 278 143 0 47 104 13 6 390 8 7 84 chain 170175 chr3 198022430 + 79246211 79248264 L1PA6 6164 - 8 2085 22029 19 0 11 121 11 12 658 2 1 11 5 8 950 0 8 42 0 2 234 chain 20997 chr3 198022430 + 79258515 79258841 L1PB2 3958 - 120 424 123928 63 1 0 22 2 0 17 14 1 56 1 0 62 1 0 58 4 3 16 3 0 6 chain 41439 chr3 198022430 + 79260927 79261421 MER9a3 513 - 0 491 67363 68 2 0 189 1 0 89 1 0 55 0 1 89 chain 25083 chr3 198022430 + 79283622 79284027 L1PA16 3655 + 3242 3619 104392 44 10 8 121 0 1 163 51 24 16 chain 110094 chr3 198022430 + 79291994 79293206 L1PA4 6152 - 11 1226 34185 145 1 0 694 0 4 372 chain 7092 chr3 198022430 + 79330468 79330545 L1PA3long 6157 - 1 78 176822 77 chain 7445 chr3 198022430 + 79333538 79333631 L1PA8 5853 + 5760 5853 174474 93 chain 121297 chr3 198022430 + 79341235 79342731 L1PA7 6471 - 1709 3204 30603 504 0 1 600 4 0 50 0 1 92 0 1 21 12 12 213 chain 139863 chr3 198022430 + 79342735 79344758 L1PA7 6471 + 4766 6467 26162 60 1 0 14 0 7 101 326 0 673 1 0 77 0 2 436 1 0 177 0 1 4 1 2 141 4 0 6 chain 104416 chr3 198022430 + 79349189 79350497 LTR12C 1709 + 0 1709 35637 28 0 2 116 0 1 427 6 5 29 3 7 35 0 278 151 8 12 21 2 1 5 1 0 106 0 4 168 0 102 118 1 2 17 0 8 66 chain 3544 chr3 198022430 + 79369761 79369807 MLT1A0 366 - 293 338 214661 41 1 0 4 chain 76812 chr3 198022430 + 79374674 79375641 MER11C 1089 + 6 1063 45079 185 0 11 34 0 70 7 0 4 215 34 35 123 0 4 5 1 0 38 1 2 324 chain 43877 chr3 198022430 + 79419836 79420436 L1PA8 5853 - 6 597 64363 52 2 0 28 8 7 19 2 1 52 12 10 70 2 0 44 1 0 44 1 0 34 0 1 229 chain 17933 chr3 198022430 + 79421006 79421342 MER1B 344 - 5 344 133024 54 8 18 174 86 79 14 chain 2579 chr3 198022430 + 79477383 79477440 L1MA3 4352 + 4294 4352 231927 20 15 16 22 chain 143983 chr3 198022430 + 79482724 79484372 L1PA5 6144 + 4505 6143 25479 316 1 0 38 14 1 623 0 4 656 chain 5821 chr3 198022430 + 79519157 79519228 L1PA5 6144 - 2 71 186929 7 2 0 62 chain 37942 chr3 198022430 + 79519228 79519667 L1PA5 6144 + 5652 6091 72217 439 chain 33900 chr3 198022430 + 79520841 79521240 L1PA7 6471 + 6066 6465 77771 399 chain 52840 chr3 198022430 + 79525169 79526050 L1PB1 5432 + 4590 5420 57112 31 2 0 176 1 9 145 8 0 4 12 0 139 9 8 12 5 0 24 1 0 7 1 0 11 7 3 9 2 0 52 2 1 15 1 0 45 1 0 9 30 18 18 13 10 10 2 0 23 2 1 21 1 0 13 1 0 16 chain 27997 chr3 198022430 + 79545537 79545836 AluYb8 318 - 23 318 93006 172 4 0 123 chain 5083 chr3 198022430 + 79551875 79551936 LTR12C 1709 + 1007 1068 194259 61 chain 23070 chr3 198022430 + 79557134 79557411 L1PA6 6164 + 5885 6162 115293 277 chain 3253 chr3 198022430 + 79587118 79587154 MER30 238 - 144 180 219943 36 chain 13878 chr3 198022430 + 79600343 79600503 L1PA3long 6157 - 0 165 144988 55 0 4 90 0 1 15 chain 31856 chr3 198022430 + 79609322 79609684 L1PA3long 6157 + 5786 6155 81089 228 0 1 84 5 11 45 chain 3558 chr3 198022430 + 79621211 79621251 L1PA3long 6157 + 6056 6096 214384 40 chain 5254 chr3 198022430 + 79621252 79621316 L1PA3long 6157 + 6096 6157 192480 47 3 0 14 chain 36270 chr3 198022430 + 79660612 79661036 L1PA7 6471 + 6035 6458 74534 286 1 0 137 chain 74569 chr3 198022430 + 79661173 79661998 L1PA2 6032 - 0 820 46226 9 4 0 11 1 0 800 chain 388304 chr3 198022430 + 79672331 79677744 L1PA8A 6298 + 1156 6291 10503 301 0 3 166 1 0 47 1 0 4 1 2 487 0 3 5 7 4 249 15 13 68 0 2 881 2 1 13 20 12 58 2 0 5 0 2 8 1 2 386 0 1 21 0 1 67 0 1 31 0 13 131 306 0 300 21 19 213 14 18 91 1 0 40 8 7 376 1 2 5 1 0 98 0 1 175 0 3 53 0 3 85 13 23 295 20 21 319 chain 13212 chr3 198022430 + 79690564 79690706 L1PA2 6032 + 5886 6028 147421 142 chain 228915 chr3 198022430 + 79734895 79737518 L1PA4 6152 + 3512 6141 17360 166 1 0 209 0 2 459 0 4 419 0 1 279 11 5 244 1 5 494 0 1 238 0 1 102 chain 24648 chr3 198022430 + 79755657 79755999 THE1B 368 + 1 356 106729 40 5 24 104 8 3 4 1 0 180 chain 12944 chr3 198022430 + 79762081 79762232 L1PA6 6164 - 2 153 148451 151 chain 45756 chr3 198022430 + 79762720 79763230 L1PA4 6152 - 977 1488 61776 468 0 1 42 chain 81596 chr3 198022430 + 79763230 79764158 L1PA4 6152 + 5223 6151 42927 155 1 0 519 0 1 253 chain 13750 chr3 198022430 + 79789592 79789868 THE1D 372 - 38 325 145442 87 69 79 82 21 22 17 chain 33378 chr3 198022430 + 79822011 79822476 LTR2 463 + 0 463 78602 73 1 0 286 21 22 30 1 0 22 7 6 24 chain 457606 chr3 198022430 + 79823255 79829666 HERVE_a-int 7009 + 135 7006 8488 21 3 0 29 3 1 73 2 0 6 5 3 22 1 0 4 1 0 7 10 8 14 41 32 5 1 0 18 28 0 35 4 2 24 1 0 44 1 0 21 1 0 54 1 0 34 1 0 98 1 0 12 1 0 10 7 6 34 1 0 9 1 0 38 1 0 17 2 0 27 1 0 67 1 0 26 1 0 8 1 0 73 1 9 25 2 1 36 2 0 16 1 0 51 2 1 21 1 0 15 8 6 12 4 0 19 2 1 6 1 0 15 1 0 22 11 6 7 1 0 10 1 0 5 1 0 5 1 0 51 9 7 50 7 6 23 1 0 16 2 1 114 22 25 14 1 0 11 1 0 17 1 0 13 1 0 3 1 0 18 10 9 34 1 0 37 2 1 19 1 0 4 7 4 35 1 0 36 2 1 4 1 0 36 2 1 44 1 0 23 2 1 16 2 1 23 2 1 10 1 0 95 2 1 25 6 4 29 14 65 116 2 1 14 1 0 38 1 0 167 2 1 106 1 2 51 0 13 233 1 0 90 2 0 93 0 1 318 0 571 61 0 1 366 0 1 44 0 1 790 9 0 112 1 0 28 1 0 9 2 1 73 1 0 6 2 1 41 1 0 24 1 0 86 1 0 12 1 0 216 3 4 38 2 0 102 1 0 15 1 0 3 1 0 57 2 0 20 1 0 12 2 1 76 5 3 138 1 0 43 1 0 31 1 0 10 1 0 16 17 13 36 2 1 20 1 0 47 1 0 3 1 0 28 7 5 45 11 17 29 3 0 54 3 1 26 1 0 31 1 0 6 3 1 13 1 0 26 4 2 30 53 43 23 2 0 4 1 0 11 chain 36011 chr3 198022430 + 79829675 79830130 LTR2 463 + 1 463 74881 372 1 10 28 1 0 28 1 0 24 chain 218190 chr3 198022430 + 79832098 79834623 L1PA3long 6157 + 3580 6149 17991 921 0 2 132 1 0 262 0 1 412 4 8 458 0 1 46 0 1 149 1 37 139 chain 29204 chr3 198022430 + 79863940 79864246 AluYb8 318 - 12 318 88030 306 chain 167321 chr3 198022430 + 79881807 79883854 L1PA7 6471 + 4410 6469 22356 211 1 0 328 5 0 429 5 4 239 0 3 58 25 24 188 0 2 205 0 1 50 0 1 21 0 15 203 0 1 66 3 0 10 chain 37282 chr3 198022430 + 79886627 79887036 L1PA3long 6157 + 5747 6156 73112 409 chain 10271 chr3 198022430 + 79954208 79954331 L1PA6 6164 + 5884 6007 159271 123 chain 15794 chr3 198022430 + 79983387 79983756 THE1D 372 + 2 360 138969 38 0 2 15 78 58 51 6 0 5 9 16 7 1 0 10 27 35 117 1 0 4 chain 15842 chr3 198022430 + 79994246 79994906 L1PB1 5432 + 5114 5427 138815 22 2 0 8 1 0 13 6 2 9 2 0 51 1 0 16 2 1 44 315 0 16 67 50 24 1 0 22 1 0 12 1 0 11 1 0 12 chain 24302 chr3 198022430 + 79999639 80000000 LTR12D 1347 - 0 563 108651 84 44 45 18 0 200 23 0 1 192 chain 92514 chr3 198022430 + 80000008 80001085 LTR12C 1709 - 471 1709 38812 10 0 4 106 1 0 10 1 0 112 0 159 837 chain 4287 chr3 198022430 + 80009325 80009428 MER115 684 + 518 621 203390 27 0 1 8 37 36 31 chain 59832 chr3 198022430 + 80014791 80015457 L1PA4 6152 + 5479 6152 52912 559 0 1 97 0 6 10 chain 14089 chr3 198022430 + 80036217 80036395 L1PA5 6144 - 16 187 144262 126 8 1 44 chain 37563 chr3 198022430 + 80036400 80036815 L1PA5 6144 + 5539 5955 72733 175 0 1 240 chain 4380 chr3 198022430 + 80040475 80040527 MER51A 677 - 426 478 202197 52 chain 85214 chr3 198022430 + 80077638 80078675 L1PA7 6471 - 17 1055 41448 609 3 4 136 1 0 68 14 10 14 0 5 192 chain 29540 chr3 198022430 + 80078678 80079028 L1PA7 6471 + 5064 5414 86477 350 chain 11645 chr3 198022430 + 80094446 80094581 L1PA7 6471 - 17 152 153715 135 chain 17589 chr3 198022430 + 80094581 80094827 L1P3 4156 + 3894 4139 134029 23 0 1 98 0 1 24 5 4 5 0 1 57 2 0 6 2 1 24 chain 20394 chr3 198022430 + 80098692 80098934 L1PA7 6471 - 2 242 125909 10 2 0 230 chain 140839 chr3 198022430 + 80113250 80115101 L1PB1 5432 + 3249 5103 26020 232 1 2 253 38 1 71 1 26 271 0 12 356 0 5 7 17 13 123 0 1 481 chain 47837 chr3 198022430 + 80119659 80120186 SVA_B 1603 + 1078 1603 60601 519 2 0 6 chain 18040 chr3 198022430 + 80153972 80154269 THE1B 368 + 0 368 132758 111 0 3 6 4 3 14 5 77 16 1 0 10 1 0 50 23 22 56 chain 7450 chr3 198022430 + 80163678 80163809 L1MC2 1988 + 232 359 174440 59 1 0 4 0 1 17 15 11 22 0 1 5 1 0 7 chain 336 chr3 198022430 + 80186543 80186608 L1PBa 3878 + 1652 1717 166218 65 chain 12697 chr3 198022430 + 80187003 80187225 L1PA14 3548 + 3275 3485 149457 57 1 0 8 5 1 16 0 4 17 4 2 18 1 0 17 1 0 40 6 0 10 1 0 20 chain 460 chr3 198022430 + 80188173 80188262 L1PBa 3878 + 1717 1811 166218 20 11 16 58 chain 445575 chr3 198022430 + 80195523 80201766 L1PA8A 6298 - 8 6257 8884 66 1 3 17 1 0 4 15 17 86 18 17 384 32 12 126 5 6 57 4 0 228 0 1 98 11 0 8 5 12 323 4 0 173 0 15 44 16 15 99 1 3 619 2 3 58 0 1 185 17 27 107 0 1 183 0 1 219 0 1 98 0 4 201 5 8 203 0 1 55 2 1 153 0 1 78 0 4 222 1 0 5 0 1 133 1 0 51 0 1 146 5 0 537 67 95 68 7 32 28 5 8 349 15 16 57 1 0 79 7 5 9 1 0 18 3 1 65 16 8 19 13 12 33 2 0 7 5 0 15 2 1 8 1 0 5 31 26 15 2 0 11 74 59 17 3 0 25 14 6 5 3 0 10 1 0 15 chain 48059 chr3 198022430 + 80226992 80227559 L1PA4 6152 - 9 578 60436 14 0 1 114 5 6 434 chain 13931 chr3 198022430 + 80227559 80227712 L1PA4 6152 + 5420 5573 144816 153 chain 31622 chr3 198022430 + 80236125 80236580 L1PA8 5853 - 0 443 81445 93 1 0 14 18 17 41 4 3 6 1 0 30 6 0 40 2 0 45 1 0 110 0 1 43 chain 93917 chr3 198022430 + 80245388 80246445 L1PA4 6152 - 13 1065 38374 327 1 0 624 4 0 101 chain 65321 chr3 198022430 + 80246445 80247202 L1PA4 6152 + 4345 5100 50342 267 3 1 299 1 0 108 0 1 79 chain 38401 chr3 198022430 + 80258674 80259107 L1PA4 6152 - 9 444 71572 251 1 0 72 0 3 109 chain 8151 chr3 198022430 + 80261243 80261336 L1PA4 6152 - 15 108 170223 93 chain 8178 chr3 198022430 + 80290998 80291118 MER4A 717 + 1 122 170080 65 8 9 47 chain 21507 chr3 198022430 + 80311992 80312228 L1PA4 6152 + 5736 5972 122118 236 chain 57591 chr3 198022430 + 80331689 80332335 L1PA4 6152 - 0 647 54191 334 0 1 312 chain 35726 chr3 198022430 + 80357460 80358466 HERV30-int 1034 + 137 786 75233 10 24 0 11 7 1 41 1 0 56 20 0 5 13 0 51 5 0 41 23 11 68 1 0 89 15 0 42 160 69 15 2 0 13 34 0 9 61 17 49 39 0 24 51 0 7 0 1 19 chain 48815 chr3 198022430 + 80361183 80361879 LTR30 714 + 0 714 59869 185 0 1 4 1 0 53 6 11 189 7 18 170 32 35 26 2 1 21 chain 107903 chr3 198022430 + 80363470 80364851 LTR12C 1709 + 0 1709 34755 192 16 26 120 22 65 61 0 2 162 4 0 22 0 278 184 1 0 4 4 2 106 0 4 276 1 0 115 7 6 84 chain 28742 chr3 198022430 + 80369918 80370234 AluYb9 318 - 0 318 90164 300 4 6 12 chain 170539 chr3 198022430 + 80435278 80438053 HERVH-int 3825 + 832 3825 21990 402 40 13 42 1 2 140 9 0 91 0 1 56 14 7 105 19 46 55 3 0 8 0 3 14 16 14 241 19 24 662 1 0 5 4 5 223 426 653 64 4 6 111 chain 158176 chr3 198022430 + 80467008 80468771 L1P1 4361 - 492 2255 23565 1763 chain 20952 chr3 198022430 + 80468771 80469002 L1PA3long 6157 + 5925 6156 124098 231 chain 61466 chr3 198022430 + 80469002 80469680 L1PA4 6152 + 5473 6152 52126 670 0 1 8 chain 92326 chr3 198022430 + 80515815 80516889 MER11C 1089 - 16 1089 38869 503 4 3 567 chain 68542 chr3 198022430 + 80528439 80529274 L1P2 5180 - 125 3295 49016 697 0 4 14 3 2334 121 chain 89587 chr3 198022430 + 80529284 80530303 L1PA5 6144 + 5112 6132 39784 812 0 1 207 chain 25209 chr3 198022430 + 80577664 80578019 THE1B 368 - 0 368 103690 192 1 0 18 8 7 87 8 23 41 chain 15741 chr3 198022430 + 80619609 80619966 THE1C 375 + 0 375 139141 22 2 3 4 1 0 58 25 42 13 16 16 21 67 79 85 11 0 32 chain 58872 chr3 198022430 + 80630235 80630970 MER4E1 777 - 0 728 53475 210 5 6 23 8 0 489 chain 144875 chr3 198022430 + 80637404 80639054 L1PA4 6152 - 9 1659 25346 58 9 7 39 0 1 743 1 2 800 chain 303388 chr3 198022430 + 80645199 80648877 L1PA7 6471 + 2777 6458 13270 707 1 2 10 2 1 52 7 11 1919 0 2 145 4 0 616 0 1 174 1 10 8 9 0 23 chain 11112 chr3 198022430 + 80652673 80652793 AluY 311 + 12 132 155768 120 chain 21695 chr3 198022430 + 80664485 80664742 L1PA7 6471 - 796 1063 121408 54 0 10 203 chain 43302 chr3 198022430 + 80664748 80665263 L1PA7 6471 + 5683 6198 65046 515 chain 8366 chr3 198022430 + 80665282 80665382 L1PA7 6471 + 6198 6298 169038 100 chain 14056 chr3 198022430 + 80665398 80665567 L1PA7 6471 + 6298 6467 144360 169 chain 24236 chr3 198022430 + 80670900 80671185 AluY 311 + 16 302 109016 116 0 1 169 chain 84819 chr3 198022430 + 80676194 80677120 L1PA2 6032 - 1 927 41581 926 chain 77973 chr3 198022430 + 80685218 80686264 MER11C 1089 - 39 1089 44529 184 0 1 90 13 5 32 0 1 38 1 0 4 1 5 58 0 2 55 1 0 4 38 39 146 1 0 59 8 12 60 5 7 248 chain 24939 chr3 198022430 + 80701686 80702034 THE1A 353 + 0 353 105116 109 33 38 206 chain 23794 chr3 198022430 + 80703598 80703933 THE1A 353 + 0 333 111507 107 28 27 115 1 0 84 chain 9038 chr3 198022430 + 80705127 80705237 THE1A 353 - 244 353 165402 105 1 0 4 chain 6109 chr3 198022430 + 80705245 80705314 THE1A-int 1579 - 8 77 184355 69 chain 25602 chr3 198022430 + 80710490 80710863 L1PB2 3958 + 3462 3830 101717 78 1 0 77 25 24 114 2 0 20 1 0 55 chain 2770 chr3 198022430 + 80732291 80732323 MER58A 224 - 147 179 229197 32 chain 27087 chr3 198022430 + 80732971 80733264 L1PA4 6152 - 1 294 95981 293 chain 510617 chr3 198022430 + 80758288 80765046 L1PA7 6471 + 7 6467 6108 207 1 0 428 10 9 199 0 1 359 0 4 21 25 0 11 0 25 33 0 3 416 0 1 493 0 3 362 8 5 49 5 7 119 0 2 412 0 1 29 11 15 263 6 2 324 1 0 26 5 3 341 1 0 4 1 3 87 0 2 83 0 1 197 328 10 388 1 0 166 0 1 253 0 1 21 2 3 31 0 1 185 1 4 23 9 8 484 0 1 183 1 2 145 chain 17788 chr3 198022430 + 80773466 80773664 L1PA7 6471 - 43 241 133455 198 chain 205624 chr3 198022430 + 80774639 80778155 L1PB1 5432 - 10 3072 18816 18 1 0 13 1 0 21 9 11 14 1 0 13 8 5 19 17 8 4 1 0 15 1 0 31 19 18 11 4 2 46 33 26 13 21 17 12 1 2 289 5 0 8 0 2 6 8 7 113 0 3 47 4 0 112 30 31 101 1 0 4 4 0 16 2 1 6 0 3 115 2 0 11 0 1 12 0 12 90 14 19 52 7 9 7 1 0 70 1 0 218 56 15 559 16 12 179 9 14 187 0 1 196 1 0 19 397 0 63 3 0 67 0 1 45 0 4 16 chain 3129 chr3 198022430 + 80789313 80789346 THE1C-int 1605 - 1395 1428 222392 33 chain 11412 chr3 198022430 + 80798575 80798719 L1PA5 6144 + 5998 6135 154632 102 7 0 35 chain 68865 chr3 198022430 + 80813070 80813904 L1PA7 6471 - 270 1111 48867 337 0 2 21 1 2 210 0 4 265 chain 84047 chr3 198022430 + 80822366 80823328 L1PA4 6152 - 0 961 41885 123 0 1 73 0 1 68 2 0 559 2 1 135 chain 81538 chr3 198022430 + 80829869 80830781 L1PA4 6152 - 1 913 42962 912 chain 34311 chr3 198022430 + 80840250 80840644 L1PA4 6152 - 6 400 77188 115 0 2 143 2 0 134 chain 12279 chr3 198022430 + 80842553 80842785 L1PB4 2604 + 2139 2363 151081 49 65 57 118 chain 3002 chr3 198022430 + 80878622 80878654 L1MB8 1703 - 720 752 224992 32 chain 48674 chr3 198022430 + 80882116 80883277 MER4D0 881 + 52 876 59978 60 3 12 33 1 10 64 364 1 128 1 0 6 9 2 71 0 1 89 1 0 17 5 17 21 84 88 204 chain 96923 chr3 198022430 + 80886158 80887220 L1PA3long 6157 + 5090 6152 37577 1062 chain 3617 chr3 198022430 + 80896822 80896865 L1PB 1623 + 1012 1055 213387 43 chain 70690 chr3 198022430 + 80916079 80916904 L1P1 4361 - 20 842 48026 12 2 1 23 1 0 157 1 0 629 chain 73518 chr3 198022430 + 80916904 80917720 L1PA5 6144 + 5328 6144 46776 816 chain 119677 chr3 198022430 + 80925329 80926606 L1HS 6032 - 0 1277 31155 1277 chain 550878 chr3 198022430 + 80940797 80946816 L1PA2 6032 - 3 6025 1332 443 4 5 3599 5 6 1457 0 1 511 chain 390523 chr3 198022430 + 80954237 80960279 L1PA7 6471 + 5 6464 10436 78 5 4 156 0 1 8 32 39 121 0 22 38 2 1 98 3 0 105 8 9 36 24 36 24 0 1 64 1 2 5 1 0 32 0 214 6 4 0 104 0 4 36 5 24 138 7 8 137 1 2 305 0 1 307 838 934 339 0 7 52 1 0 19 1 2 54 0 5 10 15 14 604 0 1 310 0 2 54 0 1 222 1 12 114 21 22 171 0 1 247 3 0 200 0 9 46 0 7 70 0 2 91 0 2 146 1 2 521 chain 68180 chr3 198022430 + 80956128 80956907 L1PA5 6144 + 5350 6129 48900 322 0 1 131 1 0 325 chain 15006 chr3 198022430 + 80969740 80970013 THE1D 372 + 2 372 141303 49 3 0 10 1 0 5 34 37 26 4 0 6 10 112 125 chain 3416 chr3 198022430 + 80976191 80976269 MLT1A0 366 - 60 137 216838 24 9 6 20 8 10 17 chain 43640 chr3 198022430 + 80978011 80978524 MER9a2 513 + 0 513 64643 513 chain 112446 chr3 198022430 + 80979991 80981404 L1PA7 6471 - 5 1420 33552 158 2 1 385 0 1 211 1 0 89 1 0 136 0 1 117 1 0 4 1 4 83 10 11 214 chain 27193 chr3 198022430 + 80981404 80981733 L1P3 4156 + 3813 4139 95082 294 2 0 7 2 1 24 chain 157582 chr3 198022430 + 81014459 81016210 L1PA3long 6157 + 4404 6157 23648 978 1 2 623 0 1 149 chain 2759 chr3 198022430 + 81033071 81033394 LTR52 417 + 0 363 229335 22 273 313 28 chain 113217 chr3 198022430 + 81058806 81060068 L1P1 4361 - 1862 3124 33307 1262 chain 66673 chr3 198022430 + 81060071 81060878 L1P1 4361 + 1 826 49799 121 0 14 342 0 1 39 0 3 305 chain 25455 chr3 198022430 + 81072262 81072583 AluY 311 + 0 306 102432 123 20 5 178 chain 12942 chr3 198022430 + 81076841 81077019 L1PA7 6471 - 7 183 148461 138 19 17 21 chain 559309 chr3 198022430 + 81100540 81106564 L1PA2 6032 - 0 6020 397 11 4 0 6009 chain 7891 chr3 198022430 + 81118183 81118337 LTR19-int 1103 + 96 210 171722 28 17 0 7 1 0 17 1 0 5 20 0 50 1 0 7 chain 24142 chr3 198022430 + 81129299 81129590 AluY 311 + 11 295 109508 97 0 1 14 1 0 4 7 0 168 chain 23092 chr3 198022430 + 81153040 81153311 L1PA7 6471 - 10 281 115185 271 chain 9228 chr3 198022430 + 81156538 81156677 L1PA8 5853 + 5717 5853 164403 23 2 1 19 1 0 87 1 0 6 chain 9767 chr3 198022430 + 81156692 81156833 THE1B 368 + 222 368 161758 89 12 17 40 chain 10207 chr3 198022430 + 81167112 81167233 L1PA5 6144 + 6023 6144 159585 121 chain 54399 chr3 198022430 + 81229838 81230544 LTR12_ 688 + 0 688 56099 78 25 0 435 1 0 39 0 8 128 chain 15000 chr3 198022430 + 81230749 81230934 LTR12 884 + 243 451 141320 97 1 2 36 0 22 51 chain 62317 chr3 198022430 + 81231313 81232093 LTR12 884 - 0 884 51748 175 1 0 333 2 0 211 1 108 57 chain 26388 chr3 198022430 + 81307362 81307686 L1PA4 6152 - 0 326 98458 13 0 3 130 6 5 175 chain 4250 chr3 198022430 + 81320942 81320990 U5 65 + 0 48 203868 48 chain 40435 chr3 198022430 + 81335447 81335981 MER41A 554 + 19 554 68682 68 1 5 47 2 1 210 2 0 204 chain 3380 chr3 198022430 + 81345496 81345538 LTR33C 613 + 532 574 217494 42 chain 52027 chr3 198022430 + 81379053 81379639 LTR14C 587 - 0 587 57606 398 0 1 188 chain 27594 chr3 198022430 + 81401498 81401880 MLT2A1 477 + 0 394 94363 33 0 5 45 12 15 40 0 1 30 1 5 210 1 0 10 chain 3095 chr3 198022430 + 81412227 81412263 MER2 342 - 143 179 223013 36 chain 13475 chr3 198022430 + 81421443 81421629 AluSg7 307 - 110 297 146438 52 13 14 121 chain 36895 chr3 198022430 + 81449934 81450341 L1PA4 6152 + 5736 6143 73668 407 chain 104357 chr3 198022430 + 81451724 81452904 L1PA4 6152 - 1 1174 35653 151 7 0 1022 chain 52934 chr3 198022430 + 81480080 81480724 L1PA8A 6298 + 5581 6226 57060 541 6 7 54 0 1 7 4 3 32 chain 142353 chr3 198022430 + 81535706 81537280 L1PA3long 6157 - 0 1587 25752 235 0 1 96 0 3 266 0 1 67 0 4 106 1 0 64 0 4 81 0 1 658 chain 16905 chr3 198022430 + 81537280 81537484 L1PA3long 6157 + 4378 4567 135625 73 15 0 116 chain 4599 chr3 198022430 + 81558630 81558680 U2 167 + 0 50 199638 50 chain 5936 chr3 198022430 + 81559797 81559880 L1PB1 5432 + 5346 5427 185818 25 0 2 18 1 0 13 1 0 18 2 0 5 chain 90012 chr3 198022430 + 81574353 81575390 L1PA4 6152 - 2173 3210 39643 294 1 0 364 6 7 372 chain 187649 chr3 198022430 + 81575393 81577525 L1PA4 6152 + 4010 6141 20275 297 0 1 157 0 1 832 0 4 695 7 0 65 1 0 62 0 1 16 chain 44185 chr3 198022430 + 81595543 81596084 MER41A 554 + 13 554 63961 79 0 1 270 1 0 191 chain 41395 chr3 198022430 + 81599626 81600177 MER41A 554 + 0 554 67418 89 3 4 25 9 10 371 2 3 52 chain 4257 chr3 198022430 + 81629081 81629148 MER58A 224 - 138 206 203785 17 6 7 44 chain 10205 chr3 198022430 + 81648625 81648761 Tigger3a 397 - 112 258 159605 28 2 0 86 0 10 11 0 2 9 chain 37183 chr3 198022430 + 81678178 81678578 L1HS 6032 - 0 400 73256 400 chain 39873 chr3 198022430 + 81678868 81679319 L1PA4 6152 - 0 451 69501 451 chain 38586 chr3 198022430 + 81680960 81681455 L1PA7 6471 - 5 494 71313 79 21 16 234 1 0 160 chain 34243 chr3 198022430 + 81681455 81681871 L1PA7 6471 + 5557 5977 77290 64 1 0 76 5 6 117 0 1 69 0 3 84 chain 18372 chr3 198022430 + 81686133 81686443 MER44D 709 - 32 367 131873 57 7 11 61 4 10 74 4 9 28 23 30 22 0 3 30 chain 6496 chr3 198022430 + 81716922 81717040 L1P3 4156 - 17 131 181281 24 2 1 7 2 0 16 1 0 42 1 0 4 5 6 14 chain 34704 chr3 198022430 + 81717040 81717475 L1PA8A 6298 + 5849 6291 76615 286 8 14 41 0 1 100 chain 15502 chr3 198022430 + 81725120 81725353 Tigger2 2703 + 2414 2649 139891 134 26 28 73 chain 6067 chr3 198022430 + 81725806 81725878 L1PA8 5853 - 0 73 184678 6 0 1 66 chain 15463 chr3 198022430 + 81760581 81760754 L1PA5 6144 - 1232 1405 138627 173 chain 106720 chr3 198022430 + 81760754 81761953 L1PA5 6144 + 4930 6138 35056 34 0 1 332 0 4 368 0 2 44 0 2 421 chain 44261 chr3 198022430 + 81769891 81770358 L1HS 6032 + 5558 6025 63867 467 chain 68796 chr3 198022430 + 81786910 81787666 L1PA3long 6157 - 5 761 48898 756 chain 31192 chr3 198022430 + 81796703 81797135 LTR7 482 + 0 482 82172 138 21 28 45 8 50 44 0 1 176 chain 23816 chr3 198022430 + 81807992 81808336 THE1B 368 + 0 368 111391 40 0 15 117 1 0 26 35 45 125 chain 112303 chr3 198022430 + 81815646 81817101 LTR12C 1709 - 0 1709 33589 82 1 0 85 0 102 99 0 1 6 1 0 19 1 0 5 0 1 27 1 3 51 11 4 66 0 47 145 0 1 128 1 0 30 4 124 103 23 9 44 0 1 24 1 2 27 7 9 403 0 1 60 chain 28534 chr3 198022430 + 81817811 81818128 AluYb8 318 + 1 313 91031 300 5 0 12 chain 113901 chr3 198022430 + 81829270 81830955 THE1C-int 1605 - 27 1605 33121 413 2 1 96 0 1 208 26 23 76 81 82 51 0 13 162 0 7 106 0 1 82 128 0 239 3 5 12 chain 37988 chr3 198022430 + 81832430 81832855 L1PA4 6152 - 0 429 72150 6 0 5 243 1 0 175 chain 172078 chr3 198022430 + 81845407 81847367 L1PA4 6152 - 0 1955 21804 141 7 0 112 2 1 79 0 3 266 0 1 171 2 0 523 1 0 567 0 2 89 chain 115532 chr3 198022430 + 81860292 81861698 LTR12C 1709 - 0 1709 32599 99 2 1 295 2 1 85 0 4 106 2 159 113 0 118 427 0 1 39 5 20 26 0 10 205 chain 12232 chr3 198022430 + 81875330 81875527 L1MA4 2864 - 259 473 151291 14 4 13 83 1 0 33 9 18 53 chain 61260 chr3 198022430 + 81883609 81884334 L1PA5 6144 - 0 720 52226 140 3 4 330 0 2 121 14 6 117 chain 18261 chr3 198022430 + 81904488 81904816 THE1C 375 + 0 335 132173 124 1 21 7 19 0 27 0 3 12 39 37 75 4 9 20 chain 29231 chr3 198022430 + 81907507 81907817 AluYa5 310 + 0 309 87899 132 1 0 177 chain 7762 chr3 198022430 + 81916316 81916411 MER4A1_ 611 - 516 611 172535 95 chain 543416 chr3 198022430 + 81927274 81933421 L1PA4 6152 + 0 6143 2276 270 1 0 310 1 0 3109 1 0 2066 2 0 62 1 2 324 chain 27739 chr3 198022430 + 81949359 81949725 THE1B 368 - 0 368 93909 200 1 0 126 0 5 24 2 0 13 chain 5537 chr3 198022430 + 81980060 81980214 MER58A 224 - 15 174 189699 43 69 74 42 chain 14617 chr3 198022430 + 82008067 82008295 L1PA17 2846 - 1236 1460 142529 168 27 23 33 chain 248200 chr3 198022430 + 82036894 82040504 MER61-int 3695 + 97 3695 16354 101 39 0 72 3 2 30 0 1 4 1 0 97 0 4 234 2 0 229 1 2 26 0 1 4 6 5 23 18 2 116 0 39 73 0 4 73 4 3 27 59 33 72 1 5 15 1 3 102 0 5 102 0 4 126 0 3 176 2 10 20 0 2 69 8 0 120 1 0 49 0 3 24 0 1 396 2 0 41 8 7 70 6 16 22 1 0 15 5 18 55 25 24 132 0 1 134 0 1 5 3 1 6 0 1 196 23 1 152 0 4 84 53 54 46 chain 9176 chr3 198022430 + 82064902 82065047 MSTB-int 1649 + 1492 1635 164678 24 1 3 14 7 6 91 3 0 5 chain 32408 chr3 198022430 + 82089531 82089927 L1PA7 6471 + 6071 6468 80192 142 1 0 66 0 1 31 4 5 152 chain 25824 chr3 198022430 + 82142268 82142570 AluY 311 + 0 296 100774 126 6 0 170 chain 20140 chr3 198022430 + 82153332 82154006 L1PA8A 6298 - 7 672 12206 44 0 1 91 0 2 5 2 0 167 0 1 127 11 0 227 chain 553153 chr3 198022430 + 82154038 82160191 L1PA3long 6157 - 0 6157 1050 156 0 1 2545 0 1 1635 0 2 1817 chain 124723 chr3 198022430 + 82160199 82164373 L1PA8A 6298 - 682 6258 12206 44 1 3 81 1 0 64 37 1310 61 0 155 18 19 12 161 3 2 16 0 5 110 29 24 115 5 9 56 1 0 336 0 6 52 0 2 471 3 4 48 2 0 7 7 9 42 0 4 171 1 0 298 22 19 7 0 4 23 0 1 133 5 17 83 14 7 94 0 13 229 0 2 6 7 5 130 6 7 4 0 1 28 1 5 294 4 0 30 0 2 90 8 9 141 22 21 13 1 0 67 1 0 3 1 0 9 1 0 19 2 0 74 8 0 19 15 14 31 2 0 8 5 0 14 1 0 9 37 31 17 2 0 11 1 0 6 2 1 11 2 1 9 1 0 18 20 11 17 4 2 16 28 17 11 1 0 16 chain 118564 chr3 198022430 + 82166587 82168209 L1PA7 6471 + 4954 6470 31599 56 14 20 563 19 0 23 73 9 8 0 1 45 41 0 114 0 1 124 13 15 325 0 9 185 1 0 18 chain 31261 chr3 198022430 + 82169793 82170221 MER1A 529 - 0 432 82062 55 14 17 261 1 0 27 1 3 69 chain 118087 chr3 198022430 + 82201946 82203369 L1P1 4361 - 747 2064 31776 1255 106 0 62 chain 3811 chr3 198022430 + 82203909 82203949 L1P1 4361 + 3546 3586 210213 40 chain 254872 chr3 198022430 + 82219860 82222748 L1PA4 6152 - 242 3136 15990 468 0 7 806 1 0 180 0 3 137 1 0 219 1 0 925 1 0 149 chain 10342 chr3 198022430 + 82241503 82241622 L1PA4 6152 + 5919 6038 158933 119 chain 10543 chr3 198022430 + 82241622 82241734 L1PA4 6152 + 6039 6151 158068 112 chain 29041 chr3 198022430 + 82265317 82265623 AluYk11 308 - 2 308 88804 306 chain 14022 chr3 198022430 + 82307716 82307886 L1PA7 6471 - 2 171 144497 159 1 0 10 chain 30825 chr3 198022430 + 82307892 82308266 L1PA7 6471 + 5925 6300 82822 125 0 1 249 chain 467463 chr3 198022430 + 82317555 82323268 L1PA7 6471 - 1 5724 8133 189 1 0 320 1 0 39 0 1 47 0 12 237 4 0 670 5 0 597 0 1 355 0 1 369 11 9 711 0 1 351 1 0 38 0 2 186 14 13 402 1 0 31 0 3 145 7 12 57 0 1 819 1 0 52 0 1 5 1 0 46 chain 164123 chr3 198022430 + 82348639 82350446 L1PA3long 6157 - 8 1815 22791 1807 chain 29869 chr3 198022430 + 82350446 82350768 L1PA3long 6157 + 4008 4330 84930 322 chain 39815 chr3 198022430 + 82370784 82371281 MER9a3 513 + 15 513 69603 95 0 1 145 9 8 170 0 1 78 chain 59749 chr3 198022430 + 82372828 82373636 MER4E1 777 + 0 770 52962 247 1 0 271 65 33 152 11 6 61 chain 370740 chr3 198022430 + 82382299 82386487 L1PA2 6032 - 18 4225 11067 718 0 1 32 0 1 76 0 4 95 0 4 2034 1 0 735 1 5 13 84 85 197 0 5 202 chain 179472 chr3 198022430 + 82386650 82388593 L1HS 6032 + 0 1943 21034 1943 chain 531547 chr3 198022430 + 82419460 82425585 L1PA5 6144 - 3 6141 4014 6 4 0 2976 0 1 32 0 15 73 1 2 339 2 4 385 6 0 372 0 1 117 0 1 70 1 0 137 0 1 582 1 0 63 1 0 199 0 1 440 24 27 294 chain 12624 chr3 198022430 + 82425871 82426003 AluYb8 318 - 1 133 149756 132 chain 331847 chr3 198022430 + 82448923 82452619 L1PA4 6152 + 2451 6151 12135 379 0 4 3317 chain 26948 chr3 198022430 + 82483550 82483991 L1PA13 3608 - 172 608 96461 36 11 9 25 5 4 7 2 0 21 1 0 61 2 0 116 1 0 45 24 25 11 0 2 27 0 1 46 chain 5242 chr3 198022430 + 82556511 82556589 MADE1 96 - 12 96 192597 27 4 10 47 chain 42322 chr3 198022430 + 82561368 82561893 L1PA7 6471 - 5 529 66240 150 8 8 177 1 0 189 chain 16192 chr3 198022430 + 82564794 82565032 MER30 238 - 0 238 137777 84 20 28 8 4 0 9 4 0 109 chain 5628 chr3 198022430 + 82582320 82582388 L1PREC2 3366 + 2468 2536 188793 68 chain 18400 chr3 198022430 + 82618796 82619008 L1PA5 6144 - 3 215 131786 212 chain 6699 chr3 198022430 + 82623942 82624020 LTR12F 595 + 402 480 179696 78 chain 154583 chr3 198022430 + 82632985 82634857 SVA_D 2077 + 6 2077 24034 10 6 0 171 0 1 13 1 0 4 0 1 221 0 1 112 0 40 336 2 1 20 0 38 17 0 1 4 0 1 34 1 4 12 0 1 43 0 1 7 0 79 38 0 1 6 0 1 32 13 42 5 0 2 40 0 1 4 5 6 25 0 8 11 6 0 44 5 8 624 chain 24722 chr3 198022430 + 82641732 82642212 MER49 923 + 0 494 106313 26 65 84 82 27 29 45 23 19 122 9 6 81 chain 3387 chr3 198022430 + 82646638 82646680 MER58A 224 - 140 182 217349 42 chain 32706 chr3 198022430 + 82657105 82657477 L1PA4 6152 + 5780 6152 79675 372 chain 170265 chr3 198022430 + 82660248 82662515 L1PA8 5853 - 0 2270 22019 93 1 0 16 1 0 56 1 0 4 6 5 71 2 0 8 0 1 35 1 0 42 29 30 18 3 1 363 5 8 768 1 0 113 16 18 41 0 3 363 1 2 145 8 8 30 1 3 25 chain 93963 chr3 198022430 + 82672029 82673221 L1PA7 6471 - 33 1229 38362 814 1 4 40 6 3 247 17 21 67 chain 32906 chr3 198022430 + 82694092 82694565 MER52-int 3354 + 2293 2750 79361 76 4 5 50 1 0 28 0 4 202 35 15 77 chain 3032 chr3 198022430 + 82708074 82708111 HSMAR2 1300 - 1 40 224351 21 0 2 16 chain 229024 chr3 198022430 + 82708143 82711064 L1PA8 5853 - 0 2936 17357 93 1 0 18 8 7 40 2 1 12 1 0 72 2 0 38 12 11 44 0 2 426 0 4 76 0 3 332 0 1 37 3 1 629 1 0 440 0 29 540 0 1 27 2 0 5 1 0 5 21 9 33 chain 393039 chr3 198022430 + 82750645 82755749 L1PA8A 6298 - 21 5160 10355 706 1 3 75 1 4 145 0 5 90 0 6 380 32 31 4 0 1 89 7 8 331 0 4 156 1 2 129 1 0 6 0 1 157 0 1 63 1 6 8 12 0 395 0 10 61 2 1 44 4 5 494 0 1 96 0 4 61 0 1 192 0 1 87 0 2 136 2 1 5 0 2 72 2 0 4 0 1 276 12 11 636 10 10 108 0 1 10 chain 25280 chr3 198022430 + 82759343 82759676 THE1A 353 - 21 351 103319 29 1 0 24 1 0 56 0 1 112 1 0 87 1 0 21 chain 107409 chr3 198022430 + 82764306 82765728 LTR12C 1709 + 0 1709 34863 41 11 1 19 4 22 213 0 2 166 7 9 97 14 10 70 0 278 184 1 0 4 4 2 106 0 4 71 0 2 112 1 0 206 37 36 54 chain 162888 chr3 198022430 + 82769739 82771578 L1PA4 6152 - 1106 2957 22951 12 0 1 131 0 1 220 0 6 1158 0 1 76 0 3 242 chain 96861 chr3 198022430 + 82771578 82772671 L1PA4 6152 + 5057 6152 37595 243 0 1 800 0 1 50 chain 7316 chr3 198022430 + 82792996 82793095 L1PA15 4387 + 579 688 175326 85 0 10 14 chain 19781 chr3 198022430 + 82810380 82810633 HERVL-int 5654 + 4543 4801 127869 88 1 0 138 0 6 26 chain 32427 chr3 198022430 + 82810633 82811078 MLT2A1 477 - 0 477 80156 36 22 56 180 0 1 33 6 3 168 chain 26490 chr3 198022430 + 82826909 82827215 AluY 311 + 0 304 98079 10 1 0 125 1 0 169 chain 5345 chr3 198022430 + 82835507 82835674 L1MC4 1079 + 594 760 191590 16 34 35 33 41 39 43 chain 8457 chr3 198022430 + 82857889 82857995 L1PB4 2604 + 2437 2543 168530 106 chain 32853 chr3 198022430 + 82879021 82879452 L1PA11 4918 - 1936 2367 79451 107 0 1 28 0 1 131 0 1 5 6 0 109 0 3 45 chain 22221 chr3 198022430 + 82892136 82892397 L1PA7 6471 - 3601 3871 118134 78 0 1 30 0 9 120 1 0 32 chain 288223 chr3 198022430 + 82892397 82895966 L1PA7 6471 + 2870 6468 14149 294 8 16 230 0 1 92 0 1 102 2 0 55 5 26 4 0 1 143 0 1 140 2 3 968 0 1 7 3 1 664 2 1 518 1 0 329 chain 76743 chr3 198022430 + 82915950 82916776 L1PA2 6032 + 5206 6032 45108 826 chain 24892 chr3 198022430 + 82936657 82936924 L1HS 6032 + 5765 6032 105396 267 chain 3036 chr3 198022430 + 82937685 82937743 MSTD 398 - 340 398 224278 23 8 9 8 1 0 18 chain 211122 chr3 198022430 + 82950588 82956128 L1PA5 6144 - 5 2539 18423 333 0 1 68 0 10 835 3022 0 11 1 0 229 2 1 15 0 5 838 20 21 99 0 1 67 chain 19516 chr3 198022430 + 82951833 82952539 L1PA5 6144 + 4188 4894 24544 706 chain 31734 chr3 198022430 + 82956128 82957276 L1PA5 6144 + 4955 6090 24544 20 0 1 38 0 1 1049 15 0 26 chain 45265 chr3 198022430 + 82963404 82963920 L1PA3long 6157 + 5642 6157 62752 15 8 7 493 chain 16324 chr3 198022430 + 82984931 82985287 THE1B 368 - 0 368 137424 90 70 80 29 1 0 18 0 1 7 59 61 82 chain 30158 chr3 198022430 + 83018341 83018674 L1PA5 6144 + 5699 6032 84310 333 chain 9117 chr3 198022430 + 83018675 83018786 L1PA5 6144 + 6032 6143 164981 111 chain 65383 chr3 198022430 + 83020120 83020846 L1PA4 6152 - 12 738 50384 726 chain 23935 chr3 198022430 + 83045259 83045555 L1PA7 6471 - 1681 1981 109329 118 5 9 173 chain 133312 chr3 198022430 + 83045555 83047223 L1PA7 6471 + 4780 6452 27367 169 2 0 382 10 11 183 20 21 76 0 6 333 1 0 425 1 0 66 chain 54369 chr3 198022430 + 83086978 83087558 L1HS 6032 - 0 580 56115 580 chain 94410 chr3 198022430 + 83087558 83088564 L1HS 6032 + 4405 5411 38232 1006 chain 77247 chr3 198022430 + 83116082 83117380 L1PA7 6471 + 5452 6466 44851 162 0 2 70 8 1 22 0 1 162 0 1 301 317 0 145 10 46 101 chain 19566 chr3 198022430 + 83150002 83150268 L1PA4 6152 - 766 1009 128472 185 32 9 49 chain 66472 chr3 198022430 + 83150274 83151097 L1PA4 6152 + 5377 6143 49884 632 1 0 67 16 0 9 0 2 13 42 0 43 chain 382059 chr3 198022430 + 83156849 83161750 L1PA7 6471 + 1536 6465 10693 269 3 18 23 6 7 614 10 11 159 1 3 25 0 1 10 0 1 409 1 2 4 1 0 29 1 0 91 2 1 245 0 3 5 3 0 18 1 2 5 1 0 12 2 0 92 13 11 403 2 1 568 24 0 182 0 1 326 0 22 333 0 1 175 1 3 77 0 2 45 3 9 91 0 1 13 0 3 331 0 2 113 17 18 133 3 0 6 chain 5618 chr3 198022430 + 83187691 83187752 L1P1 4361 - 3307 3368 188885 61 chain 15479 chr3 198022430 + 83187752 83187933 L1PA4 6152 + 5959 6143 139966 113 0 3 68 chain 122107 chr3 198022430 + 83234187 83235698 L1PA7 6471 - 1 1515 30344 32 4 6 188 1 2 618 0 3 216 2 1 207 6 4 237 chain 25480 chr3 198022430 + 83243330 83243628 AluY 311 + 6 302 102313 117 3 0 158 0 1 20 chain 42752 chr3 198022430 + 83266851 83267326 LTR12C 1709 - 1234 1709 65719 475 chain 357490 chr3 198022430 + 83292997 83297480 L1PA7 6471 - 2 4707 11415 11 1 0 137 9 10 13 1 3 671 0 2 251 2 1 9 4 7 30 6 188 187 8 4 253 0 1 126 1 2 439 0 11 110 0 1 174 0 1 513 1 0 195 0 1 80 0 1 156 0 2 238 0 1 46 1 10 634 0 9 36 0 1 140 chain 25209 chr3 198022430 + 83337272 83337617 MER4A1 472 + 123 472 103692 88 22 25 4 0 1 231 chain 109330 chr3 198022430 + 83337938 83339229 L1PA6 6164 - 2351 3638 34338 283 9 0 224 0 1 115 0 1 413 0 3 247 chain 193196 chr3 198022430 + 83339229 83341546 L1PA6 6164 + 3826 6160 19754 301 0 2 374 1 0 35 3 4 584 1 2 707 0 1 24 0 10 132 14 17 141 chain 41138 chr3 198022430 + 83354793 83355265 L1PA5 6144 - 273 748 67734 261 0 3 211 chain 27052 chr3 198022430 + 83362108 83362471 L1PB1 5432 + 4739 5103 96106 63 12 13 288 chain 47354 chr3 198022430 + 83375936 83376882 L1PA8 5853 + 5191 5853 60935 287 305 0 43 1 0 43 1 0 45 7 9 61 1 0 61 2 1 10 20 43 59 chain 28222 chr3 198022430 + 83377014 83377317 AluYk12 309 + 0 303 92224 303 chain 102503 chr3 198022430 + 83389337 83390512 L1PA5 6144 - 0 1173 36131 150 1 2 179 1 0 525 2 0 317 chain 65445 chr3 198022430 + 83390512 83391250 L1PA5 6144 + 4236 4974 50323 738 chain 41555 chr3 198022430 + 83410581 83411094 MER9a3 513 + 0 513 67214 13 1 0 85 12 13 402 chain 20221 chr3 198022430 + 83413533 83413816 AluSq2 311 + 0 279 126471 119 5 1 24 3 0 6 3 6 123 chain 34717 chr3 198022430 + 83449960 83450350 L1PA4 6152 + 5753 6143 76600 390 chain 4765 chr3 198022430 + 83455114 83455209 MSTA 426 - 316 382 197750 53 30 0 8 0 1 4 chain 42375 chr3 198022430 + 83494462 83494921 L1PA2 6032 - 1 460 66183 459 chain 13637 chr3 198022430 + 83494925 83495078 L1PA2 6032 + 5262 5416 145828 149 0 1 4 chain 55542 chr3 198022430 + 83520635 83521256 L1PA4 6152 + 5522 6143 55392 621 chain 177669 chr3 198022430 + 83523603 83525608 L1PA4 6152 + 4128 6152 21196 1288 0 23 354 1 0 27 1 0 78 1 0 166 1 0 88 chain 60751 chr3 198022430 + 83564068 83564842 LTR17 781 + 0 773 52449 243 8 16 68 1 0 71 3 0 134 2 3 174 0 16 7 22 0 41 chain 12335 chr3 198022430 + 83579317 83579467 L1PA4 6152 - 0 157 150875 6 0 7 144 chain 131869 chr3 198022430 + 83585867 83587381 L1PA4 6152 + 4634 6143 27662 242 0 1 368 0 1 767 7 0 130 chain 24732 chr3 198022430 + 83598688 83599139 MLT2A2 560 - 0 560 106267 42 2 0 30 29 34 41 2 111 24 1 0 42 70 68 168 chain 38754 chr3 198022430 + 83621390 83621945 L1PB1 5432 - 553 1136 71072 18 12 20 33 12 11 285 1 22 194 chain 14849 chr3 198022430 + 83622274 83622624 L1PB1 5432 + 5114 5423 141782 24 1 0 5 16 5 10 16 10 11 0 1 39 1 0 18 1 0 44 39 26 20 16 13 6 2 0 24 1 0 22 1 0 9 1 0 14 1 0 8 chain 8210 chr3 198022430 + 83656920 83657008 L1PA3long 6157 - 744 832 169900 88 chain 66730 chr3 198022430 + 83657008 83657746 L1PA3long 6157 + 5418 6157 49764 515 0 1 223 chain 4037 chr3 198022430 + 83665430 83665477 MADE1 96 + 49 96 206818 47 chain 50965 chr3 198022430 + 83667560 83668146 LTR14C 587 - 0 587 58332 398 0 1 188 chain 58586 chr3 198022430 + 83673144 83673866 L1PA6 6164 + 5437 6161 53648 74 9 12 416 2 1 4 0 1 206 1 0 10 chain 187736 chr3 198022430 + 83687280 83690862 L1P2 5180 + 2394 4843 20267 4 0 1 387 0 4 58 1139 2 572 0 1 469 2 1 145 0 1 166 0 1 20 0 1 183 0 1 7 0 1 15 7 2 205 16 15 187 chain 92155 chr3 198022430 + 83687729 83688866 L1PA6 6164 + 5025 6162 38846 568 0 2 236 0 1 306 5 6 12 4 0 6 chain 7840 chr3 198022430 + 83705982 83706070 AluY 311 + 39 127 172076 88 chain 6728 chr3 198022430 + 83706070 83706159 L1PA4 6152 + 6064 6151 179486 77 3 0 5 0 1 4 chain 74295 chr3 198022430 + 83728023 83728988 L1PA10 4194 + 3184 4161 46362 18 4 7 207 0 13 687 3 0 34 1 0 11 chain 97194 chr3 198022430 + 83739301 83740570 L1PA7 6471 + 5158 6457 37515 28 22 26 53 12 15 51 0 14 273 1 6 169 1 0 77 0 1 223 0 1 188 0 3 171 chain 179463 chr3 198022430 + 83749069 83751644 L1PA7 6471 - 17 2257 21036 207 0 1 107 341 0 518 1 0 240 1 0 41 0 1 121 5 6 543 0 4 296 0 1 154 chain 18893 chr3 198022430 + 83749400 83749647 L1PA7 6471 - 10 255 130386 139 1 0 21 14 13 72 chain 48203 chr3 198022430 + 83751644 83752275 L1PA7 6471 + 3572 4204 60098 79 0 8 267 0 1 71 0 2 10 1 0 7 0 1 153 19 9 24 chain 27136 chr3 198022430 + 83756323 83756666 L1PA8A 6298 - 7 351 95810 100 1 2 242 chain 61849 chr3 198022430 + 83757229 83758064 L1PA8A 6298 + 4268 5110 51977 49 0 1 109 21 29 93 1 2 48 2 0 308 8 7 196 chain 41562 chr3 198022430 + 83796329 83796788 L1PA4 6152 - 1608 2067 67087 459 chain 138114 chr3 198022430 + 83796788 83798355 L1PA4 6152 + 4543 6136 26468 636 0 26 40 0 1 55 1 0 835 chain 3492 chr3 198022430 + 83819897 83819976 MER52C 1267 + 882 958 215494 38 10 0 7 8 15 16 chain 62565 chr3 198022430 + 83822867 83823691 L1PA8 5853 + 5027 5853 51645 60 2 0 353 0 11 111 1 0 46 2 0 71 1 0 6 16 15 40 2 1 14 6 5 93 chain 206340 chr3 198022430 + 83853135 83855344 L1HS 6032 - 0 2209 18764 2209 chain 3845 chr3 198022430 + 83893920 83893992 L1MA3 4352 - 0 69 209707 18 7 6 14 1 0 26 1 0 5 chain 15447 chr3 198022430 + 83942428 83942633 L1PA6 6164 + 5956 6161 140058 55 0 7 9 7 0 134 chain 14209 chr3 198022430 + 83963035 83963196 L1PA5 6144 + 5983 6144 143846 161 chain 6966 chr3 198022430 + 84009597 84009679 L1PA16 3655 - 83 165 177707 82 chain 81017 chr3 198022430 + 84010707 84011699 L1PA7 6471 + 5476 6470 43187 145 2 0 58 0 1 30 1 0 527 0 4 229 chain 115408 chr3 198022430 + 84013545 84014879 L1PA3long 6157 - 0 1281 32639 226 57 0 822 0 2 101 0 1 45 0 1 83 chain 10337 chr3 198022430 + 84019597 84019720 MER57-int 2662 + 1029 1152 158954 123 chain 28286 chr3 198022430 + 84020762 84021313 MER51B 395 + 0 395 91990 35 1 0 193 179 24 143 chain 3085 chr3 198022430 + 84021008 84021043 MER51B 395 + 254 289 223227 35 chain 69134 chr3 198022430 + 84022044 84022818 L1PA3long 6157 + 5390 6157 48747 613 7 0 154 chain 53623 chr3 198022430 + 84048449 84049066 L1PA4 6152 - 0 617 56606 113 0 1 36 0 1 22 3 1 443 chain 12951 chr3 198022430 + 84049557 84049822 L1PB1 5432 - 10 254 148425 18 1 0 11 1 0 17 4 3 27 2 0 9 13 11 18 25 14 13 1 0 44 1 0 16 2 1 42 chain 287138 chr3 198022430 + 84059499 84062906 L1PA5 6144 + 2727 6138 14210 11 0 1 431 0 1 1170 0 4 523 1 2 299 1 2 123 1 0 405 3 0 290 1 2 135 1 0 12 chain 19949 chr3 198022430 + 84062931 84063202 AluSp 311 + 2 286 127307 44 26 39 201 chain 19260 chr3 198022430 + 84067277 84067513 L1PA4 6152 - 14 250 129347 125 0 7 10 7 0 94 chain 7576 chr3 198022430 + 84069069 84069184 L1M4c 1769 - 1076 1189 173691 44 1 0 42 7 6 21 chain 32562 chr3 198022430 + 84073343 84073698 L1PA4 6152 - 14 369 79922 355 chain 13166 chr3 198022430 + 84083127 84083301 L1PA13 3608 + 218 390 147594 73 2 0 99 chain 20627 chr3 198022430 + 84135776 84136013 L1P1 4361 - 4111 4348 123372 237 chain 354748 chr3 198022430 + 84136013 84140084 L1P1 4361 + 219 4320 11483 750 1 2 896 0 13 315 0 2 933 0 13 24 0 1 28 1 2 953 1 0 154 1 0 9 0 1 5 chain 21873 chr3 198022430 + 84228285 84228539 AluSp 311 - 34 288 120740 254 chain 15135 chr3 198022430 + 84236123 84236383 LTR7B 505 - 15 505 140959 64 63 293 133 chain 248901 chr3 198022430 + 84238799 84242187 HERVH-int 3825 - 0 3825 16318 631 12 379 720 4 9 515 5 0 140 9 0 194 16 1 242 8 13 119 1 0 82 117 221 13 0 1 15 13 0 5 0 3 5 0 2 22 18 20 53 11 10 77 1 0 11 13 6 316 chain 139826 chr3 198022430 + 84250405 84252010 L1PA4 6152 - 6 1614 26167 881 0 16 71 15 1 332 0 1 306 chain 183332 chr3 198022430 + 84279397 84281463 L1PA3long 6157 - 0 2065 20646 142 0 1 702 0 1 485 0 1 675 4 0 58 chain 20092 chr3 198022430 + 84281464 84281686 L1PA3long 6157 + 3856 4078 126854 222 chain 7296 chr3 198022430 + 84288409 84288517 L1PA8 5853 - 17 123 175467 75 10 9 8 1 0 14 chain 90440 chr3 198022430 + 84315565 84316728 L1PA7 6471 - 13 1173 39492 47 1 0 82 9 10 594 0 1 103 6 0 119 1 2 167 1 2 33 chain 21319 chr3 198022430 + 84328895 84329263 THE1C 375 - 0 375 122807 108 1 0 4 82 90 173 chain 6832 chr3 198022430 + 84354033 84354106 L1PA2 6032 - 5 78 178710 73 chain 24740 chr3 198022430 + 84364829 84365112 L1PA4 6152 + 5860 6143 106223 283 chain 8384 chr3 198022430 + 84379288 84379407 MLT2A2 560 - 426 553 168942 41 7 3 14 0 12 57 chain 65667 chr3 198022430 + 84382291 84383112 L1PA7 6471 - 19 846 50259 135 11 12 172 1 2 212 0 1 214 1 4 75 chain 5844 chr3 198022430 + 84386847 84387011 L1MA3 4352 - 4099 4258 186733 14 12 1 48 57 63 33 chain 502111 chr3 198022430 + 84409102 84415905 L1PA7 6471 - 12 6468 6721 4 0 1 91 0 6 43 1 0 522 0 1 173 1 5 417 3 0 115 0 1 573 0 1 300 0 1 39 0 1 66 0 1 152 0 1 23 0 1 83 21 2 69 333 11 9 0 1 121 18 6 7 0 1 113 1 2 219 2 3 34 12 13 364 0 1 230 0 1 114 1 0 156 0 1 5 5 4 7 0 1 100 0 1 39 0 1 33 1 0 4 0 1 544 4 5 115 0 3 91 6 9 118 15 21 576 3 0 5 0 3 142 3 2 94 4 11 22 33 0 9 6 0 312 0 2 77 chain 79525 chr3 198022430 + 84440095 84441356 L1PA7 6471 - 9 969 43813 236 0 2 76 307 0 216 0 1 314 0 3 112 chain 57794 chr3 198022430 + 84450435 84451086 L1PA5 6144 + 5484 6136 54087 74 0 1 577 chain 245538 chr3 198022430 + 84452233 84455060 L1PA5 6144 - 7 2837 16480 138 1 0 9 0 1 104 1 0 73 1 2 1061 0 2 55 0 1 107 0 1 579 1 0 697 chain 31742 chr3 198022430 + 84470012 84470356 L1PA3long 6157 - 936 1280 80972 344 chain 84123 chr3 198022430 + 84470356 84471298 L1PA3long 6157 + 5211 6157 41849 93 0 4 849 chain 54239 chr3 198022430 + 84483299 84483973 L1PA7 6471 - 4 675 56199 8 2 0 191 5 4 468 chain 43543 chr3 198022430 + 84487912 84488403 L1PA4 6152 + 5661 6151 64749 237 2 1 252 chain 25242 chr3 198022430 + 84502726 84503015 AluY 311 + 18 306 103516 46 1 0 242 chain 141833 chr3 198022430 + 84505408 84507282 L1PA8 5853 + 3973 5853 25851 62 11 13 160 9 12 120 1 0 256 4 8 58 1 2 160 1 2 181 0 2 73 0 2 428 4 3 47 1 0 20 0 4 23 2 0 62 9 8 11 1 0 40 4 0 10 2 1 19 1 0 93 chain 426765 chr3 198022430 + 84515250 84520930 HERVL-int 5654 + 0 5654 9377 218 10 13 110 0 1 65 0 1 235 8 6 362 32 15 45 0 1 46 1 0 524 9 13 39 2 1 4 0 1 214 5 6 4 1 0 14 1 0 4 0 1 20 0 1 161 0 1 192 0 4 43 2 0 24 0 2 19 49 0 144 0 10 114 0 1 90 0 1 433 0 1 25 7 10 919 0 1 157 23 22 876 0 5 7 19 0 63 0 3 92 26 47 4 0 1 218 chain 100023 chr3 198022430 + 84542308 84543506 L1PA7 6471 + 5265 6470 36772 351 1 4 160 3 7 683 chain 48420 chr3 198022430 + 84557645 84558183 L1PA3long 6157 - 0 537 60165 5 1 0 532 chain 63673 chr3 198022430 + 84573429 84574136 L1PA3long 6157 + 5442 6149 51159 707 chain 22484 chr3 198022430 + 84606654 84606915 AluSc 308 - 43 304 118085 261 chain 29104 chr3 198022430 + 84611095 84611405 AluYg6 310 - 0 310 88532 310 chain 33705 chr3 198022430 + 84617007 84617556 MLT2A2 560 - 0 560 78091 40 0 2 105 7 18 177 88 87 47 1 0 84 chain 116769 chr3 198022430 + 84621135 84622727 THE1A-int 1579 - 0 1579 32201 214 1 2 113 0 1 199 7 10 66 9 8 52 20 22 359 19 0 438 0 16 7 17 1 71 chain 6002 chr3 198022430 + 84633055 84633124 L1PA3long 6157 + 6088 6157 185228 69 chain 246878 chr3 198022430 + 84640859 84643627 L1PA4 6152 - 6 2774 16404 882 0 1 176 1 0 1709 chain 42306 chr3 198022430 + 84683479 84683988 L1PA7 6471 - 10 522 66260 252 0 3 257 chain 7079 chr3 198022430 + 84684490 84684698 MER30 238 + 0 238 176894 16 110 140 82 chain 14759 chr3 198022430 + 84699425 84699582 L1PA2 6032 + 5875 6032 142069 157 chain 26289 chr3 198022430 + 84702658 84702941 L1PA2 6032 + 5748 6031 98864 283 chain 28741 chr3 198022430 + 84706451 84706768 L1PA3long 6157 - 11 328 90167 317 chain 35198 chr3 198022430 + 84711104 84711504 L1PA4 6152 - 0 400 75921 400 chain 39002 chr3 198022430 + 84711929 84712386 L1PA7 6471 - 1 457 70742 190 1 0 266 chain 77293 chr3 198022430 + 84726295 84735807 L1PA3long 6157 - 0 1011 44835 704 8501 0 307 chain 47698 chr3 198022430 + 84735808 84736346 L1PA3long 6157 + 5619 6156 60698 199 1 0 338 chain 15666 chr3 198022430 + 84752225 84752461 L1PA13 3608 + 3266 3491 139378 7 2 0 62 1 0 57 8 5 48 2 0 3 2 0 18 1 0 25 chain 56680 chr3 198022430 + 84759281 84760007 L1PB1 5432 - 2644 3380 54732 13 4 14 168 0 1 5 0 2 5 3 0 130 3 0 5 0 3 390 chain 187659 chr3 198022430 + 84760033 84762678 L1PB1 5432 + 2788 5409 20273 52 1 2 669 1 2 39 6 6 148 0 1 18 13 7 173 5 0 6 3 8 43 0 1 264 0 1 380 0 2 18 3 0 475 2 16 12 4 3 16 8 0 8 16 10 45 9 8 16 5 4 27 1 2 10 1 0 16 15 0 7 1 5 19 7 4 15 6 4 23 1 0 18 1 0 13 1 0 5 chain 36020 chr3 198022430 + 84769002 84769471 L1PA8 5853 - 0 459 74872 93 1 0 17 6 5 45 1 0 14 1 0 71 2 0 45 1 0 47 0 1 77 4 0 44 chain 89728 chr3 198022430 + 84784105 84785103 L1PA3long 6157 + 5142 6143 39745 210 0 1 179 0 1 306 0 1 303 chain 18708 chr3 198022430 + 84796106 84796301 AluYb9 318 + 120 315 130924 195 chain 516482 chr3 198022430 + 84809863 84816305 L1PA7 6471 + 0 6465 5532 86 0 1 1355 0 4 598 4 3 584 2 1 62 3 1 520 0 1 230 0 4 34 1 2 158 2 0 85 7 5 89 7 6 51 0 1 119 3 0 671 0 4 154 0 1 153 1 2 228 0 9 73 1 3 323 1 0 56 13 20 768 chain 42249 chr3 198022430 + 84827016 84827517 L1PA5 6144 + 5636 6135 66334 336 2 0 9 1 6 5 5 0 143 chain 14930 chr3 198022430 + 84840942 84841161 L1MA3 4352 + 76 295 141537 14 0 3 30 0 1 12 0 1 10 0 1 7 1 0 20 1 0 3 4 0 117 chain 69965 chr3 198022430 + 84841880 84842970 MER11B 1079 + 0 1079 48405 457 18 17 22 35 23 4 0 1 12 6 8 168 4 8 18 64 58 21 14 15 40 0 1 171 7 6 29 chain 529212 chr3 198022430 + 84858927 84865050 L1PA5 6144 - 13 6137 4274 159 2 0 452 0 1 90 0 1 763 2 1 4 0 1 887 0 1 995 1 0 54 13 0 29 0 3 210 0 4 627 0 1 238 0 1 714 0 1 362 0 4 521 chain 33773 chr3 198022430 + 84868052 84868435 L1PA4 6152 + 5768 6151 77979 383 chain 52166 chr3 198022430 + 84883917 84884565 LTR12_ 688 - 13 688 57519 105 0 8 80 0 4 122 0 7 7 0 2 124 0 6 210 chain 31737 chr3 198022430 + 84923916 84924354 L1PA11 4918 - 416 841 81264 14 1 0 14 2 0 66 25 23 54 8 0 254 chain 495473 chr3 198022430 + 84934130 84940285 L1PA6 6164 + 0 6156 7103 161 1 17 58 0 2 222 4 5 43 12 14 33 11 12 321 15 0 80 24 17 38 1 0 429 0 1 156 15 5 70 0 2 230 0 1 265 1 0 150 0 2 849 1 2 11 0 1 92 0 1 267 0 1 144 0 1 476 0 1 143 0 1 968 10 8 359 6 8 489 chain 71830 chr3 198022430 + 84945552 84946426 MER11D 897 - 0 897 47546 287 1 24 129 1 2 445 1 0 10 chain 169639 chr3 198022430 + 84947674 84949762 L1PA6 6164 - 4 2081 22098 155 5 6 393 0 1 201 0 1 66 0 1 16 15 0 8 1 0 4 0 1 1224 chain 11300 chr3 198022430 + 84955658 84955824 L1PA8 5853 - 0 162 155058 58 2 0 31 5 4 19 2 1 49 chain 45083 chr3 198022430 + 84959745 84960252 L1PA4 6152 - 345 859 62960 208 0 7 299 chain 27102 chr3 198022430 + 84960252 84960565 L1PA4 6152 + 5835 6148 95936 313 chain 96354 chr3 198022430 + 84967561 84968683 SVA_C 1631 + 331 1628 37715 288 0 3 150 0 40 25 0 134 31 1 0 608 1 0 18 chain 8533 chr3 198022430 + 84974209 84974414 L1MA7 2200 + 1825 2003 168115 4 1 0 18 20 24 72 11 0 34 33 14 12 chain 26375 chr3 198022430 + 85030128 85030422 L1PA2 6032 - 1 295 98511 294 chain 19500 chr3 198022430 + 85035705 85035914 L1PA3long 6157 + 5948 6157 128660 209 chain 22687 chr3 198022430 + 85035955 85036228 AluSp 311 + 35 307 117134 97 1 0 175 chain 20242 chr3 198022430 + 85041534 85041780 AluSc 308 + 35 281 126405 246 chain 9014 chr3 198022430 + 85063483 85063675 MER44A 345 + 149 297 165524 72 65 21 55 chain 56015 chr3 198022430 + 85146151 85146791 L1PA4 6152 - 0 640 55115 143 0 6 6 6 0 485 chain 97536 chr3 198022430 + 85153173 85154292 L1PA3long 6157 - 974 2071 37410 396 22 0 400 0 1 79 1 0 221 chain 84868 chr3 198022430 + 85154292 85155247 L1PA3long 6157 + 5192 6149 41532 340 0 2 615 chain 10139 chr3 198022430 + 85169019 85169147 L1PA7 6471 + 5493 5621 159905 128 chain 64867 chr3 198022430 + 85169148 85169946 L1PA7 6471 + 5621 6429 50625 81 0 1 90 0 1 44 0 2 219 5 12 68 1 0 290 chain 2813 chr3 198022430 + 85169946 85169979 L1PA7 6471 + 6436 6469 228578 33 chain 137032 chr3 198022430 + 85181987 85183575 LTR12C 1709 - 0 1709 26633 481 0 4 106 3 1 5 1 0 36 0 2 226 0 118 730 chain 511337 chr3 198022430 + 85202223 85208000 L1PA3long 6157 + 0 6156 6036 152 0 1 263 4 1 359 0 128 2145 33 0 439 2 1 169 0 287 1878 0 1 68 1 0 264 chain 2774 chr3 198022430 + 85205150 85205179 L1PA3long 6157 - 1989 2018 225779 29 chain 3391 chr3 198022430 + 85272691 85272731 MER65A 464 - 93 133 217273 40 chain 365371 chr3 198022430 + 85272754 85277532 L1PA7 6471 - 1 4762 11222 4 1 0 105 77 78 145 2 1 120 6 12 6 6 0 201 0 1 19 8 11 146 2 0 406 0 1 640 1 0 76 3 5 481 31 15 159 27 22 263 0 4 63 15 6 178 3 4 161 0 1 31 9 10 46 0 1 416 16 6 517 10 22 378 chain 23689 chr3 198022430 + 85294400 85294672 AluY 311 + 20 294 112085 112 0 1 126 0 1 34 chain 30588 chr3 198022430 + 85295253 85295598 L1PA5 6144 + 5791 6136 83221 345 chain 10440 chr3 198022430 + 85314468 85314849 MSTD 398 - 12 398 158528 28 4 6 12 211 218 7 4 0 115 chain 3633 chr3 198022430 + 85334178 85334345 L2a 937 - 611 812 213104 45 106 140 16 chain 24287 chr3 198022430 + 85336975 85337257 L1PA4 6152 + 5869 6151 108726 169 0 1 95 1 0 17 chain 542672 chr3 198022430 + 85339080 85345090 L1PA2 6032 + 3 6032 2398 251 0 2 485 0 1 2385 1 3 2565 0 1 88 0 13 235 chain 4178 chr3 198022430 + 85366653 85366721 MLT1A1 405 - 70 156 204863 47 7 25 14 chain 21035 chr3 198022430 + 85393256 85393533 AluSc8 310 + 13 288 123789 121 4 1 123 2 3 27 chain 20473 chr3 198022430 + 85403434 85403658 L1PA4 6152 + 5922 6146 125699 224 chain 236746 chr3 198022430 + 85447157 85449917 L1PA5 6144 - 0 2821 16941 112 1 0 221 0 1 496 13 17 300 0 13 67 0 1 160 0 12 209 0 1 184 0 8 208 0 20 738 0 2 51 chain 22572 chr3 198022430 + 85462047 85462311 AluYf5 307 + 38 303 117710 168 4 5 92 chain 6779 chr3 198022430 + 85467372 85467466 L1MC2 1988 + 1771 1861 179113 76 4 0 14 chain 122710 chr3 198022430 + 85484177 85485725 L1PA7 6471 - 6 2164 30159 60 0 1 82 17 17 27 1 3 212 0 1 408 14 10 22 2 0 209 9 10 23 0 600 325 1 12 136 chain 27708 chr3 198022430 + 85517041 85517331 AluYa5 310 + 19 309 94012 290 chain 10584 chr3 198022430 + 85538698 85538816 L1PA2 6032 + 5914 6032 157898 118 chain 8041 chr3 198022430 + 85546278 85546431 L1PA17 2846 - 273 417 170812 55 6 0 16 4 0 33 23 24 16 chain 104293 chr3 198022430 + 85553174 85554389 LTR12C 1709 - 0 1709 35671 45 1 0 39 1 0 216 0 4 118 0 1 40 0 1 17 0 4 21 0 485 627 0 1 90 chain 15200 chr3 198022430 + 85574123 85574318 L1PA7 6471 + 6277 6470 140775 188 2 0 5 chain 22313 chr3 198022430 + 85641865 85642133 L1PA7 6471 - 10 281 118858 234 0 3 34 chain 10977 chr3 198022430 + 85642330 85642453 L1PA4 6152 - 1 125 156283 7 0 1 116 chain 29654 chr3 198022430 + 85686470 85686788 AluYb8 318 + 0 318 86051 318 chain 14492 chr3 198022430 + 85715065 85715238 L1P1 4361 + 4156 4328 142911 149 1 0 23 chain 28998 chr3 198022430 + 85717574 85717945 THE1B 368 + 0 368 88992 172 2 1 20 2 0 175 chain 34279 chr3 198022430 + 85735791 85736238 MER4A1 472 + 0 472 77239 15 0 2 82 0 2 125 5 26 220 chain 56799 chr3 198022430 + 85740658 85741281 L1PA4 6152 + 5524 6152 54653 617 0 5 6 chain 41489 chr3 198022430 + 85749096 85749592 L1PA7 6471 + 5921 6417 67292 496 chain 180661 chr3 198022430 + 85764658 85766906 L1PA7 6471 - 2 2269 20926 457 0 2 5 8 6 297 0 2 79 1 0 230 0 7 88 0 1 113 0 1 452 0 1 120 0 2 84 2 4 183 0 4 129 chain 4741 chr3 198022430 + 85771275 85771365 MER52A 1651 - 734 862 198010 21 27 65 42 chain 191303 chr3 198022430 + 85846413 85848813 L1PA7 6471 - 2 2394 19931 11 0 4 131 10 11 34 15 11 5 0 1 130 1 0 421 2 0 84 21 14 184 0 1 85 12 11 382 2 0 290 0 1 535 2 3 43 chain 143941 chr3 198022430 + 85861703 85863544 L1PA7 6471 - 3 1853 25487 146 14 14 606 0 2 79 1 0 27 4 5 69 1 10 87 0 1 23 10 9 432 5 3 63 1 0 212 0 1 61 chain 27506 chr3 198022430 + 85863544 85863888 L1P1 4361 + 3005 3350 93879 154 0 1 190 chain 40104 chr3 198022430 + 85864080 85864582 L1P3 4156 + 3639 4139 69173 182 6 7 279 2 0 7 2 1 24 chain 43674 chr3 198022430 + 85903395 85903931 L1PA7 6471 + 5926 6461 64599 462 11 10 63 chain 9039 chr3 198022430 + 85909620 85909951 MLT1A0 366 - 12 359 165394 21 4 7 69 8 18 13 149 158 10 0 1 4 1 0 18 1 0 7 5 0 21 chain 111320 chr3 198022430 + 85942398 85943644 L1PA4 6152 + 4892 6139 33855 1080 0 1 166 chain 30558 chr3 198022430 + 85946400 85946718 AluYb8 318 - 0 318 83313 318 chain 219189 chr3 198022430 + 85965323 85967790 L1PA4 6152 - 1 2488 17934 845 0 5 946 0 4 86 0 11 590 chain 268430 chr3 198022430 + 85991379 85996131 L1P2 5180 + 1955 5178 15264 78 1506 0 280 17 18 541 4 0 121 1 0 1697 0 6 69 22 0 317 8 7 47 14 13 25 1 0 4 chain 113973 chr3 198022430 + 85991490 85992749 L1PA2 6032 - 7 1264 33102 1251 2 0 6 chain 19419 chr3 198022430 + 85992749 85992963 L1PA2 6032 + 4568 4782 125606 214 chain 79169 chr3 198022430 + 86006991 86008086 L1PA8A 6298 + 5220 6218 43968 28 0 9 97 4 0 131 1 0 4 0 3 6 3 0 292 101 0 428 chain 24131 chr3 198022430 + 86061857 86062139 AluY 311 + 0 299 109580 52 0 13 66 0 2 133 0 2 31 chain 185964 chr3 198022430 + 86067032 86069048 L1PA2 6032 - 6 2023 20416 735 0 1 1281 chain 100025 chr3 198022430 + 86069048 86070142 L1PA2 6032 + 2923 4021 36692 143 0 4 951 chain 18819 chr3 198022430 + 86077144 86077353 L1PA4 6152 + 5934 6143 130613 209 chain 530170 chr3 198022430 + 86088231 86094365 L1PA4 6152 + 0 6152 4171 226 16 0 1222 0 1 248 0 1 880 0 1 82 0 1 106 0 2 1574 6 14 131 0 12 799 0 1 390 0 2 285 0 2 156 0 3 13 chain 51350 chr3 198022430 + 86113211 86113796 L1PA5 6144 - 4 589 58063 214 0 1 120 1 0 250 chain 8533 chr3 198022430 + 86113796 86113890 L1PA5 6144 + 5377 5471 168116 94 chain 5241 chr3 198022430 + 86140319 86140418 THE1D 372 + 105 206 192609 60 26 28 13 chain 33857 chr3 198022430 + 86141358 86141841 LTR2B 499 - 0 490 77845 182 1 0 10 0 1 52 6 7 76 3 0 5 0 3 33 0 19 42 1 0 7 11 0 48 1 0 5 chain 524127 chr3 198022430 + 86142121 86148242 L1PA5 6144 + 0 6140 4755 1154 0 3 280 0 1 755 0 2 119 1 2 664 0 1 182 0 1 38 1 0 93 0 1 446 0 1 165 0 1 313 3 1 126 0 4 632 0 1 305 0 4 506 4 5 334 chain 131268 chr3 198022430 + 86151555 86153244 L1PA10 4194 - 33 1718 27803 11 1 0 34 3 0 30 11 7 433 1 3 23 1 0 226 1 0 265 1 3 336 0 1 165 0 1 147 chain 6524 chr3 198022430 + 86179934 86180158 L1P1 4361 - 33 255 60311 23 1 0 157 1 0 42 chain 84079 chr3 198022430 + 86180187 86181233 MER11C 1089 - 26 1089 41866 325 0 1 45 8 12 295 1 0 64 0 4 62 0 9 246 chain 10253 chr3 198022430 + 86181233 86181585 L1P1 4361 - 255 607 60311 352 chain 100781 chr3 198022430 + 86181585 86182741 L1PA5 6144 + 4979 6139 36563 851 0 1 125 6 8 75 0 1 99 chain 70446 chr3 198022430 + 86205977 86206878 L1PA8A 6298 - 7 910 48185 37 0 7 472 20 14 322 0 1 50 chain 10444 chr3 198022430 + 86236178 86236307 L1PA7 6471 - 810 938 157801 45 1 0 83 chain 63217 chr3 198022430 + 86236307 86237086 L1PA7 6471 + 5681 6470 51355 39 1 8 48 0 4 6 6 1 445 0 3 78 2 3 154 chain 43700 chr3 198022430 + 86250359 86250878 L1PA7 6471 + 5945 6464 64567 114 0 1 251 1 0 153 chain 23843 chr3 198022430 + 86255304 86255593 L1PA5 6144 + 5831 6120 111229 52 0 2 61 1 0 54 1 0 120 chain 18755 chr3 198022430 + 86261559 86261783 L1PA5 6144 + 5920 6144 130814 224 chain 21483 chr3 198022430 + 86262085 86262437 THE1C 375 - 0 375 122205 26 1 0 70 0 1 80 20 12 5 0 2 30 9 9 24 7 9 21 2 29 57 chain 28811 chr3 198022430 + 86304781 86305087 AluYf4 310 - 4 310 89837 306 chain 15482 chr3 198022430 + 86331846 86332105 LTR12C 1709 + 932 1197 139957 68 0 1 107 42 10 15 8 45 19 chain 29814 chr3 198022430 + 86338946 86339277 L1PA2 6032 - 257 596 85396 135 0 8 196 chain 20839 chr3 198022430 + 86339277 86339521 L1PA2 6032 + 5787 6029 124489 234 2 0 8 chain 531185 chr3 198022430 + 86346180 86352314 L1PA5 6144 + 3 6128 4058 116 15 1 1046 7 8 597 0 1 684 0 1 508 0 1 1264 0 1 397 1 0 31 0 2 573 0 1 345 1 0 305 1 0 243 chain 31743 chr3 198022430 + 86372703 86373125 L1PA7 6471 + 6036 6468 81259 190 5 6 141 0 13 75 4 0 7 chain 26095 chr3 198022430 + 86379346 86379634 L1PA5 6144 - 13 301 99646 288 chain 23494 chr3 198022430 + 86393022 86393327 AluSp 311 + 10 311 113151 122 14 10 169 chain 25195 chr3 198022430 + 86401454 86401758 L1PA6 6164 - 2 306 103766 304 chain 35504 chr3 198022430 + 86433329 86433891 MER41B 635 - 56 625 75547 18 7 12 27 0 8 6 7 0 26 27 26 212 0 1 73 43 44 116 chain 27552 chr3 198022430 + 86436041 86436431 LTR7 482 + 0 476 94495 101 15 14 17 0 51 41 5 37 44 0 1 14 0 2 43 1 2 109 chain 7922 chr3 198022430 + 86437604 86437802 MER30 238 - 0 207 171508 42 62 83 13 14 2 67 chain 40195 chr3 198022430 + 86438720 86439246 LTR10G 522 - 0 522 69035 40 8 1 32 1 0 5 1 2 89 0 1 91 1 0 222 1 0 19 3 7 13 chain 18006 chr3 198022430 + 86444177 86444512 THE1B 368 + 0 340 132843 111 0 3 6 2 0 49 76 81 56 7 6 28 chain 20928 chr3 198022430 + 86452320 86452555 L1PA4 6152 - 1 237 124182 149 0 1 86 chain 4638 chr3 198022430 + 86462022 86462166 L1MB8 1703 + 1437 1592 199210 29 66 77 49 chain 24995 chr3 198022430 + 86474935 86475286 THE1B 368 - 2 367 104821 73 1 0 96 1 3 25 8 6 98 6 21 43 chain 4565 chr3 198022430 + 86485579 86485727 L1MB7 1623 - 132 256 200048 12 5 4 22 56 35 40 2 0 11 chain 120713 chr3 198022430 + 86494663 86496351 HERVL-int 5654 + 2 1650 30788 226 1 2 10 0 35 663 109 24 31 10 18 58 1 0 4 14 15 400 0 1 161 chain 40305 chr3 198022430 + 86501470 86502009 L1PA8 5853 - 0 532 68869 68 0 1 23 2 1 19 2 1 52 1 0 9 5 4 67 2 0 44 1 0 49 1 0 194 chain 8952 chr3 198022430 + 86522069 86522182 L1PA8 5853 - 0 112 165862 93 1 0 19 chain 37484 chr3 198022430 + 86523970 86524404 L1PA6 6164 + 5719 6162 72836 387 0 9 47 chain 25293 chr3 198022430 + 86535408 86535694 L1PA3long 6157 - 0 286 103258 286 chain 49683 chr3 198022430 + 86537723 86538403 L1PA8 5853 - 0 669 59246 43 0 4 46 1 0 18 1 0 54 5 4 5 1 0 71 2 0 44 1 0 110 13 3 12 0 1 5 1 0 46 0 2 201 chain 10528 chr3 198022430 + 86553465 86553616 L1PA8 5853 + 5700 5841 158138 23 0 1 18 1 0 18 11 1 80 chain 272067 chr3 198022430 + 86588847 86592750 HERVH-int 3825 - 0 3825 15074 778 5 5 27 1 0 40 166 1 556 12 13 310 4 9 138 0 1 104 58 51 107 40 7 248 9 0 204 15 0 96 0 1 349 60 0 29 30 229 5 0 2 40 14 18 37 11 10 38 1 0 4 0 1 35 1 0 252 0 1 79 chain 24179 chr3 198022430 + 86610764 86611100 L1PA8 5853 - 0 328 109324 93 1 0 13 4 3 53 16 13 69 2 0 47 1 0 37 chain 214210 chr3 198022430 + 86631548 86634576 L1P2 5180 + 1731 4444 18213 124 2 1 6 0 1 272 0 1 183 12 0 66 2 1 161 314 0 9 0 1 92 1 2 508 0 1 23 1 0 32 5 2 126 11 20 158 0 1 50 5 0 304 0 2 291 0 5 270 chain 3294 chr3 198022430 + 86651185 86651431 MER4D 903 - 20 264 219090 12 1 0 13 9 10 15 93 89 29 60 62 14 chain 114951 chr3 198022430 + 86687012 86688510 L1PA10 4194 - 51 1557 32808 27 3 0 86 4 7 540 1 0 147 0 2 204 5 0 57 11 22 168 1 2 244 chain 54764 chr3 198022430 + 86688524 86689208 L1PA10 4194 + 1907 2610 55864 271 0 13 124 2 8 287 chain 22223 chr3 198022430 + 86737702 86737990 L1MA1 4479 + 228 517 119247 34 0 2 15 2 0 73 8 9 156 chain 47052 chr3 198022430 + 86740711 86741399 LTR30 714 - 10 714 61162 11 2 1 31 35 37 60 31 30 26 1 2 248 0 5 216 0 10 27 chain 34928 chr3 198022430 + 86743911 86744795 HERV30-int 1034 - 275 881 76298 24 38 0 46 192 64 33 2 0 6 12 9 15 34 0 27 29 14 89 1 0 78 12 0 39 14 9 45 33 0 61 1 0 40 6 0 7 chain 52567 chr3 198022430 + 86745479 86746173 LTR30 714 - 10 714 57256 13 1 0 53 13 14 78 13 12 246 0 6 24 0 5 253 chain 503456 chr3 198022430 + 86752453 86758650 L1PA6 6164 - 2 6164 6642 125 0 6 20 0 1 630 0 4 61 1 0 463 12 5 445 0 2 221 33 0 740 4 5 190 0 4 50 0 1 11 11 8 574 23 14 220 0 1 35 0 1 32 1 0 366 0 1 672 1 0 458 1 0 214 1 0 4 12 11 290 0 1 76 1 0 4 6 7 189 chain 90984 chr3 198022430 + 86779832 86781142 LTR12C 1709 - 0 1709 39299 84 4 3 82 1 0 312 27 20 15 0 207 119 0 118 231 0 17 28 10 9 47 0 4 32 0 43 42 1 6 9 76 91 190 chain 13649 chr3 198022430 + 86781692 86782212 LTR12D 1347 - 249 910 145787 16 1 0 30 175 325 16 0 17 20 22 63 43 2 33 54 97 0 44 chain 3171 chr3 198022430 + 86782225 86782282 LTR12D 1347 - 654 711 195698 57 chain 1930 chr3 198022430 + 86782285 86782372 LTR12D 1347 - 673 760 162340 87 chain 45633 chr3 198022430 + 86790437 86790946 L1PA3long 6157 - 0 509 62370 509 chain 114789 chr3 198022430 + 86806560 86807991 LTR12C 1709 + 0 1709 32849 288 4 0 85 6 2 153 15 17 106 0 278 183 1 0 5 3 1 97 9 13 173 0 1 108 1 5 194 chain 21439 chr3 198022430 + 86811962 86812335 THE1C 375 - 2 374 122377 23 1 0 119 59 52 88 20 21 17 0 6 46 chain 92609 chr3 198022430 + 86870816 86871889 MER11C 1089 - 16 1089 38783 1073 chain 463506 chr3 198022430 + 86920377 86926203 L1PA7 6471 - 3 6468 8271 10 3 0 135 28 46 422 1 0 99 0 2 51 2 1 73 0 6 263 0 1 404 1 0 270 1 2 56 1 0 45 0 1 7 1 0 73 0 2 51 0 1 835 0 1 27 1 3 371 0 35 529 6 5 119 0 2 269 0 5 50 0 1 313 0 2 7 1 0 5 1 0 428 0 1 7 0 1 253 6 5 179 4 5 52 7 2 269 9 582 81 chain 7552 chr3 198022430 + 86926421 86926512 L1PA6 6164 + 6070 6161 173848 91 chain 19986 chr3 198022430 + 86934161 86934415 L1P5 443 - 6 260 127184 254 chain 3476 chr3 198022430 + 86934433 86934476 L1PB1 5432 + 5353 5395 215712 38 1 0 4 chain 25982 chr3 198022430 + 86935730 86936094 L1PA8 5853 + 5478 5848 100085 86 1 0 42 7 6 29 0 3 34 2 1 11 1 0 50 2 1 19 1 0 52 0 9 27 chain 3687 chr3 198022430 + 86958966 86959054 MER121 330 - 162 247 212141 41 23 22 17 2 0 5 chain 8321 chr3 198022430 + 86983656 86983760 MLT2A2 560 - 454 560 169279 31 0 1 67 0 1 6 chain 34428 chr3 198022430 + 86983760 86984196 HERVL-int 5654 - 0 438 77021 53 0 1 114 4 5 265 chain 6136 chr3 198022430 + 86997668 86997736 L1PA3long 6157 + 6088 6156 184122 68 chain 23301 chr3 198022430 + 87024976 87025275 AluSq2 311 + 4 295 114195 24 7 0 91 3 1 13 0 1 161 chain 3035 chr3 198022430 + 87061419 87061456 L1MC1 2226 - 896 933 224288 37 chain 527953 chr3 198022430 + 87066264 87072371 L1PA4 6152 + 0 6144 4408 616 0 7 613 2 0 354 3 0 12 0 1 238 0 4 467 1 2 16 4 3 223 0 1 67 1 12 467 0 6 184 0 9 467 1 0 585 0 4 1026 0 1 432 1 2 79 1 0 105 1 0 141 chain 11020 chr3 198022430 + 87093028 87093162 MER107 203 - 58 200 156128 103 0 8 31 chain 21777 chr3 198022430 + 87128426 87128669 AluYb8 318 + 73 314 121110 50 2 0 191 chain 4427 chr3 198022430 + 87134288 87134469 MLT1D 503 + 413 484 201618 10 1 0 4 111 0 32 0 2 23 chain 2702 chr3 198022430 + 87141039 87141068 Cheshire 1285 + 484 513 230219 29 chain 536447 chr3 198022430 + 87141400 87147541 L1PA4 6152 - 0 6152 3385 834 10 14 143 0 1 1315 0 1 75 1 0 34 0 1 314 1 2 211 1 0 35 0 1 276 0 1 522 0 1 1126 1 2 877 0 1 365 chain 22547 chr3 198022430 + 87148117 87148393 AluY 311 + 29 305 117815 14 2 1 88 0 1 172 chain 3822 chr3 198022430 + 87154776 87154822 L1ME1 1623 + 1223 1270 210052 39 0 1 7 chain 30457 chr3 198022430 + 87180470 87180981 L1PA15 4387 - 32 532 83522 26 6 4 10 3 1 39 14 11 9 0 1 37 1 0 32 1 0 37 19 18 26 3 4 167 1 0 39 5 3 36 chain 42357 chr3 198022430 + 87180981 87181526 MLT2A2 560 - 0 559 66208 6 0 4 44 0 1 92 0 11 333 3 1 67 chain 14674 chr3 198022430 + 87190252 87190578 MER61A 341 + 0 341 142349 48 44 59 47 40 42 24 1 0 74 18 17 30 chain 262689 chr3 198022430 + 87191269 87194944 MER61-int 3695 + 1 3682 15556 27 8 6 16 4 3 25 0 4 27 1 6 155 11 10 46 9 6 52 0 10 16 1 2 61 1 0 64 7 6 106 6 5 59 0 3 231 2 0 6 0 1 52 0 7 11 5 0 76 0 1 25 0 1 88 0 3 164 0 1 12 1 5 24 0 1 16 8 9 91 2 0 159 0 1 89 0 1 61 0 1 270 10 9 51 12 14 223 0 1 193 13 1 117 34 33 88 13 12 33 1 2 91 8 7 153 7 0 193 1 0 10 2 0 73 3 5 6 1 0 244 chain 12848 chr3 198022430 + 87196596 87196925 MER51A 677 + 0 189 148857 30 12 13 97 110 0 37 31 0 12 chain 22874 chr3 198022430 + 87206370 87206742 MLT2A1 477 + 0 382 116216 73 0 9 32 0 1 42 0 3 10 4 1 10 0 1 56 66 65 79 chain 3331 chr3 198022430 + 87234701 87234739 Tigger1 2417 - 2327 2365 218390 38 chain 27001 chr3 198022430 + 87269400 87269763 THE1B 368 - 0 368 96281 49 5 13 97 11 9 32 1 0 168 chain 21678 chr3 198022430 + 87273249 87273541 L1PA8 5853 - 0 286 121474 93 1 0 19 2 1 52 1 0 9 5 4 67 2 0 41 chain 5796 chr3 198022430 + 87287391 87287519 L1MB5 1630 - 16 138 187180 13 6 5 23 29 24 57 chain 3756 chr3 198022430 + 87290683 87291012 L1ME1 1623 - 50 354 211017 23 265 240 41 chain 11483 chr3 198022430 + 87306540 87306798 THE1C 375 - 91 375 154362 35 52 64 4 0 1 36 11 15 11 26 35 83 chain 12736 chr3 198022430 + 87314736 87315020 MER2 342 + 14 316 149305 27 4 0 6 72 88 74 7 12 74 2 3 18 chain 37706 chr3 198022430 + 87329329 87329807 L1PA7 6471 + 5991 6466 72546 192 1 0 125 7 8 143 3 0 7 chain 6005 chr3 198022430 + 87343480 87343554 L1PB1 5432 - 855 929 185196 74 chain 55024 chr3 198022430 + 87343558 87344524 L1PB1 5432 + 4566 5413 55694 60 3 0 118 10 11 219 1 0 56 0 1 72 97 11 24 1 0 6 19 14 9 2 0 52 1 0 18 1 0 39 72 56 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 31061 chr3 198022430 + 87352784 87353218 L1PA8 5853 + 5435 5853 82412 123 0 2 4 1 0 44 2 0 71 11 9 21 11 0 31 2 1 19 2 1 92 chain 35150 chr3 198022430 + 87354025 87354464 L1PA7 6471 - 5 445 75995 7 2 0 145 6 7 134 0 2 145 chain 3925 chr3 198022430 + 87363279 87363372 MER63A 208 - 0 99 208496 16 32 38 45 chain 15232 chr3 198022430 + 87386530 87386704 L1PA4 6152 + 5182 5356 140685 174 chain 6350 chr3 198022430 + 87386704 87386775 L1PA4 6152 + 5359 5430 182374 71 chain 63147 chr3 198022430 + 87386776 87387486 L1PA4 6152 + 5430 6141 51382 608 0 1 102 chain 534495 chr3 198022430 + 87389676 87395654 L1PA3long 6157 - 1 6147 3651 724 1 0 643 0 1 1611 0 1 669 0 1 975 0 36 591 0 128 490 1 2 131 0 1 142 chain 3299 chr3 198022430 + 87424920 87424962 LTR12C 1709 + 773 815 218993 42 chain 4878 chr3 198022430 + 87424998 87425059 LTR12C 1709 + 654 715 196514 61 chain 29015 chr3 198022430 + 87451682 87452021 L1PA4 6152 - 4462 4802 88921 248 0 1 91 chain 392204 chr3 198022430 + 87452027 87456443 L1PA4 6152 + 1703 6139 10389 7 0 1 1575 0 1 968 0 18 1866 chain 40860 chr3 198022430 + 87482580 87483073 LTR10F 562 + 0 553 68081 177 1 60 267 0 1 48 chain 19087 chr3 198022430 + 87514467 87514676 AluYf4 310 + 95 301 129857 37 3 0 169 chain 126135 chr3 198022430 + 87530592 87531970 L1PA2 6032 + 4656 6032 29055 1370 2 0 6 chain 22572 chr3 198022430 + 87534619 87534864 MER11D 897 + 0 245 117713 245 chain 37230 chr3 198022430 + 87553665 87554084 L1PA3long 6157 - 0 423 73197 149 0 1 137 0 3 133 chain 39462 chr3 198022430 + 87558352 87558896 LTR19B 566 - 0 566 70068 32 0 1 4 1 0 15 3 0 16 0 5 18 4 21 20 0 4 128 1 0 139 0 2 8 3 0 82 1 2 19 0 1 31 1 0 18 chain 123509 chr3 198022430 + 87567955 87569503 THE1A-int 1579 + 0 1579 29877 510 0 1 199 0 7 7 17 10 438 1 0 4 5 6 295 0 30 72 chain 24078 chr3 198022430 + 87569507 87569859 THE1A 353 + 4 353 109882 107 26 25 66 1 0 7 6 5 139 chain 24864 chr3 198022430 + 87592529 87593024 LTR19A 502 + 0 502 105552 34 5 4 115 11 0 30 2 76 15 51 13 72 2 0 71 11 9 13 42 29 21 chain 49761 chr3 198022430 + 87597092 87597887 MER4E 760 - 0 760 59186 226 8 7 53 18 19 19 1 0 64 1 3 78 53 17 30 5 6 67 3 1 8 0 1 57 0 1 73 7 6 24 chain 30524 chr3 198022430 + 87607017 87607632 L1PA15 4387 - 35 616 83378 22 78 68 44 4 2 8 4 0 11 13 12 55 4 8 18 1 0 88 5 6 32 17 0 46 1 0 40 3 1 21 0 1 41 17 15 42 chain 10073 chr3 198022430 + 87607680 87607960 LTR49 580 - 309 580 160206 75 150 141 55 chain 211708 chr3 198022430 + 87619881 87622884 HERVH-int 3825 + 961 3825 18380 273 43 13 184 9 0 257 0 27 66 45 39 133 1 14 39 0 4 76 4 9 474 15 42 364 165 0 40 1 0 166 13 8 54 23 22 33 2 0 175 0 4 348 chain 95440 chr3 198022430 + 87636481 87637582 L1PA4 6152 + 4659 5790 37975 957 0 30 144 chain 30109 chr3 198022430 + 87637597 87637942 L1PA4 6152 + 5796 6141 84457 345 chain 115990 chr3 198022430 + 87645715 87647268 THE1A-int 1579 - 11 1579 32462 462 13 6 6 0 3 39 0 1 90 12 24 50 1 4 375 6 7 174 13 14 231 0 1 81 chain 11653 chr3 198022430 + 87681096 87681248 L1PA8 5853 + 5703 5853 153679 37 2 1 19 1 0 93 chain 29426 chr3 198022430 + 87686125 87686432 AluYb8 318 + 0 307 86954 307 chain 511821 chr3 198022430 + 87697041 87703476 L1PA7 6471 - 12 6465 5998 50 10 4 20 1 0 72 1 2 693 0 4 550 4 7 96 9 6 152 0 1 125 0 8 35 0 1 866 6 7 32 4 5 122 0 2 204 0 4 23 1 0 673 7 4 44 7 6 476 0 5 243 0 1 559 0 1 565 1 0 326 6 7 44 17 2 120 8 7 18 10 25 126 0 1 109 chain 127313 chr3 198022430 + 87728067 87729600 LTR12C 1709 + 2 1709 28738 39 0 1 221 1 0 46 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 446 0 14 21 chain 3325 chr3 198022430 + 87752526 87752562 tRNA-Arg-AGG 67 + 2 38 218489 36 chain 165176 chr3 198022430 + 87757064 87758991 L1PA6 6164 + 4237 6157 22632 247 2 0 165 21 16 1492 chain 4661 chr3 198022430 + 87766871 87766970 L1M1 2793 + 1621 1723 198945 48 24 29 5 2 0 20 chain 41459 chr3 198022430 + 87776959 87777512 MER4B 649 + 58 609 67338 89 0 1 35 10 8 363 11 10 45 chain 381224 chr3 198022430 + 87783189 87788077 Harlequin-int 5206 - 1 5068 10721 23 8 3 103 24 23 109 40 41 201 15 27 101 54 54 297 1 0 4 68 69 283 0 3 165 0 1 16 1 0 375 0 1 2096 0 3 654 4 6 36 0 164 44 1 0 165 chain 6983 chr3 198022430 + 87791266 87791356 L1MB3 1562 + 1216 1306 177589 90 chain 23211 chr3 198022430 + 87799154 87799442 AluY 311 + 30 307 114635 88 12 0 14 0 1 174 chain 52977 chr3 198022430 + 87825858 87826584 L1PB1 5432 - 4025 4757 57030 5 2 0 7 1 0 73 1 2 25 10 19 166 6 5 430 chain 87843 chr3 198022430 + 87826585 87827634 L1PA7 6471 + 5398 6461 40428 138 0 10 75 1 0 97 0 3 24 0 1 89 0 1 558 2 0 5 5 7 55 chain 23258 chr3 198022430 + 87850504 87850949 MER4A1 472 - 0 469 114402 62 12 14 133 76 79 43 0 15 36 5 0 42 0 7 11 13 15 12 chain 28522 chr3 198022430 + 87869325 87869624 AluYa5 310 - 10 309 91093 299 chain 14709 chr3 198022430 + 87876300 87876480 L1PA8A 6298 - 8 188 142244 180 chain 132626 chr3 198022430 + 87892686 87894144 L1PA3long 6157 - 5 1461 27492 137 0 1 6 0 1 1230 4 0 81 chain 2293 chr3 198022430 + 87894146 87894862 L1PA3long 6157 + 3908 4624 30607 716 chain 177704 chr3 198022430 + 87897787 87899766 L1PA4 6152 + 4169 6151 21190 1131 0 1 737 0 1 92 0 1 19 chain 7742 chr3 198022430 + 87901738 87901824 L1PA4 6152 - 2 88 172648 86 chain 4289 chr3 198022430 + 87930676 87932015 L1PA3long 6157 + 4812 6157 30607 293 0 1 453 1 4 327 0 2 265 chain 470577 chr3 198022430 + 87932033 87937623 L1PA6 6164 + 554 6160 8016 13 1 0 156 1 5 516 24 0 55 0 4 567 0 1 81 16 0 9 0 10 50 7 6 10 0 1 295 0 1 19 0 2 144 0 1 74 0 6 377 2 1 231 0 1 75 0 3 1026 0 1 69 0 8 39 0 2 104 0 5 353 0 1 442 0 4 79 1 3 128 0 1 481 1 2 144 chain 6805 chr3 198022430 + 87943177 87943406 L1PB1 5432 - 5 196 178912 4 1 0 5 2 0 14 1 0 7 21 6 21 1 0 24 2 0 8 77 61 41 chain 28225 chr3 198022430 + 87951750 87952058 L1PA3long 6157 - 0 308 92210 308 chain 90075 chr3 198022430 + 87952058 87953043 L1PA3long 6157 + 4779 5765 39624 518 0 1 467 chain 398569 chr3 198022430 + 87964067 87969536 L1PB1 5432 + 24 5418 10150 107 3 0 6 4 0 264 1 0 142 2 1 64 1 0 4 0 1 4 1 0 49 10 7 26 0 4 544 5 9 146 20 0 55 0 1 172 6 12 9 1 0 5 0 1 189 0 1 5 0 3 7 0 8 130 4 5 214 22 23 133 0 4 113 6 0 328 19 14 8 2 0 101 2 1 136 0 1 28 25 26 102 1 0 14 1 0 105 0 1 130 4 0 200 0 1 39 3 5 45 0 1 32 13 11 135 1 0 191 0 2 164 1 2 230 0 1 4 1 0 79 0 2 122 0 1 350 47 13 21 1 0 9 29 22 51 6 5 11 1 0 44 1 0 16 2 0 6 16 6 17 11 8 13 2 0 24 1 0 21 1 0 13 1 0 14 chain 138378 chr3 198022430 + 87980201 87981761 L1PA3long 6157 - 0 1566 26419 5 3 0 50 0 4 612 0 1 171 0 4 719 chain 107608 chr3 198022430 + 87981765 87982956 L1PA3long 6157 + 3406 4597 34826 1191 chain 86643 chr3 198022430 + 87988348 87989427 L1P3 4156 - 17 1102 40907 24 2 1 7 2 0 102 1 0 127 0 1 107 0 1 95 11 20 96 6 7 51 1 0 426 1 0 20 chain 293731 chr3 198022430 + 87989973 87993354 HERV17-int 4347 - 952 4335 13784 248 1 0 23 0 2 68 3 0 458 0 1 328 0 3 796 3 0 119 0 3 345 4 0 246 0 1 50 0 8 557 1 0 27 3 0 5 6 7 22 1 0 51 1 0 15 chain 44262 chr3 198022430 + 87995002 87995529 LTR17 781 - 0 526 63866 13 1 0 361 0 1 79 1 0 72 chain 8733 chr3 198022430 + 88000059 88000188 MER65D 500 - 368 500 167011 21 1 0 14 11 15 82 chain 27879 chr3 198022430 + 88017027 88017365 THE1B-int 1605 + 29 370 93424 78 0 3 260 chain 46418 chr3 198022430 + 88038898 88039527 PABL_A 660 - 0 660 61665 120 0 22 239 0 1 19 0 10 32 1 2 48 7 8 32 1 0 60 11 7 5 0 1 54 chain 115483 chr3 198022430 + 88064657 88066037 LTR12C 1709 + 0 1709 32614 265 1 2 224 0 1 158 0 278 143 0 47 106 0 4 330 1 0 63 5 4 84 chain 25081 chr3 198022430 + 88070944 88071315 MER4A1 472 - 77 472 104402 119 26 46 58 1 2 36 1 0 90 0 1 22 4 7 14 chain 28778 chr3 198022430 + 88099497 88099802 AluYa8 305 - 0 305 89987 305 chain 5571 chr3 198022430 + 88131972 88132033 MLT1B 390 - 44 105 189364 61 chain 9689 chr3 198022430 + 88139908 88140126 MER30 238 - 0 238 162152 30 0 1 14 3 0 42 16 42 10 15 4 49 25 32 14 chain 309748 chr3 198022430 + 88146526 88150118 L1PA5 6144 + 2523 6142 13012 23 0 1 628 0 2 19 1 0 5 0 1 742 4 0 130 0 1 266 0 4 125 1 6 215 0 1 28 0 1 127 0 1 524 0 2 290 0 13 127 0 1 95 1 0 241 chain 65235 chr3 198022430 + 88167964 88168703 L1PA3long 6157 + 5426 6157 50450 577 7 0 63 4 5 81 2 0 5 chain 11090 chr3 198022430 + 88170107 88170250 L1PA8 5853 + 5712 5853 155842 31 1 0 17 1 0 93 chain 37563 chr3 198022430 + 88223974 88224419 L1PA7 6471 + 6019 6466 72734 211 0 1 53 0 1 181 chain 521403 chr3 198022430 + 88231102 88237245 L1PA6 6164 + 0 6162 5016 285 0 2 280 1 0 333 3 7 24 0 2 104 0 1 216 2 0 703 1 0 204 0 1 172 1 0 240 0 6 610 2 1 52 0 1 459 1 0 381 0 1 187 1 2 83 0 8 579 0 4 1052 9 6 150 2 0 6 chain 32528 chr3 198022430 + 88240207 88240655 MER4A1 472 - 0 472 79980 24 0 1 161 44 65 119 0 2 100 chain 26293 chr3 198022430 + 88294598 88294965 THE1B 368 + 0 368 98852 47 0 9 8 14 6 47 1 0 55 3 1 138 0 3 54 chain 99423 chr3 198022430 + 88309078 88310198 L1PA5 6144 - 12 1136 36918 831 0 4 289 chain 56338 chr3 198022430 + 88334480 88335101 L1PA2 6032 - 0 624 54941 15 0 3 606 chain 204025 chr3 198022430 + 88342822 88345367 L1PA8A 6298 - 6 2557 18924 410 0 2 65 5 4 119 11 12 190 2 1 57 0 1 364 0 4 416 4 0 122 0 1 157 0 6 481 13 7 17 0 1 53 0 1 5 0 1 54 chain 95617 chr3 198022430 + 88352392 88353485 SVA_A 1864 + 18 1864 37927 208 0 11 262 1 743 622 chain 3039 chr3 198022430 + 88414025 88414061 MIR 256 - 3 39 224210 36 chain 15647 chr3 198022430 + 88415906 88416267 THE1B 368 - 0 368 139446 18 3 0 5 0 3 8 29 28 64 66 73 34 29 30 105 chain 28809 chr3 198022430 + 88445251 88445554 AluYf4 310 - 7 310 89847 303 chain 8299 chr3 198022430 + 88480340 88480457 HY1 111 + 0 111 169402 80 5 0 3 2 0 20 0 1 7 chain 13507 chr3 198022430 + 88480468 88480753 L1PB1 5432 + 5168 5427 146335 52 2 1 16 1 0 43 1 0 14 30 17 16 3 1 4 1 0 11 7 5 21 2 1 21 1 0 13 3 2 14 2 0 7 chain 72172 chr3 198022430 + 88512647 88513474 L1PA4 6152 + 5336 6152 47393 471 21 10 335 chain 36970 chr3 198022430 + 88517795 88518284 MLT2A2 560 + 0 538 73553 78 0 25 224 6 17 56 0 11 79 0 1 13 0 1 33 chain 52564 chr3 198022430 + 88519937 88520678 L1PA8 5853 + 5121 5840 57260 116 1 0 320 8 7 46 2 0 72 29 13 45 2 1 19 2 1 79 chain 50762 chr3 198022430 + 88522797 88523439 THE1B-int 1605 + 14 683 58456 296 2 4 112 0 25 232 chain 13707 chr3 198022430 + 88523450 88523635 THE1-int 844 - 458 639 145575 162 9 5 14 chain 24885 chr3 198022430 + 88538074 88538383 L1PA7 6471 + 6153 6468 105437 136 4 10 169 chain 135383 chr3 198022430 + 88543440 88545393 L1PA5 6144 - 9 1729 26943 150 0 1 314 240 0 26 0 1 341 0 1 90 0 1 229 5 6 11 8 9 13 0 2 152 2 0 7 0 2 157 1 0 207 chain 3831 chr3 198022430 + 88543913 88543965 L1PA5 6144 - 12 65 209902 32 1 2 19 chain 15140 chr3 198022430 + 88543965 88544139 L1PA5 6144 - 69 243 140945 174 chain 29042 chr3 198022430 + 88545397 88545772 L1P3 4156 + 3766 4139 88792 146 0 1 50 1 0 132 0 1 11 9 6 26 chain 548052 chr3 198022430 + 88552251 88558272 L1PA2 6032 - 6 6032 1701 920 0 1 4 1 0 408 0 2 785 0 3 852 2 3 2792 5 4 252 chain 47968 chr3 198022430 + 88561773 88562818 L1PA7 6471 + 5482 6461 60510 18 224 238 46 151 75 117 1 12 97 37 19 75 0 3 279 chain 13331 chr3 198022430 + 88569722 88569994 L1PB1 5432 - 15 264 146973 13 1 0 13 1 0 21 1 0 24 2 0 14 1 0 9 21 10 13 2 0 5 1 0 15 1 0 43 19 17 52 chain 24349 chr3 198022430 + 88592967 88593321 THE1B 368 + 0 368 108381 44 8 24 39 13 14 51 2 1 19 2 0 176 chain 17681 chr3 198022430 + 88599939 88600152 L1PB1 5432 + 3725 3938 133032 213 chain 78145 chr3 198022430 + 88600152 88601007 L1PA3long 6157 - 1497 2352 44308 855 chain 136413 chr3 198022430 + 88601007 88602523 L1PA3long 6157 + 4640 6157 26763 1457 0 1 59 chain 168451 chr3 198022430 + 88604874 88606786 L1PA4 6152 - 0 1918 22226 6 0 5 764 1 2 1141 chain 251116 chr3 198022430 + 88606789 88610447 L1PA4 6152 + 1468 6143 16167 852 13 12 250 0 2 180 0 1 306 3 0 112 1 0 506 1 0 188 6 82 169 696 1639 120 0 1 255 chain 10998 chr3 198022430 + 88657367 88657512 L1PA7 6471 - 1 144 156213 12 8 6 125 chain 411683 chr3 198022430 + 88684562 88689867 L1PA8A 6298 - 6 5305 9754 40 4 0 193 0 1 568 2 1 16 3 4 529 1 2 351 0 1 82 1 0 25 0 2 82 0 2 6 33 31 146 0 1 511 2 0 228 0 2 12 0 4 5 1 0 156 0 1 101 0 1 314 0 1 367 1 2 218 33 1 459 0 2 42 2 3 200 4 25 326 1 0 51 8 9 23 1 0 19 0 6 10 11 0 117 chain 16203 chr3 198022430 + 88696606 88696791 L1PA5 6144 - 0 185 137742 185 chain 261462 chr3 198022430 + 88703799 88706700 L1PA3long 6157 - 0 2899 15618 643 1 0 275 5 6 4 1 0 588 1 0 1383 chain 4499 chr3 198022430 + 88723288 88723429 MER57A1 433 - 196 336 200800 45 49 0 8 14 62 25 chain 31360 chr3 198022430 + 88763572 88764019 L1MA1 4479 + 230 678 81886 50 2 0 77 32 31 40 0 4 246 chain 78643 chr3 198022430 + 88770547 88771410 L1PA3long 6157 - 908 1771 44209 863 chain 79036 chr3 198022430 + 88771410 88772315 L1PA3long 6157 + 5258 6157 44038 26 1 0 399 0 1 205 0 1 113 7 0 154 chain 5359 chr3 198022430 + 88778534 88778603 MER58A 224 + 49 118 191450 69 chain 14041 chr3 198022430 + 88784581 88784961 L1PB1 5432 + 5096 5427 144418 7 5 0 14 7 2 18 1 0 10 1 0 9 22 11 53 2 1 10 6 5 40 5 4 10 57 41 17 2 0 22 1 0 21 1 0 13 1 0 18 2 0 5 chain 54812 chr3 198022430 + 88785008 88785626 L1PA4 6152 - 6 624 55831 618 chain 37627 chr3 198022430 + 88785626 88786047 L1PA4 6152 + 5143 5561 72652 410 3 0 8 chain 28991 chr3 198022430 + 88790495 88790807 AluYa5 310 - 0 309 89030 184 3 0 125 chain 502622 chr3 198022430 + 88796060 88802292 L1PA6 6164 + 0 6162 6687 147 7 0 76 13 15 260 0 3 16 0 2 48 1 0 194 7 8 81 1 10 586 1 0 634 3 6 1082 0 2 521 36 5 6 7 0 534 0 4 132 0 2 263 7 6 698 51 8 139 1 0 360 6 0 314 chain 248159 chr3 198022430 + 88817374 88820254 L1P2 5180 - 875 3757 16356 373 5 6 236 3 0 1371 2 0 74 0 7 506 1 0 309 chain 86295 chr3 198022430 + 88820259 88821269 L1PA4 6152 + 5138 6151 41046 336 0 1 156 0 1 22 0 1 496 chain 15665 chr3 198022430 + 88836560 88836755 MLT2A2 560 - 0 206 139383 147 0 11 48 chain 4916 chr3 198022430 + 88839074 88839164 L1MA2 4263 - 163 246 196093 34 15 8 41 chain 16491 chr3 198022430 + 88876386 88876580 L1PA6 6164 - 2 193 136955 9 2 0 6 1 0 176 chain 397352 chr3 198022430 + 88884240 88889768 L1PB1 5432 - 8 5368 10188 4 1 0 16 1 0 13 1 0 22 1 0 25 22 17 19 26 14 13 1 0 44 1 0 16 2 1 53 27 20 33 1 0 9 150 1 121 0 1 63 0 1 5 5 4 54 10 15 219 1 0 456 0 1 442 1 0 155 0 1 270 7 5 84 0 1 198 1 0 10 1 0 18 2 0 136 3 5 142 0 3 1014 0 8 69 0 5 180 6 5 10 7 0 8 1 0 105 0 1 94 1 2 725 1 0 60 1 2 261 0 1 80 chain 63066 chr3 198022430 + 88903621 88904322 L1PA4 6152 - 0 699 51422 254 2 0 445 chain 13068 chr3 198022430 + 88910310 88910592 L1PB1 5432 + 5162 5419 147958 5 2 0 53 2 1 11 9 8 38 3 2 21 23 11 15 11 8 10 2 0 25 1 0 21 1 0 13 1 0 15 chain 550979 chr3 198022430 + 88918983 88925013 L1PA2 6032 + 0 6028 1316 1035 0 2 4984 4 0 7 chain 18917 chr3 198022430 + 88931545 88931800 L1PA7 6471 + 6205 6461 130319 102 13 14 140 chain 26066 chr3 198022430 + 88932273 88932631 L1PA8 5853 + 5501 5853 99773 63 1 0 44 3 1 68 3 2 9 1 2 5 2 0 65 2 1 92 chain 26923 chr3 198022430 + 88935017 88935331 LTR17 781 - 455 781 96536 141 0 3 54 0 9 119 chain 35852 chr3 198022430 + 88935653 88936153 LTR17 781 - 49 526 75056 320 26 12 72 0 1 29 23 13 30 chain 92129 chr3 198022430 + 88939507 88940554 L1PA4 6152 - 2838 3890 38924 111 2 1 120 0 6 814 chain 243362 chr3 198022430 + 88940554 88943365 L1PA4 6152 + 3311 6151 16598 126 1 4 124 4 0 115 1 2 603 0 5 59 2 6 627 0 1 37 0 8 785 3 15 4 1 0 319 chain 8515 chr3 198022430 + 88943875 88944076 L1PB1 5432 - 10 191 168219 18 1 0 13 1 0 21 1 0 24 2 0 9 59 45 11 1 0 40 chain 2922 chr3 198022430 + 88944913 88944947 MER45C 884 + 722 756 226653 34 chain 208005 chr3 198022430 + 88951353 88954008 L1PA8 5853 - 6 2677 18638 85 12 11 8 1 0 50 10 0 14 9 8 63 2 0 44 1 0 198 0 1 78 1 2 26 0 7 165 7 4 72 0 2 18 0 4 241 0 4 7 10 19 655 0 5 27 0 1 545 0 1 306 chain 14475 chr3 198022430 + 88954499 88954700 L1PB 1623 - 177 376 142962 136 3 1 7 1 0 16 0 1 38 chain 35867 chr3 198022430 + 88988717 88989143 L1PA7 6471 + 6027 6461 75045 242 0 8 184 chain 29791 chr3 198022430 + 89021971 89022313 L1PA5 6144 + 5808 6143 85494 327 7 0 8 chain 9443 chr3 198022430 + 89058818 89058938 L1PA7 6471 + 6348 6470 163345 88 0 2 32 chain 81674 chr3 198022430 + 89067590 89068659 L1PA7 6471 + 5416 6459 42899 33 0 1 172 0 2 20 28 1 53 0 2 158 0 1 128 1 0 10 0 1 300 5 1 130 6 5 25 chain 7323 chr3 198022430 + 89078346 89078445 MER30 238 + 141 238 175279 54 2 0 43 chain 176515 chr3 198022430 + 89083674 89085734 L1P1 4361 + 4 2087 21303 335 0 2 408 2 0 39 0 17 1030 0 5 90 0 1 156 chain 46487 chr3 198022430 + 89085742 89086258 L1PA5 6144 + 5622 6138 61612 516 chain 169106 chr3 198022430 + 89117764 89119740 L1PA4 6152 - 0 1946 22160 6 0 5 567 0 12 260 0 1 123 50 1 407 0 1 563 chain 63504 chr3 198022430 + 89119740 89120485 L1PA4 6152 + 3389 4139 51158 221 0 8 66 4 0 245 0 1 209 chain 323366 chr3 198022430 + 89123149 89127217 L1PA7 6471 + 2352 6460 12464 132 2 1 156 1 0 183 0 1 173 1 2 96 0 4 228 6 12 105 0 4 26 0 1 202 4 7 248 1 0 4 0 1 70 0 1 5 8 7 220 0 1 660 7 26 542 0 1 112 0 2 36 1 0 585 6 6 178 8 8 62 chain 116228 chr3 198022430 + 89140764 89142087 L1PA5 6144 - 12 1338 32364 130 0 6 6 6 0 508 0 3 185 1 0 113 0 1 374 chain 17179 chr3 198022430 + 89147252 89147442 L1PA5 6144 - 21 212 135089 133 0 1 57 chain 39222 chr3 198022430 + 89183363 89183819 L1PA5 6144 - 0 450 70424 11 7 1 438 chain 33370 chr3 198022430 + 89196032 89196499 L1PA8 5853 + 5389 5853 78620 39 0 1 92 0 1 44 1 0 44 11 9 60 1 0 20 1 2 39 2 1 19 1 0 93 chain 2586 chr3 198022430 + 89240681 89240726 MLT1B 390 + 311 357 231850 11 4 5 30 chain 47411 chr3 198022430 + 89267308 89267843 L1PA4 6152 - 17 556 60894 227 0 5 9 1 0 298 chain 22678 chr3 198022430 + 89267843 89268098 L1PA4 6152 + 5353 5609 117173 25 0 1 230 chain 28428 chr3 198022430 + 89268847 89269151 AluYa5 310 - 0 304 91476 304 chain 18404 chr3 198022430 + 89285679 89285881 L1PA3long 6157 + 5945 6147 131774 202 chain 85581 chr3 198022430 + 89291914 89292909 L1PA4 6152 - 9 999 41313 874 0 14 9 19 0 93 chain 5994 chr3 198022430 + 89310968 89311047 MADE1 96 + 0 96 185296 35 0 17 44 chain 21291 chr3 198022430 + 89312130 89312421 L1PA7 6471 - 1 316 122900 149 1 8 15 4 5 33 6 22 83 chain 3289 chr3 198022430 + 89375870 89375907 MER2 342 - 286 323 219184 37 chain 18237 chr3 198022430 + 89387714 89387931 AluYk4 311 - 28 246 132243 152 1 2 64 chain 557099 chr3 198022430 + 89394765 89400790 L1PA2 6032 - 0 6029 601 354 1 0 703 1 2 737 0 4 4229 chain 62526 chr3 198022430 + 89404985 89405678 L1PA3long 6157 - 0 693 51666 693 chain 134878 chr3 198022430 + 89418315 89419817 L1PA3long 6157 + 4661 6157 27039 316 7 1 1179 chain 21069 chr3 198022430 + 89427156 89427417 L1PA7 6471 + 6204 6465 123665 261 chain 17771 chr3 198022430 + 89507648 89507870 L1PA8 5853 - 475 697 133508 222 chain 34796 chr3 198022430 + 89507870 89508344 L1PA8 5853 + 5385 5853 76486 135 0 1 42 1 0 45 2 0 71 1 0 6 29 28 30 1 0 19 1 0 91 chain 567658 chr3 198022430 + 89509975 89516006 L1HS 6032 - 0 6032 53 5959 0 1 72 chain 120350 chr3 198022430 + 89550526 89551950 L1PA8A 6298 + 4248 5672 30923 174 0 1 402 1 0 27 0 1 631 1 0 188 chain 17353 chr3 198022430 + 89580692 89580972 AluSz 310 + 8 288 134648 105 8 9 17 23 24 43 14 12 70 chain 11450 chr3 198022430 + 89590432 89590590 MLT2A1 477 + 279 425 154500 26 1 0 80 4 0 14 7 0 26 chain 7370 chr3 198022430 + 89631909 89632004 L1MB3 1562 - 173 267 174976 38 1 0 56 chain 16102 chr3 198022430 + 89653370 89653554 L1PA2 6032 - 382 583 138052 23 0 17 161 chain 34340 chr3 198022430 + 89653554 89653926 L1PA2 6032 + 5655 6027 77143 372 chain 26990 chr3 198022430 + 89679239 89679574 THE1A 353 + 0 341 96313 111 1 0 122 2 9 99 chain 123295 chr3 198022430 + 89679584 89681487 THE1A-int 1579 + 1 1574 29947 496 352 0 36 0 10 455 10 22 554 chain 5129 chr3 198022430 + 89748971 89749127 L1PBa 3878 + 104 211 193791 31 86 37 39 chain 74013 chr3 198022430 + 89757427 89758588 L1PB2 3958 + 2721 3816 46503 200 8 7 89 1 2 94 1 2 45 1 0 34 14 15 98 2 0 51 0 3 16 2 1 50 84 23 94 1 0 49 0 1 23 6 5 55 8 7 9 1 0 61 2 0 20 1 0 41 chain 8317 chr3 198022430 + 89775036 89775149 L1PA8 5853 + 5741 5853 169292 19 2 1 92 chain 22167 chr3 198022430 + 89795234 89795511 L1PA7 6471 - 88 365 119510 277 chain 532422 chr3 198022430 + 89796769 89802788 L1PA3long 6157 + 4 6156 3920 124 1 15 11 13 0 556 0 2 64 0 128 344 0 1 1933 0 1 1171 0 4 283 1 0 394 1 0 781 4 2 338 chain 21850 chr3 198022430 + 89804924 89805204 L1P3 4156 + 3658 3941 120816 100 2 5 178 chain 7439 chr3 198022430 + 89823260 89823377 THE1B 368 - 180 296 174523 16 1 0 38 11 0 8 0 11 43 chain 29313 chr3 198022430 + 89834674 89834985 AluYa5 310 - 0 310 87497 184 1 0 126 chain 520608 chr3 198022430 + 89880865 89887014 L1PA4 6152 + 1 6143 5095 13 7 8 99 10 9 643 1 0 1334 0 3 206 1 0 4 0 1 253 1 4 87 0 1 446 11 11 123 0 4 166 18 0 99 0 1 840 0 4 91 1 0 59 0 1 1567 4 0 65 chain 32533 chr3 198022430 + 89898140 89898522 L1PA5 6144 + 5752 6134 79967 382 chain 7846 chr3 198022430 + 89903083 89903192 AluSq10 312 - 13 115 172044 47 8 1 54 chain 87629 chr3 198022430 + 89906684 89907785 L1PA8 5853 + 4759 5853 40522 245 1 0 9 1 0 81 1 0 13 9 0 457 1 0 44 2 0 55 1 2 14 1 9 12 0 1 39 2 1 19 10 9 84 chain 556802 chr3 198022430 + 89918194 89924219 L1PA2 6032 - 0 6028 632 2413 0 1 498 0 1 1682 0 2 107 1 0 1324 chain 40587 chr3 198022430 + 89930136 89930605 L1P1 4361 + 1 470 68100 469 chain 71089 chr3 198022430 + 89930605 89931434 L1PA4 6152 + 5220 6055 47894 84 0 5 684 3 4 58 chain 7624 chr3 198022430 + 89931434 89931525 L1PA4 6152 + 6056 6143 173387 27 4 0 60 chain 257857 chr3 198022430 + 89931554 89934694 L1PA4 6152 - 2952 6123 15817 501 0 5 1322 0 20 59 0 1 258 3 1 134 1 2 55 0 4 17 22 22 32 0 1 184 0 1 5 1 0 335 43 44 168 chain 4605 chr3 198022430 + 89934706 89934764 L1PA4 6152 + 3192 3250 199571 58 chain 68659 chr3 198022430 + 89934764 89935570 L1PA4 6152 + 3253 4065 48957 421 13 19 372 chain 171728 chr3 198022430 + 89935570 89937519 L1PA4 6152 + 4066 6008 21854 545 0 1 53 0 1 14 0 1 342 14 3 791 0 1 190 chain 11001 chr3 198022430 + 89937519 89937649 L1PA4 6152 + 6009 6139 156199 130 chain 5765 chr3 198022430 + 89945557 89945630 Tigger3b 1229 - 111 184 187490 73 chain 302904 chr3 198022430 + 89945699 89949256 L1PA5 6144 - 6 3575 13284 156 7 10 657 17 22 765 1 2 40 1 4 175 2 1 949 0 1 186 1 0 11 1 2 588 chain 156440 chr3 198022430 + 89949267 89951135 L1PA5 6144 + 703 2581 23806 12 0 1 147 4 6 1048 0 4 392 1 0 108 4 8 152 chain 3416 chr3 198022430 + 89957335 89957372 tRNA-Thr-ACA 39 - 2 39 216848 37 chain 29989 chr3 198022430 + 89984988 89985305 AluYb8 318 + 0 317 84836 317 chain 533471 chr3 198022430 + 89988229 89994263 L1PA3long 6157 - 0 6157 3777 140 7 0 1382 1 0 1216 0 1 151 1 0 4 0 1 28 0 4 89 1 0 426 20 15 743 0 1 1050 1 129 521 0 1 100 1 2 82 0 1 70 chain 22287 chr3 198022430 + 89998195 89998632 L1PBb 2709 + 2182 2589 118961 126 7 3 11 7 9 90 22 10 38 0 3 16 84 65 36 chain 548571 chr3 198022430 + 90006983 90013005 L1PA2 6032 + 1 6032 1632 28 6 10 228 0 1 1317 0 1 397 0 3 1057 0 1 2634 1 0 354 chain 12516 chr3 198022430 + 90021102 90021283 L1PA16 3655 + 3409 3587 150176 27 0 1 102 6 5 34 3 0 9 chain 6620 chr3 198022430 + 90032010 90032145 L1M1 2793 - 1379 1520 180302 18 43 49 74 chain 30194 chr3 198022430 + 90033877 90034191 AluYb8 318 + 0 314 84211 314 chain 520218 chr3 198022430 + 90045124 90051256 L1PA4 6152 + 1 6152 5133 1283 0 1 1924 2 1 231 1 4 160 0 1 848 0 3 113 3 5 461 0 1 262 6 10 832 0 5 6 chain 27989 chr3 198022430 + 90054123 90054441 AluYg6 310 - 0 310 93038 38 8 0 272 chain 23578 chr3 198022430 + 90078084 90078374 AluSp 311 - 9 299 112696 290 chain 28076 chr3 198022430 + 90100052 90100346 AluYa5 310 - 16 310 92734 294 chain 25101 chr3 198022430 + 90120342 90120687 LTR7 482 + 0 477 104284 69 6 95 36 1 11 13 0 1 39 0 31 10 0 1 171 chain 103558 chr3 198022430 + 90120694 90122040 HERVH-int 3825 - 2380 3825 35846 12 0 1 124 0 1 5 3 36 351 0 1 135 1 0 22 0 1 58 45 2 19 7 7 14 1 0 6 0 109 6 1 0 201 2 1 333 chain 3824 chr3 198022430 + 90122059 90122123 LTR7B 505 - 19 82 203189 32 14 13 18 chain 7741 chr3 198022430 + 90122123 90122211 LTR7Y 441 + 334 422 172653 88 chain 29204 chr3 198022430 + 90132133 90132537 LTR7 482 + 0 469 88023 69 8 46 109 9 41 12 11 5 23 0 1 163 chain 138405 chr3 198022430 + 90132569 90134252 HERVH-int 3825 + 1923 3825 26412 166 8 13 434 0 1 555 0 3 25 0 210 495 chain 23371 chr3 198022430 + 90135515 90135865 LTR7 482 + 0 469 113809 68 7 96 60 9 41 20 12 7 20 0 1 69 0 2 85 chain 113381 chr3 198022430 + 90146011 90147396 L1PA6 6164 - 3 1410 33256 6 5 0 117 0 3 38 0 1 180 1 0 386 0 2 109 1 5 43 0 18 499 chain 61774 chr3 198022430 + 90147399 90148128 L1PA6 6164 + 4041 4776 52007 171 0 1 114 0 1 437 0 4 7 chain 517096 chr3 198022430 + 90154149 90160282 L1PA5 6144 - 12 6144 5474 137 0 1 700 1 2 884 0 1 62 0 4 400 8 7 433 0 1 136 12 11 194 1 2 748 13 6 888 1 0 4 4 0 184 5 7 218 0 1 501 1 2 598 chain 11857 chr3 198022430 + 90173939 90174072 L1PA4 6152 - 530 663 152803 133 chain 42321 chr3 198022430 + 90174074 90174561 L1PA4 6152 + 5648 6134 66242 354 1 0 132 chain 3186 chr3 198022430 + 90180064 90180100 MLT2D 439 + 403 439 221199 36 chain 200800 chr3 198022430 + 90205344 90207585 L1PA3long 6157 - 1 2241 19158 413 0 1 707 1 0 1032 1 0 87 chain 6070 chr3 198022430 + 90209374 90209448 THE1D 372 + 248 322 184652 74 chain 10135 chr3 198022430 + 90211520 90211721 L1MA5A 2387 + 2121 2283 159923 33 3 1 26 6 0 34 3 0 8 35 7 53 chain 563223 chr3 198022430 + 90218717 90224748 L1HS 6032 - 0 6032 263 5295 0 1 736 chain 502137 chr3 198022430 + 90236823 90242908 L1PA6 6164 - 17 6164 6720 164 11 13 306 0 1 247 3 0 47 2 1 45 1 5 1532 0 5 87 1 0 264 1 0 157 0 2 81 0 1 331 14 14 504 13 6 35 0 4 110 0 1 473 0 56 336 1 0 259 0 1 309 0 1 205 6 1 56 6 7 242 0 2 236 chain 133901 chr3 198022430 + 90244818 90246336 L1PA3long 6157 - 0 1519 27238 338 0 1 1180 chain 4377 chr3 198022430 + 90253378 90253427 MIR 256 + 111 160 202224 49 chain 2993 chr3 198022430 + 90266472 90266509 MER20B 722 + 523 560 225191 37 chain 78698 chr3 198022430 + 90267703 90268749 MER11A 1151 + 0 1131 44190 55 0 99 95 4 1 41 3 5 30 0 2 60 0 1 299 0 1 146 42 24 76 5 3 6 0 3 184 chain 6135 chr3 198022430 + 90285402 90285474 MER52D 1964 + 1892 1964 184132 72 chain 9071 chr3 198022430 + 90295215 90295481 L1PB1 5432 - 10 248 165213 6 1 0 12 1 0 12 1 0 4 4 0 17 2 1 12 74 57 21 2 1 43 18 16 36 chain 94330 chr3 198022430 + 90313985 90315047 L1PA3long 6157 - 2487 3549 38230 1062 chain 215331 chr3 198022430 + 90315047 90317521 L1PA3long 6157 + 3678 6149 18142 2320 4 0 6 0 4 136 3 0 5 chain 246299 chr3 198022430 + 90327767 90330547 L1PA3long 6157 - 0 2781 16427 2260 5 6 515 chain 34827 chr3 198022430 + 90330554 90331010 L1P1 4361 + 2365 2821 76436 288 10 10 158 chain 11584 chr3 198022430 + 90356052 90356187 L1P1 4361 - 164 301 153950 47 0 2 88 chain 473276 chr3 198022430 + 90356227 90361595 L1PA2 6032 - 3 5375 7939 259 1 0 80 1 0 760 0 1 167 0 1 53 0 1 477 0 4 635 1 0 1028 0 1 41 0 1 637 5 0 841 0 3 382 chain 76874 chr3 198022430 + 90361596 90362506 L1PA3long 6157 - 2071 2985 45046 232 0 1 608 9 13 17 1 0 43 chain 167351 chr3 198022430 + 90362506 90364437 L1PA3long 6157 + 4220 6152 22351 439 1 0 230 0 1 949 0 1 155 5 0 6 2 7 144 chain 67717 chr3 198022430 + 90369273 90370074 L1P1 4361 - 1105 1917 49359 97 4 3 463 1 13 236 chain 19474 chr3 198022430 + 90370075 90370297 L1PA3long 6157 + 5601 5823 128737 222 chain 27603 chr3 198022430 + 90370297 90370629 L1PA3long 6157 + 5824 6157 94340 147 0 1 185 chain 560088 chr3 198022430 + 90383231 90389253 L1HS 6032 + 10 6032 352 6022 chain 266469 chr3 198022430 + 90418537 90421670 L1PA3long 6157 - 6 3149 15364 834 0 4 524 0 1 434 0 4 158 0 1 1183 chain 374657 chr3 198022430 + 90421670 90426123 L1PA3long 6157 + 1695 6157 10935 695 0 4 64 0 2 716 0 1 368 1 2 129 1 0 449 0 1 185 1 0 1632 10 12 202 chain 524945 chr3 198022430 + 90431620 90437601 L1PA2 6032 - 20 6028 4689 826 0 4 232 0 2 2717 12 27 122 0 4 670 1 2 42 0 1 1107 1 0 183 1 2 67 chain 15739 chr3 198022430 + 90451066 90451258 L1PA2 6032 - 10 199 139145 5 3 0 184 chain 133049 chr3 198022430 + 90468872 90470396 L1P1 4361 + 2807 4328 27413 5 3 0 350 3 5 981 1 0 157 1 0 23 chain 3535 chr3 198022430 + 90475384 90475423 U3 216 + 0 39 214776 39 chain 516031 chr3 198022430 + 90479816 90485824 L1PA3long 6157 - 9 6149 5569 138 5 6 704 1 0 464 0 1 54 0 6 635 1 0 1070 2 1 663 0 1 43 3 0 1458 0 128 606 16 17 145 chain 213081 chr3 198022430 + 93508033 93510317 L1HS 6032 + 3746 6030 18290 2284 chain 526404 chr3 198022430 + 93520234 93527459 L1PA4 6152 - 0 6152 4556 851 0 1 945 0 4 2031 1 2 1041 1079 0 33 1 0 234 0 1 146 0 1 286 1 0 576 chain 22831 chr3 198022430 + 93525103 93525364 L1PA3long 6157 - 811 1072 115181 261 chain 71026 chr3 198022430 + 93525364 93526162 L1PA3long 6157 + 5353 6152 47914 656 0 1 142 chain 11383 chr3 198022430 + 93540848 93541047 L1MA5A 2387 + 2121 2283 154772 33 3 1 26 5 0 34 3 0 15 27 0 53 chain 11867 chr3 198022430 + 93547646 93547778 L1PA3long 6157 + 6025 6157 152758 132 chain 485667 chr3 198022430 + 93551725 93557252 L1PA4 6152 + 611 6151 7535 109 0 1 484 0 11 330 0 1 929 0 4 623 2 1 61 1 0 613 0 1 32 4 1 2339 chain 511122 chr3 198022430 + 93565614 93571738 L1PA6 6164 - 8 6164 6058 180 4 6 302 0 1 298 2 1 694 0 1 915 1 0 173 0 16 132 4 3 244 0 1 864 12 0 312 0 1 277 0 1 125 0 1 247 0 1 432 0 1 19 3 0 641 0 22 6 0 2 237 chain 21992 chr3 198022430 + 93578954 93579227 L1PA16 3655 + 3304 3578 120264 78 0 1 195 chain 20945 chr3 198022430 + 93585457 93585742 L1PA8 5853 + 5573 5853 124133 36 2 0 66 5 4 12 1 0 49 2 1 19 1 0 87 0 1 5 chain 4377 chr3 198022430 + 93595002 93595051 MIR 256 + 111 160 202223 49 chain 29315 chr3 198022430 + 93605751 93606061 AluYb8 318 - 8 318 87467 310 chain 81370 chr3 198022430 + 93608455 93609519 MER11A 1151 + 0 1151 43021 55 0 99 52 1 3 78 7 9 40 0 1 51 0 1 408 51 0 6 1 0 16 6 40 292 chain 46932 chr3 198022430 + 93622659 93623171 L1PA2 6032 - 1 513 61280 512 chain 6135 chr3 198022430 + 93626511 93626583 MER52D 1964 + 1892 1964 184131 72 chain 4264 chr3 198022430 + 93631777 93631826 MSTD-int 1705 - 11 60 203707 49 chain 9659 chr3 198022430 + 93633533 93633798 L1PB1 5432 - 9 245 162303 9 2 0 10 1 0 12 1 0 4 4 0 17 2 1 12 14 12 14 1 0 5 3 1 14 28 16 16 1 0 44 18 16 33 chain 96798 chr3 198022430 + 93636277 93637512 LTR12C 1709 + 0 1709 37613 41 0 1 159 0 27 37 1 2 28 5 6 163 0 1 22 5 6 243 0 278 57 0 47 101 0 1 4 2 6 74 0 1 109 0 102 64 0 10 23 13 12 84 chain 34060 chr3 198022430 + 93655891 93656669 LTR2B 499 - 1 490 77527 181 1 0 8 5 6 104 320 14 55 0 19 46 1 0 51 1 0 5 chain 220656 chr3 198022430 + 93657805 93661009 HERVH-int 3825 + 768 3825 17840 10 1 0 202 2 3 240 30 0 200 0 1 7 23 14 157 0 1 4 1 0 80 1 0 382 11 0 17 4 9 275 0 28 32 108 131 311 7 17 85 204 41 810 chain 136040 chr3 198022430 + 93663192 93664864 L1P1 4361 + 2660 4341 26824 35 4 18 270 6 5 189 1 0 50 15 6 187 0 11 247 4 0 97 0 1 267 0 1 106 1 0 155 1 0 23 2 1 12 chain 17834 chr3 198022430 + 93667200 93667396 L1P1 4361 - 1666 1862 133291 196 chain 504037 chr3 198022430 + 93668561 93674580 L1PA5 6144 + 0 6144 6598 120 0 14 43 0 1 253 11 10 708 0 3 17 9 0 125 0 93 718 1 15 442 0 4 982 15 18 111 3 0 206 0 2 157 0 1 298 0 4 144 2 0 893 0 1 761 chain 77199 chr3 198022430 + 93682756 93683758 MER11A 1151 + 0 1143 44866 61 1 100 15 8 0 24 1 0 94 4 0 32 0 2 60 0 1 51 5 6 51 7 8 33 0 1 296 0 49 259 chain 64645 chr3 198022430 + 93683758 93684521 LTR17 781 + 18 781 50726 103 0 9 177 10 0 18 0 1 455 chain 3751 chr3 198022430 + 93686769 93686814 HY4 93 + 0 45 211116 45 chain 9781 chr3 198022430 + 93703237 93703426 Tigger2 2703 - 247 431 161697 75 3 0 5 1 7 25 7 5 19 3 0 5 14 8 22 0 3 10 chain 3449 chr3 198022430 + 93727865 93727903 MER66B 489 + 295 333 216228 38 chain 19220 chr3 198022430 + 93760645 93760918 AluSg7 307 + 9 298 129474 43 5 19 75 10 13 45 9 8 86 chain 146668 chr3 198022430 + 93762524 93764304 SVA_A 1864 + 25 1864 25059 664 3 0 20 40 0 23 0 39 42 0 73 100 1 0 3 2 0 34 3 0 75 2 0 37 2 0 9 1 0 138 2 0 30 0 1 258 0 2 291 chain 9021 chr3 198022430 + 93775262 93775608 MLT1B 390 - 0 390 165485 42 5 6 28 0 2 7 180 219 39 11 13 34 chain 512963 chr3 198022430 + 93791649 93800207 L1PA7 6471 - 1 6466 5883 262 0 1 590 0 3 497 2 1 162 3 0 704 7 8 75 2136 0 45 5 8 103 3 2 512 1 0 254 4 0 6 0 4 170 0 3 352 0 4 65 1 2 161 6 11 4 0 1 450 0 1 150 0 1 512 24 25 27 26 42 140 21 27 264 0 1 66 9 14 153 13 10 104 1 0 66 1 0 101 66 67 234 chain 5005 chr3 198022430 + 93802335 93802444 MER51A 677 - 346 478 195092 39 20 39 25 7 11 18 chain 7450 chr3 198022430 + 93808670 93808758 MER50 708 + 598 686 174442 88 chain 4413 chr3 198022430 + 93809920 93809969 MER50B 698 - 32 81 201765 49 chain 17314 chr3 198022430 + 93829865 93830121 Tigger3b 1229 - 88 346 134747 17 10 7 102 0 4 21 8 10 39 1 0 58 chain 3999 chr3 198022430 + 93838296 93838343 MER1B 344 - 81 128 207397 47 chain 24199 chr3 198022430 + 93848586 93848887 AluSg7 307 - 2 297 109223 58 4 0 115 2 0 122 chain 5382 chr3 198022430 + 93894744 93894807 L1MB2 1706 - 137 200 191167 63 chain 28215 chr3 198022430 + 93899553 93899908 L1PA6 6164 - 12 368 92250 5 1 0 211 1 4 100 1 0 36 chain 29216 chr3 198022430 + 93912259 93912568 AluYa5 310 - 1 310 87980 309 chain 8720 chr3 198022430 + 93928516 93928666 MSTB1 431 - 3 154 167087 82 29 30 39 chain 16764 chr3 198022430 + 93928932 93929203 L1PA16 3655 - 80 365 136214 112 50 64 109 chain 22042 chr3 198022430 + 93952728 93952984 AluSg7 307 + 14 271 120062 117 0 1 139 chain 332027 chr3 198022430 + 93954018 93960168 L1PA6 6164 - 2 4190 12128 11 0 5 142 19 15 590 18 19 56 3 9 153 0 142 912 0 2 18 4 6 281 309 0 279 7 8 34 1 2 261 5 4 22 7 6 46 0 1 300 1808 0 121 0 1 261 7 6 475 chain 166447 chr3 198022430 + 93957509 93959304 L1PA2 6032 - 0 1795 22464 1795 chain 79276 chr3 198022430 + 94045864 94046829 L1PA7 6471 - 1 973 43924 228 0 3 259 0 1 276 2 3 83 0 3 17 6 5 94 chain 61885 chr3 198022430 + 94067108 94067871 LTR12 884 + 0 869 51952 54 0 107 175 1 2 43 2 0 488 chain 192112 chr3 198022430 + 94103253 94105613 L1PA7 6471 + 4111 6461 19857 173 17 15 1054 10 11 12 5 6 239 1 0 639 10 0 55 0 1 145 chain 2890 chr3 198022430 + 94116366 94116493 MLT1B 390 + 203 368 227198 12 7 46 16 63 62 29 chain 29463 chr3 198022430 + 94131566 94132000 LTR7Y 441 - 0 441 86782 197 68 84 57 9 0 103 chain 23396 chr3 198022430 + 94143557 94143876 L1PA6 6164 + 5834 6159 113668 109 14 22 134 3 1 59 chain 9072 chr3 198022430 + 94150358 94150455 AluYg6 310 + 203 300 165209 97 chain 83553 chr3 198022430 + 94157638 94158561 L1PA3long 6157 + 5229 6148 42096 329 4 0 590 chain 14709 chr3 198022430 + 94163702 94163874 L1PA5 6144 + 5967 6138 142242 131 1 0 40 chain 115767 chr3 198022430 + 94195325 94196788 L1PA8 5853 + 4400 5853 32537 581 1 0 28 2 0 76 1 2 4 1 0 466 6 5 47 2 0 69 13 11 53 1 0 18 2 1 92 chain 3630 chr3 198022430 + 94215009 94215051 MLT1B 390 + 98 140 213156 42 chain 26001 chr3 198022430 + 94252558 94252853 AluY 311 + 0 300 100010 19 1 0 107 0 6 168 chain 4966 chr3 198022430 + 94255633 94255692 MLT1A0-int 1658 + 1593 1652 195528 59 chain 28579 chr3 198022430 + 94261152 94261454 AluYa5 310 - 8 310 90827 302 chain 73742 chr3 198022430 + 94269675 94270514 L1PA4 6152 - 2952 3792 46555 91 1 2 747 chain 251054 chr3 198022430 + 94270514 94273430 L1PA4 6152 + 3218 6143 16175 446 0 1 750 1 0 220 1 0 134 0 1 294 0 7 525 3 0 197 0 1 195 5 0 9 1 9 31 0 1 104 chain 53152 chr3 198022430 + 94273570 94274223 L1PA7 6471 + 5795 6464 56923 43 0 1 455 15 23 6 0 4 5 0 3 129 chain 45370 chr3 198022430 + 94281674 94282187 MER9a2 513 - 0 513 62635 513 chain 6238 chr3 198022430 + 94289438 94289514 L1PA5 6144 - 1 77 183264 76 chain 26646 chr3 198022430 + 94293248 94293543 L1PA3long 6157 - 376 672 97494 136 0 1 159 chain 34776 chr3 198022430 + 94293543 94293919 L1PA3long 6157 + 5781 6157 76512 376 chain 15230 chr3 198022430 + 94303549 94303744 MER30 238 - 13 238 140692 93 1 31 101 chain 28523 chr3 198022430 + 94304364 94304704 L1P3 4156 - 3109 3449 91086 340 chain 127555 chr3 198022430 + 94318125 94319976 L1PB1 5432 + 3558 5404 28682 21 1 0 4 0 1 137 0 8 86 0 5 4 1 0 209 0 7 127 0 4 16 0 1 345 0 3 85 3 0 84 0 2 98 10 10 288 26 24 11 1 0 6 19 14 9 2 0 53 2 1 16 1 0 39 5 4 16 2 0 11 14 5 15 27 22 21 1 0 21 1 0 13 chain 6348 chr3 198022430 + 94325707 94325778 LTR17 781 - 455 526 182394 71 chain 511521 chr3 198022430 + 94349475 94355608 L1PA6 6164 + 0 6152 6025 371 0 8 9 16 15 106 2 1 518 1 0 843 0 1 317 0 1 128 15 7 865 0 1 763 0 2 687 1 0 212 0 17 390 0 1 712 1 2 23 10 9 143 chain 70983 chr3 198022430 + 94366022 94366903 MER11D 897 + 0 897 47935 15 3 1 256 14 10 311 3 26 159 2 1 118 chain 25479 chr3 198022430 + 94370049 94370389 L1PA10 4194 - 1275 1617 102320 270 0 1 24 15 16 31 chain 8188 chr3 198022430 + 94395851 94395962 L1PA10 4194 + 405 514 170027 79 3 1 29 chain 23662 chr3 198022430 + 94398190 94398550 THE1A 353 + 1 353 112240 19 5 6 84 1 0 10 4 3 110 11 12 33 8 0 75 chain 5764 chr3 198022430 + 94403640 94403712 MSTD 398 + 0 72 187493 72 chain 28443 chr3 198022430 + 94448569 94448979 MLT2A1 477 - 8 477 91409 31 6 67 176 3 0 25 10 7 102 4 8 53 chain 209122 chr3 198022430 + 94448989 94451669 HERVL-int 5654 - 10 2694 18556 77 41 41 95 0 1 8 0 4 171 25 22 580 0 1 571 3 0 24 0 1 79 1 3 125 4 5 876 chain 550605 chr3 198022430 + 94464313 94470340 L1PA2 6032 + 1 6032 1364 1119 0 1 605 0 1 1411 0 1 1838 0 1 1054 chain 288448 chr3 198022430 + 94480884 94484931 L1PB1 5432 - 130 5413 14128 6 2 0 13 11 10 36 1 0 16 3 2 50 2 0 11 16 11 13 1 0 14 36 17 5 0 1 44 39 39 144 0 1 164 0 2 71 3 0 268 0 1 6 1 3 22 0 1 4 2 1 70 1 0 514 78 19 523 11 1 253 12 16 36 0 3 49 2 0 118 52 1365 160 1 2 383 2 3 38 0 14 740 chain 35874 chr3 198022430 + 94511811 94512224 L1PA5 6144 + 5734 6141 75036 401 6 0 6 chain 92231 chr3 198022430 + 94513805 94514827 L1PA3long 6157 + 5125 6157 38895 207 4 14 811 chain 32415 chr3 198022430 + 94538399 94538817 L1PA8A 6298 + 5870 6291 80178 292 3 4 17 3 5 103 chain 528262 chr3 198022430 + 94554867 94560923 L1PA4 6152 + 2 6151 4376 573 1 0 278 17 0 122 0 1 944 0 1 307 4 112 762 0 1 4 1 0 575 1 2 355 1 0 214 2 1 601 0 1 1152 0 1 142 chain 3720 chr3 198022430 + 94562816 94562860 L1M4c 1769 + 960 1004 211639 44 chain 532217 chr3 198022430 + 94564872 94570879 L1PA3long 6157 + 0 6157 3936 152 0 1 283 1 0 341 1 129 1069 0 1 194 2 3 61 1 2 1017 0 19 2493 1 0 244 0 1 147 chain 78395 chr3 198022430 + 94578736 94579790 MER11A 1151 + 0 1151 44324 79 0 8 142 1 0 65 0 11 227 0 13 137 2 5 16 1 2 8 1 2 21 2 0 7 0 4 69 0 1 17 1 59 99 5 6 87 7 6 60 chain 71908 chr3 198022430 + 94581910 94582919 MER11A 1151 - 0 1151 47519 170 0 1 57 8 17 23 17 48 145 5 6 45 6 7 93 0 1 88 9 10 21 0 1 111 18 15 138 0 99 55 chain 53642 chr3 198022430 + 94603322 94603970 L1PA7 6471 - 10 659 56592 152 1 2 458 1 0 4 0 1 32 chain 52528 chr3 198022430 + 94607416 94608083 HERVL-int 5654 + 4975 5646 57281 333 0 6 63 5 3 266 chain 23306 chr3 198022430 + 94633547 94633847 AluY 311 + 0 311 114169 132 7 8 31 0 6 98 1 5 31 chain 8810 chr3 198022430 + 94645962 94646138 L1MCa 1829 + 1570 1752 166599 40 14 12 15 3 0 13 13 27 57 3 0 18 chain 9853 chr3 198022430 + 94646617 94646736 L1PA5 6144 + 6016 6135 161328 119 chain 466014 chr3 198022430 + 94659824 94666044 L1PA8A 6298 - 26 6257 8188 264 0 1 206 0 3 268 0 4 42 7 4 54 2 0 365 2 1 38 0 3 286 0 1 62 0 1 220 0 1 566 4 5 345 0 1 38 0 2 20 8 12 37 0 4 14 2 0 32 4 0 95 0 7 760 1 0 135 3 5 71 1 4 77 0 1 595 8 1 117 0 2 198 0 1 16 6 5 13 0 3 111 0 1 18 0 1 14 0 1 12 6 7 298 0 1 99 0 2 23 0 1 109 11 29 26 2 13 65 19 16 15 2 0 62 0 4 3 6 0 27 2 1 41 2 0 8 5 1 14 1 0 6 1 0 8 2 1 7 1 0 13 1 0 4 2 0 15 2 0 11 2 1 4 1 0 15 2 1 9 1 0 9 29 20 18 1 3 5 5 0 16 22 12 10 1 0 14 chain 136873 chr3 198022430 + 94702953 94704631 L1PA5 6144 - 0 1651 26668 147 35 44 75 2 1 583 1 0 541 1 0 190 3 4 26 34 0 40 chain 109737 chr3 198022430 + 94717062 94718386 L1PA7 6471 - 14 1341 34271 147 13 18 671 1 0 391 1 0 100 chain 263768 chr3 198022430 + 94732277 94735268 L1PA4 6152 - 1234 4236 15496 567 0 8 846 0 4 21 0 2 228 0 1 692 1 0 185 8 5 443 chain 89820 chr3 198022430 + 94735268 94736328 L1PA4 6152 + 4943 5978 39473 357 1 5 644 29 0 29 chain 13864 chr3 198022430 + 94736356 94736514 L1PA4 6152 + 5984 6143 145019 96 0 1 62 chain 77731 chr3 198022430 + 94740670 94741716 MER11C 1089 + 0 1063 44643 22 5 6 219 7 16 54 0 4 65 1 0 171 22 21 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 119 0 1 23 chain 3523 chr3 198022430 + 94748198 94748238 L1MC3 1789 + 329 369 215011 40 chain 52927 chr3 198022430 + 94750384 94751783 L1PB2 3958 - 120 1466 57067 60 5 4 20 7 5 42 4 0 28 10 9 53 1 0 68 0 3 4 1 0 91 575 502 25 1 0 125 0 5 53 2 11 20 1 0 41 6 16 39 0 3 60 6 8 51 chain 25729 chr3 198022430 + 94757599 94757867 AluYa5 310 - 4 272 101172 268 chain 547097 chr3 198022430 + 94778658 94784795 L1PA3long 6157 - 15 6152 1818 1072 1 0 77 1 0 153 7 5 2697 0 2 288 0 1 1759 0 1 82 chain 11414 chr3 198022430 + 94785721 94785869 L1PA16 3655 + 2922 3069 154621 68 1 0 79 chain 72541 chr3 198022430 + 94787536 94788346 L1PA4 6152 + 5336 6146 47250 810 chain 45624 chr3 198022430 + 94811790 94812284 L1PA2 6032 + 5538 6032 62380 494 chain 18734 chr3 198022430 + 94819688 94820042 THE1B 368 + 0 365 130869 87 7 8 16 20 24 34 31 26 4 1 0 11 0 4 13 1 11 6 1 0 62 4 3 56 chain 33544 chr3 198022430 + 94856424 94856809 L1PA5 6144 + 5752 6138 78324 138 0 1 247 chain 3712 chr3 198022430 + 94866579 94866625 MLT1C 463 + 63 114 211759 21 0 5 25 chain 86089 chr3 198022430 + 94877574 94878606 L1PA7 6471 - 5 1047 41125 838 5 15 189 chain 10248 chr3 198022430 + 94880950 94881078 THE1C-int 1605 + 1463 1590 159383 70 1 0 57 chain 465143 chr3 198022430 + 94897826 94904034 L1PA7 6471 - 1 6468 8214 17 0 1 138 0 1 112 14 12 50 0 2 6 7 3 14 0 9 394 4 1 92 0 4 839 0 3 102 0 4 56 0 1 103 0 1 450 12 13 32 0 1 85 0 3 92 10 2 286 0 426 49 0 1 163 0 1 205 1 2 22 214 6 34 4 1 221 0 1 50 0 1 5 1 0 115 9 8 310 0 1 20 0 3 499 1 4 217 0 1 119 8 6 310 0 1 325 19 21 34 7 23 39 0 1 32 51 52 209 chain 89410 chr3 198022430 + 94920172 94921423 L1PA8 5853 - 38 1288 39838 52 1 0 22 3 2 34 28 26 69 2 0 46 1 0 469 4 1 10 7 9 60 8 4 15 7 9 303 0 9 110 chain 111507 chr3 198022430 + 94934282 94935967 MER4-int 2692 + 74 1777 33810 25 1 0 15 0 2 11 1 2 17 5 6 4 1 0 230 39 35 108 10 19 31 0 20 8 23 10 33 0 2 9 0 3 100 0 4 128 1 0 159 63 35 15 1 0 44 0 1 24 1 0 19 0 3 143 2 1 50 1 17 27 1 0 26 5 8 271 0 3 10 1 4 12 1 0 9 chain 20381 chr3 198022430 + 94965378 94965798 THE1B 368 + 0 368 125958 13 2 0 27 1 0 3 67 0 39 10 29 40 24 24 109 16 15 69 chain 22931 chr3 198022430 + 94970730 94971036 MER4A 717 - 300 616 115957 143 2 14 96 0 1 42 3 0 20 chain 8166 chr3 198022430 + 94977714 94977815 MER41E 591 - 463 564 170138 101 chain 446450 chr3 198022430 + 95001788 95006803 L1PA3long 6157 - 0 6151 8864 1024 0 1 101 1 0 2635 0 1130 27 0 1 282 0 4 107 1 2 837 chain 12709 chr3 198022430 + 95051871 95052066 MER30 238 + 36 237 149421 62 4 0 9 4 17 69 3 0 44 chain 46255 chr3 198022430 + 95060120 95060705 LTR22 571 - 5 571 61809 115 1 2 193 19 0 180 1 0 76 chain 18952 chr3 198022430 + 95067090 95067319 LTR2 463 + 233 463 130217 135 0 1 94 chain 35194 chr3 198022430 + 95075681 95076154 LTR2B 499 + 0 499 75927 14 0 1 15 1 11 24 4 0 45 0 19 176 0 5 6 6 1 182 chain 30336 chr3 198022430 + 95116206 95116523 AluYb8 318 - 1 318 83822 317 chain 7578 chr3 198022430 + 95149765 95149852 THE1C 375 + 243 330 173679 87 chain 65998 chr3 198022430 + 95205956 95206697 L1PA3long 6157 - 0 740 50100 259 1 0 481 chain 278570 chr3 198022430 + 95260295 95270475 L1PA5 6144 - 1 3362 14715 10 3 2 546 6823 0 1576 3 0 240 0 10 601 3 1 375 chain 24692 chr3 198022430 + 95267107 95267408 L1PA4 6152 + 5846 6152 106487 5 0 2 156 0 3 140 chain 18587 chr3 198022430 + 95267418 95267628 L1PA5 6144 - 279 489 131265 210 chain 3467 chr3 198022430 + 95273084 95273123 LTR33 499 - 4 43 215849 39 chain 19073 chr3 198022430 + 95298721 95298946 AluSp 311 - 25 250 129896 225 chain 4824 chr3 198022430 + 95306908 95307013 LTR12C 1709 - 991 1055 197090 35 41 0 29 chain 403038 chr3 198022430 + 95308945 95313866 HERV9-int 5642 - 830 5642 9998 531 19 0 136 6 3 5 0 3 1411 0 2 151 1 2 359 1 0 627 6 3 328 4 0 141 1 0 4 3 0 63 80 0 252 1 0 791 chain 26113 chr3 198022430 + 95313920 95314313 LTR12C 1709 - 0 368 99564 51 47 46 71 1 0 69 23 0 131 chain 22669 chr3 198022430 + 95326994 95327316 THE1B 368 - 22 355 117223 53 7 6 87 2 0 28 1 0 114 1 16 29 chain 492656 chr3 198022430 + 95363897 95370073 L1PA5 6144 + 1 6144 7238 134 13 27 14 47 46 362 0 3 165 11 12 188 25 0 213 12 4 493 0 1 637 0 1 12 9 5 154 0 2 688 1 0 8 1 0 25 2 1 161 3 4 148 1 0 25 13 1 448 4 1 360 0 4 831 2 0 712 1 0 253 chain 532591 chr3 198022430 + 95376158 95382175 L1PA3long 6157 - 6 6149 3899 755 0 1 759 0 1 1920 20 15 1796 0 128 617 6 7 144 chain 5579 chr3 198022430 + 95391211 95391572 MSTD 398 - 26 398 189283 29 81 82 17 184 194 50 chain 30572 chr3 198022430 + 95418713 95419170 L1MA2 4263 + 2991 3445 83258 61 1 0 278 30 34 27 14 8 46 chain 21717 chr3 198022430 + 95448720 95448975 AluY 311 + 38 292 121325 88 1 0 166 chain 62076 chr3 198022430 + 95463007 95463703 SVA_D 2077 - 0 744 51863 639 1 0 16 0 49 40 chain 36596 chr3 198022430 + 95463703 95464175 SVA_D 2077 + 397 943 73087 63 0 39 107 17 15 143 0 40 105 6 3 31 chain 7401 chr3 198022430 + 95464193 95464285 SVA_F 1814 + 1133 1221 174766 76 4 0 12 chain 116240 chr3 198022430 + 95474606 95475915 L1PA5 6144 - 0 1308 32360 1122 1 0 186 chain 96543 chr3 198022430 + 95475918 95477012 L1PA5 6144 + 3740 4839 37680 601 0 4 411 0 1 82 chain 114007 chr3 198022430 + 95488112 95489551 L1PA7 6471 + 5040 6460 33093 13 1 0 4 0 1 25 0 1 133 30 3 13 1 3 290 0 1 94 1 0 530 0 4 165 8 9 131 chain 7380 chr3 198022430 + 95490397 95490487 L1PA8 5853 - 0 90 174895 90 chain 341570 chr3 198022430 + 95495669 95499601 L1PA5 6144 + 2178 6125 11849 350 0 1 628 2 1 757 0 3 5 3 0 418 0 4 777 0 1 374 0 11 143 6 5 469 chain 10024 chr3 198022430 + 95505036 95505142 L1PA4 6152 - 433 539 160459 106 chain 31540 chr3 198022430 + 95505143 95505495 L1PA4 6152 + 5785 6137 81583 352 chain 15526 chr3 198022430 + 95509287 95509534 L1PA16 3655 - 146 391 139812 99 8 9 72 6 7 31 8 4 23 chain 29104 chr3 198022430 + 95520268 95520580 AluYb8 318 + 0 311 88529 132 1 0 179 chain 152786 chr3 198022430 + 95521356 95523020 L1PA2 6032 - 1 1665 24179 1664 chain 166800 chr3 198022430 + 95523020 95524831 L1PA2 6032 + 2562 4372 22418 487 1 0 1323 chain 50953 chr3 198022430 + 95535485 95536239 MER4E1 777 + 0 769 58341 17 2 3 193 53 30 26 9 13 47 0 19 84 0 1 29 0 4 10 0 1 64 2 10 14 0 1 69 0 1 4 1 0 67 1 0 62 chain 7925 chr3 198022430 + 95552712 95552800 L1PA5 6144 - 0 88 171478 88 chain 51603 chr3 198022430 + 95552800 95553392 L1PA5 6144 + 4521 5122 57889 25 7 13 121 0 3 439 chain 22039 chr3 198022430 + 95553392 95553642 L1PA5 6144 + 5123 5374 120073 160 0 1 90 chain 58238 chr3 198022430 + 95553651 95554309 L1PA5 6144 + 5374 6032 53841 658 chain 71812 chr3 198022430 + 95571789 95572563 L1PA2 6032 - 3 777 47561 774 chain 20194 chr3 198022430 + 95574005 95574235 AluY 311 + 81 311 126544 230 chain 20589 chr3 198022430 + 95575479 95575736 L1PA7 6471 - 643 897 125336 125 1 0 81 2 0 48 chain 47780 chr3 198022430 + 95575765 95576366 L1PA7 6471 + 5835 6470 60631 269 0 13 144 0 22 183 1 0 4 chain 535275 chr3 198022430 + 95579231 95585362 L1PA4 6152 + 0 6136 3552 2723 0 1 442 1 0 349 0 1 1625 0 1 158 0 1 269 0 1 205 0 1 359 chain 22500 chr3 198022430 + 95592683 95592966 AluSp 311 + 11 298 118025 42 1 5 240 chain 262044 chr3 198022430 + 95593249 95596890 L1PA7 6471 + 3143 6469 15581 6 3 0 155 0 1 179 9 2 11 1 0 334 1 2 241 1 2 113 0 2 87 0 1 94 0 1 294 0 4 76 0 1 121 5 2 18 23 34 30 0 1 23 2 1 5 0 1 488 0 1 224 0 2 299 333 4 71 1 0 229 12 14 152 chain 29751 chr3 198022430 + 95611254 95611587 L1P1 4361 - 49 380 85644 7 1 0 155 1 0 169 chain 5804 chr3 198022430 + 95611588 95611650 L1HS 6032 + 5965 6027 187096 62 chain 3310 chr3 198022430 + 95648792 95648937 MER76 683 - 508 673 218770 15 92 112 38 chain 16680 chr3 198022430 + 95667506 95667719 LTR12_ 688 - 0 316 136463 194 1 104 18 chain 161663 chr3 198022430 + 95667719 95669833 HERV9-int 5642 - 3492 5638 23104 565 10 7 467 1 3 4 1 0 77 72 1 100 0 110 25 1 0 57 5 4 126 8 7 193 1 0 43 3 4 158 2 1 129 1 0 65 chain 3152 chr3 198022430 + 95668852 95668887 HERV9-int 5642 - 4543 4578 221905 35 chain 3105 chr3 198022430 + 95682713 95682956 MSTD 398 + 0 247 222837 24 193 197 26 chain 19831 chr3 198022430 + 95691670 95692001 THE1B 368 + 0 344 127709 39 1 16 52 8 19 7 11 0 36 1 0 23 2 0 84 18 17 7 0 2 42 chain 108447 chr3 198022430 + 95695369 95696947 L1PB1 5432 + 3874 5424 34578 112 0 1 39 0 3 294 3 4 94 4 3 106 1 2 95 0 2 83 1 2 98 4 3 283 5 7 10 7 0 6 0 1 16 1 0 9 27 20 53 2 1 16 6 5 39 1 0 15 23 12 19 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 260095 chr3 198022430 + 95707675 95710684 L1PA5 6144 + 3136 6142 15692 143 0 1 1061 0 4 390 0 3 330 18 6 216 0 4 12 0 1 498 1 2 84 3 2 242 4 0 7 chain 39614 chr3 198022430 + 95719835 95720409 MER61F 604 + 1 574 69873 306 59 58 116 6 8 4 1 0 40 1 0 41 chain 11680 chr3 198022430 + 95751955 95752106 MER75B 242 + 57 207 153563 88 1 0 62 chain 181959 chr3 198022430 + 95798612 95800611 L1PA3long 6157 + 4158 6157 20789 1999 chain 505244 chr3 198022430 + 95809724 95816219 L1PA7 6471 + 3 6468 6512 143 42 26 146 11 12 69 5 6 246 1 0 172 1 14 164 0 1 4 5 4 66 8 9 89 0 2 61 0 1 29 0 1 76 1 0 211 0 1 12 11 15 380 0 1 4 29 6 76 0 1 39 27 0 387 0 1 158 1 2 34 0 1 201 0 2 46 2 0 581 4 2 426 5 4 75 0 1 563 1 0 4 0 1 113 4 5 76 2 1 631 0 9 157 6 7 43 8 7 222 6 9 25 1 2 181 0 1 391 4 0 9 chain 25097 chr3 198022430 + 95835743 95836097 THE1A 353 + 0 353 104309 54 0 1 41 25 24 82 1 0 151 chain 121516 chr3 198022430 + 95836097 95837676 THE1A-int 1579 + 0 1579 30535 502 4 3 138 6 7 231 1 4 31 1 2 13 2 1 63 1 0 4 1 0 482 1 0 98 chain 10859 chr3 198022430 + 95872002 95872158 MER44A 345 - 90 243 156753 91 5 4 52 2 0 6 chain 51199 chr3 198022430 + 95898745 95899335 L1PA4 6152 - 0 594 58187 13 0 3 521 0 1 56 chain 2385 chr3 198022430 + 95899401 95899466 MER67C 710 - 604 670 234347 5 1 0 13 21 23 25 chain 50634 chr3 198022430 + 95930412 95931042 L1PA7 6471 + 5837 6468 58551 301 0 1 160 1 0 4 7 8 157 chain 10704 chr3 198022430 + 95931221 95931348 THE1B 368 + 241 368 157396 127 chain 13807 chr3 198022430 + 95995861 95996079 MER30 238 - 0 238 145237 80 40 60 98 chain 4185 chr3 198022430 + 96005427 96005472 L1PA3long 6157 + 6112 6157 204773 45 chain 27619 chr3 198022430 + 96008509 96008863 THE1A 353 + 0 353 94296 44 0 1 63 1 0 94 1 0 151 chain 48230 chr3 198022430 + 96016389 96017000 LTR12 884 + 0 869 60291 187 0 157 34 2 0 247 1 104 140 chain 228032 chr3 198022430 + 96017043 96020033 HERV9-int 5642 + 0 2834 17416 726 1 0 30 0 1 38 1 0 68 0 85 138 240 0 21 8 4 133 0 1 226 0 1 564 1 2 689 0 1 106 chain 4123 chr3 198022430 + 96021378 96021433 LTR12 884 + 0 54 174176 50 1 0 4 chain 18381 chr3 198022430 + 96021434 96021695 LTR12 884 + 230 609 131841 44 0 113 150 0 2 6 10 14 5 1 0 45 chain 13986 chr3 198022430 + 96021695 96021852 LTR12 884 + 712 869 144623 157 chain 7667 chr3 198022430 + 96031111 96031235 MER85 139 - 0 134 173126 36 21 31 67 chain 20431 chr3 198022430 + 96040406 96040749 L1PA11 4918 + 4248 4565 125809 80 5 0 62 6 5 12 2 0 67 2 0 11 1 0 3 1 0 20 4 0 9 3 0 5 23 17 15 1 0 11 chain 20926 chr3 198022430 + 96044540 96044873 AluY 311 + 0 308 124190 19 14 5 108 0 1 5 35 19 34 0 1 93 2 0 23 chain 91313 chr3 198022430 + 96045970 96047046 MER11C 1089 + 0 1073 39191 567 9 7 17 1 2 83 1 0 130 2 1 266 chain 218396 chr3 198022430 + 96090888 96093829 L1PA8 5853 - 0 2965 17976 91 5 4 14 1 0 49 19 18 58 11 9 46 1 0 247 0 22 71 0 1 116 0 1 95 0 2 145 0 2 527 0 1 567 18 19 726 7 8 73 3 7 19 13 8 19 chain 183088 chr3 198022430 + 96094877 96096976 L1PA5 6144 - 17 2119 20672 242 1 0 789 0 2 435 1 2 34 0 1 597 chain 85812 chr3 198022430 + 96096976 96097976 L1PA5 6144 + 3007 4034 41064 281 18 44 109 0 1 592 chain 15840 chr3 198022430 + 96102688 96103027 L1PREC2 3366 + 2631 2948 138824 80 1 0 36 7 5 27 0 1 26 2 1 39 11 7 14 76 61 20 chain 3226 chr3 198022430 + 96104989 96105027 L1M2 1805 - 305 343 220482 38 chain 41522 chr3 198022430 + 96121430 96121921 L1PA5 6144 - 12 503 67256 130 16 16 345 chain 20256 chr3 198022430 + 96186467 96186757 L1PA8 5853 - 0 283 126358 93 1 0 64 3 0 6 1 0 9 2 1 68 8 7 35 chain 3340 chr3 198022430 + 96187411 96187449 MIRb 242 + 195 233 218217 38 chain 24126 chr3 198022430 + 96189776 96190055 AluY 311 + 17 298 109604 108 0 1 97 0 1 74 chain 58767 chr3 198022430 + 96201433 96202192 L1PA8 5853 - 2 756 53544 91 1 0 19 2 1 39 2 3 10 2 1 5 1 0 74 2 0 47 1 0 332 1 2 130 chain 27664 chr3 198022430 + 96213325 96213629 AluYh9 303 - 0 303 94171 177 1 0 126 chain 15572 chr3 198022430 + 96223029 96223211 L1PA4 6152 - 0 194 139664 13 0 3 127 0 9 42 chain 504239 chr3 198022430 + 96245514 96252011 L1PA6 6164 + 0 6161 6582 283 7 8 87 21 24 165 1 0 277 0 1 553 0 1 189 0 1 168 0 1 321 324 0 155 8 8 19 0 1 49 11 0 6 12 8 537 0 3 222 2 1 99 5 4 213 1 0 298 0 1 57 15 10 730 8 9 375 2 1 129 1 0 218 5 6 764 0 5 8 8 2 144 chain 58015 chr3 198022430 + 96267516 96268299 L1PA7 6471 - 810 1581 53967 29 0 1 4 1 0 189 7 10 426 26 11 101 chain 67664 chr3 198022430 + 96268304 96269104 L1PA7 6471 + 5671 6462 49380 33 1 0 24 8 0 734 chain 490001 chr3 198022430 + 96288178 96295578 L1PA7 6471 - 28 6471 7366 304 1 0 512 0 4 64 0 4 322 0 3 33 1 5 199 27 28 171 0 12 13 4 3 215 0 1 255 15 10 1185 3 4 74 1016 0 129 1 5 206 0 4 39 17 0 33 5 32 611 0 2 32 0 1 235 7 6 125 2 1 282 7 26 432 0 1 38 0 1 9 2 3 12 10 15 169 0 2 96 10 9 54 14 0 74 1 2 79 0 7 6 16 17 70 0 1 28 0 1 26 15 7 94 chain 81167 chr3 198022430 + 96291582 96292592 MER11A 1151 - 0 1151 43105 24 0 1 178 1 2 87 5 38 12 0 1 303 5 6 4 1 0 106 0 1 93 1 3 124 0 102 66 chain 39414 chr3 198022430 + 96299506 96300033 MLT2A2 560 + 19 560 70138 175 18 21 184 3 14 147 chain 531753 chr3 198022430 + 96320180 96326326 L1PA5 6144 - 3 6144 3995 6 5 0 1597 0 3 492 2 1 452 0 1 37 0 1 849 3 0 1640 0 1 34 1 0 348 0 3 155 4 0 521 chain 8245 chr3 198022430 + 96327663 96327761 U6 107 - 6 107 169708 54 0 3 44 chain 11324 chr3 198022430 + 96332662 96332810 MER72 723 + 550 723 154986 57 0 20 6 0 5 85 chain 88332 chr3 198022430 + 96333310 96334385 MER11B 1079 - 15 1079 40251 293 8 2 196 12 10 304 3 0 259 chain 147792 chr3 198022430 + 96342158 96344185 L1P1 4361 - 352 2044 24905 1180 335 0 512 chain 184100 chr3 198022430 + 96344185 96346322 L1PA5 6144 + 4006 6142 20582 59 9 6 372 2 1 409 0 1 910 0 1 65 0 1 311 chain 258395 chr3 198022430 + 96358420 96361324 L1PA3long 6157 - 0 2940 15786 8 3 0 1251 0 1 1252 0 38 390 chain 10714 chr3 198022430 + 96364787 96365232 LTR12D 1347 - 340 903 157355 47 1 2 30 250 176 17 7 89 37 4 113 52 chain 4767 chr3 198022430 + 96365314 96365368 LTR12D 1347 - 674 728 197736 54 chain 27715 chr3 198022430 + 96369329 96369725 MER51B 395 - 14 395 93990 124 24 22 196 13 0 39 chain 32643 chr3 198022430 + 96373721 96374138 LTR8 732 + 0 433 79774 15 0 1 19 0 9 112 0 6 271 chain 4401 chr3 198022430 + 96385041 96385121 MADE1 96 - 0 96 201912 23 20 36 37 chain 54693 chr3 198022430 + 96385325 96385994 LTR17 781 - 11 781 55910 32 1 23 388 1 0 11 0 9 163 1 0 45 0 72 27 chain 286734 chr3 198022430 + 96387714 96391087 HERV17-int 4347 - 968 4335 14242 234 1 0 87 7 7 493 11 0 67 0 1 1452 0 2 85 0 5 306 0 1 4 1 0 5 14 15 126 0 2 348 1 0 26 2 0 35 1 0 51 1 0 15 chain 61912 chr3 198022430 + 96393540 96394288 LTR17 781 - 7 781 51937 24 0 22 97 0 1 303 1 0 111 1 5 211 chain 177421 chr3 198022430 + 96419403 96422462 HUERS-P2-int 2744 + 2 2742 21213 13 1 0 16 11 5 22 1 0 28 2 0 5 1 0 53 1 0 17 0 58 9 153 120 85 1 0 12 0 1 17 1 0 283 16 14 309 42 31 420 0 1 173 0 2 288 5 0 84 0 2 202 30 61 107 1 0 49 340 8 51 1 0 7 2 1 27 1 0 4 47 44 25 3 0 33 1 0 9 2 0 5 2 0 12 2 0 27 chain 127360 chr3 198022430 + 96428862 96430273 L1PA3long 6157 - 0 1410 28727 259 1 0 1151 chain 11462 chr3 198022430 + 96440360 96440485 L1PA5 6144 - 12 137 154463 125 chain 161159 chr3 198022430 + 96457170 96458958 L1PA4 6152 + 4365 6151 23169 274 1 0 1363 1 0 149 chain 3124 chr3 198022430 + 96469566 96469604 MER52C 1267 + 1008 1046 222493 38 chain 2633 chr3 198022430 + 96469635 96469768 MER52C 1267 + 941 1003 231253 16 14 0 16 70 13 17 chain 19247 chr3 198022430 + 96478787 96479003 AluY 311 + 84 300 129383 216 chain 17642 chr3 198022430 + 96494006 96497510 THE1B 368 - 26 368 133869 12 6 6 31 1 0 97 2 0 13 1 0 3 3171 0 8 1 0 7 1 2 62 2 0 46 4 19 36 chain 286242 chr3 198022430 + 96601211 96605712 L1PB1 5432 - 8 4146 14271 4 1 0 16 1 0 12 6 1 21 1 0 24 2 0 13 9 6 18 29 9 4 1 0 16 1 0 42 2 1 16 2 1 50 3 1 11 16 11 13 9 8 12 80 11 190 0 1 286 20 27 55 14 18 22 1 0 4 8 9 257 313 9 36 0 1 17 2 1 261 0 1 176 10 5 46 5 7 67 0 1 128 1 0 556 5 3 77 1 0 139 0 1 177 2 1 5 0 1 7 0 1 18 2 1 179 0 1 209 7 57 376 95 94 123 11 14 14 0 14 8 19 0 7 1 0 109 chain 27901 chr3 198022430 + 96617591 96617888 AluYg6 310 + 0 297 93367 297 chain 84229 chr3 198022430 + 96622509 96623457 L1PA4 6152 + 5198 6152 41805 102 0 1 840 0 5 6 chain 68688 chr3 198022430 + 96647032 96647919 L1PA11 4918 - 2801 3694 48946 165 0 3 88 0 3 43 3 0 58 0 1 369 0 2 161 chain 532915 chr3 198022430 + 96655455 96661602 L1PA4 6152 - 1 6146 3864 608 0 3 245 0 1 154 3 2 1245 0 3 603 0 1 10 0 1 109 0 1 133 0 1 344 2 1 108 0 3 144 0 3 1191 1 2 391 18 1 21 0 1 245 1 0 255 7 6 309 chain 122128 chr3 198022430 + 96665019 96666410 L1PA5 6144 - 0 1385 30335 148 1 0 705 5 0 532 chain 39521 chr3 198022430 + 96666410 96666856 L1PA5 6144 + 4300 4746 69878 446 chain 14752 chr3 198022430 + 96673618 96673772 AluYb8 318 - 0 154 142094 154 chain 30967 chr3 198022430 + 96683715 96684144 MER57A1 433 - 0 433 82567 130 28 31 166 0 1 105 chain 533784 chr3 198022430 + 96697904 96704034 L1PA5 6144 - 2 6143 3732 21 3 1 174 0 8 1457 1 3 440 0 1 362 3 0 173 7 6 983 0 1 315 0 2 1773 0 3 418 chain 466230 chr3 198022430 + 96722532 96728795 L1PA8A 6298 - 7 6264 8179 106 1 0 54 7 3 156 10 9 5 1 0 186 6 7 237 0 4 34 2 1 343 0 28 293 3 0 947 1 2 255 0 11 159 28 28 8 0 1 301 0 3 609 2 1 178 0 3 310 1 0 528 3 2 9 8 5 51 11 12 51 8 7 130 28 32 41 2 1 13 12 0 257 13 32 144 1 0 259 1 0 3 1 0 10 3 2 16 2 0 30 25 25 18 5 0 23 2 1 42 1 0 8 4 0 13 27 23 12 1 0 5 2 0 15 4 2 9 0 1 7 1 0 12 2 1 9 2 1 14 11 5 5 1 0 4 1 0 19 4 1 20 32 21 19 1 0 5 chain 82956 chr3 198022430 + 96737097 96738085 LTR13 1007 - 0 1007 42355 194 0 1 146 0 10 270 8 13 106 0 3 264 chain 8187 chr3 198022430 + 96739671 96739792 MER85 139 + 4 139 170032 89 12 26 20 chain 123138 chr3 198022430 + 96749921 96751305 L1PA4 6152 + 4771 6152 29995 1177 1 0 198 2 0 6 chain 23706 chr3 198022430 + 96778679 96778992 AluSx4 309 + 0 303 112001 43 5 0 240 5 0 20 chain 29598 chr3 198022430 + 96790212 96790566 THE1A 353 - 0 353 86215 243 1 0 110 chain 8251 chr3 198022430 + 96790583 96790862 L1PB1 5432 - 5 264 169676 4 1 0 5 2 0 14 1 0 11 0 3 10 12 10 24 84 69 33 27 25 51 chain 12125 chr3 198022430 + 96790876 96791028 L1PB1 5432 + 4954 5113 151711 144 0 7 8 chain 116183 chr3 198022430 + 96796248 96797602 L1PA6 6164 - 12 1362 32381 140 8 4 1206 chain 17920 chr3 198022430 + 96814083 96814293 L1PA5 6144 + 5921 6132 133057 171 0 1 39 chain 7015 chr3 198022430 + 96856616 96856699 L1PA5 6144 + 6061 6144 177359 83 chain 47854 chr3 198022430 + 96877296 96877892 PRIMA4_LTR 623 - 0 623 60588 237 0 2 32 0 1 88 4 5 60 0 23 175 chain 4109 chr3 198022430 + 96887508 96887555 MSTA 426 + 251 298 205784 47 chain 14684 chr3 198022430 + 96888738 96888973 L1PA8 5853 + 5621 5853 142311 56 28 27 36 2 1 19 1 0 93 chain 160936 chr3 198022430 + 96903217 96905058 L1PA4 6152 + 4298 6143 23205 1155 1 4 360 1 2 324 chain 14028 chr3 198022430 + 96909563 96909720 L1PA2 6032 + 5872 6028 144467 4 1 0 152 chain 10816 chr3 198022430 + 96922711 96922836 L1PA3long 6157 + 6031 6156 156912 125 chain 2952 chr3 198022430 + 96983839 96983871 MER52D 1964 - 828 860 226054 32 chain 29460 chr3 198022430 + 96991312 96991707 LTR7 482 - 6 482 86793 168 1 2 12 0 31 38 0 1 3 0 10 96 8 46 69 chain 202006 chr3 198022430 + 96993513 96995998 HERVH-int 3825 - 0 2711 19064 458 37 247 314 1 0 570 0 1 435 1 0 84 5 31 83 0 4 65 0 1 62 1 0 41 16 1 48 0 12 139 15 0 37 0 5 73 chain 23408 chr3 198022430 + 96996002 96996394 LTR7 482 - 29 482 113605 192 18 40 38 0 51 17 15 14 15 30 18 21 1 2 45 chain 13568 chr3 198022430 + 97002425 97002615 L1PA8 5853 + 5667 5852 146098 14 1 0 7 2 0 51 3 2 19 1 0 92 chain 40334 chr3 198022430 + 97022687 97023176 L1PA10 4194 - 196 685 68826 4 0 1 349 2 1 134 chain 158772 chr3 198022430 + 97047667 97049422 L1PA4 6152 - 6 1761 23478 1755 chain 174276 chr3 198022430 + 97049422 97051396 L1PA4 6152 + 2319 4283 21567 649 6 4 280 0 4 292 12 0 735 chain 3291 chr3 198022430 + 97053862 97053901 MLT1A 405 - 23 62 219160 39 chain 81154 chr3 198022430 + 97090125 97091158 MER11C 1089 + 0 1066 43110 219 0 1 47 0 3 49 1 18 217 44 45 176 0 8 129 0 3 151 chain 14150 chr3 198022430 + 97155796 97156003 MER30 238 + 10 229 144038 15 4 11 53 0 1 25 4 10 72 3 0 10 0 1 21 chain 11499 chr3 198022430 + 97181952 97182082 L1PA5 6144 - 6 136 154306 130 chain 83325 chr3 198022430 + 97199075 97200021 SVA_B 1603 - 1 1267 42190 115 1 0 451 1 162 18 0 80 25 0 80 335 chain 519142 chr3 198022430 + 97224044 97230484 L1PA7 6471 - 10 6471 5249 152 0 1 444 0 3 168 1 0 76 0 3 120 0 1 327 9 10 20 0 5 7 7 2 143 8 20 247 13 14 16 7 11 177 0 1 15 0 1 393 9 10 81 0 2 65 1 0 97 0 2 182 0 1 38 3 2 107 16 13 114 0 1 147 0 1 121 0 4 12 0 1 220 0 1 213 37 8 37 0 1 1266 1 4 166 0 1 110 2 3 229 1 0 209 1 0 20 0 13 179 3 0 403 chain 14617 chr3 198022430 + 97232072 97232458 L1MA6 2487 + 2111 2401 142527 116 54 17 33 2 0 11 104 51 38 3 0 20 1 0 4 chain 23019 chr3 198022430 + 97240166 97240550 THE1C 375 - 0 373 115534 26 1 0 129 54 51 25 15 7 124 0 1 10 chain 16493 chr3 198022430 + 97260682 97260918 MLT2A1 477 - 0 270 136951 20 1 0 33 3 39 7 2 0 73 11 12 86 chain 534361 chr3 198022430 + 97260949 97267055 L1PA4 6152 - 12 6149 3671 156 8 6 866 0 1 759 0 4 708 0 1 323 3 31 120 1 0 280 1 0 40 0 1 664 0 1 1141 1 0 4 0 1 457 0 3 111 20 15 365 0 1 78 chain 90558 chr3 198022430 + 97273776 97274782 L1PA3long 6157 - 0 1010 39452 338 0 1 272 0 3 396 chain 7182 chr3 198022430 + 97292438 97292517 L1PA2 6032 - 2 81 176194 79 chain 2947 chr3 198022430 + 97298636 97298667 U2 167 + 0 31 226117 31 chain 207791 chr3 198022430 + 97317108 97319353 L1PA2 6032 - 0 2246 18656 1725 0 1 520 chain 387294 chr3 198022430 + 97360271 97364522 L1PA2 6032 + 0 6032 10543 154 1 0 62 0 2 1244 1 0 802 0 4 870 0 1 344 0 1 177 0 1774 7 0 1 589 chain 21479 chr3 198022430 + 97374299 97374535 L1PA4 6152 - 327 563 122222 236 chain 18781 chr3 198022430 + 97374535 97374752 L1PA4 6152 + 5928 6143 130731 50 3 1 164 chain 92526 chr3 198022430 + 97382184 97383222 L1PA5 6144 - 4 1042 38809 1038 chain 92804 chr3 198022430 + 97383222 97384273 L1PA5 6144 + 4039 5092 38709 456 0 3 478 2 1 115 chain 26904 chr3 198022430 + 97407258 97407578 L1PA5 6144 + 5817 6144 96612 63 1 7 205 0 1 51 chain 22085 chr3 198022430 + 97435792 97436094 AluSq2 311 + 20 303 119867 60 24 5 218 chain 26111 chr3 198022430 + 97472928 97473220 AluSp 311 - 8 300 99572 292 chain 32339 chr3 198022430 + 97491869 97492315 MLT2A1 477 - 0 477 80288 53 3 39 13 3 0 61 0 1 101 3 4 30 12 7 41 0 1 126 chain 128667 chr3 198022430 + 97492315 97494049 HERVL-int 5654 - 0 5654 28404 17 0 10 263 0 3 131 29 10 61 1 2 167 0 2 38 0 3956 101 0 1 7 61 25 209 1 0 163 7 10 478 chain 18898 chr3 198022430 + 97494049 97494375 MLT2A1 477 - 0 346 130375 43 19 49 16 3 0 58 5 6 108 5 2 20 12 7 37 chain 10437 chr3 198022430 + 97494381 97494500 MLT2A1 477 - 358 477 158540 119 chain 8884 chr3 198022430 + 97496176 97496470 MER2 342 - 25 342 166213 15 36 40 82 2 1 29 112 132 18 chain 3823 chr3 198022430 + 97515336 97515383 HAL1 992 + 124 171 210032 47 chain 126734 chr3 198022430 + 97520559 97521981 L1PA5 6144 - 2 1423 28872 7 3 0 9 1 0 448 0 4 239 1 0 714 chain 133914 chr3 198022430 + 97550936 97552573 L1PA7 6471 + 4845 6470 27234 110 2 1 23 11 0 560 0 1 74 0 3 153 3 5 363 0 1 158 18 7 12 1 5 37 0 1 90 1 0 21 chain 37673 chr3 198022430 + 97571872 97572694 L1PB1 5432 - 6 726 72580 22 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 18 18 15 11 14 3 37 5 6 15 2 1 51 19 13 12 1 0 6 1 0 23 3 0 7 61 10 16 1 4 234 1 0 5 87 68 10 1 0 55 chain 75185 chr3 198022430 + 97574450 97575499 MER11C 1089 - 26 1089 45932 134 10 9 24 0 1 29 0 1 123 7 8 35 1 0 5 0 4 14 1 0 93 52 51 146 1 0 65 0 4 30 10 9 23 6 15 240 chain 26046 chr3 198022430 + 97586853 97587144 AluYk4 311 + 8 298 99844 124 1 0 166 chain 543257 chr3 198022430 + 97623584 97629615 L1PA3long 6157 - 0 6157 2304 271 5 0 4980 1 129 624 0 1 7 0 1 73 0 1 70 chain 103581 chr3 198022430 + 97641018 97642194 L1PA5 6144 + 4969 6142 35837 312 0 1 853 4 0 7 chain 3206 chr3 198022430 + 97654892 97655031 MER58A 224 - 13 159 220847 26 87 94 26 chain 8890 chr3 198022430 + 97709602 97709757 L1MB2 1706 + 1548 1687 166183 28 21 7 15 1 0 13 1 0 76 chain 40259 chr3 198022430 + 97762278 97762768 MER9a1 513 - 0 513 68932 160 1 2 82 3 25 244 chain 30460 chr3 198022430 + 97770601 97771147 L1PB1 5432 + 4922 5423 83513 181 21 13 20 1 0 10 2 1 9 2 0 3 2 0 9 2 0 52 2 1 16 1 0 44 1 0 15 23 12 18 33 21 23 1 0 22 1 0 12 1 0 19 chain 7607 chr3 198022430 + 97796710 97796810 L1PB 1623 - 348 447 173497 84 0 1 9 2 0 5 chain 498652 chr3 198022430 + 97808948 97815401 L1PA6 6164 - 2 6164 6918 272 2 0 229 0 8 258 0 1 79 0 1 78 1 4 344 0 9 238 1 0 95 0 4 314 0 1 216 1 4 52 0 1 17 0 1 6 1 0 335 0 3 286 1 0 116 5 6 120 325 0 575 0 1 78 1 2 70 15 4 406 0 1 438 0 1 485 0 4 182 1 18 112 1 0 10 10 5 103 7 6 11 0 4 99 8 0 449 chain 205549 chr3 198022430 + 97830464 97833400 MER61-int 3695 + 745 3695 18821 23 0 2 85 10 8 47 27 30 180 4 9 165 0 1 92 9 13 133 0 1 10 32 30 64 12 17 56 1 0 61 28 17 339 7 4 4 1 0 24 0 19 432 1 0 4 14 1 111 46 51 85 1 0 37 1 0 250 2 1 160 0 13 30 9 8 293 6 0 40 chain 3109 chr3 198022430 + 97860505 97860544 LTR8 732 + 652 692 222756 31 0 1 8 chain 68955 chr3 198022430 + 97870681 97871649 L1PA8 5853 + 4880 5853 48832 130 2 0 60 26 29 155 0 1 309 1 0 44 2 0 67 7 6 7 1 0 8 1 0 9 1 2 37 1 0 16 1 0 51 1 11 31 chain 47059 chr3 198022430 + 97883925 97884499 LTR22 571 - 0 570 61158 123 0 1 188 1 0 4 2 0 4 2 0 250 chain 541846 chr3 198022430 + 97892927 97899089 L1PA4 6152 + 0 6151 2532 577 1 0 259 17 0 642 0 1 1483 0 1 207 0 1 294 0 3 840 0 1 1842 chain 6962 chr3 198022430 + 97903999 97904093 LTR9B 643 - 545 638 177733 25 1 0 68 chain 7609 chr3 198022430 + 97904542 97904666 HUERS-P3b-int 2065 - 208 327 173488 37 11 8 7 1 0 3 1 0 64 chain 242527 chr3 198022430 + 97910308 97914234 HERVH-int 3825 + 0 3825 16636 319 14 13 78 16 15 25 37 40 12 49 249 4 0 1 22 133 0 55 0 3 196 1 3 191 48 21 184 9 0 147 15 10 198 12 9 5 0 3 149 1 36 8 0 2 60 36 53 147 9 24 371 0 1 22 0 1 62 0 1 4 92 93 119 178 14 46 4 3 154 0 3 227 4 0 31 4 7 5 3 0 48 0 2 109 1 0 17 0 10 56 1 0 54 53 1 18 0 1 63 chain 56966 chr3 198022430 + 97918562 97919317 L1PA8 5853 + 5095 5846 54551 157 0 1 311 1 0 44 2 0 70 2 1 9 1 0 11 4 5 36 2 1 19 1 0 51 0 1 34 chain 71183 chr3 198022430 + 97931617 97932655 MER11C 1089 + 0 1063 47853 247 0 9 61 0 4 63 2 1 149 70 68 83 6 10 4 1 0 10 0 1 27 0 1 95 31 32 55 1 0 42 1 11 90 chain 21763 chr3 198022430 + 97943364 97943609 L1PA5 6144 - 0 245 121160 245 chain 10972 chr3 198022430 + 97962588 97962717 L1PREC2 3366 + 2396 2525 156313 129 chain 5031 chr3 198022430 + 97965989 97966046 L1PA4 6152 - 16 73 194815 57 chain 72295 chr3 198022430 + 97970944 97971898 L1PA8 5853 + 4896 5848 47335 113 6 4 29 0 6 16 0 1 497 1 0 46 2 0 62 19 19 6 1 0 6 4 3 39 1 0 17 1 0 88 chain 64497 chr3 198022430 + 97973286 97974164 MER11A 1151 - 0 1151 50802 167 0 1 16 1 0 21 21 30 33 17 48 91 0 137 35 2 3 30 0 1 94 0 1 115 0 2 32 4 0 60 0 4 54 0 91 85 chain 96386 chr3 198022430 + 98013283 98014358 L1PA3long 6157 + 5082 6157 37706 1075 chain 92056 chr3 198022430 + 98029466 98030545 MER11C 1089 - 16 1089 38955 144 5 0 40 1 0 289 0 1 21 6 5 573 chain 72619 chr3 198022430 + 98034982 98035960 LTR5B 1012 - 6 1012 47204 414 8 9 28 1 0 8 1 2 56 1 0 36 15 23 62 2 8 203 0 1 10 0 13 133 chain 3422 chr3 198022430 + 98035960 98036004 MER2 342 - 168 212 216720 44 chain 46198 chr3 198022430 + 98046386 98046963 LTR10C 591 - 0 591 61850 20 0 2 59 8 10 55 5 15 430 chain 24359 chr3 198022430 + 98058763 98059101 THE1B 368 + 0 347 108325 44 0 15 112 11 10 18 4 0 94 1 0 54 chain 86689 chr3 198022430 + 98081398 98082404 LTR5A 1029 - 0 1028 40883 116 1 0 681 0 9 76 0 13 123 0 1 9 chain 84849 chr3 198022430 + 98084846 98086122 MER4-int 2692 + 86 1349 41573 13 2 0 3 3 0 12 0 2 35 0 1 4 1 0 15 0 1 153 9 11 26 5 0 177 0 9 38 10 11 63 1 0 4 12 13 38 1 2 40 1 9 146 2 0 189 13 14 38 1 0 7 14 13 25 24 0 151 chain 13131 chr3 198022430 + 98086185 98086362 MER4A1 472 + 288 469 147720 6 0 2 103 4 6 64 chain 27034 chr3 198022430 + 98092116 98092415 AluYf4 310 - 9 308 96166 299 chain 292084 chr3 198022430 + 98096794 98100021 L1PA3long 6157 - 0 3226 13895 375 0 1 2085 1 0 404 1 0 361 chain 40495 chr3 198022430 + 98115592 98116040 LTR7 482 + 0 482 68596 247 0 31 179 0 3 22 chain 529688 chr3 198022430 + 98125430 98131569 L1PA4 6152 + 1 6152 4221 127 0 14 31 2 0 407 1 0 250 20 3 138 0 1 67 1 4 2777 0 1 991 1 0 492 0 4 84 0 1 22 0 6 353 0 1 309 0 2 66 chain 140194 chr3 198022430 + 98135861 98137504 L1PA6 6164 - 4 1651 26115 108 1 0 70 0 2 4 1 0 18 0 3 670 0 1 771 chain 394652 chr3 198022430 + 98141050 98146654 L1PB1 5432 + 33 5420 10295 72 20 23 209 18 16 156 30 29 5 0 2 7 0 1 395 0 14 235 17 21 126 15 16 43 31 0 139 1 0 44 9 0 118 5 0 66 27 0 93 24 7 220 0 1 4 1 0 279 0 4 47 6 0 76 1 0 17 2 3 321 2 0 64 0 1 340 3 4 31 0 2 294 10 0 4 7 0 154 0 1 57 1 0 168 1 0 383 0 1 19 0 3 84 1 0 174 7 0 72 0 2 8 0 1 94 2 3 167 0 1 63 9 10 5 1 0 11 17 0 41 94 10 24 1 0 9 2 1 10 4 0 11 2 0 50 1 0 18 2 1 42 1 0 16 3 0 6 16 6 10 12 10 4 1 0 11 4 3 24 1 0 21 1 0 13 1 0 16 chain 24772 chr3 198022430 + 98161146 98161444 AluYc3 301 - 3 301 106050 183 1 2 11 6 5 97 chain 73017 chr3 198022430 + 98167481 98168392 L1PA8A 6298 + 5339 6247 47018 39 0 2 142 0 1 56 0 1 46 0 1 296 1 0 254 7 0 70 chain 27612 chr3 198022430 + 98170645 98170960 AluY 311 + 0 311 94317 123 2 0 3 2 0 185 chain 31737 chr3 198022430 + 98178284 98178859 L1PA13 3608 - 60 626 81265 13 1 0 14 6 0 3 1 0 16 6 1 10 6 3 20 1 0 20 8 4 42 8 6 10 1 0 24 1 0 26 1 0 63 2 0 23 16 18 73 1 0 27 1 0 25 8 20 13 0 3 60 1 5 24 chain 193960 chr3 198022430 + 98184745 98186851 L1PA2 6032 - 4 2110 19681 2106 chain 285331 chr3 198022430 + 98196857 98200353 L1PA7 6471 - 35 3567 14334 128 1 0 168 0 1 122 13 7 117 0 1 188 1 4 27 1 0 54 2 0 172 4 5 87 5 2 418 0 2 923 6 1 427 1 2 77 0 1 271 15 3 78 0 56 190 chain 9936 chr3 198022430 + 98236421 98236599 MER2 342 + 137 323 160893 87 4 5 33 29 36 25 chain 3106 chr3 198022430 + 98269488 98269544 MER53 195 - 30 87 222812 16 10 11 30 chain 3258 chr3 198022430 + 98285690 98285727 MLT2B4 540 + 503 540 219809 37 chain 75918 chr3 198022430 + 98288012 98288888 L1PA6 6164 - 5 889 45528 9 0 5 65 1 0 764 0 4 37 chain 20792 chr3 198022430 + 98294979 98295347 THE1D 372 - 12 372 124639 84 0 1 50 1 0 25 33 34 58 25 28 6 3 0 19 9 0 55 chain 31326 chr3 198022430 + 98322900 98323247 L1PA3long 6157 - 11 358 81947 347 chain 147684 chr3 198022430 + 98329368 98331694 L1PBa 3878 - 1687 3713 24923 129 0 4 365 6 0 72 11 0 159 1 24 451 6 7 159 0 1 116 322 0 87 2 0 5 27 1 89 1 0 5 0 1 44 2 1 155 55 95 8 1 0 48 chain 11292 chr3 198022430 + 98348109 98348275 MLT2A1 477 - 0 203 155083 23 0 1 13 5 0 3 1 0 7 3 45 111 chain 189009 chr3 198022430 + 98348277 98350686 HERVL-int 5654 - 3181 5635 20146 139 0 1 302 11 27 135 6 7 129 7 9 47 1 0 4 0 1 82 14 15 557 8 9 32 0 2 35 0 1 52 5 6 6 0 5 461 0 1 62 0 3 248 1 10 15 0 1 50 chain 31095 chr3 198022430 + 98350710 98351157 MLT2A1 477 - 0 477 82350 37 21 55 69 23 20 92 0 1 23 0 1 8 3 0 171 chain 10051 chr3 198022430 + 98356613 98356862 L1PB1 5432 - 36 263 160315 4 1 0 22 1 0 13 36 31 15 9 0 15 3 0 16 2 1 23 20 19 18 1 0 50 chain 37286 chr3 198022430 + 98361571 98362046 LTR2B 499 - 0 490 73105 182 1 0 7 5 6 174 0 19 40 3 0 57 1 0 5 chain 501731 chr3 198022430 + 98400869 98406855 L1PA7 6471 + 453 6464 6740 11 0 1 8 1 0 740 0 5 1301 0 2 63 22 26 106 0 4 122 0 1 23 0 2 610 1 0 71 0 4 53 1 0 55 0 1 94 0 3 632 1 2 272 0 4 654 0 1 4 1 0 215 2 1 78 2 0 5 1 0 837 chain 22389 chr3 198022430 + 98417409 98417705 AluSc8 310 + 4 296 118545 129 0 2 143 12 6 12 chain 23891 chr3 198022430 + 98422946 98423259 AluSp 311 - 0 297 110953 183 19 3 111 chain 54305 chr3 198022430 + 98427470 98428164 LTR30 714 - 10 714 56156 13 1 0 64 1 3 130 7 3 19 0 1 178 11 18 21 6 11 243 chain 39102 chr3 198022430 + 98432081 98432564 LTR10F 562 - 0 562 70597 295 3 1 35 3 84 147 chain 8599 chr3 198022430 + 98456621 98456733 L1PREC2 3366 + 359 470 167737 41 1 0 70 chain 29051 chr3 198022430 + 98500001 98500332 L1PA7 6471 + 6139 6470 88756 331 chain 292163 chr3 198022430 + 98520548 98523821 L1PA5 6144 - 147 3435 13888 701 0 2 218 7 13 489 0 1 228 0 4 666 1 0 519 0 2 50 0 1 394 chain 9458 chr3 198022430 + 98523821 98523928 U6 107 - 0 107 163283 107 chain 78523 chr3 198022430 + 98550194 98551388 L1PREC2 3366 - 2015 3227 44257 6 0 5 30 1 6 5 1 0 70 1 0 21 5 8 64 0 3 9 0 4 99 1 0 47 1 0 5 13 24 27 4 3 82 0 3 78 1 0 5 1 2 256 0 1 19 0 3 61 1 0 83 0 1 35 1 0 26 2 0 3 1 0 12 1 0 13 2 1 16 21 15 20 2 0 10 7 6 25 chain 131151 chr3 198022430 + 98555303 98557868 SVA_F 1814 - 370 1803 27824 170 1 0 61 744 0 251 0 15 44 402 0 892 chain 2693 chr3 198022430 + 98555535 98555563 SVA_F 1814 - 777 805 163435 28 chain 8976 chr3 198022430 + 98555564 98555682 SVA_F 1814 - 629 775 113485 98 0 1 5 11 38 4 chain 6181 chr3 198022430 + 98555682 98555936 SVA_F 1814 - 600 852 69964 209 1 0 11 1 0 32 chain 11556 chr3 198022430 + 98555958 98556085 SVA_F 1814 - 600 727 154080 127 chain 5015 chr3 198022430 + 98556085 98556137 SVA_F 1814 - 869 921 194973 52 chain 10189 chr3 198022430 + 98556154 98556259 SVA_F 1814 - 698 803 159678 105 chain 15733 chr3 198022430 + 98556574 98556827 SVA_F 1814 - 720 987 66288 128 3 18 55 1 0 12 0 1 25 1 0 28 chain 998 chr3 198022430 + 98556833 98556874 SVA_F 1814 - 1153 1194 69964 41 chain 4264 chr3 198022430 + 98556874 98556928 SVA_F 1814 - 794 848 92037 54 chain 119908 chr3 198022430 + 98575794 98577332 LTR12C 1709 - 0 1709 31086 82 1 0 326 1 0 20 14 0 50 14 7 14 29 5 49 0 47 195 0 4 56 0 118 271 0 2 69 9 56 338 chain 521422 chr3 198022430 + 98577674 98583708 L1PA5 6144 + 3 6144 5014 92 1 83 127 2 0 114 0 1 485 0 1 1633 1 0 460 0 1 244 0 3 239 0 4 394 1 0 586 1 6 10 0 3 169 5 6 404 0 6 223 0 4 843 chain 155045 chr3 198022430 + 98584564 98586295 L1PA5 6144 - 5 1748 23975 49 1 5 784 0 4 807 0 4 90 chain 62110 chr3 198022430 + 98601265 98602062 L1PA6 6164 - 2 793 51848 8 12 0 7 0 3 34 7 11 632 3 2 35 0 1 31 9 8 19 chain 181550 chr3 198022430 + 98627408 98629811 L1PA11 4918 + 1111 4390 20842 304 3 0 8 0 4 776 7 5 9 0 3 60 1 4 17 3 7 10 15 17 112 13 11 111 18 32 227 0 852 50 0 3 56 0 1 165 4 0 82 0 2 292 7 6 53 chain 140045 chr3 198022430 + 98650537 98652146 L1PA5 6144 - 6 1624 26139 135 1 0 4 1 5 346 0 1 355 1 2 219 0 6 443 2 0 102 chain 27667 chr3 198022430 + 98667676 98668069 L1PBa 3878 - 1571 1962 94160 219 25 15 108 13 21 28 chain 64667 chr3 198022430 + 98669349 98670124 L1PA7 6471 + 5678 6461 50710 31 0 1 427 0 3 181 0 1 5 1 0 19 4 8 107 chain 29306 chr3 198022430 + 98671998 98672375 MLT2A1 477 + 0 381 87543 116 1 0 26 0 1 20 6 10 208 chain 9734 chr3 198022430 + 98695632 98695768 MER50 708 - 109 251 161914 96 1 0 7 5 12 27 chain 70283 chr3 198022430 + 98706448 98707221 L1PA3long 6157 + 5385 6157 48277 438 0 1 328 2 0 5 chain 44692 chr3 198022430 + 98724604 98725097 L1PA3long 6157 - 0 493 63385 493 chain 4684 chr3 198022430 + 98727922 98727978 MSTB-int 1649 - 0 56 198707 56 chain 37954 chr3 198022430 + 98747298 98747731 L1PA4 6152 + 5715 6152 72204 286 0 1 132 2 0 7 0 5 6 chain 536218 chr3 198022430 + 98753632 98759776 L1PA4 6152 + 0 6151 3417 59 6 9 392 6 0 120 1 0 1130 1 0 1075 0 2 471 1 6 448 1 0 1011 0 1 356 0 5 99 1 0 910 0 1 56 chain 3735 chr3 198022430 + 98763790 98763831 L1PB4 2604 - 2507 2548 211383 41 chain 545129 chr3 198022430 + 98777525 98783653 L1PA3long 6157 - 14 6147 2059 133 1 3 982 0 1 3562 0 1 14 2 1 490 0 1 441 1 2 502 chain 32752 chr3 198022430 + 98792134 98792516 L1PA4 6152 - 0 404 79612 6 0 5 9 0 4 123 1 14 243 chain 85491 chr3 198022430 + 98792516 98793508 L1P1 4361 - 3369 4360 41347 512 6 5 474 chain 31832 chr3 198022430 + 98842298 98842735 MLT2A1 477 - 0 477 81121 40 2 0 17 0 43 172 1 2 20 0 1 12 4 1 169 chain 8751 chr3 198022430 + 98851667 98851760 L1PA3long 6157 - 0 93 166919 93 chain 187637 chr3 198022430 + 98851760 98853853 L1PA3long 6157 + 3958 6049 20277 97 8 0 264 0 1 1039 0 1 512 0 3 139 0 1 34 chain 30330 chr3 198022430 + 98855581 98856117 L1PB1 5432 - 10 513 83843 18 1 0 13 5 4 17 1 0 24 2 0 14 12 9 15 28 17 9 1 0 45 1 0 18 1 0 51 2 0 9 2 0 3 2 0 12 3 2 4 1 0 25 1 0 5 8 5 101 0 1 82 chain 46799 chr3 198022430 + 98856557 98857104 L1PA4 6152 - 1 561 61371 97 10 22 126 0 1 314 chain 249350 chr3 198022430 + 98857104 98860036 L1P1 4361 - 1435 4360 16290 619 1 0 354 0 1 472 1 2 29 6 2 389 0 2 482 1 0 113 17 11 89 0 1 359 chain 25457 chr3 198022430 + 98888187 98888551 L1PA11 4918 - 443 807 102427 67 1 2 12 2 1 12 0 1 39 14 13 217 chain 19971 chr3 198022430 + 98893279 98893511 L1PA4 6152 - 1 239 127230 17 0 1 133 0 5 82 chain 15213 chr3 198022430 + 98893511 98893777 L1PA15 4387 + 4106 4356 140573 24 1 0 55 1 0 22 4 0 7 12 11 42 9 6 41 3 1 11 4 0 30 chain 22683 chr3 198022430 + 98921487 98921747 L1PA3long 6157 + 5747 6008 117149 253 0 1 7 chain 13362 chr3 198022430 + 98921747 98921893 L1PA3long 6157 + 6011 6157 146842 146 chain 13349 chr3 198022430 + 98929185 98929356 MER30 238 - 0 189 146885 103 8 26 60 chain 8144 chr3 198022430 + 98956214 98956330 MER47A 366 - 125 242 170267 52 4 5 60 chain 156391 chr3 198022430 + 98962786 98964567 L1PA5 6144 + 4357 6144 23813 1093 0 4 73 1 2 283 0 1 331 chain 229038 chr3 198022430 + 98979405 98982383 HERVL-int 5654 - 479 5654 17356 56 6 0 32 0 1 180 0 3 64 0 1 193 0 1 329 0 1 139 0 665 125 3 17 56 2 1242 7 0 1 228 13 13 180 0 2 65 14 3 251 23 0 309 5 317 327 6 2 365 chain 30510 chr3 198022430 + 98982522 98982911 MLT2A1 477 - 94 477 83407 10 3 0 203 4 1 169 chain 479863 chr3 198022430 + 98991523 99013146 L1PA3long 6157 - 1 5828 7733 5 3 0 49 0 4 1258 15921 0 2521 3 0 603 1 0 812 8 136 439 chain 68330 chr3 198022430 + 98993001 98993766 L1PA3long 6157 - 1481 2248 49111 215 0 3 147 1 0 402 chain 7214 chr3 198022430 + 98993766 98993846 L1PA3long 6157 + 3814 3894 175979 80 chain 3623 chr3 198022430 + 99000816 99000958 L1MA1 4479 + 4085 4186 213291 22 2 0 19 68 38 8 9 0 14 chain 112706 chr3 198022430 + 99015935 99017201 L1PA3long 6157 + 4883 6153 33477 567 4 0 422 0 3 19 0 5 254 chain 414576 chr3 198022430 + 99020629 99025498 L1PA6 6164 + 1283 6159 9679 541 2 1 215 6 2 282 2 1 864 0 1 692 13 14 1418 0 8 182 0 3 319 0 1 176 15 16 135 2 0 5 chain 100263 chr3 198022430 + 99028490 99030225 L1PA14 3548 + 1956 3467 36701 139 0 1 13 21 22 36 0 1 4 1 0 308 0 1 54 2 1 153 1 0 243 13 10 49 17 14 109 8 4 13 2 0 6 1 0 4 1 0 6 0 1 6 2 1 66 1 0 83 255 45 30 4 2 12 1 0 3 1 0 19 1 0 41 0 5 6 chain 13184 chr3 198022430 + 99029857 99030061 L1PA14 3548 + 2890 3089 147533 48 3 1 50 19 16 84 chain 37906 chr3 198022430 + 99047305 99047752 L1PA5 6144 - 6 452 72277 144 0 5 7 6 1 96 1 0 193 chain 92172 chr3 198022430 + 99079885 99080906 L1PA3long 6157 - 2144 3165 38830 1021 chain 131209 chr3 198022430 + 99080906 99082392 L1PA3long 6157 + 4007 6157 27815 689 5 663 668 15 21 109 chain 5417 chr3 198022430 + 99085650 99085730 MADE1 96 - 0 96 190825 30 2 18 48 chain 74262 chr3 198022430 + 99088761 99090985 HSMAR1 1287 - 29 1287 46379 321 25 28 9 0 2 78 0 25 157 26 29 22 1 4 5 3 0 21 1184 185 372 chain 54586 chr3 198022430 + 99089945 99090528 L1PA2 6032 - 11 594 55977 583 chain 18963 chr3 198022430 + 99098903 99099122 L1PA5 6144 + 5922 6141 130197 219 chain 65331 chr3 198022430 + 99099339 99100128 L1PA7 6471 + 5676 6467 50409 460 0 1 183 5 6 141 chain 13293 chr3 198022430 + 99116751 99116945 THE1C 375 - 200 375 147119 45 10 0 5 9 0 125 chain 3926 chr3 198022430 + 99153977 99154024 L1PA2 6032 - 0 46 208469 15 1 0 31 chain 479044 chr3 198022430 + 99169580 99175044 L1PA4 6152 + 697 6152 7764 419 1 0 353 0 4 1121 0 1 764 2 0 1048 12 1 616 0 1 867 1 0 260 chain 77797 chr3 198022430 + 99195303 99196242 L1PA7 6471 - 7 954 44617 454 5 7 374 0 6 106 chain 23514 chr3 198022430 + 99210898 99211215 THE1C 375 - 40 359 113051 138 7 8 103 5 6 64 chain 33096 chr3 198022430 + 99211234 99211775 L1MA1 4479 + 3610 4142 79058 32 20 22 22 2 1 28 1 0 24 2 0 16 1 0 71 1 0 19 2 0 14 1 0 62 9 8 18 8 4 71 0 5 79 3 1 35 chain 11830 chr3 198022430 + 99233244 99233378 L1PA4 6152 + 6009 6143 152905 134 chain 13294 chr3 198022430 + 99260867 99261013 LTR13 1007 + 0 146 147115 146 chain 13985 chr3 198022430 + 99277838 99277995 L1PA5 6144 - 5 162 144628 157 chain 4012 chr3 198022430 + 99284220 99284266 L1PA16 3655 + 3158 3204 207209 46 chain 41580 chr3 198022430 + 99300861 99301504 L1MA1 4479 + 2626 3247 67186 43 1 0 48 1 0 54 3 1 18 2 0 14 1 0 29 5 0 33 2 0 5 6 7 80 1 0 26 14 12 162 8 6 14 14 10 59 chain 501862 chr3 198022430 + 99307890 99313833 L1PA6 6164 + 169 6150 6733 42 0 1 106 0 2 198 0 2 47 1 0 1765 0 2 625 0 2 53 0 8 160 6 8 33 10 9 58 1 0 366 1 4 73 8 9 625 1 5 39 0 2 236 1 0 24 0 1 80 0 4 390 0 1 166 0 5 235 8 10 585 chain 217915 chr3 198022430 + 99322649 99325139 L1PA4 6152 - 9 2502 18007 4 1 0 100 0 1 33 4 5 108 1 0 1011 0 3 36 1 0 166 5 6 1020 chain 3125 chr3 198022430 + 99327370 99327404 LTR16A1 462 - 1 35 222458 34 chain 22993 chr3 198022430 + 99344491 99344859 L1M1 2793 + 766 1122 115652 6 2 0 25 2 1 33 2 0 8 5 4 50 26 22 73 1 0 15 1 0 119 chain 44934 chr3 198022430 + 99372678 99373227 MLT2A2 560 - 0 560 63132 147 3 14 399 chain 66966 chr3 198022430 + 99398841 99399579 L1PA5 6144 - 0 738 49664 738 chain 54994 chr3 198022430 + 99399580 99400208 L1PA5 6144 + 4730 5356 55707 564 2 0 62 chain 4984 chr3 198022430 + 99410294 99410346 MER5A1 166 + 1 53 195320 52 chain 29481 chr3 198022430 + 99415820 99416128 AluYa5 310 - 1 309 86707 308 chain 50051 chr3 198022430 + 99416665 99417251 L1PA6 6164 - 3 588 58982 10 1 0 575 chain 3862 chr3 198022430 + 99419079 99419121 L1PA8A 6298 + 6248 6290 209427 42 chain 180233 chr3 198022430 + 99444262 99446311 L1PA4 6152 - 1 2055 20971 11 0 1 247 0 1 588 1 5 669 1 0 532 chain 59085 chr3 198022430 + 99446495 99447146 L1P1 4361 + 3642 4292 53343 512 1 0 138 chain 30135 chr3 198022430 + 99451136 99451515 THE1C 375 - 0 375 84366 25 1 0 90 3 0 260 chain 31625 chr3 198022430 + 99451515 99451944 THE1C-int 1605 - 0 432 81441 258 1 0 5 1 2 26 14 17 124 chain 536867 chr3 198022430 + 99451990 99458087 L1PA3long 6157 - 0 6151 3329 15 6 2 3217 79 0 132 2 1 648 0 5 193 0 1 235 0 1 458 0 1 342 7 135 29 0 1 588 0 1 146 chain 6605 chr3 198022430 + 99455233 99455307 L1PA3long 6157 - 5 79 180419 74 chain 10787 chr3 198022430 + 99490945 99491307 L1MC1 2226 + 1844 2198 157045 12 0 3 28 21 15 15 1 0 34 0 1 7 28 39 39 107 92 7 1 0 16 1 0 27 3 4 15 chain 44031 chr3 198022430 + 99495423 99496034 MER41B 635 - 0 620 64165 68 13 18 81 22 21 33 0 3 106 0 2 176 3 4 31 1 0 77 chain 24275 chr3 198022430 + 99502393 99502776 THE1D 372 - 2 372 108812 176 36 18 15 0 1 28 29 33 99 chain 50457 chr3 198022430 + 99560490 99561317 L1PB1 5432 + 4629 5422 58676 11 1 0 164 1 0 79 4 7 122 8 6 85 1 2 8 4 1 20 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 4 3 41 8 7 8 2 0 6 17 7 17 3 1 5 1 0 14 3 1 23 8 7 14 1 0 13 1 0 18 chain 16113 chr3 198022430 + 99562655 99562890 MER1B 344 + 89 327 138016 127 4 0 20 3 5 35 5 10 41 chain 9970 chr3 198022430 + 99563739 99563871 THE1D 372 + 238 370 160728 38 1 0 62 0 1 31 chain 24679 chr3 198022430 + 99571287 99571578 AluSc5 308 - 8 299 106558 291 chain 21742 chr3 198022430 + 99643388 99643665 AluSp 311 - 38 311 121235 135 10 6 132 chain 17127 chr3 198022430 + 99697105 99697349 L1MA5 2750 + 2414 2654 135240 148 1 0 50 1 0 19 6 5 10 1 0 8 chain 123695 chr3 198022430 + 99713823 99715390 THE1A-int 1579 - 0 1579 29816 66 0 1 38 4 5 471 12 17 324 0 1 4 6 8 11 0 3 5 3 0 442 11 12 36 0 1 134 chain 28079 chr3 198022430 + 99715390 99715743 THE1A 353 - 0 353 92716 259 1 0 46 0 1 47 chain 3544 chr3 198022430 + 99717018 99717057 MADE1 96 + 57 96 214649 39 chain 3612 chr3 198022430 + 99762783 99762864 L1MA7 2200 - 289 371 213450 40 28 29 13 chain 37921 chr3 198022430 + 99770214 99770648 L1PA4 6152 - 13 448 72248 320 1 2 113 chain 25882 chr3 198022430 + 99775561 99775860 AluY 311 + 0 295 100516 52 5 0 80 0 1 162 chain 27981 chr3 198022430 + 99785364 99785657 AluYa5 310 - 0 293 93065 293 chain 7184 chr3 198022430 + 99800664 99800763 MER20 218 - 59 168 176183 50 0 6 15 4 8 30 chain 3841 chr3 198022430 + 99815785 99815829 MER2 342 + 135 179 209766 44 chain 66115 chr3 198022430 + 99820470 99821205 L1PA4 6152 - 0 740 50045 6 0 5 729 chain 49720 chr3 198022430 + 99839943 99840593 L1PA7 6471 - 4 614 59215 9 0 2 157 0 1 76 0 1 221 44 0 143 chain 112609 chr3 198022430 + 99856792 99858145 L1PA8A 6298 + 4936 6290 33499 553 0 3 251 3 0 249 9 10 288 chain 29881 chr3 198022430 + 99940450 99940762 AluYb8 318 - 6 318 85161 312 chain 24399 chr3 198022430 + 99950128 99950419 AluSx4 309 + 1 292 108084 291 chain 373910 chr3 198022430 + 99956213 99961804 HERVL-int 5654 + 326 5654 10965 124 623 638 36 2 1 12 323 0 453 0 1 148 0 1 219 0 2 29 0 1 146 14 11 615 0 3 5 9 6 243 0 8 52 0 3 17 0 1 279 0 1 178 0 15 518 0 2 553 0 1 248 0 5 25 17 15 145 0 1 138 8 6 54 0 3 35 0 1 40 0 3 67 0 1 5 0 3 211 chain 59721 chr3 198022430 + 99969263 99970444 THE1D-int 1627 - 15 1627 52984 35 1 0 95 1 0 31 3 1 255 359 792 295 4 7 83 7 6 12 chain 36847 chr3 198022430 + 99981849 99982297 LTR7 482 - 0 482 73738 49 12 14 129 0 1 7 5 36 246 chain 7727 chr3 198022430 + 99991250 99991337 L1PREC2 3366 + 2565 2652 172736 87 chain 77740 chr3 198022430 + 99991337 99992289 LTR5_Hs 974 - 0 974 44637 99 0 1 4 20 17 19 8 15 279 0 1 253 0 1 132 1 16 137 chain 7678 chr3 198022430 + 100004621 100004720 L1MB7 1623 - 447 545 173058 12 1 0 86 chain 7825 chr3 198022430 + 100035223 100035309 L1PA4 6152 + 6065 6151 172157 86 chain 71271 chr3 198022430 + 100046082 100047910 L1PB1 5432 + 4322 5420 47815 149 0 2 18 8 7 18 0 5 78 6 10 17 0 4 9 411 0 172 7 5 170 300 0 20 1 0 97 5 0 14 4 9 12 1 0 9 1 0 10 5 1 9 3 1 52 2 1 16 1 0 43 1 0 16 1 0 6 19 9 16 2 0 5 1 0 14 2 0 11 14 13 21 8 7 6 1 0 16 chain 29825 chr3 198022430 + 100046396 100046745 L1PA5 6144 + 5783 6132 85362 349 chain 3164 chr3 198022430 + 100053300 100053369 MER63B 433 + 362 431 221690 24 17 18 8 1 0 19 chain 77454 chr3 198022430 + 100055169 100056135 LTR5_Hs 974 - 0 974 44755 80 1 3 19 6 4 34 6 13 27 0 1 224 0 1 78 4 0 204 0 1 69 0 2 214 chain 43357 chr3 198022430 + 100069589 100070065 L1PA3long 6157 - 37 513 64752 476 chain 92859 chr3 198022430 + 100070065 100071083 L1PA3long 6157 + 4605 5626 38697 39 0 5 515 1 0 232 1 0 230 chain 8592 chr3 198022430 + 100095422 100095601 L1MB7 1623 - 740 912 167766 22 1 0 34 44 45 64 7 0 7 chain 6593 chr3 198022430 + 100109236 100109381 Tigger3b 1229 + 51 209 180517 53 50 63 42 chain 10435 chr3 198022430 + 100111604 100111737 L1PB3 3668 + 3302 3434 158548 86 4 3 43 chain 7044 chr3 198022430 + 100123229 100123365 MER3 215 + 53 215 177158 52 0 4 8 17 21 10 14 32 35 chain 13414 chr3 198022430 + 100135573 100135769 L1PA8 5853 - 0 192 146659 93 1 0 19 2 1 44 10 9 8 1 0 18 chain 4824 chr3 198022430 + 100140017 100140075 L1MD2 1676 - 1177 1235 197085 58 chain 111518 chr3 198022430 + 100151915 100153360 L1PA8 5853 - 9 1439 33804 84 1 0 19 2 1 43 31 27 60 2 0 46 1 0 143 0 3 324 0 1 15 2 1 44 0 1 22 2 0 531 8 0 65 chain 35721 chr3 198022430 + 100161135 100161603 MER4A1 472 - 0 472 75239 173 25 26 21 5 6 150 0 1 80 0 1 14 chain 183670 chr3 198022430 + 100161614 100164481 MER4-int 2692 - 6 2613 20612 9 5 0 264 1 3 121 1 0 6 0 3 4 0 1 5 3 0 39 0 1 5 2 1 92 0 2 188 8 38 12 0 2 28 30 29 54 5 6 18 1 2 209 1 0 36 34 31 85 3 0 5 9 10 58 0 1 48 0 1 19 1 0 77 9 20 230 0 1 82 0 1 81 1 0 26 1 0 292 300 0 245 0 1 21 0 1 26 1 2 26 2 0 14 1 0 4 0 2 19 chain 167472 chr3 198022430 + 100164530 100166452 L1PA6 6164 + 4240 6162 22342 1288 0 2 624 2 0 8 chain 32068 chr3 198022430 + 100169960 100170443 MER4A1 472 - 0 472 80739 198 47 52 92 27 10 24 0 1 95 chain 107906 chr3 198022430 + 100176940 100178449 THE1D-int 1627 - 0 1615 34752 33 0 3 14 1 0 16 5 9 27 1 0 305 3 60 7 68 0 62 1 0 304 4 10 29 6 7 45 0 1 247 7 109 226 0 3 98 chain 399247 chr3 198022430 + 100191232 100195730 L1PA4 6152 - 11 4513 10129 757 6 5 76 1 5 1118 0 1 240 0 1 728 2 1 1570 chain 162137 chr3 198022430 + 100195773 100197869 SVA_D 2077 - 0 2077 23042 136 0 20 520 9 8 4 0 1 80 0 1 8 10 37 4 0 1 219 1 4 59 6 6 21 52 12 19 2 1 25 0 40 101 0 40 104 116 0 226 0 4 334 0 2 40 chain 3328 chr3 198022430 + 100196850 100196902 SVA_D 2077 - 1291 1343 182502 52 chain 2450 chr3 198022430 + 100197170 100197226 SVA_D 2077 - 1528 1584 174532 56 chain 2852 chr3 198022430 + 100197236 100197267 SVA_D 2077 - 1478 1509 227831 31 chain 21124 chr3 198022430 + 100216268 100216647 L1MB3 1562 - 10 359 123476 28 1 0 22 0 1 57 46 17 69 28 27 128 chain 24331 chr3 198022430 + 100216778 100217153 THE1D 372 + 0 372 108483 56 16 7 103 40 45 56 0 1 104 chain 543331 chr3 198022430 + 100228451 100234482 L1PA3long 6157 + 1 6157 2292 151 0 1 614 9 137 200 4 0 3530 0 1 1085 2 1 436 chain 7744 chr3 198022430 + 100243372 100243467 MER33 330 + 6 101 172631 95 chain 36422 chr3 198022430 + 100260640 100261170 L1P4 1494 - 355 867 74338 79 0 1 29 17 0 34 15 16 50 10 11 40 4 0 252 chain 17944 chr3 198022430 + 100265800 100266546 Tigger2a 444 - 0 444 132994 34 429 140 173 19 6 26 7 38 10 31 0 17 chain 26228 chr3 198022430 + 100268586 100268869 L1PA2 6032 - 175 458 99096 283 chain 17187 chr3 198022430 + 100268869 100269051 L1PA2 6032 + 5849 6031 135070 182 chain 233829 chr3 198022430 + 100290445 100293021 L1PA4 6152 - 1 2580 17096 2138 0 2 143 0 1 295 chain 35255 chr3 198022430 + 100293021 100293414 L1PA4 6152 + 3165 3558 75636 393 chain 97293 chr3 198022430 + 100301314 100303657 MER41-int 2638 - 665 2552 37486 305 1 0 63 0 1 56 0 2 193 0 3 27 5 3 105 1 3 83 33 32 65 18 19 17 5 0 15 20 17 141 575 22 14 115 267 20 85 59 16 0 1 76 0 10 28 25 21 34 4 0 7 1 0 18 2 0 16 5 1 29 35 18 54 13 8 18 chain 19402 chr3 198022430 + 100304717 100305013 THE1B 368 - 0 368 128941 171 35 28 34 12 91 44 chain 9637 chr3 198022430 + 100306185 100306318 LTR8 732 - 10 146 162411 116 6 9 11 chain 29527 chr3 198022430 + 100306762 100307071 AluYk12 309 + 0 309 86538 309 chain 400438 chr3 198022430 + 100313603 100319194 L1PB1 5432 - 12 5350 10082 7 1 0 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 26 17 12 7 6 36 2 1 16 2 1 8 1 0 4 0 1 40 2 0 8 9 5 7 1 0 9 1 0 18 21 17 67 32 0 191 200 8 22 18 18 165 4 0 541 1 0 353 40 17 937 0 1 278 17 14 231 7 8 43 0 1 512 0 1 29 8 11 206 19 20 32 8 0 259 0 7 388 20 35 91 0 10 52 5 4 15 1 2 231 0 3 218 chain 10370 chr3 198022430 + 100320508 100320646 L1MA5 2750 - 128 264 158828 10 1 0 50 1 0 76 chain 50061 chr3 198022430 + 100320707 100321265 LTR6B 557 + 0 557 58975 399 1 0 158 chain 168198 chr3 198022430 + 100336074 100337999 L1PA4 6152 - 9 1940 22263 134 1 2 233 7 12 316 1 0 787 1 0 77 0 1 314 0 1 54 chain 131203 chr3 198022430 + 100337999 100339448 L1PA4 6152 + 2735 4184 27816 1449 chain 209472 chr3 198022430 + 100342391 100345148 L1PA8 5853 - 0 2794 18527 91 11 10 8 1 0 62 1 0 73 2 0 45 1 0 199 0 12 250 6 4 84 7 5 19 0 4 37 8 10 367 1 0 5 4 5 474 0 1 192 1 9 77 6 8 7 2 0 71 0 1 5 2 1 86 9 8 167 0 22 44 6 4 137 6 4 102 0 3 81 chain 31460 chr3 198022430 + 100359947 100360442 LTR24B 570 - 0 473 81719 72 10 11 119 19 0 44 1 0 44 33 23 66 1 0 5 0 1 4 0 7 77 chain 73335 chr3 198022430 + 100384984 100385941 LTR5_Hs 974 - 0 974 46867 103 20 18 19 8 15 163 1 0 66 0 1 121 0 1 163 0 11 4 0 1 121 1 0 167 chain 49282 chr3 198022430 + 100386026 100386648 L1PA7 6471 - 1 627 59525 45 4 5 104 6 8 23 0 1 440 chain 263313 chr3 198022430 + 100389412 100392971 L1PA7 6471 - 9 3244 15517 8 3 0 322 0 1 34 0 9 176 0 1 208 2 1 81 1 0 101 3 0 204 0 1 17 1 0 806 0 1 81 1 0 400 0 1 4 9 5 164 6 0 230 5 4 19 302 0 22 8 12 150 34 14 69 0 1 88 chain 29893 chr3 198022430 + 100392991 100393417 L1MA3 4352 - 1471 1892 85118 154 5 4 85 1 0 6 0 1 10 0 1 108 10 5 47 chain 548335 chr3 198022430 + 100404221 100410354 L1PA4 6152 - 1 6150 1657 147 0 1 1354 4 0 297 0 4 1052 0 1 1191 0 3 615 1 2 371 0 6 537 0 4 564 chain 6032 chr3 198022430 + 100578148 100578227 MADE1 96 - 0 95 184956 51 0 16 28 chain 66494 chr3 198022430 + 100623509 100624264 L1PA4 6152 + 5395 6150 49873 596 1 0 9 3 4 146 chain 160180 chr3 198022430 + 100627346 100629260 L1PA7 6471 + 4554 6465 23314 647 1 0 238 4 0 42 3 0 41 0 1 104 4 0 191 0 1 155 1 0 136 0 10 339 2 0 6 chain 256713 chr3 198022430 + 100652832 100655866 L1PA7 6471 - 5 3047 15898 763 1 0 83 0 6 968 0 1 225 0 1 163 0 1 419 2 0 100 0 1 281 5 6 24 chain 76563 chr3 198022430 + 100658237 100659285 MER11C 1089 - 30 1089 45179 131 1 0 11 1 0 51 0 1 127 0 1 38 1 0 5 0 4 92 69 66 146 1 0 46 1 0 23 0 4 58 21 30 225 chain 18757 chr3 198022430 + 100687537 100687757 L1PA7 6471 - 3 223 130808 220 chain 18976 chr3 198022430 + 100700765 100701136 THE1D 372 - 0 370 130166 128 0 6 17 58 56 14 12 16 57 31 22 54 chain 5378 chr3 198022430 + 100701325 100701393 MADE1 96 - 0 96 191213 30 0 28 38 chain 5827 chr3 198022430 + 100716881 100716955 MER6A 605 - 416 490 186883 74 chain 416830 chr3 198022430 + 100722029 100726942 L1PA6 6164 - 8 4920 9608 840 0 4 125 2 0 46 3 5 93 1 0 741 0 2 213 1 2 135 0 1 679 0 4 76 0 1 188 0 1 665 18 1 120 0 2 175 1 0 165 0 1 421 1 0 58 5 7 141 chain 99160 chr3 198022430 + 100726970 100728303 THE1B-int 1605 - 217 1605 36986 207 11 14 149 3 21 38 2 3 259 6 13 233 0 25 384 9 12 5 3 0 7 0 1 17 chain 81393 chr3 198022430 + 100730841 100731861 MER11A 1151 - 18 1151 43013 48 1 0 181 0 3 39 5 28 28 2 1 245 1 0 192 6 1 73 4 0 140 0 99 55 chain 59933 chr3 198022430 + 100749011 100749800 L1PA8 5853 - 0 793 52857 93 1 0 19 2 1 40 0 1 11 5 4 5 1 0 71 2 0 44 1 0 372 0 3 80 3 10 39 chain 5022 chr3 198022430 + 100750057 100750165 L1MA4 2864 + 2717 2808 194905 7 9 0 14 16 10 19 2 0 41 chain 269240 chr3 198022430 + 100776343 100780056 L1PBa 3878 - 133 3797 15218 8 2 0 20 1 0 308 0 2 180 3 0 178 6 7 330 3 5 155 2 1 241 13 12 25 0 3 144 0 2 122 6 0 169 3 4 174 40 43 5 0 2 334 0 1 154 5 6 25 30 33 63 6 5 67 4 5 191 29 30 141 2 0 28 1 0 288 2 0 21 1 0 50 1 0 5 65 19 40 1 0 9 2 0 5 1 0 4 chain 8404 chr3 198022430 + 100794659 100794778 L1PB4 2604 + 2404 2528 168826 47 9 14 63 chain 59604 chr3 198022430 + 100795532 100796187 L1PA4 6152 - 0 654 53050 18 1 0 636 chain 27773 chr3 198022430 + 100804081 100804435 THE1A 353 + 0 353 93787 109 2 1 92 1 0 38 0 1 112 chain 543883 chr3 198022430 + 100827174 100833319 L1PA4 6152 + 3 6152 2230 481 1 2 758 1 0 149 34 25 1712 0 2 29 0 1 112 0 4 1008 0 2 1016 0 4 844 chain 13723 chr3 198022430 + 100836085 100836264 Tigger1 2417 + 1815 1998 145533 117 3 7 59 chain 14875 chr3 198022430 + 100851665 100851859 MER107 203 + 5 203 141700 45 0 1 117 3 6 29 chain 24681 chr3 198022430 + 100852012 100852361 THE1A 353 + 0 351 106548 23 3 4 52 11 12 20 1 0 59 0 1 31 1 0 98 1 2 49 chain 110200 chr3 198022430 + 100864273 100865477 L1PA4 6152 + 4947 6152 34159 1056 0 1 148 chain 173750 chr3 198022430 + 100892738 100894796 L1PA7 6471 + 4410 6469 21618 420 1 0 54 0 1 565 0 1 170 1 0 687 1 2 139 1 0 7 1 2 11 chain 15640 chr3 198022430 + 100913923 100914247 MSTA 426 - 34 392 139466 75 1 21 33 13 0 9 55 70 25 12 19 26 1 5 5 0 1 69 chain 4533 chr3 198022430 + 100916413 100916598 MER33 330 + 22 235 200425 48 111 139 26 chain 152302 chr3 198022430 + 100917018 100918731 L1PA3long 6157 - 10 1719 24301 110 30 18 658 0 3 44 0 4 251 0 1 620 chain 6157 chr3 198022430 + 100928936 100929117 L1PB1 5432 - 12 171 183922 16 1 0 13 1 0 20 2 1 17 33 28 28 34 20 16 chain 5164 chr3 198022430 + 100929165 100929228 Tigger3c 601 + 477 540 193413 63 chain 17526 chr3 198022430 + 100940547 100940764 L1PA5 6144 - 0 215 134191 13 3 1 201 chain 295276 chr3 198022430 + 100955247 100958922 L1PA7 6471 + 0 6470 13683 180 0 1 77 4 5 140 16 0 555 0 1 318 19 17 408 0 2 102 0 1 125 0 1 691 4 2793 118 0 2 5 2 0 77 1 0 90 0 1 67 1 2 154 0 14 189 0 1 171 1 2 160 chain 22852 chr3 198022430 + 100966967 100967311 THE1B 368 + 0 368 116330 44 1 16 109 1 0 23 47 57 119 chain 381637 chr3 198022430 + 101012944 101018321 L1PA8 5853 - 12 5088 10711 81 1 0 16 1 0 51 1 0 8 16 15 62 2 0 44 1 0 519 0 1 5 0 1 31 0 5 11 0 4 54 0 1 344 0 2 221 0 19 171 4 0 182 0 2 263 9 7 495 8 5 70 13 0 107 328 13 149 11 6 70 26 28 512 0 1 247 2 1 23 0 3 196 1 0 305 41 39 4 0 1 101 1 2 124 7 8 19 2 1 52 0 1 29 28 36 308 chain 109847 chr3 198022430 + 101026573 101028138 THE1C-int 1605 - 0 1605 34247 9 0 1 92 0 1 154 17 51 286 0 1 256 1 10 50 3 12 166 0 1 59 85 11 115 8 10 24 0 1 131 3 0 11 4 61 75 0 1 16 chain 20695 chr3 198022430 + 101046070 101046445 THE1C 375 + 0 375 124986 18 0 1 4 1 0 41 22 23 26 2 1 24 3 7 34 0 2 5 50 45 118 1 0 26 chain 21000 chr3 198022430 + 101058318 101058577 AluSx1 309 + 36 297 123921 65 0 3 161 1 0 32 chain 2889 chr3 198022430 + 101061481 101061513 L1MC4a 1092 - 243 275 227218 32 chain 46193 chr3 198022430 + 101063869 101064479 L1PB1 5432 - 1263 1938 61854 15 0 1 80 0 5 298 44 20 29 2 0 107 0 85 35 chain 87334 chr3 198022430 + 101064485 101065709 L1PB1 5432 + 4187 5392 40634 17 0 2 41 0 1 302 1 0 61 2 0 17 0 1 74 0 2 39 0 6 146 1 3 115 0 2 87 4 3 8 1 0 24 1 0 8 1 0 12 5 1 8 2 0 49 22 20 45 1 0 12 18 5 29 2 0 4 1 0 15 2 0 24 1 0 22 chain 13073 chr3 198022430 + 101068392 101068533 L1PA4 6152 + 6005 6146 147940 141 chain 14107 chr3 198022430 + 101078116 101078361 L1PREC2 3366 - 954 1160 144188 80 62 23 103 chain 32044 chr3 198022430 + 101087192 101087577 L1PA5 6144 + 5756 6135 80791 215 1 2 11 7 0 151 chain 22731 chr3 198022430 + 101095378 101095628 L1PA4 6152 + 5891 6141 116917 250 chain 54630 chr3 198022430 + 101124812 101125435 L1PA5 6144 + 5518 6143 55952 245 0 1 336 0 1 42 chain 188026 chr3 198022430 + 101125438 101127913 L1PBa 3878 + 1046 3802 20235 254 0 1 192 0 4 98 0 275 105 0 9 368 1 0 68 1 2 164 0 4 116 0 2 326 13 10 12 0 1 162 1 0 236 6 7 233 0 1 21 1 0 21 2 0 10 3 2 8 5 0 15 1 0 4 6 4 12 1 0 9 chain 22928 chr3 198022430 + 101140816 101141173 MER1B 344 + 0 344 115974 18 20 23 210 42 26 67 chain 16510 chr3 198022430 + 101145012 101145825 L1PA13 3608 + 321 837 136889 36 581 284 196 chain 315410 chr3 198022430 + 101146551 101150393 L1PA7 6471 - 10 3858 12789 261 3 2 4 0 1 482 2 1 236 0 5 190 5 7 319 2 0 275 9 13 407 1 4 725 1 0 77 0 5 102 4 7 173 12 13 511 13 0 28 chain 238079 chr3 198022430 + 101151749 101155395 L1MA1 4479 + 535 4136 16878 33 0 3 124 0 2 12 1 0 20 1 0 54 11 12 20 0 5 118 0 6 35 25 9 48 2 1 87 0 6 176 2 3 201 28 12 79 0 2 121 0 3 108 2 1 109 2 0 8 0 1 80 0 1 6 0 2 5 14 19 15 3 4 48 1 0 26 33 34 408 1 0 68 1 0 91 12 10 31 13 12 48 0 5 29 0 1 31 22 0 15 16 15 24 2 0 121 53 53 19 4 0 68 24 20 20 3 0 14 0 4 55 41 41 121 2 0 195 5 4 22 2 0 16 1 0 8 12 13 70 2 0 13 1 0 88 1 0 5 3 0 126 1 0 29 2 0 29 chain 129841 chr3 198022430 + 101157740 101159435 SVA_F 1814 + 335 1814 28128 51 1 2 313 0 40 114 273 0 25 0 1 11 1 0 56 3 18 161 0 1 686 chain 2405 chr3 198022430 + 101158225 101158255 SVA_F 1814 + 911 941 134524 30 chain 15815 chr3 198022430 + 101158255 101158487 SVA_F 1814 + 893 1091 81329 43 0 1 10 54 19 125 chain 4249 chr3 198022430 + 101158309 101158362 SVA_F 1814 + 1011 1142 134524 13 5 83 35 chain 82018 chr3 198022430 + 101161818 101162747 L1PA3long 6157 - 1024 1959 42638 784 12 18 133 chain 90393 chr3 198022430 + 101162747 101163746 L1PA3long 6157 + 5158 6157 39510 999 chain 13885 chr3 198022430 + 101167313 101167486 L1PA4 6152 - 5268 5442 144121 110 0 1 63 chain 463294 chr3 198022430 + 101167486 101172710 L1PA4 6152 + 902 6141 8285 513 0 5 255 0 2 396 0 3 105 0 4 134 0 1 195 1 0 668 2 0 495 0 2 252 5 7 366 1 0 1836 chain 23988 chr3 198022430 + 101181112 101181397 AluSp 311 + 9 294 110391 285 chain 466003 chr3 198022430 + 101185558 101191500 L1PA6 6164 + 0 6160 8190 234 6 8 77 1 0 199 0 2 47 1 0 464 0 2 1108 0 1 71 0 2 6 9 0 143 0 1 25 0 2 80 40 0 107 13 0 8 0 13 179 323 0 401 8 582 142 0 2 40 5 7 1129 6 0 8 0 6 196 0 4 30 3 0 506 1 2 326 chain 51965 chr3 198022430 + 101192937 101193693 L1PA13 3608 - 139 896 57641 21 9 5 41 8 6 5 1 0 57 1 0 62 2 0 33 0 10 69 2 1 31 1 0 6 25 27 190 4 5 188 chain 90441 chr3 198022430 + 101194944 101196032 L1PA7 6471 - 3 1088 39490 7 4 0 138 2 3 6 2 0 5 0 2 170 0 1 176 2 0 260 0 2 77 1 0 238 chain 3247 chr3 198022430 + 101200747 101200860 L1MC 810 + 172 287 220054 8 2 0 3 1 0 23 28 28 19 10 9 13 0 6 6 chain 33430 chr3 198022430 + 101201721 101202283 L1PA16 3655 + 3024 3563 78515 63 12 8 53 0 6 50 6 5 79 14 12 116 8 7 22 1 0 4 2 18 54 38 2 40 chain 47338 chr3 198022430 + 101213445 101214177 L1PA11 4918 + 3826 4578 60943 146 0 1 234 0 13 60 1 2 31 0 4 49 33 53 56 2 0 13 1 0 20 4 0 9 47 37 13 2 0 11 chain 31379 chr3 198022430 + 101246382 101246845 MLT2A1 477 + 0 477 81856 142 0 1 26 0 4 30 2 1 70 1 2 106 44 54 22 1 0 19 chain 29557 chr3 198022430 + 101251461 101251940 MER84 505 - 8 505 86385 153 12 7 130 39 39 27 10 16 43 6 10 23 0 13 36 chain 367200 chr3 198022430 + 101255854 101260167 L1P1 4361 - 20 4357 11178 12 2 1 23 1 0 157 1 0 850 0 1 926 0 2 111 0 10 234 14 11 853 1 0 314 0 17 52 10 11 752 chain 34616 chr3 198022430 + 101260967 101261554 MER4B 649 - 57 649 76732 30 4 3 23 10 11 105 15 1 13 14 9 178 1 3 27 3 1 21 4 35 12 18 8 65 0 1 5 9 11 30 chain 5983 chr3 198022430 + 101264279 101264365 LTR23 429 - 342 429 185404 27 4 5 55 chain 5119 chr3 198022430 + 101268173 101268264 LTR26B 539 - 240 345 193882 51 15 21 17 0 8 8 chain 13338 chr3 198022430 + 101269199 101269438 MER50B 698 + 167 428 146942 37 7 33 109 39 0 12 3 38 32 chain 132117 chr3 198022430 + 101269756 101271340 SVA_A 1864 + 26 1864 27615 626 1 111 124 9 80 90 4 1 86 2 1 38 2 79 602 chain 9614 chr3 198022430 + 101271642 101271753 THE1B 368 + 243 354 162515 111 chain 119478 chr3 198022430 + 101271784 101273340 THE1B-int 1605 + 17 1598 31228 411 1 26 207 1 2 19 7 6 262 0 6 6 5 0 7 0 2 61 4 1 80 1 0 10 12 13 192 0 1 6 1 0 263 chain 2837 chr3 198022430 + 101275105 101275170 MER34C_ 573 + 237 301 228137 21 23 22 21 chain 6924 chr3 198022430 + 101276575 101276654 MER83 447 - 368 447 178004 79 chain 69693 chr3 198022430 + 101323460 101324304 L1PA6 6164 - 2 857 48527 153 0 1 150 0 1 4 1 0 151 0 7 100 0 2 16 6 5 183 0 1 34 0 1 46 chain 36244 chr3 198022430 + 101324304 101324784 L1P2 5180 - 4701 5178 74273 216 17 16 53 2 1 43 1 0 148 chain 7796 chr3 198022430 + 101329129 101329253 Tigger3b 1229 + 528 646 172326 18 2 0 21 12 8 71 chain 36556 chr3 198022430 + 101331769 101332257 LTR2B 499 - 0 499 74163 180 1 0 10 0 1 44 0 5 7 5 0 123 0 19 39 9 0 56 0 1 14 chain 15599 chr3 198022430 + 101341387 101341701 L1PA15 4387 - 98 391 139587 19 17 14 39 1 0 10 38 34 45 12 0 26 1 0 78 9 9 19 chain 57440 chr3 198022430 + 101348883 101349615 MER4E1 777 + 0 770 54271 26 0 2 49 0 2 102 0 3 145 0 19 84 0 1 11 1 2 63 0 2 28 3 11 220 chain 7839 chr3 198022430 + 101366264 101366362 HY3 101 + 0 98 172079 98 chain 7246 chr3 198022430 + 101380908 101380993 HY1 111 - 3 92 175791 63 0 4 22 chain 10601 chr3 198022430 + 101391424 101391569 AluSx 319 + 147 291 157820 47 9 8 89 chain 26020 chr3 198022430 + 101398125 101398416 AluYf4 310 - 18 310 99946 37 1 2 253 chain 73404 chr3 198022430 + 101410736 101411705 LTR5_Hs 974 + 0 974 46834 167 1 0 118 0 1 181 0 1 79 8 4 19 2 1 5 0 1 19 2 0 60 1 0 161 10 17 31 8 6 20 0 6 77 chain 422494 chr3 198022430 + 101411705 101418089 HERVK-int 6823 + 0 6567 9474 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 15 12 11 12 0 311 1 0 205 2 0 26 1 0 21 1 0 251 95 94 17 0 1 4 1 0 250 118 121 11 1 0 361 44 38 175 80 77 397 1 2 10 32 89 272 1 0 4 0 1 7 2 1 73 21 20 114 0 2 117 0 11 90 0 1 148 0 3 57 4 5 157 26 7 151 1 0 22 9 13 1612 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 4 6 6 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 9 1 0 22 1 0 4 1 0 12 35 26 17 1 0 4 chain 76137 chr3 198022430 + 101418890 101419859 LTR5_Hs 974 + 0 974 45398 167 1 0 122 0 1 177 0 1 102 2 1 5 0 1 79 1 0 161 10 17 31 8 6 103 chain 75937 chr3 198022430 + 101422676 101423645 LTR5_Hs 974 - 0 974 45523 103 8 6 31 11 18 64 8 0 7 0 8 81 6 5 183 0 1 177 0 1 122 1 0 167 chain 24496 chr3 198022430 + 101433114 101433421 AluSp 311 + 10 311 107564 219 0 1 27 7 0 54 chain 6737 chr3 198022430 + 101437334 101437418 LTR24 460 - 371 455 179419 84 chain 5602 chr3 198022430 + 101438866 101438936 MER53 195 + 108 179 189060 33 0 1 37 chain 28423 chr3 198022430 + 101452363 101452673 AluYa5 310 - 0 310 91495 310 chain 513454 chr3 198022430 + 101454243 101461588 L1PA7 6471 + 0 6470 5841 301 1 0 66 6 7 36 0 2 195 0 1 198 1 0 17 1 0 86 1 0 252 1 6 316 0 6 111 0 1 219 1 0 231 16 20 22 1 0 388 4 5 99 4 9 38 14 0 57 6 7 193 6 10 187 10 14 53 1 5 79 0 3 183 0 1 125 0 4 17 0 4 95 0 5 24 0 1 256 0 1 44 1 0 3 1 0 38 6 7 4 1 0 203 303 0 403 7 16 250 307 0 265 0 7 425 0 7 172 329 0 70 0 4 245 3 0 107 1 0 81 1 4 4 0 1 140 1 2 12 chain 44144 chr3 198022430 + 101464606 101465096 L1PA3long 6157 - 5 495 64024 490 chain 88165 chr3 198022430 + 101465096 101466055 L1PA3long 6157 + 4720 5679 40313 959 chain 455549 chr3 198022430 + 101467840 101472888 L1PA3long 6157 - 0 6147 8558 1054 0 1 394 0 1084 1257 0 1 277 0 20 210 0 1 27 3 0 349 0 1 766 8 1 228 0 1 475 chain 18526 chr3 198022430 + 101496915 101497123 L1PA5 6144 + 5936 6144 131434 208 chain 4354 chr3 198022430 + 101506580 101506634 L1MB3 1562 + 1240 1294 202526 54 chain 79295 chr3 198022430 + 101511025 101512218 L1PA14 3548 - 63 1226 43912 21 15 8 41 1 0 17 1 0 5 1 0 15 4 2 34 15 10 113 1 0 83 1 0 5 2 0 10 12 7 109 2 0 5 2 0 47 2 0 10 6 5 24 8 7 218 1 0 153 6 5 102 1 2 18 0 5 82 chain 3452 chr3 198022430 + 101514937 101514979 MLT1L 557 - 348 390 216174 42 chain 72866 chr3 198022430 + 101516268 101517053 L1PA2 6032 - 1 786 47087 785 chain 24915 chr3 198022430 + 101535129 101535463 L1PA8 5853 - 0 345 105244 6 1 0 57 1 9 21 1 0 18 2 12 37 1 0 13 1 0 72 2 0 43 2 1 56 chain 19279 chr3 198022430 + 101561287 101561552 MER30 238 + 0 238 129289 107 27 0 131 chain 93741 chr3 198022430 + 101604303 101605396 L1PA6 6164 - 2 1098 38425 8 2 0 453 0 1 378 0 4 252 chain 11039 chr3 198022430 + 101614861 101615091 L1PB1 5432 - 5 211 156054 5 2 0 18 1 0 13 1 0 21 1 0 26 22 17 30 13 1 15 1 0 43 2 1 16 chain 19465 chr3 198022430 + 101616126 101616486 THE1D 372 - 1 372 128769 126 66 76 8 0 1 52 10 9 33 11 12 54 chain 3722 chr3 198022430 + 101620497 101620539 MIRb 242 - 112 154 211600 42 chain 45323 chr3 198022430 + 101623397 101623983 L1PA7 6471 - 1 588 62691 155 1 0 88 0 7 7 0 7 235 20 8 80 chain 419079 chr3 198022430 + 101624286 101629472 L1PA7 6471 - 2 5192 9557 10 2 0 151 1 0 296 0 2 172 0 1 69 0 1 138 0 4 66 3 0 115 0 2 5 2 0 300 1 19 5 0 3 852 0 1 254 1 0 3 1 0 170 0 1 24 31 0 70 1 0 28 1 3 201 1 0 397 2 6 29 1 2 474 9 10 368 4 1 242 2 4 115 0 7 293 1 0 118 0 1 10 0 1 141 1 0 5 chain 532938 chr3 198022430 + 101637912 101644342 L1PA7 6471 - 1 6471 3858 19 1 2 23 7 8 219 4 0 203 15 0 115 0 1 174 5 4 81 1 0 68 0 28 97 0 1 334 0 1 73 0 1 1016 8 1 229 3 16 208 0 5 40 1 0 871 3 1 460 0 5 264 0 1 153 0 1 185 0 1 251 0 1 156 0 4 642 0 1 101 0 5 400 chain 29794 chr3 198022430 + 101653640 101653950 AluYa5 310 - 0 310 85470 310 chain 43933 chr3 198022430 + 101666354 101666836 L1PA2 6032 - 0 489 64289 141 0 7 341 chain 24493 chr3 198022430 + 101667811 101668170 THE1B 368 + 0 368 107580 169 1 0 23 41 51 125 chain 361307 chr3 198022430 + 101685805 101690391 L1PA6 6164 - 4 6154 11334 231 6 8 177 0 1564 484 0 1 4 8 5 155 0 1 217 0 1 122 0 1 4 1 2 604 0 1 244 14 0 154 1 0 139 1 0 4 0 1 13 6 7 153 1 6 405 1 0 222 21 22 78 2 3 60 0 1 262 0 17 218 3 4 112 23 7 274 37 37 125 chain 9288 chr3 198022430 + 101705344 101705446 L1PA2 6032 + 5930 6032 164117 102 chain 539207 chr3 198022430 + 101727048 101733199 L1PA4 6152 + 2 6151 2948 578 1 0 582 0 3 70 0 1 8 0 1 45 0 1 1472 0 1 118 10 0 320 0 12 564 0 1 313 0 1 1195 13 1 862 chain 533766 chr3 198022430 + 101758774 101764897 L1PA5 6144 + 0 6142 3734 3861 1 2 481 0 4 87 0 6 56 0 1 432 0 1 215 0 5 852 0 1 138 chain 31648 chr3 198022430 + 101768823 101769340 L1PA14 3548 - 106 606 81408 27 1 0 19 1 0 9 1 0 9 4 2 35 13 9 113 2 1 81 1 0 5 3 1 13 5 1 40 8 12 60 2 0 5 2 0 58 chain 20416 chr3 198022430 + 101769362 101769725 THE1B 368 + 0 368 125849 13 2 0 31 4 5 62 4 5 58 71 76 118 chain 125184 chr3 198022430 + 101769742 101771295 THE1B-int 1605 + 17 1600 29326 415 0 25 573 0 5 565 chain 24501 chr3 198022430 + 101771300 101771645 THE1B 368 + 0 368 107539 44 0 15 108 4 3 16 6 8 26 1 0 83 2 0 6 0 10 49 chain 47456 chr3 198022430 + 101771645 101772289 L1PREC2 3366 + 2094 2706 60863 307 0 1 10 1 2 68 33 0 67 2 1 156 chain 4731 chr3 198022430 + 101776046 101776100 L1MB2 1706 - 472 526 198154 54 chain 80954 chr3 198022430 + 101790794 101791693 L1PA3long 6157 + 5258 6156 43212 138 1 0 760 chain 3994 chr3 198022430 + 101799901 101799953 MLT1B 390 + 64 117 207472 26 0 1 26 chain 66310 chr3 198022430 + 101819850 101820664 L1PA8 5853 + 5045 5853 49943 198 0 4 184 4 0 133 1 0 45 2 0 73 1 0 58 2 1 19 1 0 93 chain 23349 chr3 198022430 + 101830061 101830343 AluSg7 307 - 24 307 113926 151 0 1 131 chain 205151 chr3 198022430 + 101846165 101848432 L1PA3long 6157 + 3887 6157 18845 50 0 1 1226 0 3 229 1 0 761 chain 104634 chr3 198022430 + 101866088 101867592 L1PREC2 3366 - 499 1979 35583 13 3 0 4 1 0 43 2 1 52 6 4 9 4 3 96 17 0 28 16 17 337 5 26 166 0 4 299 18 4 82 2 1 80 0 1 74 8 7 78 19 4 13 1 6 28 chain 44958 chr3 198022430 + 101869223 101869971 L1MA3 4352 + 28 1601 63110 9 1 0 57 3 4 8 1 0 47 1 0 18 0 1 4 20 14 13 0 1 114 4 38 11 18 19 29 7 6 197 8 9 37 1 798 67 7 6 66 chain 6763 chr3 198022430 + 101901789 101901910 L1PA8 5853 + 5646 5848 179220 31 13 11 21 9 92 47 chain 82780 chr3 198022430 + 101927241 101928295 MER11C 1089 - 16 1089 42426 8 0 1 144 1 0 54 0 1 5 0 1 121 0 1 38 1 0 5 0 4 20 0 1 283 1 0 65 0 4 61 0 9 247 chain 3236 chr3 198022430 + 101928815 101928853 MIR 256 + 197 235 220307 38 chain 207138 chr3 198022430 + 101934297 101936572 L1PA2 6032 + 3746 6027 18707 1359 0 1 774 1 0 129 0 6 12 chain 273675 chr3 198022430 + 101938257 101941769 L1PA8 5853 - 0 5803 14989 91 3 2 19 4 3 45 1 0 13 8 7 64 3 1 21 3 0 25 1 0 478 0 2 68 6 4 343 0 1 4 1 0 81 0 1 239 2 1 283 0 4 9 0 2330 137 1 0 173 1 2 248 1 0 4 0 1 115 0 1 724 0 4 69 0 1 123 53 17 13 1 0 11 2 0 21 chain 28758 chr3 198022430 + 101972200 101972501 AluYb9 318 - 17 318 90081 301 chain 46904 chr3 198022430 + 101989481 101990002 L1PA4 6152 + 5631 6152 61305 521 chain 28060 chr3 198022430 + 101992170 101992626 L1PA14 3548 - 63 487 92789 20 1 0 10 6 0 41 1 0 18 1 0 9 13 10 31 3 0 14 7 0 104 11 10 81 1 0 6 2 0 17 6 0 53 chain 29145 chr3 198022430 + 101996979 101997284 AluYb8 318 + 11 316 88344 305 chain 11799 chr3 198022430 + 102003466 102003750 L1PB1 5432 - 10 262 153049 18 1 0 13 1 0 21 1 0 23 79 53 12 1 0 45 19 17 50 chain 47554 chr3 198022430 + 102011880 102012430 L1PA5 6144 + 5443 6000 60807 295 0 6 102 0 1 67 0 2 78 2 0 6 chain 12059 chr3 198022430 + 102012430 102012572 L1PA5 6144 + 6002 6144 151948 142 chain 91805 chr3 198022430 + 102012780 102013850 MER11C 1089 + 0 1073 39026 527 0 1 63 0 1 84 1 0 209 1 2 26 0 1 159 chain 12793 chr3 198022430 + 102046210 102046360 L1PA5 6144 - 8 159 149084 139 0 1 11 chain 12423 chr3 198022430 + 102210849 102211118 LTR12C 1709 - 872 1059 150554 42 41 0 22 15 0 7 43 17 99 chain 2498 chr3 198022430 + 102210891 102210920 LTR12C 1709 - 992 1021 216273 29 chain 84642 chr3 198022430 + 102214280 102215199 L1PA2 6032 + 5110 6029 41664 919 chain 4731 chr3 198022430 + 102272380 102272444 MSTD 398 - 83 148 198152 32 1 2 31 chain 30558 chr3 198022430 + 102283794 102284112 AluYb8 318 - 0 318 83312 318 chain 108457 chr3 198022430 + 102285571 102286921 L1PA7 6471 + 5122 6470 34574 246 5 6 209 0 2 258 1 2 381 0 2 27 1 3 109 8 0 94 2 0 9 chain 16270 chr3 198022430 + 102293860 102294102 L1PA8 5853 + 5608 5853 137548 69 7 6 10 5 3 44 2 1 19 0 7 86 chain 24715 chr3 198022430 + 102314147 102314506 THE1B 368 - 0 368 106357 118 18 26 10 14 16 29 1 0 169 chain 4950 chr3 198022430 + 102329565 102329627 MER92B 628 + 0 61 195710 55 1 0 6 chain 215291 chr3 198022430 + 102341018 102343407 L1PA3long 6157 + 3771 6157 18144 13 0 1 307 0 1 216 4 0 1390 1 0 458 chain 28807 chr3 198022430 + 102351744 102352109 MLT2A1 477 - 108 471 89862 109 0 1 89 4 1 163 chain 61459 chr3 198022430 + 102366120 102366804 L1PA4 6152 - 1 683 52131 5 2 0 677 chain 21294 chr3 198022430 + 102370177 102370444 L1PA6 6164 - 6 284 122883 129 0 14 5 2 0 6 2 1 123 chain 26773 chr3 198022430 + 102442346 102442689 THE1A 353 + 0 341 97072 109 2 1 88 1 0 143 chain 119961 chr3 198022430 + 102442698 102444244 THE1A-int 1579 + 0 1573 31072 62 0 18 89 2 1 5 0 1 450 0 1 561 1 7 279 0 1 28 0 1 7 1 0 36 4 6 9 1 0 11 chain 29108 chr3 198022430 + 102444250 102444605 THE1A 353 + 0 353 88512 108 1 0 90 1 0 155 chain 62391 chr3 198022430 + 102451280 102452058 LTR17 781 - 1 781 51726 41 21 0 12 1 23 376 0 1 19 10 0 47 0 1 130 0 9 121 chain 30630 chr3 198022430 + 102487999 102488449 L1PA11 4918 - 388 834 83156 13 3 0 7 4 0 21 1 0 17 2 0 58 0 1 19 7 6 51 4 6 114 0 3 53 1 2 75 chain 139822 chr3 198022430 + 102494574 102496208 L1PA5 6144 - 5 1666 26168 142 3 4 95 0 3 116 7 31 371 1 0 82 0 1 18 1 0 798 chain 51159 chr3 198022430 + 102496208 102496789 L1PA5 6144 + 3881 4473 58212 456 0 4 36 0 7 89 chain 16512 chr3 198022430 + 102500080 102500286 L1PA15 4387 - 533 745 136885 30 3 9 173 chain 4124 chr3 198022430 + 102517941 102517992 MLT1B 390 - 34 86 205595 37 0 1 14 chain 12925 chr3 198022430 + 102518076 102518348 MSTA 426 - 39 355 148528 70 3 24 50 39 38 40 4 0 9 28 56 29 chain 267233 chr3 198022430 + 102541957 102545030 L1PA4 6152 + 3063 6152 15330 877 0 1 587 0 4 1397 0 1 68 1 0 4 5 8 28 0 1 88 0 7 18 chain 4059 chr3 198022430 + 102554132 102554178 MADE1 96 - 50 96 206498 46 chain 481044 chr3 198022430 + 102555108 102561266 L1PA6 6164 - 12 6164 7691 398 9 7 431 0 1 4 0 3 12 0 4 131 3 4 585 9 0 225 0 1 238 1 2 307 35 12 597 5 6 232 1 2 202 0 1 294 0 4 115 0 1 207 1 2 293 0 2 103 1 0 86 1 0 78 6 7 124 0 1 406 0 1 116 9 20 68 0 17 233 1 0 21 15 18 80 19 0 288 17 11 151 chain 24000 chr3 198022430 + 102572930 102573277 THE1A 353 - 0 353 110330 90 1 0 4 10 4 145 6 5 18 13 27 60 chain 119487 chr3 198022430 + 102573282 102574838 THE1A-int 1579 - 5 1548 31224 14 1 0 404 5 6 708 0 5 261 0 1 5 2 1 53 23 5 80 chain 27686 chr3 198022430 + 102574852 102575197 THE1A 353 - 2 349 94094 56 0 3 181 1 0 107 chain 23996 chr3 198022430 + 102577864 102578226 THE1B 368 - 0 368 110354 49 5 13 114 10 8 20 10 9 44 10 11 100 chain 4515 chr3 198022430 + 102590488 102590648 L1MA8 2339 + 2033 2139 200612 46 94 40 20 chain 17633 chr3 198022430 + 102594173 102594389 L1PA6 6164 + 5950 6162 133900 206 4 0 6 chain 34530 chr3 198022430 + 102595325 102595732 L1P1 4361 - 44 449 76862 12 1 0 155 1 0 238 chain 11848 chr3 198022430 + 102622730 102622910 LTR9B 643 - 6 188 152836 33 25 24 71 0 3 51 chain 33958 chr3 198022430 + 102622911 102623483 LTR10F 562 - 0 562 77680 282 8 14 10 7 0 25 0 3 5 36 14 14 11 42 14 35 7 46 0 5 41 0 2 38 chain 263144 chr3 198022430 + 102638475 102641775 L1PA7 6471 - 4 4821 15533 153 0 1 113 8 12 98 0 1 468 1 3 24 1 2 47 1 2 93 5 0 675 0 3 100 0 4 932 0 1 111 0 1 4 1 0 56 10 14 63 3 2 7 0 4 241 3 1500 82 chain 3492 chr3 198022430 + 102672348 102672391 MER89 557 + 0 45 215490 8 0 2 35 chain 330689 chr3 198022430 + 102686562 102690246 L1PA3long 6157 - 0 3686 12175 671 1 2 41 0 1 414 0 1 284 0 1 4 1 0 1545 5 4 718 chain 47593 chr3 198022430 + 102690246 102690771 L1PA3long 6157 + 1972 2497 60771 525 chain 10901 chr3 198022430 + 102706478 102706639 MER1B 344 - 5 241 156584 69 0 8 34 14 81 44 chain 5455 chr3 198022430 + 102711783 102711847 THE1-int 844 - 70 134 190480 64 chain 9628 chr3 198022430 + 102711906 102712020 THE1C 375 - 261 375 162455 114 chain 58451 chr3 198022430 + 102714938 102715905 L1MA1 4479 + 3231 4172 53716 20 1 0 14 9 6 49 1 4 26 0 1 31 3 0 5 2 0 6 0 1 126 1 0 124 27 29 5 2 0 37 1 0 24 2 0 16 2 1 14 0 1 55 1 0 20 2 0 14 1 0 72 0 1 5 22 14 123 12 11 19 2 0 37 1 0 9 1 0 6 4 2 13 chain 16262 chr3 198022430 + 102718710 102718904 L1PA4 6152 - 9 203 137575 194 chain 26722 chr3 198022430 + 102732939 102733257 AluYk4 311 + 0 308 97250 118 10 0 190 chain 4768 chr3 198022430 + 102733659 102733865 L1MB1 2102 + 1814 2043 197717 36 104 132 25 16 12 19 1 0 5 chain 9612 chr3 198022430 + 102737134 102737249 L1PA4 6152 + 6028 6143 162527 115 chain 75399 chr3 198022430 + 102747093 102747907 L1PA2 6032 + 5216 6030 45822 814 chain 17860 chr3 198022430 + 102769213 102769437 AluSp 311 + 73 298 133214 64 1 2 159 chain 69933 chr3 198022430 + 102776774 102777745 L1PA8 5853 - 0 966 48418 77 17 16 16 1 0 44 16 13 8 1 0 68 3 1 46 6 5 472 1 0 36 6 1 36 0 8 7 10 12 100 chain 49561 chr3 198022430 + 102787928 102788494 L1PA5 6144 - 5 582 59350 333 0 1 52 0 10 181 chain 15082 chr3 198022430 + 102788494 102788668 L1PA5 6144 + 5375 5549 141078 174 chain 6223 chr3 198022430 + 102805648 102805719 L1PA5 6144 - 0 71 183381 71 chain 4699 chr3 198022430 + 102805732 102805783 L1PA5 6144 + 6008 6059 198545 51 chain 11148 chr3 198022430 + 102808403 102808989 L1MA4A 3247 - 73 581 155646 23 29 22 22 1 0 73 53 54 12 3 0 22 216 159 8 4 0 26 49 45 15 10 7 20 chain 28977 chr3 198022430 + 102810352 102810663 AluYa5 310 - 0 310 89103 178 1 0 132 chain 7871 chr3 198022430 + 102827475 102827565 L1M1 2793 + 1386 1476 171861 90 chain 25155 chr3 198022430 + 102840111 102840391 L1PA4 6152 + 5870 6151 103985 276 0 1 4 chain 175845 chr3 198022430 + 102850061 102852043 L1HS 6032 - 2349 4333 21366 53 0 1 235 1 2 5 1 0 428 0 1 1259 chain 29935 chr3 198022430 + 102852043 102852374 L1PA3long 6157 - 524 855 85007 331 chain 45650 chr3 198022430 + 102852374 102852876 L1PA3long 6157 + 5639 6142 62354 184 0 1 318 chain 21016 chr3 198022430 + 102860978 102861232 L1PA6 6164 + 5913 6162 123859 239 5 0 10 chain 24044 chr3 198022430 + 102885919 102886224 AluY 311 + 5 311 110086 126 1 2 178 chain 2966 chr3 198022430 + 102924460 102924495 MADE1 96 - 58 93 225751 35 chain 20199 chr3 198022430 + 102925349 102925570 L1PA3long 6157 - 8 229 126532 221 chain 380078 chr3 198022430 + 102929599 102934310 HERVK9-int 4720 + 36 4720 10751 13 8 5 4 1 0 46 0 6 13 2 1 8 1 0 4 0 1 23 1 0 369 1 0 649 44 27 208 5 1 1008 1 2 94 0 13 272 5 1 1198 16 0 310 16 17 391 chain 39951 chr3 198022430 + 102934310 102934809 MER9a3 513 + 0 503 69395 18 0 2 90 0 1 118 9 10 19 1 0 176 0 1 68 chain 554276 chr3 198022430 + 102939292 102945320 L1PA2 6032 + 3 6032 911 700 0 1 2254 0 1 2924 1 0 149 chain 373600 chr3 198022430 + 102951621 102956029 L1PA2 6032 + 1785 5873 10972 1170 315 0 2911 5 0 7 chain 13769 chr3 198022430 + 102956029 102956183 L1PA2 6032 + 5878 6032 145366 154 chain 140466 chr3 198022430 + 102973166 102974799 SVA_D 2077 - 0 2077 26076 7 2 0 309 1 0 318 1 2 34 1 405 14 0 2 25 0 1 10 12 54 873 3 0 23 chain 20886 chr3 198022430 + 102993465 102993745 L1PA4 6152 - 9 289 124333 133 0 15 9 22 7 116 chain 203949 chr3 198022430 + 102994446 102997248 L1PA8 5853 - 0 2810 18929 93 1 0 4 19 18 25 4 0 6 4 8 11 1 0 9 10 9 62 2 0 12 7 6 26 1 0 218 6 7 162 8 7 151 0 1 9 2 5 427 5 6 54 3 0 173 11 8 15 0 1 159 0 12 287 0 1 542 12 12 109 0 1 13 0 2 139 chain 304402 chr3 198022430 + 102997364 103002912 HERVL-int 5654 - 1615 5643 13223 152 0 1 219 0 1 163 1 2 256 1 0 113 1 9 845 1642 21 26 0 11 132 0 1 355 10 12 78 0 1 127 3 9 387 6 0 16 0 74 118 0 2 136 0 1 315 1 0 445 chain 72253 chr3 198022430 + 102999197 103000000 L1PA3long 6157 - 0 804 47356 778 0 1 25 chain 21757 chr3 198022430 + 103000507 103000750 L1P2 5180 + 1709 1953 121179 104 0 1 139 chain 354302 chr3 198022430 + 103018107 103022847 L1PA8A 6298 - 7 4779 11495 9 0 9 50 1 16 11 24 24 458 3 2 4 0 1 7 0 1 113 6 7 95 1 0 16 10 11 162 0 1 459 1 2 232 0 2 188 12 16 323 0 1 139 0 3 39 4 0 11 0 1 12 3 0 15 0 1 44 2 1 41 0 1 58 6 0 200 1 0 29 0 1 15 9 0 7 4 13 23 34 4 14 0 27 92 0 1 254 4 5 51 19 23 375 0 1 66 2 0 313 2 1 39 0 1 33 11 14 473 0 1 21 28 27 62 chain 17774 chr3 198022430 + 103030382 103030586 L1PA7 6471 - 1 205 133495 204 chain 8029 chr3 198022430 + 103030586 103030682 L1PA7 6471 + 6171 6267 170884 96 chain 2943 chr3 198022430 + 103064191 103064223 THE1-int 844 - 201 233 226271 32 chain 4347 chr3 198022430 + 103064290 103064340 MLT2A2 560 + 508 558 202633 50 chain 2760 chr3 198022430 + 103115170 103115227 L1MA4 2864 + 2746 2801 229323 21 14 12 22 chain 41356 chr3 198022430 + 103136212 103136684 L1PA5 6144 - 1293 1765 67134 472 chain 111139 chr3 198022430 + 103136684 103137966 L1PA5 6144 + 4851 6139 33899 286 5 10 419 0 1 572 chain 15415 chr3 198022430 + 103138473 103138646 L1PA4 6152 + 5967 6141 140152 41 0 1 132 chain 6323 chr3 198022430 + 103147209 103147392 MER92B 628 + 122 341 182620 18 2 0 20 7 17 35 5 6 20 53 80 23 chain 12120 chr3 198022430 + 103163744 103163925 THE1B 368 + 0 182 151737 47 18 20 105 1 0 10 chain 87389 chr3 198022430 + 103167608 103168625 L1PA6 6164 - 6 1022 40612 604 0 3 237 4 0 172 chain 90402 chr3 198022430 + 103182264 103183468 L1PA8A 6298 + 4823 5967 39506 140 8 7 216 0 1 302 2 1 432 59 0 45 chain 530286 chr3 198022430 + 103197000 103203138 L1PA5 6144 - 3 6124 4153 140 7 8 20 4 1 677 0 1 672 1 0 1316 0 1 1097 17 0 994 0 1 151 0 1 8 0 1 327 3 1 704 chain 78692 chr3 198022430 + 103225199 103226265 MER11A 1151 - 0 1151 44193 289 5 28 24 32 5 49 3 8 189 1 0 156 20 21 81 14 9 72 0 89 131 chain 12590 chr3 198022430 + 103247018 103247155 L1PA2 6032 + 5895 6032 149877 137 chain 65488 chr3 198022430 + 103249756 103250488 SVA_D 2077 - 0 957 50344 535 0 225 197 chain 22709 chr3 198022430 + 103253044 103253481 MER4A1 472 - 0 455 117037 67 4 6 45 18 14 16 0 1 29 90 110 158 1 0 9 chain 26522 chr3 198022430 + 103254201 103254591 MER51B 395 + 0 381 97965 39 13 0 112 0 3 5 11 12 57 1 2 15 1 0 136 chain 169739 chr3 198022430 + 103261343 103263532 L1PA8 5853 - 0 2207 22082 92 2 1 19 2 1 39 2 1 11 7 21 21 8 7 32 2 0 44 1 0 373 0 1 83 16 15 83 2 0 532 1 2 281 1 6 128 0 4 237 0 3 170 chain 55124 chr3 198022430 + 103273130 103273833 LTR30 714 - 0 714 55629 168 13 12 20 0 2 51 11 12 126 0 1 90 0 8 224 chain 3229 chr3 198022430 + 103274903 103274937 L1PB3 3668 - 105 139 220431 34 chain 568674 chr3 198022430 + 103275381 103281413 L1HS 6032 - 0 6032 8 6032 chain 46029 chr3 198022430 + 103308926 103309442 L1PA5 6144 - 12 528 62015 516 chain 432808 chr3 198022430 + 103313780 103319429 HERVL-int 5654 - 0 5654 9243 269 2 1 19 4 1 67 4 1 5 0 3 62 8 0 4 1 0 12 1 6 92 10 13 96 5 0 96 45 52 759 0 1 124 0 4 58 0 1 1359 0 1 209 9 10 79 1 11 16 5 6 400 0 1 199 9 10 80 11 6 40 11 19 4 1 0 72 25 2 282 0 3 494 6 7 177 1 3 225 0 1 87 6 7 98 chain 31916 chr3 198022430 + 103319429 103319861 MLT2A1 477 - 0 477 80987 51 6 46 57 1 0 150 19 23 7 0 1 95 0 1 46 chain 43439 chr3 198022430 + 103338426 103338956 L1PA5 6144 + 5649 6141 64884 236 1 0 157 37 0 99 chain 24201 chr3 198022430 + 103351940 103352269 THE1C 375 + 2 333 109207 123 13 14 45 1 2 147 chain 58907 chr3 198022430 + 103411349 103412050 L1PA7 6471 + 5772 6468 53450 118 1 2 560 6 0 16 chain 66242 chr3 198022430 + 103428785 103429543 L1PA3long 6157 - 1 754 49987 395 8 3 355 chain 54708 chr3 198022430 + 103429543 103430149 L1PA3long 6157 + 4755 5363 55843 521 0 3 21 1 0 63 chain 45037 chr3 198022430 + 103446670 103447246 LTR12_ 688 + 0 688 63008 412 1 103 150 0 10 13 chain 36879 chr3 198022430 + 103461912 103462330 L1PA4 6152 - 6 427 73687 43 0 3 375 chain 9631 chr3 198022430 + 103466912 103467068 THE1D 372 - 2 159 162435 78 26 27 52 chain 61583 chr3 198022430 + 103469187 103469875 L1PA3long 6157 + 5467 6157 52079 450 8 10 230 chain 69441 chr3 198022430 + 103477589 103478571 L1PA8 5853 + 4875 5853 48634 135 2 0 16 3 4 122 55 58 260 0 1 93 1 0 44 2 0 69 16 14 48 3 2 19 1 0 93 chain 24564 chr3 198022430 + 103483203 103483478 AluY 311 + 26 302 107171 106 0 1 169 chain 24239 chr3 198022430 + 103498497 103498776 AluY 311 + 10 290 109001 115 1 2 163 chain 11871 chr3 198022430 + 103529453 103529600 L1P4 1494 - 1161 1308 152735 147 chain 29581 chr3 198022430 + 103547920 103548229 AluYa5 310 - 1 310 86264 309 chain 4878 chr3 198022430 + 103550252 103550310 L1P 111 - 38 96 196502 58 chain 47186 chr3 198022430 + 103550310 103550967 L1PA8 5853 + 5199 5853 61055 357 12 15 37 14 12 55 5 4 12 1 0 47 7 6 16 1 0 93 chain 90740 chr3 198022430 + 103600114 103601160 L1PA5 6144 - 1 1047 39379 10 3 1 142 1 2 584 0 1 306 chain 14679 chr3 198022430 + 103603232 103603509 THE1B 368 - 76 359 142333 43 83 87 117 0 2 34 chain 8491 chr3 198022430 + 103617641 103617769 Tigger1 2417 + 2204 2335 168346 45 0 1 5 8 9 35 0 1 35 chain 12839 chr3 198022430 + 103618580 103618733 L1PA3long 6157 + 6006 6157 148893 17 2 0 134 chain 6106 chr3 198022430 + 103624775 103624878 MER2 342 + 143 251 184370 72 12 17 19 chain 112382 chr3 198022430 + 103649046 103650475 L1PA7 6471 - 14 1426 33565 753 1 4 30 25 0 3 6 0 47 1 4 13 0 4 20 2 0 105 0 5 18 0 1 405 chain 212529 chr3 198022430 + 103651029 103653471 L1PA5 6144 + 3688 6139 18324 140 0 2 449 0 2 195 0 1 150 0 1 664 0 3 699 2 0 6 0 2 137 chain 139004 chr3 198022430 + 103692188 103693935 L1PA7 6471 - 17 1772 26303 134 6 0 6 1 7 187 0 1 395 14 16 6 0 2 82 1 4 127 0 1 273 0 1 16 1 0 247 1 0 250 chain 79328 chr3 198022430 + 103693936 103694931 L1PA7 6471 + 3688 4682 43894 141 11 0 56 0 1 115 3 0 206 0 1 277 1 8 174 0 4 11 chain 25231 chr3 198022430 + 103700122 103700412 AluY 311 + 14 303 103579 118 1 0 171 chain 3566 chr3 198022430 + 103704451 103704592 MER58A 224 - 25 175 214213 31 88 97 22 chain 155340 chr3 198022430 + 103755645 103757417 L1PA5 6144 - 20 1803 23943 826 1 5 276 0 7 669 chain 44752 chr3 198022430 + 103760526 103761047 L1PA4 6152 + 5609 6143 63328 223 0 7 128 0 4 18 5 0 17 0 7 130 chain 11805 chr3 198022430 + 103800377 103800506 L1PA2 6032 - 183 312 153005 129 chain 12891 chr3 198022430 + 103800506 103800658 L1PA2 6032 + 5861 6019 148663 8 4 0 11 0 10 129 chain 94363 chr3 198022430 + 103802894 103803971 L1PA5 6144 + 5062 6144 38242 231 8 13 838 chain 43189 chr3 198022430 + 103808769 103809474 MER11A 1151 + 463 1145 65186 75 0 1 71 19 7 8 0 12 38 13 21 114 0 26 26 43 0 21 18 0 37 0 1 60 23 25 139 chain 29187 chr3 198022430 + 103809574 103809926 MER11D 897 + 0 897 88111 15 1 0 34 0 546 302 chain 169919 chr3 198022430 + 103833898 103836311 L1PA11 4918 + 1884 4331 22059 89 26 27 146 9 8 33 2 4 6 2 0 15 1 0 20 19 16 7 0 4 67 12 15 183 0 2 12 0 28 167 5 6 91 16 14 84 21 22 4 1 0 95 6 0 635 6 9 196 9 14 428 chain 161196 chr3 198022430 + 103838319 103840152 L1PA5 6144 - 3 1837 23165 147 14 13 333 0 1 1024 0 1 315 chain 68700 chr3 198022430 + 103840152 103840928 L1PA5 6144 + 3517 4293 48944 776 chain 5236 chr3 198022430 + 103879523 103879581 tRNA-Glu-GAG_ 72 - 0 58 192669 58 chain 14835 chr3 198022430 + 103891694 103891874 MER11B 1079 - 899 1079 141825 180 chain 18084 chr3 198022430 + 103932794 103932998 L1PA3long 6157 + 5953 6157 132637 204 chain 18134 chr3 198022430 + 103937935 103938181 L1PA8 5853 - 0 245 132508 93 1 0 19 2 1 52 2 1 10 1 0 55 0 3 11 chain 178152 chr3 198022430 + 103938994 103941834 L1PA7 6471 - 6 2262 21150 435 1 0 222 295 0 184 0 3 257 309 0 187 0 5 11 10 11 201 2 0 272 2 6 74 6 10 183 1 6 118 7 8 63 chain 132626 chr3 198022430 + 103992405 103994528 HUERS-P3b-int 2065 - 35 2047 27493 89 1 0 57 4 0 53 1 0 13 21 16 54 5 6 13 3 1 89 1 0 25 1 0 63 1 5 29 42 19 27 1 0 210 0 2 5 6 4 29 1 2 132 0 3 185 0 2 47 12 11 11 1 0 54 2 1 134 0 3 34 5 6 18 3 0 264 126 45 87 6 8 69 15 11 53 8 10 13 chain 35050 chr3 198022430 + 104000313 104000776 MER9a3 513 - 46 513 76118 7 0 1 25 0 1 168 17 16 137 0 1 91 2 4 16 chain 371388 chr3 198022430 + 104000776 104005154 HERVK9-int 4720 - 0 4385 11046 14 18 13 95 5 3 54 24 29 1006 0 3 198 1 0 5 0 1 86 0 1 875 0 5 1997 chain 38555 chr3 198022430 + 104005803 104006288 MER9a3 513 - 0 488 71360 32 0 1 46 0 1 322 13 14 72 chain 492749 chr3 198022430 + 104022890 104029310 L1PA7 6471 + 32 6461 7235 243 20 20 108 1 2 231 0 13 240 5 6 282 10 0 8 0 10 353 0 4 95 2 3 109 2 1 401 0 2 475 0 3 522 7 8 241 4 0 74 0 1 32 22 22 71 1 0 29 4 3 80 0 1 272 3 0 212 0 1 110 0 2 163 2 3 132 0 5 124 0 1 266 31 10 390 1 0 4 0 1 200 1 0 510 0 1 145 1 2 34 9 10 138 chain 40797 chr3 198022430 + 104044971 104048936 L1PB1 5432 + 1218 5303 68181 177 1 0 7 2 0 5 3090 3310 87 12 11 288 81 2 12 8 5 16 37 29 53 2 1 16 1 0 44 1 0 15 3 0 7 chain 23296 chr3 198022430 + 104047963 104048250 AluSc 308 + 10 297 114224 287 chain 4961 chr3 198022430 + 104070820 104070934 MER4A1 472 + 342 458 195579 22 45 47 47 chain 34590 chr3 198022430 + 104081311 104081861 MLT2A2 560 - 0 560 76769 38 6 4 103 16 27 172 67 68 148 chain 15751 chr3 198022430 + 104092510 104092693 L1PA7 6471 + 5438 5621 139109 183 chain 69670 chr3 198022430 + 104092694 104093534 L1PA7 6471 + 5621 6460 48539 77 0 2 459 13 9 145 0 1 146 chain 3928 chr3 198022430 + 104096274 104096502 MLT1D 503 + 50 268 208448 42 166 156 20 chain 60092 chr3 198022430 + 104118996 104119787 LTR12 884 - 15 884 52776 492 2 0 89 25 0 84 1 0 28 0 107 44 1 0 25 chain 2973 chr3 198022430 + 104124205 104124249 L1MA3 4352 - 2777 2822 225582 14 1 2 29 chain 3703 chr3 198022430 + 104156929 104157040 MER20 218 + 41 181 211895 41 53 82 17 chain 30177 chr3 198022430 + 104158771 104159205 LTR7Y 441 - 0 441 84249 209 56 72 57 9 0 103 chain 289723 chr3 198022430 + 104160455 104164184 HERVH-int 3825 - 0 3825 14039 79 1 0 146 9 14 36 0 2 210 8 218 36 12 14 191 0 1 4 1 0 1158 8 35 239 0 1 203 15 0 171 0 2 286 1 0 49 2 1 7 0 20 30 3 23 11 23 0 7 3 0 12 127 0 15 28 0 24 1 0 10 1 0 38 5 0 28 1 3 278 0 11 212 chain 3422 chr3 198022430 + 104163501 104163543 HERVH-int 3825 - 3127 3169 216740 42 chain 28726 chr3 198022430 + 104164195 104164619 LTR7Y 441 - 11 441 90225 99 1 0 99 56 72 57 9 0 103 chain 485155 chr3 198022430 + 104182690 104188820 L1PA6 6164 - 2 6164 7553 6 2 0 243 0 1 596 0 4 416 4 6 241 1 0 19 0 1 256 0 1 676 2 0 479 5 6 14 0 2 528 0 19 324 0 1 877 8 7 243 0 1 205 7 8 36 0 6 136 8 25 206 7 6 71 8 9 14 5 4 6 0 1 14 19 0 448 chain 5059 chr3 198022430 + 104203010 104203066 L1P3 4156 + 1458 1514 194540 56 chain 510962 chr3 198022430 + 104203495 104209959 L1PA7 6471 + 0 6457 6074 83 1 0 326 0 3 71 0 1 124 5 4 119 9 5 201 9 17 35 1 2 343 0 1 335 5 6 359 1 0 26 1 2 74 0 1 189 6 0 19 1 2 232 3 0 58 1 3 217 0 1 237 0 4 429 1 0 49 0 5 232 0 1 7 7 6 180 1 0 66 29 10 121 0 2 5 2 0 601 6 5 132 1 0 491 0 1 178 1 0 23 12 16 49 5 6 395 4 1 196 1 5 6 4 0 139 chain 33371 chr3 198022430 + 104240870 104241335 LTR2B 499 + 34 499 78617 10 10 0 67 0 12 14 12 0 17 25 36 129 1 0 180 chain 95192 chr3 198022430 + 104246834 104247895 L1PA3long 6157 - 0 1063 38035 5 2 0 139 2 5 442 0 1 471 chain 36928 chr3 198022430 + 104263192 104263634 LTR2 463 + 0 463 73618 162 0 21 6 1 0 236 0 1 37 chain 55786 chr3 198022430 + 104264131 104264886 MER4E1 777 + 0 767 55253 23 1 0 223 1 0 4 0 1 119 0 20 19 0 1 23 1 0 90 42 35 209 chain 17489 chr3 198022430 + 104284258 104284486 AluY 311 + 52 290 134292 78 4 5 110 2 1 18 0 10 16 chain 41155 chr3 198022430 + 104294051 104294616 L1PA10 4194 - 44 614 67706 34 3 0 33 2 3 230 0 2 122 1 2 12 0 3 91 4 5 33 chain 2787 chr3 198022430 + 104303196 104303260 MER53 195 + 30 92 228909 27 20 18 17 chain 7253 chr3 198022430 + 104347024 104347110 L1PA5 6144 + 6054 6144 175747 75 0 4 11 chain 4768 chr3 198022430 + 104349640 104349697 MSTA-int 1630 + 1253 1310 197727 57 chain 6444 chr3 198022430 + 104360474 104360564 L1MA1 4479 + 4055 4142 181680 52 3 0 35 chain 35119 chr3 198022430 + 104385014 104385498 THE1B-int 1605 + 1119 1596 76030 27 10 11 244 14 0 82 0 6 107 chain 23356 chr3 198022430 + 104389954 104390253 AluSg7 307 + 11 296 113896 115 0 1 161 15 0 8 chain 3883 chr3 198022430 + 104396947 104397022 LTR12F 595 + 144 210 209131 31 19 10 25 chain 499190 chr3 198022430 + 104409804 104415959 L1PA6 6164 - 8 6164 6883 183 6 0 131 0 1 458 6 9 93 0 7 151 0 1 1030 0 1 395 34 5 211 0 4 286 0 1 855 15 0 33 0 3 690 0 8 201 0 3 144 0 9 218 0 13 9 3 0 6 0 3 120 1 0 18 9 6 84 8 9 244 7 6 104 1 0 23 0 8 167 0 1 42 35 28 134 chain 9499 chr3 198022430 + 104416307 104416444 L1P2 5180 + 828 961 163078 16 9 6 21 1 0 90 chain 31902 chr3 198022430 + 104419714 104420165 MER4A1 472 + 0 472 81009 18 0 1 6 6 5 195 31 52 195 chain 30196 chr3 198022430 + 104444704 104445169 MLT2A2 560 - 101 560 84202 41 0 11 94 1 0 140 16 13 10 0 1 78 33 19 52 chain 5522 chr3 198022430 + 104461029 104461109 MADE1 96 - 0 96 189817 30 4 20 46 chain 31128 chr3 198022430 + 104492322 104492762 MLT2A1 477 + 2 477 82290 166 5 2 13 0 1 19 0 1 178 7 3 10 10 46 24 0 4 8 chain 38228 chr3 198022430 + 104498148 104498689 LTR12F 595 + 0 568 71805 80 25 0 20 0 12 31 3 1 33 5 47 344 chain 14031 chr3 198022430 + 104525826 104525980 L1PA3long 6157 - 1 155 144458 154 chain 10009 chr3 198022430 + 104539796 104539954 THE1B 368 + 211 355 160541 83 27 13 48 chain 6026 chr3 198022430 + 104541780 104541854 THE1B-int 1605 + 1526 1599 185017 69 1 0 4 chain 8745 chr3 198022430 + 104625451 104625620 LTR12C 1709 + 987 1203 166950 97 53 100 19 chain 266069 chr3 198022430 + 104646623 104650763 L1PB1 5432 - 8 3771 15388 4 1 0 16 1 0 7 2 5 22 1 0 21 31 26 14 14 5 8 3 0 15 4 22 17 27 5 16 2 1 53 2 0 10 5 1 9 1 0 9 1 0 24 1 0 5 8 7 285 13 0 7 1 7 174 1 0 182 0 1 351 1 2 107 8 7 247 2 4 144 0 1 4 1 0 55 329 0 568 17 18 96 1 0 14 0 1 80 11 10 100 0 1 60 5 9 70 23 9 133 1 0 331 37 36 327 chain 23442 chr3 198022430 + 104668657 104669011 THE1C 375 - 19 375 113421 7 1 0 136 3 6 19 7 9 59 3 0 34 17 18 68 chain 28966 chr3 198022430 + 104728047 104728514 MER4A1 472 + 0 472 89152 14 7 11 28 2 1 171 1 23 16 28 7 70 1 0 40 21 23 68 chain 18308 chr3 198022430 + 104777590 104777843 AluSg 306 + 38 292 132057 103 3 0 6 1 4 106 6 7 28 chain 17977 chr3 198022430 + 104828942 104829147 THE1B-int 1605 - 5 210 132919 205 chain 36622 chr3 198022430 + 104829263 104829706 L1PA7 6471 + 6025 6467 74066 292 1 2 140 2 0 8 chain 73806 chr3 198022430 + 104831810 104832793 L1PA11 4918 + 3459 4414 46614 348 24 5 519 14 6 51 7 6 20 chain 20368 chr3 198022430 + 104853295 104853605 HUERS-P3b-int 2065 + 1680 1979 126005 48 3 1 73 37 33 49 4 0 57 1 0 38 chain 14787 chr3 198022430 + 104866468 104866658 THE1A 353 - 0 190 141979 119 0 1 32 1 0 38 chain 23368 chr3 198022430 + 104866690 104867034 THE1A 353 - 0 353 113826 118 2 1 4 0 1 76 0 13 30 1 0 38 13 9 36 4 5 22 chain 121024 chr3 198022430 + 104867034 104868901 THE1A-int 1579 - 0 1579 30687 11 0 1 204 1 2 35 6 7 34 310 2 79 5 1 673 1 20 65 5 7 438 chain 3096 chr3 198022430 + 104875411 104875486 MER4D 903 + 50 120 222998 14 12 9 16 8 6 25 chain 39821 chr3 198022430 + 104876257 104876771 MER41A 554 - 0 522 69593 77 10 16 146 0 1 221 0 1 60 chain 35513 chr3 198022430 + 104905012 104905423 L1PA5 6144 - 0 416 75537 49 0 3 126 0 2 236 chain 53682 chr3 198022430 + 104905423 104906047 L1PA5 6144 + 5098 5729 56555 202 5 3 349 0 1 31 0 8 37 chain 125114 chr3 198022430 + 104910483 104912057 L1PA8 5853 + 4299 5850 29356 264 16 2 21 13 0 40 0 13 352 8 6 97 1 0 33 1 0 12 0 3 420 1 0 48 3 0 68 2 1 14 1 0 51 1 0 16 2 1 89 chain 30609 chr3 198022430 + 104936306 104936669 L1PA6 6164 - 299 662 83191 363 chain 20967 chr3 198022430 + 104936713 104936976 L1PA6 6164 + 5887 6150 124046 41 0 4 168 5 1 49 chain 14576 chr3 198022430 + 104938271 104938489 L1PB1 5432 - 329 556 142666 12 0 4 23 12 13 32 1 5 138 chain 24646 chr3 198022430 + 104940383 104940658 AluY 311 + 19 295 106741 113 0 1 162 chain 22117 chr3 198022430 + 104957985 104958277 L1PA7 6471 - 4 289 119719 6 7 0 140 2 0 7 1 2 116 0 1 13 chain 31039 chr3 198022430 + 104981584 104981932 L1PA5 6144 - 377 725 82456 348 chain 33273 chr3 198022430 + 104981932 104982315 L1PA5 6144 + 5757 6144 78765 372 0 4 11 chain 19239 chr3 198022430 + 104987744 104988082 THE1C 375 + 0 341 129416 21 4 0 157 76 83 80 chain 3822 chr3 198022430 + 104996089 104996132 L1PA4 6152 + 6028 6071 210056 43 chain 541700 chr3 198022430 + 105015073 105021063 L1PA3long 6157 + 6 6156 2559 146 0 1 173 0 3 447 0 128 4550 0 26 355 0 2 319 chain 114749 chr3 198022430 + 105026527 105027892 L1PA7 6471 - 3385 4759 32862 215 0 1 355 0 1 44 0 6 437 1 0 77 0 2 236 chain 271300 chr3 198022430 + 105027899 105031372 L1PA7 6471 + 3107 6460 15119 99 5 1 39 0 2 55 0 1 226 17 0 273 3 1 31 0 1 148 0 1 19 7 0 202 117 0 291 0 8 277 6 7 166 5 4 372 0 7 135 0 4 114 2 0 23 0 3 228 0 1 285 0 1 328 chain 6933 chr3 198022430 + 105056608 105056704 MLT1A1 405 + 18 112 177947 6 1 0 13 1 0 75 chain 138722 chr3 198022430 + 105109872 105111769 L1PA10 4194 - 33 1946 26363 11 1 0 34 3 0 34 1 0 370 0 9 289 7 22 54 1 0 12 1 0 65 2 3 53 0 1 68 5 8 69 11 12 91 2 0 273 4 8 11 32 24 28 6 5 56 1 0 4 0 1 10 0 1 4 1 0 283 chain 210550 chr3 198022430 + 105124148 105128540 L1PB1 5432 + 1710 5423 18464 80 7 12 480 1416 748 335 0 1 132 1 9 66 8 12 147 1 0 42 0 1 154 1 0 78 0 10 272 0 2 490 0 1 116 1 0 20 0 1 72 0 3 109 3 2 9 13 0 24 1 0 6 1 0 7 23 17 48 23 21 40 5 4 15 50 36 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 49646 chr3 198022430 + 105124715 105125330 PABL_A 660 - 0 625 59278 219 1 2 71 3 0 81 0 1 66 0 3 89 1 0 38 0 9 46 chain 22352 chr3 198022430 + 105154762 105155068 THE1B 368 - 62 368 118693 18 2 1 114 2 1 47 1 0 80 0 5 25 2 0 15 chain 148072 chr3 198022430 + 105170966 105172776 L1PA8A 6298 - 8 1818 24867 90 0 1 9 1 2 86 15 10 148 1 0 279 0 2 915 0 2 266 chain 4333 chr3 198022430 + 105190804 105190994 L1MA8 2339 - 215 397 202795 5 3 0 19 57 55 33 35 34 23 5 3 10 chain 27536 chr3 198022430 + 105195658 105196015 THE1A 353 + 0 353 94550 109 2 1 92 2 0 77 1 0 74 chain 25179 chr3 198022430 + 105210813 105211161 THE1C 375 - 0 345 103854 167 21 18 8 0 3 59 3 0 90 chain 24601 chr3 198022430 + 105216607 105216889 AluY 311 + 14 297 106988 118 0 1 164 chain 30103 chr3 198022430 + 105239863 105240176 AluYb8 318 + 0 313 84475 313 chain 30436 chr3 198022430 + 105282512 105282830 AluYb8 318 - 0 318 83563 318 chain 51431 chr3 198022430 + 105290933 105291580 L1PA7 6471 - 1 652 58018 90 0 3 42 1 2 514 chain 214881 chr3 198022430 + 105306183 105308484 L1HS 6032 - 0 2302 18162 1707 0 1 594 chain 239331 chr3 198022430 + 105308484 105311031 L1HS 6032 + 1217 3764 16809 2547 chain 30016 chr3 198022430 + 105319993 105320381 MLT2A1 477 - 96 470 84754 186 1 0 25 4 1 72 10 0 90 chain 368505 chr3 198022430 + 105320388 105325313 HERVL-int 5654 - 0 5654 11140 91 0 3 106 0 2 236 1 0 126 0 192 256 1 0 471 0 858 677 9 10 117 0 1 6 1 0 427 5 6 156 6 8 82 1 2 88 336 9 11 13 2 75 0 15 732 0 1 186 5 0 199 2 0 503 chain 26574 chr3 198022430 + 105326029 105326426 MLT2A1 477 - 94 477 97748 106 18 17 50 8 7 33 4 1 76 9 0 93 chain 99499 chr3 198022430 + 105343676 105344773 L1PA4 6152 + 5042 6143 36904 240 0 4 857 chain 10672 chr3 198022430 + 105356982 105357098 L1PA3long 6157 - 2 118 157522 116 chain 133194 chr3 198022430 + 105445397 105447009 L1PA7 6471 - 1 1623 27393 21 2 0 171 0 1 515 1 0 62 0 2 66 5 9 145 0 5 566 0 1 58 chain 23358 chr3 198022430 + 105447017 105447287 L1PA7 6471 + 4519 4789 113884 270 chain 23128 chr3 198022430 + 105473867 105474122 L1HS 6032 - 0 251 115003 39 4 0 212 chain 11283 chr3 198022430 + 105507209 105507393 MER30 238 - 0 238 155118 37 1 28 43 8 22 72 7 20 16 chain 84159 chr3 198022430 + 105514901 105516148 L1PA15 4387 + 3137 4366 41835 31 3 0 258 1 0 4 0 1 13 1 0 20 0 3 27 1 0 31 0 1 38 3 4 112 0 5 128 0 2 77 4 2 23 0 3 12 1 0 31 0 1 59 22 10 58 0 1 6 5 6 27 1 0 54 1 0 17 20 15 45 0 1 4 6 3 46 1 0 14 5 0 26 1 0 10 chain 62174 chr3 198022430 + 105534298 105535059 L1PA7 6471 + 5717 6470 51816 293 0 2 210 9 1 227 0 2 5 5 1 12 chain 31923 chr3 198022430 + 105538704 105539135 MER1A 529 - 0 431 80976 69 3 4 326 12 11 21 chain 27901 chr3 198022430 + 105598746 105599055 AluYa5 310 - 3 310 93366 105 0 1 83 3 0 118 chain 22637 chr3 198022430 + 105601436 105601728 AluY 311 + 0 293 117388 52 2 1 79 0 1 70 7 8 82 chain 30591 chr3 198022430 + 105611262 105611694 LTR7B 505 - 0 505 83217 51 14 13 82 1 0 70 1 0 6 0 3 28 3 27 12 0 38 60 0 10 57 4 5 43 chain 25181 chr3 198022430 + 105658654 105658954 AluSp 311 - 12 311 103841 172 1 0 127 chain 52749 chr3 198022430 + 105680364 105681087 MER4E1 777 + 17 767 57160 136 4 5 125 0 2 10 23 22 89 0 11 40 16 12 26 0 1 10 0 1 34 4 7 35 0 13 171 chain 60031 chr3 198022430 + 105684631 105685391 LTR17 781 + 0 757 52807 59 1 0 97 1 0 171 1 0 430 chain 27065 chr3 198022430 + 105690791 105691145 THE1C-int 1605 - 1190 1605 96059 261 3 62 74 2 4 14 chain 79612 chr3 198022430 + 105712473 105713347 L1PA3long 6157 - 1 875 43609 874 chain 158067 chr3 198022430 + 105713347 105715067 L1PA3long 6157 + 3539 5258 23582 406 1 0 1313 chain 5551 chr3 198022430 + 105778120 105778187 L1PA8 5853 + 5750 5816 189553 10 1 0 56 chain 20401 chr3 198022430 + 105789821 105790070 AluSx3 311 + 30 280 125893 102 0 1 147 chain 84563 chr3 198022430 + 105791666 105792633 SVA_E 1901 - 1 1097 41697 535 0 127 259 6 13 34 8 5 4 1 0 75 0 1 30 1 0 5 1 0 8 chain 17738 chr3 198022430 + 105792700 105792906 SVA_F 1814 - 698 921 133598 34 0 1 119 1 16 9 0 1 43 chain 41127 chr3 198022430 + 105792922 105793730 SVA_F 1814 - 523 1439 67744 17 1 0 192 0 1 81 165 0 37 0 15 17 0 1 49 0 1 25 1 0 3 0 120 9 1 2 20 0 40 41 104 158 24 5 47 16 chain 2113 chr3 198022430 + 105793259 105793281 SVA_F 1814 - 694 716 156407 22 chain 2339 chr3 198022430 + 105793281 105793342 SVA_F 1814 - 540 601 132706 61 chain 2977 chr3 198022430 + 105793342 105793373 SVA_F 1814 - 777 808 156407 31 chain 9365 chr3 198022430 + 105793581 105793685 SVA_F 1814 - 618 722 106591 104 chain 2702 chr3 198022430 + 105793730 105793760 SVA_F 1814 - 767 797 106591 30 chain 76541 chr3 198022430 + 105793789 105794625 SVA_D 2077 - 1179 2015 45191 836 chain 8699 chr3 198022430 + 105805429 105805543 LTR9B 643 - 82 197 167197 63 1 0 4 0 1 22 0 1 24 chain 12324 chr3 198022430 + 105806230 105806411 MLT1A0 366 - 186 364 150918 6 1 0 114 1 0 6 0 1 28 8 6 17 chain 478438 chr3 198022430 + 105817431 105823735 L1PA8A 6298 - 7 6257 7784 106 1 0 6 0 1 436 0 5 165 1 0 82 2 1 672 4 0 116 0 1 4 5 4 60 4 5 385 6 9 354 1 2 478 2 0 27 1 0 17 7 4 54 0 1 49 0 1 277 0 4 222 1 2 126 2 0 38 0 3 4 1 0 69 9 1 104 7 8 305 0 1 277 1 2 301 5 0 370 2 0 16 4 5 91 0 2 180 1 0 4 1 2 24 0 1 14 15 17 316 42 39 14 2 0 76 6 0 19 1 0 47 1 0 7 20 15 8 1 0 5 2 1 8 1 0 13 26 21 10 1 0 4 1 0 13 4 3 8 1 0 20 19 10 20 3 0 16 17 10 7 3 0 7 2 1 17 chain 131913 chr3 198022430 + 105829375 105831474 SVA_F 1814 - 0 1479 27652 613 0 1 8 0 1 4 1 0 49 1 0 33 47 0 20 174 0 48 48 0 26 0 2 47 371 14 17 0 1 37 3 5 194 0 1 358 chain 1653 chr3 198022430 + 105830084 105830131 SVA_F 1814 - 788 835 136293 47 chain 4320 chr3 198022430 + 105830151 105830198 SVA_F 1814 - 553 601 189893 43 0 1 4 chain 2075 chr3 198022430 + 105830236 105830295 SVA_F 1814 - 877 939 136293 33 0 1 8 7 9 11 chain 1366 chr3 198022430 + 105830295 105830325 SVA_F 1814 - 523 553 84662 30 chain 2185 chr3 198022430 + 105830373 105830421 SVA_F 1814 - 601 649 84662 48 chain 16888 chr3 198022430 + 105830494 105830865 SVA_F 1814 - 725 802 84662 65 294 0 12 chain 2360 chr3 198022430 + 105830705 105830740 SVA_F 1814 - 729 767 234700 13 0 1 6 0 1 11 0 1 5 chain 11138 chr3 198022430 + 105855814 105856011 L1PREC2 3366 + 2572 2774 155676 33 26 33 105 11 9 22 chain 400669 chr3 198022430 + 105864031 105870551 L1PA7 6471 - 5 4900 10069 7 3 0 137 9 10 908 0 1 60 11 12 312 15 0 64 1 0 1119 1 0 345 2 1 4 0 1 68 0 1 21 4 1 54 8 9 103 1598 0 267 9 0 9 0 9 302 9 0 872 0 1 9 1 0 188 chain 131369 chr3 198022430 + 105867291 105868885 LTR12C 1709 + 0 1709 27786 463 19 10 29 9 12 136 0 119 68 1 0 275 1 0 112 0 4 275 0 1 123 1 0 82 chain 293623 chr3 198022430 + 105881958 105885895 L1PB1 5432 + 1168 5098 13789 72 1 0 84 29 29 20 46 47 411 0 1 262 0 4 400 8 0 81 6 7 240 1 0 180 0 1 7 1 0 206 10 9 1196 0 1 95 14 12 66 6 7 22 4 1 469 chain 42367 chr3 198022430 + 105896615 105897164 MLT2A2 560 - 12 560 66195 132 1 0 60 2 1 148 0 1 206 chain 4046 chr3 198022430 + 105900311 105900358 MADE1 96 - 5 52 206692 47 chain 452042 chr3 198022430 + 105937257 105942839 L1PA7 6471 - 6 5602 8695 6 4 0 842 0 3 309 5 2 258 8 0 58 0 1 23 1 5 284 0 8 178 0 1 254 13 6 217 0 5 5 3 0 164 4 0 257 0 3 73 1 0 119 0 5 275 0 4 467 0 1 33 1 2 75 0 2 31 0 4 246 0 10 194 1 2 269 6 5 465 9 10 360 9 0 55 chain 11721 chr3 198022430 + 105955523 105955764 MER61C 433 + 167 433 153379 31 15 12 28 10 36 18 31 35 72 1 0 23 1 0 11 chain 4182 chr3 198022430 + 105971227 105971276 L1PA15-16 3068 + 302 351 204813 49 chain 225058 chr3 198022430 + 105976038 105979985 MER61-int 3695 + 50 3303 17591 34 25 30 26 1 2 130 1 0 94 5 4 41 15 1 36 57 23 59 14 13 109 0 1 6 8 3 470 0 5 333 1 6 20 0 3 42 2 0 66 0 4 8 0 5 35 716 0 395 15 61 15 0 2 6 0 3 18 12 10 16 0 3 167 2 0 65 1 2 89 41 43 55 2 0 159 1 0 95 1 0 39 0 1 94 5 7 141 0 1 6 2 0 151 chain 60200 chr3 198022430 + 105977690 105978379 L1PA4 6152 + 5456 6141 52729 368 4 1 67 1 0 249 chain 48791 chr3 198022430 + 106025963 106026516 L1PA4 6152 + 5601 6151 59883 7 3 0 543 chain 22452 chr3 198022430 + 106037269 106037545 AluY 311 + 31 304 118233 92 2 0 10 1 0 171 chain 328904 chr3 198022430 + 106037545 106042406 L1PB1 5432 + 831 5404 12241 11 0 1 285 0 1 5 1 0 121 0 2 21 0 1 115 46 29 47 0 3 71 0 4 951 9 0 268 0 1 67 18 15 300 8 0 572 47 13 121 16 15 238 0 14 43 12 5 284 10 14 159 3 0 85 1 0 97 22 17 82 23 0 37 7 8 73 19 20 5 1 0 51 1 2 10 233 43 11 2 0 51 2 1 16 1 0 44 1 0 15 1 0 4 17 8 17 10 7 14 2 0 24 1 0 4 0 3 14 1 0 13 chain 139766 chr3 198022430 + 106077353 106079068 HERVL-int 5654 + 2614 4329 26175 896 1 2 676 7 6 135 chain 76243 chr3 198022430 + 106079486 106080360 MER11D 897 - 0 897 45340 281 0 23 593 chain 21922 chr3 198022430 + 106080956 106081299 THE1B 368 + 0 368 120539 44 0 15 113 2 1 25 41 51 93 9 10 16 chain 29419 chr3 198022430 + 106145679 106145989 AluYa5 310 - 0 310 86990 310 chain 9934 chr3 198022430 + 106148800 106148909 L1PA3long 6157 + 6048 6157 160914 109 chain 62968 chr3 198022430 + 106205676 106206449 LTR17 781 - 9 781 51462 374 7 6 64 0 1 18 10 0 181 0 9 119 chain 24630 chr3 198022430 + 106210978 106211258 L1PA5 6144 - 5 285 106828 280 chain 462848 chr3 198022430 + 106241517 106247696 L1PA8A 6298 + 28 6291 8295 6 6 0 6 1 0 16 38 27 17 8 5 14 23 14 12 5 4 8 2 1 12 10 8 8 1 0 3 2 0 15 2 0 4 1 0 12 27 24 13 4 0 9 2 0 38 14 15 11 8 0 42 6 7 30 2 0 12 18 15 76 1 0 257 1 2 309 0 1 14 2 1 15 36 28 104 0 8 133 0 1 352 0 1 5 1 0 466 0 125 174 0 2 71 0 1 387 0 4 345 58 60 12 1 0 15 1 0 34 0 3 111 1 0 13 0 1 84 0 1 204 0 1 4 14 14 269 1 0 348 0 4 110 14 5 496 1 0 6 2 4 237 0 3 50 0 1 5 10 11 313 0 5 433 0 1 115 chain 437773 chr3 198022430 + 106253324 106258897 L1PA8 5853 + 109 5846 9108 14 0 2 107 0 1 72 0 4 281 1 0 64 5 6 467 0 1 58 0 11 204 6 3 150 0 2 5 6 5 109 0 1 187 0 7 148 19 0 67 0 1 72 0 2 5 2 0 324 1 3 54 13 14 235 0 15 91 4 6 13 1 0 26 12 5 171 8 6 228 8 9 4 1 0 827 0 2 5 2 0 136 0 1 623 1 0 35 9 11 143 0 155 163 2 0 41 5 4 49 1 0 47 2 0 69 1 0 8 1 0 52 2 1 19 1 0 86 chain 36500 chr3 198022430 + 106291780 106292280 MLT2A1 477 - 0 476 74239 72 16 0 9 4 0 11 5 3 212 8 2 149 0 4 14 chain 24204 chr3 198022430 + 106296515 106296845 L1PB2 3958 + 3487 3814 109188 21 0 3 34 1 0 72 1 0 62 1 0 74 2 0 22 1 0 39 chain 15031 chr3 198022430 + 106315858 106316060 L1MA6 2487 - 1042 1243 141231 4 1 0 197 chain 137718 chr3 198022430 + 106370496 106372506 L1PREC2 3366 + 1067 3046 26526 232 1 0 6 0 7 115 0 3 77 1 2 77 3 0 179 2 0 275 17 11 27 1 0 57 0 1 103 0 1 4 1 0 28 0 1 240 0 5 30 0 1 203 2 0 47 9 8 32 0 1 10 1 0 4 5 0 9 29 25 16 6 1 16 3 1 13 0 1 15 4 1 11 37 23 20 6 4 36 chain 75666 chr3 198022430 + 106376203 106377227 L1PB2 3958 + 2618 3641 45680 29 9 10 59 0 1 28 0 1 178 1 0 92 0 4 140 0 1 150 1 0 49 12 11 68 2 0 9 7 3 89 1 0 57 0 2 18 1 0 24 chain 24454 chr3 198022430 + 106377242 106377596 THE1D 372 - 15 372 107784 17 1 0 146 33 37 157 chain 553565 chr3 198022430 + 106384140 106390171 L1PA2 6032 + 0 6028 996 257 1 0 1934 1 0 3065 1 0 772 chain 37056 chr3 198022430 + 106397534 106398024 LTR3B_ 500 + 0 500 73448 96 0 8 198 2 1 44 11 12 6 0 2 18 1 0 4 0 1 110 chain 8326 chr3 198022430 + 106407524 106407625 HY3 101 + 0 101 169239 101 chain 4939 chr3 198022430 + 106460469 106460521 L1PA8 5853 + 5761 5813 195804 52 chain 2302 chr3 198022430 + 106460531 106460559 L1PA8 5853 + 5824 5852 235366 28 chain 88307 chr3 198022430 + 106462807 106463858 MER11C 1089 + 0 1073 40261 246 0 9 62 0 4 137 0 2 132 0 1 95 0 4 23 1 2 20 0 1 335 chain 9774 chr3 198022430 + 106475598 106475762 L1MA3 4352 + 4161 4327 161722 7 0 3 32 0 1 11 0 7 12 5 1 25 2 0 22 1 0 6 1 0 27 1 0 12 chain 13401 chr3 198022430 + 106502497 106502669 L1PA7 6471 + 6298 6470 146707 172 chain 26721 chr3 198022430 + 106557746 106558054 AluSp 311 - 3 310 97254 188 1 0 119 chain 430732 chr3 198022430 + 106572355 106578070 L1PA8 5853 + 308 5853 9296 337 0 6 684 2 0 105 0 2 93 308 0 481 10 1 7 2 0 5 0 4 121 0 4 47 0 1 95 5 144 40 0 4 374 19 8 15 13 4 80 0 2 339 0 1 634 1 4 28 1 4 278 10 11 63 1 0 627 0 1 44 0 3 488 13 18 49 1 0 46 2 0 68 2 1 15 8 7 39 2 1 19 2 1 92 chain 5266 chr3 198022430 + 106580311 106580469 L1PB1 5432 + 5281 5422 192353 15 2 0 6 57 45 23 1 0 21 1 0 13 1 0 18 chain 23985 chr3 198022430 + 106590530 106590811 AluSp 311 - 14 291 110413 19 5 1 257 chain 14292 chr3 198022430 + 106610949 106611253 THE1B 368 + 0 347 143584 131 43 87 37 0 27 10 59 31 24 chain 5933 chr3 198022430 + 106620878 106620949 tRNA-Gln-CAA_ 72 - 1 72 185853 71 chain 22951 chr3 198022430 + 106641615 106642013 LTR7 482 - 0 482 115850 49 12 14 31 0 2 62 0 10 22 0 31 36 0 1 44 51 0 28 12 101 51 chain 301168 chr3 198022430 + 106643261 106646827 HERVH-int 3825 - 0 3825 13362 495 0 210 139 8 8 1257 4 31 773 7 4 113 3 8 7 2 0 61 21 0 22 1 0 41 1 52 24 1 0 10 1 0 39 5 0 531 chain 3777 chr3 198022430 + 106652906 106652959 MLT2C1 407 - 175 227 210715 33 1 0 19 chain 24333 chr3 198022430 + 106660066 106660347 L1PA6 6164 + 5868 6149 108465 281 chain 238525 chr3 198022430 + 106668974 106671588 L1PA3long 6157 + 3538 6157 16851 2171 0 1 392 0 4 51 chain 91351 chr3 198022430 + 106677308 106678341 L1PA4 6152 + 5104 6141 39174 202 0 4 737 5 4 69 0 1 20 chain 557691 chr3 198022430 + 106694291 106700323 L1PA2 6032 + 0 6031 536 2985 1 0 3046 chain 65742 chr3 198022430 + 106710041 106710762 L1PA3long 6157 + 5436 6157 50224 721 chain 61252 chr3 198022430 + 106717684 106718438 LTR12 884 + 0 884 52229 79 0 132 166 2 0 40 0 1 291 1 0 175 chain 315042 chr3 198022430 + 106757376 106761438 L1PA7 6471 + 2668 6470 12806 430 1 5 400 277 0 46 0 4 545 0 1 461 1 0 105 5 9 152 1 0 4 5 3 789 3 4 72 0 2 69 0 2 8 6 8 57 0 1 278 1 0 13 0 1 333 chain 18011 chr3 198022430 + 106791745 106792102 THE1B 368 - 6 367 132832 50 7 6 63 88 92 34 9 10 106 chain 26406 chr3 198022430 + 106797645 106797971 L1PA5 6144 - 0 327 98388 11 1 2 124 0 7 9 8 1 173 chain 32995 chr3 198022430 + 106855946 106856367 MER57A1 433 + 0 424 79224 282 1 0 112 3 7 23 chain 7147 chr3 198022430 + 106862540 106862653 MER5A1 166 - 1 115 176431 75 14 15 24 chain 548602 chr3 198022430 + 106862939 106869093 L1PA4 6152 + 6 6151 1626 574 1 0 118 7 0 1370 1 0 616 0 2 6 2 0 3459 chain 6550 chr3 198022430 + 106871500 106871573 MLT2B2 565 + 0 73 180852 73 chain 451073 chr3 198022430 + 106875276 106881268 L1PA8 5853 + 108 5853 8736 89 0 1 104 12 0 255 0 21 43 0 4 422 0 1 321 0 8 81 0 1 76 297 0 213 0 1 344 0 3 21 0 1 504 1 4 31 6 8 64 6 10 130 3 2 8 0 1 7 0 7 20 9 2 39 0 4 101 13 17 94 0 1 42 3 0 374 1 0 456 0 3 322 7 8 411 0 1 13 1 2 98 11 10 98 2 0 12 3 4 76 0 3 455 1 0 48 2 0 19 1 7 54 1 0 52 2 1 19 1 0 93 chain 5641 chr3 198022430 + 106881674 106881742 MER4A 717 - 241 309 188643 68 chain 103448 chr3 198022430 + 106883948 106888769 L1PA13 3608 + 122 3518 35888 13 2 0 29 2 1 12 12 9 11 34 23 60 16 15 121 1 0 12 1 0 17 2 0 16 6 2 19 1 0 18 3 1 15 2 0 17 5 4 93 3 1 134 2 0 295 310 0 64 0 14 25 1 5 18 2510 1737 131 307 0 43 1 7 5 2 0 19 2 0 32 1 0 20 0 1 92 2 0 63 1 0 56 1 0 4 2 0 47 2 0 5 2 0 15 32 28 13 5 0 14 chain 19878 chr3 198022430 + 106938759 106939039 AluSc8 310 + 10 286 127561 16 1 0 5 3 0 92 3 0 9 11 14 140 chain 16661 chr3 198022430 + 106951508 106951780 THE1B 368 + 0 368 136506 40 0 15 84 0 4 29 30 106 7 0 3 6 1 0 62 3 2 10 chain 119262 chr3 198022430 + 106951780 106953338 THE1B-int 1605 + 0 1605 31309 108 3 0 5 0 3 287 22 48 25 6 5 194 0 1 4 0 2 695 1 7 95 0 13 113 chain 3468 chr3 198022430 + 107023507 107023547 LTR37B 484 - 0 40 215840 40 chain 3884 chr3 198022430 + 107024970 107025030 MLT1D 503 - 2 61 209111 12 4 3 44 chain 124646 chr3 198022430 + 107030692 107032365 L1PREC2 3366 - 499 2210 29493 14 7 3 43 2 1 54 2 0 36 1 0 435 3 0 58 0 1 61 0 1 60 12 10 53 1 2 14 0 1 79 0 3 167 1 0 173 0 1 24 0 1 107 0 22 95 1 3 6 0 5 25 0 3 9 3 13 66 1 0 5 0 1 40 0 1 15 chain 553442 chr3 198022430 + 107052599 107058713 L1PA3long 6157 + 6 6157 1010 1312 0 35 853 1 3 3948 chain 7467 chr3 198022430 + 107072304 107072412 MER75 514 - 16 129 174361 11 4 9 93 chain 12181 chr3 198022430 + 107074114 107074304 MER30 238 + 25 237 151487 84 4 0 7 2 22 23 10 16 60 chain 27923 chr3 198022430 + 107074499 107074852 LTR46 455 + 0 345 93267 116 6 1 71 3 1 116 1 0 40 chain 6642 chr3 198022430 + 107078728 107078915 MLT1A0 366 + 0 194 180152 29 2 1 18 5 6 34 1 0 14 66 74 18 chain 4659 chr3 198022430 + 107080419 107080474 LTR40a 516 + 21 76 198969 55 chain 6167 chr3 198022430 + 107084044 107084124 MADE1 96 - 0 96 183821 37 1 17 42 chain 14310 chr3 198022430 + 107084125 107084393 L1PB4 2604 + 2303 2570 143533 24 5 1 42 54 52 57 0 6 67 1 0 18 chain 7421 chr3 198022430 + 107128618 107129028 L1M4c 1769 + 761 1177 174646 26 77 78 27 209 214 71 chain 23303 chr3 198022430 + 107161075 107161368 AluSc 308 + 0 294 114182 103 4 7 21 2 0 163 chain 8666 chr3 198022430 + 107180899 107181029 MER5A 189 - 9 141 167388 12 3 4 35 4 6 7 1 0 68 chain 468950 chr3 198022430 + 107188912 107195336 L1PA6 6164 + 3 6152 8073 193 13 14 106 184 13 28 43 16 21 16 17 8 2 0 30 19 0 55 15 5 56 57 0 4 19 0 172 21 0 46 0 17 286 0 3 334 39 40 397 0 1 325 1 0 135 2 0 72 0 1 786 0 1 6 3 0 32 1 0 41 0 3 27 9 6 198 9 12 105 0 3 85 0 1 4 9 7 295 0 3 588 4 5 43 43 42 277 0 7 837 3 0 180 1 21 139 chain 53297 chr3 198022430 + 107219998 107220596 L1PA5 6144 + 5546 6144 56829 222 1 0 42 0 1 333 chain 10389 chr3 198022430 + 107278659 107278827 AluJb 308 - 78 245 158744 43 3 1 29 25 26 68 chain 5073 chr3 198022430 + 107279811 107279868 MER20 218 - 47 104 194387 57 chain 8746 chr3 198022430 + 107288264 107288378 LTR7Y 441 - 48 164 166942 52 6 8 56 chain 114208 chr3 198022430 + 107288393 107290011 HERVH-int 3825 - 1425 3026 33027 304 5 10 479 1 0 4 0 1 171 9 0 189 28 13 42 86 87 26 2 0 32 1 0 13 36 40 190 chain 7425 chr3 198022430 + 107290557 107290664 LTR7B 505 - 0 106 174613 51 14 13 42 chain 15011 chr3 198022430 + 107370684 107370868 MER107 203 - 10 199 141290 31 1 3 61 0 3 91 chain 4566 chr3 198022430 + 107389148 107389204 L1MA5A 2387 + 2233 2289 200046 56 chain 543323 chr3 198022430 + 107411051 107417068 L1PA3long 6157 - 7 6157 2293 251 0 1 94 3 0 1191 0 1 254 0 4 2276 1 0 1174 0 128 34 0 1 512 0 1 75 0 1 152 chain 69611 chr3 198022430 + 107419302 107420066 L1PA4 6152 - 16 778 48568 243 0 1 94 3 0 424 chain 4538 chr3 198022430 + 107434276 107434331 Tigger4b 360 + 298 360 200364 8 0 7 47 chain 187965 chr3 198022430 + 107442262 107444362 L1PA5 6144 - 3 2107 20238 846 0 4 1254 chain 38592 chr3 198022430 + 107485495 107485953 L1PA7 6471 + 5902 6364 71302 188 0 1 94 0 3 176 chain 8483 chr3 198022430 + 107517589 107517712 MER30 238 - 0 130 168391 63 0 1 16 7 13 37 chain 39019 chr3 198022430 + 107537240 107537776 LTR12F 595 + 0 595 70720 100 6 18 28 2 0 21 18 60 78 0 3 206 1 5 76 chain 28614 chr3 198022430 + 107562892 107563202 AluYa5 310 + 0 309 90679 132 2 0 136 0 1 40 chain 47558 chr3 198022430 + 107569933 107570646 L1PB1 5432 + 4696 5377 60801 78 1 0 324 0 1 4 1 2 9 3 0 24 1 0 9 1 0 9 2 0 3 2 0 9 14 12 40 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 14 2 0 24 1 0 7 chain 24675 chr3 198022430 + 107591389 107591686 AluSp 311 - 12 310 106584 130 0 1 167 chain 231097 chr3 198022430 + 107604654 107607131 L1HS 6032 - 851 3327 17250 638 1 0 1838 chain 78338 chr3 198022430 + 107607131 107607968 L1HS 6032 + 5195 6032 44357 837 chain 39900 chr3 198022430 + 107636167 107636679 MER9a2 513 - 0 513 69454 137 2 0 55 9 13 42 22 21 245 chain 15432 chr3 198022430 + 107641134 107641358 MER30 238 - 0 238 140099 48 3 0 49 18 35 106 chain 8853 chr3 198022430 + 107656359 107656459 L1PA5 6144 - 354 454 166361 100 chain 31673 chr3 198022430 + 107656467 107656815 L1PA5 6144 + 5784 6137 81367 251 0 5 97 chain 18227 chr3 198022430 + 107667031 107667259 MER1A 529 + 257 486 132263 201 2 3 25 chain 4277 chr3 198022430 + 107687620 107687668 MER58C 217 - 15 63 203511 48 chain 3403 chr3 198022430 + 107694696 107694734 Arthur1C 363 - 240 278 217024 38 chain 43214 chr3 198022430 + 107729828 107730366 L1PA8 5853 - 0 533 65157 93 1 0 19 6 5 57 1 0 71 2 0 11 0 1 34 1 0 242 chain 110295 chr3 198022430 + 107744529 107745786 SVA_D 2077 - 16 2077 34130 603 0 539 40 0 117 81 0 156 234 7 0 106 0 2 167 3 0 16 chain 4292 chr3 198022430 + 107801372 107801427 LTR37A 408 + 313 368 203335 55 chain 3832 chr3 198022430 + 107822232 107822393 MER58A 224 - 0 170 209896 27 7 5 16 83 94 28 chain 10242 chr3 198022430 + 107825638 107825786 L1PA8 5853 + 5704 5850 159409 30 8 7 19 2 1 89 chain 25846 chr3 198022430 + 107843705 107844059 THE1C 375 + 0 363 100671 84 0 1 77 30 37 4 0 1 159 chain 2807 chr3 198022430 + 107855495 107855526 MER51A 677 - 282 313 228647 31 chain 29344 chr3 198022430 + 107862153 107862459 AluYb8 318 - 12 318 87326 306 chain 31407 chr3 198022430 + 107866635 107867113 MLT2A1 477 - 0 477 81802 20 1 0 30 47 43 210 9 13 22 0 1 49 12 11 78 chain 16251 chr3 198022430 + 107867397 107867597 L1PA7 6471 + 6257 6457 137610 200 chain 97042 chr3 198022430 + 107887338 107888563 L1PA8 5853 - 0 1227 37534 59 1 0 33 2 1 19 2 1 39 0 2 11 2 1 7 2 1 71 2 0 46 1 0 342 0 1 42 0 2 166 0 3 14 0 1 16 0 1 348 chain 99352 chr3 198022430 + 107888563 107889767 L1PA8 5853 + 3410 4613 36939 114 0 1 797 6 7 41 13 10 233 chain 16776 chr3 198022430 + 107906787 107906992 L1PA5 6144 - 0 206 136179 68 1 2 136 chain 11098 chr3 198022430 + 107908978 107909149 THE1D-int 1627 + 1454 1622 155819 46 10 5 18 2 1 53 1 0 12 0 3 25 0 1 4 chain 28474 chr3 198022430 + 107962718 107963081 THE1C 375 + 0 375 91288 41 0 3 65 0 10 230 1 0 26 chain 115842 chr3 198022430 + 107963081 107964656 THE1C-int 1605 + 0 1605 32516 230 16 35 180 0 7 255 1 2 244 54 0 8 0 54 160 2 3 5 2 0 71 7 11 340 chain 28724 chr3 198022430 + 107964656 107965030 THE1C 375 + 0 375 90230 206 1 2 85 0 1 56 1 0 25 chain 546564 chr3 198022430 + 107976527 107982543 L1PA2 6032 + 2 6028 1873 255 1 0 107 0 1 1491 1 0 408 0 4 781 1 0 94 0 2 682 1 0 167 0 2 1186 0 4 700 0 1 141 chain 26770 chr3 198022430 + 107987074 107987425 THE1B 368 + 0 368 97088 35 5 20 20 0 4 93 1 0 121 1 0 75 chain 2996 chr3 198022430 + 107991791 107991985 LTR30 714 - 6 198 57872 70 7 5 117 chain 178246 chr3 198022430 + 107992334 107994329 L1PA4 6152 - 1 2022 21141 246 0 18 54 0 1 524 0 4 1152 0 3 19 chain 25073 chr3 198022430 + 107994329 107994606 L1PA4 6152 + 3827 4105 103940 134 0 1 143 chain 7999 chr3 198022430 + 107994617 107995135 LTR30 714 - 198 714 57872 22 0 19 9 36 17 195 1 0 39 1 0 215 chain 92169 chr3 198022430 + 108009757 108011073 L1PREC2 3366 + 1702 2988 38913 40 8 8 21 1 0 191 2 1 5 0 2 48 7 0 264 0 2 85 0 2 106 0 1 87 7 10 177 7 5 49 1 0 42 9 5 14 29 21 17 5 8 9 2 0 30 3 0 14 19 5 17 chain 40873 chr3 198022430 + 108027672 108028322 L1MA1 4479 - 289 912 68058 18 9 0 13 4 2 6 1 0 9 1 0 35 2 0 29 1 0 126 3 0 6 1 0 28 0 1 49 1 0 4 0 1 4 1 0 14 13 11 8 1 0 71 1 0 16 2 0 7 18 17 148 chain 35227 chr3 198022430 + 108067497 108067912 L1PA7 6471 - 1 427 75889 204 0 11 211 chain 48119 chr3 198022430 + 108067914 108068492 L1P3 4156 + 3383 3956 60390 135 0 1 7 15 9 421 chain 233592 chr3 198022430 + 108082842 108085778 L1PA8 5853 - 6 2959 17108 86 2 1 17 8 7 35 25 23 69 2 0 47 1 0 350 7 5 196 7 5 602 0 1 160 15 28 343 10 12 46 3 6 339 0 1 133 0 1 119 11 12 84 0 6 219 chain 198063 chr3 198022430 + 108085778 108088167 L1PA8 5853 + 413 2789 19319 221 0 6 10 7 1 15 0 1 364 0 1 383 1 0 595 35 8 78 0 4 174 0 4 185 0 1 16 0 4 305 chain 546050 chr3 198022430 + 108088173 108094337 L1PA4 6152 + 0 6152 1939 725 5 6 151 12 0 49 4 0 631 26 26 271 0 1 141 1 2 1180 1 0 379 1 0 248 0 1 128 1 0 158 0 2 1776 1 2 119 1 2 136 1 0 18 chain 9592 chr3 198022430 + 108094370 108094483 L1P3 4156 + 3383 3497 162629 8 0 1 105 chain 32139 chr3 198022430 + 108096710 108097155 LTR7B 505 + 0 490 80628 27 5 6 72 0 10 69 6 13 30 0 24 27 0 2 41 0 2 39 1 0 26 0 1 52 2 1 48 chain 51291 chr3 198022430 + 108097649 108098272 L1PA8A 6298 + 5657 6291 58119 14 0 3 217 0 3 79 1 3 117 0 2 98 0 1 97 chain 33134 chr3 198022430 + 108150485 108150903 THE1B-int 1605 + 2 424 79010 120 5 6 113 0 3 180 chain 23671 chr3 198022430 + 108152360 108152714 THE1B 368 + 2 365 112195 42 5 20 110 1 0 26 4 0 101 0 1 4 24 22 37 chain 19859 chr3 198022430 + 108162785 108163002 L1PA3long 6157 + 5937 6155 127625 70 0 1 147 chain 5430 chr3 198022430 + 108207836 108208051 L1MA9 1812 - 362 574 190703 29 1 0 12 3 0 21 2 1 23 96 102 18 4 0 6 chain 25660 chr3 198022430 + 108215735 108216033 AluYk4 311 + 8 310 101450 34 0 1 235 0 3 29 chain 4029 chr3 198022430 + 108253984 108254048 MER5A 189 + 46 112 206946 29 8 10 27 chain 6278 chr3 198022430 + 108267284 108267450 MER58A 224 + 50 218 182956 37 4 0 7 1 5 18 50 52 49 chain 9008 chr3 198022430 + 108272646 108272749 AluY 311 + 29 132 165548 103 chain 22205 chr3 198022430 + 108340419 108340779 L1MA2 4263 + 3725 4076 119328 71 13 10 101 0 1 26 33 31 51 0 2 38 7 0 20 chain 6311 chr3 198022430 + 108370370 108370444 Tigger3c 601 + 435 509 182710 74 chain 541506 chr3 198022430 + 108374358 108380491 L1PA4 6152 + 0 6152 2587 245 0 1 160 0 2 753 0 3 72 0 1 185 0 5 34 0 1 144 8 4 336 1 0 1570 1 0 335 0 5 39 0 1 43 1 0 939 6 7 419 0 4 836 0 2 6 chain 118135 chr3 198022430 + 108399010 108400937 L1PA7 6471 + 4327 6468 31759 86 487 679 173 0 4 197 0 5 23 0 13 48 1 0 59 0 3 703 2 4 137 4 0 7 chain 24223 chr3 198022430 + 108408258 108408552 AluY 311 + 10 301 109066 119 3 0 172 chain 8988 chr3 198022430 + 108410139 108410238 L1PA3long 6157 + 6058 6157 165671 99 chain 26153 chr3 198022430 + 108413213 108413571 THE1B 368 - 0 368 99394 168 2 0 27 2 1 29 0 4 74 1 4 16 0 5 6 0 3 16 2 0 15 chain 34413 chr3 198022430 + 108415786 108416246 L1PA8 5853 + 5397 5853 77039 40 0 2 82 0 2 41 1 0 45 5 3 68 1 0 10 1 0 50 2 1 10 1 0 9 1 0 93 chain 9811 chr3 198022430 + 108422577 108422683 AluYb8 318 + 196 302 161540 106 chain 27701 chr3 198022430 + 108441148 108441522 THE1D 372 - 0 372 94038 128 0 6 45 0 5 112 18 0 31 0 5 40 chain 5950 chr3 198022430 + 108455785 108455858 LTR18B 584 + 99 172 185678 73 chain 565855 chr3 198022430 + 108468247 108474272 L1HS 6032 + 7 6032 166 6025 chain 24057 chr3 198022430 + 108514497 108514786 AluSg7 307 - 19 307 110004 162 1 0 126 chain 49483 chr3 198022430 + 108534480 108535031 L1PA4 6152 + 5253 5818 59401 55 0 14 496 chain 29404 chr3 198022430 + 108535032 108535365 L1PA4 6152 + 5818 6151 87043 333 chain 28942 chr3 198022430 + 108582534 108582935 MER61B 427 - 0 415 89268 94 6 8 131 12 13 55 13 24 90 chain 23280 chr3 198022430 + 108586542 108586832 AluY 311 + 11 287 114294 46 4 0 69 10 0 161 chain 24373 chr3 198022430 + 108588980 108589269 AluSc5 308 + 2 291 108239 289 chain 26033 chr3 198022430 + 108599112 108599415 AluYk4 311 + 1 307 99888 9 0 1 141 1 3 152 chain 273729 chr3 198022430 + 108640652 108645328 L1PB1 5432 - 10 4013 14988 14 5 4 13 8 7 14 1 0 24 2 0 14 1 0 5 3 1 18 16 14 12 1 0 45 1 0 14 5 4 7 1 0 36 24 18 11 2 1 8 1 0 24 84 16 179 0 1 100 7 6 163 333 0 23 2 0 5 1 0 68 1 2 40 13 15 19 10 14 153 17 35 60 1 0 158 51 52 20 5 0 28 0 1 15 0 3 205 3 7 315 0 1 7 1 7 190 0 3 195 2 1 9 0 1 142 5 15 340 3 0 112 0 9 337 0 1 226 0 1 16 307 0 50 23 26 4 0 1 298 chain 28223 chr3 198022430 + 108641520 108641845 L1PA7 6471 - 4 342 92216 6 4 0 159 0 17 156 chain 20258 chr3 198022430 + 108656644 108656885 AluSg7 307 + 7 249 126352 123 1 2 117 chain 9223 chr3 198022430 + 108662600 108662783 L1PB1 5432 - 108 274 164436 16 15 6 6 3 0 16 1 0 43 7 6 10 3 2 52 2 0 9 chain 22136 chr3 198022430 + 108665977 108666307 Tigger2a 444 - 116 444 119644 52 1 8 8 7 0 122 14 8 77 0 4 49 chain 19585 chr3 198022430 + 108666981 108667324 MSTA 426 + 0 401 128417 100 6 28 6 0 3 22 0 4 36 2 1 4 5 0 11 35 50 31 7 27 78 chain 78141 chr3 198022430 + 108700647 108701584 L1PA6 6164 + 5048 6162 44442 263 1 5 191 0 2 189 1 0 41 1 175 78 0 1 4 1 0 7 8 6 152 chain 3452 chr3 198022430 + 108720216 108720255 MADE1 96 + 49 88 216168 39 chain 24601 chr3 198022430 + 108730361 108730656 AluSp 311 - 5 300 106991 295 chain 122578 chr3 198022430 + 108756295 108757760 L1PA6 6164 - 4 1474 30198 145 1 0 116 17 0 9 3 20 550 0 5 41 0 1 173 0 1 4 1 0 405 chain 20513 chr3 198022430 + 108787074 108787560 L1PB1 5432 - 8 458 125588 4 1 0 16 1 0 13 2 1 15 57 53 13 15 6 7 4 0 16 1 0 43 1 0 16 2 1 53 27 20 13 4 3 16 7 0 12 1 0 51 1 0 5 0 1 46 9 12 14 chain 47636 chr3 198022430 + 108794218 108794786 L1PA7 6471 - 1067 1641 60745 94 0 5 277 0 3 40 1 0 36 4 3 116 chain 89944 chr3 198022430 + 108794786 108795832 L1PA7 6471 + 5416 6470 39670 198 0 3 192 0 3 644 0 2 12 chain 22718 chr3 198022430 + 108798964 108799315 THE1B 368 - 0 364 116994 75 1 0 101 25 20 19 10 14 74 0 9 7 1 7 38 chain 75429 chr3 198022430 + 108806073 108807129 L1PA14 3548 + 2426 3456 45802 109 2 1 45 0 1 107 1 0 248 4 2 9 1 0 5 2 0 44 3 1 7 2 0 105 4 0 21 2 0 6 1 0 17 0 1 66 1 0 110 1 0 11 5 1 18 0 1 17 4 2 12 1 0 5 1 0 17 1 0 41 chain 161269 chr3 198022430 + 108842186 108843987 SVA_D 2077 + 6 2073 23155 4 1 0 6 1 0 6 1 0 6 1 0 9 1 0 853 0 269 28 0 1 256 0 1 628 chain 16248 chr3 198022430 + 108853959 108854209 L1PA8 5853 + 5610 5853 137620 60 0 1 8 1 0 9 21 19 28 3 0 5 2 1 19 1 0 93 chain 3573 chr3 198022430 + 108870145 108870194 MLT2D 439 - 0 62 214092 6 0 4 32 0 9 11 chain 118648 chr3 198022430 + 108882520 108883810 L1PA3long 6157 + 4868 6157 31559 277 1 0 1012 chain 14919 chr3 198022430 + 108895047 108895214 L1PA4 6152 + 5781 5948 141575 167 chain 27770 chr3 198022430 + 108895254 108895650 LTR7 482 - 6 482 93797 43 12 14 95 0 10 18 0 30 12 1 0 29 0 1 109 8 46 69 chain 31692 chr3 198022430 + 108909149 108909573 MER4A1 472 + 0 454 81336 46 1 0 99 0 6 44 1 5 20 0 1 5 2 22 206 chain 15410 chr3 198022430 + 108912602 108912776 L1PA4 6152 + 5976 6150 140167 174 chain 48018 chr3 198022430 + 108916007 108916576 L1PA7 6471 - 18 591 60472 19 0 1 67 1 2 48 0 1 177 0 1 257 chain 567752 chr3 198022430 + 108918719 108924750 L1HS 6032 + 0 6032 41 74 0 1 5957 chain 157867 chr3 198022430 + 108937451 108939357 L1P2 5180 + 5 1921 23614 58 1 2 85 1 0 52 1 0 45 1 0 208 9 8 52 1 0 272 0 15 47 1 0 1072 chain 39665 chr3 198022430 + 108939357 108939828 L1PA6 6164 + 5685 6156 69803 130 2 3 8 1 0 330 chain 319357 chr3 198022430 + 108955115 108959942 L1PA8 5853 + 1625 5853 12623 109 0 1 171 16 18 877 19 1 67 0 2 5 11 6 47 0 4 23 1 4 42 8 9 58 15 7 118 0 4 22 0 1 158 0 1 62 0 3 31 9 51 118 317 0 409 4 0 286 2 0 76 0 3 345 354 43 190 0 1 12 0 3 74 0 1 114 11 13 182 0 2 45 10 0 120 1 0 44 2 0 71 1 0 18 0 5 26 0 1 14 1 0 17 1 0 93 chain 23833 chr3 198022430 + 108964351 108964694 THE1A 353 - 14 353 111293 16 2 0 88 2 1 4 0 1 76 0 2 5 2 0 36 1 0 17 10 9 84 chain 124142 chr3 198022430 + 108964694 108966256 THE1A-int 1579 - 0 1579 29652 535 0 19 324 0 1 97 1 0 5 9 3 97 2 0 8 0 1 44 5 7 340 0 1 67 13 15 15 chain 24468 chr3 198022430 + 108966600 108966917 THE1A 353 - 35 353 107715 102 3 1 6 0 3 206 chain 22931 chr3 198022430 + 108967327 108967613 AluSp 311 + 10 290 115956 131 0 1 33 7 0 115 chain 33401 chr3 198022430 + 108975295 108975765 MLT2A2 560 - 78 560 78564 69 3 14 126 11 12 76 18 17 129 0 1 38 chain 25880 chr3 198022430 + 108982387 108982677 AluY 311 + 3 293 100525 290 chain 25565 chr3 198022430 + 109009744 109010030 AluYf4 310 - 15 301 101908 286 chain 7086 chr3 198022430 + 109016411 109016536 L1MC2 1988 + 1142 1274 176851 25 28 35 72 chain 2945 chr3 198022430 + 109018772 109018808 L1MC2 1988 + 1861 1897 226225 36 chain 25732 chr3 198022430 + 109027215 109027508 AluSp 311 - 18 311 101156 293 chain 24745 chr3 198022430 + 109060309 109060609 AluSz6 309 + 2 304 106200 8 0 3 4 1 0 287 chain 5811 chr3 198022430 + 109064459 109064528 L1MA5 2750 - 1743 1812 187028 69 chain 37916 chr3 198022430 + 109112288 109112763 LTR2B 499 + 9 499 72258 5 1 0 60 3 0 37 0 19 178 0 1 8 1 0 182 chain 306078 chr3 198022430 + 109123822 109129757 L1PA7 6471 - 2 3692 13167 351 0 5 492 1 0 953 0 4 102 5 0 54 0 4 926 280 63 347 1717 8 56 0 2 63 328 0 260 chain 3457 chr3 198022430 + 109135260 109135313 MLT1A 405 - 23 71 216042 39 5 0 9 chain 12322 chr3 198022430 + 109137714 109137852 L1PA7 6471 + 6328 6466 150926 138 chain 4260 chr3 198022430 + 109138995 109139076 L1MC4 1079 - 695 792 203740 30 17 33 34 chain 34336 chr3 198022430 + 109166003 109166551 L1M1 2793 + 2087 2602 77152 13 4 7 237 0 1 87 11 9 31 67 32 98 chain 13234 chr3 198022430 + 109171578 109171725 L1PA3long 6157 + 5995 6142 147345 147 chain 345678 chr3 198022430 + 109174758 109178623 L1PA4 6152 - 0 3861 11740 6 7 0 3593 4 7 255 chain 20755 chr3 198022430 + 109181227 109181574 THE1D 372 + 5 360 124778 99 1 0 33 49 54 19 13 14 49 0 3 84 chain 90241 chr3 198022430 + 109183983 109185002 L1PA4 6152 + 5124 6152 39563 472 0 1 310 0 2 99 0 1 132 0 5 6 chain 19189 chr3 198022430 + 109192455 109192800 L1PA15 4387 - 21 354 129561 10 1 0 27 4 3 11 3 1 44 17 14 30 9 11 14 4 0 16 2 1 54 1 0 25 1 0 72 chain 549506 chr3 198022430 + 109227052 109233247 L1PA3long 6157 - 4 6157 1514 119 0 4 275 4 0 264 1 0 1900 0 1 312 0 1 884 0 3 135 30 6 2051 2 1 67 21 0 130 chain 72815 chr3 198022430 + 109238334 109240609 L1PA6 6164 - 2 4318 12812 145 1 0 5 0 2 493 2 1 329 1 0 38 0 2027 412 0 3 43 1 0 305 0 2 26 0 11 474 chain 492370 chr3 198022430 + 109240622 109246330 L1PA5 6144 + 0 6128 7251 323 0 5 255 0 1 954 0 1 773 0 1 80 0 404 145 0 1 176 0 4 53 1 0 108 0 3 742 1 0 1237 0 1 724 1 2 135 chain 58316 chr3 198022430 + 109246351 109248173 L1PA6 6164 - 4318 6164 12812 282 0 1 771 0 3 41 54 50 61 3 7 52 3 4 64 11 10 77 1 2 18 1 0 20 25 33 154 3 2 70 0 9 58 0 4 53 chain 35120 chr3 198022430 + 109250671 109251842 L1M1 2793 - 1399 2416 76027 66 67 60 64 1 33 168 1 0 89 68 65 10 1 0 8 2 0 17 23 22 20 12 7 20 9 5 11 40 27 41 191 106 15 1 0 6 1 0 12 149 95 5 1 0 10 3 0 11 1 0 4 1 0 14 2 0 6 chain 522024 chr3 198022430 + 109257053 109263173 L1PA5 6144 + 0 6141 4959 182 0 14 500 1 2 471 9 0 143 0 1 480 1 0 584 0 3 327 0 1 1067 2 13 141 2 3 1361 5 9 541 0 2 290 7 0 6 chain 11051 chr3 198022430 + 109299509 109299763 L1PB1 5432 - 8 238 156008 4 1 0 16 1 0 13 1 0 21 9 8 16 2 0 14 13 10 14 24 12 16 2 1 42 1 0 16 2 1 26 chain 74433 chr3 198022430 + 109302150 109303249 MER11A 1151 + 0 1151 46302 79 7 15 134 1 0 30 0 2 34 0 11 45 51 0 182 0 12 73 0 5 60 6 9 11 3 4 30 7 11 69 0 2 16 1 59 91 15 14 87 7 6 60 chain 2126 chr3 198022430 + 109302481 109302511 MER11A 1151 + 314 344 233321 30 chain 39035 chr3 198022430 + 109307848 109308406 L1PB4 2604 + 1437 2003 70684 145 0 1 130 19 18 20 0 1 41 6 7 77 0 4 8 0 1 4 7 8 101 chain 25761 chr3 198022430 + 109308406 109308754 THE1B 368 - 0 368 101037 128 0 2 39 4 6 135 1 16 9 0 1 32 chain 6440 chr3 198022430 + 109310328 109310416 THE1B 368 - 0 90 181712 65 1 3 22 chain 17574 chr3 198022430 + 109310461 109310700 THE1B 368 - 115 368 134067 51 2 0 8 0 2 19 2 1 114 1 16 42 chain 4555 chr3 198022430 + 109314253 109314312 MADE1 96 + 40 96 200166 5 3 0 51 chain 70039 chr3 198022430 + 109319438 109320407 L1PB 1623 - 457 1430 48377 335 0 13 81 1 0 153 6 1 98 1 0 31 10 5 39 8 7 131 4 3 65 0 5 6 chain 115398 chr3 198022430 + 109320794 109322639 L1PB1 5432 + 3604 5422 32643 118 6 10 230 6 5 71 0 35 22 5 6 129 3 0 147 4 3 86 1 0 19 4 8 11 86 15 86 0 4 17 3 0 184 1 0 39 9 12 77 1 29 22 0 3 33 0 1 68 21 23 17 2 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 1 0 43 1 0 16 23 12 18 34 29 15 1 0 21 1 0 13 6 5 13 chain 4898 chr3 198022430 + 109343057 109343170 MER2 342 + 14 135 196283 24 40 45 38 0 3 11 chain 26422 chr3 198022430 + 109357921 109358213 AluYc3 301 - 11 301 98330 178 2 0 112 chain 25598 chr3 198022430 + 109359985 109360318 LTR17 781 + 0 324 101737 153 4 3 56 8 0 112 chain 524248 chr3 198022430 + 109366438 109373218 L1PA7 6471 + 0 6461 4746 253 5 6 23 0 2 115 0 1 3 14 0 56 0 1 302 2 4 169 0 6 208 2 6 265 0 1 42 14 12 284 2 1 871 2 1 92 0 1 521 2 1 256 1 0 19 2 1 81 4 2 326 0 3 893 8 0 319 2 0 184 1 7 81 0 1 197 5 4 79 0 2 96 318 0 41 0 5 369 1 0 51 2 0 197 chain 511152 chr3 198022430 + 109383594 109389785 L1PA6 6164 + 0 6156 6053 371 0 8 11 14 13 97 11 10 47 3 4 62 0 1 57 0 1 2377 10 2 128 0 1 390 44 0 594 0 1 6 2 1 113 2 0 23 0 1 510 4 8 481 0 4 654 1 0 7 0 1 68 19 19 85 chain 20237 chr3 198022430 + 109403671 109404816 THE1D 372 + 0 372 126422 75 19 0 112 807 53 30 1 0 4 2 6 5 2 0 47 10 9 31 chain 21624 chr3 198022430 + 109406038 109406308 AluSp 311 + 0 268 121680 24 8 6 238 chain 28813 chr3 198022430 + 109408122 109408424 AluYa5 310 - 8 310 89829 302 chain 67489 chr3 198022430 + 109427774 109428667 L1PB1 5432 - 329 1276 49455 21 1 0 5 0 4 215 0 25 206 4 0 168 1 2 98 0 7 75 4 8 49 10 28 36 chain 147389 chr3 198022430 + 109429511 109431182 L1PA4 6152 + 4467 6140 24981 1224 0 2 447 chain 124686 chr3 198022430 + 109444804 109446247 L1PA6 6164 - 2 1442 29479 8 2 0 839 1 0 593 chain 17105 chr3 198022430 + 109459055 109459249 L1PA3long 6157 + 5963 6157 135298 194 chain 8468 chr3 198022430 + 109467315 109467429 MER2B 336 + 0 114 168473 68 0 1 28 1 0 17 chain 74584 chr3 198022430 + 109476081 109476889 L1PA3long 6157 - 0 809 46219 4 0 1 804 chain 26071 chr3 198022430 + 109477694 109477967 AluYa5 310 - 2 275 99748 273 chain 491386 chr3 198022430 + 109478676 109484132 L1PA3long 6157 + 1 6157 7304 66 0 550 165 0 128 525 0 1 1261 1 0 2076 0 22 1362 chain 22622 chr3 198022430 + 109484795 109485136 L1PA8 5853 - 0 338 117477 92 5 4 16 2 1 45 12 16 5 2 0 64 3 1 44 4 3 47 chain 450353 chr3 198022430 + 109493782 109499387 HERVL-int 5654 - 0 5654 8757 165 34 25 73 2 0 78 1 8 80 0 1 92 3 4 612 4 6 7 0 1 346 0 1 148 6 9 1573 0 5 104 11 40 388 2 0 548 8 9 172 0 1 121 0 1 166 0 5 26 6 12 101 0 1 4 2 1 553 1 0 139 1 0 28 chain 464275 chr3 198022430 + 109514066 109519753 L1PA7 6471 + 761 6465 8247 399 0 2 280 4 5 701 0 1 107 6 5 375 1 2 141 1 0 467 0 1 171 0 2 555 0 3 24 1 0 230 0 1 213 1 2 100 0 37 49 0 1 642 0 1 24 0 1 9 42 23 13 0 1 272 0 3 761 1 3 17 17 0 54 3 0 6 chain 6542 chr3 198022430 + 109540806 109540915 MER4C 627 - 30 142 180907 60 9 11 12 3 4 25 chain 41226 chr3 198022430 + 109541300 109541804 L1PA7 6471 - 1 503 67614 78 2 1 243 4 5 102 2 0 73 chain 2158 chr3 198022430 + 109541805 109541831 L1PA7 6471 + 5594 5620 237078 26 chain 27115 chr3 198022430 + 109541833 109542150 L1PA7 6471 + 5621 5941 95885 79 1 4 237 chain 7910 chr3 198022430 + 109562339 109562445 L1PB4 2604 + 2465 2570 171586 87 1 0 18 chain 114191 chr3 198022430 + 109601917 109603482 THE1B-int 1605 - 12 1605 33032 188 1 0 4 4 5 368 0 1 294 27 28 23 1 0 214 11 36 15 13 14 365 5 8 5 3 0 9 3 4 12 chain 131029 chr3 198022430 + 109611704 109613172 L1PA4 6152 - 9 1481 27853 835 0 4 633 chain 106788 chr3 198022430 + 109630500 109632102 L1PBa 3878 - 351 1954 35036 108 21 45 120 8 9 13 12 0 12 35 20 105 0 2 20 2 3 9 17 19 164 5 4 60 4 7 97 2 0 7 4 0 32 0 3 11 24 24 173 2 1 535 chain 45938 chr3 198022430 + 109632103 109632614 L1PA3long 6157 - 0 509 62094 9 2 0 500 chain 25698 chr3 198022430 + 109635079 109635421 THE1A 353 + 0 353 101295 26 0 1 53 3 2 6 0 1 20 2 1 96 0 9 78 0 2 58 chain 5677 chr3 198022430 + 109640708 109640790 MLT1B 390 - 21 105 188328 34 5 7 43 chain 142663 chr3 198022430 + 109659418 109661010 L1PA4 6152 + 4555 6152 25701 743 0 4 75 0 1 774 chain 15963 chr3 198022430 + 109684488 109684666 L1P1 4361 + 4056 4233 138476 95 1 0 82 chain 41038 chr3 198022430 + 109684914 109685366 L1PA4 6152 - 16 468 67844 452 chain 29852 chr3 198022430 + 109685366 109685689 L1PA4 6152 + 5353 5676 85269 323 chain 27924 chr3 198022430 + 109693465 109693790 LTR17 781 - 455 780 93263 325 chain 28137 chr3 198022430 + 109709197 109709505 L1PA2 6032 - 0 309 92514 98 0 1 210 chain 52371 chr3 198022430 + 109709815 109710644 L1PB1 5432 + 4626 5430 57381 50 0 5 123 0 4 295 1 0 11 1 0 14 8 7 11 1 0 11 5 1 9 2 0 53 18 16 44 1 0 16 1 0 4 19 8 18 6 4 16 2 0 27 1 0 18 1 0 13 1 0 16 2 0 10 chain 499307 chr3 198022430 + 109715316 109721347 L1PA6 6164 - 3 6164 6869 204 0 7 634 0 4 15 1 0 530 0 54 343 0 2 465 0 1 321 0 2 5 2 0 379 10 11 193 1 0 65 5 17 183 0 1 207 2 1 98 0 1 93 1 0 14 0 1 117 0 2 409 0 11 20 0 1 102 0 3 197 0 2 114 6 0 358 0 16 136 0 17 238 1 0 48 0 2 43 22 23 213 0 2 236 chain 371295 chr3 198022430 + 109728163 109732668 L1PA7 6471 + 1949 6470 11049 97 0 1 120 0 14 11 13 0 293 1 0 35 0 2 109 1 2 117 0 2 137 0 4 28 4 6 557 28 25 235 0 2 36 0 1 1042 1 0 197 0 1 108 0 5 485 1 0 849 chain 16853 chr3 198022430 + 109741661 109741886 MLT2A1 477 + 1 233 135970 47 0 2 90 2 3 26 1 5 59 chain 160248 chr3 198022430 + 109741891 109744291 L1PB1 5432 + 3029 5296 23302 361 1 2 33 1 2 129 1 0 5 13 14 52 1 2 92 47 16 74 0 1 225 13 12 340 7 8 88 7 34 22 29 30 55 3 0 458 0 1 18 132 11 20 1 0 13 16 11 9 2 0 52 4 3 15 1 0 44 1 0 15 chain 195185 chr3 198022430 + 109759112 109761939 L1PA11 4918 - 289 3044 19567 18 127 103 20 3 2 14 16 14 48 24 20 5 0 3 54 2 0 73 0 1 245 1 0 9 1 0 244 0 1 89 3 1 476 8 10 141 5 7 317 1 0 305 43 0 82 0 3 22 14 17 153 23 17 241 chain 28622 chr3 198022430 + 109764468 109764782 L1PA4 6152 + 5659 5973 90639 314 chain 27845 chr3 198022430 + 109787377 109787687 AluYa5 310 - 10 310 93542 14 10 0 286 chain 47745 chr3 198022430 + 109801859 109802383 L1PA3long 6157 - 0 524 60661 524 chain 31113 chr3 198022430 + 109805807 109806163 L1PA2 6032 + 5678 6027 82319 195 8 1 153 chain 260705 chr3 198022430 + 109836412 109839299 L1HS 6032 - 1 2800 15657 121 88 0 2093 0 1 580 1 0 4 chain 35580 chr3 198022430 + 109839299 109839677 L1HS 6032 + 2858 3236 75177 378 chain 37143 chr3 198022430 + 109844391 109844851 MER4A1 472 + 9 470 73319 50 0 1 410 chain 36988 chr3 198022430 + 109884539 109885021 MER4A1 472 - 0 472 73524 53 11 0 387 1 2 30 chain 9949 chr3 198022430 + 109900923 109901050 MER85 139 - 0 137 160837 40 0 10 87 chain 202956 chr3 198022430 + 109920502 109922818 L1PA5 6144 - 14 2332 18999 518 2 1 492 1 0 288 0 1 486 0 4 398 1 0 130 chain 91366 chr3 198022430 + 109922818 109923864 L1PA5 6144 + 2767 3815 39115 178 0 2 229 1 0 192 1 2 445 chain 21663 chr3 198022430 + 109924566 109924814 AluSc 308 + 5 253 121527 248 chain 3934 chr3 198022430 + 109963381 109963497 L1MC1 2226 - 77 169 208350 19 19 9 17 8 6 15 5 0 20 7 0 6 chain 98931 chr3 198022430 + 109974691 109975830 L1PA5 6144 - 5 1152 37042 156 0 1 409 0 7 574 chain 102458 chr3 198022430 + 110066409 110067530 L1PA3long 6157 - 0 1120 36144 869 1 0 251 chain 29154 chr3 198022430 + 110074349 110074654 AluYk12 309 - 4 309 88291 305 chain 143514 chr3 198022430 + 110076972 110079043 L1PA7 6471 + 4420 6469 25559 143 9 8 7 0 1 99 0 2 53 0 1 251 1 0 112 22 0 114 3 2 140 0 1 59 252 256 14 8 5 767 3 0 14 chain 22587 chr3 198022430 + 110077985 110078237 AluY 311 + 28 280 117646 252 chain 4045 chr3 198022430 + 110143074 110143379 MLT1B 390 + 77 382 206724 40 169 167 10 7 0 8 37 47 26 1 0 7 chain 552842 chr3 198022430 + 110158933 110164960 L1PA2 6032 + 1 6029 1086 1111 0 1 4916 chain 512991 chr3 198022430 + 110213561 110220325 L1PA7 6471 + 3 6438 5880 386 8 0 13 1 2 432 0 1 134 8 2 112 2 1 293 2 1 359 0 1 108 1 2 313 0 1 37 1 2 97 3 2 335 1 3 214 2 1 641 0 1 6 3 0 285 0 1 468 0 1 62 1 3 234 17 12 103 0 4 111 0 1 167 6 4 26 1 0 391 11 4 241 1 0 213 308 0 468 23 21 115 chain 362450 chr3 198022430 + 110225678 110230915 L1PB1 5432 - 19 5353 11305 9 1 0 12 1 0 22 1 0 24 2 0 14 8 5 18 27 15 13 1 0 44 1 0 16 2 1 32 31 41 13 10 9 11 13 11 87 11 7 25 0 2 7 1 2 158 4 3 191 3 0 192 0 8 174 4 1 62 0 1 184 7 8 48 0 4 212 13 12 84 5 24 285 1 0 126 0 2 180 1 2 178 8 7 7 1 0 67 0 4 163 0 2 52 6 4 33 2 1 174 0 11 439 17 33 216 12 76 70 88 65 8 2 0 9 1 0 216 0 1 90 35 27 192 13 16 28 0 20 45 0 2 113 15 16 14 6 7 348 0 1 8 1 2 141 8 7 20 chain 25340 chr3 198022430 + 110244487 110244857 THE1B 368 + 0 368 103022 13 2 0 26 1 6 127 3 1 23 15 13 85 1 0 74 chain 39224 chr3 198022430 + 110286217 110286679 LTR2 463 + 0 463 70421 360 14 15 88 chain 18547 chr3 198022430 + 110292274 110292491 L1PA7 6471 + 6028 6245 131364 217 chain 16806 chr3 198022430 + 110292518 110292725 L1PA7 6471 + 6251 6459 136100 133 0 1 74 chain 45926 chr3 198022430 + 110347833 110348390 MER41A 554 - 0 554 62109 146 4 0 114 0 1 293 chain 541913 chr3 198022430 + 110350866 110356889 L1PA3long 6157 - 1 6150 2524 1005 0 6 354 15 1 845 0 1 681 0 1 517 0 1 202 7 8 368 0 1 1261 0 128 611 12 13 145 chain 4111 chr3 198022430 + 110359088 110359131 tRNA-Gln-CAG 43 + 0 43 205766 43 chain 22579 chr3 198022430 + 110381706 110382067 THE1D 372 + 6 372 117678 154 31 34 16 13 14 114 8 9 25 chain 47868 chr3 198022430 + 110386758 110387388 L1PBa 3878 + 2215 2869 60580 481 5 12 6 0 3 28 0 15 104 1 0 5 chain 11653 chr3 198022430 + 110402948 110403114 LTR7B 505 + 268 436 153681 16 5 7 116 0 1 4 1 0 24 chain 12207 chr3 198022430 + 110421803 110422062 L1MA3 4352 - 1895 2156 151387 32 74 79 15 1 0 18 1 0 12 1 0 105 chain 5245 chr3 198022430 + 110455820 110455883 Tigger1 2417 - 1884 1948 192580 44 0 1 19 chain 27079 chr3 198022430 + 110460145 110460429 AluYa8 305 - 3 287 96006 284 chain 58007 chr3 198022430 + 110482723 110483587 L1PB2 3958 + 2987 3838 53969 290 0 1 29 2 0 26 8 9 14 6 5 11 1 0 67 2 0 12 4 0 94 1 0 38 5 6 29 1 0 63 1 0 51 32 30 12 6 5 59 chain 83529 chr3 198022430 + 110487700 110488790 L1P2 5180 + 2 1111 42105 147 1 0 98 1 0 261 11 9 218 0 1 4 2 1 46 1 0 6 2 1 139 0 25 153 chain 28032 chr3 198022430 + 110538218 110538516 AluYa5 310 + 10 308 92883 298 chain 438151 chr3 198022430 + 110549738 110555262 L1PA7 6471 - 27 5582 9102 39 0 1 29 4 0 6 17 18 28 0 7 3 6 0 109 0 1 192 0 4 353 0 1 29 0 3 15 0 4 242 4 13 398 2 0 290 8 0 173 0 1 272 0 1 105 0 1 516 2 0 13 6 7 73 2 1 288 0 1 296 1 2 268 0 2 62 0 2 54 1 3 198 0 1 44 3 0 108 3 5 76 3 4 186 0 1 134 0 1 396 9 11 79 7 6 281 1 8 90 chain 4590 chr3 198022430 + 110556903 110556963 L1MA9 1812 - 1276 1338 199740 41 0 2 19 chain 48918 chr3 198022430 + 110561756 110562353 L1PA7 6471 - 2257 2852 59798 378 3 0 8 0 1 208 chain 8847 chr3 198022430 + 110562354 110562461 L1PA7 6471 - 2852 2959 165528 107 chain 183040 chr3 198022430 + 110562461 110564690 L1PA7 6471 + 4222 6458 20680 90 1 2 107 2 1 244 0 8 517 0 1 163 12 0 253 6 8 134 0 1 58 0 3 373 0 3 244 0 1 25 chain 21224 chr3 198022430 + 110579164 110579433 Tigger2a 444 - 109 378 123125 81 1 0 179 0 1 8 chain 24717 chr3 198022430 + 110594640 110594998 THE1B 368 + 0 368 106346 114 0 1 5 2 1 48 1 0 29 35 45 62 0 1 62 chain 19676 chr3 198022430 + 110595584 110595818 L1PA7 6471 - 12 246 128178 234 chain 20341 chr3 198022430 + 110599530 110599887 THE1A 353 + 1 353 126100 12 2 0 34 7 8 23 17 16 17 0 2 6 17 15 54 12 10 81 1 0 74 chain 155097 chr3 198022430 + 110607661 110609395 L1HS 6032 + 2 1728 23967 72 0 1 181 1 0 455 7 0 883 1 0 134 chain 56428 chr3 198022430 + 110617028 110617792 L1PA8 5853 - 0 759 54892 93 1 0 19 2 1 32 32 30 70 2 0 43 2 1 334 6 7 45 9 10 74 chain 35993 chr3 198022430 + 110617792 110618235 L1PA8 5853 + 4638 5084 74572 367 5 4 44 0 4 27 chain 505001 chr3 198022430 + 110630657 110636306 L1PA3long 6157 - 370 6157 6536 473 0 4 3593 0 1 812 0 128 34 0 1 11 4 3 562 12 13 80 0 4 68 chain 115551 chr3 198022430 + 110667354 110668860 THE1B-int 1605 - 0 1588 32592 584 8 10 54 8 24 214 0 1 81 8 7 171 1 0 4 0 65 373 chain 18488 chr3 198022430 + 110671277 110671588 THE1B 368 - 0 368 131538 56 11 10 59 46 56 65 0 33 30 0 15 44 chain 36465 chr3 198022430 + 110688616 110689136 LTR10C 591 - 62 580 74283 11 5 8 19 30 29 4 1 0 161 1 0 264 2 0 22 chain 29666 chr3 198022430 + 110703831 110704249 LTR3B 427 + 0 423 85975 177 6 0 61 6 7 55 0 3 26 0 6 24 13 14 50 chain 513270 chr3 198022430 + 110717152 110723595 L1PA7 6471 + 3 6469 5856 269 37 31 45 1 0 47 24 7 10 0 3 260 35 55 624 2 1 592 1 0 480 0 1 63 1 0 29 0 2 118 0 1 183 5 7 175 0 1 226 0 4 286 1 0 102 0 7 548 0 2 78 0 1 89 0 3 594 1 2 339 0 7 44 8 0 148 0 1 126 0 3 685 8 9 98 0 1 49 2 0 10 chain 108075 chr3 198022430 + 110736279 110737557 L1PA5 6144 + 4893 6137 34695 404 0 4 414 0 2 131 40 0 289 chain 556275 chr3 198022430 + 110737563 110743592 L1PA2 6032 + 1 6029 692 3060 6 5 2963 chain 10113 chr3 198022430 + 110745155 110745371 Tigger4a 237 - 7 213 160030 23 24 25 33 5 10 70 1 0 5 1 0 5 0 1 12 21 6 16 chain 509156 chr3 198022430 + 110775210 110781646 L1PA7 6471 + 3 6430 6232 191 3 4 74 7 6 54 6 7 663 6 5 381 5 0 7 0 5 406 1 0 229 1 0 598 1 0 229 0 1 225 8 12 384 1 2 11 4 0 175 1 0 510 0 2 74 1 2 176 12 13 219 0 4 947 8 9 336 10 10 428 7 0 12 14 5 11 chain 4489 chr3 198022430 + 110784929 110784991 L1MA4 2864 - 55 115 200912 42 2 0 18 chain 19626 chr3 198022430 + 110786435 110786723 THE1B 368 + 0 307 128319 169 1 0 17 26 44 28 1 3 46 chain 117963 chr3 198022430 + 110814784 110816343 THE1B-int 1605 + 0 1597 31818 184 0 3 245 24 49 165 4 0 35 0 1 48 0 1 430 0 3 110 10 0 34 11 30 259 chain 24056 chr3 198022430 + 110816351 110816710 THE1B 368 + 0 356 110015 39 1 16 117 1 0 26 1 3 31 0 2 57 3 0 14 14 0 3 4 0 48 chain 3289 chr3 198022430 + 110820561 110820600 MER3 215 + 153 193 219185 6 0 1 33 chain 10675 chr3 198022430 + 110905045 110905308 L1PREC2 3366 + 2712 2951 157505 38 4 2 52 2 0 13 5 4 28 1 0 5 3 0 11 49 39 5 2 0 12 13 10 20 chain 28596 chr3 198022430 + 110933580 110933953 THE1C 375 + 0 375 90751 89 0 1 35 13 14 236 chain 176520 chr3 198022430 + 110958295 110960498 L1PA4 6152 - 0 2004 21301 13 3 5 95 0 1 20 5 0 656 198 0 1154 0 1 59 chain 14793 chr3 198022430 + 110959120 110959285 L1PA3long 6157 - 0 164 141954 155 1 0 9 chain 180360 chr3 198022430 + 111007057 111009846 L1PB1 5432 - 9 4657 20958 5 1 0 14 1 0 12 1 0 46 59 44 21 1 0 45 1 0 15 2 1 27 16 6 19 2 0 9 5 1 14 1 0 10 1 0 20 111 36 187 0 6 87 3 1 92 0 2 70 8 5 47 7 8 61 0 4 77 19 20 239 6 7 183 7 0 16 0 1958 293 0 2 310 64 70 219 1 4 145 0 1 4 1 0 139 1 2 44 chain 4185 chr3 198022430 + 111029886 111030166 MLT1J2-int 891 - 353 627 204775 22 169 165 20 37 35 32 chain 57457 chr3 198022430 + 111038073 111038991 L1PA15 4387 + 3443 4351 54263 365 1 0 4 1 0 18 29 10 49 2 0 44 1 0 67 0 1 16 2 30 57 1 0 68 0 1 4 1 0 7 2 1 16 10 6 10 1 0 45 17 14 17 0 2 19 25 18 19 chain 20888 chr3 198022430 + 111056326 111056565 AluY 311 + 62 300 124326 69 1 0 169 chain 200288 chr3 198022430 + 111095225 111098227 L1PB1 5432 + 2511 5430 19185 322 16 16 210 0 2 261 1 0 4 3 4 303 70 11 19 8 9 54 4 6 495 0 1 398 3 0 18 0 1 60 0 2 81 0 1 100 0 1 87 77 87 39 11 4 7 1 0 20 1 0 13 1 0 11 15 9 53 2 1 16 2 1 42 1 0 15 78 60 15 1 0 21 15 13 15 2 0 11 chain 432132 chr3 198022430 + 111098713 111104218 L1PA8 5853 + 50 5853 9264 21 2 0 11 1 0 13 49 13 36 0 1 156 22 10 514 0 320 364 5 6 166 0 1 224 0 2 109 0 1 8 11 4 73 0 1 467 0 1 255 16 17 85 0 4 24 0 12 567 0 7 364 0 2 174 1 2 319 1 0 103 0 1 59 0 1 12 0 4 140 0 1 285 6 4 260 0 4 284 1 0 46 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 75195 chr3 198022430 + 111106866 111107681 L1PA3long 6157 - 1942 2757 45785 815 chain 174153 chr3 198022430 + 111107681 111109611 L1PA3long 6157 + 4226 6157 21578 565 0 1 1365 chain 4601 chr3 198022430 + 111134012 111134068 MER5A 189 - 78 134 199606 56 chain 6535 chr3 198022430 + 111148537 111148640 MSTA 426 + 282 383 180955 28 1 0 33 13 12 28 chain 22464 chr3 198022430 + 111149010 111149281 THE1C-int 1605 - 12 283 118174 271 chain 4334 chr3 198022430 + 111149281 111149389 L1PA13 3608 - 3036 3138 202791 30 9 8 18 23 19 16 1 0 11 chain 513319 chr3 198022430 + 111160002 111166419 L1PA7 6471 - 14 6469 5850 138 1 0 4 15 18 363 0 1 34 0 1 277 1 0 212 14 4 60 1 0 58 1 0 88 0 4 106 3 0 89 4 9 41 9 10 419 0 2 470 9 10 35 0 2 75 7 8 79 6 7 239 0 1 69 0 1 82 0 3 107 0 33 575 0 1 85 6 0 116 0 2 440 0 1 5 2 1 220 0 2 250 0 3 982 0 1 202 7 0 137 2 0 127 0 1 145 chain 28281 chr3 198022430 + 111174538 111175015 LTR12E 1234 + 616 1221 92001 85 82 83 44 0 1 80 2 3 111 1 0 34 0 126 38 chain 282191 chr3 198022430 + 111188191 111192287 L1PA10 4194 - 51 4078 14524 27 3 0 52 0 1 111 3 1 506 0 1 41 0 3 329 9 14 101 1 0 167 6 10 129 4 7 84 2 1 327 0 4 208 18 22 138 0 2 35 0 1 57 1 0 116 0 2 96 2 5 88 0 2 80 1 0 4 27 6 14 5 3 13 9 4 29 0 1 70 1 0 200 1 2 158 4 8 94 6 7 215 0 2 37 1 5 19 3 1 80 2 1 7 4 0 10 2 0 5 1 0 10 1 0 7 1 0 7 1 0 18 3 1 31 63 35 21 1 0 4 37 30 9 2 0 6 3 0 15 2 0 11 59 40 8 2 0 11 chain 44794 chr3 198022430 + 111198590 111199146 MER41A 554 - 0 554 63301 245 1 0 136 1 0 173 chain 39836 chr3 198022430 + 111205590 111206070 L1PA8A 6298 + 5716 6291 69565 84 0 96 281 4 3 111 chain 235905 chr3 198022430 + 111209002 111211592 L1PA3long 6157 + 3574 6157 16981 112 0 1 644 10 0 15 0 1 582 0 1 1227 chain 22038 chr3 198022430 + 111220186 111220444 AluY 311 + 52 306 120075 81 3 0 136 2 1 36 chain 71683 chr3 198022430 + 111242998 111244006 MER11A 1151 + 7 1151 47610 71 8 16 14 0 2 31 9 98 55 4 0 146 0 1 93 12 13 135 6 9 52 0 4 61 2 1 12 5 38 292 chain 87619 chr3 198022430 + 111245703 111247107 HERVK11-int 2540 + 911 2238 40527 57 25 17 16 78 61 4 1 0 63 1 0 48 4 3 9 8 5 15 28 17 27 12 1 35 21 1 85 4 5 347 8 3 105 1 0 77 4 5 107 4 3 77 5 6 128 chain 79874 chr3 198022430 + 111248297 111249311 MER11A 1151 + 1 1151 43651 54 0 99 140 4 0 149 0 1 93 0 1 144 6 9 52 0 4 61 2 1 12 5 38 292 chain 18581 chr3 198022430 + 111270635 111271042 L1PA11 4918 - 270 635 131284 10 5 0 27 47 33 11 3 1 12 1 0 15 13 9 8 2 0 5 3 0 9 4 0 20 1 0 16 2 0 78 2 1 56 8 6 30 1 0 18 chain 559768 chr3 198022430 + 111275050 111281081 L1PA2 6032 - 0 6031 368 6031 chain 3585 chr3 198022430 + 111285763 111285835 L1MC1 2226 + 2129 2198 213894 6 1 0 14 10 9 27 1 0 13 chain 24099 chr3 198022430 + 111301411 111301736 THE1A 353 - 0 351 109746 155 1 0 7 0 1 57 0 9 14 2 1 34 0 18 55 chain 122650 chr3 198022430 + 111301756 111303317 THE1A-int 1579 - 17 1578 30179 93 0 1 557 0 1 126 30 28 755 chain 10198 chr3 198022430 + 111307509 111307640 THE1B 368 - 202 368 159627 83 0 29 6 0 6 42 chain 325661 chr3 198022430 + 111346822 111351463 L1PA11 4918 + 6 4629 12360 36 2 0 33 7 4 15 48 18 13 5 3 45 6 5 23 21 18 235 28 31 77 2 5 27 0 10 43 0 1 102 1 0 44 1 0 77 6 8 50 3 4 4 1 0 471 4 1 84 0 1 117 7 8 92 2 0 102 2 1 154 0 3 116 0 1 158 1 0 37 0 1 20 0 4 662 0 8 125 11 16 94 4 3 70 0 1 135 6 5 56 0 3 43 0 4 127 6 0 13 0 19 350 0 7 56 0 1 222 5 0 78 1 0 69 2 0 11 83 68 13 1 0 14 6 0 4 1 0 8 1 0 5 19 13 18 chain 186517 chr3 198022430 + 111361698 111364329 L1PB1 5432 + 2842 5395 20378 77 0 1 149 12 1 159 19 20 33 0 2 258 0 2 189 7 0 16 0 1 299 0 1 62 0 1 28 0 15 135 0 7 57 0 2 107 63 8 149 0 1 10 8 4 168 5 11 288 5 0 10 7 0 21 1 0 13 15 11 9 2 0 53 2 1 16 1 0 5 1 0 38 1 0 16 23 12 19 33 28 15 1 0 21 1 0 4 chain 3152 chr3 198022430 + 111399643 111399682 MIR 256 + 93 132 221889 39 chain 3665 chr3 198022430 + 111408894 111408940 MIR 256 - 114 160 212468 46 chain 43854 chr3 198022430 + 111461164 111461652 L1PA5 6144 - 5 493 64381 488 chain 14498 chr3 198022430 + 111470539 111470696 L1PA4 6152 + 5995 6152 142895 157 chain 550149 chr3 198022430 + 111471497 111477596 L1PA3long 6157 - 0 6152 1430 3413 2 0 350 0 4 31 0 2 956 7 83 388 30 2 775 0 1 147 chain 2988 chr3 198022430 + 111513865 111513902 tRNA-Cys-TGY 72 + 0 37 225301 37 chain 24914 chr3 198022430 + 111517729 111518091 THE1C 375 - 13 375 105250 13 1 0 150 23 20 19 14 18 142 chain 4038 chr3 198022430 + 111520004 111520066 MER45A 178 - 21 84 206810 22 5 6 35 chain 24706 chr3 198022430 + 111532964 111533333 MLT2A1 477 + 0 383 106403 21 0 12 75 7 10 50 5 2 11 0 1 5 4 3 13 12 14 166 chain 64371 chr3 198022430 + 111576530 111577316 L1PA8 5853 + 5073 5853 50854 489 1 0 46 2 0 10 0 1 57 14 12 55 1 0 17 1 0 93 chain 235051 chr3 198022430 + 111595432 111598190 L1PA7 6471 - 14 2793 17025 327 0 1 426 1 0 79 0 3 81 0 1 428 0 15 582 0 1 743 7 8 84 chain 5604 chr3 198022430 + 111598196 111598262 U3 216 - 150 216 189042 66 chain 78861 chr3 198022430 + 111612725 111613655 L1PA2 6032 - 0 902 44121 8 31 0 762 5 4 72 0 4 52 chain 31231 chr3 198022430 + 111654292 111654783 MLT2A1 477 - 0 469 82107 46 52 44 194 18 0 24 5 2 78 0 3 67 0 4 7 chain 3381 chr3 198022430 + 111714638 111714967 MER63B 433 - 48 387 217458 23 158 162 30 99 105 19 chain 6150 chr3 198022430 + 111726116 111726324 L1MC1 2226 - 42 234 183979 16 0 1 15 1 0 11 54 47 11 5 0 6 34 30 55 chain 3040 chr3 198022430 + 111754874 111754909 MER11B 1079 - 746 781 224206 35 chain 70636 chr3 198022430 + 111755592 111756675 MER11B 1079 + 0 1074 48092 423 7 15 19 18 17 22 61 50 15 0 1 156 1 0 23 13 3 13 40 44 24 0 1 53 0 1 169 2 1 24 chain 91241 chr3 198022430 + 111778808 111779868 MER11C 1089 - 30 1089 39217 387 1 0 420 0 1 110 1 0 141 chain 498889 chr3 198022430 + 111785680 111791629 L1PA6 6164 - 3 5841 6907 5 3 0 14 0 1 1190 0 6 288 0 1 353 0 2 542 3 1 407 1 2 158 3 1 386 2 0 79 0 1 160 0 1 229 0 1 117 117 0 1004 0 1 76 0 1 567 1 0 244 chain 8982 chr3 198022430 + 111789632 111789737 L1PA5 6144 - 6 111 165703 105 chain 535833 chr3 198022430 + 111879124 111885226 L1PA3long 6157 - 5 6120 3471 151 0 1 1364 0 1 3025 0 1 533 1 3 359 0 7 132 0 1 537 chain 192281 chr3 198022430 + 111907083 111909306 L1PA6 6164 - 2 2224 19841 6 4 0 559 2 4 224 0 5 540 3 0 783 2 1 100 chain 170327 chr3 198022430 + 111923846 111925843 L1PA6 6164 + 4100 6156 22009 625 0 50 272 0 1 264 0 4 176 0 4 92 0 2 433 1 0 6 1 0 127 chain 534525 chr3 198022430 + 111930075 111936206 L1PA5 6144 + 0 6142 3648 163 0 1 2344 1 0 694 1 0 202 0 1 523 0 1 420 0 4 1114 0 2 521 7 0 6 1 8 81 0 4 53 chain 531255 chr3 198022430 + 111952330 111958440 L1PA5 6144 - 0 6141 4049 147 2 3 496 1 0 203 0 5 498 0 1 343 0 3 483 0 6 797 1 2 379 8 12 459 0 1 54 0 8 1817 0 1 55 0 1 367 chain 43119 chr3 198022430 + 111961692 111962323 L1PA16 3655 + 2920 3566 65271 205 6 8 10 8 1 56 1 0 18 21 30 43 2 0 205 1 0 4 8 23 43 chain 59822 chr3 198022430 + 111968772 111969428 L1PA4 6152 - 11 668 52919 137 0 1 519 chain 3713 chr3 198022430 + 112015747 112015789 MADE1 96 - 54 96 211740 42 chain 14825 chr3 198022430 + 112041985 112042363 L1MA5A 2387 - 85 436 141862 7 1 0 35 114 89 16 2 0 24 0 1 23 6 5 33 15 14 6 1 0 16 1 0 13 0 4 65 chain 19034 chr3 198022430 + 112076575 112076811 MER6A 605 - 20 257 130018 139 0 1 97 chain 23864 chr3 198022430 + 112101118 112101473 THE1A 353 + 0 353 111110 15 2 0 32 0 1 38 9 8 8 1 0 5 17 18 113 0 1 39 1 0 75 chain 14661 chr3 198022430 + 112114068 112114252 MER41C 542 - 352 536 142384 184 chain 34341 chr3 198022430 + 112115517 112115958 MER4A1 472 + 0 451 77140 59 0 1 67 1 9 115 11 12 188 chain 35742 chr3 198022430 + 112118597 112119045 LTR7 482 + 0 482 75208 225 0 1 35 0 31 127 12 14 49 chain 10685 chr3 198022430 + 112119048 112119185 MER4A1 472 - 333 472 157474 106 1 0 11 0 1 5 0 2 14 chain 177644 chr3 198022430 + 112119193 112122402 MER4-int 2692 - 0 2515 21197 11 1 0 68 434 27 299 2 1 154 7 5 113 0 1 94 332 2 25 0 2 108 1 0 20 1 2 15 0 1 33 8 16 150 1 0 33 13 8 20 5 1 6 0 5 9 0 1 133 2 0 204 1 2 25 0 5 229 1 0 71 1 14 54 1 0 70 0 1 22 0 1 131 0 2 5 3 20 50 0 1 128 0 1 59 5 6 51 chain 29471 chr3 198022430 + 112119273 112119707 LTR7Y 441 - 0 441 86747 92 0 1 104 69 84 57 9 0 103 chain 13751 chr3 198022430 + 112120392 112120672 LTR7 482 - 9 423 145432 40 27 78 25 2 0 21 1 2 12 10 44 28 2 3 19 1 0 37 6 56 49 chain 35452 chr3 198022430 + 112125955 112126432 LTR2B 499 - 0 499 75618 180 1 0 10 5 10 170 0 19 36 3 0 56 2 4 14 chain 9151 chr3 198022430 + 112135077 112135204 L1MA2 4263 - 225 350 164804 77 4 2 46 chain 6446 chr3 198022430 + 112135780 112135933 MER21A 919 - 730 890 181670 12 12 0 12 14 13 28 8 27 11 4 5 52 chain 40189 chr3 198022430 + 112137258 112137709 LTR7 482 - 0 482 69045 203 1 32 247 chain 301653 chr3 198022430 + 112138099 112141758 HERVH-int 3825 - 0 3825 13335 141 0 2 344 8 218 746 0 1 649 2 0 8 4 31 83 1 5 54 0 1 319 15 0 444 0 1 48 2 1 11 69 7 12 2 1 42 12 11 14 3 0 9 6 18 24 2 1 9 1 0 38 5 0 532 chain 40895 chr3 198022430 + 112141760 112142212 LTR7 482 - 0 482 68034 186 0 31 15 1 0 250 chain 21116 chr3 198022430 + 112149682 112150022 THE1B 368 + 0 367 123509 44 13 28 97 1 0 99 47 60 39 chain 3753 chr3 198022430 + 112166955 112166996 MLT2D 439 - 0 41 211092 41 chain 25861 chr3 198022430 + 112168821 112169159 THE1A 353 - 14 353 100604 148 0 1 43 12 13 24 4 3 107 chain 15544 chr3 198022430 + 112181853 112182228 L1MC1 2226 + 1762 2127 139748 82 9 10 33 7 1 27 1 0 64 26 21 15 10 22 9 1 0 4 29 27 6 5 0 20 9 7 12 1 0 5 chain 27952 chr3 198022430 + 112198826 112199246 LTR7B 505 + 0 495 93159 108 0 10 66 35 11 17 0 88 65 1 0 67 0 3 6 14 13 41 chain 77086 chr3 198022430 + 112212118 112213711 L1PA8A 6298 + 5270 6290 44922 42 0 31 141 1 0 45 623 17 234 0 3 343 0 1 143 5 4 16 chain 6780 chr3 198022430 + 112225516 112225632 MER20 218 + 99 218 179110 54 7 8 33 10 12 12 chain 93988 chr3 198022430 + 112229408 112230628 MER4-int 2692 - 1463 2690 38352 432 0 13 66 10 6 53 1 2 531 0 1 4 23 22 63 2 0 25 1 0 9 chain 13061 chr3 198022430 + 112231843 112232028 LTR8 732 + 0 195 147988 15 0 1 13 12 21 145 chain 18589 chr3 198022430 + 112237842 112238202 THE1B 368 + 0 368 131262 12 0 4 51 0 1 39 9 10 51 4 5 11 66 68 54 7 6 56 chain 30130 chr3 198022430 + 112273046 112273473 LTR7B 505 + 0 505 84383 108 0 10 56 0 38 13 3 27 28 0 2 83 2 1 34 0 6 35 14 13 51 chain 67549 chr3 198022430 + 112275111 112275882 SVA_D 2077 + 1240 2076 49419 76 24 85 575 0 4 96 chain 77536 chr3 198022430 + 112282926 112283856 LTR5_Hs 974 - 0 974 44720 78 1 3 23 2 0 36 9 15 703 1 35 69 0 4 8 chain 30165 chr3 198022430 + 112290770 112291088 AluYb8 318 - 0 318 84290 318 chain 3945 chr3 198022430 + 112312059 112312107 L1M4c 1769 - 1219 1267 208200 48 chain 45673 chr3 198022430 + 112334383 112334937 MER41A 554 + 0 554 62336 554 chain 6745 chr3 198022430 + 112364465 112364566 MER41E 591 - 488 591 179360 21 6 8 74 chain 502860 chr3 198022430 + 112378406 112384011 L1PA3long 6157 - 410 6157 6678 1737 5 7 991 1 0 433 0 4 795 0 8 866 1 129 618 5 6 153 chain 4669 chr3 198022430 + 112384015 112384096 L1P4 1494 - 1337 1414 198876 10 0 2 20 2 1 32 3 0 4 2 0 8 chain 369061 chr3 198022430 + 112412541 112424743 L1PB1 5432 + 19 5424 11121 123 9 16 7 7 0 83 1 3 153 1 0 39 6880 141 17 2 1 547 0 7 15 2 0 231 2 0 4 15 0 103 0 6 34 0 4 16 4 6 35 0 1 120 7 6 184 1 2 564 17 8 219 8 7 95 1 0 9 0 1 16 5 0 121 0 1 323 28 27 52 1 2 5 1 0 11 0 1 4 2 1 132 10 8 147 3 4 45 44 18 191 7 8 160 0 5 94 1 4 241 1 0 28 0 4 142 0 1 182 3 11 168 0 1 119 12 5 6 1 0 24 1 0 9 1 0 4 0 1 4 17 11 53 2 1 12 9 8 38 8 7 10 4 1 11 10 1 18 3 1 4 1 0 14 2 0 24 1 0 17 7 6 11 1 0 16 1 0 4 chain 340233 chr3 198022430 + 112412964 112419496 HERVL-int 5654 + 1395 5654 11894 424 1 2 10 6 7 67 0 2 30 0 1 382 2 0 359 2336 23 363 6 5 180 0 1 48 0 2 665 0 2 527 7 19 59 0 1 16 1 5 307 0 3 27 0 8 161 9 11 112 5 6 145 0 2 277 chain 17843 chr3 198022430 + 112419496 112419754 MLT2A1 477 + 0 263 133267 131 19 20 17 1 5 90 chain 19897 chr3 198022430 + 112424765 112425012 L1PA13 3608 - 611 858 127495 247 chain 558807 chr3 198022430 + 112442972 112449114 L1PA3long 6157 + 6 6157 426 244 8 10 780 1 0 2148 0 1 77 0 2 96 1 0 582 0 1 695 0 5 1510 chain 22992 chr3 198022430 + 112454157 112454445 AluSc 308 + 8 295 115658 270 2 1 16 chain 29169 chr3 198022430 + 112467405 112467712 AluYk11 308 - 1 308 88208 307 chain 27535 chr3 198022430 + 112470935 112471335 LTR22A 463 + 0 420 94556 44 13 21 28 1 2 126 16 26 44 0 1 128 chain 27971 chr3 198022430 + 112475105 112475479 THE1C 375 + 0 375 93108 64 14 15 296 chain 35776 chr3 198022430 + 112502884 112503340 LTR7B 505 - 15 493 75168 173 6 3 62 7 27 161 0 2 29 0 3 18 chain 56324 chr3 198022430 + 112509286 112510343 LTR17 781 - 27 781 54952 32 4 26 243 6 5 121 1 0 33 0 2 215 325 0 77 chain 58073 chr3 198022430 + 112561079 112561868 MER11A 1151 + 0 885 53938 65 0 99 66 0 4 60 4 0 121 4 0 28 0 1 94 0 1 77 0 2 5 3 16 45 5 6 145 25 8 42 chain 24818 chr3 198022430 + 112579077 112579369 AluSp 311 + 4 296 105781 292 chain 29137 chr3 198022430 + 112588154 112588461 AluYa5 310 - 3 310 88379 307 chain 66098 chr3 198022430 + 112595532 112596346 L1PA7 6471 - 914 1719 50055 390 0 1 10 18 6 62 0 1 145 4 5 185 chain 75709 chr3 198022430 + 112596359 112597258 L1PA7 6471 + 5572 6470 45645 49 1 0 33 0 1 94 1 2 42 0 2 422 1 0 81 4 1 171 chain 31418 chr3 198022430 + 112604333 112604808 MER9a3 513 + 0 513 81784 18 0 2 91 0 1 67 10 11 15 0 1 50 11 28 10 3 17 97 24 26 79 chain 13837 chr3 198022430 + 112607953 112608274 L1PB1 5432 - 13 302 145105 18 1 0 10 1 0 18 1 0 23 8 6 12 8 5 19 29 16 12 1 0 43 2 1 14 5 4 51 27 20 13 1 0 4 chain 38228 chr3 198022430 + 112608274 112608813 L1PBa1 4058 - 3515 4048 71804 111 3 1 90 5 4 5 0 1 124 0 4 95 8 4 48 1 0 6 6 4 12 2 1 23 chain 70840 chr3 198022430 + 112622835 112623726 L1PA10 4194 - 48 950 47997 29 3 0 49 0 1 55 1 0 97 0 10 26 0 1 362 0 3 269 chain 6329 chr3 198022430 + 112624460 112624538 L1PB1 5432 + 4899 4977 182546 78 chain 375855 chr3 198022430 + 112630447 112634658 L1PA4 6152 + 1939 6151 10891 63 0 1 317 1 0 2106 0 1 1263 1 2 206 2 1 252 chain 298858 chr3 198022430 + 112635407 112639344 L1PA7 6471 + 1899 6451 13486 87 8 1 339 5 6 30 0 903 81 1 0 47 1 2 116 307 0 36 0 24 27 11 8 325 6 5 71 1 2 38 2 1 33 3 0 477 1 0 397 1 0 394 0 1 275 0 4 164 0 2 342 0 3 311 chain 11755 chr3 198022430 + 112639344 112639471 L1PA2 6032 + 5905 6032 152834 127 chain 110030 chr3 198022430 + 112655246 112657162 L1PA11 4918 - 355 1861 34208 9 1 0 15 13 9 10 27 18 14 2 1 15 2 0 65 2 0 12 3 2 35 1 0 5 1 2 26 8 7 185 15 7 131 382 0 567 0 1 370 chain 27690 chr3 198022430 + 112655861 112656225 THE1C 375 - 13 375 94077 13 1 0 231 11 10 108 chain 24962 chr3 198022430 + 112664602 112664899 AluY 311 + 8 302 104994 123 0 2 42 6 1 126 chain 36993 chr3 198022430 + 112671223 112671643 L1PA3long 6157 + 5737 6157 73520 420 chain 127429 chr3 198022430 + 112682074 112683646 THE1B-int 1605 + 0 1600 28705 67 0 3 362 0 25 52 1 0 876 0 1 214 chain 18755 chr3 198022430 + 112683651 112683969 THE1B 368 + 0 356 130815 39 1 16 22 0 14 81 2 1 25 60 70 88 chain 26265 chr3 198022430 + 112708409 112708812 LTR7B 505 + 1 490 98957 67 0 9 13 13 27 58 15 77 26 0 2 82 1 0 33 0 1 45 14 13 36 chain 6096 chr3 198022430 + 112717547 112717627 MER21A 919 - 839 919 184453 80 chain 6606 chr3 198022430 + 112721531 112721627 LTR47A 437 - 337 433 180413 9 1 0 15 1 0 15 0 3 40 1 0 14 chain 3213 chr3 198022430 + 112727391 112727502 L1MA3 4352 + 4236 4346 220689 24 2 0 10 39 44 7 2 0 9 2 0 16 chain 6009 chr3 198022430 + 112742289 112742365 Tigger4b 360 - 283 359 185160 76 chain 74520 chr3 198022430 + 112743123 112744083 LTR5_Hs 974 - 0 974 46259 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 535229 chr3 198022430 + 112744864 112751322 HERVK-int 6823 - 241 6823 3564 6 5 0 7 1 0 6 1 0 17 3 1 5 2 0 8 17 12 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 172 101 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 58 9 297 525 0 5 2874 0 1 253 1 0 7 2 0 372 1 0 439 1 0 313 1 0 18 1 0 24 2 0 207 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 74520 chr3 198022430 + 112751322 112752282 LTR5_Hs 974 - 0 974 46258 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 162107 chr3 198022430 + 112764491 112766439 SVA_D 2077 - 1 2077 23046 650 0 49 30 0 1 90 48 0 37 49 0 133 1 0 15 0 51 59 0 1 10 17 59 126 0 40 75 0 40 431 0 2 177 chain 3243 chr3 198022430 + 112765261 112765309 SVA_D 2077 - 948 997 91394 32 0 1 16 chain 3243 chr3 198022430 + 112765347 112765395 SVA_D 2077 - 1034 1085 91394 5 1 4 42 chain 77706 chr3 198022430 + 112767762 112768602 L1PA3long 6157 - 1107 1947 44519 840 chain 100517 chr3 198022430 + 112768602 112769707 L1PA3long 6157 + 5056 6157 36624 328 1 0 510 3 0 263 chain 143836 chr3 198022430 + 112792458 112794616 L1PB1 5432 - 10 3469 25511 18 1 0 13 1 0 21 1 0 24 25 20 15 13 4 7 2 0 4 1 0 10 10 9 41 1 0 15 2 1 40 17 1384 47 4 16 75 0 5 63 7 8 6 0 1 6 0 1 41 4 6 310 1 0 198 3 0 23 1 0 161 14 15 166 51 11 76 23 12 45 20 9 503 1 2 27 chain 4597 chr3 198022430 + 112801177 112801231 L1PA15 4387 + 4049 4103 199669 54 chain 22744 chr3 198022430 + 112848524 112848797 AluSp 311 - 17 290 116851 12 0 1 16 1 0 244 chain 42554 chr3 198022430 + 112868306 112868843 MER41A 554 + 0 554 65956 297 5 22 235 chain 52993 chr3 198022430 + 112882912 112883544 L1PA8 5853 + 5227 5853 57019 381 2 0 69 1 0 12 1 0 54 1 0 17 1 0 93 chain 11353 chr3 198022430 + 112979641 112979833 MER1B 344 + 158 339 154888 37 3 0 25 11 7 41 17 13 58 chain 120280 chr3 198022430 + 113030469 113032392 THE1A-int 1579 + 0 1574 30949 272 0 1 146 349 0 125 34 11 58 1 2 29 24 27 284 0 3 254 0 15 347 chain 101997 chr3 198022430 + 113036913 113038542 L1P4a 3072 + 154 1757 36264 122 1 0 5 0 9 8 64 22 37 0 1 41 87 98 44 0 3 130 0 1 170 8 6 41 6 8 110 65 56 68 1 2 5 2 0 49 2 4 130 1 0 358 2 3 72 chain 29356 chr3 198022430 + 113039459 113039838 MLT2A1 477 - 93 477 87263 214 9 6 12 0 1 136 0 7 8 chain 30800 chr3 198022430 + 113041162 113041640 L1PA16 3655 + 2799 3302 82863 75 3 24 22 1 0 62 2 3 106 30 35 78 8 7 91 chain 116736 chr3 198022430 + 113057407 113059219 HUERS-P2-int 2744 - 926 2742 32216 122 5 15 290 1 6 25 5 1 123 2 1 31 0 1 81 0 1 29 0 11 150 3 24 106 8 10 42 15 13 17 0 3 186 0 2 25 2 5 57 6 4 4 1 0 99 42 18 21 9 5 12 2 0 6 49 45 37 22 18 9 3 0 18 2 1 53 8 5 31 2 1 22 15 16 14 chain 52075 chr3 198022430 + 113064866 113065863 LTR12 884 + 0 884 57579 25 1 0 318 347 1 34 2 0 186 0 236 84 chain 22973 chr3 198022430 + 113065227 113065533 LTR12 884 + 55 336 115742 21 25 0 260 chain 243518 chr3 198022430 + 113065895 113068966 HERV9-int 5642 + 12 4824 16588 172 0 2 42 0 11 226 6 8 31 0 3 92 22 21 93 0 4 79 2 1 195 0 7 6 7 0 98 82 0 743 0 1 344 0 1 184 0 4 10 0 1 449 0 1795 177 0 1 11 chain 5970 chr3 198022430 + 113066972 113067044 HERV9-int 5642 + 1029 1101 185517 72 chain 17849 chr3 198022430 + 113073673 113073906 L1PBa 3878 + 163 393 133246 50 1 0 24 3 1 155 chain 6390 chr3 198022430 + 113073938 113074057 L1PB1 5432 + 5311 5422 182099 15 13 10 10 2 0 24 1 0 34 1 0 14 1 0 4 chain 22282 chr3 198022430 + 113074364 113074624 L1PA6 6164 + 5805 6162 118988 131 0 95 120 0 2 9 chain 522092 chr3 198022430 + 113085438 113091583 L1PA6 6164 + 0 6162 4947 282 4 5 280 1 0 131 0 4 452 4 0 100 1 0 1078 0 2 67 0 3 175 0 4 210 0 4 38 0 1 347 1 2 4 0 1 57 10 6 27 0 2 779 1 3 13 1 0 631 0 1 423 0 3 260 1 0 767 chain 5270 chr3 198022430 + 113093389 113093463 L1MB2 1706 + 1246 1317 192315 33 5 2 36 chain 25488 chr3 198022430 + 113102610 113102894 L1PA7 6471 - 12 296 102279 284 chain 11919 chr3 198022430 + 113113468 113113646 MER30 238 - 0 192 152519 36 7 4 71 4 21 60 chain 23183 chr3 198022430 + 113125226 113125485 AluY 311 + 37 297 114756 95 0 1 164 chain 163748 chr3 198022430 + 113129011 113130874 L1PA5 6144 - 13 1889 22842 137 1 2 210 0 1 407 2 1 72 0 4 632 5 9 311 0 4 86 chain 21541 chr3 198022430 + 113130874 113131121 L1PA5 6144 + 3995 4244 121331 134 0 1 91 0 1 22 chain 328663 chr3 198022430 + 113131274 113135240 L1PA8A 6298 - 9 3992 12252 98 0 1 691 6 10 447 0 10 326 0 1 998 1 0 341 1 0 12 0 1 384 0 4 115 3 0 89 1 5 101 0 1 42 0 3 32 0 4 59 14 4 93 1 0 111 chain 21434 chr3 198022430 + 113139854 113140188 L1PA17 2846 + 2371 2697 122392 128 4 0 18 34 32 83 1 0 18 1 0 47 chain 29998 chr3 198022430 + 113145152 113145527 THE1C 375 + 0 375 84820 163 0 1 185 1 0 26 chain 28057 chr3 198022430 + 113165712 113166066 THE1A 353 + 0 353 92801 111 1 0 242 chain 107499 chr3 198022430 + 113177032 113178275 SVA_B 1603 + 7 1598 34846 12 26 10 12 9 12 574 0 361 610 chain 4432 chr3 198022430 + 113182295 113182424 L1MB7 1623 + 1369 1475 201556 7 1 0 34 50 31 8 3 0 26 chain 556587 chr3 198022430 + 113190654 113196793 L1PA3long 6157 + 6 6157 660 312 0 7 2230 1 0 540 0 6 70 1 0 1188 0 1 768 0 1 255 1 0 773 chain 61676 chr3 198022430 + 113197828 113198502 L1PA3long 6157 - 4 678 52047 674 chain 291016 chr3 198022430 + 113200264 113203824 L1PA7 6471 - 1 3615 13959 155 10 8 169 0 1 144 0 3 255 0 1 60 1 2 55 0 3 102 1 4 5 3 0 154 1 0 154 4 8 38 0 1 746 9 36 89 1 3 517 0 1 56 8 0 37 0 2 104 4 8 174 0 1 319 0 2 5 22 34 158 chain 22347 chr3 198022430 + 113205079 113205355 L1P1 4361 + 3011 3292 118711 39 0 1 169 7 11 61 chain 15685 chr3 198022430 + 113214809 113215033 MER30 238 + 0 238 139315 15 7 25 70 5 4 85 3 0 39 chain 12640 chr3 198022430 + 113229005 113229197 L1PA10 4194 + 3976 4161 149686 33 8 4 47 0 1 55 3 0 34 2 1 10 chain 27472 chr3 198022430 + 113234185 113234491 AluYk4 311 + 0 306 94740 306 chain 4904 chr3 198022430 + 113340752 113340811 MER3 215 + 94 153 196235 59 chain 37872 chr3 198022430 + 113344290 113344785 L1MA3 4352 - 657 1159 72315 192 0 1 105 0 8 8 18 16 172 chain 16612 chr3 198022430 + 113351557 113351746 7SLRNA 320 + 7 196 136631 189 chain 13477 chr3 198022430 + 113356725 113356883 LTR12D 1347 + 0 158 146428 158 chain 4064 chr3 198022430 + 113360307 113360362 Charlie1a 1436 - 1242 1297 206428 22 1 0 4 0 1 28 chain 33269 chr3 198022430 + 113394678 113395117 THE1C-int 1605 - 1166 1605 78775 67 0 2 13 0 1 192 3 0 54 2 0 93 3 5 12 chain 21974 chr3 198022430 + 113395157 113395475 THE1C 375 - 40 364 120339 104 8 11 34 5 6 22 0 2 73 6 5 16 0 1 50 chain 1501 chr3 198022430 + 113420610 113420776 Tigger1 2417 - 452 623 140211 76 0 5 90 chain 26066 chr3 198022430 + 113421611 113421912 AluSp 311 - 8 311 99771 286 3 5 12 chain 624 chr3 198022430 + 113422244 113422313 Tigger1 2417 - 850 918 140211 20 1 0 48 chain 3858 chr3 198022430 + 113422634 113422684 HSMAR2 1300 - 21 71 209471 50 chain 26814 chr3 198022430 + 113425588 113426334 L1PA15 4387 + 3656 4103 96927 157 2 0 8 0 1 8 12 9 52 3 1 28 40 39 17 297 5 122 chain 21566 chr3 198022430 + 113443539 113443891 THE1C 375 + 0 373 121900 37 0 5 21 8 10 11 1 12 46 7 11 21 1 0 6 18 19 151 1 0 23 chain 18922 chr3 198022430 + 113445375 113445604 AluSx4 309 + 65 294 130311 229 chain 3707 chr3 198022430 + 113451822 113452052 L1MB7 1623 - 478 658 211840 17 149 101 35 6 5 18 1 0 4 chain 6650 chr3 198022430 + 113485459 113485542 MLT1A0 366 - 226 309 180092 83 chain 20836 chr3 198022430 + 113486506 113486781 AluSg7 307 - 16 298 124498 11 4 5 144 1 0 104 0 7 11 chain 11088 chr3 198022430 + 113498715 113498875 L1PA8 5853 - 0 158 155855 92 6 5 15 8 7 39 chain 21160 chr3 198022430 + 113501462 113501730 AluSg7 307 - 15 269 123343 7 14 0 247 chain 8756 chr3 198022430 + 113546578 113546685 MER30 238 - 131 238 166881 107 chain 15462 chr3 198022430 + 113556773 113557061 MER4B 649 - 282 649 140010 8 0 15 85 32 55 30 0 44 9 13 14 81 11 7 19 chain 66642 chr3 198022430 + 113568163 113568907 SVA_D 2077 - 21 1121 49811 358 0 2 241 1 352 65 0 2 49 0 1 30 chain 87992 chr3 198022430 + 113580647 113581729 MER11B 1079 - 5 1079 40377 15 9 10 131 0 1 135 8 0 13 0 2 172 9 8 328 3 0 259 chain 3307 chr3 198022430 + 113612582 113612624 MER94 134 + 79 123 218829 5 0 2 37 chain 5919 chr3 198022430 + 113687605 113687686 L1MA4 2864 - 825 915 185991 22 0 5 6 1 0 4 0 5 48 chain 72701 chr3 198022430 + 113689425 113690233 L1PA4 6152 - 9 820 47168 138 1 2 310 0 2 359 chain 14870 chr3 198022430 + 113711411 113711576 L1PA4 6152 + 5978 6143 141713 165 chain 74272 chr3 198022430 + 113714452 113715402 L1PA8 5853 - 476 1443 46373 93 0 2 61 1 0 133 1 0 76 37 38 67 0 1 100 0 14 152 0 1 229 chain 35861 chr3 198022430 + 113715418 113715871 L1PA8 5853 + 5394 5840 75050 170 1 0 44 2 0 70 2 1 7 1 0 54 3 2 18 1 0 80 chain 13258 chr3 198022430 + 113736536 113736685 L1PA8A 6298 + 6135 6284 147256 149 chain 181681 chr3 198022430 + 113741672 113743697 L1PA4 6152 + 4104 6141 20826 4 0 1 235 0 4 989 0 4 11 0 3 786 chain 7333 chr3 198022430 + 113757933 113758067 Tigger3b 1229 + 197 337 175207 55 2 3 28 1 6 22 6 9 8 3 0 9 chain 23286 chr3 198022430 + 113773197 113773488 AluY 311 + 0 287 114274 118 5 0 14 7 8 147 chain 42524 chr3 198022430 + 113823351 113823988 Tigger3b 1229 + 23 655 65989 114 7 0 80 0 1 60 5 0 9 5 12 14 15 18 7 2 0 215 1 0 9 12 0 11 1 12 70 chain 21380 chr3 198022430 + 113825304 113825545 L1PA5 6144 + 5903 6144 122586 241 chain 74464 chr3 198022430 + 113850457 113851419 L1PA8 5853 + 4887 5853 46291 116 1 6 77 0 1 4 1 0 35 0 1 61 1 0 26 0 4 60 0 2 284 1 0 46 2 0 69 1 0 9 6 5 50 1 0 17 2 1 92 chain 30001 chr3 198022430 + 113854031 113854347 AluYb8 318 - 2 318 84807 316 chain 23285 chr3 198022430 + 113857135 113857492 THE1B 368 - 0 368 114282 56 7 6 63 11 19 10 18 23 19 4 3 169 chain 9107 chr3 198022430 + 113870936 113871197 L1PB1 5432 - 8 209 165036 4 1 0 16 1 0 11 0 3 8 1 2 9 10 9 16 2 0 14 8 5 19 61 8 4 1 0 15 1 0 44 1 0 14 chain 44926 chr3 198022430 + 113929314 113929906 L1PA7 6471 + 5881 6468 63140 5 2 0 507 0 36 9 36 1 22 4 0 7 chain 19119 chr3 198022430 + 113953043 113953312 AluSc8 310 + 11 289 129769 17 24 29 75 0 3 103 0 1 50 chain 148851 chr3 198022430 + 113955987 113957701 LTR12C 1709 - 0 1709 24778 216 7 0 265 7 13 97 9 6 275 1 0 837 chain 62204 chr3 198022430 + 113973927 113977701 L1MA3 4352 - 0 1940 51802 22 6 2 10 2 1 29 1 0 6 1 0 23 7 5 18 4 0 35 0 2 25 1 4 58 3 0 6 40 15 185 6 1 7 1 0 14 7 9 21 2715 909 220 0 2 36 0 15 155 5 0 105 chain 52212 chr3 198022430 + 113976545 113977160 L1PA5 6144 + 5518 6134 57492 291 2 3 322 chain 147011 chr3 198022430 + 113977869 113980088 MER41-int 2638 - 2 2198 25019 18 2 3 88 0 1 113 0 5 85 5 14 113 1 0 101 3 0 41 15 21 43 28 14 6 3 0 51 68 3 6 0 1 33 2 0 19 2 0 104 0 1 30 0 1 52 1 0 109 7 7 28 0 26 47 7 8 58 21 31 28 1 0 7 1 0 101 0 1 145 5 1 42 1 0 208 11 25 117 1 0 136 0 2 9 5 3 71 1 0 19 chain 384499 chr3 198022430 + 113995738 114000000 L1HS 6032 + 0 4272 10630 256 1 0 108 0 1 124 0 6 553 0 4 3220 chain 159520 chr3 198022430 + 114000000 114001740 L1PA3long 6157 + 4400 6147 23395 1612 0 7 128 chain 7186 chr3 198022430 + 114003761 114003852 Tigger1 2417 - 80 171 176172 91 chain 22753 chr3 198022430 + 114015734 114016010 AluSp 311 - 5 279 116814 113 2 0 161 chain 42437 chr3 198022430 + 114022516 114023085 L1PB1 5432 - 334 944 66096 73 0 25 113 2 5 118 3 9 132 2 5 87 0 4 39 chain 22372 chr3 198022430 + 114196336 114196641 AluSp 311 - 6 311 118616 136 31 31 138 chain 19847 chr3 198022430 + 114236425 114236709 AluSg7 307 - 9 296 127665 20 40 42 109 0 1 115 chain 536416 chr3 198022430 + 114250538 114256992 L1PA7 6471 + 0 6468 3392 187 42 43 125 0 1 46 4 5 959 0 1 342 0 1 70 0 1 93 1 3 642 0 2 120 1 0 304 9 8 1057 1 0 170 18 13 329 0 2 141 0 8 282 5 4 173 0 1 305 0 1 184 0 2 476 0 2 7 2 0 21 1 0 30 2 7 284 1 0 9 4 0 7 chain 2988 chr3 198022430 + 114282330 114282367 MADE2 80 - 13 50 225277 37 chain 24579 chr3 198022430 + 114307655 114308015 THE1C 375 - 2 375 107087 79 5 7 45 19 36 6 7 0 13 0 1 186 chain 29477 chr3 198022430 + 114374089 114374398 AluYb9 318 - 9 318 86733 309 chain 90828 chr3 198022430 + 114380751 114381745 L1PA2 6032 - 1 1004 39262 903 0 9 91 chain 100691 chr3 198022430 + 114381745 114382834 L1HS 6032 + 1374 2463 36584 1089 chain 10155 chr3 198022430 + 114385940 114386070 MER85 139 - 0 139 159825 26 1 0 13 0 10 90 chain 33825 chr3 198022430 + 114397900 114398292 L1PA7 6471 + 5230 5621 77899 213 2 1 177 chain 28860 chr3 198022430 + 114398293 114398644 L1PA7 6471 + 5621 5972 89617 28 0 1 222 1 0 100 chain 39715 chr3 198022430 + 114398647 114399130 L1PA7 6471 + 5974 6458 69734 135 0 1 348 chain 5322 chr3 198022430 + 114447681 114447756 L1P 111 - 2 76 191799 8 1 0 66 chain 4054 chr3 198022430 + 114453546 114453591 MER6A 605 - 194 239 206576 45 chain 29568 chr3 198022430 + 114466483 114466793 AluYf4 310 + 0 310 86345 310 chain 9378 chr3 198022430 + 114488444 114488617 L1PB1 5432 + 5114 5278 163659 20 1 0 13 16 11 9 2 0 52 1 0 11 7 7 41 chain 69978 chr3 198022430 + 114496323 114497089 L1PA4 6152 + 5372 6138 48400 766 chain 24822 chr3 198022430 + 114504989 114505291 L1PA7 6471 - 4 301 105757 6 5 0 133 1 0 4 0 1 153 chain 110392 chr3 198022430 + 114530703 114532064 LTR12C 1709 - 0 1709 34097 84 15 14 69 0 102 212 0 4 106 4 2 4 1 0 160 0 161 50 0 41 319 0 43 297 7 8 33 chain 23665 chr3 198022430 + 114536087 114536370 AluSp 311 + 4 287 112224 283 chain 9612 chr3 198022430 + 114594994 114595186 L1PB1 5432 - 4 182 162528 8 2 0 16 1 0 13 1 0 21 1 0 23 3 1 14 8 5 19 16 13 15 1 0 30 chain 29256 chr3 198022430 + 114602763 114603071 AluYa5 310 - 2 310 87758 308 chain 26265 chr3 198022430 + 114609294 114609602 L1PA5 6144 + 5830 6139 98955 145 0 1 163 chain 24469 chr3 198022430 + 114640441 114640712 L1PA5 6144 + 5864 6135 107708 271 chain 35253 chr3 198022430 + 114657271 114657679 L1PA7 6471 + 6061 6469 75858 75 0 1 315 1 0 17 chain 16714 chr3 198022430 + 114684566 114684770 L1MA8 2339 - 737 940 136356 134 1 0 69 chain 8640 chr3 198022430 + 114703108 114703216 L1PA3long 6157 - 3 111 167540 108 chain 346945 chr3 198022430 + 114706945 114710852 L1PA5 6144 - 0 3905 11696 137 4 0 87 1 0 108 0 1 1054 0 1 134 1 0 913 2 0 860 0 2 596 0 2 10 chain 44253 chr3 198022430 + 114715088 114715628 L1PA7 6471 - 33 557 63875 432 21 5 87 chain 26123 chr3 198022430 + 114715628 114715936 L1PA7 6471 + 5609 5916 99514 6 1 0 301 chain 11516 chr3 198022430 + 114732585 114732751 L1MA3 4352 + 3547 3719 154230 24 0 4 116 12 14 14 chain 53098 chr3 198022430 + 114735666 114736349 L1PA10 4194 + 3372 4057 56961 240 2 3 119 0 2 193 7 6 122 chain 26267 chr3 198022430 + 114766785 114767091 AluY 311 + 0 302 98944 109 1 0 24 3 0 169 chain 24017 chr3 198022430 + 114849603 114849907 AluSp 311 - 12 311 110231 11 5 0 288 chain 114908 chr3 198022430 + 114875932 114877510 THE1C-int 1605 + 20 1605 32818 93 0 3 192 1 2 118 17 24 180 5 6 17 40 0 8 1 41 55 8 2 113 6 7 111 0 1 502 4 3 6 0 1 27 1 0 73 chain 273917 chr3 198022430 + 114895520 114898918 L1PA7 6471 - 2 6471 14977 35 9 0 7 1 10 563 0 2 233 1 0 494 0 3065 31 1 0 124 1 4 137 1 0 778 0 1 64 3 0 5 0 3 28 1 0 226 0 5 466 25 23 102 0 1 62 chain 24281 chr3 198022430 + 114899921 114900372 MLT2A2 560 + 0 560 108770 102 0 1 38 92 91 60 0 98 16 4 15 81 17 17 41 chain 11034 chr3 198022430 + 114902539 114902693 MSTA-int 1630 + 1477 1630 156079 37 1 0 88 8 9 14 1 0 5 chain 16671 chr3 198022430 + 114902820 114903030 MER4A1 472 + 0 206 136482 174 0 1 10 6 1 20 chain 102478 chr3 198022430 + 114903030 114904293 LTR12C 1709 - 0 1709 36138 61 0 1 419 0 4 16 1 0 90 8 443 65 0 1 254 0 1 52 7 8 27 0 1 173 0 3 90 chain 136704 chr3 198022430 + 114916289 114917828 L1P1 4361 - 44 1578 26690 12 1 0 157 1 0 465 2 0 318 1 0 85 1 0 444 0 1 52 chain 30754 chr3 198022430 + 114917828 114918180 L1PA5 6144 + 5787 6139 82946 352 chain 50014 chr3 198022430 + 114934560 114935199 L1PA6 6164 - 8 613 59005 295 12 0 3 24 0 197 0 2 108 chain 8699 chr3 198022430 + 114935706 114935844 Tigger1 2417 + 2294 2416 167201 50 0 1 18 8 0 3 9 0 50 chain 3180 chr3 198022430 + 114941658 114941693 MADE1 96 - 61 96 221343 35 chain 30777 chr3 198022430 + 114950080 114950469 MLT2A1 477 + 0 393 82909 140 0 1 28 1 5 149 1 0 70 chain 25393 chr3 198022430 + 114967779 114968090 L1PA5 6144 + 5843 6143 102722 148 13 0 139 1 3 10 chain 465764 chr3 198022430 + 114973296 114979886 L1PA8A 6298 + 34 6263 8195 6 1 0 16 1 0 19 16 5 11 5 0 6 7 9 13 19 10 19 1 10 11 2 1 6 1 0 13 25 20 12 1 0 8 1 0 6 1 0 6 2 1 17 5 0 7 2 0 42 1 0 20 8 0 80 32 27 67 6 5 4 1 0 34 8 0 3 0 1 259 21 17 132 1 0 142 72 61 508 2 0 69 0 1 5 1 0 85 16 1 360 9 2 4 1 0 43 1 0 148 2 4 76 0 11 88 1 2 128 0 30 647 2 0 18 0 1 1 4 0 347 0 1 18 4 9 4 0 1 106 6 7 235 4 3 21 313 0 140 1 3 211 3 0 292 12 13 22 1 0 122 0 1 6 9 8 206 0 1 320 0 3 280 1 3 405 9 9 74 chain 49285 chr3 198022430 + 114986752 114987496 L1PA11 4918 + 3838 4578 59523 66 0 4 202 0 1 220 1 6 55 18 16 34 0 7 23 2 0 17 1 0 19 4 0 9 32 23 10 8 7 10 2 0 11 chain 15179 chr3 198022430 + 114992362 114992530 AluYb8 318 - 15 317 140825 151 0 134 17 chain 28792 chr3 198022430 + 115024251 115024558 AluYa8 305 + 0 305 89938 122 2 0 183 chain 557392 chr3 198022430 + 115031159 115037317 L1PA3long 6157 - 5 6157 568 142 0 1 702 1 0 1013 0 2 698 0 1 204 12 0 2197 0 3 442 0 1 429 1 0 317 chain 2675 chr3 198022430 + 115061866 115061908 MER63B 433 + 69 113 230477 16 2 4 24 chain 77812 chr3 198022430 + 115073457 115074754 L1MA1 4479 + 2900 4172 44611 41 6 7 10 1 0 27 4 12 149 9 11 18 6 1 75 1 0 12 6 0 87 1 0 26 48 45 87 12 10 197 1 0 5 0 1 18 2 0 16 15 14 56 2 1 19 2 0 25 12 13 64 1 0 5 3 0 126 1 0 28 5 3 33 1 0 5 13 9 16 chain 9381 chr3 198022430 + 115085580 115085686 L1PA16 3655 + 2697 2803 163652 106 chain 34601 chr3 198022430 + 115136763 115137195 MER57A1 433 - 0 433 76757 155 0 1 277 chain 53217 chr3 198022430 + 115140173 115140759 L1PA4 6152 - 0 586 56879 586 chain 106585 chr3 198022430 + 115145333 115146513 L1PA4 6152 - 10 1190 35094 1180 chain 50708 chr3 198022430 + 115149069 115149756 L1PA8 5853 + 5139 5853 58497 106 6 11 262 0 29 17 1 0 46 2 0 50 20 19 14 1 0 47 2 1 15 6 5 92 chain 101744 chr3 198022430 + 115162713 115163943 L1PA7 6471 - 5 1238 36332 144 19 20 632 0 1 43 2 3 390 chain 50062 chr3 198022430 + 115181264 115181844 L1HS 6032 - 952 1529 58974 493 3 0 84 chain 73658 chr3 198022430 + 115181846 115182830 L1HS 6032 + 5090 6021 46705 10 1 0 5 0 1 66 2 0 700 6 0 14 59 14 16 16 16 89 chain 27409 chr3 198022430 + 115187605 115187898 L1PA2 6032 - 601 894 94939 293 chain 56494 chr3 198022430 + 115187902 115188514 L1PA2 6032 + 5420 6032 54854 612 chain 5679 chr3 198022430 + 115190114 115190189 MER58D 378 + 258 331 188315 38 2 0 35 chain 27948 chr3 198022430 + 115191697 115192039 L1PA7 6471 + 6126 6466 93173 333 2 0 7 chain 34681 chr3 198022430 + 115197228 115197660 MER57A1 433 - 4 433 76652 9 3 0 420 chain 13452 chr3 198022430 + 115245899 115246064 L1PA5 6144 - 1 160 146521 8 5 0 123 1 0 28 chain 21294 chr3 198022430 + 115286076 115286350 AluY 311 + 1 257 122880 52 16 0 80 2 0 124 chain 33823 chr3 198022430 + 115289108 115289670 L1MA5A 2387 + 1745 2276 77904 37 1 0 136 18 20 95 1 0 38 1 0 34 9 13 37 29 26 34 3 0 15 28 0 46 chain 7567 chr3 198022430 + 115312924 115313039 MER74A 558 - 446 558 173752 62 3 1 16 2 1 32 chain 103457 chr3 198022430 + 115325672 115327245 L1PB1 5432 - 10 1558 35881 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 43 31 15 1 0 45 2 1 16 1 0 7 0 1 43 18 12 12 8 6 24 7 11 178 18 12 94 0 10 15 38 28 140 3 0 151 0 4 282 0 3 192 2 3 117 chain 39349 chr3 198022430 + 115331453 115331968 L1PA10 4194 - 44 553 70255 34 8 4 33 1 0 30 6 1 95 1 2 6 0 2 241 0 1 60 chain 38547 chr3 198022430 + 115388844 115389255 L1HS 6032 - 2 413 71370 411 chain 19062 chr3 198022430 + 115450166 115450943 L1PA10 4194 - 33 808 15721 11 1 0 33 6 3 38 1 0 100 0 47 12 60 16 515 chain 515534 chr3 198022430 + 115451008 115457473 L1PA6 6164 - 4 6164 5615 6 4 0 261 11 0 13 0 3 139 1 4 171 0 7 233 0 6 10 1 0 94 0 1 433 0 1 92 6 18 187 5 1 1294 2 1 851 8 0 120 0 2 170 1 0 581 311 0 198 6 7 18 1 0 579 1 0 194 1 0 156 9 12 297 chain 80075 chr3 198022430 + 115457486 115460750 L1PA10 4194 - 858 4019 15721 132 6 10 63 1 0 186 0 4 311 0 1 82 0 4 137 0 1 75 63 0 65 0 5 188 3 5 12 0 1 65 9 10 170 0 1 40 43 1 145 6 16 149 1 2 6 1 0 198 2 3 92 9 11 39 0 1 218 0 1 162 4 36 152 14 14 21 0 1 10 6 2 15 0 1 68 2 1 6 7 0 7 3 0 7 6 1 8 1 0 11 1 0 7 1 0 21 3 1 11 69 41 11 2 0 21 53 43 8 3 0 9 2 0 15 chain 117073 chr3 198022430 + 115463421 115464833 HERV17-int 4347 + 1489 2898 32103 115 2 0 521 14 8 64 0 1 64 0 3 43 9 1 198 0 1 92 0 8 290 chain 768 chr3 198022430 + 115465573 115465745 LTR17 781 + 0 170 133707 59 14 13 84 1 0 14 chain 66777 chr3 198022430 + 115465765 115466508 L1PA4 6152 - 2891 3635 49744 634 1 2 108 chain 255208 chr3 198022430 + 115466509 115469375 L1PA4 6152 + 3268 6138 15973 342 0 1 1153 0 1 116 0 1 437 0 1 818 chain 701 chr3 198022430 + 115469382 115469539 LTR17 781 + 170 326 133707 11 1 0 50 2 0 76 0 2 17 chain 462265 chr3 198022430 + 115470252 115475861 L1PA7 6471 + 834 6467 8317 1515 1 0 136 1 0 155 0 1 31 1 0 71 0 3 223 2 0 221 12 0 9 9 8 39 0 1 260 1 0 426 0 1 234 6 10 96 0 2 400 0 4 87 5 8 53 0 2 119 2 0 173 1 0 161 1 2 309 0 5 15 0 3 39 0 1 35 11 12 365 0 2 60 0 1 107 0 9 208 0 2 9 chain 24157 chr3 198022430 + 115493766 115494069 AluYk4 311 - 11 311 109445 19 7 5 144 1 0 132 chain 68812 chr3 198022430 + 115510227 115511211 LTR12C 1709 + 0 1709 48888 105 1 2 418 6 5 12 6 847 16 0 4 63 122 0 96 0 3 75 13 12 51 chain 4069 chr3 198022430 + 115510916 115510976 LTR12C 1709 + 1514 1602 173576 26 1 0 24 5 34 4 chain 29607 chr3 198022430 + 115511629 115512000 MLT2A1 477 + 0 371 86195 57 0 1 110 5 2 9 0 1 24 0 1 166 chain 40600 chr3 198022430 + 115512329 115512779 LTR7 482 - 0 482 68441 185 0 31 40 0 1 225 chain 304062 chr3 198022430 + 115514039 115517561 HERVH-int 3825 - 0 3825 13241 407 0 1 4 1 0 75 8 218 25 0 3 644 1 0 732 4 31 142 0 1 100 0 1 662 1 0 49 2 1 7 0 20 46 1 52 24 1 0 10 1 0 38 5 0 532 chain 39561 chr3 198022430 + 115517563 115518013 LTR7 482 - 0 482 69947 186 0 31 39 0 1 225 chain 33202 chr3 198022430 + 115518497 115518973 LTR2 463 - 0 463 78879 24 1 0 28 1 0 25 5 6 16 5 6 118 6 0 65 5 0 117 2 1 23 1 0 34 chain 25356 chr3 198022430 + 115566339 115566716 THE1D 372 + 0 372 102917 15 0 2 15 1 0 16 9 0 16 14 15 25 0 1 86 7 9 25 1 0 147 chain 21349 chr3 198022430 + 115573131 115573360 AluYk11 308 - 11 240 122694 229 chain 23069 chr3 198022430 + 115611872 115612145 L1PA7 6471 + 6188 6461 115302 273 chain 51722 chr3 198022430 + 115658716 115659382 LTR12_ 688 - 0 688 57806 113 0 30 209 1 7 43 0 1 121 16 1 163 chain 212012 chr3 198022430 + 115667136 115671200 L1PB2 3958 + 731 3838 18362 394 0 1 125 611 157 67 0 2 98 1 0 17 4 1 33 2 0 140 8 0 64 0 5 184 0 4 363 1 0 64 26 21 13 0 1 4 25 21 270 20 4 106 31 15 19 1 0 37 4 5 53 8 9 48 0 1 230 2 0 56 1 0 14 464 15 47 2 0 12 1 0 56 1 0 38 1 0 70 19 18 48 1 0 72 2 0 22 1 0 63 chain 5915 chr3 198022430 + 115668159 115668225 L1PB2 3958 - 2597 2663 186042 66 chain 41849 chr3 198022430 + 115685863 115686399 THE1B-int 1605 - 1027 1588 66832 127 10 35 399 chain 11366 chr3 198022430 + 115692152 115692297 Tigger4b 360 - 0 143 154834 63 2 0 80 chain 79043 chr3 198022430 + 115791422 115792572 L1PA11 4918 - 422 1642 44032 7 1 0 14 2 0 69 1 0 10 9 8 26 47 31 14 1 5 55 1 2 6 1 0 157 1 0 248 0 1 84 17 8 61 1 0 30 1 0 95 0 4 104 0 94 87 chain 78897 chr3 198022430 + 115809450 115810496 MER11C 1089 - 26 1089 44111 25 0 1 117 1 0 56 0 1 125 0 1 38 1 0 4 1 5 5 0 1 106 16 15 177 1 0 65 0 4 54 16 25 238 chain 29789 chr3 198022430 + 115824203 115824637 LTR7Y 441 - 0 441 85515 197 68 84 57 9 0 103 chain 300338 chr3 198022430 + 115825859 115829645 HERVH-int 3825 - 0 3825 13404 225 7 9 37 1 0 47 7 9 168 0 210 39 9 11 1060 0 4 290 8 35 902 2 1 51 5 4 24 2 1 12 42 0 30 1 0 7 21 18 12 1 0 15 28 0 24 1 0 9 2 1 36 127 0 534 chain 2145 chr3 198022430 + 115828884 115828908 HERVH-int 3825 - 3142 3166 215600 24 chain 5208 chr3 198022430 + 115829053 115829111 HERVH-int 3825 - 3294 3352 182925 58 chain 28562 chr3 198022430 + 115829645 115830075 LTR7Y 441 - 0 441 90907 96 0 2 77 0 3 19 69 84 57 9 0 103 chain 28511 chr3 198022430 + 115832268 115832571 AluYa5 310 - 7 310 91143 303 chain 60121 chr3 198022430 + 115881924 115882578 L1PA4 6152 - 1 654 52759 504 1 0 149 chain 5552 chr3 198022430 + 115883254 115883334 MADE1 96 - 0 96 189547 42 1 17 37 chain 550310 chr3 198022430 + 115922244 115928273 L1PA2 6032 - 0 6032 1403 6 1 0 256 1 0 4183 0 4 909 1 2 672 chain 566002 chr3 198022430 + 116078846 116084873 L1HS 6032 + 3 6032 153 71 0 1 5185 0 1 771 chain 53850 chr3 198022430 + 116100868 116101510 L1PA5 6144 + 5493 6144 56454 41 4 12 30 2 1 115 7 8 398 0 1 45 chain 69107 chr3 198022430 + 116129873 116130633 L1PA3long 6157 + 5397 6157 48759 760 chain 29699 chr3 198022430 + 116145956 116146266 AluYb8 318 - 8 318 85835 310 chain 86545 chr3 198022430 + 116154920 116156235 L1PB1 5432 + 4178 5417 40955 78 1 14 221 0 1 133 0 5 103 0 12 267 11 0 88 47 0 16 29 0 4 0 3 11 1 0 13 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 2 0 12 1 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 25961 chr3 198022430 + 116166847 116167127 L1PA2 6032 - 15 295 100164 280 chain 533505 chr3 198022430 + 116174043 116180134 L1PA4 6152 + 2 6146 3766 578 1 0 128 12 5 597 1 10 1058 0 1 135 0 1 68 0 2 1773 0 2 83 0 43 227 2 0 224 0 1 369 0 4 835 chain 15767 chr3 198022430 + 116196741 116197105 THE1B 368 + 0 368 139065 108 127 132 66 25 24 38 chain 7142 chr3 198022430 + 116203333 116203474 MER3 215 - 46 196 176458 11 6 0 18 1 0 41 20 36 44 chain 22339 chr3 198022430 + 116208873 116209165 AluSq2 311 + 19 311 118746 105 1 0 9 6 7 171 chain 264924 chr3 198022430 + 116224273 116227217 L1PA3long 6157 - 0 2951 15446 11 0 8 760 1 0 2172 chain 18297 chr3 198022430 + 116236763 116237446 L1PA8 5853 - 1 675 51170 91 6 5 15 2 1 26 34 31 12 6 7 44 1 0 11 2 0 45 1 0 7 1 0 379 chain 117387 chr3 198022430 + 116237479 116238815 SVA_B 1603 + 0 1597 32001 22 11 31 560 0 37 93 0 204 650 chain 6563 chr3 198022430 + 116238894 116239139 L1PA8 5853 - 685 935 51170 74 1 0 51 0 4 28 0 2 91 chain 26082 chr3 198022430 + 116239139 116239490 L1PA8 5853 + 4529 4898 99700 34 2 11 91 6 9 190 1 7 27 chain 8620 chr3 198022430 + 116265231 116265324 L1PA3long 6157 + 6064 6157 167638 93 chain 8977 chr3 198022430 + 116274751 116274978 Tigger4b 360 + 24 294 165737 12 5 23 18 39 62 54 38 40 61 chain 29568 chr3 198022430 + 116275283 116275593 AluYf4 310 + 0 310 86344 310 chain 6853 chr3 198022430 + 116283090 116283265 MER53 195 - 6 189 178554 45 74 82 56 chain 424231 chr3 198022430 + 116291560 116296909 HERVL-int 5654 + 0 5654 9441 793 1 0 133 2 0 344 0 2 229 23 24 41 37 365 19 0 5 210 5 0 91 28 0 39 2 4 74 0 1 343 3 11 10 9 0 6 0 1 107 1 0 1114 0 2 456 0 1 398 2 1 221 25 26 141 23 20 202 0 1 15 0 1 97 0 1 105 chain 3733 chr3 198022430 + 116325679 116325723 LTR12 884 + 650 694 211416 44 chain 54500 chr3 198022430 + 116391233 116391891 L1PA6 6164 + 5507 6162 56026 508 0 1 140 4 0 6 chain 24018 chr3 198022430 + 116417316 116417589 L1PA4 6152 + 4076 4349 110225 273 chain 159396 chr3 198022430 + 116417589 116419375 L1PA4 6152 + 4357 6140 23416 1128 1 0 336 1 0 71 1 0 248 chain 27744 chr3 198022430 + 116454957 116455330 THE1C 375 + 2 375 93885 14 6 7 163 1 0 100 0 1 4 2 1 83 chain 357193 chr3 198022430 + 116463680 116467841 L1PA5 6144 + 1968 6144 11427 103 1 5 119 0 2 116 1 0 853 0 1 35 1 0 823 11 12 244 20 21 574 5 6 378 0 2 34 0 3 586 1 0 243 2 5 11 chain 25722 chr3 198022430 + 116469702 116469996 AluY 311 + 2 297 101206 130 0 1 164 chain 28951 chr3 198022430 + 116522732 116523050 AluYb8 318 + 0 314 89215 132 2 0 174 2 0 8 chain 133995 chr3 198022430 + 116526009 116527480 L1PA4 6152 + 4680 6151 27208 1471 chain 25778 chr3 198022430 + 116529890 116530246 THE1B 368 - 0 368 100972 176 2 0 11 6 5 111 6 21 44 chain 12679 chr3 198022430 + 116569692 116569984 MSTA 426 + 78 403 149542 21 69 83 6 1 0 17 7 8 11 0 2 7 5 3 64 6 25 78 chain 4088 chr3 198022430 + 116571915 116571986 MLT2D 439 + 299 368 206098 39 5 0 14 0 5 6 2 0 5 chain 19042 chr3 198022430 + 116589947 116590181 L1PA7 6471 - 1 244 129996 11 1 6 216 0 4 6 chain 87301 chr3 198022430 + 116597296 116598339 MER11C 1089 - 26 1081 40643 176 0 1 142 6 7 45 0 4 77 0 1 289 0 4 66 0 1 242 chain 13584 chr3 198022430 + 116603855 116604040 L1PA8A 6298 - 23 200 146040 8 9 0 80 1 2 87 chain 510613 chr3 198022430 + 116640935 116647586 L1PA7 6471 - 10 6464 6109 12 1 0 134 9 8 173 1 2 139 0 3 290 0 2 80 1 4 214 2 0 218 3 0 67 1 3 200 0 1 81 1 0 624 1 0 65 3 76 69 0 2 208 14 6 53 1 2 118 0 1 202 315 0 304 1 5 128 7 3 331 0 1 100 7 9 179 1 0 373 0 13 240 0 15 9 0 4 258 4 3 38 1 4 37 0 1 4 1 0 581 5 8 6 3 0 101 1 11 295 5 8 5 3 0 323 chain 11467 chr3 198022430 + 116649429 116649629 MER30 238 - 0 196 154443 45 4 1 49 37 36 65 chain 10297 chr3 198022430 + 116704158 116704299 L1PA8 5853 + 5700 5841 159147 40 2 1 19 1 0 65 1 3 13 chain 138199 chr3 198022430 + 116704593 116706113 L1PA3long 6157 + 4637 6157 26455 1520 chain 29859 chr3 198022430 + 116744347 116744706 MER41A 554 + 17 388 85247 169 0 10 11 0 1 97 0 1 82 chain 168599 chr3 198022430 + 116749813 116752249 MER41-int 2638 + 185 2636 22211 28 1 0 4 2 0 31 14 7 8 5 0 33 4 0 41 0 1 118 0 4 9 46 47 16 0 1 10 3 7 128 5 1 39 26 29 55 7 21 136 1 3 301 6 7 53 0 1 77 9 14 147 1 2 174 4 0 53 3 4 30 5 4 46 2 0 35 2 0 150 0 3 163 13 16 99 0 1 213 0 1 80 chain 41175 chr3 198022430 + 116752613 116753114 MER41A 554 + 23 528 67672 385 0 4 116 chain 17386 chr3 198022430 + 116757776 116757991 AluSz6 309 + 14 231 134554 9 0 2 206 chain 11754 chr3 198022430 + 116768607 116768811 L1PB1 5432 + 5237 5420 153245 44 1 0 15 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 131950 chr3 198022430 + 116768854 116770340 SVA_D 2077 + 8 2077 27645 19 12 0 437 0 116 107 0 40 181 0 85 43 0 2 11 0 352 676 chain 19117 chr3 198022430 + 116819159 116819394 L1PA7 6471 - 5 235 129775 7 4 0 136 5 4 83 chain 36535 chr3 198022430 + 116827328 116827813 L1PA8 5853 + 5375 5853 74190 189 9 8 36 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 3079 chr3 198022430 + 116835321 116835356 MIRc 230 + 105 140 223347 35 chain 2324 chr3 198022430 + 116852417 116852537 MER112 246 + 0 102 235085 13 19 1 8 0 18 16 11 17 9 18 0 13 6 0 7 chain 24028 chr3 198022430 + 116857964 116858318 THE1B 368 - 0 368 110172 199 8 7 74 29 44 44 chain 284142 chr3 198022430 + 116926740 116929942 L1PA4 6152 + 2939 6151 14409 755 1 0 258 1 2 226 0 1 1584 0 4 129 1 0 233 0 6 14 chain 18193 chr3 198022430 + 116963653 116963924 L1PA8 5853 - 0 269 132346 93 1 0 15 12 11 47 1 0 8 1 0 38 0 3 25 10 9 20 chain 21952 chr3 198022430 + 116964512 116964868 THE1C 375 + 0 361 120416 50 22 25 103 26 27 71 1 2 6 0 1 64 1 0 12 chain 14582 chr3 198022430 + 116965745 116966023 Tigger3a 397 - 55 354 142654 22 0 2 24 25 18 83 23 0 50 19 68 32 chain 95939 chr3 198022430 + 117012456 117013536 L1PA4 6152 - 9 1091 37837 120 0 1 727 0 1 233 chain 26068 chr3 198022430 + 117013536 117013820 L1PA4 6152 + 4788 5072 99365 284 chain 30012 chr3 198022430 + 117028784 117029096 AluYb8 318 - 6 318 84769 312 chain 94258 chr3 198022430 + 117053928 117054976 L1PA3long 6157 - 0 1046 38275 15 3 0 746 0 1 284 chain 86462 chr3 198022430 + 117054985 117055937 L1PA3long 6157 + 4185 5136 40982 456 1 0 495 chain 475641 chr3 198022430 + 117077389 117083659 L1PA8A 6298 + 34 6282 7865 6 1 0 18 32 21 21 4 1 14 18 14 20 1 0 8 10 13 7 1 0 11 3 1 15 2 0 5 1 0 11 4 3 6 1 0 9 1 0 5 17 14 8 1 0 33 50 36 4 0 1 69 9 0 18 12 9 215 16 17 115 0 18 164 1 0 39 4 9 126 20 7 77 5 2 404 5 1 872 1 3 22 0 1 892 0 4 24 7 8 366 8 50 7 5 0 257 3 2 372 1 0 26 0 8 282 3 0 637 3 2 25 4 2 32 0 1 19 17 0 607 2 3 129 chain 4791 chr3 198022430 + 117138389 117138447 MER3 215 + 76 133 197446 40 1 0 17 chain 3213 chr3 198022430 + 117179203 117179270 L1PREC2 3366 + 3012 3075 220699 39 3 1 7 1 0 4 1 0 12 chain 9561 chr3 198022430 + 117202873 117203000 MER72 723 + 595 721 162772 16 2 1 109 chain 21015 chr3 198022430 + 117227064 117227383 MER4D 903 - 530 851 123864 10 0 3 44 1 0 116 0 2 54 34 32 60 chain 5519 chr3 198022430 + 117261526 117261611 MER5C 305 + 93 177 189850 67 6 5 12 chain 3904 chr3 198022430 + 117263062 117263106 U6 107 + 11 55 208781 44 chain 86562 chr3 198022430 + 117274038 117274995 L1PA3long 6157 + 5201 6157 40944 106 1 0 850 chain 25118 chr3 198022430 + 117278184 117278476 AluYk4 311 + 11 304 104185 139 1 2 152 chain 32634 chr3 198022430 + 117279768 117280133 L1PA4 6152 + 5777 6143 79790 40 0 1 325 chain 51113 chr3 198022430 + 117283605 117284341 L1PA8 5853 + 5147 5853 58244 138 35 1 157 0 1 120 1 0 41 5 3 53 1 0 14 5 4 12 1 0 32 19 29 6 1 0 95 chain 7926 chr3 198022430 + 117336956 117337052 L1PA16 3655 + 3482 3578 171470 96 chain 19805 chr3 198022430 + 117347054 117347352 L1PA8 5853 + 5554 5844 127798 10 1 0 45 3 1 72 1 0 11 3 0 6 5 6 39 1 0 12 6 5 83 chain 11806 chr3 198022430 + 117382377 117382530 MER2 342 - 49 201 153003 85 1 0 67 chain 22818 chr3 198022430 + 117408804 117409105 AluY 311 + 0 297 116498 20 11 6 104 1 2 165 chain 40466 chr3 198022430 + 117461884 117462384 LTR12F 595 - 0 595 68645 87 0 3 250 0 93 17 2 0 41 2 3 101 chain 22531 chr3 198022430 + 117484738 117484989 L1PA4 6152 + 5902 6152 117892 245 1 0 5 chain 276680 chr3 198022430 + 117496834 117500000 L1P1 4361 + 1 3159 14832 553 1 0 148 0 1 1767 8 0 689 chain 266696 chr3 198022430 + 117500000 117502978 L1PA4 6152 + 3165 6143 15351 44 2 1 1019 1 0 1523 0 2 389 chain 5091 chr3 198022430 + 117526291 117526354 MLT1E1A 663 + 545 608 194174 63 chain 74031 chr3 198022430 + 117601232 117602108 L1PA5 6144 + 5291 6137 46497 483 37 7 29 0 1 184 1 0 142 chain 28923 chr3 198022430 + 117671170 117671477 AluYa5 310 - 3 310 89358 307 chain 256633 chr3 198022430 + 117724509 117727692 L1PA7 6471 - 1 3174 15902 14 1 0 105 3 0 41 3 5 688 0 3 410 1 0 221 1 0 28 4 0 380 11 12 302 0 4 43 0 2 152 0 6 46 31 11 163 1 2 105 1 2 23 1 0 4 0 1 400 chain 21774 chr3 198022430 + 117745920 117746208 THE1A 353 + 61 353 121117 22 4 5 106 0 3 156 chain 26520 chr3 198022430 + 117767360 117767677 L1PA5 6144 - 0 322 97972 45 3 1 102 0 7 167 chain 129451 chr3 198022430 + 117767678 117769119 L1PA5 6144 + 4356 5798 28212 759 0 1 682 chain 183170 chr3 198022430 + 117781220 117783249 L1PA3long 6157 + 4129 6157 20661 858 2 0 1021 1 2 147 chain 26998 chr3 198022430 + 117812888 117813220 THE1C 375 + 2 334 96291 332 chain 23076 chr3 198022430 + 117813788 117814078 AluY 311 + 15 303 115269 117 0 1 75 1 0 5 5 3 87 chain 30038 chr3 198022430 + 117814151 117814548 L1PA8 5853 - 0 390 84690 93 1 0 16 1 0 33 14 0 8 14 26 68 2 0 45 1 0 101 chain 10298 chr3 198022430 + 117837456 117837601 MER30 238 + 59 238 159141 38 0 37 65 7 4 35 chain 442702 chr3 198022430 + 117857104 117864275 L1PA8A 6298 - 301 6219 8970 130 0 1 198 0 1 177 2 1 269 0 1 394 4 0 104 0 1 64 1 0 164 1 2 300 0 2 316 0 1 34 7 9 339 1369 0 64 0 8 136 4 1 716 2 1 6 0 1 7 1 0 48 6 3 132 0 2 335 2 0 89 6 7 388 0 14 61 11 105 37 0 16 167 6 35 264 9 10 4 1 0 189 3 4 204 1 0 3 1 0 4 1 0 21 2 0 77 7 1 18 1 0 44 2 1 9 19 14 8 4 0 6 1 0 8 1 0 10 1 0 7 2 0 15 2 0 12 1 0 6 16 14 9 1 0 16 21 13 15 10 7 18 chain 91559 chr3 198022430 + 117859630 117860674 L1PA4 6152 - 16 1063 39108 237 0 1 4 1 0 515 4 6 279 0 1 4 chain 25892 chr3 198022430 + 117860674 117860963 L1PA4 6152 + 4777 5066 99744 289 chain 43862 chr3 198022430 + 117877772 117878291 THE1C-int 1605 - 1014 1546 64374 139 0 7 112 0 6 268 chain 8649 chr3 198022430 + 117880232 117880379 THE1B 368 + 220 368 167477 19 1 4 42 20 18 65 chain 79445 chr3 198022430 + 117882324 117883259 L1PA6 6164 + 5231 6161 43852 173 2 1 594 6 4 4 1 0 26 1 0 128 chain 3445 chr3 198022430 + 117890900 117891149 LTR12C 1709 + 650 698 216282 33 201 0 15 chain 2916 chr3 198022430 + 117907623 117907659 L1MA10 1535 - 28 63 226765 4 1 0 31 chain 50568 chr3 198022430 + 117908459 117909047 L1PA5 6144 + 5554 6144 58605 234 0 1 101 1 0 240 1 3 11 chain 19872 chr3 198022430 + 117909237 117909551 THE1C 375 + 0 313 127587 33 0 2 13 1 0 138 12 13 29 14 5 6 0 5 27 7 8 34 chain 32889 chr3 198022430 + 117910535 117910941 L1PA4 6152 - 1 408 79383 147 1 2 18 6 8 5 2 0 227 chain 22160 chr3 198022430 + 117923473 117923742 AluY 311 + 4 278 119543 125 11 16 133 chain 121930 chr3 198022430 + 117930574 117931929 L1PA4 6152 - 0 1357 30404 148 1 2 109 0 1 1097 chain 21975 chr3 198022430 + 117976963 117977319 THE1B 368 + 0 368 120336 44 23 38 84 8 6 24 12 14 80 3 0 78 chain 31534 chr3 198022430 + 118003735 118004109 L1PA5 6144 + 5757 6138 81592 224 9 16 141 chain 13260 chr3 198022430 + 118016799 118016953 L1PA4 6152 + 5995 6152 147245 141 0 3 13 chain 121757 chr3 198022430 + 118034636 118035975 L1PA3long 6157 + 4817 6157 30459 1189 3 4 147 chain 126203 chr3 198022430 + 118038198 118039789 L1P2 5180 - 2104 3685 29033 313 0 1 307 0 4 123 20 5 98 3 4 117 4 0 490 6 9 110 chain 157972 chr3 198022430 + 118041401 118043436 L1PA7 6471 + 4449 6469 23597 189 0 1 21 6 14 130 9 13 138 1 0 202 0 1 339 33 6 111 0 4 85 1 0 270 0 3 5 3 0 334 1 2 78 8 6 53 3 0 15 chain 436852 chr3 198022430 + 118077309 118082905 HERVL-int 5654 - 35 5654 9135 104 0 1 101 5 6 43 0 3 136 0 1 165 0 1 160 0 3 78 0 1 268 0 1 510 0 4 331 26 0 604 0 1 185 0 2 221 23 24 776 0 1 215 3 0 148 7 8 65 15 13 145 0 6 213 0 1 117 0 1 176 11 12 10 7 31 72 1 0 655 chain 28024 chr3 198022430 + 118101761 118102110 THE1A 353 + 4 353 92918 80 0 1 25 1 0 243 chain 130503 chr3 198022430 + 118102110 118103687 THE1A-int 1579 + 0 1574 27962 496 1 2 5 1 0 398 2 3 165 4 0 505 chain 24122 chr3 198022430 + 118137308 118137643 THE1C 375 - 29 370 109634 9 0 2 20 0 1 35 0 3 77 12 14 172 2 0 8 chain 61500 chr3 198022430 + 118137648 118138473 THE1C-int 1605 - 0 826 52117 69 12 11 20 3 4 335 16 17 370 chain 4393 chr3 198022430 + 118149340 118149411 L1P4 1494 - 104 174 202026 35 10 9 26 chain 14394 chr3 198022430 + 118149421 118149654 L1PA15 4387 - 237 467 143223 19 1 0 15 17 16 10 13 13 142 1 0 15 chain 44353 chr3 198022430 + 118152047 118152537 L1PA3long 6157 + 5667 6157 63750 490 chain 23962 chr3 198022430 + 118164378 118164708 THE1A 353 - 23 353 110556 234 1 0 38 18 19 39 chain 113489 chr3 198022430 + 118168354 118170116 L1PA11 4918 - 289 2039 33226 18 47 33 11 2 0 13 1 0 15 13 9 10 22 13 19 1 0 13 2 0 65 13 11 4 1 0 63 43 42 94 0 2 142 0 1 272 73 84 184 0 2 104 2 6 202 0 1 71 0 2 9 0 1 35 4 5 126 1 0 4 0 1 63 chain 372079 chr3 198022430 + 118177041 118181715 L1PA7 6471 + 1782 6468 11022 121 13 16 122 0 1 124 4 9 455 1 2 108 6 7 549 11 12 141 0 4 44 1 0 159 2 0 176 0 4 174 7 0 65 0 8 398 5 6 38 15 10 15 0 1 23 1 0 5 0 1 83 1 0 286 6 0 121 0 1 550 1 0 77 0 2 219 0 3 87 0 1 34 1 2 9 0 1 79 1 0 91 3 0 86 5 6 140 1 0 10 chain 520265 chr3 198022430 + 118235584 118241747 L1PA6 6164 + 0 6161 5128 371 0 8 12 20 0 564 0 1 1286 0 1 442 8 1 593 0 2 32 5 6 383 0 1 716 0 1 258 0 1 87 3 1 492 0 7 46 0 4 845 chain 17995 chr3 198022430 + 118254878 118255104 AluSc 308 + 65 299 132869 53 1 9 172 chain 176843 chr3 198022430 + 118284377 118287181 L1PB1 5432 - 23 2610 21267 5 1 0 13 1 0 21 1 0 24 24 19 19 25 13 12 6 5 41 19 17 51 2 0 11 26 20 22 3 0 11 215 2 20 1 4 104 2 1 310 0 10 33 11 12 230 12 8 565 13 12 50 0 1 6 3 1 15 2 0 137 0 1 4 1 0 111 28 43 141 10 20 49 5 4 153 0 1 4 0 1 210 1 0 20 chain 44122 chr3 198022430 + 118313279 118313817 MER41A 554 + 15 553 64053 538 chain 70726 chr3 198022430 + 118324247 118325038 L1PA3long 6157 - 0 792 48055 453 1 2 337 chain 9148 chr3 198022430 + 118325068 118325170 L1PA3long 6157 + 6055 6157 164820 102 chain 390541 chr3 198022430 + 118327434 118333162 L1PB1 5432 + 60 5420 10435 473 28 35 40 1 0 183 7 8 46 0 3 12 0 1 10 5 7 50 16 17 304 0 4 18 0 3 23 9 6 73 0 9 12 5 0 13 0 1 208 2 0 29 0 1 397 1 0 220 0 3 93 0 1 11 0 4 116 6 0 9 1 0 177 13 14 127 1 0 6 8 3 154 10 9 87 12 13 547 289 0 90 1 10 76 10 14 278 0 1 26 8 0 346 0 1 4 1 0 49 0 2 68 28 25 457 0 1 15 79 11 26 1 0 6 1 0 11 6 2 8 2 0 53 2 1 15 1 0 41 34 20 30 8 5 14 2 0 19 13 10 16 1 0 13 1 0 16 chain 30040 chr3 198022430 + 118339856 118340211 L1PA5 6144 - 1 354 84683 8 2 0 345 chain 59731 chr3 198022430 + 118342861 118343539 L1PA5 6144 - 6 684 52977 678 chain 4805 chr3 198022430 + 118389022 118389082 MER5A 189 - 48 108 197304 60 chain 190093 chr3 198022430 + 118397025 118399371 L1PA8A 6298 - 18 2406 20037 127 2 3 311 0 1 169 9 13 101 3 4 56 2 6 82 0 16 110 0 9 72 29 34 810 0 1 463 chain 46074 chr3 198022430 + 118414805 118415390 L1PB1 5432 + 2387 2966 61970 108 5 0 338 2 1 132 chain 69715 chr3 198022430 + 118415455 118416332 L1PB1 5432 + 3029 3911 48517 180 1 2 517 1 4 138 0 1 40 chain 41787 chr3 198022430 + 118416357 118416876 L1PB1 5432 + 3935 4455 66918 235 0 1 198 0 1 5 6 5 75 chain 56698 chr3 198022430 + 118416892 118417774 L1PB1 5432 + 4481 5327 54722 129 14 11 191 25 17 274 1 0 11 1 0 20 1 0 13 27 20 53 2 1 11 6 5 44 4 3 12 1 0 4 20 9 18 chain 5274 chr3 198022430 + 118417805 118417881 L1PB1 5432 + 5346 5419 192268 24 1 0 21 1 0 13 1 0 15 chain 132713 chr3 198022430 + 118436597 118438075 SVA_D 2077 - 0 1867 27477 632 2 0 44 1 50 16 0 205 76 1 138 706 chain 30359 chr3 198022430 + 118452248 118452653 LTR7 482 - 6 482 83758 58 0 1 153 8 40 109 8 46 69 chain 24219 chr3 198022430 + 118457814 118458088 L1PA3long 6157 - 0 274 109106 274 chain 19049 chr3 198022430 + 118458088 118458297 L1PA3long 6157 + 5656 5865 129976 209 chain 23075 chr3 198022430 + 118495799 118496135 L1PA15 4387 - 266 582 115276 17 1 0 172 1 0 40 3 1 60 14 0 19 2 0 7 chain 21249 chr3 198022430 + 118513798 118514059 AluY 311 + 28 291 123024 100 1 2 104 0 1 56 chain 46813 chr3 198022430 + 118525981 118526716 L1PB1 5432 + 4723 5422 61361 371 25 20 20 1 0 13 1 0 11 18 12 49 1 0 18 2 1 43 1 0 15 1 0 4 2 0 11 9 0 16 2 0 5 1 0 15 2 0 23 3 2 19 1 0 9 5 4 18 chain 17390 chr3 198022430 + 118528705 118529069 THE1B 368 - 1 368 134537 47 15 14 56 68 73 42 29 30 86 2 0 19 chain 17446 chr3 198022430 + 118556972 118557321 THE1D 372 - 2 372 134390 123 72 80 10 0 1 66 35 47 43 chain 33815 chr3 198022430 + 118558681 118559184 THE1D-int 1627 - 1116 1627 77918 7 0 9 47 60 59 389 chain 89753 chr3 198022430 + 118563924 118564925 L1PA3long 6157 + 5161 6157 39737 853 0 1 129 6 0 13 chain 21360 chr3 198022430 + 118575919 118576285 THE1D 372 - 0 371 122652 126 46 40 12 0 2 11 16 21 14 7 11 134 chain 86732 chr3 198022430 + 118583389 118584456 MER11B 1079 + 0 1063 40870 225 0 5 29 3 0 333 4 3 122 1 0 22 1 2 31 8 2 256 0 1 32 chain 33243 chr3 198022430 + 118596224 118596747 L1M1 2793 + 2167 2695 78814 23 12 16 13 1 0 43 2 1 34 8 9 25 0 4 18 1 0 63 0 2 15 1 0 169 7 8 18 1 0 45 1 0 12 1 0 10 chain 7434 chr3 198022430 + 118617530 118617676 L1MA3 4352 + 4119 4260 174549 37 32 31 49 4 0 24 chain 557852 chr3 198022430 + 118633090 118639118 L1PA2 6032 + 1 6030 515 3180 0 1 2848 chain 9812 chr3 198022430 + 118642433 118642552 MER85 139 + 0 129 161534 90 0 10 29 chain 25718 chr3 198022430 + 118667530 118667835 AluY 311 + 0 299 101225 129 6 0 170 chain 93896 chr3 198022430 + 118671762 118673257 L1PB1 5432 - 5 1458 38386 5 2 0 18 1 0 12 1 0 22 1 0 24 2 0 14 9 6 16 29 18 12 1 0 41 5 4 12 8 11 42 79 67 101 0 1 78 6 0 125 2 1 133 1 4 22 13 10 341 1 3 4 0 1 11 3 0 30 0 1 28 4 0 199 0 1 10 4 6 7 4 0 12 chain 29338 chr3 198022430 + 118673691 118674268 L1PB1 5432 + 4748 5257 87358 56 50 60 58 6 0 181 73 11 21 1 0 11 32 25 46 22 20 20 chain 24819 chr3 198022430 + 118694413 118694767 L1PA16 3655 + 3288 3619 105777 290 3 0 6 0 3 5 18 0 11 5 0 16 chain 555351 chr3 198022430 + 118720317 118726337 L1PA2 6032 - 0 6032 785 2073 0 11 766 0 1 3181 chain 45526 chr3 198022430 + 118761738 118762325 LTR17 781 - 0 781 62480 48 1 23 217 5 166 43 0 1 106 4 14 163 chain 538212 chr3 198022430 + 118763979 118769996 L1PA3long 6157 + 0 6150 3121 152 0 1 211 1 2 402 8 136 839 2 0 1667 0 1 1873 0 4 862 chain 241415 chr3 198022430 + 118770081 118773665 L1PB1 5432 + 1575 5103 16699 91 4 0 745 0 1 13 0 6 9 4 1 8 3 0 50 2 1 34 306 287 65 1 4 113 8 5 506 1 2 23 33 16 178 2 0 260 0 1 4 1 0 379 8 9 59 5 6 95 1 0 24 18 1 55 6 4 78 0 1 22 6 7 59 2 3 303 chain 382685 chr3 198022430 + 118773669 118777981 L1PA4 6152 + 630 6151 10673 389 0 1 147 0 1208 171 1 0 711 0 1 34 1 0 1004 0 1 1854 chain 4863 chr3 198022430 + 118791778 118791899 LTR12C 1709 - 675 995 157958 15 1 42 23 13 12 34 0 159 35 chain 19447 chr3 198022430 + 118791903 118792157 LTR12C 1709 - 641 937 128832 32 6 8 169 1 41 46 chain 143369 chr3 198022430 + 118794649 118796257 L1PA5 6144 + 4524 6126 25586 999 11 4 216 0 1 382 chain 19404 chr3 198022430 + 118798229 118798590 L1PA15 4387 + 4011 4356 128935 93 1 0 20 1 2 4 1 0 55 1 0 4 24 20 8 1 0 26 0 1 12 19 16 42 3 1 15 5 0 26 chain 16849 chr3 198022430 + 118806002 118806213 L1PB1 5432 + 4891 5098 135981 187 4 0 20 chain 14085 chr3 198022430 + 118806322 118806609 L1PB1 5432 + 5159 5422 144276 9 2 0 52 2 1 15 2 1 43 2 1 15 1 0 4 2 0 9 9 1 16 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 2 1 17 chain 20810 chr3 198022430 + 118811476 118811797 Tigger3b 1229 + 796 1139 124569 55 15 0 7 5 20 69 5 4 37 0 10 93 0 14 11 1 0 23 chain 525096 chr3 198022430 + 118825808 118831592 L1PA3long 6157 - 372 6157 4679 394 8 9 5382 chain 37820 chr3 198022430 + 118834004 118834592 L1MA2 4263 - 255 836 72384 43 2 1 9 1 0 20 15 14 115 12 9 39 1 0 96 1 0 77 5 2 71 5 6 59 5 8 12 chain 121165 chr3 198022430 + 118836448 118838025 THE1B-int 1605 - 5 1605 30647 97 0 1 975 4 0 59 31 56 58 1 0 331 9 11 12 chain 23853 chr3 198022430 + 118838025 118838378 THE1B 368 - 0 368 111169 58 28 27 83 0 2 21 6 5 113 0 15 44 chain 44169 chr3 198022430 + 118847566 118848126 L1PA8A 6298 + 5735 6291 63986 234 0 1 35 0 3 154 0 1 22 0 1 94 10 0 11 chain 10063 chr3 198022430 + 118848475 118848923 L1MA3 4352 + 37 168 160257 69 316 0 49 1 0 13 chain 506615 chr3 198022430 + 118848934 118855068 L1PA6 6164 + 0 6161 6426 423 5 6 138 1 0 58 1 27 176 26 28 67 0 4 250 7 6 71 1 0 16 0 1 91 12 13 49 0 2 899 20 0 196 0 1 74 0 3 111 0 3 580 3 1 404 1 0 193 0 7 406 0 1 313 0 2 32 0 5 127 14 9 127 0 1 1235 2 0 5 chain 4963 chr3 198022430 + 118880860 118881015 L1MB2 1706 + 991 1163 195552 40 79 96 36 chain 542912 chr3 198022430 + 118883301 118889486 L1PA4 6152 + 6 6152 2354 240 51 0 55 0 1 153 13 7 114 1 0 42 1 0 444 0 2 333 1 10 326 0 4 241 1 2 3772 0 3 397 chain 24804 chr3 198022430 + 118915372 118915684 AluSc 308 - 0 308 105867 37 4 0 117 2 0 5 1 3 146 chain 29388 chr3 198022430 + 118922224 118922607 L1PA8A 6298 + 5907 6290 87129 114 1 2 153 4 11 11 8 0 92 chain 3546 chr3 198022430 + 118952220 118952261 MER8 282 + 8 49 214604 41 chain 130319 chr3 198022430 + 118960832 118962389 SVA_B 1603 + 41 1600 28016 632 0 1 114 21 34 11 3 31 21 1 0 99 39 0 616 chain 9061 chr3 198022430 + 118963497 118963605 L1PA4 6152 + 6029 6139 165251 100 0 2 8 chain 280902 chr3 198022430 + 118967419 118971264 L1PB2 3958 + 34 3838 14587 18 1 0 5 13 9 18 5 0 10 19 14 30 2 0 29 2 1 12 1 0 47 1 0 3 2 0 8 0 1 143 4 5 382 5 0 210 0 1 203 1 2 48 0 1 17 7 0 94 5 9 58 0 1 20 9 0 127 9 0 37 1 0 62 0 3 47 0 1 53 1 0 383 0 1 128 15 19 187 3 0 440 0 3 94 0 1 288 2 0 56 1 0 8 1 0 22 5 6 40 2 0 12 4 0 88 1 8 70 1 0 64 1 0 64 10 8 22 1 0 63 chain 29624 chr3 198022430 + 118971747 118972123 THE1C 375 - 0 375 86135 25 1 0 161 3 0 6 0 3 180 chain 36893 chr3 198022430 + 118976384 118976845 LTR2 463 - 0 463 73671 94 0 1 221 6 7 140 chain 468130 chr3 198022430 + 118986348 118992247 L1PA8 5853 + 54 5853 8103 18 2 0 10 1 0 13 49 13 133 0 1 60 18 6 427 8 7 309 1 0 97 7 12 14 0 1 847 6 0 386 0 2 243 7 8 68 9 10 72 0 1 312 0 1 89 5 0 95 0 1 81 0 4 118 0 1 684 0 4 138 5 2 235 13 13 60 0 1 8 13 4 344 0 2 73 1 3 265 0 1 60 0 1 82 57 0 70 1 0 39 0 7 69 1 0 5 6 5 51 2 1 19 5 4 13 0 1 75 chain 21392 chr3 198022430 + 119039635 119039964 THE1B 368 + 0 368 122535 44 0 15 109 1 0 4 2 1 28 35 61 106 chain 52840 chr3 198022430 + 119055955 119056775 LTR12D 1347 - 4 945 57113 158 8 110 23 5 4 29 4 0 160 40 41 112 23 16 96 9 8 18 2 33 133 chain 7551 chr3 198022430 + 119060683 119060776 U6 107 - 3 96 173855 93 chain 37970 chr3 198022430 + 119074338 119074777 L1PA6 6164 - 2 442 72171 124 0 1 315 chain 25093 chr3 198022430 + 119100562 119100855 AluY 311 + 10 305 104329 48 0 1 67 0 1 178 chain 88235 chr3 198022430 + 119105386 119106391 LTR13 1007 - 0 1007 40285 320 0 4 253 2 1 125 1 0 304 chain 4953 chr3 198022430 + 119163496 119163643 MER5A 189 - 6 160 195668 52 75 82 20 chain 23834 chr3 198022430 + 119173356 119173644 AluSc5 308 + 0 289 111288 198 0 1 90 chain 7232 chr3 198022430 + 119177978 119178127 MER68 562 + 42 190 175877 23 4 15 11 37 25 74 chain 5360 chr3 198022430 + 119273840 119273921 MER5A1 166 + 7 93 191439 11 7 12 63 chain 538978 chr3 198022430 + 119282043 119288160 L1PA5 6144 - 15 6140 2995 601 0 1 179 0 1 52 0 5 449 1 2 52 0 1 122 12 13 620 0 1 520 2 1 344 0 2 968 0 2 377 1 0 836 12 7 969 chain 3470 chr3 198022430 + 119382338 119382380 MIRb 242 - 133 175 215809 42 chain 20553 chr3 198022430 + 119404589 119404969 THE1B 368 - 0 368 125463 75 14 6 92 31 26 30 31 32 35 0 1 20 6 7 31 2 0 13 chain 23134 chr3 198022430 + 119406545 119406921 THE1B 368 - 0 368 114977 75 7 6 94 31 24 46 14 15 59 0 1 35 2 0 13 chain 31880 chr3 198022430 + 119419774 119420237 LTR2 463 + 0 463 81046 154 4 5 56 5 0 13 0 5 133 19 20 25 1 0 28 1 0 24 chain 8457 chr3 198022430 + 119472526 119472712 L1PB1 5432 - 8 172 168529 4 1 0 16 1 0 13 1 0 21 1 0 26 2 0 12 11 8 27 22 10 6 1 0 21 chain 12049 chr3 198022430 + 119517374 119517507 AluYc 301 + 159 292 151986 133 chain 4820 chr3 198022430 + 119546263 119546329 L1MA3 4352 + 3836 3901 197116 21 1 0 44 chain 301695 chr3 198022430 + 119562444 119566150 L1PA7 6471 + 2730 6468 13331 221 8 8 163 0 1 212 4 0 149 18 13 77 1 4 208 0 18 31 0 1 525 5 0 157 1 3 111 0 1 35 0 4 230 3 0 137 7 22 400 0 2 49 0 4 18 4 5 11 1 5 66 1 0 259 0 3 256 1 0 168 2 0 5 2 3 146 7 0 7 chain 5901 chr3 198022430 + 119568788 119568859 MER2 342 - 127 199 186177 66 0 1 5 chain 208472 chr3 198022430 + 119571601 119574036 L1PA5 6144 - 826 3271 18609 20 1 5 462 0 1 114 0 2 408 0 1 139 5 6 105 1 0 57 15 17 1108 chain 70232 chr3 198022430 + 119574036 119574828 L1PA5 6144 + 5344 6137 48299 657 0 1 135 chain 40339 chr3 198022430 + 119580954 119581384 L1HS 6032 + 5602 6032 68821 430 chain 6779 chr3 198022430 + 119593183 119593303 MER44A 345 - 132 262 179122 58 12 13 8 0 1 12 4 12 26 chain 5277 chr3 198022430 + 119597948 119598024 L1MA3 4352 - 52 124 192235 12 1 0 6 1 0 23 2 0 31 chain 83594 chr3 198022430 + 119607087 119608201 MER11A 1151 + 0 1151 42075 108 0 2 66 8 0 20 1 0 4 11 10 18 6 0 63 0 2 236 0 3 8 0 7 137 5 6 53 0 4 61 2 1 12 5 38 60 0 1 51 0 1 179 chain 29572 chr3 198022430 + 119690448 119690757 AluYa5 310 - 1 310 86314 309 chain 33809 chr3 198022430 + 119696891 119697354 LTR19A 502 + 0 502 77926 182 20 55 74 1 2 147 0 1 23 0 2 16 chain 497311 chr3 198022430 + 119700076 119706180 L1PA6 6164 + 2 6161 6994 193 0 1 40 0 2 17 9 8 33 14 15 110 5 6 90 0 2 48 1 0 55 1 0 155 0 1 124 1 5 132 0 1 31 1 2 46 7 6 309 1 6 89 0 3 325 0 2 400 12 10 8 0 2 42 6 4 66 0 1 199 5 7 591 9 2 352 0 26 135 1 0 263 1 2 41 0 3 263 0 3 880 0 1 153 0 3 10 1 0 406 0 7 263 18 17 142 chain 40479 chr3 198022430 + 119708825 119709327 LTR19A 502 + 0 502 68620 196 1 0 41 1 0 74 1 2 147 6 7 35 chain 454254 chr3 198022430 + 119722626 119728700 L1PA7 6471 + 5 6469 8603 174 184 380 118 49 59 57 1 76 64 18 17 14 5 6 76 1 22 986 0 2 86 3 2 497 0 13 112 0 1 600 7 8 109 3 2 11 5 0 36 0 1 15 11 15 59 0 2 136 0 3 220 4 0 30 10 7 457 1 2 49 17 50 95 0 4 221 0 22 347 0 1 64 1 0 167 0 27 12 1 0 81 2 1 376 0 1 142 0 1 41 8 0 125 0 1 153 5 0 8 chain 29150 chr3 198022430 + 119795380 119795686 AluYg6 310 + 0 306 88314 306 chain 16637 chr3 198022430 + 119815495 119815723 AluSp 311 - 24 253 136562 123 31 32 74 chain 29522 chr3 198022430 + 119818696 119819084 MER41A 554 - 166 554 86561 12 1 0 76 9 16 5 2 0 189 4 0 90 chain 5050 chr3 198022430 + 119822587 119822695 MamRep137 426 - 226 359 194641 61 33 58 14 chain 22652 chr3 198022430 + 119822756 119823102 THE1B 368 - 12 368 117311 103 22 26 13 0 4 10 7 10 5 1 0 4 0 1 11 1 0 169 chain 80173 chr3 198022430 + 119835118 119836191 MER11A 1151 + 0 1151 43518 55 0 99 45 2 0 29 1 0 66 0 11 11 37 0 72 1 2 21 0 1 147 1 0 84 0 8 166 0 1 13 0 1 30 3 0 33 1 0 98 0 2 90 7 6 60 chain 52152 chr3 198022430 + 119858181 119858909 Tigger1 2417 + 407 1144 57526 128 2 1 4 0 1 21 1 5 46 11 12 160 0 1 87 9 12 5 3 0 146 1 4 104 chain 8440 chr3 198022430 + 119859566 119859766 LTR12C 1709 + 773 1179 168624 64 81 287 55 chain 22317 chr3 198022430 + 119920999 119921282 L1PA8 5853 - 0 278 118843 93 1 0 19 2 1 60 1 0 72 2 0 33 chain 7430 chr3 198022430 + 119929180 119929266 HY3 101 + 14 100 174573 86 chain 7491 chr3 198022430 + 119934528 119934620 MLT1B 390 - 10 102 174201 92 chain 213096 chr3 198022430 + 119953359 119956170 L1PA10 4194 - 82 2918 18289 265 0 2 421 0 1 27 0 4 62 0 18 539 0 2 62 0 3 15 11 15 13 6 0 13 3 1 13 26 26 166 22 24 112 0 1 149 0 4 318 0 4 11 0 1 141 34 18 204 0 2 57 6 7 115 chain 2821 chr3 198022430 + 119969127 119969387 L1MA1 4479 + 2958 3213 47681 24 2 0 176 8 5 50 chain 320410 chr3 198022430 + 119969519 119973796 L1PA11 4918 + 350 4629 12579 38 4 7 76 13 10 60 1 0 21 0 1 4 1 0 239 1 2 185 0 1 210 1 0 107 0 1 4 1 0 92 2 1 334 2 39 31 1 2 356 21 19 18 1 0 25 0 1 4 4 5 13 0 1 410 0 1 24 0 1 22 3 0 379 0 1 226 15 14 327 1 0 184 0 4 210 4 0 102 0 1 95 1 0 70 3 0 64 3 2 12 4 0 68 2 0 14 1 0 21 53 47 11 2 0 11 47 33 18 chain 10817 chr3 198022430 + 119974723 119975720 L1MA1 4479 + 3216 4188 47681 35 1 0 14 4 0 51 5 0 72 3 0 5 11 12 112 3 1 157 0 2 32 0 12 18 3 1 15 1 0 10 0 2 7 2 0 52 1 0 5 11 9 19 1 0 67 13 14 6 1 0 6 3 0 126 1 0 29 2 0 35 1 0 9 1 0 11 3 1 9 8 0 16 chain 40840 chr3 198022430 + 119982555 119983188 LTR9B 643 + 0 643 68115 125 11 13 62 5 7 215 63 67 13 2 9 14 4 0 78 1 0 40 chain 112370 chr3 198022430 + 120008380 120009909 LTR12C 1709 + 0 1709 33571 210 12 9 37 5 6 15 4 0 61 0 43 80 8 0 19 15 33 137 0 119 68 1 0 234 0 47 97 44 13 390 8 7 84 chain 189419 chr3 198022430 + 120011117 120014182 L1PA14 3548 + 135 3267 20106 13 7 5 60 5 4 20 2 1 30 2 0 27 6 4 26 0 4 113 2 5 18 2 1 195 2 1 5 0 1 131 8 10 44 0 4 174 0 1 74 321 19 173 0 7 27 1 0 11 13 17 57 0 1 4 91 443 416 2 6 39 0 1 97 1 0 64 0 6 43 1 0 146 5 0 4 0 1 250 3 1 14 2 0 48 2 0 4 2 0 78 0 1 23 5 11 13 2 0 6 1 0 12 0 1 71 1 0 46 chain 22127 chr3 198022430 + 120024914 120025188 AluY 311 + 0 291 119673 33 3 20 238 chain 30128 chr3 198022430 + 120030311 120030762 LTR2 463 + 0 463 84392 107 59 70 124 0 1 65 2 1 13 0 1 16 0 1 12 1 0 52 chain 20121 chr3 198022430 + 120031420 120031673 LTR21A 479 - 184 479 126768 36 0 3 18 0 2 165 0 38 11 1 0 22 chain 62612 chr3 198022430 + 120034453 120035450 L1PREC2 3366 + 139 1125 51627 31 1 0 5 34 27 7 1 0 26 1 0 10 1 0 10 14 12 22 1 0 101 32 26 361 19 27 42 29 29 99 0 1 150 chain 29679 chr3 198022430 + 120066223 120066537 AluYb8 318 - 4 318 85906 314 chain 554633 chr3 198022430 + 120091462 120097487 L1PA2 6032 - 4 6030 868 16 1 0 3900 0 1 1369 1 2 738 chain 5360 chr3 198022430 + 120106318 120106465 MIR 256 - 65 216 191429 20 15 10 21 16 20 30 21 26 24 chain 8577 chr3 198022430 + 120122701 120122791 AluYa8 305 + 214 304 167863 90 chain 108529 chr3 198022430 + 120132656 120133858 SVA_F 1814 + 0 1812 34553 607 0 613 577 3 0 15 chain 17069 chr3 198022430 + 120161758 120161949 L1PA3long 6157 + 5965 6156 135408 191 chain 6166 chr3 198022430 + 120174634 120174711 MLT1B 390 - 12 89 183826 77 chain 18280 chr3 198022430 + 120195835 120196050 AluSp 311 + 82 297 132127 215 chain 10215 chr3 198022430 + 120231064 120231186 MER50 708 + 564 686 159541 122 chain 6433 chr3 198022430 + 120252947 120253025 L1PA17 2846 + 1518 1596 181754 78 chain 272293 chr3 198022430 + 120257474 120261358 L1PB2 3958 - 120 3919 15063 63 2 1 38 2 1 54 1 0 63 1 0 27 0 1 50 1 0 62 8 0 5 11 0 21 4 0 13 2 0 55 13 8 13 1 0 55 3 1 25 6 13 25 0 1 26 1 5 247 0 1 40 2 4 11 0 1 169 17 18 78 1 2 149 40 15 10 1 2 5 1 0 74 1 0 136 1 2 360 0 1 25 0 1 84 0 3 39 0 1 106 0 1 237 0 1 53 2 1 83 1 0 159 1 0 52 4 0 41 3 4 371 29 21 73 2 0 64 7 0 88 4 5 143 7 4 49 1 0 3 7 0 37 5 3 11 29 24 16 5 0 18 14 10 17 chain 17288 chr3 198022430 + 120266355 120266653 MER4A 717 - 58 415 134812 133 27 34 14 27 37 5 0 2 28 0 40 64 chain 3684 chr3 198022430 + 120266653 120266692 L1PA3long 6157 + 5878 5917 212176 39 chain 543437 chr3 198022430 + 120291868 120298004 L1HS 6032 + 8 6032 2275 132 18 17 99 1 0 521 129 1 120 1 0 5007 0 19 108 chain 353413 chr3 198022430 + 120299619 120303498 L1PA3long 6157 + 2276 6157 11515 914 0 1 1797 0 1 1168 chain 4505 chr3 198022430 + 120307612 120307667 L1MC1 2226 + 734 789 200723 55 chain 59920 chr3 198022430 + 120333974 120334700 L1PA6 6164 - 8 738 52862 71 0 1 59 1 2 328 0 2 267 chain 21245 chr3 198022430 + 120334707 120335023 MER48 407 - 72 407 123037 129 41 60 110 1 0 5 0 1 30 chain 31113 chr3 198022430 + 120335023 120335491 LTR9B 643 - 143 643 82320 34 0 18 9 26 27 145 0 3 54 10 9 13 0 1 76 0 8 30 4 6 67 chain 37399 chr3 198022430 + 120335573 120336019 LTR10F 562 - 0 562 72954 213 0 1 117 0 115 116 chain 198961 chr3 198022430 + 120336318 120339408 HERVIP10FH-int 2884 - 60 2731 19280 30 15 9 14 1 0 16 4 9 41 1 0 66 1 0 87 309 0 278 16 25 30 12 5 164 1 0 133 2 1 133 5 4 15 17 6 39 19 7 16 1 2 25 96 56 13 6 1 130 5 0 63 1 0 9 1 0 9 3 0 7 9 6 26 0 2 212 3 2 199 1 3 26 23 0 225 0 2 55 1 0 223 2 0 1 1 0 16 0 2 172 5 0 56 chain 37212 chr3 198022430 + 120342143 120342617 LTR10F 562 - 0 562 73223 326 9 96 32 1 2 106 chain 66983 chr3 198022430 + 120348390 120349373 L1PREC2 3366 + 1986 2951 49660 216 17 16 38 0 5 101 1 0 12 0 1 377 2 0 54 2 1 39 54 42 12 2 0 5 3 0 8 12 10 28 chain 13110 chr3 198022430 + 120358017 120358225 L1PA16 3655 - 31 228 147811 14 13 7 10 1 0 16 3 0 145 1 0 5 chain 7345 chr3 198022430 + 120367597 120367717 MER4D1 891 + 779 891 175130 27 1 0 15 1 0 47 7 1 22 chain 11975 chr3 198022430 + 120369119 120369269 MER4D1 891 + 697 845 152307 107 1 0 17 1 0 24 chain 78776 chr3 198022430 + 120395706 120396755 MER11C 1089 + 0 1064 44158 208 0 3 35 0 9 62 0 4 65 1 0 146 49 46 112 7 9 38 0 1 127 0 1 54 1 0 144 chain 533943 chr3 198022430 + 120438060 120444796 L1PA4 6152 + 0 6143 3713 567 8 22 643 1 0 9 1 2 907 1 0 47 0 9 626 620 2 86 1 0 1715 1 0 212 0 1 450 0 4 689 0 7 7 7 0 138 chain 12554 chr3 198022430 + 120447421 120447558 L1PA3long 6157 + 6019 6156 150028 137 chain 519380 chr3 198022430 + 120451412 120457463 L1PA5 6144 - 0 6144 5223 188 0 1 654 0 4 145 0 4 321 8 13 178 0 5 260 1 0 20 0 4 1617 0 1 372 0 1 158 0 9 15 0 2 400 0 8 317 1 2 116 0 1 535 5 1 128 0 7 79 0 14 158 0 4 207 0 26 81 0 1 87 chain 221519 chr3 198022430 + 120466096 120468588 L1PA3long 6157 - 0 2485 17780 146 7 0 7 8 15 70 1 0 142 0 1 246 2 0 1235 2 0 509 3 0 114 chain 22175 chr3 198022430 + 120474769 120475127 L1MA2 4263 - 163 511 119470 42 7 0 92 1 0 9 2 1 10 4 6 134 39 36 18 chain 314474 chr3 198022430 + 120477273 120481338 L1PA6 6164 - 3 3779 12829 14 1 0 118 1 0 20 0 1 174 0 1 242 0 2 199 20 0 96 1 2 483 2 0 6 0 2 290 0 4 38 0 3 102 1 5 338 0 4 467 0 6 688 0 1 59 311 17 394 chain 66284 chr3 198022430 + 120504806 120505747 L1PA15 4387 - 260 1200 49964 22 6 5 134 0 3 30 1 0 41 3 1 30 8 7 16 1 0 9 4 0 14 0 2 38 9 11 33 0 4 93 2 3 192 1 0 89 9 7 156 chain 20800 chr3 198022430 + 120537238 120537523 L1PA8 5853 - 0 276 124599 91 3 2 19 6 1 36 0 1 14 1 0 10 1 0 71 2 0 31 chain 16351 chr3 198022430 + 120549592 120549792 MER107 203 + 0 203 137341 176 0 3 24 chain 8404 chr3 198022430 + 120572250 120572407 MLT1B 390 + 7 166 168827 14 1 0 34 1 0 18 14 19 25 7 6 43 chain 142748 chr3 198022430 + 120580598 120582231 L1PA5 6144 - 12 1658 25692 135 9 10 241 1 14 438 1 0 808 chain 20821 chr3 198022430 + 120586310 120586549 L1PA6 6164 - 249 488 124541 239 chain 18858 chr3 198022430 + 120586551 120586786 L1PA6 6164 + 5920 6156 130493 95 6 7 134 chain 3436 chr3 198022430 + 120589019 120589059 MLT1J2 417 + 57 97 216467 40 chain 14812 chr3 198022430 + 120593644 120593818 L1PA5 6144 + 5970 6144 141902 174 chain 86347 chr3 198022430 + 120598877 120599973 L1PA10 4194 + 3060 4161 41023 72 0 5 369 0 1 5 1 0 178 5 6 20 1 2 211 0 3 144 1 0 40 3 0 34 1 0 11 chain 17439 chr3 198022430 + 120605895 120606112 L1PA7 6471 + 6249 6468 134406 154 1 0 31 0 2 22 0 1 9 chain 27763 chr3 198022430 + 120608713 120609083 THE1B 368 - 0 368 93827 74 1 0 126 1 0 104 9 0 8 0 9 47 chain 540483 chr3 198022430 + 120615059 120621200 L1PA4 6152 - 5 6152 2736 504 0 2 1750 6 5 204 1 0 153 0 1 213 6 7 719 1 0 264 0 1 1039 0 1 40 0 1 632 0 1 71 0 1 538 chain 55192 chr3 198022430 + 120651443 120652054 L1PA4 6152 + 5540 6152 55587 468 0 1 143 chain 77510 chr3 198022430 + 120667626 120668717 L1PB2 3958 - 120 1177 44733 56 2 0 10 1 0 19 2 0 27 17 15 32 1 0 62 1 0 77 1 0 89 1 0 12 2 0 64 15 0 4 0 1 7 1 0 54 2 0 344 59 55 129 chain 8387 chr3 198022430 + 120669386 120669483 L1PA2 6032 - 5 102 168918 97 chain 140449 chr3 198022430 + 120669483 120671053 L1PA2 6032 + 4349 5920 26080 319 0 2 417 1 0 779 5 0 7 0 5 42 chain 286038 chr3 198022430 + 120676491 120679766 L1PA5 6144 + 2866 6143 14286 243 0 1 629 0 4 598 0 4 564 3 0 370 2 0 98 1 0 514 1 0 252 chain 504322 chr3 198022430 + 120680126 120686275 L1PA6 6164 - 2 6160 6579 80 4 5 780 2 0 644 3 5 612 4 8 811 2 1 26 0 1 172 4 5 15 0 1 124 0 1 543 7 0 208 0 3 154 0 1 510 2 0 723 1 5 157 1 0 47 0 2 256 1 0 23 0 2 37 2 0 5 0 2 189 chain 546417 chr3 198022430 + 120692401 120698539 L1PA3long 6157 - 8 6151 1893 12 0 1 285 0 1 25 1 2 1591 0 1 4 1 0 538 2 1 118 0 1 1266 0 1 1324 0 1 971 chain 35514 chr3 198022430 + 120708681 120709076 L1PA4 6152 + 4015 4410 75534 395 chain 31617 chr3 198022430 + 120709076 120709424 L1PA4 6152 + 4411 4759 81456 348 chain 98586 chr3 198022430 + 120709446 120710532 L1PA4 6152 + 4759 5845 37129 1086 chain 23258 chr3 198022430 + 120710540 120710810 L1PA4 6152 + 5873 6143 114397 270 chain 22535 chr3 198022430 + 120717230 120717510 L1PA7 6471 - 2 280 117870 9 2 0 269 chain 394621 chr3 198022430 + 120721500 120725969 L1PA4 6152 - 97 4576 10297 12 1 0 4 0 1 736 1 5 503 0 3 2589 0 2 308 0 1 315 chain 259833 chr3 198022430 + 120738059 120741823 L1PBa 3878 + 29 3744 15713 10 2 0 8 4 1 12 38 0 8 4 32 30 83 33 50 1 0 17 6 4 127 4 0 64 3 4 20 18 19 56 1 0 238 3 1 6 0 1 92 0 1 4 2 1 115 0 4 7 0 7 18 0 3 18 7 8 174 0 1 134 1 2 248 8 7 9 5 0 257 2 0 44 0 6 402 6 7 55 0 1 56 0 1 181 5 0 71 1 4 8 2 0 17 0 1 268 9 3 34 8 5 6 1 0 96 0 3 24 3 20 25 7 4 298 12 16 178 1 0 23 2 0 7 chain 6491 chr3 198022430 + 120745831 120745909 MER34A 573 - 495 573 181328 78 chain 147365 chr3 198022430 + 120747763 120749524 L1PA7 6471 + 4696 6458 24985 375 1 0 470 3 2 6 0 1 75 0 3 451 1 0 379 chain 103667 chr3 198022430 + 120751304 120752431 L1PA2 6032 + 4904 6031 35810 744 0 1 369 1 0 13 chain 381040 chr3 198022430 + 120769252 120773596 L1PA4 6152 + 1807 6151 10724 879 2 1 484 1 0 159 0 7 319 14 0 774 0 1 52 0 3 179 6 7 287 0 4 338 2 0 516 1 2 49 0 1 282 chain 508198 chr3 198022430 + 120776830 120783278 L1PA7 6471 - 6 6471 6304 143 0 6 7 17 12 673 0 3 51 0 1 28 1 0 592 2 0 269 0 4 1095 0 2 76 2 0 18 0 1 585 6 10 251 1 2 92 0 2 5 2 0 13 0 4 231 27 0 66 0 1 78 3 2 98 14 5 116 6 0 170 0 1 43 11 12 490 1 13 23 9 11 240 13 19 264 0 1 183 4 6 39 2 3 117 5 7 15 9 24 242 chain 11038 chr3 198022430 + 120788759 120788901 L1PBa 3878 - 1305 1447 156056 142 chain 40234 chr3 198022430 + 120788901 120789386 HERV1_LTRc 486 - 0 486 68975 92 1 2 370 0 1 4 1 0 17 chain 126681 chr3 198022430 + 120796126 120797965 LTR12C 1709 - 0 1709 28894 74 24 22 49 0 101 23 1 3 83 0 1 125 11 4 106 4 2 4 1 0 34 0 2 239 161 0 139 41 0 232 0 2 46 28 4 414 chain 3338 chr3 198022430 + 120796904 120796943 LTR12C 1709 - 712 751 119108 39 chain 10189 chr3 198022430 + 120796943 120797065 LTR12C 1709 - 592 713 88328 5 1 0 116 chain 3424 chr3 198022430 + 120797204 120797245 LTR12C 1709 - 852 892 88328 20 1 0 20 chain 37780 chr3 198022430 + 120797965 120798427 HERV1_LTRc 486 - 23 486 72444 348 0 1 5 1 0 16 1 2 91 chain 40554 chr3 198022430 + 120804201 120804747 L1PA10 4194 + 3619 4159 68505 81 1 2 43 6 0 154 0 3 211 7 4 33 1 0 9 chain 9261 chr3 198022430 + 120805298 120805416 Tigger3c 601 + 345 465 164258 19 0 2 99 chain 97372 chr3 198022430 + 120806911 120807952 L1HS 6032 + 4991 6032 37461 1041 chain 452303 chr3 198022430 + 120809627 120814838 L1PA3long 6157 - 0 5208 8685 849 0 4 490 0 5 1625 0 1 1262 29 15 175 0 1 123 1 0 4 0 1 301 14 16 5 2 0 331 chain 5792 chr3 198022430 + 120823120 120823327 L1PB 1623 + 1415 1586 187235 31 1 0 7 2 1 30 1 0 4 96 65 22 2 0 11 chain 196040 chr3 198022430 + 120826541 120829197 L1PA10 4194 - 78 2743 19495 164 1 0 186 0 1 432 1 0 57 2 1 117 0 1 19 0 1 329 36 3 93 0 8 29 10 15 138 18 27 150 0 4 115 0 4 132 16 19 52 0 4 31 0 3 8 2 1 46 32 33 148 0 1 99 0 1 193 chain 85093 chr3 198022430 + 120853254 120854211 L1PA5 6144 - 1 955 41483 112 1 0 740 2 0 102 chain 4598 chr3 198022430 + 120869209 120869266 MER90a 614 - 413 470 199660 57 chain 27968 chr3 198022430 + 120878469 120878778 AluYk4 311 - 5 311 93115 180 3 0 126 chain 103266 chr3 198022430 + 120881143 120882429 L1PA8 5853 + 4570 5847 35932 86 0 1 349 1 0 3 2 0 168 0 1 386 1 0 44 2 0 22 11 10 35 20 18 47 2 1 19 1 0 87 chain 464987 chr3 198022430 + 120886357 120892170 L1PA7 6471 + 632 6454 8222 149 9 6 102 3 7 8 4 0 181 0 1 297 27 21 443 1 3 5 2 0 141 0 2 633 22 16 192 0 1 360 10 11 286 1 0 31 0 1 15 0 4 326 0 1 369 18 0 106 0 3 316 0 8 187 2 0 347 8 24 169 0 1 196 0 1 12 1 4 273 4 5 289 0 3 84 2 0 182 chain 3644 chr3 198022430 + 120899853 120899893 L1PBa 3878 + 1660 1700 212895 40 chain 8104 chr3 198022430 + 120900201 120900298 L1PBa 3878 + 1659 1756 170467 97 chain 135177 chr3 198022430 + 120903994 120905568 L1PA4 6152 - 858 2429 26978 33 9 1 595 0 1 490 0 1 142 0 3 305 chain 39363 chr3 198022430 + 120905570 120906009 L1PA4 6152 + 5300 5739 70228 439 chain 33049 chr3 198022430 + 120906010 120906400 L1PA4 6152 + 5753 6136 79141 246 7 0 137 chain 267577 chr3 198022430 + 120906467 120912810 L1PA6 6164 + 2077 6146 15315 248 1 0 61 0 8 533 10 743 33 8 5 527 1 0 46 3015 0 81 0 4 978 0 1 495 6 5 197 0 1 103 chain 127653 chr3 198022430 + 120908902 120910371 SVA_B 1603 - 0 1550 28656 6 2 0 109 0 1 175 0 2 295 0 40 83 0 40 799 chain 33720 chr3 198022430 + 120910538 120910941 L1PA5 6144 + 5727 6132 78062 134 0 2 269 chain 326485 chr3 198022430 + 120916348 120920686 L1PA8 5853 - 1 4325 12326 92 1 0 19 2 1 37 32 30 60 0 7 42 1 0 337 0 6 6 17 11 30 1 4 74 2 1 7 0 1 25 0 3 46 0 5 274 6 5 427 9 10 39 0 1 63 9 11 305 0 1 5 1 0 244 1 0 388 14 15 279 3 7 270 14 9 96 0 1 384 9 0 3 22 0 236 0 1 46 0 1 4 0 1 160 15 9 5 0 2 74 1 0 22 5 8 74 chain 117191 chr3 198022430 + 120925998 120927330 L1PA5 6144 + 4802 6134 32061 1332 chain 501207 chr3 198022430 + 120927625 120936487 L1PA7 6471 - 10 6471 6772 92 0 8 49 9 0 170 3 4 8 1 0 11 3 0 288 2466 22 109 0 2 80 1 0 268 0 1 680 0 4 358 8 11 101 5 1 184 7 6 215 5 12 253 6 7 20 2 0 397 0 4 265 5 3 143 5 10 573 6 7 405 10 11 30 1 10 21 0 2 133 0 1 90 0 3 33 12 13 31 0 7 314 9 8 4 0 1 126 0 1 48 0 1 178 0 1 211 0 1 343 2 3 65 chain 183512 chr3 198022430 + 120928281 120930363 L1PA5 6144 - 0 2089 20626 458 1 0 410 1 5 923 0 4 289 chain 36776 chr3 198022430 + 120958306 120958714 L1PA3long 6157 + 5747 6156 73839 77 0 1 331 chain 6502 chr3 198022430 + 120981487 120981599 MLT1A0-int 1658 - 141 252 181227 44 25 24 43 chain 448093 chr3 198022430 + 120981709 120987411 L1PA7 6471 + 844 6469 8809 251 0 1 79 2 1 184 3 4 274 0 9 278 0 1 51 0 1 321 0 1 4 175 10 77 1 0 250 12 7 110 0 7 89 0 2 137 1 2 271 0 2 409 17 11 515 0 3 231 1 0 221 17 31 153 0 53 544 0 1 181 0 3 272 1 0 286 0 3 125 5 0 6 0 5 148 chain 152476 chr3 198022430 + 121019783 121021506 L1PA4 6152 - 1390 3118 24287 393 0 2 858 1 0 8 0 4 463 chain 121415 chr3 198022430 + 121021506 121022879 L1PA4 6152 + 4763 6152 30559 20 0 5 516 0 4 831 0 7 6 chain 32523 chr3 198022430 + 121030363 121031199 L1PA4 6152 + 4313 5149 23272 836 chain 174202 chr3 198022430 + 121031306 121033431 SVA_E 1901 - 0 1901 21572 180 1 0 499 0 1 80 1 0 46 1 0 86 0 1 42 215 0 39 4 0 91 1 0 19 1 0 672 2 0 145 chain 1832 chr3 198022430 + 121032249 121032284 SVA_E 1901 - 943 978 172613 35 chain 11713 chr3 198022430 + 121032320 121032451 SVA_E 1901 - 536 668 153414 60 0 1 71 chain 38825 chr3 198022430 + 121033490 121034488 L1PA4 6152 + 5149 6149 23272 851 0 2 147 chain 21187 chr3 198022430 + 121052737 121053105 THE1B 368 + 0 368 123254 63 1 2 40 34 39 30 30 23 97 5 6 68 chain 29980 chr3 198022430 + 121059181 121059548 L1PA6 6164 - 3 368 84873 7 2 0 67 1 0 260 0 1 30 chain 88657 chr3 198022430 + 121061196 121062187 L1PA3long 6157 - 0 996 40097 223 0 1 625 0 4 143 chain 96511 chr3 198022430 + 121062187 121063262 L1PA3long 6157 + 4087 5162 37686 1075 chain 499243 chr3 198022430 + 121063862 121075671 L1PA6 6164 - 3 6164 6878 164 1 0 4 0 1 165 0 1 452 5681 0 149 7 8 129 0 6 581 0 1 218 1 2 77 0 1 1012 0 1 225 0 1 193 0 1 431 0 1 3 12 0 146 0 2 328 0 5 338 0 1 73 7 8 629 0 17 119 0 1 100 1 0 48 1 3 34 8 9 277 1 2 194 chain 479350 chr3 198022430 + 121064803 121070324 L1PA4 6152 - 1 5522 7750 243 9 11 84 0 1 1135 13 9 62 1 0 167 0 1 473 0 1 1394 0 1 256 1 0 879 4 3 172 0 1 628 chain 34793 chr3 198022430 + 121078183 121078810 L1MA1 4479 - 340 942 76487 32 2 0 29 5 4 38 5 6 42 2 6 18 15 12 5 1 0 24 0 5 59 1 0 20 30 27 47 11 10 16 2 0 24 1 0 83 21 1 94 chain 3787 chr3 198022430 + 121093779 121093844 L1PB4 2604 + 2506 2570 210561 46 8 7 11 chain 77870 chr3 198022430 + 121095186 121096101 L1PA8 5853 - 1103 2023 44448 410 2 0 25 0 7 478 chain 86053 chr3 198022430 + 121096101 121097182 L1PA8 5853 + 4763 5853 41138 245 1 3 22 3 4 24 0 9 17 0 1 135 4 5 47 0 1 201 0 1 86 1 0 46 2 0 70 1 0 13 1 0 51 2 1 12 5 4 92 chain 512138 chr3 198022430 + 121105258 121111383 L1PA6 6164 - 6 6164 5959 261 2 0 578 1 0 10 2 3 118 6 7 322 0 1 99 0 2 336 0 5 331 0 5 210 1 2 99 0 1 65 0 1 401 0 1 23 0 5 87 0 1 365 1 0 926 0 4 247 0 1 200 1 2 44 4 0 76 0 1 245 1 2 139 0 4 361 1 0 48 5 7 38 3 5 52 0 1 178 2 0 5 3 7 48 13 10 87 0 1 80 chain 258593 chr3 198022430 + 121114363 121117430 HERVK9-int 4720 - 690 4684 15775 210 0 1 381 0 2 75 0 2 278 0 1 26 0 4 580 0 1 4 1 0 45 0 924 1326 13 12 26 1 0 8 1 0 66 1 0 4 8 5 13 chain 44418 chr3 198022430 + 121118214 121118723 MER9a2 513 - 0 513 63675 189 0 4 320 chain 55092 chr3 198022430 + 121120164 121120754 L1HS 6032 + 5442 6032 55650 590 chain 6874 chr3 198022430 + 121123682 121123767 MLT1B 390 - 2 87 178404 85 chain 42708 chr3 198022430 + 121161004 121161699 L1MA3 4352 - 0 670 65766 17 14 10 8 1 0 29 1 0 5 2 1 24 2 0 124 57 44 73 5 3 141 5 8 91 4 0 92 chain 18613 chr3 198022430 + 121169218 121169435 L1PA5 6144 - 0 217 131180 217 chain 150947 chr3 198022430 + 121169435 121171258 L1P1 4361 - 2518 4357 24485 414 0 1 816 4 5 457 0 14 132 chain 514466 chr3 198022430 + 121171537 121177242 L1PA3long 6157 + 442 6157 5727 969 0 9 480 1 0 611 0 1 775 6 5 389 0 2 2474 chain 24899 chr3 198022430 + 121214408 121214719 AluY 311 + 0 306 105344 12 1 0 114 4 0 180 chain 23345 chr3 198022430 + 121215028 121215320 AluSg7 307 - 14 306 113960 134 21 21 137 chain 24791 chr3 198022430 + 121216885 121217189 AluSp 311 + 10 310 105937 276 2 0 16 2 0 8 chain 25418 chr3 198022430 + 121229144 121229446 AluY 311 + 2 300 102598 141 0 1 145 5 0 11 chain 4190 chr3 198022430 + 121239543 121239589 MER58A 224 - 132 178 204702 46 chain 30327 chr3 198022430 + 121241139 121241456 AluYb8 318 - 0 317 83851 317 chain 23943 chr3 198022430 + 121243928 121244212 AluY 311 + 22 307 110657 110 0 1 174 chain 3040 chr3 198022430 + 121244735 121244777 Tigger2 2703 - 787 828 224209 12 1 0 29 chain 23102 chr3 198022430 + 121249767 121250039 AluSp 311 + 4 287 115132 49 0 11 223 chain 11438 chr3 198022430 + 121256335 121256489 L1PA16 3655 - 94 244 154540 102 0 1 17 5 0 30 chain 10653 chr3 198022430 + 121269750 121269878 AluSp 311 + 0 125 157591 71 3 0 54 chain 26884 chr3 198022430 + 121274409 121274702 AluYf4 310 - 9 302 96690 293 chain 24168 chr3 198022430 + 121301872 121302166 AluSz6 309 - 5 299 109390 294 chain 87262 chr3 198022430 + 121329950 121330949 LTR5A 1029 - 0 1029 40663 594 0 17 255 0 13 150 chain 15881 chr3 198022430 + 121349262 121349456 MER107 203 - 0 200 138704 24 1 7 169 chain 7442 chr3 198022430 + 121374333 121374427 U4 144 - 25 121 174496 46 0 2 48 chain 25378 chr3 198022430 + 121392866 121393221 L1MA4 2864 - 1770 2120 102795 214 22 17 119 chain 6758 chr3 198022430 + 121393243 121393326 MER2 342 - 127 211 179261 79 0 1 4 chain 29500 chr3 198022430 + 121393668 121393982 AluYb8 318 - 5 318 86638 187 1 0 126 chain 135615 chr3 198022430 + 121407004 121408513 SVA_D 2077 + 6 2077 26908 536 0 40 296 0 437 37 0 49 90 0 37 531 1 0 18 chain 135844 chr3 198022430 + 121460876 121462467 L1PA6 6164 + 4566 6162 26872 482 1 0 267 6 9 288 0 1 298 1 2 79 18 19 151 chain 5157 chr3 198022430 + 121475640 121475708 MLT1A0 366 + 292 366 193478 45 0 2 16 0 4 7 chain 30271 chr3 198022430 + 121494108 121494471 L1PA7 6471 + 6096 6461 84014 4 0 1 278 0 2 7 1 0 73 chain 7293 chr3 198022430 + 121497838 121497921 L1PA5 6144 + 6055 6138 175486 83 chain 456993 chr3 198022430 + 121530444 121536234 L1PA8 5853 + 50 5816 8513 22 2 0 10 1 0 13 52 13 191 6 10 13 33 6 46 1 2 16 0 24 9 1 0 171 0 4 217 0 1 25 10 11 129 1 3 213 0 1 63 0 2 156 7 6 169 10 6 76 0 1 815 0 2 111 0 4 323 0 4 101 0 4 471 5 6 126 1 0 220 0 4 345 2 1 148 14 0 83 0 3 556 1 7 241 0 4 216 0 1 87 1 0 46 2 0 72 1 0 13 7 6 41 2 1 19 1 0 56 chain 517573 chr3 198022430 + 121576528 121582675 L1PA5 6144 - 7 6144 5414 176 5 8 455 0 1 856 0 1 18 1 0 500 5 4 445 0 2 211 0 1 283 1 0 339 0 1 436 0 1 85 2 1 851 0 1 292 9 0 152 20 2 112 0 1 293 0 1 139 5 0 192 1 0 128 0 14 135 chain 9790 chr3 198022430 + 121608714 121608870 MER4A1 472 - 25 184 161652 43 6 8 45 11 12 51 chain 520133 chr3 198022430 + 121621213 121627361 L1PA6 6164 - 4 6163 5141 553 0 16 21 13 4 16 1 0 228 0 4 644 3 4 976 0 2 467 0 1 34 0 1 332 1 2 546 9 0 669 0 9 202 3 4 406 1 0 282 17 15 4 0 1 192 5 1 59 7 6 394 1 2 62 chain 546490 chr3 198022430 + 121651616 121657633 L1PA3long 6157 - 6 6153 1886 3832 0 1 1414 0 128 365 0 1 406 chain 11809 chr3 198022430 + 121662564 121662771 Tigger3a 397 - 71 258 152988 30 0 2 38 33 7 69 10 14 27 chain 6409 chr3 198022430 + 121672969 121673096 MER51B 395 - 243 395 181953 40 6 12 34 22 41 25 chain 10017 chr3 198022430 + 121673195 121673367 MER41A 554 - 8 185 160502 36 8 12 10 19 20 99 chain 7225 chr3 198022430 + 121673899 121673991 L1P5 443 - 161 254 175913 29 1 2 62 chain 27065 chr3 198022430 + 121680763 121681118 THE1A 353 + 0 353 96054 102 10 9 87 1 0 155 chain 4338 chr3 198022430 + 121686436 121686588 L1MA3 4352 + 4210 4352 202735 22 18 14 16 2 0 7 14 13 7 1 0 25 2 1 11 13 12 14 chain 5325 chr3 198022430 + 121690143 121690226 L1MD 993 + 739 817 191770 42 7 2 34 chain 40373 chr3 198022430 + 121691896 121692405 MER75 514 + 0 514 68773 153 0 4 338 1 2 17 chain 25419 chr3 198022430 + 121696320 121696676 THE1B 368 + 0 368 102595 22 9 26 7 4 0 117 1 0 17 0 1 103 1 0 75 chain 7342 chr3 198022430 + 121702331 121702422 MER50 708 - 117 213 175140 48 0 5 43 chain 32367 chr3 198022430 + 121718499 121719011 LTR59 565 + 0 558 80245 38 0 1 102 8 46 19 20 0 39 33 66 137 5 1 38 2 0 71 chain 13024 chr3 198022430 + 121724613 121724774 AluSp 311 + 149 310 148164 161 chain 77852 chr3 198022430 + 121736428 121737373 L1PA7 6471 + 5498 6444 44591 49 0 1 72 2 1 176 0 1 333 0 1 175 1 3 11 4 1 122 chain 26452 chr3 198022430 + 121753517 121753871 THE1B 368 - 0 368 98227 75 1 0 103 0 1 21 2 1 101 7 22 44 chain 557158 chr3 198022430 + 121760758 121766785 L1PA2 6032 - 0 6030 596 11 4 0 764 0 2 4683 0 4 157 0 1 408 chain 120988 chr3 198022430 + 121790583 121791918 L1PA3long 6157 - 8 1340 30696 112 3 0 700 1 0 4 0 1 515 chain 9473 chr3 198022430 + 121812341 121812496 Tigger3a 397 - 139 344 163206 59 2 3 54 19 68 21 chain 32058 chr3 198022430 + 121832074 121832525 L1PB2 3958 - 120 559 80764 63 2 1 21 2 0 68 13 10 58 1 0 77 1 0 81 5 3 17 2 0 40 chain 108412 chr3 198022430 + 121840998 121842508 THE1C-int 1605 + 72 1605 34587 38 0 54 281 79 23 43 0 1 86 0 1 87 21 22 33 4 13 79 11 14 254 10 19 49 0 1 100 3 1 26 1 4 195 1 0 109 chain 41035 chr3 198022430 + 121848669 121849292 L1P4 1494 + 803 1425 67848 135 0 4 72 33 34 35 1 0 99 1 2 155 0 7 6 9 1 37 2 0 22 3 0 13 chain 55269 chr3 198022430 + 121852491 121853105 L1PA3long 6157 - 808 1422 55438 614 chain 73547 chr3 198022430 + 121853105 121853907 L1PA3long 6157 + 5352 6157 46764 31 0 1 766 0 2 5 chain 547489 chr3 198022430 + 121855925 121862075 L1PA4 6152 - 0 6152 1771 145 6 0 1505 8 0 47 0 3 1249 3 1 348 0 1 1172 0 1 444 1 0 174 0 2 26 1 0 58 1 0 396 1 0 24 0 1 399 0 14 142 chain 3538 chr3 198022430 + 121871126 121871168 L1MB7 1623 - 468 510 214739 42 chain 164743 chr3 198022430 + 121882577 121884770 SVA_F 1814 + 10 1814 22688 870 4 0 56 0 1 10 1 15 32 1 0 193 399 0 627 chain 2575 chr3 198022430 + 121883744 121883771 SVA_F 1814 + 1011 1038 213282 27 chain 10268 chr3 198022430 + 121883791 121883989 SVA_F 1814 + 1009 1207 115512 198 chain 8281 chr3 198022430 + 121884032 121884142 SVA_F 1814 + 1028 1138 117990 110 chain 36839 chr3 198022430 + 121888566 121889062 LTR3B_ 500 - 0 485 73750 145 11 9 14 10 0 245 6 7 65 chain 22389 chr3 198022430 + 121889835 121890091 L1PA4 6152 - 0 262 118542 10 0 6 246 chain 58233 chr3 198022430 + 121894238 121895129 L1PA11 4918 + 3759 4629 53846 33 11 12 12 0 1 93 0 4 420 0 3 56 2 1 19 0 2 12 0 1 39 8 6 15 1 0 6 0 1 13 4 0 11 6 1 10 13 9 15 1 0 13 2 0 11 31 21 7 2 0 5 2 0 18 chain 22960 chr3 198022430 + 121898396 121898678 AluY 311 + 20 296 115802 110 1 2 157 7 0 7 chain 126647 chr3 198022430 + 121919848 121921322 SVA_D 2077 - 0 2076 28905 627 3 358 38 0 1 10 0 1 4 1 4 26 6 254 544 0 1 173 3 1 16 5 0 18 chain 95703 chr3 198022430 + 121928096 121929663 L1PA10 4194 + 2956 4161 37897 103 362 0 121 1 4 428 6 7 133 1 0 299 0 3 52 3 1 9 3 0 34 1 0 11 chain 23563 chr3 198022430 + 121928204 121928561 THE1B 368 - 0 368 112775 33 0 12 30 1 0 83 10 12 16 26 25 109 0 1 34 2 0 13 chain 115623 chr3 198022430 + 121944942 121946587 LTR12C 1709 - 0 1709 32581 36 0 2 46 4 3 391 6 23 24 0 1 50 0 47 249 1 0 103 41 0 98 4 5 51 8 10 96 23 14 62 1 2 15 0 43 42 62 64 232 chain 2851 chr3 198022430 + 121945852 121945893 LTR12C 1709 - 816 857 94566 41 chain 7141 chr3 198022430 + 121964407 121964492 L1PA5 6144 + 6059 6144 176462 85 chain 9592 chr3 198022430 + 121979442 121979547 L1PA5 6144 + 6039 6144 162631 105 chain 68764 chr3 198022430 + 122009586 122010341 L1PA4 6152 - 9 764 48915 755 chain 22897 chr3 198022430 + 122028496 122028770 AluSp 311 + 8 299 116120 119 2 1 29 0 18 124 chain 2732 chr3 198022430 + 122038052 122038107 Tigger5 388 + 301 357 229722 23 0 3 6 10 8 16 chain 9089 chr3 198022430 + 122062862 122062966 MSTC 436 - 0 104 165123 104 chain 13871 chr3 198022430 + 122067672 122067878 MER30 238 + 0 238 145006 16 14 22 61 0 1 4 3 25 78 0 1 30 chain 10008 chr3 198022430 + 122094563 122094728 L1PB4 2604 + 2106 2274 160545 62 30 33 73 chain 8639 chr3 198022430 + 122100789 122100892 MLT1B 390 + 287 390 167546 103 chain 34806 chr3 198022430 + 122118945 122119360 L1PA7 6471 + 6035 6452 76463 72 0 1 28 0 1 315 chain 24373 chr3 198022430 + 122119389 122119690 AluSp 311 + 0 298 108234 132 3 0 166 chain 10121 chr3 198022430 + 122132027 122132171 L1PB4 2604 + 1941 2084 159988 5 0 1 29 6 4 104 chain 26036 chr3 198022430 + 122137195 122137490 AluSp 311 - 15 310 99878 295 chain 30427 chr3 198022430 + 122138451 122138769 AluYb8 318 + 0 318 83590 318 chain 77117 chr3 198022430 + 122154411 122155450 MER11B 1079 + 0 1079 44907 36 1 3 7 0 1 51 1 0 154 2 1 43 7 24 127 1 0 90 0 1 4 6 5 227 5 22 83 0 1 103 0 4 68 10 11 13 chain 12913 chr3 198022430 + 122156882 122157209 MSTA 426 + 0 375 148579 119 5 6 18 89 130 27 39 45 30 chain 25374 chr3 198022430 + 122157226 122157522 AluSp 311 - 5 301 102809 296 chain 405431 chr3 198022430 + 122161680 122167599 L1PA6 6164 + 0 6160 9931 258 0 1 56 1 0 233 1 0 19 1 0 127 1074 0 128 17 19 623 8 393 1213 0 1 199 0 3 433 2 0 643 9 917 49 0 5 146 3 16 219 0 6 446 4 0 7 chain 37012 chr3 198022430 + 122169015 122169982 L1PB1 5432 + 4580 5422 73501 15 10 14 20 0 2 86 304 98 271 6 105 29 3 2 9 6 5 45 1 0 15 56 40 10 2 0 24 1 0 14 22 20 18 chain 16221 chr3 198022430 + 122184145 122184372 MER47A 366 - 80 307 137690 81 6 7 37 1 0 102 chain 45546 chr3 198022430 + 122187924 122188508 PABL_A 660 + 0 660 62461 85 6 5 89 0 62 65 0 4 36 0 10 76 2 1 208 0 2 17 chain 8163 chr3 198022430 + 122198787 122198986 L1MC1 2226 + 1854 2037 170157 33 7 1 25 1 0 12 62 55 15 2 0 42 chain 29554 chr3 198022430 + 122210697 122211006 AluYg6 310 - 1 310 86404 309 chain 3600 chr3 198022430 + 122268225 122268271 MIR 256 - 129 175 213639 46 chain 7026 chr3 198022430 + 122300690 122300776 L1MB2 1706 - 1309 1396 177286 19 0 1 67 chain 6922 chr3 198022430 + 122306712 122306901 L1MC1 2226 - 744 929 178015 21 77 75 41 5 3 45 chain 90848 chr3 198022430 + 122356656 122357662 L1PA4 6152 - 9 1015 39340 1006 chain 518268 chr3 198022430 + 122369817 122376627 L1PA6 6164 + 0 6160 5350 51 7 14 502 1 0 257 68 0 387 9 8 458 0 1 269 1 3 367 0 1 211 6 5 248 320 0 47 5 9 162 0 1 318 1 0 50 325 0 423 0 1 106 0 1 660 0 24 172 0 3 553 0 4 362 0 18 464 chain 3680 chr3 198022430 + 122384591 122384631 MER58B 340 + 243 283 212242 40 chain 102598 chr3 198022430 + 122386029 122387231 L1PA6 6164 - 15 1219 36105 805 0 1 132 16 17 249 chain 182340 chr3 198022430 + 122428276 122430912 L1PB2 3958 - 120 2713 20756 52 4 12 25 7 8 59 2 1 61 18 17 49 10 12 4 1 0 85 4 0 15 2 0 58 34 6 8 0 1 4 1 0 51 5 3 46 1 5 41 0 1 187 0 1 49 0 1 50 2 1 164 0 1 43 0 1 147 0 7 73 51 10 28 0 1 139 0 1 168 1 2 379 39 43 73 0 3 39 8 6 22 2 0 309 2 0 7 0 7 7 chain 65379 chr3 198022430 + 122443496 122444278 SVA_A 1864 - 0 933 50387 431 0 4 101 0 74 28 0 3 37 0 3 7 0 36 80 3 0 40 1 35 54 chain 545346 chr3 198022430 + 122451718 122457869 L1PA4 6152 + 0 6151 2029 580 1 0 247 23 6 119 0 6 244 9 5 1225 0 4 1077 1 2 836 0 4 387 0 3 686 0 3 574 0 1 142 chain 23104 chr3 198022430 + 122462143 122462430 AluSp 311 + 9 295 115117 82 0 3 191 4 0 10 chain 157143 chr3 198022430 + 122465463 122467243 SVA_D 2077 + 0 2077 23706 5 1 0 5 0 2 5 1 0 5 1 0 6 1 0 633 0 37 170 0 82 36 1 0 48 1 4 4 0 1 49 0 1 10 0 78 122 0 98 676 chain 172073 chr3 198022430 + 122498376 122500437 SVA_D 2077 - 21 2064 21806 655 9 8 4 0 1 80 0 1 8 10 37 4 0 1 56 48 0 98 0 1 58 12 15 47 0 38 26 2 0 10 2 0 120 40 0 725 1 10 25 6 0 15 chain 3979 chr3 198022430 + 122499202 122499250 SVA_D 2077 - 1054 1103 92369 36 0 1 12 chain 3786 chr3 198022430 + 122527607 122527770 L2a 937 - 552 684 210567 30 91 63 23 5 0 9 0 2 5 chain 13377 chr3 198022430 + 122533514 122533758 MER30 238 + 0 238 146794 13 10 17 64 12 5 8 5 0 7 7 9 65 5 2 48 chain 211783 chr3 198022430 + 122553188 122558979 L1PB3 3668 + 479 3566 18375 155 0 3 248 0 2 88 7 12 216 2 0 6 33 26 78 64 0 65 0 1 5 2 1 8 0 1 53 22 21 56 12 20 11 0 3 51 0 3 25 0 7 16 5 0 47 6 9 38 0 1 63 8 10 67 1 0 219 4 0 46 1 4 18 2637 0 314 13 9 162 1 0 173 1 5 20 0 1 110 1 0 12 3 1 17 0 1 31 5 2 28 4 5 217 1 0 50 0 1 18 0 1 21 6 0 10 2 1 70 0 5 9 21 6 13 2 0 8 2 1 8 0 1 17 2 0 36 chain 47564 chr3 198022430 + 122554948 122555474 L1PA4 6152 - 2107 2634 60796 95 0 1 431 chain 26730 chr3 198022430 + 122555475 122555775 L1PA4 6152 + 4054 4354 97221 300 chain 161912 chr3 198022430 + 122555775 122557563 L1PA4 6152 + 4356 6151 23078 429 0 1 518 0 4 374 0 2 467 chain 35735 chr3 198022430 + 122568818 122569330 MER75 514 - 0 513 75216 16 1 0 93 0 5 285 39 38 37 8 6 33 chain 4290 chr3 198022430 + 122635203 122635253 MER5B 177 + 2 52 203353 50 chain 8791 chr3 198022430 + 122644119 122644226 MER30 238 - 3 111 166694 75 1 0 20 0 2 11 chain 32383 chr3 198022430 + 122651196 122651656 LTR46 455 + 0 455 80217 24 0 2 5 6 5 151 4 2 119 1 0 47 7 8 45 7 3 44 chain 3514 chr3 198022430 + 122674811 122674855 LTR11 50 + 2 46 215155 44 chain 14586 chr3 198022430 + 122702431 122702593 AluYc 301 + 138 301 142640 127 0 1 35 chain 25941 chr3 198022430 + 122766485 122766784 AluSp 311 - 12 311 100245 299 chain 54589 chr3 198022430 + 122896730 122897363 L1PA5 6144 + 5515 6143 55975 538 3 0 79 3 1 10 chain 6201 chr3 198022430 + 122904210 122904358 MLT2D 439 - 258 404 183572 39 60 58 49 chain 4922 chr3 198022430 + 122914226 122914312 L1MC4 1079 - 199 289 196017 59 12 16 15 chain 18316 chr3 198022430 + 122946249 122946463 L1PA7 6471 + 6256 6470 132032 214 chain 17975 chr3 198022430 + 122958151 122958353 L1PA3long 6157 - 0 208 132928 13 0 6 189 chain 3629 chr3 198022430 + 122968762 122968852 MER21C 908 - 778 876 213181 13 28 41 10 5 0 34 chain 8563 chr3 198022430 + 123126631 123126753 L1MB5 1630 + 1357 1476 167941 34 2 0 80 1 0 5 chain 4799 chr3 198022430 + 123135850 123135908 MLT1B 390 + 280 339 197368 12 0 1 46 chain 11208 chr3 198022430 + 123174756 123174948 Tigger2a 444 + 0 212 155392 63 12 13 31 11 32 56 2 0 17 chain 25065 chr3 198022430 + 123175631 123175928 AluSp 311 - 4 301 104480 297 chain 22810 chr3 198022430 + 123180244 123180543 AluY 311 + 11 299 116528 94 20 9 185 chain 25112 chr3 198022430 + 123249255 123249553 AluSc5 308 - 10 308 104216 298 chain 26673 chr3 198022430 + 123260739 123261021 AluYa5 310 + 27 309 97415 282 chain 2934 chr3 198022430 + 123303000 123303032 MIR3 191 - 106 138 226426 32 chain 42519 chr3 198022430 + 123319786 123320332 MLT2A2 560 + 0 555 65994 139 8 7 37 1 0 219 0 11 142 chain 4391 chr3 198022430 + 123383481 123383536 MER3 215 - 0 55 202057 55 chain 23916 chr3 198022430 + 123423468 123423791 AluY 311 + 0 304 110831 126 16 0 147 5 7 15 5 0 9 chain 21883 chr3 198022430 + 123457348 123457708 THE1B 368 + 0 368 120702 103 31 33 33 1 0 23 0 2 5 0 1 14 35 37 87 0 2 28 chain 17853 chr3 198022430 + 123507248 123507455 L1PA3long 6157 - 10 219 133232 89 4 6 114 chain 259197 chr3 198022430 + 123568594 123571538 L1PA5 6144 - 2 2962 15744 157 14 14 1392 1 2 901 0 1 90 0 15 384 1 0 4 chain 93895 chr3 198022430 + 123575628 123576653 L1PA3long 6157 + 5131 6156 38389 1025 chain 126185 chr3 198022430 + 123609122 123610683 THE1B-int 1605 - 15 1605 29042 457 0 1 368 0 2 190 1 2 113 0 25 432 chain 25527 chr3 198022430 + 123610683 123611049 THE1B 368 - 0 368 102108 18 3 0 4 5 0 27 0 10 5 2 0 136 1 0 123 1 6 24 2 0 15 chain 7115 chr3 198022430 + 123611485 123611578 MSTA 426 - 318 426 176644 49 0 15 44 chain 21691 chr3 198022430 + 123621662 123621937 L1PA8 5853 - 0 270 121427 93 1 0 70 1 0 11 2 1 70 2 0 25 chain 13855 chr3 198022430 + 123640494 123640681 MER30 238 - 0 207 145052 39 0 3 64 6 23 78 chain 6414 chr3 198022430 + 123656834 123657167 L1ME1 1623 - 1091 1446 181915 23 114 132 25 54 46 37 42 54 38 chain 26001 chr3 198022430 + 123682678 123682975 AluYk4 311 - 14 311 100012 297 chain 4232 chr3 198022430 + 123687464 123687512 MER53 195 + 132 180 204140 48 chain 34477 chr3 198022430 + 123741006 123741417 L1PA7 6471 - 1 430 76948 113 0 18 24 1 0 176 0 1 97 chain 28221 chr3 198022430 + 123746188 123746485 AluYd8 298 - 1 298 92231 297 chain 8793 chr3 198022430 + 123755203 123755350 L1PA15 4387 - 21 157 166691 10 1 0 27 5 0 14 3 1 44 6 3 37 chain 6139 chr3 198022430 + 123777941 123778097 MER119 576 - 12 168 184092 15 30 0 11 30 60 70 chain 4691 chr3 198022430 + 123780841 123780914 MER5A1 166 + 40 118 198629 43 7 12 23 chain 119032 chr3 198022430 + 123852705 123854359 L1PB1 5432 + 3795 5418 31396 196 1 0 335 8 14 288 3 0 169 7 0 7 10 17 282 1 2 9 3 0 24 1 0 9 16 11 9 2 0 49 8 7 14 1 0 44 1 0 10 7 4 16 9 0 10 22 19 6 2 0 24 1 0 21 2 1 12 1 0 14 chain 6323 chr3 198022430 + 123865118 123865200 MER5C 305 + 76 159 182611 32 0 1 50 chain 12979 chr3 198022430 + 123869231 123869394 L1PA5 6144 - 3 166 148315 6 6 0 135 1 7 15 chain 96809 chr3 198022430 + 123871966 123873028 L1PA3long 6157 - 0 1061 37610 935 2 1 125 chain 94663 chr3 198022430 + 123873028 123874075 L1PA3long 6157 + 4065 5115 38116 535 0 1 221 0 2 291 chain 7527 chr3 198022430 + 123902526 123902644 MLT1B 390 + 267 389 173993 11 2 3 29 6 9 70 chain 13823 chr3 198022430 + 123943132 123943321 MER30 238 - 13 212 145168 30 3 0 71 4 17 81 chain 22177 chr3 198022430 + 123984691 123984974 AluSz 310 + 16 298 119459 6 5 0 110 0 1 143 0 3 19 chain 7278 chr3 198022430 + 123999832 123999913 L1PA6 6164 + 6081 6162 175598 81 chain 7459 chr3 198022430 + 124032767 124032849 L1PA5 6144 - 517 599 174406 82 chain 43377 chr3 198022430 + 124032850 124033344 L1PA5 6144 + 5637 6131 64960 494 chain 114115 chr3 198022430 + 124056315 124057676 L1P3 4156 - 17 1387 33067 24 2 1 7 2 0 350 0 7 229 1 2 687 0 4 59 chain 15122 chr3 198022430 + 124061231 124061426 L1PB4 2604 - 81 274 140985 140 2 0 53 chain 13369 chr3 198022430 + 124068214 124068403 MER30 238 + 19 238 146819 79 0 2 8 4 21 30 1 7 22 0 5 45 chain 24550 chr3 198022430 + 124071570 124071869 L1PA6 6164 + 5864 6160 107254 289 3 0 7 chain 155472 chr3 198022430 + 124085047 124087896 SVA_F 1814 - 0 1814 23926 600 403 0 248 632 18 88 99 0 39 2 42 24 1 41 531 0 1 182 chain 7702 chr3 198022430 + 124085755 124085849 SVA_F 1814 - 533 626 166378 7 1 0 86 chain 16032 chr3 198022430 + 124085864 124086033 SVA_F 1814 - 639 808 138274 169 chain 13768 chr3 198022430 + 124086298 124086478 SVA_F 1814 - 623 802 103527 53 1 0 126 chain 24487 chr3 198022430 + 124086493 124086760 SVA_F 1814 - 639 921 107621 213 0 15 54 chain 14215 chr3 198022430 + 124086777 124086930 SVA_F 1814 - 523 675 131534 17 1 0 135 chain 3002 chr3 198022430 + 124087018 124087053 SVA_F 1814 - 904 939 198308 35 chain 18233 chr3 198022430 + 124111636 124111829 L1PA2 6032 - 3 196 132249 193 chain 3148 chr3 198022430 + 124134554 124134594 MER5A 189 + 119 159 221963 40 chain 3943 chr3 198022430 + 124156759 124156828 MER2 342 - 132 210 208222 34 8 17 27 chain 22993 chr3 198022430 + 124190556 124190831 AluY 311 + 28 300 115651 92 3 0 180 chain 7528 chr3 198022430 + 124239353 124239483 MER1B 344 + 216 339 173985 50 29 22 51 chain 17322 chr3 198022430 + 124253120 124253386 L1PA8 5853 + 5593 5853 134727 15 2 0 52 0 1 5 1 0 12 16 14 46 2 1 21 1 0 93 chain 10167 chr3 198022430 + 124322997 124323138 L1PA3long 6157 - 0 139 159768 5 3 0 78 6 7 49 chain 32869 chr3 198022430 + 124342175 124342647 MLT2A1 477 - 0 477 79424 29 3 0 31 40 32 13 0 7 174 1 0 20 3 0 79 0 13 79 chain 108766 chr3 198022430 + 124363180 124364456 L1PA7 6471 - 6 1280 34492 848 1 0 207 0 2 60 0 1 10 10 6 140 chain 159557 chr3 198022430 + 124468262 124470191 SVA_D 2077 - 21 2022 23390 618 0 3 13 0 49 33 2 0 7 15 2 131 50 0 114 1 0 1 0 51 86 45 5 26 3 1 8 2 0 147 3 0 21 0 80 7 0 2 596 chain 4004 chr3 198022430 + 124469081 124469131 SVA_D 2077 - 652 750 72638 15 1 50 20 1 0 13 chain 3604 chr3 198022430 + 124469333 124469378 SVA_D 2077 - 902 947 72638 45 chain 54089 chr3 198022430 + 124470223 124470980 MER4E1 777 + 17 759 56300 8 2 0 296 8 27 51 1 0 9 0 11 11 0 7 103 12 0 12 38 0 198 0 1 8 chain 27828 chr3 198022430 + 124471424 124471848 LTR7Y 441 - 10 441 93590 187 76 92 46 12 3 103 chain 290406 chr3 198022430 + 124473099 124476601 HERVH-int 3825 - 0 3825 13993 225 0 2 35 0 1 113 18 18 93 8 218 39 9 11 1045 0 10 299 8 35 877 0 1 22 0 3 12 0 2 7 0 1 23 6 8 26 2 1 42 0 37 15 29 0 24 1 0 10 1 0 25 0 56 113 0 1 375 chain 27435 chr3 198022430 + 124476611 124477030 LTR7Y 441 - 10 441 94863 107 0 6 74 68 84 57 9 0 64 1 0 39 chain 4426 chr3 198022430 + 124493796 124493861 MIR 256 - 172 238 201629 15 4 5 46 chain 13807 chr3 198022430 + 124569389 124569547 L1PA3long 6157 + 5996 6155 145241 138 0 1 20 chain 24776 chr3 198022430 + 124580411 124580706 AluSc5 308 - 12 308 106023 17 0 1 278 chain 6310 chr3 198022430 + 124583354 124583455 L1PA16 3655 + 3466 3569 182720 38 10 12 53 chain 14751 chr3 198022430 + 124613668 124613869 MER30 238 - 0 213 142100 48 0 2 60 15 25 78 chain 92800 chr3 198022430 + 124674026 124675806 L1PB3 3668 - 638 2002 38711 27 3 0 12 1 3 31 5 7 125 2 1 105 1 2 33 1 0 4 0 1 14 7 6 121 0 2 123 26 7 26 1 3 34 0 1 52 5 12 15 21 23 24 5 0 102 13 0 98 1 0 36 1 2 51 14 6 84 385 0 171 chain 4073 chr3 198022430 + 124696150 124696197 MSTB1 431 + 384 431 206286 47 chain 29699 chr3 198022430 + 124819575 124819885 AluYb8 318 + 0 310 85832 310 chain 3723 chr3 198022430 + 124831659 124831763 MER5B 177 - 75 177 211588 21 44 42 39 chain 28911 chr3 198022430 + 124847018 124847323 AluYa5 310 - 5 310 89412 305 chain 66987 chr3 198022430 + 124890052 124890768 L1HS 6032 + 5316 6032 49658 716 chain 96764 chr3 198022430 + 124895246 124896329 L1PA4 6152 + 5067 6152 37630 92 0 1 852 0 1 25 0 1 80 1 0 33 chain 30091 chr3 198022430 + 124900163 124900481 AluYb8 318 + 0 318 84518 318 chain 38883 chr3 198022430 + 124954508 124954952 L1PA5 6144 + 5698 6144 70890 432 1 3 11 chain 22278 chr3 198022430 + 124971356 124971629 AluSc5 308 + 14 298 119004 18 5 16 250 chain 13683 chr3 198022430 + 124978308 124978524 Tigger1 2417 - 0 202 145661 103 10 1 62 4 0 10 6 5 21 chain 24447 chr3 198022430 + 124995289 124995566 AluSp 311 - 24 300 107824 185 1 0 91 chain 5279 chr3 198022430 + 125023647 125023726 L1MC4 1079 + 22 99 192213 47 7 5 25 chain 6784 chr3 198022430 + 125029599 125029694 L1MB2 1706 + 1598 1692 179075 13 1 0 81 chain 10814 chr3 198022430 + 125035509 125035703 L1MA1 4479 - 289 467 156918 18 21 10 11 1 0 9 5 4 31 2 0 29 1 0 66 chain 8584 chr3 198022430 + 125042939 125043035 L1PA3long 6157 + 6061 6157 167825 96 chain 3925 chr3 198022430 + 125058700 125058742 5S 121 - 79 121 208482 42 chain 28629 chr3 198022430 + 125059548 125059857 AluYa5 310 + 0 307 90615 132 2 0 175 chain 36844 chr3 198022430 + 125062178 125062737 LTR12F 595 + 0 595 73742 30 5 7 50 5 42 16 2 0 32 42 8 25 5 14 27 0 24 174 0 4 68 4 0 74 chain 3289 chr3 198022430 + 125073217 125073257 LTR54 533 + 425 469 219192 26 0 4 14 chain 27057 chr3 198022430 + 125096154 125096598 MER65A 464 - 0 464 96088 17 0 6 53 24 28 46 6 5 120 2 1 44 3 4 51 7 3 28 14 29 29 chain 10265 chr3 198022430 + 125104076 125104194 MER57A1 433 + 0 118 159307 118 chain 100951 chr3 198022430 + 125106551 125107748 L1PA6 6164 + 4954 6156 36522 5 0 3 817 0 1 226 2 3 147 chain 37633 chr3 198022430 + 125146176 125147009 MER57-int 2662 + 1799 2625 72645 21 17 0 7 23 0 15 67 47 16 3 4 33 15 14 112 0 107 81 1 0 7 0 2 62 9 8 85 22 16 25 2 1 36 63 27 18 2 1 4 1 0 10 5 2 23 1 0 6 8 3 33 chain 30984 chr3 198022430 + 125151866 125152285 MER83 447 - 0 438 82543 10 0 3 15 15 15 180 0 1 43 3 18 153 chain 23660 chr3 198022430 + 125162007 125162292 AluSp 311 - 16 300 112249 167 1 0 117 chain 6866 chr3 198022430 + 125164903 125165005 U13_ 108 + 0 103 178448 79 9 10 14 chain 6435 chr3 198022430 + 125165314 125165391 L1PA16 3655 - 79 156 181741 77 chain 15771 chr3 198022430 + 125173134 125173381 MER1B 344 + 103 344 139050 31 3 0 93 2 0 27 28 27 63 chain 25831 chr3 198022430 + 125177382 125177685 AluYf5 307 + 4 307 100744 128 0 2 126 6 4 43 chain 23596 chr3 198022430 + 125194851 125195132 AluSg7 307 + 21 303 112603 10 0 1 271 chain 7560 chr3 198022430 + 125235822 125235927 HY1 111 + 0 110 173803 32 0 6 5 2 1 66 chain 28037 chr3 198022430 + 125244254 125244696 LTR7B 505 - 14 505 92868 11 2 0 26 14 13 30 0 3 46 1 0 82 0 2 7 33 6 13 3 27 11 0 38 61 0 10 13 0 3 89 chain 20943 chr3 198022430 + 125246668 125246996 THE1A 353 + 0 333 124141 13 2 0 34 12 8 14 0 14 13 1 0 16 0 1 6 16 15 142 2 0 57 chain 4126 chr3 198022430 + 125247088 125247145 HY3 101 - 0 58 205563 28 1 2 28 chain 3985 chr3 198022430 + 125259928 125259974 MER58A 224 - 133 179 207626 46 chain 25605 chr3 198022430 + 125289365 125289722 THE1B 368 + 0 368 101703 44 5 20 105 1 0 23 2 0 114 14 13 49 chain 117922 chr3 198022430 + 125289722 125291283 THE1B-int 1605 + 0 1597 31829 12 4 6 333 1 2 9 0 1 67 1 26 218 0 1 7 1 0 95 46 45 218 3 0 5 0 3 149 0 1 95 0 7 297 chain 25595 chr3 198022430 + 125291291 125291647 THE1B 368 + 0 365 101751 44 0 15 110 1 0 23 3 1 42 2 0 71 7 6 53 chain 28366 chr3 198022430 + 125314685 125314986 AluYa5 310 - 9 310 91707 301 chain 3154 chr3 198022430 + 125323565 125323602 LTR12 884 + 650 687 221862 37 chain 227182 chr3 198022430 + 125323701 125326508 HERV9-int 5642 + 15 2727 17477 437 3 2 131 1 0 16 4 2 111 6 0 132 2 0 15 2 0 48 1 0 148 80 0 43 5 0 7 5 0 52 0 10 1558 chain 10492 chr3 198022430 + 125326518 125326639 LTR12F 595 + 474 595 158280 121 chain 15408 chr3 198022430 + 125333978 125334191 MLT2A2 560 + 0 201 140175 46 13 0 94 0 1 60 chain 208172 chr3 198022430 + 125334891 125337587 HERVL-int 5654 + 2828 5654 18625 44 0 1 9 0 1 28 0 1 4 2 1 117 8 92 514 0 21 243 0 1 61 0 2 28 0 13 327 3 0 130 2 1 238 4 0 304 0 6 162 1 3 27 0 4 7 2 0 6 11 13 176 3 7 9 4 0 55 6 7 92 0 3 40 8 7 21 chain 232086 chr3 198022430 + 125345584 125349506 L1PB1 5432 - 28 3175 17193 13 1 0 21 1 0 24 2 0 13 52 37 15 220 0 43 1 0 17 2 1 52 2 0 10 21 21 23 1 0 11 75 2 393 4 6 81 1 0 123 14 23 212 404 0 51 0 1 4 8 10 90 0 6 109 1 0 55 0 3 128 6 5 67 3 0 447 0 2 21 0 1 151 75 11 60 7 6 126 0 1 66 2 0 67 1 0 280 7 0 238 chain 37806 chr3 198022430 + 125356087 125356543 MER9a1 513 - 0 513 72406 111 0 43 95 0 1 134 0 13 116 chain 5397 chr3 198022430 + 125358579 125358669 L1PA17 2846 + 2605 2693 191016 27 7 6 12 1 0 43 chain 28530 chr3 198022430 + 125360327 125360762 LTR7B 505 - 0 505 91052 25 2 0 5 0 1 20 15 14 78 1 0 82 29 0 28 3 27 12 0 38 60 0 10 34 0 30 41 chain 31362 chr3 198022430 + 125365410 125365805 MER83 447 - 51 447 81884 83 5 6 307 chain 2762 chr3 198022430 + 125371575 125371632 MER53 195 + 1 59 229296 28 14 15 15 chain 16192 chr3 198022430 + 125391066 125391358 LTR12C 1709 + 783 1037 137778 54 0 39 136 77 0 25 chain 2980 chr3 198022430 + 125391298 125391333 LTR12C 1709 + 657 693 193986 14 0 1 21 chain 350444 chr3 198022430 + 125413704 125417754 HERVE-int 4064 + 0 4064 11587 83 0 1 440 0 1 79 0 1 205 0 1 18 0 1 703 1 2 676 3 0 786 2 0 189 0 4 207 0 10 70 1 0 587 chain 354457 chr3 198022430 + 125435928 125439990 HERVE-int 4064 + 0 4064 11492 811 3 0 722 1 2 676 3 0 786 2 0 400 0 10 70 1 0 587 chain 84261 chr3 198022430 + 125449295 125450311 LTR5A 1029 + 0 1029 41795 134 0 13 882 chain 344620 chr3 198022430 + 125458560 125462612 HERVE-int 4064 + 0 4064 11769 604 0 1 208 4 1 719 1 2 676 15 12 552 1 3 413 0 4 202 0 10 70 1 0 127 1 2 458 chain 83223 chr3 198022430 + 125471876 125472904 LTR5A 1029 + 0 1029 42241 147 6 5 69 0 2 806 chain 106717 chr3 198022430 + 125476593 125477985 LTR12C 1709 - 0 1709 35057 82 1 0 69 1 0 146 0 4 180 11 4 6 1 0 100 8 165 99 0 118 271 0 3 81 0 43 40 25 26 10 1 2 260 chain 11834 chr3 198022430 + 125492838 125492998 L1MA8 2339 - 251 408 152887 79 1 0 51 2 0 27 chain 19341 chr3 198022430 + 125495982 125496242 L1PA8 5853 - 12 267 129106 81 1 0 19 2 1 61 1 0 68 7 5 20 chain 4589 chr3 198022430 + 125509318 125509369 MADE1 96 + 45 96 199758 51 chain 83320 chr3 198022430 + 125518093 125519118 LTR5A 1029 - 0 1029 42192 59 1 3 513 0 3 299 6 5 147 chain 31538 chr3 198022430 + 125519549 125520004 HERVK-int 6823 - 1242 1698 81589 54 5 4 9 1 0 13 0 1 4 18 18 5 1 0 198 0 3 105 4 3 4 0 1 34 chain 97369 chr3 198022430 + 125520587 125522346 L1PB1 5432 + 3617 5104 37464 77 1 9 23 1 6 76 0 3 151 5 7 24 3 5 124 0 1 46 1 0 36 0 2 157 0 1 15 0 1 178 4 6 41 1 5 17 1 2 141 385 82 156 2 0 5 0 2 8 3 0 5 10 13 62 chain 9182 chr3 198022430 + 125542506 125542637 LTR2 463 + 241 355 164645 41 17 0 73 chain 71697 chr3 198022430 + 125546355 125547420 MER11A 1151 - 7 1151 47607 8 1 0 141 0 1 6 6 7 11 1 0 49 0 1 37 18 0 21 8 15 10 24 0 104 6 11 32 5 7 6 1 0 133 0 7 93 0 1 147 8 4 58 0 4 76 0 99 55 chain 43262 chr3 198022430 + 125550782 125551332 LTR6B 557 + 0 557 65100 220 2 0 143 0 5 130 0 4 55 chain 187176 chr3 198022430 + 125552746 125556601 HERVS71-int 4705 + 647 4171 20319 8 1 0 5 4 0 12 7 4 5 1 0 17 1 0 4 1 0 18 124 67 21 4 0 154 9 3 282 0 1 354 1 0 374 25 25 119 1 0 182 75 44 15 35 23 16 1 0 8 7 4 11 4 1 7 1 0 7 1 0 4 10 6 11 33 21 8 1 0 6 1 0 11 14 10 42 1 0 9 0 9 32 2 1 17 48 45 17 3 1 9 1 0 29 15 9 11 1 0 15 76 61 6 1 0 7 2 0 9 4 2 21 10 8 35 2 0 10 1 0 7 4 3 13 14 5 22 1 0 20 1 0 4 2 1 6 1 0 19 66 50 14 38 25 9 1 0 11 4 0 41 1 0 12 16 13 15 8 5 11 22 20 8 3 0 6 1 0 12 15 9 19 30 22 29 35 29 16 1 0 17 2 0 57 25 20 7 1 0 20 13 12 28 6 3 52 1 0 3 1 0 21 1 0 30 1 0 13 2 0 6 1 0 12 11 8 5 2 0 5 1 0 29 1 0 7 1 0 4 8 5 25 12 8 20 1 0 7 2 0 36 3 0 23 1 0 16 1 0 3 1 0 4 1 0 26 6 4 10 1 0 21 1 0 39 2 1 11 3 1 14 27 22 42 1 0 8 1 0 8 2 1 12 2 0 20 2 0 7 2 0 22 chain 47801 chr3 198022430 + 125557644 125558202 LTR6B 557 + 0 557 60622 435 1 0 122 chain 31890 chr3 198022430 + 125559742 125560172 MER4A1 472 - 3 433 81026 16 0 4 197 27 21 129 0 2 61 chain 527612 chr3 198022430 + 125568653 125574786 L1PA4 6152 + 0 6135 4436 773 0 1 196 2 1 84 1 0 187 28 8 172 0 5 101 2 1 485 0 1 769 0 4 243 0 1 922 0 2 392 0 4 131 0 2 180 1 0 742 0 3 345 0 3 377 chain 301879 chr3 198022430 + 125582939 125586688 HERVH-int 3825 + 0 3825 13325 123 0 1 209 1 0 142 1 56 39 2 1 9 1 0 12 8 4 8 3 0 14 1 0 12 2 40 27 1 0 20 126 0 39 0 1 22 1 0 82 16 19 218 0 2 764 0 8 189 4 0 25 8 13 303 1 49 233 0 58 1083 chain 27874 chr3 198022430 + 125587938 125588331 LTR7 482 + 1 473 93440 68 8 46 109 0 1 27 3 0 11 1 32 12 0 1 4 1 12 149 chain 37182 chr3 198022430 + 125588961 125589375 L1PA2 6032 + 5616 6032 73259 400 0 2 14 chain 19801 chr3 198022430 + 125599306 125599528 AluY 311 + 15 237 127810 222 chain 63394 chr3 198022430 + 125609301 125610105 LTR5_Hs 974 + 0 974 51281 115 5 13 161 0 1 177 0 1 188 1 0 119 1 162 37 chain 552601 chr3 198022430 + 125610105 125616880 HERVK-int 6823 + 0 6597 1120 5 1 0 17 1 0 20 1 0 20 1 0 38 1 0 18 18 15 17 12 0 306 1 0 204 2 0 28 1 0 19 1 0 312 1 0 437 1 0 372 2 0 7 1 0 3680 4 3 10 1 0 198 1 0 21 1 0 101 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 10 1 0 21 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 14 2 0 27 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 1 1 0 12 5 0 11 5 0 10 chain 59753 chr3 198022430 + 125617635 125618401 LTR5_Hs 974 + 0 775 52959 115 18 26 148 0 1 177 0 1 188 1 0 119 chain 22876 chr3 198022430 + 125622190 125622591 MER66B 489 + 28 448 116210 174 6 5 4 0 1 59 69 90 39 12 10 38 chain 89105 chr3 198022430 + 125622600 125623867 LTR12C 1709 + 0 1709 39964 24 22 29 285 0 43 83 25 23 163 0 278 143 0 47 89 24 0 17 11 4 211 0 101 73 28 27 69 chain 554760 chr3 198022430 + 125655481 125661512 L1PA2 6032 + 1 6029 853 2197 1 0 2221 0 1 848 1 0 756 2 0 5 chain 75422 chr3 198022430 + 125675742 125676638 L1PA7 6471 - 7 929 45807 196 0 4 26 0 17 136 0 1 382 1 2 13 1 0 20 0 1 49 0 3 72 chain 3193 chr3 198022430 + 125689452 125689486 LTR5 62 + 4 38 221050 34 chain 4931 chr3 198022430 + 125702630 125702686 MER53 195 - 0 56 195916 56 chain 367177 chr3 198022430 + 125715101 125720545 L1P2 5180 + 3 5178 11180 147 2 1 73 414 187 35 19 0 11 73 67 38 84 8 72 15 18 79 34 14 30 0 15 46 1 3 80 23 46 63 8 9 4 1 0 625 0 1 178 0 5 230 3 0 239 2 3 148 1 2 95 11 15 196 0 4 102 6 7 291 0 4 14 2 1 23 15 20 224 17 22 24 1 0 173 0 3 176 0 1 88 0 2 20 2 0 196 25 27 291 0 4 376 0 4 204 1 0 49 1 0 38 1 0 4 chain 22342 chr3 198022430 + 125720652 125720913 L1PA6 6164 + 5901 6162 118736 91 0 1 4 1 0 165 chain 20122 chr3 198022430 + 125791421 125791700 L1PA15 4387 + 3973 4243 126765 127 6 4 26 1 0 55 1 0 22 4 0 9 2 1 26 chain 42845 chr3 198022430 + 125810937 125811449 MER9a2 513 + 0 513 65600 316 0 3 137 3 1 56 chain 255252 chr3 198022430 + 125812051 125815212 HERVK9-int 4720 + 6 4720 15971 15 1 0 8 19 7 13 13 9 66 1 0 8 1 0 30 1 0 704 1 0 4 0 1 383 1 0 242 0 924 45 1 0 4 0 1 24 0 10 146 51 690 298 1 2 407 0 2 281 0 1 282 3 0 107 chain 41648 chr3 198022430 + 125815212 125815731 MER9a2 513 + 0 513 67093 20 15 5 430 0 4 54 chain 40754 chr3 198022430 + 125889551 125890429 LTR19B 566 + 0 566 68230 241 10 0 55 315 10 13 1 0 113 0 2 42 7 6 25 28 31 28 chain 34003 chr3 198022430 + 125911615 125912044 MER57A1 433 - 0 433 77612 149 0 2 38 0 1 187 5 6 50 chain 67626 chr3 198022430 + 125912048 125913079 MER57-int 2662 - 3 2549 49396 34 3 0 28 5 100 10 1 2 16 9 6 5 2 0 16 28 22 61 1 0 20 5 0 157 0 1440 53 19 15 249 6 11 100 2 0 201 chain 59910 chr3 198022430 + 125914302 125914965 L1PA5 6144 + 5481 6144 52869 663 chain 35570 chr3 198022430 + 125916645 125917079 MER57A1 433 - 0 433 75451 151 5 3 33 0 1 245 chain 58846 chr3 198022430 + 125939749 125940405 L1PA3long 6157 - 769 1432 53491 139 0 1 290 0 6 227 chain 68679 chr3 198022430 + 125940408 125941164 L1PA3long 6157 + 5389 6157 48950 151 1 2 33 0 10 479 0 1 92 chain 8789 chr3 198022430 + 125943559 125943665 MER47A 366 + 194 300 166716 106 chain 12323 chr3 198022430 + 125956426 125956696 THE1C 375 - 102 373 150923 42 50 51 57 44 46 62 2 0 13 chain 24353 chr3 198022430 + 125958334 125958646 THE1C-int 1605 - 1293 1605 108359 195 1 0 97 3 4 16 chain 21677 chr3 198022430 + 125960642 125961001 THE1B 368 + 0 366 121481 107 8 10 60 67 72 117 chain 21469 chr3 198022430 + 125995874 125996224 MSTA 426 - 21 426 122258 88 7 27 52 3 0 26 4 5 59 11 47 19 15 16 66 chain 25739 chr3 198022430 + 125998751 125999067 Tigger2a 444 + 65 381 101124 316 chain 112011 chr3 198022430 + 126016667 126018238 L1PB2 3958 - 120 1620 33664 62 2 1 22 2 0 74 1 0 62 1 0 77 1 0 88 4 0 12 3 1 64 16 8 4 1 0 41 20 18 39 28 12 47 4 5 178 0 3 96 1 0 431 39 4 151 chain 57072 chr3 198022430 + 126042403 126043153 L1PA8A 6298 - 11 697 54490 120 0 2 65 67 0 60 0 1 438 chain 149433 chr3 198022430 + 126043651 126045249 L1HS 6032 - 0 1598 24697 1598 chain 40509 chr3 198022430 + 126046792 126047464 L1PB1 5432 - 8 645 68580 4 1 0 16 1 0 12 2 1 21 1 0 24 62 46 4 1 0 16 1 0 43 1 0 16 2 1 53 27 20 9 1 0 24 1 0 11 3 0 48 5 6 262 chain 553411 chr3 198022430 + 126050447 126056429 L1PA2 6032 + 0 6029 1017 274 0 47 5708 chain 236549 chr3 198022430 + 126101231 126103902 L1PA6 6164 + 3490 6161 16949 204 1 0 631 0 1 1835 chain 3607 chr3 198022430 + 126123348 126123392 LTR24B 570 - 257 301 213530 44 chain 5563 chr3 198022430 + 126227863 126227933 MER33 330 + 124 194 189451 70 chain 20245 chr3 198022430 + 126304533 126304837 Tigger1 2417 - 30 340 126398 136 1 0 11 1 7 110 22 23 23 chain 484801 chr3 198022430 + 126304855 126310618 L1PA5 6144 - 10 5793 7565 8 1 0 963 0 11 188 0 1 77 0 7 227 6 5 296 0 8 546 6 5 283 0 2 227 0 1 25 0 9 47 1 0 38 1 0 461 1 0 136 0 4 420 0 1 226 6 11 720 19 10 219 24 0 122 0 3 51 40 24 228 0 23 150 chain 24817 chr3 198022430 + 126315235 126315521 AluSg 306 + 10 296 105788 286 chain 63347 chr3 198022430 + 126344012 126344726 L1PA4 6152 - 13 732 51298 326 0 1 262 0 1 56 0 3 70 chain 194699 chr3 198022430 + 126406092 126409074 L1PB1 5432 - 12 2612 19607 16 1 0 11 0 3 19 2 1 24 2 0 10 11 9 19 16 6 6 3 0 16 5 4 39 1 0 16 2 1 50 3 1 12 4 0 9 2 1 13 1 0 20 59 11 163 0 1 305 1 5 121 22 23 338 0 13 167 4 5 10 0 1 70 17 4 125 10 1 15 313 8 257 0 1 456 1 0 172 6 5 17 chain 120963 chr3 198022430 + 126409077 126410558 L1PB1 5432 + 1284 2796 30707 13 0 1 93 5 12 30 0 6 6 5 8 92 0 4 738 0 10 499 chain 6519 chr3 198022430 + 126428729 126428841 MER2B 336 + 223 336 181082 50 21 22 41 chain 6367 chr3 198022430 + 126501849 126502052 L1MA7 2200 - 118 329 182263 26 112 120 65 chain 502766 chr3 198022430 + 126504681 126510447 L1PA4 6152 - 9 5785 6682 104 0 1 29 1 3 5 2 0 699 0 4 1359 1 2 651 1 0 27 0 5 905 3 0 29 0 1 416 0 1 202 0 1 1332 chain 534887 chr3 198022430 + 126519917 126526040 L1PA4 6152 + 3 6140 3607 114 1 0 4 0 1 165 1 2 291 1 0 118 7 0 1204 0 1 132 9 8 581 0 2 538 0 1 375 0 14 135 1 0 1161 0 1 453 0 4 832 chain 30152 chr3 198022430 + 126535557 126535908 L1PA5 6144 - 0 351 84326 351 chain 29125 chr3 198022430 + 126552616 126552921 AluYa8 305 + 0 305 88437 305 chain 4230 chr3 198022430 + 126558574 126558632 Charlie4a 502 + 347 405 204182 37 0 1 4 1 0 16 chain 40486 chr3 198022430 + 126559741 126560188 L1PA2 6032 - 5 454 68611 391 0 2 56 chain 10740 chr3 198022430 + 126574867 126575100 MER30 238 - 0 238 157245 65 0 2 45 9 0 8 4 14 29 56 58 17 chain 9282 chr3 198022430 + 126575100 126575280 LTR32 486 - 272 434 164159 35 6 7 10 26 14 67 7 0 29 chain 21267 chr3 198022430 + 126579196 126579449 L1PA5 6144 + 5891 6144 122966 38 0 1 64 2 1 149 chain 3410 chr3 198022430 + 126693074 126693115 L1MD2 1676 - 180 221 216924 41 chain 4021 chr3 198022430 + 126744659 126744710 L1MB3 1562 + 1253 1306 207061 27 0 2 24 chain 27885 chr3 198022430 + 126763510 126763809 AluYa5 310 - 12 310 93413 172 1 0 126 chain 134051 chr3 198022430 + 126765337 126766884 LTR12C 1709 + 0 1709 27193 699 0 159 214 0 2 37 1 0 6 2 0 107 0 4 481 chain 3085 chr3 198022430 + 126774522 126774557 LTR12C 1709 - 991 1026 223214 35 chain 18085 chr3 198022430 + 126774611 126775024 LTR12C 1709 - 516 777 132633 33 82 0 29 41 0 13 41 10 86 0 2 88 chain 2222 chr3 198022430 + 126774675 126774726 LTR12C 1709 - 623 756 186364 35 8 90 8 chain 6639 chr3 198022430 + 126780112 126780229 L1MC3 1789 - 1653 1768 180170 24 6 8 66 1 0 5 5 2 10 chain 3085 chr3 198022430 + 126794654 126794689 LTR12C 1709 - 991 1026 223213 35 chain 15446 chr3 198022430 + 126794809 126795043 LTR12C 1709 - 578 781 140064 13 37 6 184 chain 5202 chr3 198022430 + 126810240 126810313 MLT1G3 592 - 85 157 193007 22 5 4 46 chain 26484 chr3 198022430 + 126895526 126895897 THE1C 375 - 1 375 98101 24 1 0 93 1 4 122 22 23 108 chain 12971 chr3 198022430 + 126913075 126913275 MER30 238 - 0 238 148347 111 5 0 6 5 26 12 0 4 39 7 25 15 chain 3158 chr3 198022430 + 126991302 126991376 MADE2 80 + 5 80 221763 19 27 28 28 chain 3629 chr3 198022430 + 126993545 126993737 MER52C 1267 + 1005 1061 213182 32 122 0 6 14 0 18 chain 7438 chr3 198022430 + 126995402 126995871 MER52-int 3354 + 152 454 174534 26 127 0 26 46 23 14 146 134 15 1 0 22 4 1 25 1 0 16 chain 6159 chr3 198022430 + 127010030 127010248 L1MC3 1789 - 403 527 183908 8 1 0 37 116 25 8 3 0 8 0 1 37 chain 58444 chr3 198022430 + 127012083 127012745 SVA_B 1603 - 0 824 53718 8 2 0 637 1 165 14 chain 72851 chr3 198022430 + 127027722 127028558 SVA_B 1603 + 687 1603 47095 177 1 0 29 0 83 621 2 0 6 chain 43753 chr3 198022430 + 127121906 127122453 MER41A 554 - 0 554 64502 74 0 9 238 4 0 139 0 1 53 0 1 39 chain 3348 chr3 198022430 + 127123610 127123679 MIR 256 + 13 84 218077 37 17 19 15 chain 12185 chr3 198022430 + 127124368 127124670 MER41G 495 + 2 290 151476 83 10 80 6 1 0 9 88 0 9 2 3 59 9 13 26 chain 73613 chr3 198022430 + 127130495 127131465 LTR5_Hs 974 - 0 974 46723 103 23 21 16 8 15 163 1 0 71 9 0 117 0 1 181 0 1 118 1 0 39 5 13 115 chain 191796 chr3 198022430 + 127152205 127154297 L1PA2 6032 + 3945 6032 19883 6 0 4 793 9 0 1284 chain 5671 chr3 198022430 + 127229257 127229322 MSTC 436 + 0 65 188377 65 chain 25359 chr3 198022430 + 127232089 127232376 AluSq10 312 + 12 299 102895 287 chain 278384 chr3 198022430 + 127233407 127236556 L1PA5 6144 + 2994 6144 14732 182 1 0 1049 1 2 395 0 1 1521 chain 30559 chr3 198022430 + 127311134 127311850 MER48 407 - 0 404 83283 65 328 0 239 0 13 55 0 3 29 chain 30336 chr3 198022430 + 127311210 127311527 AluYb8 318 - 1 318 83821 317 chain 29239 chr3 198022430 + 127330530 127330841 AluYa5 310 - 0 310 87853 184 1 0 126 chain 23226 chr3 198022430 + 127352997 127353280 AluSq2 311 + 11 296 114559 121 0 2 162 chain 25664 chr3 198022430 + 127375301 127375603 AluSg 306 + 4 306 101429 302 chain 43751 chr3 198022430 + 127451800 127452353 MER41A 554 + 0 554 64505 384 3 0 6 5 9 155 chain 25089 chr3 198022430 + 127512413 127512704 AluSq10 312 - 21 312 104360 291 chain 28215 chr3 198022430 + 127513779 127514244 L1PA16 3655 + 3154 3592 92255 46 2 1 82 9 7 145 12 11 13 18 4 38 15 5 11 0 4 57 3 0 14 chain 23997 chr3 198022430 + 127565798 127566080 AluSg7 307 - 15 299 110348 12 0 1 147 0 1 123 chain 30648 chr3 198022430 + 127599299 127599746 Charlie3 2679 - 5 462 83124 20 0 23 10 23 18 47 0 1 122 10 11 25 18 8 172 chain 29496 chr3 198022430 + 127601186 127601496 AluYb9 318 + 8 318 86650 310 chain 37123 chr3 198022430 + 127609418 127609956 LTR10F 562 + 0 562 73347 16 0 1 106 0 84 21 0 3 25 62 0 242 1 2 5 3 0 57 chain 70873 chr3 198022430 + 127612208 127614227 HERVIP10F-int 4088 + 218 1761 47974 13 33 23 12 3 0 7 3 1 13 1 0 19 1 0 8 107 63 4 1 0 12 65 52 14 1 0 16 54 44 18 1 0 31 1 0 33 1 0 5 3 2 5 1 0 5 1 0 10 1 0 10 1 0 17 12 11 4 1 0 10 1 0 28 2 0 6 1 0 43 1 0 4 1 0 4 4 2 33 1 0 7 1 0 59 1 0 5 1 0 26 1 0 11 1 0 7 1 2 15 1 0 4 20 11 4 1 0 16 14 10 7 1 0 30 1 0 40 2 0 13 9 7 13 1 0 5 15 11 24 12 9 18 1 0 14 1 0 24 2 0 17 1 0 131 53 41 11 1 0 12 5 3 26 1 0 29 1 0 44 308 0 19 7 5 18 5 4 59 1 0 32 25 21 97 chain 3985 chr3 198022430 + 127614227 127614273 LTR10F 562 + 516 562 207622 46 chain 14937 chr3 198022430 + 127615174 127615544 MSTB2 466 - 7 440 141516 111 72 111 12 12 10 20 62 88 81 chain 111557 chr3 198022430 + 127624650 127625995 L1PA7 6471 + 5108 6465 33791 87 1 2 356 21 0 157 1 0 400 0 1 64 0 20 120 0 1 47 0 11 91 chain 5671 chr3 198022430 + 127632863 127632990 LTR12 884 + 188 266 188380 62 49 0 16 chain 71062 chr3 198022430 + 127695990 127697021 L1PA15 4387 - 34 1056 47903 24 5 3 10 4 2 16 1 5 18 11 8 4 0 1 41 18 13 23 2 1 54 1 0 24 1 0 92 0 5 76 1 0 20 0 1 21 4 2 62 9 8 6 2 0 39 0 1 442 chain 6140 chr3 198022430 + 127702140 127702253 MSTB1 431 + 31 145 184073 26 13 7 25 7 14 42 chain 178024 chr3 198022430 + 127736783 127740371 MER57-int 2662 + 47 2649 21161 24 44 28 9 1 0 73 10 18 39 320 3 36 6 0 35 2 0 377 4 0 182 0 8 66 1 0 24 328 1 43 0 1 52 0 4 109 1 7 63 0 7 110 0 2 310 18 13 141 316 2 60 13 15 63 0 4 315 0 3 22 60 57 44 25 19 45 1 0 20 32 18 25 6 4 10 4 1 24 1 0 9 5 0 33 3 0 24 chain 10135 chr3 198022430 + 127740428 127740561 MER57A1 433 + 288 429 159925 79 2 7 21 0 3 31 chain 10123 chr3 198022430 + 127793932 127794078 U2 167 - 3 156 159976 22 2 0 3 2 0 8 2 0 63 0 9 23 0 4 21 chain 24925 chr3 198022430 + 127809093 127809375 AluYc 301 + 1 285 105189 119 0 2 163 chain 30434 chr3 198022430 + 127855483 127855950 L1MA3 4352 + 320 1131 83571 76 0 1 172 49 128 27 0 2 47 2 0 56 1 3 16 0 262 21 chain 33118 chr3 198022430 + 127871499 127872074 LTR12F 595 - 0 595 79032 149 0 6 83 128 0 142 0 143 9 8 6 25 0 1 31 chain 5632 chr3 198022430 + 127998166 127998239 MER20 218 - 62 135 188746 17 0 1 50 1 0 5 chain 49136 chr3 198022430 + 128155417 128156371 L1PB1 5432 + 4017 4663 59643 252 0 3 236 343 34 85 2 0 36 chain 22076 chr3 198022430 + 128298110 128298395 AluSq2 311 + 0 294 119902 133 0 2 55 12 19 85 chain 33734 chr3 198022430 + 128371320 128372069 MER41A 554 - 1 447 78038 94 319 0 61 0 1 164 5 20 106 chain 112348 chr3 198022430 + 128372069 128373493 LTR12C 1709 + 0 1702 33575 18 10 24 237 4 0 185 0 1 190 0 278 179 1 0 4 4 2 96 21 14 95 5 7 174 1 0 57 1 0 66 1 0 75 chain 5008 chr3 198022430 + 128379528 128379590 MER4D0 881 - 521 583 195047 62 chain 44954 chr3 198022430 + 128381251 128381752 MER9a1 513 - 0 501 63114 501 chain 26353 chr3 198022430 + 128385715 128386399 MER41C 542 + 142 531 98606 59 7 4 19 7 0 86 1 20 87 304 0 114 chain 7879 chr3 198022430 + 128392533 128392625 7SLRNA 320 - 31 123 171820 92 chain 54595 chr3 198022430 + 128394625 128395254 LTR6A 649 + 0 633 55971 355 0 1 79 0 3 195 chain 21602 chr3 198022430 + 128398915 128399190 AluSp 311 - 36 309 121759 163 8 6 104 chain 82090 chr3 198022430 + 128439206 128440265 MER11C 1089 + 0 1074 42727 23 3 7 220 19 20 45 1 5 368 0 4 45 0 1 33 1 0 52 5 6 234 1 2 9 chain 12234 chr3 198022430 + 128443980 128444191 MER50 708 - 483 708 151286 54 0 1 29 0 1 40 37 49 6 4 0 29 0 4 12 chain 16380 chr3 198022430 + 128461425 128461680 LTR12C 1709 - 600 936 137256 17 15 0 7 2 17 136 14 95 64 chain 25464 chr3 198022430 + 128468381 128468732 THE1B 368 + 0 366 102383 44 6 21 99 7 11 18 4 1 100 1 0 72 chain 30295 chr3 198022430 + 128468734 128469104 THE1B-int 1605 + 0 370 83947 370 chain 24718 chr3 198022430 + 128470612 128470968 THE1B 368 + 0 368 106342 44 11 26 96 3 2 25 4 1 23 0 2 75 1 0 74 chain 24424 chr3 198022430 + 128478556 128478842 AluSp 311 - 16 301 107940 101 1 0 184 chain 116162 chr3 198022430 + 128491573 128492938 SVA_C 1631 + 174 1629 32390 467 0 37 30 54 11 118 0 42 94 0 45 225 0 9 377 chain 16954 chr3 198022430 + 128535090 128535276 SVA_D 2077 - 19 207 135719 23 0 2 163 chain 209607 chr3 198022430 + 128544530 128547318 HERVL-int 5654 - 5 2817 18516 216 4 0 9 1 2 44 0 2 81 25 28 183 0 2 22 4 1 119 39 44 84 1 2 309 2 1 67 1 0 381 27 24 76 9 0 27 1 0 5 2 10 169 1 0 33 0 8 98 0 6 125 13 14 27 7 3 98 0 13 246 0 1 232 chain 3269 chr3 198022430 + 128547644 128548261 LTR14 556 + 0 320 77998 65 0 26 42 323 0 187 chain 22219 chr3 198022430 + 128548276 128548604 LTR7B 505 - 10 420 119266 41 14 13 48 4 5 26 1 0 5 0 9 68 0 2 26 3 27 12 0 38 57 0 10 23 chain 291075 chr3 198022430 + 128549735 128553344 HERVH-int 3825 - 0 3815 13951 225 0 2 36 0 7 217 8 218 648 0 6 162 5 6 582 4 31 32 1 5 422 15 0 445 0 3 10 0 2 10 1 2 25 11 72 22 0 31 24 1 0 10 1 0 38 127 0 442 9 5 26 1 0 49 chain 6194 chr3 198022430 + 128552695 128552764 HERVH-int 3825 - 3293 3362 183630 69 chain 30075 chr3 198022430 + 128553363 128553785 LTR7B 505 - 9 505 84582 42 14 13 48 4 5 23 1 0 46 0 1 38 0 2 26 6 68 66 0 10 108 chain 1224 chr3 198022430 + 128553785 128554016 LTR14 556 + 320 556 77998 72 0 4 42 0 1 117 chain 13087 chr3 198022430 + 128554935 128555120 LTR7B 505 - 10 194 147893 41 14 13 54 0 1 21 1 0 54 chain 15467 chr3 198022430 + 128555121 128555357 LTR7B 505 - 283 505 139997 25 37 13 69 0 10 105 chain 32723 chr3 198022430 + 128560446 128560870 LTR7B 505 - 9 505 79650 42 14 13 76 1 0 85 0 2 24 1 0 4 3 66 69 0 10 105 chain 21388 chr3 198022430 + 128573366 128573835 LTR4 552 - 0 464 122549 72 93 87 12 6 5 35 0 5 57 1 0 83 31 34 23 31 26 25 chain 27751 chr3 198022430 + 128578522 128578993 LTR4 552 - 0 464 93861 128 55 48 97 1 0 89 1 0 7 14 21 39 15 10 25 chain 45358 chr3 198022430 + 128581025 128581585 L1PA5 6144 + 5577 6144 62648 170 0 1 137 1 0 28 0 1 38 0 1 29 9 14 148 chain 3567 chr3 198022430 + 128586632 128586672 MIR 256 - 144 184 214166 40 chain 45644 chr3 198022430 + 128639419 128640038 LTR14B 630 + 0 630 62359 18 0 1 4 1 0 152 45 0 19 0 42 215 0 4 95 0 10 70 chain 44893 chr3 198022430 + 128640210 128640802 HERVK14-int 1672 + 1072 1665 63184 33 1 0 13 0 2 188 2 1 42 0 3 62 1 0 62 2 1 31 2 0 9 1 0 81 0 4 55 1 0 6 chain 50641 chr3 198022430 + 128642970 128643922 LTR14B 630 + 0 630 58545 296 323 0 104 13 14 216 chain 20235 chr3 198022430 + 128656191 128656459 AluYc 301 + 18 283 126425 102 0 2 90 5 1 53 5 4 13 chain 19254 chr3 198022430 + 128658511 128658792 MER1B 344 - 0 302 129368 67 17 24 153 9 23 35 chain 166936 chr3 198022430 + 128672486 128675037 SVA_F 1814 + 10 1814 22405 871 1 0 55 0 1 11 758 14 39 2 0 10 1 0 803 chain 5579 chr3 198022430 + 128673424 128673550 SVA_F 1814 + 1090 1265 165433 30 35 84 61 chain 8399 chr3 198022430 + 128673550 128673775 SVA_F 1814 + 962 1187 86826 225 chain 22835 chr3 198022430 + 128673775 128674034 SVA_F 1814 + 962 1219 91618 49 1 0 166 1 0 10 1 0 27 0 1 4 chain 11790 chr3 198022430 + 128674055 128674181 SVA_F 1814 + 1012 1138 139789 126 chain 40249 chr3 198022430 + 128678660 128679094 LTR7Y 441 + 0 441 68946 320 0 7 114 chain 281634 chr3 198022430 + 128679096 128682569 HERVH-int 3825 + 2 3825 14558 86 2 0 155 0 5 127 0 1 112 3 1 11 37 31 39 65 0 10 1 0 24 1 151 23 2 1 545 4 3 162 0 9 186 5 32 299 0 10 1045 9 11 39 39 249 99 0 1 4 1 0 34 0 9 76 1 4 5 0 2 222 chain 40138 chr3 198022430 + 128683802 128684233 LTR7Y 441 + 0 431 69129 431 chain 3916 chr3 198022430 + 128684848 128684897 MER5B 177 - 64 113 208605 49 chain 29939 chr3 198022430 + 128687732 128688183 LTR7B 505 + 0 495 85004 108 0 10 50 0 1 6 0 38 12 34 27 18 3 2 6 0 2 85 1 0 76 20 19 18 0 3 14 chain 121311 chr3 198022430 + 128697429 128698790 L1PA5 6144 + 4764 6134 30596 434 0 4 95 0 4 81 0 1 27 0 1 474 1 0 249 chain 38238 chr3 198022430 + 128699369 128699870 Tigger1 2417 - 376 875 71789 149 1 3 49 5 0 261 0 1 36 chain 42936 chr3 198022430 + 128703046 128703591 MLT2A2 560 + 0 560 65496 28 0 5 10 1 0 288 1 0 71 0 11 115 4 5 27 chain 31995 chr3 198022430 + 128710233 128710631 MER48 407 + 0 407 80874 30 0 1 4 1 0 130 0 8 7 0 1 226 chain 4258 chr3 198022430 + 128742035 128742150 MER57D 437 - 301 422 203776 19 55 61 41 chain 13563 chr3 198022430 + 128743032 128743701 MSTD 398 - 13 398 146120 57 334 11 19 142 181 117 chain 13810 chr3 198022430 + 128767171 128769022 L1MC1 2226 + 27 2047 145222 36 132 115 38 16 15 60 1413 1606 20 1 0 64 16 11 55 chain 6592 chr3 198022430 + 128770977 128771160 MLT1F1 559 + 298 493 180529 16 6 0 13 64 67 20 0 16 50 2 1 12 chain 31716 chr3 198022430 + 128784615 128785022 MLT2A2 560 + 0 406 81306 180 1 0 200 0 1 4 2 1 20 chain 89214 chr3 198022430 + 128786390 128787686 LTR12C 1709 - 8 1709 39925 76 9 8 75 0 102 212 17 10 108 2 1 47 0 1 62 0 4 4 0 278 108 1 2 68 1 0 62 23 0 6 1 6 73 7 50 35 1 0 4 7 21 17 4 5 131 10 0 125 chain 39099 chr3 198022430 + 128788134 128788729 LTR12 884 + 0 750 70603 25 1 0 30 0 41 103 21 7 16 13 15 73 0 1 29 1 2 30 0 22 35 1 0 52 8 10 56 0 103 18 1 0 82 chain 7161 chr3 198022430 + 128790525 128790609 MER30B 195 - 0 84 176331 84 chain 24534 chr3 198022430 + 128818237 128818528 AluSp 311 - 19 311 107347 28 0 1 263 chain 21963 chr3 198022430 + 128853913 128854181 AluSg 306 + 4 275 120382 169 0 3 99 chain 18870 chr3 198022430 + 128856498 128856736 AluY 311 + 27 261 130456 96 2 0 8 4 5 85 3 0 40 chain 26830 chr3 198022430 + 128872803 128873108 AluYf5 307 + 0 303 96874 266 2 0 37 chain 22422 chr3 198022430 + 128903942 128904249 AluSp 311 - 15 311 118364 18 1 0 6 8 9 210 18 7 46 chain 29207 chr3 198022430 + 128938204 128938623 LTR7B 505 + 0 495 88018 90 0 3 14 0 11 57 17 79 26 0 2 80 1 0 79 14 13 41 chain 3140 chr3 198022430 + 128947758 128947862 LTR33A 529 + 78 184 222185 20 36 37 12 11 12 25 chain 17500 chr3 198022430 + 128960612 128960845 AluSp 311 + 35 276 134266 89 13 18 47 0 3 84 chain 7439 chr3 198022430 + 129010357 129010589 L1MB7 1623 - 91 311 174520 14 3 0 12 42 55 7 8 0 8 1 0 6 11 2 5 1 0 80 8 6 14 1 0 11 chain 5542 chr3 198022430 + 129012130 129012210 L1PB1 5432 + 5347 5423 189637 23 1 0 21 1 0 13 1 0 15 1 0 4 chain 20725 chr3 198022430 + 129046123 129046370 AluSc5 308 + 53 304 124879 95 0 3 16 0 1 136 chain 24084 chr3 198022430 + 129056848 129057192 THE1A 353 + 0 353 109842 107 13 13 18 0 8 167 24 25 15 chain 181608 chr3 198022430 + 129057328 129059695 SVA_D 2077 - 15 2071 20834 323 0 10 248 50 0 80 9 8 4 0 1 66 0 1 277 0 1 5 0 1 52 254 0 38 12 0 30 2 1 31 0 1 229 0 1 618 5 0 5 4 0 25 chain 3045 chr3 198022430 + 129057907 129057949 SVA_D 2077 - 653 694 77014 23 7 5 7 0 1 5 chain 21723 chr3 198022430 + 129058442 129058683 SVA_D 2077 - 738 979 98042 17 0 1 108 1 0 115 chain 26717 chr3 198022430 + 129079887 129080243 THE1A 353 - 0 353 97268 231 17 15 22 2 1 84 chain 4977 chr3 198022430 + 129080254 129080473 THE1A-int 1579 - 7 294 40083 72 0 68 147 chain 176809 chr3 198022430 + 129080543 129083227 SVA_D 2077 - 0 2071 21272 632 0 1 35 95 16 4 0 1 336 1 0 6 32 11 5 1 0 73 549 59 56 40 0 111 0 17 708 chain 4014 chr3 198022430 + 129081210 129081265 SVA_D 2077 - 766 821 77721 55 chain 2800 chr3 198022430 + 129081265 129081305 SVA_D 2077 - 948 988 112265 40 chain 2915 chr3 198022430 + 129081652 129081684 SVA_D 2077 - 905 941 83844 18 1 5 13 chain 7114 chr3 198022430 + 129081763 129081838 SVA_D 2077 - 893 968 138823 75 chain 29484 chr3 198022430 + 129081866 129082236 SVA_F 1814 - 523 1194 86694 17 1 0 184 0 142 66 1 2 25 1 0 28 6 166 41 chain 21228 chr3 198022430 + 129083227 129084161 THE1A-int 1579 - 294 1579 40083 41 0 12 440 0 1 24 6 7 298 0 337 125 chain 24711 chr3 198022430 + 129084161 129084513 THE1A 353 - 0 353 106379 144 0 3 73 24 23 91 4 3 16 chain 14256 chr3 198022430 + 129091792 129091970 L1P4 1494 + 619 799 143693 165 0 2 13 chain 26782 chr3 198022430 + 129091977 129092361 MER57B1 401 - 9 401 97040 80 20 22 15 1 4 93 7 8 83 0 2 85 chain 19157 chr3 198022430 + 129096154 129096396 MER4D0 881 - 363 604 129659 151 1 0 90 chain 3608 chr3 198022430 + 129097287 129097328 MER52C 1267 - 909 950 213516 41 chain 23519 chr3 198022430 + 129108227 129108518 LTR14A 344 + 0 342 113023 64 0 1 104 0 48 57 0 2 66 chain 49653 chr3 198022430 + 129132057 129132622 LTR19B 566 + 1 566 59274 565 chain 12324 chr3 198022430 + 129167842 129167999 LTR9 672 - 515 672 150911 56 0 1 9 3 2 89 chain 11433 chr3 198022430 + 129179401 129179545 L1MB2 1706 - 296 440 154552 144 chain 28770 chr3 198022430 + 129184480 129184781 AluYb8 318 - 14 315 90018 301 chain 85776 chr3 198022430 + 129227359 129228555 HSMAR1 1287 - 0 1249 41234 29 5 7 258 0 1 12 0 23 19 18 22 102 21 22 123 0 1 24 21 22 52 21 22 143 0 4 236 0 11 79 0 4 33 chain 10564 chr3 198022430 + 129255113 129255237 MER85 139 - 0 134 157978 39 0 10 85 chain 17431 chr3 198022430 + 129310200 129310407 7SLRNA 320 + 9 215 134433 18 1 0 188 chain 4550 chr3 198022430 + 129321724 129321782 MIR 256 - 126 184 200208 58 chain 34927 chr3 198022430 + 129329542 129329939 L1PA5 6144 - 12 411 76300 135 0 1 102 0 1 160 chain 23423 chr3 198022430 + 129349831 129350117 AluSq2 311 + 0 294 113514 175 0 1 73 0 7 38 chain 27436 chr3 198022430 + 129353396 129354512 MER101 471 - 0 471 94861 39 645 0 170 13 37 24 52 28 21 9 7 27 4 6 112 chain 5023 chr3 198022430 + 129359686 129359754 Charlie21a 590 - 317 384 194903 21 1 0 46 chain 65311 chr3 198022430 + 129360094 129360905 LTR5_Hs 974 - 0 974 50420 51 23 185 82 1 0 188 0 1 176 1 2 289 chain 3206 chr3 198022430 + 129371482 129371518 MER4D 903 + 236 272 220836 36 chain 16988 chr3 198022430 + 129388279 129388477 AluSp 311 - 14 212 135623 198 chain 34337 chr3 198022430 + 129413312 129413773 MER41A 554 + 72 538 77151 185 12 9 43 1 0 77 0 6 4 0 1 21 0 2 118 chain 60908 chr3 198022430 + 129414641 129415403 MER4E1 777 + 0 769 52383 22 4 3 217 1 0 36 0 1 262 12 20 208 chain 120077 chr3 198022430 + 129415411 129416949 THE1C-int 1605 - 56 1605 31033 56 1 0 29 6 5 140 1 0 19 0 3 844 6 13 360 0 4 76 chain 3073 chr3 198022430 + 129448933 129449001 MER47A 366 - 298 347 223528 32 2 0 9 17 0 8 chain 5626 chr3 198022430 + 129479781 129479886 L1MC2 1988 - 167 284 188812 26 1 0 15 19 32 44 chain 1441 chr3 198022430 + 129559374 129559486 THE1D 372 + 0 112 130662 73 15 15 24 chain 11577 chr3 198022430 + 129559486 129559722 THE1D 372 + 116 368 154001 19 76 93 69 1 0 71 chain 41889 chr3 198022430 + 129559729 129560601 THE1D-int 1627 + 0 559 66775 14 1 3 14 0 2 18 0 1 146 0 1 217 333 15 116 1 0 12 chain 3023 chr3 198022430 + 129560601 129560836 THE1D 372 + 113 372 130662 22 0 4 23 1 2 15 41 60 133 chain 44886 chr3 198022430 + 129569443 129569958 MER9a2 513 - 0 513 63194 68 2 0 445 chain 7862 chr3 198022430 + 129575676 129575767 LTR32 486 - 0 91 171917 91 chain 3805 chr3 198022430 + 129576727 129576795 MIRc 230 - 44 114 210304 38 7 10 7 1 0 15 chain 5705 chr3 198022430 + 129618451 129618538 MADE1 96 + 1 96 188059 39 5 9 9 0 4 34 chain 38848 chr3 198022430 + 129620104 129620591 MER9a3 513 + 0 513 70952 18 0 25 67 0 1 145 1 0 119 1 3 56 0 1 21 2 0 57 chain 370232 chr3 198022430 + 129621270 129625592 HERVK9-int 4720 + 349 4668 11087 1011 10 10 205 0 1 215 13 0 279 0 1 188 0 1 2255 0 1 117 5 11 24 chain 33407 chr3 198022430 + 129625645 129626086 MER9a3 513 + 0 445 78553 18 0 2 80 10 11 66 0 1 239 1 0 17 0 1 10 chain 26117 chr3 198022430 + 129636069 129636521 LTR10E 629 + 0 605 99542 98 3 159 35 9 8 22 1 0 133 53 54 52 9 7 37 chain 3648 chr3 198022430 + 129668095 129668155 LTR16A1 462 - 376 437 212833 35 8 9 17 chain 2973 chr3 198022430 + 129709453 129709488 MIRb 242 - 117 152 225581 35 chain 6318 chr3 198022430 + 129712728 129712816 MER5A 189 + 80 166 182657 4 1 0 58 1 0 24 chain 109095 chr3 198022430 + 129729301 129730697 LTR12C 1709 + 0 1709 34421 259 1 2 38 1 2 37 0 43 83 0 3 183 0 278 184 1 0 4 4 2 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 83168 chr3 198022430 + 129734417 129735430 LTR5A 1029 - 0 1029 42265 226 1 2 295 0 2 357 0 13 134 chain 351242 chr3 198022430 + 129744751 129748811 HERVE-int 4064 - 0 4064 11562 142 6 7 439 1 0 70 0 10 1171 17 14 676 1 2 722 4 1 537 1 0 273 chain 82042 chr3 198022430 + 129757129 129758142 LTR5A 1029 - 0 1029 42745 781 1 4 97 0 13 134 chain 81086 chr3 198022430 + 129776131 129777108 LTR5_Hs 974 + 0 974 43149 50 0 3 365 1 0 40 0 4 362 9 0 150 chain 280813 chr3 198022430 + 129778405 129782129 HERVH-int 3825 + 0 3806 14595 26 0 1 154 10 12 19 4 15 308 10 5 30 1 0 9 71 9 16 70 0 14 1 0 12 30 6 13 26 3 4 1 0 35 0 20 68 1 0 447 15 0 459 4 31 295 0 10 359 1 2 688 9 11 39 8 218 222 4 3 35 0 2 206 chain 25584 chr3 198022430 + 129783408 129783817 LTR7 482 + 0 482 101805 54 9 98 9 1 0 3 49 0 60 3 4 25 1 0 4 0 3 5 0 31 186 chain 31758 chr3 198022430 + 129840183 129840586 MER1A 529 - 86 488 81235 52 1 0 350 chain 88619 chr3 198022430 + 129842182 129843190 LTR5A 1029 - 0 1029 40137 69 0 4 809 0 13 117 0 4 13 chain 72176 chr3 198022430 + 129857558 129858599 MER11C 1089 - 30 1089 47391 21 0 1 117 1 0 56 0 1 118 1 2 5 0 1 38 1 0 4 2 6 85 73 72 146 1 0 65 0 4 54 7 16 148 0 2 73 2 1 23 chain 12849 chr3 198022430 + 129859204 129859750 HERVH-int 3825 - 0 550 14542 240 0 4 135 11 11 160 chain 41176 chr3 198022430 + 129859754 129860251 LTR2C 499 - 0 499 67671 64 6 5 177 1 0 72 2 5 65 0 1 110 chain 336040 chr3 198022430 + 129862901 129866985 HERVE-int 4064 - 4 4064 11997 318 0 1 335 2 0 855 10 11 5 1 0 146 7 10 4 0 1 6 2 0 822 37 16 695 1 2 15 5 6 72 8 0 193 0 2 545 chain 73142 chr3 198022430 + 129868073 129871181 HERVH-int 3825 - 550 3825 14542 48 0 1 775 1 49 303 8 13 25 4 0 73 0 15 11 0 1 1182 1 0 23 0 1 26 1 0 5 91 8 19 1 0 25 8 195 144 1 0 333 chain 527689 chr3 198022430 + 129879285 129885403 L1PA4 6152 - 0 6152 4433 10 1 0 732 0 3 23 1 0 1040 0 1 404 0 1 159 0 1 268 0 1 422 1 0 181 1 0 579 8 7 139 0 2 71 0 3 867 7 6 338 7 34 137 1 2 721 chain 31521 chr3 198022430 + 129893565 129893992 MER4A1 472 + 35 470 81610 65 0 2 124 24 26 197 0 4 17 chain 47974 chr3 198022430 + 129895526 129896078 LTR6B 557 - 0 557 60504 184 0 5 368 chain 118443 chr3 198022430 + 129899228 129900965 HERVS71-int 4705 - 2403 4058 31633 316 11 10 170 0 1 4 1 0 199 1 0 109 13 9 487 2 3 29 9 3 30 7 14 110 4 0 21 130 67 18 1 0 4 1 0 17 13 9 12 4 0 5 1 0 8 chain 44352 chr3 198022430 + 129902405 129902957 LTR6B 557 - 0 557 63755 49 0 2 38 0 2 155 0 1 310 chain 73687 chr3 198022430 + 129906309 129907386 MER11A 1151 + 0 1144 46686 55 0 99 76 1 0 64 4 0 38 0 2 85 24 25 94 0 1 145 5 6 147 24 0 10 8 15 21 18 0 37 0 1 60 13 15 148 chain 8964 chr3 198022430 + 129911125 129911234 LTR2 463 - 113 222 165802 109 chain 4659 chr3 198022430 + 129911262 129911335 L1P1 4361 + 4270 4341 198959 35 1 0 23 2 1 12 chain 34789 chr3 198022430 + 129927833 129928562 L1PB1 5432 - 2 615 76495 4 1 0 4 1 0 18 1 0 12 1 0 20 7 6 21 19 21 12 8 0 6 1 2 8 3 0 15 1 0 45 1 0 14 3 2 51 3 1 9 5 1 14 1 0 10 1 0 17 94 1 100 0 2 5 2 0 156 11 12 24 chain 29135 chr3 198022430 + 129930614 129931068 HERVK-int 6823 + 5125 5581 88387 34 0 1 4 6 5 103 5 8 46 15 16 131 1 0 4 0 1 8 11 10 4 0 1 13 1 0 9 5 4 54 chain 9613 chr3 198022430 + 129931512 129931618 LTR5A 1029 + 0 106 162518 106 chain 6963 chr3 198022430 + 129935096 129935179 L1PA7 6471 + 6387 6470 177728 83 chain 13863 chr3 198022430 + 129942222 129942446 MER30 238 + 36 238 145023 34 0 1 36 38 20 11 2 0 62 3 0 38 chain 3725 chr3 198022430 + 129955330 129955415 HAL1-2a_MD 234 + 176 231 211562 24 12 0 5 18 0 26 chain 215103 chr3 198022430 + 129957016 129959395 L1PA3long 6157 - 5 2387 18157 1700 4 7 675 chain 19669 chr3 198022430 + 129972559 129972768 L1HS 6032 + 5823 6032 128201 209 chain 117832 chr3 198022430 + 129972968 129974259 L1PA3long 6157 - 0 1293 31854 849 0 2 442 chain 196937 chr3 198022430 + 130013669 130015915 L1PA5 6144 + 3894 6144 19429 455 0 4 1627 12 5 14 0 7 138 chain 77860 chr3 198022430 + 130017134 130018200 MER11C 1089 + 0 1069 44583 142 19 5 99 0 9 62 0 4 58 7 6 147 55 54 85 0 1 18 0 4 5 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 33414 chr3 198022430 + 130025720 130026232 L1PB2 3958 + 3343 3838 78540 20 1 0 14 8 1 61 26 22 84 1 0 72 1 0 20 0 1 38 14 13 62 4 2 22 1 0 63 chain 23809 chr3 198022430 + 130034001 130034267 L1PA6 6164 - 715 981 111422 266 chain 57780 chr3 198022430 + 130034267 130034967 L1PA6 6164 + 5457 6162 54093 31 0 2 341 3 5 277 0 1 48 chain 162566 chr3 198022430 + 130053682 130056109 L1MA2 4263 + 1187 4114 22989 110 25 7 11 0 3 41 0 1 46 0 5 41 0 1 124 1 0 166 0 7 6 6 2 121 1 0 12 3 4 4 1 0 72 3 0 48 0 1 15 2 3 51 15 166 66 4 3 106 0 11 157 3 4 42 6 3 4 0 1 29 28 29 65 1 0 17 3 4 27 0 1 66 32 33 134 1 0 436 5 361 17 13 14 31 0 1 4 1 0 37 6 3 97 7 0 47 1 0 9 chain 118766 chr3 198022430 + 130057181 130058970 L1PA11 4918 - 289 2025 31508 18 19 13 5 1 0 8 1 0 5 21 13 13 1 0 15 10 6 11 27 18 16 1 0 14 2 0 67 2 0 8 5 4 61 0 4 121 9 1 76 23 27 40 1 0 157 5 1 72 0 3 129 4 6 8 7 0 12 1 0 4 0 1 82 8 9 165 25 11 134 0 3 375 chain 70412 chr3 198022430 + 130066962 130067838 L1PA8 5853 - 0 875 48209 93 1 0 19 2 1 45 8 7 9 1 0 70 2 0 45 1 0 145 1 0 23 0 2 307 0 2 7 0 1 11 0 4 53 2 0 31 chain 178839 chr3 198022430 + 130069087 130071141 L1PA6 6164 + 4087 6146 21091 556 2 0 673 0 7 823 chain 25389 chr3 198022430 + 130135774 130136115 L1PA8 5853 - 0 334 102741 93 1 0 19 2 1 52 1 0 5 6 5 70 2 0 44 1 0 45 chain 166122 chr3 198022430 + 130152834 130154836 L1PA8A 6298 - 8 2016 22503 138 0 1 171 0 1 490 4 1 792 0 1 4 1 5 295 0 2 107 chain 48005 chr3 198022430 + 130162844 130163402 MER11C 1089 - 527 1089 60488 245 0 4 63 0 1 155 1 0 94 chain 88230 chr3 198022430 + 130164389 130169989 HERVK11-int 2540 - 307 1862 40288 122 8 7 74 13 12 183 1 0 104 26 21 421 21 1 34 26 15 11 1 0 12 17 7 21 3 0 8 7 6 41 1 0 58 12 10 21 59 43 16 3974 56 34 6 5 12 3 0 44 32 9 7 5 0 18 68 51 12 5 0 59 chain 90659 chr3 198022430 + 130171187 130172248 MER11C 1089 - 16 1089 39404 8 0 1 326 0 1 45 0 4 15 0 1 355 0 4 63 0 1 249 chain 34159 chr3 198022430 + 130192383 130192859 LTR3B_ 500 + 0 483 77401 303 0 1 43 5 4 14 1 3 28 8 10 50 10 13 14 chain 159524 chr3 198022430 + 130199895 130201774 L1PA7 6471 - 2 1885 23394 11 0 2 304 0 1 441 1 0 93 3 4 375 0 1 262 0 1 25 1 0 363 chain 42325 chr3 198022430 + 130201774 130202287 L1P2 5180 + 1696 2210 65339 340 4 5 169 chain 54037 chr3 198022430 + 130205109 130205719 L1PA4 6152 - 17 626 56335 227 1 0 382 chain 4155 chr3 198022430 + 130221514 130221580 MLT2D 439 + 298 356 205167 15 0 1 28 9 0 14 chain 6304 chr3 198022430 + 130265607 130265820 LTR12C 1709 - 641 778 182764 54 127 51 32 chain 27232 chr3 198022430 + 130269309 130269651 THE1A 353 - 11 353 95487 342 chain 30236 chr3 198022430 + 130280478 130280794 AluYb8 318 - 1 317 84094 316 chain 20993 chr3 198022430 + 130309161 130309409 L1PA5 6144 - 0 253 123945 11 0 4 128 1 2 108 chain 51386 chr3 198022430 + 130319044 130319717 L1PA8 5853 + 5179 5853 58037 430 2 0 52 0 4 14 1 0 17 2 0 48 1 0 16 3 2 19 0 4 68 chain 15371 chr3 198022430 + 130324600 130324899 THE1B 368 - 62 368 140291 56 82 88 39 14 15 108 chain 499300 chr3 198022430 + 130347578 130352909 L1HS 6032 + 12 6032 6871 62 0 1 21 0 688 5248 chain 3868 chr3 198022430 + 130399138 130399185 MIR 256 + 67 114 209326 47 chain 78015 chr3 198022430 + 130433350 130434658 L1PA8A 6298 - 8 1021 44505 133 1 0 6 7 10 71 0 4 108 1 2 277 313 0 181 5 9 136 4 10 11 0 1 54 chain 3475 chr3 198022430 + 130439562 130439602 L1M3e 1964 + 101 141 215724 40 chain 26963 chr3 198022430 + 130439897 130440198 AluYk4 311 + 0 299 96398 132 2 0 167 chain 26643 chr3 198022430 + 130457909 130458213 AluYk4 311 - 1 305 97502 304 chain 20052 chr3 198022430 + 130492017 130492230 AluYf4 310 - 5 218 126970 213 chain 547502 chr3 198022430 + 130523478 130529657 L1PA4 6152 + 6 6151 1768 454 6 0 116 1 0 820 1 6 916 1 2 172 38 0 315 0 4 1984 0 1 1355 chain 3573 chr3 198022430 + 130533261 130533352 LTR12C 1709 - 880 930 214097 11 41 0 39 chain 37092 chr3 198022430 + 130536824 130537300 LTR10F 562 - 0 562 73395 285 17 16 11 0 87 163 chain 101806 chr3 198022430 + 130551026 130552211 L1P1 4361 + 360 1543 36316 5 2 0 1178 chain 8774 chr3 198022430 + 130575697 130575805 MER85 139 + 1 119 166796 89 0 10 19 chain 43385 chr3 198022430 + 130576586 130577143 MLT2A2 560 - 0 560 64951 35 1 2 32 0 1 16 9 0 56 0 11 96 1 0 311 chain 27558 chr3 198022430 + 130582435 130582788 THE1A 353 + 0 353 94479 35 7 8 66 2 1 243 chain 124404 chr3 198022430 + 130582788 130584339 THE1A-int 1579 + 0 1572 29573 385 0 1 258 1 12 66 0 9 181 0 1 4 1 0 288 1 2 77 12 11 117 0 1 33 0 1 4 9 7 114 chain 81099 chr3 198022430 + 130586143 130587075 SVA_D 2077 + 0 1325 43140 37 1 25 104 0 20 329 1 0 172 0 40 151 0 310 32 1 0 80 0 1 24 chain 98793 chr3 198022430 + 130587120 130588286 SVA_E 1901 + 661 1901 37074 41 2 82 29 34 0 5 17 0 18 0 1 85 0 46 6 1 0 34 0 1 132 2 1 746 1 0 13 chain 2791 chr3 198022430 + 130587192 130587226 SVA_E 1901 + 934 968 83514 34 chain 85485 chr3 198022430 + 130596165 130597138 L1PA5 6144 + 5166 6140 41350 293 0 1 680 chain 17981 chr3 198022430 + 130603536 130603758 L1M1 2793 - 108 328 132912 12 1 0 44 1 0 164 chain 135891 chr3 198022430 + 130628973 130630443 L1PA2 6032 - 1685 3154 26859 1286 1 0 183 chain 152832 chr3 198022430 + 130630443 130632100 L1PA2 6032 + 4365 6029 24249 1509 0 7 148 chain 5879 chr3 198022430 + 130633188 130633296 HY1 111 - 3 111 186373 16 2 0 11 1 2 12 8 10 40 1 0 17 chain 32615 chr3 198022430 + 130664212 130664611 L1PA5 6144 - 0 400 79824 21 0 2 98 1 0 279 chain 10437 chr3 198022430 + 130675877 130676006 MER85 139 + 0 139 158539 89 0 10 40 chain 30231 chr3 198022430 + 130691331 130691676 L1PA3long 6157 - 12 366 84112 135 0 1 31 1 9 178 chain 23245 chr3 198022430 + 130707530 130707814 MER51E 476 + 0 287 114465 6 0 3 278 chain 4046 chr3 198022430 + 130727334 130727503 MER58A 224 + 49 200 206717 30 108 90 31 chain 266424 chr3 198022430 + 130760652 130764029 L1P3 4156 + 3 3371 15374 121 1 2 125 42 48 18 7 6 76 0 2 5 26 8 347 0 1 628 0 3 165 1 2 70 0 2 15 4 0 608 0 1 5 0 15 240 0 2 78 0 1 41 22 3 12 7 0 68 0 1 508 0 4 137 chain 3031 chr3 198022430 + 130764029 130764064 L1PBa 3878 - 1281 1316 224361 35 chain 90225 chr3 198022430 + 130764089 130765374 L1PBa 3878 - 1281 2621 39568 116 0 5 229 10 6 26 43 92 165 7 6 282 5 8 39 13 13 61 12 11 194 0 4 83 chain 144279 chr3 198022430 + 130775738 130777307 L1PA3long 6157 - 5 1574 25433 1569 chain 57009 chr3 198022430 + 130788217 130788831 L1PA2 6032 + 5415 6029 54524 614 chain 4975 chr3 198022430 + 130804602 130805386 L1MC4a 1092 - 82 841 195423 8 7 0 22 1 0 4 304 309 44 362 340 32 chain 8527 chr3 198022430 + 130811666 130811771 U6 107 - 2 107 168152 105 chain 78605 chr3 198022430 + 130815585 130816446 L1PA3long 6157 - 4 866 44221 279 0 1 582 chain 73092 chr3 198022430 + 130816447 130817253 L1PA3long 6157 + 4442 5250 46986 354 0 2 452 chain 11151 chr3 198022430 + 130818898 130819158 L1P4a 3072 - 43 285 155622 33 9 8 9 1 0 3 1 0 12 1 0 10 2 0 9 1 0 19 0 2 8 1 0 7 3 1 39 3 1 19 4 0 22 16 13 19 1 0 8 chain 14379 chr3 198022430 + 130824290 130824659 THE1D 372 - 0 372 143268 14 19 26 61 103 105 26 0 1 48 8 12 5 3 0 19 9 0 23 1 0 17 0 2 13 chain 518729 chr3 198022430 + 130834834 130840957 L1PA5 6144 - 12 6144 5302 131 4 5 1016 9 10 336 5 6 195 3 1 85 1 5 679 2 3 50 0 1 330 0 1 75 1 2 104 0 1 786 8 0 609 0 1 531 9 0 478 0 1 558 0 14 118 chain 2929 chr3 198022430 + 130858847 130858878 MLT1G1 539 + 0 31 226542 31 chain 11801 chr3 198022430 + 130868127 130868372 L1PA15 4387 - 32 278 153040 26 5 0 14 3 1 10 6 17 17 18 15 37 2 1 9 4 0 23 1 0 24 2 0 30 1 0 6 0 9 7 chain 20623 chr3 198022430 + 130871686 130871934 AluSc 308 + 39 284 125211 87 3 0 158 chain 27843 chr3 198022430 + 130887209 130887499 AluYa5 310 - 20 310 93552 290 chain 26536 chr3 198022430 + 130915704 130916038 LTR17 781 - 455 779 97907 17 10 0 307 chain 138922 chr3 198022430 + 130916354 130917950 HERV17-int 4347 - 0 1602 26324 174 0 1 331 0 1 89 1 0 757 0 5 244 chain 24177 chr3 198022430 + 130919386 130919753 LOR1b 457 + 41 457 109333 107 1 0 27 26 74 42 14 15 71 2 3 77 chain 91979 chr3 198022430 + 130921374 130922425 L1PA4 6152 + 5093 6143 38976 208 1 0 842 chain 471584 chr3 198022430 + 130925519 130931367 L1PA6 6164 - 3 5565 7982 95 18 4 69 1 18 436 301 2 203 1 2 484 0 2 927 15 4 128 1 0 167 8 0 96 0 1 274 1 2 57 0 1 286 0 11 566 0 1 307 0 1 153 0 5 628 0 6 626 chain 23980 chr3 198022430 + 130934011 130934273 L1PA5 6144 + 5878 6140 110444 262 chain 15224 chr3 198022430 + 130937568 130937741 L1PA7 6471 - 672 845 140702 173 chain 54267 chr3 198022430 + 130937741 130938411 L1PA7 6471 + 5814 6470 56186 573 39 24 46 1 2 11 chain 13787 chr3 198022430 + 130945190 130945473 L1PB3 3668 + 3361 3614 145312 28 2 1 62 3 4 22 20 4 13 3 0 8 1 0 25 3 1 37 7 3 13 1 0 13 7 4 15 chain 28202 chr3 198022430 + 130964191 130964629 L1PB4 2604 - 254 694 92302 92 7 1 56 0 12 57 5 3 88 6 9 61 17 16 24 4 0 21 chain 25615 chr3 198022430 + 130976561 130977158 L1PB1 5432 + 4860 5430 101646 142 1 0 29 1 10 20 131 117 42 2 1 15 1 0 32 0 3 8 2 1 16 3 0 15 8 0 15 1 0 5 20 16 23 8 7 16 10 8 21 1 0 4 1 0 4 chain 50905 chr3 198022430 + 130981519 130982402 L1PA7 6471 - 11 1491 58365 373 250 847 260 chain 19596 chr3 198022430 + 130981895 130982126 L1PA5 6144 - 12 244 128395 77 0 1 154 chain 333244 chr3 198022430 + 130984384 130988529 L1P3 4156 - 17 4153 12077 24 2 1 9 2 0 106 2 1 49 0 2 412 6 12 132 0 1 166 0 2 63 0 1 31 0 1 59 2 1 7 1 0 180 0 17 208 1 2 14 0 1 522 83 0 401 5 9 403 0 3 263 1 4 133 4 0 6 1 5 26 0 1 539 1 0 71 1 0 37 0 39 172 chain 72426 chr3 198022430 + 130992804 130993940 L1PA3long 6157 - 0 805 47291 662 330 0 117 1 0 26 chain 30043 chr3 198022430 + 130993478 130993796 AluYb8 318 - 0 318 84668 318 chain 39516 chr3 198022430 + 131003344 131003867 MLT2A2 560 + 0 552 70004 12 1 3 34 9 11 123 1 0 80 0 6 131 2 13 16 0 9 114 chain 163710 chr3 198022430 + 131015506 131017308 L1PA3long 6157 - 0 1799 22845 20 1 0 830 1 0 672 1 0 277 chain 8384 chr3 198022430 + 131017308 131017397 L1PA3long 6157 + 4254 4343 168414 89 chain 109167 chr3 198022430 + 131039580 131041190 L1PA16 3655 + 1978 3624 34401 100 0 2 125 29 27 202 0 1 36 4 3 201 2 1 165 4 8 36 11 13 19 2 0 12 0 2 6 10 14 31 0 2 220 7 6 79 3 1 205 0 1 26 46 74 7 1 0 21 chain 558593 chr3 198022430 + 131050321 131056469 L1PA3long 6157 + 6 6157 443 177 4 0 2604 0 1 427 1 0 595 0 1 135 0 1 844 0 1 518 0 4 843 chain 4529 chr3 198022430 + 131077618 131077705 MLT1A0 366 + 24 111 200466 29 1 0 4 22 23 31 chain 12942 chr3 198022430 + 131085415 131085607 L1MA8 2339 - 2021 2234 148457 28 19 40 145 chain 14189 chr3 198022430 + 131108712 131108882 L1PA7 6471 + 6280 6450 143922 170 chain 18771 chr3 198022430 + 131109563 131109765 L1PA2 6032 + 5830 6032 130768 202 chain 280084 chr3 198022430 + 131126841 131129832 L1HS 6032 + 3039 6030 14638 2991 chain 196900 chr3 198022430 + 131132494 131136254 L1PB1 5432 + 2587 5422 19435 242 403 0 177 0 1 164 0 1 154 0 1 63 0 1 136 0 1 46 30 31 82 9 7 34 2 4 63 2 4 152 7 5 6 0 3 59 1 2 47 464 7 86 1 0 292 1 0 72 18 6 83 12 9 73 0 2 101 1 2 297 1 2 9 35 0 4 0 1 19 27 21 9 2 0 52 2 1 12 5 4 44 96 81 8 1 0 22 1 0 12 1 0 18 chain 34322 chr3 198022430 + 131132742 131133114 L1PA2 6032 + 5658 6030 77175 372 chain 32437 chr3 198022430 + 131134387 131134829 MLT2A1 477 + 7 464 80138 162 4 1 215 28 46 33 chain 70058 chr3 198022430 + 131155566 131156555 L1MA3 4352 + 3163 4133 48367 191 0 4 30 6 9 293 10 11 224 0 3 130 6 0 35 34 13 7 3 0 20 chain 6536 chr3 198022430 + 131162827 131162903 LTR12_ 688 - 353 429 180954 76 chain 110804 chr3 198022430 + 131204877 131206300 L1PA6 6164 + 4856 6162 34001 330 29 0 46 102 0 84 0 3 94 0 3 76 0 4 368 0 3 136 3 4 155 chain 28055 chr3 198022430 + 131228066 131228496 LTR7B 505 - 0 505 92808 25 2 0 26 23 22 80 0 41 15 8 7 32 4 23 41 13 22 53 0 10 108 chain 206501 chr3 198022430 + 131229933 131233006 HERVH-int 3825 - 0 3825 18754 101 0 1 79 0 227 119 1 0 283 1 0 40 167 0 116 0 1 52 0 37 67 40 446 70 1 0 85 40 45 253 0 3 8 3 0 77 0 27 31 0 4 127 0 1 93 9 0 185 40 13 47 0 1 4 1 0 98 13 14 74 1 0 4 0 1 102 1 0 111 1 0 8 61 313 41 7 6 77 1 0 333 chain 4198 chr3 198022430 + 131233007 131233052 LTR7B 505 - 460 505 204575 45 chain 43189 chr3 198022430 + 131233132 131233626 MER9a2 513 + 0 494 65187 494 chain 127407 chr3 198022430 + 131233705 131235126 L1PA5 6144 + 4719 6142 28718 572 0 4 456 1 0 151 1 0 240 chain 11794 chr3 198022430 + 131289186 131289312 L1HS 6032 - 7 133 153071 126 chain 20985 chr3 198022430 + 131316052 131316318 L1PA7 6471 + 6210 6468 123970 111 3 0 140 5 0 7 chain 32989 chr3 198022430 + 131323228 131323667 MLT2A1 477 + 0 477 79235 169 1 5 29 0 1 129 6 7 45 4 0 12 5 41 39 chain 9727 chr3 198022430 + 131334594 131334720 AluSp 311 + 150 274 161951 35 2 0 89 chain 3325 chr3 198022430 + 131344563 131344601 MER44D 709 - 118 156 218485 38 chain 63804 chr3 198022430 + 131347280 131347990 L1P1 4361 - 756 1464 51096 408 2 0 300 chain 11849 chr3 198022430 + 131347990 131348141 THE1A 353 - 203 353 152829 40 1 0 110 chain 9193 chr3 198022430 + 131348141 131348272 Tigger1 2417 + 2154 2283 164594 68 0 2 21 10 6 32 chain 8958 chr3 198022430 + 131348797 131348907 MER44D 709 - 235 345 165840 110 chain 53773 chr3 198022430 + 131361751 131362465 THE1C-int 1605 + 0 1597 56490 14 2 1 61 2 0 34 0 54 251 8 829 219 0 11 123 chain 71886 chr3 198022430 + 131381394 131382321 L1PA8 5853 + 4928 5853 47527 81 0 2 11 7 8 181 0 1 122 7 8 222 1 0 46 2 0 63 7 6 9 1 0 56 1 0 16 1 0 93 chain 21887 chr3 198022430 + 131399547 131399973 L1PB1 5432 - 20 417 120677 8 1 0 13 1 0 21 1 0 5 0 1 18 2 0 14 8 5 15 29 17 15 1 0 20 5 8 15 1 0 18 1 0 51 2 0 9 5 1 11 1 0 13 1 0 20 3 0 5 5 6 88 chain 50253 chr3 198022430 + 131419539 131420101 L1PA5 6144 + 5584 6143 58825 4 0 1 540 4 0 14 chain 41667 chr3 198022430 + 131425322 131425949 MER4B 649 + 1 641 67071 84 1 0 112 0 13 29 17 19 108 6 1 44 15 9 87 0 12 43 11 10 61 1 0 8 chain 3138 chr3 198022430 + 131426741 131426774 MIRb 242 + 92 125 222200 33 chain 5459 chr3 198022430 + 131450538 131450626 MER3 215 + 70 184 190420 50 10 36 28 chain 19573 chr3 198022430 + 131462619 131462828 AluY 311 + 94 304 128453 38 0 1 171 chain 26933 chr3 198022430 + 131465492 131466299 L1MA6 2487 - 190 963 96505 6 1 0 14 2 0 36 100 84 26 160 157 35 7 6 66 14 15 12 50 34 112 1 2 46 0 1 8 36 39 13 1 0 61 chain 3554 chr3 198022430 + 131473596 131473838 MER119 576 + 5 278 214477 11 2 0 33 174 207 22 chain 26111 chr3 198022430 + 131475588 131475941 THE1A 353 + 0 353 99574 16 7 8 60 0 1 6 1 0 18 5 4 240 chain 126592 chr3 198022430 + 131475941 131477499 THE1A-int 1579 + 0 1568 28923 17 11 10 326 0 1 623 8 17 322 3 4 248 chain 27049 chr3 198022430 + 131477509 131477863 THE1A 353 + 0 353 96114 109 2 1 243 chain 24766 chr3 198022430 + 131494268 131494634 THE1B 368 + 0 368 106078 63 8 1 105 1 0 29 35 45 125 chain 29580 chr3 198022430 + 131533437 131533747 AluYa5 310 - 0 310 86277 310 chain 235839 chr3 198022430 + 131581562 131584200 L1PA4 6152 - 9 2652 16986 834 1 5 1412 0 2 201 1 0 189 chain 51866 chr3 198022430 + 131594085 131594680 L1PA4 6152 + 5556 6143 57703 107 6 1 395 3 0 84 chain 112892 chr3 198022430 + 131603821 131605896 THE1B-int 1605 + 16 1605 33407 355 512 0 43 0 5 11 0 25 223 43 38 65 34 27 234 8 9 59 0 2 145 1 3 146 22 24 73 0 1 101 chain 26083 chr3 198022430 + 131604387 131604688 L1PA2 6032 - 3 305 99694 144 2 3 155 chain 24551 chr3 198022430 + 131605896 131606272 THE1B 368 + 0 368 107245 15 2 0 29 11 12 51 9 10 52 31 24 100 1 0 75 chain 65753 chr3 198022430 + 131625099 131625826 L1PA3long 6157 - 0 728 50214 148 1 0 79 0 2 499 chain 11173 chr3 198022430 + 131625831 131625960 L1PA3long 6157 + 5277 5406 155549 129 chain 17000 chr3 198022430 + 131640998 131641208 L1PA16 3655 - 136 346 135597 210 chain 23418 chr3 198022430 + 131653259 131653541 L1PA7 6471 - 2 283 113551 13 1 0 268 chain 51719 chr3 198022430 + 131666082 131666739 L1PA8 5853 - 6 656 57808 87 1 0 15 2 1 56 12 10 70 2 0 46 1 0 365 chain 15901 chr3 198022430 + 131666989 131667362 THE1D 372 + 2 372 138654 28 106 102 34 44 45 161 chain 148916 chr3 198022430 + 131670375 131672101 SVA_D 2077 + 4 2077 24769 9 5 0 16 3 7 852 2 271 16 12 13 46 0 78 76 0 1 4 10 9 27 0 1 629 1 0 18 chain 38485 chr3 198022430 + 131673340 131673812 L1PA5 6144 - 2 471 71463 7 4 0 136 1 0 9 0 1 16 1 2 298 chain 29532 chr3 198022430 + 131677833 131678143 AluYa5 310 - 0 310 86515 310 chain 466488 chr3 198022430 + 131682411 131688210 L1PA8 5853 + 50 5847 8173 22 2 0 10 1 0 11 48 15 129 19 22 42 15 27 154 0 1 113 0 4 1793 0 3 444 0 1 371 9 1 104 0 3 67 0 4 379 0 1 186 1 0 6 0 1 173 14 32 46 2 1 95 0 1 15 8 7 16 1 0 159 0 5 7 5 0 488 8 11 32 2 1 176 2 0 154 0 1 176 10 9 39 2 0 71 1 0 9 8 7 49 1 0 16 1 0 87 chain 3655 chr3 198022430 + 131688221 131688264 MADE1 96 - 53 96 212671 43 chain 15458 chr3 198022430 + 131696554 131696887 L1PB1 5432 - 14 318 140028 14 1 0 13 1 0 14 0 3 4 1 0 24 2 0 14 8 5 19 25 13 14 1 0 44 1 0 16 2 1 44 9 7 11 16 11 13 2 0 20 chain 25936 chr3 198022430 + 131711524 131711896 THE1C 375 + 0 375 100272 183 46 50 116 1 0 26 chain 10513 chr3 198022430 + 131716775 131716919 MSTD 398 - 255 398 158189 60 7 6 77 chain 7400 chr3 198022430 + 131721805 131721891 MER5A1 166 + 59 145 174771 86 chain 28670 chr3 198022430 + 131742323 131742630 AluYa5 310 - 3 310 90453 307 chain 479110 chr3 198022430 + 131767707 131773139 L1PA5 6144 - 9 5463 7761 37 2 0 109 1 0 694 6 10 2026 1 3 98 0 1 776 12 0 8 0 16 177 0 2 605 1 13 879 chain 58490 chr3 198022430 + 131775315 131775975 L1PA5 6144 - 0 660 53706 660 chain 78369 chr3 198022430 + 131779912 131781266 L1PA14 3548 - 150 1286 44337 5 1 0 14 3 2 36 4 0 5 2 1 112 1 9 48 1 0 7 7 8 5 1 0 9 1 0 6 2 0 10 10 7 109 2 0 4 2 0 48 2 0 14 2 1 250 2 1 113 0 4 34 219 9 120 4 6 139 chain 35229 chr3 198022430 + 131791622 131792032 L1PA5 6144 + 5733 6144 75885 218 0 1 192 chain 46694 chr3 198022430 + 131799218 131799779 MLT2A2 560 + 0 560 61461 78 0 1 231 2 0 250 chain 19161 chr3 198022430 + 131816069 131816596 L1MA2 4263 + 3819 4218 129643 40 1 0 97 11 9 82 2 0 7 11 6 16 1 0 29 198 83 16 4 2 12 chain 442471 chr3 198022430 + 131818632 131823659 L1PA4 6152 + 0 6143 8981 83 0 1106 996 0 2 132 5 6 5 1 0 34 0 16 8 12 0 1294 2 0 535 0 1 133 0 4 1773 0 1 14 chain 24603 chr3 198022430 + 131827992 131828322 THE1C 375 + 0 355 106981 125 3 0 10 0 4 41 0 1 13 5 27 45 0 1 88 chain 114335 chr3 198022430 + 131839751 131841172 L1PA8A 6298 - 7 1436 32987 96 4 5 5 3 0 462 0 1 231 1 2 218 0 1 162 16 23 223 chain 109320 chr3 198022430 + 131841191 131842534 L1PA8A 6298 + 3461 4806 34363 267 3 4 139 0 1 934 chain 109705 chr3 198022430 + 131846184 131847406 L1PA3long 6157 + 4933 6157 34278 121 6 7 176 0 1 919 chain 538274 chr3 198022430 + 131855753 131862057 L1PA3long 6157 + 39 6149 3109 113 0 1 161 0 4 458 0 128 3453 0 4 645 331 0 1143 chain 29026 chr3 198022430 + 131860597 131860913 AluYa5 310 + 0 310 88869 118 6 0 192 chain 36690 chr3 198022430 + 131870317 131870750 L1PA7 6471 + 6035 6469 73970 102 1 0 176 4 6 150 chain 12862 chr3 198022430 + 131895704 131895903 L1PA15-16 3068 + 656 857 148791 20 10 6 30 3 0 5 3 11 44 0 1 84 chain 26334 chr3 198022430 + 131895903 131896343 L1PA16 3655 + 3186 3619 98682 18 1 0 13 12 24 52 13 11 247 0 12 14 3 0 15 12 0 4 8 0 7 5 0 16 chain 4642 chr3 198022430 + 131899227 131899282 MER91B 187 - 26 81 199159 55 chain 12787 chr3 198022430 + 131911913 131912065 L1PA5 6144 - 6 159 149105 137 1 2 14 chain 3184 chr3 198022430 + 131912071 131912105 U3 216 + 5 39 221219 34 chain 18812 chr3 198022430 + 131928113 131928341 L1PA7 6471 + 6242 6469 130641 210 1 0 17 chain 20415 chr3 198022430 + 131943679 131943957 Tigger3b 1229 + 291 569 125852 28 0 3 7 7 1 208 0 4 20 1 0 7 chain 6576 chr3 198022430 + 131947943 131948015 tRNA-Cys-TGY 72 - 0 72 180652 72 chain 6912 chr3 198022430 + 131950641 131950713 tRNA-Cys-TGY 72 - 0 72 178102 72 chain 11727 chr3 198022430 + 131990351 131990839 L1MA3 4352 - 54 231 153357 10 1 0 6 1 0 24 2 0 22 4 0 30 303 0 85 chain 135921 chr3 198022430 + 131993373 131994894 L1PA4 6152 - 1 1517 26852 1468 5 0 48 chain 7374 chr3 198022430 + 131995704 131995796 LTR8 732 - 585 676 174945 11 1 0 80 chain 17928 chr3 198022430 + 131995810 131996032 LTR10E 629 + 0 281 133036 18 1 0 138 0 60 65 chain 30427 chr3 198022430 + 131996142 131996460 AluYb8 318 + 0 318 83589 318 chain 4748 chr3 198022430 + 131999460 131999522 U13_ 108 + 0 62 197935 62 chain 55175 chr3 198022430 + 132000018 132000759 MER4E1 777 + 0 769 55602 13 2 5 103 1 5 190 0 2 218 14 15 103 13 31 84 chain 29452 chr3 198022430 + 132005043 132005542 MER41B 635 + 0 595 86833 119 16 17 16 8 92 10 2 0 30 5 8 5 3 0 146 19 23 83 15 24 22 chain 38173 chr3 198022430 + 132013816 132014278 LTR2 463 + 0 463 71879 146 1 2 315 chain 37048 chr3 198022430 + 132014914 132015374 LTR2 463 - 0 461 73461 88 14 15 358 chain 280269 chr3 198022430 + 132017042 132020458 Harlequin-int 5206 - 1660 5081 14630 66 2 1 655 3 4 252 0 1 432 0 11 336 1 0 494 3 2 16 0 1 100 0 1 625 0 2 24 0 1 39 10 3 39 5 15 52 1 0 4 15 3 61 1 0 163 0 1 17 chain 35088 chr3 198022430 + 132022063 132022525 LTR2 463 - 0 463 76065 88 15 16 152 1 0 4 13 14 189 chain 420860 chr3 198022430 + 132023714 132028794 Harlequin-int 5206 + 125 5206 9514 10 3 0 8 2 0 151 3 2 187 3 0 38 9 1 4 0 1 155 1 0 189 1 0 336 0 3 101 0 4 239 0 1 104 0 3 513 2 0 114 2 0 278 2 0 129 0 1 37 0 1 512 3 2 40 16 9 6 1 0 928 3 0 102 3 17 152 11 12 100 10 19 572 chain 39939 chr3 198022430 + 132028795 132029258 LTR2 463 + 0 463 69409 463 chain 9418 chr3 198022430 + 132044987 132045109 MER20 218 + 94 217 163471 61 1 2 60 chain 24211 chr3 198022430 + 132078074 132078350 AluY 311 + 0 281 109146 131 0 5 145 chain 551306 chr3 198022430 + 132090076 132096105 L1PA2 6032 - 1 6032 1275 2629 0 1 3034 4 0 177 0 4 71 0 1 114 chain 19530 chr3 198022430 + 132102663 132102971 L1PA16 3655 + 3337 3619 128571 49 9 7 128 0 1 57 3 0 7 27 10 7 5 0 16 chain 54488 chr3 198022430 + 132103246 132103855 L1PA4 6152 + 5455 6065 56035 362 1 2 246 chain 7005 chr3 198022430 + 132103858 132103936 L1PA4 6152 + 6065 6143 177434 78 chain 18157 chr3 198022430 + 132104787 132105026 AluSc5 308 + 64 303 132443 67 3 0 96 7 9 28 1 2 37 chain 15314 chr3 198022430 + 132111544 132111809 THE1D 372 - 25 372 140446 106 21 37 13 5 0 15 4 10 55 1 0 6 7 73 32 chain 78463 chr3 198022430 + 132115091 132116212 LTR12D 1347 + 0 1347 44287 298 2 38 200 42 32 131 19 12 119 42 45 59 0 200 149 0 4 60 chain 23028 chr3 198022430 + 132122541 132122923 THE1D 372 + 0 372 115498 15 0 2 15 1 0 16 18 0 26 17 18 84 0 3 7 15 14 25 1 0 46 0 5 96 chain 35891 chr3 198022430 + 132129791 132130295 L1PA8 5853 - 0 499 75022 92 2 1 17 1 0 33 38 36 15 0 2 48 2 0 45 1 0 210 chain 11298 chr3 198022430 + 132162973 132163135 MER1B 344 + 173 339 155063 47 4 0 47 6 14 58 chain 166434 chr3 198022430 + 132188826 132191070 SVA_F 1814 - 0 1805 22467 627 1 0 221 3 18 60 452 0 672 1 0 207 chain 5057 chr3 198022430 + 132189745 132189819 SVA_F 1814 - 934 1050 194565 25 0 39 39 0 3 10 chain 8233 chr3 198022430 + 132189994 132190179 SVA_F 1814 - 540 725 131971 136 1 0 16 0 1 32 chain 10428 chr3 198022430 + 132265903 132266032 MER85 139 - 0 139 158568 40 0 10 89 chain 76004 chr3 198022430 + 132290497 132291523 L1PA13 3608 + 2463 3497 45476 134 0 4 68 17 8 297 0 2 88 0 21 43 1 0 31 1 0 114 2 0 61 1 0 54 1 0 8 2 0 45 11 7 18 1 0 21 0 3 7 chain 12251 chr3 198022430 + 132291808 132292019 L1PA8 5853 - 38 245 151201 41 15 14 19 2 1 40 0 1 9 10 8 52 1 0 22 chain 8018 chr3 198022430 + 132292125 132292316 MER33 330 + 32 231 170944 23 74 79 45 0 3 49 chain 150769 chr3 198022430 + 132301815 132303555 L1P2 5180 - 1445 3177 24506 487 0 1 485 9 0 759 chain 158984 chr3 198022430 + 132303555 132305337 L1PA4 6152 + 4356 6143 23466 407 0 1 371 6 10 998 chain 21212 chr3 198022430 + 132305665 132305964 AluSq2 311 + 11 302 123172 186 31 27 66 4 0 12 chain 23422 chr3 198022430 + 132309806 132310210 L1PA14 3548 - 95 483 113530 39 1 0 16 1 0 11 1 0 7 5 3 24 13 9 13 4 3 107 1 0 84 9 6 13 12 8 14 0 2 29 chain 7858 chr3 198022430 + 132323094 132323203 MER44A 345 + 147 259 171950 36 1 4 72 chain 472673 chr3 198022430 + 132325415 132334662 L1PA7 6471 + 741 6467 7953 475 1 3 21 0 4 14 0 3 135 0 1 656 0 4 118 1 0 85 2 0 375 16 0 60 1 0 125 0 1 152 0 1 436 1 2 135 5 9 20 1 6 98 0 1 239 0 3 350 0 3 110 3232 0 171 315 0 398 2 1 1181 1 0 228 0 14 78 0 1 9 chain 285201 chr3 198022430 + 132329051 132332231 L1PA4 6152 + 2968 6152 14342 118 0 4 3062 chain 2517 chr3 198022430 + 132340096 132340141 tRNA-Met_ 45 + 0 44 232934 19 8 7 18 chain 105031 chr3 198022430 + 132351332 132352502 L1PA4 6152 - 1411 2586 35446 389 0 4 210 0 1 571 chain 123624 chr3 198022430 + 132352502 132353900 L1PA4 6152 + 4741 6143 29834 480 16 18 594 0 1 168 0 1 140 chain 82752 chr3 198022430 + 132367640 132368636 LTR5B 1012 + 0 1012 42438 8 0 4 122 0 14 92 5 1 762 0 2 7 chain 28235 chr3 198022430 + 132370513 132370899 THE1B-int 1605 + 1208 1605 92176 51 0 1 37 8 13 37 2 1 171 0 5 18 2 3 60 chain 20323 chr3 198022430 + 132370899 132371270 THE1B 368 + 0 366 126172 63 30 23 83 73 75 122 chain 17473 chr3 198022430 + 132406881 132407168 Tigger4b 360 + 1 297 134321 119 10 0 12 32 47 40 5 9 69 chain 4702 chr3 198022430 + 132435021 132435099 MER2 342 - 131 210 198499 17 8 9 53 chain 17293 chr3 198022430 + 132442889 132443097 AluY 311 + 85 296 134799 140 0 4 52 2 1 14 chain 533065 chr3 198022430 + 132459993 132466152 L1PA6 6164 - 2 6164 3838 711 0 1 1081 0 4 553 6 1 765 3 1 608 0 1 98 5 6 154 1 0 261 1 0 1142 0 5 770 chain 3616 chr3 198022430 + 132468338 132468392 MLT1B 390 + 281 350 213404 17 1 0 23 0 16 13 chain 23036 chr3 198022430 + 132470935 132471211 AluSc 308 + 7 283 115467 276 chain 544223 chr3 198022430 + 132479500 132485496 L1PA2 6032 - 4 6030 2186 855 0 1 968 0 13 1727 0 1 576 2 5 600 0 9 231 0 3 783 5 4 178 1 2 70 chain 38914 chr3 198022430 + 132487266 132487856 L1PA13 3608 - 120 699 70847 23 1 0 17 2 0 4 2 0 48 3 1 4 1 0 29 1 0 26 1 0 61 3 1 44 6 8 59 4 3 32 1 0 62 1 0 46 0 2 109 chain 16660 chr3 198022430 + 132500139 132500399 L1PA8 5853 + 5598 5853 136509 10 2 0 6 0 4 57 17 13 52 2 1 16 7 5 91 chain 4265 chr3 198022430 + 132508323 132508376 MLT1A 405 + 322 373 203690 32 2 0 19 chain 186886 chr3 198022430 + 132514555 132516623 L1PA4 6152 - 1 2069 20342 2068 chain 157702 chr3 198022430 + 132516623 132518407 L1PA4 6152 + 2295 4082 23612 216 0 4 656 7 6 905 chain 266850 chr3 198022430 + 132525932 132528777 L1HS 6032 - 0 2845 15344 2845 chain 6456 chr3 198022430 + 132528777 132528846 L1HS 6032 + 3114 3183 180845 69 chain 9502 chr3 198022430 + 132529875 132530049 L1MB3 1562 - 299 436 163064 62 1 0 9 42 6 60 chain 5235 chr3 198022430 + 132530230 132530386 Ricksha_c 1012 + 303 497 192681 22 83 121 51 chain 70415 chr3 198022430 + 132544459 132545672 L1PB1 5432 - 5 1089 48206 5 2 0 18 1 0 12 1 0 22 1 0 24 24 7 7 1 0 5 3 1 18 29 18 10 2 1 42 1 0 16 2 1 51 3 1 9 5 1 14 1 0 10 1 0 20 107 19 231 0 3 63 7 0 176 0 1 121 0 11 9 12 5 95 6 11 26 chain 30573 chr3 198022430 + 132545672 132546069 L1PB1 5432 + 3939 4343 82990 71 2 12 78 7 4 239 chain 16149 chr3 198022430 + 132550565 132550744 L1PA3long 6157 + 5978 6157 137903 179 chain 45253 chr3 198022430 + 132555524 132556458 PRIMA4_LTR 623 + 0 623 62766 87 0 1 91 1 0 9 4 0 39 320 0 27 3 4 71 1 0 206 5 18 70 chain 15368 chr3 198022430 + 132561250 132561431 L1PA6 6164 - 7 188 140296 181 chain 26263 chr3 198022430 + 132565526 132565880 MLT2A1 477 - 126 477 98965 7 7 0 140 0 1 23 0 1 9 6 3 22 0 1 125 0 4 15 chain 14928 chr3 198022430 + 132587366 132587601 MLT2A1 477 + 0 234 141551 97 2 1 22 11 12 37 4 1 11 0 1 22 1 2 28 chain 40543 chr3 198022430 + 132597351 132597811 L1PA3long 6157 - 0 460 68528 20 1 0 339 1 2 99 chain 9175 chr3 198022430 + 132607205 132607337 L1PA7 6471 + 6184 6310 164680 54 10 4 68 chain 12816 chr3 198022430 + 132607339 132607498 L1PA7 6471 + 6310 6467 148997 149 2 0 8 chain 10232 chr3 198022430 + 132608730 132608870 MER85 139 - 0 139 159460 34 11 10 95 chain 38165 chr3 198022430 + 132613618 132614072 L1PA6 6164 + 5704 6162 71894 122 0 1 191 0 1 132 0 2 9 chain 17288 chr3 198022430 + 132632977 132633161 L1PA4 6152 - 1174 1358 134809 184 chain 108164 chr3 198022430 + 132633161 132634356 L1PA4 6152 + 4940 6136 34665 877 0 1 318 chain 20391 chr3 198022430 + 132650645 132651003 THE1B 368 + 0 368 125923 13 2 0 27 8 21 111 30 31 62 30 28 75 chain 11119 chr3 198022430 + 132654016 132654167 MER1B 344 + 103 250 155739 24 0 3 5 3 0 85 4 0 30 chain 13191 chr3 198022430 + 132660599 132660915 L1MA4 2864 - 55 329 147505 35 18 16 18 11 5 11 72 42 7 3 0 37 5 4 99 chain 566752 chr3 198022430 + 132664850 132670878 L1HS 6032 - 2 6030 105 6028 chain 453388 chr3 198022430 + 132675271 132680876 L1PA7 6471 + 21 6459 8637 177 0 1 204 39 23 439 27 37 265 0 2 79 0 6 3 6 0 192 10 0 725 0 1 1375 0 4 57 0 1 401 0 841 773 9 5 69 0 2 263 2 1 120 0 2 370 chain 18068 chr3 198022430 + 132686422 132686765 THE1B 368 - 20 368 132680 106 65 68 35 30 32 107 chain 77324 chr3 198022430 + 132688635 132689483 L1PA4 6152 - 6 854 44821 848 chain 42691 chr3 198022430 + 132697823 132698372 MER41A 554 + 2 554 65785 37 7 8 138 8 6 209 0 5 4 1 0 145 chain 554777 chr3 198022430 + 132718370 132724504 L1PA3long 6157 - 8 6157 849 111 0 1 1460 0 8 2300 0 2 563 0 1 511 4 7 1185 chain 8946 chr3 198022430 + 132729346 132729447 MSTA-int 1630 + 604 705 165893 101 chain 122100 chr3 198022430 + 132729804 132731408 THE1A-int 1579 - 0 1577 30350 86 21 1 117 0 1 250 4 6 431 0 1 4 1 0 144 64 66 427 13 1 42 chain 4526 chr3 198022430 + 132741610 132741664 MER53 195 - 137 191 200488 54 chain 10756 chr3 198022430 + 132791890 132792328 L1MA8 2339 - 17 405 157173 23 51 37 6 1 0 23 89 80 34 72 45 65 14 21 24 12 6 24 chain 127184 chr3 198022430 + 132817281 132818810 THE1A-int 1579 - 9 1552 28770 338 0 13 104 1 5 90 10 8 509 2 1 475 chain 27987 chr3 198022430 + 132827514 132827843 L1PA4 6152 + 5824 6151 93046 173 5 6 133 3 0 15 chain 4921 chr3 198022430 + 132829711 132829766 MER5A 189 - 118 173 196037 55 chain 7780 chr3 198022430 + 132853292 132853387 MER21C 908 + 3 98 172420 95 chain 13062 chr3 198022430 + 132857241 132857461 MER30 238 + 8 238 147980 14 15 12 73 8 0 10 3 21 14 0 6 34 3 0 46 chain 45158 chr3 198022430 + 132857612 132858143 L1PA7 6471 - 2 536 62865 11 0 2 92 3 0 196 0 4 229 chain 283443 chr3 198022430 + 132862840 132866184 L1PA7 6471 - 23 3382 14438 647 0 4 99 0 2 27 0 1 54 1 0 108 0 3 403 1 2 149 2 0 737 0 2 39 0 4 7 8 4 608 0 4 357 0 1 97 chain 37165 chr3 198022430 + 132873300 132873717 L1PA4 6152 + 5736 6152 73286 411 1 0 5 chain 3116 chr3 198022430 + 132885827 132885861 LTR12C 1709 - 1021 1055 222626 34 chain 10129 chr3 198022430 + 132885885 132886155 LTR12C 1709 - 641 937 159955 71 55 139 21 1 0 27 63 6 32 chain 7794 chr3 198022430 + 132886812 132886906 MER49 923 - 640 734 172335 94 chain 49804 chr3 198022430 + 132887306 132887954 LTR12_ 688 + 0 665 59154 77 29 44 21 0 1 338 0 1 183 chain 8250 chr3 198022430 + 132887984 132888106 MSTD 398 - 266 398 169682 17 9 18 77 1 2 18 chain 26603 chr3 198022430 + 132891589 132891935 THE1B 368 + 0 363 97645 39 1 16 87 0 4 26 1 0 20 2 0 121 0 1 49 chain 540833 chr3 198022430 + 132892550 132898652 L1PA4 6152 + 0 6143 2686 126 1 15 301 5 6 634 0 1 609 0 4 419 0 1 659 3 8 273 0 2 457 0 1 211 1 0 237 0 4 670 0 5 661 0 4 835 chain 128963 chr3 198022430 + 132917594 132919180 L1P1 4361 - 2686 4288 28318 104 18 10 108 0 4 736 2 22 618 chain 495817 chr3 198022430 + 132920155 132926279 L1PA7 6471 - 13 6466 7083 146 7 4 422 0 1 288 0 1 17 0 5 219 0 1 399 0 1 556 1 0 152 6 5 399 6 7 209 11 9 86 0 2 6 5 2 18 3 0 795 2 1 38 0 1 28 4 0 102 4 5 11 0 2 349 0 5 57 9 10 282 0 1 516 0 1 573 21 20 55 2 0 19 3 321 6 0 6 194 0 2 98 chain 27500 chr3 198022430 + 132945623 132945980 THE1B 368 - 0 368 94651 128 1 0 48 2 0 19 2 1 113 0 15 44 chain 28780 chr3 198022430 + 132946029 132946336 AluYf4 310 - 3 310 89981 307 chain 4573 chr3 198022430 + 132948360 132948417 MER4D0 881 - 685 742 199966 57 chain 114287 chr3 198022430 + 132951886 132953144 L1PA3long 6157 - 0 1259 33001 151 1 2 1106 chain 107665 chr3 198022430 + 132953147 132954349 L1PA3long 6157 + 3697 4898 34812 554 3 0 41 0 2 604 chain 16230 chr3 198022430 + 132997365 132997598 Tigger3a 397 - 113 396 137672 145 15 64 31 0 1 42 chain 34805 chr3 198022430 + 133023986 133024362 L1PA2 6032 + 5647 6023 76466 376 chain 516630 chr3 198022430 + 133025215 133031706 L1PA6 6164 - 2 6164 5522 254 1 0 208 6 2 510 0 1 453 0 7 37 0 5 485 0 1 17 1 0 992 0 1 248 10 12 76 330 0 96 12 0 423 20 0 74 2 1 44 2 4 455 3 11 127 0 4 425 0 3 665 2 3 105 6 5 74 0 5 67 1 2 260 chain 28982 chr3 198022430 + 133028533 133028843 AluYa5 310 - 0 310 89082 310 chain 271198 chr3 198022430 + 133039804 133043539 L1PB2 3958 + 33 3731 15129 15 1 0 8 14 10 17 5 0 21 9 4 32 2 0 26 0 2 5 13 10 58 6 5 366 4 20 24 27 0 353 0 1 239 1 0 28 0 3 60 1 2 242 6 7 54 9 12 112 0 1 191 0 6 21 5 6 27 0 1 282 28 10 109 3 4 30 1 2 25 0 1 439 1 0 280 1 5 98 2 0 56 1 0 14 2 1 61 2 0 12 4 0 94 14 14 58 1 0 64 1 0 50 chain 11048 chr3 198022430 + 133074802 133074950 L1PB2 3958 + 2204 2352 156027 148 chain 44990 chr3 198022430 + 133074950 133075520 L1PB2 3958 + 2353 2924 63064 137 3 4 430 chain 12056 chr3 198022430 + 133075521 133075675 L1PB2 3958 + 2924 3081 151965 13 0 3 141 chain 14024 chr3 198022430 + 133075675 133075864 L1PB2 3958 + 3083 3283 144488 133 0 4 37 3 10 16 chain 2767 chr3 198022430 + 133075890 133075922 L1PB2 3958 + 3326 3358 229219 32 chain 4958 chr3 198022430 + 133075940 133076001 L1PB2 3958 + 3378 3439 195595 61 chain 16396 chr3 198022430 + 133076018 133076238 L1PB2 3958 + 3451 3672 137219 103 1 0 28 0 3 32 1 0 55 chain 2651 chr3 198022430 + 133076249 133076279 L1PB2 3958 + 3682 3712 231000 30 chain 9194 chr3 198022430 + 133076279 133076407 L1PB2 3958 + 3713 3838 164584 40 2 0 22 1 0 63 chain 67716 chr3 198022430 + 133148609 133149344 L1PA4 6152 - 9 744 49360 735 chain 218932 chr3 198022430 + 133149356 133152167 HERVH-int 3825 + 929 3825 17950 351 7 4 188 1 0 213 4 31 299 0 10 116 0 1 7 0 1 199 0 4 512 2 0 6 0 2 101 166 1 40 1 0 105 8 218 260 0 2 225 chain 34425 chr3 198022430 + 133153376 133153772 LTR7 482 + 0 429 77025 266 0 31 89 0 2 41 chain 53192 chr3 198022430 + 133155451 133156050 L1PA5 6144 - 0 599 56899 599 chain 5626 chr3 198022430 + 133164292 133164360 MER5A 189 - 120 188 188817 68 chain 3327 chr3 198022430 + 133174138 133174526 MLT1E1 597 - 126 595 218454 28 184 203 19 132 194 25 chain 10008 chr3 198022430 + 133181744 133181869 MER50 708 - 22 150 160547 69 0 3 56 chain 35993 chr3 198022430 + 133192306 133192687 SVA_D 2077 - 3 384 74905 381 chain 5588 chr3 198022430 + 133196775 133196868 MER53 195 + 5 97 189188 59 12 11 22 chain 198888 chr3 198022430 + 133199564 133201836 L1PA6 6164 + 3856 6146 19291 6 0 4 493 0 1 341 0 6 601 0 1 245 0 3 244 1 3 189 10 12 12 2 0 57 0 1 71 chain 3967 chr3 198022430 + 133204694 133204738 5S 121 - 31 75 207878 44 chain 5358 chr3 198022430 + 133220510 133220604 LTR33C 613 - 399 496 191457 31 1 0 13 12 16 37 chain 3791 chr3 198022430 + 133250132 133250176 MIRb 242 + 96 140 210513 44 chain 3743 chr3 198022430 + 133269094 133269139 MER45A 178 - 21 66 211291 45 chain 559710 chr3 198022430 + 133270181 133276327 L1PA3long 6157 + 2 6157 372 206 0 7 526 0 1 2434 0 1 2980 chain 4969 chr3 198022430 + 133277051 133277219 LTR32 486 + 258 475 195485 27 93 142 48 chain 25146 chr3 198022430 + 133296200 133296490 AluSp 311 - 8 298 104021 290 chain 33793 chr3 198022430 + 133298825 133299228 L1PA6 6164 - 8 411 77949 403 chain 25304 chr3 198022430 + 133319078 133319374 AluSp 311 - 9 303 103204 170 2 0 124 chain 14196 chr3 198022430 + 133333653 133333822 L1PA5 6144 + 5966 6135 143892 169 chain 48020 chr3 198022430 + 133357884 133358443 L1PA6 6164 + 5584 6156 60465 369 0 13 190 chain 3729 chr3 198022430 + 133361882 133361921 HY3 101 - 1 40 211477 39 chain 4460 chr3 198022430 + 133394146 133394197 MER58B 340 + 136 187 201240 51 chain 83960 chr3 198022430 + 133396707 133397684 L1PA7 6471 - 2 979 41920 977 chain 528351 chr3 198022430 + 133400065 133406200 L1PA5 6144 + 0 6143 4370 1170 9 0 358 0 2 155 0 4 504 0 3 117 2 1 850 1 0 680 0 1 245 0 2 355 0 3 209 5 7 304 0 1 4 1 0 563 5 9 407 1 2 5 1 0 171 3 1 10 chain 3344 chr3 198022430 + 133427735 133427772 LTR67B 553 - 34 71 218161 37 chain 7676 chr3 198022430 + 133428929 133429019 5S 121 - 31 121 173068 90 chain 3435 chr3 198022430 + 133434767 133434805 LTR15 485 - 447 485 216479 38 chain 552975 chr3 198022430 + 133442518 133448653 L1PA3long 6157 - 15 6157 1068 134 0 2 680 1 2 2571 0 3 790 0 1 237 0 1 1022 6 5 694 chain 8589 chr3 198022430 + 133451098 133451201 LTR12D 1347 + 584 687 167798 103 chain 419896 chr3 198022430 + 133454211 133459223 L1PA7 6471 + 1365 6356 9535 61 0 1 168 0 3 6 3 0 29 0 2 28 28 26 338 0 1 108 0 1 330 0 1 17 2 0 35 0 2 110 12 0 69 2 0 395 0 4 384 7 2 60 1 5 21 0 4 369 0 1 1197 2 1 481 0 3 31 30 9 688 chain 7956 chr3 198022430 + 133469634 133469724 L1PA5 6144 - 7 97 171299 90 chain 25324 chr3 198022430 + 133470073 133470339 AluYg6 310 - 9 275 103103 266 chain 29243 chr3 198022430 + 133490300 133490613 AluYb8 318 + 1 314 87833 313 chain 9640 chr3 198022430 + 133503475 133503621 MER1B 344 + 186 339 162395 31 3 0 50 9 19 53 chain 2730 chr3 198022430 + 133503783 133503820 SVA_F 1814 + 923 975 107161 25 3 18 9 chain 2429 chr3 198022430 + 133503820 133503869 SVA_F 1814 + 861 911 93490 26 0 1 23 chain 83026 chr3 198022430 + 133503869 133505076 SVA_F 1814 + 664 1814 42323 41 116 58 12 1 0 15 34 37 28 1 0 32 0 1 60 0 15 48 0 78 85 1 0 13 1 0 84 92 0 543 chain 3025 chr3 198022430 + 133503910 133503951 SVA_F 1814 + 1065 1106 107161 41 chain 2132 chr3 198022430 + 133503983 133504026 SVA_F 1814 + 962 1005 93490 43 chain 1685 chr3 198022430 + 133504054 133504088 SVA_F 1814 + 1033 1067 93490 34 chain 6200 chr3 198022430 + 133504441 133504531 SVA_F 1814 + 1095 1232 115252 10 0 1 13 1 0 8 0 1 4 3 0 23 0 49 28 chain 25350 chr3 198022430 + 133506940 133507399 MER51B 395 + 8 395 102957 22 22 9 50 40 0 31 25 1 124 5 4 37 1 3 44 1 5 57 chain 24868 chr3 198022430 + 133515213 133515566 MER51B 395 + 0 395 105527 33 20 7 49 1 60 5 3 0 91 1 0 150 chain 3047 chr3 198022430 + 133522093 133522125 U2 167 - 135 167 224055 32 chain 3810 chr3 198022430 + 133588591 133588837 MLT1G1 539 + 247 516 210231 32 186 209 28 chain 20854 chr3 198022430 + 133588890 133589246 THE1D 372 - 2 355 124445 166 37 38 27 1 5 55 12 13 11 9 0 38 chain 3068 chr3 198022430 + 133593957 133593992 Tigger3b 1229 - 1137 1172 223601 35 chain 7591 chr3 198022430 + 133619359 133619452 L1MD1 2063 - 416 509 173606 93 chain 11287 chr3 198022430 + 133640793 133640926 L1PA7 6471 + 6182 6315 155097 133 chain 12596 chr3 198022430 + 133640929 133641085 L1PA7 6471 + 6316 6469 149857 141 3 0 12 chain 39281 chr3 198022430 + 133707702 133708231 MER51C 639 + 9 613 70352 48 0 71 173 1 0 92 6 14 10 4 5 141 4 0 50 chain 12428 chr3 198022430 + 133729619 133729772 THE1D 372 - 219 372 150541 153 chain 37468 chr3 198022430 + 133738717 133739179 LTR2 463 + 0 463 72860 362 12 13 88 chain 425016 chr3 198022430 + 133740915 133746025 Harlequin-int 5206 + 125 5206 9419 7 0 2 9 2 0 150 0 2 80 0 1 107 4 0 528 3 4 160 35 5 112 2 1 429 2 1 164 0 3 128 0 1 241 1 2 431 15 4 615 0 1 363 4 0 309 0 7 170 81 82 212 0 1 139 0 4 274 1 0 332 chain 37422 chr3 198022430 + 133746025 133746487 LTR2 463 + 0 463 72936 360 15 16 87 chain 9159 chr3 198022430 + 133766047 133766163 MER101 471 + 351 467 164771 116 chain 2909 chr3 198022430 + 133774936 133774975 MER53 195 + 110 148 226892 12 1 0 26 chain 118129 chr3 198022430 + 133788278 133789667 LTR12C 1709 - 2 1709 31763 152 4 0 327 0 4 106 2 318 493 6 7 39 0 1 260 chain 12573 chr3 198022430 + 133807882 133808027 L1PA3long 6157 - 3 155 149949 135 0 7 10 chain 18031 chr3 198022430 + 133813150 133813464 MER44D 709 - 0 323 132776 43 6 3 14 26 28 13 2 6 6 4 0 121 0 6 11 5 9 63 chain 532876 chr3 198022430 + 133814633 133821044 L1PA5 6144 - 0 6141 3866 11 3 1 246 0 1 86 0 45 280 0 15 157 0 7 1076 0 10 1346 22 0 1251 326 0 157 0 1 986 0 1 464 chain 10389 chr3 198022430 + 133845930 133846163 L1MB3 1562 + 1354 1552 158745 59 66 33 22 1 0 54 7 6 24 chain 32373 chr3 198022430 + 133848428 133848956 MER67A 545 + 4 545 80237 22 2 0 66 2 1 61 2 0 49 7 9 58 3 0 48 3 2 46 3 0 5 19 31 25 1 0 4 6 15 16 0 2 17 0 1 63 chain 91533 chr3 198022430 + 133849927 133850972 MER11C 1089 - 26 1082 39120 176 0 1 148 0 1 45 0 4 367 0 4 67 0 1 242 chain 238043 chr3 198022430 + 133858728 133861584 L1P2 5180 + 2 2864 16882 148 1 0 43 2 1 53 12 12 148 2 1 5 0 1 101 1 0 48 10 0 220 1 16 112 0 1 168 0 3 432 0 1 199 0 1 449 0 1 20 1 0 128 7 5 545 chain 34343 chr3 198022430 + 133866758 133867250 MLT2A1 477 + 0 477 77138 169 4 1 25 27 17 128 1 3 42 5 1 36 5 1 44 0 4 6 chain 139674 chr3 198022430 + 133886009 133887624 L1PA5 6144 + 4506 6144 26194 70 0 47 35 1 0 281 29 1 357 0 4 678 0 1 164 chain 20841 chr3 198022430 + 133908335 133908613 AluY 311 + 13 311 124482 109 12 0 25 0 30 101 1 3 30 chain 60382 chr3 198022430 + 133918616 133919404 LTR12 884 + 0 884 52642 118 1 92 25 38 0 41 2 43 18 0 1 39 2 0 194 0 4 157 1 0 152 chain 13000 chr3 198022430 + 133947151 133947694 L1MA6 2487 + 2146 2484 148251 83 17 1 48 2 0 13 1 0 6 90 43 39 220 81 24 chain 23297 chr3 198022430 + 134022659 134022929 AluSp 311 - 29 299 114220 270 chain 19332 chr3 198022430 + 134116001 134116259 AluY 311 + 51 311 129137 80 18 20 160 chain 2927 chr3 198022430 + 134118335 134118419 L1MD 993 - 179 256 226558 31 31 26 13 2 0 7 chain 25955 chr3 198022430 + 134121948 134122307 THE1B 368 + 0 368 100187 169 1 0 29 10 11 4 0 1 14 13 21 119 chain 27401 chr3 198022430 + 134155132 134155431 AluYc 301 + 2 301 94965 299 chain 21171 chr3 198022430 + 134210909 134211134 AluYg6 310 - 6 231 123307 225 chain 79388 chr3 198022430 + 134234780 134235732 LTR5_Hs 974 - 0 974 43870 80 0 6 14 2 0 40 7 14 520 1 12 288 chain 3517 chr3 198022430 + 134258158 134258214 L1MB2 1706 - 60 114 215103 35 3 2 11 1 0 6 chain 83472 chr3 198022430 + 134272932 134273849 L1PA3long 6157 - 5 922 41940 917 chain 124270 chr3 198022430 + 134273849 134275208 L1PA3long 6157 + 3879 5238 29602 1359 chain 3549 chr3 198022430 + 134279637 134279682 MER82 654 - 588 633 214556 45 chain 125565 chr3 198022430 + 134288022 134289595 THE1B-int 1605 - 0 1605 29223 141 10 13 1000 2 29 139 0 2 281 chain 23322 chr3 198022430 + 134289595 134289937 THE1B 368 - 0 344 114080 58 1 5 135 1 0 32 25 7 65 0 2 5 0 15 20 chain 74392 chr3 198022430 + 134296459 134297754 L1PA8 5853 - 0 999 46319 93 1 0 19 3 2 52 2 0 7 1 0 72 2 0 44 6 5 163 0 2 232 325 31 47 0 2 73 0 2 153 chain 482444 chr3 198022430 + 134301034 134306665 L1PA6 6164 - 10 6164 7643 398 0 1 1389 0 4 657 2 0 5 7 8 304 13 0 111 0 4 83 0 1 330 10 6 404 4 0 123 0 1 109 0 4 381 0 1 68 0 1 957 0 17 181 11 522 84 chain 22429 chr3 198022430 + 134308401 134308810 L1PA15 4387 + 3974 4366 118344 39 23 24 67 1 0 26 1 0 50 6 5 22 4 0 10 2 1 41 14 11 44 3 1 12 6 1 13 0 1 14 1 0 10 chain 30342 chr3 198022430 + 134313911 134314284 THE1C 375 + 0 371 83804 258 1 0 92 1 0 21 chain 4031 chr3 198022430 + 134372058 134372154 MER20 218 - 79 175 206905 42 32 33 17 1 0 4 chain 3122 chr3 198022430 + 134409473 134409514 Charlie1a 1436 - 4 45 222520 41 chain 31481 chr3 198022430 + 134410958 134411323 L1PA5 6144 - 5 367 81675 247 4 1 114 chain 80349 chr3 198022430 + 134420419 134421729 L1PA11 4918 + 3020 4567 43457 294 4 0 17 135 2 326 3 0 6 0 1 30 8 1 188 29 425 21 1 6 56 2 1 65 15 13 16 1 0 20 44 31 15 1 0 13 chain 20057 chr3 198022430 + 134456988 134457352 L1PB1 5432 - 226 565 126946 39 27 20 13 1 0 20 50 18 44 1 0 5 0 1 64 0 15 100 chain 120762 chr3 198022430 + 134464386 134466173 L1PA6 6164 - 8 1407 30774 235 386 0 95 2 0 368 4 0 340 0 4 357 chain 9615 chr3 198022430 + 134464646 134464758 L1PA6 6164 - 270 382 162509 112 chain 11568 chr3 198022430 + 134464763 134464903 L1PA6 6164 - 2 143 154031 85 1 2 54 chain 23414 chr3 198022430 + 134490098 134490631 L1PA7 6471 + 6108 6457 113574 166 229 48 40 0 3 53 6 0 39 chain 8536 chr3 198022430 + 134502307 134502397 5S 121 - 31 121 168099 90 chain 24339 chr3 198022430 + 134593010 134593312 L1PA8A 6298 + 5982 6291 108428 175 0 1 96 2 8 29 chain 16404 chr3 198022430 + 134634872 134635108 LTR12C 1709 - 494 777 137195 97 39 86 100 chain 2457 chr3 198022430 + 134634969 134634997 LTR12C 1709 - 998 1026 231252 28 chain 38715 chr3 198022430 + 134673948 134674363 L1HS 6032 - 0 415 71129 415 chain 18361 chr3 198022430 + 134674363 134674558 L1HS 6032 + 5418 5613 131906 195 chain 332570 chr3 198022430 + 134721089 134724818 L1HS 6032 - 2302 6023 12107 150 9 0 1472 0 1 1400 0 1 450 1 0 247 chain 15239 chr3 198022430 + 134724828 134725050 THE1D 372 + 148 372 140666 16 20 23 6 1 0 179 chain 3829 chr3 198022430 + 134727166 134727218 MIR 256 - 109 159 209949 44 2 0 6 chain 541946 chr3 198022430 + 134744055 134750089 L1PA3long 6157 - 1 6157 2515 4 1 0 371 1 0 2073 9 0 1501 1 3 1298 10 138 398 5 6 211 0 1 95 0 1 56 chain 114835 chr3 198022430 + 134757386 134758824 LTR12C 1709 - 0 1709 32837 59 0 131 42 44 14 22 0 1 212 0 4 107 2 0 6 1 0 115 0 159 331 2 0 192 1 0 4 7 8 116 0 12 66 5 4 104 chain 6852 chr3 198022430 + 134765509 134765593 MER5A 189 + 100 184 178561 84 chain 414034 chr3 198022430 + 134780001 134785975 L1PB1 5432 - 19 5413 9697 9 1 0 13 2 1 20 1 0 24 2 0 12 139 38 16 1 0 44 1 0 15 2 1 50 30 23 9 2 0 24 1 0 8 484 3 21 0 4 396 0 1 50 0 2 79 1 0 4 0 1 53 6 7 753 6 5 392 4 0 402 0 1 11 4 0 78 3 1 310 6 7 31 8 0 291 0 1 59 1 3 189 5 4 239 0 16 84 0 1 197 2 0 6 2 1 494 1 2 5 1 0 199 0 4 268 0 6 19 2 0 86 0 5 296 chain 4378 chr3 198022430 + 134780137 134780198 L1PB1 5432 - 136 196 202215 14 2 1 45 chain 40610 chr3 198022430 + 134780445 134780905 L1PA4 6152 - 0 465 68421 6 0 5 454 chain 6307 chr3 198022430 + 134787880 134788075 L1MB7 1623 - 717 907 182734 23 20 17 4 1 0 11 0 1 21 13 11 11 31 32 16 5 4 39 chain 40681 chr3 198022430 + 134821461 134821983 L1PA8 5853 + 5335 5853 68321 143 0 1 36 0 1 48 1 0 45 2 0 67 4 3 8 2 1 11 0 1 40 2 1 19 1 0 93 chain 39096 chr3 198022430 + 134831237 134831674 L1PA4 6152 - 1 442 70606 64 0 4 373 chain 28588 chr3 198022430 + 134891873 134892175 AluYa5 310 - 8 310 90793 302 chain 86500 chr3 198022430 + 134914195 134915131 L1PA2 6032 - 20 956 40969 936 chain 52361 chr3 198022430 + 134921522 134922254 L1PA8 5853 + 5153 5853 57389 181 1 2 144 0 2 80 1 0 46 2 0 55 0 4 10 56 22 40 3 2 19 1 0 93 chain 2950 chr3 198022430 + 134950790 134950851 MER126 217 - 154 213 226079 30 15 13 16 chain 110816 chr3 198022430 + 134951907 134953403 THE1C-int 1605 - 14 1605 33998 224 0 1 4 1 0 10 0 1 42 0 1 562 53 54 85 3 32 32 0 1 76 13 21 260 1 55 130 chain 546982 chr3 198022430 + 134971056 134977072 L1PA2 6032 - 0 6029 1833 852 0 4 1615 5 3 423 0 4 192 4 0 377 1 0 1010 0 2 834 2 1 203 0 5 251 1 0 94 0 7 152 chain 8463 chr3 198022430 + 134994016 134994162 L1MA5A 2387 - 81 195 168496 11 1 0 63 28 0 15 3 0 25 chain 99264 chr3 198022430 + 135000649 135001736 L1PA3long 6157 - 1898 2985 36959 1087 chain 168278 chr3 198022430 + 135001737 135003617 L1PA3long 6157 + 4280 6157 22251 1027 1 0 845 2 0 5 chain 10819 chr3 198022430 + 135005912 135006042 LTR8 732 - 15 145 156904 130 chain 62379 chr3 198022430 + 135036653 135037514 L1PA3long 6157 - 0 735 51730 352 168 42 341 chain 37312 chr3 198022430 + 135050467 135050890 L1PA5 6144 - 12 435 73068 423 chain 60681 chr3 198022430 + 135060312 135060988 L1PA4 6152 + 5475 6151 52482 676 chain 40402 chr3 198022430 + 135105041 135105514 L1PA4 6152 + 5670 6143 68732 329 7 0 7 0 7 130 chain 446754 chr3 198022430 + 135114712 135121767 L1PA5 6144 - 2 6144 8857 145 1 2 528 1 0 168 0 3 910 0 1 201 0 2 1012 1 0 5 0 1 4 1 0 1021 1908 0 116 7 0 280 0 1 290 0 1 332 1 0 31 0 996 92 chain 72671 chr3 198022430 + 135118783 135119585 L1PA2 6032 - 0 795 47093 12 7 0 783 chain 95232 chr3 198022430 + 135119585 135120618 L1PA2 6032 + 4197 5230 37955 1033 chain 28085 chr3 198022430 + 135124099 135124453 THE1A 353 - 0 353 92695 242 1 0 111 chain 129397 chr3 198022430 + 135124458 135126029 THE1A-int 1579 - 5 1579 28225 251 5 4 805 0 1 149 0 1 54 2 3 157 0 1 148 chain 27429 chr3 198022430 + 135126039 135126382 THE1A 353 - 10 353 94880 45 4 5 183 1 0 110 chain 2893 chr3 198022430 + 135140444 135140475 Tigger3b 1229 - 1135 1166 227168 31 chain 24956 chr3 198022430 + 135146606 135146898 L1PA5 6144 + 5853 6144 105024 277 4 3 11 chain 33133 chr3 198022430 + 135154259 135154621 L1PA3long 6157 - 0 362 79012 362 chain 235892 chr3 198022430 + 135154621 135157228 L1PA3long 6157 + 3302 5909 16983 2607 chain 66787 chr3 198022430 + 135157228 135157988 L1HS 6032 + 971 1731 49556 760 chain 58920 chr3 198022430 + 135157990 135158695 L1P1 4361 - 3656 4360 53442 131 1 0 573 chain 13692 chr3 198022430 + 135183874 135184055 L1P3 4156 + 3958 4136 145624 149 2 0 7 2 1 21 chain 3063 chr3 198022430 + 135199094 135199132 MER63A 208 + 164 202 223764 38 chain 10893 chr3 198022430 + 135231904 135232020 L1PA4 6152 + 5852 5968 156613 116 chain 95472 chr3 198022430 + 135241012 135242430 L1PA14 3548 + 2079 3465 37965 418 5 7 22 11 10 153 1 0 251 2 0 13 2 0 22 0 1 8 1 0 16 2 0 5 2 0 98 19 15 13 2 0 6 1 0 80 23 22 93 1 0 11 5 1 35 4 2 12 1 0 5 1 0 14 6 5 38 6 0 10 chain 553802 chr3 198022430 + 135303567 135309597 L1PA2 6032 + 2 6032 973 320 0 3 39 0 2 117 3 4 1049 0 1 1677 4 0 1165 3 0 1653 chain 13537 chr3 198022430 + 135311183 135311351 L1PA8 5853 - 1202 1375 145604 130 0 5 38 chain 92978 chr3 198022430 + 135311351 135312559 L1PA8 5853 + 4656 5853 38663 55 4 0 295 8 7 372 0 2 143 1 0 34 1 0 44 2 0 76 13 11 45 2 1 19 2 1 92 chain 5004 chr3 198022430 + 135313137 135313277 MER58A 224 + 45 186 195103 17 67 68 56 chain 514304 chr3 198022430 + 135323084 135328997 L1PA5 6144 + 3 6143 5745 862 0 3 458 28 29 638 0 1 501 0 222 1409 0 1 217 0 4 141 3 0 1503 4 5 6 1 0 129 3 1 10 chain 16773 chr3 198022430 + 135330219 135330431 THE1B 368 + 0 214 136190 169 1 0 27 1 4 14 chain 108503 chr3 198022430 + 135330770 135332294 THE1B-int 1605 + 0 1605 34560 86 0 1 19 1 4 137 49 55 93 0 64 171 32 33 81 42 10 15 0 33 275 1 2 64 4 6 426 0 2 28 chain 25286 chr3 198022430 + 135334471 135334810 Tigger1 2417 - 627 956 103286 133 1 2 165 14 3 26 chain 182267 chr3 198022430 + 135364217 135366835 L1PA13 3608 - 954 3487 20761 576 0 2 32 0 1 101 1 0 5 5 7 162 5 6 432 1 3 266 0 2 86 0 1 188 0 17 20 8 13 99 6 4 97 1 0 19 2 0 13 3 2 4 1 0 15 1 0 18 6 2 11 16 14 8 1 0 12 1 0 109 82 0 16 7 5 68 27 17 24 3 0 12 2 1 26 3 0 17 chain 553219 chr3 198022430 + 135377445 135383450 L1PA2 6032 + 0 6031 1045 1242 1 18 2860 0 8 1729 0 1 173 chain 43773 chr3 198022430 + 135387478 135387969 L1PA3long 6157 - 2 493 64486 120 1 0 226 0 1 144 chain 26239 chr3 198022430 + 135394728 135395103 MER4E 760 + 389 752 99053 12 0 1 5 1 0 3 1 0 107 24 13 222 chain 181374 chr3 198022430 + 135395204 135397216 L1PA4 6152 - 1 2020 20862 287 0 3 553 0 4 1172 chain 87284 chr3 198022430 + 135402654 135404009 L1MA3 4352 + 2995 4321 40654 33 28 29 123 0 4 87 0 4 308 0 1 72 5 6 231 1 0 163 84 68 75 1 3 15 22 6 12 4 0 19 7 5 23 1 0 6 1 0 29 1 0 4 chain 29794 chr3 198022430 + 135407242 135407552 AluYa5 310 - 0 310 85469 310 chain 5354 chr3 198022430 + 135410644 135410702 Tigger3b 1229 - 1121 1179 191499 58 chain 128405 chr3 198022430 + 135418928 135420715 L1PA15 4387 + 2574 4304 28474 436 0 1 11 41 5 142 4 0 456 0 3 170 16 14 15 4 0 40 1 0 24 3 1 41 1 0 171 2 1 25 1 0 55 1 0 16 4 0 15 2 1 39 17 14 34 chain 3575 chr3 198022430 + 135437270 135437308 L1MA6 2487 + 2341 2379 214048 38 chain 32081 chr3 198022430 + 135462946 135463387 MLT2A1 477 + 2 477 80720 110 0 1 55 9 6 5 0 1 24 0 1 179 25 59 34 chain 3257 chr3 198022430 + 135479447 135479485 MLT2B1 522 + 484 522 219845 38 chain 144975 chr3 198022430 + 135493922 135496027 L1PA15 4387 + 2214 4327 25330 63 0 1 27 1 0 815 10 28 21 3 0 201 4 3 311 0 5 4 0 1 87 12 13 19 2 0 17 13 8 53 7 5 10 2 1 11 15 14 131 1 2 39 1 0 26 8 9 41 10 9 16 23 20 27 21 18 27 14 18 12 chain 79337 chr3 198022430 + 135508732 135509667 L1PA6 6164 - 2 939 43891 105 0 1 762 1 2 67 chain 149430 chr3 198022430 + 135537612 135539938 L1MA3 4352 + 0 2377 24698 15 33 26 68 10 15 31 1 0 20 5 0 8 0 11 112 10 8 32 1 0 99 0 5 238 4 3 36 0 9 37 2 0 95 1 0 19 1 0 38 0 3 152 11 10 18 8 7 74 22 7 84 21 23 46 0 1 12 2 0 26 13 29 112 1 0 15 4 5 32 0 1 5 1 0 48 20 19 36 0 1 4 4 6 81 1 2 80 0 24 11 7 8 172 0 5 19 0 11 72 0 1 126 2 1 21 0 2 5 12 5 30 chain 510146 chr3 198022430 + 135541349 135546972 L1PA3long 6157 + 6 6157 6151 88 0 526 1929 0 2 617 4 3 2236 1 0 415 0 2 333 chain 5655 chr3 198022430 + 135552209 135552300 MLT1B 390 - 280 381 188513 42 1 18 6 7 0 35 chain 13332 chr3 198022430 + 135573140 135573408 L1PB1 5432 - 19 265 146969 9 1 0 9 9 8 17 1 0 24 2 0 11 11 8 18 19 9 4 1 0 16 1 0 43 1 0 16 2 1 53 chain 27325 chr3 198022430 + 135573571 135574040 L1PB 1623 + 1164 1585 95190 143 4 0 139 1 0 7 2 1 30 8 0 17 11 7 8 1 0 8 56 29 22 2 0 10 chain 31336 chr3 198022430 + 135574184 135574535 L1PA3long 6157 - 11 362 81920 351 chain 16979 chr3 198022430 + 135586472 135586696 AluJb 308 + 71 294 135644 40 9 8 175 chain 11052 chr3 198022430 + 135601110 135601416 L1MC1 2226 + 1917 2198 156003 49 1 2 12 3 0 14 2 0 49 27 20 13 89 76 32 1 0 14 chain 66007 chr3 198022430 + 135605102 135605875 L1PA7 6471 - 17 794 50093 606 6 9 57 0 1 104 chain 2788 chr3 198022430 + 135606748 135606780 MER3 215 - 169 201 228894 32 chain 6500 chr3 198022430 + 135614705 135614893 MER3 215 + 6 207 181233 42 36 37 21 50 62 39 chain 3806 chr3 198022430 + 135636104 135636233 MER96 175 + 0 175 210288 23 22 23 25 38 83 21 chain 197864 chr3 198022430 + 135651113 135653280 L1PA3long 6157 - 8 2177 19366 841 0 2 1326 chain 257973 chr3 198022430 + 135654190 135657109 HERV17-int 4347 + 1427 4347 15810 41 1 0 1372 0 1 1106 1 2 398 chain 27601 chr3 198022430 + 135657423 135657750 LTR17 781 + 0 326 94342 32 8 7 287 chain 4111 chr3 198022430 + 135677860 135677963 L1M3f 2199 - 61 150 205757 18 44 30 41 chain 5000 chr3 198022430 + 135725289 135725455 MER58C 217 - 32 196 195142 23 60 60 7 5 0 12 0 2 16 10 11 33 chain 26857 chr3 198022430 + 135729259 135729563 AluYa5 310 - 2 306 96783 304 chain 327059 chr3 198022430 + 135731658 135736221 L1PB1 5432 - 9 4547 12304 9 2 1 9 1 0 11 1 0 23 1 0 24 27 22 27 13 1 16 4 3 36 5 4 69 2 0 11 4 0 13 1 0 4 3 2 24 82 20 260 1 4 32 2 1 123 17 16 31 3 0 21 1 0 79 0 17 401 0 22 65 0 1 164 4 0 51 5 6 68 10 0 7 5 9 137 0 1 36 0 3 258 0 1 52 1 0 213 1 9 117 0 3 44 1 0 22 3 1 38 10 12 275 4 0 408 5 6 326 6 12 333 3 0 6 34 40 195 0 1 169 0 2 42 0 17 52 chain 3199 chr3 198022430 + 135742846 135742894 MADE2 80 - 12 61 220943 12 1 2 35 chain 400442 chr3 198022430 + 135749266 135755443 L1PB1 5432 - 12 5355 10081 16 1 0 13 1 0 21 1 0 15 12 10 13 1 0 4 3 1 19 24 12 16 1 0 44 1 0 15 2 1 32 4 7 14 16 10 10 1 0 9 1 0 24 96 20 28 0 1 68 6 7 175 5 0 7 12 27 26 53 0 32 9 10 91 0 1 9 1 5 57 1 0 4 0 1 27 0 1 234 0 1 51 13 12 281 3 0 5 0 3 7 12 0 195 13 1 143 0 1 4 1 0 61 345 0 499 1 0 4 14 8 6 3 0 151 0 1 357 15 1 73 5 0 53 320 0 460 0 3 51 3 1 64 0 1 100 0 5 28 0 3 145 0 1 106 8 0 59 1 2 106 0 2 45 0 1 66 1 2 255 0 1 94 0 2 171 5 9 18 0 3 393 0 3 88 chain 26102 chr3 198022430 + 135766071 135766461 L1PA16 3655 + 3173 3568 99614 26 28 33 57 3 1 189 1 3 86 chain 25693 chr3 198022430 + 135773092 135773391 AluSc 308 - 2 301 101311 299 chain 40819 chr3 198022430 + 135776923 135777585 L1PA13 3608 + 2695 3448 68149 52 1 12 14 13 77 54 0 13 146 14 18 51 1 0 20 0 2 6 1 0 96 20 18 41 0 9 12 1 0 16 11 9 24 2 1 10 2 0 47 2 0 5 chain 21788 chr3 198022430 + 135781294 135781575 AluY 311 + 11 298 121067 37 17 22 62 0 1 165 chain 147172 chr3 198022430 + 135781618 135783258 L1PA4 6152 + 4495 6140 25005 483 1 0 318 0 6 838 chain 24710 chr3 198022430 + 135803951 135804307 THE1B 368 + 2 368 106384 167 1 0 11 21 34 16 1 0 10 1 0 128 chain 22797 chr3 198022430 + 135823168 135823433 AluSp 311 - 32 297 116586 265 chain 438632 chr3 198022430 + 135833549 135839127 L1PA8 5853 + 108 5853 9093 52 1 0 146 0 4 11 7 23 201 0 2 82 22 41 270 0 2 5 14 12 159 6 11 10 1 0 349 0 2 29 4 1 28 1 6 352 0 2 71 1 0 295 12 16 256 0 1 258 0 5 119 0 4 241 0 3 383 1 0 130 1 0 107 0 2 360 0 3 41 0 4 524 0 1 158 1 4 58 0 2 39 0 3 11 0 2 210 0 1 153 1 5 186 1 0 27 22 89 8 4 0 11 0 1 36 12 27 90 chain 519627 chr3 198022430 + 135844863 135851013 L1PA6 6164 + 0 6162 5198 145 6 25 67 0 2 261 25 5 12 0 2 48 1 0 774 7 11 973 5 0 21 0 1 298 0 1 539 2 0 4 0 1 76 0 4 483 0 3 242 1 0 326 1 0 40 0 8 450 0 2 202 2 0 173 6 0 113 0 4 368 4 7 14 9 7 298 2 0 152 chain 24482 chr3 198022430 + 135859307 135859605 AluSp 311 + 2 297 107640 27 5 2 266 chain 19105 chr3 198022430 + 135873768 135874034 AluSc 308 + 0 263 129804 20 7 6 152 1 0 50 10 9 26 chain 29543 chr3 198022430 + 135887222 135887608 L1PA7 6471 + 6079 6469 86440 228 0 7 6 6 0 33 1 6 90 7 5 15 chain 2106 chr3 198022430 + 135917328 135917517 L1PA16 3655 + 2772 2964 115675 4 0 1 126 0 3 11 1 0 47 chain 24037 chr3 198022430 + 135918742 135919027 AluSp 311 + 0 287 110127 79 1 3 205 chain 1616 chr3 198022430 + 135919246 135919391 L1PA16 3655 + 3427 3577 115675 41 2 7 102 chain 23112 chr3 198022430 + 135927124 135927402 AluY 311 + 23 299 115078 20 0 1 89 3 0 166 chain 3323 chr3 198022430 + 135935566 135935649 MER8 282 + 0 133 218514 33 34 84 16 chain 29541 chr3 198022430 + 135936280 135936744 LTR7B 505 - 0 505 86449 51 14 13 79 1 0 52 0 88 27 66 11 69 0 10 105 chain 88595 chr3 198022430 + 135938268 135939422 HERVH-int 3825 - 0 1533 40147 275 0 2 8 1 7 11 1 0 247 33 32 57 4 371 10 0 3 135 0 3 372 chain 27343 chr3 198022430 + 135942126 135942556 LTR7B 505 - 0 505 95132 22 2 0 8 0 1 20 14 13 76 1 0 54 1 34 27 28 25 12 0 38 57 0 10 108 chain 552916 chr3 198022430 + 135943149 135949279 L1PA3long 6157 + 11 6157 1075 1082 0 3 576 0 1 1782 14 0 182 16 37 1207 0 4 422 0 1 849 chain 2611 chr3 198022430 + 135958362 135958409 LTR16B2 458 + 245 291 231557 27 9 8 11 chain 6147 chr3 198022430 + 135987030 135987266 L1MB7 1623 - 872 1131 184009 44 46 67 28 94 96 24 chain 16615 chr3 198022430 + 136021408 136021588 L1PA3long 6157 - 0 180 136624 180 chain 20138 chr3 198022430 + 136058115 136058363 AluSc 308 + 14 279 126715 20 0 17 228 chain 20274 chr3 198022430 + 136058996 136059263 AluSp 311 - 20 311 126300 9 8 0 59 5 37 186 chain 350238 chr3 198022430 + 136089209 136093115 L1PA4 6152 - 6 3935 11595 616 0 2 220 0 4 946 0 8 409 0 1 1241 0 5 114 0 3 360 chain 3989 chr3 198022430 + 136119721 136119766 Charlie1a 1436 - 247 292 207555 45 chain 17307 chr3 198022430 + 136130520 136130743 AluSg7 307 + 10 237 134770 95 13 16 5 0 1 110 chain 22667 chr3 198022430 + 136143692 136143969 AluSc5 308 - 19 298 117237 12 1 3 264 chain 42766 chr3 198022430 + 136175883 136176502 LTR14B 630 + 9 630 65697 154 1 0 10 0 1 88 0 11 19 0 25 72 3 11 24 31 1 11 8 0 112 4 0 82 chain 450866 chr3 198022430 + 136184793 136189973 L1PA5 6144 + 926 6144 8744 106 0 1 1069 6 1 845 0 3 673 13 34 6 0 2 6 2 0 534 0 3 1446 0 1 12 0 1 136 0 1 183 0 7 130 2 7 11 chain 563000 chr3 198022430 + 136197920 136203945 L1HS 6032 - 2 6032 267 2895 0 3 2286 0 1 634 0 1 210 chain 28492 chr3 198022430 + 136205885 136206245 L1PA8A 6298 - 19 380 91217 93 4 5 263 chain 71005 chr3 198022430 + 136233090 136233910 L1PA6 6164 + 5341 6162 47926 674 0 1 146 chain 498236 chr3 198022430 + 136241428 136247227 L1PA5 6144 - 15 5808 6942 153 17 18 663 0 3 99 28 0 1261 0 1 1430 0 1 403 0 3 865 1 3 85 0 6 586 2 4 148 0 3 58 chain 75052 chr3 198022430 + 136249945 136250765 L1PA2 6032 + 5212 6032 45993 470 1 0 8 0 1 341 chain 15733 chr3 198022430 + 136266620 136266915 L1MB1 2102 - 898 1184 139163 31 3 0 78 7 6 16 5 0 40 1 0 45 43 44 26 chain 2802 chr3 198022430 + 136274931 136274961 L1MC2 1988 + 1958 1988 228700 30 chain 29941 chr3 198022430 + 136299360 136299674 AluYb8 318 - 4 318 84993 314 chain 7315 chr3 198022430 + 136307050 136307147 HY4 93 + 0 90 175329 74 7 0 16 chain 3558 chr3 198022430 + 136330290 136330332 Tigger4b 360 - 183 225 214383 42 chain 38227 chr3 198022430 + 136336874 136337331 LTR10F 562 + 0 554 71806 35 1 10 99 0 87 273 0 1 49 chain 5168 chr3 198022430 + 136371642 136371787 MER20 218 - 1 182 193366 33 71 107 41 chain 8422 chr3 198022430 + 136417547 136417689 L1PB2 3958 + 3699 3836 168720 21 0 3 30 8 6 16 1 0 50 5 0 11 chain 169852 chr3 198022430 + 136441506 136443460 SVA_D 2077 + 4 2077 22070 15 0 3 881 0 85 14 0 1 31 1 2 7 0 1 213 0 1 4 10 37 8 0 1 80 0 1 4 18 17 208 2 1 458 chain 24870 chr3 198022430 + 136478362 136478669 AluY 311 + 0 302 105517 30 5 0 25 1 0 77 0 1 169 chain 1298 chr3 198022430 + 136480972 136481124 THE1B 368 + 1 152 117649 103 1 0 48 chain 8684 chr3 198022430 + 136481142 136481329 THE1B 368 + 169 368 167279 29 17 19 11 39 50 59 1 0 31 chain 103159 chr3 198022430 + 136481329 136482917 THE1B-int 1605 + 0 1590 35959 25 3 0 5 5 8 204 0 1 88 0 1 97 27 52 80 169 76 24 20 38 180 0 6 82 1 11 82 3 0 34 9 29 148 0 3 62 0 1 47 0 13 193 chain 1767 chr3 198022430 + 136483411 136483618 THE1B 368 + 152 368 117649 17 1 0 29 35 45 125 chain 4023 chr3 198022430 + 136506675 136506738 ORSL 269 - 47 111 207036 4 0 1 5 1 0 9 1 2 43 chain 20326 chr3 198022430 + 136508243 136508506 AluSc8 310 + 16 275 126160 118 16 11 37 0 1 92 chain 21781 chr3 198022430 + 136518790 136519196 MSTA 426 + 0 426 121097 62 4 14 24 25 29 15 8 12 38 43 47 32 1 0 31 6 5 117 chain 24524 chr3 198022430 + 136530487 136530872 MER61C 433 - 0 405 107418 14 1 0 20 10 9 58 0 1 17 0 1 99 1 0 55 8 20 58 26 35 18 chain 7137 chr3 198022430 + 136530892 136531068 L1MB3 1562 - 560 738 176491 8 1 0 13 11 12 13 2 0 24 39 44 19 2 1 44 chain 15656 chr3 198022430 + 136533666 136533896 Tigger2b_Pri 1066 - 801 1028 139411 123 3 1 21 0 4 36 1 0 26 7 3 13 chain 160928 chr3 198022430 + 136541570 136546661 L1MA2 4263 - 149 3200 23207 10 2 1 37 28 43 57 1 0 9 2 1 140 10 7 22 0 1 124 1 0 74 42 39 168 2 0 5 1 3 50 0 1 57 313 0 61 3 5 296 0 1 205 9 4 37 0 1 10 8 6 89 30 0 78 364 18 91 5 10 60 1101 486 19 0 1 4 67 5 212 853 162 87 1 0 120 0 3 102 2 7 22 chain 22371 chr3 198022430 + 136543590 136543913 L1PA6 6164 - 4 316 118621 6 6 0 7 2 0 135 26 23 141 chain 4554 chr3 198022430 + 136545212 136545262 L1MA2 4263 + 2558 2608 197043 50 chain 8705 chr3 198022430 + 136545815 136545907 SVA_B 1603 - 0 92 167169 92 chain 23256 chr3 198022430 + 136560298 136560577 AluSp 311 + 10 286 114412 117 4 1 158 chain 24198 chr3 198022430 + 136594020 136594311 L1P1 4361 - 20 308 108763 12 2 1 23 2 1 154 1 0 97 chain 93175 chr3 198022430 + 136594311 136595344 L1P1 4361 + 2297 3334 38607 955 0 4 78 chain 34578 chr3 198022430 + 136598416 136598839 L1PA6 6164 + 5719 6162 76785 207 0 18 158 1 3 57 chain 108685 chr3 198022430 + 136608079 136609406 LTR12C 1709 - 0 1709 34517 145 0 101 235 0 4 67 0 1 36 2 0 10 1 0 96 0 278 262 7 10 163 0 2 28 4 0 271 chain 32273 chr3 198022430 + 136612038 136612507 L1PB1 5432 - 416 986 80403 74 0 12 24 4 73 16 1 12 11 9 1 89 0 4 78 0 1 9 1 5 80 0 4 48 0 4 25 chain 8159 chr3 198022430 + 136615715 136615821 L1MA4A 3247 - 117 222 170179 23 1 0 82 chain 13642 chr3 198022430 + 136637437 136637628 MER30 238 + 24 238 145811 82 8 27 26 0 1 36 0 3 39 chain 7801 chr3 198022430 + 136643609 136643726 MER85 139 + 7 139 172301 51 1 4 34 5 17 26 chain 564934 chr3 198022430 + 136682535 136688578 L1HS 6032 - 1 6032 210 3526 0 1 2471 13 0 33 chain 124030 chr3 198022430 + 136705562 136706993 LTR12C 1709 - 0 1709 29693 481 0 4 106 3 1 5 1 0 70 3 0 33 0 1 27 0 278 399 0 1 303 chain 22981 chr3 198022430 + 136712270 136712555 L1PA6 6164 - 4 290 115712 149 0 1 136 chain 6162 chr3 198022430 + 136717231 136717463 L1MEf 1413 - 238 455 183859 30 3 0 7 131 119 61 chain 522280 chr3 198022430 + 136720629 136726762 L1PA6 6164 - 8 6164 4928 139 12 14 679 0 6 949 0 4 270 14 19 379 7 5 60 1 0 862 0 2 554 0 2 747 3 0 460 0 1 14 0 1 136 0 2 284 1 0 47 0 2 279 0 2 212 0 1 24 chain 224073 chr3 198022430 + 136736032 136738568 L1PA5 6144 - 0 2530 17651 112 1 0 60 2 3 16 0 1 1156 0 1 72 2 10 13 11 0 1020 5 0 66 chain 49190 chr3 198022430 + 136762111 136762637 L1PA2 6032 - 18 544 59603 526 chain 5115 chr3 198022430 + 136777290 136777351 MSTC 436 + 364 425 193912 61 chain 90053 chr3 198022430 + 136788688 136789728 L1PA5 6144 - 9 1050 39631 163 2 3 16 1 0 147 0 1 510 2 1 128 0 1 71 chain 6469 chr3 198022430 + 136808486 136808562 L1M1 2793 - 1272 1348 181479 76 chain 9204 chr3 198022430 + 136809617 136809750 L1MA1 4479 - 337 467 164539 35 3 1 28 1 0 66 chain 194305 chr3 198022430 + 136812727 136814797 L1HS 6032 - 0 2070 19648 2070 chain 25566 chr3 198022430 + 136818933 136819415 L1PA15 4387 + 3890 4356 101898 43 1 0 8 1 2 161 1 0 26 16 15 37 4 3 19 9 5 8 1 0 26 29 30 20 3 1 20 3 1 15 8 3 23 chain 5388 chr3 198022430 + 136820236 136820303 MER41B 635 - 87 154 191110 67 chain 11161 chr3 198022430 + 136831716 136831855 Tigger3b 1229 + 955 1095 155586 61 0 1 78 chain 4230 chr3 198022430 + 136854888 136855025 Kanga1d 558 + 150 301 204180 38 73 87 26 chain 299775 chr3 198022430 + 136859007 136862358 L1PA4 6152 + 2789 6152 13437 319 0 10 1768 0 5 1180 0 1 74 4 0 6 chain 147450 chr3 198022430 + 136887170 136888802 L1PA3long 6157 - 0 1635 24971 7 0 1 12 0 2 1613 chain 128798 chr3 198022430 + 136916705 136918157 SVA_D 2077 - 0 2046 28363 638 0 1 32 0 488 80 0 40 35 0 40 73 0 40 557 15 0 22 chain 518698 chr3 198022430 + 136929875 136936004 L1PA6 6164 + 0 6156 5308 237 18 20 261 0 2 47 1 0 456 1 0 208 0 1 204 1 0 6 0 1 612 0 2 156 0 2 80 0 3 27 4 0 400 6 4 431 4 0 361 0 1 285 0 11 539 0 8 949 0 5 10 0 1 640 4 6 33 7 6 141 chain 4017 chr3 198022430 + 136959645 136959694 Tigger3a 397 + 143 192 207127 49 chain 13585 chr3 198022430 + 136960093 136960254 Tigger3a 397 + 143 304 146038 161 chain 5022 chr3 198022430 + 136966584 136966652 L1MA6 2487 - 83 147 194907 7 1 0 20 3 0 37 chain 143847 chr3 198022430 + 136969880 136971528 L1PA3long 6157 + 4537 6149 25507 1553 36 0 59 chain 18879 chr3 198022430 + 136971605 136971820 L1PA4 6152 + 5768 5983 130426 215 chain 13994 chr3 198022430 + 136971822 136971978 L1PA4 6152 + 5984 6140 144599 156 chain 123231 chr3 198022430 + 137027853 137029207 L1PA3long 6157 - 5 1357 29967 796 2 0 556 chain 79121 chr3 198022430 + 137029208 137030067 L1PA3long 6157 + 3942 4801 43989 859 chain 466523 chr3 198022430 + 137033100 137038885 L1PA7 6471 - 10 6470 8171 6 0 3 593 0 3 94 0 3 131 0 5 577 0 10 32 2 1 228 0 3 390 1 2 51 0 1 299 3 10 9 3 1 16 0 2 4 0 1 62 28 4 314 1 0 753 0 6 6 1 653 25 1 0 25 0 1 313 4 0 64 0 1 108 0 8 280 0 1 6 8 7 7 1 0 49 20 16 72 0 1 203 0 2 582 0 2 11 0 1 236 0 1 161 1 0 4 chain 5435 chr3 198022430 + 137055783 137055845 L1PA8 5853 - 0 62 190655 62 chain 29955 chr3 198022430 + 137056138 137056513 THE1C 375 + 0 375 84954 375 chain 114100 chr3 198022430 + 137056513 137058074 THE1C-int 1605 + 0 1596 33075 18 3 5 416 15 22 201 0 3 6 62 72 273 1 14 368 0 1 4 4 2 62 0 1 128 chain 101016 chr3 198022430 + 137072366 137073443 L1HS 6032 + 4955 6032 36509 1077 chain 173222 chr3 198022430 + 137083429 137085417 L1PA4 6152 + 4138 6143 21690 666 4 0 160 0 1 129 1 2 453 0 9 259 0 1 71 0 1 7 0 1 53 0 7 185 chain 59241 chr3 198022430 + 137088027 137088714 L1PA4 6152 - 9 697 53255 104 0 1 39 4 16 332 14 2 194 chain 32093 chr3 198022430 + 137088714 137089082 L1PA4 6152 + 5096 5465 80705 204 0 1 164 chain 494191 chr3 198022430 + 137089374 137096587 L1PA7 6471 - 5 6466 7161 7 2 0 134 28 29 294 3 5 69 0 6 212 3 0 30 795 11 13 0 1 38 0 3 38 4 0 442 1 0 306 1 2 21 0 2 449 0 2 23 8 10 477 10 6 291 29 0 7 3 2 37 1 0 207 0 40 61 1 0 559 8 7 68 0 1 35 0 2 745 1 5 395 26 25 83 1 4 256 1 0 4 0 1 207 0 1 56 63 57 221 0 1 42 0 3 9 2 1 21 0 12 199 17 11 6 0 6 143 chain 69080 chr3 198022430 + 137090156 137090946 L1PA4 6152 + 5357 6152 48703 784 0 5 6 chain 30853 chr3 198022430 + 137097200 137097689 L1PA11 4918 + 4110 4567 82766 108 0 9 101 20 0 67 2 1 11 2 0 68 2 0 13 1 0 21 44 30 15 1 0 13 chain 46404 chr3 198022430 + 137098698 137099279 L1PA10 4194 + 3520 4110 61684 88 0 6 316 0 2 118 0 1 59 chain 23592 chr3 198022430 + 137105806 137106167 THE1D 372 + 0 372 112622 162 0 2 5 40 55 83 5 0 33 1 0 32 chain 514307 chr3 198022430 + 137109777 137120121 L1PA7 6471 - 2 6470 5744 754 7 5 88 2 0 216 0 2 35 1 2 98 0 2 293 13 12 189 1 0 248 5 6 111 0 6 400 1 0 28 2 3 468 1 0 10 3 2 696 0 1 159 13 0 23 0 1 14 3878 0 263 9 8 4 0 1 148 0 3 286 1 8 65 5 1 50 2 1 197 2 1 442 6 8 444 8 9 246 0 2 220 9 10 175 1 0 4 chain 323577 chr3 198022430 + 137113656 137117516 L1PA6 6164 + 2298 6162 12461 35 0 1 38 0 1 226 0 1 198 0 2 112 1 2 275 0 1 128 1 0 106 1 0 264 2 0 3 1 0 5 0 1 854 0 1 100 0 5 39 1 2 617 0 1 428 8 0 82 0 1 335 chain 544558 chr3 198022430 + 137131319 137137588 L1PA4 6152 + 6 6151 2132 454 6 0 120 1 0 147 8 4 709 1 0 1790 116 7 135 1 0 2774 2 0 5 chain 8715 chr3 198022430 + 137134563 137134660 L1PA4 6152 + 2544 2642 167111 91 0 1 6 chain 26097 chr3 198022430 + 137142530 137142885 THE1A 353 + 0 353 99633 111 1 0 91 1 0 5 3 0 5 3 6 10 0 1 5 2 1 118 chain 517650 chr3 198022430 + 137149351 137155529 L1PA6 6164 + 1 6160 5407 381 0 3 75 7 6 52 0 2 47 1 0 24 3 1 472 3 0 159 0 1 1012 2 0 98 23 7 176 2 1 64 0 4 63 1 20 128 1 0 285 0 1 113 0 1 2108 18 0 502 0 1 345 6 0 7 chain 34565 chr3 198022430 + 137156501 137156884 L1PA3long 6157 + 5767 6150 76803 383 chain 3078 chr3 198022430 + 137157063 137157118 Tigger6a 1079 - 902 958 223369 22 10 11 23 chain 13529 chr3 198022430 + 137160928 137161129 Tigger3c 601 - 34 235 146250 90 5 6 16 10 9 80 chain 3393 chr3 198022430 + 137161186 137161222 Tigger3b 1229 - 1138 1174 217249 36 chain 27823 chr3 198022430 + 137162861 137163238 THE1C 375 - 0 373 93616 25 1 0 160 1 0 4 2 3 59 3 0 122 chain 115575 chr3 198022430 + 137163251 137164794 THE1C-int 1605 - 13 1574 32589 47 0 1 4 1 0 158 8 10 218 1 2 104 11 5 292 5 10 68 1 0 221 0 7 9 5 6 82 0 1 11 0 7 229 0 1 68 chain 544517 chr3 198022430 + 137173799 137179823 L1PA3long 6157 - 1 6157 2142 5 0 2 5243 1 129 521 5 6 97 1 2 151 chain 5144 chr3 198022430 + 137187955 137188234 MER33 330 - 36 322 193612 25 199 206 55 chain 25418 chr3 198022430 + 137202259 137202627 THE1D 372 + 0 372 102602 166 42 45 61 0 1 99 chain 92752 chr3 198022430 + 137217168 137218244 MER11C 1089 + 0 1079 38731 176 0 2 59 0 1 58 0 1 71 1 0 711 chain 9727 chr3 198022430 + 137247611 137247737 MER2 342 + 85 215 161950 24 0 2 35 1 0 56 0 3 10 chain 501760 chr3 198022430 + 137262463 137268622 L1PA6 6164 + 17 6159 6738 60 0 11 72 8 0 8 10 18 18 0 1 36 5 4 26 6 7 191 1 0 11 11 12 197 109 0 967 0 10 598 0 2 67 0 1 123 2 4 5 2 0 58 16 71 287 0 1 304 1 0 1031 0 1 150 1 5 107 0 1 455 0 1 293 1 0 80 0 5 510 0 1 85 1 0 156 0 1 90 chain 20756 chr3 198022430 + 137273166 137273457 L1PA15-16 3068 + 1134 1402 124777 158 22 0 103 1 0 7 chain 105672 chr3 198022430 + 137276200 137277497 L1P1 4361 + 565 1843 35336 79 7 8 104 6 11 173 0 4 142 0 1 55 6 0 41 25 1 659 chain 141691 chr3 198022430 + 137278973 137280579 L1PA5 6144 + 4525 6129 25869 776 0 1 699 10 7 121 chain 5289 chr3 198022430 + 137281515 137281614 L1MC4a 1092 + 562 660 192131 32 22 21 45 chain 10256 chr3 198022430 + 137284636 137284782 MSTA 426 + 280 426 159341 31 3 0 6 1 4 105 chain 26081 chr3 198022430 + 137298259 137298559 L1PA7 6471 - 13 313 99704 300 chain 124423 chr3 198022430 + 137303978 137305542 THE1A-int 1579 - 0 1578 29564 9 1 2 18 0 1 230 0 7 331 0 1 259 22 23 41 0 3 476 1 2 6 1 0 169 chain 23940 chr3 198022430 + 137308371 137308662 AluSc 308 - 6 297 110687 291 chain 35269 chr3 198022430 + 137314442 137314883 LTR7 482 + 0 475 75832 224 0 1 38 1 32 10 0 1 59 1 2 108 chain 318204 chr3 198022430 + 137314892 137318570 HERVH-int 3825 + 0 3825 12662 333 1 0 48 1 0 96 0 114 12 7 1 14 1 38 41 1 0 58 0 1 11 0 2 9 0 1 164 1 0 1378 0 1 941 0 1 561 chain 36514 chr3 198022430 + 137319583 137320026 LTR7 482 + 0 476 74220 224 0 1 39 0 31 10 0 1 170 chain 24065 chr3 198022430 + 137341311 137341628 L1PA8 5853 + 5542 5853 109959 22 1 0 44 2 0 74 1 0 11 1 0 6 0 1 40 2 1 19 1 0 93 chain 557398 chr3 198022430 + 137352556 137358574 L1PA2 6032 - 2 6029 565 148 0 1 701 0 4 946 0 4 4223 chain 508470 chr3 198022430 + 137372752 137379284 L1PA7 6471 + 1 6470 6284 229 13 23 9 1 0 141 7 0 55 1 0 5 1 2 117 5 0 161 1 0 11 1 18 9 2 1 134 0 1 449 0 1 266 0 2 134 9 5 569 0 1 33 0 2 35 4 0 106 0 2 118 0 1 118 0 5 336 0 4 445 4 8 55 9 10 214 5 4 130 0 3 31 7 6 195 0 1 121 97 0 194 1 3 150 0 4 308 0 1 4 1 0 270 0 1 4 1 0 422 0 1 9 0 2 216 8 0 93 4 7 454 chain 2961 chr3 198022430 + 137377055 137377091 L1PA7 6471 + 4333 4368 225863 31 1 0 4 chain 538783 chr3 198022430 + 137379425 137385553 L1PA4 6152 + 2 6143 3027 944 0 3 352 0 1 3288 1 7 704 1 0 737 0 1 5 0 3 96 chain 50349 chr3 198022430 + 137397184 137397878 L1MA3 4352 + 1780 2470 58756 6 4 0 339 0 4 115 0 4 60 7 6 39 7 0 117 chain 37110 chr3 198022430 + 137398727 137399227 L1PA7 6471 + 5968 6467 73364 291 0 2 19 12 7 148 18 20 12 chain 7100 chr3 198022430 + 137400892 137401030 L1MA3 4352 + 4228 4352 176751 32 2 0 10 14 5 7 1 0 6 1 0 29 1 0 35 chain 21351 chr3 198022430 + 137430555 137430889 THE1B 368 - 30 368 122681 16 0 1 82 3 0 5 15 20 17 2 0 25 2 0 37 12 17 118 chain 22848 chr3 198022430 + 137431761 137432073 L1PA8 5853 + 5541 5851 116352 23 1 0 18 0 4 23 2 0 73 7 8 5 2 0 48 1 0 17 1 0 91 chain 10428 chr3 198022430 + 137442774 137442891 L1PA5 6144 + 6020 6137 158565 117 chain 23938 chr3 198022430 + 137444601 137444948 THE1A 353 - 0 353 110702 7 0 7 125 13 12 91 1 0 18 11 12 81 chain 26485 chr3 198022430 + 137446314 137446669 THE1A 353 - 0 353 98098 155 1 0 85 8 7 16 2 1 4 0 1 84 chain 17149 chr3 198022430 + 137450410 137450604 L1PA4 6152 - 11 205 135167 194 chain 156633 chr3 198022430 + 137450611 137452755 L1PB1 5432 - 1605 3780 23782 7 0 6 63 0 1 148 46 26 64 0 3 386 17 20 163 0 2 44 7 10 123 0 1 4 12 11 34 0 1 67 0 6 52 1 6 79 0 1 224 5 14 103 0 1 32 0 1 184 0 6 151 1 4 127 chain 526570 chr3 198022430 + 137469548 137475907 L1PA6 6164 + 0 6149 4539 10 0 1 305 0 4 909 0 1 216 0 1 50 1 0 230 0 1 485 0 2 563 2 3 409 0 1 780 0 2 1775 1 0 78 218 0 95 6 1 52 3 4 171 chain 23191 chr3 198022430 + 137478785 137479048 L1PA5 6144 + 5873 6140 114719 34 0 4 229 chain 6743 chr3 198022430 + 137503313 137503437 MER53 195 + 3 195 179370 31 17 83 11 1 0 4 2 5 58 chain 4871 chr3 198022430 + 137514324 137514405 MIRb 242 - 59 135 196576 38 15 10 28 chain 2285 chr3 198022430 + 137519096 137519165 MER21C 908 - 816 885 235524 19 13 14 16 10 9 11 chain 28042 chr3 198022430 + 137525773 137526069 AluYa5 310 - 14 310 92849 296 chain 6597 chr3 198022430 + 137538815 137538936 L1PB1 5432 + 5312 5424 180472 15 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 1 0 4 chain 62521 chr3 198022430 + 137546492 137547186 L1PA4 6152 - 22 713 51667 354 3 0 337 chain 60173 chr3 198022430 + 137547195 137547867 L1PA4 6152 + 4698 5370 52742 672 chain 10729 chr3 198022430 + 137555896 137556026 MLT1B 390 + 254 384 157285 130 chain 39457 chr3 198022430 + 137575489 137575959 L1PA7 6471 - 2 470 70078 17 1 0 321 1 0 130 chain 120377 chr3 198022430 + 137588238 137590611 L1M1 2793 + 524 2685 30912 9 1 0 9 2 1 13 89 63 16 80 24 43 101 79 16 48 47 49 18 15 95 1 0 49 0 2 125 2 1 18 11 10 42 4 0 18 7 0 7 1 0 104 0 12 118 3 0 9 0 11 10 1 0 184 0 4 66 0 1 98 1 0 4 1 8 80 5 8 47 1 0 16 0 1 11 3 8 28 3 2 17 0 1 82 18 21 36 5 4 10 0 1 5 11 17 92 0 8 41 1 0 76 197 56 56 1 0 49 1 0 8 chain 117401 chr3 198022430 + 137591015 137592383 SVA_C 1631 + 56 1631 31996 391 0 116 301 1 0 64 0 91 261 0 3 336 2 0 12 chain 163957 chr3 198022430 + 137592392 137594840 L1MA1 4479 + 1725 4151 22811 202 9 3 60 1 0 81 56 67 243 0 1 97 0 3 44 0 3 73 3 1 20 0 3 40 5 4 86 1 5 10 2 0 33 1 0 19 1 2 29 0 1 7 7 4 63 0 1 28 7 6 21 2 0 13 6 3 6 0 3 131 18 16 41 0 1 4 1 0 8 0 1 39 1 0 12 5 0 48 5 0 74 11 8 128 1 0 194 1 0 24 3 1 15 1 0 71 1 0 17 2 0 15 2 1 70 0 1 17 1 0 5 5 0 7 5 7 112 1 0 29 2 0 35 1 0 9 chain 25159 chr3 198022430 + 137595921 137596268 THE1B 368 + 0 368 103960 40 0 15 119 1 0 6 0 1 4 1 0 7 2 0 114 5 13 37 0 1 11 chain 97798 chr3 198022430 + 137596268 137597493 THE1B-int 1605 + 0 1250 37338 41 4 5 384 0 25 54 1 0 741 chain 129968 chr3 198022430 + 137602834 137604472 L1PA7 6471 - 1 1642 28095 158 3 4 97 0 1 589 1 0 402 15 31 104 0 1 57 31 16 181 chain 141947 chr3 198022430 + 137604472 137606156 L1PA7 6471 + 3147 4838 25833 279 1 2 1151 0 3 39 1 0 47 0 4 166 chain 528245 chr3 198022430 + 137615457 137621860 L1PA5 6144 + 0 6138 4378 1035 1 3 1046 0 1 1111 6 5 299 0 1 103 1 0 1423 1 0 103 0 1 166 0 4 19 0 13 329 300 0 301 6 22 153 chain 27505 chr3 198022430 + 137621106 137621397 AluYd8 298 + 0 291 94637 291 chain 63619 chr3 198022430 + 137621883 137622885 L1PREC2 3366 + 2030 2995 51179 293 0 1 308 1 3 112 7 5 45 11 10 39 54 42 13 10 5 15 3 1 14 53 35 24 chain 26792 chr3 198022430 + 137623495 137623783 L1HS 6032 + 5744 6032 97007 288 chain 410389 chr3 198022430 + 137627100 137632235 L1PA8A 6298 + 1137 6291 9788 585 0 1 320 0 1 57 0 5 45 0 12 194 0 1 151 0 1 60 2 1 54 11 1 121 0 10 672 10 0 276 15 15 93 0 4 61 0 1 12 3 2 7 0 4 418 2 3 483 13 11 335 13 16 299 0 4 16 2 1 83 1 0 69 0 1 364 4 0 284 chain 3575 chr3 198022430 + 137634402 137634443 MER33 330 - 271 312 214053 41 chain 124210 chr3 198022430 + 137634748 137636362 L1PA7 6471 - 17 1538 29621 338 2 0 26 0 1 159 1 0 220 2 0 5 0 2 82 2 1 281 91 0 118 0 1 287 chain 124217 chr3 198022430 + 137653851 137655442 L1PA8 5853 - 0 1587 29618 93 1 0 19 2 1 61 12 11 58 2 0 46 1 0 480 4 14 12 0 1 4 2 1 43 6 1 227 4 3 408 1 0 36 1 0 68 chain 174644 chr3 198022430 + 137672002 137674284 L1PA10 4194 - 33 2315 21522 11 1 0 34 33 30 4 1 0 187 16 24 97 12 1 130 0 1 167 10 11 17 0 2 402 0 1 86 1 0 66 3 0 5 0 3 118 0 1 106 1 0 33 0 1 10 0 1 273 0 1 159 0 1 299 chain 22398 chr3 198022430 + 137674284 137674550 L1PA10 4194 + 1608 1874 116896 266 chain 28376 chr3 198022430 + 137685143 137685650 L1PB1 5432 - 12 485 91676 16 1 0 12 1 0 22 1 0 15 34 29 15 12 4 7 2 0 5 1 0 14 2 1 43 6 5 13 1 0 50 2 0 10 2 0 3 2 0 12 1 0 6 1 0 24 3 0 12 5 4 151 chain 116135 chr3 198022430 + 137686481 137687763 L1PA3long 6157 - 0 1277 32402 140 7 0 326 0 2 809 chain 98662 chr3 198022430 + 137687763 137688850 L1PA3long 6157 + 3792 4878 37108 933 1 0 153 chain 108330 chr3 198022430 + 137695362 137697190 L1MA2 4263 - 123 1628 34608 11 2 0 13 14 11 47 7 0 16 0 14 62 1 0 9 2 1 147 3 0 147 1 0 20 0 1 50 2 0 7 2 0 17 4 0 151 4 5 82 0 1 84 5 12 194 0 1 134 0 1 16 320 0 119 0 3 62 5 0 49 0 2 7 3 0 9 chain 536438 chr3 198022430 + 137698707 137704791 L1PA5 6144 + 0 6137 3387 121 0 14 346 0 1 1626 0 1 465 0 2 1139 0 1 215 0 2 108 0 1 612 0 20 61 0 3 1199 0 8 192 chain 26732 chr3 198022430 + 137724084 137724424 L1PA7 6471 - 4 340 97216 6 4 0 94 0 4 55 2 1 168 3 0 8 chain 13620 chr3 198022430 + 137726007 137726168 L1PA8A 6298 + 5798 5959 145902 161 chain 28258 chr3 198022430 + 137726168 137726496 L1PA8A 6298 + 5963 6290 92087 222 1 0 105 chain 28753 chr3 198022430 + 137737177 137737477 AluYa5 310 - 10 310 90100 300 chain 122942 chr3 198022430 + 137793494 137795738 L1PB1 5432 + 1316 5422 30069 78 2 3 12 2 1 166 3 0 43 2 1 625 1 0 6 1 2 8 0 1 103 464 2356 177 0 2 201 15 13 24 1 0 4 22 17 9 2 0 25 0 4 23 2 1 16 1 0 44 1 0 13 25 13 19 3 1 5 1 0 12 5 3 23 1 0 22 1 0 12 1 0 18 chain 22383 chr3 198022430 + 137803665 137803918 L1PA3long 6157 - 1196 1443 118572 178 6 0 69 chain 108263 chr3 198022430 + 137803918 137805107 L1PA3long 6157 + 4966 6155 34627 1189 chain 114500 chr3 198022430 + 137811570 137813112 Tigger1 2417 - 550 2305 32947 79 0 2 472 1 0 22 1 3 44 0 9 186 0 20 19 0 3 43 9 12 87 1 0 31 0 1 201 0 2 5 2 0 31 1 5 23 0 4 103 0 165 21 4 6 156 chain 11870 chr3 198022430 + 137818097 137818264 MER30 238 + 51 237 152741 31 0 7 18 5 20 63 3 0 47 chain 7195 chr3 198022430 + 137827711 137827798 MER5A 189 + 0 99 176106 72 0 12 15 chain 44204 chr3 198022430 + 137828350 137828924 L1PA8 5853 + 5243 5853 63940 321 2 1 43 2 0 75 21 58 19 1 0 28 0 3 62 chain 24620 chr3 198022430 + 137829006 137829301 L1PA6 6164 + 5868 6162 106889 234 1 0 60 chain 22623 chr3 198022430 + 137862281 137862561 AluSp 311 + 8 287 117471 117 1 0 162 chain 24384 chr3 198022430 + 137913845 137914147 AluYb8 318 + 11 309 108175 52 2 0 60 1 0 9 1 0 177 chain 2829 chr3 198022430 + 137944252 137944287 L1MA4 2864 - 63 98 228223 35 chain 24473 chr3 198022430 + 137994128 137994413 AluYk4 311 + 11 294 107689 107 2 0 176 chain 24459 chr3 198022430 + 138052164 138052458 AluY 311 + 0 288 107758 28 4 0 105 2 0 155 chain 12495 chr3 198022430 + 138097879 138098193 L1MA4 2864 - 55 333 150264 28 150 114 136 chain 38877 chr3 198022430 + 138128734 138129263 MER41A 554 - 8 554 70904 294 1 2 33 12 22 116 0 8 28 2 1 38 1 0 4 chain 16388 chr3 198022430 + 138134825 138135413 MER65C 458 - 0 368 137242 13 3 1 31 0 2 28 23 36 39 1 0 6 291 62 16 3 0 7 0 3 62 10 7 55 chain 3633 chr3 198022430 + 138138465 138138521 LTR56 451 - 137 195 213105 13 3 4 19 0 1 21 chain 25553 chr3 198022430 + 138140216 138140549 MER4D1 891 - 558 891 101968 18 1 0 36 1 2 277 chain 17722 chr3 198022430 + 138142222 138142530 LTR23 429 + 0 290 133640 18 0 9 7 9 0 57 27 0 7 10 23 44 1 0 27 1 0 15 3 0 70 1 2 11 chain 42974 chr3 198022430 + 138144047 138144595 MER41A 554 - 0 554 65445 145 0 4 6 4 5 79 0 1 314 chain 16821 chr3 198022430 + 138175426 138175662 MER1B 344 + 100 339 136060 65 1 2 95 6 9 11 1 0 57 chain 21726 chr3 198022430 + 138194497 138194775 AluSp 311 + 10 290 121299 122 2 0 57 6 9 65 0 1 26 chain 8479 chr3 198022430 + 138202779 138203315 L1MA2 4263 - 205 743 36793 81 1 11 8 1 0 9 2 1 134 15 12 140 1 0 28 6 5 4 0 1 35 6 9 10 1 0 18 9 5 27 chain 135941 chr3 198022430 + 138203315 138204932 LTR12C 1709 + 0 1709 26846 202 9 16 490 0 1 27 0 78 23 1 0 70 5 7 198 1 0 5 3 1 106 0 4 450 0 4 27 chain 80052 chr3 198022430 + 138204953 138206119 MER11A 1151 - 4 1151 43565 32 0 4 28 0 10 101 0 1 110 138 0 25 2 1 145 6 7 309 0 2 44 0 2 30 9 5 60 7 11 42 0 99 22 0 1 56 chain 4358 chr3 198022430 + 138205254 138205307 MER11A 1151 - 290 342 202470 22 1 0 30 chain 22337 chr3 198022430 + 138207685 138209097 L1MA2 4263 - 1657 2909 36793 47 10 17 37 0 5 4 1 0 58 0 6 28 0 3 5 17 23 143 6 0 180 10 15 9 0 1 58 217 0 14 0 4 143 8 13 16 18 21 8 0 1 26 3 0 139 0 2 22 3 14 29 1 0 9 5 7 16 0 1 39 1 0 4 17 18 13 0 6 48 chain 6432 chr3 198022430 + 138229553 138229688 MER44C 733 - 0 136 181767 29 3 0 18 36 40 49 chain 544566 chr3 198022430 + 138236539 138244260 L1PA4 6152 + 1 6152 2130 3069 1539 0 113 1 0 1220 0 1 784 37 0 114 1 0 820 0 6 15 0 1 8 chain 111551 chr3 198022430 + 138239621 138241142 SVA_B 1603 + 8 1603 33794 14 47 2 15 7 36 356 116 0 240 0 3 57 6 6 14 2 39 33 0 167 12 1 0 308 0 2 285 2 0 6 chain 2575 chr3 198022430 + 138240079 138240176 SVA_B 1603 + 799 1024 199415 14 49 177 34 chain 7814 chr3 198022430 + 138263144 138263345 L1MA4 2864 + 2137 2341 172218 25 78 74 73 0 10 15 3 0 7 chain 87549 chr3 198022430 + 138264020 138265111 MER11A 1151 + 0 1147 40551 79 0 8 141 1 0 66 0 11 377 6 9 171 0 32 100 10 13 69 0 1 8 8 7 55 chain 266931 chr3 198022430 + 138269508 138275086 L1PB1 5432 + 594 5281 15339 7 1 0 35 1 5 115 0 1 89 0 1 134 2 5 130 5 6 92 0 4 10 0 2 71 0 1 102 314 5 135 0 4 92 0 3 67 2 0 784 6 1 91 0 1 4 5 7 134 12 14 60 334 36 49 0 3 365 972 974 77 299 0 23 9 0 15 0 1 93 0 4 71 1 10 100 2 0 167 8 0 10 3 11 178 40 35 75 13 11 24 2 1 8 1 0 10 16 10 46 6 8 15 1 0 45 chain 89226 chr3 198022430 + 138275421 138276467 MER11C 1089 - 26 1089 39917 109 0 2 173 0 1 39 1 2 45 0 4 433 0 9 246 chain 519241 chr3 198022430 + 138278905 138285670 L1PA7 6471 + 0 6469 5236 45 1 0 363 9 0 239 8 11 276 20 0 462 2 5 243 313 0 274 6 3 20 6 5 115 3 2 100 5 10 301 1 2 43 0 2 120 2 0 63 0 4 36 0 3 59 2 1 201 0 3 365 0 1 107 1 2 5 1 0 6 1 0 363 1 2 473 0 1 340 1 3 276 1 0 61 0 7 51 0 1 253 0 14 107 0 1 172 2 0 306 3 0 84 0 4 120 0 1 20 0 14 286 9 0 12 chain 14313 chr3 198022430 + 138289447 138289663 Tigger4a 237 - 13 237 143517 40 4 5 127 0 1 5 1 0 5 6 13 28 chain 250214 chr3 198022430 + 138292816 138295763 L1P2 5180 + 2 2962 16236 137 11 10 98 4 3 257 1 0 8 1 0 268 0 15 649 0 2 1513 chain 36317 chr3 198022430 + 138295773 138296185 L1PA5 6144 + 5720 6135 74483 383 0 3 29 chain 3750 chr3 198022430 + 138303745 138303822 L1MA2 4263 + 1506 1583 211131 27 25 25 25 chain 36929 chr3 198022430 + 138316255 138316737 LTR2B 499 - 0 499 73617 180 1 0 10 0 1 175 7 26 33 3 0 61 0 1 12 chain 24637 chr3 198022430 + 138320559 138320912 THE1A 353 + 0 353 106799 35 9 10 60 16 15 107 1 2 5 1 0 119 chain 113623 chr3 198022430 + 138320912 138323084 THE1A-int 1579 + 0 1579 33197 100 0 23 983 4 9 15 0 1 11 16 17 118 749 123 39 0 1 28 1 3 108 chain 11801 chr3 198022430 + 138322468 138322610 THE1A-int 1579 - 167 306 153043 34 3 0 105 chain 3983 chr3 198022430 + 138343549 138343616 MIR 256 + 72 144 207637 10 0 3 21 8 10 28 chain 24838 chr3 198022430 + 138358738 138359031 AluY 311 + 7 305 105680 57 0 3 65 0 1 61 0 1 110 chain 166268 chr3 198022430 + 138365714 138367604 L1PA5 6144 - 1 1902 22488 10 3 1 416 0 1 413 1 5 762 0 3 135 0 1 51 0 4 99 chain 71928 chr3 198022430 + 138380972 138381757 L1PA3long 6157 - 17 802 47513 785 chain 31582 chr3 198022430 + 138381757 138382102 L1PA3long 6157 + 5002 5347 81225 345 chain 37458 chr3 198022430 + 138390493 138391004 LTR10D 510 - 0 510 72881 235 5 6 22 8 7 145 2 0 17 5 0 7 18 24 47 chain 23064 chr3 198022430 + 138398934 138399209 AluSg 306 + 15 292 115328 258 0 2 17 chain 26354 chr3 198022430 + 138430138 138430447 AluSp 311 + 0 308 98594 44 1 0 264 chain 23791 chr3 198022430 + 138437340 138437759 L1PA14 3548 - 120 493 111525 14 1 0 16 1 0 5 1 0 15 4 2 35 14 9 53 28 0 58 1 0 84 1 0 5 3 1 13 12 8 55 chain 22008 chr3 198022430 + 138458027 138458290 AluSc5 308 + 22 286 120197 159 0 1 104 chain 7197 chr3 198022430 + 138459238 138459317 MLT1A0 366 + 287 366 176087 79 chain 20245 chr3 198022430 + 138464483 138464806 Tigger2 2703 - 1204 1546 126399 37 1 2 89 0 2 5 1 0 30 25 31 22 4 12 36 0 4 29 1 0 43 chain 13455 chr3 198022430 + 138469207 138469439 MER1B 344 - 78 296 146504 56 16 12 36 15 6 64 12 11 33 chain 112713 chr3 198022430 + 138503239 138504679 SVA_B 1603 + 6 1603 33475 15 37 20 427 0 2 24 0 193 239 4 0 37 4 0 13 1 0 14 46 0 19 1 0 24 5 42 99 0 2 279 6 2 146 chain 7329 chr3 198022430 + 138511089 138511189 MER2 342 + 88 189 175237 27 1 0 27 0 2 45 chain 35031 chr3 198022430 + 138565828 138566279 MER41A 554 + 1 439 76145 86 5 6 14 4 0 199 10 0 133 chain 20771 chr3 198022430 + 138584991 138585261 AluY 311 + 0 286 124710 52 10 24 55 1 3 152 chain 22413 chr3 198022430 + 138592123 138592427 AluSp 311 + 0 300 118419 52 19 16 106 1 0 126 chain 39907 chr3 198022430 + 138592490 138593074 LTR10E 629 + 0 599 69447 78 3 1 79 19 16 97 0 26 27 1 0 8 0 1 5 1 0 38 1 0 157 1 0 11 29 26 29 chain 5672 chr3 198022430 + 138627786 138627887 MER20 218 + 41 142 188374 40 19 20 33 1 0 8 chain 17264 chr3 198022430 + 138637544 138637762 AluY 311 + 82 301 134882 45 1 2 172 chain 14190 chr3 198022430 + 138720595 138721005 L1MA7 2200 - 127 509 143919 22 12 1 48 106 87 35 24 28 23 1 0 59 13 13 29 18 17 20 chain 82835 chr3 198022430 + 138725811 138727073 L1MA3 4352 - 0 1247 42405 22 6 2 15 1 0 23 13 11 19 2 0 81 1 0 45 61 40 43 6 10 395 8 7 104 0 3 151 2 0 67 15 26 17 0 1 165 chain 9273 chr3 198022430 + 138727552 138727679 L1MA2 4263 + 3973 4093 164198 85 7 0 35 chain 25689 chr3 198022430 + 138741558 138741851 AluSq10 312 - 9 302 101338 293 chain 29128 chr3 198022430 + 138742552 138742885 L1PA5 6144 - 12 345 88416 333 chain 350938 chr3 198022430 + 138745472 138749698 L1PA5 6144 - 6 4066 11570 15 1 0 312 0 1 501 0 1 7 0 4 638 0 1 35 0 1 360 0 1 286 177 1 42 0 1 256 3 0 452 4 8 49 1 2 855 1 0 231 chain 11478 chr3 198022430 + 138747630 138747770 L1PA5 6144 + 2840 2980 154383 140 chain 22666 chr3 198022430 + 138760476 138760748 L1PA7 6471 + 6195 6467 117241 272 chain 51022 chr3 198022430 + 138770314 138770888 L1PA3long 6157 - 0 572 58294 15 3 0 129 1 2 426 chain 49042 chr3 198022430 + 138778484 138779236 L1PA11 4918 - 289 1008 59716 18 47 33 11 2 0 13 1 0 15 44 31 20 1 0 16 2 0 78 2 1 238 0 1 244 chain 115148 chr3 198022430 + 138785948 138787199 L1PA2 6032 - 0 1252 32738 261 0 1 990 chain 21635 chr3 198022430 + 138787199 138787442 L1P1 4361 + 3533 3776 121303 243 chain 5292 chr3 198022430 + 138807104 138807203 MER52A 1651 - 738 872 192100 15 23 59 49 1 0 11 chain 14026 chr3 198022430 + 138835345 138835535 Tigger3b 1229 - 679 885 144479 29 18 34 143 chain 23888 chr3 198022430 + 138835554 138835841 AluSg7 307 - 21 307 110973 154 1 0 132 chain 429654 chr3 198022430 + 138862425 138867170 L1PA3long 6157 - 0 6151 9317 7 0 1 139 0 1 1284 1 0 780 0 1 270 7 1410 637 0 1 1620 chain 3796 chr3 198022430 + 138868813 138868861 L1MD2 1676 + 1210 1258 210442 48 chain 35002 chr3 198022430 + 138881279 138881870 MER4A1_ 611 - 9 611 76188 4 1 0 183 29 34 31 84 91 49 3 0 83 8 10 73 0 1 43 chain 7053 chr3 198022430 + 138882614 138882985 L1MC5 759 - 165 562 177078 50 251 267 12 3 12 31 0 1 24 chain 511926 chr3 198022430 + 138885329 138891387 L1PA6 6164 - 2 6109 5984 138 0 9 10 17 12 93 0 9 64 0 1 413 0 1 97 1 0 1064 0 1 281 1 2 1641 0 1 151 0 1 329 0 1 172 0 2 581 0 1 129 1 26 30 1 2 82 5 6 302 2 1 313 5 6 135 chain 4706 chr3 198022430 + 138893857 138893918 MER20 218 + 31 91 198425 36 1 0 24 chain 24868 chr3 198022430 + 138908443 138909471 Tigger1 2417 - 1236 1724 105529 71 261 2 30 10 6 31 397 107 146 6 19 76 chain 547548 chr3 198022430 + 138909489 138915607 L1PA4 6152 - 1 6151 1761 296 1 0 164 0 8 705 1 0 1296 1 0 813 1 0 1234 1 0 1103 0 35 35 20 14 447 chain 51513 chr3 198022430 + 138928901 138929479 L1PA4 6152 - 0 583 57957 6 0 5 572 chain 48162 chr3 198022430 + 138931618 138932197 LTR66 600 + 0 578 60351 411 3 1 44 0 1 121 chain 23586 chr3 198022430 + 138989498 138989866 THE1D 372 + 0 372 112656 160 0 1 8 24 25 27 13 7 10 6 12 70 0 3 17 1 0 32 chain 347526 chr3 198022430 + 139051781 139055622 L1PA2 6032 + 2192 6032 11683 9 7 0 371 0 5 172 1 0 790 0 1 278 0 1 2213 chain 8007 chr3 198022430 + 139089028 139089129 MER44B 551 - 1 104 171011 37 0 2 64 chain 6480 chr3 198022430 + 139107118 139107206 U6 107 + 0 107 181386 22 1 20 65 chain 33072 chr3 198022430 + 139120839 139121303 L1PREC2 3366 - 512 972 79095 4 1 0 44 8 7 49 1 0 5 1 0 4 0 1 144 11 9 100 0 1 92 chain 44155 chr3 198022430 + 139121691 139123386 L1PB2 3958 - 120 1772 15595 63 1 0 20 2 0 56 3 0 20 1 0 41 1 0 4 0 1 18 1 0 163 4 0 13 2 0 44 0 1 17 6 0 16 8 7 33 16 14 14 0 1 33 1 2 333 1 0 184 1 0 22 35 15 222 1 0 4 2 0 108 0 2 181 chain 525481 chr3 198022430 + 139123406 139129567 L1PA6 6164 + 0 6149 4630 28 6 5 192 1 2 9 0 2 280 0 2 47 1 0 1037 19 1 728 3 5 168 0 1 33 3 0 624 0 2 5 8 6 8 2 0 712 1 0 56 1 2 1229 0 1 133 0 4 827 chain 55878 chr3 198022430 + 139129599 139131744 L1PB2 3958 - 1772 3888 15595 47 0 1 112 1 2 155 2 0 99 3 8 180 5 0 108 0 3 225 7 0 204 39 38 51 2 0 7 4 0 125 5 13 347 6 4 153 9 13 8 8 0 54 5 2 47 24 19 23 3 1 29 9 4 20 5 0 14 chain 39195 chr3 198022430 + 139205040 139205858 L1PB3 3668 - 48 675 70464 8 1 0 13 9 6 11 2 1 12 7 3 37 3 1 16 4 5 4 1 0 21 185 4 87 7 6 67 11 12 16 1 0 101 2 0 149 0 5 13 0 1 15 2 0 13 chain 31334 chr3 198022430 + 139205889 139206251 L1PA3long 6157 - 0 362 81924 138 0 7 9 7 0 208 chain 546515 chr3 198022430 + 139284206 139290327 L1PA4 6152 - 1 6140 1883 615 0 1 1175 0 4 460 0 19 707 1 0 153 0 1 2276 0 1 117 0 1 14 1 0 31 1 0 109 13 7 448 chain 20531 chr3 198022430 + 139303047 139303287 7SK 245 - 4 245 125538 156 0 1 84 chain 4396 chr3 198022430 + 139308475 139308647 MER58C 217 - 31 206 201991 40 106 109 26 chain 455605 chr3 198022430 + 139309798 139314877 L1HS 6032 + 1 5092 8553 2295 0 5 63 0 4 1435 0 1 360 0 1 347 0 1 579 chain 5553 chr3 198022430 + 139325448 139325905 L1MC4a 1092 - 588 1017 189540 15 14 15 20 20 14 14 295 282 22 1 0 31 9 0 16 chain 124796 chr3 198022430 + 139331594 139332989 L1PA4 6152 + 4758 6152 29449 1140 1 0 7 1 0 133 0 1 113 chain 4173 chr3 198022430 + 139341231 139341292 Tigger3b 1229 - 224 285 204944 4 0 1 38 2 1 17 chain 3035 chr3 198022430 + 139352321 139352392 MLT1D 503 + 435 494 224295 23 25 13 23 chain 13962 chr3 198022430 + 139398508 139398817 L1PB1 5432 + 5134 5417 144698 12 1 0 12 6 3 8 2 0 51 2 1 10 2 5 45 1 0 15 4 0 7 18 9 15 2 0 4 1 0 15 2 0 22 12 11 12 1 0 13 1 0 13 chain 17197 chr3 198022430 + 139438177 139438487 Tigger3a 397 - 70 381 135046 209 84 85 17 chain 28489 chr3 198022430 + 139457130 139457583 MLT2A1 477 + 0 468 91234 96 0 1 43 0 1 28 0 4 92 5 9 21 1 7 21 1 0 57 55 55 33 chain 15507 chr3 198022430 + 139467401 139467624 MER30 238 - 0 238 139868 43 3 0 57 2 0 7 4 24 107 chain 2793 chr3 198022430 + 139471088 139471118 L1MA4 2864 - 59 89 228821 30 chain 14017 chr3 198022430 + 139488012 139488220 L1PA8 5853 + 5647 5853 144516 32 18 16 45 2 1 19 1 0 68 0 2 23 chain 50826 chr3 198022430 + 139518053 139518623 L1PA3long 6157 - 0 570 58417 570 chain 222264 chr3 198022430 + 139518623 139521072 L1PA3long 6157 + 3126 5575 17741 2449 chain 138934 chr3 198022430 + 139535925 139537571 L1PA5 6144 - 3855 5494 26298 473 0 1 444 0 1 199 9 0 118 1 0 313 0 1 89 chain 335046 chr3 198022430 + 139537571 139541417 L1PA5 6144 + 2286 6142 12026 28 0 1 1026 11 17 1422 1 8 1347 4 0 7 chain 42288 chr3 198022430 + 139545715 139546189 L1PA4 6152 - 12 486 66284 474 chain 158674 chr3 198022430 + 139561582 139563520 L1PA8A 6298 - 7 1959 23509 101 6 0 6 1 8 80 0 2 521 1 0 83 5 16 109 0 3 482 9 6 397 0 1 137 chain 517630 chr3 198022430 + 139596309 139602418 L1PA6 6164 - 2 6164 5409 8 0 7 826 0 6 22 0 1 169 0 15 500 1 2 189 0 2 167 0 1 219 0 1 329 0 2 265 0 1 272 18 0 892 1 0 435 0 1 567 0 14 342 0 4 79 0 17 342 1 0 465 chain 61758 chr3 198022430 + 139630324 139631077 L1PA8 5853 - 0 746 52012 78 16 15 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 457 chain 26640 chr3 198022430 + 139634497 139634796 L1PA3long 6157 - 0 299 97512 299 chain 23265 chr3 198022430 + 139639079 139639341 AluYa5 310 - 12 272 114362 61 3 1 198 chain 136659 chr3 198022430 + 139720731 139722681 L1MA2 4263 - 123 2145 26700 12 2 1 12 4 2 9 1 0 40 24 17 82 14 62 30 0 5 41 2 1 20 17 19 83 0 3 39 1 0 78 2 0 299 2 0 104 0 2 21 2 0 249 1 2 137 0 3 17 0 7 97 7 5 109 0 1 16 7 25 156 0 4 6 4 2 86 9 10 108 chain 3554 chr3 198022430 + 139735297 139735356 Tigger2b_Pri 1066 + 54 112 214478 20 7 6 32 chain 27080 chr3 198022430 + 139756902 139757456 L1PA11 4918 - 289 807 96002 18 19 13 5 1 0 8 1 0 5 21 13 13 1 0 15 49 36 15 2 1 13 2 0 17 5 4 49 20 17 31 9 11 14 1 0 220 chain 379085 chr3 198022430 + 139761376 139765626 L1PA5 6144 - 9 4273 10785 1498 4 0 1287 3 9 145 1 0 64 0 8 464 1 2 95 0 4 688 chain 3455 chr3 198022430 + 139769563 139769611 LTR33 499 - 408 451 216086 31 5 0 12 chain 35543 chr3 198022430 + 139808697 139809220 LTR19A 502 - 0 502 75484 70 3 1 30 43 20 7 0 2 329 8 10 33 chain 9673 chr3 198022430 + 139873797 139873918 THE1D 372 - 249 371 162229 20 1 2 100 chain 5216 chr3 198022430 + 139875719 139875785 LTR16B2 458 + 392 458 192872 66 chain 13732 chr3 198022430 + 139876640 139876812 L1PA16 3655 + 1379 1551 145501 172 chain 2856 chr3 198022430 + 139876813 139876843 U2 167 - 137 167 227725 30 chain 119995 chr3 198022430 + 139891809 139893372 THE1A-int 1579 - 6 1579 31063 11 1 0 81 1 2 381 4 5 8 0 1 396 52 58 30 1 0 23 0 1 293 0 2 281 chain 41226 chr3 198022430 + 139940359 139941025 L1MA2 4263 + 3449 4114 67613 26 1 3 20 1 0 24 1 0 53 14 10 77 1 0 87 7 23 30 3 0 150 22 20 82 14 7 12 1 2 29 1 0 10 chain 12486 chr3 198022430 + 139992029 139992218 L1PA8 5853 + 5667 5853 150315 14 2 1 11 1 0 47 2 1 19 1 0 75 2 3 15 chain 27104 chr3 198022430 + 140025756 140026110 THE1B 368 + 0 368 95931 44 0 15 110 5 4 27 2 0 123 0 2 43 chain 41788 chr3 198022430 + 140044342 140044859 LTR10C 591 + 0 591 66916 13 1 0 93 0 72 75 5 4 69 0 2 182 0 2 79 chain 28337 chr3 198022430 + 140072106 140072484 MLT2A1 477 - 96 477 91813 40 9 8 159 1 5 28 0 1 7 1 0 133 chain 2916 chr3 198022430 + 140086046 140086078 U2 167 - 135 167 226746 32 chain 23927 chr3 198022430 + 140086082 140086376 AluSc 308 + 8 302 110766 294 chain 37450 chr3 198022430 + 140142423 140142932 LTR10D 510 + 0 510 72890 71 8 7 12 2 4 52 0 1 82 2 0 5 6 9 176 2 0 91 chain 23708 chr3 198022430 + 140154802 140155200 L1MA1 4479 - 348 724 111992 26 2 0 27 1 0 79 17 10 34 19 11 29 9 8 48 1 0 13 2 0 7 0 1 12 1 0 71 chain 5950 chr3 198022430 + 140192915 140192982 MLT1D 503 + 435 502 185677 67 chain 535134 chr3 198022430 + 140198795 140204935 L1PA4 6152 - 0 6151 3576 148 1 8 386 1 0 31 0 1 949 1 0 784 0 1 154 1 5 92 0 2 1270 28 8 58 0 1 312 1 0 526 0 4 458 0 4 656 3 0 153 7 20 120 chain 124092 chr3 198022430 + 140213884 140215538 L1PA11 4918 - 340 1970 29668 11 2 0 13 1 0 12 62 43 6 0 5 14 2 0 45 4 0 18 7 4 13 7 6 51 0 3 10 1 0 320 2 1 490 1 0 4 0 1 346 0 1 143 0 1 69 chain 169434 chr3 198022430 + 140230650 140232962 L1PA11 4918 - 414 2767 22127 16 1 0 19 2 0 62 3 0 13 2 1 56 7 6 136 0 3 49 4 0 135 9 31 157 0 2 7 1 0 86 0 1 33 0 1 29 0 1 444 0 4 14 1 2 34 0 1 448 33 6 256 0 41 17 7 6 105 0 1 7 10 14 24 2 3 25 1 0 57 chain 38377 chr3 198022430 + 140233003 140233688 L1PB1 5432 - 10 665 71603 17 2 1 12 1 0 23 1 0 21 2 0 16 9 6 18 3 15 13 1 0 44 1 0 15 2 1 52 2 0 9 5 1 14 3 2 8 1 0 17 36 19 87 0 1 181 8 0 16 1 0 6 14 16 24 chain 6380 chr3 198022430 + 140291471 140291604 MER5A 189 + 40 189 182175 73 40 56 20 chain 15616 chr3 198022430 + 140314642 140315039 L1MC1 2226 - 123 507 139531 16 52 50 28 1 0 4 1 2 11 17 12 13 9 13 40 1 0 10 23 17 32 1 0 7 23 21 108 chain 87323 chr3 198022430 + 140336995 140338381 L1PB1 5432 + 4065 5422 40637 39 0 1 99 0 2 245 0 6 6 14 8 60 0 1 62 11 15 19 3 0 67 1 6 54 5 8 49 0 1 3 6 0 26 1 0 36 5 0 216 22 20 24 1 0 5 23 18 7 2 0 52 2 1 10 6 5 17 0 1 27 1 0 8 30 19 16 13 10 11 2 0 25 1 0 22 1 0 12 1 0 18 chain 324838 chr3 198022430 + 140341573 140345314 L1P1 4361 + 570 4341 12398 154 2 3 409 0 2 285 0 2 111 0 2 956 0 10 457 0 6 7 1 2 715 0 9 450 1 0 155 1 0 23 2 1 12 chain 10274 chr3 198022430 + 140352049 140352390 MLT1C 463 + 32 401 159260 58 46 42 57 5 3 16 131 165 28 chain 100545 chr3 198022430 + 140359499 140361002 L1PA14 3548 - 67 1548 36617 16 1 0 10 6 0 39 2 1 17 1 0 5 1 0 15 4 2 27 11 7 11 8 7 20 6 1 82 1 0 84 1 0 6 3 1 12 8 4 100 15 16 35 16 14 10 3 1 250 1 0 16 0 1 135 1 0 250 0 3 120 0 8 55 34 35 65 chain 85028 chr3 198022430 + 140361012 140361953 L1PA3long 6157 + 5216 6157 41503 125 3 0 155 0 3 658 chain 109136 chr3 198022430 + 140362460 140363774 L1PA7 6471 - 1 1318 34406 169 1 3 76 1 0 4 0 1 502 0 3 91 2 0 468 chain 118412 chr3 198022430 + 140370083 140371634 LTR12C 1709 + 0 1709 31642 122 0 1 5 1 0 172 1 2 36 0 43 83 21 10 245 0 118 234 0 47 89 24 0 17 11 4 12 8 0 387 1 0 82 chain 16146 chr3 198022430 + 140374068 140374307 L1M1 2793 + 1751 1999 137910 38 3 1 82 16 27 100 chain 326620 chr3 198022430 + 140375760 140380384 L1PA11 4918 + 16 4580 12319 23 5 3 36 4 1 36 1 0 15 5 3 26 6 0 7 0 6 5 7 6 30 2 0 5 2 1 36 0 3 123 16 7 35 1 0 51 0 2 112 0 1 94 0 1 60 3 0 173 1 0 112 1 2 97 19 20 210 1 0 4 0 1 43 4 3 63 0 4 81 5 0 70 9 13 63 0 1 43 1 2 64 4 1 47 0 1 9 2 7 299 5 0 25 26 18 21 1 0 393 11 9 322 0 1 26 0 3 241 4 0 69 1 2 76 0 4 33 7 8 50 11 12 29 0 2 145 2 0 417 21 0 230 0 4 11 6 0 67 1 0 7 2 0 65 0 1 4 6 4 12 1 0 4 0 3 11 63 49 12 2 0 13 chain 380036 chr3 198022430 + 140383061 140388742 L1PB1 5432 + 78 5420 10753 278 0 1 92 2 1 92 4 3 45 18 18 15 22 23 165 38 26 182 5 6 7 1 0 29 1 15 49 27 30 92 0 4 119 12 15 11 12 41 72 302 0 198 0 3 545 1 0 6 4 0 89 10 4 397 1 6 172 0 4 75 1 0 274 0 2 15 2 1 186 15 19 56 0 1 36 3 0 113 11 10 359 0 1 124 0 2 77 0 3 236 0 1 85 0 4 16 3 6 73 2 0 89 1 9 79 3 1 51 6 10 41 25 1 114 61 15 29 17 12 10 3 1 50 2 1 15 1 0 28 1 0 16 1 0 16 14 1 24 30 25 24 1 0 21 1 0 13 1 0 16 chain 149258 chr3 198022430 + 140390243 140392450 L1PA8 5853 + 3959 5853 24721 20 1 4 121 340 0 138 0 4 88 1 0 35 0 3 420 1 2 213 0 2 299 0 2 73 0 1 180 1 0 41 8 6 28 0 17 23 1 0 8 2 0 5 7 9 59 1 0 93 chain 28462 chr3 198022430 + 140390402 140390724 AluYa5 310 + 0 310 91329 126 12 0 184 chain 65522 chr3 198022430 + 140392476 140393213 L1PA4 6152 - 0 737 50332 737 chain 8389 chr3 198022430 + 140404270 140404381 MER5A1 166 + 7 117 168914 106 1 0 4 chain 4139 chr3 198022430 + 140408290 140408355 MER5A1 166 - 33 99 205382 43 6 7 16 chain 14588 chr3 198022430 + 140478667 140478836 L1PA4 6152 - 9 177 142634 4 1 0 164 chain 25404 chr3 198022430 + 140480094 140480446 THE1A 353 - 0 346 102663 18 3 0 5 0 3 11 19 14 191 5 4 100 chain 119066 chr3 198022430 + 140494024 140495606 THE1B-int 1605 - 0 1605 31384 385 4 5 11 7 8 138 11 4 33 0 1 501 16 16 22 6 9 16 1 26 63 12 8 78 9 12 269 chain 27877 chr3 198022430 + 140495606 140495979 THE1B 368 - 0 368 93430 124 7 0 44 2 0 143 0 1 11 0 5 27 2 0 13 chain 22326 chr3 198022430 + 140500000 140500353 MSTA 426 + 47 405 118795 106 4 0 60 36 37 50 10 18 87 chain 2020 chr3 198022430 + 140505611 140505641 L1PB1 5432 + 5117 5147 238421 14 0 1 6 1 0 9 chain 8221 chr3 198022430 + 140505657 140505784 L1PB1 5432 + 5158 5281 169828 11 2 0 51 3 2 15 2 1 43 chain 5538 chr3 198022430 + 140505851 140505945 L1PB1 5432 + 5332 5424 189677 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 11443 chr3 198022430 + 140514667 140514795 L1PA3long 6157 + 6028 6156 154525 128 chain 12480 chr3 198022430 + 140515158 140515728 L1PB1 5432 - 21 551 16142 7 1 0 8 0 12 14 1 0 16 10 8 14 1 0 5 3 1 17 29 18 11 1 0 44 18 16 42 11 9 10 8 4 11 8 6 23 11 0 12 11 0 8 12 13 88 25 23 90 chain 528462 chr3 198022430 + 140516079 140522586 L1PA7 6471 - 10 6471 4357 101 0 4 31 0 1 10 1 0 224 0 1 465 1 4 17 26 0 497 0 1 86 11 0 389 0 1 587 17 13 531 1 0 517 0 2 3 0 5 732 0 10 13 33 0 79 1 0 380 2 0 202 2 1 125 5 6 138 0 1 21 0 1 503 5 6 346 1 2 320 0 1 84 chain 85917 chr3 198022430 + 140522725 140526649 L1PB1 5432 - 627 4022 16142 184 3 0 133 0 1 35 3 7 158 0 3 254 40 14 53 0 1 366 0 3 107 0 1 164 14 7 62 44 16 25 0 1 39 39 40 52 13 7 230 3 0 6 11 12 5 1 0 37 523 12 6 0 3 174 0 5 90 1 0 325 6 5 4 0 1 178 7 39 346 14 15 169 chain 59294 chr3 198022430 + 140579931 140580775 L1PA13 3608 + 2652 3485 53229 330 0 1 18 0 1 130 1 0 28 1 0 107 12 10 59 1 0 55 8 5 40 18 14 16 1 0 19 chain 3704 chr3 198022430 + 140582170 140582212 MSTB 430 + 388 430 211881 42 chain 67276 chr3 198022430 + 140590856 140591724 LTR12 884 + 0 884 49534 115 0 25 29 37 0 12 0 25 172 3 1 127 0 5 373 chain 3133 chr3 198022430 + 140591004 140591037 LTR12 884 + 29 62 200135 33 chain 320892 chr3 198022430 + 140591752 140595647 HERV9-int 5642 + 0 4824 12564 597 9 8 9 5 0 116 5 4 62 2 1 20 2 3 287 3 0 1453 1 10 440 7 942 129 8 0 221 12 13 486 1 2 9 0 1 11 chain 61203 chr3 198022430 + 140597211 140597968 LTR12 884 + 0 884 52252 74 0 132 172 3 1 365 4 1 139 chain 146609 chr3 198022430 + 140600029 140601786 L1PA7 6471 + 4690 6466 25071 32 1 0 96 0 1 6 2 0 121 0 3 100 0 13 9 0 1 946 1 0 206 0 3 70 0 1 44 0 1 123 chain 11707 chr3 198022430 + 140603940 140604146 THE1B 368 + 153 368 153433 19 1 0 26 47 57 113 chain 117373 chr3 198022430 + 140604152 140605595 THE1B-int 1605 + 6 1595 32006 351 0 145 694 7 8 391 chain 25338 chr3 198022430 + 140605605 140605949 THE1B 368 + 0 368 103034 40 0 15 117 1 0 26 1 0 4 30 41 125 chain 3211 chr3 198022430 + 140607861 140607895 L1MC5 759 + 259 293 220718 34 chain 68652 chr3 198022430 + 140610924 140611851 L1PB1 5432 - 765 1692 48959 13 7 8 11 11 7 248 4 3 180 8 12 445 chain 19960 chr3 198022430 + 140616273 140616563 MER50 708 - 388 688 127272 31 3 0 100 0 19 16 9 0 96 3 0 10 0 4 17 0 2 5 chain 57358 chr3 198022430 + 140619607 140620347 LTR17 781 + 0 757 54311 59 1 0 101 1 0 74 1 0 15 7 6 72 1 0 369 1 23 38 chain 13333 chr3 198022430 + 140624357 140624533 MER30 238 + 44 238 146961 62 4 22 110 chain 519046 chr3 198022430 + 140651932 140658677 L1PA7 6471 + 3 6470 5260 307 0 1 100 0 1 238 4 0 273 0 21 324 9 11 6 3 0 108 0 3 11 0 16 237 5 1 1228 0 4 157 0 10 30 0 3 5 1 2 316 2 1 105 0 3 205 0 1 11 1 0 218 14 6 1264 2 17 140 0 1 118 0 2 80 374 31 236 9 3 60 0 6 214 0 1 152 6 7 172 chain 13304 chr3 198022430 + 140704984 140705141 L1PA8 5853 - 6 161 147065 87 1 0 17 1 0 51 chain 2784 chr3 198022430 + 140706382 140706412 Tigger2 2703 + 2212 2242 228964 30 chain 533424 chr3 198022430 + 140706422 140712512 L1PA5 6144 + 0 6134 3787 178 0 1 202 0 1 74 0 1 266 1 2 141 0 2 1554 0 9 136 7 9 523 3 33 38 1 0 1190 0 2 932 1 0 703 3 0 137 chain 5684 chr3 198022430 + 140714256 140714342 MLT2B4 540 - 430 515 188259 15 0 1 52 6 4 13 chain 58235 chr3 198022430 + 140736150 140736889 LTR12 884 + 0 869 53843 79 0 132 129 1 2 39 2 0 34 10 9 445 chain 14779 chr3 198022430 + 140747715 140747923 L1PA8 5853 + 5650 5853 142004 28 6 5 5 1 0 51 3 2 19 1 0 20 1 0 73 chain 64132 chr3 198022430 + 140748690 140749413 SVA_C 1631 - 5 721 50948 7 5 0 617 1 0 48 1 0 44 chain 15919 chr3 198022430 + 140818027 140818198 AluYg6 310 - 13 184 138610 171 chain 5098 chr3 198022430 + 140831022 140831108 MIR 256 + 117 220 194101 16 11 28 59 chain 460600 chr3 198022430 + 140836352 140841918 L1PA6 6164 - 3 6164 8380 10 0 4 136 0 1 8 4 0 498 0 10 178 0 4 543 0 1 764 1 581 232 2 1 4 1 0 273 2 1 277 0 5 304 0 1 489 0 1 4 1 0 71 0 1 4 1 0 931 0 17 238 1 0 53 2 0 66 19 0 252 20 21 177 chain 169422 chr3 198022430 + 140850876 140853724 L1PB1 5432 - 18 2521 22129 13 17 15 16 26 44 15 9 0 11 2 0 5 1 0 15 310 6 33 5 4 68 2 0 10 5 1 14 1 0 6 2 0 23 9 0 12 19 9 290 17 7 26 5 9 128 5 2 3 0 1 95 0 9 13 3 7 126 0 2 125 0 2 185 6 11 208 4 20 89 49 0 55 0 6 229 7 5 84 3 0 10 1 2 98 3 5 144 1 0 187 chain 541759 chr3 198022430 + 140854205 140860321 L1PA4 6152 - 16 6152 2551 122 0 4 700 0 4 1137 5 11 478 0 1 2050 0 2 544 0 3 348 4 5 241 12 11 475 chain 104183 chr3 198022430 + 140860439 140862141 L1PBa 3878 - 739 2130 35694 105 0 1 121 2 0 6 0 2 193 0 4 133 0 1 445 0 2 55 7 10 111 0 3 5 3 0 9 323 0 109 0 1 75 chain 73094 chr3 198022430 + 140879376 140880453 L1PA14 3548 + 2393 3455 46984 37 0 2 103 5 4 48 1 0 101 1 0 92 0 12 146 26 22 40 9 5 109 9 5 12 8 5 85 1 0 109 16 11 38 4 2 12 1 0 5 8 7 10 1 0 40 chain 3498 chr3 198022430 + 140886675 140886725 MADE1 96 + 25 96 215379 14 1 0 4 0 22 31 chain 6908 chr3 198022430 + 140892146 140892226 MER41B 635 + 555 635 178133 80 chain 3427 chr3 198022430 + 140892964 140893005 MER65A 464 - 423 464 216634 41 chain 233117 chr3 198022430 + 140914701 140918073 L1PA13 3608 + 147 3497 17136 17 2 1 12 100 85 27 2 0 32 0 3 92 2 0 12 1 0 17 2 0 16 6 2 19 1 0 18 3 1 15 20 17 50 0 1 47 2 0 15 1 2 52 1 6 100 0 4 80 3 4 9 2 1 197 1 2 198 0 4 460 1 5 30 12 0 60 0 10 78 2 0 76 4 5 4 1 0 115 0 1 218 0 2 15 4 2 151 6 8 93 1 0 251 10 9 93 4 5 164 1 0 113 2 0 63 2 1 53 1 0 6 2 0 47 2 0 5 2 0 40 0 3 6 chain 23792 chr3 198022430 + 140923742 140924140 LTR7 482 + 0 474 111516 69 29 17 13 18 68 33 0 3 21 8 40 43 0 1 111 12 14 41 chain 305332 chr3 198022430 + 140924150 140928041 HERVH-int 3825 + 0 3824 13196 275 16 15 43 2 1 201 1 0 6 1 0 4 5 6 19 1 0 10 1 0 24 87 0 13 2 1 13 24 21 4 1 0 41 1 0 82 1 0 44 0 9 593 0 1 287 0 2 733 1 0 224 28 29 384 0 19 304 31 32 384 chain 5171 chr3 198022430 + 140924759 140924814 HERVH-int 3825 + 488 543 190502 55 chain 2032 chr3 198022430 + 140924814 140924846 HERVH-int 3825 + 652 683 209267 4 1 0 27 chain 27898 chr3 198022430 + 140930165 140930571 LTR7 482 + 0 482 93375 69 8 46 85 0 3 21 11 43 40 0 1 111 12 14 49 chain 24358 chr3 198022430 + 140952030 140952327 AluSp 311 + 3 304 108331 97 0 2 172 4 6 24 chain 4925 chr3 198022430 + 141012476 141012696 MER58A 224 - 4 223 195991 43 143 142 34 chain 531110 chr3 198022430 + 141014384 141020432 L1PA5 6144 - 0 6140 4069 138 0 7 9 2 0 8 6 1 626 0 1 60 0 4 1034 1 0 178 0 1 87 0 1 819 1 0 366 0 4 121 0 3 226 0 1 207 0 2 194 9 1 6 1 0 1006 1 0 417 0 8 120 6 88 249 13 9 88 0 1 49 chain 22797 chr3 198022430 + 141032133 141032471 MER66B 489 + 91 441 116591 212 0 7 30 7 17 38 20 15 31 chain 37004 chr3 198022430 + 141033127 141033594 L1PA8 5853 - 0 462 73507 92 2 1 19 2 1 45 0 1 13 1 0 73 2 0 44 1 0 173 chain 3194 chr3 198022430 + 141035900 141035939 Tigger4a 237 - 190 230 221046 4 0 1 35 chain 27535 chr3 198022430 + 141036825 141037178 THE1B 368 - 0 368 94554 174 0 2 133 0 15 28 3 1 15 chain 25771 chr3 198022430 + 141038752 141039105 THE1B 368 - 0 368 101007 225 2 1 24 0 1 40 18 33 44 chain 3544 chr3 198022430 + 141083074 141083207 L1MB7 1623 + 877 1014 214642 38 54 59 16 13 12 12 chain 20870 chr3 198022430 + 141083247 141083491 AluSp 311 + 10 254 124389 244 chain 25539 chr3 198022430 + 141149891 141150184 AluSq10 312 + 9 302 102059 293 chain 27416 chr3 198022430 + 141183251 141183614 THE1C 375 - 11 375 94916 178 4 3 40 1 5 125 2 0 13 chain 110085 chr3 198022430 + 141214931 141216174 L1PA5 6144 + 4904 6144 34189 393 0 4 691 7 0 152 chain 2525 chr3 198022430 + 141234765 141234793 L1PA5 6144 + 5857 5885 232826 28 chain 22761 chr3 198022430 + 141234794 141235046 L1PA5 6144 + 5885 6137 116777 252 chain 28169 chr3 198022430 + 141254941 141255294 THE1A 353 - 0 353 92403 243 1 0 83 0 1 26 chain 7475 chr3 198022430 + 141263079 141263372 L1MDa 1598 - 668 949 174303 33 186 174 74 chain 23237 chr3 198022430 + 141273820 141274124 AluSp 311 + 0 300 114508 10 1 0 196 1 2 41 4 0 14 0 2 23 2 0 12 chain 14019 chr3 198022430 + 141323597 141323752 L1PA5 6144 + 5983 6138 144506 155 chain 48840 chr3 198022430 + 141347169 141347807 LTR12 884 + 0 869 59848 25 1 0 195 15 123 22 0 22 178 0 102 202 chain 30718 chr3 198022430 + 141348631 141349170 LTR21A 479 - 0 479 83004 45 7 9 6 1 0 163 29 8 41 0 1 83 7 0 31 2 1 13 26 22 21 30 0 11 1 2 22 chain 23814 chr3 198022430 + 141356607 141356895 AluSp 311 + 9 296 111398 123 1 0 164 chain 536423 chr3 198022430 + 141388757 141395172 L1PA5 6144 + 0 6143 3389 1169 9 0 105 0 3 138 0 5 288 0 1 125 277 2 473 7 0 222 0 2 301 5 6 835 1 0 366 0 1 116 0 1 469 2 0 1140 1 0 42 1 2 247 0 13 59 5 0 12 chain 22388 chr3 198022430 + 141390600 141390860 L1PA5 6144 - 0 263 118547 11 1 4 248 chain 5131 chr3 198022430 + 141410966 141411024 MER4A1 472 - 0 58 193774 58 chain 200967 chr3 198022430 + 141412450 141415134 HERVH-int 3825 - 834 3815 19146 199 1 0 686 37 51 340 0 27 257 9 0 202 15 0 451 1 0 15 2 218 17 58 118 66 41 47 287 chain 6153 chr3 198022430 + 141418637 141419170 HERVFH21-int 991 - 133 469 183962 40 1 0 6 386 198 5 1 0 19 1 0 5 8 6 6 1 0 8 1 0 29 4 2 12 chain 183881 chr3 198022430 + 141421822 141424447 L1PB1 5432 + 2944 5277 20600 786 2 3 149 0 2 50 0 10 109 304 0 42 4 5 8 0 1 276 0 1 54 0 1 185 3 0 42 0 1 134 1 9 291 1 0 11 1 0 24 1 0 8 1 0 12 4 0 9 2 0 53 2 1 10 6 5 13 0 1 27 chain 23720 chr3 198022430 + 141450929 141451212 AluSc5 308 + 11 296 111936 266 0 2 17 chain 20447 chr3 198022430 + 141472211 141472502 MER1B 344 - 6 307 125764 53 12 22 43 4 0 134 1 5 44 chain 554484 chr3 198022430 + 141475990 141481995 L1PA2 6032 - 0 6032 886 128 4 0 2854 0 42 2130 0 1 512 13 1 364 chain 9523 chr3 198022430 + 141489874 141490009 L1PB4 2604 + 2201 2341 162964 41 8 13 86 chain 3153 chr3 198022430 + 141505176 141505242 MLT1E1A 663 + 12 84 221888 18 17 24 5 1 0 25 chain 9027 chr3 198022430 + 141534112 141534226 L1PA16 3655 - 582 696 165458 114 chain 25961 chr3 198022430 + 141540046 141540355 LTR17 781 + 0 326 100166 156 1 0 55 0 16 76 0 2 21 chain 8031 chr3 198022430 + 141552193 141552319 MER65D 500 + 0 133 170864 68 18 25 40 chain 23953 chr3 198022430 + 141601421 141601727 AluSp 311 - 8 311 110599 171 1 0 28 3 1 103 chain 25167 chr3 198022430 + 141603295 141603618 MLT2A1 477 + 0 324 103927 14 4 1 123 0 1 30 1 5 42 1 0 108 chain 25825 chr3 198022430 + 141612762 141613164 Tigger3b 1229 - 81 506 100773 74 0 1 28 0 1 41 3 5 38 10 11 55 7 20 108 13 18 25 chain 7662 chr3 198022430 + 141621767 141621861 U6 107 - 2 96 173149 94 chain 24724 chr3 198022430 + 141622612 141622915 AluSp 311 - 1 300 106298 128 3 0 129 1 0 42 chain 6340 chr3 198022430 + 141624200 141624292 MER20 218 + 111 204 182456 37 8 9 47 chain 19477 chr3 198022430 + 141643543 141643788 AluSc5 308 + 28 273 128725 4 1 0 83 0 2 140 1 0 16 chain 20556 chr3 198022430 + 141652077 141652349 AluSc8 310 + 0 271 125455 34 1 0 98 0 3 97 10 7 32 chain 24518 chr3 198022430 + 141663977 141664259 AluSp 311 - 19 300 107452 50 1 0 231 chain 24125 chr3 198022430 + 141686130 141686425 AluSp 311 - 8 301 109610 171 2 0 122 chain 20325 chr3 198022430 + 141690082 141690377 AluSg4 309 + 0 266 126163 19 0 1 58 18 1 44 15 3 105 1 0 35 chain 6518 chr3 198022430 + 141699060 141699179 Tigger3b 1229 + 543 654 181101 28 0 2 6 24 10 34 0 4 27 chain 90628 chr3 198022430 + 141729472 141730443 L1PA2 6032 + 5059 6030 39414 971 chain 2856 chr3 198022430 + 141747750 141747780 U2 167 - 137 167 227724 30 chain 28428 chr3 198022430 + 141749583 141749882 AluYa5 310 - 10 309 91475 299 chain 24546 chr3 198022430 + 141761579 141761882 AluSp 311 - 9 310 107274 39 0 1 130 3 0 131 chain 13683 chr3 198022430 + 141810486 141810742 MER1B 344 - 5 302 145656 15 1 0 38 21 22 129 36 77 16 chain 8920 chr3 198022430 + 141822748 141822879 L1PA8 5853 - 22 141 166029 38 10 0 33 1 0 17 1 0 31 chain 11088 chr3 198022430 + 141849344 141849475 L1PA4 6152 - 12 142 155854 6 1 0 124 chain 7277 chr3 198022430 + 141849487 141849607 L1MB3 1562 + 1433 1552 175605 5 2 0 26 1 3 52 5 4 29 chain 515879 chr3 198022430 + 141854248 141860344 L1PA6 6164 - 2 6163 5586 6 4 0 142 5 0 5 1 6 21 1 0 4 1 2 26 0 1 440 1 3 180 9 11 77 20 0 94 0 1 293 0 25 58 0 7 127 0 1 150 0 3 113 0 4 348 0 3 313 1 6 417 1 6 52 1 0 27 5 6 182 0 2 414 0 4 256 0 1 147 1 0 512 0 1 401 0 6 586 0 1 60 1 4 8 0 13 585 chain 93546 chr3 198022430 + 141860760 141862375 L1MA1 4479 + 2866 4139 38496 92 2 0 27 2 0 173 29 17 76 1 0 12 5 0 126 4 0 56 5 3 71 2 0 98 0 1 68 1 2 26 1 0 25 2 0 16 1 0 70 338 34 88 1 0 5 3 0 77 0 1 47 1 0 31 2 0 31 chain 5051 chr3 198022430 + 141875340 141875409 LTR40b 463 + 394 462 194627 30 1 0 38 chain 19806 chr3 198022430 + 141902319 141902590 AluSc 308 - 19 297 127793 8 2 0 195 0 1 17 11 19 38 chain 18396 chr3 198022430 + 141925578 141925786 HERVK11D-int 613 + 405 613 131805 208 chain 80497 chr3 198022430 + 141925786 141926685 MER11D 897 + 0 897 43392 287 3 1 609 chain 28171 chr3 198022430 + 141931666 141931967 AluYf4 310 - 1 302 92401 301 chain 27977 chr3 198022430 + 141948987 141949441 L1MA3 4352 - 193 614 93083 34 66 32 192 1 2 20 2 0 6 1 4 20 1 0 111 chain 14052 chr3 198022430 + 141951384 141951718 LTR10E 629 - 66 629 144375 54 21 21 9 1 2 11 57 56 57 1 0 15 1 236 42 21 16 44 chain 118796 chr3 198022430 + 141972401 141974338 L1PBa 3878 + 2195 3730 31487 363 4 8 136 0 6 20 0 1 263 0 2 40 4 1 13 0 2 65 7 17 54 420 0 38 3 0 491 2 1 14 chain 11122 chr3 198022430 + 141977062 141977205 MER41B 635 + 487 635 155727 63 1 6 79 chain 27710 chr3 198022430 + 141978308 141978692 MER51B 395 - 0 395 94003 132 3 13 5 1 0 98 6 1 6 3 0 7 0 8 18 0 2 105 chain 14286 chr3 198022430 + 141992761 141992931 L1PA6 6164 - 2 170 143597 8 2 0 160 chain 32570 chr3 198022430 + 141993305 141993856 L1PB 1623 - 48 564 79903 21 57 34 4 1 0 14 5 1 13 3 0 4 1 0 29 3 2 7 1 0 199 2 1 187 chain 29392 chr3 198022430 + 142003455 142003873 LTR7B 505 - 10 505 87106 41 14 13 42 0 1 36 1 0 80 0 2 28 15 77 58 0 11 13 0 3 90 chain 123811 chr3 198022430 + 142004719 142006832 HUERS-P3b-int 2065 + 13 2030 29766 35 0 10 36 3 0 59 21 23 14 0 3 106 94 15 53 18 18 53 0 3 49 0 3 38 0 1 13 7 0 36 13 10 11 0 4 30 0 3 114 0 1 20 9 8 19 0 1 5 1 0 11 7 11 25 2 1 85 12 0 172 5 2 104 2 3 94 0 13 142 1 0 45 25 2 17 0 1 7 30 31 27 0 2 17 4 2 18 1 0 89 3 1 73 2 0 13 21 18 47 31 27 21 16 15 87 chain 542568 chr3 198022430 + 142009051 142015071 L1PA3long 6157 + 4 6157 2412 145 6 7 424 0 4 192 0 128 2273 1 0 253 0 1 2726 chain 21801 chr3 198022430 + 142018663 142018950 L1PA16 3655 - 62 346 121014 15 3 0 269 chain 295460 chr3 198022430 + 142019426 142025211 L1PB1 5432 + 1365 5420 13675 41 11 0 139 0 4 364 1 0 187 0 1 387 26 19 75 0 5 70 0 11 155 0 3 16 11 14 126 0 1 4 0 5 61 0 12 26 10 9 111 1 0 52 0 1 118 320 0 22 0 14 272 0 23 8 0 2 242 6 56 164 1068 2 200 0 1 119 0 2 117 3 0 166 21 14 209 0 2 44 476 54 23 1 0 9 1 0 9 2 0 3 2 0 10 3 1 49 1 0 17 1 0 41 33 20 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 83677 chr3 198022430 + 142022483 142023520 MER11C 1089 - 26 1089 42041 325 0 1 38 1 0 9 0 4 131 1 0 4 0 2 130 0 2 31 1 0 58 5 11 62 0 9 16 0 5 225 chain 69783 chr3 198022430 + 142042929 142043749 L1PA4 6152 - 0 811 48479 14 11 1 145 0 1 650 chain 16531 chr3 198022430 + 142058680 142058911 L1M1 2793 + 1013 1246 136830 53 0 1 113 2 1 46 6 8 11 chain 4697 chr3 198022430 + 142072853 142072908 U6 107 + 1 56 198560 55 chain 10576 chr3 198022430 + 142093619 142094058 MLT1C 463 + 3 461 157930 6 1 0 13 20 41 27 51 57 48 166 163 28 2 0 24 0 1 28 10 7 15 chain 3412 chr3 198022430 + 142099316 142099354 5S 121 - 79 117 216894 38 chain 20625 chr3 198022430 + 142108075 142108375 Tigger1 2417 - 612 908 125208 79 8 5 111 12 11 90 chain 120928 chr3 198022430 + 142111169 142112486 L1PA2 6032 - 0 1321 30719 99 0 4 1218 chain 33628 chr3 198022430 + 142125644 142126059 Tigger4 2445 - 1197 1613 78201 88 0 1 327 chain 2450 chr3 198022430 + 142132089 142132134 MamRep1894 122 + 2 45 233706 22 7 5 16 chain 43428 chr3 198022430 + 142156425 142157001 L1MA2 4263 + 3304 3872 64898 192 2 1 87 5 2 76 1 0 146 3 0 64 chain 8946 chr3 198022430 + 142157020 142157136 HERV17-int 4347 + 78 191 165477 34 2 0 27 1 0 52 chain 378032 chr3 198022430 + 142157136 142161537 HERV17-int 4347 + 13 4341 10815 14 1 0 48 1 0 37 2 0 27 1 0 158 3 0 37 0 1 342 0 1 31 0 2 611 0 4 142 3 0 235 31 12 894 0 1 272 0 1 257 0 1 58 0 1 398 74 14 339 1 6 384 chain 25325 chr3 198022430 + 142162170 142162496 LTR17 781 + 0 326 103094 110 9 18 32 0 1 148 10 0 17 chain 28669 chr3 198022430 + 142173279 142173582 AluYf4 310 - 7 310 90455 303 chain 5488 chr3 198022430 + 142178429 142178608 MER8 282 + 0 235 190144 47 5 6 12 47 100 15 26 28 27 chain 2974 chr3 198022430 + 142179970 142180011 L1MC4a 1092 - 482 521 225571 23 2 0 16 chain 17410 chr3 198022430 + 142189801 142190252 L1MB3 1562 - 12 421 134476 27 16 6 17 105 75 4 1 0 70 1 0 9 1 0 107 60 61 33 chain 542105 chr3 198022430 + 142193947 142200070 L1PA5 6144 - 5 6144 2487 51 0 1 56 1 0 152 0 1 501 1 0 48 0 1 27 0 4 345 0 1 927 0 3 718 0 3 812 1 2 291 0 2 665 0 1 1527 chain 8916 chr3 198022430 + 142200096 142200226 L1MA8 2339 - 2217 2339 166057 48 6 0 34 1 0 20 1 0 20 chain 29251 chr3 198022430 + 142220888 142221362 L1PA16 3655 + 3059 3619 87787 32 9 14 95 14 22 68 2 0 134 0 100 54 3 0 5 30 13 7 5 0 16 chain 25104 chr3 198022430 + 142233193 142233491 AluY 311 + 4 298 104263 60 2 0 59 2 0 175 chain 72521 chr3 198022430 + 142250096 142250910 L1PA4 6152 - 1 812 47256 5 3 0 806 chain 15959 chr3 198022430 + 142250910 142251083 L1P1 4361 - 4187 4360 137921 173 chain 3983 chr3 198022430 + 142251807 142251857 MER3 215 - 5 55 207639 50 chain 50672 chr3 198022430 + 142270326 142271128 L1PA11 4918 + 3831 4629 58519 260 0 2 57 0 1 180 2 11 52 6 1 37 0 18 25 5 4 9 1 0 20 44 34 12 1 0 13 2 0 11 47 33 18 chain 52516 chr3 198022430 + 142304360 142305445 L1MA3 4352 - 0 778 57291 17 6 3 4 1 0 6 1 0 8 10 9 16 2 1 6 1 0 24 2 0 54 0 8 21 1 4 33 353 45 519 chain 7009 chr3 198022430 + 142310543 142310627 5S 121 - 31 115 177401 84 chain 4732 chr3 198022430 + 142349628 142349770 L1MB2 1706 + 263 411 198136 24 69 75 49 chain 21453 chr3 198022430 + 142352241 142352501 AluSq2 311 + 22 287 122323 6 0 4 101 0 1 153 chain 6182 chr3 198022430 + 142380707 142380774 MER41A 554 + 399 466 183724 67 chain 52964 chr3 198022430 + 142380777 142381418 L1PA7 6471 + 5831 6468 57037 324 0 1 64 12 8 87 1 2 109 2 0 42 chain 4018 chr3 198022430 + 142384672 142384718 LSU-rRNA_Hsa 377 - 10 56 207108 46 chain 20022 chr3 198022430 + 142392443 142392684 7SK 245 + 3 245 127076 156 1 2 84 chain 166759 chr3 198022430 + 142397116 142398926 L1PA3long 6157 - 0 1810 22426 1810 chain 17045 chr3 198022430 + 142405967 142406187 MER30 238 - 3 238 135474 111 5 17 10 0 3 94 chain 17797 chr3 198022430 + 142417836 142418430 L1PA8 5853 + 5586 5853 133420 22 2 0 67 8 7 6 1 0 52 2 1 19 321 0 46 7 6 41 chain 25472 chr3 198022430 + 142419582 142419933 THE1A 353 + 0 353 102348 47 0 1 6 1 2 38 1 0 15 15 16 228 chain 13296 chr3 198022430 + 142420132 142420341 Tigger4a 237 - 0 237 147103 39 4 22 30 1 5 25 2 9 74 1 0 33 chain 34873 chr3 198022430 + 142436180 142436617 L1PBa1 4058 + 1145 1584 76377 311 1 0 76 0 3 49 chain 379824 chr3 198022430 + 142436818 142442404 L1PB1 5432 + 563 5427 10757 205 1 0 67 13 10 397 0 4 162 4 1 1049 0 4 29 6 1 28 308 4 296 1 0 32 0 4 13 15 8 18 0 16 105 17 0 190 0 2 517 17 1 30 4 1 5 0 3 450 1 0 414 0 1 26 308 0 99 29 25 24 1 0 79 0 1 219 56 11 24 1 0 11 1 0 8 4 0 11 2 0 11 6 0 41 2 1 14 2 1 44 1 0 16 1 0 6 16 6 19 8 4 15 1 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 18951 chr3 198022430 + 142458739 142459013 MER1B 344 + 38 335 130222 182 4 0 33 25 52 30 chain 6669 chr3 198022430 + 142465622 142465710 AluYk4 311 + 204 294 179914 72 2 4 14 chain 110354 chr3 198022430 + 142468484 142469781 L1PA7 6471 + 5029 6452 34107 202 1 2 369 8 15 614 0 1 31 0 116 43 0 1 29 chain 93601 chr3 198022430 + 142470886 142471916 LTR5A 1029 - 0 1029 38475 882 1 0 147 chain 9017 chr3 198022430 + 142473268 142473386 L1PA5 6144 + 6032 6144 165510 15 5 0 79 1 0 18 chain 35430 chr3 198022430 + 142476157 142476652 L1PA8 5853 + 5350 5853 75639 24 0 3 17 0 2 110 11 17 41 1 0 46 2 0 51 0 4 17 8 6 52 2 1 19 2 1 92 chain 100555 chr3 198022430 + 142477519 142478719 L1PA5 6144 - 0 1191 36615 11 3 1 116 0 1 25 0 1 691 1 5 109 18 6 187 1 0 38 chain 19143 chr3 198022430 + 142485002 142485236 MLT2A1 477 + 0 235 129699 168 5 2 9 0 1 24 0 3 28 chain 3904 chr3 198022430 + 142520049 142520093 U7 62 + 1 45 208782 44 chain 24719 chr3 198022430 + 142561297 142561596 AluSp 311 + 0 297 106332 125 2 0 172 chain 58876 chr3 198022430 + 142587117 142588820 MER4D1 891 + 0 891 53473 98 0 1 14 538 0 74 312 0 50 0 28 98 0 1 50 1 0 18 0 3 37 10 14 72 1 2 70 1 0 38 2 0 135 24 28 60 chain 37245 chr3 198022430 + 142587231 142587766 LTR10F 562 + 0 560 73175 105 2 30 95 5 1 18 9 16 8 2 0 8 2 0 79 13 9 57 0 1 76 1 2 55 chain 5603 chr3 198022430 + 142595192 142595262 MIR 256 - 92 162 189052 70 chain 9776 chr3 198022430 + 142600402 142600522 Tigger3a 397 - 117 237 161719 120 chain 4657 chr3 198022430 + 142603728 142603820 MER3 215 + 66 180 198986 35 0 1 16 21 42 20 chain 34601 chr3 198022430 + 142625735 142626606 MER51A 677 - 16 676 76756 148 2 1 86 14 24 38 23 95 25 0 6 39 351 52 113 0 1 32 chain 7384 chr3 198022430 + 142638260 142638350 MER85 139 + 0 90 174880 90 chain 32987 chr3 198022430 + 142654442 142654908 MER1A 529 + 59 521 79237 18 26 22 61 0 1 96 0 1 199 11 9 55 chain 41240 chr3 198022430 + 142665444 142665998 MER41A 554 - 7 554 67601 202 15 10 239 11 12 41 5 2 41 chain 21891 chr3 198022430 + 142683688 142683982 AluSc 308 + 0 307 120656 37 3 21 19 2 1 53 6 5 81 3 0 90 chain 5816 chr3 198022430 + 142699956 142700028 MLT1B 390 - 11 83 186985 72 chain 82493 chr3 198022430 + 142707310 142708235 L1PA4 6152 + 5216 6143 42540 88 0 4 707 1 0 113 1 0 15 chain 15414 chr3 198022430 + 142746143 142746499 L1MB3 1562 - 7 333 140156 32 1 0 59 1 0 12 64 36 20 38 36 8 1 0 73 8 12 4 1 0 34 chain 89649 chr3 198022430 + 142765163 142766161 SVA_D 2077 - 0 1128 39765 379 0 2 253 1 0 26 0 49 56 1 79 189 0 1 5 0 1 88 chain 31645 chr3 198022430 + 142766178 142766753 SVA_F 1814 - 523 954 81413 17 128 0 97 1 0 189 78 64 45 1 0 19 chain 7894 chr3 198022430 + 142766196 142766323 SVA_F 1814 - 540 716 85108 71 0 49 56 chain 4165 chr3 198022430 + 142766610 142766677 SVA_F 1814 - 940 1242 85108 13 6 5 29 3 239 16 chain 59742 chr3 198022430 + 142792564 142793230 SVA_C 1631 + 959 1627 52968 42 1 3 623 chain 172418 chr3 198022430 + 142804459 142806480 SVA_D 2077 - 1 2076 21768 5 2 0 373 0 2 251 1 0 8 0 49 41 1 0 295 1 0 6 35 10 6 1 0 76 2 38 13 2 0 75 40 0 101 4 44 682 chain 3261 chr3 198022430 + 142805443 142805478 SVA_D 2077 - 905 940 97185 35 chain 27146 chr3 198022430 + 142835850 142836254 LTR7 482 - 12 482 95773 37 13 14 113 0 1 9 25 50 82 0 1 48 9 47 68 chain 53416 chr3 198022430 + 142860947 142861663 LTR17 781 + 0 755 56745 57 2 1 103 1 0 18 7 6 52 1 0 90 1 0 358 12 56 14 chain 19186 chr3 198022430 + 142884733 142884950 L1PA2 6032 + 5818 6032 129569 199 3 0 15 chain 19973 chr3 198022430 + 142899588 142899871 AluSg7 307 - 15 297 127226 142 18 19 67 13 11 43 chain 115915 chr3 198022430 + 142899880 142901360 L1PA11 4918 - 528 2018 32490 62 1 0 69 0 1 125 11 8 199 3 4 96 0 2 158 1 0 91 0 1 42 1 5 116 5 7 39 1 4 448 1 2 11 chain 21205 chr3 198022430 + 142911786 142912150 THE1B 368 + 0 368 123197 107 27 28 42 24 16 16 1 5 14 7 15 60 2 0 7 1 2 56 chain 14010 chr3 198022430 + 142914578 142914953 MSTA 426 + 18 417 144544 33 1 0 46 37 59 6 4 0 25 89 92 21 24 28 89 chain 13810 chr3 198022430 + 142915126 142915363 L1MA3 4352 - 4 233 145221 32 1 0 19 10 9 6 1 0 24 28 22 13 0 1 103 chain 12578 chr3 198022430 + 142916808 142916986 MER30 238 + 46 238 149925 63 4 21 69 3 0 39 chain 3547 chr3 198022430 + 142928447 142928492 MIR3 191 - 85 130 214586 45 chain 8899 chr3 198022430 + 142929763 142929875 MSTB 430 - 12 124 166145 112 chain 62924 chr3 198022430 + 142946215 142946912 L1PA3long 6157 - 0 697 51478 697 chain 27097 chr3 198022430 + 142969263 142969618 THE1A 353 + 0 353 95953 102 9 8 191 1 0 52 chain 29156 chr3 198022430 + 142998265 142998627 L1PA7 6471 - 5 370 88280 49 1 5 90 3 2 219 chain 14841 chr3 198022430 + 143003957 143004140 L1PA7 6471 - 30 214 141804 19 0 1 164 chain 7332 chr3 198022430 + 143019313 143019442 MER5A1 166 - 1 126 175212 12 21 22 15 5 0 76 chain 529078 chr3 198022430 + 143109316 143115445 L1PA4 6152 + 10 6152 4291 663 9 8 1137 0 1 500 0 1 129 0 4 42 0 1 170 1 0 126 4 0 897 1 0 430 0 1 231 0 4 475 17 18 1018 0 3 109 1 4 56 0 1 113 chain 59918 chr3 198022430 + 143231767 143232663 Tigger1 2417 - 184 1099 52865 83 14 12 86 25 26 170 18 11 47 5 8 33 8 22 20 0 1 4 1 0 173 8 9 70 0 8 46 0 1 85 chain 28630 chr3 198022430 + 143232679 143233024 L1PA5 6144 - 1 335 90607 103 12 1 230 chain 24723 chr3 198022430 + 143318873 143319167 L1PA7 6471 - 4 295 106306 8 3 0 283 chain 4989 chr3 198022430 + 143336392 143336458 MER102b 334 + 95 160 195263 29 1 0 36 chain 546725 chr3 198022430 + 143339472 143345619 L1PA4 6152 + 0 6152 1861 158 7 8 2034 0 2 1980 0 2 1949 0 2 12 2 0 5 chain 512962 chr3 198022430 + 143381175 143387330 L1PA5 6144 + 0 6143 5884 120 0 14 480 0 15 323 25 0 76 1 2 4 1 0 135 9 0 304 14 1 483 8 9 344 9 4 808 1 5 69 2 0 62 0 2 248 0 1 163 4 1 668 0 4 524 0 1 424 1 0 421 0 2 396 0 2 28 chain 95029 chr3 198022430 + 143414035 143415171 L1PA7 6471 - 7 1183 38083 331 1 2 163 5 8 114 0 28 193 1 8 105 0 1 223 chain 27025 chr3 198022430 + 143433672 143434028 THE1B 368 + 0 368 96205 44 0 15 113 4 3 136 2 0 57 chain 65042 chr3 198022430 + 143444035 143444738 L1PA3long 6157 + 5454 6157 50555 703 chain 29568 chr3 198022430 + 143467534 143467844 AluYb8 318 - 8 318 86341 310 chain 8741 chr3 198022430 + 143478987 143479084 L1PA5 6144 - 2140 2237 166484 97 chain 28108 chr3 198022430 + 143479084 143479396 L1PA5 6144 + 4028 4341 92612 262 0 1 50 chain 92128 chr3 198022430 + 143479396 143480424 L1PA5 6144 + 4345 5373 38925 1028 chain 68540 chr3 198022430 + 143480424 143481181 L1PA5 6144 + 5375 6132 49018 757 chain 29423 chr3 198022430 + 143504687 143504996 AluYg6 310 - 1 310 86975 309 chain 27015 chr3 198022430 + 143516286 143516769 LTR7 482 + 0 470 96231 50 4 9 10 68 17 15 15 14 109 0 1 5 0 31 44 0 1 113 13 14 37 chain 274176 chr3 198022430 + 143516783 143520546 HERVH-int 3825 + 0 3825 14970 45 0 1 262 1 0 25 1 0 63 23 22 28 66 312 5 0 2 15 2 0 7 4 9 311 0 1 121 15 0 202 9 0 348 0 1 475 0 1 145 75 76 496 165 0 42 1 0 27 17 16 767 chain 26987 chr3 198022430 + 143524318 143524754 LTR7 482 + 0 469 96322 86 0 50 31 51 0 57 5 37 44 0 1 113 13 14 36 chain 3551 chr3 198022430 + 143530241 143530285 MIRb 242 + 74 118 214527 44 chain 29868 chr3 198022430 + 143535971 143536289 AluYb8 318 - 0 318 85222 318 chain 151397 chr3 198022430 + 143576917 143579024 L1PB2 3958 - 120 2175 24412 63 1 0 22 2 0 72 1 0 64 1 0 6 19 5 61 1 0 94 18 12 65 6 0 11 1 0 56 2 0 182 0 4 33 0 2 162 7 6 166 0 1 63 27 2 201 0 1 245 0 3 105 3 4 47 3 0 297 chain 79171 chr3 198022430 + 143592346 143593292 LTR13A 966 - 16 966 43967 179 1 0 127 10 15 629 chain 25421 chr3 198022430 + 143614340 143614638 AluY 311 + 0 303 102589 27 3 0 79 0 6 14 0 2 175 chain 29448 chr3 198022430 + 143624039 143624352 AluYb8 318 - 5 318 86859 313 chain 290721 chr3 198022430 + 143639910 143643462 HERVL-int 5654 - 5 3604 13978 199 1 0 87 0 4 368 0 2 196 0 25 332 1 2 90 0 7 6 10 3 314 0 1 473 0 1 886 1 5 75 0 6 142 5 4 134 3 4 101 0 4 128 chain 21707 chr3 198022430 + 143649032 143649329 MLT2A2 560 - 258 560 121365 98 0 1 4 3 5 20 7 8 56 3 4 106 chain 99457 chr3 198022430 + 143649758 143650907 L1PA3long 6157 - 0 1153 36853 15 3 0 318 0 1 438 0 1 64 10 14 72 0 1 229 chain 179504 chr3 198022430 + 143650907 143652958 L1PA3long 6157 + 2880 5000 21030 119 0 1 271 0 2 1103 0 1 505 1 66 52 chain 4303 chr3 198022430 + 143671100 143671283 MER53 195 - 2 192 203181 21 39 42 26 1 0 4 63 68 29 chain 5242 chr3 198022430 + 143680228 143680297 Arthur1C 363 - 56 129 192603 22 0 3 21 0 1 26 chain 103461 chr3 198022430 + 143701213 143702629 L1P2 5180 + 1764 3223 35878 278 0 1 164 6 10 53 8 30 27 15 2 53 2 0 5 1 7 52 19 23 108 0 4 144 0 16 31 10 18 15 8 1 417 chain 28376 chr3 198022430 + 143705284 143705588 AluYf4 310 + 0 304 91678 304 chain 3832 chr3 198022430 + 143717612 143717656 Kanga1d 558 - 97 141 209899 44 chain 27563 chr3 198022430 + 143739847 143740195 THE1A 353 - 0 347 94461 151 1 0 196 chain 241039 chr3 198022430 + 143740218 143742944 L1PA5 6144 - 3383 6123 16720 238 4 0 345 0 3 814 1 0 372 0 15 206 0 1 286 1 0 6 0 1 453 chain 288215 chr3 198022430 + 143742965 143746303 L1PA5 6144 + 2780 6139 14151 229 11 0 1037 0 22 854 0 1 40 14 2 95 0 1 230 0 4 375 0 13 128 0 3 172 12 5 8 0 7 133 chain 14746 chr3 198022430 + 143755969 143756188 Tigger3a 397 + 38 316 142116 37 15 64 12 1 11 154 chain 84587 chr3 198022430 + 143790417 143791509 MER11A 1151 - 0 1151 41685 53 14 13 145 1 0 46 0 32 389 1 3 58 0 1 22 0 1 60 0 2 21 0 11 60 0 4 143 0 8 79 chain 52926 chr3 198022430 + 143799844 143800550 L1PA11 4918 - 937 1642 57069 34 4 7 32 3 1 217 1 0 27 1 0 312 1 0 5 8 9 61 chain 35383 chr3 198022430 + 143800555 143801049 L1PA11 4918 + 3988 4474 75688 77 2 1 227 1 3 8 2 1 27 5 0 61 2 1 13 5 3 64 chain 23871 chr3 198022430 + 143844177 143844464 L1PA6 6164 - 3 289 111078 145 1 0 141 chain 17772 chr3 198022430 + 143844464 143844664 L1PA6 6164 + 5672 5872 133500 200 chain 87633 chr3 198022430 + 143856062 143857125 MER11C 1089 - 16 1089 40520 335 0 1 45 0 4 359 9 13 59 6 7 250 chain 16636 chr3 198022430 + 143864880 143865093 HSMAR1 1287 - 0 220 136568 87 0 8 61 1 0 64 chain 16136 chr3 198022430 + 143878952 143879310 THE1D 372 - 0 360 137948 161 44 45 18 91 92 44 chain 62847 chr3 198022430 + 143900539 143901298 MER4E 760 + 0 760 51515 23 0 1 736 chain 20041 chr3 198022430 + 143921318 143921575 L1PA5 6144 - 2 257 127007 182 9 7 66 chain 10800 chr3 198022430 + 143922063 143922192 MER72 723 - 0 129 156990 129 chain 456019 chr3 198022430 + 143923363 143928977 HERVL-int 5654 - 0 5654 8544 293 1 4 251 5 0 209 30 22 507 0 4 40 6 7 739 0 8 143 0 1 321 0 28 539 13 14 121 1 0 465 1 0 4 0 1 677 0 1 255 0 1 124 0 5 32 1 2 381 0 1 255 1 0 199 chain 29342 chr3 198022430 + 143928977 143929418 MLT2A1 477 - 0 422 87335 6 0 4 46 1 0 14 0 1 9 12 0 10 10 0 168 14 15 24 0 1 9 4 1 114 chain 28327 chr3 198022430 + 143931802 143932202 THE1A-int 1579 - 1156 1552 91844 33 11 12 93 1 2 59 2 1 118 9 4 74 chain 49423 chr3 198022430 + 143949458 143950001 L1PA4 6152 - 437 980 59439 543 chain 36099 chr3 198022430 + 143950001 143950409 L1PA4 6152 + 5735 6143 74766 157 1 0 146 0 1 104 chain 72578 chr3 198022430 + 143978988 143979853 L1P3 4156 - 136 1006 47231 34 2 3 65 0 1 180 0 1 168 1 2 173 1 2 241 chain 107912 chr3 198022430 + 144010037 144011579 L1PA11 4918 - 351 1863 34748 13 1 0 12 52 39 13 6 5 11 2 0 67 2 0 12 8 7 46 0 1 13 5 0 421 0 1 8 0 1 79 22 5 128 0 1 248 33 38 95 0 2 87 0 1 158 chain 6815 chr3 198022430 + 144015440 144015540 HSMAR2 1300 - 1214 1299 178838 20 15 0 65 chain 9161 chr3 198022430 + 144025658 144025792 MER2 342 - 81 206 164757 105 0 6 6 15 0 8 chain 4968 chr3 198022430 + 144031415 144031631 MLT1A1 405 - 48 285 195505 51 140 161 25 chain 23019 chr3 198022430 + 144035711 144035968 L1PA2 6032 - 2 259 115532 257 chain 22591 chr3 198022430 + 144087311 144087687 THE1B 368 - 0 368 117623 67 15 14 94 31 24 51 10 11 58 1 2 34 2 0 13 chain 35522 chr3 198022430 + 144098144 144098596 MLT2A2 560 - 0 560 75520 147 0 11 13 0 98 111 1 0 180 chain 5794 chr3 198022430 + 144116109 144116196 L1MA2 4263 - 163 243 187211 41 8 1 38 chain 4614 chr3 198022430 + 144136163 144136237 L1PB1 5432 + 5347 5418 199468 23 1 0 21 2 1 12 1 0 14 chain 22065 chr3 198022430 + 144136473 144136786 L1PA8A 6298 + 6002 6284 119944 169 35 3 70 0 1 39 chain 25171 chr3 198022430 + 144197655 144198050 L1PA8 5853 + 5480 5853 103902 82 1 0 45 3 1 17 0 4 50 1 0 8 2 1 11 0 1 40 2 1 17 4 3 12 1 0 3 14 0 67 5 0 10 chain 29668 chr3 198022430 + 144204541 144204852 AluYb8 318 - 7 318 85964 311 chain 27376 chr3 198022430 + 144223350 144223786 MLT2A1 477 - 0 477 95035 18 1 0 18 23 61 165 48 52 81 1 0 57 0 1 24 chain 134860 chr3 198022430 + 144223786 144225465 HERVL-int 5654 - 0 1681 27048 223 0 1 438 8 7 86 5 7 919 chain 115662 chr3 198022430 + 144225644 144227143 THE1A-int 1579 - 25 1550 32571 19 4 14 526 2 0 12 8 0 695 0 26 173 4 5 47 1 0 8 chain 25841 chr3 198022430 + 144228609 144229049 L1PA15 4387 - 39 463 100697 13 13 9 13 2 0 43 6 3 50 1 0 12 4 0 20 1 0 55 1 0 25 2 1 69 20 22 81 1 0 8 chain 40717 chr3 198022430 + 144260136 144260839 L1PA15 4387 + 3693 4366 68281 114 15 13 10 3 0 57 2 0 46 1 0 47 3 0 28 15 17 78 2 1 27 1 0 53 2 1 23 4 0 8 2 1 48 23 18 30 4 2 14 5 0 27 1 0 10 chain 9112 chr3 198022430 + 144287187 144287301 THE1D 372 - 34 148 165004 114 chain 32200 chr3 198022430 + 144293863 144294378 L1PA16 3655 - 438 958 80522 54 6 11 25 15 17 65 23 24 101 1 0 22 1 0 113 2 0 40 7 8 40 chain 6311 chr3 198022430 + 144305425 144305499 LTR45 522 + 74 148 182706 74 chain 16234 chr3 198022430 + 144320820 144321027 L1PA4 6152 - 1 202 137662 10 7 0 102 0 1 88 chain 11535 chr3 198022430 + 144321029 144321161 L1PA4 6152 + 5810 5942 154167 132 chain 531279 chr3 198022430 + 144333469 144339611 L1PA5 6144 - 13 6141 4045 836 0 4 75 1 0 4 0 1 51 1 2 41 0 1 4 1 0 248 0 1 825 0 1 50 0 3 741 1 0 421 1 2 467 1 0 143 11 0 651 5 0 1382 18 11 163 chain 39684 chr3 198022430 + 144351032 144351522 THE1A-int 1579 + 1082 1571 69779 19 2 0 244 0 1 225 chain 23976 chr3 198022430 + 144351534 144351870 THE1A 353 + 4 353 110473 26 0 13 65 10 9 153 12 13 70 chain 3818 chr3 198022430 + 144363707 144363838 L1MB8 1703 + 1378 1496 210115 18 40 38 25 20 9 28 chain 4163 chr3 198022430 + 144366091 144366241 L1M3 994 - 160 299 205053 36 82 71 32 chain 13204 chr3 198022430 + 144373585 144373743 AluY 311 + 137 295 147444 158 chain 23910 chr3 198022430 + 144429647 144429943 AluSp 311 - 12 300 110863 17 7 0 54 1 0 217 chain 16148 chr3 198022430 + 144448975 144449160 L1PA3long 6157 - 0 186 137906 161 0 1 24 chain 231896 chr3 198022430 + 144457414 144459953 L1PA3long 6157 - 0 2539 17206 856 0 1 549 0 1 307 2 0 825 chain 131193 chr3 198022430 + 144468471 144470053 LTR12C 1709 + 0 1709 27818 122 1 0 4 0 1 318 1 2 12 1 0 10 0 4 177 0 119 68 1 0 275 1 0 4 4 2 106 0 4 101 1 2 7 0 3 368 chain 59239 chr3 198022430 + 144472134 144472799 L1PA5 6144 - 0 666 53256 113 3 4 549 chain 292051 chr3 198022430 + 144504190 144507934 L1PA8A 6298 - 8 3791 13899 97 6 6 172 3 10 506 7 10 34 0 10 184 6 8 172 0 1 5 1 0 256 2 0 140 0 5 326 9 13 263 0 1 165 0 1 206 2 3 102 3 4 165 4 8 304 0 3 198 6 5 400 chain 93665 chr3 198022430 + 144522253 144523510 L1PA8 5853 - 0 1261 38452 18 0 1 72 0 2 5 4 1 13 2 1 49 15 14 67 2 0 10 1 2 6 0 11 19 1 0 204 1 0 269 4 3 77 2 0 52 0 1 5 1 0 79 0 1 266 0 1 4 1 0 8 chain 3083 chr3 198022430 + 144544992 144545164 LTR12B 2670 - 955 1024 223289 26 122 19 24 chain 82932 chr3 198022430 + 144572422 144573387 LTR13A 966 - 0 966 42364 187 0 1 173 1 0 305 0 1 299 chain 63527 chr3 198022430 + 144622288 144623069 LTR12 884 - 0 884 51235 485 0 22 16 1 0 23 0 1 1 0 41 185 0 41 44 1 0 25 chain 299377 chr3 198022430 + 144624264 144628114 HERV9-int 5642 - 818 5642 13461 38 0 6 160 0 3 115 44 43 349 0 1 104 17 15 38 7 942 27 2 0 243 5 0 190 0 1 5 1 0 652 0 8 385 0 28 178 1 0 186 3 0 80 80 0 3 0 85 76 0 4 69 7 6 180 6 5 599 chain 62829 chr3 198022430 + 144628149 144628915 LTR12 884 - 15 884 51525 304 1 0 187 2 0 54 0 66 148 0 41 44 1 0 25 chain 77589 chr3 198022430 + 144630522 144631505 L1PA7 6471 + 5454 6464 44696 167 0 3 74 0 2 45 0 1 71 3 0 186 0 2 5 7 5 142 0 14 39 0 1 6 1 0 91 1 2 111 1 10 33 chain 103262 chr3 198022430 + 144644383 144645799 L1PA7 6471 - 7 6471 35935 74 14 10 277 0 31 73 0 1 307 14 115 84 5 0 367 13 4937 188 chain 8072 chr3 198022430 + 144646766 144646871 L1PA16 3655 + 3484 3586 170638 94 3 0 8 chain 56525 chr3 198022430 + 144671471 144672231 MER4E1 777 - 8 777 54839 219 2 10 179 5 10 43 0 1 7 1 0 9 5 6 57 0 1 41 1 0 169 6 1 16 chain 62883 chr3 198022430 + 144690730 144691616 L1PA8 5853 - 0 891 51498 93 1 0 19 3 2 100 33 31 22 0 4 12 11 10 349 1 2 147 4 5 44 0 4 47 chain 89031 chr3 198022430 + 144701959 144703013 MER11C 1089 - 16 1089 39988 183 1 2 150 0 1 45 0 4 367 0 4 62 0 9 246 chain 41750 chr3 198022430 + 144703263 144703754 MER9a2 513 - 22 513 66963 291 0 1 186 1 0 13 chain 6950 chr3 198022430 + 144729493 144729686 MER82 654 - 304 495 177812 40 93 91 60 chain 77269 chr3 198022430 + 144742395 144743240 L1PA3long 6157 + 5313 6157 44844 511 1 0 333 chain 62510 chr3 198022430 + 144763506 144764396 L1PB 1623 - 349 1224 51676 87 2 1 280 0 4 7 68 44 260 0 4 102 1 0 75 0 3 8 chain 5013 chr3 198022430 + 144769758 144769815 L1PA4 6152 + 6084 6141 194985 57 chain 30859 chr3 198022430 + 144772385 144772824 MLT2A1 477 - 1 477 82755 16 6 5 21 6 0 10 3 39 212 1 5 23 1 5 140 chain 28859 chr3 198022430 + 144783137 144783461 L1PA5 6144 - 2014 2341 88429 181 0 2 15 0 1 128 chain 176479 chr3 198022430 + 144783461 144785480 L1PA5 6144 + 4116 6143 21305 515 0 5 15 0 2 1058 0 1 431 chain 88372 chr3 198022430 + 144790783 144791972 THE1A-int 1579 - 384 1579 40234 89 7 14 329 45 45 421 1 0 80 11 11 206 chain 24330 chr3 198022430 + 144791972 144792315 THE1A 353 - 0 353 108489 33 0 2 88 13 22 98 2 1 109 chain 5694 chr3 198022430 + 144807230 144807301 LOR1a 498 + 142 213 188162 71 chain 25644 chr3 198022430 + 144829076 144829472 LTR7 482 - 13 482 101517 36 22 24 119 0 32 33 0 1 109 27 65 50 chain 10031 chr3 198022430 + 144830728 144830852 HERVH-int 3825 - 0 126 160425 27 0 2 97 chain 18137 chr3 198022430 + 144830986 144831254 LTR7 482 + 165 470 132499 59 0 1 21 1 32 11 5 6 20 0 2 102 12 14 37 chain 278512 chr3 198022430 + 144831268 144834692 HERVH-int 3825 + 0 3705 14721 56 0 3 314 5 1 158 5 0 38 1 0 10 1 0 24 1 93 82 1 0 60 1 4 386 15 0 200 9 0 29 0 2 10 1 0 309 0 1 15 8 1 6 0 7 1261 9 11 5 0 3 29 12 222 13 6 0 5 3 9 231 0 2 105 chain 17795 chr3 198022430 + 144875379 144875603 L1PA7 6471 + 6237 6461 133426 68 0 8 10 8 0 138 chain 63123 chr3 198022430 + 144941881 144942633 L1PA7 6471 - 5 758 51393 602 0 1 150 chain 3616 chr3 198022430 + 144942633 144942672 5S 121 + 49 88 213400 39 chain 28660 chr3 198022430 + 144948400 144948790 MLT2A1 477 - 95 477 90486 47 1 2 129 0 1 23 0 1 10 5 2 126 8 0 41 chain 56379 chr3 198022430 + 144953035 144953804 MER4E1 777 + 0 769 54916 23 6 9 278 1 0 75 0 1 5 1 0 156 11 0 13 0 1 4 2 1 45 9 17 106 6 5 12 0 2 16 chain 539328 chr3 198022430 + 144970408 144976409 L1PA3long 6157 - 1 6145 2924 1026 0 1 3959 0 3 258 0 128 33 6 7 65 0 9 514 0 1 140 chain 14447 chr3 198022430 + 144990285 144990453 L1PA2 6032 - 1 163 143052 141 6 0 21 chain 66206 chr3 198022430 + 145003687 145004464 L1PA5 6144 - 4 781 49999 117 2 1 189 0 1 469 chain 106386 chr3 198022430 + 145050998 145052300 LTR12C 1709 + 0 1709 35157 262 0 1 22 1 16 274 0 1 198 0 367 43 2 0 34 1 0 6 0 4 16 11 5 32 9 8 53 0 29 338 chain 12268 chr3 198022430 + 145052349 145052518 MER50B 698 + 497 661 151121 39 1 0 73 4 0 52 chain 4155 chr3 198022430 + 145160943 145160995 L1M1 2793 + 2628 2679 205165 46 1 0 5 chain 353418 chr3 198022430 + 145177351 145181217 L1PA3long 6157 - 15 3879 11514 2964 2 1 858 1 0 41 chain 3726 chr3 198022430 + 145187614 145187655 L1PB1 5432 - 484 525 211527 41 chain 19583 chr3 198022430 + 145187781 145188165 L1PB1 5432 + 4948 5311 128423 23 3 5 127 19 11 24 1 0 6 1 0 14 5 1 9 18 17 27 2 0 7 1 0 18 5 4 38 2 1 15 5 2 14 chain 75164 chr3 198022430 + 145195240 145196269 L1P1 4361 - 1086 2108 45941 91 8 7 415 5 12 220 3 0 6 7 10 200 13 0 61 chain 119372 chr3 198022430 + 145196284 145197779 L1PA7 6471 - 1492 2994 31174 30 1 0 275 0 8 22 0 1 114 0 4 69 9 0 70 0 1 209 0 6 136 1 0 28 1 0 98 0 1 410 1 0 11 1 0 9 chain 123372 chr3 198022430 + 145197779 145199271 L1PA7 6471 + 4976 6469 29926 428 0 2 101 1 2 112 1 0 72 12 11 765 chain 60314 chr3 198022430 + 145200039 145200730 SVA_D 2077 - 0 746 52675 617 0 1 16 1 3 11 21 73 25 chain 7207 chr3 198022430 + 145200730 145200832 SVA_D 2077 + 1222 1324 157833 102 chain 99592 chr3 198022430 + 145211827 145212948 L1PA4 6152 + 5031 6151 36885 346 1 0 774 chain 15628 chr3 198022430 + 145222726 145223022 THE1C 375 - 0 340 139500 140 7 62 59 65 45 15 0 9 10 chain 6430 chr3 198022430 + 145232210 145232405 MER34C2 569 + 226 428 181776 17 2 1 13 12 13 43 73 80 35 chain 143395 chr3 198022430 + 145232447 145235737 HERVL-int 5654 + 834 4951 25580 17 1 2 17 0 5 166 8 9 72 2 0 642 0 7 396 1 0 109 21 21 79 1 2 75 0 55 107 1328 2088 170 0 1 4 6 5 68 chain 58142 chr3 198022430 + 145234793 145235489 HERVL-int 5654 - 0 697 53852 466 1 0 149 0 2 80 chain 35638 chr3 198022430 + 145264082 145264557 LTR15 485 - 7 485 75359 21 0 1 14 2 0 5 1 0 157 0 4 101 0 2 22 0 2 21 4 0 24 0 1 13 11 11 79 chain 9550 chr3 198022430 + 145267601 145267755 MER84 505 - 351 505 162832 17 0 1 76 1 0 18 12 0 7 1 13 22 chain 30290 chr3 198022430 + 145269015 145269424 LTR7 482 - 0 482 83959 115 1 2 75 0 1 25 8 40 109 8 46 63 0 1 5 chain 284459 chr3 198022430 + 145270671 145274297 HERVH-int 3825 - 0 3825 14387 223 0 2 146 0 6 110 8 218 39 9 11 577 20 21 332 0 3 112 0 10 299 4 31 218 0 1 240 15 0 447 1 0 50 1 0 5 0 1 5 22 1 18 2 1 15 2 0 27 15 12 13 3 0 13 1 0 14 24 12 12 2 1 9 1 0 24 0 1 4 1 0 11 1 0 197 1 0 194 1 0 4 0 1 134 chain 27169 chr3 198022430 + 145274315 145274709 LTR7 482 - 16 482 95698 99 4 5 67 5 6 25 0 31 8 0 1 109 23 61 54 chain 103212 chr3 198022430 + 145293615 145294781 L1PA5 6144 + 4968 6130 35946 41 1 0 288 0 4 671 7 0 158 chain 307298 chr3 198022430 + 145331373 145335628 L1PA8A 6298 - 9 6264 13114 36 0 6 245 0 1 228 1 2 103 2 0 27 0 4 63 1 4 83 3 4 91 1 14 242 1 0 4 0 1 73 0 1 228 5 4 150 6 8 195 1 0 27 0 1 4 1 0 3 0 2005 9 0 26 615 0 1 131 0 1 429 0 6 74 30 29 121 14 13 127 1 0 32 4 6 81 0 1 5 1 0 215 1 0 73 6 4 5 1 0 21 2 0 38 0 1 18 5 1 20 8 0 9 9 10 46 2 0 7 12 0 14 1 0 5 1 0 8 2 1 21 7 4 15 2 0 13 1 0 6 1 0 12 2 1 9 1 0 18 20 11 21 3 0 19 22 12 9 1 0 18 1 0 6 chain 34781 chr3 198022430 + 145350938 145351488 MLT2A2 560 + 0 555 76505 115 64 65 101 11 12 71 0 1 106 15 17 67 chain 4490 chr3 198022430 + 145352432 145352525 MLT1C 463 + 368 462 200905 29 19 21 7 1 0 37 chain 24394 chr3 198022430 + 145367615 145367902 AluY 311 + 14 301 108109 118 0 1 6 1 0 162 chain 76958 chr3 198022430 + 145427035 145428001 LTR5_Hs 974 - 0 974 44995 142 19 18 31 7 7 119 0 1 193 0 4 447 0 4 8 chain 25624 chr3 198022430 + 145428281 145428633 LTR7 482 + 0 482 101605 71 4 93 102 0 31 9 8 18 158 chain 287189 chr3 198022430 + 145428635 145432221 HERVH-int 3825 + 0 3825 14208 451 0 3 79 5 0 37 1 0 9 36 25 15 0 37 26 1 0 9 7 27 57 9 8 347 1 0 101 15 0 117 0 1 83 9 0 26 0 2 10 1 0 309 0 1 292 22 27 309 0 1 5 5 4 245 0 1 406 9 11 39 8 218 260 0 2 225 chain 30692 chr3 198022430 + 145433479 145433882 LTR7 482 + 0 482 83048 69 8 46 118 0 31 50 0 10 158 chain 10047 chr3 198022430 + 145435170 145435306 THE1B 368 - 2 136 160338 63 1 0 60 2 1 10 chain 19595 chr3 198022430 + 145441704 145441988 THE1B 368 - 24 301 128400 51 1 0 101 2 0 30 2 1 30 15 12 52 chain 3084 chr3 198022430 + 145452587 145452620 MER34 540 + 449 482 223247 33 chain 77998 chr3 198022430 + 145488718 145489720 MER11A 1151 - 0 1151 44514 50 1 14 103 0 1 16 1 0 46 0 1 57 3 36 289 0 1 6 8 14 73 0 1 149 4 0 64 1 0 66 0 99 65 chain 9073 chr3 198022430 + 145511737 145511908 THE1B 368 - 197 368 165203 7 1 0 78 41 42 44 chain 6181 chr3 198022430 + 145520920 145521048 L1MB7 1623 - 194 318 183727 59 1 0 5 30 28 14 1 0 18 chain 23138 chr3 198022430 + 145529884 145530189 AluY 311 + 0 296 114946 46 10 7 52 0 1 25 2 0 157 5 0 8 chain 15246 chr3 198022430 + 145538606 145538955 L1PREC2 3366 - 322 630 140651 30 10 8 35 25 11 9 3 0 29 3 1 16 5 0 17 29 21 13 3 0 4 1 0 42 8 7 49 2 0 16 chain 157746 chr3 198022430 + 145539460 145541181 L1PA3long 6157 - 410 2125 23628 1554 6 0 161 chain 76106 chr3 198022430 + 145541182 145542030 L1PA3long 6157 + 3129 3977 45419 848 chain 17735 chr3 198022430 + 145551979 145552178 L1PA4 6152 - 611 810 133608 199 chain 53933 chr3 198022430 + 145552178 145552791 L1PA4 6152 + 5527 6141 56414 290 0 1 323 chain 413715 chr3 198022430 + 145591979 145597316 L1PA8 5853 - 0 5803 9706 93 7 6 13 2 1 39 25 23 70 2 0 44 1 0 169 5 1 54 0 146 11 0 1 152 3 4 17 2 0 6 0 8 121 0 1 301 0 9 617 0 1 511 2 3 490 5 9 72 1 2 4 1 0 439 4 1 130 6 10 193 13 2 50 32 3 235 6 5 218 1 2 202 0 1 310 18 0 5 0 4 45 0 1 301 0 11 53 13 383 142 32 12 14 1 0 9 5 3 20 chain 24369 chr3 198022430 + 145608878 145609174 L1PA5 6144 - 0 311 108268 138 12 27 146 chain 552718 chr3 198022430 + 145635690 145641839 L1PA3long 6157 + 1 6157 1106 159 2 0 5 0 2 31 1 7 2063 0 2 3554 1 0 333 chain 551071 chr3 198022430 + 145645565 145651578 L1PA2 6032 + 5 6025 1299 1273 0 5 1693 0 2 71 1 0 120 0 1 2855 chain 3415 chr3 198022430 + 145660942 145660980 MER5B 177 + 134 172 216854 38 chain 40322 chr3 198022430 + 145690205 145690742 MLT2A2 560 + 0 560 68849 17 0 2 131 13 33 56 0 1 4 2 1 231 0 1 83 chain 42151 chr3 198022430 + 145704015 145704498 L1PA5 6144 - 5 496 66452 143 0 7 13 0 1 327 chain 40602 chr3 198022430 + 145730059 145730522 LTR2 463 - 0 463 68434 463 chain 62168 chr3 198022430 + 145734156 145734906 LTR17 781 + 0 779 51821 119 0 9 199 0 1 64 1 0 108 3 0 232 9 31 5 0 1 10 chain 5135 chr3 198022430 + 145735324 145735386 L1MC4 1079 - 836 898 193732 62 chain 48488 chr3 198022430 + 145735386 145736071 LTR30 714 + 0 704 60120 16 0 1 68 1 0 168 13 18 168 11 22 54 0 5 100 1 0 4 0 3 12 5 0 7 6 8 38 1 0 12 chain 22231 chr3 198022430 + 145753007 145753279 AluSx4 309 + 21 296 119207 88 0 1 37 0 2 147 chain 52094 chr3 198022430 + 145812189 145813628 L1PA8 5853 + 4008 5478 26457 48 0 4 169 0 14 444 0 1 21 7 9 229 1 12 54 4 0 71 2 3 83 24 26 282 chain 168626 chr3 198022430 + 145813701 145815590 SVA_E 1901 + 0 1890 22207 153 1 0 664 1 0 19 1 0 87 0 46 5 1 0 41 6 13 239 48 0 623 chain 3957 chr3 198022430 + 145814919 145814967 SVA_E 1901 + 965 1013 100150 48 chain 13865 chr3 198022430 + 145815623 145816006 L1PA8 5853 + 5478 5853 26457 86 1 0 26 10 11 7 2 0 73 1 0 8 1 0 51 8 7 13 1 0 46 2 0 47 chain 23130 chr3 198022430 + 145829867 145830154 L1PA8 5853 + 5276 5564 114996 239 0 1 48 chain 19676 chr3 198022430 + 145830156 145830760 L1PA8 5853 + 5564 5853 128179 46 2 0 67 19 17 46 2 1 19 316 6 87 chain 84890 chr3 198022430 + 145831212 145832995 MER11B 1079 + 0 1079 41559 607 0 1 162 1 3 47 12 19 37 0 1 16 716 0 140 0 1 17 1 0 13 1 2 13 chain 83967 chr3 198022430 + 145837239 145838176 L1PA4 6152 - 9 946 41913 937 chain 27700 chr3 198022430 + 145838176 145838482 L1PA4 6152 + 4910 5216 93731 306 chain 22765 chr3 198022430 + 145838521 145838803 AluSg7 307 - 18 303 116756 31 0 1 43 2 4 206 chain 4827 chr3 198022430 + 145854720 145854797 Tigger4b 360 + 284 360 197051 13 2 0 5 3 4 54 chain 27255 chr3 198022430 + 145897466 145897979 L1PB1 5432 - 12 493 95420 15 2 1 13 1 0 21 1 0 24 2 0 11 11 8 19 19 8 4 1 0 16 1 0 43 1 0 12 15 15 4 1 0 39 2 0 9 16 11 33 3 0 5 9 10 160 chain 20637 chr3 198022430 + 145897999 145898300 L1PB1 5432 + 4626 4932 125164 127 0 1 57 41 45 76 chain 87652 chr3 198022430 + 145899957 145900949 L1PA4 6152 - 1 996 40509 332 0 1 63 0 3 458 1 0 138 chain 67833 chr3 198022430 + 145900949 145901711 L1PA4 6152 + 4410 5172 49273 762 chain 106480 chr3 198022430 + 145925647 145927201 L1PB1 5432 + 3896 5427 35124 127 4 0 141 0 4 34 0 1 334 0 17 71 3 1 198 15 17 124 8 7 18 1 7 40 22 25 36 14 7 9 1 0 24 1 0 9 1 0 11 5 1 8 2 0 52 1 0 13 5 4 45 6 0 12 16 4 30 2 0 4 1 0 15 2 0 14 10 0 6 0 6 19 1 0 13 1 0 18 2 0 5 chain 28601 chr3 198022430 + 145931904 145932209 AluYa5 310 - 7 310 90726 210 2 0 93 chain 129892 chr3 198022430 + 145942166 145943773 LTR12C 1709 - 0 1709 28110 168 0 102 105 2 1 105 0 4 106 53 1 5 1 0 235 0 40 628 0 6 161 0 4 38 chain 4222 chr3 198022430 + 145942655 145942702 LTR12C 1709 - 544 591 204275 47 chain 40075 chr3 198022430 + 145970213 145970700 MER9a1 513 + 0 513 69219 164 1 2 37 1 0 46 0 22 90 1 5 147 chain 7105 chr3 198022430 + 145972766 145972851 MSTB 430 + 323 415 176717 24 0 7 61 chain 33584 chr3 198022430 + 145987196 145987642 MLT2A1 477 - 0 477 78269 50 3 0 6 1 0 7 13 39 84 0 1 116 1 5 148 0 4 17 chain 19592 chr3 198022430 + 146001685 146001948 LTR14 556 - 291 556 128405 122 10 12 131 chain 498665 chr3 198022430 + 146005682 146011827 L1PA6 6164 - 4 6164 6917 50 7 3 102 6 1 81 0 3 243 3 0 265 9 8 405 0 4 1103 7 8 741 0 1 295 0 2 432 1 2 80 1 2 600 0 1 4 1 0 278 1 0 131 0 1 71 1 2 277 0 25 429 2 1 101 44 21 182 5 6 16 21 36 8 3 0 139 chain 10705 chr3 198022430 + 146033652 146033827 THE1C-int 1605 - 6 180 157394 52 29 28 94 chain 51514 chr3 198022430 + 146036005 146036605 L1PA5 6144 - 0 604 57955 251 0 4 349 chain 43310 chr3 198022430 + 146040534 146041083 THE1C-int 1605 + 1045 1596 65030 148 7 8 301 1 2 92 chain 19496 chr3 198022430 + 146041092 146041409 THE1C 375 + 0 318 128666 63 59 60 195 chain 101372 chr3 198022430 + 146041451 146042658 L1PA7 6471 + 5249 6461 36426 365 0 3 519 0 1 178 0 1 145 chain 16840 chr3 198022430 + 146050334 146050577 MLT2A1 477 - 1 256 136017 56 22 35 62 1 0 102 chain 79644 chr3 198022430 + 146064235 146065283 MER11C 1089 + 0 1063 43760 247 0 9 61 0 4 211 47 46 112 1 5 4 1 0 38 0 1 127 0 1 24 1 0 30 1 0 143 chain 24048 chr3 198022430 + 146071603 146072000 LTR7 482 + 2 469 110052 66 30 18 15 15 14 17 0 51 41 8 40 43 0 2 56 3 1 103 chain 284501 chr3 198022430 + 146072015 146075593 HERVH-int 3825 + 0 3825 14384 214 2 7 175 126 355 12 0 2 15 0 1 5 7 9 279 0 1 363 0 4 131 0 5 583 8 0 147 0 9 123 6 5 960 47 45 375 chain 28351 chr3 198022430 + 146076849 146077243 LTR7 482 + 0 475 91756 26 0 11 31 9 47 109 9 10 30 0 31 180 chain 28543 chr3 198022430 + 146079338 146079644 AluYg6 310 + 0 304 90990 131 2 0 173 chain 28947 chr3 198022430 + 146079872 146080270 LTR7 482 + 0 470 89235 51 26 64 97 0 1 11 0 1 33 0 1 6 0 31 174 chain 310021 chr3 198022430 + 146080284 146084093 HERVH-int 3825 + 0 3825 13004 532 5 0 38 0 2 7 2 1 24 1 14 12 25 22 4 1 0 40 12 15 68 1 0 59 0 3 88 41 42 49 8 9 4 1 0 707 0 2 1310 38 40 366 0 1 366 chain 32263 chr3 198022430 + 146121621 146122074 LTR10F 562 + 13 554 80417 36 0 4 71 17 0 19 1 88 17 1 17 77 5 7 123 4 0 82 chain 49164 chr3 198022430 + 146122792 146123349 LTR6B 557 - 0 557 59623 202 0 1 304 1 0 50 chain 151733 chr3 198022430 + 146124241 146127962 HERVS71-int 4705 - 429 4058 24370 8 1 0 17 116 80 22 2 0 8 2 0 9 1 0 5 32 28 6 1 0 46 23 18 12 5 3 11 2 1 39 13 12 9 1 0 10 6 4 26 9 6 17 1 0 22 4 1 33 13 10 20 12 8 26 20 15 29 1 0 5 2 0 5 11 8 12 1 0 19 1 0 35 1 0 16 2 0 55 2 0 3 1 0 32 1 0 29 1 0 4 27 22 57 2 0 17 1 0 16 35 29 27 1 0 5 1 0 9 16 10 19 890 1004 5 0 2 62 7 1 207 1 0 24 1 0 119 12 16 239 1 0 13 1 0 91 8 18 141 0 1 380 20 2 97 9 14 37 4 0 21 136 67 16 2 1 5 1 0 18 1 0 4 7 4 12 4 0 5 1 0 8 chain 47469 chr3 198022430 + 146129392 146129944 LTR6B 557 - 0 557 60856 56 0 4 101 0 1 35 0 1 309 1 0 50 chain 41214 chr3 198022430 + 146130370 146130885 LTR10A 586 - 12 586 67633 13 1 0 47 0 1 237 0 39 11 5 24 127 0 1 74 chain 9338 chr3 198022430 + 146141811 146141930 L1PA7 6471 + 6350 6470 163863 106 1 2 12 chain 509420 chr3 198022430 + 146152564 146158486 L1PA5 6144 - 4 6144 6211 1537 1 0 774 1 0 302 0 4 347 1 0 1743 0 1 78 13 18 160 17 11 132 1 0 9 1 2 709 5 222 91 chain 506517 chr3 198022430 + 146194902 146201211 L1PA6 6164 + 0 6147 6430 250 0 1 335 1 2 423 0 13 26 0 8 182 3 0 225 6 5 547 0 1 19 0 1 202 1 2 87 1 2 152 0 6 700 0 1 113 1 0 204 0 4 55 0 1 370 0 1 423 0 4 504 0 3 163 0 1 123 0 1 508 0 1 252 257 15 21 10 45 145 chain 11457 chr3 198022430 + 146200778 146200915 L1P1 4361 + 4109 4245 153081 41 1 0 95 chain 139836 chr3 198022430 + 146203858 146205689 L1PA10 4194 + 2337 4161 26164 293 1 0 18 4 2 24 0 2 278 0 3 99 0 1 33 8 9 437 23 23 194 4 0 36 2 1 292 6 4 30 3 0 34 1 0 11 chain 91516 chr3 198022430 + 146214912 146216304 LTR12C 1709 + 0 1709 39126 29 5 14 21 18 18 108 73 74 220 11 20 105 5 7 142 0 37 35 0 288 89 24 0 17 11 4 282 4 8 100 9 7 84 chain 85926 chr3 198022430 + 146240051 146241018 LTR5_Hs 974 + 1 974 41183 7 0 4 672 0 1 216 0 1 72 chain 36443 chr3 198022430 + 146256728 146257222 MER1A 529 - 0 498 74307 49 15 24 320 4 0 71 4 3 31 chain 185176 chr3 198022430 + 146263228 146265800 Charlie3 2679 - 0 2485 20483 63 18 13 341 1 3 4 0 1 751 4 9 118 1 3 87 1 0 4 0 1 57 19 1 276 4 0 15 42 15 297 48 3 51 1 2 5 1 0 23 0 4 92 4 8 12 14 14 20 7 0 173 0 1 18 chain 25971 chr3 198022430 + 146274796 146275137 MER9a3 513 + 132 513 100135 47 0 1 78 0 17 36 5 26 97 0 1 78 chain 19084 chr3 198022430 + 146282252 146282498 AluY 311 + 13 261 129866 7 0 1 111 18 19 110 chain 7755 chr3 198022430 + 146289263 146289356 U6 107 + 0 93 172567 93 chain 40859 chr3 198022430 + 146324222 146324693 L1PA5 6144 - 3 476 68084 427 0 1 14 0 1 30 chain 45744 chr3 198022430 + 146324693 146325205 L1PA5 6144 + 5159 5671 62277 512 chain 4791 chr3 198022430 + 146343493 146343617 L1MA3 4352 + 4200 4352 197447 34 22 54 14 0 1 5 0 14 8 19 0 22 chain 24120 chr3 198022430 + 146352308 146352606 L1PA4 6152 + 5861 6152 109639 141 9 0 73 0 1 67 0 1 8 chain 6498 chr3 198022430 + 146393272 146393375 MER3 215 - 24 143 181258 25 15 31 63 chain 25974 chr3 198022430 + 146402224 146402587 THE1A 353 - 0 353 100125 51 11 3 41 9 8 141 1 0 109 chain 121929 chr3 198022430 + 146402587 146404160 THE1A-int 1579 - 0 1579 30405 204 0 1 457 0 2 32 12 15 148 1 0 11 1 24 62 1 0 302 21 0 321 chain 43673 chr3 198022430 + 146417481 146418037 MLT2A2 560 - 0 560 64603 288 0 3 59 5 6 204 chain 12894 chr3 198022430 + 146420171 146420480 MER1B 344 + 2 339 148654 16 66 79 73 1 4 48 51 63 54 chain 24370 chr3 198022430 + 146438785 146439239 L1PA15 4387 - 21 453 108265 10 1 0 28 7 1 14 10 8 35 24 21 27 19 14 23 1 0 40 9 8 6 1 0 26 2 1 130 1 0 40 chain 418825 chr3 198022430 + 146444225 146449397 L1PA7 6471 + 1271 6469 9563 724 4 0 414 0 1 110 0 2 119 9 0 22 0 2 435 0 4 85 3 4 311 0 1 16 0 2 6 4 2 300 1 2 643 13 10 185 0 4 97 0 3 177 1 0 33 8 6 22 4 1 132 11 12 133 0 1 224 0 20 32 0 2 68 0 2 58 0 2 153 0 2 460 1 0 154 chain 329343 chr3 198022430 + 146450547 146454148 L1PA2 6032 - 11 3612 12225 2940 1 0 158 0 1 502 chain 27020 chr3 198022430 + 146471889 146472242 THE1A 353 - 1 353 96215 150 1 0 9 0 1 82 2 1 109 chain 26789 chr3 198022430 + 146476134 146476440 AluYf5 307 - 0 307 97016 99 1 2 206 chain 3253 chr3 198022430 + 146490697 146490736 LTR12C 1709 + 1121 1160 219951 39 chain 3016 chr3 198022430 + 146490847 146490880 LTR12C 1709 + 685 718 224702 33 chain 25417 chr3 198022430 + 146510369 146510648 AluYa5 310 - 2 284 102607 31 0 3 248 chain 18545 chr3 198022430 + 146513712 146513948 L1PA5 6144 + 5913 6144 131372 78 1 0 6 4 0 147 chain 5141 chr3 198022430 + 146518445 146518524 MADE1 96 - 1 96 193651 47 4 20 28 chain 23571 chr3 198022430 + 146634344 146634691 THE1B 368 + 1 368 112737 158 0 10 29 1 0 4 36 47 119 chain 20503 chr3 198022430 + 146650270 146650540 AluSp 311 - 24 311 125618 228 14 31 28 chain 10143 chr3 198022430 + 146652451 146652562 L1PA3long 6157 - 328 439 159884 111 chain 27918 chr3 198022430 + 146652562 146652872 L1PA3long 6157 + 5826 6136 93288 310 chain 29928 chr3 198022430 + 146654769 146655157 MLT2A1 477 + 0 385 85024 169 4 1 215 chain 188087 chr3 198022430 + 146655232 146657986 HERVL-int 5654 + 0 2506 20231 102 4 3 21 17 0 3 0 18 135 0 1 16 0 10 58 0 1 60 1 24 165 1 0 60 2 0 391 0 1 103 306 0 72 0 1 47 12 11 338 6 26 96 0 1 87 1 5 650 chain 533059 chr3 198022430 + 146658471 146664582 L1PA4 6152 - 11 6149 3839 845 1 2 1253 0 1 101 0 1 249 5 0 695 0 1 256 0 1 551 1 3 1223 0 4 181 6 9 218 1 3 85 2 3 6 0 1 308 2 16 122 chain 531 chr3 198022430 + 146678104 146678228 THE1B 368 - 0 132 132415 49 5 13 70 chain 346174 chr3 198022430 + 146678268 146682124 L1PA3long 6157 - 14 3853 11724 433 9 5 864 13 1 138 0 1 250 14 12 2135 chain 930 chr3 198022430 + 146682128 146682345 THE1B 368 - 132 368 132415 38 2 0 30 1 0 4 1 0 6 0 8 95 1 16 39 chain 17441 chr3 198022430 + 146710822 146711035 THE1-int 844 - 331 545 134402 205 0 1 8 chain 54827 chr3 198022430 + 146718458 146719130 L1PA7 6471 - 8 684 55817 169 0 5 157 0 1 203 2 0 141 chain 3502 chr3 198022430 + 146740072 146740116 L1MA5A 2387 - 86 129 215341 6 1 0 37 chain 66474 chr3 198022430 + 146742289 146743016 L1PA2 6032 + 5304 6031 49883 727 chain 23375 chr3 198022430 + 146761411 146761706 AluY 311 + 0 295 113784 127 5 0 109 5 10 49 chain 29028 chr3 198022430 + 146765223 146765606 MLT2A1 477 + 0 382 88862 167 10 7 59 0 1 4 7 6 69 0 2 67 chain 7769 chr3 198022430 + 146771090 146771447 MLT1B 390 + 22 352 172484 27 250 223 80 chain 64891 chr3 198022430 + 146777561 146778335 LTR17 781 + 0 772 50613 326 2 1 154 5 4 287 chain 5720 chr3 198022430 + 146781089 146781216 MER41-int 2638 + 112 232 187926 53 23 18 20 18 16 13 chain 290074 chr3 198022430 + 146781287 146784763 L1PA6 6164 + 2708 6162 14016 611 1 0 198 1 2 4 1 0 671 1 0 4 0 1 103 8 5 488 22 0 240 0 1 276 0 4 500 1 0 13 1 0 4 0 1 328 chain 103558 chr3 198022430 + 146787495 146788733 L1PA6 6164 - 2 1243 35845 6 4 0 259 1 0 379 0 1 92 1 0 329 0 2 132 0 6 35 chain 162937 chr3 198022430 + 146792792 146794876 L1PA8 5853 - 0 2092 22946 66 6 10 16 2 1 19 2 1 40 23 21 68 3 1 48 1 0 551 0 2 76 0 1 441 0 1 156 1 0 118 2 1 152 6 10 84 0 4 94 11 12 98 chain 29349 chr3 198022430 + 146798842 146799153 AluYb8 318 - 8 318 87302 184 1 0 126 chain 54492 chr3 198022430 + 146812755 146813350 L1PA3long 6157 - 1772 2367 55922 595 chain 159645 chr3 198022430 + 146813350 146815125 L1PA3long 6157 + 4370 6156 23378 187 0 16 787 2 1 348 5 1 446 chain 21418 chr3 198022430 + 146821918 146822242 THE1B 368 + 0 348 122453 44 0 15 49 2 0 64 2 1 23 1 3 102 0 1 4 19 28 14 chain 10497 chr3 198022430 + 146822585 146822805 MER47A 366 - 71 289 158260 47 54 52 63 5 6 5 1 0 45 chain 78790 chr3 198022430 + 146826125 146827004 L1PA3long 6157 - 0 884 44153 12 0 3 139 0 1 4 0 1 724 chain 55999 chr3 198022430 + 146827004 146827612 L1PA3long 6157 + 4680 5288 54978 608 chain 4829 chr3 198022430 + 146829411 146829571 L1PREC2 3366 - 291 428 197035 12 1 0 4 1 0 11 2 0 29 15 13 35 37 20 13 chain 502618 chr3 198022430 + 146841992 146848070 L1PA5 6144 - 6 6144 6688 542 11 0 246 0 5 116 0 2 190 0 1 65 0 1 458 1 8 637 0 1 708 1 0 844 2 1 295 1 0 585 1 0 263 9 0 87 0 3 8 4 1 53 0 21 166 9 26 66 0 1 5 1 0 336 0 2 47 11 12 125 53 79 132 chain 16674 chr3 198022430 + 146856133 146856475 THE1D 372 + 2 372 136481 47 6 26 90 70 81 61 14 9 17 7 9 30 chain 21989 chr3 198022430 + 146868488 146868748 AluY 311 + 20 280 120271 89 1 0 17 0 1 153 chain 15884 chr3 198022430 + 146872441 146873169 LTR12C 1709 + 650 1519 138699 99 48 44 44 1 0 46 8 49 22 41 0 13 381 527 25 chain 3016 chr3 198022430 + 146872709 146872746 LTR12C 1709 + 676 713 197248 37 chain 27887 chr3 198022430 + 146877535 146877830 AluYg6 310 + 0 295 93408 295 chain 13293 chr3 198022430 + 146893079 146893407 L1PB1 5432 - 20 315 147117 8 1 0 13 2 0 21 1 0 24 2 0 6 67 52 7 1 0 45 1 0 15 3 1 51 19 13 13 7 5 21 chain 47749 chr3 198022430 + 146894301 146894874 L1PBa 3878 + 993 1566 60655 573 chain 11342 chr3 198022430 + 146904448 146904603 L1PA8 5853 - 0 152 154915 90 1 0 18 8 6 38 chain 3711 chr3 198022430 + 146904681 146904720 L1PA8 5853 - 113 152 211777 39 chain 33829 chr3 198022430 + 146922222 146922695 LTR15 485 - 7 485 77894 19 0 1 16 2 0 5 1 0 157 0 4 125 0 6 19 4 0 22 0 1 13 11 11 79 chain 116874 chr3 198022430 + 146945637 146947048 L1PA6 6164 - 15 1429 32169 126 8 0 10 2 10 170 1 2 125 1 0 309 0 3 79 1 0 510 0 1 69 chain 93278 chr3 198022430 + 146962693 146963904 LTR12C 1709 - 0 1709 38572 14 0 1 69 1 0 12 0 131 167 1 0 5 11 12 70 0 4 106 3 319 31 6 1 192 5 1 193 0 43 104 0 10 8 0 2 119 4 5 90 chain 29019 chr3 198022430 + 146966859 146967164 AluYb8 318 + 0 305 88910 305 chain 14268 chr3 198022430 + 146969250 146969553 L1PB1 5432 + 5121 5392 143658 13 1 0 10 1 0 12 2 0 3 2 0 9 2 0 25 7 0 27 2 1 14 1 2 44 1 0 15 28 16 20 1 0 14 2 0 27 1 0 19 chain 112011 chr3 198022430 + 146989197 146991087 L1MA1 4479 + 242 4190 33663 32 8 6 83 6 8 21 1 0 50 9 1816 14 22 1 115 27 28 51 3 10 122 10 9 62 1 0 101 2 0 33 2 1 61 1 0 10 1 2 80 1 0 25 22 20 81 0 1 6 1 0 46 1 0 4 0 1 7 10 8 16 4 0 78 1 0 12 13 9 11 9 1 22 17 15 68 4 0 129 1 0 196 0 317 38 16 15 22 2 0 30 36 28 8 7 0 18 chain 99277 chr3 198022430 + 146993131 146994431 L1P2 5180 + 1884 3184 36956 173 4 6 79 8 15 162 10 0 47 0 1 817 chain 122762 chr3 198022430 + 147003610 147005183 THE1B-int 1605 - 0 1605 30130 659 0 1 268 0 3 211 6 31 162 8 9 233 14 16 12 chain 62823 chr3 198022430 + 147025148 147025910 L1PA7 6471 - 10 773 51531 139 7 0 8 0 7 175 0 1 433 chain 13859 chr3 198022430 + 147025911 147026070 L1PA7 6471 + 5542 5700 145035 79 1 0 79 chain 204969 chr3 198022430 + 147032940 147035547 L1P2 5180 - 2529 5178 18858 60 7 10 262 1 0 38 9 14 535 0 16 761 1 26 137 1 0 5 1 0 255 15 0 8 3 16 261 1 0 86 50 49 110 chain 48903 chr3 198022430 + 147038720 147039256 L1PA3long 6157 - 0 538 59805 153 0 2 383 chain 71795 chr3 198022430 + 147202744 147203561 L1PA5 6144 - 9 824 47567 55 2 1 188 1 0 571 chain 44680 chr3 198022430 + 147212272 147212814 L1PA7 6471 + 5931 6467 63397 398 1 0 132 5 0 6 chain 28195 chr3 198022430 + 147229063 147229397 L1PA7 6471 - 10 344 92324 334 chain 15469 chr3 198022430 + 147241477 147241767 L1PA15 4387 - 73 352 139992 37 18 15 17 38 33 27 2 1 53 1 0 27 1 0 69 chain 13543 chr3 198022430 + 147243534 147243712 MER30 238 - 0 197 146200 107 5 24 66 chain 2940 chr3 198022430 + 147255249 147255284 L1M3 994 + 799 834 226325 35 chain 10967 chr3 198022430 + 147256480 147256630 L1PREC2 3366 - 567 715 156332 44 9 7 97 chain 28605 chr3 198022430 + 147256640 147257003 MLT2A2 560 + 0 368 90713 113 1 3 76 15 18 158 chain 5281 chr3 198022430 + 147275889 147276033 Charlie1a 1436 - 232 381 192199 30 7 8 11 22 25 24 14 16 4 1 0 31 chain 11670 chr3 198022430 + 147277757 147277929 Tigger3a 397 + 43 264 153601 32 16 65 124 chain 516969 chr3 198022430 + 147311632 147317743 L1PA5 6144 - 6 6144 5485 55 0 6 80 1 2 6 1 0 265 6 8 993 0 1 857 0 1 2301 14 15 331 2 1 47 9 0 620 1 0 380 4 16 18 1 15 40 0 1 79 chain 10270 chr3 198022430 + 147319522 147319651 L1PA7 6471 - 3 129 159282 7 3 0 119 chain 7133 chr3 198022430 + 147374088 147374193 Arthur1B 1073 - 765 870 176527 61 1 2 31 1 0 11 chain 204273 chr3 198022430 + 147400484 147402806 L1PA5 6144 - 3 2324 18907 12 3 0 592 1 4 6 3 0 556 0 1 290 0 1 859 chain 519549 chr3 198022430 + 147424631 147431395 L1PA7 6471 - 1 6468 5208 160 0 2 67 1 5 9 4 5 188 0 9 222 303 0 79 0 1 106 0 3 365 0 1 438 0 2 136 0 4 89 0 1 4 1 0 115 1 2 964 30 30 87 10 24 58 58 3 188 0 4 458 1 0 505 0 2 702 14 17 134 12 13 1210 0 10 45 chain 436902 chr3 198022430 + 147437720 147443375 HERVL-int 5654 + 0 5654 9131 20 2 1 61 0 1 281 7 5 47 0 2 175 10 0 62 16 9 101 7 3 57 1 7 386 0 1 441 26 27 205 0 1 483 1 2 133 0 1 448 0 3 39 0 1 202 0 10 5 2 1 189 6 18 4 0 1 213 1 0 128 21 7 246 0 3 291 0 1 43 1 5 268 0 1 579 30 14 163 18 20 18 0 3 218 chain 125541 chr3 198022430 + 147444004 147445377 L1PA3long 6157 + 4779 6152 29230 1373 chain 127043 chr3 198022430 + 147445618 147447033 L1PA5 6144 + 4676 6092 28803 74 0 1 1341 chain 11583 chr3 198022430 + 147463462 147463591 L1PA5 6144 + 5902 6031 153955 129 chain 10421 chr3 198022430 + 147463592 147463705 L1PA5 6144 + 6031 6144 158591 113 chain 125445 chr3 198022430 + 147465468 147467439 L1PA14 3548 - 104 2020 29265 23 5 6 19 1 0 9 13 10 36 15 10 110 1 0 24 0 1 59 1 0 6 2 0 5 16 12 91 0 5 13 8 4 48 2 0 12 8 7 14 2 0 30 0 1 116 0 3 53 2 1 28 1 0 158 0 3 166 27 31 286 14 12 51 79 33 91 0 1 58 10 11 26 6 6 61 7 8 158 chain 16565 chr3 198022430 + 147471173 147471449 L1PA8 5853 + 5592 5853 136749 15 6 4 66 1 0 15 2 0 48 2 1 19 9 8 36 8 0 49 chain 24535 chr3 198022430 + 147543636 147543962 AluY 311 + 1 311 107335 122 1 0 3 15 0 185 chain 13474 chr3 198022430 + 147547703 147547876 L1PA8 5853 + 5682 5853 146441 62 2 1 17 1 0 91 chain 75405 chr3 198022430 + 147597869 147599060 MER52-int 3354 - 83 1247 45819 24 1 0 16 1 0 8 1 0 7 1 0 28 19 13 13 1 0 30 14 12 12 1 0 36 1 0 4 2 0 11 2 0 9 8 6 25 1 0 33 2 0 38 5 4 13 3 1 33 1 0 15 2 0 41 1 0 7 1 0 47 6 5 248 10 14 62 0 4 28 13 12 13 1 0 61 0 1 32 1 0 198 chain 17922 chr3 198022430 + 147614411 147614619 L1PA5 6144 - 2 209 133054 154 1 0 53 chain 28999 chr3 198022430 + 147628641 147628947 AluYb8 318 - 12 318 88988 306 chain 3656 chr3 198022430 + 147643042 147643080 MER57A1 433 - 71 109 212659 38 chain 29390 chr3 198022430 + 147690299 147690606 AluYa5 310 - 3 310 87122 307 chain 5932 chr3 198022430 + 147692943 147693044 MER82 654 - 55 212 185859 22 21 77 58 chain 49339 chr3 198022430 + 147697201 147697776 L1PA7 6471 + 5889 6464 59494 575 chain 112120 chr3 198022430 + 147706292 147707731 LTR12C 1709 - 0 1709 33633 82 1 0 69 1 0 330 11 4 6 0 1 99 3 1 5 1 0 106 0 6 14 0 278 245 4 0 156 50 51 256 chain 4326 chr3 198022430 + 147721769 147721836 MADE1 96 - 0 92 202877 23 6 31 38 chain 3835 chr3 198022430 + 147740140 147740182 MADE1 96 - 54 96 209848 42 chain 13317 chr3 198022430 + 147749772 147749972 L1PA8 5853 - 0 197 147020 93 7 6 61 17 15 22 chain 5966 chr3 198022430 + 147798629 147798704 MADE1 96 + 5 96 185538 46 0 16 29 chain 78360 chr3 198022430 + 147829554 147830604 MER11C 1089 + 0 1073 44339 247 0 9 61 0 4 65 1 0 147 5 33 10 30 7 107 1 5 4 1 0 38 0 1 51 0 1 75 0 1 54 1 0 141 0 1 11 chain 43958 chr3 198022430 + 147846144 147846698 MLT2A2 560 + 0 560 64256 66 0 1 129 8 13 351 chain 82188 chr3 198022430 + 147851472 147852577 HERVL-int 5654 + 4508 5640 42685 53 0 3 46 1 0 37 12 13 97 0 6 93 9 30 127 1 2 414 4 0 174 0 1 22 1 0 14 chain 42245 chr3 198022430 + 147852593 147853138 MLT2A2 560 + 0 560 66342 8 0 6 52 0 1 390 0 6 37 8 10 50 chain 29872 chr3 198022430 + 147869315 147869744 LTR7B 505 + 0 503 85198 105 0 10 69 6 68 18 8 10 38 0 1 43 1 0 26 0 1 52 15 14 48 chain 295699 chr3 198022430 + 147869746 147873475 HERVH-int 3825 + 0 3825 13662 211 0 11 111 1 0 169 0 1 27 1 0 40 1 0 10 1 0 12 4 0 5 13 7 14 1 0 15 3 0 46 86 0 41 42 0 59 1 0 447 15 0 459 8 35 280 0 4 883 0 1 155 40 42 35 8 218 260 0 2 225 chain 3126 chr3 198022430 + 147870473 147870514 HERVH-int 3825 + 677 717 222433 20 1 0 20 chain 30037 chr3 198022430 + 147874718 147875141 LTR7B 505 + 0 496 84694 105 0 10 60 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 19 0 1 32 14 13 21 2 0 21 chain 79782 chr3 198022430 + 147876663 147877717 MER11C 1089 + 0 1069 43691 246 0 9 62 0 4 65 1 0 146 47 46 112 11 13 34 0 1 127 0 1 54 1 0 144 0 1 4 chain 28207 chr3 198022430 + 147912482 147912833 L1PA7 6471 - 7 368 92278 31 0 9 176 0 2 115 1 0 28 chain 111861 chr3 198022430 + 147916062 147917359 L1PA5 6144 - 0 1288 33701 10 5 0 157 5 0 1064 0 1 56 chain 52373 chr3 198022430 + 147949419 147950178 MER4E1 777 - 8 777 57379 228 18 0 105 7 8 47 0 7 26 30 58 122 14 13 44 1 0 86 6 0 25 chain 8240 chr3 198022430 + 147978095 147978215 THE1-int 844 + 647 772 169735 41 10 15 69 chain 40633 chr3 198022430 + 147989768 147990316 MER41A 554 - 0 554 68393 70 10 15 41 15 16 412 chain 4192 chr3 198022430 + 147997993 147998075 LTR12C 1709 - 672 795 164042 20 0 41 62 chain 14673 chr3 198022430 + 147998082 147998267 LTR12C 1709 - 547 781 142354 23 6 53 91 0 2 65 chain 17850 chr3 198022430 + 148018010 148018345 THE1C 375 - 27 361 133242 6 0 1 87 45 41 19 8 9 98 30 31 42 chain 50176 chr3 198022430 + 148019639 148020246 L1PA7 6471 - 7 614 58883 310 0 1 29 0 1 163 2 0 103 chain 343441 chr3 198022430 + 148021258 148025018 L1PA3long 6157 + 2391 6157 11800 2914 1 5 76 0 2 769 chain 22485 chr3 198022430 + 148040204 148040480 AluY 311 + 4 281 118081 124 4 5 148 chain 89103 chr3 198022430 + 148051815 148052953 L1PA8A 6298 - 8 1159 39966 23 0 1 74 12 12 144 8 15 12 0 3 433 17 14 57 9 13 277 0 1 72 chain 549778 chr3 198022430 + 148065059 148071192 L1PA4 6152 + 0 6151 1477 131 0 4 1592 0 1 841 0 4 709 2 0 2000 0 4 12 0 4 78 0 2 619 0 1 149 chain 54084 chr3 198022430 + 148078320 148078939 L1PA5 6144 - 3 627 56303 284 0 1 155 2 6 178 chain 36349 chr3 198022430 + 148101138 148101574 L1PA7 6471 - 20 456 74434 436 chain 39366 chr3 198022430 + 148132030 148132481 LTR7 482 + 0 482 70223 263 1 32 187 chain 297605 chr3 198022430 + 148132483 148136174 HERVH-int 3825 + 0 3825 13546 212 0 11 311 5 0 36 1 0 10 65 0 9 4 0 14 9 1 15 1 0 12 3 0 22 42 0 38 2 22 16 2 1 9 0 5 35 1 0 447 15 0 459 4 31 284 1 5 1115 10 220 249 0 2 81 0 1 152 chain 38472 chr3 198022430 + 148137432 148137883 LTR7 482 + 0 482 71487 254 1 0 12 0 31 68 1 2 115 chain 66243 chr3 198022430 + 148147871 148148586 L1PA2 6032 - 670 1385 49985 715 chain 61237 chr3 198022430 + 148148586 148149245 L1PA2 6032 + 5373 6032 52236 659 chain 27486 chr3 198022430 + 148154675 148155606 L1MA1 4479 - 286 818 94694 4 1 0 18 30 20 10 2 1 32 10 8 20 10 9 8 0 3 108 4 0 74 359 3 16 1 0 14 19 16 63 31 11 16 2 0 22 6 5 51 chain 21981 chr3 198022430 + 148155027 148155311 L1PA7 6471 - 1 286 120310 155 16 17 113 chain 39573 chr3 198022430 + 148178177 148178675 L1PBa 3878 - 3122 3620 69614 127 0 1 4 1 0 366 chain 182569 chr3 198022430 + 148178675 148181499 L1PB1 5432 + 2894 5422 20728 242 0 4 317 4 5 23 1 2 245 2 0 19 0 2 148 0 1 83 3 0 198 0 45 172 7 8 89 0 1 52 2 0 78 3 0 75 3 6 95 10 9 290 3 2 11 7 0 22 1 0 4 37 30 48 2 1 15 1 0 44 306 0 16 24 12 19 2 0 5 2 1 13 2 0 24 1 0 17 5 4 13 1 0 18 chain 4323 chr3 198022430 + 148182424 148182502 MADE1 96 + 5 96 202925 29 17 30 32 chain 465465 chr3 198022430 + 148196026 148202075 L1PA6 6164 + 365 6156 8204 86 19 0 64 8 9 45 1 0 106 3 0 112 0 17 273 28 28 252 262 0 386 1 11 459 0 2 119 0 4 337 0 5 172 18 17 92 10 13 210 23 7 216 0 1 94 0 1 191 3 0 20 0 1 370 0 1 562 0 1 481 1 0 283 0 3 237 8 6 343 18 18 136 chain 11944 chr3 198022430 + 148211213 148211370 MSTD 398 + 214 379 152423 16 0 8 141 chain 273166 chr3 198022430 + 148221653 148225042 L1PA7 6471 - 1 3383 15008 112 12 5 38 1 0 6 1 2 37 11 14 124 12 14 23 5 6 327 4 1 51 0 1 88 1 0 142 0 3 17 0 1 12 0 1 460 0 1 886 0 1 161 0 1 52 1 0 290 4 1 9 0 5 93 5 6 156 21 8 227 chain 10202 chr3 198022430 + 148232201 148232325 L1PA16 3655 - 93 217 159614 124 chain 60668 chr3 198022430 + 148243155 148243977 LTR12D 1347 + 336 1346 52485 99 0 150 114 1 42 29 4 5 45 0 1 199 37 32 29 2 1 228 0 1 35 chain 2956 chr3 198022430 + 148243646 148243682 LTR12D 1347 + 1117 1153 186866 36 chain 5173 chr3 198022430 + 148262016 148262076 L1PREC2 3366 + 2659 2719 193325 60 chain 26965 chr3 198022430 + 148263500 148263877 MLT2A1 477 - 83 468 96389 46 0 1 18 6 5 15 7 8 128 1 5 27 1 2 89 0 2 39 chain 5200 chr3 198022430 + 148274590 148274669 MADE1 96 + 0 96 193017 23 5 22 51 chain 291033 chr3 198022430 + 148276719 148280154 L1PA6 6164 - 10 3453 13957 213 0 3 1289 0 1 282 1 5 60 0 1 347 0 1 98 6 4 152 8 0 174 0 2 255 0 3 85 22 25 443 chain 103170 chr3 198022430 + 148280154 148281341 L1PA6 6164 + 1528 2717 35803 513 0 1 283 0 1 391 chain 352478 chr3 198022430 + 148281476 148285396 HERVK-int 6823 - 2935 6823 11536 986 1 0 1067 1 0 7 2 0 372 1 0 439 1 0 310 1 0 21 1 0 26 2 0 206 1 0 304 12 0 17 15 12 21 1 0 39 1 0 18 2 1 23 1 0 3 1 0 11 1 0 5 chain 23263 chr3 198022430 + 148287252 148287541 L1PA6 6164 - 3 292 114368 144 1 0 6 0 1 138 chain 55075 chr3 198022430 + 148288395 148289109 LTR12_ 688 + 0 688 55660 16 19 18 43 25 0 390 0 1 43 2 1 176 chain 395337 chr3 198022430 + 148289130 148294010 HERV9-int 5642 + 0 4824 10264 74 0 1 219 0 3 302 8 4 109 0 4 69 7 6 70 1 0 231 80 0 14 3 0 62 0 9 40 4 3 266 0 11 82 8 4 290 0 1 74 1 0 538 4 8 705 0 1 218 1 8 281 2 8 192 1 0 450 0 1 150 8 0 182 0 1 5 1 0 128 chain 66648 chr3 198022430 + 148295380 148296201 LTR12 884 + 0 882 49808 24 1 0 31 0 41 261 0 22 330 1 0 173 chain 102624 chr3 198022430 + 148297513 148298628 L1PA3long 6157 + 5042 6157 36101 1115 chain 6858 chr3 198022430 + 148316562 148316634 tRNA-His-CAY 72 - 0 72 178524 72 chain 120514 chr3 198022430 + 148325724 148327427 L1PB1 5432 - 12 1650 30871 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 15 6 7 3 0 16 1 0 43 1 0 16 2 1 48 37 30 7 1 0 21 1 0 8 28 3 471 4 0 8 5 0 604 0 1 237 chain 4615 chr3 198022430 + 148335681 148335803 LTR12 884 + 70 142 199457 12 25 0 36 28 3 21 chain 12382 chr3 198022430 + 148347339 148347489 MLT2D 439 + 46 196 150701 150 chain 30946 chr3 198022430 + 148355691 148356258 L1PB1 5432 + 4873 5424 82607 230 2 3 10 3 0 22 42 34 41 12 24 44 1 0 21 15 6 17 10 7 14 3 1 5 0 1 17 1 0 21 1 0 13 2 1 15 1 0 4 chain 5104 chr3 198022430 + 148356350 148356427 MER2 342 + 136 215 194046 28 5 7 44 chain 5763 chr3 198022430 + 148359611 148359683 MADE1 96 + 0 96 187508 22 0 24 50 chain 3293 chr3 198022430 + 148394629 148394667 tRNA-Gly-GGA 38 + 0 38 219135 38 chain 18938 chr3 198022430 + 148396073 148396287 L1PA3long 6157 - 0 212 130266 125 2 0 87 chain 8922 chr3 198022430 + 148396287 148396389 L1PA3long 6157 + 5853 5955 166022 102 chain 287987 chr3 198022430 + 148407555 148410784 L1PA3long 6157 - 0 3233 14158 10 0 1 179 0 1 654 0 5 192 8 0 326 1 2 494 0 1 201 0 2 879 1 2 284 chain 29572 chr3 198022430 + 148450517 148450826 AluYa5 310 - 1 310 86313 309 chain 42045 chr3 198022430 + 148471018 148471546 LTR10F 562 - 0 561 66567 284 2 0 13 0 24 10 3 14 216 chain 26461 chr3 198022430 + 148472179 148472479 AluY 311 + 0 297 98199 28 1 0 92 2 0 177 chain 145246 chr3 198022430 + 148478429 148480165 L1PA7 6471 + 4724 6466 25286 210 1 0 15 2 0 598 0 1 541 0 1 8 0 2 9 2 0 199 9 16 142 chain 58759 chr3 198022430 + 148483700 148484389 L1P2 5180 - 3226 3915 53548 689 chain 136379 chr3 198022430 + 148498435 148500000 L1PA5 6144 - 9 1580 26771 37 1 0 810 1 2 125 0 6 591 chain 380472 chr3 198022430 + 148500000 148504547 L1P2 5180 - 603 5174 10740 182 0 1 221 0 2 961 0 1 694 0 1 518 1 0 246 0 1 179 1 0 578 22 43 12 0 4 140 1 0 6 2 1 271 1 0 8 1 0 260 1 0 63 1 2 31 2 1 144 chain 22966 chr3 198022430 + 148513601 148513880 AluSg4 309 + 10 286 115779 16 1 0 98 4 2 160 chain 86488 chr3 198022430 + 148519626 148520634 L1PA5 6144 + 5131 6143 40972 39 5 1 79 0 4 43 0 4 28 0 4 442 2 1 360 3 0 7 chain 25881 chr3 198022430 + 148520938 148521403 MER34B 572 - 40 566 100524 13 10 12 85 1 4 121 23 31 35 45 81 72 1 4 27 5 14 27 chain 130226 chr3 198022430 + 148528616 148530188 THE1A-int 1579 + 0 1579 28039 85 2 0 276 1 2 139 0 1 297 0 1 693 0 5 70 0 1 9 chain 28428 chr3 198022430 + 148530188 148530543 THE1A 353 + 0 353 91472 111 1 0 91 1 0 151 chain 6848 chr3 198022430 + 148530613 148530696 MER20 218 + 135 218 178590 83 chain 29086 chr3 198022430 + 148566799 148567110 AluYb8 318 - 6 318 88613 98 0 1 213 chain 11449 chr3 198022430 + 148570082 148570266 MER20 218 + 29 214 154503 26 1 0 26 7 12 27 1 0 39 1 0 4 4 0 5 0 3 43 chain 9339 chr3 198022430 + 148638556 148638683 L1MB1 2102 + 205 333 163854 100 1 0 15 1 3 10 chain 4162 chr3 198022430 + 148670873 148670930 MLT1K 546 - 13 69 205065 21 1 0 35 chain 7154 chr3 198022430 + 148675242 148675347 MLT1B 390 - 16 110 176378 85 11 0 9 chain 26434 chr3 198022430 + 148677749 148678121 THE1B 368 - 0 368 98293 75 1 0 99 0 2 20 1 0 105 27 23 44 chain 4652 chr3 198022430 + 148683643 148683713 ORSL 269 - 10 75 199041 57 5 0 8 chain 2957 chr3 198022430 + 148684117 148684180 MIR 256 + 142 207 225918 14 17 19 32 chain 23889 chr3 198022430 + 148685409 148685714 AluSp 311 + 10 305 110961 167 6 1 121 5 0 6 chain 20197 chr3 198022430 + 148695021 148695363 THE1B 368 + 0 368 126536 44 5 20 108 66 77 119 chain 3279 chr3 198022430 + 148750244 148750281 MADE1 96 - 58 95 219381 37 chain 20029 chr3 198022430 + 148753248 148753470 AluYf4 310 + 85 307 127046 222 chain 29047 chr3 198022430 + 148774614 148774923 AluYf4 310 + 0 309 88776 309 chain 8274 chr3 198022430 + 148812161 148812253 HY1 111 - 19 111 169547 92 chain 108456 chr3 198022430 + 148814639 148816200 LTR12C 1709 - 0 1709 34575 84 15 14 53 1 0 145 1 0 185 0 4 105 4 2 5 1 0 98 0 278 257 207 34 45 0 1 18 0 43 162 0 1 175 chain 6320 chr3 198022430 + 148822862 148822949 Tigger4 2445 - 609 697 182643 68 1 2 18 chain 95889 chr3 198022430 + 148827073 148828382 LTR12C 1709 + 84 1709 37848 36 1 0 92 3 1 64 4 0 9 6 10 42 11 51 74 0 2 6 10 0 179 0 278 143 0 47 95 24 0 9 13 6 312 1 0 7 5 0 80 1 0 82 chain 20477 chr3 198022430 + 148831289 148831680 THE1A 353 - 0 353 125693 30 55 17 72 1 0 4 0 1 36 5 11 8 6 0 47 10 8 6 0 2 17 5 4 42 0 1 47 chain 3488 chr3 198022430 + 148831324 148831371 THE1A 353 + 273 315 215571 34 5 0 8 chain 5773 chr3 198022430 + 148831680 148831747 LOR1-int 1871 - 1714 1781 187419 67 chain 20675 chr3 198022430 + 148833033 148833353 MER1B 344 + 30 335 125052 33 3 0 37 6 3 113 4 0 51 23 18 50 chain 21104 chr3 198022430 + 148913412 148913667 AluY 311 + 43 297 123541 65 0 1 21 2 0 167 chain 40890 chr3 198022430 + 148914595 148915046 LTR7 482 + 0 482 68037 263 1 32 187 chain 11807 chr3 198022430 + 148937479 148937633 THE1B-int 1605 + 0 156 153001 12 3 5 139 chain 5477 chr3 198022430 + 148937703 148937763 THE1B 368 + 246 306 190243 60 chain 37443 chr3 198022430 + 148950043 148950451 L1PA2 6032 - 11 419 72898 408 chain 19172 chr3 198022430 + 148950451 148950662 L1PA2 6032 + 5426 5637 129606 211 chain 11379 chr3 198022430 + 148956175 148956307 L1PA10 4194 + 2273 2405 154787 132 chain 96207 chr3 198022430 + 149001625 149003581 LTR12C 1709 + 0 1709 37764 232 6 5 4 0 1 72 1 0 24 0 43 78 0 1 4 3 0 6 7 1 27 0 1 151 0 278 160 0 47 89 11 4 177 0 106 47 1 0 60 712 7 84 chain 6302 chr3 198022430 + 149002804 149002877 LTR12C 1709 + 1636 1709 182782 73 chain 42883 chr3 198022430 + 149002957 149003475 HERV9-int 5642 + 0 518 65555 518 chain 13654 chr3 198022430 + 149012398 149012711 HUERS-P2-int 2744 + 2447 2742 145766 65 2 0 32 4 0 9 14 12 16 49 48 26 3 0 10 5 6 18 1 0 8 3 1 5 2 0 12 2 0 27 chain 5622 chr3 198022430 + 149021027 149021106 MADE1 96 - 0 96 188852 29 2 19 48 chain 31356 chr3 198022430 + 149041262 149041667 MER11A 1151 + 0 501 81892 61 1 100 66 2 1 66 4 0 37 0 1 111 0 1 57 chain 22945 chr3 198022430 + 149052656 149052913 L1PA2 6032 + 5775 6032 115885 257 chain 48682 chr3 198022430 + 149055250 149055806 L1PA5 6144 + 5586 6144 59971 130 0 2 426 chain 9845 chr3 198022430 + 149077117 149077242 L1MA9 1812 + 1175 1299 161361 14 1 0 110 chain 5125 chr3 198022430 + 149097803 149097866 THE1C 375 + 259 322 193831 63 chain 102121 chr3 198022430 + 149097866 149099196 SVA_D 2077 + 850 2074 36230 28 1 0 25 1 0 14 2 0 27 126 0 48 0 51 329 6 18 11 41 0 530 0 2 141 chain 7654 chr3 198022430 + 149097964 149098090 SVA_D 2077 + 1254 1297 97852 10 88 3 4 0 1 8 0 1 16 chain 3258 chr3 198022430 + 149098484 149098525 SVA_D 2077 + 1262 1303 68557 41 chain 42215 chr3 198022430 + 149103437 149104110 MER51A 677 - 16 677 66382 56 0 4 10 8 0 109 6 7 200 1 0 28 99 81 25 0 9 89 1 2 41 chain 23910 chr3 198022430 + 149110273 149110550 AluSp 311 + 21 298 110862 277 chain 16799 chr3 198022430 + 149120729 149120949 L1PA8A 6298 - 7 213 136120 110 14 0 96 chain 12513 chr3 198022430 + 149157813 149158031 MER2 342 + 96 295 150190 18 9 6 104 34 18 53 chain 123282 chr3 198022430 + 149162153 149163582 SVA_C 1631 - 0 1631 29948 10 2 0 7 4 0 609 2 96 67 0 1 45 0 77 41 0 37 158 0 2 157 3 1 303 6 5 15 chain 17190 chr3 198022430 + 149169019 149169229 MSTA-int 1630 - 0 209 135061 116 1 0 93 chain 20590 chr3 198022430 + 149175882 149176243 THE1D 372 - 0 372 125332 178 81 82 35 6 16 61 chain 23425 chr3 198022430 + 149196552 149196853 AluSq10 312 - 17 312 113505 40 3 0 127 3 0 128 chain 22417 chr3 198022430 + 149214297 149214569 AluSp 311 + 11 296 118392 29 0 13 243 chain 23951 chr3 198022430 + 149230768 149231067 AluSp 311 + 2 300 110613 226 11 10 62 chain 22167 chr3 198022430 + 149268808 149269096 AluSp 311 + 5 292 119509 14 4 5 189 1 0 68 1 0 11 chain 5839 chr3 198022430 + 149269396 149269485 MER81 114 - 1 92 186773 47 11 13 31 chain 24015 chr3 198022430 + 149283436 149283738 AluSp 311 + 20 305 110241 192 18 1 92 chain 4367 chr3 198022430 + 149316113 149316190 MIRb 242 - 59 140 202355 24 13 17 40 chain 2892 chr3 198022430 + 149364028 149364077 MER5C 305 - 2 57 227172 30 4 9 4 0 1 11 chain 72060 chr3 198022430 + 149410721 149411898 L1MA3 4352 + 2185 3345 47454 128 1 0 151 79 76 46 1 0 286 0 1 34 14 0 116 67 36 112 0 30 65 32 34 45 chain 20650 chr3 198022430 + 149415937 149416303 THE1C 375 + 0 375 125132 13 2 0 34 0 6 17 20 21 88 59 64 107 1 0 25 chain 24796 chr3 198022430 + 149417076 149417370 AluSp 311 - 8 302 105908 294 chain 4564 chr3 198022430 + 149452345 149452443 MER2 342 - 98 201 200058 36 22 29 6 2 0 32 chain 28466 chr3 198022430 + 149474248 149474573 LTR17 781 - 456 781 91316 325 chain 150747 chr3 198022430 + 149474887 149476612 HERV17-int 4347 - 0 1720 24508 562 14 9 1149 chain 176517 chr3 198022430 + 149503067 149505412 L1PA5 6144 - 18 2056 21302 734 320 0 439 0 8 16 0 1 583 0 4 253 chain 162314 chr3 198022430 + 149516060 149517966 L1PA7 6471 + 4510 6456 23021 164 0 4 37 2 9 425 0 5 33 0 1 19 1 0 414 1 0 97 0 3 322 0 1 246 13 34 132 chain 138332 chr3 198022430 + 149520989 149523285 L1PA4 6152 - 1 2573 26429 1398 654 930 244 chain 55842 chr3 198022430 + 149522387 149522991 L1PA4 6152 + 4130 4734 55162 604 chain 4365 chr3 198022430 + 149541742 149541943 L1MC4 1079 + 81 294 202389 41 16 17 12 110 121 22 chain 47198 chr3 198022430 + 149553100 149554027 L1PB1 5432 - 5 805 61047 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 12 19 32 6 2 0 15 1 0 46 3 2 12 2 1 50 20 14 10 5 0 5 0 3 24 61 11 87 0 2 17 105 32 126 0 1 18 4 7 9 3 0 177 chain 22247 chr3 198022430 + 149555208 149555550 THE1B 368 - 0 368 119132 35 0 2 82 41 51 29 1 0 110 0 15 44 chain 121050 chr3 198022430 + 149555555 149557168 THE1B-int 1605 - 6 1605 30678 58 0 1 336 2 3 4 1 0 435 0 9 297 41 26 378 37 28 24 chain 22870 chr3 198022430 + 149583599 149583900 MER41A 554 - 0 303 116229 218 1 0 46 14 17 22 chain 45610 chr3 198022430 + 149583900 149584453 MER41A 554 - 0 554 62390 249 0 1 304 chain 27442 chr3 198022430 + 149587110 149587406 AluYa5 310 + 0 295 94840 123 1 0 172 chain 88122 chr3 198022430 + 149602826 149604154 L1MA2 4263 - 163 1477 40327 24 0 1 4 1 0 13 7 0 93 19 17 91 1 0 6 0 12 6 12 0 25 3 0 10 1 2 52 2 0 9 0 1 72 23 22 52 19 14 169 1 2 147 1 0 4 0 1 178 11 13 184 0 2 88 chain 24005 chr3 198022430 + 149614270 149614556 AluSp 311 - 16 302 110302 286 chain 4186 chr3 198022430 + 149635173 149635220 U6 107 - 44 91 204747 47 chain 57219 chr3 198022430 + 149639099 149639762 L1PA6 6164 - 8 673 54391 449 0 2 214 chain 130654 chr3 198022430 + 149661597 149664376 L1PA5 6144 - 0 2771 27932 13 3 0 100 1 0 34 0 1 156 9 3 414 0 10 126 1 0 614 0 1 21 1128 1120 28 0 2 19 75 72 37 chain 87808 chr3 198022430 + 149663089 149664110 L1PA5 6144 + 367 1385 40417 64 4 1 953 chain 3452 chr3 198022430 + 149709223 149709265 MER5A1 166 - 93 135 216188 42 chain 63780 chr3 198022430 + 149726925 149728003 L1PREC2 3366 + 2051 3075 51108 30 1 0 109 22 18 111 19 17 88 1 0 320 1 0 7 3 1 47 9 8 38 55 43 11 12 7 15 8 6 24 37 20 35 6 4 41 3 1 7 1 0 4 1 0 12 chain 14253 chr3 198022430 + 149739443 149739702 L1P4 1494 + 1152 1410 143705 67 48 45 6 0 4 29 1 2 45 1 0 40 2 0 20 chain 234748 chr3 198022430 + 149743419 149746820 L1PB1 5432 + 2003 5423 17046 209 0 4 120 0 5 106 1 0 4 8 9 28 2 6 250 33 34 47 3 4 57 0 3 31 14 13 6 0 2 43 22 23 253 6 7 25 6 7 213 5 15 56 7 4 141 1 4 230 7 6 191 5 9 142 1 0 189 6 12 115 2 0 186 0 1 201 65 89 11 13 0 24 1 0 6 1 0 14 5 1 9 2 0 51 4 2 16 1 0 44 1 0 10 28 18 17 14 11 9 2 0 24 1 0 21 1 0 13 1 0 10 1 0 9 chain 17729 chr3 198022430 + 149756190 149757118 THE1B 368 + 0 356 133624 82 4 1 24 9 10 60 66 74 19 577 0 36 7 6 44 chain 22538 chr3 198022430 + 149799508 149799750 AluYk12 309 + 17 306 117858 69 0 47 173 chain 80216 chr3 198022430 + 149803329 149804216 L1PA3long 6157 - 989 1876 43498 887 chain 90155 chr3 198022430 + 149804217 149805228 L1PA3long 6157 + 5147 6157 39593 197 2 1 41 0 1 511 1 0 259 chain 5191 chr3 198022430 + 149836547 149836623 MER4E 760 - 0 76 193133 8 2 0 14 1 3 51 chain 6280 chr3 198022430 + 149836647 149836726 MER4D 903 + 825 903 182944 72 1 0 6 chain 81131 chr3 198022430 + 149840562 149841535 L1PA6 6164 - 2 981 43117 144 3 4 72 0 1 120 1 0 229 0 1 121 5 10 107 2 1 169 chain 13633 chr3 198022430 + 149850675 149850953 MER30 238 + 0 238 145841 73 56 2 21 23 34 23 0 6 35 3 0 44 chain 9156 chr3 198022430 + 149887991 149888099 L1PA7 6471 - 249 357 164783 108 chain 5999 chr3 198022430 + 149888099 149888172 L1PA6 6164 + 6091 6162 185248 65 2 0 6 chain 73147 chr3 198022430 + 149892489 149893618 L1PB1 5432 + 4321 5419 46949 118 9 10 89 0 2 80 1 0 6 10 0 10 9 7 258 1 3 178 1 10 11 1 0 14 3 0 20 1 0 10 20 15 5 2 0 53 2 1 16 1 0 44 2 1 14 3 0 7 14 5 19 25 23 20 1 0 21 1 0 13 1 0 15 chain 3657 chr3 198022430 + 149945547 149945592 L1MC5 759 + 380 426 212614 41 0 1 4 chain 4667 chr3 198022430 + 149959567 149959620 U2 167 + 0 53 198888 53 chain 22802 chr3 198022430 + 149988378 149988731 THE1B 368 + 0 368 116568 40 0 15 12 0 1 104 1 0 29 16 17 69 28 27 54 chain 132396 chr3 198022430 + 150000000 150001944 L1MA3 4352 + 2408 4315 27544 46 5 6 32 0 2 6 4 9 6 5 0 63 3 1 67 0 1 76 1 0 138 4 0 167 0 7 90 1 0 7 5 0 255 19 17 161 0 1 193 3 1 5 0 2 96 0 3 127 5 4 56 0 4 19 60 30 6 3 0 119 3 0 27 2 0 24 15 13 20 chain 12206 chr3 198022430 + 150008668 150008815 L1PA16 3655 - 77 224 151397 147 chain 4036 chr3 198022430 + 150022463 150022514 L1MC3 1789 - 1392 1443 206829 51 chain 51908 chr3 198022430 + 150039677 150040375 L1PA16 3655 + 1600 2303 57679 132 5 9 54 1 0 61 1 2 284 2 0 120 1 4 37 chain 84247 chr3 198022430 + 150040572 150041561 LTR12C 1709 + 0 1709 41800 565 2 1 11 2 1 72 0 485 89 0 4 164 0 233 84 chain 29850 chr3 198022430 + 150086239 150086552 AluYb8 318 + 0 313 85278 313 chain 3120 chr3 198022430 + 150099896 150099929 L1ME3A 1206 + 441 474 222549 33 chain 3362 chr3 198022430 + 150184734 150184771 LTR54 533 - 71 108 217807 37 chain 21321 chr3 198022430 + 150188063 150188469 Tigger3b 1229 - 26 453 122797 17 9 11 37 0 66 10 63 0 21 0 1 4 8 13 4 0 1 18 1 11 148 5 4 61 chain 31093 chr3 198022430 + 150191114 150191469 L1PA5 6144 + 5773 6132 82353 180 0 4 175 chain 5992 chr3 198022430 + 150205972 150206041 L1MB1 2102 + 375 444 185311 69 chain 46745 chr3 198022430 + 150210952 150211461 L1HS 6032 - 0 510 61416 14 0 2 6 1 0 488 chain 19003 chr3 198022430 + 150217988 150218238 THE1C-int 1605 - 0 249 130100 29 4 3 217 chain 85748 chr3 198022430 + 150224262 150225266 L1PA7 6471 - 6 1015 41247 6 2 0 297 1 0 361 0 4 107 0 1 69 1 4 160 chain 31798 chr3 198022430 + 150235425 150235776 MER9a2 513 + 0 351 81175 351 chain 22281 chr3 198022430 + 150248603 150248884 AluSc5 308 - 27 308 118994 68 5 6 5 1 0 202 chain 31208 chr3 198022430 + 150319808 150320236 LTR7B 505 + 0 495 82151 90 0 3 15 0 10 66 14 68 26 0 2 85 1 0 76 14 13 41 chain 15246 chr3 198022430 + 150326770 150326975 L1P4 1494 - 1184 1390 140643 165 1 0 20 8 10 11 chain 60620 chr3 198022430 + 150332654 150333321 L1PA3long 6157 - 0 667 52513 667 chain 106555 chr3 198022430 + 150333325 150334484 L1PA3long 6157 + 4334 5493 35104 1159 chain 15651 chr3 198022430 + 150349416 150349682 MER1B 344 + 93 344 139429 33 5 9 82 1 0 26 18 0 32 10 11 39 1 0 19 chain 23122 chr3 198022430 + 150369734 150370100 MSTA 426 + 0 426 115030 103 0 1 29 15 18 47 11 6 13 6 0 6 1 6 24 0 62 111 chain 40332 chr3 198022430 + 150377038 150377568 MLT2A2 560 - 0 540 68831 142 1 12 332 9 8 46 chain 37904 chr3 198022430 + 150406314 150406779 MER4A1 472 + 0 472 72282 17 0 2 228 0 5 220 chain 201131 chr3 198022430 + 150409461 150412015 MER4-int 2692 + 74 2669 19130 25 2 0 8 1 0 330 0 5 144 6 2 129 1 0 41 1 0 81 0 1 78 0 1 175 0 3 154 1 0 226 1 6 29 5 0 32 1 0 174 0 1 60 0 1 81 2 1 156 0 1 6 11 6 240 1 0 285 6 50 35 0 2 26 chain 341887 chr3 198022430 + 150429625 150433970 L1P3 4156 + 0 4139 11837 251 1 0 69 11 10 71 6 0 1369 14 10 39 1 2 24 1 0 72 3 4 210 1 3 25 16 0 195 0 3 40 3 4 228 2 1 256 0 4 26 1 0 1075 0 2 18 128 0 6 57 0 45 7 6 39 2 0 6 1 0 26 chain 39186 chr3 198022430 + 150434389 150434833 L1PA7 6471 + 5775 6220 70478 361 0 1 83 chain 5111 chr3 198022430 + 150470485 150470551 MER53 195 - 118 195 193964 52 0 11 14 chain 4581 chr3 198022430 + 150496028 150496078 MLT2A2 560 - 510 560 199866 50 chain 189435 chr3 198022430 + 150533851 150535947 L1PA4 6152 - 1 2097 20104 259 1 0 596 0 2 665 1 0 574 chain 87731 chr3 198022430 + 150537189 150538149 SVA_E 1901 - 0 1089 40470 796 5 139 39 4 0 110 1 0 5 chain 31427 chr3 198022430 + 150538175 150538585 SVA_F 1814 - 595 1054 81772 4 0 1 27 0 1 224 0 15 17 1 0 48 0 2 25 36 67 13 1 0 8 0 1 6 chain 2549 chr3 198022430 + 150538585 150538626 SVA_F 1814 - 811 852 121390 41 chain 86918 chr3 198022430 + 150538648 150539615 SVA_D 2077 - 869 2017 40817 119 0 181 190 0 1 508 2 1 148 chain 4241 chr3 198022430 + 150541209 150541343 LTR38-int 368 - 117 249 204006 41 71 69 22 chain 26381 chr3 198022430 + 150542016 150542298 AluYa5 310 + 22 303 98490 110 1 0 171 chain 228416 chr3 198022430 + 150553256 150557917 L1PA13 3608 - 120 3522 17393 20 1 0 18 5 0 5 0 1 48 2 0 10 1 0 50 1 0 62 2 0 114 1 0 14 424 86 372 0 2 151 0 5 54 0 1 60 0 1 160 342 8 5 0 2 139 7 10 98 9 7 17 8 12 34 1 9 15 2 0 10 0 2 291 1 0 76 0 6 109 1 4 319 0 5 22 579 0 114 8 1 147 0 2 51 17 11 36 0 5 39 3 6 11 2 0 79 1 0 20 1 0 10 8 6 14 6 4 17 1 0 18 6 2 16 2 0 17 1 0 15 6 5 117 2 0 8 5 8 37 0 2 18 76 66 14 6 0 4 0 3 18 8 6 17 1 0 4 chain 40212 chr3 198022430 + 150572052 150572564 LTR17 781 + 265 781 69014 58 0 4 367 22 0 21 1 23 43 chain 376752 chr3 198022430 + 150574174 150578484 HERV17-int 4347 + 13 4347 10854 14 1 0 50 2 1 35 2 0 25 6 5 133 0 16 365 2 0 284 0 1 1272 0 1 550 0 8 374 1 0 647 0 6 547 chain 29072 chr3 198022430 + 150578798 150579124 LTR17 781 + 0 326 88673 326 chain 12744 chr3 198022430 + 150582265 150582428 THE1B 368 - 204 368 149279 50 5 6 108 chain 9740 chr3 198022430 + 150613126 150613247 L1PBa 3878 - 2498 2619 161892 121 chain 95089 chr3 198022430 + 150652933 150653992 L1PA3long 6157 - 0 1066 38067 964 0 7 95 chain 210522 chr3 198022430 + 150664954 150668191 L1PA14 3548 + 533 3484 18467 323 0 4 212 5 7 96 0 1 148 0 4 113 10 12 128 320 7 214 1 2 80 1 0 96 0 1 324 6 7 223 2 1 52 0 12 33 0 1 43 16 15 141 5 40 41 2 0 24 3 1 8 0 1 5 2 0 48 25 21 92 4 0 17 2 0 5 6 5 78 1 0 111 1 0 12 5 1 36 4 2 12 1 0 3 1 0 19 1 0 40 6 0 10 1 0 19 chain 171081 chr3 198022430 + 150680813 150682844 L1PA7 6471 + 4421 6467 21931 847 0 1 150 0 1 58 4 3 139 7 14 64 0 2 435 0 5 327 chain 37647 chr3 198022430 + 150702435 150702925 MLT2A2 560 + 2 502 72627 178 1 0 213 9 20 89 chain 20001 chr3 198022430 + 150702931 150703187 L1PA6 6164 + 5903 6161 127141 89 1 2 124 0 1 42 chain 23299 chr3 198022430 + 150715516 150715941 L1MB2 1706 + 1294 1691 114203 187 1 0 28 4 5 47 17 10 8 4 0 5 3 0 14 1 0 13 1 0 16 47 35 29 chain 44224 chr3 198022430 + 150724277 150724844 L1PA7 6471 - 1 569 63914 12 1 0 33 36 37 80 0 1 405 chain 12129 chr3 198022430 + 150744151 150744340 MER30 238 - 3 202 151696 45 3 0 61 5 0 7 4 25 50 4 1 10 chain 32326 chr3 198022430 + 150748148 150749183 MLT2A1 477 + 0 477 80314 141 4 5 23 1 5 107 0 1 99 583 24 6 1 0 8 1 0 10 2 0 29 1 0 19 chain 74338 chr3 198022430 + 150756818 150757640 L1PA3long 6157 - 0 822 46341 822 chain 2989 chr3 198022430 + 150760118 150760202 MLT1H2 457 - 8 91 225264 22 38 37 24 chain 49632 chr3 198022430 + 150882237 150882799 L1PA4 6152 + 5592 6151 59292 300 3 0 259 chain 8285 chr3 198022430 + 150905885 150905971 5S 121 + 0 86 169484 86 chain 544314 chr3 198022430 + 150959560 150965560 L1PA2 6032 + 1 6030 2168 73 0 1 82 0 11 89 1 0 453 0 7 231 0 1 2138 1 0 1871 0 1 171 0 1 143 0 6 4 0 1 410 0 1 178 1 2 154 chain 20864 chr3 198022430 + 150986915 150987185 AluSp 311 + 0 279 124412 17 13 22 240 chain 11569 chr3 198022430 + 151002841 151003461 L1PB1 5432 + 5144 5422 154025 12 2 0 3 2 0 9 12 10 40 1 3 16 1 0 44 1 0 6 378 48 11 2 0 27 1 0 19 1 0 11 2 1 14 1 0 4 chain 59627 chr3 198022430 + 151059367 151060028 L1PA3long 6157 - 0 661 53036 661 chain 9953 chr3 198022430 + 151069783 151069997 Tigger4b 360 - 25 243 160822 21 20 19 21 0 2 95 43 46 14 chain 23317 chr3 198022430 + 151104366 151104651 AluSg7 307 - 12 297 114118 15 2 1 147 0 1 121 chain 5488 chr3 198022430 + 151116564 151116704 MER44A 345 - 53 192 190148 13 21 23 14 13 11 47 6 5 26 chain 34858 chr3 198022430 + 151136978 151137419 MLT2A1 477 - 0 477 76398 37 7 43 12 4 0 108 1 0 104 0 4 28 0 1 140 chain 144428 chr3 198022430 + 151137419 151139172 HERVL-int 5654 - 0 1772 25408 223 0 1 18 0 5 48 0 3 33 4 5 119 1 4 297 2 6 531 0 2 477 chain 29788 chr3 198022430 + 151183534 151183960 MER57A1 433 + 0 423 85520 192 0 1 89 0 1 60 46 41 39 chain 26878 chr3 198022430 + 151185391 151185699 AluYf4 310 + 1 310 96708 210 3 4 95 chain 27200 chr3 198022430 + 151192444 151192797 THE1B 368 - 2 368 95599 73 1 0 124 2 1 110 1 16 42 chain 308235 chr3 198022430 + 151203943 151207765 L1PA7 6471 + 2642 6466 13078 247 0 4 206 1 5 88 0 3 14 45 20 251 0 2 21 3 0 12 6 7 26 3 7 679 10 12 235 0 1 181 0 8 284 2 0 662 1 0 183 0 1 38 0 1 46 0 1 178 0 1 400 chain 189515 chr3 198022430 + 151213999 151216159 L1PA4 6152 - 12 2203 20097 211 0 3 33 1 0 69 0 3 32 0 15 466 0 4 675 1 0 277 0 4 282 1 6 24 1 0 87 chain 19790 chr3 198022430 + 151216159 151216386 L1PA4 6152 + 3697 3925 126965 81 0 1 146 chain 20087 chr3 198022430 + 151222642 151222904 THE1C-int 1605 - 1290 1605 126868 107 1 55 138 2 1 14 chain 537812 chr3 198022430 + 151227278 151233414 L1PA4 6152 + 0 6152 3180 216 1 2 654 0 9 35 6 5 76 0 3 805 1 0 459 0 2 517 0 2 398 2 0 30 0 1 475 1 0 148 8 2 82 0 2 112 1 0 755 5 7 196 0 3 897 1 0 249 0 4 6 chain 4799 chr3 198022430 + 151234519 151234573 MER57B1 401 + 347 401 197373 54 chain 218557 chr3 198022430 + 151238326 151241570 L1PA14 3548 + 90 3379 17968 56 1 0 3 3 0 68 1 0 9 10 9 17 1 2 14 2 0 28 9 7 24 4 5 56 1 2 50 8 4 49 27 30 52 1 0 32 1 2 101 0 3 17 7 12 114 9 13 9 1 5 76 10 14 194 0 1 25 2 0 180 0 4 126 0 3 6 7 9 16 0 4 190 1 5 116 0 3 33 1 0 154 0 3 179 6 7 15 0 3 199 0 4 83 3 2 34 1 17 58 0 1 42 1 0 249 2 1 9 1 0 5 9 7 25 1 0 9 15 11 104 2 0 6 5 3 13 2 0 6 1 0 29 0 1 54 1 0 35 9 19 23 12 12 22 16 11 36 chain 493653 chr3 198022430 + 151246194 151252584 L1PA7 6471 + 0 6452 7193 179 26 25 36 16 24 8 0 1 78 0 1 51 8 0 21 2 3 47 1 0 87 3 4 49 0 1 166 0 1 4 28 24 1019 52 48 49 0 1 156 0 6 53 8 1 28 0 1 337 6 32 98 1 2 248 0 4 190 0 1 127 0 1 317 2 1 14 0 4 27 1 4 249 4 0 7 8 9 95 0 4 302 6 6 60 0 3 107 0 1 42 1 2 130 1 10 19 1 0 53 0 2 94 7 10 201 1 0 23 0 1 11 0 3 16 2 6 573 17 14 191 1 4 397 6 5 43 3 5 8 3 2 165 chain 35153 chr3 198022430 + 151260995 151261615 LTR18B 584 - 11 584 75985 24 13 10 120 38 23 9 3 1 71 0 3 3 30 0 47 3 0 25 38 43 6 2 0 188 chain 39461 chr3 198022430 + 151279766 151280315 MER41A 554 + 0 554 70071 110 0 4 57 1 0 74 17 18 56 1 0 5 5 6 100 0 1 123 chain 514760 chr3 198022430 + 151287524 151293646 L1PA6 6164 - 2 6164 5694 8 2 0 260 1 0 606 0 1 477 5 9 254 0 8 68 0 3 527 0 1 670 0 2 299 9 1 70 7 6 260 0 1 305 6 7 361 1 0 80 0 13 781 8 9 79 0 1 345 16 33 107 2 1 312 1 2 195 chain 23025 chr3 198022430 + 151301250 151301515 L1PA5 6144 + 5870 6135 115510 265 chain 28370 chr3 198022430 + 151305433 151305802 THE1B 368 + 0 366 91700 170 6 4 119 1 0 73 chain 3413 chr3 198022430 + 151312499 151312558 L1MA4 2864 + 2747 2804 216879 20 8 6 31 chain 3289 chr3 198022430 + 151327213 151327249 L1PA15-16 3068 - 2116 2152 219213 36 chain 32738 chr3 198022430 + 151330772 151331137 L1PA4 6152 + 4283 4665 79631 196 0 17 169 chain 134310 chr3 198022430 + 151331138 151332619 L1PA4 6152 + 4665 6151 27149 635 0 5 846 chain 25192 chr3 198022430 + 151333737 151334045 AluSp 311 - 1 302 103786 11 4 0 236 3 0 54 chain 21924 chr3 198022430 + 151361535 151361794 AluSg7 307 - 13 273 120529 162 0 1 97 chain 16358 chr3 198022430 + 151366448 151366705 L1PA16 3655 - 86 354 137318 14 4 14 112 2 0 20 1 0 6 14 18 84 chain 11264 chr3 198022430 + 151367718 151368098 MLT2D 439 + 0 372 155178 19 4 6 65 7 5 47 127 124 30 44 45 18 6 0 13 chain 374100 chr3 198022430 + 151383380 151388221 HERV9-int 5642 - 817 5642 10959 9 0 1 83 0 1 30 11 4 552 6 3 7 0 3 52 0 23 71 0 3 229 0 10 1688 42 8 465 0 1 167 112 112 184 0 4 8 7 0 50 71 0 11 5 6 17 0 85 141 2 1 71 15 7 117 0 8 277 5 6 270 44 17 4 0 1 18 chain 61006 chr3 198022430 + 151388249 151389069 LTR12D 1347 - 0 942 52331 104 0 1 4 1 0 134 0 97 232 24 0 64 0 17 43 0 2 59 6 5 17 13 44 119 chain 18225 chr3 198022430 + 151397380 151397626 AluY 311 + 29 269 132270 104 25 19 117 chain 18354 chr3 198022430 + 151416810 151417045 L1PA7 6471 + 6214 6469 131925 182 7 28 32 1 0 13 chain 38095 chr3 198022430 + 151419046 151419569 MER9a3 513 + 0 508 71996 18 0 2 93 0 2 141 1 0 95 29 0 14 0 10 58 1 2 73 chain 363615 chr3 198022430 + 151420231 151424511 HERVK9-int 4720 + 334 4626 11273 2050 0 3 315 2 1 407 0 10 27 0 1 436 1 0 748 0 1 33 1 0 260 chain 21606 chr3 198022430 + 151442993 151443367 THE1D 372 - 0 372 121753 32 1 0 89 62 61 119 4 0 6 8 12 53 chain 132994 chr3 198022430 + 151446536 151448035 L1PA5 6144 - 1 1501 27421 440 5 6 1054 chain 94346 chr3 198022430 + 151448035 151449148 L1P1 4361 + 2157 3281 38225 611 15 27 382 1 0 104 chain 263470 chr3 198022430 + 151454108 151457632 L1PA8 5853 - 0 5802 15510 93 1 0 19 2 1 45 5 4 12 1 0 71 2 0 44 1 0 404 4 2370 302 11 10 31 1 0 191 0 1 169 0 3 63 0 4 151 0 1 157 29 0 13 31 19 247 0 1 11 0 1 271 1 0 358 0 3 481 12 0 194 49 13 13 1 0 10 2 0 21 chain 60175 chr3 198022430 + 151480937 151481684 L1PREC2 3366 - 538 1285 52740 22 1 0 54 2 0 412 0 1 152 0 2 104 chain 11377 chr3 198022430 + 151508596 151508742 THE1D 372 - 0 148 154792 30 4 6 112 chain 74202 chr3 198022430 + 151526407 151527280 MER11D 897 - 0 897 46411 287 1 24 283 0 1 302 chain 5000 chr3 198022430 + 151528134 151528661 HERVFH21-int 991 + 535 866 195143 29 320 161 21 45 33 9 18 0 17 29 24 31 2 0 6 chain 8188 chr3 198022430 + 151539837 151539973 L1MB7 1623 + 1100 1218 170019 87 3 1 9 5 0 5 10 0 7 1 0 9 chain 52306 chr3 198022430 + 151547489 151549546 L1PB1 5432 + 3454 5424 57425 94 11 3 23 9 14 145 7 0 229 0 1 59 1139 1092 24 1 0 8 1 0 8 2 0 6 2 0 8 19 17 28 9 8 16 15 14 28 42 29 18 3 1 19 2 0 24 1 0 23 1 0 11 1 0 10 1 0 10 chain 387345 chr3 198022430 + 151564060 151569339 L1PA8 5853 - 0 5291 10540 93 1 0 19 2 1 45 35 33 51 3 1 46 1 0 78 0 1 236 0 1 4 1 0 4 0 2 61 1 0 90 0 2 78 0 1 100 3 4 93 1 9 430 8 0 14 0 1 8 1 0 428 1 4 9 1 3 115 1 0 38 0 1 175 0 4 251 0 4 32 5 13 175 0 2 170 5 4 7 1 0 30 23 19 67 0 1 39 17 18 249 0 4 82 3 4 189 1 0 179 30 7 114 0 4 67 0 1 595 6 13 85 1 0 299 0 12 8 26 14 37 19 19 90 18 22 8 6 0 17 14 18 39 chain 30721 chr3 198022430 + 151571995 151572392 MLT2A1 477 - 54 446 83000 38 4 0 181 0 1 23 0 1 9 4 1 138 chain 71460 chr3 198022430 + 151583483 151584368 L1PA7 6471 - 6 899 47714 6 3 0 113 2 3 106 0 4 435 0 1 86 2 1 12 0 2 64 0 1 10 1 4 45 chain 176634 chr3 198022430 + 151602676 151605108 L1P3 4156 + 40 2477 21290 5 1 0 152 1 2 16 0 4 30 13 12 59 1 0 283 19 20 214 0 1 75 118 119 526 7 6 285 0 1 43 4 0 139 2 1 210 0 5 54 10 0 149 0 9 8 0 1 8 chain 20319 chr3 198022430 + 151605108 151605354 L1PA7 6471 + 6208 6454 126179 246 chain 126490 chr3 198022430 + 151645760 151647257 LTR12C 1709 + 0 1709 28947 492 1 0 158 0 119 68 1 0 275 9 6 73 1 0 33 0 4 176 0 102 49 1 0 62 7 1 91 chain 12022 chr3 198022430 + 151673785 151674094 L1MB3 1562 - 12 292 152110 27 1 0 34 100 72 34 22 23 9 1 0 81 chain 3721 chr3 198022430 + 151679154 151679197 MADE1 96 - 3 46 211622 43 chain 175238 chr3 198022430 + 151682905 151685508 L1PBa 3878 + 104 2601 21428 26 95 47 36 1 0 24 3 1 136 1 0 152 1 0 75 39 40 121 0 1 23 10 10 24 7 8 72 31 0 6 0 30 48 6 41 8 37 0 581 3 0 10 0 1 726 58 7 243 chain 39580 chr3 198022430 + 151691196 151691717 MER41C 542 - 0 542 69921 201 9 30 162 1 0 99 0 1 49 chain 4969 chr3 198022430 + 151697209 151697268 MLT1B 390 + 105 164 195488 59 chain 107522 chr3 198022430 + 151725101 151726300 L1PA4 6152 - 9 1212 34839 979 0 1 215 0 3 5 chain 9110 chr3 198022430 + 151732837 151732936 L1PA3long 6157 + 6058 6157 165018 99 chain 32799 chr3 198022430 + 151740813 151741190 L1PA7 6471 + 6093 6470 79529 377 chain 23627 chr3 198022430 + 151741205 151741563 L1M1 2793 + 2063 2425 112424 27 1 0 10 5 7 59 0 4 33 11 4 18 1 0 68 7 14 118 chain 199271 chr3 198022430 + 151752870 151755517 MER4-int 2692 - 33 2691 19263 153 0 4 225 0 13 194 0 1 67 1 0 57 30 12 68 0 1 10 0 1 86 0 1 293 0 1 4 1 0 65 0 2 15 6 10 457 0 1 21 17 19 109 1 5 66 0 1 107 18 25 124 8 0 315 6 8 18 4 1 4 1 0 5 0 1 53 2 0 21 1 0 14 chain 205388 chr3 198022430 + 151833495 151835956 L1PA7 6471 - 1 2474 18831 131 0 1 24 1 0 611 2 3 76 0 3 831 0 2 110 0 4 56 0 1 410 0 1 209 chain 12761 chr3 198022430 + 151855036 151855209 L1PB4 2604 + 2400 2572 149205 152 1 0 20 chain 25425 chr3 198022430 + 151865145 151865437 L1PA7 6471 + 6179 6469 102573 280 2 0 10 chain 127608 chr3 198022430 + 151870022 151871581 LTR12C 1709 + 0 1709 28671 376 1 0 102 1 0 95 8 7 187 4 166 176 13 9 100 17 10 105 0 1 289 0 1 85 chain 50480 chr3 198022430 + 151884149 151884716 L1P1 4361 - 2282 2849 58466 567 chain 172454 chr3 198022430 + 151884716 151886641 L1PA4 6152 + 4208 6143 21767 277 0 2 810 0 4 795 0 4 43 chain 18115 chr3 198022430 + 151898173 151898373 L1PA2 6032 + 5831 6031 132551 200 chain 22510 chr3 198022430 + 151911954 151912258 AluY 311 + 0 287 117983 133 41 24 130 chain 112123 chr3 198022430 + 151934910 151936334 LTR12C 1709 + 0 1709 33632 212 6 7 76 0 1 168 0 2 21 6 5 208 0 159 253 9 6 76 0 2 26 13 6 286 1 132 63 chain 9789 chr3 198022430 + 151941366 151941593 L1PA15 4387 - 99 314 161658 17 23 20 23 21 16 27 1 0 46 6 5 4 1 0 21 6 5 31 chain 8485 chr3 198022430 + 151943960 151944064 MLT2B2 565 - 461 565 168383 104 chain 24545 chr3 198022430 + 151948148 151948546 L1MA1 4479 + 3759 4151 107286 62 0 1 4 1 0 12 1 0 7 2 0 14 1 0 47 0 3 38 1 0 4 7 4 69 1 0 5 1 5 37 8 7 29 2 0 35 1 0 9 chain 27823 chr3 198022430 + 151948656 151949023 L1PA7 6471 + 6093 6470 93614 88 0 3 38 9 12 74 7 6 139 1 6 11 chain 13565 chr3 198022430 + 151951745 151951968 Tigger3a 397 - 32 258 146114 12 27 29 136 10 11 38 chain 211263 chr3 198022430 + 151966412 151968705 L1PA3long 6157 - 4 2297 18417 2293 chain 14494 chr3 198022430 + 151968705 151968862 L1PA3long 6157 + 3721 3878 142029 157 chain 27844 chr3 198022430 + 152029701 152030001 AluYa5 310 + 4 302 93546 93 1 0 35 1 0 170 chain 4490 chr3 198022430 + 152072669 152072718 U5 65 + 2 51 200899 49 chain 514951 chr3 198022430 + 152084831 152091559 L1PA7 6471 - 7 6471 5677 5 3 0 51 1 11 323 1 0 445 0 6 130 3 0 48 0 15 435 1 0 39 2 1 124 2 1 158 0 4 369 0 1 213 0 1 82 1 0 500 2 0 5 0 4 113 7 10 100 0 4 162 0 4 251 1 0 46 0 1 4 0 16 9 16 1 116 8 0 24 0 9 468 301 0 126 7 6 526 0 7 431 5 6 551 1 6 53 1 3 28 16 0 10 1 0 219 18 16 4 0 1 162 chain 31434 chr3 198022430 + 152115007 152115387 L1PA7 6471 - 10 390 81757 380 chain 22557 chr3 198022430 + 152119542 152119837 AluY 311 + 10 299 117775 88 5 0 35 24 23 143 chain 476293 chr3 198022430 + 152137513 152144153 L1PA7 6471 + 411 6469 7851 133 2 1 34 12 19 56 0 1 43 8 6 184 9 5 37 4 0 361 0 1 289 0 1 312 0 3 28 333 4 100 0 1 50 0 11 72 0 4 161 18 16 32 0 1 221 11 0 34 8 0 163 0 1 300 0 3 340 1 4 31 0 2 96 0 11 24 1 2 206 2 0 269 0 1 189 1 5 203 0 4 88 1 0 4 0 1 27 0 2 341 7 0 104 0 5 137 0 4 106 0 5 44 8 16 184 0 1 69 1 6 107 300 0 122 0 3 22 0 1 82 9 11 226 1 0 63 13 14 24 24 24 64 7 1 70 2 0 5 chain 21306 chr3 198022430 + 152158068 152158410 THE1B 368 - 0 368 122839 57 1 0 69 55 67 116 0 15 44 chain 7963 chr3 198022430 + 152167071 152167171 HY1 111 + 11 111 171265 100 chain 14773 chr3 198022430 + 152178248 152178413 L1HS 6032 + 5864 6032 142018 150 0 3 15 chain 23360 chr3 198022430 + 152205516 152205840 THE1B 368 + 0 339 113871 44 0 15 103 11 10 9 0 1 18 2 0 100 0 2 37 chain 13372 chr3 198022430 + 152218330 152218623 MSTA 426 + 0 337 146807 110 22 50 10 2 0 33 54 56 32 10 26 20 chain 55855 chr3 198022430 + 152218795 152219586 LTR12D 1347 - 1 909 55210 111 10 0 9 0 10 86 4 5 43 31 0 33 1 0 10 1 100 27 0 1 200 0 17 126 2 33 97 chain 6298 chr3 198022430 + 152219613 152219689 LTR12D 1347 - 817 893 182816 76 chain 108894 chr3 198022430 + 152250276 152251793 L1PA13 3608 - 116 1640 34463 23 2 1 20 2 0 5 7 5 42 9 6 55 1 0 57 4 5 63 12 13 38 1 0 31 1 0 82 1 0 50 3 0 68 0 1 257 0 1 65 0 9 114 15 16 130 1 0 118 0 1 140 8 12 30 0 4 62 chain 329333 chr3 198022430 + 152278183 152282149 HERV9-int 5642 + 0 3960 12226 17 52 0 333 0 47 100 0 5 21 0 8 264 1 0 64 2 1 247 7 3 17 17 19 334 2 0 551 2 1 175 6 0 823 1 0 930 chain 80622 chr3 198022430 + 152311759 152312620 L1HS 6032 - 0 861 43334 861 chain 50169 chr3 198022430 + 152312620 152313157 L1HS 6032 + 4637 5174 58815 537 chain 22734 chr3 198022430 + 152314804 152315213 LTR7 482 + 0 482 116900 39 36 125 16 51 0 44 8 40 43 0 2 53 4 5 115 chain 284016 chr3 198022430 + 152315215 152319277 HERVH-int 3825 + 0 3825 14415 109 0 1 75 0 2 288 4 12 46 5 0 37 1 0 10 1 0 24 28 0 15 1 0 8 7 4 29 1 0 19 0 20 80 1 0 291 13 14 145 23 8 41 0 1 152 389 40 64 69 68 82 4 31 93 102 0 644 0 1 666 8 218 487 chain 7299 chr3 198022430 + 152317372 152317450 HERVH-int 3825 + 1812 1890 175456 78 chain 30935 chr3 198022430 + 152320532 152320942 LTR7 482 + 0 482 82622 69 8 46 109 8 40 43 0 2 173 chain 41017 chr3 198022430 + 152322052 152322684 LTR8 732 - 0 693 67873 121 0 3 31 54 51 17 0 5 67 0 30 59 9 36 150 0 6 14 12 5 98 chain 123014 chr3 198022430 + 152347890 152349735 L1PA11 4918 - 289 2122 30043 18 75 58 14 13 9 10 8 3 9 4 0 20 1 0 10 5 3 71 3 1 9 2 1 59 4 0 3 1 0 512 1 5 27 39 40 115 0 2 87 10 14 308 0 1 98 12 28 137 0 1 160 chain 87892 chr3 198022430 + 152396042 152397281 HSMAR1 1287 + 0 1279 40419 135 0 18 117 0 1 278 7 8 40 26 29 110 2 0 178 20 31 22 0 12 69 5 0 63 26 27 141 chain 275282 chr3 198022430 + 152406583 152410318 L1PBa 3878 + 90 3748 14909 10 1 0 43 54 8 6 3 0 6 1 0 50 1 0 8 14 13 230 2 4 6 2 0 48 1 0 102 1 0 138 3 1 217 6 7 164 0 1 107 0 1 358 5 0 327 0 1 569 0 2 32 0 1 51 7 2 104 0 1 250 0 3 78 19 9 179 3 0 5 9 4 10 0 1 93 1 0 158 1 2 138 1 0 77 2 1 22 2 0 10 chain 14435 chr3 198022430 + 152412684 152413029 L1PB1 5432 + 5107 5422 143090 7 5 0 20 1 0 12 1 0 10 20 14 50 3 1 16 2 1 42 1 0 16 1 0 4 2 0 11 9 0 10 33 35 14 1 0 22 1 0 12 1 0 18 chain 33396 chr3 198022430 + 152415787 152416226 MLT2A1 477 + 0 477 78572 165 7 5 38 0 2 173 0 2 16 3 39 37 chain 125791 chr3 198022430 + 152417894 152419444 THE1A-int 1579 - 12 1579 29160 65 0 5 232 2 14 568 19 20 473 1 0 190 chain 24753 chr3 198022430 + 152419444 152419797 THE1A 353 - 0 353 106153 243 2 1 23 24 25 61 chain 5866 chr3 198022430 + 152427487 152427589 MER53 195 + 0 106 186524 68 18 22 16 chain 6981 chr3 198022430 + 152428214 152428444 L1MC3 1789 + 1116 1317 177597 50 123 96 48 2 0 7 chain 38134 chr3 198022430 + 152431156 152431618 LTR2 463 - 0 463 71940 88 15 16 359 chain 14512 chr3 198022430 + 152441089 152441294 Tigger4b 360 - 21 220 142849 4 0 1 28 1 0 5 10 4 157 chain 3774 chr3 198022430 + 152469880 152469947 MER41A 554 + 399 466 210759 32 10 11 4 1 0 20 chain 3385 chr3 198022430 + 152480437 152480478 L2a 937 + 114 156 217362 7 0 1 34 chain 302169 chr3 198022430 + 152481911 152486203 L1PA8 5853 + 1856 5844 13312 96 2 3 125 1 0 157 306 0 18 1 0 4 0 1 371 0 1 233 0 1 22 2 0 20 3 7 259 3 4 130 12 8 73 17 14 99 0 1 137 0 1 228 0 1 37 0 2 305 0 1 117 1 2 69 8 5 665 0 4 6 3 1 480 1 0 44 2 0 52 33 0 7 0 36 37 23 21 83 chain 29679 chr3 198022430 + 152494499 152494813 AluYb8 318 - 4 318 85905 314 chain 5021 chr3 198022430 + 152502258 152502318 LTR35B 538 + 94 154 194923 60 chain 10843 chr3 198022430 + 152505735 152506023 HERV35I-int 1679 + 1277 1533 156817 41 56 38 37 1 0 45 1 0 22 42 31 17 6 7 12 2 0 6 chain 15458 chr3 198022430 + 152507647 152507850 LTR12_ 688 - 11 451 140029 56 6 243 141 chain 25001 chr3 198022430 + 152507854 152508154 L1PA6 6164 - 2 301 104776 10 1 0 289 chain 28510 chr3 198022430 + 152515055 152515368 AluYa5 310 + 0 310 91148 132 3 0 178 chain 40248 chr3 198022430 + 152522598 152523154 L1PA7 6471 - 10 525 68947 190 0 2 144 1 11 22 59 0 75 0 6 65 chain 21681 chr3 198022430 + 152549997 152550295 AluY 311 + 0 301 121462 19 5 1 76 11 6 66 4 16 117 chain 124750 chr3 198022430 + 152563844 152565425 THE1B-int 1605 + 0 1600 29465 217 1 0 180 7 8 26 0 25 762 22 16 366 chain 24012 chr3 198022430 + 152565810 152566154 L1PA16 3655 - 97 442 110263 238 0 3 6 31 29 69 chain 7422 chr3 198022430 + 152596464 152596641 MSTA 426 + 0 200 174636 56 1 0 6 66 90 48 chain 11616 chr3 198022430 + 152623826 152623949 L1PA2 6032 - 7 130 153826 123 chain 3417 chr3 198022430 + 152631269 152631404 MER3 215 + 75 215 216803 41 79 84 15 chain 23013 chr3 198022430 + 152644688 152645038 THE1C 375 + 26 375 115562 16 4 0 100 7 11 33 10 9 155 1 0 5 4 5 15 chain 23458 chr3 198022430 + 152645777 152646048 AluY 311 + 28 299 113327 95 1 0 9 0 1 166 chain 17664 chr3 198022430 + 152657414 152657611 SVA_D 2077 - 13 229 133791 117 0 19 80 chain 5607 chr3 198022430 + 152679720 152679791 Tigger3a 397 - 175 258 189019 62 0 12 9 chain 109356 chr3 198022430 + 152679904 152681334 THE1A-int 1579 - 134 1573 34355 221 5 6 86 11 15 503 1 2 96 4 3 4 0 1 6 1 0 164 0 2 33 0 1 275 7 8 13 chain 3275 chr3 198022430 + 152682002 152682040 MER21C 908 - 816 854 219460 38 chain 20705 chr3 198022430 + 152690240 152690493 L1PA7 6471 + 6217 6469 124947 241 1 0 11 chain 484331 chr3 198022430 + 152698490 152704190 L1PA5 6144 + 487 6143 7578 466 4 6 212 6 0 746 0 4 311 26 0 618 0 1 1228 0 1 255 0 1 5 0 4 224 0 3 62 0 13 647 1 0 327 53 11 204 1 0 29 1 4 274 chain 3841 chr3 198022430 + 152703635 152703681 L1PA5 6144 - 1378 1425 204909 4 0 1 42 chain 85699 chr3 198022430 + 152709691 152710695 LTR13 1007 + 0 1007 41267 73 2 0 231 1 0 386 9 13 251 0 2 51 chain 5691 chr3 198022430 + 152734032 152734387 LTR54B 464 + 61 464 188197 29 219 268 26 39 38 42 chain 23969 chr3 198022430 + 152766168 152766467 AluSp 311 + 10 311 110515 54 1 3 244 chain 18513 chr3 198022430 + 152806612 152806836 L1PA6 6164 - 4 225 131464 6 3 0 215 chain 26775 chr3 198022430 + 152819201 152819503 AluYf5 307 + 0 302 97067 302 chain 12814 chr3 198022430 + 152828758 152828947 Tigger2 2703 + 2474 2658 149002 136 5 0 16 1 2 5 1 0 25 chain 48543 chr3 198022430 + 152831650 152832175 L1PA3long 6157 - 409 934 60077 525 chain 37969 chr3 198022430 + 152832176 152832593 L1PA3long 6157 + 5741 6157 72176 87 1 0 329 chain 67265 chr3 198022430 + 152839888 152842005 L1P4 1494 - 84 1222 49537 20 2 0 34 0 22 97 1 5 114 21 0 214 0 1 82 9 12 25 0 1 228 1 2 11 54 21 50 1076 118 16 1 4 61 chain 57937 chr3 198022430 + 152845949 152846855 L1PB1 5432 - 5 877 54012 4 1 0 11 1 0 8 1 0 13 1 0 21 1 0 24 17 14 5 2 0 19 25 13 15 2 1 36 7 6 18 1 0 51 2 0 10 6 2 10 5 4 4 1 0 24 1 0 11 10 5 145 1 0 138 0 8 127 0 1 53 3 0 71 chain 18638 chr3 198022430 + 152866469 152866829 THE1B 368 - 0 368 131111 56 7 6 64 80 86 16 8 9 14 1 3 114 chain 113798 chr3 198022430 + 152872692 152874073 LTR12C 1709 - 0 1709 33149 77 6 5 69 1 0 107 0 18 205 0 4 106 4 2 4 1 0 47 0 3 26 1 2 26 0 278 309 0 22 111 0 6 19 0 1 262 chain 21232 chr3 198022430 + 152917468 152917785 7SLRNA 320 - 1 301 123095 33 10 11 122 0 3 80 31 10 41 chain 24697 chr3 198022430 + 152942932 152943239 AluY 311 + 0 302 106450 126 11 6 170 chain 29023 chr3 198022430 + 152943938 152944351 LTR7 482 - 0 482 88887 49 12 14 127 0 31 36 0 1 109 26 61 54 chain 298591 chr3 198022430 + 152946167 152949897 HERVH-int 3825 - 0 3825 13497 487 8 218 1463 0 4 223 9 0 31 0 1 174 7 0 6 8 0 104 0 5 25 16 17 81 0 1 206 1 0 77 1 0 46 23 1 24 24 0 13 2 1 13 114 0 16 1 58 148 0 4 45 1 0 333 chain 29041 chr3 198022430 + 152949899 152950312 LTR7 482 - 0 482 88800 49 12 14 127 0 31 36 0 1 109 26 61 54 chain 516909 chr3 198022430 + 152953958 152959571 L1PA2 6032 - 413 6027 5494 2486 0 1 3127 chain 5810 chr3 198022430 + 152974594 152974748 MER58B 340 - 24 195 187048 25 3 0 6 59 79 61 chain 4166 chr3 198022430 + 152999666 152999711 LTR12D 1347 + 706 751 205023 45 chain 19487 chr3 198022430 + 153010536 153010767 AluY 311 + 40 272 128695 92 0 1 139 chain 109485 chr3 198022430 + 153042193 153044116 L1PA15 4387 - 31 1675 34321 27 5 0 11 4 2 46 20 17 36 17 12 20 1 0 54 1 0 27 5 4 106 0 2 59 1 0 30 15 13 24 0 2 23 5 52 612 12 11 299 316 13 57 33 28 57 chain 8752 chr3 198022430 + 153057500 153057628 MER5A 189 + 35 161 166907 56 13 11 59 chain 41852 chr3 198022430 + 153057995 153058506 MER9a3 513 + 0 513 66824 19 0 1 90 0 1 147 1 0 176 4 5 74 chain 80036 chr3 198022430 + 153062778 153063659 L1PA3long 6157 - 0 885 43574 849 0 4 32 chain 30420 chr3 198022430 + 153063659 153063986 L1PA3long 6157 + 4933 5260 83400 327 chain 120875 chr3 198022430 + 153064312 153065734 L1PA6 6164 - 4 1423 30736 345 7 4 1070 chain 9568 chr3 198022430 + 153065745 153065865 L1PA7 6471 - 16 136 162745 120 chain 9839 chr3 198022430 + 153065865 153066011 L1PA7 6471 + 6205 6351 161398 115 2 8 8 6 0 15 chain 129423 chr3 198022430 + 153095144 153096690 LTR12C 1709 - 0 1709 28218 332 0 2 110 0 2 35 0 4 107 3 1 5 1 0 115 0 159 523 1 0 4 0 1 201 5 4 104 chain 25748 chr3 198022430 + 153096931 153097237 AluY 311 + 0 300 101093 127 6 0 173 chain 21668 chr3 198022430 + 153132245 153132501 AluY 311 + 36 293 121507 96 0 1 160 chain 68492 chr3 198022430 + 153145526 153146553 L1PA8 5853 - 0 1033 49042 92 2 1 19 2 1 11 1 0 37 1 0 11 18 17 52 10 8 40 2 0 40 0 3 27 0 3 5 2 0 144 31 0 115 11 7 136 0 2 23 0 24 17 7 9 155 1 19 15 chain 37837 chr3 198022430 + 153164806 153165248 L1PA5 6144 + 5700 6144 72355 295 6 5 38 0 3 103 chain 6354 chr3 198022430 + 153166928 153166998 L1PA3long 6157 - 5 75 182352 70 chain 24481 chr3 198022430 + 153179831 153180134 AluY 311 + 0 286 107650 69 17 0 217 chain 28402 chr3 198022430 + 153181128 153181504 L1PA8 5853 + 5484 5853 91570 80 1 0 44 2 0 74 1 0 10 1 0 48 2 1 19 2 1 92 chain 21070 chr3 198022430 + 153183959 153184243 AluSc 308 - 13 299 123659 20 0 2 120 5 4 92 17 18 30 chain 36882 chr3 198022430 + 153189826 153190666 L1PB1 5432 - 22 648 73680 8 1 0 10 1 0 22 1 0 24 2 0 5 7 0 9 8 5 18 0 2 10 15 3 14 1 0 43 1 0 16 2 1 53 2 0 9 26 20 22 3 0 8 199 5 50 21 39 201 0 1 28 chain 62520 chr3 198022430 + 153190674 153191466 HERVL-int 5654 + 4840 5654 51669 249 7 9 208 2 0 5 5 20 97 0 3 172 1 5 46 chain 18382 chr3 198022430 + 153196090 153196308 Tigger3b 1229 - 667 885 131835 218 chain 23618 chr3 198022430 + 153204823 153205119 AluY 311 + 4 306 112480 48 2 1 80 4 11 162 chain 15734 chr3 198022430 + 153212483 153212751 L1PA8 5853 + 5587 5853 139160 20 27 5 10 1 4 6 0 19 27 2 1 15 0 1 49 1 0 16 2 1 92 chain 12060 chr3 198022430 + 153223227 153223359 L1PA6 6164 - 5 137 151946 132 chain 548206 chr3 198022430 + 153224192 153230194 L1PA2 6032 + 0 6029 1679 2794 0 1 69 0 1 306 0 1 186 0 1 603 0 1 263 0 4 632 0 1 1074 0 17 75 chain 135516 chr3 198022430 + 153236968 153238456 L1PA3long 6157 - 2262 3750 26881 1488 chain 204143 chr3 198022430 + 153238456 153240716 L1PA3long 6157 + 3896 6157 18915 1499 0 1 761 chain 29367 chr3 198022430 + 153240727 153241092 THE1A-int 1579 - 1204 1579 87217 259 0 10 106 chain 59856 chr3 198022430 + 153262089 153262757 L1PA4 6152 - 0 668 52896 668 chain 25538 chr3 198022430 + 153266759 153267033 L1PA2 6032 - 0 274 102063 274 chain 3504 chr3 198022430 + 153283526 153283566 MSTA 426 + 386 426 215290 40 chain 36596 chr3 198022430 + 153286671 153287109 L1PA7 6471 - 1985 2423 74103 438 chain 153513 chr3 198022430 + 153287140 153289061 L1PA7 6471 + 4514 6461 24155 9 1 0 48 11 0 7 0 1 225 0 2 414 1 2 4 1 0 172 5 19 204 1 0 89 3 0 280 0 3 309 21 43 116 chain 424861 chr3 198022430 + 153301783 153306652 L1PA4 6152 + 10 6152 9423 807 19 19 862 0 1 1253 0 2 47 0 1 209 0 3 516 0 1255 898 0 1 195 0 10 63 chain 45299 chr3 198022430 + 153313748 153314267 L1PA7 6471 - 10 537 62721 463 0 1 13 0 7 43 chain 300697 chr3 198022430 + 153358030 153362120 L1PBa1 4058 + 10 4040 13386 26 1 0 11 16 13 97 8 9 59 2 0 7 1 3 167 4 0 29 3 1 53 1 2 79 1 0 57 9 8 14 0 7 373 0 1 274 0 14 7 24 0 125 11 10 67 1 0 14 0 1 129 4 3 396 3 8 188 2 0 144 0 1 51 11 0 61 1 0 46 3 0 55 5 6 149 0 4 14 1 0 640 3 2 113 12 1 39 0 2 75 17 15 21 1 0 41 2 0 108 3 1 15 1 0 14 2 0 3 5 0 11 2 0 20 2 1 4 1 0 4 3 0 21 1 0 9 34 28 17 1 0 10 0 1 31 chain 15257 chr3 198022430 + 153364592 153364878 L1PB1 5432 + 5158 5418 140611 11 2 0 51 2 1 16 1 0 44 1 0 15 2 0 6 16 6 19 9 5 16 2 0 24 1 0 19 1 0 13 1 0 14 chain 76198 chr3 198022430 + 153368348 153369546 L1PB1 5432 + 4274 5427 45362 74 1 2 279 7 1 77 0 1 177 1 0 74 7 6 122 35 29 22 1 0 9 1 0 11 18 12 50 2 1 10 9 8 41 1 0 16 24 12 19 2 0 5 6 5 9 2 0 24 1 0 12 10 9 13 1 0 18 2 0 5 chain 77886 chr3 198022430 + 153371827 153372731 L1PA4 6152 - 9 917 44571 695 0 1 141 0 3 68 chain 9934 chr3 198022430 + 153372731 153372840 L1PA4 6152 + 3062 3171 160910 109 chain 45137 chr3 198022430 + 153372842 153373345 L1PA4 6152 + 3172 3680 62883 203 0 4 136 0 1 164 chain 137989 chr3 198022430 + 153373350 153374894 L1PA4 6152 + 3683 5232 26482 131 0 1 46 0 2 681 0 3 487 1 0 198 chain 25166 chr3 198022430 + 153380024 153380405 L1MA2 4263 - 158 520 103932 36 2 0 11 8 1 31 7 8 211 3 0 9 10 2 53 chain 24066 chr3 198022430 + 153380427 153380727 AluSp 311 + 6 311 109948 42 4 9 254 chain 22753 chr3 198022430 + 153381626 153381912 AluY 311 + 11 292 116813 98 1 0 10 3 0 14 2 0 33 0 1 125 chain 8292 chr3 198022430 + 153387254 153387376 L1MA3 4352 + 3900 4241 169449 11 0 215 47 0 5 32 1 0 31 chain 2885 chr3 198022430 + 153403456 153403491 MER20B 722 + 519 554 227273 35 chain 22584 chr3 198022430 + 153415139 153415411 AluSp 311 - 29 301 117660 272 chain 32060 chr3 198022430 + 153426951 153427399 L1PB 1623 + 1035 1469 80752 266 25 9 88 0 4 48 6 4 15 chain 8569 chr3 198022430 + 153454507 153454639 L1P3b 214 + 0 128 167913 23 16 11 13 0 1 80 chain 135261 chr3 198022430 + 153454664 153456337 L1PA8A 6298 + 4574 6283 26963 123 0 14 198 2 6 68 1 0 225 4 3 4 0 1 136 0 1 140 0 7 70 1 4 251 4 5 223 1 0 124 1 9 97 chain 3643 chr3 198022430 + 153483285 153483332 LTR33 499 - 343 391 212918 14 0 1 33 chain 32702 chr3 198022430 + 153484129 153484515 L1PA4 6152 + 5765 6152 79680 13 0 1 373 chain 24029 chr3 198022430 + 153493218 153493510 AluY 311 + 2 287 110167 17 17 10 258 chain 89041 chr3 198022430 + 153511978 153512970 L1PA5 6144 + 5134 6128 39985 453 0 2 539 chain 556656 chr3 198022430 + 153514593 153520745 L1PA3long 6157 + 5 6157 653 987 0 6 1017 3 2 3524 5 0 616 chain 41181 chr3 198022430 + 153540549 153541077 MLT2A2 560 - 4 541 67668 35 0 5 103 2 13 184 7 0 197 chain 186496 chr3 198022430 + 153541143 153543335 L1P1 4361 + 4 2251 20380 201 1 0 25 0 1 5 2 1 841 0 1 406 1 0 257 0 55 205 1 2 247 chain 3188 chr3 198022430 + 153545941 153545982 HERVH-int 3825 - 3310 3350 221184 30 1 0 10 chain 28445 chr3 198022430 + 153546776 153547230 LTR7B 505 - 9 505 91393 42 14 13 52 0 1 26 1 0 52 0 88 27 67 12 68 0 10 105 chain 29140 chr3 198022430 + 153549623 153549936 AluYb8 318 + 0 309 88361 118 4 0 191 chain 171864 chr3 198022430 + 153585368 153587750 L1PA7 6471 - 12 2085 21832 149 0 2 89 312 0 600 3 0 110 1 4 304 1 2 250 1 0 74 0 1 43 1 2 204 1 0 239 chain 78987 chr3 198022430 + 153592033 153593112 MER11A 1151 - 0 1146 44067 135 0 3 29 0 1 13 1 0 33 1 2 14 0 1 21 31 13 24 42 25 147 5 6 145 0 1 94 0 1 149 4 0 66 1 0 52 0 99 72 chain 35148 chr3 198022430 + 153621618 153622015 L1PA5 6144 - 0 397 75996 397 chain 327507 chr3 198022430 + 153631921 153636547 L1PA11 4918 + 160 4473 12293 20 1 0 33 2 0 3 1 0 78 0 4 164 7 6 29 4 5 31 0 1 7 263 13 400 1 0 15 1 7 368 1 3 61 0 1 54 0 3 194 13 0 155 3 0 200 2 0 73 0 5 94 6 10 19 0 4 13 0 1 4 0 3 47 3 19 79 1 4 157 1 0 42 0 4 122 10 7 36 1 0 243 0 1 106 2 1 37 0 2 183 1 0 99 0 3 89 0 4 14 0 1 441 0 1 247 99 7 83 15 8 60 7 6 13 2 0 66 chain 8854 chr3 198022430 + 153641330 153641452 LTR12_ 688 - 0 133 166359 65 6 16 40 0 1 11 chain 54859 chr3 198022430 + 153641467 153642243 LTR12 884 - 15 884 55792 401 0 1 89 2 0 13 0 157 47 25 0 17 22 6 15 22 0 123 chain 23456 chr3 198022430 + 153642243 153642522 AluY 311 + 30 311 113340 92 0 1 9 0 1 178 chain 202231 chr3 198022430 + 153648061 153650375 L1PA4 6152 - 1835 4163 19053 156 0 8 261 0 2 111 0 1 262 0 1 147 0 1 202 0 1 161 0 2 340 3 1 671 chain 161920 chr3 198022430 + 153650375 153652196 L1PA4 6152 + 4317 6143 23062 966 0 4 714 0 1 141 chain 96812 chr3 198022430 + 153667565 153668668 L1P2 5180 + 2010 3109 37606 317 4 0 782 chain 32469 chr3 198022430 + 153681767 153682125 L1PA4 6152 - 1722 2080 79928 358 chain 151338 chr3 198022430 + 153682125 153683827 L1PA4 6152 + 4438 6140 24423 863 1 0 678 8 9 152 chain 74208 chr3 198022430 + 153698478 153701180 L1PB1 5432 + 80 2807 10748 76 1 0 251 3 0 116 32 31 158 3 17 360 0 1 8 0 1 38 1 0 7 1 0 15 1 2 14 2 1 71 0 4 144 1 0 4 11 0 202 0 5 250 0 3 298 0 1 171 0 1 66 0 1 98 9 8 9 0 1 149 0 13 132 chain 537984 chr3 198022430 + 153701191 153707316 L1PA5 6144 - 2 6138 3151 2656 0 1 309 2 3 113 0 1 66 0 7 218 0 1 1894 1 0 174 1 2 691 chain 137540 chr3 198022430 + 153707316 153712324 L1PB1 5432 + 2808 5417 10748 34 3 1 399 1 2 472 35 32 62 0 3 187 4 0 51 1 0 21 0 1 109 0 1 4 1 0 441 2 0 65 2287 0 119 5 3 46 0 2 129 5 6 5 1 0 34 9 10 5 1 0 47 76 6 9 3 0 14 7 6 13 16 11 11 3 1 50 2 1 11 6 5 44 1 0 14 1 0 5 2 0 13 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 80787 chr3 198022430 + 153715421 153716317 L1PA3long 6157 - 2244 3140 43278 896 chain 204935 chr3 198022430 + 153716318 153718560 L1PA3long 6157 + 3915 6157 18863 2242 chain 51549 chr3 198022430 + 153742221 153742833 L1PA7 6471 - 9 628 57928 4 1 0 159 1 2 56 0 1 35 0 6 61 0 1 4 1 0 290 chain 39947 chr3 198022430 + 153780204 153780834 LTR9B 643 + 0 643 69398 67 3 6 30 0 8 76 18 21 13 0 1 111 0 1 77 54 51 117 26 25 5 0 1 33 chain 85421 chr3 198022430 + 153785136 153786158 MER11C 1089 + 0 1024 41374 464 1 0 127 1 2 148 2 3 138 0 1 141 chain 12036 chr3 198022430 + 153786159 153786336 HSMAR1 1287 - 1078 1287 152052 83 17 49 77 chain 75349 chr3 198022430 + 153786485 153787327 L1PA4 6152 + 5297 6141 45846 618 0 1 218 0 1 6 chain 41035 chr3 198022430 + 153799809 153800301 MER9a3 513 - 0 493 67851 77 0 1 179 1 0 145 0 1 90 chain 118159 chr3 198022430 + 153805643 153807313 LTR12C 1709 + 0 1709 31745 269 1 26 43 0 43 30 0 1 6 4 3 42 10 8 265 82 0 101 1 41 193 0 47 90 27 20 10 30 6 377 5 4 84 chain 5119 chr3 198022430 + 153806313 153806395 LTR12C 1709 + 814 895 119793 23 1 0 58 chain 2939 chr3 198022430 + 153807456 153807491 MER102a 319 - 175 210 226351 35 chain 4281 chr3 198022430 + 153812700 153812830 L1MC4 1079 + 575 707 203463 23 70 72 37 chain 24819 chr3 198022430 + 153834807 153835176 THE1D 372 - 0 372 105775 32 1 0 147 25 27 92 3 13 54 8 0 7 chain 27286 chr3 198022430 + 153915895 153916286 L1PB2 3958 + 3434 3821 95322 5 2 0 12 2 0 21 8 13 132 1 0 64 2 1 71 2 0 21 5 4 43 chain 71930 chr3 198022430 + 153917670 153918769 L1MA1 4479 - 294 1323 47512 13 6 0 14 4 1 6 1 0 9 1 0 35 8 6 14 12 10 125 3 0 5 1 0 88 1 0 14 2 0 16 1 0 74 1 0 16 3 1 24 1 0 200 1 2 76 36 0 48 3 0 125 4 0 12 1 0 95 chain 214013 chr3 198022430 + 153918800 153921203 L1PA4 6152 - 9 2418 18225 58 2 0 1331 0 3 399 0 4 451 0 1 162 chain 56110 chr3 198022430 + 153926136 153927372 L1M1 2793 - 1241 2132 55063 162 0 1 26 1 2 84 3 0 6 6 0 6 6 8 6 4 0 73 1 0 32 314 0 5 1 2 100 0 1 29 0 2 5 3 0 97 14 12 54 1 0 8 2 0 23 7 6 30 2 0 6 3 1 21 2 0 4 2 0 9 37 29 41 chain 91851 chr3 198022430 + 153934324 153935317 L1PA2 6032 - 2 995 39009 993 chain 3750 chr3 198022430 + 153938769 153938817 MLT1C 463 + 246 293 211136 35 1 0 12 chain 500788 chr3 198022430 + 153980394 153986510 L1PA5 6144 + 1 6144 6796 57 0 3 59 0 14 261 12 23 9 10 0 391 0 17 83 0 4 20 35 10 69 0 2 142 13 4 64 1 2 191 0 1 125 0 2 65 9 10 80 12 8 27 0 1 171 0 1 21 0 1 4 0 1 369 2 1 836 0 4 16 1 0 195 0 4 140 1 0 199 3 5 144 0 1 25 0 2 608 1 0 135 1 0 198 1 3 4 1 0 550 2 1 742 0 7 11 chain 29262 chr3 198022430 + 154008641 154008950 AluYa5 310 + 0 308 87728 132 1 0 176 chain 7716 chr3 198022430 + 154047503 154047596 U13 108 + 0 93 172821 93 chain 23375 chr3 198022430 + 154064984 154065360 THE1C 375 - 0 375 113787 26 1 0 99 44 47 57 4 0 7 5 9 5 3 0 125 chain 175289 chr3 198022430 + 154074103 154076078 L1PA3long 6157 + 4128 6146 21421 1199 3 46 773 chain 21643 chr3 198022430 + 154079853 154080098 AluY 311 + 57 303 121600 75 0 1 170 chain 47460 chr3 198022430 + 154084892 154085503 LTR30 714 + 0 630 60861 238 0 2 9 0 5 146 0 1 42 7 18 169 chain 36330 chr3 198022430 + 154086224 154087216 HERV30-int 1034 + 137 786 74464 10 24 0 13 6 0 35 6 5 61 33 0 45 14 9 39 12 0 34 0 1 43 1 0 89 20 5 36 34 0 19 37 32 12 178 61 49 39 0 24 52 0 27 chain 30999 chr3 198022430 + 154089931 154090321 LTR30 714 + 0 398 82514 166 0 1 68 1 0 6 5 13 144 chain 5685 chr3 198022430 + 154096460 154096736 L1ME1 1623 - 395 683 188245 20 55 64 48 118 122 4 1 0 30 chain 79424 chr3 198022430 + 154135742 154136614 L1PA3long 6157 + 5285 6157 43862 872 chain 10780 chr3 198022430 + 154141655 154141774 L1PA5 6144 - 16 136 157075 115 0 1 4 chain 532023 chr3 198022430 + 154151376 154157509 L1PA4 6152 - 0 6151 3957 6 0 5 708 19 17 98 0 3 1000 0 1 176 0 1 638 0 1 321 1 0 5 2 1 577 5 4 270 0 1 478 1 0 195 0 12 573 2 1 5 0 1 1053 chain 18685 chr3 198022430 + 154192254 154192516 THE1B 368 + 0 306 130981 64 0 3 102 1 0 14 14 56 67 chain 54920 chr3 198022430 + 154198234 154198831 L1PA3long 6157 + 5555 6152 55756 597 chain 449481 chr3 198022430 + 154204896 154210680 L1PA8 5853 + 50 5853 8781 22 2 0 10 1 0 13 54 13 194 19 7 175 0 1 76 1 0 177 0 2 404 0 1 137 0 3 99 3 4 230 0 1 5 8 7 251 9 10 105 0 8 13 4 0 34 13 28 10 0 3 243 0 4 141 0 4 41 0 1 170 0 2 129 0 1 247 0 1 144 17 7 159 0 1 198 0 1 8 0 2 48 0 1 397 0 3 294 2 0 22 1 0 49 0 1 326 0 1 133 1 2 108 3 21 6 2 0 73 1 3 137 0 23 317 1 0 45 7 5 67 1 0 11 1 0 50 2 1 19 3 2 91 chain 11322 chr3 198022430 + 154216125 154216281 MER107 203 - 17 185 154993 18 0 1 5 4 14 26 0 1 103 chain 45274 chr3 198022430 + 154221580 154222115 L1PA7 6471 + 5930 6465 62742 380 2 0 140 0 2 13 chain 29369 chr3 198022430 + 154229917 154230229 AluYa5 310 + 0 310 87204 123 2 0 187 chain 35697 chr3 198022430 + 154252410 154252809 L1PA4 6152 - 12 411 75272 399 chain 7979 chr3 198022430 + 154286815 154286902 L1PA8 5853 + 5251 5338 171174 87 chain 30716 chr3 198022430 + 154286903 154287287 L1PA8 5853 + 5338 5716 83009 226 1 0 45 2 0 68 4 2 21 1 0 16 chain 5585 chr3 198022430 + 154287319 154287398 L1PA8 5853 + 5767 5847 189224 13 6 7 60 chain 266858 chr3 198022430 + 154311891 154314854 L1PA3long 6157 - 0 2986 15343 568 0 12 263 0 4 383 0 1 48 0 1 53 0 5 1648 chain 489814 chr3 198022430 + 154337168 154342840 L1PA5 6144 + 3 6135 7376 110 0 1 511 11 22 180 18 1 105 0 1 229 1 0 1692 0 2 652 5 4 168 0 1 806 0 461 344 0 2 82 1 0 453 4 5 300 chain 14040 chr3 198022430 + 154348544 154348711 L1PA3long 6157 - 0 165 144422 15 3 1 149 chain 235426 chr3 198022430 + 154365326 154368156 L1PA7 6471 + 3667 6459 17001 162 1 0 221 26 1 79 0 1 197 17 16 196 22 0 729 0 6 339 0 3 87 1 2 753 chain 13380 chr3 198022430 + 154383429 154383781 THE1B 368 + 0 368 146785 46 1 7 10 156 167 10 1 0 128 chain 24576 chr3 198022430 + 154389551 154389853 AluSp 311 - 8 311 107100 139 0 1 60 2 1 33 0 1 68 chain 6096 chr3 198022430 + 154391817 154391889 L1PA8 5853 + 5449 5521 184447 72 chain 3597 chr3 198022430 + 154391889 154391929 L1PA8 5853 + 5524 5564 213699 40 chain 19365 chr3 198022430 + 154391930 154392239 L1PA8 5853 + 5564 5853 129037 45 2 0 69 12 10 52 2 1 22 1 0 15 23 9 66 chain 85765 chr3 198022430 + 154399564 154401222 L1PB1 5432 - 5 1314 41239 5 3 0 30 1 0 22 1 0 21 20 17 5 2 0 16 31 20 11 1 0 44 6 5 10 2 1 48 6 4 8 4 0 16 3 2 4 1 0 24 30 22 186 4 5 101 2 0 92 5 7 8 313 0 71 0 1 21 2 4 478 chain 20887 chr3 198022430 + 154453467 154453742 L1PA7 6471 - 12 289 124330 88 8 10 179 chain 2760 chr3 198022430 + 154455479 154455515 L1PA8 5853 + 5640 5678 229324 17 0 2 19 chain 2820 chr3 198022430 + 154455530 154455582 L1PA8 5853 + 5687 5735 228458 14 12 8 26 chain 9405 chr3 198022430 + 154455582 154455701 L1PA8 5853 + 5736 5853 163533 8 1 0 16 1 0 93 chain 97495 chr3 198022430 + 154457086 154458604 L1PB 1623 - 40 1511 37426 8 2 0 22 42 23 5 3 0 12 1 0 11 5 1 14 47 41 96 0 1 41 0 2 200 4 3 26 14 0 370 0 1 140 1 0 82 1 0 13 0 3 57 25 22 120 1 0 19 12 11 47 2 9 11 11 8 47 1 0 5 chain 3293 chr3 198022430 + 154464031 154464066 MER46C 351 - 32 67 219128 35 chain 26875 chr3 198022430 + 154487655 154488106 L1PA14 3548 - 107 530 96722 26 1 0 17 1 0 11 1 0 10 4 2 33 14 9 39 1 0 7 0 1 65 1 0 84 9 6 16 2 0 5 2 0 81 10 0 11 chain 26867 chr3 198022430 + 154521698 154522067 THE1B 368 - 0 368 96754 194 3 2 90 1 0 6 20 12 8 0 9 47 chain 121167 chr3 198022430 + 154522074 154523672 THE1B-int 1605 - 7 1605 30646 40 0 1 305 1 2 287 1 0 6 26 19 346 0 3 5 22 0 128 4 29 427 chain 2961 chr3 198022430 + 154527889 154527925 L1PA8 5853 + 5572 5607 225864 28 1 0 7 chain 8499 chr3 198022430 + 154527931 154528062 L1PA8 5853 + 5611 5740 168296 66 1 0 10 18 17 36 chain 9177 chr3 198022430 + 154528064 154528177 L1PA8 5853 + 5741 5853 164668 19 1 0 93 chain 517735 chr3 198022430 + 154537798 154543879 L1PA5 6144 - 13 6144 5397 553 1 2 187 0 3 1042 4 14 96 0 1 301 0 1 188 0 1 258 0 4 608 0 12 463 1 0 967 1 0 195 1 0 65 9 0 91 1 4 907 6 32 136 chain 3931 chr3 198022430 + 154552440 154552494 MER4D 903 - 16 70 208395 15 1 0 25 0 1 13 chain 38499 chr3 198022430 + 154552594 154553054 LTR2 463 - 0 463 71437 331 0 3 129 chain 21557 chr3 198022430 + 154558012 154558288 AluSg7 307 - 32 307 121937 132 12 11 132 chain 111880 chr3 198022430 + 154570968 154572280 L1PA5 6144 - 3 1318 33562 6 4 0 435 0 3 396 0 4 471 chain 202264 chr3 198022430 + 154572280 154574547 L1PA5 6144 + 2554 4822 19045 114 0 1 2153 chain 42865 chr3 198022430 + 154577392 154578116 L1MA1 4479 - 331 1013 65578 6 1 0 37 2 0 28 4 3 15 9 13 94 11 7 86 1 0 21 2 1 11 1 0 24 0 1 46 1 0 16 2 0 18 7 6 188 10 7 17 29 0 37 chain 15665 chr3 198022430 + 154591481 154591745 MER1B 344 + 41 304 139379 43 18 19 114 4 0 44 1 0 4 17 20 19 chain 469120 chr3 198022430 + 154592853 154598937 L1PA7 6471 + 211 6469 8068 118 41 211 71 3 4 93 17 27 184 33 36 204 0 2 141 58 59 121 0 1 275 5 6 841 6 7 28 0 1 103 0 3 126 9 15 166 0 1 97 0 2 222 0 1 60 6 0 60 3 0 56 1 13 269 0 1 166 1 0 239 47 19 227 0 1 176 0 4 321 6 7 361 2 1 263 5 0 141 3 1 696 3 0 10 chain 10563 chr3 198022430 + 154606612 154606838 LTR12C 1709 - 878 1064 157983 58 36 36 34 41 0 53 0 1 4 chain 1118 chr3 198022430 + 154606855 154606889 LTR12C 1709 - 642 676 191078 34 chain 29558 chr3 198022430 + 154612652 154613002 L1PA7 6471 + 4199 4563 86382 109 0 14 241 chain 28888 chr3 198022430 + 154613010 154613358 L1PA7 6471 + 4572 4925 89498 102 0 4 123 0 1 123 chain 60116 chr3 198022430 + 154613358 154614069 L1PA7 6471 + 4948 5661 52763 343 0 2 368 chain 67504 chr3 198022430 + 154614069 154614857 L1PA7 6471 + 5675 6467 49446 600 1 5 187 chain 41596 chr3 198022430 + 154620446 154620982 L1PA7 6471 - 609 1153 67158 57 0 1 121 11 5 54 1 2 96 14 26 182 chain 23270 chr3 198022430 + 154620982 154621263 L1PA7 6471 + 5872 6153 114341 281 chain 24519 chr3 198022430 + 154621263 154621585 L1PA7 6471 + 6154 6456 107444 151 5 3 43 18 0 105 chain 345803 chr3 198022430 + 154628884 154632590 L1HS 6032 + 2087 6029 11735 2896 3 239 807 chain 15677 chr3 198022430 + 154632778 154633063 L1MA3 4352 + 3999 4247 139342 23 2 0 71 58 27 115 4 0 12 chain 29319 chr3 198022430 + 154648369 154648678 AluYa5 310 - 1 310 87444 309 chain 47748 chr3 198022430 + 154662119 154662700 LTR14C 587 - 0 587 60658 164 9 0 333 0 2 54 0 13 21 chain 10428 chr3 198022430 + 154662744 154662943 L1MA5A 2387 + 275 505 158569 23 42 72 26 8 9 100 chain 509618 chr3 198022430 + 154662953 154669080 L1PA6 6164 + 0 6145 6195 459 20 15 572 0 8 134 0 3 537 1 0 131 0 5 94 2 1 374 0 1 46 0 7 841 1 6 460 1 0 3 1 0 335 0 1 645 0 1 617 2 0 19 1 0 685 20 19 126 chain 10390 chr3 198022430 + 154676821 154676944 MSTA-int 1630 - 1490 1613 158743 123 chain 52030 chr3 198022430 + 154695864 154696457 HERV17-int 4347 + 3754 4347 57604 593 chain 26533 chr3 198022430 + 154696772 154697090 LTR17 781 + 0 326 97918 111 2 1 7 0 9 198 chain 285646 chr3 198022430 + 154701383 154704667 L1PA5 6144 + 2860 6138 14311 495 3 4 1263 1 0 134 0 1 882 13 0 260 0 3 12 0 2 112 0 1 109 chain 50656 chr3 198022430 + 154713005 154713681 THE1C-int 1605 - 875 1605 58534 22 4 0 36 0 1 167 15 12 40 0 7 258 0 54 118 2 1 14 chain 24916 chr3 198022430 + 154713681 154714053 THE1C 375 - 0 373 105241 25 1 0 105 0 1 47 25 24 56 9 10 83 0 1 21 chain 35383 chr3 198022430 + 154720906 154721694 THE1D-int 1627 + 0 475 75690 398 334 21 56 chain 45260 chr3 198022430 + 154721694 154722209 MER9a1 513 + 0 513 62757 445 2 0 68 chain 26367 chr3 198022430 + 154739105 154739480 LTR7B 505 - 11 505 98545 19 0 1 20 14 13 88 1 42 54 18 86 56 0 10 105 chain 56985 chr3 198022430 + 154773969 154774595 L1PA3long 6157 - 0 627 54536 282 0 1 344 chain 61275 chr3 198022430 + 154774595 154775265 L1PA3long 6157 + 4856 5526 52219 670 chain 29787 chr3 198022430 + 154789668 154789984 AluYb9 318 + 0 316 85522 316 chain 26142 chr3 198022430 + 154817448 154817740 L1PA5 6144 - 258 551 98041 80 0 1 212 chain 49661 chr3 198022430 + 154817740 154818292 L1PA5 6144 + 5033 5585 59260 552 chain 560471 chr3 198022430 + 154837205 154843233 L1PA2 6032 - 0 6032 328 290 0 3 5422 0 1 316 chain 91321 chr3 198022430 + 154927329 154928316 L1PA2 6032 - 0 988 39188 341 0 1 646 chain 28002 chr3 198022430 + 154933666 154934032 L1PA8 5853 - 0 359 92993 93 1 0 19 2 1 42 6 5 11 1 0 74 2 0 46 1 0 68 chain 38584 chr3 198022430 + 154936623 154937135 MER41A 554 - 8 526 71316 27 0 3 32 10 12 379 4 5 60 chain 292050 chr3 198022430 + 154938842 154942851 L1PA10 4194 - 33 3953 13900 11 1 0 34 3 0 92 1 0 31 0 3 37 3 4 335 1 2 242 1 0 4 0 1 24 0 1 115 2 0 5 33 4 26 8 0 227 6 0 288 0 4 21 1 0 38 3 2 94 6 0 70 0 8 22 1 0 293 0 1 169 0 4 290 15 12 67 5 8 22 0 1 420 7 8 79 7 8 58 8 0 41 1 0 451 4 2 10 22 21 48 16 8 15 1 0 10 15 12 10 9 6 5 0 1 23 1 0 7 46 20 15 2 0 21 1 0 9 chain 12198 chr3 198022430 + 154949387 154949529 L1PA6 6164 + 6020 6162 151431 142 chain 46206 chr3 198022430 + 154984096 154984852 L1PB3 3668 + 2877 3612 61843 108 0 2 18 4 5 72 0 2 53 0 2 58 17 7 15 12 11 60 1 0 98 4 3 87 20 4 17 1 0 4 2 1 16 0 1 7 3 1 29 3 11 13 1 0 10 0 1 4 6 2 13 chain 79657 chr3 198022430 + 154988929 154992218 L1PBa 3878 + 91 3003 16082 9 2 1 44 78 31 36 1 0 25 27 44 108 16 10 125 1 0 554 0 2 45 1 2 149 3 4 241 0 3 37 15 6 54 0 2 185 0 3 112 327 0 169 25 3 362 0 1 5 1 0 244 0 1 4 0 2 8 1 3 75 0 3 200 chain 30493 chr3 198022430 + 154992225 154992630 LTR7 482 - 0 482 83445 187 1 32 9 7 1 28 0 1 80 0 51 93 chain 296619 chr3 198022430 + 154994454 154998181 HERVH-int 3825 - 3 3825 13609 1726 5 10 286 4 5 218 5 0 107 1 0 41 10 1 77 1 15 557 82 174 25 1 21 14 21 0 13 2 0 200 1 0 41 7 9 282 chain 28802 chr3 198022430 + 154998196 154998587 LTR7 482 - 13 482 89890 102 4 5 82 5 0 15 9 41 73 0 50 101 chain 19060 chr3 198022430 + 154998587 154999374 L1PBa 3878 + 3003 3748 16082 52 0 2 67 4 18 78 31 17 176 5 9 54 0 1 47 47 0 32 0 1 158 3 2 21 2 0 10 chain 20210 chr3 198022430 + 155000004 155000267 MER51B 395 + 116 386 126504 69 1 0 47 1 0 13 1 0 61 0 10 70 chain 37565 chr3 198022430 + 155000565 155001034 LTR7C 471 - 0 471 72728 33 7 8 319 0 1 110 chain 24925 chr3 198022430 + 155023020 155023320 L1PA7 6471 + 6173 6470 105190 136 1 0 156 2 0 5 chain 53401 chr3 198022430 + 155024735 155025903 L1PB1 5432 - 10 911 56757 18 1 0 12 1 0 21 13 32 7 1 0 5 3 1 17 18 9 4 1 0 15 1 0 39 28 26 48 2 0 9 2 0 3 2 0 12 1 0 6 1 0 23 5 0 7 264 10 82 0 2 29 0 2 15 0 6 29 1 13 107 2 1 186 22 0 105 chain 101682 chr3 198022430 + 155041962 155043319 MER61-int 3695 + 2322 3688 36348 219 0 3 10 0 3 56 1 0 152 8 13 77 2 1 7 1 0 37 1 0 38 7 6 44 0 8 138 0 9 8 2 0 284 19 0 4 0 1 135 14 20 93 chain 56629 chr3 198022430 + 155062013 155062657 L1PA7 6471 + 5824 6468 54758 644 chain 77844 chr3 198022430 + 155112598 155113586 L1PA8A 6298 - 8 1001 44598 85 15 15 12 0 1 168 0 1 7 1 0 73 13 18 420 2 1 192 chain 41642 chr3 198022430 + 155142813 155143361 MER41A 554 - 0 554 67100 126 0 1 82 0 3 124 4 5 120 10 11 82 chain 36238 chr3 198022430 + 155144448 155144907 MER61D 487 - 0 487 74570 155 3 1 32 0 31 137 1 0 131 chain 205688 chr3 198022430 + 155155997 155158256 L1PA2 6032 + 3773 6032 18809 1328 1 0 4 0 1 926 chain 22232 chr3 198022430 + 155169850 155170203 THE1A 353 - 0 353 119201 77 1 0 97 30 31 23 16 18 11 1 0 48 0 1 34 2 0 13 chain 15317 chr3 198022430 + 155174022 155174241 MER30 238 - 1 238 140433 35 16 13 68 0 21 100 chain 4258 chr3 198022430 + 155175148 155175210 MER45C 884 - 718 773 203775 49 7 0 6 chain 37459 chr3 198022430 + 155185379 155186844 L1MA1 4479 + 228 1689 15957 20 1 5 14 13 11 80 2 0 313 5 8 136 0 5 85 1 0 140 7 15 12 16 20 8 0 2 13 4 6 251 26 6 6 7 0 305 chain 554597 chr3 198022430 + 155186851 155192877 L1PA2 6032 + 0 6032 873 4226 0 4 871 1 0 4 0 1 910 0 2 14 chain 63463 chr3 198022430 + 155192890 155195372 L1MA1 4479 + 1689 4184 15957 54 5 7 56 10 11 31 16 10 150 0 1 109 14 15 40 0 1 237 1 0 98 2 1 5 0 1 77 0 2 125 6 12 39 2 0 33 1 0 57 7 18 68 1 0 11 2 0 27 9 7 166 9 7 10 4 0 76 1 0 38 8 42 52 8 6 129 2 0 196 1 0 25 2 0 16 10 9 52 27 24 19 1 0 21 27 29 18 0 3 17 17 13 10 0 1 107 1 0 24 5 3 35 2 1 10 1 0 11 3 1 9 7 0 12 chain 29633 chr3 198022430 + 155204298 155204612 AluYb8 318 - 4 318 86119 314 chain 540303 chr3 198022430 + 155224140 155229990 L1PA2 6032 - 0 5855 2771 2214 1 2 2701 0 1 344 0 3 590 chain 33961 chr3 198022430 + 155250632 155251054 THE1D-int 1627 + 12 537 77676 135 0 1 197 1 103 89 chain 559646 chr3 198022430 + 155259685 155265838 L1PA3long 6157 + 1 6157 376 36 1 0 2058 0 1 60 0 1 1787 1 2 1283 1 0 4 0 1 739 0 1 183 chain 59639 chr3 198022430 + 155278923 155279581 L1PA3long 6157 - 0 657 53030 148 1 0 509 chain 18874 chr3 198022430 + 155330145 155330417 L1PB1 5432 + 2331 2592 130440 119 7 1 34 15 4 9 0 5 12 0 1 76 chain 457806 chr3 198022430 + 155338453 155343983 L1PA7 6471 + 703 6278 8476 451 0 1 238 0 3 767 0 1 407 1 0 70 3 0 63 0 4 478 0 8 309 3 1 152 0 1 166 10 17 651 0 1 171 0 8 284 1 0 23 2 0 5 0 2 27 1 2 556 0 13 31 0 3 76 5 7 98 5 1 196 27 29 112 0 1 141 chain 3425 chr3 198022430 + 155378881 155378918 tRNA-Glu-GAG_ 72 + 0 37 216677 37 chain 30023 chr3 198022430 + 155410973 155411288 AluYb8 318 + 1 316 84734 315 chain 302568 chr3 198022430 + 155436857 155443036 L1PB1 5432 - 43 4371 13296 19 1 0 24 2 0 14 1 0 5 8 1 18 16 6 6 2 0 16 1 0 59 2 1 50 786 72 470 3 0 45 1 0 373 2 8 254 0 3 206 5 10 126 0 4 175 714 100 310 1 0 8 0 1 179 2 0 7 1 2 186 95 0 138 16 0 33 5 6 4 1 0 22 0 1 156 339 27 222 0 10 59 34 28 31 1 0 368 7 0 7 0 8 102 50 22 305 66 0 5 0 1 15 chain 19415 chr3 198022430 + 155437101 155437311 L1PA5 6144 + 5930 6140 128636 210 chain 5288 chr3 198022430 + 155442954 155443015 L1PB1 5432 - 4289 4350 192134 61 chain 13597 chr3 198022430 + 155492371 155492573 MER30 238 + 25 238 145985 73 11 19 36 1 7 30 3 0 48 chain 24292 chr3 198022430 + 155498778 155499056 AluYb8 318 - 11 280 108693 175 5 0 9 4 0 85 chain 3076 chr3 198022430 + 155500902 155500937 Tigger4b 360 + 323 358 223423 35 chain 100048 chr3 198022430 + 155513287 155517195 L1MA3 4352 + 874 3866 36763 175 2469 1550 14 4 0 215 0 4 555 2 0 201 7 12 5 0 1 10 1 0 13 3 2 91 5 7 6 1 0 131 chain 26496 chr3 198022430 + 155533910 155534202 AluYf4 310 + 0 291 98061 132 1 0 159 chain 24223 chr3 198022430 + 155555820 155556118 AluSp 311 + 11 305 109069 33 1 0 249 3 0 12 chain 26672 chr3 198022430 + 155576488 155576770 AluYa5 310 + 0 284 97420 6 0 2 276 chain 23271 chr3 198022430 + 155580087 155580367 AluSp 311 + 20 300 114338 280 chain 12478 chr3 198022430 + 155580913 155581085 LTR8 732 + 558 732 150346 44 3 0 6 0 3 60 1 3 58 chain 6804 chr3 198022430 + 155591732 155591887 L1PB1 5432 - 45 180 178923 17 1 0 24 25 20 18 16 6 6 3 0 16 1 0 28 chain 5975 chr3 198022430 + 155635744 155635848 L1MB2 1706 - 465 575 185468 59 1 0 13 17 24 14 chain 6227 chr3 198022430 + 155644306 155644375 L1PA3long 6157 + 6088 6157 183346 69 chain 74633 chr3 198022430 + 155646326 155647131 L1PA2 6032 - 2 807 45931 805 chain 124205 chr3 198022430 + 155647131 155648477 L1PA2 6032 + 3845 5196 29625 671 0 5 675 chain 11921 chr3 198022430 + 155671761 155671919 LTR8 732 - 558 732 152506 12 0 6 118 0 9 13 0 1 15 chain 76876 chr3 198022430 + 155672394 155674314 L1PA15 4387 - 63 1404 45045 8 2 0 45 0 4 50 2 1 8 4 0 23 2 1 53 1 0 27 1 0 48 42 46 31 0 1 26 384 62 16 0 2 39 4 0 16 3 5 37 10 12 29 0 1 162 338 76 119 28 31 103 0 3 5 2 1 65 2 0 185 chain 65373 chr3 198022430 + 155678700 155680186 L1PA7 6471 - 10 794 50390 463 0 1 138 0 3 143 706 0 36 chain 58539 chr3 198022430 + 155679490 155680139 SVA_C 1631 - 0 741 53679 635 1 93 13 chain 25535 chr3 198022430 + 155694348 155694648 AluY 311 + 10 303 102077 116 7 0 177 chain 15970 chr3 198022430 + 155697152 155697416 Tigger3b 1229 - 69 341 138456 45 1 0 4 36 36 100 0 8 7 3 4 68 chain 28932 chr3 198022430 + 155697512 155697924 Tigger3 1187 - 638 1044 89317 6 1 0 256 14 11 65 8 9 15 3 0 44 chain 525327 chr3 198022430 + 155715869 155722334 L1PA7 6471 - 13 6471 4655 115 1 2 13 33 40 661 3 6 64 0 8 600 1 0 273 4 0 33 0 1 524 0 1 146 0 1 493 1 0 587 0 4 250 1 0 4 0 1 4 34 8 9 5 1 451 0 1 752 8 6 398 0 1 58 24 23 154 0 1 164 8 9 186 0 2 403 chain 16248 chr3 198022430 + 155726340 155726565 L1PA7 6471 - 10 236 137619 22 19 20 91 1 0 4 0 1 88 chain 6229 chr3 198022430 + 155726598 155726668 U3 216 - 145 215 183320 70 chain 21713 chr3 198022430 + 155726962 155727309 THE1D 372 + 0 360 121338 41 8 10 19 1 11 54 2 0 33 0 4 6 10 15 44 23 17 106 chain 28018 chr3 198022430 + 155740299 155740611 L1PA5 6144 + 5828 6140 92936 312 chain 25699 chr3 198022430 + 155752158 155752437 AluYb8 318 - 5 282 101291 187 2 0 90 chain 100681 chr3 198022430 + 155758926 155760339 LTR12C 1709 + 0 1709 36589 24 5 6 247 4 0 9 5 10 5 1 0 37 7 50 76 2 0 5 3 4 101 1 12 64 0 278 184 1 0 5 3 1 97 44 13 162 1 0 4 0 1 107 2 1 124 1 0 82 chain 7548 chr3 198022430 + 155762891 155762985 LTR7Y 441 - 0 94 173881 94 chain 11792 chr3 198022430 + 155762985 155763127 HERVH-int 3825 - 3683 3825 153080 142 chain 9473 chr3 198022430 + 155763127 155763234 LTR7Y 441 - 0 107 163202 107 chain 2170 chr3 198022430 + 155770276 155770300 LTR12C 1709 + 1019 1043 236959 24 chain 6861 chr3 198022430 + 155770336 155770460 LTR12C 1709 + 997 1168 178494 58 26 73 40 chain 480056 chr3 198022430 + 155780721 155786954 L1PA7 6471 - 12 6026 7727 50 0 6 94 0 1 342 2 0 6 0 1 100 1 0 156 18 19 20 289 0 42 2 0 164 0 1 172 21 19 286 9 10 269 1 0 154 0 1 138 1 2 148 0 1 253 0 5 421 1 4 43 1 2 20 6 7 118 1 0 222 0 1 200 0 45 275 10 0 117 0 4 523 2 0 238 1 0 75 0 1 334 0 1 16 0 1 421 5 8 51 1 0 29 0 1 285 1 14 59 1 0 18 chain 25693 chr3 198022430 + 155788416 155788790 LOR1b 457 - 18 415 101314 52 0 3 27 0 1 118 18 26 24 6 10 45 2 1 40 0 7 16 0 1 26 chain 114165 chr3 198022430 + 155790776 155792286 LTR12C 1709 + 0 1709 33043 24 10 19 203 39 40 52 8 51 75 0 1 156 8 9 34 3 0 35 0 159 254 1 0 5 3 1 106 11 4 276 1 0 54 1 0 69 1 0 65 0 1 16 chain 217773 chr3 198022430 + 155793694 155796951 L1MA3 4352 - 75 3695 18016 16 5 3 16 10 6 102 71 40 62 0 3 266 32 21 197 0 7 36 0 1 98 8 7 146 2 0 114 1 0 63 0 10 394 10 4 82 2 0 158 2 1 51 0 4 36 21 20 28 0 412 86 17 6 80 0 3 41 0 2 73 6 7 46 1 0 179 7 2 10 52 58 169 4 2 28 3 2 120 11 16 69 9 5 17 1 0 24 3 1 54 9 7 109 chain 5635 chr3 198022430 + 155798501 155798562 L1P2 5180 - 3643 3704 187867 61 chain 76388 chr3 198022430 + 155798562 155799480 L1PA7 6471 + 5528 6457 45271 93 0 3 76 0 2 457 1 7 291 chain 43246 chr3 198022430 + 155813272 155813778 L1PA7 6471 - 1 514 65123 479 0 7 27 chain 110364 chr3 198022430 + 155817074 155818450 LTR12C 1709 + 0 1709 34104 277 15 16 45 0 43 83 0 1 4 1 0 181 0 278 108 2 8 68 1 0 4 4 2 85 0 5 16 0 4 51 2 3 279 1 0 66 1 0 82 chain 23847 chr3 198022430 + 155875689 155875971 AluY 311 + 19 300 111193 114 1 0 167 chain 29148 chr3 198022430 + 155882784 155883094 AluYa5 310 + 0 309 88320 19 1 0 290 chain 466985 chr3 198022430 + 155912571 155918434 L1PA8 5853 - 0 5803 8147 93 1 0 19 3 2 62 1 0 69 3 1 45 1 0 472 1 0 81 2 0 254 0 1 290 22 0 561 0 8 510 5 0 314 0 10 123 0 4 46 0 1 84 2 6 112 0 1 658 12 0 118 0 2 166 26 5 5 0 2 305 0 2 7 1 0 104 4 5 569 2 1 426 0 4 29 9 11 59 2 3 95 44 15 11 1 0 11 2 0 21 chain 137784 chr3 198022430 + 155937524 155939125 L1PA6 6164 - 15 1612 26489 828 0 2 729 6 0 38 chain 181155 chr3 198022430 + 155939125 155943434 L1PBa 3878 + 1242 3748 20887 74 0 3 17 1 8 59 309 0 42 20 16 6 0 4 147 9 0 87 1 0 53 1 3 62 4 1 106 0 3 251 2 0 414 1515 23 89 6 1 80 1 6 152 38 41 58 0 1 162 1 0 4 0 1 4 3 0 45 0 1 11 2 1 61 0 1 128 1 0 247 2 1 22 2 0 10 chain 108110 chr3 198022430 + 155940790 155942278 LTR12C 1709 - 0 1709 34685 84 7 6 79 1 0 19 0 102 191 51 20 75 0 47 249 1 0 2 0 119 111 1 2 130 26 15 161 16 12 21 7 8 256 chain 4054 chr3 198022430 + 155944409 155944476 L1PB1 5432 + 5358 5422 206572 12 1 0 22 1 0 11 2 1 18 chain 58266 chr3 198022430 + 155948997 155949818 MER4E 760 + 0 760 53828 23 0 1 127 11 13 102 84 9 13 0 4 371 0 5 82 0 2 8 chain 5848 chr3 198022430 + 155960100 155960223 L1PB1 5432 - 8 122 186701 6 1 0 14 1 0 13 1 0 21 1 0 11 13 11 17 1 0 6 2 0 15 chain 297915 chr3 198022430 + 155996762 156000000 L1PA2 6032 - 9 3250 13535 11 1 0 1782 0 4 1444 chain 250646 chr3 198022430 + 156000000 156002779 L1HS 6032 - 3250 6032 16203 688 0 1 1199 1 0 828 0 3 63 chain 22720 chr3 198022430 + 156056092 156056389 AluSp 311 - 2 300 116982 27 0 3 133 15 14 9 1 0 112 chain 5031 chr3 198022430 + 156116397 156116512 L1PA8 5853 + 5751 5849 194816 8 2 0 28 2 5 18 32 14 25 chain 14367 chr3 198022430 + 156119753 156119948 L1PA6 6164 + 5969 6162 143318 16 2 0 5 5 7 157 2 0 8 chain 3047 chr3 198022430 + 156146323 156146355 MLT2B4 540 + 506 538 224085 32 chain 4623 chr3 198022430 + 156184183 156184244 L1MB7 1623 - 197 257 199371 49 1 0 11 chain 12862 chr3 198022430 + 156194384 156194566 L1PB1 5432 - 317 589 148790 10 3 2 85 5 96 79 chain 3665 chr3 198022430 + 156198054 156198133 MER33 330 - 4 87 212475 22 1 9 11 6 5 23 3 0 13 chain 11825 chr3 198022430 + 156198167 156198333 L1PA8 5853 + 5689 5853 152923 51 7 6 14 1 0 93 chain 28457 chr3 198022430 + 156219542 156219896 THE1A 353 - 0 353 91344 243 2 1 109 chain 10305 chr3 198022430 + 156243614 156243765 Tigger3b 1229 + 701 850 159115 5 0 1 63 9 6 74 chain 16770 chr3 198022430 + 156278089 156278324 THE1A 353 + 0 234 136197 83 1 2 25 1 0 81 8 7 36 chain 116908 chr3 198022430 + 156278745 156280303 THE1A-int 1579 + 0 1577 32156 9 7 0 7 0 12 130 4 0 26 2 8 68 7 9 233 2 1 126 16 16 144 0 1 35 10 6 92 8 9 72 0 1 464 1 13 95 chain 121583 chr3 198022430 + 156285219 156286798 THE1A-int 1579 + 0 1579 30511 378 0 1 104 0 1 4 2 0 5 4 5 184 0 1 146 6 2 65 5 6 82 3 4 233 0 13 9 12 0 72 1 0 264 chain 27272 chr3 198022430 + 156286799 156287153 THE1A 353 + 1 353 95365 83 0 1 24 2 1 168 1 0 67 1 0 8 chain 6240 chr3 198022430 + 156303359 156303452 Tigger4b 360 + 0 93 183252 20 7 0 10 0 7 56 chain 203902 chr3 198022430 + 156307458 156309845 L1PA6 6164 - 4 2416 18930 141 28 27 502 0 2 254 1 0 4 0 22 100 7 8 1130 0 2 220 chain 95612 chr3 198022430 + 156314223 156315590 L1PB1 5432 + 4092 5430 37931 21 0 3 203 0 2 85 0 1 219 5 4 182 5 3 250 0 1 37 3 2 9 3 0 20 1 0 15 14 9 11 3 1 50 19 17 42 0 2 15 3 0 7 16 8 16 3 1 4 1 0 14 3 1 23 1 0 20 4 3 8 1 0 19 1 0 4 1 0 6 chain 4092 chr3 198022430 + 156347108 156347169 MER5A 189 + 36 159 206049 9 0 63 8 1 0 43 chain 34332 chr3 198022430 + 156370249 156370662 L1PA3long 6157 - 0 396 77165 15 6 2 165 13 0 214 chain 4972 chr3 198022430 + 156401106 156401288 Tigger4a 237 - 0 71 195458 32 1 0 29 110 0 10 chain 4245 chr3 198022430 + 156429852 156429966 MLT1C 463 - 298 405 203945 8 1 0 20 1 0 5 14 8 14 23 24 28 chain 67029 chr3 198022430 + 156454527 156455321 L1PA7 6471 + 5660 6461 49645 36 7 8 20 8 11 248 0 1 244 0 2 231 chain 3655 chr3 198022430 + 156455408 156455549 MLT1F 544 + 2 143 212673 29 33 32 20 45 46 14 chain 118135 chr3 198022430 + 156458184 156459561 LTR12C 1709 + 0 1709 31761 445 0 1 204 0 278 143 0 47 106 0 4 35 0 2 444 chain 26920 chr3 198022430 + 156471959 156472337 L1PA8 5853 - 0 387 96557 111 0 29 16 19 4 11 1 0 74 3 0 43 2 1 98 chain 9675 chr3 198022430 + 156503846 156503971 MER33 330 - 35 159 162218 38 1 0 86 chain 30623 chr3 198022430 + 156506953 156507388 MLT2A1 477 + 0 473 83163 102 5 0 40 0 1 24 2 6 151 1 0 11 1 0 40 13 53 45 chain 7154 chr3 198022430 + 156509034 156509118 LTR39 781 + 45 129 176372 84 chain 131985 chr3 198022430 + 156539440 156541029 LTR12C 1709 - 0 1708 27637 84 14 13 384 0 4 106 1 0 6 1 0 258 0 118 135 2 3 157 1 0 440 chain 14550 chr3 198022430 + 156566727 156566907 L1P1 4361 + 4163 4341 142727 142 1 0 23 2 1 12 chain 67646 chr3 198022430 + 156588747 156589497 L1PA3long 6157 - 0 750 49390 750 chain 259630 chr3 198022430 + 156598099 156600950 L1PA3long 6157 + 3304 6156 15724 640 0 1 2211 chain 25452 chr3 198022430 + 156600970 156601276 THE1B-int 1605 + 1293 1598 102448 51 1 0 47 1 0 196 0 1 10 chain 25228 chr3 198022430 + 156614220 156614708 L1PA15 4387 + 3890 4366 103600 42 1 0 52 13 15 62 4 5 38 1 0 22 0 4 19 7 12 24 1 0 9 15 7 16 1 0 50 12 9 13 7 6 19 3 1 12 6 1 28 1 0 10 chain 61327 chr3 198022430 + 156615105 156616201 MER4E1 777 - 9 777 52188 22 0 1 194 5 1 4 1 0 115 316 0 263 0 1 149 9 0 18 chain 38379 chr3 198022430 + 156628412 156628928 L1PA16 3655 - 187 705 71597 78 10 1 19 0 1 61 1 0 17 0 10 77 1 0 108 0 2 144 chain 35846 chr3 198022430 + 156631968 156632404 L1PA7 6471 - 15 452 75068 135 3 2 8 3 4 268 0 1 19 chain 60428 chr3 198022430 + 156633663 156634679 L1PREC2 3366 - 291 1268 52623 12 1 0 4 1 0 11 2 0 34 10 8 35 22 8 11 3 0 30 3 1 15 53 41 11 3 0 5 1 0 42 20 19 36 2 0 5 2 0 30 1 0 30 6 10 182 9 13 384 chain 3804 chr3 198022430 + 156665427 156665470 MER47C 97 - 19 62 210333 43 chain 25387 chr3 198022430 + 156668032 156668373 L1PREC2 3366 - 542 883 102753 17 9 8 47 2 0 201 0 3 65 chain 135049 chr3 198022430 + 156671591 156673599 L1PA11 4918 - 227 2201 27011 5 1 0 9 5 3 12 7 0 13 2 0 10 16 10 18 63 47 9 2 1 15 28 22 9 4 0 20 2 1 15 2 0 46 0 1 31 2 1 65 5 0 105 6 7 31 0 5 300 0 1 183 0 1 253 25 22 63 0 7 31 0 2 41 4 9 155 0 1 341 0 1 30 2 0 22 chain 540962 chr3 198022430 + 156683931 156690293 L1PA4 6152 + 0 6152 2668 1156 0 3 1227 0 4 300 4 0 438 0 5 807 0 1 246 221 0 164 0 4 1623 1 0 7 1 0 167 chain 18953 chr3 198022430 + 156688109 156688320 L1PA4 6152 - 991 1202 129730 211 chain 25936 chr3 198022430 + 156716662 156717028 THE1C 375 + 0 364 100271 87 5 6 93 0 1 13 2 1 27 24 21 115 chain 4824 chr3 198022430 + 156718566 156718627 THE1C 375 + 0 59 197088 14 2 0 45 chain 9595 chr3 198022430 + 156718653 156718779 THE1C 375 + 86 212 162622 126 chain 8483 chr3 198022430 + 156718814 156718931 THE1C 375 + 243 355 168394 14 5 1 21 1 0 76 chain 29244 chr3 198022430 + 156723788 156724093 AluYb8 318 - 13 318 87831 305 chain 23599 chr3 198022430 + 156724721 156724994 AluY 311 + 13 287 112592 62 0 2 46 2 0 114 0 1 49 chain 108831 chr3 198022430 + 156738084 156739276 L1PA3long 6157 - 15 1207 34481 1192 chain 3232 chr3 198022430 + 156744933 156745018 MER63B 433 + 339 426 220388 22 13 20 12 15 10 23 chain 30910 chr3 198022430 + 156820502 156820929 L1PA8 5853 + 5433 5853 82668 131 1 0 43 3 1 70 2 1 9 1 0 47 18 17 8 1 0 93 chain 34465 chr3 198022430 + 156835978 156836419 MER4A1 472 - 0 469 76967 216 0 21 54 0 1 126 7 13 38 chain 7779 chr3 198022430 + 156857726 156857822 MER30 238 - 0 99 172425 43 1 4 52 chain 7297 chr3 198022430 + 156871336 156871424 HY4 93 + 0 90 175463 78 0 2 10 chain 110186 chr3 198022430 + 156895729 156897547 SVA_A 1864 - 3 1445 34162 718 1 0 8 2 0 96 11 14 38 2 0 35 8 6 60 1 0 7 5 3 36 41 0 34 39 0 60 34 0 18 3 1 22 1 4 48 2 0 37 2 0 35 10 12 29 7 8 17 66 0 25 39 0 46 150 0 25 chain 2127 chr3 198022430 + 156896757 156896796 SVA_A 1864 - 1098 1137 116602 39 chain 1037 chr3 198022430 + 156896832 156896863 SVA_A 1864 - 948 977 84778 3 2 0 26 chain 903 chr3 198022430 + 156897287 156897314 SVA_A 1864 - 1071 1098 84778 27 chain 3747 chr3 198022430 + 156897372 156897429 SVA_A 1864 - 857 914 131583 57 chain 3044 chr3 198022430 + 156897431 156897522 SVA_A 1864 - 1100 1191 84778 91 chain 294166 chr3 198022430 + 156908820 156912174 L1PA5 6144 - 1 3375 13756 14 0 3 347 0 1 276 2 1 196 9 10 441 0 1 1615 0 15 454 chain 2671 chr3 198022430 + 156912174 156912217 MER4C 627 + 569 611 230761 14 2 1 27 chain 24872 chr3 198022430 + 156997534 156997822 AluSc 308 + 10 298 105499 288 chain 29080 chr3 198022430 + 157022891 157023198 AluYa5 310 - 4 310 88643 213 1 0 93 chain 93636 chr3 198022430 + 157042705 157043979 L1PA11 4918 - 340 1594 38462 11 3 1 12 1 0 15 42 28 23 1 0 12 3 1 81 2 1 65 7 0 567 6 14 423 chain 539136 chr3 198022430 + 157057835 157063958 L1PA5 6144 + 3 6125 2962 429 11 9 592 1 0 1280 1 0 311 4 5 34 1 0 586 0 1 1250 0 3 386 1 0 408 10 8 566 0 1 122 0 1 130 chain 14121 chr3 198022430 + 157110052 157110254 THE1B 368 - 106 313 144134 16 0 8 47 22 19 117 chain 29743 chr3 198022430 + 157115168 157115520 L1PA10 4194 - 48 407 85685 30 3 0 95 0 10 224 chain 5125 chr3 198022430 + 157116718 157116781 MLT2B3 573 - 510 573 193833 63 chain 32060 chr3 198022430 + 157136268 157136695 L1PA10 4194 + 3733 4158 80757 224 1 0 102 0 3 54 4 1 29 2 1 11 chain 27053 chr3 198022430 + 157141805 157142160 THE1A 353 + 0 353 96105 15 2 0 32 0 1 48 1 0 257 chain 112805 chr3 198022430 + 157142160 157143607 THE1A-int 1579 + 0 1573 33442 363 0 1 106 1 2 545 0 107 80 0 5 111 3 4 46 0 11 192 chain 26673 chr3 198022430 + 157143613 157143971 THE1A 353 + 0 353 97414 15 2 0 32 0 1 48 1 0 92 6 3 162 chain 121856 chr3 198022430 + 157174594 157176238 L1PA13 3608 - 164 1853 30427 48 2 0 5 1 0 28 0 1 28 6 5 56 2 0 114 1 0 26 10 4 92 1 0 51 1 0 354 2 16 167 0 3 283 8 10 124 4 5 56 0 37 22 7 9 145 chain 11631 chr3 198022430 + 157199079 157199222 L1P4 1494 + 667 810 153769 143 chain 91922 chr3 198022430 + 157228004 157229181 L1PA8 5853 + 4681 5845 38990 56 0 2 270 0 2 76 0 1 213 21 0 14 0 9 160 0 1 77 1 0 47 2 0 69 2 1 8 2 1 52 2 1 18 2 1 85 chain 3989 chr3 198022430 + 157229729 157229807 L1ME1 1623 + 1446 1522 207544 39 19 17 20 chain 4857 chr3 198022430 + 157263517 157263602 MER5A1 166 - 42 137 196710 27 3 1 10 6 18 39 chain 39456 chr3 198022430 + 157281938 157282434 THE1A-int 1579 - 1081 1577 70081 127 0 1 247 10 9 112 chain 12117 chr3 198022430 + 157296849 157297016 MLT2A1 477 + 0 181 151753 33 1 18 117 5 2 11 chain 37480 chr3 198022430 + 157297016 157297471 LTR2 463 - 0 456 72842 88 21 22 346 chain 518862 chr3 198022430 + 157297483 157304538 HERVE_a-int 7009 - 3 6839 5283 7 1 0 8 2 0 21 58 48 30 2 0 25 1 0 13 3 1 6 1 0 30 1 0 27 3 1 54 3 0 35 2 1 55 7 5 27 1 0 4 1 0 48 1 0 20 1 0 37 1 0 7 2 0 5 1 0 16 2 1 9 1 0 31 1 0 45 2 1 71 0 2 61 3 1 80 1 0 12 1 0 20 3 1 56 1 0 3 1 0 15 8 7 13 1 2 82 2 0 143 0 1 81 0 1 31 1 0 11 7 6 49 0 1 31 1 0 30 1 0 34 1 0 7 1 0 67 0 1 7 1 0 8 1 0 29 1 0 111 9 0 199 1 0 137 0 4 845 16 3 49 0 1 123 1 2 353 0 1 37 1 0 498 1 0 85 1 0 348 15 0 57 1 0 168 1 0 38 1 0 14 1 0 144 1 0 8 38 31 28 6 4 25 2 1 94 1 0 12 1 0 24 1 0 16 2 1 24 1 0 43 2 1 36 1 0 5 1 0 37 1 0 61 2 1 37 1 0 43 1 0 18 1 0 4 22 20 9 2 1 8 3 2 20 1 0 18 1 0 116 1 0 16 1 0 23 1 0 35 6 0 22 2 0 57 1 0 5 1 0 5 1 0 9 10 8 5 1 0 23 1 0 15 1 0 5 1 0 21 4 0 12 12 10 11 1 0 21 1 0 52 1 0 16 2 0 38 1 0 32 2 1 73 2 1 7 0 1 25 1 0 67 1 0 27 2 0 55 1 0 10 2 1 32 2 1 14 2 1 12 1 0 98 1 0 34 1 0 22 1 0 32 1 0 21 2 1 43 1 0 25 4 2 34 28 0 19 46 36 14 1 0 8 1 0 8 1 0 4 1 0 23 9 5 70 1 0 6 1 0 15 chain 37276 chr3 198022430 + 157305336 157305795 LTR2 463 - 0 463 73122 88 12 13 304 0 3 55 chain 4768 chr3 198022430 + 157306115 157306172 MLT2A1 477 + 421 477 197726 5 1 0 51 chain 27905 chr3 198022430 + 157328664 157329040 THE1C 375 + 0 375 93348 172 1 0 4 2 0 35 9 12 126 1 0 26 chain 82956 chr3 198022430 + 157390926 157391899 L1PA7 6471 + 5495 6469 42354 119 0 3 250 0 1 584 1 0 7 2 0 10 chain 536998 chr3 198022430 + 157402994 157409100 L1PA4 6152 + 0 6141 3311 580 1 0 877 0 1 1318 0 4 734 1 2 175 0 2 458 0 3 945 27 53 220 1 0 769 chain 3915 chr3 198022430 + 157424671 157424722 MER5A1 166 + 114 165 208637 51 chain 547819 chr3 198022430 + 157442486 157448512 L1PA2 6032 + 3 6030 1726 69 1 2 183 1 0 1941 1 0 142 0 1 228 1 0 1489 0 1 1138 1 2 831 chain 149500 chr3 198022430 + 157460422 157462823 L1PB1 5432 - 12 2412 24687 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 35 24 8 3 0 8 12 11 17 4 16 7 1 0 15 3 2 50 3 1 11 4 0 7 5 4 9 1 0 24 1 0 6 6 7 297 3 0 123 0 4 45 0 3 179 1 2 67 0 1 17 5 0 208 4 8 415 2 4 16 10 15 273 192 195 95 59 62 52 chain 4900 chr3 198022430 + 157469760 157469820 LTR16A1 462 + 391 451 196272 60 chain 90279 chr3 198022430 + 157496703 157498009 L1PB2 3958 + 2492 3827 39544 6 0 1 126 4 12 283 7 6 15 1 0 53 12 16 128 4 3 166 2 0 56 1 0 14 10 5 51 9 7 11 4 0 94 1 0 9 5 13 48 1 0 66 5 4 28 0 1 35 5 33 4 1 0 41 chain 469559 chr3 198022430 + 157516324 157522021 L1PA7 6471 - 2 5714 8048 10 2 0 89 0 11 36 2 1 14 5 6 107 2 0 211 0 3 360 1 0 567 0 1 455 0 1 111 0 1 238 8 10 291 0 1 39 8 6 157 1 2 25 0 4 599 0 8 207 0 3 74 9 3 177 7 0 686 1 0 1198 chain 30291 chr3 198022430 + 157557225 157557558 L1PA3long 6157 + 5824 6157 83958 333 chain 540846 chr3 198022430 + 157597122 157603288 L1PA4 6152 + 6 6151 2684 511 4 1 62 1 0 187 28 2 270 0 1 422 1 2 1839 0 1 197 6 8 182 0 2 1607 0 2 849 chain 26939 chr3 198022430 + 157613059 157613351 L1PA2 6032 + 5726 6018 96488 292 chain 539849 chr3 198022430 + 157614608 157620626 L1PA3long 6157 + 2 6157 2835 150 0 1 420 0 4 200 1 129 139 0 1 2914 3 0 283 1 0 1067 0 4 828 0 3 12 chain 24019 chr3 198022430 + 157643051 157643400 L1PA13 3608 - 176 517 110221 36 2 0 5 1 0 29 1 0 21 7 6 59 4 3 113 1 0 28 1 0 41 chain 4487 chr3 198022430 + 157649342 157649396 MER45A 178 - 28 82 200954 54 chain 118716 chr3 198022430 + 157668487 157669841 L1PA5 6144 + 4786 6144 31525 508 0 2 271 0 2 575 chain 40031 chr3 198022430 + 157693086 157693523 L1PA3long 6157 + 5720 6157 69276 437 chain 22113 chr3 198022430 + 157705483 157705780 L1PREC2 3366 + 2069 2358 119732 242 12 4 43 chain 38009 chr3 198022430 + 157705792 157706217 L1PA5 6144 + 5719 6144 72120 425 chain 232440 chr3 198022430 + 157710514 157713366 L1PA6 6164 + 3273 6152 17174 5 2 0 177 0 3 65 0 1 152 0 2 25 1 0 13 0 6 366 6 0 83 2 1 153 0 15 9 13 17 411 37 37 200 1 0 298 0 4 88 0 1 295 0 6 40 7 3 403 chain 184642 chr3 198022430 + 157719035 157721246 L1PA7 6471 - 1558 3768 20531 1217 0 1 75 0 1 96 2 0 26 9 7 127 0 1 154 0 1 363 6 5 136 chain 123390 chr3 198022430 + 157721249 157722771 L1PA7 6471 + 4933 6463 29920 17 1 0 100 0 1 427 0 3 142 0 7 43 28 27 231 0 3 116 4 0 413 chain 106345 chr3 198022430 + 157727596 157729210 THE1C-int 1605 - 6 1605 35168 27 3 0 15 0 1 39 6 0 217 1 4 115 5 0 288 62 61 66 16 25 15 31 25 43 1 12 114 0 3 73 53 11 8 32 0 268 1 55 98 3 2 14 chain 3508 chr3 198022430 + 157735908 157735947 Tigger5 388 - 36 75 215236 39 chain 563319 chr3 198022430 + 157737465 157743493 L1HS 6032 + 0 6028 261 6028 chain 4417 chr3 198022430 + 157751609 157751657 L1PBb 2709 + 1812 1860 201715 48 chain 530775 chr3 198022430 + 157751942 157758392 L1PA5 6144 + 3 6139 4109 117 1 15 14 16 2 894 2 1 362 1 6 32 3 2 898 1 0 824 1 0 31 0 1 2091 0 1 178 316 0 419 1 0 248 chain 28549 chr3 198022430 + 157757418 157757724 AluYb8 318 + 0 305 90968 209 1 0 96 chain 258686 chr3 198022430 + 157783420 157787182 L1P2 5180 + 1226 4786 15769 381 1 0 124 0 290 14 4 5 553 0 2 62 0 1 128 0 4 16 0 1 355 1 3 7 2 0 11 1 0 114 0 1 481 245 0 159 4 6 391 1 2 297 260 1 134 1 2 15 chain 17575 chr3 198022430 + 157785688 157785908 AluSq10 312 + 83 302 134063 45 1 0 174 chain 7844 chr3 198022430 + 157786772 157786859 L1PA3long 6157 + 5918 6005 172053 87 chain 12906 chr3 198022430 + 157786859 157787000 L1PA3long 6157 + 6016 6157 148607 141 chain 15767 chr3 198022430 + 157806207 157806386 AluYf5 307 + 118 297 139066 179 chain 58340 chr3 198022430 + 157832219 157832960 L1PA10 4194 - 33 770 53783 11 1 0 34 3 0 40 3 0 424 0 4 39 6 5 180 chain 3130 chr3 198022430 + 157838264 157838301 MADE1 96 + 11 48 222356 37 chain 37800 chr3 198022430 + 157840378 157840820 L1PA5 6144 - 0 450 72417 30 0 8 412 chain 3275 chr3 198022430 + 157848941 157848976 L1PA6 6164 - 5 40 219443 35 chain 244721 chr3 198022430 + 157861920 157864675 L1PA5 6144 - 1 2758 16517 6 6 0 836 0 4 938 0 3 175 0 1 794 chain 4964 chr3 198022430 + 157875996 157876150 MER8 282 + 0 229 195537 29 53 126 19 17 19 36 chain 17977 chr3 198022430 + 157893534 157893785 L1P2 5180 - 3660 3897 131563 44 2 1 79 14 1 112 chain 153007 chr3 198022430 + 157893785 157895574 L1PA6 6164 + 4348 6149 24229 430 0 1 114 0 5 239 0 1 180 0 4 619 0 1 29 2 1 4 1 0 143 0 2 28 chain 371674 chr3 198022430 + 157912292 157916601 L1PA4 6152 - 0 6152 11035 6 0 5 137 0 1 262 6 5 693 0 1 572 2 0 1305 0 1 89 0 9 329 0 1 534 7 9 216 10 1822 14 0 14 127 chain 12559 chr3 198022430 + 157923515 157923704 MER30 238 - 1 213 150011 38 3 0 24 11 17 29 4 24 80 chain 8899 chr3 198022430 + 157931759 157931983 MER2 342 + 29 293 166143 27 64 82 8 0 3 38 0 3 37 20 36 30 chain 7839 chr3 198022430 + 157941110 157941229 MER58D 378 - 2 123 172083 94 9 11 16 chain 25461 chr3 198022430 + 157955471 157955764 L1PA6 6164 - 1876 2174 101208 213 0 5 80 chain 147484 chr3 198022430 + 157955764 157957518 L1PA6 6164 + 4261 6162 24963 283 0 1 772 0 7 210 0 1 170 0 4 99 11 143 200 0 2 9 chain 29072 chr3 198022430 + 157963851 157964188 L1PA4 6152 + 5807 6143 88672 78 6 5 253 chain 6138 chr3 198022430 + 157965712 157965785 L1PA11 4918 + 3802 3875 184100 73 chain 272383 chr3 198022430 + 157971567 157975121 L1PA6 6164 - 10 3260 15054 651 302 0 311 1 0 23 1 6 602 0 9 187 5 0 374 0 1 131 0 1 160 10 0 507 2 1 220 5 4 62 chain 7332 chr3 198022430 + 157996096 157996245 Cheshire 1285 - 1135 1278 175213 54 22 23 42 3 1 9 6 1 13 chain 186243 chr3 198022430 + 158001685 158003734 L1PA3long 6157 - 3 2053 20398 146 1 0 1441 0 2 461 chain 28309 chr3 198022430 + 158034227 158034531 AluYf4 310 - 4 309 91907 98 0 1 206 chain 8335 chr3 198022430 + 158035859 158035960 MER30 238 + 137 238 169201 101 chain 21189 chr3 198022430 + 158036902 158037267 THE1D 372 + 0 372 123244 129 3 0 11 98 108 124 chain 533392 chr3 198022430 + 158042024 158048152 L1PA5 6144 - 1 6140 3793 588 0 1 253 0 4 1606 0 1 389 0 1 4 16 6 34 0 5 158 0 2 1156 1 0 100 0 1 172 3 0 5 1 0 977 1 4 574 0 8 90 chain 12810 chr3 198022430 + 158048619 158048996 THE1B 368 - 0 368 149016 49 23 17 50 132 146 66 0 5 10 28 6 19 chain 22854 chr3 198022430 + 158050753 158051019 AluYk4 311 - 8 274 116316 266 chain 29159 chr3 198022430 + 158056799 158057113 AluYb8 318 + 0 314 88258 314 chain 24563 chr3 198022430 + 158057831 158058493 THE1A 353 + 0 353 107178 25 1 2 82 2 1 88 1 0 11 319 11 133 chain 120660 chr3 198022430 + 158058493 158060033 THE1A-int 1579 + 0 1573 30813 96 11 21 208 0 19 149 0 3 175 7 8 134 0 3 6 4 1 349 0 1 162 1 0 238 chain 27589 chr3 198022430 + 158060038 158060392 THE1A 353 + 0 353 94383 26 0 1 83 1 0 88 1 0 155 chain 5580 chr3 198022430 + 158077792 158078052 MER52D 1964 - 705 817 189281 39 92 15 18 78 7 33 chain 213217 chr3 198022430 + 158082941 158085485 L1PA7 6471 - 5 2562 18282 7 3 0 138 2 3 186 0 1 409 2 0 98 0 3 642 2 0 156 1 0 46 0 3 102 10 14 187 0 8 436 1 0 3 6 0 15 0 1 85 0 7 7 chain 12968 chr3 198022430 + 158116002 158116419 MLT1A1 405 - 15 405 148362 68 1 0 6 31 0 4 17 0 46 6 5 23 150 177 24 0 1 12 5 0 24 chain 29369 chr3 198022430 + 158116932 158117244 AluYa5 310 - 0 310 87209 184 2 0 126 chain 14925 chr3 198022430 + 158130655 158130846 L1PA10 4194 + 3962 4150 141560 153 9 6 29 chain 334949 chr3 198022430 + 158139881 158143586 L1PA3long 6157 - 15 3718 12028 1418 1 0 22 0 1 197 0 1 145 0 4 242 6 0 1399 4 1 259 0 2 12 chain 205642 chr3 198022430 + 158155209 158157607 L1PA6 6164 + 3759 6159 18814 161 0 1 85 5 0 1203 0 1 20 6 7 75 0 4 843 chain 12387 chr3 198022430 + 158157764 158157921 L1PA8 5853 + 5698 5853 150682 45 1 0 17 1 0 93 chain 3313 chr3 198022430 + 158160550 158160588 Tigger1 2417 + 1461 1499 218729 38 chain 131388 chr3 198022430 + 158161921 158163433 L1PA5 6144 + 4607 6124 27782 598 4 6 5 1 0 81 0 4 823 chain 6314 chr3 198022430 + 158167418 158167490 L1PA5 6144 - 3 75 182680 72 chain 27312 chr3 198022430 + 158190409 158190710 L1PA5 6144 - 778 1078 95235 72 1 0 228 chain 23067 chr3 198022430 + 158190710 158190968 L1PA5 6144 + 5391 5649 114866 258 chain 43968 chr3 198022430 + 158190968 158191450 L1PA5 6144 + 5650 6132 64238 482 chain 3454 chr3 198022430 + 158192494 158192541 Tigger1 2417 - 654 698 216121 37 3 0 7 chain 9504 chr3 198022430 + 158214873 158215031 L1MB2 1706 - 12 155 163046 7 0 1 75 1 0 13 1 0 14 10 4 9 8 0 20 chain 388536 chr3 198022430 + 158215526 158221077 L1PB1 5432 - 151 5371 10498 44 1 0 16 2 1 50 2 0 11 21 16 5 1 0 23 9 0 15 9 0 44 18 19 69 4 0 152 0 4 6 0 2 6 0 2 164 30 23 647 311 0 114 0 1 115 5 7 86 9 25 600 1 0 125 0 3 8 0 1 15 6 8 11 2 1 16 1 0 167 16 12 11 0 1 46 0 3 46 0 1 606 0 2 154 0 10 57 1 0 95 3 4 193 27 16 7 1 0 120 0 4 22 0 2 473 0 1 169 9 13 63 4 5 63 7 0 124 19 0 68 0 1 206 chain 537561 chr3 198022430 + 158228905 158234910 L1PA3long 6157 - 8 6157 3223 194 17 0 50 1 2 595 0 4 144 0 5 1607 4 0 31 0 2 251 0 2 1199 0 19 843 0 1 122 0 1 173 0 128 205 0 1 417 0 1 152 chain 9038 chr3 198022430 + 158248597 158248694 L1HS 6032 + 5933 6030 165395 97 chain 9011 chr3 198022430 + 158259914 158260036 L1MB8 1703 + 1366 1486 165532 57 2 1 11 1 0 51 chain 45081 chr3 198022430 + 158267462 158268090 LTR12 884 - 133 884 62962 96 39 7 10 11 14 241 0 154 20 0 1 150 2 0 32 1 0 26 chain 117871 chr3 198022430 + 158273258 158274835 THE1B-int 1605 + 0 1592 31842 107 0 3 37 0 1 229 0 1 54 14 40 210 16 15 9 2 1 41 17 18 368 7 16 25 1 2 226 0 1 95 26 0 93 chain 23523 chr3 198022430 + 158277139 158277419 THE1D-int 1627 + 44 325 113001 23 0 1 257 chain 6828 chr3 198022430 + 158299037 158299557 L1MCa 1829 + 213 695 178734 47 356 313 44 49 54 24 chain 17855 chr3 198022430 + 158302899 158303313 MSTB1 431 + 35 431 133223 20 9 21 9 10 0 16 2 0 35 21 8 27 6 0 35 6 9 53 73 72 79 1 0 12 chain 19253 chr3 198022430 + 158306184 158306413 AluY 311 + 74 306 129369 46 4 7 179 chain 45242 chr3 198022430 + 158329878 158330384 L1PA4 6152 + 5638 6143 62777 370 1 0 135 chain 7439 chr3 198022430 + 158335196 158335293 MER4-int 2692 + 645 735 174525 73 7 0 17 chain 2993 chr3 198022430 + 158335297 158335332 THE1C 375 + 4 39 225184 35 chain 37250 chr3 198022430 + 158339002 158339424 LTR3 431 - 7 431 73167 318 0 2 104 chain 39725 chr3 198022430 + 158340749 158341271 LTR10G 522 - 0 522 69720 68 0 1 4 1 0 5 3 1 90 0 1 314 1 0 16 9 11 11 chain 23968 chr3 198022430 + 158346939 158347305 THE1B 368 + 0 367 110526 169 1 0 22 51 53 123 chain 4988 chr3 198022430 + 158348049 158348288 MLT2A2 560 - 0 251 71768 147 0 11 71 0 1 21 chain 59292 chr3 198022430 + 158348802 158349569 MER4E1 777 - 0 777 53231 230 6 2 111 0 1 85 13 32 37 0 1 215 11 4 59 chain 6386 chr3 198022430 + 158349576 158349882 MLT2A2 560 - 255 560 71768 87 36 35 183 chain 69124 chr3 198022430 + 158350402 158352312 Charlie3 2679 - 0 924 48751 76 2 0 25 9 14 10 17 0 5 1 0 90 2 3 295 982 10 396 chain 62219 chr3 198022430 + 158350954 158351899 MER11A 1151 - 0 1124 51789 60 7 6 12 2 1 81 1 0 96 1 33 18 0 2 6 31 57 30 0 4 39 3 4 11 6 9 27 0 18 270 0 1 38 0 2 32 8 5 68 2 1 21 2 0 45 1 100 27 chain 559641 chr3 198022430 + 158352312 158358329 L1PA2 6032 + 12 6029 377 6017 chain 16361 chr3 198022430 + 158395046 158395275 Tigger1 2417 + 725 960 137308 134 0 2 53 14 18 28 chain 22453 chr3 198022430 + 158439607 158439895 AluSp 311 + 10 302 118227 42 2 1 169 1 0 54 0 6 20 chain 94413 chr3 198022430 + 158474703 158475736 L1PA4 6152 - 0 1032 38231 267 1 0 765 chain 35712 chr3 198022430 + 158493538 158494197 MER51A 677 - 16 668 75255 48 1 0 85 18 16 66 0 1 19 144 0 57 7 8 30 5 8 9 0 135 170 chain 3696 chr3 198022430 + 158493801 158493892 MER51A 677 - 287 478 212001 15 0 2 28 32 130 16 chain 130949 chr3 198022430 + 158533446 158534877 L1PA3long 6157 - 2 1437 27875 841 0 4 590 chain 68811 chr3 198022430 + 158534877 158535632 L1PA3long 6157 + 3984 4739 48698 755 chain 3876 chr3 198022430 + 158564366 158564409 5S 121 - 31 74 209208 43 chain 190381 chr3 198022430 + 158571721 158574479 L1PB3 3668 - 102 2832 20007 23 0 1 13 3 1 25 2 0 21 20 4 83 5 4 101 1 0 64 17 18 39 30 34 73 4 0 46 1 0 13 5 1 4 0 1 10 10 8 36 0 2 262 0 1 13 1 0 98 5 18 10 0 1 131 0 1 239 1 0 51 23 16 540 16 2 164 1 2 165 1 0 22 3 0 5 10 4 82 0 1 136 2 0 47 2 1 5 0 1 67 0 13 7 chain 16882 chr3 198022430 + 158607831 158608058 L1P3 4156 - 17 234 135884 24 2 1 9 3 1 80 1 0 3 6 0 99 chain 4997 chr3 198022430 + 158608319 158608395 L1PB1 5432 - 28 100 195165 13 1 0 20 2 1 24 2 0 14 chain 12434 chr3 198022430 + 158608727 158609036 L1PB1 5432 + 5114 5383 150517 33 30 23 50 2 1 16 1 0 44 13 0 15 3 0 6 43 31 13 2 0 22 5 4 11 chain 387458 chr3 198022430 + 158654992 158660353 L1PB1 5432 + 19 5416 10536 174 26 17 82 0 1 25 13 15 73 1 0 139 2 0 42 0 4 13 0 7 82 0 4 58 0 4 73 11 17 325 0 3 26 4 5 20 0 2 17 0 4 151 7 2 34 8 11 62 1 0 137 6 7 15 4 6 28 1 0 142 8 12 56 1 8 150 0 4 105 1 2 64 2 0 5 6 8 231 1 2 106 0 4 237 1 2 88 0 4 146 10 13 5 0 1 61 1 0 85 0 3 202 1 2 34 0 4 239 1 3 393 0 1 13 0 18 12 1 0 100 26 0 48 1 0 18 0 5 112 1 0 169 0 2 116 8 3 61 7 10 283 0 2 5 1 0 9 4 3 23 1 0 8 2 0 11 5 1 9 2 0 10 0 2 41 15 17 44 1 0 7 33 20 14 7 5 5 1 0 14 2 0 24 1 0 21 2 5 8 1 0 12 chain 72913 chr3 198022430 + 158675080 158675871 L1PA2 6032 - 0 790 47061 158 1 0 632 chain 27642 chr3 198022430 + 158682462 158682905 MLT2A2 560 - 0 560 94236 88 7 12 47 9 118 28 0 1 32 38 41 9 2 1 183 chain 513206 chr3 198022430 + 158703396 158709814 L1PA7 6471 - 10 6466 5865 231 6 7 205 1 2 395 7 6 9 1 0 104 0 5 66 0 1 577 2 6 736 2 3 389 12 13 40 0 2 621 0 1 405 1 2 114 0 2 189 1 2 4 1 0 63 1 0 141 1 0 271 0 1 118 0 1 450 7 26 351 4 0 6 3 7 68 3 2 37 2 1 34 0 5 9 6 16 131 12 9 104 1 0 23 0 1 47 45 35 123 7 8 231 chain 121650 chr3 198022430 + 158728503 158729910 L1PA4 6152 - 9 1414 30498 142 26 26 1139 2 0 98 chain 32103 chr3 198022430 + 158739905 158740345 LTR14B 630 + 0 630 80686 55 0 149 72 0 28 103 8 18 115 11 14 76 chain 39576 chr3 198022430 + 158751148 158751651 L1PA7 6471 - 8 513 69927 145 4 5 147 12 4 148 0 9 47 chain 11505 chr3 198022430 + 158752100 158752237 L1PA7 6471 - 80 217 154280 137 chain 19049 chr3 198022430 + 158757255 158757516 Tigger2b_Pri 1066 - 527 790 129978 40 16 17 125 0 1 80 chain 27954 chr3 198022430 + 158768722 158769077 THE1A 353 + 0 353 93150 110 1 0 92 1 0 151 chain 119646 chr3 198022430 + 158769077 158770587 THE1A-int 1579 + 0 1565 31161 113 7 10 252 0 1 97 9 12 124 10 30 46 0 1 25 1 0 11 0 1 317 1 10 104 4 5 231 0 11 10 0 1 31 0 5 117 chain 28621 chr3 198022430 + 158770601 158770956 THE1A 353 + 0 353 90652 108 1 0 94 1 0 151 chain 94364 chr3 198022430 + 158773790 158774819 L1PA2 6032 - 16 1046 38241 134 0 1 895 chain 4519 chr3 198022430 + 158779173 158779225 MADE1 96 - 2 54 200564 52 chain 493173 chr3 198022430 + 158802708 158808213 L1PA3long 6157 - 0 6153 7218 849 0 1 215 0 1 4187 4 132 59 8 0 91 0 526 92 chain 565966 chr3 198022430 + 158813152 158819183 L1HS 6032 - 0 6032 159 5959 0 1 72 chain 20596 chr3 198022430 + 158833573 158833871 L1PA7 6471 + 6185 6470 125311 91 23 12 20 5 6 4 1 0 143 2 0 9 chain 184057 chr3 198022430 + 158878323 158880379 L1PA3long 6157 - 0 2059 20585 338 0 1 323 0 3 92 1 0 1302 chain 84963 chr3 198022430 + 158880379 158881316 L1PA3long 6157 + 3161 4098 41528 937 chain 37390 chr3 198022430 + 158900235 158900780 LTR2 463 - 0 463 72968 88 12 13 149 90 6 20 0 1 186 chain 5354 chr3 198022430 + 158900488 158900555 LTR2 463 - 258 331 191490 18 0 1 24 0 5 25 chain 97537 chr3 198022430 + 158949290 158950637 L1P1 4361 - 588 1848 37409 172 0 1 5 1 0 418 1 0 18 1 0 82 6 9 190 2 0 35 0 3 9 93 0 267 0 4 47 chain 15409 chr3 198022430 + 158979177 158979501 THE1C 375 + 0 375 140169 13 2 0 34 0 6 17 21 22 15 6 7 15 6 10 12 50 91 133 chain 17800 chr3 198022430 + 158996873 158997174 THE1B 368 + 0 306 133405 68 20 21 80 1 0 21 7 10 14 13 16 12 2 1 63 chain 51104 chr3 198022430 + 159004164 159005028 L1PA15 4387 - 31 875 58247 28 18 12 46 11 8 14 47 42 21 1 0 26 40 39 15 2 1 171 1 0 13 1 3 25 3 1 65 15 13 301 chain 6368 chr3 198022430 + 159015092 159015209 L1MA9 1812 - 170 280 182255 26 3 1 35 1 0 13 3 1 24 1 0 4 1 0 6 chain 24664 chr3 198022430 + 159021650 159021944 L1PA2 6032 - 0 294 106645 161 0 3 6 4 1 123 chain 30592 chr3 198022430 + 159033935 159034373 MLT2A1 477 - 2 477 83214 18 1 0 39 6 36 202 0 1 5 1 5 28 0 1 61 16 18 61 chain 214346 chr3 198022430 + 159034373 159037029 HERVL-int 5654 - 0 2593 18207 225 0 6 198 6 5 158 1 7 262 0 1 516 1 0 4 0 1 358 0 2 79 1 0 635 0 1 49 80 3 83 chain 145721 chr3 198022430 + 159053139 159054814 L1PA4 6152 - 0 1683 25221 6 0 7 143 4 3 963 0 1 252 0 1 307 chain 54027 chr3 198022430 + 159054814 159055431 L1PA4 6152 + 3815 4435 56285 72 0 2 369 0 1 176 chain 22608 chr3 198022430 + 159062755 159063037 AluSg7 307 + 0 302 117554 54 2 21 56 0 1 170 chain 13719 chr3 198022430 + 159070963 159071111 L1PA4 6152 + 6003 6151 145541 148 chain 11567 chr3 198022430 + 159073884 159074008 L1PA2 6032 + 5906 6030 154034 124 chain 19696 chr3 198022430 + 159084937 159085202 AluSp 311 + 38 297 128115 198 8 4 10 1 0 17 4 3 27 chain 267839 chr3 198022430 + 159099899 159102854 L1PA3long 6157 - 0 2955 15301 123 0 1 301 0 1 2392 2 0 137 chain 48141 chr3 198022430 + 159103497 159104065 L1PA7 6471 - 7 580 60369 5 3 0 92 0 8 468 chain 537908 chr3 198022430 + 159110107 159116139 L1PA3long 6157 - 5 6157 3164 173 0 3 66 4 0 2547 4 0 2459 8 136 234 4 0 381 1 2 151 chain 19030 chr3 198022430 + 159119479 159119695 L1PA4 6152 - 1037 1254 128748 7 0 1 209 chain 91769 chr3 198022430 + 159119695 159120725 L1PA4 6152 + 5108 6146 39041 23 0 8 1007 chain 547942 chr3 198022430 + 159140857 159146994 L1PA3long 6157 + 0 6157 1716 988 0 17 185 0 3 247 1 0 1742 0 9 864 16 0 37 0 1 264 0 4 128 1 3 1574 8 9 82 chain 45719 chr3 198022430 + 159157381 159158159 L1PA11 4918 - 451 1196 62299 48 18 16 8 1 0 64 1 0 150 3 0 12 18 0 109 1 0 44 2 3 81 69 68 14 7 0 72 6 1 6 0 5 44 chain 71743 chr3 198022430 + 159162721 159163508 L1PA3long 6157 + 5052 5839 47593 787 chain 27911 chr3 198022430 + 159163508 159163810 L1PA3long 6157 + 5840 6142 93318 302 chain 53213 chr3 198022430 + 159169940 159170614 L1PA8 5853 - 6 672 56885 87 1 0 19 2 1 46 19 16 70 2 0 44 1 0 383 chain 3429 chr3 198022430 + 159190198 159190234 MIR 256 - 146 182 216579 36 chain 541553 chr3 198022430 + 159208911 159215048 L1PA4 6152 + 4 6152 2580 444 14 13 114 0 4 129 1 2 320 1 0 786 0 1 6 1 0 1360 1 0 506 2 0 1014 0 4 1289 1 8 148 chain 3901 chr3 198022430 + 159217373 159217428 MER5A 189 + 36 90 208825 50 1 0 4 chain 20076 chr3 198022430 + 159220277 159220513 L1PA4 6152 - 1 230 126895 19 7 0 210 chain 533069 chr3 198022430 + 159223267 159229398 L1PA5 6144 - 4 6144 3837 137 21 22 307 0 2 324 1 2 51 0 3 599 0 1 64 1 0 365 1 2 758 0 1 345 1 0 885 0 1 2271 chain 61793 chr3 198022430 + 159261000 159261697 L1PA3long 6157 - 0 689 51999 140 7 0 26 3 2 521 chain 30221 chr3 198022430 + 159262972 159263372 MLT2A1 477 + 0 395 84131 167 6 3 9 0 1 23 1 2 180 4 0 10 chain 115478 chr3 198022430 + 159264212 159265681 L1PA8 5853 - 6 1479 32615 87 1 0 19 2 1 12 1 0 11 9 0 9 12 20 9 1 0 71 2 0 44 1 0 49 0 1 415 0 3 68 3 0 17 1 3 17 0 4 404 5 10 199 chain 7794 chr3 198022430 + 159267424 159267523 MLT1B 390 + 291 390 172336 99 chain 16303 chr3 198022430 + 159273659 159273845 L1PA7 6471 + 6263 6449 136743 186 chain 71679 chr3 198022430 + 159273845 159274623 L1PA3long 6157 + 5285 6063 47613 778 chain 8293 chr3 198022430 + 159274623 159274716 L1PA3long 6157 + 6064 6157 169448 93 chain 495940 chr3 198022430 + 159286971 159293023 L1PA6 6164 - 12 6161 7073 352 1 0 254 0 1 141 1 0 63 23 49 300 1 0 623 0 4 81 1 2 103 0 4 95 0 1 34 0 3 27 0 3 224 0 1 82 0 3 499 0 4 12 1 0 87 8 12 230 6 10 256 0 3 136 0 4 45 0 4 61 10 5 107 0 1 237 1 0 132 0 4 664 0 3 5 3 0 253 0 4 71 0 1 30 0 17 234 6 5 47 7 9 97 0 1 35 57 63 76 0 2 233 chain 4119 chr3 198022430 + 159300253 159300301 Tigger1 2417 + 2183 2231 205667 48 chain 183992 chr3 198022430 + 159305260 159307384 L1PA5 6144 - 0 2134 20590 263 9 10 574 0 3 42 0 1 138 0 1 330 0 2 152 1 0 88 7 6 183 0 4 337 chain 48685 chr3 198022430 + 159309092 159309723 L1PA8 5853 + 5229 5853 59968 328 8 7 46 2 0 69 2 1 13 1 0 46 6 5 15 1 0 94 chain 91205 chr3 198022430 + 159313678 159314747 L1PA5 6144 + 5070 6144 39232 201 1 5 700 1 2 166 chain 26382 chr3 198022430 + 159329120 159329477 L1PA8 5853 + 5496 5846 98485 66 1 0 46 2 0 71 1 0 4 6 5 52 2 1 19 1 0 86 chain 21880 chr3 198022430 + 159344673 159344988 L1PA8 5853 - 6 317 120709 87 1 0 15 8 7 43 0 1 86 3 1 45 2 1 25 chain 22669 chr3 198022430 + 159348163 159348647 L1PB1 5432 + 5017 5422 117221 68 6 0 18 1 2 9 7 0 24 1 0 4 1 0 14 2 0 3 2 0 9 2 0 52 2 1 23 41 0 38 1 0 14 20 12 19 27 22 21 1 0 21 1 0 13 1 0 18 chain 51414 chr3 198022430 + 159370879 159371542 L1PA8 5853 + 5196 5853 58025 324 1 2 42 1 0 44 2 0 67 5 4 8 2 1 52 2 1 19 2 1 92 chain 5538 chr3 198022430 + 159390315 159390452 MER20 218 + 19 164 189680 15 6 3 38 33 41 9 1 4 35 chain 15285 chr3 198022430 + 159396459 159396811 THE1D 372 - 0 372 140523 25 16 22 75 69 84 51 39 41 27 3 0 47 chain 410609 chr3 198022430 + 159405397 159410450 L1PA7 6471 - 6 4942 9786 7 0 1 134 19 0 6 1 20 680 0 3 851 0 1 141 1 0 42 0 1 6 1 0 86 0 1 473 0 2 174 0 1 735 0 4 203 0 4 248 10 0 573 124 0 209 1 2 328 chain 10765 chr3 198022430 + 159409798 159409912 AluYb8 318 - 0 114 157132 114 chain 17635 chr3 198022430 + 159428994 159429178 AluYa5 310 + 126 310 133896 184 chain 525268 chr3 198022430 + 159432054 159438186 L1PA5 6144 + 0 6144 4663 103 0 5 90 5 0 377 5 6 588 9 0 258 0 1 154 0 1 731 5 17 348 0 1 70 0 1 89 0 6 311 0 3 10 1 0 753 1 0 1371 1 0 224 0 1 55 1 2 127 0 2 105 1 4 192 7 0 133 2 0 5 chain 22675 chr3 198022430 + 159473044 159473345 THE1B 368 - 65 368 117189 129 3 2 127 0 5 27 2 0 13 chain 121082 chr3 198022430 + 159473350 159474931 THE1B-int 1605 - 5 1605 30670 112 0 1 454 1 0 4 0 1 254 0 1 4 1 0 79 8 1 176 1 0 62 4 29 48 0 1 101 1 3 61 14 12 196 chain 5665 chr3 198022430 + 159494145 159494212 LTR12F 595 - 126 193 188432 67 chain 19018 chr3 198022430 + 159508208 159508488 AluSz 310 + 11 298 130070 30 2 8 86 22 21 119 0 2 21 chain 51082 chr3 198022430 + 159526780 159527386 L1PA6 6164 - 2 613 58265 121 0 1 38 2 0 305 0 6 140 chain 3344 chr3 198022430 + 159530059 159530097 L1MB7 1623 - 1416 1454 218151 38 chain 6042 chr3 198022430 + 159540406 159540484 MADE1 96 + 1 95 184872 28 0 16 50 chain 27160 chr3 198022430 + 159545332 159545620 AluYb8 318 + 20 308 95722 288 chain 7710 chr3 198022430 + 159637513 159637623 L1MB4 1306 + 750 859 172863 47 0 1 4 1 0 10 1 0 47 chain 11597 chr3 198022430 + 159648904 159649130 MER1B 344 - 8 248 153905 51 14 20 45 4 0 37 38 50 37 chain 24950 chr3 198022430 + 159651013 159651377 THE1B 368 - 0 368 105060 56 7 6 57 8 7 28 0 4 10 7 10 21 1 0 169 chain 114505 chr3 198022430 + 159651388 159652935 THE1B-int 1605 - 37 1605 32944 169 1 0 255 6 10 95 4 29 17 17 17 337 5 3 185 42 25 310 0 3 39 0 8 48 6 7 11 chain 4978 chr3 198022430 + 159653013 159653073 THE1B 368 - 76 135 195387 48 1 0 11 chain 11759 chr3 198022430 + 159653132 159653291 THE1B 368 - 199 368 153226 87 5 15 67 chain 89008 chr3 198022430 + 159657860 159658904 L1PA5 6144 + 5116 6143 40000 510 25 7 498 1 2 10 chain 5220 chr3 198022430 + 159666608 159666812 MLT1F1 559 + 4 220 192832 29 101 121 23 16 8 35 chain 4595 chr3 198022430 + 159666950 159667014 L1MC1 2226 + 1985 2047 199687 6 2 0 56 chain 9107 chr3 198022430 + 159679790 159679947 Tigger2b_Pri 1066 - 62 222 165039 13 6 0 63 7 6 36 0 5 6 3 8 23 chain 9196 chr3 198022430 + 159692537 159692662 MER85 139 + 2 139 164577 90 6 18 29 chain 6415 chr3 198022430 + 159714908 159714985 MSTD 398 - 249 326 181904 77 chain 23857 chr3 198022430 + 159741630 159741915 AluSp 311 + 9 294 111141 285 chain 23491 chr3 198022430 + 159748618 159748902 AluSc 308 - 24 308 113169 284 chain 26821 chr3 198022430 + 159778864 159779248 LTR12C 1709 + 691 1037 96908 146 1 0 167 43 6 27 chain 17890 chr3 198022430 + 159779973 159780259 AluSc8 310 + 17 291 133135 115 21 25 81 10 5 7 0 5 28 16 0 8 chain 79938 chr3 198022430 + 159798653 159799702 MER11C 1089 - 20 1086 43627 4 0 1 148 2 1 49 0 1 90 4 5 32 0 1 38 1 0 4 6 10 299 1 0 5 0 1 12 1 0 47 0 4 62 0 9 219 5 4 20 chain 30914 chr3 198022430 + 159834763 159835186 L1M1 2793 + 1332 1887 82662 82 1 0 5 8 144 237 3 0 87 chain 270559 chr3 198022430 + 159836419 159839865 L1PA8 5853 + 2429 5853 15160 459 2 0 46 9 13 226 0 18 291 0 1 8 14 15 118 49 50 12 4 6 302 25 0 60 0 4 108 2 0 767 1 0 77 2 0 77 0 1 306 33 0 170 1 0 44 2 0 70 12 10 48 8 24 93 chain 3593 chr3 198022430 + 159856125 159856163 L1PA8 5853 + 5570 5608 213771 38 chain 5827 chr3 198022430 + 159856165 159856234 L1PA8 5853 + 5608 5677 186882 69 chain 13680 chr3 198022430 + 159856237 159856413 L1PA8 5853 + 5679 5853 145671 14 1 0 47 2 1 9 0 1 9 1 0 93 chain 5218 chr3 198022430 + 159858817 159858877 MLT1A0 366 - 34 94 192847 60 chain 33050 chr3 198022430 + 159858948 159859378 MLT2A1 477 + 4 477 79140 165 4 1 9 0 1 23 0 1 181 21 65 27 chain 11992 chr3 198022430 + 159865844 159866073 L1PA17 2846 - 153 379 152236 6 0 1 37 1 0 17 45 48 51 1 0 24 1 0 7 4 0 35 chain 23764 chr3 198022430 + 159885619 159885902 AluSp 311 + 13 293 111681 12 3 0 268 chain 5312 chr3 198022430 + 159893936 159894001 MER63B 433 + 111 176 191909 65 chain 6066 chr3 198022430 + 159895791 159895972 MER6B 211 + 26 210 184697 28 92 95 61 chain 116745 chr3 198022430 + 159896049 159897357 SVA_D 2077 + 225 2060 32213 242 1 40 180 0 40 151 0 437 73 0 1 340 0 10 321 chain 3019 chr3 198022430 + 159913230 159913296 MIR 256 + 117 191 224631 21 0 1 9 16 23 20 chain 263948 chr3 198022430 + 159957794 159962234 L1PBa 3878 + 167 3793 15488 46 1 0 8 19 17 212 42 46 28 1 0 239 549 48 31 0 1 141 2 3 280 1 0 276 1 0 62 13 11 6 0 3 165 0 2 160 1 0 555 4 0 111 11 15 34 1 0 44 3 0 26 1 2 37 7 5 15 0 3 256 0 2 50 308 3 113 17 0 17 1 24 284 15 11 156 2 1 21 2 0 7 7 6 12 5 0 10 1 0 5 5 3 13 chain 39127 chr3 198022430 + 159958440 159958939 LTR10F 562 - 0 562 70565 62 0 4 231 23 0 4 5 0 11 0 87 163 chain 34271 chr3 198022430 + 159970068 159970666 MER4A1_ 611 - 4 611 77251 9 1 0 85 5 8 58 0 1 31 29 34 53 4 3 30 59 55 30 3 0 20 0 6 60 10 12 66 0 1 45 chain 132835 chr3 198022430 + 160039832 160041289 L1PA3long 6157 - 7 1464 27372 1457 chain 166586 chr3 198022430 + 160041289 160043129 L1PA3long 6157 + 2866 4706 22448 168 0 1 134 1 0 1537 chain 5047 chr3 198022430 + 160055915 160055984 L1M3f 2199 + 35 101 194657 47 3 0 19 chain 63851 chr3 198022430 + 160062136 160063084 L1MA2 4263 + 3168 4110 51077 126 0 1 45 3 5 205 17 16 17 7 3 76 1 0 49 0 3 79 19 16 115 2 3 24 10 14 93 7 0 47 1 0 5 chain 474177 chr3 198022430 + 160077163 160082797 L1PA6 6164 + 0 6162 7906 88 0 511 109 2 8 28 9 7 100 7 9 969 2 0 248 39 17 24 3 6 208 0 2 27 0 1 905 5 6 191 6 14 280 1 0 79 0 2 56 0 1 461 0 4 317 0 1 88 0 6 397 0 2 140 0 4 192 0 1 653 chain 59559 chr3 198022430 + 160107120 160107768 L1PA3long 6157 - 0 648 53076 648 chain 16990 chr3 198022430 + 160112000 160112220 MER30 238 - 0 233 135615 114 4 17 102 chain 21485 chr3 198022430 + 160115504 160115753 AluSp 311 - 7 256 122201 249 chain 16255 chr3 198022430 + 160157263 160157615 THE1B 368 + 0 368 137593 80 60 72 16 30 27 9 4 0 10 17 29 63 7 6 56 chain 23436 chr3 198022430 + 160178707 160179023 MER1A 529 + 209 519 113442 256 12 6 23 0 7 6 7 0 12 chain 23950 chr3 198022430 + 160181747 160182052 AluSx 319 + 3 308 110621 52 1 2 54 1 0 197 chain 14505 chr3 198022430 + 160189128 160189346 THE1C-int 1605 + 916 1598 142877 118 25 489 75 chain 24515 chr3 198022430 + 160208601 160208886 AluSg7 307 - 10 296 107475 170 0 1 115 chain 29360 chr3 198022430 + 160237300 160237614 AluYb9 318 + 0 313 87241 123 1 0 190 chain 25484 chr3 198022430 + 160247635 160247947 AluY 311 + 0 307 102297 77 6 0 55 1 2 173 chain 99782 chr3 198022430 + 160291024 160292296 LTR12C 1709 - 11 1709 36833 66 15 14 77 0 102 62 0 2 147 0 4 106 9 165 99 0 118 339 0 1 15 0 43 36 28 29 273 chain 26152 chr3 198022430 + 160302274 160302660 L1MA4 2864 + 33 421 99397 26 1 0 62 5 6 188 10 9 52 9 10 8 0 2 25 chain 124578 chr3 198022430 + 160306171 160308143 L1M1 2793 + 661 2620 29514 26 1 0 8 53 40 5 2 0 5 2 0 11 25 20 20 7 6 29 9 3 5 0 3 48 8 6 6 1 0 93 11 10 170 3 4 90 4 0 4 3 0 113 4 9 64 0 1 25 4 7 261 2 1 137 1 0 43 5 10 66 4 15 61 1 5 14 1 0 204 0 1 12 0 5 4 1 0 89 49 45 80 4 1 74 chain 11731 chr3 198022430 + 160311343 160311472 L1PA5 6144 + 6002 6131 153340 129 chain 28886 chr3 198022430 + 160321581 160321982 L1PA7 6471 - 5 426 89505 7 2 0 82 8 0 8 4 33 27 5 6 258 chain 46219 chr3 198022430 + 160347591 160348151 L1PA10 4194 + 3491 4060 61834 108 0 4 28 1 4 112 0 1 4 1 0 93 0 2 213 chain 4600 chr3 198022430 + 160350295 160350394 L1MA7 2200 + 1865 1963 199628 43 25 26 15 2 0 14 chain 26929 chr3 198022430 + 160356388 160356832 MLT2A2 560 + 0 560 96519 178 2 0 15 15 34 75 0 109 47 0 5 7 16 15 17 29 15 43 chain 92531 chr3 198022430 + 160372773 160374231 L1M1 2793 + 809 2258 38808 22 8 5 30 0 1 28 3 1 6 1 0 101 1 0 36 1 0 23 0 3 86 22 24 5 1 0 88 7 0 6 3 1 379 44 45 107 4 5 69 3 7 83 0 7 12 21 21 44 10 9 33 13 1 9 0 3 96 5 6 8 1 0 39 chain 87599 chr3 198022430 + 160430409 160431440 L1PA7 6471 + 5420 6453 40534 200 1 4 174 2 1 654 chain 6144 chr3 198022430 + 160436947 160437036 LTR54B 464 + 0 94 184042 55 5 10 29 chain 5539 chr3 198022430 + 160440255 160440333 MADE1 96 + 3 96 189668 43 4 19 31 chain 19087 chr3 198022430 + 160479459 160479807 THE1B 368 - 0 368 129855 125 38 45 22 1 0 53 28 27 29 8 23 44 chain 96026 chr3 198022430 + 160504691 160506159 L1PA15 4387 - 35 1461 37813 22 11 0 14 2 0 40 26 23 36 14 9 23 2 1 52 10 9 19 1 0 171 1 0 26 17 16 19 0 2 48 1 4 5 2 0 84 4 0 78 0 1 224 58 43 180 1 0 13 2 0 9 0 1 12 2 0 6 19 22 214 chain 14275 chr3 198022430 + 160512471 160512688 MER30 238 - 3 238 143632 38 3 0 39 1 5 24 7 25 39 1 0 65 chain 94613 chr3 198022430 + 160515994 160517406 Tigger1 2417 + 872 2383 38182 18 6 30 77 1 3 145 49 48 482 0 38 37 50 45 55 0 1 183 9 24 22 0 1 49 0 13 27 0 10 32 3 2 17 0 1 25 3 0 74 1 4 26 1 2 20 chain 15549 chr3 198022430 + 160532591 160532947 L1PB1 5432 + 5114 5430 139736 20 1 0 12 1 0 12 17 11 51 2 1 16 2 1 43 1 0 13 26 14 18 3 1 5 1 0 14 13 4 20 1 0 23 13 11 18 1 0 4 1 0 4 chain 19256 chr3 198022430 + 160561268 160561480 L1PA5 6144 - 12 224 129359 212 chain 24331 chr3 198022430 + 160561480 160561745 L1PA5 6144 + 5545 5810 108480 265 chain 313891 chr3 198022430 + 160605664 160609929 L1PA7 6471 + 2148 6455 12862 203 9 10 202 9 10 62 1 3 124 0 1 4 1 0 122 0 4 155 0 6 46 5 10 14 2 47 61 45 0 8 5 19 232 7 6 4 1 0 80 1 3 19 0 3 166 7 6 222 2 1 201 1 2 38 0 1 34 10 15 230 0 2 54 0 1 27 0 2 80 0 4 15 1 0 36 8 10 20 9 14 31 1 5 202 1 2 104 5 7 475 1 0 3 9 0 45 22 9 26 1 3 136 1 0 296 0 1 323 chain 4810 chr3 198022430 + 160624008 160624075 MLT1F2 592 - 2 68 197236 5 1 0 61 chain 66563 chr3 198022430 + 160632087 160632827 L1PA4 6152 - 9 749 49758 740 chain 118710 chr3 198022430 + 160632827 160634148 L1PA4 6152 + 4120 5441 31527 369 1 0 274 0 1 677 chain 28115 chr3 198022430 + 160657226 160657581 THE1A 353 + 0 353 92588 110 1 0 92 1 0 151 chain 131745 chr3 198022430 + 160657581 160659151 THE1A-int 1579 + 0 1574 27686 609 0 1 639 0 3 322 chain 13644 chr3 198022430 + 160659164 160659357 THE1A 353 + 9 202 145802 73 4 5 23 14 13 79 chain 11361 chr3 198022430 + 160659359 160659511 THE1A 353 + 202 353 154858 75 2 1 75 chain 10192 chr3 198022430 + 160676732 160676872 L1PB2 3958 + 3701 3838 159669 50 4 2 22 1 0 63 chain 19876 chr3 198022430 + 160688575 160688787 AluYf4 310 - 8 220 127570 212 chain 71902 chr3 198022430 + 160689997 160690782 L1PA4 6152 - 9 794 47522 785 chain 297035 chr3 198022430 + 160691665 160694901 L1PA2 6032 - 7 3244 13584 2905 0 1 331 chain 53628 chr3 198022430 + 160713754 160714560 L1PB1 5432 + 4642 5422 56602 452 11 11 9 1 0 21 11 9 14 5 1 9 2 0 52 2 1 15 1 0 45 5 4 10 1 0 5 22 11 15 3 1 5 1 0 12 2 0 26 1 0 23 0 5 6 1 0 18 chain 304829 chr3 198022430 + 160719628 160723051 L1PA3long 6157 - 1 3357 13214 3249 68 1 106 chain 14067 chr3 198022430 + 160725356 160725547 MER30 238 + 30 238 144328 68 8 19 36 0 6 79 chain 367647 chr3 198022430 + 160727805 160732013 L1PA5 6144 - 12 4205 11162 132 1 2 190 21 0 513 12 20 1932 0 1 193 6 0 823 0 1 10 1 2 374 chain 10618 chr3 198022430 + 160743407 160743578 MLT1A1 405 + 174 404 157740 12 0 2 18 24 82 47 1 0 69 chain 148801 chr3 198022430 + 160750859 160752646 L1PA7 6471 + 4689 6466 24781 166 0 1 291 8 7 466 2 1 82 1 0 93 0 2 516 18 8 144 chain 22108 chr3 198022430 + 160752648 160752898 L1PA7 6471 + 6086 6336 119746 250 chain 8517 chr3 198022430 + 160752905 160753008 L1PA7 6471 + 6367 6470 168208 103 chain 28037 chr3 198022430 + 160755739 160756040 AluYa5 310 + 0 300 92870 123 1 0 177 chain 60021 chr3 198022430 + 160758465 160759255 MER4E1 777 + 0 769 52812 25 2 0 148 0 1 4 1 0 7 1 0 311 16 0 39 28 15 181 0 11 27 chain 371296 chr3 198022430 + 160762355 160766876 L1PA5 6144 + 1925 6144 11048 698 2 3 522 4 0 28 313 0 1173 0 4 940 0 8 829 1 3 11 chain 7147 chr3 198022430 + 160767121 160767209 Tigger4a 237 + 53 141 176433 88 chain 50288 chr3 198022430 + 160781349 160781971 L1PA8 5853 + 5236 5853 58797 328 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 2 1 70 0 2 20 chain 5681 chr3 198022430 + 160808425 160808500 AluY 311 + 57 133 188289 61 2 0 5 0 3 7 chain 41771 chr3 198022430 + 160834095 160834750 L1MA1 4479 + 3482 4142 66938 37 2 0 17 6 7 41 0 1 44 9 21 63 2 1 25 2 0 16 1 0 46 0 1 24 1 0 19 2 0 17 0 4 81 1 0 5 3 0 117 11 12 25 8 6 30 chain 62430 chr3 198022430 + 160836782 160837638 THE1D-int 1627 + 805 1618 51709 645 55 1 113 9 20 34 chain 73157 chr3 198022430 + 160838626 160839548 L1PA7 6471 - 2029 2956 46800 336 0 7 263 0 1 42 13 9 79 1 0 3 1 0 81 0 2 7 0 1 96 chain 163443 chr3 198022430 + 160839548 160841636 L1PA7 6471 + 4442 6469 22886 162 0 1 25 27 0 21 4 4 19 0 4 518 0 2 104 0 2 153 0 1 90 1 0 24 1 0 27 1 0 22 0 3 73 1 3 211 27 3 70 18 0 324 1 3 146 6 0 12 chain 26437 chr3 198022430 + 160855925 160856234 AluSp 311 - 3 311 98279 134 1 0 174 chain 29270 chr3 198022430 + 160856660 160857026 L1PA6 6164 - 2 369 87689 146 7 0 7 0 7 155 0 1 51 chain 14637 chr3 198022430 + 160863075 160863649 MER41-int 2638 + 550 809 142469 26 16 19 53 12 11 19 6 5 13 316 0 113 chain 7823 chr3 198022430 + 160868204 160868486 LTR39 781 - 81 360 172174 33 175 172 74 chain 145925 chr3 198022430 + 160898526 160900425 MER4-int 2692 - 1 1953 25183 53 2 0 262 0 5 84 9 13 164 0 1 66 4 13 9 0 1 8 1 0 153 1 10 51 4 16 49 0 1 175 0 4 240 8 9 79 0 13 63 5 6 223 0 1 26 6 0 154 chain 37291 chr3 198022430 + 160904384 160904815 L1PA8A 6298 + 5860 6291 73094 431 chain 4559 chr3 198022430 + 160904857 160904911 MER21C 908 - 816 870 200117 54 chain 526817 chr3 198022430 + 160908113 160914057 L1PA5 6144 - 12 5957 4519 247 1 0 925 0 4 1455 0 1 330 1 0 169 0 1 694 1 0 1154 0 3 674 5 0 288 chain 36184 chr3 198022430 + 160917043 160917512 MER4A1 472 + 0 472 74653 346 1 2 52 3 5 67 chain 5428 chr3 198022430 + 160951610 160951790 Tigger4a 237 - 1 73 190730 60 108 0 12 chain 3269 chr3 198022430 + 160967515 160967939 Kanga2_a 737 + 203 580 219615 25 365 318 34 chain 41087 chr3 198022430 + 160981894 160982418 LTR12F 595 - 0 595 67781 117 0 6 257 5 69 42 0 1 103 chain 195634 chr3 198022430 + 160995698 160999268 L1PBa 3878 + 1136 3738 19532 392 9 1 85 3 0 8 0 2 45 0 2 42 297 0 237 4 5 504 7 6 314 0 1 17 0 5 192 692 17 29 11 10 15 6 7 74 0 4 72 3 0 87 0 5 401 2 1 22 chain 39285 chr3 198022430 + 161000000 161000529 MLT2A2 560 - 17 560 70345 128 4 15 222 23 24 101 0 2 51 chain 54060 chr3 198022430 + 161000529 161001213 L1PB1 5432 + 4220 4902 56318 408 4 0 62 0 1 14 4 5 192 chain 109595 chr3 198022430 + 161003650 161005189 L1PA15 4387 + 2846 4353 34300 122 0 1 197 11 4 137 0 1 504 2 0 17 13 9 26 1 5 19 4 1 43 1 0 33 12 8 131 1 0 26 1 0 55 1 0 17 4 0 15 1 0 39 17 14 31 1 2 11 3 1 14 5 0 24 chain 5898 chr3 198022430 + 161015039 161015115 LOR1b 457 - 341 415 186203 31 2 0 43 chain 15379 chr3 198022430 + 161035155 161035368 MER65A 464 + 254 464 140265 31 3 1 28 1 0 150 chain 28644 chr3 198022430 + 161050006 161050305 AluYg6 310 + 0 299 90545 299 chain 13578 chr3 198022430 + 161052449 161052704 L1MA3 4352 + 4106 4322 146064 7 3 0 123 4 0 24 2 0 18 6 5 5 1 0 23 28 0 11 chain 15465 chr3 198022430 + 161057733 161057996 L1PA17 2846 + 2440 2693 140001 62 4 0 26 6 5 55 19 16 25 1 0 21 1 0 43 chain 12194 chr3 198022430 + 161060214 161060439 LTR49 580 - 7 238 151447 103 44 41 42 1 0 17 1 0 4 0 11 13 chain 28671 chr3 198022430 + 161086214 161086513 AluYa5 310 - 11 310 90446 299 chain 23680 chr3 198022430 + 161095501 161095782 AluSp 311 + 11 292 112150 281 chain 182652 chr3 198022430 + 161114580 161116918 L1PA10 4194 + 1782 4161 20722 52 0 4 497 1 0 123 0 2 146 6 7 63 0 4 32 6 12 162 0 1 120 0 2 19 2 1 398 0 1 142 0 1 81 0 4 294 6 26 105 0 1 34 3 0 34 1 0 11 chain 90371 chr3 198022430 + 161134602 161135693 MER11C 1089 - 0 1089 39515 21 0 2 322 1 2 170 10 9 28 5 1 534 chain 9870 chr3 198022430 + 161138212 161138441 L1PB1 5432 - 2 208 161233 4 1 0 4 1 0 18 1 0 12 6 5 17 1 0 24 2 0 4 0 1 9 14 11 13 24 12 16 1 0 44 1 0 12 chain 3716 chr3 198022430 + 161138463 161138505 MER53 195 + 25 67 211691 42 chain 5296 chr3 198022430 + 161139659 161139811 L1MA8 2339 - 0 128 192051 40 64 42 24 2 0 22 chain 2988 chr3 198022430 + 161171740 161171779 MER57F 435 + 392 431 225295 39 chain 6125 chr3 198022430 + 161176127 161176205 L1MB1 2102 - 783 866 184227 59 0 5 19 chain 4641 chr3 198022430 + 161177765 161177820 MSTA-int 1630 + 1575 1630 199183 55 chain 3054 chr3 198022430 + 161185583 161185723 L1ME1 1623 + 1109 1250 223931 20 87 88 33 chain 23223 chr3 198022430 + 161194507 161194814 AluSp 311 - 7 311 114577 23 5 4 102 1 0 47 1 0 128 chain 59153 chr3 198022430 + 161230219 161230984 L1PA6 6164 - 2 804 53301 151 19 20 23 18 49 412 0 1 23 12 16 107 chain 43642 chr3 198022430 + 161230984 161231539 L1PA6 6164 + 4804 5349 64357 116 3 1 57 7 0 7 0 7 18 4 1 301 5 0 37 chain 7112 chr3 198022430 + 161244298 161244387 L1P3 4156 - 49 146 176664 62 0 8 27 chain 4278 chr3 198022430 + 161255555 161255638 L1MD2 1676 - 426 513 203488 22 21 25 40 chain 84644 chr3 198022430 + 161262311 161263278 L1PA4 6152 - 16 982 41661 97 0 1 54 2 1 4 0 1 140 1 0 25 0 1 589 2 0 53 chain 21672 chr3 198022430 + 161309371 161309733 THE1C 375 - 0 375 121493 26 1 0 135 29 31 6 0 1 55 1 12 18 14 0 8 11 25 58 chain 30854 chr3 198022430 + 161321243 161321630 L1PA5 6144 - 0 358 82761 148 22 0 12 7 0 198 chain 15715 chr3 198022430 + 161321630 161321804 L1PA5 6144 + 5476 5650 139223 174 chain 6637 chr3 198022430 + 161329671 161329753 THE1C 375 + 293 375 180190 82 chain 23947 chr3 198022430 + 161356921 161357244 L1PA8 5853 - 0 316 110640 93 1 0 15 1 0 4 2 1 47 1 0 83 2 0 46 1 0 27 chain 42009 chr3 198022430 + 161364907 161365475 PRIMA4_LTR 623 - 0 623 66610 195 0 2 25 0 60 82 4 3 68 4 0 95 1 0 57 1 0 36 chain 209497 chr3 198022430 + 161371550 161374353 L1PA8 5853 - 0 4040 18524 93 1 0 19 2 1 45 6 5 11 2 1 56 9 18 40 1 0 89 0 1 43 20 1218 60 0 1 277 0 1 480 2 0 95 0 2 82 0 1 276 0 4 88 0 5 11 0 3 125 0 2 19 0 1 29 62 64 102 0 4 89 5 13 91 3 6 90 1 2 29 3 0 209 0 1 138 chain 4883 chr3 198022430 + 161382886 161382948 L1MA4A 3247 - 200 262 196450 62 chain 44125 chr3 198022430 + 161399462 161400015 LTR10F 562 - 0 562 64045 56 1 2 253 0 1 19 0 3 39 5 9 180 chain 107038 chr3 198022430 + 161419965 161421634 L1MA1 4479 + 2508 4138 34958 162 7 6 95 3 1 32 8 7 61 2 0 32 2 0 54 1 0 27 2 0 172 2 0 21 12 7 66 1 0 12 14 9 116 4 2 130 3 2 120 4 5 63 8 7 22 2 0 16 1 0 5 2 1 8 1 4 53 1 0 19 2 0 14 1 0 87 1 0 6 2 0 7 10 9 110 1 0 19 14 12 29 chain 513787 chr3 198022430 + 161424594 161430979 L1PA7 6471 + 15 6468 5802 348 0 1 38 12 12 126 2 7 159 15 24 149 0 1 248 0 1 210 6 16 378 0 3 143 0 8 752 1 2 65 0 4 373 0 1 402 0 1 42 3 1 19 0 8 1011 1 2 197 0 1 586 2 1 268 0 5 72 0 2 143 1 0 26 0 1 250 5 6 110 0 8 222 chain 284681 chr3 198022430 + 161441367 161445156 HERVH-int 3825 - 0 3825 14372 14 0 1 210 0 2 260 8 218 39 9 11 948 8 36 370 4 31 215 1 0 37 10 1 40 0 1 259 0 2 351 1 0 50 1 0 4 46 5 21 2 1 42 1 0 16 57 10 12 1 0 14 7 1 13 4 0 10 1 0 9 2 1 24 0 1 4 1 0 6 121 0 202 1 0 333 chain 5069 chr3 198022430 + 161444505 161444564 HERVH-int 3825 - 3295 3354 194443 59 chain 41886 chr3 198022430 + 161446956 161447523 L1PA8 5853 + 5293 5853 66781 271 1 0 44 2 0 70 2 1 14 13 10 5 0 2 30 2 1 19 4 3 90 chain 12234 chr3 198022430 + 161452775 161452911 L1PA4 6152 - 11 147 151285 136 chain 11205 chr3 198022430 + 161452915 161453041 L1PA4 6152 - 19 145 155399 126 chain 66312 chr3 198022430 + 161453041 161453910 HSMAR1 1287 + 422 1287 49941 124 15 11 7 0 2 178 3 1 542 chain 84636 chr3 198022430 + 161455599 161456657 L1PA7 6471 - 4 1060 41666 141 13 6 374 0 1 176 2 1 146 1 4 114 0 2 91 chain 85455 chr3 198022430 + 161461125 161462170 MER11C 1089 + 0 1074 41359 259 0 3 53 5 22 253 8 9 175 0 8 292 chain 29038 chr3 198022430 + 161462212 161462579 MLT2A1 477 + 16 383 88817 154 4 1 7 0 1 25 0 1 122 0 1 55 chain 267178 chr3 198022430 + 161466307 161469257 L1PA3long 6157 - 2 2948 15333 1540 4 0 1406 chain 21537 chr3 198022430 + 161493856 161494231 THE1A 353 + 0 353 122015 13 2 0 32 9 10 41 39 38 56 0 1 70 22 1 91 chain 5380 chr3 198022430 + 161502162 161502366 MLT2B3 573 + 68 264 191204 59 122 114 23 chain 92899 chr3 198022430 + 161516157 161517216 L1PA5 6144 + 5081 6143 38688 226 0 1 213 0 2 458 1 6 6 1 0 5 4 0 145 chain 12370 chr3 198022430 + 161517915 161518082 THE1B-int 1605 - 0 168 150756 58 5 6 104 chain 21933 chr3 198022430 + 161519778 161520122 THE1B 368 - 0 368 120486 125 35 45 28 1 0 96 15 30 44 chain 3940 chr3 198022430 + 161547769 161547949 MER20 218 + 37 187 208265 46 118 88 16 chain 14836 chr3 198022430 + 161557607 161557958 L1PB1 5432 - 8 327 141821 4 1 0 29 1 0 21 1 0 20 33 28 9 6 0 10 3 0 7 3 0 16 2 1 42 1 0 16 2 1 50 3 1 11 16 11 13 2 1 19 1 0 9 chain 39826 chr3 198022430 + 161569086 161570480 HERV30-int 1034 - 109 897 69586 12 41 12 16 35 0 16 84 1 23 34 21 20 45 1 13 51 4 27 52 0 24 39 0 49 205 76 18 2 0 6 4 1 13 1 0 5 46 12 29 20 5 91 2 1 75 13 1 41 5 0 51 13 0 5 20 0 56 1 0 39 6 0 14 22 0 10 chain 47859 chr3 198022430 + 161571113 161571826 LTR30 714 - 0 714 60584 19 2 1 12 0 1 57 15 17 46 90 89 472 chain 17374 chr3 198022430 + 161596664 161596918 L1PA16 3655 + 2562 2817 134585 77 21 22 156 chain 61664 chr3 198022430 + 161625236 161625893 L1HS 6032 + 5375 6032 52050 657 chain 228279 chr3 198022430 + 161649605 161652163 L1PA4 6152 - 11 2567 17399 7 1 0 923 2 1 1625 chain 9069 chr3 198022430 + 161654788 161654901 LTR2 463 - 0 113 165218 113 chain 103330 chr3 198022430 + 161654903 161656440 HERVE_a-int 7009 + 5539 7008 35916 4 1 0 64 1 0 66 3 1 20 1 0 11 1 0 259 2 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 12 5 4 76 2 0 138 1 0 42 1 0 31 8 7 4 1 0 16 1 0 5 2 0 7 1 0 36 1 0 22 5 4 43 1 0 4 2 1 26 7 5 56 8 0 9 4 0 26 3 0 54 3 1 26 1 0 31 1 0 6 17 14 24 2 0 31 7 5 15 32 24 25 2 0 6 2 1 10 chain 38317 chr3 198022430 + 161656446 161656905 LTR2 463 + 0 463 71688 19 0 1 38 1 4 401 chain 37826 chr3 198022430 + 161661600 161662087 LTR2 463 - 0 463 72370 82 0 1 138 28 0 110 0 3 129 chain 23932 chr3 198022430 + 161662688 161662972 AluSp 311 + 10 293 110739 10 1 0 273 chain 5846 chr3 198022430 + 161663872 161663936 L1MB7 1623 + 193 257 186719 64 chain 29168 chr3 198022430 + 161672356 161672662 AluYa5 310 + 1 307 88209 306 chain 34379 chr3 198022430 + 161762322 161762769 LTR2 463 - 0 463 77093 149 0 13 68 23 23 80 0 3 127 chain 417435 chr3 198022430 + 161762769 161768159 Harlequin-int 5206 - 0 5081 9592 647 1 0 235 19 7 449 0 3 171 8 6 5 0 1 102 1 0 5 1 2 453 0 1 541 0 1 403 0 11 854 309 0 154 4 9 288 1 0 11 0 1 164 1 0 200 3 0 119 0 5 49 15 15 58 12 3 97 0 1 10 chain 23119 chr3 198022430 + 161766677 161766960 AluY 311 + 8 296 115042 81 0 4 39 0 1 163 chain 37610 chr3 198022430 + 161770053 161770513 LTR2 463 - 0 463 72671 329 0 3 131 chain 14830 chr3 198022430 + 161785570 161785751 L1PREC2 3366 + 1786 1967 141843 181 chain 55192 chr3 198022430 + 161809980 161810665 L1PA8 5853 - 0 679 55588 90 2 1 21 2 1 48 1 0 10 1 0 74 2 0 44 1 0 298 1 2 90 chain 9409 chr3 198022430 + 161864805 161864929 L1MA5 2750 - 168 290 163506 18 1 0 37 1 0 67 chain 26827 chr3 198022430 + 161871220 161871638 LTR7B 505 - 12 505 96883 42 11 10 54 0 1 24 1 0 31 6 7 44 10 12 12 1 0 6 0 25 12 0 38 11 4 5 41 0 10 108 chain 229960 chr3 198022430 + 161873408 161876498 HERVH-int 3825 - 0 3340 17309 89 1 4 47 0 2 624 67 68 145 0 1 263 0 1 345 19 12 129 4 9 285 21 22 202 5 0 107 1 0 40 9 0 204 15 0 183 12 16 207 30 298 6 0 1 30 chain 281387 chr3 198022430 + 161904336 161907573 L1PA4 6152 - 0 3235 14571 13 0 3 26 0 9 793 22 15 888 1 0 863 8 2 253 0 1 77 1 0 292 chain 108609 chr3 198022430 + 161907827 161909343 THE1B-int 1605 + 16 1594 34536 32 2 1 126 0 1 5 4 36 215 1 27 229 8 9 56 46 50 215 6 8 110 0 2 92 0 1 213 22 16 134 chain 90942 chr3 198022430 + 161940134 161941192 MER11C 1089 + 0 1073 39313 256 0 19 57 4 0 309 0 1 326 2 1 104 chain 312772 chr3 198022430 + 161961937 161965495 L1PA5 6144 - 12 3587 12899 327 1 0 218 0 1 385 0 7 96 0 1 1452 0 10 454 1 0 624 chain 58639 chr3 198022430 + 161965495 161966217 L1P2 5180 + 1063 1784 53369 285 1 0 436 chain 4840 chr3 198022430 + 161966217 161966272 MER4A1 472 + 417 472 196883 55 chain 12563 chr3 198022430 + 161969628 161969765 L1PA3long 6157 + 6020 6157 149996 137 chain 99651 chr3 198022430 + 162000985 162002082 L1PA3long 6157 - 2 1105 36869 452 0 6 645 chain 72388 chr3 198022430 + 162002082 162002879 L1PA3long 6157 + 4252 5050 47233 62 0 1 735 chain 29758 chr3 198022430 + 162025587 162025900 AluYb8 318 - 5 318 85619 313 chain 366057 chr3 198022430 + 162041177 162045513 HERV17-int 4347 + 12 4347 11205 15 1 0 50 2 1 34 2 0 27 1 0 156 5 0 382 6 7 485 0 3 182 2 0 42 0 1 47 28 24 411 3 10 882 0 1 521 0 1 5 0 1 1047 chain 26165 chr3 198022430 + 162045827 162046156 LTR17 781 + 0 325 99346 30 0 4 245 0 2 18 10 0 26 chain 6652 chr3 198022430 + 162054753 162054895 LTR12 884 - 507 673 180069 11 2 1 21 0 25 27 1 26 13 26 1 41 chain 4719 chr3 198022430 + 162076817 162077007 L1MA8 2339 + 2051 2202 198286 35 68 38 14 25 25 30 9 0 9 chain 37891 chr3 198022430 + 162091497 162091976 MER9a1 513 + 0 513 72295 19 1 0 134 1 2 89 1 23 37 0 1 28 0 2 67 0 9 102 chain 262909 chr3 198022430 + 162096841 162099733 L1PA2 6032 - 1 2892 15539 859 1 0 2032 chain 161649 chr3 198022430 + 162099733 162101519 L1HS 6032 + 1350 3139 23105 710 0 2 901 0 1 175 chain 552717 chr3 198022430 + 162123654 162129681 L1PA2 6032 - 2 6032 1108 865 0 1 694 0 1 759 1 0 2422 1 0 1221 1 4 63 chain 3390 chr3 198022430 + 162150383 162150456 MADE1 96 + 0 89 217282 19 19 36 4 1 0 30 chain 101050 chr3 198022430 + 162163271 162164472 L1PA5 6144 - 0 1196 36500 337 1 0 430 3 2 272 4 2 129 1 0 24 chain 248834 chr3 198022430 + 162165503 162168525 L1PA7 6471 - 39 3083 16320 343 0 1 464 0 3 254 1 0 4 3 5 379 1 0 346 0 13 782 2 3 287 7 11 149 chain 185935 chr3 198022430 + 162173520 162175589 L1PA3long 6157 + 4088 6157 20417 1070 0 1 53 6 5 786 6 0 6 0 6 142 chain 35819 chr3 198022430 + 162193614 162194083 L1P3 4156 - 1148 1619 75108 373 3 4 58 0 1 35 chain 205567 chr3 198022430 + 162194107 162196844 L1PA8A 6298 + 3541 6291 18819 79 4 7 68 3 4 172 0 2 389 16 27 152 0 1 455 0 1 4 1 0 60 22 0 119 4 7 196 0 9 167 4 0 29 7 9 387 0 1 27 0 1 45 1 0 17 0 2 285 0 4 24 chain 28315 chr3 198022430 + 162197006 162197496 L1MA3 4352 - 3840 4330 91884 22 66 70 114 2 0 123 0 2 5 4 1 46 19 19 73 1 0 15 chain 67559 chr3 198022430 + 162206497 162207250 L1PA4 6152 + 5397 6151 49414 81 0 1 672 chain 3076 chr3 198022430 + 162217471 162217507 MER2 342 - 292 328 223380 36 chain 79773 chr3 198022430 + 162220115 162221105 L1P3 4156 + 3118 4114 43696 97 0 1 304 1 2 20 1 5 21 0 3 63 1 0 472 2 0 8 chain 11578 chr3 198022430 + 162271938 162272082 LTR8 732 - 0 144 153988 144 chain 49133 chr3 198022430 + 162292214 162292799 LTR12_ 688 + 0 688 59647 353 0 103 232 chain 240001 chr3 198022430 + 162292820 162295888 HERV9-int 5642 + 0 4812 16779 177 0 1 215 0 1 8 0 9 38 4 5 258 0 4 79 1 0 291 79 0 23 9 6 520 0 2 378 5 6 566 0 2 251 0 1795 58 5 15 84 7 8 12 chain 26161 chr3 198022430 + 162316332 162316734 LTR14B 630 + 8 630 99364 31 0 29 6 0 7 10 5 129 54 6 52 18 7 18 64 2 1 104 1 2 9 0 3 85 chain 32602 chr3 198022430 + 162317942 162318351 LTR12C 1709 + 1295 1702 79845 323 19 17 67 chain 24851 chr3 198022430 + 162351533 162351822 AluY 311 + 5 295 105617 127 0 1 162 chain 246915 chr3 198022430 + 162353600 162356878 HERVL-int 5654 - 2368 5653 16400 454 11 22 119 0 1 146 0 1 156 0 3 99 1 0 359 0 1 685 3 0 292 0 3 6 5 1 289 3 0 90 8 5 102 102 102 162 0 1 186 chain 112130 chr3 198022430 + 162357676 162359117 LTR12C 1709 + 0 1709 33631 260 1 2 201 9 8 177 0 278 186 1 0 5 3 1 106 11 4 9 0 1 286 2 3 26 6 5 54 14 13 84 chain 119350 chr3 198022430 + 162364639 162366177 THE1A-int 1579 + 15 1571 31281 414 0 1 43 5 7 178 0 1 5 2 1 164 9 8 138 0 8 181 8 16 391 chain 3207 chr3 198022430 + 162420074 162420109 LTR12C 1709 - 991 1026 220812 35 chain 29973 chr3 198022430 + 162420152 162420623 LTR12C 1709 - 506 940 84895 43 83 48 275 1 0 51 1 0 17 chain 3172 chr3 198022430 + 162420202 162420278 LTR12C 1709 - 800 1035 178627 26 41 200 9 chain 13545 chr3 198022430 + 162426421 162426566 L1PA2 6032 - 13 158 146187 145 chain 116011 chr3 198022430 + 162427325 162428862 LTR12C 1709 - 0 1709 32452 84 5 4 393 20 13 8 24 0 19 0 207 144 1 0 363 17 15 459 chain 279427 chr3 198022430 + 162430698 162434423 HERVH-int 3825 + 0 3825 14665 281 0 2 50 1 0 32 14 15 93 15 17 42 2 1 37 12 160 32 7 7 11 58 0 122 0 1 283 8 1 39 19 4 107 0 14 79 9 0 40 1 0 309 0 1 220 0 4 41 71 75 245 25 29 14 0 1 5 5 4 92 1 0 121 1 2 27 0 3 210 0 1 512 0 3 196 0 4 236 chain 27407 chr3 198022430 + 162435646 162436038 LTR7 482 + 0 474 94942 100 4 49 81 0 31 13 12 6 34 0 10 41 1 2 26 0 1 80 chain 27689 chr3 198022430 + 162440613 162441041 LTR7 482 - 8 482 94081 41 12 14 32 26 0 94 0 31 34 3 4 109 8 46 69 chain 236875 chr3 198022430 + 162441875 162444991 HERVH-int 3825 - 209 3207 16934 16 0 2 149 1 4 6 3 0 98 0 7 274 224 86 90 0 4 807 1 2 67 0 2 6 0 2 308 0 5 256 3 1 645 0 1 13 0 2 6 0 1 54 1 0 46 1 0 25 3 0 13 chain 6862 chr3 198022430 + 162445165 162445244 L1PA7 6471 - 1 80 178483 79 chain 14795 chr3 198022430 + 162448281 162448453 L1PA8A 6298 - 571 743 141946 172 chain 11034 chr3 198022430 + 162448833 162449162 L1PB1 5432 - 10 318 156074 15 4 3 12 1 0 12 0 1 9 1 0 24 31 26 7 9 0 17 1 0 16 1 0 4 13 20 18 20 18 48 22 16 12 2 1 9 1 0 20 chain 5068 chr3 198022430 + 162454257 162454321 MLT1E1A 663 + 430 494 194449 64 chain 22381 chr3 198022430 + 162475956 162476223 AluY 311 + 38 306 118577 92 1 2 174 chain 7065 chr3 198022430 + 162500709 162500797 L1MB3 1562 + 1255 1343 176976 88 chain 23879 chr3 198022430 + 162545192 162545558 THE1C 375 - 0 373 111032 134 51 56 159 1 3 21 chain 93393 chr3 198022430 + 162550391 162551590 L1PA8A 6298 + 5070 6267 38536 96 1 2 4 1 0 297 5 6 17 2 0 81 3 0 90 0 2 208 0 2 308 1 8 56 10 1 19 chain 17175 chr3 198022430 + 162561995 162562250 LTR12C 1709 - 530 832 135096 22 1 48 17 15 0 7 2 17 191 chain 29579 chr3 198022430 + 162573063 162573430 L1PA7 6471 + 6089 6456 86280 367 chain 384954 chr3 198022430 + 162585595 162590332 L1P2 5180 + 2 4688 10609 148 2 1 47 6 5 44 1 0 268 1 0 158 1 2 112 1 0 6 1 0 455 1 0 118 0 5 165 17 0 147 0 2 52 0 3 121 0 1 98 6 0 88 4 0 484 0 1 681 10 14 32 0 6 424 4 0 284 0 3 101 29 2 281 1 0 274 11 0 53 chain 20341 chr3 198022430 + 162616013 162616260 AluSp 311 + 64 311 126098 247 chain 8519 chr3 198022430 + 162618716 162618820 L1PA5 6144 + 6040 6144 168195 104 chain 10641 chr3 198022430 + 162639594 162639711 L1PA4 6152 + 6026 6143 157646 117 chain 29897 chr3 198022430 + 162643896 162644233 L1PA4 6152 + 5813 6151 85111 188 3 4 146 chain 52037 chr3 198022430 + 162660992 162661568 L1PA3long 6157 - 0 576 57601 576 chain 217263 chr3 198022430 + 162679110 162681645 L1PA5 6144 + 3617 6135 18043 261 0 1 931 0 1 181 0 1 42 26 1 261 0 4 121 0 1 712 chain 287985 chr3 198022430 + 162684102 162687805 L1PA7 6471 + 2756 6462 14159 58 10 1 626 0 5 76 4 1 106 3 0 72 2 3 109 0 4 184 3 1 471 15 15 34 0 2 149 4 5 749 8 10 46 0 3 135 1 0 13 0 1 68 0 1 433 15 14 147 19 20 85 0 1 58 chain 42053 chr3 198022430 + 162694194 162694670 L1PA5 6144 - 0 476 66551 476 chain 114086 chr3 198022430 + 162699384 162700806 L1PA7 6471 - 4 1416 33079 62 4 0 27 4 5 50 15 14 682 1 0 6 1 0 268 4 0 298 chain 101383 chr3 198022430 + 162704956 162706268 LTR12C 1709 + 0 1709 36425 211 6 7 21 0 1 49 8 0 49 0 43 83 0 1 4 7 0 135 5 6 39 0 2 101 0 366 106 11 4 78 0 6 91 1 0 215 8 7 84 chain 7526 chr3 198022430 + 162711770 162711943 L1MA3 4352 - 44 215 173997 17 11 9 24 10 8 15 9 6 22 8 10 26 0 3 31 chain 149011 chr3 198022430 + 162722245 162723891 L1PA3long 6157 + 4501 6157 24750 69 0 1 27 0 9 1550 chain 5639 chr3 198022430 + 162752488 162752554 MLT1B 390 - 324 390 188666 66 chain 18113 chr3 198022430 + 162797351 162797627 L1PA7 6471 - 3419 3682 132560 39 0 4 79 0 1 24 36 18 98 chain 240090 chr3 198022430 + 162797637 162800842 L1PA7 6471 + 3057 6464 16769 44 0 4 264 0 196 859 1 0 150 1 0 4 10 11 401 4 12 12 0 1 132 2 1 129 6 13 8 7 0 22 0 1 176 3 7 156 11 14 24 0 2 3 0 1 71 1 2 27 0 1 58 0 1 275 1 0 34 0 1 25 19 0 61 66 66 138 chain 5650 chr3 198022430 + 162809711 162809780 L1PA8 5853 - 0 69 188562 69 chain 79824 chr3 198022430 + 162812476 162813354 L1PA3long 6157 - 1 882 43673 820 1 4 57 chain 41084 chr3 198022430 + 162830200 162830710 L1PA8A 6298 - 60 573 67788 49 3 6 458 chain 5572 chr3 198022430 + 162839260 162839325 MER41B 635 - 88 153 189354 65 chain 38829 chr3 198022430 + 162840254 162840694 L1PA4 6152 + 5703 6143 70975 440 chain 27074 chr3 198022430 + 162842442 162842787 THE1B-int 1605 - 7 352 96025 121 0 5 11 5 0 208 chain 34716 chr3 198022430 + 162847007 162847424 LTR3 431 - 7 425 76602 173 0 1 244 chain 9841 chr3 198022430 + 162853355 162853503 L1PA8 5853 + 5707 5853 161389 33 2 1 10 11 10 92 chain 10047 chr3 198022430 + 162863370 162863499 L1PB 1623 - 170 298 160335 7 1 0 121 chain 386233 chr3 198022430 + 162864270 162868567 L1PA3long 6157 - 0 4308 10567 313 1 0 308 0 2 82 1 2 136 0 4 675 1 0 226 0 1 1265 0 5 1289 chain 90023 chr3 198022430 + 162868567 162869568 L1PA3long 6157 + 849 1851 39406 400 1 0 316 0 2 284 chain 3098 chr3 198022430 + 162876496 162876536 L1MD3 1191 + 923 963 222938 40 chain 107354 chr3 198022430 + 162909006 162910197 L1PA3long 6157 - 5 1195 34876 142 4 2 290 0 1 755 chain 89750 chr3 198022430 + 162947390 162948539 L1PA8 5853 - 1370 2525 39740 101 1 10 32 4 0 636 0 3 47 1 0 61 0 2 5 3 0 258 chain 102957 chr3 198022430 + 162948553 162949910 L1PA8 5853 + 4501 5853 36002 28 2 0 143 1 0 312 0 4 21 2 0 47 0 1 28 0 2 475 1 0 46 2 0 69 24 22 41 3 2 18 1 0 93 chain 60359 chr3 198022430 + 162952510 162953305 L1PA7 6471 + 5658 6459 52651 151 0 3 16 1 0 145 4 5 245 5 7 21 0 1 56 1 9 11 8 0 131 chain 564161 chr3 198022430 + 162954729 162960750 L1HS 6032 + 6 6028 234 5350 0 1 671 chain 109274 chr3 198022430 + 162968414 162969809 L1PA7 6471 - 1545 2958 34378 121 0 2 73 2 0 56 8 16 75 1 10 474 1 2 171 0 1 45 2 1 366 chain 111426 chr3 198022430 + 162969809 162971298 L1PA7 6471 + 4934 6466 33829 12 0 3 6 5 6 547 0 1 100 6 7 5 2 0 76 8 6 104 2 1 165 0 1 78 0 1 13 6 9 62 2 1 87 15 59 174 6 0 8 chain 3362 chr3 198022430 + 162975384 162975421 MLT1G1-int 1178 - 752 789 217848 37 chain 20525 chr3 198022430 + 162987512 162987811 AluSp 311 + 9 311 125555 33 6 0 7 0 6 73 2 0 21 1 7 102 10 11 37 2 0 5 chain 48580 chr3 198022430 + 163000977 163001565 LTR14C 587 - 0 587 60050 213 1 0 374 chain 314830 chr3 198022430 + 163016395 163020493 L1PA7 6471 + 2306 6467 12816 103 0 49 61 0 2 111 9 0 10 10 6 55 0 1 398 0 1 25 2 0 34 8 9 68 6 10 51 0 20 684 5 6 36 1 2 70 3 4 99 5 3 22 1 0 305 1 0 273 1 2 129 1 0 181 0 1 341 0 1 141 2 1 273 0 2 370 0 1 191 3 0 9 chain 28948 chr3 198022430 + 163029228 163029539 AluYb8 318 + 0 311 89231 311 chain 222193 chr3 198022430 + 163034951 163037481 L1PA4 6152 - 0 2580 17747 1778 0 50 752 chain 90933 chr3 198022430 + 163037481 163038507 L1PA4 6152 + 2543 3572 39257 79 0 3 290 0 1 260 2 1 395 chain 9502 chr3 198022430 + 163042656 163042758 L1PA2 6032 + 5927 6029 163065 102 chain 8146 chr3 198022430 + 163046959 163047106 MER61A 341 + 198 341 170254 22 1 0 43 36 33 45 chain 7682 chr3 198022430 + 163060640 163060733 L1PA7 6471 + 6358 6451 173033 93 chain 473249 chr3 198022430 + 163069536 163074996 L1PA5 6144 - 1 5480 7941 158 0 1 99 1 0 511 0 4 898 4 12 1091 0 4 114 0 1 54 8 7 30 0 1 81 0 1 419 1 0 217 0 2 128 1 0 493 2 1 586 0 1 74 0 1 490 chain 16277 chr3 198022430 + 163087798 163088168 THE1C 375 - 0 375 137535 26 1 0 96 149 155 98 chain 30935 chr3 198022430 + 163110513 163110861 L1PA4 6152 + 5479 5830 82623 343 0 3 5 chain 87803 chr3 198022430 + 163114940 163115944 L1PA4 6152 - 1 1004 40448 151 1 2 7 1 0 172 1 2 219 1 0 301 1 0 149 chain 19991 chr3 198022430 + 163120518 163120768 L1PREC2 3366 - 2195 2445 127168 250 chain 24373 chr3 198022430 + 163122218 163122494 L1PA2 6032 - 5 289 108236 28 0 1 112 1 8 135 chain 16392 chr3 198022430 + 163126209 163126541 MSTA 426 + 14 380 137229 83 5 16 14 25 32 45 6 4 17 1 3 12 7 4 54 34 53 29 chain 99730 chr3 198022430 + 163141379 163142722 HERVL-int 5654 - 0 1342 36849 87 6 1 6 0 5 8 13 21 56 3 4 47 0 3 35 18 0 471 6 9 241 0 1 180 0 1 166 chain 495543 chr3 198022430 + 163147495 163153019 L1PA3long 6157 + 603 6156 7095 472 0 1 113 0 3 1134 7 26 76 0 1 1935 0 2 274 0 1 298 0 1 884 0 1 331 chain 60728 chr3 198022430 + 163184971 163185645 L1PA3long 6157 - 0 674 52457 674 chain 67057 chr3 198022430 + 163185645 163186390 L1PA3long 6157 + 4738 5481 49631 358 1 0 211 1 0 174 chain 111279 chr3 198022430 + 163188631 163189856 L1PA2 6032 - 2 1244 33868 96 0 4 1010 0 13 119 chain 27712 chr3 198022430 + 163189856 163190156 L1PA2 6032 + 4485 4785 92702 300 chain 36498 chr3 198022430 + 163190224 163190728 L1P3 4156 - 22 530 74240 21 1 0 6 9 7 5 1 0 94 3 10 70 0 1 294 chain 22183 chr3 198022430 + 163190733 163191063 L1PA8 5853 + 5529 5852 119430 34 2 1 44 2 0 66 18 16 54 1 0 16 1 0 92 chain 195102 chr3 198022430 + 163201753 163203907 L1PA3long 6157 + 4001 6157 19574 1117 3 4 184 0 1 850 chain 11418 chr3 198022430 + 163210124 163210309 L1MA2 4263 - 948 1149 154608 70 37 53 78 chain 110067 chr3 198022430 + 163216638 163218070 LTR12C 1709 + 0 1709 34200 21 0 9 232 0 1 40 0 1 160 6 4 21 4 3 26 0 1 135 0 278 179 1 0 5 10 8 100 11 4 35 0 2 293 1 0 63 12 11 77 chain 2852 chr3 198022430 + 163229033 163229069 LTR41B 718 + 0 36 227840 36 chain 9794 chr3 198022430 + 163239638 163239766 MER85 139 - 0 139 161627 28 4 15 96 chain 9103 chr3 198022430 + 163249046 163249177 L1PA8 5853 + 5723 5853 165055 17 2 1 19 2 1 23 0 1 68 chain 114008 chr3 198022430 + 163269297 163270673 LTR12C 1709 - 1 1709 33092 81 1 0 109 0 1 289 0 4 103 1 48 131 4 283 53 0 1 338 0 1 266 chain 24051 chr3 198022430 + 163288993 163289338 THE1A 353 + 0 341 110037 61 0 2 5 2 0 15 1 0 26 2 1 75 15 13 143 chain 118088 chr3 198022430 + 163289350 163290896 THE1A-int 1579 + 0 1579 31775 113 0 3 382 1 0 43 1 2 82 0 1 130 17 20 303 21 47 453 chain 15974 chr3 198022430 + 163300020 163300287 L1MA1 4479 + 3080 3339 138434 54 1 2 24 0 7 8 5 0 28 1 0 48 1 0 12 4 0 53 7 2 21 chain 15980 chr3 198022430 + 163349512 163349701 L1PA7 6471 - 6 195 138405 189 chain 160914 chr3 198022430 + 163352169 163353904 L1PA2 6032 - 0 1735 23211 1735 chain 49245 chr3 198022430 + 163353904 163354438 L1PA2 6032 + 3750 4288 59373 479 0 4 55 chain 49052 chr3 198022430 + 163356071 163356686 HERVL-int 5654 - 5019 5640 59709 217 0 2 64 5 9 329 chain 231263 chr3 198022430 + 163358769 163361455 L1PA5 6144 + 3446 6143 17244 239 2 0 474 6 7 175 0 4 202 1 2 194 0 3 551 0 4 308 3 2 199 0 1 144 1 0 4 0 1 183 chain 29534 chr3 198022430 + 163363163 163363475 AluYb8 318 - 6 318 86503 312 chain 8717 chr3 198022430 + 163368575 163368677 L1P1 4361 - 1300 1402 167099 102 chain 251298 chr3 198022430 + 163383553 163387139 L1PB1 5432 - 13 3662 16157 15 1 0 12 2 1 21 1 0 8 0 1 15 3 4 10 8 5 18 28 17 11 1 0 44 1 0 16 2 1 50 3 1 11 13 9 5 1 0 4 1 0 14 7 0 12 63 0 13 7 0 49 1 0 5 9 10 39 3 4 20 0 13 247 1 0 85 0 1 52 0 1 125 0 9 112 8 15 347 0 1 101 4 133 190 1 3 525 0 1 37 24 23 119 8 4 243 0 5 79 7 8 148 20 21 556 chain 49180 chr3 198022430 + 163406930 163407558 LTR14B 630 + 0 630 59612 316 8 11 225 1 0 78 chain 309106 chr3 198022430 + 163413340 163417113 HERV17-int 4347 - 0 4334 13043 585 2 0 100 4 0 142 0 4 124 0 1 244 1 0 69 0 1 448 7 1 353 3 0 298 0 1 508 5 0 561 0 575 39 0 1 148 7 6 24 11 9 18 0 4 4 1 0 52 2 1 13 chain 6477 chr3 198022430 + 163418735 163418815 LTR17 781 - 702 781 181416 23 1 0 56 chain 56278 chr3 198022430 + 163459522 163460160 L1PA4 6152 + 5503 6141 54973 638 chain 43688 chr3 198022430 + 163478037 163478512 L1PA3long 6157 - 2 477 64582 475 chain 105934 chr3 198022430 + 163478512 163479658 L1PA3long 6157 + 4535 5681 35273 1146 chain 17528 chr3 198022430 + 163480397 163480678 L1PB4 2604 - 140 390 134186 85 35 5 20 8 7 133 chain 3009 chr3 198022430 + 163486678 163486765 MER96B 391 + 230 318 224872 24 21 23 14 10 9 18 chain 68188 chr3 198022430 + 163491786 163492679 L1PA7 6471 - 7 915 49165 145 10 0 5 0 6 50 0 1 110 8 9 196 1 19 244 0 3 36 2 1 18 4 1 64 chain 55927 chr3 198022430 + 163492679 163493354 L1PA7 6471 + 4804 5481 55118 145 1 0 29 0 2 436 0 1 64 chain 5668 chr3 198022430 + 163498210 163498346 L1PB1 5432 - 174 298 188406 22 26 24 43 3 1 8 7 0 16 1 0 10 chain 38434 chr3 198022430 + 163519389 163519923 LTR12F 595 + 0 593 71532 74 0 37 33 2 0 33 40 63 148 0 1 204 chain 429375 chr3 198022430 + 163519954 163525103 HERV9-int 5642 + 11 5168 9324 505 0 1 84 14 2 113 6 0 398 7 20 110 1 0 31 1 3 120 0 1 5 1 0 174 6 4 456 3 4 1167 5 19 182 1 0 603 4 2 790 0 1 362 chain 4854 chr3 198022430 + 163566853 163566922 L1PB1 5432 - 13 79 196737 15 1 0 13 1 0 21 1 0 17 chain 60047 chr3 198022430 + 163566962 163568418 L1PB1 5432 + 4241 5296 52798 175 0 12 178 1 5 92 0 2 99 4 11 115 600 185 23 26 20 11 2 0 50 1 0 18 1 0 42 1 0 17 chain 125043 chr3 198022430 + 163573130 163574502 L1PA3long 6157 + 4784 6157 29380 1039 0 1 333 chain 27292 chr3 198022430 + 163591753 163592119 L1PA8 5853 + 5470 5847 95294 50 0 1 43 1 0 45 2 0 63 2 17 55 2 1 15 2 1 86 chain 28144 chr3 198022430 + 163624713 163625017 L1PA2 6032 + 5728 6032 92481 304 chain 26911 chr3 198022430 + 163625317 163625723 LTR7 482 + 0 482 96589 54 23 61 43 8 9 57 0 1 41 0 31 8 0 3 65 9 11 98 chain 300621 chr3 198022430 + 163625725 163629568 HERVH-int 3825 + 0 3825 13388 333 2 1 196 1 0 11 1 0 4 113 59 13 2 1 13 3 0 60 7 6 82 1 0 691 1 0 215 4 31 1081 14 0 311 1 27 197 5 6 42 2 3 25 26 27 292 6 11 37 1 0 50 chain 26173 chr3 198022430 + 163631369 163631770 LTR7 482 + 0 476 99310 68 7 96 16 46 0 44 0 1 39 1 32 180 chain 43394 chr3 198022430 + 163635818 163636375 MLT2A2 560 + 0 560 64945 39 0 1 164 4 6 350 chain 107197 chr3 198022430 + 163658854 163660071 L1PA5 6144 - 12 1229 34916 1217 chain 92553 chr3 198022430 + 163660072 163661126 L1PA5 6144 + 3836 4890 38799 1054 chain 80051 chr3 198022430 + 163697248 163698268 L1PA7 6471 - 2 1025 43567 170 1 2 257 46 49 291 0 2 77 3 0 175 chain 5863 chr3 198022430 + 163698276 163698341 L1PA3long 6157 + 6092 6157 186563 65 chain 171668 chr3 198022430 + 163707073 163709008 L1PA5 6144 - 0 1941 21861 258 0 1 584 0 4 844 1 0 171 0 2 77 chain 116705 chr3 198022430 + 163720575 163722014 LTR12C 1709 + 0 1709 32221 38 15 14 210 0 2 36 0 1 349 0 278 184 1 0 4 4 2 106 0 4 25 12 1 455 chain 36832 chr3 198022430 + 163727742 163728263 L1PA8 5853 + 5338 5852 73759 27 0 1 155 1 0 43 2 1 40 5 3 70 2 1 11 6 5 49 1 0 16 1 0 92 chain 4684 chr3 198022430 + 163739571 163740188 HERVFH21-int 991 - 88 467 198708 24 72 19 40 390 212 17 49 44 12 1 0 3 1 0 8 chain 288415 chr3 198022430 + 163754326 163757512 L1PA3long 6157 + 2963 6156 14132 267 0 4 2236 0 1 529 0 2 154 chain 62792 chr3 198022430 + 163772335 163773146 L1PA7 6471 - 2 816 51306 51 0 4 212 1 2 48 15 16 433 12 10 37 1 0 1 chain 79703 chr3 198022430 + 163773146 163774134 L1PA7 6471 + 4646 5642 43731 303 4 0 132 4 0 93 0 11 54 0 1 192 0 1 191 3 6 12 chain 13125 chr3 198022430 + 163774761 163774934 L1P3 4156 - 17 187 147742 24 2 1 7 2 0 138 chain 3765 chr3 198022430 + 163791231 163791275 LTR12C 1709 - 0 44 210893 44 chain 32872 chr3 198022430 + 163792708 163793143 MER57-int 2662 - 1898 2331 79418 58 0 1 211 4 1 128 1 0 5 1 2 27 chain 170662 chr3 198022430 + 163801432 163803379 L1PA5 6144 - 5 1962 21969 144 0 1 699 0 4 75 0 1 344 2 0 243 1 2 137 0 1 143 0 4 159 chain 37187 chr3 198022430 + 163808182 163808585 L1PA2 6032 - 289 696 73251 170 0 4 233 chain 7673 chr3 198022430 + 163808585 163808669 L1PA2 6032 + 5944 6028 173082 84 chain 49215 chr3 198022430 + 163816493 163817446 L1PA7 6471 - 2 604 59580 157 1 0 7 3 0 167 353 2 92 0 2 30 0 2 143 chain 27058 chr3 198022430 + 163830518 163830860 THE1A 353 - 12 353 96085 143 1 0 198 chain 15547 chr3 198022430 + 163838135 163838334 AluYc 301 + 93 294 139740 27 1 2 31 0 1 140 chain 21697 chr3 198022430 + 163840323 163840701 L1PA15 4387 + 4008 4366 121401 96 1 0 27 1 0 54 1 0 16 10 6 9 3 2 49 27 23 22 2 0 18 5 0 27 1 0 9 chain 20806 chr3 198022430 + 163843537 163843768 L1PA5 6144 - 12 243 124579 231 chain 17872 chr3 198022430 + 163843768 163843969 L1PA5 6144 + 5724 5925 133189 201 chain 24662 chr3 198022430 + 163851842 163852135 L1PA4 6152 - 2691 2985 106661 79 1 0 4 0 1 194 1 2 14 chain 236648 chr3 198022430 + 163852135 163854839 L1PA4 6152 + 3436 6143 16945 244 1 0 621 1 0 1002 1 5 116 0 1 473 2 1 218 0 1 25 chain 479992 chr3 198022430 + 163875271 163881654 L1PA7 6471 - 10 6446 7730 327 5 6 43 0 1 5 0 1 67 0 1 20 11 14 67 0 1 12 0 2 95 0 4 754 43 33 189 0 1 41 0 3 94 0 4 250 0 1 113 0 3 8 0 1 297 0 1 125 0 2 320 1 5 63 0 1 613 4 5 173 2 1 53 1 3 135 0 2 57 6 7 85 0 2 18 8 5 100 0 21 313 4 16 245 6 7 328 0 1 14 15 17 103 8 7 81 11 7 352 21 19 62 8 21 209 0 1 141 45 25 212 chain 26813 chr3 198022430 + 163886836 163887157 L1PA7 6471 - 7 330 96928 140 0 1 8 1 2 172 chain 21547 chr3 198022430 + 163887382 163887628 L1PA4 6152 - 1 245 121974 5 2 0 239 chain 87837 chr3 198022430 + 163892576 163893676 L1PA7 6471 + 5365 6467 40433 256 1 0 452 3 4 61 0 1 12 0 1 315 chain 4612 chr3 198022430 + 163897550 163897693 LTR12C 1709 + 978 1045 199494 39 78 2 26 chain 2674 chr3 198022430 + 163897693 163897726 LTR12C 1709 + 844 877 220212 33 chain 61413 chr3 198022430 + 163928298 163929016 L1PA5 6144 - 0 717 52147 149 0 1 101 4 2 464 chain 245632 chr3 198022430 + 163933873 163938105 HERVK22-int 3844 - 0 3594 16475 77 32 31 74 809 198 24 14 10 20 80 67 6 2 0 16 1 0 4 5 0 6 1 0 4 5 1 14 2 0 45 1 0 10 4 0 39 9 7 16 1 0 22 13 12 17 10 8 55 0 1 13 1 0 129 3 0 5 0 3 194 0 2 616 8 13 262 0 5 246 0 4 171 10 7 5 0 3 1031 1 3 33 10 9 56 chain 165118 chr3 198022430 + 163944472 163947133 MER57-int 2662 - 8 2560 22639 29 3 0 30 4 1 11 1 0 16 12 9 10 1 0 5 1 0 18 100 64 25 18 12 91 18 5 156 2 0 136 0 1 126 3 0 51 0 2 15 6 0 4 9 0 33 10 14 92 2 1 132 12 17 17 42 0 121 8 6 145 6 8 14 10 34 270 1 2 20 0 1 90 2 0 131 0 23 196 45 1 154 3 0 73 18 22 14 0 1 12 0 5 80 1 0 6 chain 264210 chr3 198022430 + 163974831 163978324 L1PA8 5853 + 2327 5848 15475 314 1 2 165 0 1 73 8 0 402 7 39 62 8 10 87 1 2 566 7 15 68 0 1 60 0 2 134 7 4 202 7 0 131 0 6 62 1 0 4 0 1 49 0 1 187 7 11 18 0 3 72 0 1 129 11 1 138 3 4 48 2 1 70 2 1 68 0 1 21 1 0 46 2 0 67 20 18 45 2 1 14 6 5 88 chain 22009 chr3 198022430 + 163985432 163985743 THE1C 375 - 49 362 120190 143 1 0 44 14 18 13 1 0 95 chain 3671 chr3 198022430 + 163989211 163989251 MLT1A 405 + 135 175 212361 40 chain 440915 chr3 198022430 + 164009313 164014214 L1HS 6032 + 0 4906 9028 257 1 0 15 9 0 92 0 1 3058 0 13 1010 0 1 459 chain 32166 chr3 198022430 + 164017486 164017941 MLT2A1 477 - 0 477 80590 40 6 0 17 4 36 214 9 6 59 3 2 103 chain 45353 chr3 198022430 + 164028606 164029174 LTR12_ 688 - 0 673 62653 157 0 103 123 0 3 43 2 1 243 chain 66758 chr3 198022430 + 164045612 164046424 L1PA7 6471 + 5617 6460 49751 327 12 24 309 0 19 164 chain 37162 chr3 198022430 + 164051796 164052280 LTR6B 557 - 28 557 73293 28 0 1 6 0 1 98 1 0 35 0 1 270 0 15 17 7 35 22 chain 32360 chr3 198022430 + 164054133 164054991 HERVS71-int 4705 - 541 1395 80254 15 3 1 7 2 0 9 1 0 8 29 25 6 1 0 32 0 63 35 12 11 10 24 21 19 1 0 4 4 2 17 1 0 22 5 2 32 1 0 6 6 4 20 9 5 21 20 16 7 1 0 21 1 0 8 1 0 5 2 0 5 11 8 9 1 0 22 2 1 34 1 0 16 7 5 50 5 2 31 6 5 26 32 26 39 1 0 12 7 5 18 1 0 16 7 5 10 22 18 23 1 0 5 1 0 9 chain 38138 chr3 198022430 + 164059190 164059685 LTR6B 557 - 16 557 71933 40 0 1 4 0 1 44 0 1 49 1 0 41 0 1 272 0 15 15 7 35 22 chain 281699 chr3 198022430 + 164061612 164065226 HERVH-int 3825 - 0 3825 14552 222 0 2 147 0 1 115 8 218 39 9 11 964 5 20 616 1 0 13 15 17 9 9 0 110 8 9 82 16 1 55 8 7 324 1 4 60 1 0 49 2 1 5 0 1 28 1 0 39 1 0 4 25 22 12 1 0 4 11 25 9 1 0 10 1 0 25 1 0 6 0 1 6 5 0 224 0 1 307 chain 4107 chr3 198022430 + 164114276 164114322 MADE1 96 + 0 46 205815 46 chain 109587 chr3 198022430 + 164118901 164120264 LTR12C 1709 - 0 1709 34303 481 0 4 71 0 249 67 1 0 9 5 123 24 1 0 103 2 1 294 10 1 54 29 16 212 chain 9802 chr3 198022430 + 164143618 164143820 L1PB1 5432 - 8 188 161583 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 11 11 8 13 3 1 7 0 1 2 8 0 7 3 0 16 1 0 36 chain 52996 chr3 198022430 + 164213654 164214262 L1PA5 6144 - 7 617 57018 147 0 1 176 0 1 285 chain 11906 chr3 198022430 + 164218358 164218507 L1PB4 2604 - 565 713 152573 58 1 0 90 chain 202698 chr3 198022430 + 164218528 164220810 L1PA4 6152 - 14 2300 19014 388 0 3 1082 0 1 812 chain 4754 chr3 198022430 + 164247308 164247419 L1PA17 2846 - 153 263 197864 25 28 27 9 1 0 7 0 2 23 1 0 17 chain 26936 chr3 198022430 + 164254341 164254666 L1PA7 6471 - 2 327 96498 325 chain 12485 chr3 198022430 + 164261573 164261716 L1PA5 6144 - 14 160 150318 116 0 3 27 chain 4963 chr3 198022430 + 164265546 164265608 L1P1 4361 - 51 112 195550 5 1 0 56 chain 70687 chr3 198022430 + 164265609 164266422 L1PA5 6144 + 5331 6142 48071 181 0 2 621 4 0 7 chain 3062 chr3 198022430 + 164272385 164272419 MER58A 224 - 139 173 223787 34 chain 3372 chr3 198022430 + 164281641 164281698 L1MA3 4352 - 35 90 217636 29 8 6 20 chain 48505 chr3 198022430 + 164350665 164351187 L1PA2 6032 - 349 871 60104 522 chain 31554 chr3 198022430 + 164351187 164351540 L1PA2 6032 + 5681 6032 81555 15 1 0 316 1 0 20 chain 64879 chr3 198022430 + 164357463 164358199 L1PA4 6152 - 118 853 50621 464 1 0 271 chain 3161 chr3 198022430 + 164365581 164365617 MSTA 426 - 19 55 221719 36 chain 4493 chr3 198022430 + 164376883 164376939 MER2 342 - 133 189 200861 56 chain 153142 chr3 198022430 + 164386818 164388655 L1PA7 6471 + 4631 6466 24210 324 3 1 265 1 0 378 0 1 866 chain 16707 chr3 198022430 + 164392215 164392417 AluSc8 310 + 8 214 136386 118 0 4 84 chain 9592 chr3 198022430 + 164395564 164395673 L1PA3long 6157 + 6046 6157 162634 104 0 2 5 chain 543986 chr3 198022430 + 164420395 164426408 L1PA3long 6157 + 0 6142 2213 152 0 1 230 1 0 393 0 128 3569 0 1 1668 chain 15673 chr3 198022430 + 164439767 164440106 L1PB1 5432 - 10 318 139355 18 1 0 13 1 0 21 1 0 24 2 0 14 9 6 17 19 8 20 1 0 44 7 6 10 2 1 52 34 26 4 1 0 24 chain 44252 chr3 198022430 + 164468233 164468788 L1PA7 6471 - 3 563 63878 9 2 0 98 1 0 414 0 8 31 chain 51998 chr3 198022430 + 164481877 164482479 L1PA4 6152 - 0 608 57628 6 0 5 102 0 1 494 chain 113695 chr3 198022430 + 164501680 164503100 SVA_B 1603 + 6 1603 33175 15 55 0 18 3 32 496 3 0 137 2 246 68 37 0 536 0 1 42 2 0 6 chain 17883 chr3 198022430 + 164504378 164504606 L1P1 4361 - 20 248 132957 12 2 1 23 1 0 39 0 3 115 1 0 35 chain 98630 chr3 198022430 + 164504606 164505784 L1P1 4361 + 5 1183 37119 525 0 1 281 2 1 370 chain 31965 chr3 198022430 + 164522450 164522843 MLT2A1 477 - 93 477 80911 214 4 1 93 6 0 76 chain 7287 chr3 198022430 + 164524702 164524785 MLT2A1 477 - 315 398 175541 83 chain 201707 chr3 198022430 + 164532275 164534661 HERV9-int 5642 + 2400 4812 19088 128 30 55 310 0 1 4 2 1 191 0 1 684 1 0 197 0 1 839 chain 78507 chr3 198022430 + 164536089 164537377 LTR12D 1347 + 0 1345 44267 184 86 86 28 2 38 200 206 32 130 15 8 207 0 2 28 0 200 202 chain 3977 chr3 198022430 + 164536589 164536637 LTR12D 1347 + 645 693 177170 48 chain 2337 chr3 198022430 + 164536637 164536745 LTR12D 1347 + 611 678 182966 10 41 0 57 chain 3908 chr3 198022430 + 164536748 164536794 LTR12D 1347 + 490 536 208742 46 chain 43306 chr3 198022430 + 164542619 164543221 PABL_A 660 + 0 648 65041 81 4 5 189 12 56 130 4 3 112 11 13 59 chain 17646 chr3 198022430 + 164578436 164578676 MER41A 554 + 314 554 133852 142 6 0 12 0 5 62 5 6 13 chain 13601 chr3 198022430 + 164622534 164622843 LTR3B_ 500 - 0 313 145976 16 3 40 22 114 80 42 0 1 112 chain 116269 chr3 198022430 + 164639206 164640581 L1PA5 6144 + 4763 6144 32354 531 1 4 238 0 7 10 7 0 257 0 1 319 1 3 11 chain 8132 chr3 198022430 + 164662789 164662897 MLT2C2 476 + 2 109 170320 71 1 0 36 chain 22176 chr3 198022430 + 164663007 164663351 THE1B 368 - 12 368 119465 66 3 0 81 1 22 9 19 0 6 8 6 102 5 20 44 chain 22410 chr3 198022430 + 164664809 164665079 AluY 311 + 12 287 118436 119 0 5 151 chain 29182 chr3 198022430 + 164669077 164669471 MER41A 554 - 0 398 88143 105 1 4 201 10 11 77 chain 26934 chr3 198022430 + 164688257 164688582 L1PA7 6471 - 17 342 96503 325 chain 52853 chr3 198022430 + 164688582 164689227 L1PA7 6471 + 5451 6105 57101 169 2 11 474 chain 9974 chr3 198022430 + 164706771 164706882 L1PA3long 6157 + 6045 6156 160707 111 chain 27469 chr3 198022430 + 164708355 164708684 L1PA4 6152 + 5813 6139 94746 8 2 0 222 6 5 91 chain 196027 chr3 198022430 + 164742995 164745863 L1PBa 3878 + 880 3802 19497 281 1 0 137 0 13 182 8 7 104 1 7 10 0 1 231 11 14 411 0 12 359 1 4 8 3 0 46 0 3 89 7 11 140 129 140 32 0 1 99 3 0 29 1 2 40 7 0 162 0 1 5 5 6 9 0 19 133 16 19 68 2 1 22 2 0 10 19 13 11 1 0 5 5 3 13 1 0 9 chain 41623 chr3 198022430 + 164798212 164798700 L1PA5 6144 + 5656 6144 67126 457 0 2 17 3 1 11 chain 37932 chr3 198022430 + 164811912 164812356 L1PA7 6471 - 10 453 72233 330 1 0 113 chain 123383 chr3 198022430 + 164827336 164828702 L1PA3long 6157 + 4787 6157 29923 1315 0 4 51 chain 24087 chr3 198022430 + 164833385 164833696 L1PA10 4194 - 51 355 109816 26 4 1 40 4 0 237 chain 497691 chr3 198022430 + 164852206 164858292 L1PA5 6144 - 3 6144 6974 135 0 7 7 7 0 807 0 13 149 0 1 6 0 9 169 0 1 70 11 5 57 7 6 289 0 12 258 10 11 97 8 12 419 1 2 149 0 4 167 8 6 217 0 1 120 0 5 547 0 4 64 1 2 1144 9 0 540 0 1 417 1 2 64 1 15 130 chain 496116 chr3 198022430 + 164881636 164887742 L1PA6 6164 - 8 6164 7060 133 16 16 14 0 1 105 12 1 126 0 8 424 0 1 11 0 1 316 0 30 281 0 9 118 0 1 546 0 3 390 0 1 110 0 3 190 0 1 991 1 0 35 0 2 97 0 1 4 1 0 385 18 15 312 0 1 380 3 0 6 5 8 99 0 15 32 0 5 361 1 0 230 23 2 14 0 4 87 24 25 205 chain 18281 chr3 198022430 + 164987487 164987695 L1PA4 6152 - 0 207 132124 5 1 0 202 chain 40908 chr3 198022430 + 164987703 164988164 L1P1 4361 - 2711 3173 68023 419 0 1 42 chain 37996 chr3 198022430 + 164992282 164992701 L1PA3long 6157 - 0 419 72137 419 chain 7330 chr3 198022430 + 165015738 165015834 MER75 514 - 0 97 175228 24 3 4 69 chain 28480 chr3 198022430 + 165019560 165019857 AluYa5 310 + 1 298 91263 297 chain 2971 chr3 198022430 + 165026535 165026568 MADE1 96 - 18 51 225653 33 chain 58394 chr3 198022430 + 165033844 165034471 L1PA2 6032 - 7 634 53750 627 chain 216557 chr3 198022430 + 165034561 165036935 L1PA3long 6157 - 0 2375 18082 2249 0 1 125 chain 31663 chr3 198022430 + 165078742 165079104 L1PA4 6152 - 0 368 81384 6 0 5 149 0 1 207 chain 21354 chr3 198022430 + 165079104 165079341 L1PA4 6152 + 5550 5787 122670 237 chain 7953 chr3 198022430 + 165085601 165085822 LTR27B 950 - 769 950 171314 16 82 41 63 21 22 39 chain 40742 chr3 198022430 + 165106034 165106629 LTR14B 630 - 0 608 68256 200 47 16 15 0 9 73 0 25 19 14 25 85 1 0 141 chain 51679 chr3 198022430 + 165112902 165113635 MER4E1 777 + 34 768 57837 504 6 0 11 7 1 51 41 55 95 1 0 17 chain 32960 chr3 198022430 + 165125693 165126074 L1PA5 6144 - 718 1100 79278 153 1 2 227 chain 59770 chr3 198022430 + 165126075 165126792 L1PA5 6144 + 5421 6142 52950 435 1 2 129 4 11 137 4 0 7 chain 161488 chr3 198022430 + 165144348 165146163 L1PA5 6144 - 3 1819 23128 989 0 1 826 chain 12473 chr3 198022430 + 165147554 165147851 L1PB1 5432 + 5030 5275 150363 73 53 11 24 1 0 4 3 2 12 2 0 3 2 0 9 3 1 48 6 5 14 1 0 14 0 6 6 6 0 13 chain 10649 chr3 198022430 + 165147900 165148210 L1PB1 5432 - 35 318 157609 4 1 0 23 1 0 17 33 28 17 43 33 38 1 0 15 13 12 41 19 13 12 3 2 4 1 0 24 chain 2985 chr3 198022430 + 165167101 165167188 L1PB1 5432 + 5341 5422 225332 5 2 0 20 7 6 19 1 0 13 5 4 10 1 0 4 chain 279465 chr3 198022430 + 165189376 165192576 L1PA4 6152 - 1 3166 14663 124 15 0 732 0 1 939 0 4 302 1 2 91 0 2 13 0 1 526 37 8 420 chain 13556 chr3 198022430 + 165195930 165196204 L1PA15 4387 - 71 329 146152 44 22 19 28 8 0 8 17 12 20 1 0 58 1 0 23 1 0 5 1 2 13 0 2 24 chain 10334 chr3 198022430 + 165205976 165206098 AluY 311 + 63 186 158964 69 0 1 53 chain 19799 chr3 198022430 + 165228701 165228969 L1PA7 6471 + 6211 6466 127814 191 10 1 55 4 0 8 chain 55709 chr3 198022430 + 165234370 165234996 L1PA4 6152 + 5516 6143 55301 522 0 1 104 chain 24246 chr3 198022430 + 165247652 165247995 MLT2A1 477 + 4 347 108965 145 32 31 23 1 2 142 chain 133342 chr3 198022430 + 165248002 165249619 HERVL-int 5654 - 4011 5654 27362 555 0 15 418 1 0 174 0 3 157 6 14 39 0 1 267 chain 29785 chr3 198022430 + 165249619 165250063 MLT2A1 477 - 0 477 85532 37 18 57 111 12 8 60 0 1 7 1 0 16 0 1 9 4 1 169 chain 3904 chr3 198022430 + 165260340 165260384 MER95 416 + 2 46 208788 44 chain 39130 chr3 198022430 + 165265378 165265841 HERVK11D-int 613 + 153 613 70564 135 1 0 151 0 1 145 3 0 28 chain 66291 chr3 198022430 + 165265841 165266683 MER11D 897 + 0 897 49958 240 0 10 22 28 49 103 3 4 165 4 27 277 chain 541067 chr3 198022430 + 165290119 165296134 L1PA3long 6157 + 0 6152 2657 152 0 1 420 0 4 199 0 128 989 0 1 1282 1 2 768 0 1 1379 0 1 825 chain 49959 chr3 198022430 + 165297710 165298342 L1PA8 5853 + 5228 5853 59053 336 1 0 44 2 0 71 1 0 14 1 0 46 5 4 17 1 0 93 chain 107872 chr3 198022430 + 165303371 165304563 L1HS 6032 - 4115 5308 34764 956 0 1 236 chain 364236 chr3 198022430 + 165304932 165308960 L1PA3long 6157 + 2126 6153 11251 3889 1 0 138 chain 37389 chr3 198022430 + 165320491 165320943 L1PA5 6144 - 7 459 72972 325 2 0 5 9 11 111 chain 18781 chr3 198022430 + 165338438 165338715 MER4D1 891 + 16 312 130736 90 25 47 113 4 1 45 chain 16702 chr3 198022430 + 165345696 165345991 THE1B 368 + 0 306 136399 104 31 32 33 1 0 29 34 45 63 chain 11664 chr3 198022430 + 165355696 165355836 MER4E 760 + 0 140 153625 140 chain 112376 chr3 198022430 + 165366345 165367669 LTR12C 1709 - 0 1709 33567 167 0 102 63 0 2 147 0 4 106 3 1 5 1 0 126 0 278 61 0 2 645 chain 154681 chr3 198022430 + 165372963 165374902 L1P2 5180 + 2 1964 24019 43 6 14 39 0 13 34 10 9 44 6 5 44 3 2 208 5 4 45 15 14 267 8 6 496 0 1 193 0 8 473 chain 46667 chr3 198022430 + 165392842 165393428 THE1B-int 1605 + 0 611 61481 432 0 25 154 chain 72201 chr3 198022430 + 165394260 165395121 MER11D 897 - 0 897 47376 280 3 26 477 1 14 100 chain 9792 chr3 198022430 + 165409778 165409919 THE1B 368 - 204 360 161641 96 9 24 36 chain 63861 chr3 198022430 + 165422825 165423564 L1PA5 6144 + 5398 6144 51074 591 0 7 148 chain 9574 chr3 198022430 + 165432365 165432490 MER57-int 2662 - 2427 2554 162726 94 0 2 31 chain 162706 chr3 198022430 + 165497000 165499544 L1PA8 5853 + 3632 5853 22977 171 0 3 57 0 4 125 0 2 89 0 1 98 16 18 102 0 1 206 15 15 51 0 1 9 0 1 140 1 0 4 10 11 268 2 0 376 321 0 178 4 0 8 0 3 7 9 0 21 8 6 70 2 1 61 2 1 19 1 0 93 chain 19903 chr3 198022430 + 165543341 165543576 L1PA4 6152 - 0 235 127470 235 chain 22237 chr3 198022430 + 165561790 165562046 AluY 311 + 30 287 119175 102 0 1 154 chain 210917 chr3 198022430 + 165587014 165589929 L1PB1 5432 - 22 2936 18434 6 1 0 13 1 0 21 1 0 25 1 0 13 28 19 17 3 0 16 1 0 43 1 0 16 2 1 53 2 0 6 16 14 33 1 0 7 8 7 47 19 19 55 4 5 124 1 17 42 0 1 76 1 0 85 2 0 175 1 2 147 1 0 94 0 5 51 0 1 432 0 1 137 0 1 4 1 0 650 25 24 16 0 3 49 6 5 247 0 1 88 chain 18347 chr3 198022430 + 165596553 165596759 AluY 311 + 104 311 131939 28 0 1 178 chain 22470 chr3 198022430 + 165596761 165597104 L1PA8 5853 + 5515 5849 118156 20 2 0 29 1 0 44 2 0 67 6 5 13 1 0 46 4 3 16 4 3 88 chain 82831 chr3 198022430 + 165597591 165598505 L1PA3long 6157 - 2368 3282 42371 914 chain 215400 chr3 198022430 + 165598505 165600877 L1PA3long 6157 + 3787 6157 18138 2111 1 0 117 1 0 142 chain 35627 chr3 198022430 + 165603240 165603686 MER4A1 472 - 0 443 75374 85 3 0 358 chain 4245 chr3 198022430 + 165611827 165611877 MADE1 96 + 46 96 203942 50 chain 215794 chr3 198022430 + 165618135 165620566 L1PA5 6144 - 6 2433 18122 199 1 0 134 2 1 210 2 0 1883 chain 27938 chr3 198022430 + 165631577 165632029 MLT2A2 560 - 0 560 93211 45 0 2 7 8 4 68 24 133 23 1 0 46 34 37 15 1 0 180 chain 67095 chr3 198022430 + 165632544 165633355 L1PA7 6471 + 5638 6457 49620 606 1 0 63 4 5 87 9 17 41 chain 102000 chr3 198022430 + 165635518 165636798 LTR12C 1709 - 0 1709 36263 84 15 13 71 0 102 149 0 10 52 0 4 106 3 1 5 1 0 9 0 318 295 3 0 189 5 6 109 1 3 183 chain 25050 chr3 198022430 + 165638868 165639301 LTR14A 344 + 0 344 104548 45 3 0 8 41 0 58 31 0 94 20 0 57 0 5 4 0 1 72 chain 121185 chr3 198022430 + 165641140 165642627 LTR12C 1709 - 0 1709 30639 481 0 4 103 4 161 123 1 0 406 1 0 129 11 44 57 1 0 88 24 55 58 chain 446807 chr3 198022430 + 165648892 165654372 L1PA6 6164 + 1 6160 8855 138 15 0 8 0 15 119 7 8 278 1 0 23 0 1 480 0 1 285 8 0 93 1 3 33 0 1 264 8 6 517 0 1 58 0 1 62 1 5 104 6 7 73 0 677 630 8 9 1096 1 0 317 0 1 9 6 5 831 chain 72529 chr3 198022430 + 165672036 165673140 L1PB1 5432 + 4342 5417 47253 284 2 0 145 5 6 326 1 2 9 3 0 22 28 22 9 2 0 53 2 1 16 1 0 41 8 7 11 3 0 17 30 20 13 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 24415 chr3 198022430 + 165675110 165675382 L1PA4 6152 + 5871 6143 108002 272 chain 199228 chr3 198022430 + 165676617 165678802 L1PA3long 6157 - 0 2181 19266 149 1 0 1413 6 3 616 chain 163002 chr3 198022430 + 165678802 165680599 L1PA3long 6157 + 2153 3951 22924 152 1 2 1644 chain 67005 chr3 198022430 + 165700041 165700800 L1PA5 6144 + 5377 6144 49652 91 0 8 668 chain 19761 chr3 198022430 + 165707934 165708166 L1PA5 6144 - 2 234 127932 232 chain 23347 chr3 198022430 + 165715596 165715917 MLT2A1 477 - 154 477 113943 14 13 15 94 0 2 18 0 1 8 3 0 171 chain 341861 chr3 198022430 + 165715917 165720606 HERVL-int 5654 - 0 4410 11839 57 1 0 4 0 1 73 0 1 65 6 7 84 309 0 221 1 0 470 10 18 266 1 2 6 1 0 102 0 1 4 1 0 182 1 0 218 0 11 240 6 8 210 4 0 322 0 3 136 3 4 998 1 2 202 10 12 65 0 1 216 0 4 94 0 1 99 chain 245513 chr3 198022430 + 165723812 165726661 L1PA5 6144 - 9 2841 16483 507 8 0 251 1 0 331 10 2 7 1 0 471 0 1 1055 2 1 94 0 1 111 chain 15929 chr3 198022430 + 165734800 165735136 L1PB1 5432 - 28 318 138581 13 1 0 5 18 2 11 1 0 27 2 0 14 1 0 9 2 0 12 9 0 14 4 1 16 1 0 43 1 0 16 2 1 52 2 0 7 9 5 12 3 2 4 1 0 24 chain 541384 chr3 198022430 + 165738891 165744912 L1PA3long 6157 - 0 6155 2608 662 0 3 829 0 1 1659 0 1 1561 0 1 191 1 0 345 9 137 613 0 1 151 chain 23784 chr3 198022430 + 165759783 165760081 AluSp 311 + 0 292 111567 100 7 1 191 chain 9868 chr3 198022430 + 165773238 165773362 AluY 311 + 172 296 161242 124 chain 26851 chr3 198022430 + 165794401 165794878 L1PB1 5432 - 12 453 96805 28 6 5 17 1 0 24 2 0 14 15 7 12 8 0 17 3 0 16 1 0 43 1 0 16 2 1 50 3 1 10 17 12 9 1 0 24 1 0 11 1 0 124 chain 73856 chr3 198022430 + 165795343 165796205 L1PA5 6144 + 5263 6128 46586 34 0 4 694 5 4 129 chain 181640 chr3 198022430 + 165873515 165875563 L1PA5 6144 - 0 2054 20830 154 0 1 695 0 1 948 0 4 251 chain 9023 chr3 198022430 + 165875564 165875659 L1PA5 6144 + 3992 4087 165475 95 chain 4029 chr3 198022430 + 165875929 165875985 MLT1A0 366 + 291 350 206953 40 2 5 14 chain 4045 chr3 198022430 + 165938667 165938718 MER51A 677 + 293 344 206732 51 chain 409615 chr3 198022430 + 165945828 165950250 L1PA2 6032 + 1603 6027 9814 92 0 2 4330 chain 62727 chr3 198022430 + 165971798 165972583 L1PA8A 6298 + 5488 6287 51575 92 0 1 154 1 0 169 0 6 166 0 7 9 0 1 194 chain 104892 chr3 198022430 + 165975490 165976818 LTR12C 1709 - 0 1707 35530 88 22 22 22 35 137 28 0 4 143 0 2 35 0 4 106 4 2 4 1 0 89 0 152 23 0 118 728 chain 8293 chr3 198022430 + 165981646 165981740 L1PA5 6144 + 6050 6144 169442 94 chain 29763 chr3 198022430 + 166036478 166036883 LTR12 884 - 371 884 85594 40 1 0 7 0 1 87 2 0 209 2 113 30 1 0 26 chain 24442 chr3 198022430 + 166037762 166038050 L1PA4 6152 + 5855 6143 107848 43 1 0 61 0 1 183 chain 16438 chr3 198022430 + 166067765 166067997 THE1B 368 + 150 368 137100 45 7 0 54 7 0 119 chain 14366 chr3 198022430 + 166072404 166072558 AluYb9 318 - 164 318 143325 154 chain 162424 chr3 198022430 + 166072558 166074399 L1PA3long 6157 + 4323 6157 23011 1359 9 1 140 0 1 333 chain 16889 chr3 198022430 + 166081186 166081376 L1P1 4361 - 3274 3464 135866 190 chain 108191 chr3 198022430 + 166081376 166082584 L1PA3long 6157 + 4941 6149 34653 1208 chain 174901 chr3 198022430 + 166094636 166096788 L1PA7 6471 - 957 3114 21473 331 0 1 75 2 1 94 8 9 995 1 3 176 8 6 182 0 1 4 5 4 79 0 4 192 chain 69801 chr3 198022430 + 166096788 166097706 L1PA7 6471 + 5537 6459 48470 77 8 7 15 14 17 56 0 1 428 0 1 158 2 1 5 0 1 155 chain 8798 chr3 198022430 + 166100503 166100600 L1PA5 6144 + 6042 6139 166653 97 chain 47528 chr3 198022430 + 166114917 166115517 L1P3 4156 + 3170 3781 60822 317 0 1 58 0 4 88 11 17 126 chain 23548 chr3 198022430 + 166117484 166117773 AluSp 311 - 14 301 112862 165 2 0 122 chain 10540 chr3 198022430 + 166120782 166120902 L1P1 4361 - 4239 4360 158088 7 0 1 113 chain 80592 chr3 198022430 + 166141582 166142704 LTR12C 1709 + 0 1709 43348 214 0 2 37 26 0 14 1 26 45 0 43 227 1 2 65 11 446 103 0 4 35 0 2 181 55 26 4 1 0 39 1 132 62 chain 24643 chr3 198022430 + 166152887 166153176 AluY 311 + 0 294 106764 50 0 4 78 0 1 161 chain 28413 chr3 198022430 + 166177481 166177779 AluYd8 298 + 0 298 91524 298 chain 318957 chr3 198022430 + 166220049 166223805 HERVH-int 3825 - 0 3825 12635 1821 0 1 773 16 1 450 0 1 9 0 2 10 0 1 53 2 1 46 1 0 4 37 65 7 1 0 10 1 0 39 0 56 142 1 0 333 chain 445301 chr3 198022430 + 166228101 166234644 L1PA8A 6298 + 79 6290 8895 40 67 71 14 10 5 12 5 4 4 1 0 6 1 0 8 1 0 14 4 0 8 1 0 42 2 1 11 15 9 79 13 15 10 51 10 26 1 0 138 2 0 24 0 4 386 0 1 90 15 0 11 1 4 11 2 0 85 1 2 52 14 6 398 1 0 332 6 0 7 1 8 168 0 1 44 1 0 8 4 5 135 0 2 67 0 1 5 7 6 9 0 8 99 20 29 609 0 1 4 2 1 76 1 4 51 0 1 12 307 13 4 0 1 14 1 0 51 0 2 140 27 22 18 0 1 4 1 0 59 3 0 163 6 7 603 0 2 314 0 1 31 5 6 12 20 22 299 3 4 104 1 3 70 19 24 107 4 5 62 0 5 21 2 4 102 0 1 144 12 7 465 chain 70243 chr3 198022430 + 166236425 166237328 L1PA7 6471 + 5338 6254 48295 42 0 5 201 24 19 9 0 3 225 4 5 175 0 8 14 0 1 209 chain 26387 chr3 198022430 + 166289497 166289842 THE1B 368 + 0 358 98460 44 0 15 49 1 0 67 2 1 182 chain 20589 chr3 198022430 + 166308025 166308278 L1PA7 6471 + 6217 6468 125335 242 2 0 9 chain 49843 chr3 198022430 + 166314110 166314709 L1PA7 6471 - 254 854 59125 86 1 0 382 0 1 19 0 1 111 chain 18397 chr3 198022430 + 166314709 166314943 L1PA7 6471 + 6227 6460 131796 70 1 2 101 2 0 60 chain 64288 chr3 198022430 + 166332988 166333741 L1PA5 6144 - 0 733 50884 5 2 0 337 18 0 391 chain 5773 chr3 198022430 + 166333741 166333807 L1PA5 6144 + 5345 5411 187410 66 chain 533172 chr3 198022430 + 166335239 166341369 L1PA4 6152 + 14 6150 3827 1410 0 5 1068 7 8 775 7 6 1097 0 1 917 1 0 591 1 0 87 11 12 10 1 3 142 1 0 4 chain 258705 chr3 198022430 + 166344531 166347430 L1PA4 6152 - 0 2914 15766 844 0 4 1217 0 11 838 chain 20279 chr3 198022430 + 166366059 166366308 AluY 311 + 50 297 126279 73 6 4 170 chain 27781 chr3 198022430 + 166395314 166395615 AluYg6 310 - 5 310 93763 284 0 4 17 chain 27811 chr3 198022430 + 166395658 166396072 THE1B-int 1605 - 1244 1605 93663 224 0 1 26 60 6 104 chain 5078 chr3 198022430 + 166402968 166403032 L1PA13 3608 - 235 298 194319 37 1 0 26 chain 5636 chr3 198022430 + 166407982 166408050 MLT1D 503 - 49 120 188697 21 0 3 47 chain 14370 chr3 198022430 + 166427707 166428064 THE1B 368 - 0 365 143307 56 12 12 57 5 4 7 1 0 18 0 1 4 50 52 41 60 69 34 2 0 10 chain 4261 chr3 198022430 + 166433871 166433929 MER57-int 2662 - 3 58 203738 34 3 0 21 chain 77425 chr3 198022430 + 166433960 166434819 L1PA4 6152 - 12 871 44687 859 chain 194162 chr3 198022430 + 166434819 166436986 L1PA4 6152 + 3100 5270 19659 896 0 3 1271 chain 39121 chr3 198022430 + 166437883 166438389 L1PA6 6164 - 10 519 70572 77 0 1 82 1 2 307 1 2 38 chain 59505 chr3 198022430 + 166438407 166439171 MER57-int 2662 - 909 1671 53107 50 4 1 163 0 1 4 1 0 134 1 0 9 0 1 49 0 1 349 chain 24622 chr3 198022430 + 166493290 166493646 THE1B 368 - 0 366 106870 75 1 0 99 4 1 24 7 6 98 6 21 42 chain 10498 chr3 198022430 + 166508630 166508755 L1PA6 6164 - 2 126 158255 4 1 0 120 chain 25314 chr3 198022430 + 166512665 166512946 L1PA4 6152 - 15 296 103153 281 chain 4812 chr3 198022430 + 166512946 166512997 L1PA4 6152 + 5811 5862 197205 51 chain 32104 chr3 198022430 + 166540368 166540797 LTR7B 505 - 2 505 80685 61 2 1 54 0 1 24 2 1 38 0 1 42 0 2 26 3 27 12 0 38 60 0 10 105 chain 285379 chr3 198022430 + 166543580 166547084 HERVH-int 3825 - 0 3825 14331 225 0 2 267 0 214 36 9 11 556 43 26 351 0 3 113 0 10 295 4 31 561 3 0 345 1 0 50 1 0 5 0 1 6 0 61 21 0 31 24 1 0 10 1 0 38 5 0 456 1 0 76 chain 29025 chr3 198022430 + 166547103 166547501 LTR7B 505 - 19 505 88881 36 10 9 54 0 1 24 1 0 43 0 1 38 3 7 21 3 77 60 0 10 105 chain 36965 chr3 198022430 + 166550268 166550765 MER41A 554 - 0 554 73564 80 15 71 60 7 6 33 0 1 36 0 1 266 chain 124360 chr3 198022430 + 166560417 166561869 LTR12C 1709 + 0 1707 29580 541 1 2 133 0 200 195 0 47 106 0 4 399 1 0 15 0 4 61 chain 3462 chr3 198022430 + 166568130 166568168 FordPrefect 1504 + 1198 1236 215977 38 chain 13354 chr3 198022430 + 166600022 166600195 L1P1 4361 - 20 191 146866 12 2 1 22 2 1 135 chain 33693 chr3 198022430 + 166604590 166605026 MLT2A1 477 - 0 477 78101 47 3 45 181 0 1 21 0 1 11 4 1 169 chain 207907 chr3 198022430 + 166605026 166607662 HERVL-int 5654 - 0 2637 18643 17 1 0 50 9 0 726 0 1 44 1 0 7 1 0 98 1 0 531 0 1 436 13 10 95 1 2 6 0 1 42 1 4 19 3 4 96 0 1 153 0 8 285 chain 6100 chr3 198022430 + 166607663 166607729 MLT2A1 477 - 411 477 184412 66 chain 4194 chr3 198022430 + 166613018 166613066 MLT1B 390 + 283 331 204635 48 chain 485408 chr3 198022430 + 166621528 166627864 L1PA7 6471 - 1 6194 7545 70 2 0 198 0 1 498 8 3 71 9 8 18 0 4 154 3 2 165 0 1 154 159 15 125 6 5 304 0 8 171 0 1 203 25 14 4 1 0 176 0 4 257 1 0 307 3 0 32 0 1 10 3 2 319 0 1 6 8 7 180 0 1 5 0 1 269 7 4 47 6 3 20 26 32 825 0 1 549 0 4 601 0 1 113 13 10 71 1 3 42 2 3 89 chain 25674 chr3 198022430 + 166649842 166650143 AluY 311 + 1 306 101389 122 2 0 48 0 6 129 chain 4556 chr3 198022430 + 166667599 166667656 L1PB3 3668 - 2130 2187 200147 57 chain 21957 chr3 198022430 + 166685724 166686001 AluSc5 308 - 24 297 120399 153 1 0 92 3 0 28 chain 93477 chr3 198022430 + 166693439 166694527 LTR12C 1709 + 0 1709 38513 486 1 2 162 0 485 89 0 4 248 0 131 102 chain 19658 chr3 198022430 + 166695994 166696216 L1PA4 6152 + 5921 6143 128228 222 chain 133101 chr3 198022430 + 166706200 166707895 HERVL-int 5654 - 2897 5654 27404 654 0 1063 268 0 1 26 3 0 236 30 31 36 1 5 70 8 4 363 chain 34855 chr3 198022430 + 166707895 166708413 MLT2A1 477 - 0 477 76402 49 13 0 14 17 0 8 7 0 13 11 0 34 0 6 74 0 2 73 0 1 23 0 1 9 4 1 169 chain 23982 chr3 198022430 + 166713499 166713942 MLT2A1 477 + 1 469 110435 45 0 1 76 4 16 23 7 11 28 30 23 41 11 21 98 44 50 24 1 0 11 chain 26157 chr3 198022430 + 166714784 166715140 THE1A 353 - 12 353 99381 138 19 1 14 0 4 74 2 1 109 chain 10514 chr3 198022430 + 166715327 166715613 MER52-int 3354 - 83 356 158188 26 1 0 9 29 26 21 29 31 27 3 2 10 2 0 12 1 0 28 0 1 6 1 0 4 2 0 11 25 21 19 1 0 19 chain 5361 chr3 198022430 + 166722925 166723015 MSTB1 431 + 299 386 191422 22 16 13 52 chain 133342 chr3 198022430 + 166735868 166737479 SVA_B 1603 + 0 1603 27361 19 0 4 19 12 5 717 40 0 53 0 40 87 1 2 12 8 4 14 1 0 33 4 0 239 0 3 352 chain 7807 chr3 198022430 + 166753931 166754071 L1PA13 3608 - 116 249 172269 27 5 4 13 13 10 42 2 0 12 1 0 25 chain 52943 chr3 198022430 + 166758645 166759282 L1PA7 6471 - 527 1165 57052 321 1 2 315 chain 43059 chr3 198022430 + 166759282 166759790 L1PA7 6471 + 5960 6468 65344 508 chain 110130 chr3 198022430 + 166761327 166762571 L1P1 4361 - 248 1494 34122 180 0 1 222 0 1 842 chain 183772 chr3 198022430 + 166762571 166764596 L1PA3long 6157 + 4120 6149 20610 1884 0 4 141 chain 90877 chr3 198022430 + 166767807 166768988 L1PA8 5853 - 0 1188 39329 60 0 14 19 1 0 18 9 8 43 15 13 19 0 2 49 2 0 36 9 8 554 2 0 345 chain 19692 chr3 198022430 + 166795773 166796080 MER51B 395 - 14 306 128128 41 27 26 24 11 0 45 1 0 16 1 0 43 1 0 97 chain 42209 chr3 198022430 + 166810635 166811097 L1PA2 6032 - 0 462 66387 462 chain 128673 chr3 198022430 + 166841241 166842809 L1PA7 6471 + 4835 6459 28399 34 0 34 600 0 2 53 0 4 55 1 0 193 0 2 605 3 18 24 chain 532093 chr3 198022430 + 166847147 166853316 L1PA5 6144 + 0 6142 3951 259 0 1 166 6 5 601 0 1 103 5 7 312 0 4 328 1 2 124 8 9 893 0 1 233 0 1 126 1 0 497 1 0 3 1 0 946 4 0 688 11 0 4 6 0 692 14 0 136 chain 26367 chr3 198022430 + 166894705 166895071 MER9a3 513 - 117 513 98547 90 0 10 21 0 17 68 10 11 67 0 1 72 1 0 19 0 2 18 chain 381850 chr3 198022430 + 166895071 166899860 HERVK9-int 4720 - 0 4663 10706 7 0 2 6 1 0 48 0 3 56 8 9 224 0 14 459 206 0 588 1 0 4 0 1 974 0 1 89 0 3 978 1 0 679 0 4 344 9 65 30 1 0 8 1 0 67 chain 24252 chr3 198022430 + 166909162 166909533 THE1B 368 + 0 368 108931 92 39 31 49 2 1 120 1 0 16 1 8 51 chain 49412 chr3 198022430 + 166922028 166922563 L1HS 6032 - 0 535 59447 535 chain 180376 chr3 198022430 + 166965737 166968533 HUERS-P2-int 2744 + 24 2742 20956 7 4 0 21 1 0 33 2 0 6 1 0 50 7 6 16 3 0 10 22 18 42 129 94 106 4 2 10 0 1 12 6 0 7 5 0 32 7 5 248 7 5 188 43 59 355 0 6 724 0 2 23 5 6 134 29 10 80 1 0 94 9 8 68 2 0 36 9 0 33 2 5 5 1 0 9 3 1 12 4 3 13 5 12 14 3 0 34 19 14 12 2 0 27 chain 20921 chr3 198022430 + 166974983 166975476 L1MA1 4479 - 1214 1724 124206 14 1 0 66 0 1 6 4 0 18 1 0 5 40 42 48 6 0 7 83 106 56 4 10 21 2 1 19 7 8 33 1 0 33 2 0 16 chain 12827 chr3 198022430 + 166975926 166976087 L1P5 443 + 147 308 148943 161 chain 244190 chr3 198022430 + 166976721 166980164 L1PBa1 4058 - 18 4047 16545 42 1 0 17 44 37 21 14 9 19 2 0 12 3 0 5 9 5 22 3 1 106 3 1 42 1 0 29 1 0 7 1 0 114 5 0 116 1 0 179 0 1 77 0 2 28 4 3 29 0 658 501 0 1 25 7 8 34 0 1 131 5 9 86 1 0 556 1 0 21 0 1 98 2 1 326 5 2 10 39 32 37 38 13 113 34 47 15 0 1 142 7 0 32 0 1 37 17 8 113 1 0 4 13 7 9 1 0 25 chain 34177 chr3 198022430 + 166992302 166992750 LTR10G 522 + 0 447 77382 35 1 0 207 1 2 109 1 0 94 chain 535670 chr3 198022430 + 166993055 166999050 L1PA3long 6157 + 0 6156 3493 152 0 1 116 0 1 506 0 128 104 0 38 282 3 0 857 4 0 1910 0 4 1084 6 1 830 0 1 57 27 0 15 0 27 42 chain 499249 chr3 198022430 + 167007102 167013458 L1PA7 6471 + 6 6454 6877 90 17 5 85 4 13 41 4 14 196 3 18 257 34 50 201 2 19 772 5 6 352 0 1 25 0 1 559 1 2 107 0 1 267 8 12 106 0 1 404 4 5 446 0 2 44 1 4 22 0 1 150 1 0 292 1 2 342 11 12 22 2 1 124 1 0 119 8 9 162 0 1 228 0 4 18 1 0 34 0 1 43 7 6 336 0 2 234 0 12 71 0 1 77 0 1 15 chain 33520 chr3 198022430 + 167024839 167025282 L1PA13 3608 + 2642 3097 78369 139 1 8 218 5 9 34 0 1 46 chain 21588 chr3 198022430 + 167028213 167028563 THE1D 372 - 4 372 121817 95 0 1 48 68 85 139 chain 19763 chr3 198022430 + 167057453 167057744 L1PA8 5853 - 0 291 127925 93 1 0 19 2 1 42 14 13 4 1 0 68 5 9 42 chain 30822 chr3 198022430 + 167075479 167075814 L1PA3long 6157 + 5662 5997 82833 335 chain 13567 chr3 198022430 + 167075819 167075965 L1PA3long 6157 + 6011 6157 146103 146 chain 23549 chr3 198022430 + 167076447 167076748 AluSc8 310 + 5 309 112857 127 0 3 16 0 2 5 9 7 144 chain 211440 chr3 198022430 + 167106762 167109426 L1PA8 5853 - 0 2651 18402 93 2 1 18 2 1 45 8 7 8 1 0 72 2 0 44 1 0 480 0 2 4 0 1 63 0 6 17 0 4 235 0 1 292 25 6 115 8 0 135 0 1 144 0 4 17 0 1 164 1 2 668 chain 28400 chr3 198022430 + 167118400 167118821 MER4A1 472 - 19 472 91584 87 7 15 72 27 49 23 0 1 83 1 3 90 6 5 25 chain 6747 chr3 198022430 + 167127749 167127904 MER115 684 - 30 190 179346 65 60 65 30 chain 6110 chr3 198022430 + 167134838 167134972 L1PA14 3548 - 83 206 184345 10 6 0 41 1 0 4 19 17 15 4 2 34 chain 29950 chr3 198022430 + 167136062 167136449 L1PA8 5853 - 0 385 84964 43 0 4 46 1 0 17 1 0 64 2 1 70 2 0 44 1 0 96 chain 2784 chr3 198022430 + 167141123 167141158 HERVH-int 3825 + 757 791 228967 23 1 0 11 chain 2734 chr3 198022430 + 167148686 167148782 LTR7 482 + 115 263 229679 17 50 102 29 chain 321586 chr3 198022430 + 167149476 167153257 HERVH-int 3825 + 0 3825 12535 333 1 0 34 1 2 114 0 56 31 1 0 7 1 0 15 4 0 11 7 1 14 1 0 12 4 1 14 12 11 41 1 0 59 1 2 9 0 2 9 0 1 2336 0 2 708 chain 28628 chr3 198022430 + 167176856 167177161 AluYa5 310 - 5 310 90619 305 chain 14509 chr3 198022430 + 167202067 167202237 L1PA5 6144 + 5967 6137 142861 170 chain 40356 chr3 198022430 + 167202593 167203146 L1PA8 5853 + 5303 5852 68796 41 6 9 210 2 1 46 2 0 69 17 14 7 0 1 39 2 1 19 2 1 91 chain 64695 chr3 198022430 + 167221120 167221883 LTR17 781 - 0 781 50699 142 0 8 303 0 1 199 0 9 119 chain 93719 chr3 198022430 + 167235524 167236562 L1PA3long 6157 - 0 1039 38431 258 0 1 780 chain 157728 chr3 198022430 + 167241188 167243194 L1PA8 5853 - 7 1997 23630 86 1 0 17 1 0 42 1 2 10 9 7 74 2 0 44 1 0 28 0 1 157 1 0 293 1 2 53 21 18 74 8 0 1082 chain 13034 chr3 198022430 + 167263366 167263650 L1PB1 5432 + 5172 5430 148106 40 2 1 6 1 0 18 1 0 42 2 1 16 3 0 12 9 0 15 12 9 14 3 1 23 1 0 20 8 7 7 1 0 14 1 0 8 1 0 4 chain 157748 chr3 198022430 + 167266491 167268265 L1PA5 6144 - 9 1783 23627 1774 chain 202985 chr3 198022430 + 167312452 167314668 L1PA3long 6157 + 3941 6156 18996 2211 1 0 4 chain 17812 chr3 198022430 + 167348848 167349065 L1PA6 6164 + 5949 6161 133364 95 1 0 110 4 0 7 chain 142192 chr3 198022430 + 167353785 167355754 L1PB1 5432 - 21 1933 25784 7 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 15 1 0 44 1 0 67 25 19 4 1 0 13 1 0 17 48 14 84 6 8 4 0 1 222 0 1 157 3 0 159 0 1 646 0 2 55 5 0 31 8 7 80 0 10 136 chain 29208 chr3 198022430 + 167381616 167381921 AluYa5 310 - 5 310 88012 305 chain 4178 chr3 198022430 + 167512228 167512298 L1PB1 5432 - 10 78 204845 31 5 4 17 1 0 16 chain 74627 chr3 198022430 + 167516844 167517712 L1PA7 6471 - 13 888 46196 697 3 0 133 0 6 19 0 4 16 chain 123653 chr3 198022430 + 167519726 167521074 L1PA3long 6157 + 4808 6157 29828 1201 0 1 147 chain 65193 chr3 198022430 + 167522928 167523715 L1PA8 5853 - 590 1387 50477 179 0 2 73 1 4 51 0 1 28 0 1 251 1 0 188 0 4 15 chain 43840 chr3 198022430 + 167523715 167524280 L1PA8 5853 + 5299 5853 64398 265 1 0 45 2 0 73 1 0 6 3 0 6 1 0 40 1 0 9 1 0 17 1 0 93 chain 9426 chr3 198022430 + 167581216 167581378 MER30 238 - 6 177 163426 26 10 7 54 6 7 13 4 15 49 chain 5223 chr3 198022430 + 167639334 167639421 L1PA16 3655 + 3500 3585 192805 40 5 6 33 3 0 6 chain 151186 chr3 198022430 + 167671084 167673859 L1PB1 5432 - 5 2153 24452 5 3 0 18 1 0 13 1 0 19 1 0 12 0 1 12 18 15 5 2 0 30 14 1 13 7 6 25 0 2 8 6 5 16 2 1 50 30 23 13 1 0 20 16 14 186 1 0 28 0 1 148 0 1 104 4 0 190 9 7 216 316 0 429 1 0 47 271 23 75 0 3 28 0 2 85 54 25 86 0 1 136 chain 546344 chr3 198022430 + 167728820 167734843 L1PA2 6032 + 2 6028 1904 70 1 2 183 1 0 683 9 11 83 0 3 1625 0 1 875 0 1 2482 4 0 7 chain 19347 chr3 198022430 + 167764111 167764316 SVA_D 2077 - 21 226 129082 205 chain 19023 chr3 198022430 + 167772558 167772901 THE1B 368 + 0 368 130058 44 10 25 38 15 16 49 1 0 15 46 56 125 chain 118027 chr3 198022430 + 167772901 167774772 THE1B-int 1605 + 0 1605 31797 101 0 1 252 0 1 38 313 0 33 1 26 46 2 1 450 0 1 90 22 42 253 5 6 5 1 0 259 chain 26843 chr3 198022430 + 167793074 167793363 AluYa5 310 - 1 288 96832 183 2 0 104 chain 4610 chr3 198022430 + 167843638 167843698 L1MA9 1812 - 584 643 199507 44 1 0 15 chain 515191 chr3 198022430 + 167846084 167852228 L1PA6 6164 + 0 6162 5647 25 0 1 125 5 8 212 4 12 16 5 4 9 1 0 97 2 1 738 1 0 339 0 1 590 1 0 155 0 1 855 0 1 332 2 1 180 1 0 491 1 0 4 0 1 163 0 4 408 1 0 66 16 10 554 0 13 745 chain 12337 chr3 198022430 + 167852729 167852968 THE1B 368 + 0 292 150870 68 28 42 59 1 0 29 0 3 8 28 65 18 chain 8425 chr3 198022430 + 167861147 167861304 L1PB4 2604 - 34 195 168710 14 6 7 17 3 4 24 15 17 78 chain 3226 chr3 198022430 + 167887876 167887921 L1MD2 1676 - 1596 1637 220485 9 4 0 32 chain 8982 chr3 198022430 + 167904111 167904341 L1MB5 1630 + 1364 1589 165702 28 1 0 61 12 0 12 84 92 32 chain 92400 chr3 198022430 + 167926894 167927969 MER11C 1089 - 16 1089 38845 364 0 2 114 5 1 592 chain 23343 chr3 198022430 + 167972610 167972975 THE1D 372 - 0 365 113965 144 51 48 18 4 7 148 chain 19892 chr3 198022430 + 167982136 167982433 AluSp 311 + 0 294 127509 52 7 6 74 2 0 88 17 18 43 2 1 12 chain 7304 chr3 198022430 + 167985159 167985288 L1PB4 2604 + 2443 2572 175410 30 0 1 60 26 25 13 chain 21889 chr3 198022430 + 168024845 168025118 L1PA7 6471 - 6 275 120667 6 4 0 263 chain 5148 chr3 198022430 + 168035335 168035402 X8_LINE 244 + 164 231 193570 67 chain 149144 chr3 198022430 + 168069216 168070866 L1P1 4361 - 353 2003 24736 1650 chain 189235 chr3 198022430 + 168070884 168072903 L1HS 6032 + 4013 6032 20123 2019 chain 13893 chr3 198022430 + 168082112 168082258 AluYd8 298 - 8 154 144944 146 chain 45165 chr3 198022430 + 168105672 168106235 L1PA6 6164 + 5546 6147 62859 38 0 21 227 1 0 39 1 0 4 1 5 76 0 6 42 3 0 6 3 7 25 0 8 97 chain 13791 chr3 198022430 + 168109476 168109817 L1PB1 5432 - 8 318 145300 4 1 0 16 1 0 13 1 0 21 1 0 24 24 19 16 9 0 11 2 0 4 1 0 16 1 0 12 0 1 18 37 35 47 2 0 9 26 20 24 chain 65416 chr3 198022430 + 168126241 168126984 L1PA4 6152 + 5415 6152 50370 721 3 0 10 3 0 6 chain 55103 chr3 198022430 + 168138550 168139185 L1P1 4361 + 1534 2169 55639 635 chain 18375 chr3 198022430 + 168171736 168172055 THE1B 368 - 0 352 131863 49 5 13 10 1 0 51 40 51 19 1 0 91 2 3 22 0 15 28 chain 26408 chr3 198022430 + 168236431 168236785 THE1C 375 - 0 357 98383 25 1 0 13 1 2 158 1 0 24 7 11 124 chain 34613 chr3 198022430 + 168287684 168288085 L1PA3long 6157 + 5753 6155 76740 253 1 2 147 chain 11084 chr3 198022430 + 168323872 168324001 L1PA6 6164 - 161 290 155868 129 chain 24878 chr3 198022430 + 168324587 168324877 L1PA6 6164 - 2 290 105466 8 2 0 280 chain 3126 chr3 198022430 + 168328207 168328242 LTR37B 484 + 443 478 222428 35 chain 147037 chr3 198022430 + 168356890 168358562 L1PA5 6144 + 4466 6140 25015 295 4 5 531 0 4 375 4 0 283 0 1 180 chain 4695 chr3 198022430 + 168373610 168373699 MER5A1 166 - 16 107 198582 22 2 3 40 13 14 12 chain 82392 chr3 198022430 + 168374684 168375584 L1PA3long 6157 - 0 899 42590 259 1 0 640 chain 104359 chr3 198022430 + 168375595 168376760 L1PA3long 6157 + 4082 5250 35651 75 0 3 1090 chain 24773 chr3 198022430 + 168394362 168394844 L1PB1 5432 - 5 452 106043 8 2 0 4 1 0 11 1 0 13 1 0 19 1 0 24 2 0 13 11 8 19 15 6 6 3 0 16 0 1 43 21 19 50 2 0 10 6 2 8 1 0 13 1 0 20 18 14 37 0 1 82 chain 78834 chr3 198022430 + 168416217 168417191 LTR13 1007 - 12 1007 44132 182 0 1 106 0 5 7 2 0 9 4 6 13 0 10 122 0 4 141 11 12 377 chain 33329 chr3 198022430 + 168463797 168464219 LTR12F 595 + 0 567 78688 24 0 2 46 0 143 352 chain 21390 chr3 198022430 + 168468116 168468458 L1PA8 5853 + 5514 5853 122540 8 0 3 39 1 0 44 2 0 22 0 1 47 41 39 27 1 0 16 2 1 92 chain 20890 chr3 198022430 + 168468907 168469249 L1PA8 5853 - 0 339 124318 92 2 1 19 2 1 23 41 39 47 0 1 22 2 0 44 1 0 39 0 3 8 chain 3036 chr3 198022430 + 168473221 168473266 MSTC 436 + 390 436 224277 27 1 2 17 chain 69321 chr3 198022430 + 168474916 168475728 L1PA5 6144 - 2 815 48671 144 1 2 336 1 0 94 0 1 236 chain 125769 chr3 198022430 + 168475728 168477181 L1P1 4361 + 2892 4341 29166 517 1 0 739 1 0 157 1 0 23 2 1 12 chain 496570 chr3 198022430 + 168482650 168490455 L1PA3long 6157 - 410 6157 7032 617 5 6 1853 12 16 71 0 1 6 0 1 2272 0 128 453 2194 0 167 3 4 152 chain 195733 chr3 198022430 + 168488004 168490133 L1PA2 6032 - 0 2151 19487 1375 0 22 754 chain 58471 chr3 198022430 + 168494456 168495218 THE1B-int 1605 + 0 789 53713 11 5 7 412 1 26 232 6 1 6 0 5 89 chain 109134 chr3 198022430 + 168497746 168499193 LTR12C 1709 + 0 1709 34407 214 9 10 38 33 34 40 0 43 66 1 2 20 15 0 34 14 15 28 0 1 105 0 119 68 1 0 23 0 2 212 0 2 36 1 0 5 3 1 106 0 4 177 0 4 19 0 102 179 chain 9082 chr3 198022430 + 168571811 168571974 L1MA4 2864 - 2566 2733 165151 14 4 7 71 26 27 48 chain 22362 chr3 198022430 + 168587145 168587411 AluSp 311 + 16 282 118662 266 chain 121806 chr3 198022430 + 168646986 168648593 THE1A-int 1579 - 0 1579 30441 8 0 1 247 0 1 326 52 14 99 0 3 211 0 8 6 5 1 86 0 1 567 chain 19682 chr3 198022430 + 168648594 168651347 THE1A 353 - 1 353 128156 92 0 1 17 2410 9 99 25 26 14 1 0 46 0 1 32 2 0 15 chain 42393 chr3 198022430 + 168681256 168681805 MLT2A2 560 - 0 560 66159 70 0 1 76 3 14 215 1 0 184 chain 8890 chr3 198022430 + 168685952 168686067 MSTC-int 1625 - 30 150 166188 96 0 5 19 chain 27595 chr3 198022430 + 168697238 168697746 L1PA11 4918 - 289 749 94360 18 20 13 5 1 0 9 1 0 4 8 2 11 2 0 6 7 0 7 1 0 11 50 37 18 1 0 13 2 0 67 2 1 12 1 0 63 5 0 163 chain 72767 chr3 198022430 + 168723428 168724242 L1P1 4361 - 347 1161 47141 814 chain 42506 chr3 198022430 + 168724242 168724715 L1PA4 6152 + 5675 6152 66006 223 1 0 243 0 5 6 chain 22877 chr3 198022430 + 168728955 168729299 L1M1 2793 + 1145 1475 116200 37 1 0 68 4 0 12 1 0 7 4 0 6 3 0 6 7 6 188 chain 5015 chr3 198022430 + 168735259 168735359 MLT1A0 366 - 260 355 194975 31 17 18 32 6 0 14 chain 32408 chr3 198022430 + 168745430 168745779 L1PA2 6032 + 5681 6030 80191 349 chain 3986 chr3 198022430 + 168878217 168878262 L1MA3 4352 + 4121 4166 207593 45 chain 103686 chr3 198022430 + 168894132 168895366 L1PA8A 6298 + 5057 6290 35806 432 2 1 43 1 3 540 2 0 214 chain 21382 chr3 198022430 + 168912014 168912254 L1PA4 6152 + 5903 6143 122577 240 chain 129252 chr3 198022430 + 168926421 168928130 L1PA8 5853 + 4132 5848 28255 48 0 1 42 0 3 83 0 1 94 6 1 154 5 6 59 0 1 4 1 0 52 10 0 329 2 0 37 1 3 309 0 1 204 1 0 25 2 0 19 2 0 23 0 23 24 2 1 20 2 3 27 2 1 10 2 1 19 1 0 88 chain 30859 chr3 198022430 + 168940918 168941283 L1PA5 6144 - 0 358 82753 140 7 0 218 chain 17562 chr3 198022430 + 168989311 168989538 L1PA6 6164 + 5919 6147 134092 26 9 10 192 chain 127970 chr3 198022430 + 169035523 169037357 L1PA7 6471 + 4921 6469 28574 30 1 0 4 0 1 252 0 1 58 0 2 333 0 4 15 1 0 376 307 0 134 0 1 189 0 1 74 5 18 55 chain 3724 chr3 198022430 + 169078016 169078057 L1HS 6032 - 5899 5940 211563 41 chain 262825 chr3 198022430 + 169092950 169096108 L1PA7 6471 + 3296 6458 15542 153 1 0 48 3 0 31 13 11 127 0 1 529 0 1 621 0 1 95 0 1 69 0 1 129 1 0 208 7 8 143 0 5 94 0 1 40 2 1 844 chain 315726 chr3 198022430 + 169130848 169136371 L1P3 4156 + 3 4139 12777 246 22 21 47 8 7 68 7 0 17 27 2 241 0 1 568 0 1 47 8 9 6 1 0 10 6 11 290 0 1 61 1 2 186 1 2 579 0 3 199 1 2 90 0 6 303 14 14 445 8 6 32 13 9 158 1367 0 372 0 3 39 2 0 7 2 1 24 chain 121605 chr3 198022430 + 169134570 169135905 L1PA3long 6157 + 4821 6157 30506 1002 0 1 333 chain 23962 chr3 198022430 + 169154033 169154328 AluSp 311 - 7 302 110555 295 chain 26101 chr3 198022430 + 169162088 169162431 THE1A 353 + 0 342 99617 109 15 14 219 chain 125164 chr3 198022430 + 169162433 169163976 THE1A-int 1579 + 0 1579 29337 46 1 12 487 1 23 101 1 2 533 0 1 66 0 1 307 chain 25270 chr3 198022430 + 169163976 169164308 THE1A 353 + 0 353 103370 110 1 0 99 7 29 98 0 1 7 1 0 9 chain 35130 chr3 198022430 + 169262346 169262824 L1PA8 5853 + 5382 5853 76020 182 10 9 37 2 0 69 1 0 9 4 3 49 2 1 19 2 1 92 chain 26038 chr3 198022430 + 169268608 169268879 AluYa5 310 - 8 279 99866 271 chain 412292 chr3 198022430 + 169285713 169290775 L1PA7 6471 + 3 6469 9739 327 3 0 5 9 12 64 0 1 22 5 7 372 3 1387 74 7 5 64 0 1 297 1 0 115 0 12 393 14 16 78 6 0 3 7 0 122 0 1 46 8 13 32 0 2 153 3 0 635 0 1 239 5 3 749 1 3 45 0 1 47 1 0 267 5 4 519 0 15 67 11 9 238 chain 26654 chr3 198022430 + 169349252 169349543 L1PA3long 6157 - 1 292 97476 291 chain 17790 chr3 198022430 + 169363811 169364003 L1PA5 6144 - 279 471 133443 192 chain 19049 chr3 198022430 + 169364003 169364253 L1PA5 6144 + 5891 6136 129972 99 21 16 130 chain 37743 chr3 198022430 + 169368776 169369269 L1PB 1623 - 553 1043 72494 160 12 6 187 5 7 100 0 1 29 chain 13430 chr3 198022430 + 169369283 169369541 L1PB1 5432 + 5158 5404 146573 11 2 0 61 9 8 43 1 0 12 0 6 9 9 0 9 0 2 8 10 7 12 2 0 24 1 0 14 8 7 13 chain 19337 chr3 198022430 + 169394409 169394620 L1PA3long 6157 - 0 211 129121 211 chain 560133 chr3 198022430 + 169397275 169403305 L1PA2 6032 + 1 6032 347 3897 0 1 2133 chain 206577 chr3 198022430 + 169422846 169425150 L1PA5 6144 + 3833 6137 18751 397 1 0 707 0 1 966 0 1 84 1 0 148 chain 60783 chr3 198022430 + 169433840 169434526 L1PA5 6144 - 2199 2885 52277 4 1 0 82 0 1 599 chain 191736 chr3 198022430 + 169434526 169436730 L1PA5 6144 + 3931 6143 19891 279 0 2 63 0 1 410 1 2 4 1 0 605 0 4 79 1 2 761 chain 47556 chr3 198022430 + 169437414 169437974 L1PA6 6164 - 2 562 60805 9 1 0 326 1 2 223 chain 9113 chr3 198022430 + 169437974 169438081 U6 107 - 0 107 164999 107 chain 16561 chr3 198022430 + 169439225 169439431 L1PA10 4194 - 44 247 136767 33 4 1 169 chain 83676 chr3 198022430 + 169449110 169450245 L1M1 2793 + 833 1956 42042 6 1 0 54 15 12 98 1 0 6 1 2 12 1 0 4 0 1 151 1 0 72 9 5 13 7 0 86 0 4 85 4 5 69 1 0 20 0 1 121 3 2 294 chain 34362 chr3 198022430 + 169450980 169451388 L1P1 4361 - 20 425 76626 12 2 1 23 1 0 157 1 0 212 chain 250043 chr3 198022430 + 169451388 169454278 L1PA6 6164 + 3276 6159 16253 906 4 0 3 10 0 713 1 0 4 0 1 55 0 1 334 0 4 534 0 1 169 3 4 154 chain 62929 chr3 198022430 + 169454296 169455319 L1MA1 4479 + 3157 4190 51477 42 0 1 16 1 13 22 1 0 6 12 6 126 3 1 128 1 0 187 20 19 15 2 0 16 1 0 70 1 0 20 2 0 14 1 0 41 35 28 16 12 8 80 12 18 28 1 0 29 2 0 18 7 38 9 8 0 18 chain 28332 chr3 198022430 + 169463014 169463332 AluYb8 318 - 0 318 91829 46 0 2 138 2 0 132 chain 27071 chr3 198022430 + 169474435 169474777 THE1A 353 - 0 340 96032 159 1 0 84 1 0 97 chain 7193 chr3 198022430 + 169481850 169481937 MER85 139 + 4 95 176120 43 0 4 44 chain 4584 chr3 198022430 + 169490017 169490066 tRNA-Val-GTY 66 + 0 49 199822 49 chain 29116 chr3 198022430 + 169531632 169532192 LTR1 825 - 42 612 88477 79 20 12 35 5 0 115 6 5 39 1 0 34 3 0 23 3 0 12 1 0 4 0 1 44 90 77 17 8 52 21 chain 18428 chr3 198022430 + 169535398 169535680 L1M1 2793 - 98 370 131697 10 1 0 12 5 4 41 1 0 165 12 8 22 3 0 10 chain 25898 chr3 198022430 + 169569914 169570219 AluY 311 + 11 311 100447 9 1 0 103 7 3 185 chain 24872 chr3 198022430 + 169578858 169579154 AluSg7 307 - 9 307 105505 40 0 1 125 1 2 130 chain 23082 chr3 198022430 + 169596110 169596404 AluSp 311 + 1 311 115227 47 8 23 187 0 1 52 chain 6514 chr3 198022430 + 169620576 169620675 L1MB2 1706 + 794 890 181130 74 12 9 13 chain 24729 chr3 198022430 + 169627454 169627749 AluY 311 + 0 289 106277 126 6 0 163 chain 4968 chr3 198022430 + 169643092 169643156 MER41B 635 + 482 547 195503 27 1 2 36 chain 26713 chr3 198022430 + 169669232 169669520 AluYb8 318 - 0 287 97283 192 1 0 95 chain 4776 chr3 198022430 + 169673587 169673641 MSTD 398 - 51 105 197623 54 chain 8942 chr3 198022430 + 169680914 169681021 MER2 342 + 141 248 165908 107 chain 5395 chr3 198022430 + 169717639 169717700 MSTD 398 - 0 61 191032 61 chain 17657 chr3 198022430 + 169722358 169722562 L1PA6 6164 - 8 211 133819 144 1 0 59 chain 27784 chr3 198022430 + 169731756 169732171 Tigger3b 1229 + 207 630 93756 6 0 1 23 0 6 48 1 0 38 8 5 4 0 1 213 26 30 48 chain 48547 chr3 198022430 + 169742010 169742747 MER4E 760 + 0 753 60076 22 1 3 126 79 79 139 0 2 11 0 26 43 5 4 74 13 0 224 chain 1305 chr3 198022430 + 169749032 169749160 MER49 923 - 90 223 120067 15 0 1 41 23 27 49 chain 45162 chr3 198022430 + 169749160 169749676 MER9a3 513 - 0 513 62863 121 3 0 392 chain 7024 chr3 198022430 + 169750044 169750277 MER4A1 472 - 0 226 97394 67 23 19 78 15 12 50 chain 31523 chr3 198022430 + 169750284 169750700 LTR7B 505 + 0 491 81606 108 0 10 57 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 102 chain 6481 chr3 198022430 + 169750714 169750929 MER4A1 472 - 249 472 97394 69 39 45 92 0 2 15 chain 2447 chr3 198022430 + 169750954 169751194 MER49 923 - 670 917 120067 91 0 3 19 0 1 56 8 10 40 0 1 26 chain 14676 chr3 198022430 + 169757763 169757977 L1PA8 5853 + 5642 5853 142341 27 11 10 11 1 0 50 2 1 19 1 0 44 0 1 48 chain 9967 chr3 198022430 + 169765364 169765599 L1PB3 3668 + 3368 3528 160739 20 4 3 87 81 8 17 2 1 24 chain 5645 chr3 198022430 + 169772273 169772485 L1MB3 1562 - 10 197 188610 22 11 10 26 17 13 21 81 61 34 chain 31335 chr3 198022430 + 169795207 169795652 LTR22A 463 + 8 463 81922 64 0 10 123 0 1 130 45 44 83 chain 5872 chr3 198022430 + 169796545 169796619 HERVK22-int 3844 + 3765 3844 186459 64 0 5 10 chain 34969 chr3 198022430 + 169796622 169797078 LTR22A 463 + 6 463 76231 77 1 0 29 12 15 225 1 0 111 chain 27798 chr3 198022430 + 169895928 169896218 AluYd8 298 - 8 298 93706 290 chain 24315 chr3 198022430 + 169927853 169928152 AluY 311 + 4 302 108574 128 0 1 117 4 0 27 1 3 22 chain 23061 chr3 198022430 + 169941706 169941972 L1PA4 6152 - 0 267 115346 113 0 1 153 chain 17781 chr3 198022430 + 169959690 169959904 AluSp 311 + 57 289 133474 18 0 18 196 chain 8310 chr3 198022430 + 169962569 169962666 HY3 101 + 0 99 169337 69 0 2 28 chain 27756 chr3 198022430 + 169980676 169980971 AluYg6 310 + 0 295 93847 295 chain 10182 chr3 198022430 + 170010398 170010512 AluYc 301 + 172 286 159708 114 chain 33481 chr3 198022430 + 170033476 170033971 MER41-int 2638 - 215 707 78439 13 0 5 105 0 1 58 13 15 47 37 26 121 1 0 4 0 1 96 chain 41544 chr3 198022430 + 170037749 170038613 MER41A 554 - 0 554 67231 38 0 2 17 0 4 78 326 11 239 1 0 165 chain 5586 chr3 198022430 + 170046002 170046107 LTR12C 1709 + 654 1037 189219 59 11 248 16 1 42 18 chain 111320 chr3 198022430 + 170049657 170050979 L1PA6 6164 - 7 1294 33856 329 1 0 320 41 0 104 0 1 79 0 6 448 chain 30486 chr3 198022430 + 170052219 170052921 MER41A 554 - 150 532 83460 228 320 0 154 chain 115364 chr3 198022430 + 170054489 170056599 PABL_A-int 1935 - 65 1836 32656 15 1 0 18 4 3 71 333 0 36 1 0 102 0 1 18 1 0 59 1 0 20 18 16 164 8 7 52 0 1 17 0 5 87 0 2 13 5 0 7 17 0 8 30 61 13 1 0 37 5 4 168 0 1 23 1 4 43 0 1 239 18 7 128 6 4 6 4 0 34 7 11 24 14 18 178 23 13 32 chain 35432 chr3 198022430 + 170060773 170061945 MER41A 554 - 0 518 75638 53 707 54 50 1 0 144 0 1 63 5 4 149 chain 23446 chr3 198022430 + 170061203 170061531 AluSp 311 + 11 307 113398 139 0 1 22 41 8 126 chain 21417 chr3 198022430 + 170069959 170070223 AluSc 308 - 43 307 122455 264 chain 2848 chr3 198022430 + 170089604 170089645 MER112 246 + 34 82 227873 27 0 3 8 0 4 6 chain 11118 chr3 198022430 + 170117813 170118060 L1MA8 2339 - 94 331 155741 8 2 0 39 28 23 15 2 3 38 12 0 14 16 24 73 chain 28585 chr3 198022430 + 170119580 170119883 AluYa5 310 + 0 302 90806 132 1 0 170 chain 12382 chr3 198022430 + 170126869 170127032 Tigger1 2417 + 2079 2240 150705 135 2 0 26 chain 22853 chr3 198022430 + 170164719 170164980 L1PA4 6152 + 5886 6152 116320 255 0 5 6 chain 48204 chr3 198022430 + 170173207 170174236 L1PA16 3655 - 113 823 60313 68 11 10 117 1 0 44 21 19 18 18 13 49 310 0 131 10 12 144 1 0 18 1 0 67 chain 18899 chr3 198022430 + 170206810 170207092 L1MA1 4479 + 3927 4190 130369 17 1 0 8 3 0 126 1 0 29 2 0 35 1 0 9 1 0 6 4 2 13 8 0 18 chain 23958 chr3 198022430 + 170216782 170217054 AluY 311 + 39 311 110575 272 chain 24745 chr3 198022430 + 170228910 170229205 AluSp 311 + 0 301 106193 64 0 6 231 chain 21706 chr3 198022430 + 170230443 170230678 AluYa5 310 - 2 237 121367 235 chain 2374 chr3 198022430 + 170234884 170234922 MIRb 242 + 167 215 234421 20 0 12 11 2 0 5 chain 3630 chr3 198022430 + 170247842 170247910 MADE1 96 - 0 92 213154 24 15 39 29 chain 10039 chr3 198022430 + 170273343 170273551 Tigger3a 397 - 75 343 160388 102 34 35 23 28 87 21 chain 62716 chr3 198022430 + 170279476 170280424 L1PB1 5432 + 4514 5427 51581 117 4 0 118 0 1 205 0 1 78 6 5 64 13 11 23 1 0 10 2 1 8 2 0 3 2 0 8 2 0 70 8 7 34 2 1 17 13 1 30 2 0 5 1 0 14 2 0 24 1 0 52 2 0 5 chain 271731 chr3 198022430 + 170284799 170287784 L1PA3long 6157 - 0 2986 15097 849 0 1 523 3 2 1225 0 1 385 chain 30009 chr3 198022430 + 170295125 170295442 AluYb8 318 + 0 317 84779 317 chain 510326 chr3 198022430 + 170333104 170339696 L1PA7 6471 - 2 6263 6137 330 0 3 519 0 3 75 0 1 139 6 1 117 321 0 72 1 2 295 16 1 61 2 12 21 0 4 575 0 1 90 24 20 288 12 3 175 0 4 45 0 1 8 0 1 99 1 0 191 1 2 175 0 1 30 0 4 405 4 1 60 0 2 879 2 0 12 0 7 23 19 3 196 0 1 182 0 1 168 0 1 441 22 20 490 chain 6754 chr3 198022430 + 170354438 170354530 MER20 218 + 5 96 179290 85 1 0 6 chain 22009 chr3 198022430 + 170362088 170362445 THE1C 375 + 0 375 120189 46 63 79 17 0 4 26 2 0 14 0 1 163 1 0 25 chain 468084 chr3 198022430 + 170362905 170368780 L1PA8 5853 - 0 5803 8106 90 4 3 16 1 0 50 4 1 14 5 4 67 2 0 44 1 0 116 7 0 439 2 0 423 0 1 35 1 2 249 15 0 48 0 5 2153 2 1 60 1 3 294 1 0 988 0 1 101 4 7 330 18 6 163 1 2 29 49 13 13 2 1 9 2 0 22 chain 545501 chr3 198022430 + 170380177 170386315 L1PA4 6152 - 0 6149 2013 6 3 0 838 0 23 2049 1 2 1229 0 1 296 0 3 461 0 1 160 0 3 246 17 0 258 1 0 573 chain 26593 chr3 198022430 + 170389965 170390376 LTR7 482 - 0 482 97688 174 0 1 15 0 31 33 3 4 39 51 0 21 7 96 68 chain 307148 chr3 198022430 + 170391632 170395637 HERVH-int 3825 - 0 3825 13125 809 1 0 14 186 28 378 1 0 4 0 1 492 4 9 404 0 5 235 8 9 355 0 1 298 5 4 59 21 0 23 2 1 10 2 0 30 31 25 27 7 1 13 4 0 10 2 1 9 1 0 24 0 1 4 1 0 6 1 0 302 10 21 212 chain 30708 chr3 198022430 + 170395639 170396051 LTR7 482 - 0 482 83019 174 0 1 27 1 0 16 8 40 109 8 46 69 chain 35834 chr3 198022430 + 170399559 170400046 LTR7 482 - 13 482 75086 36 12 14 158 0 31 52 51 0 178 chain 43234 chr3 198022430 + 170402814 170403395 HERVH-int 3825 - 0 795 65134 223 0 2 151 1 4 6 3 0 101 8 218 39 9 11 40 chain 156176 chr3 198022430 + 170403395 170405321 HERVH-int 3825 - 797 2717 23836 606 9 8 5 0 1 307 13 18 17 0 2 38 0 3 243 0 1 88 0 5 216 1 0 13 0 2 9 7 8 7 9 0 207 7 0 6 8 0 110 chain 35074 chr3 198022430 + 170405326 170405930 HERVH-int 3825 - 2723 3195 76086 318 2 0 4 0 1 50 1 0 9 108 0 23 1 0 25 50 29 13 chain 2798 chr3 198022430 + 170405997 170406043 HERVH-int 3825 - 3233 3277 228764 12 2 1 9 1 0 22 chain 47412 chr3 198022430 + 170406044 170406593 HERVH-int 3825 - 3279 3825 60893 5 1 0 11 1 0 197 1 0 333 chain 36502 chr3 198022430 + 170406595 170407095 LTR7 482 - 0 482 74237 49 16 18 154 0 31 52 51 0 178 chain 5943 chr3 198022430 + 170417135 170417206 MLT1D 503 - 184 255 185754 71 chain 25935 chr3 198022430 + 170417476 170417853 THE1C 375 - 0 375 100278 25 1 0 144 24 27 36 5 1 142 chain 21341 chr3 198022430 + 170419011 170419293 AluSp 311 + 20 299 122716 87 1 0 12 0 1 4 7 4 171 chain 68305 chr3 198022430 + 170422078 170422886 L1PA7 6471 - 13 821 49120 142 6 3 174 0 3 486 chain 7539 chr3 198022430 + 170436756 170436843 L1PA7 6471 - 293 380 173933 87 chain 22277 chr3 198022430 + 170440575 170440855 AluY 311 + 0 285 119005 47 4 10 120 1 0 108 chain 4288 chr3 198022430 + 170507798 170507851 MLT1C 463 + 402 455 203367 53 chain 32195 chr3 198022430 + 170517921 170518510 L1PB1 5432 - 10 573 80529 18 1 0 13 1 0 21 1 0 20 63 48 6 2 0 16 1 0 44 6 5 10 2 1 50 20 14 12 1 0 6 1 0 24 12 16 32 5 6 201 chain 82275 chr3 198022430 + 170522383 170523588 L1PB1 5432 + 4259 5420 42646 96 1 0 30 1 0 214 0 10 8 26 7 478 2 3 12 3 0 17 2 0 13 27 20 53 2 1 16 1 0 41 7 6 12 3 0 17 12 4 10 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 chain 9301 chr3 198022430 + 170530823 170531164 MLT1B 390 + 65 390 164057 19 180 164 10 3 0 5 0 3 7 5 6 86 1 0 25 chain 30279 chr3 198022430 + 170535403 170535805 LTR7 482 - 9 482 83998 181 3 35 32 0 1 109 9 47 68 chain 309060 chr3 198022430 + 170537065 170541142 HERVH-int 3825 - 0 3825 13044 809 1 0 43 165 0 115 7 0 7 0 7 743 13 18 16 0 1 43 0 3 328 1 6 216 1 0 13 0 2 9 7 8 11 9 0 201 15 0 447 1 0 50 1 0 5 0 1 3 21 0 23 46 1 10 46 0 30 1 0 25 16 44 7 1 0 10 1 0 24 0 1 4 1 0 6 1 0 312 0 11 212 chain 13338 chr3 198022430 + 170564883 170565094 L1PA8 5853 - 0 208 146940 93 1 0 19 2 1 48 5 4 9 1 0 13 1 0 4 4 6 11 chain 88304 chr3 198022430 + 170577865 170578869 LTR13 1007 + 0 1007 40262 304 1 0 77 2 3 451 0 3 169 chain 551158 chr3 198022430 + 170596345 170602373 L1PA2 6032 - 2 6030 1293 12 1 0 6 1 0 2253 1 0 2436 3 5 406 1 0 227 0 3 426 1 0 254 chain 23905 chr3 198022430 + 170616111 170616477 THE1D 372 + 0 372 110882 157 62 67 89 0 1 58 chain 41822 chr3 198022430 + 170631036 170632063 MER4A 717 - 4 717 66863 63 485 157 457 0 14 22 chain 113344 chr3 198022430 + 170636074 170637601 THE1B-int 1605 + 0 1604 33265 118 1 0 4 0 1 263 9 73 20 1 2 5 1 0 12 11 12 227 20 18 32 22 21 112 1 10 131 0 6 111 1 0 315 0 1 110 chain 189051 chr3 198022430 + 170637966 170640645 L1PREC2 3366 + 227 2946 20140 5 1 0 11 3 2 12 3 1 28 2 0 32 0 1 74 8 7 65 6 3 184 0 4 211 8 10 433 10 20 13 0 1 123 0 40 263 1 4 304 0 3 13 0 1 140 0 1 211 1 0 172 7 10 86 0 3 34 3 1 46 9 8 43 1 0 4 71 56 10 4 2 24 chain 135952 chr3 198022430 + 170640753 170642317 SVA_C 1631 + 0 1631 26844 16 2 0 7 1 0 274 0 1 290 0 3 256 8 33 82 14 59 593 4 0 17 chain 478732 chr3 198022430 + 170642728 170648059 L1PA3long 6157 - 0 5344 7774 887 3 14 69 4 5 2011 1 0 61 0 1 2068 0 1 227 chain 524797 chr3 198022430 + 170650714 170656861 L1PA5 6144 - 6 6144 4703 260 8 1 583 1 0 672 1 0 386 0 3 462 0 1 95 1 0 390 0 1 29 0 2 95 2 0 7 1 0 835 0 3 607 1 0 288 0 1 245 16 7 247 0 1 270 0 2 645 chain 19803 chr3 198022430 + 170661787 170662128 MLT2A2 560 - 109 559 127807 38 0 11 12 4 102 37 0 1 18 65 64 167 chain 707 chr3 198022430 + 170665666 170665707 LTR12C 1709 + 955 1037 138737 28 1 42 12 chain 25985 chr3 198022430 + 170666067 170666375 AluSp 311 + 1 305 100073 19 2 0 112 2 0 173 chain 3640 chr3 198022430 + 170666375 170666586 LTR12C 1709 + 1398 1709 138737 41 0 101 79 7 6 84 chain 24086 chr3 198022430 + 170673896 170674411 L1PA11 4918 - 289 785 109827 18 144 115 8 1 0 16 2 0 74 6 5 55 4 7 14 0 4 12 3 6 74 1 4 71 0 1 12 chain 3315 chr3 198022430 + 170675421 170675463 MSTD 398 + 116 158 218670 42 chain 492815 chr3 198022430 + 170686933 170693521 L1PA7 6471 - 1 6471 7231 187 9 10 53 2 0 73 320 0 106 1 0 420 1 0 95 0 10 561 1 0 40 0 1 139 0 3 101 0 8 393 0 1 260 1 0 73 0 2 360 0 3 68 1 0 175 10 139 73 0 1 11 0 4 463 1 2 78 1 0 215 14 21 93 0 4 372 0 3 72 6 5 283 0 5 125 0 6 82 0 19 183 1 12 275 18 7 198 3 0 104 1 0 69 10 8 64 7 6 60 61 70 15 1 2 37 13 14 84 5 4 40 chain 3162 chr3 198022430 + 170739213 170739248 MLT1E2 623 - 3 38 221713 35 chain 12432 chr3 198022430 + 170765254 170765422 MER30 238 - 0 192 150520 78 1 7 25 4 0 10 0 22 50 chain 4614 chr3 198022430 + 170768180 170768256 LTR54 533 + 458 533 199471 12 12 11 52 chain 117762 chr3 198022430 + 170769874 170771401 THE1B-int 1605 + 1 1595 31873 103 4 6 155 3 7 89 0 12 59 1 27 284 11 24 118 7 10 128 0 2 491 1 6 73 chain 15984 chr3 198022430 + 170771411 170771728 THE1B 368 + 0 345 138396 44 46 61 34 0 4 25 1 0 30 42 52 95 chain 171048 chr3 198022430 + 170835767 170837740 L1PA4 6152 + 4175 6152 21937 176 0 4 851 7 1 91 0 4 91 1 0 65 0 2 219 4 0 219 3 1 97 1 7 5 7 0 30 0 1 100 0 7 6 chain 25425 chr3 198022430 + 170848883 170849155 AluY 311 + 38 311 102569 94 0 1 178 chain 71274 chr3 198022430 + 170937356 170938190 L1PA7 6471 + 5635 6469 47814 834 chain 5051 chr3 198022430 + 170955653 170955713 HERVK9-int 4720 - 4310 4370 194630 60 chain 37826 chr3 198022430 + 170959523 170959959 L1PA5 6144 + 5701 6144 72371 214 0 2 209 2 7 11 chain 44818 chr3 198022430 + 171005631 171006122 L1PA2 6032 + 5543 6032 63269 476 2 0 13 chain 66717 chr3 198022430 + 171022064 171022803 L1PA4 6152 + 5406 6152 49776 515 0 2 218 0 5 6 chain 4877 chr3 198022430 + 171080138 171080217 MADE1 96 + 0 96 196523 19 5 6 21 0 16 34 chain 3777 chr3 198022430 + 171136166 171136211 L1MB7 1623 + 1370 1415 210702 45 chain 169475 chr3 198022430 + 171140885 171142774 L1PA4 6152 + 4252 6143 22118 62 0 1 985 0 1 842 chain 57725 chr3 198022430 + 171143697 171144345 L1PA5 6144 + 5487 6135 54119 648 chain 56785 chr3 198022430 + 171166549 171167210 L1PA7 6471 - 7 671 54663 605 0 3 56 chain 24728 chr3 198022430 + 171182932 171183223 AluSp 311 + 11 302 106280 291 chain 29038 chr3 198022430 + 171188168 171188475 AluYk11 308 - 1 308 88819 307 chain 20352 chr3 198022430 + 171191449 171191694 AluY 311 + 43 291 126053 89 6 7 97 0 2 53 chain 6620 chr3 198022430 + 171194450 171194524 L1PA16 3655 + 3126 3200 180306 74 chain 24455 chr3 198022430 + 171199650 171199939 AluSp 311 - 23 310 107779 156 2 0 131 chain 12297 chr3 198022430 + 171211250 171211554 AluSp 311 - 4 167 151022 51 5 3 84 139 0 25 chain 7379 chr3 198022430 + 171222033 171222124 U6 107 - 0 91 174903 91 chain 77054 chr3 198022430 + 171234864 171235789 L1PA8 5853 - 2034 2958 44829 904 9 8 12 chain 156383 chr3 198022430 + 171235789 171237743 L1PA8 5853 + 3848 5847 23814 472 3 5 87 5 14 266 8 38 203 1 0 54 0 4 14 5 4 362 0 5 145 0 3 40 1 0 46 2 0 38 1 0 17 0 1 13 1 0 61 2 1 19 1 0 87 chain 45775 chr3 198022430 + 171240254 171240804 MLT2A2 560 + 0 551 62253 204 0 1 206 1 0 38 0 1 101 chain 22755 chr3 198022430 + 171243593 171243856 AluSc8 310 + 40 306 116805 92 0 3 171 chain 13593 chr3 198022430 + 171289583 171289779 L1PB 1623 - 122 313 146000 13 3 0 4 1 0 30 2 1 7 1 0 119 0 1 16 chain 13155 chr3 198022430 + 171289779 171289993 L1PB1 5432 + 4908 5103 147626 75 0 2 10 1 2 5 1 0 12 0 2 34 23 0 53 chain 9301 chr3 198022430 + 171294473 171294578 LTR7Y 441 + 336 441 164055 105 chain 295681 chr3 198022430 + 171294578 171298243 HERVH-int 3825 + 0 3825 13663 212 0 11 309 5 0 38 65 0 9 2 1 24 28 0 14 1 0 12 4 1 60 1 21 17 2 1 49 1 0 133 0 3 311 15 0 228 0 2 225 8 35 1354 9 11 39 8 218 254 3 8 225 chain 28595 chr3 198022430 + 171299514 171299947 LTR7Y 441 + 1 441 90758 93 20 11 55 68 84 197 chain 539565 chr3 198022430 + 171342870 171348814 L1PA3long 6157 + 216 6157 2891 470 0 3 21 11 12 1317 6 0 287 1 0 234 0 1 136 1 0 3460 chain 14908 chr3 198022430 + 171351252 171351436 L1PA7 6471 + 6287 6470 141611 22 1 0 161 chain 4364 chr3 198022430 + 171357640 171357697 MLT2B1 522 + 465 522 202407 57 chain 11081 chr3 198022430 + 171399759 171399889 L1PA7 6471 + 6330 6460 155885 130 chain 15619 chr3 198022430 + 171402809 171403027 MER30 238 + 0 238 139525 89 0 1 4 3 5 10 5 22 107 chain 77046 chr3 198022430 + 171434684 171435842 L1PREC2 3366 - 360 1460 44946 35 37 19 4 0 1 25 2 0 16 78 60 40 2 1 53 2 0 159 1 2 148 26 6 414 0 1 116 chain 3854 chr3 198022430 + 171437395 171437441 MADE1 96 - 50 96 209570 46 chain 8574 chr3 198022430 + 171442887 171442980 L1PA5 6144 + 6042 6135 167883 93 chain 17542 chr3 198022430 + 171464253 171464522 LTR12C 1709 + 650 877 134152 27 41 0 160 1 0 40 chain 4965 chr3 198022430 + 171503044 171503202 MER33 330 - 36 200 195532 43 87 93 28 chain 44821 chr3 198022430 + 171532307 171532826 L1PA6 6164 - 4 523 63267 519 chain 9254 chr3 198022430 + 171548418 171548593 L1MA5A 2387 + 2155 2296 164295 32 1 0 30 3 0 15 39 9 55 chain 111561 chr3 198022430 + 171575778 171577097 L1PA6 6164 + 4571 6162 33789 37 0 1 10 7 0 33 0 5 693 0 4 42 9 278 488 chain 3135 chr3 198022430 + 171603713 171603888 MLT1I 406 + 147 327 222257 25 124 129 26 chain 13706 chr3 198022430 + 171604908 171605123 MER44A 345 + 124 342 145580 120 0 2 12 2 0 6 19 21 16 0 1 40 chain 4440 chr3 198022430 + 171624540 171624598 LTR12C 1709 - 885 1021 201454 10 0 78 48 chain 3284 chr3 198022430 + 171624615 171624653 LTR12C 1709 - 553 591 219292 38 chain 14155 chr3 198022430 + 171626292 171626506 MER44A 345 + 94 311 144027 7 0 10 7 4 0 38 0 3 11 1 0 7 1 0 65 4 0 69 chain 14327 chr3 198022430 + 171637899 171638077 L1MA3 4352 + 3738 3915 143467 42 1 0 135 chain 343212 chr3 198022430 + 171639218 171644013 L1PB1 5432 + 944 5422 11806 444 9 16 174 0 10 67 0 3 253 0 1 215 6 0 126 13 12 91 3 0 134 4 0 215 1 0 4 0 1 103 8 7 22 2 0 36 0 2 18 1 0 360 0 8 44 4 5 417 2 0 33 11 10 217 0 1 411 0 1 40 9 13 141 0 2 25 3 0 436 308 0 32 8 6 14 1 0 24 1 0 9 1 0 9 2 0 3 2 0 9 6 4 48 2 1 16 1 0 44 1 0 15 25 12 19 2 0 5 1 0 14 3 1 17 14 23 4 1 0 13 1 0 18 chain 19653 chr3 198022430 + 171664020 171664262 L1PREC2 3366 - 723 965 128242 242 chain 28372 chr3 198022430 + 171664262 171664564 AluYa5 310 - 9 310 91691 175 1 0 126 chain 28712 chr3 198022430 + 171686663 171686962 AluYa5 310 + 9 308 90283 299 chain 7440 chr3 198022430 + 171689900 171689993 MLT1A0-int 1658 + 29 118 174519 63 4 0 26 chain 4361 chr3 198022430 + 171709007 171709055 MER82 654 + 83 131 202428 48 chain 107605 chr3 198022430 + 171715950 171717225 LTR12C 1709 - 0 1709 34827 62 1 234 185 0 4 107 2 0 6 1 0 74 0 200 368 1 0 4 0 1 464 chain 6374 chr3 198022430 + 171719553 171719653 L1PB1 5432 + 5053 5147 182213 50 6 3 8 1 0 24 2 0 9 chain 15317 chr3 198022430 + 171719670 171719955 L1PB1 5432 + 5159 5420 140432 10 3 1 43 0 1 5 1 0 18 1 0 44 1 0 15 3 0 8 13 4 19 1 0 4 12 10 5 2 0 26 1 0 19 1 0 13 1 0 16 chain 2734 chr3 198022430 + 171746668 171746700 Tigger2b_Pri 1066 + 53 85 229697 32 chain 9633 chr3 198022430 + 171751019 171751141 MSTD 398 - 276 398 162424 122 chain 19856 chr3 198022430 + 171752506 171752881 MSTA 426 - 21 426 127632 85 4 7 12 0 5 13 0 31 7 78 64 31 5 12 5 2 0 133 chain 27524 chr3 198022430 + 171826951 171827254 AluYa5 310 - 7 310 94588 177 1 0 113 0 1 12 chain 25076 chr3 198022430 + 171836688 171836985 AluY 311 + 12 308 104429 121 1 0 175 chain 21308 chr3 198022430 + 171838499 171838764 AluSp 311 + 18 292 122834 22 1 0 79 1 10 5 0 1 157 chain 25357 chr3 198022430 + 171848904 171849201 AluSp 311 + 0 300 102907 91 0 3 206 chain 21030 chr3 198022430 + 171885453 171885746 MER1B 344 + 41 339 123810 216 29 34 48 chain 25807 chr3 198022430 + 171905786 171906073 AluSp 311 - 13 300 100840 287 chain 22560 chr3 198022430 + 171906211 171906494 AluSc 308 - 26 308 117758 156 1 0 126 chain 18398 chr3 198022430 + 171940278 171940570 MER1B 344 - 0 303 131792 62 26 31 31 4 0 37 0 10 17 10 10 105 chain 23755 chr3 198022430 + 172052243 172052520 AluSp 311 - 23 300 111743 277 chain 4280 chr3 198022430 + 172062885 172062933 MER41A 554 - 88 136 203478 48 chain 6731 chr3 198022430 + 172073195 172073291 MER5A 189 + 0 97 179465 56 5 6 35 chain 14646 chr3 198022430 + 172078442 172078719 L1MD 993 - 179 448 142433 32 5 0 103 15 14 19 1 0 41 35 34 26 chain 165656 chr3 198022430 + 172099262 172101195 L1PA7 6471 - 1 1940 22559 295 0 1 33 5 4 346 1 0 167 0 3 127 0 1 544 1 0 269 0 4 145 chain 23461 chr3 198022430 + 172107380 172107667 AluY 311 + 10 296 113308 17 3 0 236 0 2 31 chain 84526 chr3 198022430 + 172136055 172137274 L1MA3 4352 - 1430 2629 41709 88 4 0 11 0 5 24 1 2 6 0 1 15 0 1 187 1 0 5 0 1 59 5 0 28 1 0 46 10 14 64 1 0 52 1 0 261 1 0 89 0 1 69 27 6 109 1 2 53 chain 21011 chr3 198022430 + 172149801 172150150 THE1B 368 - 0 361 123870 26 8 5 18 13 20 73 0 9 22 2 0 23 2 0 77 17 16 4 0 1 29 0 5 27 2 0 6 chain 123312 chr3 198022430 + 172150162 172151744 THE1B-int 1605 - 6 1605 29942 143 10 2 74 8 6 418 0 1 347 1 0 4 1 2 122 0 2 22 1 26 83 1 0 347 chain 11603 chr3 198022430 + 172152119 172152264 MSTB2 466 - 299 444 153878 145 chain 41232 chr3 198022430 + 172183480 172184038 MLT2A2 560 - 1 558 67606 12 4 0 7 0 1 126 5 16 169 1 2 82 0 1 4 11 1 132 1 0 4 chain 30781 chr3 198022430 + 172184038 172184381 L1PA4 6152 - 109 453 82901 80 0 1 263 chain 10215 chr3 198022430 + 172184385 172184493 L1PA4 6152 + 6028 6136 159537 108 chain 14580 chr3 198022430 + 172186718 172186888 AluY 311 + 138 308 142656 170 chain 8531 chr3 198022430 + 172187657 172187791 L1PA8 5853 + 5721 5853 168127 19 2 1 13 8 7 92 chain 24916 chr3 198022430 + 172208256 172208600 L1PA8 5853 - 0 337 105240 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 44 8 7 41 chain 32572 chr3 198022430 + 172208622 172208996 L1PA4 6152 - 9 384 79897 141 0 1 233 chain 264301 chr3 198022430 + 172209032 172212050 L1PA4 6152 - 9 3013 15469 81 1 0 23 0 1 840 15 0 310 1 0 248 1 2 973 0 1 525 chain 19583 chr3 198022430 + 172212590 172212865 L1P3 4156 - 17 295 128421 24 2 1 7 2 0 17 0 1 82 0 1 4 5 9 132 chain 13543 chr3 198022430 + 172218264 172218419 L1PA3long 6157 - 381 536 146201 155 chain 34142 chr3 198022430 + 172218419 172218800 L1PA3long 6157 + 5768 6150 77425 241 0 1 140 chain 114112 chr3 198022430 + 172238600 172239997 L1PA8 5853 + 4452 5853 33068 308 0 1 9 4 7 207 10 0 25 0 5 70 0 2 119 0 1 91 0 6 261 1 0 44 2 0 62 0 1 7 2 1 49 0 1 11 2 1 19 1 0 93 chain 23365 chr3 198022430 + 172250999 172251294 L1PA13 3608 - 2280 2580 113840 17 0 3 4 0 1 211 1 2 62 chain 17987 chr3 198022430 + 172277389 172277638 AluSc 308 + 29 289 132894 68 1 0 143 17 29 20 chain 115302 chr3 198022430 + 172286896 172289439 L1MA1 4479 - 289 2083 32680 18 7 0 13 4 1 7 1 0 9 1 0 35 2 0 29 1 0 126 3 0 5 1 0 85 1 0 16 2 0 20 1 0 70 2 1 16 2 0 25 1 0 66 1 0 33 432 45 51 2 0 131 2 0 5 8 7 11 19 0 8 11 31 15 5 0 20 14 8 20 5 0 5 0 1 5 2 0 74 4 0 16 299 1 54 0 1 121 2 0 27 1 0 82 5 4 68 1 0 33 2 0 103 1 0 61 18 0 9 0 15 67 1 0 120 chain 18114 chr3 198022430 + 172305597 172309182 L1PREC2 3366 - 1170 2258 132557 213 3275 778 97 chain 3120 chr3 198022430 + 172334657 172334690 Ricksha_0 1343 - 1310 1343 222558 33 chain 26116 chr3 198022430 + 172371536 172371844 AluSc5 308 - 0 308 99548 308 chain 28720 chr3 198022430 + 172375727 172376105 MER41A 554 + 0 384 90247 305 9 10 24 0 1 12 4 8 24 chain 2962 chr3 198022430 + 172377685 172377725 LTR9B 643 + 6 45 225848 19 1 0 20 chain 518545 chr3 198022430 + 172377777 172383899 L1PA6 6164 - 2 6164 5325 144 0 7 688 5 9 235 1 0 451 0 2 395 0 5 127 4 3 143 0 1 265 0 2 69 0 1 347 0 4 73 0 1 169 0 1 694 0 1 107 0 3 261 1 0 487 6 8 65 5 6 878 2 1 313 0 1 58 0 1 123 0 7 6 chain 6419 chr3 198022430 + 172393140 172393227 L1PA6 6164 + 6060 6160 181866 69 0 17 7 4 0 7 chain 49387 chr3 198022430 + 172396631 172397229 LTR10C 591 - 1 591 59458 80 0 2 207 11 0 66 0 1 234 chain 27260 chr3 198022430 + 172436428 172436796 MER41B 635 - 127 494 95405 40 18 17 310 chain 39955 chr3 198022430 + 172437447 172438332 HERVK14-int 1672 + 32 590 69388 9 1 0 49 1 0 47 5 4 157 359 36 232 6 5 19 chain 143531 chr3 198022430 + 172439454 172441229 HERV17-int 4347 + 13 3881 25556 14 1 0 49 7 6 31 2 0 10 24 23 151 1 0 30 0 430 455 0 1 128 6 7 129 5 0 583 0 1672 149 chain 10168 chr3 198022430 + 172442552 172442676 MER41B 635 - 511 635 159764 124 chain 24858 chr3 198022430 + 172454247 172454565 AluY 311 + 5 309 105579 78 15 0 49 0 1 176 chain 18299 chr3 198022430 + 172508410 172508652 Tigger1 2417 - 914 1157 132081 92 1 0 110 2 4 37 chain 21846 chr3 198022430 + 172510969 172511242 AluSc5 308 - 24 308 120831 110 0 1 116 5 15 42 chain 5878 chr3 198022430 + 172514280 172514348 U4 144 - 76 144 186389 68 chain 23797 chr3 198022430 + 172544241 172544572 Tigger1 2417 + 1826 2164 111494 59 0 3 109 0 1 40 8 10 42 5 6 68 chain 13164 chr3 198022430 + 172578578 172578757 MLT1B 390 + 196 376 147600 153 9 10 17 chain 118753 chr3 198022430 + 172584391 172585776 LTR12C 1709 + 0 1709 31514 90 0 3 222 1 0 484 3 319 106 0 4 72 9 13 314 1 0 8 1 0 74 chain 125279 chr3 198022430 + 172597512 172599084 THE1B-int 1605 + 0 1605 29303 171 2 1 256 1 26 67 1 0 78 0 3 339 0 2 122 0 3 312 0 4 94 6 4 123 chain 19226 chr3 198022430 + 172601559 172601882 THE1C 375 + 13 329 129447 34 31 28 32 4 5 67 5 6 62 8 2 80 chain 27418 chr3 198022430 + 172665372 172665734 L1PA8 5853 + 5496 5853 94912 24 0 1 14 0 1 28 1 0 45 2 0 70 1 0 13 1 0 43 11 10 15 1 0 93 chain 47193 chr3 198022430 + 172731167 172731822 LTR76 689 - 8 689 61052 21 2 0 7 7 6 11 5 0 85 3 2 157 0 1 4 0 6 63 6 7 154 0 20 88 5 4 16 0 8 21 chain 24403 chr3 198022430 + 172737811 172738098 AluSq10 312 + 8 299 108065 117 1 0 104 0 5 65 chain 14073 chr3 198022430 + 172759566 172759754 L1PA4 6152 + 5961 6152 144312 22 18 21 148 chain 40035 chr3 198022430 + 172772051 172772533 L1PA8A 6298 + 5807 6290 69270 371 0 1 111 chain 115744 chr3 198022430 + 172790565 172792107 THE1B-int 1605 + 27 1605 32546 16 43 43 218 16 8 120 10 37 212 0 1 53 0 15 71 0 1 36 1 0 97 5 6 644 chain 231416 chr3 198022430 + 172802741 172805784 L1PA10 4194 - 33 3071 17234 10 2 1 25 12 9 11 1 2 168 0 4 55 0 1 270 4 1 167 0 1 287 33 13 191 0 4 109 3 0 44 7 5 113 5 6 5 1 0 26 7 8 287 0 3 105 0 6 205 0 4 139 1 4 6 3 0 212 5 7 524 chain 18814 chr3 198022430 + 172836848 172837107 L1PA8 5853 + 5596 5848 130637 12 2 0 66 6 5 10 2 0 51 2 1 19 1 0 88 chain 25551 chr3 198022430 + 172847872 172848177 AluSc5 308 + 2 308 101980 51 0 1 254 chain 237744 chr3 198022430 + 172865093 172868770 L1MA1 4479 + 477 4190 16894 32 0 1 38 4 0 204 12 17 21 4 0 7 10 14 75 1 0 50 10 5 51 11 97 281 0 2 44 0 8 455 45 20 42 13 14 86 0 3 7 0 5 34 40 51 23 3 0 9 9 0 123 0 1 34 1 2 27 0 1 17 29 24 90 1 0 34 0 3 64 11 7 68 1 0 103 2 0 33 1 0 50 10 12 78 0 14 27 16 14 25 5 4 57 3 2 70 2 0 18 4 0 39 0 3 34 1 0 12 13 8 6 1 0 112 3 0 124 1 0 6 2 0 124 13 11 60 1 0 25 2 0 16 10 5 59 8 7 19 2 0 14 1 0 88 1 0 5 8 5 121 6 5 22 2 0 37 1 0 9 1 0 4 1 4 13 7 0 18 chain 25635 chr3 198022430 + 172873031 172873421 LTR7 482 - 23 482 101558 151 3 1 20 0 31 33 1 2 57 14 15 34 26 64 51 chain 281440 chr3 198022430 + 172875236 172878914 HERVH-int 3825 - 0 3825 14567 87 6 11 180 0 2 99 37 38 663 4 1 105 0 2 87 2 1 4 0 1 246 0 1 202 0 5 13 22 72 535 1 0 39 9 0 89 0 1 116 15 0 335 0 1 36 1 10 64 9 221 12 0 1 16 59 0 38 68 8 11 0 4 102 0 1 32 1 0 333 chain 28366 chr3 198022430 + 172878928 172879334 LTR7 482 - 12 482 91706 155 3 1 19 14 41 29 0 1 109 10 48 67 chain 47328 chr3 198022430 + 172889146 172889743 L1PA7 6471 - 6 606 60951 305 0 1 7 14 15 234 1 2 36 chain 9901 chr3 198022430 + 172890580 172890688 L1PA5 6144 + 6029 6137 161063 108 chain 109546 chr3 198022430 + 172900321 172901818 THE1B-int 1605 + 0 1599 34307 429 1 26 82 0 1 150 23 24 69 15 16 320 19 15 127 7 6 49 30 23 57 1 87 118 chain 7099 chr3 198022430 + 172916026 172916116 MSTB-int 1649 - 1551 1648 176763 72 0 7 18 chain 26953 chr3 198022430 + 172957410 172957710 L1PA3long 6157 - 15 315 96439 300 chain 107737 chr3 198022430 + 172971680 172972854 L1PA3long 6157 - 7 1181 34793 1174 chain 32683 chr3 198022430 + 172991844 172992572 MER48 407 + 0 407 79716 332 321 0 75 chain 191842 chr3 198022430 + 172993030 172996281 HERVH48-int 3304 + 206 3241 19875 51 55 35 4 1 0 66 7 3 4 1 0 72 1 0 12 6 0 11 12 6 82 1 0 7 3 1 57 45 32 14 1 0 4 3 1 67 3 1 43 2 0 26 2 1 70 25 17 55 3 5 57 2 0 6 6 5 21 1 0 14 2 0 18 22 17 21 2 0 5 1 0 16 1 0 19 2 0 27 1 0 16 2 0 5 11 6 4 1 0 122 1 0 11 1 0 9 1 0 217 1 0 90 1 0 278 1 2 8 2 1 243 4 3 18 2 0 70 1 0 8 5 4 47 1 0 181 1 4 44 1 0 22 0 4 9 5 0 27 8 6 13 4 1 30 2 0 19 2 0 8 152 114 19 3 0 5 3 1 8 2 0 25 16 8 6 1 0 15 9 7 6 1 0 45 6 3 68 60 44 72 2 0 11 77 53 22 chain 3429 chr3 198022430 + 172996285 172996321 HERVH48-int 3304 + 2526 2562 216606 36 chain 2057 chr3 198022430 + 172996330 172996361 HERVH48-int 3304 + 2570 2605 238133 22 0 4 9 chain 6445 chr3 198022430 + 172996366 172996475 HERVH48-int 3304 + 2605 2706 181679 31 4 2 13 3 1 30 2 0 17 2 0 7 chain 33543 chr3 198022430 + 172999304 172999763 MER48 407 + 0 407 78328 159 53 0 191 0 1 56 chain 6769 chr3 198022430 + 173000052 173000135 L1PB4 2604 + 2453 2536 179182 83 chain 403343 chr3 198022430 + 173011523 173017015 L1PB1 5432 - 28 5408 9990 13 1 0 19 1 0 24 62 46 6 3 0 16 1 0 44 1 0 15 2 1 53 4 0 8 5 1 12 1 0 8 1 0 24 1 0 9 97 7 45 14 16 25 0 2 105 6 9 24 4 0 57 2 10 184 3 0 48 6 5 562 16 23 27 1 0 228 2 0 238 0 4 328 0 1 19 6 5 36 0 1 252 3 5 8 3 0 20 5 6 216 0 3 71 6 5 18 0 3 108 0 4 23 3 0 61 1 0 15 4 3 358 1 0 204 7 3 81 10 11 70 0 4 141 7 0 6 1 0 167 0 2 472 1 0 732 chain 29294 chr3 198022430 + 173070881 173071280 LTR7 482 - 12 482 87604 175 5 6 11 1 32 21 0 1 109 8 46 69 chain 534951 chr3 198022430 + 173099643 173106071 L1PA7 6471 + 0 6467 3600 411 0 2 104 6 5 439 3 1 388 0 1 230 0 1 480 0 1 97 0 5 354 0 2 60 0 1 23 1 5 28 1 2 729 3 14 101 1 2 518 7 6 1213 0 1 64 1 2 324 0 3 138 0 3 101 0 3 52 0 1 126 0 1 94 0 1 179 2 1 150 chain 26876 chr3 198022430 + 173109983 173110285 AluY 311 + 3 305 96714 302 chain 56211 chr3 198022430 + 173137873 173138502 L1PA4 6152 - 6 636 55013 254 1 0 232 1 0 131 0 3 10 chain 29253 chr3 198022430 + 173162773 173163085 AluYa5 310 + 0 309 87775 13 3 0 296 chain 545919 chr3 198022430 + 173163856 173169991 L1PA4 6152 - 0 6146 1954 168 1 2 90 1 0 360 0 2 887 0 5 303 2 0 69 0 1 1754 0 1 679 0 1 768 0 2 674 0 1 379 chain 24308 chr3 198022430 + 173182225 173182515 AluSp 311 - 13 302 108613 17 1 0 272 chain 223045 chr3 198022430 + 173206876 173209400 L1PA4 6152 - 0 2517 17708 113 0 1 983 8 0 1420 chain 238272 chr3 198022430 + 173215855 173218537 L1PA4 6152 - 10 2697 16864 329 0 1 1548 0 3 16 1 2 788 chain 5771 chr3 198022430 + 173245486 173245564 L1MA3 4352 - 941 1018 187427 26 2 0 46 0 1 4 chain 44391 chr3 198022430 + 173263369 173263881 L1PA7 6471 + 5946 6457 63699 105 1 0 406 chain 26026 chr3 198022430 + 173311504 173311841 THE1A 353 - 0 337 99915 259 1 0 41 0 2 4 1 0 31 chain 124244 chr3 198022430 + 173311864 173313436 THE1A-int 1579 - 5 1579 29606 143 9 11 1420 chain 3131 chr3 198022430 + 173366300 173366336 L1ME1 1623 + 1214 1250 222343 36 chain 32156 chr3 198022430 + 173373619 173374016 MER51B 395 - 0 395 80601 150 1 0 32 1 0 213 chain 20329 chr3 198022430 + 173391552 173391895 MER51B 395 - 14 395 126147 72 1 13 51 1 0 10 26 27 11 0 1 80 10 16 34 13 32 34 chain 10175 chr3 198022430 + 173400460 173400588 MER85 139 - 0 139 159743 4 0 1 35 0 10 89 chain 50654 chr3 198022430 + 173442382 173442977 L1PA5 6144 + 5543 6143 58535 307 0 1 138 0 8 33 4 0 113 chain 4872 chr3 198022430 + 173538255 173538400 MER44A 345 - 0 149 196573 33 73 77 39 chain 5955 chr3 198022430 + 173540249 173540403 Tigger4b 360 + 24 315 185641 8 8 0 20 8 126 39 30 51 32 0 6 9 chain 13054 chr3 198022430 + 173548852 173549006 L1MA3 4352 - 385 539 148016 154 chain 118360 chr3 198022430 + 173560108 173561675 THE1B-int 1605 - 0 1596 31664 46 0 9 269 1 0 489 57 52 284 2 27 183 1 2 235 chain 28569 chr3 198022430 + 173569869 173570174 AluY 311 + 5 311 90870 127 0 1 178 chain 27315 chr3 198022430 + 173580034 173580324 AluYa5 310 + 20 310 95223 290 chain 86278 chr3 198022430 + 173735306 173736373 MER11B 1079 - 5 1079 41049 19 12 1 20 0 1 115 4 2 142 2 4 436 1 18 316 chain 14472 chr3 198022430 + 173757059 173757274 L1PA8 5853 - 0 211 142977 85 9 8 19 2 1 50 1 0 11 2 1 36 chain 5023 chr3 198022430 + 173762854 173762913 THE1D-int 1627 - 1526 1585 194902 59 chain 10879 chr3 198022430 + 173798599 173798805 MER50 708 - 540 708 156667 64 0 1 19 8 2 22 50 17 43 chain 3650 chr3 198022430 + 173799660 173799705 MLT1A0 366 - 314 359 212800 45 chain 3559 chr3 198022430 + 173803638 173803682 MADE1 96 + 0 44 214340 44 chain 22633 chr3 198022430 + 173835124 173835389 AluY 311 + 0 261 117409 123 1 0 3 3 0 135 chain 111125 chr3 198022430 + 173861706 173862977 L1PA7 6471 - 3 1284 33904 7 4 0 131 0 1 703 0 12 93 0 1 333 chain 22165 chr3 198022430 + 173870185 173870440 L1PA5 6144 + 5883 6138 119520 255 chain 56977 chr3 198022430 + 173891639 173892517 L1PB1 5432 - 12 858 54543 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 7 5 14 26 13 14 8 7 37 1 0 16 2 1 53 2 0 9 4 0 20 1 0 24 3 0 9 1 2 64 1 2 40 1 2 10 0 1 171 15 12 179 0 1 47 chain 6823 chr3 198022430 + 173928536 173928708 Tigger3c 601 + 8 431 178776 13 44 32 21 7 260 20 1 11 66 chain 133058 chr3 198022430 + 173928710 173930326 LTR12C 1709 - 0 1709 27409 167 0 102 212 0 4 107 3 1 5 1 0 274 1 41 12 50 0 784 chain 28516 chr3 198022430 + 173949817 173950228 LTR7 482 - 0 482 91113 103 12 13 4 1 0 72 0 1 22 11 43 109 8 46 69 chain 22081 chr3 198022430 + 173972981 173973246 AluY 311 + 38 303 119880 94 0 1 25 1 0 145 chain 5949 chr3 198022430 + 173975600 173975663 MLT2A1 477 + 0 63 185692 63 chain 552903 chr3 198022430 + 173977475 173983484 L1PA2 6032 - 2 6020 1076 980 0 1 1056 0 2 430 1 0 479 0 1 540 3 5 1072 0 1 778 0 3 670 chain 12742 chr3 198022430 + 174021567 174021733 THE1D 372 + 207 372 149281 18 1 0 147 chain 43344 chr3 198022430 + 174025909 174026471 MLT2A2 560 - 0 560 64993 46 5 1 398 9 10 28 0 1 76 chain 14941 chr3 198022430 + 174040156 174040315 L1PA3long 6157 + 5998 6157 141502 159 chain 12365 chr3 198022430 + 174049760 174049928 L1MA5A 2387 + 1383 1552 150777 15 5 6 148 chain 4618 chr3 198022430 + 174072767 174072826 L1MB5 1630 + 1553 1612 199423 19 0 1 28 1 0 11 chain 17614 chr3 198022430 + 174087315 174087647 THE1B 368 + 0 338 133954 105 11 12 52 65 71 60 2 0 10 1 2 26 chain 19048 chr3 198022430 + 174104026 174104358 THE1B 368 - 12 368 129982 113 29 42 5 3 0 16 9 8 85 28 43 44 chain 8054 chr3 198022430 + 174106340 174106440 MSTA-int 1630 - 13 113 170732 100 chain 27720 chr3 198022430 + 174108340 174108724 MSTA 426 - 10 395 93967 197 24 25 163 chain 28866 chr3 198022430 + 174113377 174113796 MLT2A1 477 + 0 395 89599 128 5 5 6 0 1 21 12 9 73 18 0 142 4 0 10 chain 96886 chr3 198022430 + 174113796 174115016 HERVL-int 5654 + 2612 5654 37588 347 0 6 226 0 1 45 0 1805 373 0 4 30 0 1 6 0 1 105 0 1 20 11 14 57 chain 31152 chr3 198022430 + 174115016 174115495 MLT2A1 477 + 0 477 82253 169 4 1 50 3 4 133 4 3 25 52 53 39 chain 28787 chr3 198022430 + 174123150 174123459 AluYf4 310 + 0 309 89956 309 chain 5001 chr3 198022430 + 174144239 174144296 MSTC 436 + 2 59 195122 57 chain 8915 chr3 198022430 + 174211037 174211384 MLT1B 390 + 109 390 166061 53 218 152 76 chain 21180 chr3 198022430 + 174212172 174212422 L1PA5 6144 + 5892 6144 123275 238 1 3 11 chain 28491 chr3 198022430 + 174218867 174219167 AluYa5 310 - 10 310 91220 300 chain 4245 chr3 198022430 + 174227597 174227665 MLT1B 390 - 293 371 203944 28 6 16 34 chain 4745 chr3 198022430 + 174240063 174240126 MLT1A0 366 + 45 108 197973 8 0 1 4 1 0 50 chain 18548 chr3 198022430 + 174248291 174248611 THE1B 368 - 0 368 131362 115 45 55 25 2 1 35 19 43 39 0 15 40 chain 41043 chr3 198022430 + 174250647 174251142 LTR10D 510 + 0 510 67837 74 0 13 37 0 1 106 1 0 38 1 3 174 0 1 41 1 0 22 chain 3184 chr3 198022430 + 174273010 174273049 MER39 703 - 83 122 221224 39 chain 40181 chr3 198022430 + 174304625 174305092 L1PA5 6144 - 0 467 69063 467 chain 172365 chr3 198022430 + 174305092 174307289 L1P2 5180 - 2952 5176 21777 661 0 5 22 0 1 4 2 1 239 0 1 44 0 2 293 0 25 136 2 1 6 1 0 272 1 0 8 1 0 258 3 2 86 23 22 135 chain 10595 chr3 198022430 + 174310040 174310188 L1PA3long 6157 - 0 128 157850 68 4 0 6 16 0 54 chain 8822 chr3 198022430 + 174318750 174318887 L1MA3 4352 - 28 160 166543 11 1 0 25 1 0 5 2 1 20 2 0 70 chain 553421 chr3 198022430 + 174322964 174329115 L1PA3long 6157 + 0 6157 1013 5 2 0 133 2 0 240 0 2 199 2 0 1160 0 4 749 0 1 766 0 4 1387 0 1 380 1 0 547 0 1 578 chain 7956 chr3 198022430 + 174365878 174365988 MER44A 345 + 78 201 171303 23 1 7 69 0 7 17 chain 84453 chr3 198022430 + 174386221 174387171 L1PA4 6152 - 9 966 41740 450 0 2 385 0 5 115 chain 3986 chr3 198022430 + 174397344 174397410 MER52A 1651 - 7 74 207606 15 11 12 40 chain 5594 chr3 198022430 + 174405402 174405470 MER63B 433 - 245 313 189150 68 chain 37041 chr3 198022430 + 174424309 174424719 L1PA5 6144 - 882 1292 73206 410 chain 75365 chr3 198022430 + 174424719 174425593 L1PA5 6144 + 5264 6142 45835 27 0 4 322 6 5 379 0 1 140 chain 199653 chr3 198022430 + 174430599 174432851 L1PA4 6152 - 0 2265 19235 6 0 5 833 0 4 946 0 4 467 chain 4124 chr3 198022430 + 174454247 174454292 MER52A 1651 - 811 856 205606 45 chain 179481 chr3 198022430 + 174462147 174464436 L1PA10 4194 + 1840 4148 21032 135 0 1 211 0 1 32 0 1 408 0 1 25 0 1 15 0 4 240 0 3 43 8 10 160 4 0 15 0 1 201 0 12 722 5 4 29 4 1 32 chain 22476 chr3 198022430 + 174479408 174479676 L1PA4 6152 - 1 276 118132 137 1 8 130 chain 22833 chr3 198022430 + 174488358 174488663 AluY 311 + 10 308 116429 111 5 6 79 0 1 38 9 0 21 0 2 13 2 0 27 chain 238797 chr3 198022430 + 174496282 174499227 L1PA7 6471 - 9 4662 16839 86 0 4 70 1 0 4 0 1 662 0 1 10 0 3 271 5 6 51 0 1 277 0 1 45 0 1 234 19 8 227 0 1 290 0 2 5 2 0 3 0 1706 404 3 4 42 8 7 226 chain 27116 chr3 198022430 + 174518969 174519319 THE1B 368 + 2 366 95882 32 5 20 115 1 0 197 chain 181406 chr3 198022430 + 174520278 174522441 L1PA6 6164 - 3 2184 20856 441 0 1 116 0 3 261 1 0 23 0 5 179 0 6 413 0 1 352 0 3 377 chain 12724 chr3 198022430 + 174530972 174531163 MER30 238 - 10 237 149355 29 3 0 69 3 24 70 1 19 16 chain 304128 chr3 198022430 + 174546917 174550255 L1PA3long 6157 - 10 3358 13238 1252 0 4 257 0 6 1829 chain 20340 chr3 198022430 + 174554251 174554523 AluY 311 + 42 307 126103 86 25 15 7 0 3 154 chain 84017 chr3 198022430 + 174555617 174556734 L1PB 1623 + 399 1484 41899 17 1 0 69 1 0 106 24 0 716 4 0 139 1 0 7 2 1 30 chain 181474 chr3 198022430 + 174601113 174603513 HERVL-int 5654 - 0 5654 20849 47 10 1 234 1 0 564 0 3 70 78 76 300 1 3249 227 11 17 323 0 8 175 0 1 359 chain 23648 chr3 198022430 + 174604014 174604310 MLT2A1 477 - 183 477 112320 114 0 1 9 4 1 169 chain 154517 chr3 198022430 + 174641858 174643620 L1PA5 6144 - 0 1756 24042 13 0 5 751 6 0 3 2 0 794 3 0 190 chain 182181 chr3 198022430 + 174643620 174645733 L1P1 4361 + 1103 3216 20765 331 1 0 119 0 2 154 0 1 591 5 1 76 0 2 836 chain 20092 chr3 198022430 + 174714860 174715150 L1PB2 3958 - 131 425 126852 52 1 0 93 0 3 55 4 6 38 4 5 35 1 0 7 chain 39171 chr3 198022430 + 174769693 174770191 MER9a3 513 - 0 513 70508 30 1 0 4 6 7 198 0 18 148 0 1 89 3 0 11 1 0 7 chain 271391 chr3 198022430 + 174770197 174773486 HERVK9-int 4720 - 6 4666 15117 273 2 0 177 0 1 537 1 2 253 0 418 34 0 26 120 0 1 159 0 1 292 0 924 320 0 1 303 0 2 192 0 2 502 22 21 21 1 0 8 1 0 66 1 0 4 chain 41025 chr3 198022430 + 174774328 174774809 MER9a3 513 - 31 513 67866 462 0 1 19 chain 108244 chr3 198022430 + 174786787 174787961 L1PA3long 6157 + 4982 6156 34634 1174 chain 13940 chr3 198022430 + 174790478 174790626 L1PA4 6152 + 5991 6139 144790 148 chain 22437 chr3 198022430 + 174803439 174803710 AluSc 308 + 7 283 118309 41 5 10 225 chain 59135 chr3 198022430 + 174805020 174805714 SVA_B 1603 + 878 1603 53310 43 4 0 24 22 58 144 1 0 456 chain 209923 chr3 198022430 + 174833570 174836053 L1PA5 6144 + 3676 6138 18496 257 0 1 13 0 2 678 31 3 765 3 0 275 0 1 324 9 15 128 chain 3125 chr3 198022430 + 174842883 174842917 MER3 215 + 66 100 222438 34 chain 177948 chr3 198022430 + 174848944 174851544 SVA_D 2077 - 1 2058 21167 337 0 10 328 10 8 4 0 1 35 1 2 166 139 0 82 298 0 65 0 2 88 45 5 19 9 8 154 40 0 37 37 0 706 chain 3076 chr3 198022430 + 174849825 174849861 SVA_D 2077 - 1019 1317 134893 5 0 262 31 chain 2192 chr3 198022430 + 174849861 174849924 SVA_D 2077 - 965 1028 177528 63 chain 2214 chr3 198022430 + 174849941 174849964 SVA_D 2077 - 742 765 149796 23 chain 2178 chr3 198022430 + 174850046 174850095 SVA_D 2077 - 622 670 148169 36 1 0 12 chain 2614 chr3 198022430 + 174850096 174850201 SVA_D 2077 - 722 827 143437 105 chain 1710 chr3 198022430 + 174850212 174850287 SVA_D 2077 - 1152 1226 162019 22 2 0 6 1 3 18 1 0 25 chain 4848 chr3 198022430 + 174850287 174850343 SVA_D 2077 - 917 974 167436 31 0 1 25 chain 3608 chr3 198022430 + 174850497 174850542 SVA_D 2077 - 775 820 130791 45 chain 181217 chr3 198022430 + 174921461 174923941 L1PB1 5432 + 2541 5020 20879 167 8 7 127 2 1 438 0 4 15 0 1 80 7 0 101 9 13 232 10 0 25 13 14 91 0 2 103 1 0 180 7 13 45 4 7 366 1 0 5 0 1 46 4 0 4 0 1 181 6 7 202 chain 4244 chr3 198022430 + 174985296 174985344 MER57D 437 + 385 433 203961 48 chain 9439 chr3 198022430 + 175008405 175008526 MER85 139 - 0 135 163364 40 0 10 38 0 4 43 chain 64359 chr3 198022430 + 175017901 175019050 L1P3 4156 - 17 879 50859 24 2 1 7 2 0 101 2 0 173 1 0 17 1 4 247 0 1 14 0 4 37 325 9 112 0 27 84 chain 11755 chr3 198022430 + 175019082 175019216 L1PA7 6471 + 6328 6462 153240 134 chain 258585 chr3 198022430 + 175038489 175041290 L1PA2 6032 + 3230 6028 15776 1948 0 1 842 4 0 7 chain 22806 chr3 198022430 + 175065524 175065819 L1PA7 6471 - 3 294 116550 7 4 0 284 chain 146497 chr3 198022430 + 175078662 175080329 L1PA5 6144 - 3 1673 25091 293 0 1 41 0 1 894 0 1 291 0 1 67 1 0 80 chain 235958 chr3 198022430 + 175083661 175086274 L1PA3long 6157 - 0 2630 16979 156 0 12 1345 0 1 285 0 4 827 chain 17474 chr3 198022430 + 175089067 175089264 AluYk4 311 - 24 220 134318 16 1 0 180 chain 25591 chr3 198022430 + 175097710 175097996 L1PA4 6152 + 5863 6149 101774 286 chain 2673 chr3 198022430 + 175103392 175103450 L1MA4 2864 + 2784 2834 230485 25 16 8 17 chain 27399 chr3 198022430 + 175110812 175111099 AluYb8 318 + 31 318 94974 287 chain 35996 chr3 198022430 + 175116627 175117174 MER41C 542 - 11 491 74899 189 100 33 258 chain 35195 chr3 198022430 + 175117176 175117639 MER41A 554 - 96 553 75925 143 0 1 218 16 9 86 chain 125805 chr3 198022430 + 175141064 175142530 L1PA4 6152 - 9 1459 29153 373 0 1 468 1 0 63 0 9 378 10 1 46 16 0 111 chain 123192 chr3 198022430 + 175153639 175154971 L1PA2 6032 - 2 1335 29980 857 0 1 475 chain 54342 chr3 198022430 + 175154971 175155553 L1PA2 6032 + 4100 4682 55887 582 chain 38427 chr3 198022430 + 175178621 175179252 LTR12 884 - 340 879 71541 166 2 0 40 2 3 146 25 0 26 0 25 49 90 0 65 1 0 19 chain 7245 chr3 198022430 + 175179081 175179167 LTR12 884 - 602 688 160046 86 chain 24847 chr3 198022430 + 175227641 175227929 L1PA3long 6157 - 0 290 105640 174 0 2 114 chain 29892 chr3 198022430 + 175238070 175238385 AluYb8 318 - 3 318 85122 315 chain 31728 chr3 198022430 + 175241289 175241724 LTR10F 562 - 0 560 81282 65 37 45 51 0 1 138 0 115 94 0 1 50 chain 33178 chr3 198022430 + 175245910 175246364 MLT2A1 477 - 0 477 78943 45 4 0 12 7 35 215 4 1 60 0 2 107 chain 447138 chr3 198022430 + 175246364 175252015 HERVL-int 5654 - 0 5654 8845 171 1 5 326 8 11 243 5 8 238 0 1 269 16 3 1641 0 3 33 24 22 6 0 2 574 0 12 171 6 7 74 14 14 330 20 20 258 1 0 24 35 36 404 1 0 9 0 10 157 7 0 115 0 1 273 47 22 82 1 12 67 chain 16684 chr3 198022430 + 175254589 175254779 AluY 311 + 102 292 136451 190 chain 46978 chr3 198022430 + 175263935 175264607 L1PA13 3608 - 2485 3168 61226 311 0 5 176 2 0 26 0 3 16 0 5 49 1 0 6 0 10 13 7 5 17 1 0 18 6 2 16 2 0 5 chain 33028 chr3 198022430 + 175310320 175310687 L1PA3long 6157 + 5790 6157 79172 367 chain 6265 chr3 198022430 + 175327266 175327336 U4 144 + 0 70 183039 70 chain 38617 chr3 198022430 + 175396202 175396639 L1PA5 6144 + 5674 6111 71270 437 chain 28239 chr3 198022430 + 175396653 175397036 LTR7 482 - 13 482 92158 101 1 2 4 1 0 40 0 1 15 0 1 44 5 37 73 0 50 61 0 2 38 chain 91300 chr3 198022430 + 175431525 175432575 L1PA7 6471 - 4 1057 39196 9 0 2 773 0 1 268 chain 17503 chr3 198022430 + 175432575 175432774 L1PA7 6471 + 5215 5414 134257 199 chain 55372 chr3 198022430 + 175451349 175452059 THE1B-int 1605 - 0 717 55477 525 0 1 6 5 0 75 6 17 93 chain 22815 chr3 198022430 + 175453248 175453593 THE1B 368 - 18 368 116509 60 3 0 87 3 1 7 0 8 22 1 0 70 7 0 6 1 8 39 0 5 24 2 0 13 chain 45632 chr3 198022430 + 175499498 175500000 L1PA2 6032 - 0 508 62371 151 0 6 351 chain 498386 chr3 198022430 + 175500000 175505525 L1HS 6032 - 508 6031 6934 371 0 1 922 0 4 2503 0 4 425 0 1 325 22 10 957 chain 11398 chr3 198022430 + 175535507 175535681 Tigger1 2417 - 9 185 154710 59 19 20 21 1 0 57 0 2 17 chain 36186 chr3 198022430 + 175545272 175545715 LTR7 482 + 0 475 74649 263 1 32 124 13 14 42 chain 309316 chr3 198022430 + 175545724 175549715 HERVH-int 3825 + 0 3825 13031 530 1 0 11 1 0 4 0 1 23 27 0 8 1 0 4 7 23 15 1 0 11 193 1 18 21 0 7 1 0 41 1 0 82 1 0 174 14 13 463 9 0 49 1 0 124 0 5 78 4 31 341 30 42 105 1 2 601 0 11 267 0 19 721 chain 705 chr3 198022430 + 175546393 175546440 HERVH-int 3825 + 631 698 213941 17 4 24 26 chain 36975 chr3 198022430 + 175553559 175554009 LTR7 482 + 0 482 73543 264 0 31 124 15 16 47 chain 8573 chr3 198022430 + 175558932 175559029 L1PA5 6144 - 0 97 167890 97 chain 34317 chr3 198022430 + 175561330 175561734 L1PA4 6152 + 5736 6143 77183 96 0 1 145 1 2 21 0 1 141 chain 256721 chr3 198022430 + 175588143 175591165 L1PA7 6471 - 13 3044 15897 48 0 1 705 0 1 710 8 9 157 0 9 365 0 1 442 0 3 23 7 0 557 chain 8919 chr3 198022430 + 175604256 175604369 MER85 139 + 4 126 166038 86 0 10 15 1 0 11 chain 461875 chr3 198022430 + 175620591 175626956 L1PA5 6144 + 0 6138 8337 89 0 749 104 0 1 226 9 0 1144 7 6 454 5 7 327 0 2 375 974 0 16 0 1 456 6 0 384 0 4 233 3 0 49 0 3 552 0 2 740 0 1 76 1 2 135 chain 75901 chr3 198022430 + 175623337 175624305 LTR5_Hs 974 - 0 974 45541 103 12 10 27 8 15 163 5 4 184 0 1 181 0 1 285 chain 119361 chr3 198022430 + 175641681 175643394 THE1A-int 1579 - 5 1579 31278 573 21 23 28 147 0 35 9 11 18 0 3 226 12 13 644 chain 9900 chr3 198022430 + 175642311 175642431 THE1A-int 1579 + 1257 1377 161067 120 chain 25901 chr3 198022430 + 175643394 175643748 THE1A 353 - 0 353 100431 55 4 6 90 1 0 60 1 0 32 6 5 105 chain 114765 chr3 198022430 + 175654980 175656466 LTR12C 1709 + 0 1709 32856 266 0 1 15 4 5 149 0 1 226 0 119 55 1 0 275 1 0 4 4 2 106 0 4 244 52 22 33 0 131 51 chain 6342 chr3 198022430 + 175683074 175683158 L1PA17 2846 + 2604 2686 182449 28 1 0 17 1 0 37 chain 129194 chr3 198022430 + 175685303 175686839 L1PA7 6471 + 4936 6470 28266 19 1 0 667 2 0 87 0 1 760 chain 23574 chr3 198022430 + 175692907 175693284 L1PB1 5432 - 132 499 112716 4 1 0 15 1 0 44 1 0 18 1 0 49 18 12 11 1 0 9 1 0 23 5 0 7 2 5 82 0 1 30 3 6 51 chain 11999 chr3 198022430 + 175716805 175716956 L1PA10 4194 + 2965 3117 152202 134 0 1 17 chain 77534 chr3 198022430 + 175732889 175733808 L1PA4 6152 - 0 934 44723 6 0 5 223 0 4 612 0 1 4 0 3 24 3 8 39 3 0 5 chain 539873 chr3 198022430 + 175733911 175739970 L1PA3long 6157 + 1 6157 2831 775 0 128 142 1 0 922 1 2 1834 2 3 1951 0 3 12 36 1 171 0 1 206 1 0 5 chain 8151 chr3 198022430 + 175743607 175743701 MLT1B 390 - 13 107 170226 94 chain 323760 chr3 198022430 + 175779542 175783367 HERVH-int 3825 + 0 3825 12448 56 0 3 32 1 3 239 1 0 202 5 0 35 1 0 9 2 1 12 22 12 14 1 0 13 1 0 4 38 35 27 1 0 59 0 1 6 0 2 14 0 1 519 0 3 1509 0 1 280 0 3 275 0 7 438 0 1 9 chain 88346 chr3 198022430 + 175811077 175812178 L1PA7 6471 + 5318 6423 40245 184 0 2 120 0 1 83 1 0 89 0 1 509 16 17 99 chain 22519 chr3 198022430 + 175825864 175826133 AluY 311 + 20 292 117939 33 1 5 68 1 0 166 chain 2966 chr3 198022430 + 175842156 175842198 L1MB7 1623 - 724 763 225744 29 3 0 10 chain 29222 chr3 198022430 + 175850716 175851029 AluYa5 310 + 0 310 87945 132 3 0 178 chain 9030 chr3 198022430 + 175874814 175874945 Tigger1 2417 - 89 228 165441 72 4 1 20 5 16 30 chain 19184 chr3 198022430 + 175898547 175899999 L1PB1 5432 - 28 563 129575 13 1 0 21 1 0 24 2 0 15 7 4 19 17 6 6 1 0 13 3 2 44 26 24 44 2 0 8 19 14 8 1 0 25 1 0 9 1030 141 26 7 10 59 chain 16189 chr3 198022430 + 175901903 175902107 L1PA7 6471 + 6265 6469 137786 204 chain 27542 chr3 198022430 + 175904351 175904649 AluYg6 310 - 13 310 94527 171 1 0 126 chain 117025 chr3 198022430 + 175930337 175931766 LTR12C 1709 - 0 1709 32115 60 1 0 22 1 0 345 1 2 52 0 4 106 4 2 4 1 0 102 0 278 259 16 12 161 8 0 87 0 2 76 0 12 123 chain 5393 chr3 198022430 + 175939655 175939720 Charlie1a 1436 + 1070 1135 191062 65 chain 13769 chr3 198022430 + 175956721 175956870 L1PA4 6152 - 11 160 145368 149 chain 23481 chr3 198022430 + 175995198 175995535 L1PA8 5853 - 0 329 113213 37 1 0 55 2 1 19 2 1 44 10 9 5 1 0 73 2 0 45 1 0 40 chain 11769 chr3 198022430 + 176002905 176003102 MER2 342 + 82 279 153176 27 1 0 22 32 33 115 chain 39616 chr3 198022430 + 176039406 176039857 LTR7 482 - 0 482 69870 188 1 32 262 chain 292200 chr3 198022430 + 176041118 176044698 HERVH-int 3825 - 0 3825 13884 111 0 1 264 1 4 6 3 0 101 8 218 302 0 11 782 0 10 299 7 33 241 0 1 660 0 3 9 0 2 10 0 1 56 3 2 26 4 42 12 1 14 24 66 1 9 1 0 30 12 8 532 chain 39298 chr3 198022430 + 176044700 176045151 LTR7 482 - 0 482 70328 188 1 32 262 chain 126609 chr3 198022430 + 176052108 176053500 L1PA3long 6157 - 11 1403 28917 1392 chain 38135 chr3 198022430 + 176065796 176066242 L1PA7 6471 - 5 448 71939 7 4 0 138 0 1 297 chain 14164 chr3 198022430 + 176079736 176079924 LTR12C 1709 - 501 777 144000 89 4 51 41 0 41 54 chain 26329 chr3 198022430 + 176080857 176081469 L1PB1 5432 + 4881 5409 98703 87 4 0 82 13 14 34 4 7 11 65 7 4 1 0 11 1 0 6 1 0 14 29 23 39 14 16 45 7 6 9 1 0 6 15 6 18 11 8 12 2 0 24 1 0 22 1 0 12 1 0 5 chain 15983 chr3 198022430 + 176112273 176112511 Tigger3b 1229 - 587 887 138399 22 1 5 17 0 1 28 3 0 41 1 0 4 1 62 120 chain 15360 chr3 198022430 + 176112535 176112705 L1PA4 6152 - 7 177 140315 170 chain 10920 chr3 198022430 + 176134460 176134617 HSMAR1 1287 - 0 158 156529 13 21 22 123 chain 29313 chr3 198022430 + 176137306 176137617 AluYa5 310 - 0 310 87496 217 1 0 93 chain 16057 chr3 198022430 + 176162468 176162643 AluYc 301 + 116 291 138193 175 chain 533156 chr3 198022430 + 176165943 176172081 L1PA5 6144 - 14 6129 3828 443 1 0 388 0 5 482 24 0 112 10 0 78 1 0 364 0 3 979 2 0 728 0 1 497 0 9 182 2 0 1337 4 0 417 0 3 87 chain 26559 chr3 198022430 + 176174907 176175253 THE1B 368 + 7 368 97811 37 0 15 43 2 3 67 2 1 195 chain 396997 chr3 198022430 + 176197222 176202687 L1PB1 5432 - 12 5351 10201 21 1 0 8 1 0 21 1 0 15 33 28 17 21 10 18 2 1 44 1 0 16 8 7 47 2 0 9 154 55 51 1 0 4 2 3 338 0 2 82 0 2 450 4 3 53 0 1 156 4 6 220 13 8 17 0 1 148 21 28 309 1 9 375 4 1 209 1 0 132 10 0 328 1 0 57 0 1 235 5 6 255 7 12 199 12 0 7 1 0 17 1 0 234 1 0 4 1 2 346 0 1 513 1 2 195 chain 17142 chr3 198022430 + 176204053 176204257 L1PA8A 6298 - 51 256 135197 68 0 1 136 chain 2697 chr3 198022430 + 176208846 176208877 MER5A1 166 - 45 76 230257 31 chain 371604 chr3 198022430 + 176255071 176260331 L1PB1 5432 + 22 5422 11037 34 0 1 17 4 3 164 1 2 4 1 0 161 4 0 144 18 11 87 0 1 230 1 2 5 1 0 63 6 4 234 5 13 191 10 19 15 0 4 12 0 6 236 0 1 54 8 28 101 1 2 41 0 2 154 9 10 37 16 116 36 4 5 223 14 8 87 1 5 171 10 11 42 0 1 4 1 0 18 7 6 72 11 15 96 2 1 4 0 1 65 3 4 325 1 5 147 0 1 151 1 3 87 0 4 53 4 5 198 0 1 125 6 8 231 0 5 57 0 1 111 1 2 179 0 1 297 3 0 13 5 0 22 1 0 9 1 0 11 16 10 52 18 16 34 11 10 16 3 0 6 46 44 24 1 0 21 1 0 13 1 0 18 chain 21606 chr3 198022430 + 176263722 176264014 L1PA7 6471 - 7 317 121750 148 5 4 98 7 26 34 chain 120710 chr3 198022430 + 176265122 176266674 THE1A-int 1579 - 16 1579 30794 261 0 16 36 2 0 208 0 3 213 0 4 249 6 7 68 18 4 219 0 1 257 3 5 12 chain 27016 chr3 198022430 + 176266674 176267022 THE1A 353 - 0 353 96227 52 0 1 73 0 4 25 1 0 90 1 0 68 0 2 38 chain 4410 chr3 198022430 + 176270228 176270282 LTR41 747 - 693 747 201800 54 chain 78298 chr3 198022430 + 176281103 176282152 MER11C 1089 + 7 1069 44376 239 0 9 62 0 4 65 1 0 146 72 67 72 0 1 18 0 4 5 1 0 31 7 8 125 0 1 56 1 0 144 0 1 4 chain 13526 chr3 198022430 + 176282180 176282336 MER11B 1079 - 923 1079 146262 156 chain 7967 chr3 198022430 + 176303913 176304136 AluJr4 308 + 36 264 171238 11 7 8 37 97 101 71 chain 3983 chr3 198022430 + 176318960 176319010 L1PB1 5432 + 5170 5220 207641 50 chain 10573 chr3 198022430 + 176319012 176319189 L1PB1 5432 + 5221 5391 157943 16 1 0 44 1 0 15 2 0 6 1 4 21 2 0 5 1 0 14 2 0 24 1 0 21 chain 61710 chr3 198022430 + 176323097 176323839 L1PA7 6471 + 5707 6454 52038 655 2 6 5 0 1 80 chain 11413 chr3 198022430 + 176355289 176355493 MER30 238 + 0 232 154627 24 8 7 59 11 37 26 4 10 36 3 0 33 chain 78687 chr3 198022430 + 176358733 176359729 L1PA10 4194 + 3149 4143 44197 224 1 2 619 0 1 87 6 5 29 3 0 27 chain 5636 chr3 198022430 + 176369503 176369619 MER4E1 777 + 490 602 188707 23 8 8 17 2 0 6 12 10 48 chain 4529 chr3 198022430 + 176392742 176392796 MLT1A 405 + 38 92 200463 54 chain 275871 chr3 198022430 + 176393265 176398770 L1PA7 6471 + 2954 6468 14879 512 1 4 79 13 17 85 0 2 334 10 13 7 3 0 250 1 0 4 0 1 33 2010 0 265 3 5 268 5 0 68 0 16 102 13 7 71 0 1 422 14 9 92 1 0 343 0 1 87 0 1 16 0 3 108 0 3 285 chain 132342 chr3 198022430 + 176394635 176396404 L1PA7 6471 + 4333 6104 27551 164 0 4 18 1 3 49 1 0 7 0 1 376 7 5 244 1 2 223 1 0 192 2 0 140 0 2 23 0 3 5 3 0 8 1 0 4 38 39 52 6 5 19 0 1 177 2 0 5 chain 12415 chr3 198022430 + 176396404 176396548 L1PA7 6471 + 4092 4236 148863 144 chain 4014 chr3 198022430 + 176396549 176396598 L1PA7 6471 + 4236 4285 207173 49 chain 23509 chr3 198022430 + 176398770 176399091 L1PA8A 6298 + 5965 6290 108582 129 1 4 140 10 11 41 chain 550203 chr3 198022430 + 176423333 176429495 L1PA4 6152 + 11 6152 1419 763 18 0 2915 2 0 2458 1 0 5 chain 7941 chr3 198022430 + 176429561 176429668 L1PA8 5853 - 6 112 171371 86 2 1 19 chain 3706 chr3 198022430 + 176482606 176482737 L1MC4a 1092 + 766 895 211865 45 70 68 16 chain 82728 chr3 198022430 + 176489726 176490793 MER11C 1089 + 0 1073 42447 250 0 1 62 0 4 69 1 0 146 47 46 13 6 4 93 0 4 10 1 0 35 0 1 127 0 1 54 1 0 142 0 1 10 chain 4474 chr3 198022430 + 176535467 176535616 MER58A 224 + 40 190 201080 39 82 83 28 chain 2903 chr3 198022430 + 176541843 176541956 MER41A 554 - 0 113 151415 113 chain 29405 chr3 198022430 + 176541967 176542276 AluYk12 309 + 0 309 87042 309 chain 1079 chr3 198022430 + 176542276 176542318 MER41A 554 - 113 155 151415 42 chain 9520 chr3 198022430 + 176544673 176544845 L1PB1 5432 + 5259 5413 162975 22 1 0 26 10 1 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 514715 chr3 198022430 + 176545122 176550866 L1PA3long 6157 + 296 6157 5700 481 1 129 2207 4 1 118 0 4 710 0 1 1100 29 17 760 1 0 333 chain 2825 chr3 198022430 + 176551110 176551153 L1MA3 4352 - 20 61 228298 4 1 0 11 1 0 26 chain 520645 chr3 198022430 + 176579102 176585209 L1PA5 6144 + 1 6144 5090 119 0 14 73 3 5 388 6 7 562 9 0 1018 2 1 143 2 1 9 0 24 723 0 1 87 1 0 1165 0 4 417 0 1 524 1 0 665 1 3 189 chain 21403 chr3 198022430 + 176594430 176594810 L1M1 2793 - 98 478 122496 10 1 0 12 1 0 42 66 67 130 2 0 26 5 6 78 0 2 7 chain 19021 chr3 198022430 + 176600082 176600299 AluYk4 311 + 72 289 130062 217 chain 2930 chr3 198022430 + 176601894 176601949 Charlie4a 502 + 414 469 226509 4 1 0 30 6 7 14 chain 27289 chr3 198022430 + 176608959 176609268 AluYk4 311 - 2 311 95310 309 chain 6596 chr3 198022430 + 176609268 176609345 THE1B 368 + 291 368 180490 77 chain 116323 chr3 198022430 + 176611294 176612955 L1PB1 5432 + 3777 5420 32335 214 0 1 301 1 0 157 0 2 98 1 0 71 3 0 59 0 3 124 24 31 153 4 6 106 16 19 11 2 1 10 1 0 14 5 1 9 2 0 54 1 0 14 1 0 44 1 0 16 73 56 18 1 0 21 1 0 13 1 0 16 chain 150581 chr3 198022430 + 176642062 176643717 L1PA3long 6157 + 4496 6157 24530 676 10 14 964 0 2 5 chain 73785 chr3 198022430 + 176653916 176655167 L1PA8A 6298 - 14 935 46628 78 0 1 10 7 0 98 2 1 210 0 1 9 315 0 299 1 0 4 0 1 85 9 1 5 1 0 118 chain 27110 chr3 198022430 + 176654339 176654645 AluYk4 311 - 5 311 95902 306 chain 18702 chr3 198022430 + 176658195 176658444 L1PA8 5853 + 5608 5853 130939 62 21 19 54 1 0 17 1 0 93 chain 71111 chr3 198022430 + 176661513 176662559 L1PB1 5432 + 4241 5279 47882 144 3 2 53 5 6 180 6 0 143 3 0 38 6 14 282 1 2 9 3 0 20 1 0 12 2 1 11 5 1 9 20 23 29 2 1 15 1 0 43 chain 15976 chr3 198022430 + 176663402 176663717 MER1B 344 + 42 344 138426 33 56 52 89 4 0 49 29 24 55 chain 22776 chr3 198022430 + 176672932 176673195 L1PA5 6144 - 0 263 116699 263 chain 94452 chr3 198022430 + 176717847 176719189 L1PB1 5432 - 28 1344 38220 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 9 0 13 3 0 15 1 0 41 4 3 16 2 1 53 2 0 8 17 12 13 2 0 20 1 0 9 21 22 31 1 0 5 9 10 184 0 2 47 1 0 182 0 1 71 1 0 32 1 6 325 0 1 16 1 0 15 1 0 67 chain 40096 chr3 198022430 + 176777488 176778035 MLT2A2 560 + 5 560 69189 10 0 4 43 17 18 116 17 16 338 0 4 6 chain 20044 chr3 198022430 + 176780660 176780926 AluSp 311 + 20 295 126995 187 2 20 61 9 0 7 chain 4696 chr3 198022430 + 176793726 176793854 MLT1A0 366 - 0 121 198573 18 59 52 51 chain 135052 chr3 198022430 + 176810713 176812748 L1PB1 5432 + 3427 5422 27010 20 4 0 31 0 1 167 0 2 65 10 1 220 0 1 29 20 21 477 2 0 16 2 0 75 33 0 10 0 33 32 14 11 37 0 3 26 0 2 7 9 8 130 0 2 207 0 8 34 17 11 16 5 4 26 4 0 8 6 4 43 9 7 14 1 0 17 3 0 22 0 1 5 1 0 5 33 22 18 3 1 5 1 0 13 3 1 24 1 0 23 1 0 8 0 2 7 3 0 8 1 0 4 chain 2937 chr3 198022430 + 176846036 176846090 Tigger6a 1079 - 204 263 226402 30 11 16 13 chain 22489 chr3 198022430 + 176861757 176862043 AluSp 311 + 0 291 118066 47 1 7 152 1 0 85 chain 20813 chr3 198022430 + 176873532 176873809 AluSp 311 + 11 294 124559 20 16 22 241 chain 23907 chr3 198022430 + 176891919 176892218 AluY 311 + 0 304 110870 50 0 4 42 0 1 207 chain 28272 chr3 198022430 + 176920802 176921416 LTR12C 1709 - 167 1058 92036 26 242 479 17 0 41 142 1 0 186 chain 5038 chr3 198022430 + 176945909 176946008 LTR12C 1709 - 991 1055 194752 35 35 0 29 chain 133825 chr3 198022430 + 176988483 176990079 LTR12C 1709 - 0 1709 27255 149 9 0 332 0 4 106 3 1 5 1 0 36 0 2 226 0 118 152 2 1 279 0 1 30 0 1 266 chain 24331 chr3 198022430 + 176991432 176991704 L1PA5 6144 - 0 272 108481 272 chain 5244 chr3 198022430 + 177006153 177006217 LTR51 675 - 0 64 192583 64 chain 8898 chr3 198022430 + 177013971 177014134 L1MC1 2226 - 176 334 166149 4 1 0 51 2 0 15 7 4 14 6 7 40 1 0 4 0 1 18 chain 6360 chr3 198022430 + 177016337 177016489 L1MA3 4352 - 3 144 182310 18 3 0 3 1 0 14 1 0 23 11 9 15 13 13 19 4 0 27 chain 28557 chr3 198022430 + 177028049 177028354 AluYb8 318 - 11 318 90932 112 0 2 193 chain 556714 chr3 198022430 + 177106558 177112539 L1PA2 6032 - 0 5984 645 4667 1 0 52 0 1 623 0 3 638 chain 130105 chr3 198022430 + 177130001 177131473 SVA_C 1631 - 6 1610 28066 467 0 1 121 0 91 146 1 44 31 3 0 703 chain 35016 chr3 198022430 + 177216960 177217368 L1PA6 6164 + 5754 6162 76169 408 chain 14825 chr3 198022430 + 177218929 177219116 L1PREC2 3366 - 712 899 141863 187 chain 32927 chr3 198022430 + 177249823 177250272 MLT2A1 477 + 0 477 79325 139 29 34 20 1 0 202 8 32 50 chain 23825 chr3 198022430 + 177252207 177252466 AluYf4 310 - 10 267 111336 174 2 0 83 chain 15894 chr3 198022430 + 177268077 177268416 L1PB1 5432 + 5114 5422 138673 24 1 0 6 1 0 12 18 12 52 2 1 11 5 4 43 2 1 16 24 12 13 3 1 10 1 0 14 2 0 13 0 1 5 1 0 5 1 0 21 1 0 13 1 0 18 chain 41283 chr3 198022430 + 177274490 177275046 MLT2A2 560 + 2 560 67552 195 4 1 99 19 21 74 0 1 118 0 2 47 chain 47445 chr3 198022430 + 177276600 177277373 L1PB1 5432 - 10 730 60872 17 1 0 13 1 0 22 1 0 23 3 1 12 11 8 15 8 0 16 3 0 15 1 0 44 1 0 15 2 1 50 4 2 9 5 1 16 1 0 4 1 0 24 37 11 379 1 4 18 chain 30063 chr3 198022430 + 177278836 177279150 AluYb8 318 + 0 314 84619 314 chain 10107 chr3 198022430 + 177284570 177284773 MER1B 344 + 56 262 160061 25 50 55 59 9 7 60 chain 65290 chr3 198022430 + 177300628 177301443 L1PA8 5853 + 5046 5853 50429 209 0 1 310 1 0 42 2 0 67 5 4 13 5 2 46 2 1 19 2 1 92 chain 3826 chr3 198022430 + 177310425 177310467 MADE1 96 - 54 96 209985 42 chain 5571 chr3 198022430 + 177334813 177334882 MSTD 398 + 329 398 189359 69 chain 30161 chr3 198022430 + 177345910 177346279 THE1B 368 - 0 368 84306 196 1 0 172 chain 236214 chr3 198022430 + 177353029 177356170 L1PB1 5432 - 330 3492 16964 479 3 0 79 10 11 327 1 0 239 8 5 204 5 26 302 0 3 5 6 3 399 0 1 5 2 0 55 0 1 66 9 12 60 3 1 41 17 19 95 2 7 62 4 8 92 7 0 57 5 0 7 1 7 484 chain 23685 chr3 198022430 + 177360992 177361284 AluSc 308 + 20 302 112118 98 1 0 161 9 0 23 chain 528766 chr3 198022430 + 177377154 177383107 L1PA4 6152 - 1 6141 4332 141 0 3 95 0 1 1246 1 0 351 1 2 796 0 1 249 0 7 1607 0 1 217 1 0 394 0 176 120 1 0 166 0 3 115 6 0 192 0 2 189 0 1 65 chain 38141 chr3 198022430 + 177383628 177384071 LTR7 482 - 7 482 71926 108 1 2 70 0 31 264 chain 260548 chr3 198022430 + 177385333 177388466 HERVH-int 3825 - 0 3825 15666 225 0 2 263 0 10 5 0 200 39 9 11 98 3 3 80 0 1 434 1 0 17 0 3 413 1 15 290 4 31 215 1 0 16 0 2 21 9 0 11 0 1 640 2 1 81 1 93 24 1 0 10 1 0 19 0 352 199 chain 38397 chr3 198022430 + 177388468 177388920 LTR7 482 - 0 482 71574 190 0 31 35 0 1 169 1 0 51 1 0 5 chain 9953 chr3 198022430 + 177438342 177438475 HSMAR2 1300 + 1148 1292 160820 14 0 12 26 1 0 92 chain 57133 chr3 198022430 + 177438622 177439311 L1PA8A 6298 - 7 692 54441 105 3 0 6 1 0 574 chain 3673 chr3 198022430 + 177452361 177452405 MER121 330 + 129 173 212335 44 chain 3899 chr3 198022430 + 177465799 177465842 MER53 195 - 128 171 208861 43 chain 44428 chr3 198022430 + 177476880 177477510 MER41B 635 + 2 633 63663 123 1 2 203 5 6 107 42 41 149 chain 12697 chr3 198022430 + 177477518 177477700 MSTA 426 - 221 425 149454 55 21 43 106 chain 33209 chr3 198022430 + 177517655 177518178 L1PA16 3655 + 2503 3066 78864 21 33 66 79 8 7 138 5 8 79 0 6 9 10 9 30 9 8 12 0 1 90 chain 81936 chr3 198022430 + 177525614 177526790 LTR12C 1709 - 0 1204 42787 84 7 6 281 1 2 29 9 6 73 11 4 17 24 0 74 0 47 47 0 2 160 0 40 79 0 2 57 36 0 116 7 14 64 chain 13898 chr3 198022430 + 177570778 177570958 L1PA7 6471 + 6286 6467 144925 23 1 0 11 2 4 143 chain 6008 chr3 198022430 + 177574506 177574603 L1PB 1623 + 1356 1453 185161 48 12 13 29 1 0 7 chain 437103 chr3 198022430 + 177583918 177589578 L1PA8 5853 + 109 5853 9122 115 0 1 76 19 7 344 2 0 10 7 6 111 0 3 151 0 1 8 7 8 105 0 1 61 0 1 167 5 6 149 0 2 647 0 4 131 8 34 710 0 3 163 10 15 98 48 100 42 4 7 279 0 1 101 13 14 11 0 2 80 7 8 387 0 1 82 2 3 133 6 0 236 1 0 187 0 1 88 2 0 74 0 2 114 13 14 350 1 0 43 3 1 55 47 45 35 1 0 17 2 1 92 chain 132306 chr3 198022430 + 177608886 177610363 SVA_D 2077 - 21 2022 27562 147 10 8 497 0 488 15 2 0 151 0 40 655 chain 335079 chr3 198022430 + 177626522 177631348 L1P2 5180 + 361 5178 12025 20 24 25 4 1 0 38 43 24 22 154 71 174 26 5 43 15 30 138 6 5 80 4 5 4 1 0 343 1 2 75 0 1 37 0 2 228 4 5 217 4 7 95 3 5 126 0 1 14 4 6 83 13 11 14 16 0 228 1 2 222 14 17 86 0 1 49 5 3 95 0 16 138 3 6 17 6 7 311 6 5 95 7 8 668 5 10 208 4 82 440 0 2 50 1 0 49 1 0 38 1 0 4 chain 3152 chr3 198022430 + 177632151 177632223 SVA_F 1814 - 716 988 221903 32 22 222 18 chain 36635 chr3 198022430 + 177632367 177632824 L1PA7 6471 + 6004 6461 74049 303 19 19 135 chain 4216 chr3 198022430 + 177670663 177670989 MER74A 558 - 24 350 204344 35 28 33 17 219 214 27 chain 34479 chr3 198022430 + 177714885 177715387 MLT2A2 560 + 0 560 76944 18 0 2 163 1 0 104 0 11 7 22 54 44 1 12 83 2 1 5 0 3 41 0 1 11 chain 191702 chr3 198022430 + 177731471 177733589 L1PA3long 6157 - 0 2124 19894 145 1 4 563 2 4 1347 0 1 60 chain 12296 chr3 198022430 + 177758852 177758993 AluYk12 309 + 19 160 151027 141 chain 19372 chr3 198022430 + 177773466 177773725 MER44A 345 - 2 263 129017 165 0 4 65 2 0 27 chain 36687 chr3 198022430 + 177838904 177839442 MLT2A2 560 - 0 560 73975 21 9 13 19 1 2 6 1 0 88 0 11 48 7 13 92 7 6 12 4 5 31 0 1 192 chain 9561 chr3 198022430 + 177847707 177847813 LTR12_ 688 + 582 688 162774 106 chain 42651 chr3 198022430 + 177847911 177848419 MER9a3 513 - 0 513 65838 34 0 1 164 0 4 153 2 1 45 0 1 110 chain 21544 chr3 198022430 + 177863772 177864080 AluSp 311 + 11 310 121986 99 17 10 83 13 11 96 chain 24147 chr3 198022430 + 177923229 177923571 THE1B 368 - 0 368 109488 80 1 3 42 35 45 30 1 0 109 0 15 44 chain 9881 chr3 198022430 + 177925618 177925737 HERVH-int 3825 - 3679 3801 161171 87 0 3 32 chain 266010 chr3 198022430 + 177925750 177929565 HERVH-int 3825 + 372 3825 15391 101 0 4 8 2 0 45 1 0 40 1 0 6 24 0 5 36 0 19 0 29 14 435 86 27 0 1 21 0 1 57 9 10 171 21 25 1044 16 15 992 0 3 255 5 0 6 4 10 41 37 38 245 0 2 34 6 11 87 chain 2060 chr3 198022430 + 177925983 177926007 HERVH-int 3825 + 754 778 204480 24 chain 2617 chr3 198022430 + 177926079 177926168 HERVH-int 3825 + 730 766 231481 19 53 0 17 chain 2670 chr3 198022430 + 177926285 177926322 HERVH-int 3825 + 436 473 230784 37 chain 3189 chr3 198022430 + 177926333 177926376 HERVH-int 3825 + 485 530 221147 11 0 2 32 chain 3361 chr3 198022430 + 177926377 177926413 HERVH-int 3825 + 530 566 217874 36 chain 2710 chr3 198022430 + 177926419 177926454 HERVH-int 3825 + 571 605 230130 9 1 0 25 chain 31391 chr3 198022430 + 177932034 177932438 LTR7 482 + 0 474 81833 69 8 46 109 0 1 41 0 31 177 chain 109414 chr3 198022430 + 177937277 177938616 L1PA8 5853 - 0 1338 34339 91 3 2 19 2 5 46 1 2 9 2 1 70 2 0 44 1 0 167 0 2 386 2 0 494 chain 24557 chr3 198022430 + 177952873 177953150 L1PA5 6144 + 5850 6127 107208 277 chain 34022 chr3 198022430 + 177959064 177959465 L1PA7 6471 + 6057 6459 77589 258 0 1 143 chain 3889 chr3 198022430 + 177972601 177972665 LTR41 747 + 242 340 209039 29 8 42 27 chain 45571 chr3 198022430 + 177982829 177983403 L1PA8A 6298 - 7 565 62441 84 0 1 19 2 3 186 25 7 258 chain 41866 chr3 198022430 + 177983403 177983914 L1PA8A 6298 + 5175 5690 66487 309 1 0 82 0 2 31 0 3 88 chain 47786 chr3 198022430 + 178029591 178030151 MLT2A2 560 + 0 560 60627 560 chain 20614 chr3 198022430 + 178062300 178062743 L1PA13 3608 + 113 497 125248 23 2 0 6 2 1 20 1 0 14 55 41 65 1 0 6 1 2 137 1 0 6 4 11 12 52 6 18 1 0 16 chain 61528 chr3 198022430 + 178066625 178067369 LTR12 884 - 0 884 52103 131 0 10 346 0 22 37 0 1 165 0 107 65 chain 511071 chr3 198022430 + 178078604 178085077 L1PA7 6471 + 3 6468 6063 145 0 6 6 6 0 234 0 1 15 2 5 44 0 1 188 3 4 152 4 3 426 0 7 6 8 1 512 1 0 403 0 1 462 26 7 61 0 2 712 1 0 421 2 1 6 0 1 95 1 2 366 3 4 526 14 4 116 1 0 38 0 16 107 7 4 81 0 1 158 2 0 271 1 4 71 4 3 616 8 9 68 1 0 72 chain 92795 chr3 198022430 + 178087860 178089181 L1PB 1623 - 37 1311 38714 11 2 0 22 51 30 7 3 0 14 27 19 29 2 1 7 1 0 135 21 11 48 0 1 105 0 2 357 1 0 302 1 0 74 1 0 8 1 0 91 chain 26327 chr3 198022430 + 178096811 178097118 AluY 311 + 0 304 98711 64 2 0 67 3 0 144 0 2 27 chain 3876 chr3 198022430 + 178112469 178112515 L1ME3A 1206 + 897 943 209218 46 chain 41750 chr3 198022430 + 178142005 178142477 MER9a2 513 - 0 472 66962 472 chain 4430 chr3 198022430 + 178161087 178161141 MER45A 178 + 69 123 201588 54 chain 127928 chr3 198022430 + 178178942 178180507 THE1A-int 1579 + 0 1579 28589 63 0 6 152 0 6 50 0 1 83 7 6 214 1 3 58 3 2 639 2 3 195 1 0 25 0 1 72 chain 27632 chr3 198022430 + 178180507 178180859 THE1A 353 + 0 353 94258 49 0 1 60 1 0 190 0 1 52 chain 78967 chr3 198022430 + 178187048 178188119 L1PA8 5853 - 0 1075 44075 94 22 20 44 8 7 9 1 0 71 2 0 44 1 0 132 0 2 44 4 5 103 0 2 33 0 3 163 1 0 62 0 7 8 4 0 21 0 1 200 chain 14026 chr3 198022430 + 178188119 178188286 L1PA8 5853 + 4621 4789 143622 124 0 1 43 chain 21249 chr3 198022430 + 178232726 178233011 L1PA16 3655 - 256 540 123026 18 1 0 15 0 1 164 4 3 83 chain 21288 chr3 198022430 + 178233586 178233868 L1PA16 3655 + 2557 2840 122908 80 0 1 37 2 1 61 6 7 96 chain 24208 chr3 198022430 + 178251899 178252203 AluSp 311 - 0 302 109162 159 1 4 6 3 0 10 2 0 123 chain 31643 chr3 198022430 + 178259540 178260018 LTR10F 562 + 0 560 81417 41 0 2 72 35 1 18 1 29 11 0 80 11 21 27 268 chain 36341 chr3 198022430 + 178289317 178289798 L1PA8 5853 - 0 475 74443 92 2 1 19 2 1 45 2 1 12 1 0 74 2 0 46 1 0 5 1 2 177 chain 523020 chr3 198022430 + 178293836 178300295 L1PA7 6471 + 0 6457 4861 244 8 11 6 0 1 140 1 2 619 43 21 96 10 8 164 0 1 293 19 10 17 0 2 924 7 8 70 1 2 67 0 4 386 0 4 116 0 1 309 1 0 303 0 1 49 0 1 149 3 0 248 0 2 18 8 10 112 0 2 585 8 9 605 1 2 12 1 0 209 0 6 282 1 0 151 1 2 34 3 4 135 chain 30656 chr3 198022430 + 178305539 178305885 L1PA4 6152 - 12 357 83107 137 1 0 208 chain 24488 chr3 198022430 + 178313216 178313591 THE1C 375 + 0 373 107613 87 3 4 69 5 4 15 20 20 41 2 1 109 1 0 23 chain 20100 chr3 198022430 + 178318503 178318739 L1PA7 6471 - 413 655 126828 48 0 2 147 0 4 41 chain 32059 chr3 198022430 + 178318739 178319136 L1PA7 6471 + 6067 6464 80759 254 3 2 128 0 1 12 chain 10271 chr3 198022430 + 178324241 178324465 MLT1A0-int 1658 + 1351 1645 159279 21 51 46 96 19 92 29 0 2 8 chain 116889 chr3 198022430 + 178327759 178331514 L1MA1 4479 - 645 4232 32165 8 1 0 29 1 2 40 1 0 16 2 0 24 1 0 130 0 7 58 3 0 24 0 3 9 0 15 80 3 0 77 18 13 36 4 0 12 1 0 94 16 14 51 13 15 66 0 16 10 2 0 27 1 0 83 13 11 25 10 256 222 0 12 190 4 0 39 1948 1498 9 1 4 206 1 2 39 1 11 72 2 0 32 chain 20047 chr3 198022430 + 178332146 178332439 THE1B 368 - 65 368 126985 60 40 51 23 1 0 169 chain 119761 chr3 198022430 + 178350480 178352059 THE1C-int 1605 - 9 1590 31133 342 4 0 242 6 7 52 1 0 242 32 20 239 5 12 105 0 6 5 0 1 202 6 10 96 chain 25772 chr3 198022430 + 178352075 178352451 THE1C 375 - 0 375 101003 26 8 7 155 2 3 38 6 4 75 5 6 61 chain 6322 chr3 198022430 + 178354082 178354180 L1PB1 5432 + 5332 5424 182626 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 85307 chr3 198022430 + 178367249 178368311 L1PA7 6471 - 2595 3687 41414 40 3 0 74 1 2 157 14 13 17 0 3 17 0 4 52 0 21 532 0 5 155 chain 84760 chr3 198022430 + 178368321 178369353 L1PA7 6471 + 3932 4955 41612 523 0 1 152 21 1 50 0 10 286 chain 57469 chr3 198022430 + 178369354 178370038 L1PA7 6471 + 4955 5637 54259 593 4 3 70 1 0 16 chain 17522 chr3 198022430 + 178370038 178370262 L1PA7 6471 + 6242 6469 134202 67 4 5 142 0 2 11 chain 38922 chr3 198022430 + 178378784 178379234 L1PA7 6471 - 8 459 70838 387 0 1 63 chain 6259 chr3 198022430 + 178396846 178396913 L1PA2 6032 - 5 72 183098 67 chain 23419 chr3 198022430 + 178402333 178402625 AluSp 311 + 0 288 113546 132 14 10 146 chain 60845 chr3 198022430 + 178418634 178419315 L1PA5 6144 - 889 1569 52409 633 1 0 47 chain 78773 chr3 198022430 + 178419317 178420223 L1PA5 6144 + 5245 6135 44161 385 14 0 496 2 0 9 chain 10521 chr3 198022430 + 178424682 178424798 L1PA7 6471 + 6345 6461 158159 116 chain 122994 chr3 198022430 + 178437780 178439142 L1PA4 6152 - 11 1380 30050 930 0 7 432 chain 13375 chr3 198022430 + 178443094 178443340 L1PA17 2846 + 1317 1561 146801 75 45 45 85 0 1 5 11 8 25 chain 24047 chr3 198022430 + 178462932 178463287 THE1B 368 - 0 368 110060 75 1 0 84 1 5 12 30 26 32 4 3 76 0 15 40 chain 125952 chr3 198022430 + 178463287 178464855 THE1B-int 1605 - 0 1605 29115 45 0 1 55 0 1 5 1 0 104 0 1 273 0 1 411 6 15 231 0 1 8 0 24 429 chain 25654 chr3 198022430 + 178464855 178465206 THE1B 368 - 0 368 101475 117 0 1 59 2 0 22 1 0 25 9 13 76 1 16 39 chain 39488 chr3 198022430 + 178499577 178500000 L1PA2 6032 - 0 423 70034 423 chain 35278 chr3 198022430 + 178501404 178501804 L1P1 4361 - 42 440 75820 14 1 0 155 1 0 229 chain 9654 chr3 198022430 + 178504429 178504538 L1PA4 6152 + 6045 6152 162329 101 2 0 6 chain 3275 chr3 198022430 + 178523204 178523242 MIR3 191 - 92 130 219438 38 chain 22174 chr3 198022430 + 178530028 178530281 L1PA4 6152 - 0 255 119476 13 3 5 237 chain 19474 chr3 198022430 + 178532434 178532790 L1PA17 2846 - 154 506 128734 25 9 20 12 1 0 35 41 36 29 1 0 15 14 10 8 4 0 162 chain 552558 chr3 198022430 + 178577742 178583767 L1PA2 6032 + 6 6032 1124 1114 0 1 4745 5 0 7 0 5 154 chain 37504 chr3 198022430 + 178595979 178596507 L1PB1 5432 - 319 896 72808 10 1 0 242 8 57 6 0 2 81 5 7 82 3 0 90 chain 162763 chr3 198022430 + 178602180 178604650 L1PA13 3608 + 1137 3548 22972 368 3 7 288 27 0 23 35 8 47 1 12 13 1 2 31 1 0 8 1 0 80 4 5 6 1 0 43 0 2 70 23 22 45 0 3 7 12 9 25 3 15 4 0 1 62 2 0 82 5 6 9 0 1 81 5 6 90 1 0 95 9 8 411 1 0 28 1 0 73 0 2 5 1 0 33 2 0 63 1 0 20 3 0 12 0 1 18 1 0 7 4 2 47 2 0 5 7 5 15 1 0 18 26 18 14 1 0 4 23 14 12 chain 4313 chr3 198022430 + 178613638 178613690 MER41B 635 - 97 148 203062 47 1 0 4 chain 7606 chr3 198022430 + 178636039 178636132 L1PB4 2604 + 671 764 173505 93 chain 202269 chr3 198022430 + 178643435 178645748 L1PA5 6144 + 3808 6137 19043 380 0 1 431 1 0 121 0 15 471 0 1 909 chain 23056 chr3 198022430 + 178646537 178646899 THE1D 372 + 0 359 115375 56 11 1 61 0 8 67 9 3 42 2 8 84 8 7 22 chain 199464 chr3 198022430 + 178646909 178650153 L1PA14 3548 + 612 3456 19245 31 25 30 281 0 6 141 35 28 111 0 1 320 9 0 65 387 14 108 1 0 350 2 3 97 1 0 4 11 12 7 0 2 74 0 1 37 0 1 199 1 0 65 4 0 89 4 3 131 0 3 114 2 0 8 12 1 8 0 7 26 19 15 85 0 4 15 13 9 11 6 4 4 1 0 84 1 0 5 1 0 5 0 1 46 1 4 50 1 0 11 5 1 35 4 2 11 7 0 6 1 0 17 1 0 5 0 3 33 chain 20653 chr3 198022430 + 178652424 178652772 THE1B 368 - 0 368 125126 56 7 6 64 46 66 53 19 20 103 chain 21110 chr3 198022430 + 178654322 178654552 L1PA3long 6157 - 4 234 123526 230 chain 503016 chr3 198022430 + 178654660 178660237 L1PA3long 6157 - 5 5717 6669 838 0 4 62 1 0 1125 0 5 700 12 4 225 0 1 394 0 4 725 6 7 817 0 1 336 0 128 336 chain 22770 chr3 198022430 + 178663190 178663583 MSTA 426 - 0 419 116724 131 1 0 5 0 1 16 46 46 58 35 61 101 chain 23274 chr3 198022430 + 178666564 178667054 Tigger3b 1229 - 379 898 114328 74 47 197 14 129 9 8 1 0 217 chain 7493 chr3 198022430 + 178670161 178670361 L1PB1 5432 + 5251 5422 174190 30 2 1 13 37 17 11 12 9 14 2 0 24 1 0 15 7 6 13 1 0 18 chain 104779 chr3 198022430 + 178676427 178677743 L1PB1 5432 - 330 1597 35550 256 2 0 225 3 0 417 45 0 241 0 1 127 chain 27100 chr3 198022430 + 178691976 178692317 THE1B 368 + 0 356 95940 40 0 15 118 1 0 11 1 0 118 0 2 52 chain 219064 chr3 198022430 + 178701168 178703748 L1PA7 6471 - 4 2621 17940 330 0 1 67 0 1 205 0 4 231 8 11 1040 0 13 48 0 1 226 0 1 38 0 19 232 6 0 149 chain 12729 chr3 198022430 + 178703749 178703903 L1PA7 6471 + 3698 3853 149334 131 0 1 23 chain 4731 chr3 198022430 + 178709359 178709413 L1PA7 6471 + 6410 6464 198156 54 chain 51855 chr3 198022430 + 178709907 178710590 PABL_B 668 - 0 668 57717 137 0 2 184 0 1 41 1 2 12 0 1 44 21 0 132 0 1 111 chain 127772 chr3 198022430 + 178749825 178751291 SVA_B 1603 + 55 1597 28624 31 2 3 804 0 83 38 1 0 442 8 1 140 chain 516901 chr3 198022430 + 178756382 178762823 L1PA6 6164 + 3 6160 5496 182 0 1 331 1 3 47 1 0 338 1 5 176 0 3 218 0 1 105 4 0 32 0 1 565 0 4 28 0 1 73 0 3 205 6 0 680 1 0 164 1 3 13 2 0 4 0 1 116 1 0 313 0 1 4 0 1 5 0 10 61 2 1 252 0 1 354 0 1 369 1 0 148 0 2 463 0 4 48 8 0 109 4 9 78 0 1 253 308 0 366 chain 330366 chr3 198022430 + 178765656 178770621 L1PB1 5432 + 505 5156 12190 46 19 22 120 0 4 69 4 3 615 65 61 125 5 7 357 0 6 122 0 1 260 0 12 30 322 0 53 0 1 91 1 0 215 0 8 28 0 3 6 9 8 64 3 0 159 10 9 136 18 0 47 0 1 347 2 1 122 10 0 52 8 5 130 0 1 80 35 0 30 0 10 287 8 11 5 3 0 92 0 5 46 7 34 138 0 2 35 2 0 81 1 0 204 4 0 98 8 10 22 10 25 36 10 3 7 1 0 25 1 0 6 1 0 12 chain 41050 chr3 198022430 + 178772378 178772891 LTR17 781 + 255 781 67831 44 10 0 27 1 2 390 1 23 40 chain 352920 chr3 198022430 + 178772921 178777302 HERV17-int 4347 + 279 4347 11528 346 3 0 411 6 9 308 0 1 123 15 8 475 0 1 536 0 1 155 3 0 274 7 12 397 0 5 35 0 3 80 0 2 158 320 0 160 1 0 568 chain 26720 chr3 198022430 + 178777616 178777943 LTR17 781 + 0 326 97262 118 0 9 33 0 1 135 1 0 3 10 0 27 chain 4101 chr3 198022430 + 178797975 178798045 MLT1F1 559 + 363 441 205936 19 12 20 39 chain 11761 chr3 198022430 + 178799616 178799783 LTR23 429 - 26 197 153212 112 13 17 42 chain 133890 chr3 198022430 + 178837308 178839888 SVA_F 1814 + 335 1814 27241 553 2 0 9 0 1 50 275 15 249 840 0 602 chain 15308 chr3 198022430 + 178837925 178838197 SVA_F 1814 + 966 1139 110818 11 49 0 69 94 44 49 chain 4261 chr3 198022430 + 178837936 178837985 SVA_F 1814 + 1153 1202 157061 49 chain 2243 chr3 198022430 + 178838054 178838106 SVA_F 1814 + 1222 1274 150399 52 chain 3584 chr3 198022430 + 178838107 178838146 SVA_F 1814 + 972 1011 213928 39 chain 20586 chr3 198022430 + 178838446 178838849 SVA_F 1814 + 1036 1291 77831 136 147 0 102 1 0 17 chain 2831 chr3 198022430 + 178838582 178838668 SVA_F 1814 + 932 1033 123110 15 0 15 71 chain 28405 chr3 198022430 + 178838922 178839233 SVA_F 1814 + 962 1269 91556 215 3 0 10 1 0 82 chain 3243 chr3 198022430 + 178839233 178839266 SVA_F 1814 + 1093 1126 155054 33 chain 552381 chr3 198022430 + 178844523 178850648 L1PA3long 6157 - 8 6153 1148 12 0 2 125 1 5 455 1 0 88 0 1 213 1 0 1657 0 1 310 0 5 91 0 2 788 0 4 944 0 1 251 1 4 396 2 1 789 chain 28360 chr3 198022430 + 178920727 178921027 AluYa5 310 - 10 310 91731 300 chain 31684 chr3 198022430 + 178928709 178929170 Tigger2b_Pri 1066 + 0 464 81348 85 1 0 25 43 47 307 chain 97197 chr3 198022430 + 178948821 178950645 L1PB3 3668 - 52 1700 37514 4 1 0 13 7 4 13 24 38 15 4 2 24 1 0 7 37 23 34 2 1 47 18 12 36 0 11 42 1 0 208 0 2 49 326 5 19 5 6 14 0 2 148 0 1 169 1 0 94 0 5 66 23 26 109 10 7 45 4 136 70 5 12 129 chain 10387 chr3 198022430 + 178966533 178967166 Tigger2a 444 - 87 236 158756 45 0 5 29 1 0 33 488 0 37 chain 86265 chr3 198022430 + 178980074 178981331 LTR12C 1709 - 0 1709 41052 75 0 131 162 0 1 4 1 0 108 11 4 14 26 2 90 16 13 29 0 2 89 0 278 127 4 5 194 0 43 34 37 39 147 25 54 64 chain 44685 chr3 198022430 + 178992116 178992642 L1PA8A 6298 - 8 528 63393 102 7 0 228 0 1 189 chain 12452 chr3 198022430 + 179000133 179000330 L1M1 2793 + 2499 2685 150453 9 0 1 37 1 0 16 20 12 7 0 1 46 1 0 46 3 0 11 chain 19503 chr3 198022430 + 179002911 179003342 L1MA3 4352 + 3785 4192 128648 40 0 8 9 19 18 39 17 18 51 2 0 85 97 66 13 1 2 58 chain 11714 chr3 198022430 + 179003421 179003590 L1PA8 5853 - 0 166 153406 93 6 5 14 2 1 48 1 0 5 chain 129774 chr3 198022430 + 179008081 179009484 SVA_F 1814 - 0 1814 28136 643 0 1 20 0 330 18 0 80 722 chain 27412 chr3 198022430 + 179031066 179031371 AluYf4 310 + 0 303 94927 96 2 0 207 chain 2979 chr3 198022430 + 179034528 179034562 LTR5 62 - 24 58 225461 34 chain 24395 chr3 198022430 + 179043399 179043692 AluYk4 311 + 0 303 108107 144 0 12 133 2 0 14 chain 6866 chr3 198022430 + 179048801 179048891 L1MC3 1789 + 1095 1210 178449 16 0 25 74 chain 10139 chr3 198022430 + 179061027 179061196 MER30 238 + 57 236 159906 46 31 35 14 0 6 78 chain 18103 chr3 198022430 + 179072888 179073212 MER41B 635 - 271 635 132593 22 13 12 16 40 65 64 5 20 38 1 2 125 chain 4819 chr3 198022430 + 179074222 179074327 MER21C 908 + 584 838 197136 37 31 180 37 chain 145382 chr3 198022430 + 179099862 179101512 L1PA5 6144 - 2 1652 25271 16 1 0 831 0 4 543 11 9 117 1 0 130 chain 9868 chr3 198022430 + 179101514 179101626 L1PA5 6144 + 4371 4483 161243 112 chain 3940 chr3 198022430 + 179123556 179123645 MER46C 351 - 0 83 208280 13 0 1 4 31 24 41 chain 7231 chr3 198022430 + 179181879 179181963 MER4B 649 + 0 84 175881 84 chain 7500 chr3 198022430 + 179188567 179188685 Tigger3b 1229 + 621 737 174158 82 16 14 20 chain 27196 chr3 198022430 + 179196495 179196907 MSTA 426 + 0 426 95609 99 5 6 25 23 29 79 4 3 59 10 18 108 chain 21002 chr3 198022430 + 179203757 179204026 AluSg7 307 + 27 298 123908 104 0 1 69 3 4 93 chain 5004 chr3 198022430 + 179205495 179205555 MER49 923 + 339 399 195099 60 chain 161950 chr3 198022430 + 179216565 179218805 L1PA7 6471 - 10 1938 23072 254 1 3 94 8 0 6 319 0 332 7 18 115 1 2 20 1 0 69 2 0 879 0 4 132 chain 25605 chr3 198022430 + 179234856 179235259 LTR7 482 + 0 474 101702 31 46 84 109 9 41 154 13 14 41 chain 274199 chr3 198022430 + 179235270 179238686 HERVH-int 3825 + 0 3825 14969 333 1 0 31 1 2 107 15 17 31 10 9 13 0 71 11 7 145 9 1 0 408 7 0 42 15 0 125 0 7 211 5 0 434 0 4 205 0 4 236 1 2 229 0 1 50 2 0 134 0 2 247 0 210 495 chain 25398 chr3 198022430 + 179239868 179240265 LTR7 482 + 0 477 102692 50 27 65 33 0 1 4 1 0 58 0 11 26 1 31 136 17 18 44 chain 16243 chr3 198022430 + 179240417 179240595 HERVH-int 3825 - 0 178 137645 178 chain 13550 chr3 198022430 + 179255221 179255366 L1PA3long 6157 + 6012 6157 146172 145 chain 10220 chr3 198022430 + 179256555 179256953 MLT1C 463 + 63 418 159510 62 57 49 20 181 150 59 4 0 15 chain 13506 chr3 198022430 + 179261015 179261187 L1MA4 2864 - 171 341 146339 22 2 0 148 chain 3153 chr3 198022430 + 179262706 179262741 MSTC 436 + 401 436 221875 35 chain 27379 chr3 198022430 + 179264844 179265447 L1M1 2793 + 618 1123 95026 17 80 26 10 0 2 29 106 74 21 8 1 35 2 0 6 1 0 56 3 1 5 1 0 102 1 0 120 chain 6670 chr3 198022430 + 179271738 179272016 Tigger2b_Pri 1066 - 718 1013 179909 25 37 39 11 3 0 44 126 144 32 chain 5587 chr3 198022430 + 179285204 179285272 MLT1B 390 - 313 381 189209 68 chain 3762 chr3 198022430 + 179299295 179299355 MER3 215 - 136 199 210915 13 6 9 41 chain 3698 chr3 198022430 + 179323195 179323235 PABL_A 660 - 42 82 211965 40 chain 6097 chr3 198022430 + 179323481 179323575 ORSL 269 + 161 260 184436 37 8 13 49 chain 32154 chr3 198022430 + 179326281 179326675 PABL_A 660 - 74 472 80604 75 0 2 280 0 2 39 chain 4845 chr3 198022430 + 179326847 179326906 MER6B 211 - 122 181 196839 59 chain 8219 chr3 198022430 + 179332564 179332667 U13_ 108 - 5 108 169834 103 chain 130390 chr3 198022430 + 179336998 179338459 L1PA4 6152 - 0 1475 27991 6 0 5 47 0 4 355 0 2 335 0 1 234 0 1 241 0 1 243 chain 5446 chr3 198022430 + 179344643 179344706 L1MA4 2864 - 851 914 190561 63 chain 40355 chr3 198022430 + 179344987 179345462 LTR15 485 + 6 484 68799 120 1 0 150 4 8 200 chain 23294 chr3 198022430 + 179354299 179354582 AluSc5 308 - 24 308 114233 184 0 1 99 chain 25252 chr3 198022430 + 179366930 179367238 AluSp 311 - 3 310 103467 42 8 7 258 chain 25588 chr3 198022430 + 179391687 179391980 AluSp 311 - 19 311 101787 118 1 0 174 chain 21669 chr3 198022430 + 179392705 179392977 AluY 311 + 28 297 121501 25 9 5 74 0 1 164 chain 25685 chr3 198022430 + 179393707 179394049 THE1C 375 + 0 340 101356 37 1 0 149 0 1 41 13 9 22 0 2 79 chain 18741 chr3 198022430 + 179395089 179395353 AluSp 311 + 0 267 130848 22 0 1 29 27 29 186 chain 6898 chr3 198022430 + 179398196 179398297 Tigger4a 237 + 7 107 178209 74 7 6 20 chain 6677 chr3 198022430 + 179399010 179399133 LTR6A 649 - 0 122 179850 24 1 0 24 1 0 15 18 20 27 1 0 12 chain 23353 chr3 198022430 + 179407168 179407472 AluSg 306 + 4 304 113911 121 2 1 164 3 0 14 chain 11287 chr3 198022430 + 179443670 179443817 THE1B 368 - 219 368 155103 29 0 1 9 1 2 108 chain 154765 chr3 198022430 + 179444953 179446792 SVA_D 2077 - 0 2077 24009 18 2 0 519 0 1 97 0 95 113 15 97 12 4 0 81 0 1 95 45 5 25 2 0 15 2 0 9 0 40 89 0 40 594 0 27 44 0 2 58 chain 3311 chr3 198022430 + 179445909 179445954 SVA_D 2077 - 775 820 86063 45 chain 27800 chr3 198022430 + 179478070 179478370 AluYk12 309 - 9 309 93697 300 chain 23154 chr3 198022430 + 179488397 179488682 AluSc5 308 - 15 297 114877 170 3 0 112 chain 6010 chr3 198022430 + 179492643 179492731 LTR12C 1709 - 800 1047 185138 10 0 81 12 0 78 66 chain 4328 chr3 198022430 + 179492786 179492839 LTR12C 1709 - 942 995 202856 53 chain 2510 chr3 198022430 + 179492916 179493056 LTR12C 1709 - 511 813 233028 22 96 258 22 chain 6947 chr3 198022430 + 179493830 179493907 MSTB 430 - 353 430 177847 77 chain 5178 chr3 198022430 + 179523063 179523129 MER53 195 + 0 66 193249 66 chain 6166 chr3 198022430 + 179523445 179523526 MER53 195 - 104 195 183825 67 0 10 14 chain 28771 chr3 198022430 + 179531452 179531763 AluYb8 318 - 7 318 90014 311 chain 57545 chr3 198022430 + 179533861 179534526 L1PA7 6471 + 5788 6461 54212 188 0 7 148 0 1 329 chain 4221 chr3 198022430 + 179552571 179552681 MLT1C 463 + 0 111 204285 20 47 48 43 chain 28130 chr3 198022430 + 179581623 179581977 THE1B 368 + 0 368 92538 40 0 15 110 8 7 196 chain 19496 chr3 198022430 + 179581977 179582573 L1MA8 2339 + 1794 2333 128665 29 21 17 35 49 51 8 2 0 21 6 0 6 4 10 34 5 4 108 28 4 43 3 0 19 137 110 7 0 2 31 chain 9205 chr3 198022430 + 179587688 179587803 MER57B1 401 + 28 143 164538 115 chain 3737 chr3 198022430 + 179603458 179603735 MLT1C 463 + 170 463 211356 25 2 0 10 204 220 28 0 2 8 chain 36782 chr3 198022430 + 179626259 179626675 L1PA4 6152 - 1 418 73824 112 0 1 304 chain 3243 chr3 198022430 + 179641250 179641290 MER5A 189 + 32 72 220141 40 chain 9286 chr3 198022430 + 179650565 179650910 L1MA8 2339 - 15 309 164135 17 62 44 7 1 0 15 1 0 8 46 39 20 13 17 38 26 0 15 11 9 65 chain 22130 chr3 198022430 + 179668041 179668307 L1PA5 6144 + 5878 6140 119662 122 4 0 140 chain 28944 chr3 198022430 + 179712402 179712795 MLT2A1 477 + 0 397 89256 31 1 6 132 4 1 11 0 1 22 20 21 172 chain 470627 chr3 198022430 + 179713091 179718713 HERVL-int 5654 + 0 5654 8014 379 7 10 289 8 7 69 0 2 147 1 16 858 0 1 275 0 11 86 0 3 1993 5 6 461 15 1 284 6 10 105 0 1 204 1 0 27 8 9 94 0 4 191 0 1 51 0 1 58 chain 35303 chr3 198022430 + 179718713 179719212 MLT2A1 477 + 0 477 75793 169 4 1 52 5 6 157 10 0 13 7 1 7 1 0 7 2 0 7 4 3 54 chain 26526 chr3 198022430 + 179724391 179724709 THE1A 353 - 33 350 97950 210 1 0 107 chain 125884 chr3 198022430 + 179724712 179726323 THE1A-int 1579 - 0 1579 29134 45 15 1 533 18 1 282 0 1 418 0 1 68 5 0 212 0 2 15 chain 26998 chr3 198022430 + 179726323 179726679 THE1A 353 - 0 353 96289 243 9 8 17 1 0 47 11 10 28 chain 20187 chr3 198022430 + 179732047 179732274 AluY 311 + 69 297 126570 63 0 1 164 chain 7925 chr3 198022430 + 179742044 179742135 AluY 311 + 29 120 171475 91 chain 145484 chr3 198022430 + 179760035 179761630 L1PA3long 6157 + 4562 6157 25259 1595 chain 26099 chr3 198022430 + 179773693 179773991 L1PA4 6152 + 5849 6148 99623 43 0 1 255 chain 22058 chr3 198022430 + 179792884 179793163 AluY 311 + 27 299 119976 106 13 6 160 chain 2610 chr3 198022430 + 179795168 179795234 L1MCb 1641 + 558 623 231559 17 23 22 26 chain 59724 chr3 198022430 + 179806409 179807119 L1PA7 6471 + 5755 6466 52980 558 0 1 82 12 11 50 0 1 8 chain 39643 chr3 198022430 + 179808445 179809148 L1PA14 3548 - 108 711 69831 25 1 0 17 1 0 6 1 0 15 4 2 34 4 0 10 1 0 110 1 0 84 9 6 13 8 4 107 86 9 44 3 1 26 3 2 5 2 0 83 chain 3084 chr3 198022430 + 179813175 179813237 MADE2 80 + 0 63 223246 23 14 15 25 chain 125519 chr3 198022430 + 179821486 179823269 L1PA11 4918 + 2900 4628 29238 114 12 24 374 3 0 248 1 0 70 1 0 277 28 0 58 0 2 260 1 0 6 4 0 60 13 14 68 3 1 12 1 0 19 133 104 17 chain 28075 chr3 198022430 + 179828563 179828873 L1PA2 6032 - 1 313 92738 19 0 2 291 chain 97353 chr3 198022430 + 179837978 179839111 L1PA5 6144 - 2 1132 37470 146 2 0 567 1 0 142 2 1 255 0 1 18 chain 19729 chr3 198022430 + 179840956 179841293 THE1C 375 + 0 335 128015 19 1 0 60 6 7 41 0 17 9 20 0 19 6 7 8 1 0 7 3 4 12 0 3 5 3 0 117 chain 20719 chr3 198022430 + 179845334 179845691 LTR9B 643 - 0 353 124891 32 24 23 125 52 50 91 1 0 32 chain 19085 chr3 198022430 + 179845691 179845925 AluSc 308 + 38 272 129862 234 chain 37840 chr3 198022430 + 179846890 179847370 LTR10F 562 - 0 562 72351 127 7 6 125 5 7 66 3 84 147 chain 25270 chr3 198022430 + 179848650 179849002 LTR7B 505 + 0 505 103369 105 0 10 51 10 112 11 2 1 21 1 42 64 0 2 20 4 3 63 chain 33566 chr3 198022430 + 179867939 179868580 L1MA3 4352 - 0 646 78295 21 3 0 3 1 0 11 1 0 29 39 34 26 4 0 64 84 74 196 10 40 29 1 0 119 chain 8553 chr3 198022430 + 179879674 179879765 5S 121 - 30 121 167998 91 chain 37394 chr3 198022430 + 179885069 179885536 L1PA5 6144 + 5670 6135 72961 272 7 4 46 5 6 137 chain 73909 chr3 198022430 + 179887859 179888676 L1PA3long 6157 + 5343 6157 46560 809 3 0 5 chain 22600 chr3 198022430 + 179920176 179920457 LTR32 486 - 198 479 117587 281 chain 24858 chr3 198022430 + 179922967 179923243 L1PA4 6152 + 5864 6146 105580 264 0 6 12 chain 15894 chr3 198022430 + 179949009 179949235 MER61-int 3695 + 1980 2208 138677 69 14 11 77 1 2 16 0 4 49 chain 118469 chr3 198022430 + 179950957 179952492 THE1B-int 1605 - 6 1563 31627 400 5 0 115 1 0 68 13 14 191 4 0 231 8 13 110 0 25 289 0 1 100 chain 26127 chr3 198022430 + 179952523 179952869 THE1B 368 - 2 368 99494 47 0 10 108 5 1 32 1 0 109 0 15 44 chain 62479 chr3 198022430 + 179955062 179955760 L1PA4 6152 + 5452 6151 51687 365 0 1 333 chain 126219 chr3 198022430 + 179959298 179961309 L1PB1 5432 - 30 1850 29025 11 1 0 21 1 0 24 69 54 12 1 0 43 1 0 16 2 1 53 241 64 50 16 16 222 8 5 88 7 8 71 1 0 13 1 2 197 0 7 156 10 12 47 1 0 335 0 2 145 2 0 145 chain 6427 chr3 198022430 + 179975417 179975488 L1PA3long 6157 + 6085 6156 181812 71 chain 66001 chr3 198022430 + 179978775 179979879 L1MA1 4479 + 3074 4148 50097 41 0 3 22 1 2 10 3 1 25 9 5 57 12 11 12 5 0 75 26 29 14 0 2 5 3 1 129 2 0 137 2 0 60 1 0 10 16 14 16 1 0 71 1 0 20 16 9 4 1 0 88 1 0 5 3 0 126 1 0 22 11 9 33 1 0 6 chain 159551 chr3 198022430 + 179988015 179989796 L1PA3long 6157 - 0 1778 23391 15 3 0 118 0 3 720 0 1 779 4 0 142 chain 28739 chr3 198022430 + 180010622 180010921 AluYk12 309 + 0 299 90176 299 chain 28660 chr3 198022430 + 180011223 180011531 AluYg6 310 - 2 310 90485 308 chain 11746 chr3 198022430 + 180014749 180014881 L1PA5 6144 + 6012 6144 153269 132 chain 31951 chr3 198022430 + 180039675 180040442 MLT2A1 477 - 0 477 80939 8 0 4 29 5 0 9 0 44 178 0 1 24 1 0 1 330 0 9 4 1 169 chain 13741 chr3 198022430 + 180051161 180051345 L1P3 4156 - 760 939 145464 61 13 8 110 chain 37191 chr3 198022430 + 180051345 180051847 L1PA8 5853 + 5354 5853 73245 40 0 2 123 0 3 40 1 0 47 2 0 70 1 0 7 17 15 39 2 1 19 1 0 93 chain 25933 chr3 198022430 + 180064991 180065351 THE1C 375 - 0 375 100288 25 1 0 72 6 8 92 3 6 38 0 11 123 chain 43425 chr3 198022430 + 180079187 180079694 L1PA7 6471 - 11 519 64901 151 0 1 356 chain 513169 chr3 198022430 + 180085145 180091310 L1PA6 6164 + 0 6162 5867 410 2 1 5 0 1 43 6 5 843 5 6 77 5 0 786 2 1 92 1 3 59 1 3 25 3 0 338 0 1 496 1 2 496 0 1 258 0 1 443 3 0 338 32 24 232 0 1 540 0 8 623 chain 135862 chr3 198022430 + 180091892 180093379 L1PA3long 6157 + 4668 6157 26868 710 1 0 643 0 3 133 chain 15847 chr3 198022430 + 180093697 180094038 THE1D 372 + 0 350 138807 56 22 16 36 1 0 4 0 1 26 96 111 100 chain 46047 chr3 198022430 + 180098535 180099042 L1PA3long 6157 - 380 891 61996 469 0 4 38 chain 35364 chr3 198022430 + 180099042 180099423 L1PA3long 6157 + 5776 6157 75713 381 chain 64596 chr3 198022430 + 180125269 180126008 L1PA5 6144 + 5406 6144 50749 5 2 0 592 0 4 131 3 0 6 chain 97149 chr3 198022430 + 180142699 180143782 L1PA3long 6157 - 0 1084 37502 151 1 2 931 chain 249942 chr3 198022430 + 180143782 180146534 L1PA3long 6157 + 2318 5073 16257 1150 0 2 454 0 1 1148 chain 491473 chr3 198022430 + 180166259 180203638 L1PA3long 6157 + 2 6156 7296 6 4 0 952 0 2 1357 0 1 896 0 1 251 0 2 966 9178 0 487 0 1 437 22152 101 4 0 1 689 chain 54803 chr3 198022430 + 180170693 180171315 L1PA3long 6157 + 5158 6157 55840 55 0 18 325 0 359 242 chain 11644 chr3 198022430 + 180177435 180177669 MLT2B2 565 - 310 565 153725 23 12 22 11 11 0 38 21 25 49 9 22 37 0 5 23 chain 2487 chr3 198022430 + 180179043 180179803 L1PA3long 6157 - 0 767 44418 12 1 8 747 chain 11977 chr3 198022430 + 180191184 180191337 THE1B-int 1605 - 70 220 152300 18 4 0 112 1 2 18 chain 7218 chr3 198022430 + 180192669 180192746 THE1B-int 1605 - 6 83 175952 77 chain 56096 chr3 198022430 + 180201451 180202311 L1PA5 6144 + 614 1460 8122 133 0 19 186 25 0 133 0 1 83 9 0 291 chain 5858 chr3 198022430 + 180202329 180202391 L1PA3long 6157 - 705 767 186608 62 chain 1809 chr3 198022430 + 180202392 180202945 L1PA3long 6157 - 767 1320 44418 553 chain 324443 chr3 198022430 + 180203647 180208621 L1PA5 6144 + 1460 6141 8122 664 0 3 182 1 0 4 0 1 37 308 0 17 0 1 411 0 1 395 1 0 103 1 0 1096 3 0 1001 0 1 91 1 0 4 0 1 11 0 1 510 1 2 37 0 12 95 chain 264170 chr3 198022430 + 180216056 180219715 L1PA11 4918 - 292 3925 15476 15 47 33 10 3 1 13 1 0 15 13 9 10 8 3 9 4 0 20 1 0 13 2 0 68 2 0 13 2 1 62 4 0 291 8 0 341 1 0 17 0 1 15 1 0 138 4 8 59 0 1 49 25 24 10 1 4 9 2 0 81 0 1 172 0 1 187 5 6 33 5 9 34 0 1 27 4 3 542 41 29 18 8 6 88 0 4 308 10 7 394 0 5 31 3 13 13 6 5 23 0 1 120 0 9 200 chain 44929 chr3 198022430 + 180227492 180228049 MER41A 554 + 0 554 63136 322 0 1 202 4 0 29 chain 4335 chr3 198022430 + 180250057 180250144 MER52C 1267 + 861 920 202778 8 28 0 51 chain 29162 chr3 198022430 + 180253771 180254994 L1MA3 4352 + 3102 4278 45301 90 0 1 37 0 2 5 2 0 144 1 0 39 1 5 89 0 7 10 4 1 238 29 11 11 10 4 129 0 3 153 49 25 7 3 0 57 53 52 14 4 0 24 2 0 18 chain 125568 chr3 198022430 + 180255024 180256904 L1PB1 5432 - 9 1842 29221 9 1 0 10 1 0 8 6 5 21 1 0 24 2 0 5 23 15 18 22 12 16 1 0 8 0 7 28 1 0 12 9 8 49 18 12 12 2 1 9 1 0 20 39 11 202 19 13 82 0 9 88 0 2 77 1 3 18 0 4 335 0 1 307 0 1 51 0 1 75 10 0 21 0 2 79 2 5 137 chain 1097 chr3 198022430 + 180256926 180256972 L1MA3 4352 + 4283 4327 45301 5 1 0 29 1 0 10 chain 41583 chr3 198022430 + 180257884 180258336 L1PA4 6152 - 1729 2181 67181 452 chain 155499 chr3 198022430 + 180258340 180260056 L1PA4 6152 + 4434 6151 23923 96 0 1 1620 chain 89184 chr3 198022430 + 180276582 180277709 L1P2 5180 + 2147 3270 39936 59 0 2 119 1 0 64 0 3 103 12 1 342 0 2 359 8 9 60 chain 254822 chr3 198022430 + 180277721 180280881 L1P2 5180 + 4 3169 15994 146 2 1 96 1 0 211 0 1 49 1 0 7 1 0 132 12 1 139 1 0 6 1 0 624 7 5 7 0 2 251 0 2 135 0 1 505 1 0 121 5 9 32 0 1 37 0 1 254 6 10 243 0 9 127 chain 28755 chr3 198022430 + 180285165 180285468 AluYg6 310 + 0 303 90091 303 chain 42094 chr3 198022430 + 180296001 180296653 MER9a2 513 + 0 513 66504 13 0 1 44 0 4 254 155 11 186 chain 26936 chr3 198022430 + 180308508 180308854 MER1A 529 + 175 523 96499 231 0 1 49 4 5 62 chain 38101 chr3 198022430 + 180336201 180336640 L1PA4 6152 - 0 444 71978 6 0 5 433 chain 72024 chr3 198022430 + 180353592 180354733 L1PREC2 3366 + 1920 3046 47467 306 0 1 239 1 0 102 14 33 22 1 4 70 5 6 8 1 0 41 2 0 54 2 1 43 1 0 3 3 0 14 132 104 35 10 6 5 0 2 27 chain 6148 chr3 198022430 + 180370711 180370844 L1M3 994 + 171 313 183997 29 20 20 29 11 21 25 1 0 18 chain 157053 chr3 198022430 + 180391735 180393483 L1PA5 6144 - 1469 3216 23713 984 1 0 763 chain 62747 chr3 198022430 + 180393483 180394172 L1PA5 6144 + 4683 5373 51559 222 0 1 467 chain 66966 chr3 198022430 + 180394172 180394930 L1PA5 6144 + 5375 6130 49663 294 0 2 219 5 0 240 chain 3929 chr3 198022430 + 180399070 180399142 L1M3e 1964 + 41 111 208428 27 15 13 30 chain 37442 chr3 198022430 + 180421307 180421782 MER9a3 513 + 15 513 72902 91 4 5 145 1 0 9 3 21 24 0 4 121 1 2 76 chain 26149 chr3 198022430 + 180424441 180424751 AluSp 311 + 2 308 99403 296 4 0 10 chain 24887 chr3 198022430 + 180486995 180487347 THE1B 368 - 0 368 105426 75 2 1 120 8 6 13 0 2 5 13 15 72 0 15 44 chain 72158 chr3 198022430 + 180489547 180490525 MER11A 1151 - 0 1151 47401 44 1 2 6 1 0 178 0 1 26 0 81 123 5 6 145 0 1 97 0 1 112 0 2 32 4 0 64 1 0 53 8 0 23 11 110 44 chain 116862 chr3 198022430 + 180493547 180495121 THE1B-int 1605 - 0 1605 32174 181 1 0 87 18 19 29 0 1 638 24 23 83 0 1 8 0 3 24 51 76 415 0 2 15 chain 5305 chr3 198022430 + 180504877 180504944 MLT2A2 560 + 493 560 191973 67 chain 3053 chr3 198022430 + 180509121 180509155 MER105 203 - 41 75 223947 34 chain 181742 chr3 198022430 + 180516705 180519484 L1PB1 5432 + 2822 5423 20813 17 6 8 92 0 17 27 12 32 56 1 5 203 23 24 63 189 3 154 0 2 164 0 5 42 15 3 8 7 0 217 0 1 56 1 0 38 0 5 416 0 6 142 4 0 329 11 12 134 1 2 9 3 0 28 3 2 14 16 10 52 2 1 16 1 0 44 1 0 12 72 55 22 1 0 34 1 0 15 1 0 4 chain 11881 chr3 198022430 + 180517243 180517394 L1PB1 5432 + 3837 3988 151099 5 3 0 120 0 3 23 chain 28882 chr3 198022430 + 180536982 180537392 L1PREC2 3366 + 2409 2817 89534 41 1 0 4 1 2 16 1 2 278 2 0 48 7 6 11 chain 7913 chr3 198022430 + 180569783 180569871 L1PA4 6152 + 6063 6151 171563 88 chain 17478 chr3 198022430 + 180587961 180588366 LTR1C 686 - 101 648 134309 103 25 109 43 80 86 16 0 33 18 31 30 15 0 21 41 1 0 32 chain 20326 chr3 198022430 + 180594573 180594834 L1PB1 5432 + 4785 5060 126159 210 3 2 38 0 15 10 chain 4114 chr3 198022430 + 180594835 180594909 L1PB1 5432 + 5069 5142 205720 69 1 0 4 chain 14233 chr3 198022430 + 180594933 180595219 L1PB1 5432 + 5162 5423 143783 6 2 0 52 2 1 15 1 0 44 1 0 16 66 50 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 38703 chr3 198022430 + 180606870 180607390 LTR10G 522 - 0 522 71146 10 1 0 62 0 2 95 11 10 252 7 0 67 0 9 15 chain 28260 chr3 198022430 + 180608031 180608330 AluYg6 310 + 0 299 92079 299 chain 234513 chr3 198022430 + 180613275 180617618 MER61-int 3695 + 0 3678 17061 20 31 26 170 3 4 19 77 470 98 314 0 198 0 1 53 0 1 128 0 2 60 0 1 14 153 0 93 0 2 61 0 4 71 298 2 122 1 6 14 9 7 24 0 1 43 0 9 367 317 0 33 13 9 185 0 1 60 3 0 178 1 0 51 12 9 148 2 1 92 45 40 93 9 21 145 0 1 49 9 14 29 0 1 343 1 0 84 chain 19328 chr3 198022430 + 180623218 180623454 AluSc 308 - 14 250 129148 236 chain 21386 chr3 198022430 + 180625283 180625548 AluSp 311 + 27 290 122564 258 2 0 5 chain 23647 chr3 198022430 + 180647770 180648065 AluSc5 308 + 0 295 112324 4 1 0 66 0 1 224 chain 24773 chr3 198022430 + 180656325 180656624 AluSp 311 - 1 300 106040 299 chain 23857 chr3 198022430 + 180682809 180683092 AluSp 311 - 17 301 111142 246 0 1 37 chain 4311 chr3 198022430 + 180683427 180683479 MLT1D 503 - 345 397 203079 52 chain 529105 chr3 198022430 + 180715974 180722680 L1PA7 6471 - 7 6396 4286 150 2 0 614 0 2 1139 322 0 549 0 1 4 10 13 162 0 1 281 4 1 7 0 3 172 0 1 123 0 3 139 0 4 92 1 14 348 24 0 248 3 4 1383 0 1 158 3 4 322 2 1 5 1 0 110 0 2 328 chain 3180 chr3 198022430 + 180729099 180729134 MSTC 436 + 0 35 221325 35 chain 55171 chr3 198022430 + 180729184 180730087 L1PB1 5432 - 10 886 55603 18 1 0 34 1 0 24 2 0 14 1 0 5 3 1 15 32 20 11 1 0 44 1 0 17 1 0 41 28 22 12 1 0 6 1 0 24 7 0 9 1 2 128 0 1 253 8 7 15 3 14 64 18 16 59 chain 4600 chr3 198022430 + 180746963 180747017 L1MC 810 - 274 328 199626 54 chain 3534 chr3 198022430 + 180747654 180747694 L1MEf 1413 - 1193 1233 214804 40 chain 497299 chr3 198022430 + 180758685 180764692 L1PA5 6144 - 0 6144 6996 516 0 145 189 1 0 660 0 2 566 0 1 402 5 20 140 6 7 867 0 16 266 35 9 24 2 1 62 0 2 121 0 1 488 1 2 265 5 6 197 13 4 211 25 0 274 0 1 125 2 1 404 0 14 135 chain 57881 chr3 198022430 + 180769183 180769923 MER4E 760 - 8 760 54045 212 1 2 92 1 0 23 0 1 61 2 0 17 2 1 72 1 13 50 0 1 22 0 1 20 1 0 137 4 5 22 chain 487385 chr3 198022430 + 180787176 180793472 L1PA8A 6298 - 7 6254 7462 107 1 0 33 1 9 572 0 2 75 1 4 484 0 2 608 0 1 182 4 5 165 30 9 8 1 0 106 10 11 36 0 1 21 1 0 339 0 1 24 6 5 82 1 0 33 2 0 863 0 2 366 0 2 156 1 0 340 1 0 75 14 13 254 5 6 140 1 0 13 9 8 31 0 4 156 0 1 130 5 1 221 11 12 37 0 1 21 1 0 77 18 15 14 2 0 78 40 48 15 2 0 7 5 0 15 28 24 12 1 0 4 3 1 16 2 0 11 1 0 5 5 4 9 2 1 9 1 0 18 20 11 18 6 3 21 14 4 9 3 0 6 1 0 14 chain 12301 chr3 198022430 + 180797117 180797309 LTR7B 505 + 262 461 151009 28 1 0 22 33 41 108 chain 3450 chr3 198022430 + 180798600 180798639 L1MB1 2102 + 1801 1840 216201 39 chain 12041 chr3 198022430 + 180799321 180799509 LTR7B 505 + 262 457 152024 28 1 0 22 33 41 104 chain 110367 chr3 198022430 + 180808529 180810195 L1PA15 4387 - 21 1631 34101 10 1 0 27 26 19 40 29 26 24 5 4 11 5 1 16 8 7 51 1 0 25 2 1 171 1 0 41 3 1 17 1 0 4 0 1 34 4 0 15 0 3 5 11 9 38 0 1 26 40 4 310 0 1 4 0 1 250 4 3 128 5 7 58 0 1 215 chain 22871 chr3 198022430 + 180832290 180832591 AluY 311 + 0 298 116222 19 11 8 271 chain 34297 chr3 198022430 + 180837139 180837518 L1PA3long 6157 - 600 979 77218 379 chain 53971 chr3 198022430 + 180837520 180838122 L1PA3long 6157 + 5553 6156 56386 435 0 1 167 chain 2829 chr3 198022430 + 180867218 180867254 L1MC2 1988 - 198 235 228227 28 0 1 8 chain 4034 chr3 198022430 + 180867258 180867310 L1MC2 1988 - 198 251 203653 28 0 1 24 chain 40471 chr3 198022430 + 180867310 180868989 L1PB1 5432 + 4746 5422 68635 56 4 5 69 0 4 31 1 0 192 982 0 13 5 10 12 1 0 6 1 0 12 2 0 3 2 0 9 3 1 51 7 6 10 1 0 43 2 1 10 28 18 15 2 0 9 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 107350 chr3 198022430 + 180869118 180870288 L1PA2 6032 + 4859 6029 34878 1170 chain 118367 chr3 198022430 + 180875581 180876887 L1PA4 6152 - 9 1315 31661 759 1 0 64 0 1 482 chain 75620 chr3 198022430 + 180876887 180877721 L1PA4 6152 + 3998 4832 45553 834 chain 25193 chr3 198022430 + 180878142 180878431 L1PA5 6144 - 1 290 103780 289 chain 90690 chr3 198022430 + 180900003 180901330 LTR12C 1709 - 6 1709 39391 78 1 0 111 0 1 285 11 4 20 0 1 17 17 358 228 12 0 219 0 43 42 43 44 167 45 54 31 chain 3150 chr3 198022430 + 180949285 180949325 MER53 195 + 26 66 221921 40 chain 10178 chr3 198022430 + 180949524 180949631 U6 107 + 0 107 159721 107 chain 28294 chr3 198022430 + 180961902 180962218 AluY 311 + 0 311 91966 126 5 0 185 chain 12798 chr3 198022430 + 180962690 180962845 L1PA8A 6298 + 5880 6036 149061 127 0 1 28 chain 8030 chr3 198022430 + 180992231 180992360 MER5A1 166 + 39 165 170873 6 5 0 70 8 10 40 chain 18852 chr3 198022430 + 180994551 180994781 L1PA7 6471 + 6236 6469 130508 185 0 4 31 1 0 13 chain 12333 chr3 198022430 + 181003585 181004352 MLT1B 390 + 21 385 150881 5 0 2 40 33 35 15 535 132 98 3 0 14 2 1 22 chain 144819 chr3 198022430 + 181023966 181025694 L1PA7 6471 + 4746 6470 25352 209 1 0 665 0 4 86 5 4 34 1 0 96 6 1 625 chain 4610 chr3 198022430 + 181027464 181027629 MER5A 189 + 23 189 199509 42 12 13 16 33 35 12 34 32 16 chain 502390 chr3 198022430 + 181037047 181043220 L1PA7 6471 - 2 6209 6704 146 14 15 68 0 3 10 8 5 507 0 3 73 1 0 18 1 0 515 1 0 4 0 1 41 0 5 76 0 1 29 2 0 124 5 9 209 0 1 45 1 2 618 10 11 101 7 3 273 0 4 470 0 1 406 1 0 39 0 1 72 0 13 775 0 1 107 1 0 31 0 1 473 1 2 72 0 1 4 1 0 233 1 2 220 1 0 179 1 3 37 1 2 102 14 16 24 chain 6540 chr3 198022430 + 181054740 181054933 L1MC1 2226 + 1866 2047 180915 21 7 1 23 87 81 55 chain 22738 chr3 198022430 + 181067711 181068002 AluSg7 307 + 0 307 116881 52 0 16 53 1 0 10 0 1 175 chain 5241 chr3 198022430 + 181125119 181125182 L1P 111 - 15 78 192605 63 chain 38153 chr3 198022430 + 181125201 181125650 L1PA7 6471 + 6017 6467 71906 290 5 6 154 chain 20969 chr3 198022430 + 181147811 181148053 L1PA5 6144 + 5880 6124 124036 52 0 2 190 chain 60954 chr3 198022430 + 181158067 181158817 L1PA8 5853 + 5110 5853 52359 454 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 2 1 92 chain 307182 chr3 198022430 + 181189489 181194354 L1PA11 4918 - 832 4905 13124 44 21 0 840 18 16 36 0 1 276 757 2 6 0 2 538 0 3 6 20 31 26 0 4 14 1 0 1 3 0 7 0 1 24 1 0 298 5 1 95 4 1 228 0 1 229 1 0 200 4 0 266 1 2 91 0 1 7 2 1 73 0 1 40 18 9 38 6 7 89 15 9 86 1 5 211 2 1 5 2 0 31 2 1 53 2 0 13 1 0 36 4 1 36 6 4 25 chain 57361 chr3 198022430 + 181190741 181191475 L1PA8 5853 - 0 728 54309 93 1 0 19 2 1 39 1 2 11 1 0 9 1 0 69 7 5 41 1 0 173 0 1 104 2 1 160 chain 65242 chr3 198022430 + 181195982 181196836 L1PA7 6471 - 7 863 50283 5 2 0 111 15 21 640 13 11 30 6 7 18 1 0 13 chain 317727 chr3 198022430 + 181196836 181200677 L1PA7 6471 + 1717 5588 12685 118 1 2 118 0 1 393 0 1 430 0 8 687 0 2 20 4 0 146 13 15 156 3 4 11 2 0 489 4 7 33 0 1 344 0 14 126 5 8 104 1 0 633 chain 29402 chr3 198022430 + 181209610 181209920 AluYb8 318 + 0 310 87058 310 chain 127481 chr3 198022430 + 181227824 181229428 THE1B-int 1605 + 0 1605 28697 24 4 3 181 6 0 224 0 25 645 1 0 289 17 0 40 0 1 173 chain 18537 chr3 198022430 + 181229428 181229761 THE1B 368 + 0 355 131397 32 0 3 12 26 35 36 2 3 43 1 0 34 42 52 105 chain 77950 chr3 198022430 + 181245407 181246393 L1PB1 5432 - 530 1518 44547 105 0 1 168 3 0 27 3 2 410 0 3 6 13 15 251 chain 26760 chr3 198022430 + 181246393 181246851 L1PB1 5432 + 4892 5324 97123 211 1 2 8 4 1 24 2 1 7 1 0 10 7 3 8 2 0 53 6 5 11 1 0 43 2 1 16 3 0 6 16 6 16 chain 6087 chr3 198022430 + 181258180 181258255 MIR 256 - 108 183 184518 75 chain 3054 chr3 198022430 + 181277952 181277998 MIRb 242 - 29 74 223929 17 2 1 27 chain 60598 chr3 198022430 + 181297561 181298237 L1PA4 6152 + 5465 6152 52521 432 0 7 130 0 3 106 0 1 8 chain 489353 chr3 198022430 + 181303224 181309340 L1PA5 6144 - 15 6144 7394 97 2 1 159 0 1 32 1 18 10 0 1 1333 0 1 281 0 2 10 1 0 9 0 13 81 10 12 792 14 11 89 1 0 1216 21 21 65 0 1 61 0 1 435 4 0 207 13 4 206 30 5 372 1 0 48 0 2 5 11 12 215 0 1 4 21 19 23 1 3 39 1 0 69 15 29 24 0 2 87 chain 194263 chr3 198022430 + 181315344 181317506 L1PA5 6144 - 4 2169 19649 156 0 1 1896 0 2 110 chain 4246 chr3 198022430 + 181346321 181346381 MIRc 230 - 104 165 203918 16 4 5 40 chain 3261 chr3 198022430 + 181355802 181355839 MER58A 224 - 9 46 219775 37 chain 21417 chr3 198022430 + 181367372 181367642 AluSp 311 - 38 310 122456 97 0 3 52 1 0 120 chain 36267 chr3 198022430 + 181386317 181386789 L1PA6 6164 + 5695 6160 74537 10 0 2 278 0 2 93 27 16 64 chain 28691 chr3 198022430 + 181400113 181400422 AluYb8 318 - 12 318 90363 5 2 0 175 1 0 126 chain 22453 chr3 198022430 + 181497593 181497839 L1PA4 6152 + 5906 6152 118228 246 chain 8639 chr3 198022430 + 181501442 181501550 MER30B 195 - 4 112 167548 108 chain 22614 chr3 198022430 + 181507509 181507773 AluY 311 + 40 306 117509 91 0 2 173 chain 31717 chr3 198022430 + 181518259 181518672 L1PREC2 3366 + 444 858 81305 24 1 0 356 0 1 15 1 2 16 chain 10782 chr3 198022430 + 181540658 181540778 5S 121 - 1 121 157064 120 chain 7186 chr3 198022430 + 181558669 181558758 L1MC1 2226 + 1276 1365 176169 89 chain 4176 chr3 198022430 + 181576674 181576742 MER44A 345 - 175 240 204902 12 0 2 38 1 0 6 4 0 7 chain 26195 chr3 198022430 + 181585767 181586066 AluY 311 + 0 298 99220 9 1 0 108 0 1 24 1 0 156 chain 24808 chr3 198022430 + 181609010 181609309 AluSp 311 - 0 300 105847 199 1 2 99 chain 25532 chr3 198022430 + 181609335 181609645 AluSp 311 - 5 311 102088 8 5 0 194 0 1 103 chain 22713 chr3 198022430 + 181627432 181627706 AluSp 311 - 34 307 117019 144 2 1 128 chain 119084 chr3 198022430 + 181643101 181644451 SVA_B 1603 - 6 1559 31376 210 1 0 228 0 3 140 0 82 66 0 40 82 0 40 214 0 39 409 chain 37093 chr3 198022430 + 181646061 181646742 L1PREC2 3366 - 360 991 73393 33 38 22 29 70 55 14 7 3 44 8 7 44 11 9 140 11 0 150 10 9 72 chain 7543 chr3 198022430 + 181656105 181656192 L1PA16 3655 + 3290 3377 173917 87 chain 3895 chr3 198022430 + 181662904 181662948 MSTB 430 - 386 430 208919 44 chain 12139 chr3 198022430 + 181688652 181688783 L1PA2 6032 + 5901 6032 151657 131 chain 6796 chr3 198022430 + 181689075 181689163 L1PA8 5853 - 0 112 178982 48 0 25 20 1 0 19 chain 32225 chr3 198022430 + 181712205 181712733 L1PB1 5432 - 131 768 80477 20 1 0 44 1 0 16 2 1 53 2 0 9 64 55 189 29 152 98 chain 15309 chr3 198022430 + 181712746 181712951 L1PB1 5432 + 4472 4681 140467 13 13 14 130 0 3 49 chain 28968 chr3 198022430 + 181715672 181715976 AluYg6 310 - 6 310 89145 304 chain 181469 chr3 198022430 + 181760333 181762462 L1PA7 6471 - 2 2128 20850 769 0 2 77 1 0 128 3 1 543 1 0 486 1 0 120 chain 87079 chr3 198022430 + 181765345 181766637 L1PB1 5432 - 12 1261 40746 16 1 0 13 1 0 21 1 0 23 5 3 12 1 0 9 13 19 8 18 0 15 1 0 27 0 1 17 18 16 42 27 21 13 1 0 10 1 0 13 45 27 466 1 4 453 chain 3726 chr3 198022430 + 181772809 181772861 L1MC3 1789 - 471 520 211526 7 3 0 42 chain 16042 chr3 198022430 + 181794142 181794342 AluY 311 + 105 306 138237 22 1 2 177 chain 15044 chr3 198022430 + 181805994 181806302 L1MA3 4352 + 3999 4282 141195 32 0 2 29 81 61 112 4 0 25 3 0 22 chain 67933 chr3 198022430 + 181813073 181813979 L1PA8 5853 - 0 906 49269 37 0 1 55 1 0 8 16 15 48 13 11 70 2 0 44 1 0 275 0 1 50 0 1 148 1 2 75 4 7 58 chain 2883 chr3 198022430 + 181817954 181817984 MER91C 135 - 18 48 227326 30 chain 5585 chr3 198022430 + 181830435 181830744 MLT1B 390 + 22 346 189225 18 225 240 66 chain 15353 chr3 198022430 + 181849872 181850228 L1PB1 5432 - 5 325 140333 4 1 0 4 1 0 15 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 40 27 44 1 0 16 2 1 23 8 0 29 18 12 12 2 1 7 1 0 12 0 5 12 chain 23852 chr3 198022430 + 181856934 181857220 AluSp 311 - 25 311 111173 286 chain 534539 chr3 198022430 + 181868217 181874913 L1PA7 6471 - 9 6430 3646 134 0 8 7 5 0 199 9 7 159 3 0 741 282 2 6 0 4 246 1 0 268 0 1 361 0 2 129 0 1 403 0 1 112 0 5 31 0 1 131 1 0 53 0 1 817 11 1 968 0 1 861 0 1 394 1 2 363 chain 22903 chr3 198022430 + 181869474 181869738 L1PA7 6471 - 2708 2972 115670 264 chain 30964 chr3 198022430 + 181903932 181904302 L1PA7 6471 - 4 380 82574 12 0 6 358 chain 26495 chr3 198022430 + 181904302 181904608 L1PA7 6471 + 5666 5973 98063 37 0 1 269 chain 147503 chr3 198022430 + 181941651 181943554 L1PA13 3608 - 120 2022 24960 19 2 1 20 9 5 47 2 0 5 1 0 56 1 0 48 0 1 13 2 0 113 1 0 30 1 0 210 0 1 180 3 0 68 0 6 712 0 5 129 1 2 19 0 1 211 chain 29790 chr3 198022430 + 181948058 181948376 AluYb9 318 - 0 318 85508 318 chain 5360 chr3 198022430 + 181975531 181975696 MER121 330 + 30 185 191438 17 1 0 10 77 68 60 chain 15922 chr3 198022430 + 182022548 182022775 L1PA8 5853 + 5630 5853 138601 48 14 12 53 2 1 16 1 0 93 chain 223611 chr3 198022430 + 182029524 182032791 L1PA10 4194 - 51 3942 17677 27 8 5 102 1 702 352 7 1 197 14 14 68 40 12 24 4 0 27 3 1 9 0 3 5 21 18 134 1 0 216 0 4 58 1 0 33 2 0 198 2 1 72 1 2 5 1 0 32 8 1 198 0 2 84 2 1 127 1 2 288 6 7 207 1 0 358 6 7 49 20 18 64 6 5 8 7 0 15 5 0 10 87 76 8 1 0 14 3 1 19 chain 200646 chr3 198022430 + 182034992 182038079 L1PA13 3608 - 62 3092 19164 10 4 1 14 6 0 3 1 0 10 28 20 19 4 3 18 2 0 5 2 0 47 3 1 8 1 0 18 41 40 56 2 0 113 1 0 30 32 0 24 4 5 639 14 13 20 0 3 10 1 4 35 0 1 4 1 0 126 8 0 67 2 3 213 0 8 13 1 0 7 3 1 38 1 0 78 0 10 10 15 6 152 0 1 15 1 0 6 1 2 164 1 0 80 0 1 40 1 5 105 3 4 121 8 10 39 1 0 269 1 0 40 35 33 68 8 6 44 5 0 7 16 21 22 11 10 11 chain 24465 chr3 198022430 + 182043951 182044260 AluY 311 + 1 304 107731 131 0 1 48 10 0 5 0 3 115 chain 137666 chr3 198022430 + 182062971 182064551 L1PA5 6144 + 4549 6132 26529 332 0 1 745 0 1 324 0 1 179 chain 67488 chr3 198022430 + 182066447 182067649 L1PA16 3655 - 36 1227 49457 16 94 66 108 33 32 106 2 0 6 1 3 63 57 56 179 0 2 60 1 0 24 1 0 93 2 11 62 5 6 5 0 1 28 64 72 192 chain 22194 chr3 198022430 + 182077880 182078139 AluY 311 + 40 296 119377 91 3 0 165 chain 27364 chr3 198022430 + 182096367 182096662 AluYa5 310 - 0 310 95068 255 0 15 40 chain 21538 chr3 198022430 + 182116459 182116704 L1PA4 6152 + 5909 6152 122007 225 1 0 13 1 0 5 chain 3352 chr3 198022430 + 182137116 182137154 L1P1 4361 - 313 351 216368 38 chain 85065 chr3 198022430 + 182137154 182138161 L1PA5 6144 + 5138 6143 41489 741 1 0 158 16 15 91 chain 554255 chr3 198022430 + 182143880 182149898 L1PA2 6032 + 2 6029 916 712 1 2 602 1 0 946 0 4 2914 0 4 832 0 1 10 chain 30043 chr3 198022430 + 182175964 182176282 AluYb8 318 - 0 318 84667 318 chain 68743 chr3 198022430 + 182180883 182181802 THE1B-int 1605 + 648 1605 48928 353 5 19 53 1 2 12 0 20 48 23 31 21 0 1 177 14 8 212 chain 99012 chr3 198022430 + 182185374 182186941 L1PB1 5432 - 10 1429 37025 18 1 0 13 1 0 21 1 0 24 2 0 14 9 6 17 16 7 6 2 0 15 1 0 44 7 6 10 2 1 24 63 6 22 29 0 9 2 0 3 2 0 10 1 0 8 1 0 24 15 0 15 23 4 296 0 1 172 30 28 282 0 1 312 chain 29901 chr3 198022430 + 182199228 182199543 AluYb9 318 - 3 318 85094 315 chain 37506 chr3 198022430 + 182241076 182241549 L1PA8 5853 - 0 466 72805 93 1 0 19 2 1 47 1 0 14 2 1 69 2 0 47 1 0 175 chain 40382 chr3 198022430 + 182248649 182249245 L1PB2 3958 + 3249 3836 68763 21 0 5 32 2 0 54 1 0 16 9 6 56 2 0 91 1 0 87 1 0 64 2 1 71 2 0 15 14 13 55 chain 38764 chr3 198022430 + 182270549 182271031 L1PA10 4194 - 44 522 71062 34 3 0 34 1 0 21 0 1 156 1 0 232 chain 6168 chr3 198022430 + 182306194 182306276 MLT1D 503 - 19 101 183816 82 chain 89215 chr3 198022430 + 182307246 182308236 L1PA3long 6157 + 5175 6157 39924 132 1 0 696 7 0 154 chain 20570 chr3 198022430 + 182337493 182337729 L1PA5 6144 + 5903 6139 125394 236 chain 14369 chr3 198022430 + 182346300 182346510 L1MA1 4479 - 317 522 143309 11 1 0 9 1 0 37 2 0 27 7 6 73 1 0 4 0 1 37 chain 34834 chr3 198022430 + 182372920 182373574 L1PA7 6471 - 5 438 76431 14 1 0 78 0 4 39 3 4 183 225 0 111 chain 17125 chr3 198022430 + 182373242 182373463 AluYk4 311 - 6 226 135245 124 8 7 89 chain 117718 chr3 198022430 + 182419302 182420961 L1PB1 5432 - 5 1640 31888 5 2 0 18 1 0 9 0 3 22 1 0 24 2 0 14 1 0 4 3 1 16 9 0 15 4 0 14 2 1 41 22 20 53 2 0 9 6 2 8 2 1 9 1 0 24 1 0 6 8 5 137 0 4 119 32 33 36 1 0 67 0 2 66 12 13 76 1 0 96 0 3 451 1 2 206 chain 16265 chr3 198022430 + 182429504 182429759 MER1B 344 + 89 344 137563 127 4 0 19 15 15 18 16 20 56 chain 69511 chr3 198022430 + 182430141 182431677 L1PA16 3655 + 2371 3590 48605 78 349 12 10 0 9 33 13 18 5 4 0 22 11 15 86 41 47 179 0 4 14 0 3 11 1 0 40 10 13 21 7 6 21 0 2 62 2 1 118 1 0 26 7 0 45 2 1 18 2 0 36 8 10 78 28 29 37 15 17 80 3 0 12 chain 13801 chr3 198022430 + 182448780 182448952 L1PA3long 6157 + 5989 6157 145266 27 0 1 125 6 0 7 0 1 7 chain 21729 chr3 198022430 + 182457901 182458159 AluSc 308 + 5 263 121281 258 chain 26669 chr3 198022430 + 182460526 182460946 LTR7B 505 - 10 505 97427 41 14 13 47 0 1 4 0 1 26 1 0 43 0 1 8 0 88 27 44 20 60 0 10 105 chain 26176 chr3 198022430 + 182480116 182480434 AluY 311 + 0 311 99293 113 14 5 5 0 3 162 1 0 23 chain 9205 chr3 198022430 + 182490207 182490324 L1PA16 3655 - 77 194 164533 117 chain 5629 chr3 198022430 + 182523592 182523680 L1MB7 1623 - 595 684 188767 36 1 0 14 1 3 36 chain 144166 chr3 198022430 + 182539903 182541561 L1PA5 6144 - 1 1658 25447 8 6 0 138 0 1 694 5 9 807 chain 6845 chr3 198022430 + 182585662 182585770 MER58C 217 + 81 205 178628 21 2 0 5 7 25 73 chain 11800 chr3 198022430 + 182608704 182608833 L1PA5 6144 + 6012 6141 153045 129 chain 56919 chr3 198022430 + 182611032 182612000 L1PB1 5432 - 33 988 54581 7 1 0 22 1 0 19 0 5 11 12 9 18 43 31 40 1 0 16 2 1 52 2 0 7 7 3 12 1 0 8 1 0 24 3 0 6 6 5 138 5 6 151 15 18 54 3 7 24 5 7 68 3 4 93 1 2 51 0 1 35 chain 31915 chr3 198022430 + 182613377 182613817 LTR46 455 - 0 455 80988 37 4 0 29 0 2 64 2 1 119 17 15 50 0 20 118 chain 5309 chr3 198022430 + 182645510 182645627 L1MB7 1623 + 920 1036 191919 44 40 39 33 chain 5562 chr3 198022430 + 182648788 182648863 L1MB7 1623 + 1055 1131 189456 11 0 1 9 1 0 29 0 1 25 chain 10490 chr3 198022430 + 182655687 182655858 L1MB7 1623 - 437 613 158286 123 33 38 15 chain 24158 chr3 198022430 + 182690546 182690839 AluSp 311 + 0 291 109440 48 2 0 243 chain 226314 chr3 198022430 + 182712452 182717020 L1PA13 3608 - 120 3522 17516 22 1 0 17 2 0 5 5 3 45 2 0 5 1 0 29 178 5 21 1 0 63 2 0 39 0 4 71 1 0 25 2 0 83 0 1 45 4 0 186 0 5 128 0 1 115 7 6 217 317 7 86 0 1 95 7 9 137 895 263 226 26 25 45 1 2 56 2 3 63 0 1 47 0 1 173 0 1 113 2 3 23 0 1 183 0 1 20 1 0 115 12 0 16 2 0 96 1 0 19 2 0 13 12 10 12 1 0 18 6 2 15 4 2 16 1 0 12 2 1 123 1 0 4 1 0 52 1 0 18 28 17 24 3 0 12 2 1 26 3 0 25 6 4 19 1 0 4 chain 9713 chr3 198022430 + 182724172 182724315 MER41B 635 - 7 155 162021 62 12 17 69 chain 24886 chr3 198022430 + 182725158 182725455 AluSp 311 + 0 296 105432 37 1 0 259 chain 4437 chr3 198022430 + 182727452 182727503 Tigger1 2417 - 1761 1812 201501 51 chain 23033 chr3 198022430 + 182750390 182750680 AluY 311 + 10 301 115478 121 1 2 168 chain 22153 chr3 198022430 + 182753618 182753872 L1PA5 6144 - 0 256 119579 11 1 3 242 chain 30193 chr3 198022430 + 182778366 182778712 L1PA5 6144 - 2 347 84217 248 4 3 94 chain 11082 chr3 198022430 + 182781372 182781504 MER41A 554 + 409 542 155883 21 0 1 111 chain 161157 chr3 198022430 + 182783373 182785911 MER41-int 2638 + 398 2638 23170 55 15 13 130 0 3 81 1 0 47 0 2 79 0 14 153 10 8 112 0 3 21 309 0 91 0 1 5 3 0 104 5 3 80 2 0 96 0 1 167 2 1 176 13 7 31 0 2 208 11 13 286 25 28 87 5 3 46 0 1 82 chain 37047 chr3 198022430 + 182785918 182786386 MER41A 554 + 0 466 73463 30 1 0 56 6 3 292 0 1 48 0 1 35 chain 28114 chr3 198022430 + 182796540 182796911 THE1B 368 - 0 368 92593 191 6 5 159 2 0 13 chain 122188 chr3 198022430 + 182796924 182798477 THE1B-int 1605 - 13 1603 30312 217 0 2 441 0 1 220 3 10 27 1 0 218 1 26 136 6 8 255 0 1 28 chain 29072 chr3 198022430 + 182799376 182799943 LTR18B 584 + 0 564 88674 70 25 26 34 1 11 60 5 0 8 0 2 17 34 40 118 94 77 5 1 0 19 0 1 76 chain 2806 chr3 198022430 + 182802022 182802055 MER5A1 166 - 131 165 228666 5 0 1 28 chain 23558 chr3 198022430 + 182805381 182805677 AluY 311 + 0 302 112806 36 0 7 90 2 0 72 1 2 95 chain 8709 chr3 198022430 + 182814958 182815050 AluYb8 318 + 212 304 167150 92 chain 118778 chr3 198022430 + 182818502 182819893 LTR12C 1709 + 0 1708 31502 309 0 1 4 1 0 259 3 0 219 1 319 6 2 0 107 0 4 480 chain 102879 chr3 198022430 + 182820771 182822098 LTR12C 1709 - 0 1709 36027 53 6 137 43 1 0 4 66 34 25 0 4 127 1 0 54 0 4 86 22 0 20 4 2 4 1 0 108 0 301 238 0 1 464 chain 18468 chr3 198022430 + 182823891 182824151 MER65A 464 + 149 458 131590 166 1 0 14 6 56 73 chain 23292 chr3 198022430 + 182831087 182831363 L1PA5 6144 + 5865 6144 114244 37 0 1 46 0 2 193 chain 35136 chr3 198022430 + 182831730 182832238 LTR6B 557 + 0 557 76013 22 14 42 8 0 15 272 0 1 46 2 0 12 39 43 32 0 1 6 0 1 33 0 1 22 chain 14990 chr3 198022430 + 182867419 182867651 L1MA3 4352 + 4120 4345 141354 80 1 3 55 2 0 24 1 0 6 1 0 29 1 0 11 6 2 15 chain 113160 chr3 198022430 + 182885849 182887261 THE1A-int 1579 - 16 1579 33331 122 0 6 150 2 1 4 0 1 323 0 2 24 1 138 16 17 18 167 1 0 7 0 1 239 0 2 285 0 1 21 0 2 33 chain 29819 chr3 198022430 + 182887261 182887615 THE1A 353 - 0 353 85378 243 1 0 110 chain 92080 chr3 198022430 + 182887768 182888795 LTR5A 1029 + 0 1029 38945 116 0 3 31 1 0 879 chain 72640 chr3 198022430 + 182891938 182892723 L1PA3long 6157 - 1 786 47199 785 chain 6260 chr3 198022430 + 182892726 182892795 U3 216 - 147 216 183085 69 chain 4036 chr3 198022430 + 182896801 182896847 MER20 218 + 96 142 206831 46 chain 21952 chr3 198022430 + 182909940 182910217 AluSg7 307 - 21 298 120418 57 0 1 96 0 1 67 2 0 55 chain 199744 chr3 198022430 + 182917412 182919690 L1PA5 6144 - 0 2278 19228 134 4 0 167 0 1 544 1 4 519 1 0 153 1 0 423 3 5 328 chain 22046 chr3 198022430 + 182943988 182944245 AluSc5 308 + 38 295 120040 257 chain 324035 chr3 198022430 + 182952484 182955929 L1HS 6032 - 0 3445 12434 3445 chain 47066 chr3 198022430 + 182961075 182961654 HERVL-int 5654 - 5025 5604 61149 579 chain 11374 chr3 198022430 + 182965412 182965695 MER2 342 + 29 335 154800 16 77 99 115 40 41 35 chain 4731 chr3 198022430 + 182976114 182976166 5S 121 - 31 83 198151 52 chain 16175 chr3 198022430 + 182991448 182991660 Tigger3c 601 + 293 506 137828 179 1 2 32 chain 39274 chr3 198022430 + 183042627 183043065 L1PA4 6152 + 5709 6151 70362 194 0 4 244 chain 344592 chr3 198022430 + 183062244 183066355 L1PA7 6471 + 2335 6461 11771 296 0 2 9 1 0 42 0 1 204 6 13 1238 1 8 109 0 2 108 0 1 300 0 4 307 1 0 32 5 9 179 1 0 198 0 1 95 0 1 120 0 3 514 1 0 167 31 17 146 chain 4018 chr3 198022430 + 183070709 183070757 MER4D1 891 + 587 635 207105 48 chain 26999 chr3 198022430 + 183094826 183095184 L1PA8 5853 - 0 352 96286 93 1 0 16 1 0 42 3 10 7 9 0 77 2 0 46 1 0 52 0 1 8 chain 24463 chr3 198022430 + 183131179 183131551 LTR21B 408 + 0 379 107744 65 4 0 4 1 0 33 1 0 89 1 2 46 2 18 68 26 22 32 chain 32915 chr3 198022430 + 183137679 183138064 THE1D-int 1627 - 1242 1627 79346 348 1 0 19 1 0 5 0 2 11 chain 46496 chr3 198022430 + 183152033 183152587 LTR6B 557 - 0 556 61601 104 6 9 48 1 0 395 chain 6181 chr3 198022430 + 183159337 183159410 MSTA 426 - 220 293 183726 73 chain 6346 chr3 198022430 + 183159480 183159563 LTR54 533 - 1 83 182414 48 1 0 34 chain 4682 chr3 198022430 + 183161990 183162081 Tigger1 2417 + 2308 2416 198742 44 22 39 25 chain 25567 chr3 198022430 + 183164144 183164444 AluSp 311 - 14 311 101887 11 6 0 94 0 3 189 chain 3474 chr3 198022430 + 183197295 183197370 MLT1F1 559 - 56 145 215768 30 26 40 19 chain 87143 chr3 198022430 + 183228711 183229715 LTR5B 1012 - 0 1012 40714 8 0 2 874 0 2 114 0 4 8 chain 25946 chr3 198022430 + 183231507 183231857 L1PA8 5853 - 0 346 100226 67 0 3 23 1 0 19 2 1 39 0 1 4 1 0 5 1 0 12 2 1 70 3 1 43 1 0 57 chain 28995 chr3 198022430 + 183266573 183266949 L1PA8 5853 + 5484 5853 89005 80 1 0 44 2 0 67 6 5 10 1 0 49 3 2 19 1 0 93 chain 25387 chr3 198022430 + 183277016 183277313 AluY 311 + 5 302 102750 4 1 0 123 0 1 169 chain 32988 chr3 198022430 + 183287573 183288097 L1MA1 4479 - 289 782 79236 18 7 0 13 11 8 9 1 0 35 2 0 29 1 0 123 12 8 88 1 0 5 2 0 5 14 9 12 4 3 70 1 0 16 2 0 24 1 0 18 chain 19046 chr3 198022430 + 183296852 183297083 AluSc 308 - 23 254 129985 231 chain 5484 chr3 198022430 + 183300746 183300816 MER5A1 166 + 38 120 190183 14 0 12 56 chain 25473 chr3 198022430 + 183318698 183318988 AluSp 311 - 12 300 102342 167 2 0 121 chain 166823 chr3 198022430 + 183325154 183327573 SVA_E 1901 + 0 1899 22416 153 1 0 492 0 40 132 1 0 19 3 0 87 550 0 4 1 0 9 0 49 110 1 0 10 52 0 794 chain 27047 chr3 198022430 + 183326143 183326529 SVA_F 1814 + 893 1219 96120 55 77 14 119 0 1 94 0 1 37 0 1 4 chain 2542 chr3 198022430 + 183326210 183326275 SVA_F 1814 + 664 769 176096 41 6 46 18 chain 3869 chr3 198022430 + 183326727 183326779 SVA_E 1901 + 930 967 149945 26 15 0 11 chain 70044 chr3 198022430 + 183327780 183328573 L1PA4 6152 - 1 796 48373 35 2 4 756 chain 15296 chr3 198022430 + 183338408 183338628 L1PA8 5853 + 5637 5853 140501 45 9 7 51 2 1 16 5 4 92 chain 7233 chr3 198022430 + 183384006 183384461 Tigger4a 237 - 18 161 175875 31 316 0 40 4 8 16 2 9 8 7 0 31 chain 10824 chr3 198022430 + 183385233 183385474 MER1B 344 + 109 344 156895 22 3 5 20 15 27 5 2 0 10 6 7 60 39 20 59 chain 23345 chr3 198022430 + 183410519 183410816 AluSc 308 + 0 285 113954 53 7 1 71 6 1 131 1 0 28 chain 68062 chr3 198022430 + 183456191 183456935 L1PA2 6032 - 0 746 49219 14 0 2 730 chain 117170 chr3 198022430 + 183456935 183458206 L1PA2 6032 + 4054 5333 32068 175 0 4 927 0 4 169 chain 54234 chr3 198022430 + 183458206 183459284 Tigger1 2417 + 584 1360 56202 170 1 3 304 11 18 5 0 1 14 344 32 229 chain 22497 chr3 198022430 + 183486498 183486766 AluSp 311 + 20 288 118040 268 chain 18319 chr3 198022430 + 183492040 183492290 MER1B 344 + 93 344 132027 174 18 19 58 chain 23548 chr3 198022430 + 183497486 183497775 AluSc 308 - 16 300 112860 6 5 0 278 chain 26116 chr3 198022430 + 183501983 183502427 L1PA16 3655 - 456 943 99550 71 26 70 15 0 5 54 0 2 32 1 0 28 1 0 14 1 0 4 8 0 4 6 0 9 7 11 79 1 3 61 7 10 15 chain 25334 chr3 198022430 + 183502992 183503297 AluSc 308 + 0 300 103048 17 1 0 54 2 0 89 1 0 97 1 0 43 chain 26708 chr3 198022430 + 183509929 183510286 L1PA8 5853 - 0 347 97290 93 1 0 19 2 1 52 2 1 7 1 0 72 2 0 32 3 0 12 1 0 58 chain 24950 chr3 198022430 + 183563996 183564292 AluSp 311 + 0 295 105059 35 3 0 240 0 2 18 chain 17852 chr3 198022430 + 183570689 183570971 L1MB2 1706 + 495 785 133235 6 0 7 29 27 26 77 6 8 137 chain 4468 chr3 198022430 + 183592471 183592521 Tigger1 2417 + 485 535 201139 50 chain 41945 chr3 198022430 + 183595016 183595543 Tigger1 2417 + 1716 2249 66693 186 0 3 157 0 1 80 0 2 104 chain 79184 chr3 198022430 + 183604339 183605309 LTR13 1007 + 0 1007 43958 73 2 0 308 1 6 30 0 22 217 1 11 74 0 1 73 0 1 191 chain 80633 chr3 198022430 + 183617203 183618251 MER11C 1089 + 0 1063 43330 246 0 9 62 0 4 65 1 0 146 47 46 98 1 0 14 0 4 5 1 0 38 0 1 127 0 1 54 1 0 84 0 1 58 chain 3191 chr3 198022430 + 183679838 183679875 MER20 218 + 54 91 221087 37 chain 14144 chr3 198022430 + 183679939 183680141 MER47A 366 - 103 344 144057 122 5 4 35 6 46 34 chain 24736 chr3 198022430 + 183710309 183710606 AluYk4 311 + 18 311 106245 100 4 0 193 chain 6130 chr3 198022430 + 183711981 183712066 Cheshire 1285 - 623 709 184184 19 0 1 22 1 0 31 0 1 12 chain 6427 chr3 198022430 + 183719351 183719459 MER20 218 + 85 195 181808 13 18 19 39 0 1 38 chain 13040 chr3 198022430 + 183723427 183723583 L1PA5 6144 + 5992 6143 148077 143 5 0 8 chain 44892 chr3 198022430 + 183747675 183748198 L1PA5 6144 + 5615 6140 63186 250 13 15 260 chain 19778 chr3 198022430 + 183803125 183803601 MER92C 513 + 33 484 127882 17 148 123 23 8 7 59 10 11 48 7 6 124 9 10 23 chain 6892 chr3 198022430 + 183803611 183803688 L1P1 4361 + 15 92 178240 77 chain 29255 chr3 198022430 + 183817220 183817528 AluYb8 318 + 0 308 87764 308 chain 14969 chr3 198022430 + 183820249 183820422 L1PA4 6152 + 5972 6152 141416 167 0 7 6 chain 3842 chr3 198022430 + 183838945 183838991 L1MB7 1623 + 1113 1159 209753 46 chain 23117 chr3 198022430 + 183865305 183865587 AluSq10 312 + 20 299 115055 91 2 1 181 2 0 6 chain 25976 chr3 198022430 + 183974451 183974748 AluSp 311 - 5 302 100110 297 chain 23904 chr3 198022430 + 183985070 183985427 THE1B 368 - 0 368 110891 48 16 14 5 0 1 101 2 0 21 13 12 109 1 16 41 chain 21202 chr3 198022430 + 183988130 183988407 AluSp 311 + 12 294 123204 124 11 15 57 0 1 85 chain 23631 chr3 198022430 + 184016207 184016495 AluSx1 309 + 0 286 112413 107 1 0 18 1 0 161 chain 24620 chr3 198022430 + 184057262 184057547 AluSp 311 - 26 311 106888 285 chain 22768 chr3 198022430 + 184074149 184074445 AluSp 311 + 0 300 116735 48 11 14 36 11 13 14 1 0 175 chain 28727 chr3 198022430 + 184083479 184083788 AluYa5 310 + 0 306 90223 132 3 0 174 chain 23430 chr3 198022430 + 184114188 184114462 AluSp 311 - 15 288 113477 143 1 0 130 chain 67505 chr3 198022430 + 184150839 184151668 L1PA8 5853 - 0 823 49445 93 1 0 19 2 1 50 1 0 10 2 1 69 2 0 48 2 1 158 8 9 364 chain 25847 chr3 198022430 + 184152363 184152668 AluSx4 309 - 3 309 100667 100 1 2 204 chain 25043 chr3 198022430 + 184172791 184173093 AluSc8 310 + 5 309 104581 48 1 0 79 0 3 174 chain 30453 chr3 198022430 + 184175644 184176316 THE1B 368 - 0 368 83527 196 1 0 135 303 0 37 chain 8277 chr3 198022430 + 184180264 184180402 MER2 342 + 85 227 169525 24 1 0 5 2 0 78 16 23 12 chain 24692 chr3 198022430 + 184199735 184200075 MSTC 436 - 49 416 106484 44 15 18 159 3 27 119 chain 54352 chr3 198022430 + 184203800 184206027 L1PA16 3655 - 36 1379 56131 16 1 0 7 76 56 148 1376 521 79 33 23 8 0 2 84 1 0 331 0 1 67 chain 14423 chr3 198022430 + 184212457 184212645 MER89 557 - 2 190 143141 106 1 0 4 0 1 43 1 0 21 0 1 12 chain 25094 chr3 198022430 + 184252137 184252436 AluY 311 + 8 311 104323 48 0 3 73 0 1 178 chain 6627 chr3 198022430 + 184371195 184371281 L1MEf 1413 + 1205 1291 180255 86 chain 3553 chr3 198022430 + 184416810 184416849 LTR8 732 - 104 143 214482 39 chain 73773 chr3 198022430 + 184422010 184424261 HUERS-P1-int 2401 - 262 2167 46635 15 2 0 47 38 26 10 1 0 3 1 0 14 45 22 13 5 0 14 1 0 10 2 0 27 2 1 12 1 0 10 1 0 4 83 27 6 1 0 10 5 0 18 618 498 71 17 13 16 1 4 8 2 0 81 3 0 27 1 0 8 4 2 27 0 1 19 6 5 45 2 0 9 1 0 10 1 0 176 11 3 107 1 5 12 5 9 98 7 6 18 36 24 19 3 0 25 18 0 23 2 0 8 1 0 38 1 0 5 7 4 54 1 0 6 126 75 14 4 0 34 4 0 9 chain 11017 chr3 198022430 + 184424902 184425044 LTR8 732 - 0 144 156134 42 1 3 99 chain 3965 chr3 198022430 + 184445627 184445678 MER20B 722 + 196 247 207914 51 chain 23916 chr3 198022430 + 184508545 184508834 AluSq4 311 - 23 311 110837 155 2 1 132 chain 83302 chr3 198022430 + 184510465 184512309 L1PB1 5432 - 12 2279 42201 16 8 7 6 1 0 7 0 1 13 1 0 24 2 0 14 1 0 5 2 0 19 25 12 16 5 4 40 18 16 53 2 0 10 4 0 10 1 0 33 1 0 11 8 0 140 0 1 39 2 0 235 11 10 34 291 1065 317 310 0 109 chain 10421 chr3 198022430 + 184515430 184515928 MER30 238 + 40 238 158593 51 332 34 13 9 10 44 3 0 46 chain 12033 chr3 198022430 + 184552165 184552297 L1PA4 6152 + 6019 6151 152057 132 chain 10843 chr3 198022430 + 184559884 184560000 AluYc 301 + 181 297 156814 116 chain 24043 chr3 198022430 + 184563276 184563563 AluSp 311 + 11 302 110096 80 0 4 207 chain 30318 chr3 198022430 + 184601868 184602217 L1PA6 6164 - 5 354 83865 349 chain 40893 chr3 198022430 + 184624745 184625338 MER4A 717 - 9 717 68035 4 1 0 10 10 0 67 0 2 22 5 12 181 0 40 82 3 0 20 4 0 11 0 83 51 0 1 36 1 2 14 3 2 68 chain 10668 chr3 198022430 + 184627916 184628047 AluYk4 311 - 8 138 157534 53 2 1 76 chain 9333 chr3 198022430 + 184635594 184635715 MLT1A0 366 - 0 122 163889 33 1 2 87 chain 3998 chr3 198022430 + 184666409 184666491 LTR49-int 1717 - 551 632 207425 12 28 27 42 chain 47097 chr3 198022430 + 184668414 184668961 L1PA8A 6298 - 15 563 61127 400 0 1 147 chain 83212 chr3 198022430 + 184672518 184673481 LTR13A 966 + 0 966 42247 150 0 3 513 2 0 65 0 4 32 2 0 199 chain 39650 chr3 198022430 + 184677632 184678073 L1PA5 6144 - 4 445 69823 441 chain 4304 chr3 198022430 + 184694246 184694294 L1PREC2 3366 - 1597 1645 203174 48 chain 21063 chr3 198022430 + 184712560 184712904 THE1B 368 - 0 368 123684 125 35 45 26 26 25 87 1 16 44 chain 10010 chr3 198022430 + 184720617 184720910 L1PB2 3958 - 124 413 38026 81 2 0 71 1 0 65 1 0 72 chain 121911 chr3 198022430 + 184720944 184722318 SVA_D 2077 - 2 2077 30409 558 0 621 267 0 40 83 0 39 442 5 6 19 chain 36727 chr3 198022430 + 184722329 184723404 L1PB2 3958 - 413 1469 38026 72 2 1 21 8 7 5 2 0 58 5 4 14 1 0 54 2 0 102 42 9 54 8 30 51 1 2 64 1 0 73 1 0 206 0 1 228 chain 393540 chr3 198022430 + 184731076 184735729 HERVK9-int 4720 - 0 4666 10336 48 0 1 55 0 4 164 0 1 273 0 2 865 3 0 7 5 4 364 5 0 144 0 12 45 4 0 388 0 2 205 0 2 365 0 1 18 0 1 4 1 0 110 0 1 19 0 1 465 0 1 324 0 1 48 1 0 482 0 1 130 1 0 6 12 13 11 2 1 7 1 0 66 1 0 4 chain 39260 chr3 198022430 + 184737078 184737595 MER9a3 513 - 0 513 70379 57 31 22 25 0 2 229 0 1 157 5 7 13 chain 43587 chr3 198022430 + 184776660 184777393 L1MA5A 2387 + 1587 2291 64700 29 21 23 70 0 4 40 14 10 26 1 4 50 1 0 149 1 0 41 1 0 18 9 12 32 4 0 9 7 6 45 2 0 60 3 0 15 28 0 27 7 11 23 chain 3089 chr3 198022430 + 184786519 184786564 MLT1A1 405 + 362 405 223121 31 3 1 11 chain 15979 chr3 198022430 + 184819245 184819629 MSTA 426 - 8 426 138410 73 26 45 43 117 124 20 9 14 42 0 1 41 0 2 13 chain 55351 chr3 198022430 + 184819629 184820491 L1PA13 3608 + 2638 3501 55489 6 1 0 137 15 16 66 1 7 4 1 0 206 6 10 42 8 13 14 1 0 110 6 4 60 2 1 26 1 2 12 4 5 12 1 0 5 2 0 47 2 0 5 2 0 20 5 4 19 3 0 10 chain 44296 chr3 198022430 + 184821443 184822008 MER61F 604 + 0 564 63829 357 1 0 92 1 2 81 1 0 32 chain 43798 chr3 198022430 + 184822990 184823501 MER9a2 513 + 0 513 64457 454 1 3 56 chain 343419 chr3 198022430 + 184824294 184828321 HERVK9-int 4720 + 54 4719 11802 4 1 0 66 1 0 7 2 1 19 0 1 10 2 1 140 1 0 1082 0 641 73 1 0 233 0 5 82 0 3 212 3 0 96 4 0 1714 0 1 274 chain 42179 chr3 198022430 + 184828338 184828817 MER9a2 513 + 13 493 66427 374 0 1 105 chain 59455 chr3 198022430 + 184838212 184839140 L1PB1 5432 + 4513 5427 53140 192 0 2 91 10 0 14 0 4 194 7 9 84 1 2 9 5 0 16 0 1 7 1 0 8 1 0 9 24 18 47 2 1 60 1 0 15 4 0 2 9 0 29 7 4 15 2 0 24 1 0 9 4 25 18 1 0 5 chain 5051 chr3 198022430 + 184857869 184858012 MER8 282 - 61 281 194619 27 73 150 43 chain 25475 chr3 198022430 + 184864064 184864374 AluSp 311 - 1 310 102335 168 11 10 131 chain 7979 chr3 198022430 + 184892240 184892333 L1PA8 5853 + 5760 5853 171173 93 chain 3721 chr3 198022430 + 184899358 184899612 HERV16-int 1105 + 166 422 211637 30 129 130 26 50 51 19 chain 4955 chr3 198022430 + 184915884 184915945 L1MB3 1562 - 447 508 195642 61 chain 16264 chr3 198022430 + 184938095 184938368 Tigger3a 397 + 43 372 137570 28 19 68 15 0 1 157 27 29 11 0 4 16 chain 15118 chr3 198022430 + 184953970 184954149 MER1B 344 + 86 265 140993 179 chain 84262 chr3 198022430 + 184958618 184959822 L1PB1 5432 - 12 1191 41794 16 1 0 11 7 6 17 1 0 24 2 0 14 8 5 17 9 0 14 4 0 15 1 0 44 1 0 13 8 7 50 2 0 6 19 14 9 1 0 24 13 11 50 2 1 5 0 1 26 4 6 22 0 3 5 0 1 360 0 2 309 0 1 70 chain 40943 chr3 198022430 + 184959827 184960362 L1PB1 5432 + 3673 4224 67983 60 18 33 195 1 2 29 1 0 158 2 1 54 0 2 17 chain 14500 chr3 198022430 + 184971200 184971363 L1PA4 6152 + 5984 6152 142891 157 0 5 6 chain 26052 chr3 198022430 + 184973080 184973457 MER51B 395 - 16 395 99820 37 7 11 80 24 23 43 1 0 185 chain 39697 chr3 198022430 + 184974376 184974950 MER57-int 2662 - 1715 2622 69760 53 0 23 44 10 8 236 0 320 74 0 11 70 1 0 9 47 29 30 chain 38495 chr3 198022430 + 184976159 184976609 L1PA6 6164 - 2 475 71443 237 0 23 213 chain 125616 chr3 198022430 + 184976616 184978068 L1PA6 6164 - 8 1471 29210 502 0 2 336 0 4 20 0 5 44 0 1 4 1 0 545 chain 53895 chr3 198022430 + 184982424 184983176 LTR17 781 + 3 753 56429 56 1 0 102 1 0 18 1 0 57 3 2 89 1 0 135 4 0 39 1 6 199 6 7 15 6 7 18 chain 72982 chr3 198022430 + 184991374 184992193 L1PA4 6152 - 9 829 47035 141 0 1 678 chain 9372 chr3 198022430 + 184995322 184995430 Tigger1 2417 - 827 934 163704 95 1 0 12 chain 16369 chr3 198022430 + 185001686 185001873 AluSc5 308 - 8 197 137286 61 0 2 126 chain 4323 chr3 198022430 + 185010264 185010371 MIRc 230 + 85 186 202921 20 47 41 40 chain 29890 chr3 198022430 + 185017341 185017653 AluYb8 318 - 6 318 85131 312 chain 27979 chr3 198022430 + 185028955 185029310 THE1A 353 - 0 353 93074 204 2 0 4 0 1 34 2 1 109 chain 24792 chr3 198022430 + 185041121 185041411 AluSp 311 - 9 302 105932 110 0 3 180 chain 22219 chr3 198022430 + 185061256 185061517 AluSc 308 - 26 287 119264 261 chain 27323 chr3 198022430 + 185091657 185092024 LTR7B 505 - 64 505 95196 28 1 0 5 0 1 45 1 0 80 0 3 27 5 29 10 0 38 60 0 10 12 1 0 42 0 1 50 chain 262280 chr3 198022430 + 185093802 185097314 HERVH-int 3825 - 0 3747 15570 530 3 4 17 32 31 227 1 0 83 0 1 86 0 1 45 11 0 705 4 9 76 1 13 170 3 0 47 0 1 149 0 11 42 5 0 264 0 1 88 15 0 30 49 52 230 24 24 43 1 4 46 5 273 6 0 1 17 0 1 6 81 45 30 18 17 66 1 0 255 chain 4825 chr3 198022430 + 185097617 185097679 MER5A 189 + 2 64 197074 62 chain 7670 chr3 198022430 + 185100369 185100510 MSTB1 431 + 64 203 173100 54 36 35 38 1 0 12 chain 11185 chr3 198022430 + 185100510 185100636 AluY 311 + 0 125 155488 43 1 0 82 chain 46886 chr3 198022430 + 185100652 185101175 L1PA3long 6157 - 1 524 61318 258 1 0 253 0 1 11 chain 19631 chr3 198022430 + 185103905 185104336 L1PA11 4918 + 4226 4629 128309 105 10 4 58 2 1 13 2 0 49 19 17 15 0 2 18 44 31 15 1 0 9 53 48 18 chain 28264 chr3 198022430 + 185113141 185113445 AluYa5 310 - 6 310 92064 304 chain 20672 chr3 198022430 + 185160633 185160889 AluSg7 307 - 15 270 125067 166 1 0 89 chain 81087 chr3 198022430 + 185188559 185190626 HSMAR2 1300 - 0 1299 43148 28 8 7 140 6 7 26 1 0 221 0 1 24 0 3 5 3 0 47 1 0 25 477 21 100 25 19 210 13 12 63 317 0 13 2 3 34 8 9 78 6 10 40 7 14 23 21 20 20 6 7 69 chain 24141 chr3 198022430 + 185271376 185271655 AluY 311 + 1 290 109514 127 0 5 27 0 5 125 chain 13027 chr3 198022430 + 185277507 185277672 L1PA7 6471 + 6289 6457 148147 99 1 4 65 chain 76424 chr3 198022430 + 185280335 185281303 LTR5_Hs 974 - 0 974 45245 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 533498 chr3 198022430 + 185282083 185288547 HERVK-int 6823 - 241 6823 3768 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 146 86 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 2 1 6 1 0 4 3 0 45 5 4 125 1 0 35 1 0 58 9 297 2731 0 3 727 5 1 196 1 0 6 7 2 371 1 0 438 1 0 311 1 0 19 1 0 28 2 0 205 1 0 34 0 3 263 12 0 22 15 12 21 1 0 39 1 0 19 1 0 23 1 0 14 1 0 5 chain 76284 chr3 198022430 + 185288547 185289515 LTR5_Hs 974 - 0 974 45319 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 6350 chr3 198022430 + 185361235 185361347 MER5A 189 - 60 180 182378 33 20 29 25 1 0 33 chain 3055 chr3 198022430 + 185476255 185476304 MIRb 242 + 144 192 223901 14 5 4 30 chain 2775 chr3 198022430 + 185504179 185504328 LTR7 482 + 136 283 229081 25 102 100 22 chain 6167 chr3 198022430 + 185512505 185512586 L1MB3 1562 - 42 122 183818 53 1 0 27 chain 55729 chr3 198022430 + 185517554 185518203 L1PA6 6164 + 5493 6141 55283 338 0 1 253 2 0 56 chain 83818 chr3 198022430 + 185518577 185519961 L1PA8 5853 + 4769 5847 41978 89 0 5 154 0 1 4 1 0 160 313 0 58 0 3 137 0 2 138 0 1 43 1 0 46 2 0 27 0 3 39 1 0 9 8 7 49 2 1 15 1 0 87 chain 5952 chr3 198022430 + 185558019 185558097 MER2 342 + 132 215 185660 6 0 5 72 chain 11144 chr3 198022430 + 185564725 185564847 L1PA3long 6157 + 6035 6157 155655 122 chain 16710 chr3 198022430 + 185612075 185612276 AluSp 311 + 88 287 136372 44 2 0 155 chain 60909 chr3 198022430 + 185627569 185628305 L1PA5 6144 - 1 751 52382 13 2 4 87 0 3 132 6 10 261 0 2 62 0 2 82 0 1 91 chain 19965 chr3 198022430 + 185640795 185641064 AluSp 311 + 10 281 127254 22 2 0 61 1 0 44 11 17 77 1 0 50 chain 26389 chr3 198022430 + 185662751 185663051 AluYk4 311 + 0 300 98455 300 chain 39453 chr3 198022430 + 185667595 185668046 LTR7 482 + 0 482 70083 247 0 31 204 chain 4063 chr3 198022430 + 185676229 185676280 MLT1B 390 - 300 351 206437 51 chain 7975 chr3 198022430 + 185679693 185679792 THE1C 375 + 248 347 171202 99 chain 24125 chr3 198022430 + 185720355 185720738 THE1D 372 + 0 372 109614 52 42 23 90 7 9 13 0 6 30 4 0 6 8 12 131 chain 168899 chr3 198022430 + 185723049 185724890 L1PA3long 6157 - 0 1841 22176 1841 chain 72658 chr3 198022430 + 185733644 185736086 Tigger1 2417 - 379 2203 47190 64 30 23 245 18 16 204 22 20 45 1 2 114 1 0 6 1 0 260 1385 779 46 chain 3856 chr3 198022430 + 185754405 185754445 MER5A 189 - 69 109 209496 40 chain 22653 chr3 198022430 + 185784949 185785251 AluSc 308 + 8 297 117307 100 0 1 174 11 0 7 3 0 7 chain 15563 chr3 198022430 + 185851536 185851765 L1PA8 5853 - 0 226 139694 93 1 0 69 16 14 50 chain 5542 chr3 198022430 + 185872561 185872689 MER5A 189 + 5 138 189639 62 47 52 19 chain 4005 chr3 198022430 + 185928919 185929043 MER45A 178 - 0 129 207316 47 62 67 15 chain 26406 chr3 198022430 + 185936011 185936315 AluSc5 308 + 0 303 98389 131 1 0 172 chain 58677 chr3 198022430 + 185992178 185992837 L1PA5 6144 - 0 659 53593 659 chain 24681 chr3 198022430 + 186019137 186019426 AluY 311 + 3 293 106544 126 2 3 161 chain 30558 chr3 198022430 + 186029623 186029941 AluYb8 318 + 0 318 83296 318 chain 7618 chr3 198022430 + 186031349 186031457 MER5A1 166 + 11 120 173428 67 4 5 37 chain 41200 chr3 198022430 + 186059483 186059964 L1PA2 6032 + 5547 6028 67646 319 1 6 6 2 0 7 3 0 143 chain 24035 chr3 198022430 + 186063556 186063843 AluSg7 307 - 7 296 110140 168 0 1 111 0 1 8 chain 4205 chr3 198022430 + 186073159 186073304 HAL1-2a_MD 234 + 57 121 204481 12 9 0 21 72 0 31 chain 103221 chr3 198022430 + 186096948 186098070 L1PA3long 6157 + 5032 6157 35944 464 0 3 658 chain 47814 chr3 198022430 + 186098901 186099604 MER50 708 + 0 708 60614 43 6 10 33 0 1 8 4 5 71 1 0 182 36 0 12 4 39 25 3 0 5 0 3 7 5 6 258 chain 30013 chr3 198022430 + 186134339 186134690 L1PA5 6144 - 9 360 84763 243 2 1 80 0 1 26 chain 113652 chr3 198022430 + 186152652 186153996 SVA_B 1603 - 6 1601 33188 190 0 22 359 0 78 32 0 122 598 5 4 101 0 5 8 14 9 16 7 37 14 chain 14961 chr3 198022430 + 186154023 186154301 L1MB5 1630 - 683 957 141442 110 0 1 4 1 0 7 75 71 81 chain 5826 chr3 198022430 + 186160328 186160473 Charlie1a 1436 + 1 154 186897 20 61 69 64 chain 4997 chr3 198022430 + 186162660 186162748 Charlie1b 519 + 362 481 195177 24 7 39 34 1 0 22 chain 46187 chr3 198022430 + 186199073 186199786 L1MA4 2864 + 1328 2058 61861 147 4 10 171 32 40 126 10 9 4 0 1 69 16 18 33 0 1 59 8 9 5 1 0 28 chain 19028 chr3 198022430 + 186202372 186202658 L1MA2 4263 + 3837 4113 130038 118 12 10 93 14 7 40 1 0 8 chain 26329 chr3 198022430 + 186203259 186203533 AluYa5 310 + 29 303 98706 274 chain 159823 chr3 198022430 + 186216608 186219095 L1PA14 3548 - 73 2243 23365 10 1 0 10 6 0 40 1 0 17 1 0 11 1 0 9 4 2 33 16 11 111 1 0 84 1 0 6 2 0 10 14 10 106 2 0 4 2 0 48 2 0 14 3 1 189 314 0 60 1 0 153 2 1 68 0 1 230 14 12 28 10 11 50 0 12 210 0 3 262 0 12 76 3 10 5 2 0 240 chain 26434 chr3 198022430 + 186232912 186233366 LTR32 486 - 25 429 98290 111 0 35 20 93 7 37 7 8 186 chain 26947 chr3 198022430 + 186246090 186246445 THE1B 368 - 0 368 96462 74 1 0 96 2 0 23 1 0 9 1 0 23 0 4 47 1 0 33 0 15 44 chain 19610 chr3 198022430 + 186247920 186248148 AluSp 311 + 83 311 128361 228 chain 28588 chr3 198022430 + 186249325 186249709 L1PA8 5853 - 4 381 90789 88 2 1 14 8 7 50 1 0 10 2 1 68 2 0 46 1 0 92 chain 5303 chr3 198022430 + 186254260 186254374 MER53 195 + 0 122 191990 36 1 3 21 14 18 21 7 9 14 chain 11273 chr3 198022430 + 186279609 186279769 L1MA10 1535 + 832 994 155150 83 10 12 67 chain 27705 chr3 198022430 + 186324496 186324831 L1PA5 6144 - 13 340 94021 198 8 0 129 chain 15382 chr3 198022430 + 186345166 186345329 L1PA4 6152 - 352 515 140254 163 chain 21918 chr3 198022430 + 186345329 186345564 L1PA4 6152 + 5781 6016 120552 235 chain 265388 chr3 198022430 + 186375961 186379845 HERVH-int 3825 + 0 3825 15422 92 8 0 7 0 8 219 11 10 133 1 0 4 0 1 2 0 114 13 7 1 14 1 0 13 3 0 25 1 0 35 7 6 65 0 3 13 0 1 452 15 0 200 388 40 130 1 0 180 15 0 520 0 1 282 1 0 4 0 1 481 9 11 39 8 218 72 39 39 149 0 2 225 chain 113340 chr3 198022430 + 186401041 186403145 THE1B-int 1605 - 17 1605 33268 304 4 10 473 49 48 63 13 13 103 0 21 97 272 62 19 332 0 375 chain 20606 chr3 198022430 + 186402459 186402754 L1PA8 5853 + 5564 5853 125272 45 2 0 68 23 21 42 2 1 19 1 0 93 chain 3388 chr3 198022430 + 186415853 186415891 MLT2A1 477 - 2 40 217342 38 chain 41641 chr3 198022430 + 186472653 186473239 MER4A1_ 611 + 2 607 67102 18 0 5 10 0 15 71 4 3 215 0 4 92 13 11 56 10 9 87 1 0 9 chain 24619 chr3 198022430 + 186476307 186476612 AluSp 311 - 10 311 106892 12 2 0 161 2 0 128 chain 40363 chr3 198022430 + 186487020 186487550 MER41C 542 - 0 542 68788 213 0 2 11 1 2 23 0 1 168 1 4 24 0 4 40 0 1 49 chain 143646 chr3 198022430 + 186528656 186530271 SVA_D 2077 - 0 2077 25539 12 2 0 632 1 93 132 0 78 72 5 142 45 0 117 129 0 40 585 chain 5446 chr3 198022430 + 186553567 186553656 L1MA4 2864 + 2729 2809 190560 8 7 0 30 2 0 42 chain 7577 chr3 198022430 + 186577358 186577445 MSTD 398 + 311 398 173685 87 chain 169315 chr3 198022430 + 186581370 186583392 SVA_E 1901 + 14 1901 22140 131 2 0 672 128 0 110 4 0 29 5 0 11 0 12 700 27 19 203 chain 10283 chr3 198022430 + 186582175 186582303 SVA_E 1901 + 865 989 75543 62 4 0 62 chain 63792 chr3 198022430 + 186583462 186584275 LTR5_Hs 974 - 163 974 51103 34 0 19 24 10 13 179 3 4 122 7 0 153 19 1 262 chain 153949 chr3 198022430 + 186591022 186592862 SVA_D 2077 + 0 2077 24094 15 0 3 19 0 5 31 0 1 600 0 114 10 0 3 107 0 136 291 46 66 71 49 0 504 0 4 97 chain 1791 chr3 198022430 + 186592095 186592141 SVA_D 2077 + 1130 1176 126967 46 chain 2789 chr3 198022430 + 186592212 186592244 SVA_D 2077 + 1325 1357 208531 32 chain 18511 chr3 198022430 + 186594038 186594236 AluYf4 310 - 7 205 131471 198 chain 106977 chr3 198022430 + 186602163 186603369 SVA_D 2077 - 18 2054 34980 113 0 55 438 0 537 110 0 236 333 0 2 212 chain 72543 chr3 198022430 + 186604662 186605623 LTR5_Hs 974 - 0 974 47247 103 20 18 19 8 15 67 8 0 7 9 17 72 1 0 188 0 1 177 0 1 122 1 0 39 5 13 115 chain 75640 chr3 198022430 + 186611008 186611975 LTR5_Hs 974 + 0 974 45690 289 0 1 177 0 1 249 20 28 7 8 0 67 8 15 37 2 0 103 chain 14164 chr3 198022430 + 186613005 186613221 MER9a1 513 + 0 228 144001 24 0 23 12 30 19 150 chain 49515 chr3 198022430 + 186614845 186615486 LTR6A 649 + 0 643 59380 22 1 0 25 0 1 4 3 1 14 25 27 291 0 2 105 0 1 94 1 0 56 chain 23360 chr3 198022430 + 186615754 186616047 AluSc 308 - 8 298 113870 34 3 1 8 1 0 247 chain 526257 chr3 198022430 + 186621330 186627796 L1PA7 6471 - 10 6471 4565 135 33 32 674 1 4 667 10 9 241 0 19 663 10 8 512 1 0 5 1 0 6 1 2 384 5 9 139 5 6 41 0 2 270 0 1 92 1 0 316 0 3 55 1 6 118 0 1 285 37 7 630 0 2 785 12 11 115 29 19 130 1 2 55 chain 27906 chr3 198022430 + 186630809 186631115 AluYa5 310 + 1 303 93343 126 4 0 176 chain 11912 chr3 198022430 + 186658299 186658492 MER30 238 + 25 232 152543 61 1 0 4 0 1 8 0 1 7 3 0 12 7 21 56 7 9 27 chain 7428 chr3 198022430 + 186669778 186669869 MSTB1 431 - 6 97 174591 91 chain 31505 chr3 198022430 + 186673050 186673771 L1PA10 4194 - 31 434 81633 13 1 0 34 4 1 33 2 0 139 312 0 183 chain 23076 chr3 198022430 + 186709907 186710258 THE1D 372 + 0 372 115272 19 0 3 8 1 0 44 3 0 8 0 4 87 6 26 25 1 0 109 18 17 22 chain 49430 chr3 198022430 + 186728303 186728846 LTR6B 557 + 0 542 59434 50 1 0 492 chain 4656 chr3 198022430 + 186729486 186729540 LTR6B 557 + 329 383 199001 54 chain 36870 chr3 198022430 + 186741260 186741684 L1PA4 6152 + 5727 6152 73694 51 0 1 203 1 2 163 1 0 5 chain 523911 chr3 198022430 + 186770087 186776203 L1PA6 6164 - 2 6150 4776 8 3 0 2087 0 1 178 0 1 294 14 16 61 1 0 202 2 1 96 7 1 890 0 1 111 0 2 66 0 3 1147 0 16 156 0 17 342 6 5 48 0 1 397 chain 32539 chr3 198022430 + 186834941 186835511 L1PB1 5432 - 12 495 79962 16 1 0 13 2 0 21 1 0 9 1 0 15 2 0 14 1 0 5 2 0 30 17 5 12 1 0 30 0 1 12 1 0 18 1 0 52 2 0 10 4 0 11 1 0 8 1 0 24 67 12 165 chain 21028 chr3 198022430 + 186850987 186851327 THE1D 372 + 1 372 123819 159 48 61 4 1 0 24 0 1 41 4 22 59 chain 28349 chr3 198022430 + 186853059 186853425 THE1B 368 + 0 368 91771 172 9 8 175 0 3 10 chain 23990 chr3 198022430 + 186862074 186862494 THE1D 372 - 2 372 110383 30 1 0 132 113 64 144 chain 119073 chr3 198022430 + 186862494 186864112 THE1D-int 1627 - 0 1613 31382 5 0 1 180 0 1 13 0 1 91 6 5 161 23 25 7 2 0 37 1 6 185 24 9 81 0 1 184 4 3 177 0 2 141 0 2 272 1 0 23 chain 399973 chr3 198022430 + 186868706 186874056 L1PB1 5432 + 83 5418 10098 109 5 12 39 1 0 8 0 1 4 0 7 145 2 0 209 2 1 133 0 7 219 0 1 417 71 54 274 1 0 69 5 1 118 0 4 61 6 18 502 1 0 234 0 1 110 6 7 43 0 3 19 15 16 23 1 2 22 1 0 289 0 1 453 7 13 198 0 3 241 4 0 452 3 0 13 1 0 464 5 0 14 3 0 17 1 0 13 27 20 53 2 1 16 1 0 44 1 0 15 3 0 7 17 8 16 27 22 21 1 0 22 0 3 9 1 0 14 chain 13359 chr3 198022430 + 186875524 186875680 MSTA-int 1630 + 1450 1606 146852 156 chain 39332 chr3 198022430 + 186893303 186893742 LTR7 482 - 12 481 70277 175 0 31 36 1 0 227 chain 300533 chr3 198022430 + 186895008 186898598 HERVH-int 3825 - 0 3825 13392 284 0 1 202 8 218 177 0 1 938 0 4 284 4 31 360 0 2 544 1 0 49 31 9 51 0 20 19 25 1 12 5 18 20 1 0 9 2 1 38 5 0 310 0 11 211 chain 40726 chr3 198022430 + 186898600 186899050 LTR7 482 - 0 481 68271 185 0 31 265 chain 56405 chr3 198022430 + 186899798 186900550 MER4E1 777 + 0 777 54903 20 1 2 139 0 4 166 1 20 83 1 2 100 21 29 106 8 0 106 chain 26638 chr3 198022430 + 186902008 186902304 AluYk4 311 - 15 311 97520 296 chain 40881 chr3 198022430 + 186902942 186903414 LTR7Y 441 + 0 441 68048 165 31 0 276 chain 23346 chr3 198022430 + 186910094 186910485 MSTA 426 - 0 426 113945 54 6 0 54 6 26 35 32 31 20 2 0 58 16 40 108 chain 4587 chr3 198022430 + 186923885 186923945 L1MB3 1562 - 291 351 199775 60 chain 29208 chr3 198022430 + 186942128 186942433 AluYa5 310 - 5 310 88011 305 chain 32354 chr3 198022430 + 186971346 186971793 L1PA8 5853 + 5410 5853 80268 58 5 9 81 8 7 43 2 0 71 1 0 14 1 0 3 1 0 44 2 1 19 1 0 93 chain 8296 chr3 198022430 + 187018771 187018903 MSTB1 431 + 0 136 169427 13 1 3 38 8 10 72 chain 5099 chr3 198022430 + 187080334 187080393 L1PA6 6164 + 6104 6162 194091 54 1 0 4 chain 3667 chr3 198022430 + 187085138 187085179 LTR12C 1709 - 641 682 212443 41 chain 3712 chr3 198022430 + 187105790 187105833 MADE1 96 - 53 96 211755 43 chain 557193 chr3 198022430 + 187129911 187135940 L1PA2 6032 + 1 6031 591 256 1 0 225 0 1 5403 0 1 144 chain 39281 chr3 198022430 + 187140314 187140936 L1PA17 2846 + 2113 2711 70351 349 0 3 5 3 0 23 17 13 11 0 5 44 0 2 20 17 14 30 1 0 17 1 0 44 25 3 15 chain 402652 chr3 198022430 + 187142209 187146604 L1PA3long 6157 - 10 4407 10008 138 3 5 4254 chain 4236 chr3 198022430 + 187166644 187166697 MLT2D 439 - 262 315 204087 53 chain 28984 chr3 198022430 + 187184086 187184499 LTR7 482 - 0 482 89072 166 1 0 7 1 2 11 0 31 6 0 1 33 0 1 39 6 4 66 8 46 69 chain 290106 chr3 198022430 + 187185753 187189379 HERVH-int 3825 - 0 3825 14014 225 0 2 260 8 218 39 9 11 772 0 1 286 0 4 292 3 30 215 1 0 10 0 2 27 9 0 79 0 4 118 16 1 185 8 0 6 0 8 251 0 4 45 8 28 46 1 0 7 22 1 10 23 0 7 3 0 12 1 0 15 7 1 14 4 0 9 1 0 10 1 0 24 0 1 6 1 0 4 1 0 202 1 0 110 0 11 212 chain 196730 chr3 198022430 + 187192103 187194736 MER4-int 2692 + 11 2692 19448 23 9 7 44 4 0 6 9 10 27 3 0 128 19 41 120 1 0 201 1 2 94 0 1 208 16 14 53 3 6 69 0 9 24 0 4 230 12 8 54 0 16 55 3 4 26 0 1 252 0 1 5 1 2 22 0 4 107 1 0 56 0 2 51 2 0 276 8 0 18 2 0 274 5 15 111 chain 27156 chr3 198022430 + 187204593 187204940 THE1A 353 + 7 353 95734 99 6 5 242 chain 59927 chr3 198022430 + 187204940 187205729 THE1A-int 1579 + 0 1579 52859 24 2 3 196 5 8 151 0 1 189 16 800 95 0 2 93 1 0 17 chain 2329 chr3 198022430 + 187207985 187208010 L1ME1 1623 + 671 696 234984 25 chain 8216 chr3 198022430 + 187211374 187211512 L1PBa 3878 + 1449 2138 169849 46 23 574 69 chain 25009 chr3 198022430 + 187213087 187213463 L1PB2 3958 + 3471 3838 104741 32 5 3 34 2 0 77 1 0 64 5 4 70 3 1 19 9 8 55 chain 173565 chr3 198022430 + 187230519 187232674 L1P2 5180 + 2 2183 21641 133 23 34 24 2 1 53 3 2 258 5 0 8 1 0 272 9 7 133 0 25 1231 chain 36266 chr3 198022430 + 187239974 187240445 LTR15 485 - 7 485 74540 21 0 1 14 2 0 5 1 0 156 0 4 102 0 2 22 0 2 45 0 1 103 chain 28194 chr3 198022430 + 187258822 187259185 L1PA6 6164 + 5804 6159 92329 148 22 14 193 chain 14349 chr3 198022430 + 187259589 187259758 L1PA5 6144 - 12 180 143381 136 1 0 32 chain 7491 chr3 198022430 + 187259758 187259845 L1PA5 6144 + 5861 5948 174199 87 chain 22707 chr3 198022430 + 187262564 187262824 AluY 311 + 39 299 117041 260 chain 5267 chr3 198022430 + 187279232 187279380 MER49 923 - 180 318 192342 8 13 0 27 6 5 14 34 38 46 chain 26815 chr3 198022430 + 187301252 187301605 THE1B 368 - 0 363 96925 174 0 2 9 1 2 12 1 0 124 0 5 27 0 3 5 chain 85020 chr3 198022430 + 187305396 187306603 L1PA8 5853 - 0 1311 41505 93 1 0 19 2 1 49 4 3 9 1 0 71 2 0 44 1 0 257 104 212 88 8 6 150 0 4 121 0 1 183 chain 14295 chr3 198022430 + 187322752 187323046 L1PB1 5432 - 12 274 143577 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 14 5 8 3 0 10 7 0 5 1 0 44 19 17 50 3 1 11 chain 291706 chr3 198022430 + 187323610 187327640 L1PBa1 4058 - 18 4048 13922 42 1 0 15 2 1 10 1 0 4 1 0 6 12 9 9 1 0 21 3 0 4 1 0 4 2 1 19 23 15 14 1 0 15 3 1 104 2 0 45 1 0 29 1 0 6 1 0 26 0 3 26 0 4 56 10 0 24 5 11 73 10 8 98 2 101 133 51 0 640 10 1 60 0 1 49 0 1 162 6 7 4 1 0 52 0 1 329 1 2 149 0 4 29 14 10 6 0 2 118 14 15 6 1 0 353 1 0 444 2 1 86 6 5 98 0 1 127 3 2 81 1 0 34 1 0 4 1 2 155 19 16 10 12 2 24 chain 30698 chr3 198022430 + 187363063 187363414 L1PA7 6471 - 19 370 83041 351 chain 25478 chr3 198022430 + 187366451 187366819 THE1D 372 - 0 370 102323 122 1 0 55 20 18 16 0 1 28 8 12 118 chain 23940 chr3 198022430 + 187400575 187400849 AluY 311 + 33 308 110684 99 0 1 175 chain 15069 chr3 198022430 + 187434743 187434934 L1PA7 6471 - 6 198 141114 149 4 5 38 chain 28018 chr3 198022430 + 187483794 187484088 AluYb8 318 - 24 318 92939 294 chain 3928 chr3 198022430 + 187509390 187509486 MER58A 224 - 130 224 208450 7 4 0 7 0 1 29 27 28 22 chain 16663 chr3 198022430 + 187516730 187516917 LTR12C 1709 - 1522 1709 136503 187 chain 18478 chr3 198022430 + 187521130 187521388 L1PA8 5853 + 5580 5853 131564 30 2 0 67 1 20 43 3 2 17 2 1 93 chain 2526 chr3 198022430 + 187527768 187527812 MLT1J1 437 + 135 181 232824 6 0 1 21 4 5 13 chain 14768 chr3 198022430 + 187552345 187552548 L1PA7 6471 - 11 214 142036 136 6 5 9 1 2 51 chain 82113 chr3 198022430 + 187552561 187553542 L1P3 4156 - 674 1650 42720 300 0 1 83 1 5 230 1 0 233 10 1 123 chain 24044 chr3 198022430 + 187565733 187566018 AluY 311 + 15 300 110085 285 chain 180199 chr3 198022430 + 187577934 187580093 L1PA7 6471 + 4303 6459 20973 59 0 1 188 0 1 212 0 1 184 5 0 77 3 4 562 0 4 14 4 7 12 4 0 74 2 0 576 0 1 121 4 0 58 chain 553221 chr3 198022430 + 187580268 187586304 L1PA2 6032 + 0 6029 1044 257 1 0 450 0 1 1477 0 1 857 1 0 2252 4 0 722 3 0 12 chain 549646 chr3 198022430 + 187608008 187614002 L1PA2 6032 + 0 6029 1501 257 1 0 42 2 22 43 0 1 3291 0 1 159 0 1 1673 0 1 507 1 13 18 chain 10531 chr3 198022430 + 187641829 187642086 L1PB1 5432 + 5189 5424 158125 28 22 20 44 1 0 7 0 1 5 29 18 14 3 0 20 2 0 16 9 8 21 1 0 13 1 0 16 1 0 4 chain 76042 chr3 198022430 + 187728150 187729177 MER11A 1151 - 1 1145 45453 59 5 4 119 0 1 84 0 23 21 1 0 92 0 1 61 0 2 111 1 0 5 36 33 88 5 6 146 11 7 133 1 100 48 chain 5265 chr3 198022430 + 187730635 187730801 MLT1D 503 + 333 503 192368 8 1 0 7 17 18 23 54 58 56 chain 29886 chr3 198022430 + 187738254 187738598 L1PA3long 6157 - 15 362 85145 256 0 3 88 chain 25634 chr3 198022430 + 187748085 187748380 AluSp 311 + 2 297 101566 295 chain 4214 chr3 198022430 + 187821651 187821702 MLT1D 503 + 442 493 204377 51 chain 78417 chr3 198022430 + 187825942 187826888 L1PA6 6164 - 5 960 44311 173 5 10 532 0 1 19 1 3 70 0 1 146 chain 4357 chr3 198022430 + 187826888 187826943 L1PA6 6164 + 5078 5134 197878 48 0 1 7 chain 4262 chr3 198022430 + 187890180 187890234 MIR 256 + 165 219 203719 54 chain 5708 chr3 198022430 + 187913429 187913550 MER33 330 + 95 213 188031 32 2 3 23 26 23 32 1 0 5 chain 20054 chr3 198022430 + 187944992 187945210 L1PA3long 6157 - 15 233 126960 218 chain 30457 chr3 198022430 + 188030568 188030930 L1PA5 6144 + 5780 6144 83521 350 1 3 11 chain 2815 chr3 198022430 + 188047187 188047373 Tigger4a 237 - 22 74 228556 26 128 0 8 3 0 5 3 0 13 chain 6418 chr3 198022430 + 188052521 188052602 L1MA5 2750 - 346 427 181875 81 chain 15366 chr3 198022430 + 188057195 188057474 THE1D 372 - 0 282 140305 59 0 1 66 21 21 14 44 45 27 0 1 48 chain 15478 chr3 198022430 + 188060811 188061055 L1PA8 5853 - 0 253 139969 75 0 1 8 1 0 9 1 0 17 1 0 24 2 14 15 10 8 41 0 3 30 2 0 8 chain 544462 chr3 198022430 + 188090497 188096643 L1PA4 6152 - 1 6146 2147 338 0 1 1524 0 2 1024 0 2 89 1 0 24 0 1 117 0 1 2452 1 0 116 6 0 454 chain 21645 chr3 198022430 + 188128956 188129272 L1PB2 3958 + 3451 3775 121594 13 0 1 5 4 8 61 0 6 72 1 0 45 1 2 15 1 0 67 3 1 28 chain 434549 chr3 198022430 + 188140750 188146155 L1PA7 6471 - 12 6465 9202 319 0 4 474 15 8 33 1 0 74 5 4 37 1 0 294 0 1 359 0 3 166 6 14 605 1 0 62 1 0 111 1 0 390 1 0 14 2 0 792 0 1 61 0 1 203 0 2 97 15 12 259 62 0 162 0 1110 381 1 0 400 chain 19129 chr3 198022430 + 188159916 188160160 L1PA6 6164 - 2 246 129746 150 12 12 82 chain 91902 chr3 198022430 + 188162306 188163437 L1PA7 6471 + 5347 6469 38996 6 3 0 268 1 0 81 1 0 8 8 7 293 3 1 296 17 18 134 2 0 10 chain 5613 chr3 198022430 + 188235204 188235315 MSTB 430 + 1 126 188944 56 32 46 23 chain 24978 chr3 198022430 + 188253790 188254096 AluSp 311 - 6 311 104913 177 1 0 128 chain 76420 chr3 198022430 + 188262231 188263054 L1HS 6032 + 5208 6030 45247 810 1 0 12 chain 30558 chr3 198022430 + 188304849 188305167 AluYb8 318 + 0 318 83295 318 chain 26916 chr3 198022430 + 188311250 188311775 L1PB1 5432 - 8 498 96570 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 51 36 15 1 0 44 1 0 16 2 1 53 2 0 9 26 20 23 3 0 13 3 2 47 15 16 103 chain 66259 chr3 198022430 + 188333524 188334347 L1PA8A 6298 - 609 1430 49971 47 5 3 154 1 0 124 0 5 140 5 1 347 chain 5768 chr3 198022430 + 188338813 188338901 L1PA7 6471 + 6365 6452 187452 42 8 7 38 chain 400898 chr3 198022430 + 188353832 188358301 L1PA3long 6157 + 0 6142 10058 152 0 1 211 0 1 193 2 0 219 1 129 111 2 1548 2819 1 0 758 chain 53374 chr3 198022430 + 188387382 188388050 L1PA5 6144 + 5472 6143 56790 18 10 1 46 0 10 91 0 2 341 0 2 5 2 0 155 chain 24654 chr3 198022430 + 188499394 188499697 AluSc8 310 + 5 302 106703 113 8 0 15 0 2 167 chain 6376 chr3 198022430 + 188499746 188499813 THE1C 375 - 308 375 182202 67 chain 16951 chr3 198022430 + 188501739 188502085 L1PB1 5432 - 14 329 135728 14 1 0 13 1 0 7 0 1 13 1 0 24 2 0 14 8 5 19 26 14 14 1 0 43 1 0 12 9 8 48 2 0 11 4 0 14 1 0 5 2 1 24 1 0 11 chain 14769 chr3 198022430 + 188503378 188503570 L1P5 443 - 6 201 142031 101 3 6 88 chain 100244 chr3 198022430 + 188526467 188527827 L1PA8 5853 - 0 1355 36710 93 4 3 4 0 1 11 2 1 45 33 32 28 2 1 26 2 0 44 1 0 146 2 1 333 0 2 67 7 5 25 0 1 8 1 2 476 chain 23439 chr3 198022430 + 188548117 188548410 AluSc8 310 + 2 302 113430 16 0 5 100 2 0 9 0 3 42 0 1 124 chain 26383 chr3 198022430 + 188556412 188556809 L1PA8 5853 + 5462 5853 98478 102 1 0 46 2 0 65 9 4 10 1 0 4 17 16 34 2 1 16 2 1 77 0 6 9 chain 23420 chr3 198022430 + 188598672 188598946 AluYk4 311 + 36 300 113541 82 10 0 182 chain 42372 chr3 198022430 + 188603283 188603745 L1PA3long 6157 - 354 816 66188 462 chain 32646 chr3 198022430 + 188603745 188604100 L1PA3long 6157 + 5802 6157 79767 355 chain 6870 chr3 198022430 + 188626009 188626102 MLT2B2 565 - 473 561 178433 76 5 0 12 chain 11892 chr3 198022430 + 188636718 188636868 Tigger4b 360 - 210 360 152640 150 chain 8433 chr3 198022430 + 188652654 188652752 MER30 238 + 138 236 168661 98 chain 64207 chr3 198022430 + 188655968 188656765 LTR17 781 - 0 781 50913 12 0 1 23 22 0 353 0 3 61 0 1 58 4 5 264 chain 158595 chr3 198022430 + 188683871 188685635 L1PA4 6152 - 1019 2787 23518 504 1 0 274 0 4 412 0 1 573 chain 91198 chr3 198022430 + 188685635 188686645 L1PA4 6152 + 5134 6152 39107 169 0 7 691 0 1 150 chain 142654 chr3 198022430 + 188687720 188689458 L1PA7 6471 - 7 1729 25703 207 0 2 13 24 5 616 1 0 143 0 5 479 5 7 32 5 0 213 chain 103427 chr3 198022430 + 188724729 188725848 L1PA2 6032 + 4912 6031 35891 1119 chain 256472 chr3 198022430 + 188728263 188732294 L1PA11 4918 - 437 4235 15909 6 2 0 26 1 0 43 1 0 12 2 1 67 1 0 75 1 2 67 0 1 32 9 24 40 1 2 74 3 0 199 0 1 100 7 8 137 373 3 583 0 1 40 0 3 29 2 8 112 1 0 14 1 130 94 0 1 238 0 1 43 0 4 18 0 1 44 38 6 91 0 3 142 1 0 132 10 7 68 2 1 47 0 1 4 6 5 65 0 1 162 36 33 20 5 4 55 4 24 28 14 15 68 0 2 13 0 6 6 9 0 243 4 0 55 6 7 4 1 0 76 13 14 91 1 2 13 chain 544074 chr3 198022430 + 188735021 188741041 L1PA3long 6157 - 0 6157 2200 5 0 1 2841 0 1 321 0 1 2078 0 128 209 0 4 203 0 1 211 0 1 152 chain 34895 chr3 198022430 + 188750389 188750772 L1PA3long 6157 - 0 384 76347 19 0 1 364 chain 243404 chr3 198022430 + 188767639 188770858 L1PB1 5432 + 2234 5417 16594 260 6 0 392 1 4 352 1 0 302 6 5 165 0 2 9 23 13 174 0 1 679 0 1 16 11 12 352 0 1 126 4 3 14 5 10 7 1 0 13 16 11 11 7 5 37 0 1 8 2 1 16 1 0 43 1 0 16 3 0 7 18 9 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 13689 chr3 198022430 + 188770878 188771088 Tigger1 2417 - 1441 1659 145634 65 10 13 32 8 13 95 chain 13125 chr3 198022430 + 188777578 188777738 L1PREC2 3366 + 1873 2040 147743 76 0 7 84 chain 19698 chr3 198022430 + 188787647 188787890 AluSc 308 + 61 299 128106 89 3 0 144 2 0 5 chain 156575 chr3 198022430 + 188804551 188806325 L1PA5 6144 - 253 2035 23787 80 0 1 510 6 7 634 0 1 28 0 3 346 0 2 170 chain 44216 chr3 198022430 + 188830990 188831479 L1P1 4361 - 43 530 63924 13 1 0 155 1 0 319 chain 21930 chr3 198022430 + 188831479 188831717 L1PA3long 6157 + 5919 6157 120501 238 chain 23260 chr3 198022430 + 188833978 188834264 AluSg7 307 - 21 306 114389 160 1 0 125 chain 21514 chr3 198022430 + 188837289 188837657 THE1C 375 + 0 375 122088 18 2 0 17 69 75 57 0 1 16 2 3 107 0 2 53 1 0 26 chain 3255 chr3 198022430 + 188846241 188846290 MER53 195 - 102 157 219883 18 2 8 29 chain 120933 chr3 198022430 + 188898027 188899602 THE1B-int 1605 - 0 1605 30714 526 11 13 84 0 3 5 3 0 257 8 9 203 4 6 43 1 26 430 chain 81309 chr3 198022430 + 188900877 188901928 MER11C 1089 - 26 1089 43040 197 0 1 127 0 1 30 0 1 4 1 0 10 0 4 93 62 63 211 0 4 67 0 1 249 chain 21504 chr3 198022430 + 188914210 188914512 THE1B 368 - 64 368 122131 61 9 8 21 0 4 9 1 2 30 1 0 105 1 0 64 chain 81372 chr3 198022430 + 188969159 188970127 LTR5_Hs 974 - 0 974 43018 103 2 0 37 8 15 530 0 1 288 chain 517344 chr3 198022430 + 188970838 188977241 L1PA7 6471 - 5 6468 5442 7 2 0 225 63 8 604 1 4 38 3 80 784 1 0 137 0 1 4 1 0 968 17 30 53 3 1 413 1 9 462 1 3 946 6 10 79 1 4 333 20 19 4 1 0 23 0 2 200 0 1 414 4 5 132 0 3 18 7 8 22 0 2 344 0 2 61 chain 41888 chr3 198022430 + 189002000 189002482 L1PA4 6152 - 9 488 66777 140 3 0 339 chain 33967 chr3 198022430 + 189046563 189046972 L1PA8A 6298 - 7 417 77664 94 7 0 11 1 8 64 0 1 232 chain 7063 chr3 198022430 + 189050139 189050227 LTR45C 530 + 0 88 177008 88 chain 18039 chr3 198022430 + 189103628 189103830 L1PA5 6144 - 12 214 132761 202 chain 15607 chr3 198022430 + 189121005 189121366 THE1B 368 + 0 357 139559 111 1 3 6 1 0 11 65 62 12 38 40 72 15 11 29 chain 59669 chr3 198022430 + 189140367 189141054 L1P1 4361 + 3643 4328 53009 505 1 0 157 1 0 23 chain 11991 chr3 198022430 + 189160710 189160862 L1PA8A 6298 - 8 161 152240 106 0 1 46 chain 50306 chr3 198022430 + 189161806 189162373 L1P2 5180 - 2626 3193 58529 567 chain 134312 chr3 198022430 + 189162373 189163875 L1PA4 6152 + 4646 6152 27148 655 1 0 573 0 1 23 1 0 243 0 5 6 chain 23422 chr3 198022430 + 189189265 189189564 AluSp 311 + 8 305 113520 268 8 6 23 chain 33726 chr3 198022430 + 189203457 189203886 L1PA7 6471 + 5992 6459 78052 131 1 20 120 0 1 20 19 37 138 chain 13593 chr3 198022430 + 189210526 189210843 L1PB1 5432 + 5126 5420 146002 12 8 6 13 6 2 9 2 0 19 0 1 32 2 1 15 1 0 45 1 0 13 40 33 5 1 0 14 2 0 24 1 0 22 1 0 11 7 6 11 chain 100039 chr3 198022430 + 189237723 189238811 L1PA3long 6157 + 5067 6157 36768 239 0 1 516 0 1 333 chain 133499 chr3 198022430 + 189276867 189278345 L1PA5 6144 - 9 1492 27319 837 0 5 641 chain 60448 chr3 198022430 + 189278346 189279028 L1PA5 6144 + 3976 4658 52610 682 chain 29153 chr3 198022430 + 189302105 189302431 L1PA5 6144 + 5818 6144 88295 326 chain 103037 chr3 198022430 + 189313731 189314949 LTR12C 1709 + 0 1708 35979 126 0 1 156 0 9 10 9 0 348 0 485 89 0 4 480 chain 35238 chr3 198022430 + 189328110 189328542 THE1B-int 1605 - 1173 1605 75875 432 chain 45004 chr3 198022430 + 189329081 189329861 L1PREC2 3366 - 322 1078 63056 35 24 22 16 36 19 30 3 1 14 53 40 14 1 3 44 1 0 32 0 1 5 28 36 444 chain 116637 chr3 198022430 + 189330345 189331896 THE1A-int 1579 + 1 1566 32251 11 2 3 154 2 1 5 0 1 312 1 3 172 3 4 4 1 0 448 0 11 200 12 11 19 15 16 190 chain 26067 chr3 198022430 + 189331908 189332271 THE1A 353 + 0 353 99764 110 1 0 92 1 0 94 19 11 46 chain 29504 chr3 198022430 + 189363299 189363657 L1PA6 6164 - 2 360 86622 110 1 0 33 3 4 211 chain 20758 chr3 198022430 + 189368161 189368526 THE1C 375 + 0 363 124764 23 3 1 39 29 30 49 0 4 33 22 19 129 6 5 18 1 0 13 chain 38867 chr3 198022430 + 189368554 189369046 THE1C-int 1605 + 18 518 70919 338 0 1 83 5 12 66 chain 23754 chr3 198022430 + 189438267 189438546 AluSp 311 + 26 305 111748 279 chain 11841 chr3 198022430 + 189442127 189442400 L1PB1 5432 - 2 251 152864 10 2 0 16 1 0 13 1 0 21 1 0 7 22 20 12 7 4 19 16 6 8 1 0 14 1 0 44 1 0 15 3 2 38 chain 93357 chr3 198022430 + 189468614 189469696 L1PA6 6164 - 4 1086 38551 143 15 14 908 0 1 16 chain 17958 chr3 198022430 + 189475476 189475804 MER50 708 + 7 309 132962 42 1 0 4 2 0 5 24 16 30 41 29 42 3 1 124 1 0 9 chain 8442 chr3 198022430 + 189477193 189477327 MER4E1 777 - 17 156 168612 59 18 23 57 chain 23616 chr3 198022430 + 189479526 189479866 THE1B 368 - 23 368 112493 143 0 2 23 0 1 4 2 0 116 10 16 18 9 7 15 chain 13750 chr3 198022430 + 189568380 189568527 L1PA4 6152 + 6005 6152 145438 147 chain 29446 chr3 198022430 + 189575912 189576222 AluYf4 310 + 0 310 86870 310 chain 86451 chr3 198022430 + 189649913 189650992 L1PA7 6471 - 1 1084 40989 155 20 18 286 0 2 5 8 6 277 0 3 92 0 2 183 8 9 45 chain 53464 chr3 198022430 + 189653068 189653804 LTR12 884 - 0 877 56712 484 0 22 102 50 103 16 0 66 84 chain 22595 chr3 198022430 + 189677051 189677298 L1PA3long 6157 - 5 252 117604 247 chain 76344 chr3 198022430 + 189685901 189686819 L1PA7 6471 - 3 932 45292 7 4 0 9 1 0 79 1 0 44 0 18 33 0 2 657 3 0 80 chain 24849 chr3 198022430 + 189698072 189698366 AluSx4 309 + 1 295 105629 294 chain 14156 chr3 198022430 + 189701719 189701875 L1PA4 6152 + 5995 6151 144021 156 chain 26761 chr3 198022430 + 189704981 189705290 AluSp 311 + 0 304 97119 120 5 0 184 chain 26182 chr3 198022430 + 189722189 189722470 AluYa5 310 - 29 310 99275 281 chain 38623 chr3 198022430 + 189744040 189744556 MER41A 554 + 0 518 71263 54 6 0 6 1 7 26 0 1 302 1 2 120 chain 4892 chr3 198022430 + 189745380 189745467 MADE1 96 - 1 94 196354 30 22 28 35 chain 23715 chr3 198022430 + 189769875 189770205 L1PA8 5853 - 0 322 111958 92 8 7 10 1 0 37 1 0 14 1 0 11 1 0 74 2 0 42 1 0 35 chain 16579 chr3 198022430 + 189784067 189784423 L1PB1 5432 + 5106 5427 136713 8 1 0 24 1 0 9 2 1 10 15 9 52 1 0 18 1 0 40 46 32 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 9 5 4 18 2 0 5 chain 18013 chr3 198022430 + 189806955 189807164 L1PA5 6144 + 5931 6140 132818 209 chain 43674 chr3 198022430 + 189851524 189852077 LTR6B 557 + 1 557 64602 50 2 0 308 3 5 37 0 2 44 2 0 34 12 13 6 0 1 33 0 1 22 chain 26632 chr3 198022430 + 189862388 189862784 LTR7 482 + 0 470 97548 69 8 46 109 0 1 41 8 40 59 1 2 52 12 14 37 chain 288283 chr3 198022430 + 189862798 189866328 HERVH-int 3825 + 0 3825 14142 22 1 3 15 0 11 38 1 8 372 1 0 4 0 1 56 1 0 40 2 1 9 1 0 9 1 0 14 17 49 4 1 0 42 2 1 80 1 0 447 15 0 138 0 16 305 4 31 291 0 4 286 0 1 136 0 3 633 9 11 39 8 218 102 3 0 5 1 4 144 5 7 225 chain 77570 chr3 198022430 + 189879357 189880394 MER11C 1089 + 0 1055 44705 246 0 9 62 0 4 16 0 3 46 1 0 66 1 0 80 55 54 89 1 2 13 1 5 5 1 0 37 0 1 127 0 1 54 1 0 135 chain 4931 chr3 198022430 + 189881657 189881731 MLT2A1 477 - 1 107 195925 50 4 0 7 0 36 13 chain 122208 chr3 198022430 + 189893958 189895402 LTR12C 1709 - 0 1709 30308 167 0 102 212 0 4 75 0 3 28 3 1 5 1 0 116 0 159 837 chain 25946 chr3 198022430 + 189919342 189919645 AluY 311 + 0 310 100225 131 1 2 50 0 6 121 chain 20631 chr3 198022430 + 189920624 189920988 THE1B 368 + 0 368 125188 111 4 6 60 40 37 13 22 30 49 5 2 60 chain 28398 chr3 198022430 + 189955414 189955710 AluYa5 310 - 14 310 91593 296 chain 89893 chr3 198022430 + 189967170 189968265 HERVL-int 5654 - 4559 5654 39685 466 6 5 272 0 1 351 chain 86479 chr3 198022430 + 189987323 189988305 L1PA4 6152 + 5168 6151 40976 938 0 9 24 5 0 7 3 0 5 chain 37588 chr3 198022430 + 189988400 189988891 L1PA8 5853 - 3 488 72701 89 2 1 19 2 1 61 4 3 68 2 0 46 1 0 197 chain 169851 chr3 198022430 + 190004197 190006047 L1PA3long 6157 - 0 1849 22072 148 1 0 1701 chain 121049 chr3 198022430 + 190058447 190059994 THE1B-int 1605 - 35 1605 30679 76 0 7 43 2 0 263 14 14 19 5 0 466 1 0 77 3 2 146 0 25 432 chain 3003 chr3 198022430 + 190079765 190079799 LTR9 672 + 397 431 224968 34 chain 21681 chr3 198022430 + 190080036 190080437 LTR8 732 + 332 732 121463 51 122 121 228 chain 29324 chr3 198022430 + 190088428 190088820 MLT2A1 477 + 0 399 87414 168 7 4 140 0 1 59 4 13 14 chain 21596 chr3 198022430 + 190117010 190117276 AluSp 311 + 0 259 121784 128 9 0 102 0 2 27 chain 5576 chr3 198022430 + 190117895 190117961 L1MA5A 2387 - 91 157 189316 66 chain 4996 chr3 198022430 + 190131218 190131279 THE1-int 844 - 160 220 195188 32 1 0 28 chain 4672 chr3 198022430 + 190138249 190138313 L1MA8 2339 + 1998 2061 198846 10 2 1 52 chain 65589 chr3 198022430 + 190155323 190156043 L1PA3long 6157 + 5433 6155 50300 550 1 3 169 chain 137367 chr3 198022430 + 190190453 190191999 SVA_D 2077 + 0 2077 26580 11 3 0 531 0 80 64 0 40 182 0 312 83 0 98 575 0 4 97 chain 24817 chr3 198022430 + 190236333 190236702 THE1B 368 - 0 368 105794 166 4 0 7 1 3 17 25 24 47 1 0 62 0 5 24 2 0 13 chain 231575 chr3 198022430 + 190267111 190270416 MER61-int 3695 - 11 3672 17227 40 9 3 46 2 1 106 18 18 35 3 4 52 0 4 29 1 0 90 0 1 98 8 5 36 1 2 178 6 5 11 0 3 22 1 0 33 1 0 96 0 5 60 1 2 84 8 6 418 26 30 28 12 11 328 4 0 8 0 2 51 5 6 191 0 1 134 0 4 38 0 2 19 1 0 174 0 3 40 5 6 252 19 17 40 7 11 25 9 11 9 1 0 138 8 11 41 59 397 55 1 0 8 1 2 32 0 1 19 1 0 23 chain 29109 chr3 198022430 + 190271567 190271877 AluYa5 310 + 0 309 88508 97 1 0 212 chain 27367 chr3 198022430 + 190290644 190290936 AluYa5 310 - 3 295 95059 292 chain 21189 chr3 198022430 + 190392816 190393107 AluSg7 307 + 10 301 123246 35 13 12 74 10 11 159 chain 5958 chr3 198022430 + 190396118 190396216 LTR9B 643 + 534 630 185611 54 17 15 27 chain 137159 chr3 198022430 + 190399822 190401849 HUERS-P3b-int 2065 + 15 2031 26607 20 6 18 41 3 0 42 9 14 27 0 2 126 9 10 44 1 0 220 0 1 106 4 0 67 0 1 4 9 8 10 1 0 45 8 7 28 2 1 86 0 1 235 1 0 41 0 1 126 0 1 41 1 2 79 2 1 44 6 4 20 5 7 8 2 0 42 0 2 16 1 0 25 1 0 44 5 6 7 1 0 32 3 1 72 2 0 14 6 3 11 2 0 55 4 0 32 18 1 15 0 9 90 chain 27654 chr3 198022430 + 190411270 190411629 MER4D1 891 + 0 356 94201 117 15 12 227 chain 24775 chr3 198022430 + 190450164 190450505 THE1B 368 + 1 360 106030 171 23 41 147 chain 21811 chr3 198022430 + 190487878 190488360 L1PB1 5432 - 5 459 120977 4 1 0 5 1 0 11 4 3 13 1 0 36 25 23 5 2 0 11 10 2 14 3 0 20 2 1 43 1 0 15 2 1 52 5 0 9 5 1 12 1 0 12 1 0 4 29 27 41 5 12 77 chain 25289 chr3 198022430 + 190517986 190518314 THE1A 353 + 0 341 103275 109 2 1 69 0 15 8 1 0 139 chain 59821 chr3 198022430 + 190518326 190519195 THE1A-int 1579 + 0 1571 52920 92 115 820 491 4 0 147 6 7 14 chain 7872 chr3 198022430 + 190518418 190518530 THE1A 353 - 152 278 171368 10 0 15 66 2 1 34 chain 27211 chr3 198022430 + 190519203 190519878 THE1A 353 + 0 353 95556 110 1 0 92 1 0 23 320 0 128 chain 3680 chr3 198022430 + 190544468 190544513 MADE1 96 - 2 47 212223 45 chain 9300 chr3 198022430 + 190597062 190597176 AluYc 301 + 182 294 164060 102 2 0 10 chain 189678 chr3 198022430 + 190615733 190618455 L1PB1 5432 + 2731 5409 20086 99 10 5 267 0 1 132 4 0 197 0 3 127 21 18 32 6 8 101 26 14 227 2 1 604 0 5 57 5 0 167 38 39 268 1 2 9 3 0 24 1 0 6 1 0 12 9 5 6 2 0 53 2 1 10 14 13 33 37 31 16 11 8 14 2 0 24 8 7 14 1 0 14 1 0 4 chain 37954 chr3 198022430 + 190637952 190638391 LTR7 482 + 0 474 72203 144 0 3 78 0 1 39 0 31 178 chain 295175 chr3 198022430 + 190638401 190641938 HERVH-int 3825 + 0 3825 13691 279 0 1 188 0 1 60 8 2 39 1 0 9 2 1 24 6 56 37 1 0 59 1 2 5 0 2 14 3 6 239 15 14 403 0 1 243 4 31 305 1 0 432 0 1 666 12 222 258 0 2 223 chain 34268 chr3 198022430 + 190643199 190643649 LTR7 482 + 0 482 77255 86 50 0 13 0 50 76 0 1 4 0 31 221 chain 6272 chr3 198022430 + 190646014 190646091 L1PA6 6164 + 6080 6158 182988 55 0 1 22 chain 115756 chr3 198022430 + 190651602 190653118 L1P3 4156 - 2486 4003 32543 82 0 3 33 1 0 338 0 4 292 0 8 284 9 10 98 17 8 105 4 0 85 2 1 58 41 40 61 0 1 6 chain 38287 chr3 198022430 + 190670485 190671064 LTR14B 630 - 1 630 71729 74 12 15 25 1 0 142 5 26 23 35 42 46 0 18 56 1 2 83 0 1 76 chain 88922 chr3 198022430 + 190673117 190674104 L1PA4 6152 + 5152 6140 40038 745 0 1 242 chain 73713 chr3 198022430 + 190682441 190683315 L1HS 6032 - 5145 6014 46667 174 7 0 24 0 3 71 0 4 246 0 1 39 6 0 307 chain 41837 chr3 198022430 + 190683315 190683778 L1PA3long 6157 + 5692 6156 66844 315 0 1 148 chain 24220 chr3 198022430 + 190696654 190696911 AluYa5 310 + 44 302 109094 89 0 1 168 chain 82386 chr3 198022430 + 190703848 190704907 MER11C 1089 + 0 1073 42593 220 0 5 21 0 9 62 0 4 369 7 9 38 0 1 38 8 0 89 0 1 54 1 0 144 0 1 8 chain 88507 chr3 198022430 + 190715601 190716604 L1PA5 6144 - 3 1002 40180 6 4 0 993 chain 36415 chr3 198022430 + 190716604 190717019 L1P1 4361 + 3334 3749 74347 415 chain 9444 chr3 198022430 + 190725839 190725942 L1PA3long 6157 + 6054 6157 163344 103 chain 508178 chr3 198022430 + 190728347 190734350 L1PA5 6144 - 15 6144 6306 757 0 2 76 4 0 7 0 3 1021 1 0 295 1 0 193 0 2 576 0 1 1001 0 2 622 0 3 135 1 0 39 0 96 78 6 7 44 9 0 27 1 7 300 0 17 11 17 0 639 3 15 15 11 24 5 0 1 108 chain 7774 chr3 198022430 + 190736311 190736414 L1PB2 3958 - 139 239 172457 44 1 0 26 2 0 30 chain 28786 chr3 198022430 + 190750339 190750666 L1PA4 6152 - 9 336 89960 327 chain 222773 chr3 198022430 + 190759954 190762355 L1PA2 6032 - 4 2409 17721 153 0 1 178 0 1 341 0 2 1729 chain 55692 chr3 198022430 + 190822586 190823267 LTR30 714 - 10 703 55311 13 4 8 56 0 1 28 0 2 342 6 11 232 chain 25381 chr3 198022430 + 190827921 190828204 L1PA2 6032 + 5746 6028 102775 135 1 0 147 chain 110869 chr3 198022430 + 190842247 190843563 SVA_B 1603 - 0 1556 33977 58 1 0 282 0 1 207 27 147 34 0 80 57 0 40 650 chain 5255 chr3 198022430 + 190865352 190865419 L1PA13 3608 - 545 614 192464 42 0 2 25 chain 6558 chr3 198022430 + 190867616 190867697 L1PA13 3608 + 335 416 180793 81 chain 6727 chr3 198022430 + 190884498 190884598 MADE1 96 + 1 94 179495 47 6 0 13 1 0 33 chain 47053 chr3 198022430 + 190903166 190903779 LTR12_ 688 + 0 688 61161 12 6 3 142 24 0 200 1 0 55 0 103 173 chain 404268 chr3 198022430 + 190903807 190908923 HERV9-int 5642 + 0 4824 9971 52 0 9 669 5 4 61 1 0 310 4 1 4 1 0 315 0 1 314 0 1 712 324 0 11 0 1 131 2 0 41 0 1 314 0 1 77 1 0 533 0 1 661 0 24 391 0 1 81 0 1 101 chain 57578 chr3 198022430 + 190910040 190910750 LTR12_ 688 + 0 688 54196 151 24 0 325 0 2 210 chain 7361 chr3 198022430 + 190910752 190910839 MSTA 426 - 339 426 175025 87 chain 13917 chr3 198022430 + 190976215 190976446 L1PA8 5853 + 5626 5853 144863 53 1 0 13 7 6 22 26 25 15 1 0 93 chain 76898 chr3 198022430 + 190985254 190986138 MER11D 897 - 0 897 45028 43 0 4 308 1 5 398 3 8 131 chain 9551 chr3 198022430 + 191003716 191003883 L1M1 2793 + 2513 2680 162823 27 27 29 59 1 0 46 1 0 6 chain 21431 chr3 198022430 + 191088013 191088260 L1PA4 6152 - 9 260 122400 240 0 4 7 chain 16917 chr3 198022430 + 191126817 191127021 L1PA5 6144 + 5938 6143 135802 58 0 1 146 chain 20880 chr3 198022430 + 191131404 191131692 AluY 311 + 6 294 124357 61 0 4 61 23 24 129 5 0 9 chain 21876 chr3 198022430 + 191133788 191134075 AluSx1 309 + 10 294 120729 119 2 1 76 1 2 78 3 0 8 chain 174112 chr3 198022430 + 191182901 191184839 L1PA3long 6157 - 0 1940 21582 171 0 2 1767 chain 53257 chr3 198022430 + 191184839 191185418 L1PA3long 6157 + 3659 4238 56533 579 chain 126750 chr3 198022430 + 191200209 191201785 THE1A-int 1579 + 0 1579 28868 113 4 7 320 0 2 764 2 0 373 chain 28153 chr3 198022430 + 191221560 191221867 AluYb8 318 + 0 302 92449 118 4 0 8 1 0 176 chain 23944 chr3 198022430 + 191224147 191224509 THE1B 368 - 0 364 110654 123 36 41 4 1 0 31 1 0 146 1 0 19 chain 3416 chr3 198022430 + 191246436 191246480 MLT2B1 522 + 478 522 216840 44 chain 119950 chr3 198022430 + 191264439 191266015 THE1B-int 1605 - 6 1603 31075 251 0 1 332 8 7 24 0 1 210 12 12 165 0 1 48 8 0 78 10 37 430 chain 27109 chr3 198022430 + 191266017 191266384 THE1B 368 - 0 368 95905 46 10 11 5 0 2 127 7 5 172 chain 153912 chr3 198022430 + 191268135 191269862 L1PA3long 6157 - 0 1709 24102 55 0 3 7 27 6 1638 chain 24189 chr3 198022430 + 191269862 191270131 L1PA3long 6157 + 4199 4468 105296 269 chain 15486 chr3 198022430 + 191283973 191284142 L1PA4 6152 + 5689 5858 139936 169 chain 51867 chr3 198022430 + 191293146 191293710 L1PA3long 6157 - 2 569 57702 394 0 3 170 chain 57728 chr3 198022430 + 191318407 191319059 L1PA3long 6157 + 5506 6157 54117 111 5 4 536 chain 60257 chr3 198022430 + 191331644 191332341 L1P3 4156 - 720 1418 52704 647 0 1 50 chain 118570 chr3 198022430 + 191332355 191333816 L1PA7 6471 + 5005 6461 31597 83 14 0 291 0 1 71 0 4 166 1 0 239 1 3 149 1 0 152 0 4 113 0 1 25 1 4 5 2 0 5 2 0 140 chain 36619 chr3 198022430 + 191340565 191340994 L1PA7 6471 - 787 1215 74067 63 1 0 365 chain 2229 chr3 198022430 + 191340994 191341019 L1PA7 6471 + 5685 5710 234144 25 chain 64213 chr3 198022430 + 191341022 191341778 L1PA7 6471 + 5711 6468 50904 746 0 1 10 chain 24014 chr3 198022430 + 191348065 191348346 AluY 311 + 3 285 110245 128 3 4 150 chain 6846 chr3 198022430 + 191358936 191359016 HY3 101 + 12 92 178613 80 chain 6056 chr3 198022430 + 191359121 191359197 HY3 101 - 9 85 184767 76 chain 31891 chr3 198022430 + 191365920 191366389 MER4A1 472 + 4 472 81022 80 2 0 141 49 50 197 chain 2085 chr3 198022430 + 191366982 191367179 THE1B 368 - 14 229 157005 42 8 27 41 1 0 4 1 0 4 27 31 13 13 8 10 0 2 33 chain 52011 chr3 198022430 + 191367208 191367916 LTR30 714 + 2 714 57621 211 9 0 11 2 0 6 4 15 9 1 0 20 1 2 172 9 10 169 2 6 39 2 1 41 chain 508 chr3 198022430 + 191367954 191368002 THE1B 368 - 293 341 157005 48 chain 16044 chr3 198022430 + 191369569 191369932 THE1B 368 - 0 368 138234 56 1 2 25 14 9 26 77 83 25 32 35 107 chain 41224 chr3 198022430 + 191376572 191377095 LTR17 781 + 259 772 67620 40 10 0 28 0 1 64 10 9 371 chain 11109 chr3 198022430 + 191378626 191378813 HERV17-int 4347 + 12 191 155563 14 2 1 45 14 10 30 2 0 19 9 8 52 chain 329721 chr3 198022430 + 191378813 191382739 HERV17-int 4347 + 13 4345 12213 14 1 0 52 1 0 33 2 0 26 2 1 178 1 3 54 0 2 64 0 1 52 20 1 37 0 1 87 8 16 29 0 404 356 0 1 387 1 10 364 0 5 956 2 0 521 0 1 284 0 1 274 0 1 75 4 0 41 chain 26444 chr3 198022430 + 191383055 191383381 LTR17 781 + 0 326 98251 119 0 9 44 1 2 125 10 0 27 chain 39636 chr3 198022430 + 191384048 191384498 LTR7 482 - 0 482 69844 187 0 31 38 0 1 225 chain 320930 chr3 198022430 + 191385757 191389714 HERVH-int 3825 - 0 3825 12562 314 0 2 414 0 3 1259 0 1 114 6 33 243 0 1 218 15 0 444 0 1 48 2 1 7 62 0 23 2 1 42 130 53 13 4 0 10 1 0 10 1 0 38 5 0 532 chain 4499 chr3 198022430 + 191389036 191389100 HERVH-int 3825 - 3222 3280 169812 14 4 0 9 1 0 10 1 0 25 chain 39365 chr3 198022430 + 191389725 191390167 LTR7 482 - 9 482 70224 177 0 31 265 chain 29970 chr3 198022430 + 191429076 191429498 LTR6B 557 - 0 557 84911 56 0 1 4 0 1 96 5 1 177 0 94 40 22 65 22 chain 19653 chr3 198022430 + 191436143 191436369 L1PA4 6152 + 5922 6152 128240 168 1 0 51 0 5 6 chain 309116 chr3 198022430 + 191450368 191454013 L1PA6 6164 + 2508 6162 13042 90 0 3 154 0 1 186 1 2 245 0 1 977 10 9 473 1 0 378 0 1 290 0 4 840 chain 37258 chr3 198022430 + 191485516 191486014 L1PA8 5853 - 0 493 73160 93 1 0 16 1 0 51 1 0 10 6 5 40 0 1 29 6 4 4 0 1 35 1 0 204 chain 26534 chr3 198022430 + 191502905 191503271 THE1B 368 - 0 368 97916 173 2 0 26 1 0 27 0 4 19 11 12 107 chain 28874 chr3 198022430 + 191505245 191505553 AluYa5 310 + 0 306 89565 97 2 0 209 chain 16776 chr3 198022430 + 191509662 191509954 THE1B 368 - 68 368 136182 59 1 0 5 37 46 18 1 0 96 12 13 63 chain 60695 chr3 198022430 + 191523725 191524462 MER4E 760 + 0 752 52474 23 0 1 251 1 15 462 chain 21321 chr3 198022430 + 191548290 191548567 AluY 311 + 5 277 122792 51 13 7 63 0 1 150 chain 14618 chr3 198022430 + 191548841 191549002 AluYc 301 + 139 300 142526 161 chain 519911 chr3 198022430 + 191551965 191558439 L1PA7 6471 + 0 6470 5170 240 0 10 66 0 10 76 3 4 83 28 25 63 13 10 91 0 1 61 1 13 497 6 0 8 1 7 1375 0 1 570 0 1 193 0 1 116 7 1 142 0 2 12 4 0 145 45 0 850 0 4 521 0 4 92 1 3 91 0 2 83 0 5 69 1 2 65 1 0 521 0 1 333 chain 4685 chr3 198022430 + 191559792 191559912 Tigger1 2417 - 25 150 198699 17 19 2 13 23 45 48 chain 7244 chr3 198022430 + 191574837 191574926 L1MA6 2487 - 320 409 175802 89 chain 25116 chr3 198022430 + 191593894 191594180 AluY 311 + 12 298 104190 286 chain 9649 chr3 198022430 + 191596069 191596214 L1PA16 3655 - 77 224 162357 82 1 0 4 12 15 46 chain 23840 chr3 198022430 + 191613172 191613567 LTR7 482 - 0 482 111251 49 12 14 32 0 15 17 2 1 64 0 32 33 0 1 109 46 84 31 chain 282274 chr3 198022430 + 191614824 191618488 HERVH-int 3825 - 0 3825 14521 225 0 2 180 7 8 72 8 218 39 9 11 462 14 0 343 6 7 317 11 0 204 4 5 129 22 21 112 1 0 24 25 15 519 10 3 7 0 7 113 0 1 16 0 2 7 5 6 51 2 1 12 2 0 30 31 25 13 2 1 13 22 12 12 1 0 9 2 1 24 0 1 4 1 0 6 1 0 535 chain 60402 chr3 198022430 + 191629138 191629823 L1PA5 6144 - 0 686 52634 258 0 1 427 chain 89318 chr3 198022430 + 191710148 191711454 L1PBa1 4058 + 2574 3873 39878 275 0 1 193 26 6 30 4 7 112 0 1 172 68 86 87 10 7 114 9 7 29 1 0 43 2 0 106 3 1 22 chain 86316 chr3 198022430 + 191711477 191712540 MER11B 1079 - 15 1073 41036 14 2 1 172 0 1 104 0 2 29 11 1 396 0 2 247 0 1 88 chain 4501 chr3 198022430 + 191754167 191754218 L1PA4 6152 - 261 312 200759 51 chain 10304 chr3 198022430 + 191754218 191754342 L1PA4 6152 + 6027 6152 159118 116 0 1 8 chain 4252 chr3 198022430 + 191787959 191788009 L1MC4a 1092 + 817 867 203851 50 chain 29119 chr3 198022430 + 191788897 191789311 LTR7 482 - 0 482 88459 116 2 1 59 0 1 7 0 31 42 0 1 109 8 46 10 4 5 22 4 1 31 chain 285558 chr3 198022430 + 191790570 191794231 HERVH-int 3825 - 0 3825 14315 83 0 1 139 5 7 140 0 1 124 0 210 39 10 12 967 11 16 370 4 31 133 1 2 108 0 1 211 16 1 200 0 3 80 0 1 166 1 0 49 2 1 5 0 1 12 0 20 35 68 0 25 24 0 12 1 0 15 25 15 9 1 0 10 1 0 24 0 1 6 1 0 9 1 0 165 0 1 141 0 11 212 chain 38018 chr3 198022430 + 191809202 191809675 LTR2B 499 - 0 490 72101 370 0 19 41 1 0 55 1 0 5 chain 25429 chr3 198022430 + 191854867 191855157 AluY 311 + 20 311 102545 112 0 1 178 chain 30558 chr3 198022430 + 191856097 191856415 AluYb8 318 + 0 318 83294 318 chain 559458 chr3 198022430 + 191867104 191873117 L1PA2 6032 - 2 6020 391 2888 0 4 1885 0 1 1240 chain 28232 chr3 198022430 + 191908257 191908563 AluYa5 310 - 4 310 92185 306 chain 3483 chr3 198022430 + 191909045 191909168 L1MC1 2226 + 2083 2191 215623 14 11 9 14 1 0 8 38 27 28 1 0 8 chain 2971 chr3 198022430 + 192031922 192031958 MLT1A0 366 + 261 297 225663 36 chain 9578 chr3 198022430 + 192061787 192061902 MER85 139 - 13 138 162705 26 0 10 89 chain 21280 chr3 198022430 + 192080028 192080294 L1PA6 6164 - 2 265 122927 9 3 0 136 0 1 4 1 0 113 chain 22055 chr3 198022430 + 192080790 192081038 L1PA5 6144 + 5896 6144 119996 248 chain 30605 chr3 198022430 + 192139256 192139619 L1PA7 6471 + 6107 6470 83192 363 chain 127850 chr3 198022430 + 192175023 192176595 THE1A-int 1579 + 0 1579 28607 44 0 1 308 0 1 28 1 0 58 0 2 11 2 3 13 0 1 32 0 1 197 0 1 878 chain 25328 chr3 198022430 + 192176595 192176947 THE1A 353 + 0 353 103080 49 0 1 44 1 0 13 26 27 219 chain 11256 chr3 198022430 + 192182337 192182489 L1PB1 5432 - 330 488 155204 71 4 10 77 chain 8785 chr3 198022430 + 192221635 192221837 L1PA15 4387 + 4166 4355 166746 19 1 0 23 4 0 9 1 0 6 10 11 33 6 3 26 1 3 15 3 1 12 16 11 17 chain 23395 chr3 198022430 + 192239740 192240010 AluY 311 + 35 306 113670 90 6 7 174 chain 8930 chr3 198022430 + 192251794 192251902 U13 108 - 0 108 165975 108 chain 36344 chr3 198022430 + 192294547 192295003 L1PA7 6471 + 6012 6469 74439 153 2 1 59 6 7 52 0 1 184 chain 26122 chr3 198022430 + 192305852 192306167 AluY 311 + 0 311 99516 118 5 0 14 0 1 178 chain 34331 chr3 198022430 + 192316633 192317043 L1PA7 6471 + 6042 6454 77167 198 0 1 66 1 2 145 chain 71774 chr3 198022430 + 192321259 192322271 MER11A 1151 - 0 1151 47578 31 5 9 74 6 5 173 5 38 12 2 1 61 0 4 52 15 18 126 0 7 11 14 8 20 0 1 56 14 15 135 4 0 66 1 0 62 1 100 66 chain 20168 chr3 198022430 + 192325809 192326241 L1MA3 4352 + 3956 4352 126618 85 1 0 35 0 1 12 92 67 80 4 0 22 2 0 24 2 1 5 1 0 25 25 22 17 chain 26809 chr3 198022430 + 192347787 192348136 MSTA 426 + 65 414 96942 34 0 1 104 7 6 204 chain 14404 chr3 198022430 + 192352024 192352335 MER2 342 + 0 341 143197 12 5 6 30 71 88 81 1 0 78 12 25 21 chain 4366 chr3 198022430 + 192357405 192357503 MER2 342 + 29 133 202374 27 22 27 32 4 5 13 chain 28539 chr3 198022430 + 192358890 192359193 AluYa5 310 - 7 310 91003 303 chain 46365 chr3 198022430 + 192377788 192378298 L1PA4 6152 + 5630 6140 61714 510 chain 26099 chr3 198022430 + 192383190 192383572 L1PA8 5853 + 5485 5853 99624 73 5 4 46 2 0 6 0 4 60 2 1 61 2 1 19 1 0 40 17 5 48 chain 2673 chr3 198022430 + 192406457 192406492 L1MA4A 3247 + 3011 3047 230748 26 0 1 9 chain 66124 chr3 198022430 + 192429011 192429751 SVA_C 1631 + 886 1630 50039 99 0 4 15 1 2 312 1 0 312 chain 5332 chr3 198022430 + 192441322 192441384 MER5A1 166 - 88 150 191711 62 chain 41809 chr3 198022430 + 192448046 192448784 L1MA5A 2387 + 1611 2302 66881 25 2 0 6 0 1 87 0 1 6 2 0 6 27 25 64 25 11 7 0 6 109 0 1 60 9 8 35 1 0 39 1 0 27 2 0 20 2 0 16 15 11 33 39 15 66 1 0 6 chain 561108 chr3 198022430 + 192457002 192463031 L1PA2 6032 - 1 6030 311 2214 0 1 2875 1 0 939 chain 19049 chr3 198022430 + 192470465 192470711 L1PA8 5853 + 5610 5853 129973 69 10 9 52 2 1 19 1 0 93 chain 459274 chr3 198022430 + 192476258 192482341 L1PA8 5853 + 108 5853 8434 197 15 3 276 0 3 6 1 0 40 0 6 11 20 7 6 0 1 119 0 3 88 6 5 132 0 1 133 3 0 88 1 2 46 1 0 370 2 1 123 1 0 243 0 1 73 0 1 378 1 4 6 0 4 483 0 1 27 0 1 11 2 0 600 10 1 50 321 0 213 0 1 34 0 2 101 1 0 127 3 5 82 7 9 41 0 5 61 2 0 530 6 6 11 1 4 46 12 6 64 0 2 157 0 1 354 1 0 43 1 0 46 2 0 69 1 0 11 1 0 48 8 7 15 1 0 93 chain 41704 chr3 198022430 + 192484417 192484879 L1PA4 6152 + 5684 6152 67021 450 0 6 12 chain 21464 chr3 198022430 + 192491950 192492280 THE1A 353 + 0 330 122278 71 17 17 21 27 26 28 0 1 166 chain 121328 chr3 198022430 + 192492304 192493814 THE1A-int 1579 + 0 1572 30587 15 1 3 394 0 2 32 1 38 51 0 1 586 24 44 406 chain 26710 chr3 198022430 + 192493821 192494175 THE1A 353 + 0 353 97287 110 11 10 233 chain 110315 chr3 198022430 + 192506638 192507961 LTR12C 1709 + 0 1709 34119 464 4 3 6 0 1 176 0 278 181 11 8 7 0 2 20 0 3 75 0 4 170 0 102 209 chain 16419 chr3 198022430 + 192513878 192514104 L1PA7 6471 + 6210 6454 137154 132 0 19 22 18 17 54 chain 2660 chr3 198022430 + 192556044 192556154 MLT1F1 559 - 354 465 230907 24 67 68 19 chain 3313 chr3 198022430 + 192572852 192572890 Tigger1 2417 + 2184 2222 218728 38 chain 22887 chr3 198022430 + 192603774 192604038 AluSg7 307 - 34 299 116155 146 0 1 118 chain 26517 chr3 198022430 + 192648801 192649119 AluYb8 318 + 0 313 97984 63 2 0 244 3 0 6 chain 55110 chr3 198022430 + 192656259 192656976 LTR12 884 - 0 883 55637 169 4 107 208 0 22 40 1 2 219 0 41 51 1 0 24 chain 481319 chr3 198022430 + 192678094 192683431 L1PA3long 6157 - 1 6148 7678 265 1 0 495 1 0 390 0 680 3077 0 1 97 0 2 245 9 137 612 1 2 144 chain 415709 chr3 198022430 + 192683628 192688508 L1PA6 6164 - 2 4857 9650 6 4 0 841 1 0 1014 19 10 323 1 0 27 5 6 7 8 0 229 2 0 428 1 0 54 1 0 222 0 1 1687 chain 24115 chr3 198022430 + 192698893 192699186 AluSp 311 + 4 298 109664 43 6 7 244 chain 2493 chr3 198022430 + 192713531 192713648 LTR7 482 + 86 285 233190 15 15 14 17 49 132 21 chain 293922 chr3 198022430 + 192713847 192717513 HERVH-int 3825 + 0 3825 13771 530 6 1 39 1 0 9 2 1 24 28 0 27 29 25 37 5 4 82 1 0 59 2 5 386 16 1 199 9 0 29 0 2 10 1 0 26 0 4 279 0 1 517 0 1 771 10 12 39 8 218 257 6 8 222 chain 25104 chr3 198022430 + 192718772 192719177 LTR7 482 + 0 482 104264 69 8 46 109 8 40 21 1 0 4 5 6 41 0 4 14 2 1 27 0 2 31 16 18 49 chain 346583 chr3 198022430 + 192720661 192725221 L1PB1 5432 - 41 4656 11707 21 1 0 24 2 0 12 14 11 14 15 6 7 3 0 15 1 0 44 1 0 16 2 1 50 3 1 12 15 10 9 1 0 20 4 1 12 1 2 218 2 80 34 5 6 143 0 1 24 0 1 98 12 13 179 0 1 106 0 1 237 0 1 233 1 7 52 4 0 814 0 1 17 6 0 558 10 11 260 32 32 105 2 1 283 0 1 19 7 6 4 0 1 134 2 0 5 1 7 14 1 0 48 1 2 71 1 0 366 0 1 5 1 0 126 chain 17063 chr3 198022430 + 192725227 192725474 L1P4 1494 - 966 1219 135418 182 6 9 10 10 13 39 chain 2947 chr3 198022430 + 192734056 192734087 U6 107 - 76 107 226144 31 chain 42545 chr3 198022430 + 192736371 192736921 MLT2A2 560 + 0 560 65968 180 1 0 217 5 16 147 chain 28722 chr3 198022430 + 192740651 192740952 AluYa5 310 - 9 310 90236 301 chain 19618 chr3 198022430 + 192754214 192754427 AluSp 311 + 69 282 128337 213 chain 42938 chr3 198022430 + 192755478 192756000 L1PA7 6471 - 5 528 65492 100 1 2 48 1 0 108 1 2 263 chain 41686 chr3 198022430 + 192765113 192765650 MLT2A2 560 + 0 560 67044 84 0 11 98 0 1 66 5 6 45 1 0 88 3 14 147 chain 102734 chr3 198022430 + 192787746 192788889 L1PA5 6144 - 711 1854 36070 1143 chain 64152 chr3 198022430 + 192788890 192789595 L1PA5 6144 + 5424 6131 50939 386 0 1 159 0 1 160 chain 15403 chr3 198022430 + 192804109 192804287 L1PA5 6144 - 2 181 140192 152 0 1 26 chain 4932 chr3 198022430 + 192827466 192827556 L1MA4 2864 - 52 134 195903 42 7 5 27 6 0 8 chain 17718 chr3 198022430 + 192846787 192847074 L1PA8 5853 - 0 287 133649 93 1 0 8 13 12 18 1 7 26 22 20 61 2 0 42 chain 17401 chr3 198022430 + 192867564 192867799 L1PA6 6164 + 5934 6160 134507 69 8 1 150 2 0 6 chain 54976 chr3 198022430 + 192880271 192881029 MER4E 760 + 0 760 55718 17 5 0 134 12 15 56 3 0 47 0 1 48 1 9 34 8 0 59 5 6 20 0 3 274 0 2 6 2 0 5 0 2 22 chain 516966 chr3 198022430 + 192897180 192903653 L1PA6 6164 + 0 6145 5486 567 1 0 423 8 0 441 0 1 895 3 0 102 1 0 596 2 0 164 0 1 26 2 1 43 0 3 297 0 1 669 6 8 71 0 1 243 0 6 154 8 1 552 0 4 43 1 5 306 312 0 85 4 0 81 17 1 14 4 6 164 0 1 46 0 1 122 chain 354468 chr3 198022430 + 192914987 192919267 L1PA7 6471 - 7 4302 11491 143 7 0 7 0 7 307 0 2 206 11 8 114 0 1 54 0 1 1110 0 1 593 0 1 297 1 0 52 9 13 122 1 7 702 0 1 194 0 2 172 22 21 4 0 1 152 chain 19129 chr3 198022430 + 192937531 192937923 L1PB1 5432 + 5053 5409 129747 50 6 0 11 1 0 24 1 0 8 1 0 8 7 3 10 2 0 53 3 2 10 5 4 45 1 0 14 32 22 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 17073 chr3 198022430 + 192951999 192952201 LTR3 431 - 229 431 135396 202 chain 29169 chr3 198022430 + 192955537 192955844 AluYk11 308 - 1 308 88207 307 chain 26199 chr3 198022430 + 192964976 192965412 MER61D 487 + 0 487 99209 145 0 60 28 7 8 28 36 29 15 6 7 9 5 3 73 2 1 65 2 1 15 chain 44003 chr3 198022430 + 192975405 192975954 MLT2A2 560 + 1 560 64203 179 1 0 222 0 11 147 chain 15605 chr3 198022430 + 193034605 193034807 L1MB1 2102 + 1046 1248 139564 202 chain 281766 chr3 198022430 + 193054043 193057219 L1PA5 6144 - 15 3197 14546 257 0 1 1020 0 7 186 1 0 983 1 0 728 chain 21040 chr3 198022430 + 193103450 193103684 AluSp 311 - 24 258 123763 234 chain 23706 chr3 198022430 + 193117365 193117656 AluY 311 + 10 304 111998 122 0 1 18 3 5 148 chain 88892 chr3 198022430 + 193130832 193131938 MER11A 1151 + 0 1151 40048 294 0 11 83 0 1 163 3 1 122 1 0 125 7 6 56 3 0 6 0 35 126 1 2 76 0 4 40 chain 160537 chr3 198022430 + 193144908 193146734 L1PA5 6144 + 4295 6138 23263 52 0 4 149 0 1 265 0 12 1360 chain 10334 chr3 198022430 + 193168819 193168947 LTR32 486 + 333 461 158965 128 chain 221364 chr3 198022430 + 193195940 193199021 L1PB1 5432 + 2344 5392 17791 156 5 1 252 18 26 63 2 0 364 0 1 518 6 7 73 13 15 385 0 3 61 0 1 34 0 1 116 0 1 23 1 0 4 34 20 159 3 0 215 1 2 258 2 3 6 3 0 26 0 2 4 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 41 48 35 14 3 1 5 1 0 14 2 0 24 1 0 22 chain 28824 chr3 198022430 + 193224375 193224750 THE1C 375 + 0 375 89787 180 6 7 163 1 0 25 chain 2811 chr3 198022430 + 193243959 193243989 L1PA8 5853 - 425 455 228597 30 chain 29189 chr3 198022430 + 193243989 193244408 L1PA8 5853 + 5446 5853 88106 118 1 0 46 2 0 65 22 15 45 7 6 19 2 1 92 chain 10194 chr3 198022430 + 193245488 193245614 THE1D 372 + 247 372 159657 69 1 0 56 chain 5052 chr3 198022430 + 193257343 193257406 LTR47A 437 + 302 365 194617 63 chain 4885 chr3 198022430 + 193292917 193292993 MLT1H1 527 + 448 525 196432 45 0 5 6 6 2 19 chain 30183 chr3 198022430 + 193294041 193294359 AluYb8 318 - 0 318 84243 318 chain 8610 chr3 198022430 + 193303270 193303386 MER30 238 + 120 238 167671 6 4 0 33 1 7 72 chain 427177 chr3 198022430 + 193324059 193328966 L1PA5 6144 - 2 6144 9366 913 9 10 213 1 3 265 0 3 46 0 1 369 0 1060 1159 0 166 698 0 1 54 5 6 129 2 1 4 0 1 1040 chain 7728 chr3 198022430 + 193341994 193342088 HY1 111 + 17 111 172723 94 chain 24184 chr3 198022430 + 193346712 193346993 AluSp 311 - 22 303 109301 281 chain 14465 chr3 198022430 + 193396818 193397013 L1PA8A 6298 + 6079 6284 143004 134 5 11 37 1 5 18 chain 20358 chr3 198022430 + 193456717 193456952 L1PA4 6152 + 5910 6152 126040 98 0 7 137 chain 3015 chr3 198022430 + 193464138 193464172 MIR 256 - 120 154 224723 34 chain 6173 chr3 198022430 + 193476928 193477002 THE1D 372 - 295 371 183786 19 0 2 55 chain 13286 chr3 198022430 + 193523000 193523151 L1PA5 6144 + 5993 6144 147144 151 chain 4625 chr3 198022430 + 193538055 193538151 L1ME1 1623 + 133 228 199348 18 27 26 51 chain 13195 chr3 198022430 + 193546910 193547121 MER30 238 + 0 238 147486 17 1 19 56 17 27 80 3 0 12 0 2 25 chain 24241 chr3 198022430 + 193562992 193563311 THE1C 375 + 0 323 108989 185 8 9 26 0 3 100 chain 8052 chr3 198022430 + 193582773 193582971 L1PB1 5432 + 5251 5430 170739 22 8 11 11 24 13 17 2 0 7 1 0 14 2 0 23 3 2 22 1 0 11 2 0 18 1 0 4 1 0 4 chain 16868 chr3 198022430 + 193606341 193606563 L1PA8 5853 + 5629 5849 135920 49 2 1 81 1 0 89 chain 452124 chr3 198022430 + 193640754 193646139 HERVL-int 5654 + 265 5654 8692 637 8 0 652 2 3 1202 6 7 282 5 6 206 8 13 673 0 1 17 0 1 128 0 1 122 9 17 469 5 1 657 4 0 70 0 1 223 chain 13107 chr3 198022430 + 193688234 193688380 L1PA5 6144 + 5990 6135 147817 6 1 0 139 chain 3558 chr3 198022430 + 193700766 193700806 MIR 256 + 79 119 214353 40 chain 136696 chr3 198022430 + 193783871 193785717 L1MA2 4263 + 1437 3443 26693 11 0 167 153 3 4 121 0 1 52 1 0 16 2 1 180 2 0 102 3 0 274 0 1 121 12 11 116 1 0 137 8 9 149 2 0 307 1 0 15 0 1 57 chain 21659 chr3 198022430 + 193786454 193786724 AluSp 311 - 16 301 121545 45 0 15 225 chain 23093 chr3 198022430 + 193844090 193844426 L1PA8 5853 - 0 329 115176 93 1 0 18 10 9 45 1 0 9 2 1 69 3 1 46 1 0 38 chain 3405 chr3 198022430 + 193894619 193894684 UCON29 292 + 224 288 217000 14 9 8 42 chain 39016 chr3 198022430 + 193907796 193908230 L1PA3long 6157 - 0 438 70724 338 0 1 31 0 3 65 chain 5099 chr3 198022430 + 193961912 193962157 L1MC1 2226 + 1972 2184 194090 8 3 0 15 2 0 4 0 1 36 154 125 23 chain 59694 chr3 198022430 + 194060471 194061234 MER4E 760 - 3 759 52994 222 9 0 150 0 4 10 4 0 33 0 1 9 1 0 33 0 1 163 5 6 124 chain 20717 chr3 198022430 + 194114565 194114821 L1PA6 6164 - 2 260 124905 9 0 1 154 7 8 86 chain 69798 chr3 198022430 + 194121171 194121918 SVA_E 1901 + 978 1901 48471 124 0 176 623 chain 22866 chr3 198022430 + 194128750 194129029 AluSc 308 - 12 288 116251 266 3 0 10 chain 4148 chr3 198022430 + 194130486 194130533 MER20 218 - 141 188 205262 47 chain 29505 chr3 198022430 + 194153958 194154271 AluYb8 318 - 5 318 86619 313 chain 29479 chr3 198022430 + 194193322 194193719 L1PA16 3655 + 3188 3578 86717 12 2 1 89 2 0 178 0 1 6 4 0 89 1 0 14 chain 3624 chr3 198022430 + 194213487 194213541 MER2 342 - 127 188 213253 35 1 8 18 chain 12751 chr3 198022430 + 194217364 194217536 MER58A 224 + 41 221 149250 15 1 7 44 0 2 112 chain 126790 chr3 198022430 + 194240024 194241593 THE1B-int 1605 + 0 1597 28861 74 1 0 356 1 26 29 1 2 195 1 0 254 0 3 178 2 1 4 0 2 473 chain 19700 chr3 198022430 + 194247381 194247667 AluSx 319 + 11 294 128100 5 3 0 108 0 1 126 27 26 17 chain 3816 chr3 198022430 + 194254231 194254293 U6 107 - 0 63 210142 13 7 8 42 chain 3044 chr3 198022430 + 194267390 194267424 L1MC1 2226 - 519 553 224119 34 chain 20023 chr3 198022430 + 194289407 194289645 AluSp 311 + 58 296 127070 238 chain 24532 chr3 198022430 + 194300744 194301028 AluSp 311 - 16 300 107364 284 chain 28658 chr3 198022430 + 194312665 194312972 AluYb8 318 + 0 307 90495 307 chain 26647 chr3 198022430 + 194326105 194326452 THE1B 368 - 0 368 97490 49 6 14 63 1 0 73 1 0 114 0 15 40 chain 3430 chr3 198022430 + 194356897 194356937 MADE1 96 - 5 45 216561 40 chain 28654 chr3 198022430 + 194364809 194365115 AluYb8 318 + 0 306 90508 306 chain 132561 chr3 198022430 + 194376419 194377887 L1PA4 6152 + 4679 6151 27512 619 0 4 849 chain 24964 chr3 198022430 + 194410885 194411172 AluSp 311 - 13 300 104984 287 chain 22912 chr3 198022430 + 194460820 194461104 AluSc5 308 + 9 287 116052 117 6 0 161 chain 2866 chr3 198022430 + 194537610 194537641 LTR64 526 - 21 52 227566 31 chain 48323 chr3 198022430 + 194561172 194561842 LTR12D 1347 + 403 1347 60227 133 25 31 56 0 1 28 2 18 18 0 18 220 0 200 84 0 33 104 chain 13617 chr3 198022430 + 194569944 194570246 MER51B 395 - 8 395 145911 59 0 4 15 3 15 47 3 2 10 26 25 16 31 48 43 0 6 6 13 61 30 chain 29006 chr3 198022430 + 194614733 194615040 AluYa5 310 - 3 310 88958 307 chain 276278 chr3 198022430 + 194616270 194620087 L1PB2 3958 - 124 3888 14857 59 2 1 17 4 0 6 18 20 50 1 0 64 1 0 24 4 6 42 1 0 94 17 12 65 5 0 13 1 0 54 2 0 22 0 1 360 1 0 443 2 0 50 8 14 367 2 1 5 0 1 184 0 1 5 1 0 14 24 8 70 2 0 154 0 1 31 2 0 92 0 1 194 22 1 35 9 0 140 1 0 131 1 2 124 5 3 5 0 2 14 0 2 127 0 6 150 0 8 74 0 11 93 0 2 66 9 14 49 3 0 51 1 0 3 9 0 8 1 0 29 2 0 30 0 8 18 18 0 12 chain 55081 chr3 198022430 + 194634595 194635241 L1PA7 6471 + 5820 6470 55658 57 0 1 423 1 2 153 1 3 11 chain 43254 chr3 198022430 + 194642630 194643500 MER41A 554 + 0 554 65115 185 318 8 61 15 9 291 chain 11728 chr3 198022430 + 194674554 194674724 MLT2A1 477 - 0 204 153356 42 6 0 7 5 45 110 chain 18477 chr3 198022430 + 194729115 194729340 L1PA4 6152 + 5900 6152 131568 147 7 34 71 chain 36862 chr3 198022430 + 194730195 194730656 LTR2 463 - 0 463 73710 251 0 1 77 4 5 129 chain 54083 chr3 198022430 + 194758542 194759400 L1PB2 3958 - 129 959 56305 54 1 0 13 4 6 7 2 0 67 9 8 32 0 1 24 1 0 143 4 1 22 17 12 42 44 34 32 0 2 22 5 3 16 0 1 80 10 6 78 10 4 21 0 1 98 chain 72395 chr3 198022430 + 194771480 194772627 L1PREC2 3366 - 327 1396 47306 24 12 10 34 22 8 11 4 0 4 0 1 25 2 0 16 6 1 17 27 21 10 7 1 5 0 2 13 18 5 24 2 1 54 2 0 5 1 0 182 27 0 362 0 3 107 2 0 85 1 2 36 chain 550418 chr3 198022430 + 194808401 194814422 L1PA2 6032 + 3 6032 1389 71 0 1 156 5 1 132 0 1 380 0 1 7 11 19 2126 0 1 3133 chain 10047 chr3 198022430 + 194935515 194935622 U6 107 + 0 107 160332 107 chain 407654 chr3 198022430 + 194935622 194940038 L1PA2 6032 + 1586 6013 9860 1238 0 11 3178 chain 27003 chr3 198022430 + 194946385 194946754 THE1C 375 + 0 375 96272 108 11 10 32 0 1 96 0 3 45 0 4 51 1 0 25 chain 36531 chr3 198022430 + 194963683 194964099 L1PA5 6144 + 5728 6144 74198 416 chain 4788 chr3 198022430 + 194969673 194969729 THE1B 368 + 312 368 197486 56 chain 23511 chr3 198022430 + 195010257 195010552 AluY 311 + 10 302 113064 114 0 2 7 8 1 129 0 2 37 chain 24418 chr3 198022430 + 195015033 195015337 AluSq4 311 + 0 308 107981 19 0 7 100 0 1 165 4 0 16 chain 21588 chr3 198022430 + 195053301 195053663 THE1D 372 + 0 357 121816 13 0 2 17 1 0 23 9 0 10 24 27 28 1 0 64 16 18 15 8 7 133 chain 4379 chr3 198022430 + 195070888 195071075 L1ME1 1623 + 288 478 202200 21 69 75 32 20 19 23 10 8 12 chain 22943 chr3 198022430 + 195078462 195078839 THE1D 372 - 1 372 115896 147 8 7 15 16 18 39 11 12 45 5 9 5 3 0 19 9 0 55 chain 25001 chr3 198022430 + 195107184 195107527 L1PA8 5853 + 5507 5853 104779 55 1 0 47 3 1 71 1 0 7 1 3 37 10 16 16 1 0 93 chain 6301 chr3 198022430 + 195148265 195148356 Tigger3c 601 - 149 243 182796 56 1 0 9 1 5 24 chain 24472 chr3 198022430 + 195169438 195169724 AluY 311 + 0 286 107690 4 1 0 128 0 1 153 chain 5050 chr3 198022430 + 195180141 195180197 U6 107 + 0 56 194631 56 chain 8059 chr3 198022430 + 195185287 195185388 MER30 238 + 140 238 170702 54 3 0 44 chain 22592 chr3 198022430 + 195190034 195190376 THE1B 368 + 0 368 117621 44 0 15 42 0 2 69 1 0 26 45 55 115 chain 25065 chr3 198022430 + 195194103 195194406 AluYb8 318 - 11 317 104484 19 3 5 156 0 1 125 chain 20860 chr3 198022430 + 195235967 195236246 AluY 311 + 13 300 124428 57 0 3 60 13 17 64 4 5 81 chain 3386 chr3 198022430 + 195288947 195288989 MLT1D 503 + 124 164 217355 32 2 0 8 chain 20949 chr3 198022430 + 195308771 195309069 AluSp 311 + 8 286 124109 25 0 6 93 1 0 35 30 5 114 chain 78324 chr3 198022430 + 195316344 195317381 MER11A 1151 - 0 1151 44363 167 0 1 16 1 0 30 3 4 12 0 1 36 18 0 22 8 41 128 9 10 144 0 1 94 0 1 149 4 0 66 1 0 74 10 109 45 chain 15928 chr3 198022430 + 195320197 195320544 MER57E1 380 - 2 380 138588 68 13 15 29 5 6 7 1 0 52 87 115 17 0 1 68 chain 119700 chr3 198022430 + 195326027 195327382 SVA_C 1631 - 17 1609 31147 584 0 215 206 0 40 517 18 0 30 chain 174950 chr3 198022430 + 195334285 195338450 MER4-int 2692 + 1 2692 21468 12 1 0 23 2 0 63 1 0 19 4 0 64 7 8 122 21 6 66 0 2 122 0 3 185 0 2 70 0 1 129 1817 324 160 0 16 55 1 0 144 3 8 151 8 25 84 1 0 148 1 0 257 2 1 11 0 2 45 0 1 143 6 10 4 1 0 76 18 11 118 chain 31045 chr3 198022430 + 195335206 195335641 MER4A1 472 + 0 458 82445 30 1 0 67 16 18 108 30 52 183 chain 33528 chr3 198022430 + 195338457 195338905 MER4A1 472 + 0 472 78353 12 3 5 13 1 0 200 0 22 106 1 2 112 chain 3482 chr3 198022430 + 195347355 195347400 MIR3 191 + 75 120 215634 45 chain 86188 chr3 198022430 + 195380391 195381379 LTR13 1007 + 18 1007 41081 345 0 14 52 15 1 429 0 1 147 chain 34194 chr3 198022430 + 195406407 195406869 MER9a3 513 + 7 513 77358 11 0 2 54 0 1 104 4 5 90 3 21 13 8 29 97 0 1 78 chain 79186 chr3 198022430 + 195421997 195423248 L1PA7 6471 - 10 963 43955 446 310 0 311 1 4 26 0 5 48 1 5 108 chain 18189 chr3 198022430 + 195423254 195423494 L1PA7 6471 + 5253 5494 132360 30 7 8 203 chain 9592 chr3 198022430 + 195434646 195434769 L1MB7 1623 - 854 977 162630 123 chain 4035 chr3 198022430 + 195443713 195443757 MER50 708 - 138 182 206846 44 chain 3482 chr3 198022430 + 195453698 195453743 MIR3 191 + 75 120 215633 45 chain 84746 chr3 198022430 + 195454969 195455963 LTR5A 1029 - 0 1026 41618 643 0 1 215 5 32 38 0 2 37 0 2 56 chain 13367 chr3 198022430 + 195468112 195468268 AluYc 301 + 138 294 146823 156 chain 122067 chr3 198022430 + 195518377 195520002 L1PA8 5853 + 4042 5853 30361 5 0 1 98 0 158 8 0 6 94 6 13 443 0 1 50 0 2 63 0 4 21 2 0 513 1 0 42 1 0 44 2 0 73 1 0 7 10 12 16 32 44 93 chain 26966 chr3 198022430 + 195567606 195567918 AluSq10 312 + 0 312 96386 312 chain 34352 chr3 198022430 + 195575617 195576074 MER41A 554 - 92 554 77126 38 24 27 10 0 2 385 chain 10848 chr3 198022430 + 195649260 195649381 L1PA4 6152 + 6030 6151 156792 121 chain 75917 chr3 198022430 + 195654395 195655363 LTR5_Hs 974 - 0 974 45529 103 20 18 19 8 15 164 1 0 187 0 1 177 0 1 289 chain 25882 chr3 198022430 + 195657330 195657676 L1PA8 5853 - 0 348 100518 93 1 0 19 2 1 61 2 1 29 0 8 33 2 0 44 1 0 59 chain 9090 chr3 198022430 + 195660226 195660385 LTR2C 499 + 338 499 165120 38 3 0 6 25 28 28 1 3 58 chain 3792 chr3 198022430 + 195687382 195687462 MADE1 96 - 0 96 210500 21 26 42 33 chain 33978 chr3 198022430 + 195696052 195696502 MER9a3 513 - 0 506 77647 79 0 1 96 8 29 16 0 18 94 0 1 104 0 1 30 0 12 17 0 2 6 chain 8293 chr3 198022430 + 195718242 195718342 AluSp 311 - 26 126 169441 100 chain 86901 chr3 198022430 + 195720722 195721719 LTR13 1007 - 0 989 40824 147 0 1 429 12 3 409 chain 106733 chr3 198022430 + 195744266 195745539 L1PA7 6471 + 5178 6455 35051 436 0 3 473 0 1 206 16 14 128 0 2 14 chain 72407 chr3 198022430 + 195748801 195749759 LTR13 1007 + 0 956 47302 72 5 0 9 0 3 297 4 5 263 0 1 9 22 6 20 0 3 11 0 9 54 0 1 10 11 12 171 chain 4149 chr3 198022430 + 195756263 195756311 L1MA3 4352 + 1134 1182 205249 48 chain 35714 chr3 198022430 + 195783965 195784410 LTR2 463 + 2 463 75253 80 4 17 13 3 0 15 0 3 81 0 1 101 0 2 148 chain 14752 chr3 198022430 + 195786485 195786648 L1PA2 6032 - 2 165 142092 163 chain 23737 chr3 198022430 + 195791846 195792151 AluSp 311 + 0 300 111851 77 14 9 214 chain 3102 chr3 198022430 + 195799689 195799722 U7 62 + 0 33 222878 33 chain 21030 chr3 198022430 + 195806197 195806490 AluSp 311 + 0 287 123809 36 3 0 59 1 0 24 3 1 85 3 1 70 0 2 9 chain 24154 chr3 198022430 + 195836488 195836798 AluY 311 + 11 305 109455 122 22 6 166 chain 3674 chr3 198022430 + 195844039 195844077 MER57B1 401 - 71 109 212323 38 chain 13951 chr3 198022430 + 195850868 195851062 LTR8 732 + 537 732 144747 39 10 11 145 chain 8660 chr3 198022430 + 195880250 195880421 L1PB1 5432 - 12 163 167424 16 1 0 13 1 0 21 1 0 24 2 0 15 7 4 25 10 0 6 1 0 16 1 0 11 chain 18736 chr3 198022430 + 195881856 195882089 L1PBa 3878 - 1074 1306 130864 93 5 0 118 1 5 16 chain 7304 chr3 198022430 + 195889751 195889867 LTR34 700 - 0 121 175411 28 12 14 16 0 1 22 0 2 38 chain 118179 chr3 198022430 + 195970373 195971963 SVA_C 1631 + 0 1616 31736 7 1 0 6 0 3 553 0 40 50 80 0 67 2 0 32 1 44 28 156 0 12 1 180 594 chain 2467 chr3 198022430 + 195970999 195971030 SVA_C 1631 + 436 467 233505 31 chain 12008 chr3 198022430 + 195971200 195971356 SVA_C 1631 + 557 790 86698 153 0 77 3 chain 5612 chr3 198022430 + 195992521 195992586 BC200 147 + 5 70 188960 65 chain 8004 chr3 198022430 + 195999696 195999933 MER52A 1651 - 1 237 171031 83 126 125 28 chain 3844 chr3 198022430 + 196002131 196002208 L1MA7 2200 + 1871 1947 209724 26 3 4 14 10 8 24 chain 23910 chr3 198022430 + 196071185 196071489 AluSc8 310 + 2 307 110865 40 0 1 89 0 3 63 7 4 105 chain 23639 chr3 198022430 + 196086502 196086789 AluSx1 309 + 0 295 112366 24 0 9 156 1 0 106 chain 10319 chr3 198022430 + 196090369 196090518 Tigger1 2417 + 492 646 159043 71 8 12 7 0 1 63 chain 9096 chr3 198022430 + 196106734 196106846 MER41B 635 - 0 112 165090 112 chain 527560 chr3 198022430 + 196107379 196115322 L1PA6 6164 + 0 6158 4445 195 0 1 4 5 0 39 0 2 274 5 7 45 1 0 231 1 18 1011 0 2 506 320 0 139 0 15 30 3 0 180 1 0 490 0 1 1001 1415 0 175 0 4 188 0 1 232 76 0 585 5 1 634 8 0 48 0 3 96 chain 119151 chr3 198022430 + 196111877 196113264 SVA_B 1603 + 0 1603 31359 19 0 25 406 0 76 307 4 87 55 3 35 593 chain 24413 chr3 198022430 + 196143905 196144187 AluY 311 + 3 287 108010 129 0 1 78 0 1 75 chain 5608 chr3 198022430 + 196148264 196148343 MER5C 305 + 91 168 189006 68 1 0 5 1 0 4 chain 3007 chr3 198022430 + 196154173 196154206 U6 107 + 0 33 224883 33 chain 24116 chr3 198022430 + 196201315 196201610 AluSp 311 - 9 303 109657 182 2 1 111 chain 79243 chr3 198022430 + 196247635 196248603 LTR13A 966 + 0 966 43935 126 1 2 156 1 0 3 1 0 98 1 0 581 chain 6355 chr3 198022430 + 196262308 196262454 L1MD1 2063 - 160 276 182341 34 44 18 30 4 0 34 chain 91652 chr3 198022430 + 196269452 196270485 SVA_D 2077 - 0 1648 39069 7 2 0 617 0 537 36 0 40 206 0 40 165 chain 22105 chr3 198022430 + 196274327 196275167 THE1B 368 + 0 368 119759 12 1 3 29 3 21 101 498 6 98 0 1 16 36 35 46 chain 117266 chr3 198022430 + 196275167 196277031 THE1B-int 1605 + 0 1594 32035 23 6 11 391 341 56 87 8 7 166 13 15 411 5 9 18 1 0 259 2 3 63 0 5 70 chain 22118 chr3 198022430 + 196297136 196297401 AluSp 311 - 14 305 119714 25 0 26 240 chain 10688 chr3 198022430 + 196305567 196305781 MER30 238 + 0 238 157462 18 42 49 40 4 0 11 10 28 44 0 3 45 chain 116694 chr3 198022430 + 196325075 196326471 LTR12C 1709 - 0 1709 32224 150 0 29 136 1 0 17 0 4 145 0 4 107 3 1 5 1 0 97 0 278 160 0 1 523 0 1 51 chain 34553 chr3 198022430 + 196346500 196346870 SVA_D 2077 - 15 385 76827 370 chain 5835 chr3 198022430 + 196357087 196357159 L1MB8 1703 - 192 264 186806 72 chain 3395 chr3 198022430 + 196369608 196369647 L1MB2 1706 + 1655 1694 217172 39 chain 12731 chr3 198022430 + 196396385 196396550 MER4E1 777 - 18 195 149328 64 1 13 100 chain 11485 chr3 198022430 + 196399304 196399512 L1MA3 4352 - 0 196 154356 21 10 7 10 1 0 20 7 6 6 1 0 24 2 0 23 4 0 79 chain 77704 chr3 198022430 + 196409935 196410963 MER11C 1089 - 26 1056 44655 143 1 0 54 0 1 127 0 1 34 10 13 118 40 26 161 1 0 64 0 4 62 0 9 213 chain 23087 chr3 198022430 + 196416218 196416478 AluY 311 + 38 299 115207 90 1 2 169 chain 22259 chr3 198022430 + 196468966 196469244 AluSp 311 - 7 300 119078 35 1 6 29 0 7 200 0 3 13 chain 12923 chr3 198022430 + 196478085 196479051 Tigger4b 360 + 1 360 148541 97 24 47 30 693 61 55 27 36 12 8 1 20 chain 32711 chr3 198022430 + 196483752 196484241 LTR10A 586 - 25 563 79670 12 0 1 34 0 1 4 8 6 169 1 0 51 1 2 69 9 10 61 1 0 17 4 25 22 4 32 22 chain 142576 chr3 198022430 + 196488023 196489546 SVA_F 1814 - 0 1804 25715 637 0 242 55 1 0 304 0 40 526 chain 70396 chr3 198022430 + 196511096 196511850 L1PA2 6032 - 0 754 48217 754 chain 9608 chr3 198022430 + 196511850 196511957 U6 107 - 0 107 162544 107 chain 22263 chr3 198022430 + 196512508 196512830 THE1B 368 - 0 368 119059 67 1 0 101 2 0 28 1 0 19 4 37 8 0 2 42 5 20 44 chain 23365 chr3 198022430 + 196554356 196554631 L1PA5 6144 + 5866 6143 113838 264 1 3 10 chain 4500 chr3 198022430 + 196570524 196570742 LTR82A 830 - 116 334 200782 34 118 119 27 20 19 19 chain 15408 chr3 198022430 + 196574217 196574514 HUERS-P3b-int 2065 + 1638 1926 140177 65 0 2 20 12 10 67 2 0 13 35 32 33 24 20 26 chain 23134 chr3 198022430 + 196579555 196579834 AluSz 310 + 4 286 114976 80 0 1 35 0 1 124 0 1 40 chain 20007 chr3 198022430 + 196579922 196580141 AluYf4 310 + 75 294 127122 219 chain 7159 chr3 198022430 + 196583887 196584348 L1PA15-16 3068 + 1784 2250 74867 78 1 0 32 6 13 204 1 0 139 chain 80688 chr3 198022430 + 196584389 196585425 MER11C 1089 - 26 1089 43311 68 0 1 128 0 1 15 14 16 96 0 1 38 1 0 4 1 5 17 0 1 117 8 9 160 1 0 65 0 4 67 0 1 91 0 13 145 chain 3929 chr3 198022430 + 196585954 196586207 L1PA15-16 3068 + 2419 2655 74867 21 0 7 12 67 65 26 1 0 4 10 9 5 1 0 11 1 0 4 1 0 16 57 40 16 chain 20003 chr3 198022430 + 196588766 196589031 LTR12F 595 - 0 270 127136 71 3 7 129 1 0 25 0 2 36 chain 20431 chr3 198022430 + 196601486 196601753 AluSp 311 + 17 295 125806 55 5 6 190 4 14 13 chain 15954 chr3 198022430 + 196634514 196634736 MER30 238 - 0 238 138505 48 3 0 65 4 17 16 0 6 86 chain 244619 chr3 198022430 + 196635189 196639541 L1PA8 5853 + 2569 5844 16523 214 323 0 87 2 1 37 1 0 22 7 11 10 0 3 80 11 9 260 1 0 83 0 3 48 1 0 214 1 2 41 0 2 41 1 7 165 0 3 353 323 0 159 2 3 151 0 4 251 7 15 156 4 9 56 405 32 56 18 17 199 0 1 35 5 11 95 2 3 46 1 0 44 2 0 71 1 0 14 1 0 47 2 1 11 92 0 11 1 0 81 chain 24692 chr3 198022430 + 196644898 196645189 AluY 311 + 0 296 106480 70 0 3 205 0 2 16 chain 74950 chr3 198022430 + 196670950 196671899 LTR5_Hs 974 + 0 974 46038 8 0 4 276 0 1 115 9 7 111 0 10 290 13 21 23 6 4 21 0 6 77 chain 20271 chr3 198022430 + 196683093 196683468 THE1B 368 - 17 368 126310 39 7 6 66 7 16 10 0 4 11 59 22 54 14 15 108 chain 100162 chr3 198022430 + 196700069 196701214 SVA_D 2077 + 7 2077 36729 26 13 12 13 1 3 43 0 27 411 0 40 105 0 858 514 1 0 18 chain 8585 chr3 198022430 + 196708253 196708549 L1MC1 2226 + 1767 2050 167814 60 161 151 17 2 0 51 1 0 4 chain 29481 chr3 198022430 + 196858455 196858763 AluYa5 310 - 2 310 86706 308 chain 117544 chr3 198022430 + 196872911 196874657 L1PB1 5432 + 3697 5404 31946 22 5 8 102 0 4 281 17 20 137 0 1 32 0 1 4 1 0 68 3 4 123 3 7 94 4 0 23 0 1 100 6 10 66 0 1 38 0 1 249 0 14 6 48 0 24 1 0 6 1 0 12 20 14 49 3 2 15 1 0 46 5 4 16 16 6 18 3 1 5 1 0 14 2 0 24 1 0 13 0 4 4 1 0 13 chain 9935 chr3 198022430 + 196883130 196883382 L1M4c 1769 + 1499 1747 160898 32 43 44 15 3 0 5 5 9 37 20 13 65 0 5 6 2 1 11 3 0 5 chain 3905 chr3 198022430 + 196900532 196900690 MER58A 224 - 0 172 208778 20 98 112 40 chain 24369 chr3 198022430 + 196938071 196938397 L1PREC2 3366 + 1629 1956 108271 56 14 13 92 0 1 102 0 1 62 chain 19702 chr3 198022430 + 197007026 197007476 L1MA4 2864 - 181 621 128088 10 3 0 47 0 6 37 1 0 4 0 5 58 0 1 11 102 83 49 52 54 20 1 0 55 chain 21073 chr3 198022430 + 197027872 197028177 AluSg7 307 + 0 307 123647 29 2 1 95 47 50 132 chain 15038 chr3 198022430 + 197060200 197060389 L1PA7 6471 - 2 192 141209 11 0 1 141 2 0 6 0 2 29 chain 24621 chr3 198022430 + 197086189 197086518 THE1B 368 + 0 368 106884 107 0 43 13 3 1 4 1 0 126 2 1 73 chain 23170 chr3 198022430 + 197125872 197126180 AluSp 311 + 0 305 114813 132 22 19 154 chain 9732 chr3 198022430 + 197127321 197127445 MER4A1_ 611 + 486 611 161936 111 0 2 6 1 0 6 chain 545294 chr3 198022430 + 197136799 197142928 L1PA4 6152 + 15 6151 2036 445 6 0 120 1 0 656 2 0 1084 1 0 14 0 1 77 0 1 347 1 11 442 0 1 1091 1 0 42 0 4 950 0 1 849 chain 23924 chr3 198022430 + 197184728 197185033 AluSp 311 + 10 302 110786 59 13 0 233 chain 9631 chr3 198022430 + 197201592 197201732 THE1D 372 + 224 369 162434 75 9 13 12 0 1 44 chain 2908 chr3 198022430 + 197221707 197221754 MLT1N2 510 + 427 474 226905 16 1 2 9 1 0 20 chain 20983 chr3 198022430 + 197278240 197278557 L1MA2 4263 - 150 457 123979 9 1 0 17 1 2 16 2 1 10 7 0 91 5 4 5 1 0 152 chain 25178 chr3 198022430 + 197283767 197284205 MER4A1 472 + 1 472 103858 85 0 1 23 0 1 30 0 1 71 11 32 93 73 76 24 7 13 21 chain 48565 chr3 198022430 + 197286994 197287570 LTR10C 591 + 0 591 60064 45 0 1 72 0 1 26 0 8 383 0 5 50 chain 189680 chr3 198022430 + 197291218 197294122 MER4-int 2692 + 74 2692 20085 25 2 0 26 3 0 224 12 32 111 1 3 148 323 0 42 10 10 8 0 2 73 0 13 116 0 1 199 5 6 10 5 8 62 0 3 115 2 1 17 2 0 27 0 4 113 1 3 31 6 1 89 0 5 178 1 0 110 0 2 59 2 0 68 1 0 118 0 1 117 12 0 19 2 0 6 0 4 76 0 5 24 1 0 291 0 1 11 chain 32063 chr3 198022430 + 197294131 197294590 MER4A1 472 + 1 470 80747 44 0 1 179 41 51 32 0 1 133 2 0 28 chain 118576 chr3 198022430 + 197296710 197298268 THE1B-int 1605 + 0 1605 31591 25 3 0 5 12 15 77 2 1 115 0 3 191 0 25 42 0 3 78 18 24 39 1 0 634 0 12 316 chain 53359 chr3 198022430 + 197298797 197299465 PABL_B 668 + 0 668 56798 112 0 1 165 1 0 6 0 1 163 4 0 108 0 3 109 chain 34049 chr3 198022430 + 197301199 197301633 MER4A1 472 - 17 472 77550 180 7 28 247 chain 41185 chr3 198022430 + 197302782 197303346 MER41A 554 - 0 554 67661 118 11 10 45 0 3 5 21 5 237 0 3 35 0 1 92 chain 133671 chr3 198022430 + 197328596 197330107 SVA_D 2077 - 0 2074 27285 10 11 0 628 0 1 34 0 488 25 0 40 201 0 40 401 1 0 183 1 7 16 chain 23816 chr3 198022430 + 197336222 197336537 L1MA3 4352 + 2177 2489 111388 63 1 0 73 1 0 62 1 0 114 chain 30884 chr3 198022430 + 197340871 197341296 MER4A1 472 - 0 447 82714 197 37 59 191 chain 201554 chr3 198022430 + 197341331 197344334 MER4-int 2692 - 1 2691 19102 102 4 0 6 4 8 88 1 0 4 6 10 140 3 4 42 1 4 12 2 1 257 1 0 140 9 8 396 0 1 10 2 0 224 311 0 38 0 3 21 0 1 77 0 7 213 0 4 73 0 13 65 1 0 17 2 1 4 0 1 37 4 0 106 0 9 164 3 12 37 0 7 12 0 1 35 50 0 161 4 0 16 10 8 21 0 5 29 2 0 25 1 0 10 chain 6949 chr3 198022430 + 197355825 197355903 AluSp 311 - 26 104 177816 78 chain 86937 chr3 198022430 + 197358306 197359310 LTR13 1007 - 0 989 40811 61 3 0 86 0 1 429 14 1 411 chain 6516 chr3 198022430 + 197415353 197415431 LTR41 747 + 669 746 181113 72 1 0 5 chain 23756 chr3 198022430 + 197444031 197444325 AluY 311 + 8 293 111731 69 10 1 215 chain 23134 chr3 198022430 + 197457454 197457719 LTR14A 344 - 78 341 114979 48 2 0 215 chain 75780 chr3 198022430 + 197457867 197458734 SVA_D 2077 - 1 1227 45604 625 1 227 153 0 51 70 2 84 16 chain 3956 chr3 198022430 + 197525737 197525839 MER3 215 - 102 177 208029 34 41 15 20 1 0 6 chain 23625 chr3 198022430 + 197532786 197533081 AluSp 311 - 14 296 112438 8 13 0 274 chain 9799 chr3 198022430 + 197540031 197540165 L1MA3 4352 - 64 195 161599 6 1 0 23 2 0 102 chain 24665 chr3 198022430 + 197590894 197591195 AluSp 311 + 0 300 106638 70 1 0 230 chain 19747 chr3 198022430 + 197625398 197625730 THE1C 375 - 0 375 127966 25 1 0 104 11 46 18 0 3 61 11 12 13 22 23 17 0 6 34 2 0 13 chain 29590 chr3 198022430 + 197628681 197629554 L1M1 2793 + 494 1269 86232 5 1 0 10 1 0 13 3 0 11 1 0 7 1 0 14 2 0 9 3 0 7 1 0 9 150 86 30 227 201 6 1 0 93 9 8 90 0 2 24 0 4 57 4 5 84 chain 49219 chr3 198022430 + 197629563 197630235 L1MA3 4352 + 2586 3258 59575 58 1 0 77 5 6 50 10 14 121 8 0 8 10 18 107 7 2 181 0 1 29 chain 15194 chr3 198022430 + 197643665 197643882 MER30 238 - 0 238 140790 78 0 13 24 6 0 7 2 16 100 chain 29858 chr3 198022430 + 197654617 197654974 L1PA6 6164 + 5794 6151 85249 259 0 3 6 3 0 89 chain 89343 chr3 198022430 + 197694104 197695558 MER11A 1151 - 0 1151 39867 289 11 34 18 32 5 271 0 6 139 0 1 87 14 9 86 302 0 109 0 1 96 chain 22743 chr3 198022430 + 197695057 197695346 AluY 311 + 2 302 116853 123 4 1 75 0 14 87 chain 4761 chr3 198022430 + 197717845 197717904 MLT2D 439 - 0 58 197796 48 1 0 10 chain 8377 chr3 198022430 + 197721476 197721579 U6 107 + 3 106 168980 103 chain 65415 chr3 198022430 + 197737995 197738706 L1PA4 6152 - 0 711 50372 711 chain 20452 chr3 198022430 + 197738706 197738929 L1PA4 6152 + 5100 5323 125750 223 chain 13621 chr3 198022430 + 197772115 197772441 THE1B 368 - 0 350 145899 35 0 2 43 10 9 30 41 51 26 1 0 51 63 77 26 chain 9097 chr3 198022430 + 197772472 197772586 LTR8 732 + 41 155 165081 114 chain 4534 chr3 198022430 + 197775550 197775606 MSTA 426 - 330 386 200413 56 chain 74143 chr3 198022430 + 197777548 197778529 LTR13 1007 + 6 991 46436 67 2 0 183 0 1 6 0 2 10 2 1 105 4 5 242 2 1 65 5 9 248 25 25 15 chain 38549 chr3 198022430 + 197780621 197781053 L1PA4 6152 + 5709 6143 71367 160 0 1 131 0 1 141 chain 97419 chr3 198022430 + 197809030 197810102 L1PA3long 6157 + 5082 6157 37449 68 0 1 156 0 1 540 0 1 308 chain 7910 chr3 198022430 + 197811182 197811267 AluSp 311 + 226 311 171584 85 chain 19448 chr3 198022430 + 197816381 197816606 AluY 311 + 85 311 128826 47 0 1 178 chain 171197 chr3 198022430 + 197856789 197859415 L1PA7 6471 - 16 2369 21913 141 0 1 93 326 0 73 7 25 112 1 2 8 0 2 57 0 25 291 0 2 63 3 7 49 0 2 198 2 1 142 0 2 5 2 0 180 0 3 4 1 0 4 1 0 42 27 23 33 7 8 8 1 0 149 1 2 148 1 3 5 2 0 54 0 1 385 chain 48304 chr3 198022430 + 197877142 197877735 LTR10C 591 + 0 591 60238 15 0 5 489 8 0 60 1 2 20 chain 20692 chr3 198022430 + 197914051 197914334 AluSp 311 + 2 286 124991 51 12 14 166 7 6 47 chain 85442 chr3 198022430 + 197926548 197927611 MER11B 1079 - 0 1079 41369 11 5 4 294 8 2 384 0 1 50 0 17 86 0 5 225 chain 2734 chr3 198022430 + 197929051 197929081 MER21C 908 - 858 888 229694 30 chain 117492 chr4 191154276 + 14766 16120 L1PA4 6152 + 4809 6151 31969 368 12 10 705 1 0 110 1 0 77 8 0 72 chain 84984 chr4 191154276 + 19026 20027 LTR5B 1012 + 5 1012 41515 95 0 2 724 0 4 182 chain 166258 chr4 191154276 + 29957 31896 L1PA5 6144 + 4198 6144 22492 4 0 1 1072 0 4 11 1 0 67 2 1 28 0 3 421 0 1 170 1 6 8 5 0 149 chain 21613 chr4 191154276 + 35504 35823 L1PA14 3548 - 92 405 121719 41 1 0 33 7 5 34 5 1 10 1 0 161 1 3 25 chain 268622 chr4 191154276 + 37398 40541 L1P2 5180 - 1083 4222 15256 414 3 0 578 0 2 46 0 1 729 0 1 363 5 0 207 0 1 742 1 0 55 chain 37000 chr4 191154276 + 51619 52151 LTR77 607 + 0 529 73512 42 8 10 121 8 9 78 16 13 232 14 11 13 chain 2889 chr4 191154276 + 61569 61601 MER6C 202 + 13 45 227214 32 chain 29594 chr4 191154276 + 74368 74814 MER4A1 472 - 15 472 86225 53 12 20 34 14 14 203 24 25 6 0 2 100 chain 26542 chr4 191154276 + 80726 81075 L1PA8 5853 - 6 347 97872 87 1 0 19 6 5 48 3 0 9 1 0 15 1 2 52 2 0 48 1 0 56 chain 38137 chr4 191154276 + 122972 123479 LTR12F 595 - 0 595 71937 46 0 2 174 14 0 134 4 92 35 0 12 100 chain 4016 chr4 191154276 + 128658 128703 MER4A1 472 - 10 55 207139 45 chain 74979 chr4 191154276 + 145520 146488 LTR5_Hs 974 - 0 974 46022 103 20 18 19 8 15 163 1 0 188 6 7 171 0 1 289 chain 26157 chr4 191154276 + 156978 157259 AluYa5 310 - 14 292 99382 90 3 0 188 chain 532004 chr4 191154276 + 159639 165778 L1PA4 6152 - 0 6149 3960 71 8 0 77 1 8 239 0 1 455 1 0 283 0 1 334 0 1 432 1 0 60 0 1 248 0 1 309 2 1 114 1 0 735 0 2 492 0 4 1012 1 2 184 0 1 306 0 3 220 1 0 552 chain 178579 chr4 191154276 + 186646 188880 HERV17-int 4347 - 0 4335 21114 54 1 0 4 0 1 122 0 1 203 24 19 208 0 1672 420 0 1 155 0 3 12 1 2 167 0 1 154 14 15 368 0 430 42 0 1 153 1 0 26 2 0 35 2 1 50 1 0 15 chain 120288 chr4 191154276 + 196146 198046 THE1B-int 1605 + 1 1597 30945 293 9 9 79 0 1 44 20 42 100 0 2 732 3 7 177 333 0 110 chain 78280 chr4 191154276 + 201588 202551 LTR5_Hs 974 - 0 971 44383 191 12 14 109 0 1 197 0 4 446 0 1 8 chain 25072 chr4 191154276 + 203707 204002 AluYk4 311 + 0 291 104448 126 4 0 165 chain 9613 chr4 191154276 + 214140 214283 MER30B 195 - 8 157 162523 91 1 0 10 8 15 33 chain 9075 chr4 191154276 + 224645 224775 L1MA3 4352 - 2041 2175 165188 51 6 9 8 0 1 65 chain 75856 chr4 191154276 + 234988 235990 LTR5B 1012 + 3 1012 45568 125 1 14 198 1 0 19 0 1 5 11 9 115 1 0 94 0 1 252 5 1 175 chain 6844 chr4 191154276 + 235997 236178 HERVK-int 6823 + 6 177 178633 11 3 1 24 53 49 9 1 0 18 4 3 13 2 0 43 chain 5557 chr4 191154276 + 239380 239449 LTR5B 1012 - 930 998 189501 53 1 0 15 chain 79591 chr4 191154276 + 252918 253905 LTR13 1007 + 0 1007 43786 136 11 18 226 1 6 242 2 1 54 1 7 10 0 1 209 0 2 44 5 7 6 2 0 38 chain 25568 chr4 191154276 + 263968 264243 AluYa5 310 + 36 310 101883 96 1 0 178 chain 43781 chr4 191154276 + 272251 272873 LTR66 600 + 0 600 64474 45 0 3 43 0 14 261 71 0 49 2 0 23 0 17 14 0 16 13 0 1 101 chain 96593 chr4 191154276 + 294554 295662 L1PA5 6144 + 5028 6139 37670 263 0 4 116 1 0 580 7 0 8 0 7 133 chain 48743 chr4 191154276 + 296624 297180 LTR6B 557 + 0 557 59917 48 1 0 56 0 2 164 1 0 89 0 1 41 1 0 49 0 1 106 chain 19292 chr4 191154276 + 309548 309876 THE1B 368 - 12 363 129263 108 40 50 29 9 5 70 0 1 38 11 26 6 0 1 17 chain 69207 chr4 191154276 + 323362 324372 LTR13 1007 - 0 1007 48717 20 14 10 7 0 2 254 15 29 22 20 4 9 0 1 20 2 1 238 39 40 116 1 0 103 0 3 45 0 3 6 6 1 73 chain 8396 chr4 191154276 + 339199 339291 MER30B 195 - 8 100 168877 92 chain 250212 chr4 191154276 + 355177 358389 L1PA5 6144 - 0 2910 16237 11 0 7 130 5 7 1054 0 1 589 0 4 12 1 0 71 0 3 108 1 0 103 317 0 810 chain 39070 chr4 191154276 + 378128 378686 LTR77 607 + 0 549 70642 13 0 4 150 0 1 95 33 20 187 1 3 32 5 2 42 chain 29541 chr4 191154276 + 383626 384070 LTR2B 499 + 14 499 86447 40 0 11 4 1 0 42 54 85 110 0 1 10 1 0 182 chain 9444 chr4 191154276 + 388038 388222 MER30B 195 - 0 190 163343 111 54 60 19 chain 157580 chr4 191154276 + 388758 390572 SVA_D 2077 + 12 2077 23650 41 0 2 553 4 0 79 0 40 177 0 182 143 0 1 27 0 1 4 22 50 76 0 1 4 9 8 39 1 0 521 0 2 114 chain 5162 chr4 191154276 + 391517 391625 L1MA10 1535 - 336 443 193429 17 4 5 15 22 20 50 chain 22567 chr4 191154276 + 393400 393781 LTR7B 505 - 0 497 117730 25 2 0 5 0 1 20 14 13 12 17 16 5 0 1 54 1 42 23 6 0 31 20 93 46 0 10 100 chain 7608 chr4 191154276 + 397589 397703 LTR12C 1709 - 626 940 173495 45 8 208 61 chain 120223 chr4 191154276 + 398846 402179 HERVH-int 3825 - 0 3055 30971 376 1 4 6 3 0 167 1 2 10 18 17 57 0 367 288 1624 996 11 0 1 93 9 0 6 1 0 200 15 0 29 50 53 67 0 1 275 7 12 6 2 0 11 chain 30165 chr4 191154276 + 401051 401369 AluYb8 318 + 0 318 84286 318 chain 23077 chr4 191154276 + 402720 403088 LTR7B 505 - 20 505 115263 12 0 1 5 0 1 12 14 13 24 5 4 5 0 1 54 1 75 26 1 17 34 1 0 4 8 26 16 1 0 40 0 10 105 chain 23314 chr4 191154276 + 434467 434754 AluSp 311 - 25 311 114132 154 1 0 132 chain 32448 chr4 191154276 + 445896 446779 HERVL66-int 1251 + 244 915 80115 8 21 0 47 19 1 17 14 9 12 96 69 91 1 0 61 12 1 25 14 11 44 10 9 29 1 0 68 19 17 48 45 18 46 110 15 25 chain 41942 chr4 191154276 + 448485 449029 LTR66 600 + 0 575 66697 165 0 1 192 2 0 54 2 0 30 1 18 23 7 24 68 chain 352633 chr4 191154276 + 452668 457704 L1PA7 6471 + 2029 6468 11532 234 0 2 38 15 18 194 0 6 120 1 0 59 311 10 179 0 4 193 10 14 55 6 10 331 1 0 7 17 6 137 0 2 191 0 1 49 4 0 120 0 1 66 4 0 80 25 25 156 0 2 97 306 0 170 0 2 37 0 1 162 0 2 51 7 7 116 1 2 562 2 0 72 2 1 680 16 15 152 chain 78510 chr4 191154276 + 477817 478865 MER11C 1089 + 6 1069 44266 240 0 9 62 0 4 32 1 0 31 2 1 147 52 51 107 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 3623 chr4 191154276 + 481521 481564 MER51C 639 + 57 100 213295 43 chain 10776 chr4 191154276 + 485525 485656 MER4-int 2692 - 2443 2574 157094 131 chain 22512 chr4 191154276 + 491399 491710 AluY 311 + 4 297 117972 104 0 1 14 1 0 10 14 5 149 9 0 10 chain 23291 chr4 191154276 + 491712 491984 AluSg 306 + 0 271 114252 26 1 0 245 chain 43234 chr4 191154276 + 503831 504343 MER9a1 513 - 1 513 65133 512 chain 127943 chr4 191154276 + 543632 545205 SVA_D 2077 - 0 2032 28584 574 0 1 83 5 104 52 24 384 87 0 37 64 10 10 31 40 0 595 0 2 8 chain 3108 chr4 191154276 + 544562 544602 SVA_D 2077 - 1583 1623 104298 40 chain 59020 chr4 191154276 + 586099 586744 SVA_D 2077 + 1432 2077 53381 645 chain 346567 chr4 191154276 + 588155 592897 L1PA11 4918 - 354 4915 11708 10 1 0 15 31 22 9 4 0 19 6 9 5 2 0 68 2 0 12 1 0 70 9 12 268 5 0 379 8 0 218 1 16 290 6 0 189 1 2 68 1 3 93 0 1 158 2 1 17 0 1 44 0 4 229 5 8 114 1 0 77 4 0 107 0 3 46 0 1 51 0 5 106 1 2 198 0 2 151 0 3 79 0 1 4 1 0 108 195 12 782 1 0 4 6 5 108 7 10 108 0 1 17 2 1 5 2 0 33 1 0 52 2 0 13 1 0 11 0 8 11 2 1 6 2 0 36 2 0 39 chain 9011 chr4 191154276 + 633323 633467 MER54B 801 - 609 761 165537 45 10 11 11 4 9 17 0 2 57 chain 8545 chr4 191154276 + 685413 685516 MER4A 717 + 579 682 168044 103 chain 50474 chr4 191154276 + 688088 688678 LTR10C 591 + 0 591 58662 510 0 1 80 chain 30183 chr4 191154276 + 705227 705545 AluYb8 318 - 0 318 84242 318 chain 20295 chr4 191154276 + 718333 718587 AluY 311 + 0 283 126238 75 0 1 29 1 0 27 0 1 9 0 28 113 chain 99387 chr4 191154276 + 767164 768952 LTR12C 1709 + 0 1709 36930 188 33 30 38 25 21 61 0 43 33 12 7 245 1 278 127 0 47 90 52 20 180 0 4 81 101 0 10 304 0 124 1 0 82 chain 3676 chr4 191154276 + 768338 768379 LTR12C 1709 + 1399 1440 212297 41 chain 7198 chr4 191154276 + 768444 768555 LTR12C 1709 + 1505 1646 176075 57 11 40 4 0 1 39 chain 22262 chr4 191154276 + 837843 838135 AluY 311 + 10 296 119062 12 8 0 86 1 2 22 6 7 157 chain 13170 chr4 191154276 + 847904 848050 SVA_E 1901 - 0 146 147582 146 chain 23255 chr4 191154276 + 856181 856459 AluY 311 + 15 296 114415 101 8 11 169 chain 20307 chr4 191154276 + 857540 857788 AluSg 306 + 10 256 126214 241 2 0 5 chain 23060 chr4 191154276 + 913828 914130 AluY 311 + 11 309 115355 58 0 3 60 0 1 169 8 0 7 chain 3468 chr4 191154276 + 915935 915981 MLT1B 390 + 131 219 215837 36 0 42 10 chain 106180 chr4 191154276 + 969158 970330 SVA_E 1901 + 0 1563 35218 146 2 0 178 3 0 326 0 1 166 0 48 57 0 348 8 1 0 285 chain 19143 chr4 191154276 + 971808 972032 AluSp 311 + 69 293 129696 224 chain 3803 chr4 191154276 + 975057 975101 HERVL74-int 1085 + 6 50 210363 44 chain 22336 chr4 191154276 + 992763 993019 AluY 311 + 53 309 118753 256 chain 4435 chr4 191154276 + 1060960 1061015 MLT1A 405 - 340 398 201520 49 0 3 6 chain 22040 chr4 191154276 + 1081440 1081794 THE1D 372 + 0 370 120071 15 0 2 37 0 1 12 7 6 4 0 1 45 5 9 30 0 1 17 36 44 146 chain 95697 chr4 191154276 + 1119132 1120201 L1PA4 6152 - 0 1072 37899 6 3 0 453 0 2 383 0 4 224 chain 15341 chr4 191154276 + 1121812 1122143 L1PB1 5432 + 5114 5419 140364 32 1 0 10 2 0 3 2 0 8 2 0 10 0 2 39 2 1 10 8 7 41 4 3 16 1 0 4 2 0 7 10 1 19 8 5 14 2 0 24 1 0 17 7 8 9 1 0 15 chain 24836 chr4 191154276 + 1249970 1250330 THE1B 368 + 0 368 105692 169 1 0 29 8 6 10 17 29 63 7 6 56 chain 58825 chr4 191154276 + 1261290 1262234 LTR13 1007 - 52 1007 53503 144 1 7 12 0 2 64 69 67 9 0 1 20 2 1 238 39 40 60 23 28 19 4 5 4 1 0 151 13 12 71 chain 19350 chr4 191154276 + 1263835 1264095 AluJb 308 - 10 298 129070 115 1 0 40 5 35 35 1 0 63 chain 30134 chr4 191154276 + 1264300 1264689 L1PA8 5853 - 0 383 84367 93 1 0 19 2 1 54 10 9 69 2 0 44 1 0 94 chain 28240 chr4 191154276 + 1273581 1273918 L1PA5 6144 + 5802 6136 92151 36 3 1 156 1 0 141 chain 12811 chr4 191154276 + 1280799 1281002 LTR28 1034 - 810 1034 149012 114 4 0 9 3 11 38 14 31 21 chain 23455 chr4 191154276 + 1281006 1281321 MER4D1 891 + 108 420 113349 57 2 0 53 0 2 174 8 4 17 0 1 4 chain 3746 chr4 191154276 + 1302671 1302721 L1MB2 1706 - 952 1008 211221 32 0 7 4 1 0 13 chain 26727 chr4 191154276 + 1366992 1367328 MLT2A1 477 - 115 464 97235 126 1 0 24 0 1 18 0 8 12 0 4 26 0 1 129 chain 21608 chr4 191154276 + 1380897 1381155 AluSc 308 - 42 300 121741 258 chain 46312 chr4 191154276 + 1540281 1540931 PABL_A 660 - 2 660 61765 148 0 2 135 6 0 97 4 48 55 0 2 15 43 0 63 0 9 84 chain 30427 chr4 191154276 + 1708664 1708982 AluYb9 318 + 0 318 83637 318 chain 38907 chr4 191154276 + 1710982 1711792 LTR14 556 + 0 556 70858 159 0 2 99 0 2 44 1 8 16 0 1 33 300 0 9 0 5 121 6 35 22 chain 17817 chr4 191154276 + 1716320 1716642 MER49 923 + 426 807 133345 27 0 1 52 38 93 7 1 0 31 10 21 103 2 1 24 6 0 21 chain 20495 chr4 191154276 + 1720998 1721268 AluY 311 + 0 303 125643 72 0 3 107 5 37 68 2 0 16 chain 24447 chr4 191154276 + 1726654 1726957 AluSp 311 - 7 310 107823 22 0 1 106 0 1 48 2 0 125 chain 2920 chr4 191154276 + 1729313 1729347 MER54A 897 - 803 837 226696 34 chain 5101 chr4 191154276 + 1741053 1741112 LTR10A 586 - 527 586 194073 59 chain 91785 chr4 191154276 + 1829011 1831054 SVA_F 1814 - 0 1150 39035 595 409 0 4 0 1 27 1 0 10 1 0 166 1 0 10 4 0 39 0 16 45 78 0 19 1 2 25 1 0 28 327 11 28 90 0 12 50 0 25 6 46 41 chain 7995 chr4 191154276 + 1829613 1829740 SVA_F 1814 - 649 776 108659 127 chain 9060 chr4 191154276 + 1829741 1829944 SVA_F 1814 - 603 803 77962 24 1 0 10 1 0 39 1 0 127 chain 3337 chr4 191154276 + 1829946 1829999 SVA_F 1814 - 916 967 108659 12 1 0 31 1 0 8 chain 3035 chr4 191154276 + 1830323 1830391 SVA_F 1814 - 1042 1150 77962 21 6 46 41 chain 9967 chr4 191154276 + 1830498 1830622 SVA_F 1814 - 594 716 129021 33 1 0 17 1 0 35 19 19 18 chain 16147 chr4 191154276 + 1830622 1830802 SVA_F 1814 - 540 718 111643 87 1 0 10 2 0 42 1 2 37 chain 8281 chr4 191154276 + 1830830 1830920 SVA_F 1814 - 570 656 105654 57 1 0 10 3 0 19 chain 4601 chr4 191154276 + 1830932 1830982 SVA_F 1814 - 668 718 105654 50 chain 2040 chr4 191154276 + 1831070 1831132 SVA_F 1814 - 870 932 79641 62 chain 4816 chr4 191154276 + 1869549 1869745 L1MC1 2226 - 56 255 197159 16 108 117 44 2 0 13 4 0 9 chain 22876 chr4 191154276 + 1921389 1921679 AluSc5 308 + 11 295 116209 115 4 0 162 2 0 7 chain 6085 chr4 191154276 + 1956519 1956615 MER20 218 + 17 131 184540 40 15 33 41 chain 7399 chr4 191154276 + 1969586 1969726 LOR1a 498 - 189 355 174775 74 39 65 27 chain 19972 chr4 191154276 + 1995074 1995317 AluSp 311 + 48 294 127227 16 0 2 157 0 1 70 chain 387127 chr4 191154276 + 2000000 2005555 L1PA8A 6298 + 1300 6281 10545 68 15 10 385 0 3 18 0 2 179 5 1 10 0 2 217 0 1 67 0 3 216 0 3 26 1 0 64 0 1 37 0 3 140 0 4 154 16 23 32 0 4 21 0 4 238 22 10 31 2 0 87 5 0 9 7 5 69 0 3 24 29 19 188 3 7 179 0 4 118 0 1 282 4 1 230 5 30 43 8 12 93 613 0 251 1 0 547 9 12 79 0 2 546 5 1 56 4 5 8 1 2 47 0 3 41 chain 211372 chr4 191154276 + 2029672 2034865 L1PA10 4194 - 33 3822 18409 11 1 0 33 3 0 24 1 0 4 1 0 485 0 1 197 3 5 349 0 1 94 0 1 18 1828 1000 4 1 0 389 9 8 239 581 16 798 25 26 55 1 0 8 7 0 15 1 0 8 chain 14089 chr4 191154276 + 2031593 2031753 L1PA10 4194 + 3856 4016 144265 160 chain 2507 chr4 191154276 + 2104759 2104788 L1M2 1805 + 496 525 233037 29 chain 310574 chr4 191154276 + 2111723 2115124 L1PA4 6152 + 2744 6152 12983 1196 0 1 697 0 5 464 0 1 1044 chain 120250 chr4 191154276 + 2162814 2164242 LTR12C 1709 + 0 1709 30965 294 3 4 67 0 2 210 2 1 72 0 278 184 1 0 4 4 2 106 0 4 481 chain 3918 chr4 191154276 + 2191415 2191475 L1MA4 2864 + 1293 1346 208567 24 4 0 24 3 0 5 chain 403534 chr4 191154276 + 2202251 2209050 L1PB1 5432 + 110 5359 9984 37 9 10 411 326 0 26 6 0 266 1 0 242 0 12 59 0 16 211 27 14 192 0 2 69 0 1 42 315 6 93 0 3 436 309 2 45 10 42 29 0 8 111 5 1 11 323 0 147 1 2 162 1 2 6 1 0 499 0 1 192 0 1 209 1 4 232 310 4 15 11 5 280 1 4 330 0 1 23 3 0 477 1 2 9 3 0 25 1 0 7 1 0 12 4 0 11 2 0 50 1 0 10 9 8 44 1 0 15 14 1 30 8 5 14 3 1 12 chain 5710 chr4 191154276 + 2226721 2226790 Tigger3b 1229 - 1116 1185 188019 69 chain 8962 chr4 191154276 + 2331135 2331249 L1MB3 1562 + 1230 1344 165814 114 chain 22397 chr4 191154276 + 2351002 2351254 L1PA3long 6157 + 5905 6157 118502 252 chain 5131 chr4 191154276 + 2377901 2377981 MER33 330 + 204 282 193770 7 0 2 33 7 3 33 chain 23615 chr4 191154276 + 2382302 2382652 THE1A 353 + 0 353 112497 44 10 11 39 1 0 14 24 28 66 1 0 151 chain 125491 chr4 191154276 + 2382652 2384892 THE1A-int 1579 + 0 1573 29246 470 312 0 174 6 8 4 0 1 213 0 1 143 5 6 417 1 0 72 359 0 64 chain 25786 chr4 191154276 + 2384474 2384792 THE1A 353 - 0 317 100931 241 4 3 73 chain 4947 chr4 191154276 + 2399448 2399508 L1MB3 1562 - 263 323 195728 60 chain 28540 chr4 191154276 + 2441873 2442172 AluYa5 310 - 11 310 90999 299 chain 25112 chr4 191154276 + 2469123 2469408 AluY 311 + 8 286 104211 115 1 0 3 6 0 160 chain 11802 chr4 191154276 + 2474788 2475257 Tigger1 2417 + 1582 1747 153036 37 314 10 118 chain 11125 chr4 191154276 + 2478878 2479026 THE1B 368 + 0 163 155712 44 6 21 98 chain 110923 chr4 191154276 + 2479598 2481116 THE1B-int 1605 + 60 1605 33959 370 1 26 40 3 0 105 1 0 79 28 28 37 0 9 9 10 1 17 12 7 105 2 3 251 5 6 4 1 0 144 1 0 136 0 1 49 0 7 41 0 2 4 0 1 63 chain 24857 chr4 191154276 + 2481116 2481464 THE1B 368 + 0 368 105588 23 1 0 21 6 24 55 0 3 46 1 0 20 0 2 93 6 5 76 chain 29198 chr4 191154276 + 2496406 2496747 LTR10C 591 - 251 591 88062 80 2 1 259 chain 29525 chr4 191154276 + 2523846 2524155 AluYb9 318 + 0 309 86548 309 chain 19644 chr4 191154276 + 2530337 2530575 AluSp 311 + 37 274 128270 220 1 0 17 chain 29157 chr4 191154276 + 2551112 2551422 AluYa5 310 - 0 310 88272 310 chain 24751 chr4 191154276 + 2582587 2582878 AluY 311 + 13 298 106162 119 0 1 155 7 0 10 chain 19489 chr4 191154276 + 2611390 2611667 AluSc8 310 + 16 297 128691 116 24 27 100 3 4 34 chain 22071 chr4 191154276 + 2643112 2643376 AluY 311 + 9 277 119917 63 0 3 57 0 1 144 chain 21865 chr4 191154276 + 2729679 2729962 AluSp 311 - 19 311 120771 40 1 15 184 6 1 52 chain 218040 chr4 191154276 + 2739354 2742825 HERVL-int 5654 + 2835 5654 18002 118 4 5 190 0 1 99 49 8 156 1 3 455 0 5 11 22 0 28 0 4 46 0 2 125 0 2 53 15 13 90 0 1 650 1 4 77 0 1 56 315 2 73 2 0 61 0 13 177 6 8 6 0 2 39 0 5 58 318 0 27 3 0 96 1 5 9 3 4 31 chain 29310 chr4 191154276 + 2742827 2743258 MLT2A1 477 + 2 477 87516 31 0 5 19 0 1 28 0 1 82 9 8 27 0 1 35 0 1 36 1 0 24 1 0 73 14 56 8 8 0 29 0 4 6 chain 64174 chr4 191154276 + 2764080 2765134 LTR12E 1234 - 0 1001 50925 112 20 13 20 1 0 17 0 1 29 104 0 32 0 29 34 1 0 87 9 20 93 5 7 49 42 1 81 0 18 81 0 1 52 1 0 75 10 53 90 3 0 6 chain 10440 chr4 191154276 + 2765134 2765276 LTR12C 1709 + 1564 1709 152880 55 7 6 13 0 4 67 chain 9566 chr4 191154276 + 2774822 2775072 MSTD 398 - 127 392 162753 46 13 11 13 4 0 42 19 23 26 58 75 29 chain 58345 chr4 191154276 + 2779109 2780176 MER4-int 2692 - 1740 2486 53780 312 324 0 234 4 3 144 0 4 49 chain 33944 chr4 191154276 + 2780179 2781125 LTR9 672 - 11 672 77700 15 1 0 33 19 21 44 13 14 14 38 33 38 1 84 10 41 0 273 324 0 17 22 21 4 0 1 39 chain 159403 chr4 191154276 + 2784135 2786285 L1PBa 3878 - 1650 3778 23414 198 15 3 53 0 5 53 1 0 31 0 5 258 3 0 70 1 0 4 0 1 36 4 5 57 25 1 21 2 12 352 0 1 88 0 1 145 2 0 8 10 8 290 1 0 26 1 0 262 16 14 7 1 0 46 6 11 11 7 6 39 chain 9416 chr4 191154276 + 2840270 2840470 MER30 238 + 0 232 163479 13 1 17 66 18 31 48 34 37 20 chain 3000 chr4 191154276 + 2843437 2843473 Charlie1a 1436 - 387 423 225037 36 chain 24021 chr4 191154276 + 2853573 2853862 AluSp 311 - 17 311 110212 107 0 3 52 1 0 38 0 3 91 chain 13931 chr4 191154276 + 2863589 2863762 MER30 238 + 31 238 144818 72 4 38 97 chain 526972 chr4 191154276 + 2918259 2925321 L1PA7 6471 - 4 6468 4505 9 6 0 74 18 15 59 1 2 21 0 1 5 1 0 298 0 1 279 2 3 71 5 8 288 11 19 506 7 12 120 0 4 41 1 2 463 318 0 274 4 0 335 3 2 58 3 0 19 0 2 394 1 7 185 0 4 245 5 0 465 300 0 224 0 1 200 13 17 36 2 0 802 10 12 471 3 4 406 chain 18940 chr4 191154276 + 2940022 2940242 AluSp 311 + 57 293 130251 164 1 17 55 chain 31255 chr4 191154276 + 2966440 2966946 LTR61 567 + 0 528 82071 21 6 0 34 17 11 28 3 0 56 19 14 28 0 2 18 0 1 13 4 57 28 2 0 55 12 0 141 1 0 8 1 2 11 chain 23785 chr4 191154276 + 2981166 2981438 AluSp 311 + 9 280 111557 34 1 0 237 chain 3628 chr4 191154276 + 2981704 2981833 MER65D 500 - 356 485 213198 11 4 0 7 14 15 24 38 41 31 chain 3212 chr4 191154276 + 2997822 2997858 MSTD 398 - 113 149 220704 36 chain 31185 chr4 191154276 + 3045048 3045476 MER41B 635 + 190 624 82189 318 0 1 40 26 31 44 chain 32973 chr4 191154276 + 3047840 3048274 MER57A1 433 - 0 433 79258 149 0 2 29 0 1 80 0 4 60 13 5 103 chain 138387 chr4 191154276 + 3048280 3052547 MER57-int 2662 - 4 2622 26416 33 3 0 33 5 0 11 1 0 13 13 10 9 1 0 6 2 0 20 40 44 5 0 2 36 18 12 81 25 23 17 1301 0 330 0 1 63 3 4 44 3 0 159 1 13 100 1 2 185 7 6 19 898 551 133 4 0 310 1 0 57 0 15 107 16 24 13 0 1 58 1 0 9 38 25 34 chain 76700 chr4 191154276 + 3048655 3049950 LTR13_ 950 + 0 950 45123 68 6 4 12 334 0 77 0 2 105 0 2 120 23 10 550 chain 10527 chr4 191154276 + 3059648 3059769 MER41B 635 - 182 303 158142 121 chain 4849 chr4 191154276 + 3062158 3062219 MER4A1 472 - 4 66 196797 6 0 1 55 chain 136946 chr4 191154276 + 3095643 3097238 SVA_B 1603 - 0 1550 26652 443 0 1 150 1 0 33 43 0 111 1 0 13 1 0 799 chain 2159 chr4 191154276 + 3096271 3096313 SVA_B 1603 - 627 669 158311 42 chain 4090 chr4 191154276 + 3097352 3097405 MLT1D 503 + 447 500 206082 53 chain 46179 chr4 191154276 + 3115619 3116132 MER9a1 513 - 0 513 61866 513 chain 18603 chr4 191154276 + 3152911 3153316 MSTA 426 - 26 426 131213 18 1 9 49 7 26 60 3 0 10 9 11 8 59 0 4 21 0 16 4 48 28 7 12 101 chain 12203 chr4 191154276 + 3153322 3153502 MER1B 344 + 158 339 151413 73 4 1 35 14 18 54 chain 484363 chr4 191154276 + 3162658 3168793 L1PA7 6471 - 9 6462 7576 841 2 0 7 0 1 698 2 0 1065 1 6 237 0 1 109 11 6 642 9 15 578 0 2 215 0 9 451 15 18 485 14 30 79 0 3 70 26 101 57 5 15 106 0 1 6 1 0 37 57 254 40 81 80 188 chain 26734 chr4 191154276 + 3334780 3335075 AluYf5 307 - 12 307 97208 295 chain 13628 chr4 191154276 + 3349194 3349480 MER101-int 1169 - 217 489 145870 36 12 9 21 3 4 61 21 20 19 13 8 35 13 6 36 0 1 16 chain 436708 chr4 191154276 + 3456075 3462111 HERVL-int 5654 + 0 5263 9143 280 5 6 26 1 0 799 0 1 340 15 2 166 2 1 225 325 4 57 0 2 994 0 3 486 0 1 118 2 0 98 444 0 355 1 3 179 15 13 90 0 1 650 2 5 78 0 1 94 6 5 142 10 7 31 chain 3770 chr4 191154276 + 3538515 3538564 MER4B 649 + 0 47 210810 24 2 0 23 chain 150272 chr4 191154276 + 3539580 3541490 SVA_D 2077 - 0 2077 24570 99 0 4 567 33 33 132 1 50 63 49 0 91 77 2 6 1 0 69 0 162 69 0 40 40 0 40 555 0 2 28 5 0 25 chain 4300 chr4 191154276 + 3540475 3540524 SVA_D 2077 - 596 645 75826 49 chain 6757 chr4 191154276 + 3540615 3540692 SVA_D 2077 - 736 813 75826 77 chain 6100 chr4 191154276 + 3559574 3559776 MER83C 372 + 174 365 184411 15 117 106 70 chain 22414 chr4 191154276 + 3575757 3576037 AluSg7 307 + 31 307 118414 101 4 0 175 chain 4033 chr4 191154276 + 3586849 3586897 MLT2D 439 + 391 439 206881 48 chain 2703 chr4 191154276 + 3622258 3622393 MER51A 677 - 446 501 230202 30 90 10 15 chain 9764 chr4 191154276 + 3648812 3649047 MLT1A0 366 + 88 342 161776 20 105 123 43 0 1 67 chain 26125 chr4 191154276 + 3674553 3674905 THE1C 375 + 0 350 99506 180 0 1 6 1 0 119 15 13 31 chain 3029 chr4 191154276 + 3718028 3718060 MLT1C 463 + 67 99 224393 32 chain 10879 chr4 191154276 + 3732997 3733135 MER85 139 - 0 138 156668 138 chain 22207 chr4 191154276 + 3824893 3825178 AluY 311 + 4 292 119315 56 0 1 71 0 1 126 1 2 31 chain 2486 chr4 191154276 + 3842576 3842621 MER96B 391 + 109 156 233260 24 5 7 16 chain 16451 chr4 191154276 + 3848114 3848462 THE1B 368 + 1 368 137060 110 23 24 34 1 0 6 61 81 50 23 22 40 chain 84052 chr4 191154276 + 3885077 3886079 LTR5A 1029 - 0 1017 41883 50 0 1 109 0 1 721 0 13 122 chain 325988 chr4 191154276 + 3895060 3898896 HERVE-int 4064 - 220 4064 12344 368 1 0 70 0 10 456 0 1 491 0 1 237 3 0 675 1 2 109 0 1 612 4 1 202 0 1 607 chain 82355 chr4 191154276 + 3907058 3908062 LTR5A 1029 - 11 1029 42606 569 0 1 301 0 13 134 chain 82378 chr4 191154276 + 3927369 3928336 LTR5_Hs 974 + 0 974 42596 50 0 3 405 0 4 512 chain 28214 chr4 191154276 + 3929172 3929570 LTR7 482 + 0 470 92256 69 8 46 109 3 4 30 0 1 4 1 32 70 1 2 103 chain 281684 chr4 191154276 + 3929581 3933137 HERVH-int 3825 + 4 3825 14553 17 3 4 187 0 11 312 22 69 14 1 0 13 24 0 19 34 10 31 3 23 65 1 0 137 0 1 309 15 0 459 11 37 286 3 13 1049 9 11 39 8 218 260 0 2 225 chain 28679 chr4 191154276 + 3934397 3934807 LTR7 482 + 1 482 90410 68 8 46 109 3 4 11 21 53 190 chain 11485 chr4 191154276 + 3946511 3946679 MER30 238 - 1 183 154357 111 5 0 7 8 27 37 chain 94214 chr4 191154276 + 3965590 3966977 LTR12C 1709 - 0 1709 38295 84 8 7 78 1 0 312 44 13 40 0 207 120 0 118 218 28 8 32 0 1 4 2 0 49 1 0 5 0 1 28 3 46 36 45 46 213 12 19 24 chain 91163 chr4 191154276 + 3979050 3980094 LTR5A 1029 - 0 1029 39244 882 15 0 147 chain 87402 chr4 191154276 + 3987636 3988639 LTR5A 1029 - 0 1029 40606 80 1 7 159 0 3 633 0 13 122 0 4 8 chain 22881 chr4 191154276 + 3995131 3995433 AluY 311 + 11 299 116180 20 18 4 264 chain 23221 chr4 191154276 + 4001515 4001801 AluSp 311 + 11 297 114592 286 chain 294475 chr4 191154276 + 4003468 4007139 HERVH-int 3825 - 0 3825 13735 1374 1 49 100 0 1 198 6 11 31 4 0 496 0 1 464 0 2 319 1 0 51 1 0 4 0 1 13 84 0 17 1 0 37 22 0 18 4 21 13 14 126 49 0 51 12 15 47 298 4 1 20 chain 3086 chr4 191154276 + 4008354 4008389 MER5A1 166 + 101 136 223170 35 chain 523298 chr4 191154276 + 4015243 4021430 L1PA4 6152 - 16 6152 4839 126 1 9 106 0 7 233 0 1 346 0 4 1081 0 1 169 1 0 36 1 2 76 0 1 254 4 6 430 0 1 36 0 1 420 29 0 366 29 0 97 9 7 15 0 1 384 5 6 9 0 3 101 16 12 539 22 1 918 0 3 328 chain 2876 chr4 191154276 + 4026022 4026055 MLT1I 406 + 367 400 227419 33 chain 31619 chr4 191154276 + 4030005 4030431 MER4A1 472 + 37 467 81453 189 1 22 11 21 0 190 0 4 14 chain 46943 chr4 191154276 + 4031967 4032525 LTR6B 557 - 0 557 61267 122 1 0 435 chain 118612 chr4 191154276 + 4035684 4037385 HERVS71-int 4705 - 2403 4029 31575 316 11 10 291 1 0 19 1 3 61 1 0 19 5 6 334 0 1 245 2 3 29 12 3 126 2 1 27 4 0 21 127 67 18 6 4 17 1 0 5 chain 35453 chr4 191154276 + 4038851 4039291 LTR6B 557 - 0 438 75616 337 2 0 101 chain 4303 chr4 191154276 + 4039646 4039709 MER58A 224 - 109 173 203186 20 2 3 41 chain 29969 chr4 191154276 + 4041235 4041553 AluYb9 318 - 0 318 84918 318 chain 68820 chr4 191154276 + 4042662 4043720 MER11A 1151 + 0 1134 48887 28 2 0 27 0 99 73 0 4 63 4 0 38 0 2 109 0 1 26 1 3 65 5 6 140 20 21 132 24 0 10 8 15 22 18 0 36 0 1 57 19 21 13 0 7 4 7 0 41 7 11 59 chain 82742 chr4 191154276 + 4045903 4049022 HERVK11-int 2540 - 305 1854 42442 124 8 10 68 17 16 37 4 5 138 1 0 106 27 22 419 82 51 11 1 0 12 17 7 12 44 44 14 10 9 65 1607 124 46 6 5 12 3 0 45 11 0 7 45 35 19 2 0 9 1 0 4 33 22 32 2 1 18 chain 28629 chr4 191154276 + 4053096 4053402 AluYb8 318 + 11 317 90616 306 chain 7284 chr4 191154276 + 4053432 4053515 LTR2 463 - 99 182 175556 83 chain 79165 chr4 191154276 + 4073409 4074540 L1PB1 5432 - 661 1815 43970 141 1 2 16 2 6 41 4 6 171 3 4 164 13 15 34 2 1 47 0 1 174 21 21 201 1 6 17 1 9 77 chain 30748 chr4 191154276 + 4075123 4075575 HERVK-int 6823 + 5125 5578 82958 34 0 1 4 4 3 105 0 3 198 1 0 4 19 19 4 0 1 13 1 0 9 5 4 51 chain 84892 chr4 191154276 + 4076016 4077040 LTR5A 1029 + 0 1029 41556 150 1 0 693 0 4 117 0 2 63 chain 19089 chr4 191154276 + 4098767 4099033 L1PA8 5853 + 5586 5847 129848 22 2 0 62 19 18 52 2 1 19 1 0 87 chain 11946 chr4 191154276 + 4101993 4102149 L1MA8 2339 + 1935 2088 152419 19 2 0 55 1 0 79 chain 27325 chr4 191154276 + 4116563 4116855 AluYd8 298 - 6 298 95191 292 chain 97103 chr4 191154276 + 4116945 4118335 LTR12C 1709 + 0 1702 37543 209 74 83 6 8 0 40 19 62 51 15 18 181 0 278 184 9 6 100 1 0 6 11 4 333 1 0 58 7 6 77 chain 80507 chr4 191154276 + 4122042 4123065 LTR5A 1029 - 7 1029 43386 870 14 13 139 chain 27724 chr4 191154276 + 4126491 4126791 AluY 311 + 10 311 93953 122 0 1 178 chain 321364 chr4 191154276 + 4132359 4136146 HERVE-int 4064 - 220 4064 12543 222 0 56 90 1 0 70 0 10 415 0 1 40 0 1 834 1 0 569 0 1 724 4 1 42 10 10 468 7 0 290 chain 82644 chr4 191154276 + 4152236 4153252 LTR5A 1029 - 0 1029 42486 428 0 1 4 6 5 444 0 13 134 chain 346681 chr4 191154276 + 4162483 4166540 HERVE-int 4064 - 0 4064 11704 588 1 0 69 0 10 1188 8 7 667 1 2 722 4 1 374 1 2 434 chain 32432 chr4 191154276 + 4168650 4169016 HERVE-int 4064 - 221 587 80149 366 chain 107440 chr4 191154276 + 4169017 4170275 HERVE-int 4064 - 587 1855 34852 71 0 10 1187 chain 118887 chr4 191154276 + 4170278 4171674 HERVE-int 4064 - 1855 3253 31459 673 2 3 529 7 8 185 chain 8419 chr4 191154276 + 4171678 4171782 HERVE-int 4064 - 3254 3358 168734 104 chain 55946 chr4 191154276 + 4171805 4172483 HERVE-int 4064 - 3383 4062 55158 283 4 5 391 chain 10217 chr4 191154276 + 4209285 4209432 L1MB2 1706 + 1189 1324 159526 38 12 0 97 chain 34234 chr4 191154276 + 4209482 4210135 MER4A 717 - 8 717 77303 35 0 1 26 115 171 47 5 21 15 0 1 21 49 42 206 11 0 123 chain 24270 chr4 191154276 + 4221147 4221436 AluY 311 + 1 295 108843 158 4 9 127 chain 55643 chr4 191154276 + 4232248 4232921 L1PA5 6144 - 0 686 55341 11 1 3 132 1 5 187 0 1 169 0 2 157 0 4 15 chain 8016 chr4 191154276 + 4236817 4236940 Tigger4a 237 - 22 192 170959 24 2 20 23 1 30 73 chain 22836 chr4 191154276 + 4248480 4248776 AluSg4 309 - 17 295 116416 209 18 0 69 chain 28958 chr4 191154276 + 4255192 4255552 MLT2A1 477 + 0 358 89184 169 4 1 111 0 1 76 chain 3074 chr4 191154276 + 4340138 4340175 LTR33B 472 - 19 56 223481 37 chain 4689 chr4 191154276 + 4343478 4343530 MSTC 436 + 0 52 198646 52 chain 21386 chr4 191154276 + 4347212 4347489 L1PA7 6471 - 6 280 122566 16 9 5 135 1 2 116 chain 60161 chr4 191154276 + 4350124 4350873 LTR12 884 - 0 884 52744 151 0 1 170 0 4 158 0 22 35 1 2 71 0 107 163 chain 5553 chr4 191154276 + 4360934 4361034 LTR26E 604 + 115 227 189542 14 22 34 64 chain 33354 chr4 191154276 + 4362581 4363368 MER4A1 472 + 0 472 78644 162 331 16 48 5 26 11 21 0 209 chain 8703 chr4 191154276 + 4364471 4364615 THE1C 375 - 211 362 167179 71 29 30 10 0 6 34 chain 22390 chr4 191154276 + 4366179 4366531 THE1B 368 - 2 368 118535 166 4 0 19 23 22 15 4 8 64 13 28 44 chain 28740 chr4 191154276 + 4369809 4370163 THE1A 353 + 0 353 90170 111 1 0 91 1 0 87 0 1 63 chain 13811 chr4 191154276 + 4435109 4435269 SVA_E 1901 + 1744 1898 145220 146 6 0 8 chain 3827 chr4 191154276 + 4445858 4445973 LTR32 486 + 220 368 209968 21 1 0 9 48 83 31 1 0 4 chain 3805 chr4 191154276 + 4456797 4456864 MIR 256 - 173 227 210303 44 13 0 10 chain 7512 chr4 191154276 + 4466365 4466449 L1PREC2 3366 - 2346 2430 174084 84 chain 4911 chr4 191154276 + 4472002 4472098 MER20 218 - 98 196 196147 21 29 31 46 chain 20969 chr4 191154276 + 4510867 4511227 L1PA11 4918 - 340 678 124038 11 2 0 13 1 0 13 46 33 20 1 0 14 2 0 67 2 0 13 2 1 54 8 8 91 chain 54131 chr4 191154276 + 4512211 4512897 L1PA8 5853 + 5174 5853 56274 19 1 2 369 1 0 46 2 0 71 1 0 8 1 0 7 8 7 37 2 1 19 1 0 93 chain 32607 chr4 191154276 + 4547155 4547603 MLT2A2 560 - 0 560 79842 140 5 111 6 0 2 121 12 11 133 1 6 30 chain 23555 chr4 191154276 + 4548579 4548953 THE1D 372 + 0 372 112823 15 6 8 18 12 0 8 0 1 116 37 45 129 1 0 32 chain 28335 chr4 191154276 + 4552011 4552365 THE1A 353 + 0 353 91815 109 2 1 117 0 1 6 2 1 118 chain 125674 chr4 191154276 + 4552365 4553917 THE1A-int 1579 + 0 1573 29197 353 0 1 135 0 1 639 5 4 8 0 19 123 0 1 289 chain 27973 chr4 191154276 + 4553923 4554271 THE1A 353 + 0 353 93102 37 0 5 311 chain 18705 chr4 191154276 + 4556664 4557031 THE1B 368 - 0 368 130930 40 23 17 62 13 21 14 48 45 52 5 6 29 1 2 80 chain 27070 chr4 191154276 + 4571633 4571989 THE1B 368 - 0 368 96035 66 2 0 129 2 1 107 6 21 44 chain 28647 chr4 191154276 + 4575978 4576348 THE1C 375 + 0 375 90528 63 0 1 88 6 11 187 1 0 25 chain 3024 chr4 191154276 + 4580039 4580073 MIR 256 - 122 156 224484 34 chain 12963 chr4 191154276 + 4585048 4585227 MLT2A2 560 + 0 166 148379 46 13 0 120 chain 6162 chr4 191154276 + 4586672 4586758 MLT1A0-int 1658 + 14 104 183869 4 1 0 7 1 0 36 0 6 37 chain 107337 chr4 191154276 + 4588599 4590055 L1PA8 5853 + 4351 5853 34882 411 0 11 232 5 4 61 29 30 27 12 12 70 0 27 59 0 1 54 2 0 76 6 8 24 1 0 106 1 0 45 2 0 70 1 0 13 1 0 7 0 15 26 2 1 19 6 5 88 chain 19598 chr4 191154276 + 4605240 4605539 THE1B 368 - 11 313 128389 45 2 0 10 0 1 129 12 11 18 1 5 33 12 13 37 chain 54535 chr4 191154276 + 4606137 4606857 MER4E1 777 + 18 769 56010 7 5 0 116 15 17 7 0 5 159 0 19 64 0 1 14 6 7 104 4 12 219 chain 4128 chr4 191154276 + 4632779 4632851 L1MB7 1623 - 1028 1102 205532 36 12 14 24 chain 5141 chr4 191154276 + 4633026 4633139 L1MB3 1562 - 98 185 193650 26 38 13 4 1 0 44 chain 42154 chr4 191154276 + 4645419 4645943 LTR10C 591 - 0 581 66448 75 8 0 165 2 65 27 0 2 247 chain 6164 chr4 191154276 + 4653127 4653203 MER51A 677 + 8 84 183846 76 chain 5783 chr4 191154276 + 4657850 4657922 MLT1A1 405 + 38 110 187340 72 chain 4259 chr4 191154276 + 4669532 4669594 MER5A1 166 - 35 98 203758 11 4 5 47 chain 8353 chr4 191154276 + 4671508 4671604 MER41B 635 + 1 97 169105 96 chain 22868 chr4 191154276 + 4675538 4675815 AluSp 311 - 18 292 116237 165 2 0 67 1 0 42 chain 17625 chr4 191154276 + 4702806 4703016 L1PB1 5432 - 356 565 133919 186 1 0 23 chain 23376 chr4 191154276 + 4705140 4705475 THE1B 368 + 0 344 113781 169 1 0 29 35 45 101 chain 3158 chr4 191154276 + 4748353 4748391 MLT1H 522 - 101 141 221766 19 0 2 19 chain 28676 chr4 191154276 + 4766634 4766939 AluYa5 310 - 5 310 90427 305 chain 3238 chr4 191154276 + 4787224 4787258 MIR 256 - 118 152 220267 34 chain 6718 chr4 191154276 + 4795436 4795580 HAL1-2a_MD 234 - 4 218 179555 30 1 65 5 3 0 34 3 0 6 1 10 20 0 18 12 15 0 14 chain 4120 chr4 191154276 + 4807716 4807766 LTR67B 553 + 58 114 205652 42 0 6 8 chain 157423 chr4 191154276 + 4815396 4817381 L1PA8A 6298 + 4283 6290 23674 384 8 6 258 8 23 292 16 13 75 0 5 9 8 3 138 0 3 12 0 1 63 0 2 437 0 1 140 0 4 33 0 1 104 chain 22336 chr4 191154276 + 4826918 4827284 THE1B 368 - 0 368 118755 125 5 4 7 1 0 18 0 1 4 1 0 4 10 15 21 1 0 15 19 0 8 8 27 119 chain 6866 chr4 191154276 + 4878070 4878152 L1PA8 5853 - 0 82 178450 82 chain 81807 chr4 191154276 + 4918160 4919322 THE1C-int 1605 - 0 1605 42840 9 0 1 127 0 5 198 19 19 74 66 65 385 0 387 26 10 5 107 5 59 118 0 2 18 chain 18202 chr4 191154276 + 4922562 4922791 7SK 245 - 3 245 132325 94 4 17 131 chain 27022 chr4 191154276 + 4925378 4925725 THE1D 372 + 0 360 96211 71 1 11 103 5 8 167 chain 67935 chr4 191154276 + 4926597 4927424 L1PA7 6471 - 4556 5386 49267 280 0 2 244 4 5 299 chain 364693 chr4 191154276 + 4927464 4932376 L1PA7 6471 + 1961 6468 11239 126 0 1 372 515 0 180 6 8 836 1 2 120 1 0 722 0 1 771 9 11 7 2 0 390 0 2 188 0 2 60 0 102 331 1 0 28 0 1 189 0 4 46 4 0 7 chain 39108 chr4 191154276 + 4927980 4928477 MER9a3 513 + 15 513 70591 95 0 1 145 1 0 178 1 2 77 chain 19518 chr4 191154276 + 4939963 4940250 L1PB2 3958 + 3557 3838 128597 61 5 4 59 2 1 53 1 0 18 2 0 22 1 0 63 chain 2683 chr4 191154276 + 4945413 4945441 MIR3 191 - 110 138 230396 28 chain 550830 chr4 191154276 + 4955624 4961646 L1PA2 6032 - 1 6030 1341 150 0 7 2002 0 3 2391 0 5 774 7 0 443 1 0 254 chain 142627 chr4 191154276 + 4998244 4999997 L1PA8 5853 - 126 1886 25708 37 1 0 8 8 0 74 2 0 44 1 0 449 0 8 91 4 10 262 5 6 426 0 3 93 2 1 25 0 2 221 chain 245604 chr4 191154276 + 5000016 5003463 L1PA10 4194 - 504 3962 16478 160 2 7 637 0 1 151 0 1 58 23 30 21 0 1 163 4 5 269 0 2 23 23 27 134 0 1 128 2 0 111 0 1 457 5 10 407 1 0 131 4 3 15 0 17 235 25 26 49 10 6 9 3 2 6 6 0 14 16 10 6 1 0 21 2 0 9 65 55 19 7 6 5 1 0 9 chain 29063 chr4 191154276 + 5008710 5009036 LTR17 781 + 0 326 88704 326 chain 7811 chr4 191154276 + 5017697 5018063 MSTD 398 + 8 381 172241 10 1 0 4 1 2 28 50 47 30 95 110 42 74 69 31 chain 2583 chr4 191154276 + 5027258 5027467 LTR16C 481 + 242 449 231898 19 166 164 24 chain 30012 chr4 191154276 + 5044551 5044863 AluYb8 318 + 0 312 84767 312 chain 41551 chr4 191154276 + 5047189 5047682 L1PA8A 6298 - 1506 2006 67219 193 0 7 300 chain 117505 chr4 191154276 + 5047695 5049176 L1PA8A 6298 + 4784 6291 31965 204 8 11 6 5 0 338 4 32 111 1 0 17 0 1 787 chain 19722 chr4 191154276 + 5068717 5069083 THE1B 368 - 0 368 128036 85 6 0 43 59 65 40 29 31 104 chain 3803 chr4 191154276 + 5069806 5069850 MADE1 96 + 51 95 210345 44 chain 104066 chr4 191154276 + 5090964 5092603 L1PA8A 6298 - 6 1318 35718 106 6 7 277 26 9 203 12 1 198 0 4 294 303 0 55 1 0 158 chain 14522 chr4 191154276 + 5094297 5094611 MSTA 426 - 45 419 142819 50 75 131 44 9 13 39 7 8 75 1 0 14 chain 24092 chr4 191154276 + 5095168 5095439 L1PA4 6152 + 5869 6141 109786 7 0 1 264 chain 26419 chr4 191154276 + 5108719 5109170 MER1A 529 + 0 495 98342 18 16 49 13 6 14 35 2 0 67 9 8 140 0 4 81 45 47 19 chain 25702 chr4 191154276 + 5115455 5115838 THE1B 368 - 0 368 101280 169 5 1 21 5 1 8 2 0 25 0 4 74 27 18 47 chain 5313 chr4 191154276 + 5129906 5129972 MLT1C 463 + 351 417 191893 66 chain 25036 chr4 191154276 + 5157261 5157618 THE1D 372 + 1 372 104616 132 1 5 24 25 36 142 1 0 32 chain 535610 chr4 191154276 + 5172035 5178162 L1PA4 6152 - 1 6138 3500 5 3 0 622 0 3 2234 0 1 47 1 5 23 0 1 778 0 3 980 0 1 212 7 5 272 0 1 460 1 2 346 14 14 122 chain 16906 chr4 191154276 + 5190546 5190749 L1PA6 6164 + 5961 6162 135833 193 2 0 8 chain 538286 chr4 191154276 + 5243301 5249447 L1PA4 6152 - 0 6151 3105 5 3 0 2654 0 4 23 1 0 767 0 5 106 6 0 325 5 11 2251 chain 36057 chr4 191154276 + 5250369 5250814 L1PA5 6144 + 5700 6140 74826 110 7 8 182 3 0 130 3 0 10 chain 80072 chr4 191154276 + 5252338 5253532 L1PA15 4387 - 260 1435 43555 22 2 1 167 6 5 39 5 3 6 0 3 54 16 14 158 0 1 163 26 0 161 8 13 58 14 13 27 21 20 37 0 3 57 0 2 72 1 2 74 chain 30785 chr4 191154276 + 5271851 5272298 MLT2A2 560 - 0 560 82889 54 0 1 4 1 0 32 10 11 45 2 111 122 1 0 4 8 12 164 chain 109950 chr4 191154276 + 5273134 5274319 L1PA2 6032 - 1406 2591 34149 1185 chain 130200 chr4 191154276 + 5274319 5275731 L1PA2 6032 + 4619 6032 28045 1253 0 1 159 chain 63881 chr4 191154276 + 5276152 5276921 LTR17 781 + 0 774 51062 119 0 9 175 10 0 24 0 1 6 0 5 435 chain 4972 chr4 191154276 + 5291098 5291171 Tigger3b 1229 - 388 453 195457 17 8 0 48 chain 456269 chr4 191154276 + 5294518 5300347 L1PA8 5853 - 4 5803 8534 88 6 5 10 0 1 4 2 1 27 6 5 13 8 7 9 1 0 69 2 0 46 1 0 168 0 2 306 0 1 10 0 1 65 3 1 326 1 2 348 5 20 297 0 1 351 7 6 265 3 0 44 0 4 405 4 8 165 0 3 115 0 3 149 0 2 516 1 0 247 14 0 209 0 1 359 0 2 6 0 1 69 0 2 96 15 8 330 0 6 9 6 0 300 40 0 8 1 45 169 64 25 6 1 0 10 2 0 22 chain 58872 chr4 191154276 + 5314025 5314680 L1PA3long 6157 - 8 661 53476 45 0 1 191 0 1 340 4 0 75 chain 2563 chr4 191154276 + 5319691 5319779 MER5A 189 + 100 189 232342 12 8 10 23 28 27 17 chain 307863 chr4 191154276 + 5334225 5337668 L1PA3long 6157 - 0 3464 13094 309 4 5 450 0 15 64 0 4 130 0 1 342 0 1 201 1 0 517 0 1 908 1 0 516 chain 14285 chr4 191154276 + 5343588 5343757 L1PA5 6144 - 14 183 143605 169 chain 37749 chr4 191154276 + 5343759 5344238 L1PA5 6144 + 5468 5945 72489 140 18 16 321 chain 53723 chr4 191154276 + 5344690 5345296 L1PA4 6152 - 12 618 56522 143 0 1 265 1 0 197 chain 3138 chr4 191154276 + 5384568 5384601 MIRb 242 - 114 147 222202 33 chain 4737 chr4 191154276 + 5400570 5400625 MER5A1 166 - 109 166 198091 13 0 2 42 chain 548177 chr4 191154276 + 5440342 5446355 L1PA2 6032 - 14 6032 1683 2878 0 2 1886 0 1 214 0 3 778 1 0 256 chain 28590 chr4 191154276 + 5481948 5482313 MER4E 760 - 8 358 90782 98 4 0 120 11 1 4 1 0 127 chain 534185 chr4 191154276 + 5482321 5488431 L1PA4 6152 - 11 6123 3689 840 1 0 1139 1 0 2704 4 5 216 0 1 674 1 0 20 0 1 208 0 1 34 0 2 261 1 0 6 chain 3193 chr4 191154276 + 5490054 5490091 tRNA-Gln-CAG 43 + 6 43 221068 37 chain 547393 chr4 191154276 + 5492304 5498425 L1PA3long 6157 - 0 6153 1780 85 0 1 60 6 7 537 4 0 1103 0 4 612 3 0 441 1 2 121 0 1 6 1 0 783 0 4 1680 0 1 375 0 3 153 0 24 150 chain 512628 chr4 191154276 + 5519912 5525829 L1PA4 6152 + 6 6145 5906 149 15 16 909 0 3 153 0 1 163 0 5 871 0 22 86 1 5 297 2 1 1253 0 1 1890 35 221 93 chain 41874 chr4 191154276 + 5547650 5548118 L1PA4 6152 + 5350 5818 66797 468 chain 30319 chr4 191154276 + 5548119 5548452 L1PA4 6152 + 5818 6151 83864 333 chain 127408 chr4 191154276 + 5551855 5553421 THE1B-int 1605 + 0 1600 28716 15 0 2 58 8 10 253 0 1 36 0 1 56 1 26 375 0 3 764 chain 24343 chr4 191154276 + 5553427 5553757 THE1B 368 + 3 346 108404 37 0 15 113 1 0 27 2 0 44 9 10 97 chain 18448 chr4 191154276 + 5562044 5562380 THE1D 372 - 38 372 131649 108 1 0 15 45 44 10 0 1 17 0 1 5 0 6 41 18 19 15 9 0 52 chain 17874 chr4 191154276 + 5572242 5572508 L1PB2 3958 + 3576 3838 133180 41 1 0 64 1 0 26 6 7 39 2 0 22 7 6 57 chain 36604 chr4 191154276 + 5588112 5588630 MER4B 649 + 4 576 74092 27 3 0 25 3 4 97 3 45 110 7 6 25 1 16 217 chain 32560 chr4 191154276 + 5589315 5589738 LTR2 463 - 12 461 79926 76 14 15 74 0 4 17 0 1 69 1 0 4 8 29 160 chain 550549 chr4 191154276 + 5595308 5601457 L1PA3long 6157 + 0 6157 1369 1060 0 2 8 0 1 210 0 2 1918 1 6 248 1 0 135 1 0 1717 1 0 842 0 1 7 chain 20876 chr4 191154276 + 5606575 5606904 Tigger2 2703 + 2273 2617 124377 47 9 0 9 0 9 35 3 0 144 14 27 16 6 10 26 1 2 19 chain 32120 chr4 191154276 + 5643513 5643978 L1PA8 5853 - 0 484 80651 75 0 1 17 3 2 15 7 6 39 6 5 14 1 0 71 2 0 33 6 11 160 1 20 15 chain 9875 chr4 191154276 + 5680837 5680964 Tigger3b 1229 - 321 448 161205 127 chain 13074 chr4 191154276 + 5681348 5681537 L1PA7 6471 - 3 198 147938 111 24 30 54 chain 30123 chr4 191154276 + 5694313 5694629 AluYb8 318 + 1 317 84406 316 chain 2933 chr4 191154276 + 5704283 5704316 MER3 215 + 45 78 226445 33 chain 2765 chr4 191154276 + 5704567 5704603 MIR 256 + 103 138 229231 7 1 0 28 chain 182481 chr4 191154276 + 5728297 5730296 L1PA2 6032 - 0 1999 20743 1999 chain 11133 chr4 191154276 + 5740619 5740790 Tigger1 2417 + 2187 2363 155689 29 11 10 21 1 4 27 0 3 82 chain 539012 chr4 191154276 + 5763641 5769655 L1PA3long 6157 - 7 6156 2989 7 0 3 131 1 2 1212 0 2 3628 8 11 250 8 136 20 6 7 734 3 0 6 chain 214441 chr4 191154276 + 5779575 5781918 L1PA3long 6157 - 8 2350 18198 771 1 0 1571 chain 4085 chr4 191154276 + 5781918 5781961 L1PA3long 6157 + 3757 3800 203551 43 chain 4538 chr4 191154276 + 5790540 5790617 MER30 238 + 0 106 200357 18 12 41 47 chain 19131 chr4 191154276 + 5824424 5824769 MER83 447 + 43 396 129741 7 24 0 49 27 52 29 7 3 132 13 24 57 chain 28924 chr4 191154276 + 5834886 5835192 AluYa5 310 - 4 310 89353 306 chain 18488 chr4 191154276 + 5843744 5843969 AluY 311 + 60 287 131536 72 0 1 6 3 4 144 chain 3254 chr4 191154276 + 5858470 5858576 HAL1-2a_MD 234 + 9 83 219927 5 3 0 8 18 0 5 3 0 23 0 3 5 1 0 4 3 0 8 7 0 13 chain 3048 chr4 191154276 + 5858920 5859081 HAL1-2a_MD 234 + 27 81 224044 15 11 0 26 96 0 13 chain 25021 chr4 191154276 + 5875060 5875464 MSTA 426 - 0 424 104679 56 5 0 118 1 0 4 27 31 20 7 9 55 1 0 4 0 21 7 1 2 5 1 0 92 chain 23171 chr4 191154276 + 5913497 5913801 AluSc 308 + 5 306 114806 248 6 5 20 2 0 28 chain 45045 chr4 191154276 + 5925464 5926012 MLT2A2 560 + 0 560 63000 203 0 1 202 0 11 143 chain 23702 chr4 191154276 + 5938010 5938314 AluSq 315 + 4 310 112021 129 9 11 166 chain 36629 chr4 191154276 + 5948111 5948643 LTR10E 629 + 5 584 74058 5 0 1 85 28 81 118 1 0 29 6 5 50 1 0 154 1 0 15 25 22 14 chain 6197 chr4 191154276 + 6005991 6006125 HAL1-2a_MD 234 - 83 234 183608 5 2 0 37 17 0 13 3 0 6 10 49 41 chain 6194 chr4 191154276 + 6017224 6017309 MER6A 605 + 38 124 183623 29 1 2 55 chain 12776 chr4 191154276 + 6028521 6028709 MER30 238 + 18 236 149153 9 0 18 27 0 2 23 13 20 79 0 3 37 chain 4371 chr4 191154276 + 6036196 6036247 MLT2D 439 + 23 77 202302 38 0 3 13 chain 32277 chr4 191154276 + 6059943 6060496 LTR10E 629 + 6 561 80397 5 1 0 72 1 0 29 7 6 22 1 2 22 0 2 62 1 3 63 7 6 126 82 83 52 chain 3154 chr4 191154276 + 6099031 6099082 Tigger4 2445 - 161 212 221871 17 1 0 10 1 2 22 chain 3103 chr4 191154276 + 6103173 6103255 L1MB7 1623 - 1112 1198 222866 30 23 24 11 2 5 16 chain 3396 chr4 191154276 + 6124536 6124604 MIR 256 + 57 121 217142 28 20 16 20 chain 20439 chr4 191154276 + 6135719 6136092 THE1D 372 + 0 372 125786 55 14 11 6 4 0 23 9 10 83 53 58 52 0 1 41 1 0 32 chain 5096 chr4 191154276 + 6172865 6172954 HAL1-2a_MD 234 + 93 225 194127 32 5 51 16 4 1 32 chain 9770 chr4 191154276 + 6180005 6180146 THE1C 375 + 1 142 161745 108 1 0 9 6 7 17 chain 41172 chr4 191154276 + 6186461 6187004 MLT2A2 560 + 1 560 67677 188 0 3 138 0 1 69 2 13 72 5 6 69 chain 44632 chr4 191154276 + 6194617 6195172 MLT2A2 560 + 0 560 63447 34 0 2 168 0 1 25 1 2 241 0 1 32 0 2 7 2 0 45 chain 32857 chr4 191154276 + 6248981 6249420 MLT2A1 477 - 0 477 79444 43 4 0 8 7 46 180 0 1 30 5 2 134 0 5 28 chain 14774 chr4 191154276 + 6310477 6310674 LTR12C 1709 - 494 939 142016 12 0 1 69 0 248 48 1 0 67 chain 44743 chr4 191154276 + 6312971 6313514 MER41A 554 + 0 547 63342 4 0 1 93 0 1 262 0 1 38 0 1 146 chain 5867 chr4 191154276 + 6357044 6357109 L1PA2 6032 - 162 227 186512 65 chain 13501 chr4 191154276 + 6357109 6357258 L1PA2 6032 + 5883 6032 146357 149 chain 133277 chr4 191154276 + 6359664 6361225 L1PA6 6164 + 4604 6161 27377 108 0 1 478 15 7 117 1 0 93 0 1 738 0 3 11 chain 5174 chr4 191154276 + 6509426 6509486 MLT1H 522 + 462 522 193306 60 chain 11154 chr4 191154276 + 6509852 6510015 MER50 708 + 0 168 155616 43 13 18 107 chain 3935 chr4 191154276 + 6513414 6513505 HAL1-2a_MD 234 - 151 230 208348 21 3 0 5 0 6 15 4 1 8 9 0 12 3 0 11 chain 2731 chr4 191154276 + 6513726 6513800 HAL1-2a_MD 234 - 112 171 229732 16 2 5 6 6 0 10 12 0 22 chain 5349 chr4 191154276 + 6513996 6514082 HAL1-2a_MD 234 - 6 168 191554 22 3 0 21 3 0 20 0 82 17 chain 21379 chr4 191154276 + 6530333 6530738 LTR7 482 + 0 479 122588 22 75 64 15 16 66 57 8 40 43 0 1 111 10 12 48 chain 2710 chr4 191154276 + 6539204 6539253 L1MB3 1562 + 1242 1290 230093 21 7 6 21 chain 2710 chr4 191154276 + 6587450 6587495 MLT1F1 559 - 159 205 230128 12 3 4 30 chain 3352 chr4 191154276 + 6603448 6603489 MER21C 908 - 816 857 218021 41 chain 40486 chr4 191154276 + 6633324 6633829 LTR31 607 + 102 607 68612 422 2 0 9 0 2 72 chain 212072 chr4 191154276 + 6637787 6640104 L1PA3long 6157 + 3839 6157 18356 120 0 1 681 1 0 1302 0 1 213 chain 13094 chr4 191154276 + 6640458 6640623 MER4A 717 - 541 717 147869 17 0 11 148 chain 24298 chr4 191154276 + 6647670 6648011 THE1C 375 + 0 375 108666 40 0 27 40 1 2 33 6 10 29 1 2 144 1 2 46 chain 132578 chr4 191154276 + 6656045 6657537 L1PA5 6144 + 4653 6143 27504 1338 2 0 152 chain 26247 chr4 191154276 + 6668248 6668538 AluYk4 311 - 10 300 99030 290 chain 27623 chr4 191154276 + 6668584 6668895 AluSp 311 - 0 311 94287 311 chain 101628 chr4 191154276 + 6674268 6675474 LTR12C 1709 + 0 1709 36364 542 0 1 208 0 17 14 0 366 76 0 4 88 3 5 85 0 11 11 0 102 179 chain 28944 chr4 191154276 + 6679769 6680087 AluYb8 318 - 5 318 89254 7 5 0 306 chain 3368 chr4 191154276 + 6715178 6715219 MLT1F1 559 - 139 180 217712 41 chain 23746 chr4 191154276 + 6715386 6715690 MER4A1 472 - 0 304 111801 189 5 0 6 0 5 104 chain 10292 chr4 191154276 + 6739308 6739436 L1MB3 1562 - 644 775 159168 120 0 3 8 chain 70124 chr4 191154276 + 6757607 6758404 SVA_D 2077 + 1236 2075 48341 66 0 49 37 0 1 4 19 17 656 6 0 9 chain 22155 chr4 191154276 + 6758993 6759288 AluSp 311 + 11 311 119570 41 0 3 61 0 1 113 8 9 72 chain 10142 chr4 191154276 + 6760170 6760355 MER30 238 - 3 199 159887 75 23 48 7 4 0 17 9 0 25 1 0 24 chain 24243 chr4 191154276 + 6793555 6793903 THE1B 368 + 9 368 108974 35 0 15 113 1 0 16 24 22 20 1 0 138 chain 13639 chr4 191154276 + 6822966 6823331 L1PB1 5432 - 5 333 145820 5 2 0 16 3 6 9 1 0 21 1 0 24 74 55 10 3 1 41 5 4 16 1 0 47 22 16 10 1 0 8 1 0 23 5 0 16 chain 59531 chr4 191154276 + 6824508 6825164 L1PA3long 6157 - 1 656 53088 622 1 0 33 chain 72808 chr4 191154276 + 6837196 6838066 L1PA6 6164 - 5 871 47121 7 6 0 155 1 0 685 1 0 4 0 1 4 0 3 7 chain 114982 chr4 191154276 + 6838274 6839672 SVA_B 1603 - 0 1603 32798 387 0 2 163 0 78 23 0 1 52 2 0 5 0 83 13 1 1 49 9 9 57 9 46 460 1 0 110 1 25 18 17 0 21 chain 33269 chr4 191154276 + 6879164 6879615 MLT2A1 477 - 0 477 78774 8 0 4 25 5 0 3 1 0 9 7 43 84 7 1 62 0 1 67 4 1 169 chain 38804 chr4 191154276 + 6879615 6880473 HERVL-int 5654 - 0 519 71014 68 0 3 132 350 0 21 0 2 11 1 4 44 0 4 18 3 0 122 0 1 57 0 1 31 chain 13759 chr4 191154276 + 6887162 6887371 HSMAR2 1300 - 1039 1257 145407 49 1 5 10 1 0 44 8 11 25 0 3 71 chain 25366 chr4 191154276 + 6898328 6898672 THE1C 375 - 20 366 102854 6 1 0 152 13 13 4 1 0 41 9 13 117 chain 23861 chr4 191154276 + 6938625 6938933 AluSp 311 - 12 301 111123 11 19 0 278 chain 22600 chr4 191154276 + 6951636 6951985 L1PA8 5853 - 0 344 117586 64 0 3 8 39 34 67 1 0 12 1 2 55 2 0 44 1 0 55 chain 28410 chr4 191154276 + 6955066 6955381 AluYf4 310 + 0 305 91540 118 10 0 187 chain 26857 chr4 191154276 + 6960616 6960911 AluYa5 310 - 17 310 96782 162 2 0 131 chain 13532 chr4 191154276 + 6974302 6974489 MER107 203 - 0 203 146236 22 1 0 4 0 7 18 1 7 31 0 1 4 1 0 10 0 4 95 chain 139054 chr4 191154276 + 6978803 6980483 SVA_D 2077 + 0 2077 26288 13 5 0 12 5 0 539 120 0 123 0 40 191 4 492 649 1 0 18 chain 7818 chr4 191154276 + 6979377 6979497 SVA_D 2077 + 604 760 166670 46 14 50 60 chain 24069 chr4 191154276 + 7066968 7067272 AluSp 311 + 9 307 109928 287 6 0 11 chain 27350 chr4 191154276 + 7082487 7082839 L1PA10 4194 - 51 397 95115 26 10 5 36 1 0 279 chain 41887 chr4 191154276 + 7086226 7086752 MER41A 554 - 5 554 66780 132 0 1 4 0 4 47 0 1 147 0 16 98 5 6 93 chain 78919 chr4 191154276 + 7086761 7087850 MER41-int 2638 - 2 1097 44095 164 0 1 4 2 1 54 0 5 137 0 2 37 3 5 163 1 0 104 7 0 54 2 0 27 2 0 9 12 13 148 36 37 84 0 7 39 chain 4810 chr4 191154276 + 7090248 7090342 MER41-int 2638 - 2468 2553 197238 10 1 0 8 0 1 39 18 9 18 chain 41998 chr4 191154276 + 7092861 7093388 MER41A 554 - 0 554 66627 108 0 5 98 1 0 4 0 1 21 0 22 295 chain 19108 chr4 191154276 + 7113890 7114126 7SK 245 - 0 245 129797 95 4 13 137 chain 111682 chr4 191154276 + 7216673 7217972 LTR12C 1709 + 0 1709 33753 650 0 278 183 1 0 6 2 0 107 0 4 264 0 131 86 chain 25100 chr4 191154276 + 7221158 7221519 THE1C 375 - 6 375 104292 135 5 7 23 26 31 69 0 1 103 chain 3675 chr4 191154276 + 7251026 7251216 MLT1G 592 - 298 514 212309 36 134 160 20 chain 82415 chr4 191154276 + 7259876 7260893 L1PA7 6471 - 3 1039 42579 9 3 0 182 0 2 113 0 1 22 1 0 285 8 25 16 0 5 98 1 0 89 1 0 189 chain 24104 chr4 191154276 + 7276046 7276449 MSTA 426 - 0 425 109723 113 2 1 67 47 45 38 0 4 10 28 49 98 chain 8365 chr4 191154276 + 7322881 7323092 L1PB3 3668 - 54 237 169043 15 7 4 14 1 0 12 9 5 35 3 1 14 15 13 19 23 7 44 chain 2402 chr4 191154276 + 7365716 7365859 HAL1-2a_MD 234 + 26 122 234203 12 1 49 15 95 0 20 chain 5010 chr4 191154276 + 7371066 7371123 THE1B 368 + 299 356 195026 57 chain 51000 chr4 191154276 + 7416179 7416827 LTR6A 649 - 0 649 58308 11 12 13 190 1 0 423 0 1 11 chain 3827 chr4 191154276 + 7471459 7471507 MER5B 177 + 129 177 209970 48 chain 13124 chr4 191154276 + 7485473 7485640 L1PA8 5853 + 5688 5853 147747 52 2 1 19 1 0 93 chain 123657 chr4 191154276 + 7603409 7604935 SVA_B 1603 - 13 1603 29825 539 0 1 47 0 78 63 0 40 70 0 40 156 3 0 21 80 0 339 1 0 151 4 3 23 10 0 19 chain 24158 chr4 191154276 + 7654977 7655261 AluSp 311 - 19 303 109441 284 chain 24199 chr4 191154276 + 7676024 7676329 AluY 311 + 0 311 109218 46 2 8 78 0 1 77 6 5 96 chain 4693 chr4 191154276 + 7724360 7724453 MLT1C 463 - 319 406 198596 4 1 0 16 6 0 14 15 16 37 chain 2487 chr4 191154276 + 7725961 7726042 HAL1-2a_MD 234 - 195 234 233257 13 30 0 14 12 0 12 chain 7993 chr4 191154276 + 7726171 7726630 HAL1-2a_MD 234 - 12 231 171103 22 18 0 14 3 40 20 12 1 7 19 0 8 193 0 23 13 4 26 8 2 19 22 4 17 3 0 12 chain 3558 chr4 191154276 + 7726300 7726437 HAL1-2a_MD 234 - 157 231 214385 32 73 13 17 3 0 12 chain 3183 chr4 191154276 + 7726725 7726758 HAL1-2a_MD 234 - 17 50 221272 33 chain 26447 chr4 191154276 + 7830593 7830926 THE1C 375 + 0 335 98246 180 0 1 6 1 0 17 0 2 129 chain 96662 chr4 191154276 + 7834355 7836224 L1PB1 5432 + 3941 5420 37654 40 9 5 47 7 5 47 6 1 58 0 12 348 1 4 112 9 6 13 0 1 102 0 1 62 2 10 95 347 38 155 49 11 24 1 0 5 4 3 10 2 0 3 2 0 8 2 0 53 2 1 15 1 0 41 29 6 11 16 3 28 31 26 19 2 1 20 1 0 13 1 0 16 chain 21289 chr4 191154276 + 7952872 7953232 THE1B 368 + 0 368 122904 15 2 0 21 1 6 89 5 1 40 3 2 24 43 53 117 chain 3202 chr4 191154276 + 7973233 7973270 MIRc 230 - 121 158 220902 37 chain 20758 chr4 191154276 + 7982972 7983306 MER4D1 891 + 541 884 124765 49 0 5 137 19 20 44 24 25 48 0 2 13 chain 63593 chr4 191154276 + 7995824 7996501 L1HS 6032 - 0 677 51188 677 chain 37183 chr4 191154276 + 7996501 7996900 L1HS 6032 + 4967 5366 73255 399 chain 3959 chr4 191154276 + 8013197 8013276 MIRb 242 + 99 181 207992 34 22 25 23 chain 35051 chr4 191154276 + 8054804 8055237 MER4A1 472 + 26 472 76115 124 3 16 306 chain 39460 chr4 191154276 + 8096029 8096492 LTR2 463 - 0 463 70073 463 chain 3183 chr4 191154276 + 8234577 8234616 MER5A 189 + 5 45 221237 30 0 1 9 chain 3598 chr4 191154276 + 8237535 8237574 MIRb 242 - 107 146 213673 39 chain 11180 chr4 191154276 + 8245552 8245686 MER41B 635 + 496 635 155516 53 0 5 81 chain 3994 chr4 191154276 + 8246549 8246600 MER51E 476 + 53 104 207479 51 chain 14061 chr4 191154276 + 8250183 8250341 MLT2A1 477 + 0 162 144348 15 0 4 143 chain 6519 chr4 191154276 + 8333879 8333963 MLT1A0 366 + 69 153 181094 84 chain 3004 chr4 191154276 + 8336925 8336959 MER63A 208 - 2 36 224966 34 chain 28968 chr4 191154276 + 8339394 8339698 AluYg6 310 - 6 310 89144 304 chain 28464 chr4 191154276 + 8356333 8356706 THE1C 375 - 0 375 91323 181 16 17 67 2 3 107 chain 42700 chr4 191154276 + 8360185 8360732 MER41A 554 + 0 554 65775 93 5 6 241 1 0 4 0 1 71 0 1 49 12 17 71 chain 156163 chr4 191154276 + 8362124 8365297 MER41-int 2638 + 85 2636 23839 18 18 9 39 357 42 20 3 1 17 7 7 10 1 0 5 8 2 10 5 0 26 4 0 31 44 43 43 1 0 22 369 40 20 0 4 58 0 1 94 26 14 18 1 0 78 57 67 75 1 0 140 9 19 155 0 1 112 1 2 123 6 16 42 1 0 161 6 7 100 3 4 95 2 0 35 2 0 64 0 4 31 7 0 18 0 2 30 5 8 13 1 2 143 0 2 40 0 2 44 16 31 62 0 5 117 0 4 103 chain 43160 chr4 191154276 + 8365306 8365849 MER41A 554 + 0 554 65218 99 0 2 18 0 2 197 1 0 4 0 1 10 0 3 70 1 5 143 chain 6801 chr4 191154276 + 8394769 8394853 5S 121 + 38 121 178943 9 1 0 74 chain 84083 chr4 191154276 + 8408128 8409127 LTR13 1007 - 0 1007 41864 194 0 3 99 2 0 327 2 3 294 0 6 81 chain 55156 chr4 191154276 + 8422091 8422854 LTR17 781 + 0 781 55611 59 1 0 97 1 0 22 16 15 79 1 0 4 8 9 42 1 0 355 15 37 62 chain 251523 chr4 191154276 + 8424127 8427314 HERV17-int 4347 + 1335 4347 16143 11 1 0 78 2 0 42 237 46 116 0 1 143 0 17 297 0 1 335 1 2 6 4 0 1661 1 4 252 chain 50185 chr4 191154276 + 8430907 8431465 LTR6B 557 - 0 557 58878 510 1 0 47 chain 8250 chr4 191154276 + 8435666 8435766 LTR2C 499 + 63 163 169683 100 chain 8262 chr4 191154276 + 8466622 8466780 L1PA16 3655 + 3421 3578 169618 26 2 1 22 36 36 72 chain 54701 chr4 191154276 + 8482438 8483186 MER4E1 777 + 2 756 55900 11 2 6 153 1 0 5 25 28 122 3 7 13 1 0 65 0 1 23 0 1 101 19 13 193 0 1 11 chain 38563 chr4 191154276 + 8484125 8484569 LTR7 482 - 0 482 71350 163 0 4 20 0 31 167 0 3 94 chain 312726 chr4 191154276 + 8485826 8489986 HERVH-int 3825 - 0 3825 12903 149 1 0 4 0 1 575 0 4 14 0 1 61 1 0 43 162 0 1287 0 5 41 0 3 39 54 5 37 0 1 318 23 8 192 0 1 193 1 4 60 1 0 59 42 0 47 84 0 17 1 0 7 21 0 14 0 31 24 1 0 10 1 0 39 5 0 198 1 0 307 1 0 6 0 1 19 chain 38376 chr4 191154276 + 8489988 8490436 LTR7 482 - 0 482 71606 93 0 3 94 0 31 261 chain 140128 chr4 191154276 + 8491971 8493700 LTR12C 1709 - 0 1709 26125 231 102 0 250 0 4 106 3 1 5 1 0 203 0 80 562 1 2 265 chain 3978 chr4 191154276 + 8497012 8497059 MIRb 242 - 127 174 207707 47 chain 8151 chr4 191154276 + 8499397 8499499 LTR61 567 + 443 544 170224 63 1 0 38 chain 15506 chr4 191154276 + 8500076 8500279 MSTA 426 - 23 223 139873 163 9 6 31 chain 22650 chr4 191154276 + 8568557 8568867 AluSc5 308 + 0 308 117325 52 10 5 51 0 1 148 7 9 42 chain 30822 chr4 191154276 + 8569169 8569694 PRIMA4_LTR 623 - 0 623 82834 69 6 8 80 28 111 80 0 1 6 21 11 43 13 36 131 19 18 29 chain 23315 chr4 191154276 + 8672637 8672981 THE1B 368 + 0 368 114128 44 0 15 113 1 0 26 35 45 125 chain 24448 chr4 191154276 + 8713399 8713685 AluY 311 + 11 299 107815 116 1 3 169 chain 19396 chr4 191154276 + 8745201 8745539 THE1B 368 + 0 349 128959 169 1 0 11 58 71 51 11 10 37 chain 6083 chr4 191154276 + 8756977 8757126 MER66B 489 + 279 431 184555 9 1 0 49 58 62 32 chain 36568 chr4 191154276 + 8759574 8760250 L1PB1 5432 + 4822 5420 74146 281 3 2 9 51 0 29 20 15 9 2 0 53 2 1 60 23 0 15 1 0 6 36 45 23 1 0 21 1 0 13 1 0 16 chain 6567 chr4 191154276 + 8843602 8843862 HAL1-2a_MD 234 - 42 209 180729 17 110 22 7 2 0 19 8 23 18 3 0 41 3 0 6 12 0 14 chain 3056 chr4 191154276 + 8855201 8855233 MLT1J 494 - 368 400 223881 32 chain 35644 chr4 191154276 + 8927799 8928270 MER4A1 472 + 0 472 75347 224 12 13 15 0 1 83 1 0 136 chain 200438 chr4 191154276 + 8932754 8936006 MER4-int 2692 + 7 2692 19179 4 1 0 26 2 0 62 1 0 8 0 1 10 5 0 145 312 0 61 0 6 108 0 5 215 0 1 55 5 4 52 8 21 39 1 0 141 0 3 250 314 0 292 0 1 305 25 64 59 0 1 60 8 7 255 1 0 17 3 5 160 1 0 231 0 1 10 chain 34550 chr4 191154276 + 8936345 8936816 MER4A1 472 + 0 472 76835 220 32 33 219 chain 348239 chr4 191154276 + 8944097 8948155 HERVE-int 4064 + 0 4064 11659 268 0 1 542 3 0 716 7 8 676 3 0 629 2 1 4 0 1 551 0 10 657 chain 82076 chr4 191154276 + 8957305 8958320 LTR5A 1029 + 0 1029 42732 134 0 13 312 0 1 569 chain 339745 chr4 191154276 + 8974740 8978812 HERVE-int 4064 + 0 4064 11905 287 7 0 470 12 12 44 4 1 16 5 4 697 3 4 570 1 0 101 0 1 132 0 2 171 2 0 195 0 1 116 0 7 328 6 4 54 1 0 5 0 1 24 4 5 149 6 4 71 1 0 408 1 0 108 1 0 72 chain 79654 chr4 191154276 + 8989127 8990152 LTR5A 1029 + 0 1029 43754 147 6 5 594 6 11 272 chain 99349 chr4 191154276 + 8993826 8995138 LTR12C 1709 - 0 1709 36941 86 1 0 62 1 0 333 11 4 6 1 0 100 4 2 4 1 0 44 0 360 241 1 4 39 4 5 38 0 43 77 1 2 29 13 15 215 chain 9558 chr4 191154276 + 9009684 9009835 L1MA8 2339 - 257 405 162788 73 1 0 37 15 14 4 1 0 20 chain 18198 chr4 191154276 + 9012891 9013152 L1PA8 5853 - 11 267 132334 82 1 0 19 2 1 51 11 10 69 6 4 20 chain 5001 chr4 191154276 + 9033573 9033741 L1MA7 2200 - 170 320 195123 19 84 65 18 4 5 43 chain 84226 chr4 191154276 + 9036142 9037177 LTR5A 1029 - 0 1029 41807 60 0 2 181 0 3 633 1 0 119 13 3 28 chain 29786 chr4 191154276 + 9037620 9038060 HERVK-int 6823 - 1245 1686 85528 51 5 4 9 1 0 13 0 1 4 19 19 4 1 0 198 0 3 105 4 3 4 0 1 22 chain 8944 chr4 191154276 + 9061148 9061274 LTR2 463 + 241 350 165901 47 17 0 62 chain 69066 chr4 191154276 + 9066123 9067192 MER11A 1151 - 17 1151 48778 59 7 11 43 2 0 5 9 4 17 15 17 57 0 1 36 18 0 22 42 25 132 20 21 140 5 6 94 0 1 149 4 0 63 0 4 62 1 100 34 2 0 31 chain 118591 chr4 191154276 + 9072110 9073853 HERVS71-int 4705 + 647 2302 31585 16 5 0 9 7 4 5 1 0 17 1 0 4 1 0 18 127 67 21 14 10 17 2 1 126 17 4 25 5 6 238 0 1 366 1 0 154 7 8 212 11 10 316 chain 47153 chr4 191154276 + 9077012 9077564 LTR6B 557 + 0 557 61085 368 0 5 184 chain 30357 chr4 191154276 + 9079113 9079531 MER4A1 472 - 11 437 83761 8 0 4 197 24 26 124 0 2 65 chain 514640 chr4 191154276 + 9082304 9088394 L1PA4 6152 + 0 6143 5712 157 9 10 413 0 3 5 6 3 276 0 27 342 0 1 185 0 5 132 0 2 512 0 3 83 0 1 19 0 2 139 1 0 767 1 0 429 1 0 424 0 1 329 8 11 76 1 3 885 0 5 61 0 1 72 1 0 25 0 3 731 chain 74987 chr4 191154276 + 9096478 9099638 HERVH-int 3825 + 0 3271 14285 219 6 7 107 1 0 143 0 114 13 17 49 4 1 0 40 2 1 17 83 0 5 0 1 9 2 1 26 1 2 21 1 0 394 0 1 886 4 0 32 6 11 299 1 49 820 chain 335949 chr4 191154276 + 9100748 9104831 HERVE-int 4064 + 0 4060 12001 23 0 1 637 0 1 4 1 0 146 1 2 627 0 1 4 1 0 87 26 1 672 0 1 7 1 0 156 3 5 1027 2 0 658 chain 42025 chr4 191154276 + 9107481 9107978 LTR2C 499 + 0 499 66593 110 0 1 66 1 4 76 1 0 184 1 0 58 chain 13146 chr4 191154276 + 9107978 9108532 HERVH-int 3825 + 3271 3825 14285 554 chain 88507 chr4 191154276 + 9123511 9124535 LTR5A 1029 + 0 1029 40181 150 1 0 23 5 7 90 0 1 509 0 3 246 chain 87171 chr4 191154276 + 9132070 9133093 LTR5A 1029 + 0 1029 40701 13 0 2 77 0 1 57 1 0 410 0 1 69 0 1 89 0 1 171 0 1 136 chain 32128 chr4 191154276 + 9134692 9135093 MER1A 529 + 41 441 80644 351 2 1 48 chain 94840 chr4 191154276 + 9145129 9146517 LTR12C 1709 + 0 1709 38135 21 14 22 230 13 22 7 9 0 36 18 61 12 0 1 6 1 0 46 7 5 15 26 6 160 0 278 143 0 47 97 44 13 313 1 0 86 1 0 82 chain 5357 chr4 191154276 + 9150770 9150887 MLT1C 463 - 296 400 191467 21 36 22 4 0 1 56 chain 89273 chr4 191154276 + 9178508 9179540 LTR5A 1029 - 0 1029 39896 260 16 0 614 1 14 141 chain 182049 chr4 191154276 + 9205776 9208187 L1PA8A 6298 + 3885 6290 20778 19 1 2 195 0 1 515 5 0 78 1 0 671 0 1 116 2 0 24 12 13 52 4 3 512 13 10 69 19 20 55 8 9 40 chain 45295 chr4 191154276 + 9386454 9387051 PRIMA4_LTR 623 + 0 623 62724 53 0 1 111 10 33 63 4 5 125 0 1 231 chain 11333 chr4 191154276 + 9411021 9411486 LTR12D 1347 - 170 758 154949 54 308 431 103 chain 7381 chr4 191154276 + 9411282 9411365 LTR12D 1347 - 824 907 174894 83 chain 4977 chr4 191154276 + 9411910 9411975 L1PBa1 4058 + 1010 1074 195400 44 1 0 20 chain 197147 chr4 191154276 + 9413762 9416404 L1PA8 5853 - 5 3833 19414 42 12 13 28 1 0 22 1 0 64 1 0 71 2 0 43 2 1 95 0 1 109 1 0 350 2 5 308 2 0 31 1 2 66 6 679 46 1 2 99 3 510 269 0 1 58 0 4 174 0 1 5 2 0 90 0 2 373 6 10 249 2 0 5 chain 5054 chr4 191154276 + 9433318 9433383 MER41A 554 - 88 157 194597 6 0 4 59 chain 5452 chr4 191154276 + 9444349 9444428 MADE1 96 - 0 95 190505 37 1 17 41 chain 341436 chr4 191154276 + 9453643 9457685 HERVE-int 4064 + 12 4064 11855 801 4 1 719 1 2 448 0 1 227 3 0 488 8 13 673 11 21 73 1 0 585 chain 82686 chr4 191154276 + 9466932 9467944 LTR5A 1029 + 0 1029 42469 134 0 13 687 0 3 13 0 1 178 chain 344604 chr4 191154276 + 9477959 9482015 HERVE-int 4064 + 0 4064 11770 813 4 1 15 0 1 241 0 1 461 1 2 675 3 0 88 0 1 333 0 1 764 0 10 70 1 0 587 chain 80840 chr4 191154276 + 9491331 9492346 LTR5A 1029 + 0 1029 43252 134 0 13 312 0 1 569 chain 321427 chr4 191154276 + 9508734 9512566 HERVE-int 4064 + 11 3844 12540 139 2 1 6 0 1 129 7 0 269 0 2 200 10 10 45 4 1 719 1 2 567 17 16 1278 0 10 70 1 0 368 chain 82716 chr4 191154276 + 9520501 9521531 LTR5A 1029 + 0 1029 42452 147 6 5 877 chain 106644 chr4 191154276 + 9525209 9526604 LTR12C 1709 - 0 1709 35083 82 1 0 66 1 0 333 11 4 6 1 0 100 8 165 99 0 118 269 1 4 82 0 43 40 14 15 22 1 2 155 0 1 103 chain 11760 chr4 191154276 + 9541132 9541292 L1MA8 2339 - 251 408 153218 79 1 0 55 2 0 23 chain 19009 chr4 191154276 + 9544296 9544562 L1PA8 5853 - 6 267 130090 87 1 0 19 2 1 61 10 9 60 6 4 20 chain 4375 chr4 191154276 + 9557860 9557911 MADE1 96 + 45 96 202253 51 chain 84998 chr4 191154276 + 9568937 9569963 LTR5A 1029 - 0 1029 41511 60 0 2 693 0 2 125 1 0 147 chain 31835 chr4 191154276 + 9570392 9570848 HERVK-int 6823 - 1240 1698 81114 56 5 4 9 1 0 13 0 1 4 11 10 8 0 1 4 1 0 168 0 1 29 0 3 105 4 3 4 0 1 34 chain 4101 chr4 191154276 + 9575836 9575884 L1MA4A 3247 - 1275 1323 205930 48 chain 9461 chr4 191154276 + 9593184 9593295 LTR2 463 + 248 359 163267 111 chain 73646 chr4 191154276 + 9597037 9598104 MER11A 1151 - 14 1151 46711 68 1 3 71 0 1 6 6 7 60 0 1 36 18 0 22 41 25 152 0 1 145 0 1 94 3 4 112 0 2 28 12 8 62 1 0 74 0 99 55 chain 45025 chr4 191154276 + 9601452 9602010 LTR6B 557 + 0 557 63027 147 1 0 156 0 1 5 3 2 246 chain 117999 chr4 191154276 + 9603489 9605181 HERVS71-int 4705 + 676 2302 31806 5 1 0 17 1 0 4 1 0 18 16 10 10 8 4 10 2 0 6 78 27 21 10 6 144 5 0 5 0 3 185 0 8 88 0 1 354 1 0 374 11 10 213 10 9 94 chain 45877 chr4 191154276 + 9608318 9608867 LTR6B 557 + 0 557 62146 368 0 5 71 0 3 110 chain 521701 chr4 191154276 + 9619232 9625703 L1PA4 6152 + 0 6143 4996 1048 0 1 666 310 0 133 0 1 467 5 0 297 0 1 556 0 1 42 0 1 7 0 1 271 0 4 281 0 1 161 0 1 246 0 1 385 0 2 90 1 0 266 0 1 361 29 1 714 0 1 125 1 0 9 chain 198918 chr4 191154276 + 9630526 9632832 L1PA4 6152 + 3842 6152 19285 506 0 4 312 7 8 447 1 0 4 0 1 260 1 0 92 1 2 176 0 1 491 2 0 6 chain 301074 chr4 191154276 + 9640948 9644727 HERVH-int 3825 + 0 3825 13370 20 6 1 312 1 0 140 2 1 9 0 56 31 2 1 9 1 0 10 4 0 15 45 0 13 1 0 13 24 0 17 46 65 10 0 1 4 1 0 31 12 13 7 1 0 319 0 2 949 18 14 29 0 5 305 1 49 635 0 3 736 chain 19825 chr4 191154276 + 9657307 9657537 AluY 311 + 15 245 127730 230 chain 89191 chr4 191154276 + 9659579 9660597 LTR5A 1029 + 0 1029 39933 8 0 4 138 1 0 615 0 2 178 0 6 78 chain 86810 chr4 191154276 + 9668148 9669174 LTR5A 1029 + 0 1029 40853 148 1 0 291 8 9 200 0 3 118 3 0 8 0 3 249 chain 24758 chr4 191154276 + 9680900 9681301 MER66B 489 + 28 448 106124 179 1 0 4 0 1 59 69 90 39 2 0 48 chain 90734 chr4 191154276 + 9681310 9682596 LTR12C 1709 + 0 1709 39380 21 0 9 8 7 5 295 9 52 22 0 1 51 15 13 13 20 0 160 0 278 143 0 47 95 24 0 11 11 4 212 0 101 86 1 0 82 chain 4694 chr4 191154276 + 9707322 9707390 MADE1 96 + 0 96 198585 23 4 32 41 chain 28642 chr4 191154276 + 9732153 9732562 LTR7 482 - 0 482 90551 91 0 1 23 1 2 75 0 32 30 3 4 109 23 61 54 chain 76601 chr4 191154276 + 9733397 9734315 LTR5_Hs 974 - 0 924 45160 512 0 4 396 0 2 10 chain 3973 chr4 191154276 + 9737710 9737756 MLT2A2 560 - 0 46 207796 46 chain 18678 chr4 191154276 + 9744848 9745150 THE1B 368 - 61 368 131003 53 39 41 12 0 3 29 1 0 59 6 7 103 chain 81147 chr4 191154276 + 9752676 9753689 LTR5A 1029 + 0 1029 43114 134 0 13 192 6 7 572 6 8 103 chain 226465 chr4 191154276 + 9762073 9764739 HERVE-int 4064 + 0 2666 17513 108 0 2 497 0 1 202 4 1 22 1 2 237 0 1 350 0 1 109 1 2 436 1 0 240 3 0 455 chain 5736 chr4 191154276 + 9788432 9788561 MER20 218 + 41 189 187771 42 24 25 28 15 33 20 chain 32927 chr4 191154276 + 9807748 9808233 MER9a3 513 + 0 513 79324 17 0 2 77 18 19 34 13 16 12 0 1 78 3 21 156 4 5 7 0 2 66 chain 24641 chr4 191154276 + 9822975 9823281 L1PA7 6471 + 6164 6469 106775 293 2 1 11 chain 39840 chr4 191154276 + 9830941 9831557 L1PA11 4918 + 3980 4567 69555 47 1 2 96 30 20 243 7 6 13 2 0 67 2 0 14 1 0 20 4 0 9 33 24 12 1 0 14 chain 3676 chr4 191154276 + 9832890 9832935 MLT1B 390 + 104 148 212288 30 1 0 14 chain 5290 chr4 191154276 + 9837339 9837423 L1PB1 5432 + 5199 5281 192117 21 2 1 14 2 1 45 chain 47624 chr4 191154276 + 9853594 9854532 L1PA15 4387 + 68 720 60752 54 0 30 65 2 1 32 1 0 118 315 1 351 chain 29304 chr4 191154276 + 9853868 9854175 AluYb8 318 - 11 318 87552 307 chain 43901 chr4 191154276 + 9860329 9860875 MLT2A2 560 + 2 550 64334 202 4 5 186 6 7 148 chain 3903 chr4 191154276 + 9866777 9866823 MER20 218 + 22 69 208800 11 0 1 35 chain 22560 chr4 191154276 + 9889613 9889885 L1PA7 6471 + 6182 6453 117761 49 0 1 75 3 1 145 chain 25245 chr4 191154276 + 9902247 9902620 THE1C 375 - 1 375 103503 77 16 18 80 15 13 7 0 2 95 0 1 68 2 0 13 chain 16170 chr4 191154276 + 9910185 9910368 L1PA5 6144 - 7 190 137840 183 chain 25393 chr4 191154276 + 9912465 9912774 L1PA7 6471 + 6153 6461 102723 162 1 0 146 chain 38022 chr4 191154276 + 9913502 9913925 L1PA4 6152 + 5729 6152 72092 423 chain 28699 chr4 191154276 + 9924870 9925386 LTR18B 584 + 0 510 90332 76 17 17 59 5 6 42 0 13 7 28 22 15 1 0 4 6 0 41 40 18 113 5 19 37 0 1 20 chain 46087 chr4 191154276 + 9936281 9936922 L1PA8 5853 - 0 638 61958 92 5 4 16 2 1 38 12 15 8 1 0 70 2 0 37 12 11 346 chain 21731 chr4 191154276 + 9952307 9952545 AluY 311 + 72 311 121272 60 0 1 178 chain 36825 chr4 191154276 + 9956405 9957354 MER50 708 + 57 685 73771 80 11 8 8 4 0 15 0 3 118 32 29 38 11 10 50 1 0 14 27 31 11 318 0 44 13 14 106 0 1 48 chain 24645 chr4 191154276 + 9959937 9960266 L1PA7 6471 + 6131 6461 106753 105 1 0 71 27 29 125 chain 35228 chr4 191154276 + 9972349 9972770 LTR2B 499 + 34 454 75886 37 1 0 383 chain 33466 chr4 191154276 + 9975112 9975482 L1PA4 6152 + 5768 6138 78467 370 chain 21401 chr4 191154276 + 10054602 10054861 AluY 311 + 31 288 122504 92 1 0 10 1 0 155 chain 6495 chr4 191154276 + 10057049 10057132 MER20 218 - 107 192 181300 20 0 5 5 3 0 55 chain 24444 chr4 191154276 + 10057274 10057624 THE1A 353 + 0 353 107837 110 1 0 8 19 23 86 0 1 6 2 1 118 chain 11216 chr4 191154276 + 10064501 10064720 L1MA5 2750 + 2412 2631 155362 43 18 13 68 0 2 24 1 0 6 37 41 22 chain 67236 chr4 191154276 + 10129010 10129928 LTR5_Hs 974 - 9 974 49551 55 5 0 6 1 15 16 0 11 8 10 1 19 10 19 43 0 4 68 0 2 134 0 2 276 0 1 137 0 2 50 5 7 36 0 3 11 1 5 16 0 7 11 chain 31086 chr4 191154276 + 10169701 10170173 MER9B 498 - 0 498 82372 4 1 0 65 5 12 35 1 0 5 28 41 120 0 3 51 1 0 46 3 6 68 0 4 30 1 0 8 chain 75853 chr4 191154276 + 10198637 10199658 L1PA7 6471 - 22 1077 45569 189 0 3 76 10 14 53 10 7 153 4 3 22 1 2 212 0 3 12 0 2 20 0 3 50 0 9 10 0 4 89 0 7 86 1 3 23 chain 82112 chr4 191154276 + 10248472 10249526 L1PA7 6471 - 16 1104 42721 90 0 3 101 0 2 81 0 1 38 9 11 45 0 4 89 0 3 47 0 1 216 3 5 40 0 3 12 0 4 40 0 5 8 1 5 234 chain 5371 chr4 191154276 + 10269240 10269331 MLT2B5 662 - 497 594 191303 39 15 21 37 chain 61001 chr4 191154276 + 10287858 10288537 L1PA3long 6157 - 1 682 52334 5 0 2 674 chain 31982 chr4 191154276 + 10298155 10298583 MER9B 498 - 0 498 80889 8 1 0 37 0 15 15 0 2 22 0 35 63 0 4 110 0 3 30 2 11 31 0 3 86 0 1 18 1 0 4 chain 22008 chr4 191154276 + 10310094 10310359 L1PA5 6144 + 5870 6144 120196 18 0 4 97 0 7 141 2 0 7 chain 101740 chr4 191154276 + 10332694 10333862 L1PA4 6152 - 18 1191 36333 309 7 8 535 0 4 317 chain 87022 chr4 191154276 + 10333862 10334848 L1PA4 6152 + 3951 4945 40688 83 0 4 316 0 4 316 1 0 116 6 7 148 chain 51524 chr4 191154276 + 10341573 10342326 L1PA8 5853 + 5057 5837 57947 35 0 10 59 14 17 195 1 4 144 7 13 30 1 0 6 0 3 36 2 0 9 1 6 54 2 1 12 2 1 48 2 1 19 1 0 49 0 4 24 chain 23154 chr4 191154276 + 10350350 10350653 L1PA7 6471 - 6 324 114876 94 13 15 27 0 13 169 chain 77239 chr4 191154276 + 10374253 10375180 L1PA5 6144 + 5191 6134 44854 103 1 0 98 4 7 232 1 0 33 0 1 146 0 3 175 0 7 92 0 4 42 chain 29417 chr4 191154276 + 10389335 10389661 L1PA4 6152 + 5819 6146 86997 190 0 1 136 chain 10670 chr4 191154276 + 10389890 10390061 THE1D 372 - 0 161 157529 56 1 6 25 25 10 64 chain 17162 chr4 191154276 + 10407245 10407499 MER41A 554 - 324 554 135137 41 21 1 99 6 0 5 0 1 9 0 1 73 chain 24607 chr4 191154276 + 10418848 10419220 THE1C 375 - 0 375 106958 30 8 0 18 1 0 119 17 20 49 0 4 90 9 14 31 chain 22860 chr4 191154276 + 10421080 10421394 MSTA 426 + 110 426 116284 126 2 0 9 9 8 43 0 5 125 chain 326239 chr4 191154276 + 10426054 10430156 L1P3 4156 - 17 4156 12337 23 19 16 101 2 1 31 4 8 126 7 0 302 1 3 34 1 0 47 1 0 146 0 1 406 0 3 186 0 4 56 30 18 5 0 1 103 0 2 84 0 1 173 1 0 96 0 5 551 9 6 105 0 3 310 1 11 75 0 4 38 3 33 5 1 0 363 1 0 29 5 6 101 0 1 30 6 1 82 1 2 81 2 1 67 2 1 40 0 2 42 1 0 32 0 1 134 chain 37919 chr4 191154276 + 10466379 10466993 L1PA11 4918 - 289 868 72252 18 47 33 11 2 0 13 1 0 15 31 22 9 4 0 20 1 0 13 2 0 84 1 0 64 1 0 277 chain 34492 chr4 191154276 + 10484051 10484521 MLT2A1 477 - 0 477 76920 37 29 41 14 4 0 181 0 1 20 0 1 12 4 1 169 chain 28089 chr4 191154276 + 10498285 10498662 MER51B 395 + 1 377 92688 93 4 4 147 7 6 126 chain 42076 chr4 191154276 + 10500526 10501038 LTR10D 510 + 0 510 66524 78 8 5 179 0 1 247 chain 20782 chr4 191154276 + 10503755 10504085 THE1D 372 - 0 341 124673 81 0 2 40 0 1 25 4 0 7 0 1 20 1 0 8 3 0 6 11 15 39 0 6 33 0 14 19 9 0 24 chain 9979 chr4 191154276 + 10512812 10512955 MER4B 649 + 476 619 160682 82 6 5 16 0 1 39 chain 48064 chr4 191154276 + 10515485 10516011 L1PA2 6032 - 6 530 60433 7 2 0 517 chain 38570 chr4 191154276 + 10576249 10576706 LTR2 463 + 0 463 71339 55 0 3 71 0 3 331 chain 41034 chr4 191154276 + 10581160 10581784 LTR9B 643 + 0 634 67854 134 0 1 66 6 5 125 1 0 91 53 62 18 6 10 6 1 0 79 0 5 6 6 0 26 chain 28657 chr4 191154276 + 10611669 10611967 AluYd8 298 - 0 298 90501 298 chain 2957 chr4 191154276 + 10639940 10639975 MER94 134 - 37 72 225923 35 chain 18534 chr4 191154276 + 10643346 10643709 THE1B 368 + 0 368 131414 108 8 9 52 1 0 6 0 3 6 67 70 52 17 16 46 chain 72769 chr4 191154276 + 10652408 10654995 L1PA7 6471 + 5545 6468 47140 78 3 0 77 0 2 159 0 2 311 1642 0 237 24 1 56 chain 13215 chr4 191154276 + 10654486 10654641 L1PA7 6471 + 5981 6136 147408 155 chain 25103 chr4 191154276 + 10675041 10675341 L1PA6 6164 + 5754 6053 104270 262 1 0 37 chain 13683 chr4 191154276 + 10676547 10676770 L1PA8 5853 + 5639 5848 145653 39 2 1 14 4 3 39 9 0 5 2 1 19 1 0 6 6 5 77 chain 170073 chr4 191154276 + 10680237 10682153 L1PA4 6152 + 4226 6152 22040 184 0 13 206 2 0 481 0 1 190 1 0 846 1 0 5 chain 15087 chr4 191154276 + 10708758 10708971 MER30 238 - 2 238 141067 107 4 23 41 4 8 57 chain 22043 chr4 191154276 + 10762786 10763131 THE1B 368 - 13 368 120055 112 35 45 29 1 0 43 18 19 107 chain 2752 chr4 191154276 + 10763196 10763235 MER20 218 - 137 177 229460 17 1 2 21 chain 550469 chr4 191154276 + 10777017 10783044 L1PA2 6032 - 1 6031 1380 467 1 0 1759 0 1 975 0 2 406 0 1 2164 1 0 26 0 1 228 chain 37968 chr4 191154276 + 10788227 10788689 L1PA7 6471 - 1 463 72178 153 3 0 5 1 4 300 chain 9808 chr4 191154276 + 10795399 10795523 MER50 708 - 23 147 161556 124 chain 28316 chr4 191154276 + 10795537 10795933 L1PBa 3878 - 758 1163 91881 71 0 1 16 6 5 26 12 21 265 chain 178870 chr4 191154276 + 10797923 10800392 L1PB1 5432 + 2956 5420 21086 659 0 14 95 4 8 199 0 1 30 0 1 81 1 0 6 0 2 167 0 1 397 6 5 83 0 2 105 6 5 286 7 6 5 1 0 13 10 13 6 1 0 10 17 11 11 0 1 41 20 18 42 1 0 12 27 16 19 12 9 10 2 0 24 1 0 20 2 1 13 1 0 16 chain 477054 chr4 191154276 + 10825652 10830946 L1PA2 6032 - 1 6020 7830 12 2 0 141 0 5 7 5 0 231 0 743 277 7 0 1054 2 1 2843 7 0 461 5 4 240 chain 24802 chr4 191154276 + 10833083 10833415 THE1C 375 + 0 336 105882 121 20 24 191 chain 9097 chr4 191154276 + 10847773 10847910 MLT1A0 366 + 226 366 165084 89 13 15 4 0 1 31 chain 29098 chr4 191154276 + 10863653 10863964 AluYb8 318 - 7 318 88565 311 chain 23732 chr4 191154276 + 10866448 10866739 AluY 311 + 8 298 111872 110 2 0 14 0 1 10 0 3 7 3 0 145 chain 27702 chr4 191154276 + 10940614 10941000 THE1C 375 + 0 375 94036 15 2 0 38 5 1 131 6 2 162 1 0 26 chain 58734 chr4 191154276 + 10946266 10947021 MER4E1 777 - 8 777 53565 169 0 5 25 20 28 417 1 0 11 4 5 12 0 1 96 chain 22934 chr4 191154276 + 10949001 10949334 THE1B 368 - 20 364 115940 55 1 0 101 2 0 23 1 0 6 2 1 51 2 3 44 5 20 40 chain 7729 chr4 191154276 + 11002914 11003040 Tigger3b 1229 - 127 239 172721 95 4 0 6 10 0 11 chain 3572 chr4 191154276 + 11010386 11010433 MLT1G1 539 - 238 282 214112 21 3 0 23 chain 204499 chr4 191154276 + 11016918 11019146 L1PA2 6032 - 0 2229 18887 859 0 1 1369 chain 5079 chr4 191154276 + 11032673 11032827 L1MA8 2339 + 1931 2081 194301 26 2 0 9 65 64 12 1 0 39 chain 342899 chr4 191154276 + 11044869 11049401 L1P2 5180 - 2 4546 11811 4 1 0 39 6 5 41 13 12 412 1 0 30 3 0 277 12 16 1087 12 15 30 0 1 55 1 2 302 5 17 43 0 4 16 0 1 449 1 0 494 1 2 363 29 28 327 10 11 138 0 2 6 1 0 151 7 22 37 21 0 8 0 3 25 5 0 69 chain 548124 chr4 191154276 + 11062539 11068562 L1PA2 6032 - 0 6020 1690 626 0 2 231 0 1 2910 0 1 1562 7 0 417 0 1 25 1 0 244 chain 50844 chr4 191154276 + 11078869 11079441 L1PA3long 6157 - 0 579 58402 12 0 3 133 3 7 424 chain 57041 chr4 191154276 + 11079441 11080081 L1P1 4361 + 3047 3687 54506 640 chain 24951 chr4 191154276 + 11083829 11084173 THE1B 368 + 0 348 105053 13 2 0 27 0 5 127 5 4 15 1 4 98 1 0 55 chain 21500 chr4 191154276 + 11102817 11103087 AluSp 311 + 38 305 122145 87 2 0 9 1 0 171 chain 24047 chr4 191154276 + 11103504 11103782 L1PA5 6144 - 3580 3857 109559 250 2 1 26 chain 298071 chr4 191154276 + 11103782 11107258 L1PA5 6144 + 2590 6140 13528 411 0 75 281 6 7 677 0 1 118 8 7 930 0 1 196 8 7 682 0 2 34 1 0 4 3 0 117 chain 78372 chr4 191154276 + 11124257 11125273 L1PA7 6471 - 454 1479 44336 206 0 1 108 0 2 76 0 3 340 0 1 153 15 17 118 chain 540396 chr4 191154276 + 11145247 11151265 L1PA3long 6157 - 5 6148 2756 2384 12 8 2854 10 138 615 0 1 143 chain 332475 chr4 191154276 + 11169794 11173438 L1PA2 6032 - 0 3639 12112 770 1 0 294 3 0 1198 0 1 726 3 1 649 chain 33026 chr4 191154276 + 11173440 11173802 L1PA2 6032 + 2029 2391 79177 362 chain 3209 chr4 191154276 + 11188710 11188764 Tigger3c 601 + 456 540 220759 13 7 37 34 chain 3291 chr4 191154276 + 11213617 11213656 MADE1 96 - 2 41 219156 39 chain 552062 chr4 191154276 + 11236841 11242878 L1PA2 6032 + 0 6026 1186 131 10 0 2438 1 0 3457 chain 134236 chr4 191154276 + 11247382 11249007 L1PA7 6471 - 1 1647 27161 333 0 1 339 0 23 153 1 0 265 1 2 31 0 1 373 6 1 7 0 1 116 chain 41990 chr4 191154276 + 11272672 11273227 MLT2A2 560 - 0 560 66641 77 1 0 238 7 12 29 6 7 197 chain 70485 chr4 191154276 + 11318324 11319193 THE1B-int 1605 - 5 874 48172 869 chain 32798 chr4 191154276 + 11319790 11320193 THE1A-int 1579 + 0 407 79535 15 0 2 7 2 3 67 0 1 312 chain 40802 chr4 191154276 + 11371260 11371717 L1PA2 6032 - 809 1263 68167 290 4 1 163 chain 60828 chr4 191154276 + 11371718 11372373 L1PA2 6032 + 5229 5884 52416 655 chain 12824 chr4 191154276 + 11372373 11372513 L1PA2 6032 + 5891 6031 148956 140 chain 32713 chr4 191154276 + 11376700 11377147 LTR7B 505 + 0 490 79664 105 0 10 60 15 22 28 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 2 1 48 chain 554837 chr4 191154276 + 11380364 11386394 L1PA2 6032 - 0 6030 842 5495 1 0 272 0 1 262 chain 30336 chr4 191154276 + 11389616 11389933 AluYb8 318 + 0 317 83815 317 chain 4494 chr4 191154276 + 11405438 11405503 MIRb 242 + 75 142 200847 10 1 0 47 0 3 7 chain 15998 chr4 191154276 + 11421019 11421265 L1PA8 5853 + 5608 5853 138352 71 1 0 11 11 12 6 0 1 31 2 1 19 1 0 93 chain 20301 chr4 191154276 + 11439294 11439530 L1PA5 6144 - 5 241 126228 236 chain 22213 chr4 191154276 + 11453744 11454014 AluSc 308 + 4 274 119286 270 chain 18853 chr4 191154276 + 11473011 11473273 AluSz 310 + 41 304 130506 98 23 24 141 chain 17991 chr4 191154276 + 11478465 11478798 L1PA14 3548 + 3131 3452 132885 6 1 0 4 0 1 12 2 1 64 1 0 113 1 0 11 4 0 36 4 2 12 39 36 23 chain 217908 chr4 191154276 + 11500506 11502987 L1PA5 6144 - 4 2489 18008 133 0 7 10 7 0 178 1 2 547 0 1 203 0 1 1126 1 2 275 chain 21188 chr4 191154276 + 11505396 11505639 L1PA5 6144 + 5900 6144 123250 89 0 1 154 chain 18325 chr4 191154276 + 11519033 11519386 MSTA 426 + 0 395 131997 106 1 0 4 12 38 55 64 61 32 5 25 74 chain 29274 chr4 191154276 + 11520919 11521267 L1PA7 6471 - 7 355 87673 348 chain 29426 chr4 191154276 + 11542609 11542916 AluYb8 318 - 11 318 86959 307 chain 547683 chr4 191154276 + 11559071 11565207 L1PA3long 6157 + 2 6157 1744 2244 0 1 1705 0 5 271 0 8 118 0 4 1040 6 7 752 chain 488190 chr4 191154276 + 11579442 11585141 L1PA4 6152 - 1 6132 7432 85 3 0 27 0 1 425 0 444 307 0 1 619 1 0 733 1 0 1225 0 1 378 0 3 658 1 0 80 0 3 116 20 23 188 17 0 258 1 0 556 chain 135823 chr4 191154276 + 11644182 11645851 L1PA7 6471 - 6 1672 26875 6 2 0 136 0 1 515 0 1 103 5 3 734 1 2 8 3 1 156 chain 306593 chr4 191154276 + 11656848 11660480 HERVH-int 3825 - 0 3825 13149 258 1 2 550 1 0 142 0 2 400 0 14 677 0 1 223 0 1 672 0 3 101 0 1 13 0 2 6 0 1 27 6 13 17 2 1 42 30 175 77 0 9 62 1 0 272 0 9 52 chain 27824 chr4 191154276 + 11660482 11660878 LTR7 482 - 0 482 93608 158 0 9 6 0 4 10 1 32 29 6 10 23 1 0 6 0 1 79 6 44 71 chain 8348 chr4 191154276 + 11672012 11672116 Tigger3c 601 + 342 446 169134 104 chain 37268 chr4 191154276 + 11678510 11679057 L1PA8 5853 - 0 542 73140 91 3 2 19 2 1 41 6 0 7 1 5 8 1 0 71 2 0 44 1 0 102 0 2 81 5 6 62 chain 43533 chr4 191154276 + 11679058 11679658 L1PA8 5853 + 4660 5286 64762 35 10 31 227 0 1 55 26 28 47 1 3 199 chain 28480 chr4 191154276 + 11687501 11687868 THE1B 368 - 0 368 91261 75 1 0 99 1 3 191 chain 3758 chr4 191154276 + 11695348 11695670 MLT1G3-int 901 + 619 892 210995 16 130 138 41 120 63 15 chain 71674 chr4 191154276 + 11696612 11697395 L1PA2 6032 - 4 801 47615 494 0 14 289 chain 16378 chr4 191154276 + 11725113 11725310 LTR12F 595 - 0 197 137265 197 chain 6155 chr4 191154276 + 11725310 11725378 LTR12_ 688 + 620 688 183200 68 chain 5331 chr4 191154276 + 11756712 11756769 L1PA3long 6157 + 6100 6157 191721 57 chain 542513 chr4 191154276 + 11794384 11800376 L1PA2 6032 + 1 6032 2421 254 2 1 108 0 1 2131 0 58 1939 20 0 1376 0 1 162 chain 33982 chr4 191154276 + 11800439 11800822 L1PA3long 6157 + 5774 6157 77641 383 chain 28919 chr4 191154276 + 11807907 11808367 LTR7 482 + 0 482 89372 69 29 17 15 15 14 109 8 40 25 0 1 129 12 14 49 chain 296984 chr4 191154276 + 11808369 11811942 HERVH-int 3825 + 0 3825 13588 425 1 0 106 7 2 37 2 1 9 1 0 24 1 52 41 1 0 82 1 0 1436 3 2 853 9 11 39 8 218 487 chain 23537 chr4 191154276 + 11835111 11835399 L1PA8A 6298 - 57 349 112924 93 0 1 177 0 3 18 chain 42305 chr4 191154276 + 11853089 11853564 L1PA4 6152 - 799 1274 66263 475 chain 68428 chr4 191154276 + 11853565 11854330 L1PA4 6152 + 5373 6138 49072 765 chain 13990 chr4 191154276 + 11856733 11856922 MER30 238 + 34 236 144610 69 8 21 112 chain 83768 chr4 191154276 + 11919686 11920665 LTR12C 1709 + 611 1709 42000 39 0 119 68 1 0 275 1 0 4 4 2 106 0 4 481 chain 38929 chr4 191154276 + 11925781 11926243 L1PA7 6471 - 490 954 70830 356 1 3 105 chain 39432 chr4 191154276 + 11926243 11926732 L1PA7 6471 + 5976 6470 70116 166 2 3 34 0 2 274 1 3 12 chain 18716 chr4 191154276 + 11934200 11934410 L1PA4 6152 - 189 399 130909 210 chain 13366 chr4 191154276 + 11934410 11934577 L1PA4 6152 + 5985 6152 146827 167 chain 39929 chr4 191154276 + 11949184 11949717 MER41A 554 - 0 554 69424 242 0 24 39 4 0 33 11 12 204 chain 46516 chr4 191154276 + 11952538 11953091 MER41A 554 + 0 554 61585 314 0 1 239 chain 12051 chr4 191154276 + 11961567 11961708 L1PA7 6471 - 4 146 151978 62 0 1 79 chain 306366 chr4 191154276 + 11961877 11965915 L1P2 5180 - 2 3945 13159 4 1 0 39 1 0 48 1 0 9 0 2 71 5 20 78 0 1 205 23 2 35 1 2 156 1 0 4 6 12 310 10 11 245 3 0 217 9 7 4 0 1 216 5 6 301 1 2 442 0 1 306 0 15 199 110 0 972 chain 8863 chr4 191154276 + 11964833 11964943 L1P2 5180 + 1396 1506 165046 110 chain 75962 chr4 191154276 + 11980736 11981783 MER11C 1089 + 0 1063 45505 247 7 16 54 6 10 59 1 0 147 46 45 108 5 9 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 22696 chr4 191154276 + 11997236 11997534 AluSp 311 + 1 303 117094 108 1 2 27 4 7 158 chain 66297 chr4 191154276 + 11997977 11998938 MER11A 1151 - 5 1151 49953 70 0 6 35 4 5 35 16 17 29 0 2 6 31 85 20 0 26 111 0 3 158 0 1 16 6 1 76 13 15 135 13 9 57 1 0 74 0 99 55 chain 119449 chr4 191154276 + 12021190 12022558 L1PA4 6152 + 4776 6143 31247 46 0 1 1180 4 2 138 chain 10020 chr4 191154276 + 12043474 12043605 MER85 139 - 0 138 160483 40 0 10 83 3 0 5 chain 80266 chr4 191154276 + 12063533 12064440 L1PA4 6152 + 5243 6152 43485 38 0 1 861 0 1 8 chain 549418 chr4 191154276 + 12091606 12097745 L1PA3long 6157 + 0 6157 1528 59 1 2 1027 0 2 716 0 1 64 0 1 46 4 5 1218 0 3 925 0 1 1234 0 4 564 0 3 277 0 1 4 chain 2764 chr4 191154276 + 12108351 12108414 L1ME1 1623 - 106 161 229257 18 22 14 23 chain 49337 chr4 191154276 + 12121686 12122300 PABL_A 660 + 25 651 59496 11 0 3 43 1 10 371 0 6 5 6 0 177 chain 391542 chr4 191154276 + 12156795 12161717 L1PA7 6471 - 7 4960 10403 610 0 2 14 0 1 216 2 1 135 0 1 263 0 1 292 2 10 246 0 4 119 1 0 5 0 2 21 0 5 511 0 3 300 1 0 4 0 1 6 0 1 66 0 1 15 1 0 35 0 3 73 15 13 585 6 10 189 1 3 65 16 7 214 0 1 132 4 5 109 0 4 299 1 2 348 chain 24664 chr4 191154276 + 12217670 12218005 L1PA8 5853 + 5511 5853 106646 53 1 0 45 2 0 73 1 0 4 4 17 37 5 4 16 1 0 93 chain 4560 chr4 191154276 + 12218800 12218865 MLT1B 390 - 19 83 200107 53 2 1 10 chain 99914 chr4 191154276 + 12225308 12226424 L1PA4 6152 - 9 1129 36808 883 0 4 233 chain 6971 chr4 191154276 + 12229807 12229933 L1MA3 4352 - 44 168 177676 19 9 13 17 5 3 21 4 0 51 chain 120265 chr4 191154276 + 12265633 12266996 L1PA4 6152 - 1 1369 30956 843 0 4 18 0 4 149 4 0 36 0 1 313 chain 42284 chr4 191154276 + 12300201 12300746 MLT2A2 560 - 0 556 66293 145 4 15 396 chain 55157 chr4 191154276 + 12301385 12302126 MER4E1 777 - 7 777 55610 204 0 4 11 2 1 11 4 9 35 1 5 66 0 7 157 0 12 231 2 0 17 chain 9661 chr4 191154276 + 12315357 12315556 L1PA15 4387 + 4164 4348 162298 20 2 1 14 7 3 15 1 0 50 11 8 39 3 1 11 7 3 19 chain 3083 chr4 191154276 + 12335772 12336167 L1PA5 6144 + 5410 5805 56947 395 chain 531716 chr4 191154276 + 12336189 12342227 L1PA3long 6157 + 4 6156 3997 148 0 1 84 0 15 515 9 137 1226 34 5 2544 1 0 1477 chain 2623 chr4 191154276 + 12342241 12342577 L1PA5 6144 + 5805 6141 56947 336 chain 367325 chr4 191154276 + 12344647 12348678 L1PA2 6032 + 2000 6032 11174 8 1 0 875 0 1 2292 1 2 854 chain 314246 chr4 191154276 + 12365893 12369641 HERVH-int 3825 + 0 3825 12839 49 0 1 332 0 4 89 0 56 39 2 1 8 2 1 24 1 14 15 0 38 26 1 0 12 48 6 35 5 6 11 0 2 9 0 1 777 0 1 96 0 4 1324 3 0 6 0 3 235 0 1 599 chain 24246 chr4 191154276 + 12370902 12371291 LTR7 482 + 0 470 108961 69 8 46 109 8 40 42 12 18 53 3 7 31 17 18 37 chain 4763 chr4 191154276 + 12387568 12387620 MLT2A2 560 - 0 52 197786 52 chain 211788 chr4 191154276 + 12388590 12391232 HERVL-int 5654 - 2970 5614 18374 779 0 1 293 0 2 172 0 1 308 10 4 440 0 1 4 1 2 182 0 1 117 0 1 262 12 12 62 chain 13840 chr4 191154276 + 12412222 12412557 THE1B 368 + 1 343 145098 107 127 135 63 17 16 21 chain 10814 chr4 191154276 + 12422424 12423605 MER4A 717 + 0 703 156921 117 1012 534 52 chain 44621 chr4 191154276 + 12427326 12427884 LTR10F 562 - 0 556 63458 17 9 10 304 3 0 74 1 0 56 0 1 94 chain 132922 chr4 191154276 + 12428282 12430491 HERVIP10FH-int 2884 - 904 2735 27439 54 0 17 122 35 26 18 0 6 15 22 10 40 130 76 128 6 1 22 0 1 38 1 0 7 1 0 12 13 7 176 7 5 90 0 1 61 0 1 421 1 0 227 3 0 136 305 0 54 5 0 59 chain 43900 chr4 191154276 + 12432737 12433276 LTR10F 562 - 6 562 64335 257 3 1 67 3 0 28 6 28 175 chain 49752 chr4 191154276 + 12433948 12434665 MER4E1 777 + 0 769 59190 25 6 0 93 0 17 36 0 3 158 1 20 39 0 9 26 0 1 6 0 1 107 1 9 32 13 0 9 21 34 144 chain 19850 chr4 191154276 + 12446880 12447236 THE1B 368 - 2 368 127653 47 17 17 72 4 3 10 17 19 22 9 8 103 6 21 36 5 0 8 chain 60376 chr4 191154276 + 12460808 12461578 LTR17 781 + 2 773 52643 119 0 9 196 0 1 41 5 6 248 0 12 83 22 0 56 chain 7997 chr4 191154276 + 12462222 12462324 LTR7 482 + 316 419 171083 49 1 2 52 chain 537828 chr4 191154276 + 12462972 12469096 L1PA4 6152 + 51 6151 3178 198 4 0 785 1 0 210 1 0 1076 1 0 598 0 2 345 0 2 2550 0 1 164 29 4 34 0 1 108 0 2 20 chain 97173 chr4 191154276 + 12479315 12480504 L1PA7 6471 + 5260 6452 37517 87 0 2 272 1 0 217 0 1 430 0 2 50 6 5 126 chain 105527 chr4 191154276 + 12492088 12493265 L1PA4 6152 + 4635 5812 35365 1177 chain 28141 chr4 191154276 + 12493265 12493593 L1PA4 6152 + 5813 6141 92496 328 chain 210093 chr4 191154276 + 12510451 12512758 L1PA2 6032 - 0 2315 18494 1967 0 4 10 1 5 329 chain 15600 chr4 191154276 + 12522675 12522967 THE1B 368 - 62 368 139583 63 5 19 10 1 5 9 31 25 40 29 31 104 chain 5541 chr4 191154276 + 12541538 12541599 THE1C 375 + 269 330 189654 61 chain 3075 chr4 191154276 + 12543455 12543494 HERV16-int 1105 - 677 715 223455 5 1 0 33 chain 206159 chr4 191154276 + 12598974 12601819 L1PA10 4194 + 1320 4161 18779 200 26 25 66 5 6 60 13 10 80 2 1 178 0 1 554 16 16 12 4 4 11 0 4 81 0 1 20 1 0 11 1 0 42 30 33 23 0 3 546 8 2 144 0 6 589 0 1 12 22 15 40 11 8 25 1 0 11 chain 31439 chr4 191154276 + 12611075 12611496 LTR12C 1709 + 0 464 81750 265 7 9 16 5 6 42 0 43 48 3 0 35 chain 44053 chr4 191154276 + 12616216 12616769 MER41A 554 - 0 554 64152 81 0 5 219 4 0 249 chain 17750 chr4 191154276 + 12638822 12639057 THE1B 368 - 0 234 133565 54 10 8 4 0 1 167 chain 177376 chr4 191154276 + 12654860 12656828 L1PA3long 6157 + 4186 6156 21216 1179 0 1 691 4 5 94 chain 2684 chr4 191154276 + 12673238 12673304 Tigger2b_Pri 1066 - 999 1064 230395 13 23 22 30 chain 12154 chr4 191154276 + 12704113 12704417 L1PB1 5432 + 5121 5404 151593 17 1 0 4 35 28 50 21 19 41 1 0 16 1 0 4 19 8 18 16 20 24 1 0 21 1 0 13 chain 18073 chr4 191154276 + 12731803 12732145 THE1B 368 - 12 366 132667 44 7 6 57 6 21 14 40 37 42 25 27 12 1 0 94 chain 32042 chr4 191154276 + 12742093 12742497 L1PA6 6164 + 5752 6160 80796 217 0 12 35 8 0 144 chain 9455 chr4 191154276 + 12742517 12742695 MER30 238 - 0 198 163292 71 6 0 7 6 12 21 4 21 23 13 16 27 chain 57454 chr4 191154276 + 12744932 12745645 L1PA7 6471 - 12 722 54264 54 2 0 83 0 7 7 18 11 133 1 0 415 chain 542714 chr4 191154276 + 12749896 12755915 L1PA3long 6157 + 2 6156 2387 434 3 1 143 0 4 7 0 2 188 0 128 2357 0 4 414 6 5 2467 chain 22333 chr4 191154276 + 12760923 12761231 THE1B 368 + 0 307 118761 159 16 15 133 chain 17141 chr4 191154276 + 12779929 12780179 L1PA8 5853 + 5544 5787 135199 18 1 0 48 2 0 68 2 1 9 1 0 52 2 1 19 1 0 27 chain 4108 chr4 191154276 + 12798369 12798414 U5 65 + 3 48 205791 45 chain 29713 chr4 191154276 + 12804806 12805121 AluYb8 318 + 0 314 85786 132 1 0 182 chain 26482 chr4 191154276 + 12830275 12830680 MLT2A1 477 + 0 477 98113 142 0 1 26 1 5 17 31 32 77 0 1 56 7 73 28 1 0 19 chain 118924 chr4 191154276 + 12833259 12834789 THE1B-int 1605 - 11 1577 31446 830 8 0 7 0 9 70 0 3 217 0 25 321 7 10 28 0 4 42 chain 32273 chr4 191154276 + 12841825 12842212 L1P3 4156 - 1227 1626 80402 219 0 10 64 2 4 102 chain 65975 chr4 191154276 + 12842212 12842956 L1PA7 6471 + 5719 6461 50113 599 3 0 133 0 1 9 chain 24036 chr4 191154276 + 12856105 12856459 THE1C 375 - 0 370 110132 25 1 0 12 1 2 113 7 10 19 21 33 138 0 1 17 chain 30918 chr4 191154276 + 12877926 12878273 L1PA2 6032 - 0 346 82654 256 1 0 90 chain 545472 chr4 191154276 + 12905055 12911077 L1PA3long 6157 + 4 6157 2016 149 1 2 438 0 2 181 0 128 345 1 0 4680 0 1 227 chain 38157 chr4 191154276 + 12945423 12945962 L1PA8 5853 - 0 529 71900 63 0 1 24 6 5 19 3 2 42 4 0 6 25 23 58 2 0 46 1 0 240 chain 27477 chr4 191154276 + 12978120 12978488 THE1B 368 - 0 368 94726 118 9 12 39 2 0 31 1 0 168 chain 86961 chr4 191154276 + 12985833 12987019 L1PA8 5853 - 3 1547 40798 90 5 4 15 2 1 27 1 2 29 1 0 74 2 0 46 6 5 70 4 397 33 0 4 46 0 1 318 0 1 184 47 11 186 chain 69913 chr4 191154276 + 12987033 12987973 L1PA8 5853 + 3375 4323 48428 96 52 48 122 0 1 4 1 0 13 6 2 288 1 3 54 0 14 303 chain 3174 chr4 191154276 + 12999470 12999503 MLT1H 522 + 360 393 221445 33 chain 35407 chr4 191154276 + 13023644 13024074 L1PA7 6471 + 6039 6464 75671 96 1 0 177 4 0 152 chain 32679 chr4 191154276 + 13025852 13026282 MER57A1 433 - 0 433 79721 149 0 2 74 10 0 8 0 11 189 chain 4960 chr4 191154276 + 13068873 13068935 MIR 256 - 136 198 195581 62 chain 4003 chr4 191154276 + 13086833 13086981 MER5A 189 - 21 105 207350 33 18 17 25 63 0 9 chain 52126 chr4 191154276 + 13093066 13093882 L1PB1 5432 + 4621 5404 57541 482 6 5 6 1 0 21 1 0 6 0 1 4 1 0 12 4 0 11 6 4 47 18 16 44 1 0 16 3 0 6 16 6 11 12 9 4 1 0 14 2 0 24 1 0 21 1 0 13 chain 6903 chr4 191154276 + 13113834 13114126 MADE1 96 + 2 96 178160 44 200 2 48 chain 219444 chr4 191154276 + 13132813 13135218 L1PA3long 6157 - 0 2407 17923 13 0 1 2198 0 1 194 chain 172798 chr4 191154276 + 13135632 13138312 L1PA10 4194 + 175 2810 21734 13 2 0 9 3 0 10 2 0 9 11 7 9 2 0 8 99 69 4 1 0 22 2 0 20 77 73 59 2 0 202 15 16 179 6 7 4 1 0 82 2 0 503 29 32 246 2 1 143 0 1 537 95 96 127 1 2 40 0 3 102 chain 17599 chr4 191154276 + 13142296 13142512 THE1D-int 1627 + 1406 1622 134002 171 1 0 18 0 1 26 chain 21790 chr4 191154276 + 13142517 13142906 THE1D 372 + 0 372 121065 61 35 16 86 0 2 16 9 12 12 0 36 10 38 0 89 1 0 32 chain 26844 chr4 191154276 + 13180801 13181152 MLT2A1 477 - 99 462 96831 55 1 0 111 0 9 8 1 0 21 1 5 23 4 5 126 chain 3949 chr4 191154276 + 13186081 13186130 MADE1 96 - 47 96 208145 49 chain 76758 chr4 191154276 + 13186954 13187885 L1PA7 6471 - 10 940 45102 139 3 0 8 7 8 404 6 8 273 1 0 90 chain 85678 chr4 191154276 + 13195774 13196721 L1PA4 6152 + 5193 6143 41280 559 0 3 388 chain 26744 chr4 191154276 + 13218295 13218668 L1PA8 5853 + 5485 5853 97182 69 0 1 11 1 0 42 2 0 29 0 1 40 22 20 44 3 2 16 1 0 93 chain 32438 chr4 191154276 + 13228206 13228612 HERVL-int 5654 + 5246 5654 80135 185 1 2 22 0 1 198 chain 24274 chr4 191154276 + 13228612 13228985 MLT2A1 477 + 0 407 108821 139 28 51 134 1 0 24 24 36 23 chain 20815 chr4 191154276 + 13233575 13233860 THE1C-int 1605 - 0 285 124556 58 1 0 4 7 8 215 chain 12103 chr4 191154276 + 13233938 13234184 L1PB3 3668 + 768 1008 151784 84 31 17 17 0 1 41 21 22 19 13 19 20 chain 25461 chr4 191154276 + 13248734 13249007 AluYa5 310 + 38 308 102409 94 3 0 176 chain 159016 chr4 191154276 + 13273075 13274942 L1PA7 6471 + 4601 6470 23461 511 0 1 162 1 0 6 0 1 339 1 0 676 1 2 44 1 4 111 2 0 12 chain 31618 chr4 191154276 + 13289694 13290167 L1PA15 4387 - 2681 3177 81455 5 1 0 130 21 32 46 2 1 11 0 3 172 15 26 70 chain 28026 chr4 191154276 + 13302684 13303063 THE1C 375 - 0 375 92907 26 1 0 235 0 1 59 10 7 20 1 0 27 chain 73127 chr4 191154276 + 13312593 13313752 L1PA13 3608 + 2439 3546 46962 247 12 2 88 4 0 257 1 0 38 0 3 56 30 21 9 1 0 36 1 2 75 2 1 5 1 0 57 6 5 21 1 0 29 1 0 5 2 0 47 9 5 20 1 0 15 1 3 11 18 7 15 0 1 5 9 1 9 1 0 1 2 0 10 chain 24370 chr4 191154276 + 13322887 13323173 L1PA7 6471 - 16 302 108260 286 chain 26088 chr4 191154276 + 13328525 13328899 L1PA8 5853 + 5485 5853 99676 35 0 1 41 1 0 48 2 0 54 28 26 50 2 1 19 1 0 93 chain 3531 chr4 191154276 + 13334704 13334753 MER51A 677 + 199 344 214866 15 0 96 34 chain 77682 chr4 191154276 + 13335593 13336452 L1PA4 6152 - 1392 2251 44226 859 chain 121536 chr4 191154276 + 13336452 13337808 L1PA4 6152 + 4788 6146 30525 6 0 3 581 1 0 768 chain 8205 chr4 191154276 + 13345342 13345444 L1MB3 1562 + 783 885 169925 102 chain 183817 chr4 191154276 + 13391404 13393712 L1PA5 6144 + 3853 6132 20606 77 1 2 15 1 0 135 5 6 41 0 1 308 8 0 106 2 1 113 18 30 643 7 8 699 55 20 74 chain 15084 chr4 191154276 + 13402948 13403163 L1PA7 6471 + 6257 6469 141073 50 2 0 5 5 8 141 4 0 8 chain 4076 chr4 191154276 + 13404347 13404394 MER58B 340 - 8 55 206255 47 chain 213057 chr4 191154276 + 13407632 13410198 L1PA7 6471 - 7 2561 18293 15 1 0 739 0 1 92 0 3 62 1 0 137 8 0 460 1 0 150 0 2 87 13 4 203 0 3 95 1 2 409 1 0 55 1 0 35 chain 93179 chr4 191154276 + 13416846 13418109 LTR12C 1709 + 0 1709 38606 55 0 1 36 3 8 114 0 2 15 47 49 17 0 1 116 0 25 25 24 10 175 0 280 142 0 47 95 0 3 8 13 6 166 0 102 129 1 0 82 chain 510238 chr4 191154276 + 13418392 13424541 L1PA6 6164 + 0 6162 6141 63 1 2 156 0 1 266 18 14 285 0 17 453 2 0 526 0 1 429 0 2 104 0 1 5 0 1 477 6 5 382 5 1 745 0 1 166 5 6 41 0 1 520 1 2 6 1 0 112 0 1 16 9 11 101 0 2 570 0 4 314 2 0 207 0 1 136 11 0 8 chain 35972 chr4 191154276 + 13429464 13429915 LTR2 463 - 0 463 74923 18 0 1 89 0 1 140 0 5 79 0 3 46 0 2 79 chain 4993 chr4 191154276 + 13502927 13502992 MLT1D 503 - 25 90 195216 65 chain 66299 chr4 191154276 + 13557616 13558496 L1PA5 6144 - 0 944 49949 35 9 0 7 0 9 87 0 1 618 99 162 25 chain 22660 chr4 191154276 + 13561769 13562131 THE1D 372 - 13 372 117275 19 1 0 106 42 50 72 1 0 54 10 1 57 chain 16112 chr4 191154276 + 13563360 13563734 MSTD 398 - 0 390 138019 71 6 10 29 110 130 12 20 0 27 0 12 99 chain 22383 chr4 191154276 + 13627690 13627967 AluSc 308 + 0 303 118568 24 3 29 250 chain 8407 chr4 191154276 + 13635382 13635586 MER44B 551 - 286 514 168810 32 14 13 34 66 91 58 chain 18775 chr4 191154276 + 13651293 13651537 L1PA7 6471 + 6224 6464 130757 27 6 0 16 0 2 44 0 1 138 1 0 12 chain 22194 chr4 191154276 + 13659855 13660120 AluY 311 + 29 295 119376 96 1 2 168 chain 357450 chr4 191154276 + 13662876 13666879 L1PA3long 6157 - 15 6157 11416 694 1 0 51 1 0 12 0 1 2114 0 4 343 20 2155 615 0 1 152 chain 32713 chr4 191154276 + 13667988 13668501 LTR3B_ 500 + 0 493 79665 78 1 0 254 11 0 11 57 45 19 0 2 5 7 9 70 chain 10176 chr4 191154276 + 13677674 13677803 L1PB4 2604 - 85 218 159738 49 0 4 80 chain 4897 chr4 191154276 + 13679952 13680064 MER89 557 - 414 507 196293 8 20 0 28 17 18 39 chain 16772 chr4 191154276 + 13684027 13684218 L1PA7 6471 + 6281 6470 136192 27 2 0 162 chain 4169 chr4 191154276 + 13699102 13699151 MER81 114 - 33 82 204985 49 chain 118371 chr4 191154276 + 13701143 13702906 L1PREC2 3366 - 326 2050 31657 30 10 8 31 37 20 14 1 2 13 23 17 17 29 21 12 3 0 5 1 0 41 8 7 50 10 8 31 5 0 443 1 2 47 8 9 207 5 6 234 0 2 21 1 2 149 1 0 275 chain 20333 chr4 191154276 + 13710217 13710462 L1PA6 6164 - 4 245 126124 163 6 0 41 0 2 35 chain 41109 chr4 191154276 + 13732702 13733248 MLT2A2 560 + 0 560 67761 212 0 1 113 0 1 4 7 6 65 0 11 52 0 1 17 6 7 70 chain 450394 chr4 191154276 + 13740759 13746756 L1PA8 5853 - 9 5748 8754 44 4 0 39 2 1 17 1 0 48 2 1 15 1 0 69 2 0 48 1 0 38 0 16 40 304 0 376 0 9 73 2 0 210 0 1 43 7 4 15 4 0 304 0 5 205 0 1 216 0 1 86 0 3 111 0 9 203 0 1 588 1 2 40 0 4 76 1 0 343 0 4 166 13 5 11 0 1 68 6 10 255 0 1 113 0 9 346 0 4 207 0 11 316 1 2 261 29 30 86 2 1 106 3 4 219 12 0 198 chain 13674 chr4 191154276 + 13747483 13747647 THE1B 368 - 188 368 145697 104 0 1 16 0 15 44 chain 149643 chr4 191154276 + 13756038 13758312 L1PB1 5432 - 10 2266 24667 19 0 2 9 1 0 22 1 0 24 2 0 14 9 6 14 23 12 6 1 0 14 1 0 43 1 0 11 11 10 49 2 0 9 16 11 9 1 0 24 1 0 6 6 5 371 0 1 97 9 6 149 0 4 119 1 0 24 0 1 4 1 0 43 0 5 110 1 0 92 53 55 57 0 3 6 45 44 149 24 27 570 chain 132150 chr4 191154276 + 13762308 13763765 SVA_D 2077 - 214 2077 27605 418 0 226 116 0 185 905 5 0 13 chain 357232 chr4 191154276 + 13770882 13776288 L1PB1 5432 - 76 5063 11426 10 2 0 11 11 8 18 20 9 4 1 0 14 2 1 44 19 17 44 111 73 51 1 0 5 0 1 113 1 4 39 1 0 75 32 12 34 5 6 9 2 0 133 11 7 408 0 1 217 9 11 21 4 5 201 25 23 345 1 2 16 0 1 203 0 13 138 1 0 52 21 19 48 0 2 46 1 0 6 1 0 55 0 1 255 0 1 24 2 0 116 1 0 252 5 6 370 1 0 36 322 16 49 29 0 237 7 8 13 25 2 20 5 3 6 0 2 200 17 14 76 0 1 216 4 7 237 6 12 57 1 0 147 1 0 4 1 2 22 chain 24678 chr4 191154276 + 13780290 13780621 THE1A 353 - 0 329 106566 233 11 10 81 1 0 5 chain 126240 chr4 191154276 + 13780671 13782240 THE1A-int 1579 - 17 1579 29023 374 0 1 32 2 0 63 5 0 587 4 3 6 0 2 5 2 0 489 chain 27619 chr4 191154276 + 13782240 13782589 THE1A 353 - 0 353 94297 243 2 1 69 0 5 35 chain 497847 chr4 191154276 + 13800603 13806184 L1PA3long 6157 + 0 6156 6964 152 0 1 553 7 0 62 8 136 551 0 454 417 1 0 960 0 1 2865 1 0 4 chain 29297 chr4 191154276 + 13813850 13814244 MER41B 635 + 0 382 87589 125 4 5 219 13 0 33 chain 4704 chr4 191154276 + 13821623 13821680 MLT1C 463 + 67 124 198479 57 chain 24294 chr4 191154276 + 13844623 13845003 THE1D-int 1627 + 27 511 108686 10 1 0 59 19 20 163 11 13 43 11 113 63 chain 24670 chr4 191154276 + 13858662 13858968 L1PA8A 6298 - 7 314 106608 53 0 1 253 chain 154673 chr4 191154276 + 13926770 13928472 L1PA3long 6157 - 15 1718 24021 5 0 1 1697 chain 62298 chr4 191154276 + 13980890 13981597 L1PA5 6144 + 5433 6142 51751 6 0 2 701 chain 3341 chr4 191154276 + 14001740 14001782 MIR 256 + 169 211 218205 42 chain 85586 chr4 191154276 + 14006946 14007878 L1PA3long 6157 - 10 942 41312 932 chain 554532 chr4 191154276 + 14011078 14017110 L1PA2 6032 - 0 6032 884 4237 0 1 882 1 0 912 chain 3544 chr4 191154276 + 14020127 14020166 MADE1 96 - 1 40 214652 39 chain 22456 chr4 191154276 + 14054278 14054560 L1PA7 6471 + 6176 6459 118217 5 0 1 66 3 4 63 1 0 144 chain 46724 chr4 191154276 + 14057427 14057957 L1PA4 6152 + 5612 6143 61434 11 0 1 519 chain 57010 chr4 191154276 + 14058313 14059039 L1PA7 6471 - 3 719 54523 7 2 0 11 0 1 60 0 4 18 16 0 412 0 3 200 chain 14600 chr4 191154276 + 14075072 14075430 MSTA 426 + 0 405 142592 56 2 1 43 8 13 20 113 118 42 14 52 60 chain 4748 chr4 191154276 + 14101694 14101748 MLT2B1 522 + 367 421 197945 54 chain 37253 chr4 191154276 + 14114281 14114726 L1PA8A 6298 - 7 455 73165 112 0 1 305 0 2 28 chain 51737 chr4 191154276 + 14142019 14142605 L1PA5 6144 + 5553 6139 57797 440 3 4 129 1 0 13 chain 37977 chr4 191154276 + 14171577 14172023 LTR7 482 - 6 482 72163 180 0 31 11 1 0 254 chain 259075 chr4 191154276 + 14173839 14177147 HERVH-int 3825 - 0 3825 15749 487 8 218 31 0 3 638 21 18 714 4 31 59 3 8 40 0 5 103 1 0 29 18 9 478 0 5 170 1 0 68 67 1 13 1 0 11 2 0 30 14 11 14 11 40 4 1 0 7 1 0 10 1 0 31 2 1 8 1 0 52 0 324 154 chain 38058 chr4 191154276 + 14177149 14177600 LTR7 482 - 0 482 72048 187 1 32 263 chain 55252 chr4 191154276 + 14192660 14193308 L1PA7 6471 - 1 652 55554 21 0 3 627 chain 20891 chr4 191154276 + 14200425 14200681 AluSc5 308 + 21 278 124316 191 1 2 64 chain 546869 chr4 191154276 + 14208723 14214868 L1PA3long 6157 - 0 6156 1845 850 1 2 121 0 1 1936 6 7 921 1 0 828 0 1 44 1 0 26 0 9 713 0 1 608 2 1 87 chain 5629 chr4 191154276 + 14219095 14219165 MLT1A 405 + 63 133 188771 70 chain 9818 chr4 191154276 + 14230852 14231202 MSTD 398 - 18 398 161502 35 209 214 13 0 25 93 chain 8732 chr4 191154276 + 14232839 14232946 MER30 238 - 0 105 167014 100 2 0 5 chain 19599 chr4 191154276 + 14245614 14245972 THE1A 353 + 1 353 128385 62 0 9 7 11 7 21 4 3 97 44 35 76 12 11 24 chain 36836 chr4 191154276 + 14264129 14264598 HSMAR1 1287 - 14 486 73757 355 6 9 108 chain 3173 chr4 191154276 + 14317966 14318027 MER58A 224 + 6 83 221510 13 14 30 34 chain 49099 chr4 191154276 + 14321931 14322828 L1PB1 5432 + 4567 5430 59670 54 1 0 80 0 2 100 36 38 230 13 12 15 5 4 11 1 0 25 1 0 6 1 0 14 18 12 50 2 1 10 8 7 43 19 15 17 9 0 13 50 44 22 6 5 7 1 0 14 2 0 8 1 0 4 chain 96022 chr4 191154276 + 14332080 14333639 L1PB1 5432 - 10 1520 37814 18 1 0 13 1 0 21 1 0 13 101 76 45 18 16 7 8 0 45 2 0 7 85 58 184 0 1 210 2 3 34 7 9 28 1 5 20 13 17 83 0 5 540 0 2 4 1 0 46 chain 32269 chr4 191154276 + 14342627 14343057 MLT2A1 477 - 8 477 80407 49 0 35 62 1 0 117 12 12 21 1 5 27 0 1 140 chain 15707 chr4 191154276 + 14346992 14347252 THE1D 372 + 47 329 139242 21 1 11 50 1 5 54 24 26 24 4 10 81 chain 100219 chr4 191154276 + 14360107 14361437 LTR12C 1709 + 0 1700 36715 188 7 9 80 4 5 56 0 43 165 1 8 141 0 278 98 0 47 97 20 13 23 1 0 56 5 6 308 5 4 75 chain 77476 chr4 191154276 + 14399259 14400121 L1PA4 6152 - 0 864 44749 8 1 0 789 0 3 64 chain 20824 chr4 191154276 + 14414602 14414890 L1PA8 5853 + 5572 5853 124524 36 2 0 70 19 16 46 2 1 19 1 0 93 chain 533594 chr4 191154276 + 14422181 14428284 L1PA4 6152 - 0 6146 3754 8 0 1 208 0 1 120 1 2 155 0 1 244 1 2 55 0 3 42 0 4 235 9 1 233 1 0 117 1 14 209 0 4 91 2 0 375 0 1 860 0 1 844 0 1 1609 0 8 547 0 14 136 chain 37648 chr4 191154276 + 14434146 14434627 L1PA8 5853 + 5378 5853 72626 186 2 1 43 2 0 76 1 0 60 1 0 18 1 0 91 chain 12810 chr4 191154276 + 14455100 14455242 L1PA2 6032 + 5890 6032 149015 142 chain 6739 chr4 191154276 + 14462384 14462469 L1PA13 3608 - 344 430 179408 55 0 1 30 chain 297442 chr4 191154276 + 14472828 14476165 L1PA4 6152 - 16 3356 13556 250 2 0 418 5 1 313 0 5 224 0 1 998 0 1 235 0 3 521 1 0 370 chain 549024 chr4 191154276 + 14482375 14488451 L1PA2 6032 + 2 6032 1575 740 1 0 1318 0 2 559 0 1 516 0 3 1028 51 0 1863 chain 10094 chr4 191154276 + 14505329 14505456 L1PA15 4387 - 1315 1442 160114 127 chain 6395 chr4 191154276 + 14529719 14530066 Ricksha_c 1012 + 36 297 182070 19 105 52 40 1 0 5 22 17 30 16 11 10 38 27 17 27 16 17 chain 429860 chr4 191154276 + 14541010 14546839 L1PA8A 6298 + 546 6291 9310 131 12 11 101 1 0 108 0 84 64 2 0 81 3 0 9 7 8 53 0 8 26 4 2 389 1 0 6 0 1 35 6 5 812 0 4 18 0 1 252 0 4 204 0 1 40 1 16 55 1 2 197 2 0 79 1 2 4 1 0 299 0 1 210 3 0 6 1 0 4 0 12 45 18 23 266 0 4 63 6 8 37 1 2 87 23 23 702 0 1 13 31 32 129 0 4 78 0 1 84 0 6 74 1 0 276 219 0 119 22 16 134 0 1 172 chain 8961 chr4 191154276 + 14549585 14549691 L1P3 4156 - 4040 4146 165819 106 chain 82971 chr4 191154276 + 14549706 14550737 L1PA7 6471 + 5465 6469 42349 127 22 1 89 0 1 622 13 7 4 1 0 153 chain 42031 chr4 191154276 + 14550764 14551269 L1PA7 6471 + 5706 6213 66582 430 0 1 16 6 7 53 chain 20866 chr4 191154276 + 14551269 14551519 L1PA7 6471 + 6214 6464 124404 250 chain 17918 chr4 191154276 + 14556598 14556793 L1PA2 6032 + 5835 6030 133061 195 chain 6684 chr4 191154276 + 14567863 14567953 Tigger5 388 - 0 89 179802 64 1 0 25 chain 7670 chr4 191154276 + 14600466 14600560 MER47A 366 - 168 262 173105 94 chain 20799 chr4 191154276 + 14608789 14609142 THE1D 372 + 25 360 124604 51 19 0 106 26 31 25 9 10 6 0 1 65 6 0 40 chain 13469 chr4 191154276 + 14625236 14625397 L1PA6 6164 - 2 161 146451 9 2 0 150 chain 20268 chr4 191154276 + 14625406 14625626 L1PA6 6164 + 5763 5983 126322 220 chain 20386 chr4 191154276 + 14634993 14635349 THE1B 368 + 0 364 125943 93 19 18 48 6 5 34 45 55 111 chain 551882 chr4 191154276 + 14661920 14667950 L1PA2 6032 - 0 6032 1205 17 0 1 2970 0 1 1536 0 1 1250 6 5 251 chain 25998 chr4 191154276 + 14674863 14675237 THE1C 375 - 0 375 100026 24 4 5 164 0 1 58 1 0 32 14 0 11 5 19 61 chain 33950 chr4 191154276 + 14685906 14686273 L1HS 6032 - 0 367 77694 367 chain 24044 chr4 191154276 + 14701213 14701533 L1PA8 5853 + 5539 5853 110090 25 1 0 44 2 0 70 2 1 61 2 1 19 1 0 93 chain 23885 chr4 191154276 + 14707404 14707767 THE1D 372 + 0 372 110993 15 0 2 38 9 0 76 1 5 52 23 21 29 0 6 27 0 9 60 1 0 32 chain 22458 chr4 191154276 + 14716577 14716824 L1PA5 6144 + 5891 6138 118210 247 chain 489912 chr4 191154276 + 14720307 14726480 L1PA7 6471 + 38 6470 7371 95 22 25 31 0 1 4 1 0 209 3 0 7 5 7 98 7 8 243 1 0 4 0 1 181 0 215 586 0 1 141 0 1 138 0 1 307 1 2 287 0 3 252 0 4 194 0 1 377 0 2 22 0 1 89 1 8 243 0 1 202 22 18 445 0 30 249 0 3 210 2 1 447 6 7 24 38 0 135 0 4 18 1 0 79 2 3 165 0 16 481 0 5 86 0 2 12 chain 83633 chr4 191154276 + 14729035 14729975 L1PA4 6152 + 5212 6152 42058 229 0 1 694 3 0 8 0 2 6 chain 4587 chr4 191154276 + 14730164 14730247 L1PB4 2604 - 94 174 199777 51 16 13 16 chain 118212 chr4 191154276 + 14735011 14736587 THE1A-int 1579 - 0 1579 31724 65 0 1 362 2 1 479 17 15 11 11 12 64 1 4 105 8 9 4 1 0 8 0 1 5 1 0 130 1 2 301 chain 23914 chr4 191154276 + 14736587 14736937 THE1A 353 - 0 347 110842 18 3 0 5 1 4 128 1 0 73 8 6 6 0 2 17 1 0 46 0 1 34 2 0 7 chain 5838 chr4 191154276 + 14739157 14739232 L1PREC2 3366 + 1725 1798 186790 37 1 0 9 1 0 27 chain 22447 chr4 191154276 + 14755099 14755457 THE1C 375 - 0 375 118264 86 6 6 85 15 9 6 0 4 33 28 47 99 chain 565112 chr4 191154276 + 14756738 14762768 L1HS 6032 + 2 6032 200 6030 chain 30116 chr4 191154276 + 14798155 14798718 L1PB1 5432 + 4884 5391 84430 188 9 0 24 36 18 16 18 16 10 2 0 3 2 0 10 3 1 50 2 1 16 1 0 44 1 0 15 3 0 14 9 0 17 27 22 21 1 0 21 chain 36760 chr4 191154276 + 14799167 14799615 THE1A-int 1579 + 1128 1579 73863 329 0 2 54 0 1 65 chain 11227 chr4 191154276 + 14808016 14808174 MER2 342 + 96 259 155318 19 5 10 134 chain 6191 chr4 191154276 + 14809775 14809852 MER107 203 + 120 203 183649 53 0 6 24 chain 5466 chr4 191154276 + 14819106 14819254 L1PA16 3655 - 36 164 190348 15 48 26 54 9 11 22 chain 129261 chr4 191154276 + 14841194 14842645 L1PA3long 6157 + 4709 6151 28251 367 9 1 821 1 0 253 chain 10012 chr4 191154276 + 14861638 14861761 L1PA5 6144 + 6021 6144 160526 123 chain 192311 chr4 191154276 + 14942338 14944462 L1PA3long 6157 + 4026 6152 19836 164 1 0 167 0 4 945 1 0 846 chain 27863 chr4 191154276 + 14946444 14946737 AluYa5 310 - 17 310 93484 293 chain 8706 chr4 191154276 + 14952836 14953071 L1PB1 5432 + 5203 5421 167160 17 2 1 14 5 4 27 13 18 12 32 20 11 2 0 4 1 0 14 3 1 26 1 0 19 1 0 13 1 0 17 chain 24818 chr4 191154276 + 14963205 14963997 MLT2A2 560 - 0 560 105784 49 386 41 9 0 5 33 7 114 5 0 2 24 1 0 44 37 38 13 1 0 183 chain 16929 chr4 191154276 + 14978770 14978968 L1PA7 6471 - 10 208 135773 198 chain 121431 chr4 191154276 + 15087175 15088722 THE1A-int 1579 - 5 1578 30555 370 3 4 20 0 1 385 0 16 280 16 6 50 0 2 244 5 20 46 0 1 128 chain 3493 chr4 191154276 + 15090202 15090239 MADE1 96 - 59 96 215471 37 chain 22179 chr4 191154276 + 15109021 15109771 PRIMA4_LTR 623 - 0 623 119446 20 10 9 33 7 8 55 1 0 48 20 25 38 32 92 35 17 125 15 1 0 18 310 12 90 chain 146894 chr4 191154276 + 15114158 15115798 L1PA3long 6157 - 0 1654 25033 637 1 12 198 0 3 804 chain 81280 chr4 191154276 + 15115798 15116687 L1PA3long 6157 + 3625 4515 43020 826 0 1 63 chain 77722 chr4 191154276 + 15121633 15122686 MER11C 1089 + 0 1073 44649 220 0 5 21 0 9 62 6 10 204 54 47 112 7 9 38 0 1 83 0 5 39 0 1 54 1 0 144 0 1 8 chain 116090 chr4 191154276 + 15136862 15138450 THE1B-int 1605 - 5 1605 32421 144 29 2 10 0 1 265 0 4 36 0 2 339 37 38 37 2 0 5 26 29 205 1 2 14 0 2 8 0 25 416 1 3 13 chain 25619 chr4 191154276 + 15138450 15138811 THE1B 368 - 0 368 101630 37 17 25 8 1 0 123 4 3 119 0 1 52 chain 23509 chr4 191154276 + 15143580 15143883 AluY 311 + 4 310 113074 4 0 1 123 0 1 127 10 11 39 chain 290184 chr4 191154276 + 15156331 15160177 L1PB1 5432 - 8 3869 14009 4 1 0 16 1 0 13 1 0 21 1 0 22 2 0 16 8 5 18 20 9 4 1 0 16 1 0 43 1 0 16 2 1 17 0 8 26 2 0 11 16 11 9 1 0 22 3 0 11 7 2 286 8 5 69 0 1 121 3 0 856 9 9 16 3 37 89 0 2 205 10 3 251 0 1 570 0 5 36 3 1 46 1 0 677 10 22 11 0 1 175 0 1 4 0 5 27 0 1 7 chain 539127 chr4 191154276 + 15175630 15181636 L1PA3long 6157 + 0 6157 2965 152 0 1 102 0 1 521 1 129 2356 2 1 1286 11 22 937 1 12 637 chain 9651 chr4 191154276 + 15185779 15185941 L1PA8 5853 + 5692 5853 162343 48 2 1 19 1 0 17 17 18 58 chain 49769 chr4 191154276 + 15205602 15206153 L1PA2 6032 + 5467 6030 59182 406 0 7 132 1 6 12 chain 22236 chr4 191154276 + 15208817 15209131 THE1D-int 1627 + 1298 1619 119185 135 6 10 78 0 1 42 0 1 4 1 0 7 2 1 12 0 3 18 0 1 4 1 0 4 chain 3852 chr4 191154276 + 15216136 15216179 MLT1B 390 - 46 89 209618 43 chain 29051 chr4 191154276 + 15244729 15245036 AluYb8 318 - 11 318 88762 307 chain 3048 chr4 191154276 + 15252864 15252900 THE1D 372 - 1 37 224039 36 chain 120115 chr4 191154276 + 15270347 15271914 THE1B-int 1605 + 0 1605 31023 425 3 28 353 17 17 182 5 10 8 0 1 12 1 0 4 5 6 421 0 5 66 0 1 46 0 1 19 chain 27821 chr4 191154276 + 15278350 15278702 THE1A 353 - 0 353 93626 288 3 4 61 chain 546527 chr4 191154276 + 15280290 15286276 L1PA2 6032 + 13 6014 1881 244 2 1 1055 0 9 1810 1 0 1097 0 4 949 0 4 828 chain 10180 chr4 191154276 + 15288561 15288681 HSMAR1 1287 + 0 120 159716 120 chain 7794 chr4 191154276 + 15319406 15319493 L1PA4 6152 + 6065 6152 172332 87 chain 7874 chr4 191154276 + 15321543 15321636 L1PA2 6032 - 2 95 171841 93 chain 210441 chr4 191154276 + 15357726 15360214 L1PA7 6471 - 1 2518 18471 191 1 2 214 0 1 362 0 2 23 0 1 60 3 1 73 0 1 435 0 11 14 0 1 123 0 1 468 0 1 91 1 12 368 1 0 4 5 6 51 chain 46663 chr4 191154276 + 15369919 15370442 L1PA5 6144 - 3 526 61485 523 chain 18984 chr4 191154276 + 15398514 15398867 THE1B 368 - 2 368 130146 73 0 6 89 0 1 4 101 106 39 0 1 47 chain 5934 chr4 191154276 + 15454078 15454233 MER20 218 - 59 217 185839 16 9 10 42 46 39 24 1 0 8 0 10 9 chain 36566 chr4 191154276 + 15492296 15492738 LTR2 463 + 0 463 74150 162 7 27 79 0 1 194 chain 59337 chr4 191154276 + 15497147 15498176 L1PA15 4387 - 21 1037 53199 10 1 0 25 5 0 15 2 0 45 18 15 39 17 12 20 1 0 45 11 10 25 6 5 52 25 25 29 5 0 62 7 6 18 25 27 54 4 0 7 6 8 320 4 15 54 0 1 7 1 0 6 11 12 47 chain 10526 chr4 191154276 + 15501766 15501896 Tigger3d 321 - 137 267 158147 130 chain 27453 chr4 191154276 + 15518564 15518869 AluYf4 310 - 4 310 94806 99 0 1 206 chain 108751 chr4 191154276 + 15519711 15521123 THE1B-int 1605 - 0 1571 34493 26 0 3 25 1 0 12 2 1 156 0 117 353 0 10 76 6 7 127 11 10 212 8 38 96 2 0 62 7 9 194 0 1 36 chain 22791 chr4 191154276 + 15525770 15526042 AluSg7 307 - 23 296 116629 152 1 2 119 chain 4764 chr4 191154276 + 15531518 15531583 L1PA4 6152 - 0 66 197763 6 3 0 9 0 4 47 chain 24208 chr4 191154276 + 15537801 15538089 L1PA6 6164 + 5875 6160 109164 133 0 1 4 1 0 141 3 0 6 chain 4027 chr4 191154276 + 15548946 15549172 L1MA4 2864 - 60 248 206963 28 11 9 21 139 104 6 1 0 20 chain 41448 chr4 191154276 + 15571088 15571616 MER41C 542 - 0 539 67350 24 8 17 185 1 2 81 0 1 229 chain 34964 chr4 191154276 + 15574271 15574762 MLT2A2 560 - 0 532 76240 6 0 4 33 2 0 27 0 1 11 0 1 62 4 15 51 5 6 161 6 5 39 0 26 84 chain 9831 chr4 191154276 + 15576535 15576658 MER85 139 + 4 137 161442 85 0 10 38 chain 134429 chr4 191154276 + 15616354 15617904 LTR12C 1709 + 0 1709 27126 691 0 159 261 1 0 6 2 0 107 0 4 43 1 0 438 chain 44514 chr4 191154276 + 15622253 15622766 MER9a1 513 + 0 513 63563 513 chain 180311 chr4 191154276 + 15632545 15634640 L1PA6 6164 - 2 2111 20964 9 0 2 4 1 0 143 13 12 682 0 2 134 0 1 305 0 2 423 0 1 77 0 8 304 chain 24898 chr4 191154276 + 15648177 15648471 L1PA4 6152 - 6 301 105355 25 0 1 116 0 1 55 1 0 23 0 1 32 1 0 41 chain 23399 chr4 191154276 + 15669398 15669680 AluSp 311 + 16 297 113650 266 1 0 15 chain 38654 chr4 191154276 + 15695563 15696089 LTR10G 522 - 0 522 71220 76 3 0 93 1 0 41 12 13 106 1 2 4 1 0 74 1 0 113 chain 4907 chr4 191154276 + 15697770 15697843 MER30 238 + 153 238 196192 27 4 16 42 chain 5543 chr4 191154276 + 15698399 15698468 MER63D 473 - 333 403 189633 53 0 1 16 chain 26047 chr4 191154276 + 15701121 15701509 THE1A 353 - 0 353 99839 151 1 0 71 10 2 19 1 0 20 0 1 6 33 7 76 chain 15401 chr4 191154276 + 15701509 15701700 THE1A-int 1579 - 0 196 140199 9 0 1 74 0 4 108 chain 30749 chr4 191154276 + 15719330 15719727 MER83 447 - 48 447 82956 170 3 4 138 0 1 86 chain 30703 chr4 191154276 + 15723069 15723439 L1PA5 6144 + 5773 6144 83030 37 0 1 333 chain 49861 chr4 191154276 + 15734449 15735189 LTR12 884 - 25 883 59114 103 0 8 19 1 104 181 0 1 65 2 0 32 87 5 46 0 91 169 11 10 24 chain 7201 chr4 191154276 + 15734852 15734939 LTR12 884 - 629 741 138194 26 0 25 61 chain 22862 chr4 191154276 + 15745839 15746218 THE1D 372 - 0 372 116277 120 9 8 19 1 0 25 13 16 105 32 23 27 1 0 15 0 2 12 chain 28916 chr4 191154276 + 15770103 15770418 AluYb8 318 - 6 318 89390 186 3 0 126 chain 2669 chr4 191154276 + 15782759 15782820 MLT1H1-int 942 - 806 863 230798 29 14 12 11 2 0 5 chain 16660 chr4 191154276 + 15787970 15788177 LTR12C 1709 - 800 1006 136511 72 1 0 134 chain 7712 chr4 191154276 + 15788177 15788267 LTR12C 1709 - 687 777 153684 90 chain 30647 chr4 191154276 + 15789305 15789746 LTR22A 463 - 0 463 83128 89 0 14 131 32 39 19 7 8 163 chain 74467 chr4 191154276 + 15791826 15792662 SVA_D 2077 + 55 898 46289 115 0 10 28 4 1 689 chain 101124 chr4 191154276 + 15792707 15794063 SVA_E 1901 + 669 1901 36483 35 0 80 28 1 0 5 1 0 106 1 0 4 3 0 83 1 0 130 2 0 16 196 0 65 1 2 678 chain 6174 chr4 191154276 + 15793123 15793198 SVA_E 1901 + 981 1057 157054 71 0 1 4 chain 5779 chr4 191154276 + 15793215 15793319 SVA_E 1901 + 926 1030 63691 104 chain 44994 chr4 191154276 + 15801344 15801909 LTR19B 566 + 0 566 63062 372 0 1 140 0 1 27 2 1 24 chain 208792 chr4 191154276 + 15815065 15817982 L1PA8 5853 - 0 2593 18582 92 2 1 19 2 1 50 3 0 11 1 0 67 2 0 48 1 0 422 0 1 132 0 2 28 9 13 456 335 1 33 4 12 130 1 0 123 0 1 17 0 3 46 6 7 877 chain 26635 chr4 191154276 + 15820630 15820964 L1PA7 6471 + 6132 6468 97529 6 1 0 175 0 1 4 1 2 11 0 1 136 chain 277809 chr4 191154276 + 15821002 15824533 L1PA10 4194 + 559 4161 14757 132 0 3 243 0 4 200 0 49 55 0 1 88 0 1 247 0 1 64 0 4 72 0 1 886 1 2 5 1 0 13 1 2 31 2 0 40 0 3 27 0 2 25 0 9 176 0 5 6 11 0 168 18 9 24 0 1 466 0 1 211 0 9 268 4 3 34 1 0 11 chain 85310 chr4 191154276 + 15831511 15832918 L1MA2 4263 - 150 4258 41412 7 1 0 48 7 0 92 1 0 9 2 1 147 3 0 224 4 1 17 1 0 153 10 11 39 8 6 51 10 0 88 6 2736 50 20 15 72 0 1 4 1 0 9 1 0 21 0 14 48 1 0 83 69 62 82 1 0 17 chain 567144 chr4 191154276 + 15843169 15849195 L1HS 6032 + 0 6032 80 4389 0 6 1637 chain 38850 chr4 191154276 + 15856100 15856638 MLT2A2 560 - 0 560 70948 6 0 4 26 10 12 99 0 11 222 18 17 149 0 6 8 chain 31456 chr4 191154276 + 15858854 15859263 L1PA6 6164 - 3 405 81724 7 2 0 126 20 15 254 chain 26079 chr4 191154276 + 15862840 15863210 THE1C 375 + 0 375 99710 12 0 1 104 18 22 45 1 2 164 1 0 25 chain 13356 chr4 191154276 + 15870202 15870359 MER41C 542 + 385 542 146860 157 chain 29440 chr4 191154276 + 15874381 15874691 AluYg6 310 + 0 310 86896 310 chain 88460 chr4 191154276 + 15880169 15881177 LTR5B 1012 + 0 1012 40201 101 0 2 628 0 2 279 chain 9106 chr4 191154276 + 15898552 15898661 MER57A1 433 - 5 113 165045 8 1 0 100 chain 11009 chr4 191154276 + 15916334 15916528 MER74A 558 - 0 150 156177 23 2 0 101 43 1 25 chain 30291 chr4 191154276 + 15917076 15917504 MER51E 476 - 2 476 83957 47 5 1 11 2 0 5 11 29 116 2 1 73 0 35 156 chain 44016 chr4 191154276 + 15917844 15918357 MER9a2 513 - 0 513 64187 490 1 0 9 0 1 13 chain 19441 chr4 191154276 + 15920862 15921146 MER83B 357 - 20 355 128847 111 1 0 45 13 67 26 3 1 85 chain 27063 chr4 191154276 + 15954150 15954477 THE1A 353 - 0 326 96068 243 3 2 81 chain 123544 chr4 191154276 + 15954516 15956544 THE1A-int 1579 - 12 1579 29863 155 1 7 307 9 6 275 489 13 474 0 11 117 1 2 200 chain 2495 chr4 191154276 + 16010368 16010410 U6 107 - 70 107 233173 26 6 1 10 chain 5682 chr4 191154276 + 16016242 16016307 MER85 139 - 74 139 188274 65 chain 4278 chr4 191154276 + 16063299 16063495 MLT1C 463 - 24 271 203491 16 3 0 5 5 22 26 33 32 14 25 26 19 29 66 21 chain 79771 chr4 191154276 + 16078280 16079255 LTR5_Hs 974 + 0 974 43699 101 0 1 186 13 6 173 0 1 352 8 14 37 2 0 103 chain 18836 chr4 191154276 + 16082693 16082913 L1PA5 6144 - 5 225 130558 220 chain 16424 chr4 191154276 + 16101711 16101956 L1MA3 4352 + 3166 3428 137137 186 21 40 5 3 0 5 0 1 25 chain 15028 chr4 191154276 + 16117164 16117533 MSTB 430 + 0 410 141239 97 51 69 15 77 87 14 0 1 24 11 16 40 0 7 40 chain 79115 chr4 191154276 + 16146276 16147292 MER11A 1151 + 0 1151 43993 55 0 99 76 1 0 64 4 0 146 0 1 97 5 6 291 17 48 33 0 9 42 1 0 12 1 2 155 1 0 15 chain 32645 chr4 191154276 + 16147512 16147983 MER4A1 472 + 1 472 79769 215 16 36 12 32 11 168 0 1 28 chain 26235 chr4 191154276 + 16242438 16242796 THE1B 368 + 0 357 99075 15 3 1 24 0 5 124 2 0 27 4 3 95 1 0 63 chain 101355 chr4 191154276 + 16285146 16286566 THE1B-int 1605 + 13 1580 36429 220 48 5 20 22 4 164 5 30 70 3 6 58 0 1 4 1 0 251 0 9 75 1 171 177 5 6 296 chain 86100 chr4 191154276 + 16299624 16300581 L1PA3long 6157 - 0 958 41119 147 0 1 191 1 0 434 3 0 76 0 4 105 chain 19437 chr4 191154276 + 16363976 16364213 L1PA6 6164 - 7 244 128852 237 chain 19374 chr4 191154276 + 16368054 16368435 L1PB1 5432 - 5 346 129014 5 3 0 21 1 0 10 1 0 10 0 1 10 1 0 24 2 0 14 1 0 5 2 0 30 14 1 16 1 0 44 1 0 11 6 5 53 2 0 5 8 4 11 1 0 13 1 0 16 4 1 14 3 0 17 chain 475995 chr4 191154276 + 16368923 16374464 L1PA6 6164 - 4 5594 7854 144 0 1 34 1 0 4 1 2 659 0 4 621 1 0 362 1 13 792 0 1 250 0 5 33 0 4 476 0 2 427 0 2 536 0 1 309 4 5 669 0 17 217 chain 5711 chr4 191154276 + 16379641 16379712 MER50 708 + 0 75 188004 51 1 5 19 chain 7464 chr4 191154276 + 16381639 16381755 MER50 708 - 31 149 174377 64 22 24 30 chain 5685 chr4 191154276 + 16387683 16387753 MLT1H 522 + 99 169 188248 70 chain 160938 chr4 191154276 + 16394156 16395980 SVA_D 2077 - 2 2077 23204 314 1 0 351 19 17 4 0 1 152 1 9 44 4 81 9 1 0 34 0 51 34 0 123 826 5 0 25 chain 544362 chr4 191154276 + 16404005 16410163 L1PA4 6152 - 1 6149 2161 33 0 1 120 7 0 508 1 0 4055 1 0 858 1 0 250 12 11 312 chain 23511 chr4 191154276 + 16414109 16414399 AluSc 308 + 5 294 113065 121 1 0 168 chain 174392 chr4 191154276 + 16422844 16424781 L1PA3long 6157 + 4223 6157 21553 80 0 1 36 1 0 541 0 1 1016 1 0 254 3 0 5 chain 38338 chr4 191154276 + 16438848 16439366 MLT2A2 560 - 0 560 71669 147 3 14 53 6 38 128 1 0 180 chain 24861 chr4 191154276 + 16448100 16448388 L1PA5 6144 - 12 300 105564 288 chain 4038 chr4 191154276 + 16453512 16453559 MLT1B 390 - 43 90 206805 47 chain 19808 chr4 191154276 + 16455748 16455965 L1PA4 6152 - 190 407 127788 217 chain 8442 chr4 191154276 + 16455965 16456058 L1PA4 6152 + 6053 6146 168608 93 chain 21204 chr4 191154276 + 16470487 16470947 L1PA11 4918 + 4209 4629 123199 122 13 7 50 9 8 78 3 1 12 2 1 14 27 18 10 15 11 13 1 0 13 60 44 18 chain 24795 chr4 191154276 + 16492288 16492615 THE1C 375 - 0 375 105919 25 1 0 155 17 66 129 chain 11983 chr4 191154276 + 16523960 16524145 MER2 342 + 31 215 152280 35 26 25 124 chain 24253 chr4 191154276 + 16529002 16529327 L1PB1 5432 + 4767 5103 108924 37 1 0 33 1 0 120 0 10 114 0 2 14 0 1 5 chain 68953 chr4 191154276 + 16544440 16545221 L1PA5 6144 - 41 824 48834 172 0 1 119 0 1 490 chain 28844 chr4 191154276 + 16545225 16545555 L1PA5 6144 + 4971 5301 89689 163 0 1 159 1 0 7 chain 25669 chr4 191154276 + 16555673 16555972 AluSp 311 - 12 311 101406 299 chain 6435 chr4 191154276 + 16556217 16556438 L1MC1 2226 + 1889 2098 181737 25 1 0 7 6 7 4 1 0 21 41 43 48 52 39 15 chain 551708 chr4 191154276 + 16558715 16564847 L1PA3long 6157 + 6 6155 1222 118 1 15 177 0 2 98 3 0 94 2 0 397 0 1 177 0 6 811 4 0 417 1 0 863 0 1 54 1 0 1404 1 0 111 0 1 557 0 4 841 chain 20661 chr4 191154276 + 16569148 16569384 AluY 311 + 37 274 125100 89 0 1 147 chain 479252 chr4 191154276 + 16610786 16617338 L1PA8A 6298 + 132 6291 7753 14 14 12 12 5 20 12 2 0 6 1 0 12 2 1 8 1 0 9 2 1 4 1 0 13 4 0 10 2 0 42 16 0 10 7 8 79 0 6 7 20 17 156 6 9 79 6 0 97 21 19 93 5 10 236 0 2 438 5 7 47 4 1 4 0 1 733 0 2 141 1 0 32 0 2 856 1 0 38 13 17 114 0 9 120 0 1 168 4 5 151 9 0 133 1 0 76 0 1 177 58 2 382 0 1 30 1 0 71 0 1 261 1 0 336 22 0 10 2 0 50 18 21 93 314 0 168 7 6 352 1 2 95 chain 3448 chr4 191154276 + 16622406 16622573 LTR79 453 + 243 416 216234 7 0 3 20 111 114 29 chain 456188 chr4 191154276 + 16630259 16636922 L1PA7 6471 + 5 6468 8536 196 1 0 91 0 1 22 61 256 50 7 7 48 50 60 57 1 76 176 10 31 192 0 197 633 5 6 244 0 1 23 41 39 138 0 1 82 2 3 254 6 10 603 2 0 35 0 1 471 1 4 197 0 2 152 1 0 4 0 1 145 0 2 123 684 0 35 0 2 803 29 14 5 0 3 41 18 0 78 2 1 217 3 6 624 chain 58882 chr4 191154276 + 16634388 16635067 L1PA6 6164 + 5484 6162 53470 4 1 0 674 chain 29145 chr4 191154276 + 16646877 16647187 AluYb8 318 + 0 309 88343 126 1 0 183 chain 5136 chr4 191154276 + 16686540 16686596 MER58A 224 - 124 180 193730 56 chain 10291 chr4 191154276 + 16698774 16698889 AluY 311 + 9 124 159172 115 chain 23841 chr4 191154276 + 16764006 16764349 THE1C 375 - 0 375 111242 136 24 53 8 0 2 90 5 6 80 chain 24641 chr4 191154276 + 16919221 16919521 AluYc3 301 - 8 301 106777 50 8 0 128 1 2 113 chain 26088 chr4 191154276 + 16920358 16920751 LTR7 482 + 0 468 99671 86 1 51 87 48 68 10 0 4 58 0 1 103 chain 3284 chr4 191154276 + 16926532 16926567 MER34B 572 + 478 513 219293 35 chain 3726 chr4 191154276 + 16928592 16928663 MER41B 635 - 83 154 211543 25 1 0 4 10 11 31 chain 2672 chr4 191154276 + 16930558 16930602 MER21C 908 + 51 94 230755 15 4 3 25 chain 13155 chr4 191154276 + 16936521 16936701 MER30 238 + 31 231 147628 76 4 24 100 chain 564513 chr4 191154276 + 16944399 16950736 L1HS 6032 + 2 6031 224 72 0 1 1769 309 0 4187 chain 8892 chr4 191154276 + 16964860 16965034 MSTA 426 - 224 426 166172 42 31 60 33 12 11 56 chain 43794 chr4 191154276 + 16976456 16976942 LTR7 482 + 0 482 64462 31 0 1 127 5 0 323 chain 5410 chr4 191154276 + 16980292 16980361 L1MD1 2063 + 86 155 190888 69 chain 22935 chr4 191154276 + 16981486 16981788 AluY 311 + 13 303 115928 47 16 0 72 0 1 135 2 5 30 chain 35283 chr4 191154276 + 16998858 16999337 MER41A 554 + 0 509 75818 51 22 44 23 0 2 136 0 5 218 1 2 28 chain 39812 chr4 191154276 + 16999369 16999821 LTR7 482 + 0 482 69610 38 0 2 16 2 0 197 1 31 198 chain 280230 chr4 191154276 + 16999823 17003328 HERVH-int 3825 + 0 3825 14631 177 43 54 238 1 0 4 0 1 19 3 111 14 1 0 13 33 7 19 24 0 34 0 20 68 0 1 4 2 0 647 9 0 9 0 1 29 1 0 215 6 35 366 10 15 337 1 0 10 1 0 672 8 218 487 chain 40171 chr4 191154276 + 17005097 17005548 LTR7 482 + 0 482 69075 230 0 31 221 chain 3807 chr4 191154276 + 17021896 17021941 MLT2A1 477 + 433 477 210283 25 1 0 19 chain 29371 chr4 191154276 + 17037530 17037841 AluYb8 318 - 7 318 87199 311 chain 75693 chr4 191154276 + 17064267 17065436 L1PB1 5432 + 4307 5422 45656 168 1 0 152 3 0 47 0 3 317 21 3 7 0 1 92 9 8 9 5 0 24 2 1 7 1 0 12 5 1 8 4 2 48 5 4 16 1 0 44 1 0 13 23 12 20 10 7 13 2 0 24 1 0 21 1 0 12 6 5 14 chain 17466 chr4 191154276 + 17090188 17090548 THE1B 368 + 0 368 134340 106 17 18 53 69 75 25 7 9 20 14 13 49 chain 3884 chr4 191154276 + 17111391 17111432 L1PA7 6471 - 14 55 209110 41 chain 2829 chr4 191154276 + 17112197 17112228 L1ME1 1623 - 548 579 228228 31 chain 75790 chr4 191154276 + 17141252 17142267 MER11A 1151 + 0 1146 45600 55 0 99 69 6 5 66 4 0 146 5 6 91 0 1 146 0 1 150 17 48 19 0 1 17 0 1 59 7 8 158 chain 21677 chr4 191154276 + 17150511 17150808 THE1B 368 + 0 306 121480 44 0 15 48 0 1 60 1 0 15 5 0 104 2 1 18 chain 11400 chr4 191154276 + 17185613 17185745 L1PA4 6152 + 6020 6152 154694 132 chain 27448 chr4 191154276 + 17202761 17203066 AluYk11 308 - 7 308 94826 36 2 1 138 3 0 126 chain 20503 chr4 191154276 + 17209973 17210275 THE1B 368 + 0 306 125621 58 0 1 4 8 7 99 1 0 29 0 3 7 3 7 15 1 0 12 2 1 63 chain 110907 chr4 191154276 + 17216070 17217532 THE1B-int 1605 - 0 1481 33963 72 0 1 203 17 1 57 0 1 428 20 24 309 1 0 53 1 26 30 0 5 271 chain 24018 chr4 191154276 + 17217912 17218272 THE1B 368 - 0 368 110226 187 10 9 51 25 31 48 0 5 18 2 0 19 chain 178724 chr4 191154276 + 17228085 17230237 L1PA7 6471 - 10 2158 21106 119 6 1 48 1 3 9 4 5 145 1 0 428 1 0 81 2 0 16 0 4 335 1 0 596 2 0 267 0 1 90 chain 3079 chr4 191154276 + 17238860 17238895 MER53 195 + 0 35 223352 35 chain 11192 chr4 191154276 + 17246686 17246920 L1PB3 3668 + 3408 3613 155452 51 1 0 19 20 4 19 2 0 27 3 1 37 7 3 12 3 2 12 7 4 14 chain 35053 chr4 191154276 + 17260753 17261153 L1PA4 6152 - 1 404 76111 137 0 4 19 1 0 243 chain 10542 chr4 191154276 + 17261153 17261264 L1PA4 6152 + 5544 5655 158072 111 chain 12487 chr4 191154276 + 17296828 17297014 L1PB2 3958 - 120 302 150311 62 2 1 23 2 0 70 6 5 21 chain 27021 chr4 191154276 + 17297412 17297755 THE1C 375 - 28 375 96213 160 1 0 6 0 1 42 0 4 134 chain 14332 chr4 191154276 + 17312393 17312678 L1PB1 5432 + 5170 5430 143453 50 2 1 16 8 7 37 1 0 15 3 0 7 17 8 15 10 7 13 2 0 22 1 0 24 1 0 12 1 0 18 1 0 4 1 0 4 chain 3254 chr4 191154276 + 17336647 17336688 MLT1C 463 + 63 105 219915 27 0 1 14 chain 26721 chr4 191154276 + 17351334 17351710 MSTA-int 1630 - 1 403 97259 55 15 17 32 2 1 9 1 0 23 0 1 10 0 24 93 2 3 134 chain 4782 chr4 191154276 + 17367129 17367285 MER63A 208 - 53 208 197555 54 84 83 18 chain 23277 chr4 191154276 + 17369363 17369724 THE1B 368 + 0 368 114312 64 1 4 73 0 1 27 1 0 21 8 10 9 1 5 18 1 0 7 5 4 61 1 0 6 1 2 56 chain 64557 chr4 191154276 + 17384191 17384915 L1PA4 6152 - 9 734 50775 104 0 1 620 chain 42777 chr4 191154276 + 17392402 17393152 L1PA11 4918 - 289 1004 65684 18 137 100 23 1 0 12 3 1 67 3 1 13 2 1 14 0 3 42 15 9 353 0 11 47 chain 82261 chr4 191154276 + 17404442 17405448 L1PA7 6471 + 5473 6470 42651 207 5 9 212 19 10 208 6 0 80 0 4 258 2 0 9 chain 5443 chr4 191154276 + 17415501 17415773 LTR12C 1709 - 800 1031 190584 50 55 133 12 42 1 24 78 0 11 chain 23065 chr4 191154276 + 17430604 17430903 AluY 311 + 0 292 115326 20 6 1 85 4 5 18 3 0 163 chain 2134 chr4 191154276 + 17437316 17437428 LTR12C 1709 - 195 264 237318 20 74 31 18 chain 8153 chr4 191154276 + 17437995 17438093 LTR12C 1709 - 839 936 170212 33 1 0 64 chain 19179 chr4 191154276 + 17444738 17445116 THE1D 372 - 0 372 129586 61 0 1 85 1 0 17 40 42 35 62 63 15 9 0 53 chain 5392 chr4 191154276 + 17447473 17447630 LTR41B 718 - 544 709 191072 31 12 11 22 55 64 37 chain 24202 chr4 191154276 + 17453992 17454319 THE1B 368 + 0 328 109200 169 1 0 30 10 15 16 1 0 10 1 0 68 1 0 20 chain 6156 chr4 191154276 + 17454816 17454889 L1MA5A 2387 - 912 989 183931 16 0 4 57 chain 18816 chr4 191154276 + 17462939 17463167 LTR8 732 - 459 693 130630 110 0 6 118 chain 26805 chr4 191154276 + 17466093 17466447 THE1B 368 + 0 367 96961 44 0 15 116 1 0 23 17 12 147 0 4 6 chain 5483 chr4 191154276 + 17468845 17468912 MLT1D 503 + 436 503 190191 67 chain 26934 chr4 191154276 + 17471347 17471648 L1PA4 6152 - 0 306 96502 6 0 5 295 chain 27300 chr4 191154276 + 17480188 17480546 THE1A 353 - 0 351 95275 155 1 0 123 6 0 73 chain 20832 chr4 191154276 + 17485595 17485877 AluSc 308 + 9 289 124504 17 1 0 114 13 13 104 2 1 31 chain 3370 chr4 191154276 + 17529350 17529388 MADE1 96 - 58 96 217676 38 chain 7107 chr4 191154276 + 17537239 17537324 MER101 471 - 2 87 176706 85 chain 26449 chr4 191154276 + 17543402 17543679 AluYg6 310 - 22 299 98243 277 chain 9325 chr4 191154276 + 17549401 17549547 MLT1B 390 + 230 390 163919 69 14 15 42 0 13 21 chain 3309 chr4 191154276 + 17562194 17562267 MER70C 520 + 0 71 218796 15 17 16 5 1 0 35 chain 220991 chr4 191154276 + 17645868 17648365 L1PA5 6144 + 3641 6142 17820 386 2 0 126 1 5 287 0 3 183 0 5 741 1 0 437 1 0 321 4 0 7 chain 48818 chr4 191154276 + 17673938 17674584 L1PB 1623 - 521 1153 59861 160 19 0 9 3 10 295 1 0 143 1 0 15 chain 60304 chr4 191154276 + 17674584 17675525 L1PB1 5432 + 4502 5420 52679 124 3 0 168 29 42 94 1 0 173 1 2 9 3 0 21 1 0 6 0 1 4 1 0 12 4 0 11 2 0 7 0 1 29 1 0 14 2 1 10 6 5 38 7 6 11 19 6 30 8 5 14 2 0 18 0 1 5 1 0 21 1 0 13 1 0 16 chain 190007 chr4 191154276 + 17679010 17681756 L1PB1 5432 + 2671 5392 20047 147 0 2 5 4 8 16 0 1 45 6 7 293 0 2 7 1 0 521 9 0 8 1 5 224 6 5 15 19 20 141 21 25 29 5 1 291 0 1 117 1 5 10 1 3 153 0 1 16 22 23 84 40 26 10 2 11 145 11 14 6 7 0 24 1 0 4 3 2 12 10 6 6 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 2 0 7 10 1 15 28 23 24 1 0 22 chain 7419 chr4 191154276 + 17694447 17694565 ORSL 269 + 53 204 174657 47 0 1 4 7 40 44 1 0 15 chain 542030 chr4 191154276 + 17730391 17736960 L1PA4 6152 + 7 6147 2496 569 1 0 257 17 0 1018 419 8 206 1 0 528 8 1 588 1 0 262 0 1 710 3 7 186 0 4 209 0 1 170 2 0 568 0 1 846 chain 33769 chr4 191154276 + 17732253 17732672 L1P1 4361 + 1023 1442 77388 419 chain 6564 chr4 191154276 + 17767879 17767997 LTR12C 1709 - 832 872 139487 21 78 0 19 chain 22654 chr4 191154276 + 17767999 17768282 LTR12C 1709 - 506 836 117306 44 0 47 239 chain 25587 chr4 191154276 + 17775192 17775499 AluSp 311 - 7 311 101794 19 3 0 285 chain 6160 chr4 191154276 + 17778636 17778763 L1MB8 1703 + 1251 1393 183886 21 30 42 40 1 4 35 chain 3861 chr4 191154276 + 17784656 17784742 MER20B 722 + 327 417 209452 43 29 33 14 chain 90227 chr4 191154276 + 17793927 17794931 L1PA4 6152 + 5129 6132 39567 255 1 0 748 chain 25127 chr4 191154276 + 17801490 17801788 AluSp 311 + 0 303 104142 97 0 2 90 0 3 111 chain 23314 chr4 191154276 + 17803470 17803746 AluY 311 + 26 304 114130 108 0 1 49 0 1 119 chain 14940 chr4 191154276 + 17836213 17836404 L1PA7 6471 - 3 194 141505 6 3 0 97 0 3 85 chain 95018 chr4 191154276 + 17850169 17851292 L1P1 4361 + 1 1125 38092 575 1 0 235 17 0 8 0 17 201 0 2 86 chain 147813 chr4 191154276 + 17851293 17852911 L1PA3long 6157 + 4535 6157 24901 775 0 4 843 chain 121515 chr4 191154276 + 17862191 17863757 THE1B-int 1605 - 7 1605 30536 74 0 5 223 0 3 122 2 0 349 2 1 20 13 9 99 15 18 218 0 25 157 0 1 258 0 2 14 chain 70519 chr4 191154276 + 17864105 17865478 L1PA15 4387 + 3279 4356 48151 410 1 24 37 0 2 52 2 0 6 0 3 36 308 0 38 6 12 33 1 0 72 1 0 94 7 6 26 1 0 54 2 1 8 2 1 23 5 0 42 20 18 37 3 1 11 8 3 27 chain 138586 chr4 191154276 + 17925289 17927210 HERVL-int 5654 + 1166 5383 26382 196 88 2378 189 5 4 487 5 6 473 2 5 113 4 0 196 22 22 48 0 3 52 0 4 41 chain 24912 chr4 191154276 + 17939622 17939919 AluSp 311 - 7 301 105266 42 1 0 130 2 0 122 chain 7908 chr4 191154276 + 17957672 17957977 L1MA4A 3247 + 2858 3128 171596 25 186 152 72 1 0 21 chain 3656 chr4 191154276 + 17970215 17970410 MER58B 340 - 0 204 212658 21 83 84 14 22 31 17 12 11 26 chain 20622 chr4 191154276 + 17980541 17980786 L1PA4 6152 - 1 266 125215 4 0 1 89 0 18 148 0 1 4 chain 22461 chr4 191154276 + 17989574 17989905 THE1B 368 + 0 348 118196 15 2 0 25 0 5 18 0 5 71 10 19 10 1 0 21 3 5 109 1 0 45 chain 6549 chr4 191154276 + 18000653 18000793 Tigger3b 1229 - 943 1101 180859 27 7 16 46 34 43 26 chain 22693 chr4 191154276 + 18006250 18006550 THE1B-int 1605 - 0 310 117111 5 0 1 67 3 0 56 0 5 49 1 9 16 1 0 102 chain 19214 chr4 191154276 + 18008108 18008468 THE1B 368 - 0 368 129491 73 87 97 26 1 0 62 11 10 100 chain 19988 chr4 191154276 + 18031896 18032218 THE1D 372 + 3 318 127178 18 1 0 27 4 15 13 24 5 42 2 1 61 5 8 125 chain 20049 chr4 191154276 + 18036957 18037320 THE1B 368 - 0 368 126982 62 2 0 65 58 64 38 3 0 5 0 3 13 16 17 101 chain 20747 chr4 191154276 + 18038125 18038382 AluSx 319 + 11 267 124798 28 2 1 227 chain 71775 chr4 191154276 + 18087610 18088535 L1PA10 4194 + 3226 4146 47576 220 13 5 341 6 13 233 1 0 18 1 3 17 2 0 39 5 2 29 chain 540687 chr4 191154276 + 18091867 18098419 L1PA5 6144 + 3 6144 2710 309 0 1 1705 0 1 326 1 0 420 5 0 3 410 0 407 1 0 154 0 1 2040 0 1 441 0 1 137 0 1 30 16 16 147 chain 29534 chr4 191154276 + 18100267 18100646 THE1C 375 - 0 375 86502 25 1 0 230 14 11 109 chain 39621 chr4 191154276 + 18108735 18109251 MLT2A2 560 - 28 560 69863 41 1 2 73 4 16 311 0 3 86 chain 116365 chr4 191154276 + 18109251 18110723 HERVL-int 5654 - 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256 7 0 585 0 4 106 1 0 206 1 6 99 0 2 494 8 25 65 21 0 15 5 94 35 107 32 117 19 0 85 34 7 357 chain 30084 chr4 191154276 + 18247655 18248072 LTR12F 595 - 0 595 84546 32 5 4 74 3 13 80 0 1 26 0 1 93 1 25 17 2 145 84 chain 19676 chr4 191154276 + 18248409 18248773 THE1B 368 - 0 368 128181 58 1 0 67 71 76 50 9 10 59 3 4 31 2 0 13 chain 402598 chr4 191154276 + 18256169 18261568 L1PB1 5432 - 7 5376 10009 5 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 13 5 7 3 0 16 2 1 42 1 0 16 2 1 50 3 1 11 16 11 10 1 0 22 33 0 10 1 2 7 0 2 471 7 9 329 0 1 546 26 16 205 0 5 94 0 7 352 0 8 142 0 1 72 0 2 179 1 2 60 0 6 5 3 0 73 1 12 101 0 4 139 0 1 80 0 1 246 8 0 512 1 4 8 15 0 6 1 0 417 1 0 275 3 1 71 72 72 88 0 18 397 chain 307255 chr4 191154276 + 18268164 18271565 L1PA3long 6157 + 2744 6152 13118 253 0 2 448 0 3 500 7 6 937 0 1 94 0 1 800 0 1 362 chain 6633 chr4 191154276 + 18271703 18271863 THE1D 372 - 212 372 180220 34 69 69 57 chain 35671 chr4 191154276 + 18280080 18280562 LTR3B_ 500 - 21 500 75301 179 0 1 112 8 5 96 9 8 78 chain 20616 chr4 191154276 + 18307255 18307727 THE1C 375 + 0 375 125240 71 155 84 10 23 0 19 7 6 69 1 0 90 1 0 26 chain 14508 chr4 191154276 + 18313009 18313309 THE1B 368 - 62 367 142867 61 66 71 5 1 0 34 31 32 102 chain 56771 chr4 191154276 + 18313318 18314048 THE1B-int 1605 - 9 747 54673 38 1 0 148 7 9 83 4 11 449 chain 466730 chr4 191154276 + 18338969 18345130 L1PA8A 6298 - 32 6264 8162 120 5 7 52 0 1 223 0 7 6 1 0 290 3 4 57 1 4 165 22 28 29 8 13 102 1 0 327 7 6 140 0 4 397 0 2 161 1 0 5 0 1 9 0 1 4 1 0 229 0 1 49 0 1 224 14 12 180 1 0 50 3 2 161 13 13 210 0 4 182 0 1 218 8 1 62 0 5 106 0 2 403 0 2 299 6 5 345 0 50 595 2 1 5 0 1 197 0 1 49 4 2 11 1 0 15 2 0 35 1 0 44 8 0 19 2 1 40 70 68 13 2 0 6 14 12 11 2 1 9 9 34 16 3 0 15 17 10 6 3 0 11 2 1 15 1 0 6 chain 20790 chr4 191154276 + 18364978 18365285 THE1B 368 + 0 328 124647 169 1 0 29 35 53 55 0 4 18 chain 48610 chr4 191154276 + 18378159 18378746 L1PA7 6471 - 16 606 60026 41 2 1 91 1 2 11 0 1 171 0 1 45 1 2 224 chain 120647 chr4 191154276 + 18419093 18420525 LTR12C 1709 - 0 1709 30816 84 1 0 67 1 0 330 0 4 102 7 5 5 1 0 44 0 1 53 0 278 211 2 1 524 chain 43216 chr4 191154276 + 18427630 18428196 L1PA7 6471 + 5867 6467 65151 69 0 35 161 0 1 148 1 0 63 8 4 45 10 13 61 chain 61488 chr4 191154276 + 18473524 18474229 L1PA4 6152 - 17 741 52121 7 0 1 478 5 23 215 chain 64851 chr4 191154276 + 18484822 18485802 L1PA14 3548 - 140 1106 50632 10 1 0 5 1 0 14 5 3 33 4 0 12 1 0 39 5 6 65 1 0 84 1 0 6 2 0 13 14 10 103 17 14 40 16 13 121 4 8 55 0 5 61 2 1 87 0 1 57 6 5 95 chain 61541 chr4 191154276 + 18487246 18487985 L1PA4 6152 + 5409 6151 52096 240 2 1 247 0 1 54 1 9 36 21 16 138 chain 424568 chr4 191154276 + 18493380 18498177 L1PA4 6152 + 1334 6136 9429 19 8 9 1000 0 3 812 1 0 37 2 1 774 1 0 359 0 4 1784 chain 103810 chr4 191154276 + 18498229 18499630 L1P3 4156 + 2701 4135 35768 6 0 3 171 9 7 155 0 19 45 1 8 42 0 8 100 7 8 68 0 2 5 2 0 16 0 2 160 0 2 219 0 1 249 11 10 68 4 0 32 2 0 7 2 1 20 chain 153008 chr4 191154276 + 18500001 18501973 L1PA8 5853 + 3898 5853 24228 160 8 0 282 1 0 263 0 1 356 6 3 39 1 0 7 1 0 60 12 15 437 1 0 43 1 0 39 14 12 63 2 1 59 4 3 19 2 1 92 chain 34181 chr4 191154276 + 18516043 18516425 L1PA3long 6157 - 0 383 77377 338 0 1 44 chain 13039 chr4 191154276 + 18541987 18542257 MSTA 426 + 21 337 148083 8 0 1 67 34 61 69 43 41 28 1 21 20 chain 143245 chr4 191154276 + 18549813 18551390 L1PA3long 6157 - 1275 2854 25609 1462 0 2 115 chain 113918 chr4 191154276 + 18551392 18552658 L1PA3long 6157 + 4883 6149 33114 1266 chain 436988 chr4 191154276 + 18561468 18567126 L1PA8 5853 + 109 5846 9127 186 10 14 209 19 10 667 0 1 184 24 78 315 7 0 475 0 1 17 7 1 33 0 2 395 1 0 185 1 0 24 15 10 54 0 2 292 26 18 360 0 1 239 0 8 164 0 12 32 1 3 6 0 5 378 31 0 198 1 0 25 8 9 279 1 0 8 2 0 382 0 47 124 1 0 47 3 1 69 1 0 8 27 26 23 0 17 7 1 0 86 chain 37191 chr4 191154276 + 18582378 18582892 L1PA8 5853 - 1 537 73246 96 0 17 44 0 1 5 2 1 9 10 9 57 7 5 44 1 0 211 0 9 28 chain 57949 chr4 191154276 + 18590810 18591460 L1PA4 6152 - 1 651 54003 650 chain 13778 chr4 191154276 + 18591460 18591611 L1PA4 6152 + 5335 5486 145337 151 chain 540525 chr4 191154276 + 18598752 18604896 L1PA4 6152 - 0 6151 2729 437 0 2 1361 0 4 167 0 1 1015 1 0 706 0 1 1024 2 1 413 5 10 474 4 0 535 chain 7545 chr4 191154276 + 18611273 18611444 Tigger5 388 + 177 352 173904 56 65 69 50 chain 7053 chr4 191154276 + 18631741 18631824 LTR12C 1709 - 976 1059 177083 83 chain 29186 chr4 191154276 + 18669042 18669438 MER57B1 401 - 2 401 88118 97 25 28 274 chain 38581 chr4 191154276 + 18689850 18690310 LTR2 463 - 0 463 71321 333 0 3 127 chain 99466 chr4 191154276 + 18702701 18703991 L1PA7 6471 - 5 1315 36911 98 4 70 11 10 0 87 0 4 190 49 7 27 0 1 342 7 10 137 2 0 326 chain 25968 chr4 191154276 + 18726532 18726905 LTR12_ 688 + 0 688 100145 20 5 4 46 0 41 34 13 177 30 0 103 96 0 8 129 chain 53322 chr4 191154276 + 18731881 18732568 LTR12_ 688 - 0 688 56818 114 0 1 414 1 26 36 25 0 97 chain 5258 chr4 191154276 + 18736803 18736870 MLT1B 390 + 281 348 192431 67 chain 12133 chr4 191154276 + 18760840 18761069 L1PB1 5432 + 5116 5322 151682 21 1 0 10 16 11 11 2 0 51 2 1 16 1 0 44 1 0 20 3 0 10 9 0 11 chain 8096 chr4 191154276 + 18761225 18761365 L1P5 443 + 190 299 170509 66 31 0 43 chain 6645 chr4 191154276 + 18776845 18776926 L1PA7 6471 + 6389 6470 180130 81 chain 4517 chr4 191154276 + 18780857 18780908 MER2 342 - 127 178 200588 51 chain 89071 chr4 191154276 + 18784438 18785608 HERVL-int 5654 + 4488 5653 39979 135 0 4 29 0 1 22 2 0 5 0 2 448 0 1 85 29 9 41 3 6 17 0 1 70 0 3 5 0 1 66 0 1 213 chain 24274 chr4 191154276 + 18796381 18796731 THE1A 353 - 23 353 108819 220 1 0 34 30 11 65 chain 63863 chr4 191154276 + 18806565 18807503 L1PB2 3958 + 2897 3834 51072 27 1 0 31 10 12 92 1 0 124 0 15 102 1 0 7 2 0 51 0 3 16 5 0 62 2 0 12 3 0 102 17 15 11 0 1 37 1 0 64 9 8 64 2 0 21 2 1 59 chain 12891 chr4 191154276 + 18811785 18811977 MSTC 436 - 234 408 148662 91 17 0 79 1 0 4 chain 24987 chr4 191154276 + 18827481 18827816 L1PA7 6471 + 6136 6468 104875 184 16 17 23 4 0 108 chain 2417 chr4 191154276 + 18828644 18828938 L1MB2 1706 + 1340 1616 234066 27 234 218 13 1 0 13 1 0 5 chain 58437 chr4 191154276 + 18871755 18872517 MER4E1 777 + 0 769 53723 498 7 8 24 13 19 220 chain 43081 chr4 191154276 + 18873423 18873965 MER41A 554 - 0 541 65317 157 3 1 61 0 1 321 chain 43561 chr4 191154276 + 18878199 18878756 MER41A 554 - 0 554 64731 17 2 0 215 1 0 7 0 1 145 5 4 165 chain 8804 chr4 191154276 + 18938163 18938280 L1PA8 5853 - 0 112 166627 93 7 2 17 chain 5065 chr4 191154276 + 18941919 18942007 MADE1 96 + 0 96 194484 43 21 29 24 chain 85870 chr4 191154276 + 18967246 18968180 L1PA3long 6157 + 5218 6152 41206 934 chain 9039 chr4 191154276 + 18979185 18979318 AluSg 306 + 2 137 165382 37 17 19 79 chain 10009 chr4 191154276 + 18983488 18983614 MER2 342 - 80 206 160539 126 chain 7149 chr4 191154276 + 19000014 19000211 THE1B 368 - 159 366 176411 8 0 3 17 13 12 34 69 71 11 0 6 45 chain 65219 chr4 191154276 + 19009710 19010419 L1PA3long 6157 + 5443 6152 50463 709 chain 20436 chr4 191154276 + 19016747 19016984 L1PA5 6144 - 12 249 125791 237 chain 25616 chr4 191154276 + 19018386 19018693 HERVH-int 3825 + 0 308 101644 35 0 1 272 chain 32560 chr4 191154276 + 19029565 19030025 LTR7B 505 - 2 505 79930 46 17 16 54 0 1 24 1 0 43 0 1 38 0 2 26 3 27 28 6 13 69 0 10 105 chain 6342 chr4 191154276 + 19041490 19041697 MLT2B4 540 - 341 540 182453 32 107 100 48 2 1 18 chain 10418 chr4 191154276 + 19055752 19055869 L1PA4 6152 + 6034 6151 158604 117 chain 3356 chr4 191154276 + 19059104 19059139 tRNA-Pro-CCY 72 + 0 35 217957 35 chain 520025 chr4 191154276 + 19061476 19068375 L1PA7 6471 + 0 6461 5161 331 8 7 62 5 9 108 0 9 465 0 1 109 5 4 675 0 1 120 7 0 300 1 2 298 0 2 129 1 0 92 3 12 13 1 5 433 0 1 138 0 1 170 1 0 31 0 1 16 1 5 89 0 1 181 0 4 119 473 0 261 0 1 778 0 1 563 0 1 69 2 3 13 0 1 337 0 1 311 4 0 102 11 12 63 chain 566790 chr4 191154276 + 19079521 19085552 L1HS 6032 - 0 6030 101 767 2 1 5262 chain 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chr4 191154276 + 19204331 19204672 L1PA10 4194 + 3821 4161 103364 168 0 3 90 1 0 34 4 1 24 1 2 7 1 0 11 chain 7095 chr4 191154276 + 19210391 19210466 L1PA4 6152 - 16 91 176799 75 chain 16513 chr4 191154276 + 19230862 19231070 MER4D1 891 + 200 410 136884 17 0 2 191 chain 24067 chr4 191154276 + 19240414 19240701 AluYf5 307 + 0 303 109947 132 15 30 44 0 1 96 chain 28243 chr4 191154276 + 19251121 19251475 THE1A 353 + 0 353 92140 110 2 1 242 chain 116271 chr4 191154276 + 19251475 19252958 THE1A-int 1579 + 0 1572 32353 35 0 2 7 2 1 115 3 89 663 1 3 188 1 0 4 0 1 139 0 1 264 1 0 60 chain 28123 chr4 191154276 + 19252965 19253322 THE1A 353 + 0 353 92561 110 1 0 202 4 1 40 chain 84224 chr4 191154276 + 19256960 19257990 MER11B 1079 - 14 1079 41808 68 0 10 214 1 3 29 1 2 401 5 22 90 1 6 220 chain 8729 chr4 191154276 + 19284075 19284187 L1PA7 6471 + 4822 4938 167032 15 0 4 97 chain 2349 chr4 191154276 + 19284207 19284235 L1PA7 6471 + 4957 4985 234810 28 chain 95250 chr4 191154276 + 19284246 19285409 L1PA7 6471 + 4993 6158 38018 631 0 1 511 0 1 21 chain 24805 chr4 191154276 + 19285413 19285709 L1PA7 6471 + 6158 6454 105864 296 chain 22046 chr4 191154276 + 19319581 19319861 AluSc8 310 + 19 300 120041 117 8 9 155 chain 270562 chr4 191154276 + 19336276 19339199 L1PA2 6032 - 0 2924 15159 2215 0 1 708 chain 70139 chr4 191154276 + 19341234 19342188 L1P3 4156 - 17 970 48331 24 2 1 7 2 0 184 0 1 91 24 10 23 0 1 4 1 0 49 0 1 140 1 0 53 0 4 46 1 0 11 9 8 241 0 2 26 0 11 15 chain 393056 chr4 191154276 + 19396295 19400679 L1PA3long 6157 + 1745 6149 10352 437 0 2 101 2 1 148 0 3 349 0 4 98 1 0 1842 0 1 557 1 0 457 0 13 391 chain 5491 chr4 191154276 + 19419337 19419406 L1P1 4361 - 263 343 190124 18 0 11 51 chain 6391 chr4 191154276 + 19419685 19419769 L1P3 4156 - 17 98 182091 23 1 0 8 2 0 50 chain 178772 chr4 191154276 + 19419770 19421820 L1PA5 6144 + 4082 6132 21097 1899 20 20 131 chain 3382 chr4 191154276 + 19454496 19454554 L1MC1 2226 - 1318 1376 217430 26 1 2 10 1 0 20 chain 18995 chr4 191154276 + 19455086 19455430 THE1D 372 + 8 357 130124 96 1 0 31 82 89 116 1 0 17 chain 22224 chr4 191154276 + 19482737 19483016 L1PA7 6471 - 4 283 119243 8 2 0 180 0 2 89 chain 22084 chr4 191154276 + 19503600 19503950 THE1C 375 + 0 351 119873 107 0 1 72 48 51 8 2 0 75 1 0 37 chain 50510 chr4 191154276 + 19557721 19558307 LTR14C 587 + 0 587 58643 180 0 1 406 chain 8062 chr4 191154276 + 19587022 19587277 MLT1B 390 + 143 390 170681 31 117 113 47 15 11 45 chain 59406 chr4 191154276 + 19595330 19595995 L1PA3long 6157 + 5491 6157 53172 348 0 1 317 chain 30195 chr4 191154276 + 19603849 19604177 L1PA3long 6157 - 258 586 84206 328 chain 19841 chr4 191154276 + 19604182 19604407 L1PA3long 6157 + 5932 6157 127679 225 chain 9964 chr4 191154276 + 19609242 19609363 MLT1A0 366 - 21 142 160759 121 chain 164800 chr4 191154276 + 19611957 19613797 L1PA4 6152 + 4293 6146 22678 747 0 12 355 0 1 738 chain 12370 chr4 191154276 + 19628121 19628327 L1PA13 3608 - 123 317 150754 17 1 0 20 10 6 48 2 0 7 1 0 28 3 0 25 1 0 43 chain 4814 chr4 191154276 + 19628463 19628547 MER20 218 - 70 150 197183 31 2 0 21 15 13 15 chain 38427 chr4 191154276 + 19635823 19636337 MER9a3 513 + 0 513 71542 19 0 1 90 0 1 44 13 12 89 1 0 177 2 3 15 2 0 62 chain 227852 chr4 191154276 + 19639865 19642360 L1PA3long 6157 - 7 2504 17432 70 0 2 2425 chain 29313 chr4 191154276 + 19643125 19643436 AluYa5 310 + 0 310 87480 132 1 0 178 chain 37415 chr4 191154276 + 19649566 19650085 THE1B-int 1605 - 1069 1582 72941 85 46 29 283 0 8 16 1 4 88 chain 6816 chr4 191154276 + 19665359 19665511 MLT1A 405 + 44 189 178829 5 4 0 52 41 39 35 2 1 13 chain 315048 chr4 191154276 + 19670352 19674643 L1PA7 6471 + 153 6469 12805 26 33 32 72 66 227 85 8 16 102 0 113 37 2 10 76 7 8 10 4 0 292 1 41 188 0 3 5 3 0 47 0 1 216 8 13 211 0 1 49 0 1 142 49 5 307 1 0 44 1 0 106 13 0 58 1 3 192 3 1755 156 1 0 152 2 0 464 5 6 82 0 3 96 9 8 105 0 3 388 6 5 193 22 16 145 chain 45146 chr4 191154276 + 19681520 19682084 L1PA7 6471 - 5 675 62871 157 5 6 104 0 104 6 0 1 292 chain 5233 chr4 191154276 + 19683922 19683984 L1MC 810 - 297 359 192695 62 chain 74087 chr4 191154276 + 19719454 19720270 L1PA3long 6157 - 5 822 46467 762 0 1 54 chain 40914 chr4 191154276 + 19720270 19720723 L1PA3long 6157 + 4904 5357 67662 453 chain 45410 chr4 191154276 + 19726005 19726617 L1PA8 5853 - 0 611 62582 61 6 7 25 1 0 19 2 1 35 3 4 8 2 0 13 1 2 70 2 0 44 1 0 41 1 3 191 0 1 86 chain 71643 chr4 191154276 + 19733662 19734450 L1PA4 6152 - 1374 2162 47630 788 chain 116319 chr4 191154276 + 19734450 19735802 L1PA4 6152 + 4784 6143 32336 345 4 0 136 10 15 18 0 4 54 0 1 460 1 2 324 chain 24929 chr4 191154276 + 19761460 19761753 L1PA8A 6298 + 5916 6210 105170 269 0 1 24 chain 66791 chr4 191154276 + 19772343 19773189 LTR12 884 + 0 869 49738 317 30 31 7 0 22 349 0 1 5 1 0 137 chain 15584 chr4 191154276 + 19781479 19781673 L1PA7 6471 - 6 200 139632 194 chain 34030 chr4 191154276 + 19781679 19782151 L1P3 4156 - 3674 4153 77580 78 1 0 84 1 0 59 37 46 212 chain 38146 chr4 191154276 + 19795531 19796072 MLT2A2 560 + 15 560 71919 188 20 31 287 32 25 14 chain 27201 chr4 191154276 + 19799027 19799353 L1PA8A 6298 + 5965 6291 95596 216 1 0 76 0 1 33 chain 59309 chr4 191154276 + 19822479 19823147 L1PA5 6144 + 5477 6143 53218 655 3 1 10 chain 44456 chr4 191154276 + 19861392 19861911 L1PA7 6471 - 10 527 63630 144 1 0 58 1 0 315 chain 482917 chr4 191154276 + 19864427 19870589 L1PA5 6144 - 0 6144 7625 857 6 5 450 10 9 201 3 0 207 7 11 52 0 8 111 0 6 453 0 1 235 24 41 17 53 2 67 0 1 114 0 3 46 0 1 632 0 2 124 0 7 174 0 1 1135 15 6 16 11 13 56 2 5 41 1 0 4 1 2 74 25 0 68 3 4 12 0 1 345 18 19 291 1 0 76 11 25 113 chain 177038 chr4 191154276 + 19889618 19892801 HERVH48-int 3304 + 187 3245 21248 9 3 0 28 1 0 33 55 35 4 1 0 64 8 4 5 1 0 72 1 0 15 26 14 80 1 0 9 3 1 66 20 0 3 1 0 16 8 4 13 1 0 5 6 4 16 4 1 5 0 3 11 29 27 38 8 11 24 1 0 69 25 17 104 0 2 9 6 3 10 1 0 21 1 0 15 2 0 31 2 0 3 2 0 19 2 0 7 1 0 16 1 0 19 2 0 27 41 31 122 1 0 11 1 0 6 1 0 221 2 1 88 1 0 271 1 2 16 1 0 245 2 1 13 7 5 64 6 5 12 2 1 47 1 0 202 0 1 22 8 7 19 1 0 44 4 2 19 6 0 18 1 7 17 2 0 7 2 0 11 2 0 5 176 133 26 12 4 10 1 0 23 2 0 5 1 0 43 34 117 62 103 77 23 chain 392237 chr4 191154276 + 19917311 19921765 L1PA5 6144 - 12 4484 10387 1016 0 1 114 0 1 377 0 1 186 0 1 279 0 1 790 0 1 583 0 4 396 0 4 61 0 4 652 chain 143964 chr4 191154276 + 19921767 19923427 L1PA5 6144 + 3 1663 25481 1660 chain 124458 chr4 191154276 + 19950587 19951926 L1PA2 6032 - 0 1339 29524 1339 chain 138941 chr4 191154276 + 19951926 19953421 L1PA2 6032 + 3196 4694 26321 356 0 3 1139 chain 21301 chr4 191154276 + 19963699 19963953 AluYk4 311 + 57 311 122859 254 chain 19344 chr4 191154276 + 19977056 19977398 THE1B 368 - 0 355 129096 123 19 31 10 8 6 26 1 0 52 44 43 35 0 5 24 chain 7324 chr4 191154276 + 19981574 19981718 MLT1B 390 + 239 378 175275 80 42 37 22 chain 78070 chr4 191154276 + 20005454 20006544 LTR12E 1234 + 0 1109 44482 23 10 1 149 0 2 280 7 4 182 0 119 80 9 20 223 101 0 26 chain 10910 chr4 191154276 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1 104 28 12 162 1 2 90 0 1 12 4 2 8 1 0 23 chain 29763 chr4 191154276 + 20095866 20096275 MER51B 395 + 0 395 85596 40 22 9 181 1 0 9 18 18 138 chain 151590 chr4 191154276 + 20105978 20107662 L1PA4 6152 - 1 1690 24387 843 0 4 526 0 1 315 chain 48223 chr4 191154276 + 20107662 20108208 L1PA4 6152 + 3906 4454 60234 415 0 1 35 0 1 96 chain 30327 chr4 191154276 + 20110413 20110811 MLT2A1 477 + 0 394 83852 113 0 1 56 4 1 32 6 8 172 4 0 11 chain 89895 chr4 191154276 + 20114770 20115767 L1PA3long 6157 - 0 996 39684 767 1 0 229 chain 5343 chr4 191154276 + 20137233 20137322 MLT1D 503 - 358 446 191616 29 15 14 45 chain 307764 chr4 191154276 + 20144256 20148148 L1PA7 6471 + 2575 6459 13099 57 15 0 207 12 0 67 8 0 255 5 4 384 11 15 291 0 16 138 0 4 4 1 0 59 4 1 21 0 1 1385 0 1 62 0 1 45 0 1 20 1 4 665 47 49 85 1 0 42 chain 48976 chr4 191154276 + 20150397 20150944 L1PA4 6152 + 5608 6151 59768 122 1 0 416 3 0 5 chain 12584 chr4 191154276 + 20152126 20152295 THE1C 375 - 205 375 149906 31 0 4 15 3 0 120 chain 2835 chr4 191154276 + 20180200 20180313 LTR12C 1709 - 672 785 167591 20 0 41 22 69 28 2 chain 14993 chr4 191154276 + 20180313 20180544 LTR12C 1709 - 578 777 141343 13 41 9 177 chain 27040 chr4 191154276 + 20221500 20221860 MLT2A1 477 - 94 469 96146 110 9 10 8 0 7 73 8 13 112 0 2 40 chain 2902 chr4 191154276 + 20233943 20233975 L1MB8 1703 - 41 73 227006 32 chain 6353 chr4 191154276 + 20336751 20336832 THE1B 368 - 286 368 182359 27 0 1 54 chain 36776 chr4 191154276 + 20337876 20338314 L1PA5 6144 + 5706 6144 73837 438 chain 5387 chr4 191154276 + 20339082 20339169 THE1B 368 - 251 368 191121 34 0 14 14 1 16 13 1 2 24 chain 43272 chr4 191154276 + 20348143 20348699 MLT2A2 560 - 0 560 65090 6 0 4 363 0 1 6 1 0 180 chain 26596 chr4 191154276 + 20378309 20378653 L1PA6 6164 + 5818 6161 97677 186 6 0 6 16 23 121 2 0 7 chain 4971 chr4 191154276 + 20389091 20389176 Charlie1b 519 - 297 383 195468 42 13 14 30 chain 77159 chr4 191154276 + 20411394 20412794 L1PA11 4918 - 443 1493 44880 58 0 1 10 3 0 11 1 0 68 2 1 71 1 0 4 0 1 203 349 0 274 0 3 57 10 11 6 1 0 158 0 4 10 8 4 95 chain 15812 chr4 191154276 + 20545610 20545803 L1PA6 6164 + 5968 6161 138920 193 chain 7550 chr4 191154276 + 20558226 20558352 Tigger1 2417 + 369 496 173876 40 19 20 67 chain 84332 chr4 191154276 + 20628822 20629930 MER4-int 2692 - 19 1140 41776 129 0 5 52 0 3 195 9 8 10 0 1 256 2 0 13 2 0 142 1 0 174 0 2 54 3 11 66 chain 270691 chr4 191154276 + 20633613 20637189 HERVH-int 3825 - 1 3825 15154 239 3 7 129 1 4 6 3 0 101 150 362 148 1 0 410 12 13 471 6 5 213 4 31 215 4 3 38 9 0 184 0 21 441 5 4 80 2 1 28 27 0 14 1 0 20 8 5 13 1 0 20 22 53 15 1 0 197 1 0 333 chain 27928 chr4 191154276 + 20637204 20637601 LTR7 482 - 13 482 93243 36 12 14 155 8 40 109 8 46 69 chain 81930 chr4 191154276 + 20642554 20643687 L1PB2 3958 - 120 1245 42791 59 22 26 74 1 0 62 1 0 72 1 0 86 1 2 6 5 0 12 2 0 62 5 0 14 1 0 56 2 0 122 0 1 20 0 2 125 4 7 106 1 0 211 chain 24920 chr4 191154276 + 20651907 20652221 THE1C 375 - 60 375 105224 232 2 3 80 chain 24525 chr4 191154276 + 20657072 20657436 THE1D 372 + 0 372 107410 160 27 34 12 17 18 148 chain 123663 chr4 191154276 + 20657436 20659222 L1PB2 3958 + 2121 3836 29820 204 11 10 51 1 0 9 50 0 81 1 0 5 20 0 10 0 1 273 0 6 95 0 1 57 1 0 346 0 5 32 2 0 53 0 3 12 4 0 64 3 1 11 4 0 78 0 1 8 1 0 8 0 1 70 1 0 22 0 3 37 1 0 35 1 0 21 0 2 5 1 0 14 2 0 8 12 11 61 chain 174279 chr4 191154276 + 20661652 20663635 L1PA3long 6157 - 0 1931 21566 350 52 0 4 1 0 503 1 0 8 0 4 550 2 0 512 chain 258251 chr4 191154276 + 20670304 20673141 L1PA3long 6157 - 9 2848 15797 488 0 1 921 2 0 283 0 3 1143 chain 3424 chr4 191154276 + 20673451 20673490 MLT1B 390 + 337 376 216679 39 chain 33532 chr4 191154276 + 20674938 20675355 MLT2A1 477 + 0 446 78345 18 0 6 145 4 1 213 0 26 37 chain 22369 chr4 191154276 + 20693011 20693297 AluSc5 308 - 18 297 118634 167 7 0 112 chain 93629 chr4 191154276 + 20715264 20716320 L1P1 4361 - 1362 2416 38463 222 1 0 622 1 0 210 chain 65791 chr4 191154276 + 20716320 20717056 L1PA3long 6157 + 5420 6157 50200 416 0 1 320 chain 4436 chr4 191154276 + 20717853 20717908 MER77 626 - 113 168 201506 55 chain 532119 chr4 191154276 + 20717979 20724089 L1PA5 6144 - 6 6144 3947 140 0 15 577 0 1 779 1 0 281 0 4 67 0 1 342 6 7 39 0 2 89 5 1 110 0 1 108 0 1 322 1 4 51 1 0 175 1 0 675 0 2 31 1 0 378 0 4 115 0 1 1815 chain 496871 chr4 191154276 + 20740248 20746392 L1PA5 6144 + 3 6135 7015 103 2 1 23 0 14 121 23 24 176 0 4 161 0 3 185 0 17 115 25 0 118 8 11 84 15 6 270 0 9 198 1 4 21 1 0 56 0 4 104 1 6 352 1 5 115 2 1 137 0 1 351 15 17 565 0 1 116 1 0 178 0 3 301 0 3 307 1 0 53 0 2 90 63 10 114 2 0 706 3 7 23 0 4 265 7 11 203 19 10 13 0 1 183 2 1 145 chain 48438 chr4 191154276 + 20747555 20748155 L1PA7 6471 + 5863 6470 60158 31 0 2 261 6 11 302 chain 21893 chr4 191154276 + 20783055 20783387 THE1A 353 - 19 353 120652 145 13 16 35 30 31 13 1 0 46 0 1 34 2 0 13 chain 122283 chr4 191154276 + 20783393 20784961 THE1A-int 1579 - 6 1579 30285 505 5 3 228 0 6 82 0 1 75 19 17 638 1 3 15 chain 23470 chr4 191154276 + 20784961 20785300 THE1A 353 - 0 340 113271 74 1 0 154 28 29 48 0 1 34 chain 3530 chr4 191154276 + 20787365 20787406 L1PREC2 3366 + 3007 3048 214885 41 chain 23840 chr4 191154276 + 20795176 20795476 MER1A 529 - 0 306 111256 62 1 7 237 chain 24633 chr4 191154276 + 20795477 20795819 THE1B 368 + 0 347 106812 172 10 9 10 3 1 114 5 13 28 chain 5177 chr4 191154276 + 20823527 20823630 L1PB2 3958 - 120 226 193264 18 0 3 13 5 8 18 5 4 21 2 0 21 chain 36616 chr4 191154276 + 20823632 20824206 L1PB2 3958 + 3164 3714 74074 16 9 9 118 3 1 53 1 0 13 5 0 65 6 0 13 11 7 86 1 0 21 7 3 4 0 1 43 7 6 58 2 1 32 chain 181137 chr4 191154276 + 20853715 20856248 L1PB1 5432 + 2925 5420 20888 43 0 4 269 7 8 460 0 1 16 3 6 116 9 0 64 14 15 79 8 0 199 7 6 229 7 1 168 5 9 9 3 0 76 0 2 107 1 4 287 7 6 5 1 0 24 1 0 9 1 0 9 17 11 51 6 5 13 6 5 40 1 0 15 3 0 7 14 5 19 8 5 10 3 4 24 1 0 21 1 0 13 1 0 16 chain 25559 chr4 191154276 + 20869356 20869652 L1PA4 6152 + 5844 6152 101936 194 0 12 102 chain 10787 chr4 191154276 + 20885845 20886063 L1PA8 5853 - 0 192 157046 93 1 0 17 54 31 24 1 0 5 6 5 17 chain 29896 chr4 191154276 + 20905065 20905439 MER4E1 777 + 387 770 85114 146 3 12 225 chain 3662 chr4 191154276 + 20924209 20924249 MLT2B1 522 + 482 522 212549 40 chain 54460 chr4 191154276 + 20951032 20951641 L1PA3long 6157 + 5548 6156 56063 604 1 0 4 chain 21010 chr4 191154276 + 20957883 20958138 AluY 311 + 38 293 123872 255 chain 143892 chr4 191154276 + 20968912 20970555 L1PA6 6164 + 4513 6160 25498 799 0 4 844 chain 8062 chr4 191154276 + 20974277 20974380 LTR12_ 688 - 327 429 170687 80 1 0 22 chain 5523 chr4 191154276 + 21021102 21021171 MLT1B 390 - 286 355 189813 69 chain 405448 chr4 191154276 + 21073279 21077907 L1PA5 6144 - 12 4647 9930 833 1 5 15 6 0 786 1 2 141 0 8 51 0 1 275 10 10 1692 1 0 345 1 2 127 0 1 268 2 0 73 chain 7555 chr4 191154276 + 21093202 21093292 MLT1A0 366 - 11 102 173840 82 0 1 8 chain 9706 chr4 191154276 + 21100437 21100587 L1PA11 4918 + 4363 4507 162055 25 7 6 13 2 0 63 7 5 14 1 0 18 chain 549480 chr4 191154276 + 21105209 21111369 L1PA3long 6157 - 0 6151 1521 589 9 0 927 1 0 345 0 1 778 0 2 86 3 0 1110 1 0 574 1 0 296 0 3 1440 chain 5033 chr4 191154276 + 21122509 21122595 MLT1B 390 - 304 390 194796 51 9 11 5 2 0 19 chain 21441 chr4 191154276 + 21132999 21133260 AluY 311 + 49 310 122365 261 chain 568536 chr4 191154276 + 21161013 21167044 L1HS 6032 + 0 6032 10 74 0 1 5957 chain 54299 chr4 191154276 + 21200692 21201330 L1PA5 6144 - 495 1138 56161 301 8 13 329 chain 42809 chr4 191154276 + 21201330 21201810 L1PA5 6144 + 5650 6130 65643 480 chain 10664 chr4 191154276 + 21210859 21211146 L1MA5A 2387 - 14 268 157548 13 2 0 16 56 45 4 1 0 59 52 21 12 0 1 17 1 0 24 0 12 30 chain 14172 chr4 191154276 + 21222011 21222176 L1PA5 6144 + 5963 6128 143976 165 chain 260120 chr4 191154276 + 21239114 21242008 L1PA4 6152 + 3249 6151 15691 266 0 1 842 0 2 275 2 6 684 0 1 100 0 1 672 1 0 52 chain 34151 chr4 191154276 + 21253263 21253642 L1PA3long 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6144 - 12 1506 27471 246 0 1 1247 chain 4054 chr4 191154276 + 21401222 21401273 MER53 195 - 5 56 206574 51 chain 23757 chr4 191154276 + 21407465 21407746 AluSp 311 - 19 300 111727 281 chain 254733 chr4 191154276 + 21445529 21448395 L1PA5 6144 + 3262 6142 15997 1018 0 2 328 0 1 489 0 1 713 1 0 216 0 11 101 chain 43249 chr4 191154276 + 21459621 21460094 L1PA2 6032 - 6 479 65119 473 chain 23359 chr4 191154276 + 21463838 21464180 THE1B 368 - 10 368 113879 65 1 0 97 0 4 19 9 7 35 2 0 7 0 2 58 5 20 44 chain 86960 chr4 191154276 + 21483536 21484493 L1P1 4361 - 1821 2777 40799 233 1 0 723 chain 18089 chr4 191154276 + 21484495 21484706 L1PA5 6144 + 5766 5989 132620 135 0 12 76 chain 12993 chr4 191154276 + 21484706 21484848 L1PA5 6144 + 5990 6132 148268 142 chain 29313 chr4 191154276 + 21521538 21521914 MLT2A1 477 - 101 477 87503 12 0 5 159 0 1 29 4 1 100 2 0 35 1 0 34 chain 51319 chr4 191154276 + 21547008 21547625 L1PA7 6471 - 3 618 58089 7 4 0 162 0 1 201 0 1 243 chain 52139 chr4 191154276 + 21596609 21597328 L1PA8 5853 - 0 714 57532 92 2 1 16 9 8 43 7 5 9 2 1 70 3 1 45 1 0 275 0 1 90 2 4 53 chain 3589 chr4 191154276 + 21597348 21597391 L1PA8 5853 + 5078 5120 213834 16 1 0 26 chain 7438 chr4 191154276 + 21612330 21612421 THE1C 375 - 35 126 174533 91 chain 41407 chr4 191154276 + 21612443 21612928 L1PA7 6471 - 1 485 67406 458 1 0 26 chain 76967 chr4 191154276 + 21637081 21637922 L1PA2 6032 + 5188 6028 44990 766 1 0 74 chain 28241 chr4 191154276 + 21669603 21669963 L1PA8A 6298 + 5931 6291 92148 46 3 1 180 2 4 13 8 0 8 0 8 100 chain 32095 chr4 191154276 + 21671857 21672204 L1PA2 6032 + 5682 6029 80701 347 chain 16006 chr4 191154276 + 21673711 21673906 L1PA7 6471 + 6266 6461 138336 195 chain 9793 chr4 191154276 + 21683267 21683404 MSTA 426 - 0 145 161632 107 5 8 6 0 5 19 chain 17089 chr4 191154276 + 21686299 21686494 L1PA5 6144 - 6 201 135353 195 chain 48894 chr4 191154276 + 21688428 21688955 L1PA2 6032 + 5505 6032 59811 527 chain 8188 chr4 191154276 + 21705038 21705127 L1PA5 6144 + 5836 5925 170021 89 chain 46264 chr4 191154276 + 21722155 21722698 L1PA5 6144 - 0 556 61803 11 2 1 142 0 1 76 0 12 154 0 1 158 chain 11564 chr4 191154276 + 21753815 21754084 THE1D 372 - 2 264 154049 95 8 5 24 87 84 30 1 0 24 chain 463332 chr4 191154276 + 21771645 21777800 L1PA8A 6298 - 9 6167 8281 189 0 2 200 0 13 4 1 0 199 0 4 100 2 8 79 0 3 5 1 0 119 0 1 79 0 1 121 0 1 328 10 8 179 0 16 226 0 3 10 13 15 447 1 0 50 0 1 177 1 0 35 11 15 199 6 9 142 0 1 163 0 2 444 0 1 118 0 10 60 41 6 50 11 13 43 0 2 161 5 7 599 1 0 9 16 10 378 1 0 79 1 0 9 11 5 350 5 4 231 7 17 86 7 6 4 1 0 11 1 0 15 2 0 74 6 0 21 6 5 40 15 10 14 27 23 12 7 4 15 2 0 12 1 0 7 2 1 11 2 1 9 2 1 16 chain 13202 chr4 191154276 + 21778696 21778920 THE1D 372 + 146 372 147457 19 7 12 4 1 0 8 4 0 4 1 0 29 21 24 126 chain 5317 chr4 191154276 + 21783132 21783197 L1MDa 1598 + 1188 1253 191847 65 chain 19773 chr4 191154276 + 21785590 21785906 THE1D 372 - 0 372 127896 32 1 0 135 41 53 47 0 1 10 1 43 30 0 2 19 chain 42265 chr4 191154276 + 21795404 21795908 L1PA5 6144 + 5631 6144 66313 236 0 11 254 3 1 11 chain 75696 chr4 191154276 + 21818792 21819874 MER11A 1151 + 0 1147 45652 85 0 91 44 7 11 63 4 0 122 1 2 25 0 1 87 6 7 146 5 6 7 0 1 112 0 26 26 43 0 24 23 4 30 0 1 145 7 11 70 chain 226184 chr4 191154276 + 21834214 21836704 L1PA3long 6157 - 0 2489 17520 17 1 0 2472 chain 21143 chr4 191154276 + 21861001 21861262 AluY 311 + 52 294 123396 76 19 0 166 chain 25508 chr4 191154276 + 21872931 21873218 L1PA5 6144 + 5650 5937 102186 287 chain 21271 chr4 191154276 + 21881367 21881709 THE1C 375 + 0 347 122955 39 1 6 60 34 38 38 18 14 152 chain 13179 chr4 191154276 + 21907122 21907265 L1PA4 6152 + 5783 5926 147547 143 chain 9524 chr4 191154276 + 21915015 21915200 MLT1A1 405 + 174 385 162961 11 0 2 34 12 23 20 22 34 61 6 7 19 chain 8003 chr4 191154276 + 21922278 21922387 MER2 342 + 222 329 171035 19 2 0 88 chain 40679 chr4 191154276 + 21926709 21927165 L1PA4 6152 - 1 458 68324 112 0 1 344 chain 56554 chr4 191154276 + 21932903 21933555 L1PA4 6152 - 11 653 54820 346 11 1 295 chain 5214 chr4 191154276 + 21955483 21955547 MLT1B 390 + 276 340 192882 64 chain 28262 chr4 191154276 + 21989144 21989597 MER4A1 472 + 0 472 92074 100 7 7 24 3 0 51 5 6 47 53 74 163 chain 143852 chr4 191154276 + 21998272 22000000 L1P1 4361 + 6 1730 25506 397 7 3 1324 chain 376303 chr4 191154276 + 22000000 22004397 L1PA5 6144 + 1729 6142 10872 1447 1 0 207 1 9 10 0 1 153 0 1 125 0 1 4 1 0 27 7 6 9 0 1 472 1 8 39 0 1 92 1 5 947 0 1 840 6 0 7 chain 4550 chr4 191154276 + 22005137 22005285 L1MC1 2226 + 1992 2126 200210 51 76 63 16 1 0 4 chain 512316 chr4 191154276 + 22036475 22042940 L1PA6 6164 - 2 6159 5941 6 3 0 145 0 1 713 0 4 159 5 6 1232 0 1 102 0 1 88 0 2 97 0 1 72 6 0 211 0 1 130 0 1 437 0 1 426 6 1 287 0 1 21 0 1 60 1 0 85 322 0 83 0 1 190 2 1 143 15 24 142 0 1 195 0 3 780 0 1 55 1 0 245 chain 29773 chr4 191154276 + 22050405 22050722 AluYb8 318 - 2 318 85572 184 1 0 132 chain 27796 chr4 191154276 + 22050722 22051073 THE1B-int 1605 - 1254 1605 93711 325 0 2 5 2 0 19 chain 6129 chr4 191154276 + 22051074 22051143 THE1B 368 - 1 70 184193 69 chain 25364 chr4 191154276 + 22075783 22076128 THE1A 353 + 0 353 102862 110 1 0 92 1 0 12 0 2 84 1 2 6 0 7 38 chain 31426 chr4 191154276 + 22076961 22077350 THE1A-int 1579 + 1180 1570 81774 142 1 2 246 chain 24526 chr4 191154276 + 22080536 22080827 L1PA4 6152 - 0 292 107404 147 4 5 140 chain 70292 chr4 191154276 + 22080827 22081602 L1PA4 6152 + 5089 5864 48273 775 chain 11774 chr4 191154276 + 22084737 22084870 L1PA5 6144 + 5999 6132 153156 133 chain 3671 chr4 191154276 + 22087553 22087593 LTR32 486 + 12 52 212357 40 chain 75142 chr4 191154276 + 22087736 22088727 MER11A 1151 - 0 997 45951 60 7 6 18 0 1 34 1 2 35 0 1 99 1 0 33 3 0 30 0 1 13 0 1 85 0 1 46 0 1 124 1 0 171 0 1 58 0 2 27 8 6 64 0 4 73 chain 33063 chr4 191154276 + 22108176 22108549 L1PA2 6032 - 0 366 79109 134 7 0 232 chain 84498 chr4 191154276 + 22108549 22109453 L1PA2 6032 + 4760 5664 41716 904 chain 24385 chr4 191154276 + 22119172 22119453 AluY 311 + 16 297 108161 106 0 1 4 1 0 170 chain 507451 chr4 191154276 + 22124689 22130923 L1PA5 6144 + 0 6139 6370 135 7 33 185 5 28 667 9 10 111 9 0 256 1 3 33 0 1 246 0 1 128 0 4 233 0 6 46 186 24 163 4 1 199 0 1 614 0 10 38 2 1 503 0 3 44 15 0 150 1 2 378 0 8 142 0 9 319 0 3 617 4 0 784 chain 127412 chr4 191154276 + 22145576 22147462 L1PB1 5432 - 32 1881 28710 8 1 0 22 1 0 24 2 0 14 1 0 5 2 0 19 29 17 10 1 0 43 2 1 16 2 1 42 27 21 13 17 15 14 50 36 273 0 1 123 0 5 6 8 9 41 2 0 385 0 3 245 0 2 248 25 17 65 10 11 42 12 16 36 chain 9865 chr4 191154276 + 22147895 22148028 L1MA3 4352 + 1918 2048 161257 125 3 0 5 chain 546251 chr4 191154276 + 22148050 22154080 L1PA2 6032 + 1 6032 1914 71 0 1 242 0 3 424 1 0 19 7 0 338 0 3 282 0 1 315 0 1 4165 5 0 7 0 5 154 chain 15802 chr4 191154276 + 22172981 22173345 THE1B 368 - 0 366 138951 119 62 57 13 11 10 43 18 19 15 38 45 45 chain 51073 chr4 191154276 + 22195644 22196260 L1P3 4156 - 18 631 58267 22 1 0 9 2 0 176 0 1 235 1 0 170 chain 44117 chr4 191154276 + 22196278 22196842 PABL_B 668 + 102 668 64063 248 2 1 92 1 3 65 1 2 155 chain 21563 chr4 191154276 + 22199722 22199978 L1PA7 6471 - 364 622 121914 10 0 3 53 1 0 192 chain 29702 chr4 191154276 + 22199981 22200338 L1PA7 6471 + 6112 6467 85823 195 11 9 151 chain 120903 chr4 191154276 + 22208105 22209473 L1PA5 6144 - 5 1379 30726 838 0 4 199 0 1 82 0 1 249 chain 6477 chr4 191154276 + 22209475 22209547 L1PA5 6144 + 3540 3612 181415 72 chain 100901 chr4 191154276 + 22209547 22210678 L1PA5 6144 + 3616 4748 36537 75 1 0 116 0 1 503 0 1 436 chain 57314 chr4 191154276 + 22215961 22216682 L1P1 4361 + 2921 3653 54330 27 0 1 110 0 3 114 0 1 24 1 0 39 8 13 302 0 2 96 chain 4133 chr4 191154276 + 22227738 22227789 L1PA2 6032 + 5982 6031 205453 37 2 0 12 chain 209476 chr4 191154276 + 22261777 22264447 L1PA8 5853 + 3155 5853 18525 62 0 1 171 10 7 27 0 12 237 0 1 351 1 0 560 10 14 36 7 24 196 0 5 151 2 0 233 0 1 4 1 0 315 4 0 6 0 3 36 2 0 70 0 1 10 1 0 4 8 7 40 2 1 19 2 1 92 chain 392802 chr4 191154276 + 22270822 22276616 L1PB1 5432 + 30 5404 10369 371 2 0 5 3 2 73 7 8 113 1 0 117 0 1 144 0 1 17 1 0 5 0 1 322 9 0 10 0 1 181 9 0 166 0 4 203 0 1 447 0 1 275 4 5 78 0 5 18 191 26 79 4 1 5 0 3 10 8 5 6 0 2 24 0 3 70 40 11 153 16 7 4 0 1 33 8 11 32 0 1 626 72 20 47 0 3 174 5 6 23 0 1 45 2 1 135 138 14 11 28 9 128 0 11 25 14 14 247 4 0 172 2 0 299 1 0 11 1 0 24 1 0 9 5 4 7 4 0 11 2 0 51 2 1 16 1 0 44 1 0 15 3 0 9 10 0 13 11 10 4 1 0 14 2 0 24 1 0 21 1 0 13 chain 26364 chr4 191154276 + 22285568 22285925 THE1C 375 + 3 375 98559 105 0 12 64 1 2 47 10 13 104 1 0 25 chain 8357 chr4 191154276 + 22296847 22296955 L1PA8 5853 + 4903 5009 169086 96 2 0 10 chain 5927 chr4 191154276 + 22296957 22297032 L1PA8 5853 + 5009 5084 185915 75 chain 49955 chr4 191154276 + 22297033 22297626 L1PA8 5853 + 5088 5678 59055 476 1 0 44 2 0 70 chain 8575 chr4 191154276 + 22297646 22297798 L1PA8 5853 + 5696 5853 167875 5 0 1 38 2 1 19 2 1 22 16 22 48 chain 315968 chr4 191154276 + 22308774 22312254 L1PA3long 6157 + 2683 6157 12763 1032 10 2 491 0 2 1947 chain 25980 chr4 191154276 + 22318329 22318618 AluSc5 308 - 9 298 100095 289 chain 67336 chr4 191154276 + 22320397 22321187 L1PA7 6471 + 5664 6465 49514 29 0 3 140 6 8 376 0 7 230 1 0 8 chain 19554 chr4 191154276 + 22327902 22328287 THE1D 372 - 0 372 128509 126 2 8 12 56 42 52 8 12 9 1 0 48 16 7 31 5 6 19 chain 17850 chr4 191154276 + 22331095 22331317 L1PA16 3655 - 77 299 133243 222 chain 4946 chr4 191154276 + 22334477 22334538 Tigger3b 1229 + 43 104 195746 61 chain 48288 chr4 191154276 + 22336466 22337056 LTR66 600 - 0 600 60253 95 0 16 86 6 0 403 chain 75771 chr4 191154276 + 22337312 22338184 L1PA5 6144 - 3 884 45609 6 4 0 51 0 11 356 0 2 455 chain 26262 chr4 191154276 + 22338184 22338473 L1PA5 6144 + 4961 5250 98250 289 chain 32699 chr4 191154276 + 22339917 22340696 HERVL66-int 1251 - 373 1060 79693 32 22 17 17 7 0 18 55 54 60 0 14 26 1 0 50 3 0 28 17 6 36 0 1 23 1 0 92 0 1 29 30 18 12 21 6 16 10 5 17 92 45 64 chain 46398 chr4 191154276 + 22341015 22341594 LTR66 600 - 10 600 61690 85 0 16 74 6 0 95 0 2 303 1 0 15 chain 11408 chr4 191154276 + 22343798 22343927 L1PA7 6471 + 6325 6454 154660 129 chain 3197 chr4 191154276 + 22354553 22354595 L1PA12 2803 + 1662 1704 220996 42 chain 7753 chr4 191154276 + 22371105 22371271 L1MA5 2750 + 1201 1360 172586 96 6 0 6 3 0 5 36 38 14 chain 42036 chr4 191154276 + 22375176 22375706 MER41A 554 + 15 546 66575 405 1 2 124 chain 83101 chr4 191154276 + 22380082 22381100 L1P3 4156 - 20 1043 42290 23 2 1 5 2 0 214 4 0 162 0 10 216 5 6 95 0 1 290 chain 23730 chr4 191154276 + 22381100 22381386 L1P3 4156 + 2808 3098 110919 202 0 3 68 0 1 16 chain 40840 chr4 191154276 + 22383809 22384355 MER41A 554 + 0 554 68117 164 0 1 94 9 8 117 0 1 23 0 4 12 9 12 118 chain 13171 chr4 191154276 + 22474776 22474943 MSTA 426 + 256 422 147577 125 1 0 41 chain 23040 chr4 191154276 + 22477073 22477379 AluY 311 + 0 301 115442 21 2 7 104 0 1 149 2 0 9 9 0 10 chain 6298 chr4 191154276 + 22477427 22477541 L1PB1 5432 + 5317 5422 182809 9 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 65595 chr4 191154276 + 22480683 22481764 L1PA7 6471 + 5683 6456 50296 115 309 0 290 0 1 367 chain 28616 chr4 191154276 + 22495845 22496182 MER41A 554 + 217 554 90674 337 chain 30922 chr4 191154276 + 22524675 22525054 MER4A1 472 - 0 472 82643 149 0 93 230 chain 69781 chr4 191154276 + 22565419 22566305 L1PA8A 6298 + 5402 6291 48480 86 0 7 76 1 2 139 8 4 463 1 0 112 chain 87698 chr4 191154276 + 22581532 22582515 L1PA5 6144 + 5154 6142 40489 454 0 9 518 4 0 7 chain 72884 chr4 191154276 + 22599398 22600359 LTR5_Hs 974 - 13 974 47078 58 0 2 72 30 0 46 7 7 68 0 1 47 0 1 196 0 4 226 0 22 211 chain 36663 chr4 191154276 + 22600874 22601347 LTR2B 499 + 9 499 74009 5 1 0 56 3 0 41 0 19 162 0 2 14 0 1 8 1 0 182 chain 36908 chr4 191154276 + 22606614 22607089 LTR2B 499 + 9 499 73647 5 1 0 60 3 0 37 0 19 174 6 7 6 1 0 182 chain 4336 chr4 191154276 + 22636861 22636915 LTR12E 1234 + 784 838 202767 54 chain 5458 chr4 191154276 + 22641907 22642056 MLT1A0 366 + 182 350 190442 14 48 57 56 16 26 15 chain 10213 chr4 191154276 + 22651037 22651159 L1MA7 2200 - 884 1006 159553 122 chain 27899 chr4 191154276 + 22654255 22654608 THE1B 368 - 0 368 93373 97 1 2 100 1 0 114 0 15 40 chain 4522 chr4 191154276 + 22665861 22665913 MER45B 1037 - 228 280 200542 52 chain 18544 chr4 191154276 + 22670893 22671101 L1PA5 6144 - 0 208 131378 208 chain 10391 chr4 191154276 + 22679385 22679575 L1MA5A 2387 - 141 292 158737 14 31 0 15 3 0 36 1 0 26 2 0 44 1 0 3 1 0 13 chain 13002 chr4 191154276 + 22690440 22690612 MSTA 426 + 0 196 148241 109 4 28 59 chain 11802 chr4 191154276 + 22702660 22702861 L1PA8 5853 - 0 197 153032 43 9 8 40 3 2 69 4 3 9 2 1 22 chain 30639 chr4 191154276 + 22702861 22703229 L1PA8 5853 + 5273 5638 83140 291 1 0 46 2 0 28 chain 42828 chr4 191154276 + 22720370 22720854 L1PA3long 6157 - 1 478 65617 139 7 0 338 chain 15619 chr4 191154276 + 22730549 22730738 L1PA8A 6298 + 6088 6278 139526 102 0 1 87 chain 18338 chr4 191154276 + 22739910 22740125 AluSp 311 + 57 273 131961 67 0 1 148 chain 18607 chr4 191154276 + 22756917 22757577 L1MA8 2339 - 130 547 131200 13 6 0 27 159 88 72 1 0 54 1 0 5 188 27 21 5 6 58 4 0 46 chain 56568 chr4 191154276 + 22770498 22771239 L1PA8 5853 - 0 720 54815 52 1 0 41 1 0 19 3 2 39 4 5 5 1 0 11 1 0 69 2 0 10 0 1 35 1 0 180 16 0 108 0 1 142 chain 40143 chr4 191154276 + 22777691 22778126 L1PA3long 6157 + 5722 6157 69121 435 chain 29115 chr4 191154276 + 22778206 22778597 MLT2A1 477 - 80 477 88482 12 0 2 179 0 1 5 0 1 17 0 1 6 18 15 137 0 4 17 chain 43131 chr4 191154276 + 22785497 22786053 MLT2A2 560 + 0 560 65253 201 3 4 118 1 0 227 0 4 6 chain 21000 chr4 191154276 + 22789653 22790027 THE1C 375 + 5 375 123920 52 1 0 4 21 22 89 53 50 128 8 7 18 chain 30323 chr4 191154276 + 22814882 22815388 MLT2A1 477 + 0 477 83857 40 9 11 87 51 1 29 1 5 201 25 19 8 3 0 9 0 21 27 1 0 9 0 4 6 chain 67030 chr4 191154276 + 22827907 22828683 L1PA7 6471 - 5 780 49644 756 1 0 19 chain 12828 chr4 191154276 + 22854600 22854753 MER4A1 472 + 0 153 148942 153 chain 170943 chr4 191154276 + 22854771 22857137 L1PBa 3878 - 1529 3849 21949 206 1 4 12 0 2 511 1 0 150 0 4 14 1 0 82 0 1 22 0 1 85 1 0 264 9 11 75 5 4 4 0 1 335 7 19 10 3 4 4 1 0 286 3 1 25 1 0 49 65 17 46 1 0 10 2 0 5 1 0 6 4 0 15 1 0 4 3 0 12 4 1 8 2 0 10 chain 26781 chr4 191154276 + 22865628 22865965 THE1A 353 + 0 339 97045 110 1 0 84 0 3 142 chain 24062 chr4 191154276 + 22866304 22866608 AluY 311 + 0 288 109967 126 16 0 162 chain 25482 chr4 191154276 + 22867748 22868031 AluYf4 310 + 0 283 102307 283 chain 46650 chr4 191154276 + 22868657 22869216 MLT2A2 560 + 0 557 61496 278 2 0 279 chain 27056 chr4 191154276 + 22873913 22874209 AluYd8 298 + 0 296 96091 296 chain 550265 chr4 191154276 + 22887776 22893921 L1PA4 6152 - 0 6151 1409 2236 1 0 631 1 0 107 0 1 217 0 1 171 0 4 1308 2 0 5 0 2 352 6 7 400 0 1 708 chain 4514 chr4 191154276 + 22907768 22907823 MER5A1 166 - 54 110 200631 27 0 1 28 chain 58743 chr4 191154276 + 22908277 22908920 L1PA3long 6157 + 5513 6157 53555 494 0 1 149 chain 49893 chr4 191154276 + 22909217 22909803 L1PA7 6471 - 78 665 59090 89 0 1 497 chain 46549 chr4 191154276 + 22922153 22922677 L1PA4 6152 - 1 525 61558 524 chain 4753 chr4 191154276 + 22931282 22931338 MIR 256 - 104 160 197875 56 chain 24764 chr4 191154276 + 22936783 22937129 THE1A 353 - 0 353 106091 39 2 6 94 6 5 38 0 1 28 0 4 27 7 6 105 chain 13105 chr4 191154276 + 22949959 22950246 Tigger3a 397 - 0 343 147827 37 83 87 132 16 68 19 chain 94330 chr4 191154276 + 22964832 22965946 L1PA7 6471 - 7 1122 38252 762 0 2 79 1 0 272 chain 35408 chr4 191154276 + 23035211 23035702 L1PA16 3655 - 151 642 75670 12 0 1 186 16 14 47 1 3 40 1 0 188 chain 37260 chr4 191154276 + 23043875 23044323 LTR10F 562 + 0 562 73158 23 1 0 92 1 116 331 chain 5125 chr4 191154276 + 23084815 23084878 MER33 330 + 17 80 193828 63 chain 5113 chr4 191154276 + 23095681 23095739 L1PA6 6164 + 6104 6162 193934 58 chain 16312 chr4 191154276 + 23102950 23103242 THE1C 375 + 0 336 137458 107 20 51 21 0 3 12 45 55 87 chain 121337 chr4 191154276 + 23105389 23106948 THE1B-int 1605 + 1 1590 30584 11 8 6 96 0 3 315 0 25 121 27 28 537 0 2 310 0 1 134 chain 39893 chr4 191154276 + 23156462 23156951 LTR10D 510 - 0 510 69467 248 1 0 153 1 8 10 1 10 12 0 6 63 chain 37049 chr4 191154276 + 23179264 23179827 L1PA11 4918 + 3950 4504 73458 17 1 0 34 8 9 6 1 0 55 0 1 27 0 6 7 12 6 206 9 4 65 2 1 80 2 0 12 3 2 16 chain 46144 chr4 191154276 + 23259652 23260338 L1PA8 5853 + 5162 5853 61900 59 0 1 4 1 0 91 0 1 35 1 0 165 1 3 43 1 0 44 2 0 74 29 23 30 7 6 19 1 0 49 2 11 7 0 4 7 0 1 14 chain 24915 chr4 191154276 + 23306249 23306514 L1PA2 6032 + 5765 6030 105243 265 chain 6208 chr4 191154276 + 23350491 23350719 MLT1B 390 + 70 345 183519 48 134 181 46 chain 40323 chr4 191154276 + 23373743 23374174 SVA_E 1901 + 1470 1901 68848 431 chain 205130 chr4 191154276 + 23417881 23420183 L1PA4 6152 - 25 2334 18846 9 0 6 685 0 1 1608 chain 64582 chr4 191154276 + 23448478 23449238 L1PA6 6164 - 3 763 50762 760 chain 28681 chr4 191154276 + 23465284 23465670 MLT2A1 477 - 92 477 90405 159 1 0 20 0 1 10 0 1 11 0 1 12 13 10 160 chain 450991 chr4 191154276 + 23465670 23471311 HERVL-int 5654 - 0 5654 8739 33 0 3 227 0 1 23 56 16 454 0 3 191 0 2 202 1 0 76 3 0 5 1 4 1248 4 17 496 8 0 930 0 2 152 0 3 105 1 0 4 0 1 207 0 1 373 0 5 91 0 29 404 13 0 10 0 13 323 chain 31774 chr4 191154276 + 23471311 23471753 MLT2A1 477 - 0 473 81207 53 1 0 10 0 37 79 1 0 4 0 1 21 9 10 57 1 2 20 0 1 13 5 2 127 5 0 36 chain 4963 chr4 191154276 + 23507468 23507555 L1PB3 3668 - 104 186 195555 35 3 1 25 1 0 6 2 0 15 chain 42436 chr4 191154276 + 23517820 23518419 L1MA2 4263 - 527 1120 66099 64 8 0 10 1 0 37 0 4 35 7 2 16 7 11 414 chain 179737 chr4 191154276 + 23536851 23539108 L1PA7 6471 + 4262 6461 21015 15 3 4 4 0 1 387 1 5 132 67 0 138 1 0 4 0 3 25 1 2 891 0 1 441 1 0 146 chain 25163 chr4 191154276 + 23539702 23540046 THE1B-int 1605 - 1213 1555 103950 21 0 1 64 1 0 46 0 1 109 3 0 33 18 18 49 chain 20980 chr4 191154276 + 23540096 23540461 THE1B 368 - 0 368 123989 48 1 2 150 3 0 32 5 6 19 60 64 47 chain 12727 chr4 191154276 + 23556251 23556404 L1PA6 6164 - 3 156 149343 153 chain 13916 chr4 191154276 + 23566099 23566273 AluY 311 + 137 301 144867 151 10 0 13 chain 19344 chr4 191154276 + 23592274 23592645 THE1C 375 + 0 375 129097 64 60 80 10 20 0 26 0 2 94 1 2 16 0 2 48 6 5 26 chain 563525 chr4 191154276 + 23616394 23622409 L1HS 6032 + 0 6014 252 103 1 0 5911 chain 48921 chr4 191154276 + 23639803 23640809 L1PB1 5432 - 28 858 59797 13 1 0 21 1 0 15 21 19 4 1 0 5 2 0 19 46 33 39 1 0 11 8 7 26 0 1 23 2 0 9 5 1 12 5 4 8 1 0 20 1 0 11 158 7 76 4 6 13 1 0 4 1 2 219 4 0 47 0 1 98 10 16 40 chain 520050 chr4 191154276 + 23643615 23649393 L1PA3long 6157 - 245 6157 5154 1592 0 1 76 0 1 972 0 4 2357 0 128 38 1 0 588 18 19 136 chain 117089 chr4 191154276 + 23690252 23691846 THE1C-int 1605 + 0 1599 32099 13 3 2 312 0 6 112 10 17 102 1 5 125 28 14 62 0 1 600 7 8 84 0 2 70 35 34 30 chain 29346 chr4 191154276 + 23722480 23722829 L1PA7 6471 + 6119 6467 87313 194 0 1 145 2 0 8 chain 37683 chr4 191154276 + 23724495 23724944 LTR7 482 - 0 482 72572 49 12 14 140 1 32 247 chain 301022 chr4 191154276 + 23725336 23729040 HERVH-int 3825 - 0 3825 13372 487 8 218 746 0 1 297 0 1 359 4 31 83 0 4 222 0 1 152 15 0 421 0 1 20 0 3 13 0 2 6 0 1 57 2 1 28 0 20 14 0 17 15 29 0 19 125 0 5 1 0 10 1 0 39 5 0 309 0 11 101 1 0 110 chain 9592 chr4 191154276 + 23728339 23728458 HERVH-int 3825 - 3245 3358 152486 10 1 0 38 5 0 65 chain 37823 chr4 191154276 + 23729042 23729489 LTR7 482 - 0 480 72377 49 12 14 124 0 31 262 chain 11613 chr4 191154276 + 23734888 23735042 L1PA8A 6298 + 6135 6290 153841 53 3 4 98 chain 40587 chr4 191154276 + 23761857 23762373 THE1B-int 1605 - 5 530 68459 42 2 1 365 0 10 107 chain 149750 chr4 191154276 + 23762381 23764340 HERVL-int 5654 + 3741 5654 24656 358 8 9 639 0 1 46 8 9 132 0 1 34 5 6 287 51 0 20 0 3 126 1 2 21 4 0 219 chain 39311 chr4 191154276 + 23764340 23764885 MLT2A2 560 + 0 558 70305 239 1 0 73 2 4 90 1 13 83 1 0 4 1 0 4 5 7 41 chain 9558 chr4 191154276 + 23774904 23775109 Tigger4a 237 + 30 237 162795 84 4 4 15 59 61 43 chain 130386 chr4 191154276 + 23785521 23786964 L1PA3long 6157 + 4713 6147 27993 123 10 4 17 3 0 1290 chain 24136 chr4 191154276 + 23850506 23850777 AluY 311 + 22 293 109543 271 chain 4997 chr4 191154276 + 23851759 23851839 MADE1 96 + 0 96 195166 30 7 23 43 chain 20794 chr4 191154276 + 23861129 23861381 AluY 311 + 7 260 124622 125 0 1 127 chain 32619 chr4 191154276 + 23973002 23973450 MLT2A1 477 - 0 477 79819 41 17 51 12 3 0 62 0 1 138 4 1 171 chain 54661 chr4 191154276 + 23989423 23990087 L1PA7 6471 - 10 681 55930 143 1 0 99 0 4 346 0 1 43 4 5 6 0 2 22 chain 18547 chr4 191154276 + 24101532 24101743 L1PA5 6144 + 5922 6132 131363 54 1 0 156 chain 51232 chr4 191154276 + 24131173 24131773 L1PA4 6152 + 5546 6143 58171 147 1 0 193 1 0 12 1 0 245 chain 15208 chr4 191154276 + 24163637 24163976 L1PB1 5432 + 5114 5420 140755 24 2 0 8 1 0 11 17 11 52 2 1 16 2 1 42 1 0 21 20 7 19 7 4 15 2 0 24 1 0 7 15 14 13 1 0 16 chain 53923 chr4 191154276 + 24178625 24179237 L1PA4 6152 + 5526 6136 56417 291 0 1 276 3 0 42 chain 60283 chr4 191154276 + 24183619 24184366 L1PA8 5853 - 0 743 52691 44 0 1 48 1 0 16 1 0 45 1 2 4 0 1 11 2 1 72 2 0 44 1 0 43 1 0 411 chain 8913 chr4 191154276 + 24187357 24187450 L1HS 6032 - 98 191 166067 93 chain 7810 chr4 191154276 + 24187450 24187534 L1HS 6032 + 5938 6022 172248 84 chain 2798 chr4 191154276 + 24214029 24214068 MIRb 242 + 67 106 228752 12 0 1 4 1 0 22 chain 13881 chr4 191154276 + 24265175 24265377 Tigger2 2703 + 2272 2480 144978 46 23 26 29 0 3 104 chain 5850 chr4 191154276 + 24273815 24273881 LTR10D 510 + 1 67 186689 66 chain 22973 chr4 191154276 + 24291457 24291822 THE1B 368 - 0 368 115743 123 7 6 7 1 0 18 2 6 11 0 3 21 7 6 35 25 24 108 chain 19183 chr4 191154276 + 24313028 24313270 AluY 311 + 52 290 129576 66 5 0 14 0 1 157 chain 30298 chr4 191154276 + 24324906 24325339 LTR7Y 441 + 0 440 83918 103 9 0 57 68 84 196 chain 253627 chr4 191154276 + 24325340 24328374 HERVH-int 3825 + 0 3120 16049 529 8 2 39 1 0 10 6 5 19 6 56 95 0 1 7 0 2 13 0 3 20 0 1 883 4 31 275 20 30 245 3 0 118 9 7 662 26 28 5 0 3 31 chain 25129 chr4 191154276 + 24329445 24329833 LTR7Y 441 + 0 439 104133 103 90 141 195 chain 15752 chr4 191154276 + 24333406 24333616 L1PA8 5853 - 3 209 139105 90 1 0 19 2 1 51 2 1 6 1 0 38 chain 3125 chr4 191154276 + 24340890 24340934 L1MB2 1706 - 290 334 222442 5 0 1 4 1 0 34 chain 398854 chr4 191154276 + 24345406 24350864 L1PB1 5432 - 28 5413 10142 13 1 0 21 1 0 24 2 0 11 11 8 19 19 8 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 13 9 8 12 1 0 11 7 0 12 1 0 276 1 0 27 0 1 161 6 0 413 2 1 256 8 4 213 35 15 19 3 4 244 0 1 746 7 12 153 0 4 47 2 0 262 24 31 348 0 10 67 0 1 327 63 41 5 2 0 7 1 0 5 0 1 53 10 0 29 18 0 17 5 14 201 1 2 156 6 7 308 11 10 128 0 1 36 1 9 253 1 0 4 5 6 24 0 2 73 9 10 27 chain 39049 chr4 191154276 + 24372400 24372911 L1PA8 5853 - 0 504 70667 93 1 0 19 3 2 43 18 17 66 2 0 49 1 0 21 3 2 192 chain 474016 chr4 191154276 + 24384355 24390593 L1PA7 6471 + 795 6461 7912 102 0 1 154 4 0 7 3 17 136 1 5 214 0 1 4 1 0 474 0 1 198 7 0 410 1 3 110 10 0 450 2 6 124 3 0 399 0 1 588 0 1 560 0 1 220 1 2 178 1 0 4 4 5 109 13 12 62 1 0 140 596 0 130 0 6 86 0 13 407 0 1 324 chain 42690 chr4 191154276 + 24412126 24412645 MLT2A2 560 + 0 523 65790 400 0 4 119 chain 7311 chr4 191154276 + 24464137 24464246 MIR 256 + 50 166 175361 76 7 14 26 chain 40431 chr4 191154276 + 24502597 24503048 LTR7 482 + 0 482 68690 264 0 31 187 chain 295669 chr4 191154276 + 24503050 24506667 HERVH-int 3825 + 0 3825 13665 482 122 0 50 67 0 37 2 1 10 1 0 24 1 151 23 2 1 307 4 7 592 3 31 1370 0 3 31 1 211 254 0 6 234 chain 39992 chr4 191154276 + 24507922 24508373 LTR7 482 + 0 482 69326 247 0 31 204 chain 24026 chr4 191154276 + 24524730 24525021 AluSp 311 + 5 293 110181 181 3 0 107 chain 7719 chr4 191154276 + 24600589 24600758 LTR12D 1347 - 595 906 172803 46 65 207 58 chain 32120 chr4 191154276 + 24602079 24602509 MLT2A1 477 + 6 477 80653 163 4 1 8 1 2 24 0 1 180 4 0 6 6 52 34 chain 13934 chr4 191154276 + 24608166 24608375 MER30 238 - 0 220 144807 39 3 0 61 2 0 15 11 20 72 0 7 6 chain 5458 chr4 191154276 + 24623504 24623565 LTR2 463 - 402 463 190433 61 chain 95206 chr4 191154276 + 24642554 24644180 MER57-int 2662 - 162 1493 38032 6 1 0 52 39 48 61 2 0 4 2 1 418 3 0 193 1 2 274 0 1 4 1 0 59 19 21 80 297 1 19 5 1 86 chain 3298 chr4 191154276 + 24646407 24646448 MSTA 426 + 385 426 219007 41 chain 4305 chr4 191154276 + 24676550 24676602 Charlie4a 502 + 104 156 203160 52 chain 21988 chr4 191154276 + 24720192 24720575 MSTA 426 - 30 426 120275 13 0 1 112 56 60 9 1 0 41 0 6 21 25 28 105 chain 9612 chr4 191154276 + 24737940 24738106 MSTA 426 + 0 196 162524 22 2 3 74 28 57 40 chain 3622 chr4 191154276 + 24743224 24743271 Charlie4a 502 - 409 458 213317 27 0 2 20 chain 21771 chr4 191154276 + 24747456 24747816 THE1B 368 + 0 368 121127 108 4 2 52 8 7 23 41 51 26 4 5 94 chain 23129 chr4 191154276 + 24751139 24751516 MLT2A1 477 - 8 415 115002 31 4 0 18 5 37 43 40 39 124 5 8 107 chain 3755 chr4 191154276 + 24813688 24813770 MLT1D 503 - 306 392 211050 12 26 30 44 chain 4380 chr4 191154276 + 24820123 24820247 MLT1F 544 - 105 206 202195 8 24 0 35 30 31 27 chain 136572 chr4 191154276 + 24861013 24862851 L1PB1 5432 + 3258 5082 26725 447 0 1 8 1 3 11 22 25 797 1 0 78 26 22 128 19 0 6 0 4 294 chain 17233 chr4 191154276 + 24872467 24872682 AluY 311 + 82 300 134972 50 0 1 144 0 2 21 chain 3552 chr4 191154276 + 24905998 24906036 MER66B 489 + 295 333 214519 38 chain 22980 chr4 191154276 + 24911198 24911611 THE1B 368 + 0 368 115716 13 2 0 32 3 4 58 16 17 45 1 0 23 2 0 54 45 5 33 18 16 68 chain 548033 chr4 191154276 + 24940034 24946171 L1PA4 6152 + 0 6141 1703 5 1 0 120 0 5 890 1 0 2296 0 1 1467 0 4 52 22 0 464 0 4 138 0 10 34 0 3 324 0 1 323 chain 13666 chr4 191154276 + 24946216 24946381 L1PA8 5853 + 5689 5853 145722 71 1 0 93 chain 27400 chr4 191154276 + 24948777 24949140 THE1C 375 + 0 375 94971 183 12 25 142 8 7 18 chain 25103 chr4 191154276 + 24950338 24950698 THE1B 368 + 0 366 104273 33 0 5 131 1 0 36 7 11 11 19 17 122 chain 103612 chr4 191154276 + 24962960 24964103 L1PA4 6152 + 4518 5661 35828 1143 chain 34677 chr4 191154276 + 24964125 24964507 L1PA4 6152 + 5761 6143 76658 382 chain 25363 chr4 191154276 + 25036746 25037037 AluYk4 311 - 16 305 102869 163 2 0 126 chain 28993 chr4 191154276 + 25053671 25054024 THE1A 353 + 0 353 89020 353 chain 54223 chr4 191154276 + 25061066 25061732 PABL_A 660 - 0 660 56212 329 0 1 123 12 4 121 0 1 81 chain 24136 chr4 191154276 + 25075939 25076321 THE1D 372 - 0 372 109548 149 5 1 6 0 1 22 1 0 6 13 9 6 0 6 65 3 4 50 16 7 40 chain 37801 chr4 191154276 + 25084919 25085379 LTR2 463 - 0 463 72415 87 1 3 4 0 1 368 chain 3523 chr4 191154276 + 25119576 25119619 MER5A1 166 + 78 121 215021 43 chain 7112 chr4 191154276 + 25124854 25125009 MER20 218 - 5 166 176665 54 10 11 16 1 34 10 29 1 35 chain 146690 chr4 191154276 + 25136446 25138399 L1PA10 4194 + 2188 4146 25054 38 0 4 68 0 5 206 0 2 108 11 4 49 14 12 13 0 4 37 0 1 7 1 0 4 0 1 12 0 1 252 0 12 93 6 10 71 9 3 587 0 3 21 24 11 138 3 4 113 1 0 33 4 1 30 chain 23841 chr4 191154276 + 25196633 25196929 AluSg7 307 - 0 297 111246 169 6 7 121 chain 7854 chr4 191154276 + 25199751 25199842 THE1D 372 + 194 284 171968 31 1 0 59 chain 30042 chr4 191154276 + 25201527 25201902 L1PB1 5432 - 1620 1997 84677 26 1 0 51 1 5 115 1 0 180 chain 119131 chr4 191154276 + 25201908 25203509 L1PB1 5432 + 3845 5416 31366 490 0 1 124 4 5 166 2 0 75 0 2 263 1 2 130 3 0 9 1 2 20 1 0 13 1 0 11 4 0 11 3 1 66 1 0 44 1 0 10 31 18 19 12 9 10 2 0 24 1 0 21 9 8 5 1 0 12 chain 11085 chr4 191154276 + 25213915 25214125 MER30 238 - 0 238 155862 45 0 3 30 1 7 28 5 0 6 6 23 48 26 33 15 chain 40187 chr4 191154276 + 25217779 25218342 THE1D-int 1627 - 1081 1627 69054 5 3 0 117 11 6 33 6 0 6 0 5 243 10 3 86 5 4 38 chain 30941 chr4 191154276 + 25223281 25223656 THE1C 375 - 0 375 82612 25 1 0 163 0 1 186 chain 14314 chr4 191154276 + 25240586 25240774 LTR12C 1709 - 501 936 143514 89 4 51 31 0 200 64 chain 401004 chr4 191154276 + 25242627 25247368 HERV9-int 5642 - 822 5642 10053 49 1 0 2585 0 2 162 0 3 55 0 1 384 0 2 470 4 0 79 74 52 28 3 87 70 1 0 258 0 10 18 0 1 204 14 16 216 0 2 66 chain 17362 chr4 191154276 + 25247707 25248158 LTR12C 1709 - 169 938 134621 42 212 283 96 4 51 31 0 200 66 chain 121796 chr4 191154276 + 25250432 25251871 SVA_B 1603 - 0 1602 30444 6 2 0 121 1 2 463 1 0 14 0 40 256 0 2 71 0 116 448 1 25 20 17 0 18 chain 4878 chr4 191154276 + 25252170 25252228 U2 167 + 0 58 196501 58 chain 4513 chr4 191154276 + 25252540 25252702 L2a 937 - 686 830 200633 8 1 0 28 89 72 36 chain 14772 chr4 191154276 + 25261223 25261448 MER30 238 - 0 238 142024 70 17 18 12 1 0 11 4 17 110 chain 283255 chr4 191154276 + 25288228 25291917 L1PA10 4194 - 89 3796 14451 489 13 15 130 0 1 332 0 1 84 0 2 318 1 0 53 0 4 450 0 4 113 0 1 277 2 4 157 5 6 309 0 4 215 9 11 245 31 23 90 5 7 52 8 9 109 1 0 102 1 0 4 1 0 10 0 4 67 1 0 5 chain 35202 chr4 191154276 + 25292805 25293238 LTR71A 459 + 0 435 75917 52 0 1 147 0 1 234 chain 11481 chr4 191154276 + 25295130 25295391 MLT1B 390 - 18 312 154370 93 86 108 38 1 0 16 7 19 20 chain 10601 chr4 191154276 + 25310466 25310594 MER85 139 + 1 139 157821 89 0 10 39 chain 25787 chr4 191154276 + 25311457 25311871 LTR7B 505 - 15 505 100921 32 18 17 54 0 1 21 1 0 54 1 89 27 35 11 69 0 10 8 0 3 94 chain 4181 chr4 191154276 + 25340446 25340494 L1MB7 1623 - 200 248 204815 48 chain 33176 chr4 191154276 + 25345885 25346244 L1PA3long 6157 + 5795 6157 78945 77 0 3 282 chain 6363 chr4 191154276 + 25355595 25355688 MADE1 96 + 5 96 182290 42 4 2 47 chain 19260 chr4 191154276 + 25360305 25360589 LTR18A 364 + 55 341 129349 58 9 12 15 1 3 83 13 10 105 chain 4660 chr4 191154276 + 25362724 25362779 HERVL18-int 2198 + 595 650 198957 55 chain 2939 chr4 191154276 + 25364335 25364370 MIR 256 - 55 90 226344 35 chain 3835 chr4 191154276 + 25429362 25429407 MIR 256 - 141 186 209843 45 chain 3836 chr4 191154276 + 25455510 25455554 MER57A1 433 + 322 366 209839 44 chain 14435 chr4 191154276 + 25470539 25470769 Tigger4 2445 - 178 403 143093 53 3 1 28 3 2 66 17 15 60 chain 73985 chr4 191154276 + 25479779 25480759 L1PA15 4387 + 3032 3997 46518 135 6 5 23 2 1 534 0 4 79 2 0 11 12 0 66 4 2 41 1 0 64 chain 4423 chr4 191154276 + 25482123 25482329 MLT1C 463 - 200 406 201663 19 82 98 6 1 0 18 41 26 39 chain 26993 chr4 191154276 + 25486660 25487092 MER57A1 433 + 0 433 96306 237 28 9 15 1 24 15 37 34 99 chain 3980 chr4 191154276 + 25504160 25504278 MIRb 242 - 25 151 207676 16 61 69 41 chain 79477 chr4 191154276 + 25517486 25518590 L1MA3 4352 - 151 1408 43836 39 0 1 49 3 0 6 16 79 197 0 2 288 9 13 140 1 0 43 0 7 106 0 90 61 10 0 136 chain 2775 chr4 191154276 + 25551446 25551476 L1ME3B 1119 + 818 848 229096 30 chain 4213 chr4 191154276 + 25580596 25580645 MER2 342 - 127 176 204383 49 chain 72764 chr4 191154276 + 25598454 25599450 MER11A 1151 - 0 1146 47142 234 1 36 19 3 0 56 2 1 52 0 19 44 1 0 8 6 9 114 1 0 21 3 5 89 7 8 47 0 1 94 8 5 134 0 98 52 chain 15090 chr4 191154276 + 25601899 25602076 L1PA5 6144 + 5966 6141 141058 6 2 0 169 chain 51025 chr4 191154276 + 25614927 25615590 LTR12_ 688 - 0 688 58291 412 0 1 96 33 16 44 1 42 77 chain 24331 chr4 191154276 + 25616733 25617040 AluSp 311 + 0 303 108478 125 7 3 175 chain 26966 chr4 191154276 + 25619113 25619639 LTR8 732 + 31 569 96380 11 6 0 40 1 0 28 30 33 13 1 7 70 0 1 105 15 16 94 80 88 32 chain 17016 chr4 191154276 + 25619656 25619861 AluYc 301 + 57 278 135548 63 0 2 84 0 14 58 chain 18643 chr4 191154276 + 25681615 25681869 AluSc8 310 + 8 261 131102 38 0 2 5 18 12 67 0 3 126 chain 4768 chr4 191154276 + 25689905 25689998 MSTC 436 + 0 96 197714 32 26 29 35 chain 43031 chr4 191154276 + 25699311 25699820 MER9a1 513 - 0 513 65382 29 0 1 126 0 3 354 chain 61524 chr4 191154276 + 25700836 25702089 MER4E 760 + 12 753 52106 33 1 0 51 0 2 71 0 1 168 514 0 415 chain 3531 chr4 191154276 + 25701204 25701244 MER4E 760 - 379 419 214854 40 chain 3020 chr4 191154276 + 25713752 25713784 L1MB5 1630 - 1059 1091 224602 32 chain 4346 chr4 191154276 + 25734712 25734841 L1ME1 1623 - 1227 1344 202638 44 53 42 12 2 1 18 chain 13589 chr4 191154276 + 25739285 25739477 MER2 342 - 22 222 146013 19 16 24 157 chain 29863 chr4 191154276 + 25745015 25745453 MER4A1 472 - 14 472 85234 44 39 40 126 2 23 120 2 0 105 chain 8947 chr4 191154276 + 25748277 25748496 MSTA 426 + 209 426 165884 24 91 89 104 chain 5454 chr4 191154276 + 25828700 25828768 MER96B 391 - 217 285 190485 68 chain 3260 chr4 191154276 + 25859170 25859267 MIRb 242 - 72 168 219776 17 30 41 7 12 0 31 chain 24100 chr4 191154276 + 25910600 25910952 THE1B 368 - 0 368 109743 112 48 58 29 1 0 65 0 7 97 chain 30063 chr4 191154276 + 25920511 25920825 AluYb8 318 - 4 318 84622 314 chain 4087 chr4 191154276 + 25954912 25954960 MER5A 189 + 99 147 206109 48 chain 43030 chr4 191154276 + 25958438 25958904 L1PA3long 6157 + 5690 6156 65385 466 chain 16781 chr4 191154276 + 25964037 25964307 MER1B 344 - 0 307 136167 59 27 60 118 15 19 51 chain 92657 chr4 191154276 + 25977428 25978496 MER11C 1089 + 2 1074 38768 739 0 1 32 0 1 289 0 2 8 chain 3438 chr4 191154276 + 25996351 25996387 MLT1B 390 + 234 270 216436 36 chain 12158 chr4 191154276 + 26009098 26009234 L1PA5 6144 - 12 148 151579 136 chain 113866 chr4 191154276 + 26064733 26066166 LTR12C 1709 - 1 1709 33128 361 1 9 71 2 0 39 0 4 106 3 1 6 1 0 84 0 278 245 0 1 65 0 1 25 22 0 20 0 10 13 1 2 270 2 1 96 chain 22507 chr4 191154276 + 26071748 26072037 AluSp 311 - 8 301 118001 182 0 1 9 8 7 55 3 7 32 chain 14406 chr4 191154276 + 26093130 26093336 L1PB2 3958 - 120 322 143192 63 1 0 22 9 7 64 2 1 45 chain 34128 chr4 191154276 + 26125698 26126355 L1PB1 5432 - 12 603 77440 16 1 0 8 76 69 18 9 0 8 1 0 5 3 0 16 1 0 44 1 0 14 7 6 46 3 1 11 4 0 12 2 1 7 1 0 24 49 13 262 0 2 8 chain 5098 chr4 191154276 + 26126775 26126834 MLT1J 494 - 336 395 194104 59 chain 406253 chr4 191154276 + 26167340 26171841 L1PA3long 6157 - 0 6151 9902 259 1 0 770 1 3 226 0 1 901 0 1646 786 0 2 1557 chain 8025 chr4 191154276 + 26226049 26226156 MER11A 1151 - 0 104 170910 42 1 0 24 1 0 27 1 0 11 chain 21978 chr4 191154276 + 26244572 26244859 AluSp 311 + 6 289 120326 126 2 1 136 4 1 19 chain 3376 chr4 191154276 + 26251291 26251336 MADE1 96 - 53 95 217555 33 3 0 9 chain 79844 chr4 191154276 + 26316828 26317869 MER11A 1151 - 5 1151 43663 18 14 0 36 8 7 226 13 20 280 1 0 113 5 6 51 0 1 60 0 2 21 0 11 136 1 100 58 chain 220261 chr4 191154276 + 26446913 26451191 L1PB3 3668 + 4 3614 17866 15 5 3 26 107 89 91 340 4 112 0 1 134 3 6 15 0 5 75 10 14 19 0 4 191 0 5 68 4 0 6 1 5 35 7 14 32 0 1 15 19 25 74 0 1 4 2 0 128 4 0 222 32 25 128 13 24 287 348 0 43 10 3 153 0 1 4 17 7 29 4 6 29 2 0 16 16 0 82 0 1 124 0 1 36 4 4 13 4 25 65 0 5 113 7 6 32 6 5 50 0 46 84 12 8 90 18 24 50 1 0 17 22 30 73 0 1 6 8 1 101 9 8 50 0 11 30 59 15 14 0 5 44 24 14 18 6 4 24 3 1 37 11 15 14 7 4 15 chain 20574 chr4 191154276 + 26452301 26452588 L1PA8 5853 + 5566 5847 125381 41 5 3 67 3 2 11 1 0 50 2 1 19 1 0 87 chain 2657 chr4 191154276 + 26470293 26470346 MER53 195 + 141 195 230920 19 12 13 22 chain 8742 chr4 191154276 + 26470757 26470878 MLT1B 390 - 42 163 166962 86 6 5 4 0 1 25 chain 26619 chr4 191154276 + 26479323 26479623 AluYk4 311 - 11 311 97601 300 chain 34197 chr4 191154276 + 26503277 26503720 MLT2A1 477 - 0 477 77354 49 4 36 209 0 1 13 5 2 130 1 2 25 0 3 7 chain 32094 chr4 191154276 + 26542504 26542914 L1PA8 5853 + 5447 5853 80703 68 0 1 48 1 0 43 3 1 71 1 0 13 0 1 47 2 1 21 1 0 91 chain 141890 chr4 191154276 + 26546875 26548677 L1PA10 4194 - 33 1851 25842 11 1 0 34 3 0 39 2 0 289 0 3 49 0 2 423 8 21 538 1 0 69 3 7 46 0 1 286 chain 531810 chr4 191154276 + 26552187 26558599 L1PA7 6471 - 10 6468 3985 144 9 4 689 0 3 1208 6 7 250 2 3 41 0 22 128 0 23 100 3 4 759 0 1 442 8 9 103 0 2 624 0 1 94 1 0 963 6 0 262 5 6 161 1 2 403 chain 23522 chr4 191154276 + 26566611 26566960 THE1B 368 + 16 368 113006 153 1 0 21 19 24 16 1 0 9 5 4 27 0 1 35 1 0 4 1 2 56 chain 18228 chr4 191154276 + 26574248 26574644 L1PB1 5432 - 5 368 132261 5 2 0 18 1 0 13 1 0 21 1 0 18 31 28 15 25 13 16 1 0 44 1 0 15 2 1 53 2 0 8 2 0 3 2 0 10 1 0 7 2 1 24 13 11 39 chain 3634 chr4 191154276 + 26575827 26575876 MSTB1 431 - 19 63 213071 36 5 0 8 chain 5287 chr4 191154276 + 26579185 26579310 LTR16C 481 - 6 129 192142 24 51 49 50 chain 22879 chr4 191154276 + 26581128 26581436 L1PA8 5853 - 0 302 116189 90 1 0 19 1 0 65 2 1 69 2 0 45 1 0 13 chain 27751 chr4 191154276 + 26582846 26583228 L1PA8 5853 - 3 380 93864 89 2 1 19 2 1 52 2 1 8 1 0 72 2 0 43 1 0 12 2 7 66 3 0 6 chain 8074 chr4 191154276 + 26592230 26592410 L1MC2 1988 - 13 189 170620 29 39 36 38 5 8 16 5 1 48 chain 1064 chr4 191154276 + 26592997 26593099 LTR15 485 + 0 103 74934 59 0 1 43 chain 263396 chr4 191154276 + 26593115 26596050 L1PA4 6152 + 3144 6079 15513 21 1 0 629 0 1 194 1 0 97 0 1 1992 chain 3931 chr4 191154276 + 26596069 26596446 LTR15 485 + 103 485 74934 47 0 2 208 0 3 93 0 1 24 1 0 4 chain 22965 chr4 191154276 + 26606210 26606496 AluY 311 + 0 273 115780 37 5 0 89 5 0 108 3 0 39 chain 76912 chr4 191154276 + 26606677 26607534 L1PA3long 6157 - 0 856 45020 767 1 0 89 chain 17572 chr4 191154276 + 26610471 26610679 L1PA4 6152 + 5661 5997 134073 70 0 125 7 0 3 131 chain 14188 chr4 191154276 + 26610686 26610840 L1PA4 6152 + 5997 6151 143924 154 chain 26821 chr4 191154276 + 26612405 26612816 L1PA15 4387 - 60 466 96907 11 2 0 46 6 3 50 1 0 16 4 0 16 1 0 55 1 0 26 2 1 71 15 17 80 0 6 8 chain 15024 chr4 191154276 + 26614936 26615124 MER107 203 - 0 195 141257 15 1 2 7 0 6 165 chain 15139 chr4 191154276 + 26623446 26623616 L1PA4 6152 + 5722 5892 140952 170 chain 22739 chr4 191154276 + 26623617 26623871 L1PA4 6152 + 5892 6146 116873 254 chain 141961 chr4 191154276 + 26628513 26630067 L1PA3long 6157 - 0 1558 25831 849 0 4 705 chain 48760 chr4 191154276 + 26630067 26630592 L1PA3long 6157 + 4081 4606 59719 525 chain 510122 chr4 191154276 + 26642058 26648558 L1PA6 6164 + 0 6161 6153 371 25 32 56 5 6 44 2 1 57 1 0 18 1 0 861 1 0 157 0 1 818 0 1 123 0 3 416 0 1 223 0 1 261 0 3 271 0 1 228 0 1 228 0 1 341 82 0 787 0 4 18 313 0 221 0 3 239 0 14 181 3 15 79 2 1 32 0 9 26 2 0 7 chain 532274 chr4 191154276 + 26651344 26657642 L1PA4 6152 - 9 6152 3931 1142 2 0 643 0 4 845 1 0 33 152 0 98 1 0 764 5 0 1159 2 0 239 0 2 129 13 14 141 0 1 929 chain 169515 chr4 191154276 + 26658715 26660763 L1PA7 6471 - 7 2059 22113 754 1 2 83 7 6 204 6 5 492 0 2 195 7 8 189 0 2 110 chain 24758 chr4 191154276 + 26666265 26666594 LTR17 781 - 455 781 106121 71 8 7 69 1 0 23 1 0 156 chain 94531 chr4 191154276 + 26679592 26681509 THE1C-int 1605 + 0 1599 38202 12 4 3 17 11 13 65 0 54 216 633 0 30 11 7 27 10 17 287 1 0 3 3 0 254 0 1 237 1 261 95 chain 524448 chr4 191154276 + 26695543 26701646 L1PA5 6144 + 3 6141 4728 344 0 1 271 2 5 541 24 59 5 0 1 218 2 0 230 9 10 773 0 1 709 1 2 106 0 1 140 9 4 318 0 1 1544 0 1 847 4 0 6 chain 26219 chr4 191154276 + 26705295 26705610 AluYk4 311 + 2 309 99128 124 8 0 183 chain 113575 chr4 191154276 + 26711663 26712934 L1PA4 6152 - 9 1288 33208 626 0 2 109 0 1 110 0 1 228 0 4 198 chain 68620 chr4 191154276 + 26737429 26738173 L1PA2 6032 + 5280 6026 48970 340 0 2 404 chain 29193 chr4 191154276 + 26772678 26773234 L1MB1 2102 + 1467 2035 88080 96 58 56 51 4 5 32 0 1 30 1 0 9 1 0 7 1 0 23 14 18 56 15 29 59 2 0 6 6 9 53 4 2 6 2 0 20 chain 57724 chr4 191154276 + 26774601 26775511 L1PA11 4918 - 289 1159 54121 16 26 19 9 1 0 5 8 2 11 2 0 13 61 48 16 4 3 13 2 0 67 2 0 12 1 0 67 0 10 8 21 6 300 0 1 126 1 0 118 chain 3204 chr4 191154276 + 26790899 26791000 MLT1J2 417 + 71 172 220884 21 46 47 4 1 0 29 chain 151166 chr4 191154276 + 26801630 26803330 L1PA4 6152 - 1 1701 24453 146 4 5 616 1 0 933 chain 35680 chr4 191154276 + 26812530 26812976 L1PA8 5853 + 5247 5689 75295 317 1 0 44 2 0 69 3 2 10 chain 42234 chr4 191154276 + 26813149 26813680 MER41A 554 - 14 552 66356 62 7 12 35 0 1 169 0 1 258 chain 27471 chr4 191154276 + 26824623 26824975 THE1B 368 - 0 367 94741 60 0 1 107 2 0 32 1 0 46 0 2 61 1 16 42 chain 27599 chr4 191154276 + 26892173 26892465 AluYa5 310 + 9 301 94348 292 chain 18379 chr4 191154276 + 26905578 26905782 L1PA3long 6157 - 8 213 131849 139 0 1 65 chain 444792 chr4 191154276 + 26924566 26929315 L1HS 6032 + 582 6032 8910 458 0 700 2186 0 1 2105 chain 515592 chr4 191154276 + 26971876 26978001 L1PA6 6164 - 4 6164 5608 99 1 4 348 0 2 1048 0 5 5 1 0 709 0 1 749 0 1 17 6 8 391 0 1 364 5 9 65 0 1 198 0 1 159 4 0 240 0 1 486 1 0 346 0 9 229 0 3 94 1 0 48 0 2 30 0 1 149 6 7 92 0 2 148 1 3 85 chain 6734 chr4 191154276 + 27020218 27020301 MLT1E3 631 - 547 631 179444 51 0 1 32 chain 81759 chr4 191154276 + 27035566 27036916 L1PB1 5432 - 9 1326 42866 8 1 0 11 1 0 12 1 0 22 5 4 15 11 9 10 1 0 5 2 0 16 25 15 16 3 2 9 16 0 29 8 7 12 3 2 21 0 1 26 108 110 45 0 2 204 1 0 101 0 3 74 4 0 243 0 1 9 0 3 14 2 0 6 1 3 141 7 4 19 3 4 79 chain 24546 chr4 191154276 + 27059852 27060124 L1PA4 6152 - 9 300 107276 104 0 19 168 chain 556892 chr4 191154276 + 27071855 27077886 L1PA2 6032 - 1 6032 618 852 1 0 4702 0 1 476 chain 43264 chr4 191154276 + 27088649 27089194 MER41A 554 - 8 554 65095 282 4 5 259 chain 19251 chr4 191154276 + 27095068 27095301 L1PA8A 6298 + 6057 6290 129374 233 chain 228099 chr4 191154276 + 27107170 27109829 L1PA6 6164 + 3457 6148 17410 245 0 1 89 0 1 81 1 0 17 0 1 423 0 1 197 0 1 135 1 0 29 0 1 436 0 1 217 10 11 104 0 8 479 0 2 77 0 16 118 chain 29031 chr4 191154276 + 27112541 27112941 MER48 407 - 7 407 88846 227 0 20 16 21 1 91 9 8 6 0 1 30 chain 19463 chr4 191154276 + 27119609 27119827 L1PA4 6152 + 5637 5858 128776 184 0 3 34 chain 41143 chr4 191154276 + 27140253 27140782 MER1A 529 + 0 529 67725 18 1 0 438 8 9 64 chain 26950 chr4 191154276 + 27175910 27176248 THE1C 375 + 0 335 96453 151 1 0 35 2 0 149 chain 308810 chr4 191154276 + 27230509 27233986 L1PA4 6152 - 0 3495 13055 6 0 5 811 7 8 778 0 3 860 0 1 358 0 8 606 6 6 45 chain 142811 chr4 191154276 + 27242128 27243740 L1PA3long 6157 + 4540 6157 25684 472 5 6 1121 2 6 12 chain 36225 chr4 191154276 + 27257959 27258437 L1PA7 6471 - 18 474 74592 48 32 9 75 0 1 189 1 0 86 0 1 47 chain 2581 chr4 191154276 + 27288448 27288500 MER58A 224 - 155 189 231918 24 18 0 10 chain 20798 chr4 191154276 + 27303501 27303872 THE1C 375 - 0 375 124609 32 39 46 80 46 44 48 3 0 93 0 2 30 chain 40257 chr4 191154276 + 27319028 27319586 L1PA8 5853 - 0 551 68934 93 1 0 17 10 9 46 1 0 9 2 1 70 2 0 32 17 16 258 chain 558537 chr4 191154276 + 27377309 27383341 L1PA2 6032 - 0 6032 452 14 1 0 2201 0 1 3816 chain 185176 chr4 191154276 + 27401900 27405230 L1PB1 5432 + 2801 5423 20482 23 0 2 13 6 3 88 0 4 56 4 3 14 2 0 173 1 0 38 9 0 146 2 1 4 0 1 195 326 0 18 6 5 57 0 1 73 41 5 231 0 1 246 0 1 158 3 1 264 3 0 165 33 37 10 0 1 5 1 0 244 331 26 24 8 6 14 5 1 9 12 10 42 2 1 15 1 0 44 1 0 15 1 0 4 23 12 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 20979 chr4 191154276 + 27416070 27416318 L1PA5 6144 - 0 247 123993 142 1 0 105 chain 30240 chr4 191154276 + 27417964 27418334 THE1B-int 1605 + 0 370 84087 370 chain 48882 chr4 191154276 + 27423095 27423735 L1PA8 5853 - 0 635 59819 93 1 0 19 2 1 52 12 10 70 2 0 44 1 0 48 13 15 283 chain 77512 chr4 191154276 + 27435170 27436030 L1PA3long 6157 - 0 865 44732 570 0 1 278 0 1 4 0 3 8 chain 40348 chr4 191154276 + 27444320 27445199 MLT2A2 560 + 2 560 68812 178 1 0 46 332 0 65 6 7 101 3 14 147 chain 2492 chr4 191154276 + 27449838 27449864 LTR78 714 - 469 495 233203 26 chain 13401 chr4 191154276 + 27454812 27455064 L1PB1 5432 - 12 241 146710 16 1 0 13 1 0 21 1 0 24 2 0 14 31 19 17 3 0 16 1 0 43 1 0 16 2 1 29 chain 44013 chr4 191154276 + 27456435 27456926 L1PA3long 6157 - 0 491 64189 491 chain 3832 chr4 191154276 + 27487107 27487154 MADE1 96 + 49 96 209890 47 chain 217735 chr4 191154276 + 27500000 27503107 L1PA8A 6298 + 2738 6290 18019 227 0 4 101 0 1 342 0 4 61 1 2 390 1 2 96 0 1 179 0 3 365 5 6 442 0 728 20 6 33 17 8 0 69 0 1 39 7 9 84 320 0 170 2 0 51 7 8 97 chain 139694 chr4 191154276 + 27513293 27514886 L1PA4 6152 + 4535 6134 26191 129 0 1 453 0 1 164 0 4 847 chain 3235 chr4 191154276 + 27537940 27537990 L1PB3 3668 - 106 154 220321 33 3 1 14 chain 32375 chr4 191154276 + 27562912 27563324 L1PA8 5853 + 5447 5853 80228 56 0 3 58 1 0 44 2 0 74 1 0 15 3 0 43 2 1 19 1 0 93 chain 65443 chr4 191154276 + 27583639 27584416 L1PA6 6164 + 5385 6159 50362 152 2 3 9 4 0 610 chain 6794 chr4 191154276 + 27625572 27625849 MLT1C 463 + 125 406 178997 11 1 0 34 2 39 13 161 129 55 chain 25333 chr4 191154276 + 27640525 27640828 L1PA4 6152 - 13 309 103053 140 8 1 155 chain 23447 chr4 191154276 + 27664011 27664426 LTR14A 344 + 0 344 113396 45 3 0 4 33 0 4 8 0 58 31 0 49 0 1 83 0 1 26 0 1 21 14 15 36 chain 7016 chr4 191154276 + 27670580 27670673 MER2 342 - 90 184 177350 82 0 1 11 chain 5218 chr4 191154276 + 27697213 27697278 L1PA6 6164 - 4 69 192842 65 chain 32998 chr4 191154276 + 27699953 27700338 L1PA4 6152 - 1 387 79216 159 0 3 5 4 2 217 chain 3562 chr4 191154276 + 27702057 27702096 MLT2B4 540 - 501 540 214298 39 chain 27929 chr4 191154276 + 27706102 27706410 AluYk11 308 - 1 308 93242 183 1 0 124 chain 14119 chr4 191154276 + 27721475 27721737 L1PA11 4918 + 4239 4494 144142 78 9 8 36 37 36 10 2 0 67 2 0 15 1 0 5 chain 3594 chr4 191154276 + 27722922 27722974 LTR12B 2670 - 2618 2668 213758 26 2 0 24 chain 26061 chr4 191154276 + 27740113 27740478 THE1B 368 - 0 368 99789 200 1 0 28 9 10 88 2 7 20 2 0 15 chain 28670 chr4 191154276 + 27755462 27755765 AluYa5 310 - 7 310 90452 303 chain 11210 chr4 191154276 + 27768728 27768954 L1PB3 3668 + 3358 3563 155384 20 1 0 13 1 0 59 8 9 19 21 5 18 9 7 20 3 1 34 chain 20279 chr4 191154276 + 27774069 27774298 L1PA4 6152 + 5909 6137 126281 87 1 0 141 chain 35873 chr4 191154276 + 27814960 27815395 LTR19B 566 + 0 438 75038 368 6 9 61 chain 23722 chr4 191154276 + 27815401 27815682 AluY 311 + 6 286 111921 119 1 0 161 chain 35583 chr4 191154276 + 27844828 27845290 L1PA7 6471 - 4 465 75431 6 4 0 135 6 5 262 0 4 49 chain 25207 chr4 191154276 + 27869073 27869374 AluSx4 309 + 0 301 103704 301 chain 3430 chr4 191154276 + 27882822 27882862 MSTA-int 1630 - 1561 1601 216574 40 chain 3030 chr4 191154276 + 27898439 27898473 MLT-int 841 + 569 603 224379 34 chain 3924 chr4 191154276 + 27905964 27906015 LTR32 486 - 435 486 208502 51 chain 48047 chr4 191154276 + 27916043 27916687 L1PA8 5853 + 5217 5853 60446 277 3 1 69 1 0 46 2 0 68 2 1 50 13 12 19 2 1 92 chain 213641 chr4 191154276 + 27976925 27981019 HERVH-int 3825 + 0 3825 18248 272 0 900 14 4 5 37 15 0 89 0 4 9 0 19 153 0 1 96 2 0 621 0 1 567 0 3 327 1392 211 496 chain 118986 chr4 191154276 + 27979132 27980519 LTR12C 1709 - 0 1707 31420 481 0 4 107 9 325 790 chain 14860 chr4 191154276 + 27997351 27997595 L1PA13 3608 + 3248 3480 141757 26 2 0 61 1 0 27 1 0 29 1 0 4 3 1 47 9 5 18 1 0 14 chain 30256 chr4 191154276 + 28013442 28013855 MLT2A1 477 - 0 477 84039 32 16 62 49 0 20 37 1 0 72 0 1 24 0 1 9 4 1 169 chain 4342 chr4 191154276 + 28019694 28019890 L1MA10 1535 - 45 230 202697 19 38 23 32 63 64 16 7 10 21 chain 122700 chr4 191154276 + 28022100 28023464 L1PA3long 6157 + 4775 6138 30164 1129 2 1 233 chain 5280 chr4 191154276 + 28030422 28030567 Charlie1 1172 - 211 359 192212 35 65 68 45 chain 5870 chr4 191154276 + 28037368 28037439 MSTA-int 1630 - 9 80 186479 71 chain 43644 chr4 191154276 + 28069455 28069978 L1PA5 6144 - 4 540 64637 14 1 0 111 19 34 96 1 0 281 chain 412101 chr4 191154276 + 28078588 28083969 L1PA6 6164 + 0 6162 9744 371 25 32 105 2 1 233 18 19 289 331 0 188 0 1 184 12 17 574 0 1088 74 0 1 45 2 6 175 4 1 160 0 1 387 0 1 349 0 2 57 0 4 343 1 2 978 0 1 469 1 0 4 chain 112197 chr4 191154276 + 28114219 28115657 LTR12C 1709 + 0 1709 33613 23 0 8 8 9 0 96 0 1 277 0 1 4 1 0 43 0 3 5 1 0 94 12 14 73 0 278 184 1 0 5 3 1 99 18 11 393 5 4 84 chain 10373 chr4 191154276 + 28118539 28118675 LTR12C 1709 - 800 935 158817 72 1 0 63 chain 25407 chr4 191154276 + 28161266 28161550 L1PA3long 6157 + 5874 6157 102652 248 1 0 35 chain 37089 chr4 191154276 + 28180134 28180561 L1PA6 6164 + 5720 6147 73398 427 chain 12436 chr4 191154276 + 28198336 28198475 L1HS 6032 + 5893 6032 150509 139 chain 20665 chr4 191154276 + 28205424 28205800 THE1B 368 - 0 368 125086 75 1 0 101 32 25 32 53 54 33 0 1 34 2 0 13 chain 108347 chr4 191154276 + 28205800 28207304 THE1B-int 1605 - 0 1560 34603 186 15 16 40 1 2 225 3 0 4 1 0 120 0 1 135 1 2 45 5 22 15 26 32 79 0 1 198 23 50 110 0 1 58 0 1 150 1 4 63 chain 3768 chr4 191154276 + 28252700 28252784 MLT1E2 623 + 530 615 210849 26 27 28 31 chain 47172 chr4 191154276 + 28273253 28273884 L1PA8 5853 + 5230 5853 61069 218 6 7 18 3 1 88 1 0 46 2 0 68 4 3 10 1 0 51 2 1 19 1 0 93 chain 81215 chr4 191154276 + 28275696 28276775 L1P3 4156 - 17 1097 43077 24 2 1 7 2 0 11 0 1 563 2 1 37 7 8 49 0 5 228 3 1 144 chain 15793 chr4 191154276 + 28276896 28277238 L1PB1 5432 + 5114 5420 138974 21 1 0 12 1 0 10 4 0 12 2 0 19 0 1 8 5 0 23 2 1 16 1 0 36 38 24 30 3 1 4 1 0 14 2 0 24 1 0 21 1 0 9 5 4 16 chain 33361 chr4 191154276 + 28283009 28283452 LTR2 463 + 7 463 78634 54 0 3 43 20 23 24 3 2 70 0 5 137 0 1 64 0 2 28 chain 38919 chr4 191154276 + 28287713 28288174 LTR2 463 + 0 462 70841 368 0 1 93 chain 12770 chr4 191154276 + 28288736 28289073 L1PB1 5432 + 5114 5422 149176 24 1 0 6 1 0 12 31 25 36 26 29 6 5 0 29 38 27 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 15784 chr4 191154276 + 28300957 28301154 L1P3 4156 - 91 288 139003 197 chain 10789 chr4 191154276 + 28301154 28301299 L1PA10 4194 + 4009 4150 156162 67 1 0 40 3 0 34 chain 20965 chr4 191154276 + 28302771 28303003 L1PA3long 6157 + 5925 6157 124053 232 chain 44986 chr4 191154276 + 28304579 28305178 LTR12 884 + 1 783 63071 24 1 0 288 0 49 15 2 0 197 2 106 52 1 34 17 chain 398194 chr4 191154276 + 28305204 28310039 HERV9-int 5642 + 4 4812 10164 591 11 10 111 6 0 72 17 16 60 6 0 221 26 25 134 0 1 545 0 3 671 1 0 34 4 5 401 8 1 523 2 0 354 1 0 1016 7 1 13 chain 1559 chr4 191154276 + 28311580 28311622 LTR12 884 + 288 330 181580 42 chain 15757 chr4 191154276 + 28311622 28311805 LTR12 884 + 91 274 139087 183 chain 2734 chr4 191154276 + 28311965 28311995 LTR12 884 + 650 680 229684 30 chain 26336 chr4 191154276 + 28354369 28354662 L1PA3long 6157 - 0 293 98672 293 chain 467466 chr4 191154276 + 28408485 28415035 L1PA5 6144 + 59 6140 8131 229 3 4 741 1 0 370 10 20 577 1089 590 244 1 2 328 2 1 37 1 0 71 3 10 382 0 1 430 0 6 178 0 2 93 0 6 913 1 0 846 chain 81914 chr4 191154276 + 28410442 28411505 MER11B 1079 - 26 1079 42799 25 16 17 163 0 1 32 3 0 45 8 2 34 0 1 61 1 0 97 11 10 4 0 1 296 3 0 264 chain 52017 chr4 191154276 + 28455459 28456307 L1PB1 5432 - 19 842 57616 9 1 0 13 1 0 21 1 0 24 2 0 11 49 34 20 1 0 59 1 0 45 10 8 11 22 20 22 15 13 284 6 14 98 1 0 77 5 1 39 chain 19249 chr4 191154276 + 28468478 28468713 AluY 311 + 18 252 129376 115 1 0 119 chain 13615 chr4 191154276 + 28476790 28477019 AluJr4 308 + 48 278 145916 57 54 55 118 chain 225235 chr4 191154276 + 28494043 28496967 L1PA8 5853 + 2880 5853 17578 10 1 0 43 23 26 255 0 1 268 8 13 73 1 2 520 0 1 242 0 1 249 0 43 95 0 1 7 0 1 274 0 1 4 3 1 83 6 1 145 1 5 319 1 0 25 0 1 19 8 6 62 17 15 50 2 1 17 1 0 70 0 1 22 chain 142452 chr4 191154276 + 28515819 28517451 SVA_D 2077 - 0 2077 25733 146 1 0 204 0 3 272 13 64 31 0 1 15 0 1 28 5 396 129 1 2 420 2 0 365 chain 20704 chr4 191154276 + 28519669 28519933 AluSp 311 + 38 302 124951 68 1 2 31 3 2 161 chain 94266 chr4 191154276 + 28526771 28527803 L1PA3long 6157 + 5125 6157 38273 1032 chain 26402 chr4 191154276 + 28531170 28531501 L1PA7 6471 + 6136 6469 98403 169 3 4 84 0 1 75 chain 6114 chr4 191154276 + 28561677 28561746 L1PA8 5853 + 5761 5830 184315 69 chain 122500 chr4 191154276 + 28582982 28584549 THE1A-int 1579 + 0 1579 30219 137 0 1 154 2 15 116 1 0 9 1 2 69 4 3 217 1 10 327 30 20 499 chain 47281 chr4 191154276 + 28587104 28587678 LTR10C 591 + 0 591 60979 235 0 23 67 0 1 4 1 0 180 7 1 80 chain 22087 chr4 191154276 + 28593554 28593827 AluY 311 + 16 288 119850 102 2 0 46 0 1 123 chain 14680 chr4 191154276 + 28606996 28607211 L1PA7 6471 + 6256 6464 142328 56 10 11 81 9 4 51 3 0 5 chain 150212 chr4 191154276 + 28735262 28737097 L1PA7 6471 - 4 1864 24583 6 4 0 143 1 9 353 2 0 252 1 4 70 3 6 21 0 4 318 4 7 75 0 4 79 0 2 439 0 4 64 chain 23554 chr4 191154276 + 28746332 28746615 L1PA7 6471 - 2 283 112824 13 1 0 175 1 0 93 chain 18178 chr4 191154276 + 28748401 28748630 AluY 311 + 18 255 132386 34 1 0 56 0 1 22 0 2 106 0 6 10 chain 2732 chr4 191154276 + 28773348 28773431 MER58A 224 + 50 157 229720 27 38 62 18 chain 21519 chr4 191154276 + 28790275 28790581 MER50 708 - 112 402 122074 230 28 12 48 chain 11118 chr4 191154276 + 28791248 28791385 MER50 708 + 464 600 155744 5 1 0 131 chain 12688 chr4 191154276 + 28830133 28830364 LTR12C 1709 + 965 1203 149494 103 3 50 24 5 6 11 41 0 44 chain 22031 chr4 191154276 + 28841714 28841988 AluSc 308 + 20 289 120101 103 2 0 3 2 0 121 1 0 42 chain 526049 chr4 191154276 + 28853151 28859290 L1PA5 6144 - 0 6144 4583 657 1 28 1106 0 4 1069 1 2 113 2 1 56 1 0 115 0 1 457 1 0 62 3 2 165 3 0 1136 9 0 43 1 3 995 14 0 129 chain 12872 chr4 191154276 + 28862226 28862388 Tigger2 2703 - 508 670 148745 162 chain 20588 chr4 191154276 + 28895485 28895711 AluY 311 + 81 307 125338 226 chain 2994 chr4 191154276 + 28919635 28919673 MSTA 426 + 385 426 225126 33 0 3 5 chain 3181 chr4 191154276 + 28928967 28929013 L1PB1 5432 - 285 329 221284 9 1 0 24 1 0 11 chain 11265 chr4 191154276 + 28929057 28929290 L1PB1 5432 + 5187 5391 155171 33 2 1 16 1 0 44 1 0 15 3 0 17 9 0 8 27 16 9 2 0 24 1 0 21 chain 42222 chr4 191154276 + 28945653 28946136 L1PA5 6144 + 5661 6142 66372 344 0 1 129 3 0 7 chain 31155 chr4 191154276 + 28959659 28960058 L1PA7 6471 - 10 411 82244 133 1 0 4 4 5 91 0 2 166 chain 72071 chr4 191154276 + 28960058 28960931 L1P2 5180 + 1656 2530 47448 564 9 10 300 chain 11695 chr4 191154276 + 28964111 28964263 L1PA16 3655 + 3421 3575 153498 96 0 2 56 chain 40949 chr4 191154276 + 28989393 28989954 LTR12F 595 - 0 595 67977 380 14 5 13 12 20 31 2 0 41 1 38 67 chain 65371 chr4 191154276 + 29000037 29000967 THE1B-int 1605 + 663 1589 50391 26 44 45 21 6 0 83 32 31 359 0 1 270 0 1 89 chain 42049 chr4 191154276 + 29008054 29008539 L1PA5 6144 + 5627 6117 66559 124 0 1 53 0 1 157 0 3 151 chain 5851 chr4 191154276 + 29019867 29019967 MSTA 426 + 313 414 186674 63 16 17 21 chain 26227 chr4 191154276 + 29046909 29047216 L1PA4 6152 + 5845 6152 99104 307 chain 79192 chr4 191154276 + 29049039 29050338 LTR12C 1709 + 83 1709 43950 18 9 0 5 2 0 28 18 18 38 99 107 168 7 0 139 10 11 39 0 119 64 1 0 74 0 207 99 18 11 75 24 26 57 0 13 211 33 36 63 chain 119750 chr4 191154276 + 29118792 29120236 LTR12C 1709 + 0 1702 31134 301 1 0 418 0 159 234 1 0 5 3 1 106 0 4 172 0 102 45 3 0 155 chain 95507 chr4 191154276 + 29131237 29132326 L1PA4 6152 - 0 1091 37956 267 5 4 587 4 6 22 0 1 204 chain 138349 chr4 191154276 + 29137831 29149228 L1PA7 6471 - 3 1859 26424 10 0 2 702 9502 0 133 1 0 97 43 4 565 1 0 343 chain 12377 chr4 191154276 + 29147557 29147699 L1PA7 6471 - 4 146 150722 142 chain 13121 chr4 191154276 + 29169239 29169439 L1MA6 2487 + 2070 2254 147764 155 28 12 17 chain 4484 chr4 191154276 + 29170519 29170591 L1PB1 5432 + 5353 5422 200977 14 4 3 23 1 0 11 1 0 18 chain 5774 chr4 191154276 + 29192512 29192585 MLT1B 390 - 35 108 187394 73 chain 54472 chr4 191154276 + 29218765 29219387 L1PA5 6144 + 5508 6132 56049 509 0 1 32 0 1 81 chain 512133 chr4 191154276 + 29230927 29237399 L1PA7 6471 + 0 6461 5961 410 10 0 469 17 11 496 8 6 367 1 0 88 2 1 32 0 8 603 1 0 6 0 1 134 16 0 464 0 4 199 6 7 213 6 4 43 11 12 33 5 6 212 2 0 372 1 0 173 2 3 565 9 7 117 1 2 299 0 1 93 19 20 12 0 1 105 10 24 80 1 0 449 0 1 160 1 2 5 3 0 58 15 17 6 2 0 60 chain 3070 chr4 191154276 + 29242185 29242220 Zaphod 902 + 331 366 223581 35 chain 16776 chr4 191154276 + 29258941 29259228 THE1B 368 + 0 306 136181 101 13 16 59 0 2 5 43 57 66 chain 3380 chr4 191154276 + 29280891 29280965 L1M3b 1512 - 733 806 217466 12 1 0 4 2 3 34 7 6 14 chain 10020 chr4 191154276 + 29283431 29283557 L1PA7 6471 - 1324 1450 160482 126 chain 17513 chr4 191154276 + 29283559 29283772 L1PA7 6471 + 5152 5367 134229 52 0 1 38 1 2 122 chain 86953 chr4 191154276 + 29283773 29284867 L1PA7 6471 + 5367 6461 40801 249 1 3 135 0 1 354 3 0 28 1 0 86 5 6 82 19 18 85 0 1 46 chain 38397 chr4 191154276 + 29293905 29294381 L1PA7 6471 + 5992 6470 71575 207 0 1 84 13 14 172 chain 136233 chr4 191154276 + 29318441 29320085 L1PA6 6164 - 2 1639 26792 6 4 0 529 0 4 315 1 0 418 1 0 256 4 0 60 2 1 48 chain 105870 chr4 191154276 + 29332903 29334240 L1PA7 6471 + 5126 6466 35290 488 0 3 23 0 3 35 8 9 450 0 1 131 12 5 90 1 3 99 chain 35322 chr4 191154276 + 29379941 29380407 L1PA8 5853 + 5395 5853 75767 29 2 1 4 0 1 132 1 0 46 2 0 71 2 1 8 1 0 8 1 0 44 2 1 19 1 0 93 chain 24623 chr4 191154276 + 29390921 29391208 AluY 311 + 16 302 106864 116 0 1 149 2 0 20 chain 79695 chr4 191154276 + 29401354 29402273 L1PA3long 6157 + 5232 6157 43737 15 0 1 62 0 4 432 0 1 410 chain 5841 chr4 191154276 + 29410108 29410200 MSTB-int 1649 - 15 108 186762 47 13 14 32 chain 29486 chr4 191154276 + 29422864 29423173 AluYb8 318 + 0 309 86684 309 chain 7988 chr4 191154276 + 29431047 29431159 THE1B 368 - 0 111 171125 56 7 6 49 chain 24022 chr4 191154276 + 29440320 29440612 AluSc 308 + 10 302 110201 292 chain 36870 chr4 191154276 + 29441755 29442150 L1PA3long 6157 - 301 696 73698 395 chain 24408 chr4 191154276 + 29442150 29442427 L1PA3long 6157 + 5880 6157 108040 277 chain 19377 chr4 191154276 + 29447786 29448193 L1PB1 5432 + 5039 5423 129005 55 11 20 24 10 8 10 20 14 50 2 1 15 1 0 44 1 0 16 1 0 4 2 0 11 9 0 16 7 4 15 2 0 24 1 0 21 1 0 13 5 4 10 1 0 5 chain 8146 chr4 191154276 + 29474092 29474198 L1MA1 4479 + 229 333 170252 50 2 0 54 chain 168980 chr4 191154276 + 29525726 29527845 L1PA7 6471 + 4330 6464 22169 342 0 4 271 2 0 84 0 1 163 0 1 158 4 7 5 2 0 198 4 0 52 1 4 78 0 2 34 0 6 36 0 1 67 1 2 462 7 8 148 chain 11349 chr4 191154276 + 29529968 29530115 THE1B 368 + 7 169 154899 32 1 16 114 chain 40148 chr4 191154276 + 29532057 29532502 L1PA3long 6157 + 5702 6146 69110 202 1 0 242 chain 68964 chr4 191154276 + 29533234 29533973 L1HS 6032 - 5 743 48825 99 1 0 639 chain 219840 chr4 191154276 + 29562788 29565301 L1PA5 6144 - 0 2518 17889 118 4 8 18 5 12 6 7 0 1118 1 0 515 0 2 721 chain 153342 chr4 191154276 + 29565301 29567039 L1PA5 6144 + 1925 3664 24128 661 0 1 394 0 1 393 1 0 289 chain 46666 chr4 191154276 + 29587279 29587843 L1PA6 6164 - 448 1014 61482 323 0 2 241 chain 35638 chr4 191154276 + 29587853 29588305 L1PA6 6164 + 5718 6162 75358 292 1 0 122 1 0 4 0 1 19 7 0 6 chain 225423 chr4 191154276 + 29594786 29597751 L1P3 4156 - 1210 4156 17561 312 1 0 4 24 4 481 2 0 4 8 0 363 0 1 27 1 0 191 2 1 217 17 1 92 6 7 313 0 1 4 7 6 238 5 29 27 6 7 4 1 0 210 0 1 81 2 1 70 1 0 9 7 12 228 chain 53582 chr4 191154276 + 29613699 29614348 L1PA7 6471 - 4 653 56620 8 3 0 65 0 1 115 0 1 140 0 1 318 chain 21004 chr4 191154276 + 29620276 29620535 AluY 311 + 41 310 123894 85 8 0 16 0 18 150 chain 30083 chr4 191154276 + 29661120 29661437 AluYb8 318 - 1 318 84550 317 chain 438702 chr4 191154276 + 29675190 29680673 L1PA7 6471 + 725 6469 9091 1032 5 3 880 0 1 67 5 8 82 9 2 143 0 9 54 0 1 537 0 4 71 0 1 378 6 0 7 0 241 288 0 3 278 11 10 342 0 1 147 8 12 294 1 0 23 3 11 27 4 5 15 38 37 66 0 2 500 0 7 8 7 0 147 chain 28599 chr4 191154276 + 29721417 29721741 L1PA2 6032 + 5703 6026 90734 312 2 1 10 chain 10949 chr4 191154276 + 29740223 29740352 L1PA4 6152 - 9 138 156405 129 chain 31039 chr4 191154276 + 29757577 29757974 MLT2A1 477 + 4 397 82457 164 5 2 25 1 0 202 chain 64269 chr4 191154276 + 29758174 29759014 HERVL-int 5654 + 231 1085 50890 218 6 0 100 0 5 38 2 0 4 0 1 85 1 0 103 1 2 55 0 10 18 0 5 51 5 6 153 chain 18574 chr4 191154276 + 29759162 29759403 AluY 311 + 57 310 131296 75 0 1 6 6 16 101 0 1 53 chain 20384 chr4 191154276 + 29773745 29773985 L1PA7 6471 + 6041 6283 125948 90 0 1 29 0 1 121 chain 14166 chr4 191154276 + 29773985 29774173 L1PA7 6471 + 6285 6469 143994 172 5 1 11 chain 157395 chr4 191154276 + 29786371 29788331 HERVL-int 5654 - 0 1964 23679 274 0 2 104 8 1 53 1 2 291 0 1 13 22 22 433 1 7 492 0 1 268 chain 21300 chr4 191154276 + 29803078 29803355 AluY 311 + 8 287 122861 123 0 2 10 3 0 7 8 11 126 chain 219451 chr4 191154276 + 29822359 29825192 L1PA7 6471 - 1 2853 17922 148 25 25 242 0 1 433 2 1 122 37 1 61 3 2 182 0 23 32 0 1 4 1 0 74 2 0 170 7 8 259 6 10 411 0 3 5 3 0 128 1 12 181 1 0 86 0 20 207 chain 78739 chr4 191154276 + 29836546 29837440 L1PA3long 6157 - 0 899 44173 540 6 0 8 0 6 240 0 5 100 chain 19557 chr4 191154276 + 29837454 29837661 L1PA3long 6157 + 5024 5231 128500 207 chain 7341 chr4 191154276 + 29838496 29838657 Tigger3a 397 + 27 252 175152 25 48 107 20 2 7 66 chain 57262 chr4 191154276 + 29865825 29866580 MER4-int 2692 + 1939 2692 54361 62 1 0 12 1 0 112 1 6 139 2 0 10 8 4 9 2 1 340 0 1 41 0 1 15 chain 28380 chr4 191154276 + 29870134 29870469 L1P2 5180 - 4114 5178 91659 247 0 729 88 chain 236832 chr4 191154276 + 29873830 29876520 L1PA4 6152 - 0 2696 16936 147 1 0 98 1 0 826 0 1 199 5 6 244 1 2 281 0 4 864 0 1 23 chain 20814 chr4 191154276 + 29888949 29889186 AluY 311 + 54 290 124558 79 1 0 157 chain 12830 chr4 191154276 + 29889924 29890113 L1PB 1623 - 913 1101 148927 96 4 5 25 6 5 28 1 0 29 chain 18381 chr4 191154276 + 29909423 29909640 L1PA4 6152 + 5926 6143 131838 69 1 0 8 0 1 139 chain 50533 chr4 191154276 + 29913093 29913766 LTR12D 1347 - 0 760 58628 247 0 97 172 3 0 83 24 0 37 0 17 107 chain 118988 chr4 191154276 + 29926351 29927718 L1PA4 6152 - 1 1371 31417 687 0 1 184 6 7 485 0 1 5 chain 510579 chr4 191154276 + 29930959 29937625 L1PA7 6471 + 19 6470 6113 392 11 0 236 11 11 18 4 6 8 12 0 182 0 1 476 7 6 207 0 1 211 195 8 852 30 10 50 2 1 178 0 1 15 6 10 604 1 0 236 6 5 90 1 2 224 1 0 608 0 4 48 0 1 576 0 1 131 3 4 192 0 4 73 4 3 399 8 10 168 1 0 4 6 1 162 0 4 17 chain 11633 chr4 191154276 + 29944975 29945106 L1PA6 6164 + 6028 6159 153758 131 chain 50600 chr4 191154276 + 29975021 29975563 L1PA2 6032 - 3 545 58578 542 chain 33732 chr4 191154276 + 30016590 30016993 L1PA5 6144 - 2 398 78040 8 8 0 137 0 1 250 chain 10298 chr4 191154276 + 30047894 30048019 L1PA15 4387 + 3371 3496 158425 125 chain 36189 chr4 191154276 + 30048019 30048448 L1PA4 6152 - 2563 2992 74309 429 chain 225589 chr4 191154276 + 30048448 30051023 L1PA4 6152 + 3583 6152 17551 106 1 0 18 1 0 4 0 1 66 0 1 856 3 0 1000 1 0 181 1 0 76 1 0 260 chain 25907 chr4 191154276 + 30065952 30066240 AluSp 311 + 9 297 100392 288 chain 9895 chr4 191154276 + 30071309 30071428 Tigger3c 601 + 451 570 161097 119 chain 108594 chr4 191154276 + 30094147 30095544 LTR12C 1709 + 0 1709 34539 277 8 9 140 19 20 150 2 1 231 0 159 23 0 166 48 0 4 135 19 1 345 chain 48065 chr4 191154276 + 30149388 30150092 MER4E1 777 + 0 769 60432 17 2 3 132 0 10 221 3 0 80 35 88 29 3 7 45 3 1 103 4 6 27 chain 2875 chr4 191154276 + 30151291 30151412 LTR7 482 + 86 289 227427 15 15 14 17 49 132 25 chain 3238 chr4 191154276 + 30151865 30151904 MLT1D 503 - 2 41 220276 39 chain 25013 chr4 191154276 + 30152210 30152608 LTR7 482 + 0 482 104716 39 0 1 10 27 65 109 0 1 38 1 32 21 1 11 92 16 18 32 0 1 12 chain 3270 chr4 191154276 + 30192751 30192790 L1MB7 1623 + 1376 1415 219593 39 chain 87456 chr4 191154276 + 30217292 30218362 MER11B 1079 - 0 1079 40577 29 12 1 18 0 1 257 5 7 432 0 17 317 chain 32219 chr4 191154276 + 30233725 30234153 MER57A1 433 - 0 433 80490 101 10 13 36 9 11 272 chain 88029 chr4 191154276 + 30234526 30235535 LTR5A 1029 - 2 1029 40362 42 0 18 33 0 1 785 1 0 148 chain 25379 chr4 191154276 + 30242382 30242690 AluYk4 311 - 4 309 102790 12 4 0 89 0 2 78 1 0 124 chain 142363 chr4 191154276 + 30252516 30254353 L1PA8 5853 - 0 1834 25750 88 29 27 45 24 22 30 2 0 11 0 6 16 2 0 46 2 1 304 1 0 15 2 0 243 6 5 410 0 3 241 2 0 134 8 11 176 chain 53821 chr4 191154276 + 30269266 30269923 L1PA5 6144 + 5491 6140 56467 388 1 0 12 2 1 100 7 0 58 0 1 89 chain 113639 chr4 191154276 + 30273730 30275153 L1PA7 6471 - 4 1435 33194 130 0 3 202 0 1 330 0 4 94 7 5 77 2 1 17 0 1 103 0 2 461 chain 49805 chr4 191154276 + 30284864 30285453 LTR10C 591 + 0 591 59152 15 0 1 60 0 1 514 chain 42768 chr4 191154276 + 30309345 30309815 L1PA3long 6157 - 0 470 65693 470 chain 18026 chr4 191154276 + 30310154 30310522 MSTA 426 - 0 410 132787 70 40 60 60 2 0 28 1 0 4 1 2 54 59 83 49 chain 65071 chr4 191154276 + 30319582 30320339 L1PA5 6144 + 5387 6144 50540 757 chain 22558 chr4 191154276 + 30334614 30334929 MLT2A1 477 + 45 395 117774 9 0 22 62 0 1 23 5 12 29 2 1 92 0 7 21 1 0 71 chain 55556 chr4 191154276 + 30339309 30340067 L1PA8 5853 + 5099 5853 55381 111 1 0 142 5 6 163 7 10 31 1 0 47 2 0 73 1 0 11 4 3 41 26 24 92 chain 9248 chr4 191154276 + 30340080 30340224 MER87 546 - 397 536 164320 71 0 1 16 17 11 40 chain 84876 chr4 191154276 + 30426056 30427139 L1P3 4156 + 3045 4116 41562 781 1 0 19 8 0 153 2 1 108 2 0 9 chain 2563 chr4 191154276 + 30458438 30458515 MLT1I-int 1022 - 418 545 232346 17 1 0 13 29 80 17 chain 29458 chr4 191154276 + 30468558 30468868 AluYa5 310 - 0 310 86806 310 chain 9022 chr4 191154276 + 30498542 30498645 L1PA6 6164 + 6056 6159 165479 103 chain 153977 chr4 191154276 + 30517280 30519192 L1PA7 6471 + 4544 6470 24091 122 0 12 184 0 3 35 1 0 4 5 6 45 2 0 548 0 2 115 2 1 80 4 2 169 1 0 144 0 2 118 1 2 57 0 1 270 1 0 4 chain 19059 chr4 191154276 + 30551961 30552261 THE1A 353 + 0 341 129944 105 6 5 92 1 0 27 0 1 4 12 11 15 11 54 27 chain 121153 chr4 191154276 + 30552273 30553840 THE1A-int 1579 + 0 1574 30652 266 0 3 37 0 1 269 1 0 8 0 1 171 17 18 146 0 1 62 16 11 170 0 1 82 0 3 92 0 1 150 2 1 27 7 9 44 chain 25901 chr4 191154276 + 30561000 30561379 MER57B1 401 + 0 401 100432 85 8 10 22 5 6 28 13 34 117 2 0 99 chain 3620 chr4 191154276 + 30569219 30569282 L1MA6 2487 + 2343 2402 213336 35 8 5 15 1 0 4 chain 107799 chr4 191154276 + 30585039 30586410 L1PA10 4194 - 48 1412 34779 29 3 0 1153 5 1 181 chain 3870 chr4 191154276 + 30609576 30609625 L1PREC2 3366 - 1074 1124 209319 12 0 1 37 chain 17822 chr4 191154276 + 30612584 30612825 MSTA-int 1630 - 8 249 133331 105 2 1 34 7 8 93 chain 125139 chr4 191154276 + 30625810 30627354 L1PA7 6471 - 1 1556 29347 72 12 15 766 10 13 269 3 4 228 0 1 145 0 3 39 chain 37948 chr4 191154276 + 30647846 30648260 L1PA4 6152 + 5722 6136 72213 414 chain 57514 chr4 191154276 + 30662994 30664109 MER4E1 777 + 0 767 54229 18 2 0 154 3 0 7 22 0 46 3 0 43 321 0 79 1 0 165 0 1 22 14 17 215 chain 75010 chr4 191154276 + 30684138 30685152 MER11A 1151 - 1 1151 46011 265 0 23 26 1 0 89 0 4 51 7 10 123 1 0 12 12 13 88 5 6 51 0 1 8 1 2 82 10 7 56 0 5 58 0 102 68 chain 2052 chr4 191154276 + 30686355 30686593 LTR9 672 - 10 232 238171 16 1 0 5 42 40 13 12 16 11 119 102 19 chain 24824 chr4 191154276 + 30783159 30783457 AluSp 311 - 13 311 105747 298 chain 92742 chr4 191154276 + 30870909 30872057 L1PA7 6471 - 4 1152 38733 9 2 0 136 2 3 698 1 0 288 0 2 12 chain 61310 chr4 191154276 + 30875636 30876322 L1PA3long 6157 + 5466 6157 52202 374 5 10 307 chain 14406 chr4 191154276 + 30878373 30878595 L1PA8 5853 - 0 218 143191 90 4 3 19 2 1 39 14 13 9 1 0 44 chain 141506 chr4 191154276 + 30887186 30888763 L1PA3long 6157 + 4588 6157 25898 1409 7 0 123 9 8 29 chain 83017 chr4 191154276 + 30908851 30909873 L1PA6 6164 + 5126 6162 42327 39 1 2 89 0 1 57 0 5 69 10 11 432 0 1 218 5 10 102 chain 222840 chr4 191154276 + 30910135 30912939 L1PA7 6471 + 3687 6469 17717 223 48 0 90 1 3 557 0 1 113 0 4 147 0 1 643 0 5 29 0 3 95 0 1 16 2 6 36 1 8 15 8 6 618 10 9 125 0 1 27 chain 51658 chr4 191154276 + 30928934 30929495 SVA_D 2077 + 1518 2077 57857 549 2 0 10 chain 14659 chr4 191154276 + 30945251 30945459 MER30 238 + 0 238 142396 14 4 22 73 4 16 113 chain 22250 chr4 191154276 + 30996866 30997151 AluY 311 + 9 295 119115 68 0 5 50 0 1 144 10 5 13 chain 22045 chr4 191154276 + 31050627 31050878 L1PA4 6152 - 0 256 120044 6 0 5 245 chain 25111 chr4 191154276 + 31084441 31084758 AluY 311 + 0 311 104221 48 12 5 79 0 1 178 chain 5445 chr4 191154276 + 31086121 31086185 MSTB 430 - 60 124 190567 64 chain 3722 chr4 191154276 + 31152510 31152557 MER58D 378 - 9 56 211614 47 chain 4803 chr4 191154276 + 31162744 31162815 MADE1 96 + 9 96 197324 22 3 19 46 chain 15177 chr4 191154276 + 31164183 31164357 L1PA7 6471 - 14 188 140832 174 chain 42056 chr4 191154276 + 31168687 31169234 MLT2A2 560 - 0 560 66549 12 0 2 117 0 3 220 4 5 115 6 13 73 chain 26813 chr4 191154276 + 31174611 31175037 Tigger3b 1229 + 265 678 96931 30 0 9 24 1 0 45 10 13 5 3 0 123 28 8 47 3 0 9 0 2 11 0 1 43 1 0 43 chain 52980 chr4 191154276 + 31175780 31176483 L1PA11 4918 - 419 1140 57028 10 3 2 11 2 0 58 0 17 6 1 0 48 1 2 18 4 3 306 0 5 235 chain 15809 chr4 191154276 + 31176977 31177315 Tigger3 1187 + 750 1087 138931 47 1 0 30 7 0 8 1 8 59 33 34 21 10 0 16 47 56 58 chain 10515 chr4 191154276 + 31186164 31186320 LTR12C 1709 - 838 1034 152482 21 0 40 37 15 0 7 2 17 74 chain 13603 chr4 191154276 + 31186320 31186501 LTR12C 1709 - 549 777 145965 36 0 32 7 2 17 136 chain 17884 chr4 191154276 + 31200309 31200588 THE1A 353 - 55 353 133154 61 15 35 71 23 22 24 0 1 8 1 0 76 chain 49598 chr4 191154276 + 31203317 31204017 LTR12_ 688 + 0 688 59322 103 37 0 39 1 2 127 6 0 261 13 10 10 16 49 87 chain 28698 chr4 191154276 + 31205822 31206134 AluYb8 318 - 9 318 90334 183 3 0 126 chain 21649 chr4 191154276 + 31251466 31251728 AluSc5 308 + 20 282 121575 262 chain 21338 chr4 191154276 + 31256149 31256444 L1PA8 5853 + 5554 5853 122723 6 0 6 44 2 0 67 4 3 60 2 1 17 0 2 93 chain 20929 chr4 191154276 + 31256478 31256819 THE1D 372 - 40 372 124180 106 14 20 13 0 3 110 43 25 55 chain 9627 chr4 191154276 + 31261207 31261576 LTR12D 1347 + 587 1075 162461 22 1 42 38 46 22 41 167 270 27 1 0 26 chain 11620 chr4 191154276 + 31269819 31269966 THE1D 372 + 224 371 153811 97 2 0 10 0 2 38 chain 34498 chr4 191154276 + 31279230 31279658 L1PA7 6471 + 6036 6465 76911 102 0 1 121 0 3 196 3 0 6 chain 25047 chr4 191154276 + 31327751 31328102 THE1B 368 - 0 361 104560 176 4 0 15 12 11 101 6 21 37 chain 46471 chr4 191154276 + 31356949 31357557 PABL_B 668 - 52 668 61620 182 0 3 80 2 1 72 2 5 219 9 12 42 chain 28328 chr4 191154276 + 31363470 31363768 AluYg6 310 + 0 298 91840 298 chain 18434 chr4 191154276 + 31384903 31385106 L1PA4 6152 - 17 220 131682 203 chain 3344 chr4 191154276 + 31386112 31386149 L1M4c 1769 + 207 244 218150 37 chain 51296 chr4 191154276 + 31386179 31386853 L1PA8 5853 - 1 664 58115 14 1 2 76 1 0 19 2 1 51 4 2 5 1 0 74 2 0 44 1 0 50 0 1 264 6 1 59 chain 173215 chr4 191154276 + 31401117 31403257 L1PA7 6471 - 5 2137 21691 204 0 2 97 4 5 386 11 4 133 0 1 13 1 0 309 2 0 357 3 0 151 2 0 132 0 4 275 2 1 58 chain 131404 chr4 191154276 + 31440091 31441639 LTR12C 1709 + 0 1709 27776 309 0 1 4 1 0 304 0 1 80 0 159 253 1 0 5 3 1 107 0 4 481 chain 29071 chr4 191154276 + 31443458 31444110 MER48 407 + 0 407 88676 30 0 1 4 1 0 43 276 31 298 chain 21861 chr4 191154276 + 31443566 31443810 L1PA5 6144 + 5900 6144 120779 244 chain 3726 chr4 191154276 + 31456754 31456795 L1MA5A 2387 + 2249 2290 211534 41 chain 45271 chr4 191154276 + 31464321 31464835 MER9a1 513 + 0 513 62746 456 1 0 57 chain 71966 chr4 191154276 + 31466580 31468413 HUERS-P1-int 2401 - 714 2249 47490 23 51 43 34 1 0 6 30 16 29 1 0 52 28 29 9 3 1 43 1 0 14 1 0 4 104 23 30 5 4 52 15 9 29 1 0 13 0 20 45 1 0 30 12 9 43 18 14 28 10 9 9 1 0 8 1 0 174 16 8 103 14 17 22 36 16 73 2 1 24 12 9 14 10 1 13 7 4 26 18 0 23 2 0 8 1 0 38 1 0 7 3 0 43 140 87 7 2 0 14 4 2 32 6 1 12 1 0 25 1 0 4 56 0 31 9 4 14 chain 9763 chr4 191154276 + 31468910 31469042 LTR8 732 - 0 134 161777 114 1 3 17 chain 6951 chr4 191154276 + 31475636 31475714 L1PA2 6032 + 5954 6032 177800 78 chain 54452 chr4 191154276 + 31500717 31501378 L1PA7 6471 - 6 665 56070 505 2 0 154 chain 29247 chr4 191154276 + 31502950 31503345 MLT2A1 477 + 2 385 87813 167 4 1 10 1 0 24 0 1 33 15 6 141 chain 456276 chr4 191154276 + 31503417 31509047 HERVL-int 5654 + 0 5654 8533 362 19 30 214 0 1 37 1 0 4 3 1 471 11 12 421 0 1 804 1 2 139 0 5 38 0 1 284 4 5 329 10 1 489 0 3 438 0 1 82 0 6 317 0 1 491 0 4 232 1 0 181 0 1 175 1 0 71 chain 27628 chr4 191154276 + 31509047 31509423 MLT2A1 477 + 0 376 94273 52 15 14 104 4 1 13 0 1 19 0 3 169 chain 40827 chr4 191154276 + 31605395 31605926 MLT2A2 560 - 24 558 68135 142 0 2 39 9 10 341 chain 64086 chr4 191154276 + 31631474 31632334 L1PA8A 6298 - 7 870 50970 776 41 43 10 0 1 33 chain 3961 chr4 191154276 + 31647879 31647939 MLT1A0 366 + 297 354 207978 29 4 1 27 chain 13287 chr4 191154276 + 31665029 31665230 L1PA8 5853 - 0 198 147141 93 1 0 19 2 1 34 7 8 5 1 0 14 1 0 24 chain 28282 chr4 191154276 + 31672350 31672661 AluYb8 318 - 8 318 91996 297 1 0 13 chain 28295 chr4 191154276 + 31672822 31673150 L1PA4 6152 + 5819 6152 91962 322 0 5 6 chain 18313 chr4 191154276 + 31685908 31686108 L1PA5 6144 - 1618 1818 132043 200 chain 141992 chr4 191154276 + 31686113 31687712 L1PA5 6144 + 4533 6132 25824 758 1 0 594 1 0 30 0 2 13 0 1 67 1 0 134 chain 13619 chr4 191154276 + 31694460 31694655 Tigger1 2417 + 579 984 145905 32 0 208 34 6 8 123 chain 6058 chr4 191154276 + 31700873 31700945 L1PA4 6152 - 0 77 184757 6 0 5 66 chain 20584 chr4 191154276 + 31705481 31705814 THE1A 353 - 0 339 124721 155 7 10 54 22 25 13 1 0 41 19 20 21 chain 117884 chr4 191154276 + 31705814 31707397 THE1A-int 1579 - 6 1579 31838 12 5 14 116 16 15 259 32 9 141 0 1 353 0 3 576 5 6 68 chain 35152 chr4 191154276 + 31752094 31752519 L1PA7 6471 - 10 437 75987 139 1 2 143 0 1 142 chain 3735 chr4 191154276 + 31767617 31767665 L1MC4 1079 + 713 760 211380 28 1 0 19 chain 39373 chr4 191154276 + 31769496 31770029 MLT2A2 560 - 1 560 70212 42 5 1 6 0 5 5 1 0 9 0 1 41 0 14 17 10 21 397 chain 22823 chr4 191154276 + 31803274 31803575 L1PA10 4194 - 44 343 116484 34 6 4 261 chain 8256 chr4 191154276 + 31841640 31841734 L1PA8 5853 + 5759 5853 169643 94 chain 7924 chr4 191154276 + 31872050 31872239 L1MA3 4352 - 24 197 171486 13 1 0 22 12 13 5 3 0 17 2 0 41 9 12 30 20 6 14 chain 24854 chr4 191154276 + 31906780 31907146 THE1B 368 - 0 368 105604 200 1 0 86 1 0 6 18 19 14 1 6 24 2 0 13 chain 3434 chr4 191154276 + 31908244 31908286 THE1B-int 1605 - 1549 1591 216516 42 chain 3429 chr4 191154276 + 31915374 31915410 THE1C 375 + 2 38 216594 36 chain 71827 chr4 191154276 + 31929399 31930360 MER11A 1151 + 0 1151 47551 55 0 99 22 8 0 46 1 9 59 10 6 30 0 2 112 0 1 97 0 1 145 0 2 4 1 0 117 0 81 28 0 9 41 1 0 14 0 1 170 chain 5100 chr4 191154276 + 31934160 31934561 MER110A 451 - 9 430 194087 45 311 330 24 1 2 20 chain 97842 chr4 191154276 + 31968390 31969452 L1PA2 6032 - 6 1068 37322 1062 chain 3143 chr4 191154276 + 31984580 31984614 LTR49 580 - 3 37 222095 34 chain 2784 chr4 191154276 + 31995878 31995908 LTR8 732 - 693 723 228936 30 chain 15059 chr4 191154276 + 31995935 31996189 MER4D1 891 - 539 806 141144 42 1 2 6 1 0 30 0 13 5 0 2 33 1 0 84 28 27 23 chain 120298 chr4 191154276 + 31997828 31999411 LTR12C 1709 + 0 1709 30939 278 17 17 167 0 2 10 1 0 25 30 0 107 1 2 98 0 159 247 1 0 5 3 1 99 18 11 317 0 2 80 1 0 15 0 4 63 chain 3701 chr4 191154276 + 32003324 32003401 L1PB1 5432 + 5346 5420 211921 11 14 13 25 1 0 6 1 0 19 chain 24208 chr4 191154276 + 32009659 32010025 THE1C 375 + 0 363 109168 58 15 16 138 29 25 126 chain 294980 chr4 191154276 + 32012537 32016445 L1PA8A 6298 + 2407 6290 13709 93 4 0 8 29 4 58 7 1 381 13 17 12 0 1 96 5 0 313 0 4 10 12 0 42 0 3 46 0 5 377 0 1 101 17 3 186 10 10 162 24 17 118 0 2 181 4 0 166 7 4 157 3 1 98 0 7 40 1 2 126 31 32 203 3 6 67 0 2 397 1 24 299 chain 60040 chr4 191154276 + 32024173 32024881 LTR30 714 + 0 714 52803 253 0 5 50 0 1 405 chain 4310 chr4 191154276 + 32031479 32031560 MER65D 500 + 420 500 203100 17 16 15 48 chain 10357 chr4 191154276 + 32065166 32065296 HERVL-int 5654 - 2496 2625 158876 12 1 0 117 chain 19125 chr4 191154276 + 32069439 32069721 L1PA16 3655 - 81 349 129760 59 33 19 190 chain 9623 chr4 191154276 + 32081686 32082066 THE1D 372 - 0 372 162478 28 7 6 52 27 12 28 199 207 39 chain 27597 chr4 191154276 + 32106061 32106418 MER51B 395 + 39 395 94353 9 0 1 196 2 0 150 chain 77390 chr4 191154276 + 32128092 32128934 L1PA2 6032 - 9 863 44786 11 1 0 146 0 13 684 chain 33705 chr4 191154276 + 32128934 32129315 L1PA2 6032 + 4800 5181 78090 381 chain 28651 chr4 191154276 + 32143132 32143515 LTR22A 463 - 13 398 90519 87 1 0 121 2 3 10 7 8 50 0 1 105 chain 104892 chr4 191154276 + 32144138 32145566 L1PA7 6471 - 1 3346 35529 70 0 2 155 7 8 134 57 117 281 2 3 68 12 10 128 0 1 302 0 1 118 0 1853 94 chain 4328 chr4 191154276 + 32156488 32156538 MADE1 96 + 46 96 202853 50 chain 17352 chr4 191154276 + 32157771 32157992 L1PA5 6144 - 4 218 134653 151 8 1 62 chain 25815 chr4 191154276 + 32157992 32158284 L1PA5 6144 + 5626 5918 100812 292 chain 27560 chr4 191154276 + 32192860 32193172 L1PA4 6152 + 5831 6143 94467 312 chain 4617 chr4 191154276 + 32194304 32194359 MLT1A 405 + 325 380 199433 55 chain 18433 chr4 191154276 + 32200752 32201032 AluSc 308 + 13 292 131685 96 43 42 141 chain 24005 chr4 191154276 + 32218503 32218785 AluY 311 + 5 285 110299 126 2 0 154 chain 28672 chr4 191154276 + 32242658 32243071 L1PA8 5853 + 5446 5853 90437 161 3 1 68 4 3 11 1 0 50 2 1 14 6 5 93 chain 40750 chr4 191154276 + 32247217 32247711 MER9a3 513 + 0 513 68238 18 0 2 238 0 17 238 chain 43912 chr4 191154276 + 32275105 32275597 MER9a1 513 - 9 501 64321 492 chain 41991 chr4 191154276 + 32281986 32282521 L1PA7 6471 + 5924 6461 66639 242 0 1 131 10 11 152 chain 44791 chr4 191154276 + 32285400 32286001 PABL_B 668 - 17 668 63305 300 2 1 13 12 16 36 3 48 51 0 1 72 0 1 112 chain 18597 chr4 191154276 + 32303384 32303739 THE1B 368 + 5 357 131239 39 79 80 44 1 0 100 24 21 68 chain 9287 chr4 191154276 + 32331750 32331884 MER50 708 + 1 130 164128 48 10 5 76 chain 9206 chr4 191154276 + 32353753 32353937 MER30 238 - 4 200 164526 23 27 24 20 6 0 9 0 6 23 7 22 69 chain 552245 chr4 191154276 + 32362197 32368202 L1PA2 6032 - 13 6032 1166 144 0 1 967 1 0 10 0 13 35 0 1 4112 1 0 253 0 1 482 chain 36951 chr4 191154276 + 32386277 32386757 L1PA7 6471 + 5983 6461 73582 148 0 1 218 18 15 96 chain 475989 chr4 191154276 + 32410708 32416732 L1PA7 6471 + 1 6469 7855 214 15 16 181 1 0 179 0 21 756 8 7 12 0 3 165 1 0 58 0 9 115 0 19 483 0 1 248 1 0 149 7 0 5 3 0 113 6 10 129 0 2 39 1 2 146 14 11 161 0 1 15 1 3 8 0 1 240 0 1 304 0 1 90 0 1 553 7 9 26 0 378 134 0 3 85 4 6 122 0 3 27 0 1 26 6 5 323 3 2 87 1 0 100 4 9 401 1 2 83 5 4 24 0 2 134 chain 42197 chr4 191154276 + 32432260 32432808 MLT2A2 560 - 0 560 66398 56 4 5 86 7 18 395 chain 54594 chr4 191154276 + 32475974 32476582 L1PA3long 6157 + 5547 6155 55972 608 chain 72583 chr4 191154276 + 32518457 32519249 L1PA2 6032 - 0 792 47089 792 chain 75578 chr4 191154276 + 32519249 32520060 L1PA2 6032 + 4400 5211 45729 811 chain 56616 chr4 191154276 + 32523023 32523756 LTR12 884 - 15 884 54766 113 0 8 293 1 2 42 4 1 34 2 0 153 0 132 91 chain 16200 chr4 191154276 + 32560198 32560391 L1PA5 6144 + 5944 6136 137752 37 0 2 5 2 0 6 1 0 142 chain 34294 chr4 191154276 + 32586208 32586607 L1PA7 6471 - 1 400 77222 399 chain 4147 chr4 191154276 + 32588854 32588902 MER33 330 - 264 312 205281 48 chain 9118 chr4 191154276 + 32607394 32607557 MSTA-int 1630 - 1452 1616 164979 38 0 1 43 10 0 9 21 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285 116563 132 0 1 19 7 11 122 chain 44665 chr4 191154276 + 32943327 32943858 L1PA7 6471 - 67 619 63417 127 0 1 160 0 20 244 chain 12864 chr4 191154276 + 32947944 32948117 L1PB 1623 - 141 312 148778 28 2 1 7 1 0 135 chain 7195 chr4 191154276 + 32973355 32973445 LOR1a 498 + 361 453 176104 38 0 2 52 chain 9430 chr4 191154276 + 33002515 33002636 MER47A 366 - 191 312 163414 121 chain 352533 chr4 191154276 + 33003657 33007854 L1PA6 6164 + 1948 6154 11535 525 7 0 125 0 3 196 0 4 368 0 1 19 0 1 79 7 0 260 9 10 285 0 1 476 0 2 1005 1 0 115 0 1 293 20 29 85 0 1 322 chain 7164 chr4 191154276 + 33021629 33021713 L1PA7 6471 + 6382 6466 176313 84 chain 8962 chr4 191154276 + 33025111 33025310 Tigger3a 397 + 61 312 165818 14 19 67 68 2 0 35 32 8 12 0 30 17 chain 3393 chr4 191154276 + 33039228 33039268 MER61B 427 + 52 92 217247 40 chain 7351 chr4 191154276 + 33054674 33054809 MLT2C2 476 - 345 472 175090 33 11 13 55 11 1 25 chain 8107 chr4 191154276 + 33129618 33129822 L1PB1 5432 - 5 186 170450 5 2 0 18 1 0 13 1 0 18 1 0 12 17 15 15 1 0 4 3 1 18 24 12 16 1 0 34 chain 17718 chr4 191154276 + 33180948 33181309 L1PB1 5432 - 5 325 133650 5 2 0 13 2 0 17 1 0 22 1 0 24 2 0 12 34 21 11 1 0 6 2 0 15 1 0 44 1 0 18 1 0 51 2 0 9 5 1 23 1 0 20 7 0 8 chain 18515 chr4 191154276 + 33209306 33209526 THE1A-int 1579 + 1354 1571 131459 81 3 0 136 chain 84332 chr4 191154276 + 33210468 33211867 L1PB1 5432 + 4042 5427 41775 122 0 4 296 24 34 128 3 0 79 0 2 85 34 37 172 1 2 47 5 6 47 85 69 48 2 1 15 7 6 39 1 0 15 17 13 18 2 0 5 41 36 5 0 1 17 1 0 13 1 0 19 1 0 4 chain 7646 chr4 191154276 + 33228050 33228155 L1PA17 2846 - 196 298 173255 18 1 0 41 2 0 43 chain 22892 chr4 191154276 + 33239428 33239709 L1P2 5180 - 1948 2230 116138 220 0 1 61 chain 30466 chr4 191154276 + 33251579 33251998 LTR19A 502 - 45 502 83501 137 8 9 54 1 2 18 1 0 8 10 47 182 chain 24506 chr4 191154276 + 33252755 33253061 AluYf4 310 + 0 302 107512 125 6 1 80 0 1 95 chain 4653 chr4 191154276 + 33273796 33273860 MER58B 340 - 133 201 199040 32 1 5 31 chain 106001 chr4 191154276 + 33289923 33291133 L1P1 4361 - 903 2118 35258 242 0 1 7 0 1 224 0 2 602 0 1 135 chain 82738 chr4 191154276 + 33291133 33292087 L1PA5 6144 + 5189 6142 42408 535 0 1 272 1 2 129 3 0 14 chain 62202 chr4 191154276 + 33309932 33310716 L1PA7 6471 + 5674 6470 51803 462 0 1 171 0 6 6 12 6 104 1 13 23 1 0 4 chain 4345 chr4 191154276 + 33328906 33328966 L1MC1 2226 + 2138 2196 202656 14 1 0 32 1 0 12 chain 15271 chr4 191154276 + 33378919 33379282 THE1B 368 + 0 368 140567 111 0 3 6 109 0 9 9 122 55 24 22 40 chain 4865 chr4 191154276 + 33432476 33432555 MADE1 96 - 1 96 196632 26 11 27 42 chain 18710 chr4 191154276 + 33434186 33434400 L1PA5 6144 - 19 233 130921 214 chain 26917 chr4 191154276 + 33453705 33454061 THE1A 353 + 0 353 96566 110 1 0 191 5 3 49 chain 105270 chr4 191154276 + 33458369 33459560 L1PA5 6144 + 4935 6140 35434 113 0 14 235 0 4 503 1 0 325 3 0 11 chain 144466 chr4 191154276 + 33503237 33505474 L1PB1 5432 - 17 2187 25403 11 1 0 13 1 0 21 1 0 24 2 0 19 3 0 19 27 14 11 7 6 39 8 7 10 2 1 54 2 0 7 106 56 83 4 6 17 0 2 5 8 6 57 0 1 218 1 0 82 2 0 5 18 21 121 0 4 513 0 1 221 4 8 89 0 2 5 2 0 81 4 0 130 43 44 112 1 0 4 5 6 14 chain 51836 chr4 191154276 + 33518131 33518761 LTR14B 630 - 0 630 57730 302 0 1 4 2 1 322 chain 24352 chr4 191154276 + 33533393 33533682 L1PA7 6471 - 7 296 108362 289 chain 141096 chr4 191154276 + 33553592 33555351 L1PA7 6471 - 5 1783 25970 13 4 8 285 1 2 262 1 0 183 8 3 92 0 4 174 7 8 549 18 33 162 chain 115674 chr4 191154276 + 33558455 33560125 L1PA6 6164 - 2 1393 32566 19 0 1 203 0 7 359 0 1 84 292 3 242 0 1 4 1 0 223 0 1 243 chain 26285 chr4 191154276 + 33559123 33559412 L1PA3long 6157 - 8 297 98884 289 chain 5207 chr4 191154276 + 33611703 33611770 L1PA13 3608 + 2241 2308 192945 67 chain 94534 chr4 191154276 + 33619667 33620719 L1PA3long 6157 + 5104 6155 38201 256 0 1 179 2 0 615 chain 14918 chr4 191154276 + 33631243 33631422 L1PA7 6471 - 875 1055 141580 48 0 1 131 chain 71285 chr4 191154276 + 33631425 33632304 L1PA7 6471 + 5589 6470 47809 30 1 4 843 1 0 4 chain 344280 chr4 191154276 + 33663778 33668201 L1PA8 5853 - 0 4422 11778 5 0 1 62 0 1 21 4 3 19 2 1 61 2 1 70 3 1 43 5 4 549 0 2 164 0 1 280 0 8 166 0 1 49 1 0 120 4 5 255 0 1 155 0 1 408 7 6 159 0 1 8 8 0 69 2 1 39 0 1 16 20 19 1050 4 0 42 0 1 439 1 8 7 6 0 98 chain 36317 chr4 191154276 + 33668754 33669212 L1PA7 6471 + 6010 6470 74484 66 5 7 240 0 1 142 1 0 4 chain 13398 chr4 191154276 + 33693758 33694048 THE1B 368 - 69 368 146730 59 82 89 34 7 10 41 6 5 61 chain 31410 chr4 191154276 + 33701092 33701565 MER9a3 513 + 15 482 81796 4 0 1 86 5 6 67 13 14 63 15 14 24 2 1 116 16 8 14 0 1 48 chain 29109 chr4 191154276 + 33701682 33701996 AluYb9 318 + 0 314 88510 314 chain 413329 chr4 191154276 + 33732326 33737648 HERVL-int 5654 - 172 5526 9716 100 4 6 147 7 4 502 0 2 5 8 6 380 0 1 235 0 1 509 1 2 140 3 0 5 10 13 209 0 1 112 0 1 217 0 7 33 8 19 35 1 2 428 1 0 4 5 6 556 1 0 4 0 1 57 5 7 242 0 1 60 0 1 4 1 0 581 0 13 118 7 0 84 0 1 278 0 1 51 2 0 162 chain 49216 chr4 191154276 + 33742305 33742987 LTR30 714 + 0 704 59579 253 0 5 112 0 5 68 7 18 93 0 1 69 45 46 21 1 0 13 chain 61285 chr4 191154276 + 33743160 33743869 HERV17-int 4347 + 3632 4347 52213 81 0 4 210 0 2 418 chain 63585 chr4 191154276 + 33744182 33744965 LTR17 781 + 0 773 51195 299 10 0 28 0 1 64 7 6 375 chain 84241 chr4 191154276 + 33745814 33746853 L1PA7 6471 - 14 1049 41802 476 3 0 360 1 0 199 chain 35584 chr4 191154276 + 33746853 33747280 L1PA7 6471 + 4992 5420 75306 270 0 1 157 chain 12888 chr4 191154276 + 33767316 33767486 THE1C 375 + 194 375 148678 38 1 12 131 chain 16212 chr4 191154276 + 33773248 33773470 L1PA7 6471 - 7 229 137713 142 0 1 4 13 12 63 chain 89115 chr4 191154276 + 33841126 33842103 L1PA3long 6157 + 5177 6157 39959 135 0 3 55 1 0 528 0 1 258 chain 28451 chr4 191154276 + 33846037 33846338 AluYa5 310 - 9 310 91366 301 chain 79656 chr4 191154276 + 33847188 33848221 MER11C 1089 - 20 1089 43753 4 0 1 144 1 0 54 0 1 127 0 1 38 7 9 132 0 1 171 1 0 65 0 4 62 0 9 16 0 5 105 0 10 47 4 7 10 0 1 45 chain 455451 chr4 191154276 + 33866115 33871974 L1PA7 6471 + 869 6464 8561 428 10 3 823 0 1 274 309 3 231 0 4 46 0 5 51 1 4 9 13 10 591 0 3 129 4 2 821 0 1 55 0 1 193 0 1 108 0 8 45 0 8 455 1 0 278 0 14 149 0 6 69 0 2 759 2 0 5 chain 13020 chr4 191154276 + 33936648 33936813 L1PA7 6471 + 6292 6458 148176 23 0 1 142 chain 9040 chr4 191154276 + 33944838 33944932 AluYa8 305 + 202 296 165380 94 chain 18446 chr4 191154276 + 33976687 33977041 THE1C 375 - 30 375 131654 146 3 0 5 114 108 86 chain 76766 chr4 191154276 + 34026582 34027538 L1PA7 6471 - 4 970 45097 264 0 2 69 0 1 149 1 3 184 8 10 161 0 1 24 0 2 96 chain 25157 chr4 191154276 + 34059125 34059480 THE1A 353 - 0 353 103972 18 3 0 5 1 4 203 18 16 107 chain 19432 chr4 191154276 + 34133870 34134191 THE1C 375 + 0 342 128868 137 1 5 37 0 2 5 52 63 8 0 4 81 chain 3449 chr4 191154276 + 34165175 34165219 L1MA2 4263 + 4014 4058 216217 44 chain 29541 chr4 191154276 + 34202530 34202840 AluYa5 310 - 0 310 86460 310 chain 21942 chr4 191154276 + 34206500 34206858 THE1C 375 + 5 375 120453 167 75 86 71 0 1 45 chain 32847 chr4 191154276 + 34217883 34218395 L1PB1 5432 - 2468 2972 79465 20 0 1 101 2 0 158 6 9 32 17 18 95 21 21 14 11 0 35 chain 162928 chr4 191154276 + 34218396 34220537 L1PB1 5432 + 2964 5101 22947 50 0 1 226 0 1 210 1 0 29 0 2 227 12 18 289 3 0 283 7 5 146 1 0 79 19 10 137 0 1 261 10 11 151 chain 29800 chr4 191154276 + 34226939 34227312 THE1A-int 1579 + 1 374 85433 373 chain 108919 chr4 191154276 + 34250939 34252254 L1PA7 6471 - 7 1328 34457 621 0 3 123 8 7 107 0 4 58 1 0 116 0 1 281 chain 8555 chr4 191154276 + 34268246 34268337 AluYa8 305 + 213 304 167992 91 chain 6543 chr4 191154276 + 34297345 34297428 THE1D 372 + 286 372 180902 19 0 3 64 chain 52905 chr4 191154276 + 34301849 34302443 L1PA4 6152 + 5548 6152 57077 522 0 5 66 0 5 6 chain 109836 chr4 191154276 + 34336557 34337827 LTR12C 1709 - 0 1709 34249 426 0 1 54 0 4 106 3 438 101 1 0 579 chain 25197 chr4 191154276 + 34355330 34355601 AluYa5 310 - 14 310 103755 45 0 25 226 chain 27808 chr4 191154276 + 34362942 34363301 L1PA5 6144 - 1 352 93669 14 3 0 45 9 0 24 0 3 61 2 3 201 chain 7021 chr4 191154276 + 34366126 34366286 MER50 708 - 526 692 177314 75 58 64 27 chain 18654 chr4 191154276 + 34425613 34425903 L1PA8 5853 + 5564 5853 131073 20 0 5 21 2 0 69 1 0 6 6 5 49 7 6 15 2 1 92 chain 40788 chr4 191154276 + 34445669 34446141 L1P1 4361 - 45 516 68191 11 1 0 154 1 0 244 0 1 61 chain 49829 chr4 191154276 + 34446148 34446705 L1PA4 6152 + 5583 6140 59133 557 chain 43500 chr4 191154276 + 34453732 34454296 PABL_A 660 + 0 658 64813 68 0 1 12 0 9 85 2 86 397 chain 98895 chr4 191154276 + 34476262 34477525 L1PA8 5853 + 4595 5853 37052 410 1 0 35 0 6 402 0 1 115 1 0 44 2 0 70 13 11 51 2 1 14 6 5 63 5 1 29 chain 69817 chr4 191154276 + 34477953 34478760 L1PA5 6144 - 0 806 48468 112 1 0 26 1 0 623 0 1 44 chain 26928 chr4 191154276 + 34481157 34481477 L1PA7 6471 + 6147 6467 96521 320 chain 24870 chr4 191154276 + 34497474 34497783 AluY 311 + 5 299 105516 120 16 1 173 chain 54120 chr4 191154276 + 34506100 34506845 MER4E1 777 - 21 777 56281 65 10 7 60 5 6 12 0 1 4 1 0 50 1 9 251 0 1 86 11 13 79 2 3 84 2 0 5 0 3 17 chain 99627 chr4 191154276 + 34507479 34508764 LTR12C 1709 - 0 1709 36879 84 7 6 65 3 54 144 0 1 127 0 4 99 0 209 68 0 118 156 1 0 193 0 43 37 14 11 9 0 4 14 4 3 260 chain 49267 chr4 191154276 + 34510943 34511592 PABL_A 660 - 7 660 59539 183 8 5 16 0 1 115 0 6 233 0 9 7 13 4 74 chain 13092 chr4 191154276 + 34515403 34516007 LTR12 884 + 62 782 147876 28 25 0 94 24 66 24 15 81 23 305 202 35 1 104 14 1 34 15 chain 29541 chr4 191154276 + 34531640 34531950 AluYa5 310 - 0 310 86459 310 chain 85235 chr4 191154276 + 34555340 34556408 MER11B 1079 - 0 1079 41444 29 9 8 124 5 6 142 8 2 221 6 5 4 0 1 208 1 18 311 chain 323049 chr4 191154276 + 34623882 34627530 L1PA4 6152 - 15 3663 12480 1042 1 0 455 0 3 336 1 0 342 0 2 747 3 1 44 1 0 676 chain 33986 chr4 191154276 + 34637741 34638131 L1P3 4156 - 61 451 77634 390 chain 3886 chr4 191154276 + 34638131 34638177 L1PA8 5853 + 5807 5853 209072 46 chain 261007 chr4 191154276 + 34654290 34657171 L1PA3long 6157 + 3276 6157 15642 2881 chain 7419 chr4 191154276 + 34658490 34658603 LOR1b 457 + 8 131 174659 15 14 24 84 chain 56218 chr4 191154276 + 34716740 34717473 LTR30 714 + 0 714 55009 215 1 0 27 22 3 10 2 1 193 8 9 96 1 2 158 chain 10091 chr4 191154276 + 34724105 34724224 MER85 139 + 10 139 160131 79 0 10 40 chain 8440 chr4 191154276 + 34737383 34737480 L1PA3long 6157 - 2 99 168625 97 chain 14021 chr4 191154276 + 34770055 34770230 MER4A1 472 + 279 454 144503 175 chain 22793 chr4 191154276 + 34770789 34771085 AluY 311 + 3 297 116615 120 9 5 136 0 2 31 chain 35908 chr4 191154276 + 34775001 34775467 LTR7C 471 - 22 471 75005 97 1 2 239 0 1 47 19 0 63 chain 10218 chr4 191154276 + 34796349 34796532 MER30B 195 + 6 180 159523 66 32 23 13 0 6 10 6 0 56 chain 30872 chr4 191154276 + 34798093 34798652 L1MA1 4479 - 289 822 82729 14 1 0 4 6 0 13 4 2 6 1 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35020357 35020784 LTR7B 505 + 0 496 86117 105 0 10 69 10 69 17 8 10 82 1 0 79 14 13 42 chain 24682 chr4 191154276 + 35023511 35023877 LTR7B 505 - 64 505 106540 79 1 0 56 6 94 17 33 11 69 0 10 105 chain 97664 chr4 191154276 + 35056459 35057567 L1PA5 6144 - 25 1137 37382 124 0 1 697 0 3 287 chain 24203 chr4 191154276 + 35086100 35086406 L1PA7 6471 - 4 307 109195 8 2 0 149 8 7 139 chain 28362 chr4 191154276 + 35089433 35089761 L1PA5 6144 + 5817 6143 91722 318 2 0 8 chain 37787 chr4 191154276 + 35102131 35102632 LTR2B 499 + 0 499 72434 15 3 0 5 5 3 136 0 1 95 2 5 184 1 0 55 chain 36662 chr4 191154276 + 35110390 35110882 LTR2B 499 + 0 499 74010 15 15 22 122 0 1 284 1 0 55 chain 9851 chr4 191154276 + 35112969 35113204 L1PA16 3655 - 36 253 161340 16 1 0 7 95 78 116 chain 41622 chr4 191154276 + 35141359 35141877 MER9a2 513 + 0 513 67131 15 1 0 4 0 1 391 5 0 102 chain 249490 chr4 191154276 + 35143197 35146315 HERVK9-int 4720 + 36 4720 16283 13 16 12 63 2 1 8 1 0 29 1 0 112 0 1 67 5 6 1059 0 10 79 0 924 231 51 689 118 0 1 379 1 0 782 1 0 100 chain 42364 chr4 191154276 + 35146315 35146833 MER9a2 513 + 0 513 66197 12 6 1 500 chain 9157 chr4 191154276 + 35181758 35181873 L1MA8 2339 - 1867 1984 164778 51 0 2 64 chain 123696 chr4 191154276 + 35184979 35186605 L1PA8 5853 + 4259 5849 29815 50 1 0 11 15 14 29 10 1 86 1 0 4 0 1 30 1 0 525 2 0 493 16 1 56 7 6 41 3 1 71 1 0 10 1 0 50 7 6 15 1 0 89 chain 48001 chr4 191154276 + 35191895 35192467 LTR22 571 + 0 571 60489 82 1 0 489 chain 47254 chr4 191154276 + 35202425 35202986 L1PA5 6144 - 0 563 60999 145 0 3 6 8 9 263 2 0 137 chain 5348 chr4 191154276 + 35211577 35211640 HERVL-int 5654 + 2763 2826 191566 63 chain 13097 chr4 191154276 + 35244234 35244594 THE1B 368 + 2 368 147859 77 161 170 50 0 2 10 13 8 49 chain 22811 chr4 191154276 + 35257622 35257911 THE1A-int 1579 + 1285 1574 116526 289 chain 36671 chr4 191154276 + 35289571 35289975 L1PA4 6152 - 0 404 73997 404 chain 13161 chr4 191154276 + 35296421 35296582 MSTA 426 + 263 424 147607 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chain 111787 chr4 191154276 + 35408445 35410023 THE1A-int 1579 + 0 1579 33728 238 0 3 253 1 0 142 79 72 143 1 3 242 43 47 113 0 1 24 27 26 272 chain 220945 chr4 191154276 + 35418385 35421108 L1PA7 6471 + 3675 6464 17823 161 2 1 171 0 1 19 0 2 176 0 1 386 0 44 31 0 4 113 0 12 158 2 0 644 0 4 18 1 0 88 0 1 731 1 2 21 chain 8764 chr4 191154276 + 35467349 35467505 MER30 238 + 46 228 166847 60 5 0 7 5 30 22 1 10 25 3 0 28 chain 21230 chr4 191154276 + 35473052 35473315 L1PA7 6471 + 6129 6393 123104 191 1 2 71 chain 5756 chr4 191154276 + 35473315 35473385 L1PA7 6471 + 6400 6470 187584 70 chain 29263 chr4 191154276 + 35483416 35483725 AluYb8 318 + 0 309 87725 309 chain 3289 chr4 191154276 + 35492386 35492422 MLT2B4 540 - 0 36 219209 36 chain 73169 chr4 191154276 + 35497625 35498685 L1PA11 4918 + 3471 4508 46938 38 0 1 76 3 1 75 4 0 38 11 8 22 20 12 54 7 0 180 18 19 79 1 0 259 0 4 56 2 1 81 2 0 13 1 0 20 chain 20231 chr4 191154276 + 35533559 35533878 THE1B 368 + 0 356 126438 22 18 33 70 0 24 20 6 5 125 14 13 44 chain 22378 chr4 191154276 + 35537733 35538018 L1PA5 6144 - 3 284 118594 6 5 0 132 1 0 4 4 6 133 chain 26173 chr4 191154276 + 35550204 35550571 MER75 514 - 29 400 99312 207 10 11 49 8 12 19 1 0 73 chain 5721 chr4 191154276 + 35563043 35563115 L1MA7 2200 + 1414 1486 187913 72 chain 62249 chr4 191154276 + 35563129 35563817 L1PA3long 6157 - 0 689 51778 625 0 1 63 chain 34407 chr4 191154276 + 35579979 35580365 L1PA4 6152 + 5761 6152 77046 380 0 5 6 chain 19702 chr4 191154276 + 35596280 35596605 THE1B 368 - 29 368 128091 45 5 1 125 1 0 13 44 48 52 1 16 39 chain 5944 chr4 191154276 + 35597136 35597225 MER30 238 + 131 221 185741 54 7 8 28 chain 129227 chr4 191154276 + 35607124 35608529 L1PA2 6032 - 4 1408 28259 724 1 0 680 chain 38952 chr4 191154276 + 35633943 35634383 L1P1 4361 - 663 1105 70675 250 0 2 190 chain 213795 chr4 191154276 + 35634383 35636800 L1PA4 6152 + 3718 6151 18240 587 1 0 595 0 11 393 0 4 264 5 7 424 0 1 116 1 0 31 chain 43533 chr4 191154276 + 35650407 35650956 MLT2A2 560 + 0 560 64766 397 3 14 149 chain 13309 chr4 191154276 + 35652141 35652309 L1P1 4361 - 20 186 147050 12 2 1 23 1 0 130 chain 34074 chr4 191154276 + 35652309 35652698 L1PA5 6144 + 5755 6144 77506 389 chain 14593 chr4 191154276 + 35660948 35661118 L1PA5 6144 - 9 179 142617 170 chain 8704 chr4 191154276 + 35665008 35665111 L1PA7 6471 - 25 128 167174 103 chain 526164 chr4 191154276 + 35678717 35684950 L1PA3long 6157 - 249 6151 4573 420 0 4 166 1 2 2442 0 1 773 6 7 246 323 0 132 0 4 469 1 0 201 0 1 159 0 1 370 21 0 411 0 1 92 chain 36668 chr4 191154276 + 35716054 35716460 L1PA3long 6157 - 0 407 74003 258 0 1 148 chain 3258 chr4 191154276 + 35726530 35726585 L1MC1 2226 - 37 90 219799 6 1 0 30 2 1 16 chain 51263 chr4 191154276 + 35802742 35803499 LTR12_ 688 - 0 688 58148 157 103 0 79 15 0 282 3 52 118 chain 7030 chr4 191154276 + 35802918 35803002 LTR12_ 688 - 175 260 156351 59 4 5 21 chain 12019 chr4 191154276 + 35822263 35822410 L1PA7 6471 - 4 148 152122 8 3 0 136 chain 218348 chr4 191154276 + 35831057 35833489 L1PA3long 6157 - 0 2751 17982 609 0 1 381 0 314 1223 0 4 219 chain 67452 chr4 191154276 + 35833492 35834235 L1PA3long 6157 + 2660 3403 49468 743 chain 371500 chr4 191154276 + 35861523 35866170 HERV9-int 5642 - 934 5630 11041 75 2 0 11 0 1 610 1 3 182 1 0 4 0 1 33 2 0 768 0 1 65 0 7 142 0 1 31 0 3 23 10 11 351 0 3 345 44 0 918 13 5 10 0 1 57 4 7 5 3 0 44 0 86 56 2 0 108 2 8 16 6 0 113 8 6 59 1 0 157 1 5 364 chain 10115 chr4 191154276 + 35866644 35866901 MSTB1-int 1597 + 890 1103 160014 101 124 80 32 chain 22049 chr4 191154276 + 35910969 35911303 THE1B 368 + 0 358 120025 44 0 15 113 1 0 23 3 0 6 29 42 115 chain 23634 chr4 191154276 + 35951944 35952272 THE1D-int 1627 - 1294 1627 112398 24 0 6 5 6 0 88 3 4 40 1 0 106 0 2 24 0 1 19 0 2 12 chain 19255 chr4 191154276 + 35959654 35959891 THE1B-int 1605 + 1367 1605 129367 165 1 2 71 chain 7692 chr4 191154276 + 35960415 35960528 THE1C 375 + 262 374 172982 80 7 6 26 chain 27743 chr4 191154276 + 35986664 35987469 L1MA2 4263 + 3608 4095 93889 50 333 12 74 1 0 41 1 0 4 19 17 20 1 2 130 18 33 67 7 0 11 2 0 26 chain 29719 chr4 191154276 + 36003755 36004068 AluYb8 318 - 5 318 85766 313 chain 4426 chr4 191154276 + 36025526 36025577 L1PA3long 6157 - 247 299 201646 4 0 1 47 chain 20636 chr4 191154276 + 36064835 36065072 L1PA6 6164 + 5910 6147 125167 237 chain 24980 chr4 191154276 + 36073321 36073590 L1PA2 6032 - 0 269 104908 269 chain 44138 chr4 191154276 + 36172801 36173301 L1PA4 6152 + 5650 6152 64030 494 0 2 6 chain 69045 chr4 191154276 + 36288620 36289714 L1PB1 5432 - 9 1065 48789 5 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 16 6 6 2 0 15 1 0 45 16 14 54 2 0 9 5 1 14 1 0 7 1 0 22 30 17 13 0 3 266 10 12 183 8 6 148 8 12 88 chain 22123 chr4 191154276 + 36311492 36311791 L1PA16 3655 - 72 370 119687 5 3 0 62 0 4 221 2 0 6 chain 4299 chr4 191154276 + 36364938 36364985 MADE1 96 - 4 51 203218 47 chain 483847 chr4 191154276 + 36378690 36384256 L1PA5 6144 + 565 6144 7594 553 18 19 572 1 0 17 0 4 211 6 4 478 0 4 743 1 0 1171 0 4 283 1 0 669 0 4 509 0 1 333 chain 26350 chr4 191154276 + 36409597 36409905 AluSp 311 - 2 310 98616 308 chain 76010 chr4 191154276 + 36413527 36414372 L1PA4 6152 + 5302 6152 45473 839 0 5 6 chain 3513 chr4 191154276 + 36422451 36422491 MADE1 96 + 56 96 215164 40 chain 494229 chr4 191154276 + 36435717 36441870 L1PA6 6164 - 3 6164 7159 662 5 6 100 0 2 1172 9 7 104 0 2 216 25 16 350 0 1 255 0 3 12 0 14 12 1 0 26 0 3 214 0 1 52 0 1 599 20 7 236 4 5 112 8 1 428 13 14 724 0 17 218 1 0 120 9 1 184 25 27 237 chain 142817 chr4 191154276 + 36443926 36445604 HERV17-int 4347 - 0 1659 25682 331 31 6 590 0 5 248 0 1 478 chain 30191 chr4 191154276 + 36457112 36457449 L1PA4 6152 - 1120 1457 83991 337 chain 101580 chr4 191154276 + 36457449 36458586 L1PA4 6152 + 5012 6151 36375 307 1 2 604 0 1 225 chain 25376 chr4 191154276 + 36459686 36459964 AluYa5 310 - 2 276 102800 185 4 0 89 chain 46371 chr4 191154276 + 36513009 36513563 L1PA7 6471 + 5913 6468 61708 492 4 9 47 4 0 7 chain 16042 chr4 191154276 + 36546309 36546605 MER1A 529 - 0 279 138238 49 77 56 157 0 4 13 chain 51816 chr4 191154276 + 36552760 36553398 PABL_A 660 - 0 659 57744 170 1 0 160 0 6 197 1 0 37 0 9 46 0 8 26 chain 397045 chr4 191154276 + 36564743 36570007 L1PB1 5432 - 151 5413 10196 44 22 20 50 2 0 7 4 0 14 1 0 8 1 0 25 1 0 8 3 2 50 19 19 408 5 0 670 0 1 23 13 23 175 4 0 7 0 6 137 0 1 4 1 0 298 0 2 73 4 6 574 0 5 6 5 0 577 81 83 246 1 2 5 1 0 299 6 0 15 1 2 140 0 4 265 1 2 312 1 0 237 1 0 27 2 0 380 chain 28343 chr4 191154276 + 36577090 36577436 L1PA8 5853 - 374 732 91787 210 0 12 136 chain 17135 chr4 191154276 + 36577437 36577703 L1PA8 5853 + 5583 5853 135218 25 2 0 70 2 1 8 0 6 6 6 0 40 3 2 19 1 9 84 chain 8673 chr4 191154276 + 36587819 36587929 THE1B 368 + 0 108 167342 13 2 0 95 chain 94054 chr4 191154276 + 36590898 36592186 L1PA11 4918 - 351 1628 38335 13 1 0 15 31 22 9 4 0 20 2 1 13 2 0 58 11 9 13 2 1 56 0 3 26 2 0 12 0 2 189 0 6 809 chain 20651 chr4 191154276 + 36602033 36602277 L1PA4 6152 - 1 252 125130 141 2 9 101 chain 51434 chr4 191154276 + 36602277 36602853 L1PA4 6152 + 5303 5881 58015 136 0 2 440 chain 26623 chr4 191154276 + 36605480 36605791 L1PA7 6471 - 2 313 97582 311 chain 48850 chr4 191154276 + 36608199 36608742 L1PA3long 6157 + 5615 6157 59839 54 1 0 488 chain 161686 chr4 191154276 + 36613628 36615746 HERVL-int 5654 + 0 5654 23103 19 0 1 89 1 0 121 0 3 92 0 1 152 0 3 174 2 0 205 1 2 184 3 1 268 28 42 57 4 3523 248 1 0 469 chain 22347 chr4 191154276 + 36616957 36617312 THE1D 372 - 0 372 118715 162 44 50 63 22 33 64 chain 18334 chr4 191154276 + 36617320 36617535 THE1D-int 1627 - 9 226 131978 20 0 3 82 1 0 112 chain 41096 chr4 191154276 + 36627537 36628033 LTR3B_ 500 + 0 500 67769 42 1 0 171 0 1 85 0 1 42 0 3 155 chain 10981 chr4 191154276 + 36628588 36628734 THE1B 368 - 207 368 156269 97 5 20 44 chain 49069 chr4 191154276 + 36633612 36634262 PABL_A 660 + 0 652 59698 51 0 4 26 17 9 21 1 2 137 5 9 318 0 1 74 chain 486398 chr4 191154276 + 36657680 36663595 L1PA6 6164 + 29 5944 7505 199 0 1 90 1 0 91 13 13 144 1 0 383 0 2 196 8 12 163 10 9 367 2 0 29 1 0 106 1 2 38 1 0 456 1 2 851 9 8 110 4 5 397 1 0 1027 1 0 582 0 3 217 0 1 4 2 1 52 4 0 257 0 1 96 chain 42461 chr4 191154276 + 36696945 36697404 L1PA3long 6157 + 5698 6157 66058 459 chain 30192 chr4 191154276 + 36716094 36716490 MLT2A1 477 - 74 475 84222 79 1 0 150 1 5 28 1 2 128 0 1 8 chain 436757 chr4 191154276 + 36716490 36722060 HERVL-int 5654 - 0 5654 9139 223 0 1 25 3 0 184 2 1 77 1 4 135 0 1 115 0 22 345 2 1 58 0 1 90 0 4 524 1 0 398 4 0 122 0 36 193 11 8 6 0 3 274 5 7 116 0 1 638 0 3 86 18 21 24 0 2 32 5 6 334 0 7 947 5 4 17 0 1 139 0 2 112 0 1 241 0 4 58 chain 4955 chr4 191154276 + 36722312 36722379 MLT2A1 477 - 222 303 195650 19 0 14 48 chain 13659 chr4 191154276 + 36722380 36722588 MLT2A1 477 - 308 477 145748 28 37 0 72 3 1 68 chain 23890 chr4 191154276 + 36750655 36751071 L1PA15-16 3068 + 568 963 110960 58 78 66 83 0 1 122 1 0 49 9 0 16 chain 39028 chr4 191154276 + 36755422 36755886 L1PA4 6152 + 5680 6143 70698 299 16 15 149 chain 11231 chr4 191154276 + 36794912 36795097 L1PA13 3608 - 147 350 155308 13 2 0 5 2 0 47 9 36 6 2 0 19 1 0 62 2 0 15 chain 29273 chr4 191154276 + 36802379 36802786 MLT2A1 477 - 0 477 87682 20 0 63 179 11 13 23 6 10 26 0 1 142 chain 240570 chr4 191154276 + 36804149 36806995 L1PA6 6164 - 15 2877 16738 131 5 6 9 2 1 572 0 1 38 0 7 692 0 2 269 0 3 401 1 2 387 1 3 338 chain 30364 chr4 191154276 + 36841913 36842249 L1PA3long 6157 - 469 806 83752 301 0 1 35 chain 41460 chr4 191154276 + 36842249 36842707 L1PA3long 6157 + 5691 6149 67336 458 chain 30558 chr4 191154276 + 36842771 36843089 AluYb8 318 - 0 318 83311 318 chain 463601 chr4 191154276 + 36856440 36862336 L1PA6 6164 + 582 6157 8268 109 7 11 161 3 4 83 14 14 376 0 3 109 2 1 382 2 0 569 0 1 655 3 4 125 0 1 338 1 2 953 5 0 73 3 5 598 0 4 140 5 8 4 0 1 32 322 0 458 13 0 351 chain 26107 chr4 191154276 + 36881478 36881751 AluYb8 318 + 34 307 99589 273 chain 138562 chr4 191154276 + 36899486 36901442 HUERS-P3b-int 2065 + 15 2027 26384 79 3 0 68 1 0 4 1 2 144 1 0 4 6 8 134 4 13 5 3 0 102 3 0 109 4 0 70 18 17 33 1 3 18 2 1 10 12 11 370 1 2 82 1 0 138 3 1 28 1 0 44 4 2 76 0 70 29 1 2 34 3 1 65 5 7 14 11 8 61 13 9 48 1 0 33 0 2 51 chain 26117 chr4 191154276 + 36902176 36902598 LTR9B 643 + 134 559 99539 46 26 28 17 0 1 110 0 1 72 53 52 98 chain 37338 chr4 191154276 + 36907348 36907809 LTR2 463 + 0 463 73040 220 0 1 141 12 13 88 chain 28869 chr4 191154276 + 36908105 36908413 AluY 311 + 2 311 89587 130 0 1 178 chain 397873 chr4 191154276 + 36909682 36914515 Harlequin-int 5206 + 370 5206 10176 47 5 6 59 3 0 125 4 5 399 1 0 29 0 1 99 4 0 34 22 0 33 4 0 85 2 1 267 1 0 473 0 2 217 9 10 71 1 0 670 0 2 194 0 2 115 0 3 204 0 44 115 6 0 537 24 25 10 24 11 357 0 1 583 chain 37769 chr4 191154276 + 36914515 36914977 LTR2 463 + 0 463 72462 362 12 13 88 chain 3225 chr4 191154276 + 36917940 36917979 MER67C 710 - 598 640 220511 32 0 3 7 chain 521803 chr4 191154276 + 36936946 36943366 L1PA7 6471 + 0 6465 4985 182 0 1 109 0 1 110 0 1 215 0 4 398 0 1 1290 12 13 311 2 0 184 0 1 51 14 18 356 0 1 256 1 0 46 15 19 17 0 2 412 3 5 469 1 5 75 4 3 69 1 0 117 0 23 190 1 0 240 0 1 346 2 1 79 3 5 313 1 2 339 0 1 177 3 0 6 chain 97611 chr4 191154276 + 36951148 36952621 THE1C-int 1605 - 12 1568 37394 270 23 26 215 12 9 5 0 3 305 79 88 96 8 9 51 17 21 38 8 15 93 8 7 94 4 10 61 0 54 86 chain 55823 chr4 191154276 + 36969953 36970676 MER4A 717 - 0 717 55235 53 0 1 109 1 0 23 0 1 407 5 0 80 2 0 43 chain 27358 chr4 191154276 + 36972282 36972708 MLT2A1 477 - 0 477 95086 21 2 1 19 1 0 9 0 44 57 4 7 107 12 11 28 7 11 21 1 2 89 7 9 41 chain 182013 chr4 191154276 + 36976146 36978167 L1PA3long 6157 - 0 2042 20782 19 0 1 79 0 11 223 0 1 583 0 1 213 0 7 320 0 1 63 1 0 520 chain 103571 chr4 191154276 + 36978167 36979313 L1PA3long 6157 + 2961 4108 35813 209 0 1 937 chain 23537 chr4 191154276 + 36986668 36986962 AluSq 315 + 11 304 112920 125 1 0 168 chain 3380 chr4 191154276 + 36986975 36987017 L1MB3 1562 + 1514 1555 217468 9 1 0 32 chain 37689 chr4 191154276 + 36989436 36989868 L1PA4 6152 - 1 433 72568 17 1 0 137 0 1 277 chain 25610 chr4 191154276 + 37003328 37003657 MER48 407 + 8 340 101679 6 0 2 265 1 0 11 0 2 46 chain 29082 chr4 191154276 + 37007308 37007614 AluYb8 318 + 0 306 88628 306 chain 24625 chr4 191154276 + 37007614 37007917 THE1B-int 1605 + 1295 1598 106859 303 chain 50519 chr4 191154276 + 37012600 37013492 L1MA1 4479 + 2418 4190 58636 181 4 0 7 6 909 147 0 1 4 0 1 6 0 2 24 37 35 4 1 0 16 1 0 16 0 2 56 1 0 17 2 0 12 4 1 32 9 11 39 0 1 5 1 0 5 3 0 42 0 1 4 1 0 79 1 0 27 2 0 19 37 32 16 6 0 18 chain 21552 chr4 191154276 + 37014641 37014888 L1PA5 6144 - 2 258 121957 66 0 9 181 chain 51349 chr4 191154276 + 37030128 37030769 L1PA7 6471 + 4421 5053 58067 255 0 4 269 6 0 29 8 1 74 chain 33998 chr4 191154276 + 37030770 37031163 L1PA7 6471 + 5076 5469 77619 393 chain 12094 chr4 191154276 + 37031163 37031310 L1PA7 6471 + 5474 5621 151819 147 chain 72269 chr4 191154276 + 37031311 37032165 L1PA7 6471 + 5621 6468 47347 840 7 0 7 chain 13714 chr4 191154276 + 37038912 37039081 THE1B 368 - 199 368 145561 169 chain 33179 chr4 191154276 + 37055388 37055766 L1PA3long 6157 - 2 380 78941 378 chain 4723 chr4 191154276 + 37061321 37061394 MADE1 96 - 8 91 198241 29 1 0 4 1 12 38 chain 9092 chr4 191154276 + 37080345 37080529 L1PB1 5432 - 28 194 165111 13 1 0 18 6 5 37 1 0 4 2 0 30 17 5 11 1 0 43 chain 105886 chr4 191154276 + 37082962 37084268 L1PA8 5853 + 4556 5853 35287 176 0 1 19 10 8 249 2 0 555 1 0 44 2 0 71 1 0 8 0 1 4 7 6 42 2 1 19 1 0 93 chain 120555 chr4 191154276 + 37104680 37106021 L1P1 4361 - 122 1462 30853 89 1 0 1251 chain 114820 chr4 191154276 + 37106021 37107275 L1PA2 6032 + 4780 6028 32839 745 2 0 455 4 0 48 chain 28668 chr4 191154276 + 37159472 37159913 MER51B 395 + 2 395 90460 57 3 5 83 49 0 81 2 1 166 chain 26707 chr4 191154276 + 37191654 37192010 THE1B 368 - 0 368 97298 176 3 1 19 7 6 111 0 15 40 chain 18986 chr4 191154276 + 37204650 37205004 THE1B 368 - 0 368 130140 175 35 26 32 68 91 44 chain 121052 chr4 191154276 + 37205015 37206585 THE1B-int 1605 - 5 1605 30676 5 0 2 521 5 6 585 24 49 415 0 2 15 chain 23412 chr4 191154276 + 37206585 37206936 THE1B 368 - 0 366 113583 190 10 9 23 27 28 59 0 15 42 chain 7484 chr4 191154276 + 37209755 37209896 THE1B 368 - 0 125 174244 61 36 20 44 chain 13145 chr4 191154276 + 37209931 37210114 THE1B 368 - 170 368 147665 26 1 0 62 5 6 39 6 21 44 chain 29039 chr4 191154276 + 37224758 37225063 AluYb8 318 - 13 318 88812 305 chain 27562 chr4 191154276 + 37229399 37229737 THE1A 353 - 15 353 94462 37 0 1 190 1 0 110 chain 336182 chr4 191154276 + 37274888 37278760 L1PA4 6152 + 2322 6152 11992 491 0 1 1143 0 2 397 0 4 399 22 0 574 0 8 299 56 12 134 0 2 296 0 2 55 0 5 6 chain 33601 chr4 191154276 + 37289441 37289879 L1PA8A 6298 + 5836 6275 78236 24 0 3 312 13 20 74 9 0 6 chain 10161 chr4 191154276 + 37298020 37298205 L1PB3 3668 + 3398 3563 159793 76 27 11 11 1 0 7 1 0 25 3 1 34 chain 269601 chr4 191154276 + 37312257 37315234 L1PA3long 6157 - 0 2985 15202 1037 0 6 1216 0 2 724 chain 40503 chr4 191154276 + 37329878 37330346 L1PA7 6471 - 10 479 68586 154 0 1 314 chain 466834 chr4 191154276 + 37350325 37356193 L1PA7 6471 - 19 5737 8157 220 0 1 528 2 3 31 2 0 54 2 0 616 0 3 13 1 0 153 0 1 657 1 5 247 0 1 332 1 4 247 1 0 233 2 1 145 191 8 201 1 4 93 7 14 419 1 2 51 0 1 91 4 12 114 0 1 106 1 0 80 0 1 373 5 6 86 9 13 290 2 1 196 0 1 59 chain 7316 chr4 191154276 + 37353823 37353950 L1PA7 6471 - 3525 3652 175322 71 31 31 25 chain 22058 chr4 191154276 + 37399846 37400169 L1PA8 5853 + 5468 5783 119981 96 1 0 44 2 0 70 2 1 11 2 0 50 6 5 10 6 5 23 chain 40267 chr4 191154276 + 37408010 37408852 L1PA8 5853 + 5294 5853 68918 80 5 0 11 1 3 133 296 3 40 1 0 45 2 0 57 0 16 8 2 0 54 1 0 16 2 1 48 0 4 40 chain 515968 chr4 191154276 + 37409372 37415750 L1PA7 6471 + 15 6467 5576 210 0 15 12 21 14 139 1 0 7 1 0 54 1 0 111 3 0 165 10 15 86 15 15 382 0 4 9 0 19 487 0 1 89 0 3 600 0 3 238 16 20 78 0 1 97 6 10 118 6 7 200 1 2 278 0 7 38 0 4 1121 0 4 306 16 18 14 1 0 287 0 10 307 2 1 22 0 1 823 chain 36628 chr4 191154276 + 37418042 37418719 L1PB1 5432 + 4782 5422 74059 191 1 2 119 22 23 21 1 0 8 1 0 6 22 16 52 2 1 10 2 5 44 1 0 20 3 0 12 9 0 8 46 43 7 1 0 22 20 4 26 chain 20007 chr4 191154276 + 37462871 37463155 L1PA10 4194 - 33 311 127123 10 2 1 31 7 4 33 2 0 199 chain 27524 chr4 191154276 + 37482141 37482562 LTR19A 502 - 76 502 94589 12 11 12 89 1 2 35 1 6 5 1 0 24 6 5 14 2 3 16 6 7 5 2 0 191 chain 17543 chr4 191154276 + 37482853 37483115 AluSc 308 + 52 308 134146 71 0 3 5 8 0 8 8 10 5 2 0 101 1 0 16 0 1 6 1 0 30 chain 5900 chr4 191154276 + 37483122 37483192 MLT1B 390 - 91 161 186189 70 chain 8575 chr4 191154276 + 37484502 37484597 THE1C-int 1605 + 1510 1605 167879 95 chain 26199 chr4 191154276 + 37484597 37484970 THE1C 375 + 0 373 99208 109 5 6 64 0 2 5 15 13 151 1 0 23 chain 19084 chr4 191154276 + 37485772 37486130 THE1B 368 - 0 368 129867 56 7 6 36 31 42 14 2 10 12 18 7 7 0 2 53 15 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1 57 4 5 11 10 7 7 1 0 101 2 0 19 1 0 71 1 0 16 2 0 25 1 0 59 4 7 120 1 0 15 8 4 84 0 4 28 18 16 66 5 0 48 4 0 12 1 0 57 3 0 36 2 0 137 10 12 27 2 0 116 1 0 9 1 0 53 1 0 32 3 1 103 2 1 71 2 0 11 0 4 56 4 7 62 1 0 134 4 0 103 326 20 115 0 2 125 5 6 71 137 12 136 2 0 28 0 2 423 21 22 18 0 1 21 chain 26366 chr4 191154276 + 37533242 37533537 AluYk4 311 + 10 305 98554 295 chain 105138 chr4 191154276 + 37549626 37550964 Harlequin-int 5206 + 125 2256 35467 7 0 1 2 2 0 12 3 0 141 0 1 17 0 1 51 0 5 36 0 4 79 5 0 183 4 0 221 0 778 39 0 5 112 0 5 129 5 11 13 1 2 276 chain 18313 chr4 191154276 + 37555595 37555883 THE1B 368 + 0 306 132045 69 0 14 86 1 0 21 18 25 13 20 18 60 chain 103332 chr4 191154276 + 37560111 37561226 L1PA3long 6157 + 5041 6157 35912 783 0 1 332 chain 33531 chr4 191154276 + 37567350 37567790 MLT2A1 477 + 0 477 78349 169 0 4 87 0 1 117 24 56 43 chain 28728 chr4 191154276 + 37573673 37573987 AluYa5 310 - 0 310 90218 187 4 0 123 chain 158745 chr4 191154276 + 37669823 37671663 SVA_D 2077 + 2 2066 23492 35 0 18 635 0 40 96 0 122 39 0 51 175 4 0 6 47 0 133 0 49 363 5 0 302 chain 2865 chr4 191154276 + 37670813 37670860 SVA_D 2077 + 1043 1090 95640 47 chain 24663 chr4 191154276 + 37682281 37682575 AluY 311 + 13 304 106649 118 3 0 173 chain 20689 chr4 191154276 + 37699683 37699960 AluSx4 309 + 11 288 125007 22 0 1 107 17 16 131 chain 8068 chr4 191154276 + 37754105 37754202 MER41B 635 + 0 97 170658 97 chain 19097 chr4 191154276 + 37758404 37758776 THE1D 372 + 0 372 129823 54 33 24 29 5 6 46 30 32 11 25 30 6 0 1 133 chain 27276 chr4 191154276 + 37787906 37788261 THE1B 368 + 0 368 95350 44 0 15 126 2 1 8 1 0 174 chain 120443 chr4 191154276 + 37788261 37789836 THE1B-int 1605 + 0 1600 30891 282 0 2 7 0 2 133 0 25 34 0 1 323 31 16 157 1 0 102 8 15 43 0 4 454 chain 47317 chr4 191154276 + 37790676 37791410 LTR8 732 - 0 732 60957 114 4 1 130 75 73 218 5 6 34 7 0 7 8 14 98 0 3 34 chain 20215 chr4 191154276 + 37792555 37792897 THE1B 368 + 0 349 126484 47 0 9 8 9 0 99 6 5 33 40 48 100 chain 114445 chr4 191154276 + 37792916 37794484 THE1B-int 1605 + 0 1605 32960 155 8 0 73 0 1 146 0 1 53 1 26 190 7 11 37 5 6 175 4 5 76 19 30 119 8 15 6 7 0 271 5 6 203 chain 127312 chr4 191154276 + 37821430 37822931 SVA_C 1631 + 0 1631 28739 10 0 11 627 7 11 22 1 38 88 5 4 13 2 3 45 6 1 30 6 93 46 0 1 281 6 1 306 chain 42337 chr4 191154276 + 37827202 37827693 LTR2C 499 + 8 499 66220 17 0 3 309 4 0 103 0 1 58 chain 16351 chr4 191154276 + 37856648 37857029 L1MA8 2339 - 77 405 137338 5 1 0 24 2 0 35 14 8 24 88 49 16 17 15 77 1 0 52 2 0 23 chain 6042 chr4 191154276 + 37871988 37872060 L1MA9 1812 + 1249 1321 184871 72 chain 25270 chr4 191154276 + 37881370 37881667 AluY 311 + 0 300 103367 24 1 3 105 0 1 167 chain 17987 chr4 191154276 + 37912164 37912512 L1MA3 4352 + 3977 4302 132897 115 38 12 9 1 0 5 0 1 27 15 18 31 1 5 60 2 0 14 16 14 14 chain 46033 chr4 191154276 + 37924579 37925111 L1PA7 6471 - 1 536 62010 251 0 1 17 0 1 159 0 1 105 chain 541927 chr4 191154276 + 37940157 37946594 L1PA5 6144 - 3 6141 2520 163 0 6 671 0 4 1697 0 1 1086 0 1 206 1 0 126 0 6 36 317 0 795 0 1 1339 chain 2665 chr4 191154276 + 37949656 37949684 MIR 256 - 150 178 230819 28 chain 15361 chr4 191154276 + 37964791 37964988 MSTA 426 - 1 197 140310 174 1 0 22 chain 13992 chr4 191154276 + 37968255 37968431 L1PA6 6164 - 2 194 144603 6 2 0 56 0 18 112 chain 78505 chr4 191154276 + 37976563 37977571 LTR13 1007 - 0 1007 44269 31 4 3 151 6 7 116 1 7 6 6 0 25 0 1 274 5 6 77 1 0 230 2 0 73 chain 20897 chr4 191154276 + 38022689 38022991 THE1B 368 - 61 368 124288 64 2 1 12 1 0 16 0 4 9 8 11 21 1 0 37 1 2 130 chain 6874 chr4 191154276 + 38029631 38029724 MER30 238 - 0 100 178403 48 3 0 25 0 10 17 chain 7705 chr4 191154276 + 38065642 38065736 L1MB8 1703 - 116 210 172898 94 chain 7641 chr4 191154276 + 38071510 38071604 MER30 238 + 138 238 173276 14 0 6 80 chain 25325 chr4 191154276 + 38077665 38078024 THE1C 375 - 0 370 103097 25 1 0 45 0 5 69 4 7 34 1 0 12 0 1 86 6 7 19 0 2 38 0 1 19 chain 24065 chr4 191154276 + 38103596 38103869 L1PA4 6152 + 5873 6146 109957 273 chain 7763 chr4 191154276 + 38150106 38150261 MER20 218 + 0 145 172517 28 6 7 4 1 0 45 25 16 25 1 0 20 chain 4297 chr4 191154276 + 38176907 38176957 MER117 194 + 39 89 203264 50 chain 3402 chr4 191154276 + 38181081 38181144 MER96B 391 + 66 135 217051 37 1 6 7 3 0 7 0 4 8 chain 5873 chr4 191154276 + 38188475 38188546 MLT1C 463 - 360 431 186440 71 chain 30554 chr4 191154276 + 38189322 38189689 THE1B 368 + 0 368 83333 169 1 0 29 0 2 168 chain 13912 chr4 191154276 + 38247533 38247767 MER47A 366 + 69 317 144879 16 1 6 46 26 25 78 5 0 9 4 19 49 chain 3438 chr4 191154276 + 38259312 38259351 7SLRNA 320 - 146 185 216440 39 chain 44265 chr4 191154276 + 38260880 38261433 MER41A 554 - 0 554 63864 459 7 8 87 chain 17912 chr4 191154276 + 38296234 38296477 L1P1 4361 + 4100 4341 133074 50 1 0 14 5 6 135 1 0 23 2 1 12 chain 62171 chr4 191154276 + 38306268 38307122 LTR12C 1709 + 562 1709 51819 92 0 119 64 1 0 75 0 207 96 20 13 253 30 7 53 1 0 71 14 13 84 chain 42051 chr4 191154276 + 38319063 38319910 MER41A 554 + 0 554 66556 178 4 0 35 13 21 196 297 0 124 chain 2489 chr4 191154276 + 38325666 38325848 LTR12C 1709 - 144 192 233232 18 140 6 24 chain 4136 chr4 191154276 + 38337397 38337446 MSTC 436 + 2 51 205412 49 chain 79502 chr4 191154276 + 38340286 38341347 MER11A 1151 - 7 1151 43823 32 1 0 21 7 6 87 8 7 98 1 59 19 0 1 67 0 4 37 3 4 11 6 9 319 0 1 57 0 11 66 1 0 141 0 8 79 chain 20890 chr4 191154276 + 38342517 38342787 MER1A 529 + 135 391 124319 226 14 0 30 chain 24275 chr4 191154276 + 38349557 38349914 THE1B 368 - 7 368 108811 49 7 6 33 0 1 5 1 0 25 1 0 10 1 0 18 0 1 4 1 0 4 0 5 8 2 0 23 1 0 130 1 6 33 chain 13208 chr4 191154276 + 38368878 38369085 MER30 238 - 3 238 147430 4 1 0 32 3 0 66 3 34 60 8 9 30 chain 21050 chr4 191154276 + 38390552 38390902 THE1B 368 - 0 368 123731 75 1 0 84 13 15 21 24 22 9 0 4 55 24 39 44 chain 12323 chr4 191154276 + 38395064 38395242 MSTA-int 1630 + 1437 1622 150924 79 0 6 64 11 12 24 chain 8001 chr4 191154276 + 38400959 38401217 L1PA16 3655 - 36 270 171056 16 71 45 12 22 26 29 19 19 61 3 1 25 chain 21319 chr4 191154276 + 38417749 38418003 AluSp 311 + 5 276 122804 81 0 1 127 0 16 46 chain 118536 chr4 191154276 + 38420349 38421909 THE1B-int 1605 - 6 1605 31605 199 0 1 436 14 15 10 0 1 9 9 17 188 0 2 6 8 6 253 1 26 302 8 0 9 6 14 34 0 3 68 chain 27738 chr4 191154276 + 38421909 38422278 THE1B 368 - 0 368 93911 78 3 0 122 1 0 119 5 10 23 3 1 15 chain 5340 chr4 191154276 + 38424186 38424246 MSTD 398 - 336 396 191640 60 chain 467468 chr4 191154276 + 38433820 38439668 L1PA8 5853 - 0 5803 8130 71 0 3 19 1 0 19 2 1 44 20 18 67 3 1 46 6 5 548 0 2 117 1 4 554 2 0 536 0 1 925 5 6 59 4 0 718 2 4 58 4 5 495 1 0 819 6 10 34 1 2 135 37 39 180 18 6 194 49 13 11 7 6 6 2 0 22 chain 100043 chr4 191154276 + 38440316 38441427 L1PA3long 6157 + 5045 6157 36766 261 0 1 850 chain 540121 chr4 191154276 + 38444419 38450547 L1PA4 6152 - 9 6152 2803 835 0 4 130 0 1 167 8 0 223 0 1 117 0 1 739 1 2 2487 1 2 1278 0 14 142 chain 524769 chr4 191154276 + 38478114 38484163 L1PA5 6144 + 3 6139 4704 930 0 2 131 0 2 167 1 2 509 0 1 253 0 1 378 8 12 305 0 5 51 0 1 1109 0 18 467 0 4 640 8 0 178 0 1 730 0 55 184 chain 28212 chr4 191154276 + 38486739 38487049 AluYb8 318 - 9 318 92265 177 1 0 132 chain 21882 chr4 191154276 + 38522081 38522428 THE1B 368 + 0 367 120704 44 5 20 17 5 1 90 1 0 26 26 43 6 7 0 120 chain 13996 chr4 191154276 + 38533478 38533681 L1PA8 5853 - 0 199 144589 93 1 0 16 16 15 41 8 6 28 chain 38497 chr4 191154276 + 38535224 38535769 MLT2A2 560 + 0 560 71442 11 4 8 84 1 0 29 1 2 34 2 4 158 6 7 69 0 11 81 1 0 11 3 1 50 chain 13393 chr4 191154276 + 38555080 38555245 THE1D 372 - 206 372 146747 43 0 1 122 chain 119285 chr4 191154276 + 38555986 38557736 L1PB1 5432 - 9 1692 31298 5 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 4 4 2 18 14 0 8 0 3 14 13 13 34 1 0 17 1 0 50 19 13 12 1 0 6 1 0 21 54 22 285 13 13 167 7 1 79 1 0 203 0 9 140 0 1 60 0 1 137 42 33 226 chain 5895 chr4 191154276 + 38587545 38587627 MLT1D 503 - 28 110 186233 27 0 1 21 1 0 33 chain 18464 chr4 191154276 + 38610434 38610632 AluYa5 310 + 110 309 131601 21 0 1 177 chain 113755 chr4 191154276 + 38628343 38629723 LTR12C 1709 + 0 1709 33160 262 0 2 386 0 278 143 0 47 106 0 4 21 1 0 363 14 13 84 chain 10754 chr4 191154276 + 38655638 38655763 L1PA5 6144 - 1 125 157184 25 1 0 99 chain 7844 chr4 191154276 + 38715372 38715464 L1PA5 6144 - 3 96 172048 39 0 1 53 chain 27211 chr4 191154276 + 38717524 38717828 AluYa5 310 - 3 306 95558 175 1 0 128 chain 25090 chr4 191154276 + 38721764 38722070 AluSg7 307 - 0 307 104349 175 0 1 131 chain 2386 chr4 191154276 + 38735286 38735325 HAL1-2a_MD 234 - 90 228 234342 15 1 100 23 chain 16084 chr4 191154276 + 38739637 38739816 L1PA5 6144 + 5721 5900 138101 179 chain 19398 chr4 191154276 + 38739821 38740058 L1PA5 6144 + 5909 6143 128955 219 3 0 15 chain 2943 chr4 191154276 + 38772767 38772803 MLT2A2 560 + 520 560 226269 30 0 4 6 chain 3137 chr4 191154276 + 38774049 38774086 MADE1 96 - 59 96 222229 37 chain 20010 chr4 191154276 + 38778459 38778730 THE1B 368 - 76 351 127112 50 1 0 12 1 0 4 9 13 12 0 3 29 1 0 152 chain 77706 chr4 191154276 + 38779131 38780051 L1PA7 6471 + 5518 6458 44654 79 1 0 5 0 1 11 0 3 656 0 17 168 chain 5998 chr4 191154276 + 38804930 38805006 MER50 708 + 593 669 185258 76 chain 152742 chr4 191154276 + 38808487 38810307 SVA_D 2077 + 60 2064 24259 84 0 1 572 76 0 199 2 1 27 1 139 20 0 78 127 0 49 407 5 0 300 chain 3817 chr4 191154276 + 38823182 38823263 MER2B 336 + 241 323 210134 30 25 26 26 chain 22258 chr4 191154276 + 38824477 38824808 THE1B 368 - 12 359 119086 141 12 15 28 7 6 45 5 4 62 0 15 31 chain 535768 chr4 191154276 + 38848926 38855011 L1PA5 6144 + 0 6144 3484 211 0 1 940 1 4 26 0 1 511 0 1 413 0 1 345 0 41 210 4 12 1384 6 0 394 0 8 1363 0 1 277 chain 4130 chr4 191154276 + 38874356 38874521 MER58A 224 - 28 182 205509 30 8 0 10 85 82 32 chain 29659 chr4 191154276 + 38883651 38883962 AluYb8 318 + 0 311 86029 311 chain 6645 chr4 191154276 + 38897419 38897543 Tigger3a 397 - 176 350 180133 54 7 8 18 17 66 28 chain 28137 chr4 191154276 + 38918068 38918438 L1PA7 6471 + 6093 6467 92515 7 0 3 119 6 7 18 1 2 64 0 1 97 1 0 40 0 1 9 2 0 6 chain 24026 chr4 191154276 + 38919555 38919851 AluSp 311 + 0 288 110180 120 8 0 168 chain 23587 chr4 191154276 + 38943495 38943854 THE1B 368 - 0 368 112648 118 42 52 25 5 4 169 chain 16558 chr4 191154276 + 38963628 38963978 THE1B 368 + 0 368 136770 55 4 16 31 41 42 33 23 18 5 1 0 14 0 4 6 11 19 63 14 13 49 chain 11045 chr4 191154276 + 38969492 38969641 L1P5 443 - 113 262 156034 44 0 5 6 5 0 94 chain 3861 chr4 191154276 + 38984327 38984370 MLT2A2 560 + 517 560 209453 43 chain 132896 chr4 191154276 + 39003191 39004663 L1PA3long 6157 + 4684 6157 27445 1317 8 9 147 chain 18325 chr4 191154276 + 39017305 39017652 THE1B 368 + 0 368 132000 111 4 5 15 6 13 33 53 60 5 2 0 64 0 2 5 11 17 38 chain 25599 chr4 191154276 + 39031089 39031362 AluY 311 + 37 311 101732 95 0 1 178 chain 4282 chr4 191154276 + 39068357 39068409 MIR 256 - 38 91 203448 23 0 1 29 chain 29376 chr4 191154276 + 39078444 39080489 L1PB1 5432 + 4368 5406 87181 140 15 14 75 5 4 19 0 1 91 1544 557 11 1 0 16 1 0 4 2 0 10 9 0 16 3 1 5 1 0 14 5 3 21 1 0 22 1 0 8 0 1 5 chain 23722 chr4 191154276 + 39124142 39124459 AluY 311 + 0 306 111920 28 1 0 101 7 0 148 1 3 11 5 0 15 chain 44661 chr4 191154276 + 39131660 39132171 MER9a2 513 - 0 513 63421 203 0 2 308 chain 3267 chr4 191154276 + 39140962 39141081 L1MC1 2226 + 2013 2118 219635 30 55 43 17 3 1 14 chain 21644 chr4 191154276 + 39151031 39151336 L1PA8 5853 + 5541 5853 121599 21 1 0 47 3 1 29 0 10 30 1 0 8 2 1 17 4 0 39 1 0 16 1 0 15 0 8 70 chain 25660 chr4 191154276 + 39165689 39166045 THE1B 368 + 0 357 101447 82 12 6 81 1 0 136 6 14 38 chain 15666 chr4 191154276 + 39222231 39222408 AluSg7 307 - 110 288 139377 65 0 1 112 chain 18215 chr4 191154276 + 39230603 39230915 L1PB4 2604 - 36 344 132295 66 19 27 62 0 1 26 4 0 7 25 16 103 chain 24396 chr4 191154276 + 39242296 39242592 AluSx4 309 + 7 297 108101 111 6 0 179 chain 549448 chr4 191154276 + 39247987 39254137 L1PA4 6152 + 0 6150 1523 764 2 0 540 0 1 390 0 2 616 1 0 383 1 11 1090 11 0 754 1 0 414 2 0 339 0 4 842 chain 4140 chr4 191154276 + 39263044 39263090 MER30 238 - 2 48 205359 46 chain 125639 chr4 191154276 + 39297871 39299224 L1PA2 6032 - 0 1353 29203 1353 chain 10047 chr4 191154276 + 39299224 39299331 U6 107 - 0 107 160334 107 chain 41454 chr4 191154276 + 39300569 39301036 MER9a1 513 + 39 505 67344 8 1 0 458 chain 4230 chr4 191154276 + 39302817 39302879 L1MC1 2226 + 1983 2043 204166 12 3 1 47 chain 18215 chr4 191154276 + 39333488 39333829 THE1B 368 + 0 368 132296 18 6 5 21 34 51 74 1 0 29 35 45 21 0 2 102 chain 3855 chr4 191154276 + 39342027 39342072 LTR54 533 + 425 470 209506 45 chain 25767 chr4 191154276 + 39352593 39352900 AluY 311 + 5 310 101018 278 2 0 27 chain 5591 chr4 191154276 + 39360932 39361164 L1PB1 5432 + 5069 5281 136264 34 5 2 9 3 0 15 6 5 13 1 0 10 19 13 50 2 1 14 6 1 45 chain 24814 chr4 191154276 + 39361174 39361460 AluY 311 + 14 301 105807 118 0 1 168 chain 2916 chr4 191154276 + 39361506 39361627 L1PB1 5432 + 5308 5422 136264 19 23 19 24 1 0 21 1 0 13 1 0 18 chain 21830 chr4 191154276 + 39370855 39371146 Tigger4 2445 - 1913 2207 120900 122 0 1 23 12 14 134 chain 126076 chr4 191154276 + 39372132 39373685 THE1B-int 1605 + 16 1605 29074 266 0 2 144 5 30 69 0 1 136 0 7 575 0 1 358 chain 246052 chr4 191154276 + 39378748 39382550 L1MA2 4263 - 158 3658 16445 33 21 14 80 30 28 144 16 13 131 1 0 76 5 1 13 1 0 113 0 4 21 0 1 27 2 3 5 1 0 39 5 11 254 1 2 111 1 0 45 0 1 25 5 9 76 0 2 48 1 0 73 5 0 24 0 1 22 313 0 11 0 3 20 0 1 67 1 0 11 0 2 374 0 1 98 1 5 89 11 0 89 1 0 5 1 2 214 2 3 41 0 3 73 0 2 8 7 0 8 5 8 19 0 4 7 5 4 86 4 7 102 10 10 74 13 11 18 0 7 122 1 3 4 0 1 141 0 1 4 15 14 182 0 1 90 chain 10504 chr4 191154276 + 39382559 39382705 L1PA8 5853 - 93 236 158231 19 2 1 52 1 0 9 2 1 61 chain 3721 chr4 191154276 + 39506395 39506435 Tigger7 736 - 616 656 211632 40 chain 22280 chr4 191154276 + 39533185 39533516 THE1B 368 - 12 355 118997 113 34 42 26 4 3 127 0 5 27 chain 10645 chr4 191154276 + 39533699 39533834 THE1B 368 + 3 173 157621 39 0 36 90 1 0 5 chain 125980 chr4 191154276 + 39534193 39536286 THE1B-int 1605 + 0 1605 29109 368 200 1 60 315 27 199 1 0 950 chain 4638 chr4 191154276 + 39537181 39537238 THE1B 368 + 293 356 199214 31 0 6 26 chain 19937 chr4 191154276 + 39587802 39588072 MLT1A-int 1186 - 782 1042 127340 195 4 0 15 6 0 50 chain 266144 chr4 191154276 + 39594290 39597184 L1PA3long 6157 + 3261 6157 15384 927 0 2 1967 chain 25190 chr4 191154276 + 39597713 39598014 AluSp 311 - 19 311 103794 7 9 0 285 chain 15212 chr4 191154276 + 39604596 39604809 Tigger4a 237 + 0 235 140741 25 1 9 75 1 8 70 0 7 41 chain 3697 chr4 191154276 + 39617024 39617151 L1MC1 2226 + 2083 2195 211967 16 42 30 13 1 0 4 10 9 29 1 0 11 chain 20485 chr4 191154276 + 39620024 39620296 AluSg7 307 + 38 307 125666 93 0 1 6 21 17 152 chain 22559 chr4 191154276 + 39621821 39622107 AluY 311 + 4 292 117765 128 0 1 98 1 0 37 10 12 12 chain 5188 chr4 191154276 + 39622632 39622692 U7 62 + 1 61 193158 60 chain 25935 chr4 191154276 + 39648667 39648967 AluSp 311 - 12 311 100276 34 1 0 265 chain 7819 chr4 191154276 + 39653488 39653624 LTR54 533 + 109 245 172193 35 11 12 47 6 5 37 chain 327549 chr4 191154276 + 39671787 39676028 L1PA7 6471 - 1 5386 12290 665 1 0 11 318 0 22 7 17 134 2 0 193 0 1 368 0 1 43 1 2 123 0 5 208 0 8 411 9 8 460 0 1439 295 0 4 351 1 0 407 1 2 20 4 1 186 chain 14986 chr4 191154276 + 39681939 39682481 MER30 238 - 0 238 141366 45 3 0 55 1 0 14 334 34 90 chain 10828 chr4 191154276 + 39696772 39696918 BC200 147 + 6 145 156874 114 4 0 8 3 0 17 chain 104348 chr4 191154276 + 39719283 39720686 LTR12C 1709 - 0 1709 35654 74 1 0 8 1 0 399 44 13 67 8 10 20 0 47 8 1 83 25 0 118 11 0 78 234 17 30 13 1 0 6 6 7 108 8 7 343 chain 12919 chr4 191154276 + 39742010 39742154 AluYf4 310 + 130 274 148563 144 chain 22413 chr4 191154276 + 39775941 39776255 AluY 311 + 0 301 118417 10 1 0 5 8 5 98 6 0 14 0 1 150 4 0 18 chain 8047 chr4 191154276 + 39791664 39791751 L1PA4 6152 + 6064 6151 170773 87 chain 24665 chr4 191154276 + 39804422 39804713 AluSx4 309 + 11 302 106641 291 chain 19128 chr4 191154276 + 39804947 39805213 AluSc8 310 + 20 295 129749 111 10 14 105 0 1 11 5 9 24 chain 25940 chr4 191154276 + 39809055 39809358 AluSx1 309 + 6 309 100251 303 chain 24572 chr4 191154276 + 39833227 39833524 AluSp 311 + 12 311 107124 189 7 8 67 0 1 34 chain 5608 chr4 191154276 + 39834125 39834200 HSMAR2 1300 + 58 135 189009 6 3 0 38 0 5 28 chain 24764 chr4 191154276 + 39892985 39893270 AluSp 311 + 0 286 106087 10 1 0 259 0 2 15 chain 25863 chr4 191154276 + 39930774 39931139 MLT2A1 477 + 0 381 100596 86 0 2 6 0 1 30 15 16 22 6 10 178 0 8 22 chain 11902 chr4 191154276 + 39949135 39949321 MER30 238 - 5 200 152592 87 18 38 8 11 0 62 chain 23812 chr4 191154276 + 39959143 39959430 AluY 311 + 20 306 111403 189 2 1 96 chain 25446 chr4 191154276 + 39970053 39970351 AluSp 311 - 13 311 102472 298 chain 5148 chr4 191154276 + 39997767 39997826 MER4E1 777 + 90 149 193568 59 chain 22629 chr4 191154276 + 39998058 39998328 AluSc5 308 - 30 300 117430 270 chain 5329 chr4 191154276 + 40001378 40001474 LTR24C 604 + 359 434 191734 12 21 0 63 chain 26345 chr4 191154276 + 40008948 40009416 MER1A 529 - 4 485 98634 54 17 13 6 1 0 39 0 5 5 2 1 163 14 27 55 76 77 36 chain 2897 chr4 191154276 + 40018669 40018741 MIR 256 + 95 168 227077 13 28 29 31 chain 22630 chr4 191154276 + 40030712 40030972 AluY 311 + 39 300 117419 93 0 1 167 chain 5283 chr4 191154276 + 40068595 40068665 L1MB2 1706 - 224 291 192174 5 3 0 62 chain 3783 chr4 191154276 + 40112806 40112855 L1MD3 1191 - 46 95 210622 49 chain 9779 chr4 191154276 + 40133719 40133869 MER44A 345 - 75 237 161704 23 1 0 6 11 24 109 chain 55037 chr4 191154276 + 40136571 40137176 L1PA3long 6157 - 0 606 55685 4 0 1 601 chain 136494 chr4 191154276 + 40142218 40143764 SVA_D 2077 - 8 2077 26745 659 10 499 20 0 40 423 1 0 408 5 0 20 chain 137296 chr4 191154276 + 40148532 40150122 SVA_D 2077 - 0 2075 26590 441 1 0 181 7 11 38 0 304 53 0 1 10 1 4 31 0 1 9 0 1 33 0 96 213 0 40 104 0 39 38 1 0 416 2 0 11 chain 7111 chr4 191154276 + 40162069 40162268 MER47B 469 + 149 468 176677 13 6 7 24 19 139 55 22 6 14 20 35 26 chain 5755 chr4 191154276 + 40173116 40173188 MLT1B 390 + 0 72 187596 72 chain 14623 chr4 191154276 + 40173854 40174059 MLT2A2 560 - 364 560 142514 13 1 0 8 16 8 167 chain 4246 chr4 191154276 + 40181123 40181203 MIR 256 - 71 149 203916 19 19 17 42 chain 3952 chr4 191154276 + 40188120 40188162 MER1B 344 - 263 305 208108 42 chain 3304 chr4 191154276 + 40189962 40190035 MIR 256 + 88 162 218895 36 23 24 14 chain 25362 chr4 191154276 + 40225387 40225680 AluSp 311 - 7 300 102875 293 chain 23635 chr4 191154276 + 40227872 40228175 AluSp 311 + 8 311 112388 129 5 5 18 5 5 146 chain 6739 chr4 191154276 + 40263449 40263535 LTR56 451 - 366 451 179406 72 1 0 13 chain 46314 chr4 191154276 + 40268548 40269096 MER41A 554 - 0 554 61762 296 0 6 252 chain 56706 chr4 191154276 + 40273362 40274104 MER4E1 777 + 0 766 54717 17 3 0 92 5 0 55 0 5 11 1 0 33 0 1 28 0 1 8 1 0 78 0 19 86 1 2 104 4 10 118 0 1 97 chain 4115 chr4 191154276 + 40305003 40305079 LTR16B 463 - 21 97 205714 43 10 11 17 1 0 5 chain 22767 chr4 191154276 + 40319642 40319963 AluY 311 + 0 282 116740 22 4 0 87 1 0 17 28 0 37 6 0 119 chain 4264 chr4 191154276 + 40325964 40326065 MER5A1 166 + 0 115 203704 39 13 25 14 15 17 20 chain 26034 chr4 191154276 + 40345255 40345618 THE1B 368 - 0 368 99886 88 0 1 39 2 1 7 1 0 18 1 5 9 1 0 5 1 5 21 1 0 169 chain 24239 chr4 191154276 + 40362805 40363106 AluY 311 + 10 309 109000 122 0 1 150 3 0 26 chain 7167 chr4 191154276 + 40376483 40376591 MLT1B 390 + 12 115 176283 12 5 0 2 0 1 83 1 0 5 chain 34830 chr4 191154276 + 40384376 40384955 L1M1 2793 + 1650 2212 76434 16 11 0 132 1 0 4 13 14 12 5 2 8 0 1 62 0 5 6 9 1 20 2 0 127 0 1 9 31 35 61 5 1 45 chain 113099 chr4 191154276 + 40407605 40409466 THE1B-int 1605 + 0 1599 33350 90 1 2 131 5 6 196 320 31 174 6 9 36 2 1 19 18 38 20 3 0 202 1 2 164 46 48 177 0 1 43 0 1 71 0 1 136 chain 27970 chr4 191154276 + 40409471 40409825 THE1B 368 + 0 368 93110 38 2 17 121 1 0 192 chain 5619 chr4 191154276 + 40465734 40465814 MADE1 96 + 0 96 188869 32 3 19 45 chain 16957 chr4 191154276 + 40500865 40501067 AluSp 311 + 85 287 135708 202 chain 8748 chr4 191154276 + 40520720 40520887 MER30 238 - 0 199 166928 76 56 88 35 chain 4458 chr4 191154276 + 40558545 40558596 MADE1 96 + 45 96 201253 51 chain 2667 chr4 191154276 + 40592709 40592808 L1MB5 1630 + 1280 1382 230808 13 4 6 13 43 44 26 chain 23771 chr4 191154276 + 40602735 40603019 AluSp 311 + 14 299 111647 96 0 1 188 chain 24512 chr4 191154276 + 40612679 40613035 THE1A 353 + 0 353 107483 84 2 1 26 1 0 122 9 9 13 4 2 21 1 0 15 0 2 58 chain 25872 chr4 191154276 + 40642744 40643043 AluY 311 + 10 310 100557 116 0 1 183 chain 8051 chr4 191154276 + 40643050 40643140 AluY 311 + 36 126 170746 90 chain 15291 chr4 191154276 + 40643145 40643325 AluY 311 + 126 306 140509 180 chain 22565 chr4 191154276 + 40654725 40654982 AluSp 311 - 53 310 117738 257 chain 5693 chr4 191154276 + 40685414 40685505 L1MB3 1562 - 3 93 188173 25 11 10 55 chain 7982 chr4 191154276 + 40685881 40686084 L1MB3 1562 - 3 176 171157 25 11 10 63 64 36 4 1 0 35 chain 25563 chr4 191154276 + 40689341 40689646 AluSp 311 + 11 311 101915 114 6 1 185 chain 21306 chr4 191154276 + 40693402 40693629 AluYa5 310 - 9 236 122840 227 chain 3586 chr4 191154276 + 40698457 40698498 L1MC1 2226 + 1924 1965 213879 41 chain 4719 chr4 191154276 + 40711918 40712003 L1MB8 1703 + 1501 1587 198288 29 6 7 29 6 6 15 chain 11779 chr4 191154276 + 40715348 40715540 MER47A 366 - 128 365 153140 130 11 55 16 12 13 23 chain 19882 chr4 191154276 + 40718308 40718561 MER47A 366 + 97 353 127544 17 0 1 157 0 1 18 0 1 61 chain 25492 chr4 191154276 + 40728033 40728318 AluSp 311 - 15 300 102264 285 chain 26482 chr4 191154276 + 40748023 40748323 AluSp 311 - 11 311 98106 300 chain 22158 chr4 191154276 + 40755713 40756058 THE1B 368 + 0 368 119555 44 0 15 59 7 6 42 7 6 26 8 6 10 0 4 10 7 15 125 chain 324405 chr4 191154276 + 40766094 40769633 L1PA3long 6157 - 0 3535 12423 5 2 0 199 2 0 3331 chain 14741 chr4 191154276 + 40789194 40789354 SVA_A 1864 + 1703 1863 142136 160 chain 26724 chr4 191154276 + 40794486 40794782 AluYf4 310 + 0 293 97247 281 3 0 12 chain 68023 chr4 191154276 + 40804818 40805579 L1PA3long 6157 - 10 774 49237 118 1 4 642 chain 20513 chr4 191154276 + 40837015 40837270 AluSc8 310 + 2 262 125589 46 9 10 41 0 1 31 1 4 127 chain 3826 chr4 191154276 + 40873089 40873139 MLT1D 503 - 360 410 209987 50 chain 35260 chr4 191154276 + 40887163 40887621 LTR71A 459 + 0 459 75847 177 0 1 20 5 6 172 8 7 76 chain 27755 chr4 191154276 + 40924988 40925294 AluYk11 308 - 6 308 93851 92 1 0 199 3 0 11 chain 3847 chr4 191154276 + 40962871 40962911 MLT1J 494 + 99 139 209679 40 chain 27192 chr4 191154276 + 40963371 40963676 L1PA2 6032 + 5729 6028 95616 292 6 0 7 chain 14063 chr4 191154276 + 40970821 40971183 THE1B 368 + 0 368 144343 108 127 134 64 37 39 5 3 0 18 chain 4569 chr4 191154276 + 40972806 40972863 MER81 114 + 38 95 200012 57 chain 36676 chr4 191154276 + 40998859 40999352 LOR1a 498 + 0 491 73992 44 0 1 173 6 0 210 9 12 51 chain 25483 chr4 191154276 + 41006575 41006876 AluY 311 + 0 305 102301 43 0 4 258 chain 6295 chr4 191154276 + 41021760 41021833 HERV9-int 5642 + 4751 4824 182852 73 chain 57978 chr4 191154276 + 41023365 41024136 LTR12 884 + 0 869 53987 25 1 0 72 2 18 23 22 6 130 13 102 281 0 10 202 chain 63983 chr4 191154276 + 41025436 41026424 L1PA14 3548 + 2513 3474 51012 16 8 7 153 1 0 202 0 3 44 3 1 3 1 0 9 1 0 4 1 0 38 9 7 5 2 0 60 4 2 45 10 6 13 2 0 6 1 0 4 1 0 6 0 1 73 1 0 111 18 13 29 13 18 6 1 0 19 1 0 38 6 0 10 1 0 9 chain 38832 chr4 191154276 + 41026472 41027132 LTR76 689 + 0 645 70974 51 79 81 76 0 1 14 16 8 22 13 20 13 1 0 28 2 0 198 15 0 96 0 1 36 chain 29247 chr4 191154276 + 41034791 41035099 AluYg6 310 - 2 310 87812 308 chain 11628 chr4 191154276 + 41037691 41037901 MER2 342 + 6 216 153782 42 28 32 36 2 0 29 6 4 67 chain 125444 chr4 191154276 + 41050657 41052151 SVA_C 1631 + 0 1631 29266 22 0 3 5 1 0 7 1 0 250 0 10 209 0 77 190 0 40 51 1 0 4 45 0 16 2 1 4 0 1 100 0 41 264 0 14 322 chain 44878 chr4 191154276 + 41061406 41061919 MER9a1 513 + 0 513 63197 513 chain 24370 chr4 191154276 + 41069153 41069442 AluSp 311 + 9 296 108256 237 2 0 50 chain 204518 chr4 191154276 + 41116062 41118480 L1PA7 6471 + 4030 6458 18883 246 1 3 1052 7 8 134 1 0 138 0 3 9 0 5 339 5 6 479 1 0 6 chain 15698 chr4 191154276 + 41179787 41180015 Tigger4a 237 - 7 237 139275 40 7 0 7 5 15 4 1 0 164 chain 9576 chr4 191154276 + 41182557 41182683 AluJb 308 + 40 301 162711 37 0 135 89 chain 35364 chr4 191154276 + 41185781 41186276 MER1A 529 - 5 488 75711 51 43 31 401 chain 7349 chr4 191154276 + 41228002 41228114 L1MB3 1562 + 1439 1552 175100 29 1 0 35 0 3 18 3 2 26 chain 23644 chr4 191154276 + 41228128 41228409 AluY 311 + 0 278 112338 62 3 0 216 chain 5390 chr4 191154276 + 41235873 41235939 MER72 723 - 0 66 191087 66 chain 63502 chr4 191154276 + 41238884 41239571 L1PA2 6032 - 0 687 51243 687 chain 3347 chr4 191154276 + 41252915 41252955 MER65A 464 + 0 40 218102 40 chain 552265 chr4 191154276 + 41272452 41278571 L1PA4 6152 - 8 6138 1163 2812 0 12 111 1 0 116 2 1 1848 0 1 1229 chain 3195 chr4 191154276 + 41294355 41294392 L1MB3 1562 + 656 693 221017 37 chain 46736 chr4 191154276 + 41301683 41303823 L1PA17 2846 - 153 1897 61426 43 1 0 14 1 0 21 42 38 18 71 66 19 0 4 112 1321 923 37 5 15 220 25 24 190 chain 7715 chr4 191154276 + 41305257 41305341 HY3 101 - 3 87 172827 84 chain 4470 chr4 191154276 + 41305542 41305646 MER5A 189 + 40 184 201112 15 20 45 7 0 14 42 4 5 16 chain 8457 chr4 191154276 + 41311440 41311539 MSTB 430 + 0 99 168528 99 chain 182077 chr4 191154276 + 41314750 41317198 L1PA8A 6298 + 4140 6291 20775 1348 0 3 60 302 0 164 1 0 145 1 5 319 1 0 107 chain 527455 chr4 191154276 + 41351481 41357628 L1PA6 6164 + 0 6160 4451 509 2 1 277 0 17 569 1 0 948 10 4 471 0 1 78 3 1 313 0 1 434 0 1 275 2 1 361 1 2 722 0 1 335 0 1 243 5 6 430 16 16 142 chain 23475 chr4 191154276 + 41358772 41359500 L1MA3 4352 + 3883 4282 113243 170 20 24 15 54 27 44 5 8 9 1 0 18 306 0 60 2 0 24 chain 4908 chr4 191154276 + 41392528 41392586 MER53 195 + 0 58 196180 58 chain 112852 chr4 191154276 + 41400228 41404135 L1PA3long 6157 - 0 2086 33416 80 2603 782 1224 chain 79021 chr4 191154276 + 41404135 41405003 L1PA3long 6157 + 5288 6157 43994 107 0 1 761 chain 29046 chr4 191154276 + 41428031 41428337 AluYa5 310 - 4 310 88778 306 chain 8168 chr4 191154276 + 41445209 41445295 AluYb8 318 - 1 87 170131 86 chain 7165 chr4 191154276 + 41460034 41460186 L1MA3 4352 + 4197 4346 176301 38 4 0 47 8 6 15 24 27 16 chain 17561 chr4 191154276 + 41477664 41477896 L1PA8 5853 + 5625 5853 134095 51 4 3 11 1 0 53 1 0 17 2 1 92 chain 152144 chr4 191154276 + 41492297 41494422 SVA_A 1864 - 0 1849 24317 14 0 2 704 1 0 82 8 5 97 39 0 37 39 0 36 1 0 27 4 7 50 2 0 40 1 0 21 153 0 23 40 0 32 1 0 65 3 0 39 4 6 562 chain 3022 chr4 191154276 + 41493203 41493242 SVA_A 1864 - 1201 1238 146691 10 6 4 23 chain 6217 chr4 191154276 + 41493500 41493653 SVA_A 1864 - 936 1009 82013 42 1 0 19 79 0 12 chain 4805 chr4 191154276 + 41493562 41493641 SVA_A 1864 - 1258 1337 128418 79 chain 2250 chr4 191154276 + 41493676 41493713 SVA_A 1864 - 1411 1448 128418 37 chain 37000 chr4 191154276 + 41520602 41521067 L1PA8 5853 - 5 464 73510 87 2 1 19 2 1 61 1 0 70 2 0 45 1 0 175 chain 16552 chr4 191154276 + 41566725 41567070 THE1D 372 + 2 357 136788 49 2 0 16 48 49 50 20 19 6 0 1 12 19 34 40 11 7 72 chain 19655 chr4 191154276 + 41568194 41568442 Tigger1 2417 - 755 1004 128237 58 1 0 5 0 1 123 0 1 61 chain 26395 chr4 191154276 + 41589954 41590240 L1PA3long 6157 - 0 286 98434 286 chain 4910 chr4 191154276 + 41595792 41595858 MER58A 224 + 149 212 196162 6 3 0 57 chain 20627 chr4 191154276 + 41679957 41680202 L1PA7 6471 - 6 249 125199 6 2 0 237 chain 25972 chr4 191154276 + 41713848 41714238 L1PA8 5853 + 5464 5846 100131 58 1 0 38 13 12 38 2 0 68 13 11 51 2 1 19 2 1 85 chain 19259 chr4 191154276 + 41722573 41722852 MER41B 635 + 25 596 129354 101 0 1 51 1 288 14 5 4 65 12 17 30 chain 8404 chr4 191154276 + 41773795 41773897 L1PA7 6471 + 6369 6468 168824 89 3 0 10 chain 17614 chr4 191154276 + 41774403 41774644 L1PA8 5853 - 0 243 133951 21 0 6 66 1 0 18 1 0 49 6 5 8 1 0 70 chain 11677 chr4 191154276 + 41782184 41782326 AluSq2 311 + 160 302 153573 142 chain 25554 chr4 191154276 + 41838814 41839178 THE1B 368 + 0 368 101960 169 1 0 27 0 3 15 0 4 6 28 26 118 chain 10200 chr4 191154276 + 41851314 41851446 L1P4 1494 - 1003 1134 159619 33 1 0 98 chain 21979 chr4 191154276 + 41851458 41851727 L1PA16 3655 + 3306 3579 120322 211 0 4 58 chain 3514 chr4 191154276 + 41894780 41894822 MER5A1 166 + 8 50 215162 42 chain 522265 chr4 191154276 + 41902614 41911915 L1PA7 6471 - 14 6395 4932 446 27 1 393 1 0 373 1 0 31 1 2 191 12 1 116 7 12 116 5 11 285 0 1 201 1 3 72 0 1 642 6 10 54 0 4 137 0 2 716 13 0 306 6 7 206 0 1 282 0 4 304 2897 0 30 0 1 100 0 1 295 1 2 168 11 10 466 0 1 40 6 0 336 chain 260985 chr4 191154276 + 41907581 41910433 L1PA3long 6157 + 3306 6157 15643 2600 1 0 251 chain 4711 chr4 191154276 + 41921742 41921823 MER83 447 - 7 90 198384 21 0 1 8 2 0 5 6 9 39 chain 24580 chr4 191154276 + 41922457 41922794 THE1C 375 + 0 338 107082 125 3 0 5 5 9 37 1 2 5 1 0 155 chain 20221 chr4 191154276 + 41923901 41924137 THE1C-int 1605 + 1361 1597 126472 236 chain 21726 chr4 191154276 + 41929878 41930251 MER50 708 - 14 603 121300 54 22 80 79 49 48 32 1 160 136 chain 14840 chr4 191154276 + 41932123 41932366 MER51A 677 + 0 215 141812 123 0 1 17 0 1 28 6 9 10 40 7 19 chain 6214 chr4 191154276 + 41936241 41936335 MER51A 677 + 181 267 183465 18 10 0 13 0 2 53 chain 23854 chr4 191154276 + 41948980 41949266 AluSc 308 + 9 294 111155 11 1 0 274 chain 8174 chr4 191154276 + 41969894 41970026 THE1C 375 + 0 125 170105 14 1 0 46 16 10 55 chain 105237 chr4 191154276 + 41970119 41971676 THE1C-int 1605 + 20 1596 35443 21 1 0 7 4 5 49 1 58 41 9 14 225 91 16 13 0 10 84 2 6 58 15 16 78 5 4 26 0 9 85 30 35 142 1 0 150 1 2 250 0 4 168 chain 9453 chr4 191154276 + 41973174 41973385 MER33 330 - 1 226 163303 25 15 10 44 1 0 9 0 6 44 48 62 25 chain 119994 chr4 191154276 + 41974416 41975976 THE1B-int 1605 + 0 1595 31064 107 0 3 31 0 1 4 1 0 272 1 0 10 11 36 197 0 8 581 10 11 61 9 7 33 0 1 23 0 1 150 1 0 58 chain 24597 chr4 191154276 + 42023934 42024246 AluYb8 318 - 1 313 107013 190 0 1 24 18 19 20 2 0 58 chain 533433 chr4 191154276 + 42043778 42050256 L1PA7 6471 + 0 6469 3783 396 7 8 195 37 24 165 2 0 673 0 9 289 0 2 465 4 14 392 9 0 12 0 1 63 0 3 245 0 1 138 0 4 502 1 0 227 10 1 276 0 1 47 12 0 45 0 1 81 3 1 393 0 4 277 2 0 238 0 4 422 1 2 413 7 9 415 3 0 11 chain 20051 chr4 191154276 + 42058301 42058629 THE1B 368 - 0 367 126973 75 15 30 20 35 45 30 1 0 109 0 15 43 chain 34935 chr4 191154276 + 42060138 42060561 THE1B-int 1605 - 1180 1605 76288 102 0 1 44 1 0 242 0 2 34 chain 24038 chr4 191154276 + 42083948 42084247 AluY 311 + 0 296 110123 10 4 0 120 1 2 164 chain 56978 chr4 191154276 + 42103831 42104599 L1PA8 5853 + 5124 5853 54542 69 0 2 121 18 0 78 0 1 96 17 1 72 2 1 43 2 0 74 9 6 52 2 1 19 2 1 92 chain 16450 chr4 191154276 + 42105069 42105290 L1MA6 2487 - 957 1205 137061 156 2 32 40 3 0 20 chain 2156 chr4 191154276 + 42108130 42108216 MER30 238 + 43 153 153219 57 0 24 29 chain 24359 chr4 191154276 + 42108229 42108520 AluYc3 301 - 0 297 108327 42 0 6 249 chain 1805 chr4 191154276 + 42108527 42108599 MER30 238 + 160 232 153219 72 chain 52426 chr4 191154276 + 42130217 42131518 L1PA10 4194 + 3439 4158 57336 141 618 35 153 2 0 24 0 8 158 1 0 147 0 2 5 3 0 4 3 0 15 0 1 16 1 0 10 chain 64084 chr4 191154276 + 42160234 42160983 LTR17 781 - 10 781 50973 21 0 22 401 1 0 161 0 1 165 chain 29883 chr4 191154276 + 42178261 42178653 Tigger1 2417 - 197 594 85156 134 17 20 47 0 1 129 0 1 65 chain 21057 chr4 191154276 + 42187102 42187475 MSTA 426 + 0 384 123701 11 0 3 12 1 2 75 4 5 13 1 0 8 0 4 26 5 9 25 0 1 20 35 25 54 6 0 9 0 14 68 chain 26305 chr4 191154276 + 42196279 42196574 AluYf5 307 - 7 307 98813 187 0 5 108 chain 22935 chr4 191154276 + 42197285 42197569 AluY 311 + 0 287 115927 12 0 1 39 4 7 64 2 0 9 0 1 154 chain 23637 chr4 191154276 + 42223269 42223575 AluY 311 + 3 302 112374 65 0 1 53 4 0 4 5 0 149 0 1 26 chain 24183 chr4 191154276 + 42233257 42233546 AluYk4 311 - 11 301 109310 243 4 5 42 chain 54013 chr4 191154276 + 42247182 42248781 Tigger1 2417 + 1503 2417 56352 531 1 2 14 802 169 7 1 0 30 3 0 28 56 5 15 3 5 108 chain 12158 chr4 191154276 + 42267370 42267540 MER30 238 - 8 201 151581 31 4 1 60 1 0 11 0 28 28 1 0 34 chain 3749 chr4 191154276 + 42268887 42268929 LTR12C 1709 + 676 718 211161 42 chain 4837 chr4 191154276 + 42272229 42272295 MER34 540 - 8 72 196915 30 3 1 33 chain 170585 chr4 191154276 + 42276915 42278804 L1PA4 6152 + 4239 6136 21982 109 0 4 954 0 4 826 chain 59890 chr4 191154276 + 42287454 42288166 LTR17 781 - 72 781 52879 179 1 0 203 1 0 120 2 1 206 chain 328440 chr4 191154276 + 42288478 42292335 HERV17-int 4347 - 0 4334 12261 231 0 11 90 0 1 897 0 1 475 0 8 216 1 19 928 9 8 5 0 1 632 0 10 15 23 26 8 0 430 196 1 0 26 2 0 35 1 0 51 2 1 13 chain 4203 chr4 191154276 + 42292335 42292387 HERV17-int 4347 - 4156 4208 203435 52 chain 4887 chr4 191154276 + 42292388 42292451 HERV17-int 4347 - 4208 4269 196408 27 2 0 34 chain 4243 chr4 191154276 + 42292453 42292503 HERV17-int 4347 - 4270 4320 203973 50 chain 59765 chr4 191154276 + 42294154 42294913 LTR17 781 - 0 781 52954 48 1 23 383 1 0 65 2 8 6 6 0 161 0 1 86 chain 41694 chr4 191154276 + 42295088 42295634 MER41A 554 + 0 554 67037 121 1 2 136 18 21 130 0 5 107 1 0 32 chain 23974 chr4 191154276 + 42297846 42298132 AluY 311 + 0 293 110481 126 0 5 128 0 1 21 0 1 11 chain 44981 chr4 191154276 + 42312240 42312850 LTR9B 643 - 18 643 63080 17 21 20 56 1 15 34 5 7 10 0 1 255 10 9 201 chain 37511 chr4 191154276 + 42314239 42314700 LTR2 463 - 0 463 72799 88 16 17 167 0 1 190 chain 36296 chr4 191154276 + 42315427 42315992 LTR10F 562 + 0 562 74507 116 0 115 25 118 0 306 chain 77020 chr4 191154276 + 42316589 42317629 LTR12D 1347 - 2 1347 44959 101 0 1 4 11 217 208 6 12 91 0 17 61 5 5 17 0 4 39 5 36 196 2 38 109 4 7 119 4 5 58 chain 207084 chr4 191154276 + 42319103 42322099 HERVIP10FH-int 2884 + 149 2866 18709 60 6 0 190 3 0 90 0 3 50 0 7 74 1 0 44 0 4 7 0 2 41 0 1 446 0 1 41 0 2 168 4 1 7 3 0 11 1 0 7 1 0 63 5 0 40 0 1 88 18 0 15 43 26 12 7 1 14 20 3 43 19 7 42 10 0 3 1 0 15 5 4 115 0 4 139 10 9 199 9 8 17 1 0 300 0 1 64 1 0 66 1 0 50 1 0 17 1 0 13 10 4 35 207 22 9 2 0 11 chain 37398 chr4 191154276 + 42322170 42322983 LTR10F 562 + 0 562 72955 35 0 3 109 3 84 103 0 1 200 336 0 27 chain 109160 chr4 191154276 + 42326519 42327793 L1PA6 6164 + 4880 6162 34402 438 0 4 88 2 5 433 1 0 122 4 6 186 chain 39564 chr4 191154276 + 42335737 42336240 MLT2A2 560 - 0 560 69943 147 0 11 42 0 47 133 1 0 180 chain 9742 chr4 191154276 + 42354393 42354564 MER44A 345 + 146 314 161883 15 6 10 87 9 0 7 6 8 41 chain 2986 chr4 191154276 + 42371198 42371250 MER33 330 + 133 183 225326 26 1 0 9 2 1 14 chain 42247 chr4 191154276 + 42375147 42376138 LTR12_ 688 - 0 688 66336 95 432 0 91 4 112 94 3 1 32 5 4 55 0 24 180 chain 5179 chr4 191154276 + 42375266 42375365 LTR12_ 688 - 127 229 193241 26 0 1 32 23 25 18 chain 9113 chr4 191154276 + 42378552 42378912 LTR80B 572 - 0 414 165001 50 0 1 28 1 6 14 87 92 27 120 163 33 chain 4474 chr4 191154276 + 42387242 42387299 MER58B 340 + 72 129 201081 57 chain 18939 chr4 191154276 + 42389134 42389474 THE1B 368 - 0 368 130258 36 25 33 56 29 42 5 3 0 27 1 0 33 17 28 108 chain 3553 chr4 191154276 + 42451156 42451195 Charlie1a 1436 - 567 606 214508 39 chain 27607 chr4 191154276 + 42463321 42463676 THE1B 368 + 0 368 94330 44 0 15 21 1 2 86 1 0 30 2 0 170 chain 120296 chr4 191154276 + 42463677 42465227 THE1B-int 1605 + 1 1600 30941 428 2 27 65 1 0 111 0 1 73 8 6 317 1 0 4 0 1 74 0 4 15 0 19 51 0 1 42 0 2 358 chain 24597 chr4 191154276 + 42465232 42465548 THE1B 368 + 0 343 107012 15 0 11 18 0 15 110 1 0 29 0 2 143 chain 21037 chr4 191154276 + 42469757 42470017 L1PB1 5432 - 686 951 123778 65 0 5 195 chain 46308 chr4 191154276 + 42470017 42470824 L1PB1 5432 + 4738 5427 61767 362 7 0 14 98 0 33 1 0 11 5 1 9 7 5 36 0 4 6 1 0 10 9 8 44 1 0 15 2 0 6 1 0 11 1 6 8 2 0 5 1 0 14 2 0 13 0 1 10 1 0 21 1 0 13 1 0 13 1 0 6 1 0 4 chain 48883 chr4 191154276 + 42487989 42488557 LTR10C 591 - 0 591 59817 81 0 2 287 0 1 93 0 20 107 chain 24148 chr4 191154276 + 42511595 42511890 AluY 311 + 0 306 109479 64 0 8 60 0 1 141 1 3 29 chain 32203 chr4 191154276 + 42528355 42528785 MLT2A1 477 + 0 477 80519 169 0 4 50 0 16 93 8 3 50 4 0 8 9 45 39 chain 377082 chr4 191154276 + 42528785 42533457 HERVL-int 5654 + 0 5361 10844 43 0 1 80 3 6 37 0 4 768 0 1 5 8 7 10 0 696 50 8 7 859 0 2 18 0 16 336 2 7 99 9 2 24 4 16 341 1 0 177 1 0 336 0 2 351 7 22 111 80 24 70 10 4 30 0 1 48 0 1 367 0 3 379 chain 26729 chr4 191154276 + 42534723 42535110 LTR7B 505 + 0 505 97227 91 0 3 11 0 10 56 10 79 5 1 0 35 1 0 21 0 41 89 14 13 25 3 1 25 chain 24744 chr4 191154276 + 42538871 42539180 AluSp 311 + 10 311 106202 20 4 0 95 2 0 179 2 0 7 chain 157507 chr4 191154276 + 42539188 42541392 L1PB1 5432 + 3216 5398 23660 174 0 1 56 0 1 109 0 1 125 0 5 40 1 3 151 0 1 66 0 2 117 10 1 406 0 4 10 0 6 42 2 0 72 0 4 7 3 0 394 0 2 87 17 13 18 1 0 20 9 5 9 2 0 52 2 1 16 6 5 39 4 3 16 24 8 18 13 10 10 2 0 23 2 1 22 1 0 6 chain 29508 chr4 191154276 + 42544471 42544826 L1PA6 6164 - 8 370 86606 150 5 12 200 chain 30585 chr4 191154276 + 42548261 42548600 L1PA4 6152 + 5804 6143 83230 339 chain 56962 chr4 191154276 + 42566129 42566852 THE1B-int 1605 + 873 1605 54554 149 2 0 8 0 15 57 14 9 275 1 0 4 0 1 204 0 1 9 chain 24291 chr4 191154276 + 42566852 42567209 THE1B 368 + 0 368 108703 40 0 15 87 1 0 24 8 6 32 3 0 5 0 3 64 18 17 75 chain 24677 chr4 191154276 + 42578222 42578521 AluY 311 + 16 311 106568 102 4 0 193 chain 23001 chr4 191154276 + 42623499 42623955 L1PA13 3608 + 3131 3548 115621 29 1 0 64 0 1 14 0 1 20 0 1 13 1 0 5 1 0 57 34 24 33 2 0 3 2 0 47 6 0 5 2 0 20 1 0 12 30 24 14 1 0 6 7 1 10 4 1 12 chain 22536 chr4 191154276 + 42652926 42653283 THE1B 368 + 0 368 117866 47 47 48 74 8 7 24 0 2 77 1 9 42 0 1 37 chain 12039 chr4 191154276 + 42653283 42653471 THE1B-int 1605 + 0 190 152036 42 2 3 44 5 4 18 2 5 56 1 0 18 chain 145057 chr4 191154276 + 42680922 42683050 MER57-int 2662 + 526 2659 25314 314 6 7 23 0 8 225 0 4 262 0 2 33 1 0 40 0 1 150 21 46 74 62 64 18 0 1 35 2 1 75 3 0 404 0 1 19 3 0 91 18 12 26 0 2 40 27 13 26 1 0 5 1 0 10 9 6 13 26 20 28 3 0 34 chain 546096 chr4 191154276 + 42698317 42704453 L1PA4 6152 - 6 6152 1930 852 2 0 748 0 3 187 0 2 39 0 1 375 0 1 111 0 1 205 0 3 2374 0 1 1243 chain 5886 chr4 191154276 + 42718584 42718659 LTR50 688 - 232 306 186314 32 1 0 42 chain 24869 chr4 191154276 + 42720902 42721270 THE1D 372 - 0 372 105523 32 1 0 116 52 57 167 chain 5186 chr4 191154276 + 42723400 42723479 MLT1D 503 - 143 222 193185 8 1 0 22 5 6 43 chain 36515 chr4 191154276 + 42757578 42758045 L1PA10 4194 - 33 496 74219 11 1 0 34 18 15 403 chain 17864 chr4 191154276 + 42761765 42762041 L1PA16 3655 + 2995 3266 133205 93 1 2 29 7 6 79 1 0 23 14 10 29 chain 112058 chr4 191154276 + 42774059 42776869 L1PB1 5432 + 3733 5398 33647 5 0 2 70 0 4 311 361 6 359 0 1 59 1 0 70 3 0 5 1 0 4 0 1 68 5 7 68 0 7 323 1 2 10 771 2 21 8 6 14 5 1 9 2 0 52 2 1 16 2 1 41 46 29 18 33 28 16 1 0 23 1 0 5 chain 20241 chr4 191154276 + 42777499 42777857 THE1D 372 - 11 372 126410 21 1 0 116 84 89 33 1 0 102 chain 116090 chr4 191154276 + 42792848 42794156 L1PA5 6144 - 1602 2910 32384 501 1 0 4 0 1 665 1 0 121 0 1 15 chain 141295 chr4 191154276 + 42794156 42795737 L1PA5 6144 + 4561 6143 25937 1225 0 1 356 chain 17805 chr4 191154276 + 42826097 42826303 L1PA7 6471 + 6252 6458 133393 206 chain 150212 chr4 191154276 + 42984072 42985694 L1PA2 6032 - 1 1624 24582 859 0 1 763 chain 26268 chr4 191154276 + 42992197 42992477 AluYa5 310 - 0 280 98943 280 chain 87825 chr4 191154276 + 43003650 43004678 LTR5A 1029 - 0 1029 40437 13 1 0 110 5 4 93 0 4 636 0 14 8 1 0 19 14 0 128 chain 8367 chr4 191154276 + 43005237 43005330 L1PA4 6152 + 6058 6151 169036 93 chain 78709 chr4 191154276 + 43007936 43008980 MER11C 1089 + 0 1059 44181 241 5 14 62 0 4 64 1 0 147 47 46 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 139 chain 5093 chr4 191154276 + 43030359 43030421 MER53 195 - 133 195 194150 62 chain 39653 chr4 191154276 + 43076744 43077254 LTR10D 510 + 0 510 69821 70 1 5 20 6 0 173 2 3 108 5 6 125 chain 148243 chr4 191154276 + 43078283 43080439 MER4-int 2692 - 0 2170 24854 118 0 10 52 2 1 16 1 0 35 1 0 173 0 3 13 1 0 18 1 0 29 0 1 41 4 1 21 18 19 230 0 6 16 1 0 109 3 2 29 0 1 198 0 4 2 4 0 76 4 7 27 1 0 47 0 9 10 18 9 33 2 0 14 15 14 22 1 0 65 57 58 51 1 0 330 4 8 89 0 3 6 3 0 69 0 1 37 1 0 37 chain 64614 chr4 191154276 + 43083862 43084641 LTR17 781 + 0 781 50741 119 1 10 179 8 0 19 0 1 453 chain 552882 chr4 191154276 + 43094886 43101030 L1PA3long 6157 + 0 6144 1081 882 0 1 2319 3 0 1926 0 1 774 0 1 240 chain 56978 chr4 191154276 + 43117165 43117942 L1M1 2793 + 921 1696 54540 82 1 0 7 0 1 135 2 1 37 2 1 83 5 0 6 20 25 199 1 0 30 0 1 167 chain 123746 chr4 191154276 + 43121786 43123368 THE1A-int 1579 - 10 1579 29792 249 0 1 212 0 1 70 0 2 529 1 0 25 4 7 8 24 0 86 0 1 103 2 3 113 0 3 156 chain 29213 chr4 191154276 + 43123368 43123716 THE1A 353 - 0 353 87989 68 0 5 280 chain 5651 chr4 191154276 + 43131275 43131348 L1PA7 6471 - 5 75 188553 7 3 0 63 chain 68105 chr4 191154276 + 43142371 43143268 L1PA10 4194 + 3244 4146 49199 168 0 1 152 0 6 71 1 2 32 3 1 59 0 2 233 0 1 110 1 0 35 4 1 28 chain 89690 chr4 191154276 + 43152553 43153608 L1PA6 6164 - 2593 3648 39669 381 0 1 46 0 4 590 5 0 33 chain 214877 chr4 191154276 + 43153608 43156190 L1PA6 6164 + 3578 6159 18174 125 2 1 975 16 11 628 0 4 669 1 5 7 1 0 151 2 0 5 chain 74641 chr4 191154276 + 43168993 43170261 L1PB1 5432 - 10 1258 46189 18 1 0 13 1 0 21 1 0 16 10 8 14 1 0 5 3 1 15 18 9 6 2 0 16 1 0 43 1 0 16 2 1 24 39 38 14 1 0 5 2 1 23 17 0 9 55 74 171 13 1 53 3 5 97 0 2 73 0 1 19 1 5 117 2 1 254 0 7 52 chain 3653 chr4 191154276 + 43169357 43169397 L1PB1 5432 + 5040 5080 212733 40 chain 19909 chr4 191154276 + 43170283 43170528 L1PB 1623 + 668 913 127445 245 chain 60244 chr4 191154276 + 43173178 43173993 L1PA10 4194 + 3335 4150 52709 77 11 13 4 1 0 185 0 1 82 0 1 241 12 13 132 1 0 33 3 0 33 chain 100340 chr4 191154276 + 43187075 43188164 L1PA2 6032 - 5 1096 36680 248 0 2 841 chain 26968 chr4 191154276 + 43195115 43195492 THE1C 375 + 0 375 96374 172 24 23 155 1 0 25 chain 2912 chr4 191154276 + 43203280 43203315 ORSL 269 - 83 118 226827 35 chain 120549 chr4 191154276 + 43211265 43212635 L1PA5 6144 + 4763 6138 30858 1231 1 2 35 1 0 31 0 5 71 chain 122750 chr4 191154276 + 43214840 43216206 L1PA3long 6157 - 1 1365 30137 128 15 13 1223 chain 31209 chr4 191154276 + 43230085 43230571 THE1B-int 1605 - 1108 1605 82148 35 1 65 95 13 14 135 54 0 153 chain 28106 chr4 191154276 + 43262230 43262642 L1PA8 5853 - 0 398 92626 93 1 0 19 6 5 40 15 14 33 8 0 37 8 6 44 2 1 106 chain 29246 chr4 191154276 + 43269790 43270141 L1PA6 6164 - 4 351 87815 8 2 0 148 2 0 191 chain 26135 chr4 191154276 + 43281595 43281922 L1PA7 6471 + 6145 6466 99462 309 6 0 12 chain 11271 chr4 191154276 + 43288917 43289039 L1PA2 6032 - 2815 2937 154108 122 chain 260411 chr4 191154276 + 43289039 43291853 L1PA2 6032 + 3216 6030 15678 2814 chain 17777 chr4 191154276 + 43351815 43352028 AluSp 311 + 23 236 133490 213 chain 29138 chr4 191154276 + 43362955 43363276 L1PA4 6152 + 5831 6152 88373 321 chain 31746 chr4 191154276 + 43378225 43378656 L1PA10 4194 + 3723 4150 81252 39 2 3 311 2 0 41 3 0 33 chain 28232 chr4 191154276 + 43398526 43398831 AluYb8 318 + 0 304 92186 206 1 0 98 chain 31280 chr4 191154276 + 43417311 43417648 L1PA2 6032 - 8 345 82022 337 chain 57509 chr4 191154276 + 43420253 43420956 LTR30 714 - 9 714 54231 171 3 5 68 11 12 251 1 0 198 chain 24573 chr4 191154276 + 43420956 43421278 THE1D-int 1627 - 1303 1627 107122 84 0 3 221 6 5 11 chain 106142 chr4 191154276 + 43428612 43429949 L1PA7 6471 - 19 1358 35224 244 0 1 572 0 1 13 1 2 134 1 0 47 35 0 12 1 36 277 chain 32486 chr4 191154276 + 43435398 43435872 LTR15 485 + 0 478 80054 79 2 0 5 9 11 55 1 3 93 0 1 4 1 0 25 0 4 157 1 0 5 2 0 7 10 11 18 chain 29974 chr4 191154276 + 43447354 43447841 MLT2A1 477 - 0 470 84892 47 61 47 32 1 2 121 3 0 14 11 13 31 5 2 161 chain 350774 chr4 191154276 + 43447848 43452218 HERVL-int 5654 - 0 4405 11575 823 0 6 7 12 6 39 6 0 11 0 6 722 4 0 309 12 36 530 1 0 78 4 7 48 7 6 331 0 4 529 0 3 431 0 2 100 0 1 4 8 12 354 chain 29258 chr4 191154276 + 43454832 43455230 MLT2A1 477 - 79 477 87752 14 10 13 201 6 3 167 chain 47611 chr4 191154276 + 43471415 43472020 HERVK14-int 1672 + 5 1334 60756 25 1 0 11 1 0 229 5 0 35 1 0 34 2 0 87 0 735 147 1 0 26 chain 27223 chr4 191154276 + 43474473 43474845 LTR14A 344 + 0 342 95517 111 31 0 160 0 1 70 chain 80931 chr4 191154276 + 43489662 43490665 L1PA7 6471 - 5 1006 43227 9 6 0 506 1 2 36 2 3 205 2 5 61 0 1 19 2 0 154 chain 25542 chr4 191154276 + 43500682 43501039 THE1A 353 - 0 352 102039 32 0 1 47 5 2 72 1 0 58 1 0 31 8 7 102 chain 12473 chr4 191154276 + 43502489 43502624 L1PA4 6152 - 5 140 150362 135 chain 8737 chr4 191154276 + 43508405 43508506 L1PA6 6164 + 6061 6162 166992 101 chain 10054 chr4 191154276 + 43513294 43513423 THE1B 368 - 237 367 160305 12 2 0 5 0 3 110 chain 98091 chr4 191154276 + 43514753 43515981 L1PA7 6471 - 20 1257 37258 319 0 1 40 0 1 437 9 10 15 0 5 97 0 1 39 1 0 42 1 2 94 2 1 5 0 1 127 chain 91772 chr4 191154276 + 43528530 43529533 L1PA4 6152 - 795 1798 39039 1003 chain 70077 chr4 191154276 + 43529539 43530325 L1PA4 6152 + 5365 6151 48359 786 chain 71738 chr4 191154276 + 43538554 43539569 LTR12 884 + 0 869 47595 24 1 0 317 42 1 34 2 0 61 0 1 175 103 0 256 chain 3548 chr4 191154276 + 43538896 43538938 LTR12 884 + 275 317 123496 42 chain 36821 chr4 191154276 + 43569937 43570486 MLT2A2 560 - 2 560 73779 144 4 15 91 6 5 84 52 51 168 chain 8332 chr4 191154276 + 43576946 43577037 L1PA4 6152 - 2563 2654 169211 91 chain 228525 chr4 191154276 + 43577038 43579603 L1PA4 6152 + 3587 6151 17387 1865 1 0 699 chain 21572 chr4 191154276 + 43594308 43594725 L1PA15 4387 + 3941 4356 121874 23 1 0 119 41 42 5 1 0 55 1 0 19 9 19 44 9 6 43 26 19 21 chain 16368 chr4 191154276 + 43601277 43601580 MER51B 395 - 1 251 137290 126 0 3 55 14 14 11 1 0 11 0 2 5 58 1 22 chain 12522 chr4 191154276 + 43603499 43603633 L1HS 6032 - 2 136 150148 134 chain 83855 chr4 191154276 + 43607568 43608588 L1PA6 6164 + 5131 6148 41965 263 0 2 180 12 0 178 0 1 78 0 1 83 0 5 226 chain 266179 chr4 191154276 + 43613672 43616644 L1PA3long 6157 - 0 2977 15382 258 0 1 1122 0 1 481 0 2 536 0 1 575 chain 26266 chr4 191154276 + 43623499 43623851 L1PA15 4387 + 2589 2941 98953 7 1 0 112 1 2 231 chain 2866 chr4 191154276 + 43637974 43638031 MER63D 473 - 31 88 227575 11 0 12 7 12 0 27 chain 15574 chr4 191154276 + 43643295 43643563 Tigger2 2703 + 2326 2596 139661 48 56 58 164 chain 539811 chr4 191154276 + 43656367 43662508 L1PA4 6152 + 0 6151 2845 286 0 1 272 0 1 21 0 1 1793 0 1 465 0 1 672 1 2 170 1 2 610 0 1 153 0 3 1185 1 0 511 chain 138849 chr4 191154276 + 43674192 43675851 LTR12C 1709 + 0 1709 26340 309 0 1 4 1 0 498 0 40 242 0 1 16 1 0 6 2 0 107 0 4 212 0 9 187 1 0 73 chain 262321 chr4 191154276 + 43693476 43726149 L1PA4 6152 - 1 3524 15569 258 0 1 535 29157 0 1002 0 4 855 0 1 135 0 1 731 chain 150195 chr4 191154276 + 43697135 43698782 L1PA3long 6157 + 4512 6157 24589 284 0 2 318 1 0 756 3 0 285 chain 61578 chr4 191154276 + 43726157 43726880 L1PA4 6152 + 5405 6132 52081 595 3 1 6 0 2 72 0 4 47 chain 32380 chr4 191154276 + 43731460 43731853 L1PA5 6144 + 5755 6142 80223 204 0 1 29 2 0 146 5 0 7 chain 163089 chr4 191154276 + 43745005 43746860 L1PA5 6144 - 1270 3135 22931 34 0 6 1101 0 1 167 0 3 553 chain 114520 chr4 191154276 + 43746860 43748148 L1PA5 6144 + 4856 6144 32825 1288 chain 4284 chr4 191154276 + 43801519 43801576 L1MA1 4479 + 386 446 203424 21 0 3 36 chain 22352 chr4 191154276 + 43815378 43815652 AluSp 311 - 23 311 118691 131 0 14 143 chain 63312 chr4 191154276 + 43818713 43819534 L1PA8 5853 - 5 819 51314 78 11 10 19 2 1 47 1 0 14 5 4 67 5 3 45 1 0 526 chain 137203 chr4 191154276 + 43819672 43821141 L1HS 6032 - 0 1469 26602 1469 chain 11963 chr4 191154276 + 43834529 43834698 MER4E1 777 + 599 769 152355 48 9 10 112 chain 276599 chr4 191154276 + 43858842 43862209 L1PA6 6164 - 2 3377 14837 43 1 7 96 4 5 273 4 0 411 4 7 4 0 1 608 1 0 115 0 2 527 1 2 81 7 0 456 0 1 73 0 1 176 1 4 70 22 22 60 0 1 329 chain 36196 chr4 191154276 + 43881713 43882120 L1PA3long 6157 + 5750 6157 74632 148 1 0 116 0 1 142 chain 9909 chr4 191154276 + 43885907 43886020 MER4A1 472 - 359 472 161027 113 chain 522823 chr4 191154276 + 43893558 43899657 L1PA5 6144 - 10 6141 4885 490 0 18 232 1 4 92 1 5 809 2 4 175 0 1 29 6 7 359 1 0 76 0 6 648 2 4 294 0 2 148 1 0 1147 0 1 412 9 0 171 0 1 270 1 2 242 0 1 481 chain 183271 chr4 191154276 + 43905964 43908734 HUERS-P2-int 2744 + 15 2715 20653 39 1 0 26 14 11 50 5 4 18 39 28 71 21 15 13 43 31 6 1 0 55 9 0 34 4 7 10 10 8 20 17 0 16 2 1 109 15 17 197 9 11 183 1 0 299 0 1 389 0 4 157 0 1 7 8 7 376 0 1 4 37 36 162 0 2 71 5 0 6 11 7 17 1 0 12 6 5 5 0 1 11 25 25 15 1 0 40 3 0 25 9 8 9 2 0 6 2 0 11 chain 60926 chr4 191154276 + 43921522 43922343 L1PA8 5853 - 0 827 52377 48 0 2 5 0 4 20 17 16 7 1 0 7 1 0 52 1 0 13 2 1 70 2 0 44 1 0 372 15 22 92 0 1 51 chain 48756 chr4 191154276 + 43922343 43922920 L1PA8 5853 + 4408 4987 59847 454 0 1 91 0 1 32 chain 22150 chr4 191154276 + 43944350 43944674 L1PA16 3655 + 2664 2989 119590 11 2 1 81 1 0 4 0 1 81 7 8 52 1 0 79 0 2 5 chain 47320 chr4 191154276 + 43953553 43954121 L1P1 4361 + 584 1156 60956 119 0 1 72 0 1 4 1 0 163 0 4 62 1 0 146 chain 34962 chr4 191154276 + 44032214 44032686 LTR15 485 - 7 485 76245 19 4 5 12 2 0 5 1 0 98 1 0 31 0 3 26 0 4 32 0 3 5 3 0 84 0 2 149 chain 268624 chr4 191154276 + 44051320 44054301 L1PA3long 6157 + 3175 6156 15255 2981 chain 11920 chr4 191154276 + 44058820 44059090 LTR35A 463 + 14 237 152516 29 12 0 20 1 0 17 49 8 28 23 34 19 2 0 40 2 0 28 chain 29934 chr4 191154276 + 44078897 44082197 MER9a1 513 - 70 474 85010 36 0 1 144 2897 0 60 0 2 123 2 0 38 chain 46164 chr4 191154276 + 44093878 44094512 PABL_B 668 + 26 660 61884 326 1 0 193 48 49 66 chain 25383 chr4 191154276 + 44099568 44099870 L1PA7 6471 + 6168 6470 102766 302 chain 39866 chr4 191154276 + 44102701 44103163 LTR2 463 - 0 463 69511 428 0 1 34 chain 22169 chr4 191154276 + 44124269 44124523 L1PA5 6144 - 2279 2535 119500 182 0 2 72 chain 136120 chr4 191154276 + 44124525 44126096 L1PA5 6144 + 3867 6128 26813 207 5 590 773 0 102 145 0 2 412 0 1 29 chain 37228 chr4 191154276 + 44139758 44140227 L1PA7 6471 + 5997 6465 73198 283 2 0 18 3 4 18 0 2 137 2 0 6 chain 5861 chr4 191154276 + 44146662 44146823 L1PB1 5432 + 5287 5427 186575 9 1 0 4 2 0 11 9 0 10 13 10 15 2 0 46 1 0 12 7 6 12 2 0 5 chain 109521 chr4 191154276 + 44169382 44170631 SVA_B 1603 + 44 1603 34313 397 0 192 209 1 121 13 1 0 14 1 0 613 chain 130636 chr4 191154276 + 44183220 44184802 SVA_C 1631 + 1 1612 27936 20 8 0 13 3 1 411 1 0 200 3 0 62 14 11 131 12 61 5 2 0 7 1 2 25 1 0 68 1 0 594 chain 87769 chr4 191154276 + 44193024 44194158 MER11A 1151 + 0 1151 40458 79 0 8 202 8 5 96 0 1 52 0 1 116 1 0 279 17 24 109 0 1 114 1 0 24 6 10 30 chain 40145 chr4 191154276 + 44206255 44206717 LTR2 463 + 0 463 69116 368 0 1 94 chain 110952 chr4 191154276 + 44227720 44229444 L1PA8 5853 - 0 1384 33946 91 335 0 20 5 4 37 1 0 19 1 0 74 2 0 44 1 0 138 0 1 337 0 1 74 8 7 537 chain 17099 chr4 191154276 + 44231849 44232047 L1PA7 6471 - 4 210 135318 139 0 8 59 chain 8336 chr4 191154276 + 44232073 44232169 MER50B 698 + 556 652 169199 96 chain 4619 chr4 191154276 + 44249937 44250015 L1MB1 2102 + 1694 1769 199411 44 1 0 9 9 7 15 chain 548290 chr4 191154276 + 44266477 44272568 L1PA3long 6157 + 63 6157 1660 323 4 0 2786 1 0 8 0 1 81 0 1 139 0 1 951 0 4 443 0 1 1355 chain 39755 chr4 191154276 + 44273499 44273976 MER9a3 513 + 15 494 69679 95 0 1 145 1 0 177 2 3 27 0 1 30 chain 3626 chr4 191154276 + 44276363 44276403 MADE1 96 + 6 46 213216 40 chain 156026 chr4 191154276 + 44285725 44287639 L1PA7 6471 + 4540 6461 23857 409 2 0 131 0 1 76 1 8 277 0 1 177 2 1 692 8 9 139 chain 253072 chr4 191154276 + 44302735 44305531 L1PA3long 6157 - 0 2796 16076 2796 chain 29941 chr4 191154276 + 44319241 44319555 AluYb8 318 - 4 318 84992 314 chain 11619 chr4 191154276 + 44319638 44319777 MER85 139 + 0 139 153813 139 chain 13409 chr4 191154276 + 44325926 44326074 L1PA2 6032 + 5885 6032 146675 134 1 0 13 chain 86194 chr4 191154276 + 44359933 44361302 L1PA7 6471 - 17 1122 41078 146 25 27 323 0 1 44 0 1 96 0 1 6 278 0 163 6 8 21 0 3 11 7 11 243 chain 10753 chr4 191154276 + 44380345 44380473 L1PA5 6144 + 6004 6130 157189 9 2 0 117 chain 59589 chr4 191154276 + 44391873 44392690 L1PB1 5432 - 675 1490 53057 52 0 2 82 10 6 93 0 1 302 0 1 6 8 2 42 7 11 51 6 0 39 6 11 27 0 2 41 1 0 44 chain 31937 chr4 191154276 + 44392698 44393331 L1PB1 5432 + 4763 5422 80955 66 54 0 187 0 108 14 48 40 42 2 1 15 1 0 24 1 2 28 29 18 18 25 20 24 1 0 22 2 1 11 1 0 18 chain 30014 chr4 191154276 + 44397870 44398350 MER1A 529 - 9 462 84758 46 23 19 31 19 3 278 17 16 18 1 0 4 5 0 38 chain 29752 chr4 191154276 + 44421528 44421872 L1PA6 6164 + 5815 6159 85640 344 chain 304933 chr4 191154276 + 44475434 44479391 L1PA7 6471 + 3 6465 13210 162 51 51 107 8 9 78 1 2 611 3 4 725 0 1 238 0 2 7 5 1 32 3 4 442 72 10 144 6 0 239 1 2571 11 16 0 160 0 3 127 1 2 257 0 8 253 0 2 41 2 3 19 0 1 135 chain 130365 chr4 191154276 + 44498436 44500000 L1PA5 6144 - 14 1568 28000 134 0 7 695 2 0 510 21 5 6 0 1 196 chain 368206 chr4 191154276 + 44500000 44504531 L1P2 5180 - 591 5163 11151 225 0 4 405 0 1 340 0 2 224 0 1 97 11 0 265 0 1 19 2 1 297 0 5 228 0 1 577 0 1 939 0 29 135 2 1 4 1 0 58 14 10 122 0 1 65 2 1 15 1 0 8 1 0 258 3 2 97 1 0 6 18 32 44 4 8 43 chain 39586 chr4 191154276 + 44507312 44507730 L1HS 6032 - 0 418 69908 418 chain 29338 chr4 191154276 + 44509394 44509703 AluYg6 310 + 0 309 87360 309 chain 49967 chr4 191154276 + 44568580 44569186 L1PA7 6471 + 5852 6454 59043 153 11 6 308 3 4 131 chain 514328 chr4 191154276 + 44595133 44601246 L1PA5 6144 + 0 6144 5740 135 10 24 655 1 18 162 0 1 142 40 32 1144 2 1 558 10 21 266 5 0 1120 0 2 373 1 0 640 1 0 128 0 1 667 0 1 53 chain 200082 chr4 191154276 + 44603750 44606061 L1PA5 6144 - 13 2324 19203 133 14 12 1286 1 2 39 2 1 377 0 2 459 chain 25662 chr4 191154276 + 44606061 44606352 L1PA5 6144 + 3489 3780 100711 291 chain 13678 chr4 191154276 + 44639625 44639907 L1PB1 5432 - 5 262 145677 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 10 33 21 16 1 0 40 11 10 9 2 1 50 chain 9114 chr4 191154276 + 44640429 44640540 L1P5 443 + 7 118 164994 111 chain 3917 chr4 191154276 + 44675748 44675791 MER67A 545 + 81 124 208599 43 chain 9585 chr4 191154276 + 44726335 44726481 L1PB4 2604 - 291 439 162664 14 17 19 115 chain 39823 chr4 191154276 + 44734435 44734992 L1PA16 3655 + 3026 3577 69588 178 1 0 34 13 12 23 1 0 18 12 10 238 1 0 38 chain 518789 chr4 191154276 + 44746006 44752149 L1PA5 6144 - 1 6144 5293 15 3 0 1012 0 1 100 0 1 1001 2 0 803 0 1 234 0 1 847 0 2 416 0 1 490 0 3 44 15 6 86 11 14 203 49 49 634 24 25 154 chain 23955 chr4 191154276 + 44753872 44754205 L1PA10 4194 - 33 358 110590 10 2 1 9 2 0 25 3 0 34 2 0 246 chain 29271 chr4 191154276 + 44792005 44792518 L1MA1 4479 - 324 822 87687 4 1 0 9 1 0 32 1 0 3 2 0 29 1 0 126 3 0 5 1 0 85 19 16 20 2 1 61 42 43 6 1 0 53 1 0 5 chain 32571 chr4 191154276 + 44822331 44822795 LTR2 463 - 0 463 79900 24 1 0 28 1 0 25 7 8 25 1 2 194 17 17 82 2 1 57 chain 146106 chr4 191154276 + 44822822 44825053 HERVE_a-int 7009 - 19 2201 25145 22 34 26 15 7 5 31 53 47 28 1 0 19 51 49 13 3 0 35 2 1 50 1 0 10 1 0 27 9 7 44 1 0 21 1 0 37 1 0 7 2 0 5 1 0 16 2 1 9 1 0 32 1 0 44 2 1 93 0 12 30 2 0 80 1 0 32 2 0 57 1 0 5 1 0 13 1 0 102 2 0 257 2 1 10 3 2 87 1 0 28 3 1 31 1 0 11 1 0 73 2 1 9 1 0 72 0 1 67 9 0 66 6 8 52 0 1 7 1 0 8 3 4 127 1 0 5 0 1 226 chain 3402 chr4 191154276 + 44826777 44826813 L1PA5 6144 + 5853 5889 217030 36 chain 21823 chr4 191154276 + 44826813 44827060 L1PA5 6144 + 5891 6138 120929 247 chain 19708 chr4 191154276 + 44827060 44827295 L1PA3long 6157 + 5928 6156 127847 75 7 0 153 chain 67893 chr4 191154276 + 44827611 44828450 Harlequin-int 5206 - 4243 5081 49292 115 1 2 111 1 0 252 1 0 111 1 0 236 0 1 10 chain 34880 chr4 191154276 + 44830202 44830661 LTR2 463 - 1 463 76364 23 1 0 28 1 0 25 13 14 242 0 3 48 0 1 78 chain 47364 chr4 191154276 + 44833962 44834588 L1PA8 5853 + 5233 5853 60921 283 1 2 48 1 0 42 2 0 68 17 15 49 2 1 22 1 0 90 chain 27425 chr4 191154276 + 44855017 44855381 THE1B 368 + 0 357 94895 172 2 1 5 0 1 65 7 0 113 chain 540846 chr4 191154276 + 44881477 44887614 L1PA4 6152 + 2 6151 2683 569 0 1 4 1 0 132 1 2 34 1 0 297 0 2 118 0 3 72 0 1 167 0 1 2531 1 4 514 0 1 78 0 1 1617 chain 2702 chr4 191154276 + 44893936 44893972 L1MA2 4263 - 4216 4251 230205 28 1 0 7 chain 18583 chr4 191154276 + 44939285 44939501 L1PA2 6032 - 2 218 131278 139 7 0 11 0 7 59 chain 18513 chr4 191154276 + 44939509 44939708 L1PA3long 6157 + 5748 5947 131465 199 chain 3444 chr4 191154276 + 44944858 44944896 MLT1D 503 + 465 503 216295 38 chain 32207 chr4 191154276 + 44965942 44966393 LTR3B_ 500 - 43 500 80512 51 26 27 34 0 3 38 0 1 139 18 19 145 chain 27101 chr4 191154276 + 44975567 44975967 MLT2A1 477 + 0 376 95938 96 2 3 70 4 1 5 0 8 21 4 5 122 36 5 40 chain 109850 chr4 191154276 + 44976975 44978149 L1PA2 6032 - 1274 2448 34231 1174 chain 117315 chr4 191154276 + 44978149 44979429 L1PA2 6032 + 4752 6032 32020 1280 chain 26087 chr4 191154276 + 45003592 45003947 THE1A 353 - 0 353 99682 170 3 4 48 2 0 21 2 1 109 chain 20381 chr4 191154276 + 45009054 45009328 AluY 311 + 10 310 125956 45 1 2 78 14 41 125 2 0 9 chain 39620 chr4 191154276 + 45019228 45019762 LTR10F 562 + 0 562 69864 127 0 28 77 6 9 20 17 16 198 2 0 87 chain 36865 chr4 191154276 + 45032597 45033059 L1PA7 6471 + 5997 6459 73705 310 18 18 134 chain 8819 chr4 191154276 + 45040593 45040697 L1PA4 6152 + 6048 6152 166560 104 chain 45466 chr4 191154276 + 45044064 45044579 MER9a3 513 + 0 513 62529 456 2 0 57 chain 389229 chr4 191154276 + 45045902 45050521 HERVK9-int 4720 + 36 4720 10473 13 8 5 4 1 0 57 0 1 8 1 0 9 1 0 29 1 0 206 0 1 904 0 1 236 0 1 433 1 0 521 1 0 4 0 1 674 4 0 157 0 4 938 0 3 135 0 66 273 chain 43274 chr4 191154276 + 45050521 45051041 MER9a3 513 + 0 513 65086 12 13 6 495 chain 223983 chr4 191154276 + 45053575 45056157 L1P1 4361 + 1 2578 17655 259 1 0 262 4 0 2056 chain 127892 chr4 191154276 + 45063151 45064742 L1PA7 6471 + 4856 6457 28599 368 1 0 125 1 2 5 1 0 246 5 9 4 1 0 95 1 0 203 10 11 10 0 1 373 1 8 141 chain 492146 chr4 191154276 + 45107271 45113263 L1PA6 6164 - 2 6164 7261 807 0 2 29 7 11 664 6 0 165 0 1 454 0 135 191 0 1 178 0 1 333 0 1 851 11 4 290 4 3 4 0 1 114 1 13 367 0 1 404 0 10 310 17 0 12 3 20 638 0 15 132 chain 2713 chr4 191154276 + 45127043 45127074 L1PA4 6152 + 5913 5944 230045 31 chain 14050 chr4 191154276 + 45127078 45127236 L1PA4 6152 + 5994 6152 144378 158 chain 23269 chr4 191154276 + 45135907 45136243 THE1B 368 - 12 367 114345 28 1 0 9 5 13 97 11 9 28 1 0 105 8 23 43 chain 19256 chr4 191154276 + 45152220 45152452 L1PA7 6471 + 6237 6469 129360 232 chain 262927 chr4 191154276 + 45169187 45173068 L1PA8 5853 - 17 3501 15538 73 1 0 20 1 0 135 2 0 44 1 0 273 35 17 64 16 6 116 4 8 71 0 2 215 0 1 803 0 1 10 1 0 13 0 1 361 6 5 10 0 1 80 11 12 10 1 2 17 370 5 224 1 2 13 8 0 119 0 1 92 1 0 101 4 1 392 0 1 162 chain 146496 chr4 191154276 + 45208913 45211326 SVA_A 1864 + 25 1863 25092 387 1 5 133 576 43 66 3 0 135 9 6 74 3 0 12 1 0 27 2 0 196 0 36 45 76 0 612 0 6 55 chain 23643 chr4 191154276 + 45209434 45209998 SVA_A 1864 + 626 768 57282 93 8 5 39 419 0 5 chain 3186 chr4 191154276 + 45210583 45210659 SVA_A 1864 + 1227 1301 57282 47 10 8 19 chain 26150 chr4 191154276 + 45223059 45223361 AluYk4 311 + 8 304 99401 282 2 0 6 4 0 8 chain 55215 chr4 191154276 + 45226403 45227185 THE1B-int 1605 + 0 809 55575 113 0 3 125 0 3 184 1 26 21 6 7 162 2 1 108 43 39 17 chain 94425 chr4 191154276 + 45261047 45262097 L1PA3long 6157 - 2 1045 38228 837 7 0 206 chain 57910 chr4 191154276 + 45262097 45262743 L1PA3long 6157 + 4467 5114 53972 237 0 1 409 chain 62823 chr4 191154276 + 45268336 45269073 L1PA5 6144 + 5375 6129 51530 165 0 10 432 4 11 136 chain 31824 chr4 191154276 + 45290051 45290552 MLT2A1 477 + 8 477 81128 46 1 0 60 1 0 5 0 1 22 0 1 26 0 4 214 77 41 49 chain 8266 chr4 191154276 + 45301722 45301851 MER30 238 - 19 163 169584 29 3 0 60 14 32 23 chain 123994 chr4 191154276 + 45305415 45306799 L1PA4 6152 - 0 1396 29706 509 2 12 250 0 1 437 0 1 186 chain 9699 chr4 191154276 + 45314052 45314363 L1PB 1623 + 1315 1586 162088 102 174 136 22 2 0 11 chain 2650 chr4 191154276 + 45332323 45332360 L1MA8 2339 - 86 121 231011 20 2 0 15 chain 83995 chr4 191154276 + 45350063 45351104 L1PA8A 6298 + 5244 6290 41907 38 3 4 203 1 4 38 1 0 37 0 2 720 chain 7966 chr4 191154276 + 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1 4 2 1 276 0 1 39 0 4 145 7 6 6 0 4 50 0 2 249 14 10 478 4 8 26 1 0 12 3 0 44 1 3 27 1 2 64 4 3 36 1 0 33 6 5 263 9 0 10 chain 20600 chr4 191154276 + 45870163 45870465 AluYb8 318 + 17 318 125296 25 69 68 208 chain 3375 chr4 191154276 + 45870811 45870906 MIRb 242 - 111 207 217572 27 43 44 25 chain 14466 chr4 191154276 + 45882941 45883228 L1PB1 5432 - 10 273 142999 18 1 0 12 1 0 22 1 0 22 2 0 14 11 8 18 32 21 6 1 0 44 2 1 17 1 0 51 2 0 9 chain 17337 chr4 191154276 + 45890654 45890861 L1PA3long 6157 - 5 206 134689 102 9 3 96 chain 67437 chr4 191154276 + 45917552 45918312 L1P1 4361 - 980 1754 49431 565 0 14 195 chain 109092 chr4 191154276 + 45918312 45919537 L1PA5 6144 + 4899 6123 34422 395 1 0 829 chain 24300 chr4 191154276 + 45937834 45938153 L1PA7 6471 - 4 331 108657 8 2 0 8 4 3 132 0 1 30 7 17 128 chain 7992 chr4 191154276 + 45958076 45958163 L1PA5 6144 - 6 93 171105 87 chain 30998 chr4 191154276 + 45973732 45974102 L1PA7 6471 - 794 1161 82515 56 1 0 251 0 1 9 3 0 50 chain 55126 chr4 191154276 + 45974112 45974852 L1PA7 6471 + 5691 6433 55625 11 2 1 7 0 1 128 5 6 4 1 0 160 1 3 296 5 6 6 1 0 113 chain 60708 chr4 191154276 + 45979420 45980169 L1PA7 6471 - 2 746 52469 8 5 0 736 chain 28631 chr4 191154276 + 45980169 45980526 L1PA7 6471 + 5349 5705 90601 272 1 0 84 chain 27905 chr4 191154276 + 45993707 45994005 AluYb8 318 - 8 318 93349 161 0 12 137 chain 56236 chr4 191154276 + 45999334 46000000 L1PA7 6471 - 1 666 55004 12 2 0 321 0 1 331 chain 311760 chr4 191154276 + 46001706 46005728 L1P3 4156 - 20 4156 12935 21 2 1 9 3 1 708 0 6 335 6 8 11 1 2 105 4 1 54 0 54 181 20 1 28 0 9 372 0 25 234 7 8 133 0 3 432 0 1 31 7 11 84 0 1 241 5 16 591 3 27 54 0 1 8 9 8 69 2 1 40 36 34 176 chain 18419 chr4 191154276 + 46008518 46008764 L1PA6 6164 - 3 263 131715 60 6 13 170 0 7 10 chain 208694 chr4 191154276 + 46028969 46032050 L1PB1 5432 + 2296 5413 18591 286 0 3 51 0 1 188 0 1 16 2 1 176 6 1 60 6 2 111 0 4 29 34 39 61 0 1 131 0 97 64 5 10 92 0 5 64 0 1 157 0 6 70 0 12 76 0 1 106 10 4 405 13 11 22 2 0 143 13 11 266 86 33 23 1 0 10 30 23 50 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 8 5 14 6 4 23 1 0 15 5 4 12 1 0 9 chain 94554 chr4 191154276 + 46056003 46057005 L1HS 6032 - 1141 2143 38057 1002 chain 106271 chr4 191154276 + 46057005 46058134 L1HS 6032 + 4904 6032 35188 976 1 0 152 chain 72081 chr4 191154276 + 46063895 46064695 L1PA3long 6157 - 0 801 47126 333 0 1 467 chain 105052 chr4 191154276 + 46064695 46065888 L1PA3long 6157 + 4157 5338 35494 5 2 0 735 22 4 117 0 7 281 0 1 31 chain 19486 chr4 191154276 + 46079112 46079330 L1PA4 6152 + 5936 6151 128701 209 3 0 6 chain 4559 chr4 191154276 + 46088895 46088976 MER41A 554 - 90 157 200118 14 18 4 49 chain 27355 chr4 191154276 + 46150728 46151028 AluYb8 318 - 17 318 95097 169 1 0 101 0 2 29 chain 11374 chr4 191154276 + 46151028 46151168 MLT2B4 540 + 2 142 154803 140 chain 26953 chr4 191154276 + 46153678 46153960 AluYg6 310 + 19 301 96438 282 chain 26967 chr4 191154276 + 46158634 46158999 MLT2A1 477 + 7 375 96379 80 3 2 51 2 3 25 1 5 151 1 0 51 chain 184007 chr4 191154276 + 46159064 46161459 HERVL-int 5654 + 0 5654 20588 104 0 1 4 1 0 396 4 5 145 6 1 184 0 3247 184 0 1 10 4 15 604 0 3 321 9 6 198 1 2 152 0 3 68 chain 74903 chr4 191154276 + 46167586 46168445 L1P1 4361 - 66 927 46060 147 1 0 659 0 3 52 chain 24909 chr4 191154276 + 46168445 46168724 L1PA5 6144 + 5861 6140 105284 279 chain 41213 chr4 191154276 + 46171603 46172083 L1PA4 6152 + 5665 6143 67635 233 2 1 98 1 0 146 chain 4196 chr4 191154276 + 46178380 46178429 MSTA 426 + 244 293 204592 49 chain 16874 chr4 191154276 + 46183959 46184144 L1PA3long 6157 + 5972 6157 135907 185 chain 23321 chr4 191154276 + 46187261 46187518 L1PA3long 6157 + 5897 6154 114087 257 chain 233102 chr4 191154276 + 46215677 46218303 L1PA4 6152 + 3518 6143 17138 407 0 1 1739 3 0 147 0 1 330 chain 35919 chr4 191154276 + 46224239 46224677 L1PA7 6471 - 7 447 74991 140 0 1 38 0 1 260 chain 3981 chr4 191154276 + 46224682 46224726 MER44D 709 + 557 601 207670 44 chain 178911 chr4 191154276 + 46233407 46235414 L1PA4 6152 - 6 2017 21081 611 0 1 161 0 1 502 0 1 490 0 1 243 chain 40149 chr4 191154276 + 46237623 46238090 L1PA3long 6157 - 5 473 69108 17 0 1 115 0 7 13 7 0 315 chain 49491 chr4 191154276 + 46238090 46238636 L1PA3long 6157 + 5132 5678 59395 546 chain 3349 chr4 191154276 + 46269848 46270036 Tigger4a 237 + 157 228 218074 5 2 0 14 112 0 11 11 8 33 chain 12968 chr4 191154276 + 46274919 46275074 L1PA7 6471 - 6 161 148359 155 chain 37199 chr4 191154276 + 46289397 46289806 L1PA3long 6157 + 5748 6157 73238 409 chain 3884 chr4 191154276 + 46293841 46293882 MLT2A2 560 + 519 560 209120 41 chain 398198 chr4 191154276 + 46293914 46299102 HERVL-int 5654 + 32 5654 10163 305 1 0 273 12 12 25 0 369 22 0 2 669 1 0 86 0 6 12 0 1 4 1 0 64 13 20 166 0 1 188 0 1 415 21 22 90 2 13 79 5 15 361 6 5 29 4 2 88 0 4 187 0 8 134 3 2 573 1 0 463 0 1 256 0 12 140 0 4 43 32 14 7 0 5 108 0 1 37 0 2 91 0 14 171 chain 25929 chr4 191154276 + 46307141 46307430 L1PA4 6152 + 5852 6141 100303 289 chain 11286 chr4 191154276 + 46330644 46330774 L1PA2 6032 - 2 129 155108 13 3 0 114 chain 90660 chr4 191154276 + 46349941 46350952 L1PA4 6152 + 5140 6151 39403 1011 chain 21901 chr4 191154276 + 46364215 46364510 THE1B 368 + 84 368 120616 89 2 1 113 11 1 80 chain 166016 chr4 191154276 + 46378754 46380686 SVA_D 2077 + 0 2073 22512 59 0 2 43 0 27 55 0 8 531 0 3 33 3 0 142 0 84 43 1 0 6 35 10 6 1 0 41 1 0 259 0 49 54 2 1 617 chain 3157 chr4 191154276 + 46379670 46379705 SVA_D 2077 + 1137 1172 81251 35 chain 492783 chr4 191154276 + 46406702 46412820 L1PA6 6164 + 0 6160 7233 154 5 0 7 0 5 156 1 2 125 8 0 120 1 0 118 3 1 99 0 17 446 1 0 28 0 4 314 0 1 4 1 0 127 1 0 102 0 1 42 0 1 459 8 9 543 0 25 279 0 1 437 1 2 435 1 0 281 1 3 5 2 0 37 0 1 4 1 0 235 0 1 121 0 1 1079 0 1 158 0 2 159 1 0 8 chain 160926 chr4 191154276 + 46423518 46425995 L1PB1 5432 - 18 2291 23208 20 7 6 18 1 0 24 2 0 5 53 41 4 1 0 15 1 0 45 5 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 21 3 0 12 163 6 4 0 1 226 39 0 7 0 39 10 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97 3 0 29 4 0 179 chain 23262 chr4 191154276 + 46616200 46616557 THE1A 353 - 0 353 114372 151 2 0 70 1 0 7 18 19 12 1 0 39 10 11 31 2 0 13 chain 14340 chr4 191154276 + 46619242 46619428 MER107 203 - 8 200 143427 16 1 7 169 chain 5243 chr4 191154276 + 46623718 46623791 L1PREC2 3366 - 639 711 192592 7 1 0 65 chain 28033 chr4 191154276 + 46638035 46638331 AluYa5 310 - 14 310 92882 296 chain 30832 chr4 191154276 + 46638963 46639430 MLT2A1 477 - 0 462 82806 46 4 0 16 2 0 10 4 0 11 14 15 77 5 6 6 1 0 117 1 5 153 chain 315331 chr4 191154276 + 46639445 46643386 HERVL-int 5654 - 0 4030 12792 118 0 10 20 4 9 4 0 1 77 0 3 4 0 1 123 1 21 9 1 2 154 6 7 49 0 8 46 1 0 180 0 1 73 0 17 513 0 6 21 0 6 70 3 0 67 3 0 619 1 4 783 0 1 19 0 16 494 0 1 181 0 1 109 5 6 40 7 0 136 chain 59626 chr4 191154276 + 46663487 46664160 L1PA4 6152 - 0 678 53038 10 0 6 140 1 0 522 chain 209334 chr4 191154276 + 46665972 46668353 L1P1 4361 - 20 2397 18539 12 2 1 23 1 0 155 1 0 261 0 1 900 0 1 109 1 2 589 4 0 323 chain 18850 chr4 191154276 + 46668353 46668562 L1P1 4361 + 1757 1966 130514 209 chain 124615 chr4 191154276 + 46672947 46674395 L1PA6 6164 - 2 1452 29503 207 1 0 849 0 1 114 0 2 277 chain 99110 chr4 191154276 + 46679698 46680793 L1PA3long 6157 - 0 1095 36997 15 3 0 970 0 3 107 chain 17874 chr4 191154276 + 46680793 46680990 L1PA3long 6157 + 4865 5062 133182 197 chain 5029 chr4 191154276 + 46701456 46701724 LTR12C 1709 + 650 718 194843 21 200 0 47 chain 42265 chr4 191154276 + 46709559 46710127 LTR12_ 688 - 2 688 66314 59 1 0 91 0 117 50 1 0 92 31 34 243 chain 22824 chr4 191154276 + 46710743 46711102 THE1B 368 + 0 368 116476 101 0 1 6 7 6 55 1 0 29 42 52 118 chain 413936 chr4 191154276 + 46723531 46729878 L1PA6 6164 - 3 6164 9703 14 1 2 139 3 4 39 0 8 269 15 7 565 0 1 975 0 1 109 961 0 133 0 1 187 1 3 183 1 0 254 0 3 54 0 203 424 0 4 20 307 0 40 5 6 110 0 4 50 13 0 23 0 1 143 1 0 23 0 1 133 60 16 55 0 1 363 0 3 5 0 2 140 0 5 197 15 0 132 0 921 185 chain 4705 chr4 191154276 + 46728726 46728780 L1PA6 6164 - 2105 2159 197442 54 chain 136668 chr4 191154276 + 46753805 46755389 L1PA5 6144 - 1373 2956 26698 39 3 0 1059 0 2 483 chain 115392 chr4 191154276 + 46755389 46756703 L1PA5 6144 + 4792 6129 32647 480 0 1 686 3 25 145 chain 76538 chr4 191154276 + 46761399 46762719 L1PA7 6471 + 5493 6454 45193 121 0 3 226 388 27 406 0 2 7 6 3 166 chain 7780 chr4 191154276 + 46773877 46773987 Tigger4a 237 - 109 211 172422 89 7 0 6 1 0 7 chain 4522 chr4 191154276 + 46784328 46784496 LTR12C 1709 + 819 909 200539 14 104 26 50 chain 3198 chr4 191154276 + 46784342 46784377 LTR12C 1709 + 1033 1068 220968 35 chain 25246 chr4 191154276 + 46789190 46789488 AluSp 311 + 8 306 103495 298 chain 39540 chr4 191154276 + 46795011 46795510 LTR19A 502 - 0 502 69973 10 0 4 187 1 0 301 chain 123561 chr4 191154276 + 46797008 46798333 L1HS 6032 - 794 2119 29853 1325 chain 73597 chr4 191154276 + 46798333 46799122 L1HS 6032 + 5243 6032 46427 789 chain 3740 chr4 191154276 + 46806465 46806507 LTR12C 1709 - 991 1033 211333 42 chain 15921 chr4 191154276 + 46806551 46806761 LTR12C 1709 - 749 940 138607 36 18 0 87 1 0 68 chain 17717 chr4 191154276 + 46815498 46815738 L1PA8 5853 + 5617 5853 133653 61 2 1 10 1 0 51 2 1 19 1 0 93 chain 15198 chr4 191154276 + 46821453 46821691 MER30 238 - 0 238 140781 27 15 12 82 14 17 100 chain 91005 chr4 191154276 + 46826683 46828116 L1PA14 3548 + 2060 3465 39290 36 5 6 139 1 0 131 6 1 11 1 0 4 5 8 48 2 1 45 0 4 25 0 1 16 1 0 151 3 1 124 0 1 107 1 0 4 17 15 13 2 0 48 2 0 5 2 0 109 3 1 15 2 0 6 4 3 19 0 1 62 1 0 14 9 10 87 1 0 8 5 1 38 4 2 11 1 0 6 1 0 16 1 0 29 7 0 8 1 4 10 chain 9848 chr4 191154276 + 46833536 46833688 LTR12C 1709 + 932 1135 149195 105 9 11 17 10 59 11 chain 18733 chr4 191154276 + 46833688 46834016 LTR12C 1709 + 650 909 130873 43 40 0 144 1 0 35 30 2 35 chain 68806 chr4 191154276 + 46844420 46845180 L1PA4 6152 - 1 761 48892 760 chain 15831 chr4 191154276 + 46851714 46851898 L1PA4 6152 - 9 193 138848 184 chain 66808 chr4 191154276 + 46874843 46875618 L1PA7 6471 - 3 782 49729 371 1 0 253 0 5 150 chain 20570 chr4 191154276 + 46875688 46875933 L1PA5 6144 - 1 244 125395 8 2 0 235 chain 26256 chr4 191154276 + 46882745 46883023 L1HS 6032 + 5754 6032 98989 278 chain 29838 chr4 191154276 + 46907827 46908145 AluYb8 318 - 0 318 85321 318 chain 17985 chr4 191154276 + 46937619 46937842 L1PA7 6471 + 6243 6464 132904 64 2 3 149 3 0 5 chain 5565 chr4 191154276 + 46939303 46939373 MLT1A 405 + 316 386 189431 70 chain 60316 chr4 191154276 + 46964226 46965301 L1MA1 4479 + 3144 4186 52673 13 2 0 20 4 0 74 1 0 8 4 0 57 5 0 73 3 0 130 2 0 196 1 0 9 20 19 12 1 0 5 1 0 4 1 2 39 7 6 15 1 0 19 1 0 10 26 36 35 1 0 6 0 1 14 1 0 5 3 0 20 36 37 69 1 0 27 2 0 34 43 33 14 chain 24595 chr4 191154276 + 47001821 47002130 LTR45C 530 + 185 495 107022 265 0 1 44 chain 42336 chr4 191154276 + 47026629 47027491 L1PB1 5432 - 28 694 66222 11 1 0 23 1 0 24 2 0 15 1 0 4 1 0 17 29 16 10 8 7 41 1 0 15 2 1 52 0 2 5 11 3 11 1 0 13 1 0 20 1 0 11 185 9 166 0 1 90 1 3 19 0 8 69 chain 3400 chr4 191154276 + 47065508 47065696 Arthur1B 1073 - 798 1002 217078 27 118 133 20 6 7 17 chain 48350 chr4 191154276 + 47080958 47081493 L1P1 4361 - 546 1081 60209 535 chain 46113 chr4 191154276 + 47081493 47082017 L1PA4 6152 + 5615 6143 61934 6 0 4 518 chain 3308 chr4 191154276 + 47109579 47109629 MIR 256 + 98 145 218797 41 3 0 6 chain 28278 chr4 191154276 + 47127572 47127871 AluYa5 310 - 11 310 92007 299 chain 29703 chr4 191154276 + 47180998 47181361 L1PA7 6471 - 15 409 85816 314 0 1 9 4 34 36 chain 16584 chr4 191154276 + 47181361 47181554 L1PA7 6471 + 5873 6065 136703 58 1 0 134 chain 18505 chr4 191154276 + 47204077 47204446 THE1D 372 + 16 372 131484 23 58 47 10 1 0 70 32 34 24 1 0 59 22 20 69 chain 4035 chr4 191154276 + 47229431 47229475 LTR16A 446 - 21 65 206853 44 chain 241280 chr4 191154276 + 47243905 47246668 L1PA5 6144 - 0 2769 16708 787 0 1 315 0 1 269 3 2 422 1 5 540 0 1 426 chain 49563 chr4 191154276 + 47246668 47247233 L1PA5 6144 + 2787 3351 59137 380 1 0 184 chain 389103 chr4 191154276 + 47247956 47253406 L1PB1 5432 - 12 5413 10482 16 6 5 8 1 0 21 1 0 24 2 0 14 8 5 18 20 9 4 1 0 15 1 0 44 1 0 16 2 1 51 2 0 10 17 12 11 5 4 18 1 0 11 114 0 285 6 14 10 13 5 116 0 1 42 0 2 250 0 1 72 4 8 78 2 1 321 3 2 65 0 4 92 5 6 99 7 14 266 5 1 111 3 0 209 1 15 171 1 0 8 1 0 67 0 1 4 1 0 266 5 1 201 0 1 339 5 88 448 24 11 5 2 0 7 1 0 752 0 4 34 0 4 53 16 14 52 4 5 25 0 3 33 12 10 203 6 7 53 5 6 118 chain 4014 chr4 191154276 + 47257698 47257854 MER5A 189 - 35 189 207174 35 97 95 24 chain 72418 chr4 191154276 + 47261903 47262732 L1HS 6032 - 3565 4394 47295 116 1 2 151 1 0 560 chain 220749 chr4 191154276 + 47262733 47265221 L1PA4 6152 + 3655 6152 17832 494 0 3 148 0 5 1440 0 1 406 chain 117947 chr4 191154276 + 47292505 47294046 THE1B-int 1605 + 45 1605 31822 383 3 28 219 0 1 4 0 2 30 1 2 59 1 0 4 0 1 240 6 0 13 3 4 220 4 0 149 1 0 201 chain 553051 chr4 191154276 + 47296133 47302267 L1PA3long 6157 + 0 6157 1061 6 1 0 294 1 0 70 0 2 2804 0 1 114 0 1 447 1 19 399 0 3 1997 chain 3664 chr4 191154276 + 47302652 47302720 L1MA3 4352 - 0 63 212497 20 8 4 11 1 0 28 chain 5163 chr4 191154276 + 47308194 47308255 L1PA7 6471 + 6407 6468 193414 61 chain 53302 chr4 191154276 + 47329855 47330449 L1PA4 6152 - 527 1120 56828 331 1 0 262 chain 41981 chr4 191154276 + 47330449 47330936 L1PA4 6152 + 5656 6143 66648 487 chain 73402 chr4 191154276 + 47353428 47354228 L1PA3long 6157 - 0 800 46835 800 chain 39142 chr4 191154276 + 47354228 47354667 L1P1 4361 + 3427 3866 70549 439 chain 27360 chr4 191154276 + 47354927 47355280 THE1A 353 - 0 353 95076 259 1 0 39 10 11 44 chain 10947 chr4 191154276 + 47360592 47360787 MLT1B 390 - 193 390 156416 73 1 0 55 19 28 14 13 7 20 chain 3356 chr4 191154276 + 47368009 47368044 LTR33 499 + 458 493 217943 35 chain 56351 chr4 191154276 + 47373468 47374345 L1PA11 4918 - 289 1128 54932 19 46 32 11 2 0 13 1 0 15 13 9 10 25 16 15 1 0 17 2 0 65 2 0 13 2 1 61 5 0 159 0 1 17 0 1 4 1 0 107 0 1 171 0 1 80 chain 105296 chr4 191154276 + 47379298 47380635 LTR12C 1709 - 0 1709 35427 84 6 5 21 0 3 36 0 100 19 0 1 212 0 4 68 0 1 37 8 165 99 0 118 268 12 4 105 1 0 57 6 4 298 chain 7273 chr4 191154276 + 47403111 47403240 L1PB3 3668 - 214 345 175632 41 30 32 58 chain 36677 chr4 191154276 + 47416183 47416633 MER4A1 472 - 0 472 73991 226 9 30 146 0 1 69 chain 10325 chr4 191154276 + 47479173 47479286 L1PA2 6032 + 5919 6032 159012 113 chain 3375 chr4 191154276 + 47480661 47480697 L2a 937 + 289 325 217570 36 chain 20815 chr4 191154276 + 47504213 47504466 AluY 311 + 4 262 124550 68 0 3 49 5 6 48 0 1 83 chain 18214 chr4 191154276 + 47545081 47545321 MER44A 345 + 83 323 132301 18 0 4 7 4 0 211 chain 62581 chr4 191154276 + 47552509 47553262 LTR17 781 - 7 781 51635 207 1 2 63 0 19 156 0 1 28 1 2 140 1 0 156 chain 25582 chr4 191154276 + 47577941 47578217 AluYa5 310 - 4 281 101816 272 0 1 4 chain 5626 chr4 191154276 + 47597161 47597226 L1PA5 6144 + 6052 6117 188814 65 chain 28009 chr4 191154276 + 47605043 47605404 THE1C 375 + 0 375 92971 108 1 0 9 7 22 236 chain 20633 chr4 191154276 + 47609201 47609456 AluY 311 + 58 302 125180 74 0 1 161 12 0 8 chain 146637 chr4 191154276 + 47612135 47614191 L1PA11 4918 - 289 2349 25065 18 19 13 5 1 0 10 12 5 11 2 0 13 1 0 11 56 43 11 1 0 19 2 0 63 2 0 12 1 0 70 1 0 8 0 4 56 4 3 6 0 2 56 0 5 377 3 1 12 1 0 322 0 1 100 0 1 350 5 6 35 1 0 67 18 50 142 3 0 10 3 6 136 chain 42042 chr4 191154276 + 47615533 47615987 L1PA2 6032 + 5577 6031 66572 454 chain 78290 chr4 191154276 + 47623869 47624714 L1PA2 6032 - 4 849 44378 845 chain 120103 chr4 191154276 + 47638847 47640406 THE1B-int 1605 + 0 1600 31024 35 0 2 301 1 3 83 0 1 4 3 27 100 0 10 42 0 1 135 23 23 218 0 1 21 9 8 204 1 0 199 0 3 27 9 8 144 chain 20421 chr4 191154276 + 47668975 47669333 THE1B 368 + 0 367 125837 22 0 1 67 24 27 59 62 67 124 chain 11358 chr4 191154276 + 47704940 47705065 L1PA7 6471 - 4 129 154868 125 chain 3293 chr4 191154276 + 47753289 47753327 tRNA-Cys-TGY 72 + 0 38 219134 38 chain 77772 chr4 191154276 + 47755019 47756015 MER11A 1151 - 0 1142 44629 56 14 13 10 0 4 174 0 32 534 0 2 21 0 11 66 2 1 72 1 100 46 chain 31856 chr4 191154276 + 47777251 47777622 L1PA5 6144 - 14 386 81088 304 1 2 66 chain 19426 chr4 191154276 + 47788270 47788504 AluSq2 311 + 1 230 128883 128 5 0 101 chain 8830 chr4 191154276 + 47789660 47789918 L1PB1 5432 - 12 228 166488 16 1 0 6 6 7 21 1 0 20 1 0 5 79 43 6 1 0 12 8 7 41 1 0 15 2 1 16 chain 15778 chr4 191154276 + 47800919 47801122 L1PA16 3655 - 67 267 139026 10 3 0 190 chain 22189 chr4 191154276 + 47806908 47807165 AluY 311 + 37 295 119401 96 0 1 161 chain 178771 chr4 191154276 + 47847091 47849072 L1PA4 6152 + 4139 6136 21098 971 0 15 732 0 1 278 chain 3374 chr4 191154276 + 47873573 47873624 L1MC4 1079 + 446 496 217594 23 4 3 24 chain 504062 chr4 191154276 + 47919065 47925544 L1PA6 6164 - 2 6154 6595 846 0 5 1001 0 11 120 3 0 124 0 1 363 8 5 118 0 1 122 7 9 160 0 1 85 0 1 416 0 1 13 0 1 1291 0 4 650 1 18 70 0 1 36 1 2 114 6 5 117 19 0 299 1 16 53 363 0 72 chain 14001 chr4 191154276 + 47944590 47944792 MER1B 344 + 2 199 144574 55 4 0 24 17 16 102 chain 8309 chr4 191154276 + 47953203 47953331 MER85 139 + 0 138 169346 76 13 23 39 chain 4764 chr4 191154276 + 47991935 47991991 MER11A 1151 + 85 141 197772 56 chain 394003 chr4 191154276 + 47992849 47998047 L1PB1 5432 - 154 5355 10321 42 21 19 43 22 16 11 1 0 9 1 0 24 1 0 13 18 5 33 13 12 286 7 0 137 3 0 670 1 3 223 2 4 22 6 4 118 0 1 4 1 0 67 61 38 414 0 3 168 0 3 44 2 0 344 5 8 68 2 1 71 6 10 9 0 1 148 0 1 66 4 6 404 0 1 42 7 14 12 0 1 4 1 0 210 14 12 69 0 1 196 4 6 282 0 28 71 0 4 169 1 5 33 2 1 90 1 2 375 chain 23930 chr4 191154276 + 48002391 48002683 AluSp 311 - 17 310 110753 152 0 1 140 chain 37567 chr4 191154276 + 48004993 48005465 MER4A1 472 - 0 472 72725 472 chain 80034 chr4 191154276 + 48005480 48006480 LTR13 1007 + 0 1007 43575 381 4 5 80 1 2 180 0 2 33 0 2 130 0 1 98 0 1 60 2 1 31 chain 199302 chr4 191154276 + 48006480 48009819 MER4-int 2692 - 0 2691 19259 10 0 1 5 1 0 108 1 0 136 20 21 130 40 27 132 0 1 43 326 0 57 0 2 239 2 1 86 1 0 185 35 36 24 0 4 204 0 10 304 0 1 5 0 1 28 6 0 27 299 0 22 1 0 34 0 3 87 7 4 242 6 4 5 0 2 178 15 4 36 1 0 118 4 0 26 2 0 63 2 0 28 1 0 7 chain 63347 chr4 191154276 + 48012480 48013268 LTR17 781 - 9 781 51299 373 22 12 59 0 1 22 10 0 114 5 9 143 1 0 39 chain 55547 chr4 191154276 + 48013538 48014288 MER4E1 777 - 7 777 55388 16 0 2 194 19 15 106 0 1 36 1 0 29 0 1 22 0 19 151 1 0 160 2 5 13 chain 34150 chr4 191154276 + 48015282 48015721 MER4A1 472 - 0 448 77414 40 1 3 214 1 0 85 0 8 98 chain 24519 chr4 191154276 + 48016907 48017202 AluY 311 + 0 290 107442 123 9 4 163 chain 6662 chr4 191154276 + 48053095 48053198 MER20 218 - 27 132 179971 34 10 13 54 1 0 4 chain 562653 chr4 191154276 + 48053971 48059991 L1HS 6032 - 0 6020 283 4841 1 0 76 0 1 1102 chain 11089 chr4 191154276 + 48069764 48069899 MER85 139 + 4 139 155849 135 chain 46398 chr4 191154276 + 48081082 48081739 LTR8 732 + 8 721 61689 11 0 1 13 0 25 84 2 0 15 0 6 142 16 43 120 4 6 52 14 11 184 chain 27857 chr4 191154276 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74 1 0 25 5 2 39 3 4 41 0 1 52 0 15 40 chain 6683 chr4 191154276 + 48259217 48259303 MER33 330 + 209 295 179806 86 chain 10459 chr4 191154276 + 48271208 48271332 L1PA5 6144 - 1 127 158440 10 1 3 113 chain 28549 chr4 191154276 + 48280572 48280883 AluYa5 310 - 1 310 90967 53 2 0 256 chain 538433 chr4 191154276 + 48281633 48289036 L1PA7 6471 + 0 6451 3081 165 32 33 206 1 2 1353 2 1 275 1 0 41 0 1 121 5 0 29 1 9 284 0 2 119 2 0 60 1 3 48 0 13 123 7 11 256 0 4 338 1 0 901 0 1 271 1 5 403 6 2 537 0 3 143 982 0 688 chain 85520 chr4 191154276 + 48287372 48288348 LTR5_Hs 974 - 0 974 41338 149 3 0 280 6 7 538 chain 1019 chr4 191154276 + 48293665 48293718 MER9a2 513 - 0 53 66850 53 chain 133923 chr4 191154276 + 48293763 48295376 SVA_C 1631 + 60 1625 27231 11 48 0 137 3 0 261 0 3 91 0 3 167 0 2 122 16 17 4 0 1 76 2 1 40 1 0 22 1 0 12 4 0 595 chain 8824 chr4 191154276 + 48295382 48295841 MER9a2 513 - 53 512 66850 459 chain 88412 chr4 191154276 + 48303625 48305738 L1MA3 4352 + 3013 4346 40218 30 449 0 32 1 6 183 7 0 123 1 0 98 0 17 191 11 10 159 305 0 89 0 3 98 0 9 32 49 11 9 1 0 50 11 8 8 1 0 80 2 0 23 1 0 6 1 0 14 21 19 9 2 0 16 chain 32390 chr4 191154276 + 48303660 48304104 MLT2A1 477 - 0 477 80208 39 4 0 12 6 41 141 1 5 16 0 1 17 1 2 8 2 0 15 0 1 9 5 2 168 chain 210539 chr4 191154276 + 48314627 48317008 L1PA4 6152 - 0 2384 18465 850 0 4 626 7 8 443 1 0 282 0 1 57 6 4 109 chain 28667 chr4 191154276 + 48320300 48320610 AluYb9 318 + 8 318 90464 310 chain 3123 chr4 191154276 + 48324248 48324287 MLT1I 406 + 367 406 222500 39 chain 167336 chr4 191154276 + 48364772 48366872 SVA_F 1814 - 0 1805 22353 10 2 0 623 1 0 4 2 0 214 305 15 939 chain 12585 chr4 191154276 + 48365628 48365761 SVA_F 1814 - 675 808 102892 133 chain 4674 chr4 191154276 + 48365847 48365933 SVA_F 1814 - 540 626 126797 86 chain 26130 chr4 191154276 + 48378636 48378927 AluYc3 301 - 10 301 99482 291 chain 110281 chr4 191154276 + 48400958 48402367 L1PA10 4194 - 45 1444 34134 32 4 1 40 1 0 84 9 1 153 0 1 408 0 1 292 0 1 176 6 5 204 chain 196569 chr4 191154276 + 48416574 48418665 L1HS 6032 - 0 2091 19458 2091 chain 114360 chr4 191154276 + 48418665 48419890 L1HS 6032 + 2660 3889 32867 471 0 4 754 chain 3057 chr4 191154276 + 48433582 48433618 L2a 937 + 301 337 223853 36 chain 32265 chr4 191154276 + 48436428 48436881 L1PA17 2846 + 2240 2693 80415 22 0 3 94 6 15 128 5 0 15 3 0 18 1 0 63 3 2 32 1 0 17 1 0 44 chain 24079 chr4 191154276 + 48442969 48443344 THE1D 372 + 0 372 109879 15 0 2 7 3 4 28 16 7 72 0 4 47 8 7 5 2 0 111 1 4 27 1 0 32 chain 184034 chr4 191154276 + 48445043 48447066 L1PA4 6152 - 9 2033 20587 2017 0 1 6 chain 62152 chr4 191154276 + 48447068 48447754 L1PA4 6152 + 3428 4114 51830 686 chain 3325 chr4 191154276 + 48469072 48469232 MER5A1 166 + 1 165 218486 29 108 112 23 chain 87548 chr4 191154276 + 48470546 48471640 L1PA8 5853 - 0 1097 40553 62 0 7 24 1 0 19 2 1 61 2 1 70 2 0 43 2 1 233 0 1 241 1 2 331 chain 22144 chr4 191154276 + 48489852 48490118 AluSg7 307 - 40 307 119608 135 0 1 131 chain 24816 chr4 191154276 + 48575570 48575867 AluSp 311 - 16 311 105797 163 2 0 132 chain 2817 chr4 191154276 + 48599277 48599382 L1MC1 2226 + 2062 2149 228497 12 14 9 15 9 7 16 1 0 7 10 1 6 1 0 14 chain 12384 chr4 191154276 + 48604854 48605076 Tigger3a 397 + 160 396 150698 18 6 10 15 0 7 126 40 43 17 chain 22813 chr4 191154276 + 48617796 48618055 L1PA7 6471 + 6025 6284 116517 259 chain 14899 chr4 191154276 + 48618059 48618244 L1PA7 6471 + 6284 6469 141633 185 chain 12713 chr4 191154276 + 48627459 48627746 MER2 342 + 35 329 149407 15 33 33 28 1 7 129 64 65 17 chain 61721 chr4 191154276 + 48640415 48641132 L1PA7 6471 + 5751 6469 52032 385 0 1 332 chain 20380 chr4 191154276 + 48665592 48665814 AluY 311 + 82 305 125960 50 0 1 172 chain 111510 chr4 191154276 + 48677175 48678500 LTR12C 1709 + 0 1704 33806 650 0 278 149 2 0 34 1 0 6 2 0 107 0 4 168 0 102 206 chain 6316 chr4 191154276 + 48681575 48681652 L1MA5A 2387 + 2230 2306 182669 66 1 0 10 chain 97740 chr4 191154276 + 48684277 48685446 L1PA7 6471 + 5298 6470 37353 175 0 5 143 1 0 89 2 1 22 1 2 350 2 1 384 chain 83414 chr4 191154276 + 48697623 48698710 L1PA8 5853 + 4771 5853 42150 238 0 2 553 1 0 44 2 0 70 15 13 49 2 1 19 6 5 88 chain 554226 chr4 191154276 + 48713093 48719299 L1PA3long 6157 + 0 6157 920 118 0 1 596 1 0 956 11 0 479 41 0 2491 1 0 789 0 4 723 chain 307703 chr4 191154276 + 48730772 48734956 L1PA7 6471 + 5 6468 13102 59 2 3 134 11 10 118 45 242 24 38 43 15 5 5 63 5 15 18 74 149 143 0 21 145 1 5 284 5 14 244 1 0 30 1 0 139 0 3 142 1 0 74 0 3 162 7 19 17 0 1 292 1 0 194 1 0 22 0 1940 187 0 1 419 0 6 106 0 3 101 2 1 54 19 0 8 0 19 605 0 1 150 6 0 10 chain 15549 chr4 191154276 + 48736696 48736861 L1HS 6032 - 1140 1305 139148 165 chain 106712 chr4 191154276 + 48736861 48738001 L1HS 6032 + 4892 6032 35059 1140 chain 4256 chr4 191154276 + 48742701 48743097 L1MC1 2226 + 1498 1887 203788 42 323 316 31 chain 54046 chr4 191154276 + 48747162 48747762 L1PA5 6144 + 5526 6126 56329 321 0 1 26 1 0 252 chain 179281 chr4 191154276 + 48759181 48761260 L1PA5 6144 + 4048 6142 21052 87 0 8 486 0 5 380 8 9 139 0 5 815 24 24 129 4 0 7 chain 24380 chr4 191154276 + 48812231 48812508 AluY 311 + 27 305 108194 99 0 1 178 chain 457038 chr4 191154276 + 48819853 48825577 L1PA8 5853 + 108 5853 8511 36 0 5 153 18 6 325 0 6 11 7 1 295 0 1 334 4 5 115 9 9 5 1 0 123 9 37 76 2 1 355 0 9 2 20 0 123 1 10 810 0 3 116 2 1 705 5 10 74 1 2 94 0 1 579 0 1 88 2 1 172 0 1 175 0 4 17 5 4 555 1 0 44 2 0 74 1 0 5 6 1 48 10 9 14 1 0 94 chain 29868 chr4 191154276 + 48828170 48828529 L1PA5 6144 - 1 357 85220 10 3 1 101 1 0 244 chain 11939 chr4 191154276 + 48830108 48830291 LTR12C 1709 + 654 837 152449 95 2 17 7 15 0 64 chain 2490 chr4 191154276 + 48830291 48830322 LTR12C 1709 + 718 749 173346 31 chain 5394 chr4 191154276 + 48837768 48837831 FLAM_C 140 + 47 110 191049 63 chain 12667 chr4 191154276 + 48846748 48846978 MER2 342 - 24 316 149580 18 6 5 41 29 35 106 1 2 19 0 56 10 chain 35354 chr4 191154276 + 48850915 48851317 L1PA5 6144 + 5737 6139 75725 402 chain 543558 chr4 191154276 + 48866597 48872749 L1PA4 6152 - 1 6150 2261 20 1 0 129 0 1 245 0 3 1065 0 1 595 4 0 1771 0 2 377 0 2 1364 1 0 116 6 0 458 chain 91258 chr4 191154276 + 48874631 48876097 L1MA3 4352 - 1819 3193 39213 220 1 0 178 5 6 11 16 15 68 1 0 152 0 4 75 19 25 128 1 0 7 70 0 3 34 0 46 0 1 65 1 0 17 1 0 133 0 4 53 1 5 11 1 0 4 13 16 41 6 0 23 1 6 52 3 0 5 chain 260027 chr4 191154276 + 48888375 48891355 L1PA5 6144 - 16 3001 15695 323 1 0 68 0 1 435 0 4 433 0 1 94 1 0 392 0 1 32 3 4 284 7 8 373 1 0 225 4 3 304 chain 78358 chr4 191154276 + 48891355 48892280 L1PA5 6144 + 5211 6144 44342 86 0 4 81 1 2 713 2 1 30 1 5 11 chain 45033 chr4 191154276 + 48909328 48910289 MER41B 635 - 0 632 63016 87 0 5 24 341 7 44 18 17 324 1 2 122 chain 14308 chr4 191154276 + 48913197 48913401 L1PA8 5853 - 0 200 143539 93 1 0 17 5 4 51 2 1 8 1 0 26 chain 70335 chr4 191154276 + 48913411 48914553 L1PA8 5853 + 4783 5620 48249 227 2 0 156 300 0 395 2 1 47 2 0 11 chain 497998 chr4 191154276 + 48920311 48925868 L1PA3long 6157 - 421 6128 6955 941 0 22 351 9 1 466 1 0 272 1 3 1286 0 3 706 0 2 779 0 128 86 0 1 535 0 1 124 chain 21435 chr4 191154276 + 48926213 48926487 AluSc5 308 - 12 282 122389 166 2 0 12 1 0 25 1 0 67 chain 20634 chr4 191154276 + 48937823 48938053 L1PA4 6152 + 5908 6138 125175 230 chain 4185 chr4 191154276 + 48940216 48940482 MLT1D 503 + 21 306 204764 27 194 214 4 1 0 40 chain 30282 chr4 191154276 + 48953486 48953883 MER51B 395 - 0 395 83988 150 1 0 219 3 2 24 chain 42857 chr4 191154276 + 48959305 48959873 MER41A 554 + 0 554 65588 140 4 16 12 28 1 279 0 1 105 chain 6787 chr4 191154276 + 48964868 48964978 MER4D1 891 - 793 891 179063 61 18 6 31 chain 33616 chr4 191154276 + 48967550 48968145 MER4B 649 + 0 633 78219 25 1 0 114 19 60 54 0 2 103 103 93 113 11 17 52 chain 58769 chr4 191154276 + 48985825 48986542 L1PA7 6471 + 5735 6449 53542 319 0 1 176 1 0 78 2 0 5 3 2 133 chain 3366 chr4 191154276 + 48992824 48992869 L1MB7 1623 + 1364 1408 217737 11 1 0 33 chain 511068 chr4 191154276 + 49009493 49015638 L1PA6 6164 - 3 6159 6065 7 5 0 277 0 1 42 0 3 507 4 0 8 0 1 187 1 2 1809 0 1 131 1 2 915 9 11 40 0 4 24 0 8 81 1 2 64 25 6 135 0 9 492 5 6 102 0 1 27 0 1 401 0 3 450 7 8 388 chain 209956 chr4 191154276 + 49022435 49025389 L1PB1 5432 - 316 3292 18495 13 6 5 255 0 1 95 3 2 115 0 1 141 0 1 91 9 10 171 1 2 54 1 2 90 40 41 62 0 2 121 0 1 113 5 1 43 13 15 163 11 12 21 8 9 34 0 1 39 0 1 381 15 16 348 62 77 71 5 0 259 0 1 95 chain 15334 chr4 191154276 + 49028780 49028992 L1PB2 3958 - 120 328 140382 63 1 0 26 2 0 27 0 1 5 1 0 37 1 0 49 chain 72022 chr4 191154276 + 49031118 49032114 LTR5B 1012 + 0 1012 47469 83 6 7 38 1 0 4 9 23 184 2 1 25 10 9 115 1 0 94 0 1 44 3 10 6 7 0 104 0 2 253 0 2 7 chain 170959 chr4 191154276 + 49041764 49043655 L1PA4 6152 - 1 1895 21948 755 0 3 1136 chain 16639 chr4 191154276 + 49047516 49047728 Tigger3a 397 + 139 361 136559 9 0 10 203 chain 32113 chr4 191154276 + 49057931 49058272 L1HS 6032 - 0 341 80665 341 chain 32721 chr4 191154276 + 49059113 49059578 MER4A1 472 - 0 470 79653 235 36 40 43 18 19 133 chain 13631 chr4 191154276 + 49069216 49069382 L1PA4 6152 - 0 168 145848 13 0 3 40 1 0 112 chain 339948 chr4 191154276 + 49069864 49073942 L1P1 4361 + 1 4075 11899 362 14 15 196 1 0 128 6 7 115 22 5 382 1 0 940 1 2 474 0 1 52 2 1 750 0 9 69 0 1 415 8 10 140 chain 526016 chr4 191154276 + 49073947 49080505 L1PA3long 6157 + 4 6152 4586 147 1 2 415 0 1 198 9 137 1302 545 0 1722 0 1 314 1 0 24 0 1 86 0 4 786 1 0 180 1 2 826 chain 177677 chr4 191154276 + 49080529 49082612 L1PA5 6144 + 4059 6143 21193 67 0 1 294 0 1 206 1 0 714 1 0 5 0 1 795 chain 6496 chr4 191154276 + 49085484 49085558 L1PA5 6144 - 0 74 181284 74 chain 25000 chr4 191154276 + 49167445 49171073 MER57-int 2662 - 15 2494 104791 22 3 0 27 29 23 16 19 16 5 0 1 12 36 21 68 18 12 92 3047 1925 94 2 0 78 0 2 48 0 5 12 chain 529874 chr4 191154276 + 49171850 49177975 L1PA3long 6157 - 15 6153 4203 132 0 1 699 5 6 250 0 1 4 1 0 152 4 11 918 0 1 674 0 1 121 5 6 380 0 5 2422 0 1 135 4 0 19 1 0 199 chain 26750 chr4 191154276 + 49189154 49189467 AluYk4 311 - 3 311 97163 65 5 0 243 chain 3889 chr4 191154276 + 49203503 49203550 MSTA 426 - 237 284 209034 47 chain 14074 chr4 191154276 + 49203717 49204176 MSTA-int 1630 - 19 1607 144311 90 6 5 28 236 1370 6 1 0 6 3 0 83 chain 84124 chr4 191154276 + 49208215 49209309 L1PA7 6471 + 5369 6470 41848 228 0 6 11 2 0 52 3 4 638 3 5 157 chain 4988 chr4 191154276 + 49233890 49233952 MSTA 426 - 240 302 195267 62 chain 8049 chr4 191154276 + 49234103 49234224 MSTA-int 1630 - 21 142 170767 88 7 0 7 1 8 18 chain 12849 chr4 191154276 + 49254066 49254370 L1PA15 4387 + 4064 4352 148851 40 1 0 26 1 0 55 1 0 4 17 15 13 4 3 33 46 43 20 18 8 5 0 3 20 chain 6334 chr4 191154276 + 49256931 49257173 Tigger5 388 - 52 286 182516 34 34 31 11 2 0 25 1 0 15 93 91 27 chain 96250 chr4 191154276 + 49274232 49275849 L1PB 1623 + 106 1451 37748 6 1 0 5 1 0 52 4 1 18 7 4 75 1 0 105 2 0 27 1 0 69 28 7 204 0 1 101 0 3 5 21 19 181 0 1 307 14 0 85 226 0 31 2 1 32 1 0 5 chain 5375 chr4 191154276 + 49338445 49338523 L1PB 1623 - 172 248 191243 5 1 0 32 2 1 38 chain 95025 chr4 191154276 + 49523455 49525034 L1PB 1623 - 172 1517 38086 5 1 0 32 2 1 22 189 0 94 14 0 307 0 1 181 25 27 101 0 1 204 28 7 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 6 chain 84189 chr4 191154276 + 49587200 49588294 L1PA7 6471 - 1 1102 41829 157 3 5 638 3 4 45 2 0 21 0 6 225 chain 8981 chr4 191154276 + 49592668 49592792 MSTA-int 1630 + 1488 1611 165709 28 6 5 90 chain 23996 chr4 191154276 + 49611453 49611759 AluYk11 308 + 0 297 110356 50 4 0 187 6 1 59 chain 359234 chr4 191154276 + 49622941 49627289 L1P1 4361 + 1 4341 11372 217 4 0 213 0 1 142 1 0 128 12 5 2062 0 5 379 13 14 113 0 1 394 1 0 476 1 0 154 1 0 23 2 1 12 chain 22507 chr4 191154276 + 49631211 49631509 AluY 311 + 0 294 118000 132 11 6 139 4 5 12 chain 28404 chr4 191154276 + 52703551 52703849 AluYd8 298 + 0 298 91561 298 chain 35641 chr4 191154276 + 52742331 52742735 L1PA4 6152 + 5739 6142 75351 244 3 1 149 0 1 8 chain 41501 chr4 191154276 + 52791774 52792311 MLT2A2 560 - 0 560 67278 54 0 1 6 1 0 81 7 18 202 1 4 19 0 9 166 chain 532672 chr4 191154276 + 52801243 52807255 L1PA3long 6157 - 0 6138 3890 1897 1 0 1088 0 1 466 9 8 233 3 0 1560 0 128 118 0 1 490 0 7 7 2 0 5 4 0 129 chain 497910 chr4 191154276 + 52813675 52819532 L1PA5 6144 - 4 6141 6960 143 5 6 231 0 1 461 1 4 176 0 2 104 0 1 46 5 6 95 3 1 482 0 1 36 0 8 457 2 0 230 1 0 479 1 0 606 3 4 812 1 2 205 0 177 314 0 1 7 0 74 186 9 23 756 chain 181375 chr4 191154276 + 52834852 52837543 L1PA10 4194 - 33 2400 20860 11 2 0 34 3 0 72 2 1 5 0 1 179 317 0 64 0 3 655 0 1 473 1 0 25 7 9 226 17 21 18 3 0 134 0 2 214 0 3 40 0 1 119 1 0 5 14 1 50 chain 9644 chr4 191154276 + 52837578 52837683 L1PA3long 6157 - 0 105 162382 105 chain 11301 chr4 191154276 + 52841706 52841891 L1MA8 2339 - 1477 1663 155055 24 24 25 10 2 0 53 0 2 72 chain 10817 chr4 191154276 + 52849201 52849362 MLT2B1 522 + 37 202 156909 84 19 23 58 chain 144685 chr4 191154276 + 52849570 52851247 L1PA5 6144 - 7 1719 25371 41 3 34 767 0 4 171 0 1 13 1 0 681 chain 364015 chr4 191154276 + 52852387 52856696 L1P1 4361 - 33 4344 11259 23 1 0 157 1 0 335 2 3 2435 0 1 340 0 1 679 0 1 336 chain 50663 chr4 191154276 + 52872307 52872862 L1PA3long 6157 + 5587 6142 58527 555 chain 27175 chr4 191154276 + 52894522 52894811 AluYg6 310 + 1 290 95680 289 chain 25544 chr4 191154276 + 52913182 52913536 THE1B 368 - 0 368 102028 167 0 2 31 11 8 94 7 22 44 chain 107022 chr4 191154276 + 52913542 52915414 THE1B-int 1605 - 5 1563 34966 108 7 0 52 74 0 120 355 16 229 6 10 342 0 101 12 13 0 155 7 32 200 0 6 154 25 8 13 chain 4372 chr4 191154276 + 52913724 52913772 L1PA6 6164 + 6114 6162 202291 48 chain 9689 chr4 191154276 + 52926830 52926943 L1PA4 6152 - 0 118 162148 6 0 5 107 chain 15408 chr4 191154276 + 52927389 52927649 L1PA8 5853 + 5594 5848 140172 13 3 1 67 3 4 14 12 9 38 2 1 15 6 5 87 chain 60028 chr4 191154276 + 52930818 52931721 L1PB2 3958 - 120 991 52810 63 1 0 21 3 1 74 1 0 20 0 4 38 1 0 77 11 10 79 12 7 5 2 0 57 0 5 6 2 0 10 4 1 51 2 0 45 22 0 49 1 0 80 4 6 162 chain 17644 chr4 191154276 + 52936670 52936860 L1PA3long 6157 + 5967 6157 133864 190 chain 12642 chr4 191154276 + 52942716 52942890 MER84 505 - 325 498 149672 144 8 7 22 chain 503332 chr4 191154276 + 52952439 52958829 L1PA7 6471 - 13 6466 6650 139 6 0 609 1 0 89 1 0 151 0 1 213 1 0 44 3 1 425 1 0 422 1 2 7 4 0 86 1 0 25 14 8 612 0 1 5 1 0 78 8 6 257 3 5 525 0 3 111 0 1 474 1 0 57 7 3 266 7 4 199 0 3 354 0 19 377 0 65 64 0 5 131 1 2 32 3 0 67 37 35 63 4 0 9 4 0 146 0 7 6 8 9 230 chain 333948 chr4 191154276 + 52985393 52989269 L1P1 4361 - 464 4360 12056 1449 0 2 7 2 0 131 0 1 1699 0 1 24 9 11 70 0 16 371 1 0 5 0 1 108 chain 26508 chr4 191154276 + 53004674 53004978 L1PA5 6144 + 5823 6128 98013 68 0 1 236 chain 9048 chr4 191154276 + 53006020 53006131 L1MB3 1562 + 798 909 165323 111 chain 24443 chr4 191154276 + 53006153 53006612 L1PA13 3608 + 3118 3548 107843 14 1 0 28 10 9 105 3 1 61 1 0 55 11 8 37 16 12 44 3 0 9 35 24 10 4 1 12 chain 31107 chr4 191154276 + 53009072 53009472 MER57B1 401 - 0 401 82330 41 4 0 214 0 4 70 7 8 64 chain 511475 chr4 191154276 + 53017370 53023777 L1PA7 6471 + 3 6464 6030 400 0 2 246 0 1 29 12 11 236 8 9 417 2 3 136 0 3 60 0 42 436 0 1 388 1 0 440 1 0 167 0 1 89 8 1 363 14 13 19 18 14 42 0 4 160 5 1 4 0 1 219 14 0 39 1 2 362 0 1 38 0 1 170 1 0 4 0 1 6 1 18 63 0 4 105 4 2 244 0 1 15 1 0 18 0 1 565 0 3 76 0 2 264 0 1 484 0 1 12 chain 528602 chr4 191154276 + 53031357 53037497 L1PA5 6144 - 0 6144 4345 138 25 0 705 0 4 817 0 2 976 2 0 343 0 1 1301 0 1 1017 0 17 356 0 1 159 0 4 94 0 1 207 chain 3358 chr4 191154276 + 53059032 53059074 MER121 330 + 84 125 217903 5 1 0 36 chain 161088 chr4 191154276 + 53073664 53075792 L1PA7 6471 + 202 2694 23177 206 1 2 236 3 372 167 27 37 132 2 3 30 0 1 82 0 4 481 16 18 17 0 1 91 5 1 544 23 0 4 0 1 47 0 1 14 chain 143771 chr4 191154276 + 53075793 53077735 L1PA7 6471 + 4511 6296 25520 157 0 4 319 171 1 21 0 2 591 9 8 387 0 2 134 0 2 57 0 4 96 chain 11622 chr4 191154276 + 53077761 53077896 L1PA7 6471 + 6336 6470 153801 130 1 0 4 chain 423671 chr4 191154276 + 53079320 53084350 L1PA5 6144 - 3 5032 9452 186 6 5 656 1 0 22 5 6 601 4 5 208 0 2 142 0 1 602 7 10 14 4 0 431 0 4 50 0 1 800 0 1 1225 9 0 57 chain 543980 chr4 191154276 + 53084388 53090537 L1PA3long 6157 - 0 6151 2214 1491 0 1 1630 0 1 2851 22 23 111 1 0 43 chain 36205 chr4 191154276 + 53090550 53091018 L1P2 5180 - 4053 4585 74620 170 0 25 93 6 46 6 1 0 192 chain 105596 chr4 191154276 + 53104089 53105259 L1PA4 6152 - 16 1190 35351 36 0 4 1134 chain 60345 chr4 191154276 + 53135213 53135978 MER4E1 777 + 0 770 52658 24 2 1 237 0 1 43 0 1 5 1 0 233 3 0 154 13 21 50 chain 180165 chr4 191154276 + 53141359 53143343 L1PA3long 6157 - 749 2736 20975 773 1 0 277 0 4 933 chain 64098 chr4 191154276 + 53143344 53144066 L1PA3long 6157 + 5434 6149 50966 577 7 0 138 chain 78576 chr4 191154276 + 53150282 53151402 L1PB2 3958 - 127 1232 44229 55 2 1 94 1 0 64 14 13 152 4 0 13 2 0 65 46 39 28 1 0 66 1 0 7 0 1 207 0 4 99 1 0 187 1 0 10 chain 7357 chr4 191154276 + 53167317 53167524 L1PA6 6164 - 3 208 53702 7 2 0 198 chain 78458 chr4 191154276 + 53167566 53168430 L1PA3long 6157 - 5 869 44293 864 chain 18943 chr4 191154276 + 53168430 53168963 L1PA6 6164 - 215 749 53702 110 5 6 418 chain 532957 chr4 191154276 + 53185954 53191979 L1PA3long 6157 - 1 6157 3857 1010 0 1 2537 0 1 360 0 1 1342 0 128 33 1 0 590 0 1 152 chain 21581 chr4 191154276 + 53200850 53201106 AluY 311 + 38 295 121841 94 0 1 162 chain 12075 chr4 191154276 + 53207478 53207642 MSTA-int 1630 - 0 166 151882 9 1 2 141 2 3 11 chain 459062 chr4 191154276 + 53243515 53249904 L1PA8A 6298 + 36 6290 8443 4 1 0 16 1 0 12 20 9 18 8 5 16 23 12 20 1 0 18 5 4 7 1 0 12 2 0 6 11 9 4 1 0 12 46 37 9 3 1 35 41 17 9 2 0 6 6 0 74 32 27 71 6 5 43 3 4 248 4 0 47 19 21 110 0 1 150 3 0 6 7 3 78 3 2 206 0 4 105 0 12 128 2 1 257 10 0 55 0 1 517 9 1 176 0 20 262 0 4 56 0 2 95 0 11 9 11 0 207 1 4 6 3 0 3 1 0 22 0 1 9 2 3 74 0 1 222 6 0 173 1 2 107 23 24 214 0 3 206 10 7 168 0 1 74 0 1 22 0 1 118 1 0 50 1 0 20 2 1 149 9 32 90 85 0 266 2 0 62 2 1 78 9 10 89 5 6 475 3 0 5 9 12 108 2 0 17 chain 11781 chr4 191154276 + 53250964 53251110 MER4A 717 - 571 717 153127 146 chain 172351 chr4 191154276 + 53254353 53257573 L1PA7 6471 - 1 2098 21779 160 6 1 32 2 0 157 0 8 101 5 4 382 0 4 1005 1127 0 243 chain 92058 chr4 191154276 + 53256209 53257291 MER11C 1089 + 0 1073 38952 553 9 0 520 chain 98424 chr4 191154276 + 53260363 53261454 L1PA3long 6157 + 5067 6157 37184 136 1 0 954 chain 120819 chr4 191154276 + 53274986 53276475 LTR12C 1709 - 0 1709 30753 64 13 14 4 1 0 70 0 101 14 1 2 212 0 4 106 3 1 5 1 0 43 2 1 231 1 0 15 0 119 124 1 0 318 0 1 260 chain 9728 chr4 191154276 + 53289514 53289619 L1PA3long 6157 - 15 120 161949 105 chain 27941 chr4 191154276 + 53290775 53291085 AluYk4 311 + 0 310 93199 310 chain 32567 chr4 191154276 + 53291085 53291521 L1PA8 5853 - 6 451 79914 78 0 5 4 1 0 18 7 6 44 1 0 13 3 2 30 0 11 28 2 0 44 1 0 162 chain 4370 chr4 191154276 + 53299422 53299470 MER20 218 - 133 181 202315 48 chain 48493 chr4 191154276 + 53300759 53301364 L1PA7 6471 - 2 609 60114 8 3 0 150 15 19 170 0 3 79 2 0 178 chain 169042 chr4 191154276 + 53308148 53312437 L1PA4 6152 - 0 4311 8291 10 0 6 95 8 10 904 0 1 1224 0 1 642 19 25 304 0 1 724 0 4 66 0 1 293 chain 533410 chr4 191154276 + 53312514 53318645 L1PA3long 6157 + 24 6157 3790 558 0 9 21 0 1 1244 0 1 841 5 0 9 1 6 606 0 1 160 0 1 764 0 1 159 0 1 576 18 1 899 0 2 123 0 2 147 chain 48675 chr4 191154276 + 53318660 53319895 L1PA4 6152 - 4311 5552 8291 677 0 3 29 7 8 44 0 2 478 chain 349766 chr4 191154276 + 53320432 53324856 L1P2 5180 - 10 5176 11613 34 1 0 49 1 0 173 0 1 272 0 728 657 0 1 72 8 6 175 0 1 452 0 1 138 0 1 12 0 3 1149 1 2 10 0 1 145 3 0 120 7 1 111 1 14 48 1 0 6 1 0 138 0 4 130 1 0 54 7 6 45 1 7 154 3 2 55 1 0 22 21 20 95 0 1 50 chain 354870 chr4 191154276 + 53325142 53329483 L1P1 4361 + 4 4341 11479 752 14 13 49 11 12 898 5 15 103 1 2 254 21 10 82 0 4 487 3 0 238 0 1 240 0 1 31 3 1 24 1 0 710 13 12 207 1 0 155 1 0 23 2 1 12 chain 164533 chr4 191154276 + 53330308 53332772 SVA_F 1814 + 10 1814 22742 827 6 6 56 218 0 48 0 15 49 455 0 166 1 0 10 1 0 627 chain 3269 chr4 191154276 + 53331197 53331233 SVA_F 1814 + 1139 1175 179541 36 chain 8966 chr4 191154276 + 53331233 53331366 SVA_F 1814 + 937 1091 100497 10 1 15 13 18 25 91 chain 2229 chr4 191154276 + 53331366 53331391 SVA_F 1814 + 1267 1291 170907 7 1 0 17 chain 7078 chr4 191154276 + 53331512 53331617 SVA_F 1814 + 1187 1291 100497 87 1 0 17 chain 7524 chr4 191154276 + 53331634 53331775 SVA_F 1814 + 893 1000 174017 55 48 14 38 chain 16486 chr4 191154276 + 53331783 53331966 SVA_F 1814 + 1006 1187 99880 171 2 0 10 chain 85876 chr4 191154276 + 53333292 53334319 L1PA5 6144 + 5109 6138 41201 872 26 28 129 chain 40231 chr4 191154276 + 53346188 53346642 L1PA3long 6157 - 0 454 68982 454 chain 159579 chr4 191154276 + 53346642 53348415 L1PA3long 6157 + 3911 5690 23388 1049 0 7 236 1 0 487 chain 480604 chr4 191154276 + 53365567 53371135 L1PA4 6152 - 9 6144 7711 54 0 1 49 1 2 602 0 1 867 0 27 534 0 4 224 0 1 50 0 1 1413 1 0 159 0 12 184 0 1 150 0 1 1093 12 5 85 0 525 90 chain 8755 chr4 191154276 + 53376177 53376285 U13 108 + 0 108 166886 108 chain 15231 chr4 191154276 + 53376979 53377192 MER30 238 + 0 230 140689 107 4 18 36 0 6 23 3 0 40 chain 6252 chr4 191154276 + 53377224 53377305 MLT1B 390 + 309 390 183152 81 chain 18593 chr4 191154276 + 53379726 53380053 THE1B 368 + 0 327 131250 44 4 0 20 19 5 12 0 14 73 2 1 11 0 1 4 1 0 5 16 23 19 1 0 7 2 1 87 chain 173395 chr4 191154276 + 53380089 53382007 L1PA3long 6157 - 0 1923 21665 12 0 3 318 0 1 568 0 1 1020 chain 507481 chr4 191154276 + 53388046 53394488 L1PA6 6164 + 0 6149 6366 140 19 14 8 0 5 70 0 2 277 0 2 735 0 1 666 0 1 158 325 0 255 40 1 25 0 1 75 0 1 234 0 2 120 0 4 59 0 1 317 0 2 47 1 0 232 3 6 374 1 2 129 1 12 159 1 0 172 18 47 881 2 1 77 1 0 798 0 14 22 chain 88582 chr4 191154276 + 53399721 53400839 L1PA11 4918 + 3402 4508 40154 752 0 1 173 5 0 61 12 7 76 2 0 16 1 0 20 chain 564123 chr4 191154276 + 53404637 53410664 L1HS 6032 + 2 6032 235 5628 0 3 399 chain 39857 chr4 191154276 + 53421880 53422373 L1PA5 6144 - 6 502 69523 166 2 0 6 11 13 221 0 3 87 chain 11603 chr4 191154276 + 53426199 53426335 MLT2D 439 + 2 138 153877 136 chain 5841 chr4 191154276 + 53448423 53448527 MIR 256 - 70 201 186756 48 1 0 26 13 41 16 chain 11594 chr4 191154276 + 53458555 53458726 MSTA 426 + 0 195 153917 98 0 17 18 18 25 37 chain 29654 chr4 191154276 + 53476079 53476389 AluYg6 310 - 0 310 86056 310 chain 76922 chr4 191154276 + 53538448 53539497 MER11C 1089 - 26 1089 45013 143 1 0 54 0 1 127 1 2 37 1 0 4 1 5 112 48 46 146 1 0 63 6 10 58 0 9 246 chain 10613 chr4 191154276 + 53556620 53556771 MER4D1 891 + 147 326 157761 75 10 39 5 1 0 60 chain 5977 chr4 191154276 + 53562203 53562280 L1PA15 4387 + 2407 2486 185456 12 0 2 65 chain 3850 chr4 191154276 + 53592669 53592725 MER3 215 + 157 215 209642 24 1 3 31 chain 3286 chr4 191154276 + 53597751 53597821 MER5B 177 + 104 172 219254 18 22 20 30 chain 519870 chr4 191154276 + 53634340 53640458 L1PA5 6144 - 1 6144 5176 10 3 1 101 1 0 733 1 4 798 1 5 146 0 4 497 1 15 151 9 5 156 0 1 109 1 0 234 1 0 4 1 0 860 2 1 181 4 6 328 1 3 413 0 1 206 9 0 1036 0 14 120 chain 18173 chr4 191154276 + 53643997 53644221 AluSp 311 + 85 307 132397 47 2 0 175 chain 20699 chr4 191154276 + 53644596 53644862 AluSq2 311 - 10 311 124970 115 7 43 4 1 0 139 chain 24115 chr4 191154276 + 53647880 53648160 AluY 311 + 17 298 109662 115 0 1 165 chain 21318 chr4 191154276 + 53649716 53649970 L1PA4 6152 - 9 264 122812 118 0 1 136 chain 56807 chr4 191154276 + 53649976 53650622 L1PA4 6152 + 5252 5900 54648 52 0 4 554 2 0 38 chain 8265 chr4 191154276 + 53652704 53652804 HY3 101 + 1 101 169589 100 chain 464156 chr4 191154276 + 53668452 53674331 L1PA8 5853 + 50 5853 8251 22 2 0 8 65 28 80 1 0 15 22 9 89 19 7 156 3 2 735 6 7 338 0 5 872 7 6 576 6 7 209 12 1 78 1 0 4 0 1 17 5 6 617 14 15 146 0 1 518 0 2 383 2 0 87 14 11 390 0 2 64 1 0 44 2 0 70 16 14 48 5 4 16 1 0 93 chain 564608 chr4 191154276 + 53682629 53688653 L1HS 6032 + 6 6030 221 1669 0 1 2120 1 0 2234 chain 4655 chr4 191154276 + 53693882 53693947 Ricksha_c 1012 + 535 599 199018 48 1 0 16 chain 20425 chr4 191154276 + 53694769 53695012 L1PA5 6144 - 2 241 125827 7 4 0 232 chain 19030 chr4 191154276 + 53700968 53701348 LTR7 482 + 0 477 130031 54 21 110 16 51 0 44 9 10 7 0 9 13 1 32 12 7 17 53 1 9 91 chain 3580 chr4 191154276 + 53724088 53724130 MSTB 430 + 361 404 213972 4 0 1 38 chain 26300 chr4 191154276 + 53754060 53754338 AluYb8 318 - 2 280 98831 278 chain 538768 chr4 191154276 + 53761351 53767458 L1PA4 6152 - 12 6152 3028 249 0 1 4 1 0 342 0 10 497 1 2 140 0 1 480 1 2 60 0 4 675 0 2 445 0 3 835 0 4 1500 0 9 494 3 1 380 chain 4246 chr4 191154276 + 53801160 53801253 MER3 215 + 89 194 203917 28 13 39 8 14 0 30 chain 4678 chr4 191154276 + 53807960 53808164 Tigger4a 237 - 0 80 198783 53 130 8 14 2 0 5 chain 25082 chr4 191154276 + 53826535 53826826 AluSp 311 - 12 302 104394 179 1 0 111 chain 538463 chr4 191154276 + 53836198 53842343 L1PA4 6152 + 0 6143 3074 125 17 3 14 10 24 1183 0 1 1833 1 0 505 0 1 229 1 0 498 0 1 1117 2 0 605 1 0 4 chain 119297 chr4 191154276 + 53858151 53859577 SVA_B 1603 + 0 1603 31294 19 16 5 19 15 5 144 5 4 451 0 40 120 10 49 26 0 120 601 chain 335385 chr4 191154276 + 53897220 53901677 L1P2 5180 + 741 5178 12012 32 5 25 84 61 85 4 1 0 73 0 1 5 2 1 35 82 63 90 11 5 202 6 5 111 2 0 610 1 0 150 25 0 40 4 0 135 7 9 913 0 1 45 4 5 28 7 11 373 22 14 18 2 0 911 0 1 52 1 0 4 0 1 43 1 0 163 1 0 47 1 0 38 1 0 4 chain 25429 chr4 191154276 + 53902237 53902553 L1PA6 6164 - 8 325 102547 204 4 5 108 chain 37359 chr4 191154276 + 53902560 53903022 L1PA7 6471 + 6010 6467 73018 451 5 0 6 chain 36469 chr4 191154276 + 53923328 53923829 L1PA8A 6298 + 5830 6291 74277 42 0 1 22 11 12 126 45 3 255 chain 6741 chr4 191154276 + 53947601 53947676 L1PA16 3655 - 89 164 179386 75 chain 76273 chr4 191154276 + 53949774 53950856 MER11A 1151 - 5 1151 45324 46 2 1 102 15 16 60 0 1 37 18 0 21 43 0 26 0 26 125 0 1 145 0 1 94 0 1 106 0 4 39 4 0 63 0 93 28 0 2 108 chain 142920 chr4 191154276 + 53950856 53952914 L1MA2 4263 + 2065 4114 25660 93 0 3 5 1 2 79 0 2 288 0 2 105 1 0 45 13 8 211 5 6 322 3 0 134 2 0 43 6 12 42 0 5 87 8 7 18 5 1 6 1 0 72 1 0 106 38 37 150 31 29 59 24 17 44 1 0 9 chain 249503 chr4 191154276 + 53961890 53964736 L1PA5 6144 - 1 2855 16281 147 1 0 4 1 3 268 27 29 397 0 4 1874 0 1 127 chain 517259 chr4 191154276 + 53971056 53977515 L1PA7 6471 + 0 6469 5459 168 10 9 4 0 1 38 0 1 182 0 1 586 9 2 168 26 0 16 0 3 40 1 0 371 0 1 45 0 4 39 0 1 151 9 0 809 0 1 62 0 1 360 0 3 32 0 1 352 1 7 19 2 0 24 0 1 108 0 1 314 0 1 637 3 1 346 2 4 104 17 8 97 27 12 346 3 4 135 2 0 23 8 64 428 0 1 322 3 0 10 chain 5086 chr4 191154276 + 53980163 53980341 MIR 256 + 28 190 194217 11 22 7 55 71 70 19 chain 3302 chr4 191154276 + 54001923 54001961 MER102c 337 + 234 272 218948 38 chain 115279 chr4 191154276 + 54005058 54006389 SVA_B 1603 + 42 1603 32689 162 0 1 241 8 5 103 0 109 174 1 125 14 1 0 627 chain 18381 chr4 191154276 + 54028825 54029026 L1PA3long 6157 + 5956 6157 131842 201 chain 532755 chr4 191154276 + 54043699 54049829 L1PA4 6152 + 6 6151 3881 159 9 19 270 14 8 113 3 2 71 7 17 672 6 5 551 1 0 103 0 1 1233 1 0 152 1 0 208 9 7 151 0 1 602 0 4 946 0 1 115 0 1 480 1 0 103 0 1 149 chain 206010 chr4 191154276 + 54067193 54069487 L1PA4 6152 - 1 2295 18792 2294 chain 529668 chr4 191154276 + 54079845 54085944 L1PA5 6144 - 21 6144 4226 628 0 1 117 1 0 76 0 4 946 0 8 417 0 1 157 1 0 848 0 1 536 0 4 904 0 1 576 0 4 294 0 1 204 0 1 394 chain 29420 chr4 191154276 + 54094718 54095039 L1PA4 6152 + 3919 4240 86985 321 chain 170632 chr4 191154276 + 54095039 54096953 L1PA4 6152 + 4241 6152 21974 1137 1 0 39 0 1 590 0 1 137 4 0 6 chain 103823 chr4 191154276 + 54103028 54104430 SVA_D 2077 - 21 1598 35764 551 1 0 50 1 0 32 46 0 22 4 0 13 24 0 4 1 0 254 57 0 86 0 1 7 1 2 81 0 162 68 1 0 10 22 14 16 6 158 25 3 5 16 chain 2800 chr4 191154276 + 54103663 54103709 SVA_D 2077 - 704 752 62730 31 0 2 15 chain 3165 chr4 191154276 + 54104036 54104088 SVA_D 2077 - 1044 1096 62730 52 chain 8486 chr4 191154276 + 54104430 54104524 SVA_D 2077 - 937 1033 88682 36 1 2 53 0 1 4 chain 4004 chr4 191154276 + 54104532 54104653 SVA_D 2077 - 1130 1199 154361 29 2 0 15 50 0 25 chain 270 chr4 191154276 + 54104595 54104628 SVA_D 2077 - 704 737 200074 33 chain 74627 chr4 191154276 + 54104681 54105516 SVA_F 1814 - 979 1814 46197 835 chain 29507 chr4 191154276 + 54113744 54114060 AluYb8 318 + 0 314 86611 123 2 0 191 chain 532718 chr4 191154276 + 54114078 54120066 L1PA3long 6157 + 0 6157 3884 197 0 1 185 0 1 399 0 96 385 1 0 435 0 1 219 0 5 764 0 57 491 0 12 1759 3 0 1150 chain 143159 chr4 191154276 + 54121401 54123076 SVA_D 2077 - 21 2074 25627 514 0 225 279 1 4 27 5 91 128 40 0 24 0 40 78 0 40 79 0 5 132 0 3 205 1 13 151 0 4 11 chain 374348 chr4 191154276 + 54124763 54129867 L1PB1 5432 - 328 5415 10946 94 12 8 185 0 3 188 4 7 230 1 2 218 1 0 140 0 2 70 0 1 211 9 10 25 1 2 52 21 10 367 0 1 384 0 3 346 0 4 46 13 0 180 1 3 41 11 20 297 10 11 128 0 1 73 35 0 26 0 5 291 88 94 33 0 1 18 1 2 444 0 1 220 1 2 124 0 1 42 0 4 406 6 0 10 chain 7249 chr4 191154276 + 54131640 54131723 U6 107 - 13 96 175765 83 chain 41017 chr4 191154276 + 54137964 54138420 L1PA4 6152 + 5084 5540 67874 456 chain 52793 chr4 191154276 + 54138421 54139021 L1PA4 6152 + 5544 6141 57137 464 1 0 39 2 0 94 chain 120610 chr4 191154276 + 54157467 54159197 L1PA8 5853 + 4018 5848 30841 170 3 5 141 5 0 268 1 2 93 52 5 23 16 0 7 7 0 67 11 9 201 11 9 142 1 2 281 0 1 37 0 178 21 1 0 13 1 0 47 2 1 16 10 9 82 chain 147648 chr4 191154276 + 54159922 54164112 L1PA7 6471 - 23 4295 10117 97 0 1 172 0 87 391 0 2 81 0 3 116 7 6 198 0 1 346 2 0 164 6 7 41 3 4 55 0 2 186 0 1 990 1 0 39 0 1 673 0 2 91 27 28 18 27 9 430 3 4 26 chain 541358 chr4 191154276 + 54164132 54170274 L1PA4 6152 + 6 6152 2610 1496 4 2 442 1 0 1570 2 1 723 8 9 184 0 1 1700 0 6 12 chain 34322 chr4 191154276 + 54170285 54171259 L1PA7 6471 - 4295 5283 10117 402 1 5 139 1 0 4 0 1 341 6 12 33 0 4 47 chain 25704 chr4 191154276 + 54188221 54188606 MER41B 635 + 0 425 101270 127 1 2 12 33 29 194 4 47 14 chain 551160 chr4 191154276 + 54194898 54200929 L1PA2 6032 + 0 6031 1292 908 1 2 8 1 0 3633 1 0 1467 0 1 12 chain 6127 chr4 191154276 + 54201410 54201483 L1MC4 1079 + 678 751 184212 73 chain 28568 chr4 191154276 + 54204736 54205046 AluYa5 310 - 0 310 90877 310 chain 497825 chr4 191154276 + 54206156 54212274 L1PA6 6164 + 2 6160 6967 110 21 7 20 15 0 10 14 29 21 5 11 299 2 1 423 0 25 26 0 1 161 31 42 226 15 15 904 6 7 924 0 7 736 0 5 877 0 1 425 0 3 684 11 8 144 2 0 6 chain 14336 chr4 191154276 + 54219777 54220004 LTR12C 1709 - 832 1059 143440 40 1 0 64 15 0 7 2 17 73 5 6 20 chain 1167 chr4 191154276 + 54220064 54220099 LTR12C 1709 - 800 835 158678 35 chain 24075 chr4 191154276 + 54229722 54230011 AluYc 301 + 4 289 109899 59 2 0 56 1 3 97 4 0 70 chain 16405 chr4 191154276 + 54252950 54253152 MER107 203 - 0 202 137192 202 chain 546594 chr4 191154276 + 54270187 54276304 L1PA3long 6157 - 8 6153 1870 331 1 0 504 0 4 597 0 1 728 7 5 81 0 2 1346 0 1 68 0 15 1845 0 4 40 0 4 569 chain 7640 chr4 191154276 + 54319731 54319825 Tigger1 2417 + 998 1092 173289 94 chain 7794 chr4 191154276 + 54321792 54321921 HSMAR2 1300 - 1164 1296 172339 41 5 7 24 10 11 49 chain 539364 chr4 191154276 + 54332540 54338656 L1PA4 6152 + 18 6143 2916 113 0 4 266 0 8 98 16 0 27 0 2 255 0 1 77 0 1 971 1 0 361 0 2 69 0 1 1643 0 1 22 0 1 363 0 1 236 1 0 760 0 5 837 chain 16467 chr4 191154276 + 54360226 54360562 THE1B 368 + 0 350 137017 102 92 93 5 1 0 10 0 4 10 11 19 62 0 1 5 0 1 38 chain 55830 chr4 191154276 + 54369243 54370018 Tigger1 2417 - 672 1452 55232 54 2 1 313 8 13 21 8 7 35 0 1 5 1 0 165 11 10 81 0 3 71 chain 3197 chr4 191154276 + 54372688 54372724 MIR 256 + 98 134 220987 36 chain 543267 chr4 191154276 + 54430804 54436841 L1PA3long 6157 + 5 6156 2301 147 0 1 68 4 0 143 0 1 403 8 136 1488 0 4 1695 15 0 2061 1 0 4 chain 44812 chr4 191154276 + 54465278 54465817 MER41A 554 + 13 554 63278 15 0 1 327 0 1 197 chain 27276 chr4 191154276 + 54472199 54472626 L1PA15 4387 + 1605 2046 95352 27 10 11 38 14 19 12 33 43 41 2 0 250 chain 26068 chr4 191154276 + 54476600 54476904 AluY 311 + 8 307 99758 267 1 0 10 4 0 22 chain 535034 chr4 191154276 + 54529959 54536439 L1PA7 6471 - 7 6471 3587 115 1 0 281 0 1 252 1 0 191 0 3 499 33 9 158 1 0 1335 0 1 95 0 1 63 0 5 249 0 3 103 0 4 39 0 1 184 0 1 52 0 9 109 1 0 64 14 0 243 1 0 304 8 6 87 13 7 126 2 0 230 1 3 1016 0 1 209 0 5 195 5 4 4 0 1 196 chain 24342 chr4 191154276 + 54553842 54554187 L1PA8 5853 + 5523 5853 108407 41 1 0 45 2 0 70 1 0 14 1 0 13 0 1 37 20 18 79 9 0 12 chain 26143 chr4 191154276 + 54565532 54565874 THE1A 353 - 3 343 99431 136 13 12 92 1 0 100 chain 126895 chr4 191154276 + 54565884 54567454 THE1A-int 1579 - 0 1574 28840 142 9 10 283 2 3 204 7 8 96 0 1 827 chain 28431 chr4 191154276 + 54567459 54567814 THE1A 353 - 0 353 91460 151 1 0 92 2 1 109 chain 392561 chr4 191154276 + 54591433 54595828 L1PA3long 6157 + 1723 6136 10375 308 1 0 4 0 1 1910 0 1 412 1 5 966 10 24 463 2 1 318 chain 15644 chr4 191154276 + 54600270 54600481 L1PA6 6164 - 2 212 139451 9 1 0 9 0 1 125 9 8 58 chain 129672 chr4 191154276 + 54603323 54604755 L1PA3long 6157 + 2514 3946 28164 1432 chain 198868 chr4 191154276 + 54604755 54606965 L1PA3long 6157 + 3947 6157 19292 934 0 1 1125 5 4 146 chain 15618 chr4 191154276 + 54607306 54607660 THE1B 368 + 9 368 139528 99 130 136 62 14 13 49 chain 34435 chr4 191154276 + 54628459 54628835 L1PA4 6152 + 5765 6141 77012 376 chain 8184 chr4 191154276 + 54658278 54658374 LTR9B 643 - 61 171 170047 62 0 14 34 chain 2851 chr4 191154276 + 54680964 54681012 MLT1J 494 + 144 191 227843 21 6 0 6 0 5 15 chain 547737 chr4 191154276 + 54689799 54695949 L1PA3long 6157 - 0 6152 1734 773 1 0 2125 0 3 72 0 1 472 0 1 534 1 0 1136 4 3 1032 chain 516418 chr4 191154276 + 54699522 54705667 L1PA6 6164 + 0 6160 5536 127 0 2 438 1 0 388 0 1 118 5 6 6 0 3 166 0 1 950 15 17 110 0 1 183 0 1 206 11 12 845 0 1 75 0 1 45 2 0 946 2 6 384 1 0 4 0 1 664 1 0 452 chain 7244 chr4 191154276 + 54705676 54705761 MSTA-int 1630 + 1545 1630 175809 85 chain 546732 chr4 191154276 + 54743283 54749302 L1PA2 6032 + 0 6031 1860 256 1 0 317 0 1 546 0 1 1852 0 1 77 0 1 89 0 4 343 0 1 369 1 2 561 0 3 1607 chain 4677 chr4 191154276 + 54756969 54757074 MER20 218 - 86 180 198788 34 39 28 32 chain 47151 chr4 191154276 + 54762776 54763294 L1PA3long 6157 + 5639 6157 61088 518 chain 3638 chr4 191154276 + 54779003 54779051 MADE1 96 + 33 96 213002 12 0 15 36 chain 130154 chr4 191154276 + 54799868 54801334 L1PA4 6152 + 4684 6151 28057 1220 0 1 246 chain 151215 chr4 191154276 + 54804827 54806610 L1PA7 6471 + 4673 6470 24446 329 0 1 200 2 1 7 0 1 18 0 6 104 0 7 706 2 3 251 0 1 4 1 0 8 1 2 137 2 0 11 chain 15737 chr4 191154276 + 54806610 54807010 L1PREC2 3366 + 2713 3075 138676 39 2 0 54 1 0 40 54 42 16 9 6 11 3 1 12 0 3 9 40 25 35 6 4 41 3 1 7 1 0 4 1 0 12 chain 7441 chr4 191154276 + 54824146 54824251 MER82 654 - 463 569 174506 79 4 5 22 chain 185736 chr4 191154276 + 54834615 54836733 L1PA5 6144 - 2 2119 20440 6 7 0 245 0 1 589 0 4 46 0 1 290 1 0 516 0 1 418 chain 72411 chr4 191154276 + 54836733 54837719 L1P1 4361 + 3192 4019 47274 94 161 0 221 1 2 388 0 1 121 chain 13539 chr4 191154276 + 54836834 54836986 L1PA3long 6157 + 6005 6157 146216 152 chain 29427 chr4 191154276 + 54886245 54886670 LTR7B 505 + 0 498 86945 105 1 11 58 16 78 26 1 3 46 1 2 36 1 0 76 14 13 44 chain 203184 chr4 191154276 + 54887174 54889848 HERVH-int 3825 + 765 3825 18980 16 2 0 6 11 16 177 7 23 168 1 4 47 11 1 81 0 3 124 9 0 171 0 1 4 1 0 172 0 1 46 0 1 55 1 0 210 4 9 277 15 15 380 0 3 36 3 371 410 1 4 228 chain 30238 chr4 191154276 + 54891283 54891702 LTR7B 505 + 0 494 84089 108 0 10 28 0 2 27 0 38 12 3 27 26 0 2 43 0 1 41 5 4 72 16 15 38 chain 27291 chr4 191154276 + 54898423 54898727 SVA_D 2077 + 0 329 95297 20 4 0 14 0 29 266 chain 15407 chr4 191154276 + 54907996 54908188 L1PA7 6471 + 6279 6470 140178 29 1 2 149 2 0 11 chain 393457 chr4 191154276 + 54909623 54913975 L1PA4 6152 + 1789 6152 10339 738 0 3 250 0 4 399 1 0 1607 0 2 507 1 2 843 0 2 6 chain 3871 chr4 191154276 + 54937368 54937495 Tigger4a 237 + 7 134 209306 25 68 68 34 chain 6622 chr4 191154276 + 54957743 54957844 L1PB1 5432 + 5327 5422 180288 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 4516 chr4 191154276 + 54978511 54978564 L1MB3 1562 - 141 194 200604 53 chain 28412 chr4 191154276 + 54983140 54983445 AluYf4 310 - 5 310 91529 305 chain 6036 chr4 191154276 + 54989293 54989366 U13_ 108 - 30 103 184923 73 chain 185600 chr4 191154276 + 54994042 54996681 L1MA2 4263 - 212 2848 20453 85 1 0 12 12 18 73 3 0 54 3 0 147 1 0 77 5 1 15 11 12 64 2 1 94 0 1 458 0 1 24 5 6 257 1 0 138 4 2 71 0 2 41 30 41 14 0 1 205 5 0 76 4 0 23 10 11 56 1 0 73 1 0 4 0 1 13 9 8 98 1 0 69 4 0 150 1 2 13 38 40 42 0 2 4 1 0 36 chain 50231 chr4 191154276 + 54997622 54998170 L1PA3long 6157 - 0 548 58845 548 chain 43422 chr4 191154276 + 55001527 55002120 L1MA4 2864 + 1410 2012 64903 266 26 25 39 0 8 55 0 1 136 4 5 67 chain 50066 chr4 191154276 + 55007455 55008207 L1M1 2793 + 1061 1802 58968 58 2 7 47 21 20 57 4 0 12 1 0 4 4 0 96 0 1 4 1 0 297 4 0 29 22 21 47 1 0 41 chain 4314 chr4 191154276 + 55013787 55013842 MER41B 635 + 481 539 203049 41 0 3 14 chain 3085 chr4 191154276 + 55015109 55015144 LTR12C 1709 - 991 1026 223209 35 chain 133096 chr4 191154276 + 55020304 55021854 LTR12C 1709 - 0 1709 27405 481 0 4 40 3 0 66 3 1 5 1 0 116 0 159 227 5 6 343 0 1 260 chain 12821 chr4 191154276 + 55040098 55040259 L1PA16 3655 + 2083 2243 148970 156 1 0 4 chain 6545 chr4 191154276 + 55060224 55060353 LTR54 533 - 284 422 180886 41 6 13 14 1 0 4 16 20 26 1 0 20 chain 8787 chr4 191154276 + 55067988 55068159 L1MC2 1988 + 1826 1988 166726 7 0 1 13 4 0 71 36 30 40 chain 34246 chr4 191154276 + 55076906 55077314 L1PA7 6471 + 6053 6461 77287 408 chain 553628 chr4 191154276 + 55109747 55115962 L1PA3long 6157 + 4 6157 992 1705 0 5 750 3 0 475 0 1 351 3 1 687 4 2 381 0 4 92 0 3 619 1 0 298 1 0 163 65 0 413 1 0 203 chain 27689 chr4 191154276 + 55145736 55146277 L1PB1 5432 - 5 486 94083 5 2 0 18 1 0 13 1 0 21 1 0 23 3 1 15 1 0 4 2 0 19 16 6 6 1 0 7 0 1 8 1 0 43 1 0 16 2 1 11 0 1 41 2 0 8 10 6 6 1 0 13 1 0 10 0 5 18 37 0 39 1 0 21 1 0 44 3 6 17 0 1 27 chain 12539 chr4 191154276 + 55150540 55150719 MSTA 426 - 15 212 150082 63 7 6 18 5 24 86 chain 33791 chr4 191154276 + 55157611 55158105 L1PA15 4387 + 3832 4314 77953 59 3 1 40 1 0 172 1 0 26 1 0 55 1 0 16 0 2 4 4 0 8 1 0 50 8 5 44 chain 29077 chr4 191154276 + 55167915 55168263 L1PA6 6164 + 5816 6162 88652 158 2 0 188 chain 313042 chr4 191154276 + 55168266 55172435 L1PB1 5432 + 755 4909 12890 11 0 5 144 7 8 138 0 12 97 2 1 232 2 0 5 25 12 261 1 0 3 6 0 677 13 17 63 4 1 8 0 4 7 0 5 21 10 16 47 0 4 275 5 4 102 36 37 23 1 2 15 41 6 71 7 9 470 5 1 151 0 7 298 0 2 590 5 6 9 4 0 277 chain 149015 chr4 191154276 + 55190973 55192736 SVA_D 2077 - 12 2077 24749 523 1 0 109 0 303 87 7 9 49 0 38 31 2 0 15 2 0 66 40 0 100 0 6 479 0 5 214 2 7 17 12 0 7 chain 370313 chr4 191154276 + 55208592 55213745 L1PB1 5432 + 24 5404 11084 19 16 17 187 0 1 274 45 46 194 2 1 374 1 0 6 0 1 130 2 7 114 45 284 174 1 4 82 6 12 49 12 17 483 11 8 11 0 1 323 2 0 304 0 1 34 1 0 140 4 0 405 2 6 66 0 1 52 7 8 58 19 18 20 1 0 84 0 1 181 1 0 228 0 1 164 9 6 182 13 14 277 0 4 5 1 2 8 4 1 24 26 20 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 6 4 7 9 0 10 14 11 14 2 0 24 1 0 21 1 0 13 chain 3958 chr4 191154276 + 55236420 55236582 MER3 215 + 5 88 208002 45 101 22 16 chain 104012 chr4 191154276 + 55253531 55255055 L1PB1 5432 - 12 1416 35732 16 1 0 13 1 0 21 1 0 24 2 0 11 19 16 22 14 3 14 1 0 26 1 2 16 1 0 15 2 1 50 18 12 10 12 10 22 93 0 11 0 3 395 0 2 81 1 2 88 4 0 518 chain 78525 chr4 191154276 + 55275157 55276055 MER11D 897 - 0 897 44255 198 0 1 409 5 0 196 0 2 11 0 1 79 chain 43666 chr4 191154276 + 55284271 55284827 MER41A 554 - 0 554 64609 78 2 7 41 0 1 328 1 2 9 9 0 88 chain 30428 chr4 191154276 + 55288594 55289047 MLT2A1 477 + 0 463 83580 79 5 18 71 7 4 213 4 0 8 4 0 8 12 0 14 5 25 23 chain 79566 chr4 191154276 + 55315774 55316831 MER11B 1079 + 0 1042 43797 36 11 4 57 13 1 218 1 18 400 16 1 33 3 5 103 1 0 4 0 1 161 chain 246166 chr4 191154276 + 55317068 55320096 L1P3 4156 + 0 3049 16433 251 2 1 67 2 1 294 6 3 35 0 1 78 0 4 11 0 2 307 0 5 147 5 6 47 1 0 16 0 1 195 0 10 273 0 1 40 0 1 374 0 14 365 0 1 84 15 1 413 chain 70841 chr4 191154276 + 55325918 55326920 MER11A 1151 + 0 1151 47996 61 5 104 65 0 4 60 4 0 87 9 10 4 1 0 45 9 11 86 0 1 144 5 8 106 10 13 26 17 48 28 7 17 223 chain 422472 chr4 191154276 + 55326920 55332433 L1PA6 6164 + 977 6156 9476 686 12 13 4 1 0 184 309 0 467 13 0 858 0 1 48 0 1 216 0 3 71 1 9 165 1 0 45 6 5 99 0 1 82 0 1 245 31 0 138 1 0 16 0 1 266 13 27 15 1 0 203 7 0 471 0 4 184 0 2 209 1 2 279 5 6 10 8 0 142 chain 74745 chr4 191154276 + 55332820 55333833 MER11A 1151 + 0 1151 46139 58 1 100 41 1 0 95 12 8 141 0 1 90 12 13 135 6 9 128 9 43 46 0 9 96 5 1 137 chain 2696 chr4 191154276 + 55353087 55353142 MLT1A0 366 + 2 51 230266 19 13 7 23 chain 30558 chr4 191154276 + 55353183 55353501 AluYb8 318 - 0 318 83310 318 chain 5011 chr4 191154276 + 55381390 55381453 MSTD 398 - 44 106 195009 27 1 0 35 chain 552634 chr4 191154276 + 55395104 55401258 L1PA3long 6157 - 0 6157 1118 2212 1 2 380 1 3 389 0 1 2179 1 0 991 chain 15681 chr4 191154276 + 55464490 55464676 MER57-int 2662 + 2140 2328 139327 114 0 1 53 0 1 19 chain 144027 chr4 191154276 + 55465401 55467518 MER57-int 2662 - 1 2134 25475 5 1 0 31 3 0 5 36 31 7 1 0 23 4 1 10 1 0 5 1 0 26 27 13 45 1 0 4 36 31 13 5 0 11 1 6 23 1 0 32 3 0 7 1 0 23 0 1 53 0 1 336 12 9 268 10 37 4 0 1 76 14 24 26 0 1 62 0 1 29 1 2 7 0 2 204 8 6 6 0 2 44 0 4 24 0 1 19 0 1 179 1 9 342 chain 30622 chr4 191154276 + 55471345 55471759 MER57A1 433 - 0 433 83166 148 2 3 193 4 22 67 chain 23393 chr4 191154276 + 55472126 55472416 AluY 311 + 4 295 113681 116 6 7 168 chain 29208 chr4 191154276 + 55482436 55482741 AluYa8 305 + 0 305 88014 305 chain 96717 chr4 191154276 + 55498521 55499775 LTR12C 1709 + 0 1709 37642 466 2 0 5 0 3 176 0 485 80 44 13 79 4 5 308 6 5 84 chain 25541 chr4 191154276 + 55532435 55532732 AluSc 308 - 0 297 102045 297 chain 3644 chr4 191154276 + 55551171 55551211 MADE1 96 - 54 94 212898 40 chain 13171 chr4 191154276 + 55590820 55591013 MER30 238 - 0 207 147578 47 2 0 67 4 17 24 6 9 43 chain 3048 chr4 191154276 + 55600554 55600590 MIR 256 + 181 217 224023 36 chain 19363 chr4 191154276 + 55637648 55637997 THE1D 372 + 2 360 129039 54 11 7 6 0 4 25 8 6 58 0 1 20 34 41 98 13 16 22 chain 29132 chr4 191154276 + 55640249 55640556 AluYk11 308 - 1 308 88400 307 chain 3656 chr4 191154276 + 55649697 55649735 tRNA-Ile-ATA 38 - 0 38 212667 38 chain 117182 chr4 191154276 + 55663728 55665116 L1PA6 6164 - 2 1382 32065 6 4 0 537 0 1 303 1 0 386 8 4 143 chain 171270 chr4 191154276 + 55665116 55667120 L1PA6 6164 + 2758 4777 21905 279 0 1 107 0 5 34 4 6 227 0 1 238 1 5 41 0 3 944 1 0 128 chain 113220 chr4 191154276 + 55670570 55672228 L1PB1 5432 + 3817 5423 33306 14 2 1 120 4 2 9 14 17 134 0 1 376 0 1 17 0 2 110 0 1 295 0 4 58 39 41 82 42 12 24 1 0 8 1 0 12 5 1 8 2 0 52 1 0 19 1 0 43 1 0 15 3 0 6 16 6 19 3 0 19 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 515307 chr4 191154276 + 55673244 55679383 L1PA6 6164 + 0 6157 5636 63 1 2 400 1 0 26 1 2 61 1 0 520 7 8 583 14 3 401 1 0 264 0 2 57 0 1 117 0 1 666 2 1 11 0 1 228 0 1 102 2 3 1119 0 1 390 0 8 149 0 12 115 0 4 156 20 4 415 4 6 14 0 17 117 5 0 106 chain 7169 chr4 191154276 + 55679383 55679484 Tigger1a_Art 216 - 105 208 176275 62 1 3 38 chain 525875 chr4 191154276 + 55690564 55697081 L1PA7 6471 + 0 6467 4594 409 1 0 65 2 0 106 0 1 1204 0 1 294 7 8 91 84 0 229 12 7 97 0 1 119 0 2 60 0 1 405 0 4 196 0 9 62 2 0 402 0 11 52 12 10 1270 0 1 102 4 1 75 2 1 325 1 0 188 0 3 128 8 26 141 3 1 98 6 6 103 0 1 141 1 0 10 chain 44280 chr4 191154276 + 55705011 55705766 L1PA15 4387 + 3633 4355 63845 180 2 0 14 4 0 64 3 1 19 12 13 9 1 0 54 11 1 112 10 9 22 1 0 53 2 1 16 32 27 39 10 7 11 0 1 26 2 0 15 14 11 17 chain 3589 chr4 191154276 + 55756969 55757008 MIR 256 + 63 102 213829 39 chain 22602 chr4 191154276 + 55757050 55757336 AluY 311 + 2 289 117580 130 11 12 145 chain 10073 chr4 191154276 + 55785573 55785689 SVA_B 1603 - 0 116 160207 116 chain 178221 chr4 191154276 + 55788154 55790097 L1PA2 6032 + 4089 6032 21143 1943 chain 22764 chr4 191154276 + 55808685 55808927 AluYa5 310 + 67 309 116760 242 chain 77337 chr4 191154276 + 55835020 55835872 L1PA4 6152 - 180 1034 44811 677 0 1 154 0 1 21 chain 93378 chr4 191154276 + 55859500 55860827 LTR12C 1709 + 0 1709 38542 193 0 1 84 16 18 42 10 53 73 8 7 34 9 10 135 0 278 183 1 0 5 10 8 91 52 13 228 0 101 64 5 4 84 chain 26853 chr4 191154276 + 55888738 55889022 AluYa5 310 + 12 296 96798 284 chain 48563 chr4 191154276 + 55891538 55892120 LTR10C 591 + 10 591 60069 452 3 0 45 0 2 82 chain 4845 chr4 191154276 + 55895028 55895081 U5 65 + 0 53 196836 53 chain 532504 chr4 191154276 + 55907478 55913581 L1PA4 6152 + 7 6140 3909 118 3 17 727 1 0 151 1 0 32 0 1 183 0 2 90 10 14 164 0 1 1943 0 1 240 0 2 247 0 1 121 0 1 1320 0 1 65 0 1 487 0 1 191 0 2 9 chain 170124 chr4 191154276 + 55923903 55925756 L1PA2 6032 - 2184 4037 22014 1853 chain 201975 chr4 191154276 + 55925756 55927957 L1PA2 6032 + 3833 6032 19066 1423 2 0 776 chain 29017 chr4 191154276 + 55928417 55928792 THE1C 375 + 1 375 88915 349 8 7 18 chain 3553 chr4 191154276 + 55972356 55972460 Tigger4a 237 + 3 114 214507 19 0 7 19 11 12 11 27 26 17 chain 155891 chr4 191154276 + 55994808 55996551 L1PA5 6144 + 4379 6132 23871 1214 0 1 504 6 15 19 chain 30558 chr4 191154276 + 55998570 55998888 AluYb8 318 - 0 318 83309 318 chain 23738 chr4 191154276 + 56005073 56005376 AluSg7 307 + 0 307 111847 32 1 0 34 0 1 65 1 0 130 1 5 7 0 1 32 chain 479847 chr4 191154276 + 56030447 56036404 L1PA6 6164 - 2 6164 7734 840 0 4 204 0 1 599 0 1 475 0 1 43 0 214 250 3 0 230 1 0 56 0 4 48 40 12 63 0 1 456 4 0 335 18 4 236 4 5 610 0 4 20 1 0 145 0 1 496 0 17 218 1 0 34 0 1 85 8 0 102 13 14 16 11 19 195 2 8 95 chain 372523 chr4 191154276 + 56057104 56062291 L1PA8 5853 + 1137 5847 11010 321 0 1 192 0 1 516 0 1 215 1 2 95 0 4 206 7 8 189 1 0 497 3 0 6 0 4 63 0 10 414 0 1 121 5 0 315 0 4 17 1 0 28 6 8 143 13 14 471 6 5 44 0 1 30 0 2 86 591 86 6 0 4 219 11 17 11 0 1 48 1 0 44 2 0 62 12 11 7 1 0 6 0 1 45 2 1 19 1 0 87 chain 48328 chr4 191154276 + 56061147 56061707 L1PA6 6164 - 29 588 59842 175 1 0 384 chain 32959 chr4 191154276 + 56067959 56068393 MLT2A1 477 + 11 477 79281 157 5 2 48 0 1 166 4 0 7 8 46 39 chain 469698 chr4 191154276 + 56072091 56078411 L1PA5 6144 + 0 6144 8042 135 17 31 975 41 32 474 5 6 30 20 56 72 0 1 216 0 1 16 0 1 83 0 1 41 311 0 430 13 400 738 1 2 605 1 5 315 1 0 294 0 4 53 5 6 607 307 0 514 chain 32043 chr4 191154276 + 56094943 56095326 L1PA5 6144 - 0 383 80792 383 chain 288452 chr4 191154276 + 56097767 56101101 L1P2 5180 - 2 3344 14127 4 1 0 38 1 0 46 1 0 705 0 1 594 1 7 536 0 1 613 0 1 313 0 2 481 chain 15280 chr4 191154276 + 56101649 56101833 L1P1 4361 - 4172 4356 140537 184 chain 85907 chr4 191154276 + 56107487 56108860 LTR12C 1709 + 0 1709 41190 105 1 2 83 86 111 23 1 0 55 73 95 135 5 6 82 0 161 213 0 47 28 0 1 68 44 13 42 3 0 177 0 102 64 15 26 70 chain 29374 chr4 191154276 + 56123494 56123835 L1PA7 6471 + 6127 6470 87190 195 0 5 138 3 0 5 chain 6476 chr4 191154276 + 56138446 56138542 MADE1 96 - 0 96 181422 40 11 11 45 chain 41735 chr4 191154276 + 56144134 56144728 LTR43 600 - 1 588 66980 96 1 0 66 5 2 103 0 1 172 2 1 74 22 3 27 6 22 20 chain 37665 chr4 191154276 + 56146516 56146965 LTR7 482 - 0 482 72593 48 13 15 141 1 32 246 chain 69757 chr4 191154276 + 56146965 56147943 MER11C 1089 + 40 1059 48487 181 0 34 56 4 6 69 1 0 177 53 52 75 1 5 10 1 0 32 0 1 47 0 3 77 0 1 54 1 0 139 chain 5808 chr4 191154276 + 56160656 56160737 U6 107 + 0 79 187060 41 0 1 6 3 0 31 chain 503611 chr4 191154276 + 56163328 56169448 L1PA6 6164 + 0 6160 6627 45 9 11 133 0 1 87 0 1 6 4 3 161 9 1 10 5 6 83 12 21 218 0 17 273 0 8 189 0 1 746 1 2 385 6 1 109 0 1 277 0 2 82 5 6 8 4 0 295 0 1 228 0 1 809 0 1 455 4 3 621 1 0 225 0 12 615 chain 2990 chr4 191154276 + 56188470 56188523 MER5A1 166 + 25 74 225233 13 11 7 29 chain 62970 chr4 191154276 + 56206969 56207769 HERVIP10FH-int 2884 + 394 1198 51460 69 0 2 108 0 1 147 0 1 208 0 1 4 1 0 263 chain 61734 chr4 191154276 + 56219338 56220118 LTR12 884 + 0 884 52021 25 1 0 30 0 107 97 0 1 118 2 0 78 12 11 417 chain 25203 chr4 191154276 + 56242082 56242371 AluSp 311 - 12 301 103726 289 chain 31656 chr4 191154276 + 56245088 56245533 LTR3B_ 500 - 51 500 81395 43 2 0 5 1 5 45 8 7 45 19 20 117 5 6 32 0 1 123 chain 5735 chr4 191154276 + 56278803 56278893 HY3 101 + 1 90 187774 33 8 7 49 chain 12043 chr4 191154276 + 56280617 56280776 L1PA8 5853 - 0 157 152015 93 1 0 19 2 1 44 chain 27151 chr4 191154276 + 56307354 56307849 L1PB3 3668 + 3110 3614 95753 45 8 9 30 0 1 24 2 7 24 0 32 9 1 0 97 23 22 68 20 4 18 0 1 6 3 0 21 3 1 37 7 3 13 1 0 13 7 4 15 chain 19444 chr4 191154276 + 56335296 56335552 AluSp 311 - 16 301 128838 105 10 40 113 1 0 27 chain 2818 chr4 191154276 + 56350074 56350130 Tigger4a 237 + 1 194 228495 25 7 0 10 0 144 14 chain 7424 chr4 191154276 + 56360690 56360871 L1PB1 5432 + 5261 5422 174621 20 1 0 15 1 0 5 60 45 24 1 0 23 1 0 11 1 0 18 chain 6214 chr4 191154276 + 56367770 56367845 HY1 111 - 7 81 183451 25 1 0 49 chain 11587 chr4 191154276 + 56411234 56411370 L1PA5 6144 - 1 137 153942 136 chain 59734 chr4 191154276 + 56417785 56418574 LTR12 884 - 15 884 52974 218 10 13 167 3 2 29 0 1 62 2 0 36 0 1 17 0 1 18 0 4 11 12 87 29 2 0 173 chain 26347 chr4 191154276 + 56424381 56424754 THE1C 375 + 0 375 98627 68 4 14 104 19 12 152 1 0 25 chain 27622 chr4 191154276 + 56431462 56431834 THE1C 375 - 0 375 94292 26 1 0 25 0 1 108 1 2 26 1 2 158 5 6 21 chain 20633 chr4 191154276 + 56446035 56446302 AluSp 311 - 34 300 125181 63 7 6 57 0 3 6 3 0 131 chain 31900 chr4 191154276 + 56448775 56449132 L1PA5 6144 - 0 357 81012 357 chain 22069 chr4 191154276 + 56484382 56484666 L1PA8 5853 - 0 279 119926 93 1 0 19 2 1 47 3 0 12 1 0 69 0 1 37 chain 559414 chr4 191154276 + 56485331 56491348 L1PA2 6032 + 13 6032 393 4958 3 4 126 0 1 930 chain 87947 chr4 191154276 + 56496851 56498117 L1PB2 3958 + 2574 3838 40396 166 0 1 184 24 24 106 0 4 64 3 4 180 2 0 53 6 9 69 2 0 13 5 0 51 0 3 40 1 0 31 0 1 40 1 0 60 3 2 70 2 0 25 47 46 18 chain 3302 chr4 191154276 + 56513052 56513093 MADE1 96 - 54 96 218933 15 0 1 26 chain 2584 chr4 191154276 + 56515185 56515258 L1MD2 1676 - 22 94 231855 19 31 30 23 chain 176897 chr4 191154276 + 56543289 56545907 L1PB1 5432 + 978 4455 21263 103 0 5 108 7 5 129 15 16 39 52 61 168 0 1 205 4 0 26 0 4 64 0 4 36 4 5 68 1 2 109 2 0 79 8 9 27 5 0 16 0 3 7 3 0 7 0 2 92 0 7 110 5 0 36 10 684 136 87 0 11 6 93 174 0 1 103 2 0 170 0 1 9 29 180 112 10 5 82 0 21 142 chain 27886 chr4 191154276 + 56548430 56548811 LOR1a 498 + 0 381 93410 47 6 7 42 1 0 112 1 0 59 5 6 108 chain 102020 chr4 191154276 + 56548846 56550045 L1PA7 6471 - 7 1215 36256 401 0 1 264 0 3 101 2 1 68 0 5 102 5 6 256 chain 459687 chr4 191154276 + 56557732 56563112 L1PA6 6164 + 0 6161 8412 88 0 735 83 0 4 164 0 1 370 0 1 647 0 13 107 0 2 119 1 0 534 0 16 180 2 0 56 0 1 56 1 2 12 1 0 19 5 6 7 1 0 835 1 0 218 0 3 414 0 1 612 0 1 8 0 5 437 0 1 78 0 1 324 chain 53080 chr4 191154276 + 56565805 56566693 L1PA8 5853 + 4906 5853 56969 31 84 81 47 86 150 25 0 4 249 0 1 25 4 5 40 1 0 44 2 0 74 1 0 6 2 0 52 2 1 19 1 0 93 chain 537344 chr4 191154276 + 56573825 56579952 L1PA4 6152 + 10 6143 3266 17 4 0 1788 12 10 491 0 4 66 0 4 226 7 8 1927 0 1 544 0 1 941 0 1 104 chain 29256 chr4 191154276 + 56594476 56594784 AluYa5 310 - 2 310 87757 308 chain 147499 chr4 191154276 + 56603864 56606155 L1PB3 3668 + 1479 3566 24961 139 5 4 6 0 5 142 1 0 22 0 1 123 6 14 146 181 0 33 4 0 206 1 0 347 5 4 45 0 1 5 0 1 210 0 1 54 2 0 17 0 1 5 1 2 47 5 0 230 1 0 82 1 3 13 4 3 59 58 37 14 5 3 23 18 14 25 chain 75184 chr4 191154276 + 56607547 56608683 L1PB1 5432 + 4257 5414 45935 40 0 1 146 2 0 5 0 2 143 7 10 23 2 0 78 0 2 105 0 1 49 5 58 171 12 15 8 10 0 42 2 0 3 2 0 9 3 1 50 1 0 58 4 3 15 5 0 16 9 0 15 3 1 5 1 0 14 2 0 23 2 1 23 1 0 11 1 0 10 chain 21591 chr4 191154276 + 56627019 56627279 L1PA7 6471 + 6207 6470 121801 248 1 4 11 chain 30942 chr4 191154276 + 56676742 56677231 L1PA11 4918 - 340 810 82611 11 2 0 13 47 37 9 4 0 20 1 0 19 2 0 62 2 0 12 3 2 65 5 0 99 0 7 21 0 1 92 chain 61814 chr4 191154276 + 56679191 56680128 L1PB1 5432 + 4525 5422 51989 102 3 0 471 6 7 9 3 0 21 1 0 11 1 0 11 6 2 9 2 0 52 2 1 9 7 6 44 1 0 16 23 12 18 18 10 10 2 0 26 1 0 19 1 0 13 1 0 18 chain 23011 chr4 191154276 + 56691974 56692268 AluSq2 311 + 10 301 115572 42 10 6 75 0 1 167 chain 63359 chr4 191154276 + 56701027 56702012 L1PB1 5432 - 20 944 51293 10 1 0 11 1 0 21 1 0 24 2 0 9 0 1 4 1 0 5 3 1 18 24 12 16 1 0 44 1 0 15 2 1 52 2 0 9 2 0 3 2 0 10 1 0 8 1 0 24 1 0 9 36 7 115 0 1 5 1 0 270 0 2 84 12 9 124 chain 559371 chr4 191154276 + 56707911 56714058 L1PA3long 6157 + 6 6157 395 304 0 1 2859 0 1 866 0 1 834 0 1 1284 chain 45582 chr4 191154276 + 56716030 56716819 LTR1 825 - 31 812 62426 176 12 14 46 0 2 14 10 8 16 1 0 22 2 0 116 69 53 11 4 12 6 0 1 12 18 62 19 44 0 191 chain 25547 chr4 191154276 + 56723334 56723637 AluYc3 301 - 2 301 102007 291 4 0 8 chain 34468 chr4 191154276 + 56747564 56748034 MER4A1 472 - 0 472 76964 26 1 0 184 21 0 8 5 28 153 0 1 72 chain 24480 chr4 191154276 + 56760780 56761064 AluSp 311 - 4 288 107654 284 chain 4783 chr4 191154276 + 56773616 56773687 MADE1 96 - 0 96 197536 24 1 26 46 chain 16694 chr4 191154276 + 56775435 56775785 L1PB1 5432 + 5105 5424 136420 11 3 0 22 1 0 9 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 21 13 18 8 5 14 2 0 24 1 0 21 1 0 8 6 5 16 1 0 4 chain 45281 chr4 191154276 + 56793455 56794007 MER41A 554 + 0 554 62740 99 0 1 30 1 2 422 chain 79496 chr4 191154276 + 56801694 56802715 MER11C 1089 + 0 1052 43828 183 0 1 75 0 3 57 1 18 225 36 37 176 1 9 107 0 1 160 chain 15311 chr4 191154276 + 56803646 56803838 L1MA3 4352 - 2311 2511 140458 103 0 4 51 0 4 38 chain 4662 chr4 191154276 + 56803850 56803902 MSTA 426 + 356 408 198933 52 chain 37057 chr4 191154276 + 56811742 56812191 LTR7 482 + 0 482 73445 266 10 43 173 chain 15335 chr4 191154276 + 56818827 56819097 Tigger3a 397 - 71 334 140380 66 6 4 64 1 0 61 31 32 22 4 0 9 1 0 5 chain 24967 chr4 191154276 + 56826813 56827115 AluYa5 310 + 5 305 104974 59 16 14 227 chain 13126 chr4 191154276 + 56861478 56861645 MER107 203 - 30 200 147741 9 0 1 52 0 2 106 chain 4701 chr4 191154276 + 56861746 56861866 MER58B 340 - 167 267 198529 43 1 0 4 46 27 26 chain 10215 chr4 191154276 + 56914198 56914365 AluSq 315 + 10 315 159536 25 26 160 75 0 4 41 chain 235326 chr4 191154276 + 56938786 56941723 L1PA7 6471 - 14 2871 17008 134 5 4 9 1 2 559 1 0 43 6 7 42 100 0 40 0 3 14 1 0 235 1 2 30 3 2 49 0 1 183 2 21 63 1 0 59 1 0 376 0 1 4 1 0 129 0 1 75 0 1 5 2 1 527 1 0 235 chain 3161 chr4 191154276 + 56941834 56942004 L1MB7 1623 - 22 155 221720 4 1 0 7 1 0 30 103 69 12 1 0 11 chain 18468 chr4 191154276 + 56943247 56943597 THE1C 375 - 2 375 131589 24 9 8 93 65 75 34 0 4 27 18 27 62 0 1 18 chain 4104 chr4 191154276 + 56959079 56959127 MER33 330 + 242 290 205880 48 chain 8211 chr4 191154276 + 56963556 56963645 5S 121 + 1 90 169878 89 chain 83754 chr4 191154276 + 56974620 56975586 LTR13A 966 - 0 966 42009 200 1 0 136 3 0 553 0 4 73 chain 3590 chr4 191154276 + 57003462 57003505 Tigger3b 1229 - 1143 1186 213825 43 chain 10581 chr4 191154276 + 57013629 57013761 L1MB8 1703 - 121 253 157908 132 chain 9384 chr4 191154276 + 57037331 57037441 L1PA5 6144 + 6034 6144 163637 110 chain 13984 chr4 191154276 + 57041365 57041579 L1MA4 2864 - 530 740 144633 98 6 4 35 8 7 50 1 0 16 chain 34891 chr4 191154276 + 57055566 57055949 L1PA4 6152 - 1 384 76355 383 chain 56889 chr4 191154276 + 57056002 57056632 L1PA3long 6157 - 15 645 54607 630 chain 30305 chr4 191154276 + 57082864 57083182 AluYb8 318 + 0 318 83889 318 chain 51320 chr4 191154276 + 57087613 57088406 L1PB3 3668 + 2788 3521 58088 200 2 0 15 32 0 133 28 24 128 1 0 101 3 2 87 22 4 21 2 0 18 chain 8837 chr4 191154276 + 57092771 57092963 MSTB1 431 + 16 204 166452 11 0 2 28 5 7 35 4 0 24 28 18 12 1 5 13 1 3 30 chain 3531 chr4 191154276 + 57093741 57093781 MER58A 224 - 23 63 214868 40 chain 90568 chr4 191154276 + 57114742 57115720 L1PA2 6032 - 2 981 39445 339 0 1 639 chain 24701 chr4 191154276 + 57122268 57122626 THE1B 368 + 0 368 106432 169 1 0 29 35 45 44 0 1 80 chain 25012 chr4 191154276 + 57123841 57124611 MER4D1 891 + 342 816 104727 26 15 33 73 376 67 116 9 5 16 0 1 52 11 9 76 chain 21231 chr4 191154276 + 57130075 57130439 MSTA 426 - 0 408 123096 101 9 29 60 3 0 7 1 4 7 0 2 8 3 0 5 4 5 61 31 55 64 chain 28222 chr4 191154276 + 57130741 57131074 MER11B 1079 - 745 1079 92223 283 1 2 49 chain 12187 chr4 191154276 + 57145325 57145471 L1P1 4361 - 4211 4357 151465 146 chain 89077 chr4 191154276 + 57145472 57146461 L1PA4 6152 + 5149 6143 39976 155 0 4 299 0 1 535 chain 554713 chr4 191154276 + 57197420 57203548 L1PA3long 6157 - 0 6151 859 1538 0 1 254 0 8 1773 0 3 1125 0 5 285 0 3 281 0 2 194 0 3 18 3 0 46 0 4 80 4 0 223 2 0 135 0 1 14 0 2 153 chain 549769 chr4 191154276 + 57228916 57235032 L1PA4 6152 + 0 6134 1479 127 0 14 67 1 0 373 3 0 5 0 3 146 0 1 561 0 4 3055 0 4 1712 4 0 62 chain 4012 chr4 191154276 + 57236190 57236243 MLT1A0 366 + 2 53 207213 28 2 0 23 chain 6632 chr4 191154276 + 57239720 57239808 MER39 703 - 615 703 180226 9 1 0 74 0 1 4 chain 28158 chr4 191154276 + 57242952 57243247 AluYa5 310 + 1 296 92433 295 chain 29726 chr4 191154276 + 57252677 57252995 AluYb8 318 + 0 316 85735 311 2 0 5 chain 38936 chr4 191154276 + 57269699 57270227 MER1A 529 - 0 529 70821 64 7 9 195 7 0 99 1 0 26 1 0 43 2 10 83 chain 24585 chr4 191154276 + 57273474 57273775 AluSp 311 - 7 303 107062 10 5 0 286 chain 36788 chr4 191154276 + 57287123 57287660 MER1A 529 + 0 529 73811 14 16 23 46 10 14 58 2 0 36 15 0 261 2 0 7 1 0 54 0 1 15 chain 21282 chr4 191154276 + 57298709 57298969 AluY 311 + 40 298 122921 92 0 1 117 5 0 14 0 2 32 chain 25635 chr4 191154276 + 57303705 57304011 AluSc5 308 + 0 305 101562 32 1 0 273 chain 58868 chr4 191154276 + 57315380 57316484 L1PA8 5853 + 5039 5834 53477 45 0 2 307 3 12 119 313 0 30 11 10 44 2 0 74 1 0 5 4 3 49 3 2 19 2 1 73 chain 25041 chr4 191154276 + 57339652 57339952 AluSp 311 + 0 303 104590 94 0 3 206 chain 4443 chr4 191154276 + 57347831 57347907 Tigger1 2417 + 0 83 201422 41 16 23 19 chain 177330 chr4 191154276 + 57364370 57366545 L1PA7 6471 + 4238 6470 21221 258 16 20 203 0 1 98 0 4 133 1 0 60 1 3 42 3 2 133 0 4 18 0 32 18 0 2 282 1 5 62 0 7 48 4 5 20 0 2 346 0 1 66 1 2 61 3 2 120 1 2 14 3 0 147 3 0 9 chain 39722 chr4 191154276 + 57401394 57401853 LTR2 463 + 0 463 69725 61 0 3 303 0 1 95 chain 7625 chr4 191154276 + 57437269 57437400 Tigger3b 1229 - 504 624 173382 21 22 9 67 0 2 21 chain 169498 chr4 191154276 + 57453502 57456517 L1PB1 5432 - 8 2304 22116 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 12 10 7 19 20 8 4 1 0 15 1 0 44 1 0 18 1 0 50 2 0 11 16 11 9 1 0 24 13 11 51 1 0 5 0 1 428 8 9 103 0 1 128 314 5 249 309 0 385 86 4 185 12 14 148 2 6 67 0 2 14 0 6 16 0 15 11 19 4 118 chain 11340 chr4 191154276 + 57464939 57465249 THE1B 368 + 0 306 154921 13 2 0 34 36 44 17 8 9 22 8 7 30 40 38 16 1 0 10 1 0 36 8 2 28 chain 32991 chr4 191154276 + 57465562 57466021 L1PA8 5853 - 0 449 79232 92 6 5 11 2 1 43 3 6 7 7 0 9 1 0 71 2 0 44 1 0 160 chain 18091 chr4 191154276 + 57466021 57466234 L1PA8A 6298 + 5529 5741 132614 48 1 0 164 chain 6824 chr4 191154276 + 57470867 57470949 L1PB2 3958 + 3751 3832 178761 24 1 0 57 chain 52619 chr4 191154276 + 57471685 57472332 LTR6A 649 + 0 649 57226 64 1 0 39 0 2 52 0 1 277 1 0 193 0 1 20 chain 114284 chr4 191154276 + 57476122 57477730 L1PB1 5432 + 3821 5420 33002 140 0 1 104 0 2 22 0 1 46 0 1 294 5 0 177 8 14 91 1 0 83 3 11 35 6 0 295 1 0 8 1 0 10 20 14 19 0 2 18 1 10 12 3 6 44 1 0 11 29 16 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 34340 chr4 191154276 + 57483634 57484292 LTR1 825 - 22 742 77141 71 0 1 55 2 3 8 0 3 44 15 8 73 1 0 117 1 14 17 138 169 22 1 0 12 12 34 69 chain 974 chr4 191154276 + 57484417 57484490 MER83 447 - 48 122 156066 23 3 4 47 chain 24307 chr4 191154276 + 57484540 57484908 THE1C 375 - 0 375 108618 26 1 0 55 4 3 5 0 3 50 25 30 16 4 5 182 chain 1334 chr4 191154276 + 57485144 57485244 MER83 447 - 345 445 156066 100 chain 123156 chr4 191154276 + 57490045 57491617 THE1A-int 1579 + 0 1579 29988 140 0 1 35 25 26 236 21 19 14 9 10 449 1 2 280 4 8 254 0 1 104 chain 27202 chr4 191154276 + 57491617 57491970 THE1A 353 + 0 353 95589 77 0 1 32 1 0 92 1 0 106 6 7 38 chain 22035 chr4 191154276 + 57501667 57501985 AluYb8 318 + 0 317 120089 45 4 4 12 2 0 36 4 4 30 22 23 163 chain 4408 chr4 191154276 + 57503451 57503506 MLT1J2 417 - 278 335 201844 4 0 1 21 0 1 30 chain 127946 chr4 191154276 + 57559028 57560508 SVA_D 2077 - 4 2077 28580 654 0 303 62 1 53 8 0 2 30 0 1 10 20 62 122 0 196 562 3 0 8 chain 29849 chr4 191154276 + 57571327 57571721 MER51B 395 - 0 395 85289 141 0 2 7 1 0 98 10 10 137 chain 538001 chr4 191154276 + 57578811 57584935 L1PA5 6144 + 0 6144 3149 501 0 10 712 0 1 1089 0 1 221 0 1 1517 10 19 415 4 0 760 1 0 44 0 4 82 0 1 99 6 5 579 1 0 83 chain 9273 chr4 191154276 + 57587426 57587550 MER21A 919 + 14 136 164205 108 2 0 14 chain 21271 chr4 191154276 + 57601964 57602312 THE1B 368 - 0 368 122954 72 13 31 15 1 6 6 5 0 46 3 1 14 6 5 36 0 2 85 4 9 26 2 0 14 chain 34745 chr4 191154276 + 57611846 57612227 L1PA3long 6157 + 5775 6156 76551 381 chain 21422 chr4 191154276 + 57618105 57618401 AluY 311 + 0 309 122433 27 0 19 72 7 0 14 11 12 165 chain 8176 chr4 191154276 + 57626135 57626257 MER41B 635 + 511 635 170093 42 11 13 69 chain 20433 chr4 191154276 + 57652021 57652343 L1PA14 3548 - 83 390 125801 10 6 0 40 0 1 10 15 13 13 4 2 35 14 9 111 1 0 63 chain 30371 chr4 191154276 + 57658464 57658912 L1PB4 2604 - 679 1122 83736 14 1 0 14 0 2 6 1 0 68 0 1 5 2 1 30 8 0 68 12 13 90 0 3 13 1 0 115 chain 49967 chr4 191154276 + 57668672 57669260 L1PA7 6471 - 4 598 59044 408 0 4 88 0 2 92 chain 26955 chr4 191154276 + 57691717 57692070 THE1A 353 + 0 353 96429 89 0 2 19 1 0 37 0 1 50 2 0 155 chain 123464 chr4 191154276 + 57692070 57694597 THE1A-int 1579 + 0 1579 29895 43 1 2 446 954 0 438 3 4 159 39 40 9 2 3 166 1 2 43 0 1 223 chain 21243 chr4 191154276 + 57699855 57700178 AluSp 311 + 1 311 123044 48 1 0 4 5 4 63 5 0 92 35 29 70 chain 3337 chr4 191154276 + 57706783 57706823 MER57C2 434 - 0 40 218295 40 chain 5834 chr4 191154276 + 57708976 57709083 MER50 708 + 29 129 186821 27 1 5 13 16 5 50 chain 18964 chr4 191154276 + 57716275 57716538 L1PB2 3958 - 120 376 130196 62 2 1 20 6 0 70 3 4 64 1 0 35 chain 3923 chr4 191154276 + 57725383 57725432 MER2 342 - 131 180 208516 49 chain 23936 chr4 191154276 + 57748340 57748642 AluY 311 + 0 304 110712 6 0 4 121 10 8 165 chain 508742 chr4 191154276 + 57750489 57757809 L1PA6 6164 + 0 6162 6261 21 13 0 8 4 18 166 0 1 102 16 40 211 1 0 220 0 17 36 4 1 402 301 0 464 3 6 304 0 1 195 0 2 119 1 0 562 1 0 248 1 0 39 7 8 115 1 0 160 5 6 844 0 3 319 0 1 814 647 40 428 311 1 93 0 1 75 19 33 30 2 0 8 chain 6848 chr4 191154276 + 57813579 57813684 MER41A 554 - 14 125 178600 59 9 16 8 1 0 28 chain 58435 chr4 191154276 + 57814413 57815189 MER41-int 2638 - 3 787 53724 84 1 0 35 6 5 92 3 12 176 3 5 48 0 1 148 0 2 116 2 0 36 2 0 24 chain 43614 chr4 191154276 + 57816694 57817556 MER41A 554 - 0 554 64668 12 1 0 106 314 0 74 0 7 355 chain 11943 chr4 191154276 + 57825290 57825431 Tigger3a 397 + 185 326 152432 141 chain 25676 chr4 191154276 + 57830232 57830523 AluSp 311 - 11 302 101384 291 chain 4616 chr4 191154276 + 57839147 57839234 LTR8 732 + 605 690 199443 20 25 23 42 chain 20986 chr4 191154276 + 57920528 57920830 AluSc8 310 + 10 309 123968 122 16 14 115 0 1 12 11 9 26 chain 29608 chr4 191154276 + 58001577 58001886 AluYb8 318 - 9 318 86185 309 chain 46905 chr4 191154276 + 58004255 58004918 MER41-int 2638 - 1144 1814 61304 137 0 1 33 11 8 40 1 0 4 0 1 57 0 1 83 4 3 49 0 2 35 2 3 4 1 0 67 0 5 54 3 4 57 0 1 21 chain 12184 chr4 191154276 + 58007687 58007834 MER41B 635 - 7 154 151479 147 chain 15575 chr4 191154276 + 58010039 58010258 L1MA4A 3247 - 1512 1728 139654 103 1 0 56 7 5 52 chain 22058 chr4 191154276 + 58026347 58026664 THE1D 372 + 0 338 119983 72 1 11 9 0 1 11 0 1 75 11 13 45 2 8 29 0 1 62 chain 139881 chr4 191154276 + 58038669 58040267 SVA_D 2077 + 0 2076 26158 570 9 12 101 0 77 130 0 396 28 0 1 28 1 3 42 0 1 4 1 0 52 1 0 631 chain 81927 chr4 191154276 + 58046000 58046937 L1PA5 6144 - 9 946 42793 937 chain 29921 chr4 191154276 + 58060820 58061131 AluYb8 318 - 7 318 85039 311 chain 21645 chr4 191154276 + 58061262 58061504 L1PA3long 6157 + 5899 6142 121597 179 0 1 63 chain 3527 chr4 191154276 + 58078380 58078540 L1MA9 1812 + 1567 1694 214918 15 1 0 24 103 71 17 chain 35224 chr4 191154276 + 58087360 58087734 L1HS 6032 - 0 374 75893 374 chain 124886 chr4 191154276 + 58089932 58091364 SVA_D 2077 + 4 2075 29429 6 1 0 6 1 0 6 1 0 6 1 0 359 1 4 73 0 156 296 2 1 27 5 494 238 0 2 388 6 0 9 chain 8056 chr4 191154276 + 58091364 58091512 L1PB3 3668 - 957 1105 170718 44 1 0 30 28 29 45 chain 25412 chr4 191154276 + 58091512 58091779 AluYb8 318 + 40 307 102625 267 chain 6186 chr4 191154276 + 58093772 58093857 L1PB3 3668 - 2781 2866 183688 9 2 0 4 0 1 28 0 1 42 chain 3011 chr4 191154276 + 58101036 58101068 MIR 256 + 113 145 224785 32 chain 127232 chr4 191154276 + 58112425 58114711 L1PB1 5432 + 3489 5387 28760 11 10 7 214 6 0 15 2 1 145 0 1 48 4 1 6 0 3 21 0 2 158 42 9 81 5 0 263 0 4 25 6 7 26 0 6 84 277 17 173 6 18 41 65 11 216 1 2 9 25 0 23 9 7 12 2 0 3 2 0 9 2 0 48 6 5 16 1 0 44 1 0 13 26 15 17 3 1 5 1 0 16 2 0 22 1 0 17 chain 198501 chr4 191154276 + 58124746 58127435 L1PA13 3608 - 120 2815 19318 20 1 0 20 2 0 5 2 0 47 2 0 8 1 0 31 6 7 14 1 0 62 2 0 114 1 0 32 1 0 6 3 1 6 0 18 462 10 11 52 3 4 112 8 22 12 30 10 418 0 1 79 2 1 401 0 4 448 8 7 239 0 3 18 chain 21675 chr4 191154276 + 58127689 58127926 L1PA4 6152 + 5669 5906 121487 237 chain 20963 chr4 191154276 + 58142201 58142545 THE1B 368 - 0 368 124057 109 51 61 26 1 0 102 12 26 25 0 1 18 chain 28223 chr4 191154276 + 58148030 58148327 AluYb8 318 + 21 318 92220 297 chain 525407 chr4 191154276 + 58161579 58169697 L1PA5 6144 - 0 6144 4642 11 3 1 69 0 1 31 1 0 495 9 5 144 0 20 80 1 0 1355 0 1 360 0 4 1080 1674 0 305 309 0 400 6 9 302 9 0 34 1 0 807 0 1 96 4 0 240 3 4 289 chain 5487 chr4 191154276 + 58165805 58165909 LTR12C 1709 - 814 880 175576 53 37 0 5 1 0 8 chain 16480 chr4 191154276 + 58165909 58166248 LTR12C 1709 - 514 937 136982 36 110 76 81 1 120 45 1 0 65 chain 23247 chr4 191154276 + 58193980 58194267 AluSp 311 + 0 286 114455 10 2 1 275 chain 36630 chr4 191154276 + 58209582 58210022 L1PA7 6471 + 6027 6468 74056 430 0 1 10 chain 40888 chr4 191154276 + 58226506 58227014 MER9a3 513 + 0 513 68042 18 0 2 157 0 1 256 3 4 53 6 7 15 chain 33504 chr4 191154276 + 58245566 58246144 L1PB2 3958 + 3281 3834 78404 28 10 8 46 1 0 10 1 0 4 8 4 58 3 1 11 4 0 40 1 2 52 1 0 9 7 4 59 1 0 64 1 0 43 4 0 10 15 17 6 4 0 77 chain 528812 chr4 191154276 + 58249997 58256136 L1PA4 6152 + 7 6151 4326 123 14 0 12 35 49 115 17 18 256 1 0 128 12 5 681 0 11 2447 0 1 2298 chain 21448 chr4 191154276 + 58267646 58267916 AluSc 308 + 27 298 122340 109 2 3 159 chain 4852 chr4 191154276 + 58305804 58306077 L1ME1 1623 + 664 917 196755 24 189 170 35 1 0 24 chain 14890 chr4 191154276 + 58315417 58315634 L1MA3 4352 - 20 227 141661 4 1 0 14 1 0 26 1 0 6 1 0 24 2 0 23 4 0 110 chain 54802 chr4 191154276 + 58323028 58323753 L1PA10 4194 + 3432 4150 55841 337 6 1 108 1 0 5 0 1 160 2 1 4 0 1 26 0 1 40 3 0 33 chain 314044 chr4 191154276 + 58333574 58337387 L1PA7 6471 - 3 4761 12851 54 2 1 276 1 0 435 0 2 78 2 1 77 0 1 145 0 1 185 0 1 274 3 4 264 0 4 729 0 1 520 0 924 406 10 23 352 chain 32777 chr4 191154276 + 58337417 58337795 L1PA5 6144 - 5 383 79569 378 chain 27516 chr4 191154276 + 58343357 58343710 THE1B 368 - 0 368 94615 169 0 1 22 1 0 111 0 9 6 0 6 44 chain 16710 chr4 191154276 + 58343730 58344017 THE1C 375 - 57 349 136378 22 0 2 155 9 22 20 0 1 4 42 31 35 chain 6690 chr4 191154276 + 58358431 58358514 U13_ 108 - 0 83 179759 83 chain 228649 chr4 191154276 + 58384622 58387232 L1PA5 6144 + 3525 6143 17380 511 0 1 179 0 1 410 0 1 241 0 1 11 1 0 145 0 1 264 0 4 263 0 1 472 1 0 112 chain 19161 chr4 191154276 + 58388990 58389359 THE1B 368 + 0 368 129645 44 78 79 49 21 22 5 2 0 94 1 0 75 chain 530963 chr4 191154276 + 58398030 58404151 L1PA4 6152 - 9 6146 4085 12 1 0 829 0 4 2513 0 1 940 0 1 622 0 3 6 0 1 154 1 3 318 0 3 20 0 1 637 14 15 54 chain 3911 chr4 191154276 + 58410838 58410884 L1PA4 6152 + 6095 6141 208686 46 chain 5527 chr4 191154276 + 58412945 58413010 L1PA4 6152 + 6087 6152 189770 65 chain 251083 chr4 191154276 + 58421917 58424735 L1PA4 6152 - 16 2831 16171 139 7 0 352 5 1 37 0 1 120 0 1 179 0 5 1448 0 1 531 chain 121739 chr4 191154276 + 58425459 58428423 L1PA6 6164 - 7 2968 6615 138 0 1 751 0 1 222 0 1 390 5 4 23 8 0 911 0 1 281 0 2 235 chain 563990 chr4 191154276 + 58428482 58434513 L1HS 6032 - 0 6032 238 853 0 1 5178 chain 131473 chr4 191154276 + 58434525 58437726 L1PA6 6164 - 2968 6164 6615 861 2 1 223 0 1 152 1 0 877 1 2 60 1 0 452 1 0 48 0 2 104 4 0 162 2 1 50 1 0 4 1 2 194 chain 16192 chr4 191154276 + 58448439 58448620 L1PA2 6032 - 1 182 137775 181 chain 507925 chr4 191154276 + 58485508 58491443 L1PA5 6144 - 9 6141 6329 139 3 0 110 0 1 1881 0 1 84 0 1 158 0 6 693 1 0 461 0 1 431 7 1 277 1 2 188 0 1 119 7 10 155 4 9 168 4 3 271 1 188 183 0 1 589 chain 15126 chr4 191154276 + 58492184 58492401 L1PA16 3655 + 2723 2945 140981 151 24 30 4 1 0 37 chain 170909 chr4 191154276 + 58509747 58511600 L1PA2 6032 - 0 1854 21956 1626 0 1 227 chain 55375 chr4 191154276 + 58511600 58512213 L1PA2 6032 + 3534 4167 55172 121 0 1 22 0 18 81 0 1 389 chain 122758 chr4 191154276 + 58529445 58530810 L1PA4 6152 - 1 1367 30132 318 0 1 1047 chain 341522 chr4 191154276 + 58580290 58585519 L1P2 5180 + 5 4224 11852 141 13 7 8 0 5 28 1 0 53 1 0 158 1 0 102 1 0 8 1 0 48 1 0 220 0 15 156 0 1 293 0 1 327 0 3 457 0 2 283 15 0 270 0 1 337 0 10 151 339 0 125 0 2 5 2 0 23 696 5 58 0 1 190 0 4 194 0 2 85 0 1 159 0 1 279 chain 118297 chr4 191154276 + 58594944 58596508 LTR12C 1709 - 0 1709 31689 82 1 0 69 1 0 254 0 4 38 0 2 32 20 11 84 0 47 33 0 41 57 50 0 107 0 118 216 0 1 48 0 1 168 10 1 28 1 2 265 chain 4194 chr4 191154276 + 58595615 58595665 LTR12C 1709 - 547 595 134622 44 2 0 4 chain 285818 chr4 191154276 + 58610341 58614301 L1PA10 4194 - 33 3971 14296 10 2 1 34 3 0 23 0 2 9 1 0 180 10 13 512 1 0 419 2 0 171 8 7 93 0 12 12 2 0 27 1 8 16 3 2 97 2 3 47 1 2 306 1 0 12 0 3 640 0 3 149 5 6 172 8 9 280 0 1 113 5 7 242 34 30 78 153 118 6 1 0 15 2 0 21 1 0 8 1 2 9 4 0 8 chain 125094 chr4 191154276 + 58620569 58622001 L1PA4 6152 + 4718 6143 29362 737 11 8 21 10 0 474 0 6 179 chain 132063 chr4 191154276 + 58622230 58623904 L1PA7 6471 + 4774 6466 27621 23 3 17 284 0 1 79 0 1 21 3 4 216 0 8 193 0 3 63 17 16 515 7 1 94 5 7 36 0 1 89 14 8 12 chain 177924 chr4 191154276 + 58633015 58635018 L1PA3long 6157 - 5 2019 21170 291 0 1 587 5 14 257 0 1 863 chain 225246 chr4 191154276 + 58635019 58637583 L1HS 6032 + 1098 3661 17576 2463 1 0 100 chain 23769 chr4 191154276 + 58637604 58637869 L1PA4 6152 - 1 266 111655 265 chain 56944 chr4 191154276 + 58656404 58657025 L1PA3long 6157 - 5 626 54565 621 chain 62743 chr4 191154276 + 58657025 58657740 L1P1 4361 + 2943 3660 51564 221 0 1 6 0 1 488 chain 94673 chr4 191154276 + 58676976 58678100 L1PA5 6144 - 9 1129 38173 28 2 4 298 0 8 320 10 0 21 7 4 158 1 0 279 chain 54375 chr4 191154276 + 58719472 58720108 L1PA3long 6157 - 0 614 56112 332 0 1 129 34 11 141 chain 5345 chr4 191154276 + 58742040 58742145 MER82 654 + 19 126 191594 28 0 15 11 26 13 40 chain 71910 chr4 191154276 + 58751718 58752534 L1PA5 6144 - 1 814 47472 8 7 0 301 0 1 444 0 3 56 chain 143019 chr4 191154276 + 58752534 58754229 L1P2 5180 + 1396 3182 25650 13 5 0 8 0 5 24 1 0 880 1 91 706 0 2 57 chain 24843 chr4 191154276 + 58759666 58760037 THE1D 372 - 0 371 105663 32 1 0 142 32 36 18 1 0 21 1 0 73 1 0 49 chain 510536 chr4 191154276 + 58760905 58785831 L1PA3long 6157 - 1 6151 6117 1802 0 4 1087 2 1 1036 0 1 395 17 0 234 18759 0 347 2 0 140 5 3 1100 chain 24714 chr4 191154276 + 58765778 58767044 L1PA3long 6157 + 5 1271 7714 370 7 3 460 6 7 344 0 3 79 chain 11778 chr4 191154276 + 58771357 58771597 L1PB4 2604 - 123 363 153142 58 23 24 18 4 0 60 7 8 24 21 23 25 chain 34796 chr4 191154276 + 58780881 58781292 L1PA5 6144 + 5727 6138 76485 78 0 1 225 1 0 107 chain 88920 chr4 191154276 + 58785837 58790392 L1PA3long 6157 + 1592 6146 7714 38 0 2 2152 0 1 688 5 1 88 2 0 151 0 2 1431 chain 21857 chr4 191154276 + 58802188 58802501 THE1B 368 + 1 328 120792 41 0 6 6 4 13 36 1 2 67 7 6 116 1 0 34 chain 120539 chr4 191154276 + 58802541 58804118 THE1B-int 1605 + 0 1605 30863 356 15 11 59 0 25 119 5 10 215 16 23 8 7 0 673 0 1 99 0 1 5 chain 25777 chr4 191154276 + 58804118 58804473 THE1B 368 + 0 368 100977 44 8 23 101 1 0 125 1 0 75 chain 21835 chr4 191154276 + 58812394 58812639 L1PA5 6144 + 5900 6144 120873 66 0 1 168 2 0 9 chain 33729 chr4 191154276 + 58813998 58814409 L1PA7 6471 + 6061 6466 78045 69 7 1 335 chain 197461 chr4 191154276 + 58828060 58830289 L1PA4 6152 + 3918 6151 19393 401 1 0 337 1 2 7 1 0 617 0 4 531 1 2 332 chain 120192 chr4 191154276 + 58831409 58832825 LTR12C 1709 + 1 1698 30987 649 0 278 184 1 0 6 2 0 106 0 4 144 0 2 324 chain 1117 chr4 191154276 + 58834126 58834331 LTR12C 1709 + 714 877 155555 24 41 0 11 2 17 7 15 0 64 1 0 40 chain 50237 chr4 191154276 + 58856800 58857364 L1PA5 6144 - 3 568 58843 404 0 1 160 chain 22048 chr4 191154276 + 58861340 58861621 AluY 311 + 0 289 120028 62 0 3 60 14 19 145 chain 306258 chr4 191154276 + 58873436 58877039 L1PA6 6164 - 5 3621 13163 844 1 0 123 1 2 305 2 0 56 5 0 6 1 8 443 0 6 308 0 1 68 0 5 794 0 1 646 chain 54372 chr4 191154276 + 58877039 58877697 L1PA6 6164 + 1881 2532 56008 303 2 1 118 4 7 17 9 0 205 chain 95027 chr4 191154276 + 58887278 58888301 L1HS 6032 + 5009 6032 38085 1023 chain 273780 chr4 191154276 + 58889447 58892461 L1PA3long 6157 - 0 3018 14985 12 0 3 2734 0 1 268 chain 180425 chr4 191154276 + 58892461 58894496 L1HS 6032 + 985 3019 20942 1043 10 1 9 0 9 522 1 0 450 chain 31667 chr4 191154276 + 58921768 58922174 THE1B-int 1605 - 1181 1604 81380 80 3 22 176 2 0 145 chain 30104 chr4 191154276 + 58925544 58925963 MLT2A1 477 + 0 477 84472 142 8 9 18 0 4 35 5 4 45 0 1 117 5 59 24 1 0 19 chain 45338 chr4 191154276 + 58990743 58991519 LTR12_ 688 - 0 688 62672 51 0 1 19 133 0 31 16 46 233 1 0 4 42 57 246 chain 498329 chr4 191154276 + 59015430 59021887 L1PA7 6471 + 0 6461 6936 230 62 73 158 4 5 93 3 4 51 2 1 129 0 12 25 2 1 384 0 11 65 0 5 109 1 0 435 0 1 97 4 7 148 0 4 288 6 5 38 1 0 252 0 1 465 1 5 50 0 2 348 0 1 46 0 4 53 1 0 432 9 10 4 1 0 98 0 1 217 2 1 296 6 10 805 9 7 85 49 0 47 5 2 18 0 1 528 1 0 49 1 0 244 chain 11091 chr4 191154276 + 59044104 59044287 MSTA 426 + 0 199 155834 99 40 56 44 chain 75455 chr4 191154276 + 59051364 59052383 MER11A 1151 - 0 1151 45792 60 7 6 90 0 1 91 9 41 364 18 6 187 0 11 63 3 96 48 0 8 79 chain 56893 chr4 191154276 + 59059335 59061079 L1PB1 5432 + 4448 5427 54601 35 41 31 112 68 0 30 2 12 136 10 2 6 0 4 287 701 35 8 1 0 12 8 4 8 2 0 7 0 2 38 6 5 14 1 0 45 1 0 15 1 0 4 42 31 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 23682 chr4 191154276 + 59086330 59086683 L1MA3 4352 + 546 924 112140 132 1 14 71 0 10 59 8 13 13 0 1 9 10 6 50 chain 164739 chr4 191154276 + 59095427 59097221 L1PA2 6032 - 0 1794 22690 1794 chain 58895 chr4 191154276 + 59109483 59110183 L1PA6 6164 + 5467 6162 53463 287 5 0 93 0 1 299 1 0 15 chain 10743 chr4 191154276 + 59112688 59112802 L1PA4 6152 + 6037 6151 157227 114 chain 38455 chr4 191154276 + 59125045 59125501 L1PA7 6471 - 7 461 71509 354 2 0 100 chain 161734 chr4 191154276 + 59159185 59161705 HERVH-int 3825 - 0 2727 23099 181 0 1 6 422 646 189 11 0 679 9 13 16 0 5 575 0 23 61 9 0 201 30 0 131 chain 14382 chr4 191154276 + 59170605 59170786 LTR12C 1709 - 0 180 142755 84 5 4 92 chain 18859 chr4 191154276 + 59170786 59171018 LTR12C 1709 + 1478 1709 130491 149 1 0 82 chain 399573 chr4 191154276 + 59171098 59175918 HERV9-int 5642 + 0 4824 10111 391 0 1 18 1 5 345 0 4 3 4 0 28 1 0 116 16 12 182 13 9 105 0 1 24 0 1 785 1 2 60 0 3 103 1 0 1816 1 0 4 1 2 80 0 1 613 0 2 19 0 1 6 1 0 82 chain 29401 chr4 191154276 + 59194197 59194507 AluYg6 310 + 0 310 87070 310 chain 42265 chr4 191154276 + 59198963 59199522 L1P2 5180 + 1873 2398 66312 202 1 0 150 3 0 94 30 0 79 chain 497853 chr4 191154276 + 59199529 59205636 L1PA5 6144 + 0 6139 6963 121 0 14 24 7 19 602 0 1 30 0 17 11 28 11 219 7 10 90 9 0 245 0 6 121 0 1 651 0 2 61 7 6 5 0 1 178 3 1 235 0 3 221 0 1 251 0 1 134 14 14 624 0 1 544 0 1 151 1 0 203 9 0 181 0 1 395 1 0 397 0 1 120 0 6 207 chain 156379 chr4 191154276 + 59205636 59207598 L1P1 4361 + 2373 4341 23768 6 1 0 148 0 3 690 0 1 342 1 9 46 0 1 59 7 0 284 0 1 150 0 1 30 5 4 28 0 1 120 0 1 7 1 0 23 2 1 12 chain 19349 chr4 191154276 + 59209987 59210339 THE1D 372 + 19 372 129075 16 12 0 19 15 30 82 43 45 4 0 1 7 4 0 117 1 0 32 chain 36039 chr4 191154276 + 59230580 59231083 MER41A 554 - 0 554 74851 81 0 5 153 7 8 15 3 33 43 17 32 184 chain 6164 chr4 191154276 + 59237924 59238010 L1PA17 2846 - 211 296 183844 35 4 3 47 chain 100709 chr4 191154276 + 59239449 59240571 L1PA3long 6157 - 0 1180 36452 178 0 2 662 0 1 63 0 55 219 chain 110770 chr4 191154276 + 59240571 59241828 L1P1 4361 + 2793 4064 34011 462 1 0 39 0 14 443 0 1 312 chain 146557 chr4 191154276 + 59254735 59256378 L1PA3long 6157 - 0 1637 25081 160 7 0 666 0 1 810 chain 358941 chr4 191154276 + 59263834 59268082 L1PA4 6152 - 1994 6146 11378 534 0 2 986 91 0 2060 1 0 114 12 6 450 chain 166673 chr4 191154276 + 59268093 59269986 L1PA4 6152 + 4254 6146 22437 767 1 0 1125 chain 89169 chr4 191154276 + 59270891 59271931 L1PA5 6144 + 4336 5376 39941 155 1 0 372 2 1 5 0 1 350 1 2 154 chain 24104 chr4 191154276 + 59271933 59272220 L1PA5 6144 + 5377 5665 109725 94 5 6 188 chain 39582 chr4 191154276 + 59272222 59272699 L1PA5 6144 + 5665 6144 69918 145 0 1 202 0 1 130 chain 18110 chr4 191154276 + 59288852 59289146 THE1B 368 - 35 368 132568 14 11 19 108 23 20 53 4 23 41 0 15 40 chain 11225 chr4 191154276 + 59303755 59303913 L1PA16 3655 - 67 221 155329 10 3 0 9 1 0 135 chain 71052 chr4 191154276 + 59306303 59307311 MER11A 1151 - 17 1151 47907 126 26 27 44 1 2 14 0 1 58 8 41 12 0 1 118 16 17 135 0 1 93 19 20 130 4 0 64 1 0 52 8 0 24 0 99 55 chain 27489 chr4 191154276 + 59314690 59315000 AluYk4 311 - 2 311 94690 183 1 0 126 chain 9253 chr4 191154276 + 59324001 59324142 LTR12C 1709 + 654 872 164298 89 17 94 35 chain 397944 chr4 191154276 + 59324832 59329658 HERV9-int 5642 + 0 4825 10171 371 0 5 210 0 1 10 20 14 184 1 0 312 3 4 6 5 0 31 0 1 6 1 0 425 0 2 5 7 1 100 3 5 1281 1 0 236 1 5 35 0 3 1572 chain 12946 chr4 191154276 + 59355253 59355456 MER57-int 2662 - 162 379 148447 6 2 0 36 0 4 12 13 27 83 2 0 49 chain 65537 chr4 191154276 + 59359204 59359992 LTR17 781 - 0 781 50321 445 0 2 6 0 1 29 10 0 298 chain 36713 chr4 191154276 + 59370271 59370776 L1PA8 5853 + 5362 5853 73937 200 1 0 46 2 0 59 1 2 9 2 1 10 9 8 47 1 0 16 1 0 86 8 0 7 chain 3219 chr4 191154276 + 59380406 59380474 MER5A1 166 - 1 70 220604 12 19 20 37 chain 5619 chr4 191154276 + 59403409 59403700 MLT1C 463 - 72 374 188870 26 0 7 15 44 49 24 147 146 35 chain 143423 chr4 191154276 + 59442450 59443989 L1HS 6032 - 0 1546 25572 1339 0 7 200 chain 37833 chr4 191154276 + 59443989 59444389 L1HS 6032 + 4089 4489 72091 400 chain 470300 chr4 191154276 + 59445796 59451909 L1PA7 6471 - 6 6466 8024 77 0 1 278 0 6 401 0 2 71 0 3 87 0 1 4 1 0 36 17 1 152 1 0 4 0 1 46 0 5 23 1 0 4 0 1 131 5 0 77 6 23 45 0 1 308 0 2 667 1 0 282 0 1 142 0 7 22 0 4 397 0 1 329 10 6 43 4 0 40 0 1 84 16 6 246 0 1 43 0 4 87 0 2 255 0 6 656 0 1 7 14 15 21 0 40 259 15 14 157 6 119 199 23 193 55 67 66 191 chain 11871 chr4 191154276 + 59455922 59456081 L1PA8 5853 - 0 157 152737 92 2 1 19 2 1 44 chain 26451 chr4 191154276 + 59460219 59460611 L1PA8 5853 + 5469 5853 98232 41 5 6 48 1 0 44 2 0 71 1 0 14 19 16 31 2 1 19 1 0 93 chain 84047 chr4 191154276 + 59485730 59486767 MER11C 1089 + 0 1061 41886 76 2 1 148 0 5 131 0 5 49 20 19 558 0 1 37 0 15 16 chain 5833 chr4 191154276 + 59500839 59501227 L1MD2 1676 - 22 370 186835 20 293 254 57 1 0 17 chain 3437 chr4 191154276 + 59530086 59530126 LTR49 580 - 370 410 216449 40 chain 40847 chr4 191154276 + 59557119 59557593 L1PA4 6152 + 5646 6146 68101 182 4 30 288 chain 15496 chr4 191154276 + 59561134 59561431 THE1B 368 + 0 311 139913 108 19 27 19 0 2 20 0 2 6 55 59 61 2 0 7 chain 12104 chr4 191154276 + 59561443 59561602 L1PA7 6471 - 4 163 151781 145 0 1 4 1 0 9 chain 13001 chr4 191154276 + 59570413 59570584 THE1B 368 + 194 368 148249 5 0 1 10 0 4 16 1 0 12 1 0 126 chain 137774 chr4 191154276 + 59573687 59575239 L1PA5 6144 - 12 1569 26520 613 0 1 305 0 1 58 0 1 108 0 1 238 0 1 230 chain 84956 chr4 191154276 + 59609147 59610196 MER11C 1089 - 30 1089 41533 321 0 1 38 1 0 5 0 4 124 19 20 225 0 4 65 0 1 251 chain 30889 chr4 191154276 + 59615784 59616448 L1P2 5180 + 1701 2455 82703 124 14 6 18 240 338 268 chain 27175 chr4 191154276 + 59642123 59642486 THE1C 375 - 15 375 95679 11 1 0 227 3 0 98 2 3 21 chain 86456 chr4 191154276 + 59643877 59644821 L1PA2 6032 - 0 944 40985 944 chain 44172 chr4 191154276 + 59644821 59645294 L1HS 6032 + 548 1021 63979 473 chain 5135 chr4 191154276 + 59655811 59655890 MADE1 96 - 0 96 193735 27 1 2 13 1 17 37 chain 75082 chr4 191154276 + 59683970 59684842 MER11D 897 + 0 897 45977 574 0 23 33 0 1 71 0 1 194 chain 88009 chr4 191154276 + 59695683 59696765 MER11B 1079 - 5 1079 40367 19 5 6 277 6 0 177 1 0 89 0 1 246 10 7 252 chain 110418 chr4 191154276 + 59716106 59717369 L1PA4 6152 - 2475 3739 34054 427 0 1 46 6 5 20 0 1 764 chain 216509 chr4 191154276 + 59717369 59720219 L1PA4 6152 + 3665 6152 18084 1340 0 1 1000 376 12 134 chain 174405 chr4 191154276 + 59721415 59724047 L1PA7 6471 - 3 2262 21551 131 13 7 64 0 2 46 1 0 4 0 1 6 3 5 583 2 0 76 379 0 174 1 2 69 0 1 100 11 16 204 11 0 16 0 5 185 0 1 79 0 5 11 0 4 123 1 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53 0 1 127 chain 10727 chr4 191154276 + 59905383 59905525 MLT1B 390 + 244 387 157292 15 0 2 39 1 0 87 chain 565978 chr4 191154276 + 59944565 59950595 L1HS 6032 + 3 6032 157 713 1 0 5316 chain 351752 chr4 191154276 + 59974323 59979811 L1PA6 6164 - 3 4332 11553 7 3 0 608 7 9 545 1 0 7 4 3 136 0 14 875 0 5 224 1181 2 206 0 1 31 1 3 294 9 9 4 0 1 27 0 1 48 0 9 500 8 12 245 21 1 250 7 13 239 chain 81057 chr4 191154276 + 59976748 59977903 MER11A 1151 + 0 1133 43159 79 31 41 108 1 0 61 8 5 56 36 0 38 0 1 54 0 1 66 0 1 49 3 2 277 13 20 226 6 5 43 chain 5034 chr4 191154276 + 59988731 59988790 PRIMA4_LTR 623 - 12 71 194790 59 chain 43199 chr4 191154276 + 60034308 60034842 L1P1 4361 - 20 553 65173 12 2 1 23 1 0 155 1 0 121 0 1 147 1 2 71 chain 36217 chr4 191154276 + 60037455 60037954 MER9a3 513 + 0 513 74606 18 0 2 91 0 1 67 12 13 64 1 0 38 1 11 129 5 6 73 chain 12039 chr4 191154276 + 60049762 60049892 L1PA3long 6157 - 3716 3846 152035 130 chain 332767 chr4 191154276 + 60049896 60053605 L1PA3long 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191154276 + 60640406 60640708 AluSq10 312 + 8 310 101362 302 chain 300161 chr4 191154276 + 60647389 60651170 L1PA7 6471 + 2677 6470 13417 148 1 0 4 0 1 69 0 4 145 4 0 48 0 4 433 7 8 558 11 12 45 0 7 305 4 8 154 0 1 34 6 7 271 7 6 664 2 0 8 4 0 684 8 0 8 0 8 149 chain 7149 chr4 191154276 + 60698893 60698992 HY3 101 + 1 100 176407 75 3 0 5 0 3 16 chain 65194 chr4 191154276 + 60705062 60705856 L1PA7 6471 - 6 813 50476 7 0 1 399 8 9 85 0 11 295 chain 32431 chr4 191154276 + 60706216 60706563 L1PA2 6032 - 8 355 80150 347 chain 390160 chr4 191154276 + 60709091 60713671 L1PA5 6144 + 1556 6130 10451 383 1 0 99 0 6 265 7 0 4 0 1 221 0 1 748 0 1 482 1 0 4 0 1 106 0 1 198 0 1 466 1 0 84 1 0 84 0 1 4 7 5 34 0 1 112 1 0 423 1 2 528 15 9 83 1 0 216 chain 33910 chr4 191154276 + 60742929 60743306 L1PA4 6152 - 4 381 77755 377 chain 22832 chr4 191154276 + 60743473 60743748 AluY 311 + 8 299 116432 39 0 16 236 chain 43665 chr4 191154276 + 60744945 60745430 L1PA3long 6157 + 5672 6157 64611 485 chain 15545 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191154276 + 62001971 62002212 L1PA4 6152 + 5909 6150 120821 241 chain 61011 chr4 191154276 + 62072788 62073512 L1PA7 6471 - 19 745 52327 26 1 2 105 1 2 591 chain 25943 chr4 191154276 + 62099874 62100208 THE1A 353 - 20 353 100237 222 1 0 111 chain 539115 chr4 191154276 + 62232957 62238966 L1PA3long 6157 - 0 6155 2966 859 0 1 188 1 11 150 1 0 1277 0 1 2291 0 1 474 8 136 23 6 7 373 0 1 211 5 6 83 0 3 59 chain 24875 chr4 191154276 + 62286746 62287079 AluY 311 + 0 300 105484 52 25 1 79 0 1 156 10 0 11 chain 22093 chr4 191154276 + 62305209 62305486 L1PA7 6471 - 35 313 119825 54 0 1 63 1 0 9 0 1 150 chain 8024 chr4 191154276 + 62326291 62326428 THE1B 368 - 0 135 170915 49 29 28 51 1 0 7 chain 2893 chr4 191154276 + 62329802 62329833 MER58A 224 - 149 180 227162 31 chain 3526 chr4 191154276 + 62413705 62413744 L1PA15 4387 - 454 493 214941 39 chain 41003 chr4 191154276 + 62421308 62421838 MER41A 554 - 0 554 67898 37 0 2 14 11 32 418 2 3 48 chain 21941 chr4 191154276 + 62464673 62465063 MER39B 650 - 2 393 120459 50 66 66 102 9 10 19 4 0 48 4 8 88 chain 3235 chr4 191154276 + 62468118 62468157 MER20 218 + 43 82 220323 39 chain 537337 chr4 191154276 + 62507016 62513020 L1PA3long 6157 - 1 6157 3268 32 0 9 3163 0 4 257 0 1 273 0 1 108 3 2 927 0 1 427 0 8 39 4 132 433 0 1 338 chain 3393 chr4 191154276 + 62518961 62519097 MLT1A 405 + 251 389 217230 35 84 86 17 chain 22443 chr4 191154276 + 62549250 62549540 LTR27 711 - 408 703 118281 150 14 19 126 chain 39636 chr4 191154276 + 62586856 62587390 MLT2A2 560 - 12 560 69845 69 0 2 64 0 11 74 0 1 82 1 4 5 3 0 38 1 4 25 3 0 169 chain 32287 chr4 191154276 + 62603679 62604249 L1PB1 5432 - 20 565 80384 8 1 0 13 1 0 21 1 0 23 24 20 19 23 12 15 1 0 20 1 0 25 1 4 11 4 8 44 3 1 6 4 0 15 1 0 13 12 11 9 3 0 6 6 5 236 chain 547993 chr4 191154276 + 62609445 62615587 L1PA3long 6157 + 4 6157 1709 1459 0 6 781 8 10 124 0 1 1278 0 1 971 1 0 671 0 1 439 0 1 410 chain 28094 chr4 191154276 + 62616227 62616530 AluYa5 310 + 0 304 92668 130 1 2 172 chain 525349 chr4 191154276 + 62620387 62626523 L1PA4 6152 - 49 6152 4647 364 0 1 1078 0 1 1373 1 0 33 0 2 86 1 0 531 80 15 23 0 7 46 1 0 159 0 1 709 0 8 316 0 1 612 0 10 41 0 3 471 0 1 211 chain 44190 chr4 191154276 + 62629935 62630417 LTR7 482 - 0 482 63956 482 chain 290874 chr4 191154276 + 62631706 62635258 HERVH-int 3825 - 0 3825 13968 241 6 5 130 7 1 9 7 13 88 8 218 861 0 2 232 0 10 299 8 35 769 12 12 118 0 3 13 0 2 7 0 1 30 1 0 6 9 10 11 2 1 42 1 0 25 3 0 7 6 5 15 29 0 24 1 0 10 1 0 25 0 56 489 chain 41971 chr4 191154276 + 62635260 62635743 LTR7 482 - 0 482 66656 59 6 3 34 1 3 383 chain 6485 chr4 191154276 + 62653734 62653815 L1P5 443 - 6 87 181357 81 chain 32220 chr4 191154276 + 62654025 62654457 L1PBa 3878 + 292 723 80487 232 1 0 5 0 1 4 1 0 39 1 0 60 5 6 84 chain 9924 chr4 191154276 + 62656153 62656291 MER44A 345 - 93 234 160966 19 0 4 68 1 0 50 chain 29379 chr4 191154276 + 62656405 62656776 THE1B 368 - 0 368 87174 176 2 0 23 1 0 169 chain 104341 chr4 191154276 + 62656787 62658179 THE1B-int 1605 - 11 1475 35659 6 0 1 187 0 1 89 2 1 173 5 4 114 11 27 80 0 3 162 17 33 143 0 4 80 2 7 22 0 25 237 0 3 62 chain 7158 chr4 191154276 + 62658660 62658776 THE1B 368 - 20 131 176357 37 1 0 4 17 13 57 chain 13956 chr4 191154276 + 62658813 62659321 THE1B 368 - 170 368 144728 29 1 0 8 310 0 51 6 7 103 chain 14252 chr4 191154276 + 62692486 62692645 L1PA5 6144 + 5985 6144 143709 159 chain 46828 chr4 191154276 + 62699693 62700248 L1PA4 6152 - 9 570 61355 104 6 17 25 7 0 212 0 2 201 chain 3093 chr4 191154276 + 62702983 62703016 MER34A 573 - 60 93 223056 33 chain 3074 chr4 191154276 + 62718882 62718914 MER21B 843 - 673 705 223482 32 chain 29228 chr4 191154276 + 62728946 62729254 AluYa5 310 - 2 310 87918 308 chain 23436 chr4 191154276 + 62735358 62735679 AluSp 311 + 4 307 113439 16 25 5 250 5 7 25 chain 4561 chr4 191154276 + 62739545 62739603 MER20 218 + 90 148 200098 58 chain 30296 chr4 191154276 + 62740507 62740825 AluYb8 318 - 0 318 83931 318 chain 13523 chr4 191154276 + 62742473 62742627 MER41A 554 + 313 468 146272 87 0 1 67 chain 7552 chr4 191154276 + 62791721 62791847 Tigger3c 601 - 116 255 173854 29 18 17 55 0 4 6 0 10 18 chain 567405 chr4 191154276 + 62805645 62811680 L1HS 6032 - 0 6032 62 6 2 0 3464 1 0 2562 chain 139056 chr4 191154276 + 62821314 62823083 L1PA8A 6298 - 8 1787 26287 15 0 9 82 6 5 498 3 1 160 0 3 27 2 1 75 0 2 6 6 4 447 0 1 344 0 1 98 chain 150473 chr4 191154276 + 62836878 62838537 L1PA3long 6157 - 1 1661 24541 624 0 1 1035 chain 3283 chr4 191154276 + 62893059 62893163 MER3 215 + 9 133 219298 31 53 73 20 chain 520523 chr4 191154276 + 62954072 62960518 L1PA7 6471 - 19 6471 5103 458 0 3 317 2 1 57 0 2 665 1 0 123 2 6 146 0 8 140 0 10 143 5 6 462 1 14 57 4 0 474 28 0 253 1 7 258 2 0 395 12 5 154 2 0 162 0 1 372 1 0 310 1 2 465 9 5 147 0 1 333 1 0 48 3 8 30 0 1 169 14 15 219 chain 29790 chr4 191154276 + 62967268 62967622 THE1A 353 + 0 353 85499 107 4 3 243 chain 34202 chr4 191154276 + 62972423 62972888 L1PA13 3608 - 658 1122 77344 270 9 8 148 0 3 5 5 2 28 chain 5757 chr4 191154276 + 62977857 62977934 MER41B 635 - 77 154 187580 22 0 1 4 1 0 50 chain 35761 chr4 191154276 + 62988727 62989191 L1PA7 6471 - 4 469 75187 8 2 0 48 1 0 139 1 5 265 chain 27203 chr4 191154276 + 62993126 62993483 THE1B 368 + 0 368 95582 44 0 15 139 4 0 87 0 1 8 1 0 74 chain 4008 chr4 191154276 + 63005003 63005050 THE1D 372 - 318 365 207271 47 chain 356311 chr4 191154276 + 63016432 63021424 L1PB1 5432 + 546 5420 11447 6 0 2 91 0 1 56 0 2 333 0 1 31 3 5 192 0 1 137 15 0 140 0 4 63 29 25 333 50 54 229 2 0 5 0 3 114 0 4 113 1 0 133 12 7 194 1 0 641 1 3 110 1 0 6 0 1 16 2 1 99 36 0 25 26 10 225 1 4 576 0 2 6 2 0 65 12 6 184 2 10 64 0 1 170 6 7 46 51 11 24 1 0 8 1 0 12 15 9 52 1 0 18 1 0 27 17 16 16 3 0 6 14 6 19 9 6 12 3 1 24 1 0 21 1 0 13 1 0 16 chain 298315 chr4 191154276 + 63027677 63032319 HERVL-int 5654 + 0 5654 13514 144 0 2 30 3 0 164 1 4 16 5 1 58 0 2 411 6 1 37 11 16 127 8 9 183 3 0 173 32 29 364 9 15 134 0 1 471 0 2 330 752 0 5 0 1 48 0 1742 23 0 4 433 10 11 179 1 0 57 2 0 179 0 1 23 1 0 110 0 15 99 chain 54232 chr4 191154276 + 63030401 63031142 MER4E1 777 + 0 770 56203 25 1 0 95 1 5 64 1 0 52 1 0 9 0 1 80 1 20 191 15 23 205 chain 99606 chr4 191154276 + 63032811 63033958 L1PA4 6152 - 0 1174 36883 8 0 1 115 1 4 32 0 1 334 0 12 142 0 11 510 1 0 4 chain 60330 chr4 191154276 + 63041624 63042440 MER4E1 777 - 8 777 52665 121 2 0 98 59 19 12 8 0 475 0 4 23 1 0 17 chain 133757 chr4 191154276 + 63044295 63045920 L1PA3long 6157 + 4486 6149 27265 231 0 1 24 0 1 490 5 6 39 1 2 193 5 61 103 0 1 138 23 0 122 1 0 146 0 1 104 chain 47261 chr4 191154276 + 63050521 63051103 L1PA7 6471 - 6 584 60992 7 2 0 136 0 7 7 18 10 167 1 0 244 chain 174195 chr4 191154276 + 63105559 63107877 L1PA7 6471 + 4298 6468 21574 107 14 6 260 0 4 935 7 10 78 0 2 233 153 0 203 0 1 123 0 1 47 14 15 68 0 1 76 chain 23989 chr4 191154276 + 63136558 63136874 THE1C-int 1605 + 22 398 110389 88 0 54 165 14 20 49 chain 518121 chr4 191154276 + 63174988 63181094 L1PA4 6152 + 10 6143 5365 369 0 1 179 0 1 556 1 2 330 0 1 4 1 2 858 4 0 1685 9 11 175 0 1 74 0 3 749 0 13 131 0 2 368 0 1 451 11 13 18 0 1 29 0 1 104 chain 11434 chr4 191154276 + 63201077 63201236 L1PB1 5432 + 4303 4468 154549 106 20 26 33 chain 9476 chr4 191154276 + 63201239 63201360 L1PB1 5432 + 4475 4596 163184 121 chain 12367 chr4 191154276 + 63201522 63201680 L1PB1 5432 + 4623 4785 150767 109 0 4 49 chain 14762 chr4 191154276 + 63201680 63201893 L1PB1 5432 + 4786 4987 142060 176 15 3 22 chain 10737 chr4 191154276 + 63201902 63202062 L1PB1 5432 + 4996 5152 157253 107 1 2 9 3 0 26 1 0 6 1 0 6 chain 3500 chr4 191154276 + 63202094 63202136 L1PB1 5432 + 5178 5220 215355 42 chain 4213 chr4 191154276 + 63202154 63202249 L1PB1 5432 + 5236 5318 204387 45 6 5 10 4 1 11 9 0 10 chain 75966 chr4 191154276 + 63203694 63204737 MER11C 1089 - 20 1089 45501 4 0 1 135 23 22 43 0 1 125 0 1 38 1 0 4 1 5 304 1 0 59 8 12 10 6 15 35 4 13 242 chain 9395 chr4 191154276 + 63206051 63206235 L1PB4 2604 + 1741 1925 163585 21 39 40 96 11 10 17 chain 24038 chr4 191154276 + 63220320 63220675 LTR7B 505 - 0 505 110124 25 2 0 5 0 1 20 14 13 89 0 74 27 12 80 56 0 10 105 chain 42958 chr4 191154276 + 63231985 63232528 MLT2A2 560 + 0 560 65464 14 0 4 381 3 14 28 2 4 115 chain 20300 chr4 191154276 + 63266048 63266270 L1PA5 6144 - 13 235 126233 222 chain 19551 chr4 191154276 + 63272615 63272869 THE1B-int 1605 + 1329 1591 128514 103 1 2 59 0 7 91 chain 5302 chr4 191154276 + 63273636 63273706 MLT1E2 623 + 535 607 192005 6 1 0 58 0 3 5 chain 7050 chr4 191154276 + 63291357 63291443 MER51B 395 - 0 86 177114 86 chain 142851 chr4 191154276 + 63292201 63293791 L1PA3long 6157 - 0 1586 25676 5 2 0 442 3 1 1138 chain 30743 chr4 191154276 + 63294115 63294506 MER51B 395 - 0 395 82963 57 0 4 334 chain 61342 chr4 191154276 + 63297576 63298331 LTR12 884 + 0 884 52177 79 0 132 170 2 0 291 1 0 212 chain 66286 chr4 191154276 + 63301402 63302511 L1PA14 3548 - 92 1166 49961 42 1 0 18 1 0 3 1 0 14 19 17 21 5 1 8 1 0 108 2 1 86 9 6 13 14 10 103 2 0 7 6 4 20 52 50 159 1 5 36 14 1 34 1 0 153 2 1 45 5 1 14 0 4 89 chain 80600 chr4 191154276 + 63303637 63304772 THE1A-int 1579 - 18 1579 43343 390 0 1 12 0 1 46 131 554 48 6 7 502 chain 30350 chr4 191154276 + 63313807 63314207 L1PA6 6164 + 5728 6126 83778 179 2 1 108 1 2 4 1 0 31 1 0 73 chain 9171 chr4 191154276 + 63325455 63325627 MER2 342 + 24 199 164695 24 29 34 30 1 0 4 1 0 83 chain 120197 chr4 191154276 + 63356760 63358177 LTR12C 1709 - 0 1708 30984 224 0 1 228 1 2 26 7 11 45 0 285 50 1 0 349 0 1 486 chain 6395 chr4 191154276 + 63379548 63379669 MER34C2 569 - 57 195 182069 46 5 9 10 17 30 43 chain 27814 chr4 191154276 + 63380106 63380549 LTR7B 505 + 0 486 93650 104 1 11 60 0 93 12 59 0 85 1 0 32 1 2 42 14 13 32 chain 59721 chr4 191154276 + 63387771 63388502 LTR17 781 + 0 753 52983 327 1 0 236 2 3 149 0 22 16 chain 62230 chr4 191154276 + 63392252 63393003 LTR17 781 - 0 781 51784 31 0 22 401 1 0 199 0 9 119 chain 46410 chr4 191154276 + 63395865 63396423 L1PA5 6144 + 5540 6142 61675 231 0 48 316 4 0 7 chain 51289 chr4 191154276 + 63417415 63418077 PABL_A 660 + 0 660 58122 25 7 3 117 0 11 10 9 3 193 3 0 298 chain 4084 chr4 191154276 + 63425471 63425514 L1PA4 6152 - 80 123 206148 43 chain 12686 chr4 191154276 + 63425514 63425650 L1PA4 6152 + 6015 6151 149500 136 chain 515891 chr4 191154276 + 63431506 63438088 L1PA7 6471 - 4 6466 5585 9 4 0 187 0 2 167 33 2 141 115 0 255 1 4 73 1 0 9 1 0 484 1 0 150 11 0 57 0 3 395 0 4 1028 13 13 11 0 1 1317 1 0 55 1 2 743 16 10 7 0 6 39 21 40 570 1 17 89 3 0 165 2 0 166 6 7 234 chain 6640 chr4 191154276 + 63455007 63455108 MER44B 551 + 337 445 180166 26 7 12 38 0 2 30 chain 84028 chr4 191154276 + 63460848 63461853 LTR13 1007 + 0 1007 41892 381 2 3 56 1 0 170 1 2 203 0 1 191 chain 542684 chr4 191154276 + 63467994 63474011 L1PA3long 6157 + 2 6147 2393 5 3 0 145 0 1 612 11 139 2010 0 1 1445 0 4 280 0 5 203 8 0 1295 chain 14174 chr4 191154276 + 63516067 63516876 THE1B 368 - 62 368 143974 64 1 0 12 34 40 23 39 37 14 16 11 50 501 0 55 chain 5557 chr4 191154276 + 63522971 63523038 MER2 342 - 186 253 189498 67 chain 98624 chr4 191154276 + 63532339 63533637 L1PA8 5853 + 4282 5579 37121 54 3 0 56 0 1 6 1 0 360 7 8 242 6 8 547 1 0 15 chain 33121 chr4 191154276 + 63553649 63555061 MLT2A1 477 - 0 477 79026 54 958 22 16 0 2 18 0 2 193 6 3 167 chain 15720 chr4 191154276 + 63555061 63555294 HERVL-int 5654 - 0 233 139210 29 1 0 84 30 31 89 chain 5174 chr4 191154276 + 63569450 63569523 L1PA8 5853 + 5742 5813 193305 17 4 3 47 1 0 4 chain 559097 chr4 191154276 + 63592666 63598687 L1HS 6032 - 3 6031 414 2986 1 0 2082 0 1 246 5 12 701 chain 197735 chr4 191154276 + 63602812 63605231 L1PA7 6471 + 4015 6465 19377 323 0 1 66 0 1 74 0 1 66 1 0 664 10 11 109 1 2 269 2 1 20 0 7 243 1 0 304 0 1 89 5 27 25 1 0 146 chain 2678 chr4 191154276 + 63610203 63610237 L1PA7 6471 - 4199 4233 214644 34 chain 334785 chr4 191154276 + 63610237 63614730 L1PA7 6471 + 2256 6468 12033 43 3 0 50 1 0 285 1 2 274 12 8 583 1 0 22 1 2 24 0 4 47 20 21 285 286 6 427 0 1 60 0 1 9 1 0 231 0 1 792 0 1 186 19 25 50 0 2 246 6 0 309 1 0 55 1 0 69 0 1 83 3 0 7 chain 21130 chr4 191154276 + 63611890 63612138 L1PA4 6152 + 5895 6143 123448 248 chain 202576 chr4 191154276 + 63624850 63627091 L1PA3long 6157 + 3759 6002 19021 1029 0 1 354 0 1 858 chain 13628 chr4 191154276 + 63627099 63627246 L1PA3long 6157 + 6010 6157 145869 147 chain 5714 chr4 191154276 + 63645869 63646140 MLT1F2 592 - 0 280 187982 40 21 22 37 153 161 20 chain 52229 chr4 191154276 + 63667086 63667659 L1PA2 6032 - 3 576 57480 573 chain 3248 chr4 191154276 + 63688999 63689099 LTR12B 2670 - 575 752 220052 31 39 119 6 3 0 21 chain 2963 chr4 191154276 + 63716761 63716903 L1MA8 2339 - 77 211 225835 5 1 0 17 55 50 28 24 22 12 chain 5666 chr4 191154276 + 63732232 63732299 MLT2B1 522 + 68 135 188426 67 chain 7076 chr4 191154276 + 63752336 63752679 MSTD 398 + 12 357 176907 35 28 9 41 1 10 11 193 205 34 chain 33245 chr4 191154276 + 63756106 63756546 L1PA8 5853 + 5414 5847 78810 150 1 0 46 2 0 65 15 13 52 2 1 19 2 1 86 chain 39300 chr4 191154276 + 63765272 63765944 L1PA15 4387 + 3700 4351 70322 113 2 0 11 0 1 19 5 6 37 2 0 26 3 0 17 5 4 75 18 19 76 1 0 27 1 0 35 4 5 14 1 0 18 12 8 6 1 0 48 8 5 44 3 1 11 16 12 13 chain 11258 chr4 191154276 + 63774204 63774341 L1PA8A 6298 - 7 145 155199 24 0 1 113 chain 20197 chr4 191154276 + 63802648 63803014 THE1B 368 + 0 368 126535 77 50 69 8 15 0 18 18 17 110 1 0 69 chain 76030 chr4 191154276 + 63806595 63807563 LTR5_Hs 974 + 0 974 45461 289 0 1 177 0 1 188 1 0 163 8 15 16 23 21 103 chain 105574 chr4 191154276 + 63808647 63809990 L1PA8A 6298 - 990 2329 35356 140 2 0 112 2 1 4 0 1 491 3 0 37 1 2 551 chain 72863 chr4 191154276 + 63809990 63810967 L1PA8A 6298 + 5314 6290 46989 97 1 0 6 0 1 542 5 0 46 0 2 167 0 1 14 34 35 65 chain 48387 chr4 191154276 + 63821292 63821921 L1PA10 4194 + 3501 4136 60191 113 0 1 107 1 5 354 1 4 7 0 1 23 3 0 20 chain 46840 chr4 191154276 + 63839421 63840042 LTR30 714 + 0 629 61348 232 4 0 17 0 5 187 9 20 159 1 0 4 3 0 5 chain 160987 chr4 191154276 + 63840341 63842303 HERV17-int 4347 + 13 2549 23197 14 1 0 51 1 0 34 2 0 27 1 0 158 0 1 28 0 575 160 6 8 59 0 1 87 0 1 4 1 0 160 0 1 86 0 2 685 8 4 313 0 1 76 chain 51141 chr4 191154276 + 63844825 63845524 LTR30 714 - 0 714 58226 13 0 6 71 6 8 57 31 30 297 0 8 224 chain 135309 chr4 191154276 + 63859799 63861346 L1PA4 6152 - 15 1562 26952 338 8 10 5 2 0 1194 chain 103477 chr4 191154276 + 63891223 63892380 L1PA3long 6157 - 2 1159 35843 1157 chain 191769 chr4 191154276 + 63892380 63894491 L1PA3long 6157 + 2922 5035 19888 254 0 1 684 0 1 1173 chain 57427 chr4 191154276 + 63918249 63919098 LTR12D 1347 + 419 1334 54275 117 0 31 126 1 18 31 0 24 241 34 30 12 1 0 11 48 47 227 chain 441825 chr4 191154276 + 63919173 63924812 HERV9-int 5642 + 25 5642 9001 688 0 4 173 0 1 16 5 90 22 85 0 88 9 6 320 0 1 503 0 1 768 4 5 149 1 0 338 0 1 1357 7 15 408 11 12 242 1 0 222 9 7 35 19 17 11 1 0 59 1 0 14 30 7 17 13 7 13 chain 50276 chr4 191154276 + 63927478 63928228 LTR12 884 + 15 869 58803 207 0 127 32 2 0 69 116 95 324 chain 28992 chr4 191154276 + 63941171 63941632 L1PA14 3548 - 83 521 89027 10 6 0 41 1 0 16 1 0 5 1 0 15 4 2 33 4 0 13 1 0 109 1 0 48 1 2 34 9 6 13 8 4 87 chain 7096 chr4 191154276 + 63951398 63951520 L1P4a 3072 - 2771 2907 176786 18 20 32 75 0 2 9 chain 97741 chr4 191154276 + 63962982 63964162 L1P1 4361 - 3184 4357 37352 476 7 0 127 1 0 80 0 1 489 chain 408760 chr4 191154276 + 63964163 63968772 L1PA3long 6157 + 1513 6157 9841 189 0 1 388 0 1 948 0 26 111 3 1 718 0 2 456 0 4 218 1 3 1167 0 1 410 chain 32874 chr4 191154276 + 63976217 63976695 L1PA8 5853 + 5383 5853 79410 85 5 9 87 1 0 46 2 0 59 5 0 10 1 0 11 1 0 50 2 1 18 5 4 90 chain 5812 chr4 191154276 + 63979141 63979223 Tigger1 2417 - 2333 2417 187026 30 1 3 51 chain 188391 chr4 191154276 + 63980849 63983094 L1PA6 6164 - 2 2238 20202 338 14 3 513 13 7 17 0 1 260 1 0 127 7 8 949 0 7 6 chain 112770 chr4 191154276 + 64010104 64011553 L1PA8 5853 - 0 1445 33455 111 3 2 63 0 1 68 2 0 44 1 0 218 0 2 257 4 3 71 11 9 596 chain 79004 chr4 191154276 + 64011553 64012539 L1PA8 5853 + 3419 4406 44062 102 1 0 227 0 1 455 0 1 201 chain 55596 chr4 191154276 + 64018505 64019231 LTR12 884 - 15 877 55364 137 5 9 346 2 0 35 1 134 70 0 2 112 1 0 17 chain 45476 chr4 191154276 + 64029529 64030042 MER9a3 513 - 0 513 62520 513 chain 285408 chr4 191154276 + 64044554 64047857 L1PA4 6152 - 0 3297 14329 113 0 1 607 0 1 445 0 4 309 2 1 769 10 0 393 1 0 222 0 1 109 1 0 322 chain 137984 chr4 191154276 + 64047857 64049595 L1P1 4361 + 385 2109 26474 45 3 4 35 0 1 552 6 7 10 0 1 195 9 10 273 5 8 474 23 0 23 0 1 85 chain 44396 chr4 191154276 + 64050187 64050804 LTR12D 1347 + 436 1333 63694 19 0 1 80 0 31 131 1 18 276 9 10 17 21 251 63 chain 393663 chr4 191154276 + 64050856 64055746 HERV9-int 5642 + 0 4824 10331 296 0 3 247 22 26 223 1 0 312 82 3 4 0 1 236 7 8 503 3 0 1765 48 49 111 1 0 402 0 4 284 0 1 254 0 3 89 chain 41407 chr4 191154276 + 64058168 64058774 LTR12D 1347 + 405 1334 67407 38 1 2 32 41 0 18 0 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65127048 MER41B 635 - 569 635 195078 27 0 2 37 chain 16255 chr4 191154276 + 65153364 65153577 HSMAR1 1287 + 25 240 137594 106 0 1 22 1 2 84 chain 5668 chr4 191154276 + 65190967 65191036 LTR10E 629 + 480 548 188409 52 1 0 16 chain 29391 chr4 191154276 + 65199456 65199773 AluYb8 318 + 0 313 87112 126 4 0 187 chain 114753 chr4 191154276 + 65201534 65202839 L1PA5 6144 - 2301 3615 32814 152 3 9 5 2 0 421 0 5 722 chain 203771 chr4 191154276 + 65202839 65205164 L1PA5 6144 + 3826 6138 18940 659 5 0 58 0 1 1495 9 0 99 chain 66726 chr4 191154276 + 65210686 65211429 L1PA4 6152 + 5402 6152 49767 195 0 6 209 0 1 339 chain 83905 chr4 191154276 + 65221595 65222574 LTR5B 1012 + 0 998 41950 123 0 14 585 0 1 103 0 4 168 chain 46062 chr4 191154276 + 65229052 65229630 LTR10C 591 - 0 591 61986 53 20 0 7 0 21 188 0 12 310 chain 42851 chr4 191154276 + 65240130 65240613 L1PA4 6152 - 0 483 65593 483 chain 3663 chr4 191154276 + 65244513 65244557 U5 65 + 0 44 212518 44 chain 58363 chr4 191154276 + 65305085 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67576938 67578694 LTR12C 1709 - 0 1708 26322 84 8 7 60 1 0 330 11 4 106 1 0 6 1 0 275 12 11 123 41 0 98 0 1 135 1 0 4 5 9 154 1 2 299 chain 3608 chr4 191154276 + 67577956 67577997 LTR12C 1709 - 847 887 84011 25 1 0 15 chain 510975 chr4 191154276 + 67579328 67585766 L1PA7 6471 + 15 6456 6073 228 9 10 160 16 14 354 3 1 182 0 3 54 18 0 6 0 9 211 36 37 20 0 1 458 0 1 4 1 0 497 1 0 84 0 1 282 7 0 230 0 1 230 0 1 741 15 16 353 3 4 29 6 7 306 0 1 269 0 4 723 0 1 73 0 3 64 0 1 9 0 2 434 1 0 105 0 2 67 1 0 5 1 0 7 0 1 135 chain 50370 chr4 191154276 + 67591642 67592197 L1PA5 6144 - 0 555 58736 555 chain 8157 chr4 191154276 + 67608117 67608255 L1PA15 4387 - 382 517 170188 73 1 0 29 15 13 20 chain 11254 chr4 191154276 + 67608271 67608403 L1PA6 6164 + 6024 6156 155211 132 chain 22489 chr4 191154276 + 67631462 67631810 THE1B 368 + 2 368 118069 37 1 16 25 32 33 25 0 4 30 2 1 120 1 0 75 chain 56423 chr4 191154276 + 67648492 67649172 L1P1 4361 + 1 680 54848 154 6 0 6 0 6 407 1 0 106 chain 165984 chr4 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chain 90310 chr4 191154276 + 68397569 68398610 L1PA5 6144 + 5089 6129 39532 205 1 0 835 chain 46137 chr4 191154276 + 68417799 68418354 LTR19B 566 - 0 566 61905 76 5 10 165 0 1 13 1 0 167 0 2 95 7 11 26 chain 8225 chr4 191154276 + 68440788 68440900 MER63D 473 - 325 435 169811 57 2 0 53 chain 53951 chr4 191154276 + 68479402 68480160 MER4E 760 + 0 760 56403 22 2 0 102 1 0 27 12 15 57 3 0 49 16 4 88 0 2 13 0 4 48 0 1 12 1 0 62 1 0 80 0 4 18 0 6 103 0 1 12 0 1 29 chain 137024 chr4 191154276 + 68502084 68503653 SVA_C 1631 + 3 1611 26635 14 3 8 694 0 40 105 1 0 143 15 14 21 0 1 259 5 0 309 chain 7733 chr4 191154276 + 68508844 68508930 L1PA3long 6157 + 6071 6157 172693 86 chain 15945 chr4 191154276 + 68549179 68549408 MER30 238 + 0 238 138536 107 4 16 30 6 0 7 5 11 18 3 0 49 chain 4323 chr4 191154276 + 68557765 68557839 L1PB1 5432 - 19 92 202922 9 1 0 9 1 4 21 1 0 24 2 0 6 chain 23443 chr4 191154276 + 68575532 68575811 THE1B-int 1605 - 8 286 113415 59 1 0 219 chain 42104 chr4 191154276 + 68587379 68588008 MER41B 635 - 0 635 66496 126 0 1 40 15 17 30 21 14 144 0 17 52 10 0 20 7 9 29 13 14 122 chain 112810 chr4 191154276 + 68595947 68597245 L1PA6 6164 - 5 1306 33439 844 1 0 291 0 4 162 chain 50867 chr4 191154276 + 68597245 68597825 L1PA6 6164 + 4274 4859 58285 96 0 4 33 0 1 451 chain 83352 chr4 191154276 + 68606894 68608061 L1PB1 5432 - 106 1245 42180 17 29 18 10 1 0 44 7 6 10 2 1 52 3 1 8 2 0 3 2 0 12 3 2 4 2 0 21 7 0 8 9 15 110 0 1 6 3 1 353 3 0 436 chain 23186 chr4 191154276 + 68622850 68623204 MER83 447 - 53 447 114746 6 0 6 9 1 0 43 33 31 119 3 18 64 0 22 76 chain 29617 chr4 191154276 + 68657839 68658148 AluYb9 318 + 0 309 86154 309 chain 345620 chr4 191154276 + 68676879 68681434 L1PA8A 6298 + 1684 6094 11743 41 2 0 626 0 1 11 0 3 135 0 1 11 0 1 5 1 0 336 2 0 110 0 4 232 0 1 94 0 1 119 5 1 283 16 0 178 0 1 497 0 2 20 0 1 315 10 4 94 0 1 12 3 2 64 1 5 219 1 2 29 2 1 18 0 1 173 0 5 21 20 0 48 128 0 76 13 15 66 1 4 104 0 1 201 4 6 208 chain 3959 chr4 191154276 + 68718082 68718175 MER5A 189 - 42 137 207997 31 34 36 28 chain 36933 chr4 191154276 + 68728347 68728770 L1PA5 6144 + 5706 6140 73607 288 0 1 105 0 10 30 chain 6519 chr4 191154276 + 68743649 68743725 L1PA8 5853 + 5777 5853 181080 76 chain 48526 chr4 191154276 + 68753212 68753732 L1PA2 6032 - 1393 1913 60018 520 chain 128732 chr4 191154276 + 68753732 68755117 L1PA2 6032 + 4644 6029 28381 1385 chain 3373 chr4 191154276 + 68761938 68762037 LTR12C 1709 - 600 658 217630 17 47 6 35 chain 2998 chr4 191154276 + 68761961 68761994 LTR12C 1709 - 705 738 225067 33 chain 5414 chr4 191154276 + 68803408 68803470 L1PA16 3655 - 205 267 190854 62 chain 556777 chr4 191154276 + 68833132 68839160 L1PA2 6032 - 2 6031 637 5293 0 1 735 chain 281415 chr4 191154276 + 68842511 68847224 L1PA11 4918 - 414 4895 14569 15 2 1 14 2 0 72 2 0 8 2 1 25 0 2 27 13 8 257 1 0 383 0 2 29 1 0 116 14 0 179 5 14 345 0 90 202 23 19 24 0 39 85 1 0 181 11 16 85 0 4 62 2 0 67 1 2 21 771 415 121 0 3 145 0 3 171 14 16 347 4 5 171 0 2 7 0 1 160 50 46 101 0 1 48 0 9 118 2 1 5 2 0 33 1 0 41 11 9 15 6 5 31 11 8 29 2 0 19 chain 25027 chr4 191154276 + 68853991 68854271 AluYk4 311 + 0 280 104653 280 chain 153619 chr4 191154276 + 68869729 68872350 L1PA11 4918 + 1064 4567 24142 38 0 1 57 6 5 170 0 4 46 10 14 100 5 9 42 29 37 22 0 3 84 3 4 68 0 27 20 4 1 391 35 38 355 0 1160 241 318 17 107 16 17 90 0 1 43 14 5 50 12 11 47 12 11 6 2 0 66 2 0 16 1 0 11 30 21 10 13 9 15 1 0 13 chain 16428 chr4 191154276 + 68871475 68871670 AluSc 308 + 38 234 137122 165 1 2 29 chain 266687 chr4 191154276 + 68897029 68900742 HERVH-int 3825 + 0 3825 15352 244 0 5 83 1 0 78 11 10 38 15 130 16 7 0 10 0 158 6 1 0 397 0 6 5 0 1 36 30 0 134 0 1 11 7 6 56 9 0 222 0 4 31 0 27 370 5 10 402 22 26 39 8 3 280 13 13 116 166 1 11 0 4 26 1 0 76 0 3 730 chain 68604 chr4 191154276 + 68950455 68951190 L1PA2 6032 - 4 739 48984 735 chain 32600 chr4 191154276 + 68953439 68953807 L1PA3long 6157 - 1 368 79847 4 1 0 363 chain 57232 chr4 191154276 + 68953807 68954453 L1P1 4361 + 2177 2823 54380 646 chain 113120 chr4 191154276 + 68959032 68960270 L1PA3long 6157 + 4912 6150 33343 1238 chain 21543 chr4 191154276 + 68973402 68973670 AluSc 308 + 28 293 121990 254 3 0 11 chain 29794 chr4 191154276 + 68986095 68986405 AluYa5 310 - 0 310 85468 310 chain 2903 chr4 191154276 + 68990816 68990886 MADE2 80 + 5 73 226993 20 23 21 27 chain 10153 chr4 191154276 + 68999569 68999686 THE1B 368 - 251 368 159835 117 chain 282144 chr4 191154276 + 69010069 69014056 L1PA10 4194 - 44 4019 14529 33 3 1 313 5 7 146 0 1 350 1 5 439 4 3 202 4 1 25 1 2 480 11 10 20 0 1 96 1 2 39 5 10 196 0 1 63 7 11 77 1 0 144 1 3 84 11 0 8 0 8 168 3 4 78 1 28 102 29 34 54 15 16 102 0 1 289 8 5 24 1 2 51 21 16 15 1 0 10 1 0 20 1 0 15 2 0 22 44 19 8 1 0 15 2 0 21 1 0 9 1 0 9 25 19 6 2 0 8 3 0 13 5 0 11 chain 35264 chr4 191154276 + 69014446 69014921 LTR15 485 - 10 485 75840 12 6 7 16 7 0 12 0 1 30 2 1 115 0 4 125 0 2 150 chain 24774 chr4 191154276 + 69037880 69038232 THE1B 368 + 0 368 106034 37 34 49 106 0 2 100 1 0 74 chain 120633 chr4 191154276 + 69038232 69040072 THE1B-int 1605 + 0 1597 30828 183 0 3 139 283 11 6 1 0 89 0 25 337 3 4 335 17 17 159 2 3 286 chain 516561 chr4 191154276 + 69059782 69065922 L1PA2 6032 + 6 6031 5526 148 14 13 85 5 4 270 4 0 52 0 1 118 0 7 73 129 1 345 11 12 1063 0 1 818 0 1 1121 0 3 889 0 5 995 chain 88216 chr4 191154276 + 69065922 69066929 L1PA2 6032 + 3134 4139 40098 488 0 1 153 4 1 362 chain 80651 chr4 191154276 + 69066929 69067818 L1PA2 6032 + 4142 5031 43321 889 chain 90668 chr4 191154276 + 69067818 69068807 L1PA2 6032 + 5036 6025 39229 989 chain 255065 chr4 191154276 + 69068807 69071704 L1PA4 6152 + 3250 6143 15979 494 0 1 153 4 1 1402 2 0 842 chain 13011 chr4 191154276 + 69098437 69098583 L1PA4 6152 - 9 155 148198 146 chain 48367 chr4 191154276 + 69102674 69103290 L1PA7 6471 - 17 630 60202 133 24 23 166 0 1 147 6 0 125 0 3 15 chain 4930 chr4 191154276 + 69116156 69116270 L1MC1 2226 - 42 142 195929 29 7 6 14 1 0 7 9 0 7 1 0 17 3 1 19 chain 26618 chr4 191154276 + 69121071 69121423 L1PA8 5853 + 5507 5853 97603 57 1 0 45 2 0 73 1 0 7 1 0 37 0 1 13 2 1 17 5 4 91 chain 30032 chr4 191154276 + 69127825 69128250 MER41-int 2638 + 365 788 84717 88 22 20 56 2 3 164 3 0 31 0 2 59 chain 8573 chr4 191154276 + 69137212 69137325 THE1D-int 1627 - 13 124 167893 63 1 0 44 1 0 4 chain 20244 chr4 191154276 + 69142459 69142779 THE1D 372 + 0 324 126400 100 10 8 32 3 0 29 32 41 114 chain 67803 chr4 191154276 + 69147196 69148144 LTR5_Hs 974 - 14 974 49320 26 34 33 83 0 2 28 10 14 89 15 16 12 0 1 139 0 1 54 7 11 451 chain 26494 chr4 191154276 + 69192669 69192974 AluSp 311 + 0 302 98067 24 3 0 278 chain 3253 chr4 191154276 + 69221519 69221555 L1ME1 1623 + 1216 1252 219939 36 chain 27138 chr4 191154276 + 69230000 69230346 THE1D-int 1627 + 23 367 95801 105 2 0 239 chain 15756 chr4 191154276 + 69232670 69232861 L1PA8A 6298 + 6100 6291 139091 191 chain 4472 chr4 191154276 + 69251537 69251586 L1MA5A 2387 - 108 157 201100 49 chain 39226 chr4 191154276 + 69255044 69255635 LTR9B 643 - 10 643 70416 21 25 24 144 32 31 180 6 8 15 7 9 81 0 37 10 0 3 70 chain 25398 chr4 191154276 + 69269446 69269754 AluSg7 307 + 0 297 102694 37 12 0 94 0 1 165 chain 27890 chr4 191154276 + 69271611 69272004 LTR7 482 + 0 473 93396 51 26 64 85 0 10 14 8 40 16 1 0 9 0 1 183 chain 28642 chr4 191154276 + 69272928 69273321 LTR7 482 - 7 482 90550 91 0 2 58 7 17 15 0 31 36 0 1 109 9 47 68 chain 52294 chr4 191154276 + 69275099 69275803 MER4-int 2692 + 1987 2692 57433 32 1 0 151 1 0 92 0 1 160 13 14 236 0 1 18 chain 31554 chr4 191154276 + 69275850 69276254 MER4A1 472 + 41 472 81557 70 0 1 112 2 23 175 0 5 45 chain 33364 chr4 191154276 + 69278766 69279582 LTR10D 510 - 0 510 78629 104 2 3 62 0 1 69 0 1 39 1 0 3 318 0 41 12 6 62 1 21 12 1 0 7 12 9 70 chain 502185 chr4 191154276 + 69285972 69292048 L1PA6 6164 + 0 6162 6714 45 0 14 79 4 16 45 0 1 83 58 72 154 2 1 325 0 1 103 0 25 122 0 3 822 25 29 179 0 3 210 1 2 253 0 3 1514 0 1 178 0 1 1031 0 3 793 0 1 50 chain 3209 chr4 191154276 + 69296943 69297019 LTR33 499 + 64 139 220750 16 29 28 31 chain 24417 chr4 191154276 + 69303406 69303680 L1PA6 6164 - 1083 1358 107986 270 0 1 4 chain 20556 chr4 191154276 + 69303686 69303909 L1PA6 6164 + 5092 5315 125452 223 chain 71909 chr4 191154276 + 69303910 69304756 L1PA6 6164 + 5315 6161 47518 846 chain 24838 chr4 191154276 + 69305545 69305834 AluYk4 311 - 23 311 105684 162 1 0 126 chain 114798 chr4 191154276 + 69322417 69323799 L1PA7 6471 + 5102 6459 32844 221 0 2 274 0 4 13 1 4 139 0 1 317 35 0 382 chain 3877 chr4 191154276 + 69330378 69330422 MADE2 80 + 3 47 209196 44 chain 4242 chr4 191154276 + 69367889 69367942 MER47A 366 - 241 295 203983 27 0 1 26 chain 104844 chr4 191154276 + 69369058 69370654 L1P2 5180 + 482 1988 35539 23 176 89 145 22 1 36 7 22 239 7 8 4 1 0 11 0 1 655 1 0 136 0 4 92 1 0 40 chain 550737 chr4 191154276 + 69375522 69381538 L1PA2 6032 - 0 6020 1348 5460 0 4 556 chain 87261 chr4 191154276 + 69393957 69394989 LTR5A 1029 + 1 1029 40665 149 1 0 450 15 13 349 1 0 67 chain 47786 chr4 191154276 + 69395083 69395649 L1PA7 6471 + 5903 6470 60626 234 0 1 332 chain 426442 chr4 191154276 + 69396162 69401855 L1PA8 5853 - 0 5745 9387 6 0 1 86 1 0 19 2 1 30 18 17 12 1 0 21 0 2 50 5 3 43 10 15 63 1 2 443 22 29 472 7 0 126 14 8 40 0 1 975 0 1 294 0 3 19 12 10 128 0 4 47 2 0 7 1 0 4 1 2 271 1 0 199 0 1 15 0 1 158 1 2 73 0 1 169 4 0 335 0 1 23 0 1 408 3 92 107 16 3 101 14 10 146 50 39 62 0 6 2 6 0 335 60 48 152 chain 90317 chr4 191154276 + 69406403 69407763 L1PA8 5853 - 39 1398 39531 51 4 3 16 60 62 74 2 0 36 16 15 19 10 10 18 33 31 389 1 2 71 10 11 416 0 1 98 1 0 5 0 1 30 chain 515747 chr4 191154276 + 69408180 69414295 L1PA4 6152 + 8 6143 5596 298 10 9 229 1 2 138 0 1 15 0 1 81 0 2 191 0 1 64 0 1 19 4 5 199 0 1 650 13 1 468 0 4 65 0 15 114 1 3 695 6 7 394 2 1 962 0 2 972 9 10 515 chain 171978 chr4 191154276 + 69422156 69424471 MER4-int 2692 + 335 2680 21817 319 0 1 116 1 20 50 0 12 132 0 1 84 2 0 352 0 2 23 5 0 11 27 20 86 0 1 188 0 1 28 10 9 225 1 0 28 0 1 209 33 33 60 0 1 138 0 4 93 3 7 39 1 0 51 chain 12721 chr4 191154276 + 69424486 69424701 MER4A1 472 + 8 472 149372 9 0 1 15 1 0 9 6 39 100 17 233 58 chain 171851 chr4 191154276 + 69438358 69440679 Harlequin-int 5206 - 1923 5071 21836 294 0 57 29 20 21 315 1 0 75 7 1 221 6 0 10 1 0 295 6 12 287 0 778 67 0 3 196 2 0 100 0 1 23 31 26 71 1 2 9 0 1 25 0 5 50 1 3 17 0 5 65 5 0 67 7 0 17 chain 182834 chr4 191154276 + 69442731 69446056 HERVH48-int 3304 + 187 3241 20698 13 2 0 26 2 1 28 14 1 12 32 24 4 1 0 66 6 2 4 1 0 22 0 1 50 1 0 23 13 7 76 16 13 19 24 9 33 14 8 19 5 1 10 12 9 55 12 10 42 1 0 30 2 1 70 25 17 63 8 12 42 4 1 10 1 0 21 1 0 14 30 0 32 29 22 7 1 0 15 1 0 23 2 0 20 1 0 20 2 0 5 1 0 6 10 4 121 2 1 12 1 0 8 1 0 185 0 2 5 9 4 22 2 1 27 0 1 60 1 0 278 2 1 8 3 2 246 1 0 18 14 1 64 6 5 12 1 0 47 5 4 225 1 0 3 1 0 19 1 0 44 4 2 44 2 0 17 2 0 5 1 0 5 32 17 9 1 0 9 26 18 12 4 0 11 39 30 27 3 0 8 14 6 25 13 5 9 1 0 23 1 0 5 1 0 18 14 15 12 1 0 7 3 0 60 68 52 68 90 64 22 chain 17298 chr4 191154276 + 69449550 69449838 AluSp 311 + 12 301 134788 22 42 39 59 13 12 81 0 5 71 chain 216144 chr4 191154276 + 69449838 69452960 L1PB1 5432 + 1021 5404 18107 143 0 1 64 4 6 65 0 1 76 0 1278 52 0 1 134 1 0 464 0 1 420 12 5 41 2 0 376 10 11 194 5 8 74 35 36 12 0 4 141 9 10 43 0 1 31 1 0 83 0 1 6 12 11 113 0 3 170 1 4 5 2 0 4 1 0 24 37 29 53 20 17 44 1 0 4 69 55 6 2 0 16 9 8 22 0 3 9 chain 53956 chr4 191154276 + 69460770 69461366 L1PA3long 6157 - 655 1251 56400 596 chain 57941 chr4 191154276 + 69461366 69462023 L1PA3long 6157 + 5509 6157 54009 550 5 1 90 5 0 7 chain 74507 chr4 191154276 + 69463708 69464659 LTR5A 1029 + 0 945 46269 74 0 6 69 15 0 550 0 1 103 16 18 124 chain 178470 chr4 191154276 + 69464670 69467487 HERVK-int 6823 + 3917 6597 21122 401 0 1 283 0 4 247 0 1 353 4 0 266 0 1 40 1 0 9 5 4 198 1 0 23 1 0 94 7 6 36 1 0 39 1 4 79 1 0 43 30 24 31 1 2 4 1 0 39 2 0 6 1 0 23 17 11 11 1 0 19 204 120 7 2 0 12 1 0 13 4 2 11 2 0 32 5 0 9 30 32 8 1 0 8 2 0 27 2 1 7 1 0 13 34 25 17 1 0 4 15 9 10 5 0 11 chain 86299 chr4 191154276 + 69468217 69469223 LTR5B 1012 + 0 1012 41043 101 0 2 26 0 1 183 0 1 86 0 2 610 chain 7284 chr4 191154276 + 69470377 69470479 THE1B 368 + 0 109 175562 15 0 6 38 4 5 45 chain 287462 chr4 191154276 + 69472744 69476247 L1PA6 6164 - 4 3519 14190 129 3 1 21 0 1 23 7 9 790 19 18 519 1 0 685 0 1 67 0 2 70 12 20 616 0 1 249 0 1 292 chain 255354 chr4 191154276 + 69484509 69487713 L1P2 5180 + 2 3228 15966 148 1 0 4 10 0 7 1 39 14 0 1 32 6 5 74 5 4 184 0 1 48 1 0 224 1 0 5 1 0 456 1 0 171 2 1 786 0 2 71 0 1 102 1 3 290 1 0 497 3 0 11 1 0 45 chain 55251 chr4 191154276 + 69487713 69488499 L1P2 5180 - 4371 5150 55399 16 1 0 5 2 1 143 0 1 128 1 0 7 1 0 206 23 22 33 1 0 53 2 1 33 19 18 112 chain 13693 chr4 191154276 + 69497079 69497223 AluYb8 318 - 7 151 145623 144 chain 9797 chr4 191154276 + 69504691 69504855 LTR9 672 + 0 167 161605 50 17 20 16 1 0 70 1 2 9 chain 46691 chr4 191154276 + 69504883 69505449 L1PA7 6471 + 5903 6470 61463 236 0 1 330 chain 102033 chr4 191154276 + 69505971 69507375 L1PA8 5853 - 0 1442 36251 84 10 9 19 2 1 40 8 7 14 5 4 67 2 0 46 3 8 32 0 3 32 4 5 469 0 2 15 5 9 59 6 7 150 1 5 146 8 32 177 chain 11801 chr4 191154276 + 69512470 69512608 L1PA4 6152 - 11 149 153037 138 chain 168538 chr4 191154276 + 69524563 69526874 MER4-int 2692 + 335 2680 22220 84 14 20 214 1 2 114 0 6 9 0 13 42 0 2 144 0 1 84 2 0 21 0 5 323 0 2 32 4 0 11 11 9 91 0 1 188 0 1 28 10 9 225 1 0 28 0 1 209 25 25 68 0 1 101 0 1 133 3 7 39 1 0 51 chain 8455 chr4 191154276 + 69526929 69527028 MER4A1 472 + 81 181 168538 68 0 1 31 chain 33100 chr4 191154276 + 69537459 69537863 MER48 407 + 3 407 79053 404 chain 188026 chr4 191154276 + 69538216 69541579 HERVH48-int 3304 + 119 3245 20236 7 2 0 8 6 2 7 2 0 10 2 0 3 4 0 14 3 1 10 1 0 5 7 5 5 2 0 24 1 0 38 55 34 4 1 0 70 5 0 75 1 0 15 22 13 83 1 0 7 14 12 55 12 3 15 9 5 10 12 9 70 2 0 40 1 0 27 2 1 67 28 20 117 5 2 10 1 0 20 1 0 9 6 5 32 12 7 16 2 0 6 1 0 15 1 0 23 2 0 20 1 0 20 2 0 5 1 0 6 10 4 121 2 1 11 1 0 77 16 17 100 0 2 5 3 7 18 3 12 78 1 0 76 15 16 189 2 0 6 5 4 244 1 0 18 14 1 69 1 0 12 1 0 47 9 8 221 1 0 3 1 0 19 1 0 44 4 2 44 2 0 17 2 0 7 2 0 11 2 0 5 61 40 12 4 0 11 39 30 27 3 0 8 14 6 25 13 5 9 1 0 23 1 0 5 1 0 24 8 9 12 1 0 7 3 0 60 64 48 72 90 64 26 chain 500048 chr4 191154276 + 69543454 69549379 L1PA4 6152 - 236 6135 6838 441 0 1 404 1 0 6 4 5 1364 0 1 12 8 6 505 0 1 990 35 7 143 0 1 705 9 10 273 2 1 1023 chain 10966 chr4 191154276 + 69557929 69558119 THE1B-int 1605 - 870 1082 156339 18 36 56 29 2 4 105 chain 5634 chr4 191154276 + 69561238 69561372 L1MB8 1703 - 1475 1598 188719 49 38 35 32 8 0 7 chain 69434 chr4 191154276 + 69568483 69569575 MER11A 1151 + 0 1151 48637 79 0 8 141 1 0 66 0 11 27 37 0 113 0 1 86 0 12 138 6 9 11 12 13 28 0 4 13 54 55 17 5 63 99 12 11 80 12 11 55 chain 7314 chr4 191154276 + 69580591 69580683 MER4A 717 - 597 691 175341 69 0 2 23 chain 9166 chr4 191154276 + 69586664 69586772 L1P1 4361 - 3785 3893 163042 108 chain 60440 chr4 191154276 + 69586772 69587480 L1PA4 6152 + 2832 3541 52613 290 0 1 418 chain 20090 chr4 191154276 + 69587480 69587703 L1PA4 6152 + 5081 5304 126312 223 chain 72692 chr4 191154276 + 69587703 69588538 L1PA4 6152 + 5308 6152 47173 827 0 9 8 chain 40926 chr4 191154276 + 69612197 69612668 L1PA5 6144 - 2 471 68002 8 2 0 461 chain 516687 chr4 191154276 + 69633930 69640079 L1PA5 6144 - 1 6144 5517 3250 0 1 695 0 4 6 20 14 215 9 12 5 3 0 1218 1 0 76 7 6 5 0 1 87 1 0 34 0 1 336 33 29 148 chain 14136 chr4 191154276 + 69643806 69643972 L1PA8A 6298 + 5578 5745 144085 10 0 1 156 chain 5802 chr4 191154276 + 69658424 69658498 L1MB2 1706 + 951 1025 187124 74 chain 33483 chr4 191154276 + 69667027 69667897 HERV30-int 1034 + 162 754 78437 38 1 0 59 34 1 43 17 12 38 12 0 77 1 0 90 21 6 33 37 3 19 108 51 15 120 39 49 39 0 19 chain 11906 chr4 191154276 + 69711646 69711803 THE1C-int 1605 - 1449 1605 152577 141 2 1 14 chain 67084 chr4 191154276 + 69714586 69715401 L1PA7 6471 + 5646 6467 49623 433 10 16 372 chain 43641 chr4 191154276 + 69730773 69731366 LTR10C 591 + 0 589 64641 37 5 6 344 14 12 43 0 2 66 6 1 78 chain 9017 chr4 191154276 + 69731970 69732079 MSTA-int 1630 + 18 127 165514 109 chain 34460 chr4 191154276 + 69750154 69750536 L1P1 4361 + 3948 4328 76977 202 1 0 155 1 0 23 chain 14454 chr4 191154276 + 69752275 69752453 L1P1 4361 - 922 1100 143034 178 chain 13869 chr4 191154276 + 69777954 69778254 L1PB1 5432 - 1470 1758 145010 154 111 98 4 0 1 31 chain 42426 chr4 191154276 + 69787900 69788440 MER9a2 513 + 0 513 66110 48 0 1 250 32 0 82 0 4 128 chain 433057 chr4 191154276 + 69801048 69806410 L1PA6 6164 + 764 6151 9236 76 0 1 963 0 2 519 12 0 203 0 10 255 0 4 393 0 1 109 0 1 99 0 1 106 0 4 314 5 6 73 0 2 45 0 1 222 1 2 192 0 4 595 0 1 10 0 1 1014 1 2 60 0 1 95 chain 46593 chr4 191154276 + 69820523 69821130 LTR10C 591 + 0 589 61536 508 16 3 47 5 0 31 chain 9000 chr4 191154276 + 69821738 69821849 MSTA-int 1630 + 22 133 165597 111 chain 18028 chr4 191154276 + 69834204 69834444 THE1B-int 1605 + 96 356 132782 16 0 7 114 1 12 20 0 2 89 chain 84710 chr4 191154276 + 69854356 69855374 MER11C 1089 + 2 1024 41636 561 8 5 48 1 3 385 0 5 15 chain 204951 chr4 191154276 + 69856287 69858639 L1PA4 6152 - 16 2364 18860 132 27 27 593 0 1 81 6 1 1513 chain 34963 chr4 191154276 + 69916582 69917055 LTR2B 499 + 5 499 76244 7 0 1 58 6 5 35 0 19 178 0 1 8 1 0 150 3 5 27 chain 53643 chr4 191154276 + 69918299 69919044 Harlequin-int 5206 + 125 887 56591 7 0 3 67 0 4 64 14 19 14 0 4 11 8 9 25 6 11 36 1 2 84 3 0 132 3 0 270 chain 27299 chr4 191154276 + 69928769 69929061 AluYa5 310 + 14 306 95279 292 chain 207668 chr4 191154276 + 69941508 69944199 L1PA7 6471 - 10 2685 18663 480 3 0 360 2 1 81 0 1 235 0 1 30 0 1 322 13 10 265 6 9 112 11 10 14 0 4 317 0 2 5 0 4 6 0 1 5 51 23 5 0 2 232 0 1 136 chain 8445 chr4 191154276 + 69945107 69945207 L1PA5 6144 + 6039 6139 168595 100 chain 83296 chr4 191154276 + 69950181 69951351 L1PA8 5853 - 0 1166 42207 92 6 5 14 8 7 42 5 4 10 2 1 70 2 0 46 1 0 76 0 1 40 3 0 68 3 0 5 7 10 253 3 4 19 0 2 22 0 3 50 2 0 181 0 1 140 chain 3140 chr4 191154276 + 69956331 69956382 THE1B 368 - 261 313 222183 21 5 6 25 chain 5862 chr4 191154276 + 69961544 69961776 L1MB8 1703 + 1493 1654 186566 39 14 13 33 123 53 23 chain 36092 chr4 191154276 + 69977691 69978148 LTR2 463 + 2 463 74771 59 0 3 293 17 18 88 chain 125169 chr4 191154276 + 69980015 69981525 LTR12C 1709 - 0 1709 29333 465 0 1 15 0 4 107 2 0 6 1 0 79 0 200 238 4 0 296 0 1 297 chain 50268 chr4 191154276 + 69982237 69982941 LTR30 714 + 1 714 58812 236 3 4 4 1 0 204 11 12 11 1 2 142 7 13 36 13 14 35 chain 47414 chr4 191154276 + 70005824 70006423 LTR30 714 + 11 624 60890 230 0 6 6 3 2 14 3 6 26 0 1 81 0 5 236 chain 9556 chr4 191154276 + 70040681 70040790 MSTA-int 1630 - 1503 1612 162807 109 chain 178446 chr4 191154276 + 70041768 70043965 L1PA5 6144 + 3947 6140 21123 43 0 3 204 0 1 106 0 1 186 0 4 251 3 0 61 6 7 513 2 0 96 1 0 44 0 2 342 0 2 140 0 5 23 5 1 67 13 0 91 chain 21804 chr4 191154276 + 70044035 70044300 LTR10C 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70949146 L1PA5 6144 + 6024 6144 158849 120 chain 55931 chr4 191154276 + 70951994 70952663 L1PA7 6471 - 10 681 55166 150 6 7 172 0 1 341 chain 40549 chr4 191154276 + 70952673 70953191 L1PA7 6471 + 5237 5757 68509 171 0 1 205 1 0 84 1 3 56 chain 10045 chr4 191154276 + 70958501 70958643 L1PB1 5432 - 132 271 160345 63 1 0 16 2 1 29 0 1 21 2 0 8 chain 14429 chr4 191154276 + 70962118 70962481 L1PB1 5432 - 9 314 143118 11 1 0 8 1 0 12 1 0 22 1 0 20 97 54 15 1 0 44 1 0 16 2 1 52 3 1 8 5 1 12 1 0 8 1 0 20 chain 33064 chr4 191154276 + 70972002 70972359 L1PA2 6032 + 5515 5872 79107 357 chain 185679 chr4 191154276 + 70977140 70979232 L1PA5 6144 - 0 2093 20445 113 0 3 1400 1 0 573 1 0 4 chain 73171 chr4 191154276 + 70983405 70984253 L1PA5 6144 - 1 850 46936 454 7 5 5 0 2 299 0 1 83 chain 38994 chr4 191154276 + 71009771 71010410 L1PB1 5432 - 8 617 70752 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 14 16 10 7 3 0 16 2 1 42 1 0 16 2 1 53 2 0 5 20 15 33 3 0 5 5 6 288 chain 45249 chr4 191154276 + 71010430 71011034 L1PB1 5432 + 4192 4801 62769 45 5 3 84 0 5 41 0 5 238 11 8 180 chain 4190 chr4 191154276 + 71015248 71015294 MADE1 96 + 50 96 204683 46 chain 8132 chr4 191154276 + 71017900 71017992 L1PA2 6032 + 5929 6022 170318 83 0 1 9 chain 9377 chr4 191154276 + 71022613 71022717 L1PA5 6144 - 4 108 163665 104 chain 71190 chr4 191154276 + 71033216 71034007 L1PA3long 6157 + 5367 6157 47850 441 1 0 349 chain 20075 chr4 191154276 + 71070662 71070939 L1PA8 5853 + 5580 5853 126898 30 2 0 68 2 1 29 1 0 32 2 1 19 2 1 73 0 2 17 chain 510459 chr4 191154276 + 71072933 71079071 L1PA6 6164 - 2 6164 6123 6 4 0 329 0 1 108 1 2 415 0 1 307 0 1 241 0 5 10 0 2 25 0 1 738 0 2 361 0 11 279 0 1 98 0 1 887 1 2 348 0 1 25 1 0 531 0 1 242 12 3 15 0 1 594 1 0 40 7 9 53 4 5 54 1 4 140 1 0 23 0 2 58 1 2 177 chain 6725 chr4 191154276 + 71096267 71096353 Tigger1 2417 - 946 1032 179509 86 chain 3279 chr4 191154276 + 71102396 71102436 Tigger3b 1229 - 1142 1182 219397 40 chain 13607 chr4 191154276 + 71108051 71108197 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chain 510997 chr4 191154276 + 71864750 71871138 L1PA7 6471 - 13 6468 6070 148 1 0 177 1 0 433 0 2 75 3 0 264 0 1 263 0 1 422 7 11 80 0 1 42 0 2 160 5 31 31 0 3 141 1 0 161 1 0 96 0 2 82 1 0 16 1 5 35 11 10 138 2 16 416 0 4 85 0 4 201 6 10 181 0 3 10 13 12 162 4 6 544 4 5 80 1 0 33 0 5 64 1 0 58 2 1 182 0 1 52 1 0 261 0 1 216 2 0 5 0 2 103 4 0 6 3 7 155 18 19 222 23 0 89 0 1 66 1 4 51 1 0 19 12 27 47 10 10 176 chain 506964 chr4 191154276 + 71877895 71883652 L1PA5 6144 + 391 6140 6399 636 0 1 48 1 2 159 0 5 945 8 0 126 1 0 490 1 0 554 13 1 578 0 1 980 0 1 379 0 4 257 0 1 581 chain 29759 chr4 191154276 + 71886779 71887091 AluYb9 318 - 6 318 85614 312 chain 6473 chr4 191154276 + 71897529 71897630 LTR7B 505 + 395 498 181448 4 1 0 38 14 17 44 chain 46792 chr4 191154276 + 71900489 71901126 HERVH-int 3825 + 3186 3825 61378 44 40 42 289 0 1 4 2 1 258 chain 23131 chr4 191154276 + 71902551 71902966 LTR7B 505 + 0 441 114993 108 0 10 46 27 44 27 11 22 32 75 63 89 chain 28012 chr4 191154276 + 71908209 71908510 AluYa5 310 - 11 310 92960 206 2 0 93 chain 239009 chr4 191154276 + 71911802 71915051 L1PA11 4918 + 24 4578 16829 18 2 0 36 10 7 27 0 1 4 2 0 13 2 0 50 1 0 20 0 1 10 15 12 208 0 2 19 0 4 810 5 7 147 0 4 123 0 2 15 16 13 142 10 13 81 0 1 40 0 6 215 11 13 107 2 1 5 0 1 11 1 0 47 3 7 460 0 1292 11 0 14 221 0 4 25 0 2 25 4 6 4 0 1 61 2 1 5 5 0 76 2 0 13 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 8556 chr4 191154276 + 71915708 71915825 L1MA7 2200 + 1610 1724 167981 6 2 0 103 1 0 5 chain 545253 chr4 191154276 + 71919553 71925572 L1PA3long 6157 - 0 6157 2039 1878 0 2 119 0 3 2749 0 5 163 2 1 333 0 128 623 0 1 152 chain 532453 chr4 191154276 + 71950131 71956198 L1PA4 6152 - 9 6089 3916 1354 0 2 1530 0 1 943 0 1 792 0 1 92 0 5 62 0 1 36 0 1 595 0 1 111 2 1 4 0 1 546 chain 11565 chr4 191154276 + 71964102 71964266 L1PREC2 3366 - 499 656 154047 13 3 0 4 1 0 44 1 0 54 5 3 39 chain 171595 chr4 191154276 + 71964281 71966694 L1PREC2 3366 + 180 2604 21868 20 0 1 4 24 18 10 1 0 6 35 32 120 10 9 48 0 4 15 2 1 29 0 2 280 1 8 15 3 5 5 2 0 98 10 11 35 0 3 72 1 8 253 0 1 6 1 0 10 11 10 65 16 4 13 0 1 411 0 1 154 5 1 59 0 9 63 0 1 318 5 8 177 chain 489327 chr4 191154276 + 71967252 71972642 L1PA3long 6157 + 628 6149 7396 139 11 139 815 0 1 2556 0 2 1869 chain 99270 chr4 191154276 + 71979980 71981062 L1PA3long 6157 + 5074 6157 36958 1078 0 1 4 chain 10092 chr4 191154276 + 71987202 71987383 LTR12C 1709 + 738 996 160128 17 0 118 88 41 0 35 chain 53376 chr4 191154276 + 71994685 71995493 L1PA15 4387 + 3525 4312 56784 288 7 5 14 4 0 48 15 13 14 2 0 25 1 0 83 0 2 87 2 1 20 6 5 54 2 1 18 9 4 10 1 0 50 6 3 42 chain 332718 chr4 191154276 + 72008672 72012419 L1PA4 6152 - 6 3757 12096 127 36 36 588 0 1 8 2 4 1512 0 1 1474 chain 42121 chr4 191154276 + 72012419 72012879 L1PA4 6152 + 1950 2410 66384 460 chain 4276 chr4 191154276 + 72018446 72018493 MLT2A1 477 - 324 371 203531 47 chain 29064 chr4 191154276 + 72018757 72019136 MLT2A1 477 - 80 477 88702 12 10 0 172 0 31 8 8 5 169 chain 96776 chr4 191154276 + 72030291 72031433 L1PA7 6471 + 5332 6465 37623 23 1 0 974 2 1 128 7 0 7 chain 33754 chr4 191154276 + 72034488 72035385 L1MA2 4263 - 166 802 78013 41 7 0 17 0 4 55 68 64 41 313 0 61 10 76 76 1 0 77 16 12 7 2 0 105 chain 535796 chr4 191154276 + 72040923 72047084 L1PA4 6152 + 0 6143 3475 122 5 19 567 0 1 208 3 0 57 1 2 419 9 0 10 0 9 301 0 1 1344 36 10 244 0 1 200 0 1 832 0 4 282 0 1 30 1 0 215 0 1 493 1 3 170 0 2 64 18 0 37 0 1 492 chain 11581 chr4 191154276 + 72056708 72056893 MER47A 366 + 102 285 153976 4 0 1 46 29 23 28 0 3 78 chain 7489 chr4 191154276 + 72058682 72058900 L1ME3A 1206 - 108 316 174214 31 110 100 77 chain 9079 chr4 191154276 + 72063352 72063453 L1PA5 6144 + 6043 6144 165170 101 chain 8910 chr4 191154276 + 72066416 72066521 L1PA7 6471 + 6352 6457 166085 105 chain 10331 chr4 191154276 + 72156923 72157048 L1PA6 6164 + 6032 6156 158980 20 1 0 104 chain 459763 chr4 191154276 + 72174773 72180648 L1PA8 5853 + 50 5853 8410 22 2 0 10 5 4 10 32 12 189 23 11 126 0 50 51 0 1 87 5 4 40 3 1 753 3 0 4 1 0 199 4 10 243 0 4 143 19 4 453 0 4 65 6 10 34 1 0 29 0 3 228 87 0 215 0 1 118 1 0 687 5 0 359 1 2 104 1 0 31 5 7 66 0 5 117 6 8 122 0 1 309 3 0 3 1 0 77 0 1 157 0 1 20 0 3 296 1 0 34 19 17 63 2 1 13 1 0 48 2 1 12 0 1 6 1 0 56 7 8 29 chain 122105 chr4 191154276 + 72196093 72197457 L1PA5 6144 + 4775 6144 30345 522 0 4 829 2 3 11 chain 27636 chr4 191154276 + 72198157 72198448 AluYd8 298 - 7 298 94247 291 chain 25269 chr4 191154276 + 72243545 72243893 THE1A 353 - 0 353 103373 139 1 7 87 14 13 107 chain 15147 chr4 191154276 + 72250568 72250754 L1PA7 6471 + 6283 6468 140923 169 1 0 16 chain 123734 chr4 191154276 + 72274885 72276393 THE1A-int 1579 + 0 1523 29799 15 1 3 126 0 1 434 0 1 638 8 19 286 chain 91826 chr4 191154276 + 72284540 72285559 L1PA3long 6157 - 5134 6153 39017 1019 chain 464990 chr4 191154276 + 72285559 72290717 L1PA3long 6157 + 994 6157 8220 69 0 1 125 0 3 529 0 1 2918 10 8 658 0 1 697 1 0 4 0 2 147 chain 163413 chr4 191154276 + 72300329 72302273 L1PA7 6471 + 4501 6458 22890 70 1 0 6 0 1 226 0 2 65 2 0 108 6 18 624 1 0 77 1 3 757 chain 5863 chr4 191154276 + 72331187 72331274 MADE1 96 + 1 96 186556 38 4 11 4 0 1 41 chain 7092 chr4 191154276 + 72343562 72343646 L1PA7 6471 + 5537 5621 176816 84 chain 5070 chr4 191154276 + 72343647 72343721 L1PA7 6471 + 5621 5698 194423 47 3 6 24 chain 59557 chr4 191154276 + 72343721 72344463 L1PA7 6471 + 5700 6454 53079 107 1 4 33 0 1 4 1 0 140 5 8 360 0 6 91 chain 8187 chr4 191154276 + 72347302 72347392 MER85 139 + 6 96 170031 90 chain 62140 chr4 191154276 + 72350291 72351237 L1PA13 3608 - 143 1111 51835 17 9 5 26 0 15 6 2 0 5 1 0 9 0 1 28 33 27 10 14 14 29 2 0 41 0 1 26 0 1 44 1 0 14 1 0 6 0 1 7 1 0 37 12 29 270 0 6 104 3 0 62 5 6 121 chain 199353 chr4 191154276 + 72372373 72375029 L1PA11 4918 + 581 3229 19255 289 0 1 484 5 4 62 4 7 385 9 10 53 4 7 274 0 1 170 1 0 52 23 1 89 0 1 4 1 0 154 1 2 5 0 1 82 11 12 70 4 7 103 0 1 317 chain 225529 chr4 191154276 + 72439095 72441773 L1PA4 6152 - 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L1PB1 5432 + 3356 3473 160492 117 chain 9646 chr4 191154276 + 72501875 72502011 MER4-int 2692 + 1293 1444 162373 93 4 20 28 1 0 10 chain 34541 chr4 191154276 + 72504014 72504481 LTR2 463 + 0 463 76845 210 27 22 136 16 17 78 chain 422902 chr4 191154276 + 72506191 72511246 Harlequin-int 5206 + 125 5206 9459 10 0 1 158 3 1 5 1 0 129 0 9 44 3 0 200 1 0 117 0 5 40 0 1 26 1 0 303 4 0 217 3 10 305 0 5 780 0 5 6 0 3 2054 0 1 517 0 1 128 chain 37540 chr4 191154276 + 72511246 72511700 LTR2 463 + 0 463 72765 261 0 8 99 0 1 94 chain 41701 chr4 191154276 + 72535376 72535932 LTR12_ 688 + 0 688 67024 77 25 0 65 0 48 59 0 3 158 1 0 18 1 108 152 chain 284041 chr4 191154276 + 72582179 72585962 L1PA7 6471 - 16 3804 14413 98 18 0 204 0 1 96 1 2 167 0 1 37 9 7 97 0 35 84 6 5 272 11 13 124 2 1 6 0 1 13 8 5 171 0 1 34 1 2 186 2 0 531 3 4 301 1 0 4 1 2 114 17 0 252 34 50 5 0 1 321 0 1 498 20 7 34 chain 75421 chr4 191154276 + 72598748 72599619 L1PA4 6152 - 9 882 45808 96 0 3 21 0 4 375 5 0 374 chain 131191 chr4 191154276 + 72599619 72601112 L1PA4 6152 + 3751 5241 27819 249 1 0 90 17 14 40 0 1 1096 chain 111770 chr4 191154276 + 72603250 72604817 THE1B-int 1605 + 0 1605 33732 265 14 17 146 3 28 10 0 1 42 0 1 43 2 1 36 5 3 71 29 0 9 7 39 9 2 0 426 1 14 6 13 0 155 7 16 190 0 1 76 chain 25208 chr4 191154276 + 72609888 72610196 AluY 311 + 11 303 103693 119 16 0 173 chain 125480 chr4 191154276 + 72626695 72628272 THE1B-int 1605 + 0 1603 29250 15 0 2 411 1 26 151 1 0 998 chain 18314 chr4 191154276 + 72643527 72643767 L1PA7 6471 + 6234 6468 132040 79 4 5 139 7 0 11 chain 110934 chr4 191154276 + 72645810 72647114 L1PA6 6164 + 4863 6160 33954 351 0 1 183 1 0 675 1 0 80 6 0 7 chain 16136 chr4 191154276 + 72656485 72656666 L1PA3long 6157 - 0 181 137949 181 chain 5033 chr4 191154276 + 72657182 72657386 L1MC 810 - 321 526 194791 55 130 131 19 chain 505386 chr4 191154276 + 72657407 72663520 L1PA6 6164 - 21 6163 6503 120 19 20 610 0 6 72 1 0 92 0 1 723 9 11 124 5 9 1592 0 1 4 1 0 369 0 1 61 0 2 626 5 0 772 1 0 244 0 1 84 1 0 7 0 1 116 17 15 183 6 26 50 1 0 4 0 1 194 chain 9273 chr4 191154276 + 72669984 72670094 LTR22A 463 - 127 237 164204 110 chain 47815 chr4 191154276 + 72681414 72682400 L1PB1 5432 + 4699 5424 60611 404 7 2 11 227 2 20 1 0 9 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 50 36 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 33291 chr4 191154276 + 72723561 72724068 LTR21A 479 + 0 479 78743 18 5 4 34 4 1 7 1 0 193 34 12 86 11 11 33 7 6 74 chain 33808 chr4 191154276 + 72728782 72729252 HERVK9-int 4720 + 3865 4720 77929 122 0 2 134 39 276 24 1 0 111 2 149 37 chain 39942 chr4 191154276 + 72729252 72729761 MER9a3 513 + 0 513 69406 13 1 2 96 0 1 153 13 14 156 0 1 77 chain 47027 chr4 191154276 + 72735725 72736317 PABL_B 668 - 2 606 61183 8 0 1 217 0 3 148 0 1 188 10 17 21 chain 23001 chr4 191154276 + 72745529 72745798 AluY 311 + 41 311 115617 91 0 1 178 chain 39829 chr4 191154276 + 72746252 72746824 PRIMA4_LTR 623 - 22 623 69581 42 15 16 102 2 1 44 3 6 19 30 31 77 1 3 59 0 23 178 chain 16763 chr4 191154276 + 72753501 72753876 THE1C 375 - 0 375 136215 25 1 0 94 154 155 101 chain 11864 chr4 191154276 + 72753876 72754078 L1MA7 2200 - 912 1099 152768 109 21 22 13 16 0 43 chain 443811 chr4 191154276 + 72757455 72763374 L1PA8 5853 + 50 5849 8931 22 2 0 10 1 0 6 54 29 184 11 15 740 14 39 433 1 0 123 1 0 424 0 1 37 1 0 335 0 2 124 3 2 146 105 16 89 5 9 34 2 1 16 0 1 234 15 6 1016 4 7 120 5 0 98 1 2 219 1 0 5 0 1 152 0 1 128 44 25 108 11 9 143 7 8 7 0 1 326 6 5 55 1 0 46 2 0 14 3 4 51 1 0 8 0 6 6 8 1 40 2 1 19 1 0 89 chain 7078 chr4 191154276 + 72760147 72760232 L1PA8 5853 - 4804 4889 176899 85 chain 78436 chr4 191154276 + 72770716 72771797 MER11A 1151 + 0 1151 44301 55 0 99 74 1 0 66 4 0 32 0 2 29 0 1 85 0 1 94 0 1 143 5 8 145 25 1 11 8 15 21 17 0 37 0 1 60 6 7 163 chain 34046 chr4 191154276 + 72781403 72781841 LTR15 485 - 7 452 77553 21 0 1 14 2 0 5 1 0 157 0 4 36 0 3 87 0 2 115 chain 27677 chr4 191154276 + 72784943 72785253 AluYf4 310 + 0 310 94127 310 chain 27533 chr4 191154276 + 72785728 72786024 AluYd8 298 - 7 298 94562 6 5 0 285 chain 18513 chr4 191154276 + 72790659 72791043 MSTA 426 + 0 426 131463 63 63 87 56 6 0 16 13 16 54 0 4 6 31 48 76 chain 500724 chr4 191154276 + 72813320 72819413 L1PA6 6164 + 2 6162 6800 188 5 6 38 0 4 271 2 1 41 0 1 228 0 5 143 0 25 212 0 3 209 0 1 53 0 5 176 0 1 706 7 6 864 0 1 504 0 1 230 0 1 53 6 7 352 0 4 170 0 1 595 0 1 206 1 0 633 0 9 45 3 10 13 7 0 74 0 4 11 0 1 47 chain 21735 chr4 191154276 + 72822860 72823204 THE1B 368 + 0 368 121260 44 8 23 101 1 0 30 47 57 113 chain 5953 chr4 191154276 + 72840775 72840852 MER44D 709 - 601 678 185657 77 chain 30103 chr4 191154276 + 72849775 72850192 L1PA8 5853 - 0 414 84473 93 1 0 16 1 0 55 13 11 66 6 4 25 0 4 14 2 1 125 chain 26320 chr4 191154276 + 72852668 72852975 L1PA5 6144 + 5838 6141 98737 297 4 0 6 chain 40782 chr4 191154276 + 72855766 72856315 MLT2A2 560 + 0 560 68201 180 1 0 15 22 23 181 3 14 147 chain 485082 chr4 191154276 + 72862051 72868114 L1PA6 6164 + 275 6159 7555 95 28 35 11 0 1 83 11 10 513 1 0 239 0 1 751 10 11 146 0 1 160 0 2 850 5 6 82 0 5 971 208 3 111 0 4 69 0 1 61 0 1 655 1 2 849 14 0 8 1 15 10 0 2 120 chain 65745 chr4 191154276 + 72890660 72891376 L1PA2 6032 + 5316 6032 50220 716 chain 21465 chr4 191154276 + 72907780 72908060 THE1C 375 + 0 335 122274 23 1 0 46 0 49 17 0 4 64 0 3 129 chain 55259 chr4 191154276 + 72916342 72916955 L1PA3long 6157 - 10 624 55547 243 0 1 370 chain 123090 chr4 191154276 + 72916955 72918333 L1P1 4361 + 2725 4103 30010 1378 chain 2168 chr4 191154276 + 72927340 72927368 L1PA8 5853 + 5534 5562 236968 28 chain 4234 chr4 191154276 + 72927369 72927416 L1PA8 5853 + 5562 5609 204112 47 chain 17639 chr4 191154276 + 72927418 72927666 L1PA8 5853 + 5609 5853 133882 69 2 1 10 1 0 40 1 0 14 1 0 17 1 0 17 1 2 74 chain 8017 chr4 191154276 + 72941369 72941600 L1MB3 1562 + 1322 1522 170949 29 1 0 45 109 79 47 chain 64462 chr4 191154276 + 72968101 72968826 L1PA4 6152 - 6 737 50815 107 0 1 46 0 1 171 0 4 401 chain 323120 chr4 191154276 + 72985198 72989272 L1P3 4156 + 0 4096 12476 233 29 28 59 1 0 45 3 4 29 6 4 104 0 1 190 0 17 79 3 4 18 0 6 30 1 2 501 0 9 1266 2 1 146 0 1 127 1 2 389 38 38 193 1 0 100 14 1 31 0 2 338 1 2 96 chain 75834 chr4 191154276 + 72994940 72995908 LTR5_Hs 974 - 0 974 45580 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 22996 chr4 191154276 + 72997074 72997322 L1PA2 6032 + 5780 6028 115639 248 chain 31151 chr4 191154276 + 72999124 72999592 L1PA13 3608 - 137 590 82256 6 1 0 17 2 0 5 2 0 47 2 0 5 1 0 28 1 2 27 6 5 56 2 0 113 1 0 29 1 0 98 7 4 11 chain 354174 chr4 191154276 + 73003980 73008281 L1PA6 6164 - 2 6164 11503 6 3 0 140 1 0 10 4 5 174 0 1 37 1 0 467 0 4 419 0 1 369 0 1 505 2 1 326 6 3 241 0 3 148 0 1 75 3 2 32 1 2 543 10 11 301 1 2 117 0 2 93 1 1855 65 1 0 4 1 2 194 chain 73281 chr4 191154276 + 73019064 73020094 MER11C 1089 - 16 1083 46894 8 0 1 91 7 27 26 1 0 54 0 1 88 1 2 37 0 1 38 1 0 4 1 5 86 73 72 146 1 0 65 0 4 62 5 14 235 chain 543888 chr4 191154276 + 73029496 73035636 L1PA3long 6157 - 0 6152 2229 5 0 1 137 6 7 596 0 1 285 0 1 241 0 4 985 5 2 708 0 1 855 0 1 1000 0 6 281 1 0 1035 chain 58552 chr4 191154276 + 73042214 73043262 MER4E 760 + 0 735 53674 16 0 1 255 1 2 5 1 0 289 314 0 167 chain 52363 chr4 191154276 + 73049168 73049785 L1PA4 6152 + 5540 6152 57387 352 0 1 110 1 0 5 6 0 30 0 1 113 chain 90347 chr4 191154276 + 73061794 73062819 L1PA4 6152 - 11 1038 39523 112 1 0 209 0 3 703 chain 32529 chr4 191154276 + 73068051 73068637 L1PA16 3655 - 36 600 79977 16 5 0 7 35 21 86 0 6 74 9 8 110 2 0 44 0 2 39 7 6 63 58 50 6 0 1 25 chain 17747 chr4 191154276 + 73076309 73076515 L1PA8 5853 + 5287 5493 133574 206 chain 18952 chr4 191154276 + 73076515 73076811 L1PA8 5853 + 5499 5788 130218 65 2 1 43 2 0 71 19 17 44 2 1 11 10 9 27 chain 4364 chr4 191154276 + 73076811 73076868 L1PA8 5853 + 5795 5852 202401 57 chain 22427 chr4 191154276 + 73077758 73078057 THE1A 353 - 52 353 118351 59 5 9 31 1 0 92 2 1 109 chain 113074 chr4 191154276 + 73078057 73079499 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6152 - 12 1072 38588 302 0 1 757 chain 4783 chr4 191154276 + 73292729 73292784 MLT1E2 623 - 8 63 197549 55 chain 119006 chr4 191154276 + 73301363 73302724 L1PA5 6144 + 4775 6135 31407 190 0 1 328 1 0 89 1 0 752 chain 30142 chr4 191154276 + 73320962 73321348 L1PA7 6471 + 6081 6470 84342 26 1 0 31 4 5 162 3 4 147 0 2 12 chain 27782 chr4 191154276 + 73340461 73340764 AluYa5 310 + 0 302 93761 132 1 0 170 chain 320037 chr4 191154276 + 73342879 73346422 L1PA3long 6157 + 2614 6157 12595 3543 chain 176861 chr4 191154276 + 73374475 73377031 L1MA1 4479 + 1524 4047 21265 86 11 24 22 0 1 4 1 0 8 0 1 227 0 1 143 18 19 22 6 0 7 0 2 76 0 5 40 1 2 88 0 1 171 0 3 117 2 1 56 0 1 4 1 0 12 1 0 103 2 0 33 1 0 58 0 4 6 22 8 78 6 5 20 6 4 161 10 8 19 4 0 76 1 0 12 4 0 40 0 4 80 3 0 8 1 3 95 8 7 18 2 0 54 1 0 9 17 4 130 3 0 6 0 2 16 2 0 16 1 0 74 14 11 19 1 0 88 1 0 5 3 0 95 chain 20728 chr4 191154276 + 73377922 73378213 AluSx4 309 + 12 285 124867 37 24 8 7 2 0 221 chain 554706 chr4 191154276 + 73380554 73386709 L1PA3long 6157 - 0 6157 862 1493 0 1 645 0 1 4017 chain 2383 chr4 191154276 + 73403635 73403682 L1M4c 1769 + 450 499 234358 21 7 9 19 chain 122394 chr4 191154276 + 73405681 73407253 THE1B-int 1605 + 0 1605 30251 432 0 25 277 2 3 45 6 12 408 3 2 230 0 1 164 0 1 5 chain 11679 chr4 191154276 + 73425484 73425645 L1PA10 4194 + 4011 4167 153568 63 3 2 41 3 0 33 1 0 17 chain 549749 chr4 191154276 + 73459436 73465580 L1PA3long 6157 + 6 6157 1481 1434 1 0 125 0 2 932 0 1 450 0 4 308 0 1 282 0 1 1264 0 1 536 2 0 810 chain 7291 chr4 191154276 + 73468660 73468740 L1PA4 6152 + 6071 6151 175502 80 chain 22751 chr4 191154276 + 73491286 73491562 L1PA7 6471 + 6191 6468 116822 208 0 1 68 chain 93264 chr4 191154276 + 73497779 73498924 L1P1 4361 + 4 1154 38478 602 0 4 84 0 1 336 24 24 99 chain 370011 chr4 191154276 + 73498924 73503201 L1P1 4361 - 85 4360 11097 125 1 0 1470 2 1 836 0 1 415 1 0 1299 0 1 8 6 5 114 chain 160783 chr4 191154276 + 73503207 73505037 L1PA5 6144 + 4312 6144 23228 813 1 0 770 0 2 62 1 2 183 chain 7940 chr4 191154276 + 73505037 73505133 L1PA5 6144 + 4936 5032 170020 96 chain 97386 chr4 191154276 + 73505134 73506234 L1PA5 6144 + 5035 6135 37457 1100 chain 56587 chr4 191154276 + 73517128 73517829 L1PA7 6471 + 5760 6461 54792 583 19 16 5 0 3 94 chain 196202 chr4 191154276 + 73520685 73523003 L1PA6 6164 + 3832 6162 19485 840 0 1 4 1 0 236 0 1 259 0 1 184 0 8 254 0 2 540 chain 15214 chr4 191154276 + 73543305 73543473 L1P2 5180 + 1615 1783 140732 168 chain 480042 chr4 191154276 + 73545058 73551448 L1PA6 6164 + 0 6162 7729 34 0 1 263 0 8 7 20 11 71 15 16 5 1 0 33 33 26 92 9 86 71 0 1 62 1 18 578 0 4 465 0 1 68 0 1 264 15 2 133 35 14 419 8 11 331 6 0 93 0 2 49 6 10 702 0 1 196 0 1 939 11 4 29 0 3 141 0 1 48 1 5 173 302 0 173 0 1 37 6 7 276 0 10 159 4 0 6 chain 14877 chr4 191154276 + 73552268 73552463 L1P3 4156 + 2452 2647 141010 175 2 3 9 1 0 8 chain 22789 chr4 191154276 + 73552463 73552761 L1P2 5180 - 3007 3417 114805 18 0 3 131 17 122 48 0 4 84 chain 39386 chr4 191154276 + 73552761 73553206 L1P1 4361 - 1597 2042 70188 445 chain 11705 chr4 191154276 + 73553219 73553357 L1PA5 6144 + 5245 5383 153445 41 0 1 4 1 0 92 chain 62899 chr4 191154276 + 73553358 73554097 L1PA5 6144 + 5383 6123 51490 606 0 7 1 7 0 15 0 1 110 chain 180923 chr4 191154276 + 73558500 73560513 L1PA4 6152 - 18 2024 20907 123 7 0 1883 chain 80115 chr4 191154276 + 73560513 73561426 L1PA4 6152 + 3198 4114 43325 798 0 3 115 chain 3960 chr4 191154276 + 73566463 73566628 MLT1A 405 + 214 405 207981 18 37 62 12 11 12 19 1 0 9 32 33 26 chain 525470 chr4 191154276 + 73596099 73602450 L1PA5 6144 + 3 6132 4632 173 7 2 2549 0 1 430 197 0 96 0 5 1081 0 4 950 0 5 196 62 24 414 0 1 46 2 5 21 1 0 126 chain 15839 chr4 191154276 + 73599259 73599455 L1PA5 6144 + 3158 3362 138608 52 0 4 40 0 5 100 1 0 3 chain 111264 chr4 191154276 + 73611054 73612469 L1PA8 5853 - 1 1411 33874 92 1 0 18 1 0 46 20 18 69 2 0 47 1 0 545 6 8 285 1 0 4 11 12 266 chain 17075 chr4 191154276 + 73625909 73626266 MSTD 398 + 44 396 135392 95 4 24 52 104 78 25 6 7 71 chain 103229 chr4 191154276 + 73631433 73632768 LTR12C 1709 + 0 1709 35943 338 0 43 83 8 9 19 1 0 114 1 0 4 1 2 38 0 278 143 0 47 106 0 4 397 1 0 38 0 3 43 chain 20390 chr4 191154276 + 73641479 73641722 L1PREC2 3366 - 1511 1754 125931 243 chain 105489 chr4 191154276 + 73664141 73665411 L1PA6 6164 - 2628 3900 35376 5 2 0 205 0 1 137 5 6 857 0 2 59 chain 14408 chr4 191154276 + 73665412 73665584 L1PA6 6164 + 3529 3702 143186 128 0 1 44 chain 205354 chr4 191154276 + 73665584 73668029 L1PA6 6164 + 3703 6160 18834 1080 0 6 633 0 1 561 2 4 15 7 9 107 6 7 34 chain 28993 chr4 191154276 + 73668069 73668459 THE1D-int 1627 - 1235 1627 89025 30 7 8 74 1 3 265 2 1 11 chain 25825 chr4 191154276 + 73678896 73679185 L1PA4 6152 + 5778 6067 100770 289 chain 84087 chr4 191154276 + 73689661 73690760 L1PA7 6471 - 8 1127 41862 142 6 0 7 9 16 137 20 25 430 4 6 76 0 3 218 9 19 21 2 1 18 chain 250058 chr4 191154276 + 73690761 73699018 L1PA7 6471 + 3144 6298 16251 383 0 2 294 37 6 448 0 2 41 0 2 287 0 1 131 5077 0 148 0 1 19 1 0 210 8 0 74 0 4 424 1 0 89 1 0 427 20 24 137 chain 45087 chr4 191154276 + 73692385 73692939 L1PA7 6471 + 4785 5355 62954 299 1 2 245 0 15 9 chain 5759 chr4 191154276 + 73696006 73696180 L1PA7 6471 + 3313 3491 187558 30 77 81 67 chain 17154 chr4 191154276 + 73696241 73696466 L1PA7 6471 + 3491 3724 135155 82 2 1 5 0 9 136 chain 39928 chr4 191154276 + 73696479 73696999 L1PA7 6471 + 3748 4274 69426 88 1 0 211 2 1 131 10 17 61 0 1 16 chain 32681 chr4 191154276 + 73696999 73697387 L1PA7 6471 + 4276 4665 79717 333 0 1 55 chain 514716 chr4 191154276 + 73701221 73707379 L1PA5 6144 - 0 6141 5699 339 1 0 510 0 4 243 0 1 41 0 1 49 0 1 358 29 5 642 19 4 453 1 2 315 0 1 603 1 2 235 0 2 502 6 7 376 7 6 27 1 6 58 0 6 336 1 0 708 1 2 296 chain 420837 chr4 191154276 + 73713385 73718606 L1PA6 6164 + 0 6162 9518 195 0 1 313 2 1 36 0 891 291 0 2 599 2 0 222 0 1 281 0 1 104 0 1 257 0 1 161 0 1 147 1 5 11 0 1 223 0 1 469 0 2 336 0 30 708 0 4 94 1 3 433 0 1 175 0 5 7 11 6 142 chain 299955 chr4 191154276 + 73718819 73722636 L1PA7 6471 + 2634 6465 13426 72 0 4 774 3 2 43 2 1 227 0 1 478 9 10 331 0 1 31 0 1 226 0 1 445 1 2 50 1 0 11 1 0 43 0 2 153 1 3 70 1 4 339 0 1 177 0 1 275 24 23 29 chain 11242 chr4 191154276 + 73732041 73732212 THE1C 375 + 148 316 155253 51 19 16 101 chain 82932 chr4 191154276 + 73732977 73734039 MER11A 1151 - 14 1150 42365 46 7 6 90 0 1 88 15 72 87 0 4 183 1 0 171 0 1 59 0 2 22 0 11 116 8 0 91 0 8 78 chain 449823 chr4 191154276 + 73734039 73739711 L1PA7 6471 + 754 6458 8772 92 14 14 872 0 1 296 2 0 131 0 5 87 12 29 239 0 2 117 26 3 135 0 4 252 1 0 402 1 2 95 0 2 15 3 7 55 0 1 29 0 1 26 3 0 163 12 13 51 9 4 108 0 3 54 0 3 222 0 13 119 0 1 63 0 1 39 0 4 530 0 3 24 0 1 85 0 1 40 0 1 279 32 28 100 1 0 246 0 1 263 1 0 189 0 1 137 chain 17160 chr4 191154276 + 73743263 73743539 LTR12C 1709 + 769 1034 135141 68 1 0 70 4 2 44 50 1 15 0 41 24 chain 511303 chr4 191154276 + 73744505 73750583 L1PA5 6144 - 12 6144 6041 138 13 13 411 0 2 274 0 1 767 0 1 849 0 6 236 0 1 487 0 3 235 0 1 81 7 19 186 0 1 101 7 6 680 6 4 434 1 2 52 6 19 101 0 1 882 5 19 119 chain 4780 chr4 191154276 + 73754762 73754858 L1MA8 2339 + 2119 2209 197572 12 2 1 23 4 5 36 6 0 13 chain 66470 chr4 191154276 + 73756127 73756976 L1PA8 5853 - 4 844 49885 89 1 0 19 2 1 52 1 0 9 2 1 70 2 0 46 1 0 47 6 0 343 9 10 67 0 1 16 0 2 67 chain 10287 chr4 191154276 + 73763171 73764338 LTR9B 643 - 18 582 159197 18 20 19 61 1 8 10 10 17 21 960 344 66 chain 218486 chr4 191154276 + 73771673 73774133 L1PA4 6152 - 6 2477 17971 190 0 1 649 0 5 160 1 2 1174 1 4 281 0 1 4 chain 11507 chr4 191154276 + 73774133 73774258 L1PA4 6152 + 3564 3689 154263 125 chain 27936 chr4 191154276 + 73778189 73778550 THE1A 353 + 0 353 93216 107 2 1 64 7 0 181 chain 116462 chr4 191154276 + 73778550 73780066 THE1A-int 1579 + 0 1574 32291 159 10 13 13 6 48 128 3 0 151 2 0 100 2 5 23 1 0 4 0 1 57 0 1 170 2 4 50 4 0 8 1 12 47 1 5 308 0 1 266 chain 27037 chr4 191154276 + 73780071 73780421 THE1A 353 + 0 353 96154 110 2 1 208 0 4 30 chain 65433 chr4 191154276 + 73791292 73792140 LTR17 781 - 0 781 50365 308 74 7 139 1 0 173 0 1 153 chain 286784 chr4 191154276 + 73793856 73797425 HERV17-int 4347 - 955 4335 14237 178 5 9 644 13 14 919 1 0 155 1 2 725 2 3 89 1 0 32 7 8 318 1 0 4 6 4 36 8 3 110 1 0 26 184 0 37 1 0 49 1 0 15 chain 6816 chr4 191154276 + 73797140 73797241 HERV17-int 4347 - 4234 4334 178832 25 0 1 9 1 0 51 2 1 13 chain 4705 chr4 191154276 + 73797241 73797293 HERV17-int 4347 - 4156 4208 197418 52 chain 2257 chr4 191154276 + 73797294 73797320 HERV17-int 4347 - 4208 4234 235896 26 chain 61352 chr4 191154276 + 73798143 73798903 LTR17 781 - 0 781 52172 40 3 25 389 1 0 192 0 9 7 10 1 118 chain 42904 chr4 191154276 + 73815449 73816295 L1PB1 5432 - 57 730 65534 5 1 0 24 2 0 14 1 0 5 3 1 18 22 12 15 1 0 35 14 13 12 2 1 52 2 0 6 8 4 14 1 0 6 1 0 22 147 0 11 1 2 88 0 2 15 9 7 289 chain 25777 chr4 191154276 + 73830540 73830883 THE1B 368 + 0 356 100976 18 0 1 4 1 0 21 0 15 111 1 0 20 4 2 44 0 1 119 chain 7033 chr4 191154276 + 73837161 73837270 MER58B 340 + 66 177 177237 33 0 1 4 1 0 25 6 8 40 chain 58431 chr4 191154276 + 73892589 73893238 L1PA5 6144 + 4794 5446 53728 598 0 3 51 chain 28802 chr4 191154276 + 73893256 73893572 L1PA5 6144 + 5461 5777 89891 316 chain 22643 chr4 191154276 + 73893572 73893830 L1PA5 6144 + 5886 6143 116084 114 1 0 143 chain 3229 chr4 191154276 + 73902979 73903013 LTR77 607 + 534 568 220433 34 chain 25729 chr4 191154276 + 73917026 73917301 AluYd8 298 - 0 274 101174 141 1 0 133 chain 32590 chr4 191154276 + 73918885 73919294 LTR71A 459 + 0 408 79869 198 3 4 8 2 0 198 chain 5855 chr4 191154276 + 73969564 73969631 HY4 93 - 9 76 186635 67 chain 2546 chr4 191154276 + 74016166 74016226 MIRb 242 - 59 125 232516 25 21 27 14 chain 23733 chr4 191154276 + 74025927 74026220 AluSp 311 - 4 297 111868 179 7 6 81 0 1 26 chain 5745 chr4 191154276 + 74039697 74039759 L1PB 1623 + 515 577 187683 62 chain 23963 chr4 191154276 + 74069797 74070104 AluY 311 + 3 311 110549 54 0 1 33 0 1 39 3 0 149 0 2 29 chain 5131 chr4 191154276 + 74083175 74083233 Tigger4b 360 + 0 58 193776 58 chain 45458 chr4 191154276 + 74094503 74095010 L1PA5 6144 + 5637 6144 62539 507 chain 3844 chr4 191154276 + 74111009 74111051 MLT1E3 631 + 84 126 209736 42 chain 23097 chr4 191154276 + 74126937 74127219 AluSp 311 - 19 302 115157 247 3 4 32 chain 39816 chr4 191154276 + 74142924 74143489 L1PA16 3655 - 67 628 69600 10 3 0 166 3 4 120 2 0 83 6 5 67 1 0 4 6 8 94 chain 60176 chr4 191154276 + 74155053 74155797 L1PA7 6471 - 7 758 52739 98 0 6 329 2 1 134 0 2 181 chain 482159 chr4 191154276 + 74185133 74191029 L1PA5 6144 + 0 6132 7652 458 0 13 124 11 0 369 0 6 75 0 1 398 314 8 1300 0 528 1060 0 4 687 0 1 1100 chain 48729 chr4 191154276 + 74191571 74192195 LTR12_ 688 + 0 688 59930 80 0 66 21 2 1 345 1 0 175 chain 32747 chr4 191154276 + 74204697 74205071 THE1A-int 1579 - 0 374 79617 374 chain 17289 chr4 191154276 + 74206015 74206221 L1P3 4156 - 3950 4156 134804 206 chain 41195 chr4 191154276 + 74222862 74223364 MER9a3 513 + 1 507 67651 17 0 2 90 0 1 300 1 0 43 0 2 51 chain 40687 chr4 191154276 + 74224692 74225854 HERVK9-int 4720 + 36 1199 10825 13 8 5 4 1 0 66 1 0 7 2 1 30 1 0 15 0 1 53 2 3 523 0 1 128 0 3 100 8 9 196 0 1 4 chain 527089 chr4 191154276 + 74225872 74231960 L1PA5 6144 + 3 6143 4494 1030 2 1 230 0 25 78 0 1 945 2 1 674 0 1 791 1 2 281 1 14 806 0 1 407 0 4 515 0 1 166 13 20 146 chain 122656 chr4 191154276 + 74231976 74235479 HERVK9-int 4720 + 1200 4720 10825 571 0 1 180 3 4 177 0 6 1004 0 1 152 5 4 9 2 0 172 0 1 16 0 2 765 0 3 291 0 1 44 4 8 108 chain 40531 chr4 191154276 + 74235479 74235989 MER9a3 513 + 0 513 68548 18 0 2 90 1 2 146 1 0 175 2 3 77 chain 96968 chr4 191154276 + 74255275 74256473 L1PA7 6471 - 1 1218 37570 4 1 0 7 2 0 327 0 1 426 6 9 51 0 1 70 0 1 291 1 17 12 chain 100361 chr4 191154276 + 74287236 74288817 L1PB1 5432 + 3953 5400 36668 81 0 15 83 5 0 127 0 1 120 1 0 55 0 1 60 7 2 44 5 4 63 0 4 16 0 1 73 0 2 99 1 0 119 7 8 168 136 8 7 2 0 24 1 0 9 1 0 9 6 2 11 3 1 48 2 1 17 1 0 44 1 0 16 1 17 14 8 5 14 16 0 24 1 0 21 1 0 9 chain 2916 chr4 191154276 + 74315376 74315408 U2 167 + 0 32 226739 32 chain 22410 chr4 191154276 + 74325326 74325576 L1PA5 6144 + 5613 5863 118438 250 chain 11867 chr4 191154276 + 74355457 74355708 L1PA8 5853 + 5610 5853 152753 65 65 66 15 7 6 68 8 0 23 chain 3337 chr4 191154276 + 74367079 74367153 L1MA4 2864 - 30 96 218283 17 23 15 34 chain 5226 chr4 191154276 + 74381278 74381495 L1MA3 4352 - 2840 3053 192762 49 139 135 29 chain 23730 chr4 191154276 + 74388654 74389143 L1M1 2793 - 1672 2132 111881 114 14 13 91 22 19 45 1 0 8 2 0 29 2 1 25 95 74 41 chain 256989 chr4 191154276 + 74409873 74413232 L1P3 4156 + 0 3379 15884 46 1 2 203 2 1 68 2 1 47 0 1 32 2 0 68 1 2 247 10 31 29 2 1 75 2 1 52 2 0 125 1 4 38 7 8 165 7 1 291 1 6 14 14 8 381 0 1 214 1 2 471 6 7 243 0 4 74 5 4 131 0 2 232 1 0 46 chain 554230 chr4 191154276 + 74416354 74422503 L1PA3long 6157 + 6 6157 919 1059 0 1 499 0 2 759 1 0 2903 1 0 4 0 1 923 chain 21261 chr4 191154276 + 74423134 74423421 L1PA7 6471 + 6182 6470 122987 71 0 1 64 5 6 90 1 0 4 0 1 47 1 0 4 chain 3483 chr4 191154276 + 74424950 74424991 U3 216 + 0 41 215622 41 chain 11942 chr4 191154276 + 74432647 74432772 AluYd8 298 - 0 125 152435 125 chain 106432 chr4 191154276 + 74445591 74446745 L1PA3long 6157 - 0 1154 35145 1154 chain 14804 chr4 191154276 + 74451553 74451713 L1PA3long 6157 - 0 161 141924 33 0 1 127 chain 40716 chr4 191154276 + 74461871 74462481 L1PA13 3608 + 2887 3497 68282 212 12 25 4 1 0 33 1 0 113 2 0 59 3 2 55 7 6 26 0 1 21 9 5 16 2 1 26 3 0 5 chain 50794 chr4 191154276 + 74494488 74495109 L1PA8A 6298 - 7 626 58438 268 0 1 11 3 1 4 1 0 334 chain 3225 chr4 191154276 + 74506216 74506256 L1MA3 4352 - 689 729 220506 40 chain 73302 chr4 191154276 + 74531172 74532162 LTR13 1007 - 0 1007 46883 31 22 20 138 4 5 102 1 5 14 0 12 51 2 1 94 0 4 140 8 9 298 0 3 6 6 1 73 chain 73965 chr4 191154276 + 74536581 74537574 LTR13 1007 - 0 1007 46534 24 10 8 157 4 5 103 0 4 8 0 12 57 2 1 129 0 1 47 2 0 5 1 3 53 8 9 298 0 3 6 3 0 3 2 0 71 chain 58353 chr4 191154276 + 74556806 74557457 L1PA5 6144 + 5493 6143 53774 398 1 0 252 chain 24588 chr4 191154276 + 74603094 74603381 AluYk4 311 - 25 311 107049 10 1 0 276 chain 4463 chr4 191154276 + 74609018 74609072 MER53 195 - 26 80 201192 54 chain 195830 chr4 191154276 + 74610323 74612474 L1PA3long 6157 - 0 2153 19512 845 0 1 99 0 1 1207 chain 87775 chr4 191154276 + 74639284 74640286 LTR13 1007 - 0 1007 40456 302 3 1 399 1 0 190 0 8 107 chain 6065 chr4 191154276 + 74654794 74654874 L1MB3 1562 + 1280 1359 184702 72 1 0 7 chain 56757 chr4 191154276 + 74658201 74658881 L1PA7 6471 - 3653 4320 54578 177 13 0 490 chain 291522 chr4 191154276 + 74658881 74662517 L1PA7 6471 + 2816 6465 13929 284 3 0 60 0 10 216 0 4 209 0 2 310 1 3 85 6 0 394 1 2 274 5 13 267 4 0 643 1 2 27 1 0 5 1 2 82 2 0 204 0 1 217 1 2 263 0 2 5 6 4 51 2 0 6 chain 181494 chr4 191154276 + 74699908 74702043 L1PA3long 6157 - 0 2020 20846 796 0 5 292 1 0 814 120 1 112 chain 181995 chr4 191154276 + 74770595 74772601 L1PA3long 6157 - 0 2008 20785 779 1 0 923 0 3 303 chain 95560 chr4 191154276 + 74775043 74776124 L1PA4 6152 + 5058 6143 37942 776 0 1 69 2 5 234 chain 30040 chr4 191154276 + 74787614 74787930 AluYb8 318 - 2 318 84685 316 chain 9476 chr4 191154276 + 74791431 74791558 L1PA13 3608 + 547 672 163188 84 2 0 41 chain 42297 chr4 191154276 + 74815128 74815743 HERVK11-int 2540 - 772 1343 66274 33 24 19 111 0 3 313 21 1 34 12 1 25 1 0 13 10 0 18 chain 86487 chr4 191154276 + 74818861 74819929 MER11B 1079 - 0 1077 40975 29 9 8 270 0 2 407 0 5 299 1 4 53 chain 97315 chr4 191154276 + 74822394 74823514 L1PA4 6152 - 9 1133 37383 104 0 1 140 1 0 596 0 4 279 chain 119027 chr4 191154276 + 74823514 74824886 L1PA4 6152 + 3664 5043 31397 24 0 1 288 4 5 372 0 4 129 0 1 555 chain 4555 chr4 191154276 + 74832788 74832840 MER41D 557 + 65 117 200172 52 chain 118326 chr4 191154276 + 74867452 74868778 L1PA5 6144 - 5 1331 31680 941 0 1 153 1 0 231 chain 42408 chr4 191154276 + 74868778 74869266 L1PA5 6144 + 4338 4828 66019 142 0 1 119 0 1 227 chain 23738 chr4 191154276 + 74888236 74888549 AluSc5 308 - 12 308 111846 169 21 4 123 chain 14440 chr4 191154276 + 74888787 74888979 L1PA8 5853 + 5658 5847 143078 19 3 2 14 1 0 69 1 0 85 chain 83808 chr4 191154276 + 74915416 74916397 L1PA6 6164 + 5191 6162 41983 124 1 0 412 2 0 90 3 0 339 4 0 6 chain 43800 chr4 191154276 + 74935265 74935777 MER9a3 513 - 0 513 64449 495 1 2 16 chain 43670 chr4 191154276 + 74946088 74946612 L1PA7 6471 + 5932 6461 64604 93 0 5 245 3 2 4 1 0 38 0 2 140 chain 33317 chr4 191154276 + 74958849 74959296 MER41C 542 + 56 506 78710 258 3 0 5 4 8 157 3 5 17 chain 190895 chr4 191154276 + 74984437 74987316 Charlie3 2679 + 19 2537 19963 15 3 2 190 4 5 186 58 0 169 0 2 47 0 1 108 311 3 142 6 9 34 4 1 65 5 0 153 0 1 109 2 5 41 0 1 372 0 1 179 0 22 7 22 0 107 0 1 540 chain 286608 chr4 191154276 + 74994913 74998467 L1PA7 6471 + 2909 6467 14252 147 0 1 140 19 29 277 0 3 2 4 0 14 2 1 486 1 0 244 4 5 332 5 4 172 0 1 36 0 2 109 0 1 271 0 2 431 12 9 65 2 1 8 3 1 4 1 0 234 0 1 89 2 3 427 5 0 6 chain 9177 chr4 191154276 + 75010998 75011112 MER2 342 + 147 262 164667 31 0 1 83 chain 2361 chr4 191154276 + 75013364 75013399 L1MB2 1706 - 598 634 234690 20 1 2 14 chain 19349 chr4 191154276 + 75018238 75018509 L1PA8 5853 - 0 266 129073 93 1 0 19 2 1 61 2 1 70 2 0 21 chain 36874 chr4 191154276 + 75036440 75036855 L1PA4 6152 + 5736 6151 73690 415 chain 519246 chr4 191154276 + 75074929 75081371 L1PA7 6471 - 19 6470 5235 155 2 0 533 1 0 161 0 4 79 0 1 33 0 1 284 6 5 4 1 0 206 0 1 4 1 0 17 4 9 206 0 1 70 9 13 250 1 0 576 4 3 304 0 3 6 17 4 33 0 2 679 0 1 172 2 0 231 1 0 324 8 0 260 1 0 603 0 4 325 0 2 56 0 1 108 0 11 78 1 0 8 1 0 5 14 9 84 4 5 49 2 9 197 37 37 225 chain 92121 chr4 191154276 + 75104072 75105215 L1PA6 6164 + 5012 6162 38928 21 0 1 133 0 5 140 0 4 221 14 17 450 7 6 31 3 1 112 3 0 8 chain 428704 chr4 191154276 + 75111204 75115930 L1PA3long 6157 - 8 4737 9339 4020 0 1 411 0 1 103 0 1 192 chain 155568 chr4 191154276 + 75135894 75137648 L1PA5 6144 - 6 1761 23913 107 1 0 911 0 1 422 0 1 313 chain 25853 chr4 191154276 + 75150086 75150395 L1PA5 6144 - 688 994 100636 162 4 0 69 0 1 74 chain 56885 chr4 191154276 + 75150395 75151056 L1PA5 6144 + 5468 6132 54610 59 0 4 464 1 0 137 chain 21711 chr4 191154276 + 75158765 75159055 L1PA7 6471 - 5 293 121344 5 3 0 129 18 19 135 chain 34920 chr4 191154276 + 75189461 75189951 MER41E 591 + 1 500 76310 170 0 3 121 9 10 78 21 26 91 chain 33399 chr4 191154276 + 75196173 75196652 LTR15 485 + 0 475 78566 113 0 1 10 4 0 25 1 3 125 0 4 115 2 1 45 24 18 15 chain 129394 chr4 191154276 + 75206258 75207814 L1PA7 6471 - 237 1779 28226 614 2 0 671 1 0 7 19 8 242 chain 14651 chr4 191154276 + 75207816 75207983 L1PA7 6471 + 6272 6439 142421 167 chain 30137 chr4 191154276 + 75214889 75215230 L1PA2 6032 + 5689 6031 84359 185 0 1 156 chain 28026 chr4 191154276 + 75229210 75229506 AluYg6 310 - 14 310 92908 296 chain 18818 chr4 191154276 + 75259698 75259927 L1PA4 6152 + 5920 6146 130617 76 0 7 1 7 0 137 3 0 5 chain 99996 chr4 191154276 + 75264062 75265343 LTR12C 1709 - 0 1709 36781 63 0 4 15 1 0 86 0 102 211 18 11 79 0 47 162 0 280 44 0 1 342 1 2 63 6 7 190 chain 493046 chr4 191154276 + 75371047 75377191 L1PA6 6164 + 0 6159 7220 277 0 1 171 8 0 74 11 12 13 5 6 6 1 0 9 1 0 143 14 13 62 0 17 941 0 4 576 13 0 44 0 1 29 0 4 108 4 5 130 7 0 532 2 0 11 0 1 26 0 1 23 5 9 30 0 2 415 1 0 267 0 1 70 4 5 176 4 8 424 2 0 665 1 5 131 0 3 708 chain 9572 chr4 191154276 + 75408269 75408513 L1MA5A 2387 - 28 218 162729 19 1 0 4 7 6 13 30 11 11 1 0 7 0 1 53 30 2 14 3 0 33 2 0 16 chain 3662 chr4 191154276 + 75503999 75504044 MLT1D 503 - 0 45 212536 45 chain 4128 chr4 191154276 + 75513682 75513771 MER58A 224 - 106 196 205543 12 27 28 50 chain 58906 chr4 191154276 + 75518531 75519188 L1PA4 6152 - 16 671 53451 223 2 0 432 chain 2770 chr4 191154276 + 75520066 75520098 L1ME3A 1206 - 208 240 229194 32 chain 109984 chr4 191154276 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chain 22957 chr4 191154276 + 76178209 76178484 L1PA4 6152 - 12 286 115817 242 1 0 32 chain 402098 chr4 191154276 + 76185767 76191496 L1PB1 5432 + 19 5404 10025 27 64 65 451 7 8 759 0 1 63 1 0 16 9 5 94 323 1 154 0 3 145 8 7 680 4 0 59 0 5 13 1 0 313 0 1 41 0 4 349 2 4 222 0 3 10 0 2 136 2 0 65 3 0 237 6 5 484 0 6 141 24 23 5 2 0 80 3 2 141 0 1 253 1 2 9 3 0 20 1 0 13 16 11 9 2 0 50 9 7 13 2 1 43 1 0 14 1 0 5 17 8 15 32 27 16 5 4 21 1 0 13 chain 10928 chr4 191154276 + 76194077 76194236 MER20 218 + 43 206 156492 34 8 13 67 1 0 49 chain 45901 chr4 191154276 + 76194496 76195773 L1PA7 6471 + 964 2267 9503 30 6 28 188 0 4 45 0 1 877 1 0 130 chain 549653 chr4 191154276 + 76195789 76201817 L1PA2 6032 - 0 6032 1499 13 0 1 2885 0 1 528 0 1 2065 0 1 537 chain 158156 chr4 191154276 + 76201817 76206217 L1PA7 6471 + 2268 6461 9503 366 1 2 200 1 0 151 45 0 4 168 0 107 2 1 113 1 0 272 11 11 354 1 2 149 1 0 98 0 1 301 28 26 183 0 1 301 7 8 107 7 15 451 0 1 123 16 15 70 2 1 759 chain 2737 chr4 191154276 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76242985 76243683 SVA_B 1603 + 903 1603 53965 24 0 1 13 21 22 13 1 0 34 1 0 260 0 1 55 0 1 276 chain 500353 chr4 191154276 + 76256213 76262897 L1PA7 6471 + 0 6467 6815 189 0 1 213 0 2 61 1 0 232 19 17 130 3 4 909 0 1 89 1 2 146 0 87 57 1 2 12 14 21 341 314 6 110 5 0 54 0 1 146 0 2 929 4 7 238 1 0 98 1 4 158 3 0 49 0 2 665 8 6 228 23 6 210 6 4 104 1 2 80 1 4 24 0 1 39 3 7 108 0 6 493 16 16 135 3 0 9 chain 65669 chr4 191154276 + 76266920 76267696 L1PA6 6164 - 12 791 50257 188 6 9 582 chain 87140 chr4 191154276 + 76276377 76277614 L1PA8A 6298 - 7 1174 40718 42 2 7 58 0 3 221 1 0 475 2 1 120 0 1 49 0 1 4 1 0 100 0 3 6 98 18 58 chain 5831 chr4 191154276 + 76277482 76277553 L1PA8A 6298 - 66 137 186860 71 chain 3392 chr4 191154276 + 76279989 76280037 L1MA4 2864 + 2758 2804 217252 8 2 0 38 chain 15348 chr4 191154276 + 76280077 76280253 L1PA5 6144 + 5968 6144 140344 176 chain 8233 chr4 191154276 + 76282552 76282643 L1PA4 6152 + 6060 6151 169761 91 chain 74753 chr4 191154276 + 76291377 76292189 L1PA4 6152 + 5340 6152 46134 812 chain 4190 chr4 191154276 + 76293080 76293322 MLT1A0 366 + 78 342 204704 28 172 179 28 0 15 14 chain 43514 chr4 191154276 + 76297535 76298039 L1PA7 6471 + 5966 6470 64793 504 chain 81258 chr4 191154276 + 76299339 76300418 MER41-int 2638 + 1541 2636 43062 241 0 1 119 0 1 10 1 0 4 2 4 254 0 7 156 9 10 28 1 2 43 2 0 24 6 12 179 chain 44805 chr4 191154276 + 76300427 76300984 MER41A 554 + 0 554 63285 526 3 0 28 chain 435263 chr4 191154276 + 76303444 76309381 L1PA3long 6157 + 8 6157 9189 105 14 29 341 1 0 25 3 0 11 14 15 27 30 31 117 5 12 91 50 33 101 1 0 2 0 116 90 118 109 772 0 1 283 1 0 176 8 9 55 0 1 528 8 12 71 0 1 17 9 8 318 1 0 1017 5 6 83 0 4 407 6 7 265 0 4 515 3 4 106 0 84 27 0 1 102 0 2 8 chain 329769 chr4 191154276 + 76312975 76316807 L1PA2 6032 - 3 3834 12212 5 2 0 253 11 12 586 0 1 45 1 0 2929 chain 547732 chr4 191154276 + 76326404 76332436 L1PA2 6032 + 0 6032 1735 257 1 0 2103 0 1 172 9 8 1971 0 1 1519 chain 436155 chr4 191154276 + 76341078 76346583 L1PA7 6471 - 1 6452 9161 626 5 7 216 2 1 532 0 11 74 59 11 45 53 7 161 16 58 49 0 4 446 0 1 377 0 984 228 2 1 201 11 11 552 0 1 265 0 1 53 4 0 266 0 1 191 33 31 463 0 1 575 chain 25174 chr4 191154276 + 76349924 76350303 THE1B 368 - 0 368 103886 176 27 20 103 7 0 7 1 0 4 0 1 11 5 10 21 2 0 15 chain 4177 chr4 191154276 + 76353843 76353890 MSTB 430 + 0 47 204867 47 chain 370097 chr4 191154276 + 76361357 76366781 L1PB1 5432 + 20 5422 11093 6 6 0 213 77 80 12 4 7 55 2 1 60 15 14 294 1 0 11 0 1 249 5 1 7 0 4 188 17 18 146 18 23 19 0 31 189 0 3 16 37 16 133 2 0 7 0 3 18 0 1 104 4 5 14 0 3 101 1 3 421 4 0 79 1 6 246 1 4 4 1 0 80 0 8 184 0 7 176 9 10 39 0 4 203 18 15 68 1 0 79 0 1 280 1 0 371 0 1 112 4 9 70 10 12 59 3 0 88 1 0 343 5 7 32 63 23 21 0 2 7 5 0 9 2 0 3 2 0 9 2 0 48 7 6 14 1 0 45 1 0 15 50 36 16 2 0 22 1 0 21 1 0 13 5 4 10 1 0 4 chain 551464 chr4 191154276 + 76367746 76373762 L1PA2 6032 - 4 6020 1256 1520 1 2 4250 1 0 244 chain 5251 chr4 191154276 + 76373792 76373854 Tigger5 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76449040 76449337 L1MA3 4352 - 1179 1476 112931 297 chain 24365 chr4 191154276 + 76456807 76457181 THE1B 368 - 11 362 108292 158 1 3 28 19 5 68 19 5 48 0 5 24 2 0 7 chain 121422 chr4 191154276 + 76457197 76458755 THE1B-int 1605 - 11 1605 30556 191 1 2 29 0 1 80 0 1 253 0 1 127 0 3 397 0 1 4 8 9 30 8 33 416 2 4 12 chain 15621 chr4 191154276 + 76458755 76458947 THE1B 368 - 0 194 139518 169 1 3 22 chain 40395 chr4 191154276 + 76458975 76459432 L1PA5 6144 - 2 460 68744 145 0 1 312 chain 78291 chr4 191154276 + 76459432 76460316 L1PA5 6144 + 4793 5688 44377 504 0 4 82 1 0 137 0 8 160 chain 25809 chr4 191154276 + 76486146 76486454 AluY 311 + 0 303 100830 16 0 1 105 10 4 177 chain 24988 chr4 191154276 + 76487546 76487828 AluSp 311 - 9 290 104867 174 1 0 107 chain 25115 chr4 191154276 + 76512837 76513133 AluY 311 + 0 302 104197 22 0 6 274 chain 29359 chr4 191154276 + 76514479 76514787 AluYa5 310 - 2 310 87246 308 chain 29682 chr4 191154276 + 76528167 76528483 AluYb9 318 - 3 318 85898 197 1 0 118 chain 25880 chr4 191154276 + 76543423 76543737 AluSp 311 - 0 311 100529 98 11 8 205 chain 23171 chr4 191154276 + 76566350 76566656 AluSc8 310 + 1 306 114811 51 21 15 38 0 2 19 0 3 177 chain 6815 chr4 191154276 + 76587313 76587388 HY4 93 - 9 84 178834 75 chain 6744 chr4 191154276 + 76607053 76607130 MER44B 551 - 187 264 179369 77 chain 7775 chr4 191154276 + 76613244 76613346 LTR32 486 + 350 451 172447 59 1 0 42 chain 23355 chr4 191154276 + 76632529 76632804 AluYc3 301 + 6 288 113904 107 1 2 150 0 6 17 chain 24840 chr4 191154276 + 76645417 76645702 AluYc 301 + 1 288 105677 113 0 2 172 chain 33661 chr4 191154276 + 76659437 76659902 L1PA16 3655 - 1017 1498 78152 157 9 0 10 0 9 59 17 31 103 0 2 110 chain 9481 chr4 191154276 + 76699691 76699994 L1MC2 1988 + 1609 1896 163155 30 17 13 19 1 0 7 40 37 45 46 47 40 23 19 6 5 0 24 chain 6914 chr4 191154276 + 76711137 76711211 L1PA2 6032 + 5956 6030 178081 74 chain 3762 chr4 191154276 + 76714296 76714337 Tigger4b 360 + 318 359 210942 41 chain 9111 chr4 191154276 + 76748694 76748846 AluJo 314 + 111 264 165007 5 1 0 18 25 27 103 chain 4417 chr4 191154276 + 76750690 76750738 U2 167 - 119 167 201710 48 chain 3695 chr4 191154276 + 76752963 76753012 MLT1C 463 + 63 111 212007 23 1 0 25 chain 24921 chr4 191154276 + 76756544 76756832 AluSp 311 + 5 291 105217 106 3 1 179 chain 28178 chr4 191154276 + 76756972 76757338 MER39B 650 - 6 387 92379 49 0 1 43 9 22 105 0 1 160 chain 31306 chr4 191154276 + 76758228 76758682 MER4A 717 + 7 476 81980 114 2 0 205 0 11 17 29 30 42 4 9 41 chain 20245 chr4 191154276 + 76761620 76761876 AluSg7 307 + 0 255 126397 64 2 0 66 1 2 123 chain 17623 chr4 191154276 + 76766912 76767165 MER57F 435 - 166 435 133929 60 5 11 75 7 17 106 chain 21795 chr4 191154276 + 76771572 76771837 AluSq10 312 + 0 282 121034 180 3 20 82 chain 44989 chr4 191154276 + 76779102 76779615 MER9a2 513 - 0 513 63068 513 chain 7164 chr4 191154276 + 76780404 76780521 L1PA8 5853 - 0 102 176314 47 14 0 45 2 1 9 chain 3888 chr4 191154276 + 76782279 76782454 MER20 218 + 32 218 209049 32 21 20 5 3 0 17 57 58 14 12 26 14 chain 23298 chr4 191154276 + 76798213 76798500 AluSp 311 + 8 292 114210 59 8 5 220 chain 44951 chr4 191154276 + 76818971 76819484 MER9a2 513 - 0 513 63119 513 chain 37089 chr4 191154276 + 76831973 76832480 LTR7B 505 - 14 505 73399 201 1 3 5 2 0 33 8 26 10 39 5 208 chain 26776 chr4 191154276 + 76843553 76843936 MER39B 650 + 263 644 97063 153 9 11 112 10 7 52 1 0 46 chain 19398 chr4 191154276 + 76844443 76844687 LTR9 672 + 0 248 128953 22 0 4 222 chain 5847 chr4 191154276 + 76849174 76849368 L1MA7 2200 - 98 276 186707 19 48 33 39 34 34 28 7 6 19 chain 25156 chr4 191154276 + 76875249 76875548 AluY 311 + 0 296 103975 13 4 1 282 chain 73268 chr4 191154276 + 76875743 76876617 MER11D 897 + 0 897 46900 592 1 24 281 chain 147602 chr4 191154276 + 76883062 76884737 L1PA5 6144 - 9 1695 24939 833 0 7 368 0 1 217 0 3 257 chain 80610 chr4 191154276 + 76885812 76886845 MER11B 1079 + 0 1079 43337 104 0 8 113 0 5 86 1 18 13 0 8 210 1 0 4 2 3 198 0 2 137 9 10 96 10 16 19 1 0 29 chain 115913 chr4 191154276 + 76903960 76905316 L1PA7 6471 - 12 1375 32491 7 1 0 142 1 3 153 0 1 452 1 2 74 0 3 220 0 1 305 chain 68198 chr4 191154276 + 76929258 76930277 L1PB1 5432 + 4437 5424 49159 39 0 5 135 8 5 97 0 3 206 1 0 176 1 0 10 7 4 13 5 4 13 1 0 9 6 2 9 2 0 49 8 7 14 1 0 44 1 0 15 24 12 19 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 16 1 0 4 chain 12488 chr4 191154276 + 76937227 76937382 L1M1 2793 - 1054 1209 150299 155 chain 10378 chr4 191154276 + 76941880 76942032 AluJr 308 + 159 300 158793 123 2 0 9 9 0 9 chain 105858 chr4 191154276 + 76963684 76965003 LTR12C 1709 - 0 1709 35295 59 0 131 43 1 0 4 29 0 32 0 1 211 0 4 29 0 1 76 3 1 6 1 0 103 0 278 152 9 8 190 10 19 361 chain 400645 chr4 191154276 + 76965968 76970864 HERV9-int 5642 - 818 5642 10075 8 0 1 99 0 2 199 0 4 247 0 1 223 0 4 1855 15 33 422 14 0 354 69 69 196 84 0 197 5 1 24 0 1 89 1 0 69 0 1 387 0 1 4 1 0 267 1 0 66 chain 2653 chr4 191154276 + 76969673 76969746 HERV9-int 5642 - 4535 4608 167275 73 chain 122072 chr4 191154276 + 76970944 76972373 LTR12C 1709 - 0 1709 30358 268 0 1 212 0 4 106 3 1 5 1 0 104 0 278 152 9 8 352 0 1 217 chain 21924 chr4 191154276 + 76979937 76980397 MER57B2 428 - 0 428 120531 80 2 3 11 33 41 89 11 0 7 12 47 18 8 9 51 33 0 21 33 0 51 chain 3657 chr4 191154276 + 76991374 76991567 L1ME1 1623 - 326 533 212615 20 2 0 10 4 5 17 91 93 19 11 24 19 chain 3836 chr4 191154276 + 77014780 77014828 MLT1D 503 - 418 467 209832 41 0 1 7 chain 44483 chr4 191154276 + 77027515 77028058 LTR19B 566 - 22 566 63599 10 1 0 17 1 2 39 1 0 384 0 2 90 chain 11672 chr4 191154276 + 77071182 77071358 MER30 238 + 41 238 153588 58 10 0 9 2 30 14 0 6 41 3 0 39 chain 4349 chr4 191154276 + 77071419 77071467 MER30 238 + 190 238 202598 48 chain 81408 chr4 191154276 + 77075270 77076318 MER11C 1089 + 0 1063 43009 246 0 9 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 1 0 22 8 10 5 2 0 41 1 0 65 chain 22847 chr4 191154276 + 77088837 77089120 AluSc5 308 - 15 297 116362 13 2 0 250 0 1 18 chain 4002 chr4 191154276 + 77107025 77107094 MIR 256 + 105 175 207360 41 13 14 15 chain 26556 chr4 191154276 + 77110424 77111120 THE1C 375 - 2 375 97821 24 1 0 166 323 2 92 6 8 56 3 0 25 chain 40732 chr4 191154276 + 77147208 77147825 LTR14B 630 - 0 607 68268 196 2 0 5 76 48 10 0 20 73 0 7 10 12 5 233 chain 216281 chr4 191154276 + 77151772 77154725 MER61-int 3695 - 654 3657 18100 143 53 50 16 0 1 66 2 1 154 1 0 188 0 2 174 1 0 111 11 0 44 5 3 99 0 2 39 0 2 78 0 1 23 1 6 631 1 0 109 0 1 24 1 0 147 8 9 66 0 5 46 3 7 56 0 96 13 9 11 69 0 1 81 1 0 54 15 1 11 0 1 127 2 1 11 0 2 65 38 0 147 1 0 8 chain 32222 chr4 191154276 + 77158716 77159143 MSTA 426 - 0 426 80481 74 0 1 143 15 13 195 chain 64482 chr4 191154276 + 77164915 77165675 L1PA7 6471 - 19 783 50808 396 1 2 339 0 3 24 chain 11610 chr4 191154276 + 77185213 77185384 LTR48 738 - 558 736 153851 37 6 14 7 0 1 66 1 0 29 1 0 24 chain 80173 chr4 191154276 + 77202919 77203812 MER11D 897 - 0 897 43519 45 0 4 848 chain 444666 chr4 191154276 + 77206011 77211624 L1PA8 5853 - 0 5803 8915 50 1 0 42 2 1 19 2 1 50 14 12 68 2 0 46 1 0 52 0 1 7 0 12 23 1 0 81 0 14 365 5 1 9 0 1 500 6 7 227 1 0 308 1 0 75 12 15 173 0 7 141 2 0 6 0 2 93 19 218 150 3 7 368 0 1 103 0 1 246 11 18 54 0 4 248 13 0 117 1 3 17 0 1 289 1 0 243 0 1 687 1 0 360 41 25 31 1 2 142 32 12 10 5 4 9 4 1 22 chain 11500 chr4 191154276 + 77242964 77243253 L1PB1 5432 + 5118 5392 154299 20 1 0 5 2 1 12 19 13 50 1 0 52 69 66 9 2 0 24 1 0 22 chain 179299 chr4 191154276 + 77259689 77262056 Charlie3 2679 + 306 2671 21050 57 0 2 181 8 9 31 0 2 39 3 4 93 17 0 207 3 1 354 8 9 110 0 5 225 10 12 135 1 3 83 0 4 124 0 1 383 1 2 218 3 0 7 12 10 54 chain 173928 chr4 191154276 + 77265056 77268859 L1PA7 6471 + 4358 6459 21600 448 1386 0 249 7 8 158 1 0 54 1 6 220 293 0 120 1 0 77 0 2 90 0 1 297 38 8 363 chain 24986 chr4 191154276 + 77273285 77273584 AluSc 308 + 10 305 104878 72 4 0 223 chain 20537 chr4 191154276 + 77307442 77307793 MER51B 395 + 0 388 125523 40 7 26 32 14 22 51 2 1 38 1 0 4 0 1 12 19 18 51 1 13 79 chain 6218 chr4 191154276 + 77311561 77311641 HY4 93 + 10 93 183422 58 1 4 21 chain 258635 chr4 191154276 + 77311660 77315497 L1MA2 4263 + 298 4114 15773 13 1 0 16 8 7 61 1 0 88 1 0 193 0 1 49 0 1 4 17 16 44 0 1 177 51 6 68 10 9 147 5 6 6 1 0 86 1 0 43 4 3 93 0 13 124 3 2 87 1 0 78 2 42 44 0 3 19 27 31 4 1 0 35 10 9 43 1 0 239 28 30 18 28 10 159 3 4 109 4 3 102 3 1 17 0 1 26 0 1 218 1 2 399 5 6 107 0 3 159 4 1 70 1 0 146 3 0 113 3 0 6 53 55 79 16 10 41 1 0 9 chain 3130 chr4 191154276 + 77318223 77318260 MLT1F1 559 + 1 38 222360 37 chain 40692 chr4 191154276 + 77321256 77321719 L1PA5 6144 + 5683 6144 68306 451 2 0 10 chain 73792 chr4 191154276 + 77329350 77330184 L1PA4 6152 - 9 846 46623 104 0 1 625 0 2 105 chain 121398 chr4 191154276 + 77336038 77338628 THE1A-int 1579 + 0 1579 30566 127 0 11 81 0 2 29 41 12 287 999 0 30 0 1 300 0 3 131 0 1 15 6 5 67 0 1 74 2 1 401 chain 74807 chr4 191154276 + 77336608 77337594 LTR13 1007 + 0 999 46110 73 9 4 185 1 3 116 4 5 110 0 7 180 26 28 105 0 2 90 0 5 62 2 1 23 chain 13041 chr4 191154276 + 77338722 77338873 THE1A 353 + 198 353 148073 126 0 4 25 chain 25037 chr4 191154276 + 77339620 77339978 THE1B 368 - 0 368 104608 56 8 6 62 1 0 6 11 25 11 0 1 20 4 3 9 1 0 169 chain 136874 chr4 191154276 + 77343885 77345467 SVA_D 2077 + 27 2077 26667 9 0 2 515 0 40 297 0 396 28 0 50 24 0 1 589 16 0 93 5 0 6 chain 32760 chr4 191154276 + 77377863 77378290 LTR7B 505 - 2 505 79598 55 0 1 60 0 1 24 1 0 39 0 1 42 0 2 24 1 0 4 3 66 69 0 10 105 chain 541942 chr4 191154276 + 77398831 77405297 L1PA7 6471 + 0 6461 2516 1493 0 3 159 2 0 200 0 1 307 0 4 322 11 1 148 3 0 70 0 4 177 0 4 119 0 1 205 0 1 330 0 4 277 17 0 17 0 4 41 0 1 55 11 0 9 6 5 85 0 1 28 3 1 737 0 6 794 0 3 295 0 1 77 0 3 96 0 1 272 1 0 99 chain 47400 chr4 191154276 + 77410988 77411828 MER51A 677 - 16 677 60902 70 8 0 56 1 2 137 0 3 191 29 9 13 11 13 25 2 1 20 156 0 121 chain 2065 chr4 191154276 + 77427135 77427157 L1PA7 6471 + 6067 6089 238012 22 chain 16860 chr4 191154276 + 77427157 77427343 L1PA7 6471 + 6090 6276 135939 186 chain 15407 chr4 191154276 + 77427358 77427541 L1PA7 6471 + 6287 6470 140179 183 chain 27926 chr4 191154276 + 77453062 77453374 L1PA5 6144 - 0 312 93254 312 chain 8877 chr4 191154276 + 77453374 77453480 U6 107 - 0 107 166244 55 0 1 51 chain 41687 chr4 191154276 + 77496781 77497442 L1MA2 4263 + 2612 4047 67042 32 2 0 95 6 0 23 5 6 54 0 791 49 1 0 49 5 0 97 3 0 37 2 3 87 45 43 69 chain 4022 chr4 191154276 + 77523901 77523949 MIR 256 + 20 68 207043 48 chain 13287 chr4 191154276 + 77535639 77535834 L1PA8 5853 - 0 191 147140 92 2 1 19 2 1 50 4 3 8 1 0 17 chain 12552 chr4 191154276 + 77567231 77567370 L1PA5 6144 + 5992 6131 150034 139 chain 24163 chr4 191154276 + 77588843 77589144 AluSc8 310 + 4 309 109412 114 0 1 14 0 2 98 5 6 70 chain 6799 chr4 191154276 + 77594893 77594985 L1MB2 1706 - 34 124 178960 61 1 0 13 1 0 16 chain 20458 chr4 191154276 + 77597885 77598120 AluY 311 + 71 307 125735 61 0 1 174 chain 17561 chr4 191154276 + 77606417 77606650 MER30 238 - 0 238 134096 39 3 0 77 4 12 110 chain 25216 chr4 191154276 + 77642212 77642479 AluYa5 310 + 30 297 103656 267 chain 26369 chr4 191154276 + 77649373 77649732 THE1B 368 + 0 368 98537 39 0 15 105 1 3 10 1 0 16 8 4 79 3 0 97 chain 10566 chr4 191154276 + 77670387 77670507 L1PA4 6152 - 0 117 157970 6 3 0 111 chain 4353 chr4 191154276 + 77683188 77683241 5S 121 + 39 92 202543 53 chain 142519 chr4 191154276 + 77696132 77698889 L1PB1 5432 - 10 2097 25724 18 1 0 11 1 0 11 0 1 11 1 0 24 2 0 14 1 0 4 4 2 15 9 0 14 4 1 14 2 1 29 1 0 9 13 12 12 2 1 49 3 1 9 2 0 3 2 0 12 8 6 24 534 11 51 0 1 72 0 1 166 1 9 71 5 9 17 1 3 73 0 5 17 0 9 87 6 8 117 168 14 166 0 2 473 1 4 153 1 2 238 chain 25088 chr4 191154276 + 77728145 77728520 THE1D 372 - 0 372 104363 86 21 7 79 2 0 7 16 25 36 0 4 128 chain 151954 chr4 191154276 + 77749386 77751029 L1PA2 6032 - 0 1643 24341 1643 chain 7439 chr4 191154276 + 77775118 77775208 MADE1 96 + 0 96 174521 47 0 6 43 chain 4092 chr4 191154276 + 77788510 77788569 L1PA11 4918 + 22 79 206051 19 4 2 36 chain 68918 chr4 191154276 + 77798503 77799579 L1PB1 5432 - 8 1021 48852 4 1 0 16 1 0 13 1 0 21 1 0 22 2 0 16 8 5 19 19 8 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 13 1 0 20 41 11 4 1 0 4 0 1 473 3 0 33 5 4 31 0 3 139 chain 43167 chr4 191154276 + 77799800 77800353 MLT2A2 560 + 0 560 65213 64 8 0 335 3 14 137 0 4 6 chain 9242 chr4 191154276 + 77832238 77832460 Tigger3a 397 - 88 366 164342 70 74 145 56 15 0 7 chain 25852 chr4 191154276 + 77835964 77836345 MLT2A1 477 - 85 477 100647 7 4 0 62 2 1 45 6 5 41 15 27 31 0 4 28 0 1 140 chain 10140 chr4 191154276 + 77837060 77837216 Tigger1 2417 - 0 170 159903 37 10 27 97 3 0 9 chain 70599 chr4 191154276 + 77837253 77838067 SVA_D 2077 + 55 898 48112 103 1 31 17 5 3 508 1 2 179 chain 37814 chr4 191154276 + 77838103 77838944 SVA_F 1814 + 664 1291 72392 69 101 94 28 1 0 21 4 5 51 1 0 16 0 15 26 106 28 55 1 0 9 0 1 46 142 0 146 1 0 17 chain 9245 chr4 191154276 + 77838172 77838273 SVA_F 1814 + 966 1067 85011 101 chain 7140 chr4 191154276 + 77838421 77838499 SVA_F 1814 + 1214 1291 85011 60 1 0 17 chain 7027 chr4 191154276 + 77838638 77838720 SVA_F 1814 + 937 1038 158834 7 0 18 25 0 1 50 chain 1605 chr4 191154276 + 77838744 77838780 SVA_F 1814 + 902 937 82551 28 1 0 7 chain 4547 chr4 191154276 + 77838944 77839046 SVA_F 1814 + 1116 1219 82551 98 0 1 4 chain 84829 chr4 191154276 + 77839061 77840023 SVA_E 1901 + 923 1892 41576 21 0 49 102 1 0 33 41 0 764 chain 20698 chr4 191154276 + 77842525 77842809 Tigger1 2417 - 1906 2197 124975 4 0 1 41 5 7 165 3 7 66 chain 3047 chr4 191154276 + 77848466 77848498 LTR16E1 515 + 428 460 224087 32 chain 15283 chr4 191154276 + 77851921 77852162 MER2 342 - 24 255 140529 20 32 21 166 1 2 22 chain 10556 chr4 191154276 + 77881005 77881184 L1MA3 4352 - 0 170 158019 21 3 0 3 1 0 15 9 8 17 1 0 6 1 0 24 2 0 76 chain 34036 chr4 191154276 + 77884963 77885336 L1PA5 6144 - 5 378 77569 373 chain 15413 chr4 191154276 + 77888087 77888270 AluSz6 309 + 20 203 140158 183 chain 12556 chr4 191154276 + 77910864 77911025 Tigger3a 397 + 139 310 150019 22 0 10 139 chain 38495 chr4 191154276 + 77911032 77911553 LTR12F 595 - 7 595 71444 229 0 1 119 10 29 19 6 54 33 6 1 45 0 4 54 chain 24313 chr4 191154276 + 77951553 77951838 AluSg7 307 - 8 298 108591 32 0 4 131 0 1 122 chain 13219 chr4 191154276 + 77973276 77973447 L1PA16 3655 - 62 234 147396 15 3 0 57 0 4 96 chain 4896 chr4 191154276 + 77977659 77977718 MER50 708 - 122 181 196305 59 chain 19067 chr4 191154276 + 77990594 77990810 L1PA5 6144 - 0 216 129917 216 chain 13536 chr4 191154276 + 78006504 78006711 LTR54 533 - 305 533 146226 5 2 0 15 0 7 55 0 8 18 10 16 19 1 3 82 chain 101824 chr4 191154276 + 78007289 78008431 L1PA4 6152 - 12 1157 36307 142 3 4 270 0 2 727 chain 75332 chr4 191154276 + 78008432 78009260 L1PA4 6152 + 4174 5002 45856 828 chain 9871 chr4 191154276 + 78010113 78010228 MER50 708 - 23 138 161227 64 0 1 4 1 0 46 chain 14977 chr4 191154276 + 78026854 78027049 MER41C 542 + 11 207 141392 28 10 11 157 chain 87531 chr4 191154276 + 78051431 78052647 L1MA2 4263 - 662 1866 40557 13 21 14 628 4 7 20 16 11 139 13 10 52 2 1 61 3 1 90 0 4 17 1 0 136 chain 26599 chr4 191154276 + 78059501 78059802 AluSq10 312 + 0 300 97670 125 1 0 175 chain 2940 chr4 191154276 + 78108349 78108383 LTR33 499 + 410 444 226331 34 chain 4230 chr4 191154276 + 78140604 78140649 MADE1 96 + 1 46 204170 45 chain 11460 chr4 191154276 + 78164859 78165191 THE1B 368 - 33 350 154471 63 1 0 11 4 1 16 81 77 11 9 0 21 56 58 59 chain 38567 chr4 191154276 + 78165506 78166039 MLT2A2 560 - 8 559 71345 30 0 7 129 1 3 151 26 28 133 0 2 31 0 5 32 chain 3692 chr4 191154276 + 78178511 78178552 L1P3 4156 - 52 93 206609 41 chain 200481 chr4 191154276 + 78178552 78180878 L1PA4 6152 + 3781 6140 19172 316 0 2 249 0 4 133 0 2 151 0 5 147 0 2 477 10 14 87 5 7 16 0 3 378 0 1 42 0 3 182 0 5 133 chain 71683 chr4 191154276 + 78185027 78186096 MER11A 1151 - 8 1151 47611 68 7 9 78 6 7 35 1 0 25 0 1 30 21 4 24 43 0 3 0 26 148 0 1 69 12 16 60 0 1 40 0 3 54 0 1 111 0 2 11 0 3 19 4 0 58 0 93 33 0 2 88 1 0 20 chain 81544 chr4 191154276 + 78201492 78202687 L1PA8 5853 - 6 1238 42960 78 31 29 45 19 16 58 1 5 8 2 0 46 1 0 188 0 3 20 0 2 69 0 2 66 16 19 60 1 2 28 30 44 46 0 6 16 0 4 38 0 4 7 5 1 41 1 4 143 0 1 94 0 2 37 chain 3786 chr4 191154276 + 78203943 78203986 MER44B 551 - 233 276 210583 43 chain 487125 chr4 191154276 + 78216674 78222708 L1PA6 6164 - 5 6100 7477 68 0 10 159 0 3 496 1 4 10 0 3 20 0 1 56 1 0 7 0 4 22 1 0 185 0 2 600 0 4 137 1 9 83 0 3 300 0 2 265 0 3 192 0 4 73 1 0 28 0 3 74 11 10 128 21 0 402 0 3 179 0 1 560 0 1 188 0 4 71 0 3 51 0 1 98 1 0 183 2 1 187 2 0 69 1 0 225 0 25 429 11 10 298 7 8 130 chain 162182 chr4 191154276 + 78222779 78224873 L1P2 5180 - 3071 5178 23035 251 0 5 137 1 0 40 2 0 213 0 4 274 0 3 99 0 3 162 0 4 109 29 25 97 2 3 108 2 4 53 1 0 135 0 2 129 3 2 47 7 6 43 2 1 148 chain 4967 chr4 191154276 + 78229070 78229153 Tigger3a 397 - 142 239 195520 54 13 27 16 chain 22734 chr4 191154276 + 78236288 78236536 L1HS 6032 + 5784 6032 116899 248 chain 67381 chr4 191154276 + 78241144 78242125 MER11A 1151 - 18 1144 49494 42 9 18 133 7 6 75 7 41 15 1 0 56 0 4 53 1 0 8 9 12 111 1 0 21 3 5 44 2 0 41 13 14 45 0 1 88 14 11 132 1 101 49 chain 490038 chr4 191154276 + 78242818 78248895 L1PA5 6144 - 12 6144 7363 236 1 0 4 0 1 604 9 11 341 0 1 326 0 4 115 0 4 35 0 3 96 0 8 88 0 3 300 0 2 267 0 2 175 6 7 161 41 44 36 1 3 8 0 7 63 3 1 500 4 0 97 0 2 81 0 1 148 1 3 30 0 1 604 0 1 78 2 1 97 0 1 207 1 0 155 13 4 152 1 0 25 0 3 130 5 8 712 1 15 66 0 3 51 chain 28046 chr4 191154276 + 78248934 78249390 THE1B-int 1605 - 1112 1604 92837 36 0 25 67 1 4 23 0 2 210 87 93 32 chain 55927 chr4 191154276 + 78251958 78252868 HUERS-P3b-int 2065 - 37 974 55170 12 1 0 6 0 3 33 0 4 28 1 0 123 4 1 17 15 14 30 0 1 27 3 1 90 1 0 24 1 0 9 0 6 42 12 14 25 27 3 44 1 0 18 6 52 14 7 9 152 17 15 11 1 0 46 0 1 62 chain 5911 chr4 191154276 + 78253958 78254040 LTR10G 522 - 26 109 186082 42 4 5 36 chain 352768 chr4 191154276 + 78259223 78263295 L1PA4 6152 - 0 4096 11530 147 5 0 190 1 0 183 0 1 349 0 4 635 0 1 136 1 8 32 0 1 200 0 3 323 0 1 165 0 1 1113 0 1 152 0 1 137 0 4 116 1 3 128 7 10 51 chain 8628 chr4 191154276 + 78265453 78265576 LTR9B 643 - 58 189 167595 66 2 9 36 1 2 18 chain 163174 chr4 191154276 + 78284081 78286407 HERVL-int 5654 - 3236 5654 22925 46 0 3 214 0 1 249 0 2 162 10 18 30 5 6 31 0 4 257 14 16 106 2 0 63 0 1 43 1 6 22 0 4 183 0 7 13 10 12 9 0 2 222 28 25 15 5 48 44 39 43 22 8 11 12 9 11 5 1 0 7 0 1 4 2 1 119 13 17 301 chain 39091 chr4 191154276 + 78286407 78286942 MLT2A2 560 - 0 546 70616 136 7 18 139 9 8 47 16 17 181 chain 30084 chr4 191154276 + 78320938 78321343 LTR3 431 - 9 416 84543 68 9 10 39 0 1 46 1 0 209 0 1 33 chain 17237 chr4 191154276 + 78331760 78332252 L1PB1 5432 - 5 436 134962 5 2 0 18 1 0 12 0 1 21 1 0 22 32 27 13 15 6 6 3 0 16 18 27 17 2 5 10 10 10 13 5 9 9 0 3 9 2 0 9 8 4 8 1 0 9 1 0 23 7 0 9 48 4 51 1 0 55 chain 46497 chr4 191154276 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1 376 0 1 90 0 1 4 0 4 218 0 1 337 0 26 129 2 0 124 22 0 47 1 0 244 1 2 594 1 0 190 0 1 77 1 2 164 0 1 50 0 1 161 1 0 6 1 0 272 1 0 138 0 3 5 8 17 107 1 0 51 1 0 44 1 0 148 chain 528762 chr4 191154276 + 78448933 78455333 L1PA4 6152 - 0 6149 4333 6 2 0 28 0 1 381 0 1 82 0 1 1300 0 4 886 0 1 94 0 1 540 278 7 505 0 1 62 2 1 431 0 1 518 0 9 55 3 4 168 0 2 1059 chain 20323 chr4 191154276 + 78452295 78452530 L1PA4 6152 - 16 255 126171 208 0 4 27 chain 8893 chr4 191154276 + 78460021 78460213 MER50 708 - 22 230 166170 35 10 14 19 8 10 35 0 3 21 3 12 21 15 16 17 3 0 5 chain 9035 chr4 191154276 + 78463660 78463777 MSTA 426 - 288 426 165415 10 0 21 107 chain 499511 chr4 191154276 + 78464900 78471643 L1PA5 6144 - 0 6144 6860 9 3 0 268 0 1 490 0 1 1872 0 1 222 0 1 27 0 3 28 0 4 48 6 7 11 1 0 488 5 15 210 2 0 124 2 1 152 0 1 310 600 0 6 2 0 417 1 0 257 11 5 211 24 0 119 0 17 684 31 45 33 25 12 44 chain 20043 chr4 191154276 + 78483578 78483868 LTR12C 1709 + 785 1203 127002 17 31 71 157 0 88 85 chain 3945 chr4 191154276 + 78483868 78483940 LTR12C 1709 + 1037 1109 188124 31 24 24 17 chain 2181 chr4 191154276 + 78483960 78483987 LTR12C 1709 + 1010 1037 236843 27 chain 40950 chr4 191154276 + 78488038 78488518 LTR7B 505 + 0 499 67976 227 0 22 11 2 0 70 1 0 169 chain 57396 chr4 191154276 + 78490245 78491058 L1PA13 3608 + 2695 3488 54289 38 0 2 394 22 11 20 1 0 113 2 0 62 2 1 28 0 2 25 9 5 47 9 5 18 1 0 22 chain 139574 chr4 191154276 + 78491636 78493302 LTR12C 1709 + 0 1709 26208 259 21 22 155 0 1 381 0 40 253 1 0 6 2 0 107 0 4 481 chain 10043 chr4 191154276 + 78495877 78496080 MER61-int 3695 + 1 188 160365 27 13 1 9 2 0 6 8 6 14 5 6 61 15 14 43 chain 27993 chr4 191154276 + 78496457 78496812 L1PA6 6164 - 2 359 93019 66 5 7 284 chain 14601 chr4 191154276 + 78520417 78520599 MER2 342 - 64 255 142582 129 1 9 31 0 1 21 chain 265347 chr4 191154276 + 78564732 78568467 L1MA1 4479 + 357 4142 15424 4 0 1 72 11 15 36 0 1 67 0 2 39 0 9 75 1 4 18 8 18 24 12 12 62 8 16 84 1 5 259 0 2 13 2 1 4 0 1 42 0 2 45 5 8 260 0 4 116 0 1 140 0 5 187 0 1 28 4 9 33 0 2 32 0 1 27 0 4 19 0 3 36 0 4 79 0 1 15 0 2 99 0 1 72 0 3 97 0 4 21 0 6 56 1 0 105 2 0 33 1 0 20 0 1 34 5 7 92 1 0 27 2 0 86 0 1 85 1 0 18 4 0 76 1 0 12 5 0 126 4 1 129 2 0 148 2 3 45 1 0 24 2 0 16 1 0 71 1 0 16 5 7 10 1 0 15 1 0 73 1 0 5 5 0 6 1 2 14 1 0 26 15 0 71 14 13 23 2 0 25 0 1 9 chain 526516 chr4 191154276 + 78575595 78581988 L1PA7 6471 + 0 6465 4543 403 5 0 336 0 6 244 1 2 15 0 24 77 0 1 122 0 4 259 0 3 233 3 0 2 0 7 902 0 1 211 0 1 310 5 7 50 0 5 259 14 13 110 1 0 228 7 8 38 0 2 90 0 1 162 1 0 44 0 5 116 7 12 214 0 1 143 0 4 295 0 1 19 13 17 168 2 0 446 0 3 81 1 0 118 0 1 356 0 1 23 0 2 87 5 6 22 1 0 144 chain 29767 chr4 191154276 + 78584514 78584827 AluYb8 318 + 0 313 85586 313 chain 15217 chr4 191154276 + 78587351 78587539 L1PA6 6164 + 5982 6162 140724 20 7 0 4 1 0 156 chain 3146 chr4 191154276 + 78601198 78601251 L1ME5 779 - 555 610 222037 17 5 7 31 chain 4804 chr4 191154276 + 78606047 78606133 L1MB7 1623 + 1094 1185 197306 42 15 16 18 0 4 11 chain 82900 chr4 191154276 + 78606678 78607573 L1PA3long 6157 - 923 1819 42220 605 0 1 290 chain 84191 chr4 191154276 + 78607573 78608506 L1PA3long 6157 + 5223 6157 41825 87 0 1 512 0 1 184 1 0 149 chain 26950 chr4 191154276 + 78702145 78702500 L1PA8 5853 + 5505 5853 96451 59 1 0 44 2 0 71 1 0 9 1 0 48 10 9 15 1 0 93 chain 23115 chr4 191154276 + 78743699 78743996 AluSp 311 + 0 294 115061 56 4 1 237 chain 23515 chr4 191154276 + 78761566 78761857 AluSp 311 + 0 307 113039 68 3 0 124 0 19 96 chain 26167 chr4 191154276 + 78778743 78779046 AluSq10 312 + 0 303 99337 303 chain 14397 chr4 191154276 + 78809871 78810056 L1PA5 6144 - 3 189 143215 150 8 9 27 chain 166962 chr4 191154276 + 78810063 78811978 L1P1 4361 + 2409 4321 22398 836 3 0 5 1 6 517 6 0 322 0 3 50 1 0 157 1 0 16 chain 146632 chr4 191154276 + 78860093 78862126 L1PB1 5432 - 10 2388 25066 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 26 14 13 1 0 27 0 1 16 1 0 16 2 1 38 30 395 78 1 4 11 1 2 60 4 0 206 17 16 75 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191154276 + 78941293 78941467 MER2 342 + 147 322 155036 132 21 22 21 chain 46365 chr4 191154276 + 78946554 78947183 MER4B 649 - 30 649 61716 38 3 4 13 1 0 143 2 0 56 5 0 249 2 0 84 2 1 31 chain 10116 chr4 191154276 + 79005350 79005514 MER44A 345 + 117 283 160011 54 7 0 6 0 10 15 0 4 39 0 1 11 6 0 26 chain 336629 chr4 191154276 + 79006819 79010592 L1PA4 6152 + 2377 6150 11978 1082 7 10 212 1 0 1070 12 10 1389 chain 121982 chr4 191154276 + 79017020 79018578 THE1B-int 1605 - 0 1605 30391 9 0 1 408 0 14 46 9 10 222 3 4 74 0 1 359 0 25 309 3 1 93 0 6 23 chain 565680 chr4 191154276 + 79026889 79032919 L1HS 6032 + 1 6032 177 3122 4 5 2904 chain 531418 chr4 191154276 + 79033991 79040121 L1PA4 6152 - 9 6152 4029 1478 1 0 211 0 1 24 0 1 258 7 6 257 0 1 2065 1 0 406 0 1 93 0 2 103 1 0 646 0 4 15 14 7 50 0 14 500 chain 22009 chr4 191154276 + 79040316 79040807 L1MA5A 2387 - 14 445 120191 11 2 0 20 2 1 11 4 0 12 25 12 11 0 1 5 16 14 45 28 0 4 0 1 7 1 0 4 3 1 29 9 10 18 2 0 49 1 0 54 6 0 10 13 12 89 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79136366 79136647 AluSc 308 - 27 308 115482 281 chain 13566 chr4 191154276 + 79138180 79138529 MLT2B2 565 - 0 565 146106 38 67 272 20 7 5 69 26 38 33 31 32 58 chain 65319 chr4 191154276 + 79173758 79174728 MER11A 1151 - 0 1151 50416 55 12 11 9 0 4 77 1 2 100 1 59 19 0 1 66 0 4 39 1 2 9 9 12 80 0 1 56 0 13 79 1 0 66 28 9 47 0 2 24 0 11 60 0 4 66 22 121 43 chain 194018 chr4 191154276 + 79179864 79181993 L1PA3long 6157 - 2 2136 19670 1333 0 5 796 chain 2741 chr4 191154276 + 79185783 79185901 MIR 256 + 71 220 229610 26 2 3 9 64 94 17 chain 537056 chr4 191154276 + 79192472 79198610 L1PA5 6144 - 3 6144 3307 110 1 0 730 0 4 639 1 0 1911 0 1 378 2 1 38 0 1 2328 chain 13390 chr4 191154276 + 79208350 79208510 THE1D 372 - 212 372 146752 160 chain 533187 chr4 191154276 + 79223021 79229034 L1PA3long 6157 - 11 6157 3822 328 1 0 337 0 1 180 2 0 839 0 3 876 9 0 312 0 1 9 0 3 2015 2 0 338 0 128 197 0 1 179 0 9 235 1 2 153 chain 31813 chr4 191154276 + 79249818 79250223 HERVK11-int 2540 + 1827 2234 81144 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31 9 18 30 7 0 8 0 7 138 chain 39893 chr4 191154276 + 80617582 80618089 LTR7B 505 + 0 490 69466 200 34 0 23 8 26 40 2 1 200 chain 566067 chr4 191154276 + 80625706 80631735 L1HS 6032 + 3 6032 147 6029 chain 30217 chr4 191154276 + 80651371 80651764 MLT2A1 477 + 0 395 84139 44 0 2 122 5 2 9 0 1 24 0 1 179 0 1 10 chain 64421 chr4 191154276 + 80682430 80683158 L1PA5 6144 - 12 740 50831 728 chain 7207 chr4 191154276 + 80686777 80686865 L1PA8 5853 + 5765 5853 176018 88 chain 28533 chr4 191154276 + 80698482 80698784 AluYg6 310 + 0 302 91037 302 chain 189806 chr4 191154276 + 80713838 80716256 L1PA8A 6298 + 3837 6289 20071 41 0 1 353 1 2 74 0 3 57 6 7 137 0 2 161 8 12 138 8 7 654 1 0 97 0 3 70 1 4 14 1 0 224 0 7 229 0 10 39 10 12 94 chain 34188 chr4 191154276 + 80730311 80730741 L1PA10 4194 - 33 459 77367 11 1 0 34 3 0 381 chain 82207 chr4 191154276 + 80745578 80746625 MER11C 1089 - 25 1089 42675 148 1 0 33 0 1 16 0 1 127 0 1 38 1 0 4 1 5 304 1 0 65 0 4 62 0 9 246 chain 66028 chr4 191154276 + 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chain 3945 chr4 191154276 + 83095257 83095307 MIR 256 - 136 186 208199 50 chain 535946 chr4 191154276 + 83096563 83102691 L1PA4 6152 + 8 6138 3451 183 0 1 530 1 0 717 0 1 1532 0 2 5 2 0 198 1 0 886 2 1 286 0 1 948 1 2 591 0 1 245 chain 472093 chr4 191154276 + 83105275 83111431 L1PA7 6471 + 5 6469 7968 175 0 1 4 1 0 16 14 13 11 51 52 44 78 279 121 5 15 16 4 6 7 2 0 28 1 76 177 0 21 65 7 13 1023 17 7 85 2 1 483 0 3 331 13 16 390 1 2 11 1 0 36 4 5 471 11 4 28 6 7 49 0 1 102 0 1 405 0 2 444 0 1 167 0 1 399 2 1 13 0 1 5 1 0 305 1 0 360 0 1 163 chain 15436 chr4 191154276 + 83113872 83114093 MER30 238 - 5 238 140089 18 0 1 24 8 5 61 4 0 8 0 18 98 chain 18608 chr4 191154276 + 83142623 83142979 THE1B 368 + 0 368 131199 111 0 3 6 15 13 43 24 17 17 0 4 14 41 49 31 5 11 49 chain 39995 chr4 191154276 + 83168895 83169415 MER1A 529 + 1 514 69325 317 0 1 133 17 9 53 chain 35210 chr4 191154276 + 83172929 83173312 L1PA3long 6157 + 5774 6157 75908 383 chain 49820 chr4 191154276 + 83186822 83187400 L1PA5 6144 + 5546 6142 59143 193 0 18 385 chain 515936 chr4 191154276 + 83192632 83201253 L1PA7 6471 + 2 6467 5579 241 0 1 9 6 13 139 1 0 7 1 0 61 1 0 90 11 8 171 10 15 75 1 0 372 0 1 5 0 4 39 15 34 69 0 1 738 7 9 60 1 0 4 0 1 472 1 0 57 1 2 451 0 2 63 0 2 192 2237 0 170 0 2 342 1 2 5 1 0 280 0 1 61 0 1 77 0 2 172 0 4 55 0 8 82 0 4 60 0 17 559 0 1 299 0 2 492 0 2 357 chain 538602 chr4 191154276 + 83218690 83224839 L1PA5 6144 - 0 6141 3053 332 1 2 59 0 2 322 0 1 1132 2 1 717 0 1 199 0 1 244 5 0 485 1 0 181 0 1 16 4 0 1015 1 0 67 1 0 797 10 9 227 2 1 329 chain 15255 chr4 191154276 + 83225634 83225808 AluYf4 310 - 2 176 140615 174 chain 45167 chr4 191154276 + 83228070 83231503 L1M1 2793 - 99 1954 62855 8 1 0 9 1 0 49 1 0 7 1 2 15 0 1 14 614 0 32 21 5 118 6 4 21 1737 1086 72 4 0 44 0 1 26 315 0 72 0 1 43 0 23 136 13 13 53 chain 63308 chr4 191154276 + 83232992 83233872 L1PB3 3668 + 2265 3153 51318 71 10 12 76 0 3 238 1 0 253 5 7 6 2 0 10 7 9 34 13 14 80 0 1 74 chain 24548 chr4 191154276 + 83238041 83238392 THE1A 353 + 0 353 107265 129 1 2 71 13 12 78 3 5 56 chain 130998 chr4 191154276 + 83238392 83239970 THE1A-int 1579 + 0 1574 27863 612 0 2 877 6 0 83 chain 2884 chr4 191154276 + 83240145 83240176 L1MC1 2226 + 1354 1385 227275 31 chain 18960 chr4 191154276 + 83242128 83242374 AluSc8 310 + 10 263 130204 32 11 15 75 0 3 128 chain 55729 chr4 191154276 + 83247195 83247836 L1PA5 6144 + 5496 6130 55282 141 7 0 493 chain 54513 chr4 191154276 + 83254782 83255478 LTR12_ 688 - 15 688 56020 534 0 1 56 23 0 57 1 0 25 chain 251477 chr4 191154276 + 83256607 83259704 HERV9-int 5642 - 818 5637 16146 11 0 1 176 0 1795 377 8 7 405 1 0 261 0 3 134 0 1 94 0 1 259 0 1 20 0 2 165 6 7 139 82 0 174 7 6 69 0 4 106 8 6 595 chain 56177 chr4 191154276 + 83259745 83260455 LTR12 884 - 15 884 55025 219 4 5 37 0 4 188 0 1 4 1 0 35 2 0 11 0 157 183 1 0 25 chain 44706 chr4 191154276 + 83307389 83307895 MER9a1 513 - 0 513 63372 119 0 7 387 chain 124920 chr4 191154276 + 83311700 83314790 Charlie3 2679 + 649 2437 29421 11 0 1 33 0 8 209 640 21 182 4 41 46 3 7 88 0 1 194 316 0 144 0 2 215 0 1 234 560 139 211 chain 50730 chr4 191154276 + 83336980 83337633 LTR12_ 688 + 0 688 58483 248 0 1 93 0 24 81 13 11 55 1 0 34 5 7 17 0 11 106 chain 15336 chr4 191154276 + 83339054 83339318 L1MA6 2487 - 192 439 140378 19 2 0 38 27 11 140 7 11 7 3 0 21 chain 30245 chr4 191154276 + 83367842 83368158 AluYb8 318 - 2 318 84072 316 chain 23821 chr4 191154276 + 83389905 83390192 AluSg7 307 - 11 298 111357 16 0 1 153 1 0 117 chain 6029 chr4 191154276 + 83391431 83391503 MLT1G3 592 + 478 550 184991 72 chain 43730 chr4 191154276 + 83394469 83395183 LTR17 781 + 0 781 64531 394 166 209 51 0 2 62 1 23 40 chain 197569 chr4 191154276 + 83397193 83399470 HERV17-int 4347 + 13 2275 19383 14 1 0 51 1 0 34 2 0 27 1 0 473 20 8 8 7 0 29 1 0 150 0 9 149 1 0 467 0 1 20 16 17 805 chain 51544 chr4 191154276 + 83400490 83401175 LTR17 781 + 0 728 57931 406 2 1 65 3 0 47 4 3 10 2 1 15 9 58 122 chain 8711 chr4 191154276 + 83401206 83401309 THE1C 375 - 270 373 167138 103 chain 15427 chr4 191154276 + 83409113 83409390 L1PB1 5432 - 10 264 140109 18 1 0 12 1 0 22 1 0 24 2 0 9 6 5 5 2 0 19 16 6 6 2 0 15 1 0 45 1 0 15 2 1 52 chain 40491 chr4 191154276 + 83434050 83434542 L1P3 4156 + 755 1248 68603 78 10 11 154 0 1 4 1 0 245 chain 3352 chr4 191154276 + 83453826 83453864 LTR37A 408 + 116 154 218020 38 chain 24053 chr4 191154276 + 83457235 83457534 AluSc 308 + 4 304 110024 83 0 1 216 chain 6970 chr4 191154276 + 83461888 83462088 L1MA8 2339 - 6 179 177684 29 66 47 24 2 0 34 9 3 36 chain 42386 chr4 191154276 + 83468768 83469388 L1PA16 3655 + 3004 3619 66172 181 4 5 11 1 0 89 2 0 225 0 4 43 36 34 7 5 0 16 chain 8602 chr4 191154276 + 83479337 83479463 MER3 215 - 5 142 167715 44 9 21 40 1 0 32 chain 30584 chr4 191154276 + 83479951 83480403 LTR7B 505 + 0 495 83236 94 0 3 8 0 10 60 0 38 12 3 27 28 29 0 85 1 0 76 14 13 20 0 1 5 2 0 15 chain 9354 chr4 191154276 + 83497069 83497189 MER85 139 + 8 139 163783 82 0 10 9 0 1 29 chain 7666 chr4 191154276 + 83528527 83528713 MLT1C 463 + 269 456 173135 26 70 72 71 1 0 18 chain 63240 chr4 191154276 + 83553198 83553925 L1PA6 6164 - 7 733 51343 372 2 1 353 chain 13299 chr4 191154276 + 83554966 83555438 L1MB8 1703 - 41 464 147079 31 3 0 4 6 0 21 163 123 18 80 79 44 1 2 101 chain 16146 chr4 191154276 + 83572453 83572756 L1PB1 5432 + 5144 5422 137911 11 8 4 9 2 0 30 0 1 21 2 1 15 0 1 44 1 0 15 1 0 4 2 0 9 8 0 17 9 6 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 293662 chr4 191154276 + 83577262 83580963 L1PA7 6471 - 10 3485 13786 28 0 1 112 2 0 5 4 0 242 0 3 446 0 3 254 1 0 689 0 4 283 0 1 292 246 7 82 1 0 38 0 1 417 0 4 445 0 4 114 chain 46615 chr4 191154276 + 83580963 83581521 L1PA7 6471 + 2442 3003 61458 78 0 2 102 7 8 371 chain 10516 chr4 191154276 + 83584693 83584821 MER85 139 - 0 138 158177 40 0 10 88 chain 14498 chr4 191154276 + 83587519 83587677 AluY 311 + 133 292 142894 99 0 1 59 chain 14028 chr4 191154276 + 83635815 83636043 Tigger4a 237 + 1 237 144471 27 22 30 4 1 0 117 3 4 54 chain 24246 chr4 191154276 + 83657480 83657773 AluSq10 312 + 1 295 108966 108 1 2 184 chain 5710 chr4 191154276 + 83684885 83684988 MLT1B 390 + 283 390 188012 36 24 28 43 chain 27945 chr4 191154276 + 83699086 83699416 L1PA8A 6298 + 5897 6226 93188 8 1 0 321 chain 24133 chr4 191154276 + 83700021 83700302 AluSp 311 - 14 296 109564 118 0 1 163 chain 2634 chr4 191154276 + 83709340 83709378 MLT1A0 366 + 265 305 231218 23 1 3 14 chain 3106 chr4 191154276 + 83725603 83725638 MIR 256 + 196 231 222804 35 chain 38781 chr4 191154276 + 83729810 83730824 L1MA3 4352 + 3701 4352 71035 95 1 17 247 443 76 100 3 0 22 2 0 24 2 1 5 1 0 29 1 0 5 12 8 22 chain 22284 chr4 191154276 + 83739216 83739497 AluSp 311 - 12 301 118979 233 8 16 40 chain 142150 chr4 191154276 + 83752940 83754663 L1PA6 6164 + 4379 6118 25796 92 1 0 20 0 1 8 1 0 12 0 4 116 0 1 298 1 0 236 0 5 836 0 8 102 chain 14102 chr4 191154276 + 83767626 83767857 Tigger2 2703 + 2273 2516 144213 102 7 19 15 11 27 11 16 0 69 chain 3260 chr4 191154276 + 83784719 83784755 MER4D0 881 - 78 114 219783 36 chain 19255 chr4 191154276 + 83835935 83836285 L1PA14 3548 - 108 448 129365 25 4 3 14 2 1 10 1 0 8 4 2 5 0 1 26 4 0 13 1 0 100 0 5 6 1 0 61 5 7 16 1 0 6 2 0 10 11 7 14 chain 5832 chr4 191154276 + 83870873 83870962 L1MA9 1812 - 528 620 186844 34 1 0 33 4 8 17 chain 60611 chr4 191154276 + 83908583 83909355 L1PA8A 6298 - 7 779 52516 98 8 8 56 1 0 559 6 7 16 0 1 15 2 0 7 0 1 4 chain 18244 chr4 191154276 + 83944189 83944527 THE1D 372 + 0 334 132223 50 9 0 24 4 5 25 0 1 61 34 36 23 1 0 50 24 26 33 chain 56888 chr4 191154276 + 83944527 83945265 L1PA8 5853 + 5108 5853 54608 439 0 1 16 1 0 44 2 0 16 0 1 49 8 18 48 2 1 19 1 0 93 chain 4167 chr4 191154276 + 83981769 83981817 Charlie1a 1436 - 477 525 205009 48 chain 5849 chr4 191154276 + 83985528 83985649 L1MB3 1562 - 7 129 186697 15 25 28 74 2 0 5 chain 81169 chr4 191154276 + 84005899 84006846 LTR13A 966 + 0 953 43103 76 0 4 576 5 7 290 chain 15807 chr4 191154276 + 84020692 84021662 MSTA 426 + 0 414 138935 17 0 1 19 7 8 50 33 55 48 686 103 12 2 5 96 chain 17760 chr4 191154276 + 84023716 84023957 Tigger1 2417 + 1587 1837 133544 35 0 1 166 7 15 33 chain 14846 chr4 191154276 + 84029132 84029292 L1PA5 6144 + 5977 6137 141788 160 chain 23351 chr4 191154276 + 84038270 84038553 AluSp 311 + 2 286 113914 262 0 1 21 chain 27797 chr4 191154276 + 84051022 84051317 AluYa5 310 + 15 310 93708 295 chain 123809 chr4 191154276 + 84055970 84057557 THE1B-int 1605 - 7 1605 29767 8 0 1 52 1 0 92 9 1 249 0 12 19 21 0 177 0 5 6 2 0 525 0 25 426 chain 6174 chr4 191154276 + 84079847 84080031 MER2 342 + 8 223 183776 16 31 34 20 47 64 21 0 11 49 chain 5346 chr4 191154276 + 84081001 84081063 MSTC 436 - 0 62 191577 62 chain 2739 chr4 191154276 + 84083520 84083623 MIR 256 + 5 123 229623 25 57 72 21 chain 531659 chr4 191154276 + 84085215 84091354 L1PA5 6144 + 2 6139 4003 1167 9 0 1140 1 0 572 0 7 288 2 1 166 3 0 698 0 1 299 0 4 659 0 1 1027 1 0 107 chain 3358 chr4 191154276 + 84092297 84092347 MER50C 576 - 340 401 217904 15 1 12 34 chain 44905 chr4 191154276 + 84094162 84094673 MER9a1 513 - 0 512 63170 381 0 1 130 chain 6154 chr4 191154276 + 84096415 84096611 MER20 218 + 0 156 183949 16 54 22 17 44 36 65 chain 167017 chr4 191154276 + 84102597 84104524 SVA_D 2077 + 0 2073 22391 10 1 0 6 1 0 6 1 0 12 0 5 857 14 18 8 0 1 24 14 7 67 0 51 160 0 78 45 1 18 15 13 13 672 chain 104746 chr4 191154276 + 84105758 84107180 SVA_E 1901 - 0 1232 35557 769 41 0 37 1 0 130 223 0 38 3 0 110 1 0 5 1 0 3 0 80 60 chain 3329 chr4 191154276 + 84106527 84106568 SVA_E 1901 - 895 944 114172 27 5 13 9 chain 3791 chr4 191154276 + 84106736 84106802 SVA_E 1901 - 887 953 126294 66 chain 11140 chr4 191154276 + 84106840 84106959 SVA_E 1901 - 642 761 97391 119 chain 83480 chr4 191154276 + 84107223 84108176 SVA_D 2077 - 869 2074 42126 122 8 189 132 0 40 548 0 10 8 0 1 98 0 20 37 chain 5684 chr4 191154276 + 84110040 84110107 MER31A 484 - 399 466 188258 67 chain 35727 chr4 191154276 + 84115836 84116298 LTR2 463 + 0 463 75230 254 0 2 124 4 5 26 9 8 20 1 0 24 chain 37410 chr4 191154276 + 84116428 84117045 LTR9B 643 + 5 635 72945 65 0 3 8 1 6 26 0 15 76 23 22 104 5 6 77 26 27 36 3 1 34 23 13 50 6 7 54 chain 2817 chr4 191154276 + 84124335 84124373 Tigger4 2445 + 200 236 228502 20 2 0 16 chain 12232 chr4 191154276 + 84135067 84135283 MER30 238 + 0 238 151293 16 47 45 48 1 25 104 chain 3599 chr4 191154276 + 84146140 84146180 MER57F 435 + 385 425 213665 40 chain 23983 chr4 191154276 + 84155647 84156043 LTR7 482 + 0 475 110425 31 46 84 109 9 41 20 12 11 8 0 1 10 0 9 151 chain 468182 chr4 191154276 + 84162689 84168102 L1PA6 6164 + 0 6162 8101 88 0 735 1266 19 12 112 0 4 116 0 1 466 0 4 379 1 2 4 0 1 115 0 1 625 0 1 435 5 9 939 0 6 833 2 0 8 chain 25933 chr4 191154276 + 84170628 84170920 AluSp 311 - 11 303 100284 292 chain 119822 chr4 191154276 + 84209935 84211519 THE1B-int 1605 + 0 1596 31114 79 0 12 21 1 4 122 0 3 189 41 24 161 0 1 139 0 9 204 2 1 41 1 0 4 0 1 185 5 6 335 0 1 54 chain 4508 chr4 191154276 + 84248930 84249032 MER63A 208 + 98 202 200698 36 34 36 32 chain 123656 chr4 191154276 + 84267411 84268971 THE1C-int 1605 - 15 1578 29827 14 5 4 1120 0 7 11 4 0 116 2 3 288 chain 17130 chr4 191154276 + 84272342 84272611 L1PA8 5853 - 0 265 135231 11 1 0 81 2 1 17 1 0 41 8 7 7 1 0 6 2 1 14 0 4 55 3 1 19 chain 32632 chr4 191154276 + 84281410 84281839 MLT2A1 477 + 1 477 79794 87 14 23 58 4 1 18 0 1 196 1 41 51 chain 4262 chr4 191154276 + 84282317 84282368 MER2 342 - 155 206 203720 51 chain 2538 chr4 191154276 + 84292619 84292665 LTR24B 570 - 0 45 232684 13 7 6 26 chain 27441 chr4 191154276 + 84295590 84295945 THE1A 353 - 0 353 94845 150 2 1 92 1 0 110 chain 125948 chr4 191154276 + 84295947 84297523 THE1A-int 1579 - 2 1579 29118 920 2 0 14 0 1 28 0 1 86 6 9 342 0 1 5 2 1 37 0 2 101 11 7 22 chain 22924 chr4 191154276 + 84297523 84298175 THE1A 353 - 0 328 115989 151 1 0 21 321 4 46 10 5 16 1 0 85 chain 541548 chr4 191154276 + 84319059 84325187 L1PA4 6152 + 1 6152 2582 1415 0 5 193 0 1 110 1 0 386 0 2 453 0 4 946 0 4 550 0 1 169 0 1 45 0 1 1854 0 5 6 chain 8929 chr4 191154276 + 84351340 84351437 L1PA5 6144 + 6046 6143 165985 97 chain 44597 chr4 191154276 + 84417137 84417697 LTR19B 566 - 0 562 63481 30 1 2 5 1 0 15 3 0 16 0 5 489 chain 22580 chr4 191154276 + 84418115 84418538 L1MA5A 2387 - 99 1040 117670 12 0 1 43 44 24 27 1 0 22 9 7 14 35 576 7 1 0 208 chain 22852 chr4 191154276 + 84426120 84426436 MER48 407 - 61 407 116329 75 19 29 79 1 21 142 chain 190027 chr4 191154276 + 84427839 84431079 HERVH48-int 3304 - 24 3005 20044 9 2 0 11 27 15 24 79 55 11 2 0 69 63 47 66 2 0 5 1 0 50 2 0 23 1 0 9 13 5 26 11 5 8 3 0 27 127 93 5 2 0 11 2 0 7 2 0 17 2 0 40 7 5 45 2 1 17 1 0 4 1 0 49 1 0 176 12 11 33 8 7 13 1 0 12 0 1 4 1 0 52 2 0 18 1 0 138 7 6 95 3 0 178 0 1 117 1 0 89 1 0 221 1 0 6 2 1 10 1 0 122 27 17 14 1 0 18 10 8 21 1 0 15 9 6 20 2 0 3 3 0 32 2 0 14 1 0 17 4 3 11 6 3 115 25 17 68 3 2 31 1 0 5 0 5 31 14 12 54 3 1 4 1 0 15 4 0 19 1 0 3 8 0 13 45 0 53 4 2 9 1 0 47 1 0 32 12 6 10 6 0 13 1 0 72 1 0 5 6 2 48 0 1 14 chain 5710 chr4 191154276 + 84443437 84443509 MER39 703 + 175 247 188010 72 chain 41601 chr4 191154276 + 84443567 84444111 MER41A 554 + 0 554 67153 66 11 8 18 0 1 42 6 12 303 0 1 18 0 5 80 chain 31165 chr4 191154276 + 84452297 84453023 MER57A1 433 + 10 430 82229 90 1 0 23 321 0 122 0 1 4 0 14 18 0 1 147 chain 10679 chr4 191154276 + 84478571 84478765 MER30 238 - 1 234 157490 109 4 21 23 40 62 18 chain 44836 chr4 191154276 + 84486821 84487359 LTR14C 587 - 0 587 63245 135 0 1 109 0 38 53 0 10 241 chain 28247 chr4 191154276 + 84496020 84496328 AluYf4 310 - 2 310 92127 308 chain 13035 chr4 191154276 + 84521251 84521613 MLT1A 405 - 32 401 148102 29 152 161 11 4 0 37 7 10 101 1 0 20 chain 7031 chr4 191154276 + 84541482 84541599 MSTA 426 + 0 176 177245 25 3 1 66 10 71 13 chain 2983 chr4 191154276 + 84556786 84556833 Charlie4a 502 - 118 168 225426 28 0 7 6 4 0 9 chain 6866 chr4 191154276 + 84557352 84557432 HY3 101 - 3 83 178446 80 chain 32249 chr4 191154276 + 84557840 84558298 LTR7B 505 + 0 498 80443 108 0 10 57 0 38 12 3 27 28 30 0 85 1 0 75 15 14 44 chain 23728 chr4 191154276 + 84559776 84560153 MSTA 426 + 2 424 111887 64 1 0 42 0 22 74 16 21 11 8 7 53 0 20 25 14 14 69 chain 29759 chr4 191154276 + 84591057 84591490 MLT2A1 477 + 0 477 85615 48 0 2 85 7 8 18 8 12 212 4 0 10 2 44 19 1 0 19 chain 38180 chr4 191154276 + 84605371 84606185 L1PB1 5432 - 2 779 71868 4 1 0 8 1 0 14 1 0 12 6 5 17 1 0 24 2 0 11 15 12 12 8 0 15 17 15 41 9 8 11 2 1 51 3 1 9 2 0 3 2 0 9 140 111 56 0 5 22 1 2 66 4 18 214 chain 11804 chr4 191154276 + 84638122 84638369 L1MB2 1706 - 11 266 153014 72 1 0 5 0 1 6 1 0 13 39 24 35 23 47 52 chain 4772 chr4 191154276 + 84650499 84650568 L1ME3A 1206 + 972 1040 197666 46 1 0 22 chain 42583 chr4 191154276 + 84651031 84651722 L1PA14 3548 + 2788 3467 65921 29 2 4 99 0 1 11 9 7 14 2 0 38 15 12 83 0 2 22 2 0 5 2 0 6 0 3 7 2 0 5 2 1 76 13 12 107 16 11 36 4 2 6 1 0 11 1 0 16 1 0 42 0 5 6 chain 26657 chr4 191154276 + 84657167 84657469 AluSg4 309 - 6 309 97465 177 0 1 125 chain 49166 chr4 191154276 + 84726728 84727288 L1PA2 6032 + 5470 6030 59619 396 5 0 7 5 10 147 chain 21820 chr4 191154276 + 84744560 84744821 L1PA7 6471 - 8 269 120943 21 0 1 126 1 0 113 chain 84381 chr4 191154276 + 84744826 84745833 L1PA7 6471 + 5178 6198 41762 311 0 1 107 0 6 11 0 4 82 0 2 496 chain 27282 chr4 191154276 + 84746834 84747213 L1PA8 5853 - 0 372 95331 93 1 0 16 1 0 49 17 16 72 3 1 25 1 0 17 1 0 83 chain 16548 chr4 191154276 + 84747216 84747435 L1P3 4156 + 3923 4139 136800 184 2 0 6 1 0 26 chain 5727 chr4 191154276 + 84750290 84750457 MER58A 224 - 11 180 187873 45 83 85 39 chain 44945 chr4 191154276 + 84771172 84771654 LTR7 482 - 0 482 63124 482 chain 35600 chr4 191154276 + 84782986 84783422 L1PA7 6471 - 1 440 75413 12 7 9 149 3 4 265 chain 18563 chr4 191154276 + 84799998 84800396 THE1B 368 + 0 368 131326 22 0 1 55 2 1 32 51 24 42 47 37 14 15 23 55 7 6 56 chain 12803 chr4 191154276 + 84817526 84817676 L1PA6 6164 - 5 154 149039 27 1 0 122 chain 11628 chr4 191154276 + 84827190 84827342 MER20 218 - 18 176 153783 33 0 1 75 1 6 43 chain 16710 chr4 191154276 + 84829514 84829693 L1PA5 6144 - 9 188 136374 179 chain 167464 chr4 191154276 + 84863983 84865850 SVA_D 2077 - 1 2061 22343 315 1 0 324 0 49 295 0 2 29 23 166 880 chain 544478 chr4 191154276 + 84873341 84879358 L1PA3long 6157 - 10 6153 2146 354 2 0 2610 1 0 2279 0 128 623 0 1 148 chain 280590 chr4 191154276 + 84911472 84915209 MER61-int 3695 + 7 3695 14611 21 14 11 7 29 0 225 2 1 67 0 1 70 29 15 329 0 1 91 12 17 269 0 5 113 0 1 72 1 0 111 2 1 106 2 0 67 2 0 11 0 5 322 0 2 183 2 1 23 2 0 230 10 0 383 1 0 94 1 0 38 1 0 253 2 0 176 4 5 13 1 0 82 5 6 163 7 8 37 0 6 8 13 7 31 chain 11141 chr4 191154276 + 84915564 84915714 MER49 923 + 126 276 155669 15 0 1 6 4 3 125 chain 2929 chr4 191154276 + 84924192 84924223 L1PA4 6152 + 6104 6135 226515 31 chain 24974 chr4 191154276 + 84925408 84925687 L1PA5 6144 - 9 288 104939 279 chain 12246 chr4 191154276 + 84925923 84926214 L1PA15 4387 + 4070 4345 151223 24 16 15 18 2 1 52 11 12 10 4 0 15 1 0 37 19 16 33 11 9 13 9 4 16 chain 28344 chr4 191154276 + 84951460 84951774 L1PA7 6471 + 6151 6465 91783 314 chain 3549 chr4 191154276 + 84959550 84959594 X8_LINE 244 - 19 63 214569 44 chain 4329 chr4 191154276 + 84960109 84960184 MER53 195 + 10 86 202842 23 11 12 41 chain 2878 chr4 191154276 + 84994595 84994625 L1HS 6032 - 5038 5068 225544 30 chain 462293 chr4 191154276 + 84994625 84999673 L1PA2 6032 + 979 6032 8315 2068 3 4 1325 0 4 1652 chain 69641 chr4 191154276 + 85004743 85005511 L1PA5 6144 + 5360 6128 48553 768 chain 29689 chr4 191154276 + 85023446 85023900 MLT2A1 477 + 0 477 85869 140 0 1 28 1 5 12 23 0 16 7 8 114 1 0 16 2 3 41 10 50 43 chain 19471 chr4 191154276 + 85034299 85034532 L1PA8A 6298 + 6029 6262 128752 233 chain 197786 chr4 191154276 + 85036709 85039608 L1P2 5180 - 1034 3594 19373 95 0 1 234 8 20 174 0 1 237 1 0 130 0 1 80 1 2 340 345 2 119 8 11 134 1 0 246 3 1 109 0 2 117 1 0 10 5 8 47 33 21 32 0 1 18 2 1 84 3 0 282 chain 169610 chr4 191154276 + 85039608 85041603 L1PA7 6471 + 4465 6467 22102 505 9 10 567 0 1 63 3 8 848 chain 551335 chr4 191154276 + 85047938 85053967 L1PA2 6032 + 0 6032 1273 74 0 1 181 1 0 579 0 1 988 0 1 213 0 1 3993 chain 3735 chr4 191154276 + 85071575 85071622 MADE1 96 - 48 96 211387 21 0 1 26 chain 24128 chr4 191154276 + 85096705 85096963 AluYg6 310 - 9 267 109597 258 chain 3120 chr4 191154276 + 85115280 85115313 L1PB4 2604 + 2324 2357 222543 33 chain 2926 chr4 191154276 + 85122550 85122583 MER33 330 - 109 142 226572 33 chain 512878 chr4 191154276 + 85123482 85130903 L1PA7 6471 + 0 6465 5892 65 1 2 169 12 27 149 3 4 199 20 19 64 20 18 448 0 1 48 0 4 20 6 3 229 0 1 218 0 3 5 2 1 56 2 1 878 14 0 468 0 4 508 1 0 21 0 1 104 966 0 1216 0 1 29 0 1 636 1 0 79 0 1 166 0 1 114 1 0 229 1 0 5 1 2 90 14 15 110 2 1 31 chain 8589 chr4 191154276 + 85154809 85154912 U6 107 + 0 103 167792 103 chain 27677 chr4 191154276 + 85158534 85158905 THE1C 375 + 0 375 94124 135 4 8 42 1 2 163 1 0 25 chain 25095 chr4 191154276 + 85183301 85183645 THE1B 368 + 0 368 104320 19 4 0 19 0 32 102 1 0 28 2 0 93 1 0 75 chain 22853 chr4 191154276 + 85186889 85187154 L1PA7 6471 + 6204 6470 116321 185 0 1 80 chain 12794 chr4 191154276 + 85198500 85198777 L1PB1 5432 - 10 264 149080 12 7 6 13 1 0 21 1 0 24 2 0 14 9 6 18 42 29 42 1 0 16 2 1 52 chain 467088 chr4 191154276 + 85206796 85213085 L1PA7 6471 + 7 6469 8144 196 4 0 6 1 5 189 0 2 26 10 11 251 0 1 772 0 6 563 1 0 120 0 2 6 2 1 182 1 0 286 4 0 6 14 17 243 1 2 51 477 8 245 3 0 198 7 0 88 1 0 784 2 1 398 1 5 145 0 649 149 1 0 79 0 2 397 5 4 34 8 11 149 12 1 171 chain 554073 chr4 191154276 + 85219933 85225963 L1PA2 6032 + 3 6029 939 254 1 0 2881 0 1 382 5 1 2507 chain 57881 chr4 191154276 + 85235107 85235774 L1PA5 6144 - 4 672 54043 287 0 1 380 chain 54572 chr4 191154276 + 85235774 85236382 L1PA5 6144 + 4855 5464 55984 328 0 1 280 chain 73545 chr4 191154276 + 85242657 85243839 L1PA16 3655 - 128 1218 46767 140 17 7 9 2 0 64 31 29 74 1 0 92 4 29 166 1 0 13 1 0 216 7 8 5 1 0 33 3 0 6 6 5 44 105 0 117 0 9 24 chain 6346 chr4 191154276 + 85247764 85247854 MER134 117 - 32 117 182422 13 7 2 70 chain 80787 chr4 191154276 + 85260732 85261777 MER11C 1089 - 26 1089 43276 143 1 0 54 0 1 127 0 1 38 1 0 5 0 4 95 6 4 205 1 0 46 1 0 19 1 5 61 0 9 16 0 5 225 chain 294843 chr4 191154276 + 85264151 85268516 L1PA8A 6298 + 2019 6116 13713 130 0 1 4 8 7 59 10 11 54 13 14 193 0 1 9 1 2 251 0 12 253 314 0 299 47 47 24 0 1 7 1 0 7 18 20 82 2 3 254 0 6 85 27 25 242 5 6 304 15 26 192 6 8 831 1 4 12 3 9 15 5 6 289 1 0 292 chain 8062 chr4 191154276 + 85285926 85286028 MLT1B 390 + 287 390 170680 34 0 1 68 chain 30158 chr4 191154276 + 85317614 85317980 L1PA6 6164 - 2 364 84311 6 4 0 29 1 0 294 0 1 32 chain 115265 chr4 191154276 + 85344642 85345952 L1PA5 6144 + 4831 6140 32694 462 0 5 836 6 0 6 chain 7447 chr4 191154276 + 85377967 85378066 L1PA8 5853 + 5715 5812 174459 25 2 1 19 1 0 52 chain 12804 chr4 191154276 + 85406176 85406320 AluSp 311 + 4 148 149035 144 chain 193634 chr4 191154276 + 85444517 85446649 L1PA4 6152 + 4013 6144 19724 622 1 0 1509 chain 75629 chr4 191154276 + 85454214 85455381 L1PA14 3548 + 2311 3456 45698 117 0 1 114 1 0 146 1 0 106 0 1 142 21 17 46 10 6 67 21 23 12 1 0 19 7 5 4 1 0 67 44 43 66 34 28 35 5 3 14 5 3 21 1 0 39 chain 31627 chr4 191154276 + 85459602 85460025 LTR7B 505 + 0 494 81436 108 0 10 57 0 38 12 0 24 29 0 2 82 1 0 26 0 1 52 14 13 26 2 0 14 chain 116417 chr4 191154276 + 85460656 85461992 L1PA5 6144 - 14 1357 32306 832 1 5 119 6 9 378 chain 106180 chr4 191154276 + 85461992 85463193 L1PA5 6144 + 3581 4785 35190 99 0 3 358 0 1 586 1 0 157 chain 179844 chr4 191154276 + 85465843 85468031 L1P3 4156 + 35 2230 21008 216 1 0 69 1 0 569 12 11 310 0 4 347 0 1 207 0 4 391 1 2 64 chain 328070 chr4 191154276 + 85472161 85477342 L1PA11 4918 + 3 4475 12275 39 2 0 27 23 20 26 1 0 14 2 0 52 1 0 32 2 0 5 3 2 394 5 6 55 379 4 117 1 2 414 0 2 195 6 0 136 0 1 187 3 4 76 4 1 138 0 3 26 0 2 117 0 1 8 11 3 96 1 0 24 1 0 8 6 2 18 18 26 52 4 1 63 8 7 99 1 0 4 0 1 4 25 24 89 2 0 144 0 1 116 7 1 142 0 5 149 3 0 45 306 0 56 1 0 15 0 4 359 6 7 11 0 1 4 1 0 224 2 3 5 1 0 409 8 4 58 2 1 13 2 0 68 chain 3839 chr4 191154276 + 85479697 85479748 L1PA7 6471 + 6419 6467 209798 40 3 0 8 chain 19224 chr4 191154276 + 85484480 85484726 L1P3 4156 - 17 261 129454 23 3 2 7 2 0 207 0 1 4 chain 24348 chr4 191154276 + 85508795 85509267 LTR49 580 - 8 580 108383 32 114 113 24 0 102 130 9 6 33 1 0 46 5 8 78 chain 27828 chr4 191154276 + 85577902 85578258 THE1A 353 - 0 353 93591 182 3 0 60 1 0 26 0 1 84 chain 126916 chr4 191154276 + 85578258 85580149 THE1A-int 1579 - 0 1579 28835 71 0 1 225 317 0 204 4 0 223 0 1 105 0 1 201 0 1 177 0 3 250 0 1 70 0 1 44 chain 25305 chr4 191154276 + 85580149 85580500 THE1A 353 - 0 353 103198 17 0 1 184 15 17 24 2 1 19 0 1 4 2 1 84 chain 131414 chr4 191154276 + 85585688 85587268 LTR12C 1709 + 0 1709 27773 262 0 26 11 1 2 259 8 0 135 0 95 14 0 15 17 2 1 275 1 0 5 3 1 29 0 1 76 0 4 399 1 0 82 chain 26802 chr4 191154276 + 85623967 85624261 AluYf4 310 + 0 294 96978 294 chain 24688 chr4 191154276 + 85635817 85636131 AluY 311 + 0 304 106504 11 4 0 121 0 1 164 7 0 7 chain 24943 chr4 191154276 + 85638935 85639236 AluY 311 + 16 308 105085 116 0 1 110 10 0 65 chain 24160 chr4 191154276 + 85668716 85669034 THE1C 375 + 9 326 109432 176 11 10 131 chain 246461 chr4 191154276 + 85680005 85682710 L1PA3long 6157 - 1048 3753 16421 937 0 1 807 1 0 960 chain 96509 chr4 191154276 + 85682710 85683776 L1PA3long 6157 + 5091 6157 37668 1066 chain 26213 chr4 191154276 + 85684346 85684699 L1PA8 5853 + 5507 5853 99151 55 1 0 47 2 0 73 10 8 50 2 1 19 1 0 93 chain 8730 chr4 191154276 + 85691526 85691661 Tigger1 2417 + 2281 2416 167028 34 0 1 44 16 15 41 chain 24355 chr4 191154276 + 85703536 85703909 L1PA8 5853 - 0 369 108344 92 6 5 13 1 0 43 8 7 14 1 0 66 10 8 39 0 2 80 chain 12807 chr4 191154276 + 85732934 85733216 Tigger4b 360 - 0 360 149029 24 4 4 12 8 24 18 2 0 6 8 30 86 14 38 37 0 10 14 24 0 8 1 33 16 chain 19715 chr4 191154276 + 85747268 85747598 MER2 342 + 13 341 128051 43 28 24 63 9 13 49 4 0 10 12 14 112 chain 11542 chr4 191154276 + 85796008 85796151 Tigger3b 1229 - 89 237 154136 67 0 1 60 0 4 16 chain 5306 chr4 191154276 + 85807544 85807605 U6 107 - 6 67 191950 61 chain 10983 chr4 191154276 + 85826094 85826223 LTR13 1007 + 878 1007 156259 129 chain 12259 chr4 191154276 + 85827855 85828044 MER30 238 + 36 238 151159 20 6 11 39 4 15 78 3 0 39 chain 36049 chr4 191154276 + 85871098 85871563 L1PA8 5853 + 5391 5849 74835 173 2 1 45 2 0 67 13 11 56 2 1 15 1 0 89 chain 298379 chr4 191154276 + 85901847 85905253 L1PA5 6144 - 2 3423 13511 157 0 1 340 0 14 253 2 0 134 0 1 1616 0 1 6 1 2 373 1 2 155 3 0 65 0 1 300 chain 531542 chr4 191154276 + 85908359 85914530 L1PA4 6152 + 0 6140 4015 142 8 22 448 35 0 494 1 0 609 0 1 226 1 0 377 0 1 929 0 4 70 33 0 186 0 1 1390 0 1 373 1 0 30 0 4 257 0 12 93 0 3 22 6 5 440 chain 4554 chr4 191154276 + 85915811 85915866 MER30 238 - 5 63 200176 34 0 3 21 chain 6333 chr4 191154276 + 85915884 85916004 MER30 238 + 60 198 182520 38 4 1 7 3 0 8 11 35 49 chain 105323 chr4 191154276 + 85934181 85935368 L1PA4 6152 - 11 1198 35418 1187 chain 12672 chr4 191154276 + 85943841 85944001 THE1B 368 - 207 366 149565 102 2 1 56 chain 7053 chr4 191154276 + 85944454 85944777 MER31B 477 - 49 250 177084 11 1 0 13 38 45 48 9 11 20 9 8 13 134 5 27 chain 19242 chr4 191154276 + 85951471 85951787 LTR19A 502 + 112 502 129408 16 6 9 42 0 74 176 41 38 35 chain 86596 chr4 191154276 + 85954614 85955767 MER11B 1079 + 6 1079 40931 214 0 5 182 6 5 260 0 4 94 92 4 276 1 0 14 1 2 13 chain 7233 chr4 191154276 + 85955375 85955461 MER11B 1079 + 685 770 175873 81 1 0 4 chain 503325 chr4 191154276 + 85964498 85970841 L1PA7 6471 + 0 6467 6651 196 3 2 583 2 1 38 0 1 4 2 1 674 5 6 196 1 2 55 0 1 400 0 5 476 5 4 130 0 103 606 0 2 7 2 0 4 1 0 115 1 0 527 0 1 95 0 1 21 1 2 403 14 10 56 4 0 71 0 1 147 0 1 7 7 6 276 0 1 36 0 8 332 0 3 27 9 10 44 0 2 105 0 3 435 0 2 27 14 15 25 12 13 142 chain 27723 chr4 191154276 + 85989284 85989650 THE1B 368 - 0 368 93958 200 1 0 125 1 6 24 3 1 12 chain 27289 chr4 191154276 + 86009142 86009517 THE1C 375 + 0 373 95308 182 27 26 142 1 0 23 chain 26986 chr4 191154276 + 86011053 86011428 THE1C 375 + 2 375 96325 170 26 25 153 1 0 25 chain 2834 chr4 191154276 + 86019154 86019187 L1MD2 1676 - 192 225 228157 33 chain 5934 chr4 191154276 + 86032045 86032115 L1M1 2793 + 1056 1126 185837 70 chain 27344 chr4 191154276 + 86032581 86033021 L1M1 2793 + 781 1213 95129 21 2 1 28 2 0 8 1 0 56 3 1 6 1 0 71 4 2 5 0 2 21 1 0 142 9 10 25 14 13 20 chain 110911 chr4 191154276 + 86046803 86048533 HERVK22-int 3844 - 0 2443 33962 93 0 1 73 63 716 40 134 161 66 12 15 10 25 34 198 0 1 132 1 2 6 1 0 300 0 2 36 0 2 107 1 13 278 0 1 59 17 19 78 chain 106729 chr4 191154276 + 86050385 86051729 L1P3 4156 - 2806 4156 35052 535 0 9 484 1 0 29 13 12 32 1 0 249 chain 211328 chr4 191154276 + 86057772 86060187 L1PA5 6144 - 1044 3491 18412 55 0 1 340 4 9 43 2 1 288 3 0 354 0 24 36 0 2 268 1 0 198 2 1 36 1 7 784 chain 86866 chr4 191154276 + 86060187 86061190 L1PA5 6144 + 5133 6132 40762 726 0 3 137 8 1 132 chain 487952 chr4 191154276 + 86081819 86088116 L1PA7 6471 - 15 6465 7447 742 8 5 49 0 6 599 1 4 103 0 1 671 0 2 62 0 2 190 23 12 9 0 5 161 4 0 336 1 0 11 3 2 241 4 0 6 8 12 439 0 1 5 29 0 145 2 3 53 1 3 353 0 1 314 1 0 138 3 2 69 1 0 303 0 1 327 1 2 67 10 9 175 2 1 78 0 1 4 1 10 111 0 1 83 29 199 64 63 63 194 chain 13484 chr4 191154276 + 86102709 86103032 L1PB1 5432 - 2 298 146401 4 1 0 4 1 0 14 5 4 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 18 14 8 4 1 0 16 2 1 43 1 0 10 8 6 37 0 1 4 12 10 9 5 1 13 1 0 11 chain 500405 chr4 191154276 + 86110174 86117804 L1PA6 6164 - 4 6164 6812 431 5 4 259 1 3 86 0 2 67 1 0 476 6 6 26 0 1 544 0 1 245 0 6 496 1 5 194 0 3 114 1 2 277 0 1 577 1 0 108 20 26 117 1 0 228 1458 2 131 1 0 192 8 7 77 1 0 23 22 0 168 0 1 302 1 7 93 3 0 33 17 0 371 0 1 447 chain 130094 chr4 191154276 + 86114456 86115906 L1PA4 6152 + 4690 6141 27977 1313 0 1 137 chain 23688 chr4 191154276 + 86124288 86124570 AluY 311 + 15 300 112096 117 0 1 80 0 2 85 chain 113642 chr4 191154276 + 86124570 86126094 L1PA10 4194 + 1295 2849 33190 174 1 2 4 1 0 13 9 30 58 0 2 473 6 13 153 1 0 8 0 2 46 4 0 333 9 10 13 0 1 24 0 3 5 3 0 101 0 1 85 chain 38290 chr4 191154276 + 86128370 86129044 L1PB1 5432 + 4819 5420 71721 294 46 4 15 0 1 13 1 0 10 6 2 12 4 1 48 1 0 12 6 5 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 4 12 10 24 1 0 21 1 0 13 1 0 16 chain 30981 chr4 191154276 + 86131660 86132146 LTR3B_ 500 + 0 478 82547 78 2 1 78 0 2 143 4 0 31 19 18 28 47 43 56 chain 21708 chr4 191154276 + 86134320 86134735 L1PA14 3548 - 106 498 121361 17 0 1 9 1 0 7 35 31 34 16 11 61 13 15 37 1 0 73 7 0 9 1 0 6 3 0 16 4 0 65 chain 76533 chr4 191154276 + 86137298 86138380 MER11A 1151 + 0 1135 45195 79 11 19 130 1 0 61 14 11 26 0 2 60 0 1 51 5 6 32 6 7 48 3 5 22 1 0 98 4 0 24 6 8 53 0 4 58 1 0 13 7 41 49 0 9 168 7 6 44 chain 191979 chr4 191154276 + 86158372 86162425 L1PB1 5432 - 19 2871 19869 9 1 0 13 1 0 21 1 0 18 0 1 4 3 1 13 2 1 10 2 0 8 24 13 5 1 0 15 1 0 43 2 1 16 2 1 53 40 32 19 17 13 190 5 14 83 2 5 91 6 7 81 4 0 10 7 8 68 16 50 27 4 5 9 0 1 248 0 2 36 0 4 24 1 2 71 0 5 94 6 7 222 61 21 20 6 7 171 1198 0 566 5 6 15 6 10 81 4 0 6 0 2 12 0 3 232 0 5 21 chain 71816 chr4 191154276 + 86160281 86161180 L1P3 4156 + 3240 4139 47559 260 1 0 11 7 5 30 6 10 265 4 5 231 0 1 49 2 0 7 2 1 24 chain 24964 chr4 191154276 + 86204681 86204965 L1PA7 6471 + 5794 6078 104985 284 chain 31603 chr4 191154276 + 86204965 86205357 L1PA7 6471 + 6080 6470 81480 239 1 2 130 0 1 7 2 0 5 2 0 6 chain 41582 chr4 191154276 + 86215875 86216343 L1PA7 6471 + 5991 6459 67183 468 chain 3234 chr4 191154276 + 86243639 86243674 tRNA-Glu-GAG 37 + 0 35 220365 35 chain 314231 chr4 191154276 + 86245805 86249433 L1PA4 6152 + 2519 6143 12840 302 11 2 4 0 1 598 0 1 1163 12 16 694 0 1 606 5 0 41 0 2 28 0 1 6 6 0 12 0 5 36 0 1 104 chain 5686 chr4 191154276 + 86265059 86265130 MSTA 426 - 2 73 188234 71 chain 82996 chr4 191154276 + 86268932 86269860 L1PA4 6152 - 5 935 42337 334 0 2 594 chain 183910 chr4 191154276 + 86270577 86273192 L1PB1 5432 - 23 2589 20598 5 1 0 13 1 0 21 1 0 23 3 1 14 9 6 12 37 13 19 6 5 41 1 0 15 2 1 42 26 20 14 1 0 6 1 0 24 1 0 5 14 13 163 5 6 222 0 2 69 17 5 140 0 1 6 3 2 115 0 1 399 0 3 6 7 4 375 10 11 79 0 5 112 0 1 175 2 1 30 6 4 316 chain 28008 chr4 191154276 + 86273278 86273606 LTR17 781 - 454 781 92973 67 1 0 260 chain 180589 chr4 191154276 + 86273920 86276047 HERV17-int 4347 - 0 4068 20935 220 0 2 1219 0 1507 44 1 0 29 0 4 347 2 1 178 0 1 6 2 1 23 0 430 56 chain 10947 chr4 191154276 + 86287925 86288050 L1PA7 6471 - 2 127 156413 125 chain 7157 chr4 191154276 + 86288764 86289027 LTR48B 642 - 45 309 176364 40 1 0 7 1 0 18 23 25 11 15 15 20 9 11 15 73 72 30 chain 160200 chr4 191154276 + 86301176 86303032 L1PA5 6144 + 4263 6139 23308 472 2 0 464 1 0 95 0 3 50 0 1 72 0 19 700 chain 29350 chr4 191154276 + 86310522 86310830 AluYa5 310 - 2 310 87292 308 chain 18171 chr4 191154276 + 86318269 86318463 L1HS 6032 - 212 406 132405 194 chain 19639 chr4 191154276 + 86318463 86318672 L1HS 6032 + 5821 6030 128284 209 chain 5207 chr4 191154276 + 86368907 86369140 LTR16A1 462 - 14 262 192951 32 158 173 43 chain 16608 chr4 191154276 + 86415341 86415549 L1PA8A 6298 - 17 229 136642 107 0 5 58 1 0 42 chain 521400 chr4 191154276 + 86421870 86428032 L1PA6 6164 - 4 6164 5017 9 6 0 135 8 0 9 1 5 155 0 1 23 10 5 502 0 4 255 2 1 690 0 4 329 0 2 328 0 1 178 0 1 333 0 1 704 2 0 159 0 1 461 1 0 608 3 0 5 0 3 16 2 0 140 1 4 37 0 1 1050 chain 25277 chr4 191154276 + 86430225 86430498 L1PA3long 6157 + 5874 6147 103334 273 chain 36714 chr4 191154276 + 86439542 86440178 L1PB1 5432 - 11 614 73936 14 4 3 13 1 0 21 1 0 26 2 0 12 8 5 14 10 1 16 19 15 44 1 0 16 2 1 51 2 0 11 16 11 13 1 0 16 17 15 285 chain 9190 chr4 191154276 + 86440178 86440293 L1PB1 5432 + 4686 4801 164604 28 2 1 23 0 1 62 chain 29318 chr4 191154276 + 86462295 86462605 AluYa5 310 - 0 310 87452 310 chain 9542 chr4 191154276 + 86474520 86474704 LTR12D 1347 - 603 907 162873 38 63 183 83 chain 6387 chr4 191154276 + 86474865 86474943 L1PREC2 3366 - 3032 3109 182127 45 1 0 32 chain 4235 chr4 191154276 + 86485350 86485396 L1PA5 6144 - 257 303 204097 46 chain 19734 chr4 191154276 + 86485438 86485704 L1PA3long 6157 + 5890 6157 128001 14 12 11 100 0 1 28 0 1 112 chain 104322 chr4 191154276 + 86504603 86505754 L1PA3long 6157 + 5004 6157 35663 307 0 1 468 0 1 376 chain 533430 chr4 191154276 + 86543252 86549378 L1PA4 6152 - 1 6152 3784 161 0 1 803 0 1 408 1 7 418 0 4 163 0 1 121 0 1 522 0 13 214 0 1 152 0 1 574 6 7 157 0 1 692 5 0 491 0 1 91 0 2 567 0 3 85 1 0 26 31 25 437 chain 30427 chr4 191154276 + 86564392 86564710 AluYb9 318 - 0 318 83639 318 chain 545748 chr4 191154276 + 86582682 86588796 L1PA3long 6157 - 10 6151 1982 512 6 7 2010 0 8 439 1 0 481 3 2 740 1 0 622 1 23 116 2 1 1180 chain 3531 chr4 191154276 + 86593269 86593313 MER121 330 - 175 218 214865 19 1 0 24 chain 6086 chr4 191154276 + 86618593 86618658 L1PA4 6152 + 6085 6150 184530 65 chain 21867 chr4 191154276 + 86641168 86641411 L1PA5 6144 + 5885 6128 120763 243 chain 67185 chr4 191154276 + 86678391 86679154 L1PA5 6144 - 20 783 49574 763 chain 2929 chr4 191154276 + 86718625 86718676 LTR41 747 - 649 701 226518 24 5 6 22 chain 23691 chr4 191154276 + 86728271 86728557 L1PA7 6471 - 8 294 112077 144 1 0 10 1 2 130 chain 19872 chr4 191154276 + 86735010 86735373 THE1B 368 - 0 368 127586 113 73 78 60 5 6 62 1 2 32 2 0 15 chain 10974 chr4 191154276 + 86741044 86741192 MSTA 426 + 265 414 156300 114 5 6 29 chain 459480 chr4 191154276 + 86769343 86774763 L1PA6 6164 - 4 6164 8423 393 0 3 17 2 738 60 1 0 1856 0 1 684 1 0 27 0 1 46 0 2 885 0 1 66 0 1 356 1 0 47 1 0 379 1 0 597 chain 27299 chr4 191154276 + 86783308 86783739 MER57A1 433 - 5 433 95280 71 0 1 34 49 50 175 27 22 75 chain 240206 chr4 191154276 + 86812370 86814932 L1HS 6032 - 1861 4424 16759 1979 0 1 583 chain 30768 chr4 191154276 + 86814933 86815265 L1HS 6032 + 5700 6032 82918 332 chain 25890 chr4 191154276 + 86822975 86823330 L1PA8 5853 - 0 349 100480 18 0 1 74 1 0 19 2 1 52 15 13 67 2 0 44 1 0 60 chain 77625 chr4 191154276 + 86836578 86837542 L1PA7 6471 - 5 976 44682 8 1 0 664 0 1 36 0 1 56 0 2 44 10 11 25 13 16 107 chain 4126 chr4 191154276 + 86837546 86837591 L1PA7 6471 - 3522 3567 205565 45 chain 73595 chr4 191154276 + 86838067 86838875 L1PA3long 6157 - 0 809 46734 757 0 1 51 chain 68136 chr4 191154276 + 86864616 86865416 L1PA7 6471 - 3 803 49187 112 1 0 56 1 2 630 chain 3195 chr4 191154276 + 86875723 86875759 U6 107 + 0 36 221013 36 chain 59771 chr4 191154276 + 86877558 86878341 LTR17 781 - 0 781 52947 193 26 1 54 1 5 12 0 1 79 0 8 4 0 1 14 5 15 67 1 0 327 chain 39565 chr4 191154276 + 86880138 86880660 MER41A 554 - 35 554 69942 88 1 0 233 1 0 8 8 9 60 3 1 120 chain 6095 chr4 191154276 + 86885058 86885134 L1PA2 6032 - 5 81 184456 76 chain 28791 chr4 191154276 + 86886218 86886588 THE1B 368 - 0 368 89939 77 3 0 119 2 0 127 0 5 27 2 0 13 chain 141589 chr4 191154276 + 86941663 86943325 LTR12C 1709 - 0 1709 25883 333 0 2 33 0 1 112 0 4 90 0 4 12 4 2 4 1 0 235 0 40 570 1 0 267 chain 104660 chr4 191154276 + 86962332 86963641 L1PA8 5853 + 4542 5853 35575 287 1 2 144 0 12 22 2 0 172 0 4 379 1 0 21 7 0 23 2 0 71 1 0 11 1 0 34 1 2 14 2 1 16 4 3 93 chain 3844 chr4 191154276 + 86967619 86967661 L1P1 4361 - 106 148 209723 42 chain 12238 chr4 191154276 + 86986690 86986841 L1PA7 6471 - 4 152 151262 6 3 0 142 chain 554344 chr4 191154276 + 86991543 86997572 L1PA2 6032 - 0 6031 906 1274 0 1 2565 0 1 2190 chain 289059 chr4 191154276 + 87031835 87035806 L1PA10 4194 - 48 4019 14081 29 3 1 181 0 4 139 0 3 174 7 5 17 46 47 149 0 1 84 1 0 183 1 0 61 0 1 94 1 7 34 0 1 166 0 7 49 0 2 32 0 4 15 6 0 15 0 1 493 0 1 159 0 1 132 0 1 32 5 1 14 1 0 12 0 1 98 11 12 555 0 3 254 0 4 7 4 0 376 2 0 81 1 0 5 25 52 11 2 0 12 66 39 13 2 0 19 13 11 9 2 0 12 19 13 8 3 0 12 2 0 12 chain 3901 chr4 191154276 + 87042793 87043078 L1MA8 2339 - 20 249 208823 20 53 33 10 1 0 8 0 3 7 50 45 30 77 46 21 2 0 6 chain 540772 chr4 191154276 + 87055826 87061846 L1PA3long 6157 + 0 6157 2696 70 1 2 54 1 0 27 0 1 584 1 0 38 0 128 287 0 2 762 0 1 740 0 1 1221 1 0 4 0 1 439 0 4 834 0 1 956 chain 54295 chr4 191154276 + 87087966 87088706 L1P3 4156 + 3392 4137 56164 90 3 1 11 0 1 25 0 1 10 3 7 71 1 0 122 0 6 96 1 0 270 15 12 22 chain 24359 chr4 191154276 + 87089232 87092499 L1PA3long 6157 + 6 3265 13255 203 0 1 1651 0 1 68 0 1 11 0 2 418 15 2 901 chain 125024 chr4 191154276 + 87092509 87093887 L1PA3long 6157 + 4775 6157 29385 535 0 4 843 chain 30562 chr4 191154276 + 87093951 87094352 L1PA10 4194 + 3768 4161 83276 145 1 0 169 3 0 34 3 0 34 1 0 11 chain 102296 chr4 191154276 + 87104293 87105429 L1PA4 6152 - 0 1136 36195 1136 chain 515975 chr4 191154276 + 87108935 87115327 L1PA7 6471 - 13 6439 5575 131 1 18 103 0 2 72 0 1 87 0 1 63 0 1 358 1 0 18 0 4 240 9 0 170 2 11 347 5 0 86 0 1 336 0 1 43 0 1 480 0 2 352 1 0 43 10 12 326 0 1 4 1 0 455 0 20 27 30 0 122 14 0 1305 0 4 99 2 3 22 4 5 73 0 19 381 1 0 52 1 0 97 2 1 50 11 12 33 0 1 48 6 14 268 chain 160423 chr4 191154276 + 87116730 87118671 L1PA7 6471 - 5 1959 23284 155 1 3 172 9 10 315 0 1 89 0 3 18 0 2 75 4 3 142 0 5 45 1 0 526 0 1 131 7 3 95 0 4 156 chain 175028 chr4 191154276 + 87127200 87129131 L1PA3long 6157 - 0 1931 21457 1931 chain 6263 chr4 191154276 + 87129132 87129972 L1PA3long 6157 + 3383 4231 13255 137 0 1 697 0 7 6 chain 3453 chr4 191154276 + 87153298 87153377 MER58A 224 - 138 221 216158 4 1 0 36 23 28 15 chain 466135 chr4 191154276 + 87158046 87164302 L1PA8A 6298 - 11 6264 8182 94 2 1 8 1 0 96 20 0 124 0 5 460 2 10 13 0 2 77 0 1 382 1 0 189 1 0 132 0 1 431 0 1 86 1 0 211 0 1 80 0 2 5 0 4 6 13 7 160 1 0 306 12 5 32 0 6 8 2 0 56 0 1 97 0 3 499 1 8 64 0 4 98 1 0 6 1 0 4 0 2 235 0 3 440 0 9 178 0 1 364 1 4 41 7 2 53 0 1 26 1 0 1 1 0 15 16 4 345 1 2 67 0 5 237 291 0 12 1 278 17 3 2 9 1 0 15 6 0 11 53 64 18 1 0 6 chain 338487 chr4 191154276 + 87172332 87175990 L1PA2 6032 - 5 3667 11942 841 0 4 2817 chain 14761 chr4 191154276 + 87193153 87193347 L1PA16 3655 - 68 259 142063 9 3 0 182 chain 5957 chr4 191154276 + 87204082 87204210 MER67C 710 + 497 624 185626 54 44 43 30 chain 7395 chr4 191154276 + 87207600 87207737 MIR 256 - 20 153 174794 43 0 1 17 34 29 43 chain 16546 chr4 191154276 + 87209329 87209507 L1PA3long 6157 - 0 178 136808 178 chain 28765 chr4 191154276 + 87225540 87225844 AluYk11 308 - 4 308 90046 304 chain 32520 chr4 191154276 + 87241667 87242029 L1PA3long 6157 - 856 1219 79836 209 0 1 153 chain 79058 chr4 191154276 + 87242029 87242888 L1PA3long 6157 + 5288 6147 44027 859 chain 66100 chr4 191154276 + 87249291 87250170 L1PA8 5853 + 4981 5853 50054 28 2 0 16 0 1 56 0 2 58 2 1 417 1 0 49 2 0 73 1 0 48 20 18 12 1 0 93 chain 8024 chr4 191154276 + 87288663 87288758 LTR47A 437 - 13 108 170917 95 chain 179805 chr4 191154276 + 87293046 87295568 L1PA7 6471 + 2818 6469 21011 168 1 0 159 379 0 305 2 1508 656 0 4 519 2 0 170 1 2 160 chain 28568 chr4 191154276 + 87298897 87299258 MLT2A1 477 - 0 477 90878 50 1 0 4 0 117 106 0 1 19 0 1 9 5 2 83 0 1 84 chain 43483 chr4 191154276 + 87300564 87301074 MER9a3 513 + 0 510 64835 13 0 1 242 5 4 250 chain 8984 chr4 191154276 + 87317687 87317821 MSTA 426 - 0 135 165690 101 13 14 20 chain 512097 chr4 191154276 + 87329056 87335200 L1PA6 6164 - 2 6160 5968 7 5 0 119 0 1 42 1 3 1161 0 2 148 1 0 682 4 5 294 1 0 408 1 0 45 1 5 17 0 1 44 12 11 370 3 2 311 0 2 10 0 1 134 3 4 1529 0 17 338 8 0 445 chain 8805 chr4 191154276 + 87339845 87339960 L1PB2 3958 + 3726 3838 166620 27 2 0 22 1 0 63 chain 5498 chr4 191154276 + 87349100 87349293 LTR54 533 - 0 204 190053 21 112 123 60 chain 29981 chr4 191154276 + 87369800 87370329 MER1A 529 - 6 529 84864 58 26 22 25 1 0 227 0 2 54 7 17 13 53 25 29 19 34 17 chain 413098 chr4 191154276 + 87374985 87381061 L1PB1 5432 + 19 5424 9719 382 2 0 9 0 2 268 45 22 6 0 6 41 0 4 72 0 1 191 11 10 156 1 0 190 1 3 167 25 8 908 1 0 29 7 0 6 8 15 327 7 6 506 1 2 274 7 6 68 1 2 29 7 8 219 6 5 54 0 1 11 609 0 322 1 3 117 15 19 56 1 3 81 4 0 160 0 8 144 2 1 45 0 5 106 5 0 10 12 1 24 1 0 9 1 0 10 5 1 9 2 0 53 2 1 16 1 0 43 1 0 16 14 1 24 15 12 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 39615 chr4 191154276 + 87381676 87382185 MER9a3 513 + 0 513 69871 18 0 2 108 1 2 47 0 1 78 1 0 177 2 3 77 chain 348883 chr4 191154276 + 87383137 87387624 HERVK9-int 4720 + 134 4324 11641 16 1 0 90 0 7 7 25 10 1672 0 1 299 0 2 150 0 1 113 0 16 171 307 0 607 22 19 347 10 10 263 0 2 387 chain 6302 chr4 191154276 + 87387631 87387708 MER9a3 513 + 436 513 182785 77 chain 30498 chr4 191154276 + 87395923 87396367 LTR7 482 + 0 470 83433 100 21 15 118 0 31 41 0 1 57 3 4 52 13 14 26 2 0 11 chain 291700 chr4 191154276 + 87396382 87399985 HERVH-int 3825 + 0 3825 13923 280 0 2 51 1 0 32 14 15 90 0 60 25 0 3 12 1 0 10 1 0 23 0 151 25 1 0 59 0 3 29 0 7 25 0 1 195 27 29 303 10 0 40 1 0 102 5 0 207 0 1 306 12 17 411 0 1 558 0 1 79 0 3 252 34 35 382 chain 30985 chr4 191154276 + 87401216 87401666 LTR7 482 + 0 475 82540 100 21 15 128 8 6 15 0 31 12 3 4 108 13 14 42 chain 34463 chr4 191154276 + 87414041 87414468 MER57A1 433 + 0 433 76972 277 0 6 150 chain 115767 chr4 191154276 + 87436012 87437784 L1PB1 5432 - 2 1703 32538 4 1 0 8 1 0 11 5 4 10 1 0 23 1 0 24 2 0 14 9 6 18 44 29 34 9 8 15 4 3 51 23 17 5 1 0 11 8 4 16 0 14 18 4 0 6 1 5 28 0 1 411 4 0 181 50 6 478 6 5 33 0 1 199 chain 49516 chr4 191154276 + 87448496 87449138 L1PA16 3655 + 2924 3574 59379 58 0 2 6 1 0 211 1 0 90 3 1 80 0 9 26 0 1 166 chain 3210 chr4 191154276 + 87458588 87458668 L1MC4 1079 + 23 96 220734 8 7 0 24 19 19 22 chain 23308 chr4 191154276 + 87467926 87468222 AluY 311 + 0 291 114156 25 1 0 107 0 1 90 0 4 54 9 0 10 chain 99110 chr4 191154276 + 87468291 87469596 LTR12C 1709 + 0 1709 36996 107 0 1 95 10 31 22 7 8 27 4 5 42 10 51 98 4 5 70 12 23 69 0 278 171 0 47 74 0 4 330 1 0 69 1 0 82 chain 9078 chr4 191154276 + 87490788 87490900 L1PB4 2604 + 2421 2533 165172 112 chain 66892 chr4 191154276 + 87495064 87495791 L1PA3long 6157 - 4 731 49686 727 chain 7562 chr4 191154276 + 87534380 87534473 MER68 562 - 327 420 173785 93 chain 12532 chr4 191154276 + 87538590 87538733 L1PA4 6152 - 11 154 150112 143 chain 27141 chr4 191154276 + 87539905 87540219 L1P1 4361 - 43 354 95789 13 1 0 155 1 0 19 1 0 124 chain 3964 chr4 191154276 + 87548398 87548448 L1MB2 1706 + 1646 1695 207922 44 1 0 5 chain 48375 chr4 191154276 + 87549656 87550173 L1HS 6032 - 2 519 60198 517 chain 45636 chr4 191154276 + 87550173 87550659 L1HS 6032 + 4941 5427 62363 486 chain 291821 chr4 191154276 + 87557749 87560981 L1PA3long 6157 + 2912 6146 13917 257 1 0 1124 0 2 760 6 5 250 0 4 510 1 0 91 1 0 231 chain 33074 chr4 191154276 + 87575161 87575534 L1P1 4361 + 2968 3339 77548 197 1 0 6 1 0 168 chain 257454 chr4 191154276 + 87575534 87578512 L1P1 4361 - 1354 4357 15849 227 0 4 1940 0 17 625 1 0 116 10 15 59 chain 15454 chr4 191154276 + 87644439 87644691 MER1B 344 + 64 344 140038 17 18 22 75 8 25 63 12 19 59 chain 511323 chr4 191154276 + 87645975 87652087 L1PA6 6164 - 2 6160 6038 182 5 0 5 0 5 1466 0 3 129 0 4 1780 0 1 253 26 0 472 1 2 67 0 1 299 7 8 440 0 17 53 0 1 150 0 17 119 0 1 4 8 30 341 0 3 305 chain 19424 chr4 191154276 + 87660452 87660765 THE1B 368 - 20 366 128886 17 2 0 78 34 55 27 2 1 98 13 28 42 chain 122088 chr4 191154276 + 87660772 87662374 THE1B-int 1605 - 8 1605 30354 198 1 0 62 2 0 156 4 5 244 1 2 417 0 1 55 0 25 158 25 5 20 11 0 220 4 5 24 chain 9053 chr4 191154276 + 87695882 87695984 L1PA5 6144 - 13 115 165297 102 chain 17615 chr4 191154276 + 87700382 87700586 AluY 311 + 96 299 133950 36 2 1 166 chain 417843 chr4 191154276 + 87712026 87717199 L1PA6 6164 + 0 6162 9588 394 33 34 21 8 0 118 1 0 220 0 17 99 0 4 347 1 0 283 7 8 190 3 1 57 0 1 409 0 1 121 0 2 72 9 13 645 1 6 121 5 6 50 0 4 14 0 944 154 8 14 797 0 5 25 5 6 111 6 10 838 chain 123917 chr4 191154276 + 87782782 87784149 L1PA4 6152 + 4778 6145 29726 1367 chain 478227 chr4 191154276 + 87785005 87790288 L1PA3long 6157 + 734 6156 7793 47 0 128 2261 0 2 882 0 1 1233 0 4 12 0 4 848 chain 142441 chr4 191154276 + 87805856 87807428 L1PA5 6144 - 1001 2577 25736 129 1 0 212 0 5 1230 chain 87417 chr4 191154276 + 87807428 87808411 L1PA5 6144 + 5142 6129 40563 155 0 4 828 chain 12285 chr4 191154276 + 87824394 87824550 AluSc 308 + 12 167 151056 111 1 0 44 chain 13136 chr4 191154276 + 87824650 87825125 LTR12D 1347 - 138 864 147702 75 158 382 25 49 0 15 15 18 28 41 5 16 0 109 53 chain 3570 chr4 191154276 + 87825125 87825166 LTR12D 1347 - 673 714 192791 41 chain 22927 chr4 191154276 + 87836670 87836949 AluSp 311 + 16 291 115979 87 4 0 188 chain 3420 chr4 191154276 + 87839910 87839946 MLT2B3 573 - 0 36 216772 36 chain 5564 chr4 191154276 + 87843181 87843250 LTR37A 408 - 73 142 189446 69 chain 4298 chr4 191154276 + 87847887 87847938 LTR32 486 - 412 463 203245 51 chain 9850 chr4 191154276 + 87848086 87848244 MER58A 224 + 50 211 161344 25 27 30 106 chain 11246 chr4 191154276 + 87875480 87875961 Tigger2a 444 - 116 310 155237 44 1 0 5 9 16 46 0 3 6 300 4 70 chain 3633 chr4 191154276 + 87897511 87897575 L1PA15 4387 + 4241 4306 213110 15 13 14 36 chain 5696 chr4 191154276 + 87903647 87903722 MLT1A0 366 + 74 150 188148 15 2 3 58 chain 142042 chr4 191154276 + 87909613 87911314 L1PA7 6471 + 4729 6450 25815 312 0 4 189 0 1 357 1 6 19 1 4 79 0 2 110 0 2 143 1 0 457 0 4 32 chain 129525 chr4 191154276 + 87916441 87917873 SVA_D 2077 + 16 2059 28202 11 5 1 535 0 40 85 0 40 159 0 535 637 chain 21343 chr4 191154276 + 87986241 87986574 THE1B 368 - 0 360 122711 77 3 0 18 0 6 15 0 1 26 15 20 31 3 2 28 10 14 71 0 15 36 chain 3293 chr4 191154276 + 88028843 88028878 MER58A 224 - 31 66 219129 35 chain 6964 chr4 191154276 + 88031669 88031759 L1MA3 4352 - 260 349 177717 66 1 0 23 chain 4352 chr4 191154276 + 88040087 88040276 MER51A 677 - 195 677 202568 19 33 45 14 81 362 42 chain 5337 chr4 191154276 + 88110760 88110820 MER51E 476 + 317 377 191674 60 chain 23580 chr4 191154276 + 88110896 88111208 AluSc8 310 + 0 307 112688 10 1 4 32 6 0 88 3 1 172 chain 8570 chr4 191154276 + 88118988 88119103 MER58A 224 - 11 125 167910 57 1 0 57 chain 4167 chr4 191154276 + 88121327 88121375 L1MB2 1706 + 911 959 205002 48 chain 10416 chr4 191154276 + 88121428 88121591 MER2 342 - 48 199 158612 78 18 6 67 chain 5943 chr4 191154276 + 88134002 88134070 Tigger3a 397 + 267 335 185761 68 chain 4217 chr4 191154276 + 88134816 88134862 MER58A 224 - 138 184 204333 46 chain 24761 chr4 191154276 + 88142273 88142569 AluSc5 308 + 6 303 106105 69 0 1 227 chain 43221 chr4 191154276 + 88168847 88169399 LTR12F 595 + 0 595 65146 103 0 1 41 2 0 28 0 42 132 0 2 246 chain 28498 chr4 191154276 + 88197494 88197819 L1PA7 6471 + 6144 6470 91188 44 0 1 281 chain 41744 chr4 191154276 + 88202714 88203289 MER41E 591 + 0 582 66971 28 0 3 89 0 1 4 2 1 263 16 14 17 5 4 40 0 7 111 chain 26166 chr4 191154276 + 88206422 88206774 THE1B 368 + 3 368 99340 41 0 15 107 7 6 20 2 0 119 0 1 56 chain 80235 chr4 191154276 + 88212161 88213058 MER11D 897 - 0 897 43491 897 chain 7866 chr4 191154276 + 88214603 88214721 Tigger3b 1229 + 728 844 171899 42 11 9 65 chain 73086 chr4 191154276 + 88214721 88215733 MER11A 1151 - 0 1151 46991 163 6 7 60 0 1 37 16 21 19 0 19 7 0 7 125 0 1 145 0 1 94 8 26 124 4 0 64 1 0 52 8 0 24 9 108 46 chain 44857 chr4 191154276 + 88231958 88232589 MER41B 635 + 0 633 63224 93 1 0 32 1 2 332 33 34 10 10 11 119 chain 12224 chr4 191154276 + 88233416 88233562 LTR64 526 + 0 146 151324 146 chain 30158 chr4 191154276 + 88236173 88236564 MER51B 395 + 0 378 84313 39 13 0 188 2 3 15 1 0 133 chain 6920 chr4 191154276 + 88250346 88250529 MLT2C1 407 + 30 215 178042 61 32 34 19 48 48 23 chain 20890 chr4 191154276 + 88251923 88252284 THE1D 372 - 0 372 124320 81 6 8 58 1 0 25 5 6 5 3 0 13 6 10 34 5 12 24 12 16 6 3 0 74 chain 566831 chr4 191154276 + 88268275 88274298 L1HS 6032 - 0 6032 98 1719 2 10 4230 0 1 72 chain 42342 chr4 191154276 + 88282167 88283032 MER41A 554 + 0 554 66217 134 9 5 46 9 5 267 303 0 97 chain 15599 chr4 191154276 + 88289495 88289683 MER41-int 2638 + 2447 2636 139590 108 0 1 80 chain 44972 chr4 191154276 + 88289692 88290242 MER41A 554 + 0 547 63085 4 1 0 153 3 0 104 0 1 285 chain 72850 chr4 191154276 + 88305260 88306209 MER11A 1151 + 3 1145 47097 51 0 1 30 0 91 51 0 8 59 4 0 242 1 2 146 5 6 118 0 81 31 0 1 73 0 2 7 1 10 44 10 12 76 chain 119622 chr4 191154276 + 88316261 88317662 LTR12C 1709 - 0 1709 31171 331 0 29 121 0 4 107 2 0 6 1 0 84 0 278 749 chain 116517 chr4 191154276 + 88327670 88329334 HERVK14-int 1672 - 14 1671 32277 104 5 4 9 0 3 19 1 0 9 2 0 23 13 12 59 1 0 55 7 17 35 2 1 203 1 0 27 8 6 8 1 0 3 1 0 79 1 0 160 4 3 206 6 5 40 1 0 234 2 0 29 6 5 159 17 19 34 15 14 21 13 12 11 1 0 29 chain 4308 chr4 191154276 + 88333379 88333447 HY4 93 + 0 69 203112 12 9 10 47 chain 74865 chr4 191154276 + 88338990 88340011 MER11A 1151 + 0 1151 46080 58 0 101 129 10 6 32 0 2 60 2 1 41 13 14 73 11 0 21 0 1 143 20 23 40 0 4 70 6 40 292 chain 12144 chr4 191154276 + 88342678 88342836 LTR8 732 - 0 160 151633 106 1 3 51 chain 19122 chr4 191154276 + 88349469 88349842 L1MC1 2226 + 1662 2040 129766 27 29 33 120 8 6 6 1 0 32 16 5 26 1 0 28 19 35 15 2 0 10 0 2 33 chain 5614 chr4 191154276 + 88401227 88401314 HSMAR2 1300 - 1 92 188942 46 2 0 6 1 3 11 0 4 21 chain 532000 chr4 191154276 + 88404240 88410696 L1PA7 6471 - 1 6471 3961 604 0 2 195 1 0 45 0 3 648 4 8 10 1 0 119 0 15 819 0 1 897 0 4 37 0 1 156 0 1 240 56 24 20 0 1 1294 0 1 108 1 5 336 2 8 253 1 0 203 1 2 307 0 5 98 chain 11576 chr4 191154276 + 88429651 88429883 MER21A 919 - 655 853 154006 87 23 0 22 35 27 9 2 0 7 1 0 46 chain 3294 chr4 191154276 + 88430090 88430127 MER21B 843 - 162 199 219095 37 chain 15848 chr4 191154276 + 88453639 88454024 MLT1B 390 - 0 390 138804 159 120 116 5 1 0 5 1 0 14 25 35 35 4 5 16 chain 42634 chr4 191154276 + 88456984 88457584 PRIMA4_LTR 623 + 0 623 65857 38 3 6 133 11 34 44 6 8 41 9 0 84 0 1 51 1 2 111 0 2 68 chain 30851 chr4 191154276 + 88459965 88460296 L1PA3long 6157 - 952 1283 82610 331 chain 86133 chr4 191154276 + 88460296 88461252 L1PA3long 6157 + 5201 6157 41108 106 1 0 502 0 1 347 chain 5837 chr4 191154276 + 88482348 88482637 MLT1C 463 + 5 303 186793 25 16 27 44 170 169 28 1 0 5 chain 19306 chr4 191154276 + 88483897 88484104 L1HS 6032 - 2205 2412 128414 207 chain 206489 chr4 191154276 + 88484104 88486294 L1HS 6032 + 3843 6032 18755 2037 1 0 152 chain 9345 chr4 191154276 + 88491981 88492109 MER85 139 + 0 139 163829 79 0 1 16 6 16 27 chain 14311 chr4 191154276 + 88492624 88492939 L1PB1 5432 - 5 288 143527 4 1 0 5 1 0 14 1 0 12 1 0 22 1 0 12 80 62 15 1 0 45 1 0 17 1 0 50 2 0 11 5 1 13 chain 79157 chr4 191154276 + 88495093 88496036 L1PA7 6471 + 5493 6457 43977 9 1 0 91 0 1 28 0 7 69 1 3 363 0 12 381 chain 223941 chr4 191154276 + 88506369 88509274 L1PA8 5853 + 3113 5853 17658 297 0 1 543 0 1 255 0 1 196 10 0 17 5 0 21 150 0 35 6 4 523 0 2 75 0 2 192 0 2 282 1 0 46 2 0 70 2 1 11 1 0 54 1 0 16 2 1 92 chain 5496 chr4 191154276 + 88515765 88515848 L1PB1 5432 + 5349 5427 190083 21 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 224428 chr4 191154276 + 88516976 88520181 L1PB2 3958 - 120 3305 17628 63 2 1 21 2 0 74 1 0 62 1 0 44 6 9 10 2 0 5 11 12 86 3 0 12 2 0 8 3 0 57 17 11 56 2 0 82 4 6 8 2 0 5 0 7 141 0 1 133 1 0 183 2 3 28 25 24 201 0 1 102 1 0 115 1 0 260 19 10 155 3 0 5 17 20 54 2 0 187 2 1 101 0 3 21 5 6 31 0 2 152 3 1 7 7 0 62 36 43 134 0 1 191 7 5 6 0 2 154 chain 38771 chr4 191154276 + 88525591 88526026 L1PA4 6152 + 5697 6140 71051 309 0 7 81 0 1 45 chain 22986 chr4 191154276 + 88538610 88538904 AluSc 308 + 6 293 115685 21 0 1 182 0 1 75 9 0 7 chain 19511 chr4 191154276 + 88544427 88544699 L1PA16 3655 - 77 351 128622 144 18 20 110 chain 8198 chr4 191154276 + 88547902 88548059 MLT2D 439 + 0 147 169962 70 24 13 10 9 10 44 chain 15520 chr4 191154276 + 88548061 88548256 THE1B 368 - 2 194 139831 72 1 0 101 2 0 19 chain 13946 chr4 191154276 + 88556520 88556767 L1MA2 4263 - 149 383 144768 10 1 0 17 1 3 8 6 0 18 7 0 86 18 16 35 0 1 40 chain 457290 chr4 191154276 + 88557653 88563555 L1PA8 5853 + 50 5847 8499 22 2 0 10 49 0 7 11 20 35 0 5 156 0 4 372 0 3 76 0 1 112 0 38 77 0 1 200 0 1 230 0 1 108 0 1 5 142 0 477 5 6 382 1 4 77 1 5 45 2 0 27 0 1 310 1 0 472 0 2 563 0 22 30 1 0 4 7 8 244 0 1 125 1 0 360 1 2 304 1 3 9 0 1 518 2 1 26 16 13 31 17 15 55 2 1 8 2 1 52 2 1 19 1 0 87 chain 28993 chr4 191154276 + 88582362 88582673 AluYf4 310 - 0 310 89023 192 1 0 118 chain 35098 chr4 191154276 + 88588952 88589492 L1MA5A 2387 - 81 599 76051 11 1 0 63 25 7 10 3 0 26 5 4 30 10 8 28 0 5 6 1 0 75 1 0 245 chain 25314 chr4 191154276 + 88594058 88594439 THE1B 368 - 0 368 103156 100 0 1 67 2 0 28 1 0 9 27 1 97 6 21 44 chain 112932 chr4 191154276 + 88594445 88595928 THE1B-int 1605 - 6 1578 33393 194 1 0 143 0 1 61 1 2 53 1 3 282 13 70 23 4 5 311 14 42 382 chain 25307 chr4 191154276 + 88595962 88596307 THE1B 368 - 12 368 103186 159 2 0 28 1 0 84 1 0 20 6 21 44 chain 19608 chr4 191154276 + 88611934 88612296 THE1B 368 + 0 368 128367 47 83 82 43 2 1 133 6 14 48 chain 118926 chr4 191154276 + 88612296 88614327 THE1B-int 1605 + 0 1600 31445 12 20 22 93 0 1 4 1 0 232 470 0 66 2 27 252 2 3 320 9 15 95 3 7 110 0 1 340 chain 549925 chr4 191154276 + 88631530 88637551 L1PA2 6032 + 5 6029 1458 66 1 2 1747 1 0 357 0 1 1310 0 1 2013 0 1 526 chain 121980 chr4 191154276 + 88645874 88647538 THE1B-int 1605 + 0 1597 30392 141 54 0 212 1 2 74 40 22 148 5 0 15 0 1 109 1 8 439 9 10 416 chain 21447 chr4 191154276 + 88654166 88654505 THE1D 372 - 12 364 122344 20 1 0 100 0 52 9 44 1 6 0 4 11 0 1 148 chain 22154 chr4 191154276 + 88660182 88660420 L1PA2 6032 - 0 238 119576 238 chain 7615 chr4 191154276 + 88665105 88665196 HY3 101 - 1 92 173439 91 chain 3470 chr4 191154276 + 88666499 88666582 MER52D 1964 - 712 789 215824 32 35 29 16 chain 184647 chr4 191154276 + 88675248 88677363 L1PA5 6144 - 4 2120 20529 134 21 16 363 0 1 1275 0 4 305 0 1 17 chain 91383 chr4 191154276 + 88685412 88686501 L1PA7 6471 + 5380 6466 39167 117 0 1 123 11 10 828 3 0 7 chain 542962 chr4 191154276 + 88690245 88696372 L1PA4 6152 + 12 6143 2351 114 16 2 14 0 14 107 3 0 1928 0 1 123 1 0 114 0 3 205 0 1 489 2 0 2838 0 1 32 4 7 4 0 1 133 chain 21852 chr4 191154276 + 88712493 88712779 MER47A 366 - 0 296 120811 64 1 0 23 2 13 196 chain 317497 chr4 191154276 + 88716232 88719716 L1PA3long 6157 + 2670 6157 12702 174 0 1 1687 0 1 585 0 1 1038 chain 391604 chr4 191154276 + 88734804 88740336 L1PB1 5432 - 19 5352 10402 9 1 0 13 1 0 21 1 0 24 58 46 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 13 1 0 20 57 11 83 42 26 188 3 1 7 1 0 4 0 1 88 8 10 73 0 1 460 0 1 326 10 11 86 6 1 13 15 4 180 0 1 62 3 10 313 0 1 243 0 1 14 0 3 52 2 0 208 0 3 134 6 0 226 60 13 175 8 9 653 39 16 7 1 0 463 4 5 68 1 0 5 0 1 40 1 2 128 3 0 24 0 7 8 5 0 3 2 0 23 2 1 106 0 1 6 40 2 10 4 0 91 1 0 221 21 30 6 1 0 4 0 1 59 chain 3611 chr4 191154276 + 88738060 88738098 L1PB1 5432 - 2017 2055 213472 38 chain 24980 chr4 191154276 + 88747657 88748168 L1PA11 4918 - 289 752 104910 18 47 33 11 4 3 10 1 0 15 42 28 23 14 13 51 3 0 17 15 12 64 11 0 165 chain 20467 chr4 191154276 + 88772809 88773027 L1PA2 6032 + 5814 6032 125713 218 chain 29375 chr4 191154276 + 88775647 88775952 AluYb8 318 - 13 318 87187 305 chain 2715 chr4 191154276 + 88778154 88778219 LTR82B 718 + 393 455 229956 15 18 16 14 1 0 17 chain 93897 chr4 191154276 + 88783914 88785264 LTR12C 1709 - 0 1593 38385 77 12 11 81 0 102 134 1 0 73 55 24 88 8 55 227 0 1 4 0 119 105 3 4 91 11 21 21 15 7 46 1 0 4 0 1 108 2 1 5 0 2 36 0 1 56 0 1 34 0 1 52 chain 17995 chr4 191154276 + 88785469 88785789 MER61A 341 - 2 341 132872 45 14 16 28 62 79 171 chain 235172 chr4 191154276 + 88809719 88816567 L1PA8A 6298 + 3313 6291 17020 38 3 4 36 2 1 231 1324 19 101 9 12 588 1 5 175 1 2 298 1 0 159 1 3 195 2572 0 150 1 2 845 6 0 7 2 9 17 4 0 81 chain 80039 chr4 191154276 + 88810034 88811080 MER11B 1079 - 5 1079 43573 19 11 0 24 0 1 150 0 1 28 1 0 78 5 7 219 6 5 4 0 1 17 0 16 170 1 18 86 0 5 79 2 1 51 1 0 94 chain 8915 chr4 191154276 + 88811121 88811248 MER11B 1079 + 962 1079 166066 71 0 1 21 11 0 24 chain 7811 chr4 191154276 + 88811248 88811336 L1P3 4156 - 405 493 172240 88 chain 3257 chr4 191154276 + 88828805 88829022 MLT1C 463 - 80 301 219820 28 163 167 26 chain 29547 chr4 191154276 + 88838902 88839292 LTR7 482 + 0 473 86426 86 0 50 88 8 40 41 0 1 167 chain 38137 chr4 191154276 + 88842954 88843404 LTR7 482 + 0 482 71936 57 2 0 203 0 31 14 0 1 113 12 14 49 chain 297514 chr4 191154276 + 88843406 88847049 HERVH-int 3825 + 0 3816 13554 212 0 11 9 0 2 298 5 0 38 2 1 9 1 0 9 4 0 8 13 7 14 1 0 13 47 0 7 0 20 62 21 0 9 2 1 49 1 0 450 16 1 211 0 1 243 4 31 290 0 4 291 0 1 818 8 218 101 3 0 6 1 4 367 chain 58189 chr4 191154276 + 88850858 88851553 L1PA7 6471 - 2 699 53874 10 3 0 48 0 2 550 0 3 84 chain 14539 chr4 191154276 + 88855490 88855672 MER30 238 - 6 200 142764 108 4 16 70 chain 37222 chr4 191154276 + 88857073 88857520 LTR7 482 - 0 482 73204 49 12 14 124 0 31 38 0 1 38 0 1 186 chain 7702 chr4 191154276 + 88879710 88879803 MSTC 436 + 342 436 172922 81 0 1 12 chain 4134 chr4 191154276 + 88900249 88900304 MER3 215 + 77 131 205443 28 1 0 26 chain 3389 chr4 191154276 + 88906928 88907031 LTR41B 718 - 568 667 217318 36 53 49 14 chain 22452 chr4 191154276 + 88914258 88914938 THE1C 375 + 8 375 118236 53 0 1 81 326 11 18 57 59 119 1 0 25 chain 24669 chr4 191154276 + 88920398 88920758 THE1D 372 - 0 372 106620 31 10 9 139 0 1 5 22 24 81 0 10 72 chain 5370 chr4 191154276 + 88927521 88927592 MLT1B 390 + 315 390 191308 19 0 4 52 chain 22589 chr4 191154276 + 88937044 88937354 MER1B 344 - 0 314 117637 59 18 26 42 4 0 187 chain 111628 chr4 191154276 + 88947195 88948809 THE1D-int 1627 + 2 1627 33765 10 0 2 20 5 3 228 6 7 211 6 3 149 43 42 23 4 7 12 11 5 27 10 25 8 15 0 26 3 4 162 9 10 274 0 18 7 8 0 12 0 3 170 4 6 151 chain 28910 chr4 191154276 + 88963276 88963641 THE1B 368 - 0 366 89418 126 0 3 39 2 0 27 1 0 142 0 1 28 chain 24221 chr4 191154276 + 89011002 89011309 AluY 311 + 0 303 109081 126 6 0 44 6 8 125 chain 3624 chr4 191154276 + 89031928 89031972 MER58B 340 + 281 325 213288 44 chain 111735 chr4 191154276 + 89040495 89042035 THE1B-int 1605 + 0 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1 2 29 chain 3263 chr4 191154276 + 89121963 89122023 L1MCa 1829 + 1589 1648 219726 34 6 8 9 3 0 8 chain 3603 chr4 191154276 + 89122868 89122910 U6 107 + 14 56 213592 42 chain 26906 chr4 191154276 + 89141802 89142500 THE1C 375 + 0 375 96607 135 4 8 31 10 7 148 324 0 46 chain 22170 chr4 191154276 + 89143482 89143825 THE1B 368 + 0 368 119495 44 0 15 47 2 16 35 22 19 83 3 6 6 1 0 20 3 0 77 chain 45338 chr4 191154276 + 89143834 89144435 THE1C-int 1605 + 990 1592 62674 162 2 3 12 2 0 7 14 15 143 0 1 259 chain 26995 chr4 191154276 + 89144449 89144815 THE1C 375 + 2 375 96301 132 1 5 43 1 0 6 6 7 8 0 3 169 chain 6085 chr4 191154276 + 89147693 89147773 MIR 256 - 67 147 184538 80 chain 6279 chr4 191154276 + 89147889 89147968 U6 107 + 12 94 182947 31 0 3 48 chain 43110 chr4 191154276 + 89149792 89150379 LTR12 884 + 0 873 65277 24 1 0 157 0 91 68 3 4 17 40 0 17 2 0 82 0 1 127 0 236 49 chain 94201 chr4 191154276 + 89154824 89156129 L1MA2 4263 - 207 1512 38299 91 13 11 28 0 1 4 1 0 115 30 29 117 1 0 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129 3 0 3 2 0 61 0 1 69 chain 24996 chr4 191154276 + 91334839 91335129 AluYc 301 + 15 301 104814 99 4 0 187 chain 25837 chr4 191154276 + 91338015 91338365 L1PA8 5853 + 5511 5853 100716 50 2 1 20 1 0 28 2 0 69 1 0 9 1 0 51 3 2 19 1 0 93 chain 28564 chr4 191154276 + 91381195 91381496 AluYg6 310 + 0 301 90900 301 chain 29369 chr4 191154276 + 91382205 91382517 AluYa5 310 - 0 310 87208 217 2 0 93 chain 533809 chr4 191154276 + 91400543 91406674 L1PA4 6152 - 12 6152 3725 53 0 2 46 0 1 1687 0 8 317 0 1 343 1 0 2366 1 2 553 11 7 209 7 8 537 chain 293115 chr4 191154276 + 91410675 91414092 L1PA5 6144 - 2 3424 13816 130 24 23 899 0 1 431 0 1 165 0 1 13 1 3 194 0 2 1109 1 0 450 chain 135447 chr4 191154276 + 91414092 91415678 L1PA5 6144 + 1156 2742 26920 471 1 2 213 3 1 288 2 0 44 0 2 7 0 1 557 chain 31470 chr4 191154276 + 91424569 91424931 L1PA4 6152 - 0 367 81689 6 0 5 356 chain 52730 chr4 191154276 + 91447553 91448210 L1PA7 6471 - 2 687 57170 126 36 64 495 chain 30289 chr4 191154276 + 91448211 91448569 L1PA7 6471 + 5422 5783 83962 186 6 9 166 chain 8861 chr4 191154276 + 91492102 91492228 L1PA17 2846 + 2568 2692 166319 24 2 0 8 1 0 12 0 3 17 1 0 18 1 0 42 chain 29686 chr4 191154276 + 91495402 91495718 AluYb9 318 - 2 318 85880 316 chain 59958 chr4 191154276 + 91512526 91513350 L1PA8 5853 + 5034 5853 52844 147 5 6 376 1 0 45 2 0 70 22 21 41 2 1 19 3 2 91 chain 19340 chr4 191154276 + 91514501 91514776 MER51B 395 - 64 394 129110 74 18 17 73 0 56 110 chain 5113 chr4 191154276 + 91525789 91525850 LTR12D 1347 + 587 648 193945 61 chain 7273 chr4 191154276 + 91534722 91534807 Tigger1 2417 - 850 935 175638 85 chain 61300 chr4 191154276 + 91543428 91544130 L1PA5 6144 - 6 711 52208 141 0 1 180 8 10 373 chain 9620 chr4 191154276 + 91548866 91548977 AluY 311 + 17 128 162488 111 chain 39681 chr4 191154276 + 91572361 91572849 L1PA7 6471 + 5982 6470 69784 176 1 0 150 7 8 154 chain 24534 chr4 191154276 + 91586470 91586750 AluYf4 310 - 8 289 107351 94 3 4 183 chain 36368 chr4 191154276 + 91588502 91588935 L1PA7 6471 - 7 441 74404 140 0 1 293 chain 567265 chr4 191154276 + 91596877 91602908 L1HS 6032 - 0 6032 75 5959 0 1 72 chain 518898 chr4 191154276 + 91621140 91627212 L1PA5 6144 - 0 6090 5277 245 2 0 21 5 6 552 0 1 24 0 1 4 5 9 623 1 0 208 1 13 552 0 2 2673 2 3 129 0 2 5 8 6 641 14 13 357 chain 5787 chr4 191154276 + 91641693 91641760 LTR17 781 - 455 522 187305 67 chain 12573 chr4 191154276 + 91668810 91669186 L1PA3long 6157 - 5 381 40104 312 0 1 21 1 0 42 chain 149792 chr4 191154276 + 91669189 91670816 L1PA2 6032 - 3 1630 24649 1627 chain 21334 chr4 191154276 + 91670825 91671463 L1PA3long 6157 - 381 1019 40104 638 chain 6388 chr4 191154276 + 91674129 91674310 MER34B 572 - 10 227 182121 16 1 0 4 0 3 19 1 14 24 7 14 11 54 68 44 chain 22491 chr4 191154276 + 91710648 91711019 THE1B 368 + 0 368 118060 60 28 21 28 13 12 51 1 0 28 2 0 106 16 24 38 chain 24434 chr4 191154276 + 91711794 91712081 THE1C-int 1605 - 1303 1590 107894 287 chain 116062 chr4 191154276 + 91724365 91725768 L1PA7 6471 - 3 1403 32431 9 2 0 117 0 1 720 1 0 344 1 0 209 chain 31732 chr4 191154276 + 91733122 91733541 MLT2A1 477 - 62 477 81275 18 6 0 12 0 2 36 0 1 141 0 1 24 0 1 10 5 2 167 chain 26021 chr4 191154276 + 91734595 91734948 THE1A 353 + 0 353 99940 102 10 9 39 1 2 201 chain 23058 chr4 191154276 + 91756211 91756485 AluY 311 + 10 286 115362 14 0 1 107 0 1 153 chain 30056 chr4 191154276 + 91770227 91770658 THE1D-int 1627 + 15 536 84637 95 11 14 144 10 16 109 5 86 57 chain 26570 chr4 191154276 + 91784111 91784404 L1PA3long 6157 - 19 312 97762 293 chain 12801 chr4 191154276 + 91785444 91785804 MSTD 398 + 0 386 149045 44 5 7 76 128 154 29 33 31 45 chain 519057 chr4 191154276 + 91832654 91838813 L1PA4 6152 + 10 6141 5257 719 14 4 169 0 1 785 0 3 26 6 0 603 2 0 366 22 22 398 0 1 94 23 2 621 0 1 369 5 6 532 0 1 392 0 1 258 1 0 433 0 1 149 0 1 17 1 2 154 chain 63785 chr4 191154276 + 91929886 91930679 LTR17 781 - 0 781 51104 340 10 0 66 9 8 40 1 0 327 chain 93325 chr4 191154276 + 91943162 91944212 L1PA4 6152 - 9 1051 38559 251 1 0 101 7 0 690 chain 67215 chr4 191154276 + 91944212 91944958 L1PA4 6152 + 4394 5139 49379 606 1 0 139 chain 15889 chr4 191154276 + 91963233 91963610 THE1D 372 + 0 372 138686 15 0 2 15 1 0 24 84 76 41 25 27 25 20 25 32 5 0 90 chain 21700 chr4 191154276 + 91966949 91967302 LTR7 482 - 9 482 121387 40 13 14 113 0 4 7 11 42 30 1 12 61 0 50 41 13 36 23 chain 6702 chr4 191154276 + 91977433 91977562 MLT1A1 405 - 30 167 179673 27 12 7 7 0 4 29 14 23 40 chain 5867 chr4 191154276 + 91977817 91977932 L1M4c 1769 - 1515 1604 186511 51 6 0 4 20 0 34 chain 2939 chr4 191154276 + 91985557 91985798 MER68B 564 - 152 386 226350 18 190 183 33 chain 391432 chr4 191154276 + 92000015 92004700 L1PA6 6164 + 1431 6146 10412 20 0 3 291 1 5 302 13 17 144 1 3 105 4 5 78 7 9 90 0 1 4 1 0 55 1 0 4 0 1 527 0 1 93 0 1 275 0 10 89 1 0 375 5 1 703 1 0 219 0 5 1143 5 8 128 chain 59624 chr4 191154276 + 92020595 92021349 MER4E1 777 - 7 760 53039 49 1 3 179 8 1 72 3 4 124 3 6 315 chain 74884 chr4 191154276 + 92024673 92025681 MER11A 1151 + 0 1147 46070 72 0 99 59 0 4 58 10 6 28 0 2 115 0 1 94 0 1 143 5 8 116 0 27 23 22 27 37 0 1 226 chain 22616 chr4 191154276 + 92037010 92037295 L1PA5 6144 - 2 287 117506 147 14 14 124 chain 13447 chr4 191154276 + 92037295 92037447 L1PA5 6144 + 5705 5857 146535 152 chain 67919 chr4 191154276 + 92058163 92058897 L1PA2 6032 - 2 736 49274 734 chain 104052 chr4 191154276 + 92058897 92060016 L1PA2 6032 + 4178 5297 35721 1119 chain 8711 chr4 191154276 + 92062175 92062301 L1PA16 3655 - 115 236 167139 29 0 2 35 8 1 54 chain 513137 chr4 191154276 + 92069637 92075815 L1PA5 6144 - 0 6144 5870 537 0 3 306 11 15 1215 2 0 67 1 0 103 0 13 295 0 1 468 4 0 935 44 0 420 0 8 165 0 1 346 0 1 75 9 0 88 1 9 592 1 0 303 6 0 10 21 15 153 chain 502866 chr4 191154276 + 92081053 92087215 L1PA6 6164 - 2 6164 6677 151 0 1 30 4 5 644 34 28 1000 37 5 135 0 1 57 0 1 91 0 3 245 0 1 850 1 2 586 0 1 111 0 2 957 0 1 547 0 24 32 0 1 185 6 5 395 0 1 64 chain 105198 chr4 191154276 + 92089027 92090365 SVA_A 1864 + 465 1864 35450 32 3 0 41 0 76 119 3 0 26 0 2 79 2 0 47 1 0 26 2 0 188 30 63 81 2 0 56 39 0 270 0 2 291 chain 2678 chr4 191154276 + 92089765 92089804 SVA_A 1864 + 1117 1190 56150 10 12 46 17 chain 9887 chr4 191154276 + 92095609 92095741 L1PA8 5853 - 0 130 161145 93 1 0 16 1 0 21 chain 495737 chr4 191154276 + 92095975 92108437 L1PA5 6144 - 0 6144 7086 849 2 1 258 1 0 18 1 2 17 0 1 98 6 5 132 0 1 311 0 5 484 0 1 681 4 5 41 12 15 92 0 4 59 0 1 521 0 3 161 0 2 226 0 6 348 2 1 560 0 1 65 9 0 894 6360 10 130 1 15 55 1 2 63 chain 42291 chr4 191154276 + 92101853 92102345 MER9a1 513 - 20 513 66281 206 0 1 286 chain 368771 chr4 191154276 + 92102345 92106894 HERVK9-int 4720 - 0 4684 11127 97 7 11 174 0 96 693 0 1 171 0 1 143 22 24 195 0 2 56 0 4 26 1 0 517 0 1 84 1 0 101 7 10 13 1 30 542 9 7 86 0 1 218 1 0 4 0 1 156 0 1 4 2 6 18 0 1 894 3 0 16 1 0 100 1 2 4 1 0 47 1 0 30 2 1 7 1 0 66 1 0 4 8 5 13 chain 45394 chr4 191154276 + 92107664 92108177 MER9a1 513 - 0 513 62604 513 chain 15692 chr4 191154276 + 92117151 92117348 AluYk4 311 + 94 300 139297 37 0 1 141 0 8 19 chain 73504 chr4 191154276 + 92129740 92130898 L1PREC2 3366 - 502 1669 46782 9 3 0 5 1 0 16 0 8 17 11 10 47 2 0 12 5 6 21 1 0 20 0 6 220 0 1 118 18 18 60 1 22 10 26 5 92 18 19 283 18 43 11 26 1 87 chain 130967 chr4 191154276 + 92138092 92139685 LTR12C 1709 - 0 1709 27868 168 0 102 83 0 13 115 0 4 106 4 2 5 1 0 274 1 0 174 1 2 282 1 2 63 1 0 4 0 1 201 8 7 101 chain 33109 chr4 191154276 + 92150658 92151151 L1PA8 5853 + 5366 5853 79039 242 2 0 67 5 4 15 11 10 34 36 34 81 chain 66461 chr4 191154276 + 92176739 92177822 MER11B 1079 + 0 1079 49888 204 0 1 202 1 0 4 0 1 18 7 10 17 18 17 22 35 23 4 0 1 14 15 8 48 0 1 109 0 7 7 1 0 16 68 62 24 5 6 53 0 1 76 3 11 66 0 1 13 4 3 29 chain 36819 chr4 191154276 + 92180618 92181062 L1PA7 6471 - 25 471 73780 314 0 1 47 7 8 76 chain 164550 chr4 191154276 + 92192441 92195053 L1PB1 5432 - 12 2256 22739 16 1 0 10 1 0 24 1 0 24 2 0 14 1 0 5 2 0 30 24 11 6 1 0 44 1 0 16 10 1 52 2 0 9 24 18 26 1 0 8 341 3 84 7 9 45 10 18 171 0 1 54 0 3 88 1 0 202 0 1 29 5 7 399 1 0 27 4 3 229 6 0 149 0 1 4 1 0 177 0 2 99 1 2 123 chain 17499 chr4 191154276 + 92226837 92227203 THE1B 368 - 3 368 134272 28 32 31 64 1 0 25 0 7 6 66 63 25 6 7 79 4 0 30 chain 11939 chr4 191154276 + 92231457 92231616 MER30 238 - 18 189 152447 86 7 19 66 chain 12745 chr4 191154276 + 92237031 92237327 THE1B 368 + 0 299 149275 58 24 24 21 12 11 55 29 31 14 33 35 50 chain 7539 chr4 191154276 + 92246042 92246139 MSTA 426 + 0 96 173932 55 1 0 41 chain 35159 chr4 191154276 + 92274268 92274741 LTR2B 499 - 0 490 75974 182 1 0 10 0 1 12 0 2 163 9 28 27 3 0 60 1 0 5 chain 58511 chr4 191154276 + 92278289 92279052 Harlequin-int 5206 - 4319 5081 53693 220 0 2 180 3 0 115 10 14 45 3 6 16 0 1 65 4 1 74 8 0 13 0 3 7 chain 36450 chr4 191154276 + 92280106 92280581 LTR2B 499 - 0 490 74293 182 1 0 8 0 1 175 3 22 46 3 0 51 1 0 5 chain 522942 chr4 191154276 + 92297912 92303998 L1PA5 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191154276 + 92383530 92389664 L1PA5 6144 + 0 6143 3843 534 0 1 167 1 0 193 0 1 258 0 3 674 0 1 481 1 0 729 0 3 1577 1 0 223 0 5 1041 1 0 241 2 1 10 chain 67923 chr4 191154276 + 92400898 92401642 L1PA2 6032 - 6 750 49272 744 chain 30375 chr4 191154276 + 92402925 92403270 L1PA5 6144 + 5133 5482 83727 164 0 4 181 chain 59568 chr4 191154276 + 92403583 92404255 L1PA5 6144 + 5472 6144 53071 672 chain 3020 chr4 191154276 + 92421937 92422000 L1PB1 5432 - 10 70 224606 18 1 0 13 8 7 14 1 0 8 chain 258225 chr4 191154276 + 92442043 92445082 L1PA6 6164 - 3 3059 15799 117 1 0 10 0 2 22 1 2 221 0 5 865 0 2 191 0 1 63 3 8 1351 0 1 108 4 5 82 chain 348810 chr4 191154276 + 92462393 92466606 L1PA5 6144 - 13 6144 11643 5 1 0 194 0 1 1040 0 1929 379 0 1 724 0 1 423 2 1 207 0 1 6 1 0 50 9 0 136 21 20 232 0 1 101 0 3 234 25 5 288 0 14 135 chain 39406 chr4 191154276 + 92544790 92545232 LTR7 482 + 0 474 70156 156 0 1 89 0 31 197 chain 287959 chr4 191154276 + 92545242 92549266 HERVH-int 3825 + 0 3825 14161 212 0 11 105 0 2 202 300 0 12 125 0 26 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 39 0 49 0 1 9 8 28 11 2 1 49 1 0 96 0 5 349 16 1 455 4 31 110 0 1 185 1 11 132 0 1 911 0 1 52 37 247 225 3 8 11 0 1 213 chain 24196 chr4 191154276 + 92545769 92546053 HERVH-int 3825 + 245 529 109240 284 chain 4298 chr4 191154276 + 92546149 92546196 HERVH-int 3825 + 439 486 203255 47 chain 39812 chr4 191154276 + 92550398 92550850 LTR7 482 + 0 482 69609 230 0 31 24 1 0 197 chain 3135 chr4 191154276 + 92557721 92557790 MIR 256 - 119 185 222250 33 19 16 17 chain 4001 chr4 191154276 + 92565028 92565078 MADE1 96 + 45 95 207372 50 chain 40375 chr4 191154276 + 92575752 92576204 LTR7 482 - 0 482 68770 190 0 31 12 1 0 249 chain 292727 chr4 191154276 + 92577463 92581266 HERVH-int 3825 - 0 3825 13841 490 5 215 52 0 1 435 0 1 183 1 0 527 0 2 2 2 0 196 9 36 451 15 0 455 1 0 49 2 1 18 65 2 10 2 1 42 29 25 12 1 0 15 70 0 24 18 16 29 69 0 312 0 11 212 chain 2539 chr4 191154276 + 92580532 92580601 HERVH-int 3825 - 3142 3207 191291 27 12 11 14 3 0 13 chain 3725 chr4 191154276 + 92580675 92580716 HERVH-int 3825 - 3348 3389 211561 41 chain 40592 chr4 191154276 + 92581268 92581719 LTR7 482 - 0 482 68453 185 0 31 266 chain 4140 chr4 191154276 + 92582887 92582938 L1PB4 2604 + 1294 1345 205357 51 chain 6637 chr4 191154276 + 92613677 92613760 L1PA16 3655 + 3073 3156 180191 83 chain 22613 chr4 191154276 + 92615613 92615936 THE1C-int 1605 + 37 419 117518 4 1 0 7 0 1 21 0 1 25 0 57 17 3 0 40 0 3 126 11 12 68 chain 33509 chr4 191154276 + 92617304 92617808 MER9a3 513 - 0 513 78396 57 6 0 22 2 3 155 5 23 53 0 1 140 30 0 10 1 24 5 0 2 18 chain 288597 chr4 191154276 + 92617808 92621302 HERVK9-int 4720 - 0 4666 14114 264 0 1 395 0 2 355 0 1 67 1 0 119 2 1159 12 0 2 39 0 2 487 3 2 388 0 1 244 1 5 572 0 1 27 0 4 410 1 0 29 11 9 9 0 2 18 0 1 33 1 0 6 chain 38933 chr4 191154276 + 92622669 92623154 MER9a3 513 - 21 513 70824 59 0 1 121 0 4 292 0 2 13 chain 44309 chr4 191154276 + 92627134 92627665 L1P1 4361 - 20 548 63814 12 2 1 22 2 1 154 1 0 338 chain 77423 chr4 191154276 + 92627666 92628533 L1PA4 6152 + 5276 6143 44765 867 chain 24796 chr4 191154276 + 92643809 92644117 AluY 311 + 19 311 105906 107 16 0 185 chain 26440 chr4 191154276 + 92663648 92664161 L1PB1 5432 - 28 511 98268 13 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 3 0 10 0 1 4 1 0 44 1 0 16 2 1 53 50 42 11 5 0 7 1 4 106 2 3 73 chain 298510 chr4 191154276 + 92664188 92668902 L1PBa1 4058 - 18 4048 13505 42 1 0 16 1 0 10 1 0 5 1 0 6 11 8 12 1 0 22 7 5 19 7 5 12 317 1 11 1 0 15 3 1 104 2 0 45 1 0 28 10 8 116 12 1 113 1 0 121 0 7 104 1 0 298 0 4 136 304 0 287 0 1 52 5 6 477 7 8 5 1 0 266 0 2 204 0 1 345 10 6 56 4 0 89 0 1 70 9 12 38 5 2 17 1 2 138 36 0 49 17 16 84 10 9 90 2 1 13 4 0 7 1 5 150 1 3 198 11 8 11 1 0 26 chain 15422 chr4 191154276 + 92685652 92685848 THE1B-int 1605 + 2 202 140125 111 0 3 21 0 1 64 chain 4113 chr4 191154276 + 92686814 92686863 THE1B 368 + 240 289 205738 49 chain 41132 chr4 191154276 + 92694038 92694568 THE1A-int 1579 - 1026 1561 67742 177 0 1 67 1 2 62 0 3 223 chain 554810 chr4 191154276 + 92707177 92713200 L1PA2 6032 - 2 6020 848 5663 5 0 355 chain 75841 chr4 191154276 + 92715838 92716742 L1PA7 6471 - 2 1582 45578 10 2 0 303 0 676 161 0 1 24 0 1 404 chain 38680 chr4 191154276 + 92719656 92720267 LTR12_ 688 + 0 688 71174 25 9 8 61 0 2 19 0 49 83 12 27 145 33 43 22 50 52 152 chain 3062 chr4 191154276 + 92727241 92727275 THE1A 353 + 317 351 223782 34 chain 48192 chr4 191154276 + 92743638 92744210 LTR22 571 + 0 571 60327 254 1 0 317 chain 4208 chr4 191154276 + 92756378 92756424 L1PA16 3655 + 3530 3576 204449 46 chain 29774 chr4 191154276 + 92762245 92762700 L1PA13 3608 + 3048 3488 85570 81 6 4 26 1 0 114 2 0 59 8 7 19 1 0 28 1 0 10 2 0 48 8 4 20 1 0 20 chain 16761 chr4 191154276 + 92778551 92778844 AluY 311 + 0 294 136222 47 28 36 76 11 12 35 8 9 72 9 0 7 chain 504124 chr4 191154276 + 92779861 92785610 L1PA4 6152 - 371 6152 6590 479 0 4 178 0 1 415 0 1 43 0 8 1182 0 1 258 0 1 44 0 1 1708 0 4 32 1 6 375 1 0 774 0 6 105 0 1 154 chain 262386 chr4 191154276 + 92810410 92815692 HERVL-int 5654 + 0 5646 15564 411 1009 2150 581 3 4 403 0 1 4 1 11 18 0 1 53 413 0 730 5 9 75 23 24 25 1 2 290 0 1 109 0 1 80 429 72 169 37 7 52 0 1 36 0 1 325 chain 52668 chr4 191154276 + 92810839 92811411 L1PA3long 6157 - 0 572 57205 572 chain 7160 chr4 191154276 + 92811483 92811568 L1P1 4361 + 4244 4328 176333 61 1 0 23 chain 28755 chr4 191154276 + 92812897 92813247 HERVL-int 5654 - 2743 3093 90093 350 chain 10886 chr4 191154276 + 92826662 92826795 L1PA7 6471 - 1 139 156636 12 0 5 121 chain 13607 chr4 191154276 + 92886996 92887181 L1PA8 5853 - 6 202 145949 86 2 1 19 2 1 50 0 13 26 chain 565758 chr4 191154276 + 92899362 92905394 L1HS 6032 + 0 6032 172 6032 chain 32526 chr4 191154276 + 92930041 92930814 MLT2A1 477 + 0 477 79986 140 0 1 20 9 13 209 2 0 14 330 31 49 chain 4779 chr4 191154276 + 92930667 92930722 MLT2A1 477 - 149 204 197589 55 chain 23535 chr4 191154276 + 92946530 92946922 MER4A1 472 - 19 449 112933 49 7 27 8 3 0 94 28 49 157 23 23 23 chain 37525 chr4 191154276 + 92946922 92947378 LTR7Y 441 + 0 426 72782 169 31 0 154 0 1 102 chain 102305 chr4 191154276 + 92947393 92948882 HERVH-int 3825 + 0 1431 36192 532 191 0 38 11 159 50 2 1 290 13 14 145 16 1 201 chain 5405 chr4 191154276 + 92947925 92947986 HERVH-int 3825 + 471 532 182878 61 chain 4266 chr4 191154276 + 92947998 92948046 HERVH-int 3825 + 483 531 203682 48 chain 38452 chr4 191154276 + 92951843 92952302 LTR7Y 441 + 0 430 71514 37 0 2 130 31 0 261 chain 185514 chr4 191154276 + 92952350 92955028 MER4-int 2692 - 6 2691 20462 175 0 3 6 3 0 4 1 0 218 3 0 16 0 5 6 0 1 4 30 2 114 0 2 103 0 1 28 1 0 102 6 5 83 26 30 20 4 6 31 0 1 155 4 3 66 1 0 27 7 8 61 1 17 50 1 2 143 14 32 17 2 1 10 7 6 14 1 0 203 2 1 218 0 1 126 3 0 11 0 1 414 6 5 11 3 0 18 1 0 13 1 5 23 1 2 20 2 0 26 2 0 9 chain 36120 chr4 191154276 + 92959580 92960047 LTR2 463 - 0 463 74740 94 0 1 136 28 23 209 chain 427323 chr4 191154276 + 92960047 92965093 Harlequin-int 5206 - 0 5074 9362 205 12 0 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148 9 15 84 5 6 245 0 1 850 0 1 262 2 1 587 0 1 250 2 0 8 chain 42298 chr4 191154276 + 93012346 93012898 MER41A 554 - 0 554 66271 73 7 12 161 4 1 307 chain 9936 chr4 191154276 + 93019508 93019632 L1PA4 6152 - 775 902 160894 71 0 2 11 0 1 42 chain 62443 chr4 191154276 + 93019632 93020330 L1PA4 6152 + 5447 6152 51699 283 0 1 307 0 1 102 0 5 6 chain 29117 chr4 191154276 + 93028885 93029189 AluYa5 310 - 6 310 88471 304 chain 41744 chr4 191154276 + 93036537 93037097 THE1D-int 1627 + 0 543 66972 435 17 1 58 3 2 47 chain 115695 chr4 191154276 + 93038564 93040078 L1PA10 4194 - 45 1569 32560 33 3 0 62 0 1 18 0 1 132 0 3 452 1 3 373 16 11 104 1 0 146 0 1 75 7 9 19 0 9 72 chain 66164 chr4 191154276 + 93053816 93054550 L1PA3long 6157 + 5421 6157 50020 406 0 3 310 1 0 17 chain 21898 chr4 191154276 + 93073497 93073801 L1PB2 3958 - 123 422 120630 60 1 0 21 3 1 12 0 2 22 1 0 36 1 0 64 1 0 77 1 0 4 chain 41584 chr4 191154276 + 93094010 93094575 LTR19B 566 - 0 566 67180 30 25 22 16 7 12 191 1 0 295 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93326981 93327408 MLT2A1 477 - 10 477 94684 9 1 0 24 4 0 8 3 41 202 17 21 21 1 2 87 12 14 38 chain 9659 chr4 191154276 + 93327914 93328034 L1PA16 3655 - 114 234 162305 120 chain 18416 chr4 191154276 + 93338869 93339167 THE1B 368 + 0 306 131727 15 2 0 32 0 6 116 24 27 4 1 0 9 3 7 16 1 0 8 1 0 66 chain 22109 chr4 191154276 + 93350019 93350304 L1PA7 6471 - 4 291 119742 8 2 0 134 6 8 51 0 2 84 chain 40051 chr4 191154276 + 93360104 93360555 LTR7 482 - 0 482 69246 187 0 31 264 chain 292685 chr4 191154276 + 93361812 93365352 HERVH-int 3825 - 0 3825 13846 185 0 5 297 8 218 269 0 1 694 0 1 151 0 4 284 4 31 174 0 2 286 15 0 444 1 0 49 2 1 7 0 20 45 1 38 15 25 15 9 1 0 10 1 0 24 5 7 6 5 0 142 1 0 168 0 11 212 chain 38892 chr4 191154276 + 93365354 93365805 LTR7 482 - 0 482 70878 187 0 31 264 chain 23895 chr4 191154276 + 93375715 93376004 AluY 311 + 10 300 110925 120 1 2 168 chain 29297 chr4 191154276 + 93393073 93393383 AluYa5 310 - 0 310 87586 310 chain 3620 chr4 191154276 + 93457001 93457520 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L1PA5 6144 - 2 204 138201 150 6 4 48 chain 3534 chr4 191154276 + 94317496 94317535 MER44B 551 - 21 60 214819 39 chain 65910 chr4 191154276 + 94333745 94334595 L1PA8 5853 - 0 844 50133 93 1 0 17 1 0 45 2 0 6 2 5 8 2 1 70 2 0 44 1 0 462 1 0 93 chain 11107 chr4 191154276 + 94355481 94355616 L1PA5 6144 + 6014 6144 155778 124 5 0 6 chain 46700 chr4 191154276 + 94359896 94360421 L1PA4 6152 - 62 587 61456 525 chain 22717 chr4 191154276 + 94374050 94374308 L1PA4 6152 - 9 268 117001 139 0 1 119 chain 37493 chr4 191154276 + 94403330 94403851 L1PA8 5853 + 5335 5853 72817 58 0 2 169 2 1 45 2 0 47 2 0 5 0 4 16 16 14 44 2 1 19 1 0 93 chain 29601 chr4 191154276 + 94424475 94424808 L1PA4 6152 - 0 331 86208 6 2 0 325 chain 18211 chr4 191154276 + 94429101 94429317 L1PA4 6152 + 5933 6151 132310 68 4 5 136 0 1 8 chain 23807 chr4 191154276 + 94465655 94465958 AluSp 311 + 9 311 111434 268 6 5 29 chain 66660 chr4 191154276 + 94473049 94473793 L1PA4 6152 - 17 762 49805 138 0 1 606 chain 59250 chr4 191154276 + 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14891 47 280 40 28 23 7 65 36 34 50 18 17 7 1 0 6 1 2 285 0 1 5 1 0 46 1 0 20 0 1 689 0 3 89 2 3 31 22 19 160 14 19 139 0 1 98 6 7 10 7 8 184 0 1 52 5 6 307 0 1 100 15 14 51 5 0 88 8 7 25 23 23 117 2 0 82 22 24 78 6 7 121 10 11 154 4 7 17 5 4 105 3 0 17 9 4 208 21 18 115 16 1 26 11 9 93 7 0 17 1 0 39 chain 51723 chr4 191154276 + 94878819 94879430 L1PA7 6471 + 5850 6461 57804 611 chain 122675 chr4 191154276 + 94898178 94899751 THE1B-int 1605 + 0 1600 30173 80 1 0 239 0 1 110 0 25 187 0 1 105 0 9 7 18 9 49 0 1 290 7 6 365 4 5 111 chain 149869 chr4 191154276 + 94924319 94925981 L1PA4 6152 + 4489 6152 24631 1101 0 1 561 chain 24555 chr4 191154276 + 94936416 94936711 AluSg7 307 - 3 299 107226 177 0 1 118 chain 125993 chr4 191154276 + 94946544 94947939 L1PA3long 6157 + 4750 6149 29104 554 0 4 841 chain 131590 chr4 191154276 + 94949312 94950768 L1PA3long 6157 - 0 1455 27720 366 1 0 1089 chain 67467 chr4 191154276 + 94950770 94951550 L1PA3long 6157 + 3924 4708 49464 343 0 3 78 6 10 117 4 0 164 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52 103 7 5 265 chain 8288 chr4 191154276 + 95010943 95011042 LTR7 482 - 6 105 169465 99 chain 6455 chr4 191154276 + 95011042 95011433 THE1B-int 1605 - 1213 1605 33229 57 0 1 334 chain 44300 chr4 191154276 + 95016583 95017250 L1PA13 3608 - 123 776 63823 18 0 1 13 13 9 48 22 15 5 0 1 13 2 0 28 1 0 61 2 0 113 1 0 32 2 1 47 0 3 6 3 0 27 0 1 21 7 8 182 chain 554427 chr4 191154276 + 95020058 95026198 L1PA3long 6157 + 1 6157 893 1045 1 0 229 1 0 440 0 1 536 0 2 1044 1 0 198 0 5 445 0 1 410 0 4 171 0 1 777 0 4 182 0 1 660 chain 5486 chr4 191154276 + 95051632 95051699 MER39 703 + 300 367 190159 67 chain 10428 chr4 191154276 + 95053920 95054064 MSTA 426 + 246 389 158564 45 1 0 4 0 1 16 6 5 72 chain 360040 chr4 191154276 + 95065469 95069810 L1P2 5180 - 876 5178 11362 616 1 0 101 9 8 1097 0 1 102 0 1 4 3 1 54 15 0 271 0 1 379 5 0 203 23 10 369 1 4 289 1 0 6 1 0 224 1 0 48 1 0 268 2 0 53 1 0 44 1 0 148 chain 127622 chr4 191154276 + 95070687 95072384 L1PA8 5853 - 0 1633 28664 93 1 0 19 2 1 52 1 0 9 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95422712 MER5C 305 + 0 154 179363 16 30 54 54 0 2 28 chain 33864 chr4 191154276 + 95430709 95431146 MLT2A1 477 - 0 477 77835 6 0 4 27 19 57 179 0 1 33 4 1 169 chain 143440 chr4 191154276 + 95432923 95435279 L1MA2 4263 - 150 2239 25570 7 1 0 50 7 0 90 1 0 11 1 0 74 305 2 15 3 5 31 0 1 21 3 0 101 0 3 30 1 4 6 1 0 33 0 3 42 4 0 17 14 45 53 0 5 46 0 1 18 2 0 321 0 1 24 0 2 141 2 3 194 0 6 6 5 0 56 2 12 91 23 16 76 22 19 175 0 1 43 0 1 187 chain 35535 chr4 191154276 + 95453364 95453858 LTR3B_ 500 - 17 500 75497 13 11 12 52 2 0 74 13 0 253 0 3 76 chain 12203 chr4 191154276 + 95464506 95464928 L1MA8 2339 - 17 404 151410 21 154 128 13 6 3 38 17 7 16 5 3 32 1 5 21 5 9 17 1 0 49 3 2 23 chain 11783 chr4 191154276 + 95476031 95476208 MER47A 366 + 105 291 153121 114 14 28 12 5 0 32 chain 207378 chr4 191154276 + 95477064 95479394 L1PA5 6144 - 6 2337 18691 740 0 1 1590 chain 29612 chr4 191154276 + 95498972 95499280 AluYa5 310 - 2 310 86169 308 chain 19392 chr4 191154276 + 95560956 95561193 AluSp 311 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8 94 0 1 415 0 15 220 0 1 317 1 0 109 1 0 523 0 1 808 0 5 378 7 0 30 0 1 29 0 1 136 chain 29202 chr4 191154276 + 95870456 95870766 AluYb8 318 - 8 318 88039 310 chain 9097 chr4 191154276 + 95922250 95922361 L1PA6 6164 - 4 115 165082 111 chain 120651 chr4 191154276 + 95950247 95951615 L1PA3long 6157 - 0 1347 30815 12 3 0 422 17 0 313 1 0 600 chain 65042 chr4 191154276 + 95951615 95952326 L1PA3long 6157 + 4089 4800 50512 711 chain 105393 chr4 191154276 + 95955823 95957284 L1PB2 3958 - 140 1577 35398 43 1 0 26 9 7 24 2 0 39 1 0 62 1 0 20 8 7 45 1 0 94 5 0 13 2 0 64 5 0 10 12 15 41 2 0 340 1 0 45 1 0 363 0 1 78 1 0 4 12 10 86 chain 5878 chr4 191154276 + 95963374 95963534 Tigger4 2445 + 2196 2353 186403 19 2 0 55 28 26 14 27 28 15 chain 30558 chr4 191154276 + 95964044 95964362 AluYb8 318 + 0 318 83293 318 chain 18611 chr4 191154276 + 96003137 96003338 L1PA3long 6157 - 0 202 131189 26 0 1 175 chain 26600 chr4 191154276 + 96003917 96004214 AluY 311 + 10 308 97657 122 0 1 175 chain 20265 chr4 191154276 + 96030875 96031105 L1PA4 6152 - 16 243 126329 56 3 0 171 chain 16589 chr4 191154276 + 96042260 96042472 L1P4 1494 + 468 684 136696 166 0 5 7 1 0 38 chain 523227 chr4 191154276 + 96055029 96061215 L1PA5 6144 - 0 6144 4846 18 1 0 133 0 4 15 1 2 275 9 13 78 0 1 304 0 4 47 0 2 81 0 1 1299 73 27 146 1 0 316 0 2 97 1 0 55 1 0 278 1 0 86 0 3 437 0 3 1247 9 0 105 0 1 611 0 1 112 21 0 159 8 6 26 0 14 135 chain 4348 chr4 191154276 + 96057292 96057338 L1PA5 6144 + 3476 3522 202612 46 chain 540441 chr4 191154276 + 96092387 96098402 L1PA3long 6157 - 1 6141 2748 154 7 0 69 3 5 990 8 9 5 1 0 1904 2 1 1591 0 1 521 1 129 68 0 1 555 0 1 136 chain 91215 chr4 191154276 + 96110607 96111647 L1PA5 6144 + 5098 6140 39231 30 0 1 655 4 5 351 chain 105384 chr4 191154276 + 96150283 96151853 L1PA7 6471 - 3 1263 35403 119 0 1 38 0 2 154 4 3 20 1 0 328 320 0 103 0 2 81 0 3 363 0 4 39 chain 40082 chr4 191154276 + 96156472 96156915 L1PA5 6144 - 837 1280 69207 443 chain 72654 chr4 191154276 + 96156916 96157744 L1PA5 6144 + 5312 6144 47191 73 0 3 422 0 1 333 chain 2947 chr4 191154276 + 96171894 96171925 U2 167 - 136 167 226132 31 chain 28543 chr4 191154276 + 96177872 96178286 MLT2A1 477 - 94 477 90991 139 27 1 66 7 6 18 4 0 153 chain 30214 chr4 191154276 + 96179894 96180211 AluYb8 318 - 1 318 84148 317 chain 28201 chr4 191154276 + 96245260 96245719 MER1A 529 + 0 524 92306 35 44 100 169 1 6 147 36 40 27 chain 67693 chr4 191154276 + 96249215 96249948 L1HS 6032 - 0 733 49367 733 chain 168450 chr4 191154276 + 96253017 96254882 L1PA3long 6157 + 4291 6157 22227 983 0 1 882 chain 4506 chr4 191154276 + 96272135 96272192 MLT2C1 407 - 323 380 200719 57 chain 5225 chr4 191154276 + 96316957 96317056 MER45A 178 - 68 175 192781 59 18 27 15 1 0 6 chain 11998 chr4 191154276 + 96350984 96351303 L1MC1 2226 + 1894 2181 152205 20 1 0 66 3 0 11 3 1 55 47 35 10 14 12 17 1 0 7 41 30 23 chain 4361 chr4 191154276 + 96375095 96375146 L1MB5 1630 + 1414 1465 202427 51 chain 217809 chr4 191154276 + 96401777 96404155 L1PA3long 6157 + 3762 6142 18014 984 0 1 435 0 1 959 chain 18653 chr4 191154276 + 96418208 96418456 L1PB2 3958 - 123 371 131078 60 1 0 22 2 0 13 0 5 53 2 1 64 1 0 30 chain 319167 chr4 191154276 + 96496007 96500000 L1PA6 6164 - 4 4067 12630 71 1 0 9 26 0 60 8 0 4 0 1 6 0 1 175 0 1 515 0 2 115 17 9 23 0 5 63 0 1 204 6 89 758 6 5 352 3 0 46 5 4 266 0 12 13 1 0 82 5 9 69 5 6 13 0 1 655 0 1 44 0 1 88 0 1 46 0 1 40 0 1 94 0 2 99 chain 162434 chr4 191154276 + 96500004 96502074 L1P2 5180 - 3093 5170 23009 338 0 1 32 1 0 327 0 1 487 5 9 94 0 15 218 1 0 50 1 0 69 8 0 195 8 7 50 2 1 43 6 5 135 chain 151622 chr4 191154276 + 96513136 96514804 L1PA2 6032 - 10 1675 24383 5 3 0 5 1 0 411 0 1 1243 chain 548604 chr4 191154276 + 96584859 96591013 L1PA3long 6157 + 6 6155 1625 672 5 0 36 11 4 133 0 1 951 0 2 339 2 0 705 1 2 1045 0 2 48 0 1 1793 0 1 162 0 1 251 chain 24844 chr4 191154276 + 96606465 96606769 AluY 311 + 1 298 105652 132 13 6 159 chain 22403 chr4 191154276 + 96630250 96630502 L1PA3long 6157 + 5902 6155 118470 112 0 1 140 chain 286650 chr4 191154276 + 96632175 96635616 L1PA7 6471 - 1 3466 14247 162 1 0 608 0 2 74 0 3 322 0 1 131 0 1 424 0 1 63 0 4 86 7 11 5 1 0 251 0 3 744 0 4 73 1 0 10 0 1 265 0 4 33 1 0 179 chain 88079 chr4 191154276 + 96655157 96656173 L1PA7 6471 - 2 1025 40345 336 0 2 290 0 3 127 0 3 85 1 0 177 chain 21670 chr4 191154276 + 96664328 96664715 THE1B 368 + 0 356 121497 40 72 44 88 11 10 18 5 3 153 chain 113850 chr4 191154276 + 96664727 96666282 THE1B-int 1605 + 0 1588 33134 67 10 6 149 4 5 113 6 3 48 2 0 37 3 28 225 8 9 68 37 38 110 0 3 384 1 7 143 0 5 140 chain 121020 chr4 191154276 + 96672685 96674071 L1PA5 6144 - 3 1402 30688 492 1 16 154 0 1 176 5 1 6 0 1 284 1 0 128 0 1 139 chain 103951 chr4 191154276 + 96674079 96675233 L1P1 4361 + 2698 3852 35743 1154 chain 4564 chr4 191154276 + 96693269 96693349 L1MA3 4352 + 4192 4265 200059 42 5 1 25 3 0 5 chain 63580 chr4 191154276 + 96693851 96694654 L1PA8A 6298 - 6 824 51198 621 0 5 96 14 16 54 0 8 18 chain 52755 chr4 191154276 + 96711088 96711852 MER4E1 777 - 11 760 57158 86 3 8 126 25 10 33 14 5 75 5 6 48 1 3 117 1 0 5 1 2 77 1 2 146 chain 520445 chr4 191154276 + 96712555 96718641 L1PA5 6144 + 3 6126 5108 132 2 16 280 1 0 4 10 11 198 4 6 123 0 1 261 1 3 185 0 1 216 0 3 266 1 0 1277 0 1 252 8 4 877 1 2 127 0 1 1046 1 5 74 4 15 420 1 2 314 chain 20527 chr4 191154276 + 96732692 96732956 MER4E1 777 + 487 751 125554 50 2 0 106 0 1 6 0 1 100 chain 152701 chr4 191154276 + 96748729 96750531 L1PA6 6164 + 4342 6162 24266 263 2 0 23 0 4 26 0 1 631 0 5 19 1 5 51 0 3 215 0 2 311 0 1 260 chain 3317 chr4 191154276 + 96765954 96765991 MER77 626 + 503 540 218636 37 chain 25800 chr4 191154276 + 96766111 96766482 THE1C 375 - 2 375 100867 63 0 3 48 1 0 42 33 31 5 0 2 179 chain 8552 chr4 191154276 + 96790767 96790869 L1PA6 6164 + 6051 6154 168005 74 0 1 28 chain 12757 chr4 191154276 + 96797537 96797682 L1PA5 6144 + 5995 6140 149224 145 chain 30296 chr4 191154276 + 96835238 96835556 AluYb8 318 - 0 318 83930 318 chain 552954 chr4 191154276 + 96835910 96841939 L1PA2 6032 + 0 6032 1071 3143 0 2 1855 0 1 1031 chain 34056 chr4 191154276 + 96846087 96846531 MER4A1 472 + 4 472 77535 10 0 2 8 0 1 7 1 0 198 1 22 144 1 0 4 3 5 67 chain 72651 chr4 191154276 + 96847081 96848102 MER11A 1151 + 0 1151 47193 55 0 99 76 0 4 60 4 0 32 0 2 115 0 1 84 6 0 9 0 7 140 5 6 53 0 4 74 9 42 21 18 0 36 0 1 60 6 7 93 0 1 4 5 14 34 5 0 17 chain 12378 chr4 191154276 + 96848102 96848309 L1PA8 5853 - 10 216 150717 27 1 4 52 1 0 17 1 0 51 5 4 9 18 17 25 chain 26947 chr4 191154276 + 96851872 96852158 AluYd8 298 + 0 286 96464 286 chain 142102 chr4 191154276 + 96852167 96854131 MER4-int 2692 + 682 2680 25802 43 1 0 6 0 3 28 0 2 23 0 1 4 30 22 78 3 0 26 0 1 62 1 0 174 0 6 157 16 17 75 0 1 4 1 0 58 1 0 4 4 6 97 0 8 192 1 0 167 1 3 217 0 1 63 4 5 32 0 8 6 0 3 77 0 6 5 0 1 107 3 6 193 chain 27231 chr4 191154276 + 96872610 96872973 THE1C 375 - 0 375 95493 25 1 0 119 2 5 7 3 0 18 0 12 11 0 1 13 1 0 106 0 1 57 chain 113089 chr4 191154276 + 96872973 96874608 THE1C-int 1605 - 0 1605 33352 73 0 1 119 9 23 7 13 0 76 1 2 367 8 9 58 0 5 102 17 11 77 1 0 77 1 0 96 8 16 34 0 7 110 0 6 96 4 0 23 54 0 182 0 4 9 1 3 12 chain 7714 chr4 191154276 + 96887364 96887459 MER21B 843 - 120 215 172839 95 chain 41307 chr4 191154276 + 96899323 96899835 MER9a2 513 + 0 513 67525 96 14 15 402 chain 14461 chr4 191154276 + 96921725 96921972 THE1D-int 1627 - 1422 1615 143014 43 63 9 141 chain 42410 chr4 191154276 + 96922225 96922917 L1PB1 5432 + 4756 5419 66137 46 4 5 8 1 0 288 8 7 4 1 0 24 1 0 16 19 13 53 2 1 16 1 0 43 1 0 10 20 7 30 12 9 10 2 0 24 1 0 22 0 3 9 1 0 15 chain 50848 chr4 191154276 + 96942542 96943314 HSMAR1 1287 + 506 1287 58398 54 3 0 87 0 1 4 0 1 8 7 0 6 1 11 16 25 25 190 40 44 158 20 21 24 0 2 129 chain 4640 chr4 191154276 + 96951483 96951536 MLT2A2 560 + 507 560 199196 53 chain 24823 chr4 191154276 + 96953930 96954285 L1PA8 5853 - 0 348 105753 80 14 13 19 2 1 47 1 0 14 2 1 69 2 0 46 1 0 58 chain 143487 chr4 191154276 + 96954498 96956093 L1PA4 6152 + 4556 6151 25563 1595 chain 97451 chr4 191154276 + 97004527 97005696 L1PA7 6471 + 5294 6468 37443 63 0 3 132 0 2 127 1 0 115 0 1 731 chain 6442 chr4 191154276 + 97006327 97006404 LTR12F 595 + 402 479 181695 77 chain 9324 chr4 191154276 + 97023259 97023416 THE1D 372 + 0 140 163930 24 0 1 50 14 0 9 11 7 49 chain 24105 chr4 191154276 + 97040827 97041110 AluSp 311 + 13 296 109719 283 chain 29739 chr4 191154276 + 97050395 97050704 AluYb8 318 - 9 318 85696 309 chain 9407 chr4 191154276 + 97073449 97073554 U6 107 - 2 107 163519 105 chain 25632 chr4 191154276 + 97082604 97082891 AluYf4 310 + 22 307 101573 107 2 0 178 chain 3472 chr4 191154276 + 97155488 97155910 L1MC3 1789 + 482 928 215783 25 1 2 11 177 206 16 1 0 8 157 152 26 chain 7915 chr4 191154276 + 97169896 97170166 L1MA6 2487 + 2179 2392 171553 41 0 2 5 21 5 31 8 0 7 102 70 39 3 0 13 chain 19510 chr4 191154276 + 97230404 97230760 THE1B 368 + 0 368 128627 44 54 70 55 1 0 18 9 5 93 11 12 71 chain 15512 chr4 191154276 + 97245008 97245223 THE1A 353 - 121 328 139848 89 8 1 32 2 1 84 chain 261660 chr4 191154276 + 97256843 97259759 L1PA3long 6157 + 3227 6157 15608 32 0 4 424 0 1 674 0 4 99 0 1 15 0 1 1064 0 3 608 chain 19209 chr4 191154276 + 97269948 97270188 7SK 245 - 6 244 129506 72 3 1 165 chain 36599 chr4 191154276 + 97278313 97278831 MER41C 542 + 0 521 74100 294 32 31 12 2 5 6 0 1 172 chain 30156 chr4 191154276 + 97282475 97282869 MLT2A1 477 + 0 395 84317 142 4 5 16 6 10 212 4 0 10 chain 27935 chr4 191154276 + 97285369 97285665 AluYb8 318 + 23 318 93224 109 1 0 186 chain 83341 chr4 191154276 + 97302393 97303449 MER11C 1089 - 16 1089 42185 10 0 1 142 1 0 54 0 1 127 0 1 38 7 9 132 0 1 171 1 0 65 0 4 62 0 9 246 chain 11637 chr4 191154276 + 97319059 97319220 L1PA8A 6298 - 9 169 153745 96 0 7 11 8 0 46 chain 96944 chr4 191154276 + 97322456 97323543 L1PA3long 6157 - 0 1088 37555 1032 0 1 55 chain 98373 chr4 191154276 + 97323543 97324618 L1PA3long 6157 + 3973 5048 37201 7 1 0 352 0 1 715 chain 545436 chr4 191154276 + 97330354 97336374 L1PA3long 6157 - 5 6157 2020 423 0 1 1395 0 1 3093 0 1 334 9 137 613 1 2 152 chain 8559 chr4 191154276 + 97343090 97343185 L1PA4 6152 - 11 106 167968 95 chain 33074 chr4 191154276 + 97367986 97368617 L1PA14 3548 - 102 703 79091 23 51 46 36 20 14 83 30 29 78 1 0 6 2 0 17 4 0 109 2 0 4 2 0 38 29 25 24 3 0 69 chain 47017 chr4 191154276 + 97409570 97410191 PABL_B 668 - 0 668 61189 236 6 10 72 1 0 57 0 44 124 0 1 79 1 0 45 chain 96258 chr4 191154276 + 97420460 97421721 L1PA8 5853 - 12 1261 37745 81 1 0 19 2 1 48 2 0 13 2 1 69 4 6 41 1 0 219 2 3 256 0 2 72 0 3 8 19 1 43 0 2 42 0 1 186 0 1 68 22 0 10 1 23 30 chain 98452 chr4 191154276 + 97421729 97422891 L1PA8 5853 + 3398 4563 37173 665 0 2 141 0 2 44 1 0 311 chain 22819 chr4 191154276 + 97428741 97429034 AluSc 308 + 11 305 116493 133 5 6 155 chain 4356 chr4 191154276 + 97443026 97443124 LTR12C 1709 + 654 711 202489 22 41 0 35 chain 28910 chr4 191154276 + 97466350 97466658 AluYb8 318 - 10 318 89419 308 chain 7241 chr4 191154276 + 97469463 97469607 MSTA 426 - 231 400 175822 58 13 37 29 25 26 19 chain 260958 chr4 191154276 + 97497043 97500000 L1PA4 6152 - 0 2959 15645 726 1 0 125 1 2 1571 0 1 293 0 1 240 chain 121120 chr4 191154276 + 97500000 97501376 L1P1 4361 - 1174 2542 30662 10 1 0 719 7 0 639 chain 90843 chr4 191154276 + 97508558 97509586 L1PA5 6144 + 5110 6141 39342 187 0 4 122 1 0 718 chain 19126 chr4 191154276 + 97548579 97548840 AluSc8 310 + 57 305 129754 61 1 0 10 1 4 133 6 0 25 9 0 15 chain 57442 chr4 191154276 + 97553354 97554120 LTR12 884 + 0 859 54270 25 1 0 228 0 91 34 2 0 70 0 3 8 11 8 298 27 32 62 chain 28763 chr4 191154276 + 97572114 97572420 AluYb9 318 + 0 305 90050 200 1 0 105 chain 6960 chr4 191154276 + 97588426 97588504 L1PA3long 6157 + 6079 6157 177752 78 chain 31501 chr4 191154276 + 97604874 97605448 L1PA15 4387 - 33 583 81644 25 5 0 7 0 1 6 3 1 44 13 11 42 2 1 12 4 0 19 1 0 43 16 15 18 30 29 131 9 11 5 1 0 44 2 0 56 5 0 21 2 0 8 chain 123576 chr4 191154276 + 97640852 97642572 L1PA11 4918 - 3107 4910 29847 44 1 2 356 0 1 95 0 1 567 49 51 225 0 1 132 0 84 35 5 4 33 1 0 49 8 6 10 16 18 12 2 1 6 2 0 36 2 0 34 chain 26822 chr4 191154276 + 97647249 97647531 AluYg6 310 - 8 290 96905 282 chain 6286 chr4 191154276 + 97664141 97664277 LTR12C 1709 + 773 1068 182917 37 0 200 33 41 0 25 chain 22266 chr4 191154276 + 97671374 97671721 THE1B 368 - 0 368 119051 77 3 0 42 42 52 28 1 0 114 0 15 40 chain 65220 chr4 191154276 + 97714683 97715492 L1PA8A 6298 - 7 820 50462 794 4 8 11 chain 209808 chr4 191154276 + 97716581 97718888 L1PA3long 6157 - 0 2307 18503 259 1 0 1565 0 1 482 chain 133271 chr4 191154276 + 97718888 97720368 L1PA3long 6157 + 2364 3843 27311 1156 1 0 323 chain 5105 chr4 191154276 + 97720904 97721088 L1MD2 1676 + 1166 1350 194034 23 104 105 29 1 0 27 chain 12091 chr4 191154276 + 97777188 97777325 L1PA2 6032 + 5893 6032 151832 123 0 2 14 chain 508330 chr4 191154276 + 97783687 97790164 L1PA7 6471 + 3 6469 6294 33 14 1 131 32 33 201 26 0 9 0 1 244 4 11 573 23 24 1213 7 8 146 0 1 112 0 13 113 1 0 4 0 1 954 2 0 395 1 3 108 0 1 38 6 2 142 1 3 486 4 3 588 0 4 18 2 1 288 17 18 431 9 9 82 0 1 19 chain 363016 chr4 191154276 + 97790336 97794307 L1PA2 6032 - 6 4243 11292 14 1 0 832 0 4 2044 0 3 710 3 263 367 chain 8729 chr4 191154276 + 97820543 97820647 L1PA7 6471 + 6363 6467 167033 104 chain 55207 chr4 191154276 + 97821988 97822602 L1PA5 6144 - 1700 2316 55522 132 0 2 482 chain 146707 chr4 191154276 + 97822602 97824723 L1PA5 6144 + 4458 6134 25052 1303 446 0 49 7 8 316 chain 429201 chr4 191154276 + 97846255 97851689 HERVL-int 5654 + 138 5654 9329 90 0 3 33 0 2 73 5 6 392 0 4 101 0 1 24 9 18 341 0 1 386 7 8 119 5 9 98 6 5 733 10 11 39 0 18 784 1 2 117 3 5 371 0 2 28 2 0 40 0 1 103 2 1 165 27 30 317 2 8 80 8 16 144 4 5 121 0 1 289 6 9 177 0 5 114 0 8 58 chain 33222 chr4 191154276 + 97851689 97852129 MLT2A1 477 + 0 475 78847 169 3 1 12 0 1 21 0 1 102 0 1 75 23 57 35 chain 3687 chr4 191154276 + 97878391 97878471 LTR49 580 + 478 559 212132 6 2 0 34 2 4 9 9 10 18 chain 16378 chr4 191154276 + 97878591 97878893 THE1B 368 + 0 306 137264 151 89 93 62 chain 9951 chr4 191154276 + 97886009 97886136 MER85 139 + 0 137 160829 90 0 10 37 chain 101999 chr4 191154276 + 97886940 97888133 L1PA6 6164 - 2 1198 36158 329 0 1 343 0 1 44 0 1 477 chain 112620 chr4 191154276 + 97888133 97889471 L1PA6 6164 + 3646 4965 33496 151 0 8 17 34 0 315 1 2 613 1 6 202 0 1 4 chain 24608 chr4 191154276 + 97896753 97897013 AluYa5 310 - 13 273 106953 260 chain 29182 chr4 191154276 + 97897220 97897531 AluYa5 310 - 0 310 88138 184 1 0 126 chain 66897 chr4 191154276 + 97899935 97900700 L1PA7 6471 + 5627 6397 49684 74 0 2 434 0 3 257 chain 19096 chr4 191154276 + 97903228 97903462 L1PA8A 6298 - 513 747 129353 234 chain 23580 chr4 191154276 + 97903462 97903744 L1PA8A 6298 + 5259 5541 112689 282 chain 8752 chr4 191154276 + 97933373 97933848 MLT2B1 522 - 8 522 166913 42 117 169 27 124 88 52 83 106 30 chain 101555 chr4 191154276 + 97956993 97958243 L1PA7 6471 - 1 1274 36382 192 0 1 633 5 19 13 9 0 16 6 12 326 0 11 50 chain 17242 chr4 191154276 + 97972715 97972899 AluYg6 310 - 0 184 134949 184 chain 28714 chr4 191154276 + 97980574 97980879 AluYg6 310 + 0 305 90277 305 chain 7287 chr4 191154276 + 97997171 97997279 MER21C 908 + 710 818 175540 12 1 3 22 1 0 14 1 0 57 chain 5070 chr4 191154276 + 98017654 98017858 Tigger3a 397 - 185 259 194431 12 130 0 62 chain 39217 chr4 191154276 + 98018056 98018544 MER9a3 513 - 0 513 70436 77 0 2 97 0 21 60 1 0 76 0 1 159 0 2 18 chain 355704 chr4 191154276 + 98018544 98022704 HERVK9-int 4720 - 0 4586 11455 245 0 1 421 1 0 1264 6 7 1033 0 426 1161 1 0 28 chain 36858 chr4 191154276 + 98023266 98023741 MER9a3 513 - 0 498 73722 79 0 1 96 0 21 132 4 5 164 chain 11369 chr4 191154276 + 98036784 98037015 MER4D 903 - 226 468 154820 12 7 0 56 38 40 64 1 15 13 8 9 21 0 1 11 chain 43873 chr4 191154276 + 98038311 98038901 L1PB1 5432 - 754 1341 64365 57 4 1 43 0 1 62 17 16 407 chain 4296 chr4 191154276 + 98047599 98047650 L1PA15 4387 + 2531 2582 203291 51 chain 10602 chr4 191154276 + 98058154 98058322 LTR7 482 - 12 184 157810 37 13 14 78 4 0 6 1 5 19 0 3 10 chain 186298 chr4 191154276 + 98058359 98060779 HERVH-int 3825 - 1124 3803 20394 24 2 1 581 4 9 394 1 6 83 0 1 117 0 5 13 0 1 36 9 0 204 15 0 446 2 1 38 0 268 52 12 11 16 0 1 246 1 0 4 0 1 120 chain 114232 chr4 191154276 + 98082044 98083341 L1PA4 6152 + 4830 6152 33017 677 0 1 38 1 20 575 0 5 6 chain 31715 chr4 191154276 + 98085800 98086251 MLT2A2 560 - 1 560 81309 146 32 141 92 1 0 180 chain 64548 chr4 191154276 + 98103101 98103896 LTR12 884 + 0 869 50778 25 1 0 29 0 1 64 0 25 58 0 2 115 0 25 11 0 22 492 chain 12772 chr4 191154276 + 98107158 98107312 L1PA7 6471 - 9 163 149167 154 chain 29126 chr4 191154276 + 98133385 98133689 AluYa5 310 - 6 310 88432 304 chain 430245 chr4 191154276 + 98175763 98180950 L1PA4 6152 - 6 4994 9304 44 5 6 664 0 3 121 0 4 467 0 1 546 0 1 606 0 1 172 0 1 1306 223 11 69 0 1 964 chain 20043 chr4 191154276 + 98179694 98179906 L1PA2 6032 - 1 213 127000 212 chain 118784 chr4 191154276 + 98192101 98193438 L1PA5 6144 - 4 1342 31499 253 1 0 593 0 1 196 1 2 293 chain 276411 chr4 191154276 + 98193438 98196638 L1P1 4361 + 1114 4320 14846 1018 0 1 62 0 2 978 1 2 190 0 1 135 0 1 233 0 1 44 0 1 367 1 0 155 1 0 15 chain 92301 chr4 191154276 + 98202484 98203517 L1PA3long 6157 - 15 1047 38880 244 1 0 788 chain 7204 chr4 191154276 + 98203519 98203595 L1PA3long 6157 + 5016 5092 176047 76 chain 186953 chr4 191154276 + 98203688 98205899 L1PA6 6164 + 3956 6160 20338 16 8 0 398 0 4 480 0 1 76 18 9 176 0 1 197 2 5 691 0 1 149 chain 70500 chr4 191154276 + 98213104 98214120 L1MA2 4263 - 205 1211 48164 13 0 3 7 0 1 66 12 10 95 0 1 53 3 0 142 11 10 70 8 3 11 2 0 148 0 3 231 12 6 24 4 5 104 chain 14728 chr4 191154276 + 98234803 98234978 L1PA3long 6157 - 0 171 142174 15 6 2 154 chain 188530 chr4 191154276 + 98246212 98248652 L1PA8A 6298 - 7 2441 20190 9 9 0 6 0 9 79 2 3 157 33 7 249 12 9 189 4 7 24 0 1 52 2 1 168 13 31 350 0 1 4 1 0 1063 0 1 14 chain 272518 chr4 191154276 + 98258692 98262730 L1PA10 4194 + 168 4149 15047 7 2 0 14 15 8 10 2 0 9 36 29 5 1 0 22 147 115 8 4 0 3 1 0 5 1 0 85 2 0 80 0 7 185 0 2 62 0 2 63 2 12 305 36 9 111 0 5 124 86 90 83 10 12 283 14 5 681 8 9 33 1 0 216 0 7 6 7 0 70 6 8 213 5 3 5 0 2 130 8 14 59 0 1 124 1 2 21 0 1 337 1 2 210 3 0 30 8 5 32 chain 121095 chr4 191154276 + 98277450 98279041 THE1A-int 1579 - 0 1579 30669 198 18 20 311 9 2 79 1 16 145 0 1 150 0 1 4 0 2 18 1 2 108 31 3 446 0 1 72 chain 200466 chr4 191154276 + 98282867 98285843 L1PA7 6471 - 2 2501 19176 64 0 2 5 2 0 340 0 1 291 0 1 87 0 3 29 24 22 18 0 4 6 3 4 86 494 9 199 0 1 301 14 11 8 0 1 690 0 1 315 chain 25371 chr4 191154276 + 98292438 98292813 THE1B 368 + 0 368 102828 47 0 9 8 27 18 90 2 1 19 6 0 176 chain 32545 chr4 191154276 + 98300834 98301289 MLT2A1 477 + 0 477 79952 168 5 2 11 0 1 22 0 1 151 4 3 35 22 46 37 chain 371523 chr4 191154276 + 98301292 98305866 HERVL-int 5654 + 1 4630 11040 5 0 2 82 0 1 83 0 2 18 1 2 32 0 3 146 6 0 12 0 3 177 1 0 25 2 0 6 4 5 20 1 7 92 0 1 254 0 1 44 0 1 699 0 2 7 0 2 65 1 17 666 2 1 53 0 7 112 0 1 188 0 1 117 2 17 1379 1 0 271 chain 15130 chr4 191154276 + 98305866 98306171 MLT2A1 477 + 236 477 140974 135 3 0 26 86 29 11 7 3 37 chain 508059 chr4 191154276 + 98318550 98324962 L1PA7 6471 - 3 6471 6313 7 4 0 146 2 0 5 11 12 193 0 18 467 10 13 96 0 54 314 0 22 172 2 0 34 0 1 85 5 6 49 0 1 103 4 5 5 1 0 486 0 1 476 0 1 165 0 1 44 6 5 773 0 4 63 52 4 60 0 2 546 1 0 683 7 8 384 20 21 181 6 1 339 3 0 158 0 10 244 chain 7102 chr4 191154276 + 98329477 98329568 MER4B 649 - 10 102 176741 6 1 0 53 0 1 16 0 1 15 chain 214896 chr4 191154276 + 98338779 98341392 L1PA7 6471 + 3670 6469 18172 370 2 8 181 0 142 4 0 1 230 0 2 63 0 4 642 0 1 303 1 0 77 0 2 389 10 38 266 7 8 68 chain 198915 chr4 191154276 + 98345869 98348174 L1PA5 6144 - 4 2312 19286 334 0 1 829 1 2 360 0 1 435 0 1 4 1 0 341 chain 263512 chr4 191154276 + 98348723 98351655 L1PA3long 6157 - 4 2938 15507 1784 0 1 1075 0 1 73 chain 28445 chr4 191154276 + 98356565 98356928 THE1B 368 + 7 368 91395 165 2 1 121 1 0 74 chain 6140 chr4 191154276 + 98358768 98358907 LTR12C 1709 - 679 899 156040 20 43 6 49 0 118 27 chain 16026 chr4 191154276 + 98358913 98359126 LTR12C 1709 - 623 919 138292 67 5 46 94 0 42 47 chain 7305 chr4 191154276 + 98359800 98359930 MSTB 430 + 254 389 175401 27 0 1 21 25 30 32 1 0 24 chain 29982 chr4 191154276 + 98375383 98375700 AluYb8 318 + 1 318 84863 317 chain 5280 chr4 191154276 + 98385416 98385478 MER2 342 + 140 202 192200 62 chain 89952 chr4 191154276 + 98393973 98395034 MER11C 1089 + 0 1073 39668 69 1 0 180 0 1 67 0 4 77 0 1 154 0 1 4 1 0 132 0 4 109 0 3 267 chain 356999 chr4 191154276 + 98403455 98408302 L1PB1 5432 + 546 5343 11433 64 0 3 190 0 1 16 0 1 438 0 1 137 21 7 165 0 6 134 0 1 26 1 0 54 0 1 224 2 1 146 0 1 211 0 4 77 7 8 36 0 1 75 2 7 404 0 2 279 0 3 180 1 0 283 0 4 127 1 0 88 13 16 13 1 12 33 0 1 326 1 3 18 0 17 56 1 0 4 4 6 67 0 1 103 0 1 73 1 3 67 0 1 330 31 0 11 51 0 24 25 20 11 2 0 50 1 0 18 1 0 44 1 0 20 3 0 3 9 0 23 3 1 4 1 0 11 chain 227956 chr4 191154276 + 98448154 98450927 L1PA7 6471 - 1 2796 17421 12 0 2 323 1 0 154 0 3 74 1 0 281 1 0 157 0 1 146 1 0 337 0 1 356 0 17 346 2 3 421 0 1 160 chain 515617 chr4 191154276 + 98458219 98464266 L1PA5 6144 + 3 6125 5605 1211 1 4 88 1 0 1315 15 5 68 10 86 136 0 1 237 0 2 463 1 6 113 0 1 1424 1 2 5 0 1 146 0 1 118 2 1 438 6 2 248 chain 50648 chr4 191154276 + 98471752 98472417 LTR12_ 688 - 0 688 58539 176 1 0 225 0 1 118 2 1 27 26 10 24 1 42 39 1 0 25 chain 506015 chr4 191154276 + 98482048 98487732 L1PA3long 6157 - 445 6151 6463 398 0 4 358 0 7 1685 0 4 551 0 5 115 0 1 1586 0 1 991 chain 41413 chr4 191154276 + 98487733 98488193 L1PA3long 6157 + 5697 6157 67402 460 chain 26018 chr4 191154276 + 98492599 98493014 MER4E 760 + 335 755 99955 25 80 81 294 0 4 16 chain 20750 chr4 191154276 + 98494933 98495187 PABL_B 668 + 0 254 124788 254 chain 68257 chr4 191154276 + 98515996 98516760 L1PA5 6144 + 5379 6144 49136 513 0 1 251 chain 538945 chr4 191154276 + 98554639 98560645 L1PA3long 6157 + 7 6147 3002 145 0 1 72 0 1 138 0 1 403 8 136 164 0 2 4832 4 5 240 chain 57953 chr4 191154276 + 98571451 98572184 MER4E1 777 - 0 771 54001 76 0 33 112 10 18 124 0 1 388 4 0 19 chain 7339 chr4 191154276 + 98583075 98583170 L1P4 1494 - 987 1082 175159 95 chain 29486 chr4 191154276 + 98590665 98590974 AluYb8 318 + 0 309 86683 309 chain 185207 chr4 191154276 + 98599778 98601818 L1PA3long 6157 - 0 2038 20478 1808 2 0 230 chain 50602 chr4 191154276 + 98616010 98616705 L1PBa 3878 + 3050 3733 58576 170 3 0 55 6 0 179 1 2 222 31 28 8 1 0 19 chain 60211 chr4 191154276 + 98618027 98618763 HERVK9-int 4720 + 3980 4718 52723 276 3 5 444 1 0 4 0 1 8 chain 418916 chr4 191154276 + 98619278 98624501 HERVL-int 5654 - 392 5654 9560 111 5 1 351 0 1 468 1 7 425 0 3 371 0 1 248 3 6 99 11 13 95 1 0 4 0 1 410 0 1 91 17 23 48 2 1 250 1 0 255 0 1 78 4 16 157 0 2 397 11 12 39 0 2 313 0 1 15 0 1 827 0 1 43 0 1 72 chain 34790 chr4 191154276 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46 0 2 589 0 1 1093 1 0 12 1 0 67 0 3 318 4 3 512 1 2 263 0 4 272 3 2 671 0 5 45 0 1 435 0 2 144 0 5 214 chain 48286 chr4 191154276 + 98709085 98709868 L1MA3 4352 - 0 754 60257 22 6 2 14 28 26 6 1 0 23 2 0 29 5 1 25 0 2 15 1 0 59 54 35 98 5 7 390 chain 532711 chr4 191154276 + 98716357 98722474 L1PA5 6144 - 8 6144 3885 330 0 1 57 4 0 1089 0 1 4 1 0 116 0 6 188 0 8 706 1 2 376 0 5 1176 0 1 679 0 1 363 1 0 24 0 1 1002 chain 23885 chr4 191154276 + 98735696 98736126 MLT2A2 560 + 0 560 110998 169 60 58 68 30 139 24 0 5 35 7 25 37 chain 54399 chr4 191154276 + 98737031 98737671 L1PA7 6471 - 3 639 56098 7 4 0 629 chain 3395 chr4 191154276 + 98738143 98738184 MLT2B1 522 + 467 508 217191 41 chain 505132 chr4 191154276 + 98749244 98755664 L1PA7 6471 + 2 6465 6528 90 0 1 310 3 0 10 16 15 244 0 11 80 4 14 72 1 0 59 0 3 27 7 6 170 2 0 99 7 11 474 1 0 37 13 15 887 1 2 45 0 1 23 0 1 438 6 7 330 3 2 63 7 11 370 7 8 268 5 1 38 0 7 5 0 1 284 0 4 128 0 2 307 1 2 37 2 1 170 0 4 15 0 1 410 1 2 83 12 7 94 1 0 50 0 3 603 chain 60575 chr4 191154276 + 98769781 98770437 L1PA2 6032 - 1133 1789 52444 656 chain 91626 chr4 191154276 + 98770437 98771448 L1PA2 6032 + 4884 5895 39081 1011 chain 49368 chr4 191154276 + 98782786 98783335 L1PA5 6144 + 1692 2241 59473 549 chain 296902 chr4 191154276 + 98783358 98786748 L1PA5 6144 + 2241 5643 13595 1261 1 0 357 2 0 68 0 3 413 0 8 277 1 0 802 0 5 208 chain 21512 chr4 191154276 + 98786748 98787005 L1PA5 6144 + 5880 6138 122093 167 0 1 90 chain 6160 chr4 191154276 + 98798432 98798525 L1MA7 2200 + 1282 1376 183884 39 7 8 47 chain 3941 chr4 191154276 + 98804594 98804669 L1MCc 1008 + 556 633 208246 44 18 20 13 chain 12968 chr4 191154276 + 98809962 98810296 MSTA 426 + 51 426 148357 44 144 174 31 1 12 114 chain 66688 chr4 191154276 + 98820085 98821097 L1PA14 3548 + 2389 3379 49793 74 0 1 4 2 0 63 6 5 153 1 0 231 1 2 16 3 1 11 5 3 45 13 9 103 2 0 4 2 0 17 2 0 5 2 1 62 6 7 15 1 0 106 19 14 38 chain 479304 chr4 191154276 + 98824755 98830161 L1PA3long 6157 + 4 6142 7751 23 0 13 112 13 14 605 9 133 175 6 3 358 0 1 736 0 1 162 0 590 246 0 1 2133 0 4 828 chain 12812 chr4 191154276 + 98836004 98836206 L1MB3 1562 - 152 361 149005 59 1 0 30 3 6 21 12 15 42 0 2 34 chain 15555 chr4 191154276 + 98839766 98840115 L1PB1 5432 + 5114 5430 139714 20 2 0 12 1 0 14 4 0 8 6 4 48 2 1 16 1 0 42 20 17 15 9 0 15 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 18 1 0 4 1 0 4 chain 88055 chr4 191154276 + 98844222 98845452 LTR12C 1709 + 0 1709 40352 190 34 268 16 3 0 18 1 3 224 0 118 220 0 4 10 0 47 25 10 18 46 24 0 17 12 5 227 0 101 70 1 0 82 chain 350480 chr4 191154276 + 98878337 98883478 L1PB1 5432 + 560 5404 11583 145 8 9 42 0 1 77 0 9 59 1 0 5 1 2 68 0 1 253 3 4 174 314 0 134 8 6 168 0 21 513 39 42 182 0 1 16 1 7 26 2 11 257 5 12 19 12 10 509 0 1 44 2 0 285 0 1 28 3 4 13 5 7 90 7 6 118 3 4 18 4 5 242 14 11 17 1 2 187 3 0 9 6 0 277 2 1 200 1 0 5 0 1 184 17 15 16 1 0 13 1 0 11 18 12 50 2 1 10 14 13 33 34 21 29 2 0 5 1 0 16 2 0 13 0 1 8 1 0 22 1 0 12 chain 489374 chr4 191154276 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chr4 191154276 + 98936211 98936519 L1PA7 6471 + 5316 5621 102590 5 3 0 300 chain 71339 chr4 191154276 + 98936520 98937363 L1PA7 6471 + 5621 6464 47773 221 2 3 613 1 0 6 chain 535592 chr4 191154276 + 98939172 98945294 L1PA4 6152 - 1 6113 3504 90 0 1 57 2 3 1076 3 5 2231 0 2 1451 0 1 400 24 7 91 0 1 159 1 0 537 chain 301861 chr4 191154276 + 98953622 98957250 L1PA7 6471 + 2835 6464 13327 400 0 1 35 7 8 4 0 1 196 18 6 11 1 0 243 0 1 257 0 2 668 0 4 418 6 7 524 1 0 80 2 1 95 0 1 7 0 3 507 0 1 148 chain 206034 chr4 191154276 + 98979030 98982306 L1PA14 3548 + 107 3480 18791 39 17 13 27 0 1 30 1 0 20 2 1 26 5 4 8 9 0 21 3 1 113 2 0 8 1 5 27 1 0 5 5 6 344 13 11 16 2 1 196 4 0 12 25 250 29 4 3 23 10 8 17 1 0 37 6 9 53 20 19 53 0 1 174 65 6 70 16 16 87 2 5 11 1 0 92 20 9 261 0 1 183 7 0 70 6 7 89 0 1 62 1 0 55 5 6 183 10 9 12 2 0 44 14 10 98 17 12 14 3 1 5 1 0 32 1 0 50 1 0 113 4 3 6 4 0 37 4 2 7 1 0 11 1 0 16 1 0 33 17 11 22 chain 5313 chr4 191154276 + 98983825 98983932 MADE1 96 - 0 85 191892 34 10 0 8 19 7 36 chain 143418 chr4 191154276 + 98991100 98993056 L1PA11 4918 + 2582 4509 25573 51 0 1 74 6 25 31 1 0 207 0 1 262 5 9 188 1 0 28 0 3 74 0 1 108 56 0 274 1 0 117 8 9 24 0 3 241 0 4 10 1 0 61 9 8 11 2 0 67 2 0 15 1 0 20 chain 25637 chr4 191154276 + 99026070 99026417 MER57A1 433 + 57 405 101556 202 25 26 120 chain 13014 chr4 191154276 + 99030029 99030180 L1PA7 6471 + 6308 6459 148189 151 chain 278886 chr4 191154276 + 99042474 99046523 L1PA10 4194 - 33 3796 14699 11 1 0 34 7 6 333 311 0 297 0 3 212 0 17 61 0 1 12 1 0 123 5 4 102 17 3 117 2 1 164 0 3 7 1 2 18 0 1 38 13 17 128 0 1 240 0 1 127 8 8 44 6 10 181 1 5 133 1 3 74 0 1 450 1 0 64 0 3 266 0 1 140 4 6 34 0 1 169 2 0 56 1 0 19 1 0 6 1 0 5 chain 60244 chr4 191154276 + 99062192 99062954 MER4E 760 + 0 760 52708 24 1 0 146 19 11 94 0 4 84 2 0 88 8 13 296 chain 19253 chr4 191154276 + 99066978 99067190 L1PA5 6144 + 5932 6144 129370 212 chain 10619 chr4 191154276 + 99076939 99077074 LTR8 732 + 587 724 157736 98 3 5 34 chain 22913 chr4 191154276 + 99081130 99081409 AluSp 311 + 22 297 116041 62 4 0 213 chain 35137 chr4 191154276 + 99085131 99085693 LTR8 732 + 11 616 76011 4 0 1 12 8 21 108 0 6 80 1 0 36 42 69 179 32 29 60 chain 6671 chr4 191154276 + 99094943 99095027 HY4 93 + 9 93 179891 84 chain 47699 chr4 191154276 + 99095281 99095906 PABL_A 660 - 0 660 60695 82 0 2 41 6 7 39 1 33 173 4 5 85 1 0 193 chain 39841 chr4 191154276 + 99123491 99123992 LTR10F 562 + 0 562 69552 174 0 80 12 21 0 147 0 1 90 0 1 57 chain 3286 chr4 191154276 + 99132513 99132557 MER57B1 401 + 292 334 219264 11 2 0 31 chain 79972 chr4 191154276 + 99193357 99194500 HSMAR1 1287 - 39 1262 43611 55 0 1 27 8 12 375 0 5 75 1 4 23 7 10 19 25 0 85 13 11 161 7 10 15 0 3 131 3 1 17 14 101 82 chain 296571 chr4 191154276 + 99200775 99204158 L1PA6 6164 - 12 3389 13613 134 3 4 1409 2 0 233 0 4 1177 10 1 415 chain 71295 chr4 191154276 + 99209198 99210008 L1PA4 6152 - 15 824 47802 733 1 0 76 chain 7183 chr4 191154276 + 99213626 99213726 L1PA7 6471 + 6366 6470 176189 35 1 5 64 chain 41463 chr4 191154276 + 99220063 99220548 L1PA6 6164 - 2 487 67331 485 chain 19068 chr4 191154276 + 99226264 99226516 L1PA10 4194 - 44 290 129914 34 3 0 34 1 0 28 1 0 62 5 4 84 chain 508271 chr4 191154276 + 99241582 99247082 L1PA2 6032 + 0 6030 6300 96 0 524 1073 0 2 1335 1 0 1132 0 3 1851 0 2 12 chain 107333 chr4 191154276 + 99251083 99252511 SVA_B 1603 - 6 1603 34883 130 0 106 407 3 0 7 5 92 69 6 9 40 39 0 23 4 44 409 0 1 189 46 11 16 17 26 18 chain 3442 chr4 191154276 + 99251750 99251789 SVA_B 1603 - 983 1022 99874 39 chain 20171 chr4 191154276 + 99261158 99261526 L1PA15 4387 + 3991 4357 126615 84 0 1 19 17 16 19 1 0 55 1 0 18 7 14 36 19 18 45 2 0 9 11 7 25 chain 161776 chr4 191154276 + 99269117 99270962 L1PA5 6144 - 3 1844 23095 6 4 0 324 1 0 932 1 2 577 chain 29486 chr4 191154276 + 99275203 99275512 AluYb8 318 - 9 318 86686 309 chain 114917 chr4 191154276 + 99287604 99289164 THE1B-int 1605 + 0 1605 32817 15 0 2 110 24 29 276 7 32 15 3 4 35 6 5 35 18 22 300 0 1 138 1 2 171 5 7 320 0 5 81 chain 24086 chr4 191154276 + 99289164 99289513 THE1B 368 + 0 367 109825 39 0 15 84 0 4 20 12 10 24 1 3 86 9 8 74 chain 4344 chr4 191154276 + 99328651 99328737 L1PB3 3668 + 3482 3563 202674 13 1 0 8 1 0 25 11 9 9 1 0 17 chain 13954 chr4 191154276 + 99333800 99334369 MER11A 1151 - 0 611 47929 30 6 10 24 3 2 9 0 2 79 0 1 56 0 4 40 0 32 18 0 1 284 1 0 19 chain 169694 chr4 191154276 + 99334372 99336220 L1PA2 6032 - 2 1856 22090 254 0 1 462 0 1 132 0 4 1000 chain 11379 chr4 191154276 + 99336231 99336695 MER11A 1151 - 611 1151 47929 128 0 1 19 3 4 74 38 1 8 0 11 66 1 0 19 1 3 51 14 113 42 chain 24539 chr4 191154276 + 99344679 99344984 AluSp 311 - 1 301 107315 21 5 0 279 chain 330373 chr4 191154276 + 99345948 99350785 L1PB1 5432 + 865 5419 12189 451 0 5 85 6 7 88 0 1 36 2 6 47 0 6 66 0 1 49 0 2 141 0 3 137 0 1 39 1 0 49 1 0 182 0 3 5 6 5 218 3 0 65 0 10 196 4 0 73 1 0 362 0 1 77 0 2 8 26 26 123 0 2 202 0 3 12 0 1 41 0 1 20 21 15 25 9 12 26 0 1 4 1 0 19 0 4 194 0 4 178 0 2 50 44 48 50 0 2 28 2 0 46 0 1 196 3 0 12 1 0 4 0 1 23 5 10 21 1 5 94 0 3 213 0 2 51 0 1 32 322 3 11 1 0 24 1 0 8 1 0 11 6 2 10 2 0 17 1 10 24 22 20 37 7 6 13 14 1 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 16378 chr4 191154276 + 99353085 99353274 L1PA5 6144 - 0 189 137263 189 chain 24154 chr4 191154276 + 99356956 99357230 AluY 311 + 16 291 109454 116 0 1 158 chain 7267 chr4 191154276 + 99376170 99376256 L1PB1 5432 + 4422 4508 175671 86 chain 9077 chr4 191154276 + 99376261 99376372 L1PB1 5432 + 4518 4629 165176 111 chain 21474 chr4 191154276 + 99376380 99376673 L1PB1 5432 + 4639 4946 122238 81 6 9 69 0 8 75 1 4 61 chain 9459 chr4 191154276 + 99376678 99376791 L1PB1 5432 + 4966 5079 163278 113 chain 13838 chr4 191154276 + 99376914 99377183 L1PB1 5432 + 5168 5416 145101 52 18 16 44 1 0 16 1 11 10 20 0 9 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 100055 chr4 191154276 + 99381915 99383138 L1PA7 6471 + 5209 6452 36760 383 7 11 18 0 3 169 0 1 224 11 14 281 3 12 127 chain 25132 chr4 191154276 + 99383202 99383585 THE1D 372 - 0 372 104114 147 0 1 30 2 0 7 23 30 49 0 1 23 30 12 72 chain 33715 chr4 191154276 + 99384219 99384659 MLT2A1 477 + 0 477 78069 117 0 1 51 4 1 9 0 1 24 0 1 180 1 38 54 chain 25283 chr4 191154276 + 99394603 99394866 AluYb8 318 - 12 275 103304 263 chain 74568 chr4 191154276 + 99400448 99401318 MER11D 897 + 1 897 46227 583 3 26 68 0 1 176 5 7 35 chain 47524 chr4 191154276 + 99410348 99411069 LTR17 781 + 0 781 60826 61 1 0 38 4 1 32 0 1 44 16 15 52 12 11 5 0 1 60 1 0 6 1 0 4 0 1 64 18 17 110 1 0 9 2 1 21 1 50 20 4 0 104 0 22 18 0 1 12 chain 477831 chr4 191154276 + 99452223 99458601 L1PA7 6471 - 3 6471 7804 9 2 0 142 1 2 305 3 5 12 0 3 251 3 6 109 0 3 273 0 368 87 0 1 347 1 7 58 6 0 204 0 2 436 3 5 4 0 1 85 1 0 8 1 0 13 0 1 10 8 9 80 315 0 90 17 3 32 1 0 87 1 2 704 0 1 71 15 0 1005 5 6 115 2 6 216 13 32 118 0 11 122 7 12 86 15 15 131 30 34 4 0 1 146 3 0 99 1 0 25 0 2 34 2 0 124 29 36 8 0 1 243 chain 7851 chr4 191154276 + 99469931 99470035 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6712 chr4 191154276 + 99627108 99627211 THE1C 375 - 269 375 179601 16 15 18 72 chain 24432 chr4 191154276 + 99629991 99630286 AluSp 311 - 15 311 107903 14 0 1 281 chain 95373 chr4 191154276 + 99640337 99641377 L1PA3long 6157 + 5117 6157 37992 1040 chain 373806 chr4 191154276 + 99644444 99648749 L1P1 4361 + 8 4319 10966 1833 0 5 924 0 4 390 0 1 12 1 0 328 1 2 9 3 0 431 0 1 200 1 0 157 1 0 14 chain 6001 chr4 191154276 + 99652388 99652459 L1PA4 6152 + 6061 6136 185232 25 0 4 46 chain 34223 chr4 191154276 + 99660028 99660414 L1PA7 6471 + 6081 6467 77319 386 chain 23615 chr4 191154276 + 99665903 99666235 THE1C 375 + 2 342 112498 112 0 2 24 1 5 28 20 22 147 chain 68870 chr4 191154276 + 99682958 99683717 L1PA3long 6157 - 58 817 48829 759 chain 190638 chr4 191154276 + 99683717 99685821 L1PA3long 6157 + 3252 5355 19987 1067 2 1 1035 chain 4296 chr4 191154276 + 99721853 99721997 MLT1F2 592 + 137 254 203296 50 80 53 14 chain 115174 chr4 191154276 + 99726906 99728208 L1PA5 6144 + 4843 6144 32721 26 1 0 1275 chain 12099 chr4 191154276 + 99734080 99734238 MER41B 635 + 481 635 151801 17 4 0 137 chain 153673 chr4 191154276 + 99736922 99739353 MER41-int 2638 + 489 2636 24131 13 12 24 276 6 20 213 4 5 35 1 0 21 2 5 28 1 0 194 1 0 28 1 0 143 1 5 171 1 0 36 3 4 137 9 6 51 322 0 7 2 0 188 14 7 13 5 1 194 0 9 129 0 1 69 0 14 100 chain 35555 chr4 191154276 + 99739362 99739831 MER41A 554 + 0 467 75471 93 7 8 40 8 0 68 0 9 125 4 0 48 0 1 5 2 1 69 chain 62819 chr4 191154276 + 99759235 99760117 HSMAR1 1287 + 8 1286 51532 114 13 21 11 0 5 46 0 10 75 0 1 43 1 0 1 0 264 398 22 125 35 0 2 60 0 2 30 5 7 28 chain 28247 chr4 191154276 + 99762125 99762477 THE1A 353 + 0 353 92126 63 0 2 44 2 1 243 chain 125763 chr4 191154276 + 99762477 99764032 THE1A-int 1579 + 0 1579 29167 199 0 1 458 0 13 259 1 2 160 3 1 5 0 2 149 0 1 197 0 9 65 1 0 58 chain 24866 chr4 191154276 + 99764032 99764391 THE1A 353 + 0 353 105540 102 9 8 124 14 8 70 1 2 39 chain 38911 chr4 191154276 + 99765551 99766088 MER41B 635 - 88 625 70853 65 27 26 329 5 6 111 chain 37177 chr4 191154276 + 99785683 99786156 LTR10F 562 + 0 562 73270 38 0 2 105 0 87 54 0 1 218 1 0 57 chain 4861 chr4 191154276 + 99806943 99807033 L1MB3 1562 - 7 92 196664 32 3 2 13 2 1 17 3 0 20 chain 7919 chr4 191154276 + 99857200 99857386 Tigger2b_Pri 1066 + 0 192 171533 31 50 48 30 13 17 34 0 4 28 chain 38908 chr4 191154276 + 99858119 99858628 LTR10G 522 + 0 499 70855 116 1 0 93 18 8 136 1 0 95 1 3 48 chain 29392 chr4 191154276 + 99863924 99864316 MLT2A1 477 + 2 398 87109 112 5 4 23 1 2 22 4 9 150 1 0 74 chain 23514 chr4 191154276 + 99870721 99870992 AluSc 308 + 28 299 113047 271 chain 29564 chr4 191154276 + 99878763 99879082 AluYb8 318 - 1 318 86362 191 2 0 126 chain 5975 chr4 191154276 + 99885658 99885826 MSTB1 431 + 28 197 185471 6 1 0 23 5 7 14 59 19 9 0 40 51 chain 8066 chr4 191154276 + 99890546 99890883 L1MA3 4352 + 4012 4343 170666 9 2 0 64 162 167 6 2 0 24 12 10 21 2 1 14 1 0 3 3 0 12 chain 40281 chr4 191154276 + 99904904 99905367 MER11C 1089 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191154276 + 100015101 100021143 L1PA5 6144 - 5 6141 5211 13 0 6 116 2 0 6 4 6 180 0 1 60 9 12 1635 1 2 932 1 0 12 1 0 60 0 2 818 0 7 4 0 1 428 0 4 490 0 64 87 0 1 142 13 14 163 0 1 157 0 4 708 chain 30305 chr4 191154276 + 100023050 100023368 AluYb8 318 + 0 318 83888 318 chain 23902 chr4 191154276 + 100025889 100026236 LTR17 781 - 455 781 110904 75 18 0 17 1 0 42 19 18 113 1 0 61 chain 184738 chr4 191154276 + 100026550 100028794 HERV17-int 4347 - 0 4335 20519 222 6 0 391 1 1673 577 4 0 13 2 0 8 1 0 4 0 1 40 2 1 9 0 6 47 1 2 32 0 1 555 0 430 198 2 0 24 2 0 35 2 1 50 1 0 15 chain 40419 chr4 191154276 + 100030613 100031105 LTR17 781 - 28 522 68706 364 0 3 59 1 0 68 chain 323049 chr4 191154276 + 100035230 100038963 L1P1 4361 - 635 4356 12479 50 4 1 2976 7 0 101 1 0 24 1 0 569 chain 29217 chr4 191154276 + 100070299 100070604 AluYa5 310 - 5 310 87975 305 chain 20680 chr4 191154276 + 100074686 100075014 L1PB2 3958 - 120 456 125033 63 1 0 18 0 2 6 6 4 11 26 38 14 2 1 64 1 0 72 1 0 43 chain 6213 chr4 191154276 + 100076854 100076931 MER41D 557 + 0 77 183476 77 chain 71777 chr4 191154276 + 100087449 100088493 MER41-int 2638 - 2 1008 47575 71 3 0 112 7 8 120 0 1 182 0 1 46 1 0 8 1 0 19 6 1 95 17 0 98 2 0 23 18 9 27 14 12 135 1 0 38 chain 477758 chr4 191154276 + 100091983 100097588 L1PA5 6144 - 0 5713 7805 621 1 2 147 36 0 65 1 2 28 1 0 27 1 0 53 1 0 44 9 8 988 0 1 48 0 2 184 0 138 111 1 0 742 1 2 154 0 4 755 2 1 782 0 1 368 20 21 414 chain 168074 chr4 191154276 + 100103082 100105414 L1PA8 5853 - 5 2075 22276 88 1 0 19 2 1 45 9 8 8 1 0 71 2 0 46 1 0 555 0 1 193 0 1 144 2 1 219 1 4 165 10 1 63 253 0 154 1 5 189 6 5 84 chain 18876 chr4 191154276 + 100104735 100104968 L1PA6 6164 - 8 240 130435 94 4 3 135 chain 41893 chr4 191154276 + 100108303 100108796 MER9a3 513 - 19 513 66765 43 3 5 433 1 0 13 chain 232754 chr4 191154276 + 100108798 100111627 HERVK9-int 4720 - 2 4586 17155 162 0 1 157 0 2 278 0 1 28 10 4 778 19 657 337 0 1120 1019 17 16 24 chain 44976 chr4 191154276 + 100112186 100112698 MER9a3 513 - 0 513 63083 402 0 1 110 chain 296145 chr4 191154276 + 100113402 100119769 HERVL-int 5654 - 1934 5654 13636 482 7 8 36 8 9 324 1 0 387 22 20 239 0 1 186 8 9 112 0 2 89 2675 16 893 0 2 122 0 1 86 0 1 256 0 1 19 1 5 414 chain 20851 chr4 191154276 + 100119899 100120261 MLT2A2 560 - 88 560 124458 9 0 5 42 5 114 68 68 65 131 2 1 37 chain 2693 chr4 191154276 + 100138792 100138904 L1MA4A 3247 - 75 185 230308 24 66 64 22 chain 224876 chr4 191154276 + 100144236 100146748 L1PA3long 6157 - 0 2512 17605 1759 1 0 710 0 1 42 chain 21505 chr4 191154276 + 100146795 100147080 AluY 311 + 19 297 122125 112 9 10 111 8 0 45 chain 370076 chr4 191154276 + 100148304 100153904 L1PA7 6471 - 4 4772 11094 8 2 0 140 1 0 4 6 7 37 6 5 196 7 8 269 10 11 58 4 7 61 0 1 26 0 6 20 3 1 397 0 1 6 3 13 419 10 11 48 0 1 220 0 1 149 1 0 100 1 0 95 1 0 177 9 8 53 0 12 285 7 6 114 7 2 132 0 1 4 1 0 299 0 1 193 0 1 212 0 1 18 0 1 188 1 2 129 9 10 317 863 0 85 0 2 189 chain 74243 chr4 191154276 + 100152768 100153630 MER11D 897 + 2 890 46392 575 0 23 177 0 1 84 0 2 26 chain 196965 chr4 191154276 + 100158358 100160899 L1P2 5180 - 2655 5178 19426 198 16 0 16 0 1 373 0 4 81 0 1 294 6 5 539 1 0 220 1 0 6 1 0 102 1 2 168 1 0 8 3 2 107 3 30 7 27 0 114 1 0 52 7 6 38 7 6 143 chain 64063 chr4 191154276 + 100162281 100163220 L1MA2 4263 - 149 1067 50983 10 1 0 35 2 0 11 7 0 92 1 0 8 1 0 157 33 31 108 2 1 76 9 5 6 2 0 378 chain 502570 chr4 191154276 + 100163386 100169818 L1PA7 6471 - 5 6468 6694 200 1 0 127 0 2 437 0 2 77 3 0 73 0 1 53 0 1 538 0 1 30 0 1 609 0 1 304 1 0 12 3 0 160 2 1 166 0 1 73 0 1 225 0 1 204 5 6 59 0 4 170 0 1 284 2 0 155 1 0 102 15 26 134 7 8 94 0 9 354 3 0 294 1 0 114 0 2 7 10 8 60 32 31 24 0 4 455 0 15 37 5 0 239 8 1 91 0 1 194 14 15 164 chain 11188 chr4 191154276 + 100175311 100175465 MER2 342 - 51 206 155472 36 5 6 113 chain 69793 chr4 191154276 + 100176148 100177682 L1PA7 6471 - 2 837 48474 10 2 0 54 27 0 531 667 0 103 9 6 131 chain 38215 chr4 191154276 + 100176859 100177323 L1PA7 6471 - 17 480 71819 77 1 0 386 chain 238947 chr4 191154276 + 100178623 100181707 L1PA6 6164 - 2 3077 16834 9 0 2 140 9 10 447 0 3 432 0 1 187 7 6 22 8 9 169 24 5 68 6 4 281 4 8 177 0 1 128 0 1 157 2 1 262 5 4 99 1 0 71 3 0 214 0 4 50 0 1 102 chain 5033 chr4 191154276 + 100186022 100186084 MLT1C 463 + 361 423 194797 62 chain 151100 chr4 191154276 + 100189923 100191880 L1P2 5180 - 3189 5178 24460 1036 0 25 137 7 6 272 1 0 4 15 14 149 36 36 65 1 0 95 0 11 139 chain 24279 chr4 191154276 + 100223826 100224120 AluY 311 + 3 292 108780 124 5 0 107 2 0 27 0 2 29 chain 19873 chr4 191154276 + 100224368 100224579 AluYa5 310 - 3 214 127582 211 chain 27398 chr4 191154276 + 100225542 100225842 AluYf4 310 + 0 300 94979 300 chain 10270 chr4 191154276 + 100230025 100230134 L1PA3long 6157 + 6048 6157 159287 109 chain 44218 chr4 191154276 + 100248903 100249422 MER9a3 513 - 0 513 63922 40 7 0 459 0 1 13 chain 115169 chr4 191154276 + 100269287 100270532 L1PA2 6032 - 5 1250 32726 1245 chain 5856 chr4 191154276 + 100271773 100271857 L1PB2 3958 - 120 203 186627 63 2 1 19 chain 52819 chr4 191154276 + 100274775 100275434 LTR12 884 - 166 884 57125 313 6 1 28 2 0 33 0 66 277 chain 68185 chr4 191154276 + 100276852 100277774 LTR12 884 + 0 884 49168 186 0 66 125 2 0 253 102 0 254 chain 4799 chr4 191154276 + 100277421 100277520 LTR12 884 + 634 766 160890 93 3 36 3 chain 10062 chr4 191154276 + 100281582 100281758 LTR12C 1709 + 654 1068 160264 59 28 107 17 1 160 71 chain 6198 chr4 191154276 + 100281782 100281856 LTR12C 1709 + 654 728 183599 74 chain 39624 chr4 191154276 + 100288211 100288719 MER9a3 513 + 0 513 69857 18 0 2 19 1 0 4 0 1 66 0 1 147 1 0 227 6 9 19 chain 377841 chr4 191154276 + 100289288 100293779 HERVK9-int 4720 + 134 4720 10820 28 1 0 133 0 2 293 0 2 533 4 2 272 0 4 335 5 4 140 0 7 614 0 1 548 0 4 243 0 1 7 1 0 454 9 10 143 1 0 351 2 1 72 0 80 302 chain 26875 chr4 191154276 + 100293779 100294206 MER9a3 513 + 0 431 96723 18 0 2 7 1 24 8 23 0 51 0 1 68 8 9 14 0 1 53 5 22 11 18 0 142 chain 5304 chr4 191154276 + 100294217 100294285 MER9a3 513 + 445 513 191984 68 chain 38015 chr4 191154276 + 100314774 100315281 L1PA8 5853 - 0 501 72108 93 1 0 19 3 2 44 1 0 15 2 1 71 5 3 39 1 0 51 1 0 87 0 2 74 chain 8623 chr4 191154276 + 100323182 100323283 MLT1A0 366 - 12 113 167623 101 chain 12344 chr4 191154276 + 100326912 100327170 L1PB1 5432 + 5161 5419 150850 7 2 0 51 1 0 18 1 0 6 6 8 30 1 0 15 2 0 6 37 45 26 1 0 19 1 0 12 1 0 15 chain 11064 chr4 191154276 + 100329901 100330043 L1PA8 5853 - 0 140 155951 93 1 0 19 3 2 26 chain 26640 chr4 191154276 + 100336939 100337295 L1PA8 5853 + 5504 5853 97506 60 1 0 45 2 0 59 12 11 11 1 0 50 2 1 19 1 0 93 chain 141759 chr4 191154276 + 100342030 100343771 L1PA8A 6298 + 4551 6291 25864 149 0 2 78 0 1 4 1 0 40 1 0 431 6 0 6 0 6 221 8 6 78 0 1 134 8 7 576 chain 195264 chr4 191154276 + 100344036 100346182 L1PA3long 6157 - 0 2150 19563 1803 0 4 343 chain 178965 chr4 191154276 + 100346182 100348231 L1HS 6032 + 1830 3880 21067 738 0 1 1114 1 0 52 1 2 143 chain 4129 chr4 191154276 + 100361086 100361153 MADE1 96 + 1 96 205516 20 0 11 14 2 19 31 chain 26731 chr4 191154276 + 100398071 100398352 AluYb8 318 + 31 312 97219 281 chain 42441 chr4 191154276 + 100407544 100408049 MER9a3 513 - 0 513 66091 257 1 0 179 0 8 55 0 1 13 chain 295311 chr4 191154276 + 100408049 100411607 HERVK9-int 4720 - 0 4666 13682 453 6 0 542 0 1 135 0 3 4 1 0 80 0 4 275 10 11 276 0 1 515 0 924 58 1 0 74 0 185 167 6 7 843 1 0 30 2 1 7 1 0 66 1 0 4 chain 1601 chr4 191154276 + 100412937 100413269 MER9a3 513 - 0 324 80569 165 8 0 66 0 1 23 1 0 69 chain 538118 chr4 191154276 + 100413285 100419415 L1PA4 6152 + 0 6137 3129 2095 0 1 1064 0 2 96 0 5 1038 0 1 1339 3 0 362 0 1 133 chain 844 chr4 191154276 + 100419435 100419610 MER9a3 513 - 324 499 80569 175 chain 43955 chr4 191154276 + 100435342 100436014 L1PB2 3958 + 3150 3803 64258 59 4 0 61 0 5 32 2 0 54 1 0 13 5 0 63 3 1 10 6 3 91 2 3 72 5 2 15 1 0 47 2 1 71 2 0 10 13 12 28 chain 48290 chr4 191154276 + 100457985 100458554 LTR22 571 + 0 571 60250 199 0 2 370 chain 4414 chr4 191154276 + 100489621 100489671 L1MC 810 + 341 391 201744 50 chain 7166 chr4 191154276 + 100557470 100557558 MLT1D 503 + 403 491 176294 88 chain 23704 chr4 191154276 + 100581525 100581835 AluY 311 + 9 304 112011 117 16 0 143 0 1 34 chain 340490 chr4 191154276 + 100592942 100597491 L1PA11 4918 + 1 4567 11887 12 1 0 29 2 0 36 4 1 34 1 0 14 3 1 14 5 7 31 1 0 33 9 6 227 0 4 37 0 1 86 5 6 292 0 1 532 1 8 26 3 13 230 0 1 114 14 17 427 2 0 78 0 2 260 0 1 88 10 13 79 0 1 215 0 1 348 0 1 118 1 0 69 0 2 662 0 11 141 3 0 6 0 1 69 2 1 60 9 7 13 1 0 19 21 13 10 13 9 14 2 1 13 chain 25784 chr4 191154276 + 100605485 100605822 THE1A 353 + 2 341 100940 78 3 6 5 3 0 19 1 0 82 0 3 146 chain 128527 chr4 191154276 + 100605834 100607397 THE1A-int 1579 + 0 1564 28443 336 0 2 238 1 0 988 chain 24844 chr4 191154276 + 100607412 100607769 THE1A 353 + 0 353 105655 84 0 1 25 1 0 36 38 35 82 1 0 90 chain 11666 chr4 191154276 + 100616078 100616227 L1PA16 3655 - 118 267 153619 149 chain 489630 chr4 191154276 + 100620345 100626348 L1PA7 6471 + 417 6457 7385 23 12 12 262 13 14 954 1 0 60 2 0 393 7 16 345 0 1 363 0 8 329 1 0 193 1 0 4 0 1 104 1 0 50 0 4 445 1 3 486 0 1 155 5 8 159 0 4 347 7 10 268 0 1 181 7 6 32 0 5 45 0 1 597 0 7 8 0 1 5 3 0 4 5 0 125 chain 6157 chr4 191154276 + 100638101 100638182 LTR48 738 + 0 108 183923 67 1 28 13 chain 42692 chr4 191154276 + 100647279 100647836 MER41A 554 - 0 554 65784 46 13 14 36 4 0 458 chain 101556 chr4 191154276 + 100647844 100649271 MER41-int 2638 - 2 1470 36381 80 1 2 31 1 0 292 3 5 119 0 1 22 5 6 175 4 5 62 0 16 40 0 5 52 28 27 72 1 0 5 0 1 198 3 8 88 0 1 13 5 0 9 31 47 80 1 0 6 chain 72164 chr4 191154276 + 100654338 100655412 MER11B 1079 - 0 1079 47399 29 2 1 130 0 1 38 0 1 101 48 40 20 1 0 78 25 33 83 0 1 78 19 20 4 1 0 60 7 10 20 0 2 160 1 0 169 chain 46166 chr4 191154276 + 100655528 100656082 MER41A 554 - 0 554 61879 554 chain 7291 chr4 191154276 + 100665404 100665504 MLT1F2 592 + 489 590 175506 66 3 4 31 chain 64509 chr4 191154276 + 100681838 100682699 L1PA8 5853 - 0 1044 50796 56 0 2 34 2 1 19 7 6 46 2 1 8 1 0 72 2 0 44 1 0 321 1 4 124 1 186 120 chain 24523 chr4 191154276 + 100685472 100685817 THE1D 372 + 6 372 107424 66 1 11 14 0 4 22 5 9 53 5 8 179 chain 8826 chr4 191154276 + 100686370 100686562 MLT1D 503 - 149 357 166519 30 7 8 66 57 72 32 chain 541178 chr4 191154276 + 100686601 100692619 L1PA3long 6157 - 8 6156 2638 486 2 0 620 3 0 1156 0 1 198 0 1 2783 0 128 392 0 4 227 0 1 151 chain 265472 chr4 191154276 + 100695814 100699883 L1PA10 4194 + 220 4161 15416 12 2 0 7 4 2 9 1 0 20 3 1 14 1 0 5 62 44 20 1 0 9 2 1 10 1 0 6 1 0 12 6 5 6 1 0 5 0 1 73 6 2 35 6 9 139 5 8 211 1 0 70 18 19 111 0 1 236 0 1 20 0 4 5 4 0 305 337 8 126 0 1 33 3 8 126 0 1 144 9 11 93 13 17 295 1 12 37 1 12 47 0 1 46 0 4 173 0 1 108 0 1 187 0 174 72 1 0 35 0 7 207 1 7 82 0 2 40 17 20 187 1 0 121 15 12 34 1 0 11 chain 3683 chr4 191154276 + 100703286 100703357 MER34A1 583 + 0 71 212190 22 1 0 7 12 13 29 chain 51349 chr4 191154276 + 100709401 100710346 L1MA3 4352 - 182 4315 58065 44 89 64 41 2 0 61 6 11 48 1 2 191 46 47 204 0 3200 29 1 2 26 0 1 12 25 31 119 chain 532190 chr4 191154276 + 100713812 100719914 L1PA5 6144 - 2 6144 3940 841 0 4 272 1 0 367 1 0 340 1 3 45 6 0 188 0 15 75 1 2 484 0 4 993 0 2 1062 0 3 590 0 15 555 0 1 25 0 1 255 chain 27244 chr4 191154276 + 100734383 100734746 THE1B 368 - 0 368 95452 142 0 2 51 2 1 68 0 1 61 0 5 21 3 1 15 chain 24393 chr4 191154276 + 100748418 100748719 AluY 311 + 0 308 108115 13 0 9 109 0 2 159 4 0 16 chain 4118 chr4 191154276 + 100801092 100801150 Tigger3a 397 - 89 144 205680 5 0 2 6 5 0 42 chain 6150 chr4 191154276 + 100823381 100823473 MER20 218 - 32 127 183983 15 2 1 14 1 5 60 chain 35340 chr4 191154276 + 100835392 100835805 L1PA5 6144 + 5724 6138 75749 86 1 2 326 chain 16613 chr4 191154276 + 100878628 100878850 THE1B 368 + 152 368 136628 20 3 2 21 4 0 98 1 0 75 chain 56872 chr4 191154276 + 100879186 100879855 L1PA5 6144 + 5458 6144 54620 518 0 18 132 1 0 18 chain 55737 chr4 191154276 + 100880505 100881347 L1PB2 3958 + 2999 3836 55279 63 1 0 71 0 1 173 3 1 19 1 0 36 1 0 14 10 20 38 8 6 10 4 0 94 1 0 69 1 0 53 24 23 40 0 1 12 12 10 22 1 0 61 chain 557000 chr4 191154276 + 100921681 100927710 L1PA2 6032 - 0 6029 608 6029 chain 5666 chr4 191154276 + 100941159 100941230 L1MC4 1079 - 331 402 188422 71 chain 3672 chr4 191154276 + 100946312 100946356 MADE1 96 - 52 96 212344 44 chain 453810 chr4 191154276 + 100948661 100954315 HERVL-int 5654 - 0 5654 8622 342 5 14 31 72 1 93 1 9 261 2 5 249 1 0 177 0 12 451 9 10 27 0 6 319 15 8 1020 2 1 113 0 3 560 1 0 4 0 1 666 0 8 100 0 1 32 0 1 92 17 18 144 0 5 387 0 2 63 0 6 350 0 14 48 chain 21034 chr4 191154276 + 100958187 100958525 THE1C 375 - 39 375 123794 111 0 1 7 41 38 22 0 20 13 20 0 124 chain 533712 chr4 191154276 + 100964687 100970630 L1PA3long 6157 - 5 6157 3738 671 0 1 77 2 0 947 0 1 1195 0 1 1344 0 1 1010 0 128 316 1 71 127 3 11 98 1 2 151 chain 123322 chr4 191154276 + 100972538 100974094 THE1A-int 1579 - 9 1579 29939 138 0 3 105 0 5 654 8 10 4 0 1 383 0 2 227 0 1 37 chain 23166 chr4 191154276 + 100974094 100974439 THE1A 353 - 0 346 114834 110 13 14 104 20 20 11 1 0 46 0 1 40 chain 100134 chr4 191154276 + 101010803 101012258 L1PB3 3668 - 290 1738 36735 88 1 0 84 16 8 99 15 17 78 10 7 9 2 0 151 0 4 68 2 0 81 0 1 16 1 0 12 4 0 176 0 1 10 0 1 122 0 3 6 3 1 100 37 42 38 4 0 36 0 3 186 chain 36603 chr4 191154276 + 101033421 101033882 LTR2 463 + 0 463 74093 56 0 1 305 12 13 88 chain 23831 chr4 191154276 + 101040568 101040840 L1PA4 6152 + 5865 6136 111306 33 1 0 238 chain 59937 chr4 191154276 + 101049927 101050688 L1PA8 5853 - 0 756 52853 93 1 0 19 2 1 52 2 1 5 1 0 74 2 0 44 1 0 78 0 1 257 0 1 130 chain 5491 chr4 191154276 + 101051112 101051187 MADE1 96 - 5 96 190128 40 3 19 32 chain 12533 chr4 191154276 + 101054763 101055133 MSTB 430 - 43 423 150104 82 0 5 9 1 0 20 187 193 71 chain 39517 chr4 191154276 + 101055302 101055800 L1PA6 6164 - 5 522 70000 6 1 0 350 24 44 117 chain 34697 chr4 191154276 + 101055807 101056196 L1PA6 6164 + 5215 5607 76627 103 0 4 82 1 0 203 chain 29077 chr4 191154276 + 101056205 101056510 AluYa5 310 - 5 310 88655 305 chain 11641 chr4 191154276 + 101073938 101074099 MER44A 345 - 31 193 153735 111 10 11 40 chain 256120 chr4 191154276 + 101075241 101078323 L1PA7 6471 - 11 3086 15928 21 18 7 112 0 5 6 8 1 50 1 2 11 0 1 375 5 6 160 3 2 80 1 0 119 0 3 1555 0 2 557 chain 23504 chr4 191154276 + 101087824 101088179 THE1A 353 - 0 344 113110 66 0 1 153 0 1 4 33 20 58 1 3 33 2 0 5 chain 117228 chr4 191154276 + 101116582 101118241 LTR12C 1709 - 25 1709 32046 100 256 0 200 0 2 154 7 11 99 4 2 4 1 0 98 0 278 736 chain 13309 chr4 191154276 + 101116682 101116893 LTR12C 1709 - 128 313 146811 105 1 0 4 35 9 23 0 1 43 chain 5727 chr4 191154276 + 101130334 101130426 MER21A 919 - 0 89 187872 9 2 0 27 3 0 30 0 1 8 1 2 12 chain 78958 chr4 191154276 + 101151723 101152766 MER11A 1151 - 0 1151 44079 40 0 4 123 0 1 16 1 0 15 4 6 28 26 0 35 17 48 150 0 1 145 0 1 97 0 1 146 4 0 66 1 0 67 1 100 61 chain 74681 chr4 191154276 + 101152766 101153785 MER4-int 2692 - 204 1223 46173 200 6 19 270 2 0 108 1 0 30 3 4 12 16 0 60 3 7 16 5 6 287 chain 29464 chr4 191154276 + 101171631 101172014 THE1D-int 1627 - 0 383 86780 32 0 1 46 0 1 34 1 0 210 2 1 58 chain 21287 chr4 191154276 + 101182033 101182292 L1PA7 6471 + 6205 6464 122909 259 chain 464111 chr4 191154276 + 101183688 101189380 L1PA7 6471 - 12 6471 8254 715 0 1 122 1 4 123 0 1 131 0 1 143 20 0 55 0 1 246 0 1 4 1 0 425 0 1 476 1 2 656 0 200 389 3 7 123 4 1 47 0 561 145 0 2 519 11 12 171 0 1 340 1 2 145 1 0 6 2 3 150 0 1 122 0 1 67 20 29 307 chain 4179 chr4 191154276 + 101232131 101232181 MER45A 178 + 75 125 204840 50 chain 25358 chr4 191154276 + 101244846 101245113 AluYg6 310 - 2 269 102903 267 chain 224266 chr4 191154276 + 101254709 101258471 L1PA14 3548 + 93 3485 17636 54 329 3 57 1 0 5 0 1 4 27 25 21 7 5 29 4 2 57 8 0 137 2 0 71 0 1 182 0 2 225 16 12 85 37 16 14 0 21 190 0 2 58 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chain 19198 chr4 191154276 + 101339843 101340206 L1MA2 4263 - 149 499 129533 9 1 0 36 19 13 91 53 51 57 1 0 47 21 18 28 chain 190334 chr4 191154276 + 101355095 101357601 L1PA11 4918 + 2081 4578 20014 108 7 8 59 1 5 144 0 9 133 24 11 639 1 2 461 2 0 35 0 1 29 1 0 591 0 8 69 2 1 23 0 3 54 2 0 11 72 58 11 1 0 13 2 0 11 chain 3800 chr4 191154276 + 101369008 101369117 MER58A 224 - 106 218 210394 12 25 26 31 13 15 28 chain 128917 chr4 191154276 + 101373908 101375341 L1PA4 6152 + 4713 6152 28330 356 0 1 6 0 6 815 1 0 255 chain 28331 chr4 191154276 + 101388553 101388858 AluYk12 309 + 0 301 91835 126 4 0 175 chain 5314 chr4 191154276 + 101394010 101394074 HSMAR1 1287 + 27 91 191884 64 chain 75050 chr4 191154276 + 101425509 101426507 LTR13 1007 + 0 1007 45996 73 2 0 307 9 10 238 2 1 55 8 0 8 0 19 104 0 1 80 0 1 59 29 27 24 chain 263847 chr4 191154276 + 101448535 101451713 L1PA6 6164 - 2 5334 15492 788 4 2154 23 0 1 170 0 1 505 0 12 50 2 0 132 12 0 598 2 0 292 0 5 146 0 1 454 chain 71138 chr4 191154276 + 101457148 101458265 L1MA1 4479 + 3119 4190 47872 33 7 5 20 3 0 74 1 0 14 4 0 56 0 1 67 3 0 131 2 0 195 1 0 24 5 3 13 1 0 55 45 44 5 1 0 21 0 2 65 5 0 6 4 0 116 12 11 27 2 0 35 1 0 9 1 0 11 24 10 18 chain 389467 chr4 191154276 + 101480112 101485520 L1PB1 5432 + 19 5424 10467 27 9 10 504 12 11 141 6 5 592 2 0 83 18 8 13 0 5 399 3 1 240 0 1 430 32 17 183 0 1 117 10 18 22 12 12 161 23 33 68 0 6 83 0 1 80 1 0 153 0 1 174 3 10 97 1 0 5 7 0 153 0 1 126 0 13 95 6 7 116 0 7 29 0 1 172 0 2 142 2 0 33 14 11 97 0 1 375 4 5 17 1 0 13 16 11 11 2 0 51 19 17 44 1 0 15 25 13 15 26 24 21 1 3 19 1 0 13 1 0 16 1 0 4 chain 20873 chr4 191154276 + 101489394 101489677 AluY 311 + 8 281 124386 44 14 9 34 1 0 31 4 0 155 chain 3140 chr4 191154276 + 101506737 101506773 MLT1A1 405 - 369 405 222188 36 chain 27419 chr4 191154276 + 101521899 101522205 AluYf5 307 + 0 306 94909 306 chain 124358 chr4 191154276 + 101528847 101530475 LTR12C 1709 - 0 1709 29582 61 134 3 417 0 4 107 2 0 6 1 0 74 0 200 730 3 8 48 0 6 45 chain 2896 chr4 191154276 + 101528909 101528948 LTR12C 1709 - 193 232 227109 39 chain 4068 chr4 191154276 + 101531914 101531960 MADE1 96 + 50 96 206340 46 chain 142258 chr4 191154276 + 101542855 101544956 HUERS-P3b-int 2065 - 34 2052 25764 88 1 0 60 4 0 52 3 1 11 4 1 16 2 0 73 3 1 89 1 0 18 23 20 84 4 2 44 1 0 82 1 2 166 0 1 76 0 3 154 0 2 41 0 8 40 0 3 37 1 0 15 1 2 11 1 0 54 18 17 60 82 12 92 1 2 9 4 1 41 3 0 224 1 2 220 17 14 42 1 0 25 chain 71499 chr4 191154276 + 101545001 101545855 L1PA7 6471 - 25 878 47698 315 1 0 538 chain 8026 chr4 191154276 + 101545862 101545959 L1PA14 3548 + 2048 2146 170896 44 0 1 53 chain 77854 chr4 191154276 + 101560498 101561709 L1MA1 4479 + 2962 4151 44588 15 0 1 4 3 0 176 2 0 19 4 0 74 1 0 14 4 1 116 12 7 20 0 20 89 5 4 54 22 13 126 1 0 24 2 0 16 1 0 71 5 4 13 8 6 10 1 0 12 3 4 72 1 0 4 4 1 126 1 0 29 2 0 35 1 0 9 chain 214439 chr4 191154276 + 101588094 101590513 L1PA4 6152 - 994 3414 18199 4 1 0 50 1 0 248 0 1 701 0 3 948 1 0 465 chain 84770 chr4 191154276 + 101590513 101591500 L1PA4 6152 + 5153 6152 41607 195 0 2 539 1 3 109 1 3 116 0 1 20 0 5 6 chain 51325 chr4 191154276 + 101598336 101598884 L1PA2 6032 - 2 550 58082 548 chain 18899 chr4 191154276 + 101614695 101615025 THE1B 368 + 0 354 130372 44 38 53 75 1 0 26 35 45 111 chain 41715 chr4 191154276 + 101619091 101619690 MLT2A2 560 - 14 560 67011 32 64 1 100 0 11 222 1 0 180 chain 44086 chr4 191154276 + 101626339 101626886 MER41A 554 - 2 554 64114 71 7 12 469 chain 6604 chr4 191154276 + 101632108 101632188 L1PA16 3655 - 92 172 180424 80 chain 54805 chr4 191154276 + 101639120 101639713 L1PA2 6032 - 576 1169 55836 593 chain 54682 chr4 191154276 + 101639713 101640295 L1PA2 6032 + 5447 6029 55918 582 chain 14515 chr4 191154276 + 101640892 101641216 L1PB1 5432 - 5 318 142836 5 2 0 18 15 13 21 1 0 24 2 0 15 7 4 29 26 23 30 0 10 14 2 1 52 16 10 12 1 0 12 1 0 11 0 1 8 chain 18147 chr4 191154276 + 101655967 101656177 L1PA4 6152 + 5939 6149 132466 210 chain 6327 chr4 191154276 + 101668821 101668891 L1PA3long 6157 + 6086 6156 182578 70 chain 78547 chr4 191154276 + 101670180 101671587 MER4-int 2692 + 74 1168 44244 25 2 0 8 25 22 20 11 9 56 0 1 475 2 4 72 0 3 12 1 14 42 17 0 151 311 0 20 0 2 26 0 1 131 chain 41480 chr4 191154276 + 101677459 101678001 MLT2A2 560 - 0 560 67310 147 3 14 57 0 7 335 chain 3256 chr4 191154276 + 101689728 101689762 tRNA-Gly-GGG 71 + 3 37 219878 34 chain 42430 chr4 191154276 + 101702939 101703404 L1PA4 6152 - 11 477 66106 102 0 1 363 chain 2563 chr4 191154276 + 101718864 101718910 MADE1 96 - 28 91 232341 23 6 23 17 chain 10458 chr4 191154276 + 101722899 101723016 L1PA5 6144 + 6026 6143 158450 117 chain 28879 chr4 191154276 + 101751946 101752259 AluYa5 310 - 1 310 89545 186 4 0 123 chain 28536 chr4 191154276 + 101756533 101756887 THE1A 353 + 0 353 91015 110 1 0 243 chain 491433 chr4 191154276 + 101783950 101790087 L1PA6 6164 - 2 6162 7300 49 0 1 93 19 0 7 1 20 613 0 1 69 0 1 523 22 0 70 0 2 524 14 10 11 0 4 234 0 1 685 0 4 20 1 0 29 1 2 353 0 1 621 0 2 387 0 11 362 0 1 314 26 27 21 14 17 26 0 1 241 6 23 214 1 0 118 8 0 37 16 17 299 0 6 88 chain 505227 chr4 191154276 + 101821326 101827735 L1PA7 6471 + 5 6468 6515 132 1 16 247 4 7 302 19 19 644 0 16 30 0 3 338 0 1 33 14 13 4 0 1 326 0 1 78 0 3 274 0 1 26 0 4 117 29 4 49 2 1 18 6 5 241 0 4 82 2 0 268 0 1 29 29 30 253 0 1 208 0 1 127 6 7 31 0 1 91 0 1 431 7 11 33 2 0 99 0 4 659 1 2 178 0 7 100 12 11 69 0 2 436 0 2 169 23 24 40 0 7 90 chain 6885 chr4 191154276 + 101834810 101834987 MER2 342 - 14 201 178310 26 75 85 76 chain 520440 chr4 191154276 + 101837526 101843459 L1PA4 6152 + 192 6143 5109 755 1 0 567 0 2 29 0 1 655 0 4 524 0 1 50 0 4 731 0 1 272 0 1 266 0 1 1408 0 6 373 1 0 55 1 0 245 chain 11006 chr4 191154276 + 101860320 101860468 L1PBa 3878 + 168 313 156183 45 1 0 24 2 0 76 chain 75013 chr4 191154276 + 101860475 101861918 L1PB1 5432 + 4279 5422 46008 229 13 12 4 0 1 101 137 2 176 2 3 151 0 1 144 134 2 10 5 0 23 1 0 8 1 0 6 11 7 9 2 0 34 3 1 17 2 1 16 1 0 44 1 0 12 24 15 18 9 6 12 2 0 26 1 0 22 1 0 12 1 0 18 chain 42712 chr4 191154276 + 101878196 101878675 L1PA3long 6157 - 0 479 65760 479 chain 10044 chr4 191154276 + 101880913 101881037 MER2 342 - 136 261 160352 110 0 1 14 chain 6831 chr4 191154276 + 101885079 101885159 L1PB1 5432 + 5023 5103 178716 80 chain 16127 chr4 191154276 + 101885280 101885557 L1PB1 5432 + 5168 5423 137976 52 2 1 10 8 7 58 1 0 4 2 0 8 9 0 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 3409 chr4 191154276 + 101912109 101912220 L1MA8 2339 - 2225 2333 216936 17 1 0 5 10 11 5 1 0 27 31 29 14 chain 209099 chr4 191154276 + 101915243 101918233 HERVH-int 3825 - 834 3825 18559 202 20 9 490 1 0 5 11 12 162 1 3 137 0 1 36 6 8 456 1 0 39 9 0 68 0 3 131 15 0 54 0 1 90 5 9 297 212 235 18 49 52 57 7 6 66 16 15 329 chain 12929 chr4 191154276 + 101988813 101988967 L1PA4 6152 + 5981 6136 148505 22 1 2 131 chain 63680 chr4 191154276 + 102013613 102014417 L1PA7 6471 - 19 807 51151 172 1 0 78 36 17 373 2 5 107 0 1 35 chain 19474 chr4 191154276 + 102014424 102014700 Tigger1 2417 + 2113 2382 128735 137 1 0 6 14 6 73 4 6 41 chain 507844 chr4 191154276 + 102049609 102056388 L1PA7 6471 + 3 6468 6340 226 0 15 13 20 5 149 0 1 266 31 32 146 0 1 263 0 2 360 8 7 17 1 0 693 0 10 284 354 0 138 5 1 62 3 1 698 0 1 109 9 8 38 0 4 240 0 1 183 4 5 4 1 0 501 0 1 86 1 0 4 1 2 91 7 11 121 0 2 138 8 6 440 3 9 201 0 4 18 10 9 69 0 4 6 7 8 40 1 6 22 4 2 320 0 10 344 4 0 7 chain 21888 chr4 191154276 + 102103877 102104212 THE1B 368 + 20 368 120671 16 4 19 50 38 37 30 2 1 195 chain 30123 chr4 191154276 + 102216176 102216492 AluYb8 318 + 0 316 84405 316 chain 16192 chr4 191154276 + 102280149 102280580 L1MC1 2226 + 1794 2184 137774 48 8 6 6 1 0 25 15 9 22 9 8 62 3 0 16 2 0 46 53 41 18 65 51 32 chain 88941 chr4 191154276 + 102293431 102294969 L1MA1 4479 - 293 1795 40027 14 31 21 9 1 0 35 2 0 102 0 1 49 17 13 80 1 0 15 3 5 5 4 0 11 1 0 52 9 19 16 2 0 14 12 11 133 0 1 39 27 24 116 21 24 61 5 0 49 38 34 30 0 1 19 9 5 22 2 0 171 2 0 27 1 0 92 9 4 58 1 0 4 29 29 81 1 0 6 chain 67125 chr4 191154276 + 102295388 102296651 L1M1 2793 + 660 1884 49605 42 40 27 11 8 4 15 195 175 69 1 0 179 2 1 68 3 0 6 1 3 10 15 14 17 0 1 176 4 7 34 1 0 4 0 1 11 2 1 36 6 5 11 14 15 66 2 0 159 4 5 51 chain 16946 chr4 191154276 + 102304152 102304365 L1PA7 6471 - 2 216 135739 148 3 4 62 chain 22310 chr4 191154276 + 102304979 102305249 AluY 311 + 32 298 118872 86 4 0 180 chain 388071 chr4 191154276 + 102305262 102311280 L1PB1 5432 - 10 5355 10515 18 1 0 13 1 0 14 8 7 24 2 0 15 1 0 4 2 0 30 24 20 41 1 0 15 2 1 52 2 0 9 2 0 3 2 0 9 1 0 9 1 0 24 1 0 11 3 0 15 0 11 67 320 15 32 0 3 5 3 0 26 0 3 18 0 6 75 12 0 9 14 21 78 1 0 93 5 2 179 2 1 347 18 14 351 11 1 43 0 5 60 6 9 79 13 10 244 0 1 15 310 3 24 5 6 14 4 1 329 0 2 44 1 0 22 4 1 319 1 0 155 10 7 60 10 8 73 0 1 23 0 3 265 0 3 191 0 1 167 17 0 133 0 1 4 7 0 9 1 0 217 14 0 4 0 1 188 7 8 209 0 1 691 chain 549298 chr4 191154276 + 102326824 102332852 L1PA2 6032 - 3 6032 1537 850 0 1 1101 0 1 2757 2 1 406 1 0 659 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chr4 191154276 + 102451509 102453642 L1PB1 5432 - 213 1991 27283 52 2 0 9 16 11 11 1 0 22 363 11 98 12 11 320 0 1 51 0 1 302 0 1 500 5 8 72 7 4 14 1 0 40 9 13 226 chain 28535 chr4 191154276 + 102475188 102475610 LOR1b 457 - 0 417 91021 61 10 13 177 22 15 45 2 0 14 4 5 87 chain 45799 chr4 191154276 + 102478865 102479418 L1PA8 5853 - 1101 1650 62236 382 2 0 36 2 0 131 chain 84583 chr4 191154276 + 102479418 102480506 L1PA8 5853 + 4762 5853 41686 247 0 2 360 0 3 190 1 0 44 2 0 62 0 2 6 26 27 35 2 1 19 1 0 93 chain 3392 chr4 191154276 + 102480540 102480583 LTR8 732 + 586 629 217251 43 chain 41967 chr4 191154276 + 102492138 102492666 MER41A 554 - 21 554 66665 93 0 1 26 0 4 409 chain 14174 chr4 191154276 + 102492689 102492915 MER89 557 + 217 442 143973 117 46 45 63 chain 173304 chr4 191154276 + 102497235 102499775 L1PA6 6164 + 0 6150 21675 315 1 0 95 2 1 5 0 1 612 0 469 12 370 3506 363 6 13 631 1 0 127 chain 15899 chr4 191154276 + 102524181 102524473 THE1D 372 - 41 352 138661 19 0 1 77 56 69 82 21 26 37 chain 5792 chr4 191154276 + 102527904 102527971 LOR1b 457 + 40 107 187240 67 chain 347993 chr4 191154276 + 102536661 102541454 HERVL-int 5654 - 0 4479 11666 274 1 4 147 48 18 114 0 30 39 5 4 253 6 0 7 3 9 32 11 11 406 0 4 240 11 14 241 331 0 25 0 1 894 0 2 542 1 0 92 1 0 470 0 3 31 4 0 6 9 13 54 0 1 43 0 1 214 0 1 29 4 5 205 chain 33491 chr4 191154276 + 102550049 102550531 L1PB2 3958 + 3368 3838 78423 6 2 0 65 2 0 13 3 0 49 0 1 36 1 0 79 1 0 64 5 4 68 2 0 21 2 1 63 chain 56003 chr4 191154276 + 102551996 102552701 LTR12_ 688 - 0 688 55119 402 2 1 98 1 0 17 24 7 70 1 3 90 chain 400778 chr4 191154276 + 102554059 102558855 HERV9-int 5642 - 820 5635 10062 9 0 1 58 4 0 132 0 3 370 1 0 1559 0 4 187 0 1 125 0 4 228 0 1 144 1 2 480 0 3 404 3 0 223 8 5 57 16 27 759 5 6 23 chain 53518 chr4 191154276 + 102558883 102559587 LTR12_ 688 - 0 688 56668 381 1 0 4 0 1 110 2 1 27 18 1 65 7 9 89 chain 24542 chr4 191154276 + 102587662 102588014 THE1A 353 + 0 352 107301 64 8 9 26 22 21 232 chain 116247 chr4 191154276 + 102596283 102597817 MER57-int 2662 + 99 1624 32358 9 1 0 76 0 5 118 5 4 145 3 1 171 0 1 39 5 0 148 2 0 218 0 3 24 0 1 34 11 3 138 0 1 4 7 6 96 1 0 54 0 1 225 chain 4864 chr4 191154276 + 102621894 102621989 MLT1F2 592 - 3 104 196646 51 24 30 20 chain 9705 chr4 191154276 + 102632562 102632675 L1PA16 3655 - 77 190 162059 113 chain 3995 chr4 191154276 + 102648804 102648849 MADE1 96 - 2 47 207454 45 chain 481655 chr4 191154276 + 102660083 102665612 L1PA5 6144 - 9 6144 7665 193 5 8 639 0 4 431 1 19 1171 3 0 340 0 1 835 0 1 180 0 1 501 0 1 917 0 580 313 chain 127419 chr4 191154276 + 102672713 102674162 L1PA5 6144 - 6 1455 28707 253 2 0 159 0 1 437 0 1 598 chain 32337 chr4 191154276 + 102697852 102698353 MLT2A2 560 + 0 560 80291 53 10 0 9 1 0 18 5 0 100 1 0 11 12 23 16 14 15 63 0 32 41 1 3 15 3 14 90 0 19 38 chain 85252 chr4 191154276 + 102719650 102720604 L1PA5 6144 - 531 1485 41440 954 chain 41276 chr4 191154276 + 102720604 102721450 L1PA5 6144 + 5629 6144 67565 134 327 0 30 3 0 12 1 2 325 3 1 11 chain 29222 chr4 191154276 + 102724872 102725182 AluYa5 310 + 0 309 87944 132 1 0 177 chain 40367 chr4 191154276 + 102729715 102730288 L1PB2 3958 + 3269 3835 68780 38 2 0 51 0 3 16 3 1 60 2 0 13 3 0 94 3 4 17 7 10 41 1 0 62 1 0 76 2 0 19 2 1 60 chain 12893 chr4 191154276 + 102738925 102739106 MER30 238 + 38 238 148659 74 4 17 21 4 10 78 chain 11139 chr4 191154276 + 102742647 102742792 L1PA14 3548 - 173 313 155674 34 4 0 9 1 0 97 chain 29194 chr4 191154276 + 102761114 102761424 AluYa5 310 - 0 310 88077 310 chain 38032 chr4 191154276 + 102761525 102762010 MER9a3 513 + 0 513 72084 93 17 18 77 0 28 42 1 0 255 chain 22562 chr4 191154276 + 102762799 102763044 L1PA3long 6157 - 15 260 117755 245 chain 21630 chr4 191154276 + 102767032 102767277 L1PA4 6152 - 9 254 121657 245 chain 18434 chr4 191154276 + 102767277 102767484 L1PA4 6152 + 5686 5893 131681 207 chain 14300 chr4 191154276 + 102768563 102768991 L1PB1 5432 - 8 379 143563 4 1 0 16 1 0 12 2 1 19 5 4 22 71 68 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103166771 LTR12C 1709 + 796 877 229929 22 1 41 18 chain 16408 chr4 191154276 + 103170706 103171276 LTR12C 1709 - 168 1008 137186 26 240 478 27 43 6 43 26 104 20 1 0 15 8 0 121 chain 7488 chr4 191154276 + 103171276 103171364 LTR12C 1709 - 689 777 140438 88 chain 525404 chr4 191154276 + 103193821 103200313 L1PA7 6471 + 7 6470 4643 100 8 9 51 0 9 44 20 5 17 6 21 147 1 2 480 4 0 6 1 5 658 2 1 733 0 1 339 29 0 130 2 0 221 1 0 626 2 0 27 0 1 179 6 5 750 1 0 4 0 1 244 0 1 56 6 10 59 1 0 606 1 0 66 1 0 99 1 0 466 6 0 121 4 3 160 chain 13542 chr4 191154276 + 103240521 103240851 MER31B 477 + 0 371 146204 50 100 157 14 1 0 48 4 3 42 13 2 5 3 0 50 chain 3573 chr4 191154276 + 103247861 103247906 Charlie1a 1436 + 1391 1436 214100 45 chain 52381 chr4 191154276 + 103250810 103251468 L1PA7 6471 + 2930 3596 57371 283 0 1 36 1 10 221 6 5 43 1 0 67 chain 73591 chr4 191154276 + 103251478 103252396 L1PA7 6471 + 3607 4523 46737 254 23 21 641 chain 11409 chr4 191154276 + 103252396 103252534 L1PA7 6471 + 4524 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422 chain 12950 chr4 191154276 + 103409838 103409997 MLT2A2 560 + 0 159 148432 159 chain 9723 chr4 191154276 + 103409997 103410115 THE1C 375 + 211 329 161972 118 chain 2474 chr4 191154276 + 103410202 103410233 L1PB1 5432 + 4601 4632 233367 31 chain 29468 chr4 191154276 + 103410237 103410671 L1PB1 5432 + 4632 5006 86764 139 60 0 235 chain 15147 chr4 191154276 + 103410912 103411200 L1PB1 5432 + 5159 5421 140924 9 2 0 52 2 1 16 1 0 43 1 0 16 4 1 14 10 0 15 3 1 5 1 0 14 2 0 24 1 0 23 2 1 10 2 1 16 chain 29066 chr4 191154276 + 103436264 103436566 AluYa5 310 - 8 310 88692 302 chain 160153 chr4 191154276 + 103491799 103493639 L1PA5 6144 + 4291 6139 23320 600 0 1 169 7 7 320 2 0 87 0 2 522 0 7 133 chain 60578 chr4 191154276 + 103538806 103539470 L1PA2 6032 + 5364 6029 52529 380 0 3 127 2 0 155 chain 21696 chr4 191154276 + 103558007 103558372 THE1B 368 + 1 368 121405 17 0 1 4 1 0 146 1 0 4 2 1 9 0 1 8 2 0 6 9 16 10 22 20 62 14 14 48 chain 18560 chr4 191154276 + 103564681 103565306 L1MB7 1623 - 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2 90 0 1 20 5 0 62 2 1 13 4 3 62 2 0 16 1 0 19 22 13 10 13 9 15 1 0 13 2 0 11 47 33 26 5 0 11 chain 20270 chr4 191154276 + 104603424 104603795 THE1D 372 - 0 372 126315 32 1 0 23 5 6 4 1 0 56 29 0 13 26 60 6 0 6 109 10 1 56 chain 239404 chr4 191154276 + 104607935 104610560 L1PA3long 6157 + 3526 6150 16802 2298 1 0 326 chain 42774 chr4 191154276 + 104612728 104613236 MER9a1 513 + 0 507 65686 39 1 0 4 0 1 412 2 0 15 4 5 31 chain 20438 chr4 191154276 + 104616422 104616741 Tigger2 2703 + 2265 2597 125787 60 15 18 26 2 1 28 16 19 38 0 4 106 0 4 28 chain 211800 chr4 191154276 + 104621855 104624210 L1PA4 6152 + 3786 6143 18372 168 0 2 2187 chain 518750 chr4 191154276 + 104628682 104634783 L1PA4 6152 + 10 6146 5297 724 1 0 71 5 1 1514 3 1 185 0 2 415 0 16 954 2 1 741 1 0 132 8 30 1029 0 3 209 0 1 107 chain 116271 chr4 191154276 + 104643820 104645205 SVA_B 1603 + 0 1603 32352 43 22 4 149 1 0 459 10 90 26 1 0 5 0 80 23 4 0 1 0 42 28 0 40 613 chain 3775 chr4 191154276 + 104655110 104655150 THE1A 353 + 313 353 210751 40 chain 17655 chr4 191154276 + 104655321 104655553 LOR1a 498 + 0 233 133826 43 1 2 188 chain 27500 chr4 191154276 + 104663904 104664228 L1PA7 6471 - 491 817 94650 278 0 2 46 chain 5054 chr4 191154276 + 104664228 104664290 L1PA7 6471 + 6075 6137 194591 62 chain 26198 chr4 191154276 + 104664315 104664622 L1PA7 6471 + 6162 6469 99212 307 chain 36179 chr4 191154276 + 104667711 104668129 L1PA3long 6157 + 5671 6092 74665 354 1 4 63 chain 5855 chr4 191154276 + 104668129 104668193 L1PA3long 6157 + 6093 6157 186645 64 chain 104967 chr4 191154276 + 104712055 104713564 HUERS-P3b-int 2065 + 18 1449 35505 76 3 0 114 4 5 70 0 3 9 4 0 18 0 2 4 77 0 18 1 2 4 1 0 238 3 0 160 0 1 19 5 4 9 1 0 54 1 0 26 2 1 261 0 1 103 0 1 157 0 5 6 5 4 56 chain 12057 chr4 191154276 + 104713583 104713720 L1PA7 6471 + 5484 5621 151956 137 chain 13716 chr4 191154276 + 104713721 104713898 L1PA7 6471 + 5621 5798 145551 11 1 0 102 0 1 63 chain 53849 chr4 191154276 + 104713898 104714565 L1PA7 6471 + 5799 6465 56455 480 0 1 28 5 6 145 3 0 6 chain 11392 chr4 191154276 + 104714739 104715023 L1PB2 3958 + 3555 3838 154735 62 1 0 14 16 20 30 13 12 48 10 8 12 55 54 23 chain 129108 chr4 191154276 + 104738130 104739521 L1PA2 6032 - 0 1391 28291 1391 chain 494007 chr4 191154276 + 104747612 104753227 L1PA4 6152 - 16 6151 7170 2468 4 1 253 1 0 1025 0 1 75 1 0 1077 2 0 381 0 1 233 7 532 88 chain 54496 chr4 191154276 + 104754228 104755084 L1PA11 4918 - 351 1188 56028 13 3 2 13 29 20 11 4 0 19 1 0 14 3 1 67 6 0 11 12 11 50 5 4 124 8 11 150 22 23 99 9 9 94 0 2 89 chain 28596 chr4 191154276 + 104755566 104755871 AluYa5 310 + 0 306 90754 16 0 1 289 chain 28990 chr4 191154276 + 104758607 104758917 AluYg6 310 + 1 310 89039 122 1 0 187 chain 18253 chr4 191154276 + 104761937 104762282 THE1D 372 + 0 344 132192 15 0 2 12 1 0 21 9 0 15 29 30 32 1 5 52 14 16 24 1 0 51 9 10 59 chain 294223 chr4 191154276 + 104767024 104772993 L1PA8 5853 + 2051 5853 13751 8 0 1 828 1 0 15 0 3 8 3 0 15 0 4 13 15 15 20 0 1 312 0 1 97 0 3 88 0 1 177 2190 0 243 12 6 1100 3 1 168 6 7 79 15 37 139 0 5 118 1 0 46 2 0 69 1 0 14 1 0 47 2 1 19 1 0 93 chain 19106 chr4 191154276 + 104768630 104769196 MER11A 1151 + 0 656 46757 55 0 99 76 1 0 64 4 0 134 15 16 94 0 1 4 7 1 112 chain 83881 chr4 191154276 + 104769225 104770287 MER11C 1089 - 26 1089 41956 173 0 1 150 12 3 34 1 0 10 0 4 133 8 9 160 1 0 59 6 10 65 0 1 29 0 1 221 chain 17621 chr4 191154276 + 104770287 104770809 MER11A 1151 + 656 1147 46757 28 5 6 120 0 26 26 43 0 22 18 0 36 0 1 53 13 14 147 0 1 11 chain 109957 chr4 191154276 + 104799067 104800414 L1PA7 6471 + 5116 6470 34228 80 1 0 285 0 1 41 0 4 86 1 3 90 1 2 106 0 1 465 1 2 4 1 0 172 1 0 12 chain 7142 chr4 191154276 + 104809288 104809414 THE1C 375 + 0 186 176461 29 0 2 32 16 76 6 4 0 34 0 2 5 chain 68427 chr4 191154276 + 104810716 104811495 L1PA4 6152 + 5372 6152 49074 524 1 2 254 chain 16936 chr4 191154276 + 104816182 104816453 L1PREC2 3366 - 502 768 135763 11 7 3 42 10 9 12 6 8 27 2 0 154 chain 7741 chr4 191154276 + 104837121 104837223 MER2 342 + 172 277 172652 7 0 3 95 chain 7073 chr4 191154276 + 104846876 104846960 L1PA5 6144 - 6 90 176928 84 chain 25479 chr4 191154276 + 104854558 104854867 AluY 311 + 2 311 102318 53 0 2 75 0 1 168 3 0 10 chain 30611 chr4 191154276 + 104858423 104858807 LTR12C 1709 + 773 1203 83187 64 1 0 235 0 47 84 chain 5365 chr4 191154276 + 104858842 104858906 LTR12C 1709 + 912 976 191373 64 chain 32962 chr4 191154276 + 104862424 104862863 LTR7 482 + 0 466 79268 100 21 15 150 0 31 8 0 1 138 0 1 22 chain 293623 chr4 191154276 + 104862882 104866542 HERVH-int 3825 + 0 3825 13790 281 0 2 50 1 0 31 2 3 108 8 10 47 50 48 20 0 150 29 2 1 158 0 1 231 10 14 908 0 5 194 12 13 926 0 1 177 20 21 331 0 1 64 chain 30458 chr4 191154276 + 104867754 104868186 LTR7 482 + 0 476 83517 39 1 7 54 21 15 85 1 11 53 1 32 86 0 2 59 0 1 32 chain 43765 chr4 191154276 + 104872069 104872579 MER9a1 513 - 0 513 64491 66 0 2 428 1 2 15 chain 118914 chr4 191154276 + 104896888 104898451 THE1A-int 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104989998 104991959 L1PA7 6471 - 2 2000 23232 503 0 2 243 0 3 97 1 3 58 3 5 247 0 3 175 12 38 143 1 0 13 0 1 377 2 1 86 chain 46290 chr4 191154276 + 104997776 104998333 L1PB1 5432 - 924 1480 61780 548 1 0 8 chain 39756 chr4 191154276 + 104998339 104998873 L1PB1 5432 + 4511 5061 69676 111 6 8 73 0 2 116 3 13 113 0 1 97 0 1 15 chain 80307 chr4 191154276 + 105005350 105006350 L1PA6 6164 + 4711 6135 43469 109 4 419 57 0 4 14 0 1 58 2 6 756 chain 314670 chr4 191154276 + 105055201 105058797 L1PA5 6144 - 124 3717 12821 1398 2 0 118 8 0 159 0 4 978 6 7 197 0 1 386 0 1 344 chain 9932 chr4 191154276 + 105058797 105058911 L1PA5 6144 + 6029 6143 160921 114 chain 42441 chr4 191154276 + 105063890 105065011 L1M1 2793 - 119 826 66088 46 1 0 105 1 0 28 0 3 40 7 10 5 1 0 14 9 13 100 0 2 8 4 0 12 6 10 75 0 1 6 2 1 81 3 0 9 16 13 21 17 19 13 419 0 72 chain 86673 chr4 191154276 + 105092123 105093151 LTR5A 1029 + 0 1029 40896 136 1 14 13 14 0 709 0 2 155 chain 5905 chr4 191154276 + 105093653 105093750 L1PREC2 3366 + 2679 2775 186146 38 7 8 27 2 0 23 chain 17169 chr4 191154276 + 105101126 105101436 THE1B 368 - 53 368 135109 7 1 0 53 75 80 6 1 0 55 0 1 64 0 1 48 chain 149681 chr4 191154276 + 105104381 105106039 L1PA3long 6157 + 4500 6157 24665 141 1 0 1516 chain 188120 chr4 191154276 + 105120906 105123289 L1P2 5180 - 1259 3661 20228 704 5 3 30 1 2 765 4 7 196 1 0 20 4 5 146 3 4 230 48 63 29 0 1 176 1 0 5 0 1 15 chain 174540 chr4 191154276 + 105123975 105126172 L1PA7 6471 + 4249 6469 21535 113 0 1 125 0 1 202 0 1 28 0 1 97 11 7 5 0 3 33 0 1 110 22 22 363 0 1 258 1 0 77 6 5 392 10 29 181 3 4 160 chain 7647 chr4 191154276 + 105137712 105137827 L1PA7 6471 + 5846 5953 173244 77 9 1 29 chain 39364 chr4 191154276 + 105137827 105138328 L1PA7 6471 + 5954 6459 70227 176 0 6 99 9 8 209 1 0 7 chain 11862 chr4 191154276 + 105155573 105155728 L1PA5 6144 + 5984 6144 152776 12 1 8 128 3 1 11 chain 26104 chr4 191154276 + 105166022 105166309 AluYb8 318 - 3 286 99604 165 1 0 24 3 0 94 chain 325354 chr4 191154276 + 105173752 105178248 L1P2 5180 + 647 5178 12375 92 22 1 5 0 1 41 0 15 238 4 5 4 1 0 46 53 54 168 29 28 92 20 20 256 0 2 132 0 5 186 42 54 91 0 1 22 0 2 113 2 0 120 0 1 252 8 9 250 0 1 302 0 4 204 12 15 67 0 1 150 0 1 92 3 0 7 6 10 40 0 1 211 0 4 229 0 2 213 0 1 133 1 0 29 13 14 364 0 1 37 2 1 14 0 1 34 1 0 38 1 0 4 chain 4851 chr4 191154276 + 105199267 105199348 MADE1 96 - 0 96 196771 28 1 0 8 7 23 37 chain 52388 chr4 191154276 + 105237387 105238216 L1PB1 5432 + 4625 5423 57365 63 2 1 73 3 0 36 2 0 305 3 0 8 5 6 21 1 0 9 1 0 11 14 13 48 1 0 17 1 0 45 1 0 15 1 0 4 2 0 8 9 0 19 5 2 17 2 0 24 1 0 4 17 19 11 1 0 19 chain 537922 chr4 191154276 + 105242641 105248785 L1PA4 6152 - 1 6149 3162 2558 0 1 83 0 1 727 0 2 85 0 11 225 0 2 1386 0 1 194 0 2 32 17 0 261 1 0 379 10 12 186 chain 12215 chr4 191154276 + 105276486 105276659 L1MA3 4352 + 928 1098 151361 99 2 0 50 5 4 17 chain 310747 chr4 191154276 + 105297304 105300830 L1PA5 6144 + 2596 6138 12973 580 1 0 212 0 1 1266 1 0 244 1 2 393 0 3 561 1 14 266 chain 34999 chr4 191154276 + 105303790 105304168 L1PA3long 6157 + 5777 6155 76191 378 chain 17657 chr4 191154276 + 105349610 105349910 THE1B 368 + 0 302 133821 105 4 5 21 31 22 16 1 0 33 1 0 12 0 4 6 11 19 59 chain 29626 chr4 191154276 + 105352511 105352883 THE1C 375 - 0 371 86132 26 1 0 345 chain 13414 chr4 191154276 + 105360466 105360613 L1PA3long 6157 - 1 148 146661 147 chain 167489 chr4 191154276 + 105360613 105362526 L1P1 4361 + 2432 4341 22335 1448 1 0 270 1 0 155 1 0 23 2 1 12 chain 5314 chr4 191154276 + 105373428 105373597 LTR48 738 - 551 738 191880 25 93 111 51 chain 158180 chr4 191154276 + 105435180 105436952 L1PA5 6144 - 3 1775 23562 1772 chain 16873 chr4 191154276 + 105436952 105437139 L1PA5 6144 + 4180 4367 135187 187 chain 97248 chr4 191154276 + 105439507 105440780 HSMAR1 1287 - 0 1285 37498 89 15 16 420 0 4 16 1 0 187 1 0 232 5 10 235 0 4 72 chain 56342 chr4 191154276 + 105443311 105443950 L1PA4 6152 - 4 643 54939 109 0 1 140 1 0 389 chain 193961 chr4 191154276 + 105461001 105463393 L1PA7 6471 - 1 2406 19680 662 0 3 171 9 10 307 0 1 135 0 1 201 1 0 4 0 1 25 1 0 229 0 6 42 7 11 28 0 1 53 0 1 4 1 0 298 5 2 209 chain 77695 chr4 191154276 + 105463648 105464591 L1P2 5180 + 1530 2468 44660 111 2 0 264 3 0 563 chain 485517 chr4 191154276 + 105483288 105489775 L1PA7 6471 - 1 6471 7538 12 2 1 207 0 1 462 4 0 163 0 3 41 37 0 1089 6 10 9 5 1 242 5 1 27 6 5 148 1 2 35 2 0 2 0 3 156 14 17 280 0 4 46 1 0 51 1 5 364 0 1 259 0 1 44 22 0 70 0 1 74 0 1 189 146 15 137 0 6 24 1 0 43 3 0 97 1 0 52 4 0 117 2 0 543 9 12 41 0 8 27 33 34 48 0 4 233 0 1 172 22 180 244 0 2 115 51 52 135 14 4 97 chain 45461 chr4 191154276 + 105494372 105494942 MLT2A2 560 - 4 560 62538 30 6 0 515 8 0 11 chain 87911 chr4 191154276 + 105502769 105504234 LTR12E 1234 + 0 1234 40408 22 9 0 28 19 41 62 213 2 42 0 1 88 0 1 71 1 2 287 1 0 23 41 0 170 9 20 211 0 1 37 20 13 15 12 13 84 chain 3889 chr4 191154276 + 105502910 105502956 LTR12E 1234 + 155 202 209044 42 0 1 4 chain 18660 chr4 191154276 + 105541492 105541828 THE1B 368 - 0 368 131051 39 14 23 10 1 0 53 35 45 25 2 1 115 17 32 25 chain 21101 chr4 191154276 + 105543402 105543738 THE1B 368 - 0 368 123552 49 0 9 11 1 0 56 40 50 26 1 0 102 6 21 44 chain 26088 chr4 191154276 + 105583635 105583933 L1PA5 6144 + 5844 6143 99675 152 0 1 146 chain 20307 chr4 191154276 + 105590058 105590437 THE1B 368 - 2 368 126218 53 51 10 12 0 6 42 29 42 5 3 0 14 1 0 14 2 0 108 1 16 44 chain 7394 chr4 191154276 + 105595407 105595501 L1PA16 3655 - 117 211 174809 94 chain 541911 chr4 191154276 + 105608181 105614058 L1PA2 6032 - 140 6032 2525 1205 0 1 4542 0 14 130 chain 26921 chr4 191154276 + 105621513 105621800 AluYa5 310 + 23 310 96553 287 chain 28861 chr4 191154276 + 105623526 105623831 AluYa5 310 - 5 310 89614 305 chain 502454 chr4 191154276 + 105627718 105634094 L1PA7 6471 + 3 6449 6702 49 6 5 96 19 19 8 0 1 13 4 4 34 5 1 11 0 15 153 9 3 383 0 1 386 0 2 169 1 0 487 6 5 223 12 2 53 4 6 86 3 0 414 3 0 783 0 1 89 0 4 20 17 9 261 0 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310 0 76 8 0 246 0 1 48 1 0 46 2 0 130 2 1 12 9 8 92 chain 11081 chr4 191154276 + 105739429 105739577 L1PA8 5853 - 0 146 155886 93 1 0 19 2 1 33 chain 11398 chr4 191154276 + 105741061 105741192 L1PA4 6152 - 2117 2248 154013 131 chain 188308 chr4 191154276 + 105741192 105743298 L1PA4 6152 + 4038 6151 20210 88 3 11 106 2 1 1907 chain 125802 chr4 191154276 + 105761855 105763425 THE1A-int 1579 - 5 1579 29154 23 0 3 617 0 1 930 chain 30376 chr4 191154276 + 105784612 105784928 AluYb8 318 + 0 316 83717 316 chain 29496 chr4 191154276 + 105803789 105804099 AluYb8 318 - 0 310 86649 310 chain 11795 chr4 191154276 + 105845753 105845937 MER30 238 - 1 202 153066 28 17 14 64 1 21 74 chain 511200 chr4 191154276 + 105851419 105857686 L1PA7 6471 + 0 6459 6049 402 2 4 701 0 1 105 0 4 139 2 0 1135 0 6 74 0 19 41 0 1 77 0 75 19 8 8 289 0 4 57 0 1 387 6 10 47 0 1 396 5 0 372 0 34 46 3 4 156 0 1 82 1 2 284 1 2 286 1 41 304 1 4 38 7 4 338 0 2 305 10 9 4 0 1 58 0 1 78 chain 125085 chr4 191154276 + 105881487 105883062 L1P2 5180 - 3572 5178 29365 682 0 4 129 1 0 6 1 0 117 1 2 153 1 0 7 1 0 10 9 41 210 1 0 97 1 0 148 chain 15554 chr4 191154276 + 105905864 105906096 THE1D 372 - 2 236 139718 119 3 0 5 5 8 45 7 9 48 chain 137542 chr4 191154276 + 105914948 105916964 L1PB1 5432 - 10 1974 26553 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 7 2 0 17 16 6 6 2 0 16 1 0 21 8 9 12 20 18 52 2 0 9 5 1 11 2 1 8 1 0 25 3 0 7 15 17 250 0 1 124 1 0 35 0 1 50 4 0 107 8 17 100 33 0 129 0 4 163 1 0 139 6 7 225 22 23 137 0 1 83 0 1 5 1 0 29 chain 12360 chr4 191154276 + 105917126 105917278 L1PA8 5853 - 0 150 150798 93 1 0 19 2 1 37 chain 381695 chr4 191154276 + 105937441 105942223 L1PA6 6164 + 1706 6159 10710 619 0 1 905 7 11 280 0 1 54 0 1 385 1 0 1060 0 7 233 0 1 32 1 5 13 3 7 136 2 0 36 320 0 340 29 0 326 chain 8411 chr4 191154276 + 105945421 105945525 L1MA1 4479 + 278 382 168785 104 chain 14355 chr4 191154276 + 105950821 105951009 L1PA7 6471 + 2290 2474 143356 38 5 1 145 chain 314663 chr4 191154276 + 105951016 105954945 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88678 chr4 191154276 + 106031449 106032408 SVA_E 1901 + 938 1899 40118 322 2 1 385 0 3 250 chain 21155 chr4 191154276 + 106065836 106066079 AluSx4 309 + 1 266 123358 41 0 22 202 chain 22968 chr4 191154276 + 106080902 106081173 AluSc 308 + 12 293 115761 47 0 10 224 chain 104900 chr4 191154276 + 106089767 106091300 L1PB1 5432 - 12 1521 35527 16 1 0 12 2 1 21 1 0 24 2 0 13 11 8 28 14 1 16 1 0 43 1 0 16 2 1 53 2 0 9 6 2 10 1 0 8 1 0 24 3 0 9 1 2 83 4 6 30 0 1 168 2 10 11 11 7 15 7 10 141 4 0 135 1 0 4 0 1 266 9 6 71 4 6 68 0 5 148 chain 19314 chr4 191154276 + 106100008 106100366 THE1D 372 - 10 372 129200 107 1 0 12 43 65 92 47 30 56 chain 124464 chr4 191154276 + 106142873 106144255 L1PA3long 6157 - 0 1382 29554 1382 chain 25043 chr4 191154276 + 106165743 106166046 AluSp 311 - 3 311 104579 249 1 2 24 1 5 28 chain 51945 chr4 191154276 + 106207584 106208308 L1PA8 5853 + 5119 5853 57651 159 0 2 61 15 23 200 1 0 46 2 0 68 23 28 34 22 20 93 chain 15147 chr4 191154276 + 106214306 106214472 L1PA3long 6157 + 5987 6153 140928 166 chain 508124 chr4 191154276 + 106217804 106224357 L1PA7 6471 + 0 6460 6310 272 7 6 4 0 1 117 5 6 271 5 6 135 18 2 196 1 0 140 0 1 53 0 4 20 0 6 16 90 0 25 1 2 5 1 0 61 9 1 279 0 2 225 0 1 6 1 0 772 8 0 250 1 5 103 21 19 71 7 5 71 1 11 332 9 0 27 1 0 617 0 1 17 0 1 32 0 1 71 2 0 198 3 5 5 2 0 23 5 0 303 0 2 150 2 1 93 3 5 129 1 2 151 0 1 264 1 5 13 1 0 348 1 0 43 0 2 149 0 1 42 1 3 64 6 7 73 0 7 8 2 0 66 0 1 27 chain 492494 chr4 191154276 + 106228393 106234538 L1PA2 6032 - 0 6022 7245 2540 0 1 104 1 0 326 6 0 486 8 11 841 0 4 461 0 1 5 1 0 117 74 75 78 39 36 168 139 11 60 1 8 124 0 1 318 1 0 89 15 14 27 6 5 4 0 1 106 chain 204499 chr4 191154276 + 106235365 106237981 L1PA8 5853 + 3154 5756 18888 67 1 0 545 1 0 4 0 1 122 5 0 14 6 8 76 0 2 37 6 0 163 5 11 536 19 1 246 0 4 6 3 0 9 0 1 52 5 7 103 0 3 178 0 2 42 0 4 133 0 4 29 1 0 44 2 0 71 1 0 14 6 0 47 2 1 15 chain 183047 chr4 191154276 + 106242546 106244577 L1PA3long 6157 + 4120 6157 20678 190 0 1 48 0 4 1317 0 1 476 chain 89242 chr4 191154276 + 106244617 106245646 L1PA5 6144 + 5110 6144 39912 184 1 0 460 0 1 39 0 5 345 chain 186680 chr4 191154276 + 106251041 106253107 L1PA4 6152 + 4077 6143 20364 2066 chain 5140 chr4 191154276 + 106267627 106267767 L1MA5A 2387 + 2260 2376 193671 36 1 0 6 39 19 19 1 0 19 7 5 12 chain 55565 chr4 191154276 + 106280221 106280933 LTR12 884 + 0 869 55374 15 0 1 14 1 2 177 0 156 12 2 0 85 3 5 211 1 0 191 chain 104622 chr4 191154276 + 106286558 106288027 THE1C-int 1605 + 17 1552 35590 74 0 2 17 0 54 281 0 7 48 3 7 46 0 1 104 83 85 38 6 7 313 20 19 33 5 2 44 2 1 352 chain 100315 chr4 191154276 + 106311111 106312502 L1PA8 5853 + 4477 5853 36689 36 0 11 164 5 4 180 0 1 136 0 3 70 0 2 68 8 11 10 34 1 22 3 0 6 0 3 359 1 0 44 2 0 70 11 13 9 0 2 26 14 13 19 1 0 93 chain 4040 chr4 191154276 + 106317884 106317941 MER58A 224 + 168 224 206788 41 1 0 15 chain 7726 chr4 191154276 + 106328159 106328246 U6 107 + 17 104 172738 87 chain 371989 chr4 191154276 + 106330088 106334624 L1PA6 6164 + 0 6153 11025 195 0 1 75 0 1 138 0 1 4 1 0 99 0 9 380 0 4 54 1 0 292 9 10 411 11 11 589 3 4 14 0 1 12 0 4 24 7 8 24 3 1 158 1 1475 650 2 0 296 0 107 260 0 4 401 2 4 109 0 2 88 1 11 222 chain 21554 chr4 191154276 + 106340328 106340577 L1PA4 6152 - 13 262 121949 249 chain 175414 chr4 191154276 + 106347372 106349736 L1P2 5180 + 2 2368 21406 141 26 25 26 1 0 50 16 15 4 1 0 128 74 55 54 0 1 62 1 0 77 12 11 94 1 0 18 0 13 7 0 15 226 0 1 61 0 1 358 0 1 873 4 0 49 chain 19475 chr4 191154276 + 106349744 106349984 L1PA7 6471 + 6227 6469 128729 80 1 2 142 0 1 17 chain 16339 chr4 191154276 + 106353767 106353988 MER30 238 + 0 238 137371 19 2 0 85 9 28 106 chain 22327 chr4 191154276 + 106360849 106361130 L1PA4 6152 - 6 288 118789 12 1 0 181 12 14 75 chain 12276 chr4 191154276 + 106368059 106368270 L1MA7 2200 + 78 283 151089 5 2 0 39 32 29 48 1 0 84 chain 29339 chr4 191154276 + 106370093 106370398 AluYa8 305 + 0 305 87355 305 chain 4524 chr4 191154276 + 106379405 106379568 L1MD3 1191 + 1015 1159 200498 45 45 38 22 34 23 7 1 0 9 chain 117597 chr4 191154276 + 106384154 106385704 THE1B-int 1605 + 0 1600 31928 269 3 4 89 3 0 63 0 42 221 19 23 177 0 1 18 1 4 237 0 1 114 2 0 21 0 1 91 3 4 106 0 7 3 7 0 58 0 1 45 chain 18231 chr4 191154276 + 106385709 106386040 THE1B 368 + 0 368 132257 44 0 15 18 6 5 34 21 30 17 10 9 26 30 45 125 chain 22668 chr4 191154276 + 106405441 106405773 L1PA7 6471 + 5518 5808 117229 146 45 0 36 1 3 27 0 1 77 chain 57774 chr4 191154276 + 106407553 106408214 L1PA7 6471 + 5794 6455 54098 661 chain 87995 chr4 191154276 + 106408945 106409986 HERV17-int 4347 + 3293 4347 40373 167 0 1 51 1 0 114 8 8 53 0 1 166 0 11 146 10 11 325 chain 4842 chr4 191154276 + 106410299 106410357 LTR17 781 + 0 59 196861 25 0 1 33 chain 11416 chr4 191154276 + 106410421 106410561 LTR17 781 - 457 598 154614 136 0 1 4 chain 120834 chr4 191154276 + 106413763 106415478 L1PA11 4918 - 289 1962 30749 18 47 33 11 2 0 13 1 0 15 31 22 9 4 0 20 1 0 16 2 0 66 3 0 11 1 0 60 8 4 136 0 1 108 0 1 19 8 1 141 0 1 494 0 2 230 0 1 240 chain 93879 chr4 191154276 + 106419978 106422360 SVA_A 1864 - 0 1839 38391 184 1224 0 133 0 1 80 0 3 136 40 196 38 7 4 29 0 524 511 chain 46640 chr4 191154276 + 106420223 106420729 L1PA2 6032 - 0 506 61503 506 chain 61193 chr4 191154276 + 106420729 106421386 L1PA2 6032 + 4895 5552 52254 657 chain 354960 chr4 191154276 + 106432410 106437278 L1PB1 5432 - 2 4745 11478 8 2 0 18 1 0 13 1 0 21 1 0 10 2 7 7 2 0 15 7 4 19 25 12 14 6 5 40 1 0 16 2 1 53 2 0 8 17 12 33 65 11 213 0 31 238 32 29 370 0 2 274 0 3 220 0 2 119 1 0 4 0 1 33 5 26 362 34 0 282 0 3 47 3 4 293 0 1 31 0 1 21 3 0 46 0 1 14 0 5 449 1 0 127 104 14 13 13 0 81 1 2 127 1 0 6 0 12 15 0 1 38 1 0 26 0 1 39 6 5 71 0 3 42 1 16 415 1 2 147 1 0 88 chain 26782 chr4 191154276 + 106458028 106458435 MSTA 426 + 0 414 97037 106 30 30 15 1 2 48 8 9 150 0 5 49 chain 5079 chr4 191154276 + 106466669 106466742 MLT2A1 477 - 0 64 194308 54 9 0 10 chain 35860 chr4 191154276 + 106488937 106489338 L1PA2 6032 - 0 400 75051 151 1 0 249 chain 32583 chr4 191154276 + 106489338 106489686 L1PA2 6032 + 5210 5558 79886 348 chain 21510 chr4 191154276 + 106491546 106491932 THE1C 375 - 0 375 122107 25 1 0 128 0 3 6 31 28 22 31 36 7 3 0 11 18 6 103 chain 3803 chr4 191154276 + 106496024 106496091 L1PB3 3668 - 116 179 210342 23 3 1 25 1 0 8 1 0 6 chain 10377 chr4 191154276 + 106516860 106517008 MER2 342 - 105 259 158797 124 7 13 17 chain 42184 chr4 191154276 + 106530968 106531475 L1PA8A 6298 + 5784 6291 66418 507 chain 3188 chr4 191154276 + 106599886 106599925 MER4B 649 + 0 39 221161 39 chain 6348 chr4 191154276 + 106602806 106602932 MER85 139 + 0 139 182395 27 16 17 32 3 4 16 3 14 29 chain 4767 chr4 191154276 + 106618859 106618921 MER63C 923 + 405 467 197737 62 chain 3673 chr4 191154276 + 106640817 106640922 MIR 256 + 124 231 212325 31 49 51 25 chain 527596 chr4 191154276 + 106650917 106656981 L1PA5 6144 - 15 6144 4438 243 1 2 516 0 1 388 0 1 90 0 11 529 0 4 158 0 35 474 0 2 360 0 1 407 0 1 126 0 2 403 0 1 231 1 2 939 0 7 498 1 0 85 0 3 32 14 17 493 1 0 4 7 0 63 chain 3126 chr4 191154276 + 106685583 106685807 MLT1B 390 - 16 242 222420 33 172 174 19 chain 21777 chr4 191154276 + 106686805 106687125 THE1C 375 + 13 332 121109 34 10 7 59 0 1 66 25 26 126 chain 521281 chr4 191154276 + 106691531 106697953 L1PA7 6471 - 1 6471 5030 456 0 1 310 1 0 75 0 3 670 1 0 180 0 3 94 0 4 45 14 18 32 0 1 7 9 8 75 1 0 77 5 10 766 0 1 137 2 0 397 0 4 305 1 0 108 0 1 47 0 3 109 5 7 50 0 1 535 22 18 223 0 3 106 0 1 72 18 22 70 0 3 102 1 2 386 1 4 115 0 2 201 9 16 180 0 1 151 15 0 8 1 16 75 6 7 146 chain 4602 chr4 191154276 + 106715352 106715525 L1MC1 2226 + 2000 2149 199592 47 47 35 15 43 32 6 1 0 14 chain 16891 chr4 191154276 + 106732654 106732845 L1PA3long 6157 + 5963 6157 135862 179 0 3 12 chain 24959 chr4 191154276 + 106750539 106750901 THE1B 368 - 0 368 105011 56 1 2 4 1 0 64 1 0 10 1 0 18 1 5 9 5 10 21 1 0 169 chain 512251 chr4 191154276 + 106773287 106780019 L1PA7 6471 - 8 6467 5946 5 0 2 41 0 4 134 1 2 173 8 9 190 8 15 186 1 0 88 1 0 381 0 3 558 0 4 89 0 1 4 1 0 87 0 5 230 0 2 332 0 1 394 1 0 660 36 0 16 1 3 49 2 1 125 0 1 27 1 0 176 321 0 87 6 8 43 0 1 105 0 5 378 0 1 69 0 1 383 0 30 145 4 15 95 0 1 695 2 0 152 0 1 38 0 4 107 2 3 94 chain 532922 chr4 191154276 + 106781287 106787397 L1PA4 6152 + 10 6143 3862 739 0 4 687 1 0 800 0 1 548 0 2 361 1 5 534 0 2 655 0 4 718 0 2 221 0 1 21 1 0 165 0 4 554 0 1 104 chain 509980 chr4 191154276 + 106801338 106807353 L1PA5 6144 + 0 6142 6167 135 0 14 263 19 19 378 17 0 9 0 17 193 13 14 127 9 0 671 0 5 348 0 4 116 2 1 592 0 1 1428 0 8 752 0 129 65 21 0 846 4 0 7 chain 19027 chr4 191154276 + 106850121 106850381 L1PA8 5853 - 0 271 130042 90 1 0 22 2 1 56 0 15 61 2 0 26 chain 79282 chr4 191154276 + 106867597 106868656 MER11A 1151 - 0 1151 43920 183 0 1 49 0 1 58 39 22 105 0 1 31 15 18 110 1 2 70 0 1 110 0 1 60 0 2 32 1 0 116 0 99 79 chain 6759 chr4 191154276 + 106901521 106901599 L1PA5 6144 - 12 90 179253 78 chain 386670 chr4 191154276 + 106901599 106906274 L1P2 5180 - 403 5178 10559 1091 0 3 494 1 0 17 1 2 184 6 13 364 7 0 303 0 1 108 0 1 344 0 5 401 1 0 480 0 1 7 0 25 86 0 1 54 1 0 5 1 0 272 1 0 7 1 0 261 1 0 47 0 59 9 10 20 110 chain 177406 chr4 191154276 + 106906326 106908271 L1PA2 6032 - 0 1943 21215 141 5 0 710 0 2 159 0 1 930 chain 219232 chr4 191154276 + 106928682 106931923 L1PB1 5432 - 8 3215 17932 6 1 0 14 1 0 12 1 0 12 8 7 24 49 35 17 4 1 16 1 0 42 8 7 10 2 1 50 38 30 25 13 0 8 24 12 98 4 6 150 8 16 27 2 1 171 2 1 6 2 0 395 0 1 18 7 8 12 1 0 200 0 1 7 13 15 40 0 1 41 0 1 147 4 6 111 0 1 4 1 0 632 0 9 74 6 7 46 1 0 243 3 6 35 23 27 37 8 0 128 5 6 143 chain 29541 chr4 191154276 + 106933780 106934090 AluYa5 310 - 0 310 86457 310 chain 105120 chr4 191154276 + 106946163 106947527 L1PB1 5432 - 332 1697 35471 255 0 1 31 0 1 190 0 1 169 0 4 96 0 1 37 1 2 109 1 0 204 15 7 96 0 1 160 chain 2920 chr4 191154276 + 106951599 106951630 L1PB1 5432 - 3304 3335 226683 31 chain 508950 chr4 191154276 + 106989315 106995402 L1PA6 6164 - 4 6164 6248 281 0 3 319 0 3 127 0 2 785 0 1 265 1 5 672 1 0 3 1 0 380 1 47 88 0 1 671 0 1 170 3 4 98 1 3 491 0 1 4 2 1 824 0 4 242 7 10 119 0 1 23 1 0 244 9 10 106 10 13 138 chain 3455 chr4 191154276 + 107003775 107003816 MSTB 430 - 29 70 216084 41 chain 449180 chr4 191154276 + 107003915 107010194 L1PA8A 6298 + 34 6290 8786 6 1 0 18 32 21 20 3 0 11 7 5 8 1 0 5 10 7 13 1 0 9 4 3 10 2 0 7 1 0 8 6 4 15 30 26 5 1 0 8 1 0 14 4 0 9 1 0 30 14 13 19 12 6 73 2 0 15 1 0 7 15 13 139 0 1 100 8 4 342 0 4 67 10 17 26 1 0 100 1 0 4 0 1 44 5 9 506 0 1 21 3 0 201 0 5 154 25 14 225 23 25 48 36 14 110 0 2 129 0 4 21 0 3 66 5 10 50 2 1 59 0 4 137 0 3 81 0 1 127 1 6 44 0 3 15 1 2 26 7 11 15 0 2 34 0 1 393 1 2 698 15 16 43 0 1 253 1 0 77 31 15 167 20 15 94 1 2 138 0 1 93 2 1 34 2 0 44 0 2 33 0 5 104 3 5 90 1 0 34 0 1 62 0 29 32 24 13 187 26 32 7 5 0 86 chain 119012 chr4 191154276 + 107012544 107014112 LTR12C 1709 - 0 1709 31403 84 14 13 384 44 13 59 0 47 272 1 0 35 0 119 212 9 7 163 0 9 31 0 1 260 chain 5187 chr4 191154276 + 107014124 107014185 MSTB 430 - 365 426 193169 61 chain 242787 chr4 191154276 + 107032213 107035345 HERVK22-int 3844 + 4 3844 16623 605 1 0 4 3 4 67 2 1 339 0 14 193 0 1 725 2 1 67 16 20 132 0 1 467 17 26 34 0 1 54 19 47 187 15 668 87 2 1 94 chain 460031 chr4 191154276 + 107041111 107046171 L1PA2 6032 + 2 6032 8397 1144 0 943 2136 0 4 413 1 23 513 0 1 853 chain 5377 chr4 191154276 + 107066801 107066865 L1P 111 - 44 107 191226 46 1 0 17 chain 87713 chr4 191154276 + 107068575 107069623 MER11C 1089 + 0 1059 40481 250 0 1 62 0 4 371 0 4 45 0 1 127 0 1 193 chain 188595 chr4 191154276 + 107101547 107103814 L1PA7 6471 - 4 2288 20185 151 0 1 7 0 1 96 15 16 57 0 1 241 0 12 122 0 2 135 6 5 522 0 1 910 1 0 4 chain 29878 chr4 191154276 + 107125908 107126221 AluYb8 318 - 5 318 85176 313 chain 543009 chr4 191154276 + 107134511 107140537 L1PA3long 6157 + 1 6157 2341 7 3 0 144 0 1 211 0 1 411 0 128 258 0 3 4992 chain 23633 chr4 191154276 + 107141271 107141610 THE1A 353 + 4 341 112404 77 7 8 17 15 14 177 1 0 4 5 4 36 chain 34014 chr4 191154276 + 107163874 107164248 L1PA3long 6157 - 2 377 77599 140 0 1 234 chain 77336 chr4 191154276 + 107213742 107214756 Charlie3 2679 + 1617 2674 44812 86 0 1 38 0 1 151 0 3 157 0 1 64 0 1 78 0 41 73 7 4 272 11 0 9 11 20 57 chain 41640 chr4 191154276 + 107226745 107227288 MER41A 554 + 0 554 67105 255 0 11 225 0 3 6 4 1 21 1 0 16 0 1 15 chain 125745 chr4 191154276 + 107241931 107243452 SVA_B 1603 + 49 1598 29174 764 10 43 13 0 42 24 0 41 336 90 0 127 0 2 157 chain 4739 chr4 191154276 + 107300042 107300199 L1MB7 1623 + 518 674 198029 21 83 75 6 0 7 47 chain 3376 chr4 191154276 + 107306734 107306904 MER52D 1964 - 823 869 217560 30 124 0 16 chain 531248 chr4 191154276 + 107323637 107329750 L1PA4 6152 - 9 6151 4050 408 0 1 732 0 15 251 1 0 189 0 6 602 0 1 331 0 1 440 3 4 1430 0 4 58 0 1 1668 chain 57265 chr4 191154276 + 107330551 107331247 LTR30 714 + 0 714 54358 449 11 12 33 0 17 203 chain 19152 chr4 191154276 + 107366899 107367247 THE1D 372 - 0 372 129677 59 0 2 54 68 91 20 0 1 66 11 12 16 3 0 51 chain 507364 chr4 191154276 + 107386732 107393196 L1PA7 6471 - 8 6471 6376 23 4 5 297 0 2 335 0 4 172 0 3 902 0 2 77 0 1 325 1 4 475 1 0 225 1 2 56 0 4 44 3 4 12 14 15 76 3 1 6 0 1 146 19 19 125 0 4 457 26 0 312 0 3 540 0 1 217 2 0 161 3 2 130 5 24 433 3 4 30 6 4 177 18 19 5 3 0 104 1 0 59 2 1 8 6 0 129 65 73 32 17 0 171 chain 9526 chr4 191154276 + 107401461 107401577 MER2 342 + 144 260 162950 116 chain 290256 chr4 191154276 + 107409287 107412592 L1PA5 6144 + 2820 6132 14005 268 0 1 167 0 4 35 5 6 1543 0 1 131 1 0 268 0 1 747 6 6 134 chain 28358 chr4 191154276 + 107419799 107420096 AluYa5 310 - 13 310 91738 297 chain 18928 chr4 191154276 + 107426037 107426357 THE1D 372 + 41 357 130297 15 42 36 92 7 9 32 1 0 86 5 6 40 chain 23558 chr4 191154276 + 107437551 107438123 L1PREC2 3366 - 419 816 112811 25 2 0 11 229 57 4 1 0 43 2 1 54 2 0 39 1 0 93 2 5 4 0 1 60 chain 24165 chr4 191154276 + 107442392 107442652 AluYb8 318 - 1 261 109403 260 chain 31437 chr4 191154276 + 107445215 107445636 MLT2A2 560 + 0 442 81753 50 8 9 91 0 1 151 0 8 89 3 14 29 chain 115612 chr4 191154276 + 107445644 107447064 LTR12C 1709 - 0 1709 32584 169 2 1 130 0 4 62 0 1 59 0 1 54 0 4 77 0 2 27 3 1 5 1 0 117 2 282 134 6 5 172 1 0 4 0 1 96 0 1 39 0 1 260 chain 530927 chr4 191154276 + 107456277 107462403 L1PA5 6144 - 5 6141 4087 840 1 5 1252 0 1 41 0 4 793 1 2 880 20 16 455 0 2 653 0 1 304 4 5 882 chain 530250 chr4 191154276 + 107479260 107485389 L1PA4 6152 - 13 6146 4159 1017 11 12 1136 1 0 1148 1 0 404 0 2 55 0 1 1623 0 1 8 1 2 724 chain 561442 chr4 191154276 + 107492214 107498227 L1HS 6032 - 16 6029 305 6013 chain 3373 chr4 191154276 + 107525260 107525312 MER52A 1651 - 716 760 217632 17 8 0 27 chain 2804 chr4 191154276 + 107531913 107532023 MER52C 1267 + 941 1052 228685 30 65 66 15 chain 29218 chr4 191154276 + 107534139 107534448 AluYa5 310 + 1 310 87969 309 chain 14377 chr4 191154276 + 107544878 107545041 L1PA3long 6157 + 5993 6156 143279 163 chain 15451 chr4 191154276 + 107548569 107548902 L1PB1 5432 - 10 311 140051 8 1 0 10 1 0 13 1 0 21 1 0 24 2 0 11 12 9 18 24 12 16 1 0 42 9 8 9 2 1 52 2 0 9 6 2 11 1 0 8 1 0 17 chain 17988 chr4 191154276 + 107558274 107558494 MSTA-int 1630 + 1403 1623 132893 220 chain 161106 chr4 191154276 + 107559379 107561110 L1PA2 6032 - 1499 3230 23173 1731 chain 136850 chr4 191154276 + 107561110 107562595 L1PA2 6032 + 4543 6028 26561 1485 chain 4627 chr4 191154276 + 107574936 107574995 L1PB 1623 - 1448 1506 199329 4 1 0 54 chain 7947 chr4 191154276 + 107590665 107590757 L1P4 1494 - 1138 1230 171341 92 chain 291756 chr4 191154276 + 107593776 107597151 L1PA5 6144 + 2731 6122 13919 41 0 1 1211 0 3 293 0 2 63 0 8 686 0 1 254 1 0 7 1 2 417 0 1 260 16 16 125 chain 9226 chr4 191154276 + 107602402 107602519 LTR12C 1709 - 623 781 164421 39 0 41 78 chain 34656 chr4 191154276 + 107604989 107605419 MER57A1 433 + 2 433 76681 277 4 5 149 chain 98691 chr4 191154276 + 107606035 107607163 L1PA4 6152 - 1 1124 37102 163 15 9 606 0 1 344 chain 28491 chr4 191154276 + 107607163 107607515 MLT2A2 560 - 207 560 91225 173 0 1 179 chain 195154 chr4 191154276 + 107622581 107624928 L1PA7 6471 + 4111 6466 19571 514 0 1 35 0 1 8 0 6 271 3 0 5 0 3 249 5 1 416 0 3 415 0 1 62 1 0 193 5 7 112 1 0 4 0 1 39 1 0 8 chain 299626 chr4 191154276 + 107631540 107635001 L1PA5 6144 - 0 3468 13446 259 1 0 442 0 1 64 0 1 7 5 3 1295 0 1 165 0 1 87 0 4 134 1 2 476 0 1 525 chain 82412 chr4 191154276 + 107635001 107635960 L1PA5 6144 + 1712 2671 42539 239 0 1 74 2 0 323 0 1 321 chain 175288 chr4 191154276 + 107642094 107644038 L1PA3long 6157 - 0 1972 21422 5 3 0 141 0 26 624 0 3 57 0 1 257 4 5 853 chain 99828 chr4 191154276 + 107662183 107663417 L1PA7 6471 - 3 1231 36821 11 2 0 5 0 1 133 21 20 337 1 2 338 1 0 71 6 1 251 0 1 57 chain 44341 chr4 191154276 + 107691707 107692478 L1MA2 4263 + 3289 4058 63769 12 1 0 103 1 0 30 29 22 72 0 10 28 1 0 6 51 52 37 2 1 127 27 25 142 11 9 24 19 21 48 chain 53681 chr4 191154276 + 107703217 107704467 L1MA1 4479 + 3178 4105 56556 68 6 5 12 19 13 42 0 3 43 0 2 22 2 0 6 1 0 115 12 13 158 2 7 11 315 3 13 1 0 25 2 0 13 0 1 5 10 8 35 0 1 24 1 0 20 2 0 13 1 0 8 13 15 41 1 0 19 23 19 39 14 13 65 1 0 27 chain 12538 chr4 191154276 + 107706813 107706962 L1PA7 6471 - 1 146 150085 6 4 0 139 chain 7658 chr4 191154276 + 107722190 107722282 MER85 139 + 4 96 173170 92 chain 18429 chr4 191154276 + 107752937 107753193 L1PA16 3655 + 3297 3549 131695 94 9 0 101 1 6 51 chain 7976 chr4 191154276 + 107761400 107761500 MLT1A0 366 + 256 356 171196 100 chain 3626 chr4 191154276 + 107778278 107778318 L1MC2 1988 - 145 185 213214 40 chain 32809 chr4 191154276 + 107786127 107786582 L1PA8 5853 - 0 449 79517 93 1 0 21 12 11 25 26 25 70 2 0 44 1 0 160 chain 373026 chr4 191154276 + 107791932 107796863 L1PA6 6164 - 3 5635 10995 9 3 0 133 0 1 6 3 4 57 0 1 324 326 0 130 0 4 82 1 4 459 0 1 139 43 4 636 0 1030 418 0 5 389 12 8 1005 0 11 345 1 0 109 0 1 42 0 17 216 5 4 38 chain 69298 chr4 191154276 + 107803770 107804646 L1PA7 6471 - 2166 3047 48684 44 17 18 293 0 1 29 0 1 195 0 1 116 0 1 182 chain 164025 chr4 191154276 + 107804650 107806669 L1PA7 6471 + 4327 6461 22806 541 0 17 239 1 0 8 5 10 43 0 89 328 0 4 8 1 0 245 0 3 418 9 8 173 chain 5309 chr4 191154276 + 107814859 107814924 L1P4b 1366 + 909 975 191921 24 0 1 41 chain 6492 chr4 191154276 + 107821317 107821394 L1PA4 6152 - 3288 3365 181315 77 chain 284805 chr4 191154276 + 107821394 107824647 L1PA4 6152 + 2873 6140 14365 310 1 0 415 0 7 332 0 3 1364 1 5 75 1 0 585 17 18 51 0 1 101 chain 544527 chr4 191154276 + 107856260 107862276 L1PA2 6032 + 1 6030 2138 71 0 1 182 2 1 2506 1 0 685 0 8 771 0 4 948 0 1 596 0 1 88 5 0 10 0 5 151 chain 158939 chr4 191154276 + 107877325 107879066 L1PA3long 6157 + 4410 6153 23472 84 0 2 1657 chain 44245 chr4 191154276 + 107886753 107887231 L1PA2 6032 - 2 480 63887 478 chain 514452 chr4 191154276 + 107893910 107900182 L1PA7 6471 - 13 6278 5730 443 7 10 303 1 3 350 1 0 108 0 1 75 8 2 200 0 1 7 1 0 1193 0 1 14 0 1 74 0 1 626 12 12 170 0 1 229 0 2 301 1 2 9 1 0 54 1 0 29 0 1 635 0 3 45 0 1 132 0 1 868 6 7 132 1 0 5 17 0 213 chain 24207 chr4 191154276 + 107926225 107926524 AluY 311 + 8 309 109171 100 0 1 23 0 1 176 chain 7920 chr4 191154276 + 107973254 107973345 L1PA5 6144 + 6043 6135 171524 79 0 1 12 chain 28264 chr4 191154276 + 107978952 107979304 THE1A 353 - 0 353 92063 170 0 1 7 0 1 64 1 0 110 chain 17435 chr4 191154276 + 107994822 107995046 LTR12C 1709 + 932 1203 134426 136 3 50 85 chain 5860 chr4 191154276 + 107995046 107995165 LTR12C 1709 + 877 996 135865 119 chain 100685 chr4 191154276 + 107996436 107997605 L1PA7 6471 + 5299 6467 36586 1136 0 1 23 2 0 8 chain 214990 chr4 191154276 + 108003798 108006142 L1PA3long 6157 + 3808 6152 18165 2344 chain 21276 chr4 191154276 + 108013784 108015472 L1P4a 3072 - 1955 3038 122940 85 9 12 62 1265 656 26 1 0 24 14 5 32 29 35 10 0 9 37 5 4 54 2 0 17 1 0 15 chain 28151 chr4 191154276 + 108037659 108038029 THE1B 368 + 0 368 92458 172 1 0 20 2 0 25 3 4 147 chain 3675 chr4 191154276 + 108097204 108097243 MLT2F 649 + 587 626 212310 39 chain 23744 chr4 191154276 + 108121699 108122083 THE1A 353 + 0 333 111812 84 56 8 18 1 0 92 1 0 7 14 13 111 chain 363667 chr4 191154276 + 108127829 108131714 L1HS 6032 - 0 3889 11271 45 0 1 663 0 3 3177 chain 42222 chr4 191154276 + 108144780 108145250 L1PA3long 6157 - 1 471 66374 470 chain 22559 chr4 191154276 + 108156888 108157162 AluSc 308 + 0 282 117766 64 0 8 210 chain 44002 chr4 191154276 + 108160325 108160883 MLT2A2 560 - 0 560 64206 197 5 6 226 0 1 130 chain 35174 chr4 191154276 + 108170798 108171213 L1PA8 5853 - 258 674 75947 33 1 0 108 0 1 267 0 1 6 chain 17695 chr4 191154276 + 108171229 108171462 L1PA8 5853 + 5625 5853 133717 57 1 0 5 3 1 52 2 1 19 1 0 93 chain 2630 chr4 191154276 + 108191024 108191094 MER52D 1964 - 731 792 231281 12 31 22 27 chain 20796 chr4 191154276 + 108243804 108244180 L1PA14 3548 - 106 465 124618 28 1 0 16 1 0 4 2 1 15 4 2 33 20 15 107 1 0 62 9 10 12 1 0 6 2 0 13 8 4 31 chain 123521 chr4 191154276 + 108249814 108251468 HERVK14-int 1672 + 1 1635 29873 29 1 0 7 8 7 34 11 10 212 6 5 29 2 0 234 1 0 25 2 1 225 1 0 105 0 1 57 1 0 79 1 0 3 1 0 7 2 0 29 6 5 203 1 0 108 1 0 41 7 0 6 16 22 25 2 0 9 1 0 116 chain 42745 chr4 191154276 + 108272073 108272617 MER41C 542 - 0 542 65728 215 9 6 271 0 1 49 chain 74811 chr4 191154276 + 108274978 108275967 LTR13 1007 - 0 1007 46109 31 3 1 18 0 2 6 4 2 7 0 2 237 0 14 16 1 0 42 2 1 238 9 10 109 0 2 32 0 9 160 6 0 68 chain 101757 chr4 191154276 + 108276699 108277786 L1HS 6032 + 4945 6032 36329 1087 chain 62294 chr4 191154276 + 108277817 108278494 L1PA4 6152 + 5474 6151 51755 677 chain 20603 chr4 191154276 + 108285123 108285459 THE1C 375 + 7 345 125286 38 5 11 14 15 16 92 18 20 96 0 2 12 9 0 37 chain 27031 chr4 191154276 + 108285799 108286137 THE1C-int 1605 + 0 337 96185 14 2 1 322 chain 34692 chr4 191154276 + 108300690 108301189 LTR10D 510 + 0 510 76635 76 6 4 18 1 9 39 0 1 5 6 7 70 2 0 5 6 9 176 2 0 42 0 4 45 chain 36145 chr4 191154276 + 108309210 108309721 LTR10D 510 + 0 510 74715 74 13 5 6 1 0 13 1 9 39 0 1 82 2 0 5 6 9 176 2 0 91 chain 9678 chr4 191154276 + 108319267 108319396 MER85 139 + 0 139 162199 90 2 12 37 chain 321078 chr4 191154276 + 108330149 108334240 L1P3 4156 + 0 4137 12554 225 0 15 11 29 13 56 2 1 472 0 1 385 0 10 21 0 4 40 0 1 63 1 2 64 6 9 157 1 2 6 2 0 572 0 18 67 3 0 179 1 5 225 1 6 39 2 1 15 0 1 5 0 1 405 0 4 191 11 12 305 1 0 149 11 14 335 2 0 6 1 0 24 chain 204469 chr4 191154276 + 108337510 108340525 HERVIP10FH-int 2884 + 149 2876 18891 59 5 0 190 8 0 211 0 1 17 1 0 55 1 3 185 0 1 300 1 0 209 4 1 7 3 0 9 1 0 7 2 1 57 1 0 6 6 1 127 64 43 12 7 1 14 20 3 43 19 7 42 10 0 3 1 0 15 10 9 29 0 5 228 1 0 201 4 3 19 2 1 145 1 3 214 7 6 62 2 1 51 1 0 15 1 0 14 10 4 33 209 24 9 2 0 16 2 0 5 chain 42379 chr4 191154276 + 108340586 108341160 LTR10F 562 + 0 514 66180 99 37 0 133 25 0 74 0 2 206 chain 155656 chr4 191154276 + 108341162 108343094 L1PA7 6471 + 4499 6465 23897 25 0 2 143 0 8 487 7 1 269 17 40 142 6 5 77 0 2 135 0 1 213 6 7 75 0 1 135 0 2 177 0 3 10 2 0 6 chain 193706 chr4 191154276 + 108358366 108360925 Charlie3 2679 - 6 2656 19709 61 28 19 128 0 1 53 0 3 49 6 7 236 27 53 359 0 1 124 0 3 367 0 4 9 0 2 262 4 2 314 1 0 8 0 1 147 0 62 361 4 3 11 chain 54296 chr4 191154276 + 108380658 108381392 L1PA13 3608 + 2771 3497 56163 361 1 0 28 1 0 103 15 13 60 1 0 60 2 0 38 0 1 9 2 0 4 2 0 19 1 0 21 0 3 6 chain 16172 chr4 191154276 + 108396629 108396854 AluY 311 + 84 306 137834 48 0 1 79 6 0 51 7 9 34 chain 83044 chr4 191154276 + 108396966 108397905 L1PA5 6144 - 0 951 42315 774 0 11 64 0 1 101 chain 8576 chr4 191154276 + 108399022 108399136 LTR8 732 - 593 701 167868 97 6 0 11 chain 4654 chr4 191154276 + 108400516 108400579 L1M2 1805 - 1523 1586 199019 23 1 0 5 0 1 34 chain 150211 chr4 191154276 + 108404925 108406758 L1PA7 6471 + 4516 6458 24584 138 0 92 497 10 11 159 0 9 58 1 4 23 0 6 108 1 0 13 5 0 228 0 4 270 0 1 171 2 0 5 3 4 141 chain 9174 chr4 191154276 + 108427488 108427599 L1PA7 6471 - 26 137 164688 111 chain 54221 chr4 191154276 + 108427599 108428224 L1PA7 6471 + 5723 6350 56213 413 0 1 178 0 1 34 chain 9286 chr4 191154276 + 108429773 108429917 MER44A 345 + 37 200 164138 35 4 18 16 2 0 65 1 8 21 chain 184654 chr4 191154276 + 108447197 108449224 L1PA3long 6157 + 4127 6157 20527 669 0 2 1211 1 2 146 chain 87044 chr4 191154276 + 108468506 108469523 L1PA5 6144 - 0 1024 40756 125 1 2 20 1 3 479 0 3 224 0 1 167 chain 293097 chr4 191154276 + 108501117 108505064 L1PA10 4194 + 223 4150 13818 9 2 0 9 1 0 9 1 0 21 2 0 15 34 33 16 2 0 21 5 7 11 1 0 6 8 0 15 7 0 10 1 0 83 2 0 190 0 1 72 1 2 5 1 0 122 0 10 395 8 1 288 7 1 7 0 7 171 1 0 61 5 0 57 1 0 137 6 10 109 5 8 161 0 1 302 5 6 67 0 4 163 0 2 363 8 7 347 6 5 515 0 3 28 8 5 10 9 4 15 chain 230619 chr4 191154276 + 108507710 108511176 MER61-int 3695 - 0 3412 17277 51 24 12 23 6 4 44 1 0 82 3 0 45 2 3 50 2 0 8 0 2 7 0 1 11 16 0 193 10 7 138 161 154 94 13 18 139 3 1 393 0 3 26 0 3 12 0 3 36 0 1 340 10 6 117 0 1 6 0 1 223 0 1 35 0 4 22 5 6 29 28 27 21 33 15 52 0 3 268 0 2 23 1 0 74 2 0 50 0 1 115 4 7 40 1 2 27 9 12 128 0 1 60 15 1 75 17 10 43 chain 55126 chr4 191154276 + 108518061 108518698 L1PA6 6164 + 5517 6152 55624 144 2 0 170 0 1 315 1 0 5 chain 15937 chr4 191154276 + 108527898 108528110 Tigger3a 397 + 158 374 138561 142 9 13 61 chain 24348 chr4 191154276 + 108531873 108532227 THE1A 353 + 0 353 108384 13 3 0 34 7 8 34 6 5 17 0 2 6 3 1 175 0 2 56 chain 26167 chr4 191154276 + 108554804 108555096 AluYk4 311 + 11 303 99335 292 chain 31791 chr4 191154276 + 108589546 108590012 MLT2A1 477 + 0 469 81187 38 1 0 122 11 8 13 0 1 22 0 1 178 0 2 11 3 0 7 10 0 8 13 29 29 chain 535223 chr4 191154276 + 108593238 108599341 L1PA4 6152 + 2 6140 3566 332 1 0 349 0 3 23 1 4 727 1 0 99 0 15 496 0 14 209 0 1 903 1 0 332 0 1 428 11 12 2190 chain 52554 chr4 191154276 + 108605358 108606067 MER4E1 777 + 0 747 57266 23 0 2 138 0 1 20 3 4 137 0 23 11 4 5 69 0 1 23 1 0 86 10 7 33 0 13 151 chain 42531 chr4 191154276 + 108613050 108613617 L1PA11 4918 + 3869 4488 65977 46 0 1 32 0 3 161 1 0 137 0 47 35 1 6 56 2 1 81 4 2 11 chain 24237 chr4 191154276 + 108629938 108630319 MER57B1 401 + 0 392 109014 31 2 1 33 30 34 12 6 7 157 8 11 68 0 4 34 chain 5361 chr4 191154276 + 108643726 108643848 L1MC5 759 + 215 346 191419 63 45 54 14 chain 27291 chr4 191154276 + 108643944 108644370 MLT2A1 477 - 0 477 95301 19 1 0 33 2 38 214 12 16 12 6 7 53 34 45 40 chain 455265 chr4 191154276 + 108644370 108652063 HERVL-int 5654 - 0 5654 8568 64 0 1 34 15 0 7 10 28 85 0 1 196 15 13 109 0 5 79 4 0 128 0 3 624 4 5 1058 16 17 673 4 11 246 31 0 149 0 1 81 0 1 3 683 0 40 1 2 136 1 0 122 0 1 162 2 1 147 0 1 468 1346 14 320 0 1 12 22 7 353 0 2 243 chain 2752 chr4 191154276 + 108658582 108658612 PABL_B-int 1449 + 1338 1368 229469 30 chain 19643 chr4 191154276 + 108685013 108685425 L1PB1 5432 - 18 394 128272 10 1 0 13 1 0 21 11 10 14 2 0 15 7 4 19 26 14 14 1 0 43 1 0 16 2 1 6 0 1 45 2 0 9 7 3 10 1 0 8 1 0 24 3 0 5 9 6 65 chain 7571 chr4 191154276 + 108685425 108685530 L1PB1 5432 + 4899 5002 173718 19 3 1 83 chain 26405 chr4 191154276 + 108693532 108693892 THE1B 368 - 0 368 98391 62 21 30 103 2 1 172 chain 20416 chr4 191154276 + 108744603 108744870 L1MA3 4352 - 871 1158 125848 94 3 0 69 0 14 26 0 7 58 0 2 17 chain 31263 chr4 191154276 + 108751326 108751932 L1PA15 4387 - 21 604 82059 10 1 0 28 7 2 11 3 1 44 66 58 27 1 0 55 1 0 28 1 0 17 13 9 60 1 6 50 0 1 27 1 0 41 4 2 21 11 14 24 6 0 47 chain 138426 chr4 191154276 + 108767267 108768783 L1PA3long 6157 - 0 1513 26408 14 3 0 1499 chain 54672 chr4 191154276 + 108804973 108805649 MER4-int 2692 + 1989 2679 55926 164 0 3 114 4 7 106 0 3 88 1 4 167 0 2 32 chain 31328 chr4 191154276 + 108805667 108806107 MER4A1 472 + 0 472 81941 15 5 7 73 6 15 20 14 11 5 0 3 77 5 26 220 chain 142821 chr4 191154276 + 108807662 108809544 MER4-int 2692 - 715 2616 25681 17 3 0 21 0 1 33 0 9 7 8 1 26 1 0 81 1 2 191 11 5 36 1 0 39 6 1 24 1 6 28 10 16 9 2 0 228 0 3 53 4 5 38 0 3 165 0 3 6 0 1 79 0 1 83 1 0 28 0 5 8 0 1 103 1 5 186 0 5 151 0 1 145 4 0 19 1 0 23 chain 33763 chr4 191154276 + 108813614 108814035 MER4A1 472 - 0 442 77996 220 15 36 186 chain 92618 chr4 191154276 + 108846336 108847422 L1PA6 6164 + 5070 6162 38777 248 0 4 364 0 1 18 1 0 11 1 0 294 1 2 139 0 2 9 chain 520676 chr4 191154276 + 108877887 108883979 L1PA5 6144 + 0 6142 5085 120 0 14 22 0 12 246 0 11 386 0 17 151 1 2 188 9 0 21 4 5 719 1 0 1209 0 2 383 0 1 548 0 8 816 0 1 412 1 0 132 9 0 524 3 5 187 chain 24213 chr4 191154276 + 108895935 108896308 THE1C 375 + 0 375 109135 114 0 1 27 7 11 33 7 8 18 29 25 138 chain 49127 chr4 191154276 + 108908914 108909495 LTR10C 591 + 0 586 59652 103 0 2 163 0 1 239 0 2 76 chain 14545 chr4 191154276 + 108924275 108924572 MLT1A1 405 - 12 340 142740 12 1 0 49 1 0 44 0 3 14 43 70 14 23 27 21 7 6 68 chain 5944 chr4 191154276 + 108930454 108930549 MER3 215 + 89 195 185739 9 1 0 50 6 18 29 chain 49093 chr4 191154276 + 108933472 108934063 LTR10C 591 - 0 591 59675 47 0 1 31 0 2 142 3 0 263 0 2 69 2 0 34 chain 229849 chr4 191154276 + 108961608 108964150 L1PA3long 6157 - 0 2556 17314 1761 0 2 6 0 7 20 0 4 80 0 1 675 chain 3365 chr4 191154276 + 108998750 108998882 SVA_F 1814 + 375 1235 217771 36 74 802 22 chain 7696 chr4 191154276 + 109020800 109020903 L1PA7 6471 - 37 138 172962 68 4 2 31 chain 6838 chr4 191154276 + 109099404 109099566 MER33 330 - 39 226 178667 18 5 30 46 48 48 45 chain 27898 chr4 191154276 + 109107684 109107975 AluYd8 298 - 7 298 93377 291 chain 21084 chr4 191154276 + 109138731 109139149 L1PA14 3548 - 63 461 123607 20 1 0 10 6 0 38 0 5 14 1 0 6 1 0 10 9 7 31 17 12 102 2 0 5 5 4 66 0 1 8 42 35 24 chain 17111 chr4 191154276 + 109147705 109147945 MER2 342 - 17 256 135277 10 1 0 16 6 7 146 1 0 60 chain 7881 chr4 191154276 + 109149562 109149656 MSTA 426 + 331 425 171803 94 chain 20547 chr4 191154276 + 109152265 109152636 L1PA15 4387 - 33 384 125479 25 5 0 2 1 0 11 4 2 25 1 0 19 19 16 34 5 4 10 4 0 21 1 0 55 1 0 25 6 5 97 chain 41801 chr4 191154276 + 109171834 109172305 L1PA5 6144 + 5443 5914 66895 471 chain 19868 chr4 191154276 + 109172305 109172534 L1PA5 6144 + 5916 6144 127598 207 1 0 21 chain 9766 chr4 191154276 + 109185095 109185341 Tigger3 1187 + 479 723 161767 64 1 0 17 2 0 3 3 0 4 1 0 13 0 1 20 78 83 13 1 0 26 chain 41809 chr4 191154276 + 109187293 109187762 L1PA3long 6157 + 5688 6157 66883 469 chain 102315 chr4 191154276 + 109187831 109188969 L1PA3long 6157 - 1006 2145 36190 665 1 2 472 chain 91244 chr4 191154276 + 109188969 109189981 L1PA3long 6157 + 5146 6157 39182 869 1 0 142 chain 6006 chr4 191154276 + 109206237 109206325 MER51A 677 - 419 498 185191 59 9 0 20 chain 20321 chr4 191154276 + 109217813 109218158 THE1C 375 + 0 375 126176 81 60 54 49 1 2 86 3 38 65 chain 2856 chr4 191154276 + 109218451 109218481 U2 167 + 0 30 227720 30 chain 95726 chr4 191154276 + 109220214 109221565 L1PB1 5432 - 5 1315 37890 5 2 0 18 1 0 12 1 0 22 1 0 24 2 0 15 1 0 4 2 0 15 5 4 11 14 1 16 2 1 42 5 0 16 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 7 0 7 1 4 70 0 1 31 1 0 4 1 2 221 0 3 5 3 0 144 7 8 497 chain 14716 chr4 191154276 + 109221565 109221732 L1PB1 5432 + 3946 4113 142217 167 chain 2950 chr4 191154276 + 109228827 109228866 L1MC1 2226 + 2083 2120 226068 21 2 0 16 chain 3047 chr4 191154276 + 109240507 109240544 L1MC4 1079 - 201 238 224070 37 chain 24646 chr4 191154276 + 109310189 109310546 L1PA8 5853 + 5504 5853 106746 60 1 0 31 0 1 4 11 8 71 1 0 7 0 1 1 2 0 6 1 0 46 2 1 21 1 0 91 chain 160178 chr4 191154276 + 109330003 109331741 SVA_E 1901 + 0 1901 23316 145 4 0 179 3 0 493 1 0 19 2 172 213 0 1 679 chain 3929 chr4 191154276 + 109345715 109345761 MADE1 96 + 3 49 208429 46 chain 21466 chr4 191154276 + 109354431 109354676 L1PA5 6144 - 5 250 122268 245 chain 541625 chr4 191154276 + 109356581 109362745 L1PA4 6152 - 0 6152 2570 6 0 5 249 1 0 2382 0 1 344 1 0 178 0 1 177 0 4 312 0 1 1076 0 1 1021 23 0 394 chain 46885 chr4 191154276 + 109372506 109373019 L1PA5 6144 - 12 525 61319 513 chain 30002 chr4 191154276 + 109395419 109395794 THE1C 375 + 0 375 84803 375 chain 24062 chr4 191154276 + 109397500 109397805 AluSg7 307 - 2 307 109971 55 0 1 93 7 8 16 1 0 14 1 0 118 chain 8128 chr4 191154276 + 109409046 109409172 MSTA 426 - 0 150 170345 27 0 4 64 15 35 20 chain 429093 chr4 191154276 + 109424289 109430387 L1PA7 6471 + 5 6467 9331 92 39 25 80 154 355 8 4 0 17 272 375 32 18 11 40 76 80 126 2 27 6 1 0 9 9 10 51 40 43 8 3 0 82 85 94 320 0 3 128 0 1 492 0 2 98 10 38 871 1 0 253 7 8 105 0 5 377 0 2 392 0 4 289 1 2 226 11 1 34 0 1 221 0 1 171 0 3 378 0 1 181 0 5 278 chain 14587 chr4 191154276 + 109430700 109431016 L1PB1 5432 + 5114 5400 142638 24 1 0 6 1 0 12 7 3 9 2 0 52 18 16 45 1 0 15 2 0 8 17 7 15 3 1 5 1 0 14 14 12 12 1 0 22 1 0 8 chain 72185 chr4 191154276 + 109437174 109438109 L1PA10 4194 + 3215 4150 47382 129 1 0 380 1 0 24 1 0 80 0 1 187 0 5 61 1 0 19 31 29 20 chain 10367 chr4 191154276 + 109447280 109447408 MER85 139 - 0 138 158842 40 0 10 88 chain 12414 chr4 191154276 + 109462444 109462625 MSTB 430 + 7 187 150576 76 5 6 62 9 7 29 chain 17377 chr4 191154276 + 109483882 109484077 L1PA5 6144 + 5943 6138 134570 195 chain 5813 chr4 191154276 + 109490671 109490878 L1MC1 2226 + 1983 2167 187008 12 2 0 50 111 91 16 1 0 15 chain 19635 chr4 191154276 + 109504808 109505197 L1PB1 5432 + 5068 5422 128298 35 1 2 9 3 0 20 1 0 11 2 1 12 5 1 9 2 0 51 1 0 17 1 0 44 1 0 16 3 0 6 18 7 18 2 0 4 1 0 15 2 0 24 1 0 21 1 0 9 5 4 18 chain 11407 chr4 191154276 + 109514713 109514873 L1PA8 5853 - 0 158 154668 92 4 3 17 2 1 45 chain 31137 chr4 191154276 + 109515397 109515743 HERV-Fc1_LTR1 345 - 0 345 82274 65 1 0 280 chain 15587 chr4 191154276 + 109524115 109524295 L1PA3long 6157 - 15 198 139624 113 1 4 66 chain 23239 chr4 191154276 + 109534959 109535273 Tigger3b 1229 + 883 1204 114499 60 3 0 6 0 7 225 3 6 17 chain 8999 chr4 191154276 + 109573305 109573412 U6 107 + 0 107 165600 107 chain 2110 chr4 191154276 + 109629770 109629792 L1PA7 6471 + 5938 5960 237548 22 chain 14710 chr4 191154276 + 109629794 109629964 L1PA7 6471 + 5960 6130 142237 170 chain 26690 chr4 191154276 + 109629965 109630293 L1PA7 6471 + 6130 6463 97349 107 0 4 217 0 1 4 chain 246720 chr4 191154276 + 109631304 109634344 HERVH-int 3825 + 683 3825 16413 15 2 1 80 1 0 447 15 0 459 4 31 290 1 15 281 136 0 768 9 11 38 0 210 269 0 2 225 chain 3484 chr4 191154276 + 109632998 109633035 HERVH-int 3825 + 2264 2301 215619 37 chain 29687 chr4 191154276 + 109635605 109636007 LTR7 482 + 0 482 85876 54 23 61 109 0 1 39 0 31 19 0 10 158 chain 10222 chr4 191154276 + 109670088 109670217 L1PA8 5853 + 5726 5853 159504 18 1 0 16 1 0 93 chain 29000 chr4 191154276 + 109671265 109671646 MLT2A1 477 + 0 378 88984 64 9 1 52 1 0 4 0 1 20 0 1 26 0 4 205 chain 14128 chr4 191154276 + 109691474 109691643 AluSp 311 + 142 305 144112 155 6 0 8 chain 6809 chr4 191154276 + 109694310 109694427 MER21B 843 + 338 464 178882 23 21 22 56 0 8 17 chain 41394 chr4 191154276 + 109774684 109775161 L1PA7 6471 - 10 488 67419 9 0 1 468 chain 72588 chr4 191154276 + 109775161 109776025 L1PA7 6471 + 5097 5967 47225 400 0 1 101 0 4 19 12 13 332 chain 12402 chr4 191154276 + 109793601 109793821 Charlie1 1172 + 679 918 150633 52 19 20 33 11 19 58 3 13 44 chain 93591 chr4 191154276 + 109796301 109797374 L1PA6 6164 + 5088 6162 38477 1001 0 1 72 chain 6194 chr4 191154276 + 109807649 109807728 MER30 238 + 136 232 183622 16 0 17 63 chain 5703 chr4 191154276 + 109816899 109817084 L1PB1 5432 - 10 170 188077 4 1 0 14 1 0 28 8 7 23 28 20 15 19 9 6 1 0 16 4 1 17 chain 7693 chr4 191154276 + 109826581 109826666 L1PA2 6032 + 5929 6014 172971 85 chain 50045 chr4 191154276 + 109855081 109855645 L1PA6 6164 + 5596 6159 58987 413 1 0 150 chain 108857 chr4 191154276 + 109904693 109906072 LTR12C 1709 - 0 1709 34472 107 1 13 361 0 4 104 6 4 4 1 0 13 0 160 91 0 118 211 0 1 40 18 14 83 0 43 38 0 4 7 8 0 8 0 4 6 1 0 271 chain 9675 chr4 191154276 + 109914434 109914586 L1MA8 2339 - 293 437 162215 36 2 1 52 3 0 20 12 8 27 chain 510070 chr4 191154276 + 109915141 109921282 L1PA6 6164 + 0 6162 6159 449 8 0 42 5 6 70 1 0 125 0 1 94 0 17 99 0 4 733 3 4 624 0 2 50 13 5 72 0 4 254 4 0 585 0 4 973 0 4 8 8 6 124 1 9 303 1 2 1329 1 6 8 5 0 137 3 0 9 chain 20507 chr4 191154276 + 109923932 109924236 L1PA8 5853 - 0 293 125609 93 1 0 19 2 1 44 19 18 70 2 0 3 6 0 45 chain 4243 chr4 191154276 + 109934197 109934310 LTR12C 1709 + 1120 1195 203969 27 50 12 36 chain 73596 chr4 191154276 + 109942462 109943466 MER11A 1151 + 0 1151 46733 55 0 99 133 16 13 27 0 2 49 12 13 52 0 1 89 0 1 3 0 1 21 1 0 114 6 9 8 1 0 55 0 12 46 1 0 15 7 41 226 7 6 60 chain 12908 chr4 191154276 + 109945151 109945398 Tigger5 388 + 114 340 148605 12 28 13 89 8 7 23 2 0 13 1 0 27 3 1 41 chain 10724 chr4 191154276 + 109968550 109968765 L1PB1 5432 + 5221 5420 157303 15 1 0 44 1 0 16 1 0 4 47 33 13 2 0 24 1 0 17 0 5 12 1 0 16 chain 38395 chr4 191154276 + 109991694 109992123 L1PA5 6144 - 0 430 71579 168 0 1 261 chain 94376 chr4 191154276 + 109992123 109993154 L1PA5 6144 + 4653 5684 38237 1031 chain 53675 chr4 191154276 + 110029198 110029792 L1PA4 6152 - 11 605 56560 594 chain 9333 chr4 191154276 + 110047967 110048076 L1PA3long 6157 + 6051 6157 163890 101 3 0 5 chain 12567 chr4 191154276 + 110051031 110051170 L1PA2 6032 + 5893 6032 149981 139 chain 465411 chr4 191154276 + 110059171 110065752 L1PA7 6471 - 28 5710 8205 650 343 11 102 12 0 62 1 4 272 0 6 177 609 0 210 2 0 688 0 1 260 1 0 211 1 2 145 22 24 71 0 5 422 0 5 13 1 5 13 0 1 185 5 9 68 0 1 60 0 4 6 3 5 50 1 0 434 0 2 30 0 1 7 4 5 427 0 1 182 0 12 128 1 0 66 2 5 634 chain 49492 chr4 191154276 + 110060835 110061399 L1PA4 6152 - 5 570 59393 137 1 2 12 1 0 162 0 1 251 chain 10047 chr4 191154276 + 110160297 110160417 Tigger3b 1229 - 14 134 160340 120 chain 73621 chr4 191154276 + 110190087 110190890 L1PA2 6032 - 0 803 46720 803 chain 60634 chr4 191154276 + 110190890 110191573 L1P1 4361 + 3647 4328 52500 503 1 0 155 1 0 23 chain 10565 chr4 191154276 + 110211830 110212036 MER30 238 - 0 238 157975 45 0 3 18 23 58 9 4 0 5 2 1 69 14 13 17 chain 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L1PA6 6164 + 5785 6161 81526 223 0 1 145 2 0 7 chain 33410 chr4 191154276 + 110286324 110286785 L1PA8 5853 - 0 463 78545 92 6 5 15 4 12 35 17 15 69 2 0 45 2 1 174 chain 5462 chr4 191154276 + 110308736 110308799 LTR9B 643 - 580 643 190390 63 chain 18232 chr4 191154276 + 110313502 110313800 THE1B 368 - 77 368 132255 92 39 30 46 15 17 106 chain 16084 chr4 191154276 + 110313806 110313999 THE1B-int 1605 - 6 200 138102 130 0 1 63 chain 25337 chr4 191154276 + 110320779 110321067 AluSp 311 - 12 300 103036 288 chain 47887 chr4 191154276 + 110335220 110335806 LTR66 600 - 0 600 60566 95 0 16 76 2 0 413 chain 6576 chr4 191154276 + 110350092 110350177 MER5A1 166 + 0 79 180650 32 6 0 47 chain 5402 chr4 191154276 + 110378088 110378262 Charlie1a 1436 - 1196 1369 190973 25 93 92 56 chain 24669 chr4 191154276 + 110428788 110429089 AluSp 311 - 4 300 106615 11 5 0 285 chain 25318 chr4 191154276 + 110430558 110430858 AluY 311 + 11 308 103129 46 4 0 75 0 1 175 chain 24120 chr4 191154276 + 110448100 110448388 AluSx1 309 + 8 296 109640 288 chain 36170 chr4 191154276 + 110472407 110472962 L1PB2 3958 - 120 656 74676 13 4 7 39 6 5 80 6 0 12 2 1 64 1 0 75 1 0 90 4 0 14 2 0 7 2 4 51 5 0 15 1 0 54 2 0 5 chain 28537 chr4 191154276 + 110498754 110499065 AluYf4 310 - 1 310 91013 43 2 0 266 chain 504874 chr4 191154276 + 110501045 110508749 L1PA6 6164 - 3 6164 6549 48 0 1 72 0 3 721 0 1 4 7 10 143 1691 0 16 1 0 213 0 1 80 0 5 473 0 2 49 1 0 530 0 114 484 3 1 452 0 2 134 16 20 833 0 4 177 6 0 461 5 6 277 0 17 236 0 1 110 1 0 460 chain 146019 chr4 191154276 + 110502053 110503691 L1PA4 6152 + 4507 6151 25169 289 2 0 508 0 4 383 0 2 345 0 1 15 0 1 96 chain 170325 chr4 191154276 + 110517881 110519798 SVA_D 2077 - 0 2071 22010 12 8 0 664 9 8 4 0 1 53 0 78 172 0 51 47 0 1 32 0 36 10 2 0 699 1 0 178 1 0 25 chain 186672 chr4 191154276 + 110522758 110527895 L1MA2 4263 - 207 4211 20365 25 0 4 62 11 9 147 3 0 23 1 2 33 0 4 73 0 3 9 6 18 19 0 1 38 7 0 6 1 4 11 1 0 15 0 1 5 1 0 192 9 15 219 0 4 53 0 1 4 0 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110561528 LTR7B 505 - 0 505 92396 12 10 8 28 17 16 29 0 13 62 1 4 76 2 25 17 16 15 76 0 31 93 chain 14462 chr4 191154276 + 110568353 110568703 L1MC1 2226 - 34 353 143011 8 1 0 32 1 0 12 1 0 11 0 1 5 12 4 15 6 4 17 5 0 11 32 29 50 25 21 58 1 0 26 7 1 14 chain 23291 chr4 191154276 + 110581689 110582000 AluSp 311 + 0 296 114253 40 1 0 237 19 5 14 chain 145050 chr4 191154276 + 110598972 110600783 SVA_A 1864 - 0 1842 25316 619 2 0 78 3 0 23 1 0 48 0 71 40 3 0 51 40 0 49 1 0 8 2 0 58 0 1 6 3 0 49 1 0 104 17 14 62 4 6 31 3 0 10 1 4 411 0 24 63 8 0 12 chain 59108 chr4 191154276 + 110602594 110603347 LTR17 781 - 0 781 53326 12 0 1 48 1 23 73 0 4 111 1 0 32 6 5 80 1 0 65 0 1 17 10 0 181 0 13 115 chain 6301 chr4 191154276 + 110630359 110630491 MER5A 189 + 51 187 182790 25 6 7 45 1 3 16 26 27 13 chain 5155 chr4 191154276 + 110637876 110637936 MER68 562 + 480 540 193493 60 chain 10129 chr4 191154276 + 110640752 110640964 Tigger1a_Art 216 - 6 216 159956 23 11 28 13 18 1 11 1 0 61 11 13 12 4 1 47 chain 49705 chr4 191154276 + 110656858 110657536 LTR76 689 - 0 682 59233 72 10 19 78 6 0 39 0 6 348 1 0 8 3 0 70 1 0 42 chain 21648 chr4 191154276 + 110677745 110678027 AluSg7 307 + 10 280 121580 121 0 1 127 20 7 14 chain 118309 chr4 191154276 + 110688117 110689433 L1PA4 6152 + 4820 6137 31686 1300 0 1 16 chain 523261 chr4 191154276 + 110696201 110702308 L1PA5 6144 + 0 6139 4842 120 1 15 18 3 15 512 0 3 109 0 10 144 0 3 132 2 21 67 9 0 1056 17 16 67 8 0 950 0 2 621 1 0 985 0 3 89 15 0 12 0 1 126 1 0 1042 chain 220387 chr4 191154276 + 110702357 110705321 L1PB1 5432 + 2504 5413 17856 92 1 0 109 0 4 124 11 9 640 23 8 96 0 1 148 0 1 182 8 6 68 1 0 149 0 1 479 0 2 480 23 11 24 1 0 9 16 11 9 2 0 50 8 7 13 1 0 38 47 34 18 8 5 14 2 0 24 1 0 20 2 1 13 1 0 9 chain 35563 chr4 191154276 + 110705969 110706418 LTR7B 505 + 0 505 75462 82 1 0 11 0 31 84 7 5 22 2 27 68 0 3 172 chain 21469 chr4 191154276 + 110743033 110743315 L1PA8 5853 + 5576 5853 122261 32 2 0 71 1 0 14 1 0 7 0 1 38 3 2 19 1 0 93 chain 31854 chr4 191154276 + 110761275 110761725 L1PA11 4918 - 401 837 81091 9 4 0 15 9 8 12 2 0 51 0 3 13 4 0 12 2 1 62 5 0 250 chain 271285 chr4 191154276 + 110773766 110777066 L1PA7 6471 - 7 3372 15120 16 0 14 297 0 1 78 0 5 350 1 0 82 7 1 107 3 0 89 1 0 75 1 0 47 0 8 102 0 1 171 0 2 64 2 0 5 1 0 273 0 2 89 1 12 99 0 4 521 23 64 9 9 0 60 1 0 193 0 1 523 chain 32875 chr4 191154276 + 110777066 110777437 MER11D 897 - 526 897 79407 371 chain 39055 chr4 191154276 + 110777445 110777894 HERVK11D-int 613 - 8 456 70659 317 1 0 131 chain 73166 chr4 191154276 + 110780224 110781093 MER11D 897 - 0 897 46940 49 1 0 182 6 5 40 0 23 232 0 6 229 1 2 129 chain 20360 chr4 191154276 + 110806053 110806302 L1PA5 6144 - 5 271 126034 167 0 17 82 chain 13948 chr4 191154276 + 110813305 110813590 L1PB1 5432 + 5114 5370 144756 24 1 0 9 16 11 11 2 0 50 1 0 14 6 5 42 1 0 16 3 0 6 21 11 14 2 0 5 1 0 14 2 0 24 chain 544385 chr4 191154276 + 110815455 110821594 L1PA4 6152 - 1 6152 2158 8 2 0 1025 0 1 1940 1 0 12 1 0 153 0 1 612 0 4 675 3 0 1132 0 13 575 chain 128726 chr4 191154276 + 110827353 110829271 L1PB1 5432 + 3514 5422 28382 205 2 9 11 7 2 191 4 5 44 17 18 324 0 1 302 7 0 179 2 22 7 12 0 43 1 13 10 1 0 18 0 1 91 4 0 10 0 4 79 4 5 6 3 0 24 1 0 6 1 0 12 29 22 43 4 1 14 1 0 45 2 1 13 1 0 5 18 8 18 3 1 5 1 0 14 2 7 17 1 0 22 1 0 12 1 0 18 chain 486404 chr4 191154276 + 110854583 110860830 L1PA6 6164 - 2 6164 7504 779 138 0 804 0 1 206 0 8 382 1 10 15 1 0 5 0 1 248 1 0 461 0 4 21 6 5 22 14 15 49 0 3 101 0 1 224 7 11 199 0 4 116 2 0 6 10 12 84 0 1 30 6 0 107 0 1 123 14 39 248 0 1 163 2 1 596 1 0 4 0 1 88 0 1 4 1 0 140 1 18 112 4 5 115 1 0 115 19 0 24 6 7 421 chain 11252 chr4 191154276 + 110855362 110855497 L1P1 4361 - 44 178 154605 12 1 0 122 chain 22674 chr4 191154276 + 110890504 110890769 L1PA7 6471 + 6205 6470 117195 265 chain 23086 chr4 191154276 + 110891736 110892002 AluY 311 + 36 304 115211 96 0 1 11 0 1 159 chain 9580 chr4 191154276 + 110913480 110913587 U6 107 + 0 107 162694 107 chain 58358 chr4 191154276 + 110913587 110914258 L1PA5 6144 + 5469 6139 53773 114 1 0 556 chain 20952 chr4 191154276 + 110974818 110975106 AluY 311 + 5 294 124093 114 1 0 5 20 19 7 0 3 141 chain 16038 chr4 191154276 + 110987919 110988139 L1PA8 5853 - 0 216 138256 5 0 1 87 1 0 19 6 5 33 1 0 15 1 0 8 1 0 43 chain 196698 chr4 191154276 + 110997762 111000000 L1P1 4361 + 1 2235 19451 478 5 1 1755 chain 350213 chr4 191154276 + 111000000 111003902 L1PA4 6152 + 2241 6143 11597 803 0 2 137 2 0 2960 chain 25487 chr4 191154276 + 111023997 111024378 THE1A 353 + 0 353 102283 79 36 10 20 2 1 92 1 0 54 1 2 64 1 0 31 chain 18852 chr4 191154276 + 111042653 111042863 AluY 311 + 81 291 130507 210 chain 7233 chr4 191154276 + 111073743 111073856 MER5A1 166 - 24 139 175874 64 4 0 27 5 11 13 chain 5566 chr4 191154276 + 111123620 111123811 LTR21B 408 - 83 212 189422 29 2 0 40 102 42 18 chain 122185 chr4 191154276 + 111138748 111140303 THE1A-int 1579 - 5 1579 30316 67 0 2 468 22 23 292 1 2 68 0 1 434 1 4 71 1 10 115 0 2 15 chain 27868 chr4 191154276 + 111140303 111140656 THE1A 353 - 0 351 93462 51 2 1 191 1 0 108 chain 23261 chr4 191154276 + 111150388 111150729 THE1B 368 - 15 360 114380 41 7 6 64 1 0 24 0 4 14 14 15 16 1 0 104 0 2 55 chain 29052 chr4 191154276 + 111182612 111186685 L1MA3 4352 - 0 2135 88749 21 3 0 3 1 0 14 5 4 22 1 0 5 2 1 21 3 1 25 4 0 44 442 102 12 18 36 138 3035 1431 74 0 1 42 0 2 7 3 2 31 1 0 96 chain 31545 chr4 191154276 + 111194687 111195127 LTR7 482 + 0 471 81575 101 20 14 25 0 3 82 4 36 44 0 1 95 1 2 68 chain 360874 chr4 191154276 + 111200999 111205064 HERV17-int 4347 - 0 4068 11345 849 0 5 342 1 0 1522 1 2 159 2 0 1189 chain 41967 chr4 191154276 + 111205095 111205600 LTR17 781 - 0 526 66663 44 1 23 387 1 0 72 chain 4717 chr4 191154276 + 111227377 111227433 MER41B 635 - 98 154 198323 56 chain 539721 chr4 191154276 + 111242991 111249109 L1PA4 6152 - 15 6151 2862 135 0 1 2676 0 1 69 1 2 869 0 8 731 0 1 1118 1 6 353 4 5 161 chain 25359 chr4 191154276 + 111261923 111262208 L1PA3long 6157 - 0 285 102896 285 chain 20431 chr4 191154276 + 111262219 111262492 L1PA16 3655 - 383 654 125810 17 0 1 6 2 0 43 2 1 203 chain 91853 chr4 191154276 + 111290930 111292193 HSMAR1 1287 + 1 1285 39008 116 0 5 178 9 5 178 9 10 10 0 1 42 22 21 16 0 3 48 0 5 54 6 5 14 0 4 21 0 1 20 3 8 12 2 1 129 1 4 373 chain 85886 chr4 191154276 + 111302995 111304210 L1PREC2 3366 + 146 1343 41199 24 1 0 9 12 10 10 8 3 30 1 0 13 1 0 13 1 0 31 5 4 108 2 0 59 12 8 785 5 6 33 1 0 14 5 4 27 0 1 5 chain 471108 chr4 191154276 + 111306880 111312275 L1PA5 6144 - 0 6144 7999 333 0 1 1935 7 8 192 2 1 1092 0 1 240 2 0 529 0 1 61 1 0 681 5 6 40 1 0 183 0 749 91 chain 22442 chr4 191154276 + 111324163 111324421 AluSc5 308 - 50 308 118282 258 chain 39016 chr4 191154276 + 111326384 111327004 MER4A 717 + 0 678 70723 45 0 1 49 1 0 20 11 19 82 0 19 17 7 24 55 0 3 31 23 45 84 39 28 156 chain 514559 chr4 191154276 + 111327005 111332601 L1PA2 6032 - 0 6029 5720 3385 0 2 459 0 430 233 0 1 1519 chain 227440 chr4 191154276 + 111341353 111344077 L1PA6 6164 + 3399 6152 17454 506 1 0 66 0 2 505 0 6 293 0 1 160 0 4 472 17 5 290 1 3 260 28 49 93 0 6 32 chain 530871 chr4 191154276 + 111347363 111353780 L1PA7 6471 - 8 6471 4102 331 0 1 269 0 3 224 9 14 1135 0 1 522 0 1 385 1 0 69 8 7 15 7 8 92 0 16 183 6 5 204 15 24 149 0 1 167 3 0 240 22 0 7 0 22 12 0 3 599 2 1 271 0 1 250 0 1 10 0 8 799 0 1 15 0 1 396 chain 15329 chr4 191154276 + 111364771 111365405 MSTA 426 + 72 426 140393 36 34 58 31 376 52 44 4 24 109 chain 4076 chr4 191154276 + 111365885 111365944 MER65B 503 - 0 57 206256 5 2 0 52 chain 29313 chr4 191154276 + 111383219 111383530 AluYa5 310 - 0 310 87495 184 1 0 126 chain 28133 chr4 191154276 + 111410381 111410716 L1PA7 6471 + 6126 6462 92529 166 0 1 169 chain 29391 chr4 191154276 + 111424060 111424390 L1PA5 6144 - 0 328 87110 9 2 0 319 chain 3255 chr4 191154276 + 111453696 111453735 L1MB8 1703 - 367 406 219881 39 chain 42797 chr4 191154276 + 111480945 111481474 L1PA8 5853 - 0 523 65662 93 2 1 18 2 1 52 1 0 9 1 0 70 2 0 47 1 0 41 0 1 190 chain 15947 chr4 191154276 + 111494816 111495078 L1MA4A 3247 + 2955 3206 138528 14 4 1 137 1 0 23 24 18 31 3 0 20 0 2 5 chain 11971 chr4 191154276 + 111499808 111500000 L1PA14 3548 - 94 276 152318 40 1 0 18 1 0 9 1 0 9 4 2 34 5 1 10 1 0 59 chain 19403 chr4 191154276 + 111517244 111517459 L1PA3long 6157 + 5942 6157 128940 215 chain 27337 chr4 191154276 + 111520142 111520500 THE1B 368 - 0 368 95150 173 4 0 23 1 0 113 0 15 44 chain 24006 chr4 191154276 + 111526689 111526979 AluSp 311 + 8 301 110294 83 0 3 207 chain 50469 chr4 191154276 + 111527844 111528416 L1PA5 6144 - 13 585 58668 572 chain 3658 chr4 191154276 + 111577654 111577700 MIR 256 + 210 256 212594 46 chain 540292 chr4 191154276 + 111608623 111614840 L1PA3long 6157 - 7 6156 2774 135 1 2 705 0 3 1676 206 0 1442 0 2 1281 0 128 411 0 1 157 0 2 52 0 1 151 chain 5340 chr4 191154276 + 111625903 111626048 MER20 218 + 52 193 191643 22 51 46 30 6 7 36 chain 9097 chr4 191154276 + 111629752 111629892 L1PA8 5853 - 0 135 165083 69 0 1 22 2 1 15 10 5 22 chain 195738 chr4 191154276 + 111642315 111645208 L1PB1 5432 - 2 2815 19524 4 1 0 4 1 0 18 1 0 12 6 5 17 1 0 24 2 0 11 48 35 4 1 0 16 2 1 39 8 7 12 2 1 52 2 0 6 24 19 5 1 0 20 49 20 14 10 6 111 1 3 160 0 1 5 2 1 5 0 1 92 0 1 66 4 0 12 1 0 395 8 0 153 4 1 82 1 0 27 1 0 239 0 2 418 4 13 8 7 0 3 2 0 38 1 0 52 1 0 346 2 1 7 0 1 29 12 11 177 chain 11958 chr4 191154276 + 111657225 111657398 MER30 238 - 0 181 152368 48 3 0 65 6 17 51 chain 557573 chr4 191154276 + 111678641 111684783 L1PA3long 6157 - 0 6151 546 1799 0 4 2502 0 5 1841 chain 126596 chr4 191154276 + 111730440 111731874 L1PA5 6144 + 4688 6128 28921 609 0 4 509 0 1 190 0 1 7 0 1 22 1 0 96 chain 100476 chr4 191154276 + 111748435 111749573 L1PA5 6144 - 0 1145 36637 869 0 4 251 0 3 18 chain 90269 chr4 191154276 + 111749576 111750591 L1PA5 6144 + 4003 5019 39549 921 0 1 94 chain 5608 chr4 191154276 + 111774535 111774615 MADE1 96 - 0 96 189002 43 1 17 36 chain 545681 chr4 191154276 + 111791965 111797977 L1PA2 6032 - 7 6032 1991 10 0 6 3743 0 4 96 0 1 347 0 1 702 0 1 858 5 4 179 0 1 72 chain 28857 chr4 191154276 + 111805917 111806323 MLT2A1 477 - 80 477 89638 12 8 0 180 1 2 19 17 15 169 chain 27974 chr4 191154276 + 111808765 111809064 AluYb8 318 + 15 314 93098 299 chain 3876 chr4 191154276 + 111812893 111812936 MER66C 541 + 374 417 209222 43 chain 117003 chr4 191154276 + 111812965 111814407 L1PA8 5853 + 4384 5847 32124 285 4 5 60 0 1 274 0 2 383 0 4 85 0 1 31 0 1 46 1 0 45 3 1 71 19 19 30 0 15 17 1 0 87 chain 11468 chr4 191154276 + 111849582 111849707 L1P1 4361 + 2500 2625 154434 125 chain 48309 chr4 191154276 + 111980388 111980913 L1PA2 6032 - 1 526 60237 525 chain 52179 chr4 191154276 + 111980913 111981481 L1PA2 6032 + 4962 5530 57512 568 chain 144097 chr4 191154276 + 112000000 112001807 L1PA8A 6298 + 4476 6291 25463 62 4 5 282 1 0 165 2 0 58 9 0 7 0 10 262 0 1 166 0 4 68 0 2 153 1 0 310 0 1 113 0 4 6 2 0 136 chain 9396 chr4 191154276 + 112009344 112009539 L1PB1 5432 + 5236 5411 163574 43 2 1 21 21 10 15 3 1 5 1 0 16 2 0 22 1 0 21 1 0 13 1 0 7 chain 536086 chr4 191154276 + 112015810 112021932 L1PA4 6152 - 9 6152 3434 384 0 1 506 0 1 891 0 4 1094 0 2 560 0 1 182 1 0 159 0 1 2164 24 36 157 chain 25523 chr4 191154276 + 112025394 112025720 AluSq10 312 - 3 312 102125 126 22 5 178 chain 4129 chr4 191154276 + 112031944 112032010 MSTB1 431 - 347 415 205518 20 5 7 41 chain 65693 chr4 191154276 + 112040440 112041207 L1PA7 6471 + 5690 6459 50251 8 0 2 759 chain 5149 chr4 191154276 + 112041723 112041800 LTR73 568 - 487 566 193551 58 7 9 12 chain 5011 chr4 191154276 + 112042317 112042383 L1PA16 3655 - 64 127 195012 13 3 0 50 chain 42660 chr4 191154276 + 112042387 112042865 L1PA2 6032 - 4 485 65830 181 0 1 76 1 0 21 1 4 198 chain 551017 chr4 191154276 + 112068201 112074348 L1PA3long 6157 - 0 6147 1307 259 1 0 894 0 1 512 0 2 438 1 2 1655 0 4 1112 8 0 997 0 1 270 chain 7795 chr4 191154276 + 112082545 112082683 L1MA6 2487 - 222 357 172327 27 27 24 84 chain 506763 chr4 191154276 + 112084888 112091337 L1PA7 6471 + 0 6466 6417 133 38 39 234 1 3 289 21 19 273 1 0 261 2 1 625 12 11 126 42 31 211 12 13 371 0 1 224 0 1 119 0 1 68 0 1 41 0 4 101 0 1 265 1 2 80 7 11 23 1 3 20 0 1 293 4 5 26 2 1 77 2 0 203 0 1 460 2 0 5 1 3 127 0 2 5 0 1 133 2 0 367 10 11 383 1 0 95 0 3 142 0 1 22 0 3 305 0 5 21 1 2 148 1 0 9 chain 26498 chr4 191154276 + 112097875 112098190 AluYf4 310 + 0 310 98051 126 5 0 184 chain 38553 chr4 191154276 + 112114637 112115096 L1PA7 6471 + 5975 6433 71364 378 1 0 80 chain 54272 chr4 191154276 + 112116438 112117043 L1PA4 6152 - 1 606 56180 605 chain 21092 chr4 191154276 + 112117043 112117286 L1PA4 6152 + 5284 5528 123574 54 1 2 188 chain 12733 chr4 191154276 + 112167584 112167868 L1PB1 5432 + 5158 5420 149319 9 2 0 53 19 17 35 46 36 19 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 chain 349746 chr4 191154276 + 112168923 112172863 L1PA4 6152 - 0 6144 11615 6 3 0 1183 1 0 2608 0 2208 139 chain 24482 chr4 191154276 + 112182215 112182474 L1PA2 6032 - 3 262 107645 259 chain 65390 chr4 191154276 + 112212451 112213232 L1PA6 6164 - 8 788 50347 106 2 0 138 0 1 535 chain 155303 chr4 191154276 + 112213232 112215050 L1PA6 6164 + 3504 5380 23946 572 0 1 173 1 0 315 0 17 288 6 0 196 0 46 124 6 7 137 chain 144570 chr4 191154276 + 112236813 112238457 L1PA4 6152 - 1 1667 25386 17 2 0 301 3 0 184 0 13 806 4 0 265 0 18 62 chain 52871 chr4 191154276 + 112255898 112256491 L1PA3long 6157 + 5565 6157 57090 320 5 0 217 0 4 51 chain 545859 chr4 191154276 + 112258099 112264099 L1PA2 6032 + 1 6027 1966 375 3 0 331 0 7 621 0 1 502 1 19 1817 0 1 561 0 2 1789 chain 174335 chr4 191154276 + 112289684 112291679 L1PA4 6152 + 4129 6152 21557 994 0 1 180 0 4 121 4 20 16 0 1 535 1 2 138 0 5 6 chain 540043 chr4 191154276 + 112299059 112305225 L1PA4 6152 + 0 6151 2814 580 1 0 256 17 0 224 0 2 182 1 0 1940 0 1 593 1 0 97 0 2 758 2 1 1177 1 2 186 2 0 5 4 6 139 chain 54062 chr4 191154276 + 112310537 112311131 L1PA3long 6157 + 5558 6152 56314 594 chain 211510 chr4 191154276 + 112315858 112318172 L1PA3long 6157 + 3843 6157 18397 482 1 0 1827 0 1 4 chain 17780 chr4 191154276 + 112339717 112339916 L1PA2 6032 - 0 199 133476 199 chain 174106 chr4 191154276 + 112341796 112343752 L1PA4 6152 + 4195 6151 21583 1956 chain 31381 chr4 191154276 + 112351466 112351908 L1PA8 5853 - 16 458 81850 77 1 0 19 2 1 51 13 10 71 2 0 36 9 8 73 1 0 5 0 9 82 chain 184272 chr4 191154276 + 112359038 112361191 L1PA5 6144 - 0 2156 20562 135 6 14 12 16 11 1234 5 0 393 0 4 167 0 1 185 chain 342046 chr4 191154276 + 112379195 112382886 L1PA2 6032 + 2339 6031 11829 1458 0 1 2233 chain 13585 chr4 191154276 + 112408143 112408380 L1PA13 3608 + 1728 1963 146037 30 0 1 73 9 15 46 2 0 10 24 17 25 1 0 4 0 1 13 chain 34655 chr4 191154276 + 112410208 112410657 L1PA8A 6298 - 890 1341 76569 137 0 1 43 12 13 6 1 0 197 0 1 53 chain 59664 chr4 191154276 + 112410657 112411906 L1PA8A 6298 + 5423 6289 53011 60 2 0 6 1 2 6 0 1 4 1 0 37 384 0 29 0 2 29 4 5 29 21 6 28 0 1 15 0 11 116 9 6 332 0 4 29 14 15 93 chain 31215 chr4 191154276 + 112410800 112411133 L1HS 6032 + 5699 6032 82132 333 chain 227409 chr4 191154276 + 112453940 112456784 L1PA8 5853 - 4 2847 17457 34 0 1 53 4 3 17 2 1 52 1 0 8 1 0 69 3 1 48 1 0 39 1 3 200 4 2 31 4 0 215 10 15 46 0 2 21 0 4 537 3 1 69 8 9 34 1 0 89 1 0 57 1 0 129 0 2 1051 chain 11934 chr4 191154276 + 112459527 112459681 L1PA5 6144 + 5997 6144 152462 10 8 1 136 chain 2802 chr4 191154276 + 112463124 112463154 MER121 330 + 140 170 228714 30 chain 69119 chr4 191154276 + 112480072 112480971 L1P3 4156 - 19 1312 48753 21 1 0 11 2 0 113 3 5 161 22 9 38 0 13 25 0 368 313 0 24 183 0 3 6 chain 109133 chr4 191154276 + 112480977 112482332 L1PA7 6471 + 5122 6469 34408 5 0 3 204 1 0 287 1 0 88 7 8 148 1 0 38 4 0 227 1 0 329 2 0 5 2 0 5 chain 534432 chr4 191154276 + 112486301 112492401 L1PA5 6144 + 0 6142 3661 2395 4 11 104 0 1 1228 0 37 151 0 3 419 0 4 33 15 0 911 0 4 11 5 6 824 chain 14149 chr4 191154276 + 112496791 112497020 L1PA6 6164 - 2 218 144041 6 4 0 121 0 1 22 4 5 31 19 8 22 chain 14922 chr4 191154276 + 112534835 112535025 L1PA6 6164 + 5968 6159 141569 35 3 4 152 chain 498002 chr4 191154276 + 112543902 112550092 L1PA7 6471 - 1 6471 6954 192 1 3 651 0 2 340 0 1 332 1 0 172 0 3 96 0 4 61 0 1 136 0 4 177 0 5 90 0 1 327 5 10 282 0 7 49 0 1 20 1 0 17 3 2 125 1 280 126 3 2 128 0 1 114 0 4 64 19 0 468 0 1 274 0 3 145 3 0 393 1 2 140 0 4 798 9 0 149 42 28 31 8 8 196 chain 27519 chr4 191154276 + 112573880 112574252 MER4A1 472 - 0 387 94605 184 5 1 24 2 1 10 1 22 141 1 0 4 chain 2827 chr4 191154276 + 112634796 112634986 MER112 246 - 27 215 228279 29 142 140 19 chain 54210 chr4 191154276 + 112651792 112652403 L1PA4 6152 - 9 619 56221 141 8 7 462 chain 49656 chr4 191154276 + 112679875 112680420 L1PA4 6152 + 5593 6138 59265 545 chain 4691 chr4 191154276 + 112687608 112687681 L1PA15 4387 - 1220 1294 198626 54 6 7 13 chain 15066 chr4 191154276 + 112723750 112724069 THE1D 372 - 37 365 141120 90 10 23 5 3 0 25 6 1 10 10 15 56 42 43 16 3 0 26 1 0 10 0 2 6 chain 95704 chr4 191154276 + 112747261 112748526 HSMAR1 1287 - 0 1287 37896 219 1 2 11 12 0 304 0 18 34 0 3 86 2 1 278 1 4 153 0 11 38 2 1 124 chain 143867 chr4 191154276 + 112787118 112788852 L1PA6 6164 - 14 1749 25501 20 9 0 9 0 9 218 0 1 495 10 8 81 0 1 50 1 2 841 chain 7010 chr4 191154276 + 112795687 112795773 L1PA16 3655 - 80 166 177398 86 chain 563942 chr4 191154276 + 112815957 112821987 L1HS 6032 + 2 6032 241 147 1 3 5 2 0 5875 chain 166403 chr4 191154276 + 112835955 112838036 L1PA8 5853 - 0 2156 22470 91 3 2 7 0 17 34 26 24 70 2 0 46 1 0 253 0 38 185 0 2 50 1 29 302 0 1 255 2 1 387 0 8 31 0 1 7 14 1 314 chain 2906 chr4 191154276 + 112839079 112839113 LTR16A 446 - 97 132 226951 4 0 1 30 chain 4302 chr4 191154276 + 112868005 112868058 MLT2D 439 + 381 439 203190 10 0 5 43 chain 242447 chr4 191154276 + 112870372 112873239 L1PA7 6471 - 22 2911 16644 238 7 24 528 0 1 30 8 7 445 4 5 55 0 4 307 0 2 360 1 0 440 2 0 15 0 1 427 chain 5941 chr4 191154276 + 112884750 112884824 MER53 195 - 0 74 185774 74 chain 182801 chr4 191154276 + 112886708 112888682 L1PA2 6032 + 4055 6029 20701 1974 chain 54542 chr4 191154276 + 112890817 112891844 L1PB1 5432 + 4550 5422 56001 70 11 6 57 1 3 155 0 1 172 4 6 83 140 11 20 1 0 8 3 2 10 26 20 16 0 5 25 2 1 16 1 0 44 1 0 15 2 0 6 1 0 11 9 0 11 27 22 24 1 0 22 1 0 12 1 0 18 chain 402559 chr4 191154276 + 112892814 112898496 L1PB1 5432 - 41 5376 10011 21 1 0 24 2 0 14 8 5 19 19 8 4 1 0 15 1 0 44 19 17 33 33 40 9 1 0 24 1 0 6 4 5 50 18 18 218 15 5 180 4 0 9 5 6 131 1 0 4 0 1 266 1 0 245 316 0 51 6 5 172 21 19 120 3 1 87 0 1 686 3 0 197 0 1 106 4 0 30 7 0 646 0 4 131 1 9 282 11 12 8 16 0 7 1 0 45 1 6 93 1 0 194 0 3 300 0 4 51 0 1 84 0 3 138 0 2 70 1 0 98 0 3 244 chain 20366 chr4 191154276 + 112894331 112894580 AluSg7 307 - 51 307 126007 129 0 1 41 0 6 79 chain 60193 chr4 191154276 + 112946107 112946865 L1PA8 5853 + 5096 5853 52732 468 1 0 44 2 0 71 1 0 9 1 0 28 1 0 24 2 1 14 6 5 26 1 8 59 chain 31660 chr4 191154276 + 112984527 112985082 L1MA3 4352 + 3802 4332 81388 141 0 3 130 64 43 42 1 0 74 4 0 11 14 12 24 2 1 5 1 0 5 0 4 20 2 1 10 1 0 4 chain 9557 chr4 191154276 + 112986415 112986534 L1MA3 4352 + 3957 4076 162796 119 chain 97529 chr4 191154276 + 112990751 112991861 L1PA5 6144 + 5037 6141 37412 775 0 1 322 7 0 6 chain 27955 chr4 191154276 + 112993638 112994025 THE1D 372 - 0 372 93148 179 0 3 115 4 14 6 29 0 25 0 1 29 chain 552505 chr4 191154276 + 113007619 113013657 L1PA2 6032 + 0 6032 1131 376 3 0 60 1 0 1184 0 1 1520 1 0 545 1 0 1570 1 0 776 chain 274281 chr4 191154276 + 113082240 113085768 L1PA5 6144 + 2903 6144 14964 261 0 1 85 1 0 4 1 0 4 0 2 36 0 1 187 0 1 936 0 1 236 1 0 126 0 2 508 1 0 380 6 53 271 334 0 137 4 0 9 chain 15524 chr4 191154276 + 113085426 113085614 L1PA5 6144 + 5805 5993 139814 188 chain 41539 chr4 191154276 + 113085780 113086707 L1MA2 4263 + 3429 4053 67235 33 0 4 47 0 3 57 2 1 9 11 7 35 299 0 37 1 0 130 15 14 33 2 0 117 14 12 85 chain 2771 chr4 191154276 + 113100112 113100153 L1PA5 6144 + 5466 5510 229181 13 0 3 28 chain 16020 chr4 191154276 + 113100240 113100418 L1PA5 6144 - 956 1135 138306 9 0 1 169 chain 39982 chr4 191154276 + 113100421 113100867 L1PA5 6144 + 5691 6137 69341 446 chain 21548 chr4 191154276 + 113111551 113111870 AluSp 311 + 0 298 121972 19 20 12 89 14 0 130 3 4 44 chain 222263 chr4 191154276 + 113113504 113115923 L1PA3long 6157 - 0 2419 17742 2419 chain 239905 chr4 191154276 + 113128222 113131057 HERV9-int 5642 + 1028 4812 16783 79 3 4 16 6 7 22 1 5 85 1 0 267 0 3 666 0 8 280 1 0 540 7 942 504 1 0 356 chain 16324 chr4 191154276 + 113131509 113131694 LTR12_ 688 + 503 688 137427 185 chain 29747 chr4 191154276 + 113148535 113148852 AluYb9 318 - 1 318 85667 317 chain 26586 chr4 191154276 + 113176119 113176414 AluYa5 310 - 14 310 97707 94 0 1 201 chain 29778 chr4 191154276 + 113203118 113203487 THE1B 368 + 0 368 85547 172 1 0 196 chain 523936 chr4 191154276 + 113224931 113230823 L1PA5 6144 - 24 6139 4772 123 8 8 880 0 1 827 6 8 1103 1 0 789 0 4 2056 13 230 86 chain 97119 chr4 191154276 + 113240629 113242040 L1PB 1623 - 38 1416 37535 11 2 0 21 87 59 6 3 0 4 1 0 30 2 1 7 1 0 226 1 0 711 0 4 20 1 0 13 0 1 66 10 9 122 2 0 4 0 1 11 0 2 49 chain 384464 chr4 191154276 + 113282969 113288344 L1PB1 5432 + 26 5422 10631 125 7 0 7 6 13 61 5 5 39 2 3 21 12 12 275 0 4 132 23 25 18 1 0 619 13 17 131 0 33 52 7 8 91 9 11 221 0 5 34 15 6 485 24 20 67 4 5 249 5 0 7 0 10 551 1 3 165 5 0 56 0 2 111 7 9 103 5 7 589 3 0 30 7 8 62 2 12 54 2 7 20 5 0 82 3 0 178 0 3 214 1 2 8 4 1 24 1 0 6 1 0 10 25 19 47 2 1 16 1 0 44 1 0 15 2 0 6 16 6 18 3 1 5 1 0 9 7 5 9 1 0 15 1 0 22 1 0 12 1 0 18 chain 6527 chr4 191154276 + 113293775 113293993 L1MA8 2339 - 77 260 181035 5 1 0 24 15 13 22 21 15 19 3 0 37 2 1 7 20 0 14 12 10 16 chain 5364 chr4 191154276 + 113318573 113318643 MADE1 96 + 8 93 191381 37 0 15 33 chain 45984 chr4 191154276 + 113320750 113321312 L1PA8 5853 - 0 555 62057 93 1 0 19 2 1 51 1 0 7 1 0 74 2 0 44 1 0 266 chain 18741 chr4 191154276 + 113363073 113363430 THE1D 372 - 0 372 130852 134 16 32 13 0 2 6 22 19 57 55 55 54 chain 154422 chr4 191154276 + 113381117 113383430 L1PA15 4387 + 1113 3416 24054 130 168 167 110 3 0 274 0 1 4 2 0 67 22 20 329 2 0 72 5 8 7 3 0 7 10 11 373 6 6 29 4 2 133 0 1 286 11 12 6 2 0 41 0 1 4 1 0 11 6 0 7 1 7 177 chain 28678 chr4 191154276 + 113386259 113386632 MLT2A1 477 - 92 477 90421 79 5 11 18 0 1 103 1 5 25 0 1 142 chain 301260 chr4 191154276 + 113386633 113390270 HERVL-int 5654 - 1 3671 13359 71 0 25 92 2 1 35 13 16 46 0 3 1114 0 1 693 0 8 610 0 1 52 14 0 18 1 6 55 5 7 816 chain 20926 chr4 191154276 + 113390275 113390511 HERVL-int 5654 + 244 481 124195 91 0 1 145 chain 528816 chr4 191154276 + 113395755 113401851 L1PA5 6144 - 4 6141 4323 675 1 0 493 0 1 93 0 1 39 5 6 845 0 3 428 0 8 372 0 1 485 2 0 51 1 9 982 6 7 473 1 2 10 0 4 282 0 1 356 10 9 27 0 1 341 1 15 117 chain 165838 chr4 191154276 + 113404023 113405855 L1PA3long 6157 + 4307 6157 22537 999 0 1 355 0 15 223 1 0 80 0 2 32 0 1 142 chain 124331 chr4 191154276 + 113411252 113412784 THE1B-int 1605 - 0 1560 29589 759 0 2 236 2 0 5 0 2 144 0 25 289 0 1 97 chain 19277 chr4 191154276 + 113412829 113413160 THE1B 368 - 0 368 129298 49 5 13 19 1 6 38 39 49 18 1 0 109 8 23 44 chain 28013 chr4 191154276 + 113414925 113415228 AluYa5 310 + 0 301 92957 97 1 0 35 1 0 169 chain 194924 chr4 191154276 + 113417847 113420813 L1PA7 6471 - 2 2403 19589 8 5 0 513 0 1 138 282 0 185 0 3 150 0 5 101 4 5 354 21 22 157 1 2 20 0 2 15 0 1 107 0 4 97 0 1 7 1 0 228 0 1 61 297 0 35 6 5 173 chain 13060 chr4 191154276 + 113440458 113440688 L1PA8 5853 + 5638 5853 147993 37 5 4 7 0 1 13 15 0 40 3 1 19 1 0 36 0 7 28 2 0 16 2 0 6 chain 10656 chr4 191154276 + 113450000 113450113 AluYb8 318 - 0 113 157583 113 chain 20644 chr4 191154276 + 113475490 113475726 L1PA4 6152 + 5628 5882 125148 41 0 18 195 chain 89252 chr4 191154276 + 113486667 113487656 L1PA3long 6157 + 5161 6157 39908 408 1 2 219 0 6 361 chain 24258 chr4 191154276 + 113493318 113493628 L1PB1 5432 + 4077 4392 108902 292 5 10 13 chain 51420 chr4 191154276 + 113493628 113494321 L1PB1 5432 + 4393 5103 58022 88 6 0 150 4 0 72 0 2 105 1 2 21 0 6 49 1 3 92 4 14 16 0 6 84 chain 307744 chr4 191154276 + 113496453 113500000 L1P1 4361 + 1 3555 13100 264 2 1 148 29 28 32 5 6 69 1 0 1907 1 0 343 0 4 90 5 10 410 0 1 241 chain 232805 chr4 191154276 + 113500000 113502595 L1PA4 6152 + 3561 6152 17149 1186 6 2 1403 chain 19856 chr4 191154276 + 113503914 113504218 L1MA4 2864 - 273 576 127633 35 0 11 38 29 20 146 10 7 46 chain 7410 chr4 191154276 + 113514215 113514323 MLT1B 390 + 281 390 174705 18 10 11 80 chain 7092 chr4 191154276 + 113545242 113545320 LTR12C 1709 + 1293 1371 176820 78 chain 13561 chr4 191154276 + 113545930 113546141 L1MB8 1703 + 1180 1393 146127 28 20 26 141 4 0 18 chain 26914 chr4 191154276 + 113546461 113546767 AluY 311 + 1 308 96577 54 0 1 34 0 1 113 1 0 104 chain 5618 chr4 191154276 + 113591103 113591241 MER5A 189 - 17 181 188891 35 15 23 4 1 0 29 25 26 18 0 18 11 chain 25329 chr4 191154276 + 113608319 113608618 AluSp 311 - 3 300 103075 17 2 0 280 chain 22058 chr4 191154276 + 113634475 113634739 AluSp 311 + 32 296 119979 264 chain 20729 chr4 191154276 + 113647765 113648029 AluY 311 + 40 304 124859 92 0 1 9 4 1 7 0 3 84 2 1 66 chain 21828 chr4 191154276 + 113648868 113649157 AluSp 311 + 16 306 120905 116 2 0 57 13 16 101 chain 14297 chr4 191154276 + 113666452 113666687 L1MA3 4352 - 0 222 143569 21 3 0 3 1 0 13 1 0 27 1 0 5 2 1 22 2 0 25 3 0 5 2 1 99 chain 9429 chr4 191154276 + 113671554 113671686 Tigger3a 397 + 139 262 163418 76 11 1 17 0 1 28 chain 28844 chr4 191154276 + 113676509 113676927 LTR7B 505 - 10 505 89690 41 14 13 76 1 0 46 0 1 38 10 12 16 3 27 12 7 49 49 0 10 105 chain 7459 chr4 191154276 + 113676979 113677068 HY3 101 - 7 96 174403 89 chain 20894 chr4 191154276 + 113685107 113685364 AluSg7 307 - 17 273 124300 158 1 0 98 chain 30674 chr4 191154276 + 113746120 113746503 L1PA5 6144 + 5759 6143 83086 209 5 6 169 chain 10022 chr4 191154276 + 113752432 113752698 LTR12C 1709 + 772 1037 160475 61 126 6 60 0 119 19 chain 124471 chr4 191154276 + 113757554 113759182 THE1D-int 1627 + 0 1627 29551 37 1 0 730 5 5 21 1 0 93 0 1 80 6 0 68 6 4 7 0 2 105 2 3 265 1 2 15 1 5 184 chain 17240 chr4 191154276 + 113763599 113763890 MER1B 344 - 5 293 134955 50 30 36 37 6 0 114 5 6 12 4 0 33 chain 8427 chr4 191154276 + 113808380 113808604 MER47A 366 + 0 304 168701 11 15 0 21 53 162 6 7 0 24 7 0 80 chain 2603 chr4 191154276 + 113814645 113814707 MADE1 96 + 17 96 231661 15 1 17 20 10 11 16 chain 20830 chr4 191154276 + 113832381 113832667 AluY 311 + 0 271 124507 77 21 5 50 0 1 138 chain 20685 chr4 191154276 + 113845248 113845506 AluSg7 307 + 5 263 125019 126 0 1 17 7 6 108 chain 147731 chr4 191154276 + 113878169 113879804 SVA_D 2077 - 0 2077 24917 18 2 0 648 1 50 46 0 1 22 0 396 478 0 1 395 3 0 22 chain 15459 chr4 191154276 + 113893346 113893560 L1PA8 5853 - 0 210 140023 92 2 1 19 2 1 51 1 0 7 1 0 39 chain 22656 chr4 191154276 + 113898734 113899055 L1PA8 5853 - 0 315 117297 63 0 1 29 1 0 19 2 1 39 21 19 74 2 0 44 1 0 26 chain 24663 chr4 191154276 + 113905407 113905747 THE1B 368 - 11 368 106656 55 0 2 108 2 0 16 12 10 24 0 4 82 1 16 40 chain 7803 chr4 191154276 + 113906967 113907136 L1PB1 5432 + 5280 5427 172292 16 24 12 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 1 0 5 chain 2916 chr4 191154276 + 113910238 113910270 U2 167 - 135 167 226745 32 chain 67462 chr4 191154276 + 113915871 113916955 L1PA16 3655 - 36 1109 49466 16 5 0 7 29 12 5 3 0 8 0 3 144 8 7 101 1 0 26 6 0 85 8 7 169 0 4 12 0 3 24 0 2 42 1 3 12 6 5 24 4 11 191 5 8 10 18 17 51 23 24 40 chain 12505 chr4 191154276 + 113923184 113923325 L1PA3long 6157 - 2 143 150226 141 chain 38417 chr4 191154276 + 113923325 113923745 L1PA3long 6157 + 5604 6024 71555 420 chain 3305 chr4 191154276 + 113930556 113930610 DNA1_Mam 279 + 103 148 218894 38 9 0 7 chain 8620 chr4 191154276 + 114004242 114004335 L1PA3long 6157 - 0 93 167639 93 chain 38357 chr4 191154276 + 114097787 114098234 L1PA5 6144 - 0 446 71636 171 2 1 274 chain 102218 chr4 191154276 + 114105872 114107122 L1PA7 6471 - 7 1257 36213 232 0 3 299 11 3 298 5 8 48 1 2 5 1 0 28 0 1 240 0 1 82 chain 43518 chr4 191154276 + 114107122 114107625 L1P3 4156 + 862 1367 64783 293 0 2 210 chain 7476 chr4 191154276 + 114113233 114113325 L1PA8 5853 - 0 92 174297 92 chain 4458 chr4 191154276 + 114117771 114117952 AluJo 314 - 237 294 201249 13 124 0 44 chain 20255 chr4 191154276 + 114121958 114122194 L1PA6 6164 + 5920 6156 126362 236 chain 25615 chr4 191154276 + 114149369 114149864 L1PB1 5432 - 15 476 101647 13 1 0 12 1 0 22 1 0 24 3 1 13 8 5 11 10 2 14 4 0 20 1 0 59 2 1 52 77 65 147 chain 29313 chr4 191154276 + 114154279 114154590 AluYa5 310 - 0 310 87494 184 1 0 126 chain 35691 chr4 191154276 + 114165775 114166215 L1PA7 6471 - 1 444 75283 148 7 9 277 0 1 8 chain 288274 chr4 191154276 + 114187121 114190890 L1PA7 6471 - 7 6471 14144 155 0 1 148 0 1 328 300 4 129 0 1 329 0 1 1124 4 7 420 0 3 187 0 2980 234 0 1 411 chain 8117 chr4 191154276 + 114297156 114297283 MER85 139 - 0 139 170397 23 0 1 5 2 1 73 8 20 16 chain 4435 chr4 191154276 + 114298241 114298296 Tigger3b 1229 + 229 286 201532 28 0 2 27 chain 6052 chr4 191154276 + 114301339 114301411 MER41B 635 + 481 554 184795 26 0 1 46 chain 26869 chr4 191154276 + 114320812 114321165 THE1A 353 + 0 353 96746 47 0 1 46 1 0 17 0 2 6 11 9 225 chain 124013 chr4 191154276 + 114321165 114322738 THE1A-int 1579 + 0 1574 29698 97 6 0 405 2 1 523 0 1 484 10 17 46 chain 185491 chr4 191154276 + 114336151 114338569 L1PB1 5432 - 16 2417 20466 12 1 0 13 1 0 21 1 0 24 24 19 18 17 7 6 3 0 16 1 0 44 1 0 15 2 1 53 2 0 8 2 0 3 2 0 9 1 0 6 0 3 24 1 0 9 1 2 73 0 1 258 0 13 135 0 2 434 2 3 452 1 3 130 0 1 14 0 1 4 1 0 475 0 1 4 1 0 51 9 0 33 chain 13131 chr4 191154276 + 114341478 114341642 U1 164 + 0 164 147717 164 chain 549536 chr4 191154276 + 114345670 114351857 L1PA4 6152 - 1 6150 1512 4486 35 0 958 7 0 124 0 3 507 0 1 70 chain 22773 chr4 191154276 + 114387136 114387418 AluSp 311 + 11 287 116712 109 5 0 58 1 0 109 chain 11916 chr4 191154276 + 114409519 114409658 MER85 139 - 0 139 152530 139 chain 548875 chr4 191154276 + 114410294 114416323 L1PA2 6032 - 0 6032 1594 262 1 0 80 1 0 1157 0 1 1016 0 2 2472 0 3 781 10 9 249 chain 6278 chr4 191154276 + 114472667 114472856 MER3 215 + 13 200 182954 37 85 77 37 2 8 28 chain 5025 chr4 191154276 + 114479660 114479728 MER2B 336 + 202 265 194877 39 5 0 24 chain 16721 chr4 191154276 + 114524373 114524572 L1PA3long 6157 - 0 195 136338 12 0 3 125 7 0 55 chain 13524 chr4 191154276 + 114524572 114524719 L1PA3long 6157 + 5826 5973 146268 147 chain 14002 chr4 191154276 + 114640314 114640714 LTR54B 464 + 0 464 144570 98 65 130 21 0 10 39 124 113 53 chain 112724 chr4 191154276 + 114717095 114718399 SVA_B 1603 + 44 1597 33470 22 0 5 598 0 3 1 1 0 36 0 241 116 1 2 529 chain 3887 chr4 191154276 + 114763883 114763967 MLT2C2 476 - 248 331 209069 13 29 28 42 chain 559156 chr4 191154276 + 114773302 114779451 L1PA3long 6157 + 3 6157 411 1197 3 0 1963 0 2 23 0 1 847 0 3 355 0 1 1140 0 1 621 chain 3509 chr4 191154276 + 114784227 114784268 MLT2A1 477 + 436 477 215227 41 chain 23546 chr4 191154276 + 114791512 114791801 L1PA2 6032 - 0 261 112873 13 28 0 248 chain 27891 chr4 191154276 + 114810921 114811295 THE1C 375 - 0 373 93393 108 0 1 79 3 0 9 5 6 170 chain 7167 chr4 191154276 + 114811336 114811422 L1P2 5180 + 2 88 176281 86 chain 29426 chr4 191154276 + 114813377 114813684 AluYb8 318 + 0 307 86953 307 chain 3749 chr4 191154276 + 114822090 114822136 MADE1 96 + 50 96 211148 46 chain 4517 chr4 191154276 + 114827814 114827923 MIRb 242 + 32 143 200589 13 42 44 54 chain 31771 chr4 191154276 + 114845280 114845660 MLT2A1 477 - 92 477 81214 212 0 4 28 0 1 140 chain 457704 chr4 191154276 + 114845660 114851283 HERVL-int 5654 - 0 5654 8483 106 0 1 33 0 1 23 2 0 59 1 7 29 1 0 170 1 0 148 0 1 11 8 18 57 0 2 85 5 8 147 1 0 222 1 0 252 0 15 220 0 1 282 0 1 189 7 1 506 0 1 164 24 9 313 0 1 583 0 1 832 0 1 320 0 1 19 0 3 110 5 2 263 6 21 202 4 0 10 0 1 202 chain 30235 chr4 191154276 + 114851283 114851692 MLT2A1 477 - 0 477 84099 41 0 49 213 1 5 26 0 1 17 5 19 106 chain 49788 chr4 191154276 + 114851797 114852342 L1PA2 6032 + 5485 6028 59167 534 2 0 9 chain 57517 chr4 191154276 + 114858516 114859224 L1PA10 4194 + 3406 4117 54225 252 0 1 331 0 3 89 1 0 35 chain 90509 chr4 191154276 + 114860074 114861114 L1PA3long 6157 - 4 1036 39470 150 0 1 205 0 1 459 1 0 4 0 1 24 0 1 4 15 0 11 0 4 167 chain 34308 chr4 191154276 + 114870062 114870494 L1PA7 6471 + 6027 6461 77193 112 1 0 151 17 20 55 0 1 41 1 0 54 chain 4125 chr4 191154276 + 114875062 114875117 Kanga2_a 737 + 549 604 205593 55 chain 216433 chr4 191154276 + 114909060 114911478 L1P1 4361 + 1874 4271 18092 1152 21 1 1123 1 0 121 chain 33290 chr4 191154276 + 114925758 114926153 LTR12C 1709 + 1315 1709 78745 307 2 1 86 chain 510079 chr4 191154276 + 114928316 114934792 L1PA7 6471 - 2 6469 6157 10 2 0 320 6 2 127 7 9 373 13 19 250 0 1 335 11 4 69 0 2 114 16 17 96 0 1 48 0 4 252 4 11 242 16 19 1240 0 2 263 1 2 157 1 0 121 6 8 604 1 3 56 8 0 150 5 4 134 1 4 73 17 9 555 0 3 44 17 14 101 5 0 185 1 0 158 27 27 29 1 0 167 8 0 29 chain 22705 chr4 191154276 + 114937041 114937313 AluYc3 301 + 28 299 117055 85 1 2 158 2 0 26 chain 19458 chr4 191154276 + 114942350 114942620 Tigger3a 397 - 23 344 128795 4 1 0 231 14 66 20 chain 44816 chr4 191154276 + 114965535 114966060 LTR17 781 + 255 781 63273 71 0 1 454 chain 13302 chr4 191154276 + 114967815 114967999 HERV17-int 4347 + 12 191 146804 15 1 0 50 2 1 34 2 0 27 1 0 52 chain 376725 chr4 191154276 + 114967999 114972333 HERV17-int 4347 + 13 4347 10856 14 1 0 51 1 0 35 2 0 26 1 0 155 5 0 9 1 0 983 0 1 175 7 8 502 0 1 614 1 2 1183 0 2 169 0 5 399 chain 28511 chr4 191154276 + 114972646 114972972 LTR17 781 + 0 326 91140 326 chain 11211 chr4 191154276 + 114974444 114974616 L1PA13 3608 + 3338 3499 155383 53 1 0 5 2 0 48 8 4 18 1 0 26 3 0 7 chain 216387 chr4 191154276 + 114988724 114991182 L1PA5 6144 + 3683 6138 18093 1338 1 0 273 2 0 844 chain 39778 chr4 191154276 + 114996603 114997171 L1PA17 2846 + 2044 2622 69656 4 1 0 58 3 18 220 0 1 11 0 4 140 5 0 33 1 0 55 6 4 8 1 0 22 chain 20089 chr4 191154276 + 115005764 115006014 L1PA6 6164 + 5904 6156 126860 38 0 2 212 chain 33498 chr4 191154276 + 115061495 115061950 L1PB1 5432 - 329 945 78413 20 2 0 17 0 1 14 0 1 87 0 160 178 1 2 136 chain 58506 chr4 191154276 + 115067018 115068178 MER61-int 3695 - 2815 3694 53698 81 0 4 34 5 6 67 3 5 41 2 0 99 7 6 263 20 19 95 0 1 44 19 19 12 280 0 36 1 0 18 16 12 17 chain 116275 chr4 191154276 + 115068724 115070277 LTR12C 1709 - 0 1709 32350 84 1 0 390 18 11 15 24 0 76 0 47 249 1 0 35 0 119 193 3 0 19 1 0 7 2 0 83 0 43 42 4 5 49 26 11 231 chain 206819 chr4 191154276 + 115070594 115072861 L1PA3long 6157 - 2 2271 18730 1861 0 2 406 chain 7530 chr4 191154276 + 115076126 115076249 L1MC3 1789 - 572 697 173971 75 1 0 4 16 19 27 chain 126644 chr4 191154276 + 115089209 115090584 L1PA3long 6157 - 15 1390 28906 1375 chain 16418 chr4 191154276 + 115097438 115097781 THE1B 368 - 0 368 137158 39 18 19 5 2 0 54 73 83 33 13 29 106 chain 25368 chr4 191154276 + 115110764 115111138 THE1B 368 - 0 368 102843 118 39 36 12 0 1 5 3 0 19 0 1 4 2 0 172 chain 28224 chr4 191154276 + 115124404 115124706 AluYa5 310 - 8 310 92213 302 chain 13235 chr4 191154276 + 115128955 115129149 Tigger4 2445 - 135 325 147341 25 2 1 15 2 1 75 1 0 69 1 0 4 chain 10712 chr4 191154276 + 115141237 115141518 L1PB1 5432 - 41 293 157362 21 1 0 20 28 23 15 21 10 6 2 0 11 9 8 39 2 1 16 2 1 50 18 12 12 1 0 7 chain 14513 chr4 191154276 + 115152136 115152295 L1PA3long 6157 + 5998 6157 142847 159 chain 23464 chr4 191154276 + 115154949 115155210 AluY 311 + 36 297 113294 261 chain 136192 chr4 191154276 + 115182456 115184110 L1PA6 6164 + 4506 6162 26799 20 0 1 420 0 1 366 0 2 380 13 14 292 1 9 11 8 0 127 3 0 13 chain 501984 chr4 191154276 + 115208197 115214320 L1PA6 6164 + 0 6159 6729 237 0 2 23 3 2 194 0 1 59 0 2 47 1 0 103 0 2 93 0 1 140 0 4 552 1 0 62 0 2 398 4 6 112 6 7 87 7 10 184 13 0 184 0 1 680 0 2 20 0 1 303 0 1 160 0 1 108 1 2 170 1 0 174 0 10 113 1 0 53 0 1 48 0 4 100 0 3 112 0 1 90 0 3 451 0 1 185 0 4 115 0 1 365 5 4 358 chain 4161 chr4 191154276 + 115233908 115233961 LTR29 598 + 23 74 205081 45 2 0 6 chain 34685 chr4 191154276 + 115250658 115251056 L1PA7 6471 - 1 400 76645 114 0 1 284 chain 33190 chr4 191154276 + 115255367 115255739 L1PA4 6152 - 9 381 78904 372 chain 53720 chr4 191154276 + 115258097 115258747 L1PA7 6471 - 1 648 56529 13 0 5 132 1 0 183 0 1 62 8 0 251 chain 119500 chr4 191154276 + 115275416 115276973 THE1A-int 1579 - 0 1579 31216 327 1 4 417 0 1 30 5 6 100 24 33 15 7 8 162 0 2 357 6 11 106 chain 28171 chr4 191154276 + 115276973 115277328 THE1A 353 - 0 353 92399 155 1 0 88 1 0 110 chain 21615 chr4 191154276 + 115284507 115284936 L1PB1 5432 - 5 398 121709 5 1 0 4 1 0 14 2 1 12 1 0 21 1 0 22 2 0 16 1 0 5 2 0 18 17 7 6 3 0 15 5 4 40 1 0 16 2 1 52 2 0 9 5 1 11 1 0 9 1 0 19 18 16 69 chain 41755 chr4 191154276 + 115285048 115285516 L1PA5 6144 - 7 475 66952 468 chain 78438 chr4 191154276 + 115324625 115325494 L1PA4 6152 + 5281 6150 44299 869 chain 120556 chr4 191154276 + 115335892 115337411 THE1B-int 1605 + 13 1600 30852 419 9 32 11 11 44 491 5 6 161 0 1 240 0 10 172 chain 271248 chr4 191154276 + 115346354 115350282 L1PA10 4194 - 48 4017 15125 27 8 5 134 0 1 132 0 2 70 0 4 152 4 5 258 5 6 371 20 16 56 48 162 87 0 1 33 15 18 208 2 0 76 18 0 96 0 4 574 7 9 202 1 3 277 11 12 143 0 2 21 0 1 62 4 7 417 29 17 72 1 0 8 7 0 15 1 0 10 22 14 21 2 0 13 53 28 7 1 0 15 2 0 18 15 13 9 2 0 10 10 6 9 2 0 8 3 0 10 2 0 12 chain 27453 chr4 191154276 + 115357516 115358090 L1PB1 5432 - 14 537 94805 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 24 12 15 1 0 42 22 19 52 18 12 10 1 0 8 1 0 20 26 24 73 53 36 90 chain 45961 chr4 191154276 + 115375166 115375735 MER41A 554 - 0 554 62072 119 15 0 435 chain 46120 chr4 191154276 + 115402474 115403047 LTR12_ 688 - 0 688 61925 14 1 11 131 0 103 273 0 2 154 chain 3038 chr4 191154276 + 115412643 115412675 MSTC 436 + 197 229 224225 32 chain 10044 chr4 191154276 + 115414901 115415022 L1PA16 3655 + 3416 3537 160356 121 chain 6702 chr4 191154276 + 115435957 115436041 MLT1A0 366 + 227 312 179672 15 0 1 69 chain 134652 chr4 191154276 + 115437028 115438572 SVA_D 2077 + 6 2076 27083 27 10 9 762 0 40 66 2 0 6 23 511 17 0 1 631 chain 3220 chr4 191154276 + 115438572 115438611 MER73 639 + 598 637 220576 39 chain 25615 chr4 191154276 + 115440152 115440453 AluSp 311 + 8 307 101645 278 2 0 21 chain 14281 chr4 191154276 + 115441210 115441486 L1PB1 5432 - 10 263 143615 18 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 12 19 10 8 3 0 12 10 9 39 1 0 15 2 1 51 chain 204164 chr4 191154276 + 115443723 115447815 L1PA8 5853 - 0 2695 18913 91 3 2 19 2 1 41 7 6 12 7 6 68 1 19 24 1 0 242 1 2 311 2 0 223 0 1 281 3 5 473 1497 82 73 0 1 166 0 2 544 chain 92223 chr4 191154276 + 115445535 115446570 L1PA4 6152 + 5109 6143 38896 870 1 0 164 chain 42997 chr4 191154276 + 115450926 115451564 THE1C-int 1605 + 17 614 65417 128 54 0 182 0 6 99 23 30 152 chain 6775 chr4 191154276 + 115475057 115475169 MER51B 395 - 14 110 179145 65 17 1 30 chain 4742 chr4 191154276 + 115477977 115478124 MER51-int 1546 - 1387 1509 197998 10 2 1 47 54 34 15 4 0 15 chain 32685 chr4 191154276 + 115483279 115483725 MER4A1 472 - 2 472 79714 170 28 52 248 chain 24781 chr4 191154276 + 115490395 115490698 AluY 311 + 3 297 105985 94 21 12 188 chain 13610 chr4 191154276 + 115496948 115497219 THE1C 375 - 113 375 145935 76 2 3 52 82 72 59 chain 38814 chr4 191154276 + 115509346 115509857 HERV1_LTRc 486 - 0 486 70999 192 9 0 91 0 1 16 8 9 82 13 0 6 5 0 89 chain 36432 chr4 191154276 + 115517000 115517486 HERV1_LTRc 486 - 8 486 74326 184 9 0 67 0 2 15 7 8 16 8 9 86 3 0 91 chain 76289 chr4 191154276 + 115537018 115537897 L1P1 4361 - 3482 4360 45314 29 1 0 849 chain 72827 chr4 191154276 + 115543112 115543914 L1PA3long 6157 - 0 819 47114 532 0 17 270 chain 11461 chr4 191154276 + 115571477 115571615 MER85 139 - 0 139 154468 68 0 1 70 chain 192153 chr4 191154276 + 115591215 115593929 L1PA8A 6298 + 3821 6288 19854 48 0 1 89 260 10 70 1 2 35 2 1 30 0 1 341 13 18 109 1 0 43 0 2 52 0 2 20 0 1 193 20 1 459 1 3 35 0 1 98 2 5 227 3 4 172 10 11 71 0 2 90 0 1 86 1 0 28 4 5 100 chain 22103 chr4 191154276 + 115591353 115591611 AluY 311 + 48 307 119766 84 0 1 174 chain 24806 chr4 191154276 + 115624609 115624870 AluYb9 318 - 2 263 105858 261 chain 4937 chr4 191154276 + 115625187 115625276 L1MC1 2226 + 1924 2009 195826 42 1 2 12 3 0 13 2 0 16 chain 46570 chr4 191154276 + 115630592 115631152 L1PA7 6471 + 5908 6467 61548 102 2 1 456 chain 7407 chr4 191154276 + 115646421 115646534 MER52C 1267 - 213 326 174731 20 17 0 39 0 17 37 chain 317460 chr4 191154276 + 115668811 115672776 HERVL-int 5654 + 1 3988 12703 386 9 1 28 0 2 419 0 1 377 4 0 388 1 5 111 0 1 212 8 1 188 5 0 66 0 1 36 14 8 54 0 1 52 2 1 9 0 8 305 0 2 137 11 10 14 8 19 202 0 1 250 0 2 508 4 24 157 chain 7820 chr4 191154276 + 115672795 115672931 MLT2A1 477 + 306 477 172188 73 26 61 37 chain 24122 chr4 191154276 + 115675382 115675667 AluYf4 310 + 11 294 109635 251 8 6 26 chain 36842 chr4 191154276 + 115690344 115690823 MLT2A2 560 + 0 503 73745 180 1 0 154 1 3 69 0 11 67 0 12 7 chain 28712 chr4 191154276 + 115752203 115752507 AluYb8 318 - 14 318 90285 304 chain 122140 chr4 191154276 + 115758488 115759962 L1PA7 6471 + 4966 6449 30332 19 1 0 569 0 4 56 0 3 92 4 5 346 0 1 252 1 0 6 6 8 122 chain 178286 chr4 191154276 + 115813958 115816142 L1PA8A 6298 - 6 2203 21139 24 1 2 79 1 8 679 0 4 215 0 1 60 0 1 400 1 0 190 0 1 124 1 0 409 chain 71786 chr4 191154276 + 115816142 115817105 L1PA8A 6298 + 3175 4086 47533 131 0 1 61 1 0 31 1 0 19 0 4 279 2 1 124 0 1 42 1 3 90 58 1 123 chain 17879 chr4 191154276 + 115839511 115839711 L1PA2 6032 + 5832 6032 133162 200 chain 10162 chr4 191154276 + 115839750 115839957 MER101B 537 + 174 379 159792 6 5 0 30 31 24 37 0 1 12 18 27 68 chain 22099 chr4 191154276 + 115855463 115855738 AluY 311 + 38 311 119786 88 0 1 25 3 0 159 chain 11804 chr4 191154276 + 115879410 115879555 THE1B-int 1605 - 1244 1390 153021 81 0 1 64 chain 6078 chr4 191154276 + 115886009 115886099 L1MB1 2102 - 98 186 184591 64 11 9 15 chain 21573 chr4 191154276 + 115890263 115890498 AluYa5 310 + 76 310 121872 56 1 0 178 chain 45317 chr4 191154276 + 115923240 115923799 L1PA8 5853 - 580 1146 62697 189 0 2 73 0 2 79 0 1 185 0 2 33 chain 42988 chr4 191154276 + 115923811 115924401 L1PA8 5853 + 5271 5853 65428 293 1 0 49 2 0 65 29 26 36 2 1 19 2 1 92 chain 33215 chr4 191154276 + 115929278 115929653 L1P1 4361 - 2136 2517 78855 243 0 6 132 chain 199441 chr4 191154276 + 115929654 115931852 L1PA3long 6157 + 3956 6157 19249 119 0 3 2079 chain 63059 chr4 191154276 + 115941628 115944697 L1PB1 5432 + 4384 5420 51426 174 8 0 70 3 0 10 0 1 61 3 4 235 0 2 61 1 0 4 0 1 42 4 6 48 1798 109 7 1 0 18 5 4 40 1 0 15 14 1 30 2 0 5 1 0 14 2 0 24 1 0 17 316 0 4 1 0 29 chain 66541 chr4 191154276 + 115982106 115982955 L1PA7 6471 + 5590 6466 49850 4 0 1 25 1 0 4 0 1 160 1 47 481 0 1 43 18 0 102 3 0 7 chain 28668 chr4 191154276 + 115988902 115989219 L1PA5 6144 - 1 318 90457 317 chain 5003 chr4 191154276 + 115999580 115999756 MST-int 1221 + 22 174 195116 12 1 0 7 8 5 14 40 28 9 2 0 7 2 0 8 0 5 6 10 3 29 2 0 19 chain 15735 chr4 191154276 + 115999764 115999974 AluSg7 307 + 50 259 139158 82 2 0 5 5 6 116 chain 23979 chr4 191154276 + 116014357 116014647 AluY 311 + 8 299 110448 123 1 2 166 chain 25650 chr4 191154276 + 116060675 116061039 THE1C 375 + 0 364 101496 138 1 5 36 22 19 152 1 0 14 chain 19315 chr4 191154276 + 116065576 116065818 AluSp 311 + 0 239 129196 21 1 0 111 2 0 107 chain 37714 chr4 191154276 + 116068002 116068418 L1PA2 6032 + 5616 6032 72536 416 chain 496271 chr4 191154276 + 116093531 116099029 L1PA3long 6157 + 0 6152 7053 94 0 526 161 0 128 1781 1 0 1625 0 1 1836 chain 109412 chr4 191154276 + 116099774 116101136 LTR12C 1709 - 0 1709 34340 84 1 0 184 0 1 158 1 0 20 0 2 32 0 4 64 0 207 39 0 2 58 0 118 244 4 5 26 0 1 62 0 11 83 0 1 21 0 1 281 chain 382317 chr4 191154276 + 116114926 116120302 L1PB1 5432 - 24 5378 10684 4 1 0 13 1 0 21 1 0 24 60 46 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 7 0 1 25 1 0 6 43 5 9 0 4 72 0 1 12 1 0 106 0 1 6 14 13 64 3 11 172 4 0 10 6 7 45 1 0 58 0 4 16 0 1 84 0 1 404 1 11 222 32 36 481 4 5 405 1 0 95 40 43 184 0 1 19 0 1 950 0 4 77 0 3 17 35 35 11 14 0 7 1 0 24 9 23 115 0 1 476 62 64 74 20 23 198 1 0 343 chain 120655 chr4 191154276 + 116120488 116121916 LTR12C 1709 - 0 1709 30814 194 0 4 283 0 4 106 9 6 126 0 278 494 8 6 208 chain 39088 chr4 191154276 + 116131209 116131661 L1PA6 6164 + 5697 6149 70621 452 chain 34481 chr4 191154276 + 116143344 116143815 MER4A1 472 + 0 449 76940 227 21 0 172 7 6 44 chain 28250 chr4 191154276 + 116198111 116198408 AluYa5 310 + 13 310 92108 297 chain 28134 chr4 191154276 + 116203427 116203746 L1PA5 6144 + 5813 6132 92524 319 chain 24949 chr4 191154276 + 116225400 116225692 L1PA4 6152 - 0 300 105063 5 2 0 58 0 10 227 chain 95947 chr4 191154276 + 116257255 116258366 L1PA4 6152 - 9 1121 37835 414 0 1 356 8 7 64 1 2 268 chain 73268 chr4 191154276 + 116258366 116259182 L1PA4 6152 + 4208 5028 46717 148 0 4 668 chain 4396 chr4 191154276 + 116260641 116260694 MER76 683 - 57 110 201974 53 chain 6561 chr4 191154276 + 116270712 116270794 L1MB3 1562 - 220 303 180775 21 0 1 61 chain 493689 chr4 191154276 + 116308105 116314476 L1PA7 6471 + 0 6470 7190 405 2 3 90 13 19 6 6 0 407 0 1 297 12 13 4 1 0 97 0 1 8 5 4 64 0 1 337 1 3 193 0 3 397 1 0 5 0 1 280 0 2 53 3 1 434 7 0 407 3 0 293 0 1 177 0 3 627 13 12 192 0 84 15 4 6 294 1 0 297 6 7 80 1 0 160 2 0 26 0 11 72 1 3 241 1 2 184 0 1 146 chain 6075 chr4 191154276 + 116350170 116350242 MLT2A2 560 + 2 74 184617 72 chain 52905 chr4 191154276 + 116362443 116363165 MER11C 1089 - 33 758 57078 153 1 0 165 0 1 38 1 0 5 0 4 96 61 62 146 1 0 55 chain 505472 chr4 191154276 + 116367791 116374000 L1PA6 6164 - 4 6164 6497 7 7 0 160 1 0 663 8 12 83 0 2 123 9 6 313 5 6 274 0 4 138 0 4 357 7 12 291 0 4 178 1 0 345 10 3 53 0 2 54 0 6 8 0 1 133 68 0 83 1 2 879 1 0 14 0 4 249 2 0 433 1 0 627 0 1 101 5 7 44 13 14 460 chain 118605 chr4 191154276 + 116379413 116381091 HERVL-int 5654 - 3698 5654 31580 194 1 0 40 1 24 580 1 0 171 192 449 498 chain 31439 chr4 191154276 + 116381236 116381634 MLT2A1 477 - 79 477 81751 143 0 1 41 0 1 7 0 1 34 4 1 169 chain 42955 chr4 191154276 + 116385979 116386470 L1PA6 6164 - 2 493 65467 491 chain 2960 chr4 191154276 + 116387544 116387592 MLT1A0 366 + 25 74 225895 24 4 5 20 chain 18353 chr4 191154276 + 116393637 116393959 THE1D 372 + 0 324 131930 41 13 1 81 50 66 12 2 0 123 chain 27578 chr4 191154276 + 116396122 116396484 L1PA7 6471 - 20 384 94409 126 18 19 174 0 1 44 chain 7560 chr4 191154276 + 116413612 116413701 L1PBa 3878 + 3232 3323 173807 70 0 2 19 chain 432235 chr4 191154276 + 116440240 116446275 L1PA8 5853 - 0 5803 9257 90 1 0 22 2 1 19 8 0 33 1 0 6 1 0 73 3 1 163 1 2 259 16 30 145 2 0 91 4 3 180 7 8 16 5 4 210 2 0 222 10 18 42 0 1 153 0 4 50 13 15 25 12 12 312 2 3 380 1 0 133 7 6 31 10 11 86 7 8 91 7 8 97 3 5 46 2 1 54 1 3 122 9 10 383 0 1 4 1 2 11 6 10 118 1 2 26 0 4 271 3 4 159 0 4 9 251 0 390 1 2 241 0 1 239 6 9 166 5 6 177 1 8 147 0 15 31 52 13 13 1 0 10 2 0 22 chain 191341 chr4 191154276 + 116465677 116468720 MER4-int 2692 - 0 2682 19927 6 1 0 389 6 4 9 1 3 88 72 5 46 1 0 18 0 2 7 9 7 233 16 10 4 0 1 27 0 25 30 1 0 28 0 1 201 7 11 19 12 13 243 0 1 65 7 10 12 0 1 254 0 1 19 322 0 8 6 0 180 0 1 19 0 3 6 1 0 23 1 0 37 0 1 24 0 1 295 0 1 47 0 8 119 0 2 9 4 1 14 14 9 55 2 0 26 chain 69660 chr4 191154276 + 116507336 116508332 L1PA8 5853 - 859 1814 48544 17 1 0 176 2 1 490 28 12 36 3 4 42 33 0 47 1 2 90 0 4 15 0 4 15 chain 62950 chr4 191154276 + 116508337 116509244 L1PA8 5853 + 4962 5853 51468 48 2 0 428 6 5 121 1 0 46 9 7 41 5 0 19 21 11 7 0 7 38 2 1 15 6 5 92 chain 74686 chr4 191154276 + 116513408 116514408 MER11A 1151 + 0 1151 46167 45 11 110 136 0 2 33 0 2 210 0 1 21 1 0 76 1 0 37 5 8 61 0 4 62 1 28 14 1 9 58 0 1 47 1 3 108 0 4 71 chain 40984 chr4 191154276 + 116560125 116560674 MLT2A2 560 + 0 560 67930 66 0 1 30 2 0 86 0 1 201 1 0 10 8 19 75 0 1 70 chain 264073 chr4 191154276 + 116572954 116576195 L1P2 5180 - 638 3901 15480 174 7 11 320 0 3 800 10 14 37 1 0 307 2 1 513 0 2 26 14 7 138 4 5 726 1 0 78 11 29 72 chain 36731 chr4 191154276 + 116576195 116576639 L1PA6 6164 + 5716 6162 73912 299 0 1 19 0 1 126 chain 6359 chr4 191154276 + 116599331 116599509 LTR12C 1709 - 658 836 182320 22 78 0 41 1 79 36 chain 223878 chr4 191154276 + 116626155 116629078 L1PA8 5853 - 4 2850 17662 86 1 0 10 0 17 48 7 6 74 2 0 46 2 1 45 0 1 119 0 2 144 100 0 159 1 0 61 0 1 10 0 1 9 6 8 5 0 1 170 0 1 227 4 9 417 0 1 112 0 4 34 0 1 320 0 3 28 10 0 47 0 1 460 1 0 152 1 0 5 chain 28749 chr4 191154276 + 116630692 116631001 AluYg6 310 - 1 310 90131 309 chain 66399 chr4 191154276 + 116668332 116669104 L1PA4 6152 + 5342 6118 49913 696 0 1 7 8 2 51 0 9 10 chain 22391 chr4 191154276 + 116669851 116670142 L1PA7 6471 - 3 293 118530 7 4 0 144 0 2 5 3 4 128 chain 39006 chr4 191154276 + 116687834 116688681 MLT2A2 560 + 0 552 70736 20 7 8 126 329 18 31 0 1 268 0 16 17 3 1 46 chain 164829 chr4 191154276 + 116695295 116697141 L1PA4 6152 - 0 1849 22671 6 0 5 139 2 1 1372 1 0 326 chain 12411 chr4 191154276 + 116697153 116697294 L1PA4 6152 + 4206 4347 150591 141 chain 18965 chr4 191154276 + 116716533 116716924 L1PB1 5432 - 12 369 130192 16 1 0 13 1 0 21 1 0 24 2 0 6 16 13 30 14 1 16 6 5 38 1 0 12 6 5 51 2 0 11 6 2 10 1 0 8 1 0 21 3 0 12 1 2 40 chain 37317 chr4 191154276 + 116729824 116730396 L1MA1 4479 + 3421 3981 73064 95 1 0 4 9 8 187 0 1 4 2 0 13 8 6 16 1 0 71 1 0 20 2 0 16 1 0 22 0 1 62 9 5 7 0 1 21 chain 529855 chr4 191154276 + 116732836 116738970 L1PA5 6144 + 0 6134 4206 1758 0 1 604 1 2 1986 0 2 269 1 0 672 0 3 741 8 2 94 chain 19621 chr4 191154276 + 116739821 116740053 AluY 311 + 59 288 128331 59 3 0 170 chain 15625 chr4 191154276 + 116751572 116751759 L1PA8A 6298 - 9 197 139506 123 0 1 64 chain 51613 chr4 191154276 + 116751771 116752418 L1PA8A 6298 + 5442 6090 57883 47 3 2 17 7 8 38 0 1 535 chain 510734 chr4 191154276 + 116755119 116761539 L1PA7 6471 + 3 6462 6094 399 2 4 203 1 0 458 0 12 164 0 9 491 10 12 4 0 1 760 0 2 81 13 14 15 4 0 340 0 2 449 0 1 411 0 1 645 4 8 717 5 6 390 0 4 15 1 0 149 0 2 98 0 1 591 chain 11705 chr4 191154276 + 116799810 116799943 L1PA4 6152 + 6018 6151 153443 133 chain 145558 chr4 191154276 + 116821229 116822972 L1PA5 6144 + 2512 4302 25245 218 0 5 244 0 1 44 7 48 103 0 1 428 8 7 71 3 0 308 0 3 309 chain 19735 chr4 191154276 + 116822973 116823190 L1PA5 6144 + 4302 4519 127996 217 chain 45769 chr4 191154276 + 116823305 116823844 L1PA5 6144 + 4519 5059 62258 516 0 1 23 chain 80564 chr4 191154276 + 116823853 116824789 L1PA5 6144 + 5059 6001 43364 925 0 6 11 chain 10672 chr4 191154276 + 116824795 116824922 L1PA5 6144 + 6001 6128 157517 127 chain 37563 chr4 191154276 + 116871542 116872015 LTR2B 499 + 9 499 72735 5 1 0 57 1 0 34 0 19 375 chain 106724 chr4 191154276 + 116873230 116874566 Harlequin-int 5206 + 126 2255 35055 8 0 1 12 2 0 78 0 5 76 1 3 49 0 5 122 3 0 401 0 778 14 0 1 160 1 0 5 0 1 116 0 6 288 chain 35939 chr4 191154276 + 116877205 116877681 LTR2B 499 + 0 499 74970 12 0 1 58 2 1 31 2 21 194 1 5 176 chain 3982 chr4 191154276 + 116884059 116884171 L1P4 1494 - 1306 1412 207649 22 22 21 13 9 8 32 3 0 3 1 0 7 chain 19116 chr4 191154276 + 116896532 116896790 LTR8 732 - 474 732 129777 62 8 9 51 1 0 136 chain 31026 chr4 191154276 + 116896860 116897262 LTR7 482 - 5 482 82471 158 0 5 19 0 31 39 0 1 109 8 46 69 chain 286145 chr4 191154276 + 116898516 116902030 HERVH-int 3825 - 0 3825 14277 103 0 9 113 0 2 260 8 218 39 9 11 772 0 1 287 0 4 290 4 31 456 15 0 72 0 1 377 1 0 9 55 96 18 1 0 25 0 32 10 4 0 7 17 15 21 0 1 4 1 0 11 1 0 197 1 0 110 0 11 122 4 0 90 chain 24649 chr4 191154276 + 116902037 116902365 LTR7 482 - 5 367 106722 169 0 1 11 6 7 11 5 36 17 0 1 109 chain 14062 chr4 191154276 + 116918395 116918555 L1PA4 6152 + 5992 6152 144345 160 chain 15028 chr4 191154276 + 116918850 116919084 MER50 708 - 490 708 141242 28 0 3 24 10 4 53 0 1 47 6 0 10 8 0 48 chain 6086 chr4 191154276 + 116924200 116924372 THE1D 372 - 207 372 184535 67 90 83 15 chain 58744 chr4 191154276 + 116934947 116935637 L1PA5 6144 - 2 691 53553 153 1 0 536 chain 26451 chr4 191154276 + 116965728 116966081 THE1C 375 - 11 359 98234 15 1 0 171 1 0 59 3 0 103 chain 52687 chr4 191154276 + 116989440 116990487 L1PBa 3878 + 2583 3325 57195 25 3 0 99 0 1 4 4 6 71 308 3 197 3 5 49 5 6 171 3 0 105 chain 184081 chr4 191154276 + 117000146 117002385 L1PA6 6164 - 3 2713 20583 34 1 2 15 0 4 523 41 502 278 0 2 619 0 1 158 7 8 441 0 1 122 chain 26157 chr4 191154276 + 117020262 117020614 THE1A 353 + 2 353 99380 11 2 0 10 1 2 22 0 1 46 1 0 259 chain 6826 chr4 191154276 + 117053135 117053301 THE1B 368 - 172 368 178748 18 1 6 18 13 34 52 31 37 17 2 0 14 chain 22593 chr4 191154276 + 117099285 117099566 AluY 311 + 18 299 117612 114 2 0 69 0 1 68 0 1 28 chain 147547 chr4 191154276 + 117125009 117126599 L1HS 6032 - 0 1589 24953 262 1 0 1327 chain 84506 chr4 191154276 + 117126599 117127505 L1HS 6032 + 3531 4437 41642 906 chain 24511 chr4 191154276 + 117153024 117153310 L1PA4 6152 - 1 289 107487 91 0 1 47 3 4 145 chain 16275 chr4 191154276 + 117165833 117166093 THE1C 375 + 110 368 137540 15 3 0 58 1 2 19 29 30 116 1 0 18 chain 535592 chr4 191154276 + 117173076 117179185 L1PA4 6152 - 9 6127 3503 835 0 4 1788 0 1 248 0 2 134 3 0 1285 0 5 1262 0 4 8 4 0 542 chain 75561 chr4 191154276 + 117181592 117182675 MER11A 1151 + 0 1147 45740 59 0 99 38 4 1 6 0 3 88 4 0 149 0 1 70 1 0 24 5 6 138 0 1 127 0 26 26 43 0 22 18 0 36 0 1 60 6 7 159 chain 2402 chr4 191154276 + 117182336 117182365 MER11A 1151 + 791 820 234201 29 chain 8461 chr4 191154276 + 117183672 117183808 L1PA16 3655 + 3125 3250 168508 79 1 0 30 15 5 11 chain 242405 chr4 191154276 + 117184287 117187545 HERVL-int 5654 + 0 5654 16649 294 0 1 147 0 2 143 0 1 67 2 3 179 0 1 154 4 5 16 0 1 579 1 0 84 30 19 15 0 1 66 15 24 144 18 2407 69 22 21 42 0 1 307 0 1 32 5 6 384 0 1 32 0 1 15 3 0 389 chain 9449 chr4 191154276 + 117242978 117243164 L1PB1 5432 + 5237 5404 163315 43 1 0 16 1 0 4 2 0 13 30 19 14 2 0 24 1 0 21 1 0 13 chain 29569 chr4 191154276 + 117251486 117251796 AluYa5 310 - 0 310 86331 310 chain 86166 chr4 191154276 + 117290906 117292257 L1PB1 5432 - 40 1401 41089 22 1 0 24 1 0 5 93 83 22 1 0 15 2 1 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 20 60 91 18 5 17 23 8 2 324 11 7 168 2 1 283 0 1 9 1 0 139 chain 43366 chr4 191154276 + 117303977 117304523 MER41A 554 + 0 554 64974 405 0 4 15 1 5 125 chain 539351 chr4 191154276 + 117326854 117332879 L1PA3long 6157 + 0 6152 2920 152 11 12 540 7 0 64 8 136 2242 0 1 83 0 4 469 0 1 1596 1 0 852 chain 30836 chr4 191154276 + 117332889 117333276 L1PA7 6471 + 6086 6465 82794 153 3 2 65 0 1 8 2 0 139 6 0 11 chain 6508 chr4 191154276 + 117345198 117345279 LTR59 565 + 0 81 181177 81 chain 61551 chr4 191154276 + 117346266 117346953 L1PA3long 6157 - 0 684 52091 15 3 0 669 chain 88931 chr4 191154276 + 117355097 117356224 L1PA8 5853 - 1058 2182 40032 326 0 1 103 2 1 80 6 0 291 0 2 118 0 1 201 chain 82228 chr4 191154276 + 117356224 117357289 L1PA8 5853 + 4796 5853 42594 298 1 0 470 1 0 44 2 0 70 29 27 37 2 1 17 2 1 92 chain 29674 chr4 191154276 + 117360962 117361318 L1PA7 6471 + 6111 6468 85919 234 0 1 122 chain 51143 chr4 191154276 + 117361971 117362543 L1PA4 6152 - 1362 1938 58172 293 0 4 279 chain 122548 chr4 191154276 + 117362543 117363917 L1PA4 6152 + 4784 6151 30208 1213 7 0 154 chain 20605 chr4 191154276 + 117404633 117404880 AluSc5 308 + 37 284 125278 247 chain 25148 chr4 191154276 + 117420644 117420911 AluY 311 + 43 311 104006 89 0 1 178 chain 9362 chr4 191154276 + 117433249 117433351 L1PA2 6032 + 5930 6032 163742 102 chain 10742 chr4 191154276 + 117435641 117435875 MER41-int 2638 - 1499 1733 157239 63 62 65 30 12 9 67 chain 16180 chr4 191154276 + 117438476 117438838 THE1B 368 - 0 368 137817 40 23 22 63 60 66 61 40 41 75 chain 16182 chr4 191154276 + 117438843 117439061 THE1B-int 1605 - 5 298 137815 103 0 76 73 5 4 37 chain 74070 chr4 191154276 + 117478999 117479924 L1P3 4156 - 17 951 46476 26 1 0 6 2 0 158 0 3 112 2 1 253 0 1 53 0 6 26 2 1 76 1 5 207 chain 66317 chr4 191154276 + 117479940 117480902 L1PA7 6471 + 5583 6462 49938 39 3 1 188 81 5 151 4 0 250 3 2 86 19 19 138 chain 26879 chr4 191154276 + 117493727 117494076 THE1B 368 - 0 364 96700 303 6 21 40 chain 15562 chr4 191154276 + 117503751 117503927 L1PA4 6152 - 9 185 139696 176 chain 47704 chr4 191154276 + 117527252 117527841 LTR10C 591 - 0 591 60692 79 0 2 510 chain 38518 chr4 191154276 + 117540684 117541146 LTR2 463 + 0 463 71412 146 0 1 316 chain 3320 chr4 191154276 + 117568645 117568683 tRNA-Ile-ATA 38 + 0 38 218603 38 chain 18974 chr4 191154276 + 117570359 117570618 MLT2A1 477 + 181 477 130174 22 0 1 168 4 0 11 0 2 10 7 45 37 chain 273516 chr4 191154276 + 117578737 117582531 L1PA8 5853 + 1486 5853 14997 62 0 1 6 1 0 12 0 1 285 0 1 50 1 3 45 8 635 13 7 8 89 0 1 267 80 17 108 0 1 163 0 3 48 17 21 118 0 1 891 4 3 175 0 1 26 1 0 22 4 2 275 8 7 239 4 1 34 7 8 4 1 0 252 0 2 29 0 6 142 1 0 44 2 0 71 1 0 4 6 5 52 3 2 15 11 10 86 chain 9397 chr4 191154276 + 117602021 117602257 L1PB1 5432 + 5146 5375 163569 10 2 0 3 2 0 9 2 0 34 11 34 39 4 6 15 23 12 16 14 3 5 1 0 14 2 0 24 1 0 5 chain 144771 chr4 191154276 + 117607535 117609102 L1PA2 6032 + 4459 6026 25358 1567 chain 4020 chr4 191154276 + 117609168 117609213 MER61A 341 - 189 234 207082 45 chain 3837 chr4 191154276 + 117610680 117610725 MADE1 96 - 1 46 209825 45 chain 7028 chr4 191154276 + 117692013 117692097 L1P4 1494 + 634 718 177266 84 chain 535889 chr4 191154276 + 117696202 117702210 L1PA3long 6157 - 0 6153 3461 712 0 1 844 1 2 240 0 4 1084 0 4 1806 0 1 294 6 11 250 8 136 604 11 12 148 chain 3119 chr4 191154276 + 117710357 117710580 MSTD-int 1705 + 1467 1699 222579 32 70 71 18 88 96 15 chain 179346 chr4 191154276 + 117729157 117731170 L1PA4 6152 - 9 2022 21046 104 0 1 1504 2 1 403 chain 489530 chr4 191154276 + 117735972 117742366 L1PA7 6471 + 5 6470 7387 12 8 0 178 21 21 20 7 8 6 0 7 47 3 1 92 0 15 165 3 0 144 34 39 482 0 1 4 1 0 6 1 20 68 0 1 4 9 8 280 0 1 47 0 20 465 1 2 472 11 10 29 0 1 117 6 2 89 6 10 201 0 4 48 0 2 289 0 4 57 0 1 21 1 2 16 0 4 535 8 5 118 3 1 307 4 5 430 1 0 302 0 1 28 4 5 172 0 1 163 10 9 826 0 2 12 chain 25481 chr4 191154276 + 117742391 117742692 AluY 311 + 0 296 102310 126 5 0 170 chain 4367 chr4 191154276 + 117754596 117754882 L1PA12 2803 + 1143 1388 202366 19 189 161 15 7 0 27 4 0 18 2 0 5 chain 88261 chr4 191154276 + 117769570 117770590 L1PA5 6144 - 12 1031 40278 326 0 1 168 3 0 114 1 0 4 0 1 134 0 1 270 chain 18443 chr4 191154276 + 117831305 117831509 L1PA4 6152 + 5947 6151 131662 204 chain 13205 chr4 191154276 + 117854309 117854463 L1PA6 6164 - 5 159 147440 154 chain 15290 chr4 191154276 + 117857041 117857231 L1PREC2 3366 - 1372 1566 140512 40 0 2 53 0 2 97 chain 50638 chr4 191154276 + 117901378 117901963 LTR14C 587 + 0 587 58548 272 0 1 170 0 1 143 chain 20857 chr4 191154276 + 117923721 117924024 THE1B 368 - 61 368 124437 58 11 10 7 1 0 18 17 24 21 1 0 169 chain 14212 chr4 191154276 + 117934096 117934263 L1PA7 6471 + 5446 5614 143839 112 0 1 55 chain 66413 chr4 191154276 + 117934263 117935100 L1PA7 6471 + 5617 6456 49910 218 10 12 54 12 14 382 3 1 158 chain 5425 chr4 191154276 + 117938095 117938168 L1MA3 4352 + 1333 1402 190747 15 4 0 54 chain 134205 chr4 191154276 + 117958840 117960312 L1PA3long 6157 + 4686 6157 27167 1138 1 0 333 chain 57242 chr4 191154276 + 118032285 118032947 L1P1 4361 - 416 1078 54371 269 1 0 378 1 2 13 chain 57046 chr4 191154276 + 118032947 118033576 L1PA4 6152 + 5513 6142 54502 629 chain 11900 chr4 191154276 + 118034514 118034657 THE1B-int 1605 - 0 143 152603 143 chain 64507 chr4 191154276 + 118034670 118035460 LTR17 781 - 0 781 50797 453 0 1 23 10 0 304 chain 75236 chr4 191154276 + 118044601 118045635 MER11C 1089 + 8 1059 45907 130 0 1 108 0 9 57 0 4 215 69 67 91 1 5 4 1 0 38 0 1 127 0 1 54 4 3 117 0 1 18 chain 126140 chr4 191154276 + 118050445 118051845 L1PA3long 6157 - 0 1406 29054 259 1 0 85 0 1 385 0 6 670 chain 25348 chr4 191154276 + 118059946 118060293 THE1B 368 - 10 368 102969 65 1 0 101 2 0 11 10 9 115 1 16 41 chain 66518 chr4 191154276 + 118096208 118097031 L1PA7 6471 + 5633 6455 49858 77 2 1 164 1 0 44 0 1 535 chain 201151 chr4 191154276 + 118101243 118103909 L1PA7 6471 - 702 3319 19129 66 0 1 81 4 5 61 0 1 115 11 12 5 1 0 57 12 11 127 12 0 231 8 10 31 1 0 180 1 2 93 0 4 188 0 1 201 55 0 704 0 1 31 1 5 59 1 2 124 8 10 72 9 10 116 chain 71857 chr4 191154276 + 118104275 118105236 LTR5_Hs 974 + 0 974 47535 106 14 22 39 1 0 118 0 1 181 0 1 174 2 0 5 8 9 163 47 52 103 chain 11426 chr4 191154276 + 118123679 118123825 L1PA7 6471 - 3 145 154581 7 4 0 135 chain 5485 chr4 191154276 + 118130859 118130933 MLT1B 390 - 35 109 190165 33 0 1 21 1 0 19 chain 13366 chr4 191154276 + 118135923 118136265 L1PB1 5432 - 9 320 146831 5 1 0 14 1 0 13 1 0 21 15 14 10 25 20 15 20 9 21 1 0 43 3 2 15 2 1 52 16 10 14 1 0 7 7 6 19 chain 29351 chr4 191154276 + 118173262 118173658 LTR7 482 + 0 476 87282 68 9 47 109 0 1 39 0 31 10 1 2 8 0 9 152 chain 278440 chr4 191154276 + 118173666 118177283 HERVH-int 3825 + 0 3825 14726 161 0 2 170 1 0 133 0 1 63 1 0 40 2 1 9 1 0 12 22 12 15 1 0 11 11 8 12 30 47 14 21 0 68 0 1 4 13 11 441 16 1 194 9 0 44 1 0 210 4 31 376 2 11 299 15 16 374 1 0 278 14 19 29 0 200 7 0 10 257 6 8 225 chain 5155 chr4 191154276 + 118178947 118179005 THE1B-int 1605 + 1542 1600 193502 58 chain 77045 chr4 191154276 + 118185609 118186666 MER11C 1089 - 16 1089 44948 8 0 1 20 0 1 123 1 0 56 0 1 125 0 1 38 1 0 4 1 5 87 73 71 211 0 4 62 0 9 152 1 0 94 chain 81382 chr4 191154276 + 118193725 118194636 L1PA3long 6157 - 2257 3168 42909 598 1 0 10 0 1 302 chain 202236 chr4 191154276 + 118194636 118196880 L1PA3long 6157 + 3896 6142 19051 774 0 1 1342 1 2 127 chain 11962 chr4 191154276 + 118197325 118197485 L1PA8 5853 - 0 158 152358 93 2 1 18 2 1 45 chain 164707 chr4 191154276 + 118199417 118201810 L1PA8 5853 - 0 2091 22698 75 0 1 16 2 1 16 1 0 45 13 12 8 1 0 71 2 0 44 1 0 371 313 0 274 1 0 24 0 3 45 0 13 240 2 1 60 3 1 90 0 5 103 1 0 118 6 7 447 chain 42803 chr4 191154276 + 118206539 118207051 MER9a3 513 + 0 513 65653 164 1 2 347 chain 6166 chr4 191154276 + 118242716 118242809 L1PB1 5432 - 12 100 183824 16 1 0 13 1 0 21 1 0 24 2 0 14 chain 73097 chr4 191154276 + 118265836 118266630 L1PA2 6032 + 5238 6032 46981 794 chain 4911 chr4 191154276 + 118284463 118284595 LTR37A 408 + 2 149 196151 7 0 1 14 50 65 9 1 0 51 chain 9167 chr4 191154276 + 118284757 118284987 L1PA15 4387 + 4136 4357 164724 20 5 12 13 42 36 50 6 3 44 3 1 5 0 4 5 9 0 28 chain 3033 chr4 191154276 + 118342086 118342124 L1PA2 6032 + 5984 6028 224326 25 0 6 13 chain 21636 chr4 191154276 + 118387928 118388210 AluSz6 309 + 3 286 121636 27 1 2 254 chain 6079 chr4 191154276 + 118393916 118394000 LTR12_ 688 - 0 217 184587 54 0 133 30 chain 3143 chr4 191154276 + 118400706 118400742 MLT2B4 540 - 41 77 222118 36 chain 178200 chr4 191154276 + 118440085 118442223 L1P1 4361 - 44 2192 21146 12 1 0 155 1 0 117 0 2 59 0 1 455 6 7 310 1 0 28 1 0 396 0 12 341 0 1 23 1 0 44 0 1 49 3 0 135 chain 33670 chr4 191154276 + 118442223 118442627 L1P1 4361 + 1737 2140 77875 282 1 0 121 chain 13467 chr4 191154276 + 118468304 118468459 L1P1 4361 + 251 406 146460 155 chain 9649 chr4 191154276 + 118499665 118499983 MSTD 398 + 0 333 162352 98 176 193 29 1 0 7 1 0 6 chain 33760 chr4 191154276 + 118520432 118520875 LTR7 482 - 13 482 78002 163 0 1 8 0 31 151 21 15 100 chain 33007 chr4 191154276 + 118521276 118521723 LTR7 482 - 0 482 79204 158 0 10 19 0 31 114 2 1 34 20 15 100 chain 161085 chr4 191154276 + 118522951 118524884 HERVH-int 3825 - 0 1941 23178 383 33 34 990 5 4 5 0 1 110 0 2 195 10 15 202 chain 32893 chr4 191154276 + 118528704 118529086 L1PA5 6144 - 1 383 79380 382 chain 155476 chr4 191154276 + 118529100 118530845 L1PA4 6152 - 1 1754 23924 857 1 0 427 0 9 460 chain 22918 chr4 191154276 + 118554949 118555235 L1PA6 6164 - 2 286 116022 13 3 0 97 0 1 173 chain 7172 chr4 191154276 + 118558192 118558282 MLT1A0-int 1658 + 263 353 176260 90 chain 323554 chr4 191154276 + 118576641 118580245 L1PA3long 6157 - 0 3604 12462 63 0 1 3403 1 0 137 chain 128992 chr4 191154276 + 118580245 118581733 L1HS 6032 + 924 2413 28312 647 0 1 841 chain 400298 chr4 191154276 + 118587818 118592276 L1PA3long 6157 - 15 4488 10089 1596 1 0 979 0 1 299 1 0 4 0 1 107 0 11 353 0 4 1118 chain 448862 chr4 191154276 + 118601321 118606429 L1PA5 6144 - 15 6123 8793 297 3 2 1479 0 4 774 0 1 292 1 0 716 1 2 1474 0 996 71 chain 5388 chr4 191154276 + 118606459 118606526 THE1B 368 + 301 368 191108 67 chain 8891 chr4 191154276 + 118618041 118618264 L1PB1 5432 - 50 262 166175 12 1 0 20 62 54 12 6 5 41 2 1 16 2 1 26 0 1 23 chain 11867 chr4 191154276 + 118619511 118619674 L1PB4 2604 + 2407 2570 152754 40 1 2 103 1 0 18 chain 11830 chr4 191154276 + 118627895 118628076 L1PA16 3655 + 2286 2465 152909 138 18 16 25 chain 26231 chr4 191154276 + 118647622 118647928 L1PA7 6471 + 6160 6466 99088 306 chain 28147 chr4 191154276 + 118666369 118666762 L1PA16 3655 - 241 619 92469 122 21 8 83 1 0 111 2 1 53 chain 11277 chr4 191154276 + 118666762 118666902 L1PA16 3655 + 3448 3585 155141 130 3 0 7 chain 4053 chr4 191154276 + 118676011 118676063 MER57C2 434 + 381 434 206608 5 0 1 47 chain 26737 chr4 191154276 + 118679855 118680223 THE1B 368 + 0 368 97196 13 2 0 26 1 6 126 9 7 115 1 0 75 chain 4190 chr4 191154276 + 118751779 118751825 MADE1 96 - 50 96 204688 46 chain 21708 chr4 191154276 + 118753323 118753686 HUERS-P2-int 2744 - 5 351 121362 24 2 0 12 9 5 9 1 0 16 1 2 16 3 0 38 1 0 16 5 3 7 1 0 9 2 1 33 4 0 36 2 0 72 1 0 19 0 4 24 chain 21481 chr4 191154276 + 118760097 118760369 AluSg 306 + 11 297 122212 216 6 20 50 chain 74324 chr4 191154276 + 118805359 118806564 L1PA7 6471 - 3 897 46350 76 0 1 74 8 9 501 312 0 186 1 0 47 chain 22900 chr4 191154276 + 118807639 118807919 AluY 311 + 11 292 116105 118 1 2 161 chain 78200 chr4 191154276 + 118840320 118841366 MER11C 1089 + 0 1064 44419 246 0 9 62 0 4 64 1 0 150 48 48 28 0 1 6 0 1 71 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 chain 535556 chr4 191154276 + 118843139 118849141 L1PA3long 6157 + 0 6150 3506 152 0 1 158 3 0 470 0 128 1135 0 17 101 0 1 1014 1 0 85 0 1 285 11 12 900 0 3 1687 chain 8265 chr4 191154276 + 118853726 118853880 Tigger5 388 - 100 250 169596 17 1 0 11 2 0 16 26 25 81 chain 462853 chr4 191154276 + 118857039 118863283 L1PA8A 6298 - 8 6271 8294 104 4 5 229 0 1 458 18 27 4 0 1 39 0 1 151 0 1 179 0 2 353 0 6 221 2 0 452 4 21 8 2 0 155 0 1 409 12 15 26 1 5 17 1 2 25 1 0 15 12 14 50 6 8 56 0 8 244 4 8 14 3 5 93 6 8 196 0 1 135 0 1 403 18 28 181 0 1 109 10 41 204 86 21 385 2 1 14 1 10 673 43 38 77 8 2 19 2 1 40 16 11 14 46 39 14 3 1 12 1 0 7 1 0 12 2 1 9 1 0 19 7 1 5 1 0 8 2 0 15 3 0 20 5 0 10 2 0 4 3 0 9 0 21 9 chain 52355 chr4 191154276 + 118865341 118865968 L1P1 4361 + 3699 4341 57395 28 12 30 394 1 0 154 1 0 23 2 1 12 chain 80074 chr4 191154276 + 118867028 118867979 L1PA5 6144 + 5193 6144 43554 45 0 1 5 0 1 16 16 13 720 0 1 149 chain 8056 chr4 191154276 + 118868768 118868865 MSTA 426 - 321 419 170715 78 0 1 19 chain 334114 chr4 191154276 + 118871893 118875964 L1PA4 6152 + 2284 6152 12050 1900 310 109 372 2 1 53 0 1 1073 0 1 88 12 10 252 1 0 8 chain 3915 chr4 191154276 + 118881876 118881920 L1PA5 6144 - 1176 1220 207327 44 chain 101305 chr4 191154276 + 118881920 118883093 L1PA5 6144 + 4955 6134 36441 748 0 4 84 0 1 197 13 14 131 chain 129040 chr4 191154276 + 118910794 118914169 L1PB1 5432 + 1468 5422 28308 78 21 23 146 32 31 91 0 1 284 26 1 141 1174 1827 21 0 1 327 14 8 53 42 19 104 1 2 47 0 13 63 9 15 41 2 1 7 0 2 50 5 12 22 18 7 76 38 34 82 5 4 11 1 0 21 1 0 12 41 34 31 1 0 9 2 1 15 1 0 45 6 5 9 4 0 16 10 0 15 34 29 15 1 0 23 13 11 18 chain 7574 chr4 191154276 + 118972774 118972868 L1P4 1494 + 287 386 173699 26 0 2 16 0 3 52 chain 9648 chr4 191154276 + 118988924 118989069 L1PA8 5853 + 5704 5847 162361 36 2 1 15 8 7 84 chain 42562 chr4 191154276 + 118991805 118992380 L1PA5 6144 - 0 500 65945 13 0 1 248 77 0 167 0 1 70 chain 19622 chr4 191154276 + 118992830 118993177 L1PA15 4387 - 131 486 128330 39 2 1 8 4 0 23 2 1 23 17 24 7 1 0 25 2 1 54 10 19 99 1 0 25 0 1 5 chain 91058 chr4 191154276 + 118996061 118997121 L1PA6 6164 - 2 1065 39272 339 0 3 122 0 1 382 1 0 216 chain 12047 chr4 191154276 + 119013227 119013361 L1PA5 6144 - 8 142 151995 134 chain 4916 chr4 191154276 + 119022813 119022870 Tigger3c 601 - 71 128 196102 57 chain 127203 chr4 191154276 + 119070041 119071426 L1PA3long 6157 - 1131 2516 28767 1385 chain 102549 chr4 191154276 + 119071426 119072552 L1PA3long 6157 + 5031 6157 36098 1126 chain 115458 chr4 191154276 + 119081755 119083169 L1P1 4361 - 2949 4357 32623 712 6 0 126 1 0 489 0 1 80 chain 158041 chr4 191154276 + 119083170 119084916 L1PA3long 6157 + 4410 6157 23585 294 0 1 1452 chain 9849 chr4 191154276 + 119101476 119101600 L1PA16 3655 - 119 242 161346 119 1 0 4 chain 83964 chr4 191154276 + 119112986 119116381 L1MA2 4263 - 390 1566 41915 72 3 0 139 1 0 23 11 11 42 6 3 185 1 2 37 0 1 26 0 1 320 2212 0 24 1 0 76 2 0 6 8 4 188 0 4 12 chain 110583 chr4 191154276 + 119138984 119140425 L1PA10 4194 + 2719 4161 34059 244 1 0 14 2 6 524 1 2 69 0 1 4 1 0 116 1 0 5 4 6 56 2 0 104 10 16 5 1 0 190 8 6 6 1 0 23 3 0 33 2 1 11 chain 24073 chr4 191154276 + 119171642 119171926 AluSp 311 - 15 299 109910 284 chain 15724 chr4 191154276 + 119187180 119187692 LTR12C 1709 + 773 1541 139201 64 42 0 112 7 48 25 25 0 8 205 487 24 chain 3593 chr4 191154276 + 119187244 119187286 LTR12C 1709 + 996 1038 153755 42 chain 8310 chr4 191154276 + 119213112 119213213 L1PA8A 6298 + 6189 6290 169342 101 chain 24323 chr4 191154276 + 119227473 119227895 MSTB 430 - 0 430 108528 133 19 20 40 33 39 43 23 24 8 0 1 96 2 1 25 chain 8454 chr4 191154276 + 119248034 119248138 MER30 238 - 0 101 168540 48 3 0 53 chain 29235 chr4 191154276 + 119296368 119296678 AluYa5 310 - 0 310 87881 310 chain 23589 chr4 191154276 + 119309292 119309658 THE1D 372 - 1 371 112639 132 28 29 14 16 20 13 2 1 161 chain 44555 chr4 191154276 + 119313730 119314365 LTR12 884 + 0 869 63517 23 2 1 184 1 134 34 2 0 47 0 1 201 43 13 39 0 133 59 chain 25233 chr4 191154276 + 119320992 119321290 SVA_A 1864 - 0 296 103574 164 2 0 132 chain 536835 chr4 191154276 + 119324857 119330992 L1PA4 6152 + 10 6151 3336 725 0 1 151 0 4 54 0 1 255 0 1 563 0 1 57 1 0 504 0 1 218 1 0 524 1 0 445 1 0 167 0 1 2468 chain 9044 chr4 191154276 + 119347261 119347363 L1PA4 6152 + 6039 6141 165349 102 chain 19172 chr4 191154276 + 119347378 119347673 LTR39 781 + 177 474 129607 90 23 16 138 14 23 30 chain 55181 chr4 191154276 + 119360315 119361377 MER4E1 777 - 10 777 55599 207 21 23 22 3 25 148 309 0 137 1 0 4 7 5 137 0 1 17 1 0 16 7 0 25 chain 39600 chr4 191154276 + 119362661 119363324 LTR9B 643 - 0 643 69889 40 13 12 57 3 17 14 12 1 32 73 41 35 5 6 172 0 2 5 4 9 65 0 2 133 chain 25329 chr4 191154276 + 119374711 119375005 AluY 311 + 0 298 103073 75 0 3 54 0 1 165 chain 7365 chr4 191154276 + 119376835 119377145 L1MB8 1703 - 52 311 175006 17 16 9 23 112 54 24 6 0 34 5 8 15 28 45 30 chain 14734 chr4 191154276 + 119385295 119385488 AluJr4 308 - 47 242 142162 153 2 4 38 chain 3604 chr4 191154276 + 119395225 119395313 MER58A 224 + 130 219 213585 14 36 37 38 chain 3630 chr4 191154276 + 119415729 119415771 MADE1 96 - 54 96 213153 42 chain 6729 chr4 191154276 + 119454624 119454727 L1PB1 5432 - 153 254 179475 43 1 0 12 6 5 41 chain 60191 chr4 191154276 + 119456456 119457100 SVA_D 2077 + 1412 2056 52735 644 chain 13617 chr4 191154276 + 119471622 119471807 MER44A 345 - 46 231 145910 35 0 1 124 2 1 24 chain 3956 chr4 191154276 + 119484342 119484458 LTR37A 408 + 204 339 208050 22 57 76 37 chain 2875 chr4 191154276 + 119511849 119511883 MLT2F 649 + 544 578 227435 34 chain 87825 chr4 191154276 + 119530544 119531611 MER11B 1079 - 0 1079 40438 309 8 2 384 0 1 50 0 17 316 chain 2734 chr4 191154276 + 119533050 119533080 MER21C 908 - 858 888 229693 30 chain 12807 chr4 191154276 + 119624133 119624271 L1PA7 6471 - 17 155 149026 138 chain 25215 chr4 191154276 + 119638630 119638976 L1PA16 3655 - 79 452 103662 25 6 12 19 0 4 222 0 8 54 5 14 15 chain 523808 chr4 191154276 + 119698278 119704393 L1PA6 6164 - 5 6164 4787 359 0 5 458 0 1 14 0 4 663 0 5 1292 0 1 167 0 1 77 0 2 533 0 18 156 0 4 65 16 0 153 3 12 730 0 5 524 0 4 152 0 1 25 13 17 8 1 0 238 1 0 48 1 0 171 1 0 246 chain 119393 chr4 191154276 + 119712705 119714060 SVA_B 1603 + 47 1601 31269 469 1 39 221 0 80 72 0 81 592 chain 2947 chr4 191154276 + 119725867 119725898 U2 167 - 136 167 226131 31 chain 21125 chr4 191154276 + 119753087 119753393 AluSx1 309 + 12 286 123474 185 36 4 85 chain 19199 chr4 191154276 + 119772442 119772664 AluSp 311 + 82 304 129528 222 chain 91802 chr4 191154276 + 119782624 119783947 L1MA2 4263 - 966 2298 39028 25 2 0 170 69 70 129 0 1 11 20 21 101 4 1 84 0 5 27 0 1 4 6 3 32 0 1 72 1 2 14 1 4 6 1 0 24 0 1 47 0 4 334 1 0 138 chain 53286 chr4 191154276 + 119798341 119799233 L1PA15 4387 + 3487 4366 56836 47 4 12 68 0 2 173 0 3 21 2 0 16 3 2 57 6 4 41 7 6 140 31 30 22 1 0 53 2 1 14 4 1 8 4 0 9 1 0 46 21 19 32 3 1 11 10 6 24 1 0 10 chain 59966 chr4 191154276 + 119799617 119800437 LTR12 884 + 1 884 52840 90 0 66 221 2 0 81 23 24 236 1 0 93 3 2 70 chain 5846 chr4 191154276 + 119802088 119802155 MLT1B 390 + 90 157 186722 67 chain 34236 chr4 191154276 + 119807407 119807856 L1PA8 5853 - 0 444 77298 93 1 0 19 13 16 35 1 0 10 1 0 72 2 0 44 1 0 21 1 0 22 1 0 112 chain 25402 chr4 191154276 + 119818167 119818534 THE1D 372 - 0 372 102675 148 18 19 12 2 0 7 5 9 14 0 1 150 0 1 11 chain 3840 chr4 191154276 + 119859559 119859610 MER2 342 - 267 318 209777 51 chain 125651 chr4 191154276 + 119897228 119898765 LTR12C 1709 - 0 1709 29200 263 0 9 209 0 4 12 24 24 71 3 1 5 1 0 115 0 159 159 2 1 363 1 0 4 0 1 14 0 1 186 4 7 101 chain 26826 chr4 191154276 + 119924235 119924600 THE1D 372 - 0 372 96891 12 12 3 192 0 2 31 0 4 53 0 10 65 chain 137011 chr4 191154276 + 119925395 119926901 L1PA4 6152 - 13 1519 26639 1506 chain 29948 chr4 191154276 + 119933549 119933996 L1PA8 5853 - 0 442 84974 92 2 1 19 2 1 43 18 16 15 1 0 5 0 1 52 0 5 7 17 11 21 1 0 95 0 1 57 chain 28388 chr4 191154276 + 119972341 119972645 AluYa5 310 - 8 310 91629 209 2 0 93 chain 552667 chr4 191154276 + 119983059 119989217 L1PA3long 6157 - 0 6156 1114 672 1 2 2104 2 0 169 1 2 881 0 1 93 0 1 1459 4 0 772 chain 374797 chr4 191154276 + 119994794 119999140 L1P1 4361 + 1 4341 10929 573 1 0 118 7 0 1451 1 0 77 0 1 1023 0 4 686 0 1 216 1 0 154 1 0 23 2 1 12 chain 83569 chr4 191154276 + 120000002 120000936 L1PA4 6152 + 5212 6146 42091 934 chain 124047 chr4 191154276 + 120010918 120012578 L1PA13 3608 - 120 1773 29685 22 1 0 25 6 4 40 3 1 5 1 0 55 1 0 63 3 1 112 1 0 32 1 0 135 0 3 256 0 2 44 0 2 5 6 0 723 0 4 11 0 2 6 19 16 84 chain 29554 chr4 191154276 + 120013813 120014125 AluYb8 318 - 6 318 86403 312 chain 16600 chr4 191154276 + 120021223 120021418 L1PA7 6471 - 18 215 136670 137 1 3 57 chain 7030 chr4 191154276 + 120044019 120044189 MER2 342 - 1 174 177252 19 73 76 78 chain 3148 chr4 191154276 + 120047595 120047800 L2a 937 + 213 422 221954 18 3 0 5 35 41 21 95 96 28 chain 128913 chr4 191154276 + 120094753 120096306 LTR12C 1709 + 0 1709 28332 148 14 9 562 0 118 140 0 41 94 1 0 5 3 1 106 0 4 211 6 7 263 chain 7584 chr4 191154276 + 120112541 120112642 LTR16B2 458 - 0 99 173645 83 2 0 16 chain 100350 chr4 191154276 + 120116930 120118291 L1PA11 4918 + 3095 4475 36675 409 9 0 7 0 9 62 1 37 13 4 0 29 1 0 28 2 1 5 0 1 241 0 1 4 8 7 66 3 1 310 4 0 7 7 3 33 0 2 21 3 2 13 2 0 59 1 0 9 chain 509871 chr4 191154276 + 120118842 120125294 L1PA6 6164 + 0 6161 6178 191 7 23 22 0 2 177 1 2 100 3 5 45 1 0 120 1 0 11 0 4 91 1 18 9 17 0 1407 0 1 104 1 2 222 0 1 163 3 7 456 7 8 135 0 3 99 1 0 646 0 1 70 0 5 118 0 1 34 14 7 58 0 4 299 1 0 343 1 0 252 0 1 226 326 0 333 1 0 335 chain 361647 chr4 191154276 + 120172062 120177032 L1PA7 6471 - 1 6463 11322 162 0 1 520 1 1227 43 53 0 897 0 1 90 0 1 27 1 0 15 3 2 378 13 20 58 0 10 657 0 1 447 2 0 491 23 24 333 0 21 141 15 15 19 63 148 63 61 60 36 138 335 16 11 10 193 chain 2294 chr4 191154276 + 120172807 120172841 L1PA7 6471 - 1974 2007 235426 4 1 0 29 chain 19657 chr4 191154276 + 120178325 120178572 AluSg7 307 + 11 258 128232 53 2 0 66 0 2 126 chain 28795 chr4 191154276 + 120189040 120189348 AluYb8 318 + 0 308 89918 308 chain 556833 chr4 191154276 + 120195268 120201282 L1PA2 6032 - 16 6032 629 82 0 1 313 0 1 5619 chain 265772 chr4 191154276 + 120245438 120248416 L1PA4 6152 - 16 2998 15403 1040 1 0 428 0 2 104 0 1 622 0 1 245 0 1 538 chain 75518 chr4 191154276 + 120263688 120264654 LTR5_Hs 974 - 0 974 45761 103 20 18 19 8 15 163 1 0 188 0 1 64 0 2 111 0 1 289 chain 6176 chr4 191154276 + 120288716 120288788 U4 144 + 0 72 183766 72 chain 41655 chr4 191154276 + 120300215 120300672 L1PA2 6032 - 8 463 67084 5 2 0 450 chain 449844 chr4 191154276 + 120302097 120307409 L1PA6 6164 - 282 5614 8771 57 7 6 63 4 6 43 0 2 307 0 1 405 0 1 625 0 4 111 0 1 572 1 0 31 0 1 340 1 0 25 0 5 404 0 1 268 3 0 274 6 0 473 2 0 21 0 1 172 10 4 219 0 1 533 0 4 78 1 18 236 1 0 19 chain 23422 chr4 191154276 + 120307911 120308186 L1PB3 3668 - 1561 1836 113526 275 chain 24240 chr4 191154276 + 120309948 120310304 THE1B 368 + 0 368 108999 44 35 50 78 2 1 27 2 0 168 chain 76769 chr4 191154276 + 120317520 120318487 LTR5_Hs 974 + 0 974 45093 155 0 2 10 1 0 118 0 1 181 0 1 188 1 0 163 8 15 31 8 6 103 chain 66672 chr4 191154276 + 120320620 120321553 THE1B-int 1605 - 0 1605 49801 206 1 0 195 3 30 51 23 26 186 0 3 122 44 684 102 chain 86530 chr4 191154276 + 120351256 120352324 MER11B 1079 + 0 1079 40959 316 1 18 31 2 1 17 0 1 388 8 2 305 chain 21873 chr4 191154276 + 120364575 120364857 AluSp 311 - 25 309 120739 219 17 19 46 chain 22771 chr4 191154276 + 120376534 120376818 AluSg7 307 + 0 279 116722 94 12 6 31 0 1 147 chain 30647 chr4 191154276 + 120384166 120384559 L1PA6 6164 - 9 398 83125 134 5 6 89 6 1 159 chain 8288 chr4 191154276 + 120402984 120403309 L1MC1 2226 + 1888 2184 169466 16 95 88 54 1 0 7 5 0 9 5 4 17 2 0 14 43 32 10 1 0 8 6 5 32 chain 253730 chr4 191154276 + 120404070 120407410 L1PA10 4194 + 869 4146 16044 10 3 1 170 6 7 304 2 1 41 3 1 132 1 0 262 30 2 214 33 0 208 0 4 98 4 0 280 1 0 19 1 0 25 0 1 7 16 19 42 2 1 121 0 1 14 9 7 166 0 4 196 0 2 883 11 8 26 chain 3445 chr4 191154276 + 120430334 120430375 Tigger9a 622 - 72 113 216285 41 chain 28768 chr4 191154276 + 120469199 120469502 AluYk11 308 - 5 308 90031 303 chain 20275 chr4 191154276 + 120479870 120480090 AluYa5 310 + 81 300 126297 12 1 0 207 chain 6226 chr4 191154276 + 120491021 120491096 MER2B 336 + 212 287 183353 75 chain 272624 chr4 191154276 + 120496102 120499203 L1P1 4361 + 1241 4341 15040 1442 5 10 9 5 0 621 0 1 154 0 1 672 1 0 149 6 5 23 2 1 12 chain 89322 chr4 191154276 + 120500000 120500997 L1PA4 6152 + 5147 6143 39875 745 1 0 251 chain 27170 chr4 191154276 + 120508524 120508828 AluYb8 318 - 8 308 95696 7 3 0 177 1 0 116 chain 37735 chr4 191154276 + 120557819 120558297 MER1A 529 - 9 488 72509 59 2 4 315 1 0 101 chain 19337 chr4 191154276 + 120559049 120559415 MSTA 426 - 18 426 129118 91 1 21 33 74 72 44 20 44 103 chain 5791 chr4 191154276 + 120579875 120580115 L1MB7 1623 - 200 413 187246 44 44 43 13 1 0 12 59 49 14 12 1 22 5 1 14 chain 4712 chr4 191154276 + 120599662 120599727 MER3 215 - 33 98 198362 65 chain 4797 chr4 191154276 + 120603114 120603216 Charlie1a 1436 + 265 366 197397 24 6 5 20 15 16 28 1 0 8 chain 29199 chr4 191154276 + 120607269 120607580 AluYb8 318 + 0 311 88059 311 chain 2975 chr4 191154276 + 120615007 120615042 U2 167 + 0 35 225516 35 chain 91013 chr4 191154276 + 120620199 120621248 L1PA7 6471 - 3 1083 39288 375 0 23 443 0 4 122 0 4 109 chain 20977 chr4 191154276 + 120626880 120627235 L1PB 1623 + 98 442 124002 4 1 0 4 1 0 11 1 0 36 18 15 19 10 7 75 1 0 121 10 9 43 chain 32028 chr4 191154276 + 120634048 120634460 THE1B-int 1605 + 1178 1592 80823 77 0 1 98 9 10 228 chain 340425 chr4 191154276 + 120637722 120642917 L1PB1 5432 + 180 5423 11888 125 1 0 26 10 11 63 1 0 4 4 5 113 93 57 18 84 85 75 16 14 40 0 1 64 19 21 115 3 8 26 11 11 166 0 2 165 0 2 7 9 19 62 17 18 144 0 1 147 0 1 22 3 0 6 0 3 85 0 2 184 1 0 184 0 1 54 13 14 27 0 7 12 0 1 4 3 2 42 1 0 42 5 6 30 9 10 41 1 2 7 0 8 80 17 106 34 39 31 99 6 7 316 0 1 124 0 1 176 0 2 131 0 1 22 17 0 9 2 6 98 0 1 154 1 2 229 1 3 255 5 10 142 4 0 6 1 3 68 1 0 44 0 1 50 3 2 66 1 2 222 30 18 24 1 0 6 1 0 12 19 14 50 2 1 14 2 1 45 6 5 9 3 0 16 8 0 15 3 1 5 1 0 14 2 0 24 1 0 34 1 0 14 1 0 5 chain 11283 chr4 191154276 + 120659425 120659578 L1PA8 5853 + 5702 5853 155117 37 3 2 19 2 1 92 chain 36705 chr4 191154276 + 120696504 120696960 MER41A 554 - 93 552 73954 33 0 1 125 12 14 286 chain 30923 chr4 191154276 + 120697411 120697836 MLT2A1 477 + 0 477 82642 168 5 2 11 0 1 12 0 20 169 23 57 37 chain 45101 chr4 191154276 + 120700239 120701002 L1PA13 3608 - 60 794 62933 7 2 0 6 1 0 14 6 0 3 1 0 8 33 25 12 6 5 20 8 4 48 7 4 31 1 0 26 1 0 52 12 10 109 11 10 22 1 0 80 1 2 139 16 18 79 chain 23441 chr4 191154276 + 120705634 120706019 THE1D 372 - 0 372 113425 55 0 4 116 22 25 85 11 21 4 1 0 5 29 0 57 chain 22806 chr4 191154276 + 120706409 120706691 L1PA7 6471 - 1 285 116549 149 2 3 105 0 1 26 chain 32861 chr4 191154276 + 120759886 120760502 L1PREC2 3366 - 318 888 79435 22 17 20 35 22 8 11 9 6 20 26 8 11 4 2 18 28 20 13 3 0 4 1 0 98 2 0 32 4 3 147 0 3 89 chain 116051 chr4 191154276 + 120768771 120770280 THE1B-int 1605 - 5 1605 32437 320 0 1 258 10 13 273 0 31 103 0 28 103 13 38 306 10 13 113 chain 25827 chr4 191154276 + 120779653 120779999 THE1C 375 + 0 335 100760 62 1 0 46 11 1 226 chain 123743 chr4 191154276 + 120807260 120808626 L1PA3long 6157 - 0 1385 29796 132 8 23 694 0 4 532 chain 45455 chr4 191154276 + 120808626 120809132 L1PA3long 6157 + 4258 4764 62369 506 chain 2957 chr4 191154276 + 120817885 120817920 HSMAR1 1287 - 1252 1287 225934 35 chain 250441 chr4 191154276 + 120837093 120840354 L1PA10 4194 + 955 4161 16216 234 14 12 75 85 1 198 0 1 4 0 1 4 5 4 724 8 13 422 0 1 54 6 16 38 0 1 197 5 0 236 1 16 802 0 7 100 4 1 33 1 0 11 chain 566237 chr4 191154276 + 120869881 120875913 L1HS 6032 - 0 6032 137 6032 chain 14129 chr4 191154276 + 120893171 120893389 MER30 238 - 1 231 144110 38 3 0 72 8 23 67 15 15 15 chain 40980 chr4 191154276 + 120914818 120915271 LTR7 482 + 0 482 67933 56 2 0 208 0 31 187 chain 291482 chr4 191154276 + 120915273 120919107 HERVH-int 3825 + 0 3816 13934 20 0 1 361 0 4 129 60 0 17 5 0 38 1 0 10 1 0 9 25 15 15 1 0 12 131 0 24 42 0 42 16 15 17 2 1 38 7 11 444 15 0 196 0 1 21 0 1 219 2 1 19 8 35 1135 1 0 5 1 2 262 8 218 48 0 3 50 3 0 6 1 4 367 chain 40034 chr4 191154276 + 120920375 120920821 LTR7 482 + 0 482 69272 27 0 5 198 0 31 221 chain 331942 chr4 191154276 + 120933829 120938307 L1PB1 5432 - 14 4399 12131 14 1 0 13 1 0 21 1 0 18 30 25 14 9 0 17 3 0 15 1 0 44 1 0 16 2 1 53 2 0 9 115 42 13 0 1 98 0 19 364 7 4 38 0 1 32 1 0 590 1 0 235 5 1 136 0 1 4 1 0 204 0 1 125 0 4 17 0 8 349 0 2 27 1 0 348 6 0 218 0 3 725 0 4 126 8 7 14 19 3 77 1 0 245 4 0 39 chain 29294 chr4 191154276 + 120954634 120954959 L1PA3long 6157 + 5831 6156 87606 325 chain 5651 chr4 191154276 + 120971349 120971422 MER96B 391 + 81 154 188561 73 chain 17871 chr4 191154276 + 120984899 120985140 AluSg4 309 + 15 274 133195 167 13 31 61 chain 9046 chr4 191154276 + 120997380 120997544 L1MA5A 2387 - 94 232 165340 17 0 3 41 26 0 14 9 6 57 chain 22014 chr4 191154276 + 121009270 121009615 THE1B 368 - 0 368 120165 39 15 23 7 1 0 31 7 8 88 7 6 83 6 7 17 0 15 44 chain 114585 chr4 191154276 + 121028367 121029637 L1PA5 6144 - 0 1270 32927 243 1 0 95 0 1 931 chain 316177 chr4 191154276 + 121046570 121050088 L1PA4 6152 + 2625 6146 12756 470 0 2 65 1 8 1465 1 0 103 9 0 137 0 4 1267 chain 23641 chr4 191154276 + 121062491 121062827 THE1B 368 - 0 345 112351 125 17 29 10 8 6 29 1 0 146 chain 6823 chr4 191154276 + 121087093 121087166 L1HS 6032 + 5959 6032 178767 73 chain 19731 chr4 191154276 + 121122188 121122402 L1PA3long 6157 - 0 214 128010 214 chain 31213 chr4 191154276 + 121140723 121141190 MLT2A1 477 + 0 477 82137 84 1 0 58 0 1 20 6 10 222 6 22 32 26 16 12 chain 75598 chr4 191154276 + 121165848 121166865 MER11A 1151 - 0 1151 45716 49 1 0 114 10 11 5 1 0 35 1 2 14 0 1 58 19 54 88 0 1 32 3 4 145 0 1 93 0 1 54 0 1 4 1 0 90 4 0 66 1 0 74 0 99 55 chain 549273 chr4 191154276 + 121171890 121177933 L1PA2 6032 - 2 6031 1542 626 1 0 1551 0 1 1566 0 1 697 1 0 891 14 0 441 1 0 182 1 2 71 chain 9353 chr4 191154276 + 121204553 121204655 L1PA2 6032 + 5660 5762 163789 102 chain 18193 chr4 191154276 + 121220399 121220681 THE1B 368 + 0 289 132348 131 1 7 31 8 7 30 4 8 13 4 3 12 2 1 46 chain 116015 chr4 191154276 + 121230909 121232412 THE1B-int 1605 - 6 1558 32449 443 1 2 133 0 1 4 1 0 304 6 26 11 0 2 211 11 36 146 0 1 232 chain 16482 chr4 191154276 + 121232459 121232812 THE1B 368 - 0 361 136976 125 59 66 42 61 63 51 1 0 14 chain 5195 chr4 191154276 + 121283271 121283362 MLT1B 390 + 238 329 193087 20 3 0 5 7 10 56 chain 75900 chr4 191154276 + 121332581 121333732 L1MA1 4479 + 3068 4179 45542 90 1 0 17 4 0 76 3 6 133 1 0 114 0 1 14 5 0 126 7 3 66 1 0 25 2 0 16 1 0 71 1 0 4 11 6 10 2 0 13 0 4 7 7 0 7 0 7 42 1 0 21 9 5 123 4 3 29 3 0 35 1 0 9 1 0 8 2 0 13 8 0 7 chain 8899 chr4 191154276 + 121340726 121340832 L1P1 4361 - 33 138 166141 23 1 0 82 chain 64147 chr4 191154276 + 121340832 121341563 L1PA5 6144 + 5408 6139 50940 731 chain 23579 chr4 191154276 + 121355220 121355491 L1PA3long 6157 - 7 278 112694 271 chain 379323 chr4 191154276 + 121381501 121386487 L1PA7 6471 + 5 6459 10778 39 33 34 149 17 2 13 8 23 121 59 42 179 3 4 390 8 6 235 0 1 49 1 2 99 0 3 183 70 0 299 0 1 641 0 2 58 0 2 59 16 0 133 0 7 85 54 180 384 0 1 100 1 0 4 0 1 513 0 1426 22 0 1 123 1 0 13 11 12 813 chain 259985 chr4 191154276 + 121397694 121400654 L1PA5 6144 + 3178 6144 15702 80 0 2 609 0 2 1095 0 3 273 0 1 892 2 0 9 chain 29244 chr4 191154276 + 121407659 121407969 AluYa5 310 - 0 310 87829 310 chain 54964 chr4 191154276 + 121415506 121416123 L1PA3long 6157 + 5541 6157 55729 210 5 2 54 0 1 199 0 1 149 chain 510767 chr4 191154276 + 121429968 121436405 L1PA7 6471 + 3 6461 6089 402 1 2 110 20 16 317 0 1 363 0 4 445 0 1 34 0 4 563 11 5 88 0 1 276 1 2 260 7 8 181 3 5 72 4 5 355 1 0 88 0 1 224 1 0 171 4 6 332 6 0 218 10 8 6 0 2 376 1 0 93 0 5 140 0 4 424 0 3 86 1 0 587 31 31 98 0 9 26 chain 327470 chr4 191154276 + 121451557 121455332 L1PA5 6144 - 13 3797 12295 177 1 5 571 1 2 62 0 1 201 0 1 303 4 0 463 0 4 781 1 0 211 0 1 168 4 5 716 0 1 111 chain 4190 chr4 191154276 + 121459309 121459359 L1MC3 1789 - 406 455 204680 4 1 0 45 chain 3334 chr4 191154276 + 121466169 121466210 MER51A 677 - 346 387 218345 41 chain 102391 chr4 191154276 + 121471198 121472457 LTR12C 1709 - 0 1709 36164 59 0 131 291 7 11 100 9 325 684 5 4 104 chain 2962 chr4 191154276 + 121484241 121484274 L1MB7 1623 - 202 235 225846 33 chain 120720 chr4 191154276 + 121493027 121494591 THE1B-int 1605 - 6 1605 30786 72 0 5 28 0 1 386 14 15 55 0 1 579 0 25 398 20 22 12 chain 26216 chr4 191154276 + 121509289 121509577 L1PA2 6032 - 17 306 99135 133 0 1 155 chain 120381 chr4 191154276 + 121518785 121520148 L1PA5 6144 + 4773 6141 30910 342 0 1 178 0 2 357 0 1 236 0 1 250 chain 10476 chr4 191154276 + 121530858 121530996 L1PA7 6471 + 6333 6469 158357 126 2 0 10 chain 479827 chr4 191154276 + 121564367 121569640 L1PA2 6032 - 18 6031 7736 2381 0 739 702 0 1 1077 1 0 378 1 0 307 0 2 171 1 0 183 0 1 71 chain 157612 chr4 191154276 + 121571702 121573512 L1P1 4361 + 2549 4328 23646 629 0 1 319 30 0 653 1 0 154 1 0 23 chain 366452 chr4 191154276 + 121595285 121601588 L1PB1 5432 + 50 5391 11197 165 1068 123 25 1 13 151 104 105 108 3 8 170 7 5 49 0 1 244 11 13 9 0 4 124 0 2 35 3 0 5 8 1 524 0 4 181 0 7 368 13 9 315 1 0 7 0 1 16 10 0 61 0 1 187 17 1 83 1 21 80 4 0 89 0 1 325 0 1 46 0 3 61 1 0 196 2 0 63 18 19 549 5 10 59 0 1 9 1 0 243 18 7 145 1 2 5 2 0 4 1 0 24 25 19 11 1 0 29 0 2 21 2 1 16 1 0 42 2 1 16 1 0 4 0 7 4 17 0 14 1 0 6 3 1 14 2 0 24 1 0 21 chain 32711 chr4 191154276 + 121622322 121622875 L1PA16 3655 + 3083 3619 79669 118 1 0 19 15 11 60 2 0 55 7 8 56 1 0 94 10 12 23 1 12 21 46 24 7 1 0 16 chain 7304 chr4 191154276 + 121640270 121640406 MER20 218 - 40 194 175412 17 4 5 12 0 33 18 2 0 11 14 0 58 chain 9524 chr4 191154276 + 121657395 121657526 L1PB4 2604 - 227 360 162959 87 5 7 39 chain 543086 chr4 191154276 + 121662570 121668599 L1PA3long 6157 + 0 6157 2327 152 0 1 158 1 0 53 0 1 350 1 0 53 8 136 5253 chain 318315 chr4 191154276 + 121723431 121727200 L1P1 4361 + 4 4328 12658 144 10 556 330 1 0 592 4 5 201 0 1 97 0 2 380 0 2 4 0 1 262 0 1 1568 2 1 44 0 2 83 0 2 23 1 0 23 chain 96187 chr4 191154276 + 121728758 121730285 LTR12C 1709 - 0 1708 37773 84 134 0 85 1 0 46 10 9 257 20 13 97 30 32 105 0 278 190 15 14 28 5 7 39 0 1 4 11 10 29 0 43 37 9 10 207 26 25 58 chain 4550 chr4 191154276 + 121728849 121728903 LTR12C 1709 - 90 144 200217 54 chain 23077 chr4 191154276 + 121730285 121730554 L1PA5 6144 + 5871 6140 115261 269 chain 7282 chr4 191154276 + 121740605 121740685 L1PA3long 6157 + 6077 6157 175575 80 chain 16852 chr4 191154276 + 121753304 121753612 THE1C 375 - 50 375 135974 83 47 63 88 13 0 8 9 23 60 chain 4853 chr4 191154276 + 121762166 121762220 L1MA5A 2387 - 101 155 196748 54 chain 16877 chr4 191154276 + 121804697 121804897 L1PA5 6144 + 5944 6144 135896 200 chain 28983 chr4 191154276 + 121808941 121809246 AluYa5 310 - 5 310 89078 305 chain 3997 chr4 191154276 + 121831832 121831895 MADE2 80 + 12 74 207430 41 8 7 14 chain 10094 chr4 191154276 + 121852919 121853031 L1PA2 6032 - 2 114 160111 112 chain 511931 chr4 191154276 + 121864929 121872345 L1PA7 6471 + 1 6450 5982 112 0 1 65 0 1 5 1 0 18 4 0 70 29 30 18 8 12 52 13 16 210 2 1 69 55 50 10 0 2 38 3 1 196 0 1 4 1 0 358 10 13 87 1 5 277 0 1 795 0 2 119 0 1 221 0 1 232 0 1 178 2 3 246 1 0 477 3 0 376 994 0 104 0 1 183 4 8 283 2 0 290 0 9 367 5 8 392 3 0 88 0 6 335 chain 14637 chr4 191154276 + 121899273 121899540 L1PB1 5432 + 5158 5410 142465 10 3 1 51 2 1 16 1 0 44 1 0 15 3 0 17 8 0 14 8 5 16 2 0 22 1 0 12 1 9 13 1 0 6 chain 508474 chr4 191154276 + 121905883 121912298 L1PA7 6471 - 10 6462 6283 130 18 11 6 0 7 36 0 2 5 7 5 40 0 1 5 1 0 81 0 1 338 3 2 170 6 5 944 0 4 58 0 1 599 0 3 265 4 6 7 2 0 90 3 2 81 3 7 20 4 0 26 2 0 355 2 1 189 17 43 274 1 3 73 0 1 778 5 6 82 0 4 6 5 1 255 5 4 166 0 1 635 6 8 4 1 0 553 16 19 33 chain 503511 chr4 191154276 + 121917224 121923301 L1PA6 6164 - 4 6164 6636 759 0 9 400 0 1 420 0 12 256 0 2 604 1 0 3 1 0 210 0 1 172 0 4 10 0 9 100 4 5 119 3 4 93 0 1 400 6 17 125 8 0 21 0 4 72 0 2 32 0 1 24 1 0 402 4 5 5 0 1 43 8 7 41 0 1 164 0 14 419 0 1 249 0 1 91 0 17 392 1 0 4 0 1 410 chain 16443 chr4 191154276 + 121982394 121982594 7SK 245 - 6 206 137085 200 chain 3102 chr4 191154276 + 122000908 122000941 MIRb 242 + 108 141 222883 33 chain 23390 chr4 191154276 + 122008122 122008435 L1PB1 5432 - 764 1075 112504 35 5 1 10 5 6 145 0 1 113 chain 47749 chr4 191154276 + 122008435 122009269 L1PB1 5432 + 4683 5430 60654 31 1 0 90 1 0 284 78 26 20 1 0 13 16 11 9 2 0 52 7 6 12 1 0 43 1 0 16 13 10 7 9 0 14 8 5 16 2 0 22 1 0 21 1 0 13 1 0 16 2 0 10 chain 48584 chr4 191154276 + 122044521 122045075 L1PA5 6144 - 1 556 60048 142 1 2 411 chain 5732 chr4 191154276 + 122049111 122049174 L1PA3long 6157 - 1398 1461 187823 63 chain 124016 chr4 191154276 + 122049176 122050548 L1PA3long 6157 + 4778 6149 29696 390 1 0 981 chain 96872 chr4 191154276 + 122123066 122124369 L1PB1 5432 + 3819 5103 37594 173 1 0 94 4 0 301 22 1 66 1 6 75 0 2 90 8 6 72 0 2 14 1 2 81 6 5 294 chain 101234 chr4 191154276 + 122159144 122160512 SVA_B 1603 + 0 1602 36454 39 7 36 126 0 1 217 3 1 135 0 3 35 21 20 15 8 5 22 37 0 2 0 80 88 0 3 6 40 0 39 0 201 528 chain 24809 chr4 191154276 + 122162042 122162927 L1PB1 5432 - 5 498 105842 4 1 0 5 1 0 12 2 0 6 1 2 5 1 0 23 1 0 24 2 0 14 8 5 19 28 16 12 1 0 43 1 0 16 5 4 5 0 1 15 20 5 23 16 11 13 1 0 6 1 0 20 368 22 162 chain 15445 chr4 191154276 + 122181906 122182191 L1PA11 4918 - 351 613 140065 13 1 0 15 13 9 10 5 0 15 4 0 10 3 0 5 0 2 16 2 0 78 2 1 55 12 7 26 chain 3551 chr4 191154276 + 122190631 122190685 MADE1 96 - 0 95 214529 16 1 42 37 chain 3639 chr4 191154276 + 122193610 122193709 MER41D 557 + 394 492 212996 36 43 42 20 chain 8620 chr4 191154276 + 122202070 122202209 MER51B 395 - 231 395 167637 58 0 6 34 17 36 30 chain 457624 chr4 191154276 + 122205974 122212073 L1PA7 6471 + 5 6467 8486 189 16 17 14 107 337 91 5 5 17 22 25 21 5 15 24 34 109 19 15 15 139 6 27 203 0 3 5 1 2 11 18 2 58 4 5 459 18 14 255 0 8 546 0 1 837 1 0 6 3 2 98 1 3 421 0 1 522 0 3 140 0 4 271 0 1 27 5 2 69 0 12 282 1 2 276 2 1 223 0 1 196 0 2 226 0 8 28 4 5 139 1 0 18 chain 7852 chr4 191154276 + 122216279 122216433 L1MA9 1812 + 204 349 171981 30 28 30 23 11 0 62 chain 45231 chr4 191154276 + 122231692 122232171 L1HS 6032 + 5550 6029 62792 479 chain 57277 chr4 191154276 + 122240471 122241117 L1PA4 6152 + 5500 6152 54350 384 0 1 256 0 5 6 chain 5445 chr4 191154276 + 122267447 122267509 LTR1 825 - 757 819 190566 62 chain 23114 chr4 191154276 + 122312349 122312692 THE1B 368 - 0 368 115073 73 7 8 44 7 15 10 0 4 10 8 6 30 1 0 109 0 15 44 chain 38321 chr4 191154276 + 122316876 122317315 L1PA6 6164 + 5723 6162 71685 439 chain 82856 chr4 191154276 + 122317708 122318709 LTR5A 1029 + 0 1029 42395 22 8 9 96 0 14 9 0 13 362 0 1 245 6 5 253 chain 385916 chr4 191154276 + 122326484 122332214 L1PB1 5432 - 12 5358 10576 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 24 12 16 1 0 43 1 0 16 2 1 8 1 0 4 4 3 37 2 0 10 6 2 10 1 0 6 1 2 4 1 0 20 81 12 287 5 13 178 0 3 43 1 2 141 0 1 309 307 0 404 1 0 26 6 1 6 0 5 153 5 7 219 7 0 34 5 6 427 1 0 17 4 3 127 0 1 101 0 2 92 4 0 91 0 1 65 0 10 407 0 4 156 1 0 4 0 1 14 0 1 30 0 4 51 0 1 48 0 5 12 4 5 187 15 0 28 24 26 113 0 2 52 1 0 368 0 3 37 9 8 158 2 1 231 7 6 146 13 17 127 chain 159191 chr4 191154276 + 122334846 122336911 L1PB1 5432 - 317 2564 23441 10 3 2 55 0 2 191 0 3 231 3 0 16 0 6 636 0 1 65 13 14 147 0 2 357 2 1 91 0 170 22 0 2 223 chain 5045 chr4 191154276 + 122336911 122336977 L1PB1 5432 - 2567 2633 194674 66 chain 13220 chr4 191154276 + 122336977 122337148 L1PB1 5432 - 2634 2805 147392 171 chain 7932 chr4 191154276 + 122337168 122337278 L1PB1 5432 - 2826 2934 171430 88 7 5 15 chain 76989 chr4 191154276 + 122337298 122338347 L1PB1 5432 - 2950 4027 44972 102 0 4 153 0 1 323 0 4 174 0 2 6 2 0 45 1 7 79 2 0 5 29 44 128 chain 100254 chr4 191154276 + 122338352 122339713 L1PB1 5432 - 4027 5402 36706 10 0 1 164 0 2 481 0 1 95 0 1 39 16 20 192 2 0 182 10 17 170 chain 39376 chr4 191154276 + 122357769 122358360 MER61-int 3695 + 2571 3165 70208 33 0 1 6 5 4 8 0 1 139 1 0 68 0 1 14 49 45 61 17 25 175 2 0 13 chain 96092 chr4 191154276 + 122362272 122363564 L1PA8 5853 - 3830 5375 37704 227 0 13 226 0 5 94 0 208 91 0 4 330 10 13 132 26 45 43 10 11 103 chain 301649 chr4 191154276 + 122363564 122367299 L1PA8 5853 + 2024 5740 13336 40 34 5 518 0 1 177 9 8 6 0 1 142 7 11 28 0 1 29 0 1 159 0 5 712 4 6 30 0 2 150 0 4 950 5 1 510 1 0 43 1 0 44 2 0 67 15 13 52 chain 77572 chr4 191154276 + 122367306 122368199 LTR5A 1029 - 134 1029 44704 709 0 2 37 1 0 111 0 1 35 chain 81724 chr4 191154276 + 122388770 122389847 MER11A 1151 - 0 1151 42881 4 1 0 62 1 0 90 0 1 101 5 63 255 7 1 103 0 1 58 0 1 22 0 1 54 0 2 27 0 11 64 1 0 21 1 3 7 2 0 102 10 18 79 chain 182410 chr4 191154276 + 122416510 122418713 L1PA7 6471 - 2 2211 20746 10 3 0 61 16 22 674 11 9 59 2 1 9 6 0 295 0 1 743 1 0 172 0 1 32 0 11 109 chain 66031 chr4 191154276 + 122418714 122419506 L1PA7 6471 + 3464 4257 50081 544 0 1 248 chain 85427 chr4 191154276 + 122424646 122425851 L1PB2 3958 - 120 1337 41372 63 1 0 22 10 8 66 1 0 62 1 0 34 0 1 42 1 0 88 4 0 13 2 0 61 8 5 10 0 3 44 14 12 67 0 2 137 0 24 15 0 1 68 0 1 65 1 0 94 8 6 203 chain 26560 chr4 191154276 + 122433747 122434120 MLT2A1 477 - 92 475 97808 181 0 1 23 12 11 10 10 9 33 0 11 104 chain 108431 chr4 191154276 + 122434130 122435449 HERVL-int 5654 - 9 1335 34583 165 7 14 234 8 7 619 0 1 286 chain 24094 chr4 191154276 + 122435450 122435781 MER61-int 3695 + 3365 3691 109776 65 9 5 144 0 5 62 6 0 45 chain 132929 chr4 191154276 + 122441046 122442511 L1PA4 6152 - 1 1467 27437 536 0 1 929 chain 83943 chr4 191154276 + 122442511 122443448 L1PA4 6152 + 3715 4653 41812 534 0 1 403 chain 28932 chr4 191154276 + 122448232 122448535 AluYa5 310 - 7 310 89315 303 chain 26176 chr4 191154276 + 122451869 122452207 THE1C 375 + 0 336 99296 6 0 1 118 3 0 211 chain 129747 chr4 191154276 + 122460185 122462063 L1PB1 5432 - 8 1872 28141 4 1 0 16 1 0 13 32 31 14 2 0 14 65 51 44 2 1 15 2 1 53 2 0 9 26 20 21 8 1 11 1 2 175 0 1 4 3 2 294 0 12 114 0 1 183 0 1 86 6 5 19 0 2 140 0 1 339 5 8 95 7 9 52 chain 506757 chr4 191154276 + 122465864 122471964 L1PA6 6164 - 12 6160 6418 1508 0 1 271 0 4 65 0 1 131 0 1 31 0 1 168 0 2 38 0 1 693 0 1 291 0 1 144 0 4 139 0 13 23 4 5 278 31 27 1486 0 17 119 1 2 111 1 2 91 0 1 231 6 5 49 0 1 32 4 5 154 chain 23896 chr4 191154276 + 122478269 122478588 THE1C 375 + 0 363 110922 6 0 1 92 0 42 53 2 0 9 0 3 100 0 1 42 1 0 14 chain 7883 chr4 191154276 + 122486124 122486259 MER34B 572 - 418 554 171787 33 0 3 47 5 8 12 2 0 16 6 3 14 chain 505094 chr4 191154276 + 122488363 122494605 L1PA7 6471 + 5 6458 6531 145 69 95 84 11 181 34 0 1 118 3 4 22 23 24 36 1 16 81 0 1 1586 4 0 87 0 2 118 0 1 55 7 8 793 2 0 32 0 1 51 3 5 206 5 6 31 9 0 1021 0 1 571 2 0 121 0 1 77 1 0 94 1 4 282 4 0 6 0 4 286 1 2 159 chain 80828 chr4 191154276 + 122512996 122513923 L1PA6 6164 + 5235 6162 43259 927 chain 50890 chr4 191154276 + 122525848 122526411 L1PA5 6144 - 16 580 58376 133 0 1 430 chain 501613 chr4 191154276 + 122537386 122543517 L1PA6 6164 + 2 6152 6748 80 0 1 435 6 1 6 0 5 37 1 0 208 2 0 32 0 17 210 2 1 135 5 6 67 1 0 297 1 4 582 4 0 199 8 0 377 0 1 23 1 0 4 0 1 271 12 14 23 0 1 124 0 6 7 17 13 314 0 1 41 4 0 160 0 2 32 8 0 125 0 12 509 0 1 256 1 0 247 8 7 410 4 1 6 0 9 81 0 1 609 5 4 134 chain 8899 chr4 191154276 + 122563954 122564061 MER57B1 401 - 294 401 166148 107 chain 115849 chr4 191154276 + 122581188 122582582 L1PA6 6164 - 4 1412 32513 7 5 0 134 4 5 519 4 32 147 0 1 9 0 3 390 9 2 6 0 1 91 8 0 61 chain 32887 chr4 191154276 + 122582582 122582959 L1PA6 6164 + 3987 4365 78820 75 0 1 302 chain 6582 chr4 191154276 + 122582959 122583030 L1PA6 6164 + 4369 4440 180594 71 chain 26039 chr4 191154276 + 122583040 122583342 L1PA6 6164 + 4441 4743 99861 302 chain 4288 chr4 191154276 + 122587634 122587684 ERV3-16A3_LTR 481 + 417 467 203373 50 chain 16633 chr4 191154276 + 122615195 122615408 L1PA5 6144 + 5932 6138 136577 39 6 0 100 1 0 67 chain 7374 chr4 191154276 + 122639457 122639682 L1MC1 2226 + 1992 2191 174947 49 42 36 6 5 0 18 3 1 20 17 7 10 1 0 6 11 10 30 1 0 6 chain 106875 chr4 191154276 + 122650444 122652127 L1PA8 5853 - 17 1357 35012 76 1 0 18 1 0 54 1 0 9 355 21 50 2 0 44 1 0 49 1 0 505 2 0 514 chain 29447 chr4 191154276 + 122666481 122666830 L1PA6 6164 - 15 382 86861 130 1 19 218 chain 60628 chr4 191154276 + 122666830 122667527 L1PA5 6144 - 0 706 52507 311 0 1 292 0 8 94 chain 42622 chr4 191154276 + 122667528 122667988 L1PA5 6144 + 4978 5438 65872 460 chain 220829 chr4 191154276 + 122673523 122676314 L1PA8 5853 + 3020 5810 17826 328 0 1 291 14 13 383 0 1 149 0 1 216 0 1 54 0 1 53 6 8 181 0 1 98 0 2 6 8 6 196 2 0 554 1 0 43 3 1 70 14 13 49 2 1 19 1 0 50 chain 4508 chr4 191154276 + 122694123 122694213 LTR26B 539 + 381 468 200696 48 27 24 15 chain 13612 chr4 191154276 + 122696905 122697165 L1MB3 1562 - 85 321 145927 35 52 26 57 18 20 98 chain 38986 chr4 191154276 + 122716705 122717191 LTR3B_ 500 - 17 500 70758 180 2 0 225 1 0 78 chain 3300 chr4 191154276 + 122772485 122772525 MER66B 489 + 295 337 218977 8 0 2 32 chain 15839 chr4 191154276 + 122785088 122785362 MER1B 344 + 40 329 138825 47 18 17 78 7 19 15 4 0 25 2 0 24 10 20 44 chain 10479 chr4 191154276 + 122786217 122786384 L1MA5A 2387 - 156 316 158343 13 8 5 26 1 0 32 2 0 47 1 0 37 chain 43277 chr4 191154276 + 122792994 122793613 L1PB2 3958 - 428 1089 65084 54 5 4 17 1 0 4 1 0 12 2 0 22 0 10 30 1 0 14 1 0 58 2 0 8 0 20 8 12 1 79 0 34 145 5 4 82 1 0 55 chain 3271 chr4 191154276 + 122832533 122832569 MADE1 96 - 1 37 219572 36 chain 3886 chr4 191154276 + 122838169 122838213 MLT1A0 366 + 290 334 209088 44 chain 11503 chr4 191154276 + 122839191 122839422 MLT1A1 405 + 69 333 154289 43 74 76 43 0 32 16 1 0 54 chain 3140 chr4 191154276 + 122847861 122847906 MER65A 464 + 417 464 222187 27 1 3 17 chain 2937 chr4 191154276 + 122852945 122852999 U2 167 + 107 156 226388 24 10 5 20 chain 101714 chr4 191154276 + 122943854 122945249 L1PB3 3668 + 1695 3062 36340 36 0 2 379 12 8 427 0 4 114 1 0 81 0 2 6 34 0 78 0 4 57 1 4 6 0 1 84 2 0 14 4 1 59 chain 435477 chr4 191154276 + 122949847 122955073 L1PA7 6471 - 4 5257 9181 157 1 2 103 0 8 494 1 0 83 1 4 19 7 8 160 0 1 4 1 0 713 0 1 421 0 18 59 0 2 375 21 0 761 4 5 7 0 1 644 7 17 645 1 2 201 0 1 175 1 2 160 chain 11518 chr4 191154276 + 123012086 123012329 L1PB1 5432 - 21 241 154225 9 1 0 11 1 0 14 8 7 24 2 0 14 1 0 5 2 0 29 19 6 12 1 0 14 0 1 28 1 0 18 1 0 6 0 1 4 1 0 17 chain 4464 chr4 191154276 + 123019010 123019135 L1MC1 2226 - 45 151 201177 29 1 0 18 44 31 20 5 0 8 chain 3489 chr4 191154276 + 123024608 123024646 MLT1J 494 - 327 365 215531 38 chain 542761 chr4 191154276 + 123031261 123037265 L1PA3long 6157 + 12 6152 2382 141 0 1 208 1 0 211 0 4 199 0 128 1232 0 1 2221 0 2 873 2 3 916 chain 50139 chr4 191154276 + 123048590 123049161 L1PA6 6164 - 2 567 58912 6 6 0 559 chain 22486 chr4 191154276 + 123057055 123057341 AluY 311 + 6 273 118076 120 21 0 82 0 2 63 chain 21692 chr4 191154276 + 123062418 123062705 AluSg7 307 - 14 299 121422 163 2 0 21 8 8 93 chain 25029 chr4 191154276 + 123080332 123080630 AluSc8 310 + 0 298 104647 11 4 0 121 0 3 98 0 1 64 chain 3074 chr4 191154276 + 123085607 123085656 L1MC4 1079 - 349 396 223457 11 5 3 33 chain 159948 chr4 191154276 + 123086236 123088028 L1PA4 6152 - 0 1800 23343 6 0 5 9 0 4 131 1 0 1645 chain 27823 chr4 191154276 + 123115022 123115316 AluYa5 310 - 16 310 93618 294 chain 17310 chr4 191154276 + 123136857 123138259 L1PB1 5432 - 2 2312 134758 4 1 0 25 1 0 8 1 0 23 1 0 24 2 0 13 10 7 18 11 4 8 3 0 13 5 4 43 10 9 8 0 2 49 2 0 9 5 1 14 1 0 6 1 0 24 3 0 8 960 1895 44 8 11 36 chain 3357 chr4 191154276 + 123154503 123154542 MIRb 242 - 111 150 217913 39 chain 11332 chr4 191154276 + 123163136 123163292 L1MA6 2487 + 2039 2194 154951 27 9 6 78 0 1 31 0 1 11 chain 63308 chr4 191154276 + 123173886 123175248 L1M1 2793 + 492 1744 51317 7 1 0 10 1 0 13 3 0 12 206 127 38 115 87 13 14 13 19 2 0 8 1 0 53 42 39 32 19 21 19 1 0 90 0 10 77 1 0 89 15 7 83 1 5 83 11 12 218 2 4 63 chain 11856 chr4 191154276 + 123181169 123181481 Tigger3a 397 - 29 397 152810 30 0 1 45 3 0 32 4 0 44 78 141 16 41 40 19 chain 210870 chr4 191154276 + 123215752 123218629 L1PA11 4918 + 13 4567 18437 29 2 0 29 13 8 30 15 14 5 2 0 52 1 0 33 2 0 5 2 1 58 0 1 199 0 4 431 0 1669 282 0 9 160 1 3 94 2 0 63 0 4 19 0 3 104 4 15 353 0 1 216 1 0 12 2 0 275 3 0 37 0 7 10 0 1 10 3 2 17 4 6 20 6 10 17 5 6 51 7 6 12 3 2 67 2 0 13 1 0 20 4 0 9 3 0 5 2 0 8 15 11 12 2 1 13 chain 4178 chr4 191154276 + 123231537 123231616 MER34 540 - 85 163 204850 27 19 18 33 chain 86092 chr4 191154276 + 123253785 123254719 L1HS 6032 - 0 935 41124 163 0 1 771 chain 3339 chr4 191154276 + 123279981 123280020 MADE1 96 + 57 96 218238 39 chain 12591 chr4 191154276 + 123280250 123280385 L1PA3long 6157 + 6005 6140 149876 135 chain 399452 chr4 191154276 + 123285878 123291114 L1P2 5180 + 14 5178 10119 49 0 1 81 5 4 42 4 3 45 61 60 48 44 17 56 0 1 25 19 0 58 0 4 7 1 0 47 85 9 5 1 0 162 21 0 49 0 15 52 0 1 71 0 25 363 1 0 4 7 8 926 8 34 890 8 7 115 3 1 215 0 6 208 0 1 85 0 1 140 2 0 29 0 1 261 0 1 246 1 0 67 0 1 137 1 2 5 1 0 152 0 1 229 1 0 49 1 0 38 1 0 4 chain 4754 chr4 191154276 + 123291481 123291533 L1PB4 2604 + 1984 2036 197861 52 chain 2996 chr4 191154276 + 123295228 123295287 MER96B 391 + 277 337 225113 13 0 11 10 10 0 26 chain 454712 chr4 191154276 + 123306753 123312833 L1PA8A 6298 - 8 5788 8590 83 0 2 10 6 0 9 4 11 75 7 8 513 3 0 86 1 4 68 0 2 34 7 12 584 7 9 39 5 0 21 0 1 427 33 27 56 0 1 58 323 0 278 0 1 166 1 0 255 0 2 23 3 7 16 1 0 7 5 0 18 4 5 118 0 2 192 0 1 92 0 4 27 0 3 35 1 0 139 0 4 251 2 4 243 3 0 598 5 9 20 1 3 215 4 0 144 1 4 121 1 0 7 1 0 15 1 4 67 5 6 366 1 0 168 chain 474565 chr4 191154276 + 123361231 123367342 L1PA7 6471 - 6 5893 7894 55 0 4 684 26 1 100 1 0 288 0 6 130 0 4 233 0 2 31 1 0 85 260 0 164 0 4 49 1 0 248 13 22 26 9 14 448 0 2 317 0 4 44 2 0 662 0 20 177 10 0 66 0 2 52 0 2 354 0 5 59 3 2 335 6 11 9 0 1 32 0 1 49 7 0 51 0 2 25 3 0 178 7 8 448 0 3 25 48 53 290 chain 18737 chr4 191154276 + 123362896 123363125 L1PA7 6471 - 5 242 130862 187 5 13 37 chain 537466 chr4 191154276 + 123380930 123387150 L1PA4 6152 - 2 6152 3242 4 1 0 5 3 0 578 0 1 257 58 0 67 23 6 89 0 1 656 1 3 348 0 1 875 0 5 91 2 0 1242 1 6 678 0 1 196 1 0 716 21 18 78 1 0 228 chain 4159 chr4 191154276 + 123389719 123389774 MADE1 96 - 0 96 205108 21 0 41 34 chain 556695 chr4 191154276 + 123414072 123420223 L1PA3long 6157 + 0 6157 647 135 1 6 1543 0 1 1102 0 4 416 0 1 7 1 0 2841 4 0 101 chain 21500 chr4 191154276 + 123431661 123431920 AluY 311 + 42 302 122143 89 1 2 169 chain 251846 chr4 191154276 + 123440709 123445281 L1MA1 4479 - 641 4342 16134 12 1 0 56 1 0 15 1 0 16 2 0 25 1 0 190 7 6 128 3 0 6 1 3 107 13 9 14 1 0 48 0 1 25 4 0 20 3 1 97 0 7 20 20 14 33 2 0 27 8 7 85 2 0 8 4 5 32 0 1 16 1 0 33 2 0 103 2 1 5 0 1 22 1 0 37 2 1 167 8 2 49 322 6 112 0 2 124 0 1 40 1 9 104 307 0 20 0 1 103 9 8 18 270 26 123 2 1 348 1 0 34 9 12 126 23 25 31 1 2 54 0 4 6 5 1 51 0 4 75 0 5 113 1 9 18 7 15 51 0 4 86 0 2 329 2 0 43 65 53 10 2 0 3 1 0 8 1 0 15 1 0 11 chain 32488 chr4 191154276 + 123477024 123477378 L1PA3long 6157 - 0 355 80047 259 0 1 95 chain 83245 chr4 191154276 + 123481350 123482556 L1PA6 6164 - 3 990 42235 199 9 6 163 218 0 98 0 2 519 chain 537758 chr4 191154276 + 123490334 123496476 L1PA5 6144 - 0 6144 3190 465 1 2 1472 2 0 46 0 1 30 0 1 17 2 1 66 1 0 889 2 0 2346 0 3 94 0 1 679 1 2 29 chain 41262 chr4 191154276 + 123528517 123529003 L1PA8A 6298 - 8 494 67580 486 chain 59342 chr4 191154276 + 123555019 123555730 L1PA7 6471 - 2 714 53198 147 0 1 564 chain 6298 chr4 191154276 + 123568455 123568527 LTR23 429 + 2 74 182811 72 chain 393411 chr4 191154276 + 123573813 123578005 L1HS 6032 - 0 4192 10342 4192 chain 19296 chr4 191154276 + 123591837 123592077 LTR12C 1709 + 928 1215 129255 140 4 51 96 chain 55617 chr4 191154276 + 123593547 123594208 PABL_A 660 - 0 660 55353 570 6 5 85 chain 44166 chr4 191154276 + 123640299 123640829 LTR12_ 688 + 0 688 63990 121 0 25 376 1 134 32 chain 114976 chr4 191154276 + 123646306 123648243 L1PB1 5432 + 3854 5427 32800 461 309 0 140 1 0 299 1 0 208 3 9 32 30 0 34 7 1 45 21 20 9 1 0 26 12 10 8 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 16 2 1 5 2 0 11 8 0 14 2 0 4 1 0 6 0 1 8 2 0 24 0 9 12 1 0 13 1 0 14 1 0 5 1 0 4 chain 18451 chr4 191154276 + 123667087 123667368 Tigger2a 444 - 64 377 131640 26 0 3 12 1 0 29 0 17 10 2 7 41 1 0 15 1 4 99 5 11 39 chain 20573 chr4 191154276 + 123674026 123674253 AluY 311 + 69 297 125384 63 0 1 164 chain 5506 chr4 191154276 + 123675027 123675108 MSTD 398 - 323 397 189977 54 3 0 4 4 0 16 chain 11324 chr4 191154276 + 123681610 123681734 L1PA4 6152 + 6027 6151 154984 124 chain 13128 chr4 191154276 + 123700400 123700617 Tigger1 2417 - 865 1087 147733 133 1 0 21 32 38 30 chain 108444 chr4 191154276 + 123706377 123708487 L1PB1 5432 + 3760 5296 34581 149 7 11 250 0 1 46 3 4 62 1 0 263 1 0 13 9 12 58 6 4 164 0 2 10 592 25 269 1 2 9 5 0 24 1 0 4 1 0 14 6 2 9 4 2 53 1 0 59 1 0 15 chain 42713 chr4 191154276 + 123707442 123708001 LTR10F 562 + 0 562 65756 230 31 35 12 1 0 14 0 1 164 1 0 106 chain 170357 chr4 191154276 + 123732307 123734357 SVA_D 2077 + 0 2071 22007 25 5 0 737 40 0 134 14 156 8 0 1 323 1 0 4 24 0 13 53 0 243 0 1 120 1 0 205 0 1 100 chain 3659 chr4 191154276 + 123733635 123733688 SVA_D 2077 + 1172 1225 118314 53 chain 56206 chr4 191154276 + 123739600 123740351 Charlie3 2679 - 5 741 55016 57 18 5 10 3 0 638 3 4 22 chain 23184 chr4 191154276 + 123746349 123746643 AluSp 311 + 0 289 114753 132 2 0 6 7 4 147 chain 35740 chr4 191154276 + 123770350 123770766 L1PA7 6471 + 6053 6470 75209 4 0 1 5 1 0 67 1 2 338 chain 271645 chr4 191154276 + 123789335 123792628 L1PA8A 6298 - 7 3618 15105 23 0 9 481 8 11 274 1 4 196 1 280 732 0 1 59 0 3 80 6 5 5 0 1 244 0 5 20 4 5 217 0 3 215 1 5 49 1 0 391 0 4 210 0 4 75 chain 25298 chr4 191154276 + 123800741 123801090 THE1B 368 - 0 368 103240 75 1 0 84 7 9 31 1 0 26 0 4 75 5 20 44 chain 125203 chr4 191154276 + 123801090 123802976 THE1B-int 1605 - 0 1605 29321 299 315 0 357 0 1 39 0 3 10 0 1 438 0 25 180 0 1 217 0 1 16 0 2 15 chain 26907 chr4 191154276 + 123802976 123803333 THE1B 368 - 0 366 96602 31 1 0 33 0 1 9 1 0 94 4 0 31 1 0 110 0 15 42 chain 6049 chr4 191154276 + 123824576 123824697 MER5A 189 - 1 127 184815 18 0 5 25 0 2 9 1 0 9 30 29 29 chain 41697 chr4 191154276 + 123827779 123829018 MER41B 635 + 0 635 67031 126 1 3 166 0 6 150 32 31 25 624 8 19 1 0 16 11 17 68 chain 4008 chr4 191154276 + 123852506 123852601 MER82 654 + 1 95 207266 18 5 4 14 1 0 5 14 16 28 1 0 9 chain 542622 chr4 191154276 + 123860799 123866951 L1PA4 6152 - 12 6151 2404 138 0 1 6 1 0 1136 1 0 98 0 1 821 0 1 773 2 1 2433 0 1 23 7 0 131 1 0 90 6 0 485 chain 4277 chr4 191154276 + 123879785 123879894 MER5A 189 - 78 182 203501 24 18 25 30 22 10 15 chain 25193 chr4 191154276 + 123904929 123905254 L1PBa1 4058 + 1144 1470 103365 154 1 0 75 1 2 19 0 1 60 1 0 6 0 1 8 chain 91659 chr4 191154276 + 123905254 123906873 L1PB 1623 - 207 1506 39065 19 7 14 76 0 3 25 0 1 48 0 1 73 8 2 46 0 4 10 0 3 129 0 1 20 1 0 156 1 2 138 1 0 4 0 1 4 4 0 52 1 0 98 9 0 75 1 0 2 320 0 6 1 0 50 1 2 82 1 0 70 14 11 13 2 0 4 1 0 32 0 8 14 chain 552435 chr4 191154276 + 123919468 123925614 L1PA3long 6157 - 0 6157 1141 843 0 4 540 0 1 273 0 4 547 0 1 729 0 1 3214 chain 4164 chr4 191154276 + 123928612 123928678 LTR9B 643 + 470 547 205041 32 8 19 26 chain 28470 chr4 191154276 + 123934117 123934510 LTR7 482 - 12 482 91306 162 0 1 12 12 41 29 0 1 73 0 50 40 9 5 56 chain 17200 chr4 191154276 + 123934630 123934843 L1PA8 5853 + 5572 5780 135037 36 2 0 71 1 0 61 2 1 19 1 0 20 chain 168318 chr4 191154276 + 123936339 123938270 SVA_D 2077 - 0 2019 22248 19 1 0 595 0 3 37 0 49 155 49 0 131 0 51 83 1 36 860 chain 3197 chr4 191154276 + 123937146 123937195 SVA_D 2077 - 682 731 93042 49 chain 126766 chr4 191154276 + 123942954 123944335 L1PA3long 6157 + 4758 6142 28867 542 0 3 839 chain 2671 chr4 191154276 + 123955381 123955429 MER8 282 + 207 254 230758 28 7 6 13 chain 8344 chr4 191154276 + 123979855 123979964 THE1B 368 - 260 368 169152 13 6 5 90 chain 25239 chr4 191154276 + 123979964 123980274 THE1B-int 1605 - 0 312 103545 9 0 1 7 0 1 294 chain 78744 chr4 191154276 + 123980310 123981175 L1PA3long 6157 - 0 865 44172 865 chain 16063 chr4 191154276 + 124043444 124043688 MER47A 366 - 48 294 138172 59 10 0 7 8 18 6 0 2 154 chain 64983 chr4 191154276 + 124044726 124045789 L1PA5 6144 + 5388 6130 50580 84 321 0 658 chain 28553 chr4 191154276 + 124044820 124045131 AluYg6 310 + 0 305 90945 118 6 0 187 chain 27226 chr4 191154276 + 124047640 124048012 THE1C 375 + 7 375 95511 178 13 13 135 3 0 17 1 0 25 chain 7250 chr4 191154276 + 124058074 124058296 MER1B 344 - 5 251 175763 54 11 18 24 12 15 27 79 93 15 chain 190792 chr4 191154276 + 124071115 124073458 L1PA7 6471 + 4144 6461 19969 523 0 4 51 0 5 103 9 7 429 2 1 233 0 1 120 1 0 18 12 0 72 1 4 272 0 3 93 2 1 236 6 3 64 1 0 18 21 0 56 chain 29185 chr4 191154276 + 124105683 124105990 AluYa5 310 - 3 310 88123 307 chain 372337 chr4 191154276 + 124145378 124149535 L1PA4 6152 - 11 4164 11016 102 2 3 887 0 1 1256 0 2 1639 12 4 259 chain 503573 chr4 191154276 + 124158861 124164884 L1PA6 6164 + 0 6137 6629 789 0 17 608 6 1 6 0 5 38 0 5 332 1 0 52 0 4 356 0 2 118 5 6 163 2 46 34 0 4 190 0 2 103 6 1 36 0 1 194 0 2 70 2 0 4 0 1 339 0 1 465 1 2 249 0 1 123 0 4 149 0 18 263 7 18 493 0 3 819 chain 48492 chr4 191154276 + 124184731 124185505 L1PB1 5432 + 4677 5422 60115 38 0 4 240 4 5 18 1 2 119 15 11 20 1 0 10 1 0 13 6 2 9 2 0 52 18 16 45 1 0 15 1 0 4 2 0 11 9 0 15 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 27916 chr4 191154276 + 124211658 124212017 THE1B 368 - 0 357 93300 75 1 0 119 3 2 161 chain 30233 chr4 191154276 + 124243973 124244697 L1PB1 5432 + 4864 5422 84104 16 0 9 131 0 4 79 150 3 8 3 0 24 10 8 12 5 1 8 2 0 53 2 1 15 1 0 28 18 17 11 37 24 11 2 0 4 1 0 15 6 4 20 1 0 4 0 3 14 1 0 10 8 7 14 chain 9508 chr4 191154276 + 124248186 124248297 L1PA8 5853 + 5742 5852 163026 18 1 0 92 chain 526376 chr4 191154276 + 124251816 124258307 L1PA7 6471 - 7 6470 4559 137 21 22 543 6 7 55 1 0 79 1 0 39 1 2 247 3 2 242 16 17 315 5 3 744 9 10 417 0 5 413 32 3 662 0 1 469 0 1 149 0 2 46 4 0 7 0 4 385 0 1 38 12 19 166 19 11 783 15 6 302 0 1 108 chain 12859 chr4 191154276 + 124303203 124303364 MSTB-int 1649 + 17 178 148808 161 chain 20353 chr4 191154276 + 124306457 124307136 THE1C 375 - 0 375 126051 22 6 5 47 0 1 14 14 11 93 1 14 14 363 48 56 0 1 49 chain 22254 chr4 191154276 + 124335701 124335965 AluY 311 + 21 284 119105 43 2 0 68 0 1 151 chain 23942 chr4 191154276 + 124336428 124336726 AluSp 311 - 17 310 110668 8 5 0 109 1 0 162 0 1 13 chain 23957 chr4 191154276 + 124350038 124350336 AluSp 311 + 5 294 110579 245 9 0 44 chain 24153 chr4 191154276 + 124350697 124351045 THE1B 368 - 0 368 109462 125 32 45 14 0 1 14 1 0 132 0 7 30 chain 75633 chr4 191154276 + 124353743 124354800 MER11C 1089 + 0 1073 45694 246 0 9 60 4 8 63 1 0 146 82 81 77 1 5 4 1 0 37 1 2 127 0 1 54 1 0 144 0 1 8 chain 17471 chr4 191154276 + 124356174 124356383 LTR12C 1709 - 641 850 134328 209 chain 43485 chr4 191154276 + 124381791 124382486 Tigger3 1187 + 213 913 64833 35 3 0 39 2 0 250 1 0 23 4 9 29 2 1 17 7 0 8 1 8 16 22 29 8 11 0 12 4 11 35 5 7 48 1 0 32 1 0 23 0 4 56 chain 19748 chr4 191154276 + 124398203 124398601 MSTB 430 + 0 430 127961 15 6 10 92 12 0 7 58 88 77 25 34 49 5 6 52 chain 34545 chr4 191154276 + 124424678 124425144 MER1A 529 - 14 529 76839 50 7 8 63 0 3 142 0 3 126 4 46 74 chain 6454 chr4 191154276 + 124430004 124430076 tRNA-Cys-TGY 72 - 0 72 181613 72 chain 208392 chr4 191154276 + 124432409 124434740 L1PA5 6144 - 0 2331 18614 2331 chain 133967 chr4 191154276 + 124434740 124436243 L1PA5 6144 + 2288 3795 27174 188 0 4 97 0 2 597 1 0 103 1 0 516 chain 144319 chr4 191154276 + 124458890 124460599 LTR12C 1709 + 0 1709 25426 214 0 1 622 1 0 275 9 6 99 7 11 218 8 7 256 chain 154882 chr4 191154276 + 124487300 124489390 L1PB2 3958 - 128 2203 23992 51 6 5 21 2 0 72 1 0 64 1 0 79 1 0 86 5 0 13 2 0 65 6 0 10 1 18 38 3 1 118 1 0 265 1 0 150 0 1 34 5 0 247 21 15 713 0 1 8 chain 23335 chr4 191154276 + 124517102 124517394 AluSc 308 + 5 298 114002 248 6 5 17 0 2 21 chain 9723 chr4 191154276 + 124522870 124523043 Tigger1 2417 + 13 200 161974 13 20 35 42 14 13 84 chain 7092 chr4 191154276 + 124523054 124523136 L1PA8 5853 - 0 82 176817 82 chain 473749 chr4 191154276 + 124554432 124560222 L1PA7 6471 - 4 5821 7923 29 0 2 200 5 4 61 4 0 471 0 2 22 0 5 50 1 0 200 0 1 4 1 0 744 0 4 182 0 1 499 4 0 410 0 4 15 4 8 46 2 0 399 1 5 466 0 1 11 0 1 507 0 1 153 0 1 252 21 33 525 0 1 114 3 0 315 42 40 22 0 1 5 chain 6014 chr4 191154276 + 124560224 124560293 L1P3 4156 + 749 818 185092 69 chain 65721 chr4 191154276 + 124560731 124561465 L1PA3long 6157 - 0 733 50238 148 2 1 584 chain 31553 chr4 191154276 + 124574786 124575180 MLT2A1 477 - 80 473 81560 192 0 1 34 5 2 25 0 1 138 chain 22010 chr4 191154276 + 124576819 124577172 THE1C 375 - 0 372 120183 133 56 69 55 5 14 6 3 0 95 chain 120052 chr4 191154276 + 124577194 124578762 THE1C-int 1605 - 19 1605 31040 60 0 8 118 0 1 507 5 6 125 0 9 7 22 7 148 0 7 65 0 2 10 7 6 48 0 7 412 3 0 5 12 14 14 chain 6346 chr4 191154276 + 124592203 124592343 MER96B 391 - 17 163 182423 12 13 11 12 13 25 6 3 0 17 1 0 63 chain 7892 chr4 191154276 + 124603020 124603188 MER30 238 - 0 184 171712 45 0 3 7 18 18 11 19 36 10 4 0 54 chain 115523 chr4 191154276 + 124605463 124606930 SVA_B 1603 + 0 1603 32601 7 17 0 32 6 35 373 40 0 299 0 40 39 1 4 28 7 91 41 5 45 422 3 2 139 2 0 6 chain 3376 chr4 191154276 + 124627415 124627486 L1PB1 5432 - 20 88 217550 8 1 0 13 15 14 4 1 0 29 chain 91185 chr4 191154276 + 124631538 124632864 L1PBa 3878 + 849 2162 39237 251 0 1 5 1 0 376 6 6 63 111 95 75 7 9 124 1 0 28 0 1 100 0 1 178 chain 417686 chr4 191154276 + 124635209 124640366 L1PA7 6471 + 1316 6468 9590 95 0 1 347 2 1 36 0 3 29 0 2 152 6 5 332 4 5 303 9 0 438 0 1 63 0 1 137 19 13 223 1 0 499 4 0 132 0 1 399 0 3 74 0 1 240 0 1 328 1 0 27 0 1 393 1 0 98 2 3 338 0 1 263 3 4 159 chain 151411 chr4 191154276 + 124640408 124642539 L1PB1 5432 + 3200 5281 24410 32 0 6 283 7 11 199 32 8 70 0 5 276 4 5 20 0 1 459 6 7 45 6 8 230 16 5 24 0 1 4 1 0 38 24 0 166 1 2 9 3 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 27 0 1 16 chain 553527 chr4 191154276 + 124642545 124648688 L1PA3long 6157 + 4 6149 1002 608 0 1 94 0 1 1618 1 0 31 0 1 819 3 0 6 0 1 80 0 4 390 1 0 2125 1 0 366 chain 52390 chr4 191154276 + 124685132 124686040 L1PB1 5432 - 12 1702 57362 16 1 0 13 1 0 21 1 0 9 1 0 15 25 20 29 14 1 15 7 6 38 1 0 14 0 3 45 8 6 10 9 5 7 1 0 13 1 0 20 55 11 10 0 15 73 8 3 119 4 1 73 1 9 144 0 840 86 chain 50419 chr4 191154276 + 124686862 124687471 L1PB 1623 - 170 781 58699 7 1 0 47 0 1 91 0 1 272 0 1 191 chain 3778 chr4 191154276 + 124688628 124688698 L1PA15 4387 + 4285 4356 210691 29 3 1 11 6 9 21 chain 163523 chr4 191154276 + 124700545 124702838 L1PA8 5853 - 38 2039 22873 55 1 0 19 9 8 44 1 0 10 6 5 64 2 0 48 1 0 223 0 6 252 0 1 619 104 0 4 193 0 7 0 3 82 3 4 150 0 1 396 chain 47526 chr4 191154276 + 124710664 124711264 L1PA8 5853 - 0 593 60824 92 7 6 14 2 1 50 10 8 74 3 1 43 1 0 304 chain 4030 chr4 191154276 + 124712222 124712335 MER5A1 166 - 4 140 206939 15 51 74 47 chain 124177 chr4 191154276 + 124713861 124715646 L1PB2 3958 - 120 1872 29641 63 1 0 21 14 12 63 11 10 52 1 0 79 1 0 86 4 0 14 6 4 46 18 11 15 1 0 37 0 4 12 7 5 137 0 2 241 1 0 178 1 0 118 14 1 145 2 0 48 2 0 184 0 8 7 10 4 145 chain 21229 chr4 191154276 + 124756171 124756490 AluYk4 311 + 8 302 123111 75 18 0 151 14 16 25 7 5 15 7 0 7 chain 7703 chr4 191154276 + 124781832 124781936 L1PA8 5853 + 5750 5853 172916 10 2 1 92 chain 5202 chr4 191154276 + 124786931 124786994 Tigger3b 1229 + 31 94 193008 63 chain 10402 chr4 191154276 + 124787040 124787165 Tigger3c 601 + 344 469 158688 125 chain 22636 chr4 191154276 + 124811961 124812249 MER41-int 2638 + 2347 2636 117395 179 0 1 109 chain 24144 chr4 191154276 + 124832091 124832375 AluY 311 + 28 311 109501 105 1 0 178 chain 50058 chr4 191154276 + 124853188 124853995 L1PB1 5432 + 4643 5424 58978 450 0 1 7 1 4 9 3 0 22 1 0 11 27 20 54 4 1 10 5 4 45 1 0 7 11 8 8 3 0 7 9 0 16 24 19 24 1 0 21 0 9 4 1 0 16 1 0 4 chain 188527 chr4 191154276 + 124891404 124894685 L1PA5 6144 - 0 5478 20192 145 1 2 524 0 2 93 1 0 160 4 9 692 1008 3199 240 4 3 409 chain 16887 chr4 191154276 + 124894685 124894878 L1PA5 6144 + 5938 6131 135871 193 chain 516815 chr4 191154276 + 124929545 124935694 L1PA6 6164 - 2 6163 5509 763 1 0 83 0 4 598 7 1 27 6 7 976 0 1 917 1 0 107 4 0 352 1 2 33 0 1 76 0 2 127 0 1 417 2 1 192 8 9 224 0 8 44 0 3 333 0 2 284 1 0 32 0 15 10 15 0 416 0 1 92 chain 70718 chr4 191154276 + 124943586 124944343 L1HS 6032 - 5 762 47962 757 chain 78567 chr4 191154276 + 124944343 124945181 L1HS 6032 + 4442 5280 44235 838 chain 267874 chr4 191154276 + 124962272 124966168 L1PA10 4194 - 92 4018 15300 20 5 0 10 4 5 38 8 0 114 0 7 90 0 4 78 0 2 338 3 0 267 24 9 163 0 1 149 3 4 147 0 1 13 7 17 334 4 3 263 7 11 83 7 10 66 25 22 6 0 1 12 0 4 50 1 0 244 8 15 104 0 11 43 14 10 102 1 0 4 1 2 77 7 3 71 0 1 24 0 1 168 2 0 183 0 85 122 4 2 85 18 7 16 1 0 5 6 1 11 2 0 24 82 53 15 2 0 21 1 0 6 5 4 8 2 0 9 23 17 5 3 0 15 3 0 10 chain 474542 chr4 191154276 + 124993761 124999874 L1PA8A 6298 + 41 6290 7896 15 1 0 11 24 13 8 10 0 15 3 0 16 3 0 13 5 0 16 8 10 12 1 0 7 1 0 9 1 193 28 2 0 21 10 7 76 1 0 552 4 5 36 34 36 166 0 7 7 14 7 104 0 1 177 3 2 159 0 1 456 7 0 274 1 0 30 0 1 185 1 2 269 5 3 189 0 1 139 13 5 39 4 2 25 3 1 26 0 4 77 0 1 643 0 1 432 6 8 241 1 0 146 0 1 270 5 0 243 2 0 176 1 0 408 1 0 110 6 5 106 chain 3858 chr4 191154276 + 125015251 125015309 MER58A 224 + 47 113 209475 39 6 14 13 chain 546353 chr4 191154276 + 125046980 125053118 L1PA4 6152 - 1 6152 1901 63 0 9 1038 0 2 319 0 1 388 0 1 959 2 1 166 0 1 3203 chain 6684 chr4 191154276 + 125063480 125063608 MLT2A1 477 - 0 144 179801 8 0 4 26 14 0 19 9 35 52 chain 110580 chr4 191154276 + 125074061 125075241 L1HS 6032 - 992 2172 34060 1180 chain 93903 chr4 191154276 + 125075241 125076242 L1HS 6032 + 5031 6032 38380 1001 chain 286650 chr4 191154276 + 125089358 125093368 L1PA10 4194 + 186 4161 14248 15 62 49 21 2 0 15 1 0 8 39 15 4 1 0 24 0 1 4 9 6 5 1 0 10 1 0 11 29 20 9 1 0 84 2 0 29 0 1 326 0 1 23 0 1 31 5 6 178 1 2 348 0 1 54 4 5 245 1 0 224 6 16 133 0 1 4 1 0 108 2 1 20 5 3 368 7 7 40 2 1 40 1 5 6 0 1 346 22 39 30 3 0 8 5 0 596 0 2 70 0 1 4 1 0 97 0 1 46 0 1 125 12 8 26 3 0 34 1 0 11 chain 7201 chr4 191154276 + 125115637 125115716 L1PA5 6144 - 4 83 176061 79 chain 20231 chr4 191154276 + 125138309 125138539 L1PA4 6152 - 757 991 126178 87 0 4 143 chain 66567 chr4 191154276 + 125138539 125139288 L1PA4 6152 + 5394 6143 49842 749 chain 145365 chr4 191154276 + 125152692 125154270 L1PA3long 6157 - 759 2337 25273 1578 chain 68042 chr4 191154276 + 125154270 125155020 L1PA3long 6157 + 5404 6155 49085 192 0 1 558 chain 74878 chr4 191154276 + 125161319 125162222 L1P3 4156 + 3240 4139 46075 311 1 0 556 2 0 7 2 1 24 chain 474826 chr4 191154276 + 125190533 125196136 L1PA6 6164 - 2 5622 7885 95 16 19 655 0 2 52 0 1 23 1 0 672 1 0 269 0 4 250 0 1 444 0 1 152 0 1 304 4 1 26 0 1 86 4 0 271 0 7 151 2 1 186 0 1 156 1 2 114 0 2 383 9 10 354 1 0 46 0 1 362 0 1 513 chain 19089 chr4 191154276 + 125202908 125203131 L1PA2 6032 + 5687 6028 129847 167 0 118 56 chain 154432 chr4 191154276 + 125206941 125208631 L1PA3long 6157 - 314 2004 24052 1690 chain 24527 chr4 191154276 + 125208631 125208910 L1PA3long 6157 + 5876 6156 107397 133 0 1 146 chain 80723 chr4 191154276 + 125218878 125219796 L1PA4 6152 + 5226 6152 43298 78 0 4 826 1 0 7 0 5 6 chain 21127 chr4 191154276 + 125224018 125224295 AluSp 311 + 8 282 123462 31 13 9 72 0 1 161 chain 2600 chr4 191154276 + 125241776 125241840 MER58A 224 + 5 70 231697 13 23 24 28 chain 4700 chr4 191154276 + 125252105 125252161 MER5A 189 + 112 168 198535 56 chain 102911 chr4 191154276 + 125260025 125261313 LTR12C 1709 + 0 1709 36024 96 1 0 195 6 7 40 0 43 83 1 0 28 2 1 157 0 278 184 1 0 4 4 2 106 0 4 168 0 102 124 4 3 84 chain 507640 chr4 191154276 + 125282406 125288544 L1PA6 6164 + 0 6162 6355 371 33 40 89 11 10 24 0 1 319 0 1 576 0 5 404 1 10 36 2 3 108 0 1 208 6 8 114 1 2 343 2 1 269 10 5 236 6 7 83 0 1 976 2 1 403 0 1 77 0 1 403 12 12 166 1 0 49 0 1 797 chain 3317 chr4 191154276 + 125310433 125310498 L1PB1 5432 + 5360 5423 218634 10 1 0 11 0 1 11 1 0 11 6 5 14 chain 357614 chr4 191154276 + 125312626 125316549 L1PA3long 6157 - 0 3924 11414 3875 0 1 48 chain 111600 chr4 191154276 + 125327228 125328435 L1PA2 6032 - 1008 2215 33778 1207 chain 89668 chr4 191154276 + 125328435 125329421 L1PA2 6032 + 5045 6032 39735 834 4 5 148 chain 7313 chr4 191154276 + 125340316 125340399 BC200 147 - 39 122 175348 83 chain 7342 chr4 191154276 + 125373710 125373803 MSTA 426 + 30 123 175139 93 chain 76075 chr4 191154276 + 125382440 125383449 MER11A 1151 + 0 1144 45431 45 10 109 135 14 11 88 0 1 54 0 1 89 0 1 4 0 1 10 1 0 194 0 4 56 1 0 15 7 41 226 8 7 52 chain 17797 chr4 191154276 + 125385421 125385620 L1PA4 6152 + 5948 6148 133419 179 0 1 20 chain 415869 chr4 191154276 + 125392667 125397790 HERVL-int 5654 + 0 5647 9644 48 16 5 835 0 1 202 0 2 31 1 0 93 1 0 342 0 1 12 0 215 778 0 1 1071 4 0 34 0 10 363 5 0 517 1 0 235 0 309 291 51 59 192 chain 27450 chr4 191154276 + 125397797 125398210 MLT2A1 477 + 0 464 94819 142 8 9 18 0 4 30 4 3 44 11 24 111 15 49 30 chain 11391 chr4 191154276 + 125429667 125429802 MER50B 698 + 525 662 154741 50 0 2 85 chain 37065 chr4 191154276 + 125442618 125443059 LTR10F 562 - 0 562 73436 174 0 7 150 1 116 95 1 0 20 chain 54392 chr4 191154276 + 125443545 125444282 MER4E1 777 + 0 768 56103 26 1 0 67 0 14 20 19 0 8 0 18 311 4 5 33 9 17 22 1 9 115 0 2 101 chain 17873 chr4 191154276 + 125464522 125464737 AluYf4 310 + 91 293 133184 194 13 0 8 chain 14106 chr4 191154276 + 125470970 125471174 MER45B 1037 - 250 450 144197 130 1 6 39 9 0 25 chain 43055 chr4 191154276 + 125479336 125479887 MER41A 554 + 0 554 65349 396 1 3 80 0 1 74 chain 37800 chr4 191154276 + 125483950 125484469 MER41A 554 + 0 553 72418 165 14 56 226 23 15 91 chain 40958 chr4 191154276 + 125493879 125494468 MLT2A2 560 - 0 560 67966 345 34 42 112 37 0 61 chain 18541 chr4 191154276 + 125498814 125499063 L1PA8 5853 - 0 245 131386 92 2 1 19 3 2 47 1 0 13 1 0 71 chain 472740 chr4 191154276 + 125504155 125510721 L1PA8A 6298 + 88 6291 7952 10 0 2 19 25 16 13 1 0 11 3 11 7 1 0 12 2 0 15 2 0 4 1 0 12 17 47 41 1 0 20 8 0 77 2 0 16 18 15 322 0 1 381 0 1 125 0 3 774 0 1 128 0 1 13 15 14 145 0 3 6 45 36 50 0 2 59 7 0 42 1 0 21 2 0 817 17 11 7 1 0 51 2 1 253 0 1 166 0 1 572 0 1 99 0 1 14 2 0 195 2 1 66 1 0 4 10 8 4 1 0 180 351 0 92 0 1 379 6 13 22 0 4 149 19 21 130 25 9 132 0 2 6 2 0 174 1 0 32 0 1 25 8 7 75 chain 8838 chr4 191154276 + 125519193 125519288 L1PA3long 6157 + 6061 6156 166447 95 chain 13450 chr4 191154276 + 125526446 125526614 MER4A1 472 + 0 168 146530 168 chain 542238 chr4 191154276 + 125533101 125539240 L1PA4 6152 - 12 6151 2465 1068 4 5 1128 0 1 99 3 2 40 3 0 117 1 0 384 1 2 116 0 1 307 0 3 2279 0 1 102 0 1 65 0 1 133 7 0 138 0 2 144 chain 24174 chr4 191154276 + 125539279 125539619 THE1C 375 + 2 335 109354 101 14 6 66 6 7 153 chain 80215 chr4 191154276 + 125571724 125572891 LTR12D 1347 + 0 1346 43499 242 10 11 10 1 12 6 4 0 16 9 41 73 56 0 71 1 0 38 0 192 23 1 0 84 1 2 41 1 10 54 0 10 73 12 3 10 4 0 27 1 0 32 2 1 264 chain 2761 chr4 191154276 + 125582343 125582408 MADE1 96 - 12 96 229313 19 22 41 24 chain 25519 chr4 191154276 + 125603229 125603506 AluYb9 318 + 40 317 102144 277 chain 30063 chr4 191154276 + 125612365 125612679 AluYb8 318 + 0 314 84618 314 chain 3901 chr4 191154276 + 125623600 125623717 MER5A1 166 - 1 127 208835 13 44 41 14 6 18 40 chain 5350 chr4 191154276 + 125643905 125643972 L1PB4 2604 + 2469 2536 191535 67 chain 82976 chr4 191154276 + 125644191 125645069 MLT1M-int 878 + 0 878 42347 878 chain 26724 chr4 191154276 + 125672104 125672483 L1PA8 5853 + 5429 5815 97245 91 0 1 43 1 0 29 4 15 70 12 10 52 2 1 19 1 0 55 chain 36884 chr4 191154276 + 125692937 125693509 L1PB2 3958 - 120 690 73677 63 12 11 11 7 5 15 0 3 51 1 0 62 1 0 79 1 0 34 0 13 40 1 0 11 2 0 66 10 0 11 0 3 38 17 15 39 chain 13537 chr4 191154276 + 125694357 125694569 L1PB2 3958 + 3137 3335 146224 87 0 4 29 27 11 39 2 0 28 chain 22708 chr4 191154276 + 125720719 125720992 AluY 311 + 39 303 117038 257 9 0 7 chain 72510 chr4 191154276 + 125732999 125734068 MER11A 1151 - 0 1151 47262 12 1 2 149 6 7 60 0 1 30 22 4 24 44 27 35 0 11 99 5 7 145 2 3 94 0 1 82 0 1 37 0 4 22 4 0 66 13 12 38 0 99 79 chain 286044 chr4 191154276 + 125750279 125754120 L1PB1 5432 - 19 3860 14284 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 21 2 1 6 8 0 5 1 0 14 1 0 15 10 11 17 8 7 61 2 0 10 17 12 13 1 0 5 1 3 12 3 0 9 2 3 274 1 2 100 0 3 102 0 1 246 0 5 30 2 1 13 5 0 138 6 17 66 0 1 116 0 1 254 2 0 8 5 8 452 0 1 381 8 8 32 1 0 24 1 0 222 1 0 95 4 3 238 0 1 12 1 0 47 8 18 338 0 2 270 chain 25627 chr4 191154276 + 125758911 125759264 THE1A 353 - 1 353 101596 58 0 2 72 20 18 198 1 0 4 chain 217294 chr4 191154276 + 125817650 125820176 L1PA5 6144 + 3599 6144 18041 476 4 6 118 2 0 432 0 5 204 0 1 424 0 2 23 1 5 149 0 5 361 0 1 79 1 2 252 chain 164177 chr4 191154276 + 125871250 125873110 L1PA5 6144 - 12 1869 22782 111 2 0 335 1 0 1411 chain 2849 chr4 191154276 + 125898675 125898744 Tigger9b 617 - 405 494 227863 19 25 45 25 chain 27906 chr4 191154276 + 125917618 125917918 AluYa5 310 + 4 299 93342 122 5 0 173 chain 4304 chr4 191154276 + 125946209 125946380 LTR40c 466 + 199 374 203171 27 106 110 38 chain 74006 chr4 191154276 + 125954340 125955406 MER11A 1151 + 0 1151 46509 35 5 6 24 1 100 63 1 0 63 7 3 77 19 21 48 0 1 97 5 6 140 5 6 120 0 26 26 43 0 58 0 1 14 1 2 30 1 0 16 0 1 156 0 1 6 1 0 4 chain 43210 chr4 191154276 + 125961745 125962315 MER41A 554 + 0 553 65162 206 29 11 5 0 1 330 chain 16590 chr4 191154276 + 125972047 125972275 L1PA7 6471 - 12 242 136693 7 0 1 128 15 16 78 chain 103264 chr4 191154276 + 125993947 125995542 L1PB1 5432 + 3991 5420 35934 636 1 2 74 0 2 51 1 14 333 149 2 9 1 0 24 2 0 9 1 0 11 5 1 10 2 0 48 6 4 10 6 5 41 7 6 13 3 0 5 1 0 12 9 0 8 31 26 23 1 0 21 1 0 13 1 0 16 chain 8090 chr4 191154276 + 126008944 126009039 LTR12C 1709 - 1609 1704 170543 95 chain 43183 chr4 191154276 + 126050220 126050743 L1PA7 6471 - 3 528 65194 7 4 0 224 0 4 96 0 1 76 1 2 115 chain 29434 chr4 191154276 + 126055359 126055702 L1PA5 6144 + 5807 6141 86924 41 9 0 293 chain 12072 chr4 191154276 + 126065226 126065365 L1PA5 6144 + 6003 6142 151889 139 chain 404484 chr4 191154276 + 126067563 126072742 L1PA8 5853 - 3 5745 9963 90 1 0 18 3 2 33 30 28 71 2 0 36 0 2 6 1 0 219 0 1 260 0 2 72 2 0 327 0 1 314 1 0 750 0 10 202 18 17 132 11 12 298 9 13 41 0 1 44 21 21 342 0 1 206 0 4 18 0 1 49 0 1 179 58 593 203 1 0 135 6 5 304 0 3 143 34 39 292 0 4 197 chain 28656 chr4 191154276 + 126083102 126083444 L1PA5 6144 - 0 345 90502 11 1 3 132 1 2 197 chain 20828 chr4 191154276 + 126093638 126093984 THE1B 368 - 18 368 124513 38 11 8 61 2 1 10 1 0 18 1 5 9 0 1 5 0 4 21 1 0 81 26 27 61 chain 20840 chr4 191154276 + 126096596 126096854 L1PA5 6144 - 2 255 124484 7 4 0 162 2 1 83 chain 101063 chr4 191154276 + 126112923 126114319 LTR12C 1709 + 0 1709 36496 256 40 42 40 0 43 83 8 10 13 4 5 49 0 1 197 0 2 18 0 196 65 7 9 42 0 47 106 0 4 73 4 6 168 8 16 121 14 13 51 0 4 29 chain 17551 chr4 191154276 + 126124042 126124304 Tigger1 2417 + 2122 2386 134122 86 1 0 25 5 6 17 2 0 79 6 10 41 chain 15688 chr4 191154276 + 126125113 126125391 LTR12 884 + 96 337 139306 42 0 25 23 25 0 18 39 0 18 2 4 111 chain 2310 chr4 191154276 + 126125221 126125260 LTR12 884 + 97 136 177553 39 chain 18380 chr4 191154276 + 126128402 126128645 L1PA7 6471 - 4 245 131845 6 4 0 150 5 6 23 0 1 55 chain 25230 chr4 191154276 + 126139155 126139531 THE1C 375 + 0 371 103590 61 24 22 32 8 5 57 1 0 9 0 1 35 0 1 127 1 0 21 chain 105997 chr4 191154276 + 126149984 126151308 LTR12C 1709 - 13 1709 35259 250 10 19 199 0 4 21 0 366 348 0 1 20 1 2 67 1 2 46 0 1 62 13 0 81 0 2 205 chain 22510 chr4 191154276 + 126151956 126152261 AluY 311 + 0 293 117982 64 1 6 51 1 0 11 0 1 139 9 1 13 9 0 7 chain 3901 chr4 191154276 + 126166696 126166742 Tigger5 388 - 164 210 208836 46 chain 24704 chr4 191154276 + 126170213 126170501 AluSg7 307 - 10 298 106412 288 chain 338093 chr4 191154276 + 126176828 126180556 L1PA3long 6157 - 11 3742 11952 6 1 0 378 1 4 372 1 3 81 1 0 1606 0 2 1003 0 1 113 3 0 162 chain 4135 chr4 191154276 + 126180556 126180604 L1P1 4361 + 752 800 205423 48 chain 3029 chr4 191154276 + 126202711 126202743 LTR12C 1709 + 837 869 224403 32 chain 8930 chr4 191154276 + 126220676 126220779 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chain 112508 chr4 191154276 + 126492210 126493534 L1PA5 6144 + 4823 6144 33534 40 0 2 1087 13 8 184 chain 9909 chr4 191154276 + 126514766 126514881 L1PA3long 6157 - 0 115 161028 115 chain 32267 chr4 191154276 + 126516336 126516774 MLT2A1 477 - 0 477 80413 32 0 1 14 4 45 179 2 3 21 0 1 11 6 3 8 2 0 159 chain 28919 chr4 191154276 + 126543410 126543718 AluYg6 310 + 1 308 89377 122 1 0 185 chain 90810 chr4 191154276 + 126572114 126573448 LTR12C 1709 - 0 1709 39353 39 38 52 23 0 10 7 10 0 22 1 0 9 1 0 319 0 4 28 0 366 121 43 2 215 2 1 26 0 1 38 15 9 18 6 3 15 0 43 43 6 10 8 4 0 277 chain 3841 chr4 191154276 + 126618591 126618638 L1PREC2 3366 + 2745 2790 209774 7 2 0 38 chain 14037 chr4 191154276 + 126633395 126633553 L1PA4 6152 + 5739 5897 144428 158 chain 21606 chr4 191154276 + 126665590 126665871 AluSg7 307 - 5 297 121754 86 6 16 66 0 1 123 chain 3473 chr4 191154276 + 126666659 126666700 LTR12C 1709 + 1019 1060 205231 41 chain 6483 chr4 191154276 + 126666700 126666790 LTR12C 1709 + 1019 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121 7 11 51 0 1 211 321 6 180 1 0 57 11 4 204 0 2 60 0 1 92 0 3 545 0 1 217 5 8 198 0 16 196 4 1 5 0 12 79 5 1 37 0 1 354 2 0 6 0 2 196 1 2 157 chain 17145 chr4 191154276 + 126820522 126820857 THE1C 375 + 0 347 135186 100 16 17 17 4 0 8 6 10 21 58 69 105 chain 29394 chr4 191154276 + 126836657 126836968 L1PA2 6032 - 6 317 87100 311 chain 44832 chr4 191154276 + 126850780 126851273 L1PA2 6032 + 5539 6032 63254 493 chain 20462 chr4 191154276 + 126936118 126936375 AluY 311 + 28 282 125724 103 0 2 107 2 0 15 3 0 27 chain 527045 chr4 191154276 + 126950906 126957243 L1PA4 6152 + 6 6143 4498 116 21 7 13 11 25 136 6 7 934 2 1 213 1 0 15 213 0 418 1 6 208 7 1 1058 1 2 715 1 0 616 0 1 141 0 1 66 0 1 68 0 6 523 0 4 590 1 0 167 0 3 75 chain 28763 chr4 191154276 + 126962146 126962575 MLT2A1 477 + 0 477 90052 6 0 1 38 0 7 118 4 1 10 0 1 5 3 4 12 0 1 181 35 75 17 chain 21232 chr4 191154276 + 126969031 126969573 L1PB1 5432 + 4984 5430 123092 30 0 2 16 0 7 59 4 5 13 73 0 27 1 0 13 2 0 3 2 0 9 16 14 38 2 1 15 1 0 28 57 44 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 2 1 20 3 0 5 chain 49451 chr4 191154276 + 126985032 126985621 LTR10C 591 - 0 591 59423 81 0 2 147 1 0 205 1 2 154 chain 10990 chr4 191154276 + 127043004 127043133 THE1C 375 + 235 363 156234 115 1 0 13 chain 43321 chr4 191154276 + 127051903 127052403 MER9a3 513 + 0 513 65008 129 4 17 367 chain 231589 chr4 191154276 + 127052980 127055769 HERVK9-int 4720 + 134 4718 17226 1044 0 185 70 5 7 56 0 924 130 0 2 235 0 679 10 0 1 636 0 1 15 3 2 317 7 6 49 6 9 206 chain 43140 chr4 191154276 + 127055771 127056289 MER9a3 513 + 0 513 65243 19 5 0 156 0 1 294 6 5 38 chain 29003 chr4 191154276 + 127066338 127066771 LTR7Y 441 - 0 441 88970 117 0 1 79 68 84 57 9 0 103 chain 267821 chr4 191154276 + 127067996 127071268 HERVH-int 3825 - 0 3825 15304 225 0 2 260 8 218 31 0 3 5 9 11 622 1 0 423 0 10 299 8 33 241 0 1 8 0 1 650 0 3 14 0 2 2 0 1 61 2 1 26 4 42 11 1 0 15 28 0 24 2 1 9 1 0 29 0 56 49 5 237 199 chain 28533 chr4 191154276 + 127071268 127071698 LTR7Y 441 - 0 441 91034 68 1 2 108 0 3 28 56 72 57 9 0 103 chain 196000 chr4 191154276 + 127085073 127087331 L1PA5 6144 - 3 2263 19499 329 1 2 1125 0 1 52 5 4 136 0 1 610 chain 21673 chr4 191154276 + 127115601 127115879 L1PA5 6144 - 0 278 121491 145 4 0 6 8 12 115 chain 119074 chr4 191154276 + 127121624 127123009 LTR12C 1709 - 0 1709 31380 481 0 4 116 1 0 33 0 320 459 1 2 294 chain 230082 chr4 191154276 + 127125938 127128709 L1PA7 6471 - 4 2787 17303 612 15 16 135 0 1 82 1 0 7 1 0 596 1 0 4 0 1 405 0 2 118 0 1 264 0 1 162 5 14 44 1 0 318 chain 159543 chr4 191154276 + 127140210 127142002 L1PA3long 6157 + 4345 6142 23392 584 0 1 358 0 4 15 6 8 348 2 0 479 chain 17588 chr4 191154276 + 127172200 127172407 L1PA2 6032 - 0 205 134030 5 2 0 200 chain 24381 chr4 191154276 + 127193225 127193507 AluSc 308 - 17 299 108188 282 chain 61534 chr4 191154276 + 127284464 127285203 LTR17 781 + 12 773 52098 109 0 9 169 10 0 26 1 2 393 1 23 30 chain 320688 chr4 191154276 + 127299311 127303010 L1P1 4361 - 20 3729 12569 12 2 1 23 1 0 157 1 0 645 1 0 1196 2 0 5 0 1 91 0 3 791 1 6 576 0 7 195 chain 35433 chr4 191154276 + 127347557 127348155 L1MA2 4263 - 158 741 75637 17 36 30 59 0 1 12 32 30 150 3 0 52 6 7 19 11 14 52 1 0 77 4 0 12 4 0 51 chain 8995 chr4 191154276 + 127352156 127352559 MSTA 426 - 2 400 165626 58 5 0 45 265 265 30 chain 4134 chr4 191154276 + 127357682 127357731 L1MB1 2102 - 95 144 205444 49 chain 36448 chr4 191154276 + 127385996 127386549 MLT2A2 560 - 0 560 74298 20 26 24 90 2 0 9 0 11 94 12 13 91 26 25 183 chain 9688 chr4 191154276 + 127397945 127398067 MER50 708 - 24 147 162159 12 0 1 110 chain 12312 chr4 191154276 + 127402960 127403116 L1PA5 6144 + 5977 6132 150968 13 8 7 135 chain 6076 chr4 191154276 + 127411722 127411917 LTR12C 1709 + 873 1068 184609 54 106 106 35 chain 7202 chr4 191154276 + 127411941 127412037 LTR12C 1709 + 654 909 176057 46 0 159 50 chain 46992 chr4 191154276 + 127417658 127418228 L1P3 4156 + 3563 4135 61219 5 0 3 91 0 1 394 0 1 50 2 0 8 1 0 19 chain 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173 7 11 193 chain 262768 chr4 191154276 + 127475884 127478990 L1PA6 6164 + 3031 6154 15550 152 7 8 140 1 0 199 1 0 166 1 0 444 7 21 204 0 4 111 0 2 1350 1 0 322 chain 115007 chr4 191154276 + 127488085 127489365 L1PA3long 6157 - 0 1279 32793 770 1 0 509 chain 40102 chr4 191154276 + 127509127 127509614 L1PA7 6471 + 5979 6464 69179 152 0 1 322 3 0 10 chain 9595 chr4 191154276 + 127537020 127537183 L1MA6 2487 + 2108 2256 162618 20 0 1 98 30 14 15 chain 5144 chr4 191154276 + 127573239 127573305 Tigger3d 321 + 1 69 193621 43 0 2 23 chain 494301 chr4 191154276 + 127590904 127596878 L1PA6 6164 + 0 6162 7151 369 0 8 18 19 17 88 11 10 205 0 1 854 3 11 146 3 4 594 0 1 147 0 15 530 0 132 34 5 6 122 0 1 587 2 1 444 5 18 415 1 0 344 0 1 44 0 5 70 0 1 305 0 1 48 1 0 135 0 7 263 20 20 125 6 4 11 chain 13344 chr4 191154276 + 127620058 127620244 MER44A 345 + 156 343 146918 95 8 9 83 chain 53749 chr4 191154276 + 127673309 127674004 MER50 708 - 12 708 56506 194 1 0 135 3 2 254 0 2 55 9 10 44 chain 7725 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191154276 + 127795033 127795097 LTR12C 1709 - 991 1055 191262 64 chain 23904 chr4 191154276 + 127813122 127813418 AluY 311 + 14 303 110885 112 7 0 177 chain 231005 chr4 191154276 + 127840263 127843133 L1PA7 6471 + 3561 6468 17253 66 3 0 5 0 3 150 12 11 40 1 0 92 5 15 14 9 10 232 0 1 57 1 2 59 0 3 258 0 3 1044 0 6 37 0 1 38 1 0 356 2 1 241 9 10 83 0 14 55 chain 56496 chr4 191154276 + 127843542 127844462 LTR12D 1347 + 405 1224 54853 131 0 31 18 122 2 91 24 0 15 0 18 292 24 20 26 4 3 30 1 0 142 chain 2073 chr4 191154276 + 127843701 127843775 LTR12D 1347 + 594 668 143210 74 chain 71223 chr4 191154276 + 127846195 127847041 L1PA8A 6298 - 901 1753 47749 293 1 0 4 0 7 548 chain 72877 chr4 191154276 + 127847041 127847941 L1PA8A 6298 + 5383 6284 47081 694 0 1 105 3 0 5 7 10 86 chain 561503 chr4 191154276 + 127849410 127855439 L1PA2 6032 + 0 6029 303 6029 chain 16079 chr4 191154276 + 127934599 127934837 L1PA16 3655 + 3319 3556 138118 21 1 0 73 9 10 16 10 9 108 chain 551182 chr4 191154276 + 127941723 127947710 L1PA2 6032 + 1 6027 1289 681 0 3 5277 0 36 29 chain 27913 chr4 191154276 + 127947710 127948048 L1PA3long 6157 + 5818 6157 93313 95 1 0 82 14 16 146 chain 540588 chr4 191154276 + 127983717 127989756 L1PA3long 6157 - 0 6157 2722 1060 28 8 1144 0 1 581 0 6 2451 1 129 15 0 1 276 1 2 330 0 1 152 chain 204127 chr4 191154276 + 127996438 127998937 L1P3 4156 - 1643 4141 18916 281 0 1 857 1 2 512 1 0 111 1 0 140 1 0 94 1 0 264 1 0 134 4 5 62 2 3 32 chain 48832 chr4 191154276 + 127999025 127999615 L1PA7 6471 + 5877 6468 59854 259 5 6 326 chain 314144 chr4 191154276 + 128010367 128014945 L1PA11 4918 + 37 4629 12847 5 2 0 74 1 0 12 2 0 50 1 0 35 11 17 120 0 3 61 0 2 143 14 18 14 0 2 94 1 0 43 18 15 234 13 14 56 27 0 19 17 7 128 1 0 15 0 32 170 4 8 139 0 3 115 0 1 13 0 1 115 4 3 245 0 4 38 0 4 57 60 53 26 1 0 3 2 0 12 17 22 35 14 15 381 0 1 227 1 27 587 1 9 22 11 9 741 3 0 52 11 14 73 2 0 10 7 6 17 4 0 9 31 22 11 78 61 18 chain 211241 chr4 191154276 + 128028320 128031639 L1PA13 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128130691 L1PA8 5853 - 4 2408 20349 86 6 5 10 0 1 6 6 5 41 0 1 5 13 11 62 0 1 5 2 0 46 1 0 206 4 5 250 9 8 86 2 0 3 2 0 941 1 5 67 0 2 535 0 1 10 chain 242789 chr4 191154276 + 128142509 128145612 L1PA8A 6298 - 7 3048 16622 133 2 1 44 0 1 621 1 4 333 5 1 78 1 0 191 1 0 204 0 2 105 6 7 211 0 4 275 9 0 78 2 0 109 0 1 16 0 1 58 1 2 366 0 4 104 16 0 19 46 0 68 chain 151431 chr4 191154276 + 128147134 128148813 L1PA4 6152 - 470 2175 24404 1100 0 26 45 5 0 511 0 5 18 chain 41298 chr4 191154276 + 128148813 128149278 L1PA4 6152 + 5677 6143 67535 140 1 2 324 chain 82294 chr4 191154276 + 128175049 128176047 L1PA7 6471 - 3 1021 42626 66 0 8 261 5 6 423 1 4 86 1 0 11 1 5 124 0 5 19 chain 252599 chr4 191154276 + 128183487 128186388 L1P2 5180 - 269 3175 16098 119 0 1 265 0 1 637 0 1 577 0 1 100 5 4 996 0 2 202 chain 57680 chr4 191154276 + 128186389 128187053 L1PA5 6144 + 5476 6144 54146 170 0 1 250 1 3 46 0 1 197 chain 365637 chr4 191154276 + 128193146 128197460 HERVK9-int 4720 - 84 4385 11218 482 0 1 1084 0 1 705 0 4 222 1 0 506 0 1 401 1 2 5 2 0 73 8 7 295 0 1 54 19 0 238 1 3 26 1 0 190 chain 13085 chr4 191154276 + 128207596 128207737 L1PA2 6032 + 5891 6032 147899 141 chain 27282 chr4 191154276 + 128214327 128214685 L1PA8 5853 - 0 351 95330 92 2 1 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 62 chain 237667 chr4 191154276 + 128220028 128223670 L1PB1 5432 + 1786 5422 16896 294 16 16 216 57 66 65 17 17 31 5 1 145 39 46 59 47 67 39 0 1 163 1 2 181 0 2 523 4 0 8 1 10 51 35 11 16 4 8 120 15 12 6 0 3 204 5 4 96 6 7 352 3 0 15 0 1 150 0 8 168 2 0 128 5 4 11 5 4 21 8 6 14 5 1 9 3 1 9 20 0 42 3 2 15 8 7 36 1 0 10 29 18 14 11 0 7 0 8 9 13 31 15 1 0 12 1 0 18 chain 62466 chr4 191154276 + 128233315 128234078 L1PA7 6471 - 1 761 51691 458 0 2 17 25 20 263 chain 118993 chr4 191154276 + 128262741 128264358 L1PB1 5432 + 3490 5106 31415 238 3 0 260 17 0 60 14 19 242 0 10 169 3 0 141 6 1 89 9 13 261 4 5 26 0 3 52 0 4 23 chain 36388 chr4 191154276 + 128270340 128270973 L1PA14 3548 + 2869 3485 74379 51 2 0 18 3 1 14 2 0 26 0 1 21 2 0 4 2 0 64 16 1 47 4 0 14 2 0 6 1 0 84 1 0 44 1 18 45 18 13 35 18 29 10 1 0 40 6 0 10 1 0 20 chain 29119 chr4 191154276 + 128293959 128294336 THE1C 375 + 0 375 88460 121 3 0 63 1 2 189 chain 146217 chr4 191154276 + 128300907 128302782 LTR12C 1709 + 0 1709 25129 309 0 1 4 1 0 212 10 4 307 161 0 274 1 0 5 3 1 107 0 4 481 chain 13825 chr4 191154276 + 128301751 128301911 LTR12C 1709 + 837 997 94455 160 chain 15459 chr4 191154276 + 128322738 128323009 MLT2B1 522 + 10 291 140027 56 2 0 74 24 23 26 1 0 21 10 20 31 6 10 20 chain 292100 chr4 191154276 + 128348235 128352114 L1PB1 5432 + 1569 5424 13891 26 2 8 110 0 4 98 8 0 257 14 15 406 7 0 349 3 0 93 0 4 425 0 1 363 1 4 219 6 5 29 0 1 277 0 4 24 0 1 325 5 4 11 4 0 82 1 0 120 11 14 201 3 4 20 2 0 30 13 0 14 52 60 43 20 18 42 1 0 31 9 0 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 16 1 0 4 chain 15087 chr4 191154276 + 128353489 128353681 L1PA4 6152 + 5969 6151 141066 28 7 0 149 3 0 5 chain 33169 chr4 191154276 + 128355378 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chain 52799 chr4 191154276 + 128417975 128418685 LTR12 884 - 15 884 57133 386 29 30 18 0 1 57 2 0 33 9 169 150 1 0 25 chain 23876 chr4 191154276 + 128432192 128432541 LTR7 482 - 0 482 111044 49 12 14 127 0 31 36 0 1 13 1 11 36 6 95 69 chain 286089 chr4 191154276 + 128434320 128437906 HERVH-int 3825 - 0 3825 14281 458 39 249 214 1 26 777 24 29 292 0 1 20 0 1 181 5 0 147 10 0 54 0 1 238 0 4 100 0 1 253 1 0 79 1 0 44 0 37 15 29 0 24 1 0 9 1 0 25 0 1 15 1 0 45 10 12 106 2 3 30 2 1 333 chain 22224 chr4 191154276 + 128437920 128438257 LTR7 482 - 12 482 119242 36 13 15 127 0 31 36 0 1 13 1 11 17 0 51 17 10 48 67 chain 48335 chr4 191154276 + 128450980 128451542 LTR10C 591 + 0 562 60215 562 chain 187932 chr4 191154276 + 128451549 128453614 L1PA3long 6157 - 8 2073 20246 2065 chain 26435 chr4 191154276 + 128474343 128474715 THE1C 375 + 0 375 98287 108 7 8 9 3 0 58 12 12 114 0 6 34 1 0 26 chain 3703 chr4 191154276 + 128480735 128480776 MER52D 1964 + 1157 1198 211898 41 chain 26964 chr4 191154276 + 128483975 128484419 MLT2A2 560 - 0 560 96394 147 3 112 74 68 67 41 2 10 109 chain 25146 chr4 191154276 + 128509661 128509957 AluY 311 + 0 303 104019 132 0 1 49 0 6 115 chain 551447 chr4 191154276 + 128510085 128516117 L1PA2 6032 + 0 6032 1259 256 1 0 454 1 0 1488 1 0 1351 0 2 1954 0 1 526 chain 19118 chr4 191154276 + 128519637 128519855 L1PA5 6144 - 1 219 129773 218 chain 3649 chr4 191154276 + 128531654 128531695 L1MC4 1079 + 566 607 212804 41 chain 42413 chr4 191154276 + 128550902 128551560 MER41B 635 - 0 635 66131 39 0 2 81 0 1 44 1 0 79 8 9 14 27 27 65 50 22 125 0 1 43 4 5 78 chain 553898 chr4 191154276 + 128571375 128577400 L1PA2 6032 - 0 6028 960 5 2 0 285 0 3 465 0 3 1380 1 0 3887 chain 91926 chr4 191154276 + 128591761 128593123 L1PB4 2604 + 1233 2552 38989 71 1 0 41 4 0 9 1 0 34 0 2 336 1 0 53 25 27 59 3 1 124 0 3 144 0 1 4 1 0 144 16 18 21 1 0 52 5 1 16 57 17 70 0 2 69 chain 558445 chr4 191154276 + 128597765 128603911 L1PA3long 6157 + 0 6157 458 793 0 1 1532 1 0 1676 0 3 1873 0 9 253 1 0 17 chain 205375 chr4 191154276 + 128612771 128615670 L1PB1 5432 - 10 2905 18833 18 1 0 13 1 0 15 11 10 20 2 0 14 9 6 14 31 20 10 1 0 45 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 15 38 20 36 1 6 45 0 2 93 0 4 104 0 9 178 3 0 95 23 27 17 0 2 125 1 0 4 0 1 58 1 0 183 1 0 12 5 11 61 0 4 47 2 0 250 0 8 43 0 1 498 0 2 235 0 1 352 0 3 59 chain 19688 chr4 191154276 + 128619352 128619593 AluY 311 + 17 258 128135 115 0 1 112 1 0 13 chain 292471 chr4 191154276 + 128639571 128643571 L1PA10 4194 - 33 4013 13865 11 1 0 34 3 0 4 1 0 559 0 3 536 0 2 5 7 5 191 8 9 127 0 4 21 3 1 19 0 1 549 1 0 61 0 4 177 0 4 13 3 1 20 0 3 22 17 18 108 0 2 176 6 5 362 0 3 122 4 5 208 1 6 114 53 57 97 11 13 74 1 0 10 4 0 8 8 13 18 1 0 21 2 0 6 1 0 5 55 30 8 1 0 15 3 1 20 1 0 9 1 0 9 22 16 10 2 0 7 3 0 12 2 0 6 chain 47493 chr4 191154276 + 128667846 128668702 L1PA14 3548 - 63 871 60843 20 1 0 10 6 0 41 1 0 6 11 10 5 1 0 15 4 2 34 5 1 9 1 0 111 1 0 84 1 0 6 2 0 11 17 13 102 2 0 5 30 38 9 2 0 14 3 1 163 64 40 47 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L1PA3long 6157 + 1 6153 6296 93 0 526 1002 0 6 698 1 0 851 2 0 2280 1 3 543 7 0 150 chain 17139 chr4 191154276 + 128786869 128787060 L1PA4 6152 + 5810 6001 135206 191 chain 13336 chr4 191154276 + 128787064 128787209 L1PA4 6152 + 6006 6151 146949 145 chain 54471 chr4 191154276 + 128787225 128788042 L1PB 1623 + 791 1576 56050 128 0 1 32 0 1 92 0 4 256 3 0 120 0 1 20 1 0 7 2 1 28 10 6 14 4 0 22 55 29 23 chain 10064 chr4 191154276 + 128789610 128789842 L1PB1 5432 + 5117 5319 160250 21 8 6 12 7 3 9 2 0 52 2 1 15 1 0 43 10 1 16 2 0 6 15 6 11 chain 465063 chr4 191154276 + 128820399 128826778 L1PA7 6471 - 5 6456 8216 7 2 0 137 9 10 40 316 0 103 1 5 141 3 0 11 1 0 391 2 1 47 0 1 113 0 4 242 0 1 17 0 4 979 0 2 208 0 37 152 1 5 201 0 1 28 1 6 75 1 0 392 13 0 9 9 25 222 0 3 19 5 7 62 11 19 82 0 1 23 0 1 465 0 4 594 21 12 473 0 1 18 0 21 175 1 76 11 2 3 42 6 16 12 23 37 40 141 339 82 16 15 181 chain 25498 chr4 191154276 + 128833203 128833561 Tigger3c 601 - 31 382 102233 236 10 9 5 0 1 21 10 3 76 chain 9175 chr4 191154276 + 128835184 128835332 L1MA4 2864 - 189 350 164679 28 14 4 10 1 24 95 chain 35308 chr4 191154276 + 128845034 128845507 L1P3 4156 - 81 531 75686 65 0 4 99 17 0 15 3 11 214 18 0 42 chain 159932 chr4 191154276 + 128845507 128847382 L1PA7 6471 + 4570 6461 23346 19 0 1 365 1 0 666 0 3 575 0 4 221 7 16 21 chain 5129 chr4 191154276 + 128857122 128857188 MER53 195 + 0 70 193795 23 0 4 43 chain 23422 chr4 191154276 + 128859470 128859750 AluY 311 + 14 295 113517 118 0 1 10 0 3 7 3 0 142 chain 19646 chr4 191154276 + 128874377 128874611 AluSp 311 + 16 250 128261 234 chain 121673 chr4 191154276 + 128884535 128885956 LTR12C 1709 - 0 1709 30489 74 1 0 172 0 8 170 1 3 54 0 4 106 2 0 5 2 1 85 0 278 749 chain 24477 chr4 191154276 + 128889095 128889370 AluYc3 301 + 1 277 107669 119 1 2 155 chain 19832 chr4 191154276 + 128906905 128907181 AluSc 308 + 29 292 127704 89 5 0 31 22 14 129 chain 21287 chr4 191154276 + 128921033 128921355 THE1B 368 - 19 368 122911 33 0 3 25 2 1 4 0 1 39 35 45 30 1 0 113 0 15 40 chain 26241 chr4 191154276 + 128932305 128932602 AluYf5 307 - 11 307 99049 36 1 0 260 chain 26372 chr4 191154276 + 128935132 128935436 AluSp 311 - 6 310 98525 304 chain 22133 chr4 191154276 + 128943132 128943391 L1PA6 6164 + 5903 6162 119655 259 chain 9894 chr4 191154276 + 128963621 128963757 L1PA8 5853 + 5713 5847 161100 27 2 1 19 2 1 86 chain 113579 chr4 191154276 + 128967918 128969277 LTR12C 1709 - 16 1709 33206 103 1 11 64 0 4 170 9 8 105 0 4 106 3 1 5 0 318 357 0 1 436 chain 41085 chr4 191154276 + 128974223 128974773 MLT2A2 560 - 0 560 67787 44 0 10 105 1 5 25 0 9 311 23 10 41 chain 52347 chr4 191154276 + 128975936 128977390 MER4E1 777 - 9 777 57401 161 1 5 24 35 31 80 336 5 45 5 4 122 3 4 37 5 3 37 363 0 48 0 10 152 chain 12032 chr4 191154276 + 128983923 128984074 L1PA4 6152 + 5995 6152 152063 82 3 0 16 0 4 44 0 5 6 chain 21143 chr4 191154276 + 129001141 129001436 AluSp 311 - 14 310 123398 40 0 1 26 2 1 76 9 16 12 7 0 17 0 1 106 chain 152326 chr4 191154276 + 129003976 129005815 SVA_D 2077 - 4 2065 24298 531 0 225 97 1 0 112 0 1 53 0 1 4 1 0 11 0 2 29 5 4 10 1 0 35 55 15 25 2 0 15 2 0 142 16 53 145 0 1 266 1 0 232 0 7 12 10 7 26 chain 3911 chr4 191154276 + 129004866 129004921 SVA_D 2077 - 765 820 82007 55 chain 24624 chr4 191154276 + 129031583 129031848 AluYa5 310 + 37 298 106862 56 4 0 205 chain 9757 chr4 191154276 + 129130777 129130898 AluYc 301 + 171 294 161812 95 1 3 25 chain 556979 chr4 191154276 + 129134944 129140954 L1PA2 6032 + 0 6023 611 736 0 10 2397 0 2 1766 0 1 1111 chain 24525 chr4 191154276 + 129141035 129141328 AluSp 311 - 7 300 107409 293 chain 4125 chr4 191154276 + 129152394 129152449 Tigger3b 1229 + 549 610 205594 18 0 6 37 chain 28496 chr4 191154276 + 129166455 129166809 THE1A 353 + 0 353 91198 110 1 0 201 0 1 4 1 0 37 chain 206135 chr4 191154276 + 129167807 129170775 MER4-int 2692 - 3 2692 18781 169 0 1 4 1 0 41 311 0 197 0 1 261 1 0 64 2 0 189 0 20 55 0 6 187 1 2 39 2 1 171 14 13 140 0 1 141 0 1 194 0 13 52 4 1 268 0 1 328 0 1 8 0 12 7 15 1 59 6 4 25 1 0 11 chain 37739 chr4 191154276 + 129174881 129175360 MER4A1 472 - 0 472 72500 193 8 0 60 1 2 217 chain 19719 chr4 191154276 + 129181327 129181604 LTR2 463 + 190 463 128041 49 4 1 132 10 11 28 1 0 28 1 0 24 chain 268007 chr4 191154276 + 129183296 129187629 Harlequin-int 5206 + 125 3370 15293 90 0 4 75 2 1 10 0 2 62 3 1 309 1 0 255 0 1 547 0 1 859 0 1 219 6 5 670 1092 0 133 chain 2793 chr4 191154276 + 129187316 129187346 MER11B 1079 - 990 1020 228853 30 chain 40574 chr4 191154276 + 129187641 129188358 HERVE_a-int 7009 + 6304 6990 68475 4 0 1 80 4 3 41 1 0 32 1 0 11 1 0 15 1 0 5 2 0 7 1 0 37 1 0 21 5 4 41 9 7 26 7 5 55 2 1 9 2 0 26 3 0 54 3 1 27 1 0 30 10 7 12 0 2 23 2 0 32 55 49 18 chain 21187 chr4 191154276 + 129222218 129222595 L1MA8 2339 - 196 621 123253 24 22 0 17 0 3 86 46 117 56 4 0 122 chain 116328 chr4 191154276 + 129265365 129266670 L1PA5 6144 - 2 1301 32331 147 0 1 292 1 0 791 6 0 68 chain 28599 chr4 191154276 + 129289326 129289679 THE1A 353 - 0 353 90737 353 chain 129581 chr4 191154276 + 129289679 129291247 THE1A-int 1579 - 0 1579 28185 9 0 1 578 0 1 23 6 7 26 6 7 14 1 2 247 1 0 161 0 1 63 0 6 433 chain 28765 chr4 191154276 + 129291247 129291602 THE1A 353 - 0 353 90045 74 1 0 168 1 0 111 chain 23069 chr4 191154276 + 129299218 129299543 THE1D 372 - 0 372 115306 162 1 0 17 0 3 31 1 36 46 10 20 57 chain 7545 chr4 191154276 + 129303992 129304087 MADE1 96 + 0 96 173901 45 0 1 50 chain 58316 chr4 191154276 + 129318272 129319201 L1PB1 5432 - 10 911 53801 18 1 0 11 1 0 23 1 0 20 22 19 5 1 0 18 19 7 18 6 5 42 1 0 17 1 0 42 3 0 9 2 0 9 2 0 3 2 0 12 3 2 4 1 0 23 5 0 10 1 2 165 8 16 214 2 3 37 0 1 24 1 0 4 0 1 12 1 0 105 chain 252140 chr4 191154276 + 129326702 129330660 L1PBa 3878 - 140 3713 16121 22 2 1 89 0 1 405 3 0 54 3 12 16 10 9 80 0 1 137 0 2 5 2 0 9 5 6 181 1 0 4 2 0 6 23 0 9 1 31 243 12 22 462 310 0 305 0 3 54 0 3 31 14 34 55 0 2 252 26 27 178 4 3 76 0 1 8 0 13 36 0 5 16 0 3 17 19 23 133 0 3 124 1 0 67 1 0 109 0 2 64 224 71 48 chain 48863 chr4 191154276 + 129351873 129352661 L1MA2 4263 - 205 990 59831 63 40 39 30 1 2 10 12 13 35 9 10 46 4 1 6 0 2 5 2 0 89 0 3 32 15 14 73 5 1 18 1 0 57 1 3 107 2 1 125 chain 543404 chr4 191154276 + 129352661 129358798 L1PA4 6152 - 1 6145 2278 5 2 0 394 0 1 26 1 3 2266 0 1 820 0 1 244 0 4 73 1 0 1282 0 1 787 1 0 6 0 1 229 chain 26582 chr4 191154276 + 129399339 129399825 L1MA7 2200 - 149 616 97717 40 115 98 83 1 0 111 8 7 128 chain 124051 chr4 191154276 + 129406345 129408602 L1PA15 4387 + 2398 4326 29683 216 10 22 43 5 9 34 25 27 50 3 4 180 0 3 31 1 0 6 0 2 57 0 1 85 2 0 26 1 2 33 49 19 65 1 5 15 53 58 255 3 0 166 2 0 17 4 0 61 10 8 35 1 0 69 0 1 4 317 0 94 8 7 22 1 0 54 7 6 17 8 13 47 6 3 44 3 1 11 chain 9827 chr4 191154276 + 129450894 129451023 L1PB4 2604 - 58 197 161466 25 0 4 32 0 6 72 chain 534022 chr4 191154276 + 129451048 129457495 L1PA7 6471 - 1 6471 3700 185 0 1 153 1 0 16 3 0 5 2 0 483 0 4 150 0 9 123 2 1 256 1 0 406 0 4 803 4 0 929 0 1 303 1 2 608 1 2 739 19 38 35 0 4 163 0 2 298 0 5 165 3 0 104 1 0 63 10 0 151 2 0 5 14 15 32 12 11 196 chain 7667 chr4 191154276 + 129497961 129498056 MER34 540 - 445 540 173125 95 chain 6619 chr4 191154276 + 129498914 129498993 MER30 238 - 159 238 180312 79 chain 24920 chr4 191154276 + 129501242 129501527 AluSp 311 - 13 300 105220 21 0 2 264 chain 27867 chr4 191154276 + 129532859 129533285 MLT2A1 477 + 0 464 93466 168 9 6 20 1 0 7 0 3 54 9 16 111 10 46 7 4 0 26 chain 22988 chr4 191154276 + 129538285 129538569 AluY 311 + 0 291 115677 123 0 6 77 1 2 83 chain 25050 chr4 191154276 + 129541494 129541830 LTR12 884 + 131 531 104544 13 0 66 166 3 1 89 1 2 12 9 8 43 chain 9606 chr4 191154276 + 129547532 129547715 MLT1A1 405 + 190 382 162569 47 8 8 19 37 46 72 chain 29289 chr4 191154276 + 129562054 129562458 LTR7 482 - 6 482 87621 43 12 14 127 0 31 36 0 1 110 8 46 68 chain 287642 chr4 191154276 + 129563713 129567352 HERVH-int 3825 - 0 3825 14180 329 0 2 164 0 210 916 0 16 178 0 4 36 4 14 74 18 1 160 0 46 205 1 0 39 9 0 402 0 3 247 1 0 81 1 0 19 42 0 23 12 11 14 3 0 13 2 1 13 28 0 24 4 3 7 1 0 85 2 0 8 1 5 45 9 10 83 2 1 8 1 0 325 chain 29077 chr4 191154276 + 129567354 129567764 LTR7 482 - 0 482 88651 49 13 14 48 0 1 88 5 36 20 0 1 111 8 46 68 chain 21844 chr4 191154276 + 129568277 129568514 L1PA3long 6157 - 694 931 120839 237 chain 62549 chr4 191154276 + 129568514 129569213 L1PA3long 6157 + 5463 6157 51653 526 7 1 17 0 1 149 chain 3963 chr4 191154276 + 129575965 129576024 MER51A 677 - 447 497 207938 31 9 0 19 chain 98919 chr4 191154276 + 129593635 129595009 LTR12C 1709 + 0 1709 37046 21 0 9 10 12 3 295 19 62 64 8 9 179 0 278 143 0 47 87 24 0 17 11 4 306 11 10 77 16 14 74 chain 5410 chr4 191154276 + 129598911 129598972 LTR48 738 + 0 61 190889 61 chain 13653 chr4 191154276 + 129606308 129607673 MER50 708 - 22 585 145767 122 1157 355 33 0 1 5 1 0 47 chain 38557 chr4 191154276 + 129612178 129612640 LTR2 463 + 0 463 71357 360 14 15 88 chain 10682 chr4 191154276 + 129616782 129616926 THE1D 372 - 214 372 157483 26 0 4 49 7 17 62 chain 36831 chr4 191154276 + 129625103 129625557 LTR2 463 + 0 463 73761 127 0 3 91 0 5 68 0 1 168 chain 29380 chr4 191154276 + 129658342 129658746 MER48 407 + 0 407 87170 154 4 5 26 22 24 198 chain 47840 chr4 191154276 + 129662869 129663572 LTR12_ 688 + 0 688 60598 182 24 0 62 69 78 366 chain 8782 chr4 191154276 + 129671332 129671471 MER31B 477 - 9 152 166758 67 16 20 56 chain 2966 chr4 191154276 + 129686526 129686565 L1MC3 1789 + 1346 1384 225746 31 1 0 7 chain 24291 chr4 191154276 + 129743596 129743889 AluSp 311 + 11 297 108699 61 1 2 46 8 0 177 chain 5389 chr4 191154276 + 129798396 129798462 MIR 256 - 111 177 191092 66 chain 12520 chr4 191154276 + 129800141 129800291 L1PA5 6144 + 5992 6144 150164 138 1 3 11 chain 13644 chr4 191154276 + 129804539 129804715 L1PA7 6471 + 6288 6461 145801 166 3 0 7 chain 540734 chr4 191154276 + 129816706 129822828 L1PA4 6152 + 1 6143 2700 287 1 0 452 13 26 735 0 1 462 0 1 2700 1 0 639 0 4 226 3 6 458 1 0 4 0 1 140 chain 24491 chr4 191154276 + 129844326 129844620 AluSz 310 + 8 303 107589 153 0 1 141 chain 20079 chr4 191154276 + 129869247 129869514 AluSc8 310 + 39 308 126890 94 11 13 162 chain 39281 chr4 191154276 + 129870547 129870981 L1PA4 6152 - 12 446 70349 434 chain 29553 chr4 191154276 + 129881793 129882106 AluYb8 318 + 0 313 86406 313 chain 45131 chr4 191154276 + 129888303 129889095 L1PA15 4387 - 21 795 62893 10 1 0 28 6 2 10 2 0 46 39 36 17 2 1 9 6 2 20 1 0 8 9 10 24 14 13 26 1 0 172 8 10 32 2 0 54 0 6 6 17 11 163 1 0 58 chain 74624 chr4 191154276 + 129923717 129924598 L1PA7 6471 + 5585 6470 46199 36 0 3 772 4 5 69 chain 71302 chr4 191154276 + 129926543 129927323 L1PA3long 6157 + 5369 6149 47795 780 chain 3111 chr4 191154276 + 129932644 129932685 L1PA13 3608 - 120 160 222729 22 1 0 18 chain 540145 chr4 191154276 + 129944702 129950844 L1PA4 6152 + 0 6152 2800 117 1 0 4 0 1 279 2 1 178 1 0 118 7 0 10 12 5 3136 0 25 407 0 1 1019 0 1 832 1 0 18 chain 299550 chr4 191154276 + 129950859 129954661 L1PA8 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chain 49463 chr4 191154276 + 130002027 130002609 LTR14C 587 + 0 587 59416 351 8 13 223 chain 5375 chr4 191154276 + 130005668 130005756 L1PA13 3608 + 3355 3443 191248 8 0 3 25 8 5 47 chain 108394 chr4 191154276 + 130009849 130011176 L1PA7 6471 + 5151 6468 34595 420 15 12 37 9 8 216 6 0 624 chain 457044 chr4 191154276 + 130041615 130047522 L1PA8 5853 - 0 5812 8510 92 2 1 16 5 4 52 18 16 64 2 0 44 1 0 335 80 0 141 0 1 6 0 1 154 0 2 119 0 1 142 1 0 792 0 4 222 3 4 166 0 1 86 1 0 205 0 1 222 0 3 46 7 6 278 1 6 352 0 2 359 0 2 354 24 24 130 3 6 546 4 5 486 0 7 34 16 20 185 70 30 6 2 0 22 2 0 9 chain 74113 chr4 191154276 + 130052164 130053141 MER11A 1151 + 0 1147 46453 55 0 99 22 8 0 54 1 0 64 4 0 149 0 1 90 3 4 104 1 0 42 6 7 117 0 81 31 0 1 46 1 0 16 0 1 163 chain 13664 chr4 191154276 + 130053145 130053342 Tigger3b 1229 + 416 643 145731 87 1 19 20 0 2 28 4 14 57 chain 36729 chr4 191154276 + 130066044 130066589 LTR3B_ 500 + 0 500 73915 274 0 7 50 1 0 7 12 0 10 51 10 49 0 2 91 chain 3202 chr4 191154276 + 130084603 130084637 MER5A1 166 - 39 73 220917 34 chain 370447 chr4 191154276 + 130102763 130106937 L1PA4 6152 - 0 4189 11078 850 0 4 1176 0 1 148 0 6 285 0 4 392 1 0 109 1 0 592 0 2 620 chain 67056 chr4 191154276 + 130108482 130109225 L1HS 6032 - 4508 5249 49632 407 1 0 205 1 0 129 chain 9853 chr4 191154276 + 130116228 130116335 L1PA5 6144 - 12 119 161329 107 chain 14481 chr4 191154276 + 130138438 130138605 L1PA5 6144 + 5967 6134 142945 167 chain 47738 chr4 191154276 + 130176105 130176751 L1PA8 5853 - 0 643 60665 23 9 0 8 1 10 51 2 1 18 1 0 50 6 5 8 1 0 71 2 0 44 2 1 42 0 3 229 0 1 78 chain 451335 chr4 191154276 + 130208260 130213784 L1PA7 6471 - 4 5699 8725 565 11 16 30 0 3 231 2 0 150 0 4 135 2 3 85 0 1 225 2 0 70 3 2 95 5 9 97 8 9 59 0 4 838 0 1 49 0 1 75 2 1 59 0 1 26 0 1 136 3 2 76 0 9 156 4 0 6 8 12 399 0 1 120 5 6 413 0 140 267 1 3 306 10 9 215 8 5 429 0 2 138 chain 273914 chr4 191154276 + 130216528 130219482 L1PA2 6032 - 0 2954 14978 2954 chain 4029 chr4 191154276 + 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89 0 10 40 chain 27164 chr4 191154276 + 130590929 130591216 AluYb8 318 + 28 315 95706 287 chain 24527 chr4 191154276 + 130597266 130597613 THE1A 353 + 7 353 107394 98 31 30 218 chain 120194 chr4 191154276 + 130597613 130599177 THE1A-int 1579 + 0 1579 30985 13 0 1 171 0 9 8 9 0 252 25 27 183 1 0 47 3 5 215 0 9 422 15 8 126 0 1 59 0 8 15 chain 23506 chr4 191154276 + 130599177 130599507 THE1A 353 + 0 333 113094 106 8 7 24 0 4 30 1 0 6 6 7 149 chain 31853 chr4 191154276 + 130615829 130616184 L1HS 6032 + 5677 6032 81092 355 chain 531266 chr4 191154276 + 130636655 130642781 L1PA5 6144 - 0 6141 4047 14 1 6 124 4 6 382 0 1 305 11 14 583 0 9 474 1 0 464 5 3 294 0 1 305 1 2 2205 0 1 56 3 0 294 3 0 324 0 1 273 chain 61682 chr4 191154276 + 130642916 130643981 L1PA14 3548 + 2444 3485 52045 6 1 0 67 10 1 19 2 0 5 8 9 28 1 0 76 1 0 34 1 0 81 0 3 66 7 6 33 17 29 5 0 3 23 3 1 14 2 0 47 9 5 34 1 2 73 9 5 12 2 0 5 2 1 84 1 0 107 4 3 11 5 1 35 4 2 13 1 0 5 1 0 7 4 9 26 1 0 18 6 0 7 1 0 20 chain 29900 chr4 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245 1 0 221 0 5 1250 0 1 1385 chain 34924 chr4 191154276 + 130820935 130821385 LTR22A 463 - 0 456 76304 90 0 1 20 3 2 28 0 6 309 chain 21578 chr4 191154276 + 130839966 130840317 THE1C 375 + 0 375 121854 89 21 28 73 1 0 13 0 3 36 31 46 87 chain 314648 chr4 191154276 + 130865432 130869602 L1P3 4156 - 17 4156 12824 24 2 1 9 2 0 33 0 2 453 8 9 88 2 1 391 0 1 435 1 0 63 4 1 131 0 1 429 3 1 305 0 1 201 36 32 170 1 0 5 5 7 69 9 10 5 1 0 837 34 14 6 2 0 84 1 0 19 57 56 71 27 27 147 chain 22327 chr4 191154276 + 130878429 130878691 AluY 311 + 38 301 118787 94 0 1 168 chain 114185 chr4 191154276 + 130883224 130884481 L1PA2 6032 - 0 1257 33035 1257 chain 215280 chr4 191154276 + 130884481 130886840 L1PA2 6032 + 2425 4786 18147 143 0 1 1609 0 1 607 chain 3922 chr4 191154276 + 130891333 130891383 MER65C 458 - 408 458 208534 50 chain 143127 chr4 191154276 + 130933759 130935503 LTR12C 1709 + 0 1709 25635 141 7 13 337 1 2 344 1 0 53 1 0 118 41 0 103 1 0 6 2 0 100 2 0 7 0 4 282 0 2 197 chain 2857 chr4 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14 chain 4437 chr4 191154276 + 131011976 131012307 LTR12D 1347 + 652 1078 201498 46 260 355 25 chain 337027 chr4 191154276 + 131053553 131058734 L1PB1 5432 + 218 5420 11971 75 0 6 29 3 5 48 1 2 196 9 12 171 0 1 120 1 0 4 5 6 85 24 21 79 1 0 332 13 0 139 0 7 7 49 0 83 0 1 318 0 5 283 8 7 167 1 0 60 17 11 393 9 25 72 4 0 7 10 13 11 1 0 236 1 0 200 19 21 57 0 1 164 0 1 24 0 2 256 0 2 96 0 5 23 1 2 55 9 10 211 2 1 4 0 1 50 1 6 88 0 13 65 0 4 12 434 485 24 1 0 9 1 0 11 15 9 53 2 1 15 1 0 44 1 0 16 25 12 19 8 5 14 2 0 22 3 2 17 6 5 12 1 0 16 chain 77819 chr4 191154276 + 131080374 131081299 L1PA7 6471 + 5517 6447 44610 104 1 0 77 0 2 179 0 2 17 1 3 546 chain 21985 chr4 191154276 + 131098053 131098423 L1PB2 3958 + 3473 3838 120293 12 0 3 57 1 0 8 18 16 49 5 4 59 11 10 57 6 4 22 2 1 63 chain 109350 chr4 191154276 + 131127933 131129323 L1PA6 6164 - 5 1390 34356 137 1 0 4 15 2 302 1 0 395 15 13 37 9 14 36 7 8 278 0 6 153 chain 40783 chr4 191154276 + 131148141 131148636 MER9a1 513 + 0 513 68199 109 0 16 329 0 2 57 chain 11018 chr4 191154276 + 131164192 131164337 MER41B 635 + 0 148 156132 43 0 1 45 4 3 6 0 2 28 0 1 19 chain 21202 chr4 191154276 + 131164361 131164616 MER11B 1079 - 26 281 123208 255 chain 148066 chr4 191154276 + 131164730 131166495 L1PA6 6164 - 249 2045 24869 155 2 0 22 6 8 79 0 1 264 0 1 20 6 17 33 2 0 949 0 4 88 0 16 139 chain 33778 chr4 191154276 + 131246260 131246629 L1PA3long 6157 + 5786 6155 77973 369 chain 26899 chr4 191154276 + 131252515 131252870 MER57B1 401 - 0 359 96632 124 0 3 57 14 15 160 chain 5833 chr4 191154276 + 131261587 131261673 MLT1E3 631 - 0 84 186841 53 9 7 24 chain 3061 chr4 191154276 + 131322699 131322735 L1PA13 3608 - 3354 3390 223799 36 chain 29671 chr4 191154276 + 131346054 131346376 AluYb8 318 + 0 318 85953 126 4 0 192 chain 56502 chr4 191154276 + 131346869 131347488 L1PA4 6152 - 13 632 54851 619 chain 13401 chr4 191154276 + 131355506 131355744 MER4D1 891 + 567 794 146713 121 55 45 12 1 0 49 chain 485970 chr4 191154276 + 131357980 131364174 L1PA6 6164 - 2 6164 7524 31 3 0 325 0 1 94 11 0 16 0 1 153 7 8 98 1 0 110 5 10 637 1 0 29 2 0 84 1 0 4 5 6 379 0 1 404 2 1 28 0 1 34 8 0 13 12 0 7 1 3 153 0 1 253 0 1 59 6 1 26 0 1 434 0 1 198 0 1 215 17 6 87 0 26 38 33 6 357 3 0 350 17 18 83 0 1 551 0 17 231 1 0 120 8 0 449 chain 100490 chr4 191154276 + 131365031 131366133 L1PA3long 6157 + 5054 6157 36633 261 1 2 840 chain 8787 chr4 191154276 + 131373474 131373601 L1PA8 5853 - 6 129 166728 55 2 0 32 1 0 19 4 3 14 chain 357973 chr4 191154276 + 131376331 131381006 L1PA7 6471 - 1 5360 11401 339 1 0 429 0 2 72 8 7 204 0 1 84 0 287 54 5 1 7 1 0 4 0 1 410 8 509 219 5 4 215 9 10 10 5 6 70 1 0 22 0 1 402 0 4 89 0 1 41 183 58 270 2 4 529 0 2 339 4 0 6 11 25 442 13 0 10 2 18 96 0 1 54 chain 206930 chr4 191154276 + 131403077 131406407 L1PB1 5432 + 2058 5422 18722 144 0 1 4 3 13 118 1 0 151 9 0 330 2 1 10 6 0 11 5 6 35 3 6 41 0 4 65 1 0 9 0 4 7 5 1 130 0 1 11 24 24 25 2 0 32 3 0 62 8 309 77 14 18 22 1 8 41 21 11 201 7 8 145 0 1 400 2 1 53 0 1 27 2 0 476 299 59 6 2 0 52 18 16 43 4 3 13 33 22 10 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 14171 chr4 191154276 + 131414675 131415029 THE1B 368 - 2 368 143983 122 73 77 33 79 87 47 chain 15446 chr4 191154276 + 131430492 131430704 L1PA7 6471 + 6237 6468 140061 80 4 5 20 2 17 5 0 3 101 chain 30500 chr4 191154276 + 131433167 131433570 MLT2A1 477 - 0 477 83430 45 0 47 93 0 22 97 5 9 21 0 1 142 chain 16733 chr4 191154276 + 131445620 131446169 THE1B-int 1605 + 216 428 136305 144 337 0 68 chain 16767 chr4 191154276 + 131446183 131446398 THE1B-int 1605 - 1392 1605 136204 179 2 0 34 chain 18109 chr4 191154276 + 131464106 131464359 MER51A 677 - 0 252 132571 62 1 0 76 17 18 5 1 0 91 chain 3400 chr4 191154276 + 131472892 131473055 MLT1D 503 - 14 193 217070 26 60 74 19 38 40 20 chain 31561 chr4 191154276 + 131495876 131496308 MER4A1 472 - 0 453 81543 9 1 2 56 11 10 132 7 28 216 chain 8215 chr4 191154276 + 131515110 131515218 LTR49 580 + 470 578 169862 22 1 0 6 0 1 79 chain 33618 chr4 191154276 + 131531259 131531850 LTR24C 604 - 13 604 78214 22 1 2 61 38 38 25 40 40 12 12 19 4 0 1 24 26 18 321 1 0 4 chain 28021 chr4 191154276 + 131551603 131551924 L1PA3long 6157 + 5837 6157 92928 80 2 1 239 chain 159235 chr4 191154276 + 131563897 131565709 L1PA4 6152 - 1 1825 23435 147 2 0 5 1 0 4 0 4 93 1 0 293 0 8 295 0 4 971 chain 420174 chr4 191154276 + 131572145 131577681 L1PA8 5853 + 308 5853 9528 181 5 0 639 0 5 8 1 0 156 10 10 29 0 12 175 1 0 111 0 1 281 12 14 81 0 6 9 21 7 14 0 1 22 0 1 8 4 1 756 0 1 32 15 13 25 13 8 82 0 1 223 18 6 53 4 3 4 0 1 99 0 1 153 2 1 73 1 0 6 1 2 14 0 7 177 6 8 111 10 14 260 0 1 125 9 5 209 0 1 249 0 1 4 0 1 195 0 1 4 2 0 35 10 13 146 7 8 117 0 16 167 3 4 46 1 0 46 2 0 71 5 0 9 1 0 52 3 2 18 1 0 93 chain 4687 chr4 191154276 + 131583922 131583978 THE1B 368 + 312 368 198672 56 chain 77393 chr4 191154276 + 131604973 131606049 MER11B 1079 - 0 1079 44784 23 0 2 282 6 0 38 0 1 41 0 2 22 1 0 443 85 0 20 0 90 115 chain 4045 chr4 191154276 + 131607123 131607198 Tigger4a 237 - 7 82 206734 35 0 7 12 14 7 14 chain 19306 chr4 191154276 + 131631936 131632164 AluSc5 308 + 8 236 129224 228 chain 130058 chr4 191154276 + 131636312 131637769 L1PA5 6144 - 5 1468 28077 844 0 4 520 0 1 89 0 1 4 chain 41854 chr4 191154276 + 131637769 131638251 L1PA5 6144 + 4217 4701 66285 125 0 2 357 chain 104025 chr4 191154276 + 131654864 131656038 L1PA3long 6157 + 4989 6157 35728 167 0 1 844 8 1 155 chain 7264 chr4 191154276 + 131659515 131659737 MER52A 1651 + 1476 1651 175697 53 119 72 50 chain 9459 chr4 191154276 + 131683887 131683994 L1PA8 5853 + 5227 5334 163277 107 chain 26189 chr4 191154276 + 131683994 131684313 L1PA8 5853 + 5353 5679 99241 211 1 0 35 1 8 34 0 1 37 chain 3418 chr4 191154276 + 131684322 131684376 L1PA8 5853 + 5693 5740 216790 6 7 0 41 chain 7558 chr4 191154276 + 131684398 131684491 L1PA8 5853 + 5760 5853 173817 93 chain 320343 chr4 191154276 + 131688967 131692767 HERVH-int 3825 + 0 3825 12584 333 1 0 202 5 0 35 1 0 10 1 0 12 32 60 4 1 0 45 2 1 54 0 1 7 0 2 12 0 1 84 0 1 517 0 1 636 0 1 325 2 0 240 1 0 4 0 1 814 31 32 286 4 5 99 chain 21775 chr4 191154276 + 131694837 131695080 AluYb8 318 + 70 310 121115 62 2 0 122 1 0 56 chain 120973 chr4 191154276 + 131698333 131699816 L1PA7 6471 + 4969 6461 30702 652 1 0 26 0 11 35 2 1 277 0 1 57 8 9 400 2 1 13 1 0 9 chain 29779 chr4 191154276 + 131700608 131700923 AluYb8 318 - 3 318 85543 315 chain 61712 chr4 191154276 + 131703316 131705082 L1PB1 5432 - 29 923 52036 12 1 0 21 1 0 24 2 0 12 10 7 18 29 17 11 1 0 44 1 0 16 2 1 53 2 0 9 26 20 22 3 0 13 3 0 109 0 3 109 834 0 256 2 0 5 3 0 112 chain 444428 chr4 191154276 + 131764494 131769890 HERV9-int 5642 - 312 5642 8920 101 6 5 1648 0 1 187 3 0 206 0 13 293 0 1 868 6 8 334 0 2 556 4 0 24 80 0 279 10 9 79 0 4 108 9 8 584 1 2 10 chain 44319 chr4 191154276 + 131769918 131770506 LTR12_ 688 - 0 688 63807 155 0 103 192 0 4 31 24 0 52 0 18 108 1 0 25 chain 15677 chr4 191154276 + 131807600 131807801 MER30 238 - 3 207 139343 42 0 3 159 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1164 5 6 953 0 1 2135 chain 11266 chr4 191154276 + 132001829 132001969 FAM 185 + 8 148 155166 140 chain 24349 chr4 191154276 + 132012367 132012664 AluSx 319 + 3 300 108380 297 chain 25607 chr4 191154276 + 132046215 132046535 THE1B-int 1605 - 5 326 101695 63 0 1 257 chain 8018 chr4 191154276 + 132059205 132059293 L1PA5 6144 + 6049 6137 170942 88 chain 114959 chr4 191154276 + 132063408 132064694 L1PA4 6152 - 0 1296 32806 10 0 6 683 0 1 56 0 3 537 chain 68485 chr4 191154276 + 132064698 132065465 L1PA4 6152 + 4101 4868 49050 767 chain 17609 chr4 191154276 + 132067887 132068103 L1PA8A 6298 + 6064 6280 133969 216 chain 82124 chr4 191154276 + 132082992 132084048 MER11C 1089 - 16 1089 42713 8 0 1 144 1 0 54 0 1 127 0 1 38 7 9 252 1 2 50 1 0 65 0 4 59 7 16 242 chain 5209 chr4 191154276 + 132093625 132093764 MLT2B4 540 + 54 200 192928 24 41 47 18 16 17 40 chain 107924 chr4 191154276 + 132129752 132131006 L1HS 6032 - 4576 5825 34741 1135 1 0 50 4 1 14 1 0 49 chain 73776 chr4 191154276 + 132131006 132131826 L1PA3long 6157 + 5337 6157 46583 820 chain 329629 chr4 191154276 + 132137580 132141768 L1PA7 6471 - 11 4164 12216 25 0 1 120 1 2 683 0 7 9 1 0 515 26 6 36 0 1 100 8 0 694 0 1 424 1 0 215 2 1 16 0 2 31 1 2 38 0 2 6 6 4 10 0 2 295 0 1 478 14 15 77 22 0 334 chain 41623 chr4 191154276 + 132163362 132163867 L1PA7 6471 - 48 552 67127 114 1 0 390 chain 15588 chr4 191154276 + 132190010 132190220 MER30 238 - 0 201 139620 48 3 0 85 6 0 68 chain 27478 chr4 191154276 + 132194504 132194870 L1PA10 4194 + 3786 4150 94723 30 0 1 298 4 1 34 chain 11106 chr4 191154276 + 132211441 132211665 HUERS-P1-int 2401 - 1721 1909 155788 108 2 0 14 22 11 4 0 1 7 2 0 5 1 0 24 21 0 14 chain 6095 chr4 191154276 + 132220999 132221071 L1PA6 6164 + 6086 6162 184458 23 0 4 49 chain 534337 chr4 191154276 + 132273548 132279564 L1PA3long 6157 + 4 6156 3673 75 2 1 73 1 2 51 1 0 213 1 0 6 3 0 149 0 3 199 0 128 57 0 4 390 0 1 2766 0 2 1276 0 3 753 chain 76720 chr4 191154276 + 132300345 132301497 LTR12D 1347 + 0 1342 45111 144 9 6 55 2 0 9 8 10 25 42 87 33 1 0 57 0 158 50 0 7 58 0 17 51 0 1 36 0 5 213 43 6 21 4 3 29 2 1 260 chain 22569 chr4 191154276 + 132307402 132307844 L1PA14 3548 - 93 509 117724 31 10 9 19 1 0 28 38 36 104 8 7 71 0 1 12 1 0 6 2 0 13 10 6 54 19 4 15 chain 25650 chr4 191154276 + 132314919 132315213 L1PA5 6144 - 1 292 101494 14 3 0 277 chain 27292 chr4 191154276 + 132316716 132317164 MER4D 903 + 450 903 95295 206 42 35 14 0 12 106 29 30 41 1 0 9 chain 491631 chr4 191154276 + 132318810 132325160 L1PA7 6471 - 1 6468 7287 146 2 4 11 12 14 5 2 0 319 22 53 203 21 22 72 1 0 18 0 4 650 1 0 222 10 12 130 1 4 93 0 1 124 0 1 528 1 0 231 0 1 81 1 0 25 1 0 290 0 3 1037 0 35 780 0 1 6 2 1 438 3 7 5 4 0 96 9 10 361 8 13 10 4 1 40 11 30 30 1 2 31 19 34 232 chain 135419 chr4 191154276 + 132341189 132342744 L1HS 6032 - 3523 5078 26935 1555 chain 122122 chr4 191154276 + 132342745 132344123 L1PA3long 6157 + 2645 4019 30338 861 4 0 513 chain 193668 chr4 191154276 + 132344123 132346256 L1PA3long 6157 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L1MA6 2487 + 2239 2394 191832 32 7 5 15 1 0 4 93 49 36 3 0 14 chain 7284 chr4 191154276 + 132765375 132765465 MLT1C 463 + 365 455 175558 90 chain 3706 chr4 191154276 + 132778250 132778336 MER45A 178 + 75 162 211872 27 32 33 27 chain 165919 chr4 191154276 + 132786818 132788853 L1PA7 6471 - 2 2047 22525 8 5 0 492 8 12 235 0 3 98 3 1 54 1 0 305 5 12 363 2 3 17 0 3 32 1 0 4 1 2 401 chain 24058 chr4 191154276 + 132801711 132801984 AluYc 301 + 1 276 109994 119 0 2 154 chain 5141 chr4 191154276 + 132805616 132805687 MER67A 545 - 20 92 193663 43 3 4 25 chain 24575 chr4 191154276 + 132813197 132813487 AluSp 311 + 8 298 107105 290 chain 24745 chr4 191154276 + 132819310 132819615 AluY 311 + 3 304 106191 290 4 0 11 chain 59612 chr4 191154276 + 132866977 132867684 L1PA7 6471 + 5758 6465 53044 707 chain 34187 chr4 191154276 + 132870512 132871021 MER4E1 777 - 29 476 77368 182 1 2 14 77 14 235 chain 28511 chr4 191154276 + 132906550 132906865 AluYb8 318 + 0 306 91145 294 9 0 12 chain 15759 chr4 191154276 + 132916181 132916420 L1PB2 3958 - 120 368 139084 48 4 16 20 2 0 69 9 8 53 0 1 6 1 0 27 chain 34608 chr4 191154276 + 132926922 132927383 L1PA8 5853 + 5399 5853 76746 92 3 2 71 1 0 36 10 8 76 5 4 52 2 1 21 1 0 91 chain 3349 chr4 191154276 + 132952212 132952254 L1M3 994 - 787 828 218059 36 1 0 5 chain 370808 chr4 191154276 + 133005919 133035546 HERVL-int 5654 - 47 5654 11065 5 1 0 44 41 43 79 1 0 3 3 0 55 74 80 103 0 1 264 0 1 107 0 1 15 19 14 236 5 4 148 7 6 391 24163 43 1146 0 72 6 0 3 80 10 11 367 0 3 277 1 2 5 1 0 4 0 1 99 7 8 96 1 3 4 1 0 314 7 8 87 0 1 74 0 1 38 0 1 378 0 5 31 0 6 45 0 1 182 0 1 465 0 3 112 5 4 20 chain 64445 chr4 191154276 + 133007545 133008349 HERVL-int 5654 - 1696 2506 50822 117 17 21 66 0 1 277 0 1 327 chain 61917 chr4 191154276 + 133011563 133012319 LTR17 781 - 0 781 51936 43 1 24 211 3 0 175 0 1 204 0 4 119 chain 293563 chr4 191154276 + 133039747 133043384 HERVH-int 3825 + 0 3825 13795 211 5 16 106 1 0 212 0 1 24 1 0 11 2 0 11 22 12 14 1 0 13 33 10 8 23 0 49 2 1 80 1 0 459 15 0 139 0 3 305 6 33 288 0 4 241 0 1 4 1 0 45 0 1 416 0 1 351 9 11 5 0 3 31 8 218 260 0 2 200 0 1 24 chain 31902 chr4 191154276 + 133044635 133045046 LTR7 482 + 0 482 81006 69 8 46 109 0 1 33 0 32 192 chain 6568 chr4 191154276 + 133052869 133052945 LTR7Y 441 - 0 76 180712 76 chain 141548 chr4 191154276 + 133054390 133056032 L1PA5 6144 + 4492 6135 25892 543 2 1 321 1 0 148 0 1 108 2 3 193 1 2 323 chain 6499 chr4 191154276 + 133068050 133068119 LTR7B 505 + 0 69 181247 69 chain 3410 chr4 191154276 + 133068305 133068361 L1MC1 2226 + 1992 2050 216923 25 7 9 24 chain 19110 chr4 191154276 + 133077980 133078327 THE1B 368 - 12 368 129793 106 66 76 6 1 0 14 19 0 10 0 19 125 chain 59432 chr4 191154276 + 133083808 133084521 LTR30 714 + 0 714 53152 449 8 9 256 chain 434607 chr4 191154276 + 133085081 133091307 L1PA8A 6298 - 7 6207 9201 75 10 6 27 1 2 221 2 1 29 6 7 65 8 15 263 2 0 90 2 1 67 0 1 201 14 0 4 12 0 153 0 7 124 0 3 37 9 0 57 10 11 6 1 0 279 6 7 392 0 1 67 8 9 112 5 6 73 6 7 106 8 11 50 5 4 133 7 8 78 5 4 78 19 20 862 8 0 210 0 3 89 3 0 311 20 2 186 0 3 85 1 0 15 61 99 31 0 1 250 6 10 62 14 0 7 5 9 16 3 0 6 2 5 19 7 8 447 10 22 175 4 3 5 1 0 10 17 14 39 8 8 31 17 11 11 1 0 7 1 2 26 0 2 6 13 8 14 1 0 4 41 35 14 3 1 12 1 0 5 1 0 14 2 1 9 3 2 17 6 1 6 2 0 4 1 0 18 0 2 7 chain 29634 chr4 191154276 + 133100043 133100356 AluYb9 318 + 0 313 86115 313 chain 41955 chr4 191154276 + 133104540 133105005 L1PA2 6032 + 5560 6027 66679 293 1 3 171 chain 28902 chr4 191154276 + 133114047 133114359 AluYa5 310 - 0 310 89451 184 2 0 126 chain 170129 chr4 191154276 + 133128013 133129932 L1PA4 6152 - 9 1934 22033 759 1 0 83 1 0 111 0 2 542 0 6 422 chain 14298 chr4 191154276 + 133129932 133130090 L1PA4 6152 + 4084 4242 142954 158 chain 289643 chr4 191154276 + 133176782 133181300 L1PA5 6144 + 1579 6139 14042 230 0 1 32 107 100 82 78 77 15 10 10 84 7 5 85 8 6 51 9 0 7 0 9 51 1 5 7 4 0 115 16 20 15 46 46 137 59 58 26 2 17 58 13 16 252 1 0 11 27 28 17 54 58 208 126 129 20 35 40 35 1 23 103 0 1 475 0 4 128 1 0 4 0 1 435 9 1 1055 1 2 165 chain 4685 chr4 191154276 + 133181300 133181355 L1P1 4361 + 3738 3793 194864 55 chain 31860 chr4 191154276 + 133182933 133183288 L1PA5 6144 + 5527 5882 81082 355 chain 9130 chr4 191154276 + 133209757 133209862 L1PB 1623 - 325 430 164905 105 chain 73391 chr4 191154276 + 133229503 133230376 MER11D 897 - 0 897 46840 39 0 4 3 4 0 230 0 24 597 chain 6025 chr4 191154276 + 133239359 133239430 L1PA8 5853 + 5778 5849 185019 71 chain 136681 chr4 191154276 + 133242619 133244174 L1PA4 6152 + 4582 6143 26695 59 0 10 647 0 4 192 9 0 58 0 1 590 chain 16715 chr4 191154276 + 133265584 133265789 AluYc 301 + 83 288 136353 205 chain 432807 chr4 191154276 + 133272611 133278233 HERVL-int 5654 - 0 5654 9244 75 0 2 146 0 1 542 7 12 102 1 7 10 6 0 717 5 6 451 1 0 1286 28 27 70 7 4 23 5 4 52 1 9 43 20 16 323 0 2 41 8 6 5 0 2 77 0 1 450 0 4 18 2 3 81 0 2 86 13 0 153 9 0 175 27 28 313 5 24 121 0 17 12 2 3 44 16 15 43 chain 3593 chr4 191154276 + 133278233 133278271 MLT2A1 477 - 0 38 213792 38 chain 3056 chr4 191154276 + 133303190 133303222 THE1C-int 1605 - 1424 1456 223896 32 chain 12357 chr4 191154276 + 133319644 133319996 L1PB1 5432 - 10 329 150812 17 9 8 5 1 0 22 1 0 23 60 45 21 1 0 20 0 1 23 1 0 16 2 1 45 46 38 17 8 3 14 chain 3344 chr4 191154276 + 133324272 133324309 L1PB1 5432 + 1972 2009 218152 37 chain 529094 chr4 191154276 + 133378959 133385041 L1PA5 6144 + 0 6132 4287 537 18 32 23 0 1 862 0 1 73 7 6 1172 1 0 4 0 1 262 0 20 207 0 1 585 0 1 551 0 2 316 10 11 254 0 4 368 0 5 210 0 1 622 chain 35736 chr4 191154276 + 133386740 133387157 L1PA7 6471 - 1820 2237 75213 417 chain 146997 chr4 191154276 + 133387157 133388944 L1PA7 6471 + 4667 6470 25021 312 1 0 432 1 0 62 0 5 143 0 3 74 0 2 142 3 4 452 15 22 150 chain 25860 chr4 191154276 + 133405094 133405377 L1PA2 6032 - 1902 2187 98752 66 0 1 168 0 1 49 chain 173563 chr4 191154276 + 133405377 133407270 L1PA2 6032 + 4134 6027 21642 1893 chain 26598 chr4 191154276 + 133413184 133413615 LTR7 482 + 0 482 97671 138 56 73 10 1 2 42 0 31 9 0 1 73 1 0 40 12 14 49 chain 28671 chr4 191154276 + 133416454 133416842 LTR7 482 + 0 482 90439 56 1 0 58 0 51 59 0 1 40 0 31 18 0 10 93 14 16 49 chain 8322 chr4 191154276 + 133443856 133443960 MLT2C1 407 - 286 390 169271 104 chain 103164 chr4 191154276 + 133465627 133466788 L1PA4 6152 + 4986 6152 35958 176 0 1 318 0 10 547 0 1 89 6 0 19 1 0 5 chain 3398 chr4 191154276 + 133467854 133467891 MER50 708 + 173 210 217094 37 chain 8684 chr4 191154276 + 133469683 133469864 MER76 683 + 24 226 167278 49 38 53 51 15 21 28 chain 25848 chr4 191154276 + 133485129 133485421 L1PA5 6144 - 0 292 100664 292 chain 6431 chr4 191154276 + 133485421 133485489 L1PA5 6144 + 5767 5835 181768 68 chain 4435 chr4 191154276 + 133493304 133493360 MER87B 500 - 63 119 201530 56 chain 88396 chr4 191154276 + 133537266 133538299 L1PA7 6471 + 5424 6461 40223 193 1 4 700 0 1 139 chain 101542 chr4 191154276 + 133549942 133551297 L1PA3long 6157 + 4465 5783 36390 177 0 1 134 6 0 226 1 0 80 57 19 198 0 4 117 0 1 58 0 1 43 6 7 252 chain 547062 chr4 191154276 + 133552441 133558459 L1PA2 6032 - 1 6032 1823 13 1 0 249 0 6 603 0 4 390 0 1 1845 0 1 466 0 3 2194 1 0 256 chain 28693 chr4 191154276 + 133576054 133576359 AluYg6 310 + 0 305 90354 305 chain 81658 chr4 191154276 + 133607755 133608678 L1PA4 6152 - 1 923 42905 761 1 0 161 chain 31017 chr4 191154276 + 133618531 133618903 L1PA7 6471 - 14 386 82484 372 chain 28475 chr4 191154276 + 133619886 133620182 AluYd8 298 - 2 298 91287 296 chain 6136 chr4 191154276 + 133631955 133632023 L1PA8 5853 - 5 73 184112 68 chain 2871 chr4 191154276 + 133654134 133654166 L1MD1 2063 + 381 413 227516 32 chain 28004 chr4 191154276 + 133692854 133693151 AluYg6 310 - 13 310 92988 297 chain 4797 chr4 191154276 + 133707521 133707597 L1PB1 5432 - 33 105 197389 7 1 0 22 1 0 17 0 1 6 2 0 14 1 0 5 chain 34299 chr4 191154276 + 133733764 133734238 LTR10F 562 - 0 562 77212 294 37 10 27 9 124 107 chain 194999 chr4 191154276 + 133734537 133737309 HERVIP10FH-int 2884 - 60 2735 19585 35 16 10 7 1 0 67 1 0 66 1 0 265 4 5 58 18 14 25 1 0 21 1 0 201 9 8 44 2 1 10 0 1 83 0 1 119 5 4 15 1 0 3 10 0 42 19 7 43 20 3 14 7 1 12 44 27 12 24 4 126 6 1 63 1 0 7 1 0 11 3 0 8 4 1 77 8 7 66 0 4 17 2 0 259 5 0 7 0 1 404 4 6 86 0 12 189 0 1 35 3 0 13 1 6 40 chain 35852 chr4 191154276 + 133739582 133740028 LTR10F 562 - 0 562 75058 37 1 2 273 0 115 135 chain 3071 chr4 191154276 + 133763930 133764056 MER3 215 - 32 158 223538 23 70 70 33 chain 8525 chr4 191154276 + 133789232 133789515 L1M1 2793 + 668 957 168161 26 48 35 11 2 0 5 2 0 15 0 30 12 1 0 29 77 71 55 chain 30296 chr4 191154276 + 133790477 133790795 AluYb9 318 + 0 318 83942 318 chain 23278 chr4 191154276 + 133799009 133799531 L1PB1 5432 - 10 498 114306 4 1 0 14 1 0 11 1 0 23 1 0 26 2 0 12 12 9 15 27 16 12 1 0 31 30 29 42 87 75 169 chain 38582 chr4 191154276 + 133803454 133803954 LTR17 781 + 259 781 71319 68 1 0 64 9 10 314 0 22 44 chain 308681 chr4 191154276 + 133805789 133809496 HERV17-int 4347 + 28 4230 13059 50 1 0 34 2 0 27 1 0 42 0 1 153 12 446 467 0 13 92 0 1 61 4 3 52 1 2 488 0 1 225 0 5 956 1 0 246 9 12 415 0 4 119 0 5 63 2 5 132 2 32 50 chain 25418 chr4 191154276 + 133809967 133810293 LTR17 781 + 0 324 102600 61 1 0 122 1 0 141 chain 45665 chr4 191154276 + 133815488 133816070 L1PA6 6164 + 5581 6162 62339 549 5 6 18 2 0 8 chain 45632 chr4 191154276 + 133824176 133824679 L1PA3long 6157 + 5655 6157 62372 163 1 0 339 chain 11352 chr4 191154276 + 133840866 133841020 MLT2A1 477 + 268 477 154891 56 1 0 59 1 54 5 0 3 32 chain 10021 chr4 191154276 + 133850778 133850921 Tigger3a 397 + 183 333 160481 30 9 16 104 chain 552760 chr4 191154276 + 133865600 133871588 L1PA2 6032 + 37 6032 1101 327 0 1 514 0 1 432 0 1 1658 3 7 3054 chain 40954 chr4 191154276 + 133880478 133880971 MER9a3 513 + 0 498 67972 378 2 7 113 chain 3113 chr4 191154276 + 133900850 133900885 MER41C 542 + 274 309 222689 35 chain 29399 chr4 191154276 + 133908538 133908845 AluYa5 310 - 3 310 87081 307 chain 157974 chr4 191154276 + 133939858 133941777 L1PA7 6471 + 4480 6469 23596 212 4 5 150 0 1 107 2 0 5 0 69 7 3 0 393 0 2 177 8 11 689 5 6 145 2 0 10 chain 127752 chr4 191154276 + 133974852 133976318 L1PA4 6152 + 4665 6152 28632 521 4 5 787 1 16 147 0 5 6 chain 28600 chr4 191154276 + 134141611 134141912 AluYa5 310 - 9 310 90731 301 chain 127926 chr4 191154276 + 134160473 134162127 LTR12C 1709 - 0 1709 28590 297 102 0 70 6 4 31 7 8 71 0 4 107 3 1 5 1 0 115 0 159 95 1 0 282 1 0 460 chain 21958 chr4 191154276 + 134171206 134171482 AluSc8 310 + 14 290 120395 15 4 0 103 0 3 73 1 2 80 chain 27272 chr4 191154276 + 134177536 134177829 AluYf4 310 - 17 310 95369 293 chain 177105 chr4 191154276 + 134178736 134181296 MER4-int 2692 - 0 2618 21242 117 0 10 53 1 0 14 1 0 16 0 4 16 1 0 93 0 1 83 0 3 6 5 6 78 11 6 30 14 15 13 3 0 5 0 3 14 0 1 38 0 1 120 0 1 56 1 0 24 18 17 40 0 1 5 8 7 42 0 1 25 0 1 49 0 4 106 3 10 41 1 0 46 0 9 27 1 0 10 0 1 16 7 23 179 1 2 15 11 10 23 1 0 53 1 0 14 1 4 19 0 2 107 1 0 190 0 4 35 0 2 7 19 7 39 0 3 72 0 1 34 0 9 222 5 4 133 0 1 75 20 19 25 chain 271063 chr4 191154276 + 134186338 134189549 HERVH-int 3825 - 0 3221 15136 403 13 14 135 0 1 80 0 9 43 16 0 8 0 16 523 0 1 1161 0 1 589 0 3 59 1 0 79 10 9 35 29 25 27 chain 26700 chr4 191154276 + 134189663 134190062 LTR7 482 - 0 482 97321 49 11 14 95 0 10 19 1 32 30 8 9 109 8 46 69 chain 80580 chr4 191154276 + 134198819 134199894 MER11A 1151 - 0 1144 43354 31 1 0 35 1 0 176 1 36 11 5 28 154 0 1 120 17 16 79 0 1 11 11 12 51 0 1 60 0 2 21 0 11 64 1 0 19 2 0 204 chain 8826 chr4 191154276 + 134222155 134222269 L1PA5 6144 + 6026 6143 166516 12 1 4 101 chain 66773 chr4 191154276 + 134227526 134228277 L1PA4 6152 - 3 758 49745 667 0 4 84 chain 14781 chr4 191154276 + 134248234 134248442 L1PA8 5853 + 5654 5853 141997 24 2 1 61 2 1 19 1 0 84 6 0 9 chain 12021 chr4 191154276 + 134248767 134248929 L1PB2 3958 + 3679 3838 152116 74 2 0 21 2 1 63 chain 318884 chr4 191154276 + 134251514 134255760 L1PA7 6471 - 4 6466 12637 124 1 0 241 0 1 398 6 5 82 1 0 318 0 1 31 1 0 4 0 1 210 0 1 103 3 0 125 0 4 146 5 7 53 0 1 26 0 3 57 0 798 113 0 1 7 5 6 62 0 1 34 1 0 260 6 18 188 3 0 3 0 1195 65 1 5 407 0 1 4 1 0 60 28 28 418 1 0 116 0 10 202 24 194 109 1 23 10 27 27 155 chain 7729 chr4 191154276 + 134268163 134268342 L1PB1 5432 + 5264 5422 172718 17 1 0 15 1 0 4 2 0 11 9 0 15 9 6 14 3 1 19 9 8 18 1 0 12 1 0 18 chain 11749 chr4 191154276 + 134298626 134298799 LTR9B 643 - 460 634 153261 45 19 20 109 chain 20045 chr4 191154276 + 134307702 134308002 THE1B 368 + 0 304 126993 169 1 0 19 4 6 5 0 1 14 0 4 14 21 19 53 chain 10370 chr4 191154276 + 134332768 134332898 L1PA8 5853 - 0 128 158829 93 1 0 16 1 0 19 chain 39246 chr4 191154276 + 134371876 134372557 LTR1 825 + 0 686 70393 196 51 7 28 98 150 153 2 0 40 7 6 106 chain 24894 chr4 191154276 + 134395256 134395557 AluSp 311 + 9 311 105382 53 0 3 55 2 0 191 chain 23080 chr4 191154276 + 134408385 134408658 AluY 311 + 30 304 115240 102 0 1 171 chain 152136 chr4 191154276 + 134412068 134413751 L1PA3long 6157 - 5 1688 24319 1683 chain 449932 chr4 191154276 + 134426483 134433095 L1PA8A 6298 + 28 6291 8768 6 6 0 8 1 0 14 1 0 12 20 9 23 3 0 19 10 7 7 6 0 14 27 24 6 1 0 12 2 0 15 7 4 12 19 16 6 1 0 9 12 7 8 2 0 48 10 9 7 8 0 66 12 10 16 1 0 6 9 7 71 7 6 134 1 0 128 5 6 28 46 52 233 0 4 172 1 2 151 4 10 568 6 1 43 1 0 152 3 2 308 4 6 51 12 8 84 9 10 77 0 1 49 1 3 27 11 12 98 5 6 162 7 10 272 12 10 13 4 1 75 7 4 386 0 1 436 0 1 499 0 1 398 22 41 23 0 2 81 0 1 134 8 10 73 0 1 136 323 6 498 3 0 78 chain 206397 chr4 191154276 + 134452646 134455359 HERVH-int 3825 - 446 3825 18761 80 0 1 112 0 367 401 5 4 5 0 1 313 4 9 88 10 46 266 0 5 74 1 0 10 1 0 127 1 0 39 9 0 182 0 1 19 15 0 33 0 16 400 0 265 28 5 0 12 14 18 32 16 15 77 1 0 333 chain 3588 chr4 191154276 + 134455660 134455706 LTR7 482 - 299 346 213852 19 0 1 27 chain 12720 chr4 191154276 + 134489933 134490087 L1PA7 6471 - 5 159 149377 154 chain 133235 chr4 191154276 + 134490088 134491901 L1P3 4156 - 2311 4154 27387 143 9 12 77 1 0 237 1 2 5 1 0 28 6 2 625 6 28 31 4 0 321 16 15 58 24 23 26 10 26 184 chain 29664 chr4 191154276 + 134493088 134493471 LOR1b 457 - 0 381 85984 313 2 0 68 chain 6584 chr4 191154276 + 134497380 134497462 MLT2D 439 - 354 436 180583 82 chain 5908 chr4 191154276 + 134503521 134503594 MADE1 96 - 1 96 186102 31 0 22 42 chain 36481 chr4 191154276 + 134519764 134520265 LTR19A 502 - 0 502 74262 43 0 1 90 10 9 58 1 0 16 0 2 5 2 0 73 0 4 6 1 0 4 1 0 191 chain 375401 chr4 191154276 + 134525094 134529830 HERVL-int 5654 - 205 5654 10902 109 0 1 382 0 3 182 6 0 290 7 721 16 3 6 528 4 5 377 3 8 125 0 1 5 1 0 192 0 1 22 15 4 739 6 8 518 0 1 556 3 0 147 1 2 391 1 0 7 2 4 98 chain 32481 chr4 191154276 + 134529830 134530273 MLT2A1 477 - 0 477 80064 40 4 0 11 5 41 176 0 5 34 4 1 169 chain 109289 chr4 191154276 + 134548846 134550421 L1PA5 6144 - 12 1259 34373 971 328 0 276 chain 496603 chr4 191154276 + 134606343 134612271 L1PA5 6144 - 9 6141 7030 318 6 7 282 0 1 53 18 19 1179 3 1 77 5 6 1205 0 1 78 9 0 448 0 1 616 0 1 4 1 0 383 0 1 284 9 0 342 18 1 10 1 18 469 40 257 70 chain 21220 chr4 191154276 + 134612656 134612920 L1PA8A 6298 + 6019 6283 123146 264 chain 4299 chr4 191154276 + 134629380 134629427 MADE1 96 - 1 48 203217 47 chain 3973 chr4 191154276 + 134630846 134630892 L1PB1 5432 + 5052 5098 207787 46 chain 31933 chr4 191154276 + 134637370 134637839 MER4A1 472 - 0 472 80964 233 55 57 177 0 1 4 chain 121878 chr4 191154276 + 134649291 134650691 L1PA5 6144 + 4733 6139 30421 564 0 4 519 1 2 70 0 1 88 1 6 5 5 0 147 chain 546554 chr4 191154276 + 134655097 134661107 L1PA2 6032 - 1 6032 1875 713 0 12 769 1 0 1975 1 0 739 1 0 961 0 4 276 1 9 573 chain 3557 chr4 191154276 + 134664951 134664992 L1PA15 4387 - 1782 1823 214402 41 chain 168551 chr4 191154276 + 134667013 134669533 L1PA8A 6298 + 4041 6291 22217 267 0 1 83 0 4 45 3 4 205 6 7 19 8 10 139 10 6 170 0 29 396 1 10 26 7 11 11 3 0 5 0 2 39 0 2 256 3 4 217 357 37 226 1 2 17 chain 23111 chr4 191154276 + 134668996 134669289 L1PA5 6144 - 3 296 115089 293 chain 25563 chr4 191154276 + 134697655 134698002 THE1B 368 + 0 357 101917 40 0 15 53 1 0 66 1 0 25 2 0 94 1 0 64 chain 13356 chr4 191154276 + 134700052 134700229 Tigger7 736 - 253 429 146861 47 1 0 129 chain 132165 chr4 191154276 + 134707816 134709251 L1PA2 6032 - 3 1438 27601 1435 chain 12067 chr4 191154276 + 134709253 134709390 L1P1 4361 + 3563 3700 151911 137 chain 22910 chr4 191154276 + 134713226 134713542 AluSp 311 + 6 301 116061 119 36 15 161 chain 9722 chr4 191154276 + 134738146 134738261 L1PA10 4194 + 2380 2495 161976 115 chain 3864 chr4 191154276 + 134754917 134755343 L1MD2 1676 - 310 729 209386 28 361 354 37 chain 7017 chr4 191154276 + 134781389 134781486 MER30 238 + 140 235 177338 40 1 2 15 3 0 38 chain 8537 chr4 191154276 + 134792922 134793085 L1MA5A 2387 - 12 157 168092 13 2 0 22 1 0 10 1 0 13 29 16 5 1 0 66 chain 5362 chr4 191154276 + 134806940 134807281 L1MA4 2864 + 2502 2794 191412 19 12 11 31 232 186 18 2 0 27 chain 38575 chr4 191154276 + 134832186 134832780 L1PA11 4918 + 3921 4499 71330 17 0 1 117 0 1 20 1 2 122 45 23 20 0 8 87 2 0 54 4 3 14 1 2 62 2 0 13 0 2 5 3 0 5 chain 74710 chr4 191154276 + 134837168 134838132 L1PA8 5853 - 0 955 46153 92 5 4 16 2 1 52 1 0 9 2 1 70 2 0 46 1 0 549 5 3 112 chain 26583 chr4 191154276 + 134838132 134838447 L1PA8 5853 + 4583 4899 97431 150 0 1 165 chain 14354 chr4 191154276 + 134864297 134864594 MER4D1 891 - 594 891 143364 129 0 1 22 90 0 8 0 90 20 3 2 25 chain 313103 chr4 191154276 + 134882321 134887961 L1PB1 5432 + 55 5300 12887 159 1247 838 64 36 8 242 1 2 22 0 18 147 7 8 38 29 30 440 11 12 59 12 13 51 0 15 134 0 1 62 0 1 80 1 0 84 0 1 34 6 7 55 0 1 26 0 1 104 1 0 29 3 1 49 0 3 260 1 2 489 27 26 56 4 6 219 0 2 11 0 1 281 4 0 90 0 2 208 7 8 51 1 5 10 0 1 44 1 2 37 1 0 129 1 7 262 1 2 9 5 0 24 4 3 5 1 0 14 4 0 9 3 1 50 2 1 16 1 0 44 1 0 15 1 0 4 chain 52334 chr4 191154276 + 134882492 134883176 LTR17 781 + 0 728 57409 327 1 0 145 2 0 47 3 2 11 2 1 14 7 56 125 chain 21748 chr4 191154276 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134962865 L1PA7 6471 + 4576 6456 24965 339 0 1 33 11 0 374 0 1 265 2 1 5 0 1 6 0 4 7 14 12 510 3 0 173 15 16 4 1 0 24 14 27 77 chain 72670 chr4 191154276 + 134967156 134968140 LTR5B 1012 - 17 1012 47182 411 0 1 94 1 0 14 1 0 101 12 10 4 0 1 17 1 0 187 7 21 6 1 0 38 6 7 83 chain 25142 chr4 191154276 + 135007956 135008239 L1PA2 6032 - 0 283 104051 283 chain 22405 chr4 191154276 + 135008239 135008480 L1PA2 6032 + 5523 5764 118461 241 chain 15785 chr4 191154276 + 135031802 135032005 MER2 342 - 47 250 138998 203 chain 34598 chr4 191154276 + 135035412 135035864 LTR71A 459 + 7 459 76759 9 0 1 180 4 5 249 2 0 8 chain 2284 chr4 191154276 + 135054625 135054661 L1PB1 5432 + 5107 5138 235525 8 5 0 23 chain 5564 chr4 191154276 + 135054759 135054833 L1PB1 5432 + 5221 5293 189437 16 1 0 44 1 0 12 chain 3665 chr4 191154276 + 135054891 135054943 L1PB1 5432 + 5349 5399 212471 21 1 0 22 1 0 7 chain 6175 chr4 191154276 + 135073775 135073847 MSTB1-int 1597 - 1493 1565 183774 72 chain 203620 chr4 191154276 + 135106379 135108753 L1PA5 6144 + 3669 6039 18952 6 1 0 256 0 1 230 0 1 549 4 1 97 1 0 4 1 2 16 2 0 1207 chain 7743 chr4 191154276 + 135126835 135126943 L1MA4 2864 + 2483 2590 172637 14 3 2 91 chain 556300 chr4 191154276 + 135128937 135135082 L1PA3long 6157 + 10 6157 691 1269 1 0 113 0 1 1303 0 1 2603 1 0 706 0 2 149 chain 97390 chr4 191154276 + 135150735 135152174 L1PB 1623 - 53 1453 37456 17 52 29 9 1 0 13 30 22 26 2 1 7 1 0 147 0 3 225 9 9 221 1 8 15 0 1 332 1 0 51 11 8 13 4 0 14 6 2 127 2 1 78 2 0 4 1 0 17 chain 3876 chr4 191154276 + 135171605 135171650 L1MA4 2864 - 546 591 209212 45 chain 91014 chr4 191154276 + 135210014 135211025 L1PA4 6152 - 1 1013 39287 334 1 2 676 chain 11769 chr4 191154276 + 135231987 135232208 Tigger3a 397 - 113 397 153179 126 21 83 21 34 35 19 chain 29636 chr4 191154276 + 135232796 135233297 MLT2A1 477 + 3 477 86112 130 10 0 36 4 1 12 0 1 25 0 2 38 18 25 122 4 0 10 10 0 8 24 0 10 3 17 37 chain 41961 chr4 191154276 + 135242332 135242841 L1PA7 6471 + 5958 6466 66673 350 2 1 157 chain 62358 chr4 191154276 + 135257359 135258089 L1PA6 6164 - 6 736 51736 730 chain 13432 chr4 191154276 + 135283220 135283403 MER47A 366 - 70 257 146568 16 1 6 47 2 1 117 chain 3620 chr4 191154276 + 135347603 135347649 MADE1 96 + 50 96 213340 46 chain 511275 chr4 191154276 + 135358299 135364435 L1PA6 6164 - 4 6164 6043 6 2 0 86 1 0 162 10 3 586 1 5 83 0 1 1411 0 1 574 11 15 37 0 1 862 3 4 252 0 3 1244 0 17 181 0 1 58 1 0 266 0 1 14 11 12 274 chain 78374 chr4 191154276 + 135374619 135375593 L1PA7 6471 + 5483 6469 44334 139 0 2 205 13 23 469 5 8 128 3 0 12 chain 3656 chr4 191154276 + 135386585 135386889 MLT1B 390 - 16 325 212646 36 242 247 26 chain 69242 chr4 191154276 + 135402425 135403289 L1PA10 4194 - 44 906 48707 33 4 1 34 3 0 453 0 3 186 1 0 4 0 1 49 0 1 97 chain 38814 chr4 191154276 + 135404767 135405224 L1PA5 6144 + 5689 6143 70997 443 4 1 10 chain 11352 chr4 191154276 + 135405279 135405469 Tigger3a 397 - 116 344 154892 11 0 5 79 15 25 21 16 39 48 chain 108218 chr4 191154276 + 135413659 135414871 L1PA4 6152 + 4928 6140 34642 1212 chain 6491 chr4 191154276 + 135441734 135441814 L1PA8 5853 + 5773 5853 181323 80 chain 68642 chr4 191154276 + 135492016 135492886 L1PA7 6471 - 4 878 48963 325 5 6 426 2 0 6 1 4 76 0 2 29 chain 203316 chr4 191154276 + 135492886 135495402 L1PA7 6471 + 3050 5579 18974 51 0 2 374 0 2 12 0 1 45 4 5 467 2 0 355 1 0 4 0 1 123 15 16 116 0 1 270 1 0 183 0 1 252 6 13 235 chain 37303 chr4 191154276 + 135542933 135543410 LTR2B 499 + 5 499 73075 7 0 1 61 3 0 37 0 19 178 0 1 8 1 0 182 chain 55805 chr4 191154276 + 135543831 135544521 LTR30 714 - 0 714 55245 53 0 11 98 1 0 6 13 12 253 0 1 36 1 2 12 0 4 168 0 9 49 chain 3316 chr4 191154276 + 135559073 135559358 MLT1C 463 + 138 401 218660 31 228 206 26 chain 2732 chr4 191154276 + 135560411 135560453 MADE1 96 - 53 96 229716 16 3 4 23 chain 39971 chr4 191154276 + 135579960 135580573 L1PA13 3608 + 1780 2375 69364 19 5 3 6 0 3 33 5 4 35 0 6 5 5 0 26 18 16 157 0 2 52 9 0 97 10 0 131 chain 4429 chr4 191154276 + 135589492 135589564 MER54B 801 + 0 73 201600 44 7 8 21 chain 31643 chr4 191154276 + 135599091 135599501 LTR7 482 - 0 482 81415 115 1 2 75 0 1 25 0 31 8 0 1 109 8 46 69 chain 286606 chr4 191154276 + 135600761 135604298 HERVH-int 3825 - 0 3825 14255 225 0 2 268 0 210 39 9 11 556 25 26 482 0 6 284 4 31 776 7 6 121 1 4 13 0 2 6 0 1 57 2 1 42 1 0 4 32 60 12 1 0 10 1 0 24 0 1 4 1 0 11 1 0 307 0 11 120 0 1 91 chain 30058 chr4 191154276 + 135604307 135604707 LTR7 482 - 7 482 84633 108 1 2 46 0 4 25 0 32 4 1 0 29 0 1 109 8 46 69 chain 280306 chr4 191154276 + 135633945 135637757 L1PA7 6471 + 2763 6469 14625 123 0 4 421 313 0 192 7 6 19 0 1 41 0 2 146 1 0 181 0 1 197 0 1 383 0 2 320 0 2 36 0 1 113 4 1 49 2 3 323 14 20 8 0 1 37 1 2 103 12 201 7 0 1 74 7 6 678 chain 29599 chr4 191154276 + 135644634 135644995 L1PA5 6144 - 0 365 86212 105 0 3 41 0 1 215 chain 83268 chr4 191154276 + 135660404 135662040 L1PB 1623 + 117 1489 42221 52 6 10 8 1 0 4 2 0 78 1 0 12 35 51 33 1 2 36 6 5 10 1 0 43 5 8 15 1 0 90 12 10 247 1 0 11 314 43 16 0 2 47 5 26 27 0 1 71 47 4 106 1 15 253 2 1 30 1 0 5 chain 168768 chr4 191154276 + 135663623 135667578 L1PB1 5432 + 3082 5430 22190 529 0 2 115 2 4 50 2 1 234 27 13 601 0 1 50 1566 0 31 1 2 93 2 0 90 0 1 215 11 0 24 1 0 4 3 2 14 5 1 9 2 0 52 19 16 45 1 0 9 29 16 4 0 1 12 14 24 23 1 0 21 1 0 13 1 0 14 1 0 4 1 0 4 1 0 4 chain 5145 chr4 191154276 + 135665260 135665316 L1PB1 5432 + 4708 4764 193593 56 chain 36664 chr4 191154276 + 135670701 135671106 L1PA4 6152 - 16 421 74005 405 chain 4371 chr4 191154276 + 135683056 135683465 MER77 626 - 10 466 202301 14 60 61 29 222 247 19 33 54 32 chain 4531 chr4 191154276 + 135693775 135693831 MSTA 426 + 332 388 200438 56 chain 318262 chr4 191154276 + 135704122 135708217 L1PA7 6471 - 4 6468 12661 63 0 6 239 2 0 171 0 1 54 29 1813 293 0 1 150 7 1 189 3 2 284 0 1 552 6 7 230 0 1 140 0 16 144 2 0 5 4 6 719 0 1 28 3 1 65 25 592 280 0 1 408 chain 250163 chr4 191154276 + 135713589 135716712 L1PA7 6471 + 3167 6294 16241 311 13 8 273 0 1 76 5 4 168 1 0 4 8 10 20 7 6 220 0 1 216 2 3 133 0 1 196 0 4 291 2 4 144 0 1 4 1 0 1028 chain 83662 chr4 191154276 + 135717830 135718785 L1PA4 6152 + 5195 6152 42050 106 1 0 275 0 1 230 0 2 343 chain 2798 chr4 191154276 + 135743925 135743956 L1PB1 5432 + 5250 5281 228755 31 chain 6488 chr4 191154276 + 135743964 135744119 L1PB1 5432 + 5288 5422 181341 8 1 0 4 2 0 9 10 0 10 10 8 5 1 0 14 2 0 24 1 0 17 5 4 13 1 0 18 chain 6643 chr4 191154276 + 135750239 135750330 L1MA4A 3247 - 131 221 180146 9 1 0 81 chain 526759 chr4 191154276 + 135750840 135756949 L1PA5 6144 + 14 6138 4523 1031 0 1 238 0 9 6 9 0 1145 0 2 32 0 1 606 9 8 65 0 1 36 2 1 96 1 0 42 0 1 575 0 1 983 0 4 388 0 1 4 1 0 719 6 13 115 chain 6419 chr4 191154276 + 135765422 135765492 L1PA3long 6157 + 6087 6157 181874 70 chain 142488 chr4 191154276 + 135770466 135772084 L1PA5 6144 + 4510 6128 25729 1618 chain 100948 chr4 191154276 + 135784238 135785341 L1PA3long 6157 - 0 1103 36524 1103 chain 194127 chr4 191154276 + 135822167 135824562 L1PA5 6144 - 4 2339 19662 10 6 0 51 15 7 19 58 7 49 0 1 632 0 1 132 0 1 353 0 1 80 4 7 161 4 0 679 9 11 133 chain 75289 chr4 191154276 + 135824565 135825436 L1P1 4361 + 2242 3116 45875 71 0 2 164 0 1 636 chain 30232 chr4 191154276 + 135835399 135835858 LTR7 482 + 0 475 84107 114 56 5 106 0 1 4 0 31 109 0 33 16 12 14 42 chain 503044 chr4 191154276 + 135844177 135850357 L1PA6 6164 - 2 6164 6666 216 1 0 4 0 1 1284 0 5 69 0 1 397 4 5 225 20 19 406 0 2 142 0 1 183 5 6 718 14 12 137 1 2 45 7 15 140 0 1 295 0 3 572 12 1 11 0 8 189 28 12 85 25 0 457 7 14 294 9 7 178 chain 21923 chr4 191154276 + 135890124 135890379 L1PA5 6144 - 3929 4184 119810 255 chain 344122 chr4 191154276 + 135890379 135894321 L1PA5 6144 + 2188 6142 11780 61 0 2 232 0 1 667 1 0 24 0 1 166 0 3 336 0 1 268 0 2 1335 0 1 163 0 1 15 0 1 607 0 4 7 4 0 56 chain 23478 chr4 191154276 + 135902723 135903017 AluY 311 + 16 310 113223 114 1 3 150 2 0 27 chain 7887 chr4 191154276 + 135908114 135908226 HERVL-int 5654 + 0 108 171763 14 7 3 91 chain 9069 chr4 191154276 + 135913191 135913288 L1PA5 6144 + 6041 6138 165219 97 chain 85954 chr4 191154276 + 135914857 135915898 L1PA7 6471 + 5391 6440 41174 68 0 1 165 0 3 70 1 3 505 0 2 88 1 2 4 1 0 138 chain 28937 chr4 191154276 + 135927550 135927861 AluYa5 310 + 0 308 89281 123 3 0 185 chain 76134 chr4 191154276 + 135939521 135940975 MER11A 1151 - 4 1151 45400 159 6 7 60 0 1 37 18 0 21 43 0 26 25 1 26 8 1 29 5 2 90 2 3 85 309 0 61 0 1 93 0 1 75 0 1 73 4 0 60 0 4 52 8 0 24 0 99 55 chain 365966 chr4 191154276 + 135958317 135963524 HERVL-int 5654 + 945 5654 11207 15 1 24 29 0 1 71 0 1 285 1 0 184 1 2 824 7 8 232 8 10 343 1 2 162 42 0 175 507 7 618 1 0 78 0 3 64 0 1 46 1 10 199 0 1 6 11 10 8 0 4 272 0 2 623 3 0 389 chain 27395 chr4 191154276 + 135960853 135961193 MLT2A1 477 - 133 477 94988 20 1 0 150 1 5 31 0 1 137 chain 31582 chr4 191154276 + 135963524 135963969 MLT2A1 477 + 0 477 81521 168 1 5 77 12 0 131 2 0 3 6 0 7 0 48 38 chain 34074 chr4 191154276 + 135992115 135992518 L1PA4 6152 + 5732 6136 77505 262 1 2 140 chain 359014 chr4 191154276 + 135995803 136000000 L1PA5 6144 - 4 4205 11376 146 15 15 2194 14 15 95 1 0 511 1 0 969 0 2 96 0 3 155 chain 18869 chr4 191154276 + 136000000 136000231 L1P2 5180 - 3228 3464 130462 99 1 6 131 chain 410213 chr4 191154276 + 136000619 136005006 L1HS 6032 - 1566 5953 9795 4387 chain 141386 chr4 191154276 + 136005006 136006533 L1HS 6032 + 4503 6032 25848 675 0 1 681 0 1 171 chain 8585 chr4 191154276 + 136011427 136011553 L1PA8 5853 + 5729 5853 167815 11 2 1 19 2 1 92 chain 3006 chr4 191154276 + 136024037 136024074 MADE1 96 - 1 38 224924 37 chain 172977 chr4 191154276 + 136029826 136032060 L1PA8 5853 - 0 2287 21709 80 21 37 22 20 14 11 13 11 69 2 0 47 1 0 20 1 2 24 0 1 343 0 35 128 2 0 107 0 9 691 1 5 631 chain 45030 chr4 191154276 + 136043589 136044142 LTR22 571 + 0 555 63018 77 0 1 4 1 0 194 0 1 156 6 7 115 chain 42670 chr4 191154276 + 136069514 136070015 L1PA5 6144 - 180 677 65816 80 3 0 39 1 0 378 chain 4983 chr4 191154276 + 136083455 136083515 MLT1B 390 + 32 92 195322 60 chain 30864 chr4 191154276 + 136088589 136089021 LTR7 482 - 0 482 82742 176 0 1 9 0 31 42 1 12 45 21 28 138 chain 296000 chr4 191154276 + 136090151 136093841 HERVH-int 3825 - 0 3825 13648 225 0 2 260 8 218 31 0 3 5 9 11 1045 0 10 299 6 31 243 0 1 660 0 3 13 0 2 7 0 1 56 2 1 42 0 37 15 28 0 24 12 10 30 74 5 32 61 0 503 chain 2213 chr4 191154276 + 136093217 136093245 HERVH-int 3825 - 3325 3351 220233 11 2 0 15 chain 496584 chr4 191154276 + 136099295 136104902 L1HS 6032 - 416 6026 7031 4132 0 4 1224 5 4 246 chain 49129 chr4 191154276 + 136104911 136105591 MER11A 1151 - 377 1144 59650 89 0 1 145 0 1 87 21 22 71 7 0 64 4 0 58 0 93 33 0 2 101 chain 30824 chr4 191154276 + 136172395 136172730 L1PA2 6032 + 5690 6026 82824 95 0 1 240 chain 17382 chr4 191154276 + 136188336 136188607 L1PA8 5853 - 0 266 134557 84 10 9 19 2 1 60 12 11 61 2 0 21 chain 18354 chr4 191154276 + 136210153 136210355 AluYa5 310 + 106 306 131927 26 2 0 174 chain 86889 chr4 191154276 + 136228087 136229082 L1PA5 6144 - 2 996 40830 257 1 0 737 chain 4844 chr4 191154276 + 136253808 136253874 MER3 215 - 36 108 196845 19 0 6 47 chain 8497 chr4 191154276 + 136262429 136262666 MER1B 344 - 10 249 168307 23 52 57 34 4 0 18 46 47 60 chain 62785 chr4 191154276 + 136293077 136293853 LTR17 781 + 0 781 51546 327 1 0 409 0 5 32 0 1 7 chain 9898 chr4 191154276 + 136312074 136312275 MSTA 426 - 19 240 161075 76 19 39 43 21 27 10 6 0 26 chain 42857 chr4 191154276 + 136312307 136312769 L1PA2 6032 - 2 464 65586 462 chain 32584 chr4 191154276 + 136325102 136325543 MLT2A1 477 + 0 476 79884 169 4 1 11 0 1 23 0 1 168 2 0 11 3 1 12 0 40 38 chain 425013 chr4 191154276 + 136325544 136337777 HERVL-int 5654 + 0 5654 9420 416 0 2 429 0 1 224 38 39 71 4 6 19 6 44 93 0 1 168 6646 0 577 1 2 120 1 0 4 0 1 393 9 1 77 2 1 5 0 1 444 0 1 322 5 0 656 7 8 68 0 29 678 8 6 317 4 5 376 1 5 44 chain 127616 chr4 191154276 + 136327590 136329115 LTR12C 1709 + 0 1709 28668 164 1 0 648 0 40 119 0 41 99 1 0 6 2 0 107 0 4 54 0 1 119 0 102 205 chain 141879 chr4 191154276 + 136329810 136331958 HERVK22-int 3844 + 1400 3305 25844 191 0 4 13 6 5 206 0 5 66 10 13 6 3 0 80 253 0 304 2 13 32 4 8 316 5 6 380 1 0 70 2 1 5 1 0 18 1 0 36 2 1 18 2 0 40 4 0 10 1 0 45 2 0 13 chain 54267 chr4 191154276 + 136343524 136344218 L1PA7 6471 - 2 698 56187 10 2 0 160 1 2 15 0 1 4 1 2 373 6 7 122 chain 43713 chr4 191154276 + 136344226 136344744 L1PA7 6471 + 5232 5756 64553 158 0 5 47 0 1 99 0 1 78 1 0 135 chain 20647 chr4 191154276 + 136359691 136360057 THE1B 368 - 0 368 125140 182 15 14 51 71 74 47 chain 538426 chr4 191154276 + 136368698 136374704 L1PA3long 6157 + 5 6157 3084 147 0 1 97 5 6 317 0 4 61 0 6 133 1 129 294 5 8 2313 0 2 395 1 0 4 0 1 1958 0 1 275 chain 18492 chr4 191154276 + 136412674 136413061 THE1D 372 - 0 372 131527 56 1 0 4 6 7 80 1 0 33 34 36 17 4 0 7 5 9 11 11 11 22 8 10 15 18 0 54 chain 16557 chr4 191154276 + 136419539 136419838 L1PA15 4387 - 34 315 136772 22 5 0 15 2 0 45 7 4 52 1 0 9 4 0 21 1 0 52 35 33 28 chain 187461 chr4 191154276 + 136446410 136448663 L1PA7 6471 + 3233 6469 20296 480 0 18 61 0 1 210 2 0 315 0 1 288 0 2 30 0 1 187 0 963 256 0 1 412 2 0 10 chain 100155 chr4 191154276 + 136460830 136462451 L1PA7 6471 - 5 1358 36730 7 4 0 60 7 0 77 2 1 5 0 1 320 0 10 184 0 1 29 25 15 53 2 1 17 314 0 57 10 7 68 0 70 297 10 0 73 chain 13794 chr4 191154276 + 136532665 136532839 L1PA4 6152 + 5975 6151 145288 25 8 10 141 chain 289914 chr4 191154276 + 136545703 136555994 L1PA11 4918 - 351 4762 14026 13 1 0 14 32 23 9 4 0 20 1 0 13 2 0 58 1 0 11 3 0 11 12 11 15 0 2 36 5 0 17 1 7 51 1 2 153 1 0 41 14 13 51 3 2 77 40 48 5 2 0 130 0 1 47 0 1 123 1 2 19 0 1 104 6 4 178 6 21 190 0 1 131 0 1 76 6 13 80 1 2 18 0 7 6 9 0 197 0 1 122 4 0 129 4 12 34 1 0 59 10 11 188 0 3 137 5843 0 95 0 1 112 0 4 112 100 22 66 29 32 71 22 40 17 23 19 180 0 1 143 0 7 143 1 0 282 3 1 250 7 4 33 1 0 24 chain 47124 chr4 191154276 + 136563039 136563564 SVA_B 1603 + 1077 1603 61109 213 0 1 312 chain 77115 chr4 191154276 + 136573699 136574741 MER11C 1089 - 20 1089 44909 4 0 1 91 19 27 17 10 9 54 0 1 127 0 1 38 1 0 5 0 4 20 0 1 102 9 10 236 0 4 62 0 9 99 2 1 146 chain 39088 chr4 191154276 + 136575699 136576138 L1PA4 6152 + 5703 6143 70619 414 0 1 25 chain 5564 chr4 191154276 + 136583546 136583610 Tigger1 2417 - 1441 1505 189448 64 chain 13694 chr4 191154276 + 136607564 136607760 L1PA10 4194 + 2822 3018 145622 111 3 0 6 5 8 71 chain 100875 chr4 191154276 + 136608238 136609483 L1PA7 6471 - 1427 2659 36502 33 0 17 39 1 0 152 0 1 158 0 1 632 5 0 7 26 0 192 chain 115672 chr4 191154276 + 136609483 136610923 L1PA7 6471 + 5050 6468 32567 399 0 1 120 24 0 51 6 9 343 0 1 485 3 0 9 chain 88838 chr4 191154276 + 136637268 136638252 L1PA3long 6157 - 0 995 40067 147 1 8 694 0 4 142 chain 5541 chr4 191154276 + 136667967 136668030 L1M4c 1769 + 1664 1727 189646 63 chain 256941 chr4 191154276 + 136668958 136671921 L1PA4 6152 - 11 2945 15886 175 0 2 324 41 5 1021 0 3 232 0 1 604 0 1 566 chain 6415 chr4 191154276 + 136677113 136677334 MER31A 484 - 228 448 181908 40 126 125 55 chain 26453 chr4 191154276 + 136688459 136688833 L1PA8 5853 + 5486 5853 98224 78 1 0 46 2 0 69 1 0 8 19 18 31 6 5 19 1 0 93 chain 2937 chr4 191154276 + 136693682 136693717 L1MCb 1641 - 1563 1598 226389 35 chain 44511 chr4 191154276 + 136694472 136695056 LTR12 884 + 0 858 63566 92 0 132 77 5 6 74 2 0 63 0 40 90 0 103 181 chain 48745 chr4 191154276 + 136695545 136696245 LTR12_ 688 - 2 688 59916 171 7 6 134 0 4 199 92 9 17 3 69 77 chain 2847 chr4 191154276 + 136714973 136715003 LTR77 607 - 40 70 227890 30 chain 20942 chr4 191154276 + 136747969 136748264 L1PA8 5853 + 5564 5853 124142 46 2 0 68 2 1 9 1 0 56 2 1 15 2 1 92 chain 14106 chr4 191154276 + 136768307 136768481 L1PA7 6471 - 2738 2921 144193 105 0 9 69 chain 214363 chr4 191154276 + 136768482 136771346 L1PA7 6471 + 3744 6461 18205 258 6 1 137 0 1 46 0 4 111 11 4 199 0 2 114 1 0 417 6 7 14 0 5 43 1 0 259 0 1 34 0 1 212 0 2 215 153 0 22 0 2 207 0 1 202 8 7 48 0 1 140 chain 9632 chr4 191154276 + 136770607 136770718 LTR12_ 688 - 318 429 162431 111 chain 10971 chr4 191154276 + 136779418 136779539 L1PA5 6144 - 0 121 156315 121 chain 75484 chr4 191154276 + 136785111 136785982 MER11D 897 - 0 897 45773 80 0 2 207 4 27 299 0 1 281 chain 83669 chr4 191154276 + 136793930 136794887 L1P1 4361 - 568 1523 42046 622 1 0 6 1 0 327 chain 9913 chr4 191154276 + 136794887 136794996 L1P1 4361 + 3805 3914 160561 109 chain 7244 chr4 191154276 + 136794996 136795086 L1PA5 6144 + 6042 6132 175804 90 chain 27972 chr4 191154276 + 136804236 136804535 AluYa5 310 - 2 310 93106 27 0 9 272 chain 18144 chr4 191154276 + 136837634 136837856 L1PA7 6471 + 6247 6469 132479 222 chain 14919 chr4 191154276 + 136848057 136848230 L1PA5 6144 + 5970 6144 141576 30 1 2 142 chain 43563 chr4 191154276 + 136850998 136851648 L1PA10 4194 + 3505 4150 64728 182 24 23 61 21 22 86 14 15 188 3 0 34 3 0 34 chain 29128 chr4 191154276 + 136859325 136859632 AluYa5 310 - 3 310 88417 307 chain 28499 chr4 191154276 + 136862462 136862766 AluYa5 310 - 6 310 91185 304 chain 355371 chr4 191154276 + 136876487 136881008 HERVK9-int 4720 - 2 4370 11463 8 0 1 4 1 0 193 0 1 458 1 0 121 0 13 27 205 0 544 0 13 384 0 37 414 14 1 18 0 1 4 1 0 1651 1 2 130 0 1 342 chain 40102 chr4 191154276 + 136900654 136901100 L1PA4 6152 - 1 446 69178 189 1 0 256 chain 34970 chr4 191154276 + 136901100 136901485 L1PA4 6152 + 5336 5721 76228 385 chain 15070 chr4 191154276 + 136917083 136917247 U1 164 - 0 164 141109 164 chain 10187 chr4 191154276 + 136926114 136926249 L1PA7 6471 + 6324 6461 159682 24 6 8 105 chain 14195 chr4 191154276 + 136979128 136979305 L1PA5 6144 - 5 184 143895 141 1 4 6 1 0 28 chain 96928 chr4 191154276 + 136991747 136992837 L1PA5 6144 + 5051 6141 37576 1090 chain 18702 chr4 191154276 + 137001804 137002153 THE1D 372 - 17 372 130941 14 2 1 64 10 11 43 48 54 10 3 0 5 0 3 87 8 6 41 2 4 12 chain 41807 chr4 191154276 + 137019980 137020532 LTR12D 1347 - 0 671 66887 85 1 0 112 0 101 28 3 0 94 6 7 107 0 3 104 0 18 12 chain 6074 chr4 191154276 + 137119865 137119946 MER2 342 - 129 211 184621 77 0 1 4 chain 61331 chr4 191154276 + 137122147 137122895 LTR17 781 + 0 770 52185 119 0 9 179 10 0 20 0 1 386 0 22 34 chain 36590 chr4 191154276 + 137132097 137132600 L1PA7 6471 - 1 502 74111 94 8 0 7 8 13 53 6 8 5 2 0 288 0 1 32 chain 5308 chr4 191154276 + 137133672 137133731 L1PA2 6032 - 8 67 191928 59 chain 24132 chr4 191154276 + 137164097 137164379 AluY 311 + 10 293 109570 122 0 1 160 chain 238421 chr4 191154276 + 137175134 137178205 L1PA8 5853 + 2723 5853 16856 78 0 5 6 1 0 123 11 15 30 0 4 134 7 9 63 19 19 595 0 7 130 0 1 7 1 46 585 0 1 227 2 1 4 0 1 188 1 0 7 2 0 78 0 1 403 0 1 72 1 0 45 2 0 69 2 1 15 11 9 32 7 6 19 2 1 92 chain 37569 chr4 191154276 + 137202256 137202888 LTR9B 643 - 0 643 72722 40 20 18 124 39 40 155 0 1 43 0 1 15 1 0 95 20 28 10 5 6 25 16 18 24 chain 4518 chr4 191154276 + 137205252 137205312 LTR12_ 688 + 119 180 200585 23 1 2 36 chain 568558 chr4 191154276 + 137214672 137220701 L1HS 6032 - 0 6030 9 5959 0 1 70 chain 3757 chr4 191154276 + 137225068 137225111 ERVL-B4-int 2334 - 1830 1873 211014 43 chain 90433 chr4 191154276 + 137231239 137232355 L1PA6 6164 - 2 1124 39497 145 14 14 86 2 1 421 1 2 5 1 0 135 0 1 28 0 7 20 2 1 256 chain 42856 chr4 191154276 + 137262539 137263000 L1PA2 6032 + 5566 6027 65590 461 chain 19334 chr4 191154276 + 137263034 137263311 L1PA15 4387 + 2719 3006 129131 13 3 5 70 0 4 123 0 1 8 0 4 13 16 15 31 chain 23450 chr4 191154276 + 137263311 137263575 AluYf4 310 + 0 263 113385 207 1 0 56 chain 126436 chr4 191154276 + 137272972 137274358 L1PA3long 6157 - 1 1386 28961 4 1 0 1381 chain 235629 chr4 191154276 + 137281961 137284831 L1PA6 6164 + 3281 6152 16998 97 7 11 236 1 0 38 22 5 362 2 0 745 3 4 86 13 21 377 0 1 52 4 11 48 1 0 23 0 1 753 chain 4392 chr4 191154276 + 137291732 137291825 MER2 342 + 45 148 202037 6 4 0 17 19 33 47 chain 7136 chr4 191154276 + 137303531 137303662 ERVL-int 1947 + 1360 1492 176508 21 34 35 76 chain 9209 chr4 191154276 + 137304780 137304933 Tigger3a 397 - 85 240 164514 84 22 24 47 chain 6691 chr4 191154276 + 137308109 137308198 L1PA8 5853 - 0 90 179752 51 1 2 37 chain 4873 chr4 191154276 + 137317013 137317134 LTR12C 1709 + 961 1086 196562 41 47 51 33 chain 26387 chr4 191154276 + 137415919 137416219 L1PA4 6152 + 5843 6143 98459 300 chain 7385 chr4 191154276 + 137422109 137422248 Tigger1 2417 + 2202 2336 174877 6 0 1 25 4 0 22 3 0 18 18 19 43 chain 30814 chr4 191154276 + 137490509 137490855 L1PA3long 6157 - 10 355 82844 249 1 0 96 chain 60550 chr4 191154276 + 137515654 137516535 LTR12D 1347 + 400 1339 52544 131 41 0 5 0 31 34 4 5 92 15 8 241 0 79 23 4 3 30 1 0 40 9 5 22 7 8 182 chain 2069 chr4 191154276 + 137556893 137557187 MER41A 554 - 0 293 74284 12 1 0 18 1 0 6 0 1 256 chain 178267 chr4 191154276 + 137558157 137561000 HUERS-P2-int 2744 + 20 2742 21140 11 2 0 11 0 1 12 1 0 20 10 9 7 1 0 50 7 6 16 3 0 10 21 17 73 4 1 5 1 0 10 22 16 20 29 17 50 17 8 41 3 4 6 6 0 23 0 1 23 7 5 5 0 1 88 5 7 72 74 19 65 8 6 243 3 2 15 1 0 94 1 12 135 2 1 4 0 1 124 10 11 213 2 1 636 29 13 25 7 7 37 0 12 35 9 8 55 1 0 71 2 0 25 0 1 5 5 0 39 2 1 9 1 0 7 6 4 14 1 0 25 0 1 14 3 0 10 8 7 16 1 0 9 2 0 5 2 0 12 2 0 27 chain 1675 chr4 191154276 + 137561836 137562074 MER41A 554 - 293 531 74284 238 chain 4983 chr4 191154276 + 137577158 137577222 MLT1A0 366 + 85 149 195335 64 chain 20591 chr4 191154276 + 137588522 137588777 AluSp 311 + 50 304 125330 57 1 0 197 chain 3826 chr4 191154276 + 137628373 137628415 MADE1 96 - 54 96 209984 42 chain 5965 chr4 191154276 + 137637703 137637865 MER61A 341 + 200 341 185563 15 6 5 45 64 44 32 chain 6556 chr4 191154276 + 137697760 137697868 THE1D-int 1627 + 1505 1614 180812 72 1 0 5 14 16 16 chain 29665 chr4 191154276 + 137734276 137734592 AluYb8 318 + 0 316 85979 316 chain 13727 chr4 191154276 + 137754570 137754735 THE1A-int 1579 + 0 168 145522 153 0 3 12 chain 41300 chr4 191154276 + 137754773 137755385 L1PA8 5853 + 5228 5853 67533 55 0 9 272 1 0 44 2 0 69 3 2 9 8 1 6 0 7 10 19 29 19 1 0 12 4 2 54 0 1 24 chain 500023 chr4 191154276 + 137763955 137770568 L1PA7 6471 - 1 6468 6841 12 0 2 4 0 1 19 0 7 88 16 17 39 10 9 85 10 17 27 0 1 194 1 0 89 1 2 228 0 3 102 0 1 82 3 2 69 0 2 789 0 1 4 1 0 262 0 17 235 1 0 177 158 0 79 0 1 217 8 13 75 0 1 11 4 8 360 0 3 94 0 3 109 2 0 82 0 12 176 3 4 581 7 8 44 1 2 646 0 2 3 0 1 125 0 4 62 57 0 8 28 0 489 0 19 235 4 6 397 chain 25984 chr4 191154276 + 137790679 137790963 AluYa5 310 + 27 310 100080 66 1 0 217 chain 24749 chr4 191154276 + 137805260 137805566 AluY 311 + 10 311 106178 108 3 0 15 2 0 178 chain 19547 chr4 191154276 + 137850632 137851336 LTR12C 1709 + 785 1515 128528 16 73 113 154 4 51 83 269 239 22 38 9 4 1 0 10 9 8 21 chain 25314 chr4 191154276 + 137873870 137874214 THE1B 368 - 2 355 103155 58 1 0 4 0 4 91 9 11 25 2 1 127 0 5 27 chain 15696 chr4 191154276 + 137895477 137895810 THE1D 372 - 28 369 139283 31 2 3 72 43 58 11 1 0 67 55 46 41 0 2 10 chain 97366 chr4 191154276 + 137897571 137898703 L1PA5 6144 - 1 1170 37465 238 0 1 88 6 5 475 0 10 125 1 28 199 chain 447186 chr4 191154276 + 137914764 137920749 L1PA8A 6298 - 45 6063 8843 8 0 1 4 0 2 41 1 2 16 0 1 55 0 1 84 12 13 515 0 1 10 6 12 261 11 12 5 1 0 67 1 0 346 0 5 116 0 2 187 0 1 150 9 10 49 3 1 115 0 4 95 0 5 183 1 0 60 12 13 156 0 1 4 6 5 100 0 20 58 2 0 9 0 12 43 5 4 264 54 0 413 0 2 495 0 1 10 14 17 476 3 4 94 0 1 8 0 2 192 3 1 55 8 27 67 14 20 45 9 10 40 9 6 25 0 3 70 1 0 193 0 16 231 3 4 161 1 0 3 1 0 10 1 0 15 2 0 79 6 0 19 14 10 33 1 0 11 7 3 9 1 0 8 chain 3212 chr4 191154276 + 137940359 137940400 MLT2B1 522 - 5 47 220714 30 0 1 11 chain 26930 chr4 191154276 + 137943830 137944130 AluYa5 310 - 14 310 96514 14 2 0 56 2 0 226 chain 11548 chr4 191154276 + 137951538 137951701 L1PA15 4387 - 1202 1367 154115 55 5 6 44 0 1 59 chain 24229 chr4 191154276 + 137955511 137955815 AluY 311 + 12 311 109044 93 1 0 10 9 5 6 0 1 178 1 0 6 chain 15880 chr4 191154276 + 138006865 138007281 MLT2A2 560 - 0 560 138709 38 90 225 5 0 1 23 92 0 10 0 97 19 4 7 135 chain 53844 chr4 191154276 + 138012823 138013453 L1PA5 6144 + 5498 6134 56457 455 11 12 152 0 5 12 chain 126358 chr4 191154276 + 138093097 138095204 L1PA8 5853 + 4068 5853 28992 464 14 13 44 1 0 69 20 21 106 10 5 219 0 2 56 317 10 8 0 2 477 2 1 45 2 0 67 14 12 10 49 42 14 9 8 90 chain 4435 chr4 191154276 + 138110060 138110116 MLT1B 390 - 7 63 201521 56 chain 9431 chr4 191154276 + 138142440 138142616 L1MA7 2200 + 1888 2043 163399 55 11 9 25 33 14 52 chain 59141 chr4 191154276 + 138143982 138144763 LTR12 884 + 0 884 53308 25 2 1 29 0 41 178 1 68 35 2 0 196 6 5 81 1 0 20 0 1 5 7 6 193 chain 147453 chr4 191154276 + 138156337 138159467 L1PBa 3878 - 329 3310 24970 30 0 1 109 0 2 110 1 0 4 7 8 56 0 1 8 11 9 24 7 8 15 0 1 37 0 4 57 8 10 145 5 6 30 0 1 33 43 42 89 2 0 4 5 0 245 14 13 263 0 2 266 1 0 49 10 9 24 0 1 54 5 14 131 9 14 28 0 1 69 28 29 22 54 56 84 0 3 16 873 699 45 chain 35698 chr4 191154276 + 138176747 138177240 MER9a3 513 - 0 476 75271 71 0 8 22 4 1 155 1 0 66 19 20 59 0 1 52 23 0 21 chain 4695 chr4 191154276 + 138208498 138208564 HSMAR1 1287 + 0 67 198580 24 1 2 41 chain 14429 chr4 191154276 + 138271080 138271371 AluSq2 311 + 10 297 143122 26 29 25 79 17 17 19 7 7 23 12 13 62 4 3 13 chain 10646 chr4 191154276 + 138271433 138271697 L1MA7 2200 + 1552 1816 157614 99 116 116 49 chain 443068 chr4 191154276 + 138272360 138278197 L1PA8 5853 + 51 5847 8951 21 2 0 10 1 0 6 70 31 179 7 11 546 0 10 22 13 14 38 0 1 204 1 6 48 38 39 392 1 0 105 3 4 181 6 1 106 1 0 248 1 2 83 1 6 466 0 4 47 1 0 24 0 1 226 17 18 136 0 1 339 2 4 4 1 0 201 0 1 29 2 1 33 4 6 52 2 1 64 9 10 336 0 3 37 1 0 554 23 1 35 2 0 11 2 0 408 0 1 145 1 0 45 2 0 70 1 0 8 0 6 7 7 0 40 2 1 19 10 9 78 chain 3590 chr4 191154276 + 138286534 138286704 L1MCa 1829 + 1628 1726 213819 5 3 0 20 47 18 27 51 11 17 chain 24693 chr4 191154276 + 138341292 138341596 AluY 311 + 6 311 106471 126 0 1 178 chain 37654 chr4 191154276 + 138390151 138390685 MER41C 542 + 1 542 72616 48 0 1 110 0 1 35 7 8 67 1 0 4 28 30 8 0 3 226 chain 36072 chr4 191154276 + 138399464 138399913 LTR2 463 + 0 463 74797 55 0 3 320 9 20 65 chain 525626 chr4 191154276 + 138400695 138407717 HERVE_a-int 7009 + 156 6997 4616 29 3 1 73 2 0 4 1 0 4 2 1 22 1 0 4 9 7 8 1 0 14 15 10 4 1 0 7 1 0 6 13 10 18 28 0 35 4 2 24 1 0 45 1 0 20 1 0 54 1 0 34 1 0 98 1 0 12 1 0 49 1 0 14 1 0 51 6 4 23 1 0 67 1 0 26 1 0 8 1 0 8 0 4 60 3 2 29 10 9 36 2 0 12 1 0 51 2 1 21 1 0 9 8 7 5 1 0 12 4 0 23 1 0 3 1 0 15 1 0 23 1 0 5 1 0 5 1 0 18 1 0 4 1 0 57 2 0 58 1 0 22 1 0 16 1 0 116 2 1 17 1 0 20 2 1 10 1 0 18 1 0 10 2 1 4 1 0 18 1 0 43 1 0 38 1 0 62 2 1 35 2 1 7 1 0 35 1 0 43 1 0 22 2 1 17 2 1 23 2 1 105 2 1 25 6 4 29 36 30 8 1 0 143 2 1 14 1 0 206 1 0 405 1 0 90 1 0 495 1 0 72 0 1 610 0 1 98 0 1 314 1 5 519 0 1 130 9 0 114 1 0 26 1 0 9 1 0 67 7 6 8 1 0 41 1 0 23 1 0 86 1 0 13 2 1 257 2 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 11 1 0 78 5 3 120 0 1 17 1 0 43 1 0 30 2 1 11 1 0 15 8 5 7 1 0 37 2 1 20 1 0 47 1 0 4 1 0 22 12 10 54 1 0 11 4 0 21 8 5 54 3 1 27 1 0 30 1 0 6 3 1 12 0 2 23 2 0 33 5 3 15 32 24 25 2 0 6 chain 40777 chr4 191154276 + 138407735 138408198 LTR2 463 + 0 463 68203 463 chain 552285 chr4 191154276 + 138417432 138423442 L1PA2 6032 + 12 6030 1160 1425 0 2 1704 10 0 874 0 13 476 0 1 617 0 1 335 0 1 569 chain 32952 chr4 191154276 + 138458851 138459240 L1PA5 6144 - 0 389 79291 389 chain 391645 chr4 191154276 + 138488320 138493426 L1PA8A 6298 - 7 5160 10401 107 0 1 13 0 1 490 9 11 17 16 6 158 0 4 253 4 43 153 0 1 366 0 1 188 0 2 604 0 1 58 0 8 250 1 2 71 5 8 102 0 1 278 1 0 114 9 10 200 0 3 220 0 4 13 0 1 26 0 1 92 44 15 5 0 2 72 0 1 12 1 2 86 1 0 77 9 7 497 2 1 4 1 0 316 18 31 143 chain 136701 chr4 191154276 + 138500241 138501772 L1PA4 6152 - 0 1535 26691 168 1 2 399 0 1 89 0 3 861 1 0 12 chain 147189 chr4 191154276 + 138515417 138517072 L1PA4 6152 - 1 1658 25004 258 0 1 309 0 1 1088 chain 93091 chr4 191154276 + 138517072 138518101 L1PA4 6152 + 3455 4485 38517 319 1 2 709 chain 42877 chr4 191154276 + 138530268 138530743 L1PA3long 6157 - 8 485 65563 142 2 0 6 0 4 325 chain 59085 chr4 191154276 + 138534049 138534804 LTR17 781 + 0 781 53345 117 8 19 172 10 0 19 0 1 281 0 1 104 2 24 35 0 1 7 chain 24433 chr4 191154276 + 138540534 138540836 AluSp 311 + 0 298 107897 18 6 2 278 chain 12408 chr4 191154276 + 138566049 138566231 MER30 238 + 36 238 150603 68 6 26 23 6 0 8 0 6 71 chain 28995 chr4 191154276 + 138570191 138570503 AluYb8 318 + 0 312 89015 312 chain 5447 chr4 191154276 + 138583241 138583468 LTR25 836 + 410 634 190554 38 7 2 12 128 131 36 1 0 5 chain 129566 chr4 191154276 + 138595578 138597012 L1PA3long 6157 - 4 1438 28187 138 1 0 508 0 1 787 chain 25862 chr4 191154276 + 138600394 138600746 THE1A 353 + 0 353 100597 62 4 3 19 0 1 4 1 0 20 2 1 92 1 0 77 0 4 70 chain 5151 chr4 191154276 + 138611610 138611984 MLT1C 463 - 26 406 193537 45 195 223 14 87 65 33 chain 14130 chr4 191154276 + 138649540 138649730 MER30 238 + 31 238 144106 85 0 22 41 2 0 11 3 0 48 chain 1027 chr4 191154276 + 138654603 138654716 L1PA8 5853 + 5562 5673 139491 45 3 1 65 chain 118141 chr4 191154276 + 138654723 138656134 LTR12C 1709 + 15 1706 31756 245 0 1 389 0 278 184 1 0 5 3 1 106 0 4 478 chain 1590 chr4 191154276 + 138656148 138656323 L1PA8 5853 + 5679 5851 139491 13 10 9 19 26 25 15 1 0 91 chain 463329 chr4 191154276 + 138704817 138710955 L1PA7 6471 + 5 6470 8282 151 5 0 8 0 5 32 11 10 13 57 52 53 74 271 47 11 11 18 19 33 12 5 15 57 1 76 20 0 1 4 1 0 148 7 28 132 2 0 5 5 7 546 0 2 5 0 3 373 0 1 61 0 5 275 9 8 26 4 0 121 0 1 133 2 0 115 6 10 412 6 7 91 1 0 88 1 0 52 0 4 282 0 1 144 0 1 28 0 1 4 3 0 970 0 1 640 0 5 63 1 0 10 0 1 146 4 0 51 3 4 407 1 2 156 chain 16421 chr4 191154276 + 138754107 138755123 MLT2B2 565 - 10 518 137151 23 38 33 10 0 1 37 38 13 90 33 88 20 620 80 59 20 26 28 chain 24474 chr4 191154276 + 138757290 138757640 MLT2A2 560 + 0 560 107683 123 1 0 45 14 12 74 4 217 89 chain 9394 chr4 191154276 + 138764307 138764408 L1PA2 6032 - 799 900 161761 101 chain 72505 chr4 191154276 + 138764408 138765192 L1PA2 6032 + 5246 6030 47264 784 chain 58081 chr4 191154276 + 138769071 138769735 L1PA4 6152 - 965 1614 53832 102 17 2 545 chain 84205 chr4 191154276 + 138769735 138770692 L1PA4 6152 + 5190 6147 41817 188 1 0 122 0 1 646 chain 22418 chr4 191154276 + 138772113 138772375 L1PA7 6471 - 10 272 118385 262 chain 72737 chr4 191154276 + 138774611 138775606 LTR12D 1347 + 0 1347 47148 33 0 4 148 0 21 58 0 8 9 7 0 17 2 38 51 19 20 129 1 32 84 24 58 15 0 24 179 0 200 219 chain 123699 chr4 191154276 + 138788403 138789790 L1PA4 6152 + 4756 6152 29812 207 0 1 928 1 0 114 0 7 131 0 2 6 chain 13763 chr4 191154276 + 138789898 138790196 L1PB1 5432 - 48 318 145390 14 1 0 24 2 0 14 1 0 5 2 0 30 12 1 14 6 5 30 15 14 12 2 1 53 15 9 12 1 0 8 1 0 24 chain 28582 chr4 191154276 + 138814623 138814931 AluYa5 310 - 3 310 90816 181 1 0 126 chain 39239 chr4 191154276 + 138815308 138815804 L1PA7 6471 + 5102 5622 70400 83 0 9 61 0 1 46 3 0 5 15 31 185 0 1 98 chain 30782 chr4 191154276 + 138815807 138816172 L1PA7 6471 + 5630 6006 82897 75 2 0 189 0 2 60 0 11 39 chain 36319 chr4 191154276 + 138816173 138816613 L1PA7 6471 + 6022 6454 74478 303 8 0 129 chain 231687 chr4 191154276 + 138834166 138836791 L1PA5 6144 - 0 2639 17221 110 0 5 467 3 0 68 1 2 1522 0 11 454 chain 172080 chr4 191154276 + 138836791 138839104 L1P2 5180 + 1513 3520 21759 4 0 4 492 0 1 155 0 1 149 0 1 160 0 1 234 1 0 74 313 0 388 1 0 38 1 2 303 chain 129203 chr4 191154276 + 138863042 138864591 LTR12C 1709 + 0 1709 28265 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 481 chain 26379 chr4 191154276 + 138908174 138908678 L1MA5A 2387 + 32 500 98499 5 0 1 10 2 0 7 2 1 17 71 51 26 1 0 6 6 0 9 22 19 18 2 0 104 1 0 175 2 1 18 chain 27776 chr4 191154276 + 138940694 138941003 AluYf4 310 + 0 309 93777 309 chain 5588 chr4 191154276 + 138973735 138973799 LTR12C 1709 - 991 1055 189202 64 chain 16286 chr4 191154276 + 138973831 138974014 LTR12C 1709 - 598 781 137518 183 chain 20494 chr4 191154276 + 138978385 138978734 THE1B 368 + 0 356 125647 111 0 3 6 5 3 53 0 2 6 34 30 13 1 11 6 1 0 62 7 6 44 chain 35374 chr4 191154276 + 138981486 138982124 L1PA15 4387 - 437 1057 75701 17 1 0 28 17 15 29 53 48 26 1 0 117 30 30 30 9 9 11 25 16 244 chain 56367 chr4 191154276 + 138986110 138986756 L1PA5 6144 + 5493 6144 54923 492 7 0 6 0 12 141 chain 22508 chr4 191154276 + 139005034 139005314 AluSc 308 + 10 295 117996 43 1 11 221 5 0 10 chain 89776 chr4 191154276 + 139008914 139010403 LTR12C 1709 - 0 1709 39729 74 25 23 122 10 12 12 1 0 161 6 6 36 0 20 15 44 13 97 8 256 25 1 0 10 0 78 141 0 2 81 0 1 41 50 30 72 0 43 39 12 9 74 42 0 27 83 0 151 0 9 29 chain 9647 chr4 191154276 + 139031347 139031460 MER41C 542 + 421 534 162368 113 chain 15063 chr4 191154276 + 139072698 139072903 L1PA8 5853 - 0 201 141128 93 1 0 19 2 1 48 1 0 13 5 4 23 chain 33760 chr4 191154276 + 139099319 139099747 L1PA8 5853 - 183 607 78003 62 3 1 43 1 0 288 2 1 29 chain 6115 chr4 191154276 + 139099747 139099820 L1PA8 5853 + 5780 5853 184311 73 chain 14457 chr4 191154276 + 139171726 139171915 L1PA16 3655 + 3382 3569 143028 25 3 1 161 chain 12118 chr4 191154276 + 139211978 139212174 L1PA17 2846 - 153 343 151748 43 1 0 19 2 1 97 1 0 9 10 7 14 chain 10658 chr4 191154276 + 139237295 139237557 L1PB1 5432 - 9 259 157576 5 0 1 13 1 0 13 1 0 21 52 46 12 9 1 11 2 0 4 1 0 16 1 0 33 0 5 6 1 4 11 2 1 47 chain 67241 chr4 191154276 + 139253838 139254700 THE1B-int 1605 - 6 873 49550 563 14 1 12 0 13 51 2 3 39 6 9 68 0 1 107 chain 70110 chr4 191154276 + 139272746 139273559 L1PA8 5853 - 951 1763 48228 5 2 0 68 0 1 738 chain 75562 chr4 191154276 + 139273559 139274532 L1PA8 5853 + 4882 5853 45738 111 0 1 79 4 5 15 0 1 229 0 1 109 0 1 128 1 0 46 2 0 68 0 9 7 12 1 47 2 1 19 1 0 93 chain 11065 chr4 191154276 + 139275621 139275766 L1P2 5180 - 4311 4454 155942 75 2 1 6 1 0 61 chain 516831 chr4 191154276 + 139275929 139282047 L1PA5 6144 + 1 6144 5506 122 1 15 292 0 1 177 0 4 83 0 1 470 15 6 236 1 6 1590 3 2 170 2 1 19 0 1 61 0 2 52 5 11 59 0 1 129 2 1 4 0 1 392 1 2 485 2 1 259 7 8 384 1 0 444 0 1 313 1 0 18 0 1 318 chain 69005 chr4 191154276 + 139293257 139294340 L1MA3 4352 + 37 1106 48803 49 0 1 68 1 0 17 6 0 134 4 0 9 36 41 19 0 3 11 0 2 5 7 5 45 0 5 93 4 4 27 34 7 120 0 1 50 13 24 91 1 0 6 1 0 131 1 2 72 3 2 25 chain 11636 chr4 191154276 + 139323515 139323678 THE1D 372 - 0 164 153747 32 1 0 5 8 10 117 chain 39543 chr4 191154276 + 139346291 139346845 MLT2A2 560 + 0 558 69968 112 6 5 63 1 0 29 1 0 83 1 0 107 3 14 70 6 2 42 1 2 29 chain 121180 chr4 191154276 + 139355871 139357400 L1PA8 5853 + 4292 5812 30644 77 0 1 211 3 1 152 0 1 273 3 1 555 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 52 chain 4503 chr4 191154276 + 139375554 139375616 MER20 218 - 140 202 200745 9 0 1 48 1 0 4 chain 43653 chr4 191154276 + 139381023 139381510 L1PA4 6152 - 1 488 64626 487 chain 158528 chr4 191154276 + 139391704 139393787 L1PA11 4918 - 364 2442 23527 14 32 23 9 4 0 20 1 0 13 2 0 81 2 1 67 1 0 179 5 25 689 13 16 44 0 3 656 2 0 125 12 11 27 1 0 5 9 0 70 chain 168158 chr4 191154276 + 139400045 139402111 L1PA5 6144 - 2 6144 22268 14 5 2 128 7 0 192 0 1 157 0 1 391 8 701 218 0 9 624 0 3368 177 10 24 135 chain 105771 chr4 191154276 + 139417781 139419320 L1PB1 5432 - 40 1563 35312 22 1 0 22 2 0 16 1 0 5 3 1 17 19 9 4 1 0 15 1 0 21 0 14 9 1 0 15 10 9 45 2 0 9 5 1 11 2 1 8 4 3 21 12 11 153 2 1 35 0 1 102 0 8 182 3 0 345 1 0 51 4 0 260 5 3 87 0 1 5 chain 413988 chr4 191154276 + 139423347 139428731 L1PA7 6471 - 4 5092 9700 52 1 2 189 0 1 245 1 15 343 1 4 285 3 0 32 0 1 276 1 0 118 0 1 231 0 17 29 317 0 798 16 1 5 2 0 91 0 18 140 0 3 47 11 4 33 3 2 709 0 2 78 1 0 53 18 1 382 0 1 94 0 4 23 1 0 60 0 1 88 1 2 532 5 6 69 chain 25163 chr4 191154276 + 139425155 139425447 AluYf4 310 - 9 302 103948 97 0 1 195 chain 56711 chr4 191154276 + 139451594 139452283 L1PA7 6471 + 5783 6466 54711 210 9 7 458 4 0 8 chain 6844 chr4 191154276 + 139457835 139457925 MER21A 919 - 270 355 178631 75 5 0 10 chain 185140 chr4 191154276 + 139464330 139468861 L1PA8A 6298 + 1137 5379 10052 101 5 6 660 0 1 39 0 1 59 0 4 188 11 10 12 1 0 105 0 1 176 3 1 607 0 3 199 0 17 39 1 0 51 1 5 19 0 5 259 10 4 49 0 1 211 0 2 290 0 1 239 315 0 188 0 4 273 0 1 68 0 1 110 1 2 4 1 0 214 15 5 7 chain 406889 chr4 191154276 + 139468877 139473208 L1HS 6032 + 1701 6032 9879 4331 chain 36979 chr4 191154276 + 139473239 139474144 L1PA8A 6298 + 5379 6288 10052 110 2 1 89 0 1 143 1 2 316 0 3 244 chain 18453 chr4 191154276 + 139474636 139474904 LTR12C 1709 + 1463 1709 131632 78 1 0 45 24 4 29 7 6 84 chain 115910 chr4 191154276 + 139490788 139492071 L1PA4 6152 + 4863 6151 32493 7 0 1 433 0 4 843 chain 29428 chr4 191154276 + 139492077 139492408 L1PA4 6152 + 5812 6143 86941 331 chain 18647 chr4 191154276 + 139494039 139494252 L1PA3long 6157 - 0 213 131095 48 0 1 123 1 0 41 chain 24196 chr4 191154276 + 139499051 139499393 THE1B 368 - 0 368 109239 118 25 52 29 2 1 168 chain 32582 chr4 191154276 + 139503279 139503728 MLT2A1 477 + 0 477 79888 46 0 1 122 9 6 4 1 0 26 5 2 178 3 37 55 chain 11791 chr4 191154276 + 139525983 139526606 L1MA9 1812 - 111 672 153082 20 295 239 18 13 9 25 4 3 45 60 59 35 12 11 41 17 18 38 chain 4098 chr4 191154276 + 139526649 139526826 L1M3 994 + 32 201 205978 5 2 0 15 6 9 14 1 0 23 82 73 17 0 1 12 chain 29267 chr4 191154276 + 139529801 139530120 AluYb9 318 + 0 315 87708 118 4 0 197 chain 24242 chr4 191154276 + 139542618 139542932 LTR8 732 + 0 327 108979 56 1 10 56 0 4 201 chain 57227 chr4 191154276 + 139542940 139543690 LTR17 781 - 0 781 54384 48 1 23 168 0 10 40 29 30 135 1 0 14 1 0 313 chain 167203 chr4 191154276 + 139546288 139548211 HERV17-int 4347 - 0 1924 22369 170 16 11 219 0 5 315 0 1 1203 chain 11557 chr4 191154276 + 139548211 139548353 LTR17 781 - 642 781 154075 50 3 0 89 chain 20946 chr4 191154276 + 139563489 139563784 AluSp 311 - 16 300 124126 77 22 6 126 1 6 69 chain 5591 chr4 191154276 + 139573874 139573992 MER31B 477 - 211 449 189165 18 3 125 31 22 20 44 chain 5840 chr4 191154276 + 139574024 139574153 L1MB7 1623 + 1366 1472 186764 4 1 0 52 1 0 7 33 15 6 3 0 22 chain 34183 chr4 191154276 + 139582675 139583190 MER41C 542 - 25 542 77372 88 30 31 71 6 5 136 21 21 53 0 1 61 0 1 49 chain 29816 chr4 191154276 + 139613045 139613413 MLT2A1 477 - 101 468 85392 172 0 1 23 0 1 9 5 2 159 chain 48739 chr4 191154276 + 139639382 139640017 PABL_A 660 - 2 660 59922 84 0 1 4 9 8 421 8 7 40 0 9 49 0 15 20 chain 23809 chr4 191154276 + 139653308 139653686 THE1D 372 - 0 372 111425 147 1 0 25 14 16 89 11 15 6 3 0 14 13 4 24 1 0 15 0 2 15 chain 118020 chr4 191154276 + 139659919 139661294 SVA_C 1631 + 0 1624 31798 17 0 3 270 0 1 166 0 39 109 1 37 39 1 38 118 0 134 47 1 0 606 chain 34144 chr4 191154276 + 139673824 139674281 L1PA16 3655 - 78 530 77420 145 21 17 211 1 0 79 chain 528723 chr4 191154276 + 139700824 139707346 L1PA7 6471 - 30 6465 4334 125 17 18 155 0 5 160 1 15 311 0 7 16 8 1 424 1 0 398 0 2 124 0 2 477 4 1 191 7 8 448 0 4 219 1 2 695 0 1 583 1 0 14 1 0 760 0 7 221 17 11 354 7 6 271 112 0 399 chain 13925 chr4 191154276 + 139735738 139735893 L1PA4 6152 - 0 155 144836 155 chain 24771 chr4 191154276 + 139739459 139739751 AluY 311 + 0 297 106051 130 0 4 43 0 1 119 chain 57491 chr4 191154276 + 139769900 139770555 L1PA6 6164 - 2 658 54246 553 0 1 102 chain 7116 chr4 191154276 + 139770585 139770746 MER58A 224 + 60 223 176641 27 57 61 53 2 0 22 chain 150314 chr4 191154276 + 139774640 139776433 SVA_D 2077 + 16 2076 24563 9 5 0 10 0 42 57 1 0 287 1 0 265 0 40 62 40 0 120 2 0 8 3 1 26 45 5 57 0 178 145 0 98 650 chain 4023 chr4 191154276 + 139775536 139775581 SVA_D 2077 + 1257 1302 122930 45 chain 35078 chr4 191154276 + 139781601 139781996 L1PA7 6471 + 6063 6458 76081 395 chain 6299 chr4 191154276 + 139802333 139802411 MSTA 426 + 320 399 182800 47 0 1 31 chain 560410 chr4 191154276 + 139802435 139808591 L1PA3long 6157 - 0 6157 332 259 1 0 645 0 1 894 0 4 409 0 1 729 1 0 2479 2 0 425 1 0 311 chain 15854 chr4 191154276 + 139838643 139838890 MER30 238 - 0 238 138791 72 6 0 7 1 7 32 5 0 6 3 0 5 3 2 107 chain 7530 chr4 191154276 + 139838991 139839279 MLT1B 390 - 16 304 173974 49 1 0 41 167 169 4 1 0 25 chain 292785 chr4 191154276 + 139849391 139853056 HERVH-int 3825 + 0 3825 13834 212 0 11 110 1 0 197 2 0 11 1 0 4 0 1 24 2 1 8 2 1 12 22 12 14 1 0 12 22 19 7 1 0 28 2 0 12 2 1 13 67 1 67 0 1 369 2 1 69 6 0 5 7 0 111 0 3 9 1 0 339 4 31 290 0 4 130 0 4 926 9 11 32 15 225 257 5 7 223 chain 28114 chr4 191154276 + 139854295 139854697 LTR7 482 + 0 482 92590 66 11 49 109 0 1 14 11 10 17 0 31 17 0 10 41 1 2 115 chain 25213 chr4 191154276 + 139858451 139858751 AluSp 311 + 11 311 103670 300 chain 18495 chr4 191154276 + 139883241 139883800 Tigger2a 444 - 47 302 131511 178 311 7 70 chain 16090 chr4 191154276 + 139899929 139900125 MER41C 542 + 15 212 138091 34 0 1 162 chain 4616 chr4 191154276 + 139910388 139910446 HY4 93 + 37 93 199442 34 2 0 22 chain 15671 chr4 191154276 + 139910889 139911079 MLT1B 390 + 196 386 139362 190 chain 22388 chr4 191154276 + 139924439 139924706 AluSp 311 - 35 301 118546 144 1 0 122 chain 6832 chr4 191154276 + 139932798 139932884 MER41B 635 + 52 138 178714 4 1 0 72 0 1 9 chain 24397 chr4 191154276 + 139963788 139964094 AluSp 311 + 1 308 108090 204 7 8 95 chain 6283 chr4 191154276 + 140024830 140024900 MER21B 843 + 659 729 182934 70 chain 3193 chr4 191154276 + 140033872 140033906 LTR5 62 - 24 58 221052 34 chain 32438 chr4 191154276 + 140075605 140076239 MER4A 717 + 0 717 80133 7 1 0 111 14 5 124 23 27 23 20 21 8 0 11 30 0 1 108 108 185 46 1 0 10 chain 4702 chr4 191154276 + 140079042 140079091 tRNA-Arg-CGY_ 50 + 0 49 198514 49 chain 28838 chr4 191154276 + 140079136 140079526 LTR7 482 - 9 482 89728 84 2 0 5 0 2 71 5 6 13 0 31 36 0 1 73 0 50 101 chain 5323 chr4 191154276 + 140091034 140091093 MER65A 464 + 333 392 191796 59 chain 9024 chr4 191154276 + 140092531 140092659 MER85 139 + 0 139 165471 96 3 14 29 chain 3758 chr4 191154276 + 140093925 140094025 MER44B 551 + 422 528 210991 20 44 50 36 chain 26564 chr4 191154276 + 140118353 140118710 THE1B 368 + 0 368 97790 40 0 15 117 10 9 11 2 0 101 1 0 75 chain 23926 chr4 191154276 + 140128812 140129924 MER65A 464 - 0 464 110776 14 1 0 31 0 3 65 617 6 25 0 1 4 1 0 110 15 27 52 134 83 43 chain 11205 chr4 191154276 + 140129360 140129540 MLT2B3 573 - 396 573 155401 37 26 12 42 1 12 74 chain 38523 chr4 191154276 + 140145300 140145865 MLT2A2 560 - 0 557 71407 75 5 1 9 1 3 54 0 15 63 0 8 70 33 0 64 5 8 91 0 1 95 chain 26019 chr4 191154276 + 140150243 140150539 AluSp 311 - 3 299 99947 296 chain 5074 chr4 191154276 + 140151035 140151099 L1MB8 1703 + 1524 1588 194363 64 chain 25503 chr4 191154276 + 140152708 140153008 AluSc5 308 - 10 308 102210 172 2 0 126 chain 23839 chr4 191154276 + 140173871 140174147 AluSp 311 + 21 297 111259 276 chain 15349 chr4 191154276 + 140198016 140198212 Tigger4b 360 - 25 221 140343 196 chain 6373 chr4 191154276 + 140225662 140225755 MER2 342 - 72 172 182224 44 3 9 14 0 1 32 chain 23649 chr4 191154276 + 140243272 140243616 THE1B 368 + 0 368 112314 40 0 15 113 1 0 30 35 45 125 chain 15127 chr4 191154276 + 140254079 140254266 MER2 342 - 25 212 140978 187 chain 29586 chr4 191154276 + 140268904 140269214 AluYb8 318 + 0 310 86250 310 chain 6422 chr4 191154276 + 140279717 140279785 L1PA6 6164 - 10 78 181841 68 chain 76982 chr4 191154276 + 140335440 140336441 MER11A 1151 + 0 1151 44977 55 0 99 138 8 4 30 0 2 115 0 1 93 0 1 91 0 1 52 6 9 42 2 1 5 0 2 67 1 2 9 6 40 61 0 1 143 0 6 41 0 4 36 chain 33019 chr4 191154276 + 140342969 140343358 L1PA7 6471 - 2 402 79187 10 2 0 41 0 4 323 0 9 13 chain 10993 chr4 191154276 + 140345384 140345606 Tigger3a 397 - 23 257 156228 18 21 14 15 11 13 108 20 27 8 0 10 21 chain 9599 chr4 191154276 + 140348765 140348883 THE1D 372 - 39 157 162607 28 0 1 59 1 0 30 chain 33477 chr4 191154276 + 140348955 140349323 L1PA3long 6157 - 15 383 78445 368 chain 198657 chr4 191154276 + 140349325 140351475 L1PA2 6032 - 0 2150 19307 2150 chain 12176 chr4 191154276 + 140354092 140354244 L1M1 2793 - 1214 1370 151509 13 0 4 139 chain 23881 chr4 191154276 + 140363545 140363992 MLT2A2 560 + 0 560 111022 169 11 9 15 43 42 56 8 122 12 8 9 24 0 5 37 1 0 5 0 1 14 11 3 25 0 4 8 chain 407336 chr4 191154276 + 140363992 140370526 HERVL-int 5654 + 0 5654 9868 123 0 6 26 304 0 175 6 20 48 12 15 179 0 30 59 8 1 629 0 27 5 0 425 32 1 2 100 2 0 520 0 1 230 0 2 140 0 11 137 1 2 127 0 5 99 8 6 389 1 2 488 3 6 496 2 1 28 1 4 171 0 6 270 403 0 39 0 1 200 0 2 79 0 3 53 729 15 16 1 0 8 0 4 95 4 9 87 chain 30411 chr4 191154276 + 140379717 140380261 L1PA15 4387 - 33 560 83660 25 29 23 5 2 0 6 0 2 19 10 7 50 2 1 9 0 2 5 6 0 15 1 0 44 11 10 27 6 8 163 1 0 43 8 6 57 chain 107369 chr4 191154276 + 140385555 140386802 L1PA6 6164 - 2 1257 34874 31 6 12 99 8 10 1103 chain 14878 chr4 191154276 + 140389352 140389536 THE1B 368 - 170 368 141690 26 1 0 117 0 15 40 chain 93109 chr4 191154276 + 140389537 140390965 L1M1 2793 - 651 2118 38627 19 7 5 13 4 11 35 1 0 314 1 5 88 2 1 257 0 1 109 12 9 6 4 0 90 1 0 19 2 58 66 0 10 40 1 3 78 24 21 45 1 0 8 2 0 29 1 0 30 12 7 21 2 0 4 2 0 11 40 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245 127760 240 chain 143434 chr4 191154276 + 140628207 140629799 L1PA4 6152 - 1 1583 25571 479 4 0 588 6 0 515 chain 40713 chr4 191154276 + 140632409 140632949 MER41A 554 - 0 554 68287 12 1 2 55 23 18 58 0 4 280 0 3 100 0 11 11 chain 103365 chr4 191154276 + 140632961 140634247 MER41-int 2638 - 5 1295 35907 405 0 2 321 0 1 52 2 1 179 11 11 188 0 3 8 1 0 119 chain 46416 chr4 191154276 + 140636584 140637134 MER41A 554 - 0 554 61668 145 0 4 405 chain 22178 chr4 191154276 + 140644488 140644751 AluSp 311 - 36 297 119447 143 2 0 118 chain 24608 chr4 191154276 + 140672418 140672772 Tigger4b 360 - 0 360 106954 42 0 7 11 5 4 84 1 0 51 1 2 117 0 7 9 7 0 26 chain 26310 chr4 191154276 + 140693113 140693421 AluY 311 + 2 309 98785 107 1 0 23 0 1 145 1 0 31 chain 9417 chr4 191154276 + 140693965 140694079 AluSg4 309 + 14 131 163476 109 0 3 5 chain 5877 chr4 191154276 + 140831340 140831438 MER5A 189 + 29 128 186407 49 16 17 33 chain 36524 chr4 191154276 + 140865334 140865725 L1PA2 6032 - 2 393 74209 391 chain 46267 chr4 191154276 + 140865725 140866224 L1PA2 6032 + 5141 5640 61800 499 chain 24178 chr4 191154276 + 140870163 140870468 AluSc 308 - 4 308 109328 178 2 0 7 2 3 116 chain 41369 chr4 191154276 + 140885214 140885703 L1PA8A 6298 + 5794 6291 67445 82 0 8 216 1 0 85 0 1 105 chain 49089 chr4 191154276 + 140911358 140911916 L1P1 4361 + 3786 4341 59678 365 1 0 154 1 0 23 2 1 12 chain 29036 chr4 191154276 + 140932491 140932797 AluYb8 318 - 12 318 88826 306 chain 21075 chr4 191154276 + 140963521 140963765 AluSc8 310 + 15 262 123641 117 0 3 127 chain 14774 chr4 191154276 + 140995756 140996039 Tigger4 2445 + 2144 2408 142017 97 0 2 27 4 3 11 2 1 25 15 10 40 6 2 13 2 0 4 1 0 15 5 0 3 2 0 11 chain 27231 chr4 191154276 + 141058142 141058441 AluYk4 311 - 12 311 95496 299 chain 3534 chr4 191154276 + 141065328 141065371 MER20 218 - 136 179 214808 43 chain 36523 chr4 191154276 + 141082072 141082531 L1PA8 5853 - 0 461 74211 50 0 8 35 1 0 17 8 7 46 1 0 10 1 0 68 4 2 48 1 0 46 0 1 123 chain 23717 chr4 191154276 + 141090567 141090871 AluSp 311 - 2 300 111952 167 16 10 121 chain 7375 chr4 191154276 + 141103842 141103978 Tigger3b 1229 + 713 849 174943 57 0 8 8 32 24 39 chain 81213 chr4 191154276 + 141128314 141129577 L1MA3 4352 - 0 2140 43079 22 18 13 26 14 12 20 2 0 29 7 3 108 53 26 41 1 0 116 0 1 35 0 1 182 22 27 92 12 10 212 0 1 36 12 925 100 5 4 98 chain 40311 chr4 191154276 + 141133802 141134374 MER4A 717 + 0 705 68866 29 0 16 75 1 2 49 1 84 8 4 0 13 1 0 11 3 0 80 0 40 54 1 2 242 chain 268143 chr4 191154276 + 141135428 141138686 HERVH-int 3825 + 179 3825 15283 197 0 4 155 12 7 28 1 0 9 2 1 24 1 93 81 2 1 291 6 74 85 20 10 446 4 31 585 0 1 768 9 11 39 37 247 231 0 2 225 chain 28047 chr4 191154276 + 141139947 141140347 LTR7 482 + 0 482 92834 69 8 46 109 0 1 38 1 32 21 0 10 93 12 14 49 chain 27468 chr4 191154276 + 141141968 141142260 AluYa5 310 - 7 299 94750 292 chain 18187 chr4 191154276 + 141143226 141143502 Tigger3 1187 - 46 331 132366 52 14 12 11 0 8 45 0 14 21 1 0 15 10 0 107 chain 27340 chr4 191154276 + 141145862 141146149 AluYa5 310 + 14 301 95145 287 chain 5035 chr4 191154276 + 141146154 141146218 Tigger2a 444 - 237 301 194784 64 chain 26421 chr4 191154276 + 141150825 141151145 L1PA8A 6298 - 7 327 98333 102 1 0 4 4 5 209 chain 26411 chr4 191154276 + 141216817 141217101 AluYc 301 + 4 288 98369 284 chain 8658 chr4 191154276 + 141238370 141238769 LTR2 463 + 2 402 74408 365 0 1 34 chain 35637 chr4 191154276 + 141238858 141239245 L1PA2 6032 - 7 394 75361 387 chain 68188 chr4 191154276 + 141239246 141239985 L1PA2 6032 + 4881 5620 49163 739 chain 1324 chr4 191154276 + 141239985 141240046 LTR2 463 + 402 463 74408 61 chain 41011 chr4 191154276 + 141241139 141241643 MER41A 554 + 0 517 67886 31 0 8 53 0 1 125 1 0 147 0 4 85 0 1 62 chain 102869 chr4 191154276 + 141250085 141251559 L1PB1 5432 + 3947 5418 36031 44 0 1 559 10 11 66 3 0 216 0 1 19 4 0 239 1 2 11 10 7 18 0 3 12 18 12 52 2 1 16 1 0 18 25 26 20 1 15 10 3 1 5 1 0 14 2 0 24 1 0 34 1 0 14 chain 254919 chr4 191154276 + 141258727 141261620 L1PA4 6152 + 3260 6143 15986 225 5 8 1165 2 1 5 0 1 1152 0 1 263 14 0 62 chain 10310 chr4 191154276 + 141276146 141276313 MLT2A2 560 + 19 193 159090 99 3 4 20 8 9 19 3 8 15 chain 29004 chr4 191154276 + 141326327 141326636 AluYa5 310 - 0 309 88966 309 chain 550887 chr4 191154276 + 141334496 141340517 L1PA2 6032 + 0 6029 1330 257 1 0 453 0 7 2483 0 2 2664 5 0 7 4 9 147 chain 21345 chr4 191154276 + 141354566 141354822 AluY 311 + 38 292 122704 95 2 0 159 chain 4808 chr4 191154276 + 141370121 141370178 MER53 195 + 138 195 197258 57 chain 3486 chr4 191154276 + 141385754 141385908 MER63A 208 - 0 157 215584 31 99 102 24 chain 5760 chr4 191154276 + 141399902 141400044 MER58B 340 - 0 133 187555 20 57 48 65 chain 97678 chr4 191154276 + 141405621 141406716 L1PA3long 6157 + 5061 6157 37377 5 0 1 433 0 1 639 1 0 17 chain 17004 chr4 191154276 + 141407512 141407715 L1PA7 6471 - 4 220 135582 74 0 13 129 chain 9058 chr4 191154276 + 141420932 141421035 MER30 238 - 0 103 165265 103 chain 522638 chr4 191154276 + 141429354 141435420 L1PA5 6144 + 0 6141 4901 506 0 1 555 1 0 107 9 0 784 11 12 838 2 0 149 0 1 223 2 0 333 1 0 1785 1 0 246 0 68 209 0 20 304 chain 56629 chr4 191154276 + 141439278 141439929 L1P1 4361 + 3691 4341 54756 301 0 2 157 1 0 154 1 0 23 2 1 12 chain 39982 chr4 191154276 + 141441361 141441794 L1PA4 6152 - 1396 1829 68807 433 chain 120714 chr4 191154276 + 141441794 141443172 L1PA4 6152 + 4754 6143 30787 228 5 6 316 0 4 210 2 1 466 5 12 146 chain 63135 chr4 191154276 + 141466933 141467644 L1PA5 6144 + 5427 6138 51387 711 chain 5272 chr4 191154276 + 141488075 141488138 MIR 256 + 31 94 192295 63 chain 20501 chr4 191154276 + 141503633 141503879 L1PA7 6471 + 6209 6457 125627 67 0 1 21 1 2 157 chain 41527 chr4 191154276 + 141511094 141511637 HSMAR1 1287 + 8 864 67248 57 0 1 171 0 1 45 0 6 251 1 306 18 chain 48127 chr4 191154276 + 141517078 141517744 L1PB2 3958 - 135 811 60384 47 3 2 21 2 0 39 0 25 10 1 0 62 1 0 68 5 4 92 4 0 14 2 0 76 1 0 54 2 0 162 chain 39019 chr4 191154276 + 141522961 141523488 LTR10G 522 - 0 522 70719 10 1 0 62 0 2 95 13 14 248 7 0 91 chain 38868 chr4 191154276 + 141575199 141575702 LTR10D 510 - 0 510 70918 132 0 1 22 2 1 52 0 5 33 0 2 46 1 0 105 8 9 17 0 1 10 1 0 74 chain 28612 chr4 191154276 + 141577451 141577872 MER83 447 + 0 400 90685 54 32 11 271 0 8 7 10 2 47 chain 25881 chr4 191154276 + 141587499 141587791 AluYk4 311 - 22 311 100523 171 3 0 118 chain 3603 chr4 191154276 + 141587842 141587893 L1MB8 1703 + 1609 1658 213593 17 2 0 32 chain 15052 chr4 191154276 + 141630805 141631113 MER1B 344 - 0 307 141166 19 0 1 43 23 15 8 0 1 4 1 0 95 72 78 43 chain 22861 chr4 191154276 + 141633987 141634250 PABL_A 660 - 0 265 116283 150 0 2 113 chain 16682 chr4 191154276 + 141636308 141636511 MER4D1 891 - 675 877 136460 190 1 0 12 chain 4735 chr4 191154276 + 141703516 141703693 FAM 185 + 17 170 198102 33 58 55 32 41 20 13 chain 534316 chr4 191154276 + 141703831 141710001 L1PA5 6144 - 0 6141 3675 9 2 0 834 0 4 604 0 1 341 0 4 217 0 1 513 0 1 128 1 5 1853 45 1 934 0 1 223 0 1 466 chain 513101 chr4 191154276 + 141741706 141747641 L1PA5 6144 - 179 6141 5875 556 0 1 1057 0 4 742 0 1 434 0 10 428 0 5 425 0 1 336 12 13 196 0 16 217 0 1 460 1 0 140 20 7 186 0 1 725 chain 30941 chr4 191154276 + 141753402 141753833 MER57A1 433 + 0 433 82614 241 2 3 24 16 18 133 1 0 14 chain 35768 chr4 191154276 + 141758417 141758874 LTR71A 459 - 0 459 75178 14 9 7 232 0 5 68 1 0 133 chain 8825 chr4 191154276 + 141762277 141762388 L1PA8 5853 + 5742 5852 166523 18 2 1 91 chain 23202 chr4 191154276 + 141807098 141807370 AluY 311 + 36 308 114673 272 chain 5821 chr4 191154276 + 141813201 141813274 MER2 342 - 131 204 186926 73 chain 78477 chr4 191154276 + 141817024 141817854 L1HS 6032 + 5202 6032 44282 830 chain 484738 chr4 191154276 + 141836815 141842329 L1PA3long 6157 + 600 6142 7568 107 0 7 220 3 4 261 5 6 4 1 0 235 0 3 759 0 3 481 1 0 607 0 8 127 1 0 1930 0 1 642 1 8 129 chain 261354 chr4 191154276 + 141842357 141845281 L1PA4 6152 + 3223 6152 15628 2918 0 5 6 chain 5367 chr4 191154276 + 141849110 141849174 MSTA 426 + 362 426 191339 64 chain 53716 chr4 191154276 + 141877784 141878366 L1PA3long 6157 + 4721 5303 56534 582 chain 74932 chr4 191154276 + 141878366 141879200 L1PA3long 6157 + 5308 6150 46046 315 1 2 387 0 7 131 chain 14133 chr4 191154276 + 141909651 141909805 L1PA5 6144 - 7 161 144093 154 chain 30300 chr4 191154276 + 141909806 141910148 L1PA5 6144 + 5633 5975 83911 342 chain 28130 chr4 191154276 + 141926940 141927238 AluYa5 310 + 0 297 92539 132 1 0 165 chain 11176 chr4 191154276 + 141950870 141951036 L1MB2 1706 + 775 941 155533 11 1 0 104 10 11 40 chain 116726 chr4 191154276 + 141971469 141973000 THE1B-int 1605 - 0 1571 32217 157 5 9 362 10 7 244 0 1 95 3 0 18 0 15 7 2 1 4 0 1 227 0 25 11 5 6 381 chain 37813 chr4 191154276 + 141981821 141982302 L1PA7 6471 + 5987 6470 72393 149 1 2 61 7 8 263 chain 155559 chr4 191154276 + 141989542 141991227 L1PA2 6032 - 1332 3018 23915 1498 0 2 119 1 0 67 chain 120779 chr4 191154276 + 141991230 141992546 L1PA2 6032 + 4713 6029 30766 1316 chain 25330 chr4 191154276 + 142003734 142004005 AluYa5 310 - 3 274 103072 271 chain 88298 chr4 191154276 + 142033321 142034386 L1PA7 6471 - 3944 5013 40103 162 0 1 140 1 0 31 0 1 67 0 1 61 5 6 579 0 1 19 chain 319784 chr4 191154276 + 142034386 142038306 L1PA7 6471 + 2524 6466 12607 90 0 4 13 9 1 586 0 10 47 0 1 136 0 1 90 5 3 99 0 4 6 3 6 231 12 0 21 1 13 73 0 8 40 0 2 196 0 1 267 0 1 383 0 4 87 4 1 672 1 0 54 0 3 459 2 1 183 8 2 33 0 1 109 chain 8668 chr4 191154276 + 142044461 142044705 MER84 505 + 0 245 77573 223 0 1 21 chain 39141 chr4 191154276 + 142044707 142045160 L1PA5 6144 - 0 453 70553 453 chain 8917 chr4 191154276 + 142045168 142045419 MER84 505 + 253 497 77573 131 15 6 23 0 1 37 16 17 29 chain 3980 chr4 191154276 + 142055096 142055139 MER5A 189 - 120 163 207682 43 chain 37790 chr4 191154276 + 142070412 142071094 L1PB1 5432 - 10 661 72429 18 1 0 13 1 0 21 1 0 24 2 0 10 35 23 11 1 0 6 2 0 15 1 0 45 1 0 15 2 1 47 23 17 12 3 2 7 1 0 21 7 0 7 8 11 45 1 0 13 2 3 41 0 3 146 0 1 27 1 4 9 4 0 6 0 1 26 chain 516817 chr4 191154276 + 142083671 142090102 L1PA7 6471 + 9 6464 5508 173 5 6 222 0 2 28 1 2 26 0 1 424 4 0 8 1 5 482 0 3 226 0 1 111 6 5 99 5 6 268 4 3 206 0 6 58 0 1 86 0 1 170 1 2 863 1 0 456 1 9 140 1 0 631 1 0 244 1 2 22 24 26 588 2 0 254 0 1 588 chain 6934 chr4 191154276 + 142090110 142090194 MSTA-int 1630 + 1545 1630 177941 65 0 1 19 chain 43899 chr4 191154276 + 142103196 142103695 L1P1 4361 + 3845 4341 64336 306 1 0 154 1 0 23 2 1 12 chain 448805 chr4 191154276 + 142104723 142110787 L1PA8 5853 - 19 5745 8795 52 4 32 6 1 0 56 8 24 56 3 1 47 1 0 474 0 2 75 0 2 324 1 0 190 36 14 10 0 1 98 4 0 828 1 0 406 11 12 119 325 0 46 1 5 46 2 0 315 1 0 110 0 4 459 0 2 112 0 2 89 0 1 884 29 0 26 0 1 10 8 7 4 0 1 16 1 0 123 4 3 128 6 10 20 21 0 76 2 4 173 23 27 193 chain 7736 chr4 191154276 + 142135217 142135454 LTR12C 1709 + 1019 1184 172682 49 81 50 41 41 0 25 chain 46246 chr4 191154276 + 142148286 142148810 L1PA4 6152 - 0 517 61816 174 7 0 343 chain 23930 chr4 191154276 + 142166213 142166540 THE1A 353 + 0 329 110755 107 4 3 8 1 2 192 4 6 11 chain 168245 chr4 191154276 + 142190728 142192618 L1PA3long 6157 - 0 1867 22258 259 1 0 295 0 1 825 22 0 446 1 0 41 chain 114159 chr4 191154276 + 142192618 142193876 L1PA3long 6157 + 3016 4279 32982 237 0 4 430 0 1 591 chain 44533 chr4 191154276 + 142199818 142200398 LTR22 571 - 0 571 63544 12 1 0 113 19 11 147 9 7 20 0 4 5 2 0 60 0 1 113 1 0 78 chain 23288 chr4 191154276 + 142203831 142204134 AluY 311 + 0 308 114263 117 6 12 101 14 13 65 chain 6625 chr4 191154276 + 142218951 142219033 U13 108 - 27 108 180266 14 1 0 67 chain 7597 chr4 191154276 + 142220841 142220963 MER5A1 166 - 1 128 173567 23 3 18 43 1 0 33 9 0 10 chain 16718 chr4 191154276 + 142229601 142229792 L1PA5 6144 - 13 205 136346 28 0 1 163 chain 5002 chr4 191154276 + 142251772 142251849 MADE2 80 - 2 80 195118 43 4 5 30 chain 115055 chr4 191154276 + 142253368 142254913 LTR12C 1709 - 0 1709 32773 74 1 0 174 0 1 99 0 13 95 1 0 25 0 4 64 0 207 99 0 118 446 175 0 197 2 0 93 chain 47286 chr4 191154276 + 142281150 142281800 L1P3 4156 - 17 794 60976 24 0 135 133 2 1 15 9 0 25 2 0 152 0 1 70 5 8 81 1 0 6 0 1 125 chain 121213 chr4 191154276 + 142281828 142283289 L1PA8A 6298 + 4827 6290 30633 443 0 1 218 3 1 80 0 2 7 2 0 51 1 3 34 0 1 622 chain 529504 chr4 191154276 + 142283575 142290005 L1PA5 6144 - 12 6144 4242 326 0 1 799 0 1 202 3 0 145 0 1 502 0 8 465 1 2 263 0 1 740 0 1 621 0 15 210 314 0 659 9 0 475 1 0 695 chain 551814 chr4 191154276 + 142298935 142305079 L1PA3long 6157 + 9 6157 1210 517 4 0 1031 0 1 879 0 4 130 0 2 86 0 1 452 0 1 409 2 0 147 0 1 1655 0 1 339 1 0 492 chain 118147 chr4 191154276 + 142319639 142321053 L1PA5 6144 - 1 1413 31751 202 1 0 113 0 1 58 1 2 137 33 0 327 5 28 164 0 1 340 4 10 29 chain 90180 chr4 191154276 + 142321053 142322074 L1PA5 6144 + 3708 4729 39518 1021 chain 12758 chr4 191154276 + 142338164 142338364 MER30 238 - 0 212 149220 107 4 25 15 8 0 15 6 5 45 chain 177463 chr4 191154276 + 142340079 142343290 L1MA1 4479 - 372 4346 21211 29 8 7 90 58 33 8 0 21 60 1 0 26 5 4 68 7 6 16 1 0 4 3 2 14 5 4 115 7 6 74 3 0 127 7 4 56 35 33 37 4 0 12 1 0 74 4 0 19 2 0 64 1 0 4 0 3 102 2 0 27 1 0 88 1 0 8 1 0 16 0 1 41 1 0 9 2 0 24 2 0 103 1 0 66 1 0 146 5 40 68 0 15 143 5 9 11 13 10 33 2 1 10 0 1 30 9 10 22 145 948 26 0 9 23 0 4 39 6 17 82 14 17 6 3 0 56 46 0 8 17 58 56 0 4 193 4 5 39 5 8 14 1 0 8 49 0 132 13 4 20 2 0 24 0 1 24 74 57 8 1 0 15 1 0 15 chain 45974 chr4 191154276 + 142344708 142345253 L1PA7 6471 - 1 553 62062 133 0 5 96 0 1 27 0 1 289 chain 22185 chr4 191154276 + 142345253 142345549 MER75 514 + 205 503 119425 59 7 10 224 1 0 5 chain 16315 chr4 191154276 + 142354839 142355029 L1PA5 6144 - 12 202 137450 190 chain 78699 chr4 191154276 + 142383817 142385023 L1PA11 4918 - 356 1532 44189 8 1 0 15 13 9 10 8 3 9 4 0 20 1 0 14 2 0 67 3 0 12 3 2 58 8 4 100 37 23 119 2 0 17 0 3 16 0 2 6 1 0 294 11 12 67 0 14 54 8 0 218 chain 11791 chr4 191154276 + 142389318 142389506 MER44A 345 + 122 311 153091 46 8 16 48 21 14 65 chain 51936 chr4 191154276 + 142404812 142405908 LTR12_ 688 + 0 677 57659 26 1 0 155 25 1 161 289 0 108 104 0 29 1 0 197 chain 7071 chr4 191154276 + 142405593 142405679 LTR12_ 688 + 365 451 176939 86 chain 27165 chr4 191154276 + 142409115 142409412 AluYb9 318 - 14 318 95704 45 1 8 251 chain 93846 chr4 191154276 + 142411886 142413033 L1P3 4156 - 202 1356 38399 400 4 8 63 2 1 587 1 4 28 1 2 61 chain 471948 chr4 191154276 + 142425799 142431213 L1PA4 6152 - 759 6152 7972 1068 1 0 386 0 1 2702 7 6 396 17 0 258 1 0 21 2 0 555 chain 536141 chr4 191154276 + 142470442 142476597 L1PA4 6152 + 3 6151 3426 125 14 0 214 0 1 167 1 0 63 0 3 57 0 2 206 17 0 472 0 1 176 0 1 1678 1 2 75 0 7 1725 1 0 300 0 4 16 0 4 579 0 2 268 chain 2993 chr4 191154276 + 142484333 142484380 MADE1 96 + 1 46 225153 23 4 2 20 chain 110414 chr4 191154276 + 142503539 142504939 L1PBa 3878 + 859 2266 34093 65 0 1 59 2 3 192 0 1 281 0 1 48 0 1 4 6 0 99 2 0 152 0 10 490 chain 12730 chr4 191154276 + 142518688 142518862 L1PB 1623 - 170 343 149329 7 1 0 166 chain 12971 chr4 191154276 + 142520113 142520389 L1PB1 5432 + 5168 5422 148345 50 6 5 13 1 0 44 1 0 16 23 12 10 18 15 13 2 0 23 2 1 22 5 4 8 1 0 18 chain 9623 chr4 191154276 + 142526384 142526500 LTR12C 1709 - 624 781 162479 27 0 41 89 chain 15577 chr4 191154276 + 142527712 142528054 L1PB1 5432 - 5 316 139644 5 2 0 16 5 4 11 1 0 21 1 0 26 2 0 13 1 0 4 3 1 18 26 16 11 1 0 37 10 9 14 2 1 52 2 0 9 2 0 3 2 0 9 1 0 13 1 0 18 chain 8728 chr4 191154276 + 142536374 142536488 Tigger2 2703 - 573 688 167050 57 1 2 56 chain 68022 chr4 191154276 + 142536488 142537763 LTR12D 1347 + 0 1347 49238 202 73 86 19 97 26 48 1 0 155 15 99 17 0 59 107 43 39 23 28 0 7 21 50 63 5 1 21 5 1 25 1 0 33 2 1 195 11 13 33 1 0 24 chain 44475 chr4 191154276 + 142562504 142563006 L1PA5 6144 + 5634 6144 63607 42 0 10 446 3 1 11 chain 18535 chr4 191154276 + 142603867 142604115 AluY 311 + 40 293 131408 93 1 0 41 12 18 101 chain 136817 chr4 191154276 + 142609993 142611575 LTR12C 1709 - 0 1709 26678 481 0 4 112 1 0 38 0 2 155 0 4 59 0 118 736 chain 12717 chr4 191154276 + 142616453 142616911 L1MA6 2487 - 83 477 149389 6 1 0 22 4 1 35 177 115 127 68 70 18 chain 239978 chr4 191154276 + 142617865 142621457 L1PB2 3958 - 440 3892 16780 66 4 0 13 2 0 65 5 0 13 2 1 41 0 1 11 2 0 167 0 2 208 11 10 355 0 1 69 55 228 137 2 0 5 0 2 433 0 4 96 3 0 7 2 1 244 0 5 161 0 2 5 2 0 45 0 2 620 0 1 86 4 8 113 1 0 37 0 8 14 2 0 3 1 0 49 1 0 6 2 0 25 310 5 35 10 5 19 5 0 18 chain 103883 chr4 191154276 + 142672436 142673682 L1PA6 6164 - 2 1264 35751 168 3 4 163 0 1 133 0 1 282 2 6 11 1 3 66 0 7 417 chain 2855 chr4 191154276 + 142674450 142674484 MER5A1 166 - 43 77 227794 34 chain 58073 chr4 191154276 + 142700675 142701479 THE1C-int 1605 + 776 1597 53939 222 14 15 76 3 14 64 4 6 6 0 7 309 26 22 26 0 1 4 1 0 49 chain 51651 chr4 191154276 + 142703872 142704560 THE1C-int 1605 - 907 1605 57865 246 0 7 83 7 8 317 17 19 18 chain 15239 chr4 191154276 + 142726320 142726755 Tigger3b 1229 + 268 538 140668 27 31 38 27 182 13 99 4 1 65 chain 451982 chr4 191154276 + 142736662 142742944 L1PA8A 6298 + 34 6291 8698 6 1 0 16 1 0 11 3 0 6 12 4 22 4 1 19 64 70 15 2 0 4 1 0 10 5 4 7 1 0 9 1 0 4 1 0 17 14 7 62 8 0 11 1 2 66 2 0 13 4 3 9 1 0 3 1 0 76 1 0 67 5 4 133 1 20 73 4 0 186 0 5 101 0 4 31 0 2 14 11 5 105 0 3 129 8 1 172 2 1 50 54 22 224 0 2 81 6 6 264 1 2 84 0 14 191 1 2 245 0 1 213 0 2 37 2 5 99 4 5 237 3 2 17 14 13 160 9 10 323 0 1 179 0 1 12 1 0 89 1 2 395 0 1 310 0 1 291 0 1 23 3 4 59 0 4 182 3 4 142 0 1 52 0 3 64 0 6 291 23 8 183 1 0 4 20 21 79 chain 71833 chr4 191154276 + 142744565 142745371 L1P1 4361 + 3423 4228 47544 727 1 0 78 chain 539212 chr4 191154276 + 142754775 142760928 L1PA4 6152 + 1 6141 2944 480 0 1 580 0 2 1633 22 9 477 1 0 26 2 0 686 0 1 1593 1 0 652 chain 5111 chr4 191154276 + 142777471 142777533 MLT1A0 366 + 293 355 193969 62 chain 555510 chr4 191154276 + 142798499 142804529 L1PA2 6032 - 1 6031 772 3263 0 1 468 1 0 2298 chain 27128 chr4 191154276 + 142814005 142814451 MER4A1 472 - 23 472 95836 42 18 15 160 51 52 41 1 0 33 4 0 58 0 8 7 1 0 7 1 2 7 0 2 15 chain 29395 chr4 191154276 + 142859043 142859490 MER9a3 513 - 21 472 87099 57 0 1 48 6 8 61 0 4 6 8 4 45 1 0 66 19 20 61 3 4 66 chain 173635 chr4 191154276 + 142859509 142861595 HERVK9-int 4720 - 2 4386 21631 8 0 1 4 1 0 93 0 4 1231 0 2294 749 chain 32187 chr4 191154276 + 142862304 142862742 MER9a3 513 - 41 506 80548 37 0 1 178 1 0 63 13 14 68 0 1 63 4 29 11 chain 478703 chr4 191154276 + 142886862 142893000 L1PA6 6164 + 0 6159 7775 316 24 23 111 19 0 119 1 0 139 0 9 70 0 17 350 0 1 94 5 7 165 0 1 415 0 1 494 0 2 49 11 12 528 0 1 6 0 2 257 0 1 306 0 1 122 0 1 235 0 1 115 0 1 6 19 20 64 0 1 586 4 5 19 2 3 522 11 1 38 7 6 69 1 5 377 0 1 327 0 1 70 2 0 5 0 3 58 chain 23806 chr4 191154276 + 142907806 142908063 L1PA3long 6157 - 5 262 111445 257 chain 441637 chr4 191154276 + 142908265 142913860 L1PA7 6471 - 13 5705 9009 54 2 0 9 0 2 103 0 2 47 0 5 106 1 0 430 0 2 78 1 4 10 1 5 123 0 5 387 0 1 280 0 2 16 4 5 194 0 48 59 0 6 82 2 3 76 0 3 149 0 1 554 0 1 53 0 4 52 12 7 4 0 1 455 5 7 148 1 4 21 5 8 201 11 0 12 0 4 12 6 10 568 1 0 102 1 0 156 11 15 199 0 1 166 0 3 186 0 2 439 chain 77398 chr4 191154276 + 142918027 142919075 L1PA7 6471 - 7 1048 44781 5 3 0 34 16 12 89 43 4 9 0 35 573 2 0 86 0 3 8 0 4 9 2 1 169 chain 5075 chr4 191154276 + 142926369 142926461 L1PA13 3608 - 104 188 194355 13 6 3 22 1 0 18 2 0 5 2 0 23 chain 507327 chr4 191154276 + 142987716 142993641 L1PA5 6144 + 219 6144 6381 14 0 1 935 9 0 2007 1 0 109 1 0 42 0 1 289 3 0 8 0 1 814 5 6 326 0 1 591 1 2 17 1 0 427 0 1 229 0 8 96 chain 8338 chr4 191154276 + 142997814 142997904 L1PA4 6152 + 6061 6151 169185 90 chain 173537 chr4 191154276 + 143036006 143038010 L1PA5 6144 + 1171 3176 21646 1792 0 1 212 chain 251962 chr4 191154276 + 143038029 143040946 L1PA5 6144 + 3195 6131 16129 307 0 1 179 1 0 356 0 22 49 2 0 1156 0 1 28 2 0 837 chain 20686 chr4 191154276 + 143055704 143055976 AluSp 311 + 38 308 125012 94 15 13 163 chain 152093 chr4 191154276 + 143058041 143059699 L1PA3long 6157 + 4499 6157 24326 1658 chain 10904 chr4 191154276 + 143076704 143076836 MER85 139 + 4 139 156575 37 1 4 94 chain 5280 chr4 191154276 + 143093001 143093059 UCON12 82 - 19 77 192211 58 chain 11454 chr4 191154276 + 143097308 143097438 L1PA5 6144 - 16 146 154486 130 chain 23663 chr4 191154276 + 143136794 143137074 AluY 311 + 30 311 112230 102 0 1 178 chain 117436 chr4 191154276 + 143165082 143166830 L1PA7 6471 - 17 2592 31983 323 1 0 33 316 0 290 0 3 177 0 6 20 1 0 109 0 1 14 0 5 175 1 0 65 0 1 29 0 1130 194 chain 52671 chr4 191154276 + 143168272 143168948 L1P3 4156 - 17 694 57203 24 11 8 176 0 1 164 10 12 150 0 1 141 chain 541952 chr4 191154276 + 143174497 143180516 L1PA3long 6157 + 2 6156 2514 150 0 1 621 1 130 1421 0 1 1763 0 1 419 0 3 1644 chain 26970 chr4 191154276 + 143198167 143198520 L1PB1 5432 - 640 985 96370 165 7 0 77 1 0 103 chain 30649 chr4 191154276 + 143198561 143199186 L1PB1 5432 + 4834 5408 83122 72 0 9 68 14 16 99 48 16 16 16 14 12 2 0 3 2 0 9 2 0 52 2 1 17 1 0 43 1 0 8 65 51 8 2 0 22 1 0 22 1 0 12 1 0 4 chain 10123 chr4 191154276 + 143215029 143215181 L1PB4 2604 + 2422 2572 159978 69 4 3 54 9 8 16 chain 23801 chr4 191154276 + 143253881 143254191 AluY 311 + 6 310 111469 118 22 16 170 chain 23764 chr4 191154276 + 143287126 143287465 LTR7B 505 + 28 441 111684 80 0 10 57 0 93 12 29 0 85 1 0 23 0 1 52 chain 28514 chr4 191154276 + 143307554 143307986 MER57A1 433 + 0 433 91125 260 67 68 105 chain 173707 chr4 191154276 + 143311827 143314731 MER57-int 2662 + 109 2655 21624 51 0 4 149 2 0 115 0 1 25 8 1 47 5 1 175 0 1 24 384 32 111 0 1 29 0 1 69 1 0 263 0 1 66 1 0 93 0 2 33 1 0 127 0 5 176 0 1 163 86 88 25 6 11 52 0 2 143 17 18 77 0 2 39 11 10 81 18 12 68 36 21 18 2 0 6 1 0 4 36 45 27 3 0 30 chain 25836 chr4 191154276 + 143314740 143315146 MER57A1 433 + 0 433 100725 36 4 7 33 0 15 14 0 5 161 11 12 16 29 31 38 1 2 63 chain 69792 chr4 191154276 + 143336539 143337308 L1PA4 6152 + 5372 6143 48476 67 0 2 702 chain 11684 chr4 191154276 + 143355945 143356148 MER30 238 - 0 237 153544 45 3 0 35 0 5 10 7 5 10 5 0 7 2 24 59 1 0 5 0 18 14 chain 43883 chr4 191154276 + 143358831 143359433 L1PA10 4194 + 2737 4161 64351 320 2 828 197 1 0 34 15 12 14 0 1 7 1 0 11 chain 7020 chr4 191154276 + 143365385 143365468 L1PA8 5853 - 866 949 177322 83 chain 59995 chr4 191154276 + 143365468 143366327 L1PA8 5853 + 5004 5847 52829 5 2 0 17 7 5 53 0 2 126 22 21 281 9 1 47 1 0 20 0 2 24 2 0 71 1 0 9 13 12 39 3 2 19 4 3 84 chain 24775 chr4 191154276 + 143373087 143373390 L1PA6 6164 - 28 331 106028 303 chain 4827 chr4 191154276 + 143392981 143393088 ORSL 269 - 27 112 197042 38 39 17 30 chain 25638 chr4 191154276 + 143413084 143413420 THE1C 375 + 0 347 101547 128 2 12 42 1 2 163 chain 6226 chr4 191154276 + 143421769 143421847 L1MB1 2102 - 251 330 183349 33 0 1 45 chain 31605 chr4 191154276 + 143430387 143430762 L1PA7 6471 - 1 381 81476 12 0 4 100 0 1 263 chain 23354 chr4 191154276 + 143434566 143434848 AluSq10 312 - 18 301 113908 254 0 1 28 chain 81666 chr4 191154276 + 143444817 143445710 L1PA3long 6157 - 5 899 42904 553 0 1 340 chain 129536 chr4 191154276 + 143445710 143447128 L1PA3long 6157 + 3814 5232 28197 1418 chain 9094 chr4 191154276 + 143507030 143507138 L1PA6 6164 - 15 123 165097 108 chain 13488 chr4 191154276 + 143508721 143508935 L1MA3 4352 - 24 233 146395 14 1 0 26 1 0 5 2 1 22 6 4 77 1 0 10 0 1 49 chain 46529 chr4 191154276 + 143523239 143524011 L1PA11 4918 + 3276 4629 61572 60 1 0 195 0 4 147 0 614 32 3 0 19 8 7 39 2 1 13 2 0 65 2 0 16 1 0 20 4 0 9 30 25 12 1 0 13 2 0 11 47 33 18 chain 85008 chr4 191154276 + 143544723 143545657 L1PA3long 6157 - 0 935 41508 621 0 1 313 chain 151524 chr4 191154276 + 143545657 143547338 L1PA3long 6157 + 3518 5198 24393 112 0 1 56 2 0 1511 chain 77853 chr4 191154276 + 143548320 143549192 L1P1 4361 - 132 1004 44589 79 1 0 533 0 1 259 chain 48510 chr4 191154276 + 143549192 143549724 L1PA2 6032 + 5497 6032 60095 417 1 0 101 0 4 13 chain 14012 chr4 191154276 + 143553392 143553578 L1MA4 2864 + 2499 2680 144540 23 2 0 153 3 0 5 chain 170463 chr4 191154276 + 143562433 143564376 L1PA5 6144 - 9 1955 21995 391 4 6 315 0 1 1233 chain 503179 chr4 191154276 + 143569352 143575531 L1PA6 6164 + 0 6162 6660 194 1 2 4 1 0 281 6 1 85 37 16 722 0 8 135 1 0 862 2 3 11 5 1 554 0 1 149 1 0 38 1 2 115 5 6 340 1 0 175 0 2 469 2 3 182 0 4 6 0 4 327 11 0 213 0 1 396 0 4 649 2 1 196 chain 259731 chr4 191154276 + 143578269 143582133 MER61-int 3695 + 21 3695 15716 9 4 0 16 1 0 226 1 0 18 0 2 67 0 4 47 1 2 125 7 6 92 1 103 62 0 2 46 22 21 79 0 1 72 4 17 85 0 3 35 0 4 28 6 7 607 9 10 79 0 4 223 1 4 20 311 0 38 6 9 226 0 1 156 0 1 35 21 11 141 1 0 98 1 0 35 1 0 6 12 1 23 0 5 88 1 0 92 2 3 29 0 1 4 5 3 8 2 0 191 4 5 224 0 4 110 chain 6337 chr4 191154276 + 143593628 143593843 L1ME1 1623 - 512 721 182492 21 1 0 7 3 0 46 49 44 14 10 13 17 25 25 22 chain 282645 chr4 191154276 + 143595629 143599150 L1PA7 6471 + 2908 6467 14494 188 0 4 141 0 14 188 0 1 134 0 7 15 7 8 357 0 3 28 4 3 258 1 2 350 1 0 53 6 10 10 0 1 177 4 7 487 1 0 267 1 0 335 6 7 39 6 0 5 0 6 279 24 25 58 0 1 91 chain 25914 chr4 191154276 + 143623595 143623910 AluSp 311 + 0 309 100356 98 1 0 26 5 0 185 chain 4649 chr4 191154276 + 143633295 143633346 MLT1A0 366 + 227 278 199076 51 chain 34537 chr4 191154276 + 143638639 143639054 L1PA6 6164 + 5751 6162 76851 405 4 0 6 chain 44437 chr4 191154276 + 143657610 143658103 L1PA4 6152 - 1660 2153 63651 493 chain 149345 chr4 191154276 + 143658103 143659763 L1PA4 6152 + 4478 6143 24708 826 0 4 807 0 1 27 chain 26890 chr4 191154276 + 143667363 143667693 L1PA7 6471 + 4646 4977 96665 29 0 1 301 chain 120798 chr4 191154276 + 143667695 143669183 L1PA7 6471 + 4980 6465 30759 640 2 1 77 0 2 482 0 1 145 1 0 45 1 0 86 3 0 6 chain 4108 chr4 191154276 + 143700976 143701029 MADE1 96 - 2 96 205799 36 0 41 17 chain 70255 chr4 191154276 + 143703137 143703894 L1PA3long 6157 - 0 757 48287 757 chain 62199 chr4 191154276 + 143703894 143704571 L1PA3long 6157 + 4722 5400 51804 134 0 1 543 chain 15701 chr4 191154276 + 143709662 143710011 L1PB1 5432 - 28 346 139263 13 11 10 11 1 0 24 2 0 14 8 5 17 14 6 9 4 0 11 8 7 40 1 0 16 2 1 53 2 0 8 5 1 12 1 0 32 13 11 17 chain 59853 chr4 191154276 + 143710020 143710886 L1PB 1623 + 673 1524 52899 33 22 22 25 1 0 93 0 1 186 0 1 191 0 1 78 0 5 29 27 16 96 6 4 30 1 0 4 3 0 14 4 0 14 1 0 8 chain 7694 chr4 191154276 + 143780757 143780865 MER58C 217 + 116 216 172969 10 8 0 90 chain 106013 chr4 191154276 + 143782904 143784133 L1PA5 6144 + 4914 6144 35255 481 0 1 748 chain 393442 chr4 191154276 + 143788576 143793672 L1PA7 6471 + 3 6454 10340 47 0 1 94 15 0 6 32 47 205 2 0 274 45 49 271 0 4 130 0 1 152 1 2 209 0 1 66 0 1 463 0 1 106 0 1 131 2 0 141 21 0 225 42 13 125 2 0 13 1 1405 14 0 1 139 0 1 329 0 4 137 0 1 251 5 0 112 11 0 441 9 8 73 0 2 136 1 0 483 1 2 133 chain 133917 chr4 191154276 + 143796495 143798495 L1PA10 4194 + 220 2365 27233 12 12 9 9 1 0 21 2 0 15 1 0 8 112 77 9 1 0 14 7 0 9 3 0 79 3 2 40 0 3 188 1 0 104 2 1 40 1 5 12 17 14 30 10 6 242 5 5 454 0 2 16 0 2 174 41 237 49 0 1 256 chain 120068 chr4 191154276 + 143818473 143819899 LTR12C 1709 + 0 1709 31036 87 0 3 259 0 3 225 5 4 80 0 278 173 9 6 106 0 4 85 1 0 396 chain 41121 chr4 191154276 + 143835787 143836246 L1PA2 6032 - 6 459 67748 7 6 0 446 chain 116376 chr4 191154276 + 143836246 143837519 L1PA2 6032 + 4299 5572 32320 1273 chain 39446 chr4 191154276 + 143851503 143851939 L1P1 4361 - 59 494 70098 152 1 0 283 chain 165867 chr4 191154276 + 143851940 143853776 L1PA3long 6157 + 4320 6157 22531 432 0 1 1404 chain 5560 chr4 191154276 + 143872518 143872676 MLT1E1A 663 + 477 663 189485 4 1 0 61 74 103 18 chain 6117 chr4 191154276 + 143875890 143876017 LTR12C 1709 + 937 1068 184300 40 0 41 28 37 0 22 chain 26268 chr4 191154276 + 143886340 143886682 THE1A 353 - 0 353 98941 119 0 1 102 2 13 7 1 0 111 chain 126439 chr4 191154276 + 143886682 143888236 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47 chain 47590 chr4 191154276 + 143984026 143984643 L1PA8 5853 + 5229 5839 60774 333 1 0 37 11 9 74 1 0 11 2 0 6 1 2 42 1 0 17 1 0 79 chain 296943 chr4 191154276 + 143988225 143992241 L1PA10 4194 - 44 4019 13592 33 4 1 7 0 3 400 0 1 4 1 0 44 0 4 37 1 2 150 0 1 137 0 1 367 1 0 99 6 7 172 0 4 36 17 18 63 0 7 45 4 0 233 0 1 510 7 6 91 4 10 296 0 1 503 0 1 353 1 0 18 3 1 11 2 0 62 26 15 13 5 0 8 1 0 11 1 0 9 1 0 12 3 0 4 0 1 24 1 0 7 46 20 15 2 0 5 1 4 12 1 0 9 1 0 9 2 0 25 13 8 9 1 0 5 2 0 10 chain 18817 chr4 191154276 + 144009612 144009852 MER75B 242 + 0 242 130629 28 0 2 212 chain 30168 chr4 191154276 + 144011611 144012045 LTR2 463 + 0 435 84279 210 23 23 135 0 1 4 25 26 8 1 0 28 chain 154757 chr4 191154276 + 144014963 144017903 MER4-int 2692 + 74 2692 24010 16 29 31 59 0 1 358 0 9 48 1 2 111 7 8 31 0 1 5 8 12 176 1 0 89 62 1 73 1 0 48 2 1 228 0 16 32 5 4 15 5 0 16 2 3 10 0 1 93 0 1 29 0 3 29 0 3 115 1 3 136 2 0 54 0 1 23 726 417 76 1 0 17 0 4 10 1 0 16 1 0 23 0 1 34 0 10 115 chain 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144230716 HY3 101 + 2 99 172395 40 0 1 56 chain 58816 chr4 191154276 + 144249000 144250075 MER4E 760 - 7 760 53511 88 0 1 130 1 0 5 17 0 168 319 6 40 1 9 47 0 1 77 1 0 17 1 0 146 0 1 17 chain 116657 chr4 191154276 + 144291724 144293043 L1PA5 6144 - 21 1340 32242 1319 chain 10710 chr4 191154276 + 144337947 144338076 MER85 139 + 0 139 157369 90 0 10 39 chain 18843 chr4 191154276 + 144344730 144344942 AluY 311 + 83 296 130535 148 0 1 64 chain 19824 chr4 191154276 + 144349925 144350160 L1PA5 6144 + 5908 6144 127735 139 0 1 96 chain 6678 chr4 191154276 + 144350163 144350250 MER61-int 3695 - 1559 1647 179846 60 1 2 26 chain 373047 chr4 191154276 + 144366958 144371063 L1PA3long 6157 - 10 4122 10994 1790 0 8 476 2 0 184 1 0 396 0 1 108 0 1 1148 chain 242387 chr4 191154276 + 144411549 144415140 L1MA1 4479 + 568 4151 16651 19 5 7 416 0 1 105 5 4 22 2 3 64 1 0 96 0 4 55 2 0 58 1 0 236 1 10 129 6 5 23 1 0 203 1 4 77 0 1 4 6 4 22 1 0 20 0 1 147 0 1 258 1 2 33 1 0 66 1 0 15 0 1 82 7 5 33 1 0 10 1 2 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191154276 + 144521318 144521618 L1PB1 5432 + 5144 5423 155397 12 2 0 3 2 0 9 2 0 29 1 0 23 3 1 15 1 0 22 7 17 5 1 0 16 24 12 16 34 29 20 1 0 19 2 1 11 1 0 19 chain 9268 chr4 191154276 + 144524794 144525060 LTR56 451 + 0 274 164226 13 2 0 52 1 0 6 122 133 70 chain 24999 chr4 191154276 + 144537657 144537956 AluY 311 + 0 293 104792 123 2 0 6 4 0 164 chain 10985 chr4 191154276 + 144567935 144568073 THE1C-int 1605 + 15 155 156252 77 0 2 61 chain 30436 chr4 191154276 + 144573296 144573614 AluYb9 318 - 0 318 83566 318 chain 12568 chr4 191154276 + 144579760 144579931 MER30 238 + 0 199 149978 100 5 33 66 chain 549157 chr4 191154276 + 144580267 144586392 L1PA3long 6157 - 15 6157 1560 40 0 4 99 1 2 160 0 11 792 1 0 871 5 6 211 5 0 869 0 1 174 0 1 198 0 5 1014 1 0 1684 chain 151924 chr4 191154276 + 144593610 144595330 L1PA5 6144 - 4368 6088 24347 1720 chain 383873 chr4 191154276 + 144595348 144599697 L1PA5 6144 + 1783 6137 10643 768 0 2 2460 0 1 4 1 0 273 1 5 589 1 0 252 chain 392349 chr4 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98 16 3 0 21 6 9 16 128 128 117 3 14 122 12 10 93 52 38 58 0 1 163 1 10 590 1 0 144 2 1 115 0 3 247 0 1 464 1 0 42 0 5 260 7 6 588 0 1 63 0 1 28 0 2 61 0 1 248 14 26 38 6 9 92 0 1 265 0 1 43 6 7 103 0 5 112 2 1 79 0 2 434 9 10 166 2 3 143 1 0 9 chain 12439 chr4 191154276 + 144687429 144687619 L1PA16 3655 + 3181 3368 150499 20 1 0 79 23 21 67 chain 44253 chr4 191154276 + 144698929 144699483 LTR14 556 + 0 556 63877 438 4 3 22 1 0 6 1 5 82 chain 115628 chr4 191154276 + 144706847 144708110 L1PA4 6152 - 6 1270 32578 851 0 1 412 chain 26890 chr4 191154276 + 144711041 144711367 L1PA7 6471 - 2 329 96666 155 1 2 170 chain 149537 chr4 191154276 + 144723001 144724712 L1PA5 6144 + 4411 6123 24684 902 0 1 809 chain 118342 chr4 191154276 + 144725280 144726596 L1PA3long 6157 + 4833 6149 31676 1316 chain 46255 chr4 191154276 + 144735444 144736072 LTR71B 605 - 0 605 61810 94 1 0 161 6 0 81 0 1 111 25 15 121 8 1 20 chain 3283 chr4 191154276 + 144772254 144772293 L1MA7 2200 + 1992 2031 219299 39 chain 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160 17 0 82 0 1 111 25 15 45 2 1 75 8 1 20 chain 28376 chr4 191154276 + 144887763 144888161 MSTC 436 - 12 436 91675 140 0 2 124 34 58 100 chain 5844 chr4 191154276 + 144893248 144893375 L1MA7 2200 + 1992 2103 186735 39 29 19 40 6 0 13 chain 12738 chr4 191154276 + 144895945 144896132 MER30 238 - 0 207 149300 35 4 7 66 6 23 76 chain 13419 chr4 191154276 + 144896205 144896393 MER47A 366 - 103 293 146636 45 11 13 132 chain 25892 chr4 191154276 + 144908916 144909261 MER41A 554 - 204 554 100477 129 5 9 119 6 7 86 chain 34876 chr4 191154276 + 144912235 144912686 THE1C-int 1605 - 5 458 76372 248 1 0 5 0 2 15 0 1 57 0 1 4 1 0 120 chain 19881 chr4 191154276 + 144917309 144917632 MER51E 476 + 0 288 127548 25 61 27 77 1 0 159 chain 71097 chr4 191154276 + 144933889 144935080 L1PA2 6032 + 4785 6029 47891 20 97 110 16 49 50 21 196 233 639 2 0 100 0 4 51 chain 113288 chr4 191154276 + 144947729 144948998 L1PA4 6152 - 1 1270 33284 1269 chain 25359 chr4 191154276 + 144951932 144952260 L1PA7 6471 - 1 329 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56 1 0 24 8 7 235 1 5 60 0 1 47 0 1 15 0 5 57 33 34 238 23 19 169 7 17 197 4 5 59 0 4 52 13 13 384 5 9 129 2 0 99 1 0 119 1 4 72 2 1 448 2 0 97 1 0 17 3 1 15 2 1 19 1 0 17 48 48 110 19 17 67 chain 9281 chr4 191154276 + 145856771 145856895 L1MA3 4352 - 4204 4327 164162 111 2 0 4 0 1 7 chain 23689 chr4 191154276 + 145864837 145865147 AluSc5 308 - 10 307 112093 7 9 0 164 4 0 126 chain 13804 chr4 191154276 + 145876518 145876725 MER61-int 3695 + 9 206 145257 15 14 0 22 2 0 19 4 5 124 0 5 7 chain 378484 chr4 191154276 + 145877762 145882460 L1PA7 6471 - 4 4707 10802 6 4 0 60 2 0 5 0 2 501 0 6 96 1 0 172 2 0 109 0 2 801 0 10 209 0 1 225 0 1 59 1 2 56 0 1 590 0 4 9 14 11 7 0 1 331 0 1 101 25 5 189 1 5 243 8 5 120 0 2 124 0 3 211 0 1 416 chain 5108 chr4 191154276 + 145882461 145882523 MER61-int 3695 + 2769 2831 193999 62 chain 118626 chr4 191154276 + 145885889 145887354 L1PA8 5853 + 4382 5853 31567 332 0 2 288 0 10 552 1 0 42 2 0 68 4 3 8 2 1 52 2 1 19 2 1 57 2 3 32 chain 38835 chr4 191154276 + 145900838 145901342 LTR10D 510 + 0 510 70971 64 11 15 149 0 5 4 5 0 12 1 2 129 0 1 129 chain 110848 chr4 191154276 + 145901345 145902949 L1PA11 4918 - 340 1885 33986 11 2 0 13 1 0 7 0 3 5 13 9 10 22 13 19 1 0 10 10 8 62 1 2 12 2 1 61 4 0 15 0 4 36 65 17 691 23 23 13 0 4 121 9 8 210 0 1 77 0 1 78 chain 10802 chr4 191154276 + 145904470 145904614 Tigger4a 237 + 0 237 156980 122 0 93 22 chain 61802 chr4 191154276 + 145907001 145907696 L1P1 4361 - 318 1014 51995 108 0 1 587 chain 98103 chr4 191154276 + 145907696 145908799 L1PA4 6152 + 5028 6143 37252 47 0 2 221 0 4 82 1 0 12 0 6 218 0 1 522 chain 9051 chr4 191154276 + 145912016 145912170 L1M3f 2199 + 301 447 165310 25 1 0 31 3 2 13 2 0 3 1 0 21 1 0 4 2 0 47 chain 5228 chr4 191154276 + 145912361 145912424 Tigger1 2417 + 869 932 192751 63 chain 6993 chr4 191154276 + 145912832 145912949 MER30 238 + 116 236 177521 45 14 20 11 4 1 43 chain 377372 chr4 191154276 + 145917740 145922338 L1PA6 6164 + 998 6157 10835 724 0 1 228 1 8 374 1 2 487 36 0 362 0 1 4 0 1 124 2 3 405 0 581 155 17 1 644 7 8 103 9 0 23 0 5 75 0 7 71 1 3 309 0 4 265 5 15 166 chain 314999 chr4 191154276 + 145928235 145931985 L1PA5 6144 + 2423 6143 12807 268 7 8 104 42 4 229 0 1 127 2 0 6 7 0 760 2 0 411 0 4 100 1 4 288 1 12 1137 1 8 7 7 0 92 5 4 146 chain 188696 chr4 191154276 + 145937151 145939277 L1PA5 6144 + 4011 6141 20172 1283 0 2 442 4 6 397 chain 290668 chr4 191154276 + 145939298 145943761 L1PB1 5432 + 1354 5391 13980 49 15 0 140 349 41 7 19 0 581 0 1 81 6 7 20 0 2 202 7 10 51 1 6 290 15 15 152 1 2 188 1 2 81 0 2 15 0 1 431 15 0 107 78 0 124 4 5 25 8 7 26 1 2 158 10 11 176 1 0 157 0 6 83 1 3 8 2 1 177 1 8 49 0 4 146 0 2 87 28 16 19 1 0 9 1 0 10 5 1 11 2 0 51 2 1 16 1 0 44 1 0 15 1 0 4 46 35 11 2 0 15 1 9 21 chain 11099 chr4 191154276 + 145944028 145944164 L1PA5 6144 - 4 137 155811 5 3 0 128 chain 456375 chr4 191154276 + 145949680 145955291 HERVL-int 5654 + 2 5654 8528 102 0 1 4 1 0 94 0 2 175 9 8 258 2 3 126 16 21 217 4 5 22 1 0 690 7 11 32 0 1 131 0 2 103 9 0 399 0 4 202 0 1 603 0 1 88 0 7 187 0 4 91 0 1 351 1 0 15 0 2 404 0 2 112 6 18 264 10 14 445 2 0 128 0 6 5 3 0 70 0 1 66 5 1 76 3 4 72 chain 28988 chr4 191154276 + 145955291 145955863 MLT2A1 477 + 0 477 89049 140 1 2 26 1 5 22 1 0 162 164 67 11 1 0 23 1 0 19 chain 43096 chr4 191154276 + 145977191 145977738 MER41A 554 + 0 554 65294 15 1 0 390 0 4 59 8 13 67 1 0 6 chain 12286 chr4 191154276 + 146005632 146005803 MER30 238 - 0 202 151052 113 1 27 31 4 9 22 chain 17789 chr4 191154276 + 146047489 146047736 AluSg7 307 - 52 297 133449 100 14 14 23 4 2 106 chain 9045 chr4 191154276 + 146070690 146070801 HY1 111 - 0 111 165342 111 chain 23763 chr4 191154276 + 146079364 146079662 AluY 311 + 11 311 111687 45 1 2 68 0 1 184 chain 14268 chr4 191154276 + 146085729 146085932 Tigger4a 237 + 0 203 143659 144 1 0 26 0 1 6 8 0 10 0 8 8 chain 24838 chr4 191154276 + 146086634 146086927 AluSp 311 - 17 311 105682 214 0 1 79 chain 8178 chr4 191154276 + 146116264 146116420 MER44A 345 - 90 266 170084 18 6 0 29 7 35 57 17 15 22 chain 33841 chr4 191154276 + 146117489 146117987 LTR10F 562 - 8 562 77870 79 2 0 198 5 11 13 0 52 11 28 0 44 3 31 115 chain 34646 chr4 191154276 + 146120728 146121311 MER4A 717 - 30 687 76697 188 91 129 93 14 27 19 0 13 93 9 18 63 0 1 13 chain 478029 chr4 191154276 + 146144252 146149782 L1PA6 6164 - 3 5564 7800 100 0 17 645 1 0 1503 0 1 196 1 4 922 0 1 443 1 3 198 1 2 271 0 4 206 1 0 566 0 2 414 0 2 61 chain 425311 chr4 191154276 + 146158863 146165103 L1PA7 6471 - 7 6466 9411 111 314 0 221 4 5 408 307 0 19 0 2 52 7 8 21 0 3 174 2 0 279 2 1161 427 1 4 16 0 4 52 1 0 254 36 0 83 309 0 60 10 14 121 1 0 67 5 9 247 1 2 655 3 5 444 1 2 72 6 9 98 0 1 746 0 15 178 21 5 39 9 10 356 chain 24968 chr4 191154276 + 146173840 146174226 LTR7B 505 - 0 505 104969 25 2 0 26 14 13 72 17 58 54 18 86 56 0 10 8 0 3 94 chain 25033 chr4 191154276 + 146177725 146178134 LTR7B 505 - 10 505 104623 41 43 41 5 0 1 55 0 41 54 2 23 26 22 37 55 1 11 105 chain 81187 chr4 191154276 + 146178588 146179521 L1PA6 6164 - 2 934 43094 854 1 0 78 chain 17204 chr4 191154276 + 146183830 146184128 THE1B 368 + 8 356 135028 36 0 6 6 46 55 61 10 9 16 2 0 67 0 38 54 chain 11822 chr4 191154276 + 146204515 146204642 L1PA3long 6157 + 6030 6157 152941 127 chain 17045 chr4 191154276 + 146212598 146212959 THE1D 372 + 7 372 135479 95 139 144 94 1 0 32 chain 21995 chr4 191154276 + 146242588 146242942 THE1D 372 + 0 372 120255 62 1 0 8 0 14 76 59 64 148 chain 27074 chr4 191154276 + 146248638 146248988 THE1B 368 - 9 368 96023 66 1 0 93 4 0 28 1 0 113 0 15 44 chain 6330 chr4 191154276 + 146276561 146276639 MLT2B4 540 - 462 540 182543 78 chain 154169 chr4 191154276 + 146286206 146290523 L1PA4 6152 - 0 4322 4447 834 20 21 181 0 1 239 1 0 235 0 5 862 0 1 91 2 0 1852 chain 554819 chr4 191154276 + 146290540 146296521 L1PA2 6032 + 48 6032 846 638 0 3 5343 chain 65103 chr4 191154276 + 146299154 146300977 L1PA4 6152 - 4322 6152 4447 491 0 1 53 0 1 105 0 5 1174 chain 4511 chr4 191154276 + 146308527 146308621 MER20 218 - 91 195 200660 24 24 35 5 1 0 40 chain 196550 chr4 191154276 + 146320529 146322828 L1P2 5180 - 1553 3845 19463 283 0 7 952 0 1 55 19 2 400 0 1 325 0 1 265 chain 173309 chr4 191154276 + 146322835 146324933 L1PA6 6164 + 4045 6156 21674 318 5 9 284 2 1 146 10 11 341 0 1 182 0 1 549 0 1 22 0 6 85 1 9 12 11 3 130 chain 2718 chr4 191154276 + 146331530 146331571 MLT2C1 407 - 6 48 229931 11 1 2 29 chain 14220 chr4 191154276 + 146349150 146349345 MER107 203 - 0 200 143817 32 1 4 64 1 3 97 chain 5681 chr4 191154276 + 146353560 146353691 L1ME1 1623 - 1340 1469 188290 44 10 8 22 6 7 23 2 0 5 3 5 6 1 0 9 chain 11870 chr4 191154276 + 146376698 146376868 Tigger3b 1229 - 24 194 152743 98 16 16 56 chain 452205 chr4 191154276 + 146378708 146384011 L1PA5 6144 + 14 6144 8688 106 0 14 339 3 0 96 0 1 155 1 2 442 9 0 534 0 1 125 0 22 1345 1 0 175 0 1 354 1 13 438 0 3 384 0 789 326 10 5 179 6 7 274 chain 5591 chr4 191154276 + 146390402 146390530 MER63A 208 - 0 126 189167 37 50 48 41 chain 53650 chr4 191154276 + 146391850 146393180 L1PB1 5432 - 10 919 56583 29 1 0 20 1 0 27 2 0 14 1 0 5 3 1 17 27 13 15 1 0 45 1 0 10 11 10 47 3 1 9 22 17 4 1 0 24 433 53 122 0 1 99 0 1 31 1 2 97 2 3 42 6 0 33 17 10 107 chain 9518 chr4 191154276 + 146420783 146420958 Tigger4b 360 + 188 360 162989 83 12 11 10 17 16 12 2 1 39 chain 2966 chr4 191154276 + 146443111 146443169 Charlie1a 1436 - 1077 1145 225763 28 12 22 18 chain 28074 chr4 191154276 + 146448376 146448674 AluYa5 310 - 12 310 92747 298 chain 370428 chr4 191154276 + 146495530 146500000 L1P2 5180 + 30 4511 11079 120 53 51 46 3 2 25 1 0 4 0 1 11 0 1 224 1 0 48 1 0 224 1 0 6 1 0 124 0 8 30 1 0 169 0 1 195 0 1 1005 0 1 374 0 1 221 0 1 252 0 1 12 1 0 75 0 5 36 1 0 4 0 1 379 2 0 675 0 2 145 chain 135127 chr4 191154276 + 146500002 146501616 L1PA6 6164 + 4521 6153 26987 201 8 15 446 10 22 107 0 4 738 12 7 92 chain 513211 chr4 191154276 + 146512472 146518573 L1PA5 6144 - 0 6144 5863 13 3 0 213 0 1 17 0 2 604 1 0 838 0 3 771 0 1 401 0 1 109 8 6 884 1 4 81 0 2 214 4 0 616 0 17 175 9 0 314 8 12 81 11 12 25 1 2 544 10 22 24 1 15 120 chain 4704 chr4 191154276 + 146536068 146536128 Tigger5 388 + 325 385 198483 60 chain 18166 chr4 191154276 + 146554652 146555050 L1M1 2793 - 1743 2132 132418 13 0 1 33 1 0 95 37 34 35 1 0 8 2 0 22 50 44 21 39 42 41 chain 29395 chr4 191154276 + 146582141 146582449 AluYb8 318 + 0 308 87097 308 chain 25338 chr4 191154276 + 146587536 146587911 THE1C 375 - 0 375 103035 9 0 1 21 8 9 149 1 2 30 20 0 10 0 17 127 chain 6213 chr4 191154276 + 146588535 146588613 L1MB2 1706 - 815 893 183470 78 chain 111808 chr4 191154276 + 146597760 146599449 L1PB1 5432 - 2 1663 33716 4 1 0 8 2 0 25 1 0 23 1 0 18 16 31 10 27 15 16 7 6 37 1 0 16 2 1 51 3 1 9 2 0 3 2 0 10 10 8 24 15 11 184 0 4 109 0 1 47 0 6 46 5 6 72 3 0 58 43 19 58 0 3 185 0 1 56 0 1 403 1 0 75 chain 36861 chr4 191154276 + 146606498 146606961 LTR2 463 - 0 463 73714 88 14 15 97 1 0 263 chain 38304 chr4 191154276 + 146608181 146608651 MER4A1 472 + 2 472 71703 470 chain 20921 chr4 191154276 + 146609525 146609887 THE1D 372 + 1 372 124209 20 0 1 82 0 1 28 83 91 116 1 0 32 chain 18135 chr4 191154276 + 146610821 146611074 L1PA17 2846 + 2011 2264 132506 89 6 7 60 0 1 4 1 0 25 2 1 66 chain 118337 chr4 191154276 + 146614175 146615507 SVA_F 1814 - 0 1414 31678 10 5 0 617 1 0 10 1 0 172 1 113 304 23 0 188 chain 24575 chr4 191154276 + 146615553 146615902 SVA_F 1814 + 664 1274 107108 42 0 120 29 1 0 32 0 1 59 1 15 16 0 1 32 1 0 27 0 1 4 12 40 26 6 104 61 chain 37376 chr4 191154276 + 146619974 146620424 LTR7 482 + 0 482 72995 143 1 0 92 0 31 153 12 14 49 chain 246060 chr4 191154276 + 146620426 146623665 HERVH-int 3825 + 0 2997 16444 21 1 2 509 66 0 38 65 0 10 1 0 24 28 0 15 1 0 12 3 0 7 21 0 11 21 0 8 85 0 41 2 1 24 7 6 50 1 0 356 0 4 302 0 1 157 0 5 49 0 4 26 12 37 204 1 0 90 0 13 970 chain 4187 chr4 191154276 + 146621061 146621113 HERVH-int 3825 + 450 500 191887 39 2 0 11 chain 38086 chr4 191154276 + 146624207 146624655 LTR7 482 + 0 482 72007 224 0 1 39 0 31 124 12 14 49 chain 31226 chr4 191154276 + 146632044 146632464 MER84 505 + 7 451 82114 17 0 12 20 0 3 230 1 0 93 7 15 12 1 3 39 chain 5064 chr4 191154276 + 146635241 146635300 Tigger1 2417 + 2251 2310 194507 59 chain 9909 chr4 191154276 + 146646101 146646324 L1PB1 5432 + 5221 5422 161022 15 1 0 23 1 0 16 46 33 18 2 1 5 1 0 16 2 0 22 1 0 21 1 0 13 1 0 18 chain 3195 chr4 191154276 + 146649850 146649887 MER82 654 + 586 623 221020 37 chain 42530 chr4 191154276 + 146670252 146671288 L1MA2 4263 - 3537 4249 65980 68 6 11 80 0 1 83 18 1 123 0 1 4 6 9 4 1 0 11 1 0 19 1 0 60 26 25 12 310 0 40 17 11 36 12 13 30 11 14 51 1 0 5 chain 29043 chr4 191154276 + 146714499 146714877 MLT2A1 477 - 93 477 88790 37 0 1 23 1 0 149 1 5 26 0 1 57 0 1 84 chain 23945 chr4 191154276 + 146728631 146728910 AluSg7 307 - 16 296 110650 159 0 1 120 chain 14439 chr4 191154276 + 146747611 146747901 MER44A 345 + 1 308 143084 15 36 62 28 1 9 20 27 6 96 1 5 66 chain 35843 chr4 191154276 + 146753763 146754161 LTR7 482 + 0 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146902395 AluY 311 + 2 296 102568 131 1 0 163 chain 537191 chr4 191154276 + 146918906 146924995 L1PA4 6152 - 1 6140 3287 339 1 0 689 1 2 538 1 0 624 0 1 450 0 1 1146 0 1 799 0 2 215 5 11 268 0 1 488 1 0 231 0 40 293 chain 14297 chr4 191154276 + 146957112 146957462 L1PB1 5432 + 5091 5404 143570 12 12 3 8 1 0 24 1 0 9 19 14 6 2 0 53 2 1 16 1 0 44 8 7 8 5 0 7 12 5 19 8 5 10 3 4 26 1 0 19 1 0 13 chain 513666 chr4 191154276 + 146963423 146969587 L1PA6 6164 - 7 6164 5815 857 0 4 655 1 0 32 1 2 237 0 2 517 13 5 296 0 1 26 0 1 330 4 5 853 7 0 17 1 10 60 0 1 500 0 4 296 1 0 296 0 1 329 17 0 87 11 12 211 2 1 224 1 0 7 4 5 208 0 2 63 chain 4025 chr4 191154276 + 146994218 146994296 MER53 195 + 108 187 206995 44 17 18 17 chain 3322 chr4 191154276 + 147001840 147001878 MADE1 96 + 58 96 218526 38 chain 28788 chr4 191154276 + 147081771 147082150 MLT2A1 477 + 0 384 89951 142 0 1 18 9 13 210 chain 87101 chr4 191154276 + 147084464 147086010 L1PB2 3958 + 2608 3817 40738 265 12 10 41 1 0 316 2 1 66 9 7 49 1 0 9 4 0 63 22 16 27 0 1 59 1 0 8 3 1 112 314 0 22 2 1 71 2 0 22 1 0 42 chain 28881 chr4 191154276 + 147117843 147118157 AluYb8 318 - 5 318 89537 74 0 1 112 2 0 126 chain 27977 chr4 191154276 + 147154220 147154515 AluYk11 308 - 4 299 93087 295 chain 10393 chr4 191154276 + 147163993 147164110 AluYf4 310 + 172 290 158730 34 0 1 83 chain 51722 chr4 191154276 + 147225536 147226119 L1P1 4361 - 1352 1935 57805 583 chain 54914 chr4 191154276 + 147226119 147226731 L1PA3long 6157 + 5539 6152 55761 475 0 1 137 chain 129731 chr4 191154276 + 147243371 147244878 L1PA5 6144 - 2 1503 28144 7 5 0 145 0 1 156 2 0 535 1 6 45 0 1 95 7 0 108 3 0 254 0 4 144 chain 57866 chr4 191154276 + 147244878 147245517 L1PA5 6144 + 4035 4674 53997 639 chain 14751 chr4 191154276 + 147260975 147261161 L1PA8 5853 - 0 184 142097 93 1 0 17 1 0 54 0 1 6 1 0 13 chain 37273 chr4 191154276 + 147270354 147270906 L1PA16 3655 + 2935 3485 73128 33 19 17 93 2 5 121 1 0 14 8 7 64 4 2 124 5 6 64 chain 555314 chr4 191154276 + 147271170 147277203 L1PA2 6032 + 0 6031 790 1370 7 4 3281 0 1 1375 chain 46861 chr4 191154276 + 147297800 147298390 LTR10C 591 - 0 591 61341 255 6 8 184 8 7 137 chain 4678 chr4 191154276 + 147305856 147305914 MSTB 430 + 12 69 198769 4 1 0 53 chain 4718 chr4 191154276 + 147310188 147310276 L1PB4 2604 + 2447 2536 198303 50 23 24 15 chain 25808 chr4 191154276 + 147369085 147369379 L1PA4 6152 + 5859 6151 100837 5 2 0 287 chain 3622 chr4 191154276 + 147392283 147392324 Tigger4a 237 + 2 43 213315 41 chain 26467 chr4 191154276 + 147425389 147425694 AluYk4 311 + 0 305 98179 305 chain 14791 chr4 191154276 + 147445617 147446052 Tigger3 1187 - 68 364 141964 30 16 14 83 14 17 21 193 53 78 chain 13515 chr4 191154276 + 147447333 147447510 LTR2C 499 + 322 499 146302 17 1 0 37 3 0 7 0 3 54 0 1 58 chain 265740 chr4 191154276 + 147448613 147451711 HERVE-int 4064 + 0 3091 15404 458 0 1 248 1 4 99 0 1 722 25 1 272 0 1 561 5 7 65 0 1 382 0 8 260 chain 270535 chr4 191154276 + 147451711 147454791 L1PA4 6152 + 3046 6141 15161 204 0 4 32 0 1 228 0 1 175 0 2 23 0 1 1587 0 4 589 0 1 102 1 2 139 chain 3271 chr4 191154276 + 147457395 147457431 MADE1 96 - 59 95 219571 36 chain 106557 chr4 191154276 + 147457915 147459521 HERVL-int 5654 - 0 1311 35103 209 0 2 85 0 1 370 0 1 303 0 3 149 318 12 141 9 13 22 chain 6466 chr4 191154276 + 147459521 147459597 MLT2A2 560 - 484 560 181511 76 chain 30246 chr4 191154276 + 147462135 147462636 L1PREC2 3366 - 403 876 84067 11 4 1 25 0 1 4 4 1 14 7 2 16 33 25 10 7 3 44 1 0 54 6 4 5 1 0 26 2 0 227 chain 5199 chr4 191154276 + 147465213 147465279 L1PREC2 3366 - 2337 2403 193035 66 chain 552113 chr4 191154276 + 147474091 147480225 L1PA3long 6157 - 4 6153 1177 762 0 1 3023 0 1 504 0 15 1536 1 0 15 0 1 189 2 0 102 chain 167095 chr4 191154276 + 147491468 147493315 L1PA4 6152 - 0 1851 22385 332 0 3 433 0 1 1082 chain 62658 chr4 191154276 + 147493316 147494023 L1PA4 6152 + 3573 4281 51605 367 0 1 340 chain 146883 chr4 191154276 + 147514897 147516576 L1PA5 6144 + 4444 6127 25036 16 0 3 1530 9 10 124 chain 116388 chr4 191154276 + 147518121 147519744 THE1B-int 1605 - 0 1584 32317 9 1 2 89 0 1 164 10 8 133 8 5 57 0 1 379 0 9 7 19 33 102 0 1 57 0 1 96 38 21 277 57 0 99 0 12 21 chain 46713 chr4 191154276 + 147527684 147528228 L1PA6 6164 + 5617 6159 61445 537 2 0 5 chain 22506 chr4 191154276 + 147533981 147534274 AluYk4 311 + 14 303 118008 221 8 12 34 3 0 16 5 0 6 chain 3771 chr4 191154276 + 147537671 147537717 MADE1 96 - 1 47 210797 46 chain 197291 chr4 191154276 + 147539829 147541940 L1HS 6032 - 1264 3375 19404 2111 chain 116700 chr4 191154276 + 147541940 147543190 L1HS 6032 + 4782 6032 32135 1250 chain 539694 chr4 191154276 + 147584444 147590786 L1PA3long 6157 + 4 6157 2865 66 0 1 81 0 1 159 325 0 465 1 129 1765 0 1 1746 0 1 891 0 4 823 0 6 4 6 0 10 chain 40958 chr4 191154276 + 147594871 147595423 MLT2A2 560 + 0 560 67964 188 8 16 163 15 5 34 4 14 140 chain 261881 chr4 191154276 + 147598591 147601803 L1PA6 6164 + 2967 6162 15596 231 18 19 22 1 5 660 0 2 615 6 9 63 9 0 50 1 0 311 2 0 237 0 1 119 0 5 19 0 1 54 1 3 295 0 1 325 1 2 14 25 6 10 6 0 95 1 0 21 chain 3437 chr4 191154276 + 147640386 147640436 L1MA7 2200 - 1527 1579 216447 35 1 3 14 chain 19966 chr4 191154276 + 147642947 147643216 L1PA16 3655 + 1728 1996 127250 56 14 13 199 chain 18569 chr4 191154276 + 147644174 147644410 AluSq2 311 + 58 297 131308 147 0 1 73 1 3 15 chain 181987 chr4 191154276 + 147673147 147675210 L1PA4 6152 + 4067 6145 20787 344 0 16 587 7 8 609 12 10 504 chain 194432 chr4 191154276 + 147678576 147681172 L1PBa 3878 + 1130 3757 19635 352 14 0 11 0 19 93 41 12 196 0 5 887 0 3 51 1 5 30 1 6 242 8 53 127 3 0 493 2 1 22 2 0 12 1 0 7 chain 16819 chr4 191154276 + 147682023 147682370 L1PB1 5432 + 5103 5420 136067 11 1 0 24 1 0 9 16 11 11 2 0 7 8 0 45 5 0 16 1 0 44 1 0 15 3 0 7 16 6 18 16 26 20 1 0 18 1 0 13 1 0 16 chain 528853 chr4 191154276 + 147725106 147731563 L1PA7 6471 + 5 6466 4319 325 0 14 512 1 2 276 0 1 627 0 1 200 0 3 385 0 2 341 5 1 649 5 4 345 0 1 780 20 20 174 0 4 77 0 1 235 1 0 571 31 7 59 2 0 88 1 0 129 14 15 345 0 4 14 2 1 76 14 20 143 1 0 9 chain 176143 chr4 191154276 + 147738172 147740126 L1PA3long 6157 + 4083 6038 21341 1924 0 1 30 chain 10781 chr4 191154276 + 147740148 147740265 L1PA3long 6157 + 6038 6155 157071 117 chain 3566 chr4 191154276 + 147741618 147741799 L1MB7 1623 + 1252 1417 214194 14 47 37 22 68 62 30 chain 398160 chr4 191154276 + 147743287 147748253 L1PA8A 6298 - 7 4964 10168 179 3 1 104 5 6 150 26 6 108 4 5 162 0 2 78 2 1 542 0 3 980 1 2 91 1 0 75 1 2 95 0 1 1197 8 2 40 26 26 270 13 14 439 0 1 158 0 9 208 chain 4004 chr4 191154276 + 147756349 147756394 L1PA4 6152 + 6029 6074 207326 45 chain 21882 chr4 191154276 + 147789287 147789534 L1PA3long 6157 + 5910 6157 120705 247 chain 205943 chr4 191154276 + 147813512 147815834 L1PA4 6152 + 3815 6143 18795 539 0 4 576 10 8 356 0 4 841 chain 14951 chr4 191154276 + 147833157 147833379 MER30 238 - 0 238 141471 71 6 0 9 0 6 24 4 21 14 4 3 90 chain 24226 chr4 191154276 + 147887223 147887577 THE1A 353 + 0 353 109057 47 0 1 41 6 5 14 27 26 219 chain 124218 chr4 191154276 + 147887577 147889146 THE1A-int 1579 + 0 1579 29617 440 0 2 759 7 8 268 0 7 95 chain 19647 chr4 191154276 + 147916974 147917336 THE1B 368 + 0 368 128259 108 44 45 24 61 66 125 chain 29086 chr4 191154276 + 147920598 147920903 AluYa5 310 - 5 310 88610 305 chain 3271 chr4 191154276 + 148000077 148000113 MER20 218 - 140 176 219580 36 chain 25362 chr4 191154276 + 148003103 148003400 AluY 311 + 10 308 102872 117 1 2 179 chain 76998 chr4 191154276 + 148018456 148019575 L1PB1 5432 + 4334 5424 44969 130 7 17 135 8 5 96 0 1 276 2 4 39 16 16 50 5 0 11 3 0 20 1 0 13 16 11 9 2 0 70 1 0 44 1 0 15 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 90216 chr4 191154276 + 148026711 148028340 L1PREC2 3366 + 1746 3242 39573 156 5 14 103 0 1 108 0 2 382 0 4 236 2 0 41 15 14 38 57 45 15 6 1 15 8 6 17 27 4 5 1 0 10 22 8 26 16 14 33 159 97 14 56 41 19 10 5 10 4 0 8 1 0 4 chain 358810 chr4 191154276 + 148033111 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48 2 0 51 0 1 15 7 6 49 10 9 19 1 0 93 chain 29790 chr4 191154276 + 148151204 148151515 AluYb8 318 - 7 318 85504 311 chain 3960 chr4 191154276 + 148155468 148155515 Tigger2b_Pri 1066 - 1019 1066 207991 47 chain 471826 chr4 191154276 + 148176196 148181816 L1PA5 6144 + 0 6132 7976 120 0 14 49 0 1 8 21 1 976 9 0 521 0 551 138 0 4 155 0 3 161 0 4 69 0 4 385 4 2 1174 0 4 46 0 2 17 1 6 213 1 0 29 0 1 104 0 1 194 54 14 315 1 0 8 2 0 696 7 0 142 chain 9569 chr4 191154276 + 148191924 148192053 L1MA8 2339 - 1941 2067 162739 64 3 0 62 chain 519121 chr4 191154276 + 148213325 148219777 L1PA7 6471 + 0 6468 5252 411 0 1 121 0 12 202 1 0 593 0 1 8 6 0 212 1 0 70 2 1 209 0 2 103 10 20 21 1 2 116 10 17 382 8 0 99 6 7 27 1 2 67 0 4 179 0 4 101 13 4 255 8 2 198 0 8 36 1 0 156 8 0 229 0 1 121 5 6 196 1 2 31 0 10 8 11 1 159 1 4 101 0 2 145 5 9 192 0 1 84 1 0 19 6 5 424 4 5 7 0 2 26 0 1 8 1 0 45 4 1 114 2 0 7 1 2 176 0 1 660 6 0 10 chain 87357 chr4 191154276 + 148228030 148229083 L1PA7 6471 + 5416 6468 40631 293 0 1 83 0 1 45 6 5 292 0 1 322 3 0 9 chain 26153 chr4 191154276 + 148269042 148269491 MLT2A2 560 - 0 560 99396 109 37 47 11 0 98 77 51 50 79 0 3 36 0 1 49 chain 27261 chr4 191154276 + 148269538 148270099 Tigger3b 1229 + 659 1229 95401 18 134 150 9 5 0 66 3 0 44 0 1 8 4 6 11 10 9 187 11 10 51 chain 146681 chr4 191154276 + 148278389 148280057 SVA_D 2077 + 13 2077 25057 16 10 0 8 7 0 724 0 40 51 0 40 16 1 0 9 0 137 38 0 128 132 0 49 522 0 20 134 chain 21468 chr4 191154276 + 148296650 148296925 L1PA5 6144 - 4 279 122264 134 0 7 14 7 0 120 chain 20734 chr4 191154276 + 148307642 148307874 L1PA5 6144 + 5897 6129 124836 232 chain 61271 chr4 191154276 + 148314309 148315126 L1PB 1623 - 139 1085 52059 30 2 1 7 1 0 133 2 124 104 0 10 172 0 1 4 1 0 150 1 0 210 chain 91740 chr4 191154276 + 148315126 148316317 L1PB1 5432 + 3901 5103 39055 230 0 12 236 0 1 4 2 1 139 4 3 99 2 0 79 0 2 396 chain 240491 chr4 191154276 + 148324523 148327451 L1PA8A 6298 - 23 2959 16744 127 0 2 415 0 1 246 6 5 135 9 14 162 2 0 113 2 11 151 15 4 1430 5 7 35 0 4 9 2 0 31 0 1 33 chain 16480 chr4 191154276 + 148334346 148334631 Tigger3 1187 - 541 791 136983 23 2 1 23 2 1 24 2 0 11 31 0 26 1 0 111 0 1 29 chain 503147 chr4 191154276 + 148355782 148361333 L1PA3long 6157 + 609 6157 6663 2711 3 0 369 1 0 2246 0 1 221 chain 154905 chr4 191154276 + 148370676 148372356 L1PA2 6032 - 2271 3952 23899 812 0 1 868 chain 208112 chr4 191154276 + 148372356 148374614 L1PA2 6032 + 3772 6032 18629 5 0 1 628 0 1 1625 chain 23948 chr4 191154276 + 148379115 148379449 L1PA8 5853 + 5524 5853 110633 40 9 8 36 2 0 74 1 0 6 1 0 11 0 1 35 0 1 4 4 3 17 1 0 93 chain 531710 chr4 191154276 + 148387079 148393093 L1PA4 6152 - 0 6150 3998 113 0 1 2659 0 125 412 2 0 53 1 5 1130 0 1 202 0 2 62 1 0 150 0 1 881 12 11 81 11 17 244 chain 5266 chr4 191154276 + 148397268 148397330 MLT1A-int 1186 - 508 570 192365 62 chain 3597 chr4 191154276 + 148401114 148401157 MLT1G1 539 + 240 283 213716 43 chain 8405 chr4 191154276 + 148419604 148419791 MER58A 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66939 chr4 191154276 + 149622692 149623472 L1PA5 6144 - 5 795 49669 142 11 21 169 1 2 201 1 0 255 chain 3812 chr4 191154276 + 149626830 149626962 MLT1J 494 + 332 463 210199 18 72 71 42 chain 4635 chr4 191154276 + 149646273 149646393 MLT1A0 366 - 216 341 199252 5 0 2 45 47 52 16 2 0 5 chain 75717 chr4 191154276 + 149665884 149666734 L1PA3long 6157 - 1 852 45644 16 1 0 227 1 3 605 chain 24651 chr4 191154276 + 149671278 149671590 AluY 311 + 0 307 106714 123 10 5 179 chain 144708 chr4 191154276 + 149682260 149684047 L1PA7 6471 - 10 1820 25369 650 0 2 103 1 2 83 5 1 148 0 20 132 3 4 359 0 1 8 8 9 42 0 1 245 chain 95906 chr4 191154276 + 149684047 149685212 L1PA7 6471 + 3461 4628 37753 23 1 2 4 1 0 39 0 1 81 0 1 308 5 6 465 1 0 237 chain 142309 chr4 191154276 + 149686551 149688107 L1PA2 6032 - 0 1556 25728 1556 chain 162069 chr4 191154276 + 149688107 149689877 L1PA2 6032 + 2705 4479 23053 788 0 1 380 0 3 602 chain 3899 chr4 191154276 + 149704505 149704586 MER5A1 166 - 1 83 208872 20 21 22 40 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149837051 LTR17 781 + 0 685 57094 156 1 0 22 4 3 146 1 0 11 0 2 83 1 0 4 0 1 196 0 1 60 chain 388224 chr4 191154276 + 149850026 149855543 L1PB1 5432 + 67 5424 10507 234 7 0 7 0 7 37 15 17 221 41 40 671 0 1 18 1 0 28 0 16 31 1 0 8 20 0 8 13 11 226 13 19 177 0 1 50 1 0 356 4 5 240 1 0 4 6 1 86 2 0 77 0 1 44 0 2 99 1 13 19 1 0 49 0 9 479 50 23 318 50 21 141 3 1 335 0 1 410 0 1 83 22 0 59 0 1 330 99 11 33 16 11 9 2 0 20 0 13 20 2 1 16 1 0 40 44 31 17 15 12 9 2 0 24 5 7 13 0 3 11 1 0 16 1 0 4 chain 116212 chr4 191154276 + 149897386 149898694 L1PA4 6152 - 0 1313 32370 410 0 2 635 0 3 263 chain 75713 chr4 191154276 + 149898694 149899535 L1PA4 6152 + 4001 4843 45492 285 0 2 398 1 0 157 chain 32508 chr4 191154276 + 149907249 149907603 L1PA3long 6157 + 5788 6142 80009 354 chain 6233 chr4 191154276 + 149907646 149907720 THE1B-int 1605 + 1524 1598 183297 74 chain 30398 chr4 191154276 + 149959893 149960321 MLT2A1 477 + 0 464 83685 142 8 9 17 0 4 70 1 8 73 1 0 68 8 0 10 0 33 30 chain 453135 chr4 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150535777 150535933 MER30 238 - 0 172 158684 111 5 0 6 8 29 26 chain 11384 chr4 191154276 + 150537838 150538104 L1PA8 5853 + 5647 5836 154762 40 10 0 5 1 0 6 0 4 37 3 2 14 80 11 70 chain 4655 chr4 191154276 + 150537961 150538014 L1PA8 5853 + 5761 5814 199013 53 chain 29372 chr4 191154276 + 150547152 150547557 MLT2A1 477 + 0 398 87197 169 4 1 9 0 1 24 0 1 147 22 11 4 0 1 13 0 4 13 chain 30092 chr4 191154276 + 150558013 150558330 AluYb8 318 + 0 317 84510 317 chain 28772 chr4 191154276 + 150569468 150569793 L1PA5 6144 - 269 597 90007 129 0 3 196 chain 23555 chr4 191154276 + 150569793 150570060 L1PA5 6144 + 5877 6144 112821 267 chain 51912 chr4 191154276 + 150572916 150573613 L1PA8 5853 + 5157 5853 57675 403 3 2 39 4 7 57 15 14 10 1 0 11 0 1 39 2 1 19 1 0 93 chain 11521 chr4 191154276 + 150580190 150580328 L1P1 4361 - 1070 1209 153170 4 0 1 134 chain 165984 chr4 191154276 + 150580328 150582144 L1PA3long 6157 + 4338 6157 22514 120 0 3 1696 chain 188938 chr4 191154276 + 150587290 150589611 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191154276 + 150962950 150963148 MLT2B1 522 + 227 457 157425 40 7 41 24 36 34 91 chain 37090 chr4 191154276 + 150975042 150975496 MER9a1 513 + 39 513 73397 210 0 22 185 2 0 57 chain 6582 chr4 191154276 + 150975540 150975903 MER63C 923 + 44 421 180599 63 42 67 21 207 196 30 chain 28290 chr4 191154276 + 150978503 150978858 THE1A 353 + 0 353 91981 106 5 4 92 1 0 151 chain 86548 chr4 191154276 + 150995881 150996985 L1PA8A 6298 - 8 1125 40952 22 1 12 12 13 5 364 4 2 382 5 7 143 0 10 158 chain 23160 chr4 191154276 + 151030487 151030778 AluSc5 308 - 14 298 114856 14 3 0 153 4 0 117 chain 8413 chr4 191154276 + 151043262 151043385 Tigger1 2417 - 419 544 168778 41 16 18 66 chain 43653 chr4 191154276 + 151043399 151043911 L1PA7 6471 + 5951 6466 64627 144 0 3 368 chain 16446 chr4 191154276 + 151089523 151089723 MER50 708 + 483 684 137078 57 3 4 140 chain 29363 chr4 191154276 + 151149896 151150206 AluYb8 318 + 0 310 87231 310 chain 14719 chr4 191154276 + 151161756 151161914 L1PA2 6032 + 5874 6032 142202 158 chain 34922 chr4 191154276 + 151166540 151166932 L1PA5 6144 - 18 411 76306 135 1 2 256 chain 19836 chr4 191154276 + 151166932 151167150 L1PA5 6144 + 5507 5725 127692 218 chain 22484 chr4 191154276 + 151181929 151182213 AluSp 311 + 11 301 118087 25 12 18 247 chain 513421 chr4 191154276 + 151192065 151198580 L1PA7 6471 + 0 6468 5842 8 0 2 43 14 16 112 1 0 222 6 0 81 143 0 297 2 1 224 0 24 27 4 15 130 2 0 5 1 7 26 0 4 27 7 5 5 1 0 4 0 1 34 5 1 35 0 1 40 0 3 23 21 27 45 0 3 236 0 5 270 5 4 370 1 0 368 1 5 133 0 4 16 5 2 204 1 2 324 0 8 49 1 4 27 1 0 20 0 4 248 1 13 125 0 4 428 0 1 37 3 1 264 0 4 222 5 0 573 0 5 136 0 3 326 0 1 334 1 5 26 1 0 109 2 5 36 2 0 9 chain 20788 chr4 191154276 + 151212110 151212331 L1PA2 6032 - 3 224 124654 221 chain 78548 chr4 191154276 + 151212331 151213176 L1PA2 6032 + 4975 5820 44242 845 chain 4132 chr4 191154276 + 151246417 151246490 MLT1H 522 + 427 502 205461 25 10 11 25 0 1 13 chain 3554 chr4 191154276 + 151269114 151269184 MER3 215 - 33 119 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5 9 1057 0 1 914 0 502 157 1 0 122 0 2 125 0 2 7 chain 3059 chr4 191154276 + 151430177 151430237 L1MA7 2200 + 2052 2105 223828 27 14 7 19 chain 5145 chr4 191154276 + 151455436 151455492 L1PA3long 6157 + 6086 6142 193607 56 chain 38281 chr4 191154276 + 151459166 151459715 L1PA16 3655 + 2971 3516 71738 115 42 41 73 2 1 89 2 0 226 chain 69887 chr4 191154276 + 151473501 151474631 L1PA5 6144 + 5336 6143 48445 427 320 0 366 4 1 13 chain 20759 chr4 191154276 + 151476637 151476901 AluSc 308 + 17 278 124756 114 2 0 126 3 2 19 chain 173882 chr4 191154276 + 151484404 151486650 L1PA8 5853 + 3543 5843 21604 95 1 0 51 0 2 82 3 21 546 2 1 160 1 0 323 0 1 182 0 2 82 5 8 121 8 7 80 5 10 26 0 18 48 0 2 55 8 9 89 1 0 15 0 4 11 1 9 5 2 0 74 1 0 5 7 6 7 0 1 39 2 1 19 1 0 83 chain 23870 chr4 191154276 + 151528915 151529203 AluSg 306 + 9 292 111082 272 5 0 11 chain 3074 chr4 191154276 + 151529963 151530075 L1MB7 1623 - 33 123 223456 30 47 28 12 5 2 18 chain 37376 chr4 191154276 + 151541310 151541906 L1PB3 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151581682 SVA_F 1814 + 1095 1169 119997 33 1 0 4 2 0 33 1 0 4 chain 139972 chr4 191154276 + 151608942 151610613 L1PA7 6471 + 4798 6462 26148 4 1 0 314 5 4 497 1 4 259 10 2 580 chain 28636 chr4 191154276 + 151614433 151614738 AluYa5 310 + 0 304 90575 132 1 0 172 chain 30045 chr4 191154276 + 151647148 151647619 L1MA2 4263 + 267 742 84658 66 1 0 4 1 0 4 1 0 4 1 6 133 1 0 57 2 0 5 0 2 16 4 5 5 1 0 10 7 8 4 0 1 19 9 10 116 chain 23433 chr4 191154276 + 151647619 151647998 THE1D 372 - 0 372 113463 89 7 8 29 1 7 46 0 3 58 0 4 18 10 9 6 1 0 11 4 0 7 17 2 75 chain 37960 chr4 191154276 + 151705377 151705993 LTR9B 643 + 5 635 72193 62 3 6 30 25 33 53 15 12 6 0 5 13 0 1 101 2 0 5 3 7 82 21 22 74 0 1 4 2 0 66 17 15 32 chain 11671 chr4 191154276 + 151709010 151709205 L1MA2 4263 - 263 457 153592 35 18 16 99 9 10 34 chain 3563 chr4 191154276 + 151711003 151711046 L1PA6 6164 - 4 47 214265 43 chain 4436 chr4 191154276 + 151722920 151722972 MER106A 234 - 121 173 201510 52 chain 355668 chr4 191154276 + 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122843 chr4 191154276 + 151874498 151875927 SVA_B 1603 + 8 1596 30101 14 0 9 7 15 2 4 1 0 100 1 2 104 0 1 376 0 80 201 0 82 606 chain 23847 chr4 191154276 + 151878316 151878680 THE1B 368 - 0 368 111201 91 12 4 30 2 1 12 12 22 8 0 3 28 1 0 48 1 2 119 chain 108031 chr4 191154276 + 151878690 151880201 THE1B-int 1605 - 10 1605 34705 63 1 2 100 0 1 113 10 11 148 1 2 391 0 9 19 25 0 8 8 33 89 0 1 101 43 107 118 14 20 136 0 1 4 1 0 118 chain 127088 chr4 191154276 + 151884301 151885990 SVA_B 1603 + 0 1602 28794 22 34 19 390 116 0 406 0 82 34 0 40 37 78 0 572 chain 4683 chr4 191154276 + 151912421 151912481 L1ME1 1623 + 1230 1291 198711 31 0 1 29 chain 22713 chr4 191154276 + 151914687 151915042 THE1A 353 - 0 353 117020 219 53 52 34 0 1 34 2 0 13 chain 5426 chr4 191154276 + 151930341 151930409 MER2 342 + 147 215 190737 68 chain 23825 chr4 191154276 + 151930855 151931138 AluY 311 + 5 289 111333 127 0 1 156 chain 23423 chr4 191154276 + 151947381 151947657 AluSp 311 + 20 294 113510 112 2 0 162 chain 7731 chr4 191154276 + 151966892 151966988 Tigger3a 397 + 202 298 172709 96 chain 23594 chr4 191154276 + 151972488 151972780 AluSg7 307 - 13 307 112612 70 0 2 12 0 1 4 2 1 204 chain 21693 chr4 191154276 + 151978614 151978874 AluSp 311 - 52 311 121416 193 1 0 66 chain 12617 chr4 191154276 + 151988917 151989346 L1MB7 1623 - 179 553 149784 8 1 0 4 8 0 10 1 0 52 10 7 20 120 96 24 7 6 8 5 0 7 2 0 5 9 0 8 4 2 39 14 15 63 chain 26000 chr4 191154276 + 151998073 151998430 L1PA8 5853 - 0 347 100016 90 4 3 18 1 0 54 1 0 9 1 0 67 7 5 45 5 0 46 0 1 9 chain 5332 chr4 191154276 + 152009846 152009905 MER4A1_ 611 - 543 602 191713 59 chain 23847 chr4 191154276 + 152013737 152014100 MER4D1 891 - 226 582 111204 61 0 7 105 0 1 29 9 9 14 25 12 13 1 0 48 1 0 57 chain 48282 chr4 191154276 + 152078424 152079182 L1MA5A 2387 + 1576 2300 60260 13 3 7 39 1 0 105 4 1 175 7 10 106 4 3 34 1 0 38 1 0 48 20 18 12 2 0 30 3 0 15 18 0 7 8 0 59 1 0 4 chain 7337 chr4 191154276 + 152082798 152082877 L1PA5 6144 - 12 91 175179 79 chain 26601 chr4 191154276 + 152083147 152083499 L1PA8 5853 - 0 347 97653 93 1 0 19 2 1 48 1 0 13 1 0 71 2 0 8 0 2 34 1 0 58 chain 6303 chr4 191154276 + 152088865 152089073 SVA_F 1814 + 374 660 182771 39 19 21 36 50 47 20 17 20 10 1 77 16 chain 14229 chr4 191154276 + 152110591 152110957 THE1B 368 + 0 368 143797 61 72 75 36 71 80 42 18 8 66 chain 120713 chr4 191154276 + 152110957 152112539 THE1B-int 1605 + 0 1605 30789 24 0 1 10 0 2 370 19 44 148 2 0 556 1 2 10 4 5 4 1 0 79 15 12 36 1 0 302 chain 69133 chr4 191154276 + 152133592 152134513 Tigger1 2417 + 1132 2086 48748 64 3 8 338 0 3 213 11 12 59 1 14 62 0 7 109 3 7 58 chain 104054 chr4 191154276 + 152135018 152136257 SVA_D 2077 - 0 1460 35720 8 2 0 303 1 0 225 0 37 65 0 99 120 0 1 22 50 0 115 0 138 27 2 1 299 chain 4088 chr4 191154276 + 152135764 152135814 SVA_D 2077 - 1058 1107 96339 26 1 0 23 chain 30715 chr4 191154276 + 152154070 152154542 MER1A 529 + 0 529 83013 63 29 80 230 0 5 50 36 37 64 chain 73460 chr4 191154276 + 152157224 152158427 LTR12D 1347 + 0 1347 46808 159 1 15 31 38 21 10 0 17 11 18 18 14 0 36 204 42 32 100 1 0 25 137 12 314 12 242 86 chain 5304 chr4 191154276 + 152157878 152157936 LTR12D 1347 + 574 632 186659 58 chain 4304 chr4 191154276 + 152157939 152157987 LTR12D 1347 + 636 684 203170 48 chain 23181 chr4 191154276 + 152166024 152166317 AluSc8 310 + 11 306 114765 66 2 1 54 0 3 171 chain 152730 chr4 191154276 + 152175469 152177165 SVA_F 1814 - 4 1814 24262 8 1 0 5 3 0 538 0 1 44 0 49 169 0 66 832 1 3 95 chain 105795 chr4 191154276 + 152189595 152190755 L1PA3long 6157 - 0 1160 35306 147 0 1 709 1 0 303 chain 35857 chr4 191154276 + 152190773 152191325 Tigger3b 1229 - 464 1002 75054 66 3 2 7 0 1 6 2 4 113 37 23 155 5 6 56 2 0 31 1 0 68 chain 21463 chr4 191154276 + 152223929 152224179 L1PA5 6144 + 5887 6144 122280 19 0 6 144 0 1 87 chain 27767 chr4 191154276 + 152228166 152228473 AluYa5 310 - 7 310 93813 177 5 1 125 chain 2440 chr4 191154276 + 152257389 152257503 MER3 215 - 134 168 233874 11 80 0 23 chain 58607 chr4 191154276 + 152274073 152274924 LTR12 884 - 0 884 53636 175 1 0 114 104 1 14 5 9 103 11 14 77 2 0 36 0 132 209 chain 30157 chr4 191154276 + 152275718 152276117 L1PA8 5853 - 0 395 84315 92 2 1 19 2 1 61 1 0 117 2 1 103 chain 4941 chr4 191154276 + 152297291 152297349 MER5A1 166 + 9 67 195788 58 chain 31595 chr4 191154276 + 152301659 152302085 L1PB4 2604 + 1980 2406 81500 287 0 1 6 7 6 10 1 3 93 2 0 20 chain 193865 chr4 191154276 + 152306344 152308869 Charlie3 2679 - 0 2529 19695 67 5 0 9 2 0 206 0 5 376 5 4 317 0 1 309 0 4 117 7 10 125 1 9 282 4 18 126 0 3 60 0 1 8 1 0 56 44 15 21 0 3 377 chain 145920 chr4 191154276 + 152311349 152312938 SVA_E 1901 + 0 1879 25187 153 2 0 171 3 0 493 1 0 21 0 296 745 chain 68298 chr4 191154276 + 152315347 152316429 L1PA16 3655 + 2502 3589 49122 22 8 9 89 19 18 32 17 16 55 56 60 27 16 17 53 1 0 4 0 4 14 1 0 58 0 2 222 1 0 86 2 0 30 0 1 94 0 1 47 1 2 113 3 0 11 chain 25849 chr4 191154276 + 152323719 152324063 THE1D 372 + 0 372 100663 156 13 42 142 1 0 32 chain 4042 chr4 191154276 + 152338567 152338627 MER51A 677 - 282 414 206770 30 1 73 29 chain 77300 chr4 191154276 + 152340741 152341560 L1HS 6032 - 0 819 44832 819 chain 220233 chr4 191154276 + 152386373 152389141 L1PA8 5853 + 3040 5847 17868 102 5 7 167 1 0 72 5 0 6 21 13 8 0 13 298 0 2 96 0 39 44 0 2 430 0 1 447 0 2 216 7 10 78 0 1 384 11 6 80 1 0 46 2 0 72 1 0 6 1 0 52 2 1 19 1 0 87 chain 18505 chr4 191154276 + 152392792 152393215 L1PB1 5432 - 12 402 131483 16 1 0 13 1 0 21 1 0 24 12 10 4 1 0 5 2 0 18 17 7 6 3 0 14 6 5 37 10 9 10 11 9 42 19 13 10 1 0 13 1 0 20 3 0 7 1 4 73 chain 8598 chr4 191154276 + 152402698 152402798 MER41B 635 - 54 154 167742 100 chain 262340 chr4 191154276 + 152411051 152415200 L1PBa 3878 + 111 3748 15568 14 8 4 16 75 27 42 147 0 23 2 0 286 1 0 78 9 19 15 6 8 127 3 4 13 0 1 6 1 0 115 0 3 43 5 7 18 1 0 6 0 1 54 0 3 416 0 4 150 2 0 10 2 0 170 0 1 58 8 0 458 329 0 17 3 0 129 0 1 4 1 0 31 4 6 53 2 1 54 1 3 99 6 7 21 12 13 28 0 4 269 1 3 86 5 9 41 1 2 25 5 0 498 2 1 22 2 0 10 chain 26175 chr4 191154276 + 152420743 152421112 THE1C 375 - 0 373 99303 25 1 0 36 0 1 118 9 14 75 11 10 94 chain 558164 chr4 191154276 + 152432452 152438611 L1PA3long 6157 + 4 6155 484 1035 14 0 2907 0 1 332 0 1 77 0 4 304 1 0 1316 0 1 173 chain 24062 chr4 191154276 + 152438891 152439526 Tigger3 1187 + 499 1116 109972 44 1 0 14 6 0 14 4 3 27 96 93 8 1 0 43 1 0 4 4 1 19 28 0 10 1 28 35 0 4 55 36 42 20 10 0 16 5 4 14 17 19 63 11 9 28 chain 158870 chr4 191154276 + 152446906 152448727 SVA_D 2077 - 0 2077 23477 7 2 0 5 2 0 642 1 0 22 9 8 4 0 1 207 2 265 13 3 1 141 3 0 33 0 3 725 chain 22627 chr4 191154276 + 152453872 152454179 THE1A 353 - 40 353 117441 123 0 3 75 4 3 73 8 12 24 chain 7550 chr4 191154276 + 152469471 152469778 MER41A 554 + 0 296 74335 81 14 15 113 22 10 77 chain 40317 chr4 191154276 + 152469995 152470533 LTR10A 586 - 13 586 68859 64 8 6 220 1 2 40 9 39 107 0 6 89 chain 7083 chr4 191154276 + 152470664 152470952 MER41A 554 + 296 546 74335 30 43 0 104 0 1 62 4 8 45 chain 134083 chr4 191154276 + 152472423 152473984 L1PA6 6164 + 4591 6162 27183 584 0 4 133 0 4 132 3 4 473 0 1 236 chain 5702 chr4 191154276 + 152486880 152486959 MADE1 96 - 1 96 188093 33 4 20 42 chain 11565 chr4 191154276 + 152508670 152508803 L1PA4 6152 - 0 133 154045 133 chain 531073 chr4 191154276 + 152512616 152519643 L1PA7 6471 - 10 6471 4073 201 0 3 107 0 1 29 21 0 35 0 4 277 303 0 177 0 7 981 0 1 29 0 2 533 2 1 7 0 21 216 1 0 11 0 1 7 0 16 173 299 0 47 2 1 219 3 2 4 0 1 232 4 0 11 0 4 74 0 5 92 4 0 282 1 2 4 0 1 118 0 2 34 1 0 33 1 0 132 0 1 4 5 4 145 1 5 133 1 0 270 1 0 388 0 1 9 1 0 948 2 1 10 3 0 109 0 2 110 2 3 178 chain 24658 chr4 191154276 + 152522957 152523296 THE1B 368 - 0 344 106681 49 5 13 105 3 1 26 6 5 145 chain 14751 chr4 191154276 + 152562606 152562799 MER30 238 + 24 238 142099 83 4 0 14 0 25 92 chain 4815 chr4 191154276 + 152610758 152610835 MADE1 96 + 0 96 197169 20 6 7 9 0 18 42 chain 80360 chr4 191154276 + 152651189 152652235 L1PBa1 4058 + 602 1659 43450 16 13 12 20 3 16 112 1 0 217 0 3 307 7 4 134 10 8 5 0 2 201 chain 138606 chr4 191154276 + 152652236 152653886 SVA_C 1631 + 0 1631 26379 15 6 5 31 0 4 747 52 35 20 6 1 52 1 0 45 2 0 41 0 1 334 4 6 294 chain 2472 chr4 191154276 + 152653059 152653087 SVA_C 1631 + 851 879 146328 28 chain 218055 chr4 191154276 + 152654066 152656885 L1PB1 5432 + 2260 5103 18001 190 0 3 35 4 0 345 1 0 21 2 3 34 0 3 41 0 4 78 1 12 14 2 1 18 0 1 15 14 15 187 0 1 136 0 1 64 5 9 137 6 8 84 1 0 231 6 18 148 0 2 386 0 1 120 11 0 79 1 0 289 7 3 106 chain 21790 chr4 191154276 + 152657830 152658171 THE1B 368 + 0 366 121063 17 0 1 26 0 15 113 62 71 123 chain 25824 chr4 191154276 + 152663242 152663538 AluYk4 311 - 14 310 100775 296 chain 150235 chr4 191154276 + 152669104 152670788 L1PA5 6144 + 4421 6132 24578 409 0 2 465 0 4 268 1 0 425 1 3 39 0 20 76 chain 284844 chr4 191154276 + 152735294 152738980 HERVH-int 3825 - 0 3825 14362 225 0 2 231 13 14 15 8 218 36 19 21 90 165 0 220 4 3 4 0 1 447 0 1 272 0 10 226 0 1 72 4 31 904 0 3 13 0 2 7 1 2 37 21 0 20 1 0 25 11 80 12 1 0 10 1 0 24 0 1 4 1 0 11 1 0 530 chain 28627 chr4 191154276 + 152738994 152739385 LTR7 482 - 12 482 90621 146 0 10 34 1 0 19 5 37 109 9 47 68 chain 5572 chr4 191154276 + 152747346 152747419 Tigger1 2417 - 1062 1135 189355 73 chain 89475 chr4 191154276 + 152766581 152767679 L1PA7 6471 - 12 1260 39816 223 2 1 205 5 6 167 1 147 86 0 3 232 1 2 176 chain 7349 chr4 191154276 + 152771325 152771446 MIR 256 + 33 150 175097 49 4 5 14 11 6 43 chain 2802 chr4 191154276 + 152824556 152824586 L1M3de 1393 - 569 599 228711 30 chain 5940 chr4 191154276 + 152850846 152851014 MER58A 224 - 9 186 185784 47 83 92 38 chain 22042 chr4 191154276 + 152862831 152863180 THE1B 368 + 0 353 120061 169 1 0 21 7 10 9 1 5 18 1 0 7 21 20 47 1 0 4 1 2 41 chain 112643 chr4 191154276 + 152867439 152868957 THE1C-int 1605 + 16 1589 33487 98 1 55 135 6 1 24 0 6 110 0 7 25 0 2 4 1 0 84 11 14 15 4 5 563 23 10 20 1 0 4 2 3 356 0 1 31 chain 23472 chr4 191154276 + 152868973 152869305 THE1C 375 + 0 333 113266 57 1 0 4 10 11 99 1 0 4 1 2 9 0 1 146 chain 29113 chr4 191154276 + 152899881 152900356 MER1A 529 - 0 520 88490 13 1 2 43 10 14 256 73 113 79 chain 30423 chr4 191154276 + 152918971 152919446 MER1A 529 + 0 518 83647 25 18 23 39 8 48 38 1 2 281 2 0 5 32 31 26 chain 33754 chr4 191154276 + 152952934 152953472 MLT2A2 560 - 0 560 78015 55 0 1 38 5 6 44 0 17 49 10 39 96 72 46 169 chain 61122 chr4 191154276 + 152999274 152999990 L1PA7 6471 + 5752 6470 52285 383 0 2 177 1 0 137 0 1 18 chain 4543 chr4 191154276 + 153027623 153027685 MER53 195 + 1 61 200307 31 2 0 29 chain 3822 chr4 191154276 + 153041743 153041791 L1ME1 1623 - 336 384 210054 48 chain 408499 chr4 191154276 + 153044531 153049902 L1PB1 5432 - 15 5355 9844 13 1 0 13 1 0 21 1 0 23 3 1 14 1 0 4 3 1 17 7 8 6 3 0 15 1 0 45 2 1 14 2 1 8 1 0 42 3 1 11 6 2 9 1 0 13 1 0 9 10 22 209 1 0 266 3 0 68 6 0 10 1 0 402 0 43 149 1 0 101 1 0 61 1 0 4 0 1 52 4 1 12 30 0 229 5 6 58 0 9 546 18 0 34 2 0 6 5 7 331 13 11 99 8 13 35 1 0 190 1 0 440 0 1 304 2 0 5 17 10 627 5 0 602 28 30 54 chain 108802 chr4 191154276 + 153060395 153061614 L1PA2 6032 + 4807 6029 34486 1048 0 2 9 8 9 154 chain 223642 chr4 191154276 + 153062260 153064832 L1PA6 6164 + 3590 6162 17676 2572 chain 24591 chr4 191154276 + 153065705 153066059 THE1A 353 - 0 353 107037 31 11 12 112 1 0 78 11 10 110 chain 127392 chr4 191154276 + 153066059 153067623 THE1A-int 1579 - 0 1578 28721 588 0 1 492 1 0 419 0 12 50 0 2 14 chain 26227 chr4 191154276 + 153067624 153067977 THE1A 353 - 0 351 99105 155 1 0 78 12 11 107 chain 17694 chr4 191154276 + 153100416 153100730 MER2 342 - 22 326 133719 55 0 1 70 10 6 72 3 0 20 51 47 33 chain 2943 chr4 191154276 + 153138166 153138202 MLT2B1 522 - 0 40 226270 6 0 4 30 chain 20617 chr4 191154276 + 153151074 153151357 MER1B 344 + 51 339 125236 210 18 23 55 chain 3126 chr4 191154276 + 153155756 153155924 MER58A 224 - 11 173 222431 24 118 112 26 chain 2833 chr4 191154276 + 153176458 153176490 U2 167 - 135 167 228167 32 chain 6830 chr4 191154276 + 153182517 153182777 L1MA9 1812 + 1359 1597 178721 29 1 0 19 14 9 5 1 0 24 109 97 23 4 2 13 1 0 17 chain 18213 chr4 191154276 + 153184550 153184741 AluYb8 318 + 121 312 132304 191 chain 3406 chr4 191154276 + 153266617 153266691 MER20 218 - 23 122 216980 29 23 48 22 chain 18515 chr4 191154276 + 153283680 153284001 AluSg7 307 + 0 301 131457 81 9 0 5 7 0 28 17 15 13 3 0 7 3 6 111 12 10 25 chain 61632 chr4 191154276 + 153287707 153288433 L1PA6 6164 + 5429 6160 52064 101 3 0 86 0 8 536 chain 24588 chr4 191154276 + 153360742 153361038 AluY 311 + 7 303 107047 75 0 1 40 1 0 180 chain 2666 chr4 191154276 + 153398338 153398386 LTR40b 463 + 416 463 230818 22 9 8 17 chain 4329 chr4 191154276 + 153420458 153420511 MLT1N2 510 - 327 380 202848 53 chain 5872 chr4 191154276 + 153427212 153427292 Tigger3b 1229 - 942 1028 186458 37 0 6 43 chain 29648 chr4 191154276 + 153441303 153441611 AluYb9 318 + 0 308 86079 308 chain 16182 chr4 191154276 + 153486827 153487045 MER30 238 + 0 238 137812 105 7 21 33 1 7 72 chain 27217 chr4 191154276 + 153490530 153490845 AluY 311 + 0 311 95530 127 4 0 184 chain 42451 chr4 191154276 + 153505469 153506005 MLT2A2 560 - 10 560 66076 137 0 11 18 2 3 54 0 1 287 0 1 38 chain 2836 chr4 191154276 + 153563777 153563820 MER3 215 + 136 183 228138 5 2 0 28 0 6 8 chain 33626 chr4 191154276 + 153579179 153580198 L1MA4A 3247 + 392 3116 78205 20 0 1 66 9 6 87 21 15 102 33 31 90 1 0 15 409 2128 18 3 0 87 7 8 41 1 0 9 chain 31750 chr4 191154276 + 153585240 153585658 L1PA8 5853 + 5408 5818 81247 156 1 0 46 2 0 68 2 1 21 2 0 40 2 1 19 1 0 58 chain 4439 chr4 191154276 + 153614756 153614821 L1MA8 2339 + 2119 2183 201461 42 3 2 20 chain 3282 chr4 191154276 + 153638227 153638267 L1MC3 1789 - 415 455 219319 40 chain 7766 chr4 191154276 + 153639159 153639345 MLT1A0 366 - 12 199 172503 87 76 77 23 chain 5199 chr4 191154276 + 153654123 153654187 MSTA 426 + 355 419 193027 64 chain 41569 chr4 191154276 + 153662506 153662947 LTR7Y 441 - 0 441 67199 441 chain 293829 chr4 191154276 + 153664180 153667849 HERVH-int 3825 - 0 3816 13777 225 3 8 254 8 218 107 0 1 637 0 1 446 0 1 6 1 0 232 0 4 83 0 4 257 1 0 425 4 8 127 0 3 12 0 2 7 0 1 57 2 1 38 6 56 19 1 0 5 1 0 9 2 1 5 64 0 31 69 0 525 chain 40543 chr4 191154276 + 153667858 153668299 LTR7Y 441 - 0 441 68527 441 chain 82461 chr4 191154276 + 153670078 153670987 L1PA3long 6157 - 1337 2251 42446 171 0 5 738 chain 120582 chr4 191154276 + 153670987 153672323 L1PA3long 6157 + 4819 6157 30846 769 0 1 409 1 2 157 chain 130496 chr4 191154276 + 153685787 153687266 SVA_B 1603 - 8 1559 27965 448 1 2 169 1 0 9 4 0 42 4 0 33 0 40 256 0 40 512 chain 22081 chr4 191154276 + 153719127 153719420 AluSx1 309 + 0 288 119886 119 1 9 47 18 5 108 chain 28931 chr4 191154276 + 153736887 153737195 AluYa5 310 - 2 310 89323 308 chain 13165 chr4 191154276 + 153752934 153753095 L1PA8 5853 - 6 165 147598 87 1 0 19 2 1 52 chain 319419 chr4 191154276 + 153757972 153762979 L1PB1 5432 - 19 4404 12617 9 1 0 12 1 0 22 1 0 25 1 0 13 7 13 10 32 20 8 1 0 44 3 1 15 2 1 8 0 1 44 2 0 9 16 11 10 1 0 6 18 17 11 1 0 106 3 6 173 7 15 9 8 0 64 1 0 100 5 0 7 7 9 105 0 2 425 3 7 349 5 0 236 0 1 148 1 0 305 8 9 490 0 1 41 9 0 154 15 16 13 0 1 29 0 35 52 0 1 567 9 20 6 6 0 83 631 0 100 16 11 5 2 0 8 1 0 148 0 4 214 chain 28617 chr4 191154276 + 153763158 153763482 LTR17 781 + 0 324 90669 324 chain 146823 chr4 191154276 + 153787033 153788705 SVA_D 2077 - 11 2071 25042 359 0 1 251 0 1 17 0 49 31 0 1 14 0 256 32 0 52 9 0 2 30 8 45 303 0 1 587 10 0 9 1 0 6 1 0 4 chain 28512 chr4 191154276 + 153796909 153797263 THE1A 353 + 0 353 91134 110 1 0 243 chain 119587 chr4 191154276 + 153797263 153798800 THE1A-int 1579 + 0 1579 31185 15 10 12 185 2 23 267 3 4 470 15 14 249 0 9 45 7 8 115 1 0 9 6 22 38 7 1 93 chain 26217 chr4 191154276 + 153819132 153819432 AluSg7 307 - 5 306 99134 28 0 1 272 chain 291299 chr4 191154276 + 153842970 153846164 L1PA3long 6157 + 2954 6149 13940 276 0 1 1569 1 3 506 2 0 650 1 0 89 0 1 100 chain 4345 chr4 191154276 + 153848509 153848565 MER4A 717 - 0 56 202658 8 1 0 4 0 1 43 chain 6132 chr4 191154276 + 153869452 153869577 L1MB3 1562 + 1299 1430 184149 23 0 5 11 0 1 12 1 0 11 26 28 31 1 0 9 chain 23001 chr4 191154276 + 153939302 153939647 THE1D 372 - 0 365 115619 148 40 55 33 1 5 60 0 1 63 chain 12522 chr4 191154276 + 153981966 153982206 L1PA11 4918 + 4357 4578 150153 36 2 1 13 2 0 68 2 0 13 1 0 20 1 0 9 8 3 10 13 9 15 1 0 13 2 0 11 chain 21751 chr4 191154276 + 153990330 153990657 MSTA 426 + 47 391 121202 156 1 0 5 12 21 57 26 34 47 0 1 23 chain 21261 chr4 191154276 + 153992462 153992806 THE1B 368 - 0 368 122988 125 35 45 20 7 6 104 9 24 44 chain 131575 chr4 191154276 + 154021178 154029853 L1PREC2 3366 + 925 3040 27725 56 5 0 249 53 56 24 0 3 102 19 21 119 3 4 145 1 0 78 22 4 472 8 12 24 0 1 48 6532 5 73 0 1 165 0 1 129 1 0 35 2 0 47 10 9 17 6 7 18 50 38 16 11 6 11 2 1 29 63 59 30 chain 44492 chr4 191154276 + 154039175 154039725 MER41A 554 + 0 553 63588 165 2 4 200 4 5 179 chain 41393 chr4 191154276 + 154060708 154061247 MLT2A2 560 + 0 560 67423 162 19 18 108 0 6 112 0 11 41 0 5 97 chain 3531 chr4 191154276 + 154061536 154061578 L1MB3 1562 - 50 92 214850 42 chain 3909 chr4 191154276 + 154067354 154067434 L1ME1 1623 - 499 575 208718 34 22 18 24 chain 22319 chr4 191154276 + 154119372 154119707 THE1A 353 + 0 334 118831 105 16 15 86 0 3 8 3 0 7 18 18 92 chain 3041 chr4 191154276 + 154153277 154153350 MLT1B 390 - 307 380 224188 31 27 27 15 chain 42868 chr4 191154276 + 154174665 154175210 MER41A 554 + 0 554 65575 123 11 20 411 chain 23229 chr4 191154276 + 154188537 154188808 AluY 311 + 15 288 114546 117 0 1 57 0 1 97 chain 17014 chr4 191154276 + 154220353 154220663 L1MA8 2339 - 254 521 135553 63 0 13 49 11 9 20 49 0 89 9 4 20 chain 38120 chr4 191154276 + 154220709 154221227 LTR10A 586 + 23 574 71955 36 0 8 7 0 1 28 0 21 20 6 5 53 10 11 68 1 2 14 1 2 148 0 1 126 chain 20243 chr4 191154276 + 154227038 154227296 AluSg 306 + 32 296 126403 141 3 9 114 chain 40822 chr4 191154276 + 154233070 154233525 L1PA3long 6157 - 1 457 68141 75 0 1 380 chain 38600 chr4 191154276 + 154233525 154233944 L1PA3long 6157 + 5313 5732 71293 419 chain 24703 chr4 191154276 + 154235335 154235595 AluYa5 310 + 45 305 106417 260 chain 13718 chr4 191154276 + 154338760 154338963 Tigger3b 1229 - 678 887 145548 14 5 7 55 0 1 74 7 10 48 chain 25411 chr4 191154276 + 154340825 154341201 THE1C 375 - 0 375 102631 25 1 0 78 2 1 48 8 11 25 1 0 6 0 1 55 3 0 15 3 4 106 chain 25780 chr4 191154276 + 154358959 154359268 AluYc 301 + 0 292 100964 114 17 0 178 chain 12381 chr4 191154276 + 154366227 154366363 L1PA5 6144 - 0 136 150706 136 chain 5408 chr4 191154276 + 154381852 154381915 L1PA5 6144 - 1320 1383 190907 63 chain 116760 chr4 191154276 + 154381915 154383253 L1PA5 6144 + 4812 6144 32205 88 0 4 704 12 4 524 2 0 8 chain 22157 chr4 191154276 + 154457899 154458308 MLT2A2 560 - 45 560 119564 25 11 10 19 1 9 39 2 111 24 1 0 43 54 42 15 10 8 137 0 5 28 chain 44702 chr4 191154276 + 154458438 154458990 MER41A 554 - 0 554 63375 303 0 1 140 2 3 107 chain 4224 chr4 191154276 + 154485567 154485621 MLT1A0 366 + 255 316 204253 22 0 7 32 chain 5120 chr4 191154276 + 154583785 154583958 HAL1-2a_MD 234 - 72 229 193875 12 1 5 23 3 0 11 3 0 24 45 7 13 9 0 9 3 36 17 chain 23543 chr4 191154276 + 154586046 154586406 THE1A 353 + 0 353 112894 15 2 0 32 7 8 39 1 0 17 0 2 6 17 15 167 9 4 48 chain 119454 chr4 191154276 + 154586406 154587944 THE1A-int 1579 + 0 1574 31242 446 0 10 65 1 2 70 4 14 37 6 8 4 0 1 203 1 0 441 22 22 190 1 0 5 1 15 41 chain 25567 chr4 191154276 + 154587949 154588304 THE1A 353 + 0 353 101891 15 2 0 32 1 0 4 0 2 43 1 0 15 0 2 6 8 6 228 chain 30080 chr4 191154276 + 154594055 154594437 MLT2A1 477 + 0 382 84563 69 1 2 97 4 2 11 0 1 200 chain 49672 chr4 191154276 + 154601727 154602312 L1PA6 6164 + 5567 6156 59254 26 0 2 360 7 9 192 chain 6146 chr4 191154276 + 154607404 154607480 MSTD 398 - 322 398 184022 76 chain 37058 chr4 191154276 + 154609519 154610024 MER9a3 513 - 0 510 73444 78 0 1 173 6 5 59 0 1 4 12 13 68 0 1 86 8 10 11 chain 373935 chr4 191154276 + 154610026 154614405 HERVK9-int 4720 - 0 4385 10964 313 0 1 25 4 5 10 1 0 1066 0 1 217 0 5 86 0 2 471 0 1 817 2 0 208 16 15 264 0 1 121 2 0 756 chain 40104 chr4 191154276 + 154615070 154615579 MER9a3 513 - 0 513 69174 78 0 1 178 1 0 64 12 13 68 0 1 90 0 2 18 chain 5458 chr4 191154276 + 154663007 154663083 MADE1 96 - 3 95 190438 45 1 17 30 chain 3723 chr4 191154276 + 154670315 154670360 MIRc 230 + 76 121 211584 45 chain 8691 chr4 191154276 + 154671012 154671122 MLT1B 390 + 280 390 167245 110 chain 18592 chr4 191154276 + 154688107 154688534 L1PB1 5432 + 5032 5422 131252 71 15 11 20 1 0 13 1 0 7 9 5 9 2 0 9 0 2 41 2 1 15 1 0 45 1 0 15 3 0 5 1 0 9 45 31 5 2 0 15 10 9 17 12 10 7 1 0 18 chain 19332 chr4 191154276 + 154700581 154700844 Tigger3c 601 + 54 531 129139 28 0 213 46 0 1 162 2 0 7 0 2 18 chain 153439 chr4 191154276 + 154739193 154741099 L1PA10 4194 + 2240 4159 24167 198 0 2 128 13 9 45 0 2 24 0 2 26 0 4 464 6 5 298 0 3 535 0 9 122 3 0 34 1 0 9 chain 29444 chr4 191154276 + 154747430 154747771 L1PA7 6471 - 16 359 86878 134 0 1 200 0 1 7 chain 114093 chr4 191154276 + 154747771 154749157 L1PA7 6471 + 4708 6095 33077 241 1 0 24 0 1 358 0 5 200 0 5 78 12 8 177 0 3 150 9 1 136 chain 2843 chr4 191154276 + 154754623 154754656 MER57B2 428 + 395 428 227970 33 chain 29082 chr4 191154276 + 154774254 154775448 L1PB1 5432 - 10 804 16127 18 1 0 13 1 0 21 1 0 24 2 0 14 9 6 18 22 12 16 1 0 44 2 1 14 2 1 50 19 13 13 1 0 10 1 0 20 383 11 296 4 3 19 0 1 70 0 1 85 chain 338902 chr4 191154276 + 154777188 154781343 L1P3 4156 - 17 4156 11923 24 2 1 7 2 0 272 0 2 7 11 1 96 15 7 54 1 0 125 0 4 862 1 2 46 6 2 109 1 5 980 1 2 1076 0 1 134 1 0 57 1 0 12 1 0 251 chain 78843 chr4 191154276 + 154781364 154784601 L1PB1 5432 - 1144 3995 16127 116 0 2 201 6 7 126 0 2 100 9 8 22 327 0 48 8 9 115 0 4 139 0 1 139 1 0 61 17 6 19 7 6 172 46 0 143 2 0 6 1 3 308 0 1 29 5 0 18 10 0 162 1 2 117 0 1 544 7 3 11 0 9 146 3 0 45 chain 3928 chr4 191154276 + 154789743 154789788 THE1B-int 1605 + 1549 1594 208453 45 chain 23767 chr4 191154276 + 154815631 154816006 THE1D 372 - 0 372 111670 32 1 0 115 1 0 25 30 35 47 6 7 64 10 1 31 0 2 13 chain 20104 chr4 191154276 + 154819225 154819504 L1PA16 3655 - 77 355 126814 25 1 0 195 7 7 51 chain 18734 chr4 191154276 + 154876871 154877077 L1PA5 6144 - 3430 3636 130591 206 chain 299845 chr4 191154276 + 154877077 154880476 L1PA5 6144 + 2743 6144 13433 667 0 1 2394 0 1 338 chain 14134 chr4 191154276 + 154886587 154886764 L1PA5 6144 + 5972 6144 144091 166 5 0 6 chain 6933 chr4 191154276 + 154897280 154897421 MSTA 426 + 272 426 177944 23 27 42 52 9 7 30 chain 544530 chr4 191154276 + 154899232 154905375 L1PA4 6152 - 1 6151 2137 339 2 1 507 0 3 3065 0 1 639 0 4 1591 chain 185115 chr4 191154276 + 154914924 154917555 L1PB1 5432 - 19 2610 20492 9 1 0 13 1 0 21 1 0 24 2 0 11 11 8 30 12 1 10 16 15 33 8 7 10 2 1 53 2 0 8 2 0 3 2 0 9 1 0 7 1 0 25 5 0 12 1 0 282 14 6 9 0 7 8 4 1 162 3 0 56 8 7 47 0 2 42 7 9 30 0 1 20 20 20 611 20 21 57 1 2 100 4 1 489 0 1 182 1 0 108 chain 10227 chr4 191154276 + 154919399 154919626 L1MA6 2487 - 2168 2400 159480 53 76 82 67 1 0 30 chain 3074 chr4 191154276 + 154934308 154934345 MLT2D 439 + 402 439 223459 37 chain 47007 chr4 191154276 + 154944778 154945518 LTR1 825 + 28 825 61203 10 0 5 188 88 104 72 0 13 114 1 0 40 2 1 15 0 4 15 1 2 51 0 3 21 9 0 8 1 27 104 chain 5126 chr4 191154276 + 154948898 154948958 L1MB1 2102 - 100 160 193817 60 chain 28526 chr4 191154276 + 154971940 154972238 AluYd8 298 - 0 298 91074 298 chain 74215 chr4 191154276 + 155014552 155015383 L1PA4 6152 - 0 836 46406 6 0 5 825 chain 23949 chr4 191154276 + 155019859 155021813 L1MA5A 2387 - 25 1460 110629 18 74 58 17 0 1 12 7 6 17 28 1 15 15 12 19 1 0 5 1 0 26 1 0 48 1 0 14 1 10 40 1411 933 183 chain 133646 chr4 191154276 + 155024317 155025824 L1PA5 6144 - 6 1512 27290 59 3 1 540 0 1 905 chain 14123 chr4 191154276 + 155025824 155025985 L1PA5 6144 + 4459 4620 143248 161 chain 434884 chr4 191154276 + 155029641 155036110 L1PA6 6164 + 3 6162 9197 191 0 1 32 73 74 15 418 193 56 42 0 4 34 0 19 11 12 142 21 0 38 7 24 91 11 15 60 8 9 43 59 58 878 1 0 367 7 0 67 12 3 50 0 4 133 0 4 182 0 1 19 5 9 392 0 1 50 20 28 26 3 4 129 1 3 99 6 7 501 0 4 148 7 8 270 2 1 320 73 0 110 0 3 72 0 4 136 0 1 12 0 3 186 1 0 79 7 13 424 0 1 67 0 1 4 1 0 8 5 35 60 1 2 153 chain 495528 chr4 191154276 + 155065740 155071352 L1PA4 6152 - 9 6151 7097 37 4 1 23 3 1 1088 0 1 632 0 4 418 1 0 555 0 1 96 1 0 1943 0 1 197 0 1 143 0 4 372 0 525 99 chain 33517 chr4 191154276 + 155074460 155074898 MER57A1 433 + 0 433 78378 134 18 9 36 1 0 103 0 1 101 0 4 45 chain 7758 chr4 191154276 + 155075541 155075638 MER57A1 433 - 0 101 172557 45 0 4 52 chain 52892 chr4 191154276 + 155077591 155078199 L1PA5 6144 - 10 618 57083 137 1 0 44 5 6 421 chain 244423 chr4 191154276 + 155091174 155093883 L1PA4 6152 - 9 2720 16536 1150 0 1 1053 0 1 506 chain 46076 chr4 191154276 + 155107582 155108134 MER41A 554 + 1 554 61968 30 1 0 490 0 2 31 chain 33003 chr4 191154276 + 155126020 155126441 L1PA8A 6298 - 36 464 79211 215 0 7 159 3 1 5 0 2 39 chain 63860 chr4 191154276 + 155133299 155134000 L1PA4 6152 - 0 701 51075 701 chain 16927 chr4 191154276 + 155135908 155136108 L1PA4 6152 + 5953 6146 135776 18 7 0 175 chain 17517 chr4 191154276 + 155149252 155149543 L1MA5 2750 - 89 371 134218 16 1 0 13 2 1 20 1 0 13 30 26 10 1 0 164 1 0 19 chain 19013 chr4 191154276 + 155193541 155193896 THE1D 372 + 0 357 130079 53 10 1 48 5 6 58 0 6 6 72 77 85 1 0 17 chain 33989 chr4 191154276 + 155194130 155194747 L1PB1 5432 + 4847 5423 77630 256 1 2 9 13 0 23 1 0 7 1 0 14 5 1 9 2 0 52 19 17 44 1 0 14 13 0 8 4 8 13 27 22 24 1 0 14 8 7 13 1 0 10 1 0 9 chain 29193 chr4 191154276 + 155278471 155278858 MER83 447 + 4 404 88081 237 6 20 118 1 0 25 chain 51755 chr4 191154276 + 155306077 155306674 L1PA4 6152 - 0 598 57785 191 0 1 256 2 1 39 0 1 109 chain 25593 chr4 191154276 + 155311266 155311544 L1PA2 6032 - 0 278 101761 278 chain 4448 chr4 191154276 + 155323705 155323755 THE1B 368 - 65 115 201365 50 chain 8855 chr4 191154276 + 155347949 155348096 L1MA3 4352 + 4190 4328 166348 45 4 0 22 3 1 24 1 0 6 1 0 25 2 1 14 chain 3636 chr4 191154276 + 155374602 155374827 LTR16B1 483 + 65 318 213042 24 164 191 24 0 1 13 chain 8363 chr4 191154276 + 155378879 155379051 MER5A 189 - 27 189 169059 38 57 47 77 chain 24422 chr4 191154276 + 155415533 155415927 MSTA 426 - 0 426 107953 32 0 3 74 11 19 32 43 61 70 0 1 30 6 8 96 chain 3433 chr4 191154276 + 155513654 155513710 MER53 195 - 27 84 216521 35 7 8 14 chain 40958 chr4 191154276 + 155545590 155546142 MLT2A2 560 - 8 560 67965 35 12 1 98 0 11 80 0 1 146 1 0 155 13 13 12 chain 9626 chr4 191154276 + 155546682 155546826 MLT2A2 560 + 418 552 162466 41 1 2 55 12 1 35 chain 34235 chr4 191154276 + 155557731 155558153 L1PA8A 6298 + 5866 6290 77299 280 1 3 141 chain 271863 chr4 191154276 + 155568724 155572452 L1PA10 4194 + 175 3891 15092 13 2 0 9 34 26 9 2 0 9 1 0 9 1 0 18 4 3 16 1 0 5 39 14 7 1 0 22 2 0 21 56 48 84 4 2 249 0 8 193 7 12 40 23 0 688 14 15 28 0 1 97 0 1 8 0 4 205 0 28 155 0 4 21 1 5 114 0 1 263 10 8 25 0 3 8 6 5 88 10 12 162 0 4 18 8 7 154 0 1 211 0 6 30 0 1 4 1 0 189 4 6 195 10 5 40 1 0 79 chain 19625 chr4 191154276 + 155581574 155581829 AluSg4 309 + 35 289 128323 167 12 11 76 chain 137720 chr4 191154276 + 155582848 155584424 L1PA5 6144 + 4558 6144 26524 265 5 8 144 0 1 321 0 4 39 0 1 271 1 2 530 chain 6522 chr4 191154276 + 155588517 155588596 MER4A1 472 + 0 79 181072 79 chain 58667 chr4 191154276 + 155627032 155627737 L1PA6 6164 + 5465 6162 53600 336 12 3 255 6 7 96 chain 3704 chr4 191154276 + 155633305 155633359 MER53 195 - 31 84 211886 40 3 2 11 chain 406252 chr4 191154276 + 155692934 155697623 L1PA5 6144 - 9 4760 9903 270 1 0 59 0 1 82 0 2 431 8 11 86 0 1 150 1 30 473 0 3 185 0 4 5 0 1 240 0 1 148 0 2 208 0 1 379 12 13 517 0 1 448 0 4 220 0 9 189 1 0 489 0 1 87 chain 273810 chr4 191154276 + 155708356 155711508 L1PA5 6144 - 1 3187 14984 10 1 3 22 0 8 35 0 8 763 2 0 556 1 4 198 0 1 161 7 11 20 1 5 346 0 2 718 0 4 311 chain 4271 chr4 191154276 + 155711535 155711619 U2 167 + 86 164 203605 44 7 0 7 10 11 16 chain 22050 chr4 191154276 + 155724960 155725374 MSTA 426 + 0 416 120016 24 2 3 174 14 12 34 87 90 79 chain 33091 chr4 191154276 + 155750117 155750563 L1PA8A 6298 + 5830 6291 79067 30 0 3 225 0 4 83 10 11 51 6 9 14 0 4 27 chain 123844 chr4 191154276 + 155758031 155759612 HERVK22-int 3844 - 1094 2692 29754 80 0 9 715 0 1 379 1 7 67 0 1 4 3 2 142 7 8 183 chain 46237 chr4 191154276 + 155769247 155769810 LTR19B 566 - 0 566 61821 53 5 6 209 1 2 124 0 1 171 chain 36954 chr4 191154276 + 155769812 155770292 THE1B-int 1605 + 1118 1605 73578 129 0 1 60 4 3 23 2 9 262 chain 18810 chr4 191154276 + 155770292 155770635 THE1B 368 + 0 368 130649 37 3 18 46 9 19 26 13 4 24 1 0 18 49 59 117 chain 6685 chr4 191154276 + 155783261 155783341 MSTA 426 - 291 371 179786 80 chain 78863 chr4 191154276 + 155794901 155795975 MER11B 1079 - 5 1079 44120 24 1 0 74 1 0 57 0 1 29 4 5 16 0 1 41 0 2 4 1 0 44 8 10 25 10 0 296 19 20 65 3 6 13 1 3 338 chain 2911 chr4 191154276 + 155796965 155796999 MLT1J1-int 962 + 574 608 226862 34 chain 465284 chr4 191154276 + 155813472 155819284 L1PA8 5853 + 50 5849 8210 22 2 0 10 1 0 6 53 30 163 26 47 268 0 4 387 6 7 67 11 12 72 2 1 321 0 1 133 1 0 1095 0 2 190 1 0 333 1 0 160 18 6 661 1 4 136 10 8 592 0 1 79 0 3 134 5 4 84 0 1 470 1 0 44 2 0 71 1 0 14 1 0 67 2 1 88 chain 81798 chr4 191154276 + 155828443 155829404 LTR13A 966 - 0 966 42844 200 1 0 82 10 5 241 0 11 273 1 0 92 0 1 61 chain 26643 chr4 191154276 + 155839480 155839883 LTR7 482 - 0 482 97500 158 0 10 19 1 32 11 1 0 5 22 23 100 15 53 71 chain 280888 chr4 191154276 + 155841698 155845304 HERVH-int 3825 - 0 3825 14588 264 0 13 181 37 247 740 0 1 280 22 27 292 0 1 309 1 0 13 0 2 25 9 0 200 16 1 388 0 3 59 0 1 79 2 1 47 23 20 13 2 14 24 1 0 10 1 0 10 0 3 22 1 0 182 0 1 19 1 0 333 chain 22139 chr4 191154276 + 155845314 155845715 LTR7 482 - 8 482 119622 41 16 18 48 1 2 73 0 31 36 0 1 41 0 51 17 77 64 51 chain 31430 chr4 191154276 + 155851492 155851883 LTR3 431 + 21 416 81767 53 0 2 174 0 1 93 0 1 71 chain 28986 chr4 191154276 + 155889336 155889640 AluYa8 305 - 1 305 89062 304 chain 15036 chr4 191154276 + 155899706 155899886 L1PA5 6144 - 0 180 141218 180 chain 25458 chr4 191154276 + 155918209 155918581 THE1D 372 - 0 372 102422 118 10 16 43 9 7 23 0 2 111 8 0 37 0 2 13 chain 259100 chr4 191154276 + 155939896 155942869 L1PA5 6144 - 2973 5948 15748 865 1 0 932 1 0 144 0 1 477 3 5 357 0 1 193 chain 258693 chr4 191154276 + 155942870 155945798 L1PA5 6144 + 3191 6125 15768 975 0 2 80 5 0 724 1 2 322 0 8 821 chain 24779 chr4 191154276 + 155952887 155953156 AluYa5 310 - 6 274 106005 128 1 0 140 chain 117209 chr4 191154276 + 155965273 155966676 LTR12C 1709 + 0 1709 32054 266 0 1 543 0 200 64 0 2 35 1 0 5 3 1 107 0 4 168 0 102 211 chain 20114 chr4 191154276 + 155975354 155975752 L1PB1 5432 + 5052 5416 126786 51 1 2 9 3 0 24 1 0 6 20 15 10 2 0 49 8 7 11 1 0 44 1 0 16 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 19559 chr4 191154276 + 155989533 155989773 L1PA5 6144 + 5273 5518 128494 43 13 16 100 0 2 84 chain 55362 chr4 191154276 + 155989773 155990398 L1PA5 6144 + 5519 6144 55483 625 chain 9842 chr4 191154276 + 155997245 155997382 L1PB2 3958 - 120 254 161381 63 2 1 24 2 0 46 chain 4423 chr4 191154276 + 156008042 156008136 MER8 282 + 0 137 201661 49 31 74 14 chain 23998 chr4 191154276 + 156014366 156014639 L1PA4 6152 - 9 289 110341 130 0 7 143 chain 39028 chr4 191154276 + 156029429 156029880 LTR7 482 - 0 482 70697 204 1 32 246 chain 311920 chr4 191154276 + 156031132 156034936 HERVH-int 3825 - 0 3825 12924 178 0 1 55 0 2 244 0 15 226 0 19 223 5 0 405 1 0 358 8 13 86 0 4 280 4 31 344 1 0 558 5 4 50 1 0 9 20 0 23 45 0 11 2 0 13 4 42 13 37 26 12 1 0 10 1 0 24 0 1 4 1 0 6 1 0 535 chain 39049 chr4 191154276 + 156034938 156035389 LTR7 482 - 0 482 70666 187 0 31 264 chain 14427 chr4 191154276 + 156048411 156048750 L1MA4 2864 - 60 358 143127 38 5 0 18 65 41 5 1 0 9 10 1 18 36 33 125 0 1 9 chain 13534 chr4 191154276 + 156048848 156049008 L1PA4 6152 - 12 165 146230 129 7 0 24 chain 19619 chr4 191154276 + 156060613 156060869 L1PA7 6471 - 16 276 128336 50 2 1 94 0 4 22 8 9 80 chain 23455 chr4 191154276 + 156115709 156116145 L1PA15 4387 - 40 478 113348 19 7 2 10 2 0 43 68 65 72 11 16 16 1 0 172 1 0 7 0 9 7 chain 124551 chr4 191154276 + 156120441 156122171 L1PA8 5853 + 4116 5853 29525 72 0 2 150 2 0 106 0 1 112 4 14 154 5 0 18 0 1 94 1 12 60 18 18 75 0 1 4 2 0 56 0 1 20 3 0 27 4 0 102 0 1 24 0 2 319 1 0 46 2 0 70 26 24 38 2 1 19 1 0 93 chain 2549 chr4 191154276 + 156126203 156126248 MER8 282 - 235 281 232491 24 5 6 16 chain 46042 chr4 191154276 + 156157805 156158473 LTR12 884 - 0 806 61998 96 30 60 103 23 0 231 17 15 38 0 133 130 chain 13253 chr4 191154276 + 156160612 156160761 L1PA5 6144 + 5992 6141 147273 149 chain 56741 chr4 191154276 + 156168038 156168723 THE1A-int 1579 - 7 689 54690 102 4 0 121 0 1 458 chain 2957 chr4 191154276 + 156176902 156176937 L1MB1 2102 + 1972 2007 225921 35 chain 3379 chr4 191154276 + 156179859 156179922 Charlie1a 1436 - 421 485 217524 16 9 10 38 chain 357646 chr4 191154276 + 156203001 156206858 L1PA2 6032 - 2 3860 11412 2569 0 1 1288 chain 37845 chr4 191154276 + 156233050 156233556 LTR10F 562 - 1 562 72347 124 0 2 142 7 1 27 0 55 10 0 11 20 7 0 169 chain 3601 chr4 191154276 + 156240630 156240672 MER67D 511 - 26 68 213634 42 chain 20130 chr4 191154276 + 156259922 156260281 THE1D 372 + 0 368 126749 53 0 3 94 89 96 94 1 0 28 chain 3788 chr4 191154276 + 156263646 156263762 L1MB2 1706 - 12 124 210539 35 52 49 12 1 0 16 chain 167022 chr4 191154276 + 156315756 156318354 L1PA6 6164 - 2 1966 22390 8 7 0 17 0 1 143 5 0 200 312 0 484 0 1 12 0 4 279 320 0 502 0 4 309 chain 57392 chr4 191154276 + 156342438 156343143 LTR30 714 + 0 714 54291 151 0 2 296 11 12 104 0 6 143 chain 23682 chr4 191154276 + 156343584 156343879 AluY 311 + 0 292 112139 24 10 6 5 0 1 256 chain 53976 chr4 191154276 + 156345539 156346155 SVA_B 1603 - 0 734 56382 6 2 0 553 0 37 31 0 83 24 chain 12877 chr4 191154276 + 156348065 156348458 LTR22B 500 + 3 404 148719 4 1 0 39 4 3 28 4 5 10 1 0 47 0 1 5 115 124 33 1 0 35 47 48 19 chain 5950 chr4 191154276 + 156383887 156383959 tRNA-Gln-CAA_ 72 + 0 72 185681 72 chain 7307 chr4 191154276 + 156396803 156396885 L1PA8A 6298 - 7 89 175392 82 chain 28535 chr4 191154276 + 156419388 156419686 AluYd8 298 + 0 298 91027 298 chain 23016 chr4 191154276 + 156457712 156458048 THE1B 368 + 1 342 115548 121 1 2 45 1 0 29 0 3 9 1 5 17 0 2 6 4 0 66 1 0 4 1 2 30 chain 4285 chr4 191154276 + 156463705 156463782 MADE1 96 - 7 96 203410 23 0 1 5 13 24 36 chain 6490 chr4 191154276 + 156466118 156466324 MER45C 884 + 95 312 181333 65 106 75 11 0 42 24 chain 271678 chr4 191154276 + 156475655 156479213 L1PB1 5432 + 1520 5103 15101 451 0 1 296 0 3 146 1 5 155 0 5 348 0 4 72 0 1 5 1 0 570 0 1 137 1 4 268 1 0 490 1 2 142 3 0 86 1 2 11 6 10 77 5 3 83 0 2 91 0 3 52 1 0 57 chain 23754 chr4 191154276 + 156482514 156482803 AluSg4 309 - 5 298 111753 37 6 10 246 chain 119133 chr4 191154276 + 156494605 156496210 L1PA8 5853 + 4096 5853 31364 273 0 1 182 0 1 59 0 4 46 2 3 58 1 0 110 5 6 170 0 2 72 19 166 94 0 1 50 0 2 168 1 0 44 2 0 70 26 24 38 2 1 19 2 1 92 chain 3853 chr4 191154276 + 156509279 156509331 LTR16B 463 + 274 325 209606 38 1 0 13 chain 38425 chr4 191154276 + 156522414 156523173 L1PB1 5432 - 8 682 71547 6 1 0 13 3 2 11 1 0 11 1 0 11 1 0 24 2 0 14 1 0 5 2 0 19 25 12 14 31 31 14 1 0 16 2 1 50 20 14 10 1 0 33 80 30 88 10 0 189 0 7 49 chain 20173 chr4 191154276 + 156541439 156541669 L1PA5 6144 + 5902 6132 126606 230 chain 12494 chr4 191154276 + 156583398 156583693 THE1B 368 - 62 368 150269 40 1 0 23 2 1 12 33 39 22 1 0 46 13 14 23 44 51 35 chain 25359 chr4 191154276 + 156609093 156609406 AluY 311 + 0 299 102890 126 4 0 151 0 3 5 13 0 14 chain 2992 chr4 191154276 + 156703844 156704015 MLT1G3 592 + 143 311 225211 28 119 116 24 chain 19577 chr4 191154276 + 156725407 156725680 L1PA8 5853 + 5586 5853 128440 24 2 0 72 1 0 5 9 8 40 7 6 19 1 0 93 chain 191330 chr4 191154276 + 156768342 156771265 MER4-int 2692 + 73 2680 19930 26 2 0 15 2 1 5 4 0 159 363 44 273 0 1 118 1 2 8 6 1 38 0 4 169 0 1 62 6 8 97 1 0 281 4 20 28 1 0 31 2 3 19 0 14 250 3 5 134 1 0 223 38 4 158 0 2 135 1 0 51 1 0 101 0 10 106 chain 4877 chr4 191154276 + 156799519 156799573 THE1B 368 - 314 368 196528 54 chain 53470 chr4 191154276 + 156799585 156800304 THE1B-int 1605 - 12 735 56709 114 1 0 109 0 2 103 0 1 10 0 5 6 5 0 33 1 0 27 5 6 156 8 10 141 chain 27021 chr4 191154276 + 156800336 156800641 L1PA3long 6157 - 1 307 96214 141 0 1 164 chain 30622 chr4 191154276 + 156813100 156813488 L1PA7 6471 - 4 389 83164 6 3 0 379 chain 443300 chr4 191154276 + 156813490 156818557 L1PA5 6144 + 731 6141 8945 235 4 348 861 0 2 2135 1 0 1000 0 1 816 3 0 12 chain 29315 chr4 191154276 + 156818648 156818958 AluYb8 318 - 8 318 87466 310 chain 73877 chr4 191154276 + 156819246 156820340 MER11A 1151 - 0 1151 46575 230 0 1 29 23 5 24 8 15 11 25 1 42 1 2 101 5 7 32 0 3 110 5 0 94 0 1 115 0 2 32 9 5 45 0 1 15 1 0 50 8 0 24 10 109 45 chain 41415 chr4 191154276 + 156850030 156850541 MER9a3 513 + 2 513 67400 20 0 1 132 2 1 48 13 12 218 0 1 78 chain 27069 chr4 191154276 + 156854240 156854580 THE1A 353 + 0 341 96040 110 1 0 185 0 2 44 chain 123608 chr4 191154276 + 156854590 156856132 THE1A-int 1579 + 0 1579 29839 84 2 1 114 3 0 43 0 1 195 2 1 335 0 23 210 3 19 143 0 1 112 0 1 296 chain 27969 chr4 191154276 + 156856132 156856485 THE1A 353 + 0 353 93113 73 0 1 26 1 0 9 2 1 69 0 1 173 chain 12863 chr4 191154276 + 156878721 156878898 L1PB2 3958 + 3664 3838 148784 6 0 1 8 1 0 70 2 0 25 2 1 63 chain 1514 chr4 191154276 + 156889090 156889211 THE1D 372 + 0 122 144785 111 0 1 10 chain 36574 chr4 191154276 + 156889268 156889763 LTR12F 595 - 0 595 74133 357 10 135 26 25 0 77 chain 1026 chr4 191154276 + 156890122 156890204 THE1D 372 + 291 372 144785 49 1 0 32 chain 36628 chr4 191154276 + 156923080 156923624 LTR12F 595 + 0 595 74060 26 1 0 10 2 0 67 6 1 26 21 0 13 3 1 5 0 90 113 14 6 4 1 0 160 1 2 71 chain 25652 chr4 191154276 + 156938445 156938748 AluSp 311 + 0 306 101484 107 0 1 56 0 2 140 chain 3352 chr4 191154276 + 156940293 156940331 MER34C_ 573 + 70 108 218024 38 chain 12254 chr4 191154276 + 156962333 156962670 L1PB1 5432 + 5117 5420 151188 21 1 0 9 1 0 11 5 1 7 2 0 53 4 2 11 5 4 28 2 0 16 1 0 16 3 0 6 16 6 14 53 48 22 9 8 4 1 0 16 chain 50257 chr4 191154276 + 156964509 156965091 L1PA7 6471 - 14 598 58821 244 0 2 338 chain 12554 chr4 191154276 + 156966584 156966894 MER57B2 428 + 7 404 150025 17 0 34 70 12 37 49 17 19 17 1 2 14 36 60 12 31 32 34 chain 102956 chr4 191154276 + 156969521 156970619 L1HS 6032 - 576 1674 36003 1098 chain 54665 chr4 191154276 + 156970619 156971200 L1HS 6032 + 5451 6032 55927 581 chain 33830 chr4 191154276 + 156984617 156985076 LTR15 485 - 7 485 77891 21 0 1 14 2 0 6 1 0 47 6 20 90 0 4 124 0 2 76 8 9 64 chain 27464 chr4 191154276 + 157002053 157002343 AluYf4 310 - 0 290 94767 290 chain 275324 chr4 191154276 + 157026328 157030046 HERVH-int 3825 - 0 3825 14908 223 6 7 257 148 362 462 7 8 216 0 2 148 0 3 112 0 10 299 4 31 459 14 0 447 1 0 70 42 0 53 108 0 20 0 17 13 38 27 9 1 0 24 0 1 4 1 0 11 9 8 189 1 0 110 0 11 212 chain 24408 chr4 191154276 + 157030048 157030456 LTR7 482 - 0 482 108036 49 12 14 52 1 2 70 5 6 11 1 32 21 0 1 109 36 74 41 chain 8186 chr4 191154276 + 157061284 157061405 L1PA15 4387 + 4152 4267 170042 33 1 0 20 4 0 11 2 1 50 chain 14455 chr4 191154276 + 157071036 157071191 L1PA4 6152 + 5991 6146 143033 155 chain 5669 chr4 191154276 + 157077096 157077170 MER51B 395 + 238 312 188404 7 1 0 6 0 1 60 chain 89838 chr4 191154276 + 157126430 157127635 THE1D-int 1627 - 432 1627 39712 71 9 10 162 8 4 86 3 4 154 13 7 20 4 5 136 2 0 499 1 0 37 chain 21811 chr4 191154276 + 157147541 157147808 AluY 311 + 35 311 120974 97 0 1 74 1 0 61 4 13 30 chain 40298 chr4 191154276 + 157154344 157154834 L1PA7 6471 - 9 500 68881 8 0 2 431 1 0 50 chain 38061 chr4 191154276 + 157154834 157155294 L1PA7 6471 + 5506 5979 72043 110 0 4 184 0 8 161 0 1 5 chain 36438 chr4 191154276 + 157183352 157183817 MER4A1 472 + 0 471 74320 173 7 13 285 chain 550587 chr4 191154276 + 157205718 157211751 L1PA2 6032 - 3 6017 1366 796 0 1 573 22 0 1610 3 4 2834 0 1 195 chain 73965 chr4 191154276 + 157225913 157226870 LTR5_Hs 974 - 0 974 46535 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 15 0 3 97 chain 73471 chr4 191154276 + 157238090 157239052 MER11A 1151 - 18 1151 46802 152 6 0 60 0 1 17 0 82 107 2 1 28 0 2 144 0 1 94 0 1 110 5 0 37 8 4 56 0 2 4 1 0 64 0 99 67 chain 22079 chr4 191154276 + 157273348 157273629 AluSp 311 + 1 286 119888 109 1 2 25 2 5 144 chain 538100 chr4 191154276 + 157288421 157294444 L1PA3long 6157 + 0 6157 3136 153 0 1 188 0 1 141 4 0 293 1 129 180 0 3 312 0 5 1769 1 2 241 4 0 1710 0 1 694 0 1 190 0 1 142 chain 19357 chr4 191154276 + 157296712 157296942 L1PA7 6471 + 6241 6470 129054 216 1 0 13 chain 85758 chr4 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2880 6 0 4 131 2 1 79 chain 30095 chr4 191154276 + 157413048 157413453 MLT2A1 477 + 2 460 84503 166 1 5 209 14 63 15 chain 396462 chr4 191154276 + 157427717 157433135 L1PA8A 6298 + 1137 6290 10220 85 8 2 144 13 25 85 0 1 129 22 22 247 0 16 92 0 2 523 7 0 15 23 20 213 0 4 41 0 1 166 0 2 230 1 0 154 6 7 80 0 5 32 2 3 213 7 1 8 0 2 91 0 1 172 4 3 169 309 0 711 5 8 222 0 1 142 0 1 172 0 5 34 0 1 49 26 27 64 0 1 109 2 10 62 0 1 306 1 0 114 1 0 107 chain 82847 chr4 191154276 + 157472902 157474086 L1PB 1623 - 37 1209 42398 11 2 0 22 50 28 10 1 0 13 5 1 13 3 0 4 1 0 30 2 1 7 1 0 139 3 1 4 1 0 60 7 13 141 6 9 334 0 1 76 0 17 166 1 0 71 chain 12304 chr4 191154276 + 157497742 157497878 L1PA5 6144 - 9 145 150997 136 chain 38995 chr4 191154276 + 157521347 157521798 LTR7 482 + 0 482 70751 230 0 31 221 chain 297384 chr4 191154276 + 157521800 157525475 HERVH-int 3825 + 0 3825 13561 49 1 3 129 6 8 23 0 11 309 69 0 38 1 0 10 1 0 23 1 53 41 1 0 28 89 5 49 1 0 490 0 1 413 6 33 359 0 1 224 1 2 818 8 218 487 chain 2884 chr4 191154276 + 157522530 157522606 HERVH-int 3825 + 663 698 200622 16 41 0 19 chain 40527 chr4 191154276 + 157526735 157527186 LTR7 482 + 0 482 68552 264 0 31 187 chain 4039 chr4 191154276 + 157527459 157527510 MADE1 96 + 45 96 206793 51 chain 15441 chr4 191154276 + 157534757 157534932 L1PA5 6144 + 5961 6136 140074 175 chain 49579 chr4 191154276 + 157572567 157573186 L1PA8A 6298 + 5656 6284 59338 610 0 9 9 chain 26423 chr4 191154276 + 157603484 157603778 AluY 311 + 4 298 98328 294 chain 13357 chr4 191154276 + 157624633 157624820 MER30 238 + 31 238 146855 74 4 0 6 0 27 57 3 0 43 chain 54460 chr4 191154276 + 157627629 157628238 L1P1 4361 + 2548 3158 56062 507 0 1 102 chain 6160 chr4 191154276 + 157707808 157707884 MER53 195 - 6 82 183888 76 chain 25342 chr4 191154276 + 157759988 157760435 LTR14A 344 - 0 344 103010 72 0 1 148 42 11 59 41 0 7 32 0 46 chain 17791 chr4 191154276 + 157760436 157760663 THE1C 375 + 100 335 133441 7 0 1 27 0 4 64 0 3 129 chain 25111 chr4 191154276 + 157772820 157773109 AluYd8 298 + 7 296 104225 289 chain 33442 chr4 191154276 + 157787110 157787493 L1PA4 6152 - 1 384 78501 383 chain 8521 chr4 191154276 + 157798256 157798456 L1MA3 4352 - 0 176 168183 5 0 1 15 7 3 12 1 0 28 1 0 5 1 0 13 18 6 6 2 0 28 4 0 7 2 0 19 0 2 26 chain 3627 chr4 191154276 + 157847618 157847660 LTR1 825 + 91 133 213199 42 chain 49269 chr4 191154276 + 157853506 157854054 L1PA4 6152 + 5599 6152 59535 542 0 5 6 chain 17461 chr4 191154276 + 157854783 157855165 THE1D 372 + 0 372 134356 96 149 145 106 6 0 25 chain 12094 chr4 191154276 + 157921861 157921997 L1PA2 6032 - 0 142 151817 17 0 6 119 chain 34831 chr4 191154276 + 157934925 157935356 MER57A1 433 - 1 433 76433 149 0 1 282 chain 69676 chr4 191154276 + 157950711 157951525 L1PA7 6471 - 1527 2350 48536 108 0 1 161 0 8 545 chain 129530 chr4 191154276 + 157951528 157953064 L1PA7 6471 + 4925 6464 28201 59 0 1 601 4 0 29 1 5 233 0 1 443 1 2 165 chain 26290 chr4 191154276 + 157954296 157954595 AluYk4 311 + 8 307 98862 299 chain 4366 chr4 191154276 + 157966845 157966901 MamGypLTR3 363 + 192 248 202387 56 chain 7898 chr4 191154276 + 157974270 157974358 L1PA5 6144 - 167 255 171661 88 chain 2838 chr4 191154276 + 157986055 157986086 MLT1B 390 + 355 386 228107 31 chain 23810 chr4 191154276 + 158014625 158014930 AluSc 308 + 15 303 111414 42 17 1 197 1 0 48 chain 16135 chr4 191154276 + 158024347 158024609 MER49 923 - 357 620 137950 33 1 0 32 1 0 87 43 46 65 chain 65009 chr4 191154276 + 158040821 158041545 L1PA3long 6157 + 5432 6157 50572 114 0 1 610 chain 3038 chr4 191154276 + 158072537 158072569 L1P1 4361 - 1555 1587 224223 32 chain 515814 chr4 191154276 + 158078510 158084602 L1PA5 6144 - 16 6144 5593 322 0 1 260 0 1 75 0 2 167 0 6 706 0 1 569 1 0 847 0 1 140 0 1 678 0 1 30 5 6 1144 11 2 237 0 4 330 1 0 33 6 7 364 27 40 11 8 22 120 chain 538845 chr4 191154276 + 158096060 158102067 L1PA3long 6157 - 15 6157 3018 3318 0 6 454 0 1 1459 0 128 34 1 0 589 1 2 151 chain 17242 chr4 191154276 + 158122489 158122713 L1PA6 6164 - 2 225 134948 9 2 0 60 1 2 152 chain 44118 chr4 191154276 + 158130103 158130748 LTR12D 1347 - 0 942 64060 61 0 133 71 1 0 33 1 0 27 27 0 37 1 0 117 6 14 143 0 59 14 23 0 54 0 150 29 chain 35488 chr4 191154276 + 158161857 158162254 L1PA2 6032 - 0 394 75570 14 3 0 380 chain 7601 chr4 191154276 + 158176782 158176879 L1P4 1494 + 1294 1390 173535 56 1 0 40 chain 83458 chr4 191154276 + 158178963 158180023 MER11B 1079 + 0 1079 42135 316 1 18 203 0 1 4 6 5 31 1 0 139 1 2 51 0 2 185 0 1 84 9 8 29 chain 163012 chr4 191154276 + 158195522 158197350 L1PA4 6152 - 0 1835 22938 6 0 2 1517 0 5 305 chain 23306 chr4 191154276 + 158234981 158235306 Tigger2a 444 - 109 441 114173 25 1 3 105 0 5 79 3 0 10 7 10 95 chain 22608 chr4 191154276 + 158274539 158274839 AluY 311 + 0 287 117549 4 1 0 121 6 1 110 10 3 48 chain 29799 chr4 191154276 + 158301208 158301526 AluYb8 318 - 0 318 85438 318 chain 55341 chr4 191154276 + 158306477 158307122 L1PA6 6164 - 4 649 55494 645 chain 4531 chr4 191154276 + 158324431 158324482 THE1C 375 - 275 326 200442 51 chain 268187 chr4 191154276 + 158325880 158329345 HERVL-int 5654 - 5 3507 15277 156 1 0 261 1 13 989 26 36 279 0 1 162 0 1 81 15 26 71 0 1 140 0 5 248 1 2 14 5 0 632 0 1 259 2 1 42 4 5 76 chain 6853 chr4 191154276 + 158331621 158331723 MADE1 96 + 3 95 178552 44 12 2 46 chain 33636 chr4 191154276 + 158338165 158338532 L1PA3long 6157 - 2240 2607 78047 367 chain 204665 chr4 191154276 + 158338532 158340776 L1PA3long 6157 + 3913 6157 18878 852 0 1 4 1 0 1387 chain 11610 chr4 191154276 + 158350773 158351097 MLT1B 390 - 32 331 153852 26 10 11 4 1 0 62 139 114 82 chain 28236 chr4 191154276 + 158372372 158372676 AluYb8 318 - 15 318 92171 198 1 0 105 chain 138268 chr4 191154276 + 158375624 158377332 L1PA7 6471 - 3 1730 26440 10 5 1 136 2 0 19 8 4 167 1 0 337 0 1 169 4 0 21 0 4 43 0 28 195 9 10 98 0 1 4 1 0 97 0 1 143 1 0 238 chain 41961 chr4 191154276 + 158380204 158380700 L1PA7 6471 + 5973 6470 66672 345 1 2 150 chain 4122 chr4 191154276 + 158397013 158397067 MER53 195 - 23 78 205624 39 0 1 15 chain 151256 chr4 191154276 + 158405485 158407624 L1PA7 6471 - 3 1845 24440 330 0 1 32 1 0 478 1 5 673 1 0 131 0 1 80 301 0 111 chain 85294 chr4 191154276 + 158416618 158417550 L1PA2 6032 - 3 935 41420 932 chain 113673 chr4 191154276 + 158417550 158418812 L1PA2 6032 + 3854 5119 33181 642 0 3 620 chain 6621 chr4 191154276 + 158444522 158444725 LTR27 711 - 270 473 180298 18 5 8 20 95 92 65 chain 5548 chr4 191154276 + 158458046 158458162 MSTA-int 1630 + 362 481 189588 59 35 38 22 chain 15731 chr4 191154276 + 158458162 158458516 THE1B 368 - 0 368 139171 54 9 8 66 0 2 6 1 0 18 9 16 25 5 4 29 85 93 47 chain 15098 chr4 191154276 + 158461289 158461480 THE1A 353 - 24 211 141042 75 6 2 110 chain 7316 chr4 191154276 + 158464835 158464927 L1PB4 2604 - 56 148 175323 92 chain 14998 chr4 191154276 + 158470785 158470967 L1PA4 6152 + 5963 6146 141322 177 0 1 5 chain 7469 chr4 191154276 + 158478498 158478727 MER74C 455 + 199 455 174355 41 68 71 12 33 51 32 6 12 37 chain 3862 chr4 191154276 + 158489561 158489608 MER97c 529 + 76 123 209433 47 chain 25764 chr4 191154276 + 158502934 158503220 AluYk4 311 - 5 291 101027 286 chain 22437 chr4 191154276 + 158505224 158505558 THE1A 353 - 0 337 118315 157 20 21 11 0 1 69 1 0 39 9 11 28 chain 5831 chr4 191154276 + 158509304 158509384 MADE1 96 - 0 96 186858 47 1 17 32 chain 33911 chr4 191154276 + 158516755 158517193 L1PA7 6471 + 6010 6438 77754 268 19 9 36 0 1 4 1 0 110 chain 28232 chr4 191154276 + 158517736 158518152 LTR7 482 - 0 482 92182 57 0 1 118 15 42 10 1 0 20 9 10 109 8 46 69 chain 64436 chr4 191154276 + 158543374 158544118 L1PA4 6152 - 9 752 50785 143 8 8 94 1 0 498 chain 199613 chr4 191154276 + 158544118 158546360 L1PA4 6152 + 3131 5373 19237 2129 0 1 47 1 0 65 chain 57051 chr4 191154276 + 158555604 158556612 L1M1 2793 + 661 1667 54499 41 58 42 14 47 53 20 2 0 8 1 0 43 29 25 87 7 9 175 1 0 64 11 7 17 14 7 47 7 29 10 12 13 174 0 3 63 2 1 54 chain 128242 chr4 191154276 + 158556972 158558900 SVA_F 1814 - 0 1479 28508 540 127 0 85 53 0 61 0 3 117 277 0 18 0 1 23 3 18 67 0 1 24 43 31 490 chain 2735 chr4 191154276 + 158557529 158557572 SVA_F 1814 - 733 776 150384 43 chain 5253 chr4 191154276 + 158557572 158557639 SVA_F 1814 - 649 716 89996 67 chain 4156 chr4 191154276 + 158557724 158557777 SVA_F 1814 - 801 850 89996 2 1 0 17 10 7 23 chain 12358 chr4 191154276 + 158557974 158558167 SVA_F 1814 - 600 742 150808 107 50 0 17 1 0 18 chain 2251 chr4 191154276 + 158558081 158558105 SVA_F 1814 - 897 921 235953 24 chain 5286 chr4 191154276 + 158558168 158558227 SVA_F 1814 - 566 625 192150 59 chain 46168 chr4 191154276 + 158562981 158563493 L1PA3long 6157 - 0 512 61877 512 chain 3572 chr4 191154276 + 158592704 158592882 MER96B 391 + 161 320 214110 18 69 47 19 24 25 20 0 1 4 1 0 8 2 4 13 chain 505167 chr4 191154276 + 158612656 158618578 L1PA4 6152 + 6 6152 6524 193 1 2 11 5 6 518 1 0 261 0 1 2951 0 1 139 26 3 32 39 269 219 8 0 23 1 0 29 0 1 796 1 0 172 1 19 489 0 5 6 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4 76 4 6 305 0 1 194 4 7 670 7 8 136 0 3 29 0 1 151 3 1 446 12 16 52 16 13 241 4 0 6 0 4 210 11 12 378 0 1 110 1 3 746 0 5 207 1 0 483 11 32 143 14 14 20 1 76 55 7 17 33 10 11 19 155 345 37 31 35 30 11 10 13 3 8 175 chain 8780 chr4 191154276 + 158689165 158689265 HY3 101 - 0 101 166762 88 0 1 12 chain 48881 chr4 191154276 + 158692516 158693134 L1PA8 5853 + 5240 5853 59821 324 1 0 46 2 0 66 2 3 9 1 0 52 2 1 19 1 0 93 chain 7070 chr4 191154276 + 158699650 158699740 L1P1 4361 - 33 121 176941 23 1 0 58 1 0 7 chain 25499 chr4 191154276 + 158702089 158702444 MLT2A1 477 - 92 476 102225 132 17 49 30 1 0 3 3 0 79 1 2 89 chain 20371 chr4 191154276 + 158706390 158706774 THE1D 372 - 0 372 125995 148 62 64 29 16 0 22 7 8 38 8 9 54 chain 83055 chr4 191154276 + 158722283 158723535 L1PB2 3958 - 173 1412 42312 10 2 1 21 2 0 71 2 1 63 1 0 23 1 0 4 0 1 36 12 11 47 0 1 43 4 0 14 2 0 60 7 1 16 1 0 37 7 0 10 7 5 24 0 1 20 5 10 30 7 11 248 0 2 39 1 0 170 9 8 160 3 7 33 chain 25781 chr4 191154276 + 158729039 158729324 L1PA2 6032 - 1 286 100958 285 chain 76911 chr4 191154276 + 158742984 158744125 LTR12D 1347 + 0 1347 45021 180 4 0 7 77 86 8 4 0 17 2 38 26 0 23 151 0 31 17 41 0 24 0 41 45 0 17 201 1 2 71 0 97 265 chain 2076 chr4 191154276 + 158743477 158743500 LTR12D 1347 + 512 535 179188 23 chain 399402 chr4 191154276 + 158745826 158751951 L1PB1 5432 + 24 5404 10123 382 2 0 70 284 0 69 1 2 61 1 2 244 0 1 123 1 0 273 18 19 24 325 20 90 11 0 203 7 8 219 21 1 132 0 3 42 0 1 234 1 0 248 3 0 285 4 5 48 2 1 28 0 3 66 0 4 259 0 2 342 8 10 180 1 5 101 0 2 53 0 18 55 1 0 64 1 0 140 1 5 115 8 15 52 16 13 109 0 4 9 5 10 30 0 1 99 3 0 23 0 1 152 1 0 99 0 1 110 0 2 85 150 14 23 1 0 9 1 0 4 38 19 49 1 0 18 1 0 44 1 0 15 23 12 19 8 5 14 2 0 24 1 0 20 2 1 13 chain 30032 chr4 191154276 + 158755191 158755506 AluYb8 318 - 3 318 84712 315 chain 3977 chr4 191154276 + 158763176 158763221 MADE1 96 - 51 96 207724 45 chain 5357 chr4 191154276 + 158766959 158767027 L1PB1 5432 + 4655 4726 191462 7 0 3 61 chain 18692 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71 2 0 62 1 0 46 0 1 9 2 0 5 2 0 47 9 5 20 2 1 13 0 4 11 chain 58916 chr4 191154276 + 158969938 158970635 L1PA7 6471 + 5774 6470 53445 692 1 0 4 chain 17013 chr4 191154276 + 158990277 158990478 L1PA7 6471 - 5 206 135557 201 chain 557982 chr4 191154276 + 159005392 159011415 L1PA2 6032 - 2 6025 503 6023 chain 36190 chr4 191154276 + 159017092 159017513 L1PA5 6144 - 0 420 74641 11 2 1 408 chain 24283 chr4 191154276 + 159019364 159019656 L1PA5 6144 + 5852 6143 108750 52 2 1 238 chain 81711 chr4 191154276 + 159039627 159040546 L1P1 4361 - 229 1145 42885 453 9 5 393 0 1 64 chain 68972 chr4 191154276 + 159040546 159041332 L1PA4 6152 + 5364 6152 48670 418 0 1 360 0 1 8 chain 22899 chr4 191154276 + 159041738 159042010 L1PA7 6471 - 7 290 116114 54 0 8 13 0 2 70 1 2 134 chain 23629 chr4 191154276 + 159042937 159043219 L1PA7 6471 - 5 269 112417 149 18 0 115 chain 30296 chr4 191154276 + 159063077 159063395 AluYb8 318 - 0 318 83929 318 chain 42157 chr4 191154276 + 159072953 159073497 MLT2A2 560 + 0 560 66447 88 0 1 104 0 1 194 14 25 87 0 3 57 chain 173465 chr4 191154276 + 159073497 159076150 L1PB1 5432 + 2814 5423 21656 14 6 7 74 0 1 14 3 0 82 0 1 11 6 0 61 7 10 37 0 1 35 5 1 190 86 0 9 0 87 83 21 22 178 1 0 110 10 8 112 6 5 474 18 11 102 13 15 62 12 0 44 1 4 118 0 9 276 0 3 18 1 2 10 3 0 12 19 17 12 2 0 3 2 0 8 3 1 52 2 1 16 1 0 44 1 0 15 2 0 6 5 4 5 9 0 15 3 1 5 1 0 12 6 4 22 1 0 14 9 8 12 1 0 14 1 0 5 chain 28697 chr4 191154276 + 159076185 159076603 MER4D1 891 + 72 522 90339 14 1 2 103 1 3 20 2 0 24 14 42 134 1 0 17 0 4 87 chain 79984 chr4 191154276 + 159144616 159145575 L1PA8A 6298 - 8 970 43604 39 0 2 6 2 0 510 0 1 158 1 4 84 2 1 157 chain 195729 chr4 191154276 + 159145598 159148043 Harlequin-int 5206 - 1797 5072 19526 105 0 1 415 7 8 246 4 1 16 1 0 50 0 4 301 2 1 209 0 2 206 3 2 175 0 856 262 0 2 63 8 0 112 17 7 71 12 0 160 chain 26047 chr4 191154276 + 159149903 159150326 LTR2 463 - 0 369 99836 80 1 0 8 15 16 237 63 9 19 chain 5340 chr4 191154276 + 159151455 159151518 L1P3b 214 - 88 151 191641 63 chain 5648 chr4 191154276 + 159166576 159166646 MIR 256 + 41 111 188578 70 chain 4751 chr4 191154276 + 159177985 159178039 Tigger2b_Pri 1066 - 816 870 197911 54 chain 22967 chr4 191154276 + 159197291 159197564 L1PA5 6144 - 12 284 115772 117 1 0 155 chain 11578 chr4 191154276 + 159210882 159211065 Tigger3a 397 - 136 378 153993 91 0 10 18 20 69 54 chain 276142 chr4 191154276 + 159215183 159219676 HERVK22-int 3844 + 1 3831 14865 42 3 0 80 0 3 252 0 3 335 4 1 32 0 5 285 4 5 190 17 18 650 1 0 877 11 17 248 1 0 74 1 0 6 1 0 17 8 7 32 1 0 17 3 1 39 3 0 10 7 6 39 2 0 14 26 15 10 2 0 6 129 100 22 0 1 5 1 0 8 808 189 82 22 21 66 chain 107838 chr4 191154276 + 159227604 159228894 L1PA7 6471 - 3 1300 34769 477 1 4 193 0 1 176 1 3 120 0 1 322 chain 83319 chr4 191154276 + 159228894 159229870 L1PA7 6471 + 4172 5151 42193 38 0 2 155 1 2 782 chain 27252 chr4 191154276 + 159241737 159242108 THE1B 368 + 0 368 95429 13 2 0 27 0 5 155 15 9 159 chain 5825 chr4 191154276 + 159242231 159242329 LTR1D 973 - 869 973 186899 29 0 8 11 17 15 41 chain 9790 chr4 191154276 + 159242694 159242822 MER47A 366 - 71 201 161651 56 3 5 69 chain 22578 chr4 191154276 + 159261289 159261645 THE1B 368 + 0 368 117683 44 0 15 89 66 63 157 chain 13327 chr4 191154276 + 159267211 159267404 L1PA8 5853 + 5656 5846 146982 23 1 0 9 1 0 9 1 2 41 3 2 18 1 0 86 chain 4801 chr4 191154276 + 159269689 159269770 MER5A 189 + 30 112 197349 33 16 17 32 chain 40256 chr4 191154276 + 159272095 159272640 MER41B 635 - 4 602 68938 33 0 10 32 0 5 268 12 50 106 4 5 30 1 0 59 chain 13544 chr4 191154276 + 159276554 159276790 MER44A 345 - 22 277 146197 38 20 22 6 2 0 101 15 20 23 0 14 31 chain 134722 chr4 191154276 + 159278937 159280533 L1PA7 6471 + 4871 6470 27073 41 3 1 36 1 0 665 0 3 84 1 2 9 0 3 601 2 1 153 chain 23615 chr4 191154276 + 159282169 159282526 L1PA11 4918 + 4154 4504 112501 156 0 4 14 7 0 17 0 1 4 1 8 35 2 1 10 2 0 71 2 4 6 12 0 13 0 1 5 chain 548119 chr4 191154276 + 159283710 159289854 L1PA3long 6157 - 0 6157 1691 459 2 1 350 2 0 509 0 14 1304 0 2 827 0 1 549 0 1 312 1 0 6 0 1 1085 1 0 729 1 0 7 chain 4036 chr4 191154276 + 159302438 159302484 MER20 218 - 83 129 206832 46 chain 25834 chr4 191154276 + 159311078 159311453 L1PA15 4387 + 3912 4291 100731 21 1 0 156 3 16 25 1 0 55 1 0 22 4 0 9 2 1 53 1 0 21 chain 22766 chr4 191154276 + 159323547 159323861 THE1C 375 - 61 373 116748 116 6 0 16 0 3 84 7 8 85 chain 11405 chr4 191154276 + 159323868 159323999 THE1C-int 1605 - 6 137 154680 131 chain 5808 chr4 191154276 + 159325946 159326013 MLT1D 503 - 28 95 187067 67 chain 33761 chr4 191154276 + 159329041 159329461 LTR12C 1709 + 0 426 78001 214 0 4 54 1 2 13 7 8 131 chain 27641 chr4 191154276 + 159330261 159330615 THE1A 353 + 0 353 94237 110 1 0 243 chain 405162 chr4 191154276 + 159334225 159339985 L1PB1 5432 - 8 5413 9939 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 11 11 8 15 5 0 9 4 0 7 3 0 14 1 0 45 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 1 0 11 97 0 267 0 3 19 0 2 129 1 4 53 3 0 84 0 1 327 1 0 482 2 5 246 0 3 471 7 12 163 293 0 51 5 44 150 0 5 87 4 0 54 0 3 427 29 27 378 0 5 183 0 1 15 15 0 7 1 0 139 5 9 16 0 1 384 10 14 356 0 3 65 1 2 4 1 0 230 0 13 101 16 12 27 chain 454898 chr4 191154276 + 159352894 159357932 L1PA3long 6157 + 1113 6155 8586 49 0 3 404 0 1 571 0 1 1861 0 1 1347 2 0 804 chain 10085 chr4 191154276 + 159369336 159369455 L1P5 443 + 221 340 160154 119 chain 89253 chr4 191154276 + 159372195 159373407 L1PA8 5853 + 4719 5853 39907 135 0 5 150 1 3 59 1 5 7 4 0 4 1 0 311 54 6 86 33 4 70 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 447369 chr4 191154276 + 159384342 159389769 L1PA5 6144 - 0 5097 8835 5 2 0 63 1 0 174 0 2 103 0 5 325 1 0 156 10 14 862 0 6 335 20 0 1535 0 1 251 0 1 327 4 0 85 0 1 59 322 0 787 chain 105430 chr4 191154276 + 159393257 159394427 L1PA3long 6157 - 0 1173 35392 12 0 3 1158 chain 246956 chr4 191154276 + 159394601 159397321 L1PA2 6032 - 1 2729 16395 1174 0 1 217 0 1 404 0 2 848 6 10 71 chain 70809 chr4 191154276 + 159397321 159398091 L1PA2 6032 + 2527 3297 47897 770 chain 38828 chr4 191154276 + 159403630 159404129 L1PA8 5853 - 0 493 70978 93 1 0 17 6 5 49 2 1 9 2 1 70 2 0 44 1 0 48 0 1 155 chain 47417 chr4 191154276 + 159404129 159404695 L1PA8 5853 + 4777 5348 60889 166 0 4 59 1 0 4 0 2 336 chain 120271 chr4 191154276 + 159410249 159411725 L1PA8 5853 - 0 1477 30952 112 2 1 46 1 0 15 1 0 71 5 4 40 1 0 403 0 6 49 0 1 94 2 0 229 1 0 47 0 1 160 0 1 197 chain 16926 chr4 191154276 + 159420699 159420927 L1PA8 5853 - 0 223 135778 93 1 0 9 1 0 7 1 0 53 1 0 9 1 0 52 chain 174024 chr4 191154276 + 159421500 159423545 L1PA7 6471 - 10 2067 21588 120 0 3 129 4 9 423 0 6 122 7 5 23 1 0 735 0 1 481 chain 11958 chr4 191154276 + 159426768 159427001 L1MA3 4352 + 4124 4325 152366 52 1 3 26 0 2 29 4 0 24 2 0 22 1 0 5 2 1 23 29 1 13 chain 18447 chr4 191154276 + 159428764 159428968 L1PA3long 6157 + 5953 6157 131652 204 chain 3939 chr4 191154276 + 159458163 159458225 MADE1 96 - 0 96 208285 5 1 0 27 4 39 25 chain 26963 chr4 191154276 + 159460339 159460642 L1PA4 6152 + 5847 6151 96395 223 0 1 80 chain 540720 chr4 191154276 + 159465601 159471751 L1PA4 6152 - 1 6151 2705 5 2 0 107 0 1 34 27 28 604 1 0 1483 0 2 2907 0 1 249 1 0 154 1 0 575 chain 26384 chr4 191154276 + 159483428 159483703 AluYa5 310 + 34 309 98475 275 chain 16792 chr4 191154276 + 159488519 159488724 LTR12C 1709 + 928 1180 136133 149 0 47 56 chain 2722 chr4 191154276 + 159488724 159488755 LTR12C 1709 + 1055 1086 225339 31 chain 830 chr4 191154276 + 159488872 159488907 LTR12C 1709 + 683 718 190940 35 chain 6956 chr4 191154276 + 159490237 159490537 L1MC1 2226 + 1758 2149 177771 36 5 6 41 139 242 20 7 5 14 1 0 4 8 0 3 1 0 6 1 0 14 chain 4053 chr4 191154276 + 159500086 159500404 MLT1C 463 + 64 391 206594 33 37 29 13 1 0 7 96 103 18 95 106 18 chain 10973 chr4 191154276 + 159536077 159536218 Tigger1 2417 - 1118 1260 156304 97 1 2 43 chain 4208 chr4 191154276 + 159543477 159543655 L1MA9 1812 + 1592 1736 204441 24 7 5 31 55 25 16 4 5 5 1 0 9 14 12 12 chain 4355 chr4 191154276 + 159565497 159565551 L1MA5A 2387 - 768 821 202519 45 1 0 8 chain 66788 chr4 191154276 + 159578546 159579516 LTR12D 1347 + 78 1347 49740 102 9 9 14 83 83 12 3 38 172 0 150 40 7 24 263 0 97 265 chain 414850 chr4 191154276 + 159579627 159584535 HERV9-int 5642 + 0 4824 9673 795 1 0 312 84 0 263 2 0 210 16 16 1232 0 1 1257 1 2 456 0 1 279 chain 74994 chr4 191154276 + 159585973 159586993 LTR12D 1347 + 0 1347 46017 182 54 105 12 4 40 95 0 150 115 14 7 235 1 0 44 0 97 248 0 1 16 chain 22346 chr4 191154276 + 159609566 159609844 AluYc 301 + 11 291 118721 107 1 3 170 chain 23550 chr4 191154276 + 159623809 159624200 L1MA5 2750 - 147 537 112849 29 15 12 47 3 0 106 1 0 13 15 14 53 22 24 13 4 9 70 chain 18974 chr4 191154276 + 159647855 159648236 THE1D 372 - 0 372 130173 16 1 0 116 59 0 11 6 63 77 46 33 37 0 7 12 chain 29450 chr4 191154276 + 159655932 159656241 AluYa5 310 - 1 310 86838 309 chain 20002 chr4 191154276 + 159657765 159658073 THE1C 375 - 59 375 127139 119 16 11 7 2 0 87 13 28 64 chain 141788 chr4 191154276 + 159666937 159668611 SVA_D 2077 - 0 2008 25860 316 1 0 280 0 49 97 0 205 37 0 1 54 1 4 80 1 38 26 40 0 163 0 40 48 0 40 530 chain 94962 chr4 191154276 + 159680348 159681480 SVA_A 1864 + 15 1864 38109 224 4 0 244 0 671 81 46 92 106 0 4 427 chain 8049 chr4 191154276 + 159715741 159715837 U6 107 - 0 96 170764 96 chain 18449 chr4 191154276 + 159716784 159717124 MER1B 344 + 0 344 131644 14 85 83 170 1 8 46 5 4 19 chain 4230 chr4 191154276 + 159726249 159726294 MADE1 96 - 50 95 204172 45 chain 30101 chr4 191154276 + 159751396 159751713 AluYb8 318 - 1 318 84490 317 chain 24210 chr4 191154276 + 159774528 159774821 L1PA5 6144 - 2 291 109151 7 4 0 282 chain 4851 chr4 191154276 + 159786357 159786415 L1MB2 1706 - 12 70 196769 58 chain 88267 chr4 191154276 + 159800747 159801755 L1PA5 6144 + 5130 6142 40273 12 0 5 108 0 1 649 0 2 228 4 0 7 chain 131428 chr4 191154276 + 159802565 159804157 SVA_C 1631 + 0 1623 27769 11 12 10 13 3 1 557 11 0 39 0 37 61 40 0 122 44 0 60 0 93 619 chain 17897 chr4 191154276 + 159805826 159806469 THE1D 372 - 40 372 133109 138 359 40 15 0 4 31 3 4 13 30 33 54 chain 518844 chr4 191154276 + 159817996 159824585 L1PA7 6471 - 3 6468 5286 7 4 0 9 1 0 141 7 6 33 0 4 136 0 1 507 0 3 233 0 1 712 0 4 237 8 0 216 5 0 252 5 0 82 0 4 4 1 0 323 0 4 308 0 2 139 0 4 180 0 1 22 0 4 189 1 2 35 0 1 28 2 3 15 6 7 26 4 0 5 0 4 99 7 6 156 1 3 134 162 0 9 0 4 59 0 2 45 0 2 26 1 0 267 0 3 310 1 0 57 2 4 174 5 9 171 0 1 102 0 1 9 3 0 5 0 3 197 2 0 59 2 3 127 11 12 247 25 34 231 chain 82404 chr4 191154276 + 159841174 159842249 MER11A 1151 + 0 1151 42584 62 0 99 67 1 0 66 4 0 149 0 1 94 0 1 124 0 1 146 0 26 26 49 0 58 0 1 7 0 2 37 1 0 16 0 1 118 1 0 49 chain 7352 chr4 191154276 + 159842632 159842842 MSTA 426 + 185 405 175076 19 110 120 81 chain 129218 chr4 191154276 + 159848671 159850225 LTR12C 1709 + 0 1709 28262 706 0 159 247 1 0 5 3 1 106 0 4 180 0 4 93 1 0 152 9 1 51 chain 16596 chr4 191154276 + 159872418 159872655 Tigger3a 397 - 65 357 136683 5 0 2 187 18 71 27 chain 315887 chr4 191154276 + 159895464 159900038 L1PA7 6471 - 3 3971 12772 157 3 4 189 1 0 305 0 2 194 0 3 5 3 7 35 0 2 72 1 0 418 0 1 125 1 0 271 0 12 179 1 2 178 0 1 201 309 0 226 7 5 38 0 3 86 0 1 283 326 0 94 0 1 268 0 4 274 1 0 309 1 0 13 chain 20723 chr4 191154276 + 159900041 159900284 L1PA7 6471 - 5530 5773 124882 243 chain 20683 chr4 191154276 + 159900288 159900557 L1PA7 6471 - 5795 6064 125028 61 1 0 4 1 0 165 6 8 31 chain 503227 chr4 191154276 + 159900579 159912033 L1PA7 6471 + 0 6465 6658 146 0 41 216 16 0 204 5 0 6 0 2 203 6 7 361 0 2 53 0 4 12 8 0 283 0 5 864 24 5 89 1 0 117 0 4 8 0 1 190 1 0 9 33 33 227 0 1 236 0 1 33 5025 2 182 4 8 459 0 4 296 1 4 204 0 2 301 0 1 109 1 4 489 1 0 119 0 1 74 6 9 37 1 2 370 15 4 90 0 4 90 1 0 165 5 15 5 1 0 52 chain 2613 chr4 191154276 + 159903403 159903434 L1PA7 6471 - 3604 3635 227565 31 chain 451257 chr4 191154276 + 159903945 159908941 L1PA3long 6157 + 1124 6157 8728 723 0 5 93 0 12 622 0 13 2289 0 4 1013 0 3 256 chain 21994 chr4 191154276 + 159932627 159932922 AluSp 311 + 7 298 120257 41 13 12 75 3 0 163 chain 6632 chr4 191154276 + 159935665 159935736 L1PA2 6032 - 3 74 180225 71 chain 28884 chr4 191154276 + 159974107 159974407 AluYa5 310 - 10 310 89514 300 chain 7030 chr4 191154276 + 159985450 159985541 HY1 111 - 0 102 177250 53 0 11 38 chain 92177 chr4 191154276 + 159988753 159989807 L1PA4 6152 + 5082 6136 38910 308 1 0 132 0 1 473 12 12 128 chain 6138 chr4 191154276 + 160012551 160012661 L1PA10 4194 + 4052 4161 184099 32 0 3 15 20 17 31 1 0 11 chain 29695 chr4 191154276 + 160015604 160015920 AluYb8 318 - 2 318 85849 316 chain 4128 chr4 191154276 + 160021874 160021947 Tigger5 388 + 301 375 205546 31 12 13 30 chain 4518 chr4 191154276 + 160043240 160043303 Tigger2b_Pri 1066 + 148 211 200587 12 0 1 35 1 0 15 chain 3808 chr4 191154276 + 160055471 160055526 L1ME1 1623 - 136 185 210254 41 6 0 8 chain 20867 chr4 191154276 + 160077648 160077917 L1PA6 6164 - 10 273 124402 67 1 0 72 17 12 112 chain 111228 chr4 191154276 + 160104898 160106162 L1PA5 6144 - 3 1274 33880 832 1 2 13 1 0 326 0 7 91 chain 19332 chr4 191154276 + 160111685 160112051 THE1C 375 - 0 375 129138 18 0 5 125 45 41 5 0 2 40 54 60 79 chain 3762 chr4 191154276 + 160127039 160127080 MER47A 366 - 127 168 210936 41 chain 5106 chr4 191154276 + 160171384 160171463 L1PB1 5432 + 5349 5424 194017 21 1 0 21 1 0 13 1 0 16 1 0 4 chain 3918 chr4 191154276 + 160172600 160172853 LTR12C 1709 + 1026 1084 208578 30 195 0 28 chain 2229 chr4 191154276 + 160172853 160172888 LTR12C 1709 + 961 1037 230476 16 1 42 18 chain 23429 chr4 191154276 + 160181911 160182195 AluSp 311 - 23 300 113480 156 2 0 72 4 0 6 1 0 43 chain 115210 chr4 191154276 + 160198074 160199432 L1PA5 6144 - 2 1335 32712 7 5 0 477 2 0 386 0 1 134 19 0 328 chain 83302 chr4 191154276 + 160236576 160237579 LTR13 1007 - 0 1007 42202 110 0 1 77 3 4 371 1 0 4 0 1 53 4 5 259 0 1 121 chain 24999 chr4 191154276 + 160256723 160257011 AluYc3 301 + 6 295 104798 112 1 2 175 chain 67125 chr4 191154276 + 160291687 160292849 L1PB1 5432 + 4261 5103 49606 124 1 0 241 2 0 171 1 9 113 325 0 184 chain 16238 chr4 191154276 + 160297138 160297365 Tigger2 2703 + 2320 2550 137656 51 1 4 33 1 7 6 6 0 129 chain 5319 chr4 191154276 + 160301986 160302072 Tigger2 2703 - 148 223 191830 17 15 4 54 chain 16738 chr4 191154276 + 160311579 160311803 LTR12C 1709 + 773 1037 136288 64 1 0 48 6 47 105 chain 37219 chr4 191154276 + 160317729 160318231 MLT2A1 477 + 0 477 73210 169 4 1 215 4 0 14 1 0 4 8 0 11 19 11 4 1 0 48 chain 56130 chr4 191154276 + 160336448 160337152 LTR12 884 + 0 869 55049 25 1 0 52 0 66 79 0 66 31 0 25 32 2 0 184 2 13 296 chain 37490 chr4 191154276 + 160346547 160346991 LTR7 482 - 7 482 72824 196 1 32 247 chain 25996 chr4 191154276 + 160351678 160351988 AluSp 311 - 1 311 100033 310 chain 18330 chr4 191154276 + 160360345 160360565 L1PA7 6471 - 1 221 131984 220 chain 146727 chr4 191154276 + 160370573 160372240 L1PA5 6144 - 3 1681 25050 256 2 0 58 0 1 97 0 1 425 0 4 23 1 5 536 0 3 269 chain 4737 chr4 191154276 + 160380852 160380922 MADE1 96 + 0 96 198061 17 0 25 26 3 4 24 chain 20657 chr4 191154276 + 160393553 160393832 L1PA17 2846 + 1326 1607 125119 61 0 1 83 9 10 126 chain 3368 chr4 191154276 + 160415143 160415185 MER6B 211 + 167 209 217702 42 chain 24796 chr4 191154276 + 160435245 160435895 L1PA11 4918 - 445 784 105915 79 2 1 36 309 4 16 0 6 6 11 0 191 chain 21215 chr4 191154276 + 160443540 160443823 AluSq2 311 + 7 303 123160 126 1 2 103 0 10 12 5 7 36 chain 146381 chr4 191154276 + 160443866 160446441 SVA_D 2077 + 288 2077 25106 136 0 9 292 39 39 153 1 0 20 7 0 7 21 11 58 84 25 54 0 1 29 721 0 91 0 1 174 0 1 335 0 3 33 1 0 309 2 0 8 chain 2006 chr4 191154276 + 160444600 160444684 SVA_D 2077 + 1130 1214 92857 84 chain 37933 chr4 191154276 + 160444783 160445235 SVA_F 1814 + 686 1274 72231 50 0 119 25 1 2 65 0 15 214 0 1 97 chain 3155 chr4 191154276 + 160445292 160445324 SVA_F 1814 + 1106 1138 178182 32 chain 3715 chr4 191154276 + 160445324 160445410 SVA_F 1814 + 1089 1176 139857 38 0 1 48 chain 3657 chr4 191154276 + 160445410 160445451 SVA_F 1814 + 1128 1169 172542 41 chain 516993 chr4 191154276 + 160449181 160455325 L1PA5 6144 - 3 6130 5483 327 0 3 1888 0 1 246 1 0 3 1 0 471 10 0 31 4 0 394 0 4 468 1 0 1075 0 1 57 16 7 135 1 2 75 24 0 360 0 10 31 1 0 414 5 19 105 chain 298584 chr4 191154276 + 160489100 160493032 L1PA11 4918 - 388 4318 13498 8 2 0 5 3 0 9 4 0 19 2 1 14 2 0 67 2 0 13 17 14 51 2 0 6 5 0 872 1 0 180 12 14 491 0 3 49 6 0 8 1 0 121 0 1 80 7 8 30 0 1 131 1 0 44 0 3 53 0 2 50 0 3 348 9 1 13 6 10 180 0 3 5 9 5 255 13 13 20 1 0 4 0 8 277 0 13 424 chain 526706 chr4 191154276 + 160530566 160536691 L1PA5 6144 - 0 6130 4526 510 2 0 340 1 0 430 0 1 1188 6 2 136 0 1 507 1 0 202 0 2 547 34 35 119 0 1 552 0 3 45 3 4 105 0 5 136 6 2 149 12 13 551 0 1 543 chain 10530 chr4 191154276 + 160536733 160536931 LTR19A 502 - 207 502 158134 32 3 40 13 26 87 85 5 4 34 chain 13650 chr4 191154276 + 160541412 160541635 MER31A 484 + 8 236 145780 79 2 7 29 10 27 14 17 0 72 chain 515876 chr4 191154276 + 160544879 160551324 L1PA7 6471 - 7 6466 5587 263 2 0 495 2 0 6 6 7 25 0 1 39 0 4 63 0 3 71 4 17 1363 0 3 35 4 5 16 1 2 312 1 0 129 8 13 95 1 0 11 3 2 76 3 0 5 21 3 301 11 1 33 0 1 431 0 1 299 4 5 67 1 0 204 0 3 264 0 1 572 0 4 166 0 2 143 7 18 113 22 9 297 4 13 42 2 3 402 chain 73013 chr4 191154276 + 160575320 160576250 L1PA7 6471 - 17 956 47019 56 0 1 266 1 0 382 16 24 25 0 2 77 2 1 26 3 2 32 0 1 44 chain 39772 chr4 191154276 + 160613734 160614333 THE1C-int 1605 + 15 541 69664 402 0 1 21 32 0 6 53 11 85 chain 541712 chr4 191154276 + 160630695 160636709 L1PA3long 6157 - 1 6151 2557 5 0 2 1795 0 4 1178 0 1 2267 8 136 615 0 1 146 chain 5175 chr4 191154276 + 160637411 160637474 MLT1B 390 + 302 365 193288 63 chain 4126 chr4 191154276 + 160638695 160638740 L1PA3long 6157 - 277 322 205574 45 chain 27138 chr4 191154276 + 160638740 160639032 L1PA3long 6157 + 5863 6155 95800 292 chain 27387 chr4 191154276 + 160641738 160642102 THE1B 368 + 0 368 95013 169 1 0 29 0 3 8 1 5 18 1 0 7 2 1 128 chain 23104 chr4 191154276 + 160642802 160643194 Tigger3b 1229 - 536 936 115122 73 10 15 23 8 2 7 0 9 51 6 4 82 21 22 78 2 0 8 0 3 23 chain 7568 chr4 191154276 + 160661162 160661254 L1MA4 2864 - 372 464 173742 92 chain 113744 chr4 191154276 + 160661369 160663069 L1PB1 5432 - 17 1699 33165 11 1 0 12 1 0 22 6 5 19 2 0 14 59 44 7 1 0 15 12 14 13 21 19 48 20 14 14 1 0 10 10 9 9 5 0 6 4 7 20 0 4 9 29 26 23 0 1 391 1 2 514 1 0 144 6 7 20 0 11 94 1 0 104 chain 8473 chr4 191154276 + 160668861 160668969 L1MA9 1812 - 482 590 168437 108 chain 35533 chr4 191154276 + 160707314 160707921 MLT2A1 477 + 0 477 75499 168 5 2 73 1 0 142 161 35 57 chain 4168 chr4 191154276 + 160707802 160707849 MLT2A1 477 + 336 383 204998 47 chain 89305 chr4 191154276 + 160709642 160710704 MER11C 1089 + 0 1074 39883 250 0 1 66 0 4 369 0 4 43 0 1 207 3 4 114 1 2 9 chain 541401 chr4 191154276 + 160725524 160731527 L1PA3long 6157 + 0 6156 2605 152 0 1 295 0 1 588 0 143 359 1 0 1643 2 1 1227 0 1 600 0 9 980 4 0 98 0 4 54 chain 105182 chr4 191154276 + 160736956 160738367 L1PA13 3608 + 2054 3444 35454 191 1 3 118 8 9 21 0 1 16 3 2 462 1 0 22 0 1 61 13 0 76 1 0 95 2 0 28 1 0 113 2 0 62 1 0 51 2 0 10 2 0 48 chain 87404 chr4 191154276 + 160740330 160741405 L1PA7 6471 - 1306 2380 40604 6 0 4 5 3 0 201 2 1 255 1 0 354 2 1 100 0 1 146 chain 106337 chr4 191154276 + 160741406 160742685 L1PA7 6471 + 5173 6469 35172 18 0 1 422 0 3 243 0 8 582 0 5 14 chain 35929 chr4 191154276 + 160753613 160754034 L1PA8 5853 + 5239 5672 74982 229 0 15 81 1 0 46 2 0 62 chain 4808 chr4 191154276 + 160762286 160762373 L1PB3 3668 - 73 153 197257 13 1 0 15 5 1 37 3 1 13 chain 128221 chr4 191154276 + 160768349 160769873 L1PA7 6471 - 48 1573 28514 109 0 1 42 3 0 641 0 6 46 1 0 605 0 1 23 3 0 51 chain 120222 chr4 191154276 + 160789319 160790751 LTR12C 1709 - 0 1709 30972 434 0 1 46 0 4 102 7 5 5 1 0 134 0 278 269 1 0 158 8 7 179 1 0 87 chain 417297 chr4 191154276 + 160793574 160798893 L1PA8 5853 - 6 5803 9595 87 1 0 19 2 1 43 5 4 14 1 0 21 0 8 41 2 0 47 1 0 40 0 1 512 0 2 425 8 11 1260 5 6 275 0 42 38 0 1 131 0 3 75 9 468 241 0 12 506 0 1 726 0 3 403 4 5 36 1 0 31 19 7 189 53 17 13 1 0 11 2 0 21 chain 29664 chr4 191154276 + 160807473 160807810 L1PA7 6471 + 6112 6449 85983 337 chain 26613 chr4 191154276 + 160818401 160818804 THE1C 375 + 0 375 97620 27 0 1 97 3 0 59 1 2 155 41 14 20 chain 6137 chr4 191154276 + 160841360 160841455 L1PA6 6164 - 2 93 184103 8 2 0 20 6 4 59 chain 4122 chr4 191154276 + 160849296 160849556 MER76-int 525 + 145 398 205633 4 1 0 21 193 187 41 chain 523824 chr4 191154276 + 160850231 160856360 L1PA4 6152 - 11 6142 4784 2358 13 14 1253 1 0 1280 0 1 4 21 20 300 0 1 515 0 1 384 chain 85190 chr4 191154276 + 160859520 160860488 SVA_D 2077 - 7 1362 41456 530 0 225 277 0 1 74 0 162 78 1 0 8 chain 106101 chr4 191154276 + 160860558 160861795 SVA_F 1814 - 523 1814 35231 17 1 0 61 49 0 251 0 15 8 15 64 10 0 40 825 chain 4143 chr4 191154276 + 160860637 160860686 SVA_F 1814 - 777 826 96976 49 chain 75281 chr4 191154276 + 160897639 160898603 LTR5_Hs 974 - 0 974 45880 191 7 7 97 3 5 17 0 1 24 7 6 164 0 4 110 0 1 251 0 3 93 chain 32642 chr4 191154276 + 160899053 160899513 LTR10F 562 + 0 497 79778 81 0 5 36 28 0 21 4 32 25 7 0 18 0 14 9 0 24 135 0 1 96 chain 183151 chr4 191154276 + 160914227 160916773 L1PA8 5853 - 0 2507 20665 92 6 5 11 10 9 34 29 27 67 14 0 36 3 0 5 16 18 435 8 9 17 3 5 74 2 0 82 0 3 584 2 0 151 0 1 456 13 11 45 38 17 6 0 1 35 0 1 240 2 0 30 chain 78394 chr4 191154276 + 160916777 160918132 L1P3 4156 + 2670 3949 44326 275 0 9 332 0 1 36 373 287 339 chain 516253 chr4 191154276 + 160922508 160929286 L1PA7 6471 + 1 6466 5552 402 0 1 67 5 4 134 2 3 87 26 27 327 7 1 186 0 4 18 27 23 62 8 9 37 0 3 45 0 2 5 2 0 651 5 7 261 0 3 266 19 0 478 0 1 192 0 2 524 1 0 176 0 3 79 312 0 169 0 1 68 7 8 26 1 0 43 0 1 824 1 0 238 0 5 149 1 4 680 31 30 129 chain 25968 chr4 191154276 + 160952943 160953276 L1PA7 6471 - 1 331 100142 42 8 5 283 chain 9136 chr4 191154276 + 160957318 160957420 L1PA6 6164 - 2 104 164878 102 chain 26127 chr4 191154276 + 160963332 160963672 THE1A 353 - 0 353 99493 141 5 7 41 0 12 42 1 0 110 chain 124310 chr4 191154276 + 160963679 160965246 THE1A-int 1579 - 7 1579 29594 178 1 0 4 7 0 528 0 1 91 0 3 170 0 5 247 11 14 92 0 1 238 chain 170666 chr4 191154276 + 160969228 160971959 L1PB1 5432 + 3015 5423 21968 211 0 4 224 0 6 123 6 5 94 1 5 45 6 12 26 8 5 95 3 4 653 0 4 68 6 10 17 2 0 48 0 5 163 1 0 155 1 0 104 346 26 11 1 0 9 1 0 9 2 0 3 2 0 9 6 4 47 1 0 17 1 0 37 0 1 6 1 0 16 2 0 8 1 0 7 8 0 12 2 0 9 1 0 16 2 0 22 1 0 22 1 0 12 1 0 19 chain 28894 chr4 191154276 + 160975404 160975722 AluYb8 318 + 0 316 89480 132 2 0 184 chain 82595 chr4 191154276 + 160976618 160977665 MER11C 1089 - 16 1089 42503 8 0 1 144 1 0 56 1 2 124 0 1 38 7 9 132 0 1 171 1 0 65 0 4 62 0 9 21 3 8 25 0 4 188 chain 94947 chr4 191154276 + 160982322 160983484 L1PA7 6471 - 5 1186 38112 8 2 0 146 3 0 31 0 2 139 0 3 296 0 2 218 6 8 55 0 1 6 0 1 152 0 13 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11 9 0 553 17 0 77 1 0 17 1 0 171 1 0 90 1 5 470 chain 107046 chr4 191154276 + 161088446 161089777 L1PA7 6471 - 3 1307 34956 9 2 0 449 25 1 157 2 0 97 0 3 124 0 1 14 2 1 130 1 0 119 1 0 199 chain 6846 chr4 191154276 + 161092613 161092696 THE1D 372 + 79 162 178622 83 chain 72902 chr4 191154276 + 161111138 161111929 L1PA2 6032 - 2 794 47069 339 0 1 452 chain 3724 chr4 191154276 + 161115372 161115418 MER58A 224 - 17 63 211582 46 chain 77218 chr4 191154276 + 161176980 161177855 MER11D 897 - 0 897 44859 287 1 24 569 1 0 17 chain 36107 chr4 191154276 + 161177864 161178292 HERVK11D-int 613 - 9 436 74757 316 1 0 111 chain 84732 chr4 191154276 + 161181255 161182403 L1PA8 5853 - 0 1144 41624 93 1 0 19 2 1 45 19 17 62 4 0 6 2 0 46 1 0 47 1 2 216 1 3 208 1 4 73 0 2 3 5 0 17 1 5 275 chain 173376 chr4 191154276 + 161189130 161191039 L1PA4 6152 - 1 1909 21668 779 1 0 1129 chain 410801 chr4 191154276 + 161192202 161197405 HERVL-int 5654 + 0 5224 9779 12 6 7 228 1 0 320 2 1 182 11 35 237 3 0 5 0 4 1023 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160 5 6 61 0 1 386 1 0 49 0 1 1098 chain 28405 chr4 191154276 + 163412319 163412680 THE1C 375 + 0 360 91558 350 1 0 10 chain 10194 chr4 191154276 + 163465683 163465868 L1PB 1623 - 98 272 159654 12 1 0 11 5 1 13 11 7 27 2 1 7 1 0 95 chain 15624 chr4 191154276 + 163466103 163466362 L1PA15 4387 - 75 323 139509 42 6 3 52 13 8 18 5 4 55 1 0 26 1 0 40 chain 56869 chr4 191154276 + 163471389 163472073 LTR13 1007 + 0 683 54621 73 2 0 307 7 8 295 chain 53154 chr4 191154276 + 163478239 163478902 PABL_A 660 - 0 660 56921 154 1 0 4 0 1 274 0 1 50 1 0 84 13 10 82 chain 50734 chr4 191154276 + 163483643 163484281 PABL_A 660 - 25 660 58477 129 1 0 4 0 1 321 1 0 90 10 8 82 chain 15504 chr4 191154276 + 163485743 163485956 L1PA8 5853 + 5639 5849 139877 40 1 0 61 2 1 19 1 0 89 chain 4773 chr4 191154276 + 163492001 163492111 MIR 256 + 81 192 197658 52 41 42 17 chain 29898 chr4 191154276 + 163501789 163502105 AluYb8 318 + 0 316 85109 316 chain 21225 chr4 191154276 + 163502574 163502824 L1PA5 6144 + 5896 6144 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163635548 163635890 LTR7 482 + 0 473 98152 63 0 89 72 0 1 38 1 32 19 0 10 149 chain 29165 chr4 191154276 + 163646927 163647234 AluYa5 310 - 3 310 88228 307 chain 130221 chr4 191154276 + 163660510 163662058 LTR12C 1709 + 0 1708 28040 681 11 169 261 1 0 6 7 5 102 0 4 12 0 1 467 chain 5972 chr4 191154276 + 163663744 163663823 MADE1 96 - 0 96 185496 47 1 18 31 chain 257464 chr4 191154276 + 163675519 163678790 HERVL-int 5654 + 2352 5654 15848 140 0 13 166 10 11 396 0 3 123 15 8 283 1 0 13 0 10 80 7 3 365 0 2 117 5 6 276 27 31 95 0 1 115 0 1 147 6 0 10 1 7 450 4 5 29 0 1 170 0 6 50 5 4 165 chain 29977 chr4 191154276 + 163678790 163679231 MLT2A1 477 + 0 477 84886 115 1 0 4 0 1 6 0 5 8 1 2 21 7 11 209 24 51 25 1 0 19 chain 25829 chr4 191154276 + 163706433 163706745 AluY 311 + 0 295 100749 127 17 0 168 chain 265176 chr4 191154276 + 163719392 163722637 L1PA7 6471 - 857 4176 15431 327 4 34 41 0 1 22 0 1 233 2 0 502 6 7 119 3 8 106 1 15 198 0 3 198 0 2 173 0 1 611 0 1 136 0 1 123 0 3 111 1 3 256 2 13 70 chain 69254 chr4 191154276 + 163722650 163723490 L1PA7 6471 + 5630 6470 48704 209 0 4 294 0 1 194 4 0 134 1 0 4 chain 8243 chr4 191154276 + 163735829 163735933 MLT1A 405 + 297 401 169719 104 chain 74587 chr4 191154276 + 163738213 163739182 MER11A 1151 + 0 1151 46217 55 0 99 135 8 5 94 0 1 51 7 8 90 0 1 20 1 0 124 5 7 112 0 81 34 0 1 53 0 1 127 2 1 51 chain 50629 chr4 191154276 + 163757086 163757780 LTR12 884 - 15 884 58559 33 0 1 79 6 14 23 4 107 48 1 0 187 3 1 38 1 68 245 1 0 25 chain 36277 chr4 191154276 + 163772366 163772838 LTR2B 499 - 0 490 74527 301 14 15 50 3 22 46 1 0 51 1 0 5 chain 64517 chr4 191154276 + 163790225 163791119 L1PB1 5432 + 3739 5180 50792 319 0 546 12 0 5 91 2 0 110 12 13 267 7 12 20 1 0 8 5 4 10 2 0 3 2 0 9 2 0 12 chain 5318 chr4 191154276 + 163793078 163793136 L1PA3long 6157 - 11 69 191842 58 chain 138882 chr4 191154276 + 163793593 163795116 L1PA3long 6157 - 0 1523 26335 20 1 0 383 0 1 1119 chain 2874 chr4 191154276 + 163801683 163801728 MADE1 96 + 1 47 227448 22 3 4 20 chain 22869 chr4 191154276 + 163807335 163807615 AluSp 311 + 21 298 116232 111 3 0 166 chain 24264 chr4 191154276 + 163809654 163809940 AluY 311 + 11 298 108877 121 0 1 165 chain 29399 chr4 191154276 + 163814657 163814964 AluYa5 310 - 3 310 87080 307 chain 29438 chr4 191154276 + 163863165 163863475 AluYa5 310 - 0 310 86906 310 chain 31887 chr4 191154276 + 163877616 163878022 MLT2A1 477 + 0 405 81032 119 0 1 22 0 1 26 1 5 30 2 0 191 5 0 10 chain 342267 chr4 191154276 + 163887023 163891483 L1PA7 6471 - 6 6471 11824 116 4 7 26 0 1 6 14 15 596 2 0 70 5 4 52 16 2024 49 4 0 26 0 1 174 2 1 209 6 5 4 1 0 268 3 0 174 1 0 48 0 1 261 0 1 451 0 2 73 1 2 24 1 5 10 0 1 197 0 1 58 8 7 610 0 2 121 14 0 7 7 22 175 9 0 150 1 2 406 chain 37790 chr4 191154276 + 163896523 163896995 MER4A1 472 - 0 472 72430 472 chain 517430 chr4 191154276 + 163919883 163926329 L1PA7 6471 - 4 6468 5432 6 4 0 147 0 29 12 0 1 41 1 0 529 2 0 81 1 0 434 10 1 234 2 0 190 0 1 275 0 1 77 1 2 184 0 1 20 2 1 264 0 1 439 13 12 397 3 0 7 0 3 333 1 0 109 1 0 273 3 4 189 0 3 740 0 1 643 0 1 345 23 24 149 22 21 239 chain 115516 chr4 191154276 + 163940057 163941332 L1PA3long 6157 - 1131 2408 32603 732 0 2 543 chain 101754 chr4 191154276 + 163941332 163942465 L1PA3long 6157 + 5024 6156 36330 874 1 0 258 chain 31059 chr4 191154276 + 163953982 163954444 LTR19A 502 - 0 502 82418 43 23 28 127 1 0 83 1 38 134 16 15 34 chain 26214 chr4 191154276 + 163959552 163959862 AluSp 311 - 0 305 99145 29 1 0 265 4 0 11 chain 43858 chr4 191154276 + 163965204 163965754 MLT2A2 560 + 0 560 64377 168 13 12 222 0 11 147 chain 315556 chr4 191154276 + 163975782 163979934 L1PA8 5853 - 0 4162 12784 79 0 1 6 8 7 19 13 12 40 15 12 17 34 9 4 0 1 36 2 0 27 0 4 15 1 0 511 0 1 43 0 2 112 0 2 312 1 0 392 0 1 116 0 10 847 0 1 65 0 3 20 0 2 115 1 2 6 1 0 15 1 3 13 0 11 44 0 1 4 12 13 9 0 1 26 0 4 372 1 2 449 23 8 4 1 0 39 0 4 38 0 1 140 9 15 94 chain 159494 chr4 191154276 + 163987254 163989535 L1PB1 5432 + 3220 5430 23402 184 0 9 241 0 1 70 2 0 205 1 2 65 5 6 372 12 1 241 0 4 8 3 6 13 0 1 59 1 0 293 7 0 102 55 19 16 1 0 9 1 0 11 6 2 10 5 3 47 2 1 10 6 5 41 45 31 19 24 19 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 9475 chr4 191154276 + 164001835 164002009 MER4A 717 + 0 176 163193 18 22 7 20 0 1 24 6 21 31 2 3 51 chain 31259 chr4 191154276 + 164014321 164014746 LTR7B 505 + 0 495 82065 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 38 4 0 5 1 0 26 0 1 52 2 1 53 chain 283076 chr4 191154276 + 164014756 164018187 HERVH-int 3825 + 0 3756 14463 532 88 0 38 1 0 10 1 0 24 1 151 24 1 0 675 0 2 229 4 31 299 0 10 65 0 7 736 1 5 232 9 11 39 8 218 254 3 8 110 1 0 46 chain 2196 chr4 191154276 + 164015303 164015328 HERVH-int 3825 + 486 511 236601 25 chain 2110 chr4 191154276 + 164015328 164015350 HERVH-int 3825 + 548 570 237559 22 chain 31771 chr4 191154276 + 164018633 164019055 LTR7B 505 + 0 497 81213 105 0 10 60 12 75 28 0 2 38 0 1 43 1 0 26 0 1 52 2 1 55 chain 90906 chr4 191154276 + 164023673 164024942 HERVH-int 3825 - 259 3825 39325 109 14 16 74 13 14 50 3 1 30 30 29 57 10 5 92 0 3 61 8 9 225 11 0 432 2 2311 48 chain 4465 chr4 191154276 + 164024954 164025027 LTR7 482 - 10 84 201165 39 13 14 21 chain 133314 chr4 191154276 + 164073815 164075369 LTR12C 1709 + 0 1709 27366 611 5 0 87 0 159 252 3 2 6 2 0 107 0 4 481 chain 4231 chr4 191154276 + 164077637 164077708 MER3 215 - 50 121 204149 9 1 0 29 6 7 26 chain 16466 chr4 191154276 + 164101240 164101523 LTR19C 757 + 0 272 137025 38 1 0 13 13 10 25 14 10 11 5 2 59 1 0 26 4 5 73 chain 96637 chr4 191154276 + 164110239 164111421 LTR12C 1709 - 0 1709 37659 102 0 1 4 10 39 23 2 1 311 0 4 41 0 485 120 6 5 270 0 10 293 chain 25326 chr4 191154276 + 164126944 164127228 L1PA4 6152 + 5863 6152 103088 278 0 5 6 chain 536343 chr4 191154276 + 164128166 164134120 L1PA3long 6157 - 5 6156 3403 756 0 71 872 0 1 672 0 1 1043 0 1 415 0 1 1179 4 0 236 0 128 623 0 1 144 3 0 7 chain 24850 chr4 191154276 + 164151614 164152109 L1PB1 5432 - 5 476 105626 5 2 0 18 1 0 9 5 4 22 1 0 4 0 1 18 2 0 14 8 5 15 30 16 16 1 0 42 2 1 16 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 29 39 119 chain 26166 chr4 191154276 + 164155834 164156186 THE1A 353 - 0 353 99339 39 11 13 4 1 0 187 1 0 85 0 1 24 chain 120032 chr4 191154276 + 164156186 164157758 THE1A-int 1579 - 0 1579 31046 156 2 7 54 7 0 341 11 15 418 4 5 138 5 7 421 0 2 15 chain 24537 chr4 191154276 + 164157758 164158077 THE1A 353 - 0 324 107329 39 1 9 42 5 3 150 1 0 81 chain 22463 chr4 191154276 + 164170981 164171372 THE1B 368 - 0 366 118182 39 48 13 116 4 0 25 13 12 86 18 33 42 chain 4522 chr4 191154276 + 164178167 164178217 LTR1C 686 - 578 628 200532 50 chain 15310 chr4 191154276 + 164182944 164183134 MER47A 366 - 70 260 140464 190 chain 119677 chr4 191154276 + 164203728 164207069 L1PB1 5432 - 28 4303 31156 13 1 0 21 1 0 24 2 0 14 10 8 15 19 9 4 1 0 15 1 0 45 12 16 52 18 12 12 1 0 6 1 0 25 22 0 10 9 0 84 17 0 38 27 49 257 0 1 51 3 0 804 1 6 67 1465 2413 54 5 32 17 0 2 70 8 10 19 chain 16548 chr4 191154276 + 164211999 164212361 THE1D 372 - 0 372 136804 32 1 0 95 1 7 10 71 67 59 10 9 10 32 42 41 chain 21534 chr4 191154276 + 164219001 164219286 AluSp 311 + 5 291 122027 251 15 16 19 chain 22987 chr4 191154276 + 164224060 164224421 THE1C 375 - 17 375 115684 8 1 0 56 16 18 70 20 21 144 5 0 41 chain 25307 chr4 191154276 + 164228095 164228388 AluSc 308 - 4 297 103183 293 chain 8102 chr4 191154276 + 164236038 164236141 L1PA16 3655 - 71 171 170478 6 3 0 94 chain 180861 chr4 191154276 + 164289709 164292072 L1PA8A 6298 + 3910 6287 20913 287 0 1 246 13 14 19 0 2 53 14 16 537 0 1 4 7 6 393 2 1 91 0 13 7 14 1 61 1 0 120 0 1 220 1 0 4 0 1 182 23 32 64 chain 6709 chr4 191154276 + 164318203 164318323 Tigger6a 1079 + 12 137 179621 51 23 24 34 0 4 12 chain 83931 chr4 191154276 + 164320031 164321121 L1PA8 5853 + 4743 5849 41938 262 1 4 77 3 1 6 0 1 470 1 0 46 2 0 40 0 6 7 17 30 43 11 10 14 1 0 89 chain 140312 chr4 191154276 + 164330649 164332250 L1P1 4361 - 20 1623 26097 12 2 1 23 1 0 155 1 0 481 0 4 385 1 0 27 0 2 513 chain 15768 chr4 191154276 + 164333968 164334160 THE1A-int 1579 + 0 187 139061 44 4 0 132 1 0 11 chain 40863 chr4 191154276 + 164334160 164334607 L1PA2 6032 - 604 1051 68077 447 chain 52330 chr4 191154276 + 164334607 164335174 L1PA2 6032 + 5461 6028 57413 567 chain 117077 chr4 191154276 + 164346971 164348366 HERV9-int 5642 + 2480 4825 32102 135 1 2 366 0 1 26 7 942 60 0 1 390 0 1 115 0 5 287 0 6 8 chain 63699 chr4 191154276 + 164349268 164350041 LTR12 884 + 0 869 51141 69 0 41 221 0 47 341 1 9 141 chain 33811 chr4 191154276 + 164353084 164353460 L1PA4 6152 + 5751 6128 77924 257 0 1 119 chain 17137 chr4 191154276 + 164381882 164382119 L1PA7 6471 - 2 239 135214 136 20 20 81 chain 21719 chr4 191154276 + 164389788 164390037 L1PA3long 6157 + 5913 6155 121319 90 7 0 152 chain 7427 chr4 191154276 + 164405110 164405330 MLT1C 463 - 256 456 174598 11 5 9 16 0 3 32 1 0 4 64 51 49 18 7 6 2 0 12 chain 117066 chr4 191154276 + 164407737 164409320 THE1D-int 1627 - 0 1612 32106 287 12 4 39 0 3 9 45 26 9 0 44 559 3 4 45 16 14 173 1 0 248 0 10 121 0 1 16 chain 9588 chr4 191154276 + 164413724 164413832 Tigger3a 397 + 158 266 162653 108 chain 5872 chr4 191154276 + 164444443 164444536 MADE1 96 + 2 96 186450 35 14 15 44 chain 7711 chr4 191154276 + 164488195 164488295 L1PA7 6471 + 6368 6468 172857 100 chain 25036 chr4 191154276 + 164488602 164488961 THE1B 368 + 0 368 104615 169 1 0 29 8 6 10 0 4 10 16 24 116 chain 194382 chr4 191154276 + 164494481 164498118 L1PA3long 6157 - 15 3914 19641 927 1 0 760 38 329 109 15 2 32 78 61 146 14 15 8 0 2 13 1 0 21 165 170 18 117 120 48 206 210 18 6 9 195 5 6 11 222 219 15 11 13 5 2 0 22 54 58 28 67 61 52 29 29 23 25 14 130 chain 29062 chr4 191154276 + 164501950 164502253 AluYb8 318 - 15 318 88712 303 chain 77331 chr4 191154276 + 164526323 164527216 L1PA7 6471 + 5571 6466 44814 49 0 4 835 2 0 7 chain 7430 chr4 191154276 + 164537960 164538064 L1MA5 2750 + 2337 2439 174575 94 2 0 8 chain 128289 chr4 191154276 + 164549420 164550990 L1PA7 6471 + 4171 6466 28500 84 0 8 411 2 0 281 1 0 32 18 12 15 0 1 463 1 0 111 1 727 150 chain 546177 chr4 191154276 + 164553384 164559405 L1PA2 6032 + 0 6030 1923 256 1 0 597 0 1 397 1 0 4 0 1 1875 0 4 2047 0 4 509 0 1 334 chain 174738 chr4 191154276 + 164576531 164578791 L1PA10 4194 + 1905 4161 21504 203 0 1 407 1 0 4 0 1 89 1 2 44 3 0 15 0 4 287 1 2 167 7 6 82 0 1 134 8 5 7 0 1 77 0 2 166 5 1 85 0 1 383 1 0 22 2 3 6 1 0 3 3 0 34 1 0 11 chain 105460 chr4 191154276 + 164580412 164581721 L1PA8 5853 + 4552 5853 35381 454 0 2 77 15 15 84 8 5 375 1 0 44 2 0 74 1 0 8 1 0 53 1 0 17 1 0 93 chain 22787 chr4 191154276 + 164602608 164602963 THE1C 375 + 26 375 116649 49 37 28 22 3 0 17 1 5 38 1 2 17 0 1 170 chain 22027 chr4 191154276 + 164604278 164604617 THE1B 368 - 0 363 120112 125 35 45 22 8 7 110 0 15 39 chain 76591 chr4 191154276 + 164638151 164639020 L1PA4 6152 - 2 871 45168 456 5 3 5 0 2 403 chain 52929 chr4 191154276 + 164639021 164639618 L1PA4 6152 + 4707 5303 57063 271 1 0 325 chain 531325 chr4 191154276 + 164640185 164646298 L1PA5 6144 - 1 6144 4039 456 5 3 5 0 2 376 0 4 2132 1 0 6 0 1 580 0 2 195 0 4 381 0 1 1048 0 4 18 17 25 94 0 3 326 3 4 330 14 0 9 6 20 53 0 3 58 chain 8474 chr4 191154276 + 164651727 164651819 L1PA5 6144 - 6 98 168433 92 chain 39220 chr4 191154276 + 164658367 164658785 L1HS 6032 - 0 418 70430 418 chain 33010 chr4 191154276 + 164658785 164659137 L1HS 6032 + 5243 5595 79197 352 chain 4625 chr4 191154276 + 164692359 164692483 MER20 218 + 90 213 199351 36 57 56 31 chain 41474 chr4 191154276 + 164714692 164715155 LTR2 463 + 0 463 67318 463 chain 35009 chr4 191154276 + 164738888 164739265 L1PA3long 6157 + 5772 6149 76180 377 chain 61191 chr4 191154276 + 164753756 164754432 L1PA4 6152 - 14 689 52255 246 1 0 429 chain 35024 chr4 191154276 + 164754435 164754816 L1PA4 6152 + 5056 5437 76155 381 chain 17025 chr4 191154276 + 164755607 164755797 L1PA3long 6157 - 1 191 135526 190 chain 10448 chr4 191154276 + 164755797 164755909 L1PA3long 6157 + 5845 5957 158502 112 chain 3803 chr4 191154276 + 164791807 164791950 L1MA5 2750 + 2605 2723 210340 25 9 8 8 1 0 15 62 39 23 chain 5945 chr4 191154276 + 164813687 164813753 L1PA2 6032 + 5965 6031 185726 66 chain 2685 chr4 191154276 + 164814196 164814275 LTR40a 516 - 304 383 230386 16 23 22 19 6 7 15 chain 24871 chr4 191154276 + 164818936 164819237 AluY 311 + 10 307 105508 113 8 4 180 chain 41030 chr4 191154276 + 164843022 164843526 L1PA4 6152 + 5642 6152 67856 238 10 14 60 6 8 190 chain 2258 chr4 191154276 + 164870841 164870873 MER52A 1651 - 810 843 214916 26 2 3 4 chain 3701 chr4 191154276 + 164870873 164871020 MER52A 1651 - 737 855 211929 22 81 51 26 4 5 14 chain 30862 chr4 191154276 + 164880408 164881025 L1PA14 3548 + 2922 3456 82748 16 3 1 14 2 0 26 61 5 14 12 8 101 15 11 13 2 0 6 1 0 82 1 0 113 1 0 10 54 45 9 1 0 60 chain 40566 chr4 191154276 + 164893035 164893505 L1PA7 6471 + 5995 6465 68484 470 chain 88372 chr4 191154276 + 164900172 164901135 L1PA2 6032 - 0 963 40233 144 0 1 197 1 0 621 chain 53128 chr4 191154276 + 164901135 164901707 L1PA2 6032 + 4484 5056 56754 572 chain 11442 chr4 191154276 + 164915597 164915726 L1PA4 6152 + 6017 6146 154526 129 chain 17129 chr4 191154276 + 164952345 164952569 L1P3 4156 - 389 616 135233 57 1 4 166 chain 101520 chr4 191154276 + 164953992 164955470 L1PA8A 6298 + 4865 6167 36394 217 139 19 469 0 2 137 7 6 252 61 5 6 2 0 40 4 5 144 chain 19617 chr4 191154276 + 164971840 164972067 AluSp 311 + 38 264 128341 94 1 0 132 chain 96819 chr4 191154276 + 164975006 164976086 L1PA3long 6157 + 5075 6153 37603 53 0 1 688 5 2 334 chain 30227 chr4 191154276 + 164979040 164979426 L1PA7 6471 + 6076 6463 84114 230 9 10 147 chain 20220 chr4 191154276 + 164982630 164982843 L1PA3long 6157 + 5944 6157 126475 213 chain 91939 chr4 191154276 + 164985152 164986407 L1PA13 3608 - 86 1331 38985 4 1 0 18 20 12 22 1 0 18 2 0 7 2 0 45 2 0 7 2 0 54 7 6 56 2 0 109 0 11 21 1 0 209 1 4 282 2 0 360 chain 115632 chr4 191154276 + 164989365 164990905 LTR12C 1709 + 0 1709 32576 256 16 15 67 10 53 259 0 119 68 1 0 234 0 47 70 4 0 20 24 0 16 12 5 383 4 2 11 1 0 84 chain 33846 chr4 191154276 + 164994371 164994793 L1PA7 6471 + 6034 6464 77858 29 1 0 361 0 9 31 chain 16749 chr4 191154276 + 164994961 164995174 AluSc5 308 - 14 227 136260 20 0 2 111 1 0 36 1 0 44 chain 184402 chr4 191154276 + 164997464 164999686 L1PA7 6471 + 4230 6466 20550 137 2 3 155 0 4 139 0 4 137 0 2 111 0 1 698 1 0 512 1 0 31 0 4 152 1 2 88 1 0 56 chain 7383 chr4 191154276 + 165000000 165000081 L1PA5 6144 + 6062 6143 174885 81 chain 10503 chr4 191154276 + 165016909 165017064 L1PA17 2846 + 2537 2693 158236 59 8 9 45 1 0 9 0 1 33 chain 553384 chr4 191154276 + 165021900 165027930 L1PA2 6032 + 0 6031 1023 256 1 0 865 1 0 2032 0 1 1020 0 1 461 0 1 1394 chain 97045 chr4 191154276 + 165042918 165045247 L1MA1 4479 + 2473 4190 37550 15 67 68 47 2 0 64 9 8 17 0 1 77 6 4 29 12 11 52 1 0 56 616 28 8 1 0 27 2 0 72 29 0 80 1 0 6 0 1 13 2 0 15 7 3 72 23 16 126 3 0 89 0 8 30 3 0 128 1 2 69 1 0 7 0 1 16 2 0 16 1 0 70 2 1 14 7 5 14 1 0 6 9 57 25 1 0 5 6 3 119 5 4 27 2 0 22 0 1 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165263601 165263681 L1PA4 6152 + 6066 6146 174815 80 chain 555008 chr4 191154276 + 165271901 165277928 L1PA2 6032 + 0 6032 825 364 0 1 514 0 1 4964 0 3 185 chain 59228 chr4 191154276 + 165314329 165315007 L1PA5 6144 + 5461 6144 53265 659 0 5 19 chain 25190 chr4 191154276 + 165318622 165318991 L1PA8 5853 + 5491 5853 103797 73 1 0 37 5 2 4 0 1 71 1 0 12 14 13 36 2 1 19 6 5 88 chain 28120 chr4 191154276 + 165326246 165326587 L1PA7 6471 + 6121 6461 92571 188 1 0 152 chain 36175 chr4 191154276 + 165335475 165335961 L1PA16 3655 - 82 572 74669 9 0 1 131 1 0 142 1 0 58 10 15 134 chain 15503 chr4 191154276 + 165336603 165336799 L1PA8 5853 - 10 203 139880 83 1 0 17 1 0 63 2 1 29 chain 13894 chr4 191154276 + 165336799 165336985 L1PA8 5853 + 5458 5640 144937 59 2 0 17 4 5 25 1 0 44 2 0 32 chain 22775 chr4 191154276 + 165381657 165382018 THE1B 368 + 2 358 116704 167 1 0 22 21 26 59 15 7 23 14 13 39 chain 62862 chr4 191154276 + 165391307 165391988 L1PA2 6032 - 7 688 51504 681 chain 7073 chr4 191154276 + 165427562 165427643 L1PA7 6471 + 6386 6467 176929 81 chain 5026 chr4 191154276 + 165434972 165435028 L1PA3long 6157 + 6101 6157 194875 56 chain 241686 chr4 191154276 + 165438194 165441559 L1PA10 4194 - 45 3942 16686 32 3 0 24 1 0 164 0 1 68 0 4 121 0 2 120 0 1 188 30 580 87 0 1 42 0 2 37 8 13 418 1 4 10 0 4 16 13 1 73 10 15 152 1 0 432 1 0 144 6 8 849 66 64 69 1 0 8 7 0 13 5 0 13 8 6 10 1 0 7 72 62 10 5 3 19 chain 20822 chr4 191154276 + 165460753 165461132 THE1D 372 - 12 372 124537 68 32 17 51 70 64 129 0 2 29 chain 21492 chr4 191154276 + 165462782 165463047 THE1D-int 1627 - 1354 1627 122174 38 0 1 40 1 8 186 chain 419511 chr4 191154276 + 165465815 165470526 L1PA4 6152 + 1424 6151 9542 1011 4 16 805 0 1 4 1 0 2039 0 1 708 0 3 139 chain 557329 chr4 191154276 + 165474644 165480675 L1PA2 6032 - 2 6032 575 143 1 0 5887 chain 528678 chr4 191154276 + 165484290 165490396 L1PA4 6152 + 3 6143 4339 368 20 13 613 0 36 202 0 1 8 2 0 17 0 1 1227 0 1 48 0 1 1812 0 4 280 1 0 484 0 1 764 4 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640 5 6 208 1 0 327 0 4 19 12 4 167 1 2 194 0 3 237 10 6 151 0 1 380 0 1 75 72 5 86 10 25 23 2 1 35 0 1 356 21 32 342 10 0 5 7 0 169 0 2 191 15 0 131 5 0 8 chain 23058 chr4 191154276 + 165562720 165562984 AluY 311 + 36 301 115361 90 0 1 174 chain 10978 chr4 191154276 + 165569180 165569304 L1PA4 6152 + 6019 6143 156280 124 chain 484023 chr4 191154276 + 165570749 165576369 L1PA5 6144 + 7 6138 7587 82 0 525 832 9 6 49 4 0 1359 0 1 647 0 1 173 1 0 280 13 0 1313 8 15 6 3 0 5 0 1 836 chain 25170 chr4 191154276 + 165578992 165579304 LTR17 781 + 0 326 103905 44 0 10 248 0 4 20 chain 13152 chr4 191154276 + 165583799 165584145 LTR14A 344 + 0 344 147637 5 0 1 42 19 5 25 19 5 15 76 123 11 19 0 14 3 1 5 1 0 92 chain 183623 chr4 191154276 + 165588560 165590833 L1PA5 6144 + 2 3500 20616 119 0 14 19 12 24 570 15 16 45 17 0 13 0 17 131 0 2 197 9 0 1011 0 1205 115 chain 14402 chr4 191154276 + 165590833 165591004 L1PA5 6144 + 3502 3673 143202 171 chain 111571 chr4 191154276 + 165591009 165592298 L1PA5 6144 + 3676 5023 33787 661 0 58 112 1 2 143 1 0 371 chain 96265 chr4 191154276 + 165592298 165593396 L1PA5 6144 + 5032 6131 37742 962 0 1 136 chain 75097 chr4 191154276 + 165595914 165596896 L1P2 5180 + 1878 2846 45970 180 13 14 168 2 0 70 21 9 66 2 1 460 chain 163236 chr4 191154276 + 165597077 165599138 L1P2 5180 + 2 2093 22918 141 0 11 55 0 1 37 20 19 46 11 10 185 1 0 8 1 0 272 7 5 141 0 25 351 1 0 784 chain 25410 chr4 191154276 + 165602164 165602440 L1PA4 6152 - 12 288 102634 276 chain 11958 chr4 191154276 + 165606611 165606776 L1PA8 5853 + 5690 5853 152367 50 2 1 16 5 4 92 chain 347857 chr4 191154276 + 165609513 165613693 HERVL-int 5654 + 18 4258 11669 544 0 1 314 3 17 374 0 1 111 5 0 56 0 44 1091 0 1 139 13 10 58 0 5 640 0 1 409 0 1 423 chain 4924 chr4 191154276 + 165634924 165634981 MSTD 398 - 270 327 195993 57 chain 73929 chr4 191154276 + 165661536 165663363 MER11A 1151 + 6 1151 46551 79 0 91 116 10 6 135 10 11 94 0 1 133 17 18 145 17 48 37 0 1 46 1 0 16 0 1 75 814 10 82 chain 71259 chr4 191154276 + 165662469 165663254 L1PA4 6152 + 5355 6141 47823 683 0 1 102 chain 68443 chr4 191154276 + 165667912 165668663 SVA_F 1814 - 2 765 49069 17 3 0 193 0 15 538 chain 88383 chr4 191154276 + 165670980 165672207 HERVK11-int 2540 + 1044 2237 40229 21 2 0 65 1 0 43 28 24 10 19 19 27 12 1 35 20 0 120 0 4 73 0 1 99 0 1 143 6 1 104 1 0 189 1 0 78 5 9 99 0 1 26 chain 74863 chr4 191154276 + 165673401 165674401 MER11A 1151 + 8 1151 46083 47 0 99 76 5 9 53 10 6 145 0 1 94 5 6 84 0 5 51 5 6 80 8 9 42 8 41 56 0 1 64 0 1 167 chain 29964 chr4 191154276 + 165690563 165690896 L1PA4 6152 + 5808 6140 84924 90 1 0 242 chain 7015 chr4 191154276 + 165714639 165714981 MLT1A 405 - 61 405 177363 53 226 234 31 6 0 26 chain 3667 chr4 191154276 + 165743875 165743992 MER70A 477 - 0 118 212445 15 59 60 43 chain 3165 chr4 191154276 + 165759181 165759214 MLT1F 544 + 38 71 221645 33 chain 29571 chr4 191154276 + 165759279 165759589 AluYg6 310 + 0 310 86326 310 chain 8151 chr4 191154276 + 165774331 165774441 MER2 342 - 84 193 170220 105 1 0 4 chain 239196 chr4 191154276 + 165782463 165785140 L1PA4 6152 + 3464 6140 16817 92 0 2 1090 2 0 1250 2 1 241 chain 30717 chr4 191154276 + 165803765 165804110 L1PA4 6152 - 16 365 83005 213 0 4 132 chain 76019 chr4 191154276 + 165826665 165827635 LTR5_Hs 974 - 0 974 45469 103 20 18 19 8 15 67 8 0 7 4 12 77 1 0 171 0 1 317 1 0 167 chain 33161 chr4 191154276 + 165830891 165831380 L1PA8 5853 - 0 472 78966 92 2 1 16 5 4 34 7 0 13 0 6 8 10 9 60 8 4 42 1 0 155 8 0 28 chain 10279 chr4 191154276 + 165834431 165834541 L1PA5 6144 + 5884 5994 159240 110 chain 10511 chr4 191154276 + 165834542 165834680 L1PA5 6144 + 5997 6128 158198 34 1 0 25 0 1 7 7 0 64 chain 21185 chr4 191154276 + 165839520 165839774 AluY 311 + 38 293 123257 59 0 2 29 1 0 165 chain 47889 chr4 191154276 + 165851077 165851740 LTR12_ 688 - 1 688 60565 67 4 1 233 1 0 4 3 4 36 0 2 9 0 1 62 1 2 98 22 5 28 0 41 70 10 9 15 chain 36862 chr4 191154276 + 165856980 165857456 LTR2B 499 - 0 490 73713 182 1 0 193 3 22 33 3 0 55 1 0 5 chain 91157 chr4 191154276 + 165862442 165864390 L1PA8 5853 + 4454 5760 39245 134 1 2 6 1 0 19 308 0 128 11 5 129 18 6 62 0 1 61 0 2 161 19 25 88 11 9 191 319 1 80 1 0 46 2 0 50 0 1 16 13 11 47 7 6 19 chain 88551 chr4 191154276 + 165896521 165897534 LTR5A 1029 + 0 1029 40166 14 0 2 22 2 0 109 0 13 274 0 1 516 0 2 76 chain 21951 chr4 191154276 + 165901260 165901907 L1PA8 5853 + 5347 5663 120422 135 321 6 33 0 2 5 23 8 28 1 0 45 2 0 54 chain 11986 chr4 191154276 + 165901920 165902097 L1PA8 5853 + 5679 5853 152264 14 1 0 4 1 0 11 1 2 30 2 1 17 4 3 92 chain 78400 chr4 191154276 + 165911534 165912502 LTR5_Hs 974 + 0 974 44320 288 0 1 105 0 1 67 1 0 180 2 0 7 6 8 162 8 15 37 2 0 103 chain 79583 chr4 191154276 + 165916839 165917807 LTR5_Hs 974 + 0 974 43790 19 0 2 356 0 1 443 15 20 30 2 0 103 chain 296832 chr4 191154276 + 165917823 165922230 HERVK-int 6823 + 19 6520 13600 23 1 0 20 1 0 8 1 0 30 1 0 21 1 0 12 2 0 318 5 4 61 2 0 143 3 1 28 2 1 18 1 0 215 15 5 92 1 0 437 1 0 17 0 1 353 3 1 7 4 0 87 0 15 738 0 2255 19 1 0 55 316 0 498 0 288 58 1 0 36 1 0 46 2 0 78 3 2 43 0 4 4 1 0 8 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 173 101 9 2 0 12 1 0 14 3 1 13 7 6 22 18 13 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 chain 26358 chr4 191154276 + 165920578 165920886 AluSp 311 + 0 311 98582 91 0 3 217 chain 80182 chr4 191154276 + 165923104 165924068 LTR5_Hs 974 + 0 974 43514 19 0 2 196 0 2 510 0 3 89 17 22 28 2 0 103 chain 27502 chr4 191154276 + 165925884 165926182 AluYf4 310 + 1 299 94646 298 chain 150115 chr4 191154276 + 165940372 165942089 SVA_D 2077 - 0 2015 24598 338 4 14 321 0 99 75 0 1 9 0 2 116 0 186 25 0 40 217 40 0 572 chain 29557 chr4 191154276 + 165960668 165960975 AluYb8 318 + 0 307 86389 307 chain 7589 chr4 191154276 + 165965490 165965667 Tigger2a 444 - 245 443 173621 33 0 3 49 71 89 24 chain 26633 chr4 191154276 + 165965699 165966003 AluY 311 + 8 308 97539 115 2 0 4 2 0 181 chain 6524 chr4 191154276 + 165968515 165968621 MER30 238 + 125 229 181059 5 3 0 9 1 0 11 4 3 37 0 3 36 chain 43837 chr4 191154276 + 165972114 165972651 MER41A 554 + 1 541 64400 86 10 11 303 0 1 24 0 1 114 chain 4229 chr4 191154276 + 166009834 166009883 MER21C 908 + 40 89 204186 49 chain 4285 chr4 191154276 + 166038534 166038583 MER39 703 + 603 652 203411 49 chain 113140 chr4 191154276 + 166046136 166047653 LTR12C 1709 - 0 1709 33338 218 18 28 22 0 1 41 102 0 169 2 6 76 0 1 26 11 168 99 0 118 175 0 1 86 8 10 464 chain 4236 chr4 191154276 + 166046435 166046479 LTR12C 1709 - 208 252 189240 44 chain 25411 chr4 191154276 + 166068105 166068401 AluYc 301 - 5 301 102628 296 chain 16710 chr4 191154276 + 166069997 166070184 L1PA4 6152 - 0 187 136373 187 chain 97850 chr4 191154276 + 166077826 166079182 L1PB1 5432 + 3727 5103 37320 67 9 12 19 0 4 163 6 7 95 2 0 3 1 0 112 1 0 6 0 1 147 25 25 239 4 0 72 0 6 10 0 4 216 1 10 158 chain 154541 chr4 191154276 + 166086700 166088561 L1PA7 6471 + 4572 6470 24039 102 0 4 936 0 3 83 2 3 70 1 14 251 0 22 146 8 5 15 3 1 82 1 0 161 chain 2998 chr4 191154276 + 166098962 166098998 L1PA3long 6157 - 4 41 225082 32 0 1 4 chain 21172 chr4 191154276 + 166110149 166110481 THE1B 368 - 12 368 123299 106 42 52 26 1 0 114 1 16 42 chain 25498 chr4 191154276 + 166127184 166127489 AluSp 311 - 12 311 102228 25 4 0 142 2 0 132 chain 4544 chr4 191154276 + 166127745 166127800 MER5A 189 - 43 98 200300 55 chain 29225 chr4 191154276 + 166172754 166173060 AluYa5 310 - 4 310 87932 306 chain 6045 chr4 191154276 + 166173731 166173803 U4 144 + 0 72 184847 72 chain 5132 chr4 191154276 + 166185586 166185729 L1PB3 3668 - 56 186 193759 13 22 18 12 7 3 30 10 8 27 1 0 6 2 0 13 chain 447230 chr4 191154276 + 166186760 166192061 L1PA6 6164 - 282 5614 8840 57 7 6 63 4 6 43 0 2 307 0 1 400 0 1 628 1 9 108 0 1 603 0 1 340 1 0 116 0 1 586 3 0 141 7 12 101 0 1 367 2 0 147 1 2 175 6 0 752 0 4 89 1 18 225 3 2 17 chain 51906 chr4 191154276 + 166192061 166192818 L1PB3 3668 - 1072 1822 57681 55 1 2 49 42 39 77 0 1 6 7 3 21 2 1 19 10 13 161 0 1 38 5 0 264 chain 23314 chr4 191154276 + 166194594 166194946 THE1B 368 + 0 367 114133 44 35 50 14 1 0 31 0 4 29 2 1 27 2 0 167 chain 117946 chr4 191154276 + 166204339 166205886 THE1B-int 1605 - 0 1605 31823 401 3 30 51 23 26 186 0 3 453 2 27 49 0 3 253 10 7 116 chain 6749 chr4 191154276 + 166214379 166214457 U2 167 - 89 167 179328 78 chain 3660 chr4 191154276 + 166254874 166254922 MER33 330 - 8 68 212576 10 0 12 38 chain 7685 chr4 191154276 + 166272662 166272862 L1PBa 3878 - 3650 3797 173011 16 1 0 49 65 17 45 2 1 10 2 0 5 1 0 4 chain 22210 chr4 191154276 + 166274292 166274583 L1PA8 5853 + 5569 5853 119301 41 2 0 68 2 1 14 2 0 50 1 0 17 1 0 93 chain 32686 chr4 191154276 + 166294531 166294909 L1PA4 6152 - 9 387 79712 251 1 0 121 0 1 5 chain 3700 chr4 191154276 + 166321855 166321898 HY3 101 - 0 43 211934 43 chain 31000 chr4 191154276 + 166344798 166345137 L1PA3long 6157 - 0 340 82513 4 0 1 335 chain 3376 chr4 191154276 + 166357685 166357727 MER58A 224 - 138 179 217561 37 1 0 4 chain 4654 chr4 191154276 + 166358059 166358183 LTR48B 642 - 55 190 199026 4 1 0 15 8 7 11 1 0 28 31 45 25 chain 22611 chr4 191154276 + 166387673 166387956 AluSc5 308 - 15 297 117538 167 2 1 114 chain 13995 chr4 191154276 + 166387967 166388548 Tigger3b 1229 - 488 745 144598 34 13 12 11 0 1 28 1 0 82 358 35 54 chain 23673 chr4 191154276 + 166400889 166401160 AluY 311 + 28 299 112184 271 chain 38178 chr4 191154276 + 166413593 166414051 LTR2 463 - 0 463 71871 64 3 0 28 0 1 307 0 7 56 chain 28340 chr4 191154276 + 166442835 166443206 MLT2A1 477 - 92 477 91798 20 4 19 147 3 4 12 1 2 8 4 1 172 chain 25903 chr4 191154276 + 166468028 166468304 AluYa5 310 + 34 310 100422 276 chain 42919 chr4 191154276 + 166483017 166483654 L1PB2 3958 - 120 737 65515 63 1 0 26 2 0 67 2 1 64 1 0 75 0 2 88 4 0 12 3 1 61 6 1 16 1 0 54 2 0 14 4 5 14 0 5 10 10 0 10 0 1 27 chain 3575 chr4 191154276 + 166491638 166491676 L1PA8A 6298 - 1798 1836 214059 38 chain 143083 chr4 191154276 + 166491680 166493440 L1PA8A 6298 + 4524 6287 25642 286 0 1 28 0 5 446 4 3 5 0 1 127 0 1 67 0 1 633 7 8 50 6 0 101 chain 26889 chr4 191154276 + 166505174 166505473 L1PA5 6144 + 5844 6144 96671 152 0 1 147 chain 61338 chr4 191154276 + 166514141 166514918 MER4E1 777 - 7 777 52181 224 8 5 75 8 4 69 0 1 375 1 0 17 chain 43663 chr4 191154276 + 166528548 166529288 L1PA11 4918 - 355 1053 64612 9 1 0 14 81 65 68 2 0 13 2 1 65 5 0 120 19 0 81 14 20 6 6 0 40 0 1 87 1 0 23 2 3 50 1 2 30 chain 22756 chr4 191154276 + 166540042 166540340 L1PA10 4194 + 3823 4150 116799 168 3 35 89 4 1 34 chain 3102 chr4 191154276 + 166550819 166550852 MLT1C 463 - 358 391 222894 33 chain 10554 chr4 191154276 + 166555380 166555519 L1PBa 3878 + 805 945 158028 95 7 8 37 chain 269353 chr4 191154276 + 166556859 166560921 L1PBa 3878 + 29 3733 15214 10 2 0 8 4 1 12 3 0 3 1 0 15 30 23 16 96 48 48 1 0 24 2 0 91 0 7 187 1 0 95 3 2 151 0 1 54 1 2 157 1 3 114 1 13 83 8 9 307 0 1 7 1 0 92 2 0 7 5 1 260 0 5 21 4 5 235 4 3 109 0 1 131 0 1 11 319 0 192 0 1 110 3 1 6 1 0 191 2 0 5 0 2 278 0 7 14 0 1 10 3 0 203 1 0 275 0 4 12 2 1 17 chain 21800 chr4 191154276 + 166561644 166561883 L1P1 4361 - 816 1055 121016 239 chain 30655 chr4 191154276 + 166561885 166562234 L1P1 4361 + 2948 3295 83108 74 1 0 149 1 0 124 chain 76997 chr4 191154276 + 166564532 166565477 L1PA4 6152 + 5240 6152 44970 49 39 0 239 4 0 289 1 2 73 0 1 221 0 1 24 0 7 6 chain 24984 chr4 191154276 + 166579315 166579690 Tigger2 2703 - 44 431 104891 112 2 0 5 5 7 37 1 9 89 18 22 106 chain 39182 chr4 191154276 + 166614315 166614816 L1PA4 6152 + 5704 6151 70485 266 55 1 180 chain 34946 chr4 191154276 + 166614818 166615334 Tigger3b 1229 + 332 850 76271 29 0 4 184 5 4 28 0 2 7 1 0 21 5 9 8 1 0 69 5 4 69 1 0 5 4 1 74 chain 4355 chr4 191154276 + 166615367 166615441 Tigger3 1187 + 856 931 202523 47 11 12 16 chain 40732 chr4 191154276 + 166648149 166648695 MLT2A2 560 - 0 558 68269 54 0 1 6 4 3 5 0 1 46 0 1 26 0 11 226 13 12 166 chain 30451 chr4 191154276 + 166651411 166651848 L1PA8 5853 - 593 1026 83530 13 0 1 17 1 0 53 10 7 30 0 3 36 7 6 85 2 0 21 2 1 160 chain 40618 chr4 191154276 + 166651848 166652394 L1PA8 5853 + 5288 5837 68409 34 0 2 240 1 8 38 2 0 68 1 0 9 7 6 51 2 1 15 1 0 77 chain 5062 chr4 191154276 + 166720227 166720414 LTR12C 1709 - 623 691 194517 23 119 0 45 chain 27707 chr4 191154276 + 166729633 166729987 THE1A 353 + 0 353 94014 109 2 1 243 chain 38395 chr4 191154276 + 166737331 166738095 L1PA11 4918 + 3911 4501 71580 276 2 0 25 10 6 50 1 5 56 1 0 2 4 0 17 164 4 36 23 19 60 13 11 10 1 0 13 chain 5765 chr4 191154276 + 166737795 166737898 L1PB1 5432 + 5308 5404 187477 19 8 5 14 2 0 24 1 0 21 1 0 13 chain 6143 chr4 191154276 + 166739778 166739870 L1PB1 5432 + 5332 5419 184046 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 533962 chr4 191154276 + 166740056 166746183 L1PA5 6144 + 3 6142 3707 135 0 2 1112 0 5 682 1 0 624 0 1 457 1 0 79 0 1 57 1 0 135 4 1 733 0 4 13 0 1 109 1 2 5 1 0 878 0 1 428 2 4 152 0 1 517 chain 8554 chr4 191154276 + 166752480 166752648 MER2 342 - 126 305 167995 81 47 58 40 chain 8186 chr4 191154276 + 166754657 166754759 L1PA5 6144 - 0 100 170040 5 2 0 95 chain 27473 chr4 191154276 + 166811055 166811428 THE1C 375 - 2 375 94736 24 1 0 61 4 0 101 9 10 38 0 4 135 chain 518333 chr4 191154276 + 166817085 166823875 L1PA7 6471 - 3 6465 5346 7 4 0 152 3 4 365 318 0 276 3 7 25 0 9 56 0 1 64 0 10 147 1 2 302 0 9 9 16 4 971 0 1 38 2 3 386 10 8 35 0 11 80 1 2 38 3 0 575 0 1 63 0 4 162 16 0 612 1 0 636 3 0 120 20 20 249 7 8 358 0 1 234 35 0 92 26 25 155 1 12 53 22 35 8 13 0 17 chain 3751 chr4 191154276 + 166868198 166868267 MLT1B 390 - 35 107 211121 14 9 12 11 0 1 19 1 0 15 chain 17746 chr4 191154276 + 166870667 166871015 THE1B 368 - 0 368 133577 71 0 13 31 91 97 39 11 12 105 chain 77825 chr4 191154276 + 166876983 166878039 MER11A 1151 - 9 1151 44608 158 0 1 11 1 0 35 1 2 14 0 1 58 44 27 150 0 1 146 1 2 82 23 26 100 0 2 32 4 0 66 1 0 74 0 99 55 chain 160733 chr4 191154276 + 166878870 166880622 L1PA3long 6157 - 4 1758 23233 174 0 2 1578 chain 6073 chr4 191154276 + 166883015 166883095 L1PA16 3655 + 1493 1574 184630 73 0 1 7 chain 71388 chr4 191154276 + 166887665 166888706 MER11B 1079 - 0 1069 47752 29 2 1 160 4 5 16 0 1 37 9 10 51 1 3 25 10 0 193 7 6 4 0 1 101 14 13 39 26 30 107 0 5 17 0 5 129 0 21 60 chain 28841 chr4 191154276 + 166895285 166895591 AluYa5 310 - 4 310 89714 306 chain 17825 chr4 191154276 + 166920165 166920385 THE1D-int 1627 - 1390 1613 133324 124 0 3 96 chain 3443 chr4 191154276 + 166971232 166971278 L1MB2 1706 - 12 57 216306 10 1 0 35 chain 21519 chr4 191154276 + 166973470 166973737 AluSg7 307 - 32 298 122076 145 1 0 121 chain 22227 chr4 191154276 + 166975570 166975815 L1PA2 6032 - 4 249 119219 245 chain 118634 chr4 191154276 + 166982843 166984184 L1PA5 6144 - 973 2314 31563 1341 chain 83899 chr4 191154276 + 166984184 166985148 L1PA5 6144 + 5175 6135 41908 789 5 0 130 0 1 40 chain 90154 chr4 191154276 + 167014214 167015238 LTR5B 1012 - 0 1012 39594 873 14 0 37 0 2 100 chain 30216 chr4 191154276 + 167047896 167048247 L1PA5 6144 - 2 353 84140 351 chain 61419 chr4 191154276 + 167070160 167071058 THE1C-int 1605 + 27 910 52143 45 0 1 57 0 56 252 89 18 215 1 0 14 8 9 4 1 0 212 chain 8355 chr4 191154276 + 167071058 167071162 THE1C 375 + 271 375 168652 104 chain 23723 chr4 191154276 + 167072955 167073259 AluYa5 310 + 10 297 111916 40 4 0 236 13 0 11 chain 3453 chr4 191154276 + 167081734 167081772 MADE1 96 - 58 96 216148 38 chain 13688 chr4 191154276 + 167086274 167086477 L1PA8 5853 - 0 201 145638 14 0 1 77 2 1 19 7 6 56 2 1 26 chain 20918 chr4 191154276 + 167086487 167086747 L1PA8 5853 + 5394 5652 124220 76 0 1 93 1 0 44 2 0 44 chain 9371 chr4 191154276 + 167105973 167106085 MLT1A0 366 + 253 365 163711 112 chain 30427 chr4 191154276 + 167108111 167108429 AluYb8 318 - 0 318 83612 318 chain 117870 chr4 191154276 + 167112151 167113714 THE1B-int 1605 + 0 1598 31844 32 0 1 4 2 1 394 0 25 196 19 23 414 32 33 396 1 6 73 chain 246157 chr4 191154276 + 167120365 167124243 MER61-int 3695 + 28 3649 16435 8 9 0 10 1 0 74 267 47 105 1 0 44 3 7 18 20 0 69 1 2 95 1 4 120 0 1 48 0 1 165 12 17 148 0 1 234 2 3 47 27 1 67 0 1 67 1 0 187 1 6 117 45 46 316 2 1 23 1 5 51 1 4 197 10 0 39 0 2 5 5 4 25 0 1 132 1 0 35 6 7 142 0 1 83 1 0 40 2 0 83 1 0 20 30 30 111 0 1 4 4 2 43 0 3 71 107 106 214 3 2 10 6 8 40 chain 18934 chr4 191154276 + 167120483 167120709 AluSc5 308 + 65 291 130278 226 chain 26179 chr4 191154276 + 167133735 167134063 THE1A 353 - 26 353 99279 207 1 0 120 chain 6705 chr4 191154276 + 167145158 167145488 MSTD 398 - 7 395 179644 26 52 49 56 105 167 25 52 51 14 chain 170126 chr4 191154276 + 167156292 167158171 L1PA3long 6157 - 1 1881 22035 1521 1 0 273 0 2 84 chain 143345 chr4 191154276 + 167158171 167159765 L1PA3long 6157 + 2670 4264 25541 1594 chain 2953 chr4 191154276 + 167159778 167159811 MER47A 366 - 298 331 226029 33 chain 4580 chr4 191154276 + 167162390 167162446 MLT1A 405 - 55 108 199875 5 3 0 48 chain 2602 chr4 191154276 + 167170242 167170270 MER33 330 - 36 64 231669 28 chain 13205 chr4 191154276 + 167172070 167172294 L1PA8 5853 + 5608 5853 147442 66 44 67 19 1 0 87 1 0 6 chain 479679 chr4 191154276 + 167187087 167192740 L1HS 6032 + 11 6021 7739 85 0 524 151 135 7 553 0 4 1384 0 1 202 0 1 913 1 0 386 0 4 682 2 0 130 0 1 918 47 0 64 chain 49198 chr4 191154276 + 167195213 167195777 LTR14C 587 + 0 587 59598 239 0 23 325 chain 25895 chr4 191154276 + 167224517 167224894 L1PB2 3958 + 110 477 100462 28 2 0 35 3 0 7 1 0 47 1 0 3 2 0 25 6 5 217 chain 3629 chr4 191154276 + 167242657 167242700 MADE1 96 + 49 92 213173 43 chain 30417 chr4 191154276 + 167243348 167243790 MLT2A1 477 - 0 475 83657 8 0 4 27 9 1 11 4 42 86 1 0 4 0 1 89 0 1 23 0 1 10 5 2 37 1 0 6 1 2 120 chain 10066 chr4 191154276 + 167251679 167251811 L1PA8 5853 - 0 130 160241 93 1 0 19 2 1 17 chain 253450 chr4 191154276 + 167251907 167255352 L1P3 4156 - 706 4154 16059 596 0 1 76 0 1 51 3 4 76 0 1 8 5 0 144 0 2 10 0 1 36 1 0 4 4 24 36 0 1 249 0 2 377 1 0 113 0 5 6 24 19 201 0 4 236 4 0 227 33 17 509 7 4 8 23 0 8 19 28 44 1 0 28 43 57 234 chain 8628 chr4 191154276 + 167268877 167268984 MER11B 1079 + 942 1049 167600 107 chain 399555 chr4 191154276 + 167291656 167296513 L1PA6 6164 - 4 6164 10113 199 0 8 283 1 0 636 0 1 64 1 3 309 0 5 689 0 1 268 1 0 15 0 1 402 0 2 84 0 1 4 0 1 592 0 1 99 0 1 166 4 1 69 7 1238 140 0 6 274 0 4 83 2 1 101 39 46 186 0 37 139 chain 108963 chr4 191154276 + 167317948 167319171 L1PA4 6152 - 1 1218 34448 189 1 0 652 0 4 4 0 1 356 10 0 11 chain 22124 chr4 191154276 + 167323888 167324168 AluY 311 + 0 287 119682 42 6 7 15 0 5 57 0 1 160 chain 157525 chr4 191154276 + 167369076 167370830 L1HS 6032 - 0 6028 23659 1481 0 4274 273 chain 116856 chr4 191154276 + 167375147 167376671 THE1B-int 1605 + 45 1605 32176 247 6 4 136 24 49 114 6 5 236 5 19 750 chain 26530 chr4 191154276 + 167376671 167377026 THE1B 368 + 0 368 97931 44 6 21 107 4 3 8 0 1 8 2 0 176 chain 551098 chr4 191154276 + 167384464 167390497 L1PA2 6032 + 1 6032 1297 525 4 0 3166 0 1 536 0 4 1779 1 0 14 2 0 6 chain 317881 chr4 191154276 + 167442252 167445924 HERVH-int 3825 + 0 3824 12680 479 0 114 10 26 57 96 6 9 13 1 2 128 7 8 1846 1 0 666 0 1 81 2 4 310 chain 28441 chr4 191154276 + 167447181 167447576 LTR7 482 + 0 476 91414 69 8 46 109 9 41 49 0 10 41 1 2 109 chain 23273 chr4 191154276 + 167453911 167454249 THE1B 368 + 0 368 114333 172 1 0 28 18 50 56 7 6 56 chain 24739 chr4 191154276 + 167475653 167475927 L1PA2 6032 + 4902 5176 106225 274 chain 78326 chr4 191154276 + 167475927 167476779 L1PA2 6032 + 5180 6032 44362 852 chain 60818 chr4 191154276 + 167478276 167479294 L1MA1 4479 - 328 1322 52420 9 1 0 17 3 4 14 2 0 29 7 6 62 0 1 54 3 0 9 7 6 81 58 60 36 30 25 18 2 0 4 0 1 196 2 0 109 2 3 18 4 0 126 4 0 12 2 1 72 4 0 21 chain 566274 chr4 191154276 + 167491128 167497159 L1HS 6032 + 0 6032 134 74 0 1 5957 chain 7360 chr4 191154276 + 167566209 167566303 MSTB1 431 - 2 97 175034 10 0 1 84 chain 11581 chr4 191154276 + 167570070 167570257 L1PA10 4194 - 1239 1428 153973 13 0 3 51 25 24 78 0 1 4 1 0 15 chain 24318 chr4 191154276 + 167622602 167622902 AluY 311 + 5 303 108551 235 2 0 63 chain 27988 chr4 191154276 + 167623184 167623552 L1PA10 4194 - 33 407 93045 10 2 1 15 1 2 17 3 0 212 0 3 80 0 6 28 chain 39626 chr4 191154276 + 167637275 167637726 LTR7 482 + 0 482 69852 263 1 32 187 chain 301594 chr4 191154276 + 167637728 167641495 HERVH-int 3825 + 0 3825 13340 272 0 4 56 0 1 199 5 0 38 1 0 10 1 0 24 28 0 5 86 0 21 4 1 7 20 0 17 4 3 62 21 0 9 2 1 49 1 0 444 15 0 462 4 31 732 3 0 672 8 218 172 2 4 311 chain 39975 chr4 191154276 + 167642754 167643205 LTR7 482 + 0 482 69352 264 0 31 187 chain 69289 chr4 191154276 + 167659622 167660382 L1PA3long 6157 - 0 760 48687 760 chain 510629 chr4 191154276 + 167664640 167670798 L1PA5 6144 + 1 6144 6107 112 13 27 797 36 11 224 25 16 245 2 1 856 26 28 424 4 0 129 0 7 284 1 2 2123 1 0 88 0 1 768 chain 564353 chr4 191154276 + 167677050 167683059 L1HS 6032 + 25 6032 226 49 0 1 601 4 0 4316 0 1 1039 chain 529123 chr4 191154276 + 167685348 167691475 L1PA5 6144 - 5 6141 4284 145 13 13 232 0 1 446 0 1 140 0 3 2843 0 1 320 0 1 114 0 1 1149 1 0 479 10 11 83 0 1 152 chain 16819 chr4 191154276 + 167714496 167714718 MER30 238 - 1 238 136068 112 3 18 107 chain 17248 chr4 191154276 + 167746561 167746809 L1PB2 3958 + 3580 3825 134931 37 1 0 62 8 7 67 2 0 22 1 0 43 0 2 5 chain 20679 chr4 191154276 + 167756877 167757151 AluSp 311 + 0 276 125036 23 0 9 100 1 0 5 11 5 134 chain 102655 chr4 191154276 + 167771606 167772785 L1HS 6032 + 2 1180 36089 254 1 0 924 chain 61449 chr4 191154276 + 167772785 167773456 L1PA3long 6157 + 5484 6155 52133 671 chain 273309 chr4 191154276 + 167784037 167787617 L1P2 5180 + 1617 5178 15001 337 0 1 32 31 5 280 5 4 51 1 0 67 5 9 369 14 18 271 5 4 134 10 11 6 1 0 76 0 1 229 4 3 317 0 2 234 0 1 93 16 17 509 1 2 25 2 1 361 1 0 49 1 0 38 1 0 4 chain 18052 chr4 191154276 + 167805291 167805533 AluYk4 311 + 69 300 132725 180 1 2 32 10 0 11 2 0 6 chain 38352 chr4 191154276 + 167811826 167812298 L1P3 4156 - 1109 1583 71641 43 0 3 249 0 1 120 0 2 28 4 0 28 chain 6270 chr4 191154276 + 167838504 167838575 THE1D 372 + 1 72 183004 71 chain 95026 chr4 191154276 + 167869836 167870898 L1PA3long 6157 - 4345 5410 37964 618 1 4 443 chain 391479 chr4 191154276 + 167870899 167875237 L1PA3long 6157 + 1805 6149 10406 674 0 1 779 0 4 2740 2 1 5 0 2 138 chain 10507 chr4 191154276 + 167887086 167887331 L1MC1 2226 - 103 338 158221 20 2 0 10 53 46 55 2 0 12 7 0 8 4 13 43 1 0 28 chain 29335 chr4 191154276 + 167896514 167897144 L1MA3 4352 - 0 588 87369 24 4 0 14 16 15 11 11 9 15 8 6 22 4 0 14 12 18 9 1 0 7 6 7 44 78 44 194 1 0 44 29 29 62 chain 2803 chr4 191154276 + 167902310 167902474 MER52A 1651 - 671 872 228691 22 48 147 20 62 0 12 chain 6295 chr4 191154276 + 167911477 167911556 L1PA2 6032 + 5955 6032 182845 71 2 0 6 chain 433878 chr4 191154276 + 167976464 167981312 L1PA3long 6157 + 0 6157 9218 440 1 2 522 0 18 1789 4 5 21 0 1288 1900 0 1 171 chain 61533 chr4 191154276 + 167992400 167993097 L1PA6 6164 - 6 721 52099 384 0 18 313 chain 21826 chr4 191154276 + 168013146 168013416 L1P3 4156 + 0 269 120915 251 2 1 17 chain 46225 chr4 191154276 + 168014461 168015012 L1PA7 6471 - 16 567 61827 12 1 2 310 1 0 227 chain 183641 chr4 191154276 + 168066791 168069114 L1PA7 6471 + 2136 6464 20615 129 1 0 375 0 1 588 1 2 306 5 5 133 1 2 108 0 3 92 1 2000 251 0 1 172 19 20 4 1 0 136 chain 5753 chr4 191154276 + 168076983 168077136 L1PA8 5853 + 5701 5853 187615 39 24 22 26 35 0 10 3 39 16 chain 229882 chr4 191154276 + 168080616 168083200 L1PA4 6152 + 3563 6150 17312 1120 0 1 203 0 1 109 4 0 190 0 1 116 0 4 842 chain 47324 chr4 191154276 + 168085589 168086269 L1PA8 5853 - 0 676 60953 15 1 2 75 2 1 19 2 1 52 2 1 5 1 0 71 5 3 44 1 0 6 0 1 11 23 24 345 chain 35782 chr4 191154276 + 168086275 168086703 L1PA8 5853 + 4758 5189 75159 249 0 2 168 0 1 11 chain 6759 chr4 191154276 + 168128897 168128972 L1PA4 6152 + 6017 6092 179252 75 chain 4801 chr4 191154276 + 168128973 168129033 L1PA4 6152 + 6092 6152 197346 60 chain 28645 chr4 191154276 + 168132233 168132603 THE1B-int 1605 + 1234 1605 90538 74 2 3 151 1 0 5 0 1 137 chain 21522 chr4 191154276 + 168132603 168132946 THE1B 368 + 0 368 122068 40 0 15 122 1 0 21 35 45 21 5 6 98 chain 26050 chr4 191154276 + 168183251 168183531 L1PA3long 6157 + 5019 5299 99827 280 chain 78389 chr4 191154276 + 168183538 168184395 L1PA3long 6157 + 5300 6157 44329 857 chain 41698 chr4 191154276 + 168189331 168189880 MER41A 554 + 0 554 67028 87 5 6 400 4 8 53 chain 295059 chr4 191154276 + 168191460 168194745 L1PA3long 6157 + 2864 6157 13700 609 0 1 472 0 1 629 0 3 21 0 1 785 0 2 769 chain 547317 chr4 191154276 + 168197290 168203312 L1PA2 6032 - 4 6032 1792 1798 0 4 409 0 1 3074 1 2 293 0 1 189 1 0 257 chain 405037 chr4 191154276 + 168205180 168210799 L1PA8A 6298 - 25 5318 9947 47 9 2 258 6 7 449 5 6 14 2 1 494 0 13 7 7 0 156 1 0 275 11 12 95 5 4 172 0 1 218 0 4 153 8 9 8 2 0 6 2 4 440 312 2 61 4 3 33 9 13 247 1 2 82 0 2 407 1 11 18 6 5 22 33 0 109 5 3 125 4 5 262 1 0 564 1 4 214 3 2 79 7 1 28 0 3 131 chain 3453 chr4 191154276 + 168231285 168231323 L1ME3A 1206 + 451 489 216155 38 chain 29705 chr4 191154276 + 168237315 168237816 L1PA15 4387 - 21 507 85809 10 1 0 18 17 12 11 3 1 44 6 3 50 1 0 9 4 0 23 1 0 46 18 22 11 6 5 168 1 0 53 chain 540400 chr4 191154276 + 168264677 168270707 L1PA3long 6157 - 7 6153 2755 131 1 0 120 0 1 594 0 4 599 1 0 669 0 1 842 0 1 2192 29 11 81 0 128 622 0 1 149 chain 4390 chr4 191154276 + 168286629 168286695 L1PA4 6152 - 0 59 202081 6 4 0 10 3 0 43 chain 24252 chr4 191154276 + 168298289 168298588 AluSp 311 + 4 304 108930 207 1 2 91 chain 111625 chr4 191154276 + 168319112 168320352 L1PA3long 6157 - 0 1251 33768 149 0 1 77 0 2 620 0 1 4 0 3 8 0 4 382 chain 17285 chr4 191154276 + 168324830 168325034 L1PA4 6152 + 5939 6143 134820 204 chain 21884 chr4 191154276 + 168357216 168357607 LTR7 482 - 38 482 120690 138 0 1 9 109 158 34 7 10 94 chain 287768 chr4 191154276 + 168358773 168362227 HERVH-int 3825 - 0 3825 14173 225 3 8 174 19 347 599 0 6 750 4 31 462 15 0 441 0 3 13 0 2 7 0 1 59 1 0 41 1 38 14 28 0 24 1 0 10 1 0 38 5 0 43 2 0 96 11 15 155 0 11 212 chain 9470 chr4 191154276 + 168362229 168362334 LTR7 482 - 0 105 163215 105 chain 40860 chr4 191154276 + 168364260 168364808 MLT2A2 560 + 0 560 68082 194 1 4 192 14 23 147 chain 34471 chr4 191154276 + 168401259 168401695 THE1C-int 1605 + 1168 1604 76956 436 chain 131575 chr4 191154276 + 168409376 168410878 L1PA5 6144 - 1061 2570 27724 60 0 1 721 0 7 176 0 1 447 3 0 46 0 1 49 chain 91631 chr4 191154276 + 168410887 168411967 L1PA5 6144 + 5061 6144 39078 233 1 0 7 0 1 181 0 3 423 0 1 197 1 0 37 chain 91237 chr4 191154276 + 168416118 168417211 MER11C 1089 + 0 1073 39220 592 7 8 16 0 2 95 0 3 116 26 0 241 chain 1203 chr4 191154276 + 168459673 168459851 L1PB1 5432 + 5118 5281 153385 20 1 0 8 20 15 6 2 0 53 2 1 16 6 0 44 chain 100046 chr4 191154276 + 168459859 168461194 L1PA8 5853 + 4538 5853 36765 42 9 13 266 0 1 146 1 3 385 40 0 164 8 7 38 7 5 70 2 1 57 0 17 7 2 1 30 1 2 60 chain 473 chr4 191154276 + 168461337 168461407 L1PB1 5432 + 5332 5398 153385 14 2 0 24 1 0 21 1 0 7 chain 24759 chr4 191154276 + 168463542 168463828 AluY 311 + 10 296 106113 286 chain 51186 chr4 191154276 + 168467638 168468344 L1PA8 5853 - 0 698 58199 89 5 4 19 2 1 47 2 1 13 2 1 70 2 0 44 1 0 150 1 0 259 chain 97263 chr4 191154276 + 168479700 168481178 L1PB1 5432 - 19 1469 37494 9 1 0 13 1 0 6 0 1 14 1 0 21 64 49 4 1 0 15 1 0 44 21 19 51 2 0 9 19 14 4 1 0 26 3 0 11 5 4 180 6 7 93 18 15 178 10 0 40 0 2 25 1 2 29 0 9 139 2 0 52 0 7 358 chain 43963 chr4 191154276 + 168496088 168496650 LTR22 571 + 0 571 64247 37 0 11 34 1 0 170 2 1 318 chain 96774 chr4 191154276 + 168498573 168499827 MER4-int 2692 - 1432 2686 37626 82 0 1 80 1 0 178 0 1 490 2 1 48 2 0 258 2 3 6 0 5 64 2 1 6 2 0 25 1 0 5 chain 15227 chr4 191154276 + 168503178 168503379 LTR12C 1709 + 773 1037 140697 31 1 0 4 0 62 79 0 2 86 chain 30124 chr4 191154276 + 168504642 168505100 MER4A1 472 - 1 472 84401 196 58 80 177 9 0 18 chain 162114 chr4 191154276 + 168551173 168553106 L1PA7 6471 + 4538 6468 23045 1083 1 0 585 8 7 94 2 1 160 chain 25222 chr4 191154276 + 168579984 168580339 THE1B 368 - 2 368 103629 75 3 0 113 0 1 4 2 1 54 6 7 33 2 0 23 0 15 40 chain 22405 chr4 191154276 + 168581913 168582201 THE1B 368 - 0 284 118464 77 3 0 113 7 6 88 chain 9319 chr4 191154276 + 168584149 168584305 7SK 245 + 13 240 163959 92 33 104 31 chain 28117 chr4 191154276 + 168598304 168598604 AluYg6 310 - 10 310 92584 300 chain 77759 chr4 191154276 + 168629076 168629932 L1PA3long 6157 - 1809 2665 44592 856 chain 162687 chr4 191154276 + 168629932 168631723 L1PA3long 6157 + 4351 6149 22979 397 0 3 1351 0 4 43 chain 24948 chr4 191154276 + 168650813 168651448 THE1B 368 + 0 348 105065 44 0 15 92 299 0 17 1 0 23 3 1 156 chain 66818 chr4 191154276 + 168675442 168676204 L1PA4 6152 + 5378 6143 49722 6 0 1 424 3 5 329 chain 15653 chr4 191154276 + 168691763 168691935 L1PA5 6144 + 5962 6134 139419 172 chain 14510 chr4 191154276 + 168698358 168698529 L1PA5 6144 - 0 171 142853 171 chain 150153 chr4 191154276 + 168702154 168703977 L1PA7 6471 - 12 1842 24593 138 7 8 11 7 8 664 9 9 630 1 2 314 0 4 42 chain 6798 chr4 191154276 + 168750688 168750810 Tigger1a_Art 216 - 53 190 178972 58 10 23 29 6 8 19 chain 535414 chr4 191154276 + 168779034 168785054 L1PA3long 6157 + 0 6156 3534 36 0 1 28 5 0 65 1 15 9 13 0 595 0 1 22 4 132 1303 0 2 395 8 0 2512 0 15 175 0 1 849 chain 300234 chr4 191154276 + 168797862 168801511 HERVH-int 3825 + 0 3824 13412 20 15 16 239 1 0 58 1 0 155 0 58 24 1 0 10 1 0 24 28 0 15 1 0 12 29 25 41 1 0 57 2 1 24 2 1 60 0 3 383 15 0 460 3 9 165 0 19 334 1 0 88 0 1 329 0 143 446 1 0 234 0 1 369 chain 2210 chr4 191154276 + 168798467 168798491 HERVH-int 3825 + 669 693 216971 24 chain 135077 chr4 191154276 + 168815785 168818211 L1PBa1 4058 + 11 3028 27000 25 1 0 11 4 2 6 1 0 110 0 1 97 0 1 106 0 1 57 2 0 70 2 1 51 15 15 53 14 13 278 47 19 66 2 3 404 486 1 128 4 5 110 9 7 10 1 0 86 0 4 48 0 1 40 13 1120 18 7 5 44 chain 35462 chr4 191154276 + 168817207 168817680 LTR2B 499 - 0 491 75606 182 1 0 8 0 1 175 14 33 30 2 0 56 0 1 5 chain 30697 chr4 191154276 + 168832715 168833082 L1PA5 6144 - 2585 2952 83044 367 chain 209735 chr4 191154276 + 168833088 168835850 L1PA5 6144 + 3677 6131 18508 402 0 1 264 0 4 284 2 8 211 0 1 375 0 1 41 316 0 25 1 0 655 11 6 46 1 2 128 chain 27235 chr4 191154276 + 168843570 168843936 MLT2A1 477 - 92 475 95480 107 0 10 87 7 13 17 1 2 147 chain 30879 chr4 191154276 + 168844001 168844466 LTR7 482 + 0 482 82718 69 4 42 18 51 0 96 0 1 4 0 31 90 2 0 131 chain 287728 chr4 191154276 + 168844468 168848081 HERVH-int 3825 + 0 3825 14177 212 0 11 280 9 11 16 1 0 11 1 0 4 0 1 23 7 6 5 1 0 10 4 0 13 7 1 15 0 37 42 2 1 18 77 12 25 1 2 7 0 2 14 0 3 242 1 4 168 0 3 28 15 0 458 4 31 284 0 4 299 0 1 766 12 14 36 8 218 487 chain 2663 chr4 191154276 + 168845149 168845208 HERVH-int 3825 + 635 691 203972 9 21 18 29 chain 30005 chr4 191154276 + 168849364 168849777 LTR7 482 + 0 482 84790 69 8 46 110 5 36 76 1 2 5 1 0 3 2 0 39 0 2 94 chain 49028 chr4 191154276 + 168851865 168852479 PABL_A 660 + 0 660 59728 66 1 0 18 0 9 82 0 39 50 6 5 391 chain 36386 chr4 191154276 + 168853439 168853907 MER4A1 472 + 0 472 74381 28 5 9 435 chain 16372 chr4 191154276 + 168875084 168875414 THE1B 368 + 0 334 137277 58 37 37 74 1 0 29 49 54 54 2 0 5 0 2 21 chain 8596 chr4 191154276 + 168897891 168898097 L1PA13 3608 + 3216 3488 167753 24 3 1 32 2 0 5 0 1 16 0 1 16 27 100 18 25 21 14 1 0 23 chain 237664 chr4 191154276 + 168903184 168905980 L1PA5 6144 - 4 2797 16897 7 0 4 41 0 1 249 1 0 544 1 0 430 2 1 75 13 7 89 1 0 4 1 2 57 2 1 233 1 0 55 0 1 57 0 2 933 chain 6537 chr4 191154276 + 168905982 168906056 L1P1 4361 + 2795 2869 180946 74 chain 12552 chr4 191154276 + 168917078 168917269 L1M1 2793 - 98 286 150033 10 1 0 12 1 0 45 7 6 115 chain 33666 chr4 191154276 + 168925053 168925514 MLT2A2 560 - 0 468 78148 69 3 4 31 16 8 35 3 14 201 1 4 102 chain 38119 chr4 191154276 + 168939744 168940193 LTR7 482 - 0 482 71956 49 12 14 124 0 31 264 chain 27691 chr4 191154276 + 168968646 168969001 THE1A 353 + 0 353 94073 109 12 11 180 1 0 53 chain 121183 chr4 191154276 + 168969001 168970865 THE1A-int 1579 + 0 1574 30641 15 0 2 247 309 0 203 0 13 73 2 0 279 0 1 303 0 3 27 5 6 135 16 16 155 0 1 95 chain 298856 chr4 191154276 + 168988057 168991565 L1PA6 6164 + 2645 6162 13487 458 0 1 79 1 2 4 0 1 506 0 1 257 0 1 413 0 4 277 1 0 409 6 7 250 1 0 89 4 6 513 1 0 239 chain 6279 chr4 191154276 + 168991571 168991647 L1PA8 5853 + 5593 5667 182950 16 2 0 58 chain 22169 chr4 191154276 + 169069325 169069606 AluSg7 307 - 11 298 119501 24 15 20 120 0 1 122 chain 14505 chr4 191154276 + 169074424 169074661 MER107 203 + 0 203 142876 13 0 1 145 44 9 35 chain 84798 chr4 191154276 + 169081880 169083038 L1PA11 4918 - 414 1559 41595 16 5 4 10 10 8 54 9 7 11 8 7 28 6 8 23 1 0 24 11 7 601 1 0 36 2 0 286 1 0 15 chain 6594 chr4 191154276 + 169113934 169114012 LTR12F 595 + 0 79 180508 32 0 1 46 chain 28149 chr4 191154276 + 169115355 169115811 LOR1b 457 + 0 445 92465 24 8 18 102 1 0 15 31 0 19 19 28 85 4 6 148 chain 3080 chr4 191154276 + 169127792 169127826 HSMAR1 1287 - 1253 1287 223337 34 chain 111768 chr4 191154276 + 169134174 169135588 L1PA7 6471 - 2 1505 33734 398 3 4 110 1 0 253 0 1 82 2 0 49 3 116 146 0 5 280 29 0 5 1 2 52 chain 87039 chr4 191154276 + 169135589 169136996 L1P3 4156 + 2738 3834 40761 65 7 11 643 0 1 3 5 0 39 308 0 24 1 0 41 3 0 41 3 4 224 chain 8190 chr4 191154276 + 169147720 169147845 L1MA3 4352 - 38 159 170002 26 8 6 24 2 0 65 chain 49575 chr4 191154276 + 169161074 169161702 L1PA10 4194 + 3534 4161 59342 177 0 6 60 9 7 292 1 0 23 1 0 17 3 0 45 chain 28158 chr4 191154276 + 169163997 169164369 THE1B 368 + 2 368 92432 170 1 0 8 0 1 4 1 0 7 4 0 26 1 0 150 chain 3982 chr4 191154276 + 169166183 169166232 L1MB2 1706 + 1644 1694 207654 42 0 1 7 chain 21570 chr4 191154276 + 169181279 169181518 L1PA5 6144 - 12 251 121883 239 chain 23107 chr4 191154276 + 169198706 169198987 AluYk4 311 + 0 309 115109 104 0 28 177 chain 17724 chr4 191154276 + 169225154 169225512 Tigger3b 1229 + 201 602 133637 48 0 1 8 90 90 13 0 1 118 1 0 50 17 59 13 chain 4507 chr4 191154276 + 169234922 169234980 MER119 576 - 94 152 200710 58 chain 48502 chr4 191154276 + 169236573 169237168 L1PA8 5853 - 0 588 60109 93 1 0 17 1 0 53 1 0 11 2 1 70 2 0 44 1 0 299 chain 173304 chr4 191154276 + 169249172 169251315 L1PA8 5853 - 0 2353 21676 93 1 0 19 2 1 51 1 0 10 2 1 70 2 0 44 1 0 43 0 1 69 3 0 442 0 2 246 1 0 237 27 20 13 0 1 598 0 1 104 0 224 50 1 0 13 chain 13745 chr4 191154276 + 169256299 169256492 MER30 238 - 0 205 145452 36 9 6 69 4 19 75 chain 219213 chr4 191154276 + 169262607 169265211 L1PA5 6144 - 3097 5669 17933 733 2 1 205 0 1 570 0 1 366 9 0 218 25 0 446 0 1 30 chain 255187 chr4 191154276 + 169265211 169268159 L1PA5 6144 + 3192 6144 15974 51 0 3 345 0 1 1781 0 1 56 2 0 375 0 1 338 chain 5552 chr4 191154276 + 169272025 169272090 THE1D 372 + 307 372 189549 65 chain 15439 chr4 191154276 + 169272896 169273213 L1PA14 3548 - 3151 3458 140078 84 14 14 21 55 50 11 1 0 63 12 8 56 chain 123085 chr4 191154276 + 169288693 169290266 THE1B-int 1605 + 0 1600 30014 269 0 1 162 0 25 312 1 0 4 19 20 525 4 5 277 chain 8089 chr4 191154276 + 169351414 169351515 MSTA 426 + 325 426 170545 101 chain 19750 chr4 191154276 + 169352649 169352863 L1PA3long 6157 + 5943 6157 127959 214 chain 552136 chr4 191154276 + 169363140 169369189 L1PA2 6032 + 0 6029 1175 257 1 0 171 23 0 3132 0 1 4 1 0 2004 1 6 195 1 0 259 chain 35420 chr4 191154276 + 169370395 169370779 L1HS 6032 + 5642 6032 75653 8 0 6 376 chain 23699 chr4 191154276 + 169448319 169448595 AluSp 311 + 28 304 112037 276 chain 11188 chr4 191154276 + 169488759 169488930 L1PB4 2604 + 2379 2566 155476 7 12 0 34 0 29 103 2 1 13 chain 21936 chr4 191154276 + 169496356 169496702 THE1D 372 - 0 372 120476 96 0 1 29 3 10 15 33 37 50 1 5 54 8 18 57 chain 54149 chr4 191154276 + 169497392 169498013 L1PA4 6152 - 0 627 56264 13 0 3 50 0 2 183 1 0 88 0 1 141 0 1 145 chain 8327 chr4 191154276 + 169498013 169498103 L1PA4 6152 + 5425 5515 169235 90 chain 28043 chr4 191154276 + 169499407 169499783 THE1C 375 + 0 375 92843 190 12 11 90 0 1 58 1 0 25 chain 4489 chr4 191154276 + 169573634 169573684 L1PA6 6164 - 4 54 200914 50 chain 30016 chr4 191154276 + 169607372 169607758 L1PA8 5853 - 0 378 84752 93 1 0 19 2 1 49 1 0 12 2 0 70 3 1 46 1 0 87 chain 10579 chr4 191154276 + 169618852 169618981 MER85 139 - 0 139 157918 40 0 10 89 chain 97555 chr4 191154276 + 169624071 169625140 L1PA3long 6157 - 10 1078 37406 1046 1 0 22 chain 30650 chr4 191154276 + 169625140 169625477 L1PA3long 6157 + 4752 5089 83121 337 chain 24400 chr4 191154276 + 169636823 169637112 AluY 311 + 4 294 108071 122 0 1 167 chain 4534 chr4 191154276 + 169650061 169650111 L1PA16 3655 - 1876 1926 200420 50 chain 7321 chr4 191154276 + 169660440 169660557 L1MA4A 3247 - 175 291 175297 88 3 0 7 6 8 13 chain 12890 chr4 191154276 + 169671402 169671561 L1PA16 3655 - 128 287 148673 159 chain 56649 chr4 191154276 + 169683648 169684330 L1PA7 6471 + 5782 6464 54750 530 0 2 19 0 1 84 9 0 8 0 9 23 3 0 6 chain 5824 chr4 191154276 + 169687426 169687494 MER41A 554 + 398 466 186909 68 chain 31482 chr4 191154276 + 169720050 169720489 MER57A1 433 - 0 433 81673 30 5 0 119 10 4 161 13 18 101 chain 19417 chr4 191154276 + 169729724 169730082 THE1B 368 - 0 368 128900 41 1 0 22 0 4 58 71 76 32 18 16 5 0 3 63 0 1 47 chain 16056 chr4 191154276 + 169731812 169731987 AluYb8 318 + 135 310 138199 175 chain 4071 chr4 191154276 + 169744127 169744171 ORSL 269 - 1 45 206301 44 chain 7476 chr4 191154276 + 169768834 169768977 L1MA3 4352 - 0 150 174295 24 3 0 5 29 41 24 2 0 56 chain 26308 chr4 191154276 + 169776237 169776539 AluSc 308 - 6 308 98796 302 chain 38502 chr4 191154276 + 169777178 169777774 L1PA16 3655 - 77 681 71435 59 5 14 160 0 1 42 33 24 73 10 9 35 0 4 45 23 25 105 0 2 6 chain 5236 chr4 191154276 + 169806526 169806589 U6 107 + 21 84 192657 63 chain 7542 chr4 191154276 + 169810901 169811042 MER5A 189 - 44 189 173920 29 12 13 17 16 17 17 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191154276 + 170027504 170027574 MER30B 195 + 119 189 189063 70 chain 26190 chr4 191154276 + 170044763 170045056 AluY 311 + 3 296 99235 293 chain 15104 chr4 191154276 + 170062033 170062253 MER30 238 + 0 238 141017 20 13 39 49 9 1 129 chain 92365 chr4 191154276 + 170111419 170112778 L1PB 1623 + 98 1586 38852 4 1 0 10 1 0 5 1 0 52 4 1 17 1 0 4 16 14 64 4 3 64 0 1 59 1 0 22 2 0 67 1 0 531 0 182 113 4 0 135 1 0 7 7 6 25 1 0 5 3 0 12 4 0 7 69 45 22 2 0 11 chain 49142 chr4 191154276 + 170113476 170114423 L1PB1 5432 + 4655 5420 59639 59 1 0 296 7 9 59 4 8 17 155 0 11 1 0 24 1 0 8 1 0 10 2 0 3 2 0 10 3 1 49 1 0 17 1 0 44 1 0 16 3 0 6 16 6 19 25 20 10 1 2 11 1 0 19 5 4 11 1 0 16 chain 5039 chr4 191154276 + 170117389 170117449 MER6B 211 + 0 60 194738 60 chain 4240 chr4 191154276 + 170134031 170134081 L1MC1 2226 - 179 230 204011 26 0 1 24 chain 23085 chr4 191154276 + 170152446 170152726 AluSg 306 + 10 290 115217 280 chain 70758 chr4 191154276 + 170168909 170169804 L1PA8 5853 + 4957 5853 48035 50 1 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125 1 11 94 1 2 292 5 10 67 5 3 73 0 7 17 7 11 146 2 3 4 1 0 10 0 1 4 1 0 142 0 1 4 1 0 84 4 6 509 0 4 135 1 0 167 13 18 41 6 11 19 34 41 400 22 6 130 0 1 132 0 3 39 3 2 96 0 3 39 1006 0 284 0 2 212 0 4 37 1 4 216 0 2 140 3 4 250 0 1 473 0 2 67 0 2 426 0 9 239 1 0 263 1 0 342 0 1 158 13 23 30 14 15 185 chain 75844 chr4 191154276 + 170466207 170467036 L1PA2 6032 - 4 836 45409 286 0 3 543 chain 11987 chr4 191154276 + 170486769 170487026 L1MB8 1703 + 1429 1627 152258 4 1 0 132 8 6 16 71 15 25 chain 151484 chr4 191154276 + 170490608 170492323 SVA_D 2077 + 0 2056 24399 9 2 0 5 0 4 11 2 0 887 1 265 53 0 78 76 0 1 4 9 8 320 1 0 335 chain 2989 chr4 191154276 + 170496127 170496187 MADE1 96 - 53 95 225249 12 18 0 30 chain 15514 chr4 191154276 + 170536396 170536615 L1PA4 6152 - 11 245 139842 41 0 4 57 15 33 9 7 0 90 chain 6058 chr4 191154276 + 170554788 170554921 MER33 330 - 35 176 184758 15 1 0 12 0 1 29 18 20 22 11 17 25 chain 78976 chr4 191154276 + 170591035 170592001 L1PA8 5853 - 768 1732 44070 32 8 0 44 2 0 262 0 13 122 6 0 155 0 1 335 chain 57012 chr4 191154276 + 170592001 170592758 L1PA8 5853 + 5098 5847 54374 63 16 15 388 1 0 44 2 0 72 1 0 10 1 0 49 7 6 10 16 15 77 chain 122280 chr4 191154276 + 170599574 170601099 SVA_B 1603 - 6 1603 30287 430 0 4 8 0 1 200 2 129 75 3 0 77 0 3 109 40 0 486 50 15 16 14 29 15 chain 28594 chr4 191154276 + 170607160 170607484 L1PA4 6152 + 5827 6152 90761 174 0 1 150 chain 7406 chr4 191154276 + 170619328 170619437 L1MA3 4352 - 70 181 174733 8 0 3 13 2 0 56 0 2 21 1 0 8 chain 30930 chr4 191154276 + 170659929 170660273 L1PA5 6144 + 5773 6117 82632 344 chain 3931 chr4 191154276 + 170675843 170675890 MER20 218 + 0 47 208394 47 chain 13255 chr4 191154276 + 170676072 170676222 L1PA4 6152 - 1 155 147263 110 0 4 40 chain 92721 chr4 191154276 + 170699078 170700084 L1PA3long 6157 - 1363 2369 38686 1006 chain 123879 chr4 191154276 + 170700084 170701447 L1PA3long 6157 + 4790 6157 29739 517 0 2 225 0 2 621 chain 11318 chr4 191154276 + 170722137 170722277 MLT1B 390 - 11 151 155004 140 chain 5600 chr4 191154276 + 170724403 170724467 MER21A 919 + 16 80 189083 64 chain 28489 chr4 191154276 + 170740752 170741205 LTR3B_ 500 - 80 500 91233 14 7 9 45 6 4 13 34 0 33 1 0 106 1 2 32 7 7 4 0 1 150 chain 118747 chr4 191154276 + 170748925 170750389 SVA_B 1603 + 0 1603 31516 21 0 8 13 12 9 18 14 1 374 0 1 125 0 156 177 21 17 14 1 0 27 5 1 13 19 18 610 chain 103629 chr4 191154276 + 170759692 170760820 L1PA3long 6157 - 1 1129 35820 1128 chain 8396 chr4 191154276 + 170763077 170763182 LTR57 402 - 38 146 168874 96 0 3 9 chain 8670 chr4 191154276 + 170801313 170801448 MSTC 436 + 301 432 167357 29 0 6 50 15 5 41 chain 14387 chr4 191154276 + 170804284 170804487 MSTC-int 1625 + 1408 1622 143246 46 7 25 40 6 0 94 1 0 9 chain 26012 chr4 191154276 + 170808444 170808717 AluYf4 310 + 26 299 99970 273 chain 12522 chr4 191154276 + 170820185 170820415 THE1C 375 + 163 375 150151 23 67 49 140 chain 33514 chr4 191154276 + 170838395 170838857 LTR10A 586 - 0 460 78388 303 4 5 38 0 1 8 5 1 19 8 9 56 6 5 15 chain 48624 chr4 191154276 + 170840165 170840837 MER4E1 777 + 0 770 60014 24 2 0 24 1 0 382 0 7 16 1 62 24 13 16 40 0 1 24 7 34 101 1 3 12 chain 31879 chr4 191154276 + 170855939 170856539 MER4A 717 + 0 616 81048 27 7 3 13 0 1 204 12 25 15 4 1 81 0 40 59 74 57 17 6 0 27 31 23 23 chain 18327 chr4 191154276 + 170861234 170861611 THE1C 375 + 0 375 131994 87 3 4 16 46 46 18 64 61 143 chain 38642 chr4 191154276 + 170864825 170865289 LTR2 463 + 0 463 71233 57 0 4 48 0 1 26 13 7 320 chain 2642 chr4 191154276 + 170869105 170869152 MLT1F2 592 - 543 592 231150 13 6 8 28 chain 3825 chr4 191154276 + 170879067 170879179 MLT1G 592 - 136 344 209997 30 54 150 28 chain 34789 chr4 191154276 + 170882176 170882548 L1PA2 6032 - 2 374 76493 372 chain 25074 chr4 191154276 + 170882763 170883024 AluYg6 310 + 38 299 104440 261 chain 154938 chr4 191154276 + 170966872 170968713 SVA_D 2077 + 0 2062 23987 17 5 7 540 0 40 121 12 15 21 3 0 143 0 134 55 1 0 86 49 0 161 5 0 33 10 108 423 0 2 156 chain 2663 chr4 191154276 + 170967887 170967925 SVA_D 2077 + 1012 1052 79423 24 0 2 14 chain 10142 chr4 191154276 + 170971459 170971588 Tigger1 2417 - 1860 1989 159890 129 chain 2947 chr4 191154276 + 171003005 171003036 U2 167 - 136 167 226130 31 chain 17302 chr4 191154276 + 171012858 171013149 LTR12C 1709 + 778 1109 134783 36 1 41 122 0 41 68 48 7 16 chain 3481 chr4 191154276 + 171013149 171013191 LTR12C 1709 + 790 832 196378 42 chain 14273 chr4 191154276 + 171028274 171028457 MER50 708 + 500 682 143640 132 10 9 41 chain 9370 chr4 191154276 + 171037467 171037580 LTR8 732 + 0 113 163712 113 chain 25800 chr4 191154276 + 171037580 171037989 LTR7 482 + 0 482 100865 54 23 61 109 8 40 18 12 13 124 12 14 49 chain 288416 chr4 191154276 + 171038001 171041639 HERVH-int 3825 + 10 3825 14131 10 0 1 312 1 0 160 48 112 26 114 0 26 24 0 41 11 31 50 1 0 447 15 0 459 8 35 6 0 1 279 0 4 293 0 1 766 12 14 36 8 218 260 0 2 225 chain 9700 chr4 191154276 + 171048616 171048786 LTR12D 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0 19 0 81 160 0 37 318 0 6 260 17 23 17 chain 9232 chr4 191154276 + 171092734 171092911 THE1C 375 - 20 193 164386 93 54 50 30 chain 21982 chr4 191154276 + 171111343 171111657 LTR17 781 - 457 781 120306 132 14 13 84 4 16 22 1 0 57 chain 317304 chr4 191154276 + 171112129 171115918 HERV17-int 4347 - 117 4334 12712 270 1 2 243 0 4 160 10 11 47 0 5 1926 0 2 83 4 0 130 4 5 577 0 430 64 8 1 127 6 5 24 3 1 35 2 1 50 2 1 13 chain 37045 chr4 191154276 + 171117738 171118255 LTR17 781 - 0 526 73466 7 1 0 7 3 0 17 0 22 186 14 0 118 0 1 47 11 16 33 1 0 72 chain 31162 chr4 191154276 + 171124799 171125240 L1PA8 5853 - 0 433 82233 93 1 0 19 2 1 39 44 41 50 2 0 46 1 0 144 chain 2738 chr4 191154276 + 171127159 171127552 L1MA9 1812 + 1280 1638 229633 29 342 307 22 chain 509649 chr4 191154276 + 171128258 171134402 L1PA5 6144 + 0 6129 6193 135 35 49 18 0 1 4 1 0 225 8 9 504 2 1 66 1 2 149 54 46 81 3 1 142 3 0 779 7 0 30 0 2 41 44 16 5 0 1 977 0 1 120 0 6 925 0 8 283 1 0 209 0 1 17 4 0 437 0 4 834 chain 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1 0 6 38 37 17 chain 15774 chr4 191154276 + 171262147 171262430 L1PB4 2604 - 38 326 139042 22 2 0 28 9 11 5 2 0 77 7 13 32 2 0 21 0 1 32 13 15 31 chain 48073 chr4 191154276 + 171268269 171268828 LTR19B 566 - 3 566 60425 49 0 1 216 0 1 32 1 0 63 0 2 27 0 1 171 chain 93453 chr4 191154276 + 171275987 171277085 L1PA5 6144 - 49 1148 38436 411 1 2 686 chain 473525 chr4 191154276 + 171277085 171285155 L1PA2 6032 - 2 6022 7928 1275 4 0 1540 1909 0 352 13 12 4 0 1 82 0 1 38 8 12 667 1 0 571 16 12 224 75 76 11 0 5 12 96 87 109 6 5 97 25 0 59 173 45 14 7 14 126 0 1 320 44 43 48 33 45 4 0 1 107 chain 20391 chr4 191154276 + 171279956 171280188 L1PA2 6032 - 2868 3104 125922 23 0 4 209 chain 60281 chr4 191154276 + 171280190 171280907 L1PA2 6032 - 1138 1910 52692 220 0 57 431 2 0 64 chain 3097 chr4 191154276 + 171318997 171319035 MER20 218 - 16 54 222971 38 chain 113509 chr4 191154276 + 171323287 171324660 L1PB1 5432 - 804 2179 33221 642 1 0 30 1 0 133 0 1 84 0 2 115 1 2 30 0 1 132 1 0 203 chain 43104 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282 0 2 87 0 3 141 94 0 4 68 0 104 3 1 784 0 4 14 11 11 23 0 1 79 0 1 769 6 8 28 0 1 703 chain 8459 chr4 191154276 + 172233174 172233267 L1PA6 6164 + 2929 3022 141034 93 chain 6185 chr4 191154276 + 172233271 172233339 L1PA6 6164 + 3026 3094 141034 68 chain 36510 chr4 191154276 + 172254865 172255525 L1PA14 3548 + 2813 3444 74227 84 7 0 23 1 0 16 7 6 59 2 0 4 2 0 79 6 7 12 24 20 8 2 0 6 1 0 19 1 2 63 5 4 102 5 4 12 5 1 35 32 28 10 1 0 27 chain 4535 chr4 191154276 + 172256443 172256501 L1M1 2793 + 2628 2685 200401 46 1 0 11 chain 31526 chr4 191154276 + 172258681 172259031 L1PA5 6144 + 5792 6141 81601 167 1 0 182 chain 121475 chr4 191154276 + 172276796 172278330 L1P3 4156 - 17 1621 30543 24 2 1 9 2 0 8 3 2 98 5 62 208 6 0 188 0 1 441 0 4 137 0 9 50 0 1 6 0 4 187 0 3 66 0 1 94 chain 49163 chr4 191154276 + 172282765 172283380 PABL_A 660 - 42 660 59625 29 12 14 72 0 1 502 chain 70497 chr4 191154276 + 172308337 172309446 MER11A 1151 - 0 1151 48166 163 6 7 60 0 36 13 40 10 12 55 15 145 5 7 144 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388 0 4 115 1 0 8 5 7 124 11 12 305 0 1 128 24 25 204 5 6 181 9 20 353 0 3 31 21 18 67 26 16 12 1 0 6 5 0 11 1 0 8 0 2 18 2 0 13 63 36 15 3 1 20 6 5 4 1 0 9 2 0 7 24 18 6 3 0 15 chain 3796 chr4 191154276 + 172544645 172544692 MSTA 426 + 354 401 210440 47 chain 61474 chr4 191154276 + 172550664 172551413 LTR17 781 + 0 781 52124 120 1 10 197 1 0 353 0 2 18 0 22 59 chain 16200 chr4 191154276 + 172554211 172554464 AluSx 319 + 8 268 137751 142 10 18 41 29 28 31 chain 22631 chr4 191154276 + 172566836 172567159 AluY 311 + 0 311 117416 122 8 0 129 30 26 34 chain 44717 chr4 191154276 + 172579702 172580290 LTR66 600 + 0 600 63361 98 4 0 6 3 7 69 1 0 14 0 1 212 0 6 46 14 4 24 1 17 96 chain 18442 chr4 191154276 + 172614989 172615200 L1PA5 6144 + 5929 6140 131665 211 chain 23980 chr4 191154276 + 172624962 172625224 L1PA5 6144 + 5877 6139 110443 262 chain 4287 chr4 191154276 + 172638199 172638251 MLT1B 390 + 337 389 203377 52 chain 40540 chr4 191154276 + 172641543 172642076 MLT2A2 560 + 0 547 68534 191 13 16 196 1 12 132 chain 103218 chr4 191154276 + 172642475 172643845 HERVL-int 5654 - 30 5524 35945 69 2 1 123 0 1 300 0 4117 120 0 1 4 8 7 210 0 3 170 0 1 34 0 2 273 0 1 57 chain 347512 chr4 191154276 + 172679989 172685257 L1P2 5180 + 3 5178 11684 146 2 1 52 5 6 19 380 183 37 61 42 15 82 66 168 21 0 35 10 25 84 56 75 67 20 21 4 1 0 16 0 1 162 6 7 82 13 12 168 5 7 131 0 1 86 0 1 4 2 7 169 0 1 44 0 1 53 0 15 277 0 11 14 11 0 92 6 87 117 0 2 375 0 2 172 0 4 19 1 0 26 20 19 35 4 16 415 9 7 122 0 1 400 0 4 855 1 0 47 1 0 38 1 0 4 chain 2470 chr4 191154276 + 172692810 172692865 MER96B 391 - 195 249 233484 20 16 15 19 chain 11378 chr4 191154276 + 172719140 172719292 L1PA16 3655 - 68 217 154788 9 3 0 140 chain 335193 chr4 191154276 + 172720439 172724676 L1PA7 6471 - 33 4285 12021 38 0 1 179 0 2 5 8 7 176 4 5 401 0 3 122 18 10 493 5 4 507 1 0 6 0 6 6 6 0 424 8 9 101 24 13 31 7 0 98 18 44 170 0 1 23 0 4 52 1 0 11 6 2 216 0 1 166 2 6 110 4 13 472 0 2 65 6 0 247 chain 16866 chr4 191154276 + 172790797 172791135 THE1B 368 + 0 368 135924 105 18 19 24 49 47 5 1 0 9 2 35 62 23 22 40 chain 15420 chr4 191154276 + 172802577 172802797 MLT2A1 477 - 252 477 140135 21 1 0 5 5 4 20 2 7 25 0 1 48 1 2 92 chain 543619 chr4 191154276 + 172824282 172830305 L1PA3long 6157 + 0 6156 2252 152 0 1 623 0 128 1483 0 2 1913 0 1 1004 1 0 190 0 3 652 1 0 4 chain 49440 chr4 191154276 + 172840957 172841531 L1PA4 6152 + 5540 6141 59428 284 0 29 45 1 0 164 1 0 79 chain 12494 chr4 191154276 + 172876669 172876839 MER2 342 - 98 270 150265 135 5 4 23 0 3 7 chain 38651 chr4 191154276 + 172883379 172883910 MER41B 635 + 0 539 71224 123 5 6 68 7 17 133 4 0 160 1 2 30 chain 25577 chr4 191154276 + 172907263 172907616 LTR7 482 - 7 482 101837 185 0 1 25 8 40 60 7 96 68 chain 195786 chr4 191154276 + 172908876 172911278 HERVH-int 3825 - 0 2610 19518 225 0 2 198 0 1 61 8 218 39 33 35 457 0 1 4 1 0 366 1 2 436 0 1 97 1 0 212 1 0 246 7 0 9 chain 10414 chr4 191154276 + 172967466 172967584 L1PA6 6164 - 8 126 158626 118 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173457424 173458396 THE1B-int 1605 + 18 1605 50534 95 0 3 306 76 60 129 0 628 45 5 6 9 3 0 171 23 24 27 3 4 33 1 0 41 0 1 5 chain 5146 chr4 191154276 + 173463823 173463903 MER72B 755 - 669 746 193587 35 3 1 4 1 0 37 chain 3895 chr4 191154276 + 173473961 173474042 MADE1 96 - 0 96 208926 24 26 41 31 chain 29718 chr4 191154276 + 173482122 173482436 AluYb8 318 + 0 314 85772 314 chain 21494 chr4 191154276 + 173501922 173502211 AluSp 311 - 17 310 122163 7 13 0 88 0 17 23 0 1 26 1 0 131 chain 39186 chr4 191154276 + 173506403 173506915 L1PA8 5853 - 0 505 70479 92 2 1 16 1 0 53 15 13 70 2 0 46 1 0 214 chain 57544 chr4 191154276 + 173592114 173592981 L1PA13 3608 - 67 901 54215 9 1 0 11 6 0 3 1 0 16 6 1 10 11 8 12 4 3 20 2 0 4 2 0 48 2 0 5 1 0 56 1 0 62 2 0 113 1 0 24 18 7 232 0 1 12 0 4 96 0 1 76 chain 30268 chr4 191154276 + 173615289 173615701 L1PA8 5853 - 0 402 84018 5 2 0 88 1 0 19 2 1 45 4 3 13 2 1 70 2 0 43 3 1 113 chain 39479 chr4 191154276 + 173640849 173641705 MER41A 554 - 20 554 70049 59 3 8 106 0 1 194 6 12 100 334 0 54 chain 66596 chr4 191154276 + 173656924 173657983 MER11B 1079 - 16 1079 49831 13 1 0 164 0 1 59 0 1 22 5 6 19 45 37 21 3 10 37 94 93 33 23 24 83 14 13 66 0 2 25 0 2 332 chain 30427 chr4 191154276 + 173680968 173681286 AluYb9 318 - 0 318 83638 318 chain 23621 chr4 191154276 + 173693063 173693405 THE1B 368 - 0 368 112465 125 35 45 21 1 2 120 0 15 40 chain 13468 chr4 191154276 + 173710466 173710680 MER30 238 + 0 238 146457 13 20 27 67 7 24 107 chain 48476 chr4 191154276 + 173723323 173724297 PABL_B 668 + 0 643 60131 91 0 1 145 1 0 43 1 0 59 325 0 11 2 1 207 0 13 9 17 0 63 chain 33696 chr4 191154276 + 173783099 173783603 THE1B-int 1605 + 0 520 78099 112 54 0 161 0 6 107 5 68 4 0 1 61 chain 514704 chr4 191154276 + 173833401 173839536 L1PA5 6144 + 0 6132 5701 135 10 24 105 4 5 683 19 0 76 1 2 4 1 0 131 15 6 635 9 3 1171 1 3 518 0 2 1816 1 0 4 0 1 486 0 1 7 0 9 171 2 4 130 chain 28479 chr4 191154276 + 173843091 173843445 THE1A 353 + 1 353 91271 108 2 1 92 1 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6 37 33 12 1 0 98 2 0 178 0 1 100 290 0 133 1 0 65 5 0 72 15 16 84 0 1 231 9 13 138 0 1 36 0 1 4 15 14 44 0 1 178 0 1 18 0 4 60 3 4 160 0 14 45 18 16 75 7 17 212 11 4 265 0 3 134 0 2 156 1 0 6 0 10 15 1 0 110 2 0 38 372 0 25 1 0 60 7 5 22 3 1 17 2 0 7 2 0 20 1 0 18 0 7 8 chain 8762 chr4 191154276 + 174078669 174078825 L1MA3 4352 + 4174 4328 166855 28 0 2 31 4 0 25 2 0 22 14 11 23 0 5 7 chain 5186 chr4 191154276 + 174098350 174098415 MER5A 189 - 116 181 193184 65 chain 96382 chr4 191154276 + 174104642 174105793 SVA_B 1603 - 340 1603 37707 192 0 40 17 3 2 36 1 0 86 0 40 106 0 40 652 21 13 11 4 6 22 chain 15612 chr4 191154276 + 174115814 174115986 L1PA5 6144 - 22 194 139542 172 chain 96355 chr4 191154276 + 174140164 174141638 L1PB1 5432 - 23 1450 37714 5 1 0 12 1 0 22 3 2 20 26 22 18 16 6 22 2 1 42 1 0 16 2 1 35 15 17 9 2 0 3 2 0 12 1 0 10 1 0 20 41 15 83 0 2 18 0 1 197 1 0 93 5 7 70 3 0 226 9 5 9 1 2 137 0 5 148 1 0 74 0 1 39 chain 72275 chr4 191154276 + 174141658 174142452 L1PA3long 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203 46 0 506 0 4 200 0 1 106 0 2 70 0 1 161 1 3 69 12 11 136 0 1 250 0 2 476 0 3 111 0 1 324 0 1 147 0 15 395 4 0 399 chain 362536 chr4 191154276 + 174534414 174540521 L1PA6 6164 - 9 6164 11295 1 2 0 322 1 0 593 9 11 711 0 1720 354 1682 0 117 0 1 100 0 1 60 1 2 15 1 4 101 2 0 474 0 1 229 0 1 563 1 5 117 5 6 79 1 0 16 1 2 549 chain 71718 chr4 191154276 + 174549271 174550052 L1PA3long 6157 - 15 797 47600 208 0 1 573 chain 56920 chr4 191154276 + 174550052 174550679 L1PA3long 6157 + 4731 5358 54346 627 chain 22789 chr4 191154276 + 174554343 174554617 AluSc5 308 - 34 308 116638 274 chain 7069 chr4 191154276 + 174557405 174557484 L1PA3long 6157 + 6078 6157 176954 79 chain 100574 chr4 191154276 + 174560060 174561174 L1PA4 6152 - 1 1117 36608 154 0 1 109 0 1 851 chain 20987 chr4 191154276 + 174566743 174567222 L1MA5A 2387 - 12 440 123965 13 8 10 12 1 0 10 1 0 13 43 23 62 27 0 12 13 12 23 1 0 23 10 11 44 1 0 44 38 36 80 chain 12823 chr4 191154276 + 174584139 174584298 THE1D 372 + 202 362 148965 22 0 1 137 chain 63835 chr4 191154276 + 174589469 174590198 L1PA4 6152 - 0 726 51085 5 3 0 721 chain 45802 chr4 191154276 + 174594249 174594755 L1PA4 6152 - 0 509 62233 10 1 4 495 chain 12124 chr4 191154276 + 174595680 174595917 MER2 342 - 129 336 151715 124 49 35 16 16 0 32 chain 62773 chr4 191154276 + 174638202 174639150 LTR12D 1347 - 0 1347 51550 147 0 200 294 14 7 34 0 150 172 9 46 19 81 102 72 12 9 6 0 1 88 chain 246740 chr4 191154276 + 174639151 174642361 L1PA10 4194 + 934 4161 16412 202 0 1 559 1 13 182 0 2 260 2 0 226 9 0 231 0 2 18 0 2 39 0 4 58 0 1 222 3 0 175 39 38 200 12 25 322 0 3 198 6 3 161 7 6 29 3 0 34 1 0 11 chain 448325 chr4 191154276 + 174643967 174649578 L1PA7 6471 - 12 6468 8805 7 0 1 75 8 0 7 0 8 740 1 0 425 0 1 218 0 860 267 23 23 240 0 3 81 1 0 17 3 2 511 1 2 160 4 5 12 0 1 156 1 2 497 0 1 386 1 0 296 0 1 444 5 4 5 0 1 586 37 15 396 chain 121765 chr4 191154276 + 174660997 174662333 L1PA3long 6157 - 0 1340 30458 843 0 4 493 chain 43574 chr4 191154276 + 174662333 174662813 L1PA3long 6157 + 4301 4786 64715 252 0 6 112 1 0 115 chain 71269 chr4 191154276 + 174689436 174690239 L1PA4 6152 - 81 888 47817 769 0 4 34 chain 27317 chr4 191154276 + 174701962 174702274 L1PA4 6152 + 5845 6152 95213 295 3 0 6 2 0 6 chain 10208 chr4 191154276 + 174705787 174705944 L1PA8 5853 - 0 156 159574 92 2 1 19 2 1 25 0 3 5 3 0 5 0 1 4 chain 542039 chr4 191154276 + 174707058 174713195 L1PA4 6152 + 0 6146 2494 2615 36 41 521 1 0 1345 1 0 776 0 4 614 1 3 227 chain 3621 chr4 191154276 + 174720007 174720056 L1MA3 4352 - 344 392 213321 9 1 0 39 chain 17971 chr4 191154276 + 174740646 174740893 L1PA8A 6298 - 17 262 132935 42 0 1 45 11 9 61 2 0 59 0 1 27 chain 39176 chr4 191154276 + 174770495 174771042 MLT2A2 560 - 0 559 70495 55 1 2 5 1 0 73 14 25 45 11 12 342 chain 171367 chr4 191154276 + 174807669 174809857 L1PA10 4194 - 33 2253 21898 11 1 0 34 27 14 62 0 1 250 0 3 80 0 1 4 1 0 41 1 0 4 0 4 918 0 1 23 0 5 9 7 33 148 0 1 235 0 2 51 3 7 278 chain 42709 chr4 191154276 + 174813913 174814428 MER9a3 513 - 0 513 65765 18 1 2 106 8 1 72 0 4 310 chain 7691 chr4 191154276 + 174816052 174816146 MLT1A1 405 + 295 389 172986 94 chain 8258 chr4 191154276 + 174852737 174852833 L1PA5 6144 - 8 104 169631 96 chain 22423 chr4 191154276 + 174874856 174875138 AluSp 311 - 20 301 118363 170 1 0 111 chain 530571 chr4 191154276 + 174884107 174890182 L1PA5 6144 - 9 6144 4126 249 0 1 79 0 1 504 0 4 815 0 9 338 0 1 501 0 1 1437 0 2 21 0 34 83 0 4 1316 10 6 4 1 0 569 0 1 55 0 7 93 chain 9938 chr4 191154276 + 174919474 174919640 L1M1 2793 + 2453 2608 160884 39 0 4 10 16 0 74 5 6 22 chain 26261 chr4 191154276 + 174960708 174960984 AluYa5 310 + 34 310 98974 276 chain 32954 chr4 191154276 + 174967112 174967575 L1PA6 6164 + 5761 6160 79290 72 64 0 327 chain 124745 chr4 191154276 + 175012890 175014404 L1PA7 6471 - 1 1538 29467 12 1 0 176 0 1 581 0 2 76 2 0 188 0 15 9 0 7 246 9 10 214 chain 17858 chr4 191154276 + 175096948 175097189 L1PA7 6471 - 1 245 133216 12 0 2 138 11 12 80 chain 13471 chr4 191154276 + 175097191 175097362 MER41B 635 - 463 635 146446 45 1 2 125 chain 5914 chr4 191154276 + 175111254 175111331 HERVL40-int 1241 - 694 773 186063 27 1 3 49 chain 6002 chr4 191154276 + 175164653 175164733 MADE1 96 - 0 95 185220 50 0 15 30 chain 11144 chr4 191154276 + 175193372 175193549 MER2 342 - 28 206 155652 11 3 0 5 17 4 51 0 17 90 chain 143268 chr4 191154276 + 175215197 175216908 SVA_D 2077 - 2 1795 25602 674 10 0 13 24 0 54 0 78 126 0 100 45 49 0 38 11 0 30 2 1 233 1 0 401 chain 2162 chr4 191154276 + 175216143 175216170 SVA_D 2077 - 865 892 120443 27 chain 28761 chr4 191154276 + 175219321 175219625 AluYa5 310 - 6 310 90067 304 chain 36711 chr4 191154276 + 175227869 175228461 L1PA13 3608 + 2977 3541 73942 151 1 0 33 1 0 113 2 0 62 1 0 19 2 0 5 0 2 29 7 5 47 2 0 5 2 0 20 1 0 17 27 19 14 1 0 6 7 1 10 1 0 6 chain 19185 chr4 191154276 + 175236803 175237018 AluY 311 + 93 309 129572 39 0 1 176 chain 259654 chr4 191154276 + 175265838 175269324 L1P2 5180 - 1094 4586 15722 150 0 10 236 4 0 76 2 0 49 0 12 132 10 0 18 0 1 107 1 2 59 0 4 24 0 1 22 2 0 177 8 9 68 4 4 139 3 7 452 1 0 292 1 0 87 1 0 491 8 0 7 0 8 537 1 2 92 1 2 11 7 22 38 21 0 17 15 12 115 chain 25600 chr4 191154276 + 175284952 175285310 THE1B 368 - 0 368 101728 68 2 0 114 21 20 7 2 0 100 0 15 44 chain 85501 chr4 191154276 + 175288323 175289468 MER4-int 2692 + 823 1996 41344 30 0 2 232 0 3 59 2 1 18 0 1 79 0 1 43 5 7 89 0 1 4 0 11 48 11 17 256 1 2 131 4 5 133 chain 73354 chr4 191154276 + 175301212 175302136 LTR5_Hs 974 + 0 971 46857 284 0 33 95 0 4 38 5 9 206 0 1 147 3 4 28 3 8 54 1 0 60 chain 86696 chr4 191154276 + 175304179 175305153 LTR5_Hs 974 + 0 974 40882 974 chain 26941 chr4 191154276 + 175306838 175307201 THE1C 375 - 0 367 96480 26 1 0 163 3 4 43 9 13 118 chain 28476 chr4 191154276 + 175313299 175313597 AluYb8 318 - 20 318 91284 298 chain 21376 chr4 191154276 + 175320203 175320516 MER4A1 472 - 0 313 122599 206 15 0 4 6 0 10 5 26 67 chain 84919 chr4 191154276 + 175321910 175322883 LTR5_Hs 974 + 0 974 41544 417 1 2 555 chain 530075 chr4 191154276 + 175333054 175339190 L1PA4 6152 - 0 6150 4180 6 0 5 102 0 1 1445 1 0 594 0 2 735 0 2 49 0 1 192 1 0 347 0 1 277 0 1 79 1 0 263 0 1 1028 0 1 54 4 5 230 0 1 728 chain 8370 chr4 191154276 + 175360228 175360389 L1PB1 5432 - 32 173 169020 9 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 3 0 16 1 0 21 chain 26728 chr4 191154276 + 175362094 175362441 THE1A 353 - 0 353 97231 243 2 0 5 1 2 20 0 1 64 0 6 12 chain 98810 chr4 191154276 + 175362441 175363757 THE1A-int 1579 - 0 1579 37069 17 1 0 46 0 1 170 0 1 76 3 242 48 11 11 470 0 3 10 11 10 103 0 1 18 0 21 34 6 5 292 chain 29231 chr4 191154276 + 175363757 175364111 THE1A 353 - 0 353 87898 243 1 0 110 chain 50065 chr4 191154276 + 175399021 175400097 L1PB3 3668 + 23 776 58971 31 30 22 35 25 16 10 3 0 69 0 3 16 1 3 15 0 3 245 314 0 214 0 3 39 6 5 4 0 1 19 chain 41148 chr4 191154276 + 175409260 175409701 LTR7Y 441 + 0 441 67720 441 chain 11695 chr4 191154276 + 175432431 175432570 MER85 139 + 0 139 153495 139 chain 31943 chr4 191154276 + 175440585 175441027 LTR7 482 + 0 477 80950 100 21 15 151 8 40 9 0 9 153 chain 5077 chr4 191154276 + 175465590 175465682 L1MC1 2226 + 1985 2103 194324 53 19 45 20 chain 5145 chr4 191154276 + 175490853 175490927 MER21B 843 + 386 476 193601 39 6 22 29 chain 8348 chr4 191154276 + 175491429 175491524 MSTA 426 + 26 121 169128 95 chain 62764 chr4 191154276 + 175507389 175508088 SVA_C 1631 - 3 702 51554 590 0 1 19 1 0 89 chain 34037 chr4 191154276 + 175526996 175527444 MER4A1 472 + 0 472 77568 101 5 6 101 1 2 10 5 26 5 0 1 220 chain 86041 chr4 191154276 + 175531092 175532259 MER4-int 2692 + 22 1190 41139 14 2 0 63 0 1 7 5 3 18 10 5 5 0 3 403 20 26 18 1 0 324 1 0 6 0 1 128 0 1 142 chain 4929 chr4 191154276 + 175532413 175532473 MLT2A1 477 - 417 477 195949 60 chain 47778 chr4 191154276 + 175532808 175533448 MER41-int 2638 + 1129 1778 60633 89 0 1 8 0 2 94 1 0 48 7 10 27 5 10 250 1 0 110 chain 50516 chr4 191154276 + 175533448 175534087 THE1B-int 1605 - 936 1601 58638 212 0 25 193 1 2 233 chain 230136 chr4 191154276 + 175540072 175543078 L1P2 5180 + 748 3803 17300 39 0 15 32 1 2 46 32 24 33 0 19 7 1 2 4 1 0 69 4 5 4 1 0 268 19 27 293 0 1 126 1 0 4 0 1 81 0 4 4 0 1 35 6 0 58 1 0 344 6 7 280 0 3 200 0 4 342 0 4 96 12 16 447 0 1 4 9 7 96 chain 78492 chr4 191154276 + 175546130 175547059 L1PA7 6471 - 3 935 44274 7 4 0 327 1 2 410 0 3 98 1 4 81 chain 20388 chr4 191154276 + 175557346 175557598 AluSc8 310 + 41 295 125936 11 2 1 73 0 3 166 chain 141381 chr4 191154276 + 175612516 175614106 SVA_D 2077 + 10 2077 25923 6 1 0 6 1 0 6 0 2 155 2 0 375 0 40 317 0 391 50 0 49 662 1 0 8 chain 32352 chr4 191154276 + 175614263 175614892 L1PA14 3548 - 92 702 80272 42 4 3 13 1 0 4 2 1 15 4 2 32 77 72 51 1 0 84 1 0 6 2 0 17 14 10 99 2 0 4 2 0 10 4 12 26 2 0 14 3 1 24 1 0 68 chain 28706 chr4 191154276 + 175640110 175640413 AluYf4 310 - 7 310 90311 303 chain 2715 chr4 191154276 + 175678517 175678555 L1MC3 1789 + 1090 1127 229946 32 1 0 5 chain 9220 chr4 191154276 + 175678997 175679347 MSTB1 431 + 38 412 164451 19 7 9 53 63 62 23 1 2 11 55 55 18 56 78 44 chain 31590 chr4 191154276 + 175692024 175692393 L1PA4 6152 + 5783 6151 81510 38 2 1 329 chain 547829 chr4 191154276 + 175699613 175705629 L1PA2 6032 + 0 6030 1724 253 0 4 107 0 1 342 0 7 271 0 1 2419 3 1 2189 0 1 174 0 2 258 chain 14613 chr4 191154276 + 175730225 175730492 Tigger3b 1229 + 898 1166 142546 36 33 29 37 12 16 26 9 10 114 chain 55095 chr4 191154276 + 175762899 175763649 MER4E 760 - 0 760 55647 328 1 0 61 0 2 29 8 7 39 7 9 50 36 39 95 0 1 21 0 4 75 chain 29319 chr4 191154276 + 175767154 175767463 AluYa5 310 - 1 310 87443 309 chain 44067 chr4 191154276 + 175778755 175779236 L1P1 4361 - 169 649 64139 42 1 0 438 chain 19778 chr4 191154276 + 175779236 175779454 L1PA3long 6157 + 5939 6157 127883 218 chain 124104 chr4 191154276 + 175779682 175781024 L1PA2 6032 - 3 1344 29662 147 1 0 1194 chain 45246 chr4 191154276 + 175814398 175814896 L1PA4 6152 - 105 603 62772 498 chain 7397 chr4 191154276 + 175814896 175814982 L1PA4 6152 + 6066 6152 174784 86 chain 22078 chr4 191154276 + 175849326 175849686 LTR21B 408 - 39 408 119894 19 29 25 72 0 16 108 2 6 21 1 0 33 14 9 29 1 0 31 chain 28575 chr4 191154276 + 175900463 175900841 MLT2A1 477 - 92 473 90847 181 0 1 21 1 2 9 3 0 152 0 4 11 chain 424938 chr4 191154276 + 175900845 175914182 HERVL-int 5654 - 0 5650 9422 201 0 2 17 1 0 4 0 1 143 0 3 52 8 6 7 8 0 41 1 2 216 0 1 185 1 7 352 0 1 42 0 4 272 1 2 97 0 2 72 0 1 16 1 0 6 0 1 443 0 1 332 12 0 9 6 18 531 0 1 19 3 4 33 7774 0 265 0 3 261 2 1 50 15 15 150 8 5 20 0 2 609 1 2 218 0 1 274 0 2 196 0 59 89 0 1 35 0 7 238 chain 41345 chr4 191154276 + 175903983 175904482 MER9B 498 - 0 498 67478 494 1 0 4 chain 54413 chr4 191154276 + 175905026 175905673 SVA_A 1864 - 2 621 56084 537 43 15 67 chain 288717 chr4 191154276 + 175906070 175909698 HERVK9-int 4720 - 1057 4684 14103 28 20 20 108 0 3 426 7 9 8 0 1 1111 0 3 533 0 1 158 12 7 592 0 1 251 0 6 7 6 0 227 2 1 29 1 0 9 1 0 66 13 9 13 chain 41089 chr4 191154276 + 175911259 175911751 MER9B 498 - 5 498 67777 87 0 2 400 1 0 4 chain 9440 chr4 191154276 + 175921416 175921580 L1PA13 3608 - 141 292 163362 15 12 8 48 2 0 10 12 6 45 1 0 19 chain 540592 chr4 191154276 + 175940896 175946894 L1PA3long 6157 + 4 6152 2721 149 0 1 210 0 1 411 0 128 52 0 4 1344 0 11 49 0 2 842 2 0 5 0 2 4 0 1 830 0 1 1676 0 1 424 chain 90269 chr4 191154276 + 175949267 175950334 MER11C 1089 - 20 1089 39550 107 1 0 383 13 12 216 0 5 248 1 0 98 chain 16271 chr4 191154276 + 175970556 175970750 L1PA4 6152 - 0 195 137546 8 0 1 186 chain 214829 chr4 191154276 + 175976972 175980098 L1PBa 3878 + 775 3793 18178 45 2 0 7 2 4 76 1 2 44 32 34 15 110 17 178 0 3 65 4 5 183 15 7 5 0 1 38 6 9 50 14 8 51 2 0 327 13 11 505 1 0 29 0 1 86 2 1 84 5 9 30 1 3 23 0 1 378 4 5 112 2 1 349 1 2 7 1 0 128 1 0 23 2 0 11 19 13 9 2 0 7 6 3 13 chain 42103 chr4 191154276 + 175999347 176000000 L1MA2 4263 - 178 812 66497 27 7 0 93 15 13 143 3 0 14 7 6 27 4 0 100 3 0 19 0 4 31 8 9 14 5 1 133 chain 20162 chr4 191154276 + 176013732 176014032 LTR12C 1709 + 769 1068 126638 68 1 0 117 41 0 14 0 41 59 chain 983 chr4 191154276 + 176014078 176014120 LTR12C 1709 + 676 718 191885 42 chain 195990 chr4 191154276 + 176101428 176104168 L1PA10 4194 - 44 2717 19501 34 3 0 3 1 0 6 1 2 17 10 1 11 1 0 420 0 1 184 0 1 54 63 0 124 12 11 124 38 11 52 3 11 127 3 0 248 0 9 26 7 10 38 1 2 11 4 3 574 1 0 4 0 1 56 6 23 40 1 0 106 0 2 326 chain 206453 chr4 191154276 + 176127084 176129316 L1PA2 6032 - 6 2238 18757 2232 chain 75841 chr4 191154276 + 176129316 176130131 L1PA2 6032 + 2988 3803 45131 815 chain 27308 chr4 191154276 + 176159883 176160529 Tigger3 1187 + 538 1176 95253 16 3 11 28 75 83 9 2 0 12 1 0 43 8 10 48 1 0 105 33 31 22 10 0 8 76 69 51 6 4 41 1 0 47 chain 27851 chr4 191154276 + 176170944 176171318 THE1C 375 - 0 375 93519 169 0 3 12 9 8 147 1 0 36 chain 59230 chr4 191154276 + 176178695 176179335 L1PA2 6032 + 5390 6032 53260 488 0 2 152 chain 18655 chr4 191154276 + 176203882 176204100 AluY 311 + 0 229 131064 44 0 10 78 0 1 96 chain 33916 chr4 191154276 + 176215082 176215455 L1PA3long 6157 + 5774 6147 77746 373 chain 25134 chr4 191154276 + 176224022 176224333 AluY 311 + 7 311 104096 119 0 1 26 4 0 16 4 0 142 chain 28327 chr4 191154276 + 176239366 176239664 AluYa5 310 - 12 310 91841 298 chain 24393 chr4 191154276 + 176282701 176283055 THE1D 372 + 10 372 108121 30 9 10 112 0 1 5 1 21 7 14 0 176 chain 300298 chr4 191154276 + 176309988 176313775 L1PA8A 6298 + 2452 6282 13407 14 0 1 44 5 4 102 7 14 338 7 11 50 0 1 32 0 1 102 0 6 25 12 13 143 2 1 5 0 1 6 3 0 32 3 4 41 0 4 153 0 8 17 0 3 77 2 0 482 0 2 101 0 2 185 0 2 340 1 0 367 0 1 95 8 9 44 0 1 15 3 0 133 1 0 86 0 2 59 0 1 437 0 4 110 2 3 96 chain 35208 chr4 191154276 + 176322705 176323145 MER4A1 472 + 0 461 75911 230 1 22 209 chain 73789 chr4 191154276 + 176348897 176350102 LTR12D 1347 + 0 1347 46625 34 4 0 101 0 18 53 10 16 6 34 0 20 17 0 10 15 16 26 0 36 16 0 7 32 3 0 57 4 3 9 0 41 35 1 32 17 6 5 41 3 0 63 0 17 78 4 0 203 35 109 15 25 2 59 6 7 163 chain 24172 chr4 191154276 + 176357077 176357377 AluSp 311 + 10 307 109365 122 3 0 175 chain 39992 chr4 191154276 + 176365398 176365934 MER41C 542 - 0 542 69329 206 1 3 17 1 2 6 4 0 29 0 7 23 1 0 199 0 1 49 chain 37654 chr4 191154276 + 176372443 176372985 MER41C 542 - 0 542 72617 53 3 4 149 6 8 11 2 3 11 6 0 54 1 0 89 4 6 104 0 1 49 chain 4283 chr4 191154276 + 176379969 176380026 LTR37B 484 + 402 458 203447 7 1 0 49 chain 37209 chr4 191154276 + 176382317 176382766 LTR7 482 - 0 482 73229 166 0 1 20 1 32 4 0 1 258 chain 314847 chr4 191154276 + 176384030 176387831 HERVH-int 3825 - 0 3825 12815 225 0 2 421 43 0 544 0 1 330 0 1 245 1 2 44 0 4 290 4 31 113 0 1 785 22 30 27 7 27 46 1 0 21 0 32 14 4 0 9 1 0 9 2 1 24 0 1 4 1 0 6 1 0 20 21 0 182 1 0 333 chain 36012 chr4 191154276 + 176387833 176388337 LTR7 482 - 0 482 74880 115 1 2 69 6 7 11 0 31 89 51 0 11 4 0 147 chain 12686 chr4 191154276 + 176393182 176393327 LTR8 732 - 0 145 149499 145 chain 26821 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chain 28759 chr4 191154276 + 176504175 176504480 AluYa5 310 - 5 310 90075 305 chain 79498 chr4 191154276 + 176515834 176516732 MER11D 897 + 0 897 43826 777 1 0 120 chain 7523 chr4 191154276 + 176516848 176516939 MSTA 426 + 335 426 174020 91 chain 440044 chr4 191154276 + 176521123 176526472 L1PA6 6164 - 3 5334 9054 144 2 1 117 52 2 498 0 1 755 1 0 1453 0 1 13 1 0 1724 1 0 196 43 43 18 32 41 190 0 25 109 chain 43530 chr4 191154276 + 176531102 176531610 MER9a2 513 - 4 513 64775 352 1 2 155 chain 10406 chr4 191154276 + 176537305 176537530 L1PB1 5432 - 5 207 158660 4 1 0 19 1 0 13 1 0 21 1 0 24 2 0 15 7 4 16 33 21 9 1 0 44 1 0 12 chain 11531 chr4 191154276 + 176565268 176565396 AluYk4 311 - 6 134 154182 128 chain 9237 chr4 191154276 + 176565405 176565518 MER50 708 + 569 682 164366 113 chain 26407 chr4 191154276 + 176597054 176597427 THE1C 375 + 0 375 98385 173 23 22 30 0 3 53 3 4 60 1 0 30 chain 4299 chr4 191154276 + 176623488 176623547 L1MA4 2864 - 60 117 203213 39 2 0 18 chain 9566 chr4 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6471 - 12 2728 17497 142 1 0 10 2 0 130 0 7 32 0 1 137 0 4 62 0 1 320 0 3 419 1 0 242 3 0 374 0 1 49 0 2 88 2 1 691 chain 21348 chr4 191154276 + 176878584 176878861 L1PA7 6471 + 6180 6457 122698 116 19 15 7 0 4 135 chain 22246 chr4 191154276 + 176899237 176899597 THE1D 372 - 0 370 119138 32 1 0 147 18 20 71 47 56 44 chain 9807 chr4 191154276 + 176900594 176900700 L1PA5 6144 - 198 304 161559 106 chain 45545 chr4 191154276 + 176938689 176939193 L1PA5 6144 - 259 762 62463 156 1 0 347 chain 18896 chr4 191154276 + 176939193 176939408 L1PA5 6144 + 5919 6134 130379 215 chain 75605 chr4 191154276 + 176954414 176955420 L1PA8 5853 + 4863 5853 45709 19 0 1 123 0 2 3 0 2 74 1 0 155 6 0 194 7 8 120 1 0 40 8 7 67 2 1 15 3 1 46 10 1 18 1 0 93 chain 6226 chr4 191154276 + 176959240 176959337 MADE1 96 - 5 96 183352 46 2 0 3 3 0 4 1 0 38 chain 4432 chr4 191154276 + 176980534 176980651 MER58A 224 + 45 162 201565 38 53 53 26 chain 104734 chr4 191154276 + 176994257 176995415 L1PA4 6152 - 1 1163 35562 843 0 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chain 26250 chr4 191154276 + 177222096 177222403 AluSc5 308 - 1 308 99021 307 chain 36469 chr4 191154276 + 177264890 177265397 MER9a3 513 + 0 513 74279 18 0 1 81 10 11 72 17 19 231 2 3 50 0 1 26 chain 388654 chr4 191154276 + 177266746 177271408 HERVK9-int 4720 + 54 4720 10496 4 1 0 66 1 0 8 1 0 23 8 7 25 0 1 362 0 2 26 0 1 473 0 7 236 2 0 104 11 5 324 0 3 492 2 1 228 0 3 318 0 1 522 15 11 643 0 1 353 2 1 401 0 3 11 chain 42915 chr4 191154276 + 177271408 177271920 MER9a3 513 + 0 513 65522 18 0 1 91 0 1 322 2 3 23 2 0 54 chain 30946 chr4 191154276 + 177272271 177272711 MER4A1 472 - 0 441 82609 193 43 44 204 chain 25091 chr4 191154276 + 177308304 177308592 L1PA2 6032 - 2 305 104342 21 0 6 125 0 9 142 chain 6891 chr4 191154276 + 177335027 177335267 MLT2C1 407 - 157 397 178276 7 1 0 14 3 4 11 1 0 50 98 111 16 12 0 27 chain 42360 chr4 191154276 + 177346468 177346924 L1PA3long 6157 - 571 1027 66204 456 chain 50559 chr4 191154276 + 177346924 177347478 L1PA3long 6157 + 5603 6157 58609 554 chain 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121873 19 4 1 88 1 2 16 0 1 58 5 6 101 2 0 5 chain 35785 chr4 191154276 + 177983600 177984132 L1PB2 3958 + 3302 3838 75157 5 2 0 56 1 0 11 7 0 64 3 1 12 3 0 94 1 0 72 1 0 64 1 0 64 15 37 56 chain 33844 chr4 191154276 + 177987131 177987937 LTR12F 595 - 0 595 77864 70 336 25 81 9 10 46 1 0 108 0 90 18 3 1 34 0 12 100 chain 33256 chr4 191154276 + 177993411 177993769 L1PA2 6032 - 0 358 78795 358 chain 11694 chr4 191154276 + 178012167 178012393 L1MA3 4352 - 0 214 153503 22 6 2 11 1 0 29 1 0 5 16 16 7 2 0 24 4 0 41 1 0 4 1 2 51 chain 13559 chr4 191154276 + 178022048 178022196 L1PA4 6152 + 5995 6143 146136 148 chain 24150 chr4 191154276 + 178023853 178024141 L1PA7 6471 + 6183 6467 109472 278 4 0 6 chain 9853 chr4 191154276 + 178034060 178034187 THE1B 368 - 238 368 161331 88 0 5 24 2 0 13 chain 25367 chr4 191154276 + 178036208 178036562 THE1B 368 - 20 368 102848 58 3 0 102 23 20 168 chain 28774 chr4 191154276 + 178055117 178055461 L1PA5 6144 + 5793 6138 90001 245 0 1 99 chain 10218 chr4 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1 0 9 3 2 33 2 0 17 0 2 10 1 0 87 0 16 23 4 1 5 1 0 84 1 0 4 0 1 11 2 0 20 1 0 71 1 0 16 2 0 24 1 0 46 13 14 133 1 0 133 chain 4847 chr4 191154276 + 178123382 178123438 MER58A 224 - 121 177 196820 56 chain 107909 chr4 191154276 + 178147902 178149244 LTR12C 1709 - 0 1709 34750 84 5 4 393 0 4 79 0 47 117 0 278 230 1 0 46 5 0 46 0 43 37 1 2 59 0 1 239 chain 30427 chr4 191154276 + 178156838 178157156 AluYb8 318 - 0 318 83611 318 chain 3197 chr4 191154276 + 178162741 178162777 MLT2C2 476 + 432 468 221001 36 chain 77325 chr4 191154276 + 178180439 178181529 L1PA13 3608 - 120 1191 44818 20 1 0 20 11 7 45 3 1 9 7 6 45 1 0 62 2 0 113 1 0 32 2 1 13 7 9 265 2 3 267 13 4 149 chain 5267 chr4 191154276 + 178190917 178190999 MER58C 217 - 9 92 192350 6 1 0 46 7 9 22 chain 27364 chr4 191154276 + 178210530 178210842 LTR17 781 - 455 767 95065 312 chain 3586 chr4 191154276 + 178221367 178221408 MLT1D 503 - 0 41 213882 41 chain 6928 chr4 191154276 + 178240630 178240817 L1PB1 5432 - 10 176 177978 4 1 0 14 1 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191154276 + 178839053 178840360 L1PA7 6471 + 3594 4911 34428 17 0 1 383 0 2 92 0 1 274 0 1 240 0 1 62 0 4 239 chain 130928 chr4 191154276 + 178875951 178877453 L1PA4 6152 + 4635 6143 27879 665 1 5 447 0 3 222 11 12 11 9 7 136 chain 13989 chr4 191154276 + 178888332 178888551 Tigger3a 397 + 58 337 144616 17 15 64 9 0 10 57 5 6 116 chain 213266 chr4 191154276 + 178919866 178922198 L1PA3long 6157 + 3824 6157 18276 519 0 1 1813 chain 542396 chr4 191154276 + 178936186 178942213 L1PA3long 6157 + 0 6157 2446 70 0 1 81 0 1 503 3 0 121 1 129 830 0 1 2070 0 1 622 0 1 1726 chain 22860 chr4 191154276 + 178944900 178945168 L1PA5 6144 + 5867 6135 116287 268 chain 8340 chr4 191154276 + 178959769 178959871 MSTD 398 - 275 377 169171 102 chain 26252 chr4 191154276 + 178972037 178972388 L1PA6 6164 - 21 369 99011 40 0 4 7 14 8 57 1 0 232 chain 3247 chr4 191154276 + 178986373 178986407 tRNA-Cys-TGY 72 + 3 37 220074 34 chain 23362 chr4 191154276 + 178995979 178996252 L1PA4 6152 + 5872 6143 113857 126 2 0 145 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8 5 45 4 0 53 2 1 12 9 6 11 2 0 72 3 1 85 11 10 19 1 0 13 2 0 49 66 37 44 1 0 81 1 2 17 chain 383296 chr4 191154276 + 179779702 179783881 L1PA2 6032 - 10 4191 10659 760 0 1 630 1 0 439 0 1 2109 0 1 240 chain 489337 chr4 191154276 + 179805083 179811233 L1PA6 6164 + 0 6156 7395 246 1 0 4 13 14 100 58 59 26 8 0 120 1 0 60 2 3 155 0 17 86 3 0 176 2 1 725 8 5 98 0 1 434 13 0 1309 0 1 61 6 8 28 0 1 59 0 9 19 2 3 124 0 1 696 2 1 29 3 1 357 7 6 246 0 1 52 0 1 414 0 2 397 chain 30018 chr4 191154276 + 179822303 179822620 AluYb8 318 + 0 317 84743 317 chain 3886 chr4 191154276 + 179831511 179831555 LTR51 675 - 3 47 209074 44 chain 40958 chr4 191154276 + 179846832 179847360 L1PA8 5853 + 5322 5853 67963 94 0 7 141 1 0 46 2 0 85 4 5 40 2 1 19 1 0 93 chain 9213 chr4 191154276 + 179873777 179873896 MER85 139 - 0 129 164491 39 1 11 79 chain 338875 chr4 191154276 + 179906944 179910802 L1PA5 6144 - 12 3894 11925 336 1 6 1038 0 15 622 3 0 429 1 9 1371 1 0 56 chain 70185 chr4 191154276 + 179910802 179911585 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185155672 MER57B1 401 + 0 399 93640 190 22 23 77 10 8 101 chain 9503 chr4 191154276 + 185155675 185155791 MER57B1 401 - 285 401 163059 116 chain 4292 chr4 191154276 + 185183456 185183505 MER6A 605 - 0 49 203330 49 chain 3498 chr4 191154276 + 185221244 185221291 Tigger2b_Pri 1066 - 966 1012 215388 18 1 0 28 chain 23831 chr4 191154276 + 185229507 185229773 AluY 311 + 41 308 111303 91 0 1 175 chain 31918 chr4 191154276 + 185246458 185247104 MER4A1 472 + 0 472 80982 15 13 15 18 0 1 176 0 21 72 0 1 8 1 0 90 198 0 55 chain 7731 chr4 191154276 + 185255489 185255577 L1P2 5180 + 2 90 172703 88 chain 41062 chr4 191154276 + 185260566 185261094 MER41B 635 - 107 635 67821 55 8 0 5 0 7 334 4 5 122 chain 19739 chr4 191154276 + 185301401 185301748 THE1D 372 + 0 349 127985 41 15 6 10 9 10 41 2 3 77 3 4 18 26 34 105 chain 20559 chr4 191154276 + 185367873 185368125 AluY 311 + 48 298 125434 77 2 1 65 1 0 107 chain 4080 chr4 191154276 + 185385707 185385842 LTR68 653 - 59 211 206187 38 21 20 16 41 59 19 chain 24971 chr4 191154276 + 185399583 185399879 AluY 311 + 11 303 104946 120 0 2 130 6 0 40 chain 30699 chr4 191154276 + 185405185 185405626 LOR1b 457 - 13 457 83040 50 13 4 5 0 3 79 0 1 98 1 2 143 16 23 36 chain 10453 chr4 191154276 + 185416070 185416206 L1MC3 1789 + 1089 1218 158479 123 7 0 6 chain 11287 chr4 191154276 + 185422861 185423042 MER30 238 + 36 238 155098 71 14 26 28 1 7 31 2 8 6 3 0 25 chain 31760 chr4 191154276 + 185439737 185440162 LOR1b 457 + 7 445 81232 15 7 18 103 2 0 33 0 1 173 0 3 92 chain 215090 chr4 191154276 + 185444263 185447071 L1PA11 4918 - 430 3217 18159 13 2 0 16 25 0 49 8 6 10 2 1 55 8 4 6 1 0 279 1 0 269 8 9 111 1 0 118 0 1 427 8 13 526 2 0 206 2 6 101 0 9 33 6 7 399 4 1 112 chain 26148 chr4 191154276 + 185454230 185454527 AluY 311 + 3 300 99406 123 0 1 138 1 0 35 chain 6067 chr4 191154276 + 185457610 185457716 MLT2C1 407 + 10 100 184691 29 25 9 52 chain 4995 chr4 191154276 + 185468140 185468249 MIRb 242 + 17 125 195194 50 38 37 21 chain 44028 chr4 191154276 + 185476893 185477520 L1PA16 3655 + 2118 2756 64169 270 27 35 197 0 1 14 6 9 31 2 1 80 chain 62045 chr4 191154276 + 185495371 185496042 L1PA4 6152 - 9 680 51881 671 chain 123869 chr4 191154276 + 185501267 185502838 THE1A-int 1579 - 0 1579 29743 213 1 0 222 3 2 354 17 18 119 1 0 117 15 25 509 chain 28152 chr4 191154276 + 185502838 185503192 THE1A 353 - 0 353 92451 243 4 3 107 chain 99261 chr4 191154276 + 185512880 185514103 LTR12C 1709 + 0 1709 36961 338 3 46 185 10 9 221 3 319 106 0 4 168 0 102 61 0 25 21 5 2 102 chain 531150 chr4 191154276 + 185521554 185529108 L1PA7 6471 + 5 6468 4062 385 0 14 269 9 11 136 0 1 408 1 0 202 0 1 318 4 5 75 0 1 300 5 20 487 1 2 446 320 1 81 0 3 226 311 0 77 520 0 97 0 3 740 0 1 151 0 1 205 2 4 127 6 5 555 1 0 12 0 5 234 0 3 690 3 4 10 1 0 125 0 2 5 0 6 9 chain 45126 chr4 191154276 + 185525621 185526135 MER9a2 513 + 0 513 62903 19 1 0 20 1 0 4 0 1 469 chain 6375 chr4 191154276 + 185533699 185534700 LTR54B 464 + 10 464 182208 47 885 337 11 8 9 50 chain 20101 chr4 191154276 + 185542213 185542500 AluSc 308 + 15 296 126822 44 18 13 30 8 7 187 chain 24758 chr4 191154276 + 185552411 185552722 AluY 311 + 0 307 106119 64 2 0 59 7 5 179 chain 35307 chr4 191154276 + 185588401 185589160 LTR71A 459 - 0 459 75786 61 301 0 141 1 0 55 1 2 35 1 2 163 chain 27402 chr4 191154276 + 185594276 185594582 AluYk11 308 - 2 308 94964 306 chain 25611 chr4 191154276 + 185608758 185609069 AluSp 311 - 2 311 101672 177 2 0 132 chain 7774 chr4 191154276 + 185625443 185625552 Tigger3c 601 + 311 433 172460 53 4 17 52 chain 119008 chr4 191154276 + 185641007 185642864 L1M1 2793 + 779 2674 31406 23 1 0 22 13 11 4 1 0 54 5 3 6 1 0 81 2 1 14 6 5 95 0 1 12 5 6 63 1 0 68 2 0 27 7 0 69 1 2 11 2 6 49 0 1 38 5 1 25 1 0 54 1 6 204 0 4 95 4 5 51 1 11 81 0 9 25 7 15 23 16 18 28 0 7 83 21 30 4 1 0 10 7 12 44 0 3 60 9 12 60 0 2 10 13 0 90 1 0 18 0 1 5 0 1 70 1 0 46 chain 353304 chr4 191154276 + 185656858 185660989 HERV9-int 5642 + 603 4824 11517 11 5 0 181 1 0 65 1 0 59 2 87 101 7 3 125 19 29 258 0 1 1507 1 0 1057 0 1 423 0 4 200 0 1 108 chain 106503 chr4 191154276 + 185662188 185663783 LTR12C 1709 + 0 1709 35120 24 51 60 125 0 2 45 41 40 168 5 7 19 2 3 237 40 0 107 1 0 227 8 55 89 27 20 53 4 5 110 0 102 120 8 7 84 chain 2671 chr4 191154276 + 185662905 185662945 LTR12C 1709 + 848 889 110527 38 0 1 2 chain 42415 chr4 191154276 + 185679931 185680444 L1PA4 6152 - 11 539 66127 44 1 18 73 1 0 106 0 1 225 1 0 18 5 4 39 chain 47628 chr4 191154276 + 185680444 185680971 L1PA4 6152 + 5093 5624 60749 205 0 4 322 chain 20745 chr4 191154276 + 185682995 185683297 AluSq2 311 + 0 296 124805 10 3 0 123 10 11 113 27 23 16 chain 16641 chr4 191154276 + 185691678 185691870 L1PA4 6152 + 5959 6151 136549 192 chain 28258 chr4 191154276 + 185700284 185700634 THE1A 353 + 0 353 92085 109 2 1 27 0 4 212 chain 24799 chr4 191154276 + 185701028 185701314 AluSp 311 - 14 300 105895 286 chain 25516 chr4 191154276 + 185778448 185778748 AluSg7 307 - 6 307 102158 169 0 1 131 chain 31084 chr4 191154276 + 185833181 185833672 HERVK14-int 1672 - 1186 1671 82376 152 8 6 23 6 5 30 0 1 71 23 29 6 6 0 75 1 0 47 6 4 7 1 0 29 chain 3125 chr4 191154276 + 185835248 185835301 MER45C 884 - 17 67 222456 20 7 4 26 chain 59974 chr4 191154276 + 185835888 185836641 LTR12 884 - 0 884 52838 48 1 2 434 0 22 40 8 116 222 chain 185838 chr4 191154276 + 185839253 185841635 HERV9-int 5642 - 0 3874 20428 17 32 7 10 14 10 14 1 0 59 1 0 27 3 1 36 6 4 225 2 1 282 0 2 85 0 1 5 0 1 323 11 0 314 1 2 71 6 3 5 0 3 182 7 942 360 2 1 111 8 609 45 1 0 116 chain 48766 chr4 191154276 + 185843881 185844463 LTR10C 591 + 1 591 59899 200 4 0 309 0 2 27 0 10 42 chain 4998 chr4 191154276 + 185844486 185844541 LTR53 516 - 459 514 195154 55 chain 6185 chr4 191154276 + 185856819 185856895 MER39B 650 + 563 639 183699 76 chain 40511 chr4 191154276 + 185857156 185857748 LTR9B 643 + 0 594 68578 185 0 1 15 10 9 15 7 8 100 1 0 88 38 40 133 chain 19247 chr4 191154276 + 185868833 185869135 THE1D 372 + 0 372 129390 110 22 84 113 11 10 9 0 10 4 1 0 32 chain 118351 chr4 191154276 + 185910425 185911806 LTR12C 1709 - 0 1709 31668 481 2 6 39 0 207 128 0 118 310 2 1 419 chain 42780 chr4 191154276 + 185918660 185919162 L1PA7 6471 - 3 499 65680 7 6 0 489 chain 12656 chr4 191154276 + 185927380 185927548 L1MA3 4352 - 314 490 149616 26 0 9 104 1 0 37 chain 2722 chr4 191154276 + 185936984 185937015 MIR 256 - 119 150 229851 31 chain 106407 chr4 191154276 + 185947528 185948824 L1PA8A 6298 + 4985 6291 35151 504 6 9 82 2 0 105 0 9 597 chain 44229 chr4 191154276 + 185965943 185966462 MER9a1 513 - 0 513 63911 292 4 0 127 1 0 83 1 0 11 chain 381497 chr4 191154276 + 185966478 185971032 HERVK9-int 4720 - 16 4684 10718 158 0 28 80 0 96 233 0 1 175 0 2 568 0 1 561 4 5 526 9 0 461 1 2 1627 0 1 17 1 0 30 1 0 8 1 0 50 1 0 16 1 0 4 8 5 13 chain 40217 chr4 191154276 + 185972352 185972822 MER9a1 513 - 0 499 69010 330 0 29 140 chain 24083 chr4 191154276 + 185984014 185984294 AluSp 311 - 26 306 109850 280 chain 25166 chr4 191154276 + 186008064 186008354 AluSp 311 - 12 302 103930 290 chain 25718 chr4 191154276 + 186028552 186028852 AluSq10 312 + 0 300 101230 300 chain 6195 chr4 191154276 + 186032374 186032449 HY3 101 - 3 98 183614 60 0 20 15 chain 15187 chr4 191154276 + 186042700 186042977 MSTA 426 + 27 301 140809 98 26 29 39 43 37 71 chain 45897 chr4 191154276 + 186046730 186047243 MER9a1 513 + 0 513 62133 513 chain 11908 chr4 191154276 + 186052277 186052568 MER4B 649 - 262 649 152566 33 0 15 11 0 5 72 9 11 21 3 32 13 27 69 29 38 21 10 5 25 20 chain 25361 chr4 191154276 + 186053891 186054202 AluYk4 311 + 0 307 102884 125 4 2 148 3 1 31 chain 8969 chr4 191154276 + 186073628 186073830 L1PA16 3655 + 600 789 165780 42 0 4 23 40 40 21 1 2 24 20 0 14 0 2 17 chain 16214 chr4 191154276 + 186085681 186085878 MER107 203 + 0 203 137711 151 0 10 12 4 0 30 chain 11684 chr4 191154276 + 186088069 186088251 MER30 238 + 40 238 153543 69 5 18 31 2 8 29 3 0 43 chain 22568 chr4 191154276 + 186094246 186094536 AluSc8 310 + 11 304 117726 121 0 3 126 4 6 17 2 0 20 chain 3375 chr4 191154276 + 186115191 186115227 MER58A 224 + 46 82 217591 36 chain 17894 chr4 191154276 + 186118935 186119247 Tigger1 2417 + 469 787 133119 44 27 24 19 0 4 59 15 18 57 7 10 56 1 0 27 chain 3677 chr4 191154276 + 186144489 186144534 L1MC5 759 - 83 128 212276 45 chain 35668 chr4 191154276 + 186153251 186153714 LTR71A 459 - 0 459 75304 165 4 3 89 5 2 200 chain 156082 chr4 191154276 + 186160925 186162680 SVA_D 2077 - 0 2059 23848 99 0 4 492 0 98 323 0 1 6 0 136 153 0 40 96 0 40 513 1 3 26 17 0 29 chain 7440 chr4 191154276 + 186163923 186164049 MER21A 919 - 771 917 174518 25 22 42 79 chain 11296 chr4 191154276 + 186172483 186172749 L1MB2 1706 - 65 329 155070 20 1 0 10 1 0 13 96 91 51 0 5 74 chain 4313 chr4 191154276 + 186178839 186178904 MER33 330 + 237 300 203054 43 1 0 14 1 0 6 chain 29794 chr4 191154276 + 186198875 186199185 AluYa5 310 - 0 310 85467 310 chain 69480 chr4 191154276 + 186238186 186239098 L1PA8 5853 + 4904 5853 48617 105 0 2 83 1 0 445 0 1 20 0 34 14 2 0 70 2 1 14 9 8 39 2 1 19 1 0 41 19 26 26 chain 56475 chr4 191154276 + 186241029 186241718 L1PA8A 6298 + 5579 6270 54865 599 0 1 11 2 3 77 chain 40853 chr4 191154276 + 186247053 186248429 LTR19-int 1103 - 136 1060 68092 45 42 25 20 41 16 35 1 0 4 2 0 17 4 1 10 1 0 10 42 13 49 164 64 13 1 0 50 15 1 18 4 0 76 25 24 24 5 0 88 8 0 40 5 0 9 8 5 49 27 6 31 88 27 43 20 0 5 1 0 18 1 0 7 17 0 27 107 0 13 1 0 4 21 18 14 1 0 5 chain 58099 chr4 191154276 + 186257348 186258317 L1PB1 5432 - 10 953 53926 18 1 0 13 8 7 14 1 0 12 8 1 6 0 5 11 12 9 18 16 6 21 1 0 45 1 0 15 2 1 52 2 0 9 5 1 12 1 0 8 1 0 21 23 27 159 0 3 90 35 34 6 0 1 171 3 0 80 2 1 66 chain 10643 chr4 191154276 + 186270241 186270430 MER30 238 - 12 238 157634 35 3 0 62 4 22 30 26 48 29 chain 12968 chr4 191154276 + 186270530 186270708 L1MA6 2487 - 258 433 148358 161 4 1 13 chain 23452 chr4 191154276 + 186298389 186298674 AluSp 311 + 0 284 113370 28 1 0 256 chain 20146 chr4 191154276 + 186324852 186325141 AluY 311 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chain 18382 chr4 191154276 + 186626491 186626732 AluSc 308 + 72 294 131833 213 19 0 9 chain 21413 chr4 191154276 + 186628789 186629113 THE1B 368 - 26 368 122465 102 4 14 11 3 7 7 0 3 17 13 12 58 3 4 48 0 1 58 chain 22969 chr4 191154276 + 186681448 186681728 AluSq2 311 + 15 295 115758 280 chain 5183 chr4 191154276 + 186690431 186690606 Tigger4 2445 - 37 193 193212 11 10 3 18 44 37 15 19 14 25 0 1 14 1 0 18 chain 29108 chr4 191154276 + 186727600 186727911 AluYa5 310 - 0 310 88515 192 1 0 118 chain 5579 chr4 191154276 + 186755294 186755365 MSTA 426 - 63 139 189282 62 0 5 9 chain 19065 chr4 191154276 + 186756038 186756434 MSTA 426 + 0 426 129920 21 4 2 47 1 2 22 34 58 55 2 0 6 6 0 12 10 17 28 43 51 105 chain 3044 chr4 191154276 + 186778471 186778505 MER11A 1151 + 111 145 224130 34 chain 66767 chr4 191154276 + 186800185 186800921 L1PA4 6152 - 8 747 49747 105 0 1 35 0 2 596 chain 4562 chr4 191154276 + 186803523 186803758 L1ME1 1623 + 147 372 200083 16 79 77 45 37 37 13 26 18 19 chain 22135 chr4 191154276 + 186822358 186822643 AluSp 311 - 15 297 119648 12 2 0 91 0 1 60 2 0 118 chain 34108 chr4 191154276 + 186845503 186846114 LTR9B 643 + 1 643 77472 37 3 6 7 0 1 67 4 18 53 28 33 30 0 1 168 83 90 6 1 0 65 7 9 11 1 0 40 chain 19578 chr4 191154276 + 186848437 186848723 L1PA8 5853 - 0 282 128437 90 8 7 15 2 1 52 1 0 9 2 1 5 0 2 63 2 0 37 chain 40933 chr4 191154276 + 186901685 186902175 MER9a1 513 + 0 513 67997 15 0 24 58 9 8 408 chain 5087 chr4 191154276 + 186947672 186947732 U4 144 - 76 136 194204 60 chain 10953 chr4 191154276 + 186948251 186948399 MSTB 430 + 0 151 156387 41 0 2 54 4 5 49 chain 30488 chr4 191154276 + 186965176 186965578 LTR7 482 - 0 482 83452 158 0 9 9 0 1 27 1 32 21 0 1 109 8 46 69 chain 287504 chr4 191154276 + 186966836 186970426 HERVH-int 3825 - 0 3825 14189 257 6 5 117 37 38 562 0 1 394 1 2 445 0 4 530 1 0 10 0 2 27 9 0 595 0 3 38 3 8 7 2 0 15 86 319 30 18 17 65 2 1 333 chain 27602 chr4 191154276 + 186970436 186970826 LTR7 482 - 8 482 94341 92 0 4 54 20 61 38 0 1 109 8 46 69 chain 76341 chr4 191154276 + 186971210 186972161 LTR5_Hs 974 + 0 974 45294 8 0 4 133 1 5 456 0 12 41 0 1 50 0 2 64 7 7 191 chain 13880 chr4 191154276 + 187010795 187011288 LTR8 732 + 7 566 144980 15 8 5 14 9 10 32 26 39 132 229 284 28 chain 7012 chr4 191154276 + 187016497 187016596 MER51B 395 + 277 388 177380 17 3 15 79 chain 28291 chr4 191154276 + 187020419 187020745 L1PA4 6152 - 0 329 91977 6 0 2 144 1 2 175 chain 555689 chr4 191154276 + 187031547 187037574 L1PA2 6032 - 0 6032 750 2900 0 4 2420 0 1 707 chain 74812 chr4 191154276 + 187045419 187046266 L1PA5 6144 - 1 847 46108 148 1 0 698 chain 7646 chr4 191154276 + 187083069 187083153 L1PA8 5853 - 1 85 173252 84 chain 492493 chr4 191154276 + 187101537 187107165 L1PA5 6144 - 0 6144 7246 18 0 2 129 0 7 6 7 0 688 1 0 323 0 1 43 1 0 693 0 1 901 0 1 1017 4 1 266 0 1 876 9 0 157 1 0 397 0 525 91 chain 43184 chr4 191154276 + 187139896 187140443 MLT2A2 560 - 0 560 65193 147 0 11 222 1 0 22 0 3 155 chain 87553 chr4 191154276 + 187140443 187141538 HERVL-int 5654 - 0 1090 40549 89 9 4 128 4 0 80 0 4 785 chain 253891 chr4 191154276 + 187165000 187168370 HERVH-int 3825 - 0 3825 16036 154 3 254 328 0 3 70 1 0 566 20 20 12 45 46 277 4 9 313 2 0 82 0 5 83 27 1 49 0 1 82 1 0 39 9 0 202 15 0 84 25 2 365 1 0 24 0 150 34 1 0 14 30 149 75 1 0 332 chain 21517 chr4 191154276 + 187168388 187168738 LTR7 482 - 16 482 122080 33 13 14 113 0 1 13 8 38 31 1 2 10 1 11 49 0 50 42 13 36 23 chain 34158 chr4 191154276 + 187181002 187181488 MER1A 529 - 0 529 77404 64 11 8 216 0 7 91 19 59 47 2 1 36 chain 27199 chr4 191154276 + 187182917 187183233 AluY 311 + 0 311 95603 126 5 0 185 chain 14883 chr4 191154276 + 187189316 187189513 MER2 342 + 96 294 141679 12 1 2 184 chain 4728 chr4 191154276 + 187225558 187225705 MER58A 224 + 46 194 198192 38 46 47 12 23 23 28 chain 21270 chr4 191154276 + 187231944 187232315 L1PA15 4387 - 20 373 122959 10 1 0 31 4 0 9 8 6 32 0 1 8 17 14 39 1 0 8 5 1 23 1 0 4 1 0 51 1 0 25 4 3 88 chain 105240 chr4 191154276 + 187245556 187246799 LTR12C 1709 + 0 1709 35440 262 0 1 323 0 40 166 10 326 81 0 2 14 9 13 52 1 2 114 0 102 211 chain 14566 chr4 191154276 + 187271495 187271683 MER30 238 + 36 238 142688 72 6 20 110 chain 47154 chr4 191154276 + 187280168 187280786 LTR66 600 - 0 600 61083 126 18 0 58 1 3 10 6 4 399 chain 81104 chr4 191154276 + 187284058 187285054 LTR13 1007 + 0 1007 43138 158 0 1 222 4 5 298 0 2 50 0 7 69 0 1 162 2 1 31 chain 24016 chr4 191154276 + 187285249 187285578 LTR14A 344 + 0 344 110239 143 1 0 4 7 1 18 0 4 82 0 18 33 11 11 30 chain 60405 chr4 191154276 + 187291148 187291869 L1PA7 6471 + 5745 6460 52631 64 0 3 324 0 1 96 15 5 222 chain 404688 chr4 191154276 + 187303375 187308755 L1PB1 5432 + 58 5424 9955 248 0 36 64 0 2 185 39 37 132 1 0 86 6 9 236 0 11 239 1 2 50 1 0 15 17 8 417 0 1 427 10 13 222 5 0 239 3 1 21 1 0 7 1 2 10 0 1 75 1 5 239 1 0 139 1 0 490 3 5 193 0 1 285 0 1 114 8 1 297 3 0 99 0 2 152 0 6 220 35 11 26 1 0 7 16 11 11 2 0 51 2 1 16 1 0 43 1 0 16 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 2 1 12 1 0 16 1 0 4 chain 203397 chr4 191154276 + 187318408 187320671 L1PA4 6152 - 9 2277 18967 459 0 2 882 1 0 134 0 1 35 0 1 141 1 3 610 chain 29628 chr4 191154276 + 187324361 187324731 THE1B 368 - 0 368 86125 200 2 0 168 chain 55425 chr4 191154276 + 187324736 187325431 THE1B-int 1605 - 6 694 55450 636 9 3 4 1 0 45 chain 95726 chr4 191154276 + 187358222 187359627 L1MA1 4479 + 2773 4139 37888 31 1 0 62 1 0 63 1 2 27 1 0 27 2 0 129 0 3 5 8 5 24 7 9 91 1 0 12 5 0 126 3 0 42 1 0 87 2 0 73 6 5 119 1 0 24 2 0 16 1 0 71 1 0 20 28 25 76 23 10 115 7 6 27 2 0 34 chain 9382 chr4 191154276 + 187373887 187374002 LTR8A 794 - 564 679 163647 115 chain 6403 chr4 191154276 + 187405123 187405215 MER4D 903 + 802 894 181997 23 1 0 23 0 1 14 0 1 5 1 0 25 chain 7555 chr4 191154276 + 187418075 187418166 MER41D 557 + 0 91 173839 91 chain 212693 chr4 191154276 + 187438060 187440791 L1PBa 3878 - 313 3049 18309 158 1 2 28 6 5 152 3 0 170 6 8 332 0 3 58 2 1 5 0 1 253 0 1 163 6 7 270 0 3 129 1 0 202 3 0 103 0 1 59 5 4 267 2 0 193 0 3 38 1 2 115 chain 44097 chr4 191154276 + 187444955 187445461 L1PA5 6144 - 0 506 64092 506 chain 24822 chr4 191154276 + 187449712 187450017 AluSp 311 - 7 311 105755 172 1 0 132 chain 23950 chr4 191154276 + 187450586 187450881 L1PA4 6152 - 9 290 110622 64 19 5 212 chain 46201 chr4 191154276 + 187453384 187453916 L1PA4 6152 - 15 540 61847 126 7 0 399 chain 25439 chr4 191154276 + 187461068 187461413 THE1B 368 - 0 362 102499 54 0 1 141 7 6 92 13 30 38 chain 70111 chr4 191154276 + 187502913 187503925 MER11A 1151 + 0 1136 48348 55 1 100 73 1 0 66 4 0 32 0 2 112 5 6 92 5 6 139 7 9 75 5 6 48 8 41 22 18 0 36 0 1 14 5 6 40 6 7 43 0 1 34 5 9 61 chain 46326 chr4 191154276 + 187586382 187586894 L1PA5 6144 - 532 1048 61750 317 0 4 195 chain 40263 chr4 191154276 + 187586894 187587350 L1PA5 6144 + 5688 6144 68923 456 chain 26005 chr4 191154276 + 187599860 187600179 L1PA8A 6298 + 5692 6011 99995 319 chain 9364 chr4 191154276 + 187658874 187658996 MLT1C 463 + 342 463 163737 67 1 0 54 chain 33687 chr4 191154276 + 187677585 187678001 L1PA7 6471 - 22 447 78113 126 12 16 107 0 4 57 0 1 114 chain 177104 chr4 191154276 + 187689236 187691223 L1PA4 6152 + 4143 6137 21243 1158 0 1 162 11 17 656 chain 32492 chr4 191154276 + 187758466 187758829 L1PA3long 6157 - 15 381 80045 357 0 3 6 chain 165294 chr4 191154276 + 187762523 187764350 L1PA4 6152 - 0 1839 22614 6 0 7 71 0 1 28 0 1 795 0 3 927 chain 39812 chr4 191154276 + 187768981 187769422 L1PA2 6032 + 5580 6032 69612 137 0 1 38 0 10 266 chain 29347 chr4 191154276 + 187795709 187796018 AluYa5 310 - 1 310 87309 309 chain 18204 chr4 191154276 + 187811736 187811964 LTR12C 1709 + 769 996 132322 68 1 0 159 chain 39182 chr4 191154276 + 187819168 187819599 L1PA2 6032 + 5597 6028 70484 431 chain 6083 chr4 191154276 + 187853798 187853868 MER121 330 + 114 184 184554 70 chain 19516 chr4 191154276 + 187877788 187877999 L1PA5 6144 - 3 214 128611 211 chain 27501 chr4 191154276 + 187907642 187907994 THE1B 368 - 0 364 94647 172 2 0 27 1 0 113 1 16 36 chain 40979 chr4 191154276 + 187908011 187908531 THE1B-int 1605 - 14 540 67937 324 0 1 38 11 12 70 0 4 77 chain 90610 chr4 191154276 + 187924135 187925289 L1PA10 4194 + 2997 4147 39425 134 10 11 334 6 0 209 1 0 222 4 9 201 13 10 20 chain 20806 chr4 191154276 + 187947724 187948117 MSTB 430 - 13 430 124577 139 23 52 15 11 8 35 63 61 107 chain 134868 chr4 191154276 + 187952143 187953710 L1PA5 6144 - 0 1576 27046 152 1 0 819 0 11 87 20 17 17 0 1 169 0 1 302 chain 21850 chr4 191154276 + 187954120 187954491 THE1B 368 + 0 368 120819 59 64 63 50 4 3 112 2 1 80 chain 123067 chr4 191154276 + 187954491 187956045 THE1B-int 1605 + 0 1593 30021 24 0 1 316 0 13 76 1 26 563 0 1 360 1 0 213 chain 556553 chr4 191154276 + 187971675 187977804 L1PA3long 6157 + 17 6155 666 135 0 1 726 0 2 309 0 3 256 0 3 3654 0 1 193 1 0 855 chain 7832 chr4 191154276 + 187980969 187981060 L1PA8 5853 + 5762 5853 172112 91 chain 71243 chr4 191154276 + 188052260 188053107 L1PA4 6152 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1 5 29 0 1 89 0 2 48 chain 4688 chr4 191154276 + 188305624 188305840 MER8 282 - 20 282 198655 19 1 3 5 3 0 13 101 148 9 1 0 9 10 11 45 chain 5088 chr4 191154276 + 188305842 188306066 L1MC1 2226 + 1992 2189 194196 42 2 1 12 133 108 29 1 0 5 chain 16515 chr4 191154276 + 188321118 188321311 L1PA7 6471 + 6267 6461 136873 46 0 1 147 chain 522625 chr4 191154276 + 188323331 188330044 L1PA7 6471 - 4 6471 4902 122 1 7 635 1 0 86 0 3 7 1 5 507 8 9 107 2 1 234 248 2 72 0 4 145 1 3 117 8 9 29 0 1 359 1 0 3 1 0 194 6 7 135 12 11 171 0 2 259 19 1 105 0 1 248 1 0 328 16 2 291 0 1 412 0 7 255 9 10 353 1 2 795 1 2 146 0 1 261 chain 16699 chr4 191154276 + 188325084 188325290 L1PA7 6471 - 3389 3595 135935 206 chain 133246 chr4 191154276 + 188340690 188342666 LTR12C 1709 - 0 1709 27383 167 0 102 212 0 4 27 1 2 78 2 0 6 1 0 3 1 0 271 1 0 43 2 0 91 41 0 313 322 0 76 1 0 4 0 1 14 17 13 282 chain 2155 chr4 191154276 + 188341596 188341621 LTR12C 1709 - 847 872 118424 25 chain 29400 chr4 191154276 + 188341959 188342272 AluYb8 318 + 0 313 87076 313 chain 21554 chr4 191154276 + 188402288 188402566 AluY 311 + 38 297 121946 45 15 0 49 0 1 155 5 0 9 chain 124547 chr4 191154276 + 188409191 188410750 THE1B-int 1605 + 16 1605 29526 103 0 1 297 11 34 21 0 1 189 0 1 4 4 6 512 0 1 142 0 1 276 chain 110981 chr4 191154276 + 188426603 188427930 LTR12C 1709 + 0 1709 33936 144 1 2 504 0 278 184 1 0 87 0 2 23 0 4 52 1 2 114 0 102 162 5 0 49 chain 462086 chr4 191154276 + 188442072 188448030 L1PA7 6471 + 741 6459 8325 381 0 1 757 2 0 760 0 1 31 21 70 258 2 1 82 6 1 17 0 4 292 319 0 20 0 1 66 1 2 126 1 0 36 10 13 175 2 1 93 0 1 49 3 0 20 1 2 380 0 1 282 1 9 84 0 1 196 2 1 20 0 11 75 6 9 543 0 4 480 0 1 7 0 4 20 3 1 328 chain 27016 chr4 191154276 + 188450188 188450478 AluYa5 310 + 20 310 96228 290 chain 51686 chr4 191154276 + 188463766 188464466 L1PA11 4918 + 3818 4508 57827 89 4 1 196 2 0 155 1 0 53 0 1 18 8 3 59 2 1 39 6 16 26 2 0 9 4 0 4 3 0 20 chain 23319 chr4 191154276 + 188473306 188473591 AluSg7 307 - 10 296 114102 170 1 2 114 chain 7355 chr4 191154276 + 188494713 188494814 L1PB4 2604 - 60 175 175052 38 4 18 59 chain 20369 chr4 191154276 + 188500644 188500909 AluSc 308 + 21 297 126000 105 0 1 93 0 15 22 1 0 28 4 0 12 chain 22435 chr4 191154276 + 188530565 188530822 L1PA7 6471 + 5735 5992 118320 257 chain 40148 chr4 191154276 + 188531151 188531630 L1PA7 6471 + 5985 6464 69109 419 3 1 23 0 2 34 chain 6948 chr4 191154276 + 188560084 188560180 L1PREC2 3366 - 1687 1798 177832 8 0 15 5 0 3 5 3 0 75 chain 124286 chr4 191154276 + 188578632 188580034 SVA_D 2077 + 21 2077 29598 7 1 0 548 0 40 58 0 77 165 1 539 622 chain 92798 chr4 191154276 + 188591007 188592343 L1PB1 5432 - 19 1317 38713 9 1 0 13 2 1 19 2 1 24 2 0 14 8 5 16 8 0 7 6 4 4 1 0 16 1 0 43 1 0 13 9 6 51 2 0 9 16 11 9 1 0 24 3 0 9 1 2 51 1 0 5 0 1 240 3 2 99 0 2 77 5 0 511 chain 44084 chr4 191154276 + 188597291 188597792 L1PA4 6152 - 12 514 64117 390 0 1 111 chain 4897 chr4 191154276 + 188606204 188606264 MER101 471 + 406 468 196300 20 0 2 40 chain 12229 chr4 191154276 + 188610658 188610793 L1PA4 6152 + 6008 6143 151299 135 chain 45057 chr4 191154276 + 188611346 188611834 L1PA3long 6157 - 15 503 62985 488 chain 36417 chr4 191154276 + 188616999 188617507 THE1B-int 1605 + 18 523 74346 89 0 3 95 0 4 127 0 1 5 0 2 27 0 3 31 0 1 24 38 21 72 chain 14375 chr4 191154276 + 188651356 188651749 MSTB 430 + 13 410 143282 25 200 204 168 chain 46500 chr4 191154276 + 188671789 188672482 THE1-int 844 + 3 701 61597 17 1 0 21 2 1 15 1 0 49 2 1 17 2 1 117 40 49 78 20 21 311 chain 62762 chr4 191154276 + 188686304 188687059 LTR17 781 + 0 780 51556 119 0 9 199 1 0 387 4 26 34 5 0 6 chain 184373 chr4 191154276 + 188691984 188694855 MER4-int 2692 - 0 2618 20554 117 0 10 57 1 0 15 1 0 31 1 0 176 0 5 8 5 3 88 3 1 43 0 1 7 0 1 29 4 8 79 1 0 62 0 2 58 1 0 127 8 12 105 299 0 65 0 2 112 2 3 11 2 3 17 5 4 23 3 14 8 0 5 227 1 0 33 0 2 16 2 1 23 16 18 84 3 4 78 0 1 129 0 4 163 0 1 8 6 11 452 2 0 7 12 11 8 2 0 25 chain 172841 chr4 191154276 + 188757895 188760713 L1PA11 4918 - 289 2740 21728 18 19 13 5 1 0 10 12 5 11 2 0 13 1 0 15 13 9 10 21 12 19 1 0 6 11 10 59 9 7 13 2 1 62 8 0 44 1 0 117 1 0 171 1 12 59 11 12 256 10 4 120 2 1 143 5 4 97 319 0 93 4 0 52 1 0 426 0 1 53 0 1 27 6 7 58 26 25 237 4 5 26 0 3 38 13 10 27 5 0 24 chain 315661 chr4 191154276 + 188764419 188768166 L1PA7 6471 + 2703 6469 12779 186 0 4 523 0 6 75 1 0 52 0 4 17 0 3 72 0 8 177 0 1 98 0 2 69 23 7 1192 0 1 394 0 5 22 1 0 77 1 3 622 0 1 145 chain 11796 chr4 191154276 + 188775800 188775936 L1PA4 6152 + 6004 6143 153057 6 0 3 130 chain 553069 chr4 191154276 + 188777939 188784072 L1PA3long 6157 - 2 6157 1059 310 0 1 66 0 1 521 0 1 547 0 14 1296 0 3 134 0 1 1547 0 1 1712 chain 18820 chr4 191154276 + 188786172 188786409 L1PA8A 6298 - 7 246 130612 39 4 5 61 0 1 133 chain 10051 chr4 191154276 + 188793470 188793758 L1PB1 5432 - 9 273 60323 5 1 0 14 1 0 12 1 0 22 1 0 23 3 1 14 1 0 5 10 8 11 16 6 6 1 0 16 1 0 44 6 5 10 2 1 26 0 1 25 2 0 9 chain 48731 chr4 191154276 + 188793829 188794365 L1PA3long 6157 - 2 538 59929 536 chain 16786 chr4 191154276 + 188794370 188794851 L1PB1 5432 - 329 804 60323 106 7 6 70 7 0 68 0 2 223 chain 88955 chr4 191154276 + 188797659 188798643 L1PA4 6152 - 9 997 40022 835 0 4 149 chain 26640 chr4 191154276 + 188798643 188798942 L1PA4 6152 + 4859 5158 95984 299 chain 12266 chr4 191154276 + 188803348 188803522 L1PA5 6144 - 0 172 151126 11 1 3 121 5 1 36 chain 20154 chr4 191154276 + 188803528 188803774 L1PA5 6144 + 5679 5963 126662 61 0 33 38 0 1 95 0 4 52 chain 29231 chr4 191154276 + 188817715 188818029 AluYb8 318 + 0 312 87904 132 2 0 180 chain 47910 chr4 191154276 + 188823052 188823643 LTR10C 591 - 0 591 60552 78 1 2 23 4 5 33 2 0 114 2 1 9 0 1 325 chain 3726 chr4 191154276 + 188839814 188839855 MER58B 340 - 14 55 211547 41 chain 417289 chr4 191154276 + 188844308 188850332 L1PB1 5432 - 12 5407 9596 16 2 1 12 1 0 21 1 0 24 2 0 6 64 46 14 1 0 44 1 0 15 2 1 28 1 0 25 2 0 10 4 0 11 1 0 12 1 0 20 3 0 9 2 3 7 1 0 4 0 1 274 5 4 87 1 9 93 0 2 165 19 2 220 1 0 242 1 0 25 4 5 230 4 5 306 0 1 13 0 1 84 0 1 183 0 1 123 1 0 172 312 9 340 7 0 216 5 7 302 5 4 43 301 0 333 0 2 26 1 0 153 1 0 243 1 0 147 0 1 250 0 3 325 7 12 18 1 2 79 1 0 171 0 13 12 0 2 104 chain 5566 chr4 191154276 + 188854071 188854138 MER53 195 - 128 195 189416 67 chain 198153 chr4 191154276 + 188869417 188871749 L1PA5 6144 - 3 5542 19345 6 4 0 134 6 1 12 2 7 683 1 5 175 0 15 32 0 1 722 0 4 476 0 3187 79 chain 166349 chr4 191154276 + 188875930 188877837 L1PA5 6144 + 4200 6135 22479 8 0 3 15 0 1 117 0 4 722 0 1 32 0 15 175 1 5 837 chain 31692 chr4 191154276 + 188877858 188878232 L1PA6 6164 + 5782 6156 81334 374 chain 48280 chr4 191154276 + 188895932 188896475 SVA_A 1864 + 1312 1863 60262 30 0 8 513 chain 93543 chr4 191154276 + 188912093 188913149 SVA_D 2077 - 0 2070 38497 99 0 4 274 1 3 189 0 1013 476 5 0 12 chain 4398 chr4 191154276 + 188918938 188918993 Tigger3c 601 + 53 108 201964 55 chain 20863 chr4 191154276 + 188921853 188922176 AluSq2 311 + 0 304 124418 125 7 6 24 14 1 19 6 7 116 6 0 6 chain 3495 chr4 191154276 + 188926702 188926745 MLT1B 390 - 296 339 215435 43 chain 24998 chr4 191154276 + 188937259 188937560 AluSg 306 + 4 306 104802 269 0 2 26 1 0 5 chain 26797 chr4 191154276 + 188955160 188955468 AluSp 311 - 0 310 96988 26 1 0 191 0 3 90 chain 23547 chr4 191154276 + 188979092 188979359 AluSp 311 - 44 311 112868 267 chain 53957 chr4 191154276 + 188986545 188987158 L1PA5 6144 - 4 618 56397 220 1 0 350 0 2 42 chain 58234 chr4 191154276 + 188989273 188989897 SVA_F 1814 + 1190 1814 53844 624 chain 21957 chr4 191154276 + 189007714 189007980 AluSg 306 + 37 306 120396 149 0 3 117 chain 8477 chr4 191154276 + 189055046 189055166 MER2 342 + 125 246 168415 83 1 0 21 1 2 5 0 1 9 chain 6480 chr4 191154276 + 189092472 189092644 MLT1D 503 + 281 453 181392 47 72 74 12 2 0 39 chain 6084 chr4 191154276 + 189100673 189100808 LTR12C 1709 + 902 1037 184548 59 41 0 16 1 42 18 chain 3730 chr4 191154276 + 189112484 189112534 MER66C 541 + 370 421 211469 30 1 2 19 chain 24616 chr4 191154276 + 189121427 189121726 AluSc 308 - 10 308 106908 41 1 0 257 chain 10859 chr4 191154276 + 189140552 189140706 LTR1 825 - 633 808 156747 6 0 2 68 7 14 24 0 12 49 chain 21428 chr4 191154276 + 189156999 189157256 AluSp 311 + 10 268 122414 153 0 1 104 chain 120085 chr4 191154276 + 189201404 189202806 L1PA5 6144 + 4745 6144 31028 652 0 3 288 9 10 437 7 0 9 chain 31928 chr4 191154276 + 189228294 189228756 MLT2A1 477 - 0 477 80970 31 21 43 10 6 0 188 0 1 13 0 1 10 0 1 9 5 2 66 1 0 102 chain 90846 chr4 191154276 + 189234481 189235943 L1PA7 6471 - 4 1155 39341 81 0 1 106 20 21 449 313 0 179 0 6 7 12 7 269 10 9 16 chain 191370 chr4 191154276 + 189240262 189243535 L1PB1 5432 + 2495 5281 19923 17 0 153 93 1 2 60 323 0 22 2 0 165 2 0 7 0 3 94 11 0 65 301 0 422 2 0 122 1 5 160 0 1 76 5 6 343 1 2 315 3 0 75 0 2 44 1 2 5 1 0 37 0 4 97 11 13 95 1 0 101 1 2 9 5 0 24 1 0 4 3 2 14 4 0 6 8 6 49 1 0 17 1 0 45 chain 12445 chr4 191154276 + 189240544 189240729 L1PA8 5853 + 5679 5853 150481 14 2 0 18 0 1 28 2 1 19 10 1 92 chain 34971 chr4 191154276 + 189285159 189285686 L1PBa 3878 + 1284 1802 76227 57 20 19 245 69 57 94 0 4 42 chain 22859 chr4 191154276 + 189305748 189306045 LOR1b 457 + 148 443 116294 99 3 1 195 chain 24359 chr4 191154276 + 189311373 189311731 THE1B 368 + 0 368 108324 159 11 10 29 8 6 10 0 4 10 7 16 5 1 0 67 0 1 51 chain 77681 chr4 191154276 + 189312009 189313008 LTR13 1007 - 0 1007 44663 31 3 1 263 4 13 15 7 0 55 2 1 238 8 9 145 0 10 153 2 0 73 chain 12739 chr4 191154276 + 189320724 189320960 MER30 238 + 7 238 149293 68 8 0 15 44 43 19 0 1 38 1 4 43 chain 48038 chr4 191154276 + 189359458 189360025 LTR22 571 + 0 571 60451 17 0 1 109 0 1 384 0 2 57 chain 28301 chr4 191154276 + 189381278 189381748 LTR12_ 688 + 0 687 91942 179 24 0 75 69 74 63 0 236 60 chain 31380 chr4 191154276 + 189384961 189385363 LOR1b 457 + 51 450 81852 97 3 0 302 chain 32497 chr4 191154276 + 189393675 189394076 L1PA7 6471 - 8 408 80027 55 3 0 174 6 8 163 chain 121316 chr4 191154276 + 189399151 189400892 L1PA6 6164 - 2 1435 30593 4 1 0 37 0 1 410 0 1 603 1 9 39 317 0 329 chain 12269 chr4 191154276 + 189412131 189412306 L1PA16 3655 - 1518 1689 151119 43 5 0 36 0 3 36 2 0 53 chain 28474 chr4 191154276 + 189432002 189432305 AluYa5 310 - 7 310 91290 303 chain 26021 chr4 191154276 + 189441059 189441415 THE1B 368 + 0 368 99942 15 2 0 25 0 5 14 0 1 47 2 3 33 5 13 16 1 0 196 chain 26910 chr4 191154276 + 189441696 189442046 THE1B 368 + 0 368 96597 43 1 12 121 1 0 130 5 13 49 chain 120305 chr4 191154276 + 189442046 189443947 THE1B-int 1605 + 0 1597 30937 35 0 3 187 3 4 13 1 2 159 13 14 9 0 25 67 304 1 41 0 1 638 40 6 198 1 2 192 chain 25426 chr4 191154276 + 189443955 189444300 THE1B 368 + 0 368 102566 40 0 15 121 1 0 72 1 2 56 5 13 49 chain 4040 chr4 191154276 + 189464578 189464648 Tigger3a 397 + 115 183 206790 17 8 6 45 chain 10970 chr4 191154276 + 189464671 189464879 MER30 238 - 0 238 156319 72 6 0 8 0 6 24 4 0 6 14 35 39 19 32 16 chain 548898 chr4 191154276 + 189479423 189485441 L1PA2 6032 - 3 6032 1590 332 1 2 1457 0 4 845 0 2 825 1 0 357 0 5 887 0 1 198 1 0 858 1 0 183 0 1 72 chain 20880 chr4 191154276 + 189494689 189495051 THE1B 368 + 0 368 124359 81 2 3 27 1 3 6 2 0 56 40 38 14 7 15 63 7 6 56 chain 7417 chr4 191154276 + 189516892 189516977 L1PA3long 6157 + 6072 6157 174677 85 chain 51341 chr4 191154276 + 189536401 189537062 LTR12_ 688 - 0 688 58073 84 1 0 35 0 8 48 1 0 47 7 18 185 0 9 5 0 1 248 chain 454445 chr4 191154276 + 189593954 189600016 L1PA8 5853 + 50 5848 8597 11 14 12 9 1 0 13 53 17 37 0 1 152 18 6 302 1 0 20 3 0 24 4 5 1095 0 1 126 3 9 235 220 0 496 0 1 265 0 1 26 11 12 4 0 1 66 1 0 434 1 2 779 1 0 127 0 1 30 1 0 175 4 0 63 3 0 115 1 8 246 6 7 25 0 2 553 1 0 44 2 0 23 1 2 46 1 0 55 8 7 11 0 1 7 1 0 88 chain 7850 chr4 191154276 + 189596185 189596275 L1P3 4156 + 2737 2827 171998 90 chain 22607 chr4 191154276 + 189629585 189629850 AluY 311 + 38 304 117555 94 0 1 171 chain 38922 chr4 191154276 + 189643147 189643606 L1PA6 6164 - 3 463 70837 14 0 1 445 chain 14318 chr4 191154276 + 189655284 189656100 LTR12D 1347 - 397 836 143504 24 399 173 42 159 18 125 46 36 21 chain 3211 chr4 191154276 + 189655800 189655834 LTR12D 1347 - 853 887 220730 34 chain 1767 chr4 191154276 + 189656129 189656215 LTR12D 1347 - 674 760 176394 86 chain 3861 chr4 191154276 + 189661911 189661973 MLT2D 439 - 321 385 209445 27 5 7 30 chain 112772 chr4 191154276 + 189670666 189672647 L1PA14 3548 - 95 1739 33454 31 21 29 13 19 17 22 14 9 11 0 9 91 1 0 84 1 0 6 2 0 13 8 4 109 24 20 30 1 0 4 1 0 9 12 10 156 330 0 65 0 1 22 0 1 153 1 0 335 1 0 334 1 0 56 chain 14743 chr4 191154276 + 189676237 189676547 LTR12C 1709 + 650 877 142128 33 82 0 66 19 10 7 0 9 62 1 0 40 chain 52348 chr4 191154276 + 189684142 189684766 L1PA7 6471 - 13 642 57400 134 0 1 466 0 4 24 chain 13048 chr4 191154276 + 189768923 189769140 MER30 238 + 0 238 148039 15 6 22 66 18 26 70 3 0 39 chain 88013 chr4 191154276 + 189771918 189773019 MER11A 1151 + 0 1151 40366 79 0 8 143 1 0 64 0 11 380 2 1 164 20 52 39 0 1 41 0 1 101 1 0 66 chain 228576 chr4 191154276 + 189780134 189782916 L1PA7 6471 - 7 2821 17383 37 6 28 149 0 1 628 1 0 193 1 0 4 1 2 123 0 1 779 0 3 251 0 1 434 0 1 15 1 5 159 chain 32766 chr4 191154276 + 189811133 189811614 MLT2A1 477 - 1 477 79585 49 1 0 4 15 22 16 0 2 44 7 0 97 8 0 12 3 0 56 11 15 18 0 1 140 chain 11092 chr4 191154276 + 189812471 189812673 L1MA4A 3247 - 75 273 155833 24 42 38 9 1 0 5 0 1 121 chain 122946 chr4 191154276 + 189834518 189836094 THE1B-int 1605 - 0 1605 30067 572 1 0 4 0 1 350 0 3 219 1 26 132 5 6 46 1 0 4 0 1 241 chain 25132 chr4 191154276 + 189845772 189846069 AluY 311 + 0 296 104109 26 1 0 270 chain 14909 chr4 191154276 + 189886386 189886597 THE1B 368 + 161 364 141608 11 2 1 19 4 0 99 12 9 64 chain 23789 chr4 191154276 + 189893057 189893418 THE1B 368 + 0 368 111539 44 27 42 86 1 0 20 4 0 99 10 7 70 chain 5249 chr4 191154276 + 189926048 189926107 Tigger1 2417 + 1487 1546 192534 59 chain 30100 chr4 191154276 + 189969712 189970030 AluYb8 318 - 0 318 84496 318 chain 59879 chr4 191154276 + 189979424 189980178 LTR17 781 + 0 781 52886 327 1 0 94 2 3 141 0 1 144 1 27 44 chain 79025 chr4 191154276 + 189996483 189997419 L1PA7 6471 + 5518 6459 44047 100 1 0 439 0 1 79 0 1 58 0 4 259 chain 18088 chr4 191154276 + 190057695 190058014 THE1B 368 + 0 327 132623 106 28 29 42 22 18 5 2 0 14 0 4 8 3 13 4 1 0 84 chain 565059 chr4 191154276 + 190058239 190064258 L1HS 6032 + 6 6032 202 575 0 2 1210 0 5 4234 chain 29181 chr4 191154276 + 190072044 190072592 LTR10E 629 + 0 599 88145 20 1 0 137 0 60 160 12 11 26 101 98 22 1 0 14 25 22 29 chain 70058 chr4 191154276 + 190110203 190111236 MER11A 1151 - 2 1151 48368 163 4 5 59 0 1 37 18 0 22 8 41 131 5 7 127 2 1 5 0 1 4 0 7 10 7 1 86 0 1 60 1 2 84 4 0 66 1 0 74 20 95 9 0 24 26 chain 23602 chr4 191154276 + 190146733 190147009 AluYk4 311 + 11 288 112576 109 1 2 166 chain 100344 chr4 191154276 + 190157288 190158566 LTR12C 1709 + 0 1709 36678 34 5 14 416 0 2 184 0 278 143 0 47 106 11 4 89 4 5 70 0 102 128 4 3 84 chain 475794 chr4 191154276 + 190161149 190167308 L1PA6 6164 - 2 6164 7862 5 3 0 78 3 4 56 3 4 11 3 4 173 0 1 510 0 5 109 23 11 505 7 8 35 6 2 214 1 5 53 9 13 41 6 5 235 0 1 98 0 11 172 0 1 101 0 2 5 2 0 161 6 5 276 8 14 38 28 11 174 6 7 221 4 5 19 0 4 423 0 1 877 19 21 403 2 1 206 1 18 49 36 33 150 1 0 115 77 58 107 0 2 134 1 0 4 1 2 145 chain 39150 chr4 191154276 + 190203041 190203573 MLT2A2 560 + 0 560 70540 169 4 11 10 7 15 186 12 22 59 0 2 15 0 1 70 chain 180850 chr4 191154276 + 190217440 190219422 L1PA3long 6157 - 0 1983 20914 778 0 1 1204 chain 31128 chr4 191154276 + 190219422 190219762 L1PA3long 6157 + 3854 4194 81653 340 chain 29426 chr4 191154276 + 190253853 190254160 AluYb8 318 - 11 318 86958 307 chain 204501 chr4 191154276 + 190269892 190272197 L1PA4 6152 - 9 2313 18886 132 7 0 122 0 1 75 0 1 1181 1 0 179 0 1 99 0 4 509 chain 72107 chr4 191154276 + 190272210 190273027 L1PA4 6152 + 2993 3804 47431 190 1 0 500 5 0 121 chain 19824 chr4 191154276 + 190310790 190311131 THE1B 368 - 10 357 127736 45 6 5 64 61 67 57 2 0 6 0 3 100 chain 38146 chr4 191154276 + 190313121 190313591 LTR7C 471 - 0 471 71917 374 0 1 96 chain 98618 chr4 191154276 + 190313653 190314780 L1PA4 6152 - 6 1137 37122 143 2 1 5 0 1 694 0 4 283 chain 35511 chr4 191154276 + 190314780 190315186 L1PA4 6152 + 4597 5005 75418 190 0 2 216 chain 32642 chr4 191154276 + 190323742 190324175 THE1D-int 1627 + 0 536 79779 333 1 0 6 5 109 88 chain 52661 chr4 191154276 + 190324855 190325420 L1PA2 6032 + 5465 6030 57208 565 chain 28046 chr4 191154276 + 190348480 190348828 L1PA5 6144 + 5799 6142 92836 79 1 0 257 4 0 7 chain 27819 chr4 191154276 + 190389851 190390151 AluYg6 310 + 0 300 93635 300 chain 99540 chr4 191154276 + 190391677 190392783 L1PA3long 6157 - 0 1111 36897 662 0 1 180 0 4 264 chain 36116 chr4 191154276 + 190400692 190401143 LTR7 482 - 0 482 74747 49 12 14 31 0 2 90 0 31 39 0 1 204 5 0 21 chain 285928 chr4 191154276 + 190402217 190406107 HERVH-int 3825 - 0 3825 14293 314 0 2 56 0 1 4 100 2 26 10 10 43 45 253 33 9 11 293 11 13 200 1 0 89 0 5 754 6 33 241 0 1 218 15 0 444 1 0 49 2 1 7 62 0 23 2 1 42 27 3 17 0 17 15 70 0 24 2 1 9 1 0 38 66 0 309 0 11 212 chain 4163 chr4 191154276 + 190402591 190402637 HERVH-int 3825 + 3461 3507 199454 46 chain 3626 chr4 191154276 + 190405188 190405235 HERVH-int 3825 - 3123 3208 213236 32 0 38 15 chain 2010 chr4 191154276 + 190405403 190405424 HERVH-int 3825 - 3127 3148 238550 21 chain 2101 chr4 191154276 + 190405525 190405547 HERVH-int 3825 - 3293 3315 237639 22 chain 36583 chr4 191154276 + 190406109 190406557 LTR7 482 - 0 482 74122 49 12 14 124 1 32 44 0 1 218 chain 52736 chr4 191154276 + 190406557 190407310 L1PA8 5853 + 5105 5853 57165 39 1 2 418 4 3 41 2 0 69 13 11 39 15 14 16 4 3 25 0 1 67 chain 91152 chr4 191154276 + 190409084 190410116 L1PA4 6152 + 5091 6124 39247 947 0 1 85 chain 16728 chr4 191154276 + 190476595 190476802 AluY 311 + 42 251 136318 90 0 1 5 5 6 107 chain 6995 chr4 191154276 + 190536116 190536252 LTR12C 1709 - 824 918 177501 48 42 0 46 chain 109570 chr4 191154276 + 190537040 190538364 LTR12C 1709 - 0 1709 34304 145 0 101 181 1 2 52 0 4 112 1 0 42 0 2 89 0 278 399 1 2 252 2 1 47 chain 8883 chr4 191154276 + 190565496 190565706 Tigger3a 397 + 139 365 166219 9 0 10 62 85 91 54 chain 49500 chr4 191154276 + 190571669 190572338 PABL_B 668 + 0 668 59385 73 15 16 146 1 0 39 5 4 72 1 0 162 1 2 154 chain 7701 chr4 191154276 + 190600409 190600495 LTR12D 1347 - 824 910 172935 86 chain 103542 chr4 191154276 + 190615835 190617372 LTR12C 1709 - 0 1709 35854 84 1 0 397 11 4 16 24 0 83 0 49 37 0 2 200 1 0 35 0 119 150 11 8 51 3 4 9 11 0 40 6 7 15 18 61 26 0 3 13 85 86 210 chain 27787 chr4 191154276 + 190624640 190624937 AluYb8 318 + 0 295 93746 132 2 0 163 chain 38748 chr4 191154276 + 190639767 190640230 LTR2 463 + 0 463 71081 463 chain 4061 chr4 191154276 + 190671029 190671178 L1MD3 1191 - 57 198 206470 37 82 76 21 2 0 7 chain 102856 chr4 191154276 + 190718138 190719281 L1PA4 6152 - 1151 2299 36036 653 3 8 487 chain 104909 chr4 191154276 + 190719284 190720429 L1PA4 6152 + 5006 6151 35522 811 0 1 184 1 0 149 chain 69456 chr4 191154276 + 190727479 190728597 LTR12D 1347 - 12 1347 48627 45 21 0 90 0 200 169 5 37 88 27 20 28 37 0 48 29 27 16 0 31 200 14 40 50 0 1 21 0 3 8 38 29 184 chain 2073 chr4 191154276 + 190727952 190727989 LTR12D 1347 - 730 767 164336 37 chain 5615 chr4 191154276 + 190735307 190735371 THE1D 372 - 303 367 188925 64 chain 147166 chr4 191154276 + 190798656 190800285 L1PA4 6152 + 4521 6152 25006 344 0 1 1146 0 1 139 chain 27938 chr4 191154276 + 190810366 190810743 THE1C 375 - 0 375 93210 26 1 0 16 0 1 87 6 0 11 4 6 33 1 2 11 0 1 181 chain 5243 chr4 191154276 + 190811031 190811171 Ricksha_c 1012 + 91 216 192594 39 33 29 9 1 0 7 5 0 27 7 2 12 chain 320663 chr4 191154276 + 190847449 190851259 HERVH-int 3825 + 0 3825 12571 333 1 0 199 5 0 37 13 11 9 4 0 14 7 1 14 1 38 44 1 0 56 0 1 6 0 2 14 0 1 53 0 3 72 11 4 618 1 0 292 1 4 5 3 0 58 9 5 973 0 1 759 1 2 196 chain 13580 chr4 191154276 + 190857974 190858182 L1PA16 3655 - 64 271 146056 14 16 14 142 5 6 31 chain 528064 chr4 191154276 + 190884925 190890991 L1PA4 6152 + 21 6143 4396 454 6 10 388 0 2 75 0 4 17 0 1 5 1 0 85 0 2 77 0 2 29 0 4 239 1 6 278 0 5 140 0 4 66 1 4 282 0 2 110 0 3 71 0 4 696 0 4 70 0 2 88 0 3 2029 0 4 15 1 0 842 chain 40161 chr4 191154276 + 190892485 190892924 SVA_D 2077 + 1636 2075 69095 439 chain 152738 chr4 191154276 + 190910979 190912724 L1PA4 6152 - 0 1749 24260 6 0 5 1265 1 0 473 chain 80328 chr4 191154276 + 190912724 190913626 L1PA4 6152 + 3504 4407 43461 732 0 1 170 chain 64588 chr4 191154276 + 190927787 190928575 L1PB1 5432 - 759 1545 50754 43 4 0 423 0 2 318 chain 45355 chr4 191154276 + 190928583 190929346 L1PB1 5432 + 4661 5404 62650 13 0 3 117 0 8 181 2 1 13 1 0 106 13 11 24 1 0 9 1 0 7 9 5 9 2 0 52 2 1 16 2 1 42 1 0 16 24 12 18 3 1 4 1 0 11 6 4 24 1 0 6 6 9 8 1 0 11 chain 33898 chr4 191154276 + 190937414 190938016 LTR2 463 - 0 463 77776 65 16 17 120 0 1 198 157 16 46 chain 28270 chr4 191154276 + 190972712 190973051 LTR17 781 + 445 781 92040 325 1 0 4 2 0 7 chain 107102 chr4 191154276 + 190973372 190975160 L1PA8 5853 - 0 1471 34943 84 15 14 14 2 1 52 2 1 8 4 3 10 17 18 39 2 0 18 1 0 27 1 0 476 10 11 15 327 0 49 0 4 87 0 2 17 0 1 43 0 5 170 0 4 77 5 6 109 0 1 77 8 6 22 chain 18244 chr4 191154276 + 191014426 191014719 L1PA14 3548 + 3171 3456 132224 161 1 0 10 5 1 23 0 13 10 34 19 7 1 0 41 chain 157445 chr4 191154276 + 191018324 191020150 L1PA5 6144 - 0 1831 23670 138 0 7 9 7 0 595 0 3 34 2 1 67 1 0 11 0 4 962 chain 86529 chr4 191154276 + 191027413 191028418 LTR5B 1012 - 0 1012 40960 81 0 1 828 0 2 88 0 4 8 chain 235008 chr4 191154276 + 191029475 191032585 HERVK-int 6823 - 606 3738 17028 17 1 0 11 17 11 22 13 10 74 4 2 8 1 0 5 3 0 43 9 8 124 1 0 34 1 0 100 1 0 23 1 0 69 16 16 11 1 0 102 5 4 9 1 0 13 0 1 4 11 10 153 1 3 159 11 12 224 5 6 329 0 1 261 3 0 5 0 3 724 1 0 4 0 1 31 0 23 14 0 4 60 0 3 239 1 12 130 chain 86434 chr4 191154276 + 191033696 191034701 LTR5B 1012 - 0 1007 40995 910 0 2 95 chain 116599 chr4 191154276 + 191037623 191038969 L1PA4 6152 - 1 1334 32260 70 8 0 85 2 0 104 1 0 705 12 10 359 chain 168786 chr5 180915260 + 22510 24457 L1PA5 6144 + 4198 6142 22186 18 4 0 121 0 4 287 1 0 63 0 4 1082 2 0 358 4 0 7 chain 67904 chr5 180915260 + 27318 28346 MER11C 1089 + 0 1063 49285 220 0 5 17 9 18 55 4 8 43 0 11 9 1 0 12 0 2 133 84 83 74 1 5 4 1 0 38 0 1 25 0 1 101 0 1 54 10 9 108 0 1 25 chain 18743 chr5 180915260 + 29077 29395 L1PA14 3548 - 106 403 130841 27 1 0 17 1 0 8 1 0 8 30 18 20 6 2 10 1 0 111 2 1 75 chain 106716 chr5 180915260 + 34745 36032 L1PA7 6471 + 5178 6467 35058 256 0 7 179 1 0 6 8 0 174 0 1 418 7 8 229 0 2 9 chain 516341 chr5 180915260 + 60243 66374 L1PA6 6164 - 4 6163 5542 145 1 13 80 0 3 227 1 0 377 2 0 5 8 14 930 0 4 1061 0 1 29 1 4 70 0 1 11 1 2 199 14 17 200 0 1 440 0 1 229 20 7 395 0 2 246 1 0 373 1 2 225 0 6 183 1 0 147 2 1 313 0 1 58 0 1 135 chain 6457 chr5 180915260 + 66498 66577 MER30B 195 + 115 194 181583 79 chain 17163 chr5 180915260 + 67712 67935 THE1C 375 + 152 375 135131 95 4 5 98 1 0 25 chain 119088 chr5 180915260 + 67935 69416 THE1C-int 1605 + 0 1605 31375 14 2 1 99 0 54 161 0 6 110 0 7 332 0 12 26 0 45 232 0 1 505 chain 28996 chr5 180915260 + 69416 69778 THE1C 375 + 14 375 89003 336 1 0 25 chain 4709 chr5 180915260 + 98887 98943 L1MB5 1630 - 1385 1441 198400 56 chain 8837 chr5 180915260 + 119433 119549 MER85 139 + 14 139 166451 85 0 10 7 1 0 23 chain 54523 chr5 180915260 + 127840 128581 MER4E1 777 - 7 777 56016 148 3 4 62 13 36 114 0 1 73 0 1 206 30 34 30 1 0 61 chain 65724 chr5 180915260 + 131234 132022 L1PA6 6164 - 2 791 50237 8 0 4 129 8 0 10 1 9 170 3 0 459 chain 83099 chr5 180915260 + 132407 133505 L1PB1 5432 - 849 1956 42291 53 8 13 137 7 6 402 5 6 91 0 1 142 2 5 251 chain 38501 chr5 180915260 + 133511 134028 L1PB1 5432 + 4579 5103 71436 50 1 0 79 0 1 66 0 1 83 0 2 91 1 0 62 0 2 39 0 1 4 5 4 15 0 3 21 chain 22284 chr5 180915260 + 152840 153185 THE1D 372 + 9 372 118982 95 0 8 50 0 1 6 45 55 116 1 0 32 chain 84652 chr5 180915260 + 196898 197896 LTR5A 1029 - 0 1029 41657 78 0 6 98 0 4 71 0 1 262 4 5 341 0 13 89 0 2 42 0 4 13 chain 26636 chr5 180915260 + 234256 234559 AluY 311 + 4 308 97524 128 0 1 175 chain 14162 chr5 180915260 + 234672 234920 MER2 342 + 104 315 144005 5 1 0 74 53 16 103 0 1 12 chain 35775 chr5 180915260 + 242310 242767 MER9a3 513 + 2 513 75172 16 8 22 139 0 1 78 0 17 43 0 21 95 1 2 77 chain 381889 chr5 180915260 + 244091 249420 HERVK9-int 4720 + 36 4701 10703 13 8 5 4 1 0 66 1 0 8 1 0 30 13 12 216 7 8 396 1 2 39 0 4 107 0 3 82 1 0 792 2 0 15 0 1 101 130 0 89 586 0 194 0 3 93 0 4 721 4 10 245 0 1 11 1 0 35 0 2 6 0 5 180 5 24 25 11 15 500 5 6 362 0 1 138 1 7 32 0 1 51 chain 6617 chr5 180915260 + 245997 246069 HERVK9-int 4720 + 1873 1945 180327 72 chain 4673 chr5 180915260 + 246560 246618 HERVK9-int 4720 + 1973 2031 198844 58 chain 13621 chr5 180915260 + 246625 246793 HERVK9-int 4720 + 1971 2139 145900 168 chain 37389 chr5 180915260 + 249440 249910 MER9a3 513 + 1 513 72973 20 0 2 156 0 1 78 0 17 41 0 21 96 5 6 74 chain 18196 chr5 180915260 + 327623 327890 L1PB4 2604 - 142 408 132338 55 2 1 20 2 0 23 6 8 159 chain 30744 chr5 180915260 + 327901 328247 L1PA4 6152 - 1 347 82962 346 chain 7728 chr5 180915260 + 333215 333307 AluJr 308 - 201 293 172726 92 chain 15090 chr5 180915260 + 340409 340595 MLT1A 405 - 0 186 141059 186 chain 10308 chr5 180915260 + 545135 545304 LTR12 884 + 78 378 159096 37 1 0 66 1 0 18 15 148 31 chain 14474 chr5 180915260 + 573046 573248 MER30 238 + 25 238 142970 58 1 0 25 4 15 32 0 4 31 3 0 48 chain 55016 chr5 180915260 + 577026 577790 LTR12 884 - 11 884 55697 117 0 8 71 0 103 188 10 8 37 0 1 114 15 17 126 1 0 4 3 1 53 1 0 12 0 1 12 chain 3712 chr5 180915260 + 589677 589723 MADE1 96 - 50 96 211754 46 chain 27388 chr5 180915260 + 589976 590336 THE1C 375 - 11 375 95007 182 0 3 26 8 9 144 chain 7218 chr5 180915260 + 605183 605314 MSTB 430 - 15 152 175948 19 0 1 51 32 37 29 chain 3803 chr5 180915260 + 702316 702360 MSTB 430 + 377 421 210338 44 chain 26580 chr5 180915260 + 702585 703014 LTR7B 505 + 0 503 97723 105 0 10 69 35 11 27 8 97 19 15 15 9 1 0 24 0 1 54 7 6 56 chain 277868 chr5 180915260 + 703016 706936 HERVH-int 3825 + 0 3825 14755 450 186 0 82 191 0 38 1 0 10 1 0 24 1 52 42 2 1 24 8 7 23 1 2 24 1 0 291 13 14 152 16 1 448 4 31 110 0 1 177 1 5 728 0 1 238 150 362 131 1 0 123 3 8 225 chain 3570 chr5 180915260 + 703529 703649 HERVH-int 3825 + 513 567 188551 19 66 0 35 chain 5486 chr5 180915260 + 703734 703795 HERVH-int 3825 + 471 532 182143 61 chain 5039 chr5 180915260 + 703800 703856 HERVH-int 3825 + 476 532 194743 56 chain 3895 chr5 180915260 + 703861 703921 HERVH-int 3825 + 532 590 195151 38 1 0 10 1 0 10 chain 31154 chr5 180915260 + 708189 708616 LTR7B 505 + 0 503 82246 105 0 10 69 6 13 18 0 26 8 0 31 38 0 1 43 1 0 24 0 1 25 0 2 27 2 1 61 chain 5956 chr5 180915260 + 764988 765094 LTR12C 1709 + 858 964 123867 106 chain 5605 chr5 180915260 + 765094 765177 LTR12C 1709 + 686 769 121993 83 chain 29408 chr5 180915260 + 765177 765858 LTR12C 1709 + 650 1546 87031 160 0 40 119 0 41 58 2 17 6 0 1 17 277 395 42 chain 2565 chr5 180915260 + 765559 765586 LTR12C 1709 + 1010 1037 232260 27 chain 3476 chr5 180915260 + 779144 779183 MLT1A0 366 + 256 295 215717 39 chain 17151 chr5 180915260 + 789874 790218 THE1B 368 - 20 368 135163 36 7 6 56 69 73 41 24 25 111 chain 60665 chr5 180915260 + 827860 828598 SVA_D 2077 - 5 1110 52487 345 0 3 182 0 225 86 8 12 37 8 90 37 1 53 15 0 1 19 chain 79462 chr5 180915260 + 902700 903694 LTR13 1007 - 0 1007 43844 28 21 20 46 0 5 92 0 1 119 2 0 6 0 4 152 0 4 144 4 5 253 0 3 54 2 0 71 chain 44463 chr5 180915260 + 909650 910163 MER9a2 513 - 0 513 63622 68 3 1 26 0 1 361 0 1 55 chain 30867 chr5 180915260 + 918691 919133 MLT2A1 477 - 0 477 82741 6 0 4 27 15 49 6 4 0 50 13 16 139 0 1 5 9 6 168 chain 28934 chr5 180915260 + 972386 972786 L1PA8 5853 + 5018 5853 89303 47 1 443 56 1 0 44 2 0 65 7 6 9 1 0 52 2 1 19 1 0 93 chain 45200 chr5 180915260 + 986024 986537 MER9a1 513 - 0 513 62825 95 0 1 36 1 0 381 chain 17606 chr5 180915260 + 986766 986974 LTR14B 630 - 420 630 133979 189 0 2 19 chain 8506 chr5 180915260 + 987808 987912 L1P4 1494 - 569 673 168260 104 chain 10916 chr5 180915260 + 1118225 1118450 LTR8 732 + 586 732 156535 78 79 0 68 chain 25342 chr5 180915260 + 1138172 1138633 LTR12_ 688 - 11 688 103009 26 4 3 19 14 254 60 0 7 6 92 63 149 1 0 90 chain 8603 chr5 180915260 + 1148133 1148294 MER4D 903 + 727 895 167713 53 41 46 20 0 1 41 0 1 6 chain 2916 chr5 180915260 + 1172970 1173021 LTR12_ 688 - 0 291 226773 10 0 4 18 1 237 22 chain 54884 chr5 180915260 + 1267478 1268107 L1PA5 6144 + 5513 6144 55778 617 1 3 11 chain 8784 chr5 180915260 + 1274544 1274680 MER1B 344 - 5 143 166748 54 1 0 4 12 15 65 chain 146201 chr5 180915260 + 1302213 1304355 L1MA3 4352 - 38 2285 25131 26 1 0 6 1 0 24 8 6 5 1 0 12 4 0 84 41 112 18 0 1 67 14 17 193 0 2 7 1 0 25 11 16 46 3 6 238 10 8 9 1 0 320 0 1 175 16 13 394 10 25 73 11 20 52 1 0 15 0 1 114 0 2 45 15 24 45 chain 2556 chr5 180915260 + 1311305 1311387 MER51A 677 - 447 499 232407 26 41 11 15 chain 17091 chr5 180915260 + 1349716 1349919 L1PA6 6164 - 17 230 135344 124 0 10 79 chain 6312 chr5 180915260 + 1380262 1380353 LTR12D 1347 - 572 871 182700 59 6 214 26 chain 24422 chr5 180915260 + 1504549 1504847 AluSp 311 + 0 300 107955 106 0 2 192 chain 5223 chr5 180915260 + 1561133 1561194 LTR2C 499 + 438 499 192800 61 chain 74370 chr5 180915260 + 1567518 1568453 LTR5B 1012 - 14 1000 46328 368 0 2 77 5 6 50 0 26 95 0 9 223 1 14 116 chain 38094 chr5 180915260 + 1577976 1578447 MER9a3 513 - 0 513 71997 74 5 6 96 0 21 41 0 17 80 0 1 154 0 2 21 chain 370993 chr5 180915260 + 1578461 1583684 HERVK9-int 4720 - 18 4684 11056 52 0 1 37 0 4 137 0 1 361 5 6 463 2 1 41 0 1 34 5 24 191 0 2 35 1 0 11 0 1 124 0 207 571 0 6 165 0 3 208 804 0 984 0 2 233 1 2 136 0 1 95 0 6 382 13 12 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 5476 chr5 180915260 + 1580949 1581015 HERVK9-int 4720 - 2683 2749 190250 66 chain 5246 chr5 180915260 + 1581219 1581283 HERVK9-int 4720 - 2685 2749 192569 64 chain 4038 chr5 180915260 + 1585206 1585501 MER9a3 513 - 0 334 78469 77 6 7 92 0 21 41 0 17 79 chain 163707 chr5 180915260 + 1585531 1587428 SVA_D 2077 + 12 2072 22846 4 1 0 9 0 30 669 0 3 34 3 0 145 1 135 52 1 0 120 48 0 139 0 49 671 chain 2935 chr5 180915260 + 1586572 1586618 SVA_D 2077 + 1038 1084 86723 46 chain 2436 chr5 180915260 + 1587473 1587651 MER9a3 513 - 334 513 78469 123 2 0 14 1 2 20 0 2 18 chain 74832 chr5 180915260 + 1596091 1597059 LTR5_Hs 974 - 0 974 46095 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 177 0 1 289 chain 171432 chr5 180915260 + 1645778 1647688 L1PA5 6144 + 4213 6131 21894 744 0 1 270 0 3 60 0 4 836 chain 11541 chr5 180915260 + 1666646 1667030 MER30 238 - 3 238 154139 58 221 70 82 5 7 18 chain 30861 chr5 180915260 + 1668980 1669438 MER4A1 472 + 0 472 82750 19 0 1 90 0 1 108 4 31 15 21 0 126 13 15 32 0 4 15 1 0 4 0 1 10 chain 28507 chr5 180915260 + 1682475 1682780 AluYa5 310 + 0 303 91165 132 2 0 171 chain 4016 chr5 180915260 + 1697216 1697261 MADE1 96 + 50 95 207134 45 chain 177339 chr5 180915260 + 1697264 1699740 Charlie3 2679 - 128 2639 21219 112 0 1 9 0 2 5 3 1 355 1 3 51 14 9 42 3 4 62 5 6 12 13 19 123 0 1 38 60 6 392 7 8 216 0 1 98 0 3 32 16 10 102 0 4 13 6 4 151 0 3 164 5 63 148 6 25 193 0 1 19 chain 544872 chr5 180915260 + 1709933 1715939 L1PA3long 6157 + 2 6147 2088 145 5 6 624 1 129 835 0 2 547 0 4 98 0 4 2308 0 1 189 1 0 1253 chain 22394 chr5 180915260 + 1716793 1717313 LTR10E 629 + 0 574 118517 13 20 31 116 17 14 106 30 78 21 1 0 47 119 121 4 1 0 17 2 0 6 chain 13507 chr5 180915260 + 1894478 1894796 THE1B 368 + 0 346 146337 15 2 0 32 0 1 63 96 130 6 7 0 40 14 16 43 chain 33615 chr5 180915260 + 1894818 1895233 THE1B-int 1605 + 0 416 78221 390 0 1 25 chain 9943 chr5 180915260 + 1895319 1895436 L1PA7 6471 - 54 171 160868 117 chain 28851 chr5 180915260 + 1941151 1941456 AluYb8 318 - 11 316 89666 305 chain 173537 chr5 180915260 + 1953555 1955638 L1P2 5180 + 2 2081 21645 148 1 0 44 1 0 53 1 0 261 1 0 7 1 0 272 1 0 6 1 0 1188 0 3 97 chain 30392 chr5 180915260 + 1968409 1968732 L1HS 6032 - 2841 3164 83085 323 chain 266054 chr5 180915260 + 1968732 1971567 L1HS 6032 + 3197 6032 15390 2835 chain 38506 chr5 180915260 + 1980254 1980802 MLT2A2 560 + 0 560 71429 214 1 4 47 6 5 41 2 0 95 0 11 36 34 35 72 chain 11071 chr5 180915260 + 2017548 2017723 THE1D 372 + 147 324 155927 19 24 29 5 2 0 25 1 0 99 chain 47346 chr5 180915260 + 2027440 2028013 LTR12_ 688 + 15 688 60939 320 3 0 27 0 103 223 chain 21046 chr5 180915260 + 2054400 2054654 AluY 311 + 28 287 123746 107 6 4 127 0 7 14 chain 41440 chr5 180915260 + 2058289 2058821 THE1A-int 1579 - 1021 1579 67361 66 0 4 183 0 17 12 0 5 271 chain 28824 chr5 180915260 + 2058821 2059174 THE1A 353 - 0 353 89786 353 chain 140068 chr5 180915260 + 2061015 2062662 L1P3 4156 - 17 1665 26132 24 2 1 9 2 0 1244 0 1 16 0 1 52 0 1 148 0 1 150 chain 114287 chr5 180915260 + 2062669 2064039 L1PA7 6471 + 5096 6469 33000 612 5 6 594 15 15 58 0 1 69 1 2 16 chain 27077 chr5 180915260 + 2069580 2069929 THE1A 353 + 0 353 96013 212 4 6 81 0 2 52 chain 124557 chr5 180915260 + 2069929 2071490 THE1A-int 1579 + 0 1579 29522 24 10 11 430 7 14 100 0 1 101 0 1 4 1 0 490 1 2 329 0 9 28 1 0 35 chain 27801 chr5 180915260 + 2071490 2071842 THE1A 353 + 0 353 93687 109 1 2 242 chain 54614 chr5 180915260 + 2095624 2096232 L1PA4 6152 - 0 606 55959 5 2 0 601 chain 27718 chr5 180915260 + 2122938 2123312 THE1C 375 - 0 375 93979 129 0 4 44 17 14 184 chain 12679 chr5 180915260 + 2150738 2151002 THE1B 368 - 95 368 149546 30 61 66 41 24 28 108 chain 33600 chr5 180915260 + 2198838 2199309 L1PA7 6471 - 14 497 78239 16 0 11 53 8 0 8 1 9 50 1 2 177 1 0 106 1 2 49 chain 13688 chr5 180915260 + 2202264 2202429 L1PA5 6144 - 2 162 145637 7 5 0 153 chain 23521 chr5 180915260 + 2202430 2202694 L1PA5 6144 + 5701 5965 113013 264 chain 4342 chr5 180915260 + 2225691 2225743 MLT2A2 560 - 0 52 202699 52 chain 15791 chr5 180915260 + 2227237 2227426 MLT2A1 477 - 283 477 138979 22 0 4 27 0 1 140 chain 24225 chr5 180915260 + 2241381 2241670 AluSg 306 + 8 298 109061 271 0 1 18 chain 164239 chr5 180915260 + 2243689 2245791 HERVL-int 5654 + 3546 5637 22777 486 7 22 656 0 3 77 0 13 13 33 6 396 22 0 8 1 7 164 10 11 229 chain 45856 chr5 180915260 + 2264487 2265132 L1PA8A 6298 + 5647 6290 62172 62 4 5 166 6 0 183 5 6 130 0 1 41 25 26 23 chain 13192 chr5 180915260 + 2318759 2318911 L1PA7 6471 - 10 162 147500 152 chain 26384 chr5 180915260 + 2332197 2332558 THE1B 368 - 0 368 98474 73 2 1 126 1 0 82 10 4 22 1 16 44 chain 22364 chr5 180915260 + 2372846 2373181 L1PA8 5853 - 0 331 116438 91 5 4 17 2 1 19 7 8 20 1 0 14 1 0 18 0 2 51 2 0 44 1 0 42 chain 36563 chr5 180915260 + 2373181 2373623 L1PA5 6144 - 0 446 74154 11 1 4 392 0 1 38 chain 16226 chr5 180915260 + 2401102 2401324 THE1B-int 1605 + 0 231 137682 11 4 6 114 0 2 71 0 6 4 1 0 17 chain 20580 chr5 180915260 + 2402945 2403300 THE1B 368 + 8 368 125361 161 1 0 29 91 97 73 chain 27514 chr5 180915260 + 2436662 2436956 AluYf4 310 - 16 310 94618 294 chain 4543 chr5 180915260 + 2463087 2463151 MER96B 391 + 251 313 200312 34 2 0 28 chain 25160 chr5 180915260 + 2470737 2471103 THE1B 368 - 0 368 103956 176 2 0 11 13 12 27 8 12 60 5 6 64 chain 44024 chr5 180915260 + 2485137 2485667 L1PA5 6144 - 6 541 64175 140 21 26 369 chain 19833 chr5 180915260 + 2497866 2498132 LTR71B 605 - 344 605 127702 101 8 9 10 6 0 141 chain 17536 chr5 180915260 + 2546037 2546303 THE1D 372 - 0 294 134170 69 0 4 73 1 20 12 9 12 17 5 6 54 0 1 26 chain 33517 chr5 180915260 + 2565903 2566355 L1PA8 5853 + 5409 5853 78377 155 6 5 39 2 0 71 1 0 8 7 5 48 2 1 18 1 0 94 chain 28555 chr5 180915260 + 2599249 2599553 AluYb8 318 + 0 304 90938 304 chain 3366 chr5 180915260 + 2611485 2611521 L1PA6 6164 - 5 41 217741 36 chain 64078 chr5 180915260 + 2613813 2614576 L1PA8A 6298 - 7 771 50978 524 0 1 239 chain 80194 chr5 180915260 + 2649326 2650385 L1PA8 5853 - 0 1060 43507 90 8 7 15 3 2 51 15 13 66 7 5 40 1 0 90 0 1 461 1 3 109 0 5 102 chain 10371 chr5 180915260 + 2695208 2695330 THE1D 372 + 224 346 158826 122 chain 33278 chr5 180915260 + 2707553 2707921 L1PA4 6152 + 5783 6151 78758 368 chain 66415 chr5 180915260 + 2807217 2808017 L1PA7 6471 - 9 808 49909 90 1 0 709 chain 23164 chr5 180915260 + 2820300 2820567 AluY 311 + 0 283 114838 64 0 16 203 chain 56335 chr5 180915260 + 2854118 2854864 LTR12 884 - 24 884 54944 371 0 1 88 0 22 13 0 91 46 4 6 82 18 2 44 7 21 73 chain 25950 chr5 180915260 + 2898179 2898479 AluYk4 311 - 9 309 100213 300 chain 36881 chr5 180915260 + 2935190 2935646 L1PA5 6144 + 5684 6139 73681 207 1 0 90 18 18 140 chain 165181 chr5 180915260 + 2942107 2944248 L1PA8 5853 - 0 2136 22631 93 6 5 14 15 14 14 4 0 6 16 19 9 5 4 65 2 0 24 0 2 22 1 0 475 2 1 81 2 0 146 4 3 418 0 1 33 0 1 317 0 1 279 0 1 88 chain 17226 chr5 180915260 + 2961268 2961595 THE1B 368 - 0 368 134985 29 27 33 4 0 1 58 42 49 127 8 23 14 0 12 18 chain 18866 chr5 180915260 + 2972073 2972288 L1PA4 6152 + 5936 6152 130471 65 0 1 150 chain 5028 chr5 180915260 + 3030402 3030464 L1MC1 2226 + 1743 1805 194846 62 chain 35530 chr5 180915260 + 3053138 3053540 L1PA5 6144 + 5732 6135 75502 262 0 1 140 chain 16000 chr5 180915260 + 3090391 3090574 L1PA5 6144 - 6 189 138348 183 chain 17115 chr5 180915260 + 3091110 3091314 L1PA4 6152 - 9 214 135267 138 6 7 60 chain 3020 chr5 180915260 + 3246968 3247000 LTR23 429 - 82 114 224610 32 chain 96389 chr5 180915260 + 3247932 3249101 L1PA7 6471 - 3 1177 37703 152 0 1 13 7 8 360 1 0 212 0 3 19 5 8 71 2 0 327 chain 176320 chr5 180915260 + 3255669 3257621 L1PA3long 6157 + 4203 6157 21323 1103 0 1 629 3 4 217 chain 102820 chr5 180915260 + 3291077 3292214 L1PA4 6152 + 5010 6152 36049 272 0 4 752 0 1 113 chain 20145 chr5 180915260 + 3319197 3319422 L1PA3long 6157 - 267 492 126692 225 chain 22526 chr5 180915260 + 3319428 3319685 L1PA3long 6157 + 5898 6157 117907 109 0 1 141 0 1 7 chain 28969 chr5 180915260 + 3327320 3327630 AluYa5 310 - 0 310 89137 310 chain 2592 chr5 180915260 + 3355923 3356025 MLT2B4 540 + 6 118 231804 18 58 68 26 chain 16886 chr5 180915260 + 3403879 3404074 L1PA5 6144 - 0 195 135874 195 chain 75057 chr5 180915260 + 3407398 3408226 L1PA3long 6157 - 0 827 45989 333 1 0 494 chain 69760 chr5 180915260 + 3408226 3408997 L1PA3long 6157 + 4566 5337 48380 771 chain 24617 chr5 180915260 + 3435872 3436230 L1PB2 3958 - 120 472 106903 63 1 0 21 13 11 61 2 1 64 1 0 70 3 2 59 chain 548755 chr5 180915260 + 3439131 3445173 L1PA3long 6157 + 0 6156 1606 152 0 1 118 0 108 810 0 3 4814 0 3 143 1 0 4 chain 4264 chr5 180915260 + 3446683 3446786 HAL1-2a_MD 234 - 15 119 203709 14 4 10 23 1 16 8 20 0 33 chain 49370 chr5 180915260 + 3476773 3477318 L1PA4 6152 - 17 561 59467 317 1 0 227 chain 22581 chr5 180915260 + 3478520 3478801 L1PA7 6471 - 7 287 117667 135 0 1 4 1 0 26 5 4 110 chain 29190 chr5 180915260 + 3478803 3479185 L1P3 4156 + 3758 4139 88100 272 15 17 60 2 0 7 2 1 24 chain 52811 chr5 180915260 + 3480390 3480982 L1PA3long 6157 + 5572 6157 57126 578 7 0 7 chain 20861 chr5 180915260 + 3486001 3486371 THE1B 368 - 0 368 124425 97 1 0 4 0 1 16 12 11 9 1 0 12 5 9 9 1 0 5 31 27 51 10 11 106 chain 29719 chr5 180915260 + 3499273 3499586 AluYb8 318 + 1 314 85764 313 chain 29988 chr5 180915260 + 3502323 3502641 AluYb8 318 - 0 318 84840 318 chain 3153 chr5 180915260 + 3516329 3516365 MSTA 426 + 342 378 221874 36 chain 38931 chr5 180915260 + 3534520 3534996 L1PA6 6164 + 5689 6158 70826 142 0 1 141 1 0 6 19 0 23 0 10 12 1 0 35 0 3 96 chain 32861 chr5 180915260 + 3550573 3551026 L1PA11 4918 + 3448 3903 79434 36 0 2 173 2 0 7 15 19 6 2 0 212 chain 510090 chr5 180915260 + 3663794 3670479 L1PA7 6471 - 4 6466 6155 215 0 1 44 0 1 69 0 1 103 12 27 143 0 4 149 0 1 88 2 0 147 0 5 41 1 0 4 0 1 308 0 1 129 0 1 70 13 18 61 0 1 624 0 3 8 1 0 196 0 1 499 3 0 411 312 6 447 1 2 115 0 2 20 0 2 149 0 1 40 0 13 499 0 3 29 0 6 155 0 5 232 19 17 6 0 1 154 1 0 75 0 5 426 2 11 49 24 24 82 0 1 101 1 3 81 11 12 313 chain 19629 chr5 180915260 + 3672956 3673318 THE1D 372 + 0 372 128313 72 10 20 12 0 1 6 4 4 39 72 71 147 chain 12019 chr5 180915260 + 3682821 3683067 L1PB1 5432 - 10 234 152123 18 1 0 12 1 0 22 7 6 18 2 0 14 1 0 9 2 0 15 8 0 7 1 0 5 2 0 16 1 0 44 18 16 22 chain 23719 chr5 180915260 + 3686468 3686824 THE1B 368 - 0 368 111945 125 41 51 23 1 0 80 7 10 79 chain 127247 chr5 180915260 + 3721251 3722982 L1PA10 4194 - 1348 3112 28754 112 0 1 82 4 5 13 6 7 191 12 11 46 0 1 4 2 1 87 0 4 44 2 0 153 0 1 227 3 5 27 0 6 19 0 1 482 0 1 71 0 15 57 3 6 10 14 13 37 0 1 23 chain 29661 chr5 180915260 + 3776508 3777157 L1PB1 5432 - 8 519 86021 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 15 7 4 14 9 0 12 3 0 21 1 0 36 9 8 15 2 1 50 30 23 33 1 0 9 110 7 177 3 0 8 chain 37401 chr5 180915260 + 3788487 3788937 LTR7 482 - 0 482 72950 49 13 14 132 1 32 255 chain 3316 chr5 180915260 + 3835639 3835680 Tigger3c 601 - 507 548 218666 41 chain 60322 chr5 180915260 + 3847538 3848255 HERVL-int 5654 + 3300 4017 52671 717 chain 18657 chr5 180915260 + 3892513 3892725 L1PA4 6152 + 5938 6152 131060 64 0 1 35 0 1 113 chain 13423 chr5 180915260 + 3895222 3895414 L1PA8 5853 - 0 188 146607 92 2 1 19 2 1 47 1 0 14 2 1 13 chain 125401 chr5 180915260 + 3899962 3901372 L1P1 4361 - 33 1443 29278 23 1 0 155 1 0 216 0 2 1014 chain 13617 chr5 180915260 + 3901373 3901517 L1PA2 6032 + 5885 6029 145909 144 chain 25424 chr5 180915260 + 3910902 3911191 L1PA4 6152 + 5858 6152 102578 283 0 5 6 chain 443076 chr5 180915260 + 3948213 3953880 HERVL-int 5654 - 0 5654 8950 12 1 0 184 11 0 21 4 5 199 9 10 145 4 0 338 1 2 23 4 6 29 7 8 611 0 1 73 0 1 309 0 1 29 0 6 75 1 3 100 0 4 197 9 14 465 4 0 304 0 1 57 0 3 61 1 2 152 21 22 684 6 7 988 31 2 82 0 1 263 0 2 152 chain 6214 chr5 180915260 + 3955570 3955645 L1PA8 5853 + 5778 5853 183455 75 chain 3121 chr5 180915260 + 3971285 3971330 MLT2A1 477 - 14 54 222537 32 5 0 8 chain 2980 chr5 180915260 + 3973834 3973868 L1MEf 1413 + 1060 1094 225440 34 chain 39214 chr5 180915260 + 3986631 3987165 MLT2A2 560 + 6 560 70439 77 10 11 23 0 1 278 8 19 34 0 1 56 0 6 48 chain 3371 chr5 180915260 + 4021566 4021603 L1MB2 1706 - 383 420 217645 37 chain 9996 chr5 180915260 + 4034163 4034287 L1P3 4156 + 3914 4039 160598 73 0 1 51 chain 108953 chr5 180915260 + 4054785 4056550 L1PB1 5432 - 12 1674 34450 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 15 20 10 6 3 0 16 1 0 44 1 0 15 2 1 51 2 0 10 2 0 3 2 0 9 1 0 13 1 0 6 93 25 105 45 51 178 0 1 59 1 2 86 1 0 115 0 1 59 1 0 23 11 10 5 0 1 35 12 6 179 5 6 194 0 1 154 7 1 73 chain 98506 chr5 180915260 + 4056570 4057843 L1PB1 5432 + 2442 3720 37158 47 1 3 34 8 4 304 1 0 52 0 3 40 0 4 494 10 11 282 chain 28783 chr5 180915260 + 4090653 4090981 L1PA7 6471 + 6139 6467 89965 328 chain 44412 chr5 180915260 + 4139764 4140383 L1PA10 4194 + 3533 4147 63680 81 0 1 34 22 24 432 20 12 30 chain 53052 chr5 180915260 + 4148698 4149286 L1PA3long 6157 + 5569 6157 56984 588 chain 21234 chr5 180915260 + 4187069 4187407 THE1B 368 - 12 360 123080 62 1 0 85 62 58 96 0 15 32 chain 11054 chr5 180915260 + 4278667 4278808 MSTA 426 + 8 148 155994 122 1 0 18 chain 27793 chr5 180915260 + 4278825 4279126 AluYc3 301 - 0 301 93721 301 chain 25520 chr5 180915260 + 4288555 4288897 L1PA8 5853 + 5518 5853 102141 44 1 0 46 2 0 70 2 1 9 1 0 51 3 2 19 2 1 92 chain 33480 chr5 180915260 + 4298926 4299288 L1PA2 6032 + 5672 6032 78440 354 2 0 6 chain 5608 chr5 180915260 + 4302893 4302973 MADE1 96 - 0 96 189001 37 1 17 42 chain 29033 chr5 180915260 + 4344202 4344550 L1PA7 6471 - 7 355 88838 348 chain 26606 chr5 180915260 + 4352670 4353032 THE1C 375 - 0 366 97636 25 1 0 48 0 4 103 13 14 172 chain 9197 chr5 180915260 + 4368036 4368164 L1PA7 6471 + 6341 6470 164570 82 5 6 41 chain 15358 chr5 180915260 + 4435081 4435297 L1MA3 4352 - 4049 4263 140320 56 1 0 68 0 1 6 6 5 11 1 0 67 chain 30233 chr5 180915260 + 4459015 4459392 MLT2A1 477 + 7 385 84105 161 5 2 9 0 1 22 0 3 180 chain 444710 chr5 180915260 + 4459559 4465365 HERVL-int 5654 + 4 5654 8914 307 4 5 258 0 1 306 10 11 16 0 2 14 11 14 54 0 1 401 0 3 98 5 4 414 1 2 361 1 2 81 2 1 118 0 1 533 1 0 4 9 11 708 1 2 386 0 1 248 1 2 207 0 4 69 34 0 31 149 10 521 24 14 166 0 1 37 0 1 7 1 4 141 0 1 66 chain 12267 chr5 180915260 + 4464253 4464402 HERVL-int 5654 - 1507 1659 150527 23 0 1 44 0 2 82 chain 28871 chr5 180915260 + 4465365 4465785 MLT2A1 477 + 0 399 89580 168 5 2 34 0 1 128 11 2 13 8 1 36 3 0 14 chain 40212 chr5 180915260 + 4470243 4470689 L1PA3long 6157 - 481 928 69015 297 0 1 149 chain 43552 chr5 180915260 + 4470696 4471177 L1PA3long 6157 + 5675 6157 64740 332 0 1 149 chain 325392 chr5 180915260 + 4496459 4500000 L1PA2 6032 - 2 3546 12374 2852 0 1 37 0 2 652 chain 227926 chr5 180915260 + 4500000 4502482 L1HS 6032 - 3546 6029 17424 1029 0 1 1453 chain 23988 chr5 180915260 + 4526737 4527100 THE1B 368 + 0 368 110393 23 0 1 8 1 0 75 0 1 6 1 0 6 0 1 48 1 0 27 1 4 10 0 4 17 1 0 6 8 7 62 1 0 4 1 2 56 chain 6126 chr5 180915260 + 4537849 4537922 LTR1C 686 + 603 676 184219 73 chain 16525 chr5 180915260 + 4594119 4594460 MSTA 426 - 0 384 136844 109 2 22 58 11 10 16 88 112 57 chain 550001 chr5 180915260 + 4615541 4621550 L1PA2 6032 + 2 6032 1446 4 0 1 249 1 0 1457 0 1 192 0 1 1231 0 1 1637 0 18 1072 5 0 7 0 5 154 chain 59149 chr5 180915260 + 4685990 4686663 L1P1 4361 - 20 690 53306 12 2 1 23 1 0 155 1 0 479 chain 39115 chr5 180915260 + 4686665 4687097 L1PA3long 6157 + 5725 6157 70582 432 chain 3800 chr5 180915260 + 4688309 4688354 L1PA8 5853 - 1001 1046 210387 45 chain 68040 chr5 180915260 + 4688360 4689322 L1PA8 5853 + 4895 5853 49231 109 8 5 555 1 0 43 3 1 70 2 1 10 5 6 35 45 43 27 0 4 49 chain 507738 chr5 180915260 + 4709454 4716036 L1PA7 6471 + 6 6459 6347 353 1 0 53 7 2 186 10 11 161 5 0 3 1 0 451 1 0 232 1 9 305 1 2 14 0 1 840 3 4 185 3 0 23 0 28 231 0 4 354 166 1 28 1 0 4 0 1 52 0 1 6 0 4 25 12 10 238 0 2 19 1 2 31 27 25 87 20 20 384 0 1 15 1 0 160 1 0 4 0 1 309 0 1 137 0 1 594 1 0 223 0 1 4 1 0 82 0 1 204 0 1 190 1 2 130 chain 7282 chr5 180915260 + 4712922 4713036 L1PA7 6471 - 1391 1506 175569 39 20 21 55 chain 122558 chr5 180915260 + 4750021 4751611 THE1A-int 1579 - 0 1579 30205 336 13 13 319 1 0 252 0 1 122 1 0 39 42 28 27 2 5 256 0 1 180 chain 115464 chr5 180915260 + 4763427 4764733 L1PA4 6152 + 3096 6152 32622 413 0 2 125 0 1745 401 0 3 367 chain 96295 chr5 180915260 + 4771301 4772406 L1PA3long 6157 + 5077 6157 37732 47 31 7 253 1 0 773 chain 28642 chr5 180915260 + 4775130 4775433 AluYa5 310 - 7 310 90552 303 chain 42593 chr5 180915260 + 4786941 4787458 L1PA5 6144 + 5627 6144 65909 354 16 9 9 0 7 138 chain 24146 chr5 180915260 + 4792800 4793087 AluY 311 + 20 302 109490 265 5 0 17 chain 12000 chr5 180915260 + 4800301 4800432 L1PA5 6144 + 6009 6140 152196 131 chain 17001 chr5 180915260 + 4801392 4801751 THE1B 368 + 0 368 135594 63 25 28 14 16 18 54 40 37 10 11 19 59 11 10 56 chain 23882 chr5 180915260 + 4805991 4806272 L1PA7 6471 + 6183 6464 111012 281 chain 68214 chr5 180915260 + 4811491 4812470 L1PA8 5853 - 3 971 49154 22 40 38 21 10 9 19 2 1 48 1 0 13 2 1 70 2 0 46 7 6 40 6 7 500 2 0 3 1 0 124 chain 47329 chr5 180915260 + 4812490 4813075 L1P3 4156 + 3526 4116 60948 5 0 1 13 3 7 68 0 1 205 0 1 280 2 0 9 chain 115151 chr5 180915260 + 4837473 4838926 LTR12C 1709 + 0 1709 32734 168 0 3 92 0 2 218 6 7 14 0 1 4 1 3 207 0 118 100 0 1 174 1 0 5 3 1 106 11 4 184 1 8 56 0 131 102 chain 509430 chr5 180915260 + 4887708 4893807 L1PA6 6164 - 13 6164 6210 835 0 4 12 0 4 485 3 1 7 0 2 313 0 1 18 2 5 351 2 0 234 0 1 688 0 1 742 3 0 113 0 1 236 4 13 448 0 1 129 0 4 56 3 0 622 0 17 120 3 4 495 0 11 53 2 4 120 chain 32091 chr5 180915260 + 4895109 4895641 MLT2A1 477 - 0 476 80712 39 134 53 202 0 25 157 chain 23018 chr5 180915260 + 4920239 4920518 AluYc 301 + 15 296 115540 105 0 2 174 chain 75872 chr5 180915260 + 4925040 4926009 LTR5_Hs 974 + 0 974 45563 169 1 0 115 1 2 181 0 1 188 1 0 163 8 15 19 20 18 103 chain 44061 chr5 180915260 + 4955200 4955749 MLT2A2 560 - 0 560 64147 147 3 14 399 chain 49938 chr5 180915260 + 4979476 4980361 L1PA15 4387 - 60 925 59063 14 5 4 33 12 9 50 1 0 8 5 1 22 3 2 54 2 1 25 90 91 18 0 1 62 14 13 26 11 9 57 1 0 4 3 0 10 2 0 230 2 0 121 chain 26780 chr5 180915260 + 4999821 5000148 L1PA8A 6298 - 7 335 97049 105 0 1 222 chain 37340 chr5 180915260 + 5000148 5000647 THE1B-int 1605 - 1076 1604 73037 63 10 34 146 4 6 94 0 3 182 chain 14708 chr5 180915260 + 5000648 5000982 THE1B 368 - 0 346 142250 118 63 73 42 72 74 39 chain 75856 chr5 180915260 + 5000985 5001913 L1PA7 6471 - 114 1055 45567 72 14 26 139 0 1 421 14 15 59 1 0 208 chain 21181 chr5 180915260 + 5001914 5002162 L1PA7 6471 + 5156 5404 123270 248 chain 13685 chr5 180915260 + 5013017 5013257 MER30 238 - 6 238 145646 37 3 0 67 6 0 7 10 33 42 22 0 46 chain 368237 chr5 180915260 + 5026323 5031257 L1PA8A 6298 + 173 6282 11149 16 2 0 15 2 0 4 1 0 7 36 30 13 5 0 8 2 0 42 1 0 23 9 1 75 2 0 17 1 0 8 7 5 78 1 0 28 7 8 126 0 1 99 8 9 22 4 0 172 13 36 109 19 11 130 0 3 768 6 1195 28 3 4 134 2 0 7 12 9 139 3 4 128 15 13 169 8 9 93 2 1 661 0 1 44 4 9 140 8 6 162 9 9 76 1 0 5 0 1 200 2 1 172 0 1 31 0 2 88 0 1 97 0 1 498 1 0 106 chain 16562 chr5 180915260 + 5061492 5061685 L1PA6 6164 - 2 195 136764 193 chain 29735 chr5 180915260 + 5076390 5076791 LTR7 482 - 7 482 85709 87 0 2 91 1 32 35 1 4 109 8 46 69 chain 25758 chr5 180915260 + 5083257 5083621 THE1C 375 + 8 375 101048 51 4 10 38 7 3 73 1 2 60 3 4 101 1 0 25 chain 34853 chr5 180915260 + 5087741 5088203 LTR2 463 + 0 463 76403 55 0 3 309 1 0 12 6 7 25 1 0 28 1 0 24 chain 43720 chr5 180915260 + 5090491 5091039 MLT2A2 560 - 0 560 64543 53 0 1 5 1 0 10 0 1 73 0 11 406 chain 68594 chr5 180915260 + 5091039 5091930 HERVL-int 5654 - 0 897 48990 187 0 1 33 5 0 24 0 2 176 4 5 397 1 2 53 1 7 10 chain 6253 chr5 180915260 + 5097533 5097615 MER2 342 + 135 218 183143 71 0 1 11 chain 168159 chr5 180915260 + 5113689 5115930 L1P2 5180 - 2938 5178 22266 526 1 0 12 0 1 604 11 15 286 0 15 220 1 0 48 1 0 68 19 0 196 22 23 24 12 13 25 0 5 8 11 5 146 chain 114740 chr5 180915260 + 5137716 5139427 LTR12C 1709 + 0 1709 32865 604 0 1 10 1 0 177 9 325 5 2 0 102 0 4 134 319 0 275 2 1 71 chain 29521 chr5 180915260 + 5138772 5139079 AluYa5 310 - 3 310 86565 307 chain 109399 chr5 180915260 + 5142864 5144248 L1PA7 6471 + 5011 6469 34345 23 13 7 236 0 1 56 0 6 7 0 1 4 0 69 18 0 1 181 1 0 518 1 0 162 16 17 24 0 3 124 chain 3339 chr5 180915260 + 5163431 5163471 THE1C 375 + 5 46 218250 33 0 1 7 chain 21342 chr5 180915260 + 5170531 5170780 AluSp 311 - 52 301 122714 249 chain 72912 chr5 180915260 + 5215478 5217607 L1PB1 5432 - 12 1093 47062 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 9 0 11 0 3 16 1 0 43 2 1 18 1 0 49 32 27 5 1 0 22 211 0 11 1 2 262 20 18 52 0 1 127 0 14 217 834 6 67 chain 42593 chr5 180915260 + 5216722 5217181 L1PA2 6032 - 4 463 65908 459 chain 18764 chr5 180915260 + 5225432 5225726 AluSc 308 + 0 291 130788 42 23 20 145 0 1 49 21 20 14 chain 28764 chr5 180915260 + 5228795 5229129 LTR10C 591 + 12 345 90048 22 2 0 61 0 1 249 chain 29341 chr5 180915260 + 5229129 5229440 AluYb8 318 + 0 311 87336 311 chain 21831 chr5 180915260 + 5315139 5315477 THE1C 375 - 49 375 120895 131 8 9 96 43 30 60 chain 144226 chr5 180915260 + 5321715 5323774 L1PA11 4918 - 340 2396 25437 11 3 1 12 1 0 15 68 54 13 2 0 66 24 20 49 12 6 17 0 6 68 0 1 102 0 29 201 0 1 111 1 7 67 0 3 4 1 0 49 1 0 48 26 0 76 1 8 156 1 4 83 0 1 134 0 1 229 1 0 23 0 1 52 1 0 134 3 0 193 chain 8013 chr5 180915260 + 5330261 5330362 MER30 238 - 0 98 170974 48 3 0 50 chain 40943 chr5 180915260 + 5393397 5393952 MLT2A2 560 - 0 560 67986 69 0 1 65 8 19 16 0 1 93 11 0 98 1 4 194 chain 143198 chr5 180915260 + 5412696 5414508 L1PA8 5853 + 4027 5853 25615 307 3 0 140 0 1 54 1 0 61 0 16 13 0 7 298 0 1 89 0 1 270 12 10 182 0 1 86 1 0 44 2 0 71 3 2 59 2 1 19 1 0 20 1 0 73 chain 21655 chr5 180915260 + 5438112 5438473 THE1C 375 - 12 375 121557 87 0 1 48 0 3 104 1 0 6 67 67 20 1 0 27 chain 230235 chr5 180915260 + 5477275 5480182 L1PA8 5853 + 2864 5827 17294 24 1 0 46 0 4 282 0 1 170 0 4 88 0 1 182 0 3 21 0 5 175 0 11 25 0 4 277 6 15 168 0 3 44 12 15 104 1 3 17 4 0 449 1 4 73 0 2 19 1 0 187 0 1 42 9 7 149 1 0 31 0 4 6 0 1 33 1 0 44 2 0 53 0 4 13 2 1 13 2 1 39 6 12 16 1 0 67 chain 39450 chr5 180915260 + 5515635 5516085 LTR7 482 + 0 482 70091 197 0 1 32 0 31 221 chain 291490 chr5 180915260 + 5516087 5519691 HERVH-int 3825 + 0 3825 13933 533 12 7 30 1 0 9 62 0 22 4 55 43 21 0 80 0 1 5 2 0 49 3 0 9 0 3 48 0 1 470 0 1 75 0 1 17 0 2 222 8 33 299 0 10 17 0 1 17 1 2 187 0 1 820 10 12 38 0 210 262 3 8 225 chain 3512 chr5 180915260 + 5516672 5516714 HERVH-int 3825 + 460 500 189856 29 2 0 11 chain 39746 chr5 180915260 + 5520825 5521277 LTR7 482 + 0 482 69692 254 1 0 12 0 31 185 chain 3503 chr5 180915260 + 5540248 5540343 HAL1-2a_MD 234 - 12 135 215324 14 4 43 19 14 0 9 9 12 26 chain 15567 chr5 180915260 + 5550983 5551175 THE1D-int 1627 - 491 683 139678 192 chain 22610 chr5 180915260 + 5554354 5554747 THE1B 368 - 12 368 117542 49 66 30 104 2 1 79 16 13 35 0 5 25 2 0 15 chain 9287 chr5 180915260 + 5561052 5561203 L1PB1 5432 - 129 274 164127 7 3 0 16 1 0 43 1 0 18 2 1 6 1 0 18 1 4 23 2 0 9 chain 27757 chr5 180915260 + 5580351 5580721 THE1B 368 + 0 368 93843 119 6 7 43 1 0 28 2 0 171 chain 22746 chr5 180915260 + 5590478 5590847 THE1B 368 - 0 368 116842 65 1 0 60 7 15 14 41 30 6 0 2 59 8 9 108 chain 6237 chr5 180915260 + 5624464 5624597 MSTB 430 + 58 189 183268 59 43 41 31 chain 5674 chr5 180915260 + 5642953 5643025 MER4A1 472 + 0 72 188356 72 chain 5939 chr5 180915260 + 5652309 5652390 L1MB5 1630 - 209 285 185788 8 4 0 22 1 0 46 chain 2513 chr5 180915260 + 5683255 5683713 MLT1H2 457 + 58 422 232979 26 106 97 15 290 205 21 chain 5609 chr5 180915260 + 5692885 5692950 MER51B 395 + 330 395 188997 65 chain 244459 chr5 180915260 + 5695724 5699479 MER61-int 3695 + 1 3694 16534 27 29 14 4 1 0 69 0 5 78 40 0 72 7 6 50 5 1 5 3 0 62 31 18 60 0 1 51 0 1 17 41 45 19 3 5 8 2 0 5 0 2 228 8 6 50 1 2 9 9 8 53 0 1 140 1 6 33 0 4 195 0 1 203 26 27 154 1 0 39 6 5 345 22 0 48 0 3 44 1 2 9 1 0 179 1 2 107 0 1 84 2 1 53 0 1 98 0 4 5 1 2 41 18 44 75 6 5 61 14 23 124 8 6 19 3 5 7 2 0 143 49 32 79 8 3 23 10 12 26 0 1 91 1 0 23 0 40 9 46 0 24 chain 27019 chr5 180915260 + 5746661 5746952 AluYa5 310 - 19 310 96220 291 chain 32046 chr5 180915260 + 5753239 5753752 MER4B 649 - 77 649 80786 147 1 0 1 6 0 15 0 4 6 18 14 29 9 24 117 0 23 22 25 54 6 1 0 110 chain 14626 chr5 180915260 + 5783911 5784103 L1PA5 6144 + 5943 6135 142502 28 1 2 59 1 0 103 chain 28803 chr5 180915260 + 5810023 5810425 MLT2A1 477 + 0 401 89888 13 1 0 155 5 2 9 0 1 25 1 2 17 0 1 16 4 5 139 1 0 16 chain 14601 chr5 180915260 + 5812507 5812702 MER57A1 433 - 235 433 142586 15 7 9 73 0 1 100 chain 19501 chr5 180915260 + 5870027 5870244 L1PA5 6144 + 5926 6143 128652 217 chain 26226 chr5 180915260 + 5901938 5902311 THE1C 375 + 0 375 99109 183 17 15 126 0 1 19 10 13 18 chain 6926 chr5 180915260 + 5932999 5933081 MER51A 677 + 262 344 177994 82 chain 8757 chr5 180915260 + 6011130 6011237 MSTB 430 + 10 117 166878 107 chain 120392 chr5 180915260 + 6011623 6013192 THE1B-int 1605 - 5 1605 30907 65 2 3 133 0 1 237 1 2 283 1 2 230 6 7 181 1 26 86 0 4 129 19 16 195 chain 20930 chr5 180915260 + 6053727 6054030 MSTA-int 1630 + 1309 1619 124176 195 1 8 41 13 12 14 1 2 38 chain 15865 chr5 180915260 + 6062752 6063102 THE1B 368 + 0 356 138757 102 133 141 63 7 6 40 1 0 4 chain 35790 chr5 180915260 + 6072473 6072938 L1PA7 6471 - 1 461 75148 4 1 0 7 5 0 150 0 1 27 13 12 47 0 1 211 chain 18950 chr5 180915260 + 6072953 6073175 L1PA7 6471 + 5773 5997 130227 32 0 2 190 chain 13314 chr5 180915260 + 6086401 6086587 MER30 238 - 5 204 147036 43 3 0 57 10 26 73 chain 17267 chr5 180915260 + 6095284 6095479 L1PA4 6152 - 0 198 134874 13 0 3 182 chain 26470 chr5 180915260 + 6095479 6096905 L1PA4 6152 + 5779 6143 98164 163 1118 56 145 chain 20224 chr5 180915260 + 6122981 6123334 THE1B 368 - 0 368 126454 48 16 14 12 0 1 7 7 6 9 1 0 4 0 1 78 17 16 90 20 38 44 chain 24895 chr5 180915260 + 6124912 6125254 THE1B 368 - 11 368 105380 38 8 9 7 2 0 9 0 1 120 2 1 77 0 1 35 0 15 44 chain 48475 chr5 180915260 + 6137396 6138155 L1PB1 5432 - 9 749 60132 4 1 0 15 1 0 13 1 0 21 1 0 7 1 0 17 2 0 14 1 0 5 2 0 30 13 0 11 10 9 37 22 20 52 2 0 9 5 1 12 1 0 8 1 0 23 0 14 55 1 0 6 2 3 329 9 10 15 chain 239768 chr5 180915260 + 6150619 6153601 HERVL-int 5654 - 350 3608 16788 74 38 7 231 2 4 216 0 3 694 0 1 13 0 1 334 0 2 102 2 4 116 5 272 320 0 19 288 0 10 118 2 3 212 1 0 214 chain 5292 chr5 180915260 + 6154482 6154559 MADE1 96 - 0 93 192096 33 5 21 39 chain 21220 chr5 180915260 + 6168631 6168896 L1PA5 6144 + 5877 6143 123143 8 0 1 95 6 1 10 1 6 145 chain 33353 chr5 180915260 + 6173787 6174174 L1PA4 6152 - 9 390 78645 104 0 1 42 7 0 234 chain 29368 chr5 180915260 + 6200634 6201005 THE1B 368 + 0 368 87213 176 1 0 143 5 3 46 chain 21916 chr5 180915260 + 6263851 6264222 THE1C 375 + 0 375 120560 86 41 12 9 0 32 42 4 5 41 9 10 113 8 7 18 chain 23061 chr5 180915260 + 6271774 6272098 THE1A 353 + 0 325 115348 71 1 0 4 11 15 20 1 0 92 1 0 97 1 0 4 0 1 21 chain 18664 chr5 180915260 + 6284697 6284908 L1PA6 6164 - 220 431 131043 211 chain 19272 chr5 180915260 + 6324938 6325232 AluSz 310 + 8 298 129310 34 0 1 100 10 9 70 27 23 53 chain 8777 chr5 180915260 + 6342288 6342417 MER85 139 - 0 139 166782 9 2 0 20 2 14 96 chain 5678 chr5 180915260 + 6357972 6358037 L1PA8 5853 - 0 65 188320 65 chain 15136 chr5 180915260 + 6358037 6358213 L1PA8A 6298 + 5876 6053 140957 41 0 1 135 chain 75243 chr5 180915260 + 6363755 6364575 L1PA2 6032 + 5195 6016 45901 679 0 1 141 chain 28640 chr5 180915260 + 6388710 6389022 AluYa5 310 + 0 308 90560 97 2 0 26 2 0 185 chain 7304 chr5 180915260 + 6403509 6403601 MLT1A1 405 - 12 104 175418 92 chain 18812 chr5 180915260 + 6417978 6418243 MER1B 344 + 73 342 130643 189 2 0 5 14 20 55 chain 12725 chr5 180915260 + 6429451 6429706 L1MA5A 2387 - 91 316 149352 33 5 1 32 37 15 35 1 0 23 0 1 4 3 0 38 9 8 35 chain 51708 chr5 180915260 + 6442132 6442999 L1PREC2 3366 - 303 1142 57813 4 1 0 11 2 0 24 28 26 27 37 20 29 2 0 8 84 78 30 1 0 54 2 0 173 0 4 59 0 1 161 1 0 13 0 1 116 chain 13694 chr5 180915260 + 6503867 6504144 L1PB1 5432 - 10 263 145621 17 3 2 9 2 1 23 1 0 24 2 0 14 1 0 5 3 1 18 20 8 4 1 0 16 4 3 41 1 0 17 1 0 50 chain 23308 chr5 180915260 + 6517823 6518177 THE1B 368 - 12 368 114162 63 1 0 63 50 39 19 1 0 117 0 15 40 chain 4839 chr5 180915260 + 6523825 6523971 L1MB3 1562 - 213 361 196890 45 75 77 26 chain 28435 chr5 180915260 + 6524386 6524698 AluYb8 318 + 5 317 91443 312 chain 15268 chr5 180915260 + 6527422 6527600 L1PA4 6152 + 5967 6143 140579 124 2 0 52 chain 3821 chr5 180915260 + 6560134 6560178 L1MB1 2102 + 251 295 210069 44 chain 34079 chr5 180915260 + 6569721 6570377 MLT2A1 477 + 2 477 77498 13 0 2 151 5 2 215 20 0 14 185 26 6 1 0 46 chain 19796 chr5 180915260 + 6579399 6579761 THE1B 368 - 0 366 127827 125 72 74 31 29 31 105 chain 46534 chr5 180915260 + 6645968 6646526 L1PA7 6471 - 10 568 61565 558 chain 245261 chr5 180915260 + 6646526 6650002 L1P2 5180 - 1663 5177 16498 129 1 0 205 1 0 114 1 2 663 1 6 24 0 1 51 0 3 450 16 6 402 0 4 12 2 15 50 0 1 77 13 12 241 1 0 4 0 1 56 19 58 29 0 4 95 0 15 50 22 1 53 1 0 26 10 14 78 43 69 34 4 5 11 19 0 37 191 169 45 2 1 45 1 0 116 1 0 30 chain 26262 chr5 180915260 + 6650754 6651044 L1PA2 6032 - 0 289 98967 158 1 0 131 chain 50912 chr5 180915260 + 6670961 6671656 L1PB1 5432 - 289 990 58360 5 1 0 24 3 0 13 0 12 36 16 16 40 4 3 77 0 2 111 1 0 100 1 2 81 3 0 179 chain 12680 chr5 180915260 + 6671656 6671927 L1PB1 5432 + 5169 5418 149531 50 3 2 10 7 6 43 1 0 16 3 0 9 9 1 16 32 27 21 1 0 21 1 0 13 1 0 14 chain 3020 chr5 180915260 + 6761435 6761467 MER53 195 + 156 188 224615 32 chain 4839 chr5 180915260 + 6788854 6788964 MER20 218 + 57 170 196894 28 32 38 38 3 0 9 chain 48190 chr5 180915260 + 6817772 6818350 L1PA5 6144 - 2 582 60330 27 10 14 321 3 1 217 chain 21445 chr5 180915260 + 6848336 6848575 7SK 245 - 6 245 122348 239 chain 26467 chr5 180915260 + 6853377 6854047 THE1B 368 + 0 368 98177 44 0 15 95 320 0 21 1 0 15 5 9 169 chain 15567 chr5 180915260 + 6880218 6880415 THE1B 368 - 0 193 139677 96 3 0 5 0 1 74 2 0 17 chain 8652 chr5 180915260 + 6882762 6882873 MSTA 426 - 21 132 167462 111 chain 9359 chr5 180915260 + 6889453 6889697 MER74A 558 - 304 558 163758 39 118 127 56 0 1 31 chain 7410 chr5 180915260 + 6891734 6891868 MER61A 341 + 105 239 174714 35 1 0 23 28 29 47 chain 14768 chr5 180915260 + 6897363 6897761 L1PREC2 3366 + 2691 3048 142038 54 1 2 5 2 0 27 16 7 20 1 0 44 1 0 3 3 0 14 51 38 16 6 4 26 33 24 20 21 19 34 chain 136896 chr5 180915260 + 6916954 6919077 L1PB1 5432 + 3366 5423 26663 324 1 0 15 0 1 4 1 0 6 41 22 214 21 5 279 4 0 177 51 50 166 10 1 45 7 19 102 0 1 7 0 2 6 5 4 287 1 2 9 3 0 24 1 0 6 1 0 12 18 12 44 5 7 19 1 0 46 1 0 12 1 0 4 19 9 16 2 0 7 1 0 12 0 2 24 1 0 13 7 3 5 1 0 13 1 0 10 1 0 9 chain 146889 chr5 180915260 + 6921450 6923414 L1PA8 5853 - 0 1964 25035 9 1 0 83 2 1 16 1 0 37 32 32 66 2 0 47 1 0 83 11 9 382 13 14 62 7 6 45 10 11 111 0 2 70 9 10 22 0 1 198 5 4 198 2 0 402 0 5 16 0 1 21 chain 13376 chr5 180915260 + 6931167 6932207 L1PREC2 3366 - 1611 2393 146798 59 826 576 57 20 12 78 chain 14075 chr5 180915260 + 6944752 6944910 L1PA5 6144 - 7 165 144307 158 chain 24444 chr5 180915260 + 6948352 6948633 L1PA7 6471 - 18 300 107835 92 0 1 189 chain 457823 chr5 180915260 + 6952630 6958395 L1PA8 5853 + 108 5853 8475 197 15 3 280 0 1 19 0 7 45 14 8 247 7 4 226 1 0 737 0 1 142 4 1 231 10 0 612 1 2 582 0 1 312 1 2 12 13 18 856 0 1 332 1 0 20 0 2 88 1 4 200 1 0 93 0 2 126 1 0 38 6 5 43 2 0 69 30 28 35 2 1 19 1 0 93 chain 495922 chr5 180915260 + 6966391 6971788 L1PA2 6032 + 3 6032 7076 1034 0 633 5 0 1 4093 3 1 104 0 7 9 7 0 142 chain 176284 chr5 180915260 + 6996514 6999876 L1PB1 5432 - 12 2527 21332 16 1 0 7 1 17 10 1 0 20 63 48 6 3 0 13 1 9 37 1 0 16 2 1 50 3 1 10 63 57 49 2 3 52 8 5 178 0 8 3 9 0 107 0 1 5 4 0 20 3 0 39 8 5 457 8 12 86 0 1 4 15 16 226 0 1 92 1 4 114 0 2 63 4 5 83 861 15 292 0 4 245 chain 61619 chr5 180915260 + 6998496 6999320 LTR12 884 + 0 869 52070 355 0 58 229 6 8 149 39 24 46 chain 179849 chr5 180915260 + 7019826 7022616 HUERS-P2-int 2744 - 2 2742 21006 27 2 0 12 2 0 5 4 13 27 3 0 36 7 6 15 4 2 10 1 0 7 2 1 39 15 13 16 3 1 72 10 9 662 1 11 372 0 1 140 108 108 96 4 3 180 0 1 184 2 1 78 5 7 89 10 11 24 1 0 14 22 21 100 1 0 7 92 59 72 57 49 50 1 0 6 2 0 31 1 0 23 4 0 16 4 1 12 chain 37195 chr5 180915260 + 7035055 7035546 L1PA8 5853 - 6 490 73240 87 1 0 19 7 6 56 2 1 70 2 0 44 1 0 38 6 5 158 chain 37211 chr5 180915260 + 7042599 7043060 LTR2 463 - 0 463 73224 88 12 13 11 0 1 350 chain 51470 chr5 180915260 + 7056358 7056921 L1PA2 6032 - 759 1322 57994 563 chain 71889 chr5 180915260 + 7056921 7057690 L1PA2 6032 + 5263 6032 47524 769 chain 265175 chr5 180915260 + 7059742 7063445 HERVH-int 3825 - 0 3825 15432 84 0 1 724 1 0 41 165 0 557 5 4 5 0 1 313 35 40 209 61 96 35 8 32 4 1 0 252 9 0 180 43 13 47 0 1 4 1 0 402 0 265 25 3 0 5 5 3 7 0 3 10 11 12 4 0 1 25 11 10 77 1 0 333 chain 23228 chr5 180915260 + 7068800 7069222 MER51B 395 - 0 395 114557 221 71 1 26 1 57 48 29 16 26 chain 63793 chr5 180915260 + 7084079 7084799 L1PA4 6152 - 18 752 51102 85 0 12 261 0 2 374 chain 50707 chr5 180915260 + 7084799 7085369 L1PA4 6152 + 4832 5402 58275 570 chain 37111 chr5 180915260 + 7106980 7107397 L1PA4 6152 - 451 869 73361 374 0 1 43 chain 37917 chr5 180915260 + 7107397 7107831 L1PA4 6152 + 5717 6152 72255 101 2 0 318 0 3 13 chain 27753 chr5 180915260 + 7112084 7112387 AluYa5 310 - 10 310 93856 168 3 0 132 chain 536984 chr5 180915260 + 7125395 7131411 L1PA3long 6157 - 0 6157 3312 5 2 0 9 0 3 830 0 3 1792 2 1 1081 0 3 320 0 3 294 6 8 556 0 1 344 0 128 622 0 1 153 chain 24376 chr5 180915260 + 7137698 7138052 THE1B 368 - 0 368 108216 75 1 0 99 28 28 98 9 24 44 chain 34607 chr5 180915260 + 7141321 7141691 L1PA2 6032 - 0 370 76747 370 chain 15437 chr5 180915260 + 7143066 7143252 L1PA7 6471 + 6284 6470 140085 186 chain 22519 chr5 180915260 + 7144943 7145193 L1PA4 6152 - 9 259 117943 250 chain 8072 chr5 180915260 + 7146276 7146376 MER11A 1151 - 14 117 170641 22 0 4 26 1 0 51 chain 6705 chr5 180915260 + 7151782 7151880 HSMAR2 1300 - 0 99 179649 28 3 4 67 chain 290605 chr5 180915260 + 7159712 7163358 L1P3 4156 - 453 4156 13984 150 3 7 92 0 5 791 0 1 23 1 2 11 0 1 402 0 2 156 1 6 292 3 9 324 0 1 217 0 4 14 1 11 80 4 0 6 1 5 192 21 22 476 0 1 80 1 0 58 15 15 94 10 26 127 chain 557898 chr5 180915260 + 7170662 7176819 L1PA3long 6157 + 0 6157 512 355 1 0 273 4 0 690 0 1 2196 1 0 1701 1 2 92 0 4 843 chain 29354 chr5 180915260 + 7187542 7188090 L1PA11 4918 - 290 800 87276 17 47 33 11 2 0 13 4 3 10 16 11 10 41 34 11 2 0 68 2 0 13 8 7 55 4 0 214 chain 555672 chr5 180915260 + 7193882 7199908 L1PA2 6032 + 0 6029 752 1040 0 1 965 0 1 3171 0 1 850 chain 29568 chr5 180915260 + 7221938 7222248 AluYb8 318 - 8 318 86340 310 chain 553359 chr5 180915260 + 7230713 7236846 L1PA3long 6157 + 7 6155 1025 1240 0 2 830 0 3 2280 0 4 678 0 3 38 0 1 106 1 0 884 0 3 76 chain 13817 chr5 180915260 + 7240611 7240803 L1MA4 2864 - 171 365 145190 18 3 0 31 0 1 100 0 3 22 2 3 16 chain 27125 chr5 180915260 + 7262449 7262855 LTR7 482 + 0 482 95845 69 8 46 109 8 40 25 5 6 12 0 1 78 0 2 31 12 14 49 chain 36441 chr5 180915260 + 7263692 7264128 LTR7 482 + 0 469 74311 263 1 32 124 12 14 36 chain 297437 chr5 180915260 + 7264143 7267727 HERVH-int 3825 + 0 3816 13557 212 0 11 309 5 0 38 1 0 10 1 0 8 44 16 15 1 0 12 3 41 26 2 1 21 21 0 9 2 1 49 1 0 586 0 1 319 4 31 419 0 1 127 0 1 438 1 0 390 0 3 25 8 218 116 0 1 361 chain 37853 chr5 180915260 + 7268996 7269444 LTR7 482 + 0 482 72340 225 0 1 37 1 32 124 12 14 49 chain 2768 chr5 180915260 + 7293392 7293424 MER58B 340 - 17 49 229217 32 chain 14016 chr5 180915260 + 7302551 7302717 AluSp 311 - 0 166 144523 166 chain 6587 chr5 180915260 + 7358916 7359052 MER2B 336 + 197 336 180564 74 44 47 18 chain 19400 chr5 180915260 + 7365761 7365990 AluY 311 + 8 234 128947 123 3 0 103 chain 6569 chr5 180915260 + 7449242 7449337 L1PA11 4918 - 401 489 180707 9 4 0 20 1 0 16 2 0 43 chain 3717 chr5 180915260 + 7453513 7453561 Tigger1 2417 + 2067 2115 211683 48 chain 10718 chr5 180915260 + 7481909 7482055 L1MA3 4352 - 1098 1247 157331 42 2 0 46 1 6 55 chain 3589 chr5 180915260 + 7500243 7500284 L1MC3 1789 - 612 653 213832 41 chain 16300 chr5 180915260 + 7536817 7537011 L1PA7 6471 + 6184 6384 137482 19 0 6 175 chain 3861 chr5 180915260 + 7556085 7556133 MER3 215 - 10 58 209437 48 chain 51142 chr5 180915260 + 7559127 7559886 L1PA13 3608 - 86 824 58225 4 1 0 16 6 1 10 6 3 20 1 0 20 9 5 47 2 0 9 8 7 45 1 0 62 2 0 109 5 4 28 1 0 234 0 1 113 chain 9733 chr5 180915260 + 7573731 7573848 LTR30 714 - 85 202 161926 117 chain 59400 chr5 180915260 + 7573872 7574517 L1PA2 6032 - 0 645 53177 645 chain 216781 chr5 180915260 + 7603928 7606244 L1HS 6032 - 0 2323 18070 1951 0 7 365 chain 10933 chr5 180915260 + 7613156 7613281 L1PA5 6144 + 6019 6144 156471 125 chain 33459 chr5 180915260 + 7651355 7651864 MLT2A2 560 - 0 559 78478 122 44 41 51 4 36 9 0 14 35 6 13 8 0 1 50 1 0 179 chain 55860 chr5 180915260 + 7664580 7665335 MER4E 760 + 0 760 55208 17 1 2 119 0 5 7 23 26 65 0 1 23 0 8 8 0 1 200 1 0 50 13 0 228 chain 26075 chr5 180915260 + 7674986 7675300 AluYk4 311 + 0 306 99728 213 4 1 81 5 0 11 chain 18993 chr5 180915260 + 7691854 7692224 MSTA 426 - 7 426 130128 103 0 20 57 47 45 15 7 11 20 45 72 76 chain 54882 chr5 180915260 + 7698510 7699173 L1PA7 6471 - 8 672 55783 10 2 0 130 0 7 6 4 0 511 chain 29663 chr5 180915260 + 7699199 7699509 AluYa5 310 - 0 310 86000 310 chain 141176 chr5 180915260 + 7702346 7703942 L1PA5 6144 - 0 1604 25957 11 2 5 322 0 1 511 1 0 147 0 5 602 chain 125944 chr5 180915260 + 7720513 7721951 L1PA5 6144 - 4 1443 29120 12 3 0 124 0 1 994 0 1 182 0 1 52 0 1 71 chain 4524 chr5 180915260 + 7729731 7729791 MER41B 635 - 93 154 200507 14 0 1 46 chain 20417 chr5 180915260 + 7744219 7744500 L1PA8 5853 + 5578 5853 125847 30 8 6 64 2 1 11 1 0 54 1 0 16 1 0 93 chain 22648 chr5 180915260 + 7848734 7849106 THE1C 375 + 0 375 117335 81 4 5 89 64 67 108 1 0 25 chain 24418 chr5 180915260 + 7891875 7892172 AluY 311 + 2 302 107975 130 0 1 133 9 11 25 chain 6744 chr5 180915260 + 7907127 7907363 L1MA4 2864 - 55 247 179362 39 17 15 15 105 65 38 2 0 20 chain 24627 chr5 180915260 + 7911379 7911745 THE1B 368 - 0 368 106847 50 7 0 75 35 45 30 1 0 168 chain 117740 chr5 180915260 + 7911751 7913299 THE1B-int 1605 - 6 1605 31880 86 5 10 110 15 16 224 8 12 445 2 1 96 0 8 92 1 0 35 7 32 80 0 1 39 1 0 202 0 3 26 0 7 74 chain 12573 chr5 180915260 + 7933092 7933240 L1PA5 6144 - 3 147 149948 6 4 0 138 chain 20999 chr5 180915260 + 7937550 7937791 AluY 311 + 65 306 123924 241 chain 11221 chr5 180915260 + 7937804 7937973 MSTA 426 + 249 426 155343 44 21 29 104 chain 31283 chr5 180915260 + 7961418 7961889 MER41A 554 - 123 554 82016 105 43 0 233 5 6 37 6 8 42 chain 94478 chr5 180915260 + 7964213 7965465 HSMAR1 1287 - 3 1279 38213 125 0 2 96 5 0 36 0 4 312 0 13 109 0 2 14 0 3 6 3 0 176 10 18 220 2 0 14 2 4 122 chain 190352 chr5 180915260 + 7972862 7975030 L1PA5 6144 - 2 2170 20011 1022 0 1 497 1 0 648 chain 36190 chr5 180915260 + 8037612 8038116 MER9a2 513 - 0 473 74643 194 9 0 4 23 0 81 10 11 183 chain 26955 chr5 180915260 + 8038128 8038470 THE1B-int 1605 + 1260 1599 96431 42 7 4 293 chain 35471 chr5 180915260 + 8043484 8043874 L1PA4 6152 - 294 684 75591 390 chain 96189 chr5 180915260 + 8044241 8045456 L1PA8 5853 + 4633 5847 37771 147 0 1 224 1 4 184 9 12 191 1 0 168 1 0 44 2 0 70 2 1 11 1 0 50 2 1 19 1 0 87 chain 42063 chr5 180915260 + 8046297 8046904 THE1B-int 1605 + 0 635 66542 33 8 9 142 0 3 226 13 38 94 35 34 56 chain 18152 chr5 180915260 + 8071483 8071715 AluY 311 + 88 311 132452 35 13 4 184 chain 6439 chr5 180915260 + 8073524 8073600 L1P4 1494 + 471 547 181713 76 chain 537112 chr5 180915260 + 8084332 8090357 L1PA3long 6157 - 1 6147 3298 408 0 1 1400 0 3 1180 1 0 770 0 3 950 0 1 531 0 128 209 1 0 4 5 11 305 21 1 87 11 12 142 chain 25528 chr5 180915260 + 8095242 8095515 AluYb8 318 - 10 283 102105 273 chain 7733 chr5 180915260 + 8098843 8098929 L1PA4 6152 + 6065 6151 172687 86 chain 8639 chr5 180915260 + 8101664 8101764 L1PA4 6152 - 11 111 167544 100 chain 8565 chr5 180915260 + 8104944 8105037 L1PA5 6144 - 4 97 167930 93 chain 9459 chr5 180915260 + 8124747 8124955 L1MA2 4263 + 3881 4084 163276 23 63 61 93 8 5 21 chain 21029 chr5 180915260 + 8153279 8153518 L1PA4 6152 + 5893 6132 123814 239 chain 496409 chr5 180915260 + 8159176 8164673 L1PA3long 6157 + 0 6152 7046 94 0 526 156 0 128 104 0 1 49 0 1 4765 1 0 328 chain 167866 chr5 180915260 + 8168802 8171307 L1PA7 6471 + 4246 6467 22296 22 0 1 4 1 0 62 2 3 80 0 11 35 1 2 307 36 16 529 8 0 305 9 6 89 338 70 10 0 1 43 2 3 231 1 2 210 10 10 82 2 1 86 chain 8178 chr5 180915260 + 8212003 8212090 L1HS 6032 - 2 89 170075 87 chain 492161 chr5 180915260 + 8220137 8226292 L1PA7 6471 + 311 6466 7260 303 0 1 8 0 1 181 0 1 1291 4 5 130 9 1 645 13 20 270 0 3 108 3 1 94 0 1 262 4 3 28 2 0 341 2 1 816 19 20 109 6 2 664 1 0 18 10 11 59 0 1 174 0 1 581 chain 3840 chr5 180915260 + 8227587 8227631 MLT1B 390 + 338 382 209786 44 chain 4539 chr5 180915260 + 8259668 8259716 L1PA3long 6157 - 744 792 200351 48 chain 65511 chr5 180915260 + 8259716 8260442 L1PA3long 6157 + 5430 6157 50334 530 0 1 196 chain 38280 chr5 180915260 + 8266802 8267257 L1PA7 6471 - 3 459 71740 149 1 2 305 chain 5618 chr5 180915260 + 8267257 8267329 L1P3 4156 - 856 924 188886 58 4 0 10 chain 44582 chr5 180915260 + 8273197 8273680 L1PA2 6032 - 1233 1716 63117 483 chain 112835 chr5 180915260 + 8273680 8274904 L1PA2 6032 + 4810 6032 33426 1217 2 0 5 chain 288156 chr5 180915260 + 8283597 8286950 L1PA6 6164 + 2816 6161 14154 373 0 1 340 1 0 533 0 1 117 0 1 461 6 0 12 0 1 585 0 1 73 1 0 689 15 14 135 4 0 8 chain 51473 chr5 180915260 + 8307605 8308358 LTR17 781 - 27 781 57992 17 35 36 14 1 2 357 2 1 33 0 2 100 37 36 95 1 0 61 chain 23854 chr5 180915260 + 8365187 8365459 AluY 311 + 4 282 111154 128 0 1 11 0 5 133 chain 116625 chr5 180915260 + 8377426 8378702 L1PA3long 6157 + 3887 5163 32256 1276 chain 89675 chr5 180915260 + 8378702 8379687 L1PA3long 6157 + 5164 6150 39754 827 0 1 158 chain 5170 chr5 180915260 + 8416662 8416722 MER4A1 472 + 157 217 193351 60 chain 10284 chr5 180915260 + 8418730 8418853 L1P5 443 + 253 376 159212 123 chain 12607 chr5 180915260 + 8427386 8427543 THE1B 368 - 12 169 149816 157 chain 14245 chr5 180915260 + 8443257 8443507 THE1D 372 - 138 372 143742 40 25 28 91 0 10 10 29 0 55 chain 14232 chr5 180915260 + 8455690 8456045 MSTA 426 + 18 426 143785 8 0 1 63 165 214 19 0 3 100 chain 43134 chr5 180915260 + 8466410 8466998 PRIMA4_LTR 623 - 0 623 65250 66 5 7 136 0 4 18 0 2 73 0 1 53 2 4 61 5 28 27 1 2 141 chain 6937 chr5 180915260 + 8499708 8499820 MER44A 345 + 138 244 177918 30 16 10 66 chain 14849 chr5 180915260 + 8503460 8503853 MSTA 426 - 0 426 141780 30 13 17 40 23 43 16 86 85 45 40 50 100 chain 172049 chr5 180915260 + 8510187 8512435 L1PA8 5853 - 0 2242 21809 44 0 1 48 1 0 19 2 1 50 1 0 11 1 0 17 8 0 9 0 8 37 2 0 44 1 0 552 11 10 195 3 2 5 0 1 832 21 22 124 0 1 166 1 0 43 chain 33404 chr5 180915260 + 8513534 8514004 L1PA8 5853 - 9 477 78558 45 3 0 37 3 2 19 2 1 50 1 2 9 3 2 67 2 0 46 1 0 176 0 6 6 chain 28229 chr5 180915260 + 8534349 8534720 L1PA8 5853 - 5 369 92196 87 5 4 16 2 1 49 1 0 9 1 0 74 2 0 46 1 0 78 chain 30350 chr5 180915260 + 8587058 8587415 L1PA7 6471 - 7 365 83779 327 0 1 30 chain 52514 chr5 180915260 + 8587415 8588044 L1PA7 6471 + 5464 6099 57293 149 4 1 7 0 8 80 0 1 389 chain 11093 chr5 180915260 + 8608568 8608702 L1PA4 6152 + 6015 6152 155827 9 0 3 125 chain 15393 chr5 180915260 + 8613740 8613908 L1PA4 6152 + 5973 6141 140221 168 chain 39878 chr5 180915260 + 8616721 8617176 L1PA5 6144 + 5685 6141 69491 137 0 1 318 chain 242668 chr5 180915260 + 8630070 8632957 L1PA6 6164 + 3258 6162 16631 14 1 6 138 0 12 505 0 1 436 1 5 1464 14 7 305 0 2 9 chain 12303 chr5 180915260 + 8634031 8634322 L1PA17 2846 - 173 452 151003 23 1 0 18 1 0 27 94 88 11 0 5 7 9 0 100 chain 23220 chr5 180915260 + 8645407 8645713 L1PA5 6144 + 5837 6144 114599 57 1 2 74 4 6 156 3 1 11 chain 9129 chr5 180915260 + 8691596 8691712 L1PA6 6164 + 6048 6162 164916 105 2 0 9 chain 157909 chr5 180915260 + 8697596 8699379 L1PA5 6144 + 4349 6132 23606 1535 1 2 105 1 0 141 chain 25568 chr5 180915260 + 8699976 8700295 L1PA7 6471 + 6139 6457 101882 119 7 8 134 2 0 57 chain 72547 chr5 180915260 + 8712589 8713401 L1PA4 6152 - 0 815 47244 6 0 4 180 1 0 625 chain 71537 chr5 180915260 + 8713401 8714204 L1PA4 6152 + 4518 5325 47642 786 0 4 17 chain 538987 chr5 180915260 + 8730968 8737087 L1PA4 6152 + 0 6136 2992 873 0 2 104 1 0 1712 1 0 492 2 0 1166 0 8 709 0 1 125 0 2 107 1 0 350 0 9 476 chain 156114 chr5 180915260 + 8738458 8740383 HERVL-int 5654 - 348 2287 23844 246 0 1 279 0 20 78 7 8 370 0 4 117 17 8 65 7 2 75 0 1 54 2 1 11 0 2 173 0 3 5 3 0 416 chain 29517 chr5 180915260 + 8741051 8741456 MER51B 395 - 0 395 86580 149 1 0 60 1 2 43 1 3 10 0 1 87 13 0 40 chain 22808 chr5 180915260 + 8742903 8743264 THE1B 368 + 0 368 116538 81 49 51 37 1 0 31 2 0 106 6 14 48 chain 64015 chr5 180915260 + 8744736 8745437 L1PA3long 6157 - 1309 2010 50471 701 chain 121024 chr5 180915260 + 8745437 8746774 L1PA3long 6157 + 4822 6157 30685 5 3 0 996 0 1 333 chain 3107 chr5 180915260 + 8756169 8756203 MLT2B1 522 + 482 516 222799 34 chain 47914 chr5 180915260 + 8763624 8764239 L1PA8 5853 - 0 616 60546 79 0 8 6 1 0 16 8 7 44 1 0 11 1 0 65 9 7 48 1 0 325 chain 20688 chr5 180915260 + 8773718 8773942 L1PA4 6152 + 4211 4435 124387 224 chain 109798 chr5 180915260 + 8773942 8775153 L1PA4 6152 + 4925 6134 34258 453 1 0 520 2 1 235 chain 32897 chr5 180915260 + 8782678 8783089 L1PA7 6471 - 3 414 79376 9 2 0 207 0 1 114 0 1 79 chain 7562 chr5 180915260 + 8822438 8822657 THE1D 372 + 144 372 173787 17 97 100 63 9 15 33 chain 28282 chr5 180915260 + 8827508 8827908 MER51B 395 - 8 395 91998 123 14 15 4 1 0 203 13 0 42 chain 6020 chr5 180915260 + 8841398 8841468 LTR12D 1347 + 1128 1198 185054 70 chain 56109 chr5 180915260 + 8856663 8857293 L1PA5 6144 - 0 630 55067 630 chain 17696 chr5 180915260 + 8886528 8886761 L1PA7 6471 + 6227 6466 133711 81 3 11 140 2 0 7 chain 9355 chr5 180915260 + 8892215 8892324 THE1D-int 1627 - 1 111 163779 31 0 1 78 chain 92995 chr5 180915260 + 8931539 8932581 L1PA5 6144 + 4910 5959 38657 182 0 1 546 1 7 313 chain 38266 chr5 180915260 + 8932591 8933101 L1PA10 4194 - 44 562 71756 34 3 0 9 2 1 30 2 0 215 0 14 215 chain 75627 chr5 180915260 + 8937853 8938820 LTR5_Hs 974 + 0 974 45701 130 0 1 158 0 1 177 0 1 188 1 0 163 8 15 17 22 20 103 chain 77022 chr5 180915260 + 8962758 8963686 L1PA7 6471 - 33 969 44955 130 0 1 176 0 1 456 1 3 53 0 4 112 chain 19344 chr5 180915260 + 8978544 8978965 MSTA 426 + 6 426 129093 21 5 6 36 34 35 57 6 7 38 59 63 14 23 13 102 0 2 26 chain 54633 chr5 180915260 + 8990061 8990658 L1PA3long 6157 - 0 597 55948 597 chain 8586 chr5 180915260 + 8995290 8995406 THE1B-int 1605 + 1485 1599 167812 65 4 2 47 chain 81955 chr5 180915260 + 9000138 9002570 HERVH-int 3825 - 0 2435 12945 605 0 1 956 0 1 809 0 1 62 chain 468741 chr5 180915260 + 9002586 9007899 L1PA4 6152 - 0 5304 8080 259 0 1 95 0 1 1627 8 8 1084 22 10 482 0 2 890 0 1 456 1 0 196 1 0 192 chain 49975 chr5 180915260 + 9007899 9009382 HERVH-int 3825 - 2435 3825 12945 161 12 0 7 1 0 5 2 0 90 0 3 36 17 18 116 0 1 174 1 0 49 2 1 5 0 1 6 42 0 46 84 0 15 1 52 24 1 0 9 2 1 38 5 0 532 chain 2270 chr5 180915260 + 9009404 9009451 HERVH-int 3825 - 3107 3153 235770 18 10 9 19 chain 14378 chr5 180915260 + 9009455 9009643 HERVH-int 3825 - 3195 3389 143273 12 2 15 23 1 0 10 1 0 38 5 0 96 chain 25414 chr5 180915260 + 9064447 9064759 L1PA7 6471 + 6002 6313 102618 217 1 0 94 chain 33510 chr5 180915260 + 9079276 9079670 L1P3 4156 + 3057 3451 78245 394 chain 78518 chr5 180915260 + 9079670 9080662 L1PA7 6471 + 5475 6470 44258 57 0 1 64 4 0 24 1 0 442 6 5 228 12 13 6 0 4 129 7 10 12 chain 120836 chr5 180915260 + 9084850 9086389 THE1B-int 1605 + 17 1600 30746 96 7 10 309 0 25 623 0 1 305 5 20 194 chain 20749 chr5 180915260 + 9095242 9095515 L1PA7 6471 + 6194 6466 124790 116 1 0 4 3 0 5 6 9 138 chain 29318 chr5 180915260 + 9109141 9109451 AluYa5 310 - 0 310 87451 310 chain 16258 chr5 180915260 + 9125452 9125721 L1PA8 5853 - 0 262 137584 93 5 4 13 1 0 40 29 26 69 6 4 13 chain 34229 chr5 180915260 + 9138738 9139334 L1PB1 5432 - 12 579 77312 16 1 0 13 0 3 18 1 0 24 2 0 11 62 39 16 1 0 44 1 0 14 5 4 51 2 0 8 12 16 5 1 0 23 3 0 7 4 5 98 4 3 149 chain 56661 chr5 180915260 + 9159562 9160274 L1PA8A 6298 + 5574 6290 54746 80 0 3 84 1 2 440 18 18 89 chain 26859 chr5 180915260 + 9259448 9259736 L1HS 6032 - 3288 3576 96773 288 chain 307638 chr5 180915260 + 9259736 9263020 L1HS 6032 + 2747 6031 13106 3284 chain 501715 chr5 180915260 + 9271724 9278079 L1PA7 6471 + 34 6468 6742 175 0 3 24 8 18 360 25 21 69 3 0 34 5 15 104 35 39 6 4 0 17 0 1 319 0 2 100 4 5 51 0 3 162 10 31 141 1 2 26 1 0 287 1 0 83 0 1 535 1 0 41 0 4 134 1 4 35 0 4 740 4 4 354 0 1 20 3 0 131 0 1 116 3 4 48 0 1 56 0 21 334 0 2 313 10 6 36 0 4 34 3 1 497 2 0 96 1 0 586 0 7 5 1 0 160 chain 32596 chr5 180915260 + 9311488 9311865 L1PA3long 6157 + 5779 6157 79858 44 0 1 333 chain 8413 chr5 180915260 + 9329917 9330023 MER2 342 - 52 158 168769 106 chain 22839 chr5 180915260 + 9330259 9330517 AluY 311 + 39 298 116396 93 0 1 165 chain 4495 chr5 180915260 + 9334937 9334992 MER53 195 - 140 195 200837 55 chain 27616 chr5 180915260 + 9400061 9400436 L1PA8 5853 + 5485 5853 94307 76 1 0 49 2 0 69 1 0 10 18 17 34 2 1 19 1 0 93 chain 25385 chr5 180915260 + 9400613 9400880 AluYa5 310 - 6 273 102760 267 chain 24051 chr5 180915260 + 9444318 9444823 L1PB1 5432 - 12 476 110034 16 1 0 13 1 0 5 9 1 12 6 5 22 2 0 14 8 5 19 16 6 6 2 0 16 6 5 39 18 16 44 9 7 11 4 0 12 1 0 8 1 0 24 3 0 9 1 2 147 chain 16220 chr5 180915260 + 9466313 9466491 L1PA4 6152 + 5973 6151 137692 178 chain 10134 chr5 180915260 + 9472118 9472229 L1PA4 6152 - 9 120 159927 111 chain 27108 chr5 180915260 + 9486122 9486552 L1PA8 5853 + 5433 5853 95910 26 1 2 96 8 7 44 2 0 58 1 0 12 30 25 40 1 0 17 1 0 93 chain 5157 chr5 180915260 + 9491310 9491502 L1MC1 2226 + 2015 2185 193473 4 0 1 27 103 82 6 1 0 17 1 0 33 chain 3397 chr5 180915260 + 9500724 9500767 MER53 195 - 11 54 217117 43 chain 103686 chr5 180915260 + 9576778 9577924 L1PA4 6152 + 5001 6151 35805 297 0 4 849 chain 20362 chr5 180915260 + 9579496 9579972 L1PB1 5432 + 5030 5427 126026 73 3 0 8 51 9 18 1 0 9 1 0 11 15 9 53 2 1 15 1 0 44 1 0 10 35 23 14 7 4 15 2 0 15 1 0 9 1 0 21 1 0 13 1 0 18 2 0 5 chain 280084 chr5 180915260 + 9584288 9587333 L1PA3long 6157 - 0 3053 14639 16 0 5 650 1 3 182 0 1 2196 chain 49582 chr5 180915260 + 9591773 9592416 L1PA8 5853 + 5213 5849 59335 351 1 0 44 2 0 74 1 0 8 2 1 49 2 1 15 8 7 86 chain 265930 chr5 180915260 + 9633440 9637180 L1PB2 3958 - 125 3867 15396 58 2 1 21 2 0 72 1 0 64 1 0 73 1 0 93 8 4 9 2 0 9 0 5 47 7 0 16 1 0 52 2 0 47 1 0 4 1 6 185 4 5 4 0 1 133 1 0 136 20 11 56 1 5 174 0 1 5 1 0 50 3 4 434 1 4 5 3 0 371 7 6 65 1 2 9 8 4 46 0 2 24 9 10 8 0 9 121 4 5 98 6 5 50 2 1 13 1 0 6 0 1 100 6 7 49 19 17 62 0 1 107 1 0 219 0 17 103 8 4 31 1 0 114 16 22 103 3 0 19 0 1 27 1 0 5 9 0 37 2 0 30 0 8 9 chain 3159 chr5 180915260 + 9681913 9681992 MER5A1 166 + 49 130 221759 28 30 32 21 chain 11550 chr5 180915260 + 9709152 9709302 L1PA8 5853 + 5705 5853 154101 35 2 1 19 1 0 93 chain 131840 chr5 180915260 + 9725237 9726864 LTR12C 1709 + 0 1709 27667 25 21 17 45 0 3 200 9 0 169 22 12 366 1 0 275 1 0 4 4 2 106 0 4 168 0 102 211 chain 120449 chr5 180915260 + 9745561 9747044 L1PA8 5853 + 4376 5853 30888 371 0 1 816 2 1 42 6 4 64 17 15 50 2 1 19 1 0 93 chain 126705 chr5 180915260 + 9752674 9754097 L1PA4 6152 - 12 1438 28884 135 1 2 720 0 2 567 chain 88253 chr5 180915260 + 9754097 9755082 L1PA4 6152 + 3716 4716 40110 447 0 7 173 0 8 365 chain 6636 chr5 180915260 + 9761025 9761107 5S 121 + 7 90 180195 32 0 1 50 chain 28216 chr5 180915260 + 9777989 9778290 AluYb8 318 - 16 317 92248 301 chain 3562 chr5 180915260 + 9781176 9781215 MLT2C1 407 - 366 405 214299 39 chain 3713 chr5 180915260 + 9796607 9796652 MER81 114 + 41 86 211741 45 chain 21886 chr5 180915260 + 9836068 9836405 THE1B 368 + 0 366 120682 40 0 15 113 1 0 18 55 70 110 chain 106687 chr5 180915260 + 9867755 9869298 THE1B-int 1605 - 7 1579 35071 372 25 26 56 6 10 62 4 5 172 8 14 422 37 102 78 12 18 146 1 4 9 57 0 76 chain 30475 chr5 180915260 + 9881252 9881686 L1PA10 4194 + 3722 4150 83481 11 0 2 127 9 0 37 0 3 110 0 1 69 37 34 34 chain 14093 chr5 180915260 + 9903730 9903910 L1PBa 3878 - 3477 3662 144243 121 0 7 36 2 0 21 chain 3831 chr5 180915260 + 9920720 9920774 MER89 557 - 387 437 209907 37 4 0 13 chain 8842 chr5 180915260 + 9922085 9922217 L1PA8 5853 - 0 130 166423 89 5 4 19 2 1 17 chain 56736 chr5 180915260 + 9925360 9926095 MER4E1 777 + 16 769 54695 118 14 12 159 0 1 42 1 11 182 5 10 23 0 5 22 1 0 168 chain 22409 chr5 180915260 + 9930410 9930716 AluSc5 308 - 4 308 118448 194 14 15 33 3 0 62 chain 25071 chr5 180915260 + 9934300 9934658 THE1C 375 - 12 375 104454 165 13 14 20 6 6 15 7 11 132 chain 234575 chr5 180915260 + 9934718 9937592 L1PA7 6471 - 10 2900 17060 666 0 5 86 0 1 53 1 5 20 0 3 137 7 12 15 1 0 12 3 4 88 2 0 161 0 3 195 1 0 10 0 2 33 1 0 125 1 0 6 11 5 84 1 6 7 5 0 47 0 4 1095 chain 4456 chr5 180915260 + 9941360 9941424 L1MC1 2226 - 28 90 201277 15 1 0 31 1 0 16 chain 25147 chr5 180915260 + 9949707 9950061 THE1B 368 + 0 368 104015 44 10 20 75 0 4 25 1 0 24 1 3 98 1 0 75 chain 108914 chr5 180915260 + 9959912 9961197 L1PA7 6471 - 3 1300 34458 7 2 0 410 0 10 397 0 1 15 0 3 454 chain 13842 chr5 180915260 + 9972700 9972981 L1PB1 5432 + 5167 5427 145092 53 2 1 15 1 0 39 7 6 15 3 0 6 15 6 19 3 1 4 1 0 10 6 4 24 1 0 21 1 0 13 1 0 16 0 2 5 chain 514649 chr5 180915260 + 9990870 9996973 L1PA5 6144 + 0 6132 5709 135 10 24 15 0 4 592 0 1 398 10 1 718 0 1 141 0 2 128 6 5 148 2 1 203 0 22 504 1 0 121 2 1 116 1 0 4 0 1 1194 0 3 811 1 0 274 0 1 41 12 7 515 chain 530394 chr5 180915260 + 10002519 10008953 L1PA5 6144 + 0 6144 4143 304 0 2 1204 0 1 284 0 1 228 0 2 667 9 10 62 301 0 742 1 2 491 0 1 657 3 1 638 0 4 843 chain 27834 chr5 180915260 + 10005279 10005569 AluYa8 305 + 1 291 93580 290 chain 503453 chr5 180915260 + 10011176 10017291 L1PA6 6164 - 10 6164 6643 44 0 4 11 5 7 74 5 0 6 1 6 297 0 6 383 0 4 16 0 4 566 3 4 702 0 1 322 8 9 444 0 4 27 0 7 27 7 14 834 1 3 146 1 0 274 0 1 49 0 1 1051 1 18 219 1 0 53 2 0 66 19 0 450 chain 4277 chr5 180915260 + 10038093 10038141 MLT1C 463 + 360 408 203503 48 chain 4223 chr5 180915260 + 10043415 10043463 MER2 342 - 162 210 204254 48 chain 9591 chr5 180915260 + 10066083 10066383 LTR12C 1709 + 769 1109 162638 68 133 173 58 24 24 17 chain 3845 chr5 180915260 + 10066383 10066430 LTR12C 1709 + 671 718 199857 47 chain 9048 chr5 180915260 + 10080057 10080158 L1PA3long 6157 + 6056 6157 165329 101 chain 287745 chr5 180915260 + 10094062 10097518 L1PA7 6471 + 2924 6424 14176 177 7 22 349 7 15 16 1 0 11 0 7 92 1 0 21 10 11 629 1 0 805 0 1 4 1 0 124 1 0 219 0 1 186 0 3 92 0 2 104 0 9 110 0 2 488 chain 26923 chr5 180915260 + 10102335 10102767 LTR7Y 441 + 0 439 96537 103 10 0 62 63 79 79 0 1 115 chain 3684 chr5 180915260 + 10125493 10125532 MLT1C 463 + 399 438 212171 39 chain 35145 chr5 180915260 + 10129110 10129511 L1PA5 6144 + 5725 6126 76001 401 chain 27163 chr5 180915260 + 10132001 10132521 L1PB1 5432 + 4956 5424 95711 147 24 5 6 1 0 24 1 0 9 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 3 0 7 59 46 21 1 0 21 2 0 13 1 0 16 1 0 4 chain 29353 chr5 180915260 + 10142839 10143233 MLT2A1 477 + 0 401 87279 141 1 2 16 9 14 149 2 1 60 0 2 16 chain 3376 chr5 180915260 + 10146177 10146291 MER91B 187 - 65 176 217562 21 62 59 31 chain 14570 chr5 180915260 + 10159412 10159618 L1PA8 5853 + 5642 5845 142679 35 1 0 12 1 0 5 1 2 44 2 1 19 1 0 85 chain 7782 chr5 180915260 + 10171542 10171635 MLT1A0 366 + 207 300 172408 93 chain 520990 chr5 180915260 + 10177515 10183881 L1PA7 6471 + 0 6466 5056 239 14 24 44 0 1 98 1 2 153 1 33 892 0 4 62 0 1 215 5 6 133 0 8 166 0 2 197 0 11 350 1 0 667 5 6 221 0 1 198 1 0 274 1 0 36 0 24 7 11 2 128 0 1 8 0 1 266 3 4 167 0 11 7 0 8 218 6 7 51 0 1 129 1 0 515 0 4 19 2 0 509 2 0 187 9 1 147 chain 9713 chr5 180915260 + 10185064 10185192 L1PA16 3655 + 2475 2596 162020 41 7 0 80 chain 4451 chr5 180915260 + 10187591 10187648 LTR12F 595 + 104 165 201334 31 0 4 26 chain 25900 chr5 180915260 + 10223665 10224014 THE1B 368 - 0 368 100437 74 1 0 93 0 2 17 0 1 9 8 6 24 0 4 79 0 15 44 chain 120087 chr5 180915260 + 10224014 10225535 THE1B-int 1605 - 0 1560 31027 141 0 1 155 6 7 218 1 12 94 10 7 292 5 8 38 1 2 174 1 26 385 chain 7922 chr5 180915260 + 10225566 10225666 THE1B 368 - 0 99 171510 74 1 0 25 chain 2179 chr5 180915260 + 10225696 10225720 THE1B 368 - 172 196 236847 24 chain 12207 chr5 180915260 + 10225728 10225879 THE1B 368 - 202 368 151391 111 0 15 40 chain 25004 chr5 180915260 + 10237500 10237862 THE1B 368 + 0 368 104758 13 2 0 31 0 15 113 1 0 71 7 0 31 23 24 70 chain 4817 chr5 180915260 + 10238238 10238299 L1MB3 1562 + 1441 1501 197150 27 1 0 33 chain 15284 chr5 180915260 + 10249103 10249394 AluSz6 309 + 1 303 140527 6 3 0 12 32 40 37 14 13 29 0 1 11 6 5 111 3 10 27 chain 3930 chr5 180915260 + 10267493 10267538 Charlie1a 1436 + 101 146 208425 45 chain 9668 chr5 180915260 + 10268461 10268579 MER50 708 - 23 144 162256 65 0 3 53 chain 7867 chr5 180915260 + 10273200 10273290 THE1C 375 - 285 375 171891 90 chain 27706 chr5 180915260 + 10274757 10275134 THE1C 375 - 0 375 94020 26 1 0 149 21 20 180 chain 24467 chr5 180915260 + 10311214 10311873 THE1B 368 - 0 368 107725 168 0 2 24 13 12 56 308 0 10 0 1 31 5 20 44 chain 8560 chr5 180915260 + 10337389 10337496 HY1 111 + 1 111 167960 65 0 3 42 chain 32903 chr5 180915260 + 10338383 10338830 MLT2A1 477 + 0 470 79365 48 0 2 88 1 2 29 0 4 212 6 0 8 5 0 10 5 33 22 1 0 12 chain 8737 chr5 180915260 + 10361512 10361719 MLT1B 390 - 120 315 166994 38 8 12 11 73 57 77 chain 22830 chr5 180915260 + 10365426 10365692 AluSp 311 - 26 300 116442 243 0 8 23 chain 37150 chr5 180915260 + 10366580 10367074 LTR3B_ 500 - 0 500 73308 133 0 2 62 5 6 132 6 9 156 chain 24423 chr5 180915260 + 10371450 10371803 THE1B 368 - 0 368 107951 73 2 0 71 1 8 17 2 0 8 28 19 84 0 6 27 0 15 40 chain 133251 chr5 180915260 + 10375088 10376635 LTR12C 1709 + 0 1709 27382 265 1 2 33 1 2 418 3 160 195 0 2 32 2 1 8 2 0 106 0 4 481 chain 5322 chr5 180915260 + 10475512 10475579 LTR41 747 + 677 744 191802 67 chain 28837 chr5 180915260 + 10524081 10524385 AluYg6 310 + 0 304 89737 304 chain 3853 chr5 180915260 + 10532907 10532949 MLT1C 463 + 59 101 209592 42 chain 3402 chr5 180915260 + 10546822 10546858 MLT1C 463 - 364 400 217036 36 chain 7703 chr5 180915260 + 10566159 10566253 THE1C 375 - 266 375 172920 50 0 15 44 chain 6508 chr5 180915260 + 10590747 10590834 MER30 238 + 156 237 181178 10 6 0 71 chain 99957 chr5 180915260 + 10596651 10597961 L1PA10 4194 + 924 2246 36789 371 5 4 11 0 2 22 2 1 119 7 6 8 0 6 58 0 1 482 6 10 17 0 2 202 chain 28785 chr5 180915260 + 10716495 10716944 MLT2A1 477 + 0 477 89963 48 0 2 12 3 0 76 0 1 23 8 12 21 9 10 66 9 1 32 1 0 19 1 0 62 19 52 40 chain 404200 chr5 180915260 + 10716944 10722217 HERVL-int 5654 + 0 5654 9972 150 1 0 23 1 3 487 13 16 158 28 637 250 9 11 272 0 1 284 10 11 490 2 1 939 4 5 136 254 0 216 1 3 240 23 14 584 0 3 26 0 1 237 0 16 59 0 3 44 6 0 114 0 1 148 1 8 63 chain 12711 chr5 180915260 + 10720294 10720446 HERVL-int 5654 - 2109 2261 149415 152 chain 28000 chr5 180915260 + 10722217 10722610 MLT2A1 477 + 0 394 93002 48 0 2 90 0 1 21 8 12 21 8 9 101 1 0 19 1 0 59 5 0 11 chain 4207 chr5 180915260 + 10741816 10742003 MER82 654 - 41 219 204454 39 83 68 19 12 15 12 7 10 15 chain 296920 chr5 180915260 + 10780089 10783976 L1P2 5180 + 22 3622 13593 128 2 1 96 5 4 256 1 0 8 1 0 272 1 0 5 1 0 141 0 25 318 312 8 1043 6 4 782 0 1 69 1 0 439 chain 18538 chr5 180915260 + 10783976 10784182 L1P1 4361 - 117 322 130653 96 1 0 109 chain 6569 chr5 180915260 + 10793422 10793511 MER50B 698 + 608 698 180710 54 0 3 26 2 0 7 chain 322642 chr5 180915260 + 10813107 10817698 L1PA11 4918 + 3 4628 12497 28 12 10 44 4 1 13 0 1 15 0 2 11 2 0 53 9 8 22 11 8 51 0 10 36 0 1 34 0 5 49 0 1 160 0 1 7 1 2 168 0 1 115 0 38 131 1 0 376 6 4 96 0 1 309 9 6 156 0 2 102 0 3 107 4 6 10 0 1 32 2 0 7 6 12 586 0 1 70 0 1 4 0 2 387 2 0 5 1 12 205 0 1 100 0 5 51 8 0 7 5 8 298 0 3 6 0 5 49 26 24 32 57 51 36 8 1 43 4 2 77 2 1 9 0 1 43 15 14 16 0 1 31 6 10 15 171 139 17 chain 235320 chr5 180915260 + 10819450 10822739 L1PA13 3608 - 120 3390 17009 22 1 0 18 11 7 45 2 0 10 7 2 28 1 0 21 1 0 62 12 10 100 4 3 32 1 0 395 0 3 140 1 5 75 0 1 97 1 0 167 15 0 146 0 1 29 1 5 62 0 2 8 1 8 31 2 1 9 1 0 45 5 4 235 1 2 86 1 2 273 0 1 81 6 14 298 1 0 92 6 5 17 0 2 155 2 0 98 1 0 13 7 5 17 2 0 17 1 0 18 6 2 16 2 0 17 1 0 15 1 0 7 10 13 102 7 5 68 chain 120876 chr5 180915260 + 10843373 10844886 THE1B-int 1605 - 13 1560 30735 413 0 1 500 0 3 103 1 2 35 0 3 76 1 26 204 0 1 180 chain 28001 chr5 180915260 + 10867637 10868004 MER51B 395 + 6 395 93000 239 1 0 38 7 11 6 0 2 31 1 5 17 0 13 27 chain 9758 chr5 180915260 + 10880230 10880495 L1MA8 2339 + 1902 2148 161806 18 1 0 4 6 7 28 1 0 6 20 24 20 1 0 65 71 50 24 chain 18294 chr5 180915260 + 10882971 10883194 AluSp 311 + 84 302 132091 45 2 0 154 3 0 19 chain 37825 chr5 180915260 + 10884159 10884648 L1PA7 6471 + 6024 6469 72373 150 40 0 285 4 0 10 chain 22237 chr5 180915260 + 10897002 10897589 MLT2A2 560 - 279 560 119180 127 306 0 154 chain 162670 chr5 180915260 + 10925587 10927535 L1PA6 6164 + 1037 6160 22981 302 8 3177 192 1 0 332 0 1 309 0 4 185 0 1 462 18 19 139 chain 45380 chr5 180915260 + 10931145 10931698 HERVL-int 5654 + 4017 4574 62616 74 0 2 11 0 1 464 0 1 4 chain 51358 chr5 180915260 + 10940925 10941556 L1PA8 5853 + 5227 5853 58056 319 0 1 17 1 0 44 2 0 57 0 1 13 1 0 16 2 0 65 1 0 93 chain 30536 chr5 180915260 + 10952947 10953460 L1PB1 5432 + 4934 5420 83359 169 1 4 7 1 0 20 1 0 13 1 0 10 6 2 61 2 1 16 1 0 40 12 11 10 13 0 29 28 23 23 1 0 18 1 0 29 chain 5621 chr5 180915260 + 10958865 10958933 L1MB1 2102 - 1324 1392 188859 68 chain 24892 chr5 180915260 + 10959876 10960231 THE1B 368 + 2 368 105399 42 0 15 90 24 23 19 0 2 9 4 0 92 1 0 74 chain 12478 chr5 180915260 + 10962277 10962430 LTR18B 584 + 0 153 150350 153 chain 108398 chr5 180915260 + 10979812 10981149 L1PA7 6471 + 5106 6454 34593 367 0 1 51 0 1 99 0 4 179 1 3 211 7 5 110 1 0 45 0 1 92 1 5 26 0 1 147 chain 8061 chr5 180915260 + 11005989 11006085 L1PA7 6471 + 6373 6469 170691 96 chain 6064 chr5 180915260 + 11027311 11027382 U6 107 + 0 70 184707 48 1 0 22 chain 5897 chr5 180915260 + 11028735 11028804 L1MB2 1706 - 217 286 186206 69 chain 22695 chr5 180915260 + 11034987 11035235 L1PA3long 6157 - 1 249 117102 248 chain 27941 chr5 180915260 + 11057366 11057717 THE1B 368 + 0 348 93197 172 2 1 26 2 0 149 chain 120263 chr5 180915260 + 11057738 11059297 THE1B-int 1605 + 1 1597 30959 421 4 29 492 9 19 29 1 2 399 7 8 197 chain 9476 chr5 180915260 + 11059305 11059423 THE1B 368 + 0 118 163187 118 chain 18446 chr5 180915260 + 11059441 11059676 THE1B 368 + 136 368 131653 38 1 0 17 3 1 176 chain 58648 chr5 180915260 + 11065717 11066825 MER4E1 777 + 0 777 53608 24 4 5 71 0 1 323 311 0 107 56 20 41 1 14 39 0 1 131 chain 5198 chr5 180915260 + 11095984 11096076 L1MEc 1507 - 461 547 193040 21 1 0 21 2 1 8 1 0 27 3 0 8 chain 28910 chr5 180915260 + 11096297 11096647 L1PA7 6471 - 18 370 89416 87 0 1 55 3 4 205 chain 26277 chr5 180915260 + 11142720 11143000 AluYg6 310 - 7 287 98913 280 chain 4680 chr5 180915260 + 11164164 11164366 MLT1D 503 - 201 422 198757 10 5 0 11 90 115 47 24 23 15 chain 30040 chr5 180915260 + 11207138 11207507 L1PA7 6471 + 6100 6470 84684 356 1 2 12 chain 28886 chr5 180915260 + 11230177 11230490 L1PA2 6032 + 5717 6030 89504 313 chain 17697 chr5 180915260 + 11232911 11233223 THE1D 372 + 0 321 133709 47 3 0 20 11 12 34 1 0 67 47 59 82 chain 3592 chr5 180915260 + 11242663 11242742 MER20 218 + 96 177 213799 28 19 20 12 1 2 19 chain 213943 chr5 180915260 + 11294697 11297097 L1PA4 6152 + 3741 6143 18231 236 0 1 1270 3 4 891 chain 21452 chr5 180915260 + 11303910 11304300 THE1B 368 + 0 368 122328 111 5 6 57 26 19 7 1 0 14 0 4 6 21 29 53 7 6 16 26 0 40 chain 30368 chr5 180915260 + 11312407 11312758 THE1A 353 - 0 353 83744 156 0 3 84 1 0 110 chain 38731 chr5 180915260 + 11316620 11317051 L1PA4 6152 - 16 448 71107 255 0 1 176 chain 5247 chr5 180915260 + 11329578 11329676 MLT1B 390 - 289 390 192546 10 0 1 40 8 7 10 6 9 24 chain 5740 chr5 180915260 + 11335916 11336041 MER51A 677 + 311 417 187737 33 48 29 44 chain 3765 chr5 180915260 + 11336059 11336106 MER51A 677 + 201 253 210894 7 0 5 40 chain 29223 chr5 180915260 + 11339039 11339349 AluYf4 310 - 0 310 87942 310 chain 26463 chr5 180915260 + 11344235 11344517 AluYd8 298 + 1 283 98194 282 chain 22419 chr5 180915260 + 11403161 11403514 L1PA8 5853 - 0 347 118383 92 2 1 19 2 1 10 56 55 67 2 0 46 1 0 56 chain 28495 chr5 180915260 + 11427957 11428307 THE1A 353 - 2 353 91202 324 0 1 26 chain 22635 chr5 180915260 + 11454258 11454542 AluSc 308 + 7 289 117396 271 3 1 10 chain 14090 chr5 180915260 + 11517707 11517900 L1PA8 5853 + 5665 5853 144258 17 1 0 13 2 0 45 2 1 19 1 0 93 chain 23320 chr5 180915260 + 11536485 11536958 L1PB1 5432 + 4963 5404 114094 140 17 15 20 1 0 4 4 3 12 6 2 9 2 0 52 2 1 12 8 7 41 1 0 15 24 12 16 31 26 20 1 0 22 2 1 11 chain 28817 chr5 180915260 + 11611081 11611455 THE1C 375 + 0 374 89815 118 1 0 158 2 3 27 0 1 43 1 0 24 chain 2911 chr5 180915260 + 11615346 11615377 MADE1 96 + 56 87 226851 31 chain 12235 chr5 180915260 + 11623696 11623901 L1PREC2 3366 + 323 528 151284 31 0 1 4 1 0 46 17 16 44 5 6 57 chain 36253 chr5 180915260 + 11643349 11643751 L1PA4 6152 - 1 402 74557 366 1 0 35 chain 4104 chr5 180915260 + 11662048 11662098 MLT2A2 560 - 0 54 205889 6 0 4 44 chain 478471 chr5 180915260 + 11666881 11673154 L1PA7 6471 - 2 6450 7783 10 3 0 83 0 1 43 11 12 188 0 1 390 0 1 92 0 1 26 6 5 259 0 1 324 0 1 456 0 1 4 1 0 86 4 0 6 3 7 201 34 35 234 0 1 41 0 1 288 4 1 94 1 5 7 0 15 51 3 0 7 1 0 4 1 2 241 4 0 8 21 25 167 0 1 355 0 1 24 5 0 24 1 2 16 37 15 45 0 1 74 1 0 1174 49 0 11 1 50 347 15 15 144 13 23 70 9 8 133 19 189 109 12 11 73 0 2 105 chain 8337 chr5 180915260 + 11675890 11675996 L1P2 5180 - 3706 3812 169187 106 chain 11599 chr5 180915260 + 11676091 11676230 L1P3 4156 + 936 1075 153889 139 chain 25800 chr5 180915260 + 11690601 11690884 AluYb8 318 + 38 318 100868 94 3 0 186 chain 181712 chr5 180915260 + 11739668 11741836 L1PA6 6164 + 4012 6160 20816 113 0 4 229 4 8 952 0 5 23 0 10 3 42 0 628 1 0 173 chain 17647 chr5 180915260 + 11741951 11742305 L1PB1 5432 + 5103 5424 133847 11 1 0 24 1 0 8 1 0 5 11 7 10 2 0 52 2 1 15 1 0 44 1 0 16 1 0 4 3 0 11 8 0 15 3 1 5 1 0 14 2 0 17 8 7 21 1 0 12 2 1 10 1 0 10 chain 12131 chr5 180915260 + 11774330 11774460 L1PA2 6032 - 261 391 151687 130 chain 19699 chr5 180915260 + 11774460 11774671 L1PA2 6032 + 5817 6028 128104 211 chain 26316 chr5 180915260 + 11788808 11789101 L1PA5 6144 - 16 309 98759 293 chain 23653 chr5 180915260 + 11802408 11802692 AluSp 311 + 11 295 112292 284 chain 25001 chr5 180915260 + 11803169 11803450 AluSc5 308 + 18 299 104783 281 chain 16438 chr5 180915260 + 11849161 11849488 THE1B 368 - 26 368 137101 30 11 10 53 13 21 11 5 9 8 1 0 7 24 19 32 7 11 11 2 0 6 0 3 98 0 5 8 chain 8346 chr5 180915260 + 11850099 11850196 L1PA7 6471 + 6369 6466 169144 97 chain 71697 chr5 180915260 + 11872024 11872887 L1PA7 6471 - 3 895 47606 14 3 5 24 0 23 702 0 2 82 0 2 38 chain 27235 chr5 180915260 + 11872889 11873222 L1PA7 6471 + 5233 5575 95478 74 4 9 244 0 4 11 chain 114135 chr5 180915260 + 11883304 11884664 L1PA7 6471 - 10 1375 33055 139 2 0 11 1 3 170 0 1 427 0 1 92 0 3 518 chain 9995 chr5 180915260 + 11922932 11923065 THE1D 372 + 2 135 160608 66 1 2 8 1 0 57 chain 13281 chr5 180915260 + 11923078 11923278 THE1D-int 1627 + 1452 1622 147171 99 34 4 67 chain 12593 chr5 180915260 + 11972346 11972479 AluYb8 318 + 183 316 149868 133 chain 92592 chr5 180915260 + 11995041 11996202 L1PA7 6471 + 5279 6457 38788 40 22 23 139 0 1 11 0 5 123 11 10 252 0 1 418 1 0 5 8 9 81 1 11 49 chain 7232 chr5 180915260 + 11996214 11996308 L1P4 1494 - 1012 1105 175876 28 1 0 65 chain 110621 chr5 180915260 + 12007769 12009340 THE1B-int 1605 - 11 1605 34048 6 6 0 29 0 4 17 0 1 44 0 1 471 3 5 54 17 18 124 5 6 51 5 14 73 1 0 103 6 7 46 2 1 68 38 21 86 0 2 144 0 24 131 16 18 25 chain 7786 chr5 180915260 + 12032339 12032531 THE1D-int 1627 + 1420 1604 172383 29 9 7 24 11 15 13 7 0 10 1 0 36 1 0 5 20 19 26 chain 401790 chr5 180915260 + 12037146 12042569 L1PB1 5432 + 19 5420 10032 82 4 5 295 2 0 9 0 2 196 0 1 86 9 8 59 0 2 620 2 3 22 25 7 55 0 9 388 1 2 146 7 12 195 0 1 38 0 1 4 3 2 229 3 4 110 0 5 6 15 10 208 2 1 771 0 1 21 9 0 64 3 4 16 3 12 382 1 0 367 13 18 130 3 0 100 0 4 70 5 13 145 4 0 143 1 0 11 3 0 22 1 0 10 1 0 12 4 0 9 2 0 30 0 1 22 3 2 11 20 19 25 90 68 6 0 3 16 1 0 21 1 0 13 1 0 16 chain 8288 chr5 180915260 + 12058689 12058787 L1PA4 6152 - 544 642 169467 98 chain 47512 chr5 180915260 + 12058787 12059313 L1PA4 6152 + 5611 6138 60832 427 0 1 99 chain 32673 chr5 180915260 + 12079486 12079915 THE1B-int 1605 - 1180 1605 79727 162 7 8 221 6 1 33 chain 17076 chr5 180915260 + 12087763 12088000 L1PB3 3668 + 3215 3450 135389 75 1 0 96 6 5 59 chain 3801 chr5 180915260 + 12088750 12089110 MSTD 398 - 20 379 210376 18 39 40 28 244 242 31 chain 4332 chr5 180915260 + 12107521 12107582 MER2 342 + 80 142 202799 29 1 2 31 chain 170862 chr5 180915260 + 12125770 12127991 L1P2 5180 + 2 2224 21957 148 1 0 34 5 1 9 1 0 53 17 16 252 2 1 47 3 5 216 1 16 11 17 0 84 4 8 459 9 10 527 0 2 6 1 2 42 0 1 272 chain 179514 chr5 180915260 + 12129281 12131721 L1PA8A 6298 + 3922 6292 21029 158 0 2 54 3 4 301 1 0 6 1 2 50 0 1 4 0 1 431 0 20 533 2 1 550 76 1 107 3 4 51 41 20 64 0 1 4 chain 28645 chr5 180915260 + 12151538 12151845 AluYk11 308 - 1 308 90537 307 chain 21208 chr5 180915260 + 12152298 12152579 L1P3 4156 + 3677 3941 123186 23 17 0 241 chain 513396 chr5 180915260 + 12153344 12159760 L1PA7 6471 + 19 6464 5844 129 0 6 6 18 12 65 15 25 149 0 1 202 0 1 75 29 28 205 0 1 65 0 2 397 5 8 185 7 9 913 0 2 135 0 1 253 0 3 600 1 0 32 6 1 140 0 7 264 0 1 889 5 6 456 0 2 290 1 0 36 5 8 58 1 2 249 4 0 526 chain 27839 chr5 180915260 + 12186501 12186791 AluYa5 310 - 4 294 93565 290 chain 55772 chr5 180915260 + 12197506 12198104 L1HS 6032 - 0 598 55260 598 chain 45487 chr5 180915260 + 12210644 12211423 L1MA5A 2387 + 1569 2301 62508 67 1 0 52 1 0 4 0 1 32 6 0 6 33 32 15 11 13 80 2 1 114 1 0 47 1 0 35 2 1 39 1 0 47 2 0 30 1 0 27 53 21 63 1 0 5 chain 177534 chr5 180915260 + 12252618 12254565 L1PA2 6032 + 4094 6032 21206 520 9 0 1418 chain 49825 chr5 180915260 + 12294357 12294958 MER11D 897 + 269 897 59138 98 9 13 214 0 23 280 chain 7720 chr5 180915260 + 12305433 12305523 MER85 139 - 43 133 172789 90 chain 4200 chr5 180915260 + 12313841 12313894 L1MB1 2102 + 1954 2007 204531 53 chain 25234 chr5 180915260 + 12328015 12328342 THE1B 368 + 0 341 103569 44 0 15 113 1 0 65 1 0 48 0 1 55 chain 34251 chr5 180915260 + 12328481 12328938 L1PA7 6471 - 7 451 77278 5 3 0 149 12 2 288 chain 7919 chr5 180915260 + 12329342 12329654 L1MB8 1703 + 73 422 171527 49 126 159 4 1 0 33 0 4 19 50 51 30 chain 43632 chr5 180915260 + 12331065 12331685 LTR9B 643 + 5 630 64647 60 0 3 115 1 2 19 1 3 7 0 2 207 14 16 30 0 1 4 3 1 110 2 0 12 8 6 27 chain 54010 chr5 180915260 + 12332373 12333106 MER4E1 777 - 9 777 56358 14 1 3 180 0 31 102 0 1 195 0 1 4 6 5 175 6 8 28 1 0 21 chain 84509 chr5 180915260 + 12333345 12334739 L1PB1 5432 - 10 1319 41712 18 1 0 12 2 1 21 1 0 17 91 73 44 18 16 50 4 2 10 5 1 13 1 0 6 1 0 24 58 11 98 5 3 166 7 6 88 1 0 4 1 2 28 1 0 78 12 9 264 0 1 186 1 0 57 chain 6928 chr5 180915260 + 12335143 12335243 LTR59 565 + 399 493 177979 23 5 0 33 1 0 38 chain 2537 chr5 180915260 + 12357127 12357231 MER33 330 + 180 281 232686 28 61 58 15 chain 23396 chr5 180915260 + 12374220 12374506 L1PA5 6144 + 5858 6144 113667 286 chain 53690 chr5 180915260 + 12397026 12397641 L1PA5 6144 + 5525 6140 56550 615 chain 6631 chr5 180915260 + 12435538 12435616 THE1B 368 - 288 368 180234 17 0 2 61 chain 143130 chr5 180915260 + 12449892 12451592 L1PA7 6471 + 4755 6464 25634 441 1 0 427 0 4 459 0 5 228 1 2 143 chain 35339 chr5 180915260 + 12452916 12453296 L1HS 6032 - 2 382 75752 380 chain 173103 chr5 180915260 + 12453296 12455215 L1P1 4361 + 2411 4328 21698 1740 1 0 154 1 0 23 chain 43723 chr5 180915260 + 12460966 12461524 LTR10E 629 + 0 561 64539 8 0 1 5 1 0 150 0 2 62 0 2 64 6 5 262 chain 7041 chr5 180915260 + 12484557 12484646 MSTB 430 - 15 105 177173 41 0 1 48 chain 10051 chr5 180915260 + 12490323 12490434 LTR7Y 441 + 330 441 160316 111 chain 250861 chr5 180915260 + 12490434 12493557 HERVH-int 3825 + 0 3482 16188 159 1 7 323 2 0 11 37 31 39 2 1 9 1 0 24 29 0 15 1 0 12 12 70 55 0 1 7 12 17 689 0 35 180 3 31 299 0 10 187 0 3 42 0 1 230 5 48 365 1 0 219 4 214 148 chain 36524 chr5 180915260 + 12494159 12494592 LTR7Y 441 + 0 403 74210 165 31 0 158 0 1 79 chain 106744 chr5 180915260 + 12518509 12520235 THE1A-int 1579 - 0 1575 35048 481 6 152 85 326 0 18 1 19 136 0 9 37 10 12 136 1 0 80 0 1 409 chain 28446 chr5 180915260 + 12524518 12524851 L1PA4 6152 + 5819 6152 91388 122 0 2 203 2 0 6 chain 59013 chr5 180915260 + 12534625 12535271 L1PA3long 6157 + 5511 6157 53387 646 chain 19307 chr5 180915260 + 12544298 12544646 THE1B 368 - 20 368 129222 69 88 89 21 1 0 169 chain 10107 chr5 180915260 + 12549058 12549272 MER30 238 + 0 227 160062 16 33 21 21 10 12 29 10 0 14 1 34 80 chain 24122 chr5 180915260 + 12553885 12554169 AluYc 301 + 1 287 109632 119 0 2 165 chain 50219 chr5 180915260 + 12574055 12574614 LTR12C 1709 - 1144 1709 58854 520 0 6 39 chain 16324 chr5 180915260 + 12574614 12574812 LTR12C 1709 - 1133 1328 137426 111 4 1 83 chain 26811 chr5 180915260 + 12574812 12575145 LTR12C 1709 - 1371 1709 96941 308 1 6 24 chain 138225 chr5 180915260 + 12575955 12577581 L1PA5 6144 + 4486 6144 26446 157 0 10 106 1 23 510 2 6 85 1 0 453 1 0 296 3 1 11 chain 21935 chr5 180915260 + 12604305 12604750 L1PA15 4387 - 34 460 120479 24 25 19 28 3 0 5 1 0 7 6 3 50 1 0 7 4 0 25 1 0 46 20 19 16 13 13 24 11 12 58 0 1 64 1 0 5 chain 15234 chr5 180915260 + 12632824 12633023 AluSp 311 + 82 286 140675 153 14 18 17 0 1 15 chain 31194 chr5 180915260 + 12639756 12640142 L1P2 5180 - 3431 3827 82171 296 0 5 14 8 13 68 chain 26126 chr5 180915260 + 12640224 12640540 L1PA7 6471 + 6119 6465 99498 41 0 34 264 4 0 7 chain 64084 chr5 180915260 + 12660493 12661271 LTR17 781 - 0 781 50972 12 0 1 67 0 1 325 11 12 36 1 0 240 0 1 86 chain 11895 chr5 180915260 + 12662486 12663003 LTR12C 1709 + 772 1541 152627 65 1 0 20 80 2 50 258 589 43 chain 296438 chr5 180915260 + 12664340 12667991 HERVH-int 3825 - 0 3825 13622 236 1 0 251 8 218 857 0 1 546 4 31 462 14 0 439 57 55 7 0 20 46 1 0 25 24 0 12 1 0 15 51 1 14 1 0 9 1 0 10 1 0 38 5 0 150 0 4 155 0 11 161 0 2 49 chain 38633 chr5 180915260 + 12667993 12668442 LTR7 482 - 0 482 71243 115 1 2 70 0 31 37 0 1 226 chain 164426 chr5 180915260 + 12672704 12674833 L1P3 4156 - 2020 4150 22756 138 4 1 494 8 11 160 0 1 363 0 3 143 6 5 157 0 1 241 10 9 89 2 1 67 2 1 245 chain 7526 chr5 180915260 + 12676873 12676983 LTR26 622 - 507 620 173998 67 8 11 35 chain 7946 chr5 180915260 + 12685840 12685936 MLT2B2 565 + 0 96 171356 96 chain 10780 chr5 180915260 + 12762384 12762693 L1MA4 2864 - 71 351 157073 20 159 130 130 chain 49145 chr5 180915260 + 12796287 12796978 LTR12 884 + 2 884 59638 23 1 0 27 0 2 24 26 1 186 0 113 85 9 8 77 0 103 97 0 8 67 8 0 61 chain 2109 chr5 180915260 + 12796362 12796388 LTR12 884 + 185 211 138179 26 chain 18008 chr5 180915260 + 12835270 12835487 L1PA6 6164 - 22 240 132838 125 2 3 90 chain 12716 chr5 180915260 + 12852525 12852673 L1PA4 6152 + 5963 6143 149395 102 0 32 46 chain 183126 chr5 180915260 + 12853763 12855985 HERV9-int 5642 + 1602 4824 20667 181 5 8 718 0 1 257 0 81 162 7 942 102 0 1 392 22 0 264 0 1 112 chain 17956 chr5 180915260 + 12870414 12870611 L1PA4 6152 - 3 200 132967 197 chain 3768 chr5 180915260 + 12887362 12887408 MLT1F2-int 1139 - 601 647 210852 46 chain 57341 chr5 180915260 + 12904586 12905332 HERVL-int 5654 + 1648 2406 54317 165 0 1 138 1 0 5 11 14 108 5 14 313 chain 3852 chr5 180915260 + 12915929 12915975 MLT2A2 560 - 0 46 209630 46 chain 389107 chr5 180915260 + 12916519 12921500 HERVL-int 5654 - 0 5022 10481 69 8 0 28 0 1 125 0 1 137 0 3 5 9 6 207 7 8 184 0 1 300 0 1 853 2 3 100 1 3 515 0 1 422 0 15 118 0 1 165 0 1 527 7 8 33 0 1 11 1 2 67 6 8 613 1 2 51 1 0 228 5 6 10 0 1 11 0 5 97 0 1 41 1 11 15 chain 26069 chr5 180915260 + 12927302 12927610 L1PA7 6471 + 6163 6468 99754 146 1 0 150 2 0 9 chain 118619 chr5 180915260 + 12939531 12940872 L1PA4 6152 + 4808 6152 31569 149 0 1 243 4 0 100 0 1 839 0 5 6 chain 11306 chr5 180915260 + 12945583 12945723 MSTA 426 + 7 147 155043 140 chain 7583 chr5 180915260 + 12972948 12973040 MER85 139 + 0 92 173651 92 chain 20004 chr5 180915260 + 12990157 12990378 L1PA3long 6157 - 1955 2176 126580 221 chain 174453 chr5 180915260 + 12990378 12992308 L1PA3long 6157 + 4215 6152 21544 1094 0 7 836 chain 10819 chr5 180915260 + 13038346 13038588 MER44A 345 - 11 243 156905 30 23 24 26 13 0 54 9 10 26 9 13 44 3 0 5 chain 87398 chr5 180915260 + 13072733 13073916 MER11A 1151 - 0 1148 40608 144 12 13 100 0 32 450 0 1 22 0 1 83 0 11 60 0 4 31 2 0 114 89 6 76 chain 7468 chr5 180915260 + 13073751 13073840 MER11A 1151 - 975 1064 163567 89 chain 112931 chr5 180915260 + 13074254 13075674 L1PA8 5853 - 6 1419 33395 87 1 0 19 2 1 35 12 11 15 1 0 71 2 0 46 1 0 156 2 1 352 5 8 36 2 0 575 chain 4276 chr5 180915260 + 13084400 13084474 LTR32 486 + 255 364 203521 30 14 49 30 chain 10633 chr5 180915260 + 13085426 13085580 L1PA8 5853 - 0 151 157682 92 2 1 19 2 1 32 1 0 6 chain 53431 chr5 180915260 + 13113828 13114480 L1PA7 6471 + 5814 6470 56739 323 0 1 173 2 3 142 0 2 12 chain 96708 chr5 180915260 + 13124753 13126040 L1PA8 5853 + 4552 5853 37643 200 12 7 33 0 16 197 3 7 58 12 14 340 0 1 96 0 3 40 1 0 44 2 0 67 5 4 13 1 0 48 2 1 19 1 0 93 chain 6066 chr5 180915260 + 13130572 13130654 L1PA8 5853 + 5166 5251 184696 23 0 3 59 chain 33654 chr5 180915260 + 13130654 13131072 L1PA8 5853 + 5256 5675 78161 308 1 0 44 2 0 6 8 12 49 chain 5204 chr5 180915260 + 13131088 13131153 L1PA8 5853 + 5693 5757 192985 51 1 0 13 chain 6637 chr5 180915260 + 13131159 13131249 L1PA8 5853 + 5762 5853 180187 15 1 0 6 0 3 12 1 0 55 chain 39739 chr5 180915260 + 13135946 13136435 MER9a1 513 - 5 513 69702 52 4 0 76 0 2 111 1 23 41 1 0 203 chain 45092 chr5 180915260 + 13136644 13137151 L1PA3long 6157 - 10 517 62945 507 chain 71423 chr5 180915260 + 13137151 13137935 L1PA3long 6157 + 4829 5611 47735 166 1 0 389 1 0 227 chain 36294 chr5 180915260 + 13140737 13141156 L1PA3long 6157 - 0 416 74511 5 2 0 50 0 4 280 1 0 67 4 0 10 chain 145541 chr5 180915260 + 13147761 13149538 HERVL-int 5654 - 3871 5654 25248 249 3 0 1053 0 3 59 1 7 412 chain 102952 chr5 180915260 + 13151499 13152805 L1PA8A 6298 - 1170 2484 36007 30 12 4 44 4 5 219 1 0 90 0 3 445 1 10 171 0 1 27 1 2 198 0 1 29 0 1 34 chain 89672 chr5 180915260 + 13152805 13153959 L1PA8A 6298 + 5139 6292 39756 69 2 3 4 1 0 230 3 0 90 3 4 341 12 13 399 chain 21799 chr5 180915260 + 13155691 13155987 AluSq4 311 - 11 301 121025 7 7 0 141 0 3 7 7 4 11 2 3 114 chain 15673 chr5 180915260 + 13195854 13196075 MLT2A1 477 + 217 470 139358 168 8 0 8 2 42 35 chain 423136 chr5 180915260 + 13196089 13201638 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13827806 THE1C-int 1605 + 1388 1600 132867 212 chain 5113 chr5 180915260 + 13827811 13827880 THE1C 375 + 0 70 193943 50 0 1 19 chain 4344 chr5 180915260 + 13827945 13827992 THE1C 375 + 139 186 202679 47 chain 4770 chr5 180915260 + 13849170 13849230 L1PA4 6152 - 0 67 197685 6 0 7 54 chain 452824 chr5 180915260 + 13852582 13858687 L1PA7 6471 + 403 6469 8662 399 1 2 63 3 2 120 0 1 232 0 1 940 0 4 348 4 6 329 627 0 653 1 0 220 9 140 154 0 1 145 12 16 21 0 1 370 1 0 7 0 1 616 0 1 153 0 1 95 1 444 563 0 1 6 2 0 10 chain 29157 chr5 180915260 + 13855313 13855616 AluYa5 310 - 7 310 88271 303 chain 27775 chr5 180915260 + 13895092 13895386 AluYa5 310 + 0 293 93779 132 1 0 161 chain 4673 chr5 180915260 + 13919908 13919980 MADE1 96 - 0 96 198833 22 8 32 42 chain 6627 chr5 180915260 + 13921124 13921197 L1PA4 6152 + 6078 6151 180256 73 chain 375143 chr5 180915260 + 13966014 13971833 L1PB1 5432 - 30 5413 10914 9 1 0 23 1 0 24 48 60 5 1 0 42 3 2 16 2 1 33 6 2 13 23 16 12 4 2 28 37 11 197 3 1 92 0 1 4 2 4 97 0 2 79 3 0 87 0 9 33 329 4 272 10 11 177 53 35 30 123 2 234 6 0 9 4 0 86 10 25 223 2 1 529 4 0 570 12 22 370 3 13 34 0 4 130 0 2 140 0 1 95 0 7 24 3 0 35 3 0 10 10 15 121 9 11 25 0 2 6 0 2 71 9 10 14 6 7 349 0 4 174 51 64 191 32 30 279 6 0 8 chain 16942 chr5 180915260 + 13975179 13975524 THE1B 368 - 0 367 135745 90 1 2 33 71 92 16 27 28 59 0 1 32 2 0 14 chain 3157 chr5 180915260 + 13975879 13975933 LTR67B 553 + 66 109 221795 36 11 0 7 chain 39334 chr5 180915260 + 13984461 13984921 L1P1 4361 - 42 500 70274 11 4 3 157 1 0 287 chain 54633 chr5 180915260 + 13984922 13985538 L1PA5 6144 + 5519 6135 55947 616 chain 3422 chr5 180915260 + 13996038 13996077 Arthur1B 1073 - 357 396 216737 39 chain 74070 chr5 180915260 + 14020920 14021730 L1PA4 6152 - 6 816 46477 810 chain 4219 chr5 180915260 + 14037792 14037841 L1MB5 1630 + 1394 1443 204304 49 chain 3124 chr5 180915260 + 14041436 14041472 LTR16E1 515 + 479 515 222495 36 chain 12366 chr5 180915260 + 14053659 14053832 Tigger3b 1229 + 392 573 150771 67 8 16 98 chain 23798 chr5 180915260 + 14056811 14057099 AluY 311 + 18 294 111486 114 0 1 148 13 0 13 chain 5937 chr5 180915260 + 14077015 14077088 MER30 238 - 11 81 185811 34 3 0 36 chain 21571 chr5 180915260 + 14101112 14101383 AluSc 308 + 7 287 121875 216 6 15 49 chain 40703 chr5 180915260 + 14103251 14103777 LTR10G 522 + 0 522 68298 353 1 0 95 4 1 73 chain 21692 chr5 180915260 + 14135698 14136032 THE1C 375 + 0 335 121421 138 1 5 36 0 2 5 36 31 118 chain 25895 chr5 180915260 + 14163120 14163496 L1PA8 5853 - 0 364 100461 91 6 5 16 2 1 47 6 5 8 6 0 70 2 0 46 1 0 75 chain 20928 chr5 180915260 + 14201996 14202226 L1PA4 6152 + 5910 6141 124181 128 0 1 102 chain 13751 chr5 180915260 + 14202351 14202542 MER30 238 + 58 238 145433 40 10 0 38 0 3 54 3 0 14 1 0 31 chain 78249 chr5 180915260 + 14392224 14393494 L1PA7 6471 + 5489 6452 44391 135 0 1 4 1 2 77 0 3 25 0 1 8 0 2 263 0 2 131 318 0 127 1 2 180 chain 25144 chr5 180915260 + 14409668 14409966 AluY 311 + 7 305 104036 125 0 1 28 1 0 144 chain 24833 chr5 180915260 + 14436206 14436549 THE1B 368 - 0 368 105709 18 7 22 129 4 0 30 1 0 114 0 15 40 chain 39142 chr5 180915260 + 14436549 14437099 THE1B-int 1605 - 0 561 70552 82 0 5 280 0 5 67 29 33 27 13 11 8 1 0 43 chain 15422 chr5 180915260 + 14455412 14455675 LTR12C 1709 - 832 1055 140124 40 1 0 64 15 0 8 0 15 47 39 0 49 chain 2352 chr5 180915260 + 14455595 14455621 LTR12C 1709 - 973 999 234776 26 chain 3349 chr5 180915260 + 14455773 14455815 LTR12C 1709 - 549 591 218072 42 chain 10037 chr5 180915260 + 14551660 14551781 LTR40a 516 + 382 503 160396 121 chain 15059 chr5 180915260 + 14554399 14554761 THE1B 368 + 0 368 141143 19 1 2 86 31 32 38 23 16 10 27 39 53 41 40 33 chain 31135 chr5 180915260 + 14556051 14556579 MER4D1 891 - 76 583 82276 60 0 1 40 74 46 7 5 0 56 0 7 70 0 1 15 0 7 14 2 0 5 0 2 9 1 0 45 1 0 20 1 0 42 1 0 60 chain 123555 chr5 180915260 + 14565850 14567410 THE1A-int 1579 - 13 1579 29858 67 0 5 120 1 0 99 0 1 476 0 1 6 5 4 255 0 1 531 chain 13544 chr5 180915260 + 14569879 14570062 MER30 238 + 46 238 146195 43 0 1 23 4 15 71 3 0 39 chain 3985 chr5 180915260 + 14577891 14578201 LTR12C 1709 + 676 1067 207623 14 238 0 24 0 319 34 chain 27996 chr5 180915260 + 14600148 14600507 THE1C 375 + 0 368 93010 46 0 7 77 5 9 25 1 0 186 1 0 18 chain 18082 chr5 180915260 + 14606142 14606503 THE1B 368 - 0 368 132645 74 1 0 6 5 1 46 0 2 16 54 51 18 19 0 9 11 28 58 0 15 44 chain 27999 chr5 180915260 + 14609730 14610026 AluYd8 298 - 2 298 93004 296 chain 4218 chr5 180915260 + 14634168 14634216 L1PA8A 6298 + 6192 6240 204314 48 chain 26595 chr5 180915260 + 14638046 14638343 AluSp 311 - 4 301 97680 297 chain 28473 chr5 180915260 + 14655838 14656316 MLT2A2 560 - 0 560 91295 147 2 111 84 55 22 16 1 0 8 15 26 67 4 0 79 chain 9205 chr5 180915260 + 14657392 14657501 L1PA8 5853 + 5745 5853 164531 15 1 0 93 chain 30103 chr5 180915260 + 14674884 14675358 HSMAR2 1300 - 55 1284 84484 49 5 7 16 8 4 44 3 0 49 4 5 80 12 771 149 2 0 9 0 2 44 chain 8936 chr5 180915260 + 14682476 14682604 Tigger1 2417 + 2111 2238 165945 103 11 10 14 chain 37056 chr5 180915260 + 14734184 14734624 LTR10F 562 + 0 554 73447 116 0 115 63 1 0 260 chain 6067 chr5 180915260 + 14771393 14771467 LTR32 486 + 0 74 184679 74 chain 14661 chr5 180915260 + 14775076 14775561 MER44A 345 - 34 236 142385 79 291 2 38 0 2 13 0 4 64 chain 34644 chr5 180915260 + 14805096 14805691 MLT2A1 477 + 0 477 76700 142 0 1 26 0 4 222 150 32 10 4 0 21 1 0 19 chain 69962 chr5 180915260 + 14808707 14809457 L1HS 6032 + 5283 6032 48406 493 1 0 256 chain 230757 chr5 180915260 + 14835787 14838381 L1PA5 6144 + 3543 6143 17268 139 1 0 1414 4 0 640 0 11 396 chain 10646 chr5 180915260 + 14838382 14838505 L1PA4 6152 + 6029 6152 157615 123 chain 50172 chr5 180915260 + 14848244 14848970 LTR17 781 + 0 709 58887 57 1 0 69 13 1 29 1 0 83 26 28 60 1 0 52 11 14 104 2 3 33 0 1 76 9 0 99 chain 13506 chr5 180915260 + 14849060 14849222 LTR17 781 - 620 781 146343 102 1 0 59 chain 25390 chr5 180915260 + 14867663 14867931 AluYb8 318 - 14 282 102738 268 chain 22702 chr5 180915260 + 14878850 14879193 MER1A 529 + 177 529 117062 201 6 11 40 38 42 58 chain 27534 chr5 180915260 + 14883469 14883825 THE1B 368 + 0 368 94558 44 0 15 110 1 0 23 2 0 176 chain 20368 chr5 180915260 + 14897427 14898008 LTR9 672 - 386 672 126003 33 1 6 164 0 1 17 306 5 60 chain 38351 chr5 180915260 + 14899371 14899829 L1PA7 6471 - 1 456 71645 251 3 0 204 chain 23320 chr5 180915260 + 14902179 14902459 AluSg7 307 - 14 296 114097 166 3 5 111 chain 5476 chr5 180915260 + 14910666 14910737 MADE1 96 - 1 87 190248 36 0 15 35 chain 25667 chr5 180915260 + 14913884 14914206 AluSp 311 - 3 311 101415 18 14 0 290 chain 7031 chr5 180915260 + 14929122 14929263 MER21A 919 + 25 165 177249 24 1 14 34 7 10 13 4 0 35 13 0 10 chain 23875 chr5 180915260 + 14932765 14933054 AluSg7 307 - 6 296 111060 174 0 1 115 chain 3343 chr5 180915260 + 14948735 14948773 L1ME3A 1206 - 525 563 218183 38 chain 11214 chr5 180915260 + 14990147 14990425 MER31B 477 + 0 267 155375 76 25 22 32 20 37 14 61 36 50 chain 120116 chr5 180915260 + 14993087 14994478 LTR12C 1709 - 0 1709 31021 82 1 0 69 1 0 96 0 1 233 0 4 106 3 319 269 2 0 42 0 1 487 chain 41074 chr5 180915260 + 15024549 15025062 L1PA8 5853 - 0 506 67805 92 2 1 19 2 1 51 1 0 10 1 0 71 2 0 44 1 0 217 chain 29691 chr5 180915260 + 15046749 15047279 MLT2A2 560 + 0 560 85864 181 2 0 113 6 0 7 8 123 34 0 5 17 107 25 55 chain 23446 chr5 180915260 + 15058222 15058509 MLT2A1 477 + 7 295 113401 162 4 1 11 0 1 22 0 3 88 chain 463960 chr5 180915260 + 15058523 15064116 HERVL-int 5654 + 12 5646 8259 92 2 1 60 0 1 82 0 1 597 1 2 273 1 13 524 0 4 275 0 1 169 0 1 646 4 0 130 0 2 35 1 4 35 15 20 891 0 1 91 1 0 205 0 1 75 9 11 643 0 6 47 7 8 20 0 3 212 0 1 29 0 1 421 chain 32800 chr5 180915260 + 15064124 15064572 MLT2A1 477 + 0 477 79527 169 12 10 24 0 1 178 28 58 37 chain 11048 chr5 180915260 + 15095670 15095960 L1MB3 1562 - 107 369 156023 17 2 0 5 75 48 34 1 0 73 5 3 22 10 11 21 3 7 13 1 0 8 chain 95586 chr5 180915260 + 15095999 15097228 LTR12C 1709 - 0 1709 37935 91 0 131 60 1 139 60 0 4 91 0 129 156 0 118 256 47 7 467 chain 117876 chr5 180915260 + 15098047 15099388 L1PA6 6164 - 8 1345 31757 280 4 0 1057 chain 190393 chr5 180915260 + 15099388 15101559 L1PA6 6164 + 2639 4815 20006 557 0 1 1070 0 1 94 0 4 283 1 0 166 chain 27135 chr5 180915260 + 15109193 15109532 PRIMA4_LTR 623 + 0 340 95815 58 0 6 124 4 0 144 1 0 8 chain 8869 chr5 180915260 + 15110912 15111026 U8 134 - 19 133 166287 114 chain 27690 chr5 180915260 + 15114389 15114847 MLT2A2 560 - 0 560 94080 135 0 46 9 12 75 76 62 59 81 4 0 79 chain 4808 chr5 180915260 + 15145714 15145771 L1MA5A 2387 + 669 726 197262 57 chain 6477 chr5 180915260 + 15158788 15158860 L1P3 4156 - 1359 1431 181412 72 chain 5522 chr5 180915260 + 15171819 15171993 MLT2C2 476 + 298 476 189822 37 92 96 45 chain 38248 chr5 180915260 + 15192714 15193137 L1PA2 6032 - 0 423 71776 423 chain 36531 chr5 180915260 + 15196767 15197234 MER41A 554 - 85 554 74201 218 9 10 52 3 1 117 0 3 68 chain 132752 chr5 180915260 + 15197246 15199046 MER41-int 2638 - 5 1818 27469 250 8 7 135 13 15 82 0 4 237 0 1 135 1 0 4 0 1 188 1 0 193 6 1 53 0 1 124 18 23 116 34 37 12 5 6 10 0 3 175 chain 13089 chr5 180915260 + 15212747 15213075 L1PB1 5432 + 5115 5418 147886 23 1 0 6 1 0 12 2 0 3 2 0 9 2 0 41 15 16 56 1 0 15 3 0 7 68 57 10 1 0 22 1 0 12 1 0 14 chain 26827 chr5 180915260 + 15251526 15251875 L1PB1 5432 - 956 1303 96344 228 1 0 44 0 1 4 1 0 35 1 0 35 chain 60538 chr5 180915260 + 15251875 15252827 L1PB1 5432 + 4471 5395 52556 155 3 0 68 0 3 105 1 4 189 1 2 106 1 0 9 3 2 24 1 0 7 2 1 10 2 0 3 2 0 8 3 1 52 18 16 45 1 0 8 31 19 19 1 0 4 2 0 15 2 0 20 5 4 21 1 0 4 chain 541483 chr5 180915260 + 15271520 15277537 L1PA3long 6157 + 10 6157 2593 142 0 1 400 1 0 223 0 128 36 0 4 2272 0 1 1143 0 4 1639 7 0 154 chain 554486 chr5 180915260 + 15292041 15298198 L1PA3long 6157 + 0 6146 885 976 2 1 1428 9 0 3293 1 0 448 chain 26112 chr5 180915260 + 15301846 15302142 AluSp 311 + 6 302 99565 296 chain 55022 chr5 180915260 + 15314155 15315060 L1PB1 5432 - 33 921 55695 7 1 0 22 1 0 24 26 23 18 16 5 4 1 0 15 1 0 41 4 3 15 3 2 50 30 23 13 2 1 19 3 0 5 10 11 29 0 8 67 0 1 62 0 3 75 2 1 10 0 1 42 1 2 286 chain 89869 chr5 180915260 + 15315440 15316792 L1PB 1623 + 198 1453 39692 6 5 0 35 0 1 32 1 0 24 0 3 47 103 25 24 2 1 15 1 0 74 1 0 97 0 1 266 1 0 5 14 15 370 1 4 61 18 1 141 1 0 7 chain 27772 chr5 180915260 + 15332516 15332891 L1PA16 3655 - 134 514 93794 61 0 1 18 0 3 108 0 2 49 0 1 73 6 5 48 1 0 11 chain 507870 chr5 180915260 + 15356207 15362368 L1PA6 6164 + 0 6162 6337 185 24 25 71 8 9 277 1 0 242 34 0 386 0 1 251 0 9 547 1 2 30 1 0 68 6 9 958 1 0 31 0 1 81 1 0 6 0 1 115 0 1 435 1 0 873 0 8 27 1 0 544 0 3 31 0 8 76 0 4 88 0 1 431 0 1 279 0 1 40 4 0 6 chain 2820 chr5 180915260 + 15379377 15379407 L1PB1 5432 - 222 252 228459 30 chain 10107 chr5 180915260 + 15379417 15379621 L1PB1 5432 + 5236 5421 160060 45 1 0 14 1 0 4 1 0 4 18 9 12 27 22 46 1 0 12 1 0 17 chain 23775 chr5 180915260 + 15389884 15390161 AluSp 311 - 25 302 111625 277 chain 526696 chr5 180915260 + 15396241 15402111 L1PA3long 6157 + 6 6157 4528 99 0 3 112 2 1 1288 1 3 248 0 1 199 0 277 89 1 0 3831 chain 38788 chr5 180915260 + 15404771 15405191 L1PA2 6032 - 1 421 71029 420 chain 6926 chr5 180915260 + 15405191 15405268 L1PA2 6032 + 5520 5597 176089 77 chain 5545 chr5 180915260 + 15410246 15410316 MER3 215 - 10 80 189608 70 chain 169171 chr5 180915260 + 15412761 15415589 L1PB1 5432 + 3029 5424 22155 696 2 0 128 9 5 50 0 1 117 15 4 175 7 9 93 1 0 72 1 0 5 3 4 97 12 13 10 0 7 99 19 16 83 0 1 95 3 6 213 0 1 54 476 75 9 2 0 52 1 0 18 2 0 45 1 0 14 3 0 7 18 9 15 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 5425 chr5 180915260 + 15429429 15429522 L1PB1 5432 - 5 91 190748 5 2 0 18 1 0 11 2 1 22 1 0 24 2 0 5 chain 3466 chr5 180915260 + 15445234 15445271 MSTB 430 + 373 410 215868 37 chain 39683 chr5 180915260 + 15458215 15458765 MLT2A2 560 + 0 560 69780 153 28 27 28 1 0 184 0 1 4 5 16 147 chain 14735 chr5 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29693 chr5 180915260 + 15622403 15622757 L1PA5 6144 - 6 361 85856 140 16 17 198 chain 23382 chr5 180915260 + 15644286 15644592 AluSp 311 + 1 290 113748 131 24 7 151 chain 24016 chr5 180915260 + 15645317 15645793 MER4A1 472 + 0 472 110240 180 25 25 13 144 140 114 chain 35173 chr5 180915260 + 15658611 15659071 LTR2 463 - 0 463 75949 24 1 0 56 1 2 309 8 11 61 chain 88900 chr5 180915260 + 15662535 15663869 L1PA14 3548 - 67 1550 40044 16 1 0 10 6 0 39 2 1 13 11 9 18 1 3 29 5 1 12 1 0 109 1 0 84 1 0 6 2 0 13 8 4 109 10 7 45 2 0 11 10 7 246 1 0 112 0 1 13 0 1 27 0 175 131 6 7 115 8 9 100 chain 24201 chr5 180915260 + 15702846 15703260 LTR7 482 - 0 482 109203 49 12 14 53 5 1 73 0 31 38 1 2 40 51 0 17 7 96 68 chain 8327 chr5 180915260 + 15707306 15707403 MER41A 554 - 85 182 169238 97 chain 25529 chr5 180915260 + 15742838 15743210 THE1C 375 - 0 375 102103 25 1 0 153 14 13 48 16 21 115 chain 2938 chr5 180915260 + 15762110 15762141 MLT1F2 592 - 68 99 226384 31 chain 1572 chr5 180915260 + 15781954 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154693 140 chain 4035 chr5 180915260 + 16870565 16870630 MER5A1 166 + 78 145 206856 11 0 1 4 5 6 45 chain 27032 chr5 180915260 + 16872730 16873075 THE1A 353 - 0 353 96175 90 0 7 62 0 3 81 1 0 25 2 1 84 chain 87036 chr5 180915260 + 16873081 16874161 THE1A-int 1579 - 6 1091 40764 288 5 9 56 3 0 5 1 4 229 1 2 135 0 5 110 9 2 47 0 1 23 0 1 168 chain 8004 chr5 180915260 + 16874977 16875069 THE1A 353 - 43 135 171030 92 chain 16293 chr5 180915260 + 16875080 16875282 THE1A 353 - 152 353 137496 91 2 1 109 chain 9314 chr5 180915260 + 16909690 16909802 THE1B 368 - 256 368 163998 112 chain 10882 chr5 180915260 + 16911496 16912288 MER30 238 + 41 235 156652 64 623 30 13 10 5 82 chain 3723 chr5 180915260 + 16938171 16938213 L1MC2 1988 + 1871 1913 211586 42 chain 4109 chr5 180915260 + 16940904 16941083 L1MA3 4352 + 4134 4299 205785 32 0 1 16 105 92 7 1 0 6 1 0 11 chain 3201 chr5 180915260 + 16949655 16949810 MER58A 224 + 0 163 220930 16 103 111 36 chain 8160 chr5 180915260 + 16950741 16951209 MSTA 426 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7 6 10 2 0 20 7 2 24 9 6 20 chain 101834 chr5 180915260 + 17031705 17033065 LTR12C 1709 - 0 1709 36304 84 1 0 67 1 0 156 1 0 11 9 8 41 0 1 4 3 1 108 11 4 112 1 0 138 0 279 90 0 1 9 0 46 83 0 1 4 9 1 79 0 43 338 chain 12240 chr5 180915260 + 17034432 17034613 THE1D 372 + 191 372 151254 19 13 14 116 1 0 32 chain 6854 chr5 180915260 + 17051368 17051460 L1MA3 4352 - 95 187 178545 69 0 1 7 1 0 15 chain 16720 chr5 180915260 + 17062768 17063067 LTR12C 1709 + 930 1193 136343 63 0 1 118 41 8 13 30 26 34 chain 1744 chr5 180915260 + 17063003 17063033 LTR12C 1709 + 885 915 147691 30 chain 36742 chr5 180915260 + 17065990 17066491 LTR7 482 - 0 482 73891 185 0 31 7 0 1 108 51 0 150 chain 51210 chr5 180915260 + 17068383 17069125 MER4E1 777 + 0 777 58182 54 1 5 16 0 1 256 1 20 81 0 1 42 0 2 64 1 9 35 9 0 67 18 14 33 23 36 41 chain 23148 chr5 180915260 + 17072537 17072832 AluSc8 310 + 3 296 114900 129 0 3 102 4 3 38 0 2 10 6 0 6 chain 35874 chr5 180915260 + 17083391 17083806 LTR12C 1709 + 3 429 75037 211 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184 chain 28218 chr5 180915260 + 20334237 20334545 AluYf4 310 - 6 310 92242 172 4 0 132 chain 31399 chr5 180915260 + 20336863 20337278 LTR77 607 + 121 538 81818 385 9 11 21 chain 40321 chr5 180915260 + 20337303 20337914 THE1B-int 1605 - 990 1605 68853 10 1 0 30 2 5 23 1 2 41 1 0 43 41 45 39 19 16 312 0 1 48 chain 143348 chr5 180915260 + 20341748 20343588 HERVL-int 5654 + 1 1848 25589 23 4 5 157 3 1 506 11 12 153 8 13 92 1 6 241 0 1 302 5 0 49 0 1 285 chain 206715 chr5 180915260 + 20387271 20389653 L1PA4 6152 - 1593 3997 18738 70 0 3 167 1 0 34 0 1 345 0 1 652 1 0 344 0 20 86 3 0 72 0 1 4 1 0 570 1 2 9 0 1 22 chain 137091 chr5 180915260 + 20389653 20391245 L1PA4 6152 + 4546 6143 26624 807 6 7 201 21 22 322 0 3 235 chain 17621 chr5 180915260 + 20393687 20393892 L1PB3 3668 + 1906 2111 133932 205 chain 6849 chr5 180915260 + 20398679 20399162 L1PA8 5853 + 5741 5853 178587 21 0 13 27 384 0 51 chain 136570 chr5 180915260 + 20405143 20406695 L1PA5 6144 + 4581 6143 26728 47 5 4 662 0 5 685 0 6 153 chain 101853 chr5 180915260 + 20412925 20414120 L1PA6 6164 - 3 1197 36297 7 3 0 65 0 1 111 0 1 1009 chain 62248 chr5 180915260 + 20428050 20428832 L1PA8 5853 - 0 777 51779 93 1 0 19 2 1 50 1 0 11 1 0 71 3 1 43 1 0 158 0 1 165 0 1 163 chain 28117 chr5 180915260 + 20443036 20443340 AluYa5 310 + 0 303 92583 132 1 0 171 chain 30814 chr5 180915260 + 20448019 20448393 L1PA5 6144 - 6 383 82843 187 17 20 170 chain 7060 chr5 180915260 + 20493539 20493627 MER89 557 - 0 88 177033 88 chain 3632 chr5 180915260 + 20499760 20499805 MER110 477 + 407 452 213118 45 chain 34929 chr5 180915260 + 20519339 20519739 L1PA4 6152 + 5748 6151 76297 5 0 3 395 chain 22059 chr5 180915260 + 20586424 20586769 L1PA8 5853 + 5506 5843 119971 15 1 0 39 1 0 50 2 0 54 4 5 10 2 1 10 8 6 42 4 3 19 2 1 82 chain 32245 chr5 180915260 + 20595488 20595865 LTR22 571 + 158 535 80451 377 chain 4597 chr5 180915260 + 20613088 20613484 LTR12 884 - 175 722 199661 39 323 474 34 chain 50510 chr5 180915260 + 20622941 20623507 L1PA3long 6157 + 5589 6157 58644 140 0 2 426 chain 20904 chr5 180915260 + 20631796 20632080 L1PA7 6471 - 5 291 124261 7 2 0 11 0 3 5 0 2 36 8 8 210 1 0 4 chain 162796 chr5 180915260 + 20644388 20646118 L1HS 6032 - 0 1730 22963 1730 chain 93720 chr5 180915260 + 20646118 20647115 L1HS 6032 + 3268 4265 38349 997 chain 123847 chr5 180915260 + 20724506 20726049 L1PA6 6164 - 2 1548 29752 146 7 0 7 9 16 60 0 2 222 0 4 125 0 1 61 0 5 237 0 15 52 2 0 495 23 1 97 chain 83148 chr5 180915260 + 20726054 20727014 L1PA6 6164 + 3511 4470 42275 180 3 0 213 0 2 79 1 0 220 0 1 264 chain 6105 chr5 180915260 + 20732221 20732294 L1MA7 2200 - 256 329 184378 73 chain 27216 chr5 180915260 + 20758619 20758937 L1PA5 6144 - 0 332 95539 44 0 1 102 2 3 35 0 12 135 chain 70343 chr5 180915260 + 20775163 20776002 L1PA7 6471 - 5 846 48246 766 0 2 73 chain 25007 chr5 180915260 + 20794363 20794699 THE1B 368 + 0 348 104748 44 0 15 110 1 0 25 2 0 73 0 1 26 1 0 54 chain 26230 chr5 180915260 + 20801220 20801547 THE1A 353 + 3 330 99090 88 0 1 17 2 1 220 chain 8311 chr5 180915260 + 20812570 20812663 L1PA7 6471 - 1 94 169328 93 chain 310246 chr5 180915260 + 20814458 20818503 L1P3 4156 + 15 4096 12992 237 24 23 10 0 2 35 1 0 6 3 0 8 0 3 25 6 7 38 8 6 244 0 2 45 16 17 475 12 32 6 0 1 201 1 7 86 6 1 88 7 9 120 3 1 105 7 8 184 1 5 60 0 1 82 5 6 201 1 0 232 16 0 72 0 3 9 3 21 761 1 0 236 0 1 216 0 2 43 2 1 97 chain 312673 chr5 180915260 + 20821026 20825030 HERVL-int 5654 - 1610 5641 12906 432 11 10 506 6 7 408 9 8 167 4 7 179 4 9 41 0 1 174 6 15 681 0 1 231 0 6 183 15 20 197 4 5 27 6 5 60 6 1 348 0 4 61 1 0 191 13 13 33 chain 17723 chr5 180915260 + 20829720 20829920 L1P3 4156 + 2878 3079 133638 145 0 1 55 chain 16370 chr5 180915260 + 20877452 20877818 L1PA15 4387 + 4011 4355 137282 20 5 6 8 1 0 45 5 0 14 1 0 26 1 0 15 44 43 20 4 0 9 1 0 48 8 5 44 3 1 11 7 3 26 chain 21663 chr5 180915260 + 20885193 20885504 L1PREC2 3366 - 516 824 121533 43 9 8 36 10 9 4 1 0 208 chain 26892 chr5 180915260 + 20887921 20888333 MSTA 426 - 1 426 96655 79 0 7 88 38 45 77 2 0 24 7 8 97 chain 24064 chr5 180915260 + 20908870 20909157 AluYc 301 + 10 299 109961 110 0 2 177 chain 5945 chr5 180915260 + 20926756 20926831 L1MA5 2750 - 495 571 185724 36 0 1 39 chain 140929 chr5 180915260 + 20986284 20988117 L1PA8 5853 - 0 1853 25998 84 95 91 70 5 3 43 1 0 46 0 1 437 0 1 62 0 6 7 1 0 69 1 0 213 0 12 368 3 0 53 1 0 22 2 11 193 0 4 57 chain 119349 chr5 180915260 + 20988117 20989674 L1PA8 5853 + 2414 3987 31282 455 0 2 5 2 0 6 0 3 54 13 17 431 0 1 264 7 11 90 7 8 111 1 2 106 0 2 5 chain 6789 chr5 180915260 + 21016078 21016196 MER66B 489 - 103 223 179042 25 21 24 49 1 0 22 chain 3605 chr5 180915260 + 21023460 21023505 L1M3c 1411 + 723 768 213559 45 chain 41086 chr5 180915260 + 21044685 21045222 LTR12_ 688 - 0 688 67785 119 1 9 15 0 103 135 1 0 4 0 1 207 0 41 29 1 0 25 chain 95127 chr5 180915260 + 21046232 21047303 L1PA4 6152 + 5076 6152 38054 710 1 0 252 0 1 102 0 5 6 chain 2856 chr5 180915260 + 21070244 21070274 MER44C 733 - 43 73 227754 30 chain 3111 chr5 180915260 + 21082339 21082372 LTR12E 1234 + 667 700 222732 33 chain 37975 chr5 180915260 + 21083316 21083847 LTR12 884 + 0 884 72167 59 38 0 128 0 157 32 3 1 184 0 236 87 chain 24787 chr5 180915260 + 21093998 21094365 THE1D 372 + 1 367 105960 58 0 1 15 1 0 25 9 7 83 3 5 24 6 6 115 1 0 27 chain 5876 chr5 180915260 + 21098972 21099041 L1P1 4361 - 1273 1342 186414 69 chain 124423 chr5 180915260 + 21105747 21107519 MER4-int 2692 - 244 2046 29563 162 6 9 29 0 1 60 4 0 36 20 23 20 1 3 36 0 1 55 2 0 63 0 1 27 6 7 24 2 0 136 1 3 179 0 1 104 2 3 31 5 4 23 1 17 216 1 3 17 2 1 22 1 0 29 1 0 229 4 8 99 0 4 45 2 3 32 1 0 36 chain 560106 chr5 180915260 + 21107521 21113552 L1PA2 6032 + 1 6032 349 6031 chain 7265 chr5 180915260 + 21125127 21125209 HERVL-int 5654 + 5572 5654 175690 82 chain 23341 chr5 180915260 + 21134355 21134695 THE1B 368 + 0 363 113974 44 0 15 113 4 2 18 7 5 47 7 8 67 0 10 18 0 1 15 chain 22234 chr5 180915260 + 21164446 21164767 THE1D 372 - 0 323 119193 147 1 0 25 14 16 98 3 7 5 3 0 25 chain 49589 chr5 180915260 + 21165033 21165591 LTR6B 557 + 0 557 59331 50 1 0 160 1 0 149 0 1 197 chain 50669 chr5 180915260 + 21167144 21167742 L1PA7 6471 + 5874 6469 58522 584 3 0 11 chain 28680 chr5 180915260 + 21169892 21170258 MLT2A1 477 - 102 469 90409 93 0 1 77 0 1 20 0 1 12 4 1 57 0 1 103 chain 476872 chr5 180915260 + 21225498 21231516 L1PA7 6471 + 262 6470 7834 67 11 181 242 2 1 850 0 1 396 0 2 20 0 1 35 6 5 569 14 0 74 0 4 369 0 1 404 7 2 161 0 1 6 0 1 549 1 2 15 0 4 337 5 0 7 1 6 374 1 0 140 1 2 341 5 20 171 0 6 576 0 3 206 0 1 55 chain 61025 chr5 180915260 + 21251143 21252215 MER11B 1079 + 0 1064 52317 457 64 51 15 0 1 10 10 11 31 96 97 31 1 8 8 1 0 18 69 63 16 8 9 53 0 1 40 1 2 127 2 1 14 chain 8477 chr5 180915260 + 21252792 21253154 MLT1B 390 + 23 382 168419 24 1 2 5 1 0 15 226 224 24 1 0 65 chain 49375 chr5 180915260 + 21281130 21281727 L1PA7 6471 + 5710 6307 59465 597 chain 8823 chr5 180915260 + 21281732 21281865 L1PA7 6471 + 6344 6465 166537 110 12 0 11 chain 25536 chr5 180915260 + 21295753 21296047 L1PA5 6144 - 6 300 102076 294 chain 22311 chr5 180915260 + 21296055 21296310 L1PA5 6144 + 5599 5853 118870 190 1 0 64 chain 25876 chr5 180915260 + 21308338 21308780 L1PA15 4387 + 3898 4326 100548 35 1 0 167 6 5 15 41 40 25 1 0 22 4 0 10 1 0 50 6 3 44 3 1 11 chain 27937 chr5 180915260 + 21312297 21312865 L1PB1 5432 - 28 510 93213 13 1 0 21 1 0 24 2 0 15 7 4 19 24 12 15 1 0 45 1 0 15 2 1 53 2 0 8 5 1 11 1 0 9 1 0 24 3 0 6 81 29 6 4 0 115 1 4 32 chain 114595 chr5 180915260 + 21315908 21317425 L1PA8A 6298 - 14 1518 32923 399 25 23 289 1 2 81 2 1 121 18 1 41 0 1 59 3 0 160 5 7 21 0 1 57 0 1 90 1 5 144 chain 28429 chr5 180915260 + 21338250 21338545 AluYa5 310 - 15 310 91469 295 chain 4326 chr5 180915260 + 21342125 21342172 LTR12E 1234 + 642 689 202883 47 chain 204717 chr5 180915260 + 21357347 21359732 L1PA6 6164 + 3754 6162 18875 925 1 0 205 0 1 43 0 9 44 0 1 337 0 4 171 0 4 56 0 3 594 0 2 9 chain 117013 chr5 180915260 + 21366597 21367910 L1PA3long 6157 - 749 2063 32119 367 1 2 945 chain 62239 chr5 180915260 + 21367910 21368589 L1PA3long 6157 + 5428 6107 51713 679 chain 104939 chr5 180915260 + 21375208 21376369 L1PA3long 6157 - 429 1590 35515 1161 chain 24955 chr5 180915260 + 21376369 21376644 L1PA3long 6157 + 5725 6000 105034 275 chain 12980 chr5 180915260 + 21376644 21376787 L1PA3long 6157 + 6001 6144 148314 143 chain 36540 chr5 180915260 + 21398130 21398611 MLT2A2 560 + 4 502 74183 54 0 1 29 0 3 308 3 14 30 7 8 21 0 1 29 chain 102918 chr5 180915260 + 21407974 21409383 L1PA8 5853 + 4426 5815 36019 56 10 0 13 1 5 498 20 11 114 23 24 133 0 1 280 12 11 36 2 0 74 8 6 56 1 0 16 2 1 54 chain 3548 chr5 180915260 + 21421976 21422017 MLT1A 405 - 65 106 214575 41 chain 20887 chr5 180915260 + 21430733 21431351 L1P3 4156 - 323 580 124329 121 361 0 136 chain 35824 chr5 180915260 + 21431401 21431880 L1PA8 5853 + 5262 5735 75100 302 10 9 27 1 0 8 2 0 69 24 22 36 chain 8034 chr5 180915260 + 21431893 21432000 L1PA8 5853 + 5747 5853 170840 16 1 0 90 chain 62205 chr5 180915260 + 21434923 21435644 L1PA5 6144 - 4 851 51801 328 1 2 222 0 124 55 0 1 115 chain 12314 chr5 180915260 + 21435644 21435783 L1PA5 6144 + 5149 5288 150964 139 chain 69716 chr5 180915260 + 21445598 21446498 L1PA7 6471 - 1 899 48515 13 1 0 170 16 11 189 0 1 76 0 1 254 1 3 41 1 2 88 1 0 49 chain 38147 chr5 180915260 + 21467821 21468237 L1HS 6032 + 5616 6030 71915 245 1 0 157 1 0 12 chain 39892 chr5 180915260 + 21470801 21471366 MLT2A2 560 + 0 560 69469 194 1 4 94 21 0 97 0 1 16 8 19 65 1 2 68 chain 7993 chr5 180915260 + 21485226 21485416 THE1B 368 - 169 366 171101 18 13 12 52 11 12 10 30 40 6 3 0 47 chain 26549 chr5 180915260 + 21501354 21501641 L1PA2 6032 - 16 303 97842 287 chain 3954 chr5 180915260 + 21504506 21504558 MLT2D 439 - 297 349 208082 52 chain 23072 chr5 180915260 + 21516659 21517037 THE1C 375 - 0 375 115288 58 0 1 5 42 41 72 7 1 10 8 11 29 0 1 29 1 0 117 chain 20074 chr5 180915260 + 21550687 21550934 L1PA6 6164 + 5914 6162 126901 76 3 4 168 chain 48529 chr5 180915260 + 21554524 21555207 LTR76 689 - 7 682 60087 18 2 0 13 5 4 7 2 0 99 8 9 12 6 0 39 0 6 78 1 0 8 2 0 27 0 1 234 1 0 78 1 0 42 chain 70767 chr5 180915260 + 21579038 21579824 L1PA3long 6157 - 0 803 47620 350 0 17 436 chain 110207 chr5 180915260 + 21579824 21581037 L1PA3long 6157 + 4130 5342 34155 5 1 0 1207 chain 17459 chr5 180915260 + 21592847 21593197 THE1B 368 - 0 368 134359 49 14 8 23 80 90 30 1 0 104 5 20 44 chain 12195 chr5 180915260 + 21593205 21593444 MSTA 426 + 159 414 151439 32 15 19 17 39 37 34 7 21 95 chain 28231 chr5 180915260 + 21604836 21605208 THE1B 368 - 0 368 92189 168 4 0 26 3 2 148 0 1 23 chain 2942 chr5 180915260 + 21612014 21612152 L1PB 1623 + 117 254 127414 71 5 4 62 chain 46523 chr5 180915260 + 21612156 21612765 PABL_A 660 - 0 620 61574 82 0 1 223 0 13 107 1 2 142 9 5 45 chain 3049 chr5 180915260 + 21612805 21612948 L1PB 1623 + 254 391 127414 15 1 0 87 5 0 35 chain 9226 chr5 180915260 + 21613951 21614051 L1PA4 6152 + 5796 5896 164418 100 chain 55845 chr5 180915260 + 21615102 21615858 LTR17 781 - 0 781 55219 44 5 28 86 0 1 191 4 3 4 0 1 26 0 2 40 18 17 10 2 1 260 0 1 66 chain 31305 chr5 180915260 + 21617207 21617572 L1PA7 6471 + 6093 6458 81985 365 chain 250835 chr5 180915260 + 21624674 21627790 L1PA7 6471 - 6 3205 16191 144 1 0 310 0 2 5 7 5 235 3 1 63 0 2 77 1 4 263 1 0 237 0 18 118 1 0 170 1 0 4 0 7 46 1 2 23 6 50 70 0 2 113 7 8 105 2 6 53 0 3 391 1 0 10 0 4 307 0 1 340 chain 4012 chr5 180915260 + 21629357 21629403 MSTA 426 - 380 426 207204 46 chain 5343 chr5 180915260 + 21643253 21643346 MLT1A1 405 - 46 137 191621 25 11 10 44 1 0 12 chain 29196 chr5 180915260 + 21651580 21651890 AluYa5 310 - 0 310 88069 310 chain 2983 chr5 180915260 + 21657381 21657421 MLT1H1 527 + 265 305 225424 10 1 0 18 0 1 11 chain 6395 chr5 180915260 + 21657952 21658020 L1PA2 6032 - 379 447 182066 68 chain 34932 chr5 180915260 + 21658034 21658412 L1PA2 6032 + 5652 6030 76290 378 chain 24429 chr5 180915260 + 21681191 21681478 AluSc5 308 - 8 297 107921 33 0 2 254 chain 27506 chr5 180915260 + 21688499 21688845 THE1A 353 + 0 347 94633 26 0 1 82 2 1 190 0 1 46 chain 78699 chr5 180915260 + 21696245 21697265 L1PA8 5853 - 819 1845 44188 24 2 0 137 0 1 65 29 34 473 0 1 4 1 0 35 0 1 228 0 1 22 chain 39820 chr5 180915260 + 21771604 21772261 MER4D1 891 - 243 891 69596 217 1 0 27 54 53 72 1 0 7 5 0 11 2 4 110 31 32 14 4 1 9 1 0 91 chain 143841 chr5 180915260 + 21840547 21842116 L1PA3long 6157 + 4578 6146 25509 312 1 0 1256 chain 35140 chr5 180915260 + 21867494 21867958 THE1B-int 1605 + 882 1585 76008 51 34 273 353 1 0 4 0 1 21 chain 19133 chr5 180915260 + 21867969 21868411 THE1B 368 + 0 348 129731 102 14 15 60 167 73 44 1 0 54 chain 6408 chr5 180915260 + 21868213 21868285 THE1B 368 + 250 321 181960 44 1 0 27 chain 9816 chr5 180915260 + 21870388 21870511 MLT2B3 573 + 69 192 161516 123 chain 10073 chr5 180915260 + 21888591 21888712 L1PA5 6144 + 6025 6142 160205 110 4 0 7 chain 20736 chr5 180915260 + 21920502 21920776 L1PA7 6471 + 6174 6454 124831 6 0 2 100 1 0 26 1 3 5 1 0 98 0 4 36 chain 25149 chr5 180915260 + 21960062 21960392 L1PREC2 3366 + 475 814 104005 107 0 3 9 1 7 213 chain 38901 chr5 180915260 + 21994805 21995347 LTR12_ 688 + 0 688 70865 28 8 10 106 0 24 145 0 13 58 0 103 132 13 17 52 chain 4309 chr5 180915260 + 22020903 22020957 MLT1A 405 - 326 380 203108 54 chain 112812 chr5 180915260 + 22027030 22028273 L1PA3long 6157 - 2107 3351 33438 105 0 1 1138 chain 190107 chr5 180915260 + 22028273 22030383 L1PA3long 6157 + 4048 6157 20035 1960 1 0 149 chain 25851 chr5 180915260 + 22060251 22060593 L1PA8 5853 + 5518 5853 100649 45 1 0 45 2 0 70 2 1 8 2 1 56 1 0 16 1 0 93 chain 116589 chr5 180915260 + 22074239 22075572 L1PA4 6152 + 4807 6143 32264 491 1 5 654 6 5 181 chain 283929 chr5 180915260 + 22095172 22098989 HERVH-int 3825 + 0 3825 14419 160 0 4 169 1 0 139 13 15 48 1 0 35 1 0 7 4 3 24 55 10 4 1 0 13 45 0 7 63 0 5 0 20 27 21 0 9 64 0 81 12 15 25 6 16 297 0 4 295 22 13 127 5 0 81 0 4 121 0 1 103 2 1 246 0 9 982 8 218 416 5 4 67 chain 16245 chr5 180915260 + 22108158 22108514 THE1B 368 + 0 368 137635 47 62 70 52 1 0 24 59 64 111 chain 50430 chr5 180915260 + 22113119 22113850 MER4E1 777 + 0 770 58689 16 2 0 6 12 15 81 0 1 132 1 0 44 6 5 47 1 16 34 0 10 50 6 7 26 7 8 39 7 16 186 0 3 28 chain 31570 chr5 180915260 + 22125215 22125633 L1PA8 5853 - 0 411 81531 92 2 1 16 2 1 51 1 0 12 1 0 72 3 1 45 1 0 120 chain 17903 chr5 180915260 + 22149876 22150089 AluSg7 307 + 53 267 133092 78 0 1 135 chain 56312 chr5 180915260 + 22164219 22164988 LTR17 781 - 9 781 54958 32 22 0 8 1 23 53 1 2 262 1 0 65 0 1 17 10 0 21 7 9 135 0 1 15 11 20 108 chain 29275 chr5 180915260 + 22191663 22191972 AluYa5 310 - 1 310 87668 309 chain 2821 chr5 180915260 + 22226377 22226429 MLT1E2 623 + 87 137 228451 22 11 9 19 chain 7937 chr5 180915260 + 22257921 22258017 MER85 139 - 43 139 171409 96 chain 65352 chr5 180915260 + 22262227 22262947 L1PA2 6032 - 1 724 50397 329 0 3 391 chain 26322 chr5 180915260 + 22262947 22263231 L1PA2 6032 + 5019 5303 98731 284 chain 13341 chr5 180915260 + 22275196 22275401 L1PA8 5853 + 5651 5853 146931 29 1 0 8 9 8 7 0 1 36 2 1 19 1 0 93 chain 76209 chr5 180915260 + 22279498 22280361 L1PA5 6144 - 12 874 45311 132 1 0 730 chain 226049 chr5 180915260 + 22280361 22283214 L1PA7 6471 + 3337 6173 17530 958 9 8 303 0 2 347 9 8 128 23 1 125 0 4 76 0 1 4 1 0 39 1 0 261 0 4 8 8 7 176 0 1 6 0 1 330 3 0 38 chain 27831 chr5 180915260 + 22287551 22287850 AluYk11 308 + 0 300 93584 140 0 1 159 chain 18673 chr5 180915260 + 22293113 22293521 LTR10B1 532 + 124 532 131024 21 75 0 14 75 150 223 chain 14295 chr5 180915260 + 22310086 22310260 L1PA7 6471 + 6287 6461 143576 174 chain 7861 chr5 180915260 + 22311885 22311977 LTR23 429 - 336 428 171931 92 chain 46041 chr5 180915260 + 22321262 22321765 L1PA2 6032 + 5526 6031 62001 7 0 1 37 0 1 459 chain 76674 chr5 180915260 + 22332538 22333590 L1PA8 5853 + 4809 5853 45134 200 2 0 555 1 0 35 0 1 8 2 0 70 2 1 9 1 0 50 5 4 18 1 0 21 19 19 53 chain 13371 chr5 180915260 + 22335290 22335459 THE1B 368 + 0 172 146814 14 2 0 26 0 5 127 chain 364003 chr5 180915260 + 22359065 22363181 L1PA5 6144 + 2006 6124 11260 1495 0 2 179 1 0 373 0 1 346 0 1 1628 1 0 93 chain 4297 chr5 180915260 + 22419203 22419268 L1P3 4156 - 20 82 203257 21 2 1 7 2 0 33 chain 40161 chr5 180915260 + 22420804 22421299 L1PA10 4194 - 99 595 69096 193 0 3 172 2 0 128 chain 69051 chr5 180915260 + 22421303 22422144 L1PA7 6471 - 5 847 48785 144 13 14 684 chain 25998 chr5 180915260 + 22436074 22436383 L1PA5 6144 + 5681 5989 100024 210 1 0 98 chain 13513 chr5 180915260 + 22436404 22436556 L1PA5 6144 + 5989 6141 146309 152 chain 59227 chr5 180915260 + 22508317 22509079 MER4E1 777 + 0 756 53268 17 1 2 517 21 14 206 chain 3462 chr5 180915260 + 22517712 22517750 MLT2C2 476 + 438 476 215974 38 chain 41550 chr5 180915260 + 22524930 22525405 L1PA4 6152 - 9 486 67222 104 0 1 52 7 8 312 chain 12935 chr5 180915260 + 22534334 22534635 L1PB1 5432 - 12 287 148482 16 1 0 13 8 7 14 1 0 17 31 26 30 12 1 15 7 6 39 1 0 15 2 1 61 6 2 12 chain 11452 chr5 180915260 + 22569260 22569648 MSTA 426 + 7 420 154491 37 213 238 29 6 6 103 chain 9110 chr5 180915260 + 22581559 22581669 THE1-int 844 - 389 499 165017 110 chain 5589 chr5 180915260 + 22581857 22581926 L1PBa 3878 - 2562 2631 189180 69 chain 32186 chr5 180915260 + 22585973 22586339 L1PA5 6144 + 5508 5874 80549 366 chain 23178 chr5 180915260 + 22586339 22586600 L1PA5 6144 + 5876 6137 114777 261 chain 20467 chr5 180915260 + 22606469 22606828 THE1D 372 + 0 372 125714 47 3 0 20 46 45 53 7 13 12 3 0 3 2 0 26 3 19 134 chain 21761 chr5 180915260 + 22607443 22607775 THE1A 353 - 20 353 121172 179 45 44 83 0 1 14 1 2 10 chain 3631 chr5 180915260 + 22614837 22614883 MER44B 551 - 9 55 213142 46 chain 249178 chr5 180915260 + 22622571 22625416 L1PA5 6144 + 3272 6135 16301 13 1 0 213 0 1 100 0 1 250 0 1 229 0 5 73 9 10 810 0 4 174 0 3 144 1 0 743 0 4 85 chain 37768 chr5 180915260 + 22638235 22638762 MLT2A2 560 - 0 543 72466 10 0 4 104 1 0 28 6 17 36 0 1 180 1 0 8 7 9 146 chain 21858 chr5 180915260 + 22674278 22674618 THE1B 368 + 2 368 120789 42 4 21 109 1 0 24 41 51 119 chain 82131 chr5 180915260 + 22674633 22675754 THE1B-int 1605 + 17 1600 42710 413 0 25 164 28 22 132 0 1 7 20 18 128 8 11 5 3 0 31 2 446 180 chain 42245 chr5 180915260 + 22694945 22695529 L1PA8 5853 - 0 573 66340 93 1 0 19 2 1 50 1 0 75 7 5 46 1 0 89 19 13 36 1 2 144 chain 77755 chr5 180915260 + 22720609 22721759 THE1D-int 1627 + 12 1621 44632 6 1 0 20 1 0 4 0 1 64 53 0 94 1 2 133 0 102 211 6 5 68 3 0 19 0 1 4 5 4 54 9 425 41 1 0 191 15 12 40 1 0 76 0 3 29 chain 26637 chr5 180915260 + 22775881 22776236 THE1A 353 + 0 353 97522 35 1 2 47 2 1 26 1 0 91 1 0 151 chain 28767 chr5 180915260 + 22796623 22796928 AluYa5 310 - 6 310 90035 178 1 0 126 chain 2721 chr5 180915260 + 22798611 22798644 Charlie1a 1436 + 1329 1362 229891 33 chain 94696 chr5 180915260 + 22805780 22807215 L1PA7 6471 - 12 1133 38166 665 317 0 170 0 3 283 chain 263565 chr5 180915260 + 22820558 22823497 L1PA4 6152 + 3201 6146 15504 66 0 1 18 0 1 1064 0 4 1791 chain 9991 chr5 180915260 + 22919125 22919258 L1P3 4156 - 17 147 160621 24 2 1 9 2 0 96 chain 120724 chr5 180915260 + 22919304 22920833 L1PA8A 6298 + 4741 6291 30784 15 1 2 67 1 0 664 2 1 72 0 1 19 4 8 16 0 1 245 0 18 135 0 2 266 11 7 11 chain 182831 chr5 180915260 + 22930082 22932353 HERV9-int 5642 + 3280 5598 20700 183 0 1 364 0 13 90 0 1 43 0 1 13 0 3 289 0 1 507 4 0 184 0 14 31 1 2 79 0 24 107 1 0 125 2 1 101 8 6 34 11 9 19 1 0 56 6 5 12 chain 5551 chr5 180915260 + 22939135 22939205 Looper 901 - 414 484 189559 70 chain 64765 chr5 180915260 + 22942641 22943362 L1PA3long 6157 - 0 720 50676 709 1 0 11 chain 23967 chr5 180915260 + 22975019 22975386 LTR7B 505 + 0 441 110532 108 0 10 41 4 5 22 33 9 27 1 89 51 1 0 79 chain 13812 chr5 180915260 + 22978924 22979201 L1PB1 5432 + 5170 5422 145211 50 2 1 16 1 0 45 1 0 19 25 11 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 7 6 5 18 chain 5069 chr5 180915260 + 22989188 22989264 MADE1 96 - 1 93 194435 30 1 17 45 chain 3192 chr5 180915260 + 22993830 22993891 L1M1 2793 - 883 932 221069 28 2 0 9 8 0 3 2 0 9 chain 7656 chr5 180915260 + 23001045 23001134 L1PA7 6471 + 6365 6454 173182 89 chain 18832 chr5 180915260 + 23046268 23046652 MSTA 426 + 17 405 130571 91 6 30 55 92 51 49 17 38 74 chain 10749 chr5 180915260 + 23058654 23058908 L1PB1 5432 - 10 239 157203 18 1 0 12 1 0 22 1 0 24 1 0 14 12 9 15 26 18 9 1 0 45 25 17 10 1 0 16 chain 19184 chr5 180915260 + 23091098 23091334 L1PA7 6471 + 6228 6467 129573 100 1 2 126 0 2 9 chain 10800 chr5 180915260 + 23115397 23115641 L1PB1 5432 + 5204 5423 156988 16 2 1 14 2 1 45 10 0 7 23 20 19 2 0 6 1 0 13 2 0 24 1 0 21 7 6 7 1 0 14 2 0 5 chain 454058 chr5 180915260 + 23140627 23146767 L1PA8A 6298 - 29 6168 8611 297 0 1 303 7 5 115 0 1 227 0 1 237 0 1 255 1 0 6 24 25 285 0 1 53 26 26 72 2 3 364 1 10 46 5 0 62 1 0 168 23 12 66 0 4 4 1 0 180 0 4 6 3 11 26 2 1 24 0 1 29 0 1 75 4 3 6 1 0 326 0 1 224 0 2 195 1 2 6 0 1 105 0 2 149 0 1 39 2 3 247 19 20 190 0 9 85 10 0 12 0 10 11 0 1 387 0 3 79 1 0 4 8 0 570 9 14 110 16 14 4 1 0 18 2 0 76 10 4 15 1 0 48 57 48 9 1 0 4 2 0 15 2 0 3 1 0 9 1 0 7 2 1 21 1 0 18 chain 22622 chr5 180915260 + 23169338 23169642 AluSc5 308 + 0 305 117478 38 29 30 237 chain 3812 chr5 180915260 + 23169650 23169698 MER34A1 583 + 462 514 210211 17 0 4 31 chain 496219 chr5 180915260 + 23186265 23192302 L1PA6 6164 + 0 6162 7057 275 5 25 111 2 1 494 0 4 371 0 1 619 0 1 422 1 3 528 3 131 193 5 0 6 8 5 125 1 0 388 1 0 201 0 2 601 4 0 7 0 4 155 0 1 32 3 2 85 25 0 107 1 2 251 1 2 39 0 1 267 21 22 105 0 2 335 0 1 91 1 2 136 5 0 6 chain 10164 chr5 180915260 + 23204429 23204610 Tigger2 2703 + 2345 2532 159781 20 9 0 13 4 13 70 13 19 52 chain 36392 chr5 180915260 + 23225447 23226006 LTR9B 643 + 0 583 74373 36 1 5 160 6 5 196 54 68 32 2 9 72 chain 11130 chr5 180915260 + 23253437 23253573 L1PA3long 6157 - 15 155 155701 105 6 10 25 chain 13556 chr5 180915260 + 23311376 23311668 THE1B 368 - 66 368 146151 62 65 71 52 42 46 71 chain 19504 chr5 180915260 + 23322375 23322670 L1PA15 4387 + 4014 4299 128647 90 1 0 26 1 0 57 1 0 11 11 7 12 1 0 50 10 8 24 chain 3863 chr5 180915260 + 23323115 23323161 MADE1 96 - 50 96 209405 46 chain 67284 chr5 180915260 + 23373182 23374030 L1PA7 6471 - 14 884 49528 312 9 8 99 1 29 74 0 3 62 9 0 170 0 2 77 1 0 34 chain 29355 chr5 180915260 + 23374546 23374855 AluYb8 318 - 9 318 87267 309 chain 33253 chr5 180915260 + 23381268 23381715 LTR7 482 + 0 469 78798 100 21 15 110 4 3 19 0 31 24 3 0 63 1 2 102 chain 20142 chr5 180915260 + 23382678 23382918 L1PA6 6164 + 5921 6162 126701 106 0 1 134 chain 35327 chr5 180915260 + 23420193 23420665 LTR2B 499 - 0 490 75763 182 1 0 8 3 4 18 0 1 157 9 28 36 1 0 51 1 0 5 chain 2911 chr5 180915260 + 23444107 23444145 THE1D 372 + 335 372 226857 5 1 0 32 chain 33926 chr5 180915260 + 23451717 23452150 MER4A1 472 - 0 472 77734 170 6 40 55 0 5 202 chain 40449 chr5 180915260 + 23464488 23464974 L1PA3long 6157 + 5656 6157 68664 343 12 5 15 7 29 109 chain 27035 chr5 180915260 + 23467986 23468435 LTR7B 505 - 19 505 96162 32 14 13 86 3 44 59 44 17 40 5 20 4 1 0 55 1 11 105 chain 4595 chr5 180915260 + 23507284 23507353 L1P4a 3072 + 35 105 199689 12 1 0 7 0 4 7 2 0 40 chain 23774 chr5 180915260 + 23516982 23517280 AluY 311 + 17 301 111628 112 14 0 172 chain 38321 chr5 180915260 + 23528644 23529155 LTR10D 510 - 0 510 71686 175 2 1 7 0 2 54 0 2 28 18 13 73 3 0 72 7 11 72 chain 5933 chr5 180915260 + 23530246 23530313 PABL_B 668 - 0 67 185851 67 chain 6714 chr5 180915260 + 23533180 23533261 L1P5 443 + 145 226 179574 81 chain 29106 chr5 180915260 + 23599393 23599771 L1PA8A 6298 - 11 442 88522 86 11 12 49 0 2 63 0 49 85 0 1 84 chain 25532 chr5 180915260 + 23599771 23600095 L1PA8A 6298 + 5276 5604 102092 213 2 6 109 chain 3812 chr5 180915260 + 23601070 23601136 MADE1 96 + 15 94 210197 14 0 16 18 7 4 27 chain 5193 chr5 180915260 + 23615854 23615919 MSTB 430 + 344 409 193112 65 chain 43267 chr5 180915260 + 23617355 23617920 LTR19B 566 - 1 566 65094 44 7 8 212 8 9 193 2 0 99 chain 23842 chr5 180915260 + 23626398 23626686 AluY 311 + 2 293 111234 186 0 3 102 chain 53456 chr5 180915260 + 23636689 23637289 L1PA4 6152 + 5543 6143 56717 600 chain 20217 chr5 180915260 + 23641959 23642311 THE1B 368 + 0 342 126480 12 3 1 34 0 1 63 11 12 28 53 44 98 1 0 49 chain 282123 chr5 180915260 + 23642397 23645865 L1PA6 6164 - 12 3776 14530 135 0 7 7 19 11 338 2 0 250 0 1 1595 0 396 188 0 1 33 0 1 4 1 2 72 0 1 49 0 1 274 103 0 398 chain 76849 chr5 180915260 + 23645940 23646880 L1P2 5180 + 1540 2475 45057 188 0 1 211 5 6 135 4 3 231 10 4 156 chain 30344 chr5 180915260 + 23657748 23658066 AluYb8 318 + 0 318 83793 318 chain 35839 chr5 180915260 + 23687883 23688368 HERVK14-int 1672 + 5 480 75078 25 1 0 11 5 0 47 1 0 49 4 3 124 0 1 35 6 5 33 2 0 142 chain 118695 chr5 180915260 + 23691051 23692441 LTR12C 1709 + 0 1709 31533 792 9 325 107 1 5 216 2 1 263 chain 40539 chr5 180915260 + 23732708 23733218 L1PA7 6471 - 2 516 68535 80 1 9 309 5 1 115 chain 40433 chr5 180915260 + 23734402 23734900 L1PA5 6144 - 0 502 68688 45 7 11 45 0 1 47 1 0 353 chain 101651 chr5 180915260 + 23734900 23736072 L1PA5 6144 + 4455 5632 36356 179 0 2 750 0 3 243 chain 21462 chr5 180915260 + 23741241 23741503 AluSc 308 + 30 292 122284 262 chain 2829 chr5 180915260 + 23753909 23753939 L1PA4 6152 - 16 46 228229 30 chain 11177 chr5 180915260 + 23763176 23763363 MER30 238 + 38 238 155530 56 17 32 59 10 8 45 chain 25373 chr5 180915260 + 23782400 23782774 THE1C 375 + 0 375 102818 18 2 0 88 24 24 15 0 1 28 5 8 58 1 0 135 chain 7646 chr5 180915260 + 23799412 23799517 THE1B 368 + 1 107 173254 46 5 6 54 chain 246879 chr5 180915260 + 23804749 23807944 HERVL-int 5654 + 0 4619 16403 124 0 2 427 0 1 305 7 12 35 2 23 21 1 11 191 0 1404 64 18 5 307 1 0 48 0 1 483 1 0 269 3 4 356 1 2 486 29 22 16 chain 36728 chr5 180915260 + 23808275 23808891 L1P3 4156 - 19 606 73916 21 1 0 9 2 0 11 3 1 21 0 2 198 102 76 178 1 0 6 0 1 63 chain 2844 chr5 180915260 + 23847923 23847955 Tigger1 2417 + 2284 2316 227957 32 chain 283187 chr5 180915260 + 23853460 23856998 L1PA7 6471 - 5 3543 14456 7 4 0 515 0 1 92 15 5 232 2 0 662 4 5 943 3 0 24 5 22 465 9 9 556 chain 46178 chr5 180915260 + 23857003 23857585 L1PA7 6471 + 2363 2930 61869 278 16 1 288 chain 134118 chr5 180915260 + 23865355 23867264 MER61-int 3695 + 0 1868 27179 26 8 12 9 1 0 145 39 0 80 1 0 54 18 34 4 0 1 27 0 1 17 16 2 52 16 3 54 5 6 115 1 0 41 0 1 150 0 1 11 14 19 184 4 0 375 0 1 120 6 7 316 chain 28158 chr5 180915260 + 23881835 23882130 AluYg6 310 - 15 310 92434 295 chain 117012 chr5 180915260 + 23892154 23893588 L1PA7 6471 - 109 1547 32120 659 1 0 82 2 0 36 0 1 146 0 6 409 4 5 69 1 0 25 chain 40260 chr5 180915260 + 23911554 23912095 L1PA7 6471 + 5953 6460 68929 34 0 3 159 29 0 286 15 7 18 chain 167982 chr5 180915260 + 23916499 23918366 L1PA4 6152 - 448 2313 22286 409 0 1 268 2 1 396 2 0 790 chain 37616 chr5 180915260 + 23918383 23918809 L1PA4 6152 + 5717 6146 72666 286 1 4 139 chain 28270 chr5 180915260 + 23924725 23925079 THE1A 353 - 0 353 92043 151 1 0 202 chain 114563 chr5 180915260 + 23925079 23926551 THE1A-int 1579 - 0 1579 32932 205 0 1 286 0 69 51 12 23 441 0 1 4 1 0 58 3 19 312 0 10 99 chain 49449 chr5 180915260 + 23927459 23928043 L1PA7 6471 - 11 597 59424 146 0 1 99 0 1 339 chain 113229 chr5 180915260 + 23942515 23944075 THE1A-int 1579 - 17 1579 33303 87 0 1 152 0 1 4 1 0 62 8 7 71 0 1 264 0 1 29 1 0 375 15 11 309 70 73 76 0 1 4 1 0 16 0 2 15 chain 111610 chr5 180915260 + 23951203 23952620 LTR12C 1709 + 0 1709 33774 219 22 1 6 0 1 454 0 159 231 0 47 106 0 4 212 0 1 22 36 9 4 1 0 14 4 2 27 0 131 59 chain 4643 chr5 180915260 + 23985679 23985789 L1MA7 2200 + 2013 2105 199142 24 24 13 35 9 2 18 chain 6626 chr5 180915260 + 23994623 23994702 HY3 101 - 12 91 180259 79 chain 18371 chr5 180915260 + 24030247 24030615 L1PB 1623 - 52 387 131875 18 51 28 9 1 0 14 30 22 26 2 1 7 1 0 44 0 4 93 3 0 69 chain 72231 chr5 180915260 + 24030985 24032056 MER11A 1151 + 3 1144 47366 52 0 99 76 1 0 64 4 0 38 0 2 54 2 1 54 0 1 84 6 0 10 0 7 81 0 1 56 3 4 146 25 57 12 14 0 18 50 1 60 6 7 111 1 2 43 chain 40458 chr5 180915260 + 24035586 24036080 L1PA7 6471 - 341 837 68652 28 0 1 280 0 1 186 chain 20968 chr5 180915260 + 24036080 24036382 L1PA7 6471 + 6167 6470 124040 130 34 33 77 0 1 43 0 1 18 chain 212892 chr5 180915260 + 24037339 24039874 L1PA6 6164 - 2 2628 18301 57 0 1 152 0 1 149 0 16 127 0 1 142 0 1 199 0 4 144 0 5 961 1 4 23 5 64 415 1 0 81 0 1 78 chain 13335 chr5 180915260 + 24069936 24070096 MLT2A2 560 - 392 560 146956 91 0 8 69 chain 48131 chr5 180915260 + 24072029 24072578 L1PA4 6152 - 0 556 60379 6 0 5 116 0 1 211 1 2 215 chain 27991 chr5 180915260 + 24083228 24083710 MLT2A1 477 + 0 477 93031 66 0 2 74 0 1 26 1 5 86 17 12 52 1 0 33 87 81 39 chain 17429 chr5 180915260 + 24095712 24096064 THE1B 368 - 0 368 134438 97 0 10 18 62 67 38 47 48 90 chain 40813 chr5 180915260 + 24114321 24114783 L1PA4 6152 - 13 475 68154 462 chain 271056 chr5 180915260 + 24124456 24127988 L1PA8A 6298 - 8 3530 15138 134 1 0 670 1 0 21 0 1 639 1 0 513 0 1 118 14 8 114 1 0 99 0 2 95 5 0 14 1 0 5 0 1 144 4 0 4 4 0 9 6 1 10 0 1 119 3 2 107 8 11 5 0 1 16 5 7 26 7 8 12 0 1 58 1 0 6 0 6 92 1 2 61 5 7 5 2 0 366 chain 12929 chr5 180915260 + 24141161 24141479 MER61A 341 + 9 341 148509 47 14 29 36 75 76 30 1 0 49 29 28 37 chain 46516 chr5 180915260 + 24148751 24149681 L1PB1 5432 - 15 795 61584 13 1 0 13 1 0 21 1 0 24 59 44 6 1 0 16 4 3 37 4 3 16 2 1 50 7 5 7 4 0 12 1 0 12 2 1 19 135 11 285 3 11 13 8 0 80 7 9 14 0 2 52 chain 4598 chr5 180915260 + 24179951 24180134 MER74C 455 + 154 341 199659 24 28 29 41 75 78 15 chain 131521 chr5 180915260 + 24185040 24186507 L1PA4 6152 - 1 1468 27740 1467 chain 125779 chr5 180915260 + 24186507 24188353 L1PA4 6152 + 3696 6143 29040 242 0 1 767 430 1030 407 chain 18405 chr5 180915260 + 24190752 24190972 L1PA5 6144 - 8 221 131760 135 7 0 78 chain 3920 chr5 180915260 + 24203490 24203539 MADE1 96 + 47 96 208548 49 chain 9026 chr5 180915260 + 24217082 24217328 L1MB1 2102 - 44 284 165462 20 1 0 7 28 24 32 0 2 33 3 1 22 64 63 36 chain 45611 chr5 180915260 + 24227503 24228022 L1PA3long 6157 + 5626 6142 62389 272 0 1 91 4 0 152 chain 31389 chr5 180915260 + 24228047 24228447 LTR3B 427 + 16 421 81839 161 6 0 123 0 3 25 1 7 34 1 0 4 0 2 23 0 1 22 chain 38517 chr5 180915260 + 24271617 24272136 MLT2A2 560 - 32 560 71414 19 10 5 91 0 11 149 0 1 95 2 0 136 4 8 13 chain 90353 chr5 180915260 + 24285214 24286282 L1PA5 6144 - 0 1071 39520 148 0 1 113 6 7 177 5 6 619 chain 69051 chr5 180915260 + 24296971 24297841 L1PA7 6471 - 5 875 48784 138 9 0 12 1 8 239 1 0 366 1 0 74 5 9 24 chain 217169 chr5 180915260 + 24305375 24308180 L1PA7 6471 - 1 2806 18045 4 1 0 223 4 5 625 1 0 7 0 4 789 6 14 135 6 0 29 0 1 199 0 1 28 0 1 181 0 1 263 3 8 115 17 1 60 17 18 18 0 1 74 chain 28945 chr5 180915260 + 24308180 24308515 LTR14A 344 - 0 344 89247 73 0 5 99 0 4 163 chain 58651 chr5 180915260 + 24310427 24311201 LTR12D 1347 + 403 1347 53604 133 1 32 15 8 7 101 1 19 276 0 97 108 0 35 107 10 0 14 chain 125593 chr5 180915260 + 24311218 24312904 HERVK14-int 1672 - 7 1667 29216 6 1 0 134 17 6 9 2 0 31 1 0 6 0 1 56 1 0 104 5 4 82 8 11 110 2 1 33 16 12 77 1 0 163 1 0 194 0 1 11 1 0 13 7 7 27 1 0 227 4 0 34 2 1 46 1 4 164 1 0 49 1 0 11 1 0 25 chain 27726 chr5 180915260 + 24313112 24313452 LTR14A 344 - 0 344 93949 177 1 5 162 chain 259694 chr5 180915260 + 24313454 24318520 L1P3 4156 - 488 4153 15719 420 0 1 150 3 7 214 1417 0 184 0 1 9 0 1 38 23 15 96 0 1 109 3 1 18 0 1 503 1 2 468 0 5 76 0 1 6 3 1 234 4 5 139 224 0 8 25 249 87 2 1 206 3 2 84 6 5 59 5 19 239 chain 7196 chr5 180915260 + 24314753 24314839 LTR12D 1347 + 587 673 176099 86 chain 3326 chr5 180915260 + 24314841 24314881 LTR12D 1347 + 484 524 218468 40 chain 3694 chr5 180915260 + 24315014 24315059 LTR12D 1347 + 706 752 212022 24 0 1 21 chain 2019 chr5 180915260 + 24315467 24315488 LTR12D 1347 + 1054 1075 238440 21 chain 49753 chr5 180915260 + 24360565 24361275 L1PA8 5853 + 5135 5842 59189 34 21 23 103 4 5 264 1 0 44 2 0 51 19 0 19 2 1 10 4 3 34 0 1 13 3 21 19 1 0 62 chain 22742 chr5 180915260 + 24363489 24363765 AluSp 311 - 34 311 116859 261 1 2 14 chain 73797 chr5 180915260 + 24370784 24371575 L1HS 6032 - 0 791 46474 791 chain 174632 chr5 180915260 + 24371575 24373441 L1HS 6032 + 3365 5232 21523 1862 0 1 4 chain 99148 chr5 180915260 + 24374735 24375918 L1PA7 6471 + 5254 6441 36989 246 4 6 102 0 1 89 0 2 622 1 0 119 chain 42161 chr5 180915260 + 24387151 24387680 LTR12 884 + 0 634 66442 25 1 0 41 0 41 167 4 71 36 2 0 253 chain 365300 chr5 180915260 + 24387736 24399087 HERV9-int 5642 + 14 4824 11223 38 2 1 62 17 22 231 0 1 216 1 0 196 43 42 50 0 85 69 80 0 38 159 0 54 0 1 258 0 1 276 1 2 83 1 22 333 0 1 904 6 11 174 3 0 739 0 1 134 6406 0 30 0 1 473 36 22 227 0 1 11 chain 277527 chr5 180915260 + 24393124 24396484 Harlequin-int 5206 - 1729 5070 14773 1198 0 1 128 0 1 589 10 11 256 2 1 111 15 0 396 0 1 235 0 2 63 8 0 178 1 0 170 chain 24908 chr5 180915260 + 24397825 24398308 LTR2B 499 - 0 499 105291 39 17 16 46 42 54 164 1 4 54 2 0 4 6 0 7 11 10 26 27 29 15 0 10 7 1 0 14 chain 17736 chr5 180915260 + 24400779 24401005 LTR12 884 + 356 604 133606 12 0 22 214 chain 14097 chr5 180915260 + 24401010 24401180 LTR12 884 + 712 882 144232 170 chain 24003 chr5 180915260 + 24411350 24411647 AluY 311 + 0 298 110313 55 0 4 64 7 4 171 chain 18624 chr5 180915260 + 24442551 24442828 L1PA8 5853 - 6 278 131155 87 1 0 15 2 1 49 19 17 50 0 1 19 2 0 33 chain 12603 chr5 180915260 + 24442877 24443065 Tigger2 2703 - 42 222 149829 36 4 7 7 11 0 130 chain 52860 chr5 180915260 + 24451062 24451864 LTR17 781 - 53 781 57095 236 32 26 48 67 0 48 0 1 42 1 0 65 0 2 81 1 0 23 1 0 97 1 0 59 chain 4592 chr5 180915260 + 24457175 24457241 Tigger1 2417 - 818 883 199729 47 2 1 17 chain 23379 chr5 180915260 + 24458680 24458956 L1PA5 6144 - 0 273 113763 101 3 0 172 chain 86039 chr5 180915260 + 24465847 24466886 LTR5A 1029 + 0 1028 41140 149 1 0 46 11 12 648 1 0 75 10 0 98 chain 33396 chr5 180915260 + 24481540 24482000 LTR19A 502 - 0 502 78571 15 12 16 11 0 1 139 3 1 5 0 3 74 1 0 16 1 38 183 chain 6883 chr5 180915260 + 24499047 24499125 LTR12E 1234 - 231 309 178329 78 chain 20991 chr5 180915260 + 24531528 24531890 THE1B 368 - 0 368 123952 112 18 17 9 1 0 16 43 49 55 1 2 25 1 2 81 chain 3863 chr5 180915260 + 24605173 24605230 L1ME1 1623 + 1029 1086 209399 33 0 2 5 2 0 17 chain 19730 chr5 180915260 + 24649772 24650050 LTR3A 482 + 0 293 128012 20 8 0 136 7 16 23 0 14 84 chain 7656 chr5 180915260 + 24650050 24650160 HERVK3-int 3053 + 328 430 173188 41 1 0 18 2 0 18 5 0 25 chain 502003 chr5 180915260 + 24654838 24661001 L1PA6 6164 - 5 6164 6727 5 2 0 137 1 2 10 8 3 1784 0 2 36 0 1 16 0 1 207 1 2 210 2 3 348 0 1 118 0 3 20 0 20 40 0 1 11 6 4 333 0 1 70 5 0 436 14 0 831 1 0 352 1 7 634 2 1 106 25 32 82 61 40 81 7 8 160 chain 16966 chr5 180915260 + 24661005 24661221 LTR3A 482 + 268 482 135678 139 2 0 75 chain 6331 chr5 180915260 + 24682703 24682792 THE1C-int 1605 + 126 269 182536 13 3 57 73 chain 18924 chr5 180915260 + 24694536 24694939 MSTA 426 - 0 424 130307 108 2 16 60 34 35 12 2 0 5 39 47 24 16 17 27 1 0 28 9 9 36 chain 53131 chr5 180915260 + 24702477 24703103 L1PA4 6152 - 0 643 56940 6 0 5 243 1 0 49 0 13 327 chain 65727 chr5 180915260 + 24721588 24722389 L1PA7 6471 - 234 1034 50234 473 1 0 147 0 3 20 0 2 65 8 4 67 1 0 19 chain 16943 chr5 180915260 + 24722390 24722602 L1PA7 6471 + 6257 6469 135743 212 chain 14372 chr5 180915260 + 24725414 24725570 L1PA5 6144 + 5982 6138 143295 156 chain 24716 chr5 180915260 + 24729176 24729476 AluY 311 + 0 295 106347 131 5 0 164 chain 32005 chr5 180915260 + 24735456 24735911 LTR3A 482 + 0 482 80857 161 4 13 19 0 14 50 3 0 8 2 0 71 0 1 6 0 1 45 0 1 17 1 0 13 13 20 42 chain 9823 chr5 180915260 + 24740465 24740587 MSTA 426 + 299 422 161484 112 0 1 10 chain 6107 chr5 180915260 + 24747442 24747517 L1P1 4361 - 62 137 184363 75 chain 37123 chr5 180915260 + 24750546 24751034 HERVK14-int 1672 - 1189 1671 73350 144 2 0 27 16 15 208 1 0 48 1 0 11 1 0 29 chain 223700 chr5 180915260 + 24751825 24754727 L1P2 5180 - 937 3857 17672 239 0 20 329 6 0 133 4 0 339 2 0 24 4 5 363 0 4 427 0 2 150 0 2 688 39 40 85 8 8 62 chain 115426 chr5 180915260 + 24754727 24756232 L1PA7 6471 + 4943 6457 32604 41 0 1 123 5 1 54 0 1 361 0 1 91 1 4 76 13 14 59 7 11 357 1 8 9 1 0 41 11 8 93 28 27 133 chain 28176 chr5 180915260 + 24757872 24758252 MLT2A1 477 + 0 379 92388 167 15 13 24 0 1 174 chain 2525 chr5 180915260 + 24773805 24773833 MLT2B4 540 - 4 32 232837 28 chain 35452 chr5 180915260 + 24779927 24780316 L1PA4 6152 - 11 400 75617 389 chain 22566 chr5 180915260 + 24791674 24791938 L1PA3long 6157 + 5886 6149 117735 124 1 0 139 chain 85454 chr5 180915260 + 24826986 24828034 L1PA7 6471 - 2 1055 41360 10 2 0 201 0 1 627 4 10 204 chain 136591 chr5 180915260 + 24828038 24829715 L1PA7 6471 + 3710 5409 26717 50 6 16 751 0 4 132 0 8 738 chain 14749 chr5 180915260 + 24830689 24830860 L1PA3long 6157 - 0 164 142108 152 7 0 12 chain 170478 chr5 180915260 + 24885780 24887909 L1PA7 6471 + 4329 6469 21993 112 0 3 299 0 4 39 10 9 29 0 1 130 3 0 128 9 11 529 0 2 509 7 8 154 3 4 86 11 12 71 chain 3666 chr5 180915260 + 24904381 24904424 MER58A 224 - 50 93 212466 43 chain 36750 chr5 180915260 + 24920361 24920783 L1PA5 6144 - 12 434 73875 422 chain 8870 chr5 180915260 + 24925042 24925177 L1PA8 5853 + 5715 5848 166282 23 7 6 16 2 1 87 chain 15794 chr5 180915260 + 24941728 24941957 MER30 238 - 0 238 138967 48 3 0 57 14 26 107 chain 15263 chr5 180915260 + 24954093 24954261 L1PA4 6152 - 6 174 140590 168 chain 7661 chr5 180915260 + 24959925 24960026 MLT1A0 366 - 205 306 173158 101 chain 172563 chr5 180915260 + 24964949 24967047 L1PA7 6471 - 6 2122 21754 7 2 0 142 3 0 5 14 17 144 0 1 205 0 1 13 0 1 4 1 0 223 0 2 83 0 3 11 1 0 341 0 8 18 0 1 403 0 4 64 0 1 414 chain 137679 chr5 180915260 + 24976818 24978398 L1PA5 6144 - 1 1583 26528 155 0 1 1223 6 7 196 chain 251125 chr5 180915260 + 24978399 24981299 L1PA5 6144 + 1622 4543 16166 223 1 0 318 0 7 399 0 1 126 5 6 462 1 0 125 1 0 219 0 1 164 1 0 5 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38 0 1 65 2 0 7 chain 551259 chr5 180915260 + 25113846 25119863 L1PA2 6032 - 4 6026 1279 9 2 0 1498 0 5 1181 1 0 1879 0 3 1447 chain 9258 chr5 180915260 + 25144338 25144451 L1PA5 6144 + 6020 6131 164268 58 3 1 52 chain 4226 chr5 180915260 + 25145983 25146029 MSTD 398 + 352 398 204211 46 chain 35527 chr5 180915260 + 25157572 25158042 L1PA7 6471 - 4 489 75507 9 1 0 150 2 1 131 1 17 25 1 2 150 chain 56022 chr5 180915260 + 25162651 25163355 LTR30 714 + 0 714 55110 213 1 9 312 8 7 83 8 11 79 chain 33877 chr5 180915260 + 25163432 25163899 MER4A1 472 - 0 468 77817 208 21 0 17 3 24 213 0 1 5 chain 374043 chr5 180915260 + 25175274 25180755 L1PA8A 6298 - 7 5155 10961 506 0 1 4 23 22 42 28 30 39 25 25 46 3 6 40 0 11 14 22 21 139 0 6 425 2 5 86 5 6 446 42 30 59 2 0 403 2 0 6 1 0 4 7 10 41 325 0 23 0 2 53 53 35 42 6 7 176 1 0 45 12 17 26 11 9 87 0 1 90 1 0 188 0 1 4 1 0 434 0 1 13 5 1 22 0 1 30 4 0 1271 1 0 4 8 9 83 chain 137102 chr5 180915260 + 25198725 25200695 LTR12C 1709 - 0 1709 26619 191 14 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25713715 MER1B 344 + 95 266 178294 17 14 18 6 3 0 19 0 12 10 39 28 61 chain 8253 chr5 180915260 + 25730650 25730757 MER70B 575 + 3 112 169666 37 0 1 8 1 0 28 0 2 33 chain 18600 chr5 180915260 + 25756878 25757122 L1PA5 6144 + 5884 6130 131228 97 8 3 10 1 8 128 chain 18014 chr5 180915260 + 25803962 25804223 THE1-int 844 - 18 270 132816 20 1 0 32 2 0 61 18 12 127 chain 24127 chr5 180915260 + 25810654 25810944 AluY 311 + 11 297 109599 115 4 0 171 chain 26488 chr5 180915260 + 25825298 25825595 L1PA4 6152 - 11 308 98087 297 chain 51056 chr5 180915260 + 25829780 25830468 LTR12_ 688 - 1 688 58277 524 2 1 16 1 26 30 25 0 90 chain 87584 chr5 180915260 + 25831371 25832354 L1P1 4361 + 3347 4328 40539 804 1 0 154 1 0 23 chain 26703 chr5 180915260 + 25833357 25833650 AluYa5 310 - 20 310 97313 164 3 0 126 chain 27477 chr5 180915260 + 25843760 25844115 THE1A 353 - 0 353 94725 155 1 0 88 1 0 110 chain 38475 chr5 180915260 + 25857469 25857946 LTR10F 562 - 0 536 71481 297 10 17 10 0 3 12 0 49 148 chain 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55 13 21 49 chain 39449 chr5 180915260 + 27399597 27400074 L1PA6 6164 + 5685 6162 70093 223 1 0 4 0 1 249 chain 55877 chr5 180915260 + 27405348 27405992 L1PA5 6144 + 5494 6138 55194 644 chain 9574 chr5 180915260 + 27427371 27427513 L1PB1 5432 + 5159 5296 162722 9 2 0 52 2 1 16 1 0 44 1 0 15 chain 24333 chr5 180915260 + 27431425 27431744 AluY 311 + 0 303 108458 106 1 2 25 19 2 168 chain 7046 chr5 180915260 + 27436264 27436350 LTR31 607 - 0 86 177144 86 chain 129851 chr5 180915260 + 27438573 27440121 LTR12C 1709 - 0 1709 28123 481 0 4 107 3 1 5 1 0 77 0 1 37 0 159 523 1 0 4 0 1 309 chain 72774 chr5 180915260 + 27478685 27479483 L1PA3long 6157 + 5359 6157 47135 798 chain 30158 chr5 180915260 + 27514246 27514648 MLT2A1 477 - 78 477 84314 8 4 0 6 3 0 61 1 0 151 5 9 23 0 1 140 chain 436895 chr5 180915260 + 27514648 27520276 HERVL-int 5654 - 0 5651 9132 173 0 1 40 5 6 83 10 17 142 4 5 4 1 0 122 0 2 172 0 1 539 7 8 234 7 8 1011 1 4 137 0 3 37 13 7 223 0 2 107 1 0 764 9 10 108 18 21 200 1 0 342 11 12 237 1 6 577 1 0 286 chain 29478 chr5 180915260 + 27520393 27520783 MLT2A1 477 - 83 477 86726 70 1 0 149 6 10 24 0 1 140 chain 28627 chr5 180915260 + 27522291 27522599 AluYa5 310 + 0 305 90624 97 3 0 208 chain 17364 chr5 180915260 + 27537000 27537197 LTR5A 1029 - 833 1029 134614 49 1 0 147 chain 24218 chr5 180915260 + 27575686 27575971 AluY 311 + 0 281 109107 124 4 0 157 chain 200470 chr5 180915260 + 27613496 27616241 L1PA8 5853 - 8 3602 19174 85 2 1 18 6 5 54 1 0 74 2 0 32 13 12 473 18 21 25 0 834 201 0 1 335 6 1 194 0 1 138 0 4 14 14 13 4 0 1 90 21 6 137 1 2 77 0 1 78 4 26 142 1 0 5 1 2 43 33 40 284 0 1 119 chain 421369 chr5 180915260 + 27630687 27636225 HERVL-int 5654 - 69 5653 9502 5 3 0 47 20 16 102 8 10 70 4 10 307 23 35 34 1 4 213 9 8 669 0 1 95 0 1 945 3 32 515 0 6 153 2 0 48 7 8 252 6 7 162 17 18 270 4 0 95 1 0 828 35 30 33 8 9 302 0 2 242 chain 9948 chr5 180915260 + 27638960 27639084 MER4A1 472 + 0 124 160845 124 chain 159536 chr5 180915260 + 27641856 27643664 L1PA5 6144 + 4333 6140 23393 1497 0 1 54 0 1 244 3 0 10 chain 41163 chr5 180915260 + 27659897 27660418 L1PA7 6471 + 5933 6468 67694 156 5 1 68 1 0 213 0 19 78 chain 68137 chr5 180915260 + 27669682 27670464 L1PA6 6164 - 5 785 49186 5 2 0 775 chain 39207 chr5 180915260 + 27672181 27672623 L1PA4 6152 - 9 451 70446 442 chain 301097 chr5 180915260 + 27677982 27681655 L1PA6 6164 + 2504 6156 13368 250 2 1 429 5 6 242 4 0 270 8 0 90 0 1 805 10 11 487 0 2 116 5 0 100 0 1 511 1 0 99 8 0 231 chain 14465 chr5 180915260 + 27691454 27691654 L1PA16 3655 + 3356 3558 143003 55 1 2 72 1 2 71 chain 159226 chr5 180915260 + 27693830 27696675 L1PB1 5432 + 3054 5424 23438 187 6 7 221 9 8 86 0 23 142 0 8 84 0 4 141 12 0 26 7 0 220 2 3 101 0 1 301 39 18 24 15 0 27 0 2 20 1 0 97 2 5 5 3 0 199 4 6 56 455 31 7 5 0 24 1 0 7 32 25 47 6 5 15 1 0 43 1 0 16 3 0 7 13 5 11 0 3 5 25 17 26 1 0 21 1 0 10 1 0 19 1 0 4 chain 222185 chr5 180915260 + 27730378 27732895 L1PA4 6152 - 9 2535 17748 837 1 5 943 0 4 415 0 1 321 chain 125515 chr5 180915260 + 27743386 27744871 LTR12C 1709 + 0 1709 29240 525 0 1 193 0 118 70 5 7 198 1 0 6 2 0 106 0 4 186 0 102 193 chain 173518 chr5 180915260 + 27753063 27754968 L1PA3long 6157 + 4248 6157 21649 1062 0 4 843 chain 25610 chr5 180915260 + 27767096 27767396 AluSp 311 - 0 300 101677 300 chain 2947 chr5 180915260 + 27777690 27777721 MLT2B4 540 - 0 31 226182 31 chain 43839 chr5 180915260 + 27817841 27818380 MER41A 554 + 15 554 64399 539 chain 30765 chr5 180915260 + 27860526 27860954 MER4-int 2692 - 914 1366 82928 13 7 8 7 0 1 6 5 25 49 0 3 7 0 1 203 2 0 129 chain 9175 chr5 180915260 + 27870762 27870900 Tigger3b 1229 + 631 769 164686 12 0 1 47 4 5 68 2 0 5 chain 508487 chr5 180915260 + 27883998 27890125 L1PA6 6164 - 2 6164 6280 9 2 0 85 4 3 87 4 0 259 10 8 5 0 2 298 1 0 383 0 1 29 0 2 337 0 1 685 0 1 312 5 6 206 0 19 127 0 1 80 0 1 25 0 1 4 2 0 782 0 4 163 0 1 557 0 1 160 5 6 537 1 2 310 0 3 150 2 1 105 1 0 24 0 8 371 chain 436698 chr5 180915260 + 27898097 27903704 HERVL-int 5654 + 0 5654 9144 152 0 1 161 0 17 226 0 1 139 1 0 4 11 15 294 13 10 374 0 3 314 4 0 266 1 2 8 0 25 258 2 1 417 7 0 6 0 7 663 0 1 91 26 27 176 13 6 190 0 1 511 0 4 66 1 0 155 0 3 835 0 1 101 1 2 120 chain 30299 chr5 180915260 + 27903704 27904128 MLT2A1 477 + 0 477 83915 10 0 2 157 4 1 9 0 1 108 1 20 77 4 0 7 10 48 37 chain 27975 chr5 180915260 + 27913119 27913428 AluYa5 310 - 6 310 93092 7 5 0 297 chain 59113 chr5 180915260 + 27919375 27920014 L1PA2 6032 + 5392 6031 53323 639 chain 23111 chr5 180915260 + 27941491 27941784 AluY 311 + 16 297 115087 117 1 0 4 0 1 16 1 0 135 11 0 8 chain 129194 chr5 180915260 + 27955081 27956527 L1PA3long 6157 + 4711 6157 28267 518 1 0 4 0 1 765 3 1 6 0 2 149 chain 49202 chr5 180915260 + 27964582 27965188 LTR14B 630 + 12 630 59591 7 0 2 243 0 7 7 7 0 276 0 10 66 chain 4784 chr5 180915260 + 27986287 27986390 MADE1 96 - 0 96 197526 21 26 4 13 4 19 39 chain 132101 chr5 180915260 + 28001370 28003086 L1PA7 6471 - 7 1718 27617 134 21 23 126 0 1 78 6 0 23 11 21 44 41 31 366 2 0 514 0 1 147 1 0 202 chain 44479 chr5 180915260 + 28003430 28004006 L1P1 4361 - 40 611 63604 16 1 0 157 1 0 41 4 0 262 0 1 94 chain 22201 chr5 180915260 + 28036598 28036898 AluY 311 + 1 309 119341 18 0 1 110 1 3 6 0 13 121 16 8 28 chain 20100 chr5 180915260 + 28044539 28044770 L1PA5 6144 + 5912 6143 126826 231 chain 205298 chr5 180915260 + 28047237 28050000 HERVH-int 3825 + 1084 3825 18838 26 62 65 6 1 0 5 0 1 36 15 0 201 1 0 7 9 0 171 0 1 4 1 0 172 0 1 621 22 20 255 0 1 4 1 0 421 21 22 4 1 0 102 28 30 42 1 0 523 chain 27387 chr5 180915260 + 28051944 28052398 LTR7B 505 + 0 497 95012 108 0 10 57 0 38 12 4 28 27 29 0 42 15 16 27 1 0 29 6 7 40 14 13 43 chain 2888 chr5 180915260 + 28053256 28053297 MIR 256 + 84 125 227225 32 0 1 4 1 0 4 chain 8246 chr5 180915260 + 28062356 28062521 MLT1B 390 - 0 170 169704 21 53 58 91 chain 56315 chr5 180915260 + 28064778 28065383 L1PA2 6032 + 5420 6025 54956 605 chain 115699 chr5 180915260 + 28076742 28078323 LTR12C 1709 - 1 1709 32558 73 1 0 8 1 0 221 0 1 100 0 1 75 17 11 106 1 0 275 1 0 11 0 119 236 11 9 44 30 4 33 0 43 39 6 8 28 1 0 263 chain 42131 chr5 180915260 + 28137015 28137521 LTR10F 562 - 0 562 66471 190 0 1 139 4 1 41 0 56 92 0 2 40 chain 169952 chr5 180915260 + 28184634 28186576 L1PA5 6144 - 0 1944 22054 11 3 1 101 1 0 279 0 1 456 2 1 302 0 1 646 0 4 141 chain 360986 chr5 180915260 + 28196260 28200217 L1PA2 6032 - 0 3958 11342 2470 0 1 1487 chain 107372 chr5 180915260 + 28200230 28201423 L1HS 6032 + 314 1512 34872 210 0 4 143 0 1 270 1 0 4 0 1 565 chain 27975 chr5 180915260 + 28227906 28228269 THE1B 368 + 0 368 93091 15 1 0 25 0 5 127 3 2 24 0 2 168 chain 6873 chr5 180915260 + 28229054 28229136 L1PA6 6164 + 6082 6162 178409 72 2 0 8 chain 6396 chr5 180915260 + 28229196 28229507 L1MD1 2063 - 1657 1934 182057 25 6 0 9 40 6 52 118 117 14 24 31 23 chain 118314 chr5 180915260 + 28247230 28248699 L1PA5 6144 - 12 1463 31683 76 57 38 21 0 2 4 1 0 697 1 0 250 0 1 264 1 0 5 0 1 92 chain 18292 chr5 180915260 + 28248699 28248914 L1PA5 6144 + 4436 4651 131858 215 chain 117376 chr5 180915260 + 28273465 28275291 L1PA8A 6298 - 293 1904 32004 148 0 1 177 309 0 110 0 1 75 1 4 84 16 8 218 0 1 67 0 1 49 0 1 307 29 121 33 0 1 102 0 1 4 1 0 23 0 1 73 chain 3154 chr5 180915260 + 28275302 28275340 MLT1B 390 + 346 384 221866 38 chain 3298 chr5 180915260 + 28275551 28275587 MLT2C1 407 + 216 252 219024 36 chain 53146 chr5 180915260 + 28286900 28287597 LTR30 714 + 0 714 56928 202 1 0 5 5 6 30 6 11 280 13 12 19 0 13 136 chain 39211 chr5 180915260 + 28317218 28317684 L1PA7 6471 - 10 471 70444 144 5 0 317 chain 4723 chr5 180915260 + 28317684 28317737 L1PA7 6471 + 5948 6001 198240 53 chain 9858 chr5 180915260 + 28335319 28335462 L1PB4 2604 + 2432 2572 161296 68 3 2 53 3 1 16 chain 4745 chr5 180915260 + 28344892 28344957 MLT2B4 540 - 348 411 197974 54 2 0 9 chain 232428 chr5 180915260 + 28352605 28355315 L1PA5 6144 + 3446 6142 17176 258 0 1 742 0 3 34 0 4 140 1 0 150 21 0 169 1 2 337 15 15 339 5 7 126 0 1 361 4 0 7 chain 26595 chr5 180915260 + 28356950 28357230 AluYk12 309 - 8 288 97682 280 chain 75941 chr5 180915260 + 28368452 28369507 MER11C 1089 - 17 1089 45521 9 0 1 146 1 0 50 0 1 102 1 2 23 0 1 38 1 0 4 1 5 88 70 69 147 1 0 65 0 4 62 0 9 246 chain 144321 chr5 180915260 + 28378090 28379950 L1PA8 5853 - 0 1848 25425 76 1 0 16 2 1 19 7 6 28 14 13 14 1 0 72 2 0 46 1 0 47 10 8 419 0 1 78 2 0 7 2 0 256 0 1 681 4 8 45 4 0 6 chain 23012 chr5 180915260 + 28389672 28389986 L1PA5 6144 - 4 320 115566 136 6 0 7 17 25 55 0 1 79 1 0 13 chain 17737 chr5 180915260 + 28389987 28390186 L1PA5 6144 + 5576 5775 133601 199 chain 5462 chr5 180915260 + 28392997 28393063 MLT1A1 405 + 267 333 190395 66 chain 32818 chr5 180915260 + 28399356 28399789 MER57A1 433 + 0 433 79503 86 3 1 188 0 1 6 1 2 149 chain 6563 chr5 180915260 + 28408259 28408426 MER66-int 1576 - 46 168 180762 39 16 0 10 23 2 16 7 0 5 1 0 16 0 2 12 1 0 16 1 0 4 chain 8143 chr5 180915260 + 28412378 28412547 MER66B 489 - 60 232 170277 30 3 6 7 4 0 15 33 38 45 1 0 31 chain 3111 chr5 180915260 + 28438217 28438250 L1MA6 2487 + 2342 2375 222714 33 chain 363649 chr5 180915260 + 28445867 28450577 HERVL-int 5654 + 890 5648 11272 931 18 18 384 0 3 30 0 12 132 0 1 86 2 1 104 4 5 26 5 6 325 23 32 75 0 1 58 0 6 269 0 1 147 0 1 386 0 1 476 0 1 190 7 8 121 0 1 29 0 6 462 3 2 202 0 4 215 chain 58902 chr5 180915260 + 28465146 28465818 L1PA5 6144 - 5 677 53454 672 chain 99049 chr5 180915260 + 28484514 28485722 L1PA7 6471 + 5250 6470 37016 69 1 2 218 0 1 80 1 0 5 0 1 255 4 5 45 0 9 530 chain 168155 chr5 180915260 + 28502159 28503986 L1PA2 6032 - 0 1827 22269 1827 chain 98577 chr5 180915260 + 28503986 28505061 L1PA2 6032 + 3128 4203 37060 1075 chain 219692 chr5 180915260 + 28535823 28538374 L1PA5 6144 - 14 2573 17903 70 0 1 68 1 2 468 0 2 100 0 1 40 0 1 62 0 1 692 1 0 159 0 1 410 0 1 480 chain 5306 chr5 180915260 + 28546794 28546853 L1PA4 6152 - 6 65 191951 59 chain 39347 chr5 180915260 + 28547722 28548224 LTR14B 630 + 0 630 70259 18 0 1 4 1 0 94 0 129 304 1 0 80 chain 15764 chr5 180915260 + 28563399 28563590 L1PA8 5853 - 348 540 139073 163 0 1 28 chain 20559 chr5 180915260 + 28563591 28563914 L1PA8 5853 + 5530 5847 125439 34 1 0 44 3 1 7 0 1 59 26 24 40 2 1 19 1 0 87 chain 74956 chr5 180915260 + 28596350 28597183 SVA_D 2077 - 4 1113 46035 604 0 274 157 0 2 72 chain 37163 chr5 180915260 + 28597768 28598203 L1PA5 6144 - 6 441 73289 140 3 2 6 0 1 286 chain 83475 chr5 180915260 + 28599061 28600122 MER11B 1079 + 0 1079 42128 149 0 1 385 12 12 33 14 15 175 15 28 81 0 1 150 0 1 32 0 1 15 chain 14954 chr5 180915260 + 28601515 28601732 Tigger2 2703 + 2318 2538 141463 26 1 2 9 0 2 6 1 6 6 5 0 163 chain 47172 chr5 180915260 + 28613232 28613756 L1PA3long 6157 + 5633 6157 61072 524 chain 4161 chr5 180915260 + 28656644 28656729 L1MA9 1812 - 160 238 205078 6 3 0 25 7 5 22 1 0 16 1 0 4 chain 36076 chr5 180915260 + 28669145 28669557 L1PA5 6144 + 5731 6143 74788 412 chain 84949 chr5 180915260 + 28675061 28676138 MER11B 1079 - 0 1079 41536 22 11 0 26 0 1 99 1 2 49 0 1 106 6 8 402 0 5 304 0 3 51 chain 4877 chr5 180915260 + 28683835 28684021 MLT1A 405 + 142 350 196525 19 112 134 55 chain 9137 chr5 180915260 + 28698546 28698653 L1PA5 6144 + 6037 6144 164875 107 chain 14718 chr5 180915260 + 28719757 28719933 L1PA4 6152 - 6 183 142204 135 0 1 41 chain 31400 chr5 180915260 + 28730825 28731416 L1PB1 5432 + 4867 5423 81815 231 12 11 5 3 0 10 40 35 9 2 0 52 7 6 11 8 7 37 1 0 8 1 0 4 16 4 26 13 10 13 2 0 24 1 0 21 1 0 13 1 0 19 chain 52107 chr5 180915260 + 28754780 28755367 L1PA4 6152 - 0 593 57556 6 0 5 242 0 1 339 chain 245796 chr5 180915260 + 28756673 28759421 L1HS 6032 - 1748 4507 16464 921 4 13 886 0 2 937 chain 165110 chr5 180915260 + 28759423 28761250 L1PA3long 6157 + 4328 6155 22641 1827 chain 554085 chr5 180915260 + 28798897 28804921 L1PA2 6032 + 0 6031 938 473 0 4 1410 0 1 3114 0 2 1027 chain 22206 chr5 180915260 + 28805081 28805344 L1PA7 6471 + 6210 6466 119319 248 7 0 8 chain 125912 chr5 180915260 + 28843109 28844494 L1PA2 6032 - 1 1386 29126 1385 chain 86622 chr5 180915260 + 28844494 28845454 L1PA2 6032 + 3741 4701 40559 960 chain 221086 chr5 180915260 + 28845454 28847916 L1HS 6032 + 1275 3738 17810 1773 0 1 689 chain 188529 chr5 180915260 + 28874602 28876690 L1PA3long 6157 - 1 2091 20191 1106 0 1 946 6 7 30 chain 10829 chr5 180915260 + 28888917 28889237 THE1D 372 + 0 334 156872 37 68 66 20 101 117 94 chain 21140 chr5 180915260 + 28929822 28930140 LTR7B 505 + 84 441 123408 21 0 10 56 0 42 11 4 28 28 36 0 85 1 0 76 chain 56468 chr5 180915260 + 28936204 28936953 L1PA7 6471 + 5718 6469 54868 75 1 0 383 17 0 11 0 17 92 27 30 143 chain 3728 chr5 180915260 + 28947864 28947908 L1ME1 1623 + 260 304 211506 44 chain 23403 chr5 180915260 + 28951585 28951861 L1PA5 6144 - 0 275 113629 15 1 0 260 chain 206966 chr5 180915260 + 28951877 28954286 L1P1 4361 - 1937 4355 18720 404 0 1 226 0 2 1061 0 1 82 0 1 313 0 4 323 chain 258162 chr5 180915260 + 28971336 28974772 HERVL-int 5654 - 190 5654 15802 51 0 1 48 0 3 170 11 86 224 45 0 3 3 0 328 6 7 135 10 1997 193 0 1 79 0 12 425 1 0 402 0 10 171 2 0 15 0 1 129 0 4 94 0 5 34 31 6 31 0 2 98 1 0 73 0 2 168 1 0 368 5 6 27 1 2 53 chain 3502 chr5 180915260 + 28974772 28974809 MLT2A1 477 - 0 37 215348 37 chain 101942 chr5 180915260 + 28983223 28984553 L1PA8A 6298 - 7 1342 36280 89 27 21 4 1 0 22 0 2 5 2 0 59 0 6 65 1 0 85 0 1 432 0 7 407 5 4 126 chain 86350 chr5 180915260 + 28984554 28985698 L1PA8A 6298 + 3811 4979 41021 18 5 26 4 1 0 14 1 2 476 3 7 78 1 0 121 5 6 255 2 1 160 chain 516882 chr5 180915260 + 28991188 28997257 L1PA5 6144 + 3 6135 5499 152 22 38 72 0 5 258 0 15 156 17 16 1252 0 5 341 1 0 863 1 0 243 1 11 654 0 2 148 0 3 37 0 1 69 0 4 928 0 4 701 22 23 131 chain 9170 chr5 180915260 + 29040159 29040267 L1PA4 6152 + 6040 6151 164701 5 0 2 83 0 1 20 chain 14977 chr5 180915260 + 29046944 29047170 L1PA8 5853 + 5632 5853 141387 33 5 3 11 1 0 13 3 1 6 0 1 40 2 1 112 chain 132322 chr5 180915260 + 29056211 29057687 L1PA4 6152 - 0 1480 27558 844 0 4 632 chain 91060 chr5 180915260 + 29057694 29058711 L1PA4 6152 + 3637 4655 39271 51 0 1 966 chain 2971 chr5 180915260 + 29072948 29072981 L1MA7 2200 - 118 151 225644 33 chain 34504 chr5 180915260 + 29092141 29092600 LTR2 463 + 2 463 76897 174 12 14 132 0 1 58 0 1 29 1 0 28 1 0 24 chain 25036 chr5 180915260 + 29113390 29113679 L1PA2 6032 - 0 289 104613 13 0 1 6 1 0 269 chain 139775 chr5 180915260 + 29126546 29128293 LTR12C 1709 - 0 1709 26174 479 2 6 31 1 0 75 3 1 6 1 0 274 1 0 43 0 1 38 45 6 179 1 2 568 chain 3874 chr5 180915260 + 29127500 29127545 LTR12C 1709 - 797 842 117780 45 chain 20217 chr5 180915260 + 29148446 29148697 L1PA4 6152 - 9 259 126479 100 6 5 145 chain 496753 chr5 180915260 + 29186708 29192215 L1PA2 6032 - 11 6026 7021 330 0 1 111 0 1 1035 0 1 428 0 5 350 2 1 594 0 1 1227 1 6 580 7 508 131 7 0 508 0 1 196 chain 36108 chr5 180915260 + 29239986 29240461 LTR2B 499 - 0 490 74754 182 1 0 8 0 1 178 0 19 36 4 1 61 1 0 4 chain 488721 chr5 180915260 + 29270156 29276518 L1PA7 6471 + 7 6450 7417 45 2 1 76 85 76 20 27 38 39 0 5 103 1 4 223 4 0 362 3 4 483 0 4 16 0 1 153 5 4 34 1 11 557 0 1 420 0 9 370 0 2 28 0 4 136 0 28 74 4 5 176 5 4 26 0 4 69 8 0 97 0 11 106 17 16 27 7 8 117 8 6 169 1 0 388 3 4 7 0 1 41 0 1 279 6 7 111 5 6 171 0 4 415 0 3 17 0 1 24 10 3 41 1 0 404 2 0 295 0 10 38 chain 19786 chr5 180915260 + 29295836 29296513 LTR12C 1709 - 145 781 127858 24 1 0 42 374 365 15 41 10 180 chain 5834 chr5 180915260 + 29296125 29296195 LTR12C 1709 - 991 1061 186832 70 chain 204269 chr5 180915260 + 29315356 29317683 L1PA4 6152 - 1 2337 18908 147 25 25 503 0 2 1114 0 4 257 0 2 260 0 1 21 chain 2850 chr5 180915260 + 29394261 29394554 HERVFH21-int 991 + 725 927 227861 22 224 136 26 10 7 11 chain 30008 chr5 180915260 + 29396644 29396962 AluYb8 318 + 0 318 84781 318 chain 26473 chr5 180915260 + 29439401 29439681 AluYb8 318 - 0 280 98156 280 chain 30002 chr5 180915260 + 29458975 29459295 AluYb8 318 - 0 318 84804 10 2 0 308 chain 6793 chr5 180915260 + 29468206 29468287 MLT1D 503 + 418 499 179001 81 chain 4941 chr5 180915260 + 29472009 29472081 MLT1C 463 - 391 463 195786 20 2 3 27 1 0 22 chain 28284 chr5 180915260 + 29474271 29474643 MLT2A1 477 - 99 475 91993 174 0 1 23 0 1 5 10 7 24 0 1 123 1 5 12 chain 276198 chr5 180915260 + 29486170 29489122 L1HS 6032 - 1279 4233 14864 515 0 2 2437 chain 119594 chr5 180915260 + 29489122 29490428 L1PA2 6032 + 4730 6031 31097 677 5 0 624 chain 7849 chr5 180915260 + 29519215 29519318 MSTD 398 - 9 112 172003 103 chain 208523 chr5 180915260 + 29526937 29529310 L1PA4 6152 + 3773 6146 18604 387 0 1 1571 1 0 414 chain 497480 chr5 180915260 + 29536290 29542406 L1PA6 6164 - 14 6164 6981 124 7 8 186 0 1 509 0 4 191 0 1 473 5 4 467 1 2 45 1 0 40 0 5 671 0 12 63 1 5 38 6 7 104 0 1 112 0 5 388 5 6 86 0 1 11 0 1 245 19 0 114 2 1 78 16 17 111 0 1 54 0 1 542 5 6 293 4 5 765 6 7 131 0 1 4 0 3 10 0 7 183 chain 3665 chr5 180915260 + 29544887 29545074 L1MA7 2200 - 110 283 212470 31 123 111 19 2 0 12 chain 18993 chr5 180915260 + 29547612 29547983 THE1D 372 - 0 372 130129 32 1 0 94 92 93 51 0 1 6 2 0 70 8 10 15 chain 20206 chr5 180915260 + 29571108 29571376 L1PA7 6471 - 5 264 126513 127 21 13 5 1 0 114 chain 10456 chr5 180915260 + 29574987 29575239 L1PB1 5432 + 5173 5404 158462 47 2 1 27 73 60 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 29109 chr5 180915260 + 29575765 29576105 L1PA5 6144 + 5806 6141 88507 6 5 0 184 1 0 53 0 1 91 chain 41946 chr5 180915260 + 29593858 29594422 PABL_A 660 + 92 648 66690 35 1 0 92 19 11 48 8 9 361 chain 51497 chr5 180915260 + 29600964 29601708 MER4E 760 + 0 742 57969 23 0 1 105 81 69 34 2 3 36 0 10 43 0 1 36 2 0 368 1 0 13 chain 29137 chr5 180915260 + 29602719 29603092 MLT2A1 477 - 101 473 88382 172 0 1 23 0 1 10 5 2 163 chain 63009 chr5 180915260 + 29603981 29604754 L1PA5 6144 + 5359 6143 51441 25 0 6 16 7 13 386 0 1 231 10 8 98 chain 3681 chr5 180915260 + 29609720 29609759 L1PA2 6032 - 435 474 210736 39 chain 40916 chr5 180915260 + 29609759 29610202 L1PA2 6032 + 5589 6032 68016 443 chain 3963 chr5 180915260 + 29647850 29647932 L1PB1 5432 - 8 86 207932 4 1 0 14 2 0 5 12 12 19 1 0 24 chain 17535 chr5 180915260 + 29647959 29648179 L1PB 1623 + 873 1089 134171 189 5 1 26 chain 30715 chr5 180915260 + 29685394 29685745 L1PA4 6152 - 0 352 83012 155 0 1 196 chain 128556 chr5 180915260 + 29704296 29705765 L1PA4 6152 + 4679 6151 28433 795 1 0 370 0 2 50 0 2 253 chain 30820 chr5 180915260 + 29748778 29749125 L1PA3long 6157 - 183 530 82837 347 chain 15029 chr5 180915260 + 29749125 29749290 L1PA3long 6157 + 5992 6157 141238 165 chain 61342 chr5 180915260 + 29754224 29755031 L1PA7 6471 - 6 815 52029 6 3 0 136 0 8 9 8 0 229 0 2 297 10 14 70 2 1 37 chain 87007 chr5 180915260 + 29755031 29756141 L1PA7 6471 + 4546 5657 40778 125 0 4 112 5 11 10 6 0 177 9 8 355 3 0 6 8 4 262 0 5 32 chain 5251 chr5 180915260 + 29776313 29776486 L1MCa 1829 - 1006 1197 192501 30 1 0 6 7 9 15 53 58 15 11 23 35 chain 22332 chr5 180915260 + 29788147 29788465 THE1B 368 + 13 322 118768 27 0 5 127 2 1 27 6 0 47 11 4 71 chain 14891 chr5 180915260 + 29794734 29794904 L1PA3long 6157 - 8 178 141659 170 chain 188693 chr5 180915260 + 29797631 29799760 L1PA4 6152 - 9 2137 20175 392 0 1 449 1 0 280 2 1 1005 chain 2974 chr5 180915260 + 29832629 29832665 Tigger1 2417 - 1450 1486 225577 36 chain 14689 chr5 180915260 + 29841680 29841843 L1PA5 6144 - 2 165 142292 163 chain 24072 chr5 180915260 + 29855072 29855357 L1PA4 6152 - 9 295 109919 75 0 1 210 chain 168698 chr5 180915260 + 29856044 29858175 L1PA7 6471 - 3 2131 22197 7 4 0 290 1 5 13 3 2 74 0 2 338 1 0 106 0 10 253 0 1 322 49 34 56 4 0 32 0 1 250 0 4 328 chain 79800 chr5 180915260 + 29858188 29859174 L1PA7 6471 + 3355 4343 43682 95 0 2 891 chain 149042 chr5 180915260 + 29877029 29878638 L1PA2 6032 - 0 1610 24748 341 0 1 1268 chain 7942 chr5 180915260 + 29883361 29883452 MER85 139 - 43 134 171366 91 chain 5567 chr5 180915260 + 29900594 29900656 L1PA4 6152 + 6007 6069 189405 62 chain 7343 chr5 180915260 + 29923592 29923682 HUERS-P3-int 2218 + 1146 1237 175138 22 0 1 68 chain 5859 chr5 180915260 + 29937827 29937893 MSTA 426 + 360 426 186595 66 chain 3761 chr5 180915260 + 29972170 29972212 MER3 215 + 165 207 210945 42 chain 13322 chr5 180915260 + 29986982 29987239 THE1C 375 + 98 375 146999 77 51 69 80 17 19 32 chain 78805 chr5 180915260 + 30005306 30006354 MER11C 1089 + 0 1064 44145 246 0 9 62 0 4 41 0 1 23 1 0 146 52 51 107 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 chain 5134 chr5 180915260 + 30012260 30012583 MER9a1 513 - 0 324 72312 281 0 1 42 chain 67008 chr5 180915260 + 30012618 30013355 L1P1 4361 - 126 862 49618 85 1 0 651 chain 100349 chr5 180915260 + 30013355 30014455 L1PA2 6032 + 4930 6032 36676 671 0 2 429 chain 2988 chr5 180915260 + 30014455 30014643 MER9a1 513 - 324 513 72312 87 23 24 78 chain 11964 chr5 180915260 + 30026549 30026798 L1PB1 5432 + 5159 5409 152343 10 4 0 50 1 0 18 1 0 21 38 53 16 9 6 13 2 0 24 1 0 21 1 0 13 1 0 5 chain 77176 chr5 180915260 + 30056165 30057567 L1PA8A 6298 + 5174 6291 44871 124 7 8 25 0 1 21 8 9 79 49 52 60 304 9 6 0 2 165 0 1 287 1 0 190 4 6 72 chain 80103 chr5 180915260 + 30070825 30071724 L1PA5 6144 - 1 899 43540 338 2 1 559 chain 51571 chr5 180915260 + 30071731 30072326 L1P1 4361 - 903 1496 57907 41 10 8 544 chain 23169 chr5 180915260 + 30072326 30072595 L1P1 4361 + 2589 2858 113046 269 chain 32712 chr5 180915260 + 30098759 30099161 L1PA7 6471 - 32 434 79666 402 chain 24527 chr5 180915260 + 30118535 30118827 AluSp 311 - 7 301 107392 22 0 2 270 chain 104133 chr5 180915260 + 30130548 30131857 L1PA7 6471 - 51 1386 35711 118 1 0 4 1 2 299 0 16 21 5 12 251 3 4 72 1 0 305 0 1 36 1 2 80 0 1 111 chain 91307 chr5 180915260 + 30166381 30167834 L1PB1 5432 - 8 1395 39153 20 1 0 11 2 1 22 1 0 24 2 0 11 12 9 18 24 13 15 1 0 43 1 0 68 0 2 5 37 27 21 33 0 9 6 7 82 26 22 75 0 1 5 7 6 200 1 0 68 1 0 7 4 0 7 1 5 459 0 1 123 chain 102035 chr5 180915260 + 30167834 30169190 L1PB1 5432 + 2663 4029 36250 167 3 0 10 1 2 423 0 1 205 12 15 23 0 3 128 2 3 166 3 7 213 chain 53064 chr5 180915260 + 30171434 30172052 L1PA7 6471 + 5841 6459 56978 618 chain 382704 chr5 180915260 + 30198309 30203055 HERV9-int 5642 + 0 4758 10672 358 26 26 42 13 15 32 0 1 126 9 0 9 3 0 107 6 0 70 16 20 21 38 45 235 5 4 601 0 21 421 6 5 536 0 1 1153 2 1 195 3 4 260 9 5 444 chain 3407 chr5 180915260 + 30205140 30205177 LTR12_ 688 + 454 491 216967 37 chain 5482 chr5 180915260 + 30205896 30205965 MLT2D 439 - 362 432 190199 11 0 1 58 chain 6698 chr5 180915260 + 30217150 30217228 L1PA8 5853 - 3 81 179700 78 chain 23424 chr5 180915260 + 30231356 30231713 THE1B 368 - 0 368 113509 66 0 2 108 2 0 19 2 1 63 5 2 24 24 39 44 chain 12839 chr5 180915260 + 30233198 30233484 THE1D 372 - 0 293 148890 81 6 8 34 3 0 25 13 14 16 31 34 28 28 32 21 chain 17970 chr5 180915260 + 30254195 30254635 THE1B-int 1605 - 36 1605 132939 73 170 1298 180 4 5 13 chain 23560 chr5 180915260 + 30262845 30263135 AluY 311 + 0 286 112797 73 4 0 213 chain 19659 chr5 180915260 + 30278117 30278388 L1PA7 6471 + 6202 6470 128222 87 13 9 12 1 0 4 1 0 6 0 2 91 0 1 56 chain 57698 chr5 180915260 + 30294177 30294951 MER4E 760 + 0 760 54135 24 10 9 16 11 0 106 13 11 284 14 15 68 1 0 100 1 0 4 0 1 122 chain 100108 chr5 180915260 + 30345653 30346897 LTR12C 1709 + 0 1709 36745 300 6 7 154 31 5 4 0 1 54 0 1 124 0 485 89 0 4 399 1 0 82 chain 523216 chr5 180915260 + 30359345 30365491 L1PA5 6144 - 0 6144 4847 9 4 0 18 3 4 1031 1 0 74 0 3 638 2 1 25 0 4 542 0 1 119 1 0 843 3 7 597 0 1 1056 9 0 1171 chain 550988 chr5 180915260 + 30423490 30429614 L1PA3long 6157 - 8 6157 1314 139 1 2 707 0 1 1128 0 1 2576 0 1 289 0 3 63 0 1 45 1 4 38 1 7 152 0 8 269 0 7 11 7 0 697 chain 27073 chr5 180915260 + 30441439 30441821 L1M1 2793 + 2275 2658 96026 49 7 8 277 12 13 6 1 0 30 chain 90183 chr5 180915260 + 30455737 30456915 L1PA8 5853 - 0 1216 39584 58 0 1 10 0 1 23 1 0 19 2 1 45 8 7 80 2 0 44 1 0 42 2 3 137 0 9 12 0 18 173 0 15 71 0 2 72 6 0 4 1 0 46 0 3 75 0 1 244 chain 27216 chr5 180915260 + 30476191 30476539 THE1A 353 - 0 353 95540 23 0 4 155 0 1 60 1 0 98 0 1 11 chain 117641 chr5 180915260 + 30476539 30478115 THE1A-int 1579 - 0 1579 31913 363 0 1 119 0 1 138 4 7 454 0 2 10 15 10 23 6 7 87 2 4 142 19 13 14 4 9 5 1 0 170 chain 70671 chr5 180915260 + 30484490 30486753 L1PA6 6164 - 4 2276 7577 6 2 0 104 0 1 733 0 4 48 0 1 618 1 2 521 0 3 6 0 1 224 chain 73065 chr5 180915260 + 30486759 30487719 LTR5_Hs 974 - 0 974 46997 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 557480 chr5 180915260 + 30488499 30495254 HERVK-int 6823 - 241 6823 561 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 9 4 29 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 369 0 4 3307 1 0 6 7 2 371 1 0 438 1 0 311 1 0 19 1 0 28 2 0 206 1 0 299 12 0 22 19 16 19 1 0 37 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 71146 chr5 180915260 + 30495254 30496205 LTR5_Hs 974 - 0 974 47867 43 2 1 59 20 18 19 8 15 163 1 0 188 0 1 110 0 10 57 0 1 161 5 13 115 chain 118514 chr5 180915260 + 30496205 30500000 L1PA6 6164 - 2276 6079 7577 192 1 0 378 0 1 137 1 0 798 0 1 56 2 0 506 9 10 353 0 1 493 0 1 4 1 0 50 0 4 293 4 6 37 1 0 13 1 4 465 chain 30372 chr5 180915260 + 30515599 30515942 L1PA2 6032 + 5688 6032 83734 199 1 2 143 chain 19754 chr5 180915260 + 30592765 30593043 THE1B-int 1605 - 1317 1605 127947 8 0 6 159 1 4 83 14 15 13 chain 26560 chr5 180915260 + 30598411 30598766 THE1B 368 - 0 368 97806 181 1 0 18 1 0 104 6 21 44 chain 91645 chr5 180915260 + 30599044 30600112 L1PA6 6164 - 20 1094 39073 317 0 1 457 0 5 294 chain 22248 chr5 180915260 + 30609331 30609679 THE1D 372 - 0 359 119128 4 0 1 140 1 0 6 9 11 19 24 31 95 3 4 4 0 1 43 chain 62598 chr5 180915260 + 30609976 30610687 L1PA4 6152 + 5441 6151 51631 252 1 0 458 chain 45708 chr5 180915260 + 30617114 30617725 L1PA8 5853 - 0 610 62308 92 2 1 19 3 2 44 0 1 5 15 14 68 3 1 17 0 2 25 1 0 167 0 2 150 chain 48025 chr5 180915260 + 30622134 30622709 L1PA7 6471 - 1062 1641 60326 460 2 0 44 0 6 69 chain 85051 chr5 180915260 + 30622709 30623749 L1PA7 6471 + 5407 6469 41496 215 0 6 320 5 26 487 5 0 8 chain 4634 chr5 180915260 + 30625791 30625845 LOR1a 498 - 16 70 199255 54 chain 34358 chr5 180915260 + 30660474 30660847 L1PA4 6152 + 5779 6152 77119 373 chain 16275 chr5 180915260 + 30673853 30674063 L1PA6 6164 + 5943 6162 137539 13 0 8 38 1 2 158 chain 61424 chr5 180915260 + 30679855 30680629 THE1B-int 1605 + 819 1592 52141 6 7 0 530 0 1 163 0 5 68 chain 28565 chr5 180915260 + 30696856 30697170 L1PA4 6152 + 5827 6141 90896 314 chain 33374 chr5 180915260 + 30702316 30702695 L1PA4 6152 + 5772 6152 78611 231 1 2 147 chain 73231 chr5 180915260 + 30704319 30705317 MER11A 1151 - 15 1151 46911 45 8 7 225 7 41 15 1 0 56 0 4 53 6 8 123 1 0 21 3 5 92 0 1 28 1 0 23 0 1 87 12 12 134 0 98 57 chain 180121 chr5 180915260 + 30709135 30711174 L1PA4 6152 + 4112 6152 20980 523 1 0 665 0 1 721 0 1 129 chain 18186 chr5 180915260 + 30711239 30711476 MSTB-int 1649 + 1383 1619 132369 152 1 0 84 chain 9688 chr5 180915260 + 30715784 30715969 MER47A 366 + 9 224 162163 24 43 71 13 0 3 38 1 0 66 chain 10041 chr5 180915260 + 30727710 30727909 L1P4 1494 + 1251 1444 160374 99 1 0 16 52 47 31 chain 507900 chr5 180915260 + 30775249 30781640 L1PA7 6471 + 3 6463 6331 266 1 4 31 0 1 214 3 4 84 2 0 281 4 0 10 3 7 81 1 0 4 6 4 743 0 6 352 7 9 24 0 17 344 1 0 25 12 14 11 0 1 99 11 13 49 2 0 39 4 7 291 4 3 795 1 0 649 0 2 179 0 12 91 0 14 23 0 4 64 1 0 695 0 1 53 0 9 78 2 0 56 5 6 54 1 2 104 0 1 54 2 0 272 0 1 203 chain 32080 chr5 180915260 + 30814916 30815362 MLT2A1 477 - 0 477 80722 52 11 45 19 6 0 6 0 6 180 5 2 167 chain 557118 chr5 180915260 + 30818076 30824103 L1PA2 6032 - 1 6028 598 6027 chain 61963 chr5 180915260 + 30832933 30833753 L1PA10 4194 + 3345 4150 51915 341 0 8 166 16 0 196 34 30 30 3 0 34 chain 100243 chr5 180915260 + 30859911 30861002 L1PA2 6032 + 4939 6032 36711 62 0 2 1029 chain 3796 chr5 180915260 + 30876022 30876075 L1PA7 6471 + 6398 6452 210443 26 3 4 24 chain 4380 chr5 180915260 + 30909707 30909762 L1PA7 6471 + 5825 5880 202194 55 chain 34835 chr5 180915260 + 30909777 30910195 L1PA7 6471 + 5898 6319 76427 52 0 2 26 0 1 340 chain 11065 chr5 180915260 + 30910214 30910340 L1PA7 6471 + 6340 6466 155943 126 chain 6258 chr5 180915260 + 30924403 30924695 MSTD 398 - 0 289 183100 61 60 57 20 129 129 22 chain 10613 chr5 180915260 + 30928145 30928294 MLT1B 390 - 0 143 157759 31 7 1 111 chain 533286 chr5 180915260 + 30947864 30954233 L1PA5 6144 + 2 6144 3809 262 0 1 167 1 0 132 6 5 1317 0 1 80 0 1 42 238 12 172 0 2 109 15 1 858 2 0 1182 1 5 306 0 1 639 0 4 314 0 1 514 1 3 11 chain 19528 chr5 180915260 + 30949889 30950109 L1PA5 6144 - 5389 5609 127836 220 chain 48000 chr5 180915260 + 30991774 30992476 LTR8 732 + 31 732 60490 9 6 0 111 3 7 47 12 13 225 0 1 4 1 0 43 0 2 5 1 0 6 0 5 6 38 32 38 1 0 4 0 1 142 chain 10004 chr5 180915260 + 31000849 31000991 MER44A 345 - 82 237 160565 41 0 6 32 6 13 63 chain 191760 chr5 180915260 + 31002618 31005311 L1PB1 5432 - 829 3548 19889 76 0 4 35 5 6 118 16 19 141 17 7 32 1 0 137 9 0 296 2 5 23 0 5 137 0 1 256 15 20 270 9 8 65 0 13 94 0 1 18 0 9 29 8 10 45 0 1 58 4 5 26 15 15 125 5 0 62 1 7 109 2 3 152 0 1 194 7 0 51 0 2 28 chain 65603 chr5 180915260 + 31005361 31006141 L1PA7 6471 - 2 786 50292 390 0 1 265 0 2 101 0 1 24 chain 16254 chr5 180915260 + 31010139 31010462 THE1D 372 + 0 333 137600 15 0 2 32 9 0 25 3 0 6 18 22 36 0 1 26 58 73 95 chain 10731 chr5 180915260 + 31020281 31020440 L1PB4 2604 + 2408 2570 157275 14 4 0 22 0 4 103 2 5 14 chain 37274 chr5 180915260 + 31022039 31022558 L1PA8 5853 - 0 525 73126 40 0 4 45 24 30 35 2 0 10 1 0 10 2 1 70 2 0 44 1 0 187 1 4 45 chain 173810 chr5 180915260 + 31038547 31040610 L1PA7 6471 + 4395 6470 21611 92 0 1 1135 0 6 147 7 11 633 4 5 45 chain 172559 chr5 180915260 + 31040615 31043430 L1PB1 5432 + 2824 5430 21755 18 10 7 37 0 3 20 20 24 74 0 4 7 13 9 120 1 2 61 14 15 44 2 1 85 15 14 4 0 1 108 0 1 244 7 6 260 1 0 475 17 22 109 4 5 22 4 0 123 0 1 4 1 0 43 2 1 305 1 2 9 182 0 24 1 0 4 3 2 12 19 13 51 2 1 15 1 0 44 1 0 7 77 60 23 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 122787 chr5 180915260 + 31073717 31075285 THE1A-int 1579 - 0 1579 30121 9 1 2 114 2 3 319 2 3 483 17 18 287 1 5 67 0 3 266 chain 26509 chr5 180915260 + 31080550 31080903 THE1A 353 - 0 353 98012 112 0 1 4 1 0 126 4 3 24 0 1 82 chain 18379 chr5 180915260 + 31081879 31082094 AluSc 308 + 64 279 131848 215 chain 26955 chr5 180915260 + 31109365 31109691 LTR17 781 - 456 781 96428 16 10 0 181 0 9 119 chain 88706 chr5 180915260 + 31110026 31111163 L1PA8 5853 + 4718 5853 40109 291 2 0 78 1 0 6 4 2 8 0 10 451 1 0 46 2 0 68 2 1 8 2 1 16 12 11 25 2 1 19 1 0 8 5 6 79 chain 13482 chr5 180915260 + 31178206 31178369 MSTA 426 + 239 402 146406 163 chain 63840 chr5 180915260 + 31203353 31204044 L1PA2 6032 - 0 691 51082 691 chain 27988 chr5 180915260 + 31253271 31253646 THE1C 375 + 2 375 93044 11 2 0 83 1 2 84 3 4 52 1 0 112 1 0 25 chain 51661 chr5 180915260 + 31258145 31258755 L1PA7 6471 + 5861 6469 57855 598 2 0 10 chain 13697 chr5 180915260 + 31263156 31263363 MSTC 436 - 0 221 145608 86 7 10 65 0 18 31 7 0 11 chain 5540 chr5 180915260 + 31271853 31271945 MER5A1 166 + 44 134 189663 42 11 10 8 1 0 30 chain 21037 chr5 180915260 + 31275524 31275798 L1PA16 3655 - 117 389 123779 247 7 5 20 chain 15264 chr5 180915260 + 31314263 31314433 L1PA5 6144 - 4 175 140588 14 0 1 156 chain 6573 chr5 180915260 + 31317190 31317302 MER20 218 + 64 174 180673 13 6 12 69 8 0 16 chain 1777 chr5 180915260 + 31351093 31351195 MLT1B 390 + 23 124 155038 64 1 0 37 chain 24647 chr5 180915260 + 31351230 31351521 AluSp 311 + 0 293 106733 130 0 2 161 chain 1324 chr5 180915260 + 31351666 31351742 MLT1B 390 + 301 375 155038 54 3 1 19 chain 45324 chr5 180915260 + 31361851 31362462 MER41B 635 - 24 635 62690 102 1 2 25 35 31 164 0 2 156 0 1 128 chain 12953 chr5 180915260 + 31363651 31363805 MER41A 554 - 2 161 148417 81 0 5 73 chain 9582 chr5 180915260 + 31372079 31372223 L1PA8 5853 + 5709 5853 162681 33 1 0 18 2 1 57 2 4 31 chain 25898 chr5 180915260 + 31389937 31390267 MSTA-int 1630 - 1261 1591 100452 118 2 3 58 1 0 151 chain 13123 chr5 180915260 + 31390313 31390483 MSTA 426 - 12 177 147750 43 4 0 94 1 0 28 chain 146537 chr5 180915260 + 31395292 31397055 HERV17-int 4347 - 472 4334 25086 98 0 1 41 0 1672 465 1 0 119 0 1 10 3 0 120 0 1 58 1 0 117 0 3 264 0 2 138 0 430 64 1 0 132 1 0 27 2 0 34 2 1 50 1 0 14 chain 37999 chr5 180915260 + 31397957 31398513 HERVK14-int 1672 - 1097 1667 72134 7 2 0 183 0 1 50 2 0 11 13 23 23 0 4 21 0 3 24 0 3 84 0 1 49 1 0 6 2 1 4 0 1 35 6 4 7 1 0 25 chain 39588 chr5 180915260 + 31449967 31450640 L1PB3 3668 + 2898 3527 69907 86 0 1 2 3 0 17 10 0 78 5 7 59 0 1 5 14 6 42 9 10 20 3 0 5 18 12 48 1 0 94 1 0 83 24 8 21 1 0 24 chain 22721 chr5 180915260 + 31469219 31469489 AluSg 306 + 36 306 116975 270 chain 5943 chr5 180915260 + 31474795 31475034 MLT1A0 366 + 62 299 185759 25 11 12 44 133 130 26 chain 27687 chr5 180915260 + 31484197 31484515 AluYb8 318 + 1 316 94089 125 3 0 190 chain 7560 chr5 180915260 + 31505790 31505893 HY3 101 + 0 100 173804 86 3 0 14 chain 24396 chr5 180915260 + 31536352 31536646 AluY 311 + 7 299 108097 124 2 0 168 chain 33023 chr5 180915260 + 31548426 31548836 THE1B-int 1605 - 1185 1605 79180 82 0 2 258 0 8 70 chain 22055 chr5 180915260 + 31564391 31564736 THE1C 375 - 21 366 120000 103 39 35 12 21 25 170 chain 112722 chr5 180915260 + 31565128 31566599 THE1C-int 1605 - 50 1589 33472 119 2 1 4 0 1 136 11 18 515 13 7 57 0 1 5 12 11 39 0 1 188 0 7 239 0 2 51 0 57 80 chain 22157 chr5 180915260 + 31584448 31584700 AluSx 319 + 8 260 119557 252 chain 19180 chr5 180915260 + 31588274 31588561 LTR9 672 - 383 672 129583 108 1 0 53 1 0 63 31 35 30 chain 23447 chr5 180915260 + 31592150 31592427 AluSp 311 - 13 291 113393 16 0 1 261 chain 163621 chr5 180915260 + 31615386 31617355 L1PA6 6164 - 2 1965 22857 330 0 1 130 4 0 103 0 5 36 0 3 240 4 0 111 3 0 6 0 3 320 2 1 296 8 2 376 chain 29226 chr5 180915260 + 31660480 31660857 THE1C 375 - 0 375 87928 194 0 1 55 3 0 125 chain 109116 chr5 180915260 + 31691124 31692635 LTR12C 1709 - 0 1709 34414 84 14 13 366 135 5 13 0 4 106 2 0 6 1 0 27 0 1 57 0 278 326 1 2 40 0 43 58 1 6 274 chain 2540 chr5 180915260 + 31691671 31691700 LTR12C 1709 - 434 463 232659 29 chain 3175 chr5 180915260 + 31694914 31694948 MER41A 554 - 90 124 221434 34 chain 32383 chr5 180915260 + 31703322 31703737 L1PA8 5853 + 5433 5844 80216 131 1 0 45 2 0 73 1 0 11 1 0 47 2 1 9 0 1 9 1 0 21 0 2 61 chain 21651 chr5 180915260 + 31707168 31707404 L1PA5 6144 + 5892 6128 121565 236 chain 8262 chr5 180915260 + 31713996 31714125 MSTB1 431 + 302 429 169613 18 17 14 81 0 1 13 chain 22120 chr5 180915260 + 31736815 31737207 MSTB 430 + 4 428 119700 20 6 23 75 0 1 43 7 0 35 69 85 15 0 5 122 chain 26207 chr5 180915260 + 31740353 31740660 AluY 311 + 8 311 99171 116 4 0 187 chain 5091 chr5 180915260 + 31761611 31761684 MSTA 426 - 0 70 194161 5 2 0 61 1 0 4 chain 3671 chr5 180915260 + 31778247 31778287 LTR12C 1709 + 688 728 212369 40 chain 26791 chr5 180915260 + 31790798 31791104 AluYk4 311 - 5 311 97011 306 chain 5729 chr5 180915260 + 31820672 31820736 U6 107 - 31 95 187845 64 chain 39065 chr5 180915260 + 31821803 31822327 L1PA8 5853 - 4 523 70645 77 13 12 19 2 1 21 0 1 39 2 1 70 2 0 46 6 5 227 chain 6273 chr5 180915260 + 31824684 31824761 U13 108 + 0 77 182980 77 chain 5052 chr5 180915260 + 31828942 31829017 L1MB8 1703 - 794 867 194611 40 3 1 32 chain 14964 chr5 180915260 + 31834823 31834994 L1PA5 6144 + 5966 6137 141435 171 chain 28054 chr5 180915260 + 31878661 31878966 AluYf4 310 - 6 310 92811 172 1 0 132 chain 25001 chr5 180915260 + 31970015 31970300 AluSp 311 - 23 311 104774 194 0 3 91 chain 6426 chr5 180915260 + 31974886 31974976 AluJb 308 + 11 236 181817 50 2 137 38 chain 25845 chr5 180915260 + 31985902 31986204 AluSp 311 + 0 304 100673 91 0 3 182 2 1 27 chain 13453 chr5 180915260 + 31998744 31998935 MER30 238 - 7 212 146518 37 3 0 63 7 25 76 1 0 4 chain 154649 chr5 180915260 + 32039228 32041953 SVA_A 1864 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32119159 AluSg7 307 - 14 307 111406 13 5 7 141 0 1 131 chain 160526 chr5 180915260 + 32141682 32143559 SVA_D 2077 + 12 2065 23265 34 3 0 295 2 0 383 0 3 34 3 0 147 2 0 10 2 0 25 47 7 84 2 4 15 2 1 160 0 224 627 chain 3940 chr5 180915260 + 32142622 32142669 SVA_D 2077 + 1257 1304 62255 47 chain 24057 chr5 180915260 + 32148631 32148917 AluY 311 + 10 297 109999 122 0 1 164 chain 8021 chr5 180915260 + 32150724 32150866 Tigger4a 237 - 0 157 170933 31 27 26 33 0 16 51 chain 19330 chr5 180915260 + 32179472 32179694 AluSc 308 - 86 308 129142 222 chain 23271 chr5 180915260 + 32182146 32182425 AluY 311 + 12 292 114336 120 0 1 159 chain 30023 chr5 180915260 + 32185635 32185950 AluYb8 318 + 0 315 84733 315 chain 6200 chr5 180915260 + 32187733 32188216 L1M3 994 + 298 740 183581 58 385 344 40 chain 24645 chr5 180915260 + 32189893 32190197 AluY 311 + 6 311 106750 120 1 2 183 chain 133941 chr5 180915260 + 32207708 32209761 SVA_F 1814 + 335 1814 27227 502 6 6 37 1 0 68 2 17 126 50 0 90 538 0 633 chain 2303 chr5 180915260 + 32208450 32208475 SVA_F 1814 + 1267 1291 135485 7 1 0 17 chain 3760 chr5 180915260 + 32208590 32208675 SVA_F 1814 + 1005 1090 130675 85 chain 27785 chr5 180915260 + 32208773 32209090 SVA_F 1814 + 963 1274 93752 33 2 0 15 1 0 143 0 1 15 3 0 17 1 0 87 chain 3255 chr5 180915260 + 32209090 32209127 SVA_F 1814 + 971 1005 155552 25 3 0 9 chain 35692 chr5 180915260 + 32214330 32214793 L1PA8 5853 - 0 455 75281 93 1 0 19 2 1 61 2 1 67 5 0 47 1 0 108 0 1 57 chain 23739 chr5 180915260 + 32215643 32215940 AluSp 311 + 1 295 111836 70 4 1 223 chain 17174 chr5 180915260 + 32216327 32216561 MER1B 344 + 39 264 135098 179 14 5 41 chain 12409 chr5 180915260 + 32244932 32245115 HSMAR2 1300 - 1 208 150602 17 4 5 5 1 0 73 11 35 72 chain 23340 chr5 180915260 + 32251160 32251411 AluYa5 310 - 10 285 113983 208 0 24 43 chain 458354 chr5 180915260 + 32287701 32293275 HERVL-int 5654 + 0 5654 8461 117 21 20 231 11 0 375 0 3 139 4 9 1043 0 3 38 0 1 4 1 0 121 1 4 242 0 3 38 0 4 345 1 19 286 5 15 295 0 3 50 0 1 93 0 4 113 0 2 59 1 2 300 2 1 384 0 4 447 6 0 6 0 6 72 0 3 136 0 1 176 2 0 179 2 23 14 0 1 10 0 5 204 chain 31156 chr5 180915260 + 32293275 32293701 MLT2A1 477 + 0 459 82242 140 0 1 27 1 5 22 2 1 129 1 0 59 2 1 9 4 35 30 chain 26534 chr5 180915260 + 32298772 32299077 AluY 311 + 0 301 97913 126 4 0 175 chain 23244 chr5 180915260 + 32309428 32309767 L1MA3 4352 + 3183 3526 114467 155 0 4 54 6 7 22 0 1 35 0 10 5 12 0 50 chain 9224 chr5 180915260 + 32309767 32309874 U6 107 + 0 107 164432 107 chain 30239 chr5 180915260 + 32317892 32318287 MLT2A1 477 - 85 477 84088 7 3 0 55 1 0 126 0 1 23 0 1 8 3 0 78 0 1 21 0 1 70 chain 35885 chr5 180915260 + 32321768 32322601 LOR1a 498 - 0 498 75026 69 1 2 26 4 5 83 2 1 244 338 1 22 0 1 44 chain 17083 chr5 180915260 + 32334338 32334582 MER57A1 433 - 187 433 135374 119 20 18 21 0 4 84 chain 60897 chr5 180915260 + 32336118 32336857 MER4E1 777 - 7 759 52389 68 4 5 80 1 0 67 0 7 385 5 10 32 0 1 97 chain 10873 chr5 180915260 + 32338109 32338239 MER57-int 2662 - 2426 2559 156687 60 0 2 66 0 1 4 chain 4865 chr5 180915260 + 32345733 32345789 MER41-int 2638 + 363 419 196643 56 chain 46412 chr5 180915260 + 32347346 32348014 MER41-int 2638 + 1975 2634 61674 58 6 4 48 1 2 5 1 0 9 5 0 14 3 5 58 4 0 13 3 0 103 0 1 159 0 1 75 8 7 62 7 9 26 chain 14695 chr5 180915260 + 32350353 32350516 L1PA4 6152 + 5975 6138 142280 163 chain 13441 chr5 180915260 + 32359351 32359529 MER30 238 + 50 238 146548 57 4 0 17 0 14 100 chain 4580 chr5 180915260 + 32394577 32394632 L1MB8 1703 + 1524 1579 199868 55 chain 12874 chr5 180915260 + 32417019 32417172 L1PA5 6144 - 0 160 148732 138 0 7 15 chain 5607 chr5 180915260 + 32457898 32457964 MSTB 430 + 0 66 189010 66 chain 26467 chr5 180915260 + 32459898 32460569 THE1D-int 1627 - 1260 1627 98180 22 0 1 20 307 0 129 0 6 152 10 6 31 chain 11724 chr5 180915260 + 32462204 32462510 MSTD 398 + 29 398 153365 35 125 191 82 9 6 55 chain 13821 chr5 180915260 + 32466079 32466249 AluSp 311 + 135 305 145175 34 0 1 27 1 0 108 chain 13598 chr5 180915260 + 32477680 32478656 L1MB3 1562 + 1238 1555 145982 113 1 0 54 758 101 18 8 7 24 chain 3461 chr5 180915260 + 32481586 32481625 Ricksha_c 1012 + 93 132 215994 39 chain 29077 chr5 180915260 + 32491965 32492330 MER50 708 - 22 385 88653 202 1 0 118 2 1 42 chain 32651 chr5 180915260 + 32500228 32500807 LTR9B 643 + 41 628 79760 26 4 6 10 20 28 90 3 0 5 14 20 185 42 40 55 1 0 69 30 28 25 chain 4368 chr5 180915260 + 32507464 32507516 MER5A 189 - 109 161 202340 52 chain 119860 chr5 180915260 + 32515899 32517198 L1PA3long 6157 - 1 1300 31100 1299 chain 29325 chr5 180915260 + 32536529 32536993 MER1A 529 + 43 529 87412 37 23 63 300 8 9 9 10 0 4 7 0 20 16 14 30 chain 8119 chr5 180915260 + 32552866 32552953 LTR12D 1347 - 824 911 170384 87 chain 364557 chr5 180915260 + 32554596 32558999 HERV9-int 5642 - 822 5150 11241 104 0 2 117 0 5 352 0 1 24 57 57 3051 84 0 316 1 0 90 9 10 146 0 1 52 chain 17047 chr5 180915260 + 32560689 32562470 MER34D 576 - 37 294 135468 8 1 0 149 1513 0 52 9 0 23 1 0 25 chain 14009 chr5 180915260 + 32561981 32562139 AluYc 301 + 137 295 144548 158 chain 23503 chr5 180915260 + 32580975 32581249 AluSc5 308 - 34 308 113119 274 chain 10285 chr5 180915260 + 32587200 32587327 MER85 139 + 2 139 159209 85 0 10 42 chain 15184 chr5 180915260 + 32594715 32594981 MER1B 344 + 69 333 140815 129 12 5 26 51 56 48 chain 29401 chr5 180915260 + 32623530 32623934 MER51B 395 + 0 395 87071 24 27 15 92 0 1 113 1 0 8 5 0 7 0 6 17 0 2 110 chain 111888 chr5 180915260 + 32656761 32658297 THE1B-int 1605 - 31 1605 33696 174 0 1 154 9 21 51 1 0 250 1 2 157 84 79 218 10 35 280 0 2 18 0 2 71 0 1 58 chain 185596 chr5 180915260 + 32658991 32661357 L1PA8 5853 - 0 2379 20455 5 0 1 51 0 4 32 1 0 17 6 5 50 1 0 9 3 2 7 1 0 8 0 8 42 8 6 42 1 0 49 1 0 171 1 2 254 5 6 72 2 0 26 1 0 36 10 11 170 0 1 789 6 14 489 chain 27990 chr5 180915260 + 32672111 32672449 LTR14A 344 - 0 344 93035 74 0 2 87 6 10 171 chain 67853 chr5 180915260 + 32672676 32673752 LTR12D 1347 - 0 1347 49306 148 0 200 264 1 83 84 1 32 77 0 1 87 214 171 200 chain 125177 chr5 180915260 + 32674925 32676418 HERV9-int 5642 - 827 4532 29330 46 0 2211 920 0 1 527 chain 6569 chr5 180915260 + 32676505 32676584 HERV9-int 5642 - 4535 4614 180711 79 chain 28907 chr5 180915260 + 32676585 32676933 HERV9-int 5642 - 4535 4882 89432 316 1 0 31 chain 61384 chr5 180915260 + 32676934 32677669 HERV9-int 5642 - 4888 5625 52159 215 1 2 187 0 1 332 chain 4118 chr5 180915260 + 32678312 32678364 LTR12D 1347 - 835 887 205677 52 chain 32537 chr5 180915260 + 32685700 32686104 L1PA7 6471 - 2 402 79963 5 3 0 5 2 0 320 0 1 69 chain 250693 chr5 180915260 + 32695674 32699333 L1MA3 4352 - 657 4352 16200 11 0 1 385 11 13 58 11 10 78 1 3 36 0 23 283 5 0 159 0 1 264 0 4 7 8 9 4 0 1 32 1 0 74 1 5 48 0 10 113 27 24 95 4 0 6 4 8 155 87 78 46 1 0 123 1 0 159 7 9 235 2 0 15 1 0 29 1 0 32 0 1 113 0 1 60 1 0 6 4 0 9 0 1 4 1 0 31 4 18 32 2 0 220 4 6 96 0 5 54 0 1 85 2 0 82 1 0 41 0 2 5 4 1 19 1 0 81 0 1 33 29 26 15 chain 68020 chr5 180915260 + 32700507 32701288 L1PA6 6164 - 2 783 49239 781 chain 68938 chr5 180915260 + 32702367 32703138 L1PA3long 6157 - 0 769 48843 259 9 7 503 chain 24759 chr5 180915260 + 32705445 32705867 MSTA 426 - 0 426 106114 118 1 0 59 48 43 47 9 15 15 1 0 15 0 4 6 13 14 90 chain 194852 chr5 180915260 + 32716956 32719299 L1PA6 6164 - 2 2340 19595 145 2 1 13 7 0 176 1 2 258 2 0 524 1 0 151 6 23 366 21 10 22 2 5 394 4 0 248 chain 28600 chr5 180915260 + 32729124 32729434 AluYa5 310 - 0 310 90730 310 chain 30174 chr5 180915260 + 32732065 32732383 AluYb8 318 + 0 318 84257 318 chain 19568 chr5 180915260 + 32738244 32738484 L1PA7 6471 - 2 243 128466 10 2 0 131 1 0 5 0 1 86 0 3 5 chain 376057 chr5 180915260 + 32755911 32760141 L1PA5 6144 - 200 4432 10883 234 0 1 62 0 1 87 1 0 1208 1 5 671 1 0 499 1 0 1112 1 0 352 chain 123701 chr5 180915260 + 32761900 32763393 L1PA7 6471 - 1 1455 29811 339 4 3 428 0 2 31 40 1 45 1 0 605 chain 3822 chr5 180915260 + 32763750 32763798 L1MEb 951 - 238 286 210055 48 chain 376213 chr5 180915260 + 32795928 32801326 L1PA8A 6298 + 962 6291 10877 22 168 193 62 85 85 325 1 0 254 8 5 90 1 0 118 15 21 81 0 1 286 23 6 325 2 1 442 25 0 485 30 0 114 6 7 98 0 1 55 0 1 40 4 0 459 0 4 125 64 0 40 19 2 115 1 0 581 5 6 76 0 3 149 0 71 12 0 2 478 41 20 68 chain 16858 chr5 180915260 + 32801827 32802128 THE1B 368 - 62 368 135948 61 4 3 12 53 58 58 8 9 105 chain 41150 chr5 180915260 + 32804521 32805078 LTR12F 595 - 33 595 67716 315 22 4 28 14 38 31 2 0 40 2 3 103 chain 26344 chr5 180915260 + 32815044 32815389 THE1A 353 + 2 350 98640 6 0 1 103 6 8 230 chain 90250 chr5 180915260 + 32815392 32816559 THE1A-int 1579 + 0 1175 39559 361 7 6 122 1 0 129 4 5 168 0 1 69 0 1 126 17 20 85 22 26 56 chain 196587 chr5 180915260 + 32822633 32824726 L1HS 6032 - 0 2093 19444 2093 chain 317533 chr5 180915260 + 32824726 32828098 L1HS 6032 + 579 3951 12698 3372 chain 7326 chr5 180915260 + 32866736 32866825 MER5A 189 - 78 167 175257 89 chain 18163 chr5 180915260 + 32872844 32873175 THE1C 375 + 0 335 132429 27 1 0 12 69 75 72 12 11 138 chain 7969 chr5 180915260 + 32876319 32876485 L1MA5A 2387 - 13 155 171225 15 2 0 19 1 0 10 1 0 13 34 15 7 1 0 63 chain 20392 chr5 180915260 + 32876567 32876937 MER1B 344 + 50 344 125919 106 82 11 98 17 12 67 chain 124265 chr5 180915260 + 32878488 32879937 L1PA6 6164 + 4697 6149 29603 192 4 8 270 1 0 982 chain 518657 chr5 180915260 + 32892972 32899430 L1PA7 6471 - 14 6471 5315 136 0 5 11 7 0 128 6 7 39 1 0 258 0 17 10 40 4 4 0 1 125 5 3 88 2 1 127 0 1 870 0 1 618 1 0 3 1 0 15 1 0 4 0 1 28 1 0 265 2 1 316 14 16 250 0 4 1897 1 0 207 3 19 348 7 8 16 0 1 193 6 7 404 chain 95441 chr5 180915260 + 32907237 32908389 L1PA6 6164 - 2 1125 37974 12 3 0 757 1 3 154 29 1 196 chain 26438 chr5 180915260 + 32911398 32911686 L1PA2 6032 - 1004 1292 96318 288 chain 95836 chr5 180915260 + 32911686 32912717 L1PA2 6032 + 5001 6032 37865 1031 chain 5701 chr5 180915260 + 32922203 32922280 L1PB1 5432 - 12 86 188098 16 1 0 13 1 0 21 1 0 24 chain 32560 chr5 180915260 + 32922419 32922782 L1P1 4361 + 3539 3902 79925 363 chain 39008 chr5 180915260 + 32926891 32927315 L1PA2 6032 + 5608 6032 70731 424 chain 117336 chr5 180915260 + 32931035 32932376 L1PA4 6152 - 0 1358 32014 7 0 11 95 0 1 737 1 0 322 5 6 164 0 5 10 chain 39796 chr5 180915260 + 32936860 32937324 L1PA5 6144 - 7 462 69630 144 6 0 61 3 0 250 chain 28786 chr5 180915260 + 32945965 32946294 L1PA4 6152 - 1 330 89959 329 chain 58578 chr5 180915260 + 32951768 32953106 MER4E1 777 + 0 769 53657 146 578 0 8 0 5 262 0 1 13 0 4 60 0 4 40 16 8 165 0 3 50 chain 3288 chr5 180915260 + 32968292 32968344 MADE1 96 + 45 96 219217 25 3 2 24 chain 6443 chr5 180915260 + 32974571 32974693 L1MC2 1988 - 1856 1969 181685 40 34 25 48 chain 23819 chr5 180915260 + 32983125 32983414 AluY 311 + 16 307 111364 116 0 1 148 0 1 25 chain 54992 chr5 180915260 + 32985592 32986372 L1PB1 5432 + 4441 5220 55710 32 2 0 49 1 3 101 4 0 270 0 12 15 1 0 16 0 1 97 1 2 61 16 14 24 10 8 10 7 3 10 2 0 51 chain 3431 chr5 180915260 + 33014772 33014811 L1M3c 1411 - 958 997 216544 39 chain 115492 chr5 180915260 + 33019404 33020676 L1PA3long 6157 + 4872 6149 32608 577 0 5 695 chain 152262 chr5 180915260 + 33027782 33029942 L1PB1 5432 + 3305 5392 24305 424 0 7 15 4 0 231 0 1 186 1 0 339 0 4 115 3 0 60 1 0 107 0 8 15 7 1 264 80 32 24 9 6 14 16 10 52 3 2 14 1 0 45 1 0 15 31 19 12 2 0 5 1 0 14 2 0 27 1 0 19 chain 27808 chr5 180915260 + 33035409 33035708 AluYa5 310 - 14 310 93671 208 3 0 88 chain 22540 chr5 180915260 + 33048385 33048695 MER1B 344 - 5 314 117849 53 16 19 51 4 0 186 chain 7450 chr5 180915260 + 33057428 33057510 L1PA2 6032 - 18 100 174441 82 chain 57832 chr5 180915260 + 33057522 33058154 L1PA2 6032 + 5289 5921 54071 632 chain 32896 chr5 180915260 + 33059486 33059917 L1PA8 5853 + 5428 5853 79378 129 8 7 46 2 0 68 2 1 61 2 1 19 1 0 93 chain 167852 chr5 180915260 + 33083450 33085397 L1PA6 6164 + 4214 6162 22298 347 1 0 1188 0 1 82 1 0 160 1 2 9 2 9 14 6 0 136 chain 12216 chr5 180915260 + 33090501 33090678 L1PA16 3655 - 774 949 151358 61 3 4 77 2 0 11 1 0 22 chain 539536 chr5 180915260 + 33096014 33102153 L1PA4 6152 - 0 6151 2896 13 0 3 623 1 8 301 0 1 656 1 0 608 0 1 2893 0 2 463 1 0 579 chain 10548 chr5 180915260 + 33122337 33122458 AluJr4 308 + 164 285 158053 121 chain 555914 chr5 180915260 + 33122476 33128501 L1PA2 6032 + 0 6031 732 918 1 0 2290 0 7 2816 chain 10747 chr5 180915260 + 33130467 33130590 L1PA2 6032 - 7 128 157212 6 2 0 115 chain 19240 chr5 180915260 + 33130793 33131122 THE1B 368 + 0 368 129411 44 11 42 86 2 1 28 32 42 34 12 11 80 chain 5317 chr5 180915260 + 33156061 33156123 L1PA16 3655 + 2019 2081 191854 62 chain 27123 chr5 180915260 + 33156599 33156958 L1P4 1494 - 142 501 95854 160 1 0 128 3 4 67 chain 169780 chr5 180915260 + 33164358 33166967 L1PBa 3878 - 222 3777 22077 135 6 538 70 6 571 59 0 2 367 10 13 231 1 0 56 26 19 201 0 28 345 2 1 170 0 4 71 0 3 7 3 2 77 2 0 128 13 18 17 1 0 8 14 29 6 0 3 240 2 0 11 16 0 8 139 5 48 79 30 34 chain 118574 chr5 180915260 + 33171643 33172970 L1PA4 6152 + 4826 6152 31593 992 2 1 333 chain 24090 chr5 180915260 + 33189890 33190179 L1PA4 6152 - 0 313 109798 148 0 13 129 0 11 12 chain 62441 chr5 180915260 + 33192090 33192781 L1PA4 6152 - 0 692 51702 599 0 1 92 chain 28770 chr5 180915260 + 33200866 33201170 AluYa5 310 - 6 310 90015 304 chain 16352 chr5 180915260 + 33209848 33210061 Tigger1 2417 + 2103 2317 137337 146 0 2 61 1 0 5 chain 42233 chr5 180915260 + 33210068 33210623 MLT2A2 560 - 0 560 66359 84 7 8 259 4 5 93 1 2 56 0 2 51 chain 3394 chr5 180915260 + 33256258 33256300 L1MC4 1079 - 298 339 217194 13 1 0 28 chain 98563 chr5 180915260 + 33262383 33263535 L1PA4 6152 + 5029 6151 37133 411 4 0 346 34 7 104 0 1 253 chain 13243 chr5 180915260 + 33263549 33263715 THE1B 368 - 28 193 147313 49 1 0 116 chain 15719 chr5 180915260 + 33278588 33278761 L1P1 4361 - 1406 1579 138372 173 chain 173020 chr5 180915260 + 33278761 33280670 L1PA3long 6157 + 4237 6147 21706 977 1 0 679 5 6 229 0 1 18 chain 7274 chr5 180915260 + 33298315 33298403 LTR39 781 + 643 731 175624 88 chain 52135 chr5 180915260 + 33341797 33342392 L1PA7 6471 - 4 600 57536 102 0 1 493 chain 53269 chr5 180915260 + 33342392 33343049 L1P3 4156 + 3488 4139 56845 12 1 0 26 2 1 401 2 1 178 2 0 6 1 0 26 chain 500304 chr5 180915260 + 33348277 33354357 L1PA6 6164 - 4 6125 6818 6 2 0 234 0 1 41 0 1 44 5 6 515 1 0 808 0 1 138 0 4 1060 0 1 109 6 9 855 3 4 335 0 1 748 11 12 268 3 28 151 0 4 266 2 1 158 11 11 15 10 10 47 19 19 47 4 5 158 chain 30192 chr5 180915260 + 33355576 33355894 AluYb8 318 - 0 318 84220 318 chain 15090 chr5 180915260 + 33356681 33356895 AluSq2 311 + 85 296 141060 42 1 0 6 10 11 146 3 0 6 chain 116534 chr5 180915260 + 33359404 33361276 THE1B-int 1605 - 0 1605 32274 85 322 0 31 9 5 81 3 4 387 2 0 282 7 9 48 12 44 83 0 1 88 0 25 114 10 17 279 7 0 22 chain 6025 chr5 180915260 + 33366865 33366948 Tigger1 2417 - 109 190 185026 57 1 0 18 1 0 6 chain 32504 chr5 180915260 + 33377015 33377458 MLT2A1 477 - 0 477 80017 8 0 4 7 1 0 20 4 0 7 12 50 211 4 1 169 chain 22695 chr5 180915260 + 33387761 33388036 AluSx4 309 + 14 288 117101 248 1 0 26 chain 510746 chr5 180915260 + 33388796 33394972 L1PA6 6164 + 0 6161 6092 237 0 2 5 1 2 272 0 2 43 11 10 310 0 1 315 0 1 246 0 1 507 1 0 87 0 1 289 2 3 1355 31 9 553 7 8 176 6 9 867 0 4 205 11 0 34 0 1 447 10 11 148 chain 87611 chr5 180915260 + 33404275 33405346 L1PA8A 6298 + 5214 6291 40530 275 9 10 131 9 12 39 0 2 493 0 7 7 7 0 101 chain 2893 chr5 180915260 + 33431285 33431316 MER58A 224 + 50 81 227160 31 chain 55299 chr5 180915260 + 33436278 33436902 L1PA5 6144 - 653 1280 55520 190 0 4 208 1 0 225 chain 58895 chr5 180915260 + 33436920 33437574 L1PA5 6144 + 5484 6138 53462 654 chain 9823 chr5 180915260 + 33477594 33477716 MER34D 576 - 144 266 161486 122 chain 4099 chr5 180915260 + 33490006 33490139 MER92B 628 + 0 132 205976 42 72 71 19 chain 22909 chr5 180915260 + 33506884 33507241 THE1B 368 - 11 368 116067 27 20 24 53 4 6 37 14 10 27 2 1 25 1 0 147 chain 26132 chr5 180915260 + 33509559 33509865 AluY 311 + 0 302 99472 126 4 0 176 chain 116057 chr5 180915260 + 33514631 33516055 LTR12C 1709 - 0 1709 32433 246 0 4 231 0 4 106 3 1 5 1 0 85 0 278 237 50 51 24 0 1 436 chain 7371 chr5 180915260 + 33528041 33528156 L1PB2 3958 + 3727 3838 174970 19 9 7 22 1 0 53 1 0 10 chain 515373 chr5 180915260 + 33539934 33546121 L1PA6 6164 + 0 6162 5631 55 12 14 66 10 0 432 1 0 407 1 0 38 5 6 173 1 2 17 1 2 36 1 0 199 1 2 342 13 11 180 2 0 247 9 10 43 1 0 155 0 3 74 26 0 666 1 2 137 14 15 371 0 2 665 0 1 638 0 2 183 0 1 115 1 0 839 0 2 9 chain 4941 chr5 180915260 + 33552834 33552928 L1PREC2 3366 - 499 589 195789 11 4 2 4 1 0 44 8 7 22 chain 33862 chr5 180915260 + 33557849 33558277 MER1A 529 + 44 479 77839 414 1 8 13 chain 53252 chr5 180915260 + 33560416 33561014 L1PA4 6152 + 5530 6131 56857 188 0 1 172 0 1 146 0 1 92 chain 549661 chr5 180915260 + 33568760 33574863 L1PA3long 6157 + 50 6157 1496 829 0 1 1445 0 1 660 1 0 1902 0 4 1248 1 0 17 chain 25167 chr5 180915260 + 33592044 33592362 AluSp 311 + 1 301 103919 122 8 0 9 1 0 154 9 0 15 chain 18933 chr5 180915260 + 33593671 33593950 L1PA8 5853 + 5582 5853 130281 29 5 0 67 17 15 47 2 1 19 1 0 50 1 2 41 chain 20215 chr5 180915260 + 33607580 33607849 L1PREC2 3366 - 601 866 126485 13 2 0 35 1 0 139 1 0 78 chain 3854 chr5 180915260 + 33626609 33626779 HAL1-2a_MD 234 - 5 234 209583 7 11 0 13 13 5 20 0 65 16 10 74 17 51 0 12 chain 5778 chr5 180915260 + 33627101 33627247 HAL1-2a_MD 234 - 6 234 187371 11 13 0 8 7 8 17 0 62 19 2 0 10 3 42 39 6 1 11 chain 18413 chr5 180915260 + 33655762 33656053 L1PA8 5853 - 3 289 131737 19 0 1 70 1 0 18 6 3 13 6 7 40 2 1 62 13 11 41 chain 23366 chr5 180915260 + 33666602 33666895 AluSc 308 - 18 308 113833 9 3 0 281 chain 3361 chr5 180915260 + 33692260 33692484 MLT1J 494 + 96 353 217856 31 169 202 24 chain 37565 chr5 180915260 + 33697591 33698097 LTR10D 510 + 0 510 72729 69 3 7 23 1 0 28 8 5 58 0 4 37 6 5 30 1 2 242 chain 39539 chr5 180915260 + 33706330 33706814 L1P2 5180 - 2550 3082 69860 51 0 4 246 0 44 187 chain 189914 chr5 180915260 + 33706814 33709061 L1PA7 6471 + 4214 6470 20061 426 0 2 182 0 1 4 1 0 534 0 1 108 0 6 143 1 0 212 0 1 636 chain 26779 chr5 180915260 + 33724647 33724955 AluYk4 311 - 5 311 97051 22 2 0 284 chain 24580 chr5 180915260 + 33781803 33782071 L1PA3long 6157 - 0 273 107084 148 0 5 120 chain 6098 chr5 180915260 + 33801393 33801466 MER63A 208 + 88 161 184434 73 chain 9627 chr5 180915260 + 33841656 33841778 MER85 139 + 7 139 162458 92 0 10 30 chain 86626 chr5 180915260 + 33844000 33845032 MER11C 1089 + 0 1059 40914 58 4 13 149 0 5 24 0 1 66 1 5 369 0 4 43 0 1 148 0 1 99 0 2 71 chain 513927 chr5 180915260 + 33858824 33865105 L1PA7 6471 + 6 6469 5786 38 0 1 358 0 3 1322 0 1 24 1 0 11 1 0 4 0 1 259 28 8 94 0 2 330 0 1 57 0 2 102 1 0 5 1 5 970 15 0 80 5 6 471 0 1 643 1 2 5 12 0 575 0 214 19 1 4 513 1 0 319 2 0 13 chain 66493 chr5 180915260 + 33869614 33870615 MER11B 1079 - 91 1079 49874 5 0 1 102 0 1 53 0 1 24 39 43 14 13 3 23 2 6 117 0 1 50 7 8 12 0 1 15 28 16 18 18 17 362 4 0 95 chain 73297 chr5 180915260 + 33905999 33907041 MER11A 1151 + 0 1151 46885 60 7 106 122 9 6 34 35 0 60 0 1 54 0 1 116 1 0 50 10 16 213 13 20 8 0 35 183 7 6 60 chain 54940 chr5 180915260 + 33914819 33915491 L1PA6 6164 - 5 697 55749 7 0 5 315 0 1 134 6 20 210 chain 43516 chr5 180915260 + 33916260 33916824 THE1B-int 1605 + 0 1605 64786 13 4 3 256 12 1054 279 chain 21973 chr5 180915260 + 33916826 33917125 THE1B 368 + 2 306 120343 167 1 0 19 5 7 4 0 1 9 0 4 17 1 0 76 chain 15494 chr5 180915260 + 33919421 33919612 L1PB1 5432 - 4318 4509 139917 191 chain 48778 chr5 180915260 + 33929148 33929786 PABL_A 660 - 0 652 59890 386 5 4 9 0 3 22 0 1 4 1 0 141 0 1 4 1 9 21 0 4 26 6 5 12 chain 31351 chr5 180915260 + 33931269 33931733 MER4A1 472 + 0 472 81898 14 0 2 18 7 14 93 2 1 38 24 25 12 6 5 250 chain 76443 chr5 180915260 + 33952797 33953618 L1HS 6032 - 0 820 45238 483 1 0 337 chain 58593 chr5 180915260 + 33953618 33954241 L1HS 6032 + 1818 2441 53587 623 chain 15998 chr5 180915260 + 33960505 33960852 L1PB1 5432 + 5105 5420 138353 9 1 0 33 1 0 9 27 21 43 18 16 41 48 33 4 0 1 12 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 16189 chr5 180915260 + 33966528 33966700 AluYb9 318 - 2 174 137790 172 chain 2975 chr5 180915260 + 34004389 34004424 MADE1 96 - 61 96 225525 35 chain 30486 chr5 180915260 + 34010167 34010551 MER11A 1151 - 0 404 83459 64 1 0 195 1 0 30 3 0 26 6 31 58 chain 23805 chr5 180915260 + 34021678 34022035 L1PA8 5853 + 5507 5853 111451 54 5 4 20 4 0 24 2 0 70 13 11 44 15 14 14 1 0 91 chain 17556 chr5 180915260 + 34060599 34060952 THE1B 368 - 0 368 134113 46 2 0 29 1 0 83 102 105 49 1 16 40 chain 104650 chr5 180915260 + 34060962 34062284 THE1B-int 1605 - 11 1360 35578 766 9 10 264 0 1 96 0 25 187 chain 4273 chr5 180915260 + 34064923 34065021 MLT2D 439 - 243 342 203573 36 33 34 29 chain 24194 chr5 180915260 + 34067473 34067809 THE1B 368 - 20 368 109254 54 1 0 26 0 1 73 2 0 25 1 0 104 6 21 44 chain 71690 chr5 180915260 + 34085709 34086550 L1PA7 6471 + 5625 6466 47609 841 chain 27142 chr5 180915260 + 34102778 34103096 L1PA5 6144 + 5812 6144 95786 134 0 12 36 2 3 103 0 1 43 chain 22604 chr5 180915260 + 34120603 34120965 THE1B 368 + 0 368 117575 169 1 0 4 60 70 107 3 0 18 chain 6105 chr5 180915260 + 34129407 34129480 L1MA7 2200 + 1871 1944 184377 73 chain 9728 chr5 180915260 + 34131597 34131815 L1MA5A 2387 + 2107 2295 161948 48 2 0 26 2 0 16 63 34 36 4 7 21 chain 66517 chr5 180915260 + 34134828 34135677 L1P1 4361 - 20 870 49859 12 2 1 23 1 0 120 0 1 36 1 0 115 0 4 65 1 0 78 0 2 208 7 5 180 chain 129248 chr5 180915260 + 34135682 34137259 L1PA6 6164 + 4616 6162 28257 97 23 1 393 15 3 469 0 1 350 0 2 230 chain 565995 chr5 180915260 + 34147950 34153974 L1HS 6032 + 2 6032 155 72 0 1 2497 0 5 3455 chain 26806 chr5 180915260 + 34176217 34176521 L1PA2 6032 + 5729 6032 96951 35 1 0 268 chain 8040 chr5 180915260 + 34188965 34189124 THE1B 368 + 2 169 170819 47 0 6 13 26 27 10 11 12 52 chain 38226 chr5 180915260 + 34211509 34211930 L1PA3long 6157 - 11 432 71809 421 chain 106452 chr5 180915260 + 34211930 34213089 L1PA3long 6157 + 4567 5726 35137 1159 chain 65166 chr5 180915260 + 34223146 34223857 L1PA3long 6157 - 20 731 50489 711 chain 117651 chr5 180915260 + 34223858 34225169 L1PA3long 6157 + 4097 5408 31908 1311 chain 29983 chr5 180915260 + 34251693 34252012 AluYb8 318 + 0 318 84862 132 1 0 186 chain 5763 chr5 180915260 + 34275584 34275657 L1MA5 2750 + 2180 2254 187505 38 0 1 35 chain 19796 chr5 180915260 + 34279909 34280270 THE1D 372 + 8 360 127828 10 0 10 26 35 0 15 1 11 85 28 29 44 2 8 88 1 0 26 chain 7178 chr5 180915260 + 34286469 34286559 MLT1A0 366 + 252 342 176221 90 chain 166630 chr5 180915260 + 34305116 34307793 SVA_F 1814 - 0 1804 22443 15 0 1 670 0 1 116 1 0 10 1 0 39 0 15 19 887 0 47 1 0 871 chain 10806 chr5 180915260 + 34305987 34306100 SVA_F 1814 - 695 808 137334 113 chain 3455 chr5 180915260 + 34306186 34306324 SVA_F 1814 - 540 676 148985 87 1 0 17 1 0 32 chain 11289 chr5 180915260 + 34306325 34306502 SVA_F 1814 - 676 803 155091 17 1 0 10 49 0 100 chain 2672 chr5 180915260 + 34306353 34306380 SVA_F 1814 - 894 921 202517 27 chain 21311 chr5 180915260 + 34306514 34306826 SVA_F 1814 - 637 886 122828 215 77 14 20 chain 7243 chr5 180915260 + 34306729 34306806 SVA_F 1814 - 725 802 132696 77 chain 2540 chr5 180915260 + 34306826 34306853 SVA_F 1814 - 822 849 132696 27 chain 25260 chr5 180915260 + 34317221 34317613 MSTA 426 + 0 405 103416 97 4 5 27 3 1 76 38 45 88 0 7 59 chain 30558 chr5 180915260 + 34327465 34327783 AluYb8 318 + 0 318 83292 318 chain 20340 chr5 180915260 + 34328110 34328479 L1PA15 4387 - 32 379 126106 26 7 3 11 3 1 44 8 5 48 1 0 15 4 0 17 1 0 55 1 0 26 1 0 14 5 0 47 1 0 6 5 6 23 chain 20954 chr5 180915260 + 34354672 34354900 L1PA3long 6157 - 272 500 124087 228 chain 8237 chr5 180915260 + 34354909 34354999 L1PA2 6032 + 5942 6032 169742 90 chain 16860 chr5 180915260 + 34367507 34367728 THE1A 353 - 0 222 135940 180 1 2 24 5 5 11 chain 23197 chr5 180915260 + 34371104 34371358 L1PA2 6032 + 5778 6032 114690 254 chain 15679 chr5 180915260 + 34374273 34374469 L1P1 4361 - 1609 1806 139332 50 1 2 145 chain 3030 chr5 180915260 + 34379084 34379122 MLT2A1 477 + 440 477 224378 18 1 0 19 chain 314973 chr5 180915260 + 34379134 34383157 HERVL-int 5654 + 1 4044 12808 250 1 0 157 1 0 255 6 1 60 6 5 27 4 5 197 15 20 183 0 6 231 0 1 81 4 2 598 6 15 174 0 1 41 4 9 184 0 3 166 9 8 408 6 7 506 11 10 432 chain 310914 chr5 180915260 + 34385682 34389722 L1P3 4156 - 60 4141 12961 97 3 1 43 0 2 216 0 1 238 1 0 59 0 2 698 3 21 9 0 3 71 14 0 138 0 2 91 1 0 203 6 7 83 0 1 58 1 5 184 7 8 105 2 0 121 7 9 22 0 1 65 6 1 82 5 11 201 0 1 6 13 32 475 11 12 52 0 2 246 2 1 9 1 0 30 6 7 44 2 1 32 0 2 23 10 9 238 chain 8089 chr5 180915260 + 34391511 34391603 L1PA7 6471 + 6377 6469 170548 92 chain 25655 chr5 180915260 + 34402581 34402906 THE1A 353 - 23 348 101469 220 2 1 17 0 1 86 chain 9100 chr5 180915260 + 34408408 34408520 MLT2C2 476 - 363 476 165073 42 0 1 70 chain 158361 chr5 180915260 + 34418457 34422518 MER4-int 2692 + 73 2689 23549 26 2 0 3 1 0 16 11 9 22 1 0 25 0 1 11 1 7 228 1 0 247 0 1 36 5 6 12 5 3 207 16 14 116 0 2 128 0 5 114 3 0 17 2 0 22 0 6 62 0 1 29 18 20 131 0 1 15 0 1 23 910 314 148 22 14 25 14 19 22 0 13 21 1 2 54 14 15 177 1 0 42 880 0 60 0 10 8 1 0 105 chain 77492 chr5 180915260 + 34421470 34422344 MER11D 897 - 0 897 44738 47 0 2 227 0 23 316 2 0 282 chain 10024 chr5 180915260 + 34427047 34427171 THE1D-int 1627 - 233 357 160466 124 chain 514431 chr5 180915260 + 34428872 34435021 L1PA6 6164 - 15 6164 5734 834 1 0 264 3 0 59 0 7 7 7 0 396 0 1 5 1 0 397 0 2 479 4 6 502 0 1 15 9 1 387 0 12 440 7 0 21 0 1 752 10 11 1549 chain 13606 chr5 180915260 + 34435038 34435370 MER4D1 891 + 548 877 145957 17 3 2 30 0 7 40 11 8 13 2 0 22 88 91 28 1 0 54 6 0 17 chain 511005 chr5 180915260 + 34441751 34448357 L1PA7 6471 - 2 6468 6068 14 0 5 288 15 10 97 0 1 208 0 1 217 0 5 534 2 0 72 4 7 138 156 0 192 3 7 1430 4 0 6 17 21 525 0 1 58 23 8 359 1 0 313 2 1 9 0 1 131 0 1 248 1 0 165 0 3 122 0 19 494 11 16 84 28 17 64 3 0 52 0 1 51 1 0 68 2 0 100 58 66 236 chain 25906 chr5 180915260 + 34454714 34455072 THE1C 375 - 0 360 100407 26 1 0 100 8 2 13 5 10 20 0 3 19 0 1 166 chain 23037 chr5 180915260 + 34455716 34455988 AluSp 311 + 11 287 115463 83 0 4 189 chain 193953 chr5 180915260 + 34456823 34459796 MER4-int 2692 - 16 2691 19683 170 338 0 86 5 6 136 5 0 7 0 2 22 9 8 96 4 1 141 1 0 58 0 1 79 0 1 10 6 7 19 20 20 64 0 4 155 0 4 119 3 8 74 19 10 449 1 2 20 0 1 119 3 29 29 4 6 147 0 10 6 0 1 252 0 1 89 0 1 88 2 0 9 0 3 7 1 0 62 3 1 25 1 0 10 chain 64574 chr5 180915260 + 34461062 34461915 MER11D 897 - 0 897 50766 21 5 14 84 18 29 132 2 25 255 15 16 321 chain 41087 chr5 180915260 + 34461915 34462376 HERVK11D-int 613 - 0 460 67782 325 1 0 135 chain 70767 chr5 180915260 + 34467753 34468642 MER11D 897 - 0 897 48031 280 2 25 15 18 1 209 0 2 365 chain 290749 chr5 180915260 + 34468915 34472885 L1P3 4156 + 5 4139 13975 188 26 25 24 5 19 60 1 0 25 0 1 62 9 2 253 22 41 131 2 0 86 27 16 290 1 8 196 0 1 322 0 1 62 0 4 6 16 12 30 0 1 757 1 2 35 0 1 295 15 17 115 1 0 5 1 5 35 2 157 118 0 1 67 1 2 197 48 9 93 4 12 174 0 11 58 0 1 69 2 0 9 1 0 23 chain 6749 chr5 180915260 + 34479283 34479371 MLT1B 390 + 287 375 179332 88 chain 19509 chr5 180915260 + 34492348 34492594 AluYf4 310 - 13 251 128631 29 2 0 64 0 1 71 7 0 73 chain 63669 chr5 180915260 + 34492945 34493708 L1PA7 6471 - 21 787 51161 591 0 3 12 1 2 151 1 0 7 chain 43633 chr5 180915260 + 34522427 34522975 MER41A 554 - 0 554 64646 73 7 12 376 6 7 86 chain 5118 chr5 180915260 + 34543679 34543797 LTR49 580 - 0 114 193884 36 21 21 30 17 13 14 chain 6038 chr5 180915260 + 34560655 34560723 MLT2A1 477 - 409 477 184912 68 chain 111189 chr5 180915260 + 34560723 34562075 HERVL-int 5654 - 0 1398 33887 223 0 1 386 0 3 225 0 1 42 1 7 9 5 0 5 2 1 271 4 45 179 chain 14770 chr5 180915260 + 34562101 34562270 MLT2A1 477 - 308 477 142030 169 chain 5867 chr5 180915260 + 34569671 34569741 MER41E 591 - 120 190 186520 70 chain 11093 chr5 180915260 + 34614429 34614631 Tigger3b 1229 + 759 946 155829 10 2 0 12 1 0 68 46 34 63 chain 39866 chr5 180915260 + 34626272 34627008 Tigger3b 1229 + 26 705 69512 42 0 1 23 43 44 92 8 0 16 0 1 50 5 4 29 2 0 8 6 0 135 0 1 80 29 34 11 1 0 29 75 23 45 0 4 7 chain 29816 chr5 180915260 + 34635473 34635822 L1PA7 6471 - 7 360 85389 327 0 4 22 chain 516615 chr5 180915260 + 34640792 34646941 L1PA6 6164 - 2 6164 5524 6 4 0 9 0 1 825 2 6 857 0 1 4 1 0 9 6 9 706 0 1 315 0 5 218 0 1 863 0 1 597 0 1 140 4 1 5 0 3 816 7 18 17 23 0 117 0 1 66 22 34 43 7 6 460 chain 21846 chr5 180915260 + 34660283 34660544 AluSp 311 + 28 285 120830 210 4 0 47 chain 20710 chr5 180915260 + 34664768 34665373 L1PB1 5432 - 28 391 124929 13 1 0 21 1 0 24 2 0 10 12 9 30 14 1 16 4 3 37 22 20 51 2 0 11 4 0 12 1 0 12 1 0 15 0 1 3 207 0 12 5 0 62 chain 3595 chr5 180915260 + 34677969 34678010 MADE1 96 + 55 96 213735 41 chain 51851 chr5 180915260 + 34701185 34701916 MER4E1 777 + 0 766 57720 24 0 1 208 4 3 11 1 0 65 6 5 8 0 23 88 0 1 100 35 47 113 7 8 61 chain 29252 chr5 180915260 + 34711232 34711693 LTR7B 505 - 2 505 87781 49 14 13 54 0 1 24 1 0 82 8 10 18 37 68 68 1 11 105 chain 2952 chr5 180915260 + 34719367 34719399 MLT1G1 539 - 264 296 226056 32 chain 106503 chr5 180915260 + 34727061 34728485 THE1B-int 1605 + 29 1600 35121 123 3 0 244 5 69 483 3 4 214 56 139 4 0 1 204 0 1 85 chain 28517 chr5 180915260 + 34746878 34747233 THE1A 353 + 0 353 91109 109 2 1 92 1 0 151 chain 3986 chr5 180915260 + 34747339 34747391 MIR 256 + 117 172 207588 16 0 3 36 chain 24926 chr5 180915260 + 34764950 34765302 THE1A 353 + 0 349 105185 15 2 0 32 0 1 46 1 0 17 0 2 6 17 15 68 1 0 147 chain 125746 chr5 180915260 + 34765306 34766884 THE1A-int 1579 + 0 1574 29173 555 1 10 288 0 1 109 8 9 541 1 0 36 14 0 25 chain 6050 chr5 180915260 + 34768290 34768359 THE1-int 844 - 278 347 184812 69 chain 79018 chr5 180915260 + 34774024 34775557 L1MA3 4352 + 2218 3420 44051 39 0 4 52 1 0 10 4 3 7 0 1 35 335 0 37 0 1 49 3 0 7 7 11 38 5 0 72 3 0 11 43 41 18 0 1 70 13 11 28 0 1 305 1 6 153 1 0 39 9 14 68 0 2 35 18 16 17 chain 222420 chr5 180915260 + 34778961 34781469 L1PA5 6144 + 3614 6132 17734 309 0 1 417 0 4 283 1 0 153 11 9 347 0 1 345 0 3 405 2 0 203 0 6 32 chain 39442 chr5 180915260 + 34781880 34782368 MER9a3 513 - 0 513 70102 78 0 1 91 4 25 207 0 1 90 0 2 18 chain 325444 chr5 180915260 + 34782386 34786276 HERVK9-int 4720 - 8 4586 12371 6 0 1 89 0 4 679 4 6 465 1 0 154 1 0 5 8 9 430 2 250 273 6 7 582 5 431 454 0 1 102 0 2 459 1 2 44 0 3 39 0 1 54 1 0 26 chain 33643 chr5 180915260 + 34786849 34787330 MER9a3 513 - 0 513 78182 74 6 7 85 8 29 60 7 6 31 2 3 107 10 11 43 0 7 30 0 2 18 chain 8436 chr5 180915260 + 34802384 34802473 5S 121 + 1 90 168645 89 chain 38033 chr5 180915260 + 34809240 34809723 MER75 514 + 0 498 72082 103 7 4 216 0 18 157 chain 32463 chr5 180915260 + 34842513 34842948 LTR3A 482 - 37 478 80088 13 13 12 14 12 10 228 0 9 155 chain 17325 chr5 180915260 + 34876892 34877100 L1PA7 6471 + 6259 6468 134723 149 0 1 59 chain 28809 chr5 180915260 + 34939366 34939669 AluYb8 318 - 15 318 89846 303 chain 2729 chr5 180915260 + 34943453 34943482 L1MC4 1079 - 340 369 229744 29 chain 5288 chr5 180915260 + 34968443 34968513 LTR8 732 + 642 712 192132 24 0 1 4 1 0 41 chain 47712 chr5 180915260 + 34971614 34972146 L1PA5 6144 - 0 532 60681 532 chain 14354 chr5 180915260 + 34972383 34973033 L1PB1 5432 - 10 315 143361 18 1 0 11 2 1 22 1 0 23 2 0 12 13 10 17 356 29 43 1 0 15 2 1 52 2 0 9 22 17 4 1 0 21 chain 3425 chr5 180915260 + 34976257 34976294 LTR16A 446 - 92 129 216666 37 chain 5883 chr5 180915260 + 34981222 34981332 L1PA16 3655 + 3531 3619 186349 48 3 0 17 14 0 7 5 0 16 chain 80320 chr5 180915260 + 34981676 34982726 MER11C 1089 - 29 1089 43467 146 4 0 48 0 1 127 0 1 38 1 0 5 0 4 95 6 4 19 40 40 146 1 0 46 1 0 19 0 4 61 0 9 247 chain 28807 chr5 180915260 + 34984287 34984599 AluYb8 318 - 8 318 89861 184 2 0 126 chain 44796 chr5 180915260 + 34990003 34990975 MER41B 635 + 5 624 63296 123 0 1 132 1 0 92 1 0 4 5 6 72 34 0 17 17 16 47 318 0 109 chain 8194 chr5 180915260 + 34990987 34991104 MER4E 760 + 637 755 169984 46 8 7 48 0 2 15 chain 5721 chr5 180915260 + 35002757 35002827 MLT1A0 366 + 227 297 187917 70 chain 17360 chr5 180915260 + 35011778 35012014 L1PB3 3668 + 3245 3478 134629 49 1 0 65 6 5 27 1 0 87 chain 25027 chr5 180915260 + 35014280 35014581 AluSg4 309 + 4 304 104652 127 1 0 173 chain 458778 chr5 180915260 + 35017743 35022837 L1PA3long 6157 + 1057 6156 8450 2087 1 3 1035 0 1 457 0 1 982 0 1 532 chain 525286 chr5 180915260 + 35075174 35081303 L1PA5 6144 + 0 6144 4658 135 6 20 1014 9 0 58 1 2 1079 8 0 885 0 1 308 4 0 431 0 1 347 0 1 292 0 15 42 0 5 391 3 2 265 1 0 123 1 0 300 0 1 108 0 1 45 1 0 272 chain 18594 chr5 180915260 + 35093823 35094099 Tigger3a 397 + 0 326 131248 76 18 67 71 9 10 102 chain 515813 chr5 180915260 + 35104357 35110476 L1PA5 6144 + 0 6144 5594 120 0 14 373 0 1 299 17 0 11 0 17 102 1 0 15 0 1 216 9 0 65 0 1 35 2 0 163 1 0 11 0 4 787 2 0 5 0 2 67 1 0 4 0 1 114 0 1 866 0 1 241 1 2 40 0 1 330 0 1 338 0 9 400 8 7 606 1 3 20 1 0 707 1 4 139 chain 12544 chr5 180915260 + 35134034 35134281 L1PB1 5432 + 5203 5430 150066 17 2 1 15 1 0 45 1 0 15 1 0 6 16 6 19 2 0 5 4 3 11 2 0 24 1 0 21 1 4 9 1 0 18 2 0 8 chain 4349 chr5 180915260 + 35138340 35138426 L1MB2 1706 + 1598 1684 202596 13 1 0 10 1 0 12 1 2 13 3 4 32 chain 21462 chr5 180915260 + 35173940 35174189 L1PA5 6144 - 4 253 122287 249 chain 75606 chr5 180915260 + 35176486 35177455 LTR5_Hs 974 + 0 974 45708 169 1 0 120 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 10381 chr5 180915260 + 35179771 35179896 MSTA 426 + 0 125 158782 125 chain 24629 chr5 180915260 + 35180690 35180987 L1PA5 6144 - 1 305 106833 249 1 8 47 chain 29438 chr5 180915260 + 35191161 35191471 AluYa5 310 - 0 310 86905 310 chain 7137 chr5 180915260 + 35226138 35226229 MER33 330 - 239 330 176492 91 chain 34369 chr5 180915260 + 35233631 35234186 LTR9B 643 - 82 635 77107 34 6 0 9 9 0 7 0 4 38 2 0 9 49 47 187 0 1 17 6 8 89 0 8 30 4 6 59 chain 36641 chr5 180915260 + 35237187 35237580 L1PA2 6032 + 5639 6032 74038 393 chain 6829 chr5 180915260 + 35238640 35238744 MSTD 398 - 47 147 178726 26 1 2 44 5 0 28 chain 13830 chr5 180915260 + 35238986 35239172 L1PA16 3655 + 3387 3575 145134 28 4 6 154 chain 5934 chr5 180915260 + 35254335 35254408 MER41B 635 - 81 154 185843 73 chain 518877 chr5 180915260 + 35256177 35262188 L1PA5 6144 - 16 6141 5281 55 6 92 364 0 1 878 0 3 216 0 1 847 0 6 582 0 4 1224 0 1 191 2 0 164 0 4 43 0 1 1072 5 14 362 chain 29704 chr5 180915260 + 35268652 35269150 LTR7B 505 - 8 505 85811 43 15 14 41 0 1 36 1 0 82 8 10 18 80 68 66 0 10 108 chain 13696 chr5 180915260 + 35289276 35289473 L1MA2 4263 - 327 522 145612 73 1 0 57 17 14 5 0 2 44 chain 28255 chr5 180915260 + 35290432 35290808 THE1C 375 + 0 374 92090 184 12 11 155 1 0 24 chain 228446 chr5 180915260 + 35325855 35329230 L1PA13 3608 + 141 3497 17390 22 1 0 14 4 3 20 25 18 68 8 6 102 0 1 17 1 0 16 1 0 17 2 0 14 11 7 15 1 0 16 6 4 15 2 0 18 1 0 37 10 15 40 6 4 60 6 1 412 12 13 285 0 1 110 0 4 73 0 1 216 0 1 135 1 0 39 0 3 5 1 3 60 1 0 130 36 35 23 2 0 21 14 14 138 1 4 100 6 29 163 8 9 24 2 0 390 1 0 28 1 0 61 0 2 6 1 0 8 23 0 36 3 1 61 1 0 18 0 1 37 1 0 5 3 1 47 12 13 10 1 0 20 0 3 7 chain 21896 chr5 180915260 + 35331180 35331553 THE1B 368 + 0 368 120646 47 0 1 56 94 89 100 1 0 75 chain 26482 chr5 180915260 + 35343684 35344369 THE1B 368 - 0 368 98109 56 1 3 16 1 0 120 322 1 127 0 5 27 2 0 13 chain 512176 chr5 180915260 + 35348154 35354590 L1PA7 6471 - 2 6456 5954 11 0 2 69 0 3 417 2 1 148 2 0 115 3 0 79 0 3 94 0 11 42 1 3 68 0 2 516 2 34 11 1 2 329 0 1 16 0 1 258 0 1 180 1 0 4 2 7 106 6 4 401 4 1 31 13 3 29 0 29 156 83 9 610 0 2 20 1 2 138 0 2 422 1 0 83 0 2 213 7 6 271 1 0 259 0 4 556 12 11 180 0 15 73 1 0 388 chain 22541 chr5 180915260 + 35356544 35356797 AluY 311 + 51 305 117840 75 0 1 178 chain 25869 chr5 180915260 + 35380448 35380812 THE1B 368 + 0 368 100571 118 7 8 46 16 23 24 4 0 149 chain 213035 chr5 180915260 + 35386263 35389697 L1PA13 3608 + 151 3518 18294 12 1 0 14 78 87 24 1 0 4 1 0 114 21 22 17 2 0 17 6 2 17 1 0 15 2 0 20 3 1 14 2 1 20 1 0 78 2 0 285 0 2 39 4 1 25 0 14 50 1 0 5 7 9 100 1 4 26 0 1 41 21 19 8 0 1 98 26 27 70 45 46 100 1 2 222 1 2 106 8 13 15 42 12 14 18 0 253 2 0 3 4 0 7 1 2 151 48 48 135 4 0 80 0 1 195 9 10 114 0 1 145 1 0 28 5 4 110 2 0 61 1 0 30 10 1 25 8 5 33 1 0 14 2 0 5 2 0 19 6 5 11 29 21 14 chain 8553 chr5 180915260 + 35396051 35396168 L1PA16 3655 + 3258 3374 168003 19 0 1 12 3 1 83 chain 552049 chr5 180915260 + 35396199 35402337 L1PA3long 6157 + 10 6157 1188 1933 0 1 443 0 2 1557 0 1 413 0 4 480 1 0 542 0 2 769 chain 4078 chr5 180915260 + 35415579 35415881 MLT1F-int 966 - 226 527 206220 30 190 189 17 28 0 8 1 29 28 chain 95381 chr5 180915260 + 35445339 35446385 L1PA3long 6157 + 5110 6157 37989 909 0 1 137 chain 19471 chr5 180915260 + 35455683 35455991 THE1B 368 - 62 368 128751 18 0 2 46 1 0 10 42 40 21 1 0 169 chain 16749 chr5 180915260 + 35457828 35458115 THE1D 372 + 73 372 136259 86 24 35 12 17 18 44 4 5 67 1 0 32 chain 23475 chr5 180915260 + 35468478 35468752 AluSc 308 + 14 288 113241 274 chain 42794 chr5 180915260 + 35481057 35481547 L1PA4 6152 - 12 502 65667 23 9 0 7 0 9 451 chain 398811 chr5 180915260 + 35494286 35499523 L1P2 5180 + 2 5178 10144 107 1 0 4 19 6 16 13 14 98 6 5 25 23 24 11 49 50 145 1 0 8 1 0 39 1 0 60 68 0 58 7 0 101 36 34 14 6 3 5 0 3 98 1 26 213 72 81 83 35 35 3722 1 0 46 1 0 38 1 0 4 chain 44662 chr5 180915260 + 35500000 35500493 L1PA3long 6157 + 5658 6157 63420 482 0 6 11 chain 43402 chr5 180915260 + 35512149 35512639 L1PA4 6152 + 5658 6148 64934 490 chain 65116 chr5 180915260 + 35521401 35522501 L1PB1 5432 + 4380 5422 50521 179 21 26 43 3 0 121 0 1 37 7 15 300 0 1 13 116 69 16 5 0 15 1 3 17 1 0 44 1 0 16 2 0 6 16 6 9 0 2 5 2 0 8 1 0 13 2 0 25 1 0 22 1 0 12 1 0 18 chain 126085 chr5 180915260 + 35531546 35533094 LTR12C 1709 + 0 1709 29068 460 6 5 201 0 119 52 1 0 70 3 2 8 1 0 157 0 47 103 0 4 311 2 1 150 11 7 12 chain 18289 chr5 180915260 + 35538332 35538657 MSTA 426 + 4 376 132105 104 16 40 58 4 0 8 37 43 36 3 24 59 chain 539641 chr5 180915260 + 35568330 35574348 L1PA3long 6157 - 0 6157 2872 2234 0 9 1742 2 0 413 1 2 556 1 2 293 1 129 412 0 1 211 0 1 152 chain 3925 chr5 180915260 + 35574399 35574443 MADE1 96 + 2 46 208484 44 chain 34689 chr5 180915260 + 35581828 35582295 THE1B-int 1605 - 1112 1605 76642 37 1 26 128 0 1 254 14 17 5 3 0 25 chain 53905 chr5 180915260 + 35595991 35596593 L1PA3long 6157 - 0 603 56424 501 1 2 100 chain 207426 chr5 180915260 + 35602515 35605457 L1PB2 3958 + 960 3837 18688 38 0 8 6 5 1 239 14 5 398 0 2 29 0 4 55 0 1 17 3 0 526 17 16 13 1 2 161 1 0 4 23 6 113 0 2 102 1 3 40 8 4 137 4 0 5 6 0 27 2 1 209 23 6 120 0 4 43 2 0 56 1 0 8 1 0 10 4 1 57 2 0 11 5 1 89 2 0 43 4 2 32 1 0 64 1 0 62 21 19 13 1 0 62 chain 4232 chr5 180915260 + 35609616 35609666 MER21A 919 + 123 173 204147 50 chain 53880 chr5 180915260 + 35630116 35632282 THE1C-int 1605 - 285 1605 56440 134 0 1 250 318 511 25 3 1 78 0 1 39 1100 8 62 1 55 139 4 3 13 chain 25868 chr5 180915260 + 35631115 35631479 THE1B 368 - 0 368 100577 66 6 8 111 12 11 132 0 5 22 2 0 13 chain 3422 chr5 180915260 + 35633087 35633126 U7 62 - 23 62 216718 39 chain 4254 chr5 180915260 + 35674250 35674300 MLT1A 405 - 36 86 203830 50 chain 24154 chr5 180915260 + 35674483 35674769 L1PA3long 6157 - 2 288 109460 286 chain 271959 chr5 180915260 + 35717928 35721867 MER61-int 3695 - 7 3694 15085 19 11 7 35 0 1 271 1 0 209 0 1 127 6 8 42 9 17 51 1 0 29 15 11 92 1 0 200 0 28 352 1 4 52 7 11 256 310 0 55 1 0 4 0 1 6 1 18 153 0 5 88 4 0 7 3 0 22 0 1 60 0 1 44 9 13 41 6 8 87 0 1 387 12 17 209 2 0 94 7 6 124 2 3 13 0 1 281 11 10 59 1 0 16 10 6 23 chain 33073 chr5 180915260 + 35722585 35722951 L1PA2 6032 - 0 365 79092 104 1 0 261 chain 26566 chr5 180915260 + 35729764 35730115 THE1A 353 + 0 353 97782 76 8 9 25 1 0 185 0 2 56 chain 114176 chr5 180915260 + 35737335 35738616 L1PA4 6152 - 18 1301 33039 95 0 1 853 0 1 333 chain 389740 chr5 180915260 + 35746085 35751451 L1PB1 5432 + 112 5323 10457 192 0 1 4 1 0 20 0 1 119 0 3 144 0 1 4 2 1 378 0 1 310 0 6 98 1 0 6 14 0 12 6 5 183 0 5 49 0 1 615 0 3 22 0 2 242 0 6 296 1 0 95 37 27 248 30 12 67 1 0 195 18 18 94 1 0 4 0 1 126 2 4 622 0 2 124 25 26 102 8 13 182 38 37 14 0 3 5 8 5 146 3 4 85 123 0 13 3 0 22 1 0 9 16 11 11 3 1 50 0 1 15 6 5 40 1 0 15 1 0 4 2 0 12 9 0 11 chain 24307 chr5 180915260 + 35796427 35796725 AluYk4 311 + 0 295 108624 53 18 14 65 1 0 142 0 2 19 chain 37218 chr5 180915260 + 35808354 35808793 L1PA5 6144 - 1 436 73212 390 5 1 44 chain 6004 chr5 180915260 + 35818256 35818321 L1PA5 6144 - 5 70 185207 65 chain 7506 chr5 180915260 + 35842289 35842380 MER4A1 472 - 346 438 174126 5 0 1 86 chain 112628 chr5 180915260 + 35845142 35846968 THE1C-int 1605 - 6 1580 33493 445 1 2 28 27 23 441 9 10 189 14 21 23 309 0 38 3 0 71 8 9 135 0 54 85 chain 64045 chr5 180915260 + 35865061 35865817 L1PA5 6144 - 2 754 50989 7 5 0 142 14 15 588 chain 15901 chr5 180915260 + 35865818 35865995 L1PA5 6144 + 5245 5422 138651 177 chain 130885 chr5 180915260 + 35891984 35893534 LTR12C 1709 - 0 1709 27888 481 0 4 107 3 1 5 1 0 115 0 159 523 1 0 4 0 1 201 5 4 104 chain 3935 chr5 180915260 + 35896681 35896724 MER3 215 - 8 51 208330 43 chain 535153 chr5 180915260 + 35911841 35917978 L1PA4 6152 + 0 6151 3574 11 0 1 115 0 14 996 0 1 47 1 2 49 1 0 30 0 1 438 0 1 207 1 0 2071 1 0 60 1 0 621 1 0 37 0 1 227 1 0 1221 chain 55933 chr5 180915260 + 35917983 35918713 L1PA7 6471 + 5703 6459 55163 14 0 7 22 0 24 361 1 0 165 17 13 150 chain 23943 chr5 180915260 + 35969988 35970656 THE1B 368 - 0 368 110660 56 14 13 99 4 0 25 321 11 109 0 15 40 chain 12459 chr5 180915260 + 35975799 35975943 L1PA5 6144 - 0 145 150420 29 0 1 115 chain 42812 chr5 180915260 + 35979264 35979840 THE1B-int 1605 - 979 1605 65637 66 0 1 12 1 2 59 1 0 4 0 1 25 7 24 134 0 32 87 18 17 162 chain 21784 chr5 180915260 + 35989952 35990210 AluY 311 + 48 299 121082 74 2 0 42 5 0 135 chain 18422 chr5 180915260 + 35993577 35993806 PRIMA4_LTR 623 + 392 622 131708 153 4 5 72 chain 4964 chr5 180915260 + 36005739 36005816 MSTA-int 1630 - 5 126 195548 10 4 5 54 0 43 9 chain 50989 chr5 180915260 + 36005820 36006448 PABL_A 660 - 0 660 58320 147 0 1 144 0 2 121 0 1 154 0 9 22 1 5 19 0 15 20 chain 13677 chr5 180915260 + 36014442 36014771 THE1D 372 + 28 345 145682 42 24 5 29 0 1 13 20 0 9 1 21 18 74 80 99 chain 119743 chr5 180915260 + 36018904 36024084 L1PB1 5432 - 16 4137 31135 12 1 0 11 7 6 17 1 0 24 7 5 9 1 0 5 9 7 23 13 1 10 6 5 45 1 0 12 8 7 49 2 0 9 2 0 3 2 0 12 3 2 6 1 0 21 7 0 12 7 0 143 10 6 116 3261 2220 159 0 1 5 0 3 299 19 20 40 5 4 377 1 0 301 4 0 6 38 70 38 chain 20958 chr5 180915260 + 36027616 36027849 L1PA5 6144 - 12 245 124072 233 chain 16326 chr5 180915260 + 36054036 36054260 MER30 238 - 0 238 137417 39 3 0 66 8 25 108 chain 37643 chr5 180915260 + 36058483 36058982 LTR3B_ 500 + 0 500 72633 75 2 1 80 5 6 138 2 3 197 chain 33032 chr5 180915260 + 36060365 36060818 LTR3B_ 500 + 0 466 79166 78 1 0 5 1 0 71 0 6 6 5 0 111 10 14 9 1 2 55 7 11 7 0 5 86 chain 134743 chr5 180915260 + 36061346 36062822 L1PA3long 6157 - 2 1477 27067 704 1 0 771 chain 4063 chr5 180915260 + 36082712 36082766 L1M3c 1411 + 615 669 206432 54 chain 13785 chr5 180915260 + 36092341 36092566 MSTA 426 + 182 426 145317 12 15 19 29 16 31 153 chain 35215 chr5 180915260 + 36113128 36113589 LTR2 463 + 0 463 75903 55 0 3 312 14 15 26 1 0 28 1 0 24 chain 36969 chr5 180915260 + 36129879 36130298 L1PA4 6152 + 5732 6151 73554 166 1 0 140 0 1 112 chain 20673 chr5 180915260 + 36130479 36130755 L1MA3 4352 + 37 312 125063 23 1 2 93 1 0 20 0 2 7 4 1 127 chain 5485 chr5 180915260 + 36155221 36155287 U6 107 + 1 69 190163 35 0 2 31 chain 529243 chr5 180915260 + 36184377 36190462 L1PA5 6144 - 12 6144 4270 247 1 0 585 1 5 289 0 7 754 0 1 288 0 6 18 1 2 252 0 3 401 1 5 17 0 5 51 1 0 228 1 3 258 1 0 326 0 4 182 0 2 779 1 6 295 0 1 169 0 4 823 1 2 114 chain 22025 chr5 180915260 + 36199071 36199313 L1PA4 6152 + 5909 6151 120119 242 chain 54972 chr5 180915260 + 36205746 36206396 L1PA6 6164 + 5506 6156 55722 650 chain 17006 chr5 180915260 + 36211271 36211468 MER11B 1079 - 877 1074 135578 197 chain 29099 chr5 180915260 + 36234194 36234498 AluYg6 310 + 0 304 88561 304 chain 6014 chr5 180915260 + 36270140 36270219 MADE1 96 - 0 95 185097 29 0 16 50 chain 6038 chr5 180915260 + 36291253 36291426 L1MB2 1706 - 73 246 184905 12 1 0 10 1 0 12 6 6 11 39 26 16 12 27 53 chain 294302 chr5 180915260 + 36291503 36294756 L1PA3long 6157 - 0 3254 13748 384 2 1 350 0 1 1476 0 1 1041 chain 5381 chr5 180915260 + 36294756 36294825 L1MB3 1562 - 243 313 185193 15 0 1 54 chain 28985 chr5 180915260 + 36295302 36295674 THE1C 375 + 0 375 89067 135 0 4 44 2 3 57 2 0 132 chain 23604 chr5 180915260 + 36298126 36298418 AluSx4 309 + 6 297 112562 103 1 0 188 chain 28100 chr5 180915260 + 36299001 36299514 MLT2A1 477 + 0 477 92649 140 1 2 27 1 5 31 1 3 33 28 35 107 98 48 46 chain 155960 chr5 180915260 + 36316084 36318307 L1MA2 4263 - 205 2424 23863 72 0 1 19 1 0 8 1 0 93 1 0 15 0 1 40 16 13 172 0 5 33 0 1 5 14 5 8 6 0 168 1 0 232 1 0 6 1 2 45 14 17 110 2 0 53 0 1 18 10 11 207 5 0 15 0 6 27 7 5 638 44 45 104 0 7 11 chain 34703 chr5 180915260 + 36318712 36319213 L1M1 2793 + 1270 1754 76617 190 28 4 131 5 0 7 8 20 132 chain 38207 chr5 180915260 + 36321101 36321511 L1PA2 6032 - 765 1175 71583 410 chain 70632 chr5 180915260 + 36321511 36322281 L1PA2 6032 + 5260 6032 48095 756 0 2 14 chain 27022 chr5 180915260 + 36328801 36329123 LTR17 781 - 456 781 96210 94 0 1 153 8 10 67 chain 282959 chr5 180915260 + 36329435 36332667 HERV17-int 4347 - 0 4068 14474 1221 0 833 172 4 1 9 0 1 1205 0 2 455 4 7 162 chain 43190 chr5 180915260 + 36332696 36333215 LTR17 781 - 0 517 65184 7 1 0 447 1 0 63 chain 26992 chr5 180915260 + 36334132 36334425 AluYd8 298 - 8 298 96309 176 3 0 114 chain 4513 chr5 180915260 + 36345417 36345472 MER41B 635 - 101 156 200645 55 chain 28258 chr5 180915260 + 36348532 36348841 AluYf4 310 - 0 310 92086 103 0 1 206 chain 24675 chr5 180915260 + 36351309 36351594 AluSp 311 - 1 286 106583 285 chain 4215 chr5 180915260 + 36363183 36363254 MLT1H2 457 - 18 88 204372 41 9 8 21 chain 28732 chr5 180915260 + 36375771 36376076 AluYg6 310 + 0 305 90197 305 chain 36784 chr5 180915260 + 36408065 36408645 L1MA2 4263 + 2260 2837 73821 338 0 1 42 9 7 35 14 14 18 65 63 59 chain 66890 chr5 180915260 + 36410651 36411487 L1PA7 6471 - 1 854 49687 228 0 4 252 1 6 280 0 2 18 2 3 46 0 5 9 chain 65730 chr5 180915260 + 36411488 36412245 L1PA6 6164 - 12 769 50232 757 chain 8383 chr5 180915260 + 36412777 36412878 L1MC1 2226 + 178 279 168944 101 chain 24118 chr5 180915260 + 36414328 36414680 THE1B 368 - 0 368 109647 57 1 0 17 1 0 98 0 4 10 28 27 100 0 15 40 chain 43865 chr5 180915260 + 36416338 36416883 MLT2A2 560 - 0 560 64372 356 0 1 52 6 21 98 1 0 32 chain 3773 chr5 180915260 + 36420704 36420843 Kanga1c 672 - 27 169 210772 12 5 6 16 63 65 43 chain 72239 chr5 180915260 + 36429264 36430603 L1PREC2 3366 - 2119 3147 47363 47 11 17 268 319 9 152 1 0 5 0 1 280 5 3 62 1 0 83 0 1 26 5 4 32 2 0 11 7 6 7 1 0 14 chain 39886 chr5 180915260 + 36454576 36455045 LTR10F 562 + 0 562 69478 161 0 93 308 chain 54716 chr5 180915260 + 36466843 36467521 L1P2 5180 + 1429 2114 49720 268 2 1 5 0 1 310 0 7 93 chain 324423 chr5 180915260 + 36467521 36471550 L1PA8 5853 + 1813 5853 12422 158 0 1 915 6 5 165 3 0 312 0 1 216 0 1 106 0 5 127 10 11 146 0 1 366 0 5 71 1 5 11 0 1 7 14 6 39 0 4 93 1 2 172 0 1 171 14 15 35 0 4 19 2 0 74 0 2 331 1 0 147 2 1 36 9 7 70 2 1 9 2 1 51 2 1 19 1 0 93 chain 232126 chr5 180915260 + 36473845 36476562 L1PA6 6164 + 3421 6162 17191 7 1 0 200 0 2 52 0 1 173 2 0 506 0 4 122 4 29 530 1 0 248 0 1 362 0 1 65 6 0 438 chain 58307 chr5 180915260 + 36476641 36477306 L1PA5 6144 + 5434 6137 53803 391 0 1 57 0 36 70 0 1 147 chain 21663 chr5 180915260 + 36486441 36486824 THE1D 372 + 0 372 121531 53 38 26 87 45 47 11 1 0 148 chain 5190 chr5 180915260 + 36500013 36500069 THE1C 375 - 319 375 193145 56 chain 24768 chr5 180915260 + 36500466 36500756 AluSp 311 - 9 300 106067 152 2 3 136 chain 517942 chr5 180915260 + 36508125 36514272 L1PA6 6164 + 0 6161 5384 235 33 4 278 0 2 48 1 0 111 0 1 119 1 18 111 1 0 1407 0 1 21 0 2 163 1 0 385 1 0 51 0 1 420 3 7 66 0 1 250 0 1 582 1 3 361 1 0 663 0 4 101 0 8 32 8 10 208 0 2 484 chain 3123 chr5 180915260 + 36521309 36521404 HAL1-2a_MD 234 - 184 234 222509 15 2 0 8 19 0 13 24 0 14 chain 48613 chr5 180915260 + 36543679 36544447 L1PA15 4387 - 35 790 60022 26 4 0 13 25 23 16 10 7 52 1 0 6 5 1 23 2 1 54 1 0 25 2 1 88 0 2 82 3 2 22 0 1 9 12 10 61 12 15 123 0 1 91 chain 59972 chr5 180915260 + 36555338 36556331 L1PA15 4387 - 60 1041 52839 12 3 1 44 6 3 49 20 16 17 2 1 54 9 8 17 2 1 40 10 9 19 37 23 81 1 0 9 1 0 29 10 8 57 4 0 17 6 8 64 0 4 243 0 4 29 1 14 100 chain 38633 chr5 180915260 + 36560093 36560561 L1PA4 6152 - 0 445 71245 6 3 0 90 21 1 348 chain 21472 chr5 180915260 + 36582810 36583116 AluSq2 311 + 10 290 122246 116 9 0 9 22 5 150 chain 5279 chr5 180915260 + 36593189 36593266 Charlie4a 502 - 277 355 192220 64 3 4 10 chain 22446 chr5 180915260 + 36616028 36616305 AluSg7 307 + 11 290 118272 120 0 1 72 0 1 4 1 0 70 0 1 10 chain 3012 chr5 180915260 + 36700339 36700373 MER3 215 + 177 211 224768 34 chain 86377 chr5 180915260 + 36747463 36748419 L1PA4 6152 + 5183 6151 41009 826 0 12 130 chain 26550 chr5 180915260 + 36752357 36752721 MLT2A1 477 + 8 385 97841 7 0 4 103 18 19 28 0 4 22 2 1 46 0 5 138 chain 4336 chr5 180915260 + 36762276 36762330 LTR16A1 462 - 0 54 202770 54 chain 3075 chr5 180915260 + 36773324 36773360 MLT1D 503 - 14 50 223433 36 chain 119608 chr5 180915260 + 36782501 36784069 LTR12C 1709 + 0 1709 31177 297 0 1 352 0 278 184 1 0 4 4 2 106 0 4 157 2 0 66 5 0 140 132 0 118 chain 29299 chr5 180915260 + 36784089 36784461 MER48 407 + 0 390 87573 30 0 1 5 1 0 65 1 0 48 0 19 222 chain 14445 chr5 180915260 + 36795308 36795552 L1PB1 5432 - 19 241 143063 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 31 11 0 15 1 0 44 1 0 18 1 0 28 chain 9330 chr5 180915260 + 36810850 36810981 Tigger3a 397 - 105 258 163901 48 0 1 48 5 16 8 0 10 22 chain 221195 chr5 180915260 + 36811418 36813905 L1PA4 6152 + 3632 6152 17800 1159 0 26 482 0 3 295 0 1 70 0 1 90 1 0 6 0 1 272 0 1 85 0 1 27 chain 236437 chr5 180915260 + 36822523 36825746 L1PB2 3958 - 120 3347 16957 63 2 1 20 2 0 73 1 0 63 2 1 33 0 1 38 2 0 94 2 0 12 0 2 54 10 6 16 2 1 54 2 0 70 21 22 230 24 22 38 1 0 88 10 44 243 0 2 55 19 9 153 0 1 183 0 1 83 6 7 193 0 3 214 0 3 60 1 0 245 10 1 56 0 1 29 0 1 45 0 1 16 4 8 25 17 3 60 0 1 43 1 0 7 0 1 428 chain 420844 chr5 180915260 + 36848608 36853522 L1PA6 6164 + 1213 6162 9517 1068 0 1 46 1 2 266 0 3 584 1 2 4 0 1 339 0 1 166 2 0 5 0 4 1683 0 3 292 0 18 125 0 1 163 0 2 67 0 3 94 2 0 6 chain 14948 chr5 180915260 + 36854889 36855114 MER30 238 - 0 237 141475 78 17 34 12 2 0 14 4 0 69 0 1 29 chain 66833 chr5 180915260 + 36892283 36893053 L1PA5 6144 + 5374 6141 49715 12 0 3 642 1 0 92 1 0 12 4 0 6 chain 22828 chr5 180915260 + 36898613 36898883 AluSp 311 - 12 282 116453 270 chain 13400 chr5 180915260 + 36901338 36901582 L1PA15 4387 - 21 248 146721 10 1 0 28 6 1 12 3 1 44 17 14 39 1 0 9 4 0 23 1 0 46 chain 227334 chr5 180915260 + 36916616 36919245 L1PA5 6144 - 12 2625 17466 668 1 0 14 1 11 138 0 4 150 0 5 42 52 12 1554 0 6 9 chain 18598 chr5 180915260 + 36973463 36974045 L1PA8 5853 - 0 261 131234 93 1 0 3 315 0 16 2 1 50 1 0 11 1 0 70 2 0 17 chain 153387 chr5 180915260 + 37012565 37014358 SVA_D 2077 - 0 2071 24172 20 0 3 124 8 0 142 0 2 245 0 37 26 0 115 23 2 0 255 0 51 48 0 83 16 40 0 138 0 40 544 0 1 128 4 0 30 chain 2229 chr5 180915260 + 37013490 37013514 SVA_D 2077 - 1595 1619 227385 24 chain 3031 chr5 180915260 + 37025490 37025525 L1MA4 2864 + 2565 2600 224356 35 chain 14957 chr5 180915260 + 37053517 37053743 MER44A 345 - 93 323 141457 31 1 0 36 0 8 55 12 3 12 0 6 79 chain 8841 chr5 180915260 + 37061802 37061911 MER2 342 - 93 202 166427 109 chain 50178 chr5 180915260 + 37078822 37079471 L1PA11 4918 - 407 1052 58882 22 1 0 17 2 0 68 2 0 10 7 6 56 0 3 324 1 0 139 chain 5196 chr5 180915260 + 37082704 37082762 LTR9B 643 - 576 634 193072 58 chain 50359 chr5 180915260 + 37084902 37086487 L1PBa 3878 + 1715 2360 58750 186 941 0 225 0 4 50 1 2 88 4 0 90 chain 247272 chr5 180915260 + 37089466 37093833 HERVK22-int 3844 + 5 3810 16380 33 3 0 361 0 2 233 1 0 26 2 3 101 10 123 85 41 40 69 0 1 247 0 1 4 12 11 235 6 5 146 16 19 138 5 12 179 0 3 37 16 0 158 8 4 561 10 11 195 1 0 70 2 1 5 1 0 18 1 0 36 1 0 20 2 0 39 4 0 10 1 0 45 2 0 14 27 16 11 2 0 5 2 0 6 4 0 11 1 0 8 66 48 19 11 7 25 829 219 69 1 0 60 chain 103842 chr5 180915260 + 37094755 37096113 L1PB 1623 + 118 1471 35762 51 4 1 17 1 0 4 2 1 77 1 0 134 1 0 8 1 0 74 1 0 40 7 8 15 1 0 421 8 13 321 7 8 139 6 4 17 chain 307286 chr5 180915260 + 37099824 37104403 L1PA11 4918 - 340 4677 13115 11 3 1 12 1 0 15 61 73 59 2 1 7 1 0 5 2 1 61 0 1 186 11 13 435 0 1 4 4 0 3 2 0 212 6 10 268 5 7 54 8 10 156 0 1 31 5 9 17 0 2 139 4 0 103 9 13 345 6 10 35 6 15 18 8 4 10 1 5 19 2 1 89 0 1 1 328 0 32 1 9 244 5 10 63 0 4 11 0 3 115 6 10 28 6 7 107 0 3 40 0 6 76 0 12 66 21 23 127 1 0 314 8 7 13 0 4 73 21 21 146 0 2 249 0 2 36 chain 14517 chr5 180915260 + 37122773 37122989 AluSx 319 + 40 289 142830 103 31 64 82 chain 109923 chr5 180915260 + 37128562 37130484 L1PB1 5432 + 3794 5427 34233 18 6 8 4 1 0 60 0 27 24 304 0 116 0 2 157 0 2 252 7 11 60 0 2 92 0 2 12 21 20 91 1 0 8 12 16 325 20 16 15 1 0 10 1 0 13 6 2 9 2 0 52 2 1 14 0 10 34 50 37 11 2 0 5 1 0 4 15 12 22 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 27500 chr5 180915260 + 37133639 37134026 L1P4 1494 - 957 1345 94649 150 0 1 21 26 26 190 chain 4056 chr5 180915260 + 37135982 37136077 THE1C 375 - 237 346 206544 23 37 51 35 chain 11022 chr5 180915260 + 37140918 37141064 MER30 238 + 74 230 156120 29 10 20 107 chain 30245 chr5 180915260 + 37159196 37159512 AluYb8 318 - 2 318 84071 316 chain 20013 chr5 180915260 + 37245028 37245264 AluY 311 + 57 301 127102 158 3 0 5 0 11 70 chain 16933 chr5 180915260 + 37252217 37252730 MSTA 426 + 29 426 135769 97 4 5 63 126 1 13 8 11 19 40 40 14 1 0 8 65 71 55 chain 247838 chr5 180915260 + 37258908 37261754 L1PA5 6144 - 2 2869 16364 495 0 1 51 10 21 772 0 1 323 6 8 171 1 7 1017 chain 32034 chr5 180915260 + 37264610 37265051 MLT2A1 477 - 0 477 80811 59 3 33 202 10 14 26 0 1 20 0 1 7 1 0 81 4 5 28 chain 456625 chr5 180915260 + 37265063 37271630 HERVL-int 5654 - 12 5654 8522 124 0 5 82 0 1 896 1 0 513 304 0 129 3 2 21 0 4 431 21 19 321 15 0 32 0 1 355 50 62 431 6 8 114 1 0 4 0 1 258 313 0 58 7 8 282 339 17 269 5 6 116 0 1 627 1 3 378 0 3 60 chain 45469 chr5 180915260 + 37279913 37280428 MER9a2 513 - 0 513 62526 68 2 0 445 chain 25670 chr5 180915260 + 37282318 37282625 THE1B-int 1605 - 0 310 101404 227 1 3 54 0 1 25 chain 29735 chr5 180915260 + 37293819 37294134 AluYb9 318 + 0 315 85712 315 chain 144690 chr5 180915260 + 37295141 37296790 SVA_D 2077 + 0 2061 25370 20 1 7 11 0 18 50 0 3 578 0 40 151 0 310 151 2 1 12 0 49 459 10 0 70 3 0 131 chain 22912 chr5 180915260 + 37331403 37331680 AluSp 311 + 10 286 116051 11 1 0 265 chain 15055 chr5 180915260 + 37357288 37357526 AluJb 308 + 63 307 141153 61 24 33 112 12 9 29 chain 10801 chr5 180915260 + 37376048 37376223 MER30 238 + 35 236 156983 68 4 0 7 15 48 41 3 0 37 chain 14511 chr5 180915260 + 37376981 37377150 MER75 514 + 95 264 142850 169 chain 24913 chr5 180915260 + 37384488 37384789 AluY 311 + 0 309 105253 46 0 8 78 0 1 143 2 1 32 chain 5775 chr5 180915260 + 37390362 37390431 MER41A 554 - 86 155 187388 69 chain 23144 chr5 180915260 + 37413553 37413839 AluSc5 308 + 11 296 114923 184 3 2 99 chain 154205 chr5 180915260 + 37414886 37416667 SVA_D 2077 - 1 2077 24074 450 0 1 220 0 303 42 30 26 41 0 1 38 1 2 4 5 0 5 8 0 25 2 0 15 2 0 12 0 13 699 0 2 158 5 0 19 chain 26710 chr5 180915260 + 37427209 37427518 AluYk4 311 + 0 309 97288 309 chain 4595 chr5 180915260 + 37445577 37445627 L1PA5 6144 - 2429 2479 195554 50 chain 210561 chr5 180915260 + 37445627 37448033 L1PA5 6144 + 3717 6128 18462 413 0 1 116 1 0 4 0 1 1020 2 1 18 0 4 290 4 5 538 chain 46283 chr5 180915260 + 37449860 37450406 L1PA7 6471 - 10 556 61784 9 1 0 98 0 1 438 chain 24892 chr5 180915260 + 37450991 37451287 AluSp 311 - 6 299 105397 16 3 0 277 chain 45332 chr5 180915260 + 37453264 37453776 MER9a2 513 - 0 513 62679 453 0 1 59 chain 138971 chr5 180915260 + 37457950 37459475 L1P1 4361 - 239 1764 26310 1525 chain 124571 chr5 180915260 + 37459475 37460801 L1HS 6032 + 4702 6028 29485 1326 chain 22619 chr5 180915260 + 37467850 37468115 AluYk4 311 - 44 311 117493 66 8 10 191 chain 2596 chr5 180915260 + 37471735 37471886 L1ME3A 1206 - 814 964 231753 16 4 3 12 1 0 14 85 86 19 chain 108355 chr5 180915260 + 37480829 37482360 THE1B-int 1605 - 10 1592 34601 71 0 5 111 8 9 93 0 5 53 0 6 78 0 14 196 5 0 115 11 12 120 7 13 142 11 18 74 5 69 83 60 0 28 0 6 14 0 1 246 chain 135913 chr5 180915260 + 37483203 37484697 SVA_C 1631 - 0 1626 26855 626 0 1 54 1 0 25 0 127 777 0 5 11 chain 3838 chr5 180915260 + 37495026 37495178 MER58A 224 + 29 181 209818 34 1 0 14 83 84 20 chain 24335 chr5 180915260 + 37501140 37501493 L1PB3 3668 - 593 955 108448 34 0 2 32 0 1 18 2 0 36 11 7 119 0 6 32 8 14 61 chain 31507 chr5 180915260 + 37513632 37514057 MLT2A1 477 - 10 477 81631 27 15 55 74 12 15 92 1 2 22 0 1 8 3 0 171 chain 88157 chr5 180915260 + 37518788 37519839 SVA_A 1864 - 0 1040 40317 154 4 3 392 1 2 68 2 0 37 2 0 64 1 0 46 2 0 24 0 1 86 2 0 102 1 0 8 2 0 53 chain 15191 chr5 180915260 + 37521463 37521800 L1PB1 5432 - 10 317 140801 18 1 0 12 1 0 22 1 0 20 13 11 7 1 0 7 2 0 13 22 12 4 1 0 15 1 0 44 1 0 12 6 5 52 2 0 8 4 0 16 3 2 4 1 0 23 chain 534736 chr5 180915260 + 37522606 37528739 L1PA5 6144 + 3 6142 3625 683 1 2 35 1 0 1300 2 1 287 0 2 63 0 1 659 1 0 207 1 0 37 1 0 593 0 1 424 1 0 43 0 4 283 1 0 7 1 0 447 0 1 208 0 4 847 chain 4850 chr5 180915260 + 37534188 37534245 L1PBa 3878 + 316 373 196780 57 chain 132649 chr5 180915260 + 37548045 37549959 L1MA2 4263 - 150 2053 27487 9 1 0 46 7 0 92 1 0 9 2 1 90 10 9 56 1 0 50 0 4 41 0 1 4 41 43 73 5 1 10 3 0 385 1 2 160 11 12 104 4 10 200 5 0 206 3 0 54 4 0 7 0 4 8 0 2 59 21 20 98 1 0 4 0 1 28 chain 172938 chr5 180915260 + 37562548 37564679 SVA_D 2077 - 2 2059 21718 97 0 4 44 8 0 492 2 1 217 0 1 167 1 0 6 35 10 6 1 0 42 2 0 17 48 0 24 13 0 30 3 1 155 3 0 33 0 3 86 0 40 390 1 0 162 17 0 29 chain 2792 chr5 180915260 + 37563582 37563617 SVA_D 2077 - 905 940 75940 35 chain 3829 chr5 180915260 + 37563685 37563733 SVA_D 2077 - 1006 1057 75940 3 0 1 29 0 1 9 0 1 7 chain 23517 chr5 180915260 + 37573492 37573757 L1PA4 6152 - 9 274 113033 265 chain 20478 chr5 180915260 + 37586513 37586758 L1PA7 6471 - 1 245 125688 172 2 1 71 chain 175683 chr5 180915260 + 37593263 37595310 L1PA6 6164 - 2 2067 21378 15 1 0 176 0 8 612 2 0 29 0 4 146 0 5 510 0 5 154 1 0 401 chain 40131 chr5 180915260 + 37601856 37602334 L1PA7 6471 + 5994 6468 69136 125 0 1 337 5 0 11 chain 54747 chr5 180915260 + 37621619 37622235 L1PA4 6152 - 789 1405 55872 180 0 1 36 1 0 399 chain 67225 chr5 180915260 + 37622244 37622998 L1PA4 6152 + 5391 6146 49557 426 3 4 325 chain 23129 chr5 180915260 + 37635853 37636224 THE1C 375 + 0 375 114999 76 0 6 104 8 7 10 39 39 108 6 5 20 chain 4682 chr5 180915260 + 37642534 37642652 L1MA3 4352 - 26 135 198730 11 2 1 26 8 6 24 2 0 15 18 14 12 chain 531495 chr5 180915260 + 37651066 37657551 L1PA7 6471 - 1 6471 4023 356 9 7 248 0 3 55 0 4 176 1 0 118 0 1 57 0 15 99 0 4 342 1 0 446 0 1 512 0 1 526 4 0 444 0 1 321 4 0 99 1 2 151 0 1 174 0 1 29 0 1 104 0 5 112 1 0 93 0 5 556 0 5 7 8 3 41 3 2 261 4 2 267 1 0 255 49 0 149 1 2 233 4 9 21 0 1 142 chain 519103 chr5 180915260 + 37674342 37680093 L1PA3long 6157 - 0 5763 5253 28 0 5 105 0 3 6 2 0 2067 0 1 1252 1 0 28 0 1 78 0 3 139 0 1 1462 0 1 263 0 7 10 7 0 303 chain 516903 chr5 180915260 + 37688815 37694942 L1PA6 6164 + 0 6149 5495 147 2 0 420 1 0 27 0 1 501 0 1 492 0 3 538 15 0 203 0 1 67 0 4 28 0 3 24 0 1 58 0 2 61 0 4 360 0 1 155 6 11 84 0 1 233 11 0 274 0 2 187 0 1 4 1 0 247 1 0 35 0 1 188 0 4 126 0 2 345 0 5 299 3 5 159 1 5 13 7 10 507 0 2 297 chain 17437 chr5 180915260 + 37739761 37739961 L1PA7 6471 - 14 214 134417 200 chain 470707 chr5 180915260 + 37743207 37749648 L1PA8A 6298 + 40 6290 8013 18 2 1 7 3 0 7 71 57 6 1 0 13 1 0 7 36 33 15 2 0 4 1 0 12 53 37 8 1 0 49 1 0 14 8 2 10 1 10 4 0 1 53 2 0 13 2 1 10 1 0 3 1 0 131 6 0 7 4 10 490 4 3 23 0 4 8 27 27 292 8 5 11 1 0 443 0 12 174 3 0 188 0 3 101 4 0 383 5 9 272 1 0 293 0 5 43 1 0 69 0 4 273 1 2 145 9 8 100 1 0 4 4 5 97 232 2 263 0 13 500 1 0 70 0 1 30 0 22 37 3 7 230 2 0 93 1 0 139 5 12 70 0 2 392 15 20 35 0 1 53 0 1 62 0 8 38 5 0 6 0 5 22 7 12 13 0 1 51 chain 27531 chr5 180915260 + 37757064 37757365 AluY 311 + 2 304 94571 124 0 1 177 chain 10727 chr5 180915260 + 37760473 37761201 MER57A-int 1588 - 780 1549 157294 23 16 8 24 231 193 7 2 0 72 195 177 42 22 149 25 46 26 23 chain 25022 chr5 180915260 + 37775492 37775799 AluSc8 310 + 0 309 104672 32 1 0 92 3 6 179 chain 37054 chr5 180915260 + 37778164 37778620 LTR2 463 - 0 463 73450 140 0 1 192 0 3 69 0 3 55 chain 423545 chr5 180915260 + 37778620 37783727 Harlequin-int 5206 - 0 5081 9454 238 8 9 55 20 6 100 2 1 285 0 14 707 1 0 115 1 0 10 0 1 514 1 3 207 19 1 373 4 1 1358 0 3 513 0 5 9 1 0 196 13 3 173 1 0 12 3 0 158 0 1 10 chain 36740 chr5 180915260 + 37785801 37786259 LTR2 463 - 0 463 73896 16 7 6 311 0 3 69 0 3 55 chain 31814 chr5 180915260 + 37793406 37793826 MLT2A1 477 + 0 477 81140 59 0 6 103 5 2 225 1 43 8 0 8 13 0 4 6 chain 341913 chr5 180915260 + 37793826 37798307 HERVL-int 5654 + 0 4171 11835 145 1 0 25 0 2 1020 0 1 184 318 0 107 17 0 10 1 2 121 6 7 154 1 5 392 4 0 378 0 22 660 5 7 79 0 1 280 1 2 52 0 1 89 6 0 425 chain 5128 chr5 180915260 + 37799896 37799954 MER45A 178 + 112 170 193807 58 chain 3832 chr5 180915260 + 37850831 37850878 MER58B 340 - 9 56 209897 47 chain 25146 chr5 180915260 + 37869147 37869511 THE1B 368 - 0 368 104025 119 33 35 14 1 4 27 1 0 169 chain 71545 chr5 180915260 + 37911101 37912135 L1MA2 4263 + 3012 4040 47675 5 3 0 240 0 3 174 10 3 87 0 1 41 1 0 18 6 2 40 0 3 33 1 0 79 0 1 51 17 14 63 1 3 51 29 33 9 1 0 74 chain 6845 chr5 180915260 + 37918516 37918596 L1PA8 5853 + 5769 5849 178624 80 chain 72564 chr5 180915260 + 37942982 37943789 L1PA4 6152 + 5330 6143 47236 274 0 6 533 chain 43812 chr5 180915260 + 37959382 37959895 MER9a3 513 + 0 513 64436 15 1 2 154 1 0 342 chain 41446 chr5 180915260 + 38005776 38006462 L1PB1 5432 - 7 680 67353 5 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 34 51 44 1 0 16 3 2 52 27 20 13 1 0 22 23 9 85 0 1 248 2 1 16 chain 27219 chr5 180915260 + 38007422 38007797 THE1C 375 - 0 375 95525 26 1 0 100 7 6 37 0 3 13 6 5 185 chain 4448 chr5 180915260 + 38048644 38048694 MLT1J1 437 + 46 96 201369 50 chain 43599 chr5 180915260 + 38065607 38066227 L1PA13 3608 - 164 823 64685 59 8 0 23 1 0 27 1 0 62 2 0 46 0 4 53 0 1 9 1 0 28 11 0 210 0 5 6 10 5 25 0 58 38 chain 6629 chr5 180915260 + 38073253 38073332 MER74A 558 - 0 79 180250 79 chain 59535 chr5 180915260 + 38076701 38077359 L1PA4 6152 + 5491 6150 53085 547 0 1 111 chain 46584 chr5 180915260 + 38099706 38100333 MER41B 635 + 0 627 61541 127 1 2 269 4 3 60 0 7 6 15 7 26 0 1 119 chain 18199 chr5 180915260 + 38116065 38116283 AluY 311 + 79 301 132330 53 0 1 6 2 5 157 chain 13555 chr5 180915260 + 38123389 38123562 THE1D-int 1627 - 0 175 146154 34 0 3 13 1 0 125 chain 4475 chr5 180915260 + 38130500 38130553 MER5A1 166 - 75 128 201071 53 chain 43758 chr5 180915260 + 38146380 38146985 Tigger3b 1229 + 219 850 64500 6 1 0 28 23 38 4 1 0 16 0 2 15 2 0 8 0 5 228 1 0 4 1 13 184 3 0 80 chain 21063 chr5 180915260 + 38158536 38158831 L1PA8 5853 - 0 289 123682 90 1 0 22 2 1 52 1 0 9 2 1 70 2 0 44 chain 548813 chr5 180915260 + 38169606 38175629 L1PA3long 6157 - 5 6157 1599 5243 0 128 628 0 1 152 chain 20026 chr5 180915260 + 38181689 38181933 L1PA7 6471 + 6227 6470 127058 45 2 0 35 1 2 161 chain 3313 chr5 180915260 + 38194394 38194435 THE1D 372 - 107 148 218724 41 chain 11074 chr5 180915260 + 38216874 38217056 MER30 238 - 28 238 155916 72 2 0 9 6 29 62 13 20 18 chain 244014 chr5 180915260 + 38221945 38225019 L1PA4 6152 + 3385 6143 16559 61 1 0 1188 0 1 209 7 0 39 307 0 396 1 0 723 1 0 141 chain 115433 chr5 180915260 + 38234359 38235923 THE1C-int 1605 + 18 1574 32631 74 0 1 22 1 55 48 0 1 226 84 11 64 1 0 228 4 13 29 3 4 780 chain 25141 chr5 180915260 + 38247062 38247360 AluSx4 309 + 8 309 104064 12 0 3 286 chain 23483 chr5 180915260 + 38290901 38291202 AluY 311 + 0 301 113201 105 0 1 20 2 1 26 4 1 24 1 0 79 0 4 40 chain 40928 chr5 180915260 + 38332565 38333074 MER9a3 513 - 0 513 68001 77 1 2 323 10 11 80 0 2 18 chain 7844 chr5 180915260 + 38333823 38333973 L1PA14 3548 - 65 203 172052 18 1 0 10 6 0 41 1 0 7 10 9 5 1 0 15 4 2 31 chain 3208 chr5 180915260 + 38342908 38342962 Charlie7a 264 - 78 134 220763 15 6 8 33 chain 24824 chr5 180915260 + 38343234 38343528 AluSq2 311 + 11 304 105749 117 1 0 176 chain 7824 chr5 180915260 + 38361625 38361735 MER30 238 - 0 112 172163 44 3 0 26 1 7 22 1 0 13 chain 18885 chr5 180915260 + 38392799 38393010 L1PA5 6144 - 12 223 130407 211 chain 29144 chr5 180915260 + 38415783 38416153 THE1C 375 - 0 375 88347 188 1 2 46 0 4 135 chain 4062 chr5 180915260 + 38420184 38420228 MIR 256 - 154 198 206448 44 chain 7277 chr5 180915260 + 38442856 38442971 MER41D 557 + 0 114 175611 43 6 2 50 0 5 8 2 0 6 chain 27004 chr5 180915260 + 38461985 38462293 AluYf4 310 + 0 305 96269 123 3 0 182 chain 73315 chr5 180915260 + 38516407 38517312 L1PA7 6471 + 5553 6465 46876 68 2 0 18 1 0 54 4 12 603 5 6 106 10 11 34 chain 52511 chr5 180915260 + 38518536 38519433 Tigger3b 1229 + 24 954 57297 141 3 4 19 34 37 69 1 0 30 8 10 103 0 1 125 14 16 38 0 7 31 0 2 36 8 6 11 6 8 49 63 67 12 6 18 90 chain 10229 chr5 180915260 + 38547858 38548034 Tigger3a 397 - 64 239 159477 76 3 0 14 1 0 5 14 16 34 6 7 23 chain 23326 chr5 180915260 + 38578297 38578575 AluSp 311 - 1 279 114052 278 chain 40127 chr5 180915260 + 38599898 38600493 MER4B 649 + 0 640 69142 24 36 37 90 6 48 40 2 0 95 0 13 17 5 0 60 2 1 50 2 1 88 1 0 69 1 0 7 chain 3632 chr5 180915260 + 38617383 38617428 L1ME1 1623 - 344 389 213114 45 chain 37268 chr5 180915260 + 38620980 38621390 L1PA4 6152 + 5741 6151 73139 410 chain 553444 chr5 180915260 + 38625701 38631849 L1PA3long 6157 - 0 6156 1009 140 7 0 160 1 0 533 0 10 678 0 1 727 0 1 482 1 3 251 1 0 57 0 1 240 1 0 182 0 1 482 0 2 2205 chain 26923 chr5 180915260 + 38635539 38635839 AluYf4 310 - 9 310 96540 126 0 1 174 chain 28526 chr5 180915260 + 38644570 38644945 THE1C 375 + 2 375 91071 123 9 6 56 0 1 187 chain 23062 chr5 180915260 + 38663863 38664147 AluSc 308 + 8 294 115341 144 7 9 133 chain 9632 chr5 180915260 + 38691128 38691290 MSTA 426 - 226 426 162428 44 23 60 28 3 4 64 chain 490266 chr5 180915260 + 38699930 38706145 L1PA7 6471 + 495 6453 7352 125 8 6 72 2 0 279 0 1 166 0 1 90 0 4 32 7 5 57 5 6 5 0 1 960 5 13 552 0 1 225 1 0 41 0 1 18 314 0 97 0 8 505 0 1 169 1 0 637 1 0 3 0 1 94 0 4 143 0 4 285 0 27 487 1 0 39 0 1 475 0 1 174 3 5 137 chain 5948 chr5 180915260 + 38717548 38717637 MER96B 391 + 221 306 185703 38 4 0 13 0 1 21 1 0 12 chain 5254 chr5 180915260 + 38727186 38727249 THE1D 372 - 309 372 192478 63 chain 27487 chr5 180915260 + 38759730 38760341 L1PB1 5432 + 4933 5424 94691 87 0 2 81 108 11 24 1 0 9 27 20 53 2 1 16 1 0 42 2 1 16 1 0 4 1 0 13 42 34 26 1 0 18 1 0 13 1 0 16 1 0 4 chain 41457 chr5 180915260 + 38763374 38763913 MLT2A2 560 + 9 560 67340 167 4 3 148 1 0 4 0 1 65 5 16 8 0 1 35 0 1 102 chain 6670 chr5 180915260 + 38773218 38773363 MER53 195 + 37 181 179904 27 51 50 67 chain 117011 chr5 180915260 + 38786017 38787628 THE1B-int 1605 + 18 1605 32122 95 5 8 309 38 21 170 9 11 50 1 0 6 30 31 80 14 1 180 0 1 138 7 8 5 1 0 56 9 8 211 0 1 197 chain 24467 chr5 180915260 + 38788245 38788541 AluSp 311 - 4 300 107721 296 chain 86827 chr5 180915260 + 38821831 38823089 LTR12D 1347 + 6 1347 40847 233 13 42 16 0 36 203 0 31 17 41 0 53 41 0 72 23 0 130 12 7 140 0 97 264 chain 3632 chr5 180915260 + 38822407 38822448 LTR12D 1347 + 487 528 190123 41 chain 29168 chr5 180915260 + 38852822 38853132 AluYk12 309 - 0 309 88215 191 1 0 118 chain 164458 chr5 180915260 + 38861219 38863315 SVA_D 2077 - 0 2077 22750 13 4 0 133 1 0 204 0 3 225 126 0 98 8 0 5 0 8 168 0 1 33 20 0 98 2 54 86 45 5 26 2 1 13 2 0 18 0 1 290 0 116 413 6 8 57 chain 9217 chr5 180915260 + 38861799 38861925 SVA_D 2077 - 803 930 66545 2 0 1 24 1 0 4 0 1 95 chain 4254 chr5 180915260 + 38862443 38862488 SVA_D 2077 - 775 820 132456 45 chain 24888 chr5 180915260 + 38868475 38868820 THE1A 353 + 9 353 105419 102 1 0 60 10 10 46 8 8 118 chain 6462 chr5 180915260 + 38907137 38907241 L1P4 1494 + 271 391 181536 35 8 23 5 3 0 11 0 4 42 chain 118970 chr5 180915260 + 38926824 38928431 THE1C-int 1605 - 7 1605 31428 423 7 8 33 0 1 12 0 2 5 2 0 77 9 17 232 0 17 10 8 2 186 38 10 111 0 7 173 9 1 234 6 5 32 chain 27411 chr5 180915260 + 38928450 38928803 THE1C 375 - 20 375 94930 173 0 1 42 0 4 15 3 0 120 chain 15224 chr5 180915260 + 38930848 38931155 MER65A 464 - 90 406 140704 60 3 0 73 11 22 27 45 7 36 23 61 10 1 2 18 chain 18900 chr5 180915260 + 38968856 38970269 Tigger3b 1229 + 338 1145 130368 28 106 97 54 0 2 11 1015 410 51 0 2 12 5 9 131 chain 2989 chr5 180915260 + 38975067 38975100 MADE1 96 + 7 40 225244 33 chain 160474 chr5 180915260 + 38986742 38988710 L1PA7 6471 - 1919 3920 23275 303 8 6 294 0 1 165 1 2 6 0 11 211 0 4 44 4 2 21 0 4 379 0 4 158 0 6 33 5 9 250 1 3 85 chain 151855 chr5 180915260 + 38988710 38990594 L1PA7 6471 + 4550 6466 24345 121 0 4 280 0 1 262 3 0 65 7 0 8 0 7 28 0 13 282 0 3 269 2 1 71 7 17 57 0 1 4 4 3 84 1 0 174 7 0 8 0 15 131 2 0 7 chain 3653 chr5 180915260 + 38995262 38995302 L1PB2 3958 + 3798 3838 212734 40 chain 26115 chr5 180915260 + 39004878 39005182 AluSp 311 - 7 311 99551 304 chain 16097 chr5 180915260 + 39010089 39010460 THE1C 375 + 0 327 138072 15 2 0 32 0 6 17 117 69 40 0 3 8 19 16 121 chain 115073 chr5 180915260 + 39010524 39012111 THE1C-int 1605 + 15 1599 32765 27 5 6 49 1 59 17 2 0 272 86 12 145 1 0 98 0 25 8 19 0 12 0 9 282 1 2 136 1 0 369 0 1 5 6 5 45 chain 12253 chr5 180915260 + 39022189 39022348 MER47A 366 + 165 323 151197 153 1 0 5 chain 29236 chr5 180915260 + 39028274 39028583 AluYa5 310 - 1 310 87875 309 chain 546541 chr5 180915260 + 39034431 39040567 L1PA4 6152 + 0 6140 1877 708 12 5 613 9 12 102 0 3 2030 1 0 881 0 4 427 0 1 1271 0 1 82 chain 27770 chr5 180915260 + 39053712 39054008 AluYf4 310 + 0 296 93799 296 chain 28562 chr5 180915260 + 39070285 39070594 AluYb8 318 + 0 305 90912 118 4 0 187 chain 16677 chr5 180915260 + 39092108 39092454 THE1D 372 + 15 372 136472 41 31 23 85 61 75 31 8 18 32 5 0 52 chain 2394 chr5 180915260 + 39144449 39144573 L1MC5 759 + 585 710 234259 15 29 32 15 43 41 22 chain 7314 chr5 180915260 + 39166575 39166664 L1PB4 2604 + 2268 2357 175340 89 chain 17704 chr5 180915260 + 39198616 39198864 MER47A 366 + 0 287 133694 8 1 0 4 0 1 21 1 0 50 4 43 145 0 1 14 chain 52895 chr5 180915260 + 39232670 39233258 L1PA2 6032 - 6 590 57082 7 4 0 577 chain 48182 chr5 180915260 + 39234567 39235152 L1PA8 5853 + 5267 5848 60337 297 1 0 20 0 2 24 2 0 69 1 0 9 1 0 72 1 0 88 chain 259969 chr5 180915260 + 39242243 39245171 L1PA5 6144 - 0 2930 15703 2263 0 2 665 chain 18791 chr5 180915260 + 39261170 39261387 L1PA8A 6298 + 6072 6289 130710 217 chain 24375 chr5 180915260 + 39272486 39272797 AluY 311 + 2 307 108219 116 8 0 14 0 1 143 1 2 29 chain 28188 chr5 180915260 + 39273093 39273422 SVA_D 2077 + 1309 1740 92346 37 5 107 287 chain 537620 chr5 180915260 + 39275846 39281979 L1PA5 6144 - 2 6141 3214 847 0 4 719 0 2 143 0 1 484 1 0 267 1 0 1028 0 1 2643 chain 4485 chr5 180915260 + 39297055 39297106 L1MA6 2487 + 547 598 200965 51 chain 118625 chr5 180915260 + 39316963 39318641 L1PA11 4918 - 289 1918 31568 18 47 33 11 2 0 13 1 0 13 46 34 19 1 0 14 2 0 67 2 0 12 1 0 67 5 0 192 8 13 67 1 0 4 0 1 385 5 0 178 0 3 50 4 0 187 8 0 248 chain 117406 chr5 180915260 + 39333724 39335097 SVA_D 2077 + 45 1740 31992 829 40 0 38 9 273 118 0 98 339 chain 533559 chr5 180915260 + 39343170 39349283 L1PA5 6144 + 18 6143 3758 11 0 2 197 0 1 4 1 0 179 0 2 12 0 1 432 0 1 363 0 1 593 0 1 326 2 1 536 0 3 1794 0 2 147 0 1 1361 1 0 154 chain 23691 chr5 180915260 + 39367529 39367819 AluSq10 312 + 0 288 112080 111 3 1 176 chain 23719 chr5 180915260 + 39403992 39404264 L1PA4 6152 - 261 535 111944 106 0 2 166 chain 20837 chr5 180915260 + 39404264 39404498 L1PA4 6152 + 5909 6143 124496 234 chain 17573 chr5 180915260 + 39417186 39417411 L1PA7 6471 + 6241 6469 134069 65 0 6 146 3 0 11 chain 5183 chr5 180915260 + 39435378 39435690 MLT1C 463 + 73 388 193207 41 160 165 19 59 57 33 chain 20956 chr5 180915260 + 39438396 39438760 THE1B 368 + 3 368 124079 67 54 53 49 24 25 32 0 2 62 1 0 75 chain 27991 chr5 180915260 + 39481243 39481550 AluYf4 310 - 6 310 93030 173 3 0 131 chain 16066 chr5 180915260 + 39511059 39511269 L1PA7 6471 + 6260 6469 138161 53 9 10 136 2 0 10 chain 3860 chr5 180915260 + 39550629 39550687 LTR16B 463 - 137 194 209460 15 5 4 38 chain 44411 chr5 180915260 + 39553405 39553905 L1PA4 6152 + 5651 6151 63681 500 chain 13721 chr5 180915260 + 39566508 39566684 L1PA8 5853 - 0 174 145537 90 4 3 68 1 0 13 chain 3313 chr5 180915260 + 39576770 39576925 L1ME1 1623 + 181 335 218717 35 102 101 18 chain 6064 chr5 180915260 + 39583676 39583743 L1PA5 6144 - 4 71 184710 67 chain 5291 chr5 180915260 + 39585946 39586044 MADE1 96 - 0 96 192105 23 1 2 4 1 0 22 9 7 38 chain 276226 chr5 180915260 + 39594791 39598667 L1PA10 4194 - 47 3944 14861 30 3 0 51 0 1 103 57 85 103 0 80 326 3 4 5 1 0 181 1 0 4 4 5 149 0 1 63 29 20 67 15 0 245 0 1 1064 0 3 213 0 9 15 0 6 131 6 7 140 0 1 67 0 1 166 46 0 308 6 4 53 13 13 19 1 0 8 4 0 15 1 0 7 116 88 14 2 0 21 chain 24649 chr5 180915260 + 39612985 39613280 AluSg7 307 + 11 307 106724 115 0 1 180 chain 4814 chr5 180915260 + 39621678 39621734 MER52D 1964 - 813 869 197189 56 chain 17452 chr5 180915260 + 39626011 39626373 THE1B 368 - 1 368 134372 55 13 12 13 1 0 26 86 92 52 9 10 107 chain 23514 chr5 180915260 + 39627045 39627333 AluY 311 + 11 295 113044 37 16 11 73 0 1 162 chain 14750 chr5 180915260 + 39638195 39638398 MER2 342 - 0 210 142101 43 5 7 118 0 5 37 chain 7123 chr5 180915260 + 39644599 39644722 L1P4 1494 + 1324 1443 176590 26 1 0 40 2 0 20 13 12 21 chain 70800 chr5 180915260 + 39652510 39653429 LTR12 884 - 15 884 48012 491 50 0 38 0 1 314 1 0 25 chain 18090 chr5 180915260 + 39653555 39653796 HUERS-P3b-int 2065 - 1814 2052 132619 157 9 6 75 chain 72796 chr5 180915260 + 39653892 39654878 HUERS-P3b-int 2065 + 218 1347 47127 96 0 1 120 0 10 128 4 5 109 4 0 66 0 1 4 21 19 51 1 0 22 1 0 173 0 139 30 0 1 7 4 1 19 1 2 125 chain 29310 chr5 180915260 + 39667145 39667462 AluYb8 318 + 0 315 87515 156 2 0 159 chain 3899 chr5 180915260 + 39667469 39667515 MLT2B1 522 - 413 459 208873 46 chain 12265 chr5 180915260 + 39670388 39670658 L1PB1 5432 - 12 259 151131 16 1 0 13 1 0 21 5 4 20 2 0 15 1 0 4 3 1 18 16 6 8 2 0 13 1 0 43 24 22 43 chain 522656 chr5 180915260 + 39682622 39688707 L1PA5 6144 - 3 6144 4900 141 5 0 13 1 6 949 0 1 1875 0 2 880 1 2 277 4 0 183 10 6 1025 4 5 156 8 30 402 1 38 150 chain 22854 chr5 180915260 + 39725215 39725495 AluSp 311 + 34 303 116311 254 11 0 15 chain 27869 chr5 180915260 + 39753666 39753988 L1PA7 6471 - 448 770 93459 322 chain 36970 chr5 180915260 + 39753988 39754426 L1PA7 6471 + 6015 6453 73551 438 chain 8482 chr5 180915260 + 39785700 39785838 LTR12 884 - 506 752 168396 38 24 132 76 chain 4945 chr5 180915260 + 39785838 39785895 LTR12 884 - 621 678 195748 57 chain 560394 chr5 180915260 + 39787754 39793773 L1PA2 6032 + 3 6021 333 739 1 0 5279 chain 24474 chr5 180915260 + 39802896 39803175 AluYk4 311 + 0 283 107682 58 0 4 221 chain 9665 chr5 180915260 + 39812088 39812317 Tigger4b 360 + 3 249 162270 33 78 95 32 0 1 7 6 5 73 chain 87041 chr5 180915260 + 39828155 39829186 LTR5A 1029 - 0 1029 40759 182 0 4 60 9 12 265 0 6 351 15 0 149 chain 19950 chr5 180915260 + 39838469 39838793 THE1D 372 + 0 332 127303 57 5 6 96 31 36 11 13 15 111 chain 29858 chr5 180915260 + 39859125 39859528 MLT2A1 477 - 68 477 85255 24 18 0 113 0 18 74 0 1 5 1 5 26 0 1 142 chain 47232 chr5 180915260 + 39904538 39905088 L1PA5 6144 + 5569 6128 61017 166 0 8 62 0 1 322 chain 333041 chr5 180915260 + 39907417 39911350 L1PA5 6144 + 0 6138 12087 47 0 11 79 1 2 86 1 2 123 11 12 559 0 4 906 6 2183 181 0 2 147 0 4 1027 0 2 113 0 1 319 1 2 326 chain 68057 chr5 180915260 + 39915994 39916739 L1PA3long 6157 - 882 1627 48983 745 chain 79771 chr5 180915260 + 39916739 39917616 L1PA3long 6157 + 5277 6156 43700 109 0 2 768 chain 3544 chr5 180915260 + 39927502 39927541 MER73 639 + 585 624 214655 39 chain 31548 chr5 180915260 + 39939478 39940675 L1PB1 5432 - 6 699 81568 4 1 0 18 1 0 11 1 0 23 1 0 26 2 0 12 1 0 5 3 1 15 45 32 19 41 44 47 3 1 9 5 1 14 1 0 31 585 99 56 0 1 193 0 7 24 chain 267611 chr5 180915260 + 39951176 39954832 L1PA10 4194 + 313 4161 15312 22 2 0 11 9 8 9 1 0 11 1 0 6 1 0 15 7 0 8 1 0 84 3 0 10 6 3 115 3 0 5 0 3 76 0 1 186 1 0 293 11 1 276 7 208 74 0 1 249 8 9 57 0 1 157 0 15 402 0 1 33 4 0 18 12 13 14 1 3 22 0 1 452 6 1 96 15 16 211 0 1 38 3 4 109 2 0 294 0 1 118 1 11 25 9 5 34 1 0 11 chain 27357 chr5 180915260 + 39972008 39972377 MLT2A1 477 - 93 475 95090 9 0 4 48 1 0 17 6 11 121 6 10 21 0 1 140 chain 296414 chr5 180915260 + 39972379 39976097 HERVL-int 5654 - 0 3787 13623 37 20 9 165 5 9 56 0 1 118 2 3 37 5 0 58 5 9 121 0 1 96 0 1 929 1 2 493 11 12 199 1 3 221 0 64 287 5 8 189 1 0 131 0 1 453 17 19 55 chain 12283 chr5 180915260 + 39980360 39980542 MER107 203 + 0 188 151070 39 0 6 8 6 0 111 1 7 17 chain 26921 chr5 180915260 + 40002386 40002944 L1PB1 5432 - 15 569 96548 12 2 1 12 1 0 23 2 1 22 2 0 14 1 0 10 16 26 15 1 0 41 23 20 51 113 107 161 0 2 36 chain 126242 chr5 180915260 + 40011589 40013001 L1PA5 6144 - 605 2017 29020 226 1 0 616 0 1 569 chain 53028 chr5 180915260 + 40013001 40013593 L1PA5 6144 + 5551 6143 56997 592 chain 3113 chr5 180915260 + 40028087 40028125 L1MA8 2339 - 81 119 222678 38 chain 13546 chr5 180915260 + 40060520 40060686 L1PA4 6152 + 5968 6133 146181 41 1 0 124 chain 35990 chr5 180915260 + 40090995 40091473 MER4-int 2692 + 794 1285 74911 62 4 0 10 0 4 76 0 1 38 0 1 24 0 5 52 1 8 30 1 0 180 chain 82048 chr5 180915260 + 40103010 40104070 MER11C 1089 + 0 1073 42743 251 8 9 57 0 4 214 2 1 154 0 4 42 1 2 152 0 1 76 16 15 28 1 5 58 chain 84798 chr5 180915260 + 40105261 40110820 HERVK11-int 2540 + 678 2235 41596 59 147 97 44 1 0 13 1 0 14 3964 80 16 59 43 21 2 0 65 10 9 23 19 18 8 3 0 27 11 1 12 1 0 25 14 3 26 25 8 420 25 20 68 1 0 37 1 0 183 13 12 69 16 20 116 chain 88569 chr5 180915260 + 40111810 40112872 MER11C 1089 + 0 1073 40161 251 0 1 65 0 4 369 0 4 43 0 1 148 0 1 186 chain 6387 chr5 180915260 + 40116255 40116338 MLT1A 405 - 23 106 182125 83 chain 508964 chr5 180915260 + 40125183 40131608 L1PA7 6471 - 6 6467 6246 6 3 0 150 4 2 157 13 14 316 0 1 197 2 0 220 0 1 120 1 0 329 1 0 272 0 4 54 1 2 91 0 5 36 0 1 73 5 8 97 0 1 478 0 1 204 4 5 4 1 0 262 4 7 340 5 8 344 0 1 18 16 0 150 2 1 179 0 4 332 0 3 62 0 23 665 1 5 808 3 4 117 0 1 278 chain 28480 chr5 180915260 + 40157350 40157647 AluYa5 310 - 13 310 91265 297 chain 4727 chr5 180915260 + 40157647 40157726 L1MA3 4352 - 137 215 198195 41 12 11 26 chain 30621 chr5 180915260 + 40173797 40174295 LTR2B 499 + 0 499 83167 14 1 0 35 25 37 21 6 5 6 6 0 4 2 0 128 5 0 7 1 6 45 0 1 32 7 6 70 1 0 82 chain 274595 chr5 180915260 + 40178471 40182276 L1PA7 6471 + 3026 6467 14944 40 0 2 27 1 5 252 1 2 5 1 0 137 2 1 25 314 0 291 1 4 1008 7 0 145 85 28 294 0 1 328 0 3 9 0 2 429 1 0 230 0 1 85 0 3 75 3 0 9 chain 13398 chr5 180915260 + 40207640 40207931 L1MA7 2200 + 1831 2084 146727 118 89 62 39 11 0 34 chain 11742 chr5 180915260 + 40218179 40218348 L1PB4 2604 - 46 218 153293 7 0 1 49 14 16 99 chain 19152 chr5 180915260 + 40225318 40225620 THE1B 368 - 66 368 129676 9 4 0 43 9 8 12 1 0 4 9 13 13 7 10 18 1 0 172 chain 6206 chr5 180915260 + 40234836 40234961 MER3 215 - 8 151 183535 19 25 40 10 4 0 28 0 7 39 chain 4919 chr5 180915260 + 40251374 40251430 MLT1A0 366 + 273 329 196068 56 chain 30082 chr5 180915260 + 40252746 40253148 LTR7 482 - 0 482 84553 156 0 10 22 0 31 38 0 1 109 9 47 68 chain 29414 chr5 180915260 + 40257360 40257672 AluYb8 318 - 6 318 87005 312 chain 14911 chr5 180915260 + 40273309 40273643 L1PB1 5432 - 5 318 141598 5 2 0 18 1 0 13 3 10 11 1 0 24 2 0 15 1 0 4 2 0 29 15 2 16 7 6 38 1 0 15 2 1 12 0 1 40 23 20 9 1 0 24 chain 439718 chr5 180915260 + 40296843 40302279 L1PA6 6164 - 2 5459 9062 6 4 0 329 0 1 559 0 1 74 23 1 156 0 7 24 2 3 561 0 1 29 3 5 39 0 4 89 0 1 4 1 0 40 0 1 164 1 2 388 1 0 172 0 1 47 0 1 100 0 3 110 0 1 458 55 55 314 0 5 1361 0 1 221 1 18 100 chain 141176 chr5 180915260 + 40326175 40328277 MER57-int 2662 - 0 2134 25958 7 2 0 26 48 40 7 1 0 23 77 58 46 0 1 16 10 5 10 1 0 90 22 13 411 3 0 292 11 50 95 23 24 12 1 14 12 7 6 33 0 2 262 0 4 15 1 15 195 5 13 141 1 0 196 chain 30717 chr5 180915260 + 40332093 40332522 MER57A1 433 - 4 432 83007 25 0 1 93 9 0 26 3 4 110 7 13 156 chain 500190 chr5 180915260 + 40336013 40342142 L1PA6 6164 + 0 6162 6829 60 1 4 383 16 6 81 1 2 23 10 12 226 5 22 319 1 0 323 0 1 85 0 12 158 8 5 1052 0 5 394 0 2 4 1 0 249 8 6 120 1 2 149 0 2 942 2 6 300 1 0 703 0 1 344 7 0 7 0 7 145 chain 13394 chr5 180915260 + 40342775 40343093 L1PB1 5432 + 5134 5420 146743 10 1 0 14 5 1 9 2 0 52 2 1 10 6 5 43 6 5 12 3 0 5 19 8 17 25 20 24 1 0 23 1 0 11 1 0 16 chain 24248 chr5 180915260 + 40363951 40364344 MSTA 426 + 0 426 108953 15 7 12 69 7 8 8 0 12 8 0 8 26 8 15 17 28 28 200 chain 20161 chr5 180915260 + 40364459 40365021 ERVL-B4-int 2334 + 140 709 126642 40 12 20 65 53 51 23 4 6 55 93 92 53 16 15 22 2 0 42 60 63 22 chain 504640 chr5 180915260 + 40417341 40423448 L1PA6 6164 - 4 6164 6565 256 0 1 161 0 22 90 2 1 446 0 1 24 4 11 52 0 1 159 0 1 121 0 1 458 0 2 6 3 1 17 6 6 581 0 1 550 0 1 4 1 2 406 4 1 130 6 24 54 1 0 236 1 2 611 0 1 162 14 15 5 0 2 461 2 1 607 6 5 460 chain 43593 chr5 180915260 + 40425375 40425871 MER9a2 513 + 13 513 64696 443 0 4 53 chain 24866 chr5 180915260 + 40435732 40436020 L1PA5 6144 - 0 286 105538 259 3 1 26 chain 120626 chr5 180915260 + 40438580 40440012 LTR12C 1709 + 1 1697 30832 649 0 278 159 13 0 24 1 0 5 3 1 107 0 4 22 1 0 106 1 0 341 chain 462366 chr5 180915260 + 40448086 40454367 L1PA8A 6298 - 7 6263 8308 98 10 9 97 1 0 4 0 1 512 0 2 10 5 6 53 7 10 627 0 1 4 1 0 701 3 0 72 0 2 174 0 13 17 1 2 205 0 1 189 1 0 25 0 2 5 1 0 55 1 2 14 31 25 593 1 5 211 1 3 39 0 1 329 2 1 4 0 1 62 0 3 25 0 1 103 4 5 10 2 3 461 0 1 223 0 3 34 4 2 94 1 2 30 0 8 290 8 4 32 0 1 255 1 0 77 19 16 14 2 0 77 8 0 7 27 26 31 2 0 8 5 0 16 1 0 7 17 14 13 7 4 15 2 0 12 1 0 7 1 0 12 2 1 9 2 1 17 6 0 12 24 18 21 7 1 5 2 0 6 3 0 11 1 0 16 1 0 5 chain 6296 chr5 180915260 + 40458219 40458418 MSTD 398 + 114 327 182831 55 109 123 35 chain 442875 chr5 180915260 + 40468844 40474935 L1PA3long 6157 - 0 6095 8962 1051 1 0 100 0 1 193 0 1 6 5 3 7 0 2 16 10 11 400 0 4 66 1 0 395 0 1 666 0 4 58 0 1 14 1 0 317 5 2 520 1 0 4 0 1 172 0 5 201 0 1 5 2 1 342 0 3 122 55 39 25 11 12 18 53 62 8 9 0 34 118 109 71 25 37 31 1 5 45 25 0 251 0 7 115 13 14 35 23 24 298 2 0 5 1 2 75 10 24 53 chain 3126 chr5 180915260 + 40493580 40493627 MLT1B 390 - 61 110 222419 11 2 4 34 chain 9468 chr5 180915260 + 40493780 40494024 L1PB1 5432 - 10 231 163227 18 1 0 12 5 4 18 1 0 17 12 10 11 15 12 9 9 0 11 2 0 4 1 0 16 1 0 43 1 0 12 9 8 16 chain 5804 chr5 180915260 + 40494625 40494749 L1PB1 5432 + 5109 5209 187099 5 3 0 22 1 0 20 23 5 7 2 0 41 chain 11848 chr5 180915260 + 40494813 40494963 THE1D 372 + 215 364 152841 125 1 0 24 chain 29546 chr5 180915260 + 40510023 40510365 L1PA5 6144 + 5800 6142 86431 342 chain 22310 chr5 180915260 + 40531960 40532298 THE1B 368 - 12 368 118876 106 0 3 47 4 0 17 1 0 4 5 6 4 1 0 58 11 16 31 5 20 44 chain 259168 chr5 180915260 + 40533475 40537289 L1PB1 5432 - 10 3806 15746 18 6 5 7 1 0 22 1 0 24 2 0 14 1 0 7 2 0 17 18 8 4 1 0 15 1 0 44 2 5 11 3 1 52 2 0 9 7 3 12 1 0 6 1 0 18 67 0 12 125 205 69 20 30 7 5 0 110 0 2 60 1 2 39 0 2 32 1 0 4 0 1 62 0 1 227 8 1 292 0 1 223 0 1 11 18 0 455 0 1 82 6 7 287 0 3 49 3 0 145 0 2 5 2 0 195 3 0 35 5 6 4 1 0 203 1 0 303 0 5 239 15 20 54 chain 558695 chr5 180915260 + 40541407 40547437 L1PA2 6032 + 0 6030 431 6030 chain 36875 chr5 180915260 + 40550733 40551249 L1PA11 4918 - 434 951 73689 10 2 0 66 4 3 11 2 1 62 5 0 138 0 3 29 0 1 28 2 1 127 0 7 30 chain 40833 chr5 180915260 + 40551459 40552000 MLT2A2 560 + 0 559 68127 38 1 0 368 9 20 40 2 8 15 0 1 36 0 1 32 chain 502870 chr5 180915260 + 40561501 40567622 L1PA6 6164 - 3 6164 6676 68 0 1 228 1 9 1493 0 4 1140 0 1 27 0 1 284 0 1 571 25 0 26 1 3 88 0 4 93 0 1 178 0 4 217 0 1 112 0 1 231 0 12 105 3 5 448 0 17 218 1 0 31 0 1 25 8 20 27 24 16 336 0 1 112 chain 14013 chr5 180915260 + 40578962 40579166 L1PA8 5853 + 5653 5853 144536 27 1 0 8 1 0 52 2 1 18 11 10 84 chain 17815 chr5 180915260 + 40590432 40590764 L1PA15 4387 - 59 380 133355 13 3 1 22 38 37 38 1 0 10 4 0 22 1 0 55 1 0 23 8 7 93 chain 26991 chr5 180915260 + 40603957 40604311 THE1A 353 - 0 353 96310 93 0 1 24 3 2 123 6 5 105 chain 7859 chr5 180915260 + 40615473 40615566 L1PA8 5853 - 0 93 171946 93 chain 1839 chr5 180915260 + 40629380 40630141 L1PA3long 6157 - 0 758 42480 19 3 0 129 3 4 585 1 0 21 chain 9668 chr5 180915260 + 40630141 40630248 L1PA3long 6157 + 5301 5408 161348 107 chain 17527 chr5 180915260 + 40632949 40633191 L1PB1 5432 + 4858 5103 134189 203 21 24 18 chain 501552 chr5 180915260 + 40634275 40640516 L1PA7 6471 + 0 6461 6753 219 0 10 13 0 1 549 0 1 75 0 2 266 16 17 76 1 5 431 4 5 76 8 7 499 0 1 118 4 5 57 10 6 245 4 7 4 0 1 880 4 6 151 0 2 204 0 1 83 0 13 23 8 138 8 0 45 380 0 1 37 0 4 97 0 24 9 25 2 576 0 1 9 0 2 274 0 3 31 0 2 54 0 1 425 18 9 270 chain 17029 chr5 180915260 + 40641947 40642238 Tigger2b_Pri 1066 + 766 1066 135515 86 15 18 32 1 8 96 29 28 32 chain 25203 chr5 180915260 + 40642582 40642847 AluYa5 310 - 10 275 103729 265 chain 111328 chr5 180915260 + 40643996 40645261 L1P1 4361 - 33 1297 33851 23 1 0 154 1 0 997 0 1 89 chain 33467 chr5 180915260 + 40645261 40645641 L1PA4 6152 + 5770 6151 78462 319 0 1 61 chain 4308 chr5 180915260 + 40648575 40648625 MLT1J1 437 - 323 373 203121 50 chain 30595 chr5 180915260 + 40651962 40652340 MLT2A1 477 - 95 477 83206 59 1 0 149 1 5 26 0 1 142 chain 8002 chr5 180915260 + 40652340 40652435 MER21A 919 + 477 572 171050 95 chain 71881 chr5 180915260 + 40655723 40656665 L1PB3 3668 + 2115 3057 47529 551 1 0 174 6 7 141 2 0 15 1 0 4 0 3 47 chain 30613 chr5 180915260 + 40662339 40662747 L1PA8 5853 + 5450 5848 83181 8 1 0 105 2 1 40 6 4 71 1 0 21 3 0 40 2 1 19 1 0 88 chain 1967 chr5 180915260 + 40662777 40663591 L1PA3long 6157 - 1072 1886 42480 814 chain 97019 chr5 180915260 + 40663591 40664659 L1PA3long 6157 + 5089 6157 37558 1068 chain 237589 chr5 180915260 + 40701912 40705634 L1PA14 3548 + 67 3456 16902 6 1 0 10 12 7 44 0 1 13 4 0 69 1 0 17 8 7 12 0 1 13 4 1 29 14 12 12 7 11 138 0 2 92 0 1 86 0 10 18 0 1 6 2 1 118 6 7 217 1 0 253 0 2 90 0 1 31 0 5 22 12 21 43 7 0 13 22 36 338 341 0 105 4 0 105 0 1 4 2 1 52 0 2 38 7 8 301 0 8 26 11 10 131 6 7 4 0 1 232 0 2 5 16 12 14 2 0 47 9 5 109 13 9 8 2 0 6 1 0 84 1 0 111 14 9 38 4 2 12 1 0 3 1 0 18 1 0 42 chain 380147 chr5 180915260 + 40706869 40711183 L1PA5 6144 + 1717 6138 10749 459 2 1 2616 0 108 1080 17 17 140 chain 106016 chr5 180915260 + 40722308 40723546 SVA_B 1603 + 307 1597 35254 29 0 14 307 0 40 190 1 0 42 1 0 28 4 5 16 3 0 12 1 0 177 0 3 427 chain 43396 chr5 180915260 + 40794260 40794843 L1PB1 5432 - 621 1207 64942 106 0 2 71 4 0 9 7 9 102 28 32 183 1 0 72 chain 32002 chr5 180915260 + 40794843 40795444 L1PB1 5432 + 4834 5387 80861 120 6 24 125 43 9 26 1 0 9 30 23 59 12 8 44 1 0 15 4 0 7 14 5 19 11 8 11 2 0 24 1 0 17 chain 25139 chr5 180915260 + 40800497 40800867 SVA_F 1814 + 654 1116 104078 10 0 3 54 1 2 9 4 43 13 27 59 8 1 0 32 0 1 4 0 1 44 1 0 9 0 16 119 0 1 34 chain 1716 chr5 180915260 + 40800588 40800615 SVA_F 1814 + 1109 1136 122656 27 chain 89911 chr5 180915260 + 40800925 40801891 SVA_E 1901 + 889 1899 39681 33 0 46 6 1 0 121 1 0 804 chain 21002 chr5 180915260 + 40807931 40808224 AluSc8 310 + 1 299 123907 43 8 2 86 11 14 59 0 8 86 chain 25395 chr5 180915260 + 40838424 40838717 AluSp 311 - 18 311 102707 293 chain 20072 chr5 180915260 + 40854706 40854938 AluSp 311 - 26 258 126910 232 chain 12338 chr5 180915260 + 40855487 40856472 THE1D 372 + 0 372 150868 21 0 2 33 18 11 89 783 175 41 chain 69828 chr5 180915260 + 40856573 40857329 L1PA2 6032 - 0 756 48463 756 chain 83962 chr5 180915260 + 40864488 40865541 MER11A 1151 + 0 1151 41917 55 0 99 140 4 0 32 0 2 115 0 1 93 1 2 20 1 0 126 6 5 115 2 1 56 3 0 24 0 6 193 1 0 66 chain 39297 chr5 180915260 + 40868031 40868549 MER41A 554 + 15 554 70335 24 0 1 275 1 0 4 1 2 25 0 4 47 12 28 129 chain 42705 chr5 180915260 + 40877587 40878133 LTR10F 562 - 0 562 65768 62 3 2 194 0 2 43 4 5 21 0 14 219 chain 32314 chr5 180915260 + 40880367 40880882 LTR8 732 - 163 701 80345 23 23 20 18 0 5 155 11 38 67 0 2 76 1 8 15 20 10 19 0 1 70 6 0 11 chain 126748 chr5 180915260 + 40881925 40883491 THE1A-int 1579 + 0 1579 28869 15 0 2 451 4 8 150 1 0 782 1 8 150 0 1 12 chain 24412 chr5 180915260 + 40891053 40891342 AluY 311 + 4 295 108017 125 1 2 46 0 1 117 chain 414317 chr5 180915260 + 40895485 40900551 L1PA6 6164 + 4 6162 9688 232 0 2 280 0 2 47 1 0 13 0 2 278 0 13 186 1 0 630 0 2 475 0 1 157 0 1 81 0 6 155 1 0 148 10 12 127 1 1202 90 6 0 94 137 5 369 9 8 866 0 2 422 1 2 72 1 0 176 chain 23802 chr5 180915260 + 40931860 40932148 AluSc 308 - 10 297 111464 167 1 0 120 chain 24211 chr5 180915260 + 40952604 40952867 L1PA5 6144 - 6 269 109149 263 chain 11551 chr5 180915260 + 40966229 40966458 L1PB1 5432 - 5 210 154096 5 2 0 21 1 0 10 1 0 44 11 9 6 1 0 5 2 0 30 16 3 14 1 0 44 2 1 13 chain 103774 chr5 180915260 + 40970706 40971963 L1PA8 5853 - 0 1271 35779 93 1 0 18 1 0 54 1 0 8 1 0 72 2 8 36 1 0 33 9 24 498 2 0 427 chain 49009 chr5 180915260 + 41006248 41007075 L1PB1 5432 + 4626 5422 59742 171 0 1 4 1 8 7 11 0 86 6 9 191 1 2 9 3 0 24 8 6 12 2 0 3 2 0 9 2 0 52 19 17 45 1 0 11 68 53 24 1 0 22 1 0 12 1 0 18 chain 20533 chr5 180915260 + 41014433 41014690 L1PA4 6152 + 5891 6143 125535 7 6 0 104 4 5 136 chain 533790 chr5 180915260 + 41022175 41028297 L1PA5 6144 + 3 6140 3729 638 7 13 417 0 1 453 0 9 405 1 0 1093 0 1 649 1 0 346 0 1 599 1 0 911 0 1 591 1 0 9 chain 10623 chr5 180915260 + 41030464 41030598 L1PB 1623 + 1279 1413 157717 134 chain 20840 chr5 180915260 + 41031184 41031574 THE1D 372 - 0 372 124487 120 63 64 106 45 26 56 chain 14304 chr5 180915260 + 41035953 41036185 L1PA16 3655 + 3104 3337 143552 74 1 2 24 1 0 43 19 22 21 2 0 47 chain 3247 chr5 180915260 + 41064931 41064965 tRNA-Gly-GGA 38 - 0 34 220076 34 chain 544239 chr5 180915260 + 41073379 41079530 L1PA4 6152 - 1 6152 2181 1368 0 1 609 0 1 1007 2 1 1217 2 1 930 1 0 582 0 1 433 chain 72911 chr5 180915260 + 41090528 41091372 L1PA7 6471 + 5628 6468 47063 685 0 1 147 5 0 7 chain 13321 chr5 180915260 + 41100701 41100918 THE1D 372 - 0 227 147006 14 20 19 131 7 19 15 1 0 29 chain 23235 chr5 180915260 + 41108869 41109146 L1PB2 3958 - 1480 1756 114521 270 1 0 6 chain 3216 chr5 180915260 + 41120020 41120055 tRNA-Cys-TGY 72 - 35 70 220648 35 chain 71347 chr5 180915260 + 41131261 41132139 L1PB1 5432 - 329 1207 47770 414 0 2 55 4 0 255 0 2 150 chain 156394 chr5 180915260 + 41135594 41137326 L1PA3long 6157 - 0 1736 23812 5 0 2 10 0 1 1073 0 1 644 chain 50549 chr5 180915260 + 41137326 41137898 L1PA3long 6157 + 3846 4419 58613 100 0 1 472 chain 14134 chr5 180915260 + 41139188 41139361 MER51B 395 - 156 329 144092 173 chain 12984 chr5 180915260 + 41144988 41145311 L1PA15 4387 - 31 313 148298 27 5 0 14 3 1 43 83 76 10 1 0 55 25 0 26 1 0 30 chain 515179 chr5 180915260 + 41205359 41211498 L1PA5 6144 + 2 6142 5649 133 10 24 255 5 6 137 0 1 77 0 1 533 9 0 766 1 0 817 0 3 73 0 5 982 15 16 486 24 28 18 0 1 972 20 1 34 7 6 141 0 1 462 6 6 44 1 0 111 chain 56735 chr5 180915260 + 41225179 41225823 L1PA4 6152 - 11 653 54697 242 3 1 399 chain 68876 chr5 180915260 + 41225823 41226584 L1PA4 6152 + 4759 5520 48863 761 chain 122555 chr5 180915260 + 41235179 41236507 L1PA2 6032 - 2 1330 30005 1328 chain 186873 chr5 180915260 + 41236507 41238533 L1PA2 6032 + 2694 4720 20343 2026 chain 21693 chr5 180915260 + 41242231 41242600 THE1D 372 + 0 360 121418 15 0 2 5 2 0 10 1 0 19 9 0 23 7 6 58 0 1 27 44 45 149 chain 22929 chr5 180915260 + 41256152 41256400 L1PA2 6032 - 263 511 115967 248 chain 12667 chr5 180915260 + 41256400 41256543 L1PA2 6032 + 5889 6032 149581 143 chain 43536 chr5 180915260 + 41298014 41298529 MER9a3 513 - 0 513 64759 68 2 0 445 chain 258522 chr5 180915260 + 41318114 41322316 L1MA1 4479 + 311 4142 15779 42 1 0 65 0 2 346 0 3 11 4 0 13 2 6 84 0 1 37 1 2 91 7 7 191 37 21 165 2 0 5 4 6 103 0 4 147 0 2 418 0 1 87 4 6 11 4 0 24 0 1 140 2 1 100 5 2 125 0 4 8 36 19 55 2 1 84 324 0 19 3 1 32 1 0 58 6 3 94 1 0 26 2 0 103 1 4 60 25 23 76 1 0 10 10 6 53 2 1 47 0 9 13 12 8 78 5 4 38 2 0 89 0 5 72 43 45 6 1 0 4 1 0 12 7 6 28 0 1 43 21 11 21 1 0 86 1 0 5 3 0 126 1 0 29 2 0 35 chain 263830 chr5 180915260 + 41330286 41333206 L1PA3long 6157 + 3232 6157 15494 387 0 1 733 0 4 1800 chain 3394 chr5 180915260 + 41336886 41336982 LTR16A 446 + 280 374 217214 34 44 42 18 chain 93959 chr5 180915260 + 41358430 41359848 L1PB1 5432 - 10 2981 38364 18 1 0 13 1 0 6 100 85 4 1 0 14 1 0 46 1 0 15 2 1 52 2 0 8 9 5 11 1 0 6 1 0 23 0 1587 235 0 1 5 1 0 18 0 1 62 3 1 67 0 1 106 0 1 342 12 4 184 0 2 47 chain 18558 chr5 180915260 + 41366056 41366289 L1PA5 6144 - 10 245 131336 136 5 6 4 1 0 72 0 2 15 chain 52981 chr5 180915260 + 41368115 41368924 L1PA10 4194 - 149 882 57027 198 130 55 222 1 0 258 chain 18580 chr5 180915260 + 41393419 41393739 L1MA1 4479 + 242 564 131287 37 2 0 73 0 1 33 6 5 51 50 54 68 chain 48159 chr5 180915260 + 41403505 41404016 L1HS 6032 - 0 511 60352 511 chain 14576 chr5 180915260 + 41414321 41414520 AluSp 311 - 12 228 142665 10 15 0 81 3 35 90 chain 11743 chr5 180915260 + 41464559 41464690 L1PA7 6471 + 6335 6466 153285 131 chain 35746 chr5 180915260 + 41474105 41474579 LTR3B_ 500 - 17 500 75204 77 6 8 53 0 3 42 0 1 58 10 13 66 0 1 85 1 0 76 chain 555110 chr5 180915260 + 41488021 41494189 L1PA3long 6157 - 0 6157 816 159 7 0 88 4 0 1517 4 0 878 0 1 666 0 1 1407 1 0 34 0 5 137 0 1 217 1 0 682 3 1 363 chain 19501 chr5 180915260 + 41527871 41528233 THE1B 368 + 0 368 128653 111 6 7 51 78 84 53 7 6 56 chain 17402 chr5 180915260 + 41529104 41529445 MER4B 649 + 0 409 134501 24 2 0 6 2 0 17 1 0 8 19 21 32 8 9 19 30 81 122 4 19 9 0 4 38 chain 277631 chr5 180915260 + 41534025 41537178 L1PA4 6152 - 0 3155 14767 139 4 5 706 0 4 2132 0 1 32 4 0 136 chain 5099 chr5 180915260 + 41542623 41542760 L1PA17 2846 + 2544 2680 194097 34 30 31 23 1 0 18 18 17 13 chain 24183 chr5 180915260 + 41546627 41546936 AluY 311 + 10 311 109307 114 0 1 1 7 0 163 2 0 22 chain 33659 chr5 180915260 + 41549804 41550185 L1PA4 6152 + 5762 6143 78155 381 chain 43642 chr5 180915260 + 41551849 41552635 L1PREC2 3366 + 2293 3042 64640 216 21 21 52 19 23 146 6 4 51 2 1 43 1 0 4 3 0 7 38 30 9 2 0 5 4 1 14 4 2 21 0 1 8 4 0 11 22 8 35 8 6 30 chain 3528 chr5 180915260 + 41558556 41558609 MADE1 96 - 27 96 214905 19 1 17 33 chain 42424 chr5 180915260 + 41563250 41563743 L1PA4 6152 + 5660 6152 66111 469 6 0 12 0 5 6 chain 541224 chr5 180915260 + 41564634 41570779 L1PA3long 6157 - 0 6148 2634 2229 4 5 740 0 1 5 0 1 581 7 0 387 0 2 4 0 1 672 0 2 241 0 1 237 0 1 1038 chain 37128 chr5 180915260 + 41594664 41595074 L1PA4 6152 - 1 410 73340 259 1 0 150 chain 62320 chr5 180915260 + 41599446 41600120 L1HS 6032 + 5362 6032 51747 659 4 0 11 chain 25655 chr5 180915260 + 41602295 41602594 AluY 311 + 0 306 101467 47 0 6 79 0 1 173 chain 412299 chr5 180915260 + 41604832 41609643 L1PA5 6144 - 0 4813 9738 140 9 9 546 2 5 86 1 0 262 0 1 374 0 1 134 4 0 814 0 1 259 3 4 338 1 0 855 3 2 118 0 2 102 3 4 588 5 4 164 chain 22719 chr5 180915260 + 41626783 41627076 AluY 311 + 1 292 116987 13 9 6 111 1 2 159 chain 78977 chr5 180915260 + 41634094 41635158 MER11C 1089 + 0 1063 44069 246 0 9 58 0 4 69 1 0 146 62 63 93 0 4 7 1 0 38 0 1 119 0 2 35 24 4 165 chain 2541 chr5 180915260 + 41659455 41659482 MLT2A1 477 + 28 55 224813 27 chain 3782 chr5 180915260 + 41659482 41659526 MLT2A1 477 - 433 477 210646 44 chain 458388 chr5 180915260 + 41659526 41665137 HERVL-int 5654 - 0 5629 8460 406 2 3 15 8 7 296 0 5 19 16 10 177 1 0 734 0 1 360 0 1 1058 0 1 56 0 3 610 7 8 758 8 10 241 0 5 36 0 1 127 1 2 112 0 1 4 1 0 274 0 1 168 0 1 11 1 2 24 0 1 80 chain 19056 chr5 180915260 + 41666817 41667061 AluY 311 + 21 260 129951 31 3 1 78 3 0 129 chain 26706 chr5 180915260 + 41667978 41668334 THE1B 368 + 0 368 97302 40 0 15 117 1 0 20 2 0 94 3 4 4 1 0 74 chain 9500 chr5 180915260 + 41689244 41689481 L1MA6 2487 - 216 362 163075 39 93 10 88 8 0 9 chain 33342 chr5 180915260 + 41689890 41690351 L1PB4 2604 - 249 707 78668 84 5 7 180 4 0 98 1 0 89 chain 107199 chr5 180915260 + 41704114 41705402 L1PA7 6471 - 5 1278 34915 30 0 1 596 24 0 215 0 2 88 0 1 299 0 5 36 chain 42862 chr5 180915260 + 41714528 41715061 L1PA7 6471 + 5934 6465 65581 5 1 0 369 25 24 133 chain 39168 chr5 180915260 + 41729570 41730032 L1PA5 6144 + 5683 6132 70512 366 18 5 78 chain 25362 chr5 180915260 + 41733346 41733639 AluSp 311 - 10 302 102874 169 1 0 123 chain 199586 chr5 180915260 + 41742585 41744849 L1PA5 6144 - 0 2283 19239 112 1 0 117 0 4 1456 0 12 102 0 4 476 chain 134705 chr5 180915260 + 41744849 41746395 L1PA5 6144 + 2304 3873 27076 165 0 14 50 4 12 94 0 1 116 7 6 388 0 2 573 1 0 148 chain 21294 chr5 180915260 + 41782135 41782824 L1PA11 4918 - 340 711 122885 11 2 0 13 1 0 15 13 9 10 8 3 15 0 3 5 19 8 11 2 0 61 310 15 67 1 0 125 chain 43017 chr5 180915260 + 41814502 41814982 L1PA3long 6157 + 5670 6152 65401 12 0 2 468 chain 78586 chr5 180915260 + 41846236 41847098 L1PA3long 6157 - 1 869 44123 771 0 2 75 0 4 16 chain 188168 chr5 180915260 + 41847098 41849168 L1PA3long 6157 + 3210 5278 20220 713 4 5 505 2 0 208 1 0 637 chain 4832 chr5 180915260 + 41874531 41874588 MLT1A0 366 - 61 118 197002 57 chain 28869 chr5 180915260 + 41901355 41901664 AluYa5 310 - 2 310 89589 182 1 0 126 chain 73130 chr5 180915260 + 41945514 41946376 MER11D 897 + 0 897 46957 38 0 1 279 1 6 90 5 11 162 0 23 287 chain 4100 chr5 180915260 + 41948161 41948235 MER3 215 + 115 198 205938 37 13 22 24 chain 197697 chr5 180915260 + 41948949 41951326 L1PA7 6471 + 4092 6469 19379 38 0 1 4 2 1 359 7 8 44 5 0 127 0 4 890 0 1 41 5 4 86 0 2 353 0 1 403 3 0 10 chain 84204 chr5 180915260 + 41953108 41954028 L1PA3long 6157 - 8 928 41819 920 chain 82716 chr5 180915260 + 41964736 41965659 L1PA4 6152 - 751 1674 42451 923 chain 63750 chr5 180915260 + 41965659 41966400 L1PA4 6152 + 5381 6143 51084 231 0 18 153 0 2 225 0 1 132 chain 60481 chr5 180915260 + 41981867 41982547 L1PA5 6144 - 15 694 52589 98 1 0 581 chain 39408 chr5 180915260 + 41982830 41983321 L1PA7 6471 - 10 500 70152 152 7 6 332 chain 32299 chr5 180915260 + 41993682 41994152 MLT2A1 477 - 2 477 80368 60 29 30 4 1 0 174 9 10 23 1 5 169 chain 420154 chr5 180915260 + 41994152 41999448 HERVL-int 5654 - 0 5653 9529 220 1 0 105 1 0 13 9 10 147 0 1 60 11 37 150 0 3 103 3 6 878 0 3 712 0 1 193 1 0 65 11 0 38 0 2 549 1 2 364 0 1 4 1 0 102 2 1 630 0 1 222 0 1 26 0 300 54 1 2 26 0 91 257 66 3 270 chain 27359 chr5 180915260 + 41999449 42000000 MLT2A1 477 - 0 419 95081 39 2 0 23 185 52 40 1 0 149 2 6 110 chain 7424 chr5 180915260 + 42002151 42002268 L1MA9 1812 - 1465 1578 174620 56 5 0 7 3 4 46 chain 21447 chr5 180915260 + 42003639 42003894 L1PA5 6144 - 16 274 122343 131 0 1 119 0 2 5 chain 28592 chr5 180915260 + 42003894 42004226 L1PA5 6144 + 5551 5883 90777 332 chain 17273 chr5 180915260 + 42010980 42011189 L1PA7 6471 - 3 210 134856 9 2 0 198 chain 153533 chr5 180915260 + 42030020 42031721 L1PA4 6152 + 4451 6151 24151 1441 1 0 259 chain 147399 chr5 180915260 + 42033492 42035526 L1PA8 5853 - 0 2099 24979 92 2 1 19 3 2 50 16 14 17 0 8 7 9 15 20 2 0 44 1 0 43 0 1 84 0 2 26 0 17 145 4 0 58 1 2 174 0 2 5 3 0 590 2 1 50 0 2 22 1 0 103 4 14 38 2 0 5 0 36 212 17 15 163 chain 536481 chr5 180915260 + 42078395 42084407 L1PA3long 6157 + 10 6157 3377 143 0 1 157 1 0 465 0 128 145 0 2 2834 0 6 2013 1 0 253 chain 51093 chr5 180915260 + 42099853 42100479 LTR14B 630 + 0 630 58258 18 0 1 4 1 0 456 0 1 60 1 4 86 chain 48405 chr5 180915260 + 42111234 42111945 LTR12D 1347 + 403 1347 60179 36 0 150 109 18 11 194 15 10 109 4 0 10 26 23 20 0 102 170 chain 362350 chr5 180915260 + 42111999 42116354 HERV9-int 5642 + 0 4812 11311 127 0 1 660 1 3 310 21 19 190 0 1 114 1 0 735 0 456 414 1 0 98 6 7 1070 0 4 243 16 11 252 0 1 96 chain 54028 chr5 180915260 + 42117341 42118001 LTR12_ 688 + 7 665 56343 508 2 0 150 chain 21752 chr5 180915260 + 42125940 42126331 THE1B 368 + 0 368 121199 44 63 39 24 13 14 46 8 7 133 1 3 4 1 0 54 chain 68050 chr5 180915260 + 42165984 42166712 L1HS 6032 - 11 739 49224 728 chain 99682 chr5 180915260 + 42166713 42167776 L1HS 6032 + 4246 5309 36859 1063 chain 80503 chr5 180915260 + 42172206 42173106 L1PA4 6152 - 1 900 43389 773 1 0 126 chain 20464 chr5 180915260 + 42173111 42173336 L1PA4 6152 + 4994 5219 125718 225 chain 3418 chr5 180915260 + 42178198 42178238 THE1C-int 1605 - 1449 1489 216802 40 chain 34530 chr5 180915260 + 42180042 42180490 L1PA8 5853 + 5409 5853 76863 151 1 0 39 0 1 8 2 0 72 1 0 60 2 1 19 1 0 10 0 1 82 chain 5053 chr5 180915260 + 42180700 42180779 MADE1 96 + 1 96 194604 32 1 17 29 0 1 4 1 0 12 chain 20257 chr5 180915260 + 42202881 42203136 L1PA6 6164 - 14 270 126354 132 2 3 121 chain 57530 chr5 180915260 + 42209009 42209660 L1PA4 6152 - 47 692 54219 24 7 0 532 0 1 88 chain 62209 chr5 180915260 + 42209660 42210356 L1PA4 6152 + 4705 5402 51798 671 1 2 24 chain 80007 chr5 180915260 + 42210379 42211652 L1MA1 4479 - 899 2146 43590 64 3 0 115 21 19 119 6 1 4 1 0 7 1 0 60 17 13 22 3 1 171 2 1 12 11 10 95 1 0 8 0 1 53 1 0 32 2 0 104 3 2 60 0 2 33 1 0 42 20 14 4 0 1 108 36 38 31 chain 542483 chr5 180915260 + 42254341 42260491 L1PA4 6152 - 1 6150 2435 440 0 1 415 0 1 291 1 0 690 0 1 622 0 3 1374 0 2 595 1 0 1140 1 0 116 6 0 458 chain 208717 chr5 180915260 + 42263950 42266491 L1PA7 6471 - 5 2603 18588 7 2 0 145 9 16 483 0 1 104 2 0 5 1 5 76 0 3 446 0 1 69 11 12 417 0 2 163 0 1 194 0 40 375 0 1 32 chain 30043 chr5 180915260 + 42266491 42266915 L1PA7 6471 + 3466 3882 84433 68 9 10 56 5 6 221 11 0 9 1 2 44 chain 22105 chr5 180915260 + 42286891 42287268 THE1D 372 + 11 372 119762 58 26 7 31 1 2 4 1 0 53 33 34 33 5 7 132 chain 30725 chr5 180915260 + 42288596 42289031 LTR7 482 - 5 482 82993 44 13 14 123 0 31 37 6 17 96 15 14 101 chain 38772 chr5 180915260 + 42298114 42298560 L1PA5 6144 + 5692 6139 71049 12 0 1 434 chain 6883 chr5 180915260 + 42299859 42299941 MLT1B 390 + 289 371 178327 82 chain 32067 chr5 180915260 + 42324694 42325096 THE1B-int 1605 - 1186 1589 80740 112 0 1 290 chain 5856 chr5 180915260 + 42334110 42334175 THE1C-int 1605 + 1533 1598 186634 65 chain 22670 chr5 180915260 + 42334182 42334527 THE1C 375 + 0 345 117216 107 17 18 54 0 2 5 0 1 7 27 23 128 chain 109252 chr5 180915260 + 42347380 42348970 THE1B-int 1605 + 0 1590 34384 21 0 1 31 0 1 58 52 0 177 5 7 121 1 0 5 7 32 135 1 2 258 17 36 28 7 11 15 16 31 137 16 0 82 1 0 5 25 26 224 0 1 145 chain 501868 chr5 180915260 + 42353291 42359761 L1PA6 6164 + 0 6160 6732 192 1 21 232 23 4 118 1 0 115 0 1 104 0 17 1150 1 0 371 0 2 16 5 6 467 1 0 308 0 1 64 2 3 440 0 1 64 5 0 383 324 0 1059 0 1 17 5 0 672 0 4 321 3 0 6 chain 119403 chr5 180915260 + 42371802 42373305 L1PA8 5853 + 4141 5671 31266 103 2 6 466 0 7 225 0 4 6 7 14 32 5 7 72 2 5 8 0 3 97 9 10 351 6 5 46 2 0 18 1 0 45 chain 50531 chr5 180915260 + 42392057 42392630 L1PA4 6152 - 0 579 58632 6 0 5 340 0 1 227 chain 514155 chr5 180915260 + 42412419 42418657 L1PA6 6164 - 3 6162 5762 144 1 0 5 1 2 127 0 3 656 1 0 12 5 4 1976 0 1 12 1 0 29 5 6 858 0 1 495 0 1 20 100 0 819 0 1 165 0 17 296 1 0 311 1 0 4 1 2 192 chain 99208 chr5 180915260 + 42427673 42429151 THE1B-int 1605 - 11 1605 36970 261 0 5 29 3 0 51 0 82 10 0 1 12 0 4 16 45 47 330 35 51 230 2 65 125 7 6 154 1 4 15 57 0 73 1 2 21 chain 37699 chr5 180915260 + 42448163 42448671 L1PB1 5432 - 422 909 72554 382 3 0 46 18 0 59 chain 69347 chr5 180915260 + 42458320 42459486 L1PA15 4387 + 3259 4366 48661 193 5 6 34 0 1 72 1 0 60 23 9 77 0 1 19 0 4 68 11 9 78 2 0 43 4 3 39 0 2 26 0 1 4 1 0 33 22 0 63 2 1 15 27 26 39 1 0 27 73 58 44 3 1 11 8 3 28 1 0 9 chain 547023 chr5 180915260 + 42476986 42483132 L1PA4 6152 - 1 6152 1827 338 0 1 174 1 0 2461 1 0 1772 0 5 357 0 2 465 1 0 576 chain 3997 chr5 180915260 + 42497757 42497805 MER58A 224 + 168 216 207435 48 chain 22555 chr5 180915260 + 42513607 42513895 AluSp 311 + 0 293 117783 70 9 14 209 chain 122066 chr5 180915260 + 42524171 42525736 THE1A-int 1579 + 0 1573 30363 171 8 7 127 0 6 22 3 5 62 3 0 218 1 2 550 8 9 136 11 5 52 0 8 193 chain 26773 chr5 180915260 + 42525742 42526096 THE1A 353 + 0 353 97071 110 1 0 92 1 0 48 15 16 87 chain 48184 chr5 180915260 + 42527232 42527947 L1PREC2 3366 + 136 858 60335 34 0 1 4 2 0 5 4 5 15 21 15 18 2 1 11 1 0 11 4 2 33 3 2 42 0 14 50 1 0 36 0 1 34 2 1 84 3 4 93 0 4 202 chain 385819 chr5 180915260 + 42533811 42539657 L1PB1 5432 - 8 5355 10580 4 1 0 16 1 0 8 0 11 15 1 0 24 2 0 14 14 11 10 9 0 15 3 0 15 1 0 44 1 0 16 2 1 50 16 16 7 1 0 12 1 0 21 1 0 11 497 3 80 2 6 34 0 1 164 15 11 58 0 1 79 0 11 23 4 0 10 10 6 70 1 0 67 0 4 23 1 0 147 1 0 79 0 1 58 0 1 150 2 1 194 0 1 92 5 0 885 18 20 329 5 7 48 6 0 8 0 6 41 43 44 211 0 1 82 1 0 95 5 6 75 0 1 404 0 1 67 15 0 16 13 14 30 0 2 133 4 5 14 0 1 4 1 0 310 1 0 105 0 2 158 1 2 12 0 45 11 51 0 83 2 1 109 0 2 58 0 13 190 chain 27111 chr5 180915260 + 42563434 42563752 AluYb8 318 + 0 314 95899 63 2 0 69 2 0 182 chain 16099 chr5 180915260 + 42607125 42607371 THE1D 372 + 118 360 138065 38 2 0 46 23 22 117 1 0 19 chain 53991 chr5 180915260 + 42625529 42626187 MER4E 760 - 5 742 56372 327 0 79 174 0 1 84 1 0 72 chain 548435 chr5 180915260 + 42659733 42665858 L1PA3long 6157 + 12 6157 1650 1156 0 3 289 0 4 1813 1 12 159 0 1 915 0 2 1099 3 0 232 0 1 125 0 1 333 chain 11857 chr5 180915260 + 42670805 42670943 L1PA3long 6157 + 6015 6153 152805 138 chain 8667 chr5 180915260 + 42677763 42677927 MER30 238 + 47 234 167384 60 9 34 24 28 26 43 chain 7751 chr5 180915260 + 42680956 42681053 L1PA6 6164 - 2 101 172598 18 0 2 79 chain 80808 chr5 180915260 + 42681053 42682293 L1PA6 6164 + 4994 5927 43264 321 5 9 368 311 0 235 chain 119587 chr5 180915260 + 42685063 42686465 L1PA7 6471 - 17 1426 31184 347 2 0 6 0 2 483 0 2 556 0 5 8 chain 86715 chr5 180915260 + 42686465 42687513 L1PA7 6471 + 3993 5050 40796 208 0 1 459 7 11 161 1 6 110 1 0 101 chain 555859 chr5 180915260 + 42734816 42740849 L1PA2 6032 + 0 6029 740 370 15 4 665 0 3 2329 0 4 443 0 1 364 1 0 1846 chain 128694 chr5 180915260 + 42743090 42744528 L1PA5 6144 + 4697 6143 28388 1035 0 8 403 chain 35303 chr5 180915260 + 42749741 42750175 L1PA7 6471 - 3 439 75792 11 0 2 89 1 2 49 1 0 283 chain 4211 chr5 180915260 + 42764066 42764191 L1MC2 1988 - 0 119 204407 31 2 0 5 57 53 30 chain 124906 chr5 180915260 + 42764437 42766209 L1MA1 4479 + 2464 4190 29423 54 6 0 133 0 3 14 1 0 103 2 0 32 2 1 62 1 0 9 2 3 80 1 0 27 2 0 173 2 0 99 1 0 6 5 0 56 1 2 68 3 0 130 7 5 55 5 6 130 1 0 24 2 0 16 1 0 23 0 2 46 1 0 8 8 6 19 1 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 8 10 6 16 7 0 18 chain 50033 chr5 180915260 + 42795809 42796353 L1PA3long 6157 + 5614 6157 58996 393 1 0 150 chain 53718 chr5 180915260 + 42815132 42815882 Harlequin-int 5206 + 135 887 56532 14 3 0 65 13 12 54 7 10 66 12 17 53 3 2 21 1 3 33 3 0 402 chain 74191 chr5 180915260 + 42834372 42835246 MER11D 897 - 0 897 46416 287 1 24 586 chain 4321 chr5 180915260 + 42837122 42837171 LTR12C 1709 + 1159 1208 202961 49 chain 16838 chr5 180915260 + 42841859 42842046 L1PA4 6152 - 0 188 136020 155 0 1 32 chain 144747 chr5 180915260 + 42844417 42846060 L1PA4 6152 - 0 1648 25362 11 1 4 86 0 2 1545 chain 42561 chr5 180915260 + 42852891 42853473 PRIMA4_LTR 623 + 0 623 65948 134 5 6 117 7 8 57 0 19 43 6 0 24 0 4 30 1 2 50 0 23 14 2 0 92 chain 269969 chr5 180915260 + 42859279 42863056 L1PB1 5432 - 20 3781 15181 8 1 0 13 1 0 21 1 0 24 18 20 18 16 6 6 2 0 15 1 0 44 1 0 13 9 8 48 2 0 9 7 3 12 0 3 5 5 0 21 5 0 10 0 3 104 5 6 16 1 2 348 3 0 112 15 6 61 1 2 278 0 1 137 1 0 67 1 0 8 0 2 163 0 1 53 0 7 144 0 1 4 7 8 334 9 8 46 8 9 197 6 5 435 0 1 42 3 0 204 0 1 33 1 2 9 6 5 100 1 2 72 0 12 123 8 6 164 1 0 110 chain 493443 chr5 180915260 + 42863064 42869056 L1PA6 6164 + 0 6162 7203 103 12 134 236 42 41 43 0 1 232 0 3 139 1 26 107 0 1 7 1 0 341 25 25 7 0 2 5 2 0 88 1 10 452 0 10 199 0 2 111 0 1 72 9 0 561 0 2 228 0 1 12 1 0 708 0 2 446 0 4 135 2 0 152 1 0 424 0 2 1087 chain 20917 chr5 180915260 + 42902430 42902690 AluSp 311 + 1 265 124222 102 5 9 153 chain 4166 chr5 180915260 + 42931295 42931768 MER11D 897 + 0 474 51771 357 0 1 116 chain 535778 chr5 180915260 + 42931782 42937968 L1PA4 6152 + 0 6143 3481 265 50 0 803 0 1 457 0 1 2409 9 13 1377 5 6 811 chain 3452 chr5 180915260 + 42937973 42938365 MER11D 897 + 474 891 51771 100 0 23 83 0 1 87 0 1 122 chain 73990 chr5 180915260 + 42955392 42956448 MER11C 1089 - 26 1089 46517 325 0 1 38 1 0 7 0 4 122 19 20 116 11 8 105 0 4 63 0 1 75 91 0 20 4 95 59 chain 10809 chr5 180915260 + 42967853 42967974 L1PA4 6152 + 5180 5301 156945 121 chain 73884 chr5 180915260 + 42967974 42968810 L1PA4 6152 + 5306 6143 46568 793 0 1 43 chain 44770 chr5 180915260 + 42978777 42979908 SVA_B 1603 + 0 1176 29202 21 32 32 579 1 2 199 23 24 33 0 1 41 0 1 14 14 54 4 0 1 170 chain 141990 chr5 180915260 + 42979918 42981491 SVA_D 2077 + 0 2076 25825 17 5 23 838 0 437 38 0 49 40 1 0 634 chain 16625 chr5 180915260 + 42981531 42981951 SVA_B 1603 + 1176 1602 29202 407 0 6 13 chain 26443 chr5 180915260 + 42981990 42982275 SVA_B 1603 + 1171 1456 98259 285 chain 12154 chr5 180915260 + 42982287 42982425 SVA_B 1603 + 1465 1603 151595 138 chain 6462 chr5 180915260 + 43025974 43026053 MER4-int 2692 + 775 854 181546 79 chain 28730 chr5 180915260 + 43033110 43033417 AluYk11 308 - 1 308 90209 307 chain 43577 chr5 180915260 + 43049352 43049913 LTR61 567 + 0 567 64709 11 1 0 15 0 1 26 2 13 129 2 0 29 6 0 168 0 3 172 chain 478147 chr5 180915260 + 43053755 43060683 L1PA6 6164 + 4 6161 7795 84 0 511 378 0 1 93 1 2 361 0 6 5 1 0 283 2 1 20 0 2 108 0 5 141 0 8 28 0 1 283 0 2 61 9 0 307 2 0 495 0 1 12 2 1 1154 0 4 219 315 0 112 982 0 342 1 0 1109 1 0 17 chain 18118 chr5 180915260 + 43069941 43070163 AluY 311 + 84 303 132548 48 0 1 88 4 0 82 chain 142784 chr5 180915260 + 43072808 43074906 HERVH48-int 3304 - 1103 3108 25687 7 1 0 59 0 2 474 2 1 89 1 0 142 0 1 77 1 0 6 1 0 11 2 1 107 20 18 6 1 0 5 2 0 16 1 0 25 2 0 22 1 0 21 2 0 20 2 0 3 3 0 32 2 0 15 1 0 20 1 0 10 4 1 117 28 20 21 26 27 19 1 0 39 1 0 33 2 0 66 3 1 4 1 0 16 4 0 15 15 6 54 1 4 9 4 2 7 1 0 78 15 9 9 6 0 13 1 0 72 13 8 65 1 0 4 11 6 9 1 0 8 2 1 11 13 0 36 1 0 25 chain 31931 chr5 180915260 + 43075366 43075775 MER48 407 - 0 407 80965 64 3 0 144 5 6 193 chain 26054 chr5 180915260 + 43078569 43078870 AluYf4 310 + 0 300 99813 154 0 1 85 2 0 60 chain 36883 chr5 180915260 + 43081436 43081950 PRIMA4_LTR 623 - 0 623 73679 68 7 9 80 20 99 4 0 1 47 0 2 15 1 0 30 6 9 61 0 23 175 chain 5952 chr5 180915260 + 43083380 43083462 LTR49-int 1717 - 165 279 185665 9 0 33 60 1 0 12 chain 10591 chr5 180915260 + 43085841 43086269 LTR49-int 1717 - 1378 1691 157867 64 6 10 73 256 139 5 1 0 8 1 0 14 chain 167772 chr5 180915260 + 43086628 43089210 SVA_E 1901 - 0 1901 22307 796 52 10 124 587 13 35 102 0 75 0 1 4 1 0 26 1 0 118 0 40 514 2 0 145 chain 4029 chr5 180915260 + 43087424 43087476 SVA_E 1901 - 934 978 146699 7 4 0 33 4 0 4 chain 34780 chr5 180915260 + 43087613 43088036 SVA_F 1814 - 595 1160 76506 4 0 1 76 0 1 175 0 15 10 0 1 49 0 1 31 0 79 14 0 41 57 0 3 7 chain 9354 chr5 180915260 + 43088036 43088174 SVA_F 1814 - 797 921 82197 55 46 33 4 1 0 32 chain 4168 chr5 180915260 + 43088091 43088137 SVA_F 1814 - 549 595 168210 46 chain 6005 chr5 180915260 + 43088251 43088323 SVA_E 1901 - 734 806 140103 72 chain 4787 chr5 180915260 + 43092801 43092967 LTR49 580 - 31 199 197489 38 88 91 21 1 0 18 chain 6952 chr5 180915260 + 43094315 43094402 LTR64 526 + 2 91 177796 14 0 1 30 0 1 43 chain 61616 chr5 180915260 + 43112464 43113262 LTR12 884 - 0 884 52071 84 1 0 88 2 1 293 1 2 16 0 22 42 0 66 244 1 0 26 chain 10207 chr5 180915260 + 43133795 43133924 MER85 139 - 0 139 159588 34 0 10 95 chain 23735 chr5 180915260 + 43142160 43142441 AluSg7 307 + 0 278 111861 4 1 0 128 2 0 146 chain 30664 chr5 180915260 + 43188696 43189063 L1PA5 6144 + 5776 6144 83098 354 2 3 11 chain 23068 chr5 180915260 + 43201245 43201523 AluY 311 + 16 295 115308 116 0 1 162 chain 7059 chr5 180915260 + 43217673 43217803 L1MB8 1703 - 621 757 177039 39 36 42 55 chain 20709 chr5 180915260 + 43218974 43219297 THE1C 375 + 0 327 124934 76 14 15 16 7 8 6 0 1 161 17 18 26 chain 4391 chr5 180915260 + 43219642 43219697 MSTB 430 - 375 430 202059 55 chain 102057 chr5 180915260 + 43259127 43260683 L1PB3 3668 - 102 2120 36249 37 3 1 24 2 1 8 1 0 13 22 8 82 3 4 9 0 1 45 0 1 30 37 8 278 36 28 232 0 2 48 7 8 28 0 3 118 22 571 309 5 3 29 8 0 4 32 0 40 0 1 44 chain 517154 chr5 180915260 + 43260715 43266850 L1PA5 6144 - 1 6144 5466 688 8 11 150 1 0 402 0 1 561 4 6 466 9 6 159 1 2 134 1 2 359 4 1 25 9 1 973 0 2 136 1 0 100 0 1 35 1 2 249 0 2 500 9 0 299 0 1 150 4 8 577 1 15 119 chain 2952 chr5 180915260 + 43269067 43269102 L1PB3 3668 - 3557 3592 226042 35 chain 25907 chr5 180915260 + 43292086 43292392 AluSc5 308 - 2 308 100395 306 chain 31062 chr5 180915260 + 43315312 43315801 LTR10F 562 - 0 562 82411 177 1 0 4 1 2 80 0 14 20 1 104 14 11 12 28 47 2 105 chain 159997 chr5 180915260 + 43318062 43320924 HERVIP10F-int 4088 - 804 3548 23341 7 1 0 15 25 21 17 8 4 18 1 0 7 90 76 16 4 0 10 46 27 60 24 21 514 9 8 65 17 18 56 2 1 16 1 0 73 1 0 45 0 1 5 10 9 24 1 0 65 1 0 12 9 8 329 1 8 64 25 21 28 5 4 62 1 0 19 7 5 54 0 2 7 1 0 12 16 12 5 1 0 24 7 5 12 1 0 14 39 38 32 0 1 94 7 6 39 1 0 15 1 0 22 1 0 7 3 1 20 15 11 5 1 0 13 1 0 8 1 0 11 2 0 41 1 0 30 1 0 7 4 1 5 1 0 20 1 0 4 51 39 11 1 0 16 0 1 9 1 0 6 1 0 58 1 0 8 13 12 18 1 0 4 1 0 4 1 0 45 1 0 8 2 0 27 2 1 7 1 0 12 7 6 14 1 0 13 1 0 10 26 22 28 1 0 28 chain 30496 chr5 180915260 + 43320924 43321392 LTR7C 471 - 0 471 83438 25 2 0 5 0 2 29 5 4 77 0 1 4 4 3 111 0 4 7 14 10 23 6 9 48 20 21 88 chain 25787 chr5 180915260 + 43321537 43321820 L1PA4 6152 + 5868 6151 100920 283 chain 518118 chr5 180915260 + 43323005 43329112 L1PA6 6164 - 8 6164 5368 834 3 7 949 0 4 839 1 0 333 0 1 755 0 20 88 0 1 128 6 5 46 0 3 193 0 2 865 4 5 274 0 17 277 2 1 442 5 4 63 chain 16335 chr5 180915260 + 43329584 43329771 HERVH-int 3825 - 0 188 137383 181 0 1 6 chain 31955 chr5 180915260 + 43333092 43333557 LTR7C 471 - 0 471 80931 25 2 0 5 0 2 31 0 1 28 1 0 4 5 6 15 13 14 174 0 3 64 8 9 90 chain 34036 chr5 180915260 + 43336226 43336745 LTR10F 562 - 0 562 77570 126 10 11 154 28 76 23 0 11 26 18 1 134 chain 410616 chr5 180915260 + 43340871 43346088 L1PA2 6032 + 1 6032 9785 101 1 2 4 1 0 46 14 13 84 7 6 317 0 1 132 5 12 48 139 11 168 12 15 761 5 0 1408 4 8 333 0 459 50 0 1 595 1 0 368 1 2 251 1 2 278 0 472 68 0 1 14 chain 88138 chr5 180915260 + 43346089 43347079 L1PA4 6152 + 5153 6143 40323 990 chain 33656 chr5 180915260 + 43359237 43359741 MER9a3 513 - 2 513 78160 53 7 8 14 11 15 138 18 0 8 0 17 147 10 11 80 0 2 18 chain 45589 chr5 180915260 + 43361740 43362534 L1PREC2 3366 - 323 1079 62420 33 3 1 38 22 8 13 3 0 28 27 17 17 107 89 19 0 1 27 2 0 160 0 1 79 0 7 134 0 2 82 chain 5172 chr5 180915260 + 43364215 43364280 MER41B 635 - 87 153 193336 36 0 1 29 chain 208816 chr5 180915260 + 43364738 43367763 L1P3 4156 - 1270 4125 18577 255 5 4 104 308 0 195 20 14 56 1 0 8 0 216 348 6 2 395 0 1 165 0 21 308 3 2 32 0 1 80 33 5 15 75 17 133 0 1 107 1 0 81 2 1 67 12 11 210 chain 6419 chr5 180915260 + 43376178 43376259 MLT1E3 631 - 464 545 181873 81 chain 29438 chr5 180915260 + 43377823 43378133 AluYa5 310 - 0 310 86904 310 chain 39867 chr5 180915260 + 43395720 43396587 MER41A 554 - 1 554 69509 141 0 4 78 332 0 184 1 0 24 0 3 20 0 14 49 2 1 5 1 0 30 chain 522589 chr5 180915260 + 43402650 43408749 L1PA5 6144 + 3 6142 4906 118 0 14 1241 1 2 259 0 1 580 2 0 95 3 5 208 0 3 183 0 9 71 0 1 1302 1 2 57 0 4 122 0 2 409 1 0 530 2 1 71 1 5 74 0 1 240 0 1 528 chain 4505 chr5 180915260 + 43414653 43414707 MER21A 919 + 551 605 200727 54 chain 93083 chr5 180915260 + 43414707 43415786 MER11C 1089 + 0 1079 38636 35 4 0 190 0 5 333 6 5 511 chain 385611 chr5 180915260 + 43438937 43443493 L1PA5 6144 - 0 4521 10588 46 37 5 96 0 1 185 0 1 16 0 1 289 0 1 126 1 0 36 0 1 124 1 0 536 1 0 37 2 0 195 1 0 103 0 4 11 4 6 700 0 5 94 0 10 258 0 4 95 1 0 398 0 1 339 0 3 53 0 1 110 0 4 314 39 4 308 chain 36576 chr5 180915260 + 43451362 43451868 L1PB4 2604 + 1738 2255 74128 80 25 33 106 18 20 75 0 1 202 chain 4329 chr5 180915260 + 43457253 43457433 L1MC2 1988 + 1811 1978 202841 30 4 1 5 1 0 16 97 88 27 chain 27519 chr5 180915260 + 43459891 43460355 MER1A 529 - 0 470 94604 63 6 9 228 1 3 24 81 82 61 chain 277132 chr5 180915260 + 43462929 43466066 L1PA4 6152 + 3026 6151 14801 752 21 6 1724 6 0 177 0 6 176 1 4 280 chain 166074 chr5 180915260 + 43467273 43472236 L1MA1 4479 + 986 4190 22509 260 10 4 9 0 6 32 3 10 218 1000 0 100 0 1 19 0 10 256 5 7 36 1 4 32 0 4 88 0 2 57 3 447 5 0 2 72 2 1 103 2 0 33 1 0 67 2 0 13 0 1 57 1418 230 6 4 0 73 1 0 12 5 0 126 3 0 124 5 0 202 22 20 4 1 0 16 1 0 71 1 0 18 3 1 14 1 0 30 4 5 53 9 5 89 0 3 25 113 99 4 1 0 18 chain 45943 chr5 180915260 + 43468071 43468635 LTR6B 557 - 0 557 62090 22 0 1 33 0 1 6 0 1 98 9 0 40 0 1 304 2 0 50 chain 12953 chr5 180915260 + 43468635 43468804 MER4A1 472 + 301 472 148418 92 10 12 67 chain 6101 chr5 180915260 + 43470978 43471066 L1MA1 4479 + 1994 2082 184395 66 0 4 7 0 1 2 5 0 8 chain 8326 chr5 180915260 + 43471066 43471166 L1MA1 4479 + 2084 2184 169243 100 chain 158138 chr5 180915260 + 43473336 43475636 L1PA7 6471 + 4428 6467 23571 9 0 9 343 4 0 196 12 8 384 0 5 28 10 11 127 1 0 43 3 8 21 2 1 62 309 27 44 0 11 289 1 6 144 0 3 67 13 0 13 17 24 148 2 0 8 chain 139916 chr5 180915260 + 43510530 43512148 SVA_C 1631 + 21 1631 26153 829 61 22 6 0 1 16 0 30 78 0 1 606 1 0 21 chain 2720 chr5 180915260 + 43511359 43511389 SVA_C 1631 + 810 840 156320 30 chain 10826 chr5 180915260 + 43516021 43516174 Tigger1 2417 + 111 264 156889 35 4 6 62 2 0 50 chain 142896 chr5 180915260 + 43521580 43523181 SVA_D 2077 + 3 2073 25665 6 1 0 10 1 0 4 0 5 14 0 6 494 0 40 321 0 185 88 0 225 328 0 10 334 chain 26625 chr5 180915260 + 43549402 43549746 THE1A 353 + 0 341 97573 84 2 1 17 1 0 100 1 0 139 chain 26660 chr5 180915260 + 43565950 43566322 THE1C 375 + 0 375 97454 129 6 10 41 0 1 6 1 0 147 2 1 4 0 1 9 1 0 26 chain 136848 chr5 180915260 + 43577741 43579259 SVA_D 2077 - 16 2067 26671 322 0 10 323 1 490 108 0 1 727 1 4 9 0 29 4 0 1 23 chain 75719 chr5 180915260 + 43580549 43581491 LTR5_Hs 974 + 0 974 45643 279 0 28 512 8 15 19 20 17 104 chain 4814 chr5 180915260 + 43582546 43582604 LTR49 580 + 514 572 197182 58 chain 30599 chr5 180915260 + 43598890 43599316 MER57A1 433 + 0 433 83200 86 6 10 17 5 4 163 3 4 137 0 3 9 chain 30467 chr5 180915260 + 43605336 43605653 AluYb8 318 + 0 317 83497 317 chain 6607 chr5 180915260 + 43610324 43610402 LTR12D 1347 - 438 516 180408 78 chain 28948 chr5 180915260 + 43614957 43615261 AluYb8 318 + 0 304 89230 304 chain 69062 chr5 180915260 + 43629124 43630319 L1PB1 5432 - 6 1197 48780 4 1 0 18 1 0 7 8 7 20 1 0 24 2 0 14 11 8 16 26 12 16 4 25 19 21 30 34 20 14 14 3 2 8 2 1 19 59 53 45 20 21 71 0 1 295 3 0 88 3 5 20 4 7 188 2 1 84 chain 19867 chr5 180915260 + 43655445 43655766 Tigger4b 360 + 0 360 127603 13 3 11 5 1 0 72 15 38 59 3 12 85 0 1 7 5 4 53 chain 51475 chr5 180915260 + 43661519 43662083 L1PA2 6032 - 8 571 57989 505 1 0 58 chain 117260 chr5 180915260 + 43665344 43666731 SVA_B 1603 - 9 1596 32036 422 0 4 116 0 3 36 0 82 54 0 40 20 0 77 689 35 29 15 chain 539529 chr5 180915260 + 43667377 43673524 L1PA5 6144 - 2 6141 2897 102 0 4 402 1 0 363 4 0 101 7 0 99 0 1 2421 2 1 1409 1 0 25 0 1 135 2 1 266 0 1 484 0 3 40 3 0 280 chain 71615 chr5 180915260 + 43694190 43695193 L1PREC2 3366 - 942 1927 47649 209 16 17 20 1 0 404 51 27 50 3 0 6 16 19 77 1 0 36 0 7 113 chain 114796 chr5 180915260 + 43696104 43697665 THE1B-int 1605 - 2 1605 32845 199 0 14 254 5 4 376 11 12 75 41 41 164 7 32 124 1 2 283 8 10 13 chain 22409 chr5 180915260 + 43697665 43698068 THE1B 368 - 0 368 118447 100 60 14 57 3 0 23 28 27 33 1 0 57 0 16 41 chain 13900 chr5 180915260 + 43706709 43706860 L1PA5 6144 + 5620 5771 144916 151 chain 32956 chr5 180915260 + 43706860 43707232 L1PA5 6144 + 5772 6144 79284 372 chain 30194 chr5 180915260 + 43708513 43708827 AluYb8 318 + 0 314 84210 314 chain 9463 chr5 180915260 + 43717935 43718052 Tigger1 2417 - 0 117 163265 117 chain 547798 chr5 180915260 + 43718055 43724076 L1PA2 6032 + 2 6029 1730 2045 0 1 1032 3 1 57 0 4 39 0 1 252 0 1 1523 0 1 1070 chain 524056 chr5 180915260 + 43741323 43749448 L1PA4 6152 - 1 6152 4761 148 11 11 100 1 0 513 1 3 67 1 5 1142 2 1 550 0 1 54 0 1 1248 0 1 58 0 27 7 2022 0 809 0 5 280 0 12 44 0 2 22 2 0 9 0 1 454 1 0 114 12 6 123 0 3 10 6 5 17 0 1 297 chain 129553 chr5 180915260 + 43745274 43747238 SVA_B 1603 - 0 1603 28188 272 7 6 331 92 19 71 6 7 33 1 0 12 1 0 18 123 0 14 39 0 228 115 0 551 7 9 12 11 0 20 chain 2484 chr5 180915260 + 43746177 43746205 SVA_B 1603 - 547 575 233277 28 chain 2347 chr5 180915260 + 43746522 43746547 SVA_B 1603 - 1127 1152 204234 25 chain 320985 chr5 180915260 + 43752151 43759655 L1PA11 4918 - 411 4910 12559 19 2 1 13 2 0 67 4 0 13 2 1 65 13 10 56 1 0 36 2321 4 137 15 16 42 17 4 114 0 1 177 12 1 62 1 2 52 27 15 6 0 1 43 0 1 6 0 1 544 311 0 289 4 1 26 0 1 164 0 6 61 0 1 21 3 6 53 1 5 118 2 5 26 1 0 148 65 1 58 5 7 185 2 0 31 0 3 73 5 6 44 0 8 19 0 2 237 4 9 37 1 0 129 0 4 240 0 1 171 7 8 310 306 6 258 2 1 6 2 0 26 11 10 46 2 0 17 1 0 22 23 20 29 2 0 24 0 3 7 chain 12609 chr5 180915260 + 43781613 43781779 L1PB4 2604 - 59 224 149810 140 0 1 18 2 0 6 chain 520739 chr5 180915260 + 43791740 43797869 L1PA4 6152 + 1 6143 5077 124 3 17 14 24 10 696 7 6 460 5 7 572 0 1 100 1 2 207 0 8 619 1 0 149 0 1 37 0 1 175 1 0 308 0 1 966 0 1 1660 chain 12535 chr5 180915260 + 43798337 43798481 L1PA5 6144 - 79 223 150100 144 chain 525602 chr5 180915260 + 43808293 43814418 L1PA5 6144 - 13 6143 4619 317 1 2 47 0 4 2774 0 1 1105 0 1 666 0 1 87 3 4 92 8 5 296 1 0 728 chain 126795 chr5 180915260 + 43823986 43825507 SVA_B 1603 - 0 1603 28858 489 0 5 93 2 1 21 1 83 46 1 0 13 1 0 656 3 4 150 23 20 22 chain 12033 chr5 180915260 + 43847900 43848139 L1PB1 5432 - 10 227 152058 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 15 8 0 11 2 0 4 1 0 16 2 1 43 1 0 14 3 2 15 chain 14639 chr5 180915260 + 43864691 43864865 L1PA5 6144 + 5960 6134 142458 174 chain 19002 chr5 180915260 + 43897458 43897681 L1PA5 6144 - 0 223 130103 223 chain 7455 chr5 180915260 + 43904167 43904249 L1PA2 6032 + 5950 6032 174421 82 chain 21669 chr5 180915260 + 43905764 43906162 L1PB1 5432 - 5 369 121505 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 14 1 15 1 0 45 1 0 15 2 1 52 2 0 9 5 1 11 1 0 9 1 0 24 3 0 7 1 4 40 chain 68564 chr5 180915260 + 43908808 43910644 L1P2 5180 + 2 1841 16012 148 2 1 97 12 11 230 27 26 48 1 0 84 7 11 125 0 15 20 17 0 579 0 4 298 0 1 141 chain 311434 chr5 180915260 + 43910658 43914167 L1PA3long 6157 - 4 3590 12950 655 13 90 2841 chain 53851 chr5 180915260 + 43914177 43915619 L1P2 5180 + 1841 3292 16012 283 1 3 240 3 4 21 0 4 106 0 1 765 0 1 23 chain 242264 chr5 180915260 + 43915619 43918661 L1P2 5180 - 2127 5177 16634 620 0 3 137 0 1 165 1 3 197 0 2 60 0 1 74 0 1 321 0 1 235 0 1 218 1 0 46 0 1 119 0 1 30 17 0 18 0 15 220 1 0 48 4 6 5 2 0 310 1 0 43 2 1 147 chain 5199 chr5 180915260 + 43926275 43926357 L1PB1 5432 - 5 83 193029 5 2 0 18 1 0 13 1 0 21 1 0 12 0 1 8 chain 59944 chr5 180915260 + 43928153 43928962 L1PA8 5853 + 5031 5842 52848 62 14 15 96 10 1 359 1 0 44 2 0 6 0 4 60 2 1 15 6 18 28 2 1 19 1 0 82 chain 84750 chr5 180915260 + 43930929 43932011 L1PA8A 6298 - 10 1094 41616 96 11 13 26 2 1 662 2 1 127 0 2 156 chain 116217 chr5 180915260 + 43932024 43933725 L1PA7 6471 - 1 1754 32368 12 1 0 24 9 0 7 1 10 95 3 1 79 1 0 521 3 0 6 3 6 9 13 0 26 3 1 56 0 3 70 144 212 85 3 4 6 1 0 520 chain 10636 chr5 180915260 + 43932966 43933095 L1PA7 6471 + 5428 5557 156025 129 chain 28664 chr5 180915260 + 43950043 43950353 AluYf4 310 + 0 310 90471 310 chain 24166 chr5 180915260 + 43950987 43951333 THE1C 375 + 0 345 109395 176 34 33 136 chain 514672 chr5 180915260 + 43953009 43959020 L1PA4 6152 + 21 6152 5705 758 1 4 660 3 1 975 1 2 844 0 2 673 0 1 370 3 0 876 0 106 48 0 2 665 0 1 32 0 4 96 0 5 6 chain 503275 chr5 180915260 + 43960054 43966478 L1PA7 6471 - 1 6458 6654 6 5 0 6 1 0 151 0 2 96 0 1 77 0 1 40 0 1 222 0 1 162 1 0 76 0 4 15 6 7 734 3 4 299 4 5 556 0 2 505 10 7 5 0 1 711 0 2 130 0 1 19 7 2 108 5 6 262 0 1 452 0 1 5 6 16 7 10 0 477 16 17 262 1 2 218 1 0 33 0 12 131 1 0 44 4 5 155 0 2 62 1 0 87 0 10 143 10 12 76 chain 77884 chr5 180915260 + 43968936 43969816 L1P1 4361 - 1578 2458 44487 880 chain 150408 chr5 180915260 + 43969816 43971523 L1PA4 6152 + 4434 6152 24551 1470 0 3 93 2 3 136 0 7 6 chain 272520 chr5 180915260 + 43977385 43981320 L1PA10 4194 - 33 4019 15046 11 1 0 34 3 0 11 0 1 565 2 0 45 6 5 115 9 10 409 0 1 248 0 5 23 32 15 33 0 1 400 22 13 72 7 8 296 16 11 47 14 16 8 2 0 110 7 9 330 10 14 4 0 1 97 0 5 14 8 9 9 1 0 71 1 0 204 0 1 32 0 1 265 14 135 44 3 1 7 7 0 15 1 0 3 0 3 11 1 0 7 1 0 21 2 0 11 56 30 7 1 0 15 2 0 16 0 1 4 14 11 8 2 0 9 23 17 7 3 0 10 2 0 14 chain 3999 chr5 180915260 + 43983970 43984017 THE1-int 844 - 745 792 207403 47 chain 7576 chr5 180915260 + 44001494 44001579 MER121 330 - 126 211 173695 85 chain 59650 chr5 180915260 + 44006784 44007513 LTR12 884 - 0 884 53019 151 7 8 331 0 22 18 0 132 222 chain 526609 chr5 180915260 + 44013907 44019970 L1PA4 6152 + 0 6136 4533 126 3 17 69 7 8 512 1 0 330 0 2 1059 1 57 239 1 2 505 0 1 269 9 7 1251 0 3 609 1 2 214 2 0 102 1 0 752 chain 29376 chr5 180915260 + 44029492 44029834 L1PA5 6144 - 0 342 87180 342 chain 19683 chr5 180915260 + 44033058 44033423 L1M1 2793 + 744 1098 128150 18 4 2 4 1 0 4 2 0 23 22 21 13 6 4 6 1 0 54 14 12 98 1 0 37 2 3 55 chain 345451 chr5 180915260 + 44041013 44044947 L1PA3long 6157 + 6 6154 11747 1231 20 1 1967 0 1982 143 0 1 499 0 250 74 chain 480674 chr5 180915260 + 44059991 44065453 L1PA5 6144 - 1 5474 7703 258 2 0 1655 0 1 780 1 9 270 1 0 12 1 0 156 0 1 1193 0 4 408 0 1 725 chain 65938 chr5 180915260 + 44081814 44082619 L1PA6 6164 - 2 808 50128 9 1 0 245 2 1 206 1 0 326 4 8 11 chain 428589 chr5 180915260 + 44103745 44109114 L1PA7 6471 - 5 6471 9340 7 3 0 663 0 1037 125 0 1 54 0 1 7 1 0 54 4 5 352 3 62 96 7 6 240 0 1 47 0 3 174 1 3 25 4 0 35 0 5 551 0 1 40 0 1 229 1 0 379 1 0 91 0 5 140 0 1 29 0 2 18 0 3 267 0 1 105 0 3 334 6 0 176 0 3 343 0 2 167 2 0 102 0 1 57 17 0 60 1 0 6 4 5 341 chain 64811 chr5 180915260 + 44111189 44111970 LTR17 781 + 0 781 50654 119 0 9 171 10 0 28 0 1 453 chain 62783 chr5 180915260 + 44114398 44115179 LTR17 781 + 0 781 51548 121 0 9 169 10 0 28 0 1 373 0 1 4 14 13 62 chain 115958 chr5 180915260 + 44122029 44123626 L1PBa 3878 - 1272 2882 32472 80 1 0 4 1 2 121 1 0 18 10 31 434 2 0 90 2 1 203 2 0 5 7 0 11 2 1 299 1 3 61 15 18 203 9 10 15 chain 207559 chr5 180915260 + 44124501 44127582 L1PB1 5432 + 2388 5427 18676 108 11 0 60 11 12 65 0 1 205 19 17 30 0 3 41 25 30 268 10 9 492 2 4 162 1 2 236 0 3 256 0 11 186 1 0 19 17 18 178 1 0 198 1 0 12 3 4 11 11 10 59 41 16 24 35 30 52 2 1 15 1 0 43 1 0 13 29 19 15 3 1 5 1 0 14 9 7 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 24308 chr5 180915260 + 44138051 44138330 L1P1 4361 - 33 310 108612 23 1 0 155 1 0 99 chain 49562 chr5 180915260 + 44138330 44138886 L1PA3long 6157 + 5599 6156 59349 415 0 1 141 chain 58835 chr5 180915260 + 44152387 44153012 L1HS 6032 - 1523 2148 53378 625 chain 144050 chr5 180915260 + 44153012 44154557 L1HS 6032 + 4485 6032 25469 1441 0 2 104 chain 17350 chr5 180915260 + 44157831 44158067 MER61-int 3695 + 3025 3262 134662 127 8 9 4 1 0 4 0 1 92 chain 259275 chr5 180915260 + 44176854 44180709 L1PB1 5432 - 74 3917 15740 12 25 20 18 27 17 12 1 0 43 1 0 15 1 3 31 0 1 18 2 0 7 7 3 14 2 1 5 1 0 23 5 0 8 0 6 138 17 18 24 0 4 209 1 0 47 19 23 11 3 0 247 3 1 25 29 30 129 0 1 74 26 7 146 10 11 104 0 1 75 6 7 55 1 0 33 0 1 39 13 14 9 0 1 132 3 0 552 6 10 34 0 3 56 8 5 25 0 4 302 4 7 26 60 67 451 0 1 291 5 6 66 4 0 13 16 21 30 chain 102441 chr5 180915260 + 44182324 44183508 L1PA4 6152 - 11 1201 36151 249 9 8 535 0 5 42 0 1 323 0 1 26 chain 394631 chr5 180915260 + 44201845 44206875 L1PA8 5853 - 0 5160 10296 93 1 0 18 1 0 37 17 23 74 3 1 43 1 0 207 0 1 173 0 81 93 2 0 194 1 0 89 1 0 671 9 8 168 1 2 74 0 6 5 0 1 138 5 6 241 12 13 175 1 0 25 1 2 199 0 1 86 0 1 297 0 3 119 1 14 212 0 1 49 0 1 190 0 10 508 0 12 251 3 4 88 2 0 18 5 7 392 1 0 35 chain 20001 chr5 180915260 + 44213423 44213710 THE1D 372 + 79 372 127142 25 0 1 23 0 4 52 4 0 6 12 18 16 1 0 148 chain 4403 chr5 180915260 + 44215870 44215963 L1PREC2 3366 - 2463 2555 201898 38 26 25 29 chain 76935 chr5 180915260 + 44221981 44223071 L1PA8 5853 + 4758 5800 45003 251 6 0 75 5 3 14 0 1 68 7 9 48 4 1 86 0 3 74 6 5 125 1 0 43 1 0 16 0 1 29 2 0 65 9 8 57 2 1 22 1 0 25 36 0 12 chain 43790 chr5 180915260 + 44236441 44236954 LTR7 482 + 0 482 64465 278 32 1 203 chain 26753 chr5 180915260 + 44279672 44280099 MER75 514 - 0 444 97153 16 2 0 151 10 28 29 43 42 89 1 3 86 chain 4678 chr5 180915260 + 44283552 44283626 L1MA4 2864 + 2724 2790 198770 13 6 0 30 2 0 23 chain 48150 chr5 180915260 + 44286213 44286749 L1PA3long 6157 - 0 535 60362 149 1 0 386 chain 29400 chr5 180915260 + 44286749 44287071 L1HS 6032 + 1600 1922 87072 322 chain 126970 chr5 180915260 + 44321087 44323100 Charlie3 2679 + 905 2679 28821 27 5 1 328 0 3 172 27 26 220 301 0 88 0 3 140 11 14 168 0 9 11 1 2 105 1 0 8 0 1 166 0 51 107 3 0 124 chain 2498 chr5 180915260 + 44325148 44325196 L1PA4 6152 + 5311 5345 233150 7 14 0 27 chain 59444 chr5 180915260 + 44325196 44325871 L1PA4 6152 + 5350 6038 53143 615 0 1 13 7 19 40 chain 9510 chr5 180915260 + 44325871 44325974 L1PA4 6152 + 6039 6142 163016 103 chain 13267 chr5 180915260 + 44378051 44378252 Tigger4 2445 - 135 331 147224 25 2 1 15 2 1 53 2 0 28 2 1 72 chain 24642 chr5 180915260 + 44396844 44397198 THE1B 368 + 0 368 106768 44 6 24 94 20 19 16 2 0 97 1 0 74 chain 23933 chr5 180915260 + 44407631 44407915 AluSc8 310 + 19 305 110730 113 0 3 71 1 0 99 chain 5672 chr5 180915260 + 44459238 44459342 MER39 703 + 545 652 188375 59 22 25 23 chain 36423 chr5 180915260 + 44478115 44478574 MER4A1 472 + 0 458 74337 235 7 6 217 chain 7770 chr5 180915260 + 44482905 44482996 MER41C 542 - 451 542 172482 91 chain 57494 chr5 180915260 + 44483232 44483963 LTR17 781 + 0 766 54244 31 0 1 100 0 14 15 3 2 164 1 0 401 0 22 16 chain 10661 chr5 180915260 + 44515102 44515271 MER121 330 - 129 304 157561 70 0 1 62 23 28 14 chain 123153 chr5 180915260 + 44523308 44524683 L1PA3long 6157 - 1 1376 29990 1375 chain 42981 chr5 180915260 + 44524683 44525164 L1PA3long 6157 + 4272 4752 65336 84 1 0 396 chain 46592 chr5 180915260 + 44530892 44531540 LTR12_ 688 + 0 688 61537 130 2 51 156 0 2 103 47 17 55 0 18 41 0 1 114 chain 72268 chr5 180915260 + 44531540 44532612 L1PB1 5432 - 474 1511 47349 253 0 2 78 1 0 4 3 0 139 1 0 10 21 22 16 15 12 152 11 13 45 41 7 108 0 1 66 4 5 104 chain 30819 chr5 180915260 + 44552604 44552998 MLT2A1 477 + 0 395 82838 140 0 1 27 1 5 212 4 0 10 chain 161392 chr5 180915260 + 44576203 44578025 L1PA4 6152 - 9 1863 23136 165 4 0 343 0 33 225 1 0 69 0 4 1015 chain 66225 chr5 180915260 + 44578026 44578808 L1PA4 6152 + 3515 4282 49995 169 2 0 94 21 6 156 0 1 329 0 1 11 chain 535882 chr5 180915260 + 44579046 44585049 L1PA3long 6157 + 0 6152 3464 152 0 1 420 0 1 202 0 128 99 0 3 165 7 22 1739 0 1 1135 0 1 2049 1 0 34 chain 31266 chr5 180915260 + 44606022 44606485 LTR2 463 - 0 463 82050 56 1 0 9 36 38 55 4 0 150 0 5 6 9 4 8 0 3 129 chain 76974 chr5 180915260 + 44617766 44618633 L1P1 4361 - 56 922 44986 154 1 0 712 chain 41410 chr5 180915260 + 44618633 44619091 L1PA3long 6157 + 5071 5526 66817 248 3 0 207 chain 56219 chr5 180915260 + 44619091 44619721 L1PA3long 6157 + 5527 6154 55008 617 3 0 10 chain 228655 chr5 180915260 + 44623756 44626354 L1PA5 6144 + 3532 6142 17377 145 2 0 998 0 11 611 0 4 590 0 3 241 4 0 7 chain 16760 chr5 180915260 + 44663007 44663193 L1PA4 6152 - 277 463 136228 186 chain 25420 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chain 22082 chr5 180915260 + 44752856 44753216 THE1B 368 + 0 368 119879 131 7 11 27 1 0 21 17 24 18 1 0 7 13 12 56 1 0 4 0 1 56 chain 456061 chr5 180915260 + 44756005 44761167 L1PA4 6152 + 1009 6151 8542 24 0 1 327 47 20 276 0 1 215 0 1 248 0 2 7 2 0 1424 0 6 123 2 0 2467 chain 42460 chr5 180915260 + 44788679 44789191 MER9a2 513 + 0 513 66059 416 0 1 96 chain 253362 chr5 180915260 + 44789979 44793119 HERVK9-int 4720 + 36 4720 16064 13 13 9 52 0 1 13 1 0 8 1 0 30 1 0 880 1 0 454 0 924 214 0 1 16 67 695 25 1 0 78 2 1 1270 chain 42081 chr5 180915260 + 44793119 44793631 MER9a2 513 + 0 513 66518 22 1 0 307 0 1 118 0 1 64 chain 37163 chr5 180915260 + 44794200 44794725 MER41C 542 - 0 542 73290 130 19 32 47 12 13 31 0 1 142 4 5 91 0 1 49 chain 5986 chr5 180915260 + 44794784 44794851 MER4A1 472 + 405 472 185379 67 chain 169705 chr5 180915260 + 44824629 44826575 L1PA4 6152 - 19 1988 22087 149 5 6 684 2 1 250 0 13 681 0 2 73 1 9 101 chain 25500 chr5 180915260 + 44838253 44838613 THE1D 372 + 0 372 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95842 132 2 0 143 0 1 19 chain 24166 chr5 180915260 + 51666941 51667219 AluY 311 + 20 299 109392 112 0 1 166 chain 57594 chr5 180915260 + 51675043 51675710 L1PA5 6144 - 10 676 54190 53 0 1 81 6 4 527 chain 45140 chr5 180915260 + 51676740 51677432 MER4A 717 + 0 717 62878 125 4 0 10 13 14 102 0 7 11 8 4 21 0 18 85 3 5 66 23 31 17 15 13 181 1 0 7 chain 7651 chr5 180915260 + 51689092 51689207 MLT1A0 366 + 232 348 173225 49 10 11 56 chain 55159 chr5 180915260 + 51693105 51693795 LTR12_ 688 + 0 671 55609 41 0 6 83 25 0 8 0 1 340 1 0 192 chain 303679 chr5 180915260 + 51693815 51697594 HERV9-int 5642 + 181 4820 13259 267 13 9 143 2 3 109 0 4 79 1 0 224 79 0 25 3 0 63 3 0 502 0 1 178 0 3 49 6 8 197 0 1 964 7 942 46 0 4 389 11 10 408 1 0 6 0 1 4 chain 40921 chr5 180915260 + 51699123 51699682 LTR12_ 688 + 0 555 68007 146 0 24 48 0 1 209 60 31 96 chain 5995 chr5 180915260 + 51730014 51730387 MLT1B 390 + 3 374 185289 27 8 7 13 5 15 20 230 219 31 1 0 4 6 7 28 chain 24070 chr5 180915260 + 51766136 51766428 L1PA7 6471 + 6162 6459 109924 144 10 15 138 chain 12872 chr5 180915260 + 51784248 51784393 MER11B 1079 + 0 145 148744 145 chain 31274 chr5 180915260 + 51791971 51792329 L1PA4 6152 - 88 445 82029 252 1 0 105 chain 9484 chr5 180915260 + 51795627 51795823 MSTA 426 + 189 405 163141 49 13 11 4 0 1 42 32 52 18 1 2 37 chain 27384 chr5 180915260 + 51814593 51814944 THE1A 353 + 0 353 95017 111 1 0 85 0 2 76 0 1 78 chain 479301 chr5 180915260 + 51829693 51835212 L1PA4 6152 + 620 6152 7752 621 1 2 797 0 1 122 0 1 309 0 1 524 0 1 166 2 0 112 5 6 592 5 6 286 0 1 1267 0 1 700 0 6 10 chain 10239 chr5 180915260 + 51835607 51835844 L1PB1 5432 + 5194 5415 159422 22 22 20 14 1 0 32 1 0 19 11 7 18 9 6 14 2 0 24 1 0 22 1 0 11 2 1 11 chain 28102 chr5 180915260 + 51855066 51855420 THE1A 353 - 0 353 92641 243 2 1 109 chain 154652 chr5 180915260 + 51863760 51865684 L1PA7 6471 - 16 1939 24024 254 0 2 520 4 0 58 1 0 344 1 0 132 0 2 36 0 1 157 1 0 224 8 9 184 chain 269789 chr5 180915260 + 51905603 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33395 chr5 180915260 + 52041118 52041562 MLT2A1 477 - 0 477 78575 34 7 45 13 1 0 190 2 0 25 4 1 84 0 1 84 chain 23807 chr5 180915260 + 52054311 52054593 AluSp 311 + 10 292 111433 282 chain 18121 chr5 180915260 + 52058701 52058909 L1PA5 6144 + 5931 6139 132535 208 chain 3990 chr5 180915260 + 52087527 52087577 HY3 101 + 28 78 207522 50 chain 3113 chr5 180915260 + 52089267 52089303 MER104 178 - 32 68 222688 36 chain 98202 chr5 180915260 + 52114899 52115989 L1PA4 6152 - 418 1510 37233 889 0 2 201 chain 33596 chr5 180915260 + 52115989 52116358 L1PA4 6152 + 5773 6143 78244 221 0 1 148 chain 53413 chr5 180915260 + 52144417 52145016 L1PA5 6144 - 4 603 56749 599 chain 24747 chr5 180915260 + 52200414 52200698 AluY 311 + 12 298 106188 101 0 1 18 0 1 165 chain 8409 chr5 180915260 + 52224500 52224673 LTR54 533 - 40 215 168796 9 1 0 30 29 30 60 12 14 32 chain 2125 chr5 180915260 + 52228938 52228980 L1MA5A 2387 - 12 51 237416 22 3 1 12 1 0 4 chain 29322 chr5 180915260 + 52231794 52232105 AluYa5 310 - 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52378520 52378552 L1MC1 2226 - 42 74 226678 32 chain 3230 chr5 180915260 + 52384190 52384228 MADE1 96 - 7 45 220420 38 chain 17184 chr5 180915260 + 52405981 52406307 MER4A1 472 - 0 345 135080 68 2 4 104 68 75 14 0 3 5 10 18 47 1 0 7 chain 28945 chr5 180915260 + 52423972 52424280 AluYb8 318 - 11 318 89245 181 1 0 126 chain 544016 chr5 180915260 + 52436902 52443039 L1PA3long 6157 + 4 6157 2208 436 0 1 1018 5 4 1628 0 1 79 1 0 814 0 1 802 1 0 4 0 1 441 1 10 112 0 5 165 0 1 630 chain 18817 chr5 180915260 + 52446898 52447246 THE1B 368 + 0 360 130625 64 3 8 29 21 22 53 60 67 60 1 0 57 chain 28980 chr5 180915260 + 52459113 52459420 AluYa5 310 - 3 310 89089 307 chain 7417 chr5 180915260 + 52473935 52474101 Tigger3c 601 + 332 470 174676 19 10 0 12 1 11 11 6 7 42 29 0 36 chain 506470 chr5 180915260 + 52480880 52487598 L1PA7 6471 - 22 6445 6436 107 0 1 31 4 5 679 6 5 23 1 6 364 3 0 76 2 7 131 8 1 335 0 4 585 0 3 5 3 0 71 10 9 80 4 0 364 0 1 92 39 4 128 0 1 231 0 4 38 1 2 182 1 2 228 0 2 6 352 2 66 18 4 11 0 26 225 0 28 344 0 3 17 0 1 59 1 2 60 4 8 10 0 1 218 0 1 186 0 14 193 0 16 20 1 0 4 0 1 284 2 1 16 1 0 403 0 2 159 1 0 225 chain 30034 chr5 180915260 + 52484718 52485036 AluYb9 318 - 0 318 84702 318 chain 53768 chr5 180915260 + 52494344 52495095 MER4E 760 - 7 760 56494 75 18 21 213 1 0 80 5 7 179 24 27 127 6 1 23 chain 189038 chr5 180915260 + 52496922 52500602 HERVH48-int 3304 + 143 3245 20142 12 3 0 6 3 0 10 22 17 11 2 0 27 2 0 30 13 0 11 32 25 4 1 0 65 4 0 8 1 0 72 1 0 12 6 0 11 12 6 82 1 0 7 3 1 10 3 0 5 3 1 9 1 0 17 15 0 24 13 4 10 2 1 5 4 0 17 1 0 4 3 1 65 2 0 42 1 0 27 7 6 68 25 17 118 4 1 9 1 0 20 1 0 15 2 0 32 3 0 3 2 0 22 2 0 4 1 0 15 1 0 21 2 0 26 1 0 19 3 0 7 11 5 122 1 0 12 1 0 8 3 2 216 4 3 19 3 4 63 2 1 291 7 0 94 1 0 149 1 0 21 2 0 67 1 0 12 1 0 47 1 0 17 315 0 149 6 5 55 8 6 19 1 0 44 1 0 4 1 0 10 3 2 9 0 1 20 2 0 15 2 0 9 231 180 14 1 0 17 3 1 5 1 0 45 1 0 3 2 0 68 62 46 56 107 81 23 chain 53417 chr5 180915260 + 52508422 52509183 MER4E 760 - 0 760 56744 316 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52683036 52683298 THE1B 368 - 61 332 137667 36 0 1 26 6 5 9 1 0 6 6 15 9 1 0 5 2 5 21 1 0 133 chain 30032 chr5 180915260 + 52705486 52705801 AluYb8 318 + 1 316 84709 315 chain 6963 chr5 180915260 + 52710110 52710204 THE1B 368 - 260 368 177730 24 2 16 68 chain 2778 chr5 180915260 + 52712381 52712433 MLT1J1 437 - 348 401 229067 28 12 13 12 chain 5503 chr5 180915260 + 52790104 52790168 AluJb 308 + 203 267 190011 64 chain 415529 chr5 180915260 + 52790907 52795619 L1PA5 6144 + 1427 6141 9652 952 0 4 1299 1 0 265 1 0 288 1 0 1766 0 1 139 chain 35071 chr5 180915260 + 52844394 52844845 LTR2 463 + 0 451 76090 255 3 1 103 15 16 14 0 1 61 chain 25219 chr5 180915260 + 52881294 52881591 AluSp 311 + 1 301 103641 90 0 3 207 chain 32288 chr5 180915260 + 52885431 52885855 MLT2A1 477 + 4 477 80381 164 13 10 51 1 0 156 3 56 36 chain 29161 chr5 180915260 + 52917520 52917829 AluYg6 310 - 1 310 88254 309 chain 490745 chr5 180915260 + 52921719 52927994 L1PA7 6471 - 5 6466 7329 7 3 0 447 0 2 46 0 4 338 2 0 380 0 2 412 1 0 4 1 2 527 0 1 481 20 24 210 0 5 71 5 0 17 3 2 852 0 1 109 0 2 235 1 0 23 1 0 234 0 1 654 0 1 449 4 1 6 0 3 125 1 0 53 4 14 191 1 0 13 18 188 5 0 1 4 1 0 41 5 4 11 104 103 155 chain 10034 chr5 180915260 + 52941110 52941237 MER85 139 - 0 137 160409 40 0 10 87 chain 3397 chr5 180915260 + 52945666 52945744 L1PA17 2846 - 170 246 217140 19 21 20 5 1 0 32 chain 512562 chr5 180915260 + 52955845 52961801 L1PA4 6152 - 18 6149 5915 45 8 0 76 0 7 79 1 0 28 2 1 1462 4 1 77 0 8 506 0 3 152 1 0 343 2 0 12 7 184 47 1 0 266 0 1 54 10 0 74 0 5 9 6 1 177 1 0 703 0 2 599 0 1 4 1 0 48 1 4 524 0 2 626 chain 51531 chr5 180915260 + 52976104 52976683 L1PA3long 6157 + 5579 6157 57943 250 3 0 309 0 2 17 chain 32475 chr5 180915260 + 52980906 52981282 L1PA4 6152 - 13 384 80068 25 1 0 64 4 0 282 chain 110673 chr5 180915260 + 52981293 52982542 L1PA3long 6157 - 4 1256 34039 833 1 0 12 0 4 403 chain 156694 chr5 180915260 + 52982564 52984951 L1PA11 4918 + 2330 4517 23769 300 14 14 735 6 8 524 294 72 84 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5 7 8 63 12 0 149 1 9 165 19 31 168 5 6 142 3 1 102 12 13 50 0 4 212 1 11 466 8 0 252 3 1 134 1 0 227 1 4 78 0 1 384 1 0 279 0 4 45 0 1 150 0 3 49 0 5 79 1 0 128 0 8 241 0 2 204 0 1 95 4 1 151 0 1 369 7 0 128 1 0 130 22 10 7 0 7 81 5 4 9 0 1 456 1 0 44 2 0 70 13 10 72 1 0 88 chain 18053 chr5 180915260 + 53022697 53022965 MER21A 919 + 19 290 132724 100 14 0 24 17 34 113 chain 114631 chr5 180915260 + 53031200 53032610 L1PA7 6471 - 850 2278 32909 410 0 1 215 5 4 69 1 15 235 5 9 156 0 1 246 6 5 62 chain 65594 chr5 180915260 + 53032624 53033414 L1PA7 6471 + 5650 6461 50298 13 4 0 28 0 4 694 8 29 43 chain 398406 chr5 180915260 + 53035388 53040961 L1PB1 5432 + 19 5410 10158 29 5 15 8 9 0 311 0 1 160 6 3 146 4 11 368 0 1 170 0 4 149 1 0 7 2 0 1 5 0 57 2 1 524 6 9 354 14 0 153 0 2 339 1 0 565 0 1 34 0 1 28 0 1 253 11 9 152 3 4 119 0 1 60 0 1 38 22 13 48 2 0 314 7 8 41 0 1 75 8 13 73 0 1 119 5 0 222 10 11 4 1 0 11 1 2 38 161 9 22 1 0 17 0 1 4 6 2 11 0 3 48 2 1 16 1 0 44 1 0 15 3 0 8 12 4 19 8 5 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23 17 18 42 chain 256047 chr5 180915260 + 53095210 53098632 L1P2 5180 + 2 3267 15934 143 6 5 44 7 6 34 10 9 134 0 2 136 1 0 272 1 16 318 23 24 283 0 5 6 0 1 20 0 4 194 0 3 545 0 2 119 1 0 180 0 36 189 6 7 479 225 3 46 chain 12935 chr5 180915260 + 53098428 53098585 L1PA4 6152 - 16 173 148481 157 chain 503262 chr5 180915260 + 53098639 53104749 L1PA6 6164 + 2 6162 6655 199 0 1 133 12 12 162 2 1 429 0 25 213 0 9 1146 3 4 215 0 1 637 0 1 916 0 4 166 0 3 91 0 4 207 5 6 337 0 1 811 0 2 110 2 0 314 chain 109082 chr5 180915260 + 53132618 53134110 LTR12C 1709 + 0 1709 34425 212 4 3 66 14 15 42 7 50 76 11 10 130 0 1 108 0 159 199 0 47 97 44 13 390 8 7 84 chain 182539 chr5 180915260 + 53136308 53138851 L1PBa 3878 + 1259 3750 20734 99 14 15 5 0 5 32 14 2 39 0 1 39 0 1 120 16 5 139 21 31 13 0 1 353 1 2 32 0 8 236 1 0 266 1 5 6 2 0 292 9 10 31 2 1 31 0 3 41 4 5 93 2 0 253 57 0 241 2 1 22 2 0 12 chain 8945 chr5 180915260 + 53140427 53140639 L1MCa 1829 + 1121 1322 165894 40 87 76 85 chain 87416 chr5 180915260 + 53142152 53143144 L1PA3long 6157 + 5157 6149 40598 143 1 0 776 7 8 65 chain 504653 chr5 180915260 + 53144211 53150662 L1PA6 6164 - 3 6164 6562 9 3 0 86 1 2 386 4 1 356 0 6 106 0 7 413 0 6 139 5 6 269 0 4 469 0 1 710 2 3 329 329 0 421 0 2 889 8 9 96 8 13 218 9 10 182 0 1 150 9 1 37 0 17 109 0 1 184 17 16 89 1 0 408 chain 9707 chr5 180915260 + 53206351 53206462 L1PA5 6144 + 6031 6142 162049 111 chain 72720 chr5 180915260 + 53278015 53278879 L1PA7 6471 - 3 865 47155 29 4 0 727 1 4 87 1 0 15 chain 12834 chr5 180915260 + 53356311 53356495 THE1B 368 + 173 366 148910 23 1 3 94 1 0 13 5 13 47 chain 58931 chr5 180915260 + 53357459 53358184 THE1B-int 1605 + 872 1597 53438 725 chain 25391 chr5 180915260 + 53371964 53372279 AluY 311 + 0 311 102732 123 4 3 7 3 0 178 chain 22854 chr5 180915260 + 53381748 53382034 AluSp 311 - 15 302 116312 14 7 8 265 chain 9988 chr5 180915260 + 53402331 53402461 MER2 342 - 74 206 160638 94 0 2 36 chain 3968 chr5 180915260 + 53410859 53410907 MER63A 208 + 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256 771 0 4 14 12 4 4 0 1 12 chain 8679 chr5 180915260 + 53735551 53735689 MER47A 366 + 144 277 167307 45 25 20 68 chain 86013 chr5 180915260 + 53740088 53741159 MER11B 1079 + 0 1074 41150 316 1 18 226 40 22 191 0 3 74 0 1 223 chain 81054 chr5 180915260 + 53757022 53758055 MER11C 1089 - 25 1082 43162 144 1 0 54 0 1 127 0 1 38 7 9 132 0 1 171 1 0 65 0 4 62 0 9 14 0 1 71 0 7 146 chain 53975 chr5 180915260 + 53772872 53773517 L1PA5 6144 + 5497 6144 56383 484 14 16 147 chain 27847 chr5 180915260 + 53774596 53774914 L1PA8 5853 - 274 591 93534 15 1 0 302 chain 160656 chr5 180915260 + 53780585 53782426 L1PA5 6144 - 769 2613 23242 593 0 1 469 0 1 39 5 0 7 1 6 583 0 1 144 chain 62800 chr5 180915260 + 53782426 53783145 L1PA5 6144 + 5387 6141 51423 536 7 42 176 chain 10526 chr5 180915260 + 53789657 53789868 MER21A 919 + 401 611 158146 62 58 61 46 4 0 41 chain 42136 chr5 180915260 + 53794048 53794538 MER9a1 513 - 0 513 66463 474 0 23 16 chain 389190 chr5 180915260 + 53794538 53799422 HERVK9-int 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6 255 5 6 36 1 0 218 0 1 90 0 1 123 100 0 287 3 0 34 1 0 11 chain 24212 chr5 180915260 + 53928598 53928900 AluSc 308 - 5 308 109138 98 1 0 184 0 2 19 chain 18507 chr5 180915260 + 53937985 53938240 MER87B 500 - 251 500 131480 223 11 5 21 chain 589 chr5 180915260 + 53943791 53943855 LTR12C 1709 - 0 64 166937 64 chain 22267 chr5 180915260 + 53943891 53944148 AluYk4 311 - 31 288 119048 257 chain 1215 chr5 180915260 + 53944609 53944741 LTR12C 1709 - 672 919 166937 17 2 43 17 30 103 20 1 2 45 chain 13181 chr5 180915260 + 53956474 53956972 MER30 238 + 30 238 147543 77 10 25 23 302 0 35 3 0 48 chain 24047 chr5 180915260 + 53957529 53957807 AluSc8 310 + 28 309 110062 104 0 3 174 chain 150639 chr5 180915260 + 53980492 53982165 L1PA4 6152 - 16 1688 24521 245 1 0 1427 chain 19397 chr5 180915260 + 53987920 53988258 THE1D 372 - 0 372 128958 117 70 86 6 0 1 99 5 22 41 chain 121052 chr5 180915260 + 54007874 54009424 THE1B-int 1605 + 0 1592 30675 185 15 16 55 0 15 117 1 0 42 1 26 61 1 2 951 0 1 121 chain 14272 chr5 180915260 + 54026054 54026294 L1PA6 6164 + 5918 6162 143643 86 7 14 10 15 10 53 16 18 53 chain 20294 chr5 180915260 + 54078522 54078837 L1PA14 3548 + 3132 3440 126244 5 1 0 84 1 0 110 1 0 11 5 1 36 4 2 12 1 0 3 1 0 17 0 4 23 chain 3285 chr5 180915260 + 54080798 54080835 tRNA-Gly-GGA 38 - 1 38 219275 37 chain 278067 chr5 180915260 + 54083565 54086681 L1PA4 6152 - 1 3119 14746 621 1 0 4 0 1 1357 0 1 1125 0 1 8 chain 60845 chr5 180915260 + 54086681 54087382 L1PA4 6152 + 2346 3051 52408 88 1 5 612 chain 90353 chr5 180915260 + 54102260 54103241 L1PA2 6032 - 0 981 39519 981 chain 83945 chr5 180915260 + 54104846 54105899 MER11C 1089 - 26 1089 41932 135 7 8 290 57 58 66 3 11 495 chain 534220 chr5 180915260 + 54108789 54114927 L1PA4 6152 + 18 6143 3686 139 23 10 116 1 0 197 10 5 2295 0 4 622 0 1 760 0 1 1975 chain 44944 chr5 180915260 + 54117942 54118579 MER41B 635 + 0 635 63125 51 2 0 75 0 1 193 11 12 119 31 30 81 6 5 68 chain 17215 chr5 180915260 + 54142520 54142703 L1PA3long 6157 - 561 744 135003 183 chain 50169 chr5 180915260 + 54142719 54143271 L1PA3long 6157 + 5590 6142 58892 552 chain 25057 chr5 180915260 + 54149524 54149886 L1PA8 5853 - 0 370 104518 92 6 5 13 1 0 18 0 1 18 0 13 10 6 5 70 2 0 39 13 12 74 chain 4819 chr5 180915260 + 54155530 54155910 MLT1B 390 - 21 369 197129 21 40 8 5 0 1 41 250 249 23 chain 132191 chr5 180915260 + 54160723 54162304 LTR12C 1709 + 0 1699 27591 262 0 1 456 0 118 156 0 2 77 0 2 23 0 1 14 1 0 5 3 1 106 0 4 404 8 0 14 0 1 52 chain 77654 chr5 180915260 + 54171407 54172454 MER11C 1089 + 0 1063 44673 247 7 16 54 0 4 64 1 0 150 44 43 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 52442 chr5 180915260 + 54188441 54189267 L1PREC2 3366 + 2265 3048 57326 141 2 0 346 2 0 54 2 1 43 1 0 4 3 0 13 29 21 13 10 5 16 2 0 24 9 6 11 22 8 23 18 16 38 chain 2301 chr5 180915260 + 54208301 54208325 MLT1H 522 - 386 410 235372 24 chain 76864 chr5 180915260 + 54213651 54214549 L1PA6 6164 + 5249 6156 45050 148 0 9 750 chain 375050 chr5 180915260 + 54215219 54219946 L1PA7 6471 + 1685 6467 10916 216 0 43 40 0 1 77 7 6 5 0 1 327 0 1 112 0 7 86 0 1 23 3 1 9 9 1 30 2 1 224 1 2 338 0 15 229 9 5 17 1 0 181 0 2 149 4 5 795 0 4 202 1 2 89 0 1 22 4 3 142 0 1 5 1 0 84 7 5 425 2 1 82 1 0 428 1 0 66 17 22 66 1 0 161 1 0 15 4 0 6 chain 25597 chr5 180915260 + 54263041 54263324 L1PA4 6152 - 14 297 101743 283 chain 7383 chr5 180915260 + 54268280 54268426 L1MA4A 3247 - 78 206 174888 21 29 23 18 8 0 18 4 0 48 chain 21265 chr5 180915260 + 54288208 54288901 L1PB1 5432 + 5016 5422 122981 81 273 17 24 1 0 9 27 20 50 8 7 12 1 0 44 1 0 16 2 0 6 16 6 19 2 0 5 15 12 26 1 0 21 1 0 13 1 0 18 chain 296017 chr5 180915260 + 54295369 54298914 L1PA6 6164 + 2619 6160 13647 238 1 4 328 0 1 38 18 22 613 1 2 1283 7 2 612 0 1 218 7 0 22 15 15 136 2 0 6 chain 13028 chr5 180915260 + 54308309 54308494 L1PREC2 3366 + 2690 2867 148142 51 1 0 11 2 0 54 1 0 44 1 0 4 3 0 13 chain 474194 chr5 180915260 + 54308687 54314178 L1PA5 6144 + 3 6141 7905 172 4 1 250 1 0 93 0 4 402 0 1 445 8 645 26 6 5 1635 1 3 1192 0 1 276 0 3 137 0 5 512 1 0 330 chain 539631 chr5 180915260 + 54371188 54377330 L1PA4 6152 - 1 6152 2875 147 0 1 11 2 4 693 0 1 939 0 4 27 0 1 2313 13 3 410 0 1 352 0 1 266 11 5 831 1 15 126 chain 55052 chr5 180915260 + 54379846 54380528 LTR12_ 688 - 0 688 55673 416 11 14 5 3 0 157 0 7 64 1 0 25 chain 16338 chr5 180915260 + 54381726 54381905 L1PA4 6152 + 5964 6143 137373 179 chain 323734 chr5 180915260 + 54382579 54386594 HERV9-int 5642 - 818 5631 12452 302 0 5 43 8 12 400 5 6 104 9 944 115 0 15 832 1 0 940 3 0 3 160 0 312 1 0 75 0 4 108 7 6 587 chain 387902 chr5 180915260 + 54392391 54397124 L1P2 5180 + 2 4776 10525 136 12 11 45 1 0 50 8 7 195 19 0 69 1 0 48 1 0 177 1 0 47 0 15 93 7 8 26 0 1 112 1 31 429 1 8 45 1 0 5 1 5 687 0 1 73 0 1 63 0 4 872 0 2 675 1 2 831 chain 3549 chr5 180915260 + 54423416 54423463 MER5B 177 - 126 172 214555 39 1 0 7 chain 13962 chr5 180915260 + 54431506 54431706 MER30 238 + 31 238 144700 52 10 12 12 4 9 122 chain 3271 chr5 180915260 + 54437635 54437683 MER20 218 - 43 92 219579 16 1 2 31 chain 2681 chr5 180915260 + 54486587 54486751 MIR 256 - 0 164 230427 20 112 112 23 1 0 4 0 1 4 chain 26603 chr5 180915260 + 54497188 54497832 L1MA9 1812 + 947 1601 97643 37 25 24 47 25 27 77 26 34 48 7 6 79 88 91 4 1 0 36 1 0 6 19 27 36 1 0 10 1 0 6 1 0 17 26 22 20 chain 43737 chr5 180915260 + 54545327 54545837 MER41A 554 + 45 554 64523 481 1 0 28 chain 21097 chr5 180915260 + 54561817 54562092 AluSg7 307 - 1 275 123560 13 2 0 147 14 15 99 chain 30072 chr5 180915260 + 54594576 54594890 AluYb8 318 + 0 314 84595 314 chain 24279 chr5 180915260 + 54600137 54600422 AluYc3 301 - 8 296 108784 36 0 2 140 1 2 108 chain 44894 chr5 180915260 + 54622525 54623103 L1PA7 6471 - 1 578 63181 9 2 0 92 13 12 130 1 0 43 0 2 236 1 2 51 chain 24280 chr5 180915260 + 54643562 54643915 THE1B 368 - 12 368 108775 48 0 1 4 2 1 102 2 0 32 1 0 73 10 13 37 0 5 27 2 0 13 chain 77971 chr5 180915260 + 54670680 54671737 MER11C 1089 - 16 1089 44531 11 0 1 141 1 0 54 0 1 127 0 1 38 1 0 4 1 5 86 71 70 148 1 0 61 4 8 62 0 9 246 chain 10443 chr5 180915260 + 54673530 54673684 MER21A 919 + 11 167 158522 46 0 2 22 0 12 62 12 0 12 chain 4475 chr5 180915260 + 54673718 54673884 MER39 703 + 292 450 201060 40 97 89 29 chain 27217 chr5 180915260 + 54732062 54732409 THE1B 368 + 0 366 95534 44 0 15 79 0 4 32 1 0 26 0 2 91 1 0 73 chain 26047 chr5 180915260 + 54758826 54759173 L1PA8 5853 + 5507 5847 99838 55 1 0 46 1 0 74 1 0 6 1 0 17 4 3 32 2 1 19 1 0 87 chain 3821 chr5 180915260 + 54763138 54763230 MER58A 224 + 99 190 210079 19 34 33 39 chain 9260 chr5 180915260 + 54818919 54819160 L1MA3 4352 - 0 233 164259 22 54 50 6 3 0 16 8 6 73 1 0 15 15 17 28 chain 23522 chr5 180915260 + 54828508 54828799 AluSg7 307 + 4 298 113008 122 5 6 140 0 2 24 chain 7339 chr5 180915260 + 54849930 54850020 MER6 865 + 624 715 175160 70 0 1 20 chain 34734 chr5 180915260 + 54854384 54855327 L1PA16 3655 + 2940 3540 76567 49 1 0 153 0 1 4 1 0 44 454 110 45 7 8 61 5 6 119 chain 30285 chr5 180915260 + 54855639 54855954 AluYb8 318 + 0 315 83975 315 chain 28634 chr5 180915260 + 54863621 54864552 L1PB1 5432 - 28 504 90583 9 0 3 22 1 0 24 2 0 14 1 0 5 2 0 18 9 0 13 3 0 16 1 0 39 26 24 47 3 1 11 26 20 24 119 11 91 321 0 84 chain 74180 chr5 180915260 + 54866907 54867867 LTR5_Hs 974 + 0 974 46421 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 256102 chr5 180915260 + 54883366 54886197 L1PA3long 6157 - 0 2831 15930 282 0 3 564 0 4 277 1 0 111 10 0 622 0 2 82 0 2 882 chain 31070 chr5 180915260 + 54899802 54900199 MER57B1 401 - 7 401 82397 185 2 0 19 1 0 190 chain 4840 chr5 180915260 + 54909655 54909711 LTR12C 1709 + 937 993 154997 56 chain 23426 chr5 180915260 + 54909711 54910145 LTR12C 1709 + 674 985 113497 17 41 0 56 82 0 90 1 0 21 0 1 126 chain 3543 chr5 180915260 + 54909728 54909769 LTR12C 1709 + 1010 1051 154997 41 chain 86978 chr5 180915260 + 54910695 54911844 HERV9-int 5642 + 21 5025 40793 145 0 3862 192 0 3 221 5 10 68 20 0 168 5 9 259 0 1 66 chain 44258 chr5 180915260 + 54920745 54921299 MER41A 554 + 0 554 63869 30 2 1 204 0 1 78 1 2 7 1 0 231 chain 31005 chr5 180915260 + 54940549 54940888 L1PA3long 6157 - 2 341 82500 339 chain 28171 chr5 180915260 + 54982985 54983279 AluYd8 298 + 0 294 92400 294 chain 148644 chr5 180915260 + 54991097 54993109 SVA_D 2077 - 1 1745 24798 675 4 0 13 24 0 4 1 0 76 18 46 4 0 1 22 49 0 118 0 1 78 0 2 78 56 15 25 2 0 10 3 0 10 176 0 566 chain 3985 chr5 180915260 + 54991938 54991987 SVA_D 2077 - 1069 1156 69883 26 0 38 23 chain 3436 chr5 180915260 + 54992261 54992317 SVA_D 2077 - 892 947 77457 35 1 0 20 chain 9204 chr5 180915260 + 54992367 54992517 SVA_D 2077 - 1047 1157 77457 67 60 20 23 chain 4738 chr5 180915260 + 54992434 54992494 SVA_D 2077 - 887 947 100421 60 chain 125421 chr5 180915260 + 55012641 55014525 THE1B-int 1605 + 0 1599 29273 195 0 1 234 1 26 207 0 1 11 0 3 75 12 6 202 3 2 505 0 1 5 309 0 125 chain 14507 chr5 180915260 + 55015004 55015227 THE1B 368 + 153 368 142868 16 1 0 6 0 3 5 23 14 96 1 0 75 chain 255264 chr5 180915260 + 55048014 55050819 L1PA3long 6157 - 1 2819 15970 1042 3 16 1760 chain 24864 chr5 180915260 + 55052956 55053427 L1PB1 5432 - 5 455 105551 5 2 0 18 1 0 13 1 0 20 2 1 10 0 1 13 2 0 14 1 0 5 2 0 19 18 6 6 1 0 16 1 0 40 4 3 12 9 8 49 2 0 9 2 0 3 2 0 12 1 0 10 2 1 18 5 0 10 0 16 91 0 1 20 chain 9785 chr5 180915260 + 55073298 55073413 5S 121 + 2 117 161675 115 chain 22654 chr5 180915260 + 55079674 55079958 L1PA6 6164 - 2 288 117304 9 0 2 275 chain 11706 chr5 180915260 + 55096934 55097182 MER30 238 + 0 238 153437 18 36 29 46 9 7 18 15 0 7 2 13 59 0 3 38 chain 32037 chr5 180915260 + 55098784 55099158 L1PA5 6144 - 4 380 80802 9 2 0 8 0 4 355 chain 532413 chr5 180915260 + 55099158 55105286 L1PA3long 6157 - 3 6153 3921 274 1 0 312 0 5 2273 0 1 125 1 0 581 0 3 945 1 3 38 0 3 371 11 12 471 0 1 17 5 12 128 0 1 574 chain 6308 chr5 180915260 + 55116223 55116413 Tigger5 388 - 98 284 182732 19 21 18 17 1 0 12 31 35 26 0 5 17 19 10 27 chain 24173 chr5 180915260 + 55146646 55146952 AluSp 311 + 10 307 109355 170 5 0 103 4 0 24 chain 25140 chr5 180915260 + 55163460 55163816 THE1A 353 - 0 351 104066 83 0 1 118 11 5 26 16 15 29 0 1 73 chain 4846 chr5 180915260 + 55166930 55166991 MIR 256 - 120 182 196823 53 0 1 8 chain 23783 chr5 180915260 + 55171958 55172238 AluSc 308 + 5 285 111572 280 chain 12083 chr5 180915260 + 55176702 55176848 MER50 708 - 0 146 151867 146 chain 25133 chr5 180915260 + 55181104 55181530 MER61C 433 - 0 433 104108 47 5 8 69 13 1 94 2 0 19 1 0 5 0 1 30 31 30 57 0 3 18 10 11 12 1 16 12 chain 24069 chr5 180915260 + 55284317 55284611 AluSp 311 + 5 299 109927 294 chain 44813 chr5 180915260 + 55286574 55287096 L1PA5 6144 - 0 525 63277 55 0 4 7 0 1 403 2 0 55 chain 45095 chr5 180915260 + 55295765 55296292 LTR6B 557 - 1 557 62941 55 0 1 6 0 1 133 0 1 293 1 27 39 chain 9235 chr5 180915260 + 55296342 55296450 U13_ 108 - 0 108 164374 108 chain 3362 chr5 180915260 + 55308477 55308521 MIR 256 - 109 153 217800 44 chain 179066 chr5 180915260 + 55309753 55311848 SVA_D 2077 - 4 2077 21066 636 0 49 48 1 0 269 32 0 33 0 2 78 55 15 25 2 0 15 2 0 864 0 5 12 1 0 22 chain 1956 chr5 180915260 + 55310709 55310739 SVA_D 2077 - 654 703 84247 5 3 20 4 0 1 4 0 1 14 chain 3455 chr5 180915260 + 55310852 55310905 SVA_D 2077 - 767 820 84247 53 chain 101979 chr5 180915260 + 55331132 55332421 LTR12C 1709 + 0 1709 36271 104 6 4 684 1 319 6 2 0 107 0 4 212 0 1 19 47 17 42 0 131 59 chain 107761 chr5 180915260 + 55334097 55335292 SVA_D 2077 - 21 1895 34789 94 0 7 413 0 225 232 0 51 50 0 83 30 0 313 376 chain 11746 chr5 180915260 + 55335292 55335415 SVA_D 2077 - 1923 2046 153273 123 chain 28449 chr5 180915260 + 55347457 55347755 AluYa5 310 - 12 310 91375 298 chain 13661 chr5 180915260 + 55347819 55348045 MSTC 436 - 87 391 145738 8 0 23 60 0 17 18 3 6 27 22 23 28 0 34 60 chain 46998 chr5 180915260 + 55355609 55356537 PRIMA4_LTR 623 + 0 623 61212 91 2 1 140 1 2 10 12 14 5 1 0 47 1 0 23 305 0 19 1 0 37 2 4 179 1 0 51 chain 10753 chr5 180915260 + 55373992 55374116 AluSp 311 - 17 141 157188 124 chain 23174 chr5 180915260 + 55381858 55382169 AluY 311 + 5 303 114787 15 1 3 50 1 0 5 10 2 53 10 0 135 0 4 31 chain 4409 chr5 180915260 + 55405175 55405227 Charlie8 480 - 327 379 201828 52 chain 23208 chr5 180915260 + 55415868 55416145 AluSc5 308 - 15 300 114649 225 0 8 52 chain 19733 chr5 180915260 + 55428178 55428438 AluY 311 + 53 304 128002 73 10 0 150 5 6 22 chain 80708 chr5 180915260 + 55452823 55453794 LTR5_Hs 974 + 0 974 43303 458 0 4 314 7 7 128 1 0 63 chain 22479 chr5 180915260 + 55470417 55470680 AluSc 308 + 39 302 118113 263 chain 63558 chr5 180915260 + 55482992 55483750 LTR17 781 + 0 781 51213 327 1 0 248 0 1 134 2 24 39 0 1 7 chain 25630 chr5 180915260 + 55495445 55495731 AluY 311 + 10 296 101581 286 chain 71779 chr5 180915260 + 55499176 55500000 L1PA4 6152 - 1 844 47573 146 0 14 33 2 0 471 3 8 105 0 2 64 chain 4035 chr5 180915260 + 55513109 55513158 Tigger1 2417 - 1083 1132 206858 49 chain 535611 chr5 180915260 + 55517193 55523325 L1PA5 6144 + 0 6144 3499 1169 9 0 86 0 1 1011 0 13 145 0 4 818 0 5 1283 0 3 616 3 0 16 3 1 973 chain 38396 chr5 180915260 + 55537305 55537833 THE1D-int 1627 + 12 542 71578 200 8 9 172 18 18 39 1 2 90 chain 11701 chr5 180915260 + 55539622 55539841 THE1D 372 + 150 372 153464 16 46 48 10 1 0 55 10 12 81 chain 45521 chr5 180915260 + 55544626 55545308 LTR12_ 688 - 0 688 62485 22 0 3 195 5 31 140 60 61 93 24 0 143 chain 104013 chr5 180915260 + 55553509 55554710 SVA_B 1603 - 0 1601 35731 6 3 0 514 0 398 654 7 12 17 chain 6011 chr5 180915260 + 55556194 55556267 5S 121 - 42 115 185122 73 chain 19586 chr5 180915260 + 55562790 55563047 L1PA16 3655 - 658 916 128415 43 0 3 29 1 0 18 1 0 165 chain 54019 chr5 180915260 + 55564386 55565049 L1PA7 6471 - 4 664 56348 8 0 4 148 2 0 80 3 2 125 12 8 285 chain 27448 chr5 180915260 + 55577384 55577739 THE1A 353 - 0 353 94824 155 1 0 87 1 0 111 chain 11774 chr5 180915260 + 55583073 55583241 MER50 708 + 0 169 153158 46 0 1 4 5 4 36 5 6 72 chain 77218 chr5 180915260 + 55588569 55589446 L1PA5 6144 - 12 894 44858 126 0 7 616 1 0 89 1 0 44 chain 134745 chr5 180915260 + 55590997 55592576 LTR12C 1709 + 0 1709 27066 252 0 15 19 0 13 386 1 0 152 1 0 275 1 0 36 1 0 76 0 4 212 0 102 167 chain 33570 chr5 180915260 + 55593025 55593391 L1PA3long 6157 - 1 367 78288 366 chain 8602 chr5 180915260 + 55630274 55630388 MSTA-int 1630 - 0 115 167721 78 1 2 35 chain 5545 chr5 180915260 + 55633583 55633783 MLT1C 463 - 42 240 189613 44 110 109 38 1 0 7 chain 4095 chr5 180915260 + 55638182 55638228 MER58A 224 + 42 88 206014 46 chain 141570 chr5 180915260 + 55667732 55669318 SVA_D 2077 + 6 2077 25889 203 1 0 515 0 3 34 3 0 141 0 487 670 1 0 18 chain 3025 chr5 180915260 + 55669772 55670274 L1MB2 1706 - 868 1370 224465 9 12 0 9 0 1 14 104 91 9 0 15 15 303 312 27 chain 211422 chr5 180915260 + 55687258 55690347 L1PA14 3548 + 90 3440 18404 59 5 0 32 7 17 17 6 5 17 2 1 23 11 7 31 2 0 20 5 9 117 0 1 265 0 3 429 2 11 290 6 4 10 15 17 20 0 2 6 1 0 6 2 6 199 7 279 95 2 0 78 0 1 6 5 3 23 0 1 41 3 0 169 0 1 124 9 8 32 5 6 100 0 1 4 2 0 61 0 1 4 1 0 186 3 1 9 8 5 39 8 6 7 2 0 106 41 34 71 6 5 17 6 7 63 0 1 23 14 9 38 4 2 12 5 3 18 1 0 26 chain 125496 chr5 180915260 + 55693047 55694468 SVA_B 1603 - 12 1553 29242 587 0 78 34 0 40 659 0 1 119 0 1 22 chain 31664 chr5 180915260 + 55712029 55712477 MLT2A1 477 - 0 477 81383 44 1 0 9 3 39 61 1 0 144 21 15 14 8 9 142 chain 45996 chr5 180915260 + 55732874 55733645 L1PB1 5432 + 4664 5422 62045 130 0 8 84 0 3 224 1 0 14 8 7 9 1 0 13 2 0 3 2 0 9 13 11 41 18 16 45 2 1 14 2 0 6 39 34 10 2 0 24 1 0 21 1 0 13 1 0 18 chain 20306 chr5 180915260 + 55771245 55771509 L1PA4 6152 + 5850 6143 126221 41 1 0 12 10 40 200 chain 20103 chr5 180915260 + 55773114 55773363 AluSc8 310 + 49 301 126820 83 0 3 166 chain 3344 chr5 180915260 + 55784147 55784187 LTR12C 1709 + 837 877 218156 40 chain 11717 chr5 180915260 + 55794261 55794397 LTR12C 1709 - 641 777 153395 136 chain 16523 chr5 180915260 + 55824968 55825314 L1PB1 5432 + 5105 5418 136849 9 1 0 24 27 21 9 2 0 52 2 1 15 1 0 41 34 20 30 2 0 5 1 0 14 3 1 23 1 0 21 1 0 7 7 6 14 chain 3207 chr5 180915260 + 55829075 55829110 MER3 215 + 55 90 220767 35 chain 4258 chr5 180915260 + 55831339 55831391 MLT1D 503 - 410 462 203767 52 chain 25325 chr5 180915260 + 55838645 55838910 AluYa5 310 - 6 271 103098 265 chain 22353 chr5 180915260 + 55889186 55889461 AluSp 311 + 11 284 118687 121 2 0 152 chain 11596 chr5 180915260 + 55894348 55894496 Tigger1 2417 - 1390 1539 153909 130 6 7 12 chain 29803 chr5 180915260 + 55907273 55907645 L1MA2 4263 + 2767 3140 85424 137 8 9 227 chain 28558 chr5 180915260 + 55913902 55914320 MER51E 476 - 0 467 90926 19 10 0 9 6 42 102 8 0 39 8 4 95 0 35 122 chain 12480 chr5 180915260 + 55922972 55923628 L1PA14 3548 - 92 733 47118 15 1 12 15 2 1 17 24 20 35 11 1 8 1 0 10 11 7 20 0 15 26 0 3 6 21 8 16 1 0 84 1 0 5 26 22 104 9 5 48 2 0 12 5 9 6 6 0 11 2 5 95 chain 23023 chr5 180915260 + 55923633 55924010 THE1B 368 + 0 368 115521 15 2 0 30 6 7 55 15 16 46 32 24 101 1 0 74 chain 123432 chr5 180915260 + 55924010 55925579 THE1B-int 1605 + 0 1600 29904 113 0 3 294 2 1 6 0 1 7 1 26 27 0 3 5 1 0 524 0 13 12 11 0 305 1 0 260 chain 22468 chr5 180915260 + 55925584 55925961 THE1B 368 + 0 368 118161 15 2 0 32 0 1 63 0 3 5 2 0 12 70 62 100 1 0 75 chain 15961 chr5 180915260 + 55925961 55926800 L1PA14 3548 - 733 2576 47118 132 244 1252 118 0 1 190 14 9 141 chain 9886 chr5 180915260 + 55948525 55948655 MER47A 366 + 145 302 161153 95 0 27 35 chain 5277 chr5 180915260 + 55963464 55963567 L1PB1 5432 - 28 124 192236 10 3 2 22 1 0 24 2 0 14 1 0 4 4 2 18 chain 5240 chr5 180915260 + 55992042 55992120 MADE1 96 - 1 96 192620 35 5 22 38 chain 28663 chr5 180915260 + 56004257 56004557 AluYb8 318 + 15 315 90478 300 chain 26832 chr5 180915260 + 56020104 56020423 L1PA6 6164 - 10 330 96864 307 0 1 12 chain 31761 chr5 180915260 + 56020842 56021197 L1PA7 6471 + 6084 6439 81228 355 chain 83873 chr5 180915260 + 56026859 56027839 L1PA6 6164 + 5183 6161 41958 129 0 4 137 6 0 708 chain 3617 chr5 180915260 + 56036473 56036519 L1MB4 1306 + 622 668 213389 46 chain 63955 chr5 180915260 + 56039142 56039911 L1PA7 6471 + 5698 6464 51026 108 0 1 6 1 0 596 4 0 16 0 1 38 chain 45000 chr5 180915260 + 56049408 56049905 L1PA4 6152 + 5655 6152 63059 497 chain 528081 chr5 180915260 + 56072150 56078262 L1PA5 6144 - 12 6144 4395 156 3 5 677 1 0 181 0 1 2806 16 0 205 0 3 26 0 9 868 3 0 5 0 3 17 9 0 406 11 12 586 0 12 11 0 18 125 chain 22157 chr5 180915260 + 56085458 56085719 L1PB1 5432 + 4834 5095 119559 261 chain 24779 chr5 180915260 + 56087807 56088097 AluSp 311 - 13 301 106002 166 2 0 122 chain 61746 chr5 180915260 + 56095356 56096047 L1P1 4361 + 3395 4085 52015 288 1 0 402 chain 5642 chr5 180915260 + 56159068 56159136 MER57D 437 + 369 437 188640 68 chain 4199 chr5 180915260 + 56165958 56166004 MADE1 96 - 50 96 204550 46 chain 13560 chr5 180915260 + 56174088 56174284 L1PA7 6471 + 6269 6465 146129 44 12 13 122 0 1 10 2 0 6 chain 3799 chr5 180915260 + 56174667 56174737 L1MC4 1079 - 773 844 210401 5 1 0 33 9 11 22 chain 6232 chr5 180915260 + 56188154 56188241 L1P1 4361 - 20 105 183298 12 2 1 23 1 0 49 chain 8818 chr5 180915260 + 56269047 56269160 L1MB8 1703 + 1475 1588 166563 113 chain 18605 chr5 180915260 + 56278251 56278609 THE1D 372 + 0 372 131210 47 3 0 27 4 5 58 13 14 15 69 84 122 chain 11633 chr5 180915260 + 56299429 56299672 L1PB1 5432 + 5168 5392 153760 52 2 1 16 1 0 44 1 0 15 1 0 6 16 7 17 29 24 19 5 4 19 chain 56303 chr5 180915260 + 56310715 56311460 LTR17 781 - 24 781 54961 38 2 24 142 4 0 23 1 0 203 1 0 94 1 0 52 4 3 22 1 0 97 1 0 59 chain 3777 chr5 180915260 + 56311557 56311600 MLT1D 503 + 439 482 210706 43 chain 27648 chr5 180915260 + 56312288 56312734 LTR7B 505 - 10 505 94215 15 2 0 5 0 1 20 14 13 84 5 46 59 36 23 27 18 31 56 0 10 105 chain 50400 chr5 180915260 + 56314669 56315309 HERVH-int 3825 - 0 639 58715 565 18 17 57 chain 25170 chr5 180915260 + 56317903 56318281 LTR7B 505 - 9 505 103906 23 2 3 13 17 16 88 1 42 22 1 0 31 0 1 5 14 81 56 0 10 105 chain 22902 chr5 180915260 + 56337104 56337393 AluY 311 + 0 302 116096 66 1 9 48 0 7 16 4 3 127 2 1 25 chain 5981 chr5 180915260 + 56352600 56352683 MER1A 529 + 436 520 185419 21 4 5 58 chain 38885 chr5 180915260 + 56365089 56365609 LTR10A 586 - 14 563 70887 8 1 0 161 2 1 6 0 1 187 5 6 61 1 0 17 2 23 26 0 1 7 0 8 36 chain 66131 chr5 180915260 + 56383550 56384322 L1PA7 6471 + 5699 6469 50034 760 2 0 10 chain 7016 chr5 180915260 + 56386430 56386514 Tigger1 2417 + 1501 1585 177358 84 chain 378857 chr5 180915260 + 56391480 56398011 L1PB1 5432 + 19 4801 10794 382 1 0 11 1 0 44 1 2 493 0 1 593 15 37 272 550 0 80 9 1 559 1 0 90 0 1 247 600 18 79 14 8 663 330 0 596 0 2 418 332 18 46 0 3 22 0 2 9 1 13 72 chain 3742 chr5 180915260 + 56414897 56414941 MER57C2 434 - 64 108 211307 44 chain 24242 chr5 180915260 + 56419857 56420211 THE1B 368 - 0 368 108981 61 2 0 14 1 0 99 28 31 76 1 0 28 0 15 44 chain 24996 chr5 180915260 + 56442667 56442969 AluSp 311 - 9 310 104812 170 1 0 131 chain 5286 chr5 180915260 + 56444663 56444730 MSTA 426 + 359 426 192147 67 chain 5288 chr5 180915260 + 56445125 56445192 MSTA 426 + 359 426 192133 67 chain 4707 chr5 180915260 + 56450434 56450499 LTR54 533 - 0 65 198418 42 0 1 9 1 0 13 chain 24812 chr5 180915260 + 56452503 56452794 AluSp 311 + 10 301 105825 291 chain 42459 chr5 180915260 + 56460838 56461305 L1PA5 6144 + 5417 5884 66060 467 chain 8130 chr5 180915260 + 56464936 56465036 HY3 101 - 1 101 170329 100 chain 4454 chr5 180915260 + 56504018 56504068 LTR1 825 - 761 811 201297 50 chain 21933 chr5 180915260 + 56513125 56513402 AluSp 311 + 8 286 120484 150 0 1 46 0 1 6 2 1 73 chain 44965 chr5 180915260 + 56528093 56528695 LTR10C 591 + 0 591 63098 23 0 3 5 2 0 207 0 3 70 0 3 21 20 0 175 0 2 79 chain 5838 chr5 180915260 + 56531257 56531323 MER41B 635 - 88 154 186789 66 chain 23081 chr5 180915260 + 56534121 56534391 AluSp 311 + 10 288 115231 63 0 8 207 chain 22081 chr5 180915260 + 56536517 56536799 AluSp 311 + 0 296 119881 15 2 0 175 0 22 70 6 0 14 chain 26531 chr5 180915260 + 56544246 56544549 AluYa5 310 - 3 299 97929 153 10 4 18 1 0 121 chain 18254 chr5 180915260 + 56577945 56578634 MSTA 426 + 13 426 132188 86 8 14 12 413 112 42 0 1 15 0 20 28 9 7 76 chain 126049 chr5 180915260 + 56581947 56584407 L1MA2 4263 + 141 1959 29079 18 1 0 3 6 0 30 0 3 50 7 6 82 4 7 11 4 0 131 9 4 72 0 1 85 14 15 372 654 33 39 0 3 57 0 1 78 48 30 26 2 0 67 0 1 90 0 3 20 0 4 35 1 2 19 5 0 420 chain 28312 chr5 180915260 + 56597833 56598209 THE1C 375 - 0 375 91895 25 1 0 119 4 7 38 1 0 85 3 1 100 chain 4270 chr5 180915260 + 56599754 56599846 MER50 708 + 513 595 203623 24 1 0 7 27 18 33 chain 97689 chr5 180915260 + 56604407 56605626 THE1A-int 1579 + 0 1237 37372 289 0 7 33 0 1 235 5 15 657 chain 4926 chr5 180915260 + 56605626 56605686 THE1A 353 + 293 353 194178 60 chain 3336 chr5 180915260 + 56606961 56607003 MSTC 436 + 382 425 218297 30 0 1 12 chain 27345 chr5 180915260 + 56617917 56618230 L1PA4 6152 - 9 322 95124 313 chain 35791 chr5 180915260 + 56646097 56646549 MER41A 554 - 86 539 75147 329 0 1 123 chain 548509 chr5 180915260 + 56647343 56653353 L1PA2 6032 - 20 6032 1641 1550 0 1 539 1 2 103 0 1 1625 1 0 1935 1 0 182 1 2 72 chain 100609 chr5 180915260 + 56666931 56668385 L1PB1 5432 - 2 1418 36601 8 2 0 18 7 6 7 1 0 21 1 0 26 23 18 12 9 0 13 3 0 19 1 0 46 1 0 14 7 6 48 2 0 9 6 2 13 2 1 5 1 0 24 5 0 7 1 4 243 6 8 204 9 4 16 3 0 290 3 4 127 0 2 191 chain 73304 chr5 180915260 + 56668627 56669567 L1PB 1623 + 546 1481 46881 710 6 0 50 6 1 80 0 8 51 1 0 7 2 1 27 chain 160443 chr5 180915260 + 56673503 56675243 L1PA3long 6157 - 1395 3135 23281 1740 chain 123411 chr5 180915260 + 56675243 56676619 L1PA3long 6157 + 4752 6129 29845 629 1 2 746 chain 33257 chr5 180915260 + 56676653 56677031 L1PA4 6152 + 5771 6152 78791 365 0 3 13 chain 20594 chr5 180915260 + 56722825 56723132 THE1B 368 + 0 307 125319 107 4 0 62 1 0 11 12 16 4 1 0 9 0 4 19 1 0 7 5 4 64 chain 8984 chr5 180915260 + 56740486 56740599 MER20 218 - 6 119 165693 113 chain 120843 chr5 180915260 + 56755740 56757110 L1PA4 6152 - 11 1383 30743 102 0 1 417 0 1 851 chain 369741 chr5 180915260 + 56767432 56771422 L1PA2 6032 - 18 4008 11105 3990 chain 12377 chr5 180915260 + 56771422 56771559 L1HS 6032 + 1919 2056 150386 137 chain 24137 chr5 180915260 + 56793005 56793309 AluY 311 + 20 308 109537 106 16 0 182 chain 104880 chr5 180915260 + 56813728 56815025 SVA_A 1864 - 0 1846 35534 532 0 629 60 40 0 21 40 0 604 chain 27240 chr5 180915260 + 56815849 56816172 LTR17 781 - 457 781 95462 100 1 2 222 chain 70491 chr5 180915260 + 56817881 56818716 HERV17-int 4347 - 955 1795 48170 89 0 5 157 1 0 438 1 2 149 chain 17130 chr5 180915260 + 56826823 56827023 L1PA6 6164 + 5944 6152 135230 64 0 8 136 chain 436711 chr5 180915260 + 56839550 56846329 L1PA8A 6298 - 17 6040 9142 92 1 0 4 4 0 406 8 12 173 0 7 97 2 1 321 0 1 290 0 2 56 1 0 140 0 5 17 0 7 198 3 4 7 1 0 44 0 4 231 1 0 56 1 0 120 5 18 88 0 5 9 14 8 154 12 0 285 14 14 52 1034 0 90 0 1 158 0 278 315 12 0 874 1 0 66 0 1 197 8 9 132 4 2 85 9 13 28 5 1 297 4 0 154 8 9 132 6 5 60 4 14 10 6 5 13 2 0 32 3 0 5 1 4 35 41 31 31 2 0 8 chain 86149 chr5 180915260 + 56842463 56843491 LTR5A 1029 + 0 1029 41095 95 2 1 51 1 0 251 7 8 361 4 0 104 1 7 151 chain 2838 chr5 180915260 + 56850852 56850882 MLT1B 390 + 360 390 228106 30 chain 11012 chr5 180915260 + 56851426 56851555 L1PA6 6164 - 5 134 156156 129 chain 21102 chr5 180915260 + 56853210 56853582 MSTA 426 + 0 426 123545 110 12 41 16 0 12 27 4 0 10 0 2 22 2 0 13 12 10 37 1 0 5 27 47 74 chain 99077 chr5 180915260 + 56883571 56884679 L1PA5 6144 + 5033 6141 37005 1108 chain 18566 chr5 180915260 + 56890469 56890741 L1PA8 5853 + 5589 5853 131317 19 2 0 68 3 0 3 1 0 9 1 0 11 1 2 35 6 5 19 1 0 93 chain 25056 chr5 180915260 + 56906077 56906376 AluSp 311 - 17 311 104524 6 5 0 288 chain 2607 chr5 180915260 + 56920658 56920690 MER53 195 + 40 73 231591 27 0 1 5 chain 106790 chr5 180915260 + 56926417 56927631 L1PA4 6152 - 16 1233 35035 127 0 1 834 7 8 224 0 1 22 chain 6075 chr5 180915260 + 56938731 56938811 MADE1 96 + 0 96 184611 46 1 17 33 chain 8163 chr5 180915260 + 56943763 56943903 MER30 238 + 116 238 170158 7 13 0 6 3 0 63 4 1 35 0 1 9 chain 14094 chr5 180915260 + 56959800 56960012 L1PA8 5853 - 0 206 144240 48 5 3 41 2 1 19 2 1 52 1 0 9 1 0 32 chain 45675 chr5 180915260 + 57031153 57031705 MER41A 554 + 0 554 62335 83 0 1 94 0 1 375 chain 2829 chr5 180915260 + 57038384 57038414 L1PA16 3655 - 118 148 228255 30 chain 38074 chr5 180915260 + 57046263 57046935 LTR1 825 - 50 781 72025 32 0 8 158 11 13 130 19 32 19 6 5 33 5 6 26 0 8 20 32 21 15 43 86 42 11 7 70 chain 8232 chr5 180915260 + 57060928 57061204 MLT1A0 366 - 0 279 169768 53 92 93 21 60 62 50 chain 74823 chr5 180915260 + 57106174 57107011 L1PA4 6152 + 5302 6140 46100 736 0 1 101 chain 22584 chr5 180915260 + 57115225 57115488 AluY 311 + 38 302 117658 94 0 1 169 chain 493905 chr5 180915260 + 57161200 57166703 L1PA3long 6157 - 10 6147 7178 1119 0 1 991 0 1 851 0 1 1057 0 505 473 3 0 244 0 128 623 0 1 142 chain 9135 chr5 180915260 + 57195128 57195851 MLT1A 405 + 0 375 164885 32 0 1 19 30 31 14 8 0 19 522 179 18 5 6 56 chain 8023 chr5 180915260 + 57213064 57213234 L1MA5A 2387 - 12 158 170925 16 2 0 19 1 0 11 1 0 12 37 18 4 1 0 66 chain 525797 chr5 180915260 + 57218688 57224807 L1PA5 6144 + 0 6144 4602 826 2 0 1220 10 6 141 0 2 89 0 1 35 5 6 941 0 4 620 0 6 126 0 1 320 0 4 280 1 0 141 0 16 141 0 1 787 5 0 279 1 2 149 chain 24520 chr5 180915260 + 57231264 57231555 AluYc3 301 - 17 301 107441 41 8 0 128 1 2 113 chain 19965 chr5 180915260 + 57238014 57238233 L1PA3long 6157 - 180 399 127258 219 chain 13850 chr5 180915260 + 57238233 57238381 L1PA3long 6157 + 6009 6157 145068 148 chain 280586 chr5 180915260 + 57239172 57242396 L1PA5 6144 - 0 3223 14612 146 7 0 696 0 1 375 0 1 904 1 0 338 2 1 82 0 1 332 0 6 91 1 0 249 chain 3416 chr5 180915260 + 57242397 57242434 L1P2 5180 - 5139 5176 216823 37 chain 45846 chr5 180915260 + 57257188 57257796 L1PA11 4918 - 554 1153 62183 26 15 7 175 1 0 89 1 2 92 2 1 207 chain 536319 chr5 180915260 + 57262412 57268576 L1PA4 6152 - 1 6149 3408 608 37 0 285 1 0 1750 0 1 128 0 8 205 0 1 1186 9 12 156 0 1 574 1 0 72 0 3 88 0 1 408 1 2 38 0 1 219 0 2 153 0 1 245 chain 5834 chr5 180915260 + 57271720 57271790 MLT1A 405 + 271 341 186822 70 chain 6659 chr5 180915260 + 57281716 57281790 L1PA3long 6157 + 6071 6145 180014 74 chain 34286 chr5 180915260 + 57289103 57289564 L1PA8 5853 - 0 456 77231 93 1 0 19 2 1 39 32 30 63 2 0 115 0 1 95 chain 253886 chr5 180915260 + 57292679 57295941 L1P2 5180 + 1951 5178 16037 376 33 15 20 0 1 184 12 5 86 0 1 4 1 0 598 6 7 267 4 0 321 20 5 519 0 4 20 0 1 255 4 3 54 0 4 180 0 2 204 1 0 49 1 0 38 1 0 4 chain 79968 chr5 180915260 + 57296080 57297073 L1PA7 6471 + 5464 6454 43612 43 0 3 110 1 4 78 3 1 259 0 1 395 8 0 96 chain 5522 chr5 180915260 + 57303165 57303257 MLT1C 463 + 64 148 189818 60 16 8 16 chain 5462 chr5 180915260 + 57343220 57343748 MER34A1 583 - 11 573 190397 17 1 0 6 125 125 29 297 331 6 0 1 47 chain 53356 chr5 180915260 + 57348894 57349512 L1P1 4361 - 20 635 56799 12 2 1 23 1 0 154 1 0 425 chain 18166 chr5 180915260 + 57364652 57364876 LTR12C 1709 - 713 936 132419 159 1 0 64 chain 452396 chr5 180915260 + 57395960 57401508 L1PA7 6471 - 15 5550 8679 166 6 3 569 0 1 12 4 5 79 1 0 323 7 0 8 0 7 605 0 4 668 30 8 315 0 1 59 7 4 41 0 1 80 1 0 254 4 0 6 0 4 68 3 4 4 1 0 81 0 1 1226 1 2 123 0 5 168 0 1 280 0 1 348 chain 4144 chr5 180915260 + 57408318 57408420 MER20 218 - 83 184 205325 21 41 40 40 chain 194959 chr5 180915260 + 57448097 57451154 L1PB1 5432 + 2738 5420 19586 104 6 0 62 7 8 6 1 0 88 5 2 207 320 1 520 1 5 39 0 1 35 0 3 98 0 1 44 0 1 398 0 1 89 46 47 107 31 28 178 1 4 176 0 3 78 27 0 31 3 2 9 3 0 24 37 29 52 7 6 12 1 0 43 1 0 16 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 6 5 8 1 0 16 chain 78444 chr5 180915260 + 57457597 57458605 L1P3 4156 - 3142 4156 44296 20 17 18 12 1 4 191 0 5 52 0 1 29 10 7 68 2 0 90 0 1 114 0 1 79 1 0 71 1 0 97 0 1 153 chain 53315 chr5 180915260 + 57464539 57465195 L1PA8A 6298 - 7 664 56821 100 18 19 538 chain 116414 chr5 180915260 + 57489080 57490403 L1PA4 6152 + 4822 6139 32308 478 0 1 322 1 0 373 7 1 142 chain 535763 chr5 180915260 + 57511742 57517863 L1PA4 6152 + 6 6151 3485 422 0 1 150 0 1 815 0 9 916 1 0 7 4 0 514 0 1 935 1 2 526 1 0 46 0 4 212 0 1 127 1 9 596 0 1 322 1 0 55 0 4 316 7 0 8 0 7 138 chain 54065 chr5 180915260 + 57518068 57518682 L1PA5 6144 + 5519 6132 56311 512 1 0 101 chain 32286 chr5 180915260 + 57550390 57550766 L1P1 4361 - 3383 3759 80386 376 chain 534591 chr5 180915260 + 57583897 57589991 L1PA3long 6157 + 19 6156 3643 133 13 14 155 0 2 108 1 0 350 0 128 726 0 1 1934 108 15 769 0 4 948 0 1 849 chain 6045 chr5 180915260 + 57587324 57587389 L1PA3long 6157 + 1570 1635 184854 65 chain 3114 chr5 180915260 + 57587389 57587425 L1PA3long 6157 + 1636 1672 217633 36 chain 103661 chr5 180915260 + 57603521 57604761 L1PA5 6144 + 4927 6137 35812 856 1 0 3 30 0 24 0 1 326 chain 28454 chr5 180915260 + 57632197 57632495 AluYb8 318 + 20 318 91360 298 chain 18819 chr5 180915260 + 57649063 57649298 AluSg7 307 - 20 254 130616 154 2 1 79 chain 20825 chr5 180915260 + 57663071 57663420 THE1B 368 - 0 350 124521 56 7 6 87 1 0 5 39 37 6 0 4 32 17 15 6 0 3 93 chain 537972 chr5 180915260 + 57667408 57673827 L1PA4 6152 - 1 6145 3153 603 0 1 1903 0 1 115 7 0 820 0 5 452 6 11 863 0 1 123 291 6 248 0 1 248 6 9 734 chain 24502 chr5 180915260 + 57672309 57672591 AluYd8 298 - 16 298 107536 176 3 0 31 0 3 72 chain 28292 chr5 180915260 + 57674023 57674326 AluYk11 308 - 5 308 91975 303 chain 568042 chr5 180915260 + 57680001 57686033 L1HS 6032 + 0 6032 23 6032 chain 5694 chr5 180915260 + 57730141 57730321 MLT1A1 405 + 186 363 188170 24 89 87 50 0 1 4 2 0 11 chain 44604 chr5 180915260 + 57741676 57742281 LTR12 884 - 15 884 63477 113 5 13 12 27 130 201 0 22 24 0 132 198 1 0 24 chain 84372 chr5 180915260 + 57759521 57760520 L1PA7 6471 + 5459 6466 41765 163 0 2 76 0 2 61 0 1 116 0 3 583 chain 36174 chr5 180915260 + 57763089 57763723 MER4A 717 + 6 713 74672 120 14 0 134 11 23 36 6 22 26 0 1 108 113 172 61 1 0 4 chain 45927 chr5 180915260 + 57804663 57805345 L1PB3 3668 + 2907 3563 62107 80 2 0 19 4 0 75 3 5 127 13 13 62 1 0 103 1 0 87 21 5 14 9 7 24 3 1 34 chain 25142 chr5 180915260 + 57808584 57808917 THE1A 353 + 0 329 104054 109 5 4 89 1 0 77 2 0 50 chain 65776 chr5 180915260 + 57809238 57810190 MER11A 1151 + 2 1143 50205 53 0 99 135 8 5 94 0 1 39 14 16 90 12 13 12 1 0 123 6 9 51 1 5 49 5 7 17 1 83 182 7 6 52 chain 325932 chr5 180915260 + 57811956 57816698 L1PA11 4918 + 6 4629 12345 36 8 6 11 0 3 5 18 12 33 0 1 4 2 0 13 2 0 51 1 0 18 19 17 124 5 6 186 13 7 388 9 10 50 2 5 38 1 0 4 0 1 7 6 1 164 0 1 4 1 0 282 0 15 216 6 6 81 1 2 88 0 26 280 0 1 51 3 7 162 0 1 12 74 55 43 111 0 175 4 1 4 0 1 515 0 4 321 7 8 81 0 1 138 22 0 9 19 41 546 0 10 11 1 0 68 2 0 14 1 0 20 4 0 9 35 26 11 1 0 13 2 0 11 47 33 18 chain 32464 chr5 180915260 + 57826047 57826519 MER4A1 472 - 0 472 80087 126 0 2 69 8 28 10 25 4 12 1 0 190 1 0 5 5 6 20 chain 548447 chr5 180915260 + 57831981 57838117 L1PA3long 6157 - 0 6157 1647 2949 0 1 36 1 0 55 0 20 442 0 1 289 0 1 87 1 0 2276 chain 549874 chr5 180915260 + 57848096 57854110 L1PA2 6032 - 2 6032 1462 339 0 1 503 0 4 669 2 1 1951 1 0 276 0 1 65 0 2 1476 0 1 143 0 1 107 0 8 482 chain 153714 chr5 180915260 + 57858323 57860988 SVA_A 1864 - 3 1849 24125 618 42 0 99 77 0 46 2 0 48 39 0 66 115 0 41 3 0 30 228 0 28 1 0 113 3 0 7 112 0 75 194 0 65 3 0 610 chain 3743 chr5 180915260 + 57859082 57859159 SVA_A 1864 - 1201 1276 136198 47 2 0 28 chain 5290 chr5 180915260 + 57859360 57859469 SVA_A 1864 - 769 839 70644 15 40 1 54 chain 3189 chr5 180915260 + 57859555 57859622 SVA_A 1864 - 954 986 117523 23 35 0 9 chain 3737 chr5 180915260 + 57859622 57859699 SVA_A 1864 - 839 914 70644 38 2 0 37 chain 1305 chr5 180915260 + 57859699 57859728 SVA_A 1864 - 1098 1127 79587 29 chain 2686 chr5 180915260 + 57859728 57859775 SVA_A 1864 - 719 766 73321 47 chain 5436 chr5 180915260 + 57859929 57860041 SVA_A 1864 - 1062 1172 70644 2 4 3 34 0 2 62 3 0 7 chain 3250 chr5 180915260 + 57860142 57860194 SVA_A 1864 - 1011 1060 220007 12 3 0 37 chain 6571 chr5 180915260 + 57860195 57860310 SVA_A 1864 - 1060 1137 73321 34 3 5 24 40 0 14 chain 545935 chr5 180915260 + 57868620 57874767 L1PA4 6152 + 1 6152 1951 652 3 0 387 1 0 191 0 1 968 0 1 119 6 2 271 0 1 53 0 1 1041 2 0 246 0 1 1131 0 7 590 0 1 336 0 1 150 chain 284261 chr5 180915260 + 57897136 57901149 L1PBa1 4058 - 22 4048 14401 38 1 0 17 2 1 8 1 0 5 1 0 5 12 9 9 1 0 21 3 0 4 1 0 4 2 1 20 2 0 14 7 0 7 1 0 22 3 1 66 1 0 42 2 0 15 0 1 25 1 0 20 10 9 7 1 0 116 13 2 43 98 101 116 0 2 5 1 0 426 1 7 8 0 2 172 0 5 98 3 0 73 4 47 546 0 3 88 0 4 139 1 0 17 0 4 189 0 1 111 1 0 5 2 0 417 3 0 5 4 0 12 14 18 93 5 11 108 9 12 8 3 0 20 14 13 49 8 7 27 28 22 84 2 0 120 5 0 46 4 0 6 7 11 13 0 3 175 1 0 6 19 18 21 chain 189894 chr5 180915260 + 57901758 57904107 L1P2 5180 + 2 2339 20065 148 1 0 97 3 2 8 1 2 147 1 2 43 25 29 35 1 0 210 0 2 60 9 7 60 3 0 43 0 4 121 0 2 115 0 2 780 19 0 405 1 0 13 chain 75828 chr5 180915260 + 57904107 57905023 L1PA6 6164 + 5254 6162 45484 26 11 0 32 0 4 585 2 0 234 0 1 26 chain 53217 chr5 180915260 + 57907862 57908772 L1PA13 3608 - 60 847 56881 12 4 1 14 6 0 3 1 0 21 7 1 4 3 0 18 7 6 20 2 0 5 2 0 47 3 1 4 1 0 57 1 0 61 2 0 114 1 0 7 114 25 90 3 0 276 chain 14521 chr5 180915260 + 57923175 57923328 AluYb8 318 + 165 318 142823 153 chain 20371 chr5 180915260 + 57925343 57925833 MER89 557 - 1 508 125994 11 3 2 19 3 23 4 1 0 8 1 0 6 0 1 79 72 71 40 8 8 60 1 0 9 67 68 27 1 0 5 0 2 18 1 0 46 chain 21465 chr5 180915260 + 57948801 57949077 L1PA7 6471 - 5 275 122273 5 3 0 105 11 8 152 chain 38188 chr5 180915260 + 57949077 57949511 L1PA7 6471 + 5762 6196 71851 434 chain 27210 chr5 180915260 + 57951616 57951911 AluYc3 301 - 6 301 95565 295 chain 36257 chr5 180915260 + 57952606 57953195 L1PB1 5432 + 4860 5411 74552 243 1 2 9 3 0 24 1 0 9 10 7 5 2 0 8 2 0 53 2 1 16 1 0 44 1 0 15 14 1 15 6 2 13 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 7 chain 6795 chr5 180915260 + 57954168 57954247 L1P1 4361 - 90 169 178991 79 chain 14695 chr5 180915260 + 57979921 57980114 MER2 342 + 83 275 142279 31 7 6 155 chain 520572 chr5 180915260 + 57989766 57995925 L1PA6 6164 - 4 6164 5098 148 1 0 8 1 0 177 0 1 530 0 4 385 0 7 111 0 1 519 0 1 661 0 2 1279 0 1 86 0 1 27 0 2 211 4 0 473 0 1 705 17 0 252 1 0 32 16 18 275 7 9 233 chain 5017 chr5 180915260 + 58011746 58011800 L1PA2 6032 - 53 107 194951 54 chain 5983 chr5 180915260 + 58011800 58011869 L1PA2 6032 + 5963 6032 185403 69 chain 4208 chr5 180915260 + 58012651 58012800 L1MC1 2226 + 2069 2198 204442 13 6 1 20 3 1 19 53 41 20 1 0 14 chain 7122 chr5 180915260 + 58027926 58028010 L1PA2 6032 - 1 83 176603 12 2 0 70 chain 22235 chr5 180915260 + 58039239 58039564 L1PA8 5853 - 3 321 119188 90 1 0 57 2 0 24 2 1 70 13 11 31 7 6 28 chain 57111 chr5 180915260 + 58052261 58053011 L1PA8A 6298 - 11 697 54461 120 0 2 65 67 0 60 0 1 438 chain 29693 chr5 180915260 + 58073427 58073781 L1PA5 6144 - 0 358 85855 11 1 4 188 0 1 154 chain 41766 chr5 180915260 + 58119607 58120067 L1PA3long 6157 - 52 513 66947 95 1 2 364 chain 23856 chr5 180915260 + 58206429 58206827 THE1B 368 - 0 368 111149 174 5 7 12 4 3 34 18 0 10 36 20 66 0 5 22 2 0 15 chain 57937 chr5 180915260 + 58209081 58209862 MER4E1 777 + 0 777 54013 24 0 1 304 0 19 87 1 2 102 9 5 8 27 0 101 0 5 5 0 1 113 chain 63412 chr5 180915260 + 58211363 58212123 LTR17 781 + 0 774 51276 299 10 0 28 0 1 382 5 28 36 chain 45908 chr5 180915260 + 58224480 58225005 L1PA4 6152 + 5627 6152 62126 525 chain 515893 chr5 180915260 + 58248919 58255363 L1PA7 6471 - 10 6464 5584 121 1 0 137 0 4 67 0 1 461 0 1 51 11 13 72 0 2 508 5 4 146 8 0 51 0 4 140 0 4 114 1 2 134 3 5 7 2 0 407 11 5 111 0 3 150 4 0 183 0 4 52 31 25 235 0 3 110 0 1 78 1 0 285 9 0 126 0 2 111 0 2 117 1 5 534 2 0 89 3 7 409 10 9 85 1 7 6 6 0 97 5 7 151 7 6 128 5 8 35 1 0 37 2 1 374 1 3 133 0 2 253 0 1 8 chain 17156 chr5 180915260 + 58282268 58282542 MER1B 344 + 36 304 135149 45 20 17 118 4 0 46 23 24 18 chain 11927 chr5 180915260 + 58284800 58284990 MER20 218 - 0 182 152490 52 1 2 70 23 14 44 chain 4499 chr5 180915260 + 58290766 58290818 L1PA6 6164 - 173 225 200790 52 chain 2895 chr5 180915260 + 58290818 58290849 L1PA6 6164 + 6128 6159 221425 31 chain 33524 chr5 180915260 + 58291697 58292122 L1PA7 6471 + 6042 6469 78359 263 11 20 6 5 0 130 2 0 8 chain 479235 chr5 180915260 + 58306513 58312110 L1PA5 6144 + 0 6140 7755 89 0 525 555 7 1 223 9 0 128 1 2 410 0 2 863 11 15 357 1 0 172 0 6 327 1 0 674 0 4 138 7 27 109 0 1 1195 3 0 131 2 1 42 1 2 141 chain 21733 chr5 180915260 + 58328152 58328409 AluSc 308 + 26 284 121265 138 0 1 119 chain 68100 chr5 180915260 + 58339384 58340145 L1PA5 6144 - 3 761 49203 13 3 0 745 chain 28903 chr5 180915260 + 58352273 58352656 L1PA8 5853 - 0 377 89444 89 7 8 12 1 0 50 2 0 15 2 1 70 2 0 44 1 0 88 chain 13253 chr5 180915260 + 58362485 58362808 MLT1A0 366 + 0 325 147278 26 1 0 15 16 15 53 17 18 10 1 2 53 84 86 47 chain 31241 chr5 180915260 + 58514694 58515033 L1PA2 6032 + 5693 6032 82094 339 chain 30856 chr5 180915260 + 58546488 58547057 L1PA14 3548 + 2904 3453 82758 18 0 1 15 3 1 3 0 1 10 2 0 47 9 5 102 15 11 13 2 0 6 8 10 74 1 0 15 15 11 6 0 4 75 16 11 7 0 1 28 4 2 12 1 0 5 1 0 17 1 0 38 chain 5731 chr5 180915260 + 58580238 58580299 L1PA2 6032 - 752 813 187824 61 chain 69592 chr5 180915260 + 58580304 58581051 L1PA2 6032 + 5285 6032 48576 747 chain 325931 chr5 180915260 + 58598259 58604461 L1PB1 5432 - 41 4369 12346 21 1 0 24 2 0 14 8 5 19 19 8 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 13 1 0 16 24 16 296 3 1 47 2 0 137 3 0 38 4 5 32 1 0 48 17 16 124 1 2 67 0 1 60 11 10 497 4 1 826 0 3 35 18 17 175 0 1 139 0 1 15 10 1 8 4 0 89 7 9 27 0 1 274 0 1 104 0 12 363 0 1 204 30 19 40 1824 0 292 chain 163688 chr5 180915260 + 58602355 58604159 L1PA3long 6157 + 4315 6155 22849 1775 0 36 29 chain 36646 chr5 180915260 + 58621702 58622104 L1PA4 6152 + 5750 6152 74029 402 chain 3476 chr5 180915260 + 58622290 58622372 MER33 330 + 47 129 215713 33 30 30 19 chain 10238 chr5 180915260 + 58633163 58633280 AluYf4 310 - 16 133 159434 117 chain 28687 chr5 180915260 + 58687939 58688350 MLT2A1 477 + 9 413 90379 101 1 11 49 4 1 8 0 1 26 0 1 178 4 0 8 12 0 20 chain 542491 chr5 180915260 + 58690546 58696569 L1PA3long 6157 + 1 6157 2430 151 0 1 211 0 1 191 5 0 179 1 5 36 0 128 1560 0 3 1047 0 1 2642 chain 13718 chr5 180915260 + 58706421 58706647 L1MA3 4352 - 360 586 145545 28 0 5 60 1 0 33 34 30 70 chain 22630 chr5 180915260 + 58750057 58750416 THE1B 368 + 0 366 117424 41 0 1 61 1 0 16 36 36 17 5 4 130 5 13 47 chain 125155 chr5 180915260 + 58750418 58751992 THE1B-int 1605 + 0 1605 29342 430 1 26 134 0 1 91 1 0 142 0 1 290 8 10 251 0 3 226 chain 75661 chr5 180915260 + 58759611 58760580 LTR5_Hs 974 + 0 974 45682 169 1 0 120 0 1 177 0 1 188 1 0 163 47 52 103 chain 5795 chr5 180915260 + 58773130 58773192 L1HS 6032 + 5970 6032 187188 62 chain 2993 chr5 180915260 + 58811139 58811174 MER5A1 166 + 43 78 225194 35 chain 27292 chr5 180915260 + 58868296 58868605 AluYk4 311 - 2 311 95296 309 chain 26236 chr5 180915260 + 58924625 58924990 THE1C 375 - 0 368 99072 19 7 6 156 7 4 6 0 4 146 0 3 24 chain 513206 chr5 180915260 + 58927281 58933651 L1PA7 6471 + 6 6384 5864 392 0 3 47 0 2 16 0 1 544 0 1 173 0 10 431 1 0 126 2 1 58 0 1 701 6 8 68 1 0 42 0 1 9 0 2 507 0 1 30 7 6 297 0 1 6 1 0 5 2 1 48 1 5 54 4 0 421 1 0 256 0 5 334 0 1 4 1 0 49 0 4 340 30 8 496 0 4 28 0 2 61 1 4 66 5 4 12 0 1 262 2 0 171 6 2 245 chain 15522 chr5 180915260 + 58951394 58951595 MER107 203 - 8 201 139823 31 9 0 26 0 1 135 chain 395199 chr5 180915260 + 58983049 58987556 L1PA5 6144 + 1624 6144 10272 216 0 5 109 0 5 727 0 5 7 5 0 466 1 0 91 0 1 1093 0 4 275 1 0 769 1 0 273 0 1 473 chain 25884 chr5 180915260 + 59011906 59012254 LTR18A 364 + 0 364 100513 215 3 32 7 13 0 110 chain 46406 chr5 180915260 + 59044105 59044645 L1PA5 6144 + 5612 6140 61683 435 3 0 83 9 0 10 chain 13167 chr5 180915260 + 59059018 59059160 L1PA3long 6157 + 6015 6157 147591 142 chain 3886 chr5 180915260 + 59067693 59067737 MADE1 96 - 3 47 209077 44 chain 4249 chr5 180915260 + 59113687 59113739 MLT1B 390 + 295 347 203885 52 chain 17079 chr5 180915260 + 59193284 59193490 L1PA6 6164 - 3 209 135380 206 chain 6632 chr5 180915260 + 59202493 59202574 L1PA11 4918 + 4408 4487 180228 66 2 0 13 chain 26059 chr5 180915260 + 59216529 59216848 L1PA5 6144 + 5826 6140 99795 172 6 0 72 0 1 69 chain 28343 chr5 180915260 + 59231586 59231903 L1PA4 6152 - 302 619 91786 317 chain 25101 chr5 180915260 + 59231903 59232183 L1PA4 6152 + 5856 6136 104285 280 chain 104294 chr5 180915260 + 59266040 59267193 L1PA3long 6157 + 5002 6157 35670 328 1 2 820 0 1 4 chain 3528 chr5 180915260 + 59268421 59268462 MER110 477 + 86 127 214915 41 chain 87495 chr5 180915260 + 59313943 59315111 L1PA10 4194 + 1208 2386 40568 83 4 0 26 3 4 116 48 52 476 0 6 176 5 4 71 0 4 160 chain 4904 chr5 180915260 + 59324065 59324124 MER4A1 472 - 413 472 196242 59 chain 29539 chr5 180915260 + 59325995 59326310 AluYb8 318 + 0 315 86484 315 chain 51999 chr5 180915260 + 59333860 59334438 L1PA3long 6157 - 908 1501 57570 554 0 15 24 chain 89391 chr5 180915260 + 59334438 59335422 L1PA3long 6157 + 5171 6157 39845 653 0 2 331 chain 170191 chr5 180915260 + 59337331 59339484 L1P3 4156 + 0 2173 22026 251 1 0 68 6 5 76 5 1 295 1 11 173 0 2 456 3 0 5 0 3 44 0 3 451 1 2 296 1 11 20 chain 536858 chr5 180915260 + 59340202 59346216 L1PA3long 6157 - 9 6157 3331 813 1 4 690 2 0 208 1 0 1663 0 3 1863 0 128 455 0 2 164 1 2 153 chain 353223 chr5 180915260 + 59346220 59350515 L1PA7 6471 + 2163 6468 11521 472 1 0 66 1 0 134 2 0 290 0 4 400 4 1 267 0 1 206 4 6 945 1 0 514 1 6 59 1 0 4 0 2 81 8 7 74 0 1 322 13 14 62 5 7 28 0 1 180 3 4 147 chain 169158 chr5 180915260 + 59356665 59358903 L1PA8 5853 + 3600 5848 22157 54 0 1 685 1 0 131 0 3 61 1 15 308 0 5 146 2 0 23 3 4 58 7 6 80 3 0 384 1 0 43 12 10 62 1 0 23 2 0 38 2 1 12 8 7 20 22 23 45 chain 77666 chr5 180915260 + 59361268 59362153 L1PA3long 6157 - 2 890 44670 243 0 1 47 1 3 594 chain 265239 chr5 180915260 + 59374279 59377661 L1PA8A 6298 - 19 4354 15429 64 0 1 62 0 1 86 0 1 490 0 1 82 0 3 96 0 7 493 0 2 6 2 0 344 17 12 72 6 7 339 0 1 181 0 1 48 1 2 371 14 10 104 6 1 19 1 0 113 1 0 228 1 0 30 6 954 11 0 4 88 chain 28874 chr5 180915260 + 59387597 59387905 AluYg6 310 + 0 308 89571 308 chain 83014 chr5 180915260 + 59390890 59392045 L1PA8 5853 - 0 1121 42329 91 71 84 70 2 0 46 1 0 296 41 0 256 2 0 4 1 0 274 chain 15608 chr5 180915260 + 59392045 59392227 L1PA8 5853 + 4501 4684 139558 42 0 1 140 chain 550951 chr5 180915260 + 59399707 59405848 L1PA3long 6157 + 9 6157 1323 1035 1 2 921 0 5 1216 0 1 2968 chain 34103 chr5 180915260 + 59416633 59417081 MLT2A1 477 + 7 477 77476 162 4 1 112 0 3 88 0 12 11 3 0 6 4 17 58 chain 24994 chr5 180915260 + 59419117 59419473 THE1A 353 - 0 353 104831 227 20 19 13 1 0 46 0 1 34 2 0 13 chain 51739 chr5 180915260 + 59433206 59434077 L1PA11 4918 - 340 1199 57794 11 2 0 13 29 24 10 16 12 17 4 3 16 2 0 51 0 7 7 4 0 13 2 1 63 1 0 95 19 23 62 2 1 83 15 0 9 6 21 255 13 11 51 chain 24685 chr5 180915260 + 59463088 59463351 AluYf4 310 - 4 267 106523 263 chain 24958 chr5 180915260 + 59478429 59478727 AluY 311 + 6 303 105014 118 2 1 178 chain 27505 chr5 180915260 + 59489215 59489519 AluYf4 310 + 0 303 94638 207 2 1 95 chain 4667 chr5 180915260 + 59512882 59512932 L1MB3 1562 + 1226 1276 198890 50 chain 9338 chr5 180915260 + 59534714 59534837 MER85 139 - 0 131 163865 29 1 0 11 0 10 35 1 0 46 chain 3235 chr5 180915260 + 59580716 59580816 Tigger13a 716 - 123 224 220342 33 48 49 19 chain 20211 chr5 180915260 + 59589085 59589365 AluSc8 310 + 15 296 126496 32 0 11 74 11 14 142 13 0 8 chain 40140 chr5 180915260 + 59592454 59592928 L1PA7 6471 + 5994 6466 69126 114 0 2 349 4 0 7 chain 227417 chr5 180915260 + 59595818 59599873 L1PA11 4918 - 351 3489 17456 13 1 0 15 71 57 10 2 0 43 1 3 19 17 14 55 10 6 4 1 0 124 1 0 326 0 1 52 315 0 210 0 1 83 9 13 195 1 5 40 8 9 165 1 33 434 0 5 224 11 11 130 7 11 11 1 0 42 2 1 45 0 1 119 319 0 166 323 8 48 1 2 28 0 1 36 0 1 48 1 2 148 0 2 54 1 0 64 chain 27762 chr5 180915260 + 59599130 59599433 AluYg6 310 - 8 310 93831 29 1 0 273 chain 30032 chr5 180915260 + 59600190 59600505 AluYb8 318 + 0 315 84708 315 chain 535063 chr5 180915260 + 59610314 59616454 L1PA4 6152 - 0 6149 3585 519 0 1 1220 0 2 327 2 0 309 0 1 1065 5 0 8 9 15 155 0 3 1463 0 2 352 0 1 706 chain 29429 chr5 180915260 + 59640942 59641275 L1PA5 6144 + 5803 6135 86938 198 1 0 134 chain 21261 chr5 180915260 + 59684244 59684492 L1PA8A 6298 - 17 286 122990 91 0 21 157 chain 25106 chr5 180915260 + 59696086 59696375 AluY 311 + 19 309 104250 113 0 1 176 chain 4321 chr5 180915260 + 59703585 59703631 MADE1 96 + 50 96 202948 46 chain 101478 chr5 180915260 + 59711100 59712557 LTR12C 1709 + 0 1709 36405 214 13 11 16 0 1 21 0 1 27 5 6 41 8 51 54 4 3 17 3 0 143 0 1 43 0 119 68 1 0 72 0 78 56 28 75 97 44 13 384 14 13 84 chain 513154 chr5 180915260 + 59716406 59722516 L1PA6 6164 + 0 6161 5868 233 0 15 162 0 1 6 1 0 370 0 17 424 0 1 1101 1 2 96 0 1 756 2 0 4 0 1 50 0 4 22 0 5 60 0 1 323 0 5 685 3 1 6 0 2 462 5 6 238 0 1 61 1 0 426 0 2 146 0 2 304 10 1 12 0 8 131 2 0 7 chain 139551 chr5 180915260 + 59726376 59727946 SVA_D 2077 - 6 2073 26211 588 0 1 55 26 252 8 0 269 740 0 1 153 chain 88881 chr5 180915260 + 59728335 59729605 L1PA15 4387 + 3101 4352 40051 66 6 5 58 1 0 581 3 1 15 5 0 28 0 11 21 2 0 46 1 0 171 2 1 25 2 1 54 1 0 13 4 0 19 1 0 43 13 10 44 3 1 14 5 0 23 chain 125748 chr5 180915260 + 59736927 59738417 L1PA7 6471 + 4970 6466 29171 56 0 1 112 0 1 156 0 1 324 2 0 82 1 0 618 1 0 15 2 8 23 0 1 98 chain 27411 chr5 180915260 + 59745182 59745479 L1PA3long 6157 + 5859 6156 94934 297 chain 6510 chr5 180915260 + 59745648 59745719 L1PA3long 6157 + 6085 6156 181166 71 chain 13571 chr5 180915260 + 59787815 59787963 L1PA2 6032 + 5884 6032 146090 148 chain 31234 chr5 180915260 + 59788368 59788725 L1PA6 6164 + 5804 6161 82104 357 chain 141293 chr5 180915260 + 59796829 59798388 L1PA3long 6157 - 0 1558 25938 779 5 4 775 chain 3574 chr5 180915260 + 59798388 59798429 L1P1 4361 - 4318 4359 209830 41 chain 11766 chr5 180915260 + 59826592 59826819 LTR12C 1709 + 769 1037 153195 53 41 0 15 1 0 29 9 51 59 0 41 20 chain 512212 chr5 180915260 + 59851432 59857469 L1PA4 6152 + 134 6151 5951 314 2 1 351 38 21 28 14 15 111 2 1 440 0 5 856 0 1 946 0 1 164 2 1 102 0 1 592 2 0 262 0 4 798 0 5 637 17 0 355 0 1 4 chain 41770 chr5 180915260 + 59863200 59863693 L1PA8A 6298 - 7 500 66943 119 0 1 5 1 0 368 chain 92782 chr5 180915260 + 59865377 59866414 L1PA3long 6157 - 0 1035 38722 5 2 0 1030 chain 372057 chr5 180915260 + 59867584 59871933 L1P1 4361 - 20 4360 11024 12 2 1 23 1 0 155 1 0 472 1 2 995 4 1 1009 0 2 272 0 1 145 12 11 9 0 1 529 7 0 115 0 1 11 1 0 573 chain 23032 chr5 180915260 + 59871956 59872242 MSTA-int 1630 - 1322 1613 115485 73 0 3 106 0 2 107 chain 33123 chr5 180915260 + 59895359 59895824 MER9a3 513 + 33 513 79024 146 0 1 76 7 6 12 1 2 42 0 21 94 30 23 57 chain 24762 chr5 180915260 + 59896679 59897042 THE1C 375 + 0 375 106102 62 12 7 8 0 14 11 6 7 103 8 11 126 1 0 26 chain 537328 chr5 180915260 + 59910987 59917120 L1PA4 6152 + 0 6148 3271 475 0 4 936 1 6 1628 0 1 2062 0 1 670 0 1 219 0 1 120 0 2 22 chain 30480 chr5 180915260 + 59917148 59917508 L1PA5 6144 + 5761 6131 83469 153 0 10 207 chain 55909 chr5 180915260 + 59920559 59921278 L1PA7 6471 - 10 707 55179 89 30 7 57 2 1 407 0 2 134 chain 868 chr5 180915260 + 59942348 59942437 MER2 342 + 19 104 179595 47 4 3 10 4 1 24 chain 30779 chr5 180915260 + 59942559 59943003 MER1A 529 + 92 529 82905 34 27 28 14 4 7 286 11 0 68 chain 355586 chr5 180915260 + 59948463 59954249 L1PB1 5432 - 19 5096 11458 9 1 0 13 1 0 21 1 0 24 2 0 14 11 8 16 41 29 43 1 0 9 8 7 52 2 0 7 9 5 12 3 2 4 1 0 21 27 19 192 4 0 19 0 3 67 0 7 11 1 5 168 7 4 72 1 0 93 8 0 6 0 1 71 12 17 527 0 1 92 1 0 10 4 0 10 21 5 224 0 1 278 0 2 205 0 1 19 6 7 138 20 0 7 1 17 121 0 2 7 2 0 93 2 4 4 0 1 88 1 0 65 0 5 175 0 3 317 737 65 121 8 7 222 3 1 107 2 0 9 11 15 104 1 4 32 4 8 130 0 1 332 8 9 4 1 0 360 1 0 66 chain 323634 chr5 180915260 + 59957011 59961211 HERV17-int 4347 + 12 4347 12459 15 1 0 50 5 4 32 2 0 18 9 8 73 14 15 100 0 430 597 1 0 5 309 11 98 0 1 542 0 1 63 16 17 498 1 0 328 0 1 394 1 0 314 0 1 4 1 0 322 0 5 80 0 1 307 chain 54843 chr5 180915260 + 59961528 59962239 LTR17 781 + 1 754 55805 60 1 0 118 1 0 93 0 1 54 1 0 203 1 0 11 0 1 153 2 46 13 chain 25071 chr5 180915260 + 59968102 59968462 THE1D 372 - 0 364 104455 176 2 0 5 20 22 8 0 1 21 0 4 31 1 0 96 chain 8644 chr5 180915260 + 59969754 59969865 MER85 139 + 1 122 167509 88 0 10 23 chain 2174 chr5 180915260 + 59977932 59977955 L1PA4 6152 + 5732 5755 236875 23 chain 34808 chr5 180915260 + 59977956 59978348 L1PA4 6152 + 5755 6152 76459 386 0 5 6 chain 17653 chr5 180915260 + 59997496 59997744 MER50 708 - 462 708 133833 64 0 1 9 0 4 61 1 2 45 16 8 52 chain 21237 chr5 180915260 + 60004271 60004654 MSTA 426 + 26 426 123065 82 0 5 18 17 23 24 47 52 6 2 0 73 1 0 55 0 2 12 6 8 40 chain 278005 chr5 180915260 + 60007578 60012217 L1PA7 6471 - 6 6468 14748 584 313 0 80 0 4 180 0 3 71 5 2904 255 0 4 202 762 0 413 0 1 265 0 1 39 0 1 453 1 2 41 0 1 93 0 1 4 10 9 197 1 2 189 1 0 57 16 0 237 13 12 157 chain 65139 chr5 180915260 + 60009272 60010014 L1PA5 6144 + 5401 6144 50508 110 0 1 477 7 10 5 3 0 140 chain 130893 chr5 180915260 + 60015686 60017570 L1PA15 4387 + 1819 3704 27885 65 5 10 142 0 1 175 16 4 6 0 1 111 0 1 52 0 3 24 1 2 71 3 4 200 23 34 17 37 24 40 0 3 21 0 2 6 5 3 92 0 1 87 4 8 139 2 0 13 10 9 233 7 10 65 0 1 35 0 1 145 9 0 13 0 1 10 chain 43026 chr5 180915260 + 60023516 60024360 L1PBa 3878 - 1056 1623 65390 109 2 0 23 0 1 55 0 4 158 281 2 32 5 4 179 chain 296580 chr5 180915260 + 60027067 60031103 L1PA7 6471 + 2645 6470 13611 441 22 22 253 0 42 21 0 27 46 9 0 24 0 1 313 1 0 126 5 4 673 0 1 29 0 4 256 0 1 191 0 5 144 0 6 346 0 3 173 326 0 232 1 39 69 2 1 174 4 3 155 chain 108730 chr5 180915260 + 60055468 60056672 L1PA3long 6157 - 1 1205 34497 1204 chain 52399 chr5 180915260 + 60069874 60070569 L1PA17 2846 + 773 1464 57354 132 17 0 60 0 3 246 0 1 97 1 10 142 chain 7022 chr5 180915260 + 60076246 60076352 THE1D-int 1627 - 1493 1600 177312 60 11 12 35 chain 53041 chr5 180915260 + 60091061 60091802 LTR17 781 + 0 757 56991 59 1 0 86 13 11 23 1 0 8 8 6 13 0 1 29 1 0 26 1 2 63 1 0 369 1 23 38 chain 5050 chr5 180915260 + 60102448 60102510 MLT1C 463 - 57 120 194635 51 0 1 11 chain 2975 chr5 180915260 + 60126559 60126596 L1MB3 1562 - 46 83 225519 37 chain 535500 chr5 180915260 + 60156222 60162253 L1PA3long 6157 + 4 6144 3517 147 4 5 397 0 1 222 0 128 1677 0 3 105 0 1 487 1 0 89 0 4 572 32 1 103 0 1 1061 0 1 606 0 1 528 chain 532989 chr5 180915260 + 60171726 60177827 L1PA4 6152 - 9 6144 3851 91 0 11 132 1 0 908 0 1 357 0 5 278 0 4 417 0 1 595 0 2 55 0 1 897 0 4 761 0 1 496 0 1 250 0 2 18 7 8 140 2 3 696 chain 11092 chr5 180915260 + 60206893 60207035 L1PA7 6471 - 5 147 155832 14 1 0 22 0 1 105 chain 174792 chr5 180915260 + 60208219 60210309 L1P1 4361 - 20 2112 21495 12 2 1 23 4 3 154 1 0 1369 0 2 298 0 1 64 0 3 104 1 0 58 chain 219056 chr5 180915260 + 60229424 60232596 L1PB1 5432 - 9 3204 17942 5 2 0 14 1 0 11 0 3 20 1 0 24 2 0 6 44 32 8 2 0 4 1 0 15 1 0 27 1 0 18 1 0 17 1 0 39 0 1 11 2 0 10 17 12 8 1 0 24 24 11 399 0 2 48 0 3 25 3 0 9 0 3 5 12 16 102 0 11 374 1 0 120 1 30 30 0 1 75 15 11 51 0 7 60 2 0 343 2 1 355 14 23 66 0 4 53 31 38 231 12 13 98 13 5 70 1 4 189 chain 10325 chr5 180915260 + 60247162 60247332 L1MC2 1988 - 478 651 159011 36 26 29 92 1 0 4 0 1 11 chain 22651 chr5 180915260 + 60258383 60258671 AluSc8 310 + 6 297 117315 117 1 0 9 0 3 123 4 5 34 chain 3895 chr5 180915260 + 60260595 60260677 L1MA8 2339 - 140 220 208920 34 24 22 24 chain 34673 chr5 180915260 + 60266971 60267703 L1PA5 6144 - 1 412 76661 10 3 1 115 319 0 285 chain 15787 chr5 180915260 + 60278009 60278212 THE1B 368 - 0 199 138990 80 2 1 85 3 0 33 chain 293847 chr5 180915260 + 60278239 60281552 L1PA4 6152 - 12 3333 13776 1468 1 2 239 1 0 71 0 4 417 0 1 45 0 3 1071 chain 16940 chr5 180915260 + 60288005 60288319 L1MA1 4479 - 341 639 135749 31 2 0 22 8 7 53 3 1 69 12 8 38 5 0 18 15 14 18 1 0 19 chain 4119 chr5 180915260 + 60289376 60289540 MER52A 1651 - 731 862 205665 23 28 63 31 68 0 14 chain 153179 chr5 180915260 + 60300775 60302538 L1PA5 6144 - 9 1770 24204 738 3 0 1008 0 1 14 chain 44327 chr5 180915260 + 60302794 60303284 L1PA3long 6157 - 850 1340 63793 490 chain 75731 chr5 180915260 + 60303285 60304131 L1PA3long 6157 + 5303 6149 45631 846 chain 152805 chr5 180915260 + 60326992 60329063 L1PA7 6471 - 3 1833 24252 7 3 0 39 1 0 42 6 16 256 79 9 396 2 1 379 0 2 424 2 0 4 176 0 255 chain 12647 chr5 180915260 + 60328649 60328798 L1PA7 6471 - 511 660 149650 149 chain 9578 chr5 180915260 + 60345503 60345628 L1MB2 1706 - 212 336 162704 17 1 0 35 0 1 39 1 0 32 chain 69219 chr5 180915260 + 60362989 60363758 L1PA4 6152 - 0 771 48712 6 0 2 763 chain 4550 chr5 180915260 + 60372881 60372932 L2a 937 - 779 830 200207 51 chain 51125 chr5 180915260 + 60387901 60388628 L1PA13 3608 - 120 817 58233 21 1 0 19 2 0 4 2 0 22 25 0 26 2 0 5 1 0 56 1 0 61 2 0 65 0 2 45 1 7 23 1 0 239 1 0 102 chain 14933 chr5 180915260 + 60393079 60393289 MER47A 366 - 51 262 141526 14 6 5 163 1 2 9 0 1 17 chain 25951 chr5 180915260 + 60399639 60399984 MER47A 366 + 23 366 100205 68 1 0 99 1 0 105 0 1 18 7 6 46 chain 69088 chr5 180915260 + 60403510 60404300 L1PA3long 6157 - 15 771 48769 306 34 0 450 chain 10903 chr5 180915260 + 60407883 60408035 L1MA3 4352 - 3706 3862 156577 25 1 5 126 chain 259282 chr5 180915260 + 60422621 60425624 L1PA5 6144 + 3138 6139 15739 26 1 0 6 1 0 73 0 3 583 0 4 97 28 17 327 3 0 354 1 0 669 0 4 135 3 5 72 0 1 119 0 1 505 chain 159445 chr5 180915260 + 60449899 60451784 L1PA6 6164 - 2 1896 23411 497 0 1 124 5 6 218 0 3 482 0 1 50 0 1 25 0 5 68 10 3 318 0 1 83 0 3 5 chain 22569 chr5 180915260 + 60462783 60463061 AluSp 311 + 27 297 117722 227 8 0 43 chain 8764 chr5 180915260 + 60489494 60489612 L1PB2 3958 - 120 239 166846 7 0 1 56 2 0 27 0 2 26 chain 291295 chr5 180915260 + 60492144 60496121 L1PA10 4194 - 48 4019 13941 30 3 0 150 0 9 89 0 15 148 0 1 55 0 6 122 1 2 389 0 1 54 0 18 28 2 1 314 0 2 62 1 2 12 13 14 144 0 1 161 0 1 88 2 6 12 16 0 289 1 0 4 0 1 27 3 7 186 5 10 802 0 9 10 0 1 379 12 2 79 1 0 9 8 4 10 1 0 10 1 0 7 1 0 6 4 3 18 3 1 10 66 39 15 2 0 21 1 0 9 1 0 9 47 36 6 3 0 15 chain 45499 chr5 180915260 + 60500000 60500575 L1PA6 6164 + 5563 6153 62497 98 0 14 151 2 0 51 2 5 271 chain 121777 chr5 180915260 + 60501724 60503283 THE1B-int 1605 - 0 1605 30455 438 0 1 388 0 1 80 9 11 205 24 49 170 3 13 15 0 3 115 0 3 79 0 1 33 chain 3293 chr5 180915260 + 60515452 60515490 MER44B 551 - 42 80 219127 38 chain 67254 chr5 180915260 + 60531934 60532716 L1PA6 6164 + 5376 6157 49541 449 1 0 332 chain 536954 chr5 180915260 + 60534701 60540822 L1PA4 6152 + 0 6143 3318 868 6 5 170 0 2 102 0 5 1168 1 0 7 1 0 837 0 1 93 0 5 31 0 1 457 0 11 1060 2 1 353 0 1 257 0 1 473 1 0 234 chain 22203 chr5 180915260 + 60562828 60563241 THE1C 375 + 8 347 119336 84 27 22 49 68 0 23 1 0 18 1 0 4 2 0 5 0 3 131 chain 3863 chr5 180915260 + 60652322 60652368 MADE1 96 - 50 96 209404 46 chain 6350 chr5 180915260 + 60660757 60660853 MER58B 340 + 242 340 182381 20 13 15 63 chain 77988 chr5 180915260 + 60708851 60709718 L1PA3long 6157 - 0 867 44516 867 chain 81797 chr5 180915260 + 60717712 60718950 L1MA2 4263 - 665 1886 42845 12 6 6 31 4 1 118 6 0 264 1 0 7 8 9 74 8 9 105 0 1 58 6 7 126 28 26 65 0 5 26 5 7 139 9 14 42 26 5 64 chain 5573 chr5 180915260 + 60730493 60730582 L1PB2 3958 - 120 209 189343 63 9 8 9 0 1 8 chain 54515 chr5 180915260 + 60739776 60740387 L1PA4 6152 - 1 612 56019 611 chain 22746 chr5 180915260 + 60752731 60752986 L1PA2 6032 - 4 255 116841 7 4 0 244 chain 13301 chr5 180915260 + 60767448 60767664 MER1B 344 + 130 339 147074 110 8 0 22 16 24 6 7 0 47 chain 19102 chr5 180915260 + 60778076 60778313 L1PA7 6471 + 6211 6455 129811 101 3 1 98 0 9 35 chain 6809 chr5 180915260 + 60808981 60809108 L1MC1 2226 - 182 308 178878 52 2 0 8 7 4 20 2 7 8 1 0 27 chain 115293 chr5 180915260 + 60813630 60814899 L1PA3long 6157 - 7 1283 32683 10 1 0 121 0 7 711 0 1 426 chain 56263 chr5 180915260 + 60850538 60851240 THE1D-int 1627 - 925 1627 54987 38 0 2 5 2 0 352 1 2 266 1 0 37 chain 5688 chr5 180915260 + 60858266 60858333 MLT1A1 405 - 12 79 188224 67 chain 11225 chr5 180915260 + 60919968 60920124 MER30 238 + 58 238 155327 49 3 24 30 0 6 23 3 0 48 chain 201385 chr5 180915260 + 60923840 60926210 L1PA7 6471 + 4089 6467 19112 1121 0 2 400 1 4 84 0 2 308 0 2 98 0 1 209 0 1 140 3 0 6 chain 15082 chr5 180915260 + 60996699 60996922 MER30 238 + 0 238 141079 105 6 0 8 1 23 78 2 1 23 chain 3965 chr5 180915260 + 61003539 61003615 MIR 256 + 104 181 207901 26 0 1 19 4 0 6 7 11 14 chain 44179 chr5 180915260 + 61005328 61005897 L1PA10 4194 + 3587 4105 63973 305 50 0 190 1 0 23 chain 28114 chr5 180915260 + 61006911 61007247 L1PA6 6164 - 2 333 92591 6 5 0 325 chain 5756 chr5 180915260 + 61052702 61052941 L1MA4 2864 - 65 265 187582 33 2 0 17 144 107 43 chain 21780 chr5 180915260 + 61068242 61068631 THE1D 372 + 0 372 121101 38 36 7 27 1 11 18 8 9 10 6 4 41 25 28 179 chain 7019 chr5 180915260 + 61076840 61076947 MLT1B 390 + 17 124 177329 28 7 0 6 0 7 66 chain 21534 chr5 180915260 + 61081819 61082266 L1PB1 5432 + 5013 5422 122030 90 1 2 9 9 0 16 9 8 6 1 0 12 18 12 52 1 2 4 2 0 10 1 0 44 1 0 11 1 0 5 1 0 6 15 6 18 28 23 21 1 0 22 1 0 12 1 0 18 chain 100376 chr5 180915260 + 61088755 61089967 L1PA8 5853 - 0 1225 36662 93 1 0 19 2 1 49 1 0 12 1 0 71 2 0 43 2 1 66 0 1 490 0 4 301 0 15 59 chain 25013 chr5 180915260 + 61131428 61131791 THE1A 353 + 0 353 104720 60 1 3 5 2 0 42 1 0 123 3 2 6 0 1 16 1 0 37 0 1 4 13 4 49 chain 22701 chr5 180915260 + 61132464 61132826 THE1B 368 + 0 368 117071 54 32 36 79 1 0 23 13 17 4 0 1 16 1 0 12 1 0 126 chain 3815 chr5 180915260 + 61145969 61146026 L1MC1 2226 + 25 81 210156 37 2 1 18 chain 22825 chr5 180915260 + 61167165 61167468 THE1B 368 - 0 303 116470 10 3 2 55 0 2 124 2 1 109 chain 235898 chr5 180915260 + 61185704 61188347 L1PA4 6152 - 18 2666 16982 95 0 1 655 0 2 1147 0 1 454 0 1 292 chain 367414 chr5 180915260 + 61204382 61208857 HERVL-int 5654 - 0 4484 11173 222 2 3 413 0 1 111 0 3 85 0 1 300 5 4 227 0 4 180 6 7 754 41 30 137 1 0 1186 20 21 514 1 9 99 0 2 171 chain 207937 chr5 180915260 + 61208859 61211722 MER61-int 3695 + 900 3695 18642 119 0 1 46 8 7 174 0 1 52 0 2 13 47 4 115 1 0 97 4 0 96 1 0 429 10 6 51 0 1 30 1 3 38 0 5 194 1 2 11 12 1 11 0 1 136 0 3 61 14 10 145 1 0 102 18 14 271 2 0 151 4 0 44 2 0 83 9 6 259 chain 6421 chr5 180915260 + 61226599 61226794 L1MA4 2864 - 583 774 181849 45 86 83 29 7 6 28 chain 89755 chr5 180915260 + 61252529 61253572 L1PA7 6471 + 5422 6466 39736 199 1 0 48 1 2 339 2 1 148 0 1 6 0 1 299 chain 29916 chr5 180915260 + 61293640 61293958 AluYb8 318 + 0 318 85051 318 chain 297628 chr5 180915260 + 61318782 61322647 L1P2 5180 - 721 4584 13543 270 16 8 72 0 1 223 1 0 652 9 13 5 1 0 26 1 0 260 0 4 6 12 8 332 0 4 176 0 1 71 3 0 102 7 8 8 0 2 194 0 2 4 1 0 29 9 6 563 4 6 96 0 1 255 2 1 5 0 1 145 0 4 91 1 15 4 0 1 44 22 1 143 chain 47290 chr5 180915260 + 61322673 61323216 L1PA4 6152 - 1 546 60971 140 11 13 392 chain 43554 chr5 180915260 + 61323216 61323701 L1PA4 6152 + 5119 5607 64737 187 0 4 204 1 0 93 chain 513848 chr5 180915260 + 61327507 61333886 L1PA7 6471 - 4 6414 5797 158 0 1 170 0 1 341 1 3 169 1 2 425 0 1 4 1 0 244 0 1 209 0 8 307 0 1 412 11 10 476 0 1 660 0 1 154 0 4 63 0 2 101 1 2 245 9 6 386 0 3 112 0 1 325 6 1 178 11 30 4 0 1 342 4 0 6 13 17 132 0 5 167 5 2 100 1 0 70 9 0 147 6 4 8 0 1 175 1 2 9 chain 12624 chr5 180915260 + 61358615 61358761 L1PA5 6144 - 3 145 149753 6 4 0 136 chain 52183 chr5 180915260 + 61371803 61372513 LTR8 732 + 11 732 57509 4 0 1 14 0 9 74 9 8 286 0 3 82 0 2 23 22 20 4 1 0 191 chain 76245 chr5 180915260 + 61392139 61393008 L1PA5 6144 + 5264 6135 45335 219 0 3 545 1 0 104 chain 4251 chr5 180915260 + 61393522 61393573 MIR 256 - 107 158 203852 51 chain 456991 chr5 180915260 + 61398175 61404101 HERVL-int 5654 + 0 5654 8514 114 321 0 20 19 40 304 0 3 55 1 0 4 0 5 36 0 1 63 3 5 86 1 5 164 1 3 53 0 5 98 0 4 520 19 1 209 0 1 110 9 11 389 0 2 213 0 1 473 0 2 25 0 1 184 1 0 966 0 1 103 0 4 531 0 1 199 0 1 29 9 10 374 1 2 172 1 5 46 chain 31308 chr5 180915260 + 61404101 61404520 MLT2A1 477 + 0 477 81976 17 0 4 121 0 1 26 0 4 151 1 0 58 0 2 9 15 63 21 chain 38652 chr5 180915260 + 61405306 61405809 MLT2A2 560 + 0 520 71223 183 1 0 223 0 11 18 0 7 56 0 6 6 6 0 10 chain 2971 chr5 180915260 + 61411202 61411324 MIRb 242 - 57 175 225642 5 3 0 21 66 65 27 chain 39661 chr5 180915260 + 61415377 61416003 LTR12 884 + 0 751 69810 189 4 161 15 3 2 10 2 0 247 95 66 61 chain 26535 chr5 180915260 + 61450001 61450364 THE1B 368 - 0 368 97912 75 1 0 93 0 2 24 0 2 7 2 0 61 0 1 61 10 15 14 2 0 13 chain 127539 chr5 180915260 + 61453737 61455317 THE1B-int 1605 + 0 1605 28686 154 0 1 131 0 1 136 3 28 106 1 0 456 10 9 583 chain 22635 chr5 180915260 + 61455317 61455672 THE1B 368 + 0 368 117403 125 0 19 10 15 0 15 1 0 29 35 45 125 chain 56900 chr5 180915260 + 61466949 61467685 L1PA8 5853 - 0 743 54593 93 1 0 19 2 1 10 7 18 24 1 0 6 8 7 67 2 0 46 1 0 383 6 9 60 chain 5286 chr5 180915260 + 61491763 61491831 MLT2D 439 + 40 108 192148 68 chain 465997 chr5 180915260 + 61521174 61526660 L1PA7 6471 - 3 5567 8191 513 0 1 338 0 2 665 1 0 663 11 23 253 7 6 51 0 1 493 10 70 748 0 2 125 0 1 759 0 1 407 7 1 6 0 6 429 chain 5580 chr5 180915260 + 61532220 61533111 MADE1 96 - 0 96 189279 44 809 14 38 chain 17502 chr5 180915260 + 61540922 61541179 MER50 708 + 450 708 134258 34 1 0 8 18 19 174 4 5 18 chain 28314 chr5 180915260 + 61548865 61549241 THE1C 375 + 0 375 91889 125 3 0 15 2 0 24 0 1 59 5 8 74 0 1 43 1 0 25 chain 343483 chr5 180915260 + 61587371 61591393 L1P1 4361 + 1 3948 11798 229 0 1 8 1 0 498 0 1 312 6 5 392 10 6 116 0 3 786 74 0 801 1 0 773 1 2 14 chain 4943 chr5 180915260 + 61617291 61617349 L1MB7 1623 - 436 494 195766 58 chain 17472 chr5 180915260 + 61619161 61619367 AluYc 301 + 83 289 134322 206 chain 23061 chr5 180915260 + 61621294 61621712 L1PA16 3655 + 2917 3339 115351 172 2 1 114 105 110 25 chain 4683 chr5 180915260 + 61623181 61623238 MER106A 234 - 110 167 198726 57 chain 16620 chr5 180915260 + 61634881 61635253 MSTA 426 - 13 397 136609 17 0 4 101 23 64 19 9 14 21 7 14 20 30 0 43 21 4 14 4 5 14 4 5 25 chain 20990 chr5 180915260 + 61693758 61694027 HSMAR2 1300 - 1016 1299 123957 175 0 15 6 2 1 86 chain 5641 chr5 180915260 + 61703440 61703512 MER57E1 380 - 0 72 188649 72 chain 269111 chr5 180915260 + 61774768 61778333 L1PA6 6164 - 4 3221 15228 6 2 0 306 1 0 656 1 0 279 0 1 269 1 0 144 6 8 119 0 4 161 325 0 438 4 0 60 27 2 389 4 6 31 0 2 336 chain 4029 chr5 180915260 + 61787336 61787472 MER33 330 + 37 202 206945 22 62 72 11 1 17 24 0 3 16 chain 20662 chr5 180915260 + 61804468 61804724 L1PA6 6164 - 39 289 125098 117 6 0 133 chain 9971 chr5 180915260 + 61804724 61804832 L1PA6 6164 + 5766 5874 160718 108 chain 167917 chr5 180915260 + 61808434 61810466 SVA_D 2077 - 2 2076 22291 134 0 20 520 9 8 4 0 1 80 0 1 8 10 37 4 0 1 32 1 0 5 3 0 168 62 16 6 1 0 45 0 43 25 3 1 859 1 0 16 0 4 36 chain 2606 chr5 180915260 + 61809427 61809474 SVA_D 2077 - 893 940 78246 47 chain 85392 chr5 180915260 + 61816204 61839885 L1PA5 6144 - 0 3370 41382 11 1 3 306 0 20 368 22181 1852 752 4 0 58 chain 15753 chr5 180915260 + 61834159 61834542 THE1D 372 + 0 372 139102 34 87 68 26 0 4 34 69 73 133 chain 223889 chr5 180915260 + 61839886 61842433 L1PA5 6144 + 3587 6143 17660 340 0 3 411 0 4 283 1 0 527 2 0 136 0 4 836 1 2 10 chain 14945 chr5 180915260 + 61850843 61851048 L1MA5A 2387 - 1386 1596 141486 74 8 7 23 0 6 100 chain 50707 chr5 180915260 + 61861551 61862250 L1PA8 5853 - 103 792 58498 7 1 0 41 0 3 11 13 4 5 1 0 71 2 0 26 1 2 14 7 6 499 chain 14737 chr5 180915260 + 61915879 61916063 MER4E 760 - 8 192 142150 184 chain 4022 chr5 180915260 + 61936301 61936347 MLT1C 463 - 17 63 207050 46 chain 379580 chr5 180915260 + 61951452 61955788 L1P1 4361 + 1 4328 10768 553 1 0 684 1 0 196 1 0 378 5 6 488 1 0 897 6 1 730 0 1 216 1 0 154 1 0 23 chain 18893 chr5 180915260 + 61959543 61959848 AluSg7 307 - 5 305 130387 64 23 28 58 0 3 7 13 11 56 14 3 70 chain 12015 chr5 180915260 + 61964717 61964855 L1PA4 6152 + 6009 6152 152135 132 0 5 6 chain 60421 chr5 180915260 + 61965127 61965781 L1PA2 6032 - 1 654 52628 148 1 0 505 chain 542124 chr5 180915260 + 61968637 61974777 L1PA4 6152 - 9 6149 2482 2115 5 4 678 0 2 626 1 0 4 0 1 388 3 4 67 0 2 812 1 0 185 13 11 228 1 0 1013 chain 47492 chr5 180915260 + 61986918 61987491 LTR10C 591 - 1 581 60846 56 1 6 19 0 2 364 2 1 4 0 1 127 chain 516930 chr5 180915260 + 62048265 62054340 L1PA5 6144 + 0 6135 5491 120 1 15 18 13 25 227 6 5 395 9 26 338 9 0 44 0 1 195 0 5 504 1 0 186 0 1 207 0 1 849 1 2 523 0 1 653 0 4 949 2 1 630 0 14 43 3 0 6 6 10 137 chain 74403 chr5 180915260 + 62065598 62066586 L1PA7 6471 + 5489 6470 46314 131 2 1 14 1 0 4 1 2 113 2 1 118 16 5 133 0 2 123 0 1 170 7 9 140 0 2 8 1 0 4 chain 55222 chr5 180915260 + 62079767 62080420 L1PA7 6471 - 13 666 55571 653 chain 71452 chr5 180915260 + 62092601 62093596 MER11A 1151 - 7 1151 47722 121 1 19 16 10 11 56 0 1 37 16 21 13 0 26 76 0 4 53 5 7 144 0 1 94 0 1 149 4 0 63 0 4 51 0 91 58 5 4 23 chain 547815 chr5 180915260 + 62094801 62100824 L1PA2 6032 - 4 6032 1727 16 0 2 2173 0 2 3572 0 1 5 1 0 242 0 1 14 chain 213178 chr5 180915260 + 62102646 62105170 L1PA7 6471 - 10 2544 18285 837 0 3 18 10 14 570 0 1 6 1 0 728 0 3 66 0 1 204 1 0 83 chain 554756 chr5 180915260 + 62113121 62119199 L1PA2 6032 + 1 6030 854 4 0 1 696 5 12 1717 0 1 1352 58 0 2246 chain 26353 chr5 180915260 + 62127703 62128056 THE1A 353 - 0 353 98601 173 5 6 4 1 0 76 1 0 46 0 1 47 chain 128494 chr5 180915260 + 62128056 62129625 THE1A-int 1579 - 0 1579 28456 208 0 4 307 0 1 176 0 3 639 1 0 131 0 3 107 chain 509716 chr5 180915260 + 62132924 62139052 L1PA6 6164 + 1 6156 6189 203 3 0 256 6 5 168 25 2 161 0 17 354 0 3 47 15 42 20 0 1 147 9 11 439 0 1 456 1 0 855 0 2 127 1 0 1047 0 4 114 5 1 834 0 4 524 9 8 302 chain 4934 chr5 180915260 + 62139517 62139578 MLT1A1 405 - 54 115 195889 61 chain 3991 chr5 180915260 + 62157694 62157791 MER52D 1964 - 728 805 207517 16 24 18 14 14 0 29 chain 549783 chr5 180915260 + 62158982 62165127 L1PA3long 6157 + 6 6157 1475 2067 0 6 214 2 0 11 19 19 288 0 1 564 0 1 85 0 1 4 1 0 651 1 0 4 0 1 1315 0 1 648 12 11 259 chain 11509 chr5 180915260 + 62183616 62183908 MLT1A 405 + 68 387 154257 11 6 5 40 69 97 69 2 31 7 28 0 6 1 0 53 chain 462413 chr5 180915260 + 62186702 62192497 L1PA8 5853 - 7 5803 8306 86 1 0 19 2 1 52 1 0 11 1 0 68 4 2 43 1 0 49 1 0 439 7 6 61 2 0 3 1 0 24 1 0 583 0 1 182 4 1 427 0 1 118 0 2 453 1 0 326 1 0 18 5 1 384 0 4 273 13 14 210 0 1 359 0 2 65 0 5 388 0 10 29 0 1 413 0 28 16 0 1 113 35 40 201 22 10 53 0 12 129 66 29 8 2 0 21 chain 9709 chr5 180915260 + 62207173 62207313 L1PA17 2846 - 164 300 162043 6 0 1 25 1 0 18 1 0 32 1 0 8 2 0 46 chain 83756 chr5 180915260 + 62221494 62222576 L1PA8 5853 + 4773 5853 42006 237 6 4 50 17 20 290 0 3 143 0 1 43 1 0 46 2 0 70 1 0 13 1 0 44 8 7 16 1 0 93 chain 6265 chr5 180915260 + 62223438 62223516 LTR23 429 - 61 139 183049 78 chain 24904 chr5 180915260 + 62224538 62224911 LTR7B 505 + 0 490 105318 106 1 11 54 13 81 59 1 42 88 14 13 20 0 1 4 3 1 10 chain 7914 chr5 180915260 + 62243607 62243699 L1PA8 5853 + 5761 5853 171556 92 chain 380313 chr5 180915260 + 62246140 62250467 L1PA5 6144 - 9 4337 10746 131 7 0 13 3 10 96 1 0 2726 0 1 987 0 1 363 chain 23747 chr5 180915260 + 62255030 62255377 THE1B 368 + 0 368 111792 44 6 21 104 6 5 50 3 9 32 1 2 101 chain 23856 chr5 180915260 + 62258298 62258655 THE1B 368 - 0 368 111148 158 10 8 10 23 20 62 2 3 50 1 16 41 chain 18700 chr5 180915260 + 62258660 62258880 THE1B-int 1605 - 5 227 130947 199 0 2 21 chain 23776 chr5 180915260 + 62261107 62261464 THE1B 368 - 0 368 111619 97 0 1 68 2 0 10 2 0 23 1 0 82 31 46 41 chain 27973 chr5 180915260 + 62263000 62263377 MER57B1 401 + 0 378 93105 241 7 6 114 1 3 14 chain 86029 chr5 180915260 + 62265789 62266848 L1PBa1 4058 + 753 1813 41080 577 0 1 326 0 1 4 1 0 151 chain 90866 chr5 180915260 + 62266848 62268220 L1PB1 5432 + 4106 5420 39332 97 3 4 260 0 4 155 9 7 170 10 12 160 1 2 18 1 2 90 63 29 18 1 0 12 1 0 12 18 12 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 33976 chr5 180915260 + 62299742 62300122 L1PA4 6152 - 1 381 77649 380 chain 11024 chr5 180915260 + 62304408 62304715 LTR12D 1347 + 587 776 156115 106 169 51 32 chain 7182 chr5 180915260 + 62304568 62304645 LTR12D 1347 + 437 514 176198 77 chain 12934 chr5 180915260 + 62315915 62316091 Tigger1 2417 - 1345 1517 148487 69 11 7 96 chain 4660 chr5 180915260 + 62318909 62318974 Tigger3c 601 + 343 410 198956 18 1 3 46 chain 15685 chr5 180915260 + 62345274 62345445 L1PA4 6152 - 6 177 139312 171 chain 8074 chr5 180915260 + 62359466 62359568 L1PA7 6471 + 6369 6469 170623 86 2 0 14 chain 11438 chr5 180915260 + 62362105 62362256 L1PA4 6152 + 5975 6136 154538 26 0 1 70 7 17 5 1 0 42 chain 20523 chr5 180915260 + 62368124 62368502 THE1D 372 + 16 372 125560 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42 58 59 49 1 0 30 16 17 76 1 0 32 chain 9621 chr5 180915260 + 63115988 63116112 MER85 139 - 0 134 162485 39 0 10 85 chain 20901 chr5 180915260 + 63120938 63121237 MER1A 529 - 8 303 124269 50 26 22 223 chain 3078 chr5 180915260 + 63130119 63130179 MER82 654 - 185 242 223360 27 11 8 22 chain 100593 chr5 180915260 + 63143524 63144709 L1PA5 6144 + 4955 6144 36603 20 0 1 300 0 4 354 2 0 176 0 1 52 2 1 126 6 0 10 0 7 137 chain 68507 chr5 180915260 + 63153350 63154249 L1PA8A 6298 - 14 940 49036 9 0 9 16 5 6 58 2 7 72 0 4 113 3 10 409 14 15 22 0 1 43 2 1 131 chain 24523 chr5 180915260 + 63176111 63176390 L1PA5 6144 + 5855 6134 107422 279 chain 4256 chr5 180915260 + 63181095 63181172 MER5A 189 + 40 119 203792 6 0 1 24 16 17 31 chain 50326 chr5 180915260 + 63182937 63183520 LTR10C 591 + 0 586 58767 85 0 1 424 1 3 73 chain 19663 chr5 180915260 + 63188845 63189110 L1PA8 5853 - 0 259 128212 93 1 0 15 7 6 51 2 1 6 1 0 73 2 0 14 chain 40540 chr5 180915260 + 63225647 63226151 LTR10D 510 - 0 510 68533 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44534 chr5 180915260 + 64050765 64051430 L1PA16 3655 + 2968 3619 63543 15 0 2 219 1 0 49 3 2 35 6 4 67 0 4 167 1 0 30 0 3 6 42 25 7 1 0 16 chain 43238 chr5 180915260 + 64056070 64056630 LTR19B 566 + 0 566 65129 149 0 1 145 5 10 171 1 0 26 0 1 12 0 1 5 11 10 35 chain 2977 chr5 180915260 + 64080907 64080948 MIRb 242 + 154 194 225488 5 1 0 35 chain 13296 chr5 180915260 + 64109789 64110023 MER30 238 + 0 238 147099 64 17 12 32 4 0 14 16 32 45 3 0 39 chain 28321 chr5 180915260 + 64125476 64125811 L1PA7 6471 - 1 340 91862 11 0 4 324 chain 30084 chr5 180915260 + 64125854 64126756 L1PA5 6144 - 0 434 84544 147 4 9 120 517 43 109 0 1 5 chain 22909 chr5 180915260 + 64178768 64179134 THE1C 375 - 0 375 116069 26 1 0 19 1 0 81 65 76 173 chain 42829 chr5 180915260 + 64193019 64193583 L1PA6 6164 + 5612 6162 65614 364 8 1 16 25 26 75 11 3 65 chain 53215 chr5 180915260 + 64198839 64199519 L1PA8 5853 + 5181 5853 56883 340 6 5 38 1 0 44 2 0 70 2 1 60 3 2 19 4 3 27 1 0 63 chain 450716 chr5 180915260 + 64201516 64206913 L1PA6 6164 - 8 6164 8748 330 1 0 258 0 10 605 5 9 578 0 4 317 0 3 41 8 784 27 0 1 188 0 1 441 0 2 231 0 1 500 0 2 28 53 0 250 0 1 32 5 4 182 0 9 280 0 1 570 7 6 460 chain 541112 chr5 180915260 + 64229941 64236399 L1PA7 6471 - 11 6471 2650 830 11 10 270 0 1 526 0 4 829 0 1 436 0 4 26 2 0 134 0 1 284 0 4 452 17 7 1379 6 0 341 0 1 236 0 1 5 1 0 286 0 4 207 1 2 179 chain 28632 chr5 180915260 + 64286080 64286391 AluYa5 310 - 0 310 90595 184 1 0 126 chain 63388 chr5 180915260 + 64326308 64327103 LTR17 781 + 0 773 51285 272 0 1 54 1 0 387 36 14 45 chain 20963 chr5 180915260 + 64355352 64355639 MSTA-int 1630 + 458 743 124060 11 1 2 8 2 1 171 2 0 92 chain 16331 chr5 180915260 + 64389907 64390490 L1M1 2793 + 525 1001 137398 9 1 0 6 1 0 14 2 0 8 3 0 8 1 0 9 1 0 11 164 93 14 98 78 27 1 0 15 15 13 9 1 0 46 13 11 6 1 0 99 chain 25214 chr5 180915260 + 64391930 64392217 AluSp 311 + 6 296 103663 85 0 3 202 chain 6053 chr5 180915260 + 64416150 64416306 MLT2D 439 - 0 176 184786 35 56 73 12 7 10 46 chain 20233 chr5 180915260 + 64436962 64437332 L1PA13 3608 - 111 447 126434 11 0 4 16 1 0 18 2 0 4 2 0 50 1 0 8 0 9 15 42 0 23 6 5 61 2 0 5 9 13 94 chain 5177 chr5 180915260 + 64437829 64437916 L1P4 1494 - 48 130 193262 33 6 3 20 2 0 26 chain 3503 chr5 180915260 + 64455731 64455772 MADE1 96 - 5 46 215312 41 chain 558825 chr5 180915260 + 64459844 64465875 L1PA2 6032 + 0 6031 424 6031 chain 9141 chr5 180915260 + 64470006 64470116 LTR2 463 + 353 463 164852 110 chain 307965 chr5 180915260 + 64471936 64475515 Harlequin-int 5206 + 125 3710 13087 24 1 0 151 2 0 65 0 7 109 6 1 200 1 0 35 0 2 12 0 1 39 8 1 74 0 1 360 0 3 845 0 1 222 0 3 6 0 1 285 1 0 92 0 1 359 0 3 682 chain 28735 chr5 180915260 + 64505997 64506297 AluYg6 310 + 0 300 90188 300 chain 32494 chr5 180915260 + 64531218 64531654 MLT2A1 477 + 0 477 80036 169 4 1 9 0 1 23 0 1 26 0 2 153 4 0 8 6 50 34 chain 18222 chr5 180915260 + 64534858 64535104 L1PA5 6144 + 5898 6144 132277 76 16 23 9 7 0 138 chain 3957 chr5 180915260 + 64571453 64571497 L1PA8 5853 + 5809 5853 208019 44 chain 30973 chr5 180915260 + 64613199 64613618 L1MA2 4263 + 3232 3642 82561 48 4 0 104 1 2 13 1 0 167 1 0 16 8 4 56 chain 49966 chr5 180915260 + 64618015 64618833 L1PA13 3608 - 73 852 59048 14 6 0 3 1 0 18 20 12 22 1 0 17 20 16 37 17 10 50 1 0 38 26 26 38 0 1 46 14 4 23 1 0 28 1 0 376 chain 96746 chr5 180915260 + 64618945 64620018 L1PA4 6152 - 1 1073 37634 243 1 0 829 chain 22993 chr5 180915260 + 64638008 64638368 THE1B 368 - 0 368 115655 18 3 0 5 4 7 31 2 1 63 40 50 24 1 0 169 chain 537332 chr5 180915260 + 64666090 64672098 L1PA3long 6157 + 0 6157 3269 152 0 1 265 0 1 146 0 1 210 0 128 54 1 5 83 1 0 629 1 0 383 0 16 4083 chain 228671 chr5 180915260 + 64699978 64702584 L1PA5 6144 - 4 2611 17375 620 0 1 1900 0 1 76 1 0 9 chain 11408 chr5 180915260 + 64702584 64702714 L1P1 4361 - 333 463 150739 130 chain 219949 chr5 180915260 + 64702714 64705749 L1P2 5180 + 1394 3919 17880 435 1 0 7 511 0 206 1 0 1295 0 2 289 0 1 290 chain 36067 chr5 180915260 + 64703175 64703585 L1PA4 6152 - 9 515 74805 390 6 102 14 chain 6411 chr5 180915260 + 64703585 64703653 L1PA4 6152 + 5651 5719 169426 68 chain 23572 chr5 180915260 + 64732737 64733406 THE1B 368 - 0 368 112731 116 43 51 28 310 1 172 chain 99629 chr5 180915260 + 64780548 64781821 LTR12C 1709 - 0 1709 36876 13 1 0 44 5 6 21 5 4 43 0 8 29 0 102 211 0 4 106 9 6 85 0 278 206 1 6 69 2 0 32 0 1 54 0 43 323 0 1 14 chain 42422 chr5 180915260 + 64782633 64783179 MLT2A2 560 - 0 558 66114 147 3 14 168 0 1 50 1 0 111 0 1 66 chain 289921 chr5 180915260 + 64783191 64787015 HERVL-int 5654 - 10 3845 14024 100 40 34 23 0 3 56 0 4 21 0 1 4 2 1 81 4 3 56 6 4 204 31 4 169 0 1 4 1 0 301 13 19 116 0 37 197 4 0 198 1 2 30 0 6 15 4 0 555 1 2 128 4 7 430 0 5 76 5 6 21 13 5 352 0 32 61 38 0 199 7 8 119 1 0 37 0 2 96 chain 22615 chr5 180915260 + 64792610 64792908 AluSg7 307 + 12 304 117508 106 3 0 14 1 0 84 2 1 46 1 0 41 chain 84243 chr5 180915260 + 64795494 64796393 L1HS 6032 - 0 899 41801 899 chain 24533 chr5 180915260 + 64828474 64828763 AluSp 311 + 20 309 107354 289 chain 3598 chr5 180915260 + 64839999 64840038 MLT1A0 366 - 155 194 213691 39 chain 29260 chr5 180915260 + 64870275 64870589 AluYb8 318 - 4 318 87738 314 chain 12316 chr5 180915260 + 64883544 64883780 MER44A 345 + 53 310 150956 48 9 15 13 0 1 38 0 10 54 49 53 25 chain 4786 chr5 180915260 + 64895148 64895209 U3 216 + 5 66 197501 61 chain 4471 chr5 180915260 + 64895270 64895349 MADE1 96 + 1 96 201109 16 12 28 51 chain 26255 chr5 180915260 + 64897116 64897462 THE1A 353 - 0 345 99000 155 1 0 88 5 4 35 7 8 55 chain 72837 chr5 180915260 + 64897510 64898428 THE1A-int 1579 - 654 1579 47106 616 1 9 28 1 0 272 chain 28397 chr5 180915260 + 64898428 64898781 THE1A 353 - 0 353 91596 151 1 0 91 1 0 45 0 2 64 chain 7573 chr5 180915260 + 64900487 64900588 U6 107 - 0 107 173707 63 2 8 36 chain 3534 chr5 180915260 + 64903975 64904033 LTR50 688 - 193 252 214806 30 5 6 23 chain 24822 chr5 180915260 + 64933187 64933481 AluY 311 + 11 306 105754 121 0 1 173 chain 25910 chr5 180915260 + 64934416 64935094 THE1B 368 - 0 368 100375 101 0 7 68 2 0 19 2 1 8 317 0 119 0 5 27 3 1 12 chain 269719 chr5 180915260 + 64971412 64975167 L1PA11 4918 + 759 4509 15197 116 0 4 231 0 4 310 98 0 123 0 1 91 1 2 35 0 4 62 1 118 86 23 9 9 0 5 31 23 19 195 6 2 44 0 4 23 0 1 36 0 9 79 15 1 127 9 0 174 2 0 79 1 0 323 4 5 26 6 0 414 0 1 179 0 1 122 2 0 7 0 2 31 0 4 87 12 8 59 15 19 116 4 1 94 11 12 27 1 0 62 2 1 13 2 0 6 1 0 62 19 16 18 chain 21033 chr5 180915260 + 65030853 65031158 THE1C 375 + 0 375 123798 31 0 64 9 5 6 26 1 5 40 4 5 189 chain 15054 chr5 180915260 + 65044684 65044983 THE1B 368 + 0 306 141161 58 62 63 48 1 0 6 4 5 18 0 3 9 0 4 18 1 0 10 2 1 27 0 1 35 chain 8617 chr5 180915260 + 65103045 65103219 Tigger1 2417 + 2079 2215 167649 27 40 7 31 5 1 26 1 0 44 chain 43561 chr5 180915260 + 65140040 65140584 MER41A 554 - 7 554 64730 61 0 1 4 3 2 48 0 1 115 0 1 10 0 1 303 chain 513338 chr5 180915260 + 65142726 65148896 L1PA6 6164 - 8 6164 5848 151 12 13 240 1 0 429 0 4 105 0 1 1516 2 0 174 3 0 333 0 1 4 9 0 34 1 0 816 4 1 4 1 0 754 2 1 446 27 30 275 0 17 238 1 0 118 19 0 27 30 30 394 chain 26779 chr5 180915260 + 65164081 65164450 MLT2A1 477 - 92 477 97052 130 2 0 5 0 7 31 2 4 35 1 5 24 1 2 121 0 4 17 chain 9219 chr5 180915260 + 65174972 65175082 Tigger1 2417 + 1721 1831 164464 110 chain 19173 chr5 180915260 + 65196635 65196993 MSTA 426 - 12 382 129603 96 37 45 22 45 46 49 9 13 66 1 0 33 chain 162314 chr5 180915260 + 65235337 65237159 SVA_D 2077 + 6 2077 23022 18 9 0 884 2 0 9 2 0 11 0 38 36 0 46 5 0 2 38 1 0 88 0 176 31 0 1 688 chain 121593 chr5 180915260 + 65253068 65254481 SVA_C 1631 - 23 1624 30509 268 0 2 333 16 21 13 0 47 8 21 68 63 0 77 388 1 0 262 0 6 25 0 5 15 chain 18501 chr5 180915260 + 65259226 65259455 AluSq2 311 + 85 308 131493 47 1 0 168 5 0 8 chain 30921 chr5 180915260 + 65268877 65269240 L1PA5 6144 + 5773 6143 82645 132 0 7 231 chain 126563 chr5 180915260 + 65272345 65273775 SVA_D 2077 - 0 1816 28926 676 11 8 4 0 1 62 1 79 58 0 1 29 0 269 140 0 40 449 chain 33689 chr5 180915260 + 65297638 65298116 L1PA8 5853 - 0 469 78107 93 1 0 17 2 1 37 29 27 70 2 0 44 1 0 75 1 0 94 2 1 10 chain 173290 chr5 180915260 + 65301379 65303376 L1PA4 6152 + 4137 6143 21678 7 0 4 206 0 4 277 3 6 663 0 4 295 0 1 395 7 0 8 0 6 19 6 0 111 chain 3619 chr5 180915260 + 65338363 65338423 Tigger4a 237 + 76 135 213372 25 7 0 14 0 6 14 chain 29322 chr5 180915260 + 65346061 65346372 AluYa5 310 - 0 310 87423 184 1 0 126 chain 544046 chr5 180915260 + 65353381 65359514 L1PA4 6152 - 1 6150 2202 356 0 17 338 4 0 132 0 4 604 2 1 1285 1 0 497 2 1 174 4 0 310 0 3 116 1 0 754 0 2 493 0 2 1060 chain 162347 chr5 180915260 + 65398101 65400655 L1PBa1 4058 + 1623 4017 23017 39 1 0 78 6 0 120 22 11 213 1 0 196 11 15 172 32 209 98 0 3 66 0 1 5 0 6 125 0 4 188 1 7 256 1 0 114 9 1 56 317 0 59 1 0 7 2 1 28 1 0 41 2 0 108 3 1 17 1 0 12 7 0 15 2 0 13 1 0 4 0 10 18 26 22 5 1 0 5 1 0 9 1 0 16 2 1 19 chain 518741 chr5 180915260 + 65401785 65407904 L1PA6 6164 + 0 6162 5298 370 28 35 95 11 10 57 1 0 220 0 17 444 1 0 586 0 1 51 1 2 1009 0 2 30 7 5 245 5 0 6 3 0 4 0 1 1170 0 12 180 2 12 110 3 5 635 1 5 559 1 0 284 chain 6621 chr5 180915260 + 65409384 65409467 L1MB2 1706 + 802 885 180295 83 chain 3962 chr5 180915260 + 65417239 65417342 MLT1C 463 + 74 171 207949 17 15 16 17 22 15 32 chain 18696 chr5 180915260 + 65427355 65427618 AluSp 311 + 61 293 130958 50 37 6 176 chain 19880 chr5 180915260 + 65432509 65432763 THE1D-int 1627 - 1328 1607 127550 27 5 30 222 chain 57444 chr5 180915260 + 65485480 65486947 L1MA3 4352 - 49 879 54269 15 1 0 6 1 0 22 2 0 81 1 0 22 0 2 41 0 3 7 44 14 58 1 0 4 0 1 31 311 7 296 306 0 103 4 7 110 chain 455139 chr5 180915260 + 65512625 65518515 L1PA8 5853 - 0 5802 8574 93 1 0 7 0 17 10 4 3 21 15 14 9 1 0 70 2 0 45 1 0 41 1 0 258 112 0 151 8 1 104 2 0 190 5 12 462 4 6 277 0 8 480 0 1 11 18 7 65 3 0 38 1 6 59 1 0 75 0 1 344 4 1 7 0 4 1188 0 1 394 0 6 85 2 0 511 5 6 63 12 14 37 6 0 7 2 8 39 10 0 287 0 4 63 1 55 79 55 15 4 0 1 6 1 0 11 2 0 20 chain 4706 chr5 180915260 + 65540757 65540815 MADE2 80 - 13 72 198424 29 0 1 29 chain 25984 chr5 180915260 + 65544190 65544546 L1PA8 5853 - 0 349 100078 84 10 9 19 2 1 63 1 0 11 0 1 57 2 0 46 1 0 47 2 0 11 chain 556469 chr5 180915260 + 65552647 65558835 L1PA3long 6157 - 0 6152 676 1830 33 0 2648 5 0 717 0 2 955 chain 2511 chr5 180915260 + 65582865 65582892 Charlie17a 212 - 155 182 233003 27 chain 11216 chr5 180915260 + 65599701 65599839 MER6A 605 + 369 507 155363 138 chain 12512 chr5 180915260 + 65602483 65602697 MER30 238 - 0 238 150199 72 1 2 34 4 23 21 26 12 40 0 18 16 chain 175465 chr5 180915260 + 65605789 65607831 L1PA6 6164 - 2 2073 21399 33 11 26 1110 1 8 306 1 0 315 0 2 123 0 6 142 chain 23287 chr5 180915260 + 65616984 65617405 L1MA5A 2387 + 1946 2306 114273 85 32 7 9 0 3 5 3 0 52 1 0 48 6 4 23 1 0 35 3 0 12 29 1 66 1 0 10 chain 23454 chr5 180915260 + 65626190 65626554 THE1C 375 + 0 375 113359 125 3 0 33 0 1 19 39 39 10 9 22 126 chain 5021 chr5 180915260 + 65636937 65636997 MLT2B1 522 - 80 140 194924 60 chain 13477 chr5 180915260 + 65657626 65657794 MER30 238 + 46 238 146423 68 0 24 100 chain 21013 chr5 180915260 + 65677791 65678562 L1PB2 3958 + 25 761 15232 26 1 0 5 18 14 14 5 0 20 9 4 32 2 0 17 25 21 49 6 3 46 23 24 160 16 0 133 4 8 160 chain 540286 chr5 180915260 + 65678588 65684593 L1PA3long 6157 - 5 6156 2776 199 0 11 1196 0 1 813 0 1 639 1 0 22 7 11 881 0 1 1473 0 128 622 0 1 152 chain 83588 chr5 180915260 + 65684594 65687661 L1PB2 3958 + 761 3838 15232 254 0 1 201 5 7 122 0 3 233 3 0 405 0 3 69 0 2 123 0 1 94 12 15 102 4 1 24 1 0 45 1 0 14 16 11 83 0 4 160 0 1 23 0 5 157 1 0 181 0 6 18 0 3 71 1 2 103 2 0 55 1 0 8 1 0 68 2 0 12 4 0 9 0 1 84 2 0 15 0 1 56 1 0 10 7 8 46 1 0 72 2 0 22 1 0 42 0 3 18 chain 505227 chr5 180915260 + 65695373 65701639 L1PA7 6471 - 7 6466 6516 147 8 9 176 0 1 382 0 1 123 0 7 399 1 0 110 10 8 87 0 1 79 0 2 178 1 9 466 0 2 65 0 2 488 3 0 116 1 0 66 0 3 20 10 11 251 0 1 4 1 0 218 5 11 372 25 8 260 0 1 425 0 1 927 1 0 296 0 10 198 26 197 115 36 36 170 chain 124714 chr5 180915260 + 65714775 65716677 L1PB1 5432 - 2 1827 29472 4 1 0 4 1 0 4 1 0 14 1 0 12 1 0 22 1 0 23 3 1 10 70 57 34 12 25 51 3 1 9 8 4 11 1 0 6 1 0 19 68 21 163 6 0 120 12 11 106 1 0 66 4 0 267 5 0 30 2 0 147 1 0 20 0 4 179 0 1 28 0 2 215 0 1 5 2 0 128 chain 18770 chr5 180915260 + 65720137 65720553 L1PB1 5432 - 10 399 130772 4 1 0 14 1 0 11 2 1 22 1 0 24 2 0 12 11 8 17 8 0 9 2 0 4 1 0 14 7 0 13 0 1 8 3 4 19 19 17 52 2 0 6 8 4 12 1 0 8 1 0 24 4 0 9 1 2 18 0 11 41 chain 537575 chr5 180915260 + 65740106 65746193 L1PA4 6152 - 1 6088 3219 259 1 0 72 2 3 523 1 0 629 1 0 313 0 4 1091 0 5 239 0 1 991 0 1 616 29 18 150 1 0 361 1 3 358 0 1 449 chain 26612 chr5 180915260 + 65749509 65749894 MSTA 426 + 2 426 97622 104 12 33 99 16 14 44 1 21 109 chain 16727 chr5 180915260 + 65752472 65752684 L1PA4 6152 - 0 218 136320 6 0 5 132 7 8 67 chain 36169 chr5 180915260 + 65761589 65762060 MER4A1 472 - 0 472 74678 88 4 1 42 0 2 227 0 1 9 0 2 70 2 1 29 chain 198386 chr5 180915260 + 65762072 65765015 MER4-int 2692 - 3 2689 19328 99 4 5 89 7 4 31 2 4 48 321 25 96 6 7 46 3 4 69 0 31 140 0 1 131 1 0 178 0 1 144 13 7 9 1 4 63 1 0 472 0 1 183 0 13 68 3 2 59 1 2 11 1 0 514 14 10 19 2 0 62 1 4 22 1 0 8 chain 35659 chr5 180915260 + 65769485 65770245 MER4A1 472 - 0 472 75323 277 11 12 55 291 2 8 1 0 6 0 1 111 chain 58649 chr5 180915260 + 65773736 65775127 MER4E1 777 + 5 768 53607 18 1 0 207 3 1 59 1 0 175 640 0 32 8 0 43 1 25 203 chain 161335 chr5 180915260 + 65776014 65777888 L1PA6 6164 - 6 1861 23147 54 21 0 87 1 2 457 0 2 233 0 1 7 1 0 112 2 1 899 chain 18749 chr5 180915260 + 65777915 65778200 L1P2 5180 + 30 312 130827 115 5 4 45 1 0 45 25 24 49 chain 37908 chr5 180915260 + 65787799 65788516 LTR8 732 - 21 732 72273 61 53 47 15 61 62 79 1 0 30 41 5 21 19 27 46 9 37 281 chain 63609 chr5 180915260 + 65792893 65793616 L1PA6 6164 - 202 927 51183 405 0 2 232 0 1 7 1 0 78 chain 90441 chr5 180915260 + 65798940 65800380 LTR12C 1709 + 0 1709 39491 42 38 42 172 37 48 32 0 43 85 7 9 80 4 0 20 3 0 31 3 1 103 1 201 162 0 47 97 44 13 35 0 2 50 56 58 90 5 4 154 16 15 73 chain 3999 chr5 180915260 + 65803106 65803178 ERVL-B4-int 2334 - 840 910 207405 22 11 9 39 chain 7135 chr5 180915260 + 65835663 65835781 MER5A 189 - 25 147 176512 66 24 28 28 chain 13489 chr5 180915260 + 65842176 65842360 MER30 238 - 6 197 146392 101 8 15 75 chain 43596 chr5 180915260 + 65859301 65859845 MER41A 554 + 0 554 64687 114 2 0 147 1 8 199 0 5 81 chain 2956 chr5 180915260 + 65872496 65872527 HY1 111 + 75 106 225942 31 chain 5051 chr5 180915260 + 65946193 65946256 MER63B 433 - 52 115 194628 63 chain 13951 chr5 180915260 + 65991288 65991467 L1PA10 4194 - 44 218 144750 34 3 0 40 2 0 100 chain 15911 chr5 180915260 + 66011333 66011508 L1PA4 6152 + 5976 6151 138624 175 chain 12947 chr5 180915260 + 66015387 66015554 L1PA8 5853 - 0 165 148442 93 1 0 19 2 1 52 chain 6382 chr5 180915260 + 66037239 66037315 MER58A 224 - 18 94 182171 76 chain 22346 chr5 180915260 + 66044340 66044605 AluSc 308 - 34 298 118718 110 1 0 154 chain 352372 chr5 180915260 + 66046111 66050047 L1HS 6032 + 0 3934 11541 67 5 6 1038 0 2 1466 6 0 436 0 1 918 chain 31526 chr5 180915260 + 66063399 66063856 MLT2A1 477 - 12 477 81602 36 14 0 9 3 35 123 8 0 82 0 1 9 15 12 158 chain 49869 chr5 180915260 + 66076143 66076788 LTR12 884 - 0 884 59104 126 1 9 19 0 103 250 2 0 34 0 132 178 13 11 22 chain 28717 chr5 180915260 + 66103042 66103345 AluYb8 318 + 0 303 90265 303 chain 15171 chr5 180915260 + 66105576 66105757 AluSc5 308 - 23 204 140851 181 chain 12850 chr5 180915260 + 66111977 66112167 MER30 238 + 37 238 148844 72 7 18 25 0 6 7 6 0 73 chain 54693 chr5 180915260 + 66140964 66141614 L1PA6 6164 - 15 670 55909 286 7 11 208 0 1 149 chain 10093 chr5 180915260 + 66235547 66235745 Tigger1 2417 - 5 176 160123 18 48 21 27 1 3 87 2 0 15 chain 197914 chr5 180915260 + 66421081 66423432 L1PA7 6471 - 1 2371 19364 18 1 0 313 1 0 5 1 2 398 0 9 104 1 0 393 0 2 22 1 0 353 0 1 199 0 10 541 chain 12390 chr5 180915260 + 66428012 66428166 L1PA7 6471 - 10 162 150665 77 3 1 74 chain 10971 chr5 180915260 + 66434048 66434216 Tigger4 2445 - 462 634 156317 74 0 2 5 24 26 65 chain 5216 chr5 180915260 + 66434590 66434657 Tigger4b 360 - 250 334 192873 52 0 17 15 chain 21589 chr5 180915260 + 66468609 66468852 L1PA3long 6157 - 855 1100 121814 105 0 2 138 chain 77008 chr5 180915260 + 66468852 66469700 L1PA3long 6157 + 5303 6157 44962 834 0 6 14 chain 21391 chr5 180915260 + 66483755 66484012 AluSc5 308 + 38 295 122538 257 chain 22534 chr5 180915260 + 66506051 66506338 AluY 311 + 15 294 117872 118 14 10 139 4 0 12 chain 490006 chr5 180915260 + 66520577 66526154 L1PA4 6152 - 16 6149 7365 132 4 11 4 0 1 170 0 1 1352 0 4 542 0 1 454 4 546 768 1 0 764 0 1 1382 chain 81272 chr5 180915260 + 66545691 66546590 L1PA3long 6157 - 1 899 43055 19 1 0 879 chain 136297 chr5 180915260 + 66546608 66548099 L1PA3long 6157 + 3743 5233 26783 1486 1 0 4 chain 20125 chr5 180915260 + 66614966 66615231 LTR12C 1709 + 691 1203 126754 146 1 0 33 0 248 85 chain 2776 chr5 180915260 + 66615232 66615264 LTR12C 1709 + 837 869 229080 32 chain 18009 chr5 180915260 + 66720500 66720796 AluY 311 + 34 286 132835 29 4 2 42 42 3 13 7 4 159 chain 6043 chr5 180915260 + 66725650 66725744 L1MA3 4352 - 46 136 184864 18 1 0 5 2 1 24 2 0 42 chain 33375 chr5 180915260 + 66733074 66733466 THE1B-int 1605 + 1207 1599 78610 135 1 0 4 0 1 252 chain 5161 chr5 180915260 + 66760354 66760434 MADE1 96 - 0 96 193435 33 8 24 39 chain 34651 chr5 180915260 + 66780119 66780537 L1PA5 6144 + 5724 6144 76689 255 5 12 15 6 0 85 0 1 52 chain 26900 chr5 180915260 + 66786331 66786686 THE1A 353 - 0 353 96629 111 1 2 30 2 1 11 1 0 87 1 0 111 chain 21392 chr5 180915260 + 66802860 66803124 AluSg 306 + 46 306 122534 236 4 0 24 chain 38829 chr5 180915260 + 66819341 66819789 L1PA7 6471 - 2 450 70976 448 chain 10035 chr5 180915260 + 66820957 66821074 L1P1 4361 - 45 161 160403 11 1 0 105 chain 7024 chr5 180915260 + 66821074 66821157 L1PA5 6144 + 6061 6144 177296 83 chain 204027 chr5 180915260 + 66835542 66837790 L1PA3long 6157 + 3912 6157 18923 807 0 1 1042 4 0 395 chain 27813 chr5 180915260 + 66851624 66851997 MLT2A1 477 - 96 477 93653 208 7 11 18 0 1 23 0 1 69 4 6 44 chain 6537 chr5 180915260 + 66858424 66858527 MER47A 366 + 244 347 180949 35 13 12 5 0 1 50 chain 265694 chr5 180915260 + 66860644 66863625 L1PA4 6152 - 1 2985 15406 259 1 0 769 0 2 436 0 1 483 0 1 1033 chain 3180 chr5 180915260 + 66892781 66892816 MADE1 96 - 61 96 221342 35 chain 525339 chr5 180915260 + 66894167 66900290 L1PA5 6144 - 1 6141 4650 152 1 2 30 1 2 497 0 3 61 18 18 77 0 4 944 0 4 1042 1 0 10 0 1 4 1 0 477 0 1 410 0 1 101 0 1 135 0 1 1262 7 8 892 chain 402187 chr5 180915260 + 66922798 66927656 L1PA7 6471 - 10 5120 10020 84 8 0 8 0 8 52 2 0 219 6 12 457 1 0 178 0 1 149 0 1 572 0 2 24 0 1 21 0 4 52 0 1 250 0 1 162 0 1 256 1 180 102 0 2 92 16 20 121 5 6 322 0 4 294 1 48 43 0 3 76 3 1 50 0 1 551 1 0 292 1 0 301 1 0 4 0 1 80 chain 28440 chr5 180915260 + 66928230 66928528 AluYa5 310 - 12 310 91421 298 chain 27218 chr5 180915260 + 66930282 66930638 THE1B 368 + 0 368 95527 44 0 15 113 1 0 16 6 4 102 1 0 5 0 1 68 chain 522942 chr5 180915260 + 66956703 66962791 L1PA5 6144 - 0 6134 4870 338 0 1 117 0 12 351 1 0 30 0 4 38 0 1 290 0 1 327 0 5 62 0 34 838 0 1 11 3 1 79 1 0 4 0 1 45 0 1 926 22 9 70 2 1 1630 0 2 483 0 1 420 chain 27170 chr5 180915260 + 66964156 66964512 THE1D-int 1627 + 0 358 95697 10 4 3 116 4 6 159 0 1 63 chain 9788 chr5 180915260 + 66964525 66964645 L1PA7 6471 - 8 128 161660 9 0 1 65 1 0 45 chain 7345 chr5 180915260 + 66979302 66979401 LTR19B 566 + 466 566 175129 46 1 2 52 chain 16246 chr5 180915260 + 66989417 66989644 L1PA8 5853 + 5595 5816 137628 13 2 0 74 1 0 12 1 0 41 7 6 19 1 0 56 chain 41230 chr5 180915260 + 66999509 67000000 L1P1 4361 + 1 493 67607 95 1 2 395 chain 501329 chr5 180915260 + 67000000 67005964 L1PA4 6152 + 499 6152 6765 1481 0 1 3202 316 0 115 0 4 850 chain 16132 chr5 180915260 + 67012031 67012221 L1PA8A 6298 + 6097 6287 137962 190 chain 29405 chr5 180915260 + 67013823 67014148 L1PA4 6152 - 6 331 87040 325 chain 157663 chr5 180915260 + 67017961 67019697 L1PA3long 6157 - 2 1738 23640 1736 chain 546534 chr5 180915260 + 67032725 67038759 L1PA2 6032 - 1 6032 1879 18 3 0 1170 2 0 882 4 6 3699 1 0 183 1 2 71 chain 18404 chr5 180915260 + 67040649 67040887 L1PA4 6152 + 5911 6143 131766 90 4 5 16 10 3 118 chain 75611 chr5 180915260 + 67041773 67042847 MER11A 1151 - 4 1151 45706 11 0 1 30 0 7 110 6 7 60 0 1 28 24 6 24 44 27 145 7 8 143 5 6 89 0 1 149 4 0 40 4 0 20 0 4 70 1 100 60 chain 24578 chr5 180915260 + 67044300 67044711 LTR7B 505 + 0 491 107093 108 0 10 46 51 31 19 1 89 62 1 0 31 0 1 10 1 3 31 14 13 16 0 1 20 chain 537073 chr5 180915260 + 67053393 67059516 L1PA4 6152 + 13 6143 3303 481 0 2 197 0 1 69 4 0 380 0 2 1056 0 2 207 0 1 759 0 1 1173 0 2 319 1 0 911 1 0 146 0 2 419 chain 21429 chr5 180915260 + 67074514 67074740 AluYa5 310 - 10 236 122412 226 chain 546203 chr5 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15 1 0 44 1 0 16 2 1 53 2 0 8 7 3 10 5 4 4 1 0 24 279 11 12 1 0 250 8 1 103 0 1 107 0 2 132 0 12 267 1 0 213 chain 302147 chr5 180915260 + 67161840 67165267 L1PA5 6144 - 15 3473 13313 661 0 1 5 0 7 129 1 0 603 0 1 86 0 5 965 0 2 398 1 16 330 0 1 248 chain 551561 chr5 180915260 + 67185432 67191456 L1PA2 6032 + 0 6032 1246 256 1 0 662 1 0 365 0 9 3161 0 1 1578 chain 6531 chr5 180915260 + 67191914 67191986 THE1C-int 1605 - 7 79 181004 72 chain 2183 chr5 180915260 + 67202543 67202566 L1PA4 6152 + 5855 5878 236717 23 chain 23410 chr5 180915260 + 67202566 67202829 L1PA4 6152 + 5888 6151 113597 263 chain 4603 chr5 180915260 + 67208511 67208734 MER74B 573 - 480 571 199586 10 125 0 11 18 13 46 2 0 11 chain 65260 chr5 180915260 + 67215182 67216143 L1PA15 4387 - 21 968 50439 11 1 0 27 5 1 12 3 1 44 6 3 43 8 8 9 4 0 22 1 0 24 1 0 22 10 9 26 1 0 119 1 0 53 1 0 40 2 1 76 0 2 92 0 2 94 1 4 202 chain 173827 chr5 180915260 + 67224438 67226383 L1PA4 6152 + 4197 6152 21609 1107 0 4 77 0 8 85 0 1 517 0 1 149 4 0 6 chain 5717 chr5 180915260 + 67234563 67234643 MER33 330 - 98 181 187958 52 0 3 28 chain 11779 chr5 180915260 + 67268740 67268878 MSTA 426 + 270 408 153133 138 chain 55121 chr5 180915260 + 67277882 67278513 L1PA5 6144 + 5511 6144 55630 425 0 2 206 chain 31707 chr5 180915260 + 67279461 67279861 MER57B1 401 + 0 400 81319 400 chain 192540 chr5 180915260 + 67303629 67305718 L1PA2 6032 - 0 2089 19812 154 0 5 7 5 0 1923 chain 118972 chr5 180915260 + 67315370 67316795 LTR12C 1709 - 0 1709 31426 129 0 2 204 1 3 38 0 1 83 1 0 21 0 4 106 4 2 4 1 0 36 0 2 93 0 278 440 1 0 263 chain 12982 chr5 180915260 + 67339820 67340003 MER30 238 + 46 238 148301 60 4 16 73 3 0 43 chain 42905 chr5 180915260 + 67343805 67344316 MER9a1 513 - 0 513 65532 64 1 3 446 chain 392084 chr5 180915260 + 67357100 67361661 L1PA6 6164 + 1603 6149 10391 131 0 1 590 0 1 299 0 1 318 11 0 361 0 1 391 5 0 155 0 1 425 10 4 1109 0 2 756 chain 525775 chr5 180915260 + 67398064 67404554 L1PA6 6164 + 3 6156 4606 157 2 1 75 0 2 152 14 15 113 0 2 47 1 0 671 0 1 1093 0 2 430 0 2 419 4 0 4 0 1 890 335 0 118 11 3 1154 0 2 653 2 1 145 chain 100569 chr5 180915260 + 67419218 67420825 L1PA13 3608 + 86 3440 36612 4 1 0 19 6 4 21 24 21 8 1 0 14 3 0 24 24 17 61 15 13 110 0 3 11 1 0 12 2 1 15 0 3 5 5 0 10 6 2 15 1 0 15 39 34 6 1 0 18 0 1 78 2 0 408 2 1 60 0 9 131 6 5 64 2 1781 42 1 0 12 0 1 14 2 1 114 2 0 61 1 0 56 1 0 5 2 0 44 chain 13114 chr5 180915260 + 67421198 67421559 L1PREC2 3366 + 2716 3051 147791 36 4 2 45 11 10 41 1 0 4 3 0 13 122 104 35 2 1 44 chain 38206 chr5 180915260 + 67434897 67435412 MLT2A2 560 - 0 560 71830 97 7 8 38 0 11 60 10 44 122 1 0 180 chain 41913 chr5 180915260 + 67439451 67439926 L1PA7 6471 + 5986 6461 66740 475 chain 36735 chr5 180915260 + 67453436 67453907 L1PA8 5853 + 5387 5853 73905 177 1 0 44 2 0 69 4 3 23 0 1 36 2 1 19 2 1 92 chain 28468 chr5 180915260 + 67471923 67472851 Tigger3c 601 + 54 577 91312 47 158 74 129 1 0 7 353 20 28 2 12 157 11 14 35 chain 26684 chr5 180915260 + 67473830 67474134 AluYk4 311 + 0 304 97369 304 chain 23894 chr5 180915260 + 67482686 67482961 AluSg7 307 - 33 307 110934 141 2 1 132 chain 107977 chr5 180915260 + 67506034 67507479 THE1B-int 1605 - 0 1587 34727 196 1 0 565 4 6 89 19 128 121 0 3 28 12 37 124 5 6 47 11 14 223 chain 18860 chr5 180915260 + 67590592 67590801 L1PA2 6032 + 5821 6032 130487 31 0 2 178 chain 134588 chr5 180915260 + 67618932 67620426 SVA_D 2077 - 1 2077 27099 638 0 535 138 0 40 444 0 1 250 1 7 23 chain 16104 chr5 180915260 + 67651388 67651643 MER44A 345 - 0 267 138043 12 1 0 6 0 15 15 4 0 176 18 20 23 chain 18932 chr5 180915260 + 67655017 67655231 L1PA7 6471 - 2 216 130285 214 chain 12779 chr5 180915260 + 67676641 67676828 MER2 342 - 64 251 149138 50 11 13 99 2 0 25 chain 116406 chr5 180915260 + 67793010 67794580 THE1B-int 1605 + 0 1593 32311 430 1 26 191 10 7 463 72 12 11 0 60 140 0 1 252 chain 26515 chr5 180915260 + 67794591 67794957 THE1B 368 + 0 368 97989 15 27 30 127 3 2 194 chain 379926 chr5 180915260 + 67861756 67867531 L1PB1 5432 + 31 5398 10755 120 7 0 7 7 14 134 18 17 109 26 39 291 10 12 141 0 1 4 1 3 57 0 19 384 14 20 7 1 0 969 0 4 74 0 3 33 101 17 222 0 1 4 1 0 37 35 59 9 2 0 295 0 1 67 0 6 316 8 0 201 0 4 42 7 8 202 1 0 637 1 0 5 2 0 117 0 1 68 2 1 115 320 0 168 116 64 8 2 0 52 24 22 39 1 0 21 16 6 15 39 34 13 1 0 22 1 0 6 chain 22662 chr5 180915260 + 67867889 67868177 AluSp 311 - 14 301 117259 15 1 0 5 4 5 72 0 1 67 2 0 122 chain 46219 chr5 180915260 + 67885879 67886492 HSMAR1 1287 + 675 1287 61833 58 5 4 176 0 3 5 21 18 348 chain 83948 chr5 180915260 + 67895439 67896398 L1PA3long 6157 - 0 954 41930 267 16 8 57 0 1 252 1 2 340 0 1 26 chain 78939 chr5 180915260 + 67897092 67898139 MER11C 1089 + 0 1063 44090 246 0 9 58 0 4 68 1 0 102 0 1 46 50 49 105 0 4 7 1 0 38 0 1 127 0 1 54 14 13 130 chain 133528 chr5 180915260 + 67918627 67920136 L1PA5 6144 - 2341 3851 27314 1434 1 2 74 chain 201175 chr5 180915260 + 67920136 67922414 L1PA5 6144 + 3860 6139 19125 833 0 1 438 0 1 249 1 0 757 chain 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54 0 1 54 chain 31614 chr5 180915260 + 68110963 68111413 MLT2A1 477 + 0 477 81460 16 1 5 125 22 24 215 4 0 14 12 37 41 chain 6836 chr5 180915260 + 68114734 68114831 LTR33 499 - 0 96 178685 46 5 4 46 chain 19302 chr5 180915260 + 68129640 68129854 AluYk4 311 - 1 215 129235 214 chain 49459 chr5 180915260 + 68146395 68147240 Tigger2 2703 + 0 817 59419 142 21 20 106 70 72 8 1 0 59 3 4 28 6 5 120 2 1 198 4 3 14 42 16 21 chain 19876 chr5 180915260 + 68147258 68147496 L1PA5 6144 - 3 244 127567 12 0 3 226 chain 83899 chr5 180915260 + 68151294 68152508 L1PREC2 3366 - 415 1602 41951 29 2 0 16 8 4 15 28 20 13 3 0 4 1 0 20 0 1 23 1 0 32 1 0 22 2 0 31 0 4 6 10 7 62 2 0 81 0 4 96 9 0 122 19 20 403 1 0 152 chain 529001 chr5 180915260 + 68160800 68167260 L1PA7 6471 + 19 6461 4301 121 28 13 257 16 19 45 2 0 750 0 1 136 6 2 22 8 11 428 0 4 318 0 1 433 0 10 42 7 0 453 0 3 227 0 1 185 2 0 44 1 0 78 2 0 424 2 1 80 0 1 206 7 8 278 1 0 81 0 1 385 15 3 530 1 0 515 0 1 324 chain 16145 chr5 180915260 + 68170004 68170205 L1PA7 6471 - 6 204 137913 6 2 0 145 1 0 47 chain 24202 chr5 180915260 + 68172646 68172900 AluYa5 310 + 35 289 109201 254 chain 166939 chr5 180915260 + 68203936 68205790 L1PA4 6152 - 0 1852 22404 75 6 2 286 0 2 1487 chain 32777 chr5 180915260 + 68215687 68217858 MER50 708 - 23 708 79570 123 10 9 34 16 17 19 1 0 23 80 79 45 39 47 7 3 0 104 242 12 55 0 2 34 1266 3 18 6 8 46 chain 14515 chr5 180915260 + 68217151 68217618 LTR12C 1709 + 773 1541 142838 64 1 0 46 0 119 43 1 33 6 0 9 16 247 389 43 chain 3949 chr5 180915260 + 68219394 68219444 LTR32 486 + 23 74 208144 32 0 1 18 chain 9369 chr5 180915260 + 68236046 68236155 L1PA7 6471 + 6347 6456 163715 109 chain 20879 chr5 180915260 + 68255386 68255629 L1PA5 6144 + 5903 6144 124363 229 3 1 11 chain 271917 chr5 180915260 + 68272020 68276244 L1MA1 4479 + 228 4162 15088 42 10 8 297 6 5 120 0 4 81 9 1 148 51 123 181 1 0 55 0 3 63 0 6 99 0 1 213 0 2 244 12 7 37 0 4 73 0 1 35 0 2 7 0 1 5 307 2 68 7 0 7 0 4 353 5 3 69 1 0 18 12 3 45 1 0 102 3 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68385801 HERVE_a-int 7009 - 2 1608 32648 8 1 0 8 3 1 19 37 29 15 4 2 34 2 0 24 1 0 13 3 1 6 1 0 31 2 1 25 3 1 54 3 0 26 4 0 7 1 0 58 7 5 27 1 0 4 1 0 15 32 0 28 5 4 22 1 0 36 1 0 7 8 5 16 1 0 10 1 0 32 1 0 38 9 8 134 2 0 80 1 0 14 1 0 18 2 0 30 0 2 25 1 0 3 1 0 15 1 0 102 2 0 256 1 0 15 1 0 86 1 0 28 1 0 36 1 0 7 1 0 74 1 0 9 1 0 26 1 0 26 chain 12471 chr5 180915260 + 68386861 68387052 MER41A 554 - 66 554 150373 15 0 5 40 6 0 11 2 1 9 3 302 105 chain 30182 chr5 180915260 + 68387059 68387474 LTR46 455 + 0 411 84246 34 5 4 46 6 5 97 0 1 6 12 10 105 1 0 103 chain 17798 chr5 180915260 + 68387804 68388354 MER41B 635 + 0 635 133418 101 302 385 106 0 4 27 2 0 12 chain 9915 chr5 180915260 + 68396319 68396454 FLAM_C 140 + 4 138 160993 115 3 2 17 chain 36996 chr5 180915260 + 68402581 68403519 Tigger3b 1229 - 538 1201 73515 19 0 4 44 0 2 31 313 37 24 2 6 120 0 3 72 60 13 18 1 8 82 6 9 67 14 41 41 2 0 22 chain 19975 chr5 180915260 + 68419731 68419957 AluY 311 + 73 300 127222 59 0 1 167 chain 3807 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24259 chr5 180915260 + 68856590 68856872 AluSc 308 - 20 298 108894 9 4 0 269 chain 16426 chr5 180915260 + 68860214 68860447 L1PA16 3655 + 2981 3200 137133 58 18 5 8 1 0 148 chain 8020 chr5 180915260 + 68871544 68871637 Tigger1 2417 + 871 964 170938 93 chain 5873 chr5 180915260 + 68882443 68882525 MER63B 433 - 38 118 186446 5 2 0 75 chain 3739 chr5 180915260 + 68911345 68911420 MER65D 500 - 118 191 211345 21 1 2 14 11 8 28 chain 37085 chr5 180915260 + 68968044 68968463 L1PA3long 6157 - 12 432 73409 5 1 0 255 0 2 158 chain 106438 chr5 180915260 + 68968463 68969622 L1PA3long 6157 + 4567 5726 35141 1159 chain 66145 chr5 180915260 + 68979697 68980428 L1PA3long 6157 - 0 731 50027 731 chain 118693 chr5 180915260 + 68980429 68981740 L1PA3long 6157 + 4097 5408 31535 1311 chain 202078 chr5 180915260 + 68988601 68990988 L1PA6 6164 - 2 2410 19060 9 0 2 128 1 2 697 1 5 337 0 1 44 0 9 257 1 0 16 0 5 896 chain 3322 chr5 180915260 + 68990995 68991038 Tigger5 388 + 300 343 218544 43 chain 115829 chr5 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5 chain 7287 chr5 180915260 + 69200047 69200206 THE1B 368 - 199 366 175539 52 11 12 10 30 40 6 3 0 47 chain 26695 chr5 180915260 + 69216099 69216399 L1PA3long 6157 - 0 300 97340 300 chain 5197 chr5 180915260 + 69239920 69239982 MER44D 709 - 177 239 193068 62 chain 12866 chr5 180915260 + 69325291 69325447 L1PA6 6164 - 2 155 148771 13 4 1 139 chain 23684 chr5 180915260 + 69331212 69331498 AluSp 311 - 16 311 112131 95 5 14 186 chain 13575 chr5 180915260 + 69334475 69334681 MER75B 242 - 24 242 146074 42 23 30 18 3 8 120 chain 30288 chr5 180915260 + 69335085 69335461 THE1C 375 - 0 375 83968 25 1 0 163 1 2 161 1 0 24 chain 27664 chr5 180915260 + 69367329 69367630 AluYc3 301 - 0 301 94170 301 chain 260906 chr5 180915260 + 69376325 69379168 L1PA3long 6157 - 628 3483 15647 385 1 8 209 0 1 1731 0 4 517 chain 54876 chr5 180915260 + 69379183 69379791 L1PA3long 6157 + 5551 6157 55787 601 2 0 5 chain 10806 chr5 180915260 + 69384110 69384246 MSTA-int 1630 + 0 136 156967 136 chain 4496 chr5 180915260 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4922 5404 91665 32 1 4 115 4 0 6 133 26 9 3 0 24 1 0 8 1 0 12 5 1 8 2 0 53 3 2 14 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 17271 chr5 180915260 + 69613125 69613305 AluYa5 310 + 130 310 134861 180 chain 25566 chr5 180915260 + 69616605 69617046 L1PA15 4387 - 61 489 101901 11 3 1 31 0 1 12 6 3 50 1 0 10 4 0 22 1 0 25 41 40 15 6 5 168 1 0 34 chain 22647 chr5 180915260 + 69629145 69629408 L1PA5 6144 - 291 553 117346 66 1 0 196 chain 25040 chr5 180915260 + 69629408 69629706 L1PA5 6144 + 5844 6142 104595 298 chain 29117 chr5 180915260 + 69636539 69636843 AluYa5 310 - 6 310 88470 304 chain 64779 chr5 180915260 + 69644015 69644764 L1PA6 6164 - 11 760 50669 749 chain 31056 chr5 180915260 + 69654881 69655300 L1PA8 5853 - 0 411 82428 92 2 1 19 2 1 47 1 0 13 2 1 71 3 1 45 1 0 105 1 0 15 chain 16517 chr5 180915260 + 69715361 69715595 L1PA16 3655 + 2980 3200 136867 59 18 5 8 1 0 148 chain 8020 chr5 180915260 + 69726687 69726780 Tigger1 2417 + 871 964 170937 93 chain 5873 chr5 180915260 + 69737605 69737687 MER63B 433 - 38 118 186445 5 2 0 75 chain 3739 chr5 180915260 + 69766486 69766561 MER65D 500 - 118 191 211344 21 1 2 14 11 8 28 chain 96553 chr5 180915260 + 69822465 69824010 THE1B-int 1605 + 13 1599 37677 246 0 1 14 0 6 19 70 9 83 5 69 30 17 17 29 9 16 109 15 16 17 7 13 120 11 12 38 95 80 193 0 14 78 0 6 58 0 5 88 6 7 113 0 5 75 chain 37868 chr5 180915260 + 69844146 69844572 L1PA3long 6157 - 8 432 72323 4 1 0 5 1 0 415 chain 105969 chr5 180915260 + 69844572 69845731 L1PA3long 6157 + 4567 5726 35263 1159 chain 39024 chr5 180915260 + 69855772 69856204 L1PA3long 6157 - 0 432 70707 432 chain 202033 chr5 180915260 + 69863905 69866291 L1PA6 6164 - 2 2410 19062 9 0 2 128 1 2 697 1 5 337 0 1 44 0 9 273 0 5 896 chain 3322 chr5 180915260 + 69866298 69866341 Tigger5 388 + 300 343 218542 43 chain 113446 chr5 180915260 + 69903286 69904810 L1PA8A 6298 + 4780 6289 33238 144 14 18 77 0 1 57 0 1 21 5 7 163 3 0 58 0 1 39 21 1 121 2 1 81 1 2 289 23 23 121 1 0 283 chain 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3 12 0 1 31 3 1 11 chain 17271 chr5 180915260 + 69988461 69988641 AluYa5 310 - 0 180 134863 180 chain 28390 chr5 180915260 + 69988880 69989491 L1PB1 5432 - 28 510 91616 13 1 0 21 1 0 24 2 0 15 7 4 19 24 12 15 1 0 45 1 0 14 3 2 53 2 0 8 5 1 11 1 0 9 1 0 24 3 0 9 121 26 6 4 0 115 1 4 32 chain 113435 chr5 180915260 + 69992529 69994054 L1PA8A 6298 - 9 1518 33242 120 18 18 150 1 0 428 1 2 81 2 1 121 22 1 41 0 1 59 3 0 160 5 7 21 0 1 57 0 1 77 14 18 144 chain 201936 chr5 180915260 + 70031043 70033430 L1PA6 6164 + 3754 6162 19069 898 0 5 16 1 0 255 0 9 44 0 1 337 1 5 697 1 2 128 0 2 9 chain 118571 chr5 180915260 + 70040291 70041602 L1PA3long 6157 - 749 2060 31596 1311 chain 66145 chr5 180915260 + 70041603 70042334 L1PA3long 6157 + 5426 6157 50026 731 chain 106344 chr5 180915260 + 70052383 70053542 L1PA3long 6157 - 431 1590 35170 1159 chain 37805 chr5 180915260 + 70053542 70053963 L1PA3long 6157 + 5725 6145 72408 415 1 0 5 chain 7287 chr5 180915260 + 70075113 70075272 THE1B 368 - 199 366 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chain 4496 chr5 180915260 + 70264127 70264181 LTR41 747 + 679 733 200822 54 chain 24816 chr5 180915260 + 70306102 70306393 AluYk4 311 - 19 311 105799 229 0 1 62 chain 23680 chr5 180915260 + 70336511 70336796 AluSp 311 - 16 301 112152 285 chain 8020 chr5 180915260 + 70347901 70347994 Tigger1 2417 - 1453 1546 170939 93 chain 16517 chr5 180915260 + 70359103 70359337 L1PA16 3655 - 455 675 136868 147 1 0 9 18 5 59 chain 14413 chr5 180915260 + 70387327 70387557 Tigger3b 1229 + 648 925 143174 18 0 5 23 0 8 7 8 27 8 0 4 22 8 7 21 0 2 13 0 10 102 chain 13958 chr5 180915260 + 70392146 70392327 MSTA 426 + 230 416 144715 135 1 6 45 chain 4496 chr5 180915260 + 70396900 70396954 LTR41 747 + 679 733 200821 54 chain 26695 chr5 180915260 + 70493767 70494067 L1PA3long 6157 + 5857 6157 97338 300 chain 98604 chr5 180915260 + 70508403 70509948 THE1B-int 1605 + 13 1599 37124 246 0 1 14 0 6 19 70 9 83 5 69 76 9 16 109 15 16 17 7 13 120 11 12 38 95 80 193 0 14 78 0 6 58 0 5 88 6 7 113 0 5 75 chain 37805 chr5 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L1PA5 6144 - 291 553 116279 66 1 0 196 chain 25021 chr5 180915260 + 70628731 70629025 L1PA5 6144 + 5844 6138 104680 294 chain 28995 chr5 180915260 + 70635965 70636269 AluYa5 310 - 6 310 89010 304 chain 64596 chr5 180915260 + 70643446 70644194 L1PA6 6164 - 11 759 50750 748 chain 31056 chr5 180915260 + 70654321 70654740 L1PA8 5853 - 0 411 82427 92 2 1 19 2 1 52 1 0 8 2 1 71 3 1 45 1 0 105 1 0 15 chain 60427 chr5 180915260 + 70693391 70694160 LTR17 781 - 9 781 52624 116 1 2 262 1 0 65 0 1 17 10 0 28 0 2 135 0 1 15 11 20 108 chain 43284 chr5 180915260 + 70694880 70695441 MER41A 554 + 0 554 65074 92 0 1 244 10 1 190 0 1 25 chain 19594 chr5 180915260 + 70769516 70769732 L1PA4 6152 - 9 225 128401 216 chain 4551 chr5 180915260 + 70772145 70772200 MER21A 919 - 350 405 200203 55 chain 131906 chr5 180915260 + 70820460 70822079 SVA_D 2077 - 3 1839 27655 6 5 0 623 1 0 44 4 0 13 24 0 4 1 0 76 0 1 8 11 37 4 0 1 76 0 1 8 10 37 4 0 1 92 0 2 49 0 1 32 0 36 157 3 0 10 22 181 332 chain 153474 chr5 180915260 + 70846952 70848682 SVA_D 2077 - 12 2061 24161 226 0 1 212 0 1 27 1 2 92 0 188 229 0 51 78 6 43 421 0 40 438 chain 30493 chr5 180915260 + 70867752 70868143 LTR3A 482 + 26 420 83447 96 0 1 37 0 1 193 0 1 34 0 1 8 6 5 17 chain 10586 chr5 180915260 + 70868261 70868739 HERVK3-int 3053 + 39 436 157891 20 99 72 5 1 0 13 14 0 45 132 102 17 2 1 47 29 26 18 5 0 31 chain 33515 chr5 180915260 + 70873776 70874228 LTR3A 482 + 26 482 78383 95 0 2 37 0 1 193 0 1 34 0 1 8 6 5 17 19 18 4 0 1 39 chain 20355 chr5 180915260 + 70875781 70876015 AluSc5 308 - 74 308 126049 234 chain 3421 chr5 180915260 + 70882593 70882636 MER51A 677 - 254 297 216752 43 chain 553519 chr5 180915260 + 70900410 70906420 L1PA2 6032 - 0 6031 1004 15 0 3 854 0 4 430 0 4 1859 0 1 959 1 0 46 0 9 172 0 1 1127 0 1 80 1 0 466 chain 8823 chr5 180915260 + 70918658 70918752 AluYh9 303 + 7 101 166541 94 chain 28085 chr5 180915260 + 70927365 70927666 AluYb8 318 - 10 318 92697 57 0 7 244 chain 25370 chr5 180915260 + 70964244 70964544 AluY 311 + 3 302 102830 129 0 1 162 2 0 7 chain 215398 chr5 180915260 + 70968040 70972551 L1MA3 4352 - 0 3898 18139 22 6 2 14 1 0 26 1 0 6 1 0 24 2 0 77 1 5 55 45 28 34 0 1 153 0 1 27 0 6 62 0 1 95 6 7 164 1 0 90 0 4 75 0 3 4 0 1 117 1 0 4 2 3 30 0 1 162 1 0 113 0 2 10 8 9 332 1 0 240 4 5 11 14 12 37 0 3 221 13 5 37 1 0 94 0 1 131 1443 818 92 1 0 7 1 0 91 13 36 287 chain 399510 chr5 180915260 + 70980485 70985873 L1PB1 5432 + 33 5424 10115 13 17 0 7 4 21 192 12 13 120 2 0 7 0 2 73 1 2 320 0 3 441 0 4 51 0 1 86 16 8 236 0 1 99 3 14 347 0 1 399 1 0 59 0 1 206 0 1 22 1 2 101 0 3 137 4 5 117 1 0 52 0 6 279 2 3 5 1 0 319 9 8 26 0 1 50 0 1 36 0 3 19 1 0 97 0 1 157 1 0 64 1 0 206 0 1 4 1 0 75 0 1 45 1 5 9 0 1 159 79 60 56 0 2 36 13 1 167 1 30 14 1 0 10 5 1 9 2 0 53 2 1 16 1 0 43 1 0 16 13 1 30 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 49060 chr5 180915260 + 71007938 71008851 L1PA7 6471 - 4 606 59704 8 6 0 160 7 9 142 314 0 164 0 7 112 chain 125344 chr5 180915260 + 71055026 71056400 L1PA4 6152 - 1 1376 29107 1344 0 1 30 chain 154772 chr5 180915260 + 71056400 71058109 L1PA4 6152 + 3073 4782 24006 1709 chain 351916 chr5 180915260 + 71085703 71095946 L1PA7 6471 + 75 6470 11550 197 5 6 403 39 40 104 0 29 33 0 4 307 7 4 6 0 3 384 0 1 163 3 5 755 0 2 120 42 1 66 0 3 104 5702 1846 13 0 2 84 0 1 841 0 4 15 1 0 89 12 11 598 3 4 147 chain 149931 chr5 180915260 + 71089137 71091085 SVA_A 1864 - 0 1838 24618 582 2 0 77 1 35 25 1 0 11 3 0 37 3 0 39 4 0 35 3 0 109 80 1 26 1 0 124 0 2 33 18 15 26 3 0 32 6 3 26 40 0 110 1 0 490 chain 2518 chr5 180915260 + 71090069 71090112 SVA_A 1864 - 1023 1100 61698 2 3 0 14 4 41 20 chain 269925 chr5 180915260 + 71091135 71094142 L1PA4 6152 - 662 3669 15183 3007 chain 5347 chr5 180915260 + 71127145 71127224 MADE1 96 - 0 96 191570 30 6 23 43 chain 156668 chr5 180915260 + 71141625 71143803 L1PB1 5432 - 40 2128 23777 22 1 0 24 2 0 15 2 0 4 1 0 19 17 12 16 1 0 59 2 1 53 2 0 8 6 3 10 1 0 12 1 0 20 96 11 160 7 19 118 2 1 181 0 3 442 1 0 239 3 0 6 1 4 198 1 3 425 chain 280322 chr5 180915260 + 71146942 71150001 L1PA2 6032 + 2972 6030 14623 77 1 0 2981 chain 33885 chr5 180915260 + 71150001 71150431 THE1C-int 1605 - 1176 1605 77800 407 11 10 12 chain 29250 chr5 180915260 + 71192259 71192639 MLT2A1 477 + 0 387 87791 140 1 2 16 11 16 21 4 5 187 chain 461457 chr5 180915260 + 71192703 71198309 HERVL-int 5654 + 0 5654 8351 98 0 1 75 0 2 207 0 6 116 1 2 28 2 1 88 0 2 242 1 6 244 0 1 350 0 1 56 3 0 29 2 6 59 0 5 70 0 1 29 7 8 966 9 8 578 5 4 618 0 16 21 0 2 285 0 1 335 0 2 37 8 10 816 1 2 220 chain 13475 chr5 180915260 + 71198309 71198472 MLT2A1 477 + 0 164 146439 140 0 1 23 chain 4264 chr5 180915260 + 71198472 71198522 MLT2A1 477 + 427 477 203706 50 chain 13845 chr5 180915260 + 71223518 71223695 MER41B 635 + 0 184 145084 73 0 6 48 1 2 55 chain 206122 chr5 180915260 + 71246051 71248512 L1PA7 6471 - 5 2472 18782 8 11 0 54 2 0 8 0 2 16 0 1 449 1 5 151 3 2 1376 4 17 378 chain 20450 chr5 180915260 + 71253554 71253821 L1PA5 6144 + 5889 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1 0 13 0 21 122 1 0 18 1 0 35 0 3 25 1 0 219 1 0 9 chain 22309 chr5 180915260 + 71594328 71594565 AluYb9 318 + 77 314 118881 237 chain 3024 chr5 180915260 + 71629448 71629498 L1MA8 2339 + 2124 2175 224488 31 6 7 13 chain 27253 chr5 180915260 + 71631016 71631301 AluYb8 318 + 22 307 95427 285 chain 83335 chr5 180915260 + 71640456 71641536 MER11B 1079 - 5 1079 42188 15 5 6 171 0 1 110 8 2 174 37 35 301 10 7 22 0 5 83 6 4 138 chain 38156 chr5 180915260 + 71700639 71701223 LTR12F 595 + 0 595 71901 104 5 0 25 25 0 16 30 70 308 15 16 56 chain 4194 chr5 180915260 + 71712562 71712610 MIR 256 - 96 144 204627 48 chain 28025 chr5 180915260 + 71780030 71780322 AluYa5 310 + 1 293 92913 292 chain 33470 chr5 180915260 + 71832176 71832622 MLT2A1 477 + 0 475 78458 88 0 3 80 3 0 31 0 1 182 4 0 15 8 40 35 chain 41518 chr5 180915260 + 71840048 71840535 L1PA5 6144 - 5 484 67259 418 8 0 61 chain 3525 chr5 180915260 + 71863814 71863908 LTR33A 529 + 83 184 214973 24 43 50 27 chain 46199 chr5 180915260 + 71868897 71869459 MLT2A2 560 + 0 560 61848 183 1 0 113 1 0 264 chain 548010 chr5 180915260 + 71873144 71879283 L1PA4 6152 + 0 6152 1706 355 0 1 214 0 4 163 1 0 499 0 1 544 1 0 23 1 8 323 10 9 2339 0 2 1523 0 1 143 chain 37917 chr5 180915260 + 71894444 71894937 LTR2B 499 - 0 499 72256 55 1 0 76 0 9 197 4 5 142 3 0 15 chain 25110 chr5 180915260 + 71901195 71901494 AluSp 311 + 5 304 104228 299 chain 28052 chr5 180915260 + 71916558 71916852 AluYa8 305 - 2 296 92820 294 chain 24923 chr5 180915260 + 71922414 71922771 L1PA13 3608 + 3142 3487 105204 18 1 0 113 2 0 62 1 0 56 13 10 42 2 0 5 2 0 20 2 1 18 chain 3011 chr5 180915260 + 71931477 71931512 MIRc 230 + 45 80 224788 35 chain 31380 chr5 180915260 + 71931626 71931974 L1PA4 6152 + 4843 5191 81851 348 chain 83493 chr5 180915260 + 71931974 71932919 L1PA4 6152 + 5198 6143 42120 945 chain 21047 chr5 180915260 + 71934564 71934860 MER1B 344 - 0 295 123744 62 10 16 182 13 6 29 chain 9733 chr5 180915260 + 71940081 71940185 L1PA5 6144 - 4 108 161922 104 chain 21083 chr5 180915260 + 71946018 71946277 L1PA8A 6298 - 8 266 123615 104 1 0 154 chain 24725 chr5 180915260 + 71964852 71965111 AluYb8 318 + 52 311 106295 259 chain 13655 chr5 180915260 + 71965303 71965469 L1P3 4156 + 0 166 145756 166 chain 163749 chr5 180915260 + 71970145 71972260 L1PA8 5853 - 0 2117 22841 93 1 0 19 2 1 29 49 51 50 2 0 46 1 0 385 3 0 7 0 3 154 8 10 246 4 5 145 0 1 108 6 7 94 0 1 182 2 1 479 chain 183493 chr5 180915260 + 71996219 71998286 L1PA5 6144 - 3 2082 20629 43 0 4 63 1 0 14 0 1 560 0 1 264 0 7 1122 chain 15558 chr5 180915260 + 72000625 72000846 MER30 238 + 0 237 139706 67 6 7 30 5 20 113 chain 523977 chr5 180915260 + 72023465 72029561 L1PA5 6144 + 0 6128 4768 124 0 14 12 16 28 963 8 11 17 9 0 540 1 0 313 0 1 291 0 1 16 0 1 47 0 4 9 0 1 1288 0 3 796 0 3 145 2 0 155 0 2 228 0 1 4 1 0 276 1 0 834 chain 5261 chr5 180915260 + 72037322 72037388 L1MB3 1562 - 954 1020 192396 66 chain 3426 chr5 180915260 + 72083903 72083955 Tigger5 388 - 1 51 216654 11 3 1 38 chain 34571 chr5 180915260 + 72087779 72088232 MER4A1 472 - 0 472 76791 197 8 7 22 8 29 111 1 0 12 2 1 76 0 1 16 chain 6562 chr5 180915260 + 72089522 72089600 MER1B 344 + 183 261 180766 78 chain 507033 chr5 180915260 + 72099026 72105316 L1PA7 6471 - 7 6471 6392 488 0 1 354 2 0 48 0 1 17 0 4 713 13 20 13 9 8 415 7 20 1119 0 4 509 4 145 624 12 5 491 1 0 104 0 1 129 0 13 501 40 39 117 4 5 152 0 1 335 4 3 65 chain 4600 chr5 180915260 + 72139475 72139531 MER20B 722 + 307 363 199635 56 chain 5438 chr5 180915260 + 72162054 72162133 L1PA16 3655 - 86 164 190631 63 2 1 14 chain 4441 chr5 180915260 + 72221903 72222010 LTR12C 1709 + 652 837 201443 33 39 117 35 chain 474717 chr5 180915260 + 72222642 72228384 HERV9-int 5642 + 0 5642 7889 162 0 4 589 1 0 31 6 5 97 1 0 38 5 5 97 80 0 79 4 0 48 0 4 527 6 7 399 0 3 1597 0 10 359 0 1 1169 1 0 226 5 3 37 3 1 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 3862 chr5 180915260 + 72231605 72231647 LTR12C 1709 + 795 837 209430 42 chain 24637 chr5 180915260 + 72257426 72257716 AluSp 311 - 17 310 106798 200 0 3 90 chain 6649 chr5 180915260 + 72261085 72261230 Tigger1a_Art 216 - 66 205 180105 12 6 9 39 20 8 21 6 9 41 chain 364705 chr5 180915260 + 72266851 72270855 L1PA3long 6157 - 322 4327 11238 685 0 1 3319 chain 5205 chr5 180915260 + 72272337 72272403 L1MC1 2226 - 744 810 192976 66 chain 447679 chr5 180915260 + 72272456 72278196 L1PA7 6471 - 5 6471 8825 37 0 1 120 9 1 104 0 4 80 0 1 501 0 3 8 0 4 304 1 0 90 0 1 157 1 11 179 0 1 854 7 5 262 6 0 14 327 0 227 9 8 781 0 3 72 0 1 886 1 0 343 0 1042 160 0 1 200 chain 11190 chr5 180915260 + 72279048 72279193 L1PA7 6471 - 15 151 155460 4 1 0 92 8 0 40 chain 3544 chr5 180915260 + 72291047 72291086 MSTC 436 - 12 51 214639 39 chain 9768 chr5 180915260 + 72300586 72300753 MER44A 345 + 78 264 161753 11 0 5 6 0 6 26 5 4 12 9 0 11 0 19 5 1 0 81 chain 14546 chr5 180915260 + 72339749 72340063 MSTA 426 + 26 389 142734 8 0 3 5 3 0 41 40 65 20 0 6 32 4 0 6 2 0 5 1 7 12 18 16 41 4 24 72 chain 10012 chr5 180915260 + 72361764 72361884 L1PB4 2604 - 52 172 160527 120 chain 29380 chr5 180915260 + 72365047 72365478 MER1A 529 - 1 427 87168 14 0 2 51 6 7 209 4 5 97 37 28 13 chain 2160 chr5 180915260 + 72396968 72397326 Charlie2b 853 - 257 600 237075 15 8 7 19 294 280 22 chain 37134 chr5 180915260 + 72424868 72425400 MER51A 677 - 0 673 73333 64 1 0 127 1 0 4 0 1 117 12 165 23 18 1 21 1 7 143 chain 14965 chr5 180915260 + 72473935 72474110 Tigger1 2417 - 1436 1611 141433 175 chain 21427 chr5 180915260 + 72480738 72480974 AluYa5 310 - 0 236 122416 236 chain 14894 chr5 180915260 + 72483863 72484106 MER30 238 - 0 238 141646 39 3 0 44 1 2 16 37 34 103 chain 6363 chr5 180915260 + 72495446 72495571 LTR47B 464 - 7 193 182295 72 14 77 15 10 8 14 chain 538400 chr5 180915260 + 72502593 72509026 L1PA7 6471 + 0 6454 3088 129 17 13 316 0 1 26 2 1 221 8 10 140 1 0 495 5 4 199 0 1 478 0 7 96 1 0 294 1 2 206 0 2 60 2 1 25 1 2 347 6 12 136 1 2 1442 0 4 311 0 2 636 1 0 50 0 5 27 5 0 613 1 2 111 7 9 16 chain 2835 chr5 180915260 + 72521256 72521288 L1MC 810 - 494 526 228145 32 chain 22924 chr5 180915260 + 72583213 72583552 THE1C 375 + 0 336 115992 69 10 11 105 33 29 122 chain 35705 chr5 180915260 + 72619477 72620094 L1MA3 4352 + 3761 4352 75265 8 0 1 20 0 10 37 0 1 12 0 1 28 0 10 15 0 1 25 7 10 16 5 1 136 62 26 117 4 0 22 2 0 24 1 0 6 1 0 29 1 0 11 6 2 22 chain 10464 chr5 180915260 + 72644737 72644987 Ricksha_c 1012 - 710 924 158419 30 4 0 5 9 0 20 14 7 14 2 0 5 1 0 14 5 0 22 0 2 6 34 25 4 1 0 60 chain 48739 chr5 180915260 + 72664122 72665065 L1PA8A 6298 - 8 656 59921 14 0 9 75 8 16 160 6 7 297 313 0 70 chain 15564 chr5 180915260 + 72686383 72686562 L1PA5 6144 + 5962 6144 139689 166 2 5 11 chain 4160 chr5 180915260 + 72693711 72693829 MLT2F 649 + 524 643 205097 42 53 54 23 chain 38357 chr5 180915260 + 72698573 72698994 L1PA3long 6157 - 0 425 71637 287 0 3 43 0 1 91 chain 20810 chr5 180915260 + 72698994 72699222 L1PA3long 6157 + 5553 5781 124570 228 chain 24879 chr5 180915260 + 72700759 72701062 AluY 311 + 0 310 105462 8 0 6 118 0 1 20 1 2 17 2 1 137 chain 4037 chr5 180915260 + 72729057 72729270 L1MD2 1676 - 460 674 206817 34 139 134 24 0 7 10 1 0 5 chain 28945 chr5 180915260 + 72735768 72736074 AluYg6 310 + 0 306 89246 306 chain 34781 chr5 180915260 + 72757439 72757970 LTR9 672 + 0 659 76504 120 0 14 60 1 0 6 0 1 59 1 0 55 44 87 70 5 76 74 12 13 24 chain 129689 chr5 180915260 + 72764313 72765746 L1PA3long 6157 - 11 1464 28158 493 0 18 334 0 1 320 0 1 286 chain 4649 chr5 180915260 + 72784619 72784820 MLT1A 405 - 170 394 199068 17 130 153 54 chain 9995 chr5 180915260 + 72815001 72815149 MSTD 398 - 0 147 160603 55 10 8 10 1 2 72 chain 4801 chr5 180915260 + 72827650 72827706 MER41G 495 + 430 486 197354 56 chain 14905 chr5 180915260 + 72827978 72828275 MER1B 344 - 5 298 141617 58 42 18 60 51 71 86 chain 3848 chr5 180915260 + 72883215 72883259 MER3 215 + 171 215 209660 44 chain 24454 chr5 180915260 + 72904150 72904450 AluSp 311 - 14 311 107781 165 2 0 104 1 0 28 chain 5501 chr5 180915260 + 72914591 72914660 L1PA6 6164 - 4 70 190029 6 3 0 60 chain 26842 chr5 180915260 + 73005277 73005650 LTR3B 427 - 4 427 96835 46 18 63 9 0 3 124 7 0 100 0 9 69 chain 9257 chr5 180915260 + 73028836 73029021 L1PB1 5432 - 9 175 164280 19 1 0 12 1 0 22 1 0 24 2 0 13 10 7 14 20 10 22 1 0 23 chain 29272 chr5 180915260 + 73038367 73038676 AluYb8 318 + 0 309 87685 309 chain 26621 chr5 180915260 + 73061695 73062004 AluYk11 308 + 0 307 97591 234 3 1 72 chain 120020 chr5 180915260 + 73063065 73064612 THE1B-int 1605 + 0 1600 31052 264 0 9 153 0 25 228 0 3 29 4 6 175 0 6 37 1 0 350 1 0 274 12 22 19 chain 23754 chr5 180915260 + 73083227 73083556 L1PA7 6471 - 10 350 111750 6 0 4 134 18 19 29 5 13 117 3 1 17 chain 559935 chr5 180915260 + 73170238 73176394 L1PA3long 6157 - 0 6148 361 140 7 0 3317 2 0 2109 0 1 581 chain 11578 chr5 180915260 + 73216374 73216495 AluYk12 309 - 10 131 153992 121 chain 28390 chr5 180915260 + 73228621 73228934 AluYg6 310 - 0 310 91620 184 3 0 126 chain 12265 chr5 180915260 + 73249496 73249869 MLT1A 405 + 1 391 151133 27 8 6 25 7 1 40 20 21 35 131 158 23 1 0 17 2 0 37 chain 2856 chr5 180915260 + 73268576 73268606 MER5A 189 - 23 53 227736 30 chain 39074 chr5 180915260 + 73285285 73285818 MER41A 554 - 0 553 70639 37 1 3 68 0 1 4 1 0 10 1 0 196 5 23 119 18 19 73 chain 76365 chr5 180915260 + 73289613 73290661 MER11C 1089 - 30 1089 45282 143 1 0 52 0 1 88 14 6 31 0 1 38 1 0 4 1 5 113 46 44 147 1 0 65 0 4 57 4 13 17 0 5 225 chain 195460 chr5 180915260 + 73317650 73320025 L1PA7 6471 - 3 2395 19543 160 1 0 175 1 2 138 0 3 279 2 1 60 11 9 17 0 3 311 0 5 225 2 1 362 0 3 36 0 4 246 0 1 143 0 3 108 1 0 97 chain 4749 chr5 180915260 + 73387688 73387879 L1MA6 2487 - 223 398 197923 32 114 96 20 0 2 25 chain 321009 chr5 180915260 + 73512604 73516421 L1PA6 6164 + 2357 6160 12556 828 1 0 36 25 3 40 0 4 272 1 0 96 0 1 317 0 1 415 0 5 78 2 0 190 1 0 475 0 1 199 3 1 79 1 0 249 0 1 322 4 6 165 0 1 18 chain 21171 chr5 180915260 + 73517524 73517783 L1PA5 6144 - 0 258 123304 11 3 1 135 0 1 110 chain 65010 chr5 180915260 + 73517783 73518555 L1P1 4361 - 3368 4357 50571 650 0 2 5 2 0 27 0 217 88 chain 5266 chr5 180915260 + 73567517 73567588 MADE1 96 + 6 96 192355 21 0 18 13 0 1 37 chain 3099 chr5 180915260 + 73575689 73575731 MER53 195 - 38 79 222925 32 1 0 9 chain 18825 chr5 180915260 + 73596856 73597203 THE1D 372 - 0 372 130593 32 1 0 87 42 43 14 38 62 51 5 6 77 chain 18903 chr5 180915260 + 73609103 73609385 MER4D1 891 + 634 883 130359 26 29 0 4 1 0 60 1 0 54 1 0 43 1 0 62 chain 9467 chr5 180915260 + 73621413 73621596 MLT1B 390 - 211 390 163240 72 19 20 10 11 13 36 8 0 9 0 1 18 chain 16430 chr5 180915260 + 73625839 73626053 MER30 238 + 0 238 137117 64 0 11 25 0 13 125 chain 33049 chr5 180915260 + 73626471 73626895 MLT2A1 477 - 0 477 79143 50 0 46 176 0 1 22 0 1 11 4 1 18 1 9 142 chain 33524 chr5 180915260 + 73640558 73640941 L1PA5 6144 - 0 383 78358 383 chain 514701 chr5 180915260 + 73640952 73647050 L1PA3long 6157 - 0 6149 5702 573 0 1 272 3 1 76 0 1 4 1 0 69 0 5 184 0 2 831 0 23 932 1 0 858 1 2 242 0 1 830 20 20 245 0 16 255 0 7 132 0 1 137 4 1 428 chain 28849 chr5 180915260 + 73648993 73649303 AluYa5 310 - 0 310 89673 310 chain 5272 chr5 180915260 + 73691467 73691530 MER5A 189 + 51 114 192300 63 chain 37042 chr5 180915260 + 73731463 73731919 L1PA7 6471 - 2282 2737 73346 61 0 1 236 1 0 62 1 0 95 chain 190162 chr5 180915260 + 73731919 73734198 L1PA7 6471 + 4185 6469 20031 537 0 2 35 1 0 4 0 1 70 0 1 80 1 0 116 0 1 423 0 1 158 0 3 83 1 4 262 1 3 490 7 0 10 chain 23978 chr5 180915260 + 73739823 73740107 AluSx4 309 + 1 285 110459 284 chain 10034 chr5 180915260 + 73752572 73752742 MSTA 426 - 232 426 160407 46 17 40 37 1 0 4 9 11 56 chain 19896 chr5 180915260 + 73785205 73785545 Tigger3a 397 + 0 395 127500 33 62 106 194 10 21 41 chain 24811 chr5 180915260 + 73818688 73819041 THE1B 368 + 0 368 105833 44 6 21 44 14 15 48 2 1 195 chain 124579 chr5 180915260 + 73819041 73820624 THE1B-int 1605 + 0 1605 29513 288 10 8 134 0 25 307 7 8 377 7 2 49 1 2 132 0 1 4 0 1 267 chain 4175 chr5 180915260 + 73820624 73820668 THE1B 368 + 0 44 204916 44 chain 14377 chr5 180915260 + 73820774 73820966 THE1B 368 + 172 367 143276 16 4 6 153 0 1 19 chain 41114 chr5 180915260 + 73857664 73858422 L1PB1 5432 + 4659 5408 67755 24 1 3 35 0 3 99 16 15 25 0 1 72 0 18 128 0 3 7 36 34 8 1 0 10 1 0 14 4 0 10 2 0 52 18 16 10 2 0 35 36 23 19 12 9 13 2 0 25 1 0 21 1 0 13 1 0 4 chain 40607 chr5 180915260 + 73881238 73881764 MER41A 554 - 0 523 68428 120 0 1 166 12 8 59 3 0 5 8 11 153 chain 36785 chr5 180915260 + 73887354 73887791 MER41A 554 - 109 554 73820 144 0 1 255 0 7 38 chain 24141 chr5 180915260 + 73891928 73892240 AluY 311 + 0 311 109512 29 4 0 103 11 12 132 0 2 33 chain 2891 chr5 180915260 + 73941204 73941266 L1MC 810 - 557 618 227187 27 18 17 17 chain 13137 chr5 180915260 + 73972024 73972696 LTR23 429 - 31 234 147694 15 1 0 93 484 15 18 0 1 61 chain 4124 chr5 180915260 + 73976449 73976497 MLT1F1 559 + 39 87 205607 48 chain 29663 chr5 180915260 + 73997892 73998202 AluYa5 310 - 0 310 85999 310 chain 553428 chr5 180915260 + 74002132 74008265 L1PA3long 6157 + 0 6157 1012 708 0 7 474 0 3 338 6 0 24 3 8 804 1 0 893 0 4 252 0 2 845 0 4 891 1 3 286 0 3 458 0 1 149 chain 4568 chr5 180915260 + 74008455 74008517 L1MC5 759 - 64 128 200017 28 0 2 34 chain 4304 chr5 180915260 + 74027247 74027305 MER77 626 + 315 372 203164 23 1 0 34 chain 12766 chr5 180915260 + 74041259 74041422 MER2 342 + 157 320 149187 163 chain 179536 chr5 180915260 + 74049436 74052081 L1PBa 3878 + 918 3573 21026 66 4 3 254 1 3 18 0 1 101 0 1 249 9 0 24 11 19 97 0 4 65 0 1 234 0 4 88 281 0 315 1 262 74 0 5 184 0 2 18 8 12 33 0 2 50 0 3 27 7 14 68 5 1 353 chain 5364 chr5 180915260 + 74052135 74052213 L1PB1 5432 + 4739 4825 191377 54 1 9 23 chain 24701 chr5 180915260 + 74067391 74067707 AluY 311 + 1 311 106428 117 7 0 10 1 2 181 chain 7991 chr5 180915260 + 74075133 74075237 U6 107 + 0 105 171112 79 0 2 16 1 0 8 chain 7887 chr5 180915260 + 74081615 74081712 L1PB1 5432 + 4632 4731 171752 73 0 2 24 chain 429309 chr5 180915260 + 74082140 74088024 HERVL-int 5654 + 3 5654 9327 167 0 2 97 0 2 114 16 28 233 3 4 52 13 138 42 3 4 4 1 0 310 0 1 247 4 8 68 1 2 15 3 0 179 5 1 9 7 11 51 0 12 237 1 0 90 1 0 125 316 0 65 0 6 65 0 4 566 9 10 215 116 0 373 1 0 154 0 10 100 5 7 33 5 6 41 0 4 48 1 3 30 1 0 1229 14 13 241 0 1 4 1 9 26 8 16 119 chain 15079 chr5 180915260 + 74089171 74089503 L1PB1 5432 + 5107 5404 141089 7 5 0 24 2 1 7 1 0 12 17 11 51 2 1 15 1 0 37 7 6 17 24 12 18 3 1 5 1 0 16 2 0 22 1 0 22 1 0 12 chain 42986 chr5 180915260 + 74111391 74111923 MER41A 554 + 0 554 65430 410 0 4 54 0 5 51 0 13 17 chain 24214 chr5 180915260 + 74137975 74138274 AluSg4 309 + 11 309 109126 37 6 5 256 chain 42625 chr5 180915260 + 74165244 74165753 MER9a3 513 + 0 513 65869 19 1 0 204 0 3 32 1 0 28 0 1 158 0 2 66 chain 26706 chr5 180915260 + 74169391 74169768 THE1B 368 - 0 368 97303 104 1 0 93 1 0 63 39 32 76 chain 16638 chr5 180915260 + 74172727 74172916 L1PA5 6144 - 1 190 136560 189 chain 26595 chr5 180915260 + 74178608 74178986 LTR7 482 - 7 482 97679 165 0 3 15 8 38 26 6 7 10 1 11 49 0 50 32 0 1 9 1 3 56 chain 523143 chr5 180915260 + 74200111 74207996 L1PA7 6471 - 1 6413 4854 104 307 4 30 0 15 8 18 3 19 4 5 5 0 1 73 0 2 585 1 0 140 1 6 106 323 0 286 315 0 322 21 0 253 0 1 639 4 3 301 523 7 200 0 1 49 27 4 50 0 1 613 0 2 48 0 1 418 0 1 42 2 1 248 0 12 619 0 5 334 14 14 368 1 0 5 16 17 96 1 0 199 8 7 139 chain 25631 chr5 180915260 + 74201522 74201833 AluSp 311 - 10 311 101574 127 7 0 42 3 0 132 chain 44183 chr5 180915260 + 74203976 74204485 MER9a2 513 - 0 512 63965 129 0 3 380 chain 22867 chr5 180915260 + 74218257 74218512 AluY 311 + 39 295 116245 93 0 1 162 chain 36167 chr5 180915260 + 74266793 74267255 LTR2 463 + 0 463 74681 360 31 32 71 chain 3442 chr5 180915260 + 74308601 74308694 MLT1C 463 + 266 386 216332 33 40 67 20 chain 144744 chr5 180915260 + 74309322 74311535 L1PA11 4918 + 2675 4567 25363 45 0 3 39 0 1 194 0 1 35 312 7 182 2 1 1142 1 0 62 8 7 13 2 0 68 2 0 12 2 1 20 43 31 15 1 0 13 chain 13659 chr5 180915260 + 74315893 74316086 LTR18B 584 + 2 195 145746 74 16 17 95 1 0 7 chain 27154 chr5 180915260 + 74329507 74329857 L1PA8 5853 - 0 343 95742 93 1 0 19 3 2 51 1 0 9 2 1 70 2 0 44 1 0 54 chain 9300 chr5 180915260 + 74354594 74354707 MSTD 398 - 283 396 164059 113 chain 25690 chr5 180915260 + 74357931 74358304 MSTA 426 + 0 387 101328 103 5 10 40 0 6 48 29 33 70 1 0 77 chain 26788 chr5 180915260 + 74373468 74373781 AluYk4 311 + 0 306 97018 211 7 0 95 chain 19909 chr5 180915260 + 74381201 74381517 AluSz6 309 - 15 300 127449 16 0 2 28 14 11 47 16 1 14 16 1 165 chain 516080 chr5 180915260 + 74392491 74398884 L1PA5 6144 - 1 6144 5566 141 8 9 27 0 2 152 0 1 441 4 3 69 1 5 504 273 0 555 0 1 972 0 9 1229 1 0 500 3 0 74 0 1 75 1 2 199 15 6 14 0 3 255 1 0 154 16 17 523 51 65 135 chain 8306 chr5 180915260 + 74410308 74410396 L1PA3long 6157 - 1840 1928 166780 88 chain 168750 chr5 180915260 + 74410396 74412244 L1PA3long 6157 + 4309 6157 22194 1848 chain 20718 chr5 180915260 + 74423995 74424237 L1PA7 6471 + 6222 6470 124896 221 0 6 21 chain 518736 chr5 180915260 + 74425490 74432997 L1PA5 6144 + 0 6143 5301 135 10 24 145 1379 0 865 9 0 197 0 1 158 0 1 311 0 1 6 0 3 347 0 2 117 10 8 117 2 0 598 0 1 242 0 1 382 10 6 52 0 1 210 0 1 298 0 1 776 0 1 21 0 3 945 0 1 165 chain 92317 chr5 180915260 + 74425792 74427159 LTR12D 1347 - 8 1347 38876 222 0 97 314 14 7 132 0 31 54 78 0 149 97 26 307 chain 5426 chr5 180915260 + 74426528 74426592 LTR12D 1347 - 715 779 157836 64 chain 104231 chr5 180915260 + 74440304 74441573 L1PA7 6471 + 5196 6469 35684 93 9 7 298 0 6 21 1 0 77 0 2 394 0 1 177 1 7 42 9 8 132 7 0 8 chain 125911 chr5 180915260 + 74456861 74458447 THE1B-int 1605 + 0 1605 29127 432 2 27 229 30 24 893 chain 250842 chr5 180915260 + 74468230 74471212 L1PA6 6164 + 3168 6161 16190 17 5 6 307 0 1 510 1 4 101 0 2 105 0 1 277 0 2 126 0 2 468 1 2 54 0 1 51 7 0 109 0 5 159 0 1 527 12 10 145 chain 545900 chr5 180915260 + 74471573 74477724 L1PA4 6152 + 1 6152 1958 3183 0 1 705 0 2 169 1 0 4 0 1 907 0 1 125 0 1 201 2 0 516 0 1 316 1 0 13 3 0 5 chain 61319 chr5 180915260 + 74518329 74519048 L1PA8A 6298 - 9 736 52193 336 0 8 383 chain 6339 chr5 180915260 + 74542570 74542698 MLT1C 463 - 200 335 182468 49 42 49 37 chain 85956 chr5 180915260 + 74543672 74545791 L1PA7 6471 + 0 2148 5963 306 0 1 97 1 2 109 0 1 124 9 10 18 0 16 15 17 18 24 0 1 39 2 1 204 1 0 4 0 1 247 0 4 136 1 2 312 0 1 59 0 1 260 0 1 12 1 0 8 6 7 107 chain 542904 chr5 180915260 + 74545814 74551958 L1PA4 6152 - 1 6145 2356 354 0 1 494 0 3 1360 0 1 735 1 0 1959 0 1 406 0 1 256 1 0 118 12 6 146 0 1 302 chain 175886 chr5 180915260 + 74551961 74556297 L1PA7 6471 + 2148 6469 5963 103 0 1 15 7 4 224 0 2 65 4 5 64 2 1 35 5 1 293 0 1 390 1 2 5 1 0 185 15 0 691 0 1 21 1 2 244 0 3 5 11 8 119 1 0 707 1 0 11 0 2 139 0 1 123 1 0 432 0 1 83 4 3 189 2 1 126 0 2 11 chain 176856 chr5 180915260 + 74565332 74567990 SVA_D 2077 + 7 2070 21266 12 5 6 22 6 0 715 40 0 158 1 38 78 0 2 54 0 1 37 549 8 48 48 0 196 0 8 11 8 0 365 1 0 304 chain 36646 chr5 180915260 + 74566490 74566952 SVA_F 1814 + 620 1291 74032 12 0 40 61 0 169 46 0 15 268 15 1 42 1 0 17 chain 2398 chr5 180915260 + 74567057 74567084 SVA_D 2077 + 1313 1390 124665 26 0 50 1 chain 30610 chr5 180915260 + 74581017 74581733 MER4A1 472 + 0 453 83190 15 0 2 5 1 2 7 1 0 98 288 0 93 10 31 147 1 3 50 chain 325137 chr5 180915260 + 74584796 74589533 L1P3 4156 - 17 4156 12385 24 11 8 165 1 2 107 0 1 306 0 1 248 6 7 36 0 1 525 0 3 67 12 0 215 0 3 350 2 1 158 1 27 79 1 0 48 0 1 176 638 9 19 0 1 250 9 26 8 1 0 812 0 1 53 12 6 71 8 7 66 1 0 251 chain 41035 chr5 180915260 + 74587342 74587924 LTR14B 630 - 0 578 67850 194 8 0 11 42 12 13 0 9 74 4 29 236 chain 180577 chr5 180915260 + 74592545 74595007 MER4-int 2692 + 112 2692 20936 6 0 2 14 1 12 106 0 3 163 0 4 130 19 36 136 10 2 6 0 5 69 1 2 83 6 0 28 0 1 143 8 10 100 0 1 84 5 7 87 2 1 159 6 1 192 0 5 70 1 0 47 0 1 62 0 2 47 7 8 16 0 77 230 2 0 5 0 1 4 0 3 173 15 16 6 0 1 197 1 2 8 1 0 6 chain 32816 chr5 180915260 + 74595016 74595461 MER4A1 472 + 0 472 79506 15 4 7 203 1 23 135 19 21 68 chain 38344 chr5 180915260 + 74600279 74600769 LTR17 781 + 255 773 71659 72 1 0 81 0 5 282 19 43 35 chain 48776 chr5 180915260 + 74614229 74614806 LTR66 600 + 0 600 59892 252 0 1 150 0 6 51 0 16 124 chain 127751 chr5 180915260 + 74629325 74630835 LTR12C 1709 + 2 1709 28633 102 9 4 702 0 200 101 1 0 113 0 4 408 1 0 73 chain 31313 chr5 180915260 + 74653394 74653823 L1PA8 5853 + 5422 5847 81969 100 1 0 88 14 12 58 1 0 13 2 0 6 0 1 8 0 3 32 1 0 17 2 1 86 chain 45508 chr5 180915260 + 74703515 74704334 PABL_A 660 + 5 653 62490 18 7 21 40 0 9 85 221 0 159 8 32 204 0 3 77 chain 18359 chr5 180915260 + 74727542 74727876 L1PA15 4387 - 31 347 131910 27 8 3 10 2 0 46 6 3 42 10 9 8 4 0 9 1 0 9 6 5 44 0 1 10 1 0 26 1 0 64 chain 6694 chr5 180915260 + 74740228 74740361 L1M4c 1769 - 46 182 179730 47 0 4 11 19 21 31 10 7 15 chain 92276 chr5 180915260 + 74750115 74751358 HSMAR1 1287 + 25 1279 38884 91 7 10 33 0 5 37 9 0 130 0 1 187 7 6 42 4 3 281 0 12 49 23 25 310 6 5 27 chain 31371 chr5 180915260 + 74759458 74759953 LOR1a 498 - 0 498 81872 98 0 1 9 68 71 25 0 2 5 6 4 116 1 0 167 chain 35080 chr5 180915260 + 74769765 74770232 LTR2B 499 + 5 499 76077 7 0 1 16 1 11 34 3 0 37 0 7 7 6 18 165 0 1 8 1 0 182 chain 14382 chr5 180915260 + 74784756 74784915 L1PA7 6471 + 4992 5154 143262 129 0 3 30 chain 72259 chr5 180915260 + 74784916 74785773 L1PA7 6471 + 5154 6043 47351 468 0 10 66 0 2 222 0 20 101 chain 33405 chr5 180915260 + 74785774 74786176 L1PA7 6471 + 6063 6465 78555 402 chain 10027 chr5 180915260 + 74791636 74791752 L1PA2 6032 + 5910 6026 160439 116 chain 110222 chr5 180915260 + 74793622 74795143 THE1C-int 1605 + 0 1605 34151 13 3 2 88 1 2 5 0 54 241 17 12 28 5 12 126 0 1 96 1 0 72 6 0 28 11 1 236 28 25 135 1 0 120 8 56 252 chain 16947 chr5 180915260 + 74795150 74795429 THE1C 375 + 7 347 135737 101 0 50 14 9 10 10 40 50 105 chain 494297 chr5 180915260 + 74856345 74862619 L1PA7 6471 - 1 6437 7152 330 0 3 94 0 2 336 0 6 30 0 2 46 2 1 635 1 0 258 4 0 64 0 3 650 7 6 145 138 0 23 1 0 16 0 255 42 1 0 264 2 0 39 1 2 118 0 4 463 41 9 145 1 38 62 0 1 213 0 5 87 0 4 108 6 7 190 0 1 545 20 24 125 2 3 48 2 17 569 0 1 27 0 1 136 28 24 209 chain 65971 chr5 180915260 + 74868605 74869338 L1PA4 6152 + 5408 6141 50117 733 chain 74296 chr5 180915260 + 74901657 74902617 LTR5_Hs 974 - 0 974 46361 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 45797 chr5 180915260 + 74906660 74907169 SVA_A 1864 - 0 511 62237 202 0 2 307 chain 11586 chr5 180915260 + 74911536 74911709 MLT1B 390 - 219 390 153947 25 6 0 6 10 15 55 1 0 70 chain 559164 chr5 180915260 + 74938060 74944090 L1PA2 6032 + 2 6032 410 6030 chain 9209 chr5 180915260 + 74948632 74948813 Tigger3a 397 - 61 343 164513 15 2 1 45 0 6 12 1 2 33 33 128 40 chain 541710 chr5 180915260 + 74991525 74997555 L1PA3long 6157 + 0 6157 2558 153 1 2 527 0 3 96 0 128 251 0 5 413 1 0 360 0 1 178 13 1 687 0 1 1047 0 1 2303 chain 15158 chr5 180915260 + 74997934 74998153 L1PA8 5853 + 5638 5853 140884 44 1 0 11 9 8 39 2 1 19 2 1 92 chain 35068 chr5 180915260 + 75021260 75021730 LTR26B 539 - 34 537 76091 102 0 1 129 0 5 15 12 26 117 0 7 44 0 8 39 2 0 10 chain 13806 chr5 180915260 + 75022722 75022930 L1MA1 4479 - 289 484 145243 18 6 0 16 3 0 5 1 0 9 1 0 37 2 0 27 1 0 68 0 1 14 chain 22123 chr5 180915260 + 75026953 75027186 AluYa5 310 + 70 303 119686 233 chain 83785 chr5 180915260 + 75055897 75056863 L1PA6 6164 - 8 976 41994 87 0 1 745 1 2 133 chain 95542 chr5 180915260 + 75060231 75061821 L1PB1 5432 - 10 1506 37946 18 1 0 14 1 0 20 1 0 24 2 0 8 13 12 18 17 6 6 2 0 16 1 0 44 1 0 17 1 0 49 4 2 9 2 0 3 2 0 7 7 11 24 3 0 5 5 6 301 15 24 72 0 2 70 4 0 5 1 0 25 130 53 281 7 8 191 1 0 49 0 1 34 0 1 23 0 1 36 chain 514542 chr5 180915260 + 75065378 75071158 L1PA3long 6157 - 1 5851 5721 561 1 2 279 0 4 2620 1 0 522 3 4 1327 4 69 462 chain 8628 chr5 180915260 + 75076752 75076983 L1M1 2793 - 488 729 167592 17 69 87 69 7 1 19 13 8 10 0 3 27 chain 223817 chr5 180915260 + 75077039 75079804 L1PA7 6471 + 3686 6461 17663 214 3 2 106 0 1 659 0 12 36 0 2 95 0 4 532 16 0 264 1 8 77 0 2 608 7 6 147 chain 11595 chr5 180915260 + 75085439 75085627 L1MA3 4352 + 4119 4301 153910 84 0 2 31 5 1 22 2 0 19 12 10 13 chain 57057 chr5 180915260 + 75086944 75087772 L1PA13 3608 - 131 949 54495 9 1 0 20 9 5 43 6 4 4 1 0 55 2 1 63 2 0 79 0 1 33 1 0 32 2 1 60 29 31 135 3 4 172 1 0 66 chain 16203 chr5 180915260 + 75087939 75088163 MLT2A1 477 - 94 322 137744 54 6 5 117 0 1 33 3 7 11 chain 533295 chr5 180915260 + 75088454 75094595 L1PA4 6152 - 7 6146 3806 106 0 1 214 0 3 195 0 1 1937 4 1 6 0 1 169 2 0 5 3 7 296 1 0 26 1 0 6 1 0 64 4 0 3101 chain 124806 chr5 180915260 + 75094595 75096147 L1P1 4361 - 2802 4357 29428 15 0 1 109 2 0 392 0 1 94 13 14 281 4 6 642 chain 31603 chr5 180915260 + 75098561 75098997 MLT2A1 477 + 0 477 81481 142 0 1 25 1 5 33 0 1 113 10 9 54 4 40 54 chain 9502 chr5 180915260 + 75098997 75099104 L1PREC2 3366 + 2009 2116 163068 107 chain 409446 chr5 180915260 + 75104477 75110114 L1PB1 5432 - 14 5400 9818 14 1 0 13 1 0 21 1 0 24 24 19 19 45 31 39 4 3 14 9 3 17 0 1 30 3 1 11 4 0 12 1 0 6 1 0 26 175 15 235 18 17 18 15 19 86 3 0 32 5 0 66 38 6 209 9 3 134 1 0 170 5 6 363 7 9 433 3 2 449 1 0 5 1 0 286 1 5 53 2 0 114 0 4 222 0 5 241 5 0 144 32 1 192 4 8 165 2 0 157 0 1 9 0 2 258 2 0 186 7 0 7 0 6 12 0 4 152 0 1 38 0 3 85 0 1 61 5 7 10 0 1 364 chain 259454 chr5 180915260 + 75114898 75118588 L1PA7 6471 + 3247 6457 15734 145 519 0 157 0 4 16 4 9 469 2 1 246 4 0 54 0 3 13 0 1 120 0 11 88 0 8 346 0 1 10 4 0 139 0 21 77 0 1 139 12 0 212 0 2 8 12 10 67 0 5 827 chain 44575 chr5 180915260 + 75115051 75115545 SVA_D 2077 + 1577 2072 63503 5 0 1 49 0 1 133 1 0 306 chain 39466 chr5 180915260 + 75128681 75129189 L1P3 4156 - 17 527 70060 23 1 0 11 2 0 235 0 4 163 0 1 73 chain 109530 chr5 180915260 + 75135803 75137049 L1PA4 6152 - 1 1242 34311 5 2 0 114 8 0 28 1 4 81 0 2 1007 chain 22208 chr5 180915260 + 75137056 75137321 L1PA4 6152 - 9 292 119313 39 0 3 209 0 15 17 chain 27668 chr5 180915260 + 75146489 75146883 MER83 447 - 48 447 94155 150 0 1 27 15 20 40 14 13 148 chain 10539 chr5 180915260 + 75151307 75151470 Tigger1 2417 + 66 231 158101 24 22 21 73 0 3 44 chain 48165 chr5 180915260 + 75155347 75155927 LTR14C 587 + 0 580 60348 223 6 0 7 0 6 56 1 0 79 0 1 208 chain 63652 chr5 180915260 + 75165469 75166702 L1M1 2793 + 543 1659 51169 11 2 0 9 179 100 37 36 26 12 13 10 11 31 25 18 1 0 29 2 0 8 1 0 54 24 21 89 5 4 20 0 1 10 2 0 93 0 1 50 7 6 83 7 0 244 1 0 144 chain 7280 chr5 180915260 + 75167701 75167781 L1PA3long 6157 - 2 82 175582 80 chain 14023 chr5 180915260 + 75168588 75168744 L1PA4 6152 + 5995 6151 144493 156 chain 132188 chr5 180915260 + 75169529 75171455 L1PA14 3548 + 1569 3448 27592 98 13 18 77 2 1 4 0 1 241 0 1 163 3 1 115 0 1 245 8 5 56 4 5 88 1 0 161 0 1 54 39 15 18 3 1 14 2 0 47 11 7 109 6 2 13 2 0 6 1 0 84 1 0 107 20 15 30 10 8 12 7 5 16 1 0 34 chain 70607 chr5 180915260 + 75177292 75178064 L1PA3long 6157 - 1669 2442 48019 4 0 1 768 chain 144480 chr5 180915260 + 75178064 75179666 L1PA3long 6157 + 4484 6151 25402 125 0 1 430 2 62 656 0 3 62 0 1 327 chain 6127 chr5 180915260 + 75182945 75183289 L1MA8 2339 - 15 305 184211 11 3 2 12 55 33 10 1 0 24 155 132 7 7 0 59 chain 39001 chr5 180915260 + 75184925 75185419 L1PA8 5853 - 0 491 70745 91 5 8 13 2 1 52 1 0 9 2 1 68 2 0 46 1 0 202 chain 550045 chr5 180915260 + 75191890 75198059 L1PA3long 6157 - 0 6152 1440 558 4 0 614 0 1 1038 1 2 1174 0 3 580 0 2 139 5 6 515 22 1 1519 chain 24655 chr5 180915260 + 75210648 75211004 THE1B 368 - 2 368 106695 123 38 47 28 1 0 58 0 2 108 chain 58338 chr5 180915260 + 75218990 75219869 L1PB2 3958 + 2967 3838 53785 119 4 0 44 15 16 96 0 1 43 2 0 5 1 4 11 3 1 56 1 0 6 1 3 67 2 0 12 2 0 87 0 3 50 1 0 27 1 0 63 1 0 43 0 1 15 15 13 22 1 0 63 chain 39839 chr5 180915260 + 75228192 75228681 MER9B 498 - 0 494 69560 55 0 1 33 2 4 36 0 2 363 chain 5936 chr5 180915260 + 75250185 75250251 L1PA3long 6157 - 2136 2202 183542 66 chain 194242 chr5 180915260 + 75250251 75252379 L1PA3long 6157 + 4027 6155 19651 1940 0 1 4 1 0 183 chain 7136 chr5 180915260 + 75254078 75254182 MLT2B4 540 + 0 104 176506 20 0 1 49 8 7 27 chain 538817 chr5 180915260 + 75263033 75269160 L1PA4 6152 + 11 6151 3023 37 0 12 759 2 1 190 9 5 513 2 3 669 0 2 173 0 1 2739 1 0 238 0 1 458 0 1 187 1 2 149 chain 21275 chr5 180915260 + 75277819 75278062 L1PA2 6032 + 5783 6032 122943 228 1 7 14 chain 11273 chr5 180915260 + 75286511 75286638 L1PA5 6144 + 6015 6142 155149 127 chain 106295 chr5 180915260 + 75291908 75293091 L1PA4 6152 - 1099 2284 35185 267 0 1 881 0 1 35 chain 4070 chr5 180915260 + 75293094 75293139 L1PA4 6152 + 5070 5115 206313 45 chain 92043 chr5 180915260 + 75293140 75294177 L1PA4 6152 + 5115 6152 38962 1037 chain 7648 chr5 180915260 + 75294532 75294621 MLT2B1 522 + 366 455 173240 89 chain 26281 chr5 180915260 + 75294717 75295076 THE1B 368 - 0 368 98898 75 1 0 94 13 9 5 1 0 4 0 1 8 1 0 117 0 15 40 chain 5060 chr5 180915260 + 75295945 75296005 MLT2B1 522 - 404 464 194536 60 chain 8484 chr5 180915260 + 75298015 75298128 L1PB2 3958 - 120 230 168385 63 1 0 26 2 0 21 chain 29900 chr5 180915260 + 75298732 75299113 THE1C 375 + 0 375 85097 50 0 1 251 7 0 73 chain 169855 chr5 180915260 + 75307444 75309462 L1PA7 6471 - 5 2031 22069 8 0 2 85 0 1 231 1 2 113 1 2 398 0 3 262 1 2 378 1 0 539 chain 527105 chr5 180915260 + 75328077 75334018 L1PA3long 6157 - 0 6083 4492 51 0 1 8 0 2 493 8 9 2147 0 1 139 0 1 134 4 1 108 4 5 272 0 4 395 0 2 1344 1 0 131 0 128 284 0 2 93 0 2 246 0 1 79 chain 15746 chr5 180915260 + 75341171 75341371 L1PA10 4194 - 33 229 139122 11 1 0 34 3 0 151 chain 2671 chr5 180915260 + 75343518 75343548 L1MA8 2339 + 2163 2193 230759 30 chain 250490 chr5 180915260 + 75349817 75353044 L1PA8 5853 - 2 3224 16211 91 2 0 19 2 1 36 10 11 11 1 0 74 2 0 36 13 12 551 6 0 520 2 3 167 1 2 458 4 8 177 0 2 334 0 1 34 0 5 80 21 0 255 0 8 12 5 9 5 4 0 9 1 6 31 0 1 253 chain 25367 chr5 180915260 + 75353055 75353345 L1PA5 6144 - 0 290 102846 290 chain 49660 chr5 180915260 + 75361873 75362435 L1PA5 6144 + 5584 6139 59262 406 7 0 149 chain 59693 chr5 180915260 + 75368422 75369224 L1PB1 5432 - 444 1263 52996 89 0 1 90 5 9 158 9 13 97 8 12 40 0 4 306 chain 13510 chr5 180915260 + 75369374 75369703 L1PB1 5432 + 5114 5412 146325 24 1 0 8 1 0 12 18 12 50 27 25 36 1 0 8 20 9 10 1 0 18 26 21 23 1 0 22 1 0 8 0 1 5 2 0 6 chain 198562 chr5 180915260 + 75416194 75418386 L1PA3long 6157 - 0 2191 19313 121 2 0 5 4 6 1390 1 0 669 chain 97934 chr5 180915260 + 75418386 75419497 L1PA3long 6157 + 2831 3945 37273 333 0 4 138 7 0 620 0 6 13 chain 6046 chr5 180915260 + 75432481 75432552 L1PA8 5853 + 5782 5853 184839 71 chain 9297 chr5 180915260 + 75435681 75435781 AluYb8 318 - 6 106 164076 100 chain 43163 chr5 180915260 + 75442023 75442564 MER41A 554 - 0 554 65216 14 0 2 65 5 12 53 0 4 404 chain 3569 chr5 180915260 + 75444840 75444885 MER53 195 + 114 159 214145 45 chain 17205 chr5 180915260 + 75460592 75460859 MER2 342 - 1 260 135023 17 18 10 13 6 7 185 1 0 27 chain 129877 chr5 180915260 + 75466928 75468889 SVA_F 1814 + 335 1812 28114 429 0 40 62 52 0 14 0 2 10 1 0 56 353 14 208 4 0 17 130 0 625 chain 12557 chr5 180915260 + 75467555 75467777 SVA_F 1814 + 966 1138 91163 125 50 0 47 chain 2141 chr5 180915260 + 75467680 75467705 SVA_F 1814 + 1267 1291 120177 7 1 0 17 chain 2573 chr5 180915260 + 75467777 75467804 SVA_F 1814 + 1011 1038 176423 27 chain 7754 chr5 180915260 + 75467817 75467900 SVA_F 1814 + 1177 1260 172581 83 chain 2083 chr5 180915260 + 75468135 75468213 SVA_F 1814 + 1011 1089 134828 78 chain 4497 chr5 180915260 + 75468213 75468263 SVA_F 1814 + 962 1011 150586 39 1 0 10 chain 3743 chr5 180915260 + 75479194 75479234 MSTB 430 - 331 371 211279 40 chain 40009 chr5 180915260 + 75514070 75514589 L1PA8 5853 + 5334 5853 69307 228 1 0 46 2 0 71 2 1 44 0 6 10 2 1 19 1 0 93 chain 227918 chr5 180915260 + 75527261 75529745 L1PA2 6032 - 0 2484 17425 2484 chain 458123 chr5 180915260 + 75555270 75561012 L1PA8 5853 - 0 5745 8468 92 2 1 19 2 1 78 1 0 54 2 0 46 2 1 87 0 1 28 0 1 151 0 1 4 1 0 11 0 1 25 0 1 53 0 2 181 10 8 11 0 1 624 0 1 35 8 7 112 0 1 457 5 4 48 0 1 393 2 1 136 0 7 105 0 1 179 1 0 70 0 9 43 0 1 11 3 0 726 31 0 13 4 1 19 0 1 131 0 1 303 0 4 35 12 47 96 7 0 249 4 5 352 0 1 462 12 0 194 chain 48596 chr5 180915260 + 75577917 75578528 LTR66 600 - 1 600 60039 95 17 0 31 1 0 61 1 7 405 chain 29794 chr5 180915260 + 75582448 75582827 THE1C 375 - 0 375 85456 25 1 0 230 3 0 120 chain 7917 chr5 180915260 + 75602898 75603001 L1MDa 1598 - 654 757 171540 103 chain 151355 chr5 180915260 + 75617988 75619822 L1PA8A 6298 + 4455 6289 24419 88 1 2 59 0 1 4 1 0 559 0 1 320 3 2 108 0 1 406 1 0 172 2 1 110 chain 116413 chr5 180915260 + 75631247 75632583 SVA_D 2077 - 0 1891 32309 535 0 352 152 0 1 35 0 86 149 0 116 465 chain 24101 chr5 180915260 + 75635267 75635562 AluY 311 + 10 306 109738 122 10 11 163 chain 42782 chr5 180915260 + 75635648 75636256 MER41B 635 + 0 611 65679 53 0 1 39 1 0 31 7 8 44 1 0 275 16 15 108 8 12 25 chain 40328 chr5 180915260 + 75653080 75653530 LTR7 482 + 0 482 68838 225 0 1 38 0 31 187 chain 300190 chr5 180915260 + 75653532 75657187 HERVH-int 3825 + 0 3816 13415 212 0 11 155 0 4 149 5 0 39 1 0 10 1 0 24 30 0 14 1 0 13 24 0 26 63 0 35 0 20 17 2 1 48 0 3 243 0 3 196 15 0 460 8 33 1370 0 3 31 8 218 249 0 19 168 0 4 38 chain 38728 chr5 180915260 + 75658450 75658896 LTR7 482 + 0 482 71111 144 0 3 116 1 32 95 0 2 90 chain 7954 chr5 180915260 + 75666768 75666871 MER21A 919 - 501 605 171309 14 0 1 89 chain 4472 chr5 180915260 + 75689506 75689571 LTR56 451 + 8 70 201093 5 1 0 4 1 0 48 1 0 5 chain 24874 chr5 180915260 + 75691804 75692470 LTR23 429 - 21 393 105492 129 0 6 10 4 0 22 0 1 91 0 1 9 316 0 33 2 6 7 0 4 29 0 10 14 chain 3129 chr5 180915260 + 75708679 75708712 MIR 256 + 103 136 222361 33 chain 140773 chr5 180915260 + 75730221 75732301 L1PB3 3668 - 48 2065 26024 6 1 0 15 42 33 37 3 1 25 1 0 8 38 20 70 28 17 98 1 0 114 7 8 55 0 3 112 10 1 7 0 2 159 2 8 151 0 3 72 5 6 39 1 5 10 14 19 191 0 1 201 46 8 164 0 2 216 1 0 130 chain 28228 chr5 180915260 + 75742978 75743304 LTR17 781 + 0 326 92200 326 chain 66067 chr5 180915260 + 75750115 75750852 L1PA4 6152 - 0 734 50067 5 2 0 255 1 0 474 chain 36116 chr5 180915260 + 75773263 75774314 Tigger3b 1229 + 58 858 74748 33 8 44 33 0 4 79 2 6 27 13 18 25 3 0 6 48 53 39 0 16 57 14 15 58 3 0 7 1 3 39 3 4 18 51 69 57 348 11 79 chain 11057 chr5 180915260 + 75816163 75816285 AluSp 311 - 188 310 155977 122 chain 128541 chr5 180915260 + 75846177 75847693 SVA_B 1603 - 0 1602 28439 601 8 44 7 0 42 26 4 0 13 2 1 5 1 0 213 9 0 599 6 13 10 0 16 12 chain 7513 chr5 180915260 + 75847921 75848065 MLT1B-int 1170 - 445 591 174077 37 6 0 31 31 39 39 chain 40289 chr5 180915260 + 75899805 75900332 L1PA7 6471 - 1 541 68893 166 18 15 75 0 1 7 0 2 73 3 0 110 0 1 47 3 18 25 chain 15813 chr5 180915260 + 75917726 75917918 MER107 203 + 0 203 138918 160 1 12 31 chain 69623 chr5 180915260 + 75940678 75941496 L1PA7 6471 - 2 823 48562 26 0 1 466 0 1 126 1 0 149 0 2 50 chain 12256 chr5 180915260 + 75946450 75946595 L1PA6 6164 - 3 145 151179 9 3 0 133 chain 22577 chr5 180915260 + 75952036 75952305 AluYk4 311 - 1 311 117688 80 0 41 189 chain 21802 chr5 180915260 + 75968646 75968890 L1PA3long 6157 + 5904 6157 121011 41 0 9 203 chain 37332 chr5 180915260 + 76007313 76007780 MER9a3 513 + 20 513 73048 159 0 1 43 0 3 86 1 21 4 0 1 95 1 2 78 chain 25373 chr5 180915260 + 76022075 76022376 AluYk4 311 + 1 296 102819 232 6 0 63 chain 18143 chr5 180915260 + 76036738 76037027 LTR23 429 + 131 414 132487 112 0 1 28 23 25 41 17 8 68 chain 18532 chr5 180915260 + 76037071 76037413 L1PA15 4387 + 4046 4366 131423 28 3 0 30 1 0 27 1 0 54 1 0 16 12 8 8 1 0 47 9 6 42 33 26 17 1 0 11 chain 25798 chr5 180915260 + 76055693 76055979 AluYf4 310 + 24 309 100883 101 1 0 184 chain 23377 chr5 180915260 + 76056993 76057666 THE1B 368 + 0 368 113775 44 1 16 47 0 1 64 323 2 25 4 0 77 17 21 71 chain 41203 chr5 180915260 + 76076650 76077175 MER41A 554 + 0 542 67644 88 0 5 119 6 19 83 1 0 228 chain 17581 chr5 180915260 + 76080044 76080256 MER4D1 891 - 555 767 134052 212 chain 44121 chr5 180915260 + 76088248 76089441 MER41A 554 - 0 554 64054 122 0 1 59 326 0 168 2 1 17 316 0 118 0 3 65 chain 3148 chr5 180915260 + 76097416 76097453 L2a 937 - 620 657 221955 37 chain 175423 chr5 180915260 + 76107393 76109499 SVA_D 2077 + 6 2068 21404 16 8 0 898 1 87 27 1 0 9 0 1 140 42 0 203 76 1 13 4 0 44 1 0 623 chain 3568 chr5 180915260 + 76108493 76108535 SVA_D 2077 + 1311 1409 81768 40 1 57 1 chain 3600 chr5 180915260 + 76108738 76108783 SVA_D 2077 + 1084 1128 134827 31 8 7 6 chain 1982 chr5 180915260 + 76108783 76108814 SVA_D 2077 + 1255 1286 73312 31 chain 25339 chr5 180915260 + 76133472 76133780 AluY 311 + 2 305 103025 130 0 1 166 6 0 6 chain 33942 chr5 180915260 + 76135134 76136377 MER4A1 472 + 0 472 77703 90 0 3 36 339 0 118 0 21 76 0 2 6 458 0 120 chain 38956 chr5 180915260 + 76139152 76140000 MER41A 554 - 0 554 70795 81 0 5 62 0 2 197 1 2 59 311 0 53 1 6 55 1 5 27 chain 43945 chr5 180915260 + 76140992 76141537 MER9a2 513 + 0 513 64270 289 32 0 224 chain 15704 chr5 180915260 + 76158057 76158315 MER51E 476 + 6 266 139253 45 48 15 62 3 38 100 chain 28598 chr5 180915260 + 76175739 76176157 LTR7B 505 - 14 505 90743 33 18 17 51 1 2 26 1 0 82 11 13 15 3 27 12 0 38 57 0 10 108 chain 244455 chr5 180915260 + 76177946 76182337 HERVH-int 3825 - 259 3747 16535 271 1 0 35 28 30 90 0 1 123 1 0 104 0 1 63 0 1 58 12 1 89 1 3 394 0 1 205 5 10 306 0 1 116 0 1 37 0 1 47 5 0 102 345 10 36 14 4 201 15 0 30 50 52 296 0 3 48 693 3 13 1 0 29 0 209 6 1 0 12 17 10 23 0 1 4 2 0 10 57 2 100 1 2 38 1 0 255 chain 2664 chr5 180915260 + 76181077 76181116 HERVH-int 3825 - 3038 3075 230871 7 2 0 30 chain 32069 chr5 180915260 + 76182422 76182842 LTR7B 505 - 10 503 80737 41 16 15 52 0 1 24 1 0 82 0 2 22 1 0 6 0 25 12 0 38 60 0 10 103 chain 4499 chr5 180915260 + 76184109 76184158 LTR9B 643 + 18 67 200792 49 chain 19637 chr5 180915260 + 76189927 76190301 MER4E 760 + 340 753 128291 20 93 94 60 4 37 80 1 7 90 5 4 21 chain 152424 chr5 180915260 + 76192762 76195968 L1MA1 4479 - 361 4235 24292 11 2 0 11 0 369 11 2 1 68 1 2 126 329 0 88 0 3 29 13 9 78 13 8 41 5 0 10 5 2 73 4 0 21 12 10 165 3 1 23 1 0 63 320 0 29 1 0 62 1 0 31 2 0 23 0 4 78 1 0 66 1 0 19 0 4 41 9 12 38 6 9 38 323 1267 162 8 7 53 0 1 34 1 0 100 0 5 24 0 5 5 0 2 12 3 2 163 0 5 160 0 4 8 0 4 139 2 0 35 chain 381784 chr5 180915260 + 76203972 76208593 HERV9-int 5642 + 156 4825 10708 111 0 1 389 6 1 138 1 0 296 81 0 14 3 0 930 0 1 1812 7 137 151 5 9 164 12 13 292 2 0 86 0 4 6 1 0 114 chain 51794 chr5 180915260 + 76210083 76210845 LTR12_ 688 + 0 688 57760 49 0 1 5 0 41 42 25 8 208 103 0 231 0 4 99 chain 84000 chr5 180915260 + 76240783 76241775 LTR5B 1012 + 0 1012 41904 134 0 14 126 1 8 207 1 0 523 chain 22272 chr5 180915260 + 76252285 76252564 AluY 311 + 7 297 119022 119 0 1 52 0 11 86 2 1 20 chain 24046 chr5 180915260 + 76253226 76253508 AluSg7 307 - 24 307 110073 156 0 1 126 chain 9717 chr5 180915260 + 76260855 76261059 MER2 342 + 132 317 161997 95 48 36 37 13 6 11 chain 16137 chr5 180915260 + 76261626 76261847 MER51C 639 - 1 221 137947 104 9 0 8 5 14 68 1 0 26 chain 165841 chr5 180915260 + 76279689 76281775 SVA_D 2077 - 0 2077 22534 136 0 20 480 49 0 40 9 8 4 0 1 37 1 0 4 0 1 133 1 0 32 0 1 8 10 37 4 0 1 92 0 2 88 38 0 4 50 0 27 2 1 25 0 40 218 0 40 210 0 4 326 6 0 17 3 1 18 0 3 14 chain 1853 chr5 180915260 + 76280869 76280897 SVA_D 2077 - 1226 1254 70665 13 1 0 8 0 1 6 chain 9876 chr5 180915260 + 76288555 76288773 MER30 238 - 2 238 161190 46 3 0 30 7 8 24 4 22 41 48 50 15 chain 25929 chr5 180915260 + 76294079 76294424 L1PA16 3655 + 3219 3561 100306 67 6 4 152 1 0 119 chain 138271 chr5 180915260 + 76337659 76340124 SVA_F 1814 - 26 1545 26439 358 0 2 154 694 0 312 0 15 32 269 0 646 chain 7051 chr5 180915260 + 76338171 76338258 SVA_F 1814 - 716 803 139463 87 chain 7233 chr5 180915260 + 76338259 76338374 SVA_F 1814 - 627 777 125970 17 1 0 49 1 0 24 0 37 23 chain 18224 chr5 180915260 + 76338374 76338818 SVA_F 1814 - 601 959 71600 26 1 0 10 2 0 166 1 0 10 1 0 39 0 16 59 97 0 32 chain 4785 chr5 180915260 + 76338700 76338786 SVA_F 1814 - 600 686 95945 86 chain 3530 chr5 180915260 + 76339223 76339309 SVA_F 1814 - 1352 1439 71600 25 3 5 40 5 4 13 chain 5745 chr5 180915260 + 76339326 76339398 SVA_F 1814 - 776 848 91235 72 chain 2800 chr5 180915260 + 76339447 76339478 SVA_F 1814 - 627 659 192637 16 0 1 15 chain 21599 chr5 180915260 + 76376493 76376757 L1PA6 6164 + 5884 6153 121772 128 3 8 133 chain 14977 chr5 180915260 + 76389928 76390132 HSMAR2 1300 - 0 213 141390 134 8 17 62 chain 34701 chr5 180915260 + 76402737 76403124 L1PA5 6144 - 9 396 76622 387 chain 183449 chr5 180915260 + 76408343 76410494 L1PA6 6164 + 3997 6162 20633 87 0 6 101 0 1 221 0 1 188 5 1 139 0 7 275 0 1 391 0 1 43 0 2 542 1 0 158 chain 22047 chr5 180915260 + 76422987 76423368 THE1D 372 + 4 371 120031 42 29 0 15 4 14 91 46 51 154 chain 4738 chr5 180915260 + 76441555 76441675 MLT1E2-int 388 + 165 279 198055 18 40 36 13 1 0 12 1 0 35 chain 37524 chr5 180915260 + 76487497 76488023 MER1A 529 - 0 528 72787 58 28 31 343 18 17 79 chain 8479 chr5 180915260 + 76493430 76493542 L1P3 4156 - 533 647 168404 19 0 1 81 1 2 11 chain 14941 chr5 180915260 + 76519061 76519220 L1PA3long 6157 - 0 159 141503 159 chain 120893 chr5 180915260 + 76564672 76566300 L1MA3 4352 - 487 2126 30729 224 5 0 199 0 1 37 7 8 9 0 1 179 0 1 149 32 32 27 5 8 398 13 12 76 0 5 36 0 1 7 12 17 124 2 1 87 chain 57242 chr5 180915260 + 76595098 76595727 L1PA4 6152 - 0 629 54372 629 chain 18402 chr5 180915260 + 76613685 76613902 AluSg7 307 + 84 302 131782 47 0 1 170 chain 2811 chr5 180915260 + 76651744 76651774 MER58A 224 + 53 83 228616 30 chain 21330 chr5 180915260 + 76669676 76669957 AluSp 311 - 16 295 122758 6 2 0 129 1 0 103 14 15 26 chain 522119 chr5 180915260 + 76678260 76685351 L1PA7 6471 - 3 6466 4945 106 0 4 36 1 2 10 5 0 15 7 0 127 0 4 33 1 0 23 7 5 482 1 0 27 0 2 87 0 3 28 0 5 46 52 0 474 2 0 82 1 0 191 5 11 104 0 1 33 0 4 37 0 1 861 0 1 75 4 11 40 28 17 70 0 4 92 0 1 153 305 0 518 1 3 174 4 0 71 284 0 388 21 11 273 0 1 482 0 4 18 0 4 256 1 2 340 0 2 5 2 0 162 1 3 40 0 1 301 3 1 95 chain 26193 chr5 180915260 + 76682690 76682963 AluYb8 318 - 1 274 99227 273 chain 4678 chr5 180915260 + 76719771 76719827 L1PA17 2846 - 248 304 198776 56 chain 240073 chr5 180915260 + 76740720 76743695 L1PA8A 6298 + 3284 6291 16772 82 1 0 43 1 8 136 3 7 238 0 2 8 1 4 413 0 1 223 1 0 224 0 2 150 2 0 375 8 11 229 4 0 32 0 4 12 0 3 27 0 2 19 0 5 161 12 10 112 10 8 9 0 1 193 2 0 72 11 12 62 1 9 98 chain 34673 chr5 180915260 + 76764810 76765201 L1PA5 6144 + 5728 6118 76660 151 1 0 239 chain 420126 chr5 180915260 + 76765495 76770260 L1PA4 6152 + 1375 6140 9530 65 1 0 11 0 4 967 0 1 160 0 2 931 2 1 114 0 5 712 0 4 434 23 0 761 0 10 486 1 0 97 chain 542014 chr5 180915260 + 76770633 76776649 L1PA3long 6157 + 4 6147 2502 148 0 1 373 4 0 255 0 128 340 1 0 197 1 0 2904 0 4 1793 chain 35575 chr5 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788 136 0 1 1419 0 2 1386 0 15 695 12 11 2334 2 0 149 chain 25414 chr5 180915260 + 76976879 76977234 THE1A 353 - 2 353 102619 217 17 15 6 0 2 17 1 0 29 4 1 64 chain 25063 chr5 180915260 + 76989352 76989648 AluSp 311 + 11 306 104493 66 1 0 229 chain 4026 chr5 180915260 + 76996566 76996610 L1PB1 5432 + 4135 4179 206978 44 chain 23673 chr5 180915260 + 76996610 76996953 L1PB1 5432 + 4180 4533 112186 146 7 9 18 10 13 114 13 18 35 chain 33466 chr5 180915260 + 76996953 76997420 L1PB1 5432 + 4534 5014 78468 92 3 0 97 0 3 36 5 4 82 1 0 32 7 20 53 6 8 53 chain 6127 chr5 180915260 + 76997422 76997496 L1PB1 5432 + 5020 5094 184213 74 chain 2102 chr5 180915260 + 76997655 76997687 L1PB1 5432 + 5108 5138 237616 6 1 0 11 1 0 13 chain 4042 chr5 180915260 + 76997717 76997777 L1PB1 5432 + 5162 5220 206768 6 2 0 52 chain 4731 chr5 180915260 + 76997779 76997836 L1PB1 5432 + 5221 5277 198157 15 1 0 41 chain 7074 chr5 180915260 + 76997881 76998005 L1PB1 5432 + 5308 5423 176922 19 8 5 14 2 0 27 1 0 18 1 0 13 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chain 11644 chr5 180915260 + 77166817 77167010 MER30 238 - 0 200 153720 39 3 0 67 28 38 56 chain 3211 chr5 180915260 + 77213069 77213103 MADE1 96 - 57 91 220725 34 chain 24843 chr5 180915260 + 77262519 77262904 THE1D 372 - 0 372 105662 32 1 0 57 16 0 59 1 0 33 23 29 105 2 1 56 chain 11014 chr5 180915260 + 77263010 77263147 AluY 311 + 1 132 156143 56 6 0 75 chain 19833 chr5 180915260 + 77293774 77294067 AluSc 308 - 6 297 127699 65 37 35 71 1 0 43 0 1 76 chain 13581 chr5 180915260 + 77334177 77334354 MER30 238 - 0 191 146049 110 7 21 60 chain 18766 chr5 180915260 + 77342023 77342298 MER1B 344 + 59 331 130783 21 10 8 132 4 0 47 11 14 50 chain 79905 chr5 180915260 + 77342528 77343492 L1PA7 6471 - 1 965 43636 105 1 0 159 0 2 504 0 2 77 3 0 115 chain 264787 chr5 180915260 + 77361682 77365641 L1PA10 4194 + 175 4150 15451 13 2 0 12 3 0 12 17 11 9 2 0 8 12 10 21 2 0 15 64 38 11 2 0 21 1 0 7 1 0 11 1 0 6 2 1 13 4 0 9 1 0 41 16 20 24 2 0 296 2 1 203 1 2 132 0 1 41 0 1 71 0 1 102 0 395 202 8 9 17 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15 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 452305 chr5 180915260 + 77465591 77471177 L1PA6 6164 - 8 6164 8683 821 0 1 4 1 0 11 8 1 7 0 32 287 1 0 495 1 0 116 2 1 61 1 0 4 0 1 9 2 0 611 1 0 167 1 2 18 0 1 4 0 3 232 0 3 72 1 2 11 58 30 312 1 2 10 1 0 17 7 11 398 0 11 133 0 565 267 0 1 405 1 0 208 22 5 232 3 5 35 0 3 248 0 1 142 0 1 137 chain 17622 chr5 180915260 + 77483375 77483581 L1PA10 4194 + 3904 4110 133930 206 chain 2786 chr5 180915260 + 77483591 77483623 L1PA10 4194 + 4118 4150 228916 32 chain 10108 chr5 180915260 + 77534341 77534501 Tigger3a 397 - 136 355 160058 103 24 83 33 chain 46083 chr5 180915260 + 77540846 77541399 LTR14 556 - 0 556 61961 83 0 4 6 1 0 20 6 5 369 0 1 68 chain 7219 chr5 180915260 + 77543839 77543917 LTR14 556 - 229 307 175946 78 chain 268960 chr5 180915260 + 77550276 77554167 L1MA1 4479 + 228 4184 15234 52 2 1 25 15 26 8 1 0 12 0 1 4 2 1 52 0 3 7 0 2 6 0 4 249 1 4 12 1 5 186 0 1 61 0 1 9 0 3 131 11 12 47 2 1 102 8 9 8 1 0 47 0 3 133 1 0 43 0 1 12 0 4 30 2 1 148 1 5 144 0 65 180 0 2 27 0 2 54 1 0 7 0 1 91 2 0 103 28 26 119 1 4 72 2 0 5 1 0 60 9 8 101 2 0 33 1 0 62 1 0 59 1 0 33 1 0 27 2 0 94 1 2 75 3 1 18 4 0 75 2 1 12 5 0 42 11 6 78 3 0 128 2 0 128 1 2 5 0 1 62 1 0 18 18 22 25 0 2 38 11 10 16 2 0 13 1 0 88 1 0 5 3 0 126 1 0 27 17 14 4 0 1 15 1 0 13 1 0 10 3 1 9 2 0 12 chain 26102 chr5 180915260 + 77574177 77574449 AluYa5 310 + 36 308 99612 272 chain 16739 chr5 180915260 + 77595293 77595625 THE1C 375 + 2 331 136285 11 2 0 25 35 26 114 63 71 82 chain 17659 chr5 180915260 + 77595670 77595909 THE1C-int 1605 + 0 292 133809 39 7 6 107 1 55 85 chain 17657 chr5 180915260 + 77595909 77596269 THE1B 368 - 0 368 133822 55 105 0 11 4 114 19 1 0 116 0 6 32 2 0 15 chain 24960 chr5 180915260 + 77609263 77609549 AluSp 311 + 12 297 105003 120 1 0 165 chain 16727 chr5 180915260 + 77660627 77660834 L1PA5 6144 + 5903 6120 136321 97 7 13 75 0 4 28 chain 4808 chr5 180915260 + 77664833 77664898 Tigger1 2417 - 2010 2074 197265 60 1 0 4 chain 16535 chr5 180915260 + 77671859 77672075 MER11A 1151 + 930 1151 136825 152 0 1 16 1 2 5 0 3 42 chain 3262 chr5 180915260 + 77676556 77676592 Tigger1 2417 - 2186 2222 219766 36 chain 16188 chr5 180915260 + 77678265 77678599 L1PB1 5432 - 10 318 137791 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 6 2 0 15 43 30 45 1 4 11 2 1 43 0 1 8 2 0 9 2 0 3 2 0 10 1 0 12 1 0 20 chain 124751 chr5 180915260 + 77686477 77687882 SVA_D 2077 - 0 2077 29463 535 0 225 263 1 138 105 0 310 459 0 5 6 0 8 12 13 0 11 chain 36021 chr5 180915260 + 77706484 77707106 L1PA11 4918 - 289 881 74870 18 47 33 11 2 0 13 1 0 15 13 9 10 8 3 9 4 0 18 4 3 15 2 0 66 4 5 6 1 0 59 3 5 187 0 1 106 chain 61821 chr5 180915260 + 77721616 77722426 L1PA8 5853 - 0 820 51983 93 1 0 19 2 1 61 1 0 57 0 1 13 2 0 44 1 0 42 1 0 197 1 2 80 0 3 48 0 3 6 1 0 5 8 9 85 0 6 20 0 3 22 chain 511416 chr5 180915260 + 77731066 77737155 L1PA6 6164 - 4 6160 6033 155 4 14 675 0 4 19 7 6 479 2 0 6 0 2 22 0 1 128 1 0 284 0 4 142 0 8 517 1 0 376 0 1 127 0 1 857 1 2 890 0 11 125 2 1 71 0 3 265 0 25 85 0 2 342 2 1 312 0 1 192 chain 554375 chr5 180915260 + 77748008 77754033 L1PA2 6032 - 2 6031 900 148 4 0 365 0 1 235 1 4 1047 0 4 4225 chain 51099 chr5 180915260 + 77756243 77758154 L1PA17 2846 - 153 1335 58253 61 1 0 17 0 3 12 11 12 55 1 0 23 1 0 11 11 7 86 444 4 25 0 9 193 6 7 135 0 5 13 702 401 103 chain 12110 chr5 180915260 + 77768079 77768224 L1PA7 6471 - 15 162 151763 46 0 2 99 chain 7589 chr5 180915260 + 77769404 77769576 L1PA16 3655 - 36 180 173619 15 69 41 88 chain 23423 chr5 180915260 + 77813263 77813625 THE1B 368 - 0 368 113512 118 29 27 9 0 4 10 7 10 21 1 0 25 4 5 102 0 1 36 chain 9482 chr5 180915260 + 77825382 77825482 AluYb8 318 + 205 305 163153 100 chain 2792 chr5 180915260 + 77826764 77826812 MLT1J 494 + 0 47 228860 16 7 6 25 chain 3560 chr5 180915260 + 77833928 77833971 MER5A1 166 + 95 138 214337 43 chain 5941 chr5 180915260 + 77852785 77852853 L1PA5 6144 - 2 70 185772 68 chain 530050 chr5 180915260 + 77875168 77881451 L1PA3long 6157 - 1 6153 4181 128 9 16 10 7 0 238 1 0 150 5 0 322 0 4 488 1 0 491 0 56 307 0 2 634 0 1 46 0 4 865 0 4 1486 0 128 34 1 0 415 323 0 167 6 7 149 chain 28837 chr5 180915260 + 77880818 77881129 AluYa5 310 - 0 310 89735 217 1 0 93 chain 81019 chr5 180915260 + 77915326 77916208 L1PA3long 6157 - 0 878 43186 196 4 0 682 chain 128254 chr5 180915260 + 77968655 77970943 L1PB1 5432 - 8 1948 28506 4 1 0 15 2 1 12 1 0 22 1 0 24 2 0 13 9 6 19 13 4 8 3 0 15 1 0 41 22 20 51 2 0 8 20 14 13 10 9 11 419 77 66 5 16 140 3 11 97 0 2 84 10 7 57 8 7 261 4 14 68 0 2 37 0 4 311 0 1 82 6 7 35 9 1 243 chain 538616 chr5 180915260 + 77977786 77983899 L1PA5 6144 + 3 6144 3050 220 0 1 792 2 1 60 0 1 861 2 1 374 0 1 848 0 1 6 0 1 549 0 1 620 0 4 102 0 3 1075 0 14 454 2 5 146 chain 20671 chr5 180915260 + 77985833 77986199 THE1D 372 + 0 372 125070 38 3 4 89 1 0 34 77 84 91 1 0 32 chain 27967 chr5 180915260 + 77991872 77992238 THE1B 368 + 0 368 93118 15 2 0 22 0 5 130 3 2 194 chain 547159 chr5 180915260 + 78005581 78011716 L1PA4 6152 + 1 6151 1814 213 0 1 224 0 2 128 0 4 643 1 4 1563 0 1 1156 0 1 272 0 1 993 0 1 401 0 1 398 0 1 122 1 0 20 chain 41930 chr5 180915260 + 78025830 78026494 L1MA3 4352 - 0 628 66717 22 6 2 14 5 4 22 1 0 5 2 1 24 2 0 23 17 13 21 0 2 80 51 26 369 chain 7841 chr5 180915260 + 78066651 78066819 MER4C 627 - 0 161 172066 67 52 49 23 4 0 22 chain 8416 chr5 180915260 + 78087750 78087899 MER30 238 - 0 159 168746 26 16 13 72 11 23 4 0 1 20 chain 27586 chr5 180915260 + 78092704 78092999 AluYa5 310 - 15 309 94391 177 1 0 117 chain 552929 chr5 180915260 + 78143908 78150027 L1PA3long 6157 - 15 6151 1074 125 0 1 141 0 3 258 5 0 303 0 5 659 0 5 605 0 3 2046 0 4 908 0 1 1069 chain 28687 chr5 180915260 + 78155857 78156179 L1PA6 6164 - 3413 3735 89601 322 chain 289179 chr5 180915260 + 78156179 78159591 L1PA6 6164 + 2746 6162 14071 315 1 0 122 1 2 280 0 1 40 1 0 799 2 0 374 0 1 161 0 14 206 3 0 130 1 0 207 1 0 604 8 1 12 1 8 133 4 0 6 chain 24243 chr5 180915260 + 78160004 78160378 THE1B 368 - 0 368 108975 75 1 0 5 0 1 94 32 25 50 6 7 63 0 1 20 0 1 13 2 0 13 chain 119780 chr5 180915260 + 78160378 78161926 THE1B-int 1605 - 0 1592 31127 191 0 28 8 29 1 93 1 0 10 2 5 165 0 1 58 20 36 553 1 26 417 chain 553697 chr5 180915260 + 78162634 78168651 L1PA2 6032 + 7 6032 981 834 0 6 4319 0 1 706 1 2 157 chain 28053 chr5 180915260 + 78169321 78169617 AluYa5 310 - 14 310 92814 296 chain 84575 chr5 180915260 + 78205188 78206186 LTR5B 1012 + 0 1012 41687 54 1 0 80 0 14 265 1 0 590 0 2 7 chain 25945 chr5 180915260 + 78208944 78209246 AluYf4 310 - 7 309 100231 92 5 6 172 1 0 32 chain 542597 chr5 180915260 + 78235119 78241248 L1PA4 6152 - 14 6151 2407 142 1 0 193 0 1 507 0 1 247 3 0 382 1 2 630 0 3 1283 0 3 636 0 3 2104 chain 151664 chr5 180915260 + 78242055 78244226 L1MA3 4352 + 2219 4314 24377 42 0 1 50 2 1 105 18 1 93 22 0 74 2 1 25 0 1 765 2 1 8 2 0 9 6 7 512 7 8 56 0 2 112 42 15 5 3 0 123 4 0 13 44 40 25 chain 24090 chr5 180915260 + 78254824 78255156 THE1C 375 + 0 336 109801 186 0 1 60 6 7 32 6 8 42 chain 8869 chr5 180915260 + 78255262 78255401 LTR24B 570 + 430 570 166291 57 24 25 58 chain 29438 chr5 180915260 + 78276762 78277072 AluYa5 310 - 0 310 86903 310 chain 29517 chr5 180915260 + 78277737 78278045 AluYb8 318 - 10 318 86576 308 chain 29246 chr5 180915260 + 78307342 78307771 MSTA 426 - 0 424 87814 138 20 16 29 4 5 32 12 10 67 1 0 102 0 1 24 chain 81164 chr5 180915260 + 78334624 78335525 L1PA3long 6157 + 5240 6142 43107 583 0 1 318 chain 12533 chr5 180915260 + 78360872 78361025 Tigger3b 1229 - 671 823 150110 87 1 0 65 chain 542511 chr5 180915260 + 78391722 78397731 L1PA3long 6157 - 2 6157 2422 18 0 2 1365 0 1 667 0 4 926 0 1 2238 0 4 25 0 128 62 0 7 92 2 0 460 3 4 151 chain 53402 chr5 180915260 + 78454580 78457713 L1MA4 2864 + 1222 2809 56756 129 1 0 115 1231 348 36 28 35 127 15 9 92 6 5 72 1 0 44 8 6 63 0 1 30 55 44 21 2 1 35 33 34 17 933 285 24 1 0 14 chain 22727 chr5 180915260 + 78462329 78462629 AluY 311 + 11 306 116940 116 5 0 47 19 19 113 chain 4268 chr5 180915260 + 78463263 78463311 MSTA 426 + 376 424 203638 48 chain 9243 chr5 180915260 + 78466057 78466157 HY3 101 - 0 100 164334 100 chain 20164 chr5 180915260 + 78498491 78498753 AluSg7 307 - 40 299 126630 29 13 9 96 1 2 123 chain 25126 chr5 180915260 + 78527126 78527423 AluSp 311 - 5 302 104148 297 chain 18910 chr5 180915260 + 78549412 78551849 L1M1 2793 - 821 2303 130338 21 0 4 43 1 6 50 1692 856 43 6 0 28 31 28 54 1 0 8 2 0 28 1 0 22 21 16 16 238 150 11 3 0 9 2 1 8 1 0 10 12 7 13 1 0 6 1 0 14 7 0 10 1 0 11 1 0 5 1 0 4 chain 3060 chr5 180915260 + 78554906 78554940 MER52D 1964 - 821 855 223822 34 chain 3430 chr5 180915260 + 78554954 78555136 MER52D 1964 - 757 812 216572 24 128 0 19 0 1 11 chain 25776 chr5 180915260 + 78556858 78557188 PRIMA4_LTR 623 + 0 332 100985 84 1 5 99 4 0 87 0 2 55 chain 460073 chr5 180915260 + 78631582 78636937 L1PA6 6164 - 2 5386 8395 133 6 14 12 7 0 471 0 15 148 0 3 566 0 1 116 0 3 54 1 0 260 0 4 317 0 3 545 0 1 45 0 1 260 0 1 4 1 0 723 8 0 128 0 1 384 0 1 600 19 20 21 0 1 261 0 1 101 0 1 164 chain 22979 chr5 180915260 + 78642930 78643227 AluSp 311 + 0 298 115722 72 2 0 38 0 1 29 8 9 9 0 1 139 chain 9111 chr5 180915260 + 78679031 78679208 L1MA4A 3247 + 154 324 165011 21 8 10 21 4 0 55 1 0 26 28 24 13 chain 28434 chr5 180915260 + 78731667 78731963 AluYb8 318 + 0 296 91452 296 chain 21659 chr5 180915260 + 78751099 78751451 THE1D 372 + 0 372 121546 67 11 12 22 1 0 32 1 6 25 26 23 5 0 2 25 4 20 133 chain 10274 chr5 180915260 + 78769068 78769260 MER30 238 + 31 238 159259 12 0 1 45 0 1 6 47 63 37 3 0 42 chain 14338 chr5 180915260 + 78797095 78797313 Tigger2a 444 + 212 437 143434 163 26 33 29 chain 10403 chr5 180915260 + 78799568 78799725 Tigger2a 444 - 225 388 158679 64 11 14 39 1 4 42 chain 7476 chr5 180915260 + 78830685 78830775 HY3 101 + 10 100 174294 90 chain 22998 chr5 180915260 + 78835478 78835784 AluY 311 + 16 296 115629 48 0 1 61 27 0 170 chain 48532 chr5 180915260 + 78855267 78855848 MER4E 760 + 0 572 60084 24 1 0 146 7 0 276 1 0 126 chain 6917 chr5 180915260 + 78858570 78858654 HY3 101 - 2 87 178058 20 0 1 64 chain 35402 chr5 180915260 + 78860029 78860531 LTR3B_ 500 + 0 500 75673 149 12 13 126 16 15 45 5 9 83 6 0 60 chain 10127 chr5 180915260 + 78863082 78863209 LTR23 429 - 6 134 159958 11 0 1 116 chain 5111 chr5 180915260 + 78866370 78866454 MER49 923 - 833 923 193963 58 12 18 14 chain 4190 chr5 180915260 + 78869569 78869621 MER34C_ 573 - 352 404 204705 52 chain 27019 chr5 180915260 + 78872357 78872754 LTR23 429 - 5 411 96218 12 0 1 132 1 0 55 20 19 88 20 29 16 0 1 53 chain 8648 chr5 180915260 + 78877167 78877306 LTR8 732 + 578 715 167479 47 25 23 67 chain 5726 chr5 180915260 + 78883978 78884039 LTR54B 464 + 16 77 187879 61 chain 162791 chr5 180915260 + 78893275 78896043 L1MA3 4352 - 147 2563 22965 31 305 1 60 81 51 6 0 1 146 8 4 278 25 39 22 0 2 52 6 11 55 6 5 60 1 0 134 1 0 178 1 0 218 0 1 118 9 6 7 0 3 120 2 1 13 5 0 70 13 13 90 38 7 50 1 0 20 2 1 17 2 1 67 0 2 106 5 1 20 0 10 39 26 25 254 chain 23790 chr5 180915260 + 78902908 78903199 AluSp 311 - 11 302 111530 291 chain 10347 chr5 180915260 + 78903406 78903557 MER30 238 + 47 230 158917 57 8 21 27 0 12 44 0 7 15 chain 14268 chr5 180915260 + 78983194 78983492 MER2 342 - 6 284 143655 11 5 6 15 3 0 5 10 5 65 14 15 25 3 5 62 3 0 42 23 10 12 chain 76469 chr5 180915260 + 79001823 79002697 MER11D 897 - 0 897 45228 287 1 24 586 chain 28673 chr5 180915260 + 79013707 79014009 AluYa8 305 - 3 305 90435 302 chain 16796 chr5 180915260 + 79014544 79014852 Tigger3a 397 + 13 384 136123 63 64 125 68 18 20 95 chain 542104 chr5 180915260 + 79059826 79066553 L1PA7 6471 - 1 6471 2488 330 1 0 69 0 10 436 0 4 1139 0 1 104 316 0 824 0 4 58 1 0 573 0 4 354 0 1 297 0 6 914 1 0 287 7 5 5 0 2 40 1 0 662 0 1 77 16 31 106 0 17 109 chain 567684 chr5 180915260 + 79074736 79080761 L1HS 6032 - 1 6026 47 6025 chain 4110 chr5 180915260 + 79104614 79104673 MSTD 398 + 341 398 205773 30 2 0 27 chain 32374 chr5 180915260 + 79175550 79175916 L1PA5 6144 - 5 370 80231 143 1 0 222 chain 8291 chr5 180915260 + 79185599 79185742 MER33 330 + 68 221 169456 15 4 8 25 13 17 18 0 2 68 chain 13197 chr5 180915260 + 79196346 79196599 L1PA11 4918 - 340 571 147479 11 2 0 13 1 0 15 31 22 9 4 0 20 2 1 15 2 0 65 2 0 13 2 1 46 chain 558566 chr5 180915260 + 79198125 79204260 L1PA3long 6157 + 6 6144 446 2370 0 1 2751 0 1 266 0 1 748 chain 458249 chr5 180915260 + 79206886 79212931 L1PA7 6471 + 71 6467 8464 104 95 89 22 86 283 152 5 15 14 6 8 5 2 0 30 1 76 31 54 56 90 1 22 58 0 21 173 34 38 319 11 12 260 1 3 280 1 0 408 1 2 247 0 4 82 0 5 344 0 1 159 0 12 430 1 2 275 1 0 4 0 1 277 0 1 402 1 6 55 1 0 671 2 1 686 10 11 143 4 0 6 chain 95960 chr5 180915260 + 79212986 79214403 L1PA13 3608 + 2191 3548 37832 222 1 2 484 7 8 70 0 2 150 1 0 31 1 0 79 0 1 33 2 0 19 8 9 34 1 0 56 9 5 48 8 4 18 1 0 24 80 31 14 4 1 12 chain 3204 chr5 180915260 + 79306430 79306470 LTR16A 446 - 20 60 220882 40 chain 28028 chr5 180915260 + 79306796 79307150 THE1B 368 + 0 368 92902 44 0 15 117 1 0 192 chain 24873 chr5 180915260 + 79341354 79341653 AluSp 311 - 13 311 105496 166 1 0 132 chain 90304 chr5 180915260 + 79358355 79359431 L1PA5 6144 - 2 1071 39534 7 6 0 785 0 5 58 5 4 11 6 1 198 chain 19689 chr5 180915260 + 79387807 79388056 AluSc8 310 + 18 271 128134 113 12 16 124 chain 65305 chr5 180915260 + 79407568 79408476 LTR5B 1012 + 31 1012 50423 97 7 21 216 10 9 102 10 45 33 11 38 15 27 22 119 0 2 47 0 1 214 chain 30152 chr5 180915260 + 79409318 79409672 THE1A 353 - 0 353 84327 242 1 0 111 chain 12582 chr5 180915260 + 79409976 79410123 THE1D 372 - 0 148 149915 32 0 1 115 chain 3144 chr5 180915260 + 79416655 79416699 MSTA 426 - 17 63 222075 28 1 3 15 chain 27361 chr5 180915260 + 79417981 79418377 MLT2A1 477 - 0 477 95075 55 0 1 4 0 34 56 12 51 61 10 11 24 0 1 7 3 0 124 0 8 40 chain 3137 chr5 180915260 + 79434447 79434551 L1MA8 2339 + 2235 2328 222227 21 1 0 8 49 39 25 chain 22175 chr5 180915260 + 79441569 79441835 AluSz6 309 + 19 285 119471 266 chain 22109 chr5 180915260 + 79466830 79467118 AluSg7 307 - 6 296 119744 146 3 6 7 3 0 10 0 2 119 chain 28123 chr5 180915260 + 79479269 79479723 LTR7Y 441 + 0 441 92560 17 36 16 70 9 0 57 68 84 197 chain 36809 chr5 180915260 + 79481326 79481775 LTR7 482 - 0 482 73787 38 0 1 10 13 14 122 0 31 266 chain 3630 chr5 180915260 + 79570883 79570934 AluJo 314 + 81 133 213150 30 2 3 19 chain 22535 chr5 180915260 + 79571535 79571809 AluSp 311 - 1 275 117869 274 chain 8928 chr5 180915260 + 79581148 79581272 L1MA9 1812 + 389 513 165994 17 1 2 25 1 0 80 chain 157931 chr5 180915260 + 79596364 79598167 SVA_D 2077 + 9 2076 23602 823 40 0 71 2 0 8 0 48 28 0 51 52 0 110 17 1 0 86 0 98 675 chain 9630 chr5 180915260 + 79599279 79599415 MER4D1 891 - 77 207 162439 85 10 0 10 0 4 31 chain 122979 chr5 180915260 + 79609025 79610408 L1PA5 6144 - 12 1391 30055 315 9 0 49 0 1 477 0 4 533 chain 38140 chr5 180915260 + 79610408 79610828 L1P1 4361 + 3424 3844 71800 420 chain 19365 chr5 180915260 + 79620456 79620717 AluSp 311 - 5 262 129036 12 4 0 139 19 19 87 chain 22728 chr5 180915260 + 79649729 79649990 AluY 311 + 24 287 116933 107 0 2 154 chain 8591 chr5 180915260 + 79650010 79650154 MLT1A0 366 - 226 366 167783 15 10 14 63 0 1 24 9 0 23 chain 22062 chr5 180915260 + 79661179 79661544 L1PA11 4918 - 351 692 119961 28 44 31 19 1 0 15 2 0 67 2 0 13 7 6 60 5 0 102 chain 7983 chr5 180915260 + 79661544 79661640 U6 107 - 0 96 171146 96 chain 530886 chr5 180915260 + 79686965 79693078 L1PA5 6144 - 0 6144 4096 11 1 2 148 5 11 196 2 1 398 5 4 253 0 1 260 0 9 501 0 6 89 1 0 146 0 1 527 0 1 826 0 1 556 0 2 123 0 1 164 1 0 4 0 1 481 0 5 884 0 4 7 4 0 520 chain 25411 chr5 180915260 + 79696173 79696498 THE1A 353 - 12 353 102629 182 2 0 123 5 23 13 chain 171107 chr5 180915260 + 79716120 79718036 L1PA5 6144 - 5 1921 21928 55 1 0 986 0 1 126 0 1 348 1 0 399 chain 485981 chr5 180915260 + 79723824 79729413 L1PA5 6144 + 3 6140 7523 89 0 525 1001 0 1 184 0 4 16 0 1 199 1 0 256 12 23 5 3 0 17 0 1 56 0 4 595 0 1 521 0 1 584 0 1 259 0 4 599 1 0 316 2 1 32 4 0 180 0 3 45 0 2 555 1 0 56 chain 6564 chr5 180915260 + 79731799 79731876 THE1D 372 + 194 275 180754 33 0 4 44 chain 23465 chr5 180915260 + 79758011 79758390 THE1D 372 - 0 361 113291 117 2 0 31 1 0 24 32 34 87 4 5 18 18 0 45 chain 77136 chr5 180915260 + 79766668 79767541 MER11D 897 + 0 897 44895 593 1 24 166 0 1 113 chain 70459 chr5 180915260 + 79788970 79789934 MER11A 1151 + 0 1151 48183 54 1 100 74 1 0 66 0 11 227 0 12 29 0 1 108 6 9 11 3 4 37 0 4 69 0 2 15 2 60 98 8 7 87 7 6 21 1 0 39 chain 16332 chr5 180915260 + 79793578 79793754 L1PA5 6144 + 5950 6126 137395 176 chain 106125 chr5 180915260 + 79824569 79825759 L1PA5 6144 + 2493 3684 35228 1045 0 1 145 chain 214107 chr5 180915260 + 79825759 79828197 L1PA5 6144 + 3686 6142 18222 1403 0 1 204 1 0 116 0 1 427 0 18 270 1 0 16 chain 223301 chr5 180915260 + 79828199 79831938 L1MA2 4263 + 643 3796 17697 16 0 3 128 11 15 238 4 5 61 1 3 204 5 6 14 8 12 11 322 1 63 302 0 28 8 11 70 0 4 6 11 10 323 3 4 366 1 0 65 10 11 4 1 0 207 3 1 20 0 4 76 0 1 10 23 21 236 4 6 33 0 1 54 1 0 127 0 6 5 0 1 31 2 4 65 11 13 138 0 1 194 8 7 75 1 0 96 0 3 35 chain 110707 chr5 180915260 + 79844354 79845959 L1PB1 5432 - 9 1542 34028 5 1 0 13 2 1 13 1 0 21 1 0 17 9 7 15 1 0 4 2 0 19 16 6 6 1 0 15 1 0 45 1 0 15 2 1 53 15 9 12 1 0 2 2 0 6 1 0 20 105 52 253 0 8 259 1 0 34 0 4 119 0 1 10 5 7 481 chain 4194 chr5 180915260 + 79849999 79850047 MER74A 558 - 11 59 204642 48 chain 155608 chr5 180915260 + 79875985 79878117 L1PA5 6144 - 0 1798 23909 434 0 1 415 1 0 296 321 0 238 0 1 162 18 0 102 0 4 145 chain 29490 chr5 180915260 + 79877144 79877452 AluYa5 310 - 2 310 86669 308 chain 17005 chr5 180915260 + 79893377 79893733 THE1D 372 + 0 372 135579 15 0 2 15 1 0 22 9 0 13 28 30 41 0 1 19 70 91 123 chain 22381 chr5 180915260 + 79902160 79902420 L1PA3long 6157 + 5895 6155 118585 207 0 1 41 1 0 11 chain 6058 chr5 180915260 + 79904312 79904394 MLT2B4 540 - 446 540 184759 34 0 4 13 0 8 35 chain 15696 chr5 180915260 + 79910278 79910503 MSTC 436 - 6 224 139280 37 9 8 46 0 1 65 1 0 55 6 0 6 chain 13898 chr5 180915260 + 79912971 79913132 AluSp 311 - 12 173 144923 161 chain 7807 chr5 180915260 + 79932869 79933090 L1MA8 2339 + 2119 2321 172265 45 4 1 28 12 5 10 7 11 14 2 0 21 3 0 9 44 36 22 chain 12013 chr5 180915260 + 79935000 79935180 MER30 238 - 0 202 152141 8 1 0 92 2 0 11 9 34 57 chain 25280 chr5 180915260 + 79938681 79939006 Tigger1 2417 + 1410 1748 103321 89 0 9 87 0 3 59 0 1 90 chain 22425 chr5 180915260 + 79948341 79948600 AluY 311 + 40 300 118355 92 0 1 167 chain 13670 chr5 180915260 + 79955118 79955404 L1MB8 1703 - 46 268 145703 30 9 0 25 71 14 17 1 3 133 chain 24372 chr5 180915260 + 79955893 79956329 THE1A 353 - 12 353 108244 108 72 0 123 1 0 13 0 6 11 28 0 57 1 0 4 0 1 18 chain 14871 chr5 180915260 + 79957906 79958128 Tigger3a 397 + 61 332 141712 14 14 64 153 3 0 33 0 2 5 chain 10255 chr5 180915260 + 79958312 79958770 MER65C 458 - 0 156 159353 38 309 9 102 2 0 7 chain 4456 chr5 180915260 + 79959607 79959677 MER51A 677 - 80 149 201284 27 7 6 36 chain 5951 chr5 180915260 + 79982384 79982457 L1MA3 4352 - 3791 3864 185666 73 chain 13001 chr5 180915260 + 79994482 79994637 L1PA5 6144 + 5845 5995 148246 131 2 0 10 3 0 9 chain 12357 chr5 180915260 + 79994637 79994774 L1PA5 6144 + 6001 6138 150811 137 chain 24380 chr5 180915260 + 80005156 80005465 AluY 311 + 0 297 108193 10 3 0 122 0 1 97 11 1 66 chain 3324 chr5 180915260 + 80028307 80028344 MER20 218 + 116 153 218495 37 chain 11874 chr5 180915260 + 80052922 80053145 L1MA3 4352 - 13 229 152726 8 3 0 3 1 0 10 0 1 17 4 5 7 1 0 6 1 0 24 2 0 22 4 0 62 5 8 43 chain 69458 chr5 180915260 + 80081164 80081963 L1PA3long 6157 + 5385 6149 48626 242 34 0 382 1 0 140 chain 4168 chr5 180915260 + 80117719 80117769 LTR40a 516 + 387 437 204996 50 chain 67866 chr5 180915260 + 80119533 80120275 SVA_C 1631 - 19 780 49303 548 0 1 59 0 1 67 0 17 68 chain 8176 chr5 180915260 + 80124899 80124999 MSTC 436 - 299 399 170090 100 chain 19379 chr5 180915260 + 80136422 80136659 L1PA6 6164 - 5 243 129003 154 2 3 34 0 1 4 1 0 42 chain 484018 chr5 180915260 + 80136728 80142868 L1PA5 6144 - 2 6143 7588 274 0 1 998 0 1 281 1 0 4 8 6 226 1 5 309 0 1 877 0 6 847 1 0 885 17 17 235 13 4 213 25 0 30 9 13 80 1 18 225 5 4 57 1 2 60 8 0 252 4 3 26 0 5 8 23 18 17 24 38 95 chain 30002 chr5 180915260 + 80152194 80152531 L1PA4 6152 + 5815 6152 84802 337 chain 60776 chr5 180915260 + 80159012 80160066 MER4E 760 - 4 760 52435 184 304 0 155 0 1 33 0 4 18 3 1 81 0 4 68 0 1 23 2 0 183 chain 72963 chr5 180915260 + 80198207 80199234 MER11B 1079 - 28 1079 47040 166 0 1 13 0 1 23 0 9 12 0 1 20 7 8 19 45 37 23 1 0 37 0 19 168 0 1 30 1 0 27 10 9 66 0 2 359 chain 4969 chr5 180915260 + 80219794 80219857 L1MD 993 + 530 592 195483 58 1 0 4 chain 53149 chr5 180915260 + 80239157 80239744 SVA_D 2077 - 4 589 56924 14 2 0 571 chain 17289 chr5 180915260 + 80243121 80243392 L1PA10 4194 - 33 290 134807 11 1 0 34 3 0 34 1 0 62 32 19 57 0 4 36 chain 53385 chr5 180915260 + 80247901 80248533 L1PA6 6164 + 5528 6162 56772 463 13 13 147 0 2 9 chain 44192 chr5 180915260 + 80251820 80252359 MER41A 554 - 0 554 63954 105 0 3 220 0 1 31 0 11 183 chain 23023 chr5 180915260 + 80289941 80290202 AluY 311 + 39 300 115518 261 chain 26496 chr5 180915260 + 80310057 80310413 THE1B 368 - 0 368 98058 166 1 0 5 1 0 14 10 9 119 0 15 40 chain 528309 chr5 180915260 + 80324502 80331440 L1PA5 6144 + 0 6143 4374 135 6 20 509 0 1 363 1 2 4 1 0 35 4 7 92 10 1 314 0 3 702 0 1 527 0 1 715 0 1 139 0 3 1892 825 0 96 1 13 567 chain 73196 chr5 180915260 + 80329964 80330776 L1PA3long 6157 + 5343 6157 46926 664 0 2 148 chain 370856 chr5 180915260 + 80348946 80353100 L1PA5 6144 - 0 4153 11062 850 0 1 1461 1 0 156 1 0 3 1 0 366 1 4 1084 4 0 23 0 2 203 chain 8098 chr5 180915260 + 80374226 80374356 L1MA4 2864 - 171 298 170495 22 19 16 89 chain 4899 chr5 180915260 + 80374936 80375022 LTR67B 553 - 432 534 196281 50 18 34 18 chain 4289 chr5 180915260 + 80415081 80415153 MSTD 398 - 49 145 203357 19 6 7 19 0 23 28 chain 16510 chr5 180915260 + 80444467 80444653 L1PA3long 6157 + 5971 6157 136890 43 0 1 125 1 0 17 chain 20994 chr5 180915260 + 80453382 80453746 THE1D 372 - 0 372 123944 33 6 0 99 59 74 102 11 8 41 0 2 13 chain 14611 chr5 180915260 + 80514459 80514769 L1PB 1623 - 48 316 142547 22 61 37 14 5 1 13 3 0 4 1 0 30 2 1 7 1 0 92 9 1 46 chain 22982 chr5 180915260 + 80547142 80547434 AluSc 308 + 9 308 115707 39 1 10 73 2 0 177 chain 21710 chr5 180915260 + 80554375 80554727 MER1B 344 + 0 339 121350 30 1 0 214 3 0 14 59 50 31 chain 292177 chr5 180915260 + 80555549 80559130 L1PA7 6471 + 2810 6447 13886 79 10 16 96 2 0 85 10 14 384 10 2 63 15 28 437 1 0 335 0 12 31 1 2 187 0 3 80 0 3 7 0 2 120 0 2 63 1 0 73 0 4 191 1 2 210 1 0 132 0 5 19 6 9 108 0 3 83 0 2 4 1 0 64 2 1 34 0 3 182 0 3 327 3 4 123 chain 358543 chr5 180915260 + 80566494 80572013 L1PB1 5432 + 17 5422 11392 9 6 0 26 1 2 342 6 7 124 64 68 302 1 0 116 0 1 77 8 38 63 0 11 19 0 6 174 7 0 217 0 1 4 15 17 294 19 19 16 1 0 238 1 0 6 21 14 40 0 3 55 0 1 100 0 5 27 348 5 36 1 0 85 0 2 91 0 1 90 7 9 13 1 47 4 0 1 273 0 1 247 0 1 8 1 0 15 1 8 86 0 1 104 9 11 4 1 0 85 0 1 31 56 22 365 0 177 102 1 0 86 0 4 62 9 2 70 10 12 184 0 8 136 11 0 147 7 19 19 1 0 8 3 2 12 2 0 3 2 0 8 8 6 47 11 16 45 1 0 18 21 9 16 29 24 22 2 1 22 5 3 8 1 0 14 1 0 4 chain 501757 chr5 180915260 + 80572989 80578602 L1PA4 6152 + 2 6143 6739 94 0 525 818 1 0 569 0 3 740 1 0 201 4 5 214 1 0 1641 1 0 678 0 3 650 chain 21401 chr5 180915260 + 80584569 80584837 AluY 311 + 41 306 122503 76 3 1 15 1 0 173 chain 23356 chr5 180915260 + 80588308 80588996 L1PA16 3655 + 1595 1957 113897 64 6 7 129 1 0 54 341 14 51 4 5 38 chain 20976 chr5 180915260 + 80603208 80603481 AluSc5 308 + 10 292 124010 43 7 15 55 1 0 140 0 2 27 chain 6604 chr5 180915260 + 80616666 80616753 MLT1A0 366 - 46 131 180425 23 2 0 62 chain 84146 chr5 180915260 + 80647153 80648291 L1MA2 4263 + 2994 4114 41839 572 1 0 18 6 2 208 15 12 150 11 9 92 8 1 47 1 0 9 chain 533191 chr5 180915260 + 80668885 80675311 L1PA7 6471 + 0 6466 3821 72 2 0 94 15 15 20 4 3 586 0 33 135 1 0 387 1 0 4 0 1 384 6 7 760 0 2 17 0 2 109 3 1 21 0 1 98 0 1 737 0 1 12 1 0 31 7 8 715 5 4 26 0 1 386 0 4 269 4 5 662 0 3 221 0 3 614 6 0 11 chain 30296 chr5 180915260 + 80701961 80702279 AluYb8 318 + 0 318 83921 318 chain 15663 chr5 180915260 + 80703663 80703900 THE1D 372 - 69 325 139390 65 3 19 21 29 32 119 chain 75690 chr5 180915260 + 80728569 80729428 SVA_D 2077 + 1079 2076 45659 23 0 79 166 1 0 5 0 49 44 1 0 478 0 20 47 8 0 86 chain 3121 chr5 180915260 + 80743487 80743522 5S 121 - 79 114 222521 35 chain 26004 chr5 180915260 + 80749275 80749563 AluYf4 310 - 10 299 99999 96 0 1 192 chain 30558 chr5 180915260 + 80751156 80751474 AluYb8 318 + 0 318 83291 318 chain 16896 chr5 180915260 + 80757886 80758112 MER30 238 - 0 236 135855 113 11 21 102 chain 21465 chr5 180915260 + 80806310 80806593 AluSp 311 + 11 296 122271 46 14 16 59 1 0 117 0 1 46 chain 15910 chr5 180915260 + 80823502 80823718 L1PA8 5853 + 5638 5850 138628 40 2 1 9 1 0 52 2 1 19 1 0 90 chain 73704 chr5 180915260 + 80835577 80836444 L1PA7 6471 - 13 885 46670 148 0 2 691 4 7 24 chain 3438 chr5 180915260 + 80841123 80841180 MLT1J2 417 + 323 379 216444 11 6 5 40 chain 110196 chr5 180915260 + 80862423 80863957 THE1B-int 1605 + 3 1594 34160 38 3 4 21 3 22 103 14 13 88 5 6 134 0 35 373 0 2 168 22 23 98 33 47 226 0 2 48 19 2 138 chain 542505 chr5 180915260 + 80887673 80893840 L1PA4 6152 + 6 6152 2425 454 6 0 120 1 0 2677 0 2 763 19 5 99 1 19 1062 24 3 84 0 1 179 0 2 532 0 1 137 3 0 6 chain 563754 chr5 180915260 + 80911909 80917937 L1HS 6032 + 2 6031 244 3515 0 1 2513 chain 19168 chr5 180915260 + 80923908 80924248 THE1C 375 - 13 375 129623 12 1 0 96 1 0 9 0 22 25 17 12 5 0 2 10 36 40 15 3 4 110 chain 47953 chr5 180915260 + 80933549 80934081 L1PA3long 6157 + 5624 6156 60521 532 chain 7149 chr5 180915260 + 80948611 80948761 L1PB1 5432 - 28 158 176409 13 1 0 21 1 0 24 9 7 7 1 0 5 2 0 16 9 0 11 2 0 4 1 0 15 1 0 7 chain 75758 chr5 180915260 + 80948766 80949677 L1PA7 6471 - 3 919 45615 67 9 5 696 0 2 71 0 7 68 chain 191727 chr5 180915260 + 80954556 80956982 L1PA8 5853 + 3412 5844 19892 232 0 3 541 0 2 180 1 0 79 34 15 130 3 18 70 0 1 277 0 4 45 2 0 44 0 1 54 3 8 14 0 3 431 1 0 44 2 0 73 1 0 8 1 0 51 2 1 19 2 1 39 0 1 43 chain 21220 chr5 180915260 + 80965320 80965589 L1PA8A 6298 + 6029 6291 123145 161 8 1 100 chain 22934 chr5 180915260 + 80991172 80991434 L1PA5 6144 - 2 264 115937 262 chain 9324 chr5 180915260 + 80999289 80999388 L1PA3long 6157 + 6058 6157 163931 99 chain 25342 chr5 180915260 + 81008181 81008447 AluYb8 318 + 43 309 103007 266 chain 78436 chr5 180915260 + 81009737 81010669 L1PA7 6471 - 10 955 44300 410 0 1 108 0 1 79 0 3 46 0 2 111 0 2 74 0 4 104 chain 7854 chr5 180915260 + 81026773 81026876 L1MB2 1706 - 12 113 171966 81 1 0 15 1 0 5 chain 9953 chr5 180915260 + 81077869 81078020 Tigger3b 1229 - 459 611 160821 55 13 14 83 chain 48407 chr5 180915260 + 81118525 81119086 LTR12C 1709 - 1 1620 60175 393 0 1058 168 chain 100361 chr5 180915260 + 81119359 81120628 LTR12C 1709 + 0 1709 36669 508 7 14 44 11 13 157 0 278 74 0 47 89 0 4 212 0 1 22 43 13 39 0 131 63 chain 10699 chr5 180915260 + 81156046 81156175 MER85 139 + 0 139 157422 90 0 10 39 chain 30427 chr5 180915260 + 81182504 81182822 AluYb8 318 - 0 318 83609 318 chain 118509 chr5 180915260 + 81185934 81187527 THE1D-int 1627 + 0 1622 31617 37 1 0 193 11 0 123 14 25 25 14 28 63 0 1 5 1 0 41 1 0 149 2 1 18 4 5 9 1 2 133 6 8 173 0 14 569 chain 81751 chr5 180915260 + 81196341 81197399 MER11C 1089 + 1 1063 42869 250 1 2 64 0 4 21 1 0 44 1 0 145 42 41 19 6 4 95 0 4 5 1 0 40 0 1 323 chain 97303 chr5 180915260 + 81215446 81217601 L1PB2 3958 - 147 1647 37483 19 6 7 10 9 8 12 2 0 14 0 1 58 6 5 19 1 0 18 7 0 22 1 0 29 0 1 43 1 0 44 25 28 22 4 0 12 2 0 28 19 20 15 5 0 15 1 0 54 3 1 59 17 24 43 0 1 33 8 9 79 0 1 132 4 3 19 6 4 112 639 0 293 10 9 103 6 5 66 chain 56678 chr5 180915260 + 81228870 81229538 L1PA5 6144 - 14 695 54734 215 0 4 33 6 7 185 0 8 229 chain 74094 chr5 180915260 + 81229549 81230400 L1P1 4361 + 3475 4325 46464 296 0 1 378 1 0 155 2 1 19 chain 4699 chr5 180915260 + 81240131 81240182 MER47A 366 + 240 291 198550 51 chain 24076 chr5 180915260 + 81249122 81249467 LTR7 482 + 0 469 109892 69 6 95 60 8 40 25 10 11 86 0 2 81 chain 308590 chr5 180915260 + 81249482 81253386 HERVH-int 3825 + 0 3825 13062 184 0 4 145 1 0 6 0 27 169 1 0 4 1 0 6 0 1 24 1 0 10 1 0 7 0 1 2 5 0 7 13 7 15 0 37 30 2 0 11 1 0 14 110 1 40 1 0 4 0 1 6 0 2 13 0 3 415 0 13 222 9 0 44 1 0 210 4 31 284 0 4 270 12 13 685 27 0 43 1 0 576 7 9 87 35 0 138 chain 24114 chr5 180915260 + 81254643 81255049 LTR7 482 + 0 477 109672 68 7 96 21 51 0 39 8 40 21 10 11 181 chain 3899 chr5 180915260 + 81260865 81260908 L1MC2 1988 + 1864 1907 208859 43 chain 37001 chr5 180915260 + 81265592 81266116 MER39B 650 + 11 555 73509 124 6 23 57 14 15 199 0 1 43 18 19 63 chain 8847 chr5 180915260 + 81272546 81272666 MER85 139 + 5 139 166392 55 0 3 33 3 14 29 chain 3938 chr5 180915260 + 81272980 81273030 MER57E1 380 + 330 380 208303 50 chain 158166 chr5 180915260 + 81278396 81280262 SVA_D 2077 - 13 2067 23567 325 0 10 328 12 0 5 0 8 4 0 127 219 0 1 51 1 0 38 49 8 24 3 0 10 2 0 344 0 76 410 0 25 41 chain 3568 chr5 180915260 + 81279379 81279428 SVA_D 2077 - 902 951 125940 49 chain 104551 chr5 180915260 + 81296775 81298322 L1PA15 4387 + 2846 4356 35609 82 1 0 197 19 0 11 0 1 32 1 0 26 0 1 250 0 1 43 0 4 19 0 1 28 4 10 133 0 2 125 2 0 19 2 0 53 3 0 3 2 0 46 1 0 173 2 0 4 0 1 19 1 0 23 22 15 17 1 0 12 7 5 14 2 1 17 15 18 15 6 3 43 5 2 12 8 2 27 chain 4951 chr5 180915260 + 81302935 81302994 L1MB2 1706 - 217 276 195691 59 chain 182020 chr5 180915260 + 81309747 81311822 L1P1 4361 - 1317 3398 20781 847 0 2 291 0 1 826 0 3 111 chain 20236 chr5 180915260 + 81317142 81317399 MER2 342 - 1 257 126423 20 1 0 236 chain 2907 chr5 180915260 + 81326107 81326139 MER3 215 + 58 90 226907 32 chain 29794 chr5 180915260 + 81333055 81333365 AluYa5 310 - 0 310 85466 310 chain 57996 chr5 180915260 + 81343641 81344271 L1PA3long 6157 - 1104 1734 53329 630 chain 98321 chr5 180915260 + 81344271 81345378 L1PA3long 6157 + 5053 6156 37215 8 3 0 321 1 2 617 1 0 14 1 0 141 chain 33269 chr5 180915260 + 81363944 81364371 L1PA7 6471 + 6036 6457 78771 100 0 1 171 15 15 101 8 1 32 chain 13073 chr5 180915260 + 81374997 81375186 THE1B 368 - 0 192 147943 46 8 16 68 0 1 45 6 0 16 chain 231243 chr5 180915260 + 81375200 81377812 L1PA5 6144 - 13 2636 17245 133 3 4 693 0 4 646 0 1 299 0 4 415 0 1 423 chain 204255 chr5 180915260 + 81378699 81381268 L1P2 5180 + 2 2610 18909 139 0 11 95 18 17 244 1 0 7 1 0 272 7 5 36 0 7 81 6 31 461 28 37 12 13 4 554 0 1 594 chain 14092 chr5 180915260 + 81381298 81381467 L1PA5 6144 + 5974 6143 144247 169 chain 3740 chr5 180915260 + 81384694 81384789 L1MD1 2063 + 927 1023 211325 21 38 39 36 chain 3230 chr5 180915260 + 81393426 81393464 MADE1 96 - 50 88 220419 38 chain 24300 chr5 180915260 + 81394127 81394417 AluSg7 307 - 6 296 108661 174 0 1 78 1 0 37 chain 91172 chr5 180915260 + 81405629 81406646 L1PA5 6144 - 6 1026 39240 12 1 0 123 0 4 881 chain 58878 chr5 180915260 + 81417130 81418046 L1PREC2 3366 - 984 1873 53471 297 17 0 9 9 24 92 0 1 155 32 6 5 0 3 26 8 4 55 1 0 10 1 4 12 5 4 58 23 22 43 1 2 57 chain 4442 chr5 180915260 + 81418055 81418144 L1PREC2 3366 + 2922 2994 201430 30 3 0 11 22 8 23 chain 511330 chr5 180915260 + 81420120 81426623 L1PA7 6471 - 1 6471 6037 197 7 8 137 0 8 239 6 7 250 0 3 282 0 13 225 6 0 6 10 16 94 1 0 160 2 0 505 4 1 5 0 1 39 1 0 639 0 3 5 10 7 123 1 0 276 1 0 94 1 0 27 10 14 353 1 0 94 5 0 163 2 3 380 70 0 316 0 12 6 0 1 132 0 1 18 5 6 103 0 3 213 2 0 5 6 8 38 0 1 66 0 1 222 13 12 96 0 2 579 15 0 12 0 15 225 chain 3415 chr5 180915260 + 81424493 81424531 L1PA7 6471 + 2055 2093 216852 38 chain 508808 chr5 180915260 + 81428070 81434497 L1PA7 6471 - 1 6468 6258 65 4 0 90 1 0 310 0 2 5 2 0 8 5 20 349 1 4 283 0 13 80 0 1 139 6 0 6 10 16 94 1 0 95 0 4 566 4 1 5 0 1 44 1 0 933 1 0 112 1 0 70 0 4 50 0 4 363 1 0 10 0 1 21 1 2 60 5 0 154 1 0 421 0 13 59 0 2 166 1 2 68 0 1 506 2 0 13 7 8 121 6 7 194 6 4 106 11 3 539 15 0 12 0 15 49 30 35 138 chain 158179 chr5 180915260 + 81434704 81437062 SVA_F 1814 + 15 1814 23564 707 0 2 5 2 0 46 91 0 13 37 0 27 1 0 18 26 17 5 1 0 28 0 1 63 78 15 44 179 0 181 179 0 627 chain 2860 chr5 180915260 + 81435470 81435515 SVA_F 1814 + 821 866 77517 45 chain 2691 chr5 180915260 + 81435568 81435605 SVA_F 1814 + 982 1068 109907 6 2 51 29 chain 1652 chr5 180915260 + 81435651 81435677 SVA_F 1814 + 873 899 77517 7 0 1 11 1 0 7 chain 4957 chr5 180915260 + 81435774 81435852 SVA_F 1814 + 1011 1089 77517 78 chain 6991 chr5 180915260 + 81435896 81436006 SVA_F 1814 + 1133 1291 77517 6 0 49 86 1 0 17 chain 15748 chr5 180915260 + 81436257 81436434 SVA_F 1814 + 1011 1187 126538 94 0 1 49 0 1 20 3 0 11 chain 31812 chr5 180915260 + 81563092 81563561 LTR2B 499 - 0 490 81145 235 0 5 93 34 22 9 0 31 41 11 9 40 1 0 5 chain 54720 chr5 180915260 + 81567092 81567832 Harlequin-int 5206 - 4319 5081 55886 125 0 5 66 0 3 78 4 9 174 2 1 56 3 1 6 0 5 35 0 1 16 0 1 14 0 3 58 7 12 71 3 0 22 chain 32198 chr5 180915260 + 81569102 81569562 LTR2B 499 - 0 499 80524 35 0 6 183 0 12 27 5 7 31 1 0 4 11 12 49 3 22 46 1 0 50 0 1 14 chain 33594 chr5 180915260 + 81595927 81596301 L1PA3long 6157 + 5775 6157 78251 328 0 4 30 0 4 16 chain 6442 chr5 180915260 + 81600009 81600080 L1PA16 3655 - 97 168 181694 71 chain 3052 chr5 180915260 + 81614947 81615050 MamRep1879 211 - 99 204 223978 30 57 59 16 chain 33342 chr5 180915260 + 81624454 81624934 MER9a3 513 + 0 513 78670 13 1 2 4 0 1 90 0 1 68 10 11 62 6 23 18 2 12 116 0 1 7 4 5 79 chain 257884 chr5 180915260 + 81665067 81667821 L1HS 6032 - 0 2754 15813 2754 chain 4789 chr5 180915260 + 81703111 81703171 MIR 256 + 143 203 197473 60 chain 38674 chr5 180915260 + 81713427 81713889 LTR2 463 - 0 462 71187 159 7 6 33 0 1 263 chain 39099 chr5 180915260 + 81716464 81716924 LTR2 463 + 0 463 70602 65 1 0 31 0 4 363 chain 24793 chr5 180915260 + 81721052 81721337 AluSp 311 + 10 295 105928 285 chain 11846 chr5 180915260 + 81721396 81721539 MSTA 426 - 283 426 152843 143 chain 555034 chr5 180915260 + 81725219 81731239 L1PA2 6032 - 0 6029 823 4790 0 9 659 0 1 262 1 0 308 chain 493936 chr5 180915260 + 81747063 81753470 L1PA6 6164 - 4 6151 7175 6 2 0 142 1 2 33 1 2 281 3 2 2502 0 1 336 315 0 310 3 5 131 0 12 58 11 14 287 1 2 846 4 13 211 0 25 195 20 21 213 11 10 86 83 99 115 0 1 80 39 25 81 chain 10298 chr5 180915260 + 81759933 81760084 THE1B 368 + 0 151 159142 19 2 0 89 7 9 34 chain 9484 chr5 180915260 + 81766557 81766763 L1PA16 3655 + 3444 3619 163146 60 24 17 44 0 1 11 3 0 10 38 16 16 chain 3607 chr5 180915260 + 81771509 81771550 L1PA2 6032 - 6 47 213521 41 chain 12461 chr5 180915260 + 81780067 81780207 AluYc 301 + 161 301 150412 140 chain 3462 chr5 180915260 + 81781891 81782001 MIR 256 + 33 145 215943 20 56 58 34 chain 56361 chr5 180915260 + 81784839 81785492 L1PA7 6471 - 1 655 54928 154 0 1 184 1 0 173 0 1 141 chain 364451 chr5 180915260 + 81798417 81802415 L1PA3long 6157 - 0 4011 11243 530 0 10 1323 0 2 347 0 1 1798 chain 3256 chr5 180915260 + 81814361 81814400 MER63A 208 + 62 101 219876 39 chain 25089 chr5 180915260 + 81823991 81824355 THE1C 375 - 0 375 104356 25 1 0 66 1 10 79 24 23 33 0 4 135 chain 104097 chr5 180915260 + 81827196 81828558 THE1B-int 1605 - 1 1537 35715 147 2 14 95 19 20 251 3 4 434 9 148 34 0 25 244 4 0 120 chain 212275 chr5 180915260 + 81876472 81879120 L1PA10 4194 - 33 2676 18341 11 1 0 34 3 0 40 1 0 118 0 1 265 2 3 211 0 3 146 0 1 103 0 1 87 5 6 48 0 1 124 9 0 129 1 0 4 0 1 625 1 0 45 0 1 635 chain 41002 chr5 180915260 + 81879120 81879612 MER9a3 513 + 0 513 67899 18 0 2 90 0 1 147 0 17 159 0 1 78 chain 38676 chr5 180915260 + 81896928 81897400 MER9B 498 + 6 498 71185 151 1 0 108 0 21 212 chain 24255 chr5 180915260 + 81906026 81906386 HERVL-int 5654 + 1202 5654 108915 120 12 4104 228 chain 16563 chr5 180915260 + 81906550 81906751 LTR3A 482 + 26 228 136760 83 0 1 118 chain 114188 chr5 180915260 + 81912760 81914145 L1PA6 6164 + 4765 6156 33033 124 0 1 616 1 3 489 67 70 88 chain 23080 chr5 180915260 + 81921397 81923697 THE1B 368 + 0 368 115243 117 12 14 38 6 5 19 2 0 30 1 4 70 1934 0 71 chain 3389 chr5 180915260 + 81921706 81921743 THE1B 368 + 319 356 217305 37 chain 11588 chr5 180915260 + 81923335 81923511 THE1B 368 + 0 177 153940 109 25 26 42 chain 20828 chr5 180915260 + 81924848 81925208 THE1B 368 + 2 368 124512 12 2 0 91 16 18 52 41 39 18 9 17 119 chain 29450 chr5 180915260 + 81926103 81926412 AluYa5 310 - 1 310 86837 309 chain 17829 chr5 180915260 + 81928827 81929038 L1PA5 6144 - 365 577 133303 99 0 1 112 chain 12917 chr5 180915260 + 81973675 81973835 L1PA5 6144 + 5986 6140 148567 143 6 0 11 chain 20134 chr5 180915260 + 81983903 81984141 L1PA7 6471 + 6229 6465 126730 230 2 0 6 chain 29499 chr5 180915260 + 81987108 81987422 AluYb9 318 + 0 315 86641 165 0 1 149 chain 31302 chr5 180915260 + 82005453 82005789 L1PA2 6032 + 5692 6028 81988 336 chain 126416 chr5 180915260 + 82010317 82011854 LTR12C 1709 + 0 1709 28965 289 9 0 414 41 0 87 5 86 236 1 0 5 3 1 12 0 9 85 0 4 248 0 131 102 chain 2983 chr5 180915260 + 82011029 82011070 LTR12C 1709 + 981 1022 118763 41 chain 26443 chr5 180915260 + 82022379 82022682 AluYf4 310 + 0 303 98261 157 2 1 94 0 1 50 chain 72833 chr5 180915260 + 82046181 82047114 L1PA8 5853 - 0 924 47111 93 1 0 29 0 1 44 1 0 7 2 1 66 9 7 41 4 0 404 0 1 140 13 11 79 chain 44578 chr5 180915260 + 82057997 82058560 MLT2A2 560 + 1 560 63501 63 6 0 38 0 1 100 0 1 356 chain 23876 chr5 180915260 + 82118864 82119156 LTR12C 1709 - 264 546 111053 5 3 0 212 11 4 61 chain 3381 chr5 180915260 + 82128263 82128304 MER67D 511 + 444 485 217459 41 chain 41303 chr5 180915260 + 82133618 82134131 MER41C 542 + 0 535 67529 49 0 1 261 0 21 203 chain 502709 chr5 180915260 + 82137556 82143987 L1PA6 6164 - 4 6158 6685 184 5 6 112 1 2 208 3 0 333 3 0 5 6 8 582 1 23 443 352 0 353 2 1 94 6 7 422 0 8 91 0 5 41 0 1 41 0 1 862 0 2 795 0 1 30 2 3 168 3 4 72 4 14 189 5 0 139 0 4 82 0 17 57 0 1 231 0 2 51 1 0 7 0 4 38 15 16 159 0 1 111 0 1 122 chain 534546 chr5 180915260 + 82162700 82168598 L1PA3long 6157 - 0 6153 3644 55 0 4 90 0 2 114 1 0 1947 0 1 3034 0 144 212 0 1 262 0 103 35 0 1 148 chain 36179 chr5 180915260 + 82195451 82195916 L1PA7 6471 + 6003 6467 74664 4 1 0 130 2 0 129 0 1 39 0 1 160 chain 539438 chr5 180915260 + 82228268 82234275 L1PA3long 6157 + 4 6156 2908 147 1 2 47 0 1 357 1 0 22 0 4 57 0 1 134 0 128 613 1 3 1793 0 1 632 0 1 1599 0 3 553 0 4 50 chain 483634 chr5 180915260 + 82239890 82246606 L1PA5 6144 + 7 6144 7603 113 6 20 1263 9 14 251 0 2 184 0 1 456 7 9 108 0 4 505 0 1 340 0 4 225 0 2 835 0 4 131 0 1 374 2 1 439 1 0 100 981 367 50 1 0 190 1 0 98 1 0 45 chain 4107 chr5 180915260 + 82245253 82245297 L1P2 5180 + 2 46 205809 44 chain 70207 chr5 180915260 + 82245298 82246075 L1PA4 6152 + 5336 6151 48306 9 0 36 97 0 2 671 chain 33531 chr5 180915260 + 82265037 82265433 LTR10F 562 - 108 562 78347 190 0 16 18 0 42 188 chain 63086 chr5 180915260 + 82266431 82267192 LTR17 781 - 9 781 51408 371 10 9 64 0 1 46 0 2 151 0 9 119 chain 53938 chr5 180915260 + 82268505 82269460 HERVIP10FH-int 2884 - 2072 2735 56409 94 0 1 37 0 2 186 0 3 89 309 1 163 0 12 16 2 0 59 chain 32547 chr5 180915260 + 82271552 82272101 LTR10F 562 - 149 561 79949 149 129 16 15 28 4 228 chain 22919 chr5 180915260 + 82289663 82289942 AluY 311 + 12 297 116014 120 0 1 80 1 0 54 0 6 24 chain 27194 chr5 180915260 + 82320495 82320806 L1PA7 6471 + 6158 6469 95612 311 chain 21232 chr5 180915260 + 82335253 82335538 AluSp 311 - 16 301 123091 97 0 1 42 24 23 122 chain 23100 chr5 180915260 + 82370593 82370868 AluSp 311 - 16 291 115143 275 chain 12390 chr5 180915260 + 82378493 82378661 MER30 238 + 46 238 150667 67 12 36 89 chain 3331 chr5 180915260 + 82385639 82385681 MER21C 908 - 266 308 218389 42 chain 55452 chr5 180915260 + 82408758 82409430 THE1B-int 1605 - 11 680 55435 295 3 0 374 chain 3529 chr5 180915260 + 82411279 82411316 THE1B 368 - 331 368 214897 37 chain 502282 chr5 180915260 + 82423809 82431170 L1PA5 6144 - 6 6143 6711 36 0 9 799 1 0 830 0 1 113 0 8 667 1 0 505 0 1 19 1 0 268 0 1 41 0 1 44 3 94 63 1 0 322 5 3 1036 0 3 5 10 7 92 9 0 87 0 3 10 4 1 131 0 2 5 10 9 491 19 19 154 1336 0 123 2 16 118 chain 13932 chr5 180915260 + 82430102 82430663 LTR12D 1347 + 587 1095 144814 91 135 33 65 230 280 26 1 0 13 chain 3866 chr5 180915260 + 82448886 82448993 L1MD2 1676 - 176 279 209360 22 51 47 34 chain 28627 chr5 180915260 + 82482760 82483061 AluYh9 303 - 2 303 90627 301 chain 4704 chr5 180915260 + 82515479 82515537 MER33 330 + 51 109 198475 58 chain 33368 chr5 180915260 + 82519502 82519886 L1PA5 6144 - 0 445 78623 197 0 62 173 1 0 13 chain 21443 chr5 180915260 + 82537519 82537900 Tigger2 2703 - 84 431 122361 22 12 13 31 0 2 21 6 1 112 14 17 15 9 0 19 27 0 23 0 1 70 chain 76213 chr5 180915260 + 82553105 82554015 L1PA7 6471 + 5557 6468 45356 46 1 0 21 1 4 509 1 0 331 chain 104906 chr5 180915260 + 82558664 82559807 L1PA2 6032 - 0 1145 35525 15 0 3 127 1 0 1000 chain 35810 chr5 180915260 + 82565615 82566130 MER1A 529 - 0 529 75117 71 3 0 143 10 8 210 5 6 23 35 53 15 chain 119158 chr5 180915260 + 82568239 82569728 L1PA8 5853 - 0 1489 31354 53 4 0 40 1 0 10 12 11 50 1 0 9 6 5 67 2 0 22 0 2 21 1 0 384 0 2 168 0 2 224 0 6 69 1 0 344 chain 28261 chr5 180915260 + 82571115 82571413 AluYa5 310 - 13 310 92078 171 1 0 126 chain 117888 chr5 180915260 + 82596402 82597807 L1PA7 6471 - 1 1413 31835 64 0 1 132 0 1 110 1 0 220 0 1 215 0 1 23 0 1 84 0 3 322 5 4 97 0 1 132 chain 5835 chr5 180915260 + 82609328 82609410 Tigger1 2417 + 1229 1310 186819 70 1 0 11 chain 376379 chr5 180915260 + 82612106 82616189 L1PA2 6032 + 1949 6032 10868 4083 chain 29408 chr5 180915260 + 82621641 82622220 L1PA11 4918 - 289 883 87030 18 120 94 9 4 0 13 0 3 4 1 0 14 2 0 16 18 69 61 1 0 5 4 0 267 1 0 21 chain 3061 chr5 180915260 + 82622241 82622276 L1PREC2 3366 - 1307 1342 223807 35 chain 29837 chr5 180915260 + 82623800 82624151 THE1A 353 - 2 353 85326 91 0 1 149 1 0 110 chain 21475 chr5 180915260 + 82635178 82635456 L1PA7 6471 + 6195 6470 122234 113 7 1 12 0 3 146 chain 17583 chr5 180915260 + 82646780 82647139 MSTA 426 + 2 426 134043 91 27 51 36 0 3 11 85 123 109 chain 11934 chr5 180915260 + 82682302 82682436 L1PA4 6152 + 6004 6138 152461 134 chain 142080 chr5 180915260 + 82694216 82695776 L1PA4 6152 + 4582 6143 25808 1271 0 1 289 chain 269726 chr5 180915260 + 82704899 82708306 L1PA10 4194 + 747 4161 15196 779 0 3 191 0 1 92 12 8 47 5 0 144 0 4 114 12 10 82 0 4 450 0 4 61 0 1 33 0 4 176 3 1 4 1 0 394 15 17 161 0 1 110 2 5 135 4 1 93 0 1 239 3 0 33 1 0 11 chain 13675 chr5 180915260 + 82712577 82712738 THE1D 372 + 211 372 145692 161 chain 58363 chr5 180915260 + 82733637 82734294 SVA_A 1864 + 1203 1857 53770 42 2 0 35 3 0 76 0 2 499 chain 553153 chr5 180915260 + 82753618 82759636 L1PA2 6032 - 0 6026 1049 782 1 0 1235 0 1 1254 0 1 1022 2 0 598 0 4 207 0 5 917 chain 28199 chr5 180915260 + 82800599 82800951 THE1A 353 - 0 351 92312 243 3 2 106 chain 126478 chr5 180915260 + 82800958 82802528 THE1A-int 1579 - 5 1579 28951 158 1 0 89 1 0 588 9 0 7 0 9 482 5 8 48 0 3 182 chain 27827 chr5 180915260 + 82802528 82802883 THE1A 353 - 0 353 93595 178 1 0 65 1 0 110 chain 24737 chr5 180915260 + 82821764 82822056 AluSg4 309 - 17 309 106238 292 chain 3322 chr5 180915260 + 82869285 82869324 Ricksha_b 1102 + 11 50 218545 39 chain 32228 chr5 180915260 + 82872948 82873436 LTR44 473 + 0 473 80471 21 0 1 17 5 4 72 21 0 37 1 0 7 0 2 122 2 3 33 10 13 48 0 1 92 chain 11363 chr5 180915260 + 82898965 82899132 MER30 238 - 2 184 154842 38 3 0 72 15 33 39 chain 4470 chr5 180915260 + 82899606 82899658 MLT2B4 540 + 1 53 201122 52 chain 29490 chr5 180915260 + 82906071 82906379 AluYa5 310 - 2 310 86668 308 chain 30272 chr5 180915260 + 82928049 82928401 L1PA7 6471 - 9 362 84012 334 0 1 18 chain 5505 chr5 180915260 + 82994073 82994140 L1M1 2793 - 1177 1245 189986 63 0 1 4 chain 5820 chr5 180915260 + 82999280 82999362 U6 107 + 14 107 186942 22 1 12 59 chain 136220 chr5 180915260 + 83001236 83003420 L1PREC2 3366 + 910 3048 26794 76 0 2 34 0 3 5 9 6 99 3 4 100 10 9 7 0 1 53 20 19 83 11 5 123 2 1 49 1 0 5 12 0 28 0 1 4 33 47 73 6 8 11 9 6 82 4 5 496 0 4 233 9 5 28 3 1 126 2 0 40 17 16 41 8 4 11 60 47 10 3 0 4 0 1 26 3 0 7 26 12 29 8 7 4 1 0 37 chain 13639 chr5 180915260 + 83022671 83022854 L1PA8A 6298 - 12 188 145821 98 7 1 71 1 0 6 chain 85380 chr5 180915260 + 83023153 83024196 L1PA7 6471 + 5421 6470 41386 199 0 7 26 0 1 482 0 1 324 3 0 9 chain 53237 chr5 180915260 + 83028455 83029112 L1PA8A 6298 - 7 657 56867 107 0 1 275 10 2 265 chain 12466 chr5 180915260 + 83030047 83030231 L1P3b 214 - 39 214 150390 13 4 0 130 12 7 25 chain 57101 chr5 180915260 + 83032952 83033597 L1PA5 6144 - 14 660 54469 344 0 1 301 chain 505378 chr5 180915260 + 83049095 83055448 L1PA7 6471 + 5 6469 6504 398 0 1 48 13 121 793 1 0 105 8 21 188 0 1 466 0 1 493 22 1 689 29 30 157 12 12 18 0 1 6 0 1 40 2 1 8 1 2 15 0 1 118 0 1 94 21 14 80 0 1 69 7 10 11 0 1 129 0 6 365 0 1 51 1 0 4 0 1 119 1 0 916 1 0 95 0 1 588 1 0 5 4 5 161 chain 547828 chr5 180915260 + 83089430 83095461 L1PA2 6032 - 2 6032 1725 2678 8 9 774 1 0 2313 1 0 256 chain 13549 chr5 180915260 + 83123737 83123886 L1PA2 6032 + 5883 6032 146173 149 chain 26803 chr5 180915260 + 83144624 83144990 THE1C 375 + 9 375 96972 204 20 21 116 1 0 25 chain 53735 chr5 180915260 + 83146132 83146754 L1PA6 6164 + 5538 6160 56513 622 chain 223777 chr5 180915260 + 83197881 83200342 L1PA3long 6157 - 0 2464 17667 148 1 0 695 0 4 1617 chain 16083 chr5 180915260 + 83215832 83216141 MLT2D 439 + 0 316 138104 8 1 0 4 1 0 112 3 6 15 80 86 85 chain 25582 chr5 180915260 + 83228169 83228640 L1PA13 3608 + 229 1166 101817 30 39 37 90 38 37 4 1 0 18 2 0 13 17 491 98 2 0 119 chain 7495 chr5 180915260 + 83265780 83265973 L1MA5A 2387 - 86 248 174182 5 1 0 64 35 8 9 3 0 34 1 0 6 6 8 10 7 6 12 chain 70328 chr5 180915260 + 83314587 83315373 L1PA4 6152 + 5364 6152 48252 612 3 5 171 chain 17439 chr5 180915260 + 83321210 83321457 MER1A 529 + 271 522 134408 172 24 28 51 chain 11377 chr5 180915260 + 83324642 83324778 THE1B 368 + 0 151 154791 40 0 15 96 chain 5117 chr5 180915260 + 83335588 83335645 L1PA3long 6157 + 6100 6157 193900 57 chain 22612 chr5 180915260 + 83339723 83340036 L1PA8 5853 - 0 307 117521 93 1 0 19 2 1 45 0 1 5 1 0 10 2 1 69 2 0 47 1 0 16 chain 28310 chr5 180915260 + 83345736 83346041 AluYg6 310 + 0 305 91904 305 chain 540921 chr5 180915260 + 83346156 83352298 L1PA5 6144 + 3 6140 2676 973 0 4 1145 0 1 364 0 1 788 0 1 1391 4 5 294 0 1 414 1 0 393 12 0 78 0 1 267 2 0 16 chain 207906 chr5 180915260 + 83368891 83371178 L1PA3long 6157 + 3870 6157 18644 2287 chain 110323 chr5 180915260 + 83391058 83392547 THE1B-int 1605 + 0 1585 34116 25 3 0 5 12 15 385 1 26 63 1 0 192 2 1 26 53 126 721 chain 25833 chr5 180915260 + 83392582 83392933 THE1B 368 + 13 368 100735 27 0 5 22 0 1 79 4 6 19 2 1 27 4 0 22 0 1 145 chain 5915 chr5 180915260 + 83394771 83394835 L1PA7 6471 - 1757 1821 184402 64 chain 139593 chr5 180915260 + 83394835 83396550 L1PA7 6471 + 4726 6468 26203 253 0 1 107 0 22 231 1 0 88 1 0 195 0 5 20 1 0 55 2 0 53 0 2 334 0 2 213 11 13 142 2 0 6 chain 3693 chr5 180915260 + 83468553 83468592 LTR32 486 + 13 52 212029 39 chain 7208 chr5 180915260 + 83496008 83496091 L1PA5 6144 + 6056 6139 176010 83 chain 87045 chr5 180915260 + 83501339 83502286 L1PA3long 6157 - 2610 3557 40755 947 chain 234390 chr5 180915260 + 83502286 83505203 L1PA3long 6157 + 3566 6157 17072 429 0 1 1489 327 0 672 chain 29861 chr5 180915260 + 83504215 83504531 AluYb8 318 + 0 316 85237 316 chain 37764 chr5 180915260 + 83588577 83589036 LTR71A 459 - 0 459 72473 34 0 1 188 1 0 236 chain 56455 chr5 180915260 + 83605162 83605807 L1PA3long 6157 - 0 646 54877 141 1 0 316 0 2 187 chain 93577 chr5 180915260 + 83607376 83608533 SVA_D 2077 - 0 1621 38486 8 2 0 614 0 1 47 15 14 4 0 1 31 0 1 47 19 47 4 0 1 186 1 0 33 5 7 78 0 82 18 10 362 35 chain 6296 chr5 180915260 + 83611422 83611498 U3 216 + 0 76 182830 76 chain 336116 chr5 180915260 + 83611498 83615978 L1PA7 6471 + 1875 6469 11994 757 0 2 1012 0 17 186 21 453 366 0 4 106 8 10 139 4 5 273 2 1 5 0 1 359 0 1 44 1 4 211 348 0 140 0 1 32 1 0 465 chain 27466 chr5 180915260 + 83615008 83615308 AluYd8 298 + 0 296 94756 114 4 0 182 chain 31559 chr5 180915260 + 83626738 83627132 THE1C-int 1605 + 1205 1599 81547 130 1 2 258 1 0 4 chain 41728 chr5 180915260 + 83650732 83651299 L1P2 5180 - 3457 4028 66991 266 10 11 256 5 8 30 chain 19699 chr5 180915260 + 83692899 83693155 AluY 311 + 36 293 128103 96 6 7 154 chain 26602 chr5 180915260 + 83710778 83711302 L1MA3 4352 - 49 546 97648 15 1 0 5 2 1 24 2 0 72 0 8 10 16 17 32 120 87 132 0 1 93 chain 70756 chr5 180915260 + 83714428 83715257 L1PA5 6144 - 3 852 48037 6 4 0 65 3 28 40 7 0 11 0 7 549 1 0 143 chain 107033 chr5 180915260 + 83724189 83725430 L1PA6 6164 - 2 1248 34962 400 0 1 100 0 1 262 2 5 477 chain 67941 chr5 180915260 + 83731204 83732252 MER11A 1151 + 0 1145 49264 79 0 8 103 21 17 21 1 0 66 0 11 30 0 9 40 1 0 148 9 21 129 6 9 11 3 4 31 6 10 63 0 7 8 11 64 4 1 0 42 29 28 23 12 11 90 1 0 25 1 0 33 chain 2970 chr5 180915260 + 83735468 83735502 Tigger1 2417 - 83 117 225684 34 chain 6258 chr5 180915260 + 83751462 83751645 HSMAR2 1300 - 1162 1289 183107 58 90 33 19 0 1 16 chain 16834 chr5 180915260 + 83753598 83753818 L1PA6 6164 + 5947 6162 136029 47 6 0 10 1 2 156 chain 101837 chr5 180915260 + 83767175 83768277 L1PA2 6032 - 4 1110 36303 841 0 4 261 chain 3526 chr5 180915260 + 83784481 83784534 MER63B 433 - 140 196 214952 37 4 7 12 chain 25144 chr5 180915260 + 83795088 83795378 L1PA4 6152 + 5862 6152 104038 290 chain 23094 chr5 180915260 + 83813130 83813587 L1PA13 3608 - 3038 3469 115171 35 2 1 17 3 1 18 2 0 17 1 0 5 19 15 16 2 0 17 1 0 15 1 0 122 2 0 70 31 20 13 9 11 12 2 1 25 chain 4619 chr5 180915260 + 83826465 83826585 L1MA1 4479 + 4097 4200 199410 8 2 0 37 1 0 9 1 0 4 11 8 10 7 0 17 3 0 10 chain 51530 chr5 180915260 + 83835353 83835944 LTR10C 591 + 0 591 57944 591 chain 46536 chr5 180915260 + 83849539 83850119 L1PA8A 6298 + 5217 5797 61564 272 12 12 296 chain 31817 chr5 180915260 + 83912671 83913033 L1PA3long 6157 + 5793 6157 81133 90 0 5 264 3 0 5 chain 24061 chr5 180915260 + 83962481 83962779 AluSp 311 + 5 301 109975 127 2 0 169 chain 43952 chr5 180915260 + 83973373 83973867 L1PA4 6152 + 5646 6143 64261 207 0 1 53 0 2 234 chain 102142 chr5 180915260 + 83989914 83991164 L1PA5 6144 - 3 1261 36224 53 0 1 97 18 19 158 3 4 125 4 5 381 1 5 410 chain 296816 chr5 180915260 + 83994492 83998327 HERVH-int 3825 + 4 3816 13601 208 4 15 305 276 0 38 1 0 10 1 0 24 29 0 15 0 37 42 2 1 56 0 1 7 0 2 13 0 3 101 0 3 344 15 0 225 0 2 229 4 31 290 0 4 1110 8 218 36 0 1 5 1 0 436 chain 5655 chr5 180915260 + 83995060 83995151 HERVH-int 3825 + 461 531 188525 55 21 0 15 chain 4398 chr5 180915260 + 83995181 83995229 HERVH-int 3825 + 436 484 201965 48 chain 1014 chr5 180915260 + 83995245 83995285 HERVH-int 3825 + 436 476 184121 40 chain 38113 chr5 180915260 + 83999572 84000000 LTR7 482 + 0 460 71964 264 0 31 150 0 1 14 chain 26208 chr5 180915260 + 84033943 84034240 L1PA3long 6157 + 5859 6157 99170 155 0 1 142 chain 4400 chr5 180915260 + 84053748 84053810 MLT1D 503 + 364 444 201929 21 0 19 22 1 0 18 chain 16871 chr5 180915260 + 84054104 84054460 THE1D 372 + 0 372 135913 51 23 27 45 100 111 4 0 1 133 chain 11581 chr5 180915260 + 84059488 84059824 L1M1 2793 - 1825 2132 153971 54 27 24 51 11 8 19 19 18 16 25 20 14 2 0 4 2 0 11 43 30 38 chain 115757 chr5 180915260 + 84103382 84104663 L1PA4 6152 - 9 1290 32542 331 1 0 885 0 1 64 chain 116146 chr5 180915260 + 84107905 84109430 THE1B-int 1605 + 0 1600 32399 273 0 6 81 2 3 15 17 81 16 0 11 439 2 0 29 13 8 638 chain 19726 chr5 180915260 + 84118653 84118884 L1PA7 6471 + 6207 6438 128025 231 chain 4370 chr5 180915260 + 84125663 84125930 LTR12C 1709 - 991 1059 202323 42 204 5 21 chain 49913 chr5 180915260 + 84129854 84130439 LTR10C 591 + 0 586 59081 318 0 1 267 chain 42861 chr5 180915260 + 84131906 84132392 L1PA5 6144 + 5658 6144 65582 486 chain 279851 chr5 180915260 + 84142070 84145713 HERVL-int 5654 + 1641 5654 14648 40 0 1 353 0 1 62 0 1 117 35 381 204 6 4 5 0 2 67 0 9 77 5 6 158 0 1 1011 2 1 225 0 4 138 8 7 100 0 2 56 23 23 589 0 1 147 5 10 210 chain 8057 chr5 180915260 + 84206539 84206649 L1PB 1623 + 1346 1453 170710 5 2 0 95 1 0 7 chain 17813 chr5 180915260 + 84217976 84218319 THE1B 368 + 17 368 133361 152 8 7 22 0 3 13 37 39 54 43 47 14 chain 143564 chr5 180915260 + 84234677 84236280 L1PA4 6152 + 4548 6151 25550 1603 chain 25092 chr5 180915260 + 84241242 84241565 THE1C 375 + 27 349 104336 157 4 3 162 chain 151330 chr5 180915260 + 84271214 84274195 L1PA4 6152 - 0 3060 24425 1604 154 239 17 106 108 87 97 98 13 176 184 53 330 306 14 32 33 25 128 123 48 77 83 13 0 5 7 chain 8869 chr5 180915260 + 84286531 84286633 L1PA4 6152 + 6039 6141 166288 102 chain 29204 chr5 180915260 + 84294542 84294848 AluYb8 318 - 12 318 88029 306 chain 33443 chr5 180915260 + 84302278 84302862 L1PB 1623 - 53 613 78499 17 61 37 12 7 3 13 9 5 29 2 1 7 1 0 240 19 32 159 3 0 5 chain 9004 chr5 180915260 + 84303646 84303932 L1PB1 5432 + 5105 5370 165569 11 17 0 18 1 0 13 23 40 33 23 21 40 8 0 5 1 0 7 19 15 19 22 17 26 chain 85259 chr5 180915260 + 84358856 84359804 L1PA3long 6157 - 0 948 41438 948 chain 48727 chr5 180915260 + 84359829 84360371 L1PA3long 6157 + 4644 5186 59932 542 chain 63067 chr5 180915260 + 84396166 84397027 L1PA8 5853 - 1126 2007 51421 16 4 0 85 0 1 120 12 14 157 8 1 75 0 1 30 1 22 24 0 1 155 1 0 152 1 3 9 0 4 11 chain 81272 chr5 180915260 + 84397031 84398131 L1PA8 5853 + 4733 5853 43054 39 0 7 108 1 3 119 0 2 73 3 6 215 0 9 167 0 3 30 1 2 48 1 0 44 2 0 67 25 23 42 2 1 19 1 0 93 chain 41559 chr5 180915260 + 84407237 84407779 MER9a2 513 + 0 513 67208 94 18 20 102 0 1 78 32 0 218 chain 40774 chr5 180915260 + 84432098 84432563 L1PA4 6152 + 5678 6139 68209 4 1 0 326 3 0 131 chain 24056 chr5 180915260 + 84433513 84433790 AluSp 311 + 5 282 110011 277 chain 59505 chr5 180915260 + 84460735 84461563 LTR17 781 + 0 772 53106 119 0 9 170 10 0 28 0 1 12 0 2 69 18 0 9 19 1 295 45 1 12 2 24 20 chain 20331 chr5 180915260 + 84472396 84472718 THE1D 372 - 40 372 126137 139 34 35 53 6 4 22 0 11 68 chain 3014 chr5 180915260 + 84492782 84492945 L1ME1 1623 - 368 534 224745 19 29 28 19 73 77 23 chain 19157 chr5 180915260 + 84506037 84506270 L1PA5 6144 - 8 240 129656 147 1 0 85 chain 9695 chr5 180915260 + 84509032 84509148 L1PA5 6144 + 6024 6138 162106 54 2 0 60 chain 23558 chr5 180915260 + 84517644 84517932 L1PA4 6152 - 9 292 112809 234 6 1 48 chain 166943 chr5 180915260 + 84523389 84525800 L1PA11 4918 - 414 2781 22402 14 6 5 10 2 0 12 1 0 57 3 0 9 3 2 53 0 1 13 5 0 76 14 0 78 0 1 108 1 0 328 18 7 39 11 10 15 1 0 371 5 6 5 1 0 250 0 3 9 13 10 18 0 1 115 0 3 150 6 0 5 1 0 375 24 16 41 0 1 10 13 17 25 13 14 84 chain 35019 chr5 180915260 + 84531851 84532277 L1PA7 6471 + 5966 6393 76163 167 1 2 258 chain 68357 chr5 180915260 + 84535536 84536338 L1PA5 6144 + 5345 6142 49102 636 16 16 138 5 0 7 chain 29377 chr5 180915260 + 84540505 84540964 MLT2A1 477 - 0 477 87179 37 0 1 17 17 0 9 6 28 181 0 1 6 4 2 21 1 10 116 27 31 17 chain 440568 chr5 180915260 + 84540964 84546654 HERVL-int 5654 - 0 5654 9039 120 21 22 97 1 3 24 30 8 151 49 4 265 6 9 97 4 0 222 1 9 117 4 6 194 16 20 243 3 4 477 0 8 155 1 0 460 5 1 276 2 0 591 0 2 188 0 2 154 5 7 15 5 4 54 0 1 248 0 1 30 0 1 253 1 2 168 1 2 178 0 5 343 4 0 105 0 1 208 0 1 98 chain 13925 chr5 180915260 + 84553311 84553470 L1PA5 6144 - 3 162 144837 159 chain 3490 chr5 180915260 + 84584763 84584823 MSTA 426 - 2 64 215503 28 4 8 21 2 0 5 chain 92053 chr5 180915260 + 84654528 84655507 L1HS 6032 - 0 979 38956 979 chain 17893 chr5 180915260 + 84655507 84655698 L1HS 6032 + 4863 5054 132646 191 chain 7196 chr5 180915260 + 84661475 84661718 L1MC3 1789 - 479 692 176088 49 104 75 33 27 26 30 chain 135378 chr5 180915260 + 84675669 84677171 L1PA3long 6157 - 0 1500 26946 103 1 0 1019 1 0 378 chain 39106 chr5 180915260 + 84677171 84677599 L1PA3long 6157 + 4225 4653 70202 428 chain 12279 chr5 180915260 + 84699619 84699868 THE1D 372 + 123 372 151082 32 0 3 8 78 75 131 chain 40072 chr5 180915260 + 84703596 84704047 L1PA3long 6157 + 5704 6156 69221 119 0 1 332 chain 76540 chr5 180915260 + 84716570 84717422 L1PA3long 6157 - 15 867 45192 852 chain 124741 chr5 180915260 + 84717422 84718799 L1PA3long 6157 + 3934 5313 29468 423 0 4 944 2 0 8 chain 522770 chr5 180915260 + 84727293 84733397 L1PA5 6144 + 0 6130 4889 612 0 1 154 0 2 152 0 4 50 0 1 394 0 2 525 0 1 347 0 2 8 2 0 447 1 0 462 1 0 53 0 1 312 0 2 8 0 1 378 1 0 28 0 2 122 3 14 227 2 0 293 0 1 1383 0 9 87 8 1 44 chain 14306 chr5 180915260 + 84759954 84760150 LTR9B 643 + 0 181 143544 130 22 7 44 chain 89716 chr5 180915260 + 84770349 84771490 L1PA7 6471 + 5332 6466 39747 145 9 5 139 1 0 676 19 20 137 3 0 12 chain 84851 chr5 180915260 + 84788074 84789127 L1PA7 6471 - 2 1064 41572 61 10 11 208 0 2 35 8 0 108 0 2 338 0 1 5 0 1 66 0 10 214 chain 20374 chr5 180915260 + 84801596 84801826 L1PA5 6144 + 5914 6144 125979 230 chain 4211 chr5 180915260 + 84804529 84804585 MLT1A0 366 + 259 313 204416 43 2 0 11 chain 11362 chr5 180915260 + 84824494 84824626 L1P2 5180 - 5042 5174 154847 132 chain 6095 chr5 180915260 + 84835805 84835889 L1PA16 3655 + 3393 3483 184462 21 1 7 62 chain 410709 chr5 180915260 + 84852607 84857954 L1PA8A 6298 + 927 6290 9781 9 0 2 59 9 29 69 1 0 16 39 31 226 6 5 406 0 1 113 0 1 27 9 4 432 1 0 264 4 0 94 10 11 94 2 0 31 0 1 113 0 4 384 14 12 115 0 1 97 3 1 298 1 2 89 0 1 7 15 16 81 16 10 119 0 1 155 0 1 156 1 2 86 0 5 80 0 4 133 5 4 189 5 0 525 3 1 26 5 15 705 chain 501551 chr5 180915260 + 84878059 84884514 L1PA7 6471 - 5 6468 6754 7 1 0 133 5 8 6 2 0 6 1 0 262 14 0 201 0 10 209 0 3 377 1 0 42 0 1 246 3 0 60 0 1 543 0 3 348 1 0 89 5 8 265 0 1 108 2 0 6 0 1 24 0 1 11 4 2 14 0 2 77 10 11 255 1 6 238 4 3 4 1 0 95 0 1 132 5 6 140 1 3 48 5 6 164 1 5 192 0 1 420 0 1 80 0 1 300 8 33 6 25 0 249 11 13 319 29 29 216 14 2 409 chain 57581 chr5 180915260 + 84887209 84888027 THE1A-int 1579 - 824 1579 54194 200 5 6 47 1 0 138 66 3 361 chain 8147 chr5 180915260 + 84895580 84895671 L1PA5 6144 + 5714 5805 170247 91 chain 29478 chr5 180915260 + 84895671 84895995 L1PA5 6144 + 5806 6130 86720 324 chain 8983 chr5 180915260 + 84924677 84924789 L1PA8 5853 - 0 111 165700 93 1 0 18 chain 537572 chr5 180915260 + 84934275 84940324 L1PA3long 6157 + 6 6156 3221 147 1 0 4 6 10 271 20 0 338 0 128 364 3 6 575 0 1 262 14 1 3271 1 0 772 chain 4299 chr5 180915260 + 84942629 84942763 LTR18B 584 - 143 260 203237 19 73 56 42 chain 31114 chr5 180915260 + 84943524 84943978 LTR71A 459 - 0 459 82316 106 25 28 16 3 4 61 5 6 32 8 9 99 1 0 98 chain 544838 chr5 180915260 + 84953411 84959459 L1PA2 6032 - 0 6029 2094 306 0 1 1345 2 1 1239 0 1 576 0 1 2124 20 0 182 1 0 253 chain 6383 chr5 180915260 + 84989003 84989079 L1PA16 3655 + 3331 3407 182162 76 chain 477619 chr5 180915260 + 85016992 85023272 L1PA7 6471 + 183 6467 7809 203 55 40 145 0 3 33 7 0 3 9 0 9 4 0 236 1 2 216 1 0 84 0 1 171 11 28 124 1 2 12 0 1 128 22 22 106 5 1 120 2 0 162 6 5 192 7 8 400 0 1 31 0 2 486 3 5 175 34 35 109 14 13 47 0 4 123 8 0 339 1 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85865904 LTR12C 1709 - 0 1709 28715 102 0 1 4 1 30 344 0 4 6 1 0 59 0 47 99 1 120 56 1 0 221 0 1 37 2 1 51 0 1 55 0 3 8 5 0 459 chain 42813 chr5 180915260 + 85868810 85869357 MER41A 554 + 0 554 65635 336 1 5 37 1 0 30 0 4 142 chain 81531 chr5 180915260 + 85877142 85878075 L1PA5 6144 + 5214 6142 42966 156 0 2 763 7 0 7 chain 3097 chr5 180915260 + 85892691 85892726 MER20 218 + 42 77 222970 35 chain 67135 chr5 180915260 + 85892960 85893811 L1PA7 6471 + 5616 6466 49594 9 0 1 84 1 0 187 1 0 237 1 0 109 0 1 119 8 0 6 1 9 88 chain 28850 chr5 180915260 + 85899995 85900369 THE1C 375 - 0 375 89671 194 4 0 4 0 1 30 0 4 142 chain 258382 chr5 180915260 + 85955364 85958960 L1PA11 4918 - 292 3858 15787 15 60 44 13 1 0 15 50 37 13 1 0 14 2 0 69 1 0 11 3 2 68 3 0 11 6 11 110 5 4 143 6 7 71 2 1 450 5 0 328 0 1 6 9 4 41 6 9 48 0 25 75 11 6 93 0 1 160 0 1 11 5 1 159 5 0 282 2 4 59 2 1 387 3 0 111 1 2 6 1 0 399 2 0 5 0 2 5 7 6 219 chain 9748 chr5 180915260 + 85966746 85966879 MLT2A2 560 - 6 144 161096 110 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61978 10 3 1 326 0 1 201 chain 50322 chr5 180915260 + 86845005 86845576 L1PA4 6152 - 0 661 58771 243 4 94 324 chain 50528 chr5 180915260 + 86845576 86846151 L1PA4 6152 + 4918 5484 58634 155 9 0 411 chain 295733 chr5 180915260 + 86858188 86862106 L1PA7 6471 - 5 3664 13659 8 0 2 4 0 1 121 0 1 549 1 0 78 0 2 395 0 5 4 0 1 110 2 0 83 1 0 83 0 1 37 1 2 521 9 10 175 1 0 31 276 0 240 6 0 114 0 1 281 1 0 121 0 13 99 5 4 261 0 1 300 chain 45195 chr5 180915260 + 86871767 86872739 MER11C 1089 + 6 1074 62830 49 0 91 113 0 3 99 0 5 94 8 11 6 4 0 18 0 1 4 212 210 13 1 0 15 52 50 15 6 8 11 13 14 35 11 6 6 0 6 115 1 0 55 2 1 14 chain 29143 chr5 180915260 + 86879630 86879980 L1PA8A 6298 + 5931 6281 88352 75 1 0 10 0 1 264 chain 455109 chr5 180915260 + 86885277 86890928 HERVL-int 5654 - 0 5654 8576 223 0 1 26 0 1 180 24 4 831 0 1 204 0 1 158 0 3 118 0 1 31 0 1 137 0 3 49 1 4 82 0 1 68 4 0 578 0 1 167 1 3 234 2 1 268 0 4 485 4 5 133 1 0 460 0 1 279 0 2 558 0 1 283 0 1 62 chain 20020 chr5 180915260 + 86893356 86893663 THE1B 368 - 57 368 127084 69 1 0 12 4 3 14 0 4 8 0 3 29 1 0 37 26 25 4 0 1 102 chain 21741 chr5 180915260 + 86907763 86908033 AluY 311 + 0 275 121239 123 0 5 147 chain 7782 chr5 180915260 + 86935046 86935138 LTR1 825 - 717 809 172403 92 chain 26436 chr5 180915260 + 86937994 86938359 THE1B 368 + 0 368 98281 15 2 0 24 3 8 125 2 1 152 1 2 41 chain 8207 chr5 180915260 + 86940460 86940581 MER2 342 + 152 279 169911 54 5 11 62 chain 182170 chr5 180915260 + 86988948 86994602 L1PA10 4194 - 33 2669 20766 11 2 1 28 8 5 482 2 1 187 1 0 5 0 3 20 12 10 274 22 23 33 3057 9 82 0 1 157 1 0 5 0 1 101 2 0 21 17 25 26 6 5 21 0 1 11 8 4 379 1 5 181 0 2 116 5 10 104 0 4 34 12 25 31 6 7 83 0 2 100 chain 121450 chr5 180915260 + 86990061 86991449 L1PA5 6144 - 4 1395 30477 768 0 2 149 0 1 471 chain 142539 chr5 180915260 + 86991449 86993090 L1PA5 6144 + 3088 4734 25718 88 1 0 1168 0 4 46 0 2 338 chain 3175 chr5 180915260 + 86994618 86994655 L1PA10 4194 - 2632 2669 221433 37 chain 3084 chr5 180915260 + 86994671 86994707 L1PA10 4194 - 2632 2668 223253 36 chain 90217 chr5 180915260 + 87014553 87016774 HUERS-P1-int 2401 - 353 2231 39571 7 1 0 3 1 0 15 44 21 13 5 0 13 1 0 38 2 1 12 1 0 5 27 0 22 16 0 9 31 21 18 7 0 7 3 1 7 1 0 8 100 79 11 2 0 13 6 0 7 40 28 27 4 0 10 2 0 24 2 3 43 3 4 42 18 21 55 8 7 8 2 0 10 5 8 21 1 0 18 1 0 8 2 0 30 0 1 69 20 12 28 2 0 80 3 0 28 1 0 10 1 0 25 0 1 21 2 1 11 5 1 36 2 0 10 1 0 8 1 0 29 1 2 24 8 4 119 11 3 107 1 5 19 10 0 100 1 0 24 10 7 10 16 7 11 42 25 7 2 0 24 2 0 8 1 0 38 1 0 7 3 0 43 1 0 13 1 0 7 30 6 13 89 58 11 4 0 34 4 0 13 1 0 25 63 6 29 chain 19282 chr5 180915260 + 87039279 87039752 MER101 471 - 1 463 129284 95 63 47 24 31 26 80 105 115 75 chain 24575 chr5 180915260 + 87057442 87057753 L1PA8 5853 - 0 305 107107 93 1 0 19 2 1 61 1 0 69 2 0 46 1 0 16 chain 4769 chr5 180915260 + 87105329 87105421 L1PB1 5432 - 13 100 197705 15 15 13 21 1 0 24 2 0 14 chain 18852 chr5 180915260 + 87126330 87126666 THE1B 368 - 2 363 130509 117 34 48 6 3 0 22 2 1 81 32 47 39 chain 34090 chr5 180915260 + 87152223 87152614 L1PA7 6471 - 2 396 77485 11 0 2 319 0 1 61 chain 67992 chr5 180915260 + 87156753 87157735 L1PB3 3668 + 1800 2777 49251 30 23 19 15 1 0 4 0 1 133 5 6 92 9 7 228 0 1 255 1 0 7 0 1 61 6 5 59 8 0 9 1 9 35 chain 255875 chr5 180915260 + 87178397 87181424 L1PA5 6144 - 2 3035 15942 7 2 0 1257 0 1 247 1 4 231 3 0 236 0 1 298 2 0 187 0 1 296 23 30 237 chain 496407 chr5 180915260 + 87214810 87220929 L1PA6 6164 - 2 6164 7047 168 6 7 843 1 2 42 0 1 5 2 0 450 0 1 275 0 5 183 0 1 226 0 1 12 6 5 355 0 4 46 1 0 95 0 1 133 0 1 72 1 0 12 0 1 16 3 4 464 12 22 383 0 1 461 0 5 271 4 5 130 0 1 223 5 6 35 11 12 219 0 1 152 0 17 220 1 0 118 8 0 20 8 7 171 0 1 4 1 0 124 0 1 121 chain 6399 chr5 180915260 + 87254121 87254191 L1PA2 6032 - 18 88 182030 70 chain 7027 chr5 180915260 + 87257506 87257726 MLT1B 390 - 21 217 177277 66 75 55 27 21 19 11 6 4 14 chain 27046 chr5 180915260 + 87262768 87263122 L1PB1 5432 - 579 934 96126 25 1 2 13 0 1 186 3 0 20 10 11 51 0 1 45 chain 28599 chr5 180915260 + 87263135 87263780 L1PB1 5432 + 4883 5422 90736 87 1 0 31 1 2 79 110 35 18 1 0 11 1 0 10 17 11 53 2 1 15 1 0 26 0 2 11 7 6 15 3 0 6 23 13 11 10 7 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 114781 chr5 180915260 + 87268461 87270018 THE1B-int 1605 - 24 1605 32852 641 3 1 137 51 50 58 16 19 156 3 0 59 7 32 121 0 1 167 0 1 138 chain 4052 chr5 180915260 + 87275686 87275782 L1PA15-16 3068 - 2745 2838 206620 39 26 25 10 3 1 18 chain 500308 chr5 180915260 + 87286313 87292109 L1PA5 6144 + 0 6143 6817 148 1 25 257 0 1 592 0 1 20 0 1 22 24 24 1533 10 14 331 0 1 582 0 315 413 0 2 1850 3 1 10 chain 5409 chr5 180915260 + 87294656 87294728 L1ME1 1623 + 1261 1333 190900 72 chain 64533 chr5 180915260 + 87298207 87299408 L1PB1 5432 - 5 1005 50781 4 1 0 32 1 0 21 1 0 24 2 0 14 1 0 5 2 0 11 32 20 15 1 0 54 9 8 33 0 1 17 2 0 9 5 1 14 1 0 10 195 21 10 1 0 34 0 1 88 0 3 64 0 1 106 1 2 164 2 0 13 2 0 106 0 5 51 16 11 27 chain 41285 chr5 180915260 + 87299408 87299954 L1PB1 5432 + 3859 4413 67076 98 11 12 25 0 4 58 13 15 108 6 7 227 chain 544170 chr5 180915260 + 87305271 87311439 L1PA4 6152 - 1 6152 2194 64 19 0 49 10 14 3141 0 1 764 0 1 1047 2 1 489 1 0 526 2 0 54 chain 43887 chr5 180915260 + 87319385 87320126 L1PA15 4387 - 71 806 64348 39 28 25 11 1 0 24 4 3 7 4 0 22 1 0 45 16 20 18 1 0 91 1 2 32 0 1 44 1 0 9 0 3 9 0 2 13 7 5 60 6 0 19 2 0 20 15 20 191 chain 9695 chr5 180915260 + 87333022 87333288 MLT1B 390 - 18 278 162109 97 110 105 28 9 8 22 chain 145034 chr5 180915260 + 87333649 87336060 L1PB2 3958 - 120 2180 25320 52 7 1 7 0 5 20 2 0 74 2 1 8 0 1 46 9 8 75 1 0 89 19 12 62 4 0 14 1 0 57 2 0 170 34 22 183 12 11 198 3 6 101 8 7 114 26 15 121 0 1 4 24 23 309 309 0 88 2 1 154 chain 4854 chr5 180915260 + 87336083 87336144 MLT1B 390 - 265 326 196739 61 chain 544865 chr5 180915260 + 87348147 87354162 L1PA2 6032 + 1 6032 2090 251 5 4 2264 0 3 2829 0 2 171 0 12 495 chain 230991 chr5 180915260 + 87367849 87373928 L1PA14 3548 + 94 3465 17254 54 4 0 24 369 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43421 10 1 0 46 1 0 867 chain 290146 chr5 180915260 + 87463861 87467427 L1PA7 6471 - 1 3589 14012 156 0 7 64 7 10 331 5 8 192 0 2 79 1 0 374 1 3 4 0 1 314 0 1 20 8 19 1049 8 0 122 1 2 215 1 0 254 4 0 6 0 4 280 1 2 69 chain 26079 chr5 180915260 + 87472587 87472902 LTR17 781 - 455 781 99709 17 10 0 181 0 9 78 0 12 29 chain 40140 chr5 180915260 + 87473184 87473700 LTR17 781 - 0 528 69127 49 1 23 342 1 0 39 1 2 17 10 0 56 chain 5726 chr5 180915260 + 87476598 87476690 L1MA3 4352 + 4221 4314 187874 5 0 2 32 2 0 20 1 3 5 1 0 26 chain 71293 chr5 180915260 + 87485701 87486546 HERVE-int 4064 - 0 848 47805 401 5 7 251 2 0 151 1 4 34 chain 4246 chr5 180915260 + 87521083 87521149 Tigger2a 444 + 285 355 203934 12 5 9 49 chain 70284 chr5 180915260 + 87560016 87560917 L1PA8 5853 + 4957 5853 48276 54 0 2 71 0 2 82 10 9 213 4 0 174 2 1 41 0 2 51 0 2 5 2 0 14 1 0 8 1 0 47 11 10 15 1 0 17 1 0 76 chain 385245 chr5 180915260 + 87601574 87606246 L1P2 5180 + 2 4698 10597 148 1 0 47 0 1 6 1 0 30 0 2 11 1 0 10 1 0 237 0 5 15 0 1 48 1 0 156 2 8 56 0 15 21 17 0 310 0 2 42 13 16 632 1 4 45 0 1 120 1 0 429 0 1 135 1 0 4 0 1 232 0 4 442 2 0 915 6 10 196 0 2 309 1 0 27 chain 326386 chr5 180915260 + 87606246 87609959 L1P1 4361 - 642 4360 12328 41 0 2 3349 0 3 323 chain 28018 chr5 180915260 + 87619215 87619511 AluYk11 308 + 0 296 92941 296 chain 27007 chr5 180915260 + 87629004 87629295 AluY 311 + 14 306 96257 118 0 1 173 chain 123282 chr5 180915260 + 87629680 87631023 L1PA3long 6157 - 974 2317 29949 1343 chain 88126 chr5 180915260 + 87631023 87631990 L1PA3long 6157 + 5190 6157 40258 116 0 1 366 1 0 484 chain 18830 chr5 180915260 + 87644024 87644236 L1PA5 6144 - 2 214 130576 212 chain 105600 chr5 180915260 + 87644813 87646060 L1P2 5180 - 2340 3610 35350 272 1 20 29 0 9 191 0 1 371 6 0 377 chain 132383 chr5 180915260 + 87646062 87647645 L1PA6 6164 + 4599 6160 27545 190 22 0 55 3 5 5 2 0 454 1 0 106 0 3 87 0 3 646 5 0 7 chain 49934 chr5 180915260 + 87658395 87658951 L1PA5 6144 - 4 560 59066 556 chain 38771 chr5 180915260 + 87661904 87662454 MER41D 557 + 1 557 71052 164 0 3 182 10 12 49 15 14 37 18 20 75 chain 28986 chr5 180915260 + 87676200 87676540 LTR14A 344 + 0 344 89064 166 0 4 174 chain 9233 chr5 180915260 + 87703695 87703800 L1PA4 6152 + 6048 6152 164381 99 1 0 5 chain 6650 chr5 180915260 + 87723143 87723231 MLT1B 390 + 293 380 180087 5 1 0 82 chain 24318 chr5 180915260 + 87727695 87728065 THE1D 372 - 0 372 108554 96 6 0 52 17 18 12 27 34 160 chain 58614 chr5 180915260 + 87753818 87754477 L1PA5 6144 + 5481 6140 53632 659 chain 11048 chr5 180915260 + 87759572 87759711 L1P5 443 - 284 423 156022 139 chain 3782 chr5 180915260 + 87823842 87823894 MADE1 96 + 28 96 210637 14 1 17 37 chain 26778 chr5 180915260 + 87827939 87828286 L1PA7 6471 + 6109 6467 97054 89 17 28 241 chain 22171 chr5 180915260 + 87829578 87829933 THE1C 375 - 0 370 119490 20 6 5 165 2 3 67 5 8 23 28 37 34 0 3 5 chain 8698 chr5 180915260 + 87860117 87860228 L1PA7 6471 - 6 114 167205 8 3 0 100 chain 70300 chr5 180915260 + 87864083 87864909 L1PA5 6144 + 5315 6141 48264 206 0 2 464 9 10 133 3 0 11 chain 336086 chr5 180915260 + 87883331 87888026 L1PA11 4918 + 10 4578 11996 4 1 0 28 2 0 36 4 1 35 0 2 5 3 0 7 2 0 52 11 7 26 2 0 8 1 0 270 0 1 377 68 0 222 4 5 90 1 0 219 2 5 190 0 4 196 4 0 15 4 1 11 7 0 388 6 5 36 0 3 24 0 4 46 5 6 285 6 4 357 0 2 40 0 1 4 8 20 147 0 1 35 0 1 191 0 1 203 5 6 64 13 12 55 0 2 422 4 7 26 0 4 51 48 1 45 11 6 61 2 1 14 4 1 65 2 0 14 1 0 20 44 31 15 1 0 11 0 4 9 chain 4590 chr5 180915260 + 87895722 87895775 MER1B 344 - 5 58 199747 53 chain 3641 chr5 180915260 + 87896860 87896905 MADE1 96 + 1 46 212954 45 chain 137353 chr5 180915260 + 87911037 87912636 SVA_D 2077 + 0 2065 26581 19 5 0 40 0 2 43 0 27 328 0 76 190 0 3 33 3 0 135 31 174 150 2 225 620 chain 2267 chr5 180915260 + 87911833 87911864 SVA_D 2077 + 856 887 90443 31 chain 515579 chr5 180915260 + 87913271 87919418 L1PA6 6164 - 2 6160 5610 992 1 0 725 4 5 21 1 0 543 1 3 255 0 2 92 0 1 75 0 2 207 0 1 21 2 1 26 0 1 21 8 7 160 0 1 120 0 1 339 0 1 213 0 1 1041 0 1 1279 chain 12226 chr5 180915260 + 87945183 87945488 L1PB1 5432 + 5145 5422 151314 12 17 11 8 0 1 42 1 0 17 1 0 45 82 65 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 13103 chr5 180915260 + 87947330 87947526 MER30 238 - 0 238 147834 100 3 0 7 17 62 69 chain 29313 chr5 180915260 + 88043154 88043465 AluYa5 310 - 0 310 87493 184 1 0 126 chain 472983 chr5 180915260 + 88089473 88095205 L1PA7 6471 - 10 5754 7947 5 0 1 838 0 3 310 2 1 37 1 0 4 0 1 312 1 0 267 0 4 284 1 2 298 0 1 321 5 6 161 7 11 27 1 0 14 0 4 89 0 5 33 0 6 96 5 2 274 0 3 39 12 8 289 2 1 63 19 0 119 0 2 518 1 6 33 0 1 84 0 2 156 2 1 559 1 3 11 1 0 161 1 0 268 chain 5426 chr5 180915260 + 88099562 88099627 L1PA2 6032 + 5967 6032 190740 65 chain 20729 chr5 180915260 + 88145763 88146018 L1PA4 6152 - 9 265 124861 140 0 1 70 1 0 5 0 1 39 chain 111263 chr5 180915260 + 88151694 88153334 THE1C-int 1605 + 0 1605 33875 12 4 3 103 1 59 263 98 24 288 0 9 9 12 11 42 0 1 145 0 5 26 29 28 141 10 0 272 29 8 156 chain 5646 chr5 180915260 + 88186327 88186398 MER3 215 - 93 164 188597 71 chain 34835 chr5 180915260 + 88216125 88216574 L1PA8 5853 - 1 443 76428 92 1 0 19 2 1 51 12 10 71 2 0 44 1 0 154 chain 23510 chr5 180915260 + 88236055 88236338 AluSg7 307 - 23 307 113072 152 0 1 131 chain 26034 chr5 180915260 + 88259088 88259410 L1PA6 6164 + 5835 6150 99884 168 7 0 13 1 2 4 1 0 128 chain 356182 chr5 180915260 + 88284353 88288500 L1PA5 6144 - 1115 5265 11449 11 0 1 821 0 1 263 0 1 253 1 0 944 3 0 288 0 1 1008 0 9 55 1 0 202 9 0 14 0 3 158 0 1 116 chain 91929 chr5 180915260 + 88288502 88289593 L1PA5 6144 + 5041 6132 38987 332 8 10 532 3 0 81 1 2 134 chain 110845 chr5 180915260 + 88298564 88299953 LTR12C 1709 - 0 1667 33989 84 8 7 390 19 13 97 1 158 93 0 118 235 0 1 48 0 1 32 0 1 58 0 2 104 1 3 85 0 3 134 chain 29110 chr5 180915260 + 88303806 88304112 AluYb8 318 + 0 306 88504 306 chain 23886 chr5 180915260 + 88321784 88322144 THE1B 368 - 0 368 110984 125 17 19 10 5 9 11 11 14 11 1 0 169 chain 106880 chr5 180915260 + 88322154 88323720 THE1B-int 1605 - 11 1605 35009 106 0 2 187 18 14 101 5 4 218 1 2 4 1 0 192 15 9 21 29 29 158 1 2 81 12 84 100 0 6 128 42 0 96 1 0 27 10 11 12 chain 18825 chr5 180915260 + 88335309 88335531 L1PA5 6144 - 2 220 130590 7 4 0 211 chain 22057 chr5 180915260 + 88335531 88335798 L1PA5 6144 + 5534 5801 119986 22 12 0 9 0 12 224 chain 73590 chr5 180915260 + 88345569 88346582 MER11A 1151 + 0 1151 46739 55 0 99 140 4 0 135 14 15 9 1 0 81 17 19 118 17 20 54 0 4 70 6 40 279 1 0 8 0 1 4 chain 489063 chr5 180915260 + 88454696 88461031 L1PA7 6471 + 0 6468 7407 293 4 3 689 5 6 20 18 19 173 10 14 416 18 15 428 0 1 90 4 0 277 17 360 85 6 10 303 1 3 324 2 4 74 1 0 229 0 15 151 1 0 194 246 13 685 10 6 376 0 5 168 0 1 104 0 1 66 8 7 680 12 13 147 chain 11091 chr5 180915260 + 88458529 88458664 L1PA7 6471 + 4209 4344 155836 135 chain 9454 chr5 180915260 + 88458664 88458775 L1PA7 6471 + 4085 4196 161617 111 chain 3518 chr5 180915260 + 88468851 88468921 MER20 218 + 33 105 215098 34 16 18 20 chain 50746 chr5 180915260 + 88481318 88481869 L1PA3long 6157 - 974 1525 58405 551 chain 87919 chr5 180915260 + 88481869 88482817 L1PA3long 6157 + 5189 6137 40403 948 chain 280567 chr5 180915260 + 88490500 88494030 L1PA8A 6298 - 328 3883 14613 366 7 5 109 2 1 91 1 0 161 1 0 4 0 1 408 1 0 151 0 1 5 1 0 268 0 4 232 1 7 27 0 1 146 8 14 78 0 1 215 0 1 169 0 1 22 0 1 371 0 1 480 0 4 59 0 1 16 0 2 44 0 1 86 chain 3913 chr5 180915260 + 88512168 88512219 FordPrefect_a 431 + 338 388 208659 17 1 0 33 chain 363073 chr5 180915260 + 88515729 88520149 L1P2 5180 + 2 4397 11289 148 1 0 50 1 0 47 3 2 258 1 0 8 1 0 272 1 0 6 1 0 928 0 1 595 1 2 100 1 0 133 1 0 278 0 1 188 0 1 97 28 9 50 0 1 109 9 6 184 1 0 816 0 2 103 chain 2947 chr5 180915260 + 88520794 88520833 L1MB7 1623 - 1453 1500 226161 22 0 8 17 chain 12035 chr5 180915260 + 88563233 88563384 L1PA7 6471 + 6321 6469 152054 138 3 0 10 chain 20976 chr5 180915260 + 88584193 88584432 L1PA5 6144 - 5 244 124008 239 chain 54438 chr5 180915260 + 88602820 88603460 L1PA7 6471 - 11 651 56073 27 0 1 191 1 0 421 chain 20617 chr5 180915260 + 88605877 88607579 L1PB1 5432 - 12 435 125235 16 1 0 13 1 0 21 1 0 24 2 0 12 13 10 16 24 12 16 1 0 43 19 17 51 2 0 11 1299 42 10 0 3 106 chain 30135 chr5 180915260 + 88612242 88612610 L1PA7 6471 - 7 376 84365 332 0 1 36 chain 13222 chr5 180915260 + 88624794 88624987 MSTA 426 - 226 426 147384 40 22 28 28 0 1 103 chain 32230 chr5 180915260 + 88627425 88627810 L1PA7 6471 - 20 405 80470 385 chain 24940 chr5 180915260 + 88627810 88628114 L1PA7 6471 + 5317 5621 102951 304 chain 36383 chr5 180915260 + 88628115 88628542 L1PA7 6471 + 5621 6050 74384 79 0 2 348 chain 2736 chr5 180915260 + 88684998 88685183 MLT1E1 597 + 364 549 229671 19 4 5 16 125 124 21 chain 16989 chr5 180915260 + 88712519 88712846 THE1C 375 + 0 328 135618 83 14 0 26 1 0 4 10 31 10 19 0 18 28 41 5 3 0 82 0 4 24 chain 104614 chr5 180915260 + 88718667 88720197 L1PB2 3958 + 2290 3838 35592 154 0 22 17 21 17 92 1 0 277 9 10 46 1 21 97 10 4 82 3 4 174 2 0 20 6 8 25 0 3 12 14 9 55 21 14 92 1 0 72 1 0 64 1 0 72 2 0 22 8 7 56 chain 42543 chr5 180915260 + 88772564 88773069 L1PA7 6471 - 9 515 65970 146 0 1 359 chain 30353 chr5 180915260 + 88773321 88773639 AluYb8 318 - 0 318 83770 318 chain 25905 chr5 180915260 + 88800428 88800891 L1PB3 3668 + 3160 3596 100411 29 3 0 105 1 0 71 0 2 21 15 14 67 0 2 7 22 6 11 2 0 8 1 0 19 9 7 37 7 3 12 2 1 14 chain 86450 chr5 180915260 + 88802488 88803759 L1PA14 3548 + 2181 3456 40990 29 2 1 243 0 1 80 5 4 73 0 1 70 3 0 4 0 1 82 0 3 160 8 6 14 2 0 38 9 7 7 2 0 39 0 2 64 2 0 5 5 3 13 2 0 6 1 0 45 0 27 12 1 0 76 0 1 30 20 15 36 4 2 12 1 0 3 1 0 19 2 0 41 chain 24579 chr5 180915260 + 88817216 88817523 THE1C-int 1605 - 1283 1590 107090 307 chain 13609 chr5 180915260 + 88819706 88819872 THE1B 368 - 0 166 145943 166 chain 24898 chr5 180915260 + 88885466 88885820 THE1A 353 + 1 353 105357 12 2 0 34 0 1 46 1 0 13 17 18 72 1 0 156 chain 22508 chr5 180915260 + 88885820 88886092 THE1A-int 1579 + 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180915260 + 88949033 88949390 THE1B 368 - 1 368 98441 74 1 0 94 1 3 28 2 0 15 4 0 88 0 9 6 0 6 44 chain 16305 chr5 180915260 + 88970482 88970832 L1PB1 5432 + 5103 5414 137469 16 7 0 19 3 1 5 1 0 12 2 0 3 2 0 8 2 0 53 2 1 15 1 0 45 1 0 15 24 12 14 7 5 5 1 0 14 2 0 24 1 0 14 8 7 13 1 0 10 chain 149851 chr5 180915260 + 88975145 88977300 L1MA1 4479 + 228 2410 24635 22 1 5 24 2 0 81 1 3 73 0 4 227 0 3 57 8 8 45 8 7 105 9 11 80 4 0 34 0 4 12 13 17 45 0 2 29 1 0 104 31 35 76 1 2 304 2 1 34 1 0 189 0 2 78 9 10 121 3 1 6 0 2 20 5 9 290 chain 20586 chr5 180915260 + 89006813 89007113 AluSp 311 + 0 295 125344 17 4 3 121 2 1 71 2 1 60 10 8 13 chain 208013 chr5 180915260 + 89032327 89034707 L1P1 4361 - 20 2402 18637 12 2 1 23 1 0 155 1 0 107 1 2 378 1 2 980 0 1 560 0 2 159 chain 453906 chr5 180915260 + 89037079 89043380 L1PA8A 6298 - 7 6264 8618 397 1 2 25 0 1 152 23 24 110 1 0 90 4 1 482 13 13 175 1 0 370 4 5 180 31 33 359 0 1 508 42 15 78 0 1 11 0 2 282 0 4 60 1 17 329 1 0 62 1 2 173 1 2 18 0 5 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5 0 1 449 0 12 482 1 7 1633 0 4 88 1 0 461 19 25 271 chain 26395 chr5 180915260 + 89589165 89589824 THE1A 353 + 0 353 98433 12 3 1 35 0 1 47 1 0 193 304 0 64 chain 7497 chr5 180915260 + 89609020 89609227 MLT2B3 573 - 369 573 174173 18 104 101 85 chain 37204 chr5 180915260 + 89639402 89639869 LTR2 463 + 0 463 73233 61 0 3 13 0 1 64 8 0 73 0 5 7 5 0 236 chain 4312 chr5 180915260 + 89640171 89640224 MER104 178 - 1 54 203074 53 chain 46093 chr5 180915260 + 89647164 89647714 MLT2A2 560 + 0 552 61952 204 0 1 187 0 1 159 chain 52227 chr5 180915260 + 89657818 89659603 L1PA16 3655 + 2355 3084 57486 137 0 1 21 7 6 151 10 9 22 0 1 198 1 0 16 1 0 37 1054 0 130 chain 46136 chr5 180915260 + 89658435 89659099 L1PB2 3958 + 3181 3838 61906 76 0 5 45 2 0 55 1 0 73 19 16 4 1 0 90 1 0 72 1 0 55 8 7 74 2 0 22 1 0 46 0 1 16 chain 16146 chr5 180915260 + 89660321 89660553 THE1C 375 - 140 375 137912 37 21 24 174 chain 36733 chr5 180915260 + 89676499 89677309 MER41A 554 - 10 554 73909 52 14 13 94 288 0 289 9 10 17 5 27 42 chain 3706 chr5 180915260 + 89722861 89722907 MER115 684 - 56 102 211870 46 chain 3020 chr5 180915260 + 89731799 89731831 LTR16C 481 - 43 75 224623 32 chain 83897 chr5 180915260 + 89738853 89739756 L1PA2 6032 - 18 921 41952 903 chain 70747 chr5 180915260 + 89739756 89740519 L1PA2 6032 + 4356 5119 47949 763 chain 20555 chr5 180915260 + 89773509 89773874 MER51B 395 - 0 395 125457 53 8 12 62 23 25 61 2 1 65 10 16 26 21 40 34 chain 9053 chr5 180915260 + 89779002 89779111 LTR8 732 + 586 695 165296 109 chain 11405 chr5 180915260 + 89823163 89823378 Tigger4 2445 + 2136 2346 154678 19 0 9 21 1 0 25 10 4 54 2 1 15 2 1 25 15 10 26 chain 24280 chr5 180915260 + 89831685 89831991 AluY 311 + 8 305 108771 110 17 8 179 chain 466866 chr5 180915260 + 89871941 89877609 L1PA6 6164 - 8 5576 8155 602 4 0 51 0 3 160 1 0 32 1 0 239 6 7 62 0 1 32 2 1 600 0 4 15 0 1 238 0 1 577 0 1 212 0 7 929 5 1 452 185 8 11 0 9 268 0 28 360 2 1 414 0 33 208 chain 14884 chr5 180915260 + 89876168 89876342 L1PA6 6164 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61007 167 4 2 6 0 2 394 chain 110483 chr5 180915260 + 89915422 89916644 L1PA4 6152 - 3 1230 34078 364 0 1 474 5 9 379 chain 515046 chr5 180915260 + 89958752 89964452 L1PA3long 6157 - 322 6157 5667 2007 0 1 1617 0 4 1183 0 1 113 0 128 628 0 1 152 chain 22333 chr5 180915260 + 89977695 89977954 AluSp 311 - 22 283 118759 35 0 2 224 chain 110947 chr5 180915260 + 89982033 89983262 L1PA3long 6157 - 0 1233 33949 843 0 4 386 chain 82188 chr5 180915260 + 89983262 89984165 L1PA3long 6157 + 4041 4949 42645 579 0 4 260 0 1 64 chain 8416 chr5 180915260 + 90013125 90013218 L1PA5 6144 + 6050 6143 168745 93 chain 20372 chr5 180915260 + 90068709 90069001 AluSz6 309 + 8 298 125988 36 11 10 84 13 12 148 chain 143599 chr5 180915260 + 90080563 90082218 L1PA6 6164 + 4480 6156 25543 381 0 15 436 0 4 91 0 1 423 0 1 324 chain 518045 chr5 180915260 + 90090501 90096888 L1PA7 6471 + 0 6461 5378 23 0 1 215 14 15 46 2 0 6 0 1 96 14 0 9 2 0 165 3 0 165 0 5 488 0 4 7 23 42 171 0 1 293 4 0 8 0 3 49 0 6 205 0 1 296 1 2 214 0 11 84 15 0 464 0 4 61 0 45 206 0 4 369 1 0 685 0 4 7 4 0 351 1 0 317 0 1 472 0 2 76 0 2 400 0 2 193 2 1 14 6 9 140 chain 529152 chr5 180915260 + 90112230 90118253 L1PA4 6152 - 1 6146 4282 857 1 0 3197 5 6 1191 7 135 67 7 0 122 1 0 318 0 1 23 5 0 6 1 6 65 3 4 147 chain 14969 chr5 180915260 + 90118769 90118946 L1P1 4361 - 41 216 141414 15 1 0 155 1 0 5 chain 18244 chr5 180915260 + 90129402 90129721 L1MA3 4352 - 1796 2118 132222 40 5 0 48 23 30 76 29 31 18 1 0 79 chain 114832 chr5 180915260 + 90142269 90143839 LTR12C 1709 - 0 1709 32838 84 1 0 83 0 102 212 11 4 17 24 0 51 0 47 272 1 0 47 1 2 85 41 0 29 0 4 286 3 46 51 15 17 36 6 26 14 6 0 194 chain 3337 chr5 180915260 + 90143158 90143199 LTR12C 1709 - 847 887 94379 25 1 0 15 chain 28417 chr5 180915260 + 90212448 90212748 AluYa5 310 - 10 310 91516 300 chain 550099 chr5 180915260 + 90219447 90225475 L1PA2 6032 - 1 6032 1436 871 1 0 429 0 1 149 0 1 1448 1 0 1051 0 2 104 1 2 1973 chain 536858 chr5 180915260 + 90265562 90271681 L1PA5 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0 21 2 1 38 27 26 12 5 4 56 4 0 116 1 0 19 0 2 19 14 4 61 20 14 38 4 5 104 chain 11282 chr5 180915260 + 90372684 90372810 L1PA6 6164 - 4 130 155119 126 chain 12273 chr5 180915260 + 90378929 90379069 L1PA5 6144 + 5855 5995 151101 140 chain 13300 chr5 180915260 + 90379070 90379219 L1PA5 6144 + 5995 6144 147076 149 chain 82395 chr5 180915260 + 90380106 90381041 L1PA6 6164 + 5215 6150 42588 935 chain 14432 chr5 180915260 + 90400320 90400572 L1MA5A 2387 - 88 304 143104 4 1 0 65 28 0 11 3 0 32 1 0 32 7 5 42 1 0 25 chain 3672 chr5 180915260 + 90400610 90400654 MADE1 96 - 50 94 212343 44 chain 3967 chr5 180915260 + 90402874 90402934 MER5A 189 - 43 104 207880 18 4 5 38 chain 4583 chr5 180915260 + 90453304 90453358 Charlie2b 853 - 246 300 199834 54 chain 109463 chr5 180915260 + 90494547 90495943 L1PA11 4918 + 3119 4508 34325 183 0 1 47 4 3 17 0 3 588 0 1 362 11 4 76 5 4 67 2 0 13 1 0 20 chain 107158 chr5 180915260 + 90525489 90527008 THE1C-int 1605 - 0 1589 34929 137 0 5 348 21 16 83 32 31 291 15 16 69 33 34 123 0 7 98 1 2 10 4 10 11 0 1 143 3 0 17 0 57 80 chain 5847 chr5 180915260 + 90562900 90562966 MER41B 635 + 481 547 186716 66 chain 66197 chr5 180915260 + 90569160 90569874 L1PA2 6032 - 857 1571 50003 714 chain 65316 chr5 180915260 + 90569874 90570572 L1PA2 6032 + 5334 6032 50418 698 chain 26444 chr5 180915260 + 90574711 90574988 AluYb9 318 - 0 277 98253 277 chain 22955 chr5 180915260 + 90578188 90578581 THE1D 372 + 0 372 115828 75 19 0 9 1 1 50 0 4 50 14 0 8 13 30 46 3 0 38 6 3 34 5 2 22 chain 21710 chr5 180915260 + 90580917 90581270 THE1B 368 - 0 368 121352 56 8 6 5 0 1 24 1 0 75 7 6 22 1 0 87 27 42 31 0 4 9 chain 34136 chr5 180915260 + 90593664 90594082 MER41A 554 - 130 554 77430 15 0 4 312 0 1 30 0 1 61 chain 2940 chr5 180915260 + 90596649 90596683 THE1D 372 - 1 35 226340 34 chain 18834 chr5 180915260 + 90615891 90616164 L1PB2 3958 - 120 389 130566 63 1 0 20 7 5 71 1 0 62 1 0 7 5 6 35 chain 42125 chr5 180915260 + 90638722 90639229 SVA_B 1603 - 427 1290 66476 82 1 0 7 0 241 228 0 116 189 chain 126261 chr5 180915260 + 90642949 90644522 THE1B-int 1605 - 0 1605 29013 281 5 6 862 1 26 160 0 2 81 1 2 69 0 3 113 chain 6762 chr5 180915260 + 90701525 90701604 MER2 342 - 131 210 179232 79 chain 36969 chr5 180915260 + 90716061 90716516 L1PA5 6144 + 5708 6142 73555 359 18 1 67 4 0 7 chain 3489 chr5 180915260 + 90719852 90719893 MER66B 489 - 152 193 215537 41 chain 21647 chr5 180915260 + 90743984 90744410 L1PB1 5432 + 5022 5427 121584 69 2 0 12 5 4 7 1 0 24 2 1 5 1 0 14 5 1 8 2 0 52 3 2 16 2 1 42 1 0 16 14 1 21 0 14 14 2 0 24 1 0 19 3 2 13 1 0 14 1 0 5 1 0 4 chain 11736 chr5 180915260 + 90756381 90756539 Tigger3a 397 + 139 308 153323 9 0 10 104 7 8 38 chain 205648 chr5 180915260 + 90756799 90760013 L1PA14 3548 + 538 3465 18813 36 0 1 4 1 0 28 15 16 83 1 4 6 0 1 564 0 7 28 1 5 55 265 0 95 46 44 29 7 3 52 5 4 47 15 1 238 3 15 628 5 4 147 9 7 24 10 11 63 1 2 148 3 1 14 2 0 47 2 0 5 20 22 87 4 0 17 2 0 6 1 0 84 1 0 111 14 9 38 4 2 9 1 0 8 1 0 16 1 0 41 6 0 10 chain 13637 chr5 180915260 + 90792662 90792827 Tigger3a 397 - 83 258 145833 144 1 11 20 chain 8671 chr5 180915260 + 90804967 90805084 MER85 139 - 0 139 167353 36 1 12 32 0 11 48 chain 3079 chr5 180915260 + 90807077 90807112 L1PA6 6164 + 6119 6154 223349 35 chain 125304 chr5 180915260 + 90841495 90843081 L1PA7 6471 - 3 1582 29298 7 4 0 137 6 7 104 8 7 582 0 3 101 0 1 499 5 1 62 0 2 6 30 25 35 chain 519616 chr5 180915260 + 90851209 90857333 L1PA5 6144 + 0 6129 5200 120 0 14 292 1 0 10 9 5 728 9 0 672 1 2 217 0 1 1588 3 1 504 16 8 131 0 1 47 0 4 107 8 0 169 0 1 121 1 13 483 0 1 65 0 1 632 7 8 183 chain 320291 chr5 180915260 + 90859802 90866484 L1PB1 5432 + 1052 5427 12587 51 0 12 59 0 3 58 1 0 16 1 0 123 2301 0 21 5 0 8 0 7 42 0 3 13 4 5 243 0 1 141 1 2 351 1 4 284 1 2 13 3 5 321 6 5 270 0 1 84 5 6 267 1 3 53 0 1 198 0 8 89 0 1 93 5 0 179 11 10 50 1 0 118 0 1 227 1 0 110 49 41 150 0 1 52 0 1 202 1 2 35 9 8 8 1 0 23 1 0 9 1 0 11 19 13 50 2 1 15 1 0 45 1 0 15 2 0 6 1 0 11 24 14 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 8 1 0 11 1 0 4 chain 102983 chr5 180915260 + 90884733 90886084 MER57-int 2662 - 1241 2559 35993 17 1 0 49 0 7 6 1 2 27 0 1 619 4 0 53 0 1 77 6 7 136 22 0 3 17 0 103 2 0 97 2 3 104 0 1 5 chain 27464 chr5 180915260 + 90890249 90890673 MER57A1 433 - 0 429 94770 4 0 1 30 0 3 67 64 65 259 chain 68492 chr5 180915260 + 90915614 90916431 L1PA6 6164 + 5325 6148 49041 420 1 2 225 8 9 116 9 13 38 chain 22542 chr5 180915260 + 90944663 90944956 AluY 311 + 0 299 117834 49 11 16 67 0 1 166 chain 79290 chr5 180915260 + 90953176 90954284 MER11A 1151 + 0 1151 43916 76 1 9 145 1 0 64 0 11 11 37 0 72 0 1 22 0 1 272 7 6 120 0 26 26 9 6 9 0 35 173 7 6 20 5 9 31 chain 160195 chr5 180915260 + 90972673 90975202 L1PA11 4918 - 351 2525 23309 13 1 0 14 14 10 10 43 24 7 1 0 14 2 0 81 2 1 63 4 0 19 0 1 10 10 11 250 345 21 40 0 1 110 13 11 197 1 0 123 12 11 113 0 1 222 0 1 795 chain 10331 chr5 180915260 + 90985291 90985495 L1PB1 5432 - 28 213 158981 11 1 0 23 1 0 24 2 0 14 7 5 18 16 7 8 2 0 13 1 0 44 1 0 18 chain 68054 chr5 180915260 + 90991809 90992670 L1PB1 5432 - 954 1822 49223 280 2 1 83 1 2 375 4 11 116 chain 8099 chr5 180915260 + 90992679 90992770 L1PB1 5432 + 4507 4598 170490 91 chain 50634 chr5 180915260 + 90992772 90993617 L1PB1 5432 + 4601 5418 58552 26 2 0 90 0 2 86 11 11 165 0 3 119 13 11 32 1 0 12 4 0 11 3 1 50 2 1 15 1 0 44 1 0 10 59 45 11 2 0 24 1 0 17 7 6 10 2 1 14 chain 63940 chr5 180915260 + 91011357 91012277 L1PB 1623 - 48 941 51034 22 51 29 9 1 0 13 4 0 14 3 0 4 1 0 30 2 1 7 1 0 103 0 1 4 1 0 33 6 1 21 0 1 110 0 1 16 0 1 20 6 11 103 0 3 335 chain 6436 chr5 180915260 + 91012632 91012712 L1PB1 5432 + 4380 4460 181731 80 chain 7733 chr5 180915260 + 91012713 91012820 L1PB1 5432 + 4466 4576 172689 48 0 4 54 1 0 4 chain 45405 chr5 180915260 + 91012820 91013514 L1PB1 5432 + 4577 5275 62587 50 2 0 177 0 7 41 0 1 19 14 21 184 5 6 14 24 24 13 1 0 12 1 0 10 2 0 3 2 0 8 2 0 55 1 0 4 12 11 38 chain 6901 chr5 180915260 + 91013548 91013670 L1PB1 5432 + 5297 5411 178179 30 9 6 13 2 0 24 1 0 21 1 0 13 1 0 7 chain 3325 chr5 180915260 + 91031425 91031461 LTR25 836 - 388 424 218478 36 chain 34871 chr5 180915260 + 91040317 91040756 LTR7 482 + 0 469 76379 101 16 14 109 0 1 8 0 31 205 chain 319906 chr5 180915260 + 91043353 91047463 L1P3 4156 - 14 4141 12599 27 10 7 176 0 10 8 2 1 181 1 0 562 1 2 390 15 15 47 8 11 74 0 2 129 13 5 469 1 0 466 12 13 336 0 4 464 10 11 321 1 2 24 12 22 42 2 1 58 19 18 229 chain 542393 chr5 180915260 + 91057956 91063978 L1PA3long 6157 + 4 6155 2448 149 1 2 403 1 0 218 0 128 2171 1 2 3078 chain 17686 chr5 180915260 + 91079540 91079758 MER75 514 - 46 282 133734 126 0 18 92 chain 15571 chr5 180915260 + 91079758 91079934 L1PA4 6152 + 5967 6143 139666 176 chain 128833 chr5 180915260 + 91105429 91106854 L1PA3long 6157 - 0 1425 28354 1425 chain 125520 chr5 180915260 + 91117084 91118618 L1PA7 6471 - 6 1563 29237 6 4 0 327 0 1 63 6 0 57 1 0 7 0 10 95 0 1 122 0 1 154 6 0 92 0 1 123 9 37 266 2 0 194 chain 6791 chr5 180915260 + 91118618 91118696 L1PA7 6471 + 4804 4882 177086 78 chain 19681 chr5 180915260 + 91129246 91129494 L1PA8 5853 - 1 245 128158 92 1 0 19 2 1 48 1 0 12 1 0 72 chain 4153 chr5 180915260 + 91137494 91137539 MER5A 189 - 113 158 205205 45 chain 16684 chr5 180915260 + 91156956 91157160 L1PA8 5853 - 215 421 136453 30 2 0 44 1 0 19 0 5 108 chain 15072 chr5 180915260 + 91157160 91157383 L1PA8 5853 + 5630 5848 141105 51 1 0 13 17 15 33 2 1 17 1 0 88 chain 105490 chr5 180915260 + 91212912 91214294 LTR12C 1709 + 0 1709 35375 86 0 3 79 4 1 126 0 1 165 6 8 58 0 1 76 9 6 40 0 278 143 0 47 106 11 4 227 1 0 130 0 10 23 8 7 84 chain 42072 chr5 180915260 + 91234727 91235259 MER41A 554 - 14 554 66529 229 0 7 192 0 1 111 chain 81900 chr5 180915260 + 91240106 91241076 L1PA7 6471 + 5493 6469 42806 128 1 0 35 0 4 238 5 7 338 0 1 225 chain 45572 chr5 180915260 + 91266176 91266691 L1PA5 6144 - 12 527 62439 515 chain 18062 chr5 180915260 + 91266700 91266899 L1PA5 6144 + 5413 5612 132691 199 chain 4289 chr5 180915260 + 91284876 91284930 L1MC1 2226 + 1993 2047 203358 54 chain 8807 chr5 180915260 + 91290113 91290224 L1PA8 5853 - 0 110 166611 92 2 1 17 chain 95247 chr5 180915260 + 91324970 91326101 L1PA7 6471 + 5333 6462 38021 113 0 1 180 4 0 650 0 1 184 chain 14864 chr5 180915260 + 91335887 91336133 Tigger3a 397 - 31 343 141739 26 13 16 141 1 5 6 0 10 22 17 66 20 chain 4296 chr5 180915260 + 91340661 91340724 L1MD3 1191 - 141 202 203269 48 2 0 13 chain 49890 chr5 180915260 + 91349596 91350139 L1PA2 6032 - 835 1378 58894 543 chain 76802 chr5 180915260 + 91350139 91350974 L1PA2 6032 + 5197 6032 45082 835 chain 19266 chr5 180915260 + 91352672 91352893 L1PA5 6144 - 2 223 129331 221 chain 9576 chr5 180915260 + 91352915 91353020 L1PA5 6144 + 5811 5916 162713 105 chain 46103 chr5 180915260 + 91355108 91355857 L1MA2 4263 - 152 864 61941 6 7 0 47 7 0 93 2 1 155 65 62 85 1 0 75 13 12 90 16 0 29 2 1 56 chain 303747 chr5 180915260 + 91355942 91360560 HERVL-int 5654 + 1581 5654 13256 177 9 2 32 561 0 36 28 33 19 13 12 80 1 0 70 0 4 68 1 0 45 1 0 9 0 1 227 0 4 463 0 1 238 12 8 222 1 3 214 33 34 43 0 1 418 8 9 132 0 1 264 6 5 270 6 19 110 0 1 320 0 1 63 3 0 195 2 1 218 chain 43385 chr5 180915260 + 91356161 91356719 MER41A 554 + 0 554 64949 252 4 0 302 chain 173354 chr5 180915260 + 91371526 91373572 L1PA5 6144 - 9 2040 21671 138 0 1 184 3 0 460 0 1 456 11 12 261 9 4 189 10 0 325 chain 135244 chr5 180915260 + 91384417 91385939 L1PA4 6152 - 73 1605 26969 771 0 4 550 0 1 88 0 1 52 0 3 46 0 1 15 chain 12683 chr5 180915260 + 91403531 91403703 L1PA8 5853 + 5684 5853 149516 4 1 0 8 1 0 4 0 1 39 2 1 21 1 0 91 chain 57374 chr5 180915260 + 91461299 91461974 L1PA5 6144 - 2 677 54299 675 chain 71698 chr5 180915260 + 91461976 91462768 L1PA3long 6157 - 8 800 47605 792 chain 549644 chr5 180915260 + 91489294 91495312 L1PA2 6032 - 10 6032 1502 1158 0 1 1046 0 1 1712 0 1 924 0 1 79 0 1 842 2 1 255 chain 13599 chr5 180915260 + 91506124 91506301 LTR8 732 - 542 718 145978 55 1 0 121 chain 23843 chr5 180915260 + 91508115 91508479 THE1B 368 - 0 361 111231 78 3 0 115 4 3 4 1 0 56 24 22 45 0 5 12 0 1 14 2 0 6 chain 11716 chr5 180915260 + 91510821 91511025 L1PA13 3608 - 126 321 153398 16 1 0 18 8 4 50 9 6 25 1 0 4 1 2 22 1 0 48 chain 451870 chr5 180915260 + 91511450 91517080 HERVL-int 5654 + 0 5654 8702 553 7 6 5 0 1 84 8 0 106 0 1 82 1 0 132 7 8 145 1 2 642 9 10 303 6 15 72 0 3 14 17 13 451 0 2 44 0 2 327 24 23 206 0 5 149 4 6 145 0 1 346 0 1 221 0 1 58 5 6 637 15 19 23 3 0 5 0 3 76 0 3 697 chain 27238 chr5 180915260 + 91517080 91517467 MLT2A1 477 + 0 394 95471 142 0 1 16 11 20 15 1 2 189 4 0 9 chain 107769 chr5 180915260 + 91519701 91521165 THE1C-int 1605 - 9 1557 34785 415 0 1 58 7 8 300 2 3 59 6 0 65 0 1 183 1 6 44 7 14 41 0 14 36 45 51 120 0 54 75 chain 21919 chr5 180915260 + 91521214 91521585 THE1C 375 - 0 375 120549 26 1 0 145 32 35 44 6 7 27 20 21 70 chain 14295 chr5 180915260 + 91522502 91522721 L1PREC2 3366 - 521 732 143578 13 18 13 12 2 1 55 2 0 117 chain 34218 chr5 180915260 + 91551298 91551709 L1PA7 6471 - 22 441 77325 172 0 8 239 chain 48170 chr5 180915260 + 91554372 91554993 L1PA8 5853 - 6 844 60342 87 1 0 19 8 7 58 1 0 61 7 5 46 1 0 30 0 223 302 chain 81959 chr5 180915260 + 91554998 91555965 L1PA8 5853 + 4008 4981 42778 190 0 4 136 0 2 641 chain 169729 chr5 180915260 + 91567777 91569676 L1PA3long 6157 - 0 1894 22085 331 0 3 1241 8 0 319 chain 142524 chr5 180915260 + 91569676 91571250 L1PA3long 6157 + 2682 4257 25722 627 0 1 947 chain 144314 chr5 180915260 + 91577321 91578975 L1PA5 6144 + 4485 6144 25427 485 0 1 101 1 2 220 7 8 270 0 2 570 chain 549545 chr5 180915260 + 91592785 91598802 L1PA2 6032 - 3 6032 1510 849 0 1 4474 0 11 694 chain 22811 chr5 180915260 + 91686129 91686431 THE1B 368 + 55 356 116525 109 11 10 182 chain 30074 chr5 180915260 + 91692559 91692876 AluYb8 318 + 0 317 84586 317 chain 18177 chr5 180915260 + 91694198 91694502 L1PA16 3655 - 451 754 132391 98 9 8 15 5 4 34 14 15 40 7 8 60 1 0 21 chain 7873 chr5 180915260 + 91710415 91710514 LTR12C 1709 - 641 781 171855 30 0 41 69 chain 112767 chr5 180915260 + 91723313 91724578 L1PA4 6152 + 4888 6151 33456 159 3 0 105 0 1 998 chain 13206 chr5 180915260 + 91727070 91727508 L1MC1 2226 + 1787 2184 147434 36 34 31 26 14 8 29 1 0 32 34 31 13 2 0 48 61 49 13 38 26 6 1 0 13 5 4 32 chain 11895 chr5 180915260 + 91736347 91736479 L1PA5 6144 + 6005 6137 152623 132 chain 11931 chr5 180915260 + 91743097 91743251 MSTA-int 1630 + 1468 1624 152477 30 0 2 15 1 0 37 0 1 71 chain 405580 chr5 180915260 + 91772490 91777624 L1PA8A 6298 + 1138 6292 9923 84 1 2 6 2 0 115 0 1 21 0 1 941 0 1 199 0 1 247 1 5 188 2 0 286 0 5 100 0 1 11 3 2 35 0 1 7 9 1 7 0 1 6 0 4 32 0 2 429 0 6 427 0 1 29 2 1 147 1 0 123 7 0 138 0 1 72 9 8 26 2 3 91 0 1 18 1 0 4 0 1 5 11 29 442 0 1 30 1 0 632 9 1 175 chain 23383 chr5 180915260 + 91792495 91792789 AluY 311 + 11 299 113744 37 15 10 75 1 0 166 chain 50241 chr5 180915260 + 91833327 91833888 L1PA3long 6157 - 0 570 58839 147 1 8 182 0 2 231 chain 3572 chr5 180915260 + 91836898 91836956 MLT2F 649 + 587 646 214106 20 8 9 30 chain 8613 chr5 180915260 + 91849819 91849929 L1MB8 1703 + 962 1072 167663 110 chain 25878 chr5 180915260 + 91850470 91850881 LTR23 429 - 29 429 100534 121 2 0 6 11 8 94 1 0 54 34 30 75 1 0 12 chain 3125 chr5 180915260 + 91851593 91851627 MLT1H 522 - 377 411 222447 34 chain 65186 chr5 180915260 + 91877481 91878275 L1PA6 6164 + 5369 6161 50482 29 1 0 609 1 2 145 2 0 7 chain 26276 chr5 180915260 + 91882700 91883013 L1PA5 6144 + 5828 6144 98916 29 0 1 272 1 3 11 chain 13831 chr5 180915260 + 91892751 91892970 MER30 238 - 0 238 145125 80 40 59 99 chain 191679 chr5 180915260 + 91918837 91921013 L1PA5 6144 + 3963 6144 19895 5 0 2 381 0 2 747 0 1 70 1 0 568 0 1 404 chain 5914 chr5 180915260 + 91921451 91921518 L1PA2 6032 + 5965 6032 186054 67 chain 208810 chr5 180915260 + 91953208 91955990 L1PA8 5853 - 0 2819 18578 26 0 20 46 11 10 10 2 1 38 0 7 7 27 26 41 13 11 46 1 0 278 6 8 190 0 1 78 2 0 6 0 4 12 0 4 38 0 1 143 3 4 292 1 0 100 0 2 63 1 0 320 0 1 96 0 2 285 0 1 241 0 1 359 chain 69759 chr5 180915260 + 91956299 91957372 L1PA15 4387 - 267 1336 48486 16 1 0 172 1 0 10 0 1 23 82 99 78 0 3 189 50 21 91 1 2 171 0 8 16 1 0 52 2 0 117 chain 120639 chr5 180915260 + 91966854 91968295 LTR12C 1709 + 0 1709 30823 144 4 0 152 0 1 12 0 1 340 0 119 64 5 4 234 0 47 106 0 4 179 0 102 108 2 1 91 chain 29762 chr5 180915260 + 91990255 91990630 THE1C 375 - 0 373 85597 25 1 0 173 1 0 175 chain 14514 chr5 180915260 + 92011442 92011620 L1PA5 6144 + 5954 6139 142840 35 1 8 142 chain 73556 chr5 180915260 + 92027301 92028188 L1PA7 6471 + 5574 6465 46756 638 0 1 4 1 0 95 0 2 6 0 1 136 0 1 7 chain 23761 chr5 180915260 + 92058392 92058699 AluSp 311 + 4 302 111700 291 9 0 7 chain 104821 chr5 180915260 + 92072082 92073321 L1P3 4156 - 435 1680 35544 326 1 0 298 0 4 180 0 3 434 chain 44375 chr5 180915260 + 92077349 92077902 MER41A 554 - 0 554 63723 457 3 4 93 chain 8514 chr5 180915260 + 92111677 92111875 THE1D 372 - 110 309 168223 21 7 6 39 44 47 43 12 11 32 chain 22519 chr5 180915260 + 92119825 92120114 AluSc 308 + 11 293 117941 273 7 0 9 chain 29621 chr5 180915260 + 92159448 92159882 LTR7Y 441 + 0 441 86145 103 9 0 57 68 84 197 chain 293144 chr5 180915260 + 92159882 92163704 HERVH-int 3825 + 0 3825 13813 532 5 0 38 250 0 10 1 0 12 4 0 5 3 35 12 0 20 8 40 0 26 2 1 15 21 0 42 0 1 7 0 2 12 0 3 57 1 4 599 0 1 131 0 5 104 7 34 297 0 13 111 0 3 304 0 1 625 9 11 39 8 218 260 0 2 225 chain 7079 chr5 180915260 + 92160457 92160538 HERVH-int 3825 + 450 531 169388 81 chain 8633 chr5 180915260 + 92160568 92160665 HERVH-int 3825 + 436 533 167576 97 chain 30044 chr5 180915260 + 92164979 92165413 LTR7Y 441 + 0 441 84661 103 9 0 57 68 84 197 chain 271280 chr5 180915260 + 92166620 92170216 L1PA10 4194 - 33 3788 15121 11 1 0 34 3 0 224 0 1 179 14 17 615 0 5 290 2 6 41 17 0 30 1 0 4 0 1 15 11 15 16 1 0 33 12 14 273 1 3 119 0 1 55 0 4 124 10 16 41 1 4 71 0 2 83 1 6 48 1 0 570 4 146 560 11 9 69 chain 17950 chr5 180915260 + 92201804 92202045 AluSc 308 + 65 297 132981 13 2 0 156 2 0 38 1 0 14 4 0 11 chain 143247 chr5 180915260 + 92227591 92229158 L1PA3long 6157 - 0 1567 25608 1567 chain 58988 chr5 180915260 + 92229158 92229820 L1PA3long 6157 + 3934 4597 53404 423 0 4 125 3 0 111 chain 17923 chr5 180915260 + 92257173 92257410 AluSg 306 + 27 263 133052 167 12 11 58 chain 33028 chr5 180915260 + 92273275 92273659 L1PA4 6152 + 5760 6143 79170 137 0 1 105 2 0 140 chain 12619 chr5 180915260 + 92286735 92286948 L1MA4A 3247 - 2889 3095 149778 51 3 0 46 1 0 44 11 8 34 5 6 12 1 0 5 chain 25887 chr5 180915260 + 92307863 92308278 MSTA 426 - 0 426 100492 27 0 4 102 36 38 19 2 0 28 2 0 49 10 16 26 0 1 89 1 3 24 chain 4358 chr5 180915260 + 92384477 92384527 L1MB8 1703 + 812 862 202464 50 chain 21319 chr5 180915260 + 92391962 92392285 THE1B 368 - 19 368 122806 106 2 0 5 28 40 27 1 2 110 0 15 44 chain 210802 chr5 180915260 + 92429512 92431877 L1PA5 6144 - 4 2377 18448 145 0 1 503 1 2 188 0 4 1016 0 2 512 chain 20650 chr5 180915260 + 92434833 92435110 THE1D 372 - 6 288 125133 185 16 21 76 chain 8467 chr5 180915260 + 92441053 92441159 L1PA8 5853 - 0 105 168479 93 1 0 12 chain 7508 chr5 180915260 + 92447891 92448176 L1MB5 1630 + 1137 1435 174117 29 80 79 17 82 82 34 0 14 43 chain 6524 chr5 180915260 + 92451860 92451940 MER131 149 - 27 107 181060 80 chain 196594 chr5 180915260 + 92472917 92475131 L1PA4 6152 - 0 2226 19455 13 0 3 828 0 4 170 0 1 781 0 4 173 0 1 130 2 1 117 chain 112335 chr5 180915260 + 92484257 92485479 L1PA3long 6157 + 4931 6153 33579 1222 chain 23259 chr5 180915260 + 92493297 92493577 AluSg7 307 + 26 307 114392 102 1 2 177 chain 536591 chr5 180915260 + 92502265 92508389 L1PA5 6144 - 5 6144 3364 327 0 3 592 0 1 1387 0 1 112 0 1 435 0 1 84 0 1 756 2 0 891 0 3 159 0 1 155 1 0 28 7 10 164 1 0 278 0 1 523 0 1 166 0 2 56 chain 21000 chr5 180915260 + 92524102 92524394 L1PA8 5853 + 5565 5853 123919 44 2 0 70 1 0 8 2 0 6 0 2 8 0 1 36 2 1 19 1 0 93 chain 2921 chr5 180915260 + 92534370 92534405 L1MD2 1676 + 532 567 226656 35 chain 113453 chr5 180915260 + 92547252 92548552 L1PA5 6144 + 4837 6141 33237 385 1 0 587 0 3 265 0 2 62 chain 552751 chr5 180915260 + 92548851 92554882 L1PA2 6032 + 2 6032 1102 254 1 0 179 0 1 5213 1 0 383 chain 7097 chr5 180915260 + 92596446 92596527 L1PA5 6144 + 5880 5961 176773 81 chain 15251 chr5 180915260 + 92596528 92596706 L1PA5 6144 + 5961 6139 140626 178 chain 546060 chr5 180915260 + 92596747 92602763 L1PA3long 6157 + 4 6149 1938 148 0 1 588 1 0 36 1 129 3267 0 1 1975 chain 2623 chr5 180915260 + 92609266 92609314 MLT1G1 539 - 55 102 231395 16 8 7 24 chain 15086 chr5 180915260 + 92668872 92669123 Tigger3a 397 - 0 254 141070 44 19 20 46 5 6 87 7 8 43 chain 71419 chr5 180915260 + 92674210 92675025 L1PA5 6144 - 0 816 47739 141 0 1 674 chain 37137 chr5 180915260 + 92675030 92675450 L1P1 4361 + 3413 3833 73323 420 chain 29768 chr5 180915260 + 92677145 92677457 AluYb8 318 - 6 318 85582 312 chain 44124 chr5 180915260 + 92682421 92682943 L1PA5 6144 - 8 528 64047 221 0 1 235 4 1 62 chain 4809 chr5 180915260 + 92708173 92708232 Tigger6a 1079 - 0 59 197251 59 chain 70557 chr5 180915260 + 92710684 92711614 L1MA3 4352 + 2217 3139 48133 97 1 0 203 12 8 26 1 0 33 9 7 548 chain 400163 chr5 180915260 + 92724737 92730208 L1PB1 5432 - 8 5378 10092 4 1 0 16 1 0 13 1 0 21 1 0 17 67 53 4 1 0 14 2 1 40 5 4 16 2 1 53 2 0 9 16 11 9 1 0 24 125 14 75 0 1 27 4 3 112 0 8 167 0 2 79 2 0 5 1 0 12 9 13 684 0 9 89 0 2 77 22 14 14 0 1 767 0 4 104 7 5 206 9 10 530 0 15 150 0 1 443 3 0 22 54 39 15 1 0 5 0 1 141 0 4 199 0 1 159 5 22 266 3 5 428 7 0 6 0 7 97 chain 27201 chr5 180915260 + 92775004 92775299 AluYf4 310 - 15 310 95595 295 chain 513979 chr5 180915260 + 92777782 92783911 L1PA6 6164 + 0 6161 5777 194 7 8 307 2 1 429 0 25 488 1 0 873 0 2 863 0 1 78 0 1 7 0 3 250 4 1 938 4 3 843 1 0 353 0 1 36 0 8 77 3 0 371 chain 70436 chr5 180915260 + 92792379 92793284 LTR5_Hs 974 - 90 974 48192 91 0 3 5 14 11 13 20 1 45 0 2 104 8 1 45 1 0 101 0 4 458 chain 21727 chr5 180915260 + 92793378 92793658 HERVK-int 6823 - 1113 1390 121297 74 4 0 86 0 3 19 1 0 14 1 0 81 chain 8154 chr5 180915260 + 92793766 92793904 LTR5_Hs 974 - 0 143 170204 41 25 24 12 0 6 60 chain 123329 chr5 180915260 + 92798192 92799763 THE1B-int 1605 + 0 1605 29938 8 0 1 200 1 5 86 13 14 116 0 25 495 3 4 114 0 1 162 0 1 373 chain 88975 chr5 180915260 + 92800759 92801788 L1PA6 6164 + 5132 6162 40016 407 0 1 220 0 1 386 1 0 15 chain 114045 chr5 180915260 + 92803387 92804702 L1PA6 6164 - 2 1348 33087 135 1 0 4 0 20 169 0 3 294 0 3 25 0 2 191 0 4 496 chain 531322 chr5 180915260 + 92817859 92824957 L1PA7 6471 + 0 6469 4040 161 0 1 649 1 5 330 0 2 1493 10 0 67 1 0 392 6 10 225 7 8 164 639 0 38 1 5 40 0 1 242 2 0 170 1 0 111 0 1 559 0 4 430 0 2 310 1 3 201 1 0 25 3 2 34 2 0 78 4 0 517 0 1 115 4 10 43 1 2 8 2 0 10 chain 56017 chr5 180915260 + 92821371 92821978 L1PA3long 6157 + 5549 6156 55112 607 chain 3478 chr5 180915260 + 92826569 92826667 HAL1-2a_MD 234 - 136 198 215693 18 39 0 20 4 7 17 chain 27961 chr5 180915260 + 92840219 92840575 THE1A 353 - 1 353 93133 58 8 5 178 1 0 111 chain 122067 chr5 180915260 + 92840579 92842157 THE1A-int 1579 - 11 1579 30362 6 7 0 292 0 11 113 5 4 67 0 1 408 0 1 67 13 0 100 1 0 17 29 27 277 6 7 170 chain 24918 chr5 180915260 + 92842157 92842527 THE1A 353 - 0 353 105231 169 30 13 57 6 5 26 0 1 82 chain 22933 chr5 180915260 + 92856695 92857121 L1PA14 3548 + 3036 3452 115949 27 5 6 34 19 15 13 2 0 6 1 0 84 1 0 111 1 0 10 74 72 38 chain 451775 chr5 180915260 + 92858881 92864748 L1PA8 5853 + 50 5850 8708 22 2 0 10 1 0 6 64 25 192 0 4 86 15 13 5 1 0 1425 8 5 62 0 2 119 1 0 91 1 0 184 0 1 29 1 2 104 5 8 424 1 2 178 0 2 25 0 1 54 3 11 252 1 0 642 1 3 5 2 0 12 3 5 273 1 0 500 10 11 98 4 0 67 2 0 114 48 0 18 6 5 97 1 2 276 0 1 41 1 0 44 3 1 64 14 13 50 0 17 7 1 0 90 chain 6297 chr5 180915260 + 92875033 92875253 L1MA6 2487 + 2237 2404 182819 28 13 11 15 98 51 37 3 0 17 1 0 8 chain 32531 chr5 180915260 + 92885459 92885831 L1PA7 6471 + 6099 6470 79972 205 1 0 166 chain 23403 chr5 180915260 + 92988953 92989247 AluYk4 311 + 21 311 113633 111 20 16 163 chain 13507 chr5 180915260 + 92997259 92997448 MER30 238 - 0 201 146336 46 3 0 66 4 19 70 chain 16771 chr5 180915260 + 93000138 93000341 AluY 311 + 83 287 136193 43 0 1 160 chain 520633 chr5 180915260 + 93025509 93031887 L1PA7 6471 + 44 6456 5091 113 1 0 4 0 1 6 10 13 162 7 8 55 1 2 580 1 2 18 0 1 58 0 12 134 0 4 4 0 10 11 0 2 9 0 1 6 0 2 6 8 6 636 0 1 132 1 2 68 0 1 307 1 0 199 27 8 7 1 0 340 5 1 527 1 0 333 3 0 141 0 17 11 1 0 195 2 1 136 0 4 146 0 1 1101 4 5 27 4 7 828 chain 143356 chr5 180915260 + 93092241 93096727 L1PB1 5432 + 113 4587 10843 26 0 2 167 2 1 82 12 10 182 1 2 28 1 0 4 0 1 9 5 4 347 6 5 158 1 0 67 10 14 25 0 4 144 1 0 7 62 47 153 0 1 491 0 3 188 5 4 136 11 11 49 12 8 326 0 1 175 1 0 85 1 2 361 1 2 287 1 0 4 2 1 140 2 1 581 5 6 122 chain 535396 chr5 180915260 + 93096776 93102897 L1PA4 6152 + 0 6143 3538 868 0 4 217 0 1 119 1 0 4 0 1 739 1 6 732 1 0 802 0 4 213 0 1 902 0 8 1522 chain 36590 chr5 180915260 + 93102897 93104042 L1PB1 5432 + 4623 5420 10843 6 0 1 167 1 0 6 0 1 70 0 8 132 11 14 18 0 1 5 2 1 34 1 5 11 3 0 12 7 0 23 1 0 11 337 10 8 2 0 49 6 5 16 1 0 42 2 1 16 1 0 4 21 9 18 8 5 14 2 0 24 2 1 20 1 0 13 1 0 16 chain 201174 chr5 180915260 + 93105947 93108172 L1PA3long 6157 + 3929 6157 19126 428 1 5 343 2 1 1451 chain 18316 chr5 180915260 + 93112820 93113024 L1PA3long 6157 + 5953 6157 132035 204 chain 28364 chr5 180915260 + 93128228 93128566 L1PA3long 6157 + 5838 6157 91718 75 20 0 101 0 1 142 chain 28604 chr5 180915260 + 93154611 93154911 AluYg6 310 + 0 300 90717 300 chain 162908 chr5 180915260 + 93162311 93164134 L1PA4 6152 - 9 1837 22949 1344 0 6 164 1 0 314 chain 33528 chr5 180915260 + 93166417 93166900 MER1A 529 - 0 499 78352 54 18 21 56 0 11 290 18 17 11 4 7 32 chain 551487 chr5 180915260 + 93187161 93193642 L1PA3long 6157 - 0 6157 1254 1486 1 0 36 1 0 945 0 1 396 0 1 75 0 1 313 2 0 1074 331 3 112 0 5 1709 chain 26469 chr5 180915260 + 93191490 93191815 L1P1 4361 + 949 1274 97835 325 chain 21058 chr5 180915260 + 93203145 93203389 AluSc 308 - 32 276 123697 244 chain 26287 chr5 180915260 + 93205302 93205696 LTR7B 505 + 62 498 98871 46 0 10 57 0 38 12 3 27 12 30 0 14 0 2 85 1 0 76 14 13 44 chain 24977 chr5 180915260 + 93261835 93262137 AluSp 311 - 13 311 104919 178 5 0 8 1 2 110 chain 24353 chr5 180915260 + 93266538 93266878 L1PA8 5853 - 0 335 108356 92 2 1 19 2 1 47 8 9 5 1 0 69 2 0 46 1 0 46 chain 77798 chr5 180915260 + 93268604 93269519 L1PA7 6471 + 5558 6466 44616 63 1 0 833 6 0 12 chain 11549 chr5 180915260 + 93270614 93270869 L1PB1 5432 + 5144 5366 154103 12 2 0 3 2 0 9 2 0 51 3 2 15 1 0 45 1 0 15 1 0 4 26 8 18 12 9 11 7 5 15 chain 113642 chr5 180915260 + 93283238 93284482 L1PA3long 6157 - 15 1267 33191 400 0 4 424 0 4 420 chain 39665 chr5 180915260 + 93285318 93286092 L1MA3 4352 - 96 783 69801 31 0 4 42 116 94 47 91 25 305 2 0 6 19 18 115 chain 126319 chr5 180915260 + 93321108 93322730 SVA_B 1603 + 0 1597 29002 10 13 0 10 15 0 19 4 33 555 6 7 37 0 3 77 80 0 141 0 43 12 0 1 41 1 4 16 1 0 154 3 7 427 chain 6476 chr5 180915260 + 93349180 93349259 LTR45C 530 - 439 522 181425 16 0 4 63 chain 24115 chr5 180915260 + 93353510 93353842 THE1A 353 + 0 330 109667 112 1 0 88 1 0 32 0 3 6 4 1 51 3 4 5 1 0 28 chain 30426 chr5 180915260 + 93355668 93356067 L1PA7 6471 + 6009 6397 83641 84 0 1 157 8 0 25 9 5 4 1 0 38 0 1 73 chain 2125 chr5 180915260 + 93356110 93356142 L1PA7 6471 + 6440 6468 237413 21 4 0 7 chain 7949 chr5 180915260 + 93356654 93356749 L1PA7 6471 + 6367 6462 171332 95 chain 8513 chr5 180915260 + 93362680 93362790 LTR40c 466 - 12 128 168231 83 0 6 27 chain 33061 chr5 180915260 + 93371296 93371709 L1PA7 6471 + 6048 6456 79115 85 3 0 181 15 13 129 chain 43948 chr5 180915260 + 93374895 93375447 MER41A 554 + 0 554 64267 230 0 3 40 1 0 281 chain 44287 chr5 180915260 + 93380281 93381114 MER41A 554 + 0 548 63837 206 0 1 85 286 0 256 chain 27897 chr5 180915260 + 93433091 93433445 THE1B 368 + 0 368 93380 44 0 15 113 2 1 195 chain 89004 chr5 180915260 + 93435360 93436725 L1PA14 3548 + 2126 3475 40005 46 19 30 81 5 8 61 0 1 130 7 9 43 2 1 147 7 8 89 2 0 153 7 6 13 3 1 48 11 7 106 4 0 17 2 0 6 1 0 84 1 0 40 0 1 70 14 9 38 4 2 11 6 4 18 1 0 41 6 0 10 1 0 10 chain 8978 chr5 180915260 + 93457724 93457837 MSTA-int 1630 - 0 113 165727 9 0 1 62 1 0 41 chain 26427 chr5 180915260 + 93461997 93462299 AluYa5 310 - 13 310 98315 8 13 0 8 0 8 273 chain 514951 chr5 180915260 + 93467835 93474286 L1PA6 6164 - 2 6163 5676 8 2 0 367 333 0 45 2 1 372 1 2 21 3 2 380 0 1 105 5 4 695 0 1 51 3 4 195 0 2 201 0 3 195 1 5 50 0 3 259 0 1 241 0 1 621 0 1 90 1 0 21 0 2 376 2 1 90 0 1 661 11 12 194 0 10 43 0 17 607 1 0 4 1 2 193 chain 294370 chr5 180915260 + 93474288 93478298 L1PB1 5432 - 36 4004 13743 4 1 0 22 1 0 24 29 24 14 24 12 16 1 0 44 1 0 68 2 0 9 2 0 3 2 0 12 1 0 6 1 0 20 6 1 10 1 4 264 0 1 215 3 0 177 4 1 453 0 1 146 5 0 355 4 0 7 7 11 630 2 0 61 5 12 275 5 0 219 3 0 5 0 3 166 3 5 221 0 1 170 13 8 268 chain 10721 chr5 180915260 + 93479234 93479388 L1MA4A 3247 - 119 269 157316 21 1 0 123 3 0 6 chain 141003 chr5 180915260 + 93482033 93484176 L1MA1 4479 + 1746 4152 25985 191 12 8 51 0 6 87 2 0 43 4 5 30 1 0 19 0 4 109 21 27 144 0 1 110 12 308 46 1 0 50 2 0 176 3 0 90 1 0 12 5 0 49 6 0 44 47 44 119 8 6 101 0 2 23 1 0 34 1 2 28 1 0 24 2 0 16 5 6 65 1 0 20 2 0 16 1 0 58 1 13 13 27 4 5 2 0 119 5 4 29 2 0 35 1 0 10 chain 30171 chr5 180915260 + 93486840 93487156 AluYb8 318 + 0 316 84270 316 chain 29274 chr5 180915260 + 93500454 93500885 L1MA1 4479 + 3758 4172 87672 68 1 0 14 2 0 19 1 0 23 1 0 64 1 0 6 3 0 126 1 0 28 3 1 35 2 1 8 1 0 4 4 1 16 chain 20658 chr5 180915260 + 93505760 93506032 AluY 311 + 38 311 125114 94 11 12 167 chain 20251 chr5 180915260 + 93534174 93534473 L1PA8 5853 + 5564 5852 126377 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 23 0 3 20 19 11 35 chain 96796 chr5 180915260 + 93561535 93563677 L1PA6 6164 + 4970 6162 37616 120 0 1 228 1 0 329 2 1 133 957 0 44 0 1 176 2 1 51 1 9 98 chain 82165 chr5 180915260 + 93562364 93563262 L1PA3long 6157 + 5259 6157 42698 898 chain 26974 chr5 180915260 + 93569789 93570102 AluY 311 + 0 309 96358 123 8 4 182 chain 68400 chr5 180915260 + 93606818 93608202 L1MA3 4352 + 3063 4352 49089 4 1 0 48 0 12 213 0 3 44 1 0 9 6 7 26 305 255 342 25 5 24 0 2 6 1 0 30 37 13 7 3 0 122 4 0 25 2 0 16 14 12 29 1 0 11 6 2 22 chain 79424 chr5 180915260 + 93612955 93613940 L1PA8 5853 + 4837 5810 43861 173 2 0 72 0 2 185 7 0 147 0 1 103 7 8 36 1 0 46 2 0 67 6 5 6 1 0 52 2 1 19 1 0 50 chain 527894 chr5 180915260 + 93625850 93632554 L1PA7 6471 - 10 6466 4413 361 0 1 340 0 1 144 1 0 132 3 9 90 0 15 172 1 0 58 0 1 157 0 1 231 0 1 218 0 4 300 0 1 176 21 13 210 8 12 402 0 1 742 2 1 27 15 0 485 292 0 206 0 1 95 4 5 469 0 1 520 7 25 126 8 9 194 1 4 198 0 1 129 18 12 6 0 6 54 0 8 81 chain 118858 chr5 180915260 + 93667933 93669429 L1PA7 6471 - 2 1497 31469 10 2 0 136 5 6 8 0 1 156 0 1 157 9 4 189 12 16 170 1 0 344 6 5 35 0 1 256 chain 31649 chr5 180915260 + 93669429 93669798 L1PA7 6471 + 4583 4951 80998 165 1 0 203 chain 52516 chr5 180915260 + 93671966 93672586 L1PA7 6471 - 1 619 57292 56 1 0 106 2 1 455 chain 10952 chr5 180915260 + 93675826 93676039 MER2 342 - 14 255 156391 25 7 8 12 42 68 105 0 1 22 chain 40078 chr5 180915260 + 93681423 93681883 LTR2 463 - 0 463 69215 181 0 1 130 0 1 116 0 1 33 chain 397915 chr5 180915260 + 93683136 93688772 L1PB1 5432 + 80 5424 10174 70 15 16 185 0 2 5 0 8 515 1 2 5 1 0 190 1 0 148 146 7 10 1 2 150 1 0 7 2 0 5 15 11 183 0 5 328 0 13 499 0 1 48 1 2 13 0 1 226 2 1 104 1 0 342 0 2 78 1 2 143 140 0 61 1 0 58 4 1 195 28 13 421 0 14 208 1 0 131 1 10 105 3 0 163 13 5 10 3 11 164 1 0 4 0 1 62 0 1 5 1 0 50 24 16 20 1 0 9 16 11 9 2 0 53 2 1 9 8 7 43 1 0 16 1 0 4 2 0 13 13 4 10 8 5 14 2 0 24 1 0 21 1 0 29 1 0 4 chain 6563 chr5 180915260 + 93684334 93684415 L1PB1 5432 + 1626 1707 180759 81 chain 60636 chr5 180915260 + 93690503 93691278 MER4E1 777 - 2 777 52499 217 22 19 60 0 1 334 9 10 109 0 1 24 chain 38843 chr5 180915260 + 93702403 93702920 LTR10C 591 - 0 591 70957 33 1 0 48 5 7 201 0 1 122 1 73 106 chain 23112 chr5 180915260 + 93702939 93703213 AluSq2 311 + 20 294 115084 274 chain 115913 chr5 180915260 + 93707441 93709026 THE1C-int 1605 - 0 1605 32492 147 3 4 428 0 13 83 0 1 50 0 1 36 0 1 24 0 1 51 12 6 68 32 33 113 10 11 78 4 11 94 4 5 325 7 5 16 chain 21647 chr5 180915260 + 93709136 93709438 THE1C 375 - 49 367 121585 119 28 28 108 0 16 47 chain 97241 chr5 180915260 + 93714122 93715546 L1PA15 4387 - 42 1451 37501 16 5 0 13 2 0 46 6 3 31 2 1 18 1 0 10 4 0 22 1 0 54 1 0 25 7 6 84 0 2 82 4 3 35 6 4 11 0 1 49 4 0 17 2 0 178 2 3 239 0 3 83 0 1 83 0 1 8 1 0 4 0 1 40 2 7 122 0 2 7 7 6 53 2 0 35 chain 3229 chr5 180915260 + 93748494 93748528 MER8 282 + 1 35 220429 34 chain 6232 chr5 180915260 + 93767926 93768042 MER5A1 166 + 29 132 183308 7 3 0 27 16 7 42 1 0 20 chain 10847 chr5 180915260 + 93780569 93780711 THE1D 372 - 0 148 156799 60 0 5 22 1 2 59 chain 4409 chr5 180915260 + 93833416 93833471 MER5A 189 - 9 64 201819 55 chain 27090 chr5 180915260 + 93852226 93852520 AluYd8 298 + 0 295 95971 199 1 2 94 chain 6820 chr5 180915260 + 93870815 93870928 MER67C 710 + 3 115 178796 58 19 18 36 chain 40126 chr5 180915260 + 93874636 93875147 MER41A 554 + 13 548 69144 184 2 3 28 4 5 22 1 21 202 0 2 68 chain 19769 chr5 180915260 + 93878536 93878864 PABL_A-int 1935 + 1399 1713 127912 24 22 12 4 0 1 80 6 4 29 7 5 42 6 5 108 chain 12451 chr5 180915260 + 93879257 93879400 MER41-int 2638 + 2476 2619 150459 143 chain 31250 chr5 180915260 + 93879453 93879846 MER41A 554 + 158 553 82083 70 0 1 53 11 12 259 chain 49479 chr5 180915260 + 93882389 93884614 L1M1 2793 + 790 2695 59404 12 1 0 23 11 9 5 1 0 35 48 29 97 0 3 103 0 4 56 20 19 65 4 0 19 4 0 7 3 0 6 8 9 54 0 7 7 1 3 23 23 21 114 1331 1034 75 1 0 44 1 0 12 1 0 10 chain 15382 chr5 180915260 + 93885708 93885906 L1MA3 4352 + 3835 4033 140253 198 chain 24846 chr5 180915260 + 93886272 93886562 AluY 311 + 7 298 105643 125 0 1 165 chain 60037 chr5 180915260 + 93893223 93894000 LTR17 781 + 0 781 52804 244 0 1 82 1 0 32 42 43 135 0 3 241 chain 7874 chr5 180915260 + 93900414 93900526 MER57B2 428 - 300 420 171850 71 4 12 37 chain 56743 chr5 180915260 + 93908601 93909683 MER4E1 777 - 6 777 54689 221 2 0 7 2 0 6 4 1 34 0 1 97 341 27 162 0 1 68 0 1 16 0 4 82 0 4 22 1 0 17 chain 497344 chr5 180915260 + 93918757 93924866 L1PA6 6164 + 0 6158 6993 164 16 33 252 19 0 120 1 0 228 0 17 85 12 8 1367 0 2 652 0 1 294 0 1 258 4 0 13 0 2 1007 3 1 299 0 2 178 6 7 69 4 5 250 2 7 482 1 0 4 0 19 229 1 14 83 1 0 5 chain 25942 chr5 180915260 + 93927769 93928088 THE1B-int 1605 - 5 325 100244 53 0 1 266 chain 10479 chr5 180915260 + 93942486 93942736 MSTB 430 - 75 355 158341 25 12 15 59 59 69 27 17 34 51 chain 23736 chr5 180915260 + 93960619 93960914 AluY 311 + 10 299 111854 121 7 0 12 2 0 7 0 3 146 chain 27571 chr5 180915260 + 94017205 94017513 L1PA3long 6157 - 1 309 94431 308 chain 71854 chr5 180915260 + 94052874 94053797 L1PA10 4194 + 3228 4161 47538 69 0 1 39 0 2 62 0 2 284 19 22 38 2 1 197 0 4 94 0 3 70 3 0 34 1 0 11 chain 23692 chr5 180915260 + 94055563 94055838 AluSp 311 + 11 290 112070 80 0 3 183 0 1 12 chain 5272 chr5 180915260 + 94066954 94067014 MER30B 195 + 132 192 192307 60 chain 11990 chr5 180915260 + 94067971 94068146 MER30 238 + 48 238 152248 32 1 0 20 8 0 11 1 25 102 chain 20664 chr5 180915260 + 94087562 94087812 L1PA3long 6157 + 5896 6149 125092 107 7 0 9 1 8 120 0 3 6 chain 6691 chr5 180915260 + 94094072 94094157 FRAM 166 + 68 151 179745 78 2 0 5 chain 35616 chr5 180915260 + 94101955 94102388 L1PA5 6144 + 5711 6144 75390 215 0 1 104 1 0 46 1 2 52 3 2 11 chain 22164 chr5 180915260 + 94109259 94109589 THE1B 368 - 0 334 119526 134 3 2 18 1 5 9 9 10 21 1 0 57 6 7 71 chain 523327 chr5 180915260 + 94157771 94165129 L1PA7 6471 - 5 6468 4833 184 0 1 422 0 3 231 0 7 73 1 2 265 0 1 78 0 4 207 2 0 7 5 7 686 0 1 243 0 8 142 1 0 393 1 0 333 7 6 395 44 0 70 1 2 13 861 0 41 25 0 165 2 3 42 0 1 535 1 5 154 6 7 260 0 7 26 0 1 138 0 1 71 0 1 54 0 7 274 2 1 233 0 9 35 17 16 73 0 6 111 26 0 402 chain 2829 chr5 180915260 + 94165159 94165189 MADE1 96 - 66 96 228239 30 chain 40471 chr5 180915260 + 94180657 94182066 L1PA15 4387 + 3648 4356 68636 132 6 5 28 5 7 15 715 26 19 4 10 43 1 0 167 10 9 22 11 9 45 1 0 27 4 0 5 1 0 50 6 3 44 35 29 13 chain 8143 chr5 180915260 + 94289316 94289434 L1PB4 2604 + 2216 2335 170274 66 6 7 46 chain 520980 chr5 180915260 + 94290673 94297130 L1PA7 6471 + 3 6468 5059 168 3 0 159 15 16 58 1 2 271 31 32 341 1 12 6 11 0 92 0 2 13 0 1 48 0 1 26 1 0 20 9 10 68 2 1 400 4 3 133 0 3 646 4 9 92 4 0 51 11 8 368 0 2 458 0 1 113 2 0 199 0 1 58 1 0 590 0 1 92 0 1 1031 4 7 122 41 36 617 0 5 4 0 1 57 2 0 9 chain 16540 chr5 180915260 + 94298226 94298568 L1PB1 5432 + 5114 5427 136813 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 45 1 0 11 17 5 29 3 1 5 1 0 14 7 9 15 1 0 11 4 4 6 1 0 13 1 0 18 2 0 5 chain 42218 chr5 180915260 + 94330325 94330872 MLT2A2 560 + 0 559 66379 183 1 0 192 0 1 23 3 14 77 3 4 65 chain 120283 chr5 180915260 + 94336974 94338560 THE1C-int 1605 + 0 1592 30947 18 1 0 162 8 8 251 12 19 66 5 4 77 0 1 148 13 7 60 9 16 548 1 0 207 chain 25018 chr5 180915260 + 94342652 94343008 THE1C 375 - 0 375 104693 26 1 0 70 0 12 63 2 0 5 6 9 43 0 4 72 8 11 60 chain 4702 chr5 180915260 + 94345179 94345377 MER53 195 - 0 187 198503 17 125 114 56 chain 53392 chr5 180915260 + 94349999 94350933 Tigger1 2417 + 1597 2400 56765 66 7 0 86 6 5 30 21 21 80 137 28 295 2 0 26 1 0 16 0 3 9 14 0 9 0 1 22 10 9 97 chain 29161 chr5 180915260 + 94397128 94397438 AluYa5 310 - 0 310 88250 310 chain 169306 chr5 180915260 + 94434139 94435987 L1PA3long 6157 + 4309 6157 22142 1848 chain 57645 chr5 180915260 + 94455930 94456697 L1MA3 4352 + 1625 2391 54161 26 1 0 604 1 2 56 1 0 78 chain 30342 chr5 180915260 + 94471119 94471538 MLT2A1 477 + 0 477 83805 127 1 24 18 0 4 150 1 0 62 4 0 8 7 43 41 chain 5718 chr5 180915260 + 94500268 94500448 MER53 195 - 36 181 187947 33 0 1 7 93 57 47 chain 481636 chr5 180915260 + 94502625 94508154 L1PA5 6144 - 0 5546 7667 11 1 4 172 0 4 81 0 4 580 1 14 111 0 1 654 4 0 155 0 2 57 0 1 344 0 2 548 0 1 201 0 1 85 17 1 523 0 1 1190 0 1 279 0 1 247 0 2 268 chain 4194 chr5 180915260 + 94512900 94512948 MLT2D 439 - 69 117 204637 48 chain 138668 chr5 180915260 + 94514126 94515973 L1PBa 3878 + 193 2147 26370 19 1 0 21 3 1 28 7 84 39 1 0 138 1 0 110 0 8 7 8 0 332 0 1 68 4 1 263 0 3 32 3 4 13 0 1 97 1 0 151 1 0 5 2 0 63 0 38 13 0 1 154 2 1 102 2 0 156 chain 21604 chr5 180915260 + 94519619 94519862 L1PA7 6471 + 6218 6461 121756 243 chain 27021 chr5 180915260 + 94522617 94523007 L1MA2 4263 + 3724 4102 96212 85 3 0 88 2 1 58 2 1 9 1 0 92 7 0 11 0 1 32 chain 189796 chr5 180915260 + 94545476 94547640 L1PA4 6152 - 3103 5265 20072 305 4 1 149 0 1 1545 1 0 8 0 1 152 chain 273562 chr5 180915260 + 94547640 94550717 L1PA4 6152 + 3057 6140 14995 332 0 4 915 0 2 5 1 0 1723 0 1 101 chain 8921 chr5 180915260 + 94566309 94566425 MER85 139 - 8 134 166024 32 1 11 83 chain 379592 chr5 180915260 + 94579941 94585868 L1PA6 6164 + 28 6161 10767 421 24 16 102 1 0 106 18 35 87 1 18 88 0 4 46 0 6 42 6 0 256 0 1 189 4 1 381 0 2 111 0 1 277 0 24 92 7 0 255 1212 1345 17 0 9 402 0 4 422 0 1 57 0 7 454 2 1 6 0 6 224 0 1 448 18 0 8 0 18 128 1 0 14 chain 103651 chr5 180915260 + 94582455 94583667 L1PA6 6164 - 2360 3574 35676 317 1 2 57 1 0 296 0 1 25 0 1 515 chain 44292 chr5 180915260 + 94595881 94596503 LTR66 600 + 0 600 63831 45 0 1 120 0 1 246 38 0 27 19 0 16 1 34 110 chain 15781 chr5 180915260 + 94662270 94662493 MER30 238 - 1 238 139014 18 1 0 20 3 0 59 14 32 108 chain 323075 chr5 180915260 + 94673335 94677069 L1P2 5180 + 1440 5178 12478 1155 0 6 475 0 1 112 1 0 506 1 0 464 7 7 156 1 3 765 1 0 45 1 0 39 1 0 4 chain 53153 chr5 180915260 + 94678375 94678969 L1PA4 6152 - 13 608 56922 42 0 1 552 chain 94221 chr5 180915260 + 94691351 94692463 L1PA5 6144 - 6 1129 38290 12 1 0 102 0 2 77 0 2 57 0 1 389 0 8 140 0 1 4 4 3 149 1 0 176 chain 405507 chr5 180915260 + 94695755 94701127 L1PB1 5432 - 12 5397 9928 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 14 1 16 1 0 44 6 5 10 2 1 50 2 0 9 19 14 30 19 0 9 123 165 127 15 4 183 1 3 111 0 1 336 7 8 203 6 5 230 2 4 17 0 1 63 2 0 15 0 3 51 0 3 219 1 4 395 0 1 224 0 1 4 1 0 230 30 16 284 1 5 274 0 4 75 0 5 119 0 2 272 1 11 33 13 0 11 1 2 228 0 2 563 0 4 41 0 1 61 0 3 97 0 6 229 0 3 111 chain 19384 chr5 180915260 + 94712221 94712523 THE1C 375 - 0 375 128994 29 0 11 7 0 1 85 35 45 15 0 1 23 1 51 107 chain 73974 chr5 180915260 + 94727347 94728215 L1PA7 6471 + 5594 6467 46528 29 0 4 66 0 2 189 0 1 268 1 0 167 0 1 138 2 0 8 chain 9378 chr5 180915260 + 94744634 94744792 MER33 330 + 17 174 163660 59 3 0 42 5 6 26 9 10 14 chain 21276 chr5 180915260 + 94768829 94769206 THE1C 375 - 0 375 122941 25 1 0 31 9 4 48 40 47 87 27 24 109 chain 23783 chr5 180915260 + 94795598 94795878 AluYc3 301 + 8 288 111578 105 1 2 27 0 1 130 2 0 15 chain 5602 chr5 180915260 + 94803103 94803170 Tigger4b 360 - 293 360 189066 67 chain 10149 chr5 180915260 + 94815233 94815379 MER44A 345 + 103 256 159854 55 3 13 6 0 1 56 4 0 22 chain 32120 chr5 180915260 + 94822623 94823053 MLT2A1 477 + 0 477 80652 142 0 1 26 1 5 211 1 40 34 1 0 8 0 4 6 chain 28963 chr5 180915260 + 94828058 94828370 AluYa5 310 + 0 310 89166 132 1 0 164 1 0 14 chain 41651 chr5 180915260 + 94845909 94846578 LTR8 732 + 16 724 67088 16 21 34 90 1 0 55 11 10 36 0 3 82 0 33 88 7 9 55 24 18 21 24 20 138 chain 42072 chr5 180915260 + 94854090 94854774 L1MA5A 2387 - 95 747 66528 31 0 1 22 33 6 17 3 0 27 4 1 23 8 6 51 1 0 38 1 0 28 1 3 5 3 0 241 7 9 11 26 29 103 chain 27192 chr5 180915260 + 94871011 94871313 AluYk4 311 - 6 311 95620 27 0 3 275 chain 23002 chr5 180915260 + 94874914 94875265 L1PB2 3958 + 3330 3670 115610 33 1 0 8 3 0 6 4 1 61 6 4 8 2 0 94 2 3 69 1 0 53 chain 5361 chr5 180915260 + 94908622 94908716 MER20 218 + 38 136 191421 34 20 24 40 chain 151849 chr5 180915260 + 94909482 94911893 L1MA3 4352 - 44 2409 24359 20 43 39 4 1 0 43 0 2 21 1 0 6 0 3 44 92 90 4 0 1 225 1 0 83 3 6 172 0 5 159 8 7 74 0 1 23 23 21 190 8 9 174 1 0 115 49 15 25 7 12 126 1 0 14 0 1 76 0 6 8 41 12 99 1 5 48 10 9 68 7 12 126 11 15 38 18 9 100 chain 49913 chr5 180915260 + 94920724 94921504 L1PB1 5432 + 4654 5422 59080 140 0 8 114 1 5 182 15 15 17 2 0 12 15 16 5 2 0 52 2 1 15 1 0 45 1 0 16 5 0 7 11 4 18 7 1 5 1 0 14 2 0 24 1 0 8 0 1 13 1 0 10 0 4 16 chain 68169 chr5 180915260 + 94968584 94969357 L1PA5 6144 - 70 843 49174 773 chain 24422 chr5 180915260 + 94981833 94982130 AluSp 311 - 15 311 107957 89 8 7 200 chain 9733 chr5 180915260 + 95024277 95024408 L1PB4 2604 + 2442 2572 161925 110 1 0 20 chain 23746 chr5 180915260 + 95041913 95042280 MSTA 426 + 2 403 111796 106 16 40 79 21 12 61 4 23 80 chain 44871 chr5 180915260 + 95043040 95043590 LTR6B 557 - 0 557 63206 22 0 1 12 0 2 19 0 1 4 0 1 91 1 3 41 0 1 312 1 0 47 chain 141886 chr5 180915260 + 95044243 95047764 HERVS71-int 4705 - 259 3714 25843 15 21 13 12 3 2 20 331 234 8 2 0 18 2 0 14 2 1 8 1 0 8 1 0 43 26 21 14 3 1 6 1 0 42 2 1 23 1 0 14 2 0 26 1 0 4 4 2 11 7 6 22 6 3 31 1 0 6 6 4 20 10 6 20 20 16 7 1 0 6 2 1 22 28 22 5 1 0 9 2 0 13 2 1 34 2 1 14 8 6 50 5 2 31 6 5 15 43 37 56 2 0 18 1 0 16 35 29 27 1 0 5 1 0 9 16 10 19 861 982 323 1 0 374 1 0 611 chain 22022 chr5 180915260 + 95048984 95049352 MSTA 426 + 0 403 120131 108 20 44 75 39 30 43 4 23 29 0 1 50 chain 47668 chr5 180915260 + 95051807 95052418 THE1B-int 1605 + 995 1605 60720 183 5 4 189 8 9 114 1 0 111 chain 15155 chr5 180915260 + 95058802 95059016 MER30 238 - 19 237 140897 24 3 0 56 1 0 12 6 14 112 chain 45487 chr5 180915260 + 95064361 95064984 MER41B 635 + 0 635 62510 128 1 2 160 0 1 6 10 12 80 0 1 78 1 0 81 0 5 20 9 12 49 chain 25481 chr5 180915260 + 95088555 95088856 AluY 311 + 2 298 102308 251 5 0 45 chain 12635 chr5 180915260 + 95113906 95114177 MER2 342 - 67 333 149706 158 95 90 18 chain 14982 chr5 180915260 + 95127945 95128119 AluY 311 + 137 311 141376 174 chain 90292 chr5 180915260 + 95164961 95165952 L1PA3long 6157 - 8 1003 39539 841 0 4 150 chain 137058 chr5 180915260 + 95186687 95188353 LTR12C 1709 + 0 1709 26630 209 2 0 281 1 2 184 0 41 120 1 0 132 1 6 137 1 0 4 4 2 106 0 4 296 2 1 87 14 13 84 chain 23299 chr5 180915260 + 95216926 95217232 AluSx3 311 + 0 301 114207 19 12 6 101 0 1 174 chain 22049 chr5 180915260 + 95283858 95284157 AluY 311 + 0 306 120024 47 1 6 70 4 5 21 16 17 140 chain 4420 chr5 180915260 + 95323482 95323630 MER3 215 + 47 215 201689 23 60 0 11 14 94 40 chain 37134 chr5 180915260 + 95334182 95334724 L1PB4 2604 - 74 626 73331 149 38 40 85 0 6 140 16 18 114 chain 12331 chr5 180915260 + 95341969 95342151 MER30 238 - 0 198 150891 64 3 5 43 4 14 14 0 2 14 0 2 40 chain 29444 chr5 180915260 + 95343327 95343638 AluYa5 310 + 0 310 86882 97 1 0 213 chain 223527 chr5 180915260 + 95374073 95376806 L1PA7 6471 - 2 2733 17684 8 5 0 146 1 0 8 0 1 596 1 0 6 0 1 63 2 1 18 2 0 6 0 1 308 1 2 400 0 1 804 1 2 43 0 1 215 3 4 96 chain 28513 chr5 180915260 + 95382393 95382748 THE1A 353 - 0 353 91128 155 1 0 88 2 1 109 chain 101161 chr5 180915260 + 95434409 95435767 L1PA13 3608 - 120 1461 36476 22 1 0 18 2 0 4 2 0 48 8 5 22 16 17 14 7 5 60 2 0 113 1 0 32 1 0 234 1 0 515 3 0 232 chain 544644 chr5 180915260 + 95438912 95444953 L1PA3long 6157 - 7 6157 2121 252 1 0 512 33 0 1441 0 1 661 0 1 93 0 12 2268 0 128 627 0 1 153 chain 269737 chr5 180915260 + 95504283 95507662 HERVH-int 3825 - 0 3825 15195 376 2 0 10 5 8 101 0 210 818 0 1 360 0 12 97 0 3 49 0 1 309 1 0 39 9 0 205 15 0 41 0 2 405 1 0 22 0 1 4 49 305 26 11 10 45 0 1 31 1 0 72 0 1 238 16 1 21 chain 28041 chr5 180915260 + 95507686 95508124 LTR7 482 - 9 482 92850 40 13 14 52 1 2 59 0 1 10 18 49 18 4 5 108 15 14 33 0 1 67 chain 198508 chr5 180915260 + 95520638 95523328 L1PA11 4918 - 340 3018 19317 11 3 1 12 1 0 14 14 10 10 18 12 20 1 0 14 2 0 40 0 4 21 20 18 63 5 0 658 0 4 6 9 4 324 14 17 446 8 6 90 2 3 225 2 1 4 0 1 272 3 7 26 2 1 9 5 6 4 0 1 69 1 2 242 chain 5747 chr5 180915260 + 95545852 95545920 U6 107 - 28 96 187663 68 chain 111444 chr5 180915260 + 95576769 95577975 L1PA3long 6157 - 1 1206 33825 331 1 0 874 chain 3115 chr5 180915260 + 95594153 95594225 MER104 178 + 29 103 222661 27 24 26 21 chain 21432 chr5 180915260 + 95604508 95604886 THE1D 372 + 0 372 122398 61 16 17 35 1 0 47 0 1 8 0 2 7 43 46 88 5 0 4 7 0 56 chain 524562 chr5 180915260 + 95639168 95645610 L1PA7 6471 - 5 6465 4720 9 2 0 149 4 14 110 0 1 489 0 1 76 1 0 945 3 0 390 0 1 379 0 6 289 0 1 94 11 9 414 3 2 1533 2 1 47 7 8 255 0 1 509 1 0 5 1 7 317 1 2 396 chain 3304 chr5 180915260 + 95665849 95665887 MADE2 80 + 4 42 218899 38 chain 38349 chr5 180915260 + 95685770 95686405 MER4A 717 - 8 717 71652 56 118 178 133 0 1 4 0 11 46 6 8 272 chain 462723 chr5 180915260 + 95690736 95696869 L1PA8 5853 - 6 5803 8298 78 10 9 19 2 1 52 1 0 9 2 1 70 2 0 6 0 1 39 1 0 110 0 1 258 308 0 184 1 3 258 6 7 239 0 1 401 0 1 433 0 1 225 1 2 1136 5 0 192 0 1 29 0 1 193 0 2 1057 0 1 7 18 19 10 5 8 22 0 1 28 0 1 421 0 4 197 63 25 11 2 0 22 chain 538657 chr5 180915260 + 95697540 95703665 L1PA5 6144 - 0 6140 3045 146 1 2 1844 7 10 456 0 1 132 0 9 1452 3 0 1222 0 1 48 1 4 813 chain 3303 chr5 180915260 + 95727421 95727458 MER102b 334 - 107 144 218924 37 chain 30509 chr5 180915260 + 95731130 95731500 L1PA7 6471 + 6094 6465 83408 202 2 3 166 chain 29263 chr5 180915260 + 95736509 95736816 AluYk11 308 + 0 307 87726 307 chain 106662 chr5 180915260 + 95787067 95788355 L1PA7 6471 + 5180 6470 35075 520 1 4 7 1 0 445 5 4 147 2 0 5 12 14 108 5 6 30 chain 29648 chr5 180915260 + 95788372 95788680 AluYb8 318 + 0 308 86074 308 chain 11755 chr5 180915260 + 95796043 95796247 L1PA8 5853 + 5653 5853 153241 18 42 39 30 2 1 19 1 0 28 0 1 64 chain 2459 chr5 180915260 + 95803780 95803813 L1PB3 3668 - 138 179 233584 26 0 8 7 chain 27729 chr5 180915260 + 95826907 95827223 AluY 311 + 0 311 93939 123 1 0 10 4 0 178 chain 36707 chr5 180915260 + 95830968 95831459 L1PA8 5853 - 0 485 73949 93 1 0 19 2 1 35 21 20 8 1 0 47 0 1 20 2 0 47 1 0 194 chain 142341 chr5 180915260 + 95832574 95834171 L1PA4 6152 - 9 1606 25755 1597 chain 26941 chr5 180915260 + 95877732 95878027 AluYf4 310 + 0 295 96481 295 chain 61465 chr5 180915260 + 95878471 95879250 L1PA8 5853 + 5073 5853 52127 120 0 3 37 0 2 285 0 1 41 1 0 46 2 0 70 2 1 8 0 1 4 2 1 47 2 1 9 0 1 9 1 0 93 chain 465479 chr5 180915260 + 95885130 95890943 L1PA6 6164 + 4 5842 8203 390 14 20 35 19 0 118 1 0 221 5 22 220 0 1 180 12 11 736 1 0 369 1 2 64 0 1 795 0 1 32 0 1 17 0 4 19 1 5 435 1 0 271 0 1 80 7 8 23 4 9 84 0 1 1062 0 1 48 1 0 20 1 0 7 14 18 345 15 16 145 chain 536722 chr5 180915260 + 95890944 95897061 L1PA4 6152 + 0 6143 3350 102 0 1 592 0 15 526 0 1 1006 10 12 58 1 0 73 0 4 781 1 0 12 1 0 332 0 1 831 0 4 391 1 0 555 0 5 735 3 0 106 chain 26113 chr5 180915260 + 95897091 95897422 L1PA7 6471 + 6132 6466 99562 93 1 2 17 0 1 68 0 1 152 chain 30558 chr5 180915260 + 95909742 95910060 AluYb9 318 - 0 318 83326 318 chain 23320 chr5 180915260 + 95942713 95943005 AluY 311 + 3 296 114089 91 16 16 16 0 1 169 chain 11006 chr5 180915260 + 95954800 95955064 LTR12C 1709 + 658 877 156187 25 41 0 27 0 41 15 26 0 7 13 0 45 9 4 15 1 0 40 chain 2012 chr5 180915260 + 95954842 95954866 LTR12C 1709 + 859 883 191372 24 chain 6300 chr5 180915260 + 95979001 95979082 L1MB8 1703 + 1497 1578 182797 81 chain 9309 chr5 180915260 + 95983201 95983340 MLT1B 390 + 0 151 164023 54 9 21 76 chain 13830 chr5 180915260 + 96017644 96017818 MER44A 345 + 79 259 145135 22 0 6 152 chain 15566 chr5 180915260 + 96026688 96026909 Tigger3d 321 - 55 276 139682 14 8 10 191 2 0 6 chain 104914 chr5 180915260 + 96067181 96068349 L1PA2 6032 - 0 1144 35521 13 24 0 1131 chain 16565 chr5 180915260 + 96068349 96068527 L1PA2 6032 + 4728 4906 136513 178 chain 20284 chr5 180915260 + 96069357 96069600 AluSp 311 + 58 301 126271 243 chain 24373 chr5 180915260 + 96079927 96080291 THE1B 368 - 0 368 108238 109 21 20 7 1 0 19 10 17 27 1 0 169 chain 37592 chr5 180915260 + 96144537 96145070 MER41A 554 - 13 554 72697 55 2 1 4 0 1 28 1 2 35 0 1 67 9 11 97 0 3 140 19 20 76 chain 3018 chr5 180915260 + 96149733 96149773 MLT1E1A 663 - 48 90 224670 14 0 2 26 chain 11814 chr5 180915260 + 96177189 96177397 LTR39 781 + 0 184 152963 16 36 23 7 10 0 53 1 0 85 chain 73612 chr5 180915260 + 96177504 96178700 L1PB1 5432 - 2 1169 46724 5 1 0 24 2 1 7 1 0 24 2 0 23 1 0 11 12 9 16 8 0 12 1 0 4 2 0 9 7 6 43 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 1 0 20 40 36 62 0 2 30 1 0 4 12 13 153 9 1 7 0 7 169 7 5 22 0 10 213 3 0 117 chain 11231 chr5 180915260 + 96262059 96262503 L1MB8 1703 - 41 393 155305 22 115 52 60 160 131 87 chain 6079 chr5 180915260 + 96265359 96265464 MER4D1 891 + 779 884 184588 24 19 13 6 0 6 56 chain 19314 chr5 180915260 + 96266479 96266852 LTR35A 463 - 14 365 129202 102 2 0 26 20 15 18 4 1 15 1 0 17 1 0 13 7 3 21 1 0 8 3 1 22 7 18 39 17 3 29 chain 17901 chr5 180915260 + 96278378 96278588 L1PA5 6144 + 5934 6144 133095 210 chain 49533 chr5 180915260 + 96319797 96320434 PABL_A 660 - 0 660 59365 36 8 7 5 0 1 22 0 4 29 3 1 278 8 10 35 1 0 73 0 11 58 0 9 81 chain 52408 chr5 180915260 + 96326634 96327518 L1PB1 5432 - 10 1235 57347 18 13 11 23 1 0 24 2 0 14 1 0 5 3 1 18 28 16 11 1 0 45 1 0 15 5 0 53 2 0 9 9 5 8 1 0 11 1 0 20 7 0 9 9 12 17 4 112 157 6 4 19 5 4 156 1 0 46 0 1 67 0 275 39 chain 22799 chr5 180915260 + 96358351 96358592 L1PA3long 6157 - 8 249 116581 241 chain 31114 chr5 180915260 + 96376607 96377208 Tigger3b 1229 + 484 1139 82318 41 1 0 4 0 1 22 1 0 9 0 1 4 0 13 7 8 15 9 0 1 12 4 8 25 5 14 13 42 57 30 14 12 79 0 11 51 42 39 46 0 4 68 5 0 59 chain 7123 chr5 180915260 + 96406376 96406462 MER57B1 401 + 0 86 176597 86 chain 25098 chr5 180915260 + 96409750 96410049 AluY 311 + 3 302 104299 8 1 0 121 4 5 165 chain 3903 chr5 180915260 + 96416923 96416974 L1MA3 4352 + 4258 4307 208799 24 1 0 6 1 0 19 chain 3618 chr5 180915260 + 96420604 96420646 LTR12C 1709 - 872 914 213382 42 chain 14289 chr5 180915260 + 96445679 96445871 L1PB2 3958 - 136 324 143593 47 2 1 21 2 0 74 1 0 45 chain 4676 chr5 180915260 + 96474631 96474720 Tigger4a 237 + 148 237 198803 16 2 13 10 4 0 5 7 0 45 chain 26381 chr5 180915260 + 96480525 96480870 THE1C 375 - 0 352 98489 9 0 6 11 1 0 163 10 12 151 chain 45317 chr5 180915260 + 96487876 96489801 L1MA3 4352 - 0 2285 62696 22 6 2 14 1 0 26 12 10 19 7 5 18 4 0 102 100 85 285 18 19 61 1 2 28 1 0 72 1071 1459 8 1 0 48 chain 32925 chr5 180915260 + 96515274 96515665 L1PA7 6471 + 6068 6456 79330 295 2 0 89 1 0 4 chain 168385 chr5 180915260 + 96524577 96527353 L1PB1 5432 - 334 4020 22241 101 1 2 20 0 18 44 17 16 271 3 0 20 11 7 72 99 0 173 5 6 38 0 1 10 4 5 126 0 4 127 5 1300 220 309 1 18 6 1 407 0 1 132 10 9 10 7 8 100 4 0 126 9 6 86 1 14 120 5 6 11 3 4 45 chain 124417 chr5 180915260 + 96541652 96543431 L1PB1 5432 - 12 1759 29566 16 1 0 10 4 3 21 1 0 24 24 19 19 2 3 6 10 0 3 3 0 12 8 7 37 4 3 16 3 1 51 2 0 11 5 1 10 1 0 6 0 3 24 3 0 6 0 6 14 7 6 66 0 2 210 1 0 99 11 13 66 2 0 6 1 0 439 1 0 109 0 1 339 13 7 52 chain 90949 chr5 180915260 + 96548437 96549625 L1PA10 4194 - 33 1240 39278 11 1 0 22 1 20 26 1 0 87 4 5 320 0 1 333 0 2 194 25 23 163 chain 106559 chr5 180915260 + 96549625 96550951 L1PA10 4194 + 1633 2961 35102 194 7 6 389 0 4 20 4 3 379 2 3 16 4 3 12 1 0 75 4 5 219 chain 257512 chr5 180915260 + 96554199 96557080 L1PA4 6152 - 11 2907 15846 7 0 1 128 1 8 515 0 4 242 0 1 604 1 0 692 0 1 46 0 2 645 chain 4926 chr5 180915260 + 96557080 96557135 L1PA4 6152 + 3199 3254 194035 55 chain 32299 chr5 180915260 + 96558246 96558602 L1PA4 6152 - 9 365 80367 356 chain 476952 chr5 180915260 + 96569965 96576123 L1PA6 6164 - 3 6162 7832 7 2 0 261 0 1 218 0 1 275 1 0 74 6 9 283 19 10 97 0 4 551 0 2 415 1 2 59 7 1 40 2 0 5 0 2 312 6 5 333 12 13 855 0 1 1056 86 94 129 6 4 5 0 2 71 0 25 106 11 8 134 12 5 128 1 0 48 2 1 101 55 53 155 0 1 78 32 18 101 chain 23504 chr5 180915260 + 96605465 96605819 L1PA13 3608 - 123 466 113112 19 1 0 18 2 0 4 2 0 48 2 0 8 1 0 52 1 0 46 22 20 29 0 1 80 1 0 18 chain 109758 chr5 180915260 + 96630062 96631254 L1PA3long 6157 - 245 1437 34268 1192 chain 94481 chr5 180915260 + 96631254 96632293 L1PA3long 6157 + 3662 4701 38175 1039 chain 515929 chr5 180915260 + 96635421 96642801 L1PA5 6144 - 74 6139 5580 64 1 0 1180 1333 0 168 0 1 73 1 0 45 0 3 108 10 5 740 0 5 181 0 1 630 0 1 445 0 3 59 0 1 499 0 1 521 0 1 183 0 3 80 5 6 413 4 5 279 0 2 137 0 1 112 1 0 5 0 1 103 chain 110403 chr5 180915260 + 96636670 96637999 LTR12C 1709 + 0 1709 34095 650 0 278 184 1 0 4 4 2 106 0 4 168 0 102 123 12 11 77 chain 54200 chr5 180915260 + 96644466 96645148 LTR12_ 688 - 0 688 56233 175 1 0 145 3 1 149 1 2 46 24 32 138 chain 451350 chr5 180915260 + 96647752 96653281 HERV9-int 5642 - 0 5642 8724 17 2 0 3 4 0 19 28 5 14 1 0 59 1 0 23 11 9 33 8 6 225 6 5 234 1 0 4 0 1 218 0 1 63 0 1 151 1 2 411 0 3 95 4 8 230 0 1 585 1 0 350 0 1 686 0 10 715 0 1 95 0 1 40 1 0 72 0 1 115 5 6 12 4 5 91 0 1 219 1 0 79 0 4 108 4 3 27 0 2 193 0 1 52 0 118 26 2 4 72 0 1 61 3 0 44 chain 65128 chr5 180915260 + 96653310 96654142 LTR12 884 - 1 884 50513 75 0 2 97 1 0 309 0 22 13 0 25 176 25 3 13 0 25 123 chain 17138 chr5 180915260 + 96654425 96654788 MSTA 426 - 12 426 135211 150 14 51 38 1 6 13 8 12 15 83 88 41 chain 509152 chr5 180915260 + 96664695 96672550 L1PA7 6471 - 2 6471 6233 10 2 0 831 1 6 95 0 1 373 0 2 196 1 0 281 0 8 112 0 3 105 0 1 176 3 1 55 0 3 171 0 1 47 0 4 75 0 1 332 0 9 73 1 0 102 2 1 321 1441 0 432 0 2 329 0 1 14 13 14 646 0 2 77 0 1 249 6 7 34 0 3 41 5 6 274 14 21 52 1 2 378 1 2 77 19 22 387 chain 121351 chr5 180915260 + 96668100 96669501 L1PA4 6152 - 9 1402 30528 1053 19 11 329 chain 22078 chr5 180915260 + 96681017 96681299 L1P2 5180 + 2090 2360 119891 25 8 0 65 3 0 137 3 2 41 chain 76585 chr5 180915260 + 96696615 96697554 L1PA7 6471 + 5521 6461 45171 23 1 2 52 5 0 16 0 3 135 0 1 553 3 4 151 chain 67579 chr5 180915260 + 96718669 96719412 L1PA3long 6157 - 406 1157 49409 488 0 7 81 0 1 174 chain 35662 chr5 180915260 + 96734664 96735105 LTR7 482 - 8 482 75320 37 16 18 124 1 32 263 chain 15646 chr5 180915260 + 96743386 96743572 LTR12C 1709 + 869 1055 139449 186 chain 43643 chr5 180915260 + 96759911 96760446 L1PA6 6164 - 2 593 64638 184 1 2 132 20 75 198 chain 29683 chr5 180915260 + 96780534 96781071 L1PA14 3548 + 3000 3485 85892 5 2 0 102 15 11 13 2 0 6 1 0 84 1 0 111 43 11 17 0 2 17 4 2 12 5 3 19 1 0 41 6 0 9 1 0 20 chain 59461 chr5 180915260 + 96784239 96784925 L1PA6 6164 - 2 689 53137 329 0 1 357 chain 12145 chr5 180915260 + 96784928 96785066 L1PA6 6164 + 5338 5476 151629 138 chain 24186 chr5 180915260 + 96792895 96793177 AluY 311 + 17 300 109293 115 0 1 167 chain 25273 chr5 180915260 + 96795706 96795999 AluY 311 + 10 305 103354 121 0 2 172 chain 12598 chr5 180915260 + 96822908 96823148 L1MA1 4479 - 289 513 149840 16 29 19 4 1 0 9 1 0 35 2 0 30 7 6 46 1 0 59 chain 552458 chr5 180915260 + 96849629 96855647 L1PA2 6032 - 13 6031 1137 820 1 2 4941 1 0 255 chain 176109 chr5 180915260 + 96859269 96861204 L1PA3long 6157 - 1 1937 21345 1689 0 1 246 chain 110943 chr5 180915260 + 96876704 96878146 LTR12C 1709 - 0 1709 33953 84 5 4 393 11 4 40 0 2 64 3 1 5 1 0 104 0 278 259 0 4 6 8 1 40 1 0 124 0 1 34 1 2 259 chain 120874 chr5 180915260 + 96914832 96916260 LTR12C 1709 - 0 1709 30738 481 0 4 106 8 165 99 0 118 435 1 2 36 0 1 262 chain 26568 chr5 180915260 + 96931292 96931713 L1PA8 5853 - 0 418 97771 93 1 0 17 8 7 37 23 21 70 3 1 24 20 23 125 chain 144883 chr5 180915260 + 96931713 96933543 L1PA8 5853 + 3556 5424 25345 86 2 1 5 0 1 325 0 1 359 3 0 35 1 2 74 0 30 10 0 1 23 0 6 472 0 1 18 4 3 73 0 2 340 chain 37127 chr5 180915260 + 96952305 96952721 L1PA4 6152 - 0 417 73341 304 0 1 112 chain 57818 chr5 180915260 + 96952721 96953373 L1PA4 6152 + 5074 5737 54078 224 0 4 218 3 11 201 1 0 5 chain 192321 chr5 180915260 + 96967145 96969227 L1PA2 6032 + 3950 6032 19834 2082 chain 135234 chr5 180915260 + 96977370 96978845 L1PA3long 6157 - 5 1480 26972 1475 chain 22317 chr5 180915260 + 96995165 96995422 AluY 311 + 28 286 118842 104 0 1 153 chain 39861 chr5 180915260 + 97001017 97001478 L1PA4 6152 - 1 467 69517 106 1 2 8 1 6 27 1 0 317 chain 9529 chr5 180915260 + 97014814 97014934 MER57B1 401 - 172 292 162936 120 chain 483457 chr5 180915260 + 97014972 97020539 L1PA4 6152 - 1 5581 7611 112 0 1 2872 0 1 380 0 12 1503 0 3 5 3 0 18 2 0 6 0 2 172 9 8 485 chain 394685 chr5 180915260 + 97036213 97041177 L1PA6 6164 - 222 6161 10291 617 1 2 958 1 9 461 1 0 180 12 13 760 2 3 322 7 17 577 0 3 5 3 0 162 0 200 598 1 0 4 0 1 73 1 0 6 0 1 6 0 19 42 14 15 63 0 735 87 chain 525119 chr5 180915260 + 97053506 97059599 L1PA4 6152 - 9 6152 4674 138 1 8 842 1 0 2489 0 1 150 1 0 143 0 1 38 0 1 12 0 1 213 0 1 355 0 1 305 0 1 64 0 4 649 0 3 482 1 18 82 5 19 122 chain 40877 chr5 180915260 + 97095413 97095961 MLT2A2 560 - 0 560 68053 147 7 19 214 13 12 107 0 1 60 chain 531763 chr5 180915260 + 97102329 97108331 L1PA3long 6157 - 5 6157 3994 248 1 0 596 0 1 953 0 4 816 0 11 103 0 6 240 1 0 247 0 4 1319 0 1 329 11 5 313 0 2 45 0 128 628 0 1 152 chain 44720 chr5 180915260 + 97112550 97113160 L1PA10 4194 - 44 654 63359 21 15 12 41 1 0 9 0 2 317 11 12 122 1 2 72 chain 115093 chr5 180915260 + 97117887 97119447 THE1B-int 1605 - 5 1605 32760 4 0 1 552 21 22 28 13 12 18 1 0 4 2 3 392 12 21 34 11 8 50 3 28 94 0 8 321 chain 549180 chr5 180915260 + 97145618 97151644 L1PA2 6032 - 0 6030 1553 823 3 6 1234 0 1 3646 6 5 126 0 1 188 chain 17352 chr5 180915260 + 97181610 97181822 L1PA7 6471 - 22 234 134655 130 1 0 72 0 1 9 chain 7851 chr5 180915260 + 97185988 97186184 L1MA8 2339 - 0 174 171988 40 50 35 7 1 0 59 11 5 28 chain 12321 chr5 180915260 + 97205421 97205673 L1PA16 3655 + 3393 3619 150935 74 7 8 88 67 40 16 chain 21107 chr5 180915260 + 97221707 97222085 THE1D 372 + 0 372 123533 15 0 2 37 9 0 20 3 0 6 19 23 59 47 49 13 1 0 31 1 0 117 chain 150061 chr5 180915260 + 97225711 97227510 L1PA7 6471 - 19 1825 24604 623 0 5 8 1 0 187 2 7 100 9 2 347 0 1 223 1 0 125 0 1 145 0 4 28 chain 539720 chr5 180915260 + 97232862 97239000 L1PA4 6152 - 1 6151 2863 632 1 0 211 0 4 326 0 1 664 0 2 1623 0 1 662 1 0 62 0 1 116 0 5 1079 2 0 221 0 2 538 chain 10529 chr5 180915260 + 97246927 97247072 MER30 238 - 5 164 158135 105 9 22 8 0 1 23 chain 113898 chr5 180915260 + 97262523 97263822 L1PA4 6152 - 27 1326 33123 842 0 1 4 1 0 452 chain 4040 chr5 180915260 + 97265382 97265492 MER77 626 + 81 192 206783 28 50 51 32 chain 22397 chr5 180915260 + 97284260 97284528 AluY 311 + 29 299 118495 22 6 7 74 0 1 166 chain 78431 chr5 180915260 + 97285037 97285997 L1PA6 6164 - 2 945 44303 6 6 0 48 16 1 88 3 4 12 2 1 260 0 1 430 0 3 89 chain 30452 chr5 180915260 + 97325438 97325918 L1PB2 3958 + 3378 3837 83528 54 26 19 94 1 0 73 1 0 63 1 0 12 13 9 29 4 0 18 6 4 22 1 0 62 chain 529835 chr5 180915260 + 97327017 97333143 L1PA4 6152 + 0 6134 4207 161 0 6 6 6 0 1210 4 0 936 0 1 190 2 0 1533 0 1 482 0 1 101 0 1 505 1 5 10 0 5 370 0 3 554 2 0 53 chain 88608 chr5 180915260 + 97344001 97345086 L1PA7 6471 + 5382 6470 40141 239 1 0 342 4 5 163 1 4 335 chain 527622 chr5 180915260 + 97358302 97364764 L1PA4 6152 + 2 6151 4435 152 3 4 367 1 5 8 2 0 298 17 0 173 2 3 359 0 1 197 9 1 251 1 2 565 0 4 36 0 3 747 6 7 137 304 0 360 1 3 6 1 0 2436 0 1 23 chain 32312 chr5 180915260 + 97364893 97365333 MLT2A1 477 - 0 477 80348 31 24 64 212 4 1 169 chain 449227 chr5 180915260 + 97365333 97370978 HERVL-int 5654 - 0 5654 8785 162 0 10 400 0 1 76 0 1 4 1 0 93 11 17 796 0 1 76 0 3 445 49 30 394 0 19 45 0 3 267 19 0 200 0 1 185 31 34 486 8 10 76 1 0 421 2 0 5 0 2 307 4 0 402 0 1 83 14 15 346 1 2 235 chain 33945 chr5 180915260 + 97370978 97371429 MLT2A1 477 - 0 477 77699 32 12 38 237 4 1 78 0 3 88 chain 3685 chr5 180915260 + 97377124 97377170 MER5B 177 - 6 52 212155 46 chain 17153 chr5 180915260 + 97415181 97415394 L1PA5 6144 + 5929 6144 135158 67 1 8 134 5 0 6 chain 250067 chr5 180915260 + 97415786 97418811 HERVH-int 3825 + 436 3825 16249 45 0 56 33 1 0 10 1 0 12 0 1 5 0 31 28 0 61 22 22 25 13 0 3 2245 0 1 93 8 218 88 23 23 376 chain 28535 chr5 180915260 + 97420618 97421019 LTR7 482 + 0 482 91020 68 9 47 109 0 1 41 17 58 30 1 2 126 chain 528195 chr5 180915260 + 97449161 97455300 L1PA5 6144 + 0 6142 4382 1672 0 2 212 1 0 519 0 1 315 0 7 256 1 0 178 1 2 231 0 1 881 0 1 71 0 4 814 18 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1 483 0 1 46 15 16 170 chain 549883 chr5 180915260 + 97678702 97684850 L1PA3long 6157 + 6 6157 1461 735 0 1 1416 0 1 1049 1 2 1053 0 1 1032 6 5 701 14 14 141 chain 2946 chr5 180915260 + 97718495 97718544 L1PREC2 3366 - 604 651 226221 10 5 3 34 chain 80122 chr5 180915260 + 97731505 97732392 L1PA3long 6157 + 5270 6156 43537 882 1 0 4 chain 18091 chr5 180915260 + 97779015 97779360 THE1B 368 - 0 368 132613 90 71 80 21 1 0 94 30 45 38 chain 47574 chr5 180915260 + 97804652 97805279 LTR12_ 688 - 0 688 60786 175 1 0 222 0 1 12 26 39 52 1 49 138 chain 3608 chr5 180915260 + 97807584 97807633 MSTC 436 + 372 423 213504 17 1 3 31 chain 4251 chr5 180915260 + 97817335 97817448 MLT1E2 623 + 1 113 203867 17 52 51 44 chain 23415 chr5 180915260 + 97828532 97828799 L1PA4 6152 + 5885 6151 113566 117 1 0 149 chain 13580 chr5 180915260 + 97831427 97831585 L1PA8A 6298 - 221 379 146057 158 chain 13047 chr5 180915260 + 97831809 97832080 L1PB1 5432 + 5158 5413 148046 9 2 0 53 2 1 16 1 0 42 2 1 16 3 0 7 14 5 19 8 5 14 11 9 11 1 9 16 1 0 13 1 0 9 chain 4561 chr5 180915260 + 97839824 97839878 MIR 256 + 129 183 200093 54 chain 23161 chr5 180915260 + 97847604 97847899 AluSx1 309 + 10 301 114851 115 1 0 159 3 0 17 chain 114315 chr5 180915260 + 97868314 97869796 L1PA8 5853 - 0 1631 32992 93 1 0 19 2 1 52 12 10 68 2 0 46 1 0 144 0 9 398 18 27 136 0 1 30 0 1 289 2 137 58 1 0 21 0 2 89 chain 13010 chr5 180915260 + 97878273 97878531 L1PA11 4918 + 4328 4567 148207 63 16 13 71 2 0 14 5 4 15 21 12 10 13 9 28 chain 543658 chr5 180915260 + 97882374 97888397 L1PA3long 6157 + 4 6152 2247 148 0 1 558 7 0 65 0 128 1359 1 3 2214 0 1 1671 chain 23428 chr5 180915260 + 97907522 97907807 L1PA7 6471 - 3 285 113484 7 4 0 254 0 1 20 chain 64823 chr5 180915260 + 97907807 97908608 L1PA7 6471 + 5377 6184 50649 50 0 1 156 9 10 28 3 8 67 0 2 157 1 2 39 4 0 287 chain 127838 chr5 180915260 + 97926256 97927708 L1PA4 6152 + 4691 6143 28611 608 1 2 517 1 0 325 chain 76114 chr5 180915260 + 97930435 97931292 L1PA5 6144 + 5286 6144 45414 748 0 1 109 chain 11861 chr5 180915260 + 97939197 97939361 L1PB4 2604 + 2384 2552 152784 108 3 7 53 chain 18971 chr5 180915260 + 97944968 97945239 L1PA8 5853 + 5587 5853 130181 21 2 0 70 2 1 14 1 0 4 1 2 41 2 1 19 1 0 93 chain 3271 chr5 180915260 + 97952218 97952261 L1MB2 1706 - 12 61 219557 37 0 6 6 chain 3156 chr5 180915260 + 97952531 97952573 L1MA4 2864 - 63 103 221803 35 2 0 5 chain 8160 chr5 180915260 + 97985196 97985286 L1PA4 6152 + 6053 6143 170172 90 chain 19267 chr5 180915260 + 97994465 97994702 L1PA5 6144 - 0 242 129327 10 2 0 137 1 8 87 chain 403737 chr5 180915260 + 98004133 98010460 L1PA8A 6298 + 64 6288 9979 7 2 0 7 6 1 21 4 1 18 19 11 19 0 3 5 7 2 11 1 0 7 4 2 8 2 0 18 6 3 13 1 0 8 1 0 9 1 0 5 2 1 13 5 1 7 1 0 43 1 0 9 27 13 57 21 9 11 2 0 9 22 19 84 0 1 25 703 1 13 1 701 46 19 16 172 0 1 4 1 0 40 0 1 4 15 14 10 0 1 172 0 5 312 7 0 309 0 2 62 4 5 17 0 1 54 1 2 60 8 1 300 1 0 183 7 8 147 0 1 49 0 1 112 1 0 19 3 0 5 0 3 6 0 5 5 8 0 555 0 2 299 1 6 259 0 8 427 0 1 160 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98054164 L1PA7 6471 + 4730 4984 120643 249 3 0 5 chain 124274 chr5 180915260 + 98054173 98055646 L1PA7 6471 + 4996 6466 29600 624 2 3 770 12 8 65 chain 43222 chr5 180915260 + 98059604 98060078 L1PA3long 6157 + 5683 6157 65145 474 chain 2815 chr5 180915260 + 98062946 98062979 MLT1J1 437 + 52 86 228554 25 0 1 8 chain 159719 chr5 180915260 + 98072919 98074984 L1PA5 6144 + 0 6132 23374 135 17 31 513 1 2 271 25 0 57 0 4081 294 0 1 331 0 2 217 8 1 50 10 1 9 0 9 127 chain 281747 chr5 180915260 + 98078794 98082736 L1PA10 4194 + 251 4150 14548 20 2 0 15 59 32 19 2 0 16 1 0 7 0 3 11 1 0 6 1 0 15 10 0 8 2 1 37 28 35 12 5 3 412 0 1 55 3 1 143 0 1 23 18 0 27 0 2 6 4 1 43 2 4 81 5 0 193 16 16 515 0 4 292 0 1 51 0 1 246 1 2 5 1 0 22 18 19 6 1 0 298 22 23 139 2 6 315 0 3 181 4 5 43 19 22 160 0 1 5 1 2 209 2 0 34 8 6 34 chain 30561 chr5 180915260 + 98088240 98088652 LTR7 482 - 0 482 83279 190 8 39 28 0 1 109 8 46 69 chain 2916 chr5 180915260 + 98089097 98089129 MER5B 177 + 73 105 226761 32 chain 25505 chr5 180915260 + 98092535 98092907 THE1B 368 + 0 368 102200 13 2 0 23 1 6 48 11 7 76 4 3 16 2 0 176 chain 6674 chr5 180915260 + 98106387 98106508 MER50 708 + 495 601 179871 42 1 0 10 9 0 7 2 1 4 4 0 42 chain 20961 chr5 180915260 + 98150190 98150422 SVA_B 1603 + 1365 1597 124063 232 chain 39175 chr5 180915260 + 98157717 98158479 L1PB1 5432 + 4714 5430 70498 40 1 0 169 1 0 4 0 1 9 5 6 118 23 23 14 28 16 24 1 0 5 2 1 14 17 11 51 3 1 14 6 5 38 3 2 16 2 0 6 18 6 9 0 2 7 27 22 25 1 0 20 1 0 9 5 4 16 1 0 4 1 0 4 chain 30427 chr5 180915260 + 98187244 98187562 AluYb8 318 - 0 318 83608 318 chain 13468 chr5 180915260 + 98220077 98220352 L1PB1 5432 + 5170 5422 146456 50 2 1 12 7 6 42 2 1 14 28 16 15 3 0 19 2 0 24 1 0 21 1 0 13 1 0 18 chain 7126 chr5 180915260 + 98261499 98261645 MER3 215 + 48 215 176569 55 47 68 44 chain 32654 chr5 180915260 + 98289055 98289489 MLT2A1 477 - 0 477 79757 6 0 4 30 0 42 179 0 1 36 2 1 9 5 2 167 chain 145560 chr5 180915260 + 98291006 98292617 L1PA4 6152 - 9 1619 25243 147 1 0 104 1 0 730 0 1 628 chain 77006 chr5 180915260 + 98323193 98324043 L1PA3long 6157 + 5306 6156 44963 850 chain 10650 chr5 180915260 + 98325216 98325358 L1PB4 2604 + 1906 2064 157605 16 2 18 124 chain 11867 chr5 180915260 + 98328802 98328963 L1PA8 5853 + 5693 5853 152752 46 3 2 12 0 1 6 2 1 92 chain 22727 chr5 180915260 + 98342986 98343259 AluSq4 311 - 34 309 116947 145 0 1 25 0 1 103 chain 27382 chr5 180915260 + 98346536 98346958 LTR7B 505 - 9 505 95020 42 14 13 54 0 1 20 2 1 54 1 89 27 35 11 69 0 10 86 0 1 18 chain 209702 chr5 180915260 + 98348756 98352180 HERVH-int 3825 - 0 3780 18509 153 446 696 40 0 1 474 2 0 80 9 26 105 1 0 179 0 1 290 0 1 168 1 0 4 1 0 4 0 1 56 5 11 105 9 0 6 1 0 172 48 18 47 13 16 108 2 0 34 3 2 228 99 23 20 0 1 4 7 193 12 0 1 10 1 0 50 10 12 140 10 17 236 0 1 12 7 10 12 chain 28275 chr5 180915260 + 98352236 98352658 LTR7B 505 - 10 505 92014 41 14 13 54 0 1 21 1 0 54 1 89 27 35 11 69 0 10 105 chain 517496 chr5 180915260 + 98373033 98379464 L1PA7 6471 + 19 6454 5423 224 0 1 135 6 7 26 1 0 127 7 12 230 5 4 439 7 0 28 17 36 53 14 18 165 0 1 18 19 0 17 10 9 591 0 4 472 25 12 849 1 0 26 5 0 172 1 10 26 1 2 234 0 1 560 0 1 436 2 1 462 0 1 170 0 4 18 2 1 76 0 2 754 chain 29689 chr5 180915260 + 98426694 98427012 AluYb8 318 - 0 318 85868 318 chain 46708 chr5 180915260 + 98460357 98460880 L1PA4 6152 - 1 535 61449 48 0 9 6 0 2 469 chain 74574 chr5 180915260 + 98478864 98479951 MER11A 1151 - 7 1151 46223 156 6 7 60 0 1 36 18 0 22 43 0 26 0 26 28 13 12 70 0 1 17 1 2 136 0 7 9 7 1 86 0 1 58 1 2 86 4 0 63 2 1 52 8 0 24 0 99 55 chain 515280 chr5 180915260 + 98481880 98488044 L1PA5 6144 + 0 6120 5640 120 0 14 252 59 6 333 1 0 4 0 1 69 7 0 110 0 9 21 0 4 226 9 0 209 0 4 203 6 5 711 25 13 844 1 0 44 3 0 56 0 2 21 5 6 439 0 4 112 1 2 1464 0 1 209 0 1 313 1 0 156 1 3 129 chain 7423 chr5 180915260 + 98509499 98509584 L1PA4 6152 + 6065 6151 174628 77 0 1 8 chain 226645 chr5 180915260 + 98516626 98519202 L1PA5 6144 - 6 2587 17505 1995 0 3 103 0 1 294 1 2 183 chain 47636 chr5 180915260 + 98519202 98519752 L1PA5 6144 + 2322 2872 60671 550 chain 25545 chr5 180915260 + 98519752 98520048 L1PA5 6144 + 2879 3175 102018 296 chain 27278 chr5 180915260 + 98520048 98520366 L1PA5 6144 + 3188 3506 95344 318 chain 67530 chr5 180915260 + 98521703 98522465 L1PA3long 6157 - 15 780 49427 597 0 4 159 1 0 5 chain 15116 chr5 180915260 + 98596219 98596455 L1MA2 4263 + 3823 4054 140998 40 0 2 5 7 0 13 4 6 67 11 9 89 chain 28878 chr5 180915260 + 98610425 98610745 AluYb8 318 - 2 318 89554 65 4 0 251 chain 80507 chr5 180915260 + 98625625 98626524 L1PA3long 6157 - 0 899 43387 155 1 0 461 0 1 282 chain 75566 chr5 180915260 + 98632904 98633772 L1PA3long 6157 - 68 922 45736 500 19 5 349 chain 8269 chr5 180915260 + 98633858 98634034 L1PB1 5432 + 5260 5423 169572 19 2 1 16 4 0 30 14 11 11 2 0 22 1 0 23 2 1 24 1 0 5 chain 75239 chr5 180915260 + 98634327 98635185 L1PA5 6144 + 5284 6144 45905 846 1 3 11 chain 89833 chr5 180915260 + 98664096 98665121 LTR5A 1029 + 0 1029 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98791678 98792730 L1PA3long 6157 + 5104 6156 37816 1052 chain 46733 chr5 180915260 + 98799997 98800553 L1PA7 6471 + 5910 6465 61429 398 1 0 157 chain 16247 chr5 180915260 + 98803464 98803649 L1PA3long 6157 - 0 184 137626 148 1 0 36 chain 21403 chr5 180915260 + 98820215 98820572 THE1B 368 + 2 368 122498 167 1 0 23 40 50 29 0 1 28 30 29 39 chain 35103 chr5 180915260 + 98821987 98822369 L1PA3long 6157 - 927 1309 75926 382 chain 82289 chr5 180915260 + 98822369 98823288 L1PA3long 6157 + 5236 6157 42630 873 0 2 46 chain 5229 chr5 180915260 + 98837008 98837067 L1PA5 6144 - 2420 2479 189235 59 chain 208478 chr5 180915260 + 98837067 98839481 L1PA5 6144 + 3717 6144 18608 292 0 1 122 0 1 114 1 0 4 0 1 224 1 0 4 0 1 758 0 2 53 0 6 65 0 4 757 1 0 18 chain 44842 chr5 180915260 + 98841285 98841818 L1PA7 6471 - 21 556 63238 96 3 4 40 1 2 393 chain 44387 chr5 180915260 + 98844687 98845199 MER9a2 513 - 0 513 63704 453 0 1 59 chain 9410 chr5 180915260 + 98862170 98862360 THE1B 368 - 169 366 163505 26 5 4 52 11 12 19 21 31 6 3 0 47 chain 100635 chr5 180915260 + 98862372 98863898 THE1B-int 1605 - 11 1592 36598 70 0 5 96 19 24 88 0 5 58 0 6 78 0 14 193 6 1 117 11 12 119 8 14 17 15 16 109 9 16 76 7 71 80 109 55 241 chain 542964 chr5 180915260 + 98893447 98899598 L1PA4 6152 - 1 6146 2350 3608 1 0 1479 0 2 90 0 1 376 1 0 15 1 0 120 6 0 454 chain 3211 chr5 180915260 + 98901218 98901252 MER57B1 401 + 0 34 220732 34 chain 4215 chr5 180915260 + 98921707 98921765 MLT1C 463 + 31 87 204354 19 2 0 37 chain 7983 chr5 180915260 + 98949894 98950245 MSTD 398 - 17 370 171148 51 64 56 22 130 134 24 20 26 40 chain 19177 chr5 180915260 + 99013194 99013438 L1PA4 6152 - 9 260 129592 139 18 25 87 chain 3575 chr5 180915260 + 99026522 99026560 L1PA2 6032 - 2201 2239 214051 38 chain 202893 chr5 180915260 + 99026560 99028762 L1PA2 6032 + 3829 6031 19002 2202 chain 271310 chr5 180915260 + 99044102 99047082 L1PA3long 6157 - 3 2983 15118 2980 chain 4194 chr5 180915260 + 99072545 99072593 MSTA 426 - 234 282 204628 48 chain 29556 chr5 180915260 + 99079074 99079389 AluYb8 318 - 5 318 86396 5 2 0 308 chain 16961 chr5 180915260 + 99090582 99090765 L1PA3long 6157 + 5966 6149 135698 183 chain 9543 chr5 180915260 + 99091057 99091167 L1PA16 3655 + 3427 3537 162868 110 chain 482429 chr5 180915260 + 99093645 99099935 L1PA7 6471 - 47 6470 7645 14 0 1 243 8 13 14 3 4 36 23 14 381 0 1 76 1 0 5 9 0 82 1 2 12 0 1 32 0 1 237 0 1 273 0 2 20 7 4 632 1 3 43 0 1 274 5 4 168 2 3 297 11 11 16 0 1 139 3 4 61 0 32 610 0 1 23 5 1 226 1 2 80 0 1 5 6 5 80 1 0 4 0 1 33 0 3 263 0 66 401 0 8 97 3 4 138 9 13 752 0 1 6 29 32 7 2 0 74 0 1 42 0 2 21 6 21 35 0 4 50 14 15 133 1 0 4 chain 6187 chr5 180915260 + 99116352 99116436 MER44B 551 - 398 482 183684 84 chain 4229 chr5 180915260 + 99133639 99133688 HERVL-int 5654 + 4767 4816 204191 49 chain 3693 chr5 180915260 + 99134116 99134155 MLT2A1 477 + 438 477 212041 39 chain 262689 chr5 180915260 + 99164663 99167573 L1PA3long 6157 - 4 2913 15554 1617 3 0 436 0 2 854 chain 75343 chr5 180915260 + 99184371 99185212 L1PA3long 6157 + 5314 6157 45851 558 0 3 265 1 0 17 chain 549189 chr5 180915260 + 99191686 99197648 L1PA2 6032 + 7 6029 1552 783 0 60 5179 chain 34960 chr5 180915260 + 99197648 99198034 L1PA2 6032 + 5646 6032 76247 386 chain 14345 chr5 180915260 + 99198594 99198766 THE1B 368 - 196 368 143399 172 chain 9605 chr5 180915260 + 99208260 99208467 L1PB1 5432 + 5198 5384 162573 22 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 28 23 20 1 0 14 chain 50119 chr5 180915260 + 99211761 99212312 L1PA5 6144 - 593 1145 58931 36 0 1 515 chain 50414 chr5 180915260 + 99212312 99212893 L1PA5 6144 + 5561 6144 58702 569 1 3 11 chain 95644 chr5 180915260 + 99232074 99233108 L1PA2 6032 + 3603 4637 37918 1034 chain 128614 chr5 180915260 + 99233130 99234524 L1PA2 6032 + 4637 6031 28415 1394 chain 50098 chr5 180915260 + 99255311 99255946 LTR12_ 688 + 2 687 58944 23 9 8 22 0 41 169 1 11 411 chain 26956 chr5 180915260 + 99261713 99262021 L1PA3long 6157 + 5849 6157 96426 116 0 1 42 1 0 149 chain 299649 chr5 180915260 + 99294654 99298368 L1PA7 6471 - 37 3737 13444 197 1 0 616 4 3 603 0 1 915 1 0 39 0 1 557 4 0 16 11 2 218 0 1 107 2 1 35 9 5 211 2 4 34 0 2 132 chain 149884 chr5 180915260 + 99319940 99321718 HERV9-int 5642 + 3031 4815 24623 534 0 1 283 1 3 5 2 0 44 19 23 317 0 1 573 chain 10152 chr5 180915260 + 99322479 99322639 LTR12F 595 - 0 165 159840 27 14 15 34 5 9 80 chain 43320 chr5 180915260 + 99337120 99337599 L1PA3long 6157 - 0 479 65009 479 chain 26579 chr5 180915260 + 99348528 99348832 L1PA7 6471 + 6157 6461 97727 304 chain 211478 chr5 180915260 + 99407089 99409511 L1PA5 6144 - 0 2427 18401 67 2 0 777 0 6 813 0 1 4 1 0 224 0 1 4 1 0 114 0 1 415 chain 82178 chr5 180915260 + 99423310 99424230 L1PA3long 6157 - 0 921 42691 5 3 0 838 0 4 74 chain 34152 chr5 180915260 + 99424230 99424611 L1PA3long 6157 + 4848 5230 77292 16 0 1 365 chain 21516 chr5 180915260 + 99426031 99426388 THE1B 368 - 0 366 122083 39 30 29 29 0 1 28 40 50 23 1 0 167 chain 156513 chr5 180915260 + 99505328 99507080 L1PA4 6152 + 4399 6151 23796 1499 1 0 229 0 1 23 chain 12489 chr5 180915260 + 99517077 99517209 L1PA4 6152 - 237 369 150295 132 chain 18178 chr5 180915260 + 99517209 99517409 L1PA4 6152 + 5935 6135 132388 200 chain 8207 chr5 180915260 + 99546943 99547127 L1PA15 4387 + 4198 4366 169915 8 4 0 11 1 0 42 19 16 38 2 0 14 17 12 17 1 0 10 chain 3762 chr5 180915260 + 99551183 99551229 MLT1A0 366 + 297 343 210937 46 chain 68391 chr5 180915260 + 99554427 99555196 L1PA3long 6157 + 5391 6153 49094 612 7 0 150 chain 37968 chr5 180915260 + 99556061 99556504 L1PA4 6152 + 5570 6006 72177 429 7 0 7 chain 10004 chr5 180915260 + 99556504 99556625 L1PA4 6152 + 6013 6134 160562 121 chain 29256 chr5 180915260 + 99576587 99576972 MSTA-int 1630 + 2 386 87760 10 1 2 315 2 0 57 chain 9781 chr5 180915260 + 99584193 99584311 L1PA7 6471 + 6352 6470 161693 118 chain 6872 chr5 180915260 + 99594848 99594933 MLT2A2 560 - 270 355 178418 85 chain 15900 chr5 180915260 + 99599898 99600124 MER30 238 + 0 236 138658 7 4 0 104 14 28 97 chain 23637 chr5 180915260 + 99606700 99606968 L1PA4 6152 + 5884 6151 112376 8 1 0 259 chain 28980 chr5 180915260 + 99608164 99608466 AluYb8 318 + 0 302 89090 302 chain 49908 chr5 180915260 + 99616557 99617112 L1PA3long 6157 - 0 556 59085 131 0 1 424 chain 89811 chr5 180915260 + 99618740 99619735 L1PA3long 6157 - 0 995 39721 858 1 0 94 0 1 42 chain 209428 chr5 180915260 + 99622291 99624918 L1PA5 6144 + 2104 6126 18533 71 1 3 135 1 0 224 0 2 493 201 1593 690 6 5 669 0 1 136 chain 15490 chr5 180915260 + 99623239 99623417 L1PA5 6144 - 1521 1699 139926 178 chain 134654 chr5 180915260 + 99645302 99647335 L1PA7 6471 + 4766 6465 27081 183 1 0 131 0 1 69 5 3 42 0 1 426 2 0 127 7 5 46 333 8 8 0 1 210 3 0 80 2 0 29 5 6 179 2 1 143 chain 4770 chr5 180915260 + 99649010 99649122 L1MA5A 2387 + 1182 1302 197697 33 43 51 36 chain 8378 chr5 180915260 + 99651854 99652032 L1MA5A 2387 + 2036 2205 168979 29 1 0 22 26 20 40 26 24 34 chain 13232 chr5 180915260 + 99652118 99652275 L1PA4 6152 - 1521 1678 146706 157 chain 128435 chr5 180915260 + 99652275 99653750 L1PA4 6152 + 4662 6140 28469 570 4 7 901 chain 25570 chr5 180915260 + 99659454 99659726 L1PA3long 6157 - 0 272 101875 272 chain 15089 chr5 180915260 + 99659726 99659897 L1PA3long 6157 + 5727 5901 141063 31 0 3 140 chain 60709 chr5 180915260 + 99665797 99666500 L1P1 4361 - 20 721 52466 12 2 1 23 1 0 155 1 0 243 0 1 266 chain 43088 chr5 180915260 + 99704597 99705120 L1PA6 6164 - 9 536 65305 12 0 4 511 chain 26825 chr5 180915260 + 99717935 99718220 AluYa5 310 - 9 294 96897 285 chain 101698 chr5 180915260 + 99721845 99723376 THE1B-int 1605 + 13 1599 36343 241 108 54 81 7 71 76 9 16 109 15 16 18 6 12 120 11 12 117 6 1 193 0 14 78 0 6 53 0 5 93 19 24 96 0 5 75 chain 9288 chr5 180915260 + 99723383 99723573 THE1B 368 + 2 199 164123 47 3 0 6 21 31 19 11 12 52 5 4 26 chain 23701 chr5 180915260 + 99738209 99738526 AluY 311 + 0 311 112025 77 2 1 55 3 0 103 10 8 67 chain 3452 chr5 180915260 + 99751595 99751679 MER58A 224 + 45 184 216186 29 6 0 10 22 83 17 chain 30089 chr5 180915260 + 99752407 99752725 AluYb8 318 + 0 318 84533 318 chain 7644 chr5 180915260 + 99759294 99759443 LTR19C 757 + 0 143 173265 35 10 12 16 1 0 27 1 0 4 5 2 11 6 3 33 chain 29381 chr5 180915260 + 99759476 99759783 AluYg6 310 + 0 307 87164 307 chain 30615 chr5 180915260 + 99761053 99761434 LTR12F 595 + 0 549 83178 72 0 167 125 0 1 184 chain 128670 chr5 180915260 + 99773731 99775150 L1PA3long 6157 - 0 1420 28402 922 0 1 497 chain 60551 chr5 180915260 + 99775150 99775804 L1PA3long 6157 + 4088 4742 52453 654 chain 28417 chr5 180915260 + 99780361 99780661 AluYa5 310 - 10 310 91515 300 chain 550857 chr5 180915260 + 99793810 99799998 L1PA3long 6157 - 0 6153 1338 23 0 1 124 5 7 875 0 6 1925 0 1 1710 44 1 701 1 0 300 1 0 479 chain 12615 chr5 180915260 + 99807394 99807548 L1PA7 6471 - 3 153 149788 7 4 0 143 chain 9307 chr5 180915260 + 99818896 99819007 L1PA3long 6157 - 0 336 164035 99 0 225 12 chain 27288 chr5 180915260 + 99833877 99834283 MLT2A1 477 - 83 477 95317 9 10 0 56 7 0 5 1 0 23 13 14 112 7 11 21 0 1 142 chain 21356 chr5 180915260 + 99835599 99835869 AluY 311 + 14 285 122660 118 6 7 146 chain 95115 chr5 180915260 + 99842574 99843747 L1PA7 6471 + 5285 6466 38060 170 0 1 165 1 0 12 0 1 66 0 2 214 7 8 182 0 2 76 0 4 19 0 1 251 3 0 7 chain 177810 chr5 180915260 + 99849945 99851934 L1PA3long 6157 - 0 1960 21181 694 30 0 106 0 1 1159 chain 16711 chr5 180915260 + 99861552 99861893 L1PB1 5432 + 5114 5422 136369 23 1 0 9 1 0 9 8 4 9 2 0 52 2 1 16 1 0 45 1 0 6 36 22 17 8 5 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 4266 chr5 180915260 + 99864888 99864940 L1PA11 4918 - 1714 1770 203677 8 0 4 44 chain 198334 chr5 180915260 + 99864954 99867722 L1PA11 4918 - 404 3509 19332 21 6 5 14 2 0 67 1 0 13 2 1 12 1 4 5 0 3 52 1 5 243 17 19 347 14 15 28 10 3 144 0 4 15 3 4 78 0 1 22 0 15 30 0 2 398 0 1 32 0 1 4 1 0 109 2 299 135 0 4 17 7 8 63 7 11 140 7 8 297 1 2 98 5 4 256 9 14 32 chain 27756 chr5 180915260 + 99870313 99870635 L1PA5 6144 - 3 331 93846 146 0 6 176 chain 464238 chr5 180915260 + 99890638 99895939 L1PA4 6152 - 0 5291 8250 6 0 5 764 5 3 72 21 0 10 0 10 387 0 1 1022 6 13 344 1 0 1201 0 1 574 2 0 7 0 2 139 13 3 727 chain 112687 chr5 180915260 + 99907954 99909188 L1PA2 6032 - 0 1234 33480 1234 chain 43810 chr5 180915260 + 99909188 99909661 L1PA2 6032 + 4276 4749 64438 473 chain 26996 chr5 180915260 + 99910964 99911273 L1PA5 6144 - 7 316 96295 309 chain 51288 chr5 180915260 + 99939381 99940012 L1PA8A 6298 - 25 656 58124 631 chain 88106 chr5 180915260 + 99941742 99942752 LTR5A 1029 + 0 1029 40331 29 0 2 103 0 13 534 0 4 344 chain 114876 chr5 180915260 + 99964077 99965806 L1PA7 6471 - 1 1426 32826 156 0 1 7 2 1 507 327 13 85 0 2 69 0 5 257 1 0 6 3 6 172 0 1 137 chain 54931 chr5 180915260 + 99965806 99966484 L1PA7 6471 + 4347 5031 55752 45 2 3 245 0 1 30 0 4 356 chain 206041 chr5 180915260 + 99975070 99977842 MER61-int 3695 + 907 3694 18789 97 1 0 207 2 3 11 4 7 18 6 7 175 9 0 71 2 1 115 0 5 517 0 1 199 6 0 79 0 1 339 6 5 86 7 8 4 1 0 241 0 2 39 0 1 4 3 1 202 10 12 94 0 16 47 0 1 131 9 10 30 chain 14250 chr5 180915260 + 99981475 99981627 L1HS 6032 + 5880 6032 143717 152 chain 109372 chr5 180915260 + 99992285 99993586 LTR12C 1709 + 0 1709 34349 297 0 1 352 0 278 106 0 125 65 0 4 481 chain 97207 chr5 180915260 + 99995538 99996644 L1P1 4361 - 33 1137 37511 17 1 0 163 1 0 924 chain 139570 chr5 180915260 + 100007046 100008710 L1PA5 6144 + 4459 6138 26209 169 2 1 248 0 1 416 1 0 656 1 5 50 8 20 113 chain 131738 chr5 180915260 + 100023544 100025134 LTR12C 1709 - 0 1709 27691 481 1 5 39 2 1 66 2 0 6 1 0 244 0 118 169 4 3 249 1 2 62 0 1 263 chain 484963 chr5 180915260 + 100035609 100041502 L1PA6 6164 + 362 6162 7560 130 21 22 541 0 1 63 10 3 734 2 1 254 123 0 223 1 0 855 0 1 235 0 1 104 1 0 65 0 16 94 0 2 177 7 9 722 2 3 290 0 1 1039 0 9 191 0 5 9 chain 10147 chr5 180915260 + 100037371 100037487 L1PA6 6164 + 1440 1556 159019 116 chain 90749 chr5 180915260 + 100051304 100052840 L1PA13 3608 - 109 1440 39374 7 3 0 26 1 0 18 2 0 5 40 38 9 2 0 5 2 0 25 3 5 26 1 0 11 1 7 43 2 0 99 0 2 13 1 0 28 1 0 25 0 1 199 7 8 85 209 11 385 1 0 168 6 5 77 chain 112553 chr5 180915260 + 100105350 100106580 L1PA3long 6157 + 4931 6157 33514 696 4 0 530 chain 88423 chr5 180915260 + 100110348 100111354 LTR13 1007 + 0 1007 40215 670 0 1 336 chain 195894 chr5 180915260 + 100119516 100123251 L1PA7 6471 + 4077 6467 19507 224 0 10 358 0 8 683 1368 0 261 0 3 84 1 2 427 1 0 62 8 12 248 2 0 8 chain 103061 chr5 180915260 + 100120896 100122138 SVA_A 1864 + 25 1864 35973 514 0 558 47 1 0 21 3 0 61 1 38 16 38 47 490 3 0 47 chain 35647 chr5 180915260 + 100158373 100159203 MER41A 554 + 0 529 75343 83 8 10 73 335 27 276 10 15 45 chain 21975 chr5 180915260 + 100158574 100158835 AluY 311 + 21 283 120332 111 1 2 149 chain 3148 chr5 180915260 + 100171860 100171897 MIR 256 - 15 52 221956 37 chain 24164 chr5 180915260 + 100177062 100177415 MER51B 395 + 0 395 109408 39 13 0 72 0 56 59 26 25 144 chain 37935 chr5 180915260 + 100205552 100205996 L1PA5 6144 - 3 444 72227 6 4 0 140 0 1 294 chain 117098 chr5 180915260 + 100217701 100219276 THE1A-int 1579 + 0 1579 32093 430 18 15 188 48 56 306 14 8 107 1 5 458 0 1 5 chain 16765 chr5 180915260 + 100228459 100228704 L1PA8 5853 + 5609 5853 136212 68 1 0 14 1 0 17 0 1 31 2 1 22 1 0 66 7 9 15 chain 29910 chr5 180915260 + 100243992 100244334 L1PA4 6152 - 9 346 85065 147 1 0 74 4 0 116 chain 188843 chr5 180915260 + 100251718 100253939 L1PA5 6144 - 12 2483 20162 101 1 0 349 15 0 388 1 0 106 0 3 267 3 1 264 5 6 609 0 1 63 0 264 49 chain 36806 chr5 180915260 + 100257529 100258015 L1PBa 3878 - 145 645 73795 17 2 1 127 1 0 9 0 1 123 0 1 30 0 6 62 0 8 115 chain 519562 chr5 180915260 + 100265794 100271932 L1PA5 6144 - 0 6144 5206 824 6 8 18 7 8 143 1 0 1298 0 1 903 4 0 163 0 2 393 0 4 636 0 1 382 0 7 182 9 0 333 17 0 7 1 18 80 0 1 565 12 13 154 chain 9508 chr5 180915260 + 100291785 100291964 MER30 238 - 0 188 163027 48 3 0 22 0 1 25 5 4 10 26 38 40 chain 85753 chr5 180915260 + 100313327 100314329 L1PA4 6152 - 0 1007 41246 457 8 0 9 1 9 150 0 1 205 0 1 4 0 1 12 0 2 156 chain 83366 chr5 180915260 + 100318752 100319724 LTR5_Hs 974 - 0 974 42170 194 0 19 218 4 5 283 18 0 255 chain 7578 chr5 180915260 + 100319725 100319833 MER41A 554 - 443 554 173680 14 5 9 38 1 0 50 chain 291801 chr5 180915260 + 100321655 100325494 HERVH-int 3825 - 0 3825 13918 225 0 2 260 8 218 39 9 11 923 0 4 282 0 1 144 8 35 900 0 3 13 23 26 40 2 1 26 17 68 24 312 0 10 1 0 38 5 0 480 0 2 50 chain 10523 chr5 180915260 + 100324663 100324910 HERVH-int 3825 - 3245 3364 153941 10 1 0 38 127 0 71 chain 6185 chr5 180915260 + 100324719 100324788 HERVH-int 3825 - 3295 3364 183700 69 chain 26975 chr5 180915260 + 100325496 100325928 LTR7 482 - 0 482 96353 176 0 1 9 0 31 42 1 2 10 25 86 19 49 5 101 chain 11237 chr5 180915260 + 100341907 100342326 LTR5B 1012 - 14 433 48372 419 chain 145442 chr5 180915260 + 100342326 100343966 L1PA4 6152 + 4487 6138 25266 147 1 7 460 0 2 111 0 1 793 0 2 128 chain 14455 chr5 180915260 + 100343980 100344519 LTR5B 1012 - 449 1000 48372 75 1 0 76 2 1 121 28 28 17 0 1 102 1 14 116 chain 225576 chr5 180915260 + 100355692 100358175 L1PA3long 6157 + 3674 6157 17552 2483 chain 79951 chr5 180915260 + 100375261 100376208 L1PA7 6471 + 5511 6458 43618 112 0 1 684 1 0 150 chain 27959 chr5 180915260 + 100389387 100389681 AluYa5 310 + 16 310 93135 294 chain 495006 chr5 180915260 + 100391463 100397101 L1PA4 6152 - 1 5634 7121 853 1 0 1359 0 1 1743 0 1 833 0 1 18 4 1 387 0 4 237 16 9 128 1 0 58 chain 361597 chr5 180915260 + 100444158 100448104 L1PA2 6032 - 5 3951 11325 3732 0 1 103 1 0 110 chain 54954 chr5 180915260 + 100475219 100475828 L1PA4 6152 - 880 1490 55618 237 1 2 371 chain 72133 chr5 180915260 + 100475828 100476670 L1PA4 6152 + 5277 6152 47416 22 1 2 96 1 25 586 1 4 129 0 5 6 chain 111755 chr5 180915260 + 100498566 100499997 L1P2 5180 + 3 1429 33740 60 1 2 79 7 6 44 1 0 53 3 2 266 1 0 272 1 0 6 1 0 7 0 2 529 12 10 88 chain 394862 chr5 180915260 + 100500000 100504698 L1PA6 6164 + 1438 6161 10284 162 0 1 726 1 0 262 0 12 444 1 2 142 0 1 77 0 1 4 0 3 62 2 1 836 0 2 186 0 4 572 2 1 356 0 1 109 0 2 559 8 11 172 3 0 12 chain 543155 chr5 180915260 + 100515834 100521851 L1PA2 6032 + 0 6028 2318 257 1 0 440 0 7 992 14 0 356 0 2 64 0 1 737 0 4 704 0 4 397 1 0 380 0 1 1428 0 8 246 chain 36386 chr5 180915260 + 100533289 100533794 L1PA8 5853 - 3 500 74380 90 1 0 19 2 1 47 4 3 9 1 0 70 13 11 38 1 0 47 1 0 162 chain 118787 chr5 180915260 + 100539888 100541437 THE1A-int 1579 + 2 1560 31498 190 0 3 410 9 11 28 1 4 4 1 0 4 0 1 46 1 0 473 3 4 126 0 1 253 chain 4664 chr5 180915260 + 100541997 100542070 THE1A 353 + 275 340 198917 24 13 5 36 chain 141159 chr5 180915260 + 100570980 100572675 L1PA7 6471 - 2 1702 25961 9 0 2 75 4 5 62 0 1 33 0 1 40 0 3 615 3 0 854 chain 7016 chr5 180915260 + 100601638 100601724 MER4E1 777 - 28 113 177355 62 1 0 23 chain 32332 chr5 180915260 + 100619625 100620007 L1PA7 6471 - 121 504 80297 64 1 2 317 chain 58695 chr5 180915260 + 100625201 100625835 L1PA3long 6157 - 0 634 53583 634 chain 76220 chr5 180915260 + 100625835 100626663 L1PA3long 6157 + 4697 5525 45353 828 chain 3512 chr5 180915260 + 100638213 100638254 L1PA2 6032 + 4187 4228 215180 41 chain 166561 chr5 180915260 + 100638255 100640050 L1PA2 6032 + 4233 6028 22452 1795 chain 29384 chr5 180915260 + 100650943 100651345 LTR7 482 + 0 482 87146 69 8 46 109 0 1 24 1 31 34 0 10 41 1 2 115 chain 241281 chr5 180915260 + 100651347 100654648 HERVH-int 3825 + 215 3825 16707 118 2 1 159 3 111 14 1 0 13 3 0 14 14 11 30 2 0 5 7 6 24 29 8 34 0 2 13 0 3 340 0 1 104 15 0 155 138 131 73 2 5 189 0 1 127 2 0 102 0 1 82 5 10 12 10 8 21 6 10 103 1 0 328 1 0 4 0 1 249 0 8 223 2 22 29 8 218 15 6 0 5 3 9 231 0 2 225 chain 2288 chr5 180915260 + 100656085 100656110 LTR7 482 + 264 289 235500 25 chain 9662 chr5 180915260 + 100662929 100663065 L1PB4 2604 + 2442 2570 162286 58 8 0 34 0 1 17 1 0 18 chain 78422 chr5 180915260 + 100711072 100711990 L1PA5 6144 - 2 931 44306 7 4 0 322 0 2 274 0 12 237 0 1 74 chain 33927 chr5 180915260 + 100717674 100718122 THE1B-int 1605 - 1103 1578 77733 42 5 30 160 3 5 238 chain 4592 chr5 180915260 + 100724853 100724911 MLT1A 405 - 38 97 199720 53 0 1 5 chain 541471 chr5 180915260 + 100777763 100783899 L1PA4 6152 + 6 6150 2595 221 0 1 216 7 8 305 1 5 1056 0 1 498 1 2 3831 chain 15730 chr5 180915260 + 100789629 100789846 L1PA8 5853 + 5640 5853 139176 38 6 5 10 1 0 49 1 0 20 1 0 91 chain 6217 chr5 180915260 + 100794441 100794517 MADE1 96 + 4 96 183432 25 0 16 51 chain 8531 chr5 180915260 + 100832501 100832682 MSTA 426 + 0 188 168125 48 14 8 43 8 14 16 25 32 27 chain 8817 chr5 180915260 + 100842268 100842568 LTR12C 1709 + 677 976 166572 12 78 0 45 7 85 18 1 0 46 74 74 19 chain 70751 chr5 180915260 + 100845972 100846857 L1PA7 6471 - 6 899 48040 144 13 14 185 1 6 322 0 1 108 0 4 58 3 0 51 chain 56053 chr5 180915260 + 100848314 100849118 MER11B 1079 + 0 785 55088 46 5 8 43 0 1 439 73 58 146 10 0 25 1 3 16 chain 354424 chr5 180915260 + 100860449 100864603 L1PA5 6144 - 4 4145 11494 180 1 2 312 0 1 154 0 1 170 6 8 114 0 1 538 1 2 543 27 9 334 0 1 599 0 1 526 0 1 375 2 1 166 5 0 16 0 1 85 chain 169146 chr5 180915260 + 100864613 100866579 L1PA5 6144 + 0 1979 22158 234 4 5 201 0 11 249 1 2 1277 chain 146089 chr5 180915260 + 100887949 100889637 L1PA4 6152 - 3778 5460 25100 934 10 0 178 0 1 79 0 3 487 chain 328452 chr5 180915260 + 100889637 100893401 L1PA4 6152 + 2358 6133 12260 281 2 0 463 0 1 330 8 17 245 8 6 639 0 3 447 0 1 100 0 1 1241 chain 131392 chr5 180915260 + 100901542 100903317 L1P3 4156 - 19 4156 27780 24 9 6 16 1 2 77 6 9 50 1 0 4 0 1 122 1 0 251 25 29 401 0 1 4 1 0 80 0 2 54 4 7 14 1 0 4 0 1 166 1 0 50 2 0 11 0 2357 23 5 6 43 1 0 60 14 13 249 chain 24939 chr5 180915260 + 100905552 100905829 L1PA3long 6157 - 0 277 105117 277 chain 48416 chr5 180915260 + 100905829 100906356 L1PA3long 6157 + 5339 5866 60167 527 chain 41911 chr5 180915260 + 100916747 100917208 L1PA3long 6157 - 5 469 66744 282 0 3 179 chain 9641 chr5 180915260 + 100918616 100918757 MER30 238 - 42 202 162391 62 8 27 71 chain 193690 chr5 180915260 + 100922851 100925020 L1PA4 6152 + 3830 5996 19711 835 1 0 713 1 0 613 1 0 5 chain 14116 chr5 180915260 + 100925020 100925173 L1PA4 6152 + 5998 6151 144158 153 chain 4943 chr5 180915260 + 100939281 100939750 L1MD1 2063 + 1330 1800 195767 31 94 111 35 266 254 11 3 0 4 1 0 24 chain 29217 chr5 180915260 + 100946249 100946625 THE1C 375 - 0 375 87973 25 1 0 165 1 0 127 1 2 56 chain 20393 chr5 180915260 + 100965475 100965732 AluY 311 + 39 296 125914 74 6 5 110 0 1 67 chain 73709 chr5 180915260 + 100981812 100982658 L1P2 5180 - 2352 3198 46668 75 0 3 423 3 0 345 chain 8950 chr5 180915260 + 100982658 100982771 L1PA6 6164 + 6048 6159 165872 106 2 0 5 chain 509404 chr5 180915260 + 101045972 101052109 L1PA6 6164 - 15 6160 6214 134 1 0 107 1 0 583 5 10 724 0 1 905 1 0 383 9 11 18 0 3 80 0 1 412 0 1 406 1 2 34 11 0 292 0 1 1084 1 0 42 8 0 165 21 34 149 1 0 48 0 2 278 0 2 233 chain 25006 chr5 180915260 + 101052121 101052581 MER49 923 - 422 923 104752 87 24 21 57 9 1 45 0 3 93 0 22 46 74 101 25 chain 29295 chr5 180915260 + 101056709 101057016 AluYb8 318 + 0 307 87595 307 chain 4667 chr5 180915260 + 101070889 101070959 Kanga1a 723 - 32 100 198898 21 0 1 4 1 0 6 2 0 36 chain 27837 chr5 180915260 + 101074402 101074707 AluYg6 310 + 0 305 93572 305 chain 9238 chr5 180915260 + 101123354 101123596 MSTA 426 + 137 402 164357 55 70 71 27 33 55 57 chain 11975 chr5 180915260 + 101123641 101123791 MSTA-int 1630 + 20 170 152308 150 chain 30199 chr5 180915260 + 101123808 101124236 LTR71A 459 - 0 459 84194 182 20 38 115 11 24 100 chain 11524 chr5 180915260 + 101131655 101131801 L1P3 4156 + 3816 3962 154196 146 chain 51317 chr5 180915260 + 101133125 101133736 L1PA7 6471 + 5856 6467 58093 611 chain 4472 chr5 180915260 + 101142798 101142891 MER52A 1651 + 785 913 201102 5 1 0 22 2 3 25 16 51 22 chain 13833 chr5 180915260 + 101143595 101143763 L1PA10 4194 - 2906 3074 145120 168 chain 98435 chr5 180915260 + 101143763 101144994 L1PA8 5853 + 4629 5853 37179 349 1 0 21 1 4 6 5 0 42 0 4 509 1 0 46 2 0 72 3 1 5 1 0 48 6 5 19 1 0 93 chain 8491 chr5 180915260 + 101156933 101157086 MSTD 398 - 1 147 168342 35 10 1 28 9 10 38 5 6 28 chain 39298 chr5 180915260 + 101160132 101161055 L1PB1 5432 - 2 853 70331 4 1 0 12 5 1 9 1 0 13 1 0 18 8 7 20 2 0 14 1 0 8 2 0 16 25 12 15 1 0 37 26 24 52 2 0 9 7 3 12 3 2 4 1 0 24 3 0 5 165 126 50 7 15 166 0 3 13 6 5 110 4 1 41 chain 57157 chr5 180915260 + 101161066 101161830 L1PB1 5432 + 3782 4554 54430 180 8 9 164 0 7 226 10 11 108 1 0 67 chain 52684 chr5 180915260 + 101162624 101163205 L1PA3long 6157 + 5571 6152 57197 581 chain 55287 chr5 180915260 + 101167409 101168159 L1PA8 5853 - 0 745 55533 91 3 2 19 3 2 49 10 8 72 2 0 46 1 0 36 7 8 205 1 0 136 9 11 60 chain 80093 chr5 180915260 + 101190045 101190973 L1PA7 6471 + 5530 6463 43542 84 1 4 94 0 1 607 0 1 142 chain 21828 chr5 180915260 + 101193639 101194017 THE1C 375 - 0 375 120907 123 88 85 167 chain 2862 chr5 180915260 + 101215476 101215527 MER67C 710 + 84 140 227655 27 7 12 17 chain 323200 chr5 180915260 + 101222963 101226927 L1PA6 6164 - 8 4007 12467 163 0 2 6 2 0 365 5 6 23 0 2 235 40 39 77 0 1 76 0 1 234 1 13 675 2 0 143 1 6 106 0 2 616 1 0 175 0 1 314 0 1 98 1 0 4 0 1 143 0 13 289 0 1 114 0 2 46 3 0 6 chain 3526 chr5 180915260 + 101229783 101229822 LTR38B 592 - 61 100 214948 39 chain 11864 chr5 180915260 + 101246917 101247165 L1PA14 3548 - 66 296 152770 17 1 0 10 6 0 18 4 1 19 1 0 15 5 4 5 1 0 15 4 2 33 16 11 35 0 2 43 chain 111933 chr5 180915260 + 101248553 101249791 L1PA3long 6157 - 0 1239 33682 253 0 1 985 chain 5440 chr5 180915260 + 101249791 101249852 L1PA3long 6157 + 4892 4953 190612 61 chain 333328 chr5 180915260 + 101256821 101260521 L1PA3long 6157 + 2453 6157 12074 735 0 1 498 1 2 484 0 1 617 1 2 1364 chain 4181 chr5 180915260 + 101260551 101260597 LTR56 451 - 177 223 204817 46 chain 92156 chr5 180915260 + 101263098 101264104 L1PA3long 6157 + 5137 6143 38918 1006 chain 30808 chr5 180915260 + 101290199 101290823 MLT2A1 477 - 0 477 82850 40 6 0 9 183 45 89 0 1 96 3 2 17 10 7 171 chain 65513 chr5 180915260 + 101290823 101291635 HERVL-int 5654 - 0 804 50333 32 13 1 64 0 5 126 4 3 573 chain 143326 chr5 180915260 + 101297045 101298715 LTR12C 1709 - 0 1709 25592 481 0 4 107 2 0 6 1 0 234 0 40 729 6 4 104 chain 114667 chr5 180915260 + 101303005 101304405 L1PA7 6471 - 3 1399 32894 7 4 0 323 1 2 194 0 1 238 3 1 630 chain 15485 chr5 180915260 + 101311405 101311672 L1PB2 3958 - 144 410 139939 36 5 4 5 0 3 5 3 0 7 2 0 42 28 31 64 1 0 69 chain 24664 chr5 180915260 + 101315184 101315551 THE1B 368 + 0 368 106647 13 2 0 24 1 6 126 20 19 103 3 0 11 0 2 64 chain 9316 chr5 180915260 + 101334376 101334520 L1MB1 2102 - 102 242 163977 57 3 1 49 1 0 18 1 0 15 chain 5892 chr5 180915260 + 101356147 101356215 L1PA2 6032 + 5964 6032 186251 68 chain 341232 chr5 180915260 + 101356215 101360516 L1PA7 6471 + 2166 6468 11862 354 0 2 572 5 9 47 0 4 234 0 4 579 0 1 413 38 12 552 0 2 219 0 1 104 17 17 131 0 1 189 4 1 171 8 9 62 0 9 415 10 14 26 0 1 133 3 0 4 1 0 10 chain 37099 chr5 180915260 + 101379734 101380197 L1PA7 6471 + 3871 4338 73385 133 7 6 200 0 2 104 0 3 19 chain 172877 chr5 180915260 + 101380838 101383289 L1PA7 6471 + 4346 6464 21722 130 0 1 74 333 0 69 4 0 52 0 2 50 2 1 187 1 2 111 0 1 300 6 7 288 1 0 708 0 1 86 7 8 35 2 0 5 chain 42420 chr5 180915260 + 101393410 101393881 L1PA4 6152 + 5680 6151 66116 471 chain 71128 chr5 180915260 + 101428027 101428948 THE1A-int 1579 - 636 1579 47876 88 8 9 180 15 16 86 0 1 185 0 6 259 0 13 100 chain 76074 chr5 180915260 + 101434234 101435212 MER11A 1151 - 4 1151 45432 10 1 2 20 0 4 115 0 11 17 0 1 49 0 1 58 20 54 18 0 2 150 1 0 37 0 27 244 0 2 29 6 2 111 1 92 91 chain 4649 chr5 180915260 + 101444378 101444461 MADE1 96 + 0 96 199066 16 5 18 5 2 0 6 0 3 7 1 0 41 chain 231933 chr5 180915260 + 101446555 101449216 L1PA5 6144 - 13 2680 17202 148 0 2 566 0 1 22 1 4 94 1 0 1770 5 6 54 chain 100327 chr5 180915260 + 101449216 101450334 L1PA5 6144 + 2358 3476 36650 1118 chain 27582 chr5 180915260 + 101452933 101453288 THE1A 353 + 0 353 94399 82 9 8 20 1 0 243 chain 565019 chr5 180915260 + 101467060 101473089 L1HS 6032 + 0 6029 206 6029 chain 16913 chr5 180915260 + 101473348 101473540 L1PA4 6152 + 5960 6152 135816 192 chain 4148 chr5 180915260 + 101481975 101482019 MLT1B 390 - 36 80 205264 44 chain 98740 chr5 180915260 + 101483834 101484976 L1PA6 6164 + 5012 6162 37091 883 0 12 247 4 0 8 chain 123838 chr5 180915260 + 101490462 101492133 LTR12C 1709 + 0 1709 29756 278 0 1 14 0 1 170 9 7 28 1 0 4 2 3 224 43 0 101 0 42 193 1 0 5 0 47 90 27 20 276 1 0 50 0 2 65 5 4 84 chain 29192 chr5 180915260 + 101494485 101495035 L1PA13 3608 + 3024 3548 88085 108 8 7 21 1 0 43 8 13 51 8 6 62 1 0 56 8 5 41 21 17 13 1 0 18 27 19 14 28 18 12 chain 248718 chr5 180915260 + 101500000 101502802 L1PA4 6152 + 3328 6138 16327 788 0 2 49 0 1 297 0 1 838 0 4 830 chain 28659 chr5 180915260 + 101512761 101513061 AluYa5 310 - 10 310 90488 300 chain 37771 chr5 180915260 + 101516492 101516984 LTR10F 562 - 0 562 72459 330 14 0 41 1 85 106 chain 79514 chr5 180915260 + 101522809 101525172 L1PA6 6164 - 5 4123 12013 5 2 0 313 5 6 179 0 1 256 3 5 100 0 1 184 11 12 407 10 11 9 33 0 665 0 1783 181 chain 496385 chr5 180915260 + 101525187 101530511 L1HS 6032 + 2 6032 7048 4227 0 4 725 0 702 372 chain 74870 chr5 180915260 + 101530550 101532775 L1PA6 6164 - 4123 6164 12013 593 1 0 98 4 8 103 0 1 295 141 0 3 54 0 4 0 1 98 2 0 13 0 17 240 1 0 118 8 0 449 chain 11847 chr5 180915260 + 101531645 101531785 L1PA6 6164 - 6005 6145 146502 140 chain 74463 chr5 180915260 + 101538752 101539677 L1PA10 4194 + 3224 4150 46292 872 0 4 16 4 1 33 chain 40519 chr5 180915260 + 101542504 101542933 L1PA2 6032 - 2325 2754 68565 429 chain 214496 chr5 180915260 + 101542933 101545273 L1PA2 6032 + 3689 6030 18193 476 0 2 416 1 0 1447 chain 143282 chr5 180915260 + 101555377 101557508 L1PB1 5432 - 16 2121 25600 4 1 0 8 1 0 13 1 0 23 1 0 22 73 56 9 1 0 44 9 8 10 1 0 7 1 0 44 18 12 12 3 2 6 1 0 22 13 11 180 0 1 109 0 1 44 6 19 110 5 6 6 2 0 26 0 1 4 5 4 46 0 1 225 0 1 14 10 16 135 0 4 414 17 0 425 chain 89251 chr5 180915260 + 101579913 101581228 L1M1 2793 + 1126 2697 39909 53 1 0 72 4 0 18 7 0 93 0 2 5 1 0 370 0 4 77 0 3 187 0 4 88 0 3 10 58 310 11 1 0 109 11 11 14 6 11 47 1 0 46 1 0 11 1 0 12 chain 19976 chr5 180915260 + 101616270 101616612 THE1D 372 - 0 372 127221 32 1 0 28 10 40 23 5 11 12 34 38 133 9 0 55 chain 12534 chr5 180915260 + 101640636 101640884 MER1B 344 - 5 251 150103 53 29 23 5 0 1 4 1 0 54 12 22 19 14 7 17 3 4 37 chain 116106 chr5 180915260 + 101665094 101666367 L1PA3long 6157 + 4884 6157 32415 1273 chain 21485 chr5 180915260 + 101673512 101673777 MER41C 542 - 4 269 122203 265 chain 471836 chr5 180915260 + 101687025 101692696 L1PA6 6164 + 0 6156 7975 375 0 1 234 0 1 178 0 17 328 19 20 100 1 0 497 0 1 508 0 1 64 5 0 316 0 9 144 0 1 394 0 1 516 2 0 1062 0 15 115 9 8 335 2 449 313 19 18 135 chain 194225 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chain 98099 chr5 180915260 + 101887273 101888497 L1PA7 6471 - 6 1232 37255 6 2 0 136 0 18 7 17 0 198 6 7 4 1 0 385 0 1 87 0 2 375 chain 96158 chr5 180915260 + 101894682 101896002 L1PA11 4918 + 3219 4530 37780 241 0 4 511 7 3 76 1 0 146 7 9 124 0 4 58 1 0 4 9 8 68 2 0 12 5 4 17 4 0 12 5 0 10 chain 3549 chr5 180915260 + 101903805 101903849 MADE1 96 + 49 96 214554 22 0 3 22 chain 20116 chr5 180915260 + 101905546 101905814 HERVL-int 5654 - 0 263 126778 98 7 6 117 4 0 42 chain 14941 chr5 180915260 + 101927739 101927933 THE1B 368 - 0 193 141500 72 1 0 82 0 1 19 1 0 19 chain 59404 chr5 180915260 + 101939366 101940294 L1PREC2 3366 - 360 1245 53175 35 22 8 11 3 0 28 70 57 13 3 0 4 1 0 11 1 0 33 1 0 49 23 21 73 7 3 182 1 0 357 chain 25856 chr5 180915260 + 101942653 101942951 AluY 311 + 3 302 100623 129 0 1 169 chain 171254 chr5 180915260 + 101947878 101950599 L1PA13 3608 - 705 2965 21907 574 1 0 145 105 0 45 0 1 65 0 4 171 0 1 30 1 0 6 0 1 417 9 10 12 378 6 22 0 2 5 9 7 76 0 10 125 1 0 60 0 1 464 chain 49300 chr5 180915260 + 101966660 101967528 L1PB1 5432 - 12 821 59517 16 1 0 13 1 0 21 1 0 24 2 0 14 21 18 17 3 1 15 1 0 21 7 5 18 1 0 16 2 1 47 8 6 9 4 0 11 1 0 9 1 0 24 1 0 10 25 2 49 2 1 8 0 1 228 2 10 11 9 0 89 13 7 72 5 0 15 chain 93699 chr5 180915260 + 101967863 101970496 L1PB 1623 + 121 1453 38439 48 4 1 17 5 6 7 0 5 64 4 3 126 1274 1 54 0 4 28 1 0 23 5 7 101 14 7 234 1 3 138 0 9 282 58 20 137 1 0 7 chain 22451 chr5 180915260 + 101968162 101968432 L1PA5 6144 - 826 1094 117874 147 3 1 120 chain 72582 chr5 180915260 + 101968432 101969239 L1PA5 6144 + 5324 6131 47228 807 chain 20027 chr5 180915260 + 101976371 101976591 L1PA2 6032 - 249 469 127050 220 chain 27751 chr5 180915260 + 101983421 101983888 L1MA2 4263 + 3590 4047 93863 72 1 0 61 6 3 70 13 10 98 74 71 72 chain 550445 chr5 180915260 + 102006933 102012964 L1PA2 6032 + 2 6032 1385 254 1 0 161 0 1 162 0 4 742 0 1 4334 6 0 371 chain 12257 chr5 180915260 + 102018678 102018815 LTR2B 499 - 45 182 151172 137 chain 544937 chr5 180915260 + 102018823 102025277 L1PA4 6152 - 6 6152 2080 1874 0 8 748 0 1 1083 0 3 593 316 0 79 4 0 192 0 1 132 1 0 188 1 0 499 0 1 744 chain 3593 chr5 180915260 + 102047270 102047318 LTR82A 830 + 0 48 213789 48 chain 19867 chr5 180915260 + 102088126 102088771 LTR12C 1709 + 871 1463 127602 241 382 329 22 chain 2741 chr5 180915260 + 102088397 102088488 LTR12C 1709 + 904 1037 164622 23 33 34 15 0 41 20 chain 165461 chr5 180915260 + 102103914 102106577 L1MA3 4352 - 0 2638 22597 14 9 6 4 1 0 14 2 1 25 8 6 21 3 1 16 34 40 21 1 5 9 5 0 28 102 88 255 12 20 63 50 31 22 0 2 218 0 1 38 19 16 452 24 25 328 8 0 55 65 68 20 2 1 41 14 0 84 1 0 139 4 7 298 1 21 72 1 2 60 chain 28397 chr5 180915260 + 102115209 102115584 MLT2A1 477 + 0 385 91598 15 0 1 42 0 10 74 0 1 25 1 5 82 7 0 68 0 1 61 chain 4750 chr5 180915260 + 102118920 102118999 MER53 195 + 5 78 197915 23 11 5 45 chain 24447 chr5 180915260 + 102146263 102146550 AluSp 311 + 11 300 107821 95 0 2 192 chain 22439 chr5 180915260 + 102163371 102163608 AluYb8 318 - 0 237 118306 237 chain 25906 chr5 180915260 + 102177974 102178301 THE1B 368 + 0 341 100404 44 0 15 110 1 0 172 chain 9035 chr5 180915260 + 102214963 102215086 Tigger3b 1229 + 790 925 165418 6 0 1 65 4 15 48 chain 139196 chr5 180915260 + 102217818 102219679 L1PB1 5432 - 329 2220 26264 68 5 25 8 1 0 141 1 0 23 6 5 27 15 13 88 9 11 47 0 1 16 0 1 405 0 2 260 1 0 63 0 6 169 1 4 330 0 1 4 1 0 148 8 9 16 chain 112570 chr5 180915260 + 102242957 102244183 L1PA2 6032 - 283 1509 33510 1226 chain 21998 chr5 180915260 + 102244183 102244434 L1PA2 6032 + 5781 6032 120239 251 chain 16333 chr5 180915260 + 102261797 102261966 AluYb8 318 - 18 187 137393 169 chain 14885 chr5 180915260 + 102265474 102265683 MER30 238 + 0 231 141671 13 6 23 4 1 0 68 7 13 110 chain 12410 chr5 180915260 + 102283115 102283374 L1PB1 5432 + 5192 5427 150600 28 2 1 16 1 0 44 1 0 15 53 35 15 2 0 24 1 0 21 1 4 9 1 0 18 2 0 5 chain 42113 chr5 180915260 + 102304445 102304947 L1PA7 6471 + 5961 6465 66486 10 0 1 209 1 2 282 chain 21314 chr5 180915260 + 102322357 102322719 THE1B 368 + 0 368 122824 107 9 10 60 60 66 63 7 6 56 chain 116187 chr5 180915260 + 102347265 102349319 L1MA2 4263 - 150 1890 32379 9 1 0 34 1 2 10 7 0 93 84 82 47 9 12 18 12 9 143 1 0 68 7 2 456 311 0 100 0 1 122 5 9 11 0 3 49 0 1 53 12 11 122 4 2 20 1 2 28 0 1 36 0 4 20 1 0 81 0 1 78 chain 3067 chr5 180915260 + 102370094 102370144 MER52A 1651 - 836 884 223630 10 1 0 15 2 1 22 chain 7441 chr5 180915260 + 102374472 102374551 L1PA3long 6157 + 6071 6150 174513 79 chain 550719 chr5 180915260 + 102382456 102388473 L1PA2 6032 + 12 6032 1350 372 0 1 356 0 1 2874 0 1 2415 chain 149107 chr5 180915260 + 102390101 102391799 L1PA4 6152 - 9 1704 24738 150 1 0 521 1 0 171 1 0 853 chain 25213 chr5 180915260 + 102393424 102393760 THE1B 368 - 16 368 103671 135 0 2 38 0 2 7 3 0 104 5 20 44 chain 100147 chr5 180915260 + 102407608 102409218 L1PA8 5853 - 0 1711 36732 93 9 8 11 3 2 49 2 0 11 1 0 13 0 3 55 2 0 44 1 0 65 92 145 14 139 194 58 6 9 69 1 0 656 0 1 6 1 0 7 5 0 152 8 9 37 chain 2956 chr5 180915260 + 102408021 102408059 L1PA8 5853 + 5302 5340 142515 38 chain 10578 chr5 180915260 + 102408073 102408209 L1PA8 5853 + 5354 5496 142515 40 1 7 95 chain 6109 chr5 180915260 + 102438606 102438689 MER119 576 + 375 464 184353 32 0 6 51 chain 23477 chr5 180915260 + 102467977 102468260 AluSc8 310 + 14 295 113229 120 3 1 160 chain 27929 chr5 180915260 + 102476271 102476561 AluYd8 298 + 0 290 93240 290 chain 118373 chr5 180915260 + 102476868 102478283 LTR12C 1709 - 0 1687 31655 313 0 114 54 0 4 107 2 0 6 1 0 184 0 160 460 5 14 7 5 0 27 6 0 45 1 0 192 chain 8895 chr5 180915260 + 102495476 102495756 L1MA8 2339 - 77 330 166160 6 1 0 37 23 18 41 100 78 31 6 7 35 chain 92696 chr5 180915260 + 102496662 102497713 L1PA5 6144 - 0 1055 38749 11 3 1 144 1 0 604 0 7 288 chain 58770 chr5 180915260 + 102540563 102541253 L1PA6 6164 - 2 716 53540 9 0 2 157 1 2 31 3 0 109 0 14 288 3 13 89 chain 48064 chr5 180915260 + 102549900 102550633 L1PA15 4387 + 3636 4356 60434 177 1 7 58 0 1 9 7 5 13 0 1 25 0 2 80 0 2 88 2 1 25 1 0 55 1 0 23 4 0 8 2 1 50 6 3 42 43 31 13 chain 100396 chr5 180915260 + 102554684 102555901 L1PA7 6471 - 20 1229 36656 123 0 5 329 17 1 282 16 16 69 0 1 4 1 0 45 0 1 20 0 1 33 0 1 278 chain 25514 chr5 180915260 + 102560650 102560989 MER57A1 433 + 15 362 102168 209 4 11 51 1 2 74 chain 14349 chr5 180915260 + 102642088 102642401 MER47B 469 + 62 426 143384 62 118 169 133 chain 235344 chr5 180915260 + 102644806 102647422 L1PA4 6152 - 0 2620 17005 677 0 1 609 1 0 513 0 4 816 chain 4332 chr5 180915260 + 102668647 102668696 L1MB2 1706 + 1637 1686 202800 49 chain 2976 chr5 180915260 + 102688908 102688942 MLT1H1 527 + 23 57 225514 34 chain 27802 chr5 180915260 + 102698346 102698689 L1PA7 6471 - 2 343 93682 12 2 1 147 1 0 181 chain 29249 chr5 180915260 + 102702619 102703243 LTR18B 584 - 27 584 87794 32 6 0 15 15 10 40 87 60 23 21 6 41 0 4 11 12 0 54 2 0 22 26 39 8 18 0 97 4 5 90 chain 457407 chr5 180915260 + 102715543 102721615 L1PA7 6471 - 11 5754 8494 126 8 7 4 0 1 276 0 1 111 0 1 233 0 2 84 3 0 133 4 3 23 0 1 57 0 1 344 0 2 103 9 0 242 13 0 24 2 4 156 0 2 420 0 1 96 30 10 162 1 2 9 4 0 46 1 0 159 322 0 61 0 4 52 32 21 229 4 7 110 1 2 28 0 4 107 2 0 305 8 0 43 4 0 37 0 18 242 2 1 877 0 8 179 12 11 201 0 21 305 2 0 24 chain 32173 chr5 180915260 + 102723365 102723931 L1PA15 4387 - 21 573 80574 10 1 0 24 10 5 12 3 1 32 1 0 5 15 12 48 2 1 12 4 0 19 1 0 55 1 0 26 1 0 88 0 2 17 3 0 5 7 10 49 1 0 4 0 1 23 13 17 74 chain 2803 chr5 180915260 + 102743004 102743089 LTR16A 446 - 101 187 228689 28 42 43 15 chain 7635 chr5 180915260 + 102761432 102761525 MER85 139 + 0 96 173321 60 0 3 33 chain 2879 chr5 180915260 + 102791996 102792029 Tigger2b_Pri 1066 + 970 1003 227396 33 chain 21501 chr5 180915260 + 102796108 102796468 L1MA2 4263 + 3771 4114 122140 38 4 1 11 6 1 41 1 0 41 0 2 42 19 17 82 16 9 49 1 0 9 chain 5398 chr5 180915260 + 102807801 102807863 L1PA8A 6298 - 47 109 191006 62 chain 85169 chr5 180915260 + 102868873 102869932 MER11B 1079 + 27 1079 41460 74 1 0 158 3 0 250 0 1 50 36 35 97 0 1 79 8 2 282 1 3 20 chain 5053 chr5 180915260 + 102928562 102928625 L1MC2 1988 - 1666 1729 194602 63 chain 11752 chr5 180915260 + 102941768 102941928 MSTA 426 - 0 169 153253 109 10 18 22 0 1 19 chain 51216 chr5 180915260 + 102999265 103000000 MER11C 1089 - 0 757 58178 29 6 5 14 0 1 153 0 1 78 11 30 179 27 28 25 12 13 201 chain 29274 chr5 180915260 + 103000000 103000329 MER11B 1079 - 750 1079 87676 329 chain 2692 chr5 180915260 + 103045760 103045822 L1MA9 1812 - 76 135 230314 12 10 8 12 2 1 26 chain 28034 chr5 180915260 + 103057900 103058261 THE1D-int 1627 - 1255 1616 92877 67 1 2 288 1 0 4 chain 3929 chr5 180915260 + 103074393 103074477 MER53 195 + 9 86 208431 47 24 17 13 chain 10116 chr5 180915260 + 103088324 103088819 MLT2D 439 - 8 435 160010 21 283 221 23 34 25 72 3 5 19 6 7 34 chain 6762 chr5 180915260 + 103092146 103092227 MER67D 511 - 383 464 179236 81 chain 15018 chr5 180915260 + 103108403 103108594 MER50 708 + 493 685 141270 10 1 0 12 0 1 52 0 1 116 chain 14209 chr5 180915260 + 103113667 103114606 LTR12D 1347 - 2 846 143848 96 574 497 46 120 34 39 29 97 35 chain 24364 chr5 180915260 + 103132747 103133137 LTR12F 595 - 167 595 108299 36 1 0 141 5 6 30 23 47 11 5 20 26 11 6 44 0 4 57 chain 54685 chr5 180915260 + 103164431 103165091 L1PA8A 6298 + 5631 6291 55916 660 chain 23015 chr5 180915260 + 103191727 103192004 AluY 311 + 24 302 115552 108 0 1 169 chain 43793 chr5 180915260 + 103193925 103194451 L1PA7 6471 - 2 526 64463 5 3 0 212 5 6 301 chain 38959 chr5 180915260 + 103196700 103197225 MLT2A2 560 + 0 560 70791 17 0 4 164 1 24 110 8 5 79 1 12 145 chain 19701 chr5 180915260 + 103212113 103212412 THE1B 368 - 65 368 128096 59 28 30 14 0 1 7 0 2 9 13 12 169 chain 6149 chr5 180915260 + 103238605 103238696 THE1A 353 - 12 93 183994 37 0 2 5 12 0 37 chain 29296 chr5 180915260 + 103239372 103239728 THE1A-int 1579 - 1223 1579 87593 356 chain 50546 chr5 180915260 + 103240082 103240859 L1PA15 4387 + 3524 4252 58616 288 2 0 15 4 0 64 3 1 32 27 8 78 14 0 94 6 5 21 1 0 55 1 0 22 4 0 8 4 3 34 chain 23473 chr5 180915260 + 103275435 103275706 AluSg7 307 - 28 297 113257 147 2 0 122 chain 4767 chr5 180915260 + 103289172 103289298 LTR12C 1709 - 761 890 197735 48 52 56 7 1 0 18 chain 111788 chr5 180915260 + 103301161 103302568 LTR12C 1709 - 0 1708 33727 84 8 7 60 1 0 330 0 4 106 9 6 12 0 1 51 0 1 61 0 278 165 0 1 23 4 1 6 0 3 17 6 5 180 11 12 27 0 1 203 7 27 36 chain 27811 chr5 180915260 + 103321528 103321842 AluYk4 311 + 0 309 93661 126 5 0 183 chain 14989 chr5 180915260 + 103333542 103333705 L1PA2 6032 - 1522 1685 141083 163 chain 139136 chr5 180915260 + 103333705 103335208 L1PA2 6032 + 4528 6031 26272 1503 chain 55069 chr5 180915260 + 103348660 103349350 LTR12 884 - 15 884 55663 472 0 22 13 0 25 49 1 26 91 0 107 64 chain 26075 chr5 180915260 + 103367410 103367812 LTR7 482 + 0 475 99725 67 10 48 65 3 5 39 8 40 11 20 21 179 chain 289632 chr5 180915260 + 103367821 103371348 HERVH-int 3825 + 0 3825 14043 212 0 11 306 1 0 12 1 0 4 0 1 24 1 0 9 2 1 10 4 0 12 6 0 17 0 37 40 4 25 8 1 0 50 1 0 82 0 3 433 0 4 6 3 0 124 9 0 37 2 1 216 4 31 299 0 10 358 1 0 669 27 29 39 8 218 260 0 2 225 chain 24460 chr5 180915260 + 103372605 103373001 LTR7 482 + 0 469 107753 69 6 95 21 51 0 28 0 1 6 0 1 37 6 38 69 1 2 102 chain 3257 chr5 180915260 + 103376184 103376222 MLT2B3 573 + 469 507 219846 38 chain 8301 chr5 180915260 + 103391035 103391139 L1P5 443 - 124 228 169389 104 chain 36389 chr5 180915260 + 103394561 103395019 MER41A 554 - 92 554 74378 53 9 13 396 chain 40365 chr5 180915260 + 103399335 103399785 LTR7 482 - 0 482 68785 187 0 31 51 0 1 212 chain 275745 chr5 180915260 + 103401592 103405729 HERVH-int 3825 - 0 3825 14882 487 8 218 1019 10 15 61 0 10 74 4 3 4 0 1 217 4 31 82 4 3 129 416 69 172 16 1 145 13 14 291 1 0 30 1 0 26 1 0 5 22 1 18 2 1 15 2 0 26 22 0 26 24 0 12 1 0 15 70 0 14 62 0 10 1 0 10 1 0 38 5 0 309 0 11 212 chain 2888 chr5 180915260 + 103405004 103405045 HERVH-int 3825 - 3108 3148 227243 18 2 1 21 chain 40236 chr5 180915260 + 103405731 103406182 LTR7 482 - 0 482 68967 221 0 31 230 chain 552508 chr5 180915260 + 103410063 103416082 L1PA2 6032 - 6 6029 1129 1513 1 0 1672 0 1 24 0 3 2105 0 1 704 chain 20146 chr5 180915260 + 103419247 103419522 L1PA8 5853 + 5582 5853 126689 27 2 0 22 0 1 47 1 0 61 2 1 21 1 0 91 chain 67670 chr5 180915260 + 103439914 103440789 LTR12 884 - 0 884 49376 119 0 8 216 0 2 139 0 22 37 0 1 126 6 5 48 23 0 161 chain 6682 chr5 180915260 + 103484449 103484543 L1P3 4156 + 4010 4107 179815 28 4 7 62 chain 3964 chr5 180915260 + 103509360 103509406 MLT2B3 573 + 527 573 207929 46 chain 8133 chr5 180915260 + 103516744 103516844 HUERS-P3-int 2218 + 1211 1311 170317 100 chain 250120 chr5 180915260 + 103526738 103529516 L1PA4 6152 + 3355 6139 16245 602 0 2 1347 0 4 829 chain 176574 chr5 180915260 + 103693355 103695292 L1PA2 6032 - 0 1956 21297 1092 4 23 841 chain 92483 chr5 180915260 + 103695292 103696281 L1PA2 6032 + 3112 4101 38725 989 chain 12018 chr5 180915260 + 103719438 103719589 L1PA16 3655 - 80 231 152127 151 chain 32377 chr5 180915260 + 103725592 103725977 L1PA7 6471 + 6076 6461 80224 27 0 1 33 1 0 324 chain 37266 chr5 180915260 + 103730746 103731222 L1P2 5180 - 1650 2139 73144 88 0 11 172 9 12 64 1 0 142 chain 45803 chr5 180915260 + 103732813 103733421 L1P2 5180 + 2330 3013 62230 38 0 1 225 2 1 89 1 2 17 1 71 12 0 4 223 chain 173078 chr5 180915260 + 103733450 103735636 L1PA7 6471 + 4287 6469 21700 76 5 6 141 0 1 60 1 0 7 0 1 16 11 12 113 0 1 234 1 0 24 1 0 290 0 1 27 0 1 55 3 4 135 0 1 4 14 1 123 1 4 266 0 1 247 1 0 175 1 0 7 1 2 146 chain 28423 chr5 180915260 + 103740203 103740506 AluYa5 310 - 5 309 91494 134 0 1 169 chain 28531 chr5 180915260 + 103772347 103772718 MLT2A1 477 + 0 384 91050 4 1 0 12 0 2 31 0 11 108 3 0 194 0 4 18 chain 552930 chr5 180915260 + 103782076 103788107 L1PA2 6032 - 0 6032 1073 1574 0 1 4457 chain 97832 chr5 180915260 + 103816338 103817562 L1PA7 6471 - 6 1242 37324 11 3 0 307 11 10 218 13 22 219 0 3 42 0 1 8 0 3 392 chain 138406 chr5 180915260 + 103825694 103827255 L1PA3long 6157 + 4594 6157 26411 48 0 5 660 6 8 570 5 0 272 chain 2012 chr5 180915260 + 103841454 103841478 L1MC3 1789 - 955 979 238504 24 chain 2638 chr5 180915260 + 103841929 103841957 L1MC3 1789 - 1424 1452 231179 28 chain 568026 chr5 180915260 + 103854288 103860317 L1HS 6032 + 1 6031 24 73 0 1 5956 chain 71681 chr5 180915260 + 103882174 103883253 MER11A 1151 + 0 1151 47612 78 1 9 113 1 0 30 1 0 64 0 11 23 34 0 146 16 32 26 0 12 129 15 18 11 3 4 37 0 4 67 0 1 19 5 63 94 8 7 54 2 1 32 1 0 10 3 0 56 chain 28456 chr5 180915260 + 103904224 103904526 AluYf4 310 + 0 302 91352 302 chain 5562 chr5 180915260 + 103936735 103936827 L1MA4 2864 - 55 140 189454 43 3 1 27 5 0 14 chain 25924 chr5 180915260 + 104004808 104005105 AluYk4 311 + 0 295 100323 132 1 0 129 1 0 34 chain 33634 chr5 180915260 + 104015269 104015698 THE1B-int 1605 + 0 429 78196 33 6 5 185 0 1 205 chain 218616 chr5 180915260 + 104017526 104020886 L1PB1 5432 + 2142 5422 17964 254 4 5 45 7 6 45 0 6 79 1 6 229 26 25 165 2 1 171 0 9 860 11 145 330 1 0 98 3 0 44 0 2 38 0 2 105 6 1 27 1 0 4 11 12 226 220 32 24 8 6 14 27 12 49 3 2 16 5 4 38 2 1 16 2 0 6 1 0 10 8 0 8 31 26 24 1 0 14 8 7 13 1 0 18 chain 14571 chr5 180915260 + 104037594 104037776 L1PA4 6152 - 9 193 142677 92 0 2 90 chain 486568 chr5 180915260 + 104053455 104058934 L1PA3long 6157 + 0 6152 7497 94 0 526 72 0 15 59 10 138 488 32 32 740 0 1 159 0 2 2802 0 1 1023 chain 16246 chr5 180915260 + 104082220 104082519 THE1B 368 - 62 366 137629 57 56 61 19 1 0 55 0 1 46 13 4 10 0 9 42 chain 56736 chr5 180915260 + 104082807 104083567 THE1B-int 1605 + 858 1600 54696 217 12 9 65 1 0 199 16 0 29 1 2 208 0 1 12 chain 24895 chr5 180915260 + 104083579 104083938 THE1B 368 + 6 368 105379 7 2 0 32 0 9 10 11 2 103 1 0 23 2 0 114 5 13 49 chain 22606 chr5 180915260 + 104094999 104095491 MER4B 649 + 0 547 117564 17 10 32 14 0 1 93 0 42 99 172 162 87 chain 67668 chr5 180915260 + 104118617 104119476 L1PA7 6471 + 5614 6467 49377 7 9 0 217 3 6 18 1 2 275 1 0 328 chain 120340 chr5 180915260 + 104121010 104122561 THE1A-int 1579 + 7 1574 30925 8 0 2 46 1 2 409 0 2 570 1 12 109 1 2 106 1 0 299 chain 37495 chr5 180915260 + 104130222 104130690 LTR2 463 + 0 463 72814 210 27 22 231 chain 8539 chr5 180915260 + 104144418 104144585 L1MA5A 2387 + 2169 2306 168071 12 1 0 38 3 0 14 29 4 59 1 0 10 chain 27479 chr5 180915260 + 104145114 104145447 LTR12_ 688 - 0 334 94719 81 0 1 252 chain 3486 chr5 180915260 + 104146580 104146623 THE1C-int 1605 - 1398 1441 215585 43 chain 12331 chr5 180915260 + 104159416 104159703 L1PB1 5432 - 10 272 150889 18 1 0 13 2 1 20 1 0 24 2 0 15 42 29 6 3 0 8 1 0 7 1 0 14 0 2 23 11 10 11 2 1 53 2 0 7 chain 105592 chr5 180915260 + 104164381 104165707 L1PA6 6164 - 2066 3398 35352 197 1 2 196 0 1 460 0 4 36 6 5 7 0 1 423 chain 173626 chr5 180915260 + 104165708 104167763 L1PA6 6164 + 4119 6161 21633 661 0 3 130 0 1 167 0 1 718 16 1 191 19 19 65 3 0 85 chain 323861 chr5 180915260 + 104184197 104188420 L1PA7 6471 - 3 4127 12445 10 3 0 89 4 8 83 0 2 86 0 1 57 0 1 420 2 1 89 1 0 949 0 4 139 43 44 103 14 50 108 0 6 35 0 1 4 160 0 251 0 1 40 0 1 332 0 4 47 2 0 404 0 4 10 1 2 52 0 3 135 4 0 392 0 2 154 chain 12207 chr5 180915260 + 104186436 104186595 L1PA7 6471 - 3738 3889 149574 92 8 0 59 chain 167594 chr5 180915260 + 104200757 104207243 HERVL-int 5654 + 181 5636 22324 942 5 6 584 4228 3196 316 16 8 192 0 8 203 chain 34015 chr5 180915260 + 104202346 104202765 HERVL-int 5654 + 5234 5654 77597 196 0 1 223 chain 32417 chr5 180915260 + 104207266 104207730 MLT2A1 477 + 5 477 80174 35 6 7 122 4 1 215 4 0 15 18 32 45 chain 53994 chr5 180915260 + 104217570 104218178 L1PA4 6152 - 1067 1678 55897 296 0 2 178 0 1 134 chain 93923 chr5 180915260 + 104218178 104219207 L1PA4 6152 + 5107 6136 38372 1029 chain 112068 chr5 180915260 + 104264510 104265943 LTR12C 1709 + 0 1709 33643 214 32 20 230 1 0 4 0 3 179 0 119 68 1 0 192 2 168 27 0 4 333 1 0 51 28 27 70 chain 98891 chr5 180915260 + 104285383 104287217 L1PA10 4194 - 2575 4019 37053 18 0 1 132 0 13 153 347 0 323 19 20 183 4 5 287 2 0 81 1 0 6 8 2 15 1 0 10 1 0 7 1 0 7 1 0 21 2 0 16 59 32 15 2 0 30 2 1 9 2 0 9 12 8 8 2 0 8 6 3 10 3 0 11 chain 23837 chr5 180915260 + 104294762 104295103 L1PA7 6471 + 6132 6461 111270 7 2 0 146 52 42 134 chain 33268 chr5 180915260 + 104298797 104299296 L1PA16 3655 - 92 592 78777 158 1 5 110 9 7 12 11 10 27 15 16 17 3 2 136 chain 54938 chr5 180915260 + 104330501 104331540 L1PA16 3655 - 63 1124 55750 14 3 0 149 13 14 38 12 15 20 56 62 79 1 0 5 4 6 51 50 76 146 1 0 14 26 24 26 83 75 103 1 0 144 chain 279642 chr5 180915260 + 104336271 104339451 L1PA5 6144 - 6 3187 14654 3157 0 1 23 chain 153517 chr5 180915260 + 104339451 104341236 L1PA5 6144 + 1169 2962 24081 44 7 5 332 0 2 484 0 1 515 0 1 297 0 6 106 chain 13545 chr5 180915260 + 104360731 104360878 L1PA3long 6157 + 6010 6157 146191 147 chain 15820 chr5 180915260 + 104363544 104363908 THE1D 372 + 0 372 138896 70 57 58 34 78 86 92 1 0 32 chain 117271 chr5 180915260 + 104370990 104372565 THE1B-int 1605 - 0 1605 32034 16 0 1 6 1 0 182 0 1 134 21 20 279 1 0 288 0 3 84 0 1 30 1 0 36 19 22 46 15 40 416 chain 314001 chr5 180915260 + 104384935 104389195 L1PA7 6471 - 3 3956 12856 7 4 0 145 0 1 183 1 2 285 7 8 134 1 0 86 0 3 618 18 11 265 0 2 46 7 11 53 0 2 19 8 9 4 1 0 71 4 5 760 0 1 184 0 4 56 18 13 52 1 0 5 0 1 718 311 0 65 1 2 122 chain 10719 chr5 180915260 + 104392149 104392334 Tigger1 2417 + 22 207 157330 28 27 26 30 5 7 4 1 0 90 chain 4856 chr5 180915260 + 104404256 104404315 MLT1B 390 - 46 105 196714 59 chain 4085 chr5 180915260 + 104437608 104437655 MLT1D 503 - 2 49 206141 47 chain 26913 chr5 180915260 + 104448030 104448404 MLT2A1 477 - 84 477 96585 8 4 0 101 6 8 32 1 2 25 0 22 26 5 2 125 0 1 41 chain 187841 chr5 180915260 + 104448404 104450791 HERVL-int 5654 - 0 3876 20256 103 6 1458 125 0 2 285 12 21 428 4 5 144 0 3 236 5 21 492 1 2 31 0 1 75 0 1 25 4 5 41 0 2 370 chain 5179 chr5 180915260 + 104471584 104471675 MLT1B-int 1170 + 982 1071 193245 37 16 14 38 chain 7039 chr5 180915260 + 104478232 104478368 THE1B 368 - 42 187 177185 76 36 42 9 0 3 15 chain 27276 chr5 180915260 + 104480534 104480835 AluYa5 310 - 0 300 95351 184 1 0 116 chain 4319 chr5 180915260 + 104495735 104495790 L1MD3 1191 + 1094 1149 202978 55 chain 42677 chr5 180915260 + 104495973 104496510 L1PA7 6471 - 2081 2621 65802 26 0 1 381 0 1 41 8 9 81 chain 23327 chr5 180915260 + 104496515 104496792 L1PA7 6471 - 2629 2906 109832 277 chain 160755 chr5 180915260 + 104496792 104498791 L1PA7 6471 + 4449 6470 23230 122 1 0 6 1 2 300 0 1 68 8 1 674 0 10 26 7 11 13 4 5 35 0 14 567 12 11 155 chain 20344 chr5 180915260 + 104506186 104506417 L1PA7 6471 + 5387 5619 126085 29 0 1 202 chain 68796 chr5 180915260 + 104506418 104507255 L1PA7 6471 + 5623 6466 48897 4 0 1 171 2 6 402 0 1 258 chain 186686 chr5 180915260 + 104520356 104522478 L1PA4 6152 - 1123 3256 20362 120 6 7 208 0 1 335 0 8 573 1 2 879 chain 94664 chr5 180915260 + 104522478 104523543 L1PA4 6152 + 5072 6141 38133 210 0 4 855 chain 8821 chr5 180915260 + 104528762 104528863 L1PA3long 6157 - 1 101 166550 4 1 0 96 chain 103666 chr5 180915260 + 104529626 104530860 L1PA5 6144 - 0 1235 35811 326 0 1 298 29 20 204 0 4 144 0 5 233 chain 458598 chr5 180915260 + 104534203 104539643 L1PA5 6144 + 620 6128 8454 5 0 1 342 0 1 200 9 0 114 0 3 294 0 65 58 1 0 233 1 0 189 0 6 176 7 0 295 2 1 500 1 4 395 1 0 171 1 0 210 0 2 902 0 2 693 1 3 179 0 3 75 1 0 252 1 3 131 chain 4110 chr5 180915260 + 104545930 104546015 MER2 342 + 132 215 205771 15 23 21 47 chain 180658 chr5 180915260 + 104557287 104559359 L1PA4 6152 + 4072 6152 20927 40 6 17 218 7 11 257 0 1 6 6 0 1129 1 0 392 1 0 9 chain 74881 chr5 180915260 + 104651246 104652066 L1PA2 6032 - 420 1240 46073 820 chain 25078 chr5 180915260 + 104652161 104652424 AluYa5 310 + 34 297 104419 263 chain 31100 chr5 180915260 + 104652425 104652760 L1PA2 6032 + 5697 6032 82342 335 chain 22013 chr5 180915260 + 104663318 104663584 AluY 311 + 0 271 120166 88 1 5 39 0 1 138 chain 21434 chr5 180915260 + 104688441 104688679 L1PA3long 6157 + 5919 6157 122394 238 chain 29051 chr5 180915260 + 104702532 104702843 AluYa5 310 - 0 310 88759 184 1 0 126 chain 4420 chr5 180915260 + 104705835 104705881 tRNA-Arg-CGY_ 50 + 0 46 201694 46 chain 254702 chr5 180915260 + 104751580 104756208 L1PB1 5432 + 1788 5409 16001 325 2 0 188 0 1 188 16 9 338 1 0 383 0 1 4 0 32 471 3 0 116 0 1 120 0 1 104 0 5 73 0 1 36 9 9 405 56 52 95 12 17 100 0 1 91 1029 8 136 6 20 15 1 0 13 1 0 9 6 2 11 2 0 50 1 0 18 1 0 44 1 0 15 3 0 12 10 1 14 28 23 24 1 0 21 1 0 13 1 0 5 chain 73843 chr5 180915260 + 104754736 104755736 MER11A 1151 - 9 1145 46596 154 10 11 5 1 0 34 0 1 16 0 1 57 20 55 74 1 0 5 0 1 38 5 7 138 0 7 10 6 0 87 0 1 146 4 0 66 1 0 52 0 99 64 0 1 6 chain 7129 chr5 180915260 + 104770872 104771047 MLT2D 439 - 162 336 176551 65 72 71 38 chain 68666 chr5 180915260 + 104772306 104773332 MER11A 1151 - 0 1151 48954 37 1 5 118 9 10 60 0 1 36 18 0 25 13 46 31 16 12 80 5 6 145 0 1 53 4 5 36 0 1 54 0 1 61 0 2 31 4 0 66 1 0 53 0 91 30 18 33 21 chain 4432 chr5 180915260 + 104784900 104785092 MER74C 455 - 234 449 201566 16 85 107 33 31 32 27 chain 18584 chr5 180915260 + 104785775 104786116 THE1B 368 + 0 365 131276 44 29 44 79 0 1 4 10 8 18 27 44 7 7 0 116 chain 7341 chr5 180915260 + 104838749 104838827 L1PA2 6032 - 10 88 175147 78 chain 550099 chr5 180915260 + 104848937 104854975 L1HS 6032 - 0 6032 1435 468 0 1 1218 0 1 379 1 0 401 0 4 1443 0 1 62 0 2 346 14 0 1706 chain 106235 chr5 180915260 + 104860997 104862829 L1PB1 5432 - 136 1644 35201 15 1 0 35 10 9 16 2 1 43 0 1 9 2 0 5 20 15 9 1 0 24 1 0 9 331 10 77 5 4 17 13 14 168 3 11 175 2 0 107 0 5 518 10 7 204 chain 322299 chr5 180915260 + 104912035 104916019 L1PA7 6471 - 22 4018 12508 27 0 3 408 1 0 392 1 4 208 8 3 729 0 4 193 25 23 453 0 4 49 0 14 98 0 1 26 0 12 272 8 7 16 3 0 149 2 1 132 4 2 353 0 1 225 15 0 187 chain 14255 chr5 180915260 + 104916019 104916183 L1PA7 6471 + 2274 2438 143696 164 chain 23319 chr5 180915260 + 104926998 104927291 AluY 311 + 4 298 114099 128 0 1 42 8 0 79 0 8 36 chain 27740 chr5 180915260 + 104931110 104931407 AluYd8 298 - 0 298 93907 34 0 1 263 chain 275890 chr5 180915260 + 104934580 104938306 L1P2 5180 + 1759 5005 14878 800 0 1 611 0 1 17 1 0 70 482 0 427 11 5 252 1 2 56 2 1 207 0 1 207 1 0 181 0 6 193 0 1 207 chain 4585 chr5 180915260 + 104936501 104936558 L1P2 5180 - 1920 1977 199797 57 chain 73493 chr5 180915260 + 104941314 104942257 L1PA6 6164 + 5218 6161 46788 84 6 7 629 26 26 81 1 2 107 2 0 7 chain 64159 chr5 180915260 + 104960435 104961125 L1PA3long 6157 - 0 690 50935 690 chain 15361 chr5 180915260 + 104966825 104967130 THE1C 375 - 34 375 140313 106 42 57 63 1 2 10 34 56 31 2 0 16 chain 15170 chr5 180915260 + 105005398 105005604 MER107 203 + 1 203 140857 107 0 2 63 3 0 3 3 0 27 chain 26361 chr5 180915260 + 105053382 105054063 L1PB1 5432 - 10 550 98567 18 1 0 11 1 0 8 115 98 6 1 0 45 1 0 15 3 2 41 183 63 10 1 2 221 chain 112667 chr5 180915260 + 105054071 105055557 L1PB1 5432 + 3389 4881 33483 338 5 8 227 6 5 647 10 12 170 12 14 71 chain 29315 chr5 180915260 + 105105002 105105340 L1PA4 6152 + 5801 6135 87461 197 4 0 137 chain 52539 chr5 180915260 + 105190152 105190735 L1PA4 6152 - 1 584 57272 583 chain 67736 chr5 180915260 + 105190735 105191484 L1PA4 6152 + 4820 5569 49352 749 chain 115899 chr5 180915260 + 105194584 105195930 SVA_C 1631 + 0 1631 32496 17 2 0 448 0 117 137 0 40 16 0 40 49 0 92 47 0 1 610 3 0 17 chain 22178 chr5 180915260 + 105207803 105208172 MER4A 717 - 0 365 119452 13 1 0 128 6 0 86 19 6 11 7 0 32 12 18 16 1 18 37 chain 55444 chr5 180915260 + 105208174 105208858 LTR30 714 + 0 714 55444 159 0 1 56 1 0 124 0 32 112 2 1 161 1 0 68 chain 23713 chr5 180915260 + 105237743 105238045 AluSc 308 - 1 300 111962 29 2 0 147 1 0 123 chain 491574 chr5 180915260 + 105334184 105341065 L1PA7 6471 - 12 6468 7290 26 9 0 6 0 13 278 1 0 154 591 0 278 0 2 77 9 7 572 3 4 73 1 2 18 1 0 106 8 21 183 1 0 31 0 2 27 0 1 7 2 1 9 0 1 175 6 5 220 3 4 241 0 1 82 11 0 241 0 3 35 0 4 97 4 6 5 2 0 170 1 0 248 4 5 348 0 171 722 0 7 556 0 4 34 0 1 310 0 2 403 0 1 49 48 0 23 1 4 99 1 2 64 1 7 40 11 9 39 0 4 116 chain 49525 chr5 180915260 + 105334663 105335249 LTR14C 587 - 0 587 59371 572 1 2 13 chain 2510 chr5 180915260 + 105347817 105347890 L1MC1 2226 + 2091 2151 233006 12 3 1 18 17 7 7 1 0 15 chain 15462 chr5 180915260 + 105347945 105348154 THE1D-int 1627 - 1418 1627 140014 171 1 0 13 11 12 13 chain 20482 chr5 180915260 + 105366720 105367062 THE1A 353 - 0 353 125678 239 6 5 12 64 76 21 chain 118182 chr5 180915260 + 105367067 105368587 THE1A-int 1579 - 5 1542 31733 4 0 1 289 5 4 332 0 1 10 7 8 440 6 7 39 4 5 125 6 18 151 0 1 102 chain 23058 chr5 180915260 + 105381717 105382003 AluSp 311 + 10 300 115364 40 1 7 228 2 0 15 chain 16415 chr5 180915260 + 105393527 105393739 AluSq10 312 - 14 222 137167 49 1 0 117 1 0 4 2 0 38 chain 82533 chr5 180915260 + 105409601 105412071 L1PB1 5432 + 3735 5410 42524 72 8 11 538 1 0 217 1 0 37 2 6 9 5 1 59 1200 434 15 1 0 13 16 11 11 4 3 45 6 5 15 2 1 43 2 1 14 28 16 15 28 23 20 1 0 21 1 0 13 1 0 6 chain 26007 chr5 180915260 + 105436609 105436905 AluY 311 + 14 310 99985 296 chain 10908 chr5 180915260 + 105440431 105440590 L1PB 1623 - 143 300 156562 25 7 5 127 chain 62417 chr5 180915260 + 105440598 105441459 L1PB 1623 + 433 1303 51716 52 1 0 12 20 18 266 0 1 116 0 1 211 0 1 9 1 10 17 8 7 124 1 2 23 chain 4181 chr5 180915260 + 105445917 105446192 LTR52 417 - 63 349 204816 45 207 218 23 chain 32496 chr5 180915260 + 105482334 105482702 L1PA4 6152 - 751 1119 80031 368 chain 62363 chr5 180915260 + 105482702 105483391 L1PA4 6152 + 5446 6141 51733 682 0 6 7 chain 126686 chr5 180915260 + 105483641 105484990 L1HS 6032 - 0 1349 28888 1349 chain 107418 chr5 180915260 + 105489825 105491202 LTR12C 1709 + 0 1709 34862 278 18 18 42 0 43 178 6 12 78 0 2 9 0 278 134 0 2 38 1 0 5 7 5 93 9 13 481 chain 12547 chr5 180915260 + 105541426 105541697 LTR12C 1709 - 712 933 150054 20 49 0 45 45 45 50 1 0 61 chain 18981 chr5 180915260 + 105556889 105557158 Tigger3a 397 - 26 344 130158 226 25 74 18 chain 104242 chr5 180915260 + 105581780 105583093 LTR12C 1709 + 0 1709 35680 16 1 0 108 1 10 204 0 43 269 0 278 155 1 48 93 0 4 29 30 48 253 1 0 67 1 0 84 chain 77848 chr5 180915260 + 105594869 105595832 LTR5_Hs 974 - 0 974 44595 191 7 7 116 0 1 197 0 4 169 0 2 270 0 4 13 chain 30786 chr5 180915260 + 105603856 105604255 MLT2A1 477 - 75 477 82887 7 3 0 10 0 2 210 1 5 25 0 1 16 1 0 126 chain 21147 chr5 180915260 + 105680635 105680899 THE1B-int 1605 + 16 281 123381 95 0 1 169 chain 32285 chr5 180915260 + 105694743 105695247 MER1A 529 + 44 529 80390 36 20 5 45 9 5 87 0 1 221 54 53 32 chain 7528 chr5 180915260 + 105697048 105697160 Tigger4 2445 - 389 493 173989 6 7 0 19 1 0 79 chain 10348 chr5 180915260 + 105709378 105709506 MER85 139 - 0 138 158915 40 0 10 88 chain 4823 chr5 180915260 + 105718936 105718993 LTR43B 570 + 502 559 197098 57 chain 541101 chr5 180915260 + 105761083 105767082 L1PA2 6032 - 1 6032 2652 858 0 1 2609 0 1 973 0 1 1080 0 17 235 5 4 43 0 1 39 0 11 85 1 2 71 chain 2765 chr5 180915260 + 105789172 105789220 HERVL40-int 1241 + 381 428 229255 14 7 6 27 chain 53450 chr5 180915260 + 105793418 105794083 L1PA7 6471 - 2 673 56722 10 2 0 25 5 11 284 0 1 6 0 1 333 chain 61926 chr5 180915260 + 105806198 105806881 L1PA4 6152 + 5468 6151 51931 683 chain 11280 chr5 180915260 + 105815032 105815164 L1PA8A 6298 + 6158 6290 155129 132 chain 18460 chr5 180915260 + 105823036 105823280 L1PA8 5853 - 50 288 131616 43 1 0 19 2 1 54 1 0 7 2 1 70 2 0 43 chain 56032 chr5 180915260 + 105846533 105847315 LTR12 884 + 0 869 55099 92 0 66 93 0 25 100 2 0 159 6 10 25 4 8 58 10 14 173 15 1 45 chain 87901 chr5 180915260 + 105875066 105876155 L1PA7 6471 - 3 1085 40415 58 0 4 706 12 14 65 4 0 6 7 0 165 1 0 22 1 0 42 chain 206893 chr5 180915260 + 105896848 105899797 HERVL-int 5654 + 99 2943 18728 31 6 8 97 14 15 95 38 22 48 0 4 369 2 0 120 0 2 19 11 16 304 11 6 107 0 1 25 1 6 325 2 4 123 8 9 266 112 0 543 26 32 131 0 3 108 2 0 5 chain 40592 chr5 180915260 + 105922427 105922992 MER41A 554 + 0 548 68454 395 7 11 20 1 0 70 31 11 41 chain 10609 chr5 180915260 + 105929092 105929246 L1PA10 4194 + 4003 4150 157782 101 2 3 9 3 0 21 0 1 4 6 0 8 chain 23226 chr5 180915260 + 105949803 105950056 AluYd8 298 - 12 265 114560 253 chain 536062 chr5 180915260 + 105958519 105964510 L1PA3long 6157 - 15 6157 3437 1347 0 22 830 0 1 427 1 0 1567 1 0 502 0 1 405 1 0 136 0 128 200 1 2 420 1 2 152 chain 161037 chr5 180915260 + 105973339 105975119 L1PA4 6152 + 4377 6152 23191 1515 1 0 254 4 0 6 chain 45250 chr5 180915260 + 105988537 105989111 L1PA7 6471 + 5873 6454 62767 96 6 5 339 0 1 75 1 8 57 chain 25439 chr5 180915260 + 105999368 105999667 AluSp 311 - 12 311 102497 299 chain 69530 chr5 180915260 + 106015149 106016005 L1PA7 6471 + 5614 6469 48596 84 0 2 433 1 2 170 19 18 132 3 0 14 chain 29764 chr5 180915260 + 106018914 106019251 L1P1 4361 - 33 368 85268 23 1 0 155 1 0 157 chain 73672 chr5 180915260 + 106019251 106020068 L1PA3long 6157 + 5340 6157 46695 817 chain 33677 chr5 180915260 + 106020512 106021087 L1PB1 5432 + 4883 5427 78134 220 1 0 8 4 3 24 1 0 9 1 0 11 5 1 9 2 0 49 5 4 15 1 0 43 2 1 14 1 0 2 2 0 13 9 0 18 7 4 15 2 0 24 1 0 20 0 3 11 1 0 10 1 0 9 1 0 4 chain 14256 chr5 180915260 + 106025656 106025819 L1PA5 6144 - 2 162 143694 11 3 0 149 chain 139120 chr5 180915260 + 106029423 106030935 L1PA2 6032 - 2 1514 26275 1512 chain 138028 chr5 180915260 + 106030935 106032436 L1PA2 6032 + 2995 4496 26452 1501 chain 546363 chr5 180915260 + 106049567 106055589 L1PA2 6032 - 3 6032 1899 2973 0 1 857 1 0 118 0 2 940 0 4 650 1 2 482 chain 38098 chr5 180915260 + 106065236 106065724 L1PA6 6164 + 5672 6162 71987 159 0 1 56 0 1 273 chain 6011 chr5 180915260 + 106072029 106072096 L1PA2 6032 - 180 247 185124 67 chain 86675 chr5 180915260 + 106078042 106079163 L1PA6 6164 - 2 1129 40894 21 0 1 29 10 6 40 18 18 188 10 12 46 0 6 301 0 1 458 chain 2975 chr5 180915260 + 106100543 106100575 L1PA6 6164 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0 1 627 chain 3334 chr5 180915260 + 106248240 106248276 THE1B 368 - 82 118 218341 36 chain 30282 chr5 180915260 + 106248455 106248837 MLT2A1 477 - 94 477 83990 210 0 4 11 4 0 16 1 2 140 chain 431912 chr5 180915260 + 106249251 106254690 HERVL-int 5654 - 142 5654 9273 81 1 7 43 9 11 462 6 0 91 0 1 199 0 19 47 0 1 918 4 0 80 0 4 268 4 0 676 0 1 91 5 8 172 1 3 56 1 0 61 12 13 47 0 10 91 8 10 317 2 4 224 4 1 346 0 1 29 0 1 102 3 4 32 0 1 242 1 2 86 6 5 46 0 1 6 0 1 109 0 3 186 0 4 137 0 7 39 2 3 46 0 16 40 chain 34278 chr5 180915260 + 106254690 106255117 MLT2A1 477 - 0 477 77243 38 14 59 207 0 4 28 0 1 140 chain 3721 chr5 180915260 + 106266266 106266306 L1PA3long 6157 + 6117 6157 211635 40 chain 144426 chr5 180915260 + 106274094 106275736 L1PA5 6144 + 4501 6144 25409 111 0 1 44 0 1 1474 2 1 11 chain 43201 chr5 180915260 + 106297619 106298147 L1PA7 6471 + 5921 6450 65171 387 1 2 140 chain 38992 chr5 180915260 + 106314288 106314739 LTR7 482 + 0 482 70753 54 2 0 211 0 31 129 0 2 55 chain 271647 chr5 180915260 + 106314741 106318106 HERVH-int 3825 + 0 3825 15104 212 4 15 99 5 112 55 47 111 14 1 0 12 2 0 39 3 44 16 2 1 49 1 0 61 1 4 379 15 0 63 2 1 396 6 33 299 0 10 280 0 1 213 0 7 594 8 218 487 chain 2670 chr5 180915260 + 106315119 106315163 HERVH-int 3825 + 604 685 201591 15 0 37 29 chain 40123 chr5 180915260 + 106319336 106319787 LTR7 482 + 0 482 69147 264 1 32 186 chain 477195 chr5 180915260 + 106330031 106335977 L1PA7 6471 - 21 6029 7823 125 18 18 194 0 8 86 0 13 145 0 1 116 0 1 122 2 1 81 0 1 212 0 1 471 5 4 33 0 4 160 1 0 74 0 1 5 1 0 431 0 1 12 0 1 79 6 7 191 0 1 6 14 13 222 0 16 95 0 1 7 1 0 4 1 2 386 0 5 77 0 1 90 14 24 793 1 0 4 0 2 315 8 15 205 11 6 5 2 0 4 0 1 668 2 0 441 chain 11414 chr5 180915260 + 106351585 106351750 MER44A 345 - 94 260 154622 73 9 16 61 6 0 16 chain 8917 chr5 180915260 + 106466421 106466522 L1MA4 2864 - 192 293 166049 101 chain 13088 chr5 180915260 + 106469296 106469442 L1PA4 6152 - 211 357 147890 146 chain 3875 chr5 180915260 + 106469442 106469488 L1PA3long 6157 + 6109 6155 209241 46 chain 8658 chr5 180915260 + 106478475 106478670 L1MA5A 2387 + 2106 2278 167437 51 2 0 24 2 0 6 66 47 44 chain 414406 chr5 180915260 + 106494447 106499574 L1PA8A 6298 + 1143 6290 9686 74 3 0 5 0 2 144 6 5 47 5 4 1119 1 2 246 1 2 155 1 0 4 0 1 151 0 1 267 1 0 33 1 0 41 1 4 117 1 0 288 0 1 6 1 0 127 18 15 80 1 0 534 1 0 349 6 0 189 2 1 233 10 15 79 1 0 277 0 1 484 0 27 17 chain 26651 chr5 180915260 + 106509562 106509904 THE1B 368 - 12 368 97483 182 1 0 115 0 15 44 chain 26917 chr5 180915260 + 106550534 106550846 L1PA5 6144 - 16 328 96565 312 chain 29389 chr5 180915260 + 106575031 106575407 THE1C 375 + 0 375 87126 350 1 0 25 chain 4514 chr5 180915260 + 106575503 106575562 THE1C-int 1605 + 154 210 200632 11 3 0 45 chain 25581 chr5 180915260 + 106576951 106577280 THE1C 375 + 0 336 101822 19 2 0 42 0 9 266 chain 39345 chr5 180915260 + 106614607 106615273 L1PA15 4387 - 38 687 70260 19 8 4 10 2 0 46 8 5 11 0 5 32 1 0 10 4 0 22 1 0 55 9 13 13 1 0 88 0 2 12 0 1 4 6 5 60 1 0 37 7 5 62 3 0 11 0 2 5 4 0 35 7 3 72 chain 15382 chr5 180915260 + 106627216 106627482 MER30 238 - 2 238 140255 40 3 0 63 3 0 5 17 29 8 36 0 91 chain 24332 chr5 180915260 + 106668880 106669164 L1PA7 6471 - 6 290 108472 284 chain 29422 chr5 180915260 + 106669164 106669508 L1PA7 6471 + 5839 6182 86977 296 1 0 47 chain 3319 chr5 180915260 + 106740271 106740310 MIRb 242 - 99 138 218605 39 chain 16745 chr5 180915260 + 106779328 106779577 L1PA8 5853 + 5608 5853 136271 70 6 5 11 8 7 42 1 0 15 4 3 92 chain 41140 chr5 180915260 + 106787414 106787908 L1PA8A 6298 + 5669 6175 67732 356 0 12 138 chain 9585 chr5 180915260 + 106787914 106788025 L1PA8A 6298 + 6180 6291 162669 111 chain 13990 chr5 180915260 + 106793086 106793274 MER2 342 - 65 255 144609 112 2 3 46 0 1 28 chain 118628 chr5 180915260 + 106829766 106831218 LTR12C 1709 + 0 1709 31566 196 7 9 91 0 2 170 1 49 161 2 0 23 0 200 146 12 17 48 1 0 7 1 0 105 0 4 481 chain 30174 chr5 180915260 + 106958440 106958758 AluYb8 318 + 0 318 84256 318 chain 7430 chr5 180915260 + 106965798 106965900 MER30 238 + 131 235 174576 7 2 0 58 0 3 10 0 1 25 chain 4485 chr5 180915260 + 106966851 106966902 Tigger3b 1229 - 1127 1178 200972 51 chain 227391 chr5 180915260 + 107055630 107058739 L1PA10 4194 + 174 3228 17461 13 3 0 12 3 0 6 0 1 9 23 17 9 2 1 8 1 0 21 2 0 15 1 0 8 25 12 7 1 0 22 2 0 21 1 0 7 14 8 9 1 0 15 26 18 72 7 5 370 1 5 14 2 1 6 0 1 275 1 0 6 0 1 24 0 1 99 0 5 104 16 17 389 4 1 615 14 1 204 0 1 19 0 1 48 0 3 189 15 9 61 1 0 173 3 5 90 chain 3221 chr5 180915260 + 107153784 107153834 L1MB2 1706 - 67 115 220552 27 2 1 13 1 0 7 chain 3957 chr5 180915260 + 107184986 107185028 MADE1 96 - 54 96 208021 42 chain 58546 chr5 180915260 + 107234223 107234918 L1PA7 6471 - 50 747 53676 102 1 2 130 0 1 131 0 4 186 4 0 141 chain 63978 chr5 180915260 + 107243210 107243910 L1PA3long 6157 + 5211 5911 51017 700 chain 20518 chr5 180915260 + 107303153 107303391 L1PA5 6144 + 5905 6143 125575 238 chain 398706 chr5 180915260 + 107383982 107389923 L1PA8A 6298 + 1143 6291 10148 71 5 9 591 6 15 186 288 0 435 4 7 49 1 0 5 1 0 323 0 23 59 0 1 221 0 12 12 2 1 178 6 5 12 7 6 102 39 9 11 6 5 172 0 1 209 1 0 179 3 0 43 6 7 4 1 0 171 465 0 180 5 6 78 0 8 190 1 2 83 0 1 256 3 2 206 1 2 29 0 1 168 1 3 88 69 0 86 0 2 623 chain 3503 chr5 180915260 + 107409731 107409859 LTR49 580 + 347 482 215311 14 29 21 28 28 43 8 0 1 6 1 0 14 chain 7100 chr5 180915260 + 107413415 107413577 LTR49-int 1717 + 1481 1627 176756 61 2 0 19 50 38 7 1 0 13 1 0 8 chain 10631 chr5 180915260 + 107478555 107478679 L1PA7 6471 + 6330 6454 157692 124 chain 24707 chr5 180915260 + 107490022 107490308 AluSp 311 + 10 299 106392 81 0 3 205 chain 13822 chr5 180915260 + 107508957 107509109 L1PA3long 6157 + 6005 6157 145174 152 chain 3824 chr5 180915260 + 107519500 107519570 L1PB3 3668 - 73 139 210012 7 0 1 5 1 0 13 7 3 37 chain 486204 chr5 180915260 + 107543032 107549448 L1PA7 6471 - 2 6471 7512 30 9 8 220 5 10 63 0 2 240 0 2 20 28 34 53 25 23 54 1 0 37 0 1 50 1 4 96 0 2 267 14 15 753 0 2 276 0 1 4 1 0 361 6 5 259 0 1 333 4 0 6 14 18 407 0 1 176 14 5 32 5 0 505 1 0 308 3 4 26 0 2 172 5 0 235 73 93 56 1 2 397 18 17 42 2 19 110 26 33 104 1 0 47 16 14 146 64 72 194 chain 46421 chr5 180915260 + 107552351 107553032 LTR25 836 + 1 794 61663 49 1 2 257 0 1 63 5 0 9 1 4 43 0 2 5 6 114 91 14 13 78 5 7 19 8 9 27 chain 6508 chr5 180915260 + 107564778 107564856 L1PB1 5432 - 1528 1606 181174 78 chain 108639 chr5 180915260 + 107564856 107566418 L1PB1 5432 + 3915 5427 34528 77 1 0 34 12 1 25 3 5 569 3 0 73 10 9 168 1 0 227 24 22 15 1 0 6 1 0 12 5 1 9 2 0 52 2 1 15 1 0 44 1 0 16 25 13 17 3 1 4 1 0 15 2 0 24 1 0 19 17 15 15 1 0 4 1 0 4 chain 66908 chr5 180915260 + 107567201 107568105 HERVL-int 5654 + 4763 5654 49681 109 5 8 132 2 3 32 42 20 193 0 1 16 1 4 153 0 1 219 chain 29657 chr5 180915260 + 107568105 107568475 MLT2A1 477 + 0 379 86040 15 0 4 121 0 1 27 1 5 206 chain 77392 chr5 180915260 + 107608608 107610531 MER11C 1089 - 16 1089 44785 8 0 1 134 1 2 8 1 0 54 0 1 85 887 10 31 1 2 38 7 9 369 0 4 62 4 13 12 0 5 106 0 4 115 chain 11803 chr5 180915260 + 107608909 107609035 L1PA3long 6157 + 6016 6142 153028 126 chain 21485 chr5 180915260 + 107672691 107672975 AluSc 308 + 10 298 122199 14 10 15 218 2 1 40 chain 10424 chr5 180915260 + 107689615 107689749 Tigger4a 237 - 1 135 158586 134 chain 5990 chr5 180915260 + 107693425 107693498 L1PA6 6164 - 2 73 185331 8 2 0 63 chain 41088 chr5 180915260 + 107728788 107729323 MLT2A2 560 - 0 560 67780 6 0 4 60 0 1 4 0 11 58 6 17 160 3 0 35 0 1 203 chain 492043 chr5 180915260 + 107734175 107741395 L1PA7 6471 + 0 6470 7267 215 0 1 188 9 0 47 9 8 13 1 2 87 10 13 47 4 5 609 0 4 28 0 1 61 0 2 22 0 1 39 0 3 19 1 3 631 8 43 82 0 1 353 3 10 86 4 16 4 0 1 57 517 0 801 535 207 309 0 13 487 0 2 86 0 2 67 13 17 292 7 8 175 0 3 44 0 1 398 0 3 628 0 1 224 chain 44489 chr5 180915260 + 107736827 107737329 MER9a1 513 - 9 513 63594 212 0 1 277 0 1 13 chain 23403 chr5 180915260 + 107738203 107738471 L1PA6 6164 - 15 283 113630 268 chain 16184 chr5 180915260 + 107738471 107738665 L1PA7 6471 - 2751 2945 137110 194 chain 13475 chr5 180915260 + 107746922 107747154 L1PA6 6164 - 3 217 146433 7 2 0 12 28 15 106 10 7 67 chain 7047 chr5 180915260 + 107751341 107751426 MER2 342 - 137 222 177137 85 chain 419371 chr5 180915260 + 107758606 107763751 L1PA8A 6298 - 7 5161 9551 451 18 0 268 0 2 79 0 3 410 1 0 181 0 1 72 0 15 412 0 4 10 0 1 336 0 2 155 5 11 12 7 1 510 3 2 326 3 2 353 0 1 167 5 6 54 0 1 399 0 1 804 1 0 23 2 1 78 chain 6615 chr5 180915260 + 107769385 107769467 L1PA7 6471 + 6349 6431 180336 82 chain 497940 chr5 180915260 + 107772673 107780339 L1PA7 6471 + 5 6462 6958 238 0 1 8 0 7 146 3 0 7 1 0 61 1 0 104 3 0 38 1 0 125 0 5 56 10 75 376 8 27 276 1 0 179 0 5 948 0 1 314 6 5 60 0 3 142 2 14 65 19 21 217 5 2 47 0 3 423 10 12 394 0 2 7 1338 7 253 0 2 200 1 2 66 3 0 676 0 4 577 0 5 251 chain 96017 chr5 180915260 + 107776978 107778303 LTR12C 1709 - 0 1709 37818 76 23 18 75 0 101 26 0 1 184 11 4 15 24 0 89 2 0 8 1 0 98 0 278 224 9 10 29 11 9 83 0 43 42 4 5 291 chain 26713 chr5 180915260 + 107788446 107788812 THE1B 368 + 0 368 97281 103 8 9 57 1 0 23 2 0 114 0 4 58 chain 124184 chr5 180915260 + 107788857 107790390 THE1B-int 1605 + 45 1605 29636 387 0 25 283 6 8 533 0 1 257 1 0 66 chain 215288 chr5 180915260 + 107790844 107793438 L1PA7 6471 - 6 2601 18145 6 3 0 249 0 2 587 1 0 177 1 2 575 4 3 32 2 0 7 0 2 40 0 1 576 0 1 262 0 1 72 chain 5994 chr5 180915260 + 107798228 107798335 Tigger7 736 + 567 665 185302 71 21 12 15 chain 21364 chr5 180915260 + 107801875 107802418 Tigger4 2445 - 135 536 122640 25 2 1 14 3 2 52 2 0 31 6 5 55 4 8 12 2 1 8 4 0 24 171 35 9 1 0 11 1 0 87 0 2 19 chain 165487 chr5 180915260 + 107810710 107813533 L1PB3 3668 + 4 2504 22593 14 21 16 20 31 22 35 3 0 5 26 21 152 2 0 67 1 2 46 55 60 115 0 4 72 11 14 37 0 1 45 1 0 4 0 1 19 2 3 54 0 4 37 0 1 4 2 0 90 1 4 10 11 13 27 0 1 26 37 21 137 32 31 12 0 1 10 0 8 130 2 0 91 319 0 137 0 1 141 0 1 4 1 0 56 0 1 282 3 0 222 0 2 103 0 5 58 chain 450924 chr5 180915260 + 107827120 107832260 L1PA5 6144 + 976 6139 8743 432 1 6 745 0 1 999 0 11 103 6 7 1731 0 1 30 0 1 958 0 1 27 0 1 95 0 1 13 chain 3337 chr5 180915260 + 107851123 107851181 LTR49 580 - 13 73 218286 27 7 9 24 chain 81902 chr5 180915260 + 107861213 107862269 MER11C 1089 + 0 1073 42804 246 0 9 19 2 1 42 0 4 61 6 5 147 37 38 111 5 9 45 0 1 335 chain 25160 chr5 180915260 + 107866824 107867124 THE1B-int 1605 - 9 309 103959 300 chain 12303 chr5 180915260 + 107869049 107869208 MLT2A2 560 - 0 170 151004 143 0 11 16 chain 4014 chr5 180915260 + 107877150 107877201 L1MB3 1562 + 1471 1522 207172 51 chain 127031 chr5 180915260 + 107887501 107889008 HERVH-int 3825 + 2101 3816 28809 243 1 0 559 2 1 216 8 218 478 chain 41134 chr5 180915260 + 107890268 107890719 LTR7 482 + 0 482 67735 247 0 31 204 chain 157985 chr5 180915260 + 107894094 107895876 SVA_D 2077 - 17 2065 23595 606 0 98 126 0 1 126 1 0 18 0 51 50 0 83 136 0 40 670 0 1 11 12 5 26 chain 250226 chr5 180915260 + 107905872 107909806 HERVH-int 3825 - 0 3667 16235 442 0 8 37 8 218 164 0 3 564 1 7 281 10 15 76 0 4 227 0 1 15 1 0 159 5 18 115 330 0 6 10 0 23 5 0 6 9 5 202 15 0 145 13 14 291 1 0 61 27 114 24 1 21 11 24 3 13 1 0 42 0 1 5 249 11 107 0 1 21 30 29 157 chain 1981 chr5 180915260 + 107909242 107909268 HERVH-int 3825 - 3070 3096 204706 26 chain 2148 chr5 180915260 + 107909301 107909326 HERVH-int 3825 - 3220 3245 237178 25 chain 4042 chr5 180915260 + 107909376 107909423 HERVH-int 3825 - 3293 3340 206771 47 chain 57691 chr5 180915260 + 107909813 107910584 LTR17 781 - 8 781 54139 24 1 23 12 22 0 301 22 21 64 0 1 18 10 0 21 0 1 6 0 2 151 0 9 119 chain 69206 chr5 180915260 + 107913506 107914282 HERV17-int 4347 - 15 792 48718 159 0 1 617 chain 31812 chr5 180915260 + 107925565 107926009 MLT2A1 477 + 0 477 81146 167 6 3 107 1 0 13 0 1 94 7 43 10 7 7 32 chain 35345 chr5 180915260 + 107933445 107933990 MER4B 649 - 0 647 75740 12 5 12 64 1 0 30 45 93 13 7 5 132 0 8 81 0 42 155 chain 12779 chr5 180915260 + 107939392 107939602 MER30 238 - 0 202 149141 29 13 10 60 6 0 7 7 0 10 4 12 74 chain 53479 chr5 180915260 + 107944323 107945917 MER4E1 777 + 0 770 56698 209 11 1 167 2 4 45 309 0 95 58 64 79 513 0 106 chain 37660 chr5 180915260 + 107945302 107945811 LTR10F 562 - 0 562 72601 87 2 0 156 3 0 42 5 11 13 11 63 190 chain 72113 chr5 180915260 + 107946834 107947658 L1PA5 6144 - 0 821 47427 11 3 1 755 1 0 54 chain 126212 chr5 180915260 + 107947701 107949275 THE1B-int 1605 + 0 1597 29029 430 1 26 48 5 3 1090 chain 34959 chr5 180915260 + 107955353 107955782 LTR71A 459 - 0 429 76251 167 2 1 71 0 1 189 chain 25925 chr5 180915260 + 107958313 107958601 AluSp 311 - 15 303 100316 288 chain 4017 chr5 180915260 + 107981881 107981946 L1MC1 2226 - 180 243 207113 44 9 7 12 chain 107822 chr5 180915260 + 108001552 108003418 L1PB1 5432 - 12 1548 34774 16 5 7 6 1 0 21 1 0 24 2 0 14 1 0 4 7 5 10 9 0 7 1 2 8 4 0 17 1 0 20 6 7 31 2 1 51 2 0 10 27 21 24 3 0 9 8 11 41 2 1 237 5 3 105 0 2 67 317 10 119 5 6 357 0 1 187 0 2 72 chain 5461 chr5 180915260 + 108032833 108032942 MER58A 224 + 50 215 190408 33 27 81 9 0 1 35 0 1 5 chain 44432 chr5 180915260 + 108037450 108038019 L1PA8A 6298 - 7 584 63658 140 3 5 31 1 0 113 3 6 27 0 4 251 chain 52300 chr5 180915260 + 108078281 108078901 PABL_A 660 - 2 634 57429 65 0 1 403 0 3 10 1 0 86 0 9 55 chain 103791 chr5 180915260 + 108109656 108110967 L1PA8A 6298 - 10 1331 35774 98 8 0 6 0 7 257 0 2 21 3 0 308 0 5 12 0 2 65 6 10 314 0 1 174 5 0 7 0 5 27 chain 27256 chr5 180915260 + 108113345 108113699 THE1B 368 - 12 368 95415 183 2 1 130 0 5 24 2 0 13 chain 38289 chr5 180915260 + 108120200 108120707 MER9a3 513 - 0 513 71725 76 3 4 175 1 0 70 8 9 13 1 0 107 0 4 35 0 2 18 chain 16553 chr5 180915260 + 108129002 108129333 L1MA2 4263 - 149 457 136784 9 1 0 12 42 35 20 1 2 70 1 0 8 1 0 30 35 15 92 0 6 9 chain 3605 chr5 180915260 + 108135323 108135368 MER53 195 + 141 186 213561 45 chain 22549 chr5 180915260 + 108140754 108141101 THE1B 368 + 0 368 117809 77 19 33 62 11 10 16 0 1 88 8 7 37 0 8 29 chain 123184 chr5 180915260 + 108141101 108142664 THE1B-int 1605 + 0 1605 29982 428 6 31 72 0 1 10 0 10 98 0 1 868 0 5 69 1 0 6 0 1 5 chain 39927 chr5 180915260 + 108149957 108150496 MER41C 542 - 2 539 69428 224 1 2 130 22 19 162 chain 3691 chr5 180915260 + 108158867 108158910 MSTB2 466 - 404 447 212061 43 chain 72619 chr5 180915260 + 108160517 108161566 MER11C 1089 - 26 1089 47205 25 0 1 107 1 2 8 1 0 54 0 1 127 4 5 34 1 0 4 1 5 91 65 64 65 2 0 84 1 0 63 3 7 61 0 9 152 1 0 94 chain 5221 chr5 180915260 + 108168839 108168988 Kanga1a 723 - 53 203 192822 12 3 0 49 1 0 4 58 63 22 chain 10124 chr5 180915260 + 108178790 108178977 L1PB1 5432 - 140 318 159972 11 1 0 44 2 1 15 5 7 47 2 0 9 16 11 9 2 0 24 chain 25291 chr5 180915260 + 108186831 108187188 THE1B 368 - 0 368 103268 34 0 11 148 2 1 17 0 1 19 15 0 82 0 15 40 chain 76780 chr5 180915260 + 108200257 108201102 L1PA4 6152 - 1199 2048 45089 601 0 4 244 chain 102817 chr5 180915260 + 108201110 108202283 L1PA4 6152 + 4965 6138 36050 217 1 0 561 0 1 394 chain 7411 chr5 180915260 + 108227137 108227245 HY1 111 + 0 111 174696 13 9 12 86 chain 144353 chr5 180915260 + 108227376 108228999 L1PA4 6152 - 9 1631 25419 146 5 6 99 1 0 508 1 0 863 chain 28136 chr5 180915260 + 108262953 108263258 AluYb8 318 - 11 317 92522 204 0 1 101 chain 170563 chr5 180915260 + 108267726 108269841 L1PA7 6471 - 2 2074 21987 56 0 1 562 10 8 203 9 0 18 1 0 24 60 0 642 2 0 51 8 0 224 0 4 68 0 2 34 0 1 22 0 31 121 chain 5095 chr5 180915260 + 108294769 108294827 L1MB2 1706 - 12 70 194128 58 chain 35718 chr5 180915260 + 108310641 108311117 L1PA8 5853 + 5370 5853 75246 36 0 12 146 1 0 44 2 0 74 2 1 8 4 5 44 2 1 19 1 0 93 chain 109283 chr5 180915260 + 108321265 108323224 L1PB1 5432 - 106 1693 34375 15 8 0 8 10 7 16 1 0 44 1 0 15 2 1 42 12 10 9 2 0 3 2 0 12 8 6 17 20 18 470 0 4 7 19 5 498 0 2 97 59 58 107 1 0 58 8 0 15 4 0 1 326 0 42 chain 153346 chr5 180915260 + 108327587 108329296 SVA_D 2077 - 9 2065 24177 351 0 1 277 0 226 159 1 138 869 17 0 35 chain 167207 chr5 180915260 + 108330967 108333305 L1PA7 6471 - 1 2061 22368 9 2 0 308 1 2 136 1 0 170 2 3 210 8 11 24 0 1 366 0 1 250 1 0 310 0 4 83 286 0 133 0 1 38 chain 21302 chr5 180915260 + 108332864 108333134 AluY 311 + 40 299 122851 78 11 0 15 1 0 97 0 1 68 chain 281752 chr5 180915260 + 108336133 108339327 L1PA4 6152 + 2916 6151 14547 677 0 22 107 1 0 722 0 12 704 0 1 121 0 4 18 0 4 222 2 0 308 0 1 312 chain 22955 chr5 180915260 + 108344399 108344673 AluSp 311 + 0 284 115824 63 0 10 211 chain 159590 chr5 180915260 + 108348782 108350534 L1PA3long 6157 - 0 1751 23385 625 2 0 646 0 1 479 chain 9449 chr5 180915260 + 108350534 108350641 U6 107 - 0 107 163313 107 chain 4113 chr5 180915260 + 108352720 108352767 MLT1B 390 + 327 374 205736 47 chain 38137 chr5 180915260 + 108361136 108361560 L1P1 4361 - 33 455 71935 23 1 0 155 1 0 244 chain 11695 chr5 180915260 + 108364950 108365079 L1PA3long 6157 - 0 129 153501 129 chain 5075 chr5 180915260 + 108368176 108368236 LTR16C 481 + 421 481 194356 60 chain 17158 chr5 180915260 + 108395019 108395234 AluSc 308 + 76 286 135142 47 8 3 160 chain 165312 chr5 180915260 + 108453510 108455409 L1P1 4361 - 20 1917 22611 12 2 1 23 1 0 154 1 0 163 0 3 592 1 2 138 0 3 46 6 1 26 1 0 733 chain 2586 chr5 180915260 + 108501444 108501476 LTR51 675 - 225 259 231848 7 0 2 25 chain 68717 chr5 180915260 + 108507591 108508347 L1PA3long 6157 + 5403 6157 48939 749 2 0 5 chain 522848 chr5 180915260 + 108544218 108550356 L1PA5 6144 - 12 6141 4882 101 1 0 728 0 9 147 0 5 794 3 0 65 0 1 257 0 1 258 0 1 33 0 12 37 0 4 433 0 3 67 0 1 395 0 2 212 0 4 21 0 3 169 0 1 173 11 13 32 0 1 588 3 0 133 0 11 1206 63 0 208 chain 568189 chr5 180915260 + 108595088 108601119 L1HS 6032 + 0 6032 20 74 0 1 5957 chain 52107 chr5 180915260 + 108604000 108604610 L1PA5 6144 + 5530 6144 57557 156 1 0 42 0 1 399 1 5 11 chain 133153 chr5 180915260 + 108607005 108608589 L1PA7 6471 - 596 2210 27399 159 0 4 12 0 2 74 0 3 31 0 1 62 2 0 53 0 5 514 1 0 147 0 4 124 0 4 88 0 7 261 1 4 55 chain 48627 chr5 180915260 + 108608589 108609166 L1PA7 6471 + 5887 6466 60011 265 0 1 152 3 5 6 2 0 73 0 1 76 chain 22948 chr5 180915260 + 108612380 108612640 L1PA4 6152 - 388 648 115871 260 chain 32711 chr5 180915260 + 108612640 108613013 L1PA4 6152 + 5770 6143 79667 373 chain 38234 chr5 180915260 + 108618890 108619391 MLT2A2 560 - 0 560 71797 8 0 4 191 0 1 4 12 51 97 0 1 113 10 24 66 chain 78406 chr5 180915260 + 108622021 108623026 MER11A 1151 - 0 1151 44317 82 0 4 206 7 41 71 0 4 54 4 7 150 0 1 87 0 1 54 0 1 91 8 4 90 1 4 21 0 99 79 chain 219601 chr5 180915260 + 108627626 108631006 L1PA13 3608 + 94 3486 17912 15 6 4 23 5 2 16 10 9 14 3 0 25 25 17 71 2 0 14 0 2 106 2 1 13 0 2 17 2 0 12 16 12 12 1 0 17 2 0 15 4 3 10 12 11 29 0 14 51 2 0 49 4 3 27 11 0 24 4 9 93 0 3 205 1 3 60 1 0 40 1 35 66 2 0 9 9 9 9 0 2 31 0 3 65 4 1 129 5 11 248 0 1 9 4 6 102 11 15 15 13 7 28 0 3 5 0 4 102 0 4 173 11 2 163 13 18 4 1 0 111 1 0 19 0 1 30 0 2 5 11 16 232 18 0 144 10 11 10 8 12 18 1 0 95 1 0 28 1 0 12 6 5 31 7 11 52 6 4 60 1 0 57 5 2 49 2 0 5 2 0 19 1 0 19 chain 4708 chr5 180915260 + 108632649 108632721 L1PB3 3668 + 3495 3564 198404 8 1 0 25 3 1 35 chain 13138 chr5 180915260 + 108647234 108647405 L1PA8 5853 - 398 573 147689 81 0 3 18 1 2 71 chain 20018 chr5 180915260 + 108647413 108647720 L1PA8 5853 + 5562 5848 127089 48 2 0 69 1 0 14 19 3 43 3 2 14 9 8 85 chain 13296 chr5 180915260 + 108659949 108660153 MER30 238 + 8 232 147098 95 7 0 9 2 26 15 1 7 32 3 0 40 chain 139994 chr5 180915260 + 108676380 108678978 SVA_F 1814 + 11 1565 26145 826 6 6 45 1 0 60 3 18 221 1058 0 378 chain 19910 chr5 180915260 + 108677546 108677916 SVA_F 1814 + 966 1187 127439 123 147 0 88 2 0 10 chain 2432 chr5 180915260 + 108677669 108677696 SVA_F 1814 + 1265 1291 164175 9 1 0 17 chain 1205 chr5 180915260 + 108677724 108677768 SVA_F 1814 + 968 1012 130467 44 chain 728 chr5 180915260 + 108677768 108677816 SVA_F 1814 + 1139 1187 155016 48 chain 8484 chr5 180915260 + 108677916 108678011 SVA_F 1814 + 1010 1105 148088 95 chain 4655 chr5 180915260 + 108678243 108678413 SVA_F 1814 + 1012 1181 130467 164 1 0 5 chain 3316 chr5 180915260 + 108678414 108678599 SVA_F 1814 + 1005 1187 127725 165 3 0 17 chain 38563 chr5 180915260 + 108693742 108694244 MER9a2 513 + 0 494 71351 16 1 0 82 22 13 19 7 0 77 1 10 277 chain 74789 chr5 180915260 + 108733596 108734489 L1PA5 6144 + 5223 6143 46118 68 0 4 148 1 0 77 0 27 264 1 0 50 4 0 30 1 0 73 0 4 21 0 1 142 3 1 10 chain 115282 chr5 180915260 + 108750017 108751545 THE1B-int 1605 + 0 1600 32688 232 0 26 172 1 26 134 1 13 50 11 10 401 0 1 23 18 17 97 7 8 357 0 8 20 0 1 4 chain 8114 chr5 180915260 + 108759534 108759623 MER84 505 + 0 89 170417 89 chain 538348 chr5 180915260 + 108777329 108783343 L1PA3long 6157 - 10 6157 3093 134 1 2 1862 0 1 763 0 1 834 0 1 1644 9 137 615 0 1 152 chain 3863 chr5 180915260 + 108783822 108783868 MADE1 96 - 50 96 209403 46 chain 541279 chr5 180915260 + 108792957 108799080 L1PA4 6152 + 0 6138 2624 52 0 1 1095 0 1 2049 0 5 1016 0 8 190 1 2 882 1 0 837 chain 23491 chr5 180915260 + 108823105 108823391 LTR12C 1709 - 733 1018 113171 139 1 0 146 chain 21811 chr5 180915260 + 108840686 108840939 L1PA5 6144 + 5887 6142 120976 5 0 2 248 chain 7529 chr5 180915260 + 108854648 108854762 Tigger1 2417 + 2242 2355 173982 9 2 0 69 2 1 5 0 1 7 0 1 20 chain 6456 chr5 180915260 + 108858654 108858732 L1PA16 3655 - 77 157 181594 23 0 2 55 chain 63125 chr5 180915260 + 108867566 108868248 L1PA2 6032 + 5349 6031 51390 682 chain 23292 chr5 180915260 + 108870256 108870511 L1PA4 6152 - 814 1069 114243 255 chain 52315 chr5 180915260 + 108870511 108871095 L1PA4 6152 + 5353 5937 57418 584 chain 19400 chr5 180915260 + 108871095 108871308 L1PA4 6152 + 5938 6151 128948 213 chain 441341 chr5 180915260 + 108874504 108879835 L1PA7 6471 + 1111 6469 9016 83 0 11 38 5 2 390 1 4 114 1 0 120 0 1 575 0 2 147 7 0 43 26 4 1064 4 8 85 0 12 175 0 6 264 1 0 4 0 1 406 0 8 276 0 1 10 0 1 246 0 1 150 1 6 164 3 11 80 1 0 661 1 0 47 0 1 10 1 2 109 3 0 15 chain 16718 chr5 180915260 + 108899438 108899745 L1MA5A 2387 - 80 350 136347 12 1 0 21 0 2 31 35 11 12 3 0 33 10 0 75 6 5 68 chain 34256 chr5 180915260 + 108900232 108900715 L1PA8 5853 - 0 449 77269 93 1 0 15 1 0 54 35 4 5 1 0 15 0 1 4 1 0 54 2 0 44 1 0 137 0 2 8 0 1 12 chain 35165 chr5 180915260 + 108938231 108938610 L1PA4 6152 + 5520 5899 75961 379 chain 21161 chr5 180915260 + 108938616 108938865 L1PA4 6152 + 5906 6152 123337 241 3 0 5 chain 485729 chr5 180915260 + 108957495 108962936 L1PA3long 6157 - 0 6157 7531 147 0 1 346 0 16 51 2 1 230 0 1 798 0 1 613 0 168 51 1 0 1881 0 5 1225 0 526 96 chain 19334 chr5 180915260 + 108966467 108966701 L1PA6 6164 - 2 236 129129 155 1 0 4 0 1 74 chain 55237 chr5 180915260 + 108968600 108969229 L1PA7 6471 - 4 633 55560 629 chain 8036 chr5 180915260 + 108996918 108997027 L1MA8 2339 + 1931 2037 170831 22 2 0 56 1 0 28 chain 19734 chr5 180915260 + 109028435 109028746 MER1B 344 - 10 299 127999 49 35 18 174 18 13 35 chain 5307 chr5 180915260 + 109035077 109035188 L1MA8 2339 + 2160 2265 191938 33 8 2 10 14 15 37 1 0 8 chain 19161 chr5 180915260 + 109035302 109035535 7SK 245 - 9 245 129642 70 0 3 163 chain 12508 chr5 180915260 + 109056282 109056497 MER30 238 - 1 238 150215 79 0 6 25 4 0 7 42 62 58 chain 3185 chr5 180915260 + 109057203 109057242 MER53 195 - 107 146 221209 39 chain 385312 chr5 180915260 + 109067064 109071378 L1PA3long 6157 - 0 6151 10596 1864 0 1 242 0 1 829 12 5 26 1 0 668 1 0 541 0 1844 130 chain 5457 chr5 180915260 + 109076634 109076700 MADE2 80 + 0 66 190445 66 chain 4293 chr5 180915260 + 109087223 109087273 L1MA4A 3247 - 165 215 203323 50 chain 65627 chr5 180915260 + 109095706 109096519 L1PA7 6471 - 18 841 50282 55 3 2 91 0 2 5 0 2 6 3 1 136 0 1 20 0 1 255 0 5 170 1 3 68 chain 6195 chr5 180915260 + 109096519 109096591 L1P1 4361 - 1060 1132 180267 72 chain 8869 chr5 180915260 + 109099225 109099319 L1PA3long 6157 - 3 97 166293 94 chain 4014 chr5 180915260 + 109099319 109099364 L1PA3long 6157 + 5842 5887 207185 45 chain 3130 chr5 180915260 + 109138091 109138148 MER46C 351 - 266 322 222358 26 10 9 21 chain 126446 chr5 180915260 + 109167874 109169386 SVA_B 1603 - 0 1602 28958 552 0 36 11 0 36 43 4 0 33 0 40 221 39 0 435 5 4 148 0 22 21 chain 16723 chr5 180915260 + 109176870 109177186 L1PB1 5432 - 12 298 136333 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 19 7 21 2 1 42 1 0 18 1 0 49 20 14 9 1 0 13 chain 28340 chr5 180915260 + 109255759 109256233 L1PA15 4387 - 61 520 91797 10 2 0 39 13 10 50 22 17 15 1 0 54 1 0 27 5 4 28 7 8 132 1 0 42 2 0 23 chain 3707 chr5 180915260 + 109289113 109289219 MER5A 189 + 37 146 211844 28 50 53 28 chain 29268 chr5 180915260 + 109297101 109297408 AluYa5 310 - 3 310 87697 307 chain 140123 chr5 180915260 + 109340227 109342386 L1PA7 6471 - 1 5698 26126 12 1 7 140 2 3 157 163 8 133 0 6 302 0 1 82 1 3 36 0 1 102 0 2 306 174 3849 367 1 0 180 chain 14149 chr5 180915260 + 109340539 109340701 L1PA7 6471 - 406 568 144042 162 chain 11631 chr5 180915260 + 109341694 109341830 MER11A 1151 + 1004 1144 153773 103 0 4 33 chain 19790 chr5 180915260 + 109344930 109345180 L1PA7 6471 - 17 264 127849 135 5 0 9 1 3 100 chain 70727 chr5 180915260 + 109349710 109350523 L1PA5 6144 + 5331 6144 48052 813 chain 9724 chr5 180915260 + 109360961 109361082 MSTA 426 + 0 122 161965 103 0 1 18 chain 20186 chr5 180915260 + 109361256 109361626 L1PA15 4387 + 3830 4200 126574 47 0 3 10 5 3 39 1 0 62 3 4 38 1 0 6 3 5 27 0 1 9 26 25 20 2 1 36 1 2 5 1 0 10 1 0 17 chain 203859 chr5 180915260 + 109376413 109379558 L1PA11 4918 - 289 3714 18935 19 2 0 4 2 0 7 3 1 4 1 0 11 27 28 12 49 39 16 2 1 15 2 0 65 3 0 13 19 18 44 12 0 199 8 8 22 11 180 25 1 0 4 4 5 77 5 9 49 51 24 68 1 0 473 3 1 157 0 2 54 9 1 31 1 0 86 1 2 15 1 2 191 7 23 57 44 21 219 24 34 29 0 4 17 1 0 97 8 10 181 0 166 292 9 6 25 0 3 54 2 0 26 0 1 46 0 1 34 5 6 52 6 8 31 chain 40056 chr5 180915260 + 109441797 109442331 MER41A 554 + 14 547 69239 245 8 10 84 1 0 40 6 4 150 chain 40089 chr5 180915260 + 109461046 109462992 L1PA10 4194 - 34 1981 15080 10 1 0 34 3 0 9 1 2 17 7 8 5 3 0 117 0 1 4 1 0 997 11 2 188 2 9 38 4 0 9 0 4 367 0 4 109 0 4 9 chain 439343 chr5 180915260 + 109463017 109472109 L1PA7 6471 - 2 6468 9067 12 0 1 37 0 1 287 12 11 371 1 0 4 0 1 124 4 7 210 0 2 119 0 1 4 1 0 327 2 0 220 0 1 98 4 5 428 3273 160 22 15 12 117 0 10 210 0 1 59 0 1 10 0 3 19 0 2 18 0 4 363 1 0 252 2 255 38 8 9 14 7 0 35 0 2 245 13 11 5 0 3 150 1 0 4 0 1 101 33 77 69 0 84 15 0 2 383 0 1 43 0 66 10 0 7 80 8 12 696 12 18 86 0 1 196 4 3 210 chain 7438 chr5 180915260 + 109465907 109466003 L1P3 4156 + 4046 4139 174527 61 2 0 9 1 0 23 chain 32869 chr5 180915260 + 109466640 109467095 L1PA7 6471 - 1 461 79422 12 1 0 4 5 6 9 0 2 31 0 1 73 22 24 298 chain 28024 chr5 180915260 + 109467131 109467466 L1PA7 6471 - 503 841 92917 243 0 3 92 chain 64353 chr5 180915260 + 109467480 109468275 L1PA7 6471 - 858 1652 50861 621 7 8 35 2 0 95 1 0 5 0 1 29 chain 11980 chr5 180915260 + 109468275 109468419 L1PA7 6471 - 1653 1797 152289 144 chain 10496 chr5 180915260 + 109468419 109468547 L1PA7 6471 - 1805 1933 158265 128 chain 43797 chr5 180915260 + 109472124 109474250 L1PA10 4194 - 1981 4016 15080 186 8 12 15 1 0 170 0 5 123 3 1 60 29 24 485 36 7 192 1 2 266 2 0 175 11 2 85 1 0 8 7 0 13 1 0 7 0 3 9 1 0 5 5 4 19 72 44 4 1 0 16 2 0 21 1 0 18 2 0 10 30 21 11 2 0 12 chain 13470 chr5 180915260 + 109475824 109475981 L1PA6 6164 - 279 435 146448 59 1 0 97 chain 15898 chr5 180915260 + 109475988 109476182 L1PA6 6164 + 5954 6149 138663 56 0 1 138 chain 75365 chr5 180915260 + 109479084 109479983 L1PA5 6144 - 10 912 45836 329 1 0 471 20 24 78 chain 38633 chr5 180915260 + 109492162 109492706 MLT2A2 560 - 0 559 71247 69 0 1 73 0 11 181 28 29 16 1 0 93 3 6 80 chain 21694 chr5 180915260 + 109492709 109492949 L1PA2 6032 - 17 256 121412 4 1 0 235 chain 19430 chr5 180915260 + 109506745 109507055 THE1C 375 + 0 314 128871 113 4 5 68 26 27 66 13 15 20 chain 182024 chr5 180915260 + 109507770 109509782 L1PA3long 6157 - 4 2016 20780 249 1 0 1233 0 1 529 chain 146617 chr5 180915260 + 109521836 109523665 L1PA7 6471 - 6 1848 25068 333 0 1 209 0 6 216 0 2 74 0 1 415 4 8 160 4 0 183 5 6 35 10 12 181 chain 76767 chr5 180915260 + 109523665 109524665 L1PA7 6471 + 3618 4595 45095 32 0 7 267 20 7 22 0 16 29 33 0 597 chain 363811 chr5 180915260 + 109539812 109544471 HERVL-int 5654 - 969 5654 11267 307 7 11 187 0 1 34 0 12 39 0 2 41 4 0 157 9 15 539 1 0 82 0 1 749 1 4 240 0 7 196 9 5 92 0 2 38 13 15 389 1 0 34 1 2 443 4 5 138 1 0 129 3 1 63 1 2 688 4 0 15 chain 398783 chr5 180915260 + 109548586 109553335 L1PA5 6144 - 16 6144 10146 1676 0 1353 70 1 0 362 0 20 337 1 0 124 2 0 251 2 0 97 0 4 417 0 3 5 4 1 194 0 1 43 9 0 804 0 1 171 1 2 43 0 14 135 chain 109312 chr5 180915260 + 109571831 109573054 L1PA4 6152 - 11 1234 34366 847 1 0 182 0 1 193 chain 56976 chr5 180915260 + 109573054 109573700 L1PA4 6152 + 4263 4914 54281 85 0 4 372 0 1 189 chain 43021 chr5 180915260 + 109576913 109577390 L1PA3long 6157 - 0 477 65396 477 chain 16142 chr5 180915260 + 109584923 109585121 Tigger3a 397 + 126 324 137927 198 chain 535768 chr5 180915260 + 109614367 109620497 L1PA4 6152 - 0 6151 3483 922 0 10 685 0 1 44 0 2 321 1 2 176 1 0 68 0 1 244 0 1 162 0 4 255 0 3 498 0 2 119 0 1 1941 0 3 106 2 1 120 6 0 459 chain 2684 chr5 180915260 + 109624399 109624762 MLT2F 649 - 229 626 230390 29 314 348 20 chain 29433 chr5 180915260 + 109650948 109651330 MLT2A1 477 - 94 477 86930 178 0 1 22 0 1 11 4 1 77 12 14 78 chain 27914 chr5 180915260 + 109651340 109651697 HERVL-int 5654 - 10 377 93308 63 0 3 214 0 3 9 0 4 71 chain 5126 chr5 180915260 + 109651713 109651770 HERVL-int 5654 - 4479 4536 193824 57 chain 91400 chr5 180915260 + 109651786 109652900 HERVL-int 5654 - 4542 5654 39164 343 2 0 769 chain 68038 chr5 180915260 + 109653439 109654211 L1PA5 6144 + 5373 6144 49232 753 1 0 18 chain 62036 chr5 180915260 + 109687947 109688627 L1PA3long 6157 - 0 680 51884 680 chain 4649 chr5 180915260 + 109729293 109729375 L1MA3 4352 - 95 174 199065 22 4 0 33 2 3 21 chain 39937 chr5 180915260 + 109748700 109749240 MLT2A2 560 + 0 553 69413 120 0 1 58 2 1 185 3 5 29 8 19 135 chain 25438 chr5 180915260 + 109819172 109819452 L1PA4 6152 + 5863 6143 102505 280 chain 207707 chr5 180915260 + 109821038 109824006 L1PB1 5432 - 17 2908 18661 11 1 0 13 1 0 5 0 7 9 1 0 24 74 50 16 1 0 43 1 0 17 1 0 8 1 0 45 2 0 9 26 20 24 17 12 49 9 3 10 2 3 142 0 1 32 1 0 17 44 41 96 1 0 69 8 9 276 0 2 145 0 2 249 1 0 84 0 3 145 0 5 214 1 2 341 0 2 95 10 13 13 10 13 126 57 0 5 2 0 50 0 7 314 chain 3270 chr5 180915260 + 109823583 109823620 L1PB1 5432 - 2494 2531 219594 37 chain 11205 chr5 180915260 + 109827791 109827914 L1PA4 6152 + 6028 6151 155398 123 chain 31165 chr5 180915260 + 109829486 109829877 L1PA7 6471 - 2 410 82228 11 0 2 4 1 0 141 3 4 59 0 13 15 0 1 82 0 1 75 chain 70610 chr5 180915260 + 109846284 109847155 L1PA7 6471 + 5599 6469 48111 19 4 3 107 1 2 576 2 3 150 2 0 10 chain 206623 chr5 180915260 + 109867034 109869573 HERVH-int 3825 + 0 3825 18745 89 0 5 206 9 1041 338 10 37 589 0 1 38 1 0 57 4 7 662 9 11 27 12 222 23 6 0 5 3 9 9 0 4 59 3 0 6 1 4 49 0 2 197 1 2 126 chain 23636 chr5 180915260 + 109870818 109871214 LTR7 482 + 0 482 112378 49 28 66 97 20 52 50 0 10 62 3 7 26 12 14 49 chain 30840 chr5 180915260 + 109889766 109890212 MLT2A1 477 + 4 477 82788 166 4 1 8 0 1 24 0 1 58 13 11 111 10 0 8 17 57 27 chain 8168 chr5 180915260 + 109893044 109893145 L1P4e 1373 - 74 173 170129 25 2 0 74 chain 21402 chr5 180915260 + 109926396 109926766 THE1D 372 - 12 372 122501 23 2 1 32 1 0 54 6 12 45 12 15 103 37 18 14 5 7 36 chain 15460 chr5 180915260 + 109929227 109929648 L1MA3 4352 + 3936 4332 140020 45 22 24 67 114 92 22 0 1 5 1 0 8 0 1 49 11 9 23 1 0 6 1 0 19 11 10 11 1 0 4 chain 450742 chr5 180915260 + 109930412 109938998 L1PA8 5853 + 108 5853 8747 114 13 25 27 0 4 6 3 0 21 0 4 309 1 2 59 1 0 5 0 1 861 2891 0 46 3 0 431 1 3 114 0 4 24 2 0 295 0 1 17 0 4 338 0 1 58 1 0 316 0 4 19 0 4 9 11 5 156 1 4 78 0 1 164 0 1 39 0 1 100 0 4 269 3 10 940 0 4 67 2 0 304 0 2 181 1 0 43 3 1 71 1 0 61 2 1 9 19 27 76 chain 258265 chr5 180915260 + 109931847 109934722 L1PA3long 6157 + 3276 6157 15795 411 0 1 4 1 0 663 5 7 690 0 1 231 0 4 102 1 0 767 chain 8881 chr5 180915260 + 109955519 109955627 L1PA5 6144 + 6035 6141 166223 99 2 0 7 chain 31167 chr5 180915260 + 109958149 109958484 L1PA3long 6157 - 255 590 82225 335 chain 19549 chr5 180915260 + 109958484 109958703 L1PA3long 6157 + 5938 6156 128522 214 1 0 4 chain 6483 chr5 180915260 + 109971397 109971708 L1MA4A 3247 + 2897 3169 181372 14 9 0 11 5 0 17 20 8 16 72 72 55 71 58 21 chain 59036 chr5 180915260 + 109989978 109990632 L1PA3long 6157 - 1127 1783 53372 235 0 2 419 chain 101815 chr5 180915260 + 109990636 109991758 L1PA3long 6157 + 5027 6149 36311 280 1 0 791 0 1 50 chain 255762 chr5 180915260 + 110004295 110026857 L1PA7 6471 + 2923 6470 15947 561 1 2 5 1 0 6 1 0 339 5 4 1005 19001 0 104 1 0 36 1 0 632 1 4 25 0 9 633 20 21 87 27 5 57 2 1 11 chain 67847 chr5 180915260 + 110006791 110007603 L1PA7 6471 + 5651 6464 49308 202 0 1 277 0 1 83 0 2 242 3 0 5 chain 49697 chr5 180915260 + 110008603 110009153 L1PA4 6152 + 5590 6140 59237 550 chain 535755 chr5 180915260 + 110028015 110034150 L1PA4 6152 + 0 6152 3486 526 4 0 1903 0 3 871 0 1 302 1 0 332 1 2 407 0 4 134 0 2 884 5 6 119 4 15 380 0 1 111 0 1 142 3 0 6 chain 22064 chr5 180915260 + 110047830 110048237 L1MA2 4263 + 3294 3700 119947 109 11 12 52 18 23 77 2 0 17 68 64 14 1 0 38 chain 122602 chr5 180915260 + 110066535 110068075 THE1A-int 1579 - 5 1574 30191 356 0 25 569 22 24 346 0 7 6 8 1 68 0 1 10 3 4 152 chain 26023 chr5 180915260 + 110068080 110068434 THE1A 353 - 0 353 99931 155 1 0 84 9 8 92 3 4 10 chain 375700 chr5 180915260 + 110110313 110114428 L1PA2 6032 + 1918 6032 10896 1276 1 0 2838 chain 142548 chr5 180915260 + 110114548 110116403 L1PA6 6164 - 397 4362 25717 144 6 0 9 0 6 292 0 4 212 0 1 4 1 0 203 1 2104 60 4 5 390 1 3 528 chain 14354 chr5 180915260 + 110116408 110116577 L1PA6 6164 + 1614 1785 143359 133 0 1 4 0 1 32 chain 126401 chr5 180915260 + 110118595 110120002 L1PA4 6152 - 1 1412 28971 1054 0 1 36 0 3 317 chain 131600 chr5 180915260 + 110123606 110125493 L1PA7 6471 - 22 1626 27717 120 0 4 326 0 2 279 299 0 76 0 1 12 0 7 709 0 2 66 chain 61140 chr5 180915260 + 110125510 110126241 L1PA7 6471 + 4077 4812 52276 594 7 11 130 chain 9287 chr5 180915260 + 110126241 110126439 Tigger3 1187 - 489 686 164131 14 4 0 9 4 11 34 9 8 20 12 11 18 1 0 36 1 0 36 chain 96255 chr5 180915260 + 110127857 110129465 L1PB1 5432 - 25 1552 37747 4 1 0 12 1 0 21 1 0 24 45 33 17 14 11 4 1 0 40 45 43 31 2 0 6 8 4 11 1 0 12 1 0 9 24 22 117 1 2 140 32 40 10 9 1 81 1 0 77 10 7 41 60 12 12 0 1 124 17 17 541 chain 27387 chr5 180915260 + 110135844 110136213 THE1B 368 - 0 368 95014 67 11 10 117 3 2 64 0 1 107 chain 23415 chr5 180915260 + 110136493 110136826 MER51B 395 + 0 336 113570 34 18 5 30 4 21 155 1 0 91 chain 43637 chr5 180915260 + 110170877 110171358 L1PA4 6152 + 5411 5892 64644 481 chain 43583 chr5 180915260 + 110173830 110174372 MLT2A2 560 - 0 553 64704 196 0 12 44 2 1 300 chain 82524 chr5 180915260 + 110192284 110193275 L1PA7 6471 + 5467 6467 42527 155 2 0 78 0 2 298 1 0 136 0 1 175 1 10 145 chain 15484 chr5 180915260 + 110195571 110195754 L1PA6 6164 - 5 186 139942 5 2 0 176 chain 167753 chr5 180915260 + 110220113 110222742 MER57-int 2662 + 41 2322 22310 29 52 32 5 0 1 196 11 9 90 0 2 411 2 0 145 320 0 122 0 1 8 4 0 108 0 1 108 0 3 90 1 0 3 1 0 34 0 1 249 0 1 15 0 1 135 17 0 64 8 4 50 13 17 74 0 7 11 30 31 223 chain 28932 chr5 180915260 + 110221064 110221374 AluYa5 310 - 0 310 89314 310 chain 473405 chr5 180915260 + 110222763 110228579 L1PA7 6471 - 11 5845 7935 4 0 1 56 0 2 397 1 0 263 0 2 111 1 2 303 4 5 202 3 7 156 1 0 269 0 12 287 0 1 134 0 2 52 9 0 363 7 1 266 9 13 52 1 0 343 0 1 53 1 5 168 0 1 246 0 1 38 21 0 667 4 11 601 0 1 4 1 0 126 0 4 358 39 48 195 chain 10239 chr5 180915260 + 110228595 110228740 MER57-int 2662 + 2334 2473 159428 90 18 12 37 chain 120315 chr5 180915260 + 110228740 110230253 LTR12C 1709 - 0 1709 30934 84 1 0 397 0 4 106 1 158 123 1 0 366 6 7 74 9 52 37 1 2 65 3 0 16 7 6 138 0 1 28 5 0 45 chain 138447 chr5 180915260 + 110240254 110241859 L1PA5 6144 - 2096 3706 26376 373 1 0 452 0 4 126 1 0 95 0 1 73 0 1 79 6 7 399 chain 179878 chr5 180915260 + 110241859 110243947 L1PA5 6144 + 4056 6142 21004 976 0 2 260 1 0 695 1 2 144 4 0 7 chain 226793 chr5 180915260 + 110265218 110268672 L1PA11 4918 - 1726 4911 17491 149 0 10 262 324 10 219 1 0 3 5 0 201 0 1 47 0 3 6 3 0 295 0 10 21 6 7 108 0 4 21 1 2 236 3 2 34 7 9 232 14 14 207 0 10 199 0 3 185 2 0 118 0 4 61 21 27 12 0 1 25 0 4 8 1 0 15 0 1 16 1 0 39 4 5 127 16 13 26 1 0 50 2 0 17 10 9 25 0 5 8 0 1 23 3 1 34 chain 535138 chr5 180915260 + 110269688 110275811 L1PA4 6152 + 8 6152 3575 266 0 1 460 1 0 284 4 5 32 8 9 390 0 1 215 1 0 511 0 2 987 1 0 318 1 0 860 0 3 274 0 1 674 1 0 197 0 11 632 0 5 6 chain 16165 chr5 180915260 + 110296018 110296216 L1PA7 6471 + 6266 6465 137858 19 1 2 178 chain 32877 chr5 180915260 + 110320288 110320660 L1PA3long 6157 + 5767 6146 79402 245 0 7 127 chain 504886 chr5 180915260 + 110321445 110327430 L1PA5 6144 + 3 6132 6546 107 1 11 26 16 13 209 0 4 187 10 9 122 7 0 63 9 137 1303 0 2 1057 0 4 963 1 3 1074 0 4 393 0 1 437 chain 44647 chr5 180915260 + 110327468 110328150 L1PA11 4918 + 3902 4567 63433 194 13 14 120 0 4 94 4 0 54 12 12 18 1 0 62 6 4 9 4 3 12 3 0 6 18 12 15 8 4 15 1 0 13 chain 38843 chr5 180915260 + 110335032 110335611 LTR10E 629 + 0 629 70958 28 0 1 66 26 79 122 4 3 25 0 3 52 1 0 154 1 0 10 30 27 52 1 0 7 chain 32443 chr5 180915260 + 110344370 110344764 L1PA7 6471 - 19 412 80122 131 1 0 262 chain 24116 chr5 180915260 + 110349516 110349793 L1PA7 6471 - 7 284 109658 277 chain 533258 chr5 180915260 + 110365434 110371553 L1PA4 6152 + 1 6151 3813 103 0 2 338 16 17 1322 0 2 244 0 1 356 0 4 304 0 5 113 0 14 381 2 0 732 5 1 281 1 3 918 0 1 161 2 6 649 0 1 191 chain 115283 chr5 180915260 + 110374906 110376178 L1PA3long 6157 + 4884 6157 32685 961 0 1 311 chain 37221 chr5 180915260 + 110384648 110385051 L1PA2 6032 - 4 407 73207 403 chain 312094 chr5 180915260 + 110387862 110391894 L1PA8A 6298 - 9 4041 12922 94 3 4 701 2 1 80 1 0 194 0 8 354 11 12 19 1 2 415 1 0 53 0 1 218 0 2 261 0 1 70 1 0 4 0 1 45 4 5 46 1 0 223 1 0 77 0 1 30 1 0 6 1 0 245 12 13 22 7 6 336 1 0 223 9 6 87 7 0 66 30 31 69 chain 14763 chr5 180915260 + 110397086 110397283 MER30 238 - 0 208 142055 46 3 0 64 4 18 80 chain 7520 chr5 180915260 + 110418291 110418394 MLT1A1 405 + 299 403 174044 37 1 2 65 chain 518820 chr5 180915260 + 110420825 110426605 L1PA3long 6157 - 245 6157 5291 3222 2 0 871 0 2 913 8 136 21 4 6 257 1 2 329 0 1 152 chain 28749 chr5 180915260 + 110474495 110474803 L1HS 6032 + 5724 6032 90125 308 chain 171658 chr5 180915260 + 110475052 110477812 L1PB2 3958 + 1385 3812 21862 172 50 42 85 0 6 331 0 1 121 1 2 28 0 1 68 3 7 11 331 0 126 1 0 92 24 14 83 0 2 11 0 2 58 0 1 69 0 1 129 6 12 64 1 0 238 0 9 63 0 1 72 2 0 56 5 4 72 18 12 41 1 0 18 4 0 42 1 2 57 7 6 64 1 0 53 1 2 5 1 0 12 2 0 59 chain 6567 chr5 180915260 + 110484930 110485026 LTR47A 437 + 332 429 180727 61 10 11 25 chain 26806 chr5 180915260 + 110495135 110495513 L1PA8 5853 - 0 370 96953 60 0 13 20 1 0 19 2 1 51 1 0 10 8 0 53 0 3 13 2 0 48 1 0 46 0 1 8 11 0 24 chain 12047 chr5 180915260 + 110496387 110496650 L1PB1 5432 - 12 252 151999 16 1 0 13 1 0 21 1 0 23 3 1 14 8 5 10 38 26 10 1 0 44 1 0 15 3 2 40 chain 36049 chr5 180915260 + 110517515 110517913 L1PA2 6032 + 5634 6032 74834 398 chain 4630 chr5 180915260 + 110524175 110524224 L1HS 6032 - 243 292 199296 49 chain 7978 chr5 180915260 + 110524224 110524309 L1PA2 6032 + 5944 6029 171186 85 chain 25920 chr5 180915260 + 110594052 110594413 THE1A 353 - 0 353 100337 57 1 0 94 1 0 92 2 1 20 13 8 81 chain 28088 chr5 180915260 + 110603132 110603429 AluYd8 298 + 0 297 92691 297 chain 25466 chr5 180915260 + 110606522 110606892 THE1D 372 - 0 372 102372 81 0 2 50 8 14 25 3 0 5 1 7 131 10 1 56 chain 565806 chr5 180915260 + 110637936 110643960 L1HS 6032 + 7 6031 171 6024 chain 70339 chr5 180915260 + 110660545 110661542 L1PA8 5853 - 0 964 48248 93 1 0 19 2 1 16 0 1 43 2 1 71 2 0 44 1 0 52 33 21 138 20 19 141 22 6 180 0 1 117 chain 169461 chr5 180915260 + 110662769 110664642 L1PA4 6152 - 62 1934 22119 811 1 0 1061 chain 44474 chr5 180915260 + 110664642 110665155 L1PA4 6152 + 3704 4218 63266 45 0 1 468 chain 9383 chr5 180915260 + 110666289 110666437 MER2 342 + 182 328 163642 109 21 19 18 chain 43445 chr5 180915260 + 110667780 110668271 L1PA3long 6157 - 0 492 64878 171 1 2 319 chain 121774 chr5 180915260 + 110691204 110692535 L1PA3long 6157 - 1 1333 30457 6 0 1 1325 chain 3200 chr5 180915260 + 110695429 110695483 L1PREC2 3366 - 322 374 220939 34 6 4 14 chain 31412 chr5 180915260 + 110716894 110717402 MLT2A2 560 - 0 560 81792 69 0 1 77 10 21 126 59 70 16 1 0 21 0 20 28 5 14 88 0 1 8 chain 9631 chr5 180915260 + 110751505 110751694 MER2 342 + 58 278 162432 11 0 2 9 24 52 85 18 19 42 chain 8400 chr5 180915260 + 110753782 110754132 MER11C 1089 - 25 377 46058 144 1 0 54 0 1 88 1 2 31 6 7 25 chain 183965 chr5 180915260 + 110754148 110756206 L1PA4 6152 - 0 2070 20592 6 0 7 1548 0 1 235 0 4 269 chain 16728 chr5 180915260 + 110756206 110756903 MER11C 1089 - 377 1089 46058 13 1 0 7 0 4 18 0 1 91 47 46 146 1 0 68 1 5 57 4 13 243 chain 110609 chr5 180915260 + 110765521 110767402 L1MA1 4479 + 2413 4190 34049 66 1 4 26 12 2 159 1 0 96 7 5 33 1 0 57 7 5 37 0 6 49 1 0 25 2 0 87 14 22 46 32 29 11 8 4 69 1 0 12 5 0 34 19 18 70 20 17 118 3 0 46 2 0 11 21 0 4 0 1 7 7 0 61 42 14 51 1 0 21 5 3 16 1 0 71 1 0 15 9 7 5 1 0 71 0 1 22 1 0 5 11 8 118 1 0 27 2 0 34 1 0 12 1 0 5 3 0 16 6 0 18 chain 4604 chr5 180915260 + 110823399 110823450 MER3 215 - 115 166 199578 51 chain 25668 chr5 180915260 + 110890694 110891086 L1PA8 5853 - 9 529 101410 84 1 0 19 2 1 52 2 1 7 1 0 72 2 0 46 1 0 46 25 160 32 chain 5992 chr5 180915260 + 110891594 110891674 MADE1 96 + 0 96 185313 32 1 17 47 chain 4545 chr5 180915260 + 110892033 110892086 L1MA7 2200 - 149 202 200281 53 chain 410667 chr5 180915260 + 110901304 110905905 L1PA4 6152 - 16 4623 9783 97 0 1 563 0 1 2096 0 1 169 1 0 358 2 1 139 8 8 856 0 5 312 chain 476305 chr5 180915260 + 110911209 110916541 L1PA3long 6157 - 1 5463 7850 2410 2 0 1163 0 3 1060 0 1 615 4 132 78 chain 7976 chr5 180915260 + 110926552 110926893 MER67C 710 + 0 236 171195 68 0 59 9 223 59 41 chain 7387 chr5 180915260 + 110926929 110927023 L1PA16 3655 - 752 850 174860 17 0 4 77 chain 166312 chr5 180915260 + 110927898 110929913 L1PA7 6471 + 4453 6466 22483 243 0 1 4 5 4 792 1 0 124 0 3 417 0 2 264 13 13 138 6 0 8 chain 2403 chr5 180915260 + 110932023 110932065 MER52A 1651 + 785 827 234193 6 1 0 22 1 2 12 chain 96036 chr5 180915260 + 110946981 110948421 LTR12C 1709 - 2 1709 37808 80 1 0 86 0 102 106 1 0 50 0 1 54 41 10 25 0 207 149 1 0 255 1 6 7 5 0 56 73 59 158 56 63 129 0 1 34 14 11 58 chain 113030 chr5 180915260 + 110962063 110963575 THE1B-int 1605 + 5 1594 33368 290 0 1 45 7 0 20 17 98 64 1 0 106 1 9 353 11 8 300 3 0 72 10 11 212 chain 27045 chr5 180915260 + 110974548 110974921 THE1C 375 + 0 375 96131 50 1 0 53 9 11 68 3 4 189 chain 111981 chr5 180915260 + 110974939 110976453 THE1C-int 1605 + 17 1593 33672 78 0 57 13 4 1 21 1 0 140 0 6 51 1 0 61 4 11 76 0 1 104 6 8 105 22 16 36 0 1 173 2 0 196 8 9 412 chain 24487 chr5 180915260 + 110977015 110977310 AluSc 308 + 0 292 107618 85 3 0 207 chain 121024 chr5 180915260 + 110988443 110989972 THE1A-int 1579 - 0 1574 30686 46 0 1 260 1 0 125 4 5 390 0 1 49 0 31 113 0 1 46 7 6 88 2 4 101 5 12 184 0 3 108 chain 116992 chr5 180915260 + 110996167 110997706 THE1B-int 1605 - 0 1605 32132 47 1 0 38 18 27 138 4 2 54 3 0 280 3 0 315 0 1 244 0 64 184 0 1 210 chain 221767 chr5 180915260 + 110999068 111002187 MER61-int 3695 - 0 3165 17767 35 18 18 287 2 1 21 41 41 130 2 0 11 3 0 280 4 0 39 0 1 59 8 7 149 33 11 56 0 3 134 12 27 123 6 15 130 1 0 239 9 13 241 0 5 11 0 4 65 2 0 64 1 0 4 0 1 33 5 6 134 58 32 383 9 4 18 14 0 10 23 2 75 6 7 29 1 0 4 0 97 69 7 16 21 chain 498917 chr5 180915260 + 111046893 111052938 L1PA7 6471 - 1 6062 6902 70 2 0 35 9 1 34 0 1 48 1 0 581 0 2 84 9 8 63 1 0 587 0 1 283 0 4 456 0 2 458 24 25 148 0 5 933 12 0 16 0 1 457 0 4 46 8 9 532 0 12 218 1 0 4 0 1 110 0 4 157 1 2 277 0 1 8 0 1 372 chain 2924 chr5 180915260 + 111058180 111058213 U2 167 - 134 167 226601 33 chain 49214 chr5 180915260 + 111059273 111059814 L1P1 4361 - 244 785 59581 541 chain 3853 chr5 180915260 + 111060264 111060559 Charlie2a 992 - 423 736 209609 13 9 0 25 215 242 33 chain 27358 chr5 180915260 + 111100002 111100357 THE1B 368 - 0 368 95084 30 0 1 37 2 0 131 1 0 114 7 22 33 chain 24391 chr5 180915260 + 111107183 111107483 AluSp 311 + 6 305 108129 126 1 0 173 chain 39171 chr5 180915260 + 111134090 111135110 L1PB1 5432 - 11 1600 70506 17 1 0 9 0 3 22 1 0 24 2 0 14 10 7 12 23 13 4 1 0 15 5 4 25 29 21 10 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 346 947 204 0 1 130 chain 23591 chr5 180915260 + 111140422 111140696 AluY 311 + 6 281 112624 126 0 1 148 chain 40616 chr5 180915260 + 111154685 111155216 LTR10A 586 + 0 565 68411 231 39 68 240 0 5 21 chain 39174 chr5 180915260 + 111161777 111162347 LTR12_ 688 + 0 680 70502 139 1 0 5 0 1 101 37 40 95 0 103 126 5 9 61 chain 23411 chr5 180915260 + 111163730 111164025 AluSp 311 - 16 311 113589 35 1 0 203 1 2 55 chain 94648 chr5 180915260 + 111201772 111202832 L1PA4 6152 + 5064 6131 38176 237 0 5 220 0 2 603 chain 551884 chr5 180915260 + 111216540 111222679 L1PA3long 6157 + 6 6154 1204 477 1 0 70 1 0 486 0 1 810 0 4 540 0 4 2290 0 4 613 1 2 836 3 0 11 chain 15730 chr5 180915260 + 111223970 111224322 THE1D 372 - 34 372 139177 54 24 16 44 1 0 13 42 45 71 30 31 18 18 9 37 chain 43388 chr5 180915260 + 111249863 111250372 LTR10C 591 + 0 510 64948 139 0 1 370 chain 4748 chr5 180915260 + 111250860 111251072 LTR16A2 485 + 172 452 197946 33 95 125 20 34 72 30 chain 216891 chr5 180915260 + 111252876 111255562 L1PA7 6471 + 3778 6453 18060 427 0 1 368 1 0 4 0 1 7 0 1 132 0 1 102 3 4 230 4 0 436 30 10 89 0 1 7 1 0 22 1 0 90 0 6 113 11 14 307 0 1 301 chain 25319 chr5 180915260 + 111257405 111257763 THE1A 353 + 0 353 103125 82 10 6 20 1 0 94 1 0 131 4 5 15 chain 15314 chr5 180915260 + 111280989 111281156 L1PA4 6152 - 9 176 140444 167 chain 56020 chr5 180915260 + 111285193 111285885 L1PA7 6471 - 16 753 55111 98 4 54 373 1 0 169 5 1 42 chain 31007 chr5 180915260 + 111285885 111286274 L1PA7 6471 + 5106 5490 82369 49 10 5 330 chain 16461 chr5 180915260 + 111286274 111286513 L1PA7 6471 + 5491 5722 137037 97 6 7 29 15 6 92 chain 6339 chr5 180915260 + 111303315 111303410 SVA_F 1814 + 374 661 182472 35 0 195 15 4 1 41 chain 45944 chr5 180915260 + 111314515 111315038 L1PA5 6144 + 5621 6144 62088 523 chain 29397 chr5 180915260 + 111317590 111317908 AluYb8 318 - 1 318 87093 191 1 0 126 chain 547845 chr5 180915260 + 111321700 111327808 L1PA3long 6157 - 0 6153 1723 562 3 7 42 0 3 171 4 0 1121 4 5 162 4 25 838 0 19 1245 0 1 131 0 1 1341 1 0 479 chain 83264 chr5 180915260 + 111329889 111330914 L1PA7 6471 + 5439 6464 42224 187 1 4 263 19 15 86 0 1 469 chain 148347 chr5 180915260 + 111362063 111363771 L1PA5 6144 - 16 1727 24836 136 1 2 994 0 1 23 0 1 554 chain 11006 chr5 180915260 + 111365332 111365479 L1PA8 5853 - 5 149 156182 88 1 0 19 2 1 32 1 0 4 chain 59700 chr5 180915260 + 111366790 111367446 L1PA3long 6157 + 4360 5016 52993 656 chain 89171 chr5 180915260 + 111367447 111368436 L1PA3long 6157 + 5018 6007 39939 989 chain 12932 chr5 180915260 + 111368436 111368584 L1PA3long 6157 + 6008 6156 148496 148 chain 185240 chr5 180915260 + 111372930 111375223 L1PA7 6471 + 4160 6465 20476 26 0 13 282 0 4 89 1 0 4 0 1 405 0 1 48 0 1 77 25 6 438 0 4 62 13 25 61 1 0 752 3 0 6 chain 428345 chr5 180915260 + 111376992 111382757 HERVL-int 5654 - 153 5642 9345 19 0 2 50 1 0 5 1 6 82 1 20 59 0 2 38 18 24 134 1 21 79 322 0 276 0 2 374 0 1 301 0 25 468 0 1 466 0 1 673 0 3 324 1 0 265 6 8 161 0 2 23 39 0 91 7 0 28 0 1 213 0 2 7 1 0 126 1 0 79 0 2 203 0 1 184 1 0 637 chain 28287 chr5 180915260 + 111377495 111377802 AluYa5 310 + 1 304 91988 125 4 0 178 chain 27938 chr5 180915260 + 111391232 111391613 THE1C 375 + 0 375 93209 70 0 1 43 9 6 36 6 4 119 1 0 71 1 0 25 chain 52230 chr5 180915260 + 111391613 111392451 L1PA14 3548 + 2450 3285 57479 76 11 10 152 1 0 32 9 11 32 6 1 6 0 3 55 0 3 88 3 0 14 36 40 18 18 14 105 2 0 5 2 0 8 0 1 4 14 17 76 1 0 64 chain 4424 chr5 180915260 + 111394188 111394289 MER5A 189 + 59 166 201659 28 38 44 35 chain 70650 chr5 180915260 + 111421029 111422269 L1PB1 5432 - 10 1092 48086 8 2 0 10 1 0 6 4 7 17 8 5 15 25 22 5 2 0 30 14 1 15 1 0 44 1 0 16 2 1 53 17 11 10 1 0 8 1 0 23 11 0 12 121 0 13 0 4 98 1 4 52 1 4 119 1 0 135 1 0 44 14 11 184 0 1 94 chain 90549 chr5 180915260 + 111424302 111425342 L1PA5 6144 - 9 1049 39457 249 0 1 508 2 1 281 chain 251258 chr5 180915260 + 111467900 111470691 L1PA3long 6157 - 1 2795 16160 143 4 6 615 1 0 758 0 1 475 0 1 795 chain 25230 chr5 180915260 + 111551180 111551488 AluY 311 + 3 311 103584 94 2 1 34 0 1 178 chain 14209 chr5 180915260 + 111565120 111565403 L1PB1 5432 - 2 262 143847 4 1 0 8 1 0 15 1 0 12 1 0 21 1 0 24 2 0 14 1 0 5 3 1 21 9 1 8 2 0 16 2 1 43 21 19 47 chain 29562 chr5 180915260 + 111567200 111567513 AluYb8 318 + 0 313 86373 313 chain 41175 chr5 180915260 + 111582134 111582717 PRIMA4_LTR 623 + 0 623 67674 178 10 33 24 1 0 25 0 10 92 0 1 4 0 4 103 13 14 58 7 9 68 chain 343785 chr5 180915260 + 111632316 111637231 L1PB1 5432 - 5 5355 11787 5 2 0 15 10 7 8 1 0 22 1 0 24 2 0 15 7 4 21 24 10 15 1 0 45 1 0 17 1 0 51 16 10 11 1 0 9 1 0 24 56 20 100 0 3 187 1 0 108 1 2 65 4 5 6 0 4 274 2 0 4 13 0 102 0 19 8 0 2 378 0 444 23 0 1 348 0 34 44 0 4 66 0 1 26 1 0 339 1 0 64 0 1 146 0 1 36 0 115 153 128 0 281 4 9 20 6 16 251 1 5 58 2 1 110 0 2 256 1 5 198 5 6 80 9 8 123 1 0 47 120 119 191 0 1 117 chain 24198 chr5 180915260 + 111649010 111649301 AluSc8 310 + 4 298 109229 127 1 4 163 chain 109906 chr5 180915260 + 111695984 111697232 SVA_B 1603 + 33 1603 34237 6 0 2 424 0 39 240 0 281 118 0 1 11 1 0 448 chain 4017 chr5 180915260 + 111719635 111719743 L1MB8 1703 + 1432 1544 207112 19 49 53 40 chain 519137 chr5 180915260 + 111725777 111731953 L1PA6 6164 + 4 6162 5251 496 15 14 697 12 8 104 2 0 329 1 3 116 0 4 146 0 1 165 10 11 4 1 0 223 14 0 864 0 1 337 1 2 297 0 1 906 5 1 562 1 0 12 0 1 249 1 0 31 0 2 18 1 0 59 0 1 130 1 0 39 3 0 324 chain 16384 chr5 180915260 + 111737730 111738081 MSTA 426 + 0 426 137245 93 20 44 31 0 6 29 60 65 21 7 28 49 16 35 25 chain 253124 chr5 180915260 + 111761346 111764199 L1PA4 6152 - 0 2861 16071 6 0 5 813 0 1 716 0 1 655 1 0 5 0 1 8 0 1 649 chain 95369 chr5 180915260 + 111766511 111767767 Charlie3 2679 - 14 1292 37994 44 20 18 54 13 36 69 0 1 648 1 2 55 1 0 160 1 4 21 4 1 165 chain 454430 chr5 180915260 + 111771990 111777821 L1PA8 5853 + 50 5850 8598 22 2 0 10 1 0 6 28 20 193 30 34 60 13 14 4 1 0 183 0 4 17 0 4 384 7 8 126 1 0 209 0 1 253 21 2 159 0 1 254 13 0 617 0 1 38 1 2 193 9 5 40 1 2 153 3 7 779 5 0 214 2 3 143 15 13 634 1 0 133 1 3 467 1 5 94 1 0 46 2 0 11 0 3 54 12 10 52 2 1 19 1 0 90 chain 64472 chr5 180915260 + 111779388 111780155 LTR17 781 + 0 781 50812 116 0 4 179 10 0 28 0 1 105 3 0 283 0 22 43 chain 373534 chr5 180915260 + 111781783 111786107 HERV17-int 4347 + 12 4345 10976 15 1 0 51 2 1 34 2 0 25 2 1 85 0 2 425 1 0 674 0 4 1253 0 2 277 0 2 223 0 1 53 4 1 572 0 9 320 2 0 303 chain 61998 chr5 180915260 + 111786423 111787188 LTR17 781 + 0 773 51903 308 8 0 19 0 1 23 9 24 398 chain 531897 chr5 180915260 + 111796444 111802572 L1PA5 6144 - 3 6144 3973 110 1 0 146 1 0 13 0 1 59 1 2 523 1 0 1186 0 2 124 0 4 724 0 4 85 1 0 734 0 3 64 0 1 544 0 1 1811 chain 10635 chr5 180915260 + 111826541 111826923 MLT1C 463 + 77 463 157672 28 26 25 10 15 16 13 1 0 10 12 0 9 4 17 16 135 139 103 chain 432287 chr5 180915260 + 111839724 111845319 L1PA8 5853 + 116 5844 9253 47 2 1 4 2 0 26 0 7 68 15 16 16 20 24 244 0 10 72 1 0 31 0 3 5 6 3 26 33 34 449 4 0 8 1 5 308 0 2 126 1 0 254 0 2 176 1 2 53 0 37 239 0 3 68 0 4 249 2 3 165 8 10 23 0 4 8 4 0 261 0 1 183 1 2 4 1 0 206 0 6 83 0 1 549 0 1 364 0 4 389 0 2 125 0 1 156 0 35 78 14 15 145 1 0 48 2 0 69 1 0 9 2 1 47 0 17 7 2 1 83 chain 44941 chr5 180915260 + 111850855 111852172 L1PB1 5432 - 45 811 63127 16 2 1 24 2 0 14 8 5 19 24 12 13 324 5 41 1 0 12 10 9 49 2 0 9 47 36 19 17 0 50 2 1 5 0 1 15 199 17 210 1 0 6 0 1 176 chain 172929 chr5 180915260 + 111852193 111854177 L1PA5 6144 - 9 2008 21719 391 0 10 786 0 1 457 10 14 340 chain 35154 chr5 180915260 + 111859599 111860041 LTR2 463 + 0 463 75982 162 7 29 4 1 0 268 chain 512094 chr5 180915260 + 111860803 111867870 HERVE_a-int 7009 + 135 6997 5969 21 3 0 30 2 0 73 2 0 6 17 15 9 1 0 5 2 1 6 1 0 9 1 0 13 36 28 4 1 0 5 1 0 14 6 0 4 22 0 35 4 2 25 1 0 42 2 1 21 1 0 54 1 0 33 1 0 99 1 0 12 2 1 10 6 5 32 2 1 12 1 0 53 2 0 27 1 0 68 1 0 25 1 0 8 1 0 72 5 4 27 4 3 40 2 0 14 1 0 52 1 0 21 1 0 15 8 6 14 4 0 16 1 0 8 2 1 15 1 0 22 1 0 4 2 1 7 1 0 10 2 1 4 1 0 5 1 0 51 8 6 57 1 0 23 1 0 16 1 0 115 1 0 19 1 0 20 2 1 11 1 0 10 8 7 10 2 1 4 1 0 18 1 0 43 1 0 38 2 1 56 6 4 37 13 11 30 2 1 44 1 0 23 1 0 16 1 0 25 2 1 11 1 0 94 3 2 24 6 4 29 40 33 5 1 0 143 2 1 14 1 0 38 1 0 168 1 0 405 1 0 90 1 0 134 0 1 287 0 2 71 1 0 164 0 1 4 1 0 677 1 0 906 9 0 114 6 5 21 1 0 4 7 6 73 1 0 7 1 0 41 1 0 24 2 1 85 2 1 11 1 0 258 2 0 102 1 0 16 4 2 56 3 1 18 1 0 13 1 0 81 2 0 136 1 0 45 1 0 25 18 16 16 8 5 7 1 0 29 10 9 20 1 0 47 1 0 4 1 0 27 7 5 48 7 6 11 4 0 21 8 5 53 2 0 29 1 0 30 1 0 6 3 1 13 1 0 17 1 0 7 2 0 34 4 2 12 37 29 23 2 0 6 chain 34729 chr5 180915260 + 111867888 111868330 LTR2 463 + 0 463 76573 162 8 29 4 1 0 69 0 1 198 chain 15438 chr5 180915260 + 111868330 111868559 L1PBa1 4058 - 3819 4044 140083 66 0 1 6 1 0 109 26 22 21 chain 11578 chr5 180915260 + 111870086 111870230 MLT2A2 560 + 7 163 153991 11 1 13 132 chain 516777 chr5 180915260 + 111874365 111880800 L1PA7 6471 + 15 6468 5511 394 3 0 129 4 5 104 0 1 209 0 1 128 1 0 18 0 2 199 1 0 38 5 11 10 7 1 171 0 1 321 0 1 717 3 4 157 1 2 199 2 0 346 3 0 218 0 1 4 0 1 76 1 2 8 1 0 3 2 0 108 2 1 703 0 1 183 0 1 276 1 7 221 0 1 610 8 11 72 0 1 33 13 14 98 0 5 9 3 0 5 0 4 607 chain 350696 chr5 180915260 + 111921735 111926240 L1PA7 6471 + 0 4557 11578 35 0 1 204 0 10 195 24 14 286 14 42 58 1 0 5 10 11 480 0 1 4 1 0 79 0 1 5 1 0 110 0 1 19 1 2 418 0 1 875 14 7 25 0 4 208 0 4 730 0 1 47 0 1 146 0 25 175 1 2 145 11 1 149 0 1 29 chain 66667 chr5 180915260 + 111926240 111927061 L1PA7 6471 + 5648 6468 49717 204 8 9 138 6 0 6 0 6 448 2 0 9 chain 13279 chr5 180915260 + 111936338 111936512 L1PA16 3655 + 3403 3578 147175 68 3 4 103 chain 12127 chr5 180915260 + 111946041 111946185 MER50 708 + 563 707 151704 144 chain 6228 chr5 180915260 + 111950416 111950507 MSTB 430 + 10 100 183336 15 10 9 66 chain 27624 chr5 180915260 + 111998880 111999233 THE1A 353 + 0 353 94286 110 1 0 113 0 1 129 chain 506498 chr5 180915260 + 112009192 112015328 L1PA6 6164 - 2 6162 6433 13 3 0 326 0 1 1108 0 1 341 0 4 40 0 1 631 2 0 115 1 11 269 0 1 50 1 5 229 26 26 198 7 6 452 19 0 138 0 1 531 0 1 174 0 1 42 1 0 4 3 8 351 2 1 48 0 1 283 14 15 31 0 2 135 1 0 47 0 2 95 0 1 71 2 16 72 2 1 24 0 2 234 chain 4359 chr5 180915260 + 112018486 112018712 MLT1B 390 - 23 233 202455 48 155 134 6 0 5 17 chain 5763 chr5 180915260 + 112022825 112022896 L1MA4 2864 + 2740 2809 187504 27 2 0 42 chain 5273 chr5 180915260 + 112038905 112038970 MER33 330 + 167 238 192288 9 0 6 56 chain 12477 chr5 180915260 + 112057477 112057661 MER30 238 - 6 202 150354 94 2 0 8 7 21 73 chain 5768 chr5 180915260 + 112062733 112062811 MADE1 96 - 0 95 187453 48 1 18 29 chain 10594 chr5 180915260 + 112063699 112064201 MER30 238 + 3 238 157851 15 1 29 60 4 18 37 312 0 34 10 13 29 chain 6390 chr5 180915260 + 112104585 112104713 L1MA5A 2387 - 85 189 182102 6 1 0 65 29 1 12 1 6 14 chain 23924 chr5 180915260 + 112201302 112201588 AluSc5 308 - 15 308 110789 33 0 7 253 chain 8325 chr5 180915260 + 112239069 112239267 L1PB1 5432 + 5239 5422 169248 34 15 9 12 5 0 6 5 8 18 3 1 5 1 0 14 2 0 24 1 0 14 0 1 8 1 0 11 2 1 17 chain 5012 chr5 180915260 + 112252527 112252598 MIR 256 + 116 186 194993 18 1 0 52 chain 7548 chr5 180915260 + 112260980 112261136 MLT1B 390 + 196 326 173882 9 0 2 7 2 0 33 44 18 61 chain 24971 chr5 180915260 + 112272396 112272702 AluSp 311 + 9 311 104947 34 1 0 262 3 0 6 chain 29432 chr5 180915260 + 112273575 112273895 AluYb8 318 + 0 318 86932 132 2 0 186 chain 143296 chr5 180915260 + 112289880 112291497 SVA_D 2077 + 7 2070 25599 12 5 6 855 0 396 26 18 19 19 1 0 12 0 49 669 chain 21737 chr5 180915260 + 112329058 112329350 AluSp 311 + 9 309 121250 16 4 14 93 2 0 104 1 3 58 2 0 12 chain 40003 chr5 180915260 + 112368314 112368840 MER41A 554 + 0 536 69317 54 1 0 113 0 2 18 0 10 7 25 17 184 0 4 22 0 3 102 chain 11177 chr5 180915260 + 112408696 112408893 MER30 238 + 0 238 155529 15 14 43 49 4 0 13 4 21 50 2 0 22 0 1 24 chain 493427 chr5 180915260 + 112409446 112416498 L1PA5 6144 + 350 6132 7204 232 1 0 587 9 0 301 1271 0 239 1 0 272 0 1 144 0 3 402 0 1 726 1 3 409 3 0 55 0 1 120 1 0 636 1 4 142 1 0 487 0 1 150 0 5 861 chain 5692 chr5 180915260 + 112462420 112462492 Tigger2a 444 + 289 361 188190 72 chain 67853 chr5 180915260 + 112465340 112466181 L1PA7 6471 + 5618 6468 49305 522 1 0 180 13 14 28 1 9 79 1 2 16 chain 8551 chr5 180915260 + 112470416 112470521 MER85 139 - 30 135 168012 105 chain 9442 chr5 180915260 + 112595394 112595526 MER85 139 + 0 139 163352 96 7 14 29 chain 10965 chr5 180915260 + 112611370 112611561 MER2 342 + 132 321 156341 61 0 1 68 42 39 20 chain 28202 chr5 180915260 + 112677548 112678103 L1PB1 5432 - 2 523 92301 8 2 0 18 1 0 12 1 0 22 7 6 18 25 20 18 20 8 4 1 0 15 9 8 37 1 0 15 2 1 52 2 0 9 5 1 14 3 2 4 1 0 24 7 0 5 1 6 117 5 7 70 chain 23093 chr5 180915260 + 112698705 112698992 AluSc5 308 + 11 299 115179 128 1 2 158 chain 11410 chr5 180915260 + 112699391 112699582 MSTA-int 1630 - 8 206 154647 9 0 1 68 0 5 25 1 0 24 28 29 4 0 1 32 chain 27310 chr5 180915260 + 112701318 112701731 MSTA 426 - 0 426 95243 181 21 28 67 0 7 10 3 0 28 10 11 66 5 6 22 chain 3290 chr5 180915260 + 112723419 112723521 MIR 256 + 129 232 219168 36 49 50 17 chain 77672 chr5 180915260 + 112733276 112734427 L1PA16 3655 + 2484 3617 44669 75 12 12 92 12 11 211 10 13 22 1 0 62 0 2 216 0 1 5 2 0 5 0 3 77 12 10 74 1 4 198 45 21 19 chain 461078 chr5 180915260 + 112746313 112751888 L1PA6 6164 - 5 6164 8359 5 2 0 44 0 4 853 176 12 757 0 1 420 1 2 869 4 5 421 5 9 356 0 3 77 0 1 147 1 0 733 13 13 505 0 1 89 7 742 90 chain 39725 chr5 180915260 + 112755291 112755737 L1PA4 6152 + 5714 6152 69719 420 1 0 10 7 0 8 chain 193027 chr5 180915260 + 112777207 112779534 L1PA7 6471 - 6 2342 19767 14 1 2 339 0 8 109 0 3 88 13 3 275 0 3 816 0 2 206 0 1 114 0 1 352 chain 3621 chr5 180915260 + 112792105 112792147 Tigger4a 237 + 3 45 213332 42 chain 134778 chr5 180915260 + 112792659 112794247 LTR12C 1709 + 0 1709 27061 437 0 1 281 0 118 70 5 7 196 1 0 7 3 1 106 0 4 248 1 0 233 chain 23312 chr5 180915260 + 112794956 112795248 AluY 311 + 8 296 114140 33 4 0 255 chain 544231 chr5 180915260 + 112801882 112807996 L1PA4 6152 - 1 6140 2183 1266 0 1 526 0 4 40 1 0 1681 1 2 267 0 1 804 0 2 363 12 14 16 0 3 204 0 4 209 0 2 166 1 0 25 0 13 76 14 8 442 chain 20266 chr5 180915260 + 112855594 112855948 L1PA8 5853 - 0 347 126325 91 7 6 15 2 1 29 24 23 9 2 1 16 5 6 48 2 0 44 1 0 38 6 5 15 chain 29663 chr5 180915260 + 112881426 112881736 AluYa5 310 - 0 310 85998 310 chain 16841 chr5 180915260 + 112887252 112887454 L1PA7 6471 + 6259 6461 136013 202 chain 325227 chr5 180915260 + 112904758 112909838 L1PA11 4918 - 453 4910 12380 58 2 0 13 2 1 6 0 3 49 0 1 121 3 0 20 1 3 448 0 1 45 0 2 55 0 6 191 362 23 6 0 6 135 0 1 16 0 1 49 313 0 218 0 2 271 0 1 159 0 2 5 0 1 228 0 1 50 7 11 9 0 1 10 1 0 8 15 14 12 0 1 5 2 1 59 0 2 319 1 2 320 4 3 73 1 0 5 1 12 191 33 21 15 1 0 27 0 3 106 2 0 5 0 1 319 4 3 95 0 3 45 5 6 77 2 0 89 4 1 5 0 3 87 0 9 70 2 1 5 2 0 35 2 1 45 7 5 12 1 0 30 13 14 29 2 0 27 1 0 7 chain 9215 chr5 180915260 + 112933612 112933735 MER85 139 - 1 135 164483 24 0 7 6 1 5 92 chain 23461 chr5 180915260 + 112946434 112947030 HUERS-P3b-int 2065 + 13 514 113312 81 3 0 59 21 23 96 10 0 27 5 0 7 142 66 10 4 2 14 15 15 21 6 3 6 0 3 45 12 11 12 chain 8120 chr5 180915260 + 112953475 112953612 LTR12C 1709 + 931 1156 170380 32 15 56 49 3 50 38 chain 2916 chr5 180915260 + 112953821 112953853 LTR12C 1709 + 679 711 226766 32 chain 58037 chr5 180915260 + 112954441 112955199 LTR12 884 - 0 884 53956 399 1 0 108 2 0 39 0 1 18 28 156 163 chain 397920 chr5 180915260 + 112956127 112961089 HERV9-int 5642 - 818 5642 10173 11 0 1 6 0 6 540 1 2 1205 0 1 343 0 1 360 2 1 4 0 1 444 0 1 381 0 3 406 163 0 112 0 1 197 1 0 369 22 31 6 7 0 19 1 10 362 chain 3843 chr5 180915260 + 112959833 112959875 HERV9-int 5642 - 4535 4577 209748 42 chain 3674 chr5 180915260 + 112959917 112959956 HERV9-int 5642 - 4539 4578 212324 39 chain 54721 chr5 180915260 + 112961143 112961886 LTR12 884 - 0 884 55884 507 2 0 34 2 3 21 30 176 49 10 6 88 chain 30142 chr5 180915260 + 112982166 112982606 MLT2A1 477 - 0 477 84343 6 0 4 27 21 55 82 6 5 4 0 1 88 0 1 24 0 1 9 12 9 161 chain 415415 chr5 180915260 + 112982684 112987632 L1PA6 6164 + 1127 6162 9655 113 1 2 40 0 21 559 0 3 166 0 1 287 0 9 141 0 27 700 1 2 72 0 3 299 3 0 438 0 3 315 1 0 319 1 2 241 0 1 427 0 4 328 1 10 171 0 1 160 1 2 8 3 4 63 0 5 84 1 0 4 chain 3345 chr5 180915260 + 112989627 112989697 MER21B 843 + 2 73 218145 27 17 18 26 chain 245402 chr5 180915260 + 113002110 113005734 L1PB1 5432 + 1870 5427 16490 44 1 0 123 5 7 98 17 12 334 8 0 519 5 0 143 11 13 100 0 1 248 6 0 71 1 0 142 3 7 54 12 11 165 0 1 471 0 1 171 0 5 16 2 0 18 0 1 51 6 8 52 19 23 13 5 0 6 3 9 253 82 53 24 1 0 8 1 0 5 12 8 9 3 1 50 3 2 16 9 8 16 20 19 16 3 0 6 16 6 15 2 0 9 1 0 14 2 0 24 1 0 23 1 0 11 1 0 10 2 1 12 chain 12901 chr5 180915260 + 113046861 113047226 L1MA8 2339 - 150 484 148621 26 149 118 36 0 4 51 1 0 25 4 0 18 7 11 8 3 0 37 chain 43908 chr5 180915260 + 113047616 113048128 MER9a2 513 + 0 512 64325 267 1 0 5 0 1 239 chain 238103 chr5 180915260 + 113048732 113051793 HERVK9-int 4720 + 6 4720 16876 17 26 13 13 8 5 4 1 0 66 1 0 5 4 3 26 23 22 1316 2 926 146 0 1 82 66 804 146 1 2 69 3 5 35 7 10 255 0 4 739 chain 44221 chr5 180915260 + 113051793 113052313 MER9a2 513 + 0 513 63917 19 7 0 494 chain 3371 chr5 180915260 + 113055262 113055299 MLT1A1-int 1737 + 1687 1724 217663 37 chain 465692 chr5 180915260 + 113059715 113067078 L1PA8A 6298 - 7 6111 8200 70 4 1 71 2 1 75 0 2 63 300 0 283 0 2 232 0 3 225 0 1 401 1 0 30 1 4 168 4 16 771 0 1 173 10 6 294 0 1 34 12 12 43 0 17 25 0 1 589 16 18 78 0 1 25 0 1 10 1 0 36 1 2 39 7 0 75 0 2 264 2 0 251 987 14 41 2 6 573 11 10 89 3 0 8 0 1 246 2 0 44 3 1 27 10 6 136 0 1 160 6 5 71 1 0 3 1 0 10 1 0 15 7 14 42 0 9 12 8 0 21 2 1 42 2 0 7 5 0 16 1 0 8 19 16 11 7 4 17 chain 83291 chr5 180915260 + 113064436 113065388 MER11C 1089 - 16 967 42211 504 1 0 447 chain 19074 chr5 180915260 + 113073724 113074086 THE1B 368 - 0 368 129895 39 24 23 63 60 66 54 11 12 111 chain 114371 chr5 180915260 + 113087990 113089378 LTR12C 1709 - 0 1709 32975 481 0 4 27 9 9 67 13 329 525 0 1 266 chain 113662 chr5 180915260 + 113102703 113104248 THE1B-int 1605 + 18 1605 33184 12 3 0 206 8 14 42 6 5 135 51 76 153 6 21 226 0 3 183 6 0 283 0 3 225 chain 20854 chr5 180915260 + 113108899 113109136 L1PA4 6152 - 5 242 124442 237 chain 49848 chr5 180915260 + 113112691 113113378 MER51A 677 - 16 677 59122 77 8 0 392 20 0 13 6 8 29 6 5 59 0 1 77 chain 22549 chr5 180915260 + 113127576 113127835 AluY 311 + 36 297 117806 98 0 2 161 chain 17557 chr5 180915260 + 113131323 113131555 Tigger1 2417 - 2169 2402 134111 194 1 2 37 chain 269203 chr5 180915260 + 113154684 113157684 L1PA4 6152 + 3152 6151 15222 140 1 0 2859 chain 58940 chr5 180915260 + 113164552 113165510 L1PA15 4387 - 60 1009 53434 12 3 1 44 6 3 50 1 0 9 5 1 21 3 2 54 1 0 8 10 8 9 2 1 57 8 7 36 5 1 70 0 2 16 32 31 72 2 0 156 1 0 5 0 1 97 3 5 81 8 9 18 1 10 52 chain 108782 chr5 180915260 + 113188945 113190181 L1PA4 6152 - 9 1222 34489 1163 31 0 20 0 8 22 chain 44206 chr5 180915260 + 113190505 113191020 MER9a1 513 + 0 513 63936 13 1 0 6 2 1 493 chain 21975 chr5 180915260 + 113192239 113192494 L1PA3long 6157 + 5901 6157 120337 155 0 1 100 chain 3437 chr5 180915260 + 113215081 113215121 THE1C-int 1605 + 116 156 216455 40 chain 15393 chr5 180915260 + 113217768 113217965 THE1D-int 1627 + 0 198 140222 15 0 2 141 1 0 40 chain 5179 chr5 180915260 + 113239163 113239233 LTR80A 572 - 381 448 193242 32 3 0 35 chain 3562 chr5 180915260 + 113248176 113248215 MLT2A1 477 + 438 477 214296 39 chain 8377 chr5 180915260 + 113252859 113252995 THE1D 372 - 19 139 168986 71 23 7 42 chain 19162 chr5 180915260 + 113253053 113253327 AluSg7 307 - 15 307 129641 14 1 3 120 17 17 82 8 24 32 chain 149043 chr5 180915260 + 113259003 113260829 L1P3 4156 + 0 1823 24747 251 1 0 71 1 0 943 5 4 554 chain 99118 chr5 180915260 + 113260836 113262399 L1PA7 6471 + 5212 6468 36993 36 0 1 308 1 2 61 2 1 81 4 1 251 0 33 159 346 2 191 0 5 98 0 1 25 chain 308686 chr5 180915260 + 113264945 113268382 L1PA4 6152 - 1 3449 13058 4 0 1 791 0 3 1064 0 2 1022 1 6 555 chain 13371 chr5 180915260 + 113277545 113277706 L1PA4 6152 + 5978 6141 146812 107 0 2 54 chain 147748 chr5 180915260 + 113313166 113314791 L1PA3long 6157 - 0 1625 24915 1625 chain 95057 chr5 180915260 + 113329446 113330678 L1PA8 5853 - 0 1236 38076 93 1 0 19 2 1 39 9 8 14 5 4 66 2 0 45 1 0 40 0 3 104 0 1 8 0 17 84 16 0 20 0 2 50 0 1 21 8 9 193 0 2 392 chain 3985 chr5 180915260 + 113355572 113355618 MLT1D 503 - 12 58 207614 46 chain 524828 chr5 180915260 + 113356655 113363069 L1PA7 6471 + 7 6454 4701 514 6 7 361 1 2 42 4 8 261 1 2 333 0 1 497 1 0 518 0 1 86 0 1 574 0 4 171 0 1 106 4 0 53 0 4 16 0 4 1058 3 0 9 0 1 26 0 4 131 5 7 149 0 8 605 7 8 41 1 0 425 0 2 297 0 1 108 chain 11886 chr5 180915260 + 113363875 113364020 AluJb 308 + 160 305 152672 145 chain 17745 chr5 180915260 + 113387736 113387979 MER2 342 + 91 333 133578 22 1 0 182 8 8 30 chain 12568 chr5 180915260 + 113407514 113408349 MSTD 398 + 0 398 149974 77 13 12 13 628 193 32 1 0 71 chain 3699 chr5 180915260 + 113423802 113423843 L1MEf 1413 - 417 458 211943 41 chain 249896 chr5 180915260 + 113437140 113440215 L1PA7 6471 - 7 3110 16261 12 0 1 85 11 10 33 2 3 188 0 1 216 0 1 289 4 0 953 12 16 27 0 6 14 1 3 223 0 1 861 0 3 44 0 6 53 2 0 5 4 10 10 1 4 25 chain 126451 chr5 180915260 + 113446651 113448179 L1PA6 6164 + 4629 6160 28957 72 1 0 237 1 0 374 0 4 826 1 2 16 chain 18541 chr5 180915260 + 113461954 113462320 THE1C 375 - 11 375 131387 14 1 0 41 0 1 100 27 22 5 0 2 24 20 0 11 20 40 13 13 0 7 7 21 63 chain 111795 chr5 180915260 + 113476827 113478115 L1PA5 6144 - 2 1286 33724 6 4 0 135 3 4 112 2 0 285 1 2 740 chain 46881 chr5 180915260 + 113478115 113478651 L1PA5 6144 + 4181 4721 61094 184 0 4 352 chain 67673 chr5 180915260 + 113478651 113479526 MER11D 897 - 0 897 49375 45 1 0 4 0 1 133 0 20 10 20 0 73 2 25 168 0 2 385 5 2 29 chain 39055 chr5 180915260 + 113479526 113479986 HERVK11D-int 613 - 0 460 70658 126 0 1 198 1 0 135 chain 74084 chr5 180915260 + 113485050 113485927 MER11D 897 - 0 897 46468 287 1 24 556 4 1 29 chain 31558 chr5 180915260 + 113491961 113492456 L1PA13 3608 - 120 606 81549 22 1 0 18 2 0 5 2 0 46 3 1 10 1 0 51 1 0 62 2 0 113 1 0 32 1 0 6 21 22 22 1 4 72 chain 543509 chr5 180915260 + 113492704 113498846 L1PA4 6152 - 1 6151 2266 847 0 3 410 0 1 805 0 1 2146 0 2 17 0 1 1917 chain 2971 chr5 180915260 + 113522803 113522841 LTR68 653 + 2 40 225651 38 chain 3383 chr5 180915260 + 113528723 113528812 MER53 195 + 12 162 217411 19 14 77 18 14 12 24 chain 114219 chr5 180915260 + 113565980 113567214 L1PA2 6032 - 1 1235 33020 1234 chain 28338 chr5 180915260 + 113568622 113568916 AluYa5 310 - 16 310 91806 294 chain 4441 chr5 180915260 + 113572215 113572265 U5 65 + 0 50 201431 50 chain 13046 chr5 180915260 + 113589245 113589422 7SK 245 + 45 241 148048 109 13 32 55 chain 9515 chr5 180915260 + 113595219 113595327 L1PA4 6152 + 6044 6152 162999 108 chain 46773 chr5 180915260 + 113606424 113607146 LTR12 884 - 0 884 61394 203 3 106 36 20 0 161 2 0 11 3 93 52 1 26 23 37 0 50 15 15 15 9 11 61 7 8 13 chain 446732 chr5 180915260 + 113608577 113614683 L1PA7 6471 - 4 6452 8858 8 2 0 18 27 27 106 0 1 323 0 11 117 0 12 144 0 2 74 0 3 262 19 28 269 0 3 66 18 19 225 0 1 395 0 2 610 0 1 158 0 1 27 0 4 307 4 0 6 0 4 520 1 0 4 0 1 67 6 0 69 0 1 181 4 0 55 0 3 558 19 20 408 1 0 4 0 1 98 15 0 14 10 20 142 0 21 143 15 15 19 76 161 17 164 362 52 79 78 180 chain 116186 chr5 180915260 + 113615001 113616349 L1PA5 6144 - 1 1351 32380 76 0 1 260 0 1 1012 chain 46068 chr5 180915260 + 113622864 113623456 L1PA8 5853 + 5261 5853 61977 133 0 2 168 1 0 43 3 1 69 3 2 14 1 0 47 2 1 19 1 0 49 0 4 34 0 1 5 chain 409667 chr5 180915260 + 113626888 113631546 L1PA4 6152 - 1 6149 9812 429 1 0 1159 0 1 2045 0 20 218 3 1474 229 1 0 573 chain 43506 chr5 180915260 + 113664917 113665465 MLT2A2 560 + 1 560 64807 405 9 20 74 1 0 5 0 1 54 chain 4059 chr5 180915260 + 113681802 113682002 MSTA 426 - 164 369 206493 10 4 3 30 128 134 28 chain 14185 chr5 180915260 + 113683975 113684127 L1PA3long 6157 + 6003 6155 143937 152 chain 74244 chr5 180915260 + 113692995 113693799 L1PA2 6032 - 0 804 46391 804 chain 18749 chr5 180915260 + 113732757 113733084 L1PA15 4387 - 61 376 130828 13 2 0 39 13 11 46 1 0 10 27 22 54 1 0 27 2 1 92 chain 120877 chr5 180915260 + 113768196 113769626 LTR12C 1709 + 0 1709 30734 300 0 1 349 0 278 146 0 2 36 1 0 4 4 2 106 0 4 120 1 0 70 1 0 199 2 1 91 chain 22930 chr5 180915260 + 113789534 113789874 L1PA8 5853 - 18 352 115964 75 1 0 19 2 1 33 27 25 73 2 0 47 1 0 46 0 1 14 chain 17769 chr5 180915260 + 113811734 113811933 L1PA2 6032 - 3 207 133514 10 2 0 138 0 7 49 chain 7814 chr5 180915260 + 113811933 113812016 L1PA2 6032 + 5625 5708 172219 83 chain 285491 chr5 180915260 + 113814043 113818083 L1PA11 4918 + 470 4517 14319 11 10 6 17 0 1 194 1 0 51 2 1 124 0 5 24 2 1 36 1 0 334 0 1 65 0 1 5 1 0 8 18 1 52 2 1 8 1 4 39 0 1 107 0 3 11 18 22 21 2 0 52 31 58 80 4 3 58 3 0 185 0 1 20 0 1 12 0 14 105 9 6 33 1 0 24 0 4 33 1 8 61 1 0 63 2 1 98 0 3 181 12 4 331 0 4 97 0 5 24 0 4 34 0 4 49 0 1 141 1 2 105 2 0 5 0 2 18 0 3 3 46 0 42 1 0 59 2 0 131 9 7 39 7 20 19 1 0 131 0 1 5 0 1 130 0 2 152 0 1 26 3 4 58 2 1 10 2 0 45 2 1 25 5 3 9 1 0 21 4 0 9 chain 58900 chr5 180915260 + 113845761 113846528 MER4E 760 + 0 760 53457 23 0 1 127 22 25 77 0 1 117 2 0 161 12 2 226 chain 522915 chr5 180915260 + 113866360 113872486 L1PA5 6144 - 6 6144 4876 132 0 7 15 0 1 417 0 1 1816 1 0 84 2 0 141 9 8 236 0 1 215 0 1 756 0 1 34 0 1 1233 12 11 303 0 1 75 1 3 297 13 12 270 0 2 64 chain 43035 chr5 180915260 + 113875120 113875632 MER9a3 513 + 1 513 65373 512 chain 446049 chr5 180915260 + 113880040 113886244 L1PA8A 6298 + 36 6291 8872 4 1 0 16 1 0 11 32 21 10 3 0 21 27 11 18 1 0 5 6 5 12 1 0 7 2 1 11 2 0 15 113 115 9 8 0 10 0 4 19 0 1 45 2 0 13 3 2 9 7 5 79 1 0 104 0 3 53 0 1 20 6 8 29 31 49 26 3 0 134 0 3 155 4 18 15 0 3 30 0 2 688 18 4 216 15 11 248 10 23 143 0 1 51 0 1 543 5 6 121 0 1 30 2 1 40 5 14 62 1 0 18 6 9 16 6 10 16 0 12 20 4 0 12 0 1 88 0 3 73 3 4 42 1 2 107 0 11 39 14 17 89 9 12 470 5 6 377 0 1 221 9 0 7 0 13 27 0 1 391 5 4 280 0 1 394 0 2 123 chain 3065 chr5 180915260 + 113886304 113886336 L1PREC2 3366 + 1722 1754 223672 32 chain 44162 chr5 180915260 + 113888138 113888636 MER9a2 513 - 15 513 63998 498 chain 17162 chr5 180915260 + 113889871 113890160 THE1D 372 - 94 372 135136 39 0 6 25 19 0 10 10 31 92 20 0 13 0 1 61 chain 60596 chr5 180915260 + 113903402 113904214 L1P1 4361 + 3510 4317 52524 361 19 16 25 0 10 7 15 5 216 1 0 155 1 0 12 chain 130696 chr5 180915260 + 113908836 113910347 L1PA4 6152 + 4635 6152 27924 554 0 2 300 0 3 9 0 1 189 1 0 305 5 6 148 chain 502591 chr5 180915260 + 113933731 113940022 L1PA6 6164 + 0 6162 6690 156 12 5 78 0 2 237 0 15 18 6 8 48 1 0 334 0 4 167 3 2 23 0 1 12 10 11 87 0 1 964 0 1 171 1 2 84 5 0 631 1 42 75 5 6 239 0 4 22 1 0 251 5 0 216 7 9 204 100 0 519 1 0 23 2 0 5 7 9 117 85 0 5 2 0 605 0 3 746 chain 23128 chr5 180915260 + 113976314 113976566 L1PA3long 6157 - 5 257 115008 252 chain 112392 chr5 180915260 + 113976566 113977802 L1PA3long 6157 + 4664 5900 33563 1236 chain 81584 chr5 180915260 + 113978988 113980039 MER11C 1089 + 0 1063 42934 249 0 1 63 0 4 215 71 72 84 0 4 45 0 1 127 0 1 197 chain 12553 chr5 180915260 + 113995322 113995536 L1PA7 6471 + 6264 6466 150030 32 48 33 35 0 3 99 chain 536300 chr5 180915260 + 114006574 114012595 L1PA3long 6157 + 4 6157 3410 143 6 8 621 2 130 261 0 3 1520 1 0 3467 chain 67738 chr5 180915260 + 114017206 114018065 L1PA7 6471 + 5615 6470 49350 17 1 0 38 1 2 183 0 1 252 12 7 36 1 0 304 1 2 13 chain 3780 chr5 180915260 + 114031891 114031932 LTR12C 1709 + 677 718 210661 41 chain 19230 chr5 180915260 + 114035316 114035674 THE1B 368 - 10 368 129434 46 7 6 63 11 19 10 1 6 8 1 0 5 30 20 54 20 19 102 chain 22206 chr5 180915260 + 114035842 114036133 MER1A 529 + 232 529 119320 129 0 4 87 11 13 64 chain 137198 chr5 180915260 + 114038924 114040551 LTR12C 1709 - 0 1709 26603 404 0 2 75 0 4 107 2 0 6 1 0 116 0 41 77 0 40 729 6 4 104 chain 44296 chr5 180915260 + 114055880 114056371 L1PA3long 6157 - 0 491 63830 491 chain 42992 chr5 180915260 + 114059773 114061109 LTR19-int 1103 + 96 1058 65427 28 17 0 7 1 0 18 25 4 50 1 0 7 30 0 11 30 0 34 27 6 50 9 4 9 5 0 40 9 1 87 6 1 23 28 27 73 4 0 19 15 4 46 1 0 9 15 9 8 93 0 10 43 41 57 45 15 10 4 1 17 2 0 4 1 0 35 42 17 19 27 11 14 2 1 44 13 3 5 2 0 25 1 0 10 23 6 18 15 11 13 chain 3048 chr5 180915260 + 114078540 114078577 L2a 937 + 361 399 224022 33 0 1 4 chain 466028 chr5 180915260 + 114096384 114102514 L1PA8A 6298 - 7 6167 8185 27 0 17 61 0 1 18 2 1 71 7 0 2 0 1 8 0 7 69 1 2 34 3 1 126 1 2 127 8 10 24 0 4 63 8 0 124 4 2 145 0 5 48 1 2 30 0 2 438 1 0 142 0 3 205 0 4 264 0 1 328 0 1 401 0 2 11 0 2 56 1 0 170 0 8 45 2 0 74 2 1 129 1 5 14 0 1 337 0 1 108 3 4 39 7 12 400 0 1 183 0 2 358 3 5 364 3 0 260 0 1 48 0 1 310 6 5 22 12 10 21 0 1 23 1 0 4 1 0 10 2 1 17 7 12 58 3 0 5 6 1 19 2 1 42 15 9 13 3 2 7 1 0 6 11 9 12 29 24 8 1 0 6 1 0 12 11 13 14 chain 42614 chr5 180915260 + 114104900 114105570 L1MA2 4263 - 163 807 65880 5 3 0 25 0 1 11 7 0 92 1 0 9 2 1 89 0 4 56 22 19 122 7 6 8 1 0 48 35 20 52 0 1 75 chain 100683 chr5 180915260 + 114131876 114133033 L1PA4 6152 - 0 1179 36587 6 0 5 586 8 25 557 chain 51190 chr5 180915260 + 114135061 114135712 PABL_A 660 + 0 660 58195 56 0 4 71 3 4 88 0 1 324 0 3 109 chain 9647 chr5 180915260 + 114137168 114137348 MSTA 426 - 223 426 162364 59 28 52 21 5 6 4 1 0 40 1 0 21 chain 482338 chr5 180915260 + 114148833 114155092 L1PA6 6164 - 5 6164 7650 5 2 0 147 15 15 115 4 0 44 0 2 560 42 5 766 1 4 181 0 1 526 0 1 345 0 1 251 0 1 95 156 22 212 5 6 144 0 1 280 5 4 22 0 4 26 0 1 46 0 1 58 6 7 51 0 1 746 6 1 177 0 1 284 1 15 19 0 25 84 5 15 331 2 1 313 0 1 42 0 12 116 12 14 11 chain 9883 chr5 180915260 + 114151932 114152084 L1PA6 6164 - 3 135 160842 8 20 0 124 chain 209098 chr5 180915260 + 114176462 114179632 L1PA6 6164 + 3214 6156 18560 24 159 160 25 2 0 6 143 127 50 15 19 23 258 31 101 8 4 92 8 16 290 3 2 1779 0 8 32 7 8 145 chain 516911 chr5 180915260 + 114180121 114186241 L1PA4 6152 + 12 6140 5493 341 18 14 904 0 1 144 0 5 176 1 0 12 3 11 691 0 2 64 0 2 290 0 1 887 2 1 52 0 1 557 3 2 465 1 0 30 10 8 1363 17 15 89 chain 214433 chr5 180915260 + 114187342 114199353 L1PB1 5432 - 12 3784 18200 16 1 0 13 1 0 21 1 0 8 40 35 19 13 4 8 3 0 16 1 0 43 1 0 16 2 1 50 20 14 10 1 0 7 2 1 24 5 0 7 1 4 50 19 19 207 15 16 104 0 2 78 2 0 248 0 1 158 3 2 379 0 2 93 1 5 12 2 0 146 1 2 75 1 2 92 8765 506 237 7 8 73 1 4 40 0 1 161 0 4 56 28 63 325 0 2 282 chain 100835 chr5 180915260 + 114189378 114190658 L1PB1 5432 + 2124 3401 36532 398 5 6 308 1 0 6 4 0 171 0 1 387 chain 5951 chr5 180915260 + 114190811 114190887 L1MA4A 3247 + 3036 3111 185669 71 1 0 4 chain 75838 chr5 180915260 + 114197012 114198143 L1PB1 5432 - 12 1103 45381 14 17 15 21 1 0 24 2 0 14 1 0 5 29 25 6 3 0 11 12 11 37 1 0 16 2 1 53 17 11 10 2 1 7 1 0 24 1 0 11 9 0 473 4 0 9 2 0 292 chain 324427 chr5 180915260 + 114203453 114207948 L1PA11 4918 + 15 4517 12421 27 2 0 29 10 7 37 1 0 13 2 0 53 1 0 25 12 10 38 12 17 213 2 1 237 24 22 25 0 2 104 0 9 462 0 4 64 6 8 356 0 3 16 0 1 9 10 7 272 1 0 41 7 0 6 5 12 98 1 0 8 0 8 39 2 0 8 0 1 76 1 0 163 0 1 161 3 0 11 0 2 40 1 0 219 1 4 266 8 0 277 11 19 60 0 7 77 2 0 22 0 1 270 0 1 143 18 17 70 7 8 74 0 2 30 11 0 77 4 1 66 2 0 14 8 7 24 chain 495926 chr5 180915260 + 114211593 114218070 L1PA7 6471 + 0 6446 7074 196 2 1 44 22 12 154 2 0 5 12 0 131 0 1 356 3 4 7 0 3 7 3 0 115 16 12 286 29 30 396 12 14 36 17 13 816 0 2 106 0 1 124 9 0 114 6 5 277 5 9 276 1 2 103 3 5 6 0 1 39 0 1 21 0 2 5 2 0 182 5 6 4 1 0 70 9 11 141 0 1 43 0 1 290 0 1 520 0 1 113 5 1 17 0 1 87 0 4 389 1 0 89 1 7 10 15 0 570 3 1 148 chain 3407 chr5 180915260 + 114220493 114220535 MADE1 96 - 54 96 216962 42 chain 3190 chr5 180915260 + 114223525 114223564 L1PA16 3655 + 3486 3525 221106 39 chain 399252 chr5 180915260 + 114226953 114231495 L1PA4 6152 - 1 4554 10128 20 1 0 122 7 8 684 7 16 224 1 0 1040 5 7 89 0 1 2342 chain 9455 chr5 180915260 + 114231498 114231624 MER75B 242 + 115 242 163296 108 2 3 16 chain 51332 chr5 180915260 + 114238481 114239088 L1PA5 6144 - 14 622 58078 27 0 1 99 7 0 12 3 10 459 chain 2424 chr5 180915260 + 114242132 114242165 THE1C-int 1605 - 1422 1452 234021 13 3 0 17 chain 433169 chr5 180915260 + 114250384 114255257 L1PA3long 6157 - 0 4900 9232 16 0 1 171 0 1 157 0 14 309 0 4 1124 1 5 152 7 5 1484 0 5 1452 chain 36058 chr5 180915260 + 114255259 114255662 L1PA3long 6157 + 845 1248 74824 403 chain 85952 chr5 180915260 + 114264448 114265954 LTR12C 1709 + 84 1698 41175 52 11 25 29 114 113 70 26 28 63 4 0 6 38 0 3 30 0 50 29 28 148 0 159 207 11 74 76 44 13 234 24 1 77 1 0 6 6 6 75 1 0 71 chain 6746 chr5 180915260 + 114268539 114268622 L1PA16 3655 - 88 171 179351 83 chain 10074 chr5 180915260 + 114288466 114288686 THE1A 353 - 0 222 160200 67 0 1 56 82 83 15 chain 18250 chr5 180915260 + 114289732 114290071 THE1C 375 + 3 364 132204 104 4 5 62 67 89 38 10 9 4 0 1 35 1 0 14 chain 18085 chr5 180915260 + 114291677 114291985 THE1C 375 + 0 333 132631 59 10 11 109 0 2 6 54 76 70 chain 19887 chr5 180915260 + 114310357 114310582 L1PA2 6032 + 5800 6025 127526 225 chain 462060 chr5 180915260 + 114326186 114332265 HERV9-int 5642 + 0 5598 8327 289 1 2 173 1 0 324 20 19 59 0 1 37 85 0 203 84 0 97 0 1 30 318 7 758 0 1 468 0 1 360 0 2 133 1 0 1068 0 2 400 8 7 294 0 1 248 0 1 4 1 0 244 1 0 213 15 13 37 3 1 26 2 1 60 1 0 13 chain 778 chr5 180915260 + 114327090 114327120 HERV9-int 5642 + 989 1019 158932 30 chain 2022 chr5 180915260 + 114327380 114327458 HERV9-int 5642 + 1029 1107 158932 78 chain 24821 chr5 180915260 + 114336145 114336434 AluSp 311 + 9 296 105762 12 2 0 275 chain 31948 chr5 180915260 + 114356865 114357253 MER1A 529 - 74 462 80946 358 1 5 10 4 0 15 chain 6500 chr5 180915260 + 114371560 114371643 L1PA7 6471 + 3413 3497 181235 4 0 1 79 chain 12733 chr5 180915260 + 114371644 114371791 L1PA7 6471 + 3497 3644 149316 147 chain 31156 chr5 180915260 + 114371833 114372272 MER9a3 513 - 42 513 82241 37 0 1 126 0 10 21 1 18 66 12 13 67 5 6 84 5 7 15 chain 384829 chr5 180915260 + 114372324 114376904 HERVK9-int 4720 - 58 4660 10613 1351 1 0 11 0 1 502 0 15 825 0 3 537 0 1 4 1 0 164 6 7 854 0 6 218 6 5 25 1 0 9 1 0 64 chain 35364 chr5 180915260 + 114377494 114377975 MER9a3 513 - 0 513 75712 79 0 1 128 0 10 20 0 17 66 12 13 64 8 9 86 0 2 18 chain 157657 chr5 180915260 + 114377975 114379943 L1PA7 6471 + 3638 5622 23641 198 2 0 237 0 1 131 0 1 30 1 0 416 2 0 5 9 15 159 11 0 12 0 22 76 9 8 400 0 3 270 chain 67396 chr5 180915260 + 114379953 114380776 L1PA7 6471 + 5634 6461 49487 503 1 0 297 0 5 22 chain 125659 chr5 180915260 + 114393627 114395039 L1PA3long 6157 - 3032 4446 29172 428 1 0 583 0 3 400 chain 274980 chr5 180915260 + 114395039 114398055 L1PA3long 6157 + 3137 6157 14925 791 0 1 17 0 1 210 0 1 427 0 1 1571 chain 21127 chr5 180915260 + 114403542 114403846 LTR19B 566 - 0 316 123468 52 0 3 11 41 50 200 chain 252290 chr5 180915260 + 114409727 114412823 L1PA7 6471 + 3310 6467 16116 174 9 40 87 0 1 224 18 16 628 0 1 6 1 2 178 0 4 16 0 2 296 9 7 632 2 0 324 18 43 21 0 2 453 chain 3722 chr5 180915260 + 114432101 114432186 LTR41 747 + 41 130 211608 15 27 32 4 1 0 38 chain 31617 chr5 180915260 + 114438203 114438647 MLT2A1 477 - 0 477 81457 57 3 35 12 3 0 62 0 1 126 14 15 35 3 0 96 0 5 33 chain 17797 chr5 180915260 + 114449573 114449785 LTR17 781 + 103 325 133421 18 0 9 52 0 1 142 chain 515964 chr5 180915260 + 114453010 114459103 L1PA5 6144 + 0 6144 5577 128 14 40 116 0 5 298 0 7 217 3 20 338 9 0 263 0 2 184 0 1 628 2 0 29 0 4 908 1 0 1153 0 4 256 1 0 1204 1 0 182 2 0 7 0 1 149 chain 3093 chr5 180915260 + 114464091 114464124 Tigger3b 1229 + 642 675 223060 33 chain 30165 chr5 180915260 + 114464167 114464485 AluYb8 318 + 0 318 84285 318 chain 22081 chr5 180915260 + 114484109 114484405 AluSg7 307 - 1 307 119884 26 0 1 35 1 9 83 0 3 7 8 5 5 0 1 131 chain 251062 chr5 180915260 + 114489488 114493808 L1PB1 5432 + 1925 5427 16172 288 15 10 17 0 1 150 17 19 5 2 0 80 2 0 5 8 1 35 0 2 38 1 6 358 0 1 66 0 3 14 483 0 451 0 11 243 4 0 3 3 0 287 3 0 138 0 1 47 2 1 172 0 1 6 13 12 219 5 7 106 1 0 75 0 2 6 4 3 115 308 0 65 3 2 75 11 20 11 1 6 7 7 0 22 1 0 9 1 0 11 18 12 50 2 1 15 1 0 39 6 5 16 25 12 19 28 23 20 1 0 21 1 0 13 1 0 16 2 0 7 chain 19981 chr5 180915260 + 114558232 114558458 L1PA5 6144 + 5544 5770 127200 226 chain 31770 chr5 180915260 + 114558461 114558825 L1PA5 6144 + 5780 6144 81216 364 chain 41556 chr5 180915260 + 114584954 114585471 LTR10F 562 - 0 562 67213 283 0 34 10 6 17 218 chain 4761 chr5 180915260 + 114594793 114594849 MER5A1 166 + 98 154 197805 56 chain 6007 chr5 180915260 + 114625233 114625323 LTR54B 464 + 368 453 185179 17 1 0 6 1 0 38 3 0 24 chain 33854 chr5 180915260 + 114664347 114665591 LTR9B 643 + 5 573 77850 39 1 0 24 7 29 89 694 0 15 10 9 10 0 1 113 7 6 71 42 43 110 3 0 9 chain 22461 chr5 180915260 + 114664875 114665162 LTR70 1284 + 23 315 118195 70 0 1 181 4 8 32 chain 6493 chr5 180915260 + 114674412 114674488 MLT1A0 366 - 44 120 181313 76 chain 3574 chr5 180915260 + 114679231 114679273 LTR41B 718 - 673 715 214081 42 chain 58796 chr5 180915260 + 114693777 114694525 MER4E1 777 + 0 770 53528 25 1 0 217 0 1 8 6 5 29 3 0 48 0 19 81 0 1 108 2 8 220 chain 6113 chr5 180915260 + 114694551 114694765 MER4B 649 + 0 192 184323 31 4 0 16 1 0 9 5 6 16 0 1 21 95 76 16 chain 25534 chr5 180915260 + 114694782 114695074 LTR17 781 - 455 747 102084 292 chain 8189 chr5 180915260 + 114696938 114697040 Tigger1 2417 - 1045 1146 170017 78 1 0 23 chain 22101 chr5 180915260 + 114712371 114712644 AluYc3 301 - 14 283 119779 75 5 0 97 3 4 93 chain 7883 chr5 180915260 + 114716549 114716640 L1PA7 6471 + 6368 6459 171781 91 chain 4230 chr5 180915260 + 114729323 114729373 MER52C 1267 - 277 326 204179 12 1 0 37 chain 149340 chr5 180915260 + 114734903 114736758 L1PA7 6471 - 2 1875 24710 14 3 6 39 1 0 184 1 19 10 31 0 726 0 1 15 0 1 259 0 4 260 0 4 184 0 12 13 1 2 39 0 6 37 0 1 33 1 0 4 chain 65094 chr5 180915260 + 114740923 114741876 L1MA2 4263 - 150 1100 50529 9 1 0 48 7 0 8 4 5 77 1 0 9 2 1 150 16 13 131 2 1 6 10 0 7 0 15 48 5 1 9 1 0 55 2 3 57 1 5 196 0 5 91 chain 315090 chr5 180915260 + 114746003 114749431 L1PA2 6032 + 2604 6032 12802 1447 0 1 461 1 0 1519 chain 41154 chr5 180915260 + 114757024 114757467 L1HS 6032 - 11 454 67708 443 chain 39943 chr5 180915260 + 114757467 114757892 L1HS 6032 + 5059 5484 69402 425 chain 74525 chr5 180915260 + 114773091 114773911 L1PA3long 6157 + 5335 6156 46253 653 0 1 167 chain 516551 chr5 180915260 + 114777609 114783896 L1PA5 6144 + 0 6132 5527 128 0 14 977 5 6 44 9 0 532 1 0 350 3 5 257 8 7 9 45 0 426 0 1 124 31 14 44 0 4 216 2 0 398 101 0 119 2 0 1619 1 0 516 0 1 256 0 1 64 chain 7346 chr5 180915260 + 114781218 114781300 L1PA5 6144 + 4150 4232 172334 82 chain 81667 chr5 180915260 + 114784083 114785070 LTR5B 1012 + 0 1012 42902 130 1 15 148 0 1 591 4 6 37 0 6 69 0 2 7 chain 4354 chr5 180915260 + 114799000 114799048 L1PA3long 6157 + 6109 6157 202539 48 chain 82482 chr5 180915260 + 114814522 114815768 L1PB1 5432 - 8 1194 42547 4 1 0 16 1 0 12 0 3 19 1 0 24 2 0 14 8 5 19 32 19 8 1 0 45 1 0 15 2 1 53 2 0 9 26 20 24 54 14 282 6 7 188 8 14 254 0 2 115 chain 3941 chr5 180915260 + 114854158 114854206 Tigger3c 601 + 54 102 208261 48 chain 9137 chr5 180915260 + 114900295 114900405 MSTB 430 + 309 422 164874 18 0 3 92 chain 28275 chr5 180915260 + 114913892 114914194 AluYa5 310 - 8 310 92018 175 0 1 33 1 0 93 chain 23067 chr5 180915260 + 114939238 114939506 AluY 311 + 38 306 115316 85 1 0 9 0 1 173 chain 5860 chr5 180915260 + 114963057 114963211 MLT1C 463 + 5 140 186591 26 44 42 41 9 0 10 8 0 16 chain 14033 chr5 180915260 + 114963232 114963401 THE1B 368 + 0 169 144447 169 chain 2884 chr5 180915260 + 114982856 114982892 Tigger13a 716 - 54 90 227295 36 chain 26620 chr5 180915260 + 114986516 114986904 LTR7B 505 + 0 505 97595 105 0 10 55 19 87 33 1 0 21 1 42 88 11 10 54 chain 47043 chr5 180915260 + 114989475 114990110 HERVH-int 3825 + 3186 3825 61171 33 0 1 4 1 0 19 29 28 139 6 9 273 0 2 131 chain 27857 chr5 180915260 + 114990347 114991106 LTR7B 505 + 2 505 93502 106 0 10 53 52 31 32 2 23 54 0 41 23 307 0 32 0 1 33 14 13 51 chain 22520 chr5 180915260 + 115003385 115006152 L1MA2 4263 + 374 4056 117932 107 1 0 14 5 0 32 2290 3205 74 3 0 32 1 13 105 33 31 52 1 0 17 chain 9112 chr5 180915260 + 115006677 115006799 MER6A 605 - 137 258 165002 32 1 0 89 chain 550299 chr5 180915260 + 115010215 115016397 L1PA3long 6157 + 1 6157 1404 1189 0 3 303 0 1 906 0 7 236 39 0 51 0 1 601 1 0 647 0 1 1436 0 1 773 chain 63176 chr5 180915260 + 115026262 115026958 SVA_D 2077 + 1080 2077 51368 23 0 303 665 2 0 6 chain 5532 chr5 180915260 + 115042650 115042754 MER66B 489 - 15 117 189738 14 1 0 54 21 20 14 chain 18585 chr5 180915260 + 115046577 115046942 THE1B 368 - 0 368 131273 56 7 6 63 68 74 32 19 17 6 0 3 64 6 3 44 chain 32500 chr5 180915260 + 115060351 115060795 MLT2A1 477 - 0 477 80024 39 4 0 16 3 37 7 0 7 73 1 0 4 0 1 89 1 0 34 4 1 169 chain 456148 chr5 180915260 + 115060795 115066664 HERVL-int 5654 - 0 5654 8539 24 0 6 102 291 10 152 0 1 5 19 18 50 1 4 57 2 0 741 1 2 111 0 4 81 4 13 239 0 3 672 1 21 84 1 0 297 0 2 235 0 1 83 0 1 26 0 8 1298 15 4 155 0 8 164 0 1 100 0 5 18 1 2 112 0 3 110 0 2 25 0 2 592 chain 3219 chr5 180915260 + 115075591 115075703 MER57A-int 1588 - 995 1108 220606 21 59 60 32 chain 5565 chr5 180915260 + 115094710 115094773 LTR47A 437 + 309 372 189433 63 chain 52369 chr5 180915260 + 115154456 115155186 LTR17 781 - 53 781 57384 13 19 20 368 1 0 120 3 4 11 14 13 118 1 0 12 1 0 49 chain 228409 chr5 180915260 + 115158284 115161634 L1PA8 5853 - 25 4778 17395 68 1 0 15 9 8 47 1 0 8 1 0 74 2 0 44 1 0 378 5 4 67 8 7 24 20 22 53 2 5 256 0 1 50 0 5 72 7 1 166 2 1 118 8 7 153 4 14 8 0 2 36 309 3 48 0 4 8 0 1 43 2 1692 31 6 10 179 0 4 71 10 0 373 1 0 96 5 10 51 4 6 13 0 1 36 1 2 16 0 1 279 0 1 60 chain 502138 chr5 180915260 + 115212894 115219360 L1PA7 6471 - 10 6471 6719 113 21 6 205 0 1 363 1 2 150 2 1 387 0 3 15 0 1 1202 3 1 8 1 2 10 17 12 201 2 1 28 1 0 160 3 7 162 0 4 77 4 3 488 0 3 213 1 0 69 0 1 38 0 1 4 1 0 348 0 5 44 8 0 162 0 3 295 0 1 447 0 4 245 224 0 8 24 248 148 5 6 50 4 0 94 1 2 409 chain 27309 chr5 180915260 + 115227289 115227636 THE1-int 844 + 487 826 95249 214 5 0 71 2 0 34 1 0 20 chain 31102 chr5 180915260 + 115227685 115228448 L1MA2 4263 + 3586 4217 82338 77 1 0 77 4 5 57 41 40 50 1 5 61 9 7 59 3 0 34 11 12 14 1 3 18 1 0 5 205 75 19 4 2 11 chain 9489 chr5 180915260 + 115240719 115240847 MER85 139 + 1 139 163121 95 2 14 6 2 0 23 chain 7254 chr5 180915260 + 115264341 115264454 MER20 218 - 9 121 175741 14 1 4 28 1 0 32 3 0 34 chain 9558 chr5 180915260 + 115264551 115264719 LTR10F 562 - 344 456 162794 46 56 0 66 chain 3657 chr5 180915260 + 115264597 115264638 LTR10F 562 - 418 459 172543 41 chain 8331 chr5 180915260 + 115264719 115264806 LTR10F 562 - 344 431 169216 87 chain 11308 chr5 180915260 + 115265282 115265627 MER41A 554 - 0 365 67494 191 0 20 154 chain 44098 chr5 180915260 + 115265648 115266367 LTR10F 562 - 8 562 64089 322 1 4 18 168 0 210 chain 5769 chr5 180915260 + 115266367 115266543 MER41A 554 - 378 554 67494 176 chain 214389 chr5 180915260 + 115277446 115279954 L1PA6 6164 - 5 2515 18204 844 1 0 506 2 0 6 3 6 176 0 1 137 0 1 556 0 2 221 2 0 54 chain 19925 chr5 180915260 + 115287959 115288215 MER65A 464 + 203 464 127382 111 1 0 105 0 1 27 0 4 4 0 1 8 chain 23009 chr5 180915260 + 115294951 115295419 L1PB1 5432 + 5000 5418 115581 46 0 1 5 1 0 51 1 0 10 2 1 24 1 0 8 17 12 9 2 0 19 0 1 33 2 1 16 1 0 42 2 1 16 3 0 18 8 0 7 50 25 24 1 0 34 1 0 14 chain 9547 chr5 180915260 + 115299163 115299290 L1PA5 6144 - 7 135 162846 95 10 11 22 chain 9409 chr5 180915260 + 115299290 115299394 L1PA5 6144 + 5869 5973 163507 104 chain 3803 chr5 180915260 + 115365855 115365899 MADE1 96 - 52 96 210347 44 chain 19962 chr5 180915260 + 115376425 115376690 AluY 311 + 37 296 127265 34 1 4 51 10 0 81 1 2 87 chain 4861 chr5 180915260 + 115378869 115378946 MADE1 96 - 0 94 196666 25 1 2 10 1 17 40 chain 111013 chr5 180915260 + 115391349 115392606 L1PA5 6144 - 3 1261 33927 758 0 1 499 chain 26429 chr5 180915260 + 115392606 115392908 L1P1 4361 + 3616 3918 94198 302 chain 21556 chr5 180915260 + 115410890 115411238 THE1B 368 + 0 362 121939 111 10 12 54 51 63 122 chain 231794 chr5 180915260 + 115415600 115418421 L1P3 4156 + 0 2852 17213 236 0 14 70 1 0 56 0 6 23 8 10 244 1 3 33 13 12 142 0 1 219 1 2 453 0 1 747 0 1 150 0 1 25 0 3 182 1 2 161 0 1 34 1 0 20 chain 470709 chr5 180915260 + 115438365 115444852 L1PA7 6471 - 1 6471 8012 182 0 2 5 9 6 189 2 0 302 0 1 89 0 1 65 0 7 278 0 12 226 1 2 88 0 1 29 1 2 34 7 6 262 8 10 162 311 0 175 0 1 64 9 6 51 6 7 349 13 14 5 1 0 340 1 0 145 33 8 101 4 0 6 8 12 53 0 1 35 0 1 23 17 16 345 0 3 40 0 4 63 0 1 244 21 322 501 13 12 355 1 12 88 7 4 6 0 3 138 7 6 46 13 13 160 30 13 46 0 1 74 12 14 54 20 22 57 3 6 37 10 0 192 0 1 5 10 8 200 chain 13353 chr5 180915260 + 115452400 115452542 AluYb8 318 - 4 146 146872 142 chain 399645 chr5 180915260 + 115456684 115461517 L1PA6 6164 - 2 4779 10107 170 0 1 561 0 1 102 1 0 287 0 1 395 0 1 277 0 4 365 24 4 20 77 6 670 0 2 917 0 4 145 15 28 258 0 4 503 8 13 38 chain 183230 chr5 180915260 + 115461517 115463627 L1PA5 6144 + 4024 6138 20641 313 0 4 1797 chain 304109 chr5 180915260 + 115484543 115487969 L1PA3long 6157 - 0 3417 13239 22 7 0 209 4 0 1886 1 0 523 0 2 222 5 6 547 chain 440746 chr5 180915260 + 115502181 115507679 L1PA7 6471 + 942 6466 9035 59 0 1 4 2 1 234 2 0 108 11 9 316 3 7 25 0 2 354 0 13 381 1 0 63 0 2 120 6 2 246 0 4 95 0 1 28 7 5 80 0 4 134 0 1 252 25 4 38 1 0 14 0 4 184 0 1 91 1 0 60 1 9 57 0 1 99 0 1 500 8 9 243 0 2 13 0 1 536 0 2 5 6 4 164 0 2 75 3 0 6 3 12 678 2 3 64 0 1 90 chain 315308 chr5 180915260 + 115527629 115532179 L1PB1 5432 + 74 5419 12793 52 8 3 42 1 5 34 14 13 178 7 0 10 0 1 340 0 4 56 3 4 168 0 6 6 5 1 26 1 5 41 5 1 67 5 7 84 0 2 164 25 25 153 7 0 136 0 4 63 1 3 134 0 2 26 1 6 111 18 16 38 2 1 243 3 0 191 0 1 190 18 15 66 1 0 68 0 3 46 36 40 39 1 0 249 1 2 251 0 4 14 3 6 178 0 3 6 42 39 107 11 736 12 0 1 64 1 0 326 2 0 55 4 0 19 0 84 44 25 23 44 1 0 7 31 20 19 8 5 14 2 0 24 1 0 21 1 0 10 1 0 18 chain 114655 chr5 180915260 + 115537586 115538853 L1PA3long 6157 - 0 1269 32900 142 0 1 195 0 1 930 chain 101794 chr5 180915260 + 115538853 115539998 L1P1 4361 + 1396 2542 36273 931 0 1 214 chain 380119 chr5 180915260 + 115586991 115591220 L1PA3long 6157 - 1 4227 10750 4 1 0 254 1 0 450 5 0 1090 0 4 2424 chain 62073 chr5 180915260 + 115598921 115599687 MER4E 760 + 0 760 51866 17 0 4 508 1 0 4 23 15 62 1 0 150 chain 216161 chr5 180915260 + 115602343 115604798 L1PA5 6144 + 3681 6138 18105 560 1 0 1053 1 0 383 0 4 457 chain 3070 chr5 180915260 + 115610112 115610147 MER58A 224 - 141 176 223578 35 chain 72101 chr5 180915260 + 115667122 115667921 L1PA4 6152 - 921 1719 47435 221 1 0 577 chain 66750 chr5 180915260 + 115667921 115668678 L1PA4 6152 + 5368 6130 49712 623 9 14 125 chain 35244 chr5 180915260 + 115672286 115672682 L1PA3long 6157 - 0 393 75869 5 3 0 388 chain 268161 chr5 180915260 + 115679865 115683513 MER61-int 3695 - 6 3695 15280 84 3 0 16 1 5 157 0 1 268 0 1 5 2 1 128 1 0 18 3 1 98 0 2 38 14 13 85 1 0 153 14 0 71 0 3 26 8 7 87 0 1 135 11 13 395 0 1 252 0 5 80 2 0 135 0 1 188 0 2 76 0 5 279 0 5 66 3 0 45 0 96 74 0 1 23 7 6 125 16 2 138 13 12 64 40 1 149 1 0 16 4 0 30 chain 4845 chr5 180915260 + 115687723 115687782 Tigger2 2703 - 1817 1877 196844 4 0 1 55 chain 24820 chr5 180915260 + 115757303 115757724 MSTA 426 - 0 426 105771 61 0 5 5 1 0 98 2 3 7 1 0 11 48 42 35 11 15 12 2 0 18 0 4 6 4 5 99 chain 3180 chr5 180915260 + 115785340 115785375 MER126 217 + 87 122 221355 35 chain 2771 chr5 180915260 + 115829181 115829216 MER96B 391 - 264 298 229185 21 1 0 13 chain 14602 chr5 180915260 + 115849907 115850188 L1PA11 4918 - 340 606 142581 11 2 0 13 1 0 15 44 31 20 8 13 98 0 1 48 5 0 16 chain 40672 chr5 180915260 + 115867321 115867849 LTR10A 586 + 42 574 68334 96 0 2 62 9 10 69 1 2 291 chain 9223 chr5 180915260 + 115893995 115894108 L1PA8 5853 - 0 112 164435 93 1 0 19 chain 30254 chr5 180915260 + 115894141 115894457 AluYb8 318 - 2 318 84049 316 chain 112309 chr5 180915260 + 115924806 115926066 L1PA5 6144 + 4861 6141 33586 408 0 21 92 1 0 759 chain 31748 chr5 180915260 + 115951278 115951729 LTR7 482 - 6 482 81250 168 1 2 25 12 30 136 21 15 41 0 12 47 chain 24945 chr5 180915260 + 115953523 115953811 AluY 311 + 2 284 105078 124 6 0 158 chain 29969 chr5 180915260 + 115954007 115954325 AluYb8 318 + 0 318 84914 318 chain 12666 chr5 180915260 + 115956765 115957032 L1PB1 5432 + 5158 5404 149585 11 2 0 49 6 5 14 1 0 44 1 0 15 3 0 7 15 6 18 27 25 18 1 0 18 4 3 13 chain 43215 chr5 180915260 + 115959012 115959550 MER41A 554 - 14 554 65155 112 0 1 334 0 1 92 chain 34369 chr5 180915260 + 115972188 115972596 THE1B-int 1605 - 0 406 77109 401 2 0 5 chain 203812 chr5 180915260 + 115979594 115982840 Charlie3 2679 - 0 2660 18936 67 4 0 9 2 0 66 0 2 59 1 2 5 1 0 10 4 3 263 0 1 76 1 2 18 581 0 17 0 2 60 4 0 57 9 10 54 8 5 959 3 1 192 6 10 166 0 1 522 7 6 15 chain 17708 chr5 180915260 + 116002043 116002319 Tigger4b 360 - 9 311 133683 45 1 0 70 6 10 83 19 42 52 chain 97767 chr5 180915260 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13 0 1 4 10 15 25 1 0 153 11 1 13 chain 36965 chr5 180915260 + 116119074 116119521 L1PA5 6144 - 78 526 73560 73 5 0 6 3 8 294 0 1 66 chain 24708 chr5 180915260 + 116129740 116130028 AluY 311 + 5 296 106390 127 0 1 142 0 2 19 chain 15024 chr5 180915260 + 116139127 116139379 AluSz6 309 - 49 308 141255 14 62 69 176 chain 25746 chr5 180915260 + 116147563 116147853 L1PA4 6152 - 9 300 101099 35 0 1 255 chain 4147 chr5 180915260 + 116153783 116153826 5S 121 + 0 43 205277 43 chain 73860 chr5 180915260 + 116156834 116157794 LTR5_Hs 974 + 0 974 46585 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 35 0 1 5 1 0 62 chain 27555 chr5 180915260 + 116177899 116178209 AluYf4 310 + 0 308 94487 40 1 0 113 1 0 155 chain 25324 chr5 180915260 + 116184139 116184445 AluSp 311 - 4 307 103101 20 3 0 283 chain 11226 chr5 180915260 + 116193782 116193918 MER41A 554 - 40 180 155324 17 0 4 119 chain 34722 chr5 180915260 + 116203129 116203782 LTR7 482 - 0 482 76587 49 12 14 122 0 31 12 2 0 33 0 1 84 203 0 136 chain 2671 chr5 180915260 + 116203600 116203633 LTR7 482 - 299 332 230757 33 chain 35683 chr5 180915260 + 116281323 116281873 LTR7 482 - 0 482 75293 49 12 14 127 0 31 81 102 0 100 0 1 79 chain 4113 chr5 180915260 + 116281643 116281694 LTR7 482 - 302 353 192595 51 chain 11167 chr5 180915260 + 116282616 116282755 L1MB5 1630 + 1184 1323 155565 139 chain 25087 chr5 180915260 + 116282759 116283177 LTR7B 505 + 0 495 104367 110 0 10 55 43 20 27 1 89 7 0 1 43 1 0 26 4 5 11 0 2 35 15 14 40 chain 29723 chr5 180915260 + 116303223 116303593 THE1B 368 + 0 368 85751 158 1 0 9 6 5 196 chain 19976 chr5 180915260 + 116317038 116317373 THE1D 372 + 0 348 127220 52 17 27 21 4 5 83 9 7 42 3 9 9 1 0 52 1 0 4 1 2 27 1 0 8 chain 63784 chr5 180915260 + 116321315 116322129 L1PA7 6471 - 12 819 51105 43 0 3 38 1 2 88 1 0 7 0 2 23 0 5 54 1 7 43 6 0 298 0 1 41 19 1 151 chain 35466 chr5 180915260 + 116322454 116322903 L1PA7 6471 + 5187 5620 75600 136 22 1 214 0 1 51 0 4 26 chain 20371 chr5 180915260 + 116330421 116330724 L1PA8 5853 + 5548 5844 125993 16 2 1 45 2 0 66 21 19 45 2 1 19 1 0 84 chain 22628 chr5 180915260 + 116336405 116336666 AluSp 311 - 47 311 117433 122 0 1 88 0 2 51 chain 103849 chr5 180915260 + 116337461 116338630 SVA_D 2077 - 0 2065 35760 570 0 897 493 0 1 74 0 2 16 4 0 12 chain 6150 chr5 180915260 + 116339425 116339501 L1PB1 5432 - 329 405 183980 76 chain 36202 chr5 180915260 + 116372498 116372962 LTR2 463 - 0 463 74623 72 0 1 15 24 20 176 0 2 177 chain 276473 chr5 180915260 + 116383765 116387508 HERVH-int 3825 - 0 3825 14844 223 0 1 110 0 1 152 8 218 39 9 11 27 0 1 216 64 62 628 0 3 112 1 11 294 5 31 459 15 0 204 0 3 173 0 3 64 1 0 49 170 10 21 2 1 42 1 0 7 6 4 14 4 1 12 1 0 14 7 1 14 4 0 9 1 0 10 1 0 24 0 1 4 1 0 11 1 0 84 0 10 103 1 0 21 0 1 88 0 11 212 chain 28793 chr5 180915260 + 116387510 116387942 LTR7 482 - 0 482 89930 176 0 1 9 0 31 42 67 85 138 chain 28383 chr5 180915260 + 116421281 116421653 MLT2A1 477 - 82 477 91655 13 0 2 70 0 2 135 5 9 25 0 1 88 0 11 5 0 3 31 chain 29443 chr5 180915260 + 116428192 116428500 AluYb8 318 - 10 318 86891 308 chain 533259 chr5 180915260 + 116447494 116453619 L1PA5 6144 - 0 6141 3812 11 0 4 168 1 2 195 1 0 3105 0 1 739 0 4 227 0 1 604 0 3 173 1 0 432 3 7 465 chain 28184 chr5 180915260 + 116463743 116464055 AluYb9 318 - 9 318 92365 191 3 0 118 chain 11011 chr5 180915260 + 116504696 116504996 THE1B 368 + 0 306 156169 60 34 35 13 26 27 34 2 0 5 62 68 64 chain 26804 chr5 180915260 + 116531937 116532289 MER1A 529 - 0 354 96968 68 2 0 4 2 0 53 0 6 223 chain 18439 chr5 180915260 + 116533181 116533399 L1PA7 6471 - 1500 1718 130965 22 1 0 151 0 1 44 chain 121991 chr5 180915260 + 116533399 116534868 L1PA7 6471 + 4988 6462 30389 477 0 1 155 2 0 10 0 1 68 0 2 271 0 1 30 2 0 5 0 2 125 0 1 182 3 4 139 chain 3295 chr5 180915260 + 116566432 116566473 MADE1 96 + 46 96 219077 21 0 9 20 chain 12584 chr5 180915260 + 116570071 116570266 MER30 238 - 0 202 149905 33 9 6 68 2 0 5 4 16 74 chain 26157 chr5 180915260 + 116572191 116572524 L1PA6 6164 - 12 344 99378 52 1 2 94 4 1 120 0 1 62 chain 21203 chr5 180915260 + 116630265 116630609 L1PA13 3608 - 120 437 123202 22 1 0 18 42 22 30 2 0 5 1 0 56 1 0 62 2 0 102 chain 144517 chr5 180915260 + 116640174 116642041 LTR12C 1709 + 0 1709 25395 102 7 6 201 0 1 4 1 0 40 1 0 483 161 0 274 1 0 6 2 0 107 0 4 413 0 4 64 chain 12987 chr5 180915260 + 116641014 116641174 LTR12C 1709 + 837 997 100469 160 chain 5067 chr5 180915260 + 116644034 116644095 MER58A 224 - 113 174 194460 61 chain 29052 chr5 180915260 + 116646331 116646804 L1PB2 3958 + 3374 3838 88753 21 5 4 4 0 1 35 2 0 12 4 0 94 1 0 73 11 10 40 24 23 45 0 3 16 2 0 20 1 0 63 chain 32492 chr5 180915260 + 116669759 116670231 MER1A 529 - 15 494 80041 23 4 3 16 37 38 344 0 7 48 chain 539821 chr5 180915260 + 116673953 116679982 L1PA3long 6157 - 1 6156 2843 212 0 1 380 1 2 1868 1 0 4 0 1 2782 1 129 327 1 0 96 1 2 22 5 0 177 0 1 151 chain 29663 chr5 180915260 + 116694522 116694832 AluYa5 310 - 0 310 85997 310 chain 52176 chr5 180915260 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180915260 + 116889329 116889516 L1PA4 6152 - 209 396 134435 187 chain 18334 chr5 180915260 + 116889524 116889729 L1PA4 6152 + 5946 6151 131976 205 chain 14681 chr5 180915260 + 116918652 116918880 THE1D 372 + 102 332 142323 52 0 1 13 30 32 24 1 0 108 chain 10426 chr5 180915260 + 116919668 116919786 L1PA3long 6157 + 6039 6157 158578 118 chain 37964 chr5 180915260 + 116927872 116928322 L1PA7 6471 - 7 460 72185 186 1 3 137 0 1 126 chain 8995 chr5 180915260 + 116928332 116928438 L1PA7 6471 + 5883 5989 165628 106 chain 162831 chr5 180915260 + 116934694 116936530 SVA_D 2077 - 21 2077 22960 608 0 98 24 1 79 209 0 2 39 1 0 36 0 1 10 10 52 898 chain 10210 chr5 180915260 + 116940219 116940356 L1PA7 6471 + 6332 6466 159567 119 5 2 13 chain 15597 chr5 180915260 + 116945345 116945641 L1MA5A 2387 - 80 344 139594 11 1 0 67 28 0 12 15 17 13 1 0 32 2 0 40 8 7 39 1 0 26 chain 5918 chr5 180915260 + 116947819 116947912 L1PB1 5432 + 5332 5420 186010 17 2 0 21 1 0 21 4 3 10 1 0 16 chain 26946 chr5 180915260 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13 2 3 106 0 4 119 4 6 116 0 5 171 0 4 26 1 0 9 8 7 12 1 14 24 15 41 86 0 1 32 1 0 57 7 5 39 657 19 306 6 5 19 1 2 230 0 5 16 0 4 83 12 16 134 1 0 32 0 18 163 0 3 26 0 1 67 0 3 80 2 1 89 0 4 53 2 1 5 0 2 10 1 0 61 9 18 76 0 2 7 1 0 249 0 13 118 chain 22259 chr5 180915260 + 117155194 117155500 L1PA11 4918 + 2673 3001 119079 19 0 7 9 12 0 12 0 20 223 0 7 31 chain 46270 chr5 180915260 + 117157114 117157627 MER9a2 513 + 0 513 61796 513 chain 7132 chr5 180915260 + 117157870 117157971 L1PA13 3608 - 168 266 176530 42 2 0 7 1 0 49 chain 449595 chr5 180915260 + 117159475 117165944 L1PA8A 6298 - 7 6263 8776 118 5 7 394 0 1 103 1 2 175 5 4 418 0 4 620 1 2 461 18 21 89 0 1 5 9 11 35 0 11 323 0 1 8 4 0 31 0 1 20 6 10 23 3 1 52 9 12 17 5 14 42 1 0 29 0 1 105 229 0 16 5 6 597 0 1 161 0 2 249 9 5 139 1 2 52 0 1 28 18 4 688 0 2 32 0 2 20 0 9 153 0 3 139 3 0 45 6 24 117 0 3 83 47 46 55 1 0 3 1 0 10 3 2 13 2 0 46 0 1 16 0 4 10 8 0 11 23 22 31 69 72 5 2 0 13 1 0 6 1 0 12 1 2 8 1 0 18 27 11 19 3 0 12 32 21 11 1 0 16 1 0 5 chain 16167 chr5 180915260 + 117162626 117162829 L1PA3long 6157 + 5954 6157 137855 48 12 12 143 chain 4582 chr5 180915260 + 117168580 117168635 MLT1F2 592 + 503 559 199847 47 0 1 8 chain 167755 chr5 180915260 + 117187047 117243474 L1PA3long 6157 - 0 2869 22309 103 0 8 258 0 2 868 53569 0 498 0 1 1131 chain 106876 chr5 180915260 + 117210417 117211723 L1PA7 6471 - 2 1308 35010 10 5 0 622 9 7 128 0 2 79 1 0 133 0 6 319 chain 60528 chr5 180915260 + 117234801 117235665 L1PA11 4918 - 388 1267 52567 8 2 0 5 2 0 12 4 0 17 1 0 14 2 0 67 2 0 13 2 1 62 5 0 29 3 0 21 0 1 50 1 0 26 8 11 66 4 34 151 0 3 73 0 2 174 2 1 38 chain 108769 chr5 180915260 + 117243474 117244686 L1PA3long 6157 + 4933 6157 34410 258 0 1 118 0 4 687 0 7 149 chain 169669 chr5 180915260 + 117252063 117253980 L1P1 4361 - 20 1932 22096 12 2 1 23 1 0 37 2 1 117 1 0 167 1 0 1554 chain 78659 chr5 180915260 + 117253983 117254872 L1PA4 6152 + 5260 6151 44205 143 0 1 596 4 5 146 chain 10355 chr5 180915260 + 117260632 117260781 MLT1B 390 - 0 156 158881 27 8 15 114 chain 60200 chr5 180915260 + 117266444 117267106 L1PA2 6032 - 0 665 52728 58 0 4 552 1 0 51 chain 57071 chr5 180915260 + 117267107 117267726 L1PA2 6032 + 4744 5363 54491 619 chain 38187 chr5 180915260 + 117289270 117289804 THE1A-int 1579 + 0 537 71858 52 9 10 76 5 6 196 1 0 98 4 6 48 1 2 4 1 0 39 chain 10166 chr5 180915260 + 117289804 117289925 THE1A 353 + 229 352 158607 66 0 2 55 chain 7537 chr5 180915260 + 117291259 117291436 L1MA5A 2387 - 81 225 173939 10 1 0 58 34 6 19 3 0 26 2 0 5 6 7 13 chain 3794 chr5 180915260 + 117323606 117323650 U5 65 - 21 65 210467 44 chain 3039 chr5 180915260 + 117370081 117370119 LTR12C 1709 + 819 856 224216 18 1 0 19 chain 55563 chr5 180915260 + 117374305 117374985 L1PA7 6471 + 5777 6466 55376 194 0 1 303 7 12 26 0 1 142 0 2 8 chain 29794 chr5 180915260 + 117381777 117382087 AluYa5 310 - 0 310 85465 310 chain 3562 chr5 180915260 + 117414341 117414383 LTR1 825 + 249 291 214275 42 chain 20053 chr5 180915260 + 117443024 117443387 THE1D 372 + 0 372 126961 15 12 14 17 9 0 28 4 5 50 1 0 9 0 1 27 28 27 26 3 19 134 chain 114272 chr5 180915260 + 117445319 117446586 L1PA2 6032 - 0 1266 33005 860 1 0 406 chain 27272 chr5 180915260 + 117453941 117454233 AluYb8 318 + 26 318 95368 292 chain 179768 chr5 180915260 + 117467456 117469809 L1P2 5180 - 1491 3876 21012 52 0 1 7 7 6 490 7 9 316 5 29 243 0 3 102 0 10 93 40 10 68 0 26 74 9 2 297 0 4 543 chain 36682 chr5 180915260 + 117483946 117484383 L1PA5 6144 + 5692 6129 73982 290 5 0 8 5 10 129 chain 38209 chr5 180915260 + 117487537 117487989 L1PA5 6144 + 5686 6142 71825 63 4 0 77 0 1 162 1 8 145 chain 94544 chr5 180915260 + 117512805 117513849 L1PA2 6032 + 4996 6029 38199 9 10 0 174 1 0 850 chain 9831 chr5 180915260 + 117544212 117544342 THE1D 372 + 208 335 161445 17 1 0 30 1 0 28 1 0 52 chain 33678 chr5 180915260 + 117573814 117574192 L1PA5 6144 - 12 390 78129 378 chain 38779 chr5 180915260 + 117582202 117582655 L1PA5 6144 - 1 454 71039 453 chain 87127 chr5 180915260 + 117602187 117603165 L1PA5 6144 + 5153 6131 40726 978 chain 15724 chr5 180915260 + 117609430 117609624 L1PA7 6471 - 676 872 139198 95 0 2 99 chain 57119 chr5 180915260 + 117609624 117610295 L1PA7 6471 + 5796 6467 54456 671 chain 130501 chr5 180915260 + 117617682 117619233 SVA_C 1631 + 0 1613 27963 4 1 0 7 0 3 10 2 0 17 6 0 10 0 6 46 1 0 589 40 0 25 0 40 96 0 26 31 1 0 45 1 0 47 1 0 8 0 40 563 chain 12701 chr5 180915260 + 117638201 117638342 L1PA4 6152 + 6007 6148 149443 141 chain 23498 chr5 180915260 + 117660276 117660597 AluY 311 + 0 311 113133 125 8 0 125 2 1 24 6 5 31 chain 546461 chr5 180915260 + 117718666 117724759 L1PA3long 6157 + 2 6102 1891 1054 0 3 130 1 4 49 1 0 228 0 1 3354 0 1 1179 7 0 7 0 7 83 chain 28654 chr5 180915260 + 117724885 117725195 AluYg6 310 - 0 310 90509 310 chain 3093 chr5 180915260 + 117733957 117733990 L1PA6 6164 - 7 40 223048 33 chain 48637 chr5 180915260 + 117738550 117739095 L1PA3long 6157 - 0 542 59999 8 3 0 534 chain 35288 chr5 180915260 + 117739095 117739508 L1PA3long 6157 + 5202 5613 75807 105 1 0 173 1 0 133 chain 136900 chr5 180915260 + 117758932 117760925 L1PA10 4194 + 2258 4142 26660 40 167 54 246 11 14 14 1 0 50 0 4 58 0 1 97 6 0 292 2 1 97 35 35 353 0 1 181 0 4 134 1 3 179 3 0 26 chain 15540 chr5 180915260 + 117794093 117794291 L1PA5 6144 + 5937 6135 139766 198 chain 10648 chr5 180915260 + 117811341 117811466 L1PA4 6152 - 12 137 157612 125 chain 295540 chr5 180915260 + 117814137 117818081 L1PBa1 4058 + 101 4040 13670 327 14 13 177 13 12 25 0 1 442 33 32 160 23 8 156 2 3 99 0 1 105 1 0 145 0 7 641 0 13 98 0 14 123 0 1 727 14 13 107 2 0 50 0 4 26 0 1 5 0 3 26 1 0 6 1 0 28 2 1 43 2 0 47 0 1 58 3 1 22 17 9 13 6 4 15 2 1 4 1 0 4 3 0 21 1 0 9 12 9 6 1 0 6 1 0 8 1 0 16 1 0 42 chain 127308 chr5 180915260 + 117818649 117820202 THE1A-int 1579 - 6 1561 28742 690 0 3 427 0 1 12 0 2 34 4 0 386 chain 27094 chr5 180915260 + 117820218 117820582 THE1A 353 - 0 353 95960 113 18 7 233 chain 25604 chr5 180915260 + 117828577 117828883 AluY 311 + 0 304 101706 75 4 0 51 0 1 89 0 1 87 chain 144508 chr5 180915260 + 117830141 117831730 L1PA4 6152 + 4549 6143 25397 89 0 5 1500 chain 381838 chr5 180915260 + 117834264 117838600 L1P1 4361 - 20 4360 10707 12 2 1 23 1 0 155 1 0 740 4 0 1025 0 3 446 0 2 1212 0 2 468 0 4 247 chain 16029 chr5 180915260 + 117853834 117854115 Tigger4b 360 + 0 294 138279 25 6 0 3 10 0 88 2 35 97 30 26 20 chain 30059 chr5 180915260 + 117873703 117874082 MLT2A1 477 - 95 477 84632 176 2 0 33 0 4 26 0 1 142 chain 261574 chr5 180915260 + 117902736 117905922 HERVL-int 5654 + 2474 5654 15614 1275 3 0 330 0 1 20 7 0 135 3 0 576 0 1 379 0 1 237 0 1 151 1 4 69 chain 79907 chr5 180915260 + 117918435 117919334 L1PA5 6144 - 0 899 43634 899 chain 116968 chr5 180915260 + 117957254 117958599 L1PA4 6152 - 862 2201 32139 175 17 0 757 0 4 310 6 13 80 chain 74109 chr5 180915260 + 117958599 117959449 L1PA4 6152 + 5289 6143 46368 9 0 4 596 2 1 97 0 1 146 chain 122110 chr5 180915260 + 118038231 118039792 THE1B-int 1605 - 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6029 74078 396 chain 143091 chr5 180915260 + 118099593 118101820 L1PA10 4194 + 2113 4161 25640 203 318 0 118 5 122 48 6 8 17 0 1 15 4 5 214 11 5 87 2 0 173 4 7 92 0 7 30 1 6 443 5 4 249 1 17 133 3 0 33 1 0 11 chain 40174 chr5 180915260 + 118136443 118136903 LTR2 463 + 0 463 69073 61 0 3 399 chain 17420 chr5 180915260 + 118147502 118147717 L1PA7 6471 + 6256 6469 134459 203 2 0 10 chain 27020 chr5 180915260 + 118162821 118163198 THE1C 375 - 0 375 96216 25 1 0 152 14 16 59 6 4 4 1 0 115 chain 20915 chr5 180915260 + 118171961 118172221 AluSg7 307 - 35 297 124229 34 3 4 102 0 1 121 chain 20951 chr5 180915260 + 118174603 118174847 AluY 311 + 28 273 124100 104 0 1 140 chain 116475 chr5 180915260 + 118184322 118185725 L1PA7 6471 + 5061 6467 32287 366 0 1 192 2 0 7 0 1 688 1 0 55 0 8 82 4 0 6 chain 67362 chr5 180915260 + 118186954 118188140 MER11A 1151 - 9 997 49503 57 1 0 113 0 1 82 0 3 27 6 40 12 2 1 59 0 4 2 240 0 51 1 0 9 0 2 235 18 19 36 0 1 54 0 2 38 9 6 134 chain 40620 chr5 180915260 + 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118757847 118758092 L1PA8 5853 - 0 241 133876 93 1 0 19 2 1 47 2 1 11 1 0 69 chain 315958 chr5 180915260 + 118764139 118768047 HERV9-int 5642 - 833 5642 12765 287 0 9 91 1 13 455 9 944 173 0 2 155 9 8 351 0 9 163 0 5 9 2 0 346 0 3 399 0 1 85 9 0 190 2 0 4 1 0 43 80 0 267 2 1 80 0 4 108 5 4 75 0 19 223 2 1 282 chain 69749 chr5 180915260 + 118768068 118768971 LTR12 884 - 0 883 48493 13 11 11 168 0 6 286 0 22 40 1 2 256 49 0 79 chain 2456 chr5 180915260 + 118768846 118768873 LTR12 884 - 544 571 233627 27 chain 90679 chr5 180915260 + 118771904 118772971 MER11C 1089 + 0 1073 39396 563 6 12 498 chain 501210 chr5 180915260 + 118774874 118780891 L1PA6 6164 + 2 6162 6771 304 7 124 87 0 2 48 1 0 200 5 20 20 0 17 30 18 10 81 0 1 126 8 9 647 0 2 30 0 1 221 4 0 346 1 2 119 9 13 331 0 4 367 0 2 5 2 0 13 5 6 340 9 0 234 0 1 715 1 0 1023 1 3 211 6 2 360 6 7 76 chain 83674 chr5 180915260 + 118781878 118782929 HERVIP10FH-int 2884 + 149 1198 42044 64 3 0 127 1 0 4 0 1 55 2 0 153 0 1 16 0 1 150 0 1 476 chain 35881 chr5 180915260 + 118784525 118785003 LTR10F 562 + 0 562 75030 147 3 84 22 5 6 239 1 3 61 chain 78013 chr5 180915260 + 118786185 118787237 MER11A 1151 - 5 1151 44506 70 0 2 90 0 1 16 1 0 46 0 1 58 42 25 100 0 1 46 5 6 82 0 10 53 0 1 92 5 6 146 4 0 66 1 0 74 0 99 55 chain 24328 chr5 180915260 + 118790939 118791228 AluSc 308 + 8 296 108500 249 1 0 39 chain 25553 chr5 180915260 + 118795568 118795869 AluYk4 311 - 15 311 101967 164 5 0 132 chain 4268 chr5 180915260 + 118808518 118808764 L1MB1 2102 - 50 287 203640 9 1 0 17 178 170 41 chain 79611 chr5 180915260 + 118815993 118817050 MER11C 1089 - 16 1089 43773 11 0 1 23 0 1 117 1 0 54 0 1 127 0 1 38 1 0 4 1 5 91 37 36 113 1 0 64 1 0 69 0 4 57 0 9 247 chain 57145 chr5 180915260 + 118841718 118842378 L1PA7 6471 - 6 666 54434 660 chain 132216 chr5 180915260 + 118852617 118854155 LTR12C 1709 + 0 1709 27583 678 0 125 34 1 0 275 1 0 4 4 2 106 0 4 176 0 36 140 1 11 118 chain 49126 chr5 180915260 + 118857639 118858201 L1PA5 6144 - 6 570 59654 148 0 1 335 0 1 79 chain 32958 chr5 180915260 + 118874880 118875280 L1PA5 6144 + 5733 6135 79282 179 0 4 55 0 1 4 1 0 20 1 0 35 1 0 104 chain 47596 chr5 180915260 + 118879478 118880137 L1PA11 4918 - 414 1071 60769 16 1 0 14 2 0 20 0 6 5 0 1 48 2 1 62 1 0 266 0 2 18 1 0 113 20 15 70 chain 5059 chr5 180915260 + 118885374 118885430 MER51A 677 + 364 420 194548 56 chain 36457 chr5 180915260 + 118889783 118890259 L1PA10 4194 - 573 1069 74289 246 0 7 84 1 3 71 20 31 54 chain 4614 chr5 180915260 + 118893792 118893844 L1PBa 3878 - 2181 2233 199470 52 chain 269535 chr5 180915260 + 118894191 118897738 L1PB2 3958 + 194 3743 15205 34 4 1 310 0 3 84 13 16 186 0 3 60 0 1 360 1 0 287 0 1 35 1 0 11 5 4 95 0 1 281 0 1 349 0 1 4 1 0 153 12 17 432 1 0 353 0 1 29 2 0 54 1 0 13 5 0 24 1 0 4 5 6 10 0 4 13 8 6 10 5 0 94 4 3 35 0 4 30 1 0 45 0 1 5 1 0 11 1 0 64 chain 39357 chr5 180915260 + 118901122 118901671 MLT2A2 560 - 1 560 70241 32 7 11 10 0 1 4 1 0 88 0 11 78 7 8 136 12 11 16 5 0 153 chain 7638 chr5 180915260 + 118910225 118910411 L1PB2 3958 - 120 300 173302 16 49 48 25 2 0 48 2 0 17 13 12 14 chain 27520 chr5 180915260 + 118921741 118922114 L1PA8 5853 - 0 366 94601 112 4 3 37 0 1 4 1 0 7 2 0 10 1 0 70 2 0 45 1 0 77 chain 3813 chr5 180915260 + 118931394 118931446 MER57A-int 1588 + 250 303 210193 10 1 2 41 chain 500111 chr5 180915260 + 118935026 118941159 L1HS 6032 + 6 6032 6834 119 17 3 14 12 25 85 9 8 314 0 1 126 0 7 60 138 10 65 6 7 4 1 0 64 1 0 196 1 0 9 11 12 679 0 2 756 0 5 862 0 1 328 0 2 996 0 1 169 0 1 21 0 1 312 0 3 758 chain 32256 chr5 180915260 + 118941171 118941545 L1PA4 6152 + 5768 6143 80429 241 2 3 131 chain 3870 chr5 180915260 + 118981937 118981999 MER53 195 - 128 192 209310 30 5 7 27 chain 29315 chr5 180915260 + 118998734 118999061 L1PA3long 6157 - 15 342 87473 327 chain 10021 chr5 180915260 + 119000005 119000182 MER4A1 472 - 199 406 160480 20 39 59 80 0 10 38 chain 10947 chr5 180915260 + 119001046 119001192 MER51B 395 - 0 157 156418 82 5 17 51 1 0 7 chain 200966 chr5 180915260 + 119002553 119004779 L1PA3long 6157 - 0 2233 19147 843 0 4 223 0 1 593 0 2 567 chain 48660 chr5 180915260 + 119010316 119010875 L1PA5 6144 - 6 565 59987 559 chain 29258 chr5 180915260 + 119015154 119015464 AluYb9 318 - 9 318 87750 110 1 0 199 chain 19771 chr5 180915260 + 119020011 119020353 THE1C 375 - 1 358 127903 125 65 76 51 9 13 92 chain 561995 chr5 180915260 + 119020480 119026509 L1HS 6032 - 0 6029 294 1519 1 0 2338 0 1 2171 chain 55163 chr5 180915260 + 119039876 119040614 MER4E1 777 + 0 770 55607 51 1 0 96 15 18 164 0 19 85 0 1 107 1 9 189 5 7 24 chain 94090 chr5 180915260 + 119055236 119056316 L1PA5 6144 + 5060 6144 38325 234 22 26 824 chain 32851 chr5 180915260 + 119058584 119059034 L1PA8 5853 - 0 442 79455 92 8 6 10 6 5 39 15 14 10 1 0 69 2 0 44 1 0 153 chain 13904 chr5 180915260 + 119078202 119078422 Tigger3b 1229 - 329 557 144903 39 0 11 71 13 9 61 11 12 25 chain 31463 chr5 180915260 + 119082794 119083223 MER57F 435 - 0 423 81712 69 15 10 290 1 0 54 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MER41B 635 + 0 626 68065 123 4 6 117 0 3 70 38 16 41 17 16 59 13 9 5 0 3 88 9 11 59 chain 21898 chr5 180915260 + 119299441 119299676 L1PA2 6032 - 2 236 120627 28 1 0 206 chain 462027 chr5 180915260 + 119320863 119327973 L1PA7 6471 - 12 6455 8330 152 0 1 628 0 3 54 6 5 770 994 0 544 16 9 291 3 4 275 3 4 34 0 10 146 0 1 203 0 1 81 4 0 6 0 4 592 5 0 435 0 1 68 0 1 11 5 6 317 0 14 29 1 0 545 8 12 135 0 21 75 1 0 102 1 76 31 31 41 150 16 43 11 33 203 38 35 36 29 59 58 137 chain 4450 chr5 180915260 + 119323332 119323412 MER11C 1089 - 864 943 201347 20 15 14 45 chain 35784 chr5 180915260 + 119333401 119333806 L1PA3long 6157 - 0 407 75158 154 1 3 250 chain 18266 chr5 180915260 + 119333806 119334001 L1PA3long 6157 + 5494 5689 132165 195 chain 29527 chr5 180915260 + 119357125 119357434 AluYk12 309 - 0 309 86540 309 chain 15316 chr5 180915260 + 119357945 119358214 THE1B 368 + 34 307 140436 16 9 0 6 5 14 99 1 0 29 9 16 11 9 8 9 2 1 64 chain 31739 chr5 180915260 + 119358274 119358802 THE1B-int 1605 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255 0 1 137 17 0 124 0 1 4 1 0 19 0 3 107 2 1 574 chain 23292 chr5 180915260 + 119471219 119471513 L1PA7 6471 - 1 292 114245 11 2 0 138 1 0 142 chain 117738 chr5 180915260 + 119483080 119484441 SVA_C 1631 + 0 1631 31881 17 3 0 631 2 3 110 0 296 366 23 3 188 4 0 17 chain 545717 chr5 180915260 + 119511742 119517868 L1PA3long 6157 - 0 6156 1988 7 0 1 1769 0 11 424 0 1 635 0 1 615 1 2 654 0 1 5 4 3 878 0 6 392 1 10 741 chain 88580 chr5 180915260 + 119520093 119521730 L1MA1 4479 + 2595 4188 40155 7 5 0 65 10 9 84 27 25 19 1 0 68 1 0 8 16 17 15 62 63 11 2 0 27 7 6 122 1 2 16 2 0 9 11 7 76 1 0 12 5 0 125 7 0 30 0 4 63 0 1 27 2 0 201 1 0 25 3 0 16 1 0 15 0 3 55 8 0 17 2 0 14 1 0 5 0 10 53 1 2 4 1 0 14 1 0 5 3 0 82 85 83 17 8 9 8 1 0 6 5 2 13 6 0 16 chain 5838 chr5 180915260 + 119528115 119528189 MLT1C 463 + 353 427 186782 74 chain 12530 chr5 180915260 + 119530126 119530527 L1P3 4156 + 2439 2841 65985 194 4 5 203 chain 65416 chr5 180915260 + 119530533 119531346 LTR5_Hs 974 - 0 974 50371 50 26 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561 0 1 146 chain 18979 chr5 180915260 + 120905201 120905476 THE1B 368 + 0 353 130160 44 0 15 99 18 83 59 2 0 53 chain 8574 chr5 180915260 + 120919954 120920136 Tigger3a 397 + 54 274 167889 40 45 71 13 1 5 8 0 10 7 2 0 66 chain 24813 chr5 180915260 + 120924334 120924618 L1PA4 6152 + 5853 6139 105821 182 0 1 50 0 1 52 chain 44003 chr5 180915260 + 120933020 120933530 MER9a2 513 + 0 513 64202 128 0 1 154 0 1 20 0 1 208 chain 17926 chr5 180915260 + 120935075 120935334 L1PA16 3655 + 3125 3376 133042 10 1 0 69 1 0 26 13 9 52 2 0 85 chain 489812 chr5 180915260 + 120937725 120944289 L1PA7 6471 + 276 6470 7377 135 0 1 265 173 72 278 6 11 392 0 1 39 4 4 81 1 0 203 0 1 290 4 0 62 1 0 23 0 2 27 0 1 97 1 0 83 1 2 174 0 2 109 5 1 464 0 4 164 0 1 87 8 9 33 2 1 176 0 3 294 0 1 670 1 0 233 0 3 210 19 22 479 322 7 5 0 3 61 0 1 43 6 24 693 1 0 4 0 1 20 0 9 102 2 0 11 chain 12041 chr5 180915260 + 120938163 120938298 L1PA7 6471 + 1363 1498 151693 135 chain 6824 chr5 180915260 + 120952682 120952824 LTR12 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16 4 3 40 1 0 16 2 1 53 2 0 8 11 7 5 1 0 13 1 0 20 144 2 7 0 13 6 1 0 111 1 2 13 5 6 133 6 14 12 8 0 12 0 12 126 0 1 18 4 1 85 69 0 60 19 0 7 0 1 614 1 0 44 0 2 80 21 16 86 chain 10766 chr5 180915260 + 123431640 123431768 L1PB1 5432 + 3372 3509 156468 42 0 9 86 chain 4917 chr5 180915260 + 123440243 123440316 MER5A1 166 + 43 115 196090 18 2 1 53 chain 31361 chr5 180915260 + 123471559 123471991 MLT2A1 477 + 0 467 81885 78 0 4 80 16 13 210 4 0 6 9 47 29 chain 243745 chr5 180915260 + 123480806 123484126 L1PBa 3878 - 379 3713 16576 68 0 2 84 0 7 114 3 0 73 6 12 81 0 1 23 5 4 191 7 8 25 0 5 87 1 0 123 1 0 138 0 1 186 3 1 268 2 0 245 0 4 134 2 0 41 0 1 5 2 1 33 0 2 49 6 0 13 0 4 98 0 1 174 6 4 483 4 3 105 0 2 71 7 6 120 24 25 22 1 3 111 2 0 21 8 7 44 chain 25170 chr5 180915260 + 123491284 123491636 THE1B 368 - 12 368 103908 42 18 27 87 4 0 26 3 2 172 chain 12347 chr5 180915260 + 123505007 123505178 Tigger3a 397 - 71 253 150844 145 1 2 9 0 10 16 chain 4346 chr5 180915260 + 123535148 123535213 MER45A 178 - 54 121 202651 11 1 0 5 1 4 47 chain 27836 chr5 180915260 + 123538291 123538634 THE1D-int 1627 + 0 345 93574 10 3 2 218 0 3 112 chain 543607 chr5 180915260 + 123548864 123555003 L1PA4 6152 + 1 6152 2253 204 0 1 529 0 1 508 1 0 238 0 2 3399 10 17 1244 0 2 6 chain 25016 chr5 180915260 + 123560194 123560479 AluSp 311 - 15 300 104702 285 chain 6547 chr5 180915260 + 123575384 123575661 MLT1F1 559 + 192 525 180873 21 1 0 50 164 219 13 1 4 19 1 0 7 chain 11743 chr5 180915260 + 123586165 123586316 MSTD-int 1705 - 1320 1474 153291 51 1 4 99 chain 16876 chr5 180915260 + 123590934 123591363 L1PB1 5432 - 19 416 135901 9 1 0 12 1 0 22 1 0 24 2 0 3 7 0 11 51 36 16 15 22 21 1 0 16 5 4 47 30 23 13 1 0 13 20 18 87 chain 174112 chr5 180915260 + 123591363 123593641 L1PBa1 4058 - 668 3967 21581 96 0 1002 477 0 4 150 1 0 6 7 0 13 1 2 182 0 2 5 1 0 122 1 3 95 0 27 223 9 10 74 0 1 246 0 1 18 9 8 71 5 3 59 12 6 52 3 1 340 chain 6215 chr5 180915260 + 123595588 123595661 MER39 703 - 607 681 183446 7 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0 11 207 chain 23045 chr5 180915260 + 123771276 123771658 THE1D 372 + 16 372 115422 39 12 5 128 15 11 75 18 2 5 0 1 38 5 7 13 2 0 32 chain 16243 chr5 180915260 + 123777861 123778220 THE1B 368 - 0 368 137643 40 23 22 28 8 7 21 14 22 13 39 41 51 25 26 97 chain 6752 chr5 180915260 + 123790799 123790877 L1PA6 6164 + 6081 6159 179307 78 chain 12598 chr5 180915260 + 123819850 123820016 L1PA16 3655 - 68 232 149847 9 3 0 150 0 1 4 chain 193622 chr5 180915260 + 123820855 123823847 L1PA8 5853 - 6 3910 19727 87 1 0 19 8 7 31 3 4 6 1 0 85 2 0 44 1 0 390 12 13 75 0 2 75 1 0 230 3 0 16 0 1 42 321 0 312 34 0 9 0 34 25 1 0 282 0 4 300 0 1 242 7 1149 59 1 2 11 4 3 127 86 176 23 0 2 16 chain 27287 chr5 180915260 + 123823847 123824189 THE1A 353 - 0 341 95320 240 5 4 97 chain 124874 chr5 180915260 + 123824206 123825782 THE1A-int 1579 - 5 1579 29433 168 0 1 415 1 0 204 1 2 146 2 1 169 2 0 468 chain 28579 chr5 180915260 + 123825795 123826137 THE1A 353 - 12 353 90822 231 1 0 110 chain 292865 chr5 180915260 + 123833138 123836778 HERVH-int 3825 + 0 3824 13830 333 1 0 202 5 0 35 13 11 11 22 12 14 1 0 12 24 19 7 1 0 41 1 0 80 0 2 60 1 4 235 6 8 137 15 0 206 9 0 29 0 2 10 1 0 94 0 4 213 0 1 304 8 13 770 0 2 199 9 11 39 0 210 268 0 2 224 chain 96612 chr5 180915260 + 123857133 123858470 LTR12C 1709 + 0 1709 37665 104 2 1 151 19 25 9 4 0 64 2 1 94 1 0 21 1 0 17 5 6 11 9 10 12 8 7 71 0 1 45 0 280 95 0 1 86 1 0 5 3 1 106 11 4 168 0 102 129 1 0 82 chain 101311 chr5 180915260 + 123861193 123862312 L1PA3long 6157 + 5030 6149 36439 1119 chain 28701 chr5 180915260 + 123891569 123891875 AluYa5 310 + 0 304 90324 132 2 0 172 chain 20059 chr5 180915260 + 123902223 123902492 AluSz 310 + 21 292 126940 118 12 10 5 0 2 110 1 3 23 chain 57854 chr5 180915260 + 123944751 123945413 L1PA6 6164 + 3410 4074 54061 156 0 1 135 0 1 371 chain 128261 chr5 180915260 + 123945413 123946894 L1PA6 6164 + 4078 5563 28505 1345 0 3 14 1 0 39 9 11 73 chain 51844 chr5 180915260 + 123946895 123947493 L1PA6 6164 + 5563 6158 57725 446 1 0 6 0 1 114 4 1 27 chain 24517 chr5 180915260 + 124030267 124030554 L1PA5 6144 - 1 289 107461 153 0 1 134 chain 20916 chr5 180915260 + 124087369 124087626 AluSp 311 + 30 287 124224 10 0 1 68 1 0 178 chain 38503 chr5 180915260 + 124101949 124102394 L1PA4 6152 + 5704 6152 71432 271 0 1 168 0 2 6 chain 28026 chr5 180915260 + 124120751 124121197 MLT2A2 560 + 0 560 92910 169 65 63 69 0 2 6 0 107 42 0 5 36 1 0 6 0 3 52 chain 22254 chr5 180915260 + 124122471 124122760 AluSg7 307 - 19 307 119107 136 0 3 7 14 10 132 chain 24724 chr5 180915260 + 124143612 124143906 AluSp 311 - 17 311 106297 294 chain 223676 chr5 180915260 + 124169920 124173820 L1PB1 5432 + 2303 5408 17674 115 0 2 66 34 0 12 0 27 15 2 1 116 0 3 176 17 10 40 0 3 316 0 1 138 2 0 143 0 4 5 0 1 212 3 4 19 2 0 93 0 4 13 0 1 105 36 20 48 360 0 204 1 0 133 1 3 129 14 13 116 0 1 13 7 8 154 4 12 298 105 8 6 5 0 24 1 0 9 1 0 9 27 21 43 0 1 5 13 10 45 337 27 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 4980 chr5 180915260 + 124210695 124210756 MSTB2 466 - 382 443 195360 61 chain 33469 chr5 180915260 + 124215020 124215634 LTR1 825 - 0 639 78459 29 13 12 48 0 1 124 10 11 7 0 4 12 5 7 149 2 15 22 73 89 12 38 27 70 chain 249588 chr5 180915260 + 124250032 124253016 L1PA7 6471 + 3465 6470 16276 31 0 1 4 2 0 95 0 4 378 0 6 622 0 2 90 0 1 411 1 5 354 0 5 64 0 1 4 1 0 70 2 5 205 0 1 518 4 0 128 chain 10531 chr5 180915260 + 124273196 124273719 Tigger1 2417 + 2202 2417 158131 6 0 1 42 1 0 53 370 62 51 chain 249286 chr5 180915260 + 124299572 124308691 MER61-int 3695 + 1 3695 16294 22 12 7 7 8 0 8 1 0 136 2 1 91 1 0 86 0 4 48 15 1 11 0 1 4 1 0 109 7 6 83 0 4 8 3 99 27 1 2 56 22 0 155 0 6 35 0 3 13 1 0 172 0 1 15 0 3 162 4 0 21 3 1 119 6 8 72 0 4 7 0 5 288 0 1 190 0 3 79 0 3 194 0 1 147 2 0 80 1 0 5 1 0 46 5 6 101 1 0 26 0 1 58 5569 20 27 1 0 182 7 45 23 3 2 5 0 1 18 34 43 212 2 1 78 0 4 98 14 15 68 chain 26061 chr5 180915260 + 124302396 124302782 LTR7 482 - 18 482 99787 168 20 14 17 2 11 7 0 23 80 15 68 71 1 0 5 chain 242520 chr5 180915260 + 124304255 124307517 HERVH-int 3825 - 260 3825 16637 227 8 218 120 0 1 201 2 3 27 1 0 7 0 2 280 13 18 43 5 4 5 0 1 67 0 1 330 0 4 60 0 1 111 0 3 51 0 1 58 1 0 20 6 7 263 9 0 202 15 0 132 0 2 103 4 3 153 0 3 55 1 0 18 1 2 33 0 207 33 10 12 108 1 2 29 2 1 74 120 6 253 chain 26585 chr5 180915260 + 124307527 124307919 LTR7 482 - 7 482 97708 87 0 2 74 1 0 4 0 1 15 8 7 20 9 41 55 18 68 101 chain 7806 chr5 180915260 + 124311431 124311526 LTR12C 1709 - 960 1055 172272 95 chain 1875 chr5 180915260 + 124311546 124311602 LTR12C 1709 - 840 1055 187573 8 3 162 45 chain 8030 chr5 180915260 + 124337668 124337901 LTR37A 408 + 144 389 170872 10 1 0 9 80 83 40 23 33 70 chain 105873 chr5 180915260 + 124424226 124425606 LTR12C 1709 + 0 1709 35289 31 0 9 46 1 4 175 1 2 69 0 43 94 0 4 10 4 5 71 7 3 84 0 278 184 1 0 35 0 2 71 15 8 481 chain 24082 chr5 180915260 + 124427839 124428245 L1PA11 4918 - 354 737 109862 25 43 31 20 1 0 14 2 0 25 2 1 41 2 0 12 1 0 67 13 5 6 0 4 132 chain 3961 chr5 180915260 + 124440972 124441016 L1PA5 6144 + 6015 6059 207969 44 chain 5236 chr5 180915260 + 124462987 124463065 MADE1 96 + 0 95 192661 22 6 23 50 chain 199113 chr5 180915260 + 124497088 124500000 L1PA10 4194 + 175 3054 19274 12 2 0 9 7 4 6 2 0 10 22 16 9 1 0 4 12 11 15 3 1 14 1 0 8 92 78 8 1 0 14 4 0 8 4 0 42 2 1 4 0 1 22 14 12 402 1 0 90 0 3 52 0 1 123 2 1 136 3 4 324 15 21 124 0 2 60 3 0 159 10 12 631 6 7 10 4 0 35 1 2 40 5 7 324 chain 193907 chr5 180915260 + 124500000 124502530 L1PA8 5853 + 3312 5853 19691 123 0 7 113 27 16 299 4 0 113 1 10 54 3 5 259 0 2 185 1 0 191 5 7 98 0 1 214 0 5 358 0 5 87 0 1 99 1 0 44 2 0 70 30 25 5 0 3 29 2 1 22 8 7 83 chain 5559 chr5 180915260 + 124540806 124540914 MER33 330 + 60 174 189489 32 13 14 38 6 11 19 chain 107622 chr5 180915260 + 124542254 124543552 L1PA7 6471 + 5169 6467 34822 430 0 4 18 1 0 508 4 5 83 0 1 4 1 0 75 1 0 4 0 1 13 1 0 144 3 0 8 chain 14323 chr5 180915260 + 124601488 124601801 AluYk4 311 - 2 172 143486 154 12 0 5 131 0 11 chain 5352 chr5 180915260 + 124631101 124631180 MADE1 96 + 1 96 191514 32 5 21 42 chain 141997 chr5 180915260 + 124640844 124642475 L1PA5 6144 - 5 1630 25823 327 2 1 609 0 1 427 6 0 260 chain 13713 chr5 180915260 + 124662535 124662709 MER30 238 + 0 200 145564 113 0 26 61 chain 31520 chr5 180915260 + 124669710 124670197 MLT2A1 477 - 0 477 81612 37 72 58 45 1 5 133 0 1 28 4 1 150 0 2 17 chain 11906 chr5 180915260 + 124673534 124673737 L1PA8 5853 - 0 199 152572 92 9 8 12 2 1 40 23 21 25 chain 12693 chr5 180915260 + 124674105 124674474 L1MA6 2487 - 93 404 149473 17 3 0 9 0 6 23 175 114 142 chain 554659 chr5 180915260 + 124694693 124700725 L1PA2 6032 - 0 6029 866 900 1 0 3764 1 6 651 7 0 708 chain 27577 chr5 180915260 + 124717358 124717670 AluY 311 + 0 308 94411 83 1 0 46 3 0 179 chain 57506 chr5 180915260 + 124728152 124728788 L1PA4 6152 - 1 637 54235 636 chain 30285 chr5 180915260 + 124754617 124754932 AluYb8 318 + 0 315 83974 315 chain 62687 chr5 180915260 + 124766032 124766732 L1PA4 6152 - 1 709 51598 138 0 7 171 0 1 391 chain 22864 chr5 180915260 + 124791642 124792494 L1PA8A 6298 - 15 870 38623 86 16 6 7 0 4 267 0 2 413 0 7 63 chain 25554 chr5 180915260 + 124792499 124792825 THE1A 353 + 0 324 101959 108 2 0 216 chain 117390 chr5 180915260 + 124792850 124794403 THE1A-int 1579 + 8 1579 32000 63 23 10 89 1 0 5 0 1 22 10 16 86 6 0 3 0 5 110 0 11 273 1 0 111 6 7 302 2 1 263 0 11 97 0 5 80 chain 9768 chr5 180915260 + 124794748 124795112 L1PA8A 6298 - 870 1242 38623 55 0 1 64 0 6 16 0 1 229 chain 61373 chr5 180915260 + 124823495 124824227 L1PA5 6144 + 5400 6138 52163 213 0 1 342 1 0 4 0 1 6 13 19 105 1 0 47 chain 27964 chr5 180915260 + 124842479 124842849 L1PA8 5853 - 0 364 93127 92 2 1 17 1 0 55 1 0 9 1 0 30 1 2 39 2 0 46 1 0 73 chain 23630 chr5 180915260 + 124843045 124843388 THE1B 368 - 0 368 112414 125 35 45 144 0 15 39 chain 192814 chr5 180915260 + 124868171 124870592 L1PA8 5853 + 3443 5853 19785 164 0 1 234 12 1 290 1 0 572 0 1 13 6 6 280 0 1 4 2 0 171 0 4 379 1 0 26 0 1 17 2 0 57 0 1 13 1 0 9 13 11 45 0 1 15 2 1 92 chain 375921 chr5 180915260 + 124903674 124908365 L1PA4 6152 + 10 6151 10885 5 0 1 464 0 1759 180 0 1 155 8 10 680 0 2 686 1 0 403 0 4 807 329 6 131 0 4 730 0 1 112 chain 15828 chr5 180915260 + 124907089 124907258 L1HS 6032 + 5858 6027 138855 169 chain 2840 chr5 180915260 + 124936230 124936262 LTR16A 446 + 313 345 228078 32 chain 3085 chr5 180915260 + 124941473 124941508 MLT2B3 573 + 54 89 223232 35 chain 106443 chr5 180915260 + 124952809 124953969 L1PA2 6032 - 1089 2252 35139 803 0 3 357 chain 97193 chr5 180915260 + 124953969 124955055 L1PA2 6032 + 4949 6032 37462 1063 1 0 6 2 0 14 chain 21826 chr5 180915260 + 124958923 124959180 AluY 311 + 41 299 120914 91 0 1 166 chain 49523 chr5 180915260 + 124959919 124960483 L1PA5 6144 - 2171 2737 59311 261 1 0 203 0 3 99 chain 188451 chr5 180915260 + 124960483 124962630 L1PA5 6144 + 3991 6139 20198 272 0 2 15 0 2 587 1 0 944 2 0 326 chain 141567 chr5 180915260 + 124966442 124968033 L1P1 4361 - 36 1625 25890 20 1 0 155 1 0 1414 chain 33517 chr5 180915260 + 124968033 124968402 L1PA3long 6157 + 5788 6157 78379 369 chain 3841 chr5 180915260 + 125005544 125005717 Charlie4a 502 - 47 220 209776 31 2 1 20 101 102 19 chain 6123 chr5 180915260 + 125007479 125007564 MLT1A1 405 - 30 117 184246 54 6 8 25 chain 21960 chr5 180915260 + 125008996 125009378 THE1D 372 - 0 372 120389 148 1 0 24 33 34 32 2 0 34 30 31 22 10 1 46 chain 8968 chr5 180915260 + 125010256 125010427 Tigger4a 237 - 10 183 165783 36 18 0 8 22 42 87 chain 101086 chr5 180915260 + 125011542 125012635 L1PA2 6032 + 4936 6032 36489 944 0 3 149 chain 28409 chr5 180915260 + 125015851 125016258 MLT2A1 477 - 93 477 91546 33 27 0 26 1 0 148 5 9 29 0 1 138 chain 119607 chr5 180915260 + 125026953 125028497 THE1B-int 1605 + 0 1605 31178 322 0 2 102 0 25 43 9 10 28 0 3 399 1 0 48 10 11 345 1 0 28 0 1 10 1 31 197 chain 265541 chr5 180915260 + 125066853 125070705 L1PA10 4194 + 335 4161 15413 19 62 43 6 2 0 76 6 5 274 1 0 31 0 1 11 10 9 69 10 1 336 22 17 270 0 7 112 0 2 27 0 3 106 1 0 246 1 0 24 0 1 99 40 40 13 0 1 4 2 1 20 16 20 101 21 19 93 0 1 106 0 1 4 1 0 74 6 7 46 6 4 183 36 36 59 3 0 11 16 16 149 3 1 53 2 0 90 1 6 325 0 1 83 1 0 7 7 8 217 1 5 145 1 0 37 3 0 33 1 0 11 chain 292377 chr5 180915260 + 125072748 125076246 L1PA5 6144 - 2202 5690 13871 421 6 0 355 0 2 6 6 5 831 6 8 541 16 3 270 0 1 52 0 5 273 9 0 247 5 9 196 0 4 225 0 1 33 chain 188138 chr5 180915260 + 125076249 125078452 L1PA5 6144 + 3926 6135 20224 709 1 0 25 0 5 600 0 1 46 7 8 651 1 2 5 1 0 157 chain 29170 chr5 180915260 + 125078462 125078977 L1PB1 5432 + 4915 5404 88194 183 18 21 19 8 6 14 5 1 9 2 0 51 1 0 18 1 0 43 1 0 16 2 0 8 16 7 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 23845 chr5 180915260 + 125096266 125096601 THE1B 368 + 0 348 111215 39 2 17 116 1 0 8 0 3 7 10 7 97 1 0 54 chain 14991 chr5 180915260 + 125152986 125153350 MSTB 430 + 0 377 141349 73 21 22 30 18 22 10 3 1 29 67 74 32 2 1 8 1 6 49 2 1 19 chain 320502 chr5 180915260 + 125176903 125181267 L1PA7 6471 + 816 6465 12575 65 7 9 40 6 7 342 313 0 81 2 3 79 14 16 14 9 0 117 0 5 165 2 1 69 0 3 467 0 1 197 5 1593 484 2 0 5 4 6 88 0 4 272 1 0 25 5 6 641 15 14 661 30 32 137 chain 78939 chr5 180915260 + 125185016 125185993 L1PA8 5853 - 1669 2669 44089 173 0 6 317 1 16 352 4 6 130 chain 120926 chr5 180915260 + 125185993 125187602 L1PA8 5853 + 4193 5847 30720 80 1 2 59 2 0 28 1 2 554 2 1 78 37 37 59 0 1 26 0 1 385 0 33 23 1 0 45 3 1 68 5 4 10 1 0 46 8 24 87 chain 98821 chr5 180915260 + 125190140 125191262 L1PA4 6152 - 1138 2260 37067 138 1 0 940 0 1 43 chain 99045 chr5 180915260 + 125191272 125192382 L1PA4 6152 + 5031 6141 37017 1110 chain 30833 chr5 180915260 + 125194369 125194731 L1PA7 6471 - 254 617 82804 85 0 1 277 chain 14756 chr5 180915260 + 125202158 125202377 MER30 238 + 0 238 142081 95 18 31 27 3 9 76 chain 93846 chr5 180915260 + 125207739 125208778 L1PA4 6152 - 9 1051 38400 151 0 3 888 chain 14443 chr5 180915260 + 125244673 125244893 MER30 238 - 0 238 143071 43 3 0 37 1 6 25 4 0 6 3 23 98 chain 552445 chr5 180915260 + 125254108 125260255 L1PA3long 6157 - 0 6157 1139 4 0 1 1075 1 0 1814 0 4 569 1 0 307 0 2 955 0 1 233 0 3 1175 0 1 13 chain 41418 chr5 180915260 + 125276012 125276487 MER9a1 513 + 0 471 67396 43 1 0 135 3 0 293 chain 8535 chr5 180915260 + 125277830 125277931 MSTA-int 1630 + 1520 1622 168109 19 0 1 82 chain 29238 chr5 180915260 + 125329085 125329397 AluYa5 310 - 0 310 87863 217 2 0 93 chain 164864 chr5 180915260 + 125332042 125334806 L1PA8 5853 + 3705 5853 22668 42 0 1 35 0 1 4 0 1 235 314 0 80 3 4 95 7 11 97 25 23 354 308 0 37 0 2 113 0 1 161 4 7 25 0 1 52 1 0 477 1 0 44 2 0 70 2 1 9 1 0 52 2 1 9 0 1 9 1 0 93 chain 30484 chr5 180915260 + 125334845 125335214 L1PA8 5853 + 5195 5564 83463 318 0 1 8 1 0 42 chain 10476 chr5 180915260 + 125335215 125335362 L1PA8 5853 + 5564 5725 158358 46 2 0 72 9 25 18 chain 8283 chr5 180915260 + 125335379 125335480 L1PA8 5853 + 5741 5841 169498 19 1 0 81 chain 33031 chr5 180915260 + 125341353 125341744 L1P1 4361 - 20 408 79167 12 2 1 23 1 0 155 1 0 197 chain 16719 chr5 180915260 + 125341744 125341963 MER61-int 3695 + 1303 1528 136345 105 0 1 64 1 6 49 chain 2864 chr5 180915260 + 125345163 125345197 HSMAR1 1287 + 1253 1287 227638 34 chain 206817 chr5 180915260 + 125364318 125367293 L1PA13 3608 + 86 3050 18731 4 1 0 19 6 4 23 2 0 3 1 0 20 31 23 18 27 18 73 2 0 24 1 0 78 18 20 15 1 0 17 2 0 16 6 2 18 1 0 19 3 1 14 2 0 19 6 5 86 2 5 416 0 1 61 1 0 268 1 2 16 1 0 111 8 12 57 10 12 89 0 2 265 4 0 19 0 4 176 7 9 514 10 18 112 1 2 119 2 0 5 1 5 43 0 1 33 0 1 47 chain 13819 chr5 180915260 + 125367324 125367631 L1PB1 5432 + 5106 5381 145183 8 1 0 24 1 0 9 20 15 5 2 0 53 2 1 16 1 0 44 1 0 7 34 20 19 8 5 14 2 0 24 1 0 11 chain 48823 chr5 180915260 + 125394137 125394793 LTR12 884 + 0 872 59859 25 1 0 30 0 107 178 1 2 36 2 0 170 0 103 16 1 0 76 5 13 7 0 1 108 chain 28635 chr5 180915260 + 125399994 125400301 AluYa5 310 - 3 310 90580 307 chain 79792 chr5 180915260 + 125406810 125407794 L1PA7 6471 - 847 1839 43688 27 2 0 177 1 0 4 0 1 52 17 7 157 0 4 209 0 3 22 0 5 282 0 8 34 chain 17957 chr5 180915260 + 125407804 125408456 L1PA7 6471 + 5659 5997 51781 123 317 0 111 0 2 18 0 1 83 chain 28937 chr5 180915260 + 125407939 125408244 AluYg6 310 + 0 305 89283 305 chain 88456 chr5 180915260 + 125408472 125409596 MER11A 1151 + 0 1150 40205 108 0 2 66 8 0 23 2 0 29 1 0 66 5 1 31 0 2 142 4 4 199 6 9 137 18 52 279 chain 12752 chr5 180915260 + 125409601 125410064 L1PA7 6471 + 6011 6470 51781 296 11 10 146 3 0 7 chain 466755 chr5 180915260 + 125422191 125427794 L1PA6 6164 + 0 6162 8160 84 5 516 187 0 17 119 0 1 99 1 0 126 0 2 312 0 4 284 2 1 579 1 3 308 0 4 170 0 1 372 11 8 504 0 4 10 0 8 407 1 3 599 1 0 393 0 1 180 5 10 516 3 5 174 1 2 10 4 3 10 0 1 125 chain 4853 chr5 180915260 + 125428386 125428443 Tigger3c 601 + 468 525 196752 57 chain 120456 chr5 180915260 + 125448070 125449647 THE1A-int 1579 + 0 1579 30886 302 2 0 5 0 1 410 23 21 271 4 5 65 5 10 278 22 21 4 0 1 144 1 0 41 chain 11178 chr5 180915260 + 125449649 125449843 THE1A 353 + 2 186 154665 32 9 8 39 16 8 17 8 7 73 chain 15124 chr5 180915260 + 125449843 125450054 THE1A-int 1579 - 1370 1578 140984 38 2 0 54 10 9 107 chain 12142 chr5 180915260 + 125450055 125450194 THE1A 353 - 0 139 151643 139 chain 40149 chr5 180915260 + 125463068 125463841 L1PB1 5432 - 8 724 69107 6 1 0 14 1 0 13 1 0 21 1 0 23 3 1 14 1 0 5 3 1 14 21 8 8 3 0 8 8 7 45 18 16 51 2 0 10 5 1 14 8 6 18 26 3 11 2 3 265 46 47 83 chain 20851 chr5 180915260 + 125479007 125479298 THE1D 372 - 2 372 124457 126 0 87 87 24 16 54 chain 549444 chr5 180915260 + 125485496 125491639 L1PA4 6152 - 1 6152 1525 355 0 1 1443 0 4 347 0 3 305 2 0 1115 1 4 573 1 0 2001 chain 371868 chr5 180915260 + 125508620 125513677 L1PA8 5853 + 689 5853 11028 133 2 0 78 0 1 190 12 14 34 1 0 137 3 1 269 0 8 277 0 3 15 7 3 53 0 2 20 0 1 55 1 0 9 13 14 11 15 15 242 0 4 76 0 1 128 0 3 114 0 4 115 8 21 34 0 1 195 0 2 34 0 45 314 0 1 4 1 0 22 10 14 132 2 0 5 0 2 81 2 3 14 0 1 200 4 5 99 1 2 153 0 1 119 5 8 70 0 3 37 0 2 14 20 19 50 0 1 424 0 5 36 0 3 29 1 0 8 12 14 59 10 7 57 8 12 21 6 9 129 0 3 321 1 0 44 2 0 70 2 1 13 2 1 47 2 1 19 1 0 93 chain 15919 chr5 180915260 + 125532613 125532789 L1PA7 6471 - 22 198 138609 176 chain 357924 chr5 180915260 + 125538654 125543861 L1PB1 5432 + 421 5422 11402 104 1 4 104 2 0 79 23 24 28 10 12 221 1 4 117 7 5 106 0 2 174 11 19 283 3 0 5 17 23 97 177 0 116 10 9 10 0 3 188 0 1 22 1 11 267 0 2 37 1 2 87 48 5 226 0 2 6 0 8 8 35 1 269 1 2 101 0 3 307 4 13 42 1 0 152 1 0 61 0 1 193 8 15 307 0 1 59 0 5 44 0 1 109 0 2 5 0 2 9 0 1 81 10 7 379 0 2 87 1 0 11 3 0 24 2 0 8 1 0 12 5 1 10 5 3 5 1 0 10 1 11 22 2 1 15 1 0 45 2 1 14 27 15 16 2 0 5 4 3 11 2 0 6 0 2 11 1 0 5 2 1 20 1 0 13 1 0 18 chain 11786 chr5 180915260 + 125540060 125540208 L1PA5 6144 + 5992 6138 153106 91 2 0 55 chain 87365 chr5 180915260 + 125550207 125551179 L1PA4 6152 + 5180 6152 40629 972 chain 4168 chr5 180915260 + 125556379 125556440 L1PA14 3548 + 2939 2998 204993 13 3 1 45 chain 14126 chr5 180915260 + 125556951 125557402 LTR12D 1347 + 591 1177 144123 42 41 0 73 48 0 46 158 382 43 chain 2443 chr5 180915260 + 125557118 125557152 LTR12D 1347 + 718 751 233793 17 1 0 16 chain 374540 chr5 180915260 + 125557570 125562100 HERV9-int 5642 + 0 5642 10937 635 1 0 160 1 0 312 4 0 670 0 1133 872 2 0 817 0 1 279 6 5 231 1 24 90 1 0 218 16 14 36 3 1 26 2 1 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 85966 chr5 180915260 + 125564622 125565912 LTR12D 1347 + 0 1347 41166 264 140 69 203 6 37 125 19 12 312 27 0 27 1 0 34 1 0 45 0 133 86 chain 27399 chr5 180915260 + 125565918 125566373 L1PA14 3548 + 2998 3447 94975 7 2 0 52 0 7 25 0 1 24 4 0 17 2 0 6 1 0 5 1 5 74 1 0 108 21 18 32 4 2 12 1 0 5 1 0 16 1 0 33 chain 151338 chr5 180915260 + 125582195 125583981 L1P1 4361 - 240 2041 24422 188 0 1 249 0 1 172 0 1 339 4 5 72 0 4 100 0 2 23 0 2 268 0 3 371 chain 16498 chr5 180915260 + 125584029 125584227 L1PA6 6164 + 5960 6162 136927 189 0 4 9 chain 35489 chr5 180915260 + 125590618 125591058 LTR43 600 + 0 440 75569 440 chain 18086 chr5 180915260 + 125608864 125609072 L1PA5 6144 - 19 226 132626 153 1 0 54 chain 15383 chr5 180915260 + 125609072 125609240 L1PA5 6144 + 5709 5877 139403 168 chain 83120 chr5 180915260 + 125611587 125612617 L1PA7 6471 - 18 1067 42283 27 1 0 128 4 2 165 1 0 135 1 6 33 1 0 140 0 3 108 0 3 76 0 9 149 0 4 61 chain 6092 chr5 180915260 + 125626009 125626161 L1MB7 1623 + 486 641 184475 56 36 41 25 11 10 12 1 0 11 chain 393376 chr5 180915260 + 125627611 125632314 L1PA4 6152 + 1425 6152 10344 15 1 0 299 2 1 580 3 2 211 7 10 31 1 4 374 0 2 223 9 0 78 1 6 71 0 1 849 0 2 102 0 2 61 1 5 146 0 4 770 0 1 26 7 9 30 0 4 62 0 3 743 chain 68827 chr5 180915260 + 125639123 125640036 L1PA10 4194 + 3231 4161 48885 212 1 4 300 2 1 8 0 2 65 0 28 88 15 1 166 0 1 4 1 0 5 3 0 27 0 3 4 1 0 11 chain 180957 chr5 180915260 + 125714620 125717084 L1PB1 5432 - 10 2450 20905 18 1 0 10 1 0 24 1 0 24 47 33 13 2 0 4 1 0 15 1 0 45 1 0 15 2 1 19 0 1 32 2 0 9 2 0 3 2 0 12 1 0 10 2 1 19 3 0 9 6 7 170 0 1 4 1 0 117 2 1 179 3 0 427 0 1 123 0 1 81 0 7 19 6 5 230 5 7 380 0 1 336 0 1 25 chain 10333 chr5 180915260 + 125728448 125728584 MER1B 344 - 96 228 158968 28 4 0 104 chain 5588 chr5 180915260 + 125731707 125731846 L1MA9 1812 - 276 398 189185 10 1 0 35 1 0 6 2 0 9 36 23 7 0 1 24 1 0 7 chain 10975 chr5 180915260 + 125741931 125742058 L1PA4 6152 + 6025 6152 156290 127 chain 176331 chr5 180915260 + 125744394 125746323 L1PA3long 6157 - 11 1942 21322 446 0 2 1483 chain 8362 chr5 180915260 + 125758202 125758313 MER30 238 + 132 238 169067 6 2 0 53 3 0 47 chain 11195 chr5 180915260 + 125762823 125762953 L1PA6 6164 - 17 147 155439 130 chain 8320 chr5 180915260 + 125780968 125781156 L1PA11 4918 - 340 511 169282 11 2 0 13 1 0 13 33 24 9 1 0 6 4 1 13 1 0 7 6 6 68 chain 20224 chr5 180915260 + 125841140 125841415 AluYb8 318 - 0 307 126456 191 42 74 42 chain 41620 chr5 180915260 + 125853793 125854374 MER4D1 891 + 121 765 67132 49 22 24 43 0 28 13 0 3 129 1 0 16 4 3 164 0 32 140 chain 139697 chr5 180915260 + 125864273 125865794 L1PA3long 6157 + 4636 6157 26188 1521 chain 6246 chr5 180915260 + 125869367 125869438 MER34A1 583 + 9 80 183201 71 chain 5127 chr5 180915260 + 125889034 125889093 U6 107 - 47 106 193809 59 chain 39337 chr5 180915260 + 125902600 125903110 LTR10C 591 + 0 591 70270 106 0 72 77 0 2 243 8 10 13 6 11 57 chain 24241 chr5 180915260 + 125916518 125916803 AluSp 311 - 14 299 108986 285 chain 2617 chr5 180915260 + 125925832 125925911 SVA_F 1814 + 374 413 231479 21 41 1 17 chain 46917 chr5 180915260 + 125935487 125936064 LTR10C 591 + 5 591 61293 137 0 2 237 0 1 71 1 0 57 0 1 4 0 1 30 0 5 40 chain 5389 chr5 180915260 + 125947772 125947858 MER96B 391 + 65 152 191096 36 9 10 41 chain 39873 chr5 180915260 + 125984324 125984815 HERVH-int 3825 + 3338 3825 69502 223 15 10 44 0 1 209 chain 32255 chr5 180915260 + 126002793 126003506 LTR7B 505 - 44 504 80433 209 0 21 30 305 0 77 9 40 83 chain 5349 chr5 180915260 + 126003111 126003171 LTR7B 505 - 193 253 191552 60 chain 2676 chr5 180915260 + 126003171 126003202 LTR7B 505 - 274 305 230462 31 chain 3520 chr5 180915260 + 126003236 126003273 LTR7B 505 - 216 253 215060 37 chain 2485 chr5 180915260 + 126003273 126003302 LTR7B 505 - 274 303 233262 29 chain 85315 chr5 180915260 + 126006082 126007021 L1PA3long 6157 + 5207 6146 41411 939 chain 98960 chr5 180915260 + 126007128 126008763 HERVH-int 3825 - 0 1687 37037 376 39 39 150 18 17 57 0 367 234 0 1 142 3 0 5 4 7 140 1 0 5 317 4 74 2 1 68 chain 30684 chr5 180915260 + 126008769 126009172 LTR7 482 + 0 482 83064 69 8 46 109 0 1 25 0 30 34 0 10 158 chain 4722 chr5 180915260 + 126010680 126010758 LTR7 482 - 26 105 198257 23 13 14 42 chain 23842 chr5 180915260 + 126018318 126018612 AluY 311 + 0 311 111233 53 1 17 62 0 1 178 chain 9488 chr5 180915260 + 126037315 126037427 AluSc 308 + 17 129 163123 112 chain 22935 chr5 180915260 + 126047687 126047970 AluY 311 + 15 300 115926 4 0 1 112 0 1 167 chain 21752 chr5 180915260 + 126056503 126056782 AluSp 311 - 22 299 121198 50 13 12 99 1 0 116 chain 2774 chr5 180915260 + 126065780 126065821 MER5A 189 + 87 129 229103 25 1 2 15 chain 10163 chr5 180915260 + 126075769 126075894 L1PB4 2604 - 345 470 159783 125 chain 24608 chr5 180915260 + 126087052 126087362 AluSc5 308 + 0 307 106950 47 1 0 244 2 0 16 chain 34753 chr5 180915260 + 126088303 126088686 L1PA3long 6157 + 5772 6157 76540 378 0 2 5 chain 19298 chr5 180915260 + 126096148 126096399 AluSg7 307 - 17 269 129248 152 7 8 92 chain 25136 chr5 180915260 + 126108635 126108923 AluSp 311 - 22 310 104088 288 chain 27307 chr5 180915260 + 126128259 126128566 AluSp 311 - 3 310 95254 307 chain 26526 chr5 180915260 + 126134712 126135003 AluYf4 310 - 13 310 97951 243 1 7 47 chain 22554 chr5 180915260 + 126170292 126170561 AluY 311 + 0 276 117791 47 5 11 74 0 1 143 chain 38272 chr5 180915260 + 126175028 126175470 LTR7 482 - 0 482 71747 202 0 30 34 1 11 205 chain 324646 chr5 180915260 + 126176728 126180944 HERVH-int 3825 - 0 3825 12411 365 0 2 690 1 0 320 2 0 732 4 31 462 19 0 302 0 3 139 0 1 48 2 1 9 150 0 63 67 0 26 195 0 13 1 14 24 1 0 10 1 0 38 5 0 188 6 0 121 0 11 212 chain 2372 chr5 180915260 + 126179854 126179973 HERVH-int 3825 - 3115 3146 233002 17 88 0 14 chain 6150 chr5 180915260 + 126180140 126180299 HERVH-int 3825 - 3102 3193 183987 24 2 1 42 67 0 24 chain 40304 chr5 180915260 + 126180946 126181397 LTR7 482 - 0 482 68872 187 0 31 264 chain 5013 chr5 180915260 + 126189933 126190010 LTR12C 1709 - 877 995 194991 59 6 47 12 chain 541611 chr5 180915260 + 126225982 126232025 L1PA3long 6157 - 0 6157 2573 4 0 1 1720 0 1 2351 0 3 378 22 0 629 1 0 24 1 0 140 10 138 439 0 3 172 0 1 82 0 1 70 chain 539189 chr5 180915260 + 126239506 126245509 L1PA3long 6157 - 1 6138 2953 4 1 0 15 1 0 2560 1 0 1126 2 0 1547 0 128 34 0 1 542 0 9 37 0 1 133 chain 81669 chr5 180915260 + 126246170 126247184 MER11B 1079 + 8 1079 42901 132 1 66 53 3 0 47 0 1 276 13 12 177 6 0 277 5 6 24 chain 27389 chr5 180915260 + 126265388 126265754 THE1B 368 + 0 368 95003 169 1 0 27 19 24 11 1 0 9 1 0 128 chain 6418 chr5 180915260 + 126277927 126278029 MER58B 340 - 0 104 181883 59 16 18 27 chain 23750 chr5 180915260 + 126279508 126279801 AluSg7 307 - 16 307 111776 12 1 0 36 1 0 111 1 0 49 0 1 82 chain 25974 chr5 180915260 + 126306863 126307169 AluY 311 + 4 311 100121 128 0 1 178 chain 29274 chr5 180915260 + 126309571 126309888 AluYb8 318 - 1 318 87674 199 1 0 31 0 1 86 chain 136680 chr5 180915260 + 126325669 126327246 L1PA6 6164 + 4585 6161 26696 105 3 2 1136 1 0 4 0 1 169 2 1 5 0 1 152 chain 44310 chr5 180915260 + 126330339 126330884 MLT2A2 560 - 0 555 63813 6 1 0 224 12 23 302 chain 44249 chr5 180915260 + 126352020 126352532 L1PA6 6164 + 5219 5739 63882 99 0 4 115 0 1 250 0 3 48 chain 36898 chr5 180915260 + 126352548 126352962 L1PA6 6164 + 5747 6162 73662 275 0 1 139 chain 5840 chr5 180915260 + 126356159 126356250 MLT1A0 366 + 45 148 186771 44 12 24 35 chain 119610 chr5 180915260 + 126389133 126390836 L1PA6 6164 - 5 1406 31175 496 304 2 903 chain 20254 chr5 180915260 + 126390837 126391063 L1PA6 6164 + 4542 4768 126364 226 chain 27749 chr5 180915260 + 126392005 126392371 THE1B 368 - 0 368 93871 200 1 0 123 1 6 26 2 0 13 chain 550869 chr5 180915260 + 126438795 126444944 L1PA3long 6157 - 0 6156 1336 149 0 1 2863 0 1 445 0 1 1526 1 4 629 2 6 7 4 0 130 0 1 393 chain 172820 chr5 180915260 + 126459595 126461504 L1PA4 6152 + 4239 6151 21731 1627 0 3 282 chain 9999 chr5 180915260 + 126469575 126469703 BC200 147 - 19 147 160582 86 1 0 33 0 1 8 chain 41487 chr5 180915260 + 126481289 126481749 L1PA4 6152 + 5331 5791 67296 460 chain 32982 chr5 180915260 + 126481749 126482108 L1PA4 6152 + 5792 6151 79245 359 chain 32179 chr5 180915260 + 126482124 126482508 L1PA5 6144 + 5761 6142 80563 215 8 9 150 4 0 7 chain 17701 chr5 180915260 + 126487591 126488034 MSTB2 466 - 0 466 133702 41 0 7 32 36 48 15 86 88 30 20 21 47 27 28 109 chain 326512 chr5 180915260 + 126489723 126494959 L1PA11 4918 - 401 4891 12324 9 4 0 20 1 0 16 2 0 64 3 1 12 1 0 58 9 6 415 0 1 5 0 4 180 0 155 290 329 0 45 7 9 456 0 1 62 1 0 161 2 0 14 5 1 145 10 14 255 560 0 31 1 4 36 1 0 42 3 5 82 4 5 90 11 8 251 5 6 9 0 2 615 0 1 48 0 1 251 0 1 408 13 7 6 0 3 28 1 0 48 2 0 17 15 14 13 12 9 35 2 0 15 chain 29528 chr5 180915260 + 126495589 126495900 AluYb8 318 + 0 311 86531 311 chain 12786 chr5 180915260 + 126500657 126500871 Tigger3a 397 - 73 343 149112 91 11 8 67 24 83 21 chain 223926 chr5 180915260 + 126509097 126512384 L1PBa 3878 - 101 3076 17659 5 1 0 11 19 13 11 2 0 20 1 0 353 6 14 130 3 0 71 0 4 35 0 3 57 0 2 5 3 4 5 2 0 34 17 10 223 318 0 60 0 3 316 0 10 8 0 1 453 1 0 233 1 0 20 28 21 17 0 1 10 2 0 98 5 6 238 9 10 132 4 5 45 0 2 91 6 7 178 chain 7424 chr5 180915260 + 126517905 126517986 LTR12 884 - 612 693 174622 81 chain 50269 chr5 180915260 + 126518296 126519041 LTR12 884 + 0 884 58810 90 0 132 156 2 0 166 99 104 25 3 7 204 chain 518542 chr5 180915260 + 126532838 126538982 L1PA6 6164 + 0 6162 5326 194 1 2 4 1 0 209 4 3 9 7 8 31 6 5 352 17 0 435 2 20 38 0 2 122 0 5 12 0 1 873 0 1 863 0 1 180 0 1 1319 3 2 519 1 2 98 0 5 232 0 1 89 18 22 13 0 1 482 4 0 6 chain 92737 chr5 180915260 + 126548945 126550612 L1PA16 3655 - 67 1416 38735 10 3 0 14 36 37 237 2 0 14 1 2 71 1 0 87 11 6 111 303 0 15 0 2 12 18 15 37 1 0 14 18 19 95 5 6 27 4 0 31 1 0 52 1 0 435 chain 127490 chr5 180915260 + 126555631 126557443 L1PA14 3548 + 1703 3446 28693 90 14 6 236 50 9 61 0 8 82 3 4 338 1 0 121 4 3 22 3 0 112 1 0 98 1 2 43 3 1 14 2 0 47 13 9 105 4 0 17 2 0 6 1 0 17 0 1 64 1 0 87 0 1 25 16 11 36 4 2 12 1 0 5 1 0 17 1 0 31 chain 15889 chr5 180915260 + 126560810 126561004 L1PA6 6164 + 5967 6161 138685 194 chain 141683 chr5 180915260 + 126580627 126582306 L1PA7 6471 + 4789 6470 25870 166 1 0 240 1 0 419 0 3 512 9 10 331 chain 5079 chr5 180915260 + 126593243 126593303 MER4D0 881 - 0 60 194307 60 chain 3621 chr5 180915260 + 126593310 126593352 MER4D0 881 - 26 68 213330 42 chain 318334 chr5 180915260 + 126600613 126604204 L1PA5 6144 - 2 3596 12655 337 3 1 2598 0 3 291 0 2 362 chain 189482 chr5 180915260 + 126604204 126606355 L1PA5 6144 + 403 2560 20098 839 2 1 391 0 6 100 0 1 819 chain 102451 chr5 180915260 + 126606920 126608694 L1PA11 4918 - 414 1799 36147 9 3 0 6 0 2 15 2 0 64 3 1 12 1 0 70 1 0 108 374 3 181 10 7 119 0 1 98 6 0 43 9 18 87 1 0 499 21 0 9 0 10 23 chain 33971 chr5 180915260 + 126644180 126644561 L1PA4 6152 + 5766 6152 77656 375 0 5 6 chain 28765 chr5 180915260 + 126653220 126653574 L1PA6 6164 + 5783 6136 90044 220 15 14 119 chain 2271 chr5 180915260 + 126653576 126653602 L1PA6 6164 + 6136 6162 235761 26 chain 55816 chr5 180915260 + 126681778 126682467 L1PB1 5432 - 329 1017 55238 13 0 4 113 1 2 345 6 0 211 chain 7490 chr5 180915260 + 126686492 126686647 L1MA3 4352 - 2 148 174204 19 3 0 3 1 0 13 9 8 19 1 0 6 1 0 24 6 4 50 chain 2743 chr5 180915260 + 126709278 126709320 L1MC3 1789 - 656 697 229564 27 1 0 14 chain 25831 chr5 180915260 + 126733583 126733923 L1PA8 5853 + 5520 5853 100742 44 1 0 45 2 0 69 6 5 5 1 0 52 2 1 19 2 1 92 chain 28842 chr5 180915260 + 126800235 126800704 L1PA13 3608 - 120 579 89708 22 1 0 18 2 0 4 2 0 41 15 12 22 1 0 12 6 7 14 1 0 63 2 0 27 7 6 5 0 2 60 0 1 40 1 0 103 chain 22379 chr5 180915260 + 126804068 126804339 AluSz 310 + 16 287 118588 271 chain 14972 chr5 180915260 + 126813055 126813213 L1PA2 6032 - 448 606 141404 158 chain 39142 chr5 180915260 + 126813213 126813645 L1PA2 6032 + 5599 6031 70550 432 chain 6858 chr5 180915260 + 126818844 126818960 MSTD 398 - 266 398 178514 18 23 39 75 chain 5200 chr5 180915260 + 126829778 126829835 L1PA3long 6157 + 6100 6157 193025 57 chain 19211 chr5 180915260 + 126840402 126840767 THE1B 368 + 0 368 129497 108 122 117 7 0 8 128 chain 350873 chr5 180915260 + 126876604 126880718 L1P1 4361 - 256 4360 11571 272 1 0 630 1 0 237 1 3 996 0 2 652 20 11 8 0 9 34 12 11 9 0 1 22 13 16 5 3 0 429 4 0 66 8 1 114 4 3 573 chain 67381 chr5 180915260 + 126880729 126881471 L1PA3long 6157 + 5397 6147 49495 426 0 1 188 0 7 128 chain 10811 chr5 180915260 + 126903014 126903171 MER83B 357 + 152 308 156937 99 14 13 44 chain 99710 chr5 180915260 + 126904965 126906374 LTR12C 1709 + 0 1709 36855 338 0 43 83 5 4 23 0 1 112 5 6 102 3 118 7 1 0 123 0 28 16 26 30 59 5 6 13 1 0 5 3 1 97 44 13 76 1 2 84 1 0 4 0 1 44 0 1 13 0 142 23 20 19 72 chain 2226 chr5 180915260 + 126905783 126905809 LTR12C 1709 + 1133 1159 181863 26 chain 30163 chr5 180915260 + 126942344 126942659 AluYb8 318 - 3 318 84299 315 chain 20379 chr5 180915260 + 126950158 126950387 L1PA5 6144 + 5903 6132 125964 229 chain 21497 chr5 180915260 + 126951150 126951504 THE1D 372 + 0 357 122157 153 67 71 116 1 0 17 chain 2979 chr5 180915260 + 126970536 126970570 MIR 256 - 98 132 225460 34 chain 15870 chr5 180915260 + 126977069 126977240 L1PA3long 6157 + 5978 6149 138745 171 chain 3443 chr5 180915260 + 127010134 127010175 MLT2A1 477 + 437 477 216330 21 1 0 19 chain 457278 chr5 180915260 + 127010175 127015837 HERVL-int 5654 + 0 5635 8500 92 0 2 343 0 2 5 2 0 98 0 1 22 61 0 52 1 2 505 2 0 205 15 10 411 0 1 1632 10 6 601 0 14 510 5 6 95 0 6 136 0 6 553 1 0 118 0 1 171 1 14 15 chain 97441 chr5 180915260 + 127057724 127059208 L1MA3 4352 - 680 2167 37444 150 0 1 118 0 1 4 23 26 74 0 1 187 0 1 212 10 18 7 6 0 130 61 63 81 4 3 13 1 0 57 17 12 161 3 0 6 4 5 28 1 0 52 21 23 53 chain 21933 chr5 180915260 + 127062891 127063181 AluSp 311 + 10 300 120483 38 2 0 5 10 11 217 0 1 18 chain 289119 chr5 180915260 + 127063226 127067265 L1PA10 4194 + 397 4141 14076 6 1 0 58 0 26 669 1 0 113 2 1 488 333 17 247 11 4 178 0 1 4 1 0 268 4 2 21 8 9 101 1 2 5 1 0 6 1 2 148 1 0 122 3 4 237 0 4 118 11 12 240 0 1 12 0 1 76 0 1 515 3 0 25 chain 549668 chr5 180915260 + 127069623 127075644 L1PA2 6032 - 6 6027 1493 4914 0 2 152 1 0 702 5 4 247 chain 543001 chr5 180915260 + 127082800 127088827 L1PA3long 6157 - 0 6155 2343 1961 4 0 3126 0 2 164 0 128 604 18 20 150 chain 20883 chr5 180915260 + 127091575 127091841 AluY 311 + 33 299 124344 106 17 17 143 chain 268896 chr5 180915260 + 127115451 127119853 L1PB1 5432 - 14 3994 15239 14 1 0 13 1 0 22 1 0 22 3 1 14 1 0 4 3 1 19 16 6 6 2 0 15 1 0 43 2 1 16 5 4 23 0 1 24 2 0 10 2 0 3 2 0 9 1 0 9 1 0 22 81 0 13 1 0 169 10 0 302 7 4 283 10 4 605 5 0 222 0 1 180 0 6 61 0 7 107 1 9 221 1 0 33 0 3 44 3 0 143 22 24 84 0 5 66 5 6 14 2 0 207 696 374 370 0 4 95 0 5 7 chain 3071 chr5 180915260 + 127178210 127178290 MER45A 178 + 99 177 223555 24 13 11 17 12 12 14 chain 5426 chr5 180915260 + 127199162 127199327 L1MB3 1562 + 1355 1507 190738 40 6 0 7 1 0 4 61 43 31 0 12 15 chain 42821 chr5 180915260 + 127214362 127214821 L1PA2 6032 - 1467 1926 65627 459 chain 134762 chr5 180915260 + 127214822 127216298 L1PA2 6032 + 4561 6023 27064 933 17 3 526 chain 5536 chr5 180915260 + 127226022 127226093 LTR8A 794 + 363 433 189704 32 1 0 38 chain 10001 chr5 180915260 + 127251380 127251515 MER30 238 + 75 230 160575 33 4 18 26 0 6 72 chain 23708 chr5 180915260 + 127281630 127281995 L1PA15 4387 - 21 371 111993 9 1 0 26 5 0 61 6 3 50 1 0 11 4 0 11 5 6 4 1 0 81 1 0 88 chain 31211 chr5 180915260 + 127312118 127312513 MER51B 395 - 0 395 82142 150 1 0 124 3 4 117 chain 222220 chr5 180915260 + 127324471 127327177 L1PA7 6471 - 1 2712 17744 109 2 1 39 1 0 11 0 2 495 0 2 36 20 30 123 2 1 54 0 1 460 0 1 35 2 0 159 1 0 171 5 0 62 0 4 305 0 1 4 2 1 57 9 4 473 0 1 69 chain 4008 chr5 180915260 + 127327177 127327221 L1PA7 6471 + 3683 3727 200174 44 chain 6296 chr5 180915260 + 127363616 127363740 MER53 195 - 33 156 182836 20 3 0 5 29 31 67 chain 126240 chr5 180915260 + 127364216 127365638 L1PA4 6152 - 0 1421 29022 13 3 5 596 1 0 233 2 0 574 chain 57326 chr5 180915260 + 127368648 127369540 L1PA14 3548 + 2603 3465 54323 84 4 1 161 6 7 82 35 31 32 2 0 4 2 0 105 2 0 5 5 3 13 1 0 6 1 0 195 1 0 11 5 1 35 4 2 12 1 0 5 3 2 15 5 6 34 6 0 10 chain 499508 chr5 180915260 + 127379619 127385707 L1PA6 6164 + 0 6159 6861 448 8 0 119 1 0 118 17 18 84 0 17 36 0 1 287 16 17 282 4 5 297 0 1 1459 0 1 50 6 10 29 0 2 249 0 1 172 1 3 157 9 10 41 0 5 438 5 9 308 0 1 188 0 4 27 15 19 753 0 1 270 0 28 194 chain 12769 chr5 180915260 + 127386948 127387088 L1PA5 6144 + 5997 6137 149181 140 chain 30565 chr5 180915260 + 127408860 127409282 MER1A 529 - 0 433 83270 32 39 50 351 chain 10370 chr5 180915260 + 127431289 127431476 MER30 238 + 24 230 158830 84 34 50 38 5 8 26 chain 58842 chr5 180915260 + 127442997 127443759 L1PA7 6471 - 12 785 53493 137 0 1 4 11 10 196 0 1 40 0 1 100 10 9 112 0 11 80 2 1 70 chain 47568 chr5 180915260 + 127453269 127454049 L1PB2 3958 + 3073 3838 60792 136 1 5 55 1 0 38 11 9 20 6 5 17 0 3 17 1 0 61 2 0 13 4 0 89 1 6 10 9 0 60 7 6 32 0 4 22 19 18 6 1 0 7 4 0 34 3 1 20 7 0 7 2 8 18 1 0 38 chain 23487 chr5 180915260 + 127455109 127455372 L1PA3long 6157 - 1195 1458 111746 263 chain 107886 chr5 180915260 + 127455372 127456561 L1PA3long 6157 + 4966 6157 34760 17 0 1 17 0 1 1155 chain 21635 chr5 180915260 + 127467073 127467402 AluY 311 + 0 287 121637 54 31 1 78 16 6 143 2 0 5 chain 19645 chr5 180915260 + 127494229 127494609 L1PA15 4387 - 60 420 128268 12 24 21 24 6 3 49 2 1 9 4 0 23 2 1 42 23 22 13 2 3 92 8 0 45 chain 93170 chr5 180915260 + 127494909 127496075 L1PA7 6471 + 5267 6454 38608 40 0 5 33 0 1 275 8 11 34 12 24 114 0 1 502 9 8 139 chain 14018 chr5 180915260 + 127498534 127498750 MER30 238 + 0 238 144510 16 13 20 63 2 0 6 5 23 11 1 0 99 chain 7594 chr5 180915260 + 127533996 127534089 MER54A 897 + 63 156 173590 93 chain 21554 chr5 180915260 + 127586143 127586764 MSTA 426 + 2 425 121947 97 9 14 20 42 48 9 221 0 15 1 0 24 5 0 7 17 21 45 2 16 107 chain 71183 chr5 180915260 + 127602565 127603513 L1PA8A 6298 - 7 957 47852 37 5 7 55 10 10 13 35 29 32 0 1 165 0 4 352 0 1 90 0 1 4 2 1 148 chain 69311 chr5 180915260 + 127603513 127604404 L1P3 4156 + 3243 4139 48563 69 0 1 231 5 9 20 1 6 30 1 0 224 1 0 274 2 0 7 2 1 24 chain 543265 chr5 180915260 + 127629538 127635539 L1PA3long 6157 - 7 6157 2303 904 0 3 2484 0 1 344 0 1 1457 0 4 48 4 132 347 1 12 258 1 2 153 chain 316493 chr5 180915260 + 127656990 127661212 L1PA7 6471 - 6 3915 12742 6 4 0 7 0 1 177 0 2 571 1 3 82 0 2 11 0 4 241 5 4 40 0 1 313 0 10 20 0 4 288 0 12 58 0 2 356 34 0 16 1 2 304 0 2 307 3 0 37 18 22 61 2 0 39 0 5 296 323 0 245 1 4 269 1 0 85 chain 5971 chr5 180915260 + 127727022 127727095 Charlie1a 1436 + 1117 1190 185508 73 chain 22681 chr5 180915260 + 127734396 127734738 THE1B 368 + 0 368 117157 44 0 15 113 3 2 22 1 0 4 37 50 118 chain 29164 chr5 180915260 + 127736500 127736854 THE1A 353 + 0 353 88230 110 1 0 243 chain 29747 chr5 180915260 + 127779747 127780064 AluYb8 318 - 1 318 85666 317 chain 82892 chr5 180915260 + 127782542 127783585 MER11B 1079 + 0 1057 42382 316 5 22 199 0 1 4 6 5 89 12 5 126 4 6 103 0 1 156 0 1 23 chain 411320 chr5 180915260 + 127791358 127797645 L1PA8A 6298 + 90 6288 9769 10 3 0 19 19 10 18 1 0 10 2 1 31 2 0 15 10 7 10 1 0 8 1 0 5 38 31 33 20 18 18 0 1 7 7 0 29 54 33 17 2 0 11 1 0 3 1 0 110 0 700 16 693 0 957 14 5 184 6 0 10 20 20 71 1 2 122 14 24 230 0 7 76 0 4 399 3 0 33 1 0 144 6 7 14 0 1 205 1 0 97 46 44 105 14 6 448 0 2 88 44 0 125 0 1 133 6 4 345 0 5 310 2 1 89 0 1 98 1 3 183 0 1 82 1 0 240 0 7 49 2 0 5 7 9 31 chain 24899 chr5 180915260 + 127822318 127822641 L1PA6 6164 - 2 330 105346 8 2 0 147 8 14 68 0 1 90 chain 62420 chr5 180915260 + 127824196 127824892 L1PA3long 6157 - 0 698 51715 216 0 1 419 0 1 61 chain 104246 chr5 180915260 + 127839043 127840540 THE1B-int 1605 + 18 1591 35678 89 0 3 64 0 24 76 14 20 103 0 64 18 4 3 206 61 48 26 8 2 126 4 5 210 25 22 40 6 7 319 0 1 64 1 0 33 chain 3380 chr5 180915260 + 127866620 127866657 L1PB1 5432 - 513 550 217470 37 chain 25428 chr5 180915260 + 127866657 127867203 L1PB1 5432 + 4922 5385 102553 115 16 16 49 0 3 13 103 40 10 2 0 9 1 0 42 1 0 18 1 0 42 2 1 16 23 12 19 8 5 14 2 0 24 1 0 15 chain 8968 chr5 180915260 + 127883265 127883391 MER41-int 2638 - 1144 1274 165784 28 5 9 93 chain 195328 chr5 180915260 + 127890261 127892448 L1PA5 6144 + 3920 6122 19554 702 1 0 148 0 12 509 0 4 827 chain 19985 chr5 180915260 + 127918165 127918497 THE1C 375 + 0 331 127192 70 1 0 17 27 28 64 28 27 125 chain 4641 chr5 180915260 + 127927443 127927520 MADE1 96 + 0 95 199167 29 1 2 15 4 21 28 chain 3180 chr5 180915260 + 127935139 127935205 L1MA4 2864 + 2740 2804 221326 27 14 12 25 chain 251921 chr5 180915260 + 127940490 127943248 L1PA2 6032 - 0 2743 16130 143 14 0 982 1 0 1618 chain 23176 chr5 180915260 + 127965368 127965736 THE1D 372 - 0 372 114782 32 1 0 64 10 14 38 37 39 5 1 0 180 chain 521417 chr5 180915260 + 127985702 127992122 L1PA7 6471 - 10 6468 5015 145 0 9 448 0 3 167 1 2 58 0 2 6 1 0 263 0 1 12 0 1 490 0 4 169 8 16 179 0 1 260 6 12 278 3 1 344 1 0 4 1 5 83 5 4 485 7 9 305 2 1 22 0 1 29 6 1 382 12 16 105 3 1 72 0 2 34 6 5 630 11 9 171 0 4 857 0 1 349 chain 18039 chr5 180915260 + 127997235 127997555 THE1C 375 + 18 335 132763 29 13 4 19 17 18 12 14 15 68 1 2 28 7 10 112 chain 6424 chr5 180915260 + 128004136 128004214 ERVL-int 1947 - 1753 1831 181833 78 chain 20535 chr5 180915260 + 128006022 128006263 LTR7 482 - 8 280 125526 182 0 31 59 chain 26442 chr5 180915260 + 128006263 128006594 HERVH-int 3825 - 1871 2185 98263 116 18 1 197 chain 30706 chr5 180915260 + 128006627 128007030 LTR7 482 - 5 482 83024 66 0 1 117 0 31 147 8 46 10 7 11 48 chain 28177 chr5 180915260 + 128012288 128012646 THE1B 368 + 0 357 92381 172 1 0 185 chain 29571 chr5 180915260 + 128061355 128061714 THE1B-int 1605 - 1237 1605 86327 220 0 10 113 1 0 25 chain 50975 chr5 180915260 + 128064397 128065091 L1PA8 5853 - 0 690 58328 93 1 0 19 2 1 46 15 16 69 2 0 45 1 0 401 chain 141120 chr5 180915260 + 128065092 128066949 L1PA8 5853 + 3152 5050 25967 62 1 0 94 10 10 363 5 11 31 38 0 184 0 2 18 0 53 10 0 15 203 0 1 397 2 0 23 5 9 65 1 0 151 0 5 147 1 0 4 2 0 40 chain 156150 chr5 180915260 + 128067037 128069062 HERVH-int 3825 + 1352 3825 23841 79 9 0 260 0 27 232 0 35 13 0 6 86 0 5 15 2 1 297 0 1 5 5 4 135 6 3 263 0 367 16 1 8 33 18 17 88 4 19 458 chain 24945 chr5 180915260 + 128120927 128121294 MLT2A1 477 - 92 477 105081 141 1 2 68 9 13 10 8 9 97 1 9 15 1 5 16 chain 110969 chr5 180915260 + 128130335 128131615 L1PA5 6144 - 4 1276 33940 156 11 4 295 2 0 5 0 2 384 2 0 150 0 1 275 chain 30493 chr5 180915260 + 128131615 128131950 L1PA5 6144 + 4507 4842 83235 335 chain 105874 chr5 180915260 + 128155729 128156888 L1PA3long 6157 - 5 1164 35288 1159 chain 44855 chr5 180915260 + 128159625 128160181 MER41A 554 + 0 554 63226 285 2 0 269 chain 11584 chr5 180915260 + 128175140 128175315 MER30 238 - 1 192 153953 105 8 0 7 10 34 45 chain 267529 chr5 180915260 + 128183471 128187414 L1MA1 4479 + 278 4180 15316 40 2 1 23 0 2 7 3 2 42 29 23 148 1 0 18 0 2 64 0 1 133 12 0 9 8 16 80 0 1 336 0 1 138 38 26 29 31 35 227 2 3 156 1 2 40 1 2 27 0 2 107 0 3 66 0 4 68 4 0 255 2 1 15 0 1 75 12 12 81 1 0 66 1 0 106 2 0 27 6 5 40 0 1 19 2 0 92 1 0 27 2 0 8 1 0 164 2 0 21 4 1 72 1 0 14 48 55 62 1 0 7 3 0 131 1 8 140 2 1 46 1 0 24 2 0 16 1 0 71 1 0 19 2 0 14 1 0 70 1 0 17 1 0 5 9 5 115 8 7 29 2 0 32 1 0 12 1 0 11 3 1 9 7 0 8 chain 28996 chr5 180915260 + 128195955 128196391 L1PA13 3608 - 120 557 89004 22 1 0 14 16 12 32 0 13 9 4 2 48 2 1 60 3 1 115 1 0 30 2 1 77 chain 138955 chr5 180915260 + 128217977 128220238 L1PB1 5432 - 10 1952 26314 4 1 0 14 1 0 12 1 0 22 1 0 25 2 0 12 14 7 18 23 12 15 1 0 46 1 0 14 2 1 13 0 1 38 18 12 18 1 0 24 15 0 11 262 0 250 8 10 30 0 1 184 3 0 94 0 2 110 0 8 243 0 1 178 0 1 24 7 5 37 2 1 5 0 1 288 1 0 78 23 5 67 chain 15375 chr5 180915260 + 128240322 128240495 L1PA7 6471 - 4 177 140277 173 chain 33971 chr5 180915260 + 128267891 128268380 MER9a3 513 - 0 513 77659 79 2 3 93 0 1 4 1 21 24 19 1 12 5 22 69 4 5 159 0 2 18 chain 37212 chr5 180915260 + 128268650 128269127 LTR15 485 + 0 475 73222 58 3 1 66 4 0 25 0 2 125 0 4 158 3 0 17 0 1 18 chain 499022 chr5 180915260 + 128273252 128279438 L1PA6 6164 - 13 6162 6894 27 51 0 99 18 33 1197 22 0 1098 0 1 174 0 1 331 0 1 863 0 1 1137 0 9 136 2 1 44 4 1 33 0 25 429 13 12 298 0 1 80 21 7 34 0 1 75 chain 109306 chr5 180915260 + 128280579 128281924 L1P1 4361 - 20 1359 34367 12 2 1 23 1 0 157 1 0 373 1 2 427 0 1 113 8 4 57 1 0 169 chain 65771 chr5 180915260 + 128281924 128282703 L1P2 5180 + 1319 2099 50164 590 0 1 189 chain 29801 chr5 180915260 + 128284151 128284465 AluYb8 318 - 4 318 85430 314 chain 41694 chr5 180915260 + 128288704 128289194 L1PA4 6152 + 5663 6151 67035 7 0 1 106 0 2 200 0 1 21 0 1 2 7 0 147 chain 480300 chr5 180915260 + 128292406 128298186 L1PA5 6144 - 1 5782 7720 147 5 6 141 1 3 552 1 0 523 4 5 92 4 5 224 0 5 51 4 2 75 1 0 1226 2 1 638 0 1 69 0 1 566 0 1 278 6 5 346 24 15 132 5 6 188 0 17 14 17 0 20 0 1 89 0 1 335 chain 507016 chr5 180915260 + 128303459 128309598 L1PA6 6164 - 2 6164 6395 847 1 0 818 1 0 194 0 2 654 0 5 87 1 2 363 0 1 77 6 7 715 0 2 59 1 0 4 3 0 51 1 0 551 0 1 255 1 2 25 22 17 385 0 3 211 0 17 296 12 11 287 0 6 6 5 0 39 22 23 139 chain 58279 chr5 180915260 + 128326306 128327034 LTR17 781 - 56 781 53823 398 2 1 170 1 0 100 1 0 56 chain 23876 chr5 180915260 + 128342877 128343158 AluSg7 307 + 21 303 111052 110 0 1 171 chain 133881 chr5 180915260 + 128369393 128371030 L1PA7 6471 - 1408 3064 27245 255 5 6 134 0 4 55 0 2 348 1 2 377 0 1 213 0 5 103 5 9 110 0 1 31 chain 111659 chr5 180915260 + 128371030 128372447 L1PA7 6471 + 5052 6469 33693 398 1 0 125 12 8 30 3 6 279 0 1 144 0 1 316 20 20 89 chain 3990 chr5 180915260 + 128375017 128375064 MLT1A 405 + 345 392 207529 47 chain 28753 chr5 180915260 + 128378692 128378992 AluYa8 305 - 5 305 90103 300 chain 3056 chr5 180915260 + 128431916 128431957 L1MA4 2864 - 72 111 223873 25 2 0 14 chain 7400 chr5 180915260 + 128471848 128471946 L1PA10 4194 + 4056 4150 174770 4 1 0 56 3 0 34 chain 53844 chr5 180915260 + 128475336 128475966 L1PA5 6144 - 3 633 56458 7 2 0 11 0 2 610 chain 456345 chr5 180915260 + 128482875 128488911 L1PA7 6471 - 4 5753 8529 693 0 1 131 0 1 23 1 4 70 3 1 268 6 0 6 6 12 14 4 0 52 1 0 234 3 2 150 0 2 132 0 4 39 1 2 20 1 10 195 0 5 112 0 3 564 0 1 215 6 0 48 0 4 341 4 8 236 3 9 174 309 0 44 13 0 70 6 7 531 1 0 80 0 2 182 7 6 152 6 9 313 10 8 336 6 8 31 4 0 6 1 5 72 0 1 100 chain 4215 chr5 180915260 + 128489752 128489803 L1M1 2793 - 991 1042 204346 51 chain 9619 chr5 180915260 + 128490669 128490778 MER50B 698 - 44 153 162495 109 chain 80242 chr5 180915260 + 128490781 128491673 L1PA3long 6157 - 0 891 43489 426 1 0 465 chain 204988 chr5 180915260 + 128494955 128498848 L1PA13 3608 - 116 3522 18857 26 1 0 18 9 5 39 10 8 5 1 0 31 1 0 22 10 9 56 2 0 114 1 0 27 1 0 25 4 3 32 127 29 104 0 4 56 29 9 144 0 3 135 6 8 156 41 20 61 1 4 8 3 2 28 4 7 34 41 12 8 7 0 114 8 7 44 5 7 60 9 13 5 1 0 22 5 14 16 1 0 4 18 19 261 2 0 69 24 26 35 15 14 41 20 19 341 0 3 12 10 11 185 1 0 34 11 14 100 22 20 94 0 1 4 3 0 44 1 10 45 1 0 16 383 55 16 3 1 14 0 2 12 1 0 121 13 19 47 40 29 21 0 5 11 0 3 22 9 6 19 6 4 19 1 0 4 chain 497801 chr5 180915260 + 128516781 128522490 L1PA4 6152 - 1 5714 6969 849 0 4 329 4 1 49 12 8 442 1 2 115 0 4 838 0 1 166 6 6 172 1 0 234 0 1 352 0 13 1032 0 1 333 25 12 749 chain 114154 chr5 180915260 + 128543725 128545751 L1P2 5180 - 2206 3653 33049 578 1 0 41 0 1 27 17 0 119 0 2 66 571 7 606 chain 47200 chr5 180915260 + 128544613 128545145 L1PA4 6152 - 9 541 61045 232 0 1 18 1 0 281 chain 243858 chr5 180915260 + 128545752 128548884 L1PA7 6471 + 3297 6467 16572 213 0 1 6 6 7 56 6 9 41 5 3 284 10 9 5 0 3 237 0 2 352 0 4 140 0 8 77 0 1 155 0 1 4 1 0 40 1 0 64 5 4 219 1 0 107 0 1 181 1 2 91 10 5 86 1 4 30 1 14 31 1 2 340 0 1 29 0 1 80 5 12 37 26 24 147 chain 249613 chr5 180915260 + 128569251 128572082 L1PA5 6144 - 15 2848 16275 238 1 0 251 0 1 54 0 1 42 1 0 241 1 5 674 1 0 947 1 0 379 chain 20005 chr5 180915260 + 128573026 128573292 L1PA7 6471 - 1 263 127131 155 1 0 28 14 11 68 chain 23900 chr5 180915260 + 128573293 128573579 L1PA7 6471 + 5843 6130 110909 60 5 0 139 0 6 82 chain 6691 chr5 180915260 + 128573580 128573652 L1PA7 6471 + 6130 6202 179751 72 chain 9206 chr5 180915260 + 128583589 128583721 MER85 139 + 5 139 164527 6 0 1 81 11 12 34 chain 13135 chr5 180915260 + 128585081 128585285 L1PA8 5853 + 5637 5847 147705 8 0 8 26 1 0 9 9 10 42 2 1 19 1 0 87 chain 78165 chr5 180915260 + 128596677 128597871 L1PB1 5432 - 10 1208 44432 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 15 6 6 2 0 15 1 0 7 0 2 30 23 43 31 2 0 9 2 0 3 2 0 11 4 3 4 1 0 23 3 0 8 6 9 12 0 4 117 9 6 142 1 12 175 4 0 7 9 11 388 chain 24696 chr5 180915260 + 128597871 128598182 L1PB1 5432 + 3914 4225 106029 311 chain 7194 chr5 180915260 + 128611154 128611252 Tigger3a 397 + 157 254 176119 77 1 0 20 chain 530097 chr5 180915260 + 128620939 128627050 L1PA4 6152 - 9 6149 4176 324 0 1 512 0 5 1207 0 2 200 0 2 392 0 1 144 0 1 148 0 1 1358 2 1 403 2 1 204 5 4 496 5 8 86 0 3 589 0 13 34 chain 15595 chr5 180915260 + 128629818 128630001 MER4E 760 - 0 184 139601 17 0 1 166 chain 209134 chr5 180915260 + 128632568 128634943 L1PA5 6144 - 9 2381 18555 290 4 0 799 0 1 356 2 3 649 1 0 274 chain 368437 chr5 180915260 + 128635510 128641591 L1PA8A 6298 - 7 5154 11143 213 0 1 90 1 7 16 1 0 4 0 1 186 58 22 186 28 32 14 7 9 24 1 0 203 369 23 441 8 7 25 0 3 259 30 31 117 55 57 419 0 1 12 0 1 7 0 7 7 19 7 43 0 1 41 0 1 74 0 2 92 1 39 90 6 8 39 7 11 44 4 1 114 2 0 491 7 11 17 0 1 224 31 13 89 19 22 240 621 17 92 4 5 133 10 10 150 0 2 55 44 46 497 chain 257583 chr5 180915260 + 128646458 128649324 L1PA3long 6157 + 3259 6142 15840 429 0 1 392 0 7 268 0 6 89 0 3 589 2 1 281 0 1 816 chain 35846 chr5 180915260 + 128650683 128651142 L1PA7 6471 - 2 456 75067 203 14 10 196 8 7 38 chain 122757 chr5 180915260 + 128656209 128657765 THE1B-int 1605 - 19 1605 30135 500 0 2 409 0 1 11 1 2 11 10 7 186 0 25 129 0 1 115 0 3 184 chain 24935 chr5 180915260 + 128664189 128664524 L1PA6 6164 - 2 351 105137 8 1 0 7 1 0 183 22 38 113 chain 21793 chr5 180915260 + 128688113 128688457 L1MA2 4263 + 2460 2824 121043 69 13 4 23 3 6 81 0 10 72 0 2 22 0 19 8 11 6 42 chain 12131 chr5 180915260 + 128741214 128741344 L1PA4 6152 + 6013 6143 151688 130 chain 24135 chr5 180915260 + 128743372 128743806 THE1A 353 + 0 353 109553 186 0 1 12 1 0 10 98 5 79 0 2 18 0 13 9 3 0 18 chain 12537 chr5 180915260 + 128787228 128787433 L1PA8 5853 + 5641 5847 150090 29 2 0 5 17 18 16 0 4 30 1 0 17 1 0 87 chain 2945 chr5 180915260 + 128810012 128810051 L1MB7 1623 - 194 232 226224 7 1 0 31 chain 25044 chr5 180915260 + 128816762 128817147 THE1D 372 - 0 372 104577 32 1 0 146 50 39 54 1 0 101 chain 77036 chr5 180915260 + 128869097 128869982 L1PA3long 6157 - 2812 3696 44951 174 1 0 327 1 0 110 0 1 272 chain 244415 chr5 180915260 + 128869982 128872758 L1PA3long 6157 + 3359 6153 16537 163 0 1 423 0 1 61 0 9 343 0 4 34 1 0 822 0 1 576 0 1 105 0 2 248 chain 74554 chr5 180915260 + 128872766 128873621 L1PA4 6152 + 5291 6146 46234 6 4 0 4 0 1 784 6 9 51 chain 75790 chr5 180915260 + 128881269 128882094 L1PA2 6032 + 5209 6032 45599 818 2 0 5 chain 140937 chr5 180915260 + 128883303 128884879 L1PA4 6152 + 4575 6151 25993 718 2 1 95 0 1 761 chain 21207 chr5 180915260 + 128897025 128897250 AluYb8 318 + 85 310 123192 225 chain 14799 chr5 180915260 + 128910019 128910231 L1PA8A 6298 - 10 218 141939 57 0 1 38 2 0 5 9 10 57 5 1 39 chain 508518 chr5 180915260 + 128914157 128921044 L1PA7 6471 - 14 6466 6277 39 0 4 89 4 5 10 19 20 47 0 2 617 0 3 365 1 4 640 0 1 90 0 2 80 0 1 507 1 0 165 167 0 124 6 7 112 3 2 111 1 0 39 19 19 249 0 4 209 0 4 191 4 1 6 0 4 44 1 0 24 0 1 16 4 7 58 10 14 22 321 0 937 5 6 271 13 32 351 0 1 192 2 0 248 0 1 51 4 5 131 15 14 87 16 11 6 0 6 143 chain 127364 chr5 180915260 + 128945986 128947441 L1PA5 6144 - 2 1458 28726 767 1 3 679 1 0 7 chain 263215 chr5 180915260 + 128947441 128950942 L1P2 5180 + 1647 4708 15527 200 447 0 79 0 1 43 0 1 324 0 1 15 1 0 8 0 1 79 0 1 233 5 6 39 0 1 1007 0 1 1021 chain 36530 chr5 180915260 + 128947669 128948088 L1PA4 6152 - 1 420 74202 50 0 1 208 1 0 160 chain 96542 chr5 180915260 + 128960534 128961690 L1PA6 6164 - 3 1169 37681 178 3 1 150 0 1 396 7 1 414 0 17 8 chain 3909 chr5 180915260 + 128961690 128961732 L1PA6 6164 + 5003 5045 196877 42 chain 3509 chr5 180915260 + 128967740 128967842 MER58B 340 - 23 130 215226 31 14 15 13 24 28 20 chain 21756 chr5 180915260 + 128969871 128970295 L1PA13 3608 + 3114 3522 121189 12 4 0 6 0 1 26 1 0 69 0 4 41 2 0 63 1 0 24 1 2 18 19 16 16 0 2 27 11 7 18 1 0 10 35 28 14 1 0 4 chain 28935 chr5 180915260 + 128981578 128981880 AluYa5 310 - 8 310 89291 302 chain 3504 chr5 180915260 + 129010678 129010718 L1MEf 1413 - 424 464 215293 40 chain 29890 chr5 180915260 + 129049830 129050142 AluYb8 318 + 0 312 85128 312 chain 8710 chr5 180915260 + 129060128 129060231 MER50 708 - 24 127 167142 103 chain 37704 chr5 180915260 + 129063529 129064053 MER41B 635 + 0 521 72548 10 0 1 4 1 0 31 0 1 46 1 0 32 1 2 136 4 0 198 11 10 9 1 2 39 chain 5509 chr5 180915260 + 129064067 129064127 L1PA4 6152 - 11 71 189951 60 chain 66103 chr5 180915260 + 129087582 129088431 L1PA8 5853 + 5009 5853 50052 73 1 3 479 1 0 44 2 0 69 23 21 42 2 1 19 1 0 93 chain 14190 chr5 180915260 + 129092049 129092327 L1PB1 5432 - 19 273 143920 9 1 0 13 1 0 21 1 0 24 2 0 14 57 43 9 1 0 43 1 0 16 2 1 53 2 0 8 chain 8209 chr5 180915260 + 129113600 129113703 L1MA4 2864 + 1813 1916 169902 103 chain 21140 chr5 180915260 + 129127245 129127821 L1PB1 5432 - 10 722 123407 18 1 0 13 1 0 21 1 0 20 89 68 45 1 0 12 6 5 52 2 0 9 2 0 3 2 0 12 6 5 4 1 0 21 122 292 112 chain 185496 chr5 180915260 + 129129828 129132372 L1PBa 3878 - 85 2659 20465 13 5 3 4 1 0 11 20 14 11 2 0 20 7 6 116 0 1 20 3 0 276 0 15 221 4 5 24 0 1 7 5 0 249 10 11 55 5 0 3 5 0 56 0 1 595 0 18 123 1 0 34 1 0 263 3 0 46 8 11 96 13 17 126 0 1 24 0 14 31 0 5 27 chain 489822 chr5 180915260 + 129132408 129139691 L1PA7 6471 - 16 6465 7375 55 6 7 768 9 11 64 0 1 185 0 1 980 0 1 103 0 1 8 0 1 164 1011 0 7 0 4 85 1 0 70 16 18 359 6 7 30 1 0 281 19 19 159 0 1 87 0 1 335 0 1 6 8 0 5 16 0 871 1 0 359 0 3 494 14 14 153 0 1 4 1 10 105 0 4 89 6 0 6 12 188 125 4 3 195 chain 81796 chr5 180915260 + 129134760 129135761 MER11A 1151 - 4 1151 42846 36 0 4 176 1 2 45 0 49 144 0 1 5 1 0 141 0 4 151 0 1 7 8 0 87 4 0 117 0 99 78 chain 244724 chr5 180915260 + 129152601 129155323 L1PA4 6152 + 3412 6143 16516 92 0 1 87 0 2 570 0 1 873 0 1 259 0 4 841 chain 2525 chr5 180915260 + 129167070 129167116 MER20 218 - 136 181 232828 13 1 2 4 1 0 6 1 0 20 chain 16901 chr5 180915260 + 129167961 129168259 L1PB1 5432 - 12 282 135844 16 1 0 13 1 0 21 1 0 24 2 0 14 11 8 13 8 0 15 3 0 16 1 0 43 1 0 15 3 2 51 2 0 11 4 0 8 chain 98777 chr5 180915260 + 129202596 129204005 L1PA14 3548 + 67 1477 37081 6 1 0 10 12 7 58 5 0 69 1 0 15 7 6 11 21 30 20 2 0 64 0 4 348 14 18 116 24 17 298 0 4 230 5 7 72 chain 177062 chr5 180915260 + 129225567 129227724 L1PA7 6471 - 1455 3627 21246 339 1 9 666 2 0 152 0 1 301 11 19 28 1 0 435 0 1 221 chain 115268 chr5 180915260 + 129227724 129229155 L1PA7 6471 + 5048 6468 32664 57 0 1 315 0 1 75 20 6 119 0 5 504 0 1 71 5 4 102 1 0 8 1 0 142 2 0 9 chain 290849 chr5 180915260 + 129229819 129233040 L1PA3long 6157 - 0 3231 13970 843 1 5 426 0 4 208 0 1 725 0 1 1018 chain 29685 chr5 180915260 + 129254518 129254830 AluYb8 318 + 0 312 85885 312 chain 28578 chr5 180915260 + 129283892 129284572 L1PB1 5432 - 5 657 90830 5 2 0 18 1 0 13 137 117 38 24 23 45 2 0 10 10 0 11 52 49 52 0 2 61 1 0 5 8 9 81 6 7 75 1 9 22 chain 156865 chr5 180915260 + 129288674 129290547 L1PA7 6471 - 2 1876 23746 10 2 0 150 1 2 604 1 2 80 1 0 632 6 4 313 0 4 73 chain 23492 chr5 180915260 + 129310661 129310921 L1PA4 6152 + 5883 6143 113165 260 chain 7624 chr5 180915260 + 129324770 129324864 MSTD 398 - 17 111 173384 94 chain 114316 chr5 180915260 + 129328969 129330247 L1P1 4361 - 1785 3061 32989 262 1 0 378 1 0 636 chain 42813 chr5 180915260 + 129330252 129330739 L1PA4 6152 + 5653 6140 65634 487 chain 57994 chr5 180915260 + 129333207 129333867 L1PA6 6164 - 2 662 53979 9 0 2 323 2 0 326 chain 11620 chr5 180915260 + 129348122 129348476 THE1C 375 - 0 375 153810 22 10 18 86 176 189 60 chain 53326 chr5 180915260 + 129363175 129363769 L1PA5 6144 - 9 603 56816 594 chain 6421 chr5 180915260 + 129408555 129408632 L1MA7 2200 + 1871 1948 181850 77 chain 26887 chr5 180915260 + 129412509 129412800 L1PA3long 6157 + 5866 6157 96682 291 chain 98279 chr5 180915260 + 129421148 129422229 L1PA3long 6157 - 2847 3929 37138 1070 0 1 11 chain 257163 chr5 180915260 + 129422229 129425075 L1PA3long 6157 + 3313 6157 15869 860 0 1 971 9 2 163 0 4 843 chain 2895 chr5 180915260 + 129448046 129448079 MER5A 189 + 43 76 227112 33 chain 8069 chr5 180915260 + 129450095 129450185 5S 121 + 0 90 170652 90 chain 3088 chr5 180915260 + 129456817 129456876 MER5A1 166 - 12 69 223146 19 8 7 5 1 0 26 chain 6290 chr5 180915260 + 129484845 129484920 MSTB-int 1649 - 1574 1649 182886 75 chain 7102 chr5 180915260 + 129502680 129502772 MER67D 511 - 27 119 176747 18 0 1 44 1 0 29 chain 12123 chr5 180915260 + 129506344 129506542 L1PA17 2846 - 153 344 151721 44 1 0 17 1 0 33 12 9 67 6 4 17 chain 13321 chr5 180915260 + 129510674 129510839 L1P3 4156 - 1282 1448 145797 11 0 1 154 chain 154754 chr5 180915260 + 129510839 129512675 L1PA7 6471 + 4599 6458 24011 415 0 1 282 0 4 111 4 5 170 3 4 112 2 0 218 0 9 231 0 1 80 0 1 172 4 11 32 chain 41604 chr5 180915260 + 129561435 129561899 L1PA5 6144 - 1305 1769 66920 464 chain 114556 chr5 180915260 + 129561899 129563196 L1PA5 6144 + 4844 6142 32934 497 0 1 800 chain 32475 chr5 180915260 + 129571312 129571686 L1PA5 6144 + 5750 6129 80069 27 0 6 108 1 0 238 chain 210872 chr5 180915260 + 129581706 129584319 L1PA7 6471 - 14 2647 18436 130 18 19 692 0 2 11 8 7 4 0 1 236 0 1 56 0 1 115 0 1 105 0 1 123 1 0 213 0 22 707 15 7 82 0 1 30 2 1 65 chain 7292 chr5 180915260 + 129586714 129586830 L1P5 443 - 334 442 175495 61 1 4 35 11 0 8 chain 301005 chr5 180915260 + 129600011 129603272 L1PA2 6032 - 18 3278 13373 3100 1 0 160 chain 5434 chr5 180915260 + 129615919 129615985 MLT1A0 366 + 82 148 190673 66 chain 14005 chr5 180915260 + 129630535 129630893 THE1B 368 + 0 368 144565 48 31 38 20 28 29 34 1 0 28 0 3 9 28 31 67 50 47 14 chain 77514 chr5 180915260 + 129643216 129644089 L1PA4 6152 - 9 883 44579 361 0 1 512 chain 125078 chr5 180915260 + 129644089 129645484 L1P1 4361 + 2667 4068 29367 696 0 1 123 0 4 518 0 1 58 chain 53478 chr5 180915260 + 129652844 129653501 PABL_B 668 + 0 660 56699 281 1 0 5 0 9 55 1 0 128 6 0 112 0 2 68 chain 6293 chr5 180915260 + 129666945 129667022 MSTA-int 1630 + 1547 1624 182864 77 chain 15544 chr5 180915260 + 129693888 129694202 L1PA11 4918 + 4284 4578 139753 47 6 4 58 19 17 62 2 0 15 0 2 6 3 0 13 1 0 9 31 22 15 1 0 13 2 0 11 chain 6193 chr5 180915260 + 129721372 129721516 MER4D0 881 + 0 149 183638 46 1 0 17 51 57 29 chain 3575 chr5 180915260 + 129722334 129722372 U7 62 - 23 61 214043 38 chain 263354 chr5 180915260 + 129727387 129730693 L1PA7 6471 + 3156 6469 15515 232 0 4 91 19 14 365 0 1 82 0 1 94 14 11 267 0 2 165 0 1 66 1 0 4 8 9 106 0 4 53 0 1 219 3 1 295 5 6 117 0 1 253 1 0 97 0 3 415 0 1 182 3 4 136 3 0 10 chain 107250 chr5 180915260 + 129733363 129734880 THE1B-int 1605 + 15 1599 34899 258 0 6 122 17 82 264 15 0 7 2 12 66 30 31 339 32 31 62 7 4 77 1 5 218 chain 21725 chr5 180915260 + 129737823 129738120 AluSp 311 + 21 301 121301 201 18 1 78 chain 220383 chr5 180915260 + 129754534 129757410 L1PA8A 6298 + 3401 6290 17857 38 0 4 32 2 0 86 1 2 76 0 2 52 14 7 177 1 2 478 0 1 412 0 4 135 5 6 298 0 2 69 3 6 153 0 1 25 0 4 19 0 3 30 1 8 35 8 5 60 14 5 535 5 6 28 1 0 83 chain 19916 chr5 180915260 + 129765003 129765262 AluY 311 + 14 276 127409 41 0 1 75 6 8 137 chain 13317 chr5 180915260 + 129766337 129766575 L1MC1 2226 + 1823 2047 147017 19 7 5 7 1 0 33 11 7 15 7 5 66 3 0 15 2 0 52 chain 56784 chr5 180915260 + 129770581 129771199 L1PA3long 6157 - 18 636 54664 618 chain 5460 chr5 180915260 + 129771199 129771261 MER11D 897 + 835 897 190416 62 chain 7129 chr5 180915260 + 129771643 129771730 MSTB 430 + 0 87 176549 87 chain 149934 chr5 180915260 + 129781799 129783720 L1PA8 5853 + 3952 5853 24617 44 0 1 746 0 1 14 0 1 22 1 0 4 0 1 220 2 0 3 2 0 416 0 1 77 5 0 59 1 0 46 2 0 71 1 0 8 7 0 9 12 5 32 0 1 6 2 1 21 1 0 25 10 14 52 chain 23350 chr5 180915260 + 129786780 129787112 THE1A 353 - 17 353 113920 86 1 2 58 0 3 64 14 13 15 13 14 81 chain 114126 chr5 180915260 + 129794787 129796624 THE1B-int 1605 + 34 1599 33064 396 0 25 132 5 4 4 0 1 92 28 29 66 303 0 405 0 1 92 0 1 43 11 13 65 0 1 61 4 5 125 1 0 4 chain 29360 chr5 180915260 + 129836406 129836750 L1PA7 6471 - 7 348 87238 304 6 3 34 chain 6140 chr5 180915260 + 129840369 129840517 MER2 342 + 85 249 184072 15 1 7 6 1 0 27 48 59 50 chain 68923 chr5 180915260 + 129848343 129849142 L1PA7 6471 + 5653 6452 48849 799 chain 28602 chr5 180915260 + 129858176 129858504 L1PA5 6144 - 3301 3629 89605 328 chain 285708 chr5 180915260 + 129858504 129861831 L1PA5 6144 + 2849 6144 14305 315 48 1 36 0 1 51 0 2 224 4 7 697 0 7 1183 0 2 769 chain 44676 chr5 180915260 + 129868863 129869356 L1PA3long 6157 - 0 493 63404 493 chain 35667 chr5 180915260 + 129877378 129877840 LTR71A 459 - 0 459 75307 50 0 3 77 1 0 81 13 8 240 chain 37986 chr5 180915260 + 129885351 129885810 LTR71A 459 - 0 459 72153 459 chain 229329 chr5 180915260 + 129901117 129903713 L1PA5 6144 + 3535 6139 17333 147 1 0 1100 1 3 456 0 1 55 0 6 70 0 2 376 9 7 381 chain 29352 chr5 180915260 + 129905388 129905714 L1PA2 6032 - 4 336 87280 13 0 6 313 chain 328424 chr5 180915260 + 129915955 129920268 L1PA8A 6298 + 824 6288 12262 278 0 4 19 20 23 283 0 1 471 3 1 183 0 1 78 0 1 4 6 5 268 4 0 61 1 2 44 0 1 206 5 9 249 5 7 283 31 11 82 1 0 18 1 5 282 0 1 89 0 1 81 1 2 15 0 1 114 0 1 11 0 5 330 0 1 26 0 1 5 1 0 285 0 2 143 4 1 114 0 1148 106 9 8 93 chain 105787 chr5 180915260 + 129929049 129930328 L1PA7 6471 + 5186 6465 35308 86 4 6 213 4 1 60 1 0 69 1 0 518 0 1 168 7 8 52 0 1 96 chain 31086 chr5 180915260 + 129931598 129933208 MLT2A1 477 + 1 477 82373 127 0 1 40 4 1 9 0 1 24 1 2 188 7 0 10 1165 38 35 chain 403852 chr5 180915260 + 129943660 129948823 L1PA7 6471 + 1483 6461 9976 27 0 1 453 4 5 57 0 2 123 219 0 484 5 0 914 0 4 151 1 0 538 15 20 20 0 1 795 0 1 6 3 16 174 8 15 8 7 0 323 1 0 23 4 5 170 1 12 258 0 1 371 chain 16336 chr5 180915260 + 129953692 129953946 L1PA16 3655 - 133 389 137378 90 13 17 111 19 17 21 chain 281029 chr5 180915260 + 129955625 129958866 L1PA5 6144 + 2885 6130 14583 285 0 1 30 0 1 280 0 1 760 0 1 619 0 1 4 1 0 556 0 1 635 2 1 69 chain 29880 chr5 180915260 + 129962181 129962508 L1PA2 6032 - 331 658 85165 327 chain 31056 chr5 180915260 + 129962508 129962850 L1PA2 6032 + 5690 6032 82424 342 chain 16454 chr5 180915260 + 129963362 129964219 L1MA2 4263 - 149 3080 137051 10 1 0 23 1 0 5 25 18 92 1 0 8 1 0 29 528 2613 133 chain 115499 chr5 180915260 + 129964256 129965531 L1PA3long 6157 - 0 1278 32606 11 1 4 764 1 0 261 0 1 237 chain 56939 chr5 180915260 + 129969075 129969762 LTR12_ 688 + 0 688 54570 513 1 0 27 0 1 24 0 1 122 chain 382209 chr5 180915260 + 129969790 129974920 HERV9-int 5642 + 0 5642 10690 795 1 0 297 80 0 14 3 0 430 2 3 124 0 1 467 6 7 45 0 2 117 4 0 313 0 13 382 7 942 281 0 1 496 1 14 85 344 14 388 1 0 226 6 4 31 1 0 7 5 3 22 2 1 59 1 0 14 28 5 19 4 0 3 2 0 17 chain 55720 chr5 180915260 + 129977516 129978176 LTR12_ 688 + 1 687 55291 120 0 25 265 0 2 100 1 0 174 chain 2856 chr5 180915260 + 129984590 129984620 MER66D 528 + 0 30 227755 30 chain 5869 chr5 180915260 + 129991468 129991552 L1MB1 2102 - 109 191 186481 52 2 0 30 chain 38670 chr5 180915260 + 130000000 130000431 L1PA4 6152 + 5711 6143 71193 290 0 1 141 chain 18317 chr5 180915260 + 130000433 130000836 L1MA8 2339 - 94 450 132031 26 0 5 7 27 14 29 3 0 37 3 0 6 56 28 54 4 5 25 1 0 55 1 0 23 8 4 38 chain 63898 chr5 180915260 + 130000985 130001828 L1PA11 4918 - 1177 2033 51054 80 0 1 21 0 1 37 5 6 14 0 9 602 3 4 81 chain 13336 chr5 180915260 + 130010445 130010602 L1PA7 6471 + 5466 5621 146950 64 2 0 91 chain 71637 chr5 180915260 + 130010603 130011451 L1PA7 6471 + 5621 6468 47633 518 1 0 329 chain 171635 chr5 180915260 + 130038795 130040767 L1PA5 6144 + 4159 6130 21865 328 1 0 886 0 2 107 1 3 31 3 0 89 1 0 525 chain 11506 chr5 180915260 + 130059834 130059995 THE1D 372 - 230 372 154277 67 19 0 75 chain 553437 chr5 180915260 + 130067787 130073802 L1PA2 6032 + 1 6016 1011 6015 chain 19049 chr5 180915260 + 130074946 130075153 L1PA3long 6157 - 0 207 129977 207 chain 26244 chr5 180915260 + 130081530 130081877 THE1A 353 + 6 353 99039 75 0 2 28 1 0 91 1 0 27 0 1 4 2 1 118 chain 123708 chr5 180915260 + 130081877 130083434 THE1A-int 1579 + 0 1562 29807 282 0 2 166 0 1 220 15 16 512 1 0 42 7 6 260 2 5 50 chain 191823 chr5 180915260 + 130088551 130090991 L1PA3long 6157 - 8 2119 19879 953 329 0 1158 chain 29021 chr5 180915260 + 130089521 130089833 AluYf4 310 - 0 310 88905 184 2 0 126 chain 7473 chr5 180915260 + 130092463 130092545 L1PA4 6152 - 0 82 174322 82 chain 15671 chr5 180915260 + 130093424 130093605 L1P1 4361 - 1263 1444 139360 181 chain 43581 chr5 180915260 + 130093637 130094147 L1PA7 6471 + 5948 6461 64705 301 0 7 115 4 0 90 chain 18083 chr5 180915260 + 130100537 130100818 L1MA2 4263 - 205 482 132639 93 2 1 6 1 0 50 6 7 95 13 10 15 chain 22544 chr5 180915260 + 130115673 130116241 L1PB1 5432 + 4963 5420 117829 51 10 12 72 116 20 18 0 11 11 4 0 9 2 0 53 2 1 55 93 74 41 1 0 13 1 0 16 chain 5433 chr5 180915260 + 130117475 130117542 MER3 215 - 83 150 190674 67 chain 535633 chr5 180915260 + 130119183 130125350 L1PA4 6152 + 0 6144 3497 127 0 14 542 0 3 1421 0 3 293 44 2 2995 2 0 638 0 1 105 chain 534418 chr5 180915260 + 130153430 130159452 L1PA3long 6157 + 1 6156 3664 151 0 1 619 5 133 83 22 25 939 1 0 2519 0 1 1530 0 1 153 chain 42694 chr5 180915260 + 130169037 130169636 L1PA13 3608 - 120 710 65780 20 1 0 20 2 0 5 2 0 47 2 0 10 1 0 47 7 6 15 0 2 43 2 0 97 13 12 36 1 0 80 0 2 148 chain 159514 chr5 180915260 + 130176934 130180019 L1PA8 5853 - 6 2013 23397 87 1 0 16 1 0 52 1 0 11 12 11 62 2 0 23 0 1 20 1 0 255 2 0 300 12 11 7 0 4 62 0 1 124 0 1 116 0 2 129 1082 0 175 7 9 501 0 3 24 chain 81923 chr5 180915260 + 130178236 130179282 MER11C 1089 + 0 1056 42796 250 0 1 62 0 4 69 1 0 146 65 66 92 0 4 5 1 0 38 0 1 127 0 1 190 chain 23936 chr5 180915260 + 130204693 130205020 THE1A 353 - 24 353 110716 11 6 8 110 1 0 17 3 4 69 2 1 90 0 1 18 chain 189937 chr5 180915260 + 130208424 130210498 L1PA3long 6157 + 4082 6157 20057 1625 0 1 449 chain 121434 chr5 180915260 + 130213402 130214979 THE1B-int 1605 + 0 1600 30554 428 3 28 179 21 28 243 0 3 238 29 3 13 0 14 423 chain 25278 chr5 180915260 + 130214984 130215331 THE1B 368 + 0 357 103328 44 0 6 6 0 9 229 11 7 12 1 0 44 chain 3280 chr5 180915260 + 130218878 130218914 MLT2D 439 - 0 36 219354 36 chain 15528 chr5 180915260 + 130224220 130224448 MER2 342 - 5 210 139803 102 1 0 95 22 0 8 chain 80337 chr5 180915260 + 130229571 130233244 L1PA6 6164 + 626 5284 17119 522 11 12 286 1 0 22 1 11 98 18 0 151 1 0 484 4 0 113 0 1 70 8 0 26 1444 2448 110 0 1 303 chain 58392 chr5 180915260 + 130231387 130232095 L1PA6 6164 + 5469 6162 53752 60 19 4 629 chain 542781 chr5 180915260 + 130233259 130239362 L1PA3long 6157 + 10 6157 2379 116 0 14 140 0 1 232 0 1 474 15 17 442 1 0 523 0 1 1073 0 1 1698 1 24 332 0 1 992 0 1 64 chain 19073 chr5 180915260 + 130239373 130240245 L1PA6 6164 + 5284 6161 17119 26 5 9 235 0 1 109 1 0 40 0 2 5 2 0 205 11 13 64 1 0 168 chain 61441 chr5 180915260 + 130241114 130241780 L1PA3long 6157 - 124 789 52136 291 1 0 374 chain 11113 chr5 180915260 + 130241780 130241903 L1PA3long 6157 + 6034 6157 155767 123 chain 4328 chr5 180915260 + 130246825 130246931 L1MDb 1215 + 980 1084 202852 31 39 37 36 chain 39331 chr5 180915260 + 130253998 130254480 L1PA7 6471 + 5983 6467 70281 229 0 1 180 4 5 69 chain 427874 chr5 180915260 + 130260319 130265388 L1PA6 6164 + 823 6162 9354 265 1 4 354 1 0 203 0 277 95 39 7 305 0 1 122 0 1 343 0 4 335 0 2 48 0 1 1544 8 24 290 6 1 263 0 4 362 0 2 379 1 2 95 4 0 6 chain 437169 chr5 180915260 + 130265394 130270848 L1PA8A 6298 + 828 6290 9120 272 0 1 9 0 1 11 0 12 19 0 4 65 11 10 34 0 1 5 2 0 96 1 0 254 1 0 141 0 12 236 1 0 494 4 5 251 42 14 929 0 1 145 1 0 4 2 3 21 0 1 197 7 8 60 0 2 679 1 0 151 1 0 462 0 1 30 0 4 20 4 0 101 10 16 680 chain 19296 chr5 180915260 + 130285149 130285423 L1PB 1623 + 1179 1453 129252 109 5 9 9 4 1 139 1 0 7 chain 9280 chr5 180915260 + 130288136 130288246 MER41C 542 - 0 110 164169 110 chain 162868 chr5 180915260 + 130292401 130298305 L1PA14 3548 - 92 2511 22956 42 1 0 18 1 0 9 17 14 31 5 1 9 1 0 111 6 8 76 1 0 6 2 0 13 8 4 38 2679 0 71 2 0 4 2 0 48 19 15 179 1 26 105 0 3 38 5 4 46 1 0 34 0 3 195 1 0 5 0 1 19 0 4 91 12 0 215 2 0 97 5 33 36 58 1 188 1 0 27 21 6 69 767 9 4 1 0 40 3 4 376 0 1 42 chain 24275 chr5 180915260 + 130294789 130295100 THE1D-int 1627 + 1312 1620 108814 60 1 0 83 3 1 164 chain 17236 chr5 180915260 + 130295107 130295475 THE1D 372 + 0 372 134964 70 19 20 55 39 46 7 4 0 12 42 43 81 6 5 33 chain 63536 chr5 180915260 + 130297118 130297838 L1PA4 6152 - 37 744 51230 494 13 0 213 chain 28052 chr5 180915260 + 130303850 130304170 L1PA7 6471 - 10 331 92816 218 0 1 102 chain 26187 chr5 180915260 + 130315172 130315494 THE1C 375 - 34 357 99254 155 1 2 166 chain 29900 chr5 180915260 + 130333059 130333375 AluYb8 318 - 2 318 85099 316 chain 41715 chr5 180915260 + 130340173 130340827 L1PB2 3958 + 3185 3838 67009 59 0 1 43 0 2 19 2 0 54 1 0 11 5 0 48 18 16 13 6 0 94 6 5 67 1 0 20 9 17 50 0 4 14 0 4 20 1 2 4 2 0 23 8 7 56 chain 11067 chr5 180915260 + 130343878 130344073 L1MA3 4352 + 104 296 155936 5 2 0 47 1 0 14 6 5 33 19 20 68 chain 379819 chr5 180915260 + 130349871 130355216 L1PB1 5432 - 12 5413 10758 13 9 8 8 1 0 21 1 0 11 27 0 8 10 32 23 13 0 16 1 0 43 1 0 67 3 1 11 5 1 11 1 0 12 1 0 17 154 0 11 0 3 167 6 9 120 0 2 179 3 0 58 0 4 130 1 2 213 2 1 184 25 24 11 3 4 28 4 5 49 0 1 5 9 192 32 0 12 68 3 1 401 0 2 264 15 16 77 1 0 33 0 1 81 0 1 32 10 24 81 0 3 73 0 5 13 5 0 117 0 4 164 0 4 371 0 1 115 0 2 202 5 6 103 20 7 439 5 10 68 7 8 570 3 14 219 2 1 16 7 8 27 chain 536183 chr5 180915260 + 130364420 130370550 L1PA4 6152 - 9 6151 3422 42 0 1 4 1 0 91 1 0 6 1 3 842 0 5 23 2 0 1826 0 1 991 0 1 821 0 1 239 1 0 24 0 1 502 0 1 180 0 4 533 chain 208238 chr5 180915260 + 130379004 130383941 L1PA8 5853 + 2511 5391 18622 55 9 16 288 4 1 11 1 0 32 1 0 5 0 5 8 5 1 30 0 4 109 0 1 175 0 1 29 0 4 85 23 21 204 2 0 11 0 3 13 1 0 26 16 19 40 0 4 6 0 2 18 1 0 83 0 1 202 1 3 86 0 3 76 0 5 67 2109 0 684 8 27 26 6 8 84 15 16 282 chain 9072 chr5 180915260 + 130380732 130380841 THE1A 353 - 0 109 165208 109 chain 126812 chr5 180915260 + 130380916 130382479 THE1A-int 1579 - 0 1579 28857 70 0 15 908 6 7 579 chain 233132 chr5 180915260 + 130385386 130388104 L1PA4 6152 + 3456 6152 17133 989 23 0 84 0 1 173 0 1 1334 0 1 108 2 0 5 chain 100502 chr5 180915260 + 130408901 130409982 L1PA2 6032 - 0 1081 36627 1081 chain 8250 chr5 180915260 + 130409982 130410077 L1P1 4361 + 4234 4328 169186 71 1 0 23 chain 546583 chr5 180915260 + 130422847 130429008 L1PA4 6152 + 0 6151 1871 736 1 0 189 0 4 1508 0 4 1250 4 0 71 0 1 1040 0 1 131 0 4 1058 20 1 153 chain 77625 chr5 180915260 + 130431119 130432076 L1PA8 5853 - 0 954 44683 6 1 0 87 1 0 19 2 1 58 1 0 74 2 0 44 1 0 480 0 2 73 1 3 107 chain 489176 chr5 180915260 + 130452558 130460091 L1PA6 6164 - 4 6129 7400 8 3 0 181 13 16 312 6 15 74 0 3 54 3 17 157 1 5 283 1 0 721 13 0 297 1 3 744 0 6 74 0 1 475 0 2 122 1 8 68 0 1 187 0 1 347 1 0 115 327 0 19 1 0 59 1 0 108 0 2 851 0 17 183 2 13 41 4 3 117 19 0 355 1124 0 60 chain 90044 chr5 180915260 + 130458913 130460031 MER11A 1151 + 0 1151 39636 107 1 3 66 8 0 52 1 0 63 0 2 95 0 1 70 0 1 357 12 46 54 0 1 53 0 1 179 chain 74499 chr5 180915260 + 130460630 130461750 L1PREC2 3366 + 1848 2963 46277 66 0 11 48 0 2 62 3 0 114 3 4 94 0 1 137 1 0 205 4 5 108 0 7 36 6 4 54 2 1 18 6 7 18 1 0 4 3 0 13 29 21 15 16 11 8 2 0 22 11 8 11 chain 99397 chr5 180915260 + 130463684 130464856 L1PA5 6144 + 4696 6144 36926 71 7 23 489 3 263 602 chain 5355 chr5 180915260 + 130467835 130467942 MER63D 473 + 1 108 191488 14 24 23 39 1 2 29 chain 530566 chr5 180915260 + 130468630 130474702 L1PA4 6152 - 9 6118 4128 1205 0 2 149 1 2 1103 1 0 1109 0 4 1111 12 20 617 6 9 45 0 1 190 1 0 336 0 20 186 chain 5729 chr5 180915260 + 130474712 130474791 L1MB2 1706 + 1583 1660 187847 15 1 0 13 1 0 49 chain 21749 chr5 180915260 + 130479455 130479729 L1PA7 6471 + 6179 6467 121212 118 8 21 63 0 1 85 chain 48523 chr5 180915260 + 130480552 130481121 L1PA6 6164 + 5432 6007 60089 400 7 6 119 0 7 43 chain 12827 chr5 180915260 + 130481121 130481275 L1PA6 6164 + 6010 6162 148944 51 0 1 92 3 0 8 chain 20908 chr5 180915260 + 130486826 130487273 LTR35 598 + 49 495 124250 39 26 35 12 26 16 44 12 17 51 3 0 58 48 49 64 4 0 16 7 8 37 chain 5157 chr5 180915260 + 130519962 130520033 Charlie1a 1436 - 332 403 193480 11 0 1 4 1 0 55 chain 23553 chr5 180915260 + 130524853 130525164 AluY 311 + 0 309 112830 18 1 0 114 0 1 10 3 0 7 9 12 120 2 0 27 chain 13628 chr5 180915260 + 130543306 130543485 MER4A1 472 - 291 472 145868 151 13 15 15 chain 12729 chr5 180915260 + 130556884 130557109 MER30 238 + 0 238 149336 27 20 21 59 4 19 27 1 7 5 6 0 28 3 0 45 chain 5156 chr5 180915260 + 130570923 130570985 MLT2B2 565 - 435 497 193489 62 chain 4818 chr5 180915260 + 130573840 130573904 L1PA8 5853 + 5697 5760 197139 43 2 1 19 chain 20929 chr5 180915260 + 130573919 130574178 AluY 311 + 11 265 124177 111 10 5 138 chain 21690 chr5 180915260 + 130574585 130574872 AluSg 306 + 17 300 121431 182 16 12 89 chain 23849 chr5 180915260 + 130578990 130579286 AluY 311 + 0 290 111186 95 11 4 33 0 1 157 chain 13745 chr5 180915260 + 130589735 130589892 L1PA6 6164 - 5 161 145451 152 1 0 4 chain 23766 chr5 180915260 + 130604144 130604434 AluSp 311 - 11 301 111673 290 chain 24223 chr5 180915260 + 130619191 130619485 AluSp 311 - 17 311 109071 294 chain 525397 chr5 180915260 + 130642761 130648654 L1PA3long 6157 - 0 6153 4644 1007 0 123 2633 0 4 203 0 2 237 1 0 706 1 0 333 0 128 199 0 4 425 0 1 148 chain 539301 chr5 180915260 + 130667663 130673796 L1PA4 6152 - 1 6152 2928 4 0 1 1077 1 2 306 0 1 408 0 4 710 2 1 433 1 0 709 1 0 648 2 0 603 0 1 98 0 2 393 1 0 609 0 14 127 chain 2499 chr5 180915260 + 130674272 130674393 MIR 256 - 46 173 233140 9 0 6 6 2 0 20 66 68 18 chain 462409 chr5 180915260 + 130679744 130685184 L1PA5 6144 + 4 6135 8307 117 0 14 21 0 12 35 0 1 4 1 0 86 0 1 571 0 2 120 0 1 39 1 2 4 1 0 136 9 0 92 0 1 145 1 6 592 3 0 944 0 6 241 1 0 683 0 3 66 8 10 382 0 4 460 0 2 335 3 650 161 0 4 178 chain 25461 chr5 180915260 + 130717005 130717305 AluSq10 312 - 0 302 102411 33 0 1 118 0 1 149 chain 13240 chr5 180915260 + 130734645 130734825 MSTA 426 - 12 238 147321 124 0 50 34 4 0 18 chain 41204 chr5 180915260 + 130745060 130746363 L1MA1 4479 + 3482 4151 67643 38 3 0 41 0 1 4 1 0 108 1 3 32 10 9 21 2 0 16 1 0 8 0 5 58 13 14 19 1 0 88 9 5 59 636 20 16 11 0 31 1 0 29 2 0 44 chain 17363 chr5 180915260 + 130757112 130757370 AluY 311 + 30 281 134617 93 13 5 16 3 0 6 0 3 83 16 17 28 chain 23738 chr5 180915260 + 130764154 130764443 AluSp 311 - 13 300 111845 173 2 0 114 chain 3663 chr5 180915260 + 130787403 130787447 MADE1 96 - 52 96 212523 44 chain 50387 chr5 180915260 + 130822717 130823426 LTR12 884 - 0 884 58724 59 17 16 53 0 8 18 0 103 227 0 22 27 1 0 13 0 1 21 0 42 85 0 1 44 0 25 37 25 0 14 0 1 42 1 0 25 chain 5317 chr5 180915260 + 130873842 130873908 MER2 342 + 140 206 191846 66 chain 1742 chr5 180915260 + 130915179 130915221 LTR12C 1709 - 991 1033 203598 42 chain 8984 chr5 180915260 + 130915265 130915640 LTR12C 1709 - 600 937 165697 17 15 0 7 1 176 50 80 2 20 79 0 35 41 0 30 chain 3928 chr5 180915260 + 130915355 130915423 LTR12C 1709 - 890 943 195502 46 15 0 7 chain 33208 chr5 180915260 + 130921070 130921810 MER4A1 472 + 27 472 78867 148 320 4 56 1 22 215 chain 23257 chr5 180915260 + 130927553 130927848 AluSp 311 - 20 311 114405 9 5 0 163 0 1 118 chain 8461 chr5 180915260 + 130941097 130941195 L1PA5 6144 + 6045 6143 168504 98 chain 4504 chr5 180915260 + 130945310 130945360 ERV3-16A3_I-int 1541 + 1032 1082 200743 50 chain 19935 chr5 180915260 + 130954880 130955170 L1PA7 6471 + 6183 6465 127344 124 20 8 7 0 10 14 3 0 113 3 0 6 chain 4111 chr5 180915260 + 130956916 130956968 MER2 342 - 72 124 205756 52 chain 5261 chr5 180915260 + 131052530 131052669 MER58A 224 + 39 180 192403 58 62 64 19 chain 37197 chr5 180915260 + 131052685 131053113 L1PA4 6152 - 0 432 73239 13 0 3 97 0 1 318 chain 472996 chr5 180915260 + 131059409 131065265 L1PA7 6471 - 7 6471 7946 15 2 1 124 1 0 98 5 6 457 2 1 52 1 0 8 0 2 79 1 4 19 0 1 123 0 5 666 0 1 122 0 4 451 0 3 386 1 0 150 11 24 29 9 25 55 0 4 288 1 15 84 0 1 417 18 0 48 13 2 53 0 1 312 0 1 185 1 0 20 0 1 456 2 1 168 0 3 6 8 3 127 6 7 11 0 1 673 0 573 92 chain 178882 chr5 180915260 + 131068080 131070102 L1PA5 6144 - 1057 3084 21085 308 0 1 543 0 1 987 0 4 147 6 5 31 chain 91987 chr5 180915260 + 131070102 131071148 L1PA5 6144 + 5082 6130 38947 212 1 0 142 0 3 691 chain 39297 chr5 180915260 + 131076373 131076911 MER41A 554 + 12 554 70334 149 1 0 4 4 5 112 1 0 32 1 0 113 0 1 41 7 12 73 chain 16889 chr5 180915260 + 131085387 131085603 Tigger3b 1229 + 942 1158 135868 150 1 0 39 0 1 26 chain 14665 chr5 180915260 + 131106633 131106823 L1PA3long 6157 - 0 197 142373 129 9 16 52 chain 74150 chr5 180915260 + 131114049 131114852 L1PA2 6032 + 5229 6032 46430 803 chain 6294 chr5 180915260 + 131117874 131117959 Tigger1 2417 + 1466 1550 182854 35 1 0 49 chain 22648 chr5 180915260 + 131145227 131145524 AluSc5 308 + 8 297 117336 89 0 1 130 1 9 48 17 0 12 chain 29703 chr5 180915260 + 131155458 131155767 AluYa5 310 - 1 310 85819 309 chain 11195 chr5 180915260 + 131165312 131165666 MLT1C 463 + 0 439 155440 20 9 7 89 138 226 21 21 23 28 3 0 25 chain 27747 chr5 180915260 + 131167343 131167692 THE1A 353 - 0 353 93875 165 2 1 77 1 0 25 0 1 44 0 5 35 chain 116644 chr5 180915260 + 131167692 131169218 THE1A-int 1579 - 0 1537 32249 93 0 7 77 0 1 149 6 4 296 15 25 128 0 1 334 1 0 7 2 3 11 7 9 150 8 0 242 chain 4916 chr5 180915260 + 131169218 131169281 THE1A 353 - 61 123 194396 58 1 0 4 chain 18133 chr5 180915260 + 131169281 131169513 THE1A 353 - 124 353 132512 119 2 1 39 2 0 70 chain 4967 chr5 180915260 + 131185318 131185371 MSTA 426 + 355 408 195508 53 chain 546029 chr5 180915260 + 131206712 131212849 L1PA4 6152 + 6 6151 1942 365 0 2 207 1 0 2114 0 5 472 1 0 337 1 2 261 0 1 131 0 1 2104 1 0 114 6 7 22 chain 35826 chr5 180915260 + 131222505 131223384 L1PA6 6164 - 3 860 6882 63 0 4 76 30 0 35 0 1 276 10 1 169 0 4 194 14 22 12 chain 531238 chr5 180915260 + 131223403 131229431 L1PA4 6152 - 1 6151 4052 143 1 0 2283 1 13 296 17 1 1157 0 2 756 0 1 751 0 124 623 chain 216872 chr5 180915260 + 131229432 131234753 L1PA6 6164 - 860 6164 6882 113 21 0 1173 11 23 660 0 2 141 0 2 400 0 1 198 5 9 253 3 4 161 1 0 483 12 9 185 6 4 12 3 0 5 11 15 218 23 10 1223 chain 9124 chr5 180915260 + 131238234 131238348 MSTA 426 + 311 426 164947 105 0 1 9 chain 47379 chr5 180915260 + 131240263 131240822 L1PA7 6471 + 5889 6459 60914 348 6 12 144 0 5 61 chain 34432 chr5 180915260 + 131240844 131241387 L1PA15 4387 + 1376 1933 77016 19 2 0 5 0 1 123 0 1 149 75 86 19 0 4 9 1 0 141 chain 5240 chr5 180915260 + 131250319 131250393 MSTC 436 + 366 436 192617 17 4 0 53 chain 28137 chr5 180915260 + 131263556 131263856 AluYg6 310 + 0 300 92518 300 chain 31368 chr5 180915260 + 131265573 131266230 L1PA15 4387 - 71 754 81876 46 6 3 42 13 12 8 4 0 13 61 73 15 2 1 40 13 0 31 17 19 81 36 69 26 8 7 11 13 15 171 chain 29099 chr5 180915260 + 131317829 131318133 AluYa5 310 - 4 308 88559 304 chain 233497 chr5 180915260 + 131374780 131378181 L1PA13 3608 - 122 3518 17118 13 6 5 16 12 8 48 12 5 56 3 2 60 2 0 64 0 2 22 5 8 17 1 0 28 1 0 660 2 1 56 3 2 66 9 11 95 1 0 36 5 6 302 3 1 142 12 24 44 6 19 356 2 1 131 2 0 132 0 2 19 1 0 154 0 1 185 16 23 32 2 0 96 0 8 8 5 6 15 2 0 17 1 0 15 9 5 16 2 0 16 3 2 10 2 1 120 12 10 68 66 55 25 3 0 16 15 13 19 chain 15350 chr5 180915260 + 131433676 131433883 MER30 238 - 0 238 140338 78 1 7 27 1 26 100 chain 233426 chr5 180915260 + 131442391 131445027 L1PA4 6152 + 3344 5995 17121 1369 0 1 568 0 4 15 1 8 75 0 1 22 0 1 570 1 2 15 chain 13243 chr5 180915260 + 131445027 131445174 L1PA4 6152 + 5996 6143 147311 147 chain 507909 chr5 180915260 + 131452173 131458531 L1PA7 6471 + 5 6467 6330 155 1 2 73 8 9 65 1 14 52 15 16 21 2 0 502 2 5 175 2 5 136 3 49 109 0 3 213 0 4 645 4 5 42 0 1 192 0 2 139 0 2 175 0 1 19 1 0 131 0 3 141 1 0 169 0 1 111 0 3 247 0 1 4 0 36 18 21 4 293 18 10 430 4 1 333 0 3 99 0 1 211 0 3 532 1 3 140 1 0 257 12 11 111 0 6 49 2 1 259 2 0 9 chain 443228 chr5 180915260 + 131459151 131464849 L1PA8 5853 - 0 5745 8946 93 1 0 19 8 7 46 14 12 68 2 0 44 1 0 78 0 18 94 0 3 193 8 9 59 4 6 46 0 1 39 15 14 256 1 0 81 0 8 77 0 4 185 0 4 55 0 1 378 9 10 70 0 2 94 3 2 537 1 0 243 0 1 29 0 2 45 10 1 31 0 1 99 0 1 260 8 20 22 0 4 449 6 7 381 0 1 360 0 3 205 18 22 35 0 1 76 1 2 283 0 1 6 1 4 13 3 0 168 0 1 79 0 1 70 25 13 28 5 4 14 15 16 8 1 0 122 chain 11010 chr5 180915260 + 131466628 131466750 L1PA7 6471 - 4 126 156174 122 chain 14201 chr5 180915260 + 131471079 131471232 L1PA4 6152 + 5745 5898 143876 153 chain 12219 chr5 180915260 + 131471233 131471373 L1PA4 6152 + 5898 6038 151345 140 chain 9479 chr5 180915260 + 131471373 131471477 L1PA4 6152 + 6039 6143 163161 104 chain 108384 chr5 180915260 + 131474920 131476603 L1PB1 5432 + 3761 5422 34597 271 0 1 68 4 3 211 0 2 80 9 7 36 9 6 27 0 5 145 1 2 82 3 1 171 46 0 156 18 75 4 1 0 24 9 6 13 6 2 9 2 0 52 22 20 25 0 1 13 95 75 19 1 0 18 1 0 13 1 0 18 chain 71036 chr5 180915260 + 131480888 131481712 L1PA6 6164 - 3 825 47911 127 3 0 202 1 0 181 1 0 32 0 3 277 chain 520009 chr5 180915260 + 131486801 131493484 L1PA7 6471 - 14 6466 5162 147 21 22 224 5 0 440 0 3 394 0 1 548 0 4 105 335 0 1016 0 4 50 10 4 258 4 8 370 1 0 71 0 1 148 1 2 499 0 1 33 0 2 438 0 1 108 1 0 207 1 2 27 0 1 193 0 8 491 57 36 186 0 1 69 1 2 55 9 83 21 4 7 30 1 27 104 chain 342841 chr5 180915260 + 131494461 131498212 L1PA3long 6157 + 2405 6157 11813 492 0 1 3259 chain 24598 chr5 180915260 + 131500386 131500663 AluSq10 312 + 10 287 107007 277 chain 3666 chr5 180915260 + 131516472 131516514 tRNA-Cys-TGY 72 + 1 43 212467 42 chain 2946 chr5 180915260 + 131527225 131527264 MLT1A0 366 - 317 354 226219 20 2 0 17 chain 23729 chr5 180915260 + 131621221 131621494 AluSc 308 - 35 308 111884 273 chain 24244 chr5 180915260 + 131623888 131624173 AluSg7 307 - 11 297 108971 164 0 1 121 chain 17908 chr5 180915260 + 131661923 131662195 MER47A 366 - 93 366 133086 174 7 3 31 19 24 41 chain 88547 chr5 180915260 + 131673784 131674847 MER11B 1079 - 20 1079 40169 177 0 1 109 6 0 177 7 6 330 3 0 29 0 5 225 chain 3322 chr5 180915260 + 131680392 131680634 MER21C 908 - 348 637 218536 35 187 234 20 chain 334034 chr5 180915260 + 131681257 131685595 L1P2 5180 - 1130 5178 12054 350 311 1 4 1 0 82 0 1 43 0 2 246 0 3 5 3 0 130 1 0 4 0 3 126 0 1 1137 0 4 414 0 1 59 0 5 49 0 6 525 0 1 55 1 0 6 1 0 69 0 3 184 14 0 7 6 20 42 7 6 172 3 4 37 1 0 49 1 0 44 1 0 148 chain 28894 chr5 180915260 + 131681612 131681918 AluYb8 318 - 13 318 89482 179 1 0 126 chain 3617 chr5 180915260 + 131688478 131688756 L2a 937 + 182 534 213386 24 214 288 40 chain 24058 chr5 180915260 + 131688860 131689159 AluSc5 308 - 10 297 109997 167 10 0 8 1 0 13 1 0 99 chain 465135 chr5 180915260 + 131733540 131740239 L1PA6 6164 + 17 6150 8215 182 10 11 106 565 287 85 0 3 5 3 0 47 22 1 44 5 22 121 0 4 21 6 0 94 0 1 4 1 0 106 1 7 25 5 6 124 73 95 420 7 0 141 0 1 279 22 20 46 0 5 31 1 0 659 0 1 169 2 1 1177 0 4 518 10 0 133 336 15 12 0 1 270 1 15 121 0 3 405 0 1 284 chain 37637 chr5 180915260 + 131780226 131780771 MER4B 649 - 21 613 72641 64 1 0 75 0 1 58 6 0 11 9 7 20 1 0 36 13 18 126 4 55 121 chain 4161 chr5 180915260 + 131796986 131797039 L1MB2 1706 + 1638 1694 205079 24 0 3 29 chain 7961 chr5 180915260 + 131803847 131803946 HY1 111 + 9 110 171271 25 1 3 73 chain 559248 chr5 180915260 + 131849656 131855688 L1PA2 6032 + 0 6028 402 6021 4 0 7 chain 20138 chr5 180915260 + 131860576 131860954 THE1C 375 + 0 375 126719 19 2 0 41 8 12 6 4 0 24 6 7 74 50 50 10 6 0 16 0 4 112 chain 7010 chr5 180915260 + 131890931 131891023 L1MB3 1562 + 1283 1377 177392 32 0 3 33 1 0 26 chain 17833 chr5 180915260 + 131899446 131899772 MSTA 426 + 26 405 133293 82 24 52 46 4 0 6 43 45 39 0 20 55 1 8 26 chain 37723 chr5 180915260 + 131919790 131920218 L1PA5 6144 - 587 1016 72523 89 0 1 339 chain 50967 chr5 180915260 + 131920218 131920799 L1PA5 6144 + 5565 6142 58331 381 4 0 196 chain 83074 chr5 180915260 + 131927856 131929113 HSMAR2 1300 - 5 1299 42300 44 5 7 42 12 14 80 8 11 28 1 0 13 11 14 55 3 4 316 11 8 49 11 22 26 33 32 114 13 12 206 8 29 102 1 2 26 2 1 37 chain 38658 chr5 180915260 + 131937358 131937819 L1PA7 6471 + 6000 6458 71216 118 1 0 179 3 1 160 chain 91618 chr5 180915260 + 131941373 131942498 L1P3 4156 + 3005 4139 39087 59 0 1 410 0 4 15 1 0 52 0 4 150 0 4 403 2 0 9 9 8 15 chain 28671 chr5 180915260 + 131960778 131961077 AluYa5 310 - 11 310 90445 299 chain 13644 chr5 180915260 + 131961862 131962084 L1MA3 4352 - 484 705 145799 105 42 41 75 chain 14342 chr5 180915260 + 131966443 131966629 MER107 203 + 2 203 143411 106 0 1 37 1 6 18 0 9 24 chain 151913 chr5 180915260 + 132058783 132060495 L1PA5 6144 + 4424 6144 24349 648 0 1 410 0 3 198 9 13 447 chain 48364 chr5 180915260 + 132138892 132139470 L1P1 4361 - 1034 1621 60149 4 0 1 207 0 8 367 chain 227053 chr5 180915260 + 132139470 132142057 L1PA6 6164 + 3563 6162 17485 94 1 0 84 1 0 559 0 2 244 0 1 546 0 1 137 0 1 61 0 5 14 0 4 837 0 1 4 1 0 4 chain 3470 chr5 180915260 + 132142308 132142347 LTR54 533 + 425 464 215810 39 chain 7750 chr5 180915260 + 132184268 132184358 5S 121 + 0 90 172604 90 chain 4783 chr5 180915260 + 132204152 132204340 MER30 238 - 0 238 197537 27 0 27 26 5 6 14 2 0 6 4 0 8 81 109 15 chain 22791 chr5 180915260 + 132240497 132240758 AluSc 308 + 37 297 116625 168 1 0 92 chain 5277 chr5 180915260 + 132251573 132251659 LTR26E 604 + 122 205 192241 59 14 11 13 chain 25415 chr5 180915260 + 132252605 132252910 AluSp 311 - 5 311 102614 161 1 2 143 chain 22691 chr5 180915260 + 132275301 132275592 AluSq10 312 - 11 299 117123 211 5 2 75 chain 23729 chr5 180915260 + 132278152 132278454 AluSp 311 - 9 311 111885 20 2 1 243 0 1 37 chain 28622 chr5 180915260 + 132290238 132290538 AluYa5 310 - 10 310 90647 300 chain 4118 chr5 180915260 + 132312674 132312816 Cheshire 1285 - 1135 1278 205679 19 59 58 40 11 13 13 chain 143175 chr5 180915260 + 132318085 132319679 SVA_D 2077 - 0 2077 25623 622 1 0 49 1 490 882 6 3 15 2 0 16 chain 26966 chr5 180915260 + 132321803 132322112 AluYk4 311 - 2 311 96384 309 chain 7157 chr5 180915260 + 132328813 132328892 HY3 101 - 22 101 176360 79 chain 6752 chr5 180915260 + 132351644 132351865 L1MC4 1079 - 784 1004 179305 26 19 22 67 92 88 17 chain 12885 chr5 180915260 + 132357812 132358004 Tigger3b 1229 - 532 745 148686 25 2 7 18 0 1 60 2 13 42 0 4 43 chain 24489 chr5 180915260 + 132376064 132376356 AluSp 311 + 1 297 107602 52 1 5 239 chain 23922 chr5 180915260 + 132378638 132379021 MLT2A1 477 - 94 477 110798 210 7 11 13 23 0 8 6 22 5 1 0 50 1 3 11 6 8 42 chain 11831 chr5 180915260 + 132383477 132383813 LTR12D 1347 + 584 752 152902 109 181 13 46 chain 26094 chr5 180915260 + 132409964 132410268 AluSp 311 - 9 310 99648 8 3 0 293 chain 9233 chr5 180915260 + 132420942 132421056 L1MC2 1988 + 1525 1639 164380 114 chain 5318 chr5 180915260 + 132433842 132433947 L1PB3 3668 - 80 176 191835 7 2 0 12 9 5 35 3 2 23 2 0 12 chain 7953 chr5 180915260 + 132444510 132444624 SVA_F 1814 + 1096 1208 145206 73 37 35 4 chain 79046 chr5 180915260 + 132444624 132445486 SVA_F 1814 + 672 1814 44031 57 0 233 49 1 0 127 0 48 628 chain 3831 chr5 180915260 + 132447396 132447439 MER5A1 166 - 34 77 209921 43 chain 396867 chr5 180915260 + 132468812 132473227 L1PA4 6152 - 6 4427 10207 737 0 1 466 1 2 309 1 0 1922 5 10 974 chain 23775 chr5 180915260 + 132479916 132480291 THE1B 368 + 0 368 111626 15 2 0 32 0 1 60 3 7 6 2 0 48 31 24 94 7 6 75 chain 38843 chr5 180915260 + 132482646 132483164 MER41A 554 + 2 529 70959 85 5 6 55 0 1 35 5 6 4 1 0 269 2 9 57 chain 495998 chr5 180915260 + 132516411 132521914 L1PA3long 6157 - 5 6157 7071 807 6 0 2651 1 2 1783 0 128 159 0 526 96 chain 102828 chr5 180915260 + 132574585 132575992 LTR12C 1709 + 84 1709 36046 94 0 4 95 7 0 8 2 11 42 0 43 83 2 0 9 15 0 246 0 118 271 1 0 8 4 2 28 1 0 62 24 0 16 11 4 129 0 3 79 0 101 81 5 4 84 chain 3462 chr5 180915260 + 132664903 132664948 MER20B 722 + 1 45 215967 14 1 0 30 chain 31018 chr5 180915260 + 132665041 132665506 MLT2A1 477 - 0 477 82482 20 1 0 14 15 5 16 0 42 17 32 7 165 0 1 17 0 4 26 0 1 142 chain 33280 chr5 180915260 + 132680923 132681312 L1PA8 5853 - 803 1194 78486 41 0 2 348 chain 63595 chr5 180915260 + 132681312 132682100 L1PA8 5853 + 5071 5853 51187 122 0 3 172 2 0 194 1 0 48 2 0 70 1 0 8 1 0 52 2 1 19 1 0 93 chain 4790 chr5 180915260 + 132730516 132730977 LTR12C 1709 + 776 1542 197469 14 26 26 21 1 0 15 119 0 25 217 642 23 chain 2990 chr5 180915260 + 132730595 132730634 LTR12C 1709 + 814 852 225231 23 1 0 15 chain 26636 chr5 180915260 + 132801960 132802251 AluYk4 311 + 8 299 97528 291 chain 5350 chr5 180915260 + 132806821 132806892 MER96B 391 - 235 306 191548 27 1 0 18 0 1 25 chain 20985 chr5 180915260 + 132818650 132818985 THE1B 368 + 0 339 123972 55 8 9 82 6 4 19 1 0 26 0 5 9 1 5 16 1 0 12 9 8 58 1 0 31 chain 3472 chr5 180915260 + 132838703 132838745 MLT1E2 623 + 581 623 215786 42 chain 3782 chr5 180915260 + 132869249 132869300 MLT1D 503 + 449 499 210638 46 1 0 4 chain 41880 chr5 180915260 + 132870928 132871419 MER9a1 513 + 0 513 66791 249 0 22 242 chain 25137 chr5 180915260 + 132905620 132905914 AluY 311 + 2 299 104084 130 0 1 131 0 2 33 chain 564822 chr5 180915260 + 132918979 132924990 L1HS 6032 + 3 6032 215 150 0 2 582 0 16 5279 chain 33781 chr5 180915260 + 132956497 132957428 L1PB1 5432 + 4841 5417 77968 109 7 15 137 17 15 21 355 20 9 2 0 53 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 11 8 11 2 0 24 1 0 21 1 0 11 1 0 11 1 0 4 chain 274928 chr5 180915260 + 132963662 132967849 L1PA7 6471 + 3148 6469 14929 45 0 17 293 351 9 47 1 0 53 546 7 1055 0 4 276 4 7 152 1 3 140 13 5 87 1 0 276 1 0 74 0 1 616 0 1 145 2 0 8 chain 3509 chr5 180915260 + 132972243 132972346 MIR 256 + 98 200 215215 22 52 51 29 chain 13240 chr5 180915260 + 132974668 132974871 L1PA8 5853 - 0 204 147322 93 1 0 19 3 2 17 3 8 22 1 0 13 2 1 29 chain 5523 chr5 180915260 + 132974879 132974957 L1PA8 5853 + 5576 5653 189810 6 0 1 27 2 0 43 chain 25393 chr5 180915260 + 132983523 132983867 THE1B 368 + 0 368 102724 39 1 16 114 1 0 29 0 2 106 5 13 49 chain 51775 chr5 180915260 + 133007162 133007745 LTR10C 591 - 6 591 57770 75 0 2 508 chain 4225 chr5 180915260 + 133013656 133013828 L1MA8 2339 - 11 153 204225 19 2 0 5 68 48 23 8 6 29 6 0 12 chain 22941 chr5 180915260 + 133040765 133041037 AluSg7 307 - 23 295 115905 272 chain 13520 chr5 180915260 + 133105571 133105753 L1PB4 2604 - 33 216 146282 19 5 4 65 0 2 93 chain 13760 chr5 180915260 + 133136024 133136230 MER30 238 - 0 237 145404 46 3 0 54 2 0 6 11 29 70 0 18 14 chain 10478 chr5 180915260 + 133185256 133185385 MER85 139 + 0 139 158346 95 0 10 34 chain 161226 chr5 180915260 + 133187466 133189333 L1P2 5180 + 531 2418 23160 38 0 2 25 1 0 187 0 15 442 1 2 4 1 0 179 0 5 167 0 1 563 2 0 257 chain 127945 chr5 180915260 + 133192864 133194527 SVA_A 1864 - 0 1846 28582 195 0 1 115 0 1 225 65 0 11 3 0 142 0 74 43 7 188 144 40 0 79 44 1 68 0 77 195 1 0 223 0 1 63 chain 1997 chr5 180915260 + 133193437 133193464 SVA_A 1864 - 916 943 89368 27 chain 2485 chr5 180915260 + 133193814 133193854 SVA_A 1864 - 731 768 71320 36 3 0 1 chain 2734 chr5 180915260 + 133193933 133193977 SVA_A 1864 - 844 885 71320 36 3 0 5 chain 25922 chr5 180915260 + 133197736 133198051 AluY 311 + 0 311 100328 78 2 0 55 2 0 178 chain 10418 chr5 180915260 + 133289737 133289881 MSTA 426 + 41 192 158602 72 0 4 13 1 0 23 1 5 34 chain 6193 chr5 180915260 + 133320829 133320902 LTR47A 437 + 320 393 183636 73 chain 92919 chr5 180915260 + 133348297 133350961 L1PA16 3655 + 2109 3619 38680 130 2 0 18 4 5 7 2 0 18 1 2 375 18 17 14 5 1 18 241 18 171 1 0 4 1 2 5 1 0 8 1 0 9 648 27 22 0 2 59 15 16 34 9 12 97 6 5 13 1 28 17 300 0 26 21 19 270 3 0 14 23 0 11 5 0 16 chain 30104 chr5 180915260 + 133356880 133357235 L1PA6 6164 - 2 354 84471 13 3 0 339 chain 14482 chr5 180915260 + 133358275 133358466 MER61E 571 + 196 391 142944 71 0 5 28 1 0 91 chain 55210 chr5 180915260 + 133358480 133359175 L1PA8 5853 + 5156 5853 55577 12 0 3 331 1 0 62 1 0 45 2 0 69 11 16 45 3 2 19 3 2 91 chain 25870 chr5 180915260 + 133361926 133362230 AluY 311 + 10 307 100567 86 8 0 36 0 1 174 chain 3334 chr5 180915260 + 133369830 133369866 MER4E1 777 + 664 700 218344 36 chain 23180 chr5 180915260 + 133392375 133392679 AluSp 311 - 11 311 114768 188 1 2 16 0 3 36 16 8 47 chain 30271 chr5 180915260 + 133405416 133405820 MER41A 554 + 10 427 84015 27 0 11 306 18 15 28 0 5 25 chain 24239 chr5 180915260 + 133462322 133462604 AluSg 306 + 15 297 109003 282 chain 3998 chr5 180915260 + 133467835 133467886 MIR 256 + 57 130 207406 30 0 22 21 chain 3925 chr5 180915260 + 133489200 133489242 MER66B 489 + 295 337 208497 42 chain 23139 chr5 180915260 + 133567866 133568146 AluSg 306 + 28 305 114942 272 3 0 5 chain 5926 chr5 180915260 + 133599052 133599115 THE1-int 844 - 206 269 185938 63 chain 25495 chr5 180915260 + 133618983 133619334 THE1B 368 - 0 368 102246 186 18 16 26 0 4 77 0 15 44 chain 119416 chr5 180915260 + 133619334 133622212 THE1B-int 1605 - 0 1605 31259 106 12 0 6 7 13 371 1000 10 288 1 2 32 1 0 6 1 2 72 0 18 222 0 25 58 322 0 56 0 1 317 chain 23942 chr5 180915260 + 133622212 133622567 THE1B 368 - 0 368 110670 159 13 9 28 8 6 24 7 11 76 0 15 40 chain 6479 chr5 180915260 + 133632535 133632629 LTR51 675 - 435 540 181400 32 7 18 55 chain 8524 chr5 180915260 + 133658764 133658895 L1MC2 1988 + 166 302 168166 13 0 3 76 10 12 32 chain 506413 chr5 180915260 + 133667019 133673176 L1PA6 6164 - 20 6162 6441 208 0 4 147 8 7 224 0 6 223 3 7 973 22 1 336 0 3 301 1 4 311 1 2 114 0 5 77 2 1 71 6 0 794 8 0 420 1 2 270 1 2 285 21 20 369 0 1 152 0 17 220 1 0 117 19 0 251 3 0 197 chain 21357 chr5 180915260 + 133673415 133673689 HSMAR2 1300 - 1023 1299 122659 213 8 9 27 0 1 26 chain 25139 chr5 180915260 + 133682191 133682486 AluSp 311 - 16 311 104073 295 chain 26234 chr5 180915260 + 133704030 133704336 AluY 311 + 3 309 99079 306 chain 54502 chr5 180915260 + 133709168 133709812 L1PA5 6144 - 0 635 56024 6 7 0 66 2 0 72 3 0 8 1 4 479 chain 20714 chr5 180915260 + 133711287 133711517 AluYf4 310 + 82 309 124923 44 3 0 183 chain 26986 chr5 180915260 + 133736468 133736779 AluSp 311 - 0 311 96324 311 chain 28592 chr5 180915260 + 133740793 133741095 AluYk11 308 - 6 308 90779 302 chain 23145 chr5 180915260 + 133744086 133744380 AluY 311 + 8 287 114912 125 21 6 148 chain 4681 chr5 180915260 + 133749594 133749671 LTR49 580 + 490 570 198748 41 2 4 21 1 2 12 chain 28573 chr5 180915260 + 133756813 133757164 THE1A 353 - 0 353 90851 112 0 4 39 1 0 88 1 0 110 chain 13632 chr5 180915260 + 133793056 133793206 L1PA5 6144 + 5992 6142 145843 150 chain 29595 chr5 180915260 + 133805054 133805384 L1PA3long 6157 - 8 338 86221 330 chain 7293 chr5 180915260 + 133835868 133835960 U6 107 - 0 92 175484 92 chain 108420 chr5 180915260 + 133893069 133894229 L1HS 6032 - 0 1160 34585 1160 chain 11819 chr5 180915260 + 133921434 133921626 MER33 330 - 103 314 152949 40 8 13 20 2 0 29 11 26 58 0 1 24 chain 30686 chr5 180915260 + 133926197 133926977 MER51E 476 - 0 470 83062 13 6 7 41 2 0 6 34 55 52 0 1 39 331 0 256 chain 24467 chr5 180915260 + 133934942 133935232 AluSp 311 - 21 310 107720 267 1 0 22 chain 22273 chr5 180915260 + 133936057 133936342 AluSc 308 + 12 288 119019 25 7 0 220 6 4 27 chain 52067 chr5 180915260 + 133948498 133949086 LTR10C 591 + 0 591 57584 510 0 2 44 1 2 33 chain 23887 chr5 180915260 + 133964350 133964641 AluSg7 307 - 15 305 110982 160 1 0 130 chain 7301 chr5 180915260 + 133970533 133970624 U6 107 - 5 96 175435 91 chain 28237 chr5 180915260 + 133970972 133972041 LTR39 781 + 0 694 92169 24 0 2 10 30 26 49 0 11 164 314 232 29 15 16 55 303 0 76 chain 22570 chr5 180915260 + 134021402 134021694 AluSx 319 + 11 296 117719 38 3 0 76 2 0 160 2 0 11 chain 7187 chr5 180915260 + 134036862 134036948 U6 107 - 1 87 176162 86 chain 6737 chr5 180915260 + 134051173 134051269 U6 107 + 1 97 179417 57 0 1 5 4 3 30 chain 16143 chr5 180915260 + 134051272 134051539 L1PA8 5853 + 5588 5850 137923 20 2 0 57 18 17 6 1 0 10 1 2 40 2 1 19 2 1 89 chain 8320 chr5 180915260 + 134054021 134054783 Tigger3b 1229 + 45 710 169283 25 1 0 20 622 507 25 0 6 23 0 4 39 0 9 7 chain 24661 chr5 180915260 + 134065385 134065666 AluSp 311 - 22 303 106665 281 chain 23430 chr5 180915260 + 134087374 134087660 AluSp 311 - 16 300 113476 167 2 1 4 1 0 112 chain 22544 chr5 180915260 + 134090649 134090933 AluSp 311 + 15 301 117828 38 4 5 155 1 2 86 chain 19915 chr5 180915260 + 134127030 134127264 AluY 311 + 62 296 127413 234 chain 4116 chr5 180915260 + 134143010 134143079 MER5A1 166 - 91 166 205699 39 0 4 13 6 8 11 chain 12717 chr5 180915260 + 134149795 134149982 MER44A 345 + 115 314 149394 53 0 10 20 1 0 57 14 17 42 chain 24188 chr5 180915260 + 134172664 134172951 AluSp 311 - 13 300 109283 287 chain 22062 chr5 180915260 + 134184370 134184663 AluSp 311 + 1 298 119958 44 8 9 78 3 6 160 chain 148444 chr5 180915260 + 134216899 134218561 SVA_D 2077 - 21 2059 24821 514 0 225 256 0 1 5 17 159 170 0 3 406 0 3 259 1 0 10 4 7 20 chain 24696 chr5 180915260 + 134219941 134220237 AluSp 311 - 18 311 106458 11 3 0 282 chain 4270 chr5 180915260 + 134221668 134221738 L1MA4 2864 + 2741 2809 203622 24 1 2 5 3 0 37 chain 70124 chr5 180915260 + 134226419 134227337 Tigger1 2417 - 380 1292 48342 202 0 1 5 1 0 504 6 7 178 9 2 13 chain 8175 chr5 180915260 + 134311788 134311913 MSTB 430 - 12 140 170095 61 2 0 35 10 15 17 chain 6111 chr5 180915260 + 134320859 134320972 L1PB3 3668 + 3434 3528 184334 44 20 4 18 0 1 5 4 0 22 chain 32946 chr5 180915260 + 134325808 134326252 MER4A1 472 - 1 472 79298 215 20 44 182 5 6 7 0 2 15 chain 534080 chr5 180915260 + 134333626 134339777 L1PA5 6144 - 12 6137 3696 134 1 7 9 3 0 643 0 1 62 1 5 9 0 1 190 0 1 333 0 5 330 0 1 579 14 3 649 1 0 9 3 0 276 20 4 325 22 1 1108 1 6 21 0 5 1085 1 0 50 0 1 272 chain 3003 chr5 180915260 + 134417091 134417129 HAL1 992 - 492 529 224967 10 1 0 27 chain 24814 chr5 180915260 + 134417298 134417655 THE1D 372 - 2 372 105816 58 0 1 4 1 0 95 25 24 39 0 10 7 6 10 122 chain 64829 chr5 180915260 + 134418563 134419279 L1PA3long 6157 - 0 716 50646 716 chain 27663 chr5 180915260 + 134425193 134425560 THE1C 375 + 0 374 94175 135 0 4 42 1 2 20 7 10 133 4 3 25 chain 46125 chr5 180915260 + 134428719 134429804 L1PB1 5432 - 10 737 61919 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 4 359 32 15 1 0 45 6 5 10 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 33 11 87 1 9 312 chain 39461 chr5 180915260 + 134432767 134433370 L1PB3 3668 + 2987 3568 70070 11 3 0 84 1 4 4 1 0 158 0 1 42 1 0 81 2 1 5 0 1 7 6 5 85 22 6 13 1 0 9 1 0 24 3 1 39 chain 2975 chr5 180915260 + 134434912 134434944 MER44B 551 - 446 478 225540 32 chain 57550 chr5 180915260 + 134479245 134480027 L1PA8 5853 - 0 776 54211 48 15 7 37 2 1 19 2 1 61 1 0 36 0 1 34 2 0 44 1 0 11 0 6 330 3 1 11 7 8 67 0 1 39 1 2 11 chain 38807 chr5 180915260 + 134487449 134487885 L1PA4 6152 + 5704 6140 71008 436 chain 78821 chr5 180915260 + 134500798 134501729 L1PA7 6471 - 1 934 44139 12 3 1 216 1 0 231 0 1 53 1 0 252 0 1 97 0 4 65 chain 9103 chr5 180915260 + 134516476 134516605 MER85 139 - 0 139 165057 40 15 25 74 chain 16849 chr5 180915260 + 134517001 134517221 MER30 238 + 2 238 135982 106 5 21 109 chain 4048 chr5 180915260 + 134547450 134547496 MER5A 189 - 118 164 206667 46 chain 90775 chr5 180915260 + 134595559 134596831 L1MA2 4263 - 157 1429 39368 37 23 14 90 13 11 47 2 0 48 1 0 57 3 0 140 1 0 75 7 3 70 0 1 349 7 10 177 2 1 24 0 18 24 1 2 74 chain 3644 chr5 180915260 + 134613525 134613565 HAL1 992 - 498 538 212892 40 chain 24257 chr5 180915260 + 134635753 134636066 AluSq2 311 + 11 305 108906 117 14 0 170 5 0 7 chain 12569 chr5 180915260 + 134638293 134638466 MER44A 345 + 128 322 149971 13 1 0 27 0 21 63 2 3 67 chain 47924 chr5 180915260 + 134699201 134699756 L1PA6 6164 - 330 898 60541 95 0 2 202 0 3 213 1 5 14 0 4 30 chain 27121 chr5 180915260 + 134699767 134700123 L1PA6 6164 + 5842 6162 95865 258 37 1 61 chain 6430 chr5 180915260 + 134706771 134706926 L1MA8 2339 + 1959 2141 181773 50 2 1 34 54 82 15 chain 124163 chr5 180915260 + 134744256 134745673 SVA_C 1631 + 22 1622 29646 518 27 0 130 0 40 9 0 40 91 0 88 9 3 0 6 0 3 33 0 41 269 0 1 322 chain 91336 chr5 180915260 + 134750722 134751805 L1PA6 6164 - 2 1098 39180 152 10 8 38 1 18 292 2 0 114 0 1 224 1 0 249 chain 3949 chr5 180915260 + 134753617 134753682 L1MB3 1562 - 55 119 208141 25 7 6 33 chain 10915 chr5 180915260 + 134795577 134795706 MER85 139 - 0 139 156537 40 0 10 89 chain 17114 chr5 180915260 + 134821005 134821227 Tigger3d 321 - 74 298 135271 59 0 4 139 2 0 22 chain 27011 chr5 180915260 + 134831262 134831610 THE1A 353 - 0 353 96252 220 10 16 7 1 0 110 chain 7449 chr5 180915260 + 134836797 134837174 MLT1C 463 - 18 400 174448 67 3 6 20 192 206 6 1 0 12 44 33 32 chain 106959 chr5 180915260 + 134858703 134860214 THE1C-int 1605 - 13 1605 34987 42 14 11 365 1 2 97 0 21 154 3 2 76 0 7 54 12 7 11 12 13 16 31 29 233 0 7 94 10 6 163 0 55 82 5 7 11 7 9 18 chain 23101 chr5 180915260 + 134866112 134866452 THE1B 368 - 0 356 115140 75 1 0 99 2 0 22 1 0 36 9 14 58 5 20 32 chain 13057 chr5 180915260 + 134879965 134880114 AluSq 315 + 157 306 148004 149 chain 21821 chr5 180915260 + 134938305 134938546 L1PA5 6144 - 0 241 120940 241 chain 3466 chr5 180915260 + 134993665 134993705 MSTA 426 - 386 426 215867 40 chain 70589 chr5 180915260 + 135000393 135001401 L1PB3 3668 - 110 1100 48119 29 3 1 24 0 4 18 17 1 88 6 5 98 3 2 202 3 4 76 7 0 16 0 2 161 12 0 13 0 1 26 0 6 116 10 17 80 chain 23485 chr5 180915260 + 135027726 135028024 AluSc8 310 + 2 301 113196 131 10 12 71 1 0 85 chain 21890 chr5 180915260 + 135066264 135066522 THE1B-int 1605 + 5 264 120663 196 0 1 62 chain 27858 chr5 180915260 + 135066695 135067073 LTR7 482 - 8 482 93496 168 0 1 29 0 31 17 3 4 11 0 13 49 1 51 100 chain 103313 chr5 180915260 + 135068905 135070234 HERVH-int 3825 - 0 1698 35921 529 0 1 35 18 17 57 11 381 31 2 0 447 0 1 199 chain 12489 chr5 180915260 + 135097003 135097144 L1PA5 6144 + 5997 6138 150296 141 chain 11030 chr5 180915260 + 135147868 135148078 L1MA3 4352 - 11 207 156092 10 3 0 3 1 0 14 1 0 26 1 0 4 7 6 19 2 0 23 4 0 18 7 6 67 chain 3612 chr5 180915260 + 135171996 135172038 MADE1 96 - 54 96 213454 42 chain 121040 chr5 180915260 + 135173560 135175353 THE1B-int 1605 + 0 1605 30681 430 38 21 258 1 2 242 10 0 62 1 2 138 1 0 4 181 17 24 3 4 63 1 2 336 chain 20864 chr5 180915260 + 135194847 135195185 THE1B 368 - 26 367 124416 28 3 4 4 1 0 63 2 1 12 1 0 16 0 4 10 1 0 4 24 27 59 3 2 107 chain 22485 chr5 180915260 + 135291194 135291583 MSTA 426 + 0 426 118082 163 9 5 37 36 35 46 29 71 69 chain 22272 chr5 180915260 + 135304151 135304480 THE1B 368 + 28 368 119024 9 0 5 130 3 2 27 9 8 4 0 1 14 7 15 44 2 1 80 chain 239107 chr5 180915260 + 135318219 135320822 L1PA2 6032 - 16 2623 16822 1783 0 4 820 chain 20895 chr5 180915260 + 135357016 135357378 THE1B 368 - 0 368 124294 56 7 6 63 60 66 60 11 12 105 chain 3086 chr5 180915260 + 135411038 135411073 MER5A 189 + 38 73 223164 35 chain 13511 chr5 180915260 + 135413972 135414159 MER30 238 - 0 202 146320 46 3 0 60 4 22 74 chain 11605 chr5 180915260 + 135504431 135504594 L1MC1 2226 - 178 338 153869 68 3 0 54 0 1 11 2 1 25 chain 44149 chr5 180915260 + 135504604 135505158 MLT2A2 560 - 8 560 64011 41 3 0 110 4 5 116 0 1 75 0 1 11 2 1 134 1 0 57 chain 12458 chr5 180915260 + 135519345 135519566 MER30 238 + 0 232 150427 12 26 27 68 5 14 71 9 10 30 chain 83627 chr5 180915260 + 135555618 135556667 MER11A 1151 + 0 1151 42061 55 0 99 76 1 0 62 12 8 26 0 2 477 2 1 56 3 0 26 0 9 20 0 1 233 chain 11082 chr5 180915260 + 135582718 135582906 MER75 514 + 74 252 155878 106 15 0 11 17 22 39 chain 547497 chr5 180915260 + 135624859 135630987 L1PA4 6152 + 0 6152 1769 142 1 15 430 0 1 642 0 1 1952 1 0 722 0 1 96 0 4 1096 0 2 415 1 0 94 0 1 33 1 2 168 1 2 333 chain 30113 chr5 180915260 + 135637061 135637513 LTR7B 505 + 0 495 84448 105 2 12 58 0 38 12 3 27 28 29 0 38 0 1 46 1 0 23 0 1 52 18 17 37 chain 288031 chr5 180915260 + 135637523 135641036 HERVH-int 3825 + 0 3825 14156 164 0 2 227 1 4 59 61 0 29 1 57 13 0 3 12 1 0 10 1 0 24 1 93 81 2 1 594 1 3 630 0 4 1033 36 38 39 0 210 96 23 23 149 0 2 225 chain 29091 chr5 180915260 + 135642250 135642702 LTR7B 505 + 0 495 88586 95 13 23 57 0 38 12 34 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 41 chain 44880 chr5 180915260 + 135661392 135661972 MER51C 639 + 17 613 63196 122 13 27 42 0 1 54 0 1 349 chain 24805 chr5 180915260 + 135672212 135672536 L1PA6 6164 - 12 334 105863 134 16 15 10 1 0 163 chain 13415 chr5 180915260 + 135681754 135681912 L1PA5 6144 + 5963 6128 146653 36 0 7 122 chain 10026 chr5 180915260 + 135719594 135719856 L1PA11 4918 - 289 516 160450 18 47 33 11 2 0 13 1 0 15 32 22 9 4 0 20 1 0 15 2 0 67 1 0 4 chain 37293 chr5 180915260 + 135722711 135723509 LTR10F 562 + 0 562 73090 33 0 4 152 2 67 112 37 23 107 291 0 64 chain 29102 chr5 180915260 + 135746133 135746443 AluYa5 310 - 0 310 88542 310 chain 41675 chr5 180915260 + 135746716 135747161 L1HS 6032 + 5586 6031 67062 445 chain 6639 chr5 180915260 + 135749569 135749647 LTR5_Hs 974 + 0 78 180175 78 chain 56269 chr5 180915260 + 135749650 135750294 HERVK-int 6823 - 1295 1940 54984 13 1 0 100 0 1 186 0 1 344 chain 131559 chr5 180915260 + 135779719 135781325 LTR12C 1709 + 0 1709 27733 33 1 0 449 2 1 167 0 119 68 1 0 47 18 4 62 0 1 161 1 0 4 5 3 105 0 4 399 1 0 82 chain 141314 chr5 180915260 + 135785187 135787451 L1PB1 5432 + 3474 5400 25935 7 1 0 5 2 0 119 0 1 123 0 7 226 1 0 51 4 0 38 0 4 708 2 1 282 0 1 5 1 0 51 1 6 5 1 0 24 0 2 7 20 11 9 2 0 6 316 0 47 2 1 16 2 1 37 6 5 16 1 0 4 2 0 11 9 0 16 6 5 14 2 0 24 1 0 21 1 0 9 chain 74596 chr5 180915260 + 135811103 135812188 L1PB 1623 - 96 1191 46213 11 1 0 15 1 0 13 3 0 4 1 0 30 17 1 10 0 14 6 0 24 82 25 15 661 21 25 127 6 5 17 1 2 33 chain 7244 chr5 180915260 + 135812213 135812317 L1PB1 5432 + 4604 4702 175805 22 8 0 22 0 2 52 chain 18633 chr5 180915260 + 135812318 135812548 L1PB1 5432 + 4705 4934 131126 99 1 0 130 chain 11805 chr5 180915260 + 135812548 135812703 L1PB1 5432 + 4938 5095 153006 143 0 2 12 chain 8976 chr5 180915260 + 135812940 135813172 L1PB1 5432 + 5102 5296 165738 12 1 0 21 1 0 9 1 0 14 5 1 9 2 0 44 1 0 4 30 29 28 34 7 16 chain 2266 chr5 180915260 + 135813279 135813309 L1PB1 5432 + 5393 5422 235782 11 1 0 18 chain 333380 chr5 180915260 + 135828833 135835814 L1PB1 5432 - 12 4658 12072 16 1 0 13 1 0 20 4 3 22 2 0 14 8 5 19 19 8 4 1 0 16 4 2 42 21 19 28 697 107 85 9 10 71 5 1 91 0 3 6 0 8 66 21 22 33 329 1 64 3 0 8 40 0 442 0 1 168 11 10 29 0 1 144 315 0 16 1 2 79 1 0 238 3 1 39 2 0 127 8 15 464 5 4 333 1 0 24 6 8 38 1 0 177 0 1 28 0 1 180 1 3 76 0 2 47 0 1 129 0 1 56 1 4 302 17 25 4 1 0 341 1094 29 249 chain 81902 chr5 180915260 + 135834499 135835546 MER11C 1089 - 25 1089 42805 148 2 1 49 0 1 127 0 1 38 1 0 4 1 5 369 0 4 62 0 9 246 chain 26470 chr5 180915260 + 135859395 135859801 THE1D 372 - 0 372 98166 32 5 4 142 53 16 6 0 4 168 chain 29132 chr5 180915260 + 135876631 135877063 LTR7Y 441 - 0 441 88397 209 54 72 54 12 3 103 chain 241492 chr5 180915260 + 135877608 135880644 HERVH-int 3825 - 828 3815 16697 424 5 0 6 0 5 846 4 31 243 0 1 145 2 0 73 15 0 444 1 0 49 67 13 18 2 1 42 1 0 25 3 0 9 6 18 24 1 0 10 1 0 38 5 0 10 23 22 11 2 0 219 7 5 255 chain 28935 chr5 180915260 + 135880656 135881082 LTR7Y 441 - 2 441 89287 195 61 83 58 9 0 103 chain 24288 chr5 180915260 + 135882019 135882449 LTR7 482 - 0 482 108716 49 12 14 111 0 1 11 0 31 42 1 2 10 25 86 19 49 5 101 chain 171501 chr5 180915260 + 135883712 135886417 HERVH-int 3825 - 0 2579 21884 326 1 3 158 8 218 39 9 11 233 21 5 7 0 16 387 0 2 273 0 4 134 1 5 78 0 1 4 1 0 168 0 1 6 2 1 120 91 90 64 330 0 6 10 0 20 23 14 185 chain 4719 chr5 180915260 + 135887190 135887243 LTR7Y 441 - 0 53 198290 53 chain 38702 chr5 180915260 + 135887274 135887711 LTR7 482 - 14 482 71149 171 0 31 266 chain 3111 chr5 180915260 + 135900145 135900204 LTR12F 595 + 185 235 222733 25 14 5 20 chain 19877 chr5 180915260 + 135900657 135901028 L1PA16 3655 - 402 751 127564 24 31 0 26 1 0 65 39 49 14 7 6 85 0 2 56 5 4 18 chain 38483 chr5 180915260 + 135901040 135901479 LTR7 482 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chr5 180915260 + 136008319 136008864 L1MA3 4352 - 0 473 133089 13 34 25 26 1 0 4 3 2 24 14 12 67 1 0 11 51 1 48 52 29 13 35 44 33 13 16 41 24 27 37 chain 23800 chr5 180915260 + 136054707 136054985 AluY 311 + 20 296 111477 103 1 0 10 1 0 163 chain 20949 chr5 180915260 + 136069090 136069351 AluYf5 307 - 7 266 124113 36 6 4 20 1 0 159 0 1 39 chain 48607 chr5 180915260 + 136071176 136071789 LTR30 714 + 0 630 60029 241 8 13 80 0 1 108 7 18 169 chain 26802 chr5 180915260 + 136072731 136073108 LTR7 482 + 0 469 96973 101 13 63 36 19 61 208 chain 12120 chr5 180915260 + 136074931 136075197 LTR7 482 + 0 365 151732 53 0 6 42 15 14 17 36 129 24 26 27 53 chain 8905 chr5 180915260 + 136075198 136075301 LTR7 482 + 367 470 166113 103 chain 87910 chr5 180915260 + 136080800 136082283 L1MA1 4479 + 1962 4142 40409 19 0 3 105 1 0 8 2 3 15 10 15 258 25 13 5 0 1 41 77 21 133 1 0 60 11 10 96 9 7 29 1 0 6 0 1 97 3 10 10 0 1 6 0 3 20 1 0 27 2 0 39 83 838 85 9 5 10 0 4 112 1 0 28 4 2 34 chain 241849 chr5 180915260 + 136087045 136089853 L1PA6 6164 - 7 2834 16677 327 12 8 501 0 6 221 0 13 281 1 0 389 4 8 258 0 1 814 chain 11188 chr5 180915260 + 136098561 136098714 MLT1A1 405 - 12 163 155479 58 1 0 55 1 0 38 chain 556100 chr5 180915260 + 136118488 136124518 L1PA2 6032 - 0 6032 713 145 1 0 1216 0 2 3475 0 1 1193 chain 103323 chr5 180915260 + 136147614 136149142 L1PB1 5432 + 3929 5424 35920 23 0 1 481 0 1 174 0 4 15 29 26 51 0 2 34 0 1 63 2 1 9 4 0 231 0 1 6 1 0 50 16 14 17 1 0 13 16 11 11 3 1 50 2 1 16 1 0 43 1 0 21 19 7 19 8 5 14 2 0 24 1 0 20 2 1 13 1 0 16 1 0 4 chain 15229 chr5 180915260 + 136157969 136158692 L1PB1 5432 - 28 638 19436 12 1 0 22 1 0 24 2 0 12 11 8 9 0 2 6 17 7 8 2 0 13 2 1 43 19 17 29 47 41 4 1 0 8 1 0 23 12 0 10 75 2 84 17 9 194 0 8 14 chain 535219 chr5 180915260 + 136158717 136164839 L1PA5 6144 - 6 6141 3567 252 0 1 589 1 5 84 0 4 1528 3 0 106 0 1 66 2 0 164 4 0 141 0 1 37 0 1 845 1 0 145 0 1 477 0 1 235 0 8 767 0 1 675 chain 50826 chr5 180915260 + 136164902 136167315 L1PB1 5432 - 669 3492 19436 141 3 0 101 9 14 126 6 7 400 14 22 195 48 48 101 6 7 363 0 1 200 0 1 14 2 386 12 9 10 320 0 1 111 0 10 232 chain 475079 chr5 180915260 + 136183102 136189291 L1PA7 6471 - 1 5858 7879 6 2 0 325 0 7 71 0 1 224 0 1 28 307 0 107 11 13 732 1 0 246 2 1 187 1 3 147 0 1 651 0 1 302 0 4 235 13 14 527 45 0 177 1 0 323 0 1 105 0 1 812 0 4 488 19 18 94 chain 22327 chr5 180915260 + 136192870 136193168 L1PA7 6471 + 6176 6469 118791 57 6 1 73 2 0 5 9 11 146 chain 300458 chr5 180915260 + 136233854 136237608 L1PA8A 6298 - 7 3783 13399 101 1 2 16 0 1 261 0 1 199 0 6 45 0 1 169 1 0 55 1 0 615 1 0 24 1 2 35 0 1 110 0 3 500 1 0 70 0 6 162 7 8 11 0 1 7 0 1 177 1 0 209 4 6 142 0 4 38 0 3 669 12 6 109 chain 27693 chr5 180915260 + 136249103 136249408 AluYa8 305 - 0 305 94067 305 chain 266227 chr5 180915260 + 136249408 136252403 L1PA3long 6157 - 844 3844 15381 13 1 0 939 0 7 217 0 1 873 2 1 91 2 1 857 chain 67019 chr5 180915260 + 136252403 136253140 L1PA3long 6157 + 1562 2299 49612 737 chain 32383 chr5 180915260 + 136256968 136257469 L1PA16 3655 + 3067 3573 80218 45 2 0 5 0 2 85 1 0 81 15 21 111 1 2 88 37 36 30 chain 318004 chr5 180915260 + 136263955 136267957 L1PA7 6471 - 7 3947 12673 20 0 1 4 0 1 71 5 3 422 0 1 314 0 7 22 1 6 300 41 2 739 0 1 290 3 4 252 37 7 145 1 2 134 0 4 215 1 0 254 4 0 6 5 10 127 0 4 38 1 0 412 21 5 117 chain 99653 chr5 180915260 + 136267969 136269199 L1PA7 6471 + 1284 2521 36866 73 1 0 4 0 1 396 3 4 55 0 3 174 0 2 172 2 1 222 0 1 49 0 1 79 chain 13952 chr5 180915260 + 136276963 136277331 L1PA7 6471 - 2 372 6755 5 2 0 5 3 0 28 2 1 96 6 14 221 chain 512622 chr5 180915260 + 136277353 136283267 L1PA4 6152 - 11 6152 5908 811 6 229 813 0 2 380 0 1 487 3 0 154 10 0 92 0 1 1493 0 2 440 1 0 188 0 7 220 9 11 203 8 10 15 0 1 581 chain 262547 chr5 180915260 + 136283267 136290192 L1PA7 6471 - 373 6471 6755 398 0 2 21 3 0 5 0 3 7 1 0 38 0 3 412 9 10 73 0 6 440 0 4 155 0 2 61 0 1 199 0 1 258 0 1 147 1 2 60 8 10 63 0 1 212 10 0 338 1 12 49 0 4 194 0 4 270 3 1 27 0 6 115 0 1 58 0 1 120 0 12 117 891 0 742 0 1 214 1 5 195 0 5 350 0 2 257 0 1 402 chain 10625 chr5 180915260 + 136287140 136287275 L1PA7 6471 - 728 862 156442 127 1 0 7 chain 66113 chr5 180915260 + 136287275 136288009 L1PA4 6152 + 5416 6151 50048 401 0 1 333 chain 40760 chr5 180915260 + 136310240 136310770 MER1A 529 - 0 529 68224 62 15 14 453 chain 20818 chr5 180915260 + 136316087 136316366 THE1B 368 + 0 306 124544 90 15 0 78 2 1 27 0 43 67 chain 35238 chr5 180915260 + 136332279 136332749 LTR12F 595 + 0 595 75874 91 1 144 11 1 0 21 23 6 322 chain 87216 chr5 180915260 + 136341678 136342709 L1PA7 6471 - 1284 2327 40683 510 0 8 90 0 1 4 1 0 209 0 1 147 0 1 4 0 2 66 chain 104063 chr5 180915260 + 136342710 136343983 L1PA7 6471 + 5190 6465 35719 306 0 1 4 8 0 53 0 1 47 8 15 86 0 1 381 0 1 51 1 0 328 chain 558990 chr5 180915260 + 136380331 136386345 L1PA2 6032 - 0 6021 420 1799 0 7 4215 chain 56418 chr5 180915260 + 136395140 136396009 L1PA15 4387 + 3523 4366 54897 187 12 4 99 0 2 18 9 5 27 1 5 15 2 0 48 1 0 7 0 2 162 2 1 25 1 0 54 2 1 24 4 0 7 2 1 50 7 4 42 2 0 16 5 0 27 1 0 10 chain 28885 chr5 180915260 + 136398641 136398946 AluYb8 318 + 0 306 89512 108 0 1 197 chain 17376 chr5 180915260 + 136428500 136428878 MSTC 436 - 37 436 134573 65 95 105 92 36 44 29 1 0 46 0 4 14 chain 17313 chr5 180915260 + 136495686 136496019 L1PB1 5432 - 22 327 134748 8 1 0 11 1 0 21 1 0 24 2 0 14 8 5 30 10 1 16 1 0 43 1 0 16 2 1 24 0 1 28 2 0 9 16 11 13 1 0 21 1 0 8 chain 7126 chr5 180915260 + 136536354 136536482 L1PA8 5853 - 0 131 176570 29 11 15 49 2 1 6 0 1 11 2 1 18 chain 13199 chr5 180915260 + 136544160 136544343 L1PA16 3655 + 3354 3537 147470 53 1 0 8 16 17 105 chain 16073 chr5 180915260 + 136577887 136578188 THE1B 368 + 0 306 138139 63 5 7 34 18 17 48 1 0 11 0 1 4 1 0 5 8 11 13 0 4 6 0 15 5 17 0 62 chain 42171 chr5 180915260 + 136594836 136595340 L1PA7 6471 + 5968 6468 66437 493 4 0 7 chain 3198 chr5 180915260 + 136611223 136611266 MER5B 177 - 119 161 220959 6 1 0 36 chain 29699 chr5 180915260 + 136655352 136655662 AluYb8 318 + 0 310 85831 310 chain 3297 chr5 180915260 + 136668414 136668451 U2 167 - 130 167 219030 37 chain 76981 chr5 180915260 + 136673713 136674568 L1PA4 6152 - 0 860 44978 55 0 4 90 1 2 709 chain 7229 chr5 180915260 + 136721531 136721693 MER58A 224 - 11 179 175899 81 63 69 18 chain 32023 chr5 180915260 + 136726595 136727056 L1PA8 5853 - 3 465 80830 90 1 0 19 2 1 52 11 9 23 4 10 36 9 0 8 0 7 33 1 0 41 0 1 91 0 1 40 chain 536050 chr5 180915260 + 136753503 136759608 L1PA4 6152 - 9 6140 3441 841 0 4 216 0 1 1085 1 6 52 0 1 428 1 0 155 0 1 1590 0 13 1178 4 5 195 8 9 351 chain 8193 chr5 180915260 + 136787591 136787798 Tigger4a 237 - 1 194 169992 62 56 59 46 28 11 15 chain 12514 chr5 180915260 + 136798861 136799063 L1MA2 4263 + 3902 4114 150184 45 0 1 8 11 9 55 0 19 19 7 0 47 1 0 9 chain 12672 chr5 180915260 + 136809527 136809774 L1PB1 5432 + 5063 5296 149563 40 1 0 10 2 1 20 1 0 13 27 20 50 6 5 15 1 0 44 4 2 13 chain 100641 chr5 180915260 + 136835196 136836286 L1PA2 6032 - 1 1091 36597 1090 chain 337911 chr5 180915260 + 136861703 136865514 L1PA5 6144 + 2330 6144 11957 865 1 2 82 1 0 324 0 2 90 0 1 2448 chain 532467 chr5 180915260 + 136870812 136879109 L1PA5 6144 + 0 6139 3914 475 0 1 664 12 7 251 0 1 36 4 3 4 0 1 392 2170 0 2256 0 10 813 3 4 373 10 14 834 chain 170035 chr5 180915260 + 136872689 136874819 SVA_D 2077 - 5 2071 22045 627 1 0 44 4 0 13 31 6 171 4 0 28 48 0 129 0 1 4 1 0 11 0 2 67 78 0 22 11 0 31 2 0 13 2 0 137 0 115 615 6 0 30 chain 2583 chr5 180915260 + 136873378 136873409 SVA_D 2077 - 791 822 73049 31 chain 4000 chr5 180915260 + 136873612 136873660 SVA_D 2077 - 1072 1121 73049 18 0 1 30 chain 4083 chr5 180915260 + 136873872 136873942 SVA_D 2077 - 881 951 96067 70 chain 2200 chr5 180915260 + 136883618 136883851 L1PB1 5432 - 41 263 55498 21 1 0 23 0 8 7 14 11 10 9 0 16 3 0 14 1 0 45 21 19 48 chain 298277 chr5 180915260 + 136883860 136888689 L1PA7 6471 + 2829 6469 13516 438 0 2 656 1282 0 84 1 0 78 1 105 15 9 1 69 0 2 1178 0 1 156 1 4 89 2 0 86 1 0 316 12 5 22 0 1 178 0 1 143 2 0 10 chain 2074 chr5 180915260 + 136884968 136884990 L1PA5 6144 + 4890 4912 237917 22 chain 108084 chr5 180915260 + 136884990 136886220 L1PA5 6144 + 4913 6144 34691 243 0 1 477 1 0 360 5 6 144 chain 6855 chr5 180915260 + 136888751 136889477 L1PB1 5432 - 289 1016 55498 5 1 0 23 7 0 6 12 17 279 0 1 133 0 5 34 22 20 204 chain 89568 chr5 180915260 + 136889477 136890645 L1PB1 5432 + 3240 4407 39790 47 1 0 441 1 4 45 0 1 127 0 2 223 4 15 13 20 1 210 0 2 36 chain 24354 chr5 180915260 + 136905454 136905817 THE1D 372 - 10 372 108350 123 43 51 133 9 0 55 chain 3712 chr5 180915260 + 136992557 136992610 MIRb 242 + 67 119 211750 7 1 0 45 chain 3522 chr5 180915260 + 136994182 136994226 MIR 256 + 94 138 215025 44 chain 5369 chr5 180915260 + 137004511 137004613 MER63A 208 + 116 208 191329 27 12 5 13 6 0 6 0 3 38 chain 99314 chr5 180915260 + 137022587 137023848 SVA_E 1901 + 685 1879 36949 44 7 6 10 126 59 8 1 0 5 1 0 110 4 0 32 4 0 9 0 12 115 1 0 784 chain 9429 chr5 180915260 + 137022648 137022774 SVA_E 1901 + 824 974 69058 56 0 1 4 14 38 35 2 1 15 chain 3900 chr5 180915260 + 137024818 137024867 L1PA17 2846 + 2645 2693 208848 4 1 0 44 chain 26776 chr5 180915260 + 137039812 137040093 AluYb9 318 + 20 301 97062 281 chain 14263 chr5 180915260 + 137049568 137049729 L1PA4 6152 - 0 164 143672 13 0 3 148 chain 3246 chr5 180915260 + 137082246 137082285 L2a 937 + 727 766 220078 39 chain 118669 chr5 180915260 + 137093456 137095061 Charlie3 2679 - 77 1734 31544 57 24 19 66 5 4 173 1 13 40 19 23 88 11 10 412 9 38 22 3 2 57 1 4 189 0 4 113 0 3 59 0 4 25 0 1 34 1 0 4 0 1 192 chain 2786 chr5 180915260 + 137100348 137100525 L1M1 2793 + 2366 2542 228913 24 126 125 27 chain 146964 chr5 180915260 + 137102793 137106187 L1MA3 4352 + 858 4076 25024 5 2 0 13 1 0 58 0 1 57 0 1 12 11 9 67 1 0 17 36 35 31 1242 1034 115 1 0 39 1 0 227 4 0 113 0 1 241 35 36 59 6 1 17 0 1 244 0 2 5 9 7 198 0 1 25 1 4 120 0 12 66 5 6 125 7 35 178 chain 86085 chr5 180915260 + 137103233 137104315 MER11B 1079 + 0 1074 41128 135 0 1 576 0 5 24 10 0 26 0 2 107 0 1 35 5 6 65 0 2 48 0 1 21 11 0 19 chain 6424 chr5 180915260 + 137118306 137118409 MER65A 464 + 112 212 181832 66 15 12 22 chain 442499 chr5 180915260 + 137119058 137124784 L1PA6 6164 + 493 6160 8979 15 0 1 4 30 24 28 111 35 145 21 0 42 0 17 141 13 32 61 12 13 4 1 0 46 57 56 222 0 2 943 0 2 851 8 8 4 0 1 41 7 11 288 1 0 106 2 0 102 4 3 236 3 0 1341 0 4 217 0 1 4 1 0 153 4 0 288 1 0 107 0 10 52 3 0 6 chain 35169 chr5 180915260 + 137141144 137141577 MER57A1 433 + 0 433 75954 277 0 1 13 1 0 142 chain 44983 chr5 180915260 + 137148072 137148595 L1PA2 6032 - 0 508 63073 11 2 0 56 4 0 50 13 4 387 chain 25815 chr5 180915260 + 137157551 137157839 AluY 311 + 4 293 100808 128 0 1 160 chain 4660 chr5 180915260 + 137168734 137169045 LTR37A 408 - 41 373 198955 50 239 260 22 chain 62453 chr5 180915260 + 137178523 137179245 L1PA7 6471 + 5747 6467 51692 389 0 1 322 3 0 8 chain 542747 chr5 180915260 + 137304286 137310307 L1PA3long 6157 + 0 6156 2383 152 6 7 399 1 0 183 0 1 34 1 129 2991 0 2 48 0 1 413 0 2 793 0 5 650 7 3 343 chain 90921 chr5 180915260 + 137312232 137313283 MER11C 1089 + 0 1059 39318 317 0 4 369 0 4 365 chain 27440 chr5 180915260 + 137341591 137341885 AluYg6 310 - 16 310 94852 294 chain 23521 chr5 180915260 + 137381661 137382004 THE1B 368 + 0 356 113015 44 6 21 103 1 0 6 1 0 30 3 0 5 0 3 30 0 1 44 2 1 68 chain 20204 chr5 180915260 + 137384672 137384919 AluSz6 309 - 51 298 126519 247 chain 6537 chr5 180915260 + 137393377 137393456 MER6A 605 - 107 186 180947 79 chain 2947 chr5 180915260 + 137402967 137402998 U2 167 + 0 31 226116 31 chain 25509 chr5 180915260 + 137403305 137403615 AluYf5 307 - 3 307 102182 36 10 8 128 4 0 132 chain 111074 chr5 180915260 + 137405741 137407045 SVA_D 2077 + 593 2074 33913 94 0 40 181 0 85 41 10 12 185 0 78 68 0 13 11 41 0 673 chain 2883 chr5 180915260 + 137406331 137406372 SVA_D 2077 + 1135 1176 75243 41 chain 10810 chr5 180915260 + 137414913 137415328 MER63B 433 + 51 430 156943 74 35 0 4 27 0 54 63 65 16 7 12 14 94 113 27 chain 23920 chr5 180915260 + 137416649 137416937 AluY 311 + 1 305 110807 123 8 24 157 chain 5747 chr5 180915260 + 137458722 137458790 U6 107 - 26 94 187662 68 chain 10865 chr5 180915260 + 137460000 137460175 L1MA8 2339 - 789 959 156719 82 31 26 62 chain 63750 chr5 180915260 + 137479207 137480145 LTR12 884 + 0 884 51123 35 0 1 145 0 25 77 1 20 74 2 0 126 6 8 47 103 0 248 14 18 60 chain 13510 chr5 180915260 + 137483746 137483956 MER30 238 - 0 201 146326 39 6 0 41 0 6 14 2 0 28 3 0 9 14 0 20 0 10 34 chain 7104 chr5 180915260 + 137538896 137539111 L1MC2 1988 + 1783 1988 176732 23 0 2 30 101 91 12 1 0 5 1 0 42 chain 7738 chr5 180915260 + 137541592 137541686 Tigger4a 237 + 143 237 172674 94 chain 22378 chr5 180915260 + 137551294 137551590 AluY 311 + 4 306 118592 128 10 14 12 0 1 36 3 4 107 chain 46355 chr5 180915260 + 137554739 137555252 MER9a1 513 - 0 513 61728 513 chain 28205 chr5 180915260 + 137556629 137556934 AluYf4 310 - 5 310 92289 305 chain 5840 chr5 180915260 + 137570127 137570244 MLT1C 463 - 346 463 186766 10 1 2 16 0 2 36 23 20 31 chain 22370 chr5 180915260 + 137575686 137575956 AluSp 311 + 8 269 118625 119 10 1 141 chain 29383 chr5 180915260 + 137585573 137585883 AluYg6 310 + 0 310 87156 310 chain 84904 chr5 180915260 + 137603527 137606379 L1PB1 5432 + 4168 5413 41552 19 2 0 151 295 0 87 0 1 25 6 1 174 357 0 70 0 4 227 613 0 163 20 27 21 1 0 9 345 20 53 2 1 16 1 0 44 1 0 7 0 1 7 3 0 7 14 6 18 24 19 24 1 0 21 1 0 13 1 0 9 chain 23527 chr5 180915260 + 137603708 137603994 AluSx1 309 + 17 303 112976 286 chain 6051 chr5 180915260 + 137646630 137647000 L1MB2 1706 + 333 645 184798 14 0 5 47 256 206 10 13 0 30 chain 5816 chr5 180915260 + 137652636 137652708 MER52D 1964 + 1892 1964 186994 72 chain 33247 chr5 180915260 + 137694484 137694849 L1PA3long 6157 - 0 365 78807 365 chain 12446 chr5 180915260 + 137698442 137698582 L1PA5 6144 - 13 156 150473 92 0 3 48 chain 24681 chr5 180915260 + 137703433 137703720 AluSg 306 + 12 299 106545 287 chain 23712 chr5 180915260 + 137724053 137724353 AluY 311 + 14 305 111967 118 0 1 98 17 8 42 2 1 23 chain 3916 chr5 180915260 + 137744615 137744664 MER106A 234 + 102 153 208617 36 0 2 13 chain 22457 chr5 180915260 + 137745509 137745804 AluSp 311 + 15 307 118215 247 1 3 12 10 5 25 chain 90621 chr5 180915260 + 137746197 137747201 LTR13 1007 - 0 1007 39416 81 0 2 858 0 1 65 chain 4038 chr5 180915260 + 137812700 137812814 L1MB7 1623 + 1305 1415 206802 20 1 0 10 52 49 31 chain 11842 chr5 180915260 + 137820816 137820964 FAM 185 + 17 166 152860 126 0 1 22 chain 25760 chr5 180915260 + 137831664 137831964 AluSp 311 - 9 311 101041 25 0 2 275 chain 22832 chr5 180915260 + 137858786 137859073 AluSc 308 + 11 295 116433 246 2 1 23 2 0 14 chain 2829 chr5 180915260 + 137867056 137867086 MSTD 398 + 356 386 228222 30 chain 25583 chr5 180915260 + 137897633 137897925 AluSc 308 - 16 308 101807 292 chain 24823 chr5 180915260 + 137911863 137912156 AluY 311 + 0 299 105752 8 0 6 26 1 0 92 1 2 165 chain 5584 chr5 180915260 + 137953026 137953129 MER65A 464 - 0 100 189241 16 4 6 22 4 5 32 6 0 19 chain 9187 chr5 180915260 + 137959166 137959274 U13_ 108 + 0 108 164619 108 chain 6846 chr5 180915260 + 137961597 137961689 Charlie1a 1436 - 1276 1369 178623 71 3 4 18 chain 3948 chr5 180915260 + 137963905 137964066 MIR 256 - 27 169 208152 18 50 29 31 40 42 22 chain 5388 chr5 180915260 + 137989112 137989260 Arthur1A 176 - 11 159 191113 42 1 0 21 67 68 17 chain 555888 chr5 180915260 + 138014377 138020516 L1PA4 6152 - 11 6152 735 1962 0 1 668 1 0 20 0 1 2373 0 1 1115 chain 8233 chr5 180915260 + 138023604 138023718 MLT1C 463 + 2 116 169762 18 1 2 32 1 0 62 chain 17391 chr5 180915260 + 138027831 138028554 L1MA5 2750 - 831 1129 134531 140 484 59 99 chain 17488 chr5 180915260 + 138029970 138030209 MER39 703 - 197 438 134294 118 8 10 113 chain 5102 chr5 180915260 + 138047336 138047398 Tigger9b 617 - 536 598 194066 62 chain 24048 chr5 180915260 + 138105220 138105507 AluSp 311 - 11 297 110053 146 2 1 139 chain 163567 chr5 180915260 + 138111734 138113595 SVA_D 2077 - 0 2077 22869 253 5 6 198 1 0 78 0 225 263 2 1 15 2 4 87 11 0 30 2 1 13 1 0 886 0 3 14 chain 24975 chr5 180915260 + 138115878 138116181 AluYk4 311 - 11 311 104937 74 0 1 93 4 0 132 chain 25237 chr5 180915260 + 138116957 138117264 AluY 311 + 0 303 103552 84 5 0 153 0 1 65 chain 28044 chr5 180915260 + 138120753 138121049 AluYa5 310 - 14 310 92842 296 chain 8351 chr5 180915260 + 138127542 138127642 L1PA5 6144 - 0 100 169115 100 chain 122798 chr5 180915260 + 138146242 138147651 SVA_D 2077 - 261 2071 30117 118 0 2 183 1 352 123 0 2 33 0 1 9 0 2 30 0 1 10 12 54 410 1 0 313 1 0 153 0 1 4 0 1 8 chain 40428 chr5 180915260 + 138170468 138170952 LTR7B 505 - 0 505 68695 248 2 1 7 0 22 227 chain 29141 chr5 180915260 + 138213126 138213435 AluYb8 318 - 9 318 88358 309 chain 12065 chr5 180915260 + 138294264 138294413 Tigger4a 237 + 22 169 151922 126 2 0 21 chain 4968 chr5 180915260 + 138301137 138301192 MER94 134 - 1 56 195499 55 chain 2702 chr5 180915260 + 138301656 138301711 MER94 134 + 78 133 230208 13 14 14 28 chain 7075 chr5 180915260 + 138328364 138328556 L1PB1 5432 + 5260 5430 176914 15 6 5 16 1 0 15 8 0 15 25 18 26 1 0 23 13 11 18 1 0 4 1 0 4 chain 27028 chr5 180915260 + 138332514 138333255 L1MA4 2864 - 992 1408 96192 66 12 9 25 309 15 67 2 0 192 40 14 28 chain 4300 chr5 180915260 + 138334845 138334899 MSTB 430 - 376 430 203207 54 chain 560105 chr5 180915260 + 138341143 138347175 L1PA2 6032 - 3 6029 350 1148 6 0 4878 chain 22533 chr5 180915260 + 138349802 138350072 AluSp 311 + 28 298 117879 270 chain 6067 chr5 180915260 + 138371979 138372120 L1PREC2 3366 - 318 440 184693 38 9 7 32 22 8 11 4 1 25 chain 151488 chr5 180915260 + 138391320 138393021 SVA_D 2077 + 0 2077 24398 19 5 0 668 0 40 191 0 36 51 0 305 78 0 1 4 18 17 667 chain 80808 chr5 180915260 + 138418991 138419851 L1HS 6032 - 624 1484 43263 860 chain 59512 chr5 180915260 + 138419851 138420484 L1HS 6032 + 5397 6030 53097 633 chain 115402 chr5 180915260 + 138433087 138435325 L1MA2 4263 + 2520 4105 32640 49 0 7 18 312 0 50 3 0 6 0 1 15 3 11 20 5 0 160 0 1 49 2 3 171 0 1 479 26 20 23 327 0 57 4 3 52 5 0 90 3 0 19 0 1 14 3 4 122 1 0 25 0 1 39 5 4 23 22 11 36 chain 4958 chr5 180915260 + 138443042 138443346 L1MC4a 1092 - 0 256 195600 35 148 114 25 67 53 29 chain 132454 chr5 180915260 + 138447515 138448979 SVA_C 1631 + 16 1608 27535 14 2 1 771 2 129 4 0 1 67 0 1 604 chain 23115 chr5 180915260 + 138488518 138488798 AluSp 311 - 27 303 115062 33 5 1 242 chain 54341 chr5 180915260 + 138500460 138501842 MER4E 760 + 0 760 56139 21 0 3 127 11 14 44 0 1 14 3 0 22 2 0 25 11 4 94 0 2 73 1 0 40 0 4 80 623 0 155 3 2 25 0 2 8 chain 165920 chr5 180915260 + 138505522 138507404 SVA_D 2077 + 0 2077 22524 13 5 6 749 2 1 127 12 54 10 0 1 30 0 2 7 6 58 245 0 98 676 chain 25550 chr5 180915260 + 138524849 138525235 MER1A 529 + 0 408 101989 19 33 51 10 17 17 270 0 4 37 chain 6820 chr5 180915260 + 138528878 138528959 MER106A 234 + 70 151 178798 81 chain 10486 chr5 180915260 + 138546859 138547003 Tigger3c 601 - 105 250 158306 28 12 13 104 chain 3016 chr5 180915260 + 138552512 138552545 LTR2 463 - 430 463 224683 33 chain 39212 chr5 180915260 + 138553312 138554143 MER9a3 513 - 0 513 70442 77 323 2 129 0 1 48 1 0 69 7 8 159 0 2 18 chain 122190 chr5 180915260 + 138559590 138561269 SVA_D 2077 + 58 2056 30310 245 0 1 247 0 40 247 0 575 463 307 0 21 0 10 149 chain 11362 chr5 180915260 + 138566562 138566761 LTR23 429 + 154 333 154849 49 0 1 33 13 7 21 9 4 12 10 0 52 chain 21468 chr5 180915260 + 138574680 138575166 LTR26B 539 + 0 394 122265 42 6 11 128 130 30 29 49 52 102 chain 24371 chr5 180915260 + 138580024 138580320 AluY 311 + 11 301 108245 30 9 1 89 0 2 168 chain 29559 chr5 180915260 + 138586326 138586649 AluYb8 318 - 0 317 86380 186 6 0 131 chain 9702 chr5 180915260 + 138612037 138612198 MER30 238 - 15 182 162078 28 3 0 52 0 1 7 3 0 9 5 21 6 5 0 43 chain 20239 chr5 180915260 + 138627234 138627527 AluSp 311 - 20 311 126414 57 8 7 69 27 26 132 chain 12413 chr5 180915260 + 138683304 138683437 L1PA3long 6157 + 6020 6153 150587 133 chain 16882 chr5 180915260 + 138717070 138717322 AluSp 311 + 10 302 135885 38 15 74 66 19 0 114 chain 7969 chr5 180915260 + 138774021 138774170 MER30 238 + 90 238 171224 19 4 0 7 40 43 79 chain 23548 chr5 180915260 + 138776760 138777044 AluSc5 308 - 24 308 112865 284 chain 5525 chr5 180915260 + 138783595 138783659 U5 65 + 0 64 189787 64 chain 24089 chr5 180915260 + 138865194 138865476 AluSc5 308 - 19 298 109807 5 3 0 274 chain 58586 chr5 180915260 + 138882527 138883358 LTR12 884 + 0 884 53650 55 0 41 24 0 25 84 0 2 59 0 88 345 103 0 161 chain 474031 chr5 180915260 + 138883386 138889165 HERV9-int 5642 + 0 5642 7909 294 0 3 237 7 3 134 43 0 18 1 9 97 1 0 308 83 0 173 0 2 556 0 9 99 0 1 518 0 1 52 0 7 203 0 1 156 4 0 1174 0 1 1173 1 0 228 9 7 26 9 8 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 57851 chr5 180915260 + 138890851 138891987 LTR12 884 + 0 884 54063 110 301 128 54 1 3 61 0 22 345 103 0 161 chain 17246 chr5 180915260 + 138894865 138895079 AluSp 311 + 0 209 134937 33 13 8 168 chain 21745 chr5 180915260 + 138900356 138900617 AluY 311 + 38 300 121225 94 0 1 167 chain 34232 chr5 180915260 + 138905457 138905931 LTR2B 499 + 9 499 77308 5 1 0 60 3 0 37 0 20 114 0 1 4 6 0 7 1 0 4 0 6 37 7 8 5 1 0 182 chain 44936 chr5 180915260 + 138907401 138907921 Harlequin-int 5206 + 1719 2254 63130 10 0 9 222 1 7 287 chain 32325 chr5 180915260 + 138910678 138911149 LTR2B 499 + 9 499 80316 5 1 0 60 14 11 26 7 26 108 0 1 4 5 4 50 7 8 5 1 0 131 0 4 47 chain 19980 chr5 180915260 + 138929532 138929962 LTR12C 1709 + 671 981 127210 34 42 1 43 2 17 7 11 0 64 42 0 117 48 7 20 chain 3052 chr5 180915260 + 138929736 138929777 LTR12C 1709 + 837 878 184977 41 chain 6735 chr5 180915260 + 138934486 138934566 HY3 101 - 1 81 179430 80 chain 5423 chr5 180915260 + 138950481 138950547 MER41A 554 - 88 155 190780 38 0 1 28 chain 23928 chr5 180915260 + 138959354 138959646 AluSx3 311 + 4 298 110764 122 0 1 90 0 1 80 chain 13999 chr5 180915260 + 138961048 138962219 Tigger4b 360 - 1 302 144583 62 2 1 26 5 0 60 892 28 35 42 43 42 1 0 4 chain 58191 chr5 180915260 + 138966570 138967614 LTR17 781 - 9 780 53872 22 1 23 174 1 0 7 0 1 205 299 0 13 0 1 17 10 0 181 0 9 86 0 4 28 chain 21977 chr5 180915260 + 138966993 138967279 AluY 311 + 10 304 120329 122 0 2 21 14 20 129 chain 23437 chr5 180915260 + 138999174 138999457 AluSp 311 + 8 291 113436 55 0 1 68 1 0 159 chain 23849 chr5 180915260 + 139094470 139094770 AluSc5 308 - 4 307 111190 176 3 6 121 chain 27825 chr5 180915260 + 139097807 139098162 THE1A 353 + 0 353 93605 109 2 1 89 1 0 154 chain 128958 chr5 180915260 + 139098162 139101268 THE1A-int 1579 + 0 1573 28320 15 0 2 247 923 0 737 0 8 397 620 0 167 chain 23387 chr5 180915260 + 139101276 139101595 THE1A 353 + 2 320 113722 108 1 0 7 2 3 82 1 0 26 0 1 5 1 0 86 chain 23972 chr5 180915260 + 139102740 139103020 AluSg7 307 - 27 307 110494 280 chain 2611 chr5 180915260 + 139139517 139139565 MIRc 230 - 110 158 231534 22 10 10 16 chain 7872 chr5 180915260 + 139153106 139153265 L1MB3 1562 - 149 312 171858 60 1 0 33 48 53 17 chain 7063 chr5 180915260 + 139158740 139158852 L1PB1 5432 - 12 117 177002 16 1 0 13 1 0 45 2 0 14 1 0 5 2 0 12 chain 10209 chr5 180915260 + 139198271 139198399 MER85 139 - 0 139 159572 34 0 11 94 chain 24384 chr5 180915260 + 139207152 139207490 THE1D 372 - 0 357 108173 35 2 1 91 1 7 45 6 9 77 0 1 25 1 11 55 chain 7467 chr5 180915260 + 139223929 139224015 Charlie7a 264 - 74 160 174365 86 chain 3340 chr5 180915260 + 139287558 139287619 MIRb 242 - 73 131 218218 23 11 8 27 chain 81866 chr5 180915260 + 139323916 139325261 L1MA5A 2387 - 92 1538 42815 63 27 0 15 3 0 13 1 0 23 2 0 22 7 5 47 1 0 38 3 2 29 10 9 74 44 48 161 0 3 161 2 0 13 21 19 44 1 0 4 10 11 64 13 12 48 0 11 98 0 93 13 0 1 74 0 1 69 32 65 56 2 0 37 chain 123128 chr5 180915260 + 139357061 139358817 L1PA8 5853 + 4227 5853 29998 782 2 0 357 169 29 169 1 0 25 8 7 13 3 1 55 0 1 16 1 0 7 1 0 11 0 2 5 2 0 29 15 30 28 0 2 57 chain 3289 chr5 180915260 + 139364066 139364102 U6 107 - 70 106 219180 36 chain 4321 chr5 180915260 + 139366278 139366439 MER3 215 - 6 168 202944 23 0 1 10 95 95 33 chain 17063 chr5 180915260 + 139453746 139453948 AluSp 311 + 93 295 135419 202 chain 5434 chr5 180915260 + 139459189 139459252 LTR69 548 + 7 70 190661 63 chain 7340 chr5 180915260 + 139463331 139463570 MER96B 391 + 57 291 175158 47 128 123 46 0 1 13 1 0 4 chain 4963 chr5 180915260 + 139475677 139475731 L1PA5 6144 - 12 66 195553 54 chain 53159 chr5 180915260 + 139479671 139480459 L1MA5A 2387 - 98 865 56917 59 27 0 15 3 0 23 6 5 32 2 0 48 1 0 38 1 0 36 17 6 110 0 8 115 11 14 46 1 0 7 0 10 81 1 0 69 9 15 30 chain 24452 chr5 180915260 + 139482714 139483331 L1MA4 2864 - 55 723 107793 37 3 0 5 1 2 21 75 60 13 3 0 25 37 112 35 15 16 63 12 13 72 4 1 23 19 21 54 13 11 14 24 21 49 chain 3613 chr5 180915260 + 139540148 139540215 MADE1 96 - 12 95 213437 25 12 28 30 chain 114632 chr5 180915260 + 139578399 139580066 L1PA7 6471 - 1 1360 32908 4 1 0 93 0 8 53 1 0 504 316 0 114 0 1 76 4 7 92 10 8 399 chain 5793 chr5 180915260 + 139603544 139603637 LTR47A 437 - 67 174 187233 63 0 6 9 9 17 12 chain 25361 chr5 180915260 + 139603714 139604013 AluSp 311 - 11 301 102881 11 9 0 279 chain 10528 chr5 180915260 + 139643168 139643324 MSTB 430 - 11 169 158137 91 11 14 23 1 0 30 chain 18534 chr5 180915260 + 139652627 139652854 AluSx4 309 + 79 302 131416 6 1 0 212 3 0 5 chain 23670 chr5 180915260 + 139659327 139659609 AluSp 311 + 28 311 112200 11 0 1 271 chain 12934 chr5 180915260 + 139685685 139686744 MLT1C 463 + 7 455 148485 73 879 266 38 0 2 69 chain 25102 chr5 180915260 + 139706239 139706541 AluSp 311 - 9 310 104278 125 1 0 176 chain 25241 chr5 180915260 + 139737702 139738029 AluY 311 + 0 310 103522 14 0 1 102 1 4 9 21 0 180 chain 49034 chr5 180915260 + 139795381 139795946 L1PA5 6144 - 7 572 59724 565 chain 11469 chr5 180915260 + 139798762 139799024 L1MB7 1623 - 440 687 154427 92 0 3 21 109 91 40 chain 174224 chr5 180915260 + 139806123 139808266 SVA_D 2077 - 21 2071 21570 611 1 0 44 4 0 13 24 0 4 1 0 75 24 53 10 50 0 208 0 2 78 55 15 25 2 0 10 2 0 147 3 0 34 0 3 718 chain 3727 chr5 180915260 + 139806934 139806984 SVA_D 2077 - 1058 1106 92121 33 2 0 15 chain 3000 chr5 180915260 + 139807283 139807325 SVA_D 2077 - 778 820 127639 42 chain 5218 chr5 180915260 + 139818888 139818971 MER30 238 - 0 83 192844 13 1 2 24 3 0 35 0 2 7 chain 522427 chr5 180915260 + 139831546 139837446 L1PA5 6144 + 3 6141 4915 88 0 217 558 0 2 547 0 5 925 1 0 34 0 4 208 1 0 573 1 0 6 2 0 82 0 2 887 0 1 202 0 4 504 1 0 121 0 5 319 0 4 840 chain 23196 chr5 180915260 + 139842049 139842327 AluY 311 + 22 300 114692 101 1 0 9 0 1 167 chain 23624 chr5 180915260 + 139886903 139887181 AluSp 311 - 23 301 112443 278 chain 492563 chr5 180915260 + 139895036 139900516 L1PA3long 6157 + 0 6149 7241 94 0 526 86 7 0 73 1 129 657 0 2 138 1 6 1466 1 0 89 0 4 621 0 1 71 0 2 383 1 9 280 1 2 1369 1 0 98 0 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180915260 + 140009968 140010024 MLT1A 405 - 28 80 213326 17 0 1 23 5 0 11 chain 21479 chr5 180915260 + 140013374 140013661 AluSg7 307 - 9 296 122225 141 20 20 5 0 1 13 1 0 107 chain 38911 chr5 180915260 + 140017607 140018128 LTR10D 510 - 2 508 70852 27 1 0 217 7 9 24 1 0 90 16 0 33 0 8 20 13 6 72 chain 10923 chr5 180915260 + 140018478 140018616 MER4B 649 + 493 632 156517 30 0 1 38 1 0 17 0 1 52 chain 9292 chr5 180915260 + 140061280 140061464 MLT1B 390 + 229 390 164103 29 59 36 96 chain 18042 chr5 180915260 + 140090016 140090241 AluSz 310 + 14 292 132753 125 3 54 78 0 2 19 chain 10887 chr5 180915260 + 140119025 140119245 L1PB1 5432 + 5225 5422 156632 11 1 0 45 1 0 15 25 12 19 22 17 26 1 0 21 1 0 13 1 0 18 chain 4541 chr5 180915260 + 140126667 140126724 Tigger2b_Pri 1066 - 248 305 200330 57 chain 131686 chr5 180915260 + 140128117 140130087 L1PREC2 3366 - 299 2194 27704 4 1 0 4 1 0 11 2 0 38 6 4 35 45 19 4 0 1 25 4 2 14 6 1 17 29 21 14 7 3 44 19 18 36 2 0 41 2 0 30 0 1 79 6 0 240 0 4 69 0 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163 9 7 206 0 1 11 0 12 209 58 59 220 2 0 40 7 6 22 2 0 61 7 12 11 0 3 82 171 0 38 16 10 173 chain 449558 chr5 180915260 + 140285805 140291475 HERVL-int 5654 - 0 5654 8779 168 1 4 116 0 1 56 1 0 84 0 1 95 0 7 179 2 0 1141 0 1 128 2 4 49 1 2 509 0 1 129 13 20 132 0 2 595 26 23 158 0 18 99 3 4 20 0 1 72 78 23 79 4 3 223 8 18 446 9 1 209 1 0 184 1 0 186 10 10 453 chain 10321 chr5 180915260 + 140305112 140305226 L1PA5 6144 + 6014 6128 159025 114 chain 22479 chr5 180915260 + 140320920 140321187 AluSg7 307 - 28 295 118115 267 chain 25802 chr5 180915260 + 140332325 140332717 MSTA 426 - 21 426 100858 9 0 2 85 1 0 60 30 22 21 2 0 62 15 36 32 0 1 75 chain 149721 chr5 180915260 + 140333883 140336404 L1PA11 4918 - 289 2410 24658 17 62 46 12 4 3 11 14 10 10 13 18 13 1 0 17 12 10 55 2 0 13 2 1 63 5 0 277 18 16 257 27 24 30 0 1 40 377 0 90 19 25 529 2 0 321 1 2 48 5 8 154 chain 26943 chr5 180915260 + 140334863 140335235 THE1C 375 + 0 375 96474 109 14 15 51 0 1 5 5 6 188 chain 25294 chr5 180915260 + 140352245 140352545 AluSc 308 - 7 307 103253 300 chain 4694 chr5 180915260 + 140371480 140371571 MLT1D 503 - 410 502 198587 43 19 21 5 1 0 23 chain 16187 chr5 180915260 + 140373300 140373543 Tigger3a 397 + 139 397 137798 9 0 10 42 1 3 122 25 28 44 chain 28092 chr5 180915260 + 140385019 140385316 AluYg6 310 + 13 310 92677 297 chain 34814 chr5 180915260 + 140404232 140404612 L1PA3long 6157 + 5777 6157 76451 380 chain 30001 chr5 180915260 + 140455869 140456185 AluYb8 318 + 0 316 84806 316 chain 29390 chr5 180915260 + 140483599 140483906 AluYa5 310 - 3 310 87121 307 chain 277409 chr5 180915260 + 140490962 140494101 L1PA4 6152 - 12 3180 14783 15 0 1 129 0 3 139 0 29 523 2 0 1177 0 1 827 5 4 120 3 1 199 chain 85754 chr5 180915260 + 140608895 140609832 L1PA2 6032 - 1 939 41245 545 0 1 392 chain 52904 chr5 180915260 + 140637265 140637906 L1PA6 6164 - 3 656 57079 131 7 13 312 0 6 191 chain 3007 chr5 180915260 + 140640350 140640383 MLT2B2 565 + 530 563 224914 33 chain 13083 chr5 180915260 + 140648368 140648521 AluYk4 311 - 1 149 147911 46 5 0 102 chain 25107 chr5 180915260 + 140662276 140662648 L1MA4 2864 - 304 669 104244 61 3 2 14 2 0 86 0 1 61 4 1 90 14 12 37 chain 55457 chr5 180915260 + 140677530 140678339 LTR25 836 - 0 836 55431 86 0 14 159 0 1 23 24 0 22 0 95 207 60 1 87 0 1 20 1 0 120 chain 68507 chr5 180915260 + 140690046 140690847 L1PA5 6144 - 0 810 49035 11 1 2 220 9 11 127 2 0 33 0 8 398 chain 29258 chr5 180915260 + 140756243 140756553 AluYb9 318 - 9 318 87749 183 1 0 126 chain 37898 chr5 180915260 + 140813900 140814339 MER9a2 513 + 0 439 72289 439 chain 24581 chr5 180915260 + 140828225 140828504 AluY 311 + 0 275 107077 126 4 0 149 chain 31043 chr5 180915260 + 140834894 140835418 LTR9B 643 - 81 621 82448 99 0 6 6 32 30 141 1 0 31 1 0 16 7 8 17 5 7 11 7 8 66 0 34 14 25 1 45 chain 82304 chr5 180915260 + 140836636 140837788 HUERS-P3b-int 2065 - 34 1164 42623 59 0 2 29 1 0 58 5 1 45 25 22 14 2 0 72 3 1 40 8 7 42 7 0 25 1 0 13 2 0 80 12 10 40 1 0 85 0 1 164 1 2 318 chain 10686 chr5 180915260 + 140837808 140837970 LTR9B 643 - 0 160 157466 37 20 18 105 chain 40922 chr5 180915260 + 140845928 140846474 HSMAR2 1300 - 742 1292 68006 74 0 4 73 4 3 339 1 0 13 5 7 37 chain 8683 chr5 180915260 + 140923917 140924553 L1ME1 1623 + 808 1404 167284 5 1 0 10 10 11 26 367 336 12 1 0 83 93 85 28 chain 28411 chr5 180915260 + 140952721 140953023 AluYg6 310 + 0 302 91533 302 chain 27327 chr5 180915260 + 140980478 140980804 L1PA5 6144 + 5818 6144 95184 326 chain 6075 chr5 180915260 + 141047977 141048057 MER5C 305 - 154 236 184612 12 0 2 68 chain 13402 chr5 180915260 + 141093031 141093181 L1PA4 6152 - 10 160 146702 150 chain 26336 chr5 180915260 + 141105631 141106256 MSTA-int 1630 - 1287 1630 98671 285 282 0 58 chain 26579 chr5 180915260 + 141106576 141106966 MSTA 426 - 39 426 97726 77 17 16 5 0 1 79 8 5 48 0 4 20 3 0 106 1 0 26 chain 6383 chr5 180915260 + 141112730 141112813 MLT1C 463 + 40 123 182158 83 chain 14457 chr5 180915260 + 141155265 141155489 MER1B 344 + 113 335 143025 13 7 12 125 25 18 54 chain 3968 chr5 180915260 + 141184898 141184946 MIRc 230 + 84 132 207861 48 chain 24781 chr5 180915260 + 141280692 141280975 AluSp 311 - 17 300 105988 283 chain 23212 chr5 180915260 + 141317057 141317358 AluY 311 + 4 305 114631 129 8 6 10 5 7 149 chain 6757 chr5 180915260 + 141342805 141342892 MER53 195 + 2 91 179271 76 0 2 11 chain 8698 chr5 180915260 + 141399824 141399926 L1MB2 1706 - 248 350 167203 102 chain 30830 chr5 180915260 + 141416799 141417226 MER57A1 433 - 0 433 82810 111 19 22 16 15 17 49 0 1 217 chain 20176 chr5 180915260 + 141417241 141417690 L1MB3 1562 + 1149 1555 126601 16 6 0 36 1 0 10 4 0 140 41 32 36 70 45 19 3 0 36 15 20 16 chain 112921 chr5 180915260 + 141420995 141422214 L1PA3long 6157 - 0 1219 33372 1219 chain 198940 chr5 180915260 + 141422214 141424363 L1PA3long 6157 + 2784 4933 19282 2149 chain 3499 chr5 180915260 + 141429489 141429655 MER3 215 + 24 114 215362 14 38 30 34 68 0 12 chain 7061 chr5 180915260 + 141451859 141451968 MER34A1 583 + 0 110 177029 41 1 0 38 4 7 18 1 0 6 chain 164449 chr5 180915260 + 141454225 141456891 SVA_F 1814 - 0 1809 22753 326 0 15 286 1 0 10 5 0 172 1 0 4 1 0 39 0 15 49 879 0 893 chain 4336 chr5 180915260 + 141455119 141455177 SVA_F 1814 - 725 809 153322 7 14 39 4 0 1 33 chain 3695 chr5 180915260 + 141455178 141455221 SVA_F 1814 - 682 725 156207 43 chain 6938 chr5 180915260 + 141455245 141455320 SVA_F 1814 - 776 852 177908 37 0 1 38 chain 4600 chr5 180915260 + 141455321 141455374 SVA_F 1814 - 868 921 199633 53 chain 31485 chr5 180915260 + 141455409 141455932 SVA_F 1814 - 540 899 81667 286 179 0 25 0 15 33 chain 2092 chr5 180915260 + 141455695 141455717 SVA_F 1814 - 699 721 178597 22 chain 4175 chr5 180915260 + 141455723 141455768 SVA_F 1814 - 867 912 204915 45 chain 9543 chr5 180915260 + 141455773 141455874 SVA_F 1814 - 676 777 136585 101 chain 2133 chr5 180915260 + 141455960 141455983 SVA_F 1814 - 928 951 237353 23 chain 45481 chr5 180915260 + 141468324 141468871 LTR14 556 - 0 556 62515 110 1 2 16 0 1 31 7 11 284 0 3 98 chain 5146 chr5 180915260 + 141477863 141477931 MER34C_ 573 - 46 114 193588 9 0 1 33 1 0 25 chain 7072 chr5 180915260 + 141480410 141480521 LTR48 738 + 401 507 176935 7 1 0 12 11 7 80 chain 6891 chr5 180915260 + 141487704 141487821 MER58B 340 - 3 181 178275 62 17 78 38 chain 25009 chr5 180915260 + 141616088 141616440 LTR2 463 - 0 341 104739 88 12 13 119 30 18 103 chain 22243 chr5 180915260 + 141627467 141627798 MER47A 366 + 7 330 119158 35 26 25 167 7 0 37 1 0 4 0 1 54 chain 5551 chr5 180915260 + 141631253 141631323 MER58A 224 - 105 175 189561 70 chain 42877 chr5 180915260 + 141643508 141643986 L1PA5 6144 - 0 478 65561 478 chain 22249 chr5 180915260 + 141648697 141649026 LTR9B 643 - 256 638 119123 47 14 23 91 0 1 17 16 18 48 0 1 17 0 37 14 0 3 65 chain 3410 chr5 180915260 + 141680682 141680729 L1MD3 1191 - 432 478 216925 25 1 0 21 chain 10948 chr5 180915260 + 141727641 141728742 L1MA5 2750 + 2185 2661 156410 51 905 284 44 2 1 47 1 0 19 1 0 13 5 4 13 chain 5652 chr5 180915260 + 141751571 141751654 MLT2B1 522 - 436 521 188550 18 8 10 57 chain 24577 chr5 180915260 + 141762890 141763185 AluY 311 + 0 293 107094 10 3 0 122 0 1 160 chain 2874 chr5 180915260 + 141774020 141774051 tRNA-Asp-GAY 44 - 5 36 227472 31 chain 39121 chr5 180915260 + 141883531 141884050 MLT2A2 560 + 0 560 70573 180 2 0 125 9 41 54 5 16 144 chain 23400 chr5 180915260 + 141895155 141895422 L1PA4 6152 - 1 268 113644 267 chain 13861 chr5 180915260 + 141899483 141899791 L1PB1 5432 - 123 401 145031 13 8 5 10 1 0 45 1 0 15 2 1 50 4 2 9 2 0 3 2 0 13 1 0 4 2 1 24 50 34 49 chain 13534 chr5 180915260 + 141938835 141939099 MER39B 650 - 388 650 146234 8 3 0 13 1 0 53 35 0 15 25 61 32 0 1 79 chain 28344 chr5 180915260 + 141998494 141998798 AluYk11 308 - 4 308 91785 304 chain 3280 chr5 180915260 + 142005949 142005994 MADE1 96 - 50 96 219350 19 1 2 25 chain 39209 chr5 180915260 + 142027767 142028232 L1PA7 6471 + 6005 6470 70445 57 10 11 16 2 1 380 chain 22802 chr5 180915260 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35 chain 10045 chr5 180915260 + 142091717 142091832 THE1C 375 - 260 375 160349 115 chain 40390 chr5 180915260 + 142117948 142118633 L1PB1 5432 - 10 664 68756 11 0 1 6 1 0 8 8 7 19 1 0 24 2 0 15 1 0 4 2 0 19 16 6 6 2 0 15 1 0 45 18 16 52 2 0 9 5 1 14 3 2 4 1 0 18 19 17 286 13 14 35 chain 7970 chr5 180915260 + 142129968 142130069 MER45A 178 + 51 152 171221 101 chain 91220 chr5 180915260 + 142344334 142345341 LTR13 1007 - 0 1007 39227 1007 chain 524193 chr5 180915260 + 142365090 142371155 L1PA5 6144 - 18 6144 4749 137 1 0 341 1 0 5 0 1 348 1 0 122 1 0 25 0 5 388 0 1 89 0 1 67 0 8 904 0 3 8 1 0 187 0 4 264 1 0 4 0 1 961 0 16 231 4 24 175 0 2 634 18 9 1012 0 14 135 chain 29184 chr5 180915260 + 142372723 142373033 AluYb8 318 - 8 318 88127 310 chain 104596 chr5 180915260 + 142374469 142375761 L1PA7 6471 + 5187 6465 35599 85 0 12 337 0 3 31 0 4 21 3 0 22 2 1 536 30 0 45 0 1 180 chain 3271 chr5 180915260 + 142378336 142378372 MER82 654 + 435 471 219582 36 chain 42025 chr5 180915260 + 142380069 142380602 L1PA8 5853 + 5327 5847 66592 43 10 4 190 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 87 chain 35017 chr5 180915260 + 142383443 142383885 MER57A1 433 - 4 433 76166 139 13 0 290 chain 2794 chr5 180915260 + 142401980 142402016 MER58A 224 - 13 48 228817 9 1 0 26 chain 19685 chr5 180915260 + 142414816 142415218 L1PB1 5432 + 5027 5398 128143 75 1 0 12 1 0 13 8 7 22 7 3 10 3 1 50 2 1 15 1 0 44 1 0 15 1 0 5 48 34 12 2 0 27 1 0 20 1 0 5 chain 13106 chr5 180915260 + 142450025 142450192 L1MA5A 2387 + 703 870 147825 167 chain 42093 chr5 180915260 + 142468160 142468686 LTR10F 562 - 5 562 66505 321 3 6 94 1 29 107 chain 202951 chr5 180915260 + 142468982 142471717 HERVIP10FH-int 2884 - 60 2735 19000 35 10 4 13 1 0 17 1 0 5 9 8 34 5 4 65 1 0 264 7 6 95 1 0 20 4 3 104 0 14 83 1 0 261 2 1 24 1 0 3 10 0 42 19 7 43 6 4 13 7 1 12 57 43 51 16 18 57 6 1 63 1 0 9 1 0 5 19 13 171 2 0 9 0 2 220 1 2 42 0 2 442 0 3 86 6 0 192 2 0 59 chain 39596 chr5 180915260 + 142474072 142474576 LTR10F 562 - 0 562 69893 78 11 9 201 0 1 11 0 59 203 chain 50323 chr5 180915260 + 142482843 142483505 L1PA7 6471 + 5794 6461 58769 295 4 1 95 0 3 14 4 3 96 38 40 73 0 4 43 chain 16203 chr5 180915260 + 142498332 142498516 L1PA4 6152 + 5969 6152 137741 165 1 0 18 chain 16056 chr5 180915260 + 142560065 142560389 THE1C 375 - 20 375 138198 111 64 69 36 0 4 6 9 21 28 16 26 54 chain 27740 chr5 180915260 + 142581473 142581857 L1P3 4156 - 1180 1549 93904 79 0 3 16 2 3 139 23 0 63 0 2 41 1 3 20 chain 151778 chr5 180915260 + 142581860 142583643 L1PA7 6471 + 4690 6470 24366 117 2 1 64 12 1 146 0 1 538 0 4 61 0 1 86 2 1 542 0 4 213 chain 32383 chr5 180915260 + 142643289 142643729 MER4A1 472 - 0 472 80219 60 7 17 130 1 0 13 5 26 117 11 13 96 chain 17690 chr5 180915260 + 142672683 142673076 L1PB1 5432 + 5055 5422 133726 48 1 2 9 3 0 20 1 0 8 3 2 12 2 0 3 2 0 9 12 10 39 6 5 14 1 0 43 2 1 16 17 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 9 7 6 15 chain 24932 chr5 180915260 + 142702765 142703129 THE1A 353 - 0 353 105148 9 0 1 141 1 0 21 5 2 69 2 1 19 15 8 82 chain 121309 chr5 180915260 + 142703129 142704700 THE1A-int 1579 - 0 1579 30597 138 4 0 52 0 1 8 29 1 6 3 0 6 0 6 201 0 7 214 8 9 11 1 0 327 1 0 152 0 2 171 5 6 165 0 26 43 2 3 24 chain 10713 chr5 180915260 + 142705082 142705265 MER44B 551 + 273 458 157360 114 44 46 25 chain 23949 chr5 180915260 + 142710792 142711155 L1PA15 4387 + 3958 4310 110630 145 2 1 26 1 0 54 2 1 23 4 0 7 7 6 46 6 3 40 chain 14386 chr5 180915260 + 142753021 142753184 L1PA6 6164 + 5999 6162 143249 163 chain 87829 chr5 180915260 + 142799013 142800066 MER11C 1089 - 26 1089 40436 197 0 1 127 0 1 45 0 4 302 1 0 65 0 4 60 6 7 250 chain 11413 chr5 180915260 + 142800162 142800328 MER20 218 + 53 218 154626 24 21 20 121 chain 22095 chr5 180915260 + 142803540 142803786 L1PA3long 6157 + 5910 6156 119817 246 chain 19482 chr5 180915260 + 142810978 142811227 L1PA8 5853 + 5608 5853 128712 69 1 0 11 1 0 54 1 0 14 5 4 93 chain 10316 chr5 180915260 + 142843270 142843469 MSTB2-int 240 - 5 176 159065 72 0 1 29 38 23 24 14 0 22 chain 2858 chr5 180915260 + 142858296 142858329 MSTD 398 + 125 158 227685 33 chain 47213 chr5 180915260 + 142898387 142899196 L1PREC2 3366 - 318 1096 61035 38 6 4 35 22 8 11 4 1 7 0 5 2 4 0 11 76 61 11 3 0 4 1 0 44 1 0 50 6 4 5 0 1 22 1 0 4 0 1 111 13 15 76 0 3 212 0 3 29 chain 3691 chr5 180915260 + 142907529 142907585 MLT1G3 592 - 38 97 212070 20 2 5 34 chain 23757 chr5 180915260 + 142926415 142927455 HSMAR2 1300 - 7 1297 111730 21 0 1 28 17 19 59 1 2 44 657 904 165 6 5 42 chain 33721 chr5 180915260 + 142964181 142964658 L1PB2 3958 - 120 587 78060 59 6 5 21 12 10 61 2 1 67 1 0 74 1 0 89 2 0 12 2 0 68 chain 168422 chr5 180915260 + 142988093 142990450 L1PB1 5432 + 3095 5424 22233 182 0 2 438 4 7 232 1 0 163 0 1 62 7 8 21 1 0 235 0 1 38 30 31 110 5 0 216 0 1 169 13 15 67 12 11 9 1 0 24 1 0 9 1 0 9 27 21 43 2 1 16 1 0 43 1 0 16 3 0 5 16 7 19 24 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 77133 chr5 180915260 + 143007207 143008065 L1PA4 6152 + 5294 6151 44896 517 0 1 184 3 0 42 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221 2 1 103 2 3 38 6 0 21 3 4 90 0 3 30 4 9 381 0 1 41 2 1 589 0 1 875 0 2 963 0 1 1166 0 5 731 6 7 770 chain 58566 chr5 180915260 + 143246332 143247078 L1PA8A 6298 - 7 738 53664 82 10 1 444 10 4 200 chain 24670 chr5 180915260 + 143284085 143284381 AluYf4 310 - 20 310 106607 245 6 0 45 chain 10478 chr5 180915260 + 143305773 143305895 HERVH-int 3825 + 3243 3365 158353 122 chain 8317 chr5 180915260 + 143315919 143316021 L1MA2 4263 + 3441 3543 169291 102 chain 165726 chr5 180915260 + 143321370 143323799 L1PB1 5432 - 17 2338 22543 11 1 0 13 1 0 21 1 0 24 2 0 13 9 6 12 1 0 6 18 7 6 3 0 16 1 0 44 1 0 15 2 1 50 262 23 13 1 0 20 3 0 98 6 0 300 1 2 58 0 1 32 0 2 8 0 158 308 0 1 414 6 9 320 0 1 308 chain 18292 chr5 180915260 + 143321641 143321846 L1PA4 6152 + 5946 6151 131837 205 chain 12553 chr5 180915260 + 143353648 143353782 AluYb8 318 + 184 318 150031 134 chain 52793 chr5 180915260 + 143362408 143363099 L1PA8 5853 - 0 686 57139 92 2 1 19 2 1 52 2 1 7 1 0 72 2 0 42 6 5 274 5 7 113 chain 74218 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171 208 214751 37 chain 165187 chr5 180915260 + 143721614 143723475 L1PA3long 6157 - 1476 3335 22630 464 3 0 527 0 1 426 1 0 382 5 6 53 chain 131802 chr5 180915260 + 143723475 143724925 L1PA3long 6157 + 4699 6155 27495 456 0 5 847 0 1 147 chain 19939 chr5 180915260 + 143726238 143726600 L1MA1 4479 - 289 634 127332 18 6 0 13 4 2 6 1 0 9 1 0 35 2 0 29 1 0 104 7 9 13 3 0 6 4 3 15 8 7 51 0 1 7 2 0 17 chain 41833 chr5 180915260 + 143739657 143740888 L1PA7 6471 - 3 557 66847 9 2 0 108 8 0 205 304 0 56 0 1 9 0 2 65 0 8 7 382 8 76 chain 29768 chr5 180915260 + 143740471 143740796 L1PA3long 6157 - 2 327 85583 325 chain 28039 chr5 180915260 + 143770092 143770441 L1PA7 6471 - 1 348 92856 161 0 1 167 8 5 13 chain 65805 chr5 180915260 + 143776497 143777250 L1PA5 6144 - 9 758 50192 577 11 7 165 chain 45896 chr5 180915260 + 143787104 143787707 L1PA8 5853 - 0 598 62137 6 1 0 86 2 1 19 2 1 15 0 2 35 2 1 8 1 0 67 6 4 44 1 0 125 0 1 183 chain 50764 chr5 180915260 + 143797411 143798130 LTR12_ 688 - 0 688 58455 233 5 7 27 24 14 135 0 1 128 0 1 21 28 3 118 chain 6401 chr5 180915260 + 143799899 143799973 L1PA5 6144 + 6064 6138 182014 74 chain 12721 chr5 180915260 + 143803403 143803584 MER30B 195 - 6 189 149371 34 3 0 69 5 11 41 1 0 28 chain 23970 chr5 180915260 + 143820307 143820590 L1PA4 6152 - 1 287 110510 79 0 1 54 5 7 145 chain 104697 chr5 180915260 + 143825846 143827133 L1PA7 6471 + 5187 6470 35566 434 1 0 687 1 9 6 8 0 38 0 8 6 8 0 84 2 0 7 1 0 4 chain 326818 chr5 180915260 + 143874793 143878611 L1PA5 6144 - 1 3826 12312 147 1 0 9 13 16 79 3 1 1668 1 3 5 2 0 539 8 0 76 0 1 13 0 3 328 0 2 7 0 3 189 6 7 443 0 5 281 chain 159116 chr5 180915260 + 143878611 143880491 L1PA5 6144 + 4247 6141 23380 891 6 24 129 0 4 189 2 1 5 6 0 196 1 0 455 chain 97806 chr5 180915260 + 143888326 143889407 L1PA3long 6157 - 2 1084 37333 925 0 1 156 chain 273300 chr5 180915260 + 143893898 143897078 L1P1 4361 - 20 3189 15002 12 2 1 23 1 0 157 1 0 467 8 0 522 1 0 104 4 5 1878 chain 79816 chr5 180915260 + 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405 0 1 4 1 0 32 5 6 58 0 1 337 0 1 130 2 0 506 1 0 290 1 0 54 284 0 448 0 3 66 1 0 10 24 8 163 0 1 40 2 1 581 0 1 88 0 5 365 0 1 43 6 7 114 0 4 26 0 1 775 1 2 29 0 1 4 10 9 118 1254 0 173 4 0 36 chain 28472 chr5 180915260 + 143990914 143991322 LTR7 482 - 0 482 91296 215 10 42 22 0 3 85 26 65 50 chain 277808 chr5 180915260 + 143992437 143996051 HERVH-int 3825 - 41 3825 14758 1386 0 12 130 12 6 133 0 2 14 24 29 61 1 5 429 5 0 102 1 0 44 9 0 267 71 0 369 11 280 17 0 2 11 126 89 64 1 0 78 0 6 248 chain 494462 chr5 180915260 + 144003647 144009264 L1PA4 6152 - 271 5875 7143 2372 1 0 247 0 2 83 1 0 478 0 5 721 0 1 307 4 0 432 18 1 500 0 3 380 1 0 72 chain 2297 chr5 180915260 + 144011203 144011232 MADE1 96 - 68 96 235401 4 1 0 24 chain 15902 chr5 180915260 + 144012026 144012247 L1MA1 4479 + 231 456 138646 11 0 5 35 2 0 23 1 0 4 0 1 74 0 1 71 chain 57565 chr5 180915260 + 144023396 144024093 L1PA8A 6298 - 8 705 54202 697 chain 56351 chr5 180915260 + 144052161 144052787 L1PA3long 6157 - 1 627 54933 626 chain 9023 chr5 180915260 + 144058809 144058938 L1MA5A 2387 + 1438 1562 165476 113 3 0 5 2 0 6 chain 23944 chr5 180915260 + 144064375 144064735 THE1C 375 - 2 354 110656 23 1 0 71 0 1 70 29 28 7 4 0 51 3 0 101 chain 80520 chr5 180915260 + 144065535 144066452 L1PA5 6144 - 3 926 43379 602 0 6 315 chain 44164 chr5 180915260 + 144088513 144089091 LTR12_ 688 + 0 688 63993 35 1 0 107 0 1 152 1 2 36 15 124 231 chain 22649 chr5 180915260 + 144089160 144089426 L1PA4 6152 + 5874 6139 117326 135 1 0 130 chain 452680 chr5 180915260 + 144092742 144097644 L1PA2 6032 + 830 6032 8667 97 0 300 242 1 0 4246 0 1 316 chain 104771 chr5 180915260 + 144117897 144119692 L1PA8 5853 + 4384 5853 35553 75 0 1 129 1 0 421 2 0 17 8 8 33 361 41 197 0 1 257 2 1 45 2 0 72 25 22 36 2 1 19 2 1 53 0 3 36 chain 8740 chr5 180915260 + 144120656 144120763 L1PA8A 6298 + 5830 5937 166979 107 chain 29978 chr5 180915260 + 144122964 144123282 AluYb8 318 - 0 318 84880 318 chain 75904 chr5 180915260 + 144123357 144124430 L1PA8 5853 - 0 1066 45539 93 1 0 19 63 59 74 2 0 44 1 0 169 0 4 6 6 2 38 0 9 101 2 0 225 6 0 82 1 0 5 0 1 135 chain 80054 chr5 180915260 + 144125074 144126146 L1PA7 6471 - 7 1049 43561 147 8 9 21 0 1 147 0 2 5 9 10 379 42 0 40 10 10 74 1 4 146 0 4 43 chain 97084 chr5 180915260 + 144130075 144131179 L1PA5 6144 + 5038 6144 37544 634 0 2 470 chain 2984 chr5 180915260 + 144148982 144149014 MIRb 242 + 159 191 225351 32 chain 6083 chr5 180915260 + 144165762 144165832 L1PA3long 6157 + 6087 6157 184558 70 chain 6177 chr5 180915260 + 144202795 144202881 MER30B 195 - 30 113 183765 78 3 0 5 chain 434222 chr5 180915260 + 144202909 144207820 L1PA4 6152 - 1 4915 9209 800 0 1 48 0 4 413 0 1 202 5 0 53 1 0 769 0 1 252 0 1 1292 0 1 961 18 15 5 0 3 92 chain 7609 chr5 180915260 + 144207823 144207914 MER30 238 - 147 238 173480 91 chain 64830 chr5 180915260 + 144226260 144227597 LTR12 884 - 0 884 50645 452 434 0 16 16 38 34 42 1 233 0 1 73 12 11 25 chain 2106 chr5 180915260 + 144227212 144227243 LTR12 884 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1 0 36 1 2 278 0 4 184 1 13 472 12 4 28 1 3 50 1 0 7 0 1 347 0 1 92 22 4 290 11 12 288 22 21 249 0 1 124 0 1 336 3 0 43 1 0 58 3 4 20 chain 33051 chr5 180915260 + 144286833 144287269 L1PA7 6471 + 6008 6445 79137 51 0 1 71 1 0 109 0 1 40 26 33 8 7 0 123 chain 36554 chr5 180915260 + 144302890 144303494 L1PA15 4387 + 3524 4100 74165 148 10 3 25 2 0 8 23 11 36 0 1 25 15 16 16 9 7 13 4 0 58 3 1 35 12 11 162 chain 133440 chr5 180915260 + 144310354 144311860 L1PA3long 6157 - 2128 3627 27296 84 0 1 255 2 1 517 8 1 640 chain 187831 chr5 180915260 + 144311860 144313969 L1PA3long 6157 + 4041 6157 20258 579 0 7 8 1 0 29 3 1 647 0 4 691 0 1 134 2 0 15 chain 7159 chr5 180915260 + 144319457 144319545 L1PA8 5853 - 294 383 176342 84 0 1 4 chain 48419 chr5 180915260 + 144352243 144352812 L1PA5 6144 - 2 574 60166 111 1 0 34 0 1 99 0 3 324 chain 122317 chr5 180915260 + 144354273 144355808 THE1A-int 1579 + 27 1566 30276 199 7 10 771 0 1 558 chain 26946 chr5 180915260 + 144355820 144356173 THE1A 353 + 0 353 96467 110 1 0 30 2 1 56 0 2 154 chain 111599 chr5 180915260 + 144365229 144366639 L1PA6 6164 - 2228 3636 33737 501 0 1 210 5 4 29 16 14 649 chain 177373 chr5 180915260 + 144366639 144368838 L1PA6 6164 + 3947 6154 21217 1096 0 1 5 1 0 42 4 10 212 1 2 46 0 1 792 chain 154372 chr5 180915260 + 144374131 144375867 L1PA3long 6157 - 1 1738 24061 843 1 2 892 chain 101241 chr5 180915260 + 144375867 144376980 L1PA3long 6157 + 3293 4406 36414 1113 chain 4422 chr5 180915260 + 144379698 144379752 L1PA16 3655 - 121 175 201675 54 chain 2897 chr5 180915260 + 144385972 144386005 L1M3 994 - 626 659 227079 33 chain 50200 chr5 180915260 + 144410601 144411578 MER4E1 777 + 0 770 58871 22 2 3 162 10 0 3 15 0 78 282 88 173 19 23 151 0 7 60 chain 53102 chr5 180915260 + 144421594 144422187 L1P1 4361 - 82 674 56959 132 1 0 460 chain 129689 chr5 180915260 + 144422188 144423702 L1PA5 6144 + 4628 6144 28157 670 1 2 676 32 33 135 chain 5841 chr5 180915260 + 144440662 144440754 L1PA13 3608 - 120 205 186760 23 1 0 17 11 5 40 chain 23376 chr5 180915260 + 144440810 144441056 L1PA2 6032 - 1 247 113780 246 chain 8380 chr5 180915260 + 144453782 144453885 L1PA4 6152 + 6053 6152 168960 88 4 0 11 chain 8965 chr5 180915260 + 144468401 144468512 L1PA7 6471 - 811 925 165794 43 0 3 68 chain 3086 chr5 180915260 + 144468512 144468548 L1PA7 6471 + 5657 5693 219818 36 chain 60047 chr5 180915260 + 144468548 144469272 L1PA7 6471 + 5694 6417 52797 613 0 2 12 6 3 93 chain 3199 chr5 180915260 + 144469276 144469322 L1PA7 6471 + 6420 6464 220942 39 2 0 5 chain 34339 chr5 180915260 + 144473272 144473637 L1HS 6032 + 5667 6032 77146 365 chain 102117 chr5 180915260 + 144475946 144477464 L1PA7 6471 - 2 1260 36233 15 3 0 125 7 0 7 6 15 107 3 4 366 0 1 200 0 3 85 264 0 330 chain 32232 chr5 180915260 + 144477464 144477848 L1PA7 6471 + 4082 4466 79634 384 chain 61376 chr5 180915260 + 144477848 144478587 L1PA7 6471 + 4467 5212 52160 76 0 3 118 0 4 537 1 0 7 chain 6384 chr5 180915260 + 144479646 144479731 MER47B 469 + 285 367 182153 7 3 0 75 chain 17656 chr5 180915260 + 144503368 144503719 L1PB1 5432 - 12 325 133824 16 1 0 9 0 3 22 1 0 16 10 8 14 1 0 5 2 0 30 17 4 13 1 0 39 10 4 16 2 1 53 2 0 9 4 0 12 1 0 12 1 0 19 5 0 8 chain 2912 chr5 180915260 + 144509165 144509197 MER3 215 + 127 159 226825 32 chain 325460 chr5 180915260 + 144529299 144532824 L1PA2 6032 + 2500 6032 12369 1263 1 2 1930 0 1 314 0 5 17 chain 23960 chr5 180915260 + 144560660 144560957 AluYk4 311 + 0 282 110571 131 15 0 151 chain 110246 chr5 180915260 + 144567417 144568787 L1PA7 6471 - 6 1373 34141 141 6 9 6 2 0 89 0 1 313 11 8 271 0 4 149 0 5 53 9 7 256 9 0 55 chain 2925 chr5 180915260 + 144582421 144582453 MER3 215 + 178 210 226580 32 chain 69899 chr5 180915260 + 144644803 144645702 L1PB1 5432 + 3738 4640 48436 422 0 8 297 13 10 154 3 1 10 chain 30576 chr5 180915260 + 144646592 144646979 MLT2A1 477 - 93 477 83250 209 11 8 167 chain 12518 chr5 180915260 + 144660084 144660224 L1PA3long 6157 + 6017 6157 150170 140 chain 69370 chr5 180915260 + 144669536 144670323 L1PA5 6144 + 5357 6144 48655 787 chain 104169 chr5 180915260 + 144675756 144676889 L1PA3long 6157 - 0 1133 35700 1133 chain 104481 chr5 180915260 + 144676889 144678027 L1PA3long 6157 + 3853 4990 35622 202 1 0 935 chain 7685 chr5 180915260 + 144678166 144678322 MSTD 398 + 221 363 173007 6 1 0 41 42 29 66 chain 19500 chr5 180915260 + 144699836 144700055 AluYa5 310 - 14 230 128659 178 3 0 38 chain 19131 chr5 180915260 + 144703317 144703669 L1PA15 4387 - 21 354 129742 10 1 0 17 17 12 12 3 1 44 6 3 50 2 1 8 4 0 20 12 11 47 1 0 26 1 0 71 chain 519265 chr5 180915260 + 144707355 144713793 L1PA7 6471 - 6 6469 5233 7 0 2 134 2 1 583 0 1 34 2 3 76 0 3 15 0 4 582 4 0 504 6 7 240 0 5 55 0 2 684 1 2 24 1 0 604 0 4 256 0 1 32 0 1 434 1 5 661 0 1 123 1 2 786 1 2 172 10 1 70 0 1 4 6 5 135 4 11 184 chain 79999 chr5 180915260 + 144715328 144716200 L1PA3long 6157 - 491 1363 43594 872 chain 42560 chr5 180915260 + 144716200 144716670 L1PA3long 6157 + 5672 6142 65949 470 chain 6539 chr5 180915260 + 144716945 144717249 MER21C 908 - 91 398 180932 8 3 0 32 19 18 11 132 131 25 10 19 41 8 7 15 chain 275416 chr5 180915260 + 144748740 144752412 L1PA8A 6298 - 10 3971 14904 210 0 2 503 17 22 55 0 7 20 18 6 68 0 1 195 0 1 8 0 1 49 8 4 107 0 1 208 0 1 123 3 7 68 0 1 175 8 11 362 0 1 5 0 1 75 9 10 108 0 1 152 3 160 21 6 7 114 0 4 11 7 4 31 0 1 37 0 5 100 12 13 43 1 2 287 0 86 18 0 13 254 2 3 116 0 5 48 0 2 7 chain 55686 chr5 180915260 + 144773523 144774155 L1PA4 6152 + 5520 6151 55316 298 1 0 74 1 0 111 0 1 147 chain 24683 chr5 180915260 + 144790635 144790987 THE1B 368 - 0 367 106532 58 3 0 6 1 3 125 6 7 104 6 21 43 chain 1365 chr5 180915260 + 144794527 144794779 L1PA11 4918 + 1640 1905 55241 83 11 14 70 6 7 32 19 28 31 chain 82221 chr5 180915260 + 144794847 144795767 L1PA3long 6157 - 0 922 42672 147 1 3 772 chain 30506 chr5 180915260 + 144795767 144796098 L1PA3long 6157 + 4933 5264 81771 331 chain 1474 chr5 180915260 + 144796098 144796370 L1PA11 4918 + 1905 2183 55241 210 0 6 62 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MLT1D 503 + 375 488 185444 34 23 28 51 chain 480853 chr5 180915260 + 145123052 145129639 L1PA8A 6298 + 34 6291 7697 6 1 0 16 1 0 11 24 13 19 36 30 18 2 1 9 2 1 18 1 0 13 3 1 13 8 5 12 26 22 15 5 0 9 2 0 5 8 0 37 1 0 9 19 11 80 2 0 14 1 0 10 5 3 32 0 1 38 6 5 221 31 1 32 0 1 189 0 1 137 0 4 125 13 13 264 0 1 308 0 1 33 0 1 197 306 0 52 0 1 415 29 15 111 2 0 368 0 1 362 6 1 25 10 8 18 1 10 18 1 6 342 8 26 52 0 1 395 0 1 162 1 2 16 0 1 25 0 28 37 0 4 800 0 5 141 0 3 43 0 2 34 0 1 636 1 0 83 chain 51936 chr5 180915260 + 145177990 145178589 L1PA6 6164 + 5559 6158 57657 599 chain 19333 chr5 180915260 + 145200218 145200700 MER50 708 - 18 634 129134 43 4 1 76 209 345 121 0 1 29 chain 17464 chr5 180915260 + 145213751 145214176 LTR23 429 + 0 424 134347 4 1 0 23 21 16 44 43 39 137 15 16 16 76 83 36 0 1 9 chain 475748 chr5 180915260 + 145257155 145262742 L1PA6 6164 + 0 6162 7863 168 0 542 365 5 6 780 0 3 62 0 1 392 13 6 417 0 6 43 0 3 391 2 0 4 0 1 253 4 17 184 0 4 714 0 4 241 0 7 923 4 3 622 chain 18057 chr5 180915260 + 145269179 145269437 L1PA15-16 3068 + 226 479 132710 19 6 4 23 1 0 81 2 0 126 chain 534152 chr5 180915260 + 145270710 145276802 L1PA4 6152 + 0 6103 3690 581 0 3 6 3 0 806 2 3 1771 0 1 506 7 5 234 1 2 433 0 4 961 1 0 4 0 1 153 1 0 532 0 7 90 chain 124059 chr5 180915260 + 145305938 145307333 L1PA4 6152 - 1148 2543 29681 1395 chain 101525 chr5 180915260 + 145307333 145308469 L1PA4 6152 + 5008 6143 36341 834 0 1 263 2 0 37 chain 24306 chr5 180915260 + 145349706 145350151 L1PB1 5432 - 10 422 108631 26 4 3 22 2 1 24 2 0 14 1 0 5 2 0 15 11 0 16 3 0 16 2 1 42 1 0 18 1 0 50 3 1 9 6 2 20 1 0 23 5 0 7 1 4 93 chain 26883 chr5 180915260 + 145372040 145372393 THE1B 368 - 0 368 96693 75 1 0 82 9 11 28 1 0 113 0 15 44 chain 116754 chr5 180915260 + 145372398 145373969 THE1B-int 1605 - 5 1604 32209 313 1 0 82 1 19 27 13 12 23 10 11 511 14 4 16 8 11 17 7 0 87 10 35 431 chain 5962 chr5 180915260 + 145384389 145384465 L1MB2 1706 + 1617 1692 185581 4 1 0 71 chain 241142 chr5 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14 2 0 24 1 0 21 1 0 13 1 0 12 chain 224053 chr5 180915260 + 146057682 146060118 L1PA3long 6157 + 3721 6157 17652 2436 chain 2565 chr5 180915260 + 146101601 146101628 MIR 256 - 117 144 232253 27 chain 3820 chr5 180915260 + 146107481 146107540 L1MA7 2200 - 237 293 210082 13 5 2 41 chain 27952 chr5 180915260 + 146108136 146108492 THE1A 353 + 0 353 93160 107 4 3 166 2 0 77 chain 124204 chr5 180915260 + 146108492 146110037 THE1A-int 1579 + 0 1570 29626 15 0 2 456 6 16 58 0 1 132 6 7 78 12 11 417 0 14 91 2 0 272 chain 27804 chr5 180915260 + 146110046 146110399 THE1A 353 + 0 353 93678 26 0 1 83 1 0 243 chain 27719 chr5 180915260 + 146115523 146115894 THE1C 375 + 7 375 93974 80 0 1 96 18 15 151 1 0 25 chain 5875 chr5 180915260 + 146116618 146116712 MER33 330 - 189 282 186426 14 1 0 17 1 2 4 1 0 56 chain 68073 chr5 180915260 + 146140396 146141190 L1PA3long 6157 + 5315 6157 49209 41 0 1 646 11 58 96 chain 25576 chr5 180915260 + 146190293 146190577 L1PA5 6144 - 5 289 101840 284 chain 9421 chr5 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146520660 LTR22 571 + 0 565 75024 82 1 0 174 37 66 56 0 1 57 37 36 93 chain 64111 chr5 180915260 + 146550502 146551238 L1PA5 6144 + 5405 6143 50961 65 0 2 671 chain 107486 chr5 180915260 + 146562774 146563980 L1PA5 6144 - 9 1216 34813 537 0 1 669 chain 114453 chr5 180915260 + 146563980 146565271 L1PA5 6144 + 3647 4935 32958 28 3 0 1260 chain 38242 chr5 180915260 + 146574566 146574998 L1PA5 6144 - 4 436 71783 432 chain 12024 chr5 180915260 + 146587488 146587655 L1PA8 5853 - 0 165 152101 87 7 6 19 2 1 52 chain 339134 chr5 180915260 + 146595572 146600057 L1PA7 6471 + 0 6469 11919 167 100 99 139 56 0 172 12 9 156 9 14 484 0 4 9 12 31 441 0 1 7 8 4 16 1 0 83 0 1 190 1 0 553 0 1 56 1 0 449 14 13 312 0 2023 123 3 0 32 5 8 24 1 0 79 0 2 59 11 10 688 2 0 10 chain 33839 chr5 180915260 + 146634009 146634786 LTR10F 562 - 0 562 77872 87 2 0 194 8 15 12 0 52 20 1 29 38 0 4 4 0 1 35 305 0 71 chain 195784 chr5 180915260 + 146635152 146638167 HERVIP10FH-int 2884 - 119 2735 19519 9 1 0 51 1 0 66 1 0 365 1 0 20 13 4 119 0 1 80 1 0 107 0 58 62 325 0 40 5 4 15 1 0 3 10 0 39 30 19 34 20 3 14 7 1 12 57 26 11 9 6 124 30 14 52 1 0 9 1 0 9 3 0 8 13 9 163 2 0 525 5 11 48 1 0 226 10 0 188 7 0 61 chain 31519 chr5 180915260 + 146640758 146641236 LTR10F 562 - 0 562 81614 68 5 0 8 0 5 6 2 0 194 9 15 13 0 80 10 29 1 18 1 29 115 chain 87176 chr5 180915260 + 146650662 146651713 MER11C 1089 + 0 1063 40700 249 0 1 47 1 0 16 0 4 371 0 4 45 0 1 84 0 2 96 7 8 135 chain 396096 chr5 180915260 + 146660417 146665978 L1PB1 5432 + 19 5424 10238 27 7 8 189 0 1 57 4 19 38 0 14 24 4 5 211 1 0 5 0 1 541 0 4 204 230 51 290 3 1 401 3 4 98 1 2 286 6 4 335 3 4 75 1 21 261 5 6 104 2 0 54 2 17 352 40 0 145 1 0 618 14 0 7 0 25 89 5 6 167 15 4 10 4 12 211 0 1 6 6 25 44 1 2 9 5 0 24 1 0 8 17 12 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 15 9 0 16 9 6 13 2 0 45 2 1 28 1 0 4 chain 10015 chr5 180915260 + 146666018 146666169 MER41E 591 - 440 591 160511 30 1 0 14 10 11 96 chain 3412 chr5 180915260 + 146675605 146675645 MER34C 514 - 359 399 216904 40 chain 42810 chr5 180915260 + 146678551 146679090 MER41A 554 - 0 554 65641 187 9 11 27 0 3 129 0 10 187 chain 12260 chr5 180915260 + 146743802 146743962 MLT1A-int 1186 - 927 1088 151155 127 1 0 17 0 2 15 chain 17056 chr5 180915260 + 146761427 146761654 MER30 238 - 0 238 135442 47 3 0 62 8 22 107 chain 167785 chr5 180915260 + 146800537 146802566 L1PA7 6471 + 4418 6461 22306 202 0 1 186 0 5 166 13 13 307 0 1 224 0 10 88 1 0 18 2 1 497 3 0 176 0 1 6 2 3 138 chain 40836 chr5 180915260 + 146822684 146823155 L1PA8A 6298 + 5805 6291 68123 119 0 16 251 1 0 100 chain 45862 chr5 180915260 + 146837633 146838192 MER41A 554 + 0 554 62166 59 7 0 233 0 1 99 2 1 70 0 2 89 chain 8702 chr5 180915260 + 146848295 146848393 L1PA5 6144 - 6 104 167183 98 chain 30558 chr5 180915260 + 146857126 146857444 AluYb8 318 - 0 318 83308 318 chain 7626 chr5 180915260 + 146860938 146861033 LTR40c 466 - 23 118 173376 95 chain 195497 chr5 180915260 + 146874655 146876973 L1PA4 6152 + 3525 6151 19541 28 137 445 2153 chain 14128 chr5 180915260 + 146931021 146931318 MSTA 426 + 67 413 144111 33 24 49 53 67 65 29 4 24 63 0 6 24 chain 4062 chr5 180915260 + 146969551 146969595 MIR 256 - 117 161 206447 44 chain 528600 chr5 180915260 + 146984406 146991203 L1PA7 6471 - 17 6467 4346 351 315 0 121 42 0 17 0 1 4 3 1 259 0 2 15 1 2 60 2 0 610 0 1 252 4 9 77 0 4 658 7 6 23 1 2 284 0 1 1365 3 4 290 1 0 243 18 10 69 0 3 48 0 3 217 5 1 202 0 4 84 0 1 1146 chain 336208 chr5 180915260 + 147032268 147036559 L1PA8 5853 - 0 4318 11991 92 5 4 16 2 1 61 2 1 21 0 1 48 2 0 44 1 0 49 1 0 56 3 1 80 0 1 148 1 0 31 4 1 8 0 3 99 4 3 67 6 8 5 3 0 71 0 1 562 0 1 35 5 1 41 5 6 326 0 1 210 1 2 73 0 9 288 0 2 162 0 1 235 5 8 34 1 5 55 1 0 4 0 1 469 2 3 44 0 5 99 0 2 167 0 1 434 0 8 103 chain 38779 chr5 180915260 + 147076137 147076653 THE1C-int 1605 + 0 576 71040 12 4 3 95 2 57 270 8 15 74 1 0 50 chain 8118 chr5 180915260 + 147081805 147081970 L1PB1 5432 + 5242 5392 170385 39 1 0 15 1 0 4 2 0 11 10 0 11 6 0 7 11 17 24 1 0 22 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148131805 148133470 L1PA7 6471 - 6 1642 26372 743 1 0 96 45 17 433 2 1 37 0 1 308 chain 101845 chr5 180915260 + 148201862 148203398 L1PA7 6471 - 3 1228 36302 7 4 0 665 333 26 527 chain 5596 chr5 180915260 + 148255019 148255167 Charlie1a 1436 + 105 293 189128 44 66 106 38 chain 26993 chr5 180915260 + 148257010 148257390 L1PA8 5853 + 5481 5853 96304 34 1 0 49 2 1 44 2 0 70 1 0 13 10 9 38 3 2 19 1 0 93 chain 3305 chr5 180915260 + 148259178 148259280 MIRb 242 - 109 226 218862 31 24 38 11 20 21 16 chain 122037 chr5 180915260 + 148269349 148270813 L1PA7 6471 - 1 1467 30374 6 3 0 374 1 0 466 0 2 16 0 4 58 0 1 367 2 1 38 0 1 118 1 0 14 chain 108610 chr5 180915260 + 148275419 148277147 L1PB1 5432 + 3742 5422 34535 220 1 0 4 39 13 14 1 0 21 0 1 25 1 4 28 0 1 39 1 2 376 0 1 42 20 32 56 0 2 378 0 1 4 0 68 7 0 3 19 4 0 12 75 0 20 30 24 9 2 0 52 2 1 16 1 0 21 4 1 21 1 0 16 29 17 13 32 27 17 1 0 22 1 0 12 1 0 18 chain 191537 chr5 180915260 + 148297708 148299876 L1PA5 6144 - 0 2169 19908 625 1 2 223 2 1 482 0 1 835 chain 555322 chr5 180915260 + 148321836 148327853 L1PA2 6032 + 12 6029 789 60 0 1 5195 1 0 761 chain 85201 chr5 180915260 + 148334912 148335956 MER11C 1089 - 26 1089 41453 319 9 10 40 0 4 214 0 1 158 0 4 57 0 9 247 chain 84479 chr5 180915260 + 148355021 148355958 L1PA4 6152 + 5213 6151 41727 890 0 1 47 chain 26657 chr5 180915260 + 148396211 148396506 AluY 311 + 5 301 97462 127 0 1 168 chain 32907 chr5 180915260 + 148453324 148453717 L1P3 4156 + 1236 1632 79357 17 0 3 376 chain 259036 chr5 180915260 + 148456001 148458888 L1PA4 6152 + 3261 6152 15752 2043 0 4 844 chain 126327 chr5 180915260 + 148469750 148471307 THE1A-int 1579 + 0 1579 28998 712 0 1 9 0 9 8 0 3 119 0 9 709 chain 127035 chr5 180915260 + 148477356 148479305 L1PB1 5432 + 3526 5422 28808 4 0 1 6 7 0 61 0 4 237 0 1 24 14 0 48 21 9 445 6 17 176 4 6 60 2 3 415 83 73 18 1 0 9 2 1 12 7 3 9 2 0 51 1 0 16 2 1 44 1 0 15 51 37 14 2 0 24 1 0 22 1 0 13 2 1 16 chain 65860 chr5 180915260 + 148487044 148487777 L1PA5 6144 + 5408 6141 50162 733 chain 7374 chr5 180915260 + 148492258 148492389 Tigger3 1187 + 476 594 174949 52 1 0 15 1 0 20 8 0 4 1 0 13 3 1 13 chain 108340 chr5 180915260 + 148502528 148503976 L1P2 5180 + 2 1511 34605 134 11 25 33 1 0 53 17 16 17 56 56 48 0 1 69 8 7 54 1 0 55 0 49 164 9 10 718 chain 20332 chr5 180915260 + 148519400 148519637 L1PA6 6164 - 8 245 126131 237 chain 123334 chr5 180915260 + 148524660 148526833 L1PA16 3655 - 36 1782 29935 16 5 0 7 23 4 14 3 0 288 25 23 63 1 0 79 1 2 4 1 0 129 6 0 10 309 10 53 1 0 5 23 5 4 0 1 211 20 19 433 0 1 223 88 19 114 5 0 9 chain 38888 chr5 180915260 + 148567116 148567648 LTR10F 562 + 0 562 70885 115 1 29 74 10 13 25 7 0 10 5 11 285 chain 3396 chr5 180915260 + 148604892 148604933 L1MB5 1630 - 162 203 217143 41 chain 4255 chr5 180915260 + 148605579 148605637 L1PB1 5432 - 317 376 203803 10 1 2 47 chain 26742 chr5 180915260 + 148676292 148676664 THE1C 375 - 0 375 97188 26 1 0 7 10 0 115 0 3 69 0 14 21 5 2 118 chain 3893 chr5 180915260 + 148681454 148681495 MIRb 242 - 104 145 208965 41 chain 25090 chr5 180915260 + 148716010 148716418 MSTC 436 - 7 414 104346 72 51 50 29 13 15 142 2 0 99 chain 19531 chr5 180915260 + 148764710 148764936 AluSp 311 + 74 300 128565 226 chain 6661 chr5 180915260 + 148775567 148775718 Ricksha 1077 - 896 1031 179993 33 4 1 26 3 0 14 2 0 12 19 13 24 0 1 6 3 0 5 chain 22632 chr5 180915260 + 148812946 148813316 THE1D 372 - 0 372 117415 33 2 0 27 0 1 4 1 0 83 46 55 6 0 1 31 10 4 127 chain 25815 chr5 180915260 + 148845343 148845647 AluSg7 307 - 3 307 100813 304 chain 3563 chr5 180915260 + 148853021 148853062 5S 121 + 1 42 214261 41 chain 5792 chr5 180915260 + 148858367 148858440 MSTD 398 - 317 390 187236 73 chain 23710 chr5 180915260 + 148868542 148868840 AluSp 311 - 15 311 111975 137 0 2 60 1 0 73 3 0 24 chain 3165 chr5 180915260 + 148912267 148912305 Charlie4a 502 - 317 355 221659 38 chain 26328 chr5 180915260 + 148913762 148914074 AluSc 308 + 0 308 98707 71 2 0 102 2 0 135 chain 27731 chr5 180915260 + 148917577 148917883 AluSp 311 - 4 310 93931 306 chain 30543 chr5 180915260 + 148921629 148922085 MER1A 529 + 89 529 83348 4 1 0 76 5 8 271 41 23 58 chain 4627 chr5 180915260 + 148962153 148962215 L1MA4 2864 + 2749 2809 199330 16 3 1 43 chain 27984 chr5 180915260 + 148987092 148987830 LTR7B 505 - 15 505 93055 36 14 13 76 1 0 85 365 105 58 0 11 13 0 3 90 chain 2706 chr5 180915260 + 149018501 149018538 LTR33A 529 + 110 143 230171 25 4 0 8 chain 26069 chr5 180915260 + 149028270 149028625 THE1B 368 - 0 368 99757 75 1 0 119 14 13 90 12 27 44 chain 159830 chr5 180915260 + 149049095 149051004 SVA_D 2077 - 0 2071 23362 99 0 4 367 0 9 160 1 0 18 115 0 31 0 1 41 0 1 260 0 183 138 0 40 78 0 40 601 chain 7209 chr5 180915260 + 149049742 149049855 SVA_D 2077 - 757 833 98143 44 37 0 32 chain 2043 chr5 180915260 + 149049786 149049823 SVA_D 2077 - 539 576 168567 37 chain 4517 chr5 180915260 + 149107395 149107444 MIRb 242 - 105 154 200590 49 chain 5496 chr5 180915260 + 149116512 149116717 L1MC1 2226 - 44 243 190080 22 113 110 4 1 0 54 2 0 9 chain 22447 chr5 180915260 + 149145169 149145445 AluY 311 + 30 304 118262 81 10 7 14 0 1 171 chain 63016 chr5 180915260 + 149147324 149148884 Charlie3 2679 - 0 2662 51437 58 42 18 86 0 1 212 0 1 80 0 1805 35 680 0 349 1 0 17 chain 103846 chr5 180915260 + 149167447 149168628 L1PA5 6144 + 4942 6120 35761 1105 3 0 73 chain 6469 chr5 180915260 + 149188467 149188555 L1MB3 1562 + 1468 1555 181481 56 1 0 31 chain 14751 chr5 180915260 + 149240100 149240315 MER30 238 + 0 228 142098 98 16 0 13 8 34 51 0 3 29 chain 35093 chr5 180915260 + 149258983 149259378 L1PA2 6032 - 3 391 76058 8 7 0 380 chain 31985 chr5 180915260 + 149267119 149267589 LTR46 455 + 0 455 80884 188 29 28 90 1 0 40 4 5 60 21 7 37 chain 24351 chr5 180915260 + 149308904 149309175 AluY 311 + 17 288 108366 271 chain 3289 chr5 180915260 + 149318205 149318244 MER53 195 + 44 83 219195 39 chain 36641 chr5 180915260 + 149407497 149407961 MER4A1 472 - 0 472 74041 159 14 21 185 0 1 106 chain 3670 chr5 180915260 + 149466480 149466521 MER21B 843 + 40 81 212415 41 chain 7310 chr5 180915260 + 149477976 149478058 HY3 101 + 9 91 175368 82 chain 36140 chr5 180915260 + 149489465 149490000 LTR10A 586 + 0 573 74720 160 0 3 30 4 44 4 1 0 40 10 11 48 8 5 142 24 22 64 chain 43662 chr5 180915260 + 149627914 149628402 L1PA5 6144 - 14 502 64613 488 chain 6638 chr5 180915260 + 149729845 149730027 MER113A 284 - 56 216 180185 11 0 1 9 62 48 51 1 0 29 8 0 11 chain 29864 chr5 180915260 + 149746199 149746517 AluYb8 318 - 1 318 85231 302 1 0 15 chain 24982 chr5 180915260 + 149787304 149787605 AluYc3 301 - 0 301 104900 301 chain 6687 chr5 180915260 + 149815352 149815436 MER33 330 + 146 230 179779 84 chain 13519 chr5 180915260 + 149822734 149822879 L1PA4 6152 - 9 154 146285 145 chain 75358 chr5 180915260 + 149833323 149834280 LTR5_Hs 974 - 0 974 45838 101 3 9 204 0 1 196 0 4 115 0 2 84 18 18 228 0 4 8 chain 20350 chr5 180915260 + 149848347 149848701 L1PA8 5853 - 0 330 126063 37 18 4 51 6 5 15 2 1 33 0 14 8 26 7 70 2 0 44 1 0 41 chain 10642 chr5 180915260 + 149859996 149860162 MER2 342 + 164 336 157638 104 28 34 34 chain 75376 chr5 180915260 + 149916547 149917500 MER11C 1089 + 0 1075 45831 55 0 91 118 0 3 52 1 18 186 0 1 62 12 13 177 0 9 290 chain 2958 chr5 180915260 + 150065530 150065564 L1ME2z 1083 + 466 500 225914 34 chain 12221 chr5 180915260 + 150066597 150066826 MER47A 366 + 13 318 151340 28 24 59 105 0 42 12 5 0 7 3 8 27 1 0 17 chain 15811 chr5 180915260 + 150082836 150083011 PRIMA4_LTR 623 + 0 175 138927 175 chain 13308 chr5 180915260 + 150083743 150083893 PRIMA4_LTR 623 - 473 623 147056 150 chain 116978 chr5 180915260 + 150118763 150120557 L1PB1 5432 + 3602 5381 32137 112 22 7 173 0 1 173 0 1 91 0 1 301 5 13 157 4 0 45 0 4 26 3 1 36 12 30 30 0 2 6 1 0 72 0 1 87 1 0 39 1 3 39 0 1 4 6 5 34 19 17 24 39 31 51 6 5 12 1 0 44 1 0 15 3 0 6 68 55 13 1 0 11 chain 553813 chr5 180915260 + 150122399 150128509 L1PA3long 6157 + 1 6157 969 472 2 1 7 0 28 466 0 11 2510 0 4 1810 0 4 843 chain 5996 chr5 180915260 + 150134555 150134723 L1MC3 1789 + 1180 1321 185282 28 84 57 56 chain 18708 chr5 180915260 + 150150234 150150571 MER4A1 472 + 127 472 130925 64 40 41 42 10 14 52 7 8 47 5 7 70 chain 4298 chr5 180915260 + 150172656 150172703 L1PB 1623 - 226 273 201000 47 chain 112847 chr5 180915260 + 150172703 150174228 L1PB1 5432 + 3787 5300 33421 14 2 1 644 0 1 96 0 1 83 3 0 71 0 1 98 33 30 154 0 5 8 3 4 105 13 11 24 1 0 9 16 11 11 2 0 51 2 1 16 1 0 42 3 2 15 1 0 4 chain 35547 chr5 180915260 + 150188781 150189247 LTR22B 500 + 0 465 75478 128 2 0 42 7 8 287 chain 13634 chr5 180915260 + 150191456 150191616 L1PB1 5432 + 4453 4613 145839 160 chain 32015 chr5 180915260 + 150191624 150192328 L1PB1 5432 + 4623 5023 80838 82 2 0 108 304 2 208 chain 23213 chr5 180915260 + 150191826 150192117 AluSq10 312 + 10 303 114629 43 1 5 239 2 0 6 chain 15694 chr5 180915260 + 150192482 150192788 L1PB1 5432 + 5114 5391 139291 24 1 0 9 1 0 9 6 2 8 2 0 54 2 1 16 1 0 44 1 0 15 3 0 11 10 1 19 32 27 16 1 0 21 chain 29144 chr5 180915260 + 150199240 150199592 THE1A 353 - 0 351 88346 155 1 0 88 1 0 25 0 1 82 chain 119572 chr5 180915260 + 150199594 150201087 THE1A-int 1579 - 0 1504 31190 180 0 2 21 0 6 69 0 1 581 5 6 96 0 1 114 1 0 62 5 6 4 1 0 99 0 1 255 chain 47174 chr5 180915260 + 150202307 150202839 L1PA5 6144 + 5600 6132 61067 532 chain 52199 chr5 180915260 + 150211512 150212103 LTR10C 591 - 0 591 57501 591 chain 44025 chr5 180915260 + 150216835 150217424 LTR10C 591 - 0 591 64172 166 0 17 7 42 25 41 1 0 92 0 3 240 chain 115027 chr5 180915260 + 150224844 150226495 LTR12C 1709 + 0 1704 32783 266 7 8 64 7 50 11 0 1 62 9 3 4 1 0 135 5 6 93 41 0 115 1 41 212 0 47 89 24 0 17 11 4 24 0 1 186 25 24 158 5 4 79 chain 3393 chr5 180915260 + 150225508 150225549 LTR12C 1709 + 981 1022 130455 41 chain 266764 chr5 180915260 + 150236496 150239436 L1PA4 6152 - 1 2949 15349 7 0 1 474 0 3 392 0 4 2067 chain 12640 chr5 180915260 + 150249297 150249456 HSMAR1 1287 - 724 890 149685 7 0 7 152 chain 9092 chr5 180915260 + 150249686 150249792 HSMAR1 1287 - 5 111 165112 106 chain 5371 chr5 180915260 + 150249806 150249868 MER4A1 472 + 410 472 191302 62 chain 396742 chr5 180915260 + 150251771 150256725 HERVL-int 5654 + 605 5654 10215 32 13 12 47 0 1 142 0 20 13 0 10 236 0 1 605 6 8 236 11 12 632 9 20 248 0 1 42 0 1 244 2 3 663 0 12 123 1 4 478 7 0 127 0 16 352 0 7 7 0 2 123 0 5 86 3 1 238 0 6 14 10 15 204 chain 24851 chr5 180915260 + 150268728 150269087 THE1B 368 - 1 368 105622 124 35 45 31 2 0 167 chain 3609 chr5 180915260 + 150286395 150286440 MLT1F1 559 - 0 46 213498 36 0 1 9 chain 19440 chr5 180915260 + 150289045 150289424 THE1B 368 - 12 368 128850 34 45 16 56 14 22 14 0 1 4 36 32 60 5 6 111 chain 21832 chr5 180915260 + 150303996 150304365 THE1C 375 + 0 375 120888 142 7 11 27 34 35 118 25 26 16 chain 29058 chr5 180915260 + 150308690 150309002 AluYb8 318 - 8 318 88729 184 2 0 126 chain 27682 chr5 180915260 + 150315208 150315500 AluYb8 318 + 14 306 94109 292 chain 11553 chr5 180915260 + 150337220 150337363 MER4A1 472 + 0 143 154091 143 chain 183371 chr5 180915260 + 150341074 150343669 MER4-int 2692 + 90 2692 20644 9 1 0 41 26 27 10 4 5 36 0 1 26 1 2 310 0 1 30 7 4 39 0 2 36 5 4 37 1 0 14 0 1 111 0 1 81 0 1 86 31 25 35 2 0 101 0 1 291 1 0 19 0 2 64 9 13 82 1 0 6 0 3 131 0 1 85 16 17 113 5 4 268 26 20 139 10 16 41 0 1 202 0 1 6 chain 541296 chr5 180915260 + 150343701 150349827 L1PA5 6144 + 3 6135 2621 673 0 3 2039 2 1 2572 0 4 840 chain 35072 chr5 180915260 + 150352922 150353311 L1P3 4156 + 2577 2967 76087 52 0 1 337 chain 18536 chr5 180915260 + 150366459 150366757 LTR46-int 301 - 2 294 131407 37 8 0 88 27 29 99 12 12 27 chain 82197 chr5 180915260 + 150370048 150371035 LTR5B 1012 - 9 1012 42679 143 0 1 229 0 2 254 10 9 228 0 14 123 chain 35916 chr5 180915260 + 150377525 150378361 MER51A 677 - 0 677 74993 62 1 0 46 0 8 15 0 2 180 0 1 8 24 119 16 321 44 145 1 14 17 chain 19885 chr5 180915260 + 150437004 150437264 AluSc5 308 + 0 266 127534 50 0 1 32 8 14 160 1 0 9 chain 16028 chr5 180915260 + 150437296 150437518 MER2 342 + 88 314 138280 59 8 13 130 1 0 24 chain 23293 chr5 180915260 + 150463734 150464020 AluSq2 311 + 11 299 114238 120 1 2 128 1 2 36 chain 6697 chr5 180915260 + 150541489 150541563 MER83 447 + 330 404 179709 74 chain 18716 chr5 180915260 + 150543914 150544159 L1PB1 5432 - 329 575 130910 87 0 2 53 0 1 92 2 0 11 chain 35737 chr5 180915260 + 150619931 150620375 LTR2 463 - 17 463 75211 71 12 13 246 8 9 107 chain 28517 chr5 180915260 + 150621826 150622245 MER51B 395 - 11 395 91112 49 0 4 151 52 0 60 1 14 106 chain 5953 chr5 180915260 + 150624282 150624354 MER51A 677 - 16 88 185658 72 chain 39889 chr5 180915260 + 150630592 150631187 MER51A 677 - 16 677 69474 21 1 0 37 12 4 65 1 2 127 0 13 48 0 91 28 0 2 27 52 20 176 chain 15927 chr5 180915260 + 150634171 150634418 MER47A 366 - 36 295 138589 10 0 16 34 4 7 13 15 0 144 1 9 26 chain 31501 chr5 180915260 + 150652368 150652804 MLT2A1 477 - 0 477 81645 8 0 4 25 13 49 6 6 0 181 0 1 21 0 1 11 4 1 129 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152783238 MER58A 224 + 3 72 216245 14 18 0 7 0 18 30 chain 49639 chr5 180915260 + 152798658 152799270 L1PA6 6164 - 4 630 59283 7 0 1 248 12 16 56 0 1 270 0 8 19 chain 4374 chr5 180915260 + 152803274 152803330 L1MA4 2864 + 2755 2809 202268 11 2 0 43 chain 29236 chr5 180915260 + 152823195 152823504 AluYa5 310 - 1 310 87874 309 chain 41031 chr5 180915260 + 152829246 152829697 LTR7 482 - 0 482 67855 185 0 31 266 chain 292962 chr5 180915260 + 152830969 152834524 HERVH-int 3825 - 9 3825 13825 478 8 218 39 9 11 1354 8 35 390 1 0 4 0 1 505 0 3 12 0 2 7 0 1 57 2 1 42 1 0 4 12 13 8 3 0 9 6 18 24 1 0 10 1 0 38 5 0 27 0 4 278 0 11 212 chain 40507 chr5 180915260 + 152834539 152834990 LTR7 482 - 0 482 68583 185 0 31 266 chain 99001 chr5 180915260 + 152843710 152845186 MER41-int 2638 - 2 1561 37028 85 84 58 40 0 1 356 8 4 117 13 0 5 3 0 94 2 0 206 1 0 22 0 7 66 0 4 51 12 14 178 10 133 15 4 0 51 11 10 42 chain 3398 chr5 180915260 + 152843814 152843874 MER41-int 2638 + 1587 2521 217113 25 1 875 34 chain 25485 chr5 180915260 + 152850695 152850997 L1PA7 6471 - 6 308 102293 302 chain 219775 chr5 180915260 + 152851432 152854740 L1PA10 4194 - 537 3464 17895 320 0 1 8 9 7 78 3 0 217 0 1 6 9 6 189 2 3 76 6 7 70 4 5 438 2 1 252 6 12 108 0 1 30 5 4 7 0 11 134 16 18 344 397 0 191 0 1 381 chain 3155 chr5 180915260 + 152887783 152887957 MER3 215 + 12 88 221830 13 15 14 25 0 1 11 98 0 12 chain 13956 chr5 180915260 + 152926649 152926848 MER30 238 + 26 238 144726 80 6 22 71 3 0 39 chain 2881 chr5 180915260 + 152950249 152950367 MIRb 242 + 104 223 227346 28 71 72 19 chain 7519 chr5 180915260 + 152979055 152979148 MER2 342 - 98 191 174045 93 chain 45884 chr5 180915260 + 152981591 152982100 L1PA3long 6157 + 5647 6157 62141 6 0 1 503 chain 43263 chr5 180915260 + 152982580 152983059 L1PA3long 6157 - 96 574 65099 362 1 0 116 chain 10511 chr5 180915260 + 152986636 152986768 L1P5 443 - 6 138 158197 132 chain 3373 chr5 180915260 + 152993171 152993248 MADE1 96 + 0 96 217613 23 3 4 19 15 33 17 chain 4160 chr5 180915260 + 153047098 153047257 MIR 256 - 0 164 205091 40 92 97 27 chain 3423 chr5 180915260 + 153067192 153067233 MER3 215 + 174 215 216712 41 chain 556382 chr5 180915260 + 153102820 153108954 L1PA3long 6157 + 6 6157 686 1040 1 0 1160 0 4 182 0 4 954 0 2 166 0 3 425 0 1 511 0 3 179 0 1 1516 chain 33651 chr5 180915260 + 153114767 153115208 LTR2 463 - 0 463 78169 88 15 16 168 8 29 162 chain 23506 chr5 180915260 + 153118277 153118571 AluSp 311 - 8 301 113093 22 9 8 263 chain 136057 chr5 180915260 + 153228329 153230172 L1PA13 3608 - 121 1968 26820 21 4 3 4 0 1 9 3 1 5 2 0 47 2 0 37 3 0 20 9 8 58 2 0 112 2 1 28 1 0 179 4 12 210 0 2 67 1 0 4 2 4 655 7 14 261 1 0 79 0 1 4 chain 13595 chr5 180915260 + 153230608 153230762 MLT2A2 560 - 406 560 145997 154 chain 31265 chr5 180915260 + 153290110 153290474 L1PA5 6144 + 5780 6144 82053 364 chain 254209 chr5 180915260 + 153292319 153295828 L1PA11 4918 - 411 3870 16021 19 8 7 6 2 0 80 1 0 58 11 6 578 21 17 40 1 0 71 5 6 230 11 14 145 3 4 240 1 2 264 0 1 171 0 1 286 1 5 21 1 2 49 1 0 111 0 3 7 2 1 119 3 6 113 12 9 35 1 17 20 0 4 62 72 0 110 10 12 146 4 1 51 0 1 24 0 1 247 0 1 35 chain 27503 chr5 180915260 + 153313035 153313389 THE1A 353 - 0 353 94643 243 2 1 109 chain 120835 chr5 180915260 + 153313398 153314923 THE1A-int 1579 - 9 1579 30748 127 0 5 69 4 0 215 0 1 127 1 0 456 0 8 321 22 56 168 0 2 15 chain 27420 chr5 180915260 + 153314923 153315274 THE1A 353 - 0 353 94908 179 8 11 53 1 0 110 chain 39711 chr5 180915260 + 153320548 153321122 LTR10B1 532 + 0 532 69743 59 8 9 105 12 3 14 32 0 41 4 2 299 chain 85868 chr5 180915260 + 153322152 153323170 L1PA6 6164 + 5131 6159 41208 213 1 13 797 2 0 5 chain 27159 chr5 180915260 + 153323735 153324085 THE1A 353 - 0 353 95727 117 0 3 123 2 1 26 0 1 82 chain 119237 chr5 180915260 + 153324090 153325608 THE1A-int 1579 - 5 1579 31317 161 0 1 9 0 1 162 6 51 33 0 3 68 0 1 25 0 1 35 1 0 209 1 6 19 2 1 266 1 2 69 0 1 21 0 1 160 2 0 268 chain 27716 chr5 180915260 + 153325608 153325956 THE1A 353 - 0 353 93987 242 1 0 23 1 7 81 chain 35542 chr5 180915260 + 153327309 153327726 L1P1 4361 + 1 418 75485 417 chain 50135 chr5 180915260 + 153327735 153328305 L1PA4 6152 + 5583 6152 58917 399 4 5 160 2 0 5 chain 41781 chr5 180915260 + 153341050 153341531 L1PA4 6152 - 9 497 66924 12 1 0 43 0 2 196 0 6 229 chain 51735 chr5 180915260 + 153341541 153342194 L1PA8 5853 - 10 657 57799 83 1 0 19 3 2 49 4 3 78 2 0 45 1 0 42 0 1 305 2 1 19 chain 66442 chr5 180915260 + 153352233 153352964 L1PA4 6152 + 5407 6143 49898 361 0 5 370 chain 4215 chr5 180915260 + 153376592 153376813 L1MB7 1623 + 1143 1337 204349 37 10 8 9 5 0 10 122 103 13 1 0 14 chain 4863 chr5 180915260 + 153388268 153388351 Tigger4b 360 + 280 359 196655 18 3 0 25 6 5 31 chain 317565 chr5 180915260 + 153394918 153399414 L1PB1 5432 + 33 4289 12695 17 8 10 43 12 15 135 21 20 138 0 1 70 0 1 125 1 0 147 0 6 71 10 13 195 0 2 40 1 0 210 14 0 78 1 3 37 0 1 17 7 9 100 0 4 297 316 0 77 0 4 166 0 1 66 0 11 51 2 3 6 0 1 26 0 3 53 0 11 16 15 14 153 1 0 82 0 5 233 2 1 21 1 0 88 0 4 329 0 1 46 2 0 160 0 5 46 4 0 16 0 5 21 7 22 144 0 7 121 0 1 396 0 1 34 chain 294108 chr5 180915260 + 153399414 153402852 L1PA6 6164 + 2703 6158 13744 47 0 5 254 7 5 254 0 5 33 1 0 1427 4 8 274 3 12 1125 3 0 6 chain 9497 chr5 180915260 + 153449018 153449135 L1MA3 4352 + 3950 4067 163090 117 chain 79703 chr5 180915260 + 153452553 153453444 MER11D 897 - 0 897 43732 119 0 1 207 0 5 565 chain 8805 chr5 180915260 + 153471498 153471767 MLT1D 503 + 27 319 166621 81 0 5 25 143 161 20 chain 20344 chr5 180915260 + 153500014 153500274 Tigger1 2417 + 1287 1552 126086 112 0 5 148 chain 533184 chr5 180915260 + 153501394 153508535 L1PA7 6471 + 1 6461 3824 248 10 14 149 31 4 574 0 1 257 0 6 3 6 0 501 1 0 18 0 1 131 1 0 127 1 0 605 0 1 701 1 2 277 8 9 331 9 0 8 0 2 22 53 19 54 316 0 508 1 0 4 0 1 120 3 2 84 0 1 827 9 8 136 304 0 174 0 1 154 2 0 151 0 4 69 1 0 151 chain 10062 chr5 180915260 + 153547351 153547521 MER4C 627 - 477 623 160263 66 36 12 68 chain 11136 chr5 180915260 + 153565909 153566140 Tigger3a 397 - 20 258 155682 33 78 81 83 0 4 37 chain 22924 chr5 180915260 + 153568196 153568459 AluSc 308 - 22 285 115987 263 chain 25001 chr5 180915260 + 153575473 153575772 AluSp 311 - 3 301 104773 131 1 0 167 chain 20477 chr5 180915260 + 153605462 153605695 L1PA4 6152 + 5910 6143 125692 233 chain 24644 chr5 180915260 + 153607432 153607804 MSTA 426 + 29 417 106755 84 1 19 27 7 11 35 31 25 187 chain 263830 chr5 180915260 + 153625384 153628335 L1PA4 6152 - 15 2967 15493 1596 1 0 109 0 1 99 2 0 166 0 1 365 0 1 332 0 1 281 chain 27630 chr5 180915260 + 153632791 153633104 L1PA4 6152 + 5830 6152 94265 248 0 10 59 1 0 5 chain 7028 chr5 180915260 + 153705547 153705635 L1MB7 1623 + 0 88 177269 88 chain 28007 chr5 180915260 + 153763413 153763781 THE1C 375 - 0 366 92976 189 4 5 56 3 0 116 chain 3124 chr5 180915260 + 153790121 153790156 MER45B 1037 - 478 513 222492 35 chain 2915 chr5 180915260 + 153820075 153820108 MLT2D 439 - 3 36 226783 33 chain 56275 chr5 180915260 + 153821037 153821756 MER4A 717 + 0 715 54976 361 0 4 29 19 7 279 0 4 31 chain 6003 chr5 180915260 + 153887213 153887295 LTR7C 471 + 367 449 185215 5 0 1 4 1 0 72 chain 4031 chr5 180915260 + 153895237 153895282 MER20 218 + 39 84 206903 45 chain 13742 chr5 180915260 + 153908286 153908444 L1PA5 6144 + 5985 6143 145460 158 chain 17536 chr5 180915260 + 153933616 153933967 L1PB1 5432 - 10 326 134168 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 9 2 0 12 18 9 6 3 0 15 1 0 39 8 7 14 3 1 52 2 0 5 11 7 12 1 0 10 1 0 19 3 0 9 chain 30436 chr5 180915260 + 153935716 153936034 AluYb9 318 - 0 318 83565 318 chain 23456 chr5 180915260 + 153962721 153963002 AluSp 311 + 8 287 113341 29 2 0 250 chain 33498 chr5 180915260 + 153971847 153972284 L1PA8 5853 - 0 428 78412 93 2 1 18 3 2 44 2 0 16 1 0 69 2 0 45 2 1 49 1 0 90 chain 2957 chr5 180915260 + 153976680 153976715 MIR 256 - 92 127 225919 35 chain 3668 chr5 180915260 + 153976983 153977073 MIRb 242 + 53 143 212431 14 32 33 39 1 0 4 chain 16144 chr5 180915260 + 153993324 153993543 AluSq2 311 + 6 227 137919 127 0 1 5 12 13 75 chain 189083 chr5 180915260 + 153995412 153997486 L1PA3long 6157 + 4083 6157 20137 2074 chain 4215 chr5 180915260 + 154000377 154000545 MLT1K 546 + 347 512 204355 24 1 0 12 80 76 16 5 7 30 chain 22888 chr5 180915260 + 154000682 154001046 THE1B 368 - 0 368 116151 38 24 24 66 8 16 10 25 22 23 1 0 169 chain 4746 chr5 180915260 + 154015187 154015293 MER3 215 + 48 172 197953 15 2 9 36 10 11 11 7 17 25 chain 85095 chr5 180915260 + 154015512 154016537 LTR5B 1012 - 0 1012 41481 256 2 1 609 14 0 43 0 2 101 chain 134944 chr5 180915260 + 154017388 154019594 HERVK-int 6823 - 298 2389 27023 4 1 0 13 1 0 4 7 6 23 4 2 8 1 0 8 4 0 4 2 0 10 12 8 10 2 0 8 8 3 29 2 0 11 1 0 3 1 0 12 1 0 13 213 127 19 1 0 11 17 11 23 1 0 6 2 0 76 1 0 4 1 0 7 20 16 40 1 0 32 1 0 92 2 1 33 1 0 101 1 0 22 1 0 89 0 1 6 1 0 102 15 13 294 0 5 44 19 12 161 1 0 204 7 0 6 0 7 27 1 27 293 chain 86947 chr5 180915260 + 154023207 154024215 LTR5B 1012 - 0 1010 40804 909 0 2 99 chain 2641 chr5 180915260 + 154027684 154027754 Charlie18a 321 + 125 197 231160 12 21 25 16 2 0 19 chain 24893 chr5 180915260 + 154039422 154039728 AluSp 311 - 5 310 105392 194 6 5 106 chain 24049 chr5 180915260 + 154084694 154085573 L1PA15 4387 + 3848 4298 110050 42 4 2 40 0 2 70 449 0 101 1 0 25 63 87 39 17 14 28 chain 4148 chr5 180915260 + 154085234 154085285 HY1 111 + 58 111 205258 25 0 1 21 0 1 5 chain 171638 chr5 180915260 + 154087140 154089739 Charlie3 2679 - 11 2661 21864 47 3 4 14 3 0 70 6 58 4 0 1 142 5 1 83 0 3 229 5 0 171 1 9 72 0 11 172 350 291 247 0 1 122 0 1 203 0 1 8 0 2 59 23 6 152 0 58 345 16 17 30 1 0 16 chain 22900 chr5 180915260 + 154111313 154111596 AluSc 308 + 6 295 116109 100 1 7 182 chain 29794 chr5 180915260 + 154124186 154124496 AluYa5 310 - 0 310 85463 310 chain 21730 chr5 180915260 + 154126989 154127274 AluSp 311 + 8 294 121275 16 3 0 139 0 9 52 3 0 65 2 0 5 chain 6691 chr5 180915260 + 154157217 154157366 L1MA3 4352 + 4171 4325 179748 28 13 17 19 4 0 23 2 0 24 4 12 16 5 4 11 chain 25334 chr5 180915260 + 154157543 154157837 AluY 311 + 4 300 103047 127 0 2 167 chain 25217 chr5 180915260 + 154159065 154159356 AluSp 311 - 9 300 103649 291 chain 23893 chr5 180915260 + 154160884 154161181 AluY 311 + 13 305 110936 54 0 1 197 1 0 25 2 0 10 3 0 5 chain 9762 chr5 180915260 + 154184923 154185082 Tigger2a 444 - 278 438 161788 50 1 13 47 4 5 13 12 0 32 chain 2773 chr5 180915260 + 154187479 154187597 L1MB8 1703 - 847 985 229134 20 74 94 24 chain 13819 chr5 180915260 + 154192377 154192554 THE1C 375 - 194 371 145185 93 0 1 53 1 0 30 chain 5129 chr5 180915260 + 154303520 154303717 MER33 330 - 53 259 193794 4 1 0 18 15 0 12 0 18 24 89 96 34 chain 6310 chr5 180915260 + 154306240 154306323 MER30 238 - 0 83 182713 65 0 1 4 1 0 13 chain 38925 chr5 180915260 + 154309516 154310010 LTR10F 562 + 0 562 70835 92 1 0 56 0 87 48 19 0 129 0 1 149 chain 45711 chr5 180915260 + 154318672 154319232 LTR6B 557 - 0 557 62307 104 5 6 92 0 1 62 4 0 99 0 1 136 8 6 50 chain 64412 chr5 180915260 + 154355308 154356155 LTR12 884 - 0 884 50836 154 0 13 291 0 2 46 2 0 36 41 0 186 0 66 65 1 0 25 chain 2666 chr5 180915260 + 154355837 154355878 LTR12 884 - 699 740 154009 41 chain 133509 chr5 180915260 + 154377799 154379382 L1PA7 6471 - 4 1593 27316 73 8 1 85 1 0 296 0 2 34 1 2 158 2 7 109 0 2 74 0 3 629 1 2 112 chain 44007 chr5 180915260 + 154385707 154386580 L1PA7 6471 - 1 557 64197 11 2 0 143 0 1 60 0 19 141 334 0 32 1 0 149 chain 332707 chr5 180915260 + 154411269 154417543 L1PB1 5432 - 12 4564 12098 16 1 0 13 1 0 21 70 93 41 2 1 14 2 1 53 2 0 9 4 0 12 1 0 12 1 0 13 1731 18 109 0 3 174 4 12 13 8 0 87 1 4 77 0 3 15 0 1 55 1 0 245 2 1 76 0 1 4 1 0 115 1 7 102 0 1 41 2 0 231 3 1 53 0 3 5 3 0 43 21 19 337 26 1 82 1 0 89 16 17 68 0 1 165 1 0 463 0 4 142 1 0 147 17 18 127 0 1 373 14 10 41 1 0 33 0 18 68 8 0 273 1 0 59 0 1 122 14 0 74 chain 23826 chr5 180915260 + 154423774 154424111 THE1B 368 - 26 368 111332 101 1 0 9 1 0 18 0 4 9 0 3 9 15 16 4 1 0 169 chain 56071 chr5 180915260 + 154424246 154425123 MER4D1 891 + 0 880 55078 24 11 12 255 1 0 4 1 2 74 0 1 43 1 0 15 1 0 38 14 32 134 0 1 4 1 0 18 27 16 58 18 7 42 0 6 22 18 19 53 chain 174135 chr5 180915260 + 154438431 154440357 L1PA3long 6157 - 0 1928 21579 188 0 1 146 1 2 1591 chain 28053 chr5 180915260 + 154450627 154450982 THE1A 353 - 0 353 92813 155 1 0 88 1 0 25 0 1 13 1 0 71 chain 130383 chr5 180915260 + 154450987 154452548 THE1A-int 1579 - 5 1578 27994 933 0 1 399 7 18 222 chain 26624 chr5 180915260 + 154452561 154452904 THE1A 353 - 12 353 97578 143 1 0 88 1 0 110 chain 56280 chr5 180915260 + 154458316 154458949 L1PA5 6144 + 5515 6142 54972 620 6 0 7 chain 43985 chr5 180915260 + 154461083 154461792 LTR8 732 - 7 722 64218 56 0 1 179 104 103 86 0 5 146 16 20 65 3 0 54 chain 31097 chr5 180915260 + 154463235 154463634 MER57B1 401 - 0 401 82347 115 10 12 274 chain 25373 chr5 180915260 + 154477048 154477338 AluY 311 + 11 302 102814 121 0 1 169 chain 19896 chr5 180915260 + 154487797 154488142 MSTA 426 + 27 426 127497 50 1 0 29 22 50 50 4 0 6 0 1 9 25 35 39 5 25 105 chain 4980 chr5 180915260 + 154494984 154495170 LTR12C 1709 + 651 718 195367 11 119 0 56 chain 126843 chr5 180915260 + 154501725 154503125 L1PA3long 6157 - 1 1403 28851 269 0 1 67 0 1 244 0 1 273 1 0 546 chain 99541 chr5 180915260 + 154503125 154504227 L1PA3long 6157 + 3631 4732 36875 176 0 1 621 3 0 211 0 1 91 chain 537920 chr5 180915260 + 154537164 154543303 L1PA4 6152 - 9 6152 3163 130 0 7 10 7 0 488 6 0 421 1 0 727 0 4 105 0 1 416 0 3 648 1 0 17 0 1 1731 4 1 1249 17 23 161 chain 549743 chr5 180915260 + 154547898 154554047 L1PA3long 6157 + 0 6157 1483 126 0 14 14 24 10 1558 9 8 1485 1 0 907 0 2 958 0 6 293 1 2 631 0 1 142 chain 22187 chr5 180915260 + 154554695 154554951 L1PA5 6144 - 7 267 119413 165 1 5 90 chain 22842 chr5 180915260 + 154563214 154563575 THE1C 375 + 0 375 116385 84 0 1 35 1 0 59 0 2 5 45 56 13 10 11 109 chain 17517 chr5 180915260 + 154578546 154578923 MSTB 430 + 7 404 134217 82 20 21 15 19 31 31 84 91 126 chain 71376 chr5 180915260 + 154581117 154582182 LTR12 884 - 0 884 47756 119 0 8 143 2 0 237 2 0 56 107 0 14 78 0 307 chain 9013 chr5 180915260 + 154581676 154581783 LTR12 884 - 695 802 141341 107 chain 3117 chr5 180915260 + 154581797 154581834 LTR12 884 - 816 853 141341 37 chain 374743 chr5 180915260 + 154582193 154588988 L1PB1 5432 + 340 5392 10932 59 4 3 7 8 0 986 1 0 7 2 0 5 24 11 91 0 8 10 8 0 69 0 6 123 1 0 24 466 1 120 1 0 43 0 2 134 1 13 26 781 0 406 3 0 348 1 0 658 0 4 225 0 3 224 1 0 123 4 1 34 352 0 122 0 8 160 8 9 17 0 1 22 0 2 159 10 7 338 3 4 43 276 152 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 7 14 5 14 7 4 18 3 1 25 1 0 22 chain 37268 chr5 180915260 + 154583622 154584082 LTR71A 459 - 0 459 73142 14 2 0 243 1 2 200 chain 12633 chr5 180915260 + 154585021 154585175 L1PA7 6471 + 6230 6386 149716 85 0 2 69 chain 262815 chr5 180915260 + 154603837 154606848 L1PA6 6164 + 3149 6161 15543 34 7 8 2970 chain 276308 chr5 180915260 + 154621704 154625878 L1PB2 3958 - 122 3887 14855 61 1 0 94 1 0 64 1 0 79 1 0 86 4 0 13 10 8 53 7 1 14 11 25 29 2 0 92 16 18 275 1 0 443 2 0 256 0 3 253 9 13 74 0 4 4 383 0 14 2 3 207 0 3 56 2 0 26 32 24 292 3 0 69 0 1 400 11 13 224 0 1 81 10 5 108 0 2 97 0 1 18 5 2 40 5 4 8 8 0 35 2 0 32 11 5 19 5 0 13 chain 25101 chr5 180915260 + 154623664 154624042 THE1C 375 - 0 375 104287 26 1 0 142 26 21 5 0 2 88 7 8 83 chain 4346 chr5 180915260 + 154626110 154626159 LTR12D 1347 - 123 172 202649 49 chain 26918 chr5 180915260 + 154627847 154628136 AluYb9 318 + 29 318 96559 289 chain 2361 chr5 180915260 + 154636960 154637004 MIR 256 + 105 148 234689 15 6 5 23 chain 28807 chr5 180915260 + 154646433 154646737 AluYa5 310 - 7 310 89859 177 1 0 126 chain 29308 chr5 180915260 + 154676273 154676590 AluYb8 318 - 1 318 87528 317 chain 7636 chr5 180915260 + 154708428 154708565 MER44B 551 - 29 167 173317 31 37 38 69 chain 49832 chr5 180915260 + 154727137 154727728 LTR10C 591 + 0 591 59131 34 14 12 464 0 2 79 chain 17701 chr5 180915260 + 154735806 154736007 L1PA4 6152 + 5942 6143 133699 201 chain 241796 chr5 180915260 + 154754790 154757527 L1PA4 6152 - 16 2755 16679 229 7 0 10 0 7 596 4 1 7 0 1 126 0 4 1758 chain 4229 chr5 180915260 + 154767293 154767366 MER58A 224 - 109 182 204188 13 11 7 8 0 4 41 chain 268055 chr5 180915260 + 154783094 154786661 L1PBa 3878 + 177 3777 15288 33 3 2 12 19 17 283 1 0 246 36 32 31 0 3 134 0 5 9 2 3 8 0 3 32 6 5 177 0 6 32 0 1 194 2 4 161 14 22 12 7 12 87 0 3 596 1 2 115 0 1 4 1 0 115 0 2 34 0 1 95 7 1 336 0 1 107 0 16 52 6 0 454 0 6 31 2 1 21 2 0 11 19 13 11 1 0 5 chain 4005 chr5 180915260 + 154787244 154787327 L1PB1 5432 + 5309 5387 207314 17 3 1 5 1 0 14 2 1 23 1 0 17 chain 2588 chr5 180915260 + 154787332 154787364 L1PB1 5432 + 5391 5422 231829 13 1 0 18 chain 3195 chr5 180915260 + 154805974 154806054 MER20 218 - 41 125 221018 15 15 16 19 9 12 22 chain 82804 chr5 180915260 + 154814814 154815713 L1PA3long 6157 - 0 899 42417 899 chain 73439 chr5 180915260 + 154826414 154827226 L1PA4 6152 - 9 821 46819 812 chain 5513 chr5 180915260 + 154838863 154838964 LTR16A 446 + 284 381 189917 15 12 14 35 6 0 33 chain 5596 chr5 180915260 + 154862407 154862488 L1PA2 6032 - 5 75 189122 9 11 0 61 chain 36865 chr5 180915260 + 154868355 154868872 L1PREC2 3366 - 2060 2587 73706 13 2 0 148 1 6 114 0 1 67 6 9 37 0 1 32 8 10 89 chain 33020 chr5 180915260 + 154868982 154869431 MER4A1 472 - 0 472 79184 226 5 26 45 0 1 64 10 12 11 1 0 87 chain 18606 chr5 180915260 + 154884662 154885011 THE1D 372 - 28 372 131205 129 52 53 23 8 10 50 35 27 52 chain 94567 chr5 180915260 + 154945295 154946675 L1PA15 4387 + 2485 3870 38191 75 1 0 204 0 6 71 5 7 119 1 0 8 13 14 12 1 0 5 6 5 64 5 4 71 0 4 9 4 0 5 3 0 17 6 5 33 12 8 242 12 21 157 0 5 157 2 0 16 4 0 33 0 1 7 chain 27378 chr5 180915260 + 154949010 154949434 MSTA 426 - 0 426 95028 163 70 73 173 1 0 17 chain 29403 chr5 180915260 + 154950800 154951112 AluYb8 318 - 6 318 87053 312 chain 130627 chr5 180915260 + 154965368 154966874 LTR12C 1709 - 0 1709 27939 73 1 0 164 0 1 243 0 4 106 3 1 5 1 0 91 0 200 421 0 1 135 0 1 263 chain 92876 chr5 180915260 + 155018988 155020052 L1PA5 6144 - 0 1058 38694 140 7 0 632 1 0 70 6 8 208 chain 14151 chr5 180915260 + 155026710 155026903 Tigger3a 397 - 64 258 144036 22 8 9 163 chain 409330 chr5 180915260 + 155036621 155041081 L1PA2 6032 + 1570 6032 9820 1295 0 1 2829 0 1 336 chain 3157 chr5 180915260 + 155045788 155045978 MLT1H1 527 + 11 235 221796 25 35 36 12 93 126 25 chain 4852 chr5 180915260 + 155058533 155058587 HUERS-P2-int 2744 + 2265 2319 196767 54 chain 11277 chr5 180915260 + 155070857 155070988 L1PA2 6032 - 1 132 155138 131 chain 48472 chr5 180915260 + 155088462 155089023 L1PA7 6471 - 1 559 60137 4 1 0 7 2 0 547 chain 533101 chr5 180915260 + 155093518 155099651 L1PA4 6152 - 11 6151 3835 175 0 1 20 5 6 562 5 6 412 0 1 557 0 1 52 0 4 173 0 1 458 0 1 546 1 0 586 0 3 2408 18 12 155 chain 23620 chr5 180915260 + 155137322 155137679 THE1B 368 + 0 368 112471 44 29 44 78 7 6 118 3 0 78 chain 29401 chr5 180915260 + 155237816 155238126 AluYa5 310 - 0 310 87064 310 chain 80197 chr5 180915260 + 155238623 155239520 MER11D 897 - 0 897 43504 113 0 1 500 1 0 283 chain 23346 chr5 180915260 + 155271890 155272173 L1PA7 6471 - 2 286 113948 155 5 6 123 chain 8411 chr5 180915260 + 155272446 155272537 5S 121 + 0 91 168783 91 chain 5619 chr5 180915260 + 155292013 155292086 Charlie1a 1436 - 5 78 188883 73 chain 20748 chr5 180915260 + 155303058 155303280 L1PA2 6032 - 0 222 124794 222 chain 28140 chr5 180915260 + 155332607 155332961 THE1A 353 + 0 353 92503 110 1 0 88 1 0 96 0 1 58 chain 32428 chr5 180915260 + 155392520 155392914 LTR3 431 + 27 422 80154 317 0 1 77 chain 5797 chr5 180915260 + 155463700 155463772 LTR39 781 - 668 741 187169 43 0 1 29 chain 150725 chr5 180915260 + 155474839 155476541 L1PA4 6152 - 0 1707 24513 6 0 5 85 0 1 610 2 0 195 0 1 804 chain 4671 chr5 180915260 + 155476541 155476600 L1P2 5180 + 1992 2051 188858 59 chain 3893 chr5 180915260 + 155479726 155479775 MER45C 884 - 60 109 208987 49 chain 566178 chr5 180915260 + 155488941 155494976 L1HS 6032 - 0 6032 139 5352 4 0 607 0 1 72 chain 436936 chr5 180915260 + 155495140 155500000 L1PA3long 6157 - 0 4862 9130 7 0 1 4 0 5 1621 6 0 1309 1 2 761 0 1 1151 chain 10381 chr5 180915260 + 155500000 155500124 L1HS 6032 - 4865 4989 158780 124 chain 18430 chr5 180915260 + 155531948 155532166 L1PA5 6144 + 5925 6144 131690 74 1 2 143 chain 21626 chr5 180915260 + 155555530 155555875 THE1D 372 + 0 372 121671 124 0 3 33 3 4 16 46 49 35 1 21 87 chain 29313 chr5 180915260 + 155559468 155559777 AluYk12 309 - 0 309 87504 309 chain 21227 chr5 180915260 + 155561605 155561860 L1PA5 6144 + 5883 6139 123119 88 1 2 166 chain 90821 chr5 180915260 + 155570759 155571774 L1PA4 6152 - 11 1027 39346 846 0 1 169 chain 8849 chr5 180915260 + 155605052 155605195 MER47A 366 - 150 299 166380 83 21 27 39 chain 4008 chr5 180915260 + 155634588 155634661 MADE1 96 + 1 96 207258 19 15 37 39 chain 272325 chr5 180915260 + 155653103 155657575 L1PB1 5432 - 14 5360 15059 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 17 6 6 3 0 16 1 0 43 1 0 15 3 2 53 2 0 9 8 4 8 1 0 12 34 33 200 0 2 58 30 10 16 7 1 16 11 8 82 4 2 55 1 0 25 1 2 9 20 16 91 0 1 56 0 1 38 2 0 4 0 1 49 3 0 366 3 0 96 7 1471 433 5 4 140 0 4 307 9 12 128 16 7 96 523 12 369 0 5 55 0 1 266 0 1 29 13 14 38 18 0 89 1 0 13 1 0 34 13 14 192 5 6 38 0 5 41 chain 85766 chr5 180915260 + 155689561 155690973 L1PB1 5432 - 5 1325 41238 5 2 0 18 1 0 13 1 0 21 1 0 26 2 0 12 1 0 5 2 0 19 19 8 4 1 0 15 1 0 45 1 0 17 1 0 51 16 10 14 8 6 21 33 0 18 55 24 78 14 4 165 25 33 104 0 1 51 7 9 36 29 30 97 0 3 357 chain 26034 chr5 180915260 + 155695992 155696684 THE1A 353 - 0 353 99885 155 8 7 28 337 0 53 1 0 110 chain 17425 chr5 180915260 + 155697015 155697393 L1PREC2 3366 - 307 649 134449 11 2 0 38 6 4 35 31 21 4 1 0 24 2 0 17 5 0 14 32 24 12 3 0 5 1 0 34 0 1 9 1 0 54 3 1 34 chain 241508 chr5 180915260 + 155711108 155713835 L1PA4 6152 + 3413 6143 16696 95 0 1 1719 4 5 768 0 1 141 chain 53937 chr5 180915260 + 155724209 155724804 L1PA2 6032 + 5430 6026 56410 482 0 1 113 chain 25522 chr5 180915260 + 155731257 155731604 THE1B 368 + 7 368 102131 37 5 20 100 9 8 196 chain 24894 chr5 180915260 + 155733180 155733533 THE1B 368 + 1 368 105385 43 23 38 84 7 6 196 chain 3964 chr5 180915260 + 155739681 155739727 MIR 256 + 98 144 207919 46 chain 3280 chr5 180915260 + 155824272 155824405 MER58C 217 - 9 154 219366 20 82 94 31 chain 30199 chr5 180915260 + 155833851 155834250 MLT2A1 477 - 76 477 84195 8 4 0 8 1 3 59 1 0 150 1 5 25 0 1 142 chain 28759 chr5 180915260 + 155839794 155840106 AluYb8 318 - 8 318 90077 178 2 0 132 chain 16999 chr5 180915260 + 155843129 155843515 L1PB1 5432 + 5065 5423 135599 17 0 3 10 9 12 7 5 0 16 5 4 9 2 1 14 5 1 9 2 0 51 1 0 18 1 0 45 1 0 8 29 19 17 3 1 5 1 0 14 2 0 24 5 4 18 1 0 12 2 1 18 chain 24363 chr5 180915260 + 155897366 155897639 L1PA3long 6157 - 11 284 108305 273 chain 48816 chr5 180915260 + 155919573 155920170 L1PA7 6471 - 3 596 59865 7 5 0 145 2 0 5 14 17 419 chain 3680 chr5 180915260 + 155937559 155937604 MER58C 217 - 5 50 212243 45 chain 89116 chr5 180915260 + 155948052 155949360 L1PA6 6164 + 4845 6162 39956 79 14 12 160 55 54 161 1 0 6 6 14 41 38 40 54 23 24 444 3 5 223 chain 39833 chr5 180915260 + 155992562 155993032 L1PA7 6471 - 5 474 69575 164 1 0 4 0 1 192 1 0 108 chain 17011 chr5 180915260 + 155993032 155993255 L1PA7 6471 + 5634 5872 135561 64 0 2 96 5 18 58 chain 510465 chr5 180915260 + 156002942 156009065 L1PA6 6164 - 3 6164 6122 8 0 2 654 3 4 4 1 0 169 0 5 16 1 5 134 4 3 484 0 2 508 0 1 87 0 2 142 0 1 4 1 0 110 0 1 119 1 0 501 1 0 4 0 1 87 0 4 1371 0 1 132 6 20 146 3 4 39 1 0 474 0 4 441 1 0 267 1 0 4 10 11 121 0 1 63 chain 534777 chr5 180915260 + 156032065 156038199 L1PA4 6152 - 4 6151 3618 357 0 2 487 0 4 669 1 0 341 0 2 804 0 1 219 0 2 552 0 5 9 5 0 1649 0 2 302 7 8 732 chain 68924 chr5 180915260 + 156062261 156063047 L1PA4 6152 + 5357 6143 48847 786 chain 74680 chr5 180915260 + 156076039 156076876 L1PA4 6152 + 5309 6146 46174 837 chain 75694 chr5 180915260 + 156084716 156085684 LTR5_Hs 974 - 0 974 45655 103 20 18 19 8 15 164 1 0 187 0 1 177 0 1 289 chain 535790 chr5 180915260 + 156086464 156092928 HERVK-int 6823 - 241 6823 3477 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 20 13 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 8 20 14 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 58 9 297 3658 1 0 7 2 0 369 1 0 442 1 0 313 1 0 16 1 0 28 2 0 206 1 0 304 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 75777 chr5 180915260 + 156092928 156093896 LTR5_Hs 974 - 0 974 45606 103 20 18 19 8 15 164 1 0 187 0 1 177 0 1 289 chain 44614 chr5 180915260 + 156104158 156104711 L1PA5 6144 + 5616 6143 63464 252 24 0 128 0 1 134 3 0 12 chain 40238 chr5 180915260 + 156138742 156139263 MER41A 554 - 0 539 68964 169 0 7 116 4 5 178 1 11 53 chain 11478 chr5 180915260 + 156169658 156170037 MLT2B4 540 - 90 540 154390 68 119 183 17 58 64 66 19 20 32 chain 24570 chr5 180915260 + 156180554 156180906 THE1C 375 - 20 375 107144 106 9 3 12 4 6 34 7 8 8 0 1 37 1 5 115 0 1 19 chain 28983 chr5 180915260 + 156202723 156203094 THE1C 375 - 0 375 89075 229 0 4 142 chain 2907 chr5 180915260 + 156204559 156204591 MSTC 436 + 188 220 226909 32 chain 490286 chr5 180915260 + 156209841 156215950 L1PA6 6164 + 0 6149 7350 143 4 10 93 11 16 189 19 0 67 0 2 49 1 0 162 0 1 63 2 19 85 4 8 347 1 0 184 4 5 195 0 12 70 7 2 190 0 3 418 0 1 211 0 12 25 0 4 604 0 1 79 0 3 27 1 0 125 0 1 50 6 0 222 3 0 171 0 1 243 2 0 144 0 1 1116 0 1 541 0 1 96 1 2 134 chain 18713 chr5 180915260 + 156216014 156216248 L1PA6 6164 + 3527 3760 130916 176 5 4 53 chain 29400 chr5 180915260 + 156216248 156216591 L1PA6 6164 + 3774 4117 87073 343 chain 99959 chr5 180915260 + 156216591 156217787 L1PA6 6164 + 4118 5314 36788 458 0 1 450 9 8 4 1 0 37 0 1 237 chain 36169 chr5 180915260 + 156217787 156218200 L1PA6 6164 + 5315 5729 74677 73 0 1 340 chain 35297 chr5 180915260 + 156218200 156218634 L1PA6 6164 + 5730 6160 75801 288 1 0 136 3 0 6 chain 7274 chr5 180915260 + 156225560 156225647 L1PA8 5853 + 5760 5847 175623 87 chain 512233 chr5 180915260 + 156232889 156239806 L1PA6 6164 + 13 6162 5948 223 0 2 280 0 2 47 1 0 505 1 0 217 0 3 248 1 2 192 0 1 129 304 0 468 0 2 56 0 2 541 1 0 353 0 5 9 0 3 14 0 1 650 303 0 983 0 1 219 0 1 545 216 33 147 0 1 161 0 3 87 3 0 13 chain 8357 chr5 180915260 + 156239182 156239293 L1PA8 5853 + 5744 5853 169085 16 2 1 51 1 0 41 chain 23847 chr5 180915260 + 156241251 156241589 L1PA8 5853 + 5525 5853 111199 39 1 0 45 2 0 64 30 25 42 2 1 19 1 0 93 chain 28185 chr5 180915260 + 156254853 156255310 L1PA13 3608 + 3121 3548 92358 7 1 0 145 2 0 63 1 0 50 1 0 10 2 0 48 2 0 4 2 0 18 1 0 21 7 4 13 5 0 14 1 0 6 6 0 11 4 1 12 chain 111135 chr5 180915260 + 156299968 156301265 L1PA7 6471 - 4 1308 33903 8 2 0 143 0 1 183 1 2 36 1 0 392 0 2 31 0 3 42 0 3 458 chain 32122 chr5 180915260 + 156301265 156301652 L1PA7 6471 + 4777 5181 80515 297 1 18 89 chain 11324 chr5 180915260 + 156341933 156342116 MER30 238 + 30 230 154985 56 0 1 21 4 0 7 16 39 39 3 0 37 chain 115424 chr5 180915260 + 156366960 156368344 SVA_B 1603 + 0 1603 32635 18 17 26 22 0 5 600 36 39 100 0 204 278 1 0 4 0 1 301 2 0 5 chain 1742 chr5 180915260 + 156367617 156367652 SVA_B 1603 + 714 749 194339 35 chain 60957 chr5 180915260 + 156399845 156400884 L1PB1 5432 - 8 1012 52353 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 30 15 13 6 5 39 1 0 16 2 1 50 3 1 11 18 13 11 10 9 10 3 12 136 4 0 152 26 18 89 0 1 4 6 5 58 0 1 18 2 0 8 0 4 25 0 1 63 0 3 5 12 8 84 chain 29932 chr5 180915260 + 156404588 156404902 AluYb8 318 - 4 318 85017 314 chain 521942 chr5 180915260 + 156411156 156417901 L1PA7 6471 + 5 6467 4967 148 0 1 176 21 22 59 0 1 46 3 1 141 6 1 204 0 1 587 0 3 73 6 7 77 0 1 93 11 1 486 1 5 188 0 10 284 0 1 18 0 1 341 1 0 13 1 10 57 0 15 129 13 14 153 0 1 630 7 6 226 10 11 89 12 5 9 0 3 254 10 12 140 316 0 190 1 0 466 0 1 203 1 0 12 1 0 529 4 5 266 0 1 4 0 2 29 chain 31965 chr5 180915260 + 156426915 156427568 L1PB1 5432 - 9 649 80909 8 1 0 11 1 0 12 5 4 17 2 1 26 2 0 12 1 0 5 3 1 13 6 0 6 35 28 42 1 0 13 5 4 42 8 20 14 8 6 24 3 0 9 2 1 14 27 29 17 0 7 7 9 3 12 0 1 208 0 1 22 chain 77967 chr5 180915260 + 156438145 156439073 L1PA6 6164 + 4100 5027 44536 884 9 8 35 chain 42417 chr5 180915260 + 156439719 156440196 L1PA6 6164 + 5045 5522 66123 477 chain 5848 chr5 180915260 + 156440204 156440465 L1PA6 6164 + 5523 5784 58220 261 chain 139026 chr5 180915260 + 156440514 156442109 SVA_D 2077 + 0 2077 26293 13 5 0 527 0 40 145 0 3 21 14 11 156 1 265 38 0 1 3 0 177 43 5 10 624 chain 8469 chr5 180915260 + 156442109 156442487 L1PA6 6164 + 5784 6162 58220 369 0 1 4 1 0 4 chain 41369 chr5 180915260 + 156442891 156443387 L1PA5 6144 + 5633 6144 67444 358 1 8 55 0 8 82 chain 25452 chr5 180915260 + 156467025 156467335 AluSp 311 + 0 308 102444 26 2 0 282 chain 22420 chr5 180915260 + 156469217 156469472 AluY 311 + 46 302 118371 86 0 1 169 chain 3931 chr5 180915260 + 156487847 156487891 MER3 215 + 66 110 208388 44 chain 16951 chr5 180915260 + 156499247 156499463 AluSp 311 - 83 300 135727 78 3 0 5 4 7 42 0 1 84 chain 19342 chr5 180915260 + 156502313 156502616 AluSg 306 + 8 305 129102 126 47 43 36 0 1 42 6 3 46 chain 77357 chr5 180915260 + 156511007 156511869 L1PA3long 6157 - 15 877 44721 862 chain 85615 chr5 180915260 + 156511869 156512798 L1PA3long 6157 + 4355 5286 41299 5 0 2 924 chain 19118 chr5 180915260 + 156516344 156516560 AluSp 311 + 79 295 129772 216 chain 24415 chr5 180915260 + 156537294 156537581 AluSp 311 - 22 311 108000 147 0 1 123 0 1 17 chain 22503 chr5 180915260 + 156564010 156564286 AluSp 311 - 14 290 118014 107 1 0 69 0 1 99 chain 23960 chr5 180915260 + 156574673 156574969 AluSp 311 + 10 311 110566 99 0 5 197 chain 2560 chr5 180915260 + 156577115 156577162 MER96B 391 - 51 85 232368 7 13 0 27 chain 89419 chr5 180915260 + 156596543 156597625 MER11B 1079 + 0 1074 39837 264 4 1 330 1 0 177 8 2 147 3 4 128 1 2 19 chain 9551 chr5 180915260 + 156629524 156629720 L1PA15 4387 - 97 283 162830 14 14 11 48 2 1 11 9 5 15 5 4 50 1 0 27 chain 65715 chr5 180915260 + 156632697 156633924 L1PREC2 3366 - 1215 2163 50241 50 1 2 125 11 13 67 0 5 19 294 1 76 0 3 25 0 1 57 3 0 5 3 6 204 1 0 10 10 11 51 0 3 107 1 0 54 9 9 44 chain 22204 chr5 180915260 + 156637558 156637794 L1PA2 6032 - 4 240 119331 236 chain 12849 chr5 180915260 + 156661605 156661758 L1PA7 6471 + 6133 6298 148846 141 0 12 12 chain 12725 chr5 180915260 + 156661795 156661956 L1PA7 6471 + 6311 6466 149349 143 6 0 12 chain 5003 chr5 180915260 + 156668248 156668301 MSTB 430 - 377 430 195108 53 chain 14047 chr5 180915260 + 156704838 156705017 Tigger3a 397 - 71 258 144390 69 2 0 99 0 10 9 chain 27373 chr5 180915260 + 156709086 156709489 MSTB 430 - 0 404 95038 76 14 13 127 12 7 5 0 1 22 3 2 20 0 6 28 0 1 96 chain 14876 chr5 180915260 + 156732137 156732324 L1PB2 3958 - 120 305 141694 63 1 0 96 1 0 26 chain 137432 chr5 180915260 + 156776153 156778142 L1PB1 5432 - 10 2041 26569 4 1 0 17 1 0 6 9 8 17 1 0 22 2 0 12 13 10 18 36 27 13 1 0 32 2 3 12 3 1 51 3 1 9 18 13 8 1 0 24 13 11 35 0 1 60 0 1 10 1 4 63 1 0 129 1 2 166 22 9 148 0 4 249 4 0 107 0 1 26 1 2 163 3 0 191 2 4 72 7 86 179 chain 24778 chr5 180915260 + 156823186 156823530 THE1A 353 - 2 352 106010 16 6 7 27 0 2 101 2 1 89 2 1 65 0 5 36 chain 118276 chr5 180915260 + 156823536 156825073 THE1A-int 1579 - 5 1562 31701 279 1 2 97 0 1 213 0 3 30 0 2 47 15 14 119 0 1 90 14 13 221 4 6 186 11 17 77 0 3 43 0 3 90 chain 27105 chr5 180915260 + 156825088 156825447 THE1A 353 - 0 353 95925 18 3 0 3 1 0 118 3 0 5 5 7 92 1 0 110 chain 114673 chr5 180915260 + 156837752 156839600 L1PA14 3548 + 1641 3456 32892 63 8 1 93 8 0 8 39 8 36 2 1 41 11 10 46 0 6 10 3 0 165 1 0 111 6 9 120 0 5 74 8 12 24 1 4 22 7 26 34 0 3 14 1 0 37 1 4 5 3 0 53 0 2 211 0 2 37 3 1 9 1 0 5 9 7 40 2 0 5 2 0 53 1 0 48 12 8 17 2 0 6 1 0 4 1 0 80 1 0 9 16 15 87 1 0 10 10 8 27 33 30 7 1 0 42 chain 13408 chr5 180915260 + 156843831 156844069 L1PB1 5432 - 113 326 146680 22 15 4 13 1 0 43 1 0 18 1 0 52 2 0 8 5 1 12 1 0 8 1 0 24 3 0 8 chain 54507 chr5 180915260 + 156844519 156848950 L1P1 4361 + 4 2344 16252 315 1 0 407 0 12 688 2106 0 19 0 4 895 chain 150595 chr5 180915260 + 156845946 156847659 SVA_D 2077 + 24 2077 24528 892 0 36 40 0 1 11 0 305 35 1 3 41 0 1 49 0 1 319 4 0 301 2 0 18 chain 18717 chr5 180915260 + 156848950 156849154 L1PA5 6144 + 5928 6132 130908 204 chain 493845 chr5 180915260 + 156851370 156857474 L1PA6 6164 + 0 6160 7184 50 0 5 109 0 1 36 0 1 48 1 0 7 4 0 5 1 5 192 6 6 44 2 1 20 16 14 38 2 0 264 5 7 75 1 30 280 0 1 35 9 14 65 11 21 87 5 1 123 0 1 270 0 4 469 1 2 195 0 2 54 21 27 581 5 1 83 0 2 24 1 0 137 0 8 82 1 0 774 0 2 722 3 4 161 7 12 356 22 8 438 7 0 6 1 8 142 chain 16901 chr5 180915260 + 156857474 156857706 Tigger2 2703 + 901 1135 135845 42 4 3 109 1 4 76 chain 9974 chr5 180915260 + 156858451 156858581 BC200 147 - 19 147 160702 6 2 0 122 chain 11509 chr5 180915260 + 156862212 156862366 MSTA 426 - 228 410 154254 42 0 4 13 1 4 6 0 21 92 chain 12092 chr5 180915260 + 156863863 156864846 L1P1 4361 + 3347 4328 16252 804 1 0 154 1 0 23 chain 3721 chr5 180915260 + 156875723 156875783 L1MB7 1623 - 203 258 211619 33 4 0 17 1 0 5 chain 5367 chr5 180915260 + 156884606 156884673 LTR64 526 - 0 69 191343 11 0 2 56 chain 3348 chr5 180915260 + 156898174 156898302 MIR 256 + 22 193 218076 31 5 0 6 62 110 24 chain 48399 chr5 180915260 + 156909665 156910225 L1PA7 6471 + 5911 6467 60184 346 4 0 210 chain 28751 chr5 180915260 + 156930180 156930511 L1PA5 6144 + 5814 6144 90112 184 1 0 146 chain 25730 chr5 180915260 + 156931851 156932147 AluY 311 + 6 303 101160 126 0 1 170 chain 14536 chr5 180915260 + 156954015 156954191 THE1D 372 - 0 177 142783 96 0 1 80 chain 6338 chr5 180915260 + 156970022 156970124 LTR37B 484 + 224 327 182488 30 14 15 58 chain 20210 chr5 180915260 + 156978451 156978735 L1MA1 4479 + 3887 4163 126498 60 1 0 5 2 0 127 2 1 27 2 0 35 1 0 9 1 0 12 chain 3613 chr5 180915260 + 156983161 156983202 MER41A 554 - 376 417 213445 41 chain 4203 chr5 180915260 + 157008208 157008256 MLT1B 390 - 59 107 204500 48 chain 45318 chr5 180915260 + 157022692 157023297 L1PA16 3655 + 2992 3592 62695 55 6 9 160 0 1 73 3 1 45 4 0 239 5 2 15 chain 4527 chr5 180915260 + 157037216 157037279 L1MA4 2864 - 55 117 200479 4 0 1 38 2 0 19 chain 218962 chr5 180915260 + 157048072 157050603 L1PA7 6471 + 3921 6459 17948 1705 0 3 176 0 3 633 0 1 17 chain 25541 chr5 180915260 + 157063853 157064164 AluSp 311 + 0 305 102046 129 6 0 176 chain 44499 chr5 180915260 + 157081545 157082098 MER41A 554 + 0 553 63580 553 chain 41590 chr5 180915260 + 157085765 157086296 MER41A 554 + 6 554 67168 316 0 1 68 0 13 45 0 3 102 chain 233614 chr5 180915260 + 157089915 157092608 L1PA4 6152 + 3436 6143 17106 75 2 9 836 0 4 132 6 7 139 0 5 456 7 0 201 1 5 838 chain 3026 chr5 180915260 + 157118857 157118894 MADE1 96 - 3 40 224450 37 chain 5076 chr5 180915260 + 157120403 157120661 MER41A 554 + 0 260 73282 118 8 10 132 chain 116771 chr5 180915260 + 157120665 157122045 LTR12C 1709 + 0 1709 32198 211 4 5 434 0 278 143 0 47 99 7 11 399 1 0 82 chain 4860 chr5 180915260 + 157122045 157122292 MER41A 554 + 260 554 73282 61 0 42 105 1 6 80 chain 7881 chr5 180915260 + 157147815 157147950 HUERS-P3b-int 2065 - 13 124 171808 13 32 8 90 chain 522042 chr5 180915260 + 157147962 157154135 L1PA6 6164 + 0 6162 4955 74 6 14 309 0 11 6 11 0 108 1 0 456 1 0 93 0 1 374 1 2 885 11 4 859 0 1 318 0 1 186 0 1 240 1 2 23 14 0 6 13 0 110 5 6 126 0 2 148 0 4 181 0 4 759 0 5 35 1 0 7 0 1 794 5 0 6 chain 138900 chr5 180915260 + 157154184 157156451 HUERS-P3b-int 2065 - 113 2052 26330 11 1 0 58 5 1 63 4 1 16 2 0 73 3 1 91 1 5 18 1 0 12 2 1 66 0 1 13 8 6 44 1 0 47 336 23 15 0 1 163 1 2 264 0 3 97 1 0 28 1 0 54 14 18 70 4 0 64 0 1 14 0 6 64 13 0 12 0 1 159 1 2 45 0 1 223 3 0 81 chain 24419 chr5 180915260 + 157169389 157169692 AluSg7 307 - 5 307 107973 43 2 1 4 0 1 44 6 5 204 chain 9026 chr5 180915260 + 157249220 157249351 L1PA5 6144 - 0 145 165463 54 0 11 51 10 13 16 chain 15757 chr5 180915260 + 157249365 157249551 THE1A 353 + 165 353 139088 114 0 2 72 chain 544 chr5 180915260 + 157296181 157296256 MER44D 709 - 65 140 157196 75 chain 19970 chr5 180915260 + 157296263 157296564 THE1B 368 + 0 306 127233 169 1 0 21 7 10 14 0 4 6 7 6 10 1 0 28 1 2 36 chain 638 chr5 180915260 + 157297576 157297664 MER44D 709 - 169 255 157196 70 2 0 16 chain 3749 chr5 180915260 + 157306942 157306984 LTR12C 1709 + 676 718 211159 42 chain 398285 chr5 180915260 + 157307509 157312452 HERV9-int 5642 + 0 4811 10161 164 2 0 431 0 3 108 4 0 46 21 6 37 3 2 93 3 0 217 81 0 19 9 8 125 5 0 6 0 5 6 0 2 1378 6 7 370 2 3 454 37 0 628 0 4 12 0 3 5 6 3 259 13 14 393 chain 3207 chr5 180915260 + 157314512 157314547 LTR12C 1709 + 683 718 220789 35 chain 25739 chr5 180915260 + 157321758 157322073 AluSp 311 + 1 310 101120 131 13 7 171 chain 12854 chr5 180915260 + 157331452 157331618 L1PA8 5853 + 5689 5853 148821 51 2 1 19 2 1 92 chain 19180 chr5 180915260 + 157343502 157344520 MSTD 398 + 5 398 129584 63 30 29 51 387 73 99 320 10 68 chain 5379 chr5 180915260 + 157344546 157344608 MER31B 477 + 202 264 191208 62 chain 38109 chr5 180915260 + 157346388 157346850 LTR2 463 - 0 463 71969 88 14 15 360 chain 23810 chr5 180915260 + 157349420 157349721 AluSq10 312 + 0 300 111418 172 12 11 117 chain 48506 chr5 180915260 + 157352379 157353309 MER41B 635 - 7 635 60102 110 313 10 379 0 1 128 chain 20933 chr5 180915260 + 157356525 157356821 AluYa5 310 + 10 303 124171 54 57 54 185 chain 35108 chr5 180915260 + 157372261 157372712 LTR7 482 + 0 482 76037 115 0 51 14 51 0 50 0 31 221 chain 8121 chr5 180915260 + 157386223 157386427 MLT1D 503 + 297 503 170375 30 0 1 27 89 90 58 chain 63920 chr5 180915260 + 157393998 157394783 LTR17 781 + 0 781 51044 31 0 4 271 11 0 21 0 1 60 14 15 370 0 1 7 chain 25049 chr5 180915260 + 157395738 157396119 LTR7 482 + 0 476 104549 22 1 2 77 15 14 14 1 52 30 8 50 46 0 1 57 1 2 109 chain 12116 chr5 180915260 + 157403790 157403950 U2 167 - 3 157 151754 19 8 4 11 2 0 120 chain 5395 chr5 180915260 + 157419845 157419906 MLT1A1 405 - 28 89 191039 61 chain 35504 chr5 180915260 + 157431253 157431634 L1PA2 6032 + 5650 6031 75544 381 chain 23614 chr5 180915260 + 157458652 157458971 L1PA8 5853 - 7 321 112503 85 2 1 16 1 0 134 2 0 48 1 0 30 chain 128140 chr5 180915260 + 157463380 157465057 SVA_B 1603 - 5 1600 28537 15 0 1 615 98 0 21 48 1 60 1 0 8 0 80 313 0 2 408 18 5 18 26 12 12 0 8 16 chain 9810 chr5 180915260 + 157465135 157465262 LTR10D 510 - 7 132 161547 84 2 0 41 chain 7861 chr5 180915260 + 157471331 157471511 L1PB1 5432 + 5207 5370 171928 13 2 1 16 1 0 43 1 0 16 1 0 6 16 6 11 14 13 14 2 0 24 chain 25559 chr5 180915260 + 157471522 157471871 THE1C 375 + 0 347 101938 118 0 1 55 27 24 149 chain 12084 chr5 180915260 + 157492963 157493232 LTR23 429 - 15 275 151861 54 18 17 59 88 80 50 chain 13489 chr5 180915260 + 157541356 157541536 THE1D 372 + 191 372 146393 19 13 14 148 chain 17779 chr5 180915260 + 157556252 157556906 THE1D 372 - 2 372 133483 30 1 0 98 383 89 73 18 28 25 0 1 26 chain 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260 0 1 6 0 1 202 5 4 361 0 1 586 10 7 314 0 1 446 1 0 981 16 7 554 0 4 338 0 1 4 1 0 119 2 16 130 chain 4450 chr5 180915260 + 160391212 160391261 L1PA3long 6157 - 105 154 201349 49 chain 9683 chr5 180915260 + 160391261 160391366 L1PA3long 6157 + 6052 6157 162183 105 chain 43303 chr5 180915260 + 160406959 160407504 MER41A 554 + 0 554 65044 373 0 6 114 4 7 54 chain 42770 chr5 180915260 + 160410683 160411224 MER41A 554 + 0 547 65689 288 0 1 180 10 15 63 chain 22818 chr5 180915260 + 160413024 160413314 L1PA8A 6298 - 8 299 116500 102 1 0 41 0 2 146 chain 29960 chr5 180915260 + 160417229 160417609 MLT2A1 477 + 2 382 84939 167 4 1 9 0 1 24 0 1 28 0 1 148 chain 442577 chr5 180915260 + 160417666 160425891 HERVL-int 5654 + 0 5654 8975 181 0 1 157 0 1 85 0 5 219 24 7 24 4 1 5 0 3 181 0 5 353 0 21 168 0 1 134 3 0 5 7 10 92 15 17 66 11 12 87 0 3 40 15 28 44 0 6 29 1 0 125 0 1 14 0 1 341 10 11 164 0 2 800 0 3 1132 0 1 98 32 2 171 270 0 118 0 1 240 1 0 6 5 7 134 0 1 115 2325 0 100 0 1 74 chain 24626 chr5 180915260 + 160422505 160422768 AluYa5 310 - 3 267 106855 258 0 1 5 chain 98968 chr5 180915260 + 160423406 160424643 L1PA7 6471 - 2 1241 37032 153 0 1 193 0 1 500 2 0 96 15 18 10 1 0 267 chain 23765 chr5 180915260 + 160424653 160424934 L1PA7 6471 + 4957 5238 111680 281 chain 27812 chr5 180915260 + 160425891 160426270 MLT2A1 477 + 0 407 93656 169 4 1 9 0 1 24 0 1 91 12 40 47 0 2 18 1 0 4 chain 29099 chr5 180915260 + 160431325 160431636 AluYa5 310 - 0 310 88558 184 1 0 126 chain 22244 chr5 180915260 + 160442325 160442585 AluY 311 + 0 287 119145 51 0 30 48 3 0 158 chain 11839 chr5 180915260 + 160446029 160446220 MER44A 345 + 119 313 152874 57 25 29 48 1 0 60 chain 29068 chr5 180915260 + 160446223 160446868 MLT2A1 477 + 0 477 88685 42 6 8 12 1 0 76 0 1 29 10 18 5 3 0 193 221 47 27 1 0 19 chain 234367 chr5 180915260 + 160464212 160467063 L1PA7 6471 + 3612 6463 17076 559 0 2 64 0 1 483 0 2 13 5 6 379 0 1 458 12 1 41 0 2 232 0 3 439 1 0 165 chain 22084 chr5 180915260 + 160467254 160467526 L1PA7 6471 + 6190 6461 119871 112 1 0 159 chain 29544 chr5 180915260 + 160472209 160472631 L1PA8 5853 - 6 432 86438 13 0 36 13 28 0 26 1 0 17 1 0 49 0 1 13 6 5 66 5 4 42 1 0 141 chain 4434 chr5 180915260 + 160482124 160482250 ERVL-int 1947 - 22 135 201542 16 63 50 47 chain 93179 chr5 180915260 + 160495185 160496279 L1PA5 6144 - 0 1095 38605 52 4 0 281 0 1 171 0 1 4 6 5 275 1 0 66 0 1 7 0 4 227 chain 141030 chr5 180915260 + 160498364 160499993 L1HS 6032 + 8 1641 25981 141 8 7 96 5 4 174 2 5 604 0 3 599 chain 377331 chr5 180915260 + 160500000 160504367 L1PA6 6164 + 1782 6150 10837 550 1 2 812 0 1 51 0 1 187 1 0 550 0 1 1200 3 0 623 0 1 389 chain 6219 chr5 180915260 + 160507953 160508083 MER1B 344 + 216 339 183408 12 0 3 32 40 30 46 chain 28531 chr5 180915260 + 160516236 160516676 L1PA16 3655 + 3151 3587 91048 46 6 10 79 6 4 37 0 2 86 22 16 69 5 6 73 3 0 8 chain 6161 chr5 180915260 + 160560640 160560757 MLT2B4 540 - 422 540 183880 40 31 32 46 chain 14054 chr5 180915260 + 160569070 160569374 L1PA13 3608 + 413 708 144367 15 1 0 17 0 3 3 5 0 8 25 25 12 1 0 4 2 1 15 2 0 17 1 0 13 0 1 56 8 8 20 2 0 25 16 16 36 chain 26707 chr5 180915260 + 160570130 160570522 THE1A-int 1579 + 1138 1562 97300 142 30 38 24 12 36 184 chain 2931 chr5 180915260 + 160592800 160592894 LTR12C 1709 - 672 1035 212260 24 1 42 17 51 279 1 chain 16052 chr5 180915260 + 160592894 160593078 LTR12C 1709 - 597 781 138211 184 chain 13303 chr5 180915260 + 160636731 160636888 L1PA3long 6157 + 5998 6155 147072 157 chain 29140 chr5 180915260 + 160643128 160643437 AluYa5 310 + 0 308 88360 132 1 0 176 chain 7407 chr5 180915260 + 160667270 160667370 LTR7B 505 + 0 139 174730 68 3 42 29 chain 287299 chr5 180915260 + 160667394 160671014 HERVH-int 3825 + 10 3824 14203 322 1 0 203 1 0 10 3 73 11 25 22 5 1 0 5 0 1 15 42 0 21 44 0 58 0 1 21 2 1 193 0 1 595 0 2 584 1 0 129 0 1 575 1 0 227 0 3 31 8 218 486 chain 22568 chr5 180915260 + 160675415 160675819 LTR7 482 + 2 475 117725 67 8 46 67 53 0 10 0 57 5 2 0 11 1 32 16 1 0 41 5 4 117 chain 305708 chr5 180915260 + 160675828 160679746 HERVH-int 3825 + 0 3825 13181 333 1 0 137 15 16 4 1 0 45 1 0 10 0 71 15 3 0 14 12 11 33 9 8 23 143 0 9 2 1 49 0 1 372 21 0 489 0 1 794 0 1 834 2 0 30 0 1 106 26 27 126 1 0 4 1 2 160 6 11 87 chain 29154 chr5 180915260 + 160681613 160682020 LTR7 482 + 0 476 88288 68 9 47 109 3 4 36 0 31 159 2 1 21 chain 17795 chr5 180915260 + 160695406 160695739 L1MA5A 2387 - 88 377 133428 4 1 0 59 28 0 19 3 0 36 22 14 10 2 0 49 1 0 18 0 3 24 1 0 30 3 0 23 chain 23780 chr5 180915260 + 160708073 160708413 THE1B 368 - 0 361 111595 49 4 13 114 2 0 23 1 0 102 8 23 37 chain 86215 chr5 180915260 + 160724294 160725334 L1PA7 6471 - 7 1049 41071 10 3 0 753 1 3 79 1 4 193 chain 3458 chr5 180915260 + 160727660 160727779 MER5A 189 - 36 157 216019 20 60 64 31 2 0 6 chain 29688 chr5 180915260 + 160732008 160732322 AluYb8 318 - 4 318 85872 314 chain 14718 chr5 180915260 + 160735378 160735727 L1PA13 3608 + 3237 3548 142205 36 2 0 21 1 0 43 1 0 29 1 9 13 17 0 8 2 0 49 2 0 3 2 0 8 11 10 22 52 37 10 1 0 6 2 0 7 chain 51346 chr5 180915260 + 160771544 160772216 L1PA7 6471 + 5802 6466 58068 170 1 2 101 1 0 63 0 1 158 1 2 5 1 0 11 0 1 143 10 0 7 chain 51320 chr5 180915260 + 160788850 160789464 L1PA7 6471 - 1067 1680 58087 421 1 0 28 1 0 142 0 1 21 chain 92103 chr5 180915260 + 160789464 160790541 L1PA7 6471 + 5388 6466 38937 226 2 4 83 3 2 763 chain 42671 chr5 180915260 + 160925591 160926223 LTR14B 630 + 8 630 65814 83 1 2 4 1 0 76 0 1 120 0 25 72 0 9 11 52 14 16 8 0 51 0 1 137 chain 166619 chr5 180915260 + 160977284 160979279 L1PA7 6471 - 14 2011 22445 836 8 7 659 2 0 23 0 1 256 1 5 210 chain 65225 chr5 180915260 + 160980146 160980877 L1PA4 6152 - 1 731 50460 259 1 0 471 chain 18777 chr5 180915260 + 161015113 161015546 L1PA17 2846 - 153 565 130752 40 80 77 43 1 0 8 31 23 15 8 4 85 0 1 5 7 0 31 17 18 62 chain 81878 chr5 180915260 + 161015626 161016550 L1PA4 6152 - 5 929 42814 108 0 1 744 1 0 71 chain 3031 chr5 180915260 + 161016550 161016582 L1PA4 6152 + 5232 5264 220570 32 chain 277068 chr5 180915260 + 161021575 161024702 L1PA5 6144 + 3006 6144 14810 120 0 1 1984 0 7 728 0 1 283 1 3 11 chain 551382 chr5 180915260 + 161033056 161039090 L1PA2 6032 - 0 6032 1267 1125 1 0 4651 1 0 256 chain 19861 chr5 180915260 + 161050668 161050924 L1PA7 6471 + 6207 6465 127617 99 11 13 146 chain 24518 chr5 180915260 + 161067125 161067445 THE1C-int 1605 + 1272 1592 107456 21 1 2 4 1 0 37 1 0 155 0 1 100 chain 75324 chr5 180915260 + 161078656 161079695 MER11C 1089 - 26 1089 45863 147 1 0 50 0 1 127 0 1 38 1 0 4 1 5 107 53 51 93 8 18 35 1 0 69 0 4 58 0 9 246 chain 73725 chr5 180915260 + 161081295 161082229 L1PA10 4194 + 3219 4149 46659 321 1 0 565 0 2 5 2 0 5 3 0 32 chain 40193 chr5 180915260 + 161094931 161095364 L1PA3long 6157 + 5724 6157 69038 433 chain 68158 chr5 180915260 + 161137818 161138564 L1PA3long 6157 - 1243 1989 49107 746 chain 114337 chr5 180915260 + 161138564 161139804 L1PA3long 6157 + 4911 6152 32984 1060 0 1 180 chain 8026 chr5 180915260 + 161157425 161157562 MER39B 650 + 514 650 170898 20 10 11 53 1 0 32 5 4 16 chain 36016 chr5 180915260 + 161169836 161170491 L1M1 2793 - 1498 2117 74875 22 1 0 22 4 0 69 1 0 52 1 0 126 2 1 101 2 1 5 0 4 5 6 0 48 1 0 9 1 2 5 3 0 10 53 48 20 2 0 5 2 0 11 40 27 26 chain 31884 chr5 180915260 + 161174836 161175208 L1PA8A 6298 - 7 378 81040 283 1 0 88 chain 42120 chr5 180915260 + 161194613 161195092 L1PA4 6152 - 9 488 66482 479 chain 165239 chr5 180915260 + 161195092 161211743 L1PA4 6152 + 3978 6143 22620 925 0 1 535 0 2 178 14490 0 198 0 1 325 chain 14608 chr5 180915260 + 161199044 161199212 L1PA5 6144 + 5971 6139 142555 168 chain 5616 chr5 180915260 + 161254456 161254549 L1PB1 5432 + 5334 5422 188917 12 3 1 23 1 0 22 1 0 12 1 0 18 chain 29132 chr5 180915260 + 161257532 161257838 AluYb8 318 - 3 309 88398 306 chain 203880 chr5 180915260 + 161329859 161332291 L1PA6 6164 - 808 3245 18934 302 4 6 19 4 5 565 0 1 81 10 14 410 0 1 773 4 0 260 chain 62264 chr5 180915260 + 161332291 161333060 L1PA6 6164 + 5377 6156 51634 293 1 8 332 0 1 48 0 2 95 chain 13402 chr5 180915260 + 161333066 161333249 HSMAR2 1300 - 969 1184 146703 5 0 1 20 3 0 125 0 34 30 chain 27179 chr5 180915260 + 161356970 161357357 MLT2A1 477 + 0 395 95667 141 1 2 17 10 14 29 1 0 4 2 0 149 1 9 25 2 0 5 chain 93838 chr5 180915260 + 161404942 161405992 L1PA4 6152 + 5103 6151 38403 281 2 0 767 chain 68056 chr5 180915260 + 161408553 161409345 L1PA7 6471 - 12 806 49222 759 0 2 33 chain 27492 chr5 180915260 + 161418331 161418640 AluYk4 311 - 5 311 94675 180 3 0 126 chain 21844 chr5 180915260 + 161436975 161437234 AluSg7 307 - 23 284 120838 44 0 1 107 0 1 108 chain 57278 chr5 180915260 + 161437265 161438077 L1PB2 3958 - 1875 3455 54348 142 6 809 16 1 2 101 3 5 435 38 0 70 chain 65346 chr5 180915260 + 161456552 161457374 HERVL-int 5654 + 4846 5654 50401 134 0 1 237 18 0 65 0 3 368 chain 546765 chr5 180915260 + 161457931 161463958 L1PA2 6032 - 0 6032 1857 2470 0 1 15 0 1 1004 0 1 1619 0 2 577 1 2 83 1 0 257 chain 50535 chr5 180915260 + 161481939 161482525 L1PA5 6144 - 0 586 58624 147 0 1 102 4 3 333 chain 14557 chr5 180915260 + 161535871 161536035 L1PA5 6144 - 365 529 142715 164 chain 32127 chr5 180915260 + 161536035 161536395 L1PA5 6144 + 5771 6131 80645 360 chain 38997 chr5 180915260 + 161569474 161569907 L1PA4 6152 + 5710 6143 70749 433 chain 65766 chr5 180915260 + 161593442 161594294 L1PA11 4918 + 1184 2037 50208 136 1 2 414 0 2 75 4 1 29 0 1 193 chain 4985 chr5 180915260 + 161601271 161601324 L1PA6 6164 + 6106 6159 195301 53 chain 21000 chr5 180915260 + 161608411 161608658 L1PA5 6144 + 5898 6141 123918 232 4 0 11 chain 389687 chr5 180915260 + 161611496 161616962 L1PB1 5432 - 5 5401 10461 7 2 0 16 1 0 12 1 0 22 1 0 24 2 0 14 1 0 4 3 1 29 15 2 14 8 7 37 24 22 34 42 35 8 1 0 25 1 0 7 37 4 34 8 8 335 3 0 5 5 7 88 3 0 190 0 1 12 7 19 40 9 10 321 46 9 129 0 7 151 0 4 74 13 16 162 1 0 5 0 9 102 2 1 77 0 1 120 7 9 315 2 0 261 0 10 30 0 1 39 1 0 125 6 10 286 8 9 140 13 14 139 1 3 71 3 0 297 18 0 170 6 8 179 0 2 66 0 1 182 5 6 309 0 1 4 1 0 448 chain 14563 chr5 180915260 + 161660683 161660857 THE1B-int 1605 + 1426 1600 142700 174 chain 18878 chr5 180915260 + 161679450 161679698 L1PA8 5853 + 5608 5853 130431 70 2 1 61 2 1 21 1 0 91 chain 3507 chr5 180915260 + 161696134 161696172 LTR12_ 688 + 456 494 215252 38 chain 30410 chr5 180915260 + 161702440 161702845 LTR7 482 - 7 482 83661 167 0 1 22 1 0 20 9 41 109 8 46 69 chain 297651 chr5 180915260 + 161704103 161707754 HERVH-int 3825 - 0 3825 13542 225 0 2 260 8 218 39 9 11 237 0 4 522 0 1 281 0 10 105 0 13 181 4 31 459 15 0 445 0 3 13 0 2 7 0 1 54 1 0 29 59 15 19 33 7 13 1 0 14 22 12 12 1 0 10 1 0 24 0 1 6 1 0 7 1 0 199 1 0 333 chain 30875 chr5 180915260 + 161707756 161708166 LTR7 482 - 0 482 82724 176 0 1 40 9 41 81 0 1 27 9 47 68 chain 209120 chr5 180915260 + 161717410 161719724 L1PA3long 6157 - 8 2332 18557 100 1 2 305 0 4 349 0 1 850 0 4 709 chain 225712 chr5 180915260 + 161731176 161734335 L1PA6 6164 + 3000 6157 17545 184 2 1 6 6 0 49 55 59 104 2 1 126 1 0 335 0 18 27 1 0 148 0 1 170 8 9 130 0 4 197 4 5 277 11 12 29 0 1 163 0 3 263 0 1 10 3 4 41 0 1 101 7 9 216 13 0 13 80 2 57 11 11 63 6 65 232 0 1 8 chain 3986 chr5 180915260 + 161743067 161743113 L1MCa 1829 - 493 539 207597 46 chain 212667 chr5 180915260 + 161755038 161758069 L1PA10 4194 + 254 4161 18312 18 2 0 14 46 20 29 3 1 20 1 0 7 1 0 11 1 0 6 5 0 15 7 0 8 2 1 80 1 0 4 3 2 189 1 4 340 5 6 45 11 13 73 1 0 23 4 5 99 5 0 6 14 19 163 0 11 280 11 22 281 2 1 154 17 20 351 0 3 31 0 1 4 0 2 107 4 5 258 0 1 26 0 892 21 2 0 159 15 12 33 1 0 11 chain 151434 chr5 180915260 + 161772999 161774902 L1PA7 6471 - 2 1926 24403 8 6 0 658 0 4 290 1 5 230 8 10 23 0 1 338 1 9 47 8 13 225 0 2 12 0 1 48 chain 10114 chr5 180915260 + 161792081 161792217 L1PA16 3655 + 2059 2254 160024 53 1 60 82 chain 8084 chr5 180915260 + 161797015 161797111 THE1C 375 - 15 110 170580 10 1 0 85 chain 89249 chr5 180915260 + 161797111 161798130 LTR5A 1029 + 0 1029 39911 116 0 3 28 1 0 132 0 1 371 0 3 192 0 4 179 chain 3136 chr5 180915260 + 161808593 161808630 MLT2B1 522 - 83 120 222247 37 chain 15900 chr5 180915260 + 161850721 161850896 L1PA4 6152 - 18 193 138657 175 chain 102681 chr5 180915260 + 161863574 161864712 L1PA3long 6157 - 0 1139 36079 766 0 1 372 chain 11127 chr5 180915260 + 161873362 161873486 L1PA5 6144 + 6008 6132 155706 124 chain 334041 chr5 180915260 + 161888909 161892670 L1PA4 6152 - 4 3757 12053 1454 0 1 657 6 1 1015 10 1 311 0 5 308 chain 46923 chr5 180915260 + 161899482 161900115 LTR12 884 + 0 854 61288 25 1 0 228 0 91 32 2 0 188 1 0 113 13 147 30 chain 92089 chr5 180915260 + 161903878 161904922 L1PA4 6152 - 9 1045 38941 150 7 0 519 1 0 367 chain 6715 chr5 180915260 + 161904922 161904999 U6 107 + 30 107 179569 77 chain 75532 chr5 180915260 + 161904999 161905880 L1P1 4361 + 3460 4341 45754 48 2 5 637 1 0 155 1 0 23 2 1 12 chain 174710 chr5 180915260 + 161926850 161928769 L1PA3long 6157 - 0 1916 21512 5 2 0 333 0 1 755 2 0 822 chain 26381 chr5 180915260 + 161937499 161937804 AluYk4 311 + 0 302 98491 276 3 0 26 chain 80650 chr5 180915260 + 161957748 161958683 L1HS 6032 - 5095 6029 43322 262 4 3 416 1 0 183 0 1 69 chain 6918 chr5 180915260 + 161969240 161969319 L1PA7 6471 - 486 565 178049 79 chain 37390 chr5 180915260 + 161969329 161969778 L1PA7 6471 + 6021 6467 72969 115 0 1 45 6 0 137 1 5 135 2 0 8 chain 40794 chr5 180915260 + 161975402 161975908 LTR12F 595 + 0 595 68183 102 1 2 40 2 0 5 0 90 356 chain 74326 chr5 180915260 + 161979997 161980842 L1PA3long 6157 - 0 841 46349 190 7 3 648 chain 47742 chr5 180915260 + 161981583 161982139 L1P1 4361 - 20 573 60664 12 2 1 23 1 0 155 1 0 362 chain 552473 chr5 180915260 + 162005044 162011189 L1PA3long 6157 + 4 6152 1135 839 3 1 133 1 0 1640 0 1 942 0 1 1749 0 4 838 chain 25989 chr5 180915260 + 162046505 162046942 L1PA15 4387 - 35 455 100059 18 1 0 4 5 0 14 2 0 46 6 3 26 42 38 18 1 0 55 1 0 198 chain 30830 chr5 180915260 + 162049318 162049742 LTR12C 1709 + 769 1198 82808 68 1 0 234 0 47 60 41 0 20 chain 2924 chr5 180915260 + 162049681 162049714 LTR12C 1709 + 1053 1086 226628 33 chain 3721 chr5 180915260 + 162049753 162049853 LTR12C 1709 + 802 983 144732 24 54 135 22 chain 442786 chr5 180915260 + 162053047 162058941 L1PA8 5853 + 50 5853 8965 21 2 0 11 1 0 7 58 22 18 12 2 171 12 0 339 7 8 293 1 2 242 0 2 149 0 1 173 6 8 5 2 0 127 6 5 14 0 10 341 1 2 192 0 8 266 1 5 333 2 1 87 0 1 18 3 7 55 0 1 223 0 1 164 11 6 355 72 10 144 10 14 302 0 1 123 2 0 103 0 7 275 0 1 160 3 1 28 0 1 166 0 2 201 0 1 71 0 1 29 12 8 169 1 0 44 2 0 67 30 29 36 2 1 19 1 0 93 chain 3684 chr5 180915260 + 162056790 162056829 L1PA8 5853 - 2103 2142 212168 39 chain 28026 chr5 180915260 + 162067758 162068212 L1MA1 4479 - 324 763 92904 4 1 0 9 1 0 35 2 0 29 1 0 126 3 0 5 1 0 94 0 1 5 12 9 12 1 0 68 14 13 6 2 0 23 chain 42034 chr5 180915260 + 162115249 162115737 L1PA7 6471 - 4 492 66576 488 chain 543060 chr5 180915260 + 162117781 162123919 L1PA4 6152 - 0 6151 2329 146 1 7 6 0 3 2310 0 3 1363 0 1 461 1 0 615 0 1 1235 chain 35835 chr5 180915260 + 162134114 162134516 L1PA3long 6157 + 5633 6035 75085 402 chain 11358 chr5 180915260 + 162134517 162134639 L1PA3long 6157 + 6035 6157 154874 122 chain 5483 chr5 180915260 + 162139208 162139275 MER53 195 - 128 195 190190 67 chain 150032 chr5 180915260 + 162139697 162141382 L1PA4 6152 + 4452 6137 24606 647 0 1 792 1 0 245 chain 5593 chr5 180915260 + 162145102 162145197 LTR19A 502 + 366 458 189153 6 1 0 58 11 9 19 chain 126080 chr5 180915260 + 162151315 162152910 L1PA8 5853 - 26 1640 29072 67 1 0 19 2 1 39 21 19 74 2 0 46 1 0 96 3 18 439 2 0 3 1 0 263 16 22 268 0 8 232 chain 20934 chr5 180915260 + 162152910 162153176 L1P3 4156 + 3272 3540 124166 77 4 5 127 1 2 57 chain 27817 chr5 180915260 + 162156001 162156396 MER51B 395 - 0 358 93646 36 0 1 171 1 0 119 38 1 30 chain 10061 chr5 180915260 + 162159817 162160008 LTR8 732 + 23 527 160267 7 0 9 54 3 0 46 0 309 18 29 28 4 1 0 29 chain 408269 chr5 180915260 + 162160040 162164555 L1PA3long 6157 + 1634 6157 9850 692 1 0 1967 0 2 829 0 10 81 1 0 937 2 0 5 chain 200241 chr5 180915260 + 162168334 162171121 L1PA11 4918 - 1575 4336 19189 11 2 1 41 0 1 4 1 0 79 15 0 123 0 1 110 3 2 49 0 3 6 1 0 137 12 0 60 3 0 63 5 1 198 1 2 185 1 5 9 0 5 6 2 0 5 16 6 247 2 0 7 1 3 158 3 0 204 20 24 16 0 1 255 0 1 176 5 8 27 1 5 427 9 8 81 chain 24464 chr5 180915260 + 162177555 162177854 AluY 311 + 11 307 107734 61 0 3 26 2 0 22 1 0 9 0 1 163 4 0 11 chain 2998 chr5 180915260 + 162178421 162178454 L1PA6 6164 - 15 48 225054 33 chain 48790 chr5 180915260 + 162216795 162217337 L1PA3long 6157 - 0 546 59884 167 2 1 366 0 5 7 chain 19330 chr5 180915260 + 162231499 162231714 L1PA4 6152 + 5928 6143 129143 215 chain 85932 chr5 180915260 + 162236399 162237471 MER11B 1079 + 0 1063 41180 264 4 1 507 8 2 289 chain 29159 chr5 180915260 + 162238746 162239052 AluYb8 318 - 5 311 88259 306 chain 6176 chr5 180915260 + 162243549 162243614 L1PA4 6152 - 179 244 183767 65 chain 13756 chr5 180915260 + 162243614 162243783 L1PA4 6152 + 5978 6152 145414 163 0 5 6 chain 33846 chr5 180915260 + 162250156 162250566 L1PA5 6144 - 12 424 77857 319 1 3 90 chain 25313 chr5 180915260 + 162260908 162261262 THE1A 353 - 0 353 103159 224 11 10 6 0 2 17 5 4 42 0 1 32 2 0 15 chain 111584 chr5 180915260 + 162261262 162262785 THE1A-int 1579 - 0 1551 33783 55 5 17 185 0 2 298 1 0 66 3 2 41 1 0 239 0 1 9 42 51 91 1 2 392 6 12 59 9 8 4 0 1 16 chain 459356 chr5 180915260 + 162273003 162278434 L1PA3long 6157 + 724 6147 8429 1021 0 1 1159 22 11 1611 0 1 1516 0 1 102 chain 75488 chr5 180915260 + 162283136 162283976 L1PA3long 6157 - 1199 2051 45679 10 0 10 728 0 2 102 chain 108670 chr5 180915260 + 162283976 162285179 L1PA3long 6157 + 4953 6156 34521 1203 chain 22975 chr5 180915260 + 162307926 162308387 L1PB1 5432 - 8 448 115735 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 2 1 6 0 1 5 1 0 7 8 0 12 6 4 12 2 1 17 0 9 16 7 6 12 1 0 49 20 14 10 1 0 10 1 0 19 2 0 12 1 2 119 chain 7423 chr5 180915260 + 162310175 162310333 LTR12C 1709 + 720 877 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14 7 1 0 20 4 1 14 1 0 57 1 0 4 chain 509726 chr5 180915260 + 162592069 162598206 L1PA6 6164 + 8 6161 6188 186 0 1 41 0 2 92 0 1 187 0 2 47 1 0 239 0 4 543 0 1 149 5 4 130 0 1 88 1 2 595 6 1 34 0 1 38 0 4 408 0 6 103 0 1 1007 0 1 340 1 0 4 1 2 135 8 0 141 0 1 98 0 1 441 0 6 200 0 1 18 2 0 839 2 0 7 chain 29114 chr5 180915260 + 162608952 162609306 L1PA8 5853 + 5501 5848 88483 63 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 1 0 88 chain 28464 chr5 180915260 + 162610480 162610798 L1PA3long 6157 - 656 973 91324 117 1 0 200 chain 58828 chr5 180915260 + 162610798 162611445 L1PA3long 6157 + 5503 6150 53502 647 chain 10223 chr5 180915260 + 162629180 162629390 MER30 238 + 0 231 159499 32 0 22 10 53 59 7 4 0 60 3 0 41 chain 34505 chr5 180915260 + 162637066 162637477 L1PA7 6471 - 4 410 76894 9 2 0 3 3 0 394 chain 493271 chr5 180915260 + 162639195 162645118 L1PA6 6164 + 202 6151 7212 307 2 1 429 0 25 413 1 0 37 6 1 7 0 5 298 1 0 594 6 8 150 0 8 419 0 1 68 4 0 216 0 1 59 5 1 446 2 0 1385 0 1 858 0 1 210 chain 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98 1 2 35 1 0 93 chain 50813 chr5 180915260 + 162707507 162708058 L1PA3long 6157 + 5606 6157 58426 551 chain 9935 chr5 180915260 + 162709990 162710137 MER53 195 - 4 193 160901 46 0 1 6 0 5 25 8 43 33 0 1 29 chain 29393 chr5 180915260 + 162723528 162724311 L1PB3 3668 + 2923 3409 87104 65 2 0 16 4 0 87 308 5 51 55 69 72 8 7 95 1 0 19 chain 39219 chr5 180915260 + 162739130 162739717 MLT2A2 560 + 1 559 70433 141 0 1 40 1 0 13 79 38 168 0 11 76 0 1 69 chain 36943 chr5 180915260 + 162740045 162740520 LTR2B 499 - 0 490 73597 182 1 0 8 0 1 175 3 22 38 3 0 59 1 0 5 chain 56249 chr5 180915260 + 162744064 162744810 Harlequin-int 5206 - 4319 5081 54996 141 0 2 40 3 1 176 2 1 156 0 1 6 5 10 54 0 4 6 0 3 63 4 5 83 0 3 7 chain 28499 chr5 180915260 + 162746484 162746815 AluYb8 318 + 0 309 91186 118 22 0 191 chain 25458 chr5 180915260 + 162747634 162747922 AluYk4 311 + 10 298 102424 288 chain 40772 chr5 180915260 + 162758141 162758634 LTR10D 510 - 1 510 68211 240 0 2 181 1 15 71 chain 15012 chr5 180915260 + 162761189 162761347 AluYb8 318 - 2 160 141285 158 chain 208370 chr5 180915260 + 162761739 162764772 HERVH-int 3825 + 0 3168 18615 209 11 13 97 26 25 66 8 7 28 22 83 16 3 219 4 1 0 11 1 0 25 0 1 84 1 3 280 1 4 54 15 0 66 0 1 135 9 0 171 0 1 4 1 0 81 0 27 17 4 0 317 41 46 807 31 32 41 151 0 40 1 0 153 chain 25685 chr5 180915260 + 162775465 162775762 AluY 311 + 5 302 101354 297 chain 96073 chr5 180915260 + 162782693 162784000 LTR12C 1709 + 0 1709 37801 205 24 36 97 10 53 73 8 9 177 0 278 182 1 0 7 3 1 89 24 0 17 11 4 62 0 1 122 0 102 103 8 7 84 chain 30949 chr5 180915260 + 162791558 162792079 LTR27 711 + 0 518 82601 110 6 0 65 1 0 14 0 1 151 54 42 19 0 5 16 37 47 48 chain 45824 chr5 180915260 + 162799998 162800627 PABL_A 660 - 9 660 62205 285 30 7 72 0 44 57 0 3 153 10 8 22 chain 15928 chr5 180915260 + 162802683 162803038 THE1B 368 + 2 347 138584 68 14 0 38 44 45 24 23 16 7 1 0 10 0 4 10 8 16 66 17 16 25 chain 95456 chr5 180915260 + 162807419 162808513 L1PA4 6152 + 5062 6152 37969 809 14 5 265 0 5 6 chain 30777 chr5 180915260 + 162815411 162815775 THE1C-int 1605 - 12 372 82910 351 4 0 9 chain 57873 chr5 180915260 + 162817944 162818658 L1PA7 6471 - 4 718 54049 9 1 0 117 13 14 574 chain 14356 chr5 180915260 + 162818659 162818814 L1PA7 6471 + 5175 5330 143354 155 chain 33132 chr5 180915260 + 162818816 162819221 L1PA7 6471 + 5333 5746 79013 290 2 0 38 0 7 16 0 3 59 chain 114783 chr5 180915260 + 162820833 162822580 L1PB1 5432 + 3727 5422 32851 235 0 1 588 19 20 57 14 11 41 0 3 30 0 1 83 8 9 231 9 10 34 1 2 15 44 16 24 8 6 12 2 0 3 2 0 7 9 7 63 1 0 44 1 0 16 2 0 9 2 1 6 9 0 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 86155 chr5 180915260 + 162845514 162846592 MER11B 1079 + 0 1074 41093 250 0 1 12 3 0 47 0 4 358 1 0 100 8 2 279 5 6 15 chain 168684 chr5 180915260 + 162852979 162855305 L1PB1 5432 + 3157 5424 22200 125 0 2 78 17 9 227 1 0 132 2 3 379 0 1 41 0 4 6 0 4 197 0 1 262 0 1 78 6 0 307 0 2 87 3 2 10 9 0 23 1 0 9 16 11 11 10 8 40 22 20 31 2 0 13 9 0 15 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163270110 L1PA3long 6157 + 5051 6149 37508 88 0 7 160 0 8 835 chain 128305 chr5 180915260 + 163278995 163280650 L1P3 4156 - 17 1656 28493 24 2 1 7 2 0 32 0 14 133 0 1 116 9 13 58 35 8 156 1 2 27 1 5 48 1 0 754 1 0 40 8 0 66 1 0 4 0 1 129 chain 113191 chr5 180915260 + 163280725 163282096 L1PA7 6471 + 5070 6464 33320 22 1 0 257 1 0 27 9 28 15 0 2 199 3 2 466 0 6 222 1 0 148 chain 138736 chr5 180915260 + 163299507 163301119 L1PA6 6164 + 4548 6162 26360 159 1 0 4 1 2 243 0 1 355 0 4 310 0 1 529 4 0 6 chain 31161 chr5 180915260 + 163330380 163330723 L1PA4 6152 + 5683 6026 82236 343 chain 388070 chr5 180915260 + 163360220 163365350 L1PA8 5853 + 108 5847 10516 49 23 20 52 1 0 5 0 1 32 8 12 23 18 6 114 0 1 17 8 7 197 27 23 68 29 0 29 5 18 237 5 7 220 0 1 226 7 5 38 0 2 387 0 2 61 0 1 51 22 0 66 2 0 466 0 1 386 12 18 34 0 1 563 4 8 773 1 0 30 0 653 545 1 0 44 2 0 69 10 9 54 2 1 19 2 1 86 chain 8724 chr5 180915260 + 163367374 163367526 L1MA3 4352 + 4172 4311 167067 63 4 0 23 2 0 24 14 7 22 chain 12200 chr5 180915260 + 163383717 163383872 MLT1B 390 + 220 376 151426 98 0 1 57 chain 110241 chr5 180915260 + 163388065 163389430 L1PA7 6471 - 2 1369 34144 8 5 0 145 0 1 163 0 1 26 28 31 473 1 0 115 7 10 394 chain 3707 chr5 180915260 + 163392383 163392425 L1PA2 6032 - 7 49 211841 42 chain 64038 chr5 180915260 + 163397651 163398394 L1PA4 6152 - 9 752 50955 138 14 14 591 chain 80987 chr5 180915260 + 163398394 163399312 L1PA4 6152 + 4465 5398 43198 337 0 10 299 0 1 192 0 4 90 chain 60817 chr5 180915260 + 163406416 163407097 L1PA4 6152 - 1 682 52422 681 chain 72933 chr5 180915260 + 163411884 163412704 L1PA5 6144 - 6 826 47052 820 chain 29035 chr5 180915260 + 163423667 163423983 AluYa5 310 + 0 310 88828 111 6 0 199 chain 29824 chr5 180915260 + 163424244 163424603 L1PA7 6471 - 13 371 85364 137 1 0 221 chain 4092 chr5 180915260 + 163437092 163437225 MER58B 340 - 0 127 206057 40 70 64 23 chain 14889 chr5 180915260 + 163447489 163447657 L1PA3long 6157 - 0 168 141664 168 chain 185793 chr5 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168 chain 9889 chr5 180915260 + 163846054 163846195 MER51B 395 - 8 160 161131 78 3 15 50 1 0 9 chain 71623 chr5 180915260 + 163854327 163855144 L1PA5 6144 - 7 831 47644 252 1 0 337 0 1 204 2 9 21 chain 4751 chr5 180915260 + 163855146 163855199 L1PA5 6144 + 5235 5288 197902 53 chain 28413 chr5 180915260 + 163864380 163864678 AluYd8 298 - 0 298 91525 298 chain 44828 chr5 180915260 + 163879280 163880206 HSMAR1 1287 - 662 1285 63260 53 3 0 5 15 18 203 0 2 133 315 4 78 0 5 32 0 1 89 chain 315841 chr5 180915260 + 163917341 163963798 L1PA4 6152 - 18 4394 12773 130 1 0 5 3 0 5 10 15 685 1 0 70 1 11 156 3 0 625 0 1 1382 42090 0 1168 0 1 122 chain 57438 chr5 180915260 + 163937465 163938142 L1PA7 6471 + 5783 6461 54272 284 0 1 393 chain 25723 chr5 180915260 + 163953788 163954073 L1PA4 6152 + 5862 6152 101202 279 0 5 6 chain 22895 chr5 180915260 + 163962120 163962379 L1PA4 6152 - 2716 2975 116129 259 chain 240313 chr5 180915260 + 163963799 163966522 L1PA4 6152 + 3434 6151 16753 1201 1 0 25 1 0 545 4 0 188 0 3 358 4 1 396 chain 70960 chr5 180915260 + 163971080 163971931 MER11D 897 + 0 890 47944 478 0 12 12 1 3 28 1 2 41 1 24 246 0 1 43 chain 203611 chr5 180915260 + 163974346 163976922 L1PA8A 6298 - 292 2941 18955 160 0 77 7 6 5 138 1 0 129 2 1 90 4 0 676 0 1 100 0 1 730 7 9 4 1 0 521 chain 27799 chr5 180915260 + 164006632 164006933 AluYf4 310 - 8 310 93701 95 0 1 206 chain 22057 chr5 180915260 + 164026702 164026987 AluSp 311 - 18 302 119984 219 7 6 59 chain 62263 chr5 180915260 + 164033390 164034835 L1PB1 5432 - 331 1235 51772 49 1 0 5 12 13 27 0 1 298 6 2 30 257 28 18 0 1 4 1 0 4 11 12 128 0 5 8 323 8 263 chain 28816 chr5 180915260 + 164034835 164035183 L1PB1 5432 + 3828 4176 89819 128 1 0 54 0 1 165 chain 14397 chr5 180915260 + 164108016 164108209 MER4D1 891 - 694 891 143219 50 1 0 4 1 6 137 chain 3131 chr5 180915260 + 164133448 164133484 L1MA7 2200 - 161 197 222341 36 chain 33086 chr5 180915260 + 164165610 164165974 L1PA3long 6157 - 15 379 79069 364 chain 14916 chr5 180915260 + 164185958 164186279 THE1D 372 + 0 332 141587 51 8 0 21 21 0 8 1 22 35 0 1 27 67 85 82 chain 46424 chr5 180915260 + 164211721 164212637 PABL_A 660 - 0 659 61660 214 3 29 72 0 1 244 7 16 11 308 0 32 3 18 22 chain 82362 chr5 180915260 + 164228518 164229772 THE1C-int 1605 - 301 1589 42601 84 121 122 343 44 71 191 1 0 33 15 22 422 chain 3662 chr5 180915260 + 164254653 164254693 MLT2A1 477 + 437 477 212547 40 chain 237405 chr5 180915260 + 164254693 164257637 HERVL-int 5654 + 0 5654 16916 296 0 5 734 0 1 421 42 19 320 11 12 97 6 2728 120 0 1 597 0 2 140 1 2 159 chain 28928 chr5 180915260 + 164257644 164258138 MLT2A1 477 + 7 477 89339 36 15 9 117 4 1 19 1 0 6 28 1 46 1 2 127 42 54 52 chain 25936 chr5 180915260 + 164346696 164346996 AluYf5 307 - 9 307 100274 34 6 4 260 chain 114471 chr5 180915260 + 164354396 164355669 L1PA3long 6157 - 0 1272 32815 1108 2 1 163 chain 478321 chr5 180915260 + 164355669 164361893 L1PA7 6471 - 212 6455 7788 247 0 2 306 1 4 70 0 6 253 14 15 89 4 5 269 45 25 102 0 3 195 0 4 127 0 2 16 2 1 46 0 2 111 6 9 113 4 0 235 2 0 85 1 2 210 13 33 1039 0 1 563 0 1 114 0 1 69 5 7 138 4 5 246 0 5 342 7 4 170 0 3 200 1 0 12 1 0 342 21 0 147 16 26 221 chain 8528 chr5 180915260 + 164361914 164362167 L1PA13 3608 - 3016 3255 168148 36 23 22 18 2 0 15 96 85 63 chain 28975 chr5 180915260 + 164366307 164366608 AluYa5 310 - 9 310 89112 301 chain 13421 chr5 180915260 + 164392386 164392573 MER30 238 - 0 201 146623 110 14 28 63 chain 33701 chr5 180915260 + 164395347 164395818 MER61D 487 - 0 486 78093 155 2 0 33 16 37 81 15 11 169 chain 18940 chr5 180915260 + 164434698 164435034 THE1D 372 + 0 332 130254 7 0 1 42 9 0 24 3 0 5 14 18 14 3 5 55 27 29 25 1 0 107 chain 18844 chr5 180915260 + 164453349 164453647 L1PA16 3655 + 3291 3584 130533 59 45 43 184 3 0 7 chain 26273 chr5 180915260 + 164466060 164466366 L1PA5 6144 - 0 305 98923 18 1 0 287 chain 515104 chr5 180915260 + 164467396 164473559 L1PA5 6144 - 2 6143 5659 336 0 1 924 71 1 663 1 3 166 1 0 77 0 1 800 7 6 843 10 8 812 0 5 69 1 0 231 24 28 16 0 3 43 5 6 112 0 3 416 0 3 84 4 5 81 0 2 226 7 33 88 0 1 45 chain 6344 chr5 180915260 + 164481551 164481627 L1PA5 6144 + 6062 6139 182433 16 0 1 60 chain 237093 chr5 180915260 + 164496008 164499625 L1PA11 4918 - 414 3723 16927 16 5 4 10 2 0 67 2 0 8 7 6 59 1 0 8 1 0 12 8 10 70 0 4 131 6 0 191 1 2 284 0 5 321 0 3 57 0 1 32 1 0 284 0 2 7 4 0 197 1 0 166 2 0 52 11 13 153 2 0 66 1 5 173 8 7 13 9 3 52 20 22 124 301 0 48 7 4 137 9 10 28 7 10 124 18 13 141 0 1 101 20 21 31 chain 98492 chr5 180915260 + 164508934 164510053 L1PA4 6152 - 9 1114 37162 172 16 2 931 chain 25884 chr5 180915260 + 164523556 164523908 THE1A 353 - 0 353 100510 52 1 0 106 0 3 40 11 10 142 chain 114856 chr5 180915260 + 164523921 164525440 THE1A-int 1579 - 14 1561 32830 501 30 36 21 1 0 89 0 1 15 1 11 214 1 0 5 1 2 166 1 0 74 5 6 83 1 5 60 0 7 88 0 1 162 chain 24116 chr5 180915260 + 164525458 164525801 THE1A 353 - 0 353 109660 38 1 2 142 0 11 10 9 8 32 2 1 109 chain 32934 chr5 180915260 + 164594215 164594593 L1PA5 6144 - 13 391 79316 378 chain 3835 chr5 180915260 + 164598784 164598834 MER46C 351 + 274 324 209850 50 chain 376262 chr5 180915260 + 164605204 164610885 L1PB1 5432 - 331 5372 10873 193 0 1 103 1 0 137 1 0 39 3 0 41 0 1 59 3 12 559 1 0 228 2 0 113 0 1 140 1 0 25 0 1 79 1 0 269 7 9 192 0 3 311 0 1 205 0 1 8 665 0 100 0 3 86 0 1 99 16 17 102 0 1 303 12 7 41 4 9 84 1 33 60 30 11 4 0 1 5 2 0 8 1 0 144 0 4 645 21 20 37 24 12 83 1 0 139 8 11 30 14 13 79 1 2 70 15 20 26 chain 25627 chr5 180915260 + 164607949 164608257 L1PA5 6144 - 0 312 101594 103 0 3 82 0 1 123 chain 20125 chr5 180915260 + 164631086 164631367 AluY 311 + 34 300 126752 19 18 1 78 0 1 74 5 6 87 chain 40100 chr5 180915260 + 164644841 164645304 LTR2 463 - 0 463 69183 463 chain 27342 chr5 180915260 + 164661261 164661616 THE1B 368 + 0 368 95137 44 5 20 110 1 0 119 1 0 75 chain 98957 chr5 180915260 + 164745462 164746935 THE1B-int 1605 - 14 1577 37038 243 18 19 153 1 0 4 4 5 136 1 2 9 13 14 148 14 17 85 58 68 57 0 1 169 0 64 95 1 2 20 40 47 188 1 2 15 chain 28684 chr5 180915260 + 164763507 164763812 AluYa5 310 + 0 304 90392 132 1 0 172 chain 163884 chr5 180915260 + 164810050 164811870 L1PA4 6152 - 6 1837 22822 352 0 11 1468 chain 465053 chr5 180915260 + 164840351 164845679 L1PA4 6152 + 796 6140 8218 440 0 1 1761 0 1 167 3 1 379 5 0 790 7 15 953 10 14 48 2 0 417 0 11 346 chain 117526 chr5 180915260 + 164868479 164870674 THE1B-int 1605 - 0 1589 31953 73 0 1 350 3 4 172 0 1 231 0 1 251 711 105 131 4 0 269 chain 23526 chr5 180915260 + 164869572 164869855 AluSc 308 + 10 293 112980 283 chain 282999 chr5 180915260 + 164891186 164896014 L1PBa1 4058 + 0 3996 14472 10 2 0 20 16 6 11 72 68 160 0 1 173 2 0 114 1 24 33 8 7 31 4 1 251 1 0 751 1 0 36 311 0 105 0 3 108 1 2 207 0 1 114 320 0 214 0 1 11 13 8 153 30 31 93 3 0 5 0 3 127 0 1 200 169 0 86 0 2 47 0 7 209 1 0 108 31 18 76 0 3 26 8 6 25 27 28 17 4 2 106 3 1 24 2 3 5 15 0 12 2 0 19 14 9 21 1 0 9 22 17 12 1 0 14 chain 3086 chr5 180915260 + 164906928 164907002 MADE1 96 - 4 96 223163 20 13 30 15 4 5 22 chain 6222 chr5 180915260 + 164912758 164912830 L1PA5 6144 - 0 72 183390 72 chain 20246 chr5 180915260 + 164912834 164913078 L1PA5 6144 + 5841 6083 126391 45 1 0 184 1 0 13 chain 55260 chr5 180915260 + 164961973 164962778 LTR12D 1347 - 12 944 55546 52 0 4 128 0 4 56 0 97 104 6 5 101 5 6 67 37 53 90 26 32 133 chain 46185 chr5 180915260 + 164976471 164977016 L1PA7 6471 - 10 557 61863 11 0 1 462 0 1 72 chain 24371 chr5 180915260 + 165008447 165009139 THE1A 353 + 1 332 108250 12 2 0 34 0 1 48 2 1 187 359 0 48 chain 23539 chr5 180915260 + 165031590 165031885 AluY 311 + 18 311 112907 105 7 5 183 chain 194090 chr5 180915260 + 165040182 165042524 L1PA6 6164 - 12 6160 19665 333 0 1 506 0 4 265 1 0 1035 50 3852 152 chain 30122 chr5 180915260 + 165055321 165055638 AluYb8 318 - 1 318 84418 317 chain 24623 chr5 180915260 + 165073301 165073581 AluY 311 + 16 298 106863 109 0 2 171 chain 503530 chr5 180915260 + 165114439 165120872 L1PA7 6471 - 2 6466 6634 36 1 0 110 2 1 5 0 2 6 1 2 6 1 0 50 0 1 354 6 8 31 0 1 154 0 2 54 6 2 27 0 3 104 0 3 195 0 5 631 0 2 7 0 3 85 0 1 4 1 0 294 7 6 137 3 19 125 0 2 269 1 2 90 0 3 8 1 0 66 0 4 35 13 12 13 6 5 6 0 2 523 10 12 298 2 1 10 12 0 134 0 1 67 0 3 214 24 22 21 3 2 129 1 0 213 2 0 859 0 3 71 10 8 5 0 1 146 0 1 214 3 0 111 1 2 46 0 1 353 chain 8467 chr5 180915260 + 165121323 165121422 L1PREC2 3366 - 1320 1419 168483 99 chain 9185 chr5 180915260 + 165126360 165126467 L1PA5 6144 + 6036 6143 164632 107 chain 20029 chr5 180915260 + 165151901 165152121 L1PA4 6152 + 5932 6152 127044 220 chain 23586 chr5 180915260 + 165154656 165154984 AluY 311 + 2 301 112650 132 39 10 157 chain 25095 chr5 180915260 + 165237726 165238040 AluY 311 + 0 311 104317 64 3 0 247 chain 20519 chr5 180915260 + 165239724 165239992 AluSc8 310 + 40 309 125573 84 4 7 154 2 0 24 chain 56041 chr5 180915260 + 165305068 165305765 L1PA7 6471 - 1 698 55095 14 1 0 58 0 1 74 8 1 8 0 7 534 chain 32330 chr5 180915260 + 165305774 165306157 L1PA7 6471 + 5350 5737 80300 270 0 4 113 chain 24445 chr5 180915260 + 165310569 165310906 LTR3B_ 500 - 0 335 107830 91 0 2 49 17 14 40 1 0 139 chain 59013 chr5 180915260 + 165346344 165347026 SVA_B 1603 + 885 1603 53385 41 17 13 11 0 1 4 0 39 609 chain 90593 chr5 180915260 + 165356814 165357891 L1PA6 6164 + 5074 6154 39432 244 0 4 274 5 6 171 0 1 125 3 0 255 chain 10024 chr5 180915260 + 165378143 165378317 MER30B 195 + 8 195 160464 28 0 1 37 33 41 39 0 3 7 0 1 30 chain 486588 chr5 180915260 + 165391451 165401119 L1PA7 6471 - 12 6470 7496 7 0 1 123 7 8 42 5 6 140 0 1 5 0 1 185 0 18 211 3262 0 48 0 4 42 0 3 175 0 1 427 0 1 159 1 2 18 2 0 5 0 2 626 21 0 111 2 0 78 1 5 39 3 17 207 1 0 188 0 4 46 0 1 204 0 1 168 0 4 19 8 12 457 1 2 363 1 0 171 0 3 144 0 1 195 0 5 470 1 2 264 5 7 7 2 0 72 29 13 201 39 58 130 25 30 81 15 6 198 0 2 5 22 21 105 0 1 79 chain 274037 chr5 180915260 + 165392224 165395438 L1PA4 6152 - 17 3112 14956 1427 122 0 356 0 4 685 4 6 454 1 0 26 1 0 12 2 1 124 chain 8303 chr5 180915260 + 165393651 165393743 L1PA4 6152 - 1443 1535 169378 92 chain 7005 chr5 180915260 + 165413500 165413576 LTR12C 1709 - 338 414 177436 76 chain 4244 chr5 180915260 + 165417405 165417458 MLT1A 405 + 297 349 203956 40 1 0 12 chain 11689 chr5 180915260 + 165437264 165437925 MER34 540 - 136 517 153523 17 121 156 44 30 32 42 321 4 86 chain 28417 chr5 180915260 + 165469519 165469819 AluYa5 310 - 10 310 91514 300 chain 29205 chr5 180915260 + 165524542 165524848 AluYa5 310 - 4 310 88022 306 chain 25701 chr5 180915260 + 165526517 165526818 L1PA5 6144 - 0 299 101286 5 2 0 294 chain 303905 chr5 180915260 + 165526818 165530546 L1P2 5180 - 1434 5177 13247 57 2 0 518 0 3 118 0 1 498 1 0 1599 6 31 128 1 0 6 1 0 37 0 1 229 31 23 230 21 20 96 2 1 147 chain 25429 chr5 180915260 + 165534351 165534656 AluY 311 + 6 311 102544 305 chain 3695 chr5 180915260 + 165545898 165545940 MADE1 96 + 53 95 212006 42 chain 6088 chr5 180915260 + 165548374 165548612 MLT1F2 592 - 4 245 184516 20 147 150 71 chain 413522 chr5 180915260 + 165568196 165572697 L1HS 6032 - 1512 6013 9710 4501 chain 143070 chr5 180915260 + 165572697 165574240 L1PA2 6032 + 4488 6031 25626 1543 chain 19899 chr5 180915260 + 165576797 165577120 THE1D 372 - 0 325 127487 149 5 4 19 32 34 80 10 12 23 1 0 4 chain 7469 chr5 180915260 + 165589283 165589367 L1PA5 6144 + 6058 6142 174350 84 chain 7594 chr5 180915260 + 165624746 165624834 L1PA7 6471 - 7 95 173587 88 chain 4113 chr5 180915260 + 165641142 165641188 MSTD 398 - 323 369 205730 46 chain 106452 chr5 180915260 + 165646284 165647567 L1PA7 6471 - 10 1305 35136 324 0 1 71 0 8 433 0 3 78 1 0 4 0 1 372 chain 10129 chr5 180915260 + 165665173 165665711 LTR12 884 - 12 777 159948 49 13 150 23 219 388 12 1 0 46 0 41 19 124 6 23 1 0 8 chain 2183 chr5 180915260 + 165665578 165665601 LTR12 884 - 746 769 236725 23 chain 69930 chr5 180915260 + 165681077 165681986 L1PA8 5853 + 4785 5689 48419 225 2 0 34 30 30 13 0 1 78 1 0 354 0 1 43 1 0 44 2 0 70 2 1 10 chain 96201 chr5 180915260 + 165807371 165808487 L1PA5 6144 - 0 1117 37768 830 0 1 286 chain 9345 chr5 180915260 + 165847581 165847681 L1HS 6032 - 870 970 163369 100 chain 82447 chr5 180915260 + 165847681 165848563 L1HS 6032 + 5150 6032 42565 882 chain 11983 chr5 180915260 + 165866680 165866830 THE1D 372 + 216 372 152283 22 0 6 128 chain 517546 chr5 180915260 + 165871555 165877992 L1PA7 6471 - 14 6471 5417 131 6 7 10 3 1 37 0 1 653 0 3 8 0 4 47 0 1 345 0 1 4 1 0 94 1 23 10 23 1 36 2 1 431 0 9 587 19 16 392 18 23 84 6 1 863 0 1 288 2 1 178 0 7 129 0 1 41 1 0 447 0 1 295 4 0 294 0 1 283 7 9 657 chain 21908 chr5 180915260 + 165889478 165889746 AluY 311 + 38 299 120591 88 7 0 173 chain 178115 chr5 180915260 + 165889863 165892826 L1PB1 5432 - 8 2576 21153 4 1 0 16 2 1 12 1 0 11 31 29 5 2 0 14 8 5 30 13 1 16 1 0 43 1 0 16 2 1 51 2 0 8 7 3 12 1 0 29 65 14 85 0 2 140 0 1 94 6 4 103 1 0 9 2 0 16 49 50 302 0 6 63 3 4 23 2 8 41 0 1 33 1 2 16 0 1 134 0 3 6 6 4 231 14 8 137 1 0 52 9 3 242 313 0 205 7 6 121 1 0 91 chain 40997 chr5 180915260 + 165896115 165896562 L1PA2 6032 - 0 447 67910 447 chain 161253 chr5 180915260 + 165973902 165975681 L1PA3long 6157 - 0 1769 23158 5 1 0 657 9 0 1107 chain 4644 chr5 180915260 + 166109817 166110060 MER20 218 + 0 209 199129 18 31 24 39 132 105 23 chain 13886 chr5 180915260 + 166113207 166113459 L1PB1 5432 - 29 260 144965 12 1 0 21 1 0 24 2 0 14 8 5 15 22 12 4 1 0 16 1 0 42 2 1 18 1 0 47 chain 75727 chr5 180915260 + 166119567 166120620 MER11A 1151 - 1 1151 45635 288 3 0 16 2 0 10 6 31 128 13 91 291 1 0 65 1 0 23 62 53 44 21 31 79 chain 4760 chr5 180915260 + 166142980 166143037 MSTB1 431 - 14 71 197807 57 chain 29454 chr5 180915260 + 166150757 166151068 AluYb8 318 - 7 318 86825 311 chain 3116 chr5 180915260 + 166162056 166162090 MLT2F 649 - 3 37 222619 34 chain 28511 chr5 180915260 + 166167069 166167453 LTR7 482 - 12 482 91138 103 1 2 36 0 15 22 0 31 36 0 1 109 9 47 68 chain 261628 chr5 180915260 + 166167889 166171253 HERVH-int 3825 - 280 3825 15610 116 20 21 97 0 24 211 1 4 503 0 1 147 8 7 5 0 1 306 11 16 182 0 1 123 0 1 88 0 5 216 1 0 37 11 1 187 0 10 11 15 0 216 0 1 104 0 1 123 1 0 14 37 203 7 15 0 25 1 0 37 7 4 12 1 5 106 1 2 12 1 0 4 16 16 49 0 2 98 0 2 181 chain 27977 chr5 180915260 + 166171260 166171655 LTR7 482 - 5 482 93082 93 0 2 57 1 11 22 6 37 30 0 1 109 9 47 68 chain 5398 chr5 180915260 + 166176847 166176928 MER53 195 + 112 195 191001 54 1 3 26 chain 107850 chr5 180915260 + 166201339 166202564 L1PA4 6152 - 191 1402 34767 471 9 0 188 0 4 311 9 0 237 chain 96103 chr5 180915260 + 166210544 166212014 LTR12C 1709 - 0 1709 37791 84 5 4 58 101 0 335 44 13 97 12 9 128 0 278 87 7 8 227 0 43 42 17 18 38 0 1 31 0 51 106 9 5 7 5 0 10 0 9 20 chain 23948 chr5 180915260 + 166216178 166216465 AluSc5 308 - 10 297 110635 287 chain 112822 chr5 180915260 + 166236324 166237764 LTR12C 1709 - 0 1709 33433 84 5 4 218 1 0 82 18 19 74 11 4 112 1 0 12 0 160 88 0 118 734 chain 24484 chr5 180915260 + 166248324 166248626 AluSp 311 - 9 305 107634 23 6 0 273 chain 21823 chr5 180915260 + 166275442 166275707 L1PA8A 6298 + 6011 6278 120933 171 0 2 94 chain 25948 chr5 180915260 + 166294141 166294439 AluYa5 310 - 0 296 100223 184 2 0 112 chain 2858 chr5 180915260 + 166330432 166330525 MER20 218 + 61 160 227690 20 31 36 13 8 9 21 chain 99992 chr5 180915260 + 166362363 166363788 LTR12C 1709 - 0 1709 36782 84 5 4 218 1 0 175 11 4 15 24 0 91 3 1 5 1 0 131 0 278 86 13 14 74 36 38 110 0 43 37 18 19 96 0 4 35 6 1 64 4 0 82 chain 567564 chr5 180915260 + 166393786 166399820 L1HS 6032 - 0 6029 55 1866 0 2 3451 7 0 710 chain 23907 chr5 180915260 + 166473706 166474028 L1PA8 5853 - 0 316 110871 93 1 0 19 3 2 51 1 0 9 1 0 71 3 1 7 0 1 35 1 0 27 chain 2472 chr5 180915260 + 166487723 166487779 MER33 330 - 140 196 233465 26 13 10 8 0 3 9 chain 20252 chr5 180915260 + 166493390 166493627 L1PA5 6144 - 3 239 126371 110 1 0 126 chain 19723 chr5 180915260 + 166533968 166534260 AluSq2 311 + 1 277 128032 119 1 0 14 36 22 17 1 0 104 chain 9167 chr5 180915260 + 166611918 166612063 MER1B 344 - 129 286 164719 98 24 36 23 chain 29528 chr5 180915260 + 166637456 166637767 AluYb8 318 - 7 318 86533 311 chain 18084 chr5 180915260 + 166689162 166689377 AluSp 311 + 81 296 132634 215 chain 26604 chr5 180915260 + 166715285 166715592 AluY 311 + 3 311 97638 129 0 1 178 chain 30139 chr5 180915260 + 166724635 166725047 LTR7 482 - 0 482 84353 204 22 54 109 8 46 69 chain 25439 chr5 180915260 + 166725326 166725605 AluYf4 310 + 0 279 102501 279 chain 292841 chr5 180915260 + 166726624 166730273 HERVH-int 3825 - 0 3825 13831 298 0 2 154 41 251 39 9 11 217 0 34 628 2 4 183 0 4 66 2 1 757 0 1 396 1 0 49 2 1 5 0 1 24 2 1 42 29 25 27 68 0 24 1 0 10 1 0 34 4 3 200 1 0 333 chain 30571 chr5 180915260 + 166730275 166730683 LTR7 482 - 0 482 83263 113 0 4 73 0 31 36 0 1 109 9 47 68 chain 24922 chr5 180915260 + 166754035 166754312 L1PA4 6152 - 4 281 105211 277 chain 30202 chr5 180915260 + 166763840 166764158 AluYb9 318 + 0 318 84189 318 chain 30082 chr5 180915260 + 166769513 166769831 AluYb9 318 - 0 318 84556 318 chain 29002 chr5 180915260 + 166780505 166780811 AluYa5 310 - 4 310 88976 306 chain 239272 chr5 180915260 + 166812536 166815881 L1PB1 5432 - 12 3333 16814 16 1 0 13 1 0 45 2 0 14 8 5 19 16 6 6 3 0 16 7 6 37 1 0 16 2 1 42 16 31 13 2 1 19 1 0 9 46 3 269 0 12 193 2 0 240 0 3 79 0 1 130 5 6 42 8 10 154 1 0 4 8 11 74 2 3 137 34 24 261 0 1 554 0 3 54 13 13 130 6 11 98 1 0 4 1 5 52 0 1 30 0 1 216 1 5 106 0 1 65 chain 7562 chr5 180915260 + 166853390 166853480 LTR19B 566 + 476 566 173790 90 chain 121790 chr5 180915260 + 166862592 166864595 THE1B-int 1605 + 2 1600 30446 361 433 0 65 12 39 208 0 1 4 0 2 102 4 0 172 3 4 176 0 2 355 1 0 107 chain 18720 chr5 180915260 + 166879722 166879932 L1PA5 6144 + 5920 6130 130902 210 chain 34930 chr5 180915260 + 166902496 166902988 L1PA8 5853 - 0 484 76295 93 1 0 16 1 0 48 23 18 70 2 0 43 2 1 140 0 1 17 16 17 20 chain 24130 chr5 180915260 + 166959344 166959686 THE1B 368 - 11 367 109588 184 2 1 86 27 42 43 chain 8813 chr5 180915260 + 166961426 166961585 MER53 195 + 9 193 166591 58 35 60 66 chain 24870 chr5 180915260 + 166989699 166989992 AluSq 315 + 20 315 105518 112 1 3 180 chain 41531 chr5 180915260 + 167064446 167064983 L1PA8 5853 + 5314 5853 67243 27 0 1 178 0 1 43 4 9 35 2 0 74 9 8 53 1 0 22 2 1 87 chain 27709 chr5 180915260 + 167162995 167163374 THE1C 375 - 0 375 94008 25 1 0 126 1 0 27 14 12 5 1 0 92 0 1 87 chain 63809 chr5 180915260 + 167184109 167184841 L1PA7 6471 - 12 744 51093 732 chain 131594 chr5 180915260 + 167285878 167288067 SVA_F 1814 + 335 1814 27719 144 0 40 379 759 0 49 0 15 39 2 0 4 1 0 172 2 0 10 1 0 627 chain 6255 chr5 180915260 + 167286401 167286481 SVA_F 1814 + 1011 1091 103452 80 chain 2518 chr5 180915260 + 167286499 167286528 SVA_F 1814 + 868 898 212840 12 0 1 17 chain 34125 chr5 180915260 + 167286530 167286908 SVA_F 1814 + 899 1291 77443 49 3 18 308 1 0 17 chain 14723 chr5 180915260 + 167286941 167287160 SVA_F 1814 + 1100 1265 82417 77 64 10 78 chain 3183 chr5 180915260 + 167287024 167287061 SVA_F 1814 + 1181 1219 221268 33 0 1 4 chain 534432 chr5 180915260 + 167381471 167388163 L1PA7 6471 - 3 6471 3662 6 4 0 146 9 9 174 1 0 338 1 2 172 1 0 614 19 16 186 0 2 199 1 0 30 1 0 745 3 1 305 0 1 620 4 5 259 4 0 377 1 0 499 236 18 393 1 2 5 1 0 58 0 1 4 1 0 55 1 9 92 0 1 40 0 1 187 3 2 273 2 1 8 1 0 95 1 2 73 33 32 410 chain 28724 chr5 180915260 + 167396151 167396524 THE1B 368 + 0 368 90229 81 4 1 90 1 0 136 1 0 60 chain 19298 chr5 180915260 + 167471142 167471387 AluY 311 + 4 250 129247 127 3 0 8 6 10 101 chain 3097 chr5 180915260 + 167482343 167482423 Helitron3Na_Mam 445 - 17 95 222993 23 32 30 25 chain 21883 chr5 180915260 + 167501962 167502402 L1PB1 5432 - 10 417 120701 18 1 0 7 6 5 22 1 0 24 2 0 14 1 0 5 3 1 11 1 0 7 27 15 12 1 0 45 1 0 15 2 1 50 31 24 13 1 0 19 3 0 9 1 2 79 0 1 8 chain 518906 chr5 180915260 + 167504437 167510582 L1PA6 6164 - 2 6164 5275 847 1 0 1238 0 1 886 0 1 975 0 2 892 0 1 300 0 9 57 14 16 404 0 1 22 2 1 312 0 1 18 38 39 139 chain 10757 chr5 180915260 + 167527046 167527174 L1P1 4361 - 33 160 157169 23 1 0 104 chain 61723 chr5 180915260 + 167527174 167527939 L1PA7 6471 + 5746 6470 52025 269 1 0 371 51 11 73 chain 25665 chr5 180915260 + 167529891 167530187 L1PA4 6152 - 0 300 101423 6 0 5 136 1 0 153 chain 3840 chr5 180915260 + 167536556 167536614 MER5A 189 - 46 106 209784 30 4 6 24 chain 5224 chr5 180915260 + 167553509 167553569 MER5A 189 - 122 182 192786 60 chain 187200 chr5 180915260 + 167571184 167573216 L1PA2 6032 - 0 2034 20318 589 0 1 870 0 1 573 chain 6256 chr5 180915260 + 167593697 167593804 MER105 203 + 46 152 183123 60 16 15 31 chain 5457 chr5 180915260 + 167610321 167610394 FordPrefect_a 431 + 338 407 190453 61 4 0 8 chain 20814 chr5 180915260 + 167642451 167642690 AluY 311 + 60 299 124557 239 chain 27492 chr5 180915260 + 167660684 167661040 THE1A 353 - 0 353 94673 72 4 0 170 1 0 41 5 7 63 chain 9494 chr5 180915260 + 167765743 167765919 L1MA5A 2387 + 2144 2299 163107 11 2 0 15 0 2 10 1 0 33 34 15 65 1 0 4 chain 3171 chr5 180915260 + 167822469 167822504 MER6B 211 + 64 99 221540 35 chain 15994 chr5 180915260 + 167839679 167839943 MER2 342 + 21 320 138365 30 50 85 184 chain 27829 chr5 180915260 + 167865235 167865584 THE1C 375 + 33 375 93589 5 3 0 87 3 0 224 1 0 26 chain 6861 chr5 180915260 + 167868156 167868240 L1MB2 1706 + 1463 1547 178488 84 chain 20829 chr5 180915260 + 167897562 167897834 AluSp 311 + 5 289 124508 168 12 23 49 0 1 43 chain 10143 chr5 180915260 + 167908049 167908297 Tigger3b 1229 - 459 745 159883 64 0 125 16 91 5 5 1 0 71 chain 19434 chr5 180915260 + 167909893 167910103 L1PA5 6144 - 4 214 128861 210 chain 32212 chr5 180915260 + 167939485 167939902 MLT2A1 477 - 0 458 80502 43 12 49 4 1 0 208 1 5 29 0 1 119 chain 126000 chr5 180915260 + 167968452 167969829 L1PA3long 6157 - 542 1918 29099 315 1 0 1061 chain 48102 chr5 180915260 + 167969833 167970376 L1PA3long 6157 + 5615 6155 60401 283 1 0 239 2 0 18 chain 24612 chr5 180915260 + 167985158 167985468 AluYf4 310 - 10 310 106929 20 0 1 4 0 2 18 9 0 129 3 0 30 1 0 96 chain 3247 chr5 180915260 + 167988023 167988057 tRNA-Gly-GGA 38 + 4 38 220075 34 chain 26282 chr5 180915260 + 167999359 167999750 LTR7Y 441 - 40 439 98892 73 66 75 5 1 0 246 chain 77862 chr5 180915260 + 168000532 168001381 L1PA3long 6157 - 4 857 44582 91 0 4 758 chain 47597 chr5 180915260 + 168007934 168008568 MER41B 635 + 0 635 60768 14 0 2 76 1 0 33 1 2 319 23 22 167 chain 386953 chr5 180915260 + 168019560 168024013 L1PA5 6144 - 6 4460 10550 786 0 3 308 0 1 418 1 0 530 5 6 410 5 0 473 2 1 821 0 3 694 chain 28162 chr5 180915260 + 168026764 168027168 MER84 505 - 8 434 92422 80 1 0 13 0 1 46 1 27 151 8 11 22 2 0 14 6 0 19 0 1 41 chain 4117 chr5 180915260 + 168044371 168044449 MER84 505 + 0 80 205683 30 18 20 30 chain 4081 chr5 180915260 + 168051939 168051987 MER20 218 + 166 214 206180 48 chain 500462 chr5 180915260 + 168057711 168064038 L1PA5 6144 + 0 6142 6808 113 11 25 78 1 0 30 38 38 86 8 21 18 15 14 51 30 5 469 21 0 80 1 2 4 1 0 27 29 15 89 11 5 433 6 0 245 5 7 221 2 3 234 7 1 381 15 0 4 123 0 429 3 8 156 1 0 59 0 2 5 7 5 1612 0 1 355 14 17 782 5 0 12 chain 8956 chr5 180915260 + 168060495 168060598 L1PA5 6144 + 3523 3626 163608 103 chain 28883 chr5 180915260 + 168068775 168069150 THE1C 375 + 0 375 89526 289 0 2 57 3 1 26 chain 154028 chr5 180915260 + 168069655 168071422 SVA_F 1814 - 0 1814 24087 540 1 0 158 0 78 76 48 14 84 0 40 258 40 0 421 0 4 141 chain 3699 chr5 180915260 + 168070430 168070478 SVA_F 1814 - 676 724 149406 48 chain 4635 chr5 180915260 + 168072803 168072865 FLAM_C 140 + 70 136 199250 48 1 5 13 chain 23776 chr5 180915260 + 168074514 168074874 THE1C 375 - 0 374 111620 133 53 63 49 0 3 39 0 1 86 chain 18779 chr5 180915260 + 168130365 168130652 MER1B 344 + 48 336 130739 33 6 0 6 0 6 123 4 0 37 24 29 54 chain 2865 chr5 180915260 + 168150752 168150782 MER5B 177 + 17 47 227591 30 chain 10866 chr5 180915260 + 168160590 168160762 L1PA8 5853 + 5648 5816 156713 31 22 20 40 3 2 19 1 0 56 chain 8971 chr5 180915260 + 168218502 168218613 HY1 111 + 0 111 165764 111 chain 17438 chr5 180915260 + 168288115 168288310 L1PA5 6144 - 2 197 134410 195 chain 24856 chr5 180915260 + 168291899 168292203 AluSq2 311 + 9 309 105591 124 0 1 79 5 0 96 chain 19036 chr5 180915260 + 168327658 168327928 L1PB4 2604 + 2280 2552 130010 106 2 0 88 22 26 52 chain 28625 chr5 180915260 + 168394442 168394744 AluYa5 310 - 9 310 90633 170 1 0 131 chain 3230 chr5 180915260 + 168403183 168403224 MIR 256 - 134 175 220416 41 chain 4440 chr5 180915260 + 168431994 168432065 Tigger1 2417 + 54 125 201456 30 0 1 21 7 6 13 chain 3691 chr5 180915260 + 168437463 168437506 MER53 195 - 152 195 212060 43 chain 2588 chr5 180915260 + 168483906 168483954 MIRc 230 + 67 116 231828 15 8 9 25 chain 22869 chr5 180915260 + 168552042 168552331 AluSc5 308 - 0 288 116234 276 1 0 12 chain 15971 chr5 180915260 + 168561573 168561755 L1PA6 6164 + 5973 6155 138451 182 chain 4547 chr5 180915260 + 168603645 168603772 MER58A 224 - 15 172 200253 19 1 0 5 52 83 50 chain 25076 chr5 180915260 + 168608463 168608759 AluSc 308 + 0 294 104430 131 1 0 113 1 0 50 chain 3180 chr5 180915260 + 168622986 168623080 L1MB2 1706 - 73 152 221327 22 1 0 11 40 26 20 chain 17562 chr5 180915260 + 168635180 168635432 L1PA7 6471 - 1525 1778 133701 20 1 0 30 6 3 10 0 1 56 4 8 125 chain 118680 chr5 180915260 + 168635432 168636958 L1PA7 6471 + 4954 6468 31542 24 1 0 329 23 3 289 0 4 20 1 0 230 0 1 73 8 15 164 8 6 196 0 1 52 13 12 95 chain 107068 chr5 180915260 + 168638648 168640031 L1PA7 6471 - 4 1405 34953 152 10 11 5 0 2 107 0 4 82 0 11 246 7 9 108 1 0 30 0 2 75 3 0 20 0 4 93 0 3 78 5 0 115 27 3 198 0 22 21 chain 38606 chr5 180915260 + 168640031 168640533 L1PA7 6471 + 4522 5059 70846 70 0 2 130 2 1 79 0 2 12 8 7 7 0 1 19 1 33 174 chain 5495 chr5 180915260 + 168701065 168701204 MER5A 189 + 20 162 190096 4 0 1 39 60 62 36 chain 19026 chr5 180915260 + 168702496 168702845 THE1A 353 - 0 353 130046 16 8 6 52 18 24 13 9 9 32 1 0 6 22 21 12 0 3 49 2 1 109 chain 21234 chr5 180915260 + 168708209 168708465 AluSc5 308 + 0 266 123082 18 0 9 103 0 1 135 chain 18451 chr5 180915260 + 168733875 168734244 THE1D 372 + 11 372 131637 45 10 1 17 3 0 6 20 25 4 1 0 57 46 47 11 1 0 129 0 6 6 6 0 7 chain 35255 chr5 180915260 + 168737639 168738072 L1PA6 6164 - 2 429 75855 6 7 0 139 1 2 280 chain 21355 chr5 180915260 + 168742539 168742762 AluYa5 310 + 85 308 122667 223 chain 8186 chr5 180915260 + 168764744 168764839 MSTC 436 - 0 95 170039 95 chain 8478 chr5 180915260 + 168788519 168788630 MLT1C 463 + 351 463 168413 56 0 1 55 chain 21819 chr5 180915260 + 168799670 168800245 L1PB3 3668 + 3160 3597 120946 41 14 15 60 8 10 5 1 0 32 14 23 21 0 3 5 15 0 16 1 0 63 0 1 21 135 6 18 1 0 3 1 0 22 14 12 29 7 3 13 2 1 9 0 1 4 chain 196473 chr5 180915260 + 168805703 168808057 L1PA7 6471 + 4113 6468 19468 916 10 6 162 0 12 67 0 1 339 1 4 90 4 1 40 0 1 54 0 1 224 10 0 161 0 1 24 1 0 251 chain 158062 chr5 180915260 + 168808058 168810548 L1PB1 5432 + 3279 5420 23540 49 10 9 4 0 1 263 2 0 106 0 1 15 4 8 186 2 4 4 1 0 10 325 0 512 1 0 176 1 2 72 0 2 91 3 4 301 10 9 6 3 0 24 1 0 8 1 0 11 4 0 12 2 0 51 3 2 14 1 0 44 1 0 16 3 0 6 17 6 19 6 5 14 2 0 24 1 0 18 0 3 12 0 2 5 3 0 10 chain 96215 chr5 180915260 + 168813049 168814153 L1PA6 6164 + 5057 6160 37761 959 2 1 143 chain 10667 chr5 180915260 + 168833791 168833979 L1MA5 2750 - 523 702 157535 30 12 13 75 12 4 6 1 0 47 1 0 4 chain 6087 chr5 180915260 + 168858761 168858908 MER63D 473 + 118 248 184524 12 29 0 56 25 37 25 chain 128826 chr5 180915260 + 168871117 168872652 HERVL-int 5654 + 2759 4299 28355 574 2 0 99 0 1 158 1 2 43 0 1 4 1 0 296 0 5 357 chain 407784 chr5 180915260 + 168902278 168907719 L1PB1 5432 - 5 5420 9855 11 3 0 12 1 0 13 1 0 21 1 0 24 2 0 18 3 0 32 22 9 7 1 0 43 1 0 12 4 7 51 2 0 8 26 0 3 2 0 9 1 0 6 4 3 24 1 0 13 5 0 154 1 0 320 3 0 449 11 18 133 47 1 39 0 1 240 0 5 9 4 5 153 4 5 156 3 0 574 1 0 19 1 0 238 0 5 80 1 2 130 1 3 165 0 1 31 0 1 339 0 3 78 3 4 52 0 2 24 12 8 245 2 6 448 0 1 20 1 60 328 3 2 474 17 18 33 1 0 7 chain 56647 chr5 180915260 + 168918749 168919941 L1MA2 4263 + 3285 4114 54752 174 345 1 107 22 18 77 1 0 130 17 14 150 22 19 83 7 0 47 1 0 9 chain 128198 chr5 180915260 + 168934630 168936054 L1PA4 6152 - 0 1426 28409 857 0 1 147 0 1 420 chain 133156 chr5 180915260 + 168936054 168937559 L1PA4 6152 + 3227 4708 27397 567 38 14 900 chain 170416 chr5 180915260 + 168944028 168946054 L1PA7 6471 - 6 2026 22004 660 0 1 104 0 2 231 0 1 68 0 4 285 0 2 436 0 8 126 24 0 92 chain 26743 chr5 180915260 + 168952147 168952500 THE1A 353 - 0 353 97186 75 0 1 63 3 0 5 1 4 95 1 0 110 chain 129532 chr5 180915260 + 168952513 168954087 THE1A-int 1579 - 13 1579 28200 62 8 0 924 0 1 42 2 1 536 chain 16705 chr5 180915260 + 168968861 168969095 Tigger1 2417 + 1248 1481 136393 40 0 4 7 11 5 105 0 1 71 chain 83447 chr5 180915260 + 168979559 168980621 L1PA11 4918 + 3458 4517 42140 93 8 12 133 1 0 614 0 4 17 2 0 51 11 12 13 2 0 67 2 0 14 1 0 20 4 0 9 chain 3944 chr5 180915260 + 169011251 169011296 MER33 330 + 137 182 208211 45 chain 15090 chr5 180915260 + 169011867 169012037 AluYb8 318 + 1 305 141061 27 0 134 143 chain 25860 chr5 180915260 + 169037283 169037594 AluSp 311 + 0 304 100605 91 0 3 34 10 0 176 chain 145673 chr5 180915260 + 169038483 169040409 L1PB1 5432 - 1415 3336 25230 280 21 1 11 0 5 117 2 1 53 3 1 24 0 2 150 0 8 147 4 5 64 0 8 218 0 1 26 1 4 34 2 3 18 1 3 6 3 0 6 0 1 325 11 0 399 chain 33093 chr5 180915260 + 169040416 169041149 L1PB1 5432 + 4034 5427 79064 184 1 2 76 190 874 50 2 1 15 1 0 41 8 7 12 3 0 13 10 0 15 26 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 17478 chr5 180915260 + 169044244 169044462 L1P5 443 + 219 437 134306 218 chain 88880 chr5 180915260 + 169045256 169046320 MER11B 1079 + 0 1063 40052 264 3 0 320 12 11 172 0 2 149 0 1 144 chain 270239 chr5 180915260 + 169047063 169050195 L1P1 4361 + 1 4286 15175 573 1 0 128 12 5 98 0 1160 1252 0 2 931 1 0 136 chain 65029 chr5 180915260 + 169051504 169052337 L1P3 4156 - 17 862 50560 24 2 1 7 2 0 75 0 7 298 0 2 142 0 5 95 0 1 188 chain 18732 chr5 180915260 + 169053505 169053784 Tigger1 2417 + 2080 2354 130875 91 12 11 68 11 5 18 0 1 59 1 2 19 chain 43145 chr5 180915260 + 169055168 169055734 L1PA8 5853 - 0 560 65234 6 0 1 85 2 1 19 3 2 49 3 2 9 2 1 68 2 0 46 1 0 271 chain 8178 chr5 180915260 + 169055735 169055831 L1PA8 5853 + 5205 5301 170078 96 chain 11962 chr5 180915260 + 169057644 169057898 L1PB1 5432 - 12 252 152359 16 1 0 11 2 1 22 1 0 24 2 0 14 1 0 4 3 1 19 36 31 23 0 1 15 2 1 16 2 1 40 chain 3029 chr5 180915260 + 169061786 169061818 Cheshire 1285 + 40 72 224418 32 chain 2938 chr5 180915260 + 169066737 169066802 MLT1J 494 - 367 431 226370 31 20 19 14 chain 102136 chr5 180915260 + 169071641 169073313 L1PA8 5853 - 0 1365 36226 88 6 5 19 3 2 32 1 2 6 4 0 11 1 0 9 2 1 70 2 0 44 1 0 80 2 3 194 0 8 145 0 11 37 0 2 75 0 2 258 321 0 261 chain 23555 chr5 180915260 + 169085229 169085505 AluY 311 + 27 304 112819 105 0 1 171 chain 24312 chr5 180915260 + 169089485 169089843 THE1D 372 - 0 364 108597 148 13 14 16 29 34 152 chain 7001 chr5 180915260 + 169093226 169093310 MLT1A0 366 - 223 307 177459 84 chain 8086 chr5 180915260 + 169127699 169127801 LTR54 533 + 0 102 170561 102 chain 89813 chr5 180915260 + 169152515 169153580 L1PA6 6164 - 4 1068 39717 6 3 0 145 0 1 223 0 1 74 2 1 311 1 0 5 1 3 294 chain 25261 chr5 180915260 + 169194061 169194414 L1PA15 4387 - 378 737 103411 77 1 0 40 3 1 63 2 0 16 2 0 10 0 2 100 0 11 39 chain 25487 chr5 180915260 + 169234565 169234863 AluY 311 + 11 308 102282 112 2 0 9 0 1 175 chain 540232 chr5 180915260 + 169246648 169252779 L1PA5 6144 + 3 6139 2784 864 0 1 841 1 0 373 0 2 387 0 1 692 1 0 1464 1 0 669 0 4 838 chain 16823 chr5 180915260 + 169270330 169270529 AluY 311 + 85 286 136053 37 0 1 9 0 1 153 chain 4855 chr5 180915260 + 169299814 169299869 MIRb 242 + 78 133 196722 55 chain 72520 chr5 180915260 + 169423878 169424838 LTR5_Hs 974 - 0 974 47257 103 22 20 17 8 15 163 1 0 188 6 7 171 0 1 161 5 13 115 chain 54539 chr5 180915260 + 169431497 169432084 L1PA2 6032 + 5445 6032 56005 587 chain 6282 chr5 180915260 + 169437169 169437260 MER20 218 - 94 187 182937 19 1 0 17 0 1 4 1 3 49 chain 4185 chr5 180915260 + 169441265 169441316 MLT1D 503 + 22 72 204763 38 1 0 12 chain 24198 chr5 180915260 + 169487757 169488056 AluSg 306 + 4 302 109225 275 0 1 9 2 0 13 chain 23206 chr5 180915260 + 169577269 169577520 L1PA5 6144 + 5720 5971 114660 251 chain 6868 chr5 180915260 + 169578712 169578819 MER20 218 + 32 129 178442 51 16 6 40 chain 25461 chr5 180915260 + 169616713 169617188 L1PB1 5432 + 4862 5422 102406 230 11 10 12 5 0 24 1 0 8 1 0 5 12 8 9 2 0 20 17 124 14 2 0 6 4 3 11 2 0 24 1 0 21 7 6 7 1 0 18 chain 189711 chr5 180915260 + 169640528 169642632 L1PA3long 6157 - 8 2116 20083 25 9 0 8 0 9 793 0 4 1269 chain 33720 chr5 180915260 + 169642632 169642998 L1P1 4361 + 2518 2884 77766 366 chain 556417 chr5 180915260 + 169666780 169672799 L1PA2 6032 - 2 6028 681 779 0 1 707 1 0 1487 0 1 1985 1 0 350 0 7 709 chain 6205 chr5 180915260 + 169699981 169700086 MER57F 435 + 303 431 183551 9 0 34 59 15 4 22 chain 28980 chr5 180915260 + 169841275 169841673 MER57B1 401 + 0 401 89093 83 11 13 241 10 11 53 chain 50355 chr5 180915260 + 169882850 169883479 L1PA8 5853 + 5231 5853 58753 333 1 0 33 1 0 4 0 1 8 2 0 72 1 0 8 1 0 49 7 6 15 2 1 92 chain 413010 chr5 180915260 + 169884473 169890124 L1PB1 5432 + 77 5430 9721 324 1 0 998 9 5 214 0 1 16 0 18 276 0 1 231 10 11 39 0 1 430 2 1 197 1 2 215 1 0 107 1 0 195 0 30 16 1 6 207 3 4 110 3 0 189 0 1 40 7 6 152 303 0 308 0 1 200 24 6 238 1 0 221 0 9 35 1 0 11 1 0 9 5 1 8 2 0 45 10 9 10 6 5 37 9 8 15 3 0 5 1 0 4 12 3 19 8 5 14 2 0 24 1 0 15 7 6 9 0 1 5 2 0 14 2 0 10 chain 51000 chr5 180915260 + 169899464 169900250 L1PB1 5432 - 19 771 58307 9 1 0 13 1 0 21 1 0 24 2 0 14 14 11 9 17 0 6 0 6 4 1 0 16 1 0 43 2 1 15 2 1 53 2 0 9 16 11 13 1 0 20 15 11 299 0 1 142 chain 6316 chr5 180915260 + 169902040 169902183 LTR12 884 - 677 776 182666 20 4 3 45 42 0 24 1 0 7 chain 3238 chr5 180915260 + 170011167 170011208 MER117 194 + 109 149 220285 4 1 0 36 chain 4647 chr5 180915260 + 170014075 170014132 MLT1D 503 - 0 57 199088 57 chain 15884 chr5 180915260 + 170152128 170152362 L1MA2 4263 + 3857 4084 138695 101 1 0 8 1 0 92 11 6 20 chain 29785 chr5 180915260 + 170189084 170189495 LTR7 482 - 0 482 85530 185 10 11 22 8 40 109 8 46 69 chain 285243 chr5 180915260 + 170190743 170194457 HERVH-int 3825 - 0 3825 14339 223 0 1 38 0 1 113 1 4 6 3 0 101 8 218 39 9 11 930 0 3 112 0 10 299 4 31 383 0 1 125 0 1 94 2 0 5 0 2 105 0 1 127 0 3 59 1 0 49 13 13 15 1 0 50 24 3 18 45 0 15 42 0 12 49 1 14 1 0 9 1 0 10 1 0 24 0 1 4 1 0 11 2 0 25 0 4 168 1 0 110 0 11 212 chain 27906 chr5 180915260 + 170194459 170194868 LTR7 482 - 0 482 93341 85 6 8 99 0 32 37 0 1 105 34 72 43 chain 89385 chr5 180915260 + 170225808 170226830 L1PA5 6144 - 6 1044 39850 153 6 22 863 chain 56348 chr5 180915260 + 170226830 170227461 L1PA5 6144 + 4467 5098 54493 631 chain 38668 chr5 180915260 + 170253279 170253757 LTR19A 502 - 0 475 71196 70 8 5 400 chain 27957 chr5 180915260 + 170254548 170254964 MER4D1 891 + 0 448 93139 25 6 10 5 3 0 9 0 2 25 0 1 141 0 2 17 4 32 37 1 0 8 0 1 97 1 0 18 1 0 18 chain 9756 chr5 180915260 + 170257880 170257997 MER41B 635 + 518 635 161825 117 chain 17978 chr5 180915260 + 170273776 170274059 L1MA2 4263 - 150 424 132914 9 1 0 34 36 30 74 1 0 8 1 0 119 chain 14621 chr5 180915260 + 170278302 170278615 L1PB1 5432 - 12 293 142521 16 1 0 13 7 6 15 1 0 24 2 0 14 1 0 5 2 0 15 21 10 6 3 0 15 8 7 37 1 0 16 2 1 52 2 0 7 8 4 11 1 0 7 chain 14714 chr5 180915260 + 170278617 170278809 L1PB1 5432 + 4933 5127 142226 74 0 4 92 1 2 10 3 0 12 chain 281205 chr5 180915260 + 170298956 170303155 L1PA10 4194 - 33 3962 14577 11 1 0 33 4 1 184 0 2 54 0 4 110 5 6 82 2 1 19 6 10 292 22 0 118 315 0 245 26 27 22 23 26 163 2 3 9 0 1 108 1 0 313 1 0 4 0 4 54 0 4 13 2 0 5 1 7 88 0 1 20 0 3 232 7 11 104 2 0 662 1 13 184 0 1 31 0 11 164 0 1 30 0 59 94 0 3 27 2 0 84 3 0 6 11 5 12 1 0 10 1 0 7 1 0 7 1 0 21 2 0 22 45 19 8 1 0 5 11 9 22 1 0 8 1 0 10 chain 36780 chr5 180915260 + 170312814 170313462 Tigger2 2703 - 734 1397 73828 50 16 8 50 9 6 138 1 0 45 93 113 132 0 1 5 24 30 85 chain 7571 chr5 180915260 + 170313509 170313599 Tigger2b_Pri 1066 - 786 878 173721 6 0 2 84 chain 12603 chr5 180915260 + 170319148 170319313 L1PA8 5853 - 0 165 149827 93 1 0 19 2 1 39 0 2 11 chain 493450 chr5 180915260 + 170324424 170330496 L1PA7 6471 - 13 6020 7202 92 8 4 180 0 1 414 122 0 15 1 2 123 0 4 257 0 7 683 0 2 58 0 1 30 1 0 327 0 3 419 2 0 75 1 6 17 4 5 387 3 2 244 0 4 52 0 1 402 1 2 64 15 4 855 5 6 212 0 3 507 3 27 233 3 19 232 0 1 25 chain 9462 chr5 180915260 + 170325126 170325240 L1P3 4156 - 1349 1464 162025 76 0 1 38 chain 138147 chr5 180915260 + 170348071 170349955 L1P2 5180 - 2 5178 26464 4 1 0 39 1 0 46 1 0 250 0 3 320 0 3268 170 4 0 179 0 4 93 0 15 224 1 0 48 1 0 4 0 12 27 4 15 11 8 0 89 4 3 82 35 34 44 1 0 44 6 5 143 chain 10402 chr5 180915260 + 170354283 170354401 L1PA7 6471 - 10 128 158682 118 chain 509098 chr5 180915260 + 170357431 170363412 L1PA5 6144 - 15 6141 6236 913 1 0 69 0 5 256 0 1 903 1 0 307 2 0 479 1 0 26 1 0 856 0 1 111 0 83 72 0 3 7 0 4 54 0 19 501 6 5 104 0 3 123 1 2 41 19 10 343 0 17 69 6 5 569 1 13 13 11 24 115 chain 9529 chr5 180915260 + 170385958 170386086 MER85 139 - 0 138 162932 39 1 11 88 chain 146024 chr5 180915260 + 170391403 170393007 L1PA3long 6157 - 0 1604 25167 1604 chain 98927 chr5 180915260 + 170393007 170394083 L1PA3long 6157 + 3454 4530 37044 1076 chain 10299 chr5 180915260 + 170397560 170397685 MER85 139 + 4 139 159135 86 0 10 39 chain 22086 chr5 180915260 + 170406463 170406817 THE1B 368 + 0 366 119858 41 1 16 49 1 2 23 24 24 11 5 3 25 7 5 167 chain 119860 chr5 180915260 + 170406819 170408370 THE1B-int 1605 + 0 1605 31101 15 0 2 216 0 11 186 0 25 10 0 2 410 4 5 254 2 12 18 12 15 158 2 1 159 0 1 105 chain 21128 chr5 180915260 + 170423967 170424320 THE1D 372 + 16 372 123458 22 40 41 28 1 0 56 0 2 16 10 12 27 10 9 143 chain 28250 chr5 180915260 + 170427580 170428039 LTR7B 505 - 0 505 92106 51 18 17 75 1 0 12 0 1 69 45 16 15 3 65 42 1 3 26 0 10 63 0 2 38 chain 141901 chr5 180915260 + 170432148 170433746 L1PA4 6152 + 4540 6138 25840 761 1 0 700 4 5 132 chain 31608 chr5 180915260 + 170435417 170435850 LTR7B 505 - 0 505 81469 51 14 13 76 1 0 85 0 2 29 3 65 69 0 10 105 chain 10203 chr5 180915260 + 170443548 170443662 L1PA5 6144 - 9 123 159609 114 chain 467959 chr5 180915260 + 170443806 170450140 L1PA8A 6298 - 7 6264 8112 83 1 0 15 3 2 130 1 0 25 1 0 154 0 2 299 0 1 8 1 0 79 6 5 86 0 1 340 2 1 241 2 0 190 0 1 754 20 21 155 2 1 298 5 4 29 1 0 6 33 20 230 0 3 134 0 4 318 0 1 86 1 0 61 6 0 113 0 2 383 0 2 468 0 3 263 0 3 117 15 11 17 3 0 7 2 11 10 2 0 33 29 8 107 15 18 137 0 1 7 4 5 156 2 3 106 1 0 70 22 20 14 2 0 78 8 0 22 1 0 39 17 10 15 46 40 15 2 0 12 1 0 7 2 1 11 2 1 9 1 0 9 91 72 11 1 0 16 1 0 6 chain 559052 chr5 180915260 + 170485167 170491311 L1PA3long 6157 - 0 6151 416 849 2 1 1362 0 2 584 0 2 667 1 0 248 0 4 1973 0 1 458 chain 8517 chr5 180915260 + 170502012 170502141 MER85 139 - 0 138 168209 14 20 29 95 chain 551773 chr5 180915260 + 170510967 170516977 L1PA2 6032 - 3 6020 1213 2467 0 1 1870 0 2 865 0 4 808 chain 22045 chr5 180915260 + 170518591 170518931 THE1B 368 + 0 368 120047 40 0 15 48 8 9 80 3 0 6 0 3 7 30 42 118 chain 524767 chr5 180915260 + 170524658 170531027 L1PA7 6471 - 17 6432 4706 832 2 1 364 10 31 72 0 5 27 1 0 173 1 0 271 2 14 616 2 1 230 0 4 240 0 3 70 2 0 602 0 3 374 0 2 5 7 8 127 7 9 266 0 2 752 2 1 86 5 4 964 8 11 119 4 0 126 chain 29068 chr5 180915260 + 170532105 170532410 AluYa5 310 + 1 306 88683 305 chain 19034 chr5 180915260 + 170537867 170538072 L1PA2 6032 - 3 208 130017 205 chain 59853 chr5 180915260 + 170574765 170575411 SVA_F 1814 + 1166 1813 52900 477 0 1 169 chain 20685 chr5 180915260 + 170580780 170581038 AluSp 311 + 11 289 125015 19 4 24 235 chain 56311 chr5 180915260 + 170601819 170602481 L1PA7 6471 - 14 688 54959 251 0 1 260 1 0 49 1 13 100 chain 21732 chr5 180915260 + 170602482 170602739 L1PA7 6471 + 5503 5765 121271 65 0 2 51 0 3 141 chain 100008 chr5 180915260 + 170605026 170606189 L1PA7 6471 - 1 1162 36774 172 4 3 197 0 1 476 1 0 82 1 0 230 chain 45021 chr5 180915260 + 170612930 170613512 Tigger1 2417 - 1114 1705 63036 126 1 0 212 0 3 74 1 0 108 0 2 14 0 5 37 0 1 9 chain 25646 chr5 180915260 + 170613530 170613801 AluYa5 310 - 1 272 101514 271 chain 435587 chr5 180915260 + 170641905 170647314 L1PA8 5853 - 6 5446 9179 87 6 0 19 2 1 52 2 1 5 1 0 74 2 0 44 1 0 49 1 0 84 0 1 79 0 1 263 8 7 70 2 0 338 0 4 380 8 1 46 1 0 649 2 3 356 0 6 188 0 1 46 0 1 18 0 9 97 0 4 683 15 0 33 1 5 101 0 1 147 1 2 52 7 10 109 0 6 339 2 3 623 3 2 96 0 6 11 7 1 33 3 10 112 1 0 23 1 0 5 0 22 21 chain 9279 chr5 180915260 + 170665171 170665300 MER85 139 + 0 139 164171 96 4 14 29 chain 6370 chr5 180915260 + 170693558 170693630 FLAM_A 137 + 53 125 182247 72 chain 4777 chr5 180915260 + 170710661 170710714 U13 108 + 0 53 197605 53 chain 6739 chr5 180915260 + 170741028 170741158 L1PB1 5432 - 10 124 179405 18 9 0 13 1 0 21 1 0 24 2 0 13 10 7 18 chain 3697 chr5 180915260 + 170747946 170748006 Tigger2a 444 + 382 443 211987 14 6 7 40 chain 23323 chr5 180915260 + 170761256 170761547 AluY 311 + 0 298 114067 19 1 9 105 2 1 164 chain 22952 chr5 180915260 + 170766347 170766619 AluSc8 310 + 26 300 115845 107 0 2 165 chain 76016 chr5 180915260 + 170782767 170783605 L1PA3long 6157 - 0 838 45470 838 chain 4956 chr5 180915260 + 170788071 170788147 MER96B 391 - 232 309 195638 15 0 1 14 1 0 22 1 2 23 chain 44374 chr5 180915260 + 170788291 170788844 MER41A 554 + 0 554 63726 452 1 2 100 chain 24745 chr5 180915260 + 170792726 170793017 AluSp 311 + 4 295 106192 291 chain 34480 chr5 180915260 + 170796083 170796555 LTR7B 505 + 0 505 76941 110 9 21 67 33 0 4 0 55 79 1 0 169 chain 33420 chr5 180915260 + 170805273 170805668 L1PA7 6471 - 3 394 78534 7 4 0 353 2 0 7 0 2 22 chain 6321 chr5 180915260 + 170818062 170818148 Tigger3a 397 + 196 310 182635 27 0 2 22 1 27 36 chain 144008 chr5 180915260 + 170830006 170831881 SVA_F 1814 - 0 1567 25477 625 51 0 223 3 18 35 271 0 25 1 0 641 chain 3735 chr5 180915260 + 170830631 170830680 SVA_F 1814 - 801 848 108586 2 1 0 10 1 0 35 chain 13546 chr5 180915260 + 170830943 170831114 SVA_F 1814 - 710 835 96247 13 46 0 112 chain 887 chr5 180915260 + 170830959 170831002 SVA_F 1814 - 916 1043 175964 17 2 7 19 0 79 5 chain 2955 chr5 180915260 + 170831131 170831161 SVA_F 1814 - 867 897 225999 30 chain 20094 chr5 180915260 + 170903302 170903527 L1PA5 6144 - 49 274 126848 225 chain 12108 chr5 180915260 + 170924766 170924903 L1PA7 6471 - 9 146 151766 137 chain 8002 chr5 180915260 + 170929967 170930055 L1PA7 6471 - 19 107 171042 88 chain 34755 chr5 180915260 + 170973886 170974357 L1PA8 5853 - 0 491 76535 93 1 0 19 2 1 50 1 0 11 1 0 57 0 18 40 1 0 126 8 11 24 0 4 37 chain 9446 chr5 180915260 + 170979391 170979503 L1PA7 6471 - 1903 2013 162927 49 2 0 61 chain 160165 chr5 180915260 + 170979503 170981354 L1PA7 6471 + 4596 6453 23318 201 0 4 820 1 0 77 0 2 606 1 0 18 0 2 127 chain 6858 chr5 180915260 + 171028943 171029041 HSMAR2 1300 - 0 100 178520 54 6 7 30 0 1 8 chain 15340 chr5 180915260 + 171029993 171030185 Tigger2a 444 - 246 438 140370 192 chain 36626 chr5 180915260 + 171082345 171082766 L1PA4 6152 + 5714 6136 74062 287 1 2 133 chain 3075 chr5 180915260 + 171116678 171116714 MLT2B2 565 - 3 39 223452 36 chain 5094 chr5 180915260 + 171120109 171120174 MIR 256 + 73 138 194139 65 chain 13462 chr5 180915260 + 171138592 171138860 MER66B 489 - 220 489 146479 66 41 0 9 3 44 103 27 28 19 chain 24396 chr5 180915260 + 171159784 171160082 L1PA6 6164 - 6 331 108099 154 1 28 143 chain 28841 chr5 180915260 + 171180441 171180778 L1PA5 6144 + 5761 6144 89710 276 2 48 59 chain 27257 chr5 180915260 + 171197672 171197971 L1PA2 6032 - 8 307 95409 299 chain 4493 chr5 180915260 + 171209142 171209229 LTR12B 2670 + 2126 2239 200871 44 22 48 21 chain 17677 chr5 180915260 + 171230976 171231225 L1PA8 5853 + 5608 5853 133754 69 3 2 13 2 1 47 9 8 12 1 0 93 chain 3254 chr5 180915260 + 171254488 171254551 L1MC4 1079 + 29 91 219911 35 15 14 13 chain 23659 chr5 180915260 + 171259079 171259454 L1PA16 3655 - 36 389 112260 16 5 0 7 25 11 8 3 0 31 8 9 9 0 1 236 2 0 25 chain 4200 chr5 180915260 + 171262888 171262938 MER53 195 + 14 64 204535 50 chain 19904 chr5 180915260 + 171270559 171270817 AluSc 308 + 20 273 127464 22 5 0 80 0 1 7 1 0 143 chain 125956 chr5 180915260 + 171309825 171311928 L1PB1 5432 - 19 1803 29114 9 1 0 9 1 4 21 1 0 24 2 0 14 8 5 18 20 9 4 1 0 15 1 0 40 9 8 12 2 1 15 0 1 37 2 0 5 20 15 12 1 0 18 3 0 11 4 3 188 195 0 140 0 4 43 29 5 22 11 10 63 41 0 97 0 4 98 0 1 95 1 0 127 1 0 128 6 5 136 42 5 197 4 7 99 chain 13098 chr5 180915260 + 171310384 171310533 L1PA4 6152 + 5994 6143 147853 149 chain 3029 chr5 180915260 + 171311594 171311626 L1PB1 5432 - 2423 2455 224387 32 chain 38613 chr5 180915260 + 171313150 171313578 L1PA4 6152 + 5697 6143 71276 80 0 18 348 chain 38301 chr5 180915260 + 171342806 171343254 L1PA5 6144 + 5697 6143 71706 248 1 0 57 0 1 129 3 1 10 chain 18792 chr5 180915260 + 171357534 171357743 SVA_E 1901 + 1692 1896 130706 198 5 0 6 chain 14766 chr5 180915260 + 171379794 171379985 MER30 238 + 38 238 142043 70 9 19 41 1 0 70 chain 24005 chr5 180915260 + 171404568 171404915 THE1B 368 - 13 368 110305 61 1 0 75 8 10 5 3 0 12 3 0 24 8 6 103 0 15 44 chain 51377 chr5 180915260 + 171406700 171407291 LTR10C 591 - 0 591 58042 591 chain 23263 chr5 180915260 + 171447205 171447556 Tigger3b 1229 + 291 642 114369 25 0 6 8 2 0 132 8 7 83 24 21 69 chain 17007 chr5 180915260 + 171450970 171451719 L1MB3 1562 - 11 450 135571 21 7 6 51 103 67 38 0 1 17 1 0 40 357 84 11 7 0 8 2 9 86 chain 26034 chr5 180915260 + 171457844 171458174 THE1C 375 - 40 375 99887 151 3 4 41 0 4 135 chain 113002 chr5 180915260 + 171458186 171459734 THE1C-int 1605 - 13 1578 33376 129 0 1 26 26 40 353 0 1 13 13 0 9 0 13 155 5 6 85 13 7 6 1 0 39 1 2 191 5 0 7 4 9 48 5 12 279 1 0 134 chain 2485 chr5 180915260 + 171460105 171460141 THE1C 375 - 141 188 233268 17 0 11 19 chain 14803 chr5 180915260 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chr5 180915260 + 171701762 171702044 AluY 311 + 0 287 115462 87 0 4 41 0 1 154 chain 22919 chr5 180915260 + 171702057 171702382 THE1C 375 - 39 368 116019 123 7 10 16 1 0 6 0 1 19 9 10 144 chain 4407 chr5 180915260 + 171706205 171706254 MADE1 96 - 2 51 201851 49 chain 56510 chr5 180915260 + 171727857 171728476 L1PA3long 6157 + 5367 5985 54845 457 1 0 161 chain 4852 chr5 180915260 + 171728923 171728985 MER21C 908 + 600 661 196765 44 1 0 17 chain 42733 chr5 180915260 + 171742372 171742897 MER41A 554 + 0 526 65740 134 0 1 391 chain 31862 chr5 180915260 + 171743116 171743539 MER57A1 433 + 8 433 81078 252 17 18 78 0 1 76 chain 3984 chr5 180915260 + 171757022 171757095 Tigger4a 237 - 11 84 207636 34 10 11 8 1 0 20 chain 3413 chr5 180915260 + 171768960 171768999 MSTB 430 + 391 430 216877 39 chain 27670 chr5 180915260 + 171779542 171779896 THE1A 353 + 0 353 94147 110 1 0 118 0 1 5 2 1 118 chain 6473 chr5 180915260 + 171791798 171791871 MER63A 208 + 86 159 181451 73 chain 54465 chr5 180915260 + 171823992 171824652 MER11B 1079 + 392 1057 56055 145 0 1 4 6 5 135 0 1 87 1 3 124 0 1 135 0 1 23 chain 80352 chr5 180915260 + 171826519 171827621 HERVK11-int 2540 + 1180 2235 43455 8 3 0 27 10 0 11 1 0 27 12 1 36 21 1 428 17 12 92 0 1 11 1 0 190 6 5 74 2 6 125 chain 81740 chr5 180915260 + 171828615 171829643 MER11B 1079 + 7 1042 42877 146 18 5 158 1 18 203 0 1 4 11 10 17 6 5 107 0 1 88 1 3 190 0 1 78 chain 11752 chr5 180915260 + 171832997 171833136 MER85 139 + 0 139 153254 139 chain 15388 chr5 180915260 + 171836415 171836706 L1MA5A 2387 - 97 365 140239 60 29 0 10 11 7 13 0 1 38 0 12 42 6 5 33 1 0 33 4 3 11 chain 22330 chr5 180915260 + 171854821 171855071 AluSg7 307 - 49 299 118779 250 chain 11868 chr5 180915260 + 171860090 171860277 Tigger3a 397 + 140 315 152750 13 31 19 143 chain 22623 chr5 180915260 + 171887305 171887597 AluSc8 310 + 0 301 117473 47 0 6 77 12 15 156 chain 30025 chr5 180915260 + 171908216 171908652 MER1A 529 + 100 523 84729 42 6 7 91 0 1 100 0 1 114 39 23 44 chain 23372 chr5 180915260 + 171916188 171916573 MSTA 426 - 0 426 113797 109 5 23 37 54 52 68 0 3 5 1 23 106 chain 3220 chr5 180915260 + 171920588 171920625 tRNA-Cys-TGY 72 - 35 72 220586 37 chain 9280 chr5 180915260 + 171964822 171965062 L1ME1 1623 - 841 1058 164164 27 1 0 13 6 0 19 1 0 5 3 1 15 78 65 72 chain 9399 chr5 180915260 + 171966893 171967005 MLT1A0 366 + 254 366 163562 112 chain 32358 chr5 180915260 + 171982391 171982825 MLT2A1 477 + 0 477 80260 170 4 1 10 0 1 17 0 1 113 0 10 62 21 55 37 chain 21221 chr5 180915260 + 172003635 172003871 AluY 311 + 74 311 123134 52 0 1 184 chain 50860 chr5 180915260 + 172040457 172041269 L1MA8 2339 + 209 997 58394 147 107 93 29 2 0 47 1 0 52 8 0 226 5 3 56 0 3 132 chain 3291 chr5 180915260 + 172050042 172050089 MIRb 242 + 68 116 219152 5 1 0 36 0 2 5 chain 9332 chr5 180915260 + 172063389 172063501 L1PB4 2604 - 104 216 163892 112 chain 34910 chr5 180915260 + 172077612 172078156 LTR10F 562 - 0 562 76332 49 1 2 8 0 3 223 5 11 12 0 80 35 78 1 52 0 5 81 chain 187230 chr5 180915260 + 172078452 172080919 HERVIP10FH-int 2884 - 60 2736 20314 10 0 2 23 10 4 14 1 0 16 1 0 50 1 0 25 0 3 38 1 0 8 6 7 211 5 6 133 1 0 20 6 5 199 1 0 212 0 1 33 15 224 19 1 0 92 5 0 61 1 0 11 1 0 9 3 0 7 5 2 144 0 1 19 1 6 6 0 10 258 0 2 62 0 1 192 1 4 37 5 10 94 7 10 88 1 0 36 4 1 106 0 2 77 11 0 16 0 2 47 chain 6544 chr5 180915260 + 172083738 172083818 LTR10F 562 - 475 555 180897 80 chain 85552 chr5 180915260 + 172084324 172085290 LTR13A 966 + 0 966 41323 820 1 0 75 0 1 70 chain 3480 chr5 180915260 + 172100557 172100600 MER53 195 - 14 57 215659 43 chain 21898 chr5 180915260 + 172100866 172101154 AluSx1 309 + 7 294 120632 126 24 23 138 chain 4102 chr5 180915260 + 172101534 172101616 MER5B 177 + 31 115 205911 16 24 26 42 chain 2378 chr5 180915260 + 172132880 172132955 MER58A 224 - 144 217 234403 25 0 1 4 8 25 7 20 0 11 chain 5697 chr5 180915260 + 172151916 172152018 MER20 218 - 66 173 188137 46 21 26 35 chain 2822 chr5 180915260 + 172170241 172170273 MIRb 242 + 87 119 228426 32 chain 4949 chr5 180915260 + 172209530 172209589 MSTD 398 + 339 398 195712 59 chain 9673 chr5 180915260 + 172211315 172211444 MSTA 426 + 7 154 162227 106 4 22 19 chain 30277 chr5 180915260 + 172214752 172215140 LTR7 482 + 0 471 84003 86 1 51 87 1 31 5 0 2 42 0 1 166 chain 11494 chr5 180915260 + 172236665 172236870 MER21A 919 + 708 919 154317 89 7 23 18 4 6 9 4 0 20 3 0 5 3 0 34 2 0 7 chain 32173 chr5 180915260 + 172240160 172240550 LTR7B 505 - 7 505 80573 133 1 0 85 0 2 17 0 97 49 0 10 105 chain 2747 chr5 180915260 + 172253999 172254139 MLT1F 544 + 237 439 229528 22 93 155 25 chain 4165 chr5 180915260 + 172256481 172256563 MER30 238 + 46 106 205028 12 23 1 47 chain 10847 chr5 180915260 + 172258683 172258868 L1PA7 6471 - 2 173 156798 10 2 0 47 47 35 79 chain 4724 chr5 180915260 + 172295487 172295602 L1MC1 2226 + 1994 2100 198225 39 0 1 13 46 36 17 chain 26678 chr5 180915260 + 172385947 172386241 AluY 311 + 4 299 97395 128 0 1 166 chain 4540 chr5 180915260 + 172415150 172415205 Tigger3c 601 - 493 548 200337 55 chain 6633 chr5 180915260 + 172420616 172420878 AluJr4 308 + 180 293 180221 17 157 6 66 0 4 13 2 0 7 chain 7154 chr5 180915260 + 172430913 172431048 MER20 218 + 87 216 176373 4 1 0 13 6 7 47 16 10 48 chain 20715 chr5 180915260 + 172448267 172448615 THE1B 368 - 12 368 124916 44 1 2 6 2 0 58 14 22 10 37 36 61 4 6 111 chain 9440 chr5 180915260 + 172448622 172448746 MSTB 430 - 307 430 163359 105 4 3 15 chain 6693 chr5 180915260 + 172471849 172471937 LTR54 533 - 446 533 179736 75 2 1 11 chain 26854 chr5 180915260 + 172480666 172480977 AluYk4 311 + 0 311 96795 311 chain 28064 chr5 180915260 + 172489747 172490049 AluYa5 310 - 8 310 92778 302 chain 24700 chr5 180915260 + 172542097 172542398 AluSp 311 - 0 300 106436 128 2 1 171 chain 35318 chr5 180915260 + 172549618 172549998 L1PA3long 6157 - 15 395 75775 380 chain 21515 chr5 180915260 + 172576189 172576539 THE1B 368 - 0 368 122084 49 5 13 18 4 9 105 3 2 79 14 0 9 17 37 47 chain 56758 chr5 180915260 + 172598451 172599153 L1PA5 6144 - 0 854 54683 6 2 0 104 1 15 13 0 7 9 7 0 328 0 1 57 1 4 112 1 11 48 0 126 13 chain 51195 chr5 180915260 + 172612067 172612846 L1PB1 5432 + 4603 5374 58190 24 3 0 98 0 18 156 1 3 199 21 23 20 1 0 14 5 1 9 6 4 48 2 1 15 1 0 46 1 0 11 26 15 19 2 0 5 1 0 14 2 0 24 1 0 4 chain 4535 chr5 180915260 + 172631031 172631088 HY3 101 + 36 93 200399 57 chain 20791 chr5 180915260 + 172679634 172679985 THE1D 372 - 2 362 124645 146 48 55 8 0 1 14 6 5 39 1 2 61 1 2 27 chain 8668 chr5 180915260 + 172681193 172681291 HY3 101 - 0 98 167370 98 chain 28746 chr5 180915260 + 172700248 172700561 AluYg6 310 + 0 310 90144 123 3 0 187 chain 27154 chr5 180915260 + 172703495 172703866 L1PA8 5853 + 5487 5853 95740 77 1 0 44 2 0 65 17 17 50 2 1 19 1 0 93 chain 23458 chr5 180915260 + 172708522 172708784 L1HS 6032 - 0 261 113328 22 1 0 239 chain 13294 chr5 180915260 + 172722484 172722630 L1PA4 6152 + 5997 6143 147112 146 chain 16039 chr5 180915260 + 172759597 172759866 AluJo 314 + 28 299 138250 97 41 46 22 12 9 97 chain 5555 chr5 180915260 + 172788679 172788763 MLT1C 463 - 12 97 189520 33 7 8 44 chain 4525 chr5 180915260 + 172810933 172810984 Eulor12 88 + 37 88 200495 51 chain 4297 chr5 180915260 + 172813004 172813059 MER103C 291 - 121 176 203265 55 chain 38458 chr5 180915260 + 172828813 172829230 L1PA3long 6157 - 0 417 71504 417 chain 567782 chr5 180915260 + 172829799 172835831 L1HS 6032 - 0 6032 38 6032 chain 11990 chr5 180915260 + 172840977 172841199 Tigger2 2703 + 2324 2530 152251 14 39 9 23 1 0 5 1 10 20 2 8 117 chain 3119 chr5 180915260 + 172846275 172846312 MLT1J 494 + 94 131 222564 37 chain 17376 chr5 180915260 + 172897780 172898011 AluSc8 310 + 58 293 134578 74 0 3 122 14 15 21 chain 5131 chr5 180915260 + 172911243 172911304 MIR 256 - 123 184 193763 61 chain 24530 chr5 180915260 + 172912782 172913068 L1PA7 6471 - 6 290 107376 6 2 0 278 chain 19517 chr5 180915260 + 172917164 172917485 THE1C 375 - 44 375 128603 86 66 76 169 chain 39174 chr5 180915260 + 172966179 172966679 L1PA8 5853 + 5361 5853 70500 154 1 0 49 1 0 46 2 0 60 0 2 6 4 1 9 1 0 52 2 1 19 2 1 92 chain 28895 chr5 180915260 + 172973574 172973877 AluYa5 310 - 7 310 89474 303 chain 2438 chr5 180915260 + 172992242 172992314 MIRb 242 - 75 144 233881 4 1 0 16 30 28 21 chain 3029 chr5 180915260 + 172999181 172999213 Tigger4a 237 - 205 237 224420 32 chain 7887 chr5 180915260 + 173000745 173001039 MLT2B1 522 - 281 521 171760 20 6 5 20 0 1 18 72 75 40 83 26 35 chain 125278 chr5 180915260 + 173012436 173014016 THE1B-int 1605 - 5 1605 29304 169 7 5 276 0 3 373 0 1 203 4 0 12 4 0 101 0 25 230 0 1 201 chain 17536 chr5 180915260 + 173014054 173014275 THE1B 368 - 40 258 134169 136 2 0 23 1 0 59 chain 4502 chr5 180915260 + 173041549 173041637 MER5A 189 - 97 189 200754 16 6 7 34 11 14 21 chain 144284 chr5 180915260 + 173076472 173079365 L1PB1 5432 - 25 4008 25432 7 0 2 6 1 0 22 1 0 24 2 0 14 1 0 8 2 0 13 18 9 6 2 0 16 1 0 45 1 0 14 2 1 33 840 1924 200 0 3 44 12 9 21 0 8 144 1 0 266 1 5 69 1 2 66 1 8 134 13 17 563 1 0 5 6 9 266 chain 46164 chr5 180915260 + 173092794 173093494 L1PB 1623 + 828 1515 61882 82 0 6 381 38 11 42 4 5 4 1 0 35 0 18 34 1 0 4 5 4 30 1 0 4 3 0 13 5 1 13 chain 42483 chr5 180915260 + 173111540 173112114 LTR12F 595 + 0 594 66031 102 1 2 41 2 0 32 0 8 25 14 5 24 0 24 129 2 0 202 chain 18083 chr5 180915260 + 173150296 173150543 AluY 311 + 0 261 132638 44 12 25 63 10 11 118 chain 45582 chr5 180915260 + 173152688 173153296 L1PA16 3655 + 2020 2646 62427 52 0 2 138 7 8 19 1 0 49 6 0 114 0 22 222 chain 26779 chr5 180915260 + 173163033 173163319 AluYd8 298 - 12 298 97050 286 chain 8921 chr5 180915260 + 173177506 173177645 MLT1B 390 + 145 294 166025 68 19 29 52 chain 3520 chr5 180915260 + 173181410 173181463 MIR 256 - 108 158 215056 12 4 1 37 chain 4744 chr5 180915260 + 173197301 173197377 MADE1 96 + 7 96 197980 30 8 21 38 chain 21415 chr5 180915260 + 173215170 173215447 AluSx4 309 + 2 273 122462 232 10 4 35 chain 2865 chr5 180915260 + 173237551 173237683 HAL1-2a_MD 234 - 107 174 227604 16 2 0 3 23 0 15 6 0 9 41 7 17 chain 7339 chr5 180915260 + 173248216 173248315 MER5A 189 - 51 151 175163 82 4 5 13 chain 3194 chr5 180915260 + 173256416 173256452 MIR 256 + 56 92 221030 36 chain 23525 chr5 180915260 + 173265584 173265867 AluSg7 307 + 11 295 112989 120 0 1 163 chain 22788 chr5 180915260 + 173303894 173304175 AluSp 311 - 18 300 116641 187 5 6 89 chain 25817 chr5 180915260 + 173312677 173313029 THE1D 372 + 0 370 100801 53 13 23 31 0 1 20 0 4 58 3 6 174 chain 155536 chr5 180915260 + 173402335 173405210 L1PB1 5432 - 10 2653 23919 18 1 0 12 1 0 22 1 0 24 2 0 14 86 40 11 1 0 11 7 10 20 4 3 16 2 1 51 17 11 6 0 1 7 2 1 5 1 0 24 358 199 43 59 67 97 0 2 80 6 0 17 6 10 88 10 23 39 0 6 7 0 1 4 1 0 263 6 10 55 2 0 73 8 4 27 15 7 89 24 8 146 37 22 241 0 4 86 12 11 496 0 3 28 36 34 6 2 0 31 3 0 8 chain 7094 chr5 180915260 + 173402962 173403054 L1PA4 6152 + 6068 6151 176802 60 9 0 23 chain 46400 chr5 180915260 + 173420811 173421406 HSMAR1 1287 - 0 598 61688 379 6 9 210 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0 267 2 1 94 0 1 68 14 14 101 17 6 15 4 6 5 1 0 420 chain 29138 chr5 180915260 + 173607107 173607420 AluYb8 318 + 0 313 88374 313 chain 34404 chr5 180915260 + 173626436 173626926 L1PA16 3655 - 76 561 77049 17 4 5 275 10 5 68 17 16 99 chain 57497 chr5 180915260 + 173628638 173629442 L1PREC2 3366 - 512 1328 54243 4 1 0 46 6 5 43 9 7 352 1 15 132 1 0 5 0 1 29 5 6 152 4 5 14 chain 5526 chr5 180915260 + 173633977 173634063 L1PB3 3668 + 3482 3566 189779 13 1 0 8 1 0 11 0 2 12 3 1 37 chain 106885 chr5 180915260 + 173676419 173677618 L1PA4 6152 - 1 1206 35007 112 0 1 34 0 1 706 0 3 259 0 1 88 chain 10305 chr5 180915260 + 173680917 173681043 MER85 139 + 4 139 159112 85 0 10 17 1 0 23 chain 13355 chr5 180915260 + 173694348 173695652 L1PB1 5432 + 4101 5409 146862 22 0 22 25 1016 944 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 1 0 11 0 64 14 2 1 20 1 4 9 1 0 5 chain 33765 chr5 180915260 + 173705025 173705478 MLT2A1 477 + 0 464 77991 169 4 1 20 6 0 195 7 29 11 2 0 39 chain 232356 chr5 180915260 + 173723781 173726450 L1PA6 6164 - 8 2690 17181 840 0 4 126 4 0 13 1 0 101 0 1 454 0 11 894 0 1 189 0 1 47 chain 2825 chr5 180915260 + 173734691 173734722 MIRb 242 - 116 147 228296 31 chain 24406 chr5 180915260 + 173778172 173778561 THE1D 372 - 0 372 108045 148 1 0 32 24 26 71 1 0 9 0 4 8 3 0 17 23 5 52 chain 29680 chr5 180915260 + 173779034 173779386 L1PA6 6164 + 5809 6162 85901 199 0 1 153 chain 2904 chr5 180915260 + 173791042 173791156 HAL1-2a_MD 234 - 120 228 226988 7 3 0 12 21 15 17 3 0 6 8 2 13 6 18 18 chain 4739 chr5 180915260 + 173791623 173791676 MER5A 189 + 17 70 198033 53 chain 6305 chr5 180915260 + 173831678 173831756 MLT1B 390 + 295 373 182752 78 chain 480523 chr5 180915260 + 173863688 173870193 L1PA8A 6298 + 100 6290 7713 19 3 0 8 1 0 4 6 0 18 1 0 8 4 3 9 2 1 7 1 0 12 2 0 15 6 4 12 57 48 42 1 0 24 10 4 70 18 14 10 1 0 3 1 0 694 3 0 13 1 0 82 1 0 437 3 7 112 0 1 357 0 1 131 7 15 72 0 1 53 4 2 56 0 10 22 2 0 68 0 1 432 5 1 11 332 0 358 11 9 24 1 0 42 0 3 244 6 4 127 1 0 53 0 1 392 0 3 43 0 1 65 0 5 436 0 1 77 0 4 210 15 10 363 14 12 69 2 3 38 0 11 73 0 27 568 chain 504813 chr5 180915260 + 173892907 173899056 L1PA6 6164 + 0 6162 6554 451 19 0 78 14 8 32 1 0 233 0 13 438 0 1 20 0 1 934 3 5 44 0 2 208 0 1 93 0 1 539 0 10 73 1 0 55 0 4 30 0 1 31 1 0 7 15 15 195 1 2 245 0 1 591 0 4 1588 0 3 199 4 0 6 chain 27792 chr5 180915260 + 173899116 173899872 MER4-int 2692 - 1543 2243 93728 22 1 0 49 107 108 15 156 110 188 15 12 36 2 0 17 8 5 12 14 22 9 10 0 51 1 0 6 6 7 31 chain 24789 chr5 180915260 + 173900706 173901000 AluY 311 + 0 300 105945 8 0 6 109 1 0 9 0 1 167 chain 188122 chr5 180915260 + 173903228 173905294 L1PA3long 6157 - 0 2067 20227 12 0 3 237 2 0 1815 chain 127172 chr5 180915260 + 173925144 173926714 THE1A-int 1579 + 0 1574 28773 15 0 2 346 0 1 884 0 1 114 0 1 198 1 0 12 chain 12361 chr5 180915260 + 173934473 173934733 L1PB1 5432 - 14 251 150791 27 1 0 21 1 0 24 24 19 30 36 22 38 1 0 16 2 1 39 chain 5420 chr5 180915260 + 173964505 173964591 L1MB2 1706 + 117 202 190798 39 9 8 38 chain 87001 chr5 180915260 + 173966420 173967367 L1PA2 6032 + 5085 6032 40780 947 chain 4591 chr5 180915260 + 173971123 173971197 MADE1 96 + 6 95 199734 29 8 23 37 chain 28442 chr5 180915260 + 173974371 173974671 AluYb8 318 - 18 318 91413 300 chain 25781 chr5 180915260 + 174066273 174066573 AluSp 311 + 2 302 100957 300 chain 10310 chr5 180915260 + 174075517 174075923 LTR12 884 - 148 810 159086 80 153 278 32 5 138 27 77 75 32 chain 62988 chr5 180915260 + 174079348 174080251 L1MA2 4263 + 3225 4102 51450 339 11 11 9 2 0 7 1 0 71 1 0 52 0 3 6 0 2 81 3 0 51 2 0 99 11 9 37 24 10 46 7 0 16 0 1 27 chain 5947 chr5 180915260 + 174100111 174100344 L1PB1 5432 - 23 234 185710 5 1 0 11 7 6 17 1 0 16 92 75 39 11 10 9 2 1 22 chain 14767 chr5 180915260 + 174105593 174105787 MER107 203 - 0 203 142041 32 8 17 154 chain 3416 chr5 180915260 + 174112117 174112158 L1MB1 2102 + 1897 1937 216824 26 1 0 14 chain 23951 chr5 180915260 + 174128041 174128337 AluSp 311 - 18 301 110615 9 13 0 274 chain 7723 chr5 180915260 + 174181422 174181600 L1MB5 1630 - 83 285 172761 25 47 58 65 8 7 24 0 14 9 chain 56875 chr5 180915260 + 174188230 174188889 L1PA6 6164 - 6 668 54614 123 6 9 530 chain 20786 chr5 180915260 + 174224217 174224514 L1PA8 5853 + 5550 5847 124660 14 2 1 45 2 0 69 10 15 44 4 3 19 2 1 86 chain 6849 chr5 180915260 + 174230559 174230721 THE1C 375 + 0 161 178589 15 3 1 60 56 57 28 chain 4846 chr5 180915260 + 174232416 174232492 MSTD 398 - 29 104 196825 44 9 8 23 chain 20090 chr5 180915260 + 174234174 174234413 AluSp 311 - 63 302 126857 239 chain 10133 chr5 180915260 + 174263205 174263336 THE1D-int 1627 + 0 130 159936 10 4 3 117 chain 22367 chr5 180915260 + 174278443 174278707 AluSg7 307 + 10 275 118643 121 0 1 143 chain 24515 chr5 180915260 + 174284447 174284744 AluSp 311 - 7 311 107471 130 0 7 167 chain 477540 chr5 180915260 + 174285906 174292240 L1PA8A 6298 - 6 6197 7815 108 5 12 32 3 0 388 1 0 78 0 1 180 1 4 14 1 5 344 0 2 256 120 1 173 0 1 202 1 0 64 0 10 319 0 10 216 0 1 536 0 3 338 1 0 8 0 7 11 44 1 308 9 0 149 0 2 418 4 5 391 1 22 80 2 1 311 10 14 75 0 1 5 2 1 42 1 0 19 3 0 679 15 13 4 1 0 20 2 0 74 6 0 14 13 12 42 1 0 4 8 4 13 2 1 8 1 0 6 1 0 8 1 0 13 7 4 15 2 0 12 1 0 7 25 22 10 27 19 18 chain 8580 chr5 180915260 + 174287344 174287437 L1PA8A 6298 - 1337 1430 167846 93 chain 4076 chr5 180915260 + 174294513 174294560 MADE1 96 - 48 95 206249 47 chain 41001 chr5 180915260 + 174295507 174296022 LTR12_ 688 - 15 688 67902 39 0 133 355 3 28 118 chain 11975 chr5 180915260 + 174308145 174308369 LTR12C 1709 + 932 1078 152306 90 78 0 56 chain 137999 chr5 180915260 + 174312409 174313956 L1PA4 6152 + 4596 6152 26480 686 0 4 6 1 3 713 0 1 135 0 2 6 chain 10762 chr5 180915260 + 174318872 174318999 LTR8 732 + 597 724 157143 127 chain 16346 chr5 180915260 + 174319484 174320162 HUERS-P1-int 2401 + 154 661 137354 16 106 41 22 16 10 34 4 0 14 61 40 14 7 3 11 24 0 13 1 0 13 6 5 38 3 0 8 1 0 25 6 0 12 59 35 22 35 23 18 2 0 19 7 6 11 5 9 45 chain 7576 chr5 180915260 + 174328992 174329087 LTR12C 1709 + 773 1068 173694 45 0 200 50 chain 22843 chr5 180915260 + 174349490 174349787 AluY 311 + 0 294 116377 98 4 2 32 6 3 140 0 2 17 chain 22197 chr5 180915260 + 174365211 174365491 AluSp 311 + 4 285 119363 102 4 5 174 chain 11544 chr5 180915260 + 174370043 174370172 L1PA2 6032 + 5887 6016 154123 129 chain 40294 chr5 180915260 + 174385338 174385957 L1PA7 6471 + 5931 6469 68887 196 85 0 98 0 3 79 7 0 6 3 0 7 8 21 118 2 0 10 chain 17749 chr5 180915260 + 174401029 174401239 L1PA4 6152 - 6 217 133569 142 0 1 68 chain 22940 chr5 180915260 + 174401441 174401807 THE1B 368 - 0 368 115907 56 1 2 7 2 0 60 2 1 12 1 0 13 35 42 6 1 0 138 1 0 31 chain 7487 chr5 180915260 + 174420660 174420741 AluY 311 + 49 130 174222 81 chain 7680 chr5 180915260 + 174431164 174431258 THE1C-int 1605 + 1505 1599 173047 94 chain 36410 chr5 180915260 + 174445215 174445691 MER4A1 472 + 0 472 74359 95 0 1 234 9 0 68 6 7 23 0 3 41 chain 12385 chr5 180915260 + 174451286 174451436 L1PA8A 6298 + 5937 6087 150689 150 chain 26443 chr5 180915260 + 174452762 174453116 THE1B 368 + 4 368 98260 40 0 15 110 6 5 26 2 0 87 2 1 5 1 0 75 chain 14076 chr5 180915260 + 174455001 174455172 L1PA3long 6157 - 2 174 144305 137 3 5 12 1 0 18 chain 26201 chr5 180915260 + 174461460 174461757 AluYk4 311 + 8 303 99198 124 2 0 171 chain 3664 chr5 180915260 + 174461875 174462023 HAL1-2a_MD 234 - 160 228 212515 26 47 1 13 16 0 7 18 0 21 chain 10755 chr5 180915260 + 174504255 174504621 MER101-int 1169 + 651 985 157181 63 124 98 43 1 0 6 50 55 40 19 9 20 chain 42069 chr5 180915260 + 174512303 174512793 L1PA4 6152 - 0 496 66533 6 0 5 248 0 1 236 chain 47854 chr5 180915260 + 174512793 174513370 L1PA4 6152 + 5108 5665 60587 190 0 4 108 25 0 30 0 1 224 chain 19879 chr5 180915260 + 174523104 174523365 L1PA8A 6298 + 6028 6290 127553 143 0 1 4 17 16 45 0 1 52 chain 12424 chr5 180915260 + 174539497 174539640 L1PA3long 6157 + 6015 6157 150551 41 1 0 101 chain 196786 chr5 180915260 + 174560769 174565617 L1PA3long 6157 - 15 2189 19441 139 6 0 1011 2668 0 1024 chain 42868 chr5 180915260 + 174563810 174564284 L1PA3long 6157 - 383 857 65576 474 chain 33184 chr5 180915260 + 174565617 174566004 L1PA3long 6157 + 5771 6157 78931 229 7 0 140 0 6 11 chain 45438 chr5 180915260 + 174573410 174573989 MER11A 1151 + 6 674 62556 81 0 91 52 1 0 64 4 0 146 5 6 92 0 1 117 0 1 17 chain 5179 chr5 180915260 + 174595442 174595507 MSTB1 431 - 13 78 193232 65 chain 9096 chr5 180915260 + 174628633 174628754 Tigger1 2417 + 1895 2015 165092 83 1 0 37 chain 3834 chr5 180915260 + 174630170 174630233 L1MA9 1812 - 179 241 209853 14 5 3 37 0 1 7 chain 14162 chr5 180915260 + 174655833 174656153 MSTB1 431 - 0 328 144007 15 7 8 57 32 37 42 19 20 39 9 11 56 28 27 16 chain 12599 chr5 180915260 + 174684005 174684145 L1PA4 6152 - 0 145 149837 6 0 5 134 chain 8073 chr5 180915260 + 174684152 174684258 L1P 111 + 4 109 170626 98 1 0 7 chain 41774 chr5 180915260 + 174699970 174700441 L1PA3long 6157 + 5688 6157 66934 464 2 0 5 chain 10991 chr5 180915260 + 174740787 174740930 THE1D 372 + 226 372 156232 23 3 6 117 chain 3827 chr5 180915260 + 174756859 174756907 MIR 256 - 108 156 209966 48 chain 29874 chr5 180915260 + 174766771 174767369 L1PA15 4387 + 3783 4356 85191 29 2 0 14 5 1 12 3 1 48 16 14 5 1 0 20 6 5 188 20 19 46 1 0 22 67 63 40 8 6 13 5 0 27 chain 31446 chr5 180915260 + 174772745 174773134 L1PA7 6471 + 6076 6469 81740 17 3 8 212 0 1 145 2 0 10 chain 9561 chr5 180915260 + 174794915 174795020 L1PA3long 6157 + 6051 6156 162776 105 chain 38532 chr5 180915260 + 174816364 174816798 L1PA4 6152 - 11 445 71391 434 chain 48875 chr5 180915260 + 174822298 174822863 L1PA5 6144 - 0 565 59826 565 chain 552585 chr5 180915260 + 174824772 174830804 L1PA2 6032 + 0 6032 1122 66 0 1 189 1 0 3304 2 1 1695 1 0 61 0 2 713 chain 71103 chr5 180915260 + 174836370 174837208 L1PA6 6164 + 5320 6159 47885 499 0 1 183 8 0 7 1 9 140 chain 7728 chr5 180915260 + 174851267 174851368 L1PA17 2846 - 608 723 172729 59 1 15 41 chain 24876 chr5 180915260 + 174851401 174851797 L1PA17 2846 + 2301 2693 105482 39 14 27 11 1 0 125 4 0 10 5 0 78 2 0 9 1 0 32 1 0 17 4 3 6 2 0 35 chain 43456 chr5 180915260 + 174881089 174881606 MER41A 554 - 35 554 64862 91 1 2 414 0 1 11 chain 9307 chr5 180915260 + 174881991 174882100 AluY 311 + 11 127 164031 41 0 7 68 chain 22932 chr5 180915260 + 174883693 174883987 AluY 311 + 0 311 115950 11 1 0 96 1 10 14 3 0 119 0 12 49 chain 15694 chr5 180915260 + 174886870 174887090 L1PA8 5853 + 5638 5853 139290 40 2 1 14 5 3 44 2 1 19 1 0 93 chain 5639 chr5 180915260 + 174894854 174894925 MER63C 923 - 171 242 188673 71 chain 10378 chr5 180915260 + 174898065 174898196 L1PA6 6164 + 6031 6161 158794 69 2 1 60 chain 15700 chr5 180915260 + 174955276 174955483 MER2 342 + 135 340 139268 73 2 0 132 chain 29309 chr5 180915260 + 174962144 174962479 L1PA6 6164 - 4 340 87519 7 0 1 328 chain 24545 chr5 180915260 + 174991190 174991465 AluSp 311 - 26 301 107285 275 chain 25238 chr5 180915260 + 174994337 174994637 AluY 311 + 7 311 103547 125 0 1 54 0 1 87 0 2 34 chain 33944 chr5 180915260 + 175050230 175050771 LTR72 515 + 0 478 77701 193 24 25 171 61 0 14 9 6 69 chain 23010 chr5 180915260 + 175053177 175053489 THE1C 375 - 37 370 115576 188 0 20 45 10 11 69 chain 50054 chr5 180915260 + 175062996 175063758 L1PB4 2604 + 1738 2504 58979 31 1 0 66 14 21 38 5 4 47 1 0 89 40 36 5 0 3 7 0 2 118 2 0 26 0 3 152 8 6 112 chain 28514 chr5 180915260 + 175124184 175124483 AluYk12 309 + 0 299 91124 299 chain 3584 chr5 180915260 + 175128984 175129022 MADE1 96 - 1 39 213913 38 chain 277174 chr5 180915260 + 175147004 175150033 L1PA3long 6157 + 3119 6157 14798 809 0 1 1381 0 4 374 0 2 450 3 5 12 chain 21633 chr5 180915260 + 175152666 175152968 THE1B 368 - 62 368 121645 64 1 0 12 1 0 14 19 26 21 1 0 169 chain 25793 chr5 180915260 + 175187020 175187391 THE1C 375 + 0 375 100905 176 20 20 15 6 8 59 0 1 15 0 2 53 1 0 26 chain 118569 chr5 180915260 + 175187391 175189311 THE1C-int 1605 + 0 1599 31598 14 32 31 44 0 1 23 0 3 324 16 23 229 8 9 8 3 0 487 4 5 57 2 0 175 12 4 59 320 0 103 chain 27109 chr5 180915260 + 175189317 175189689 THE1C 375 + 0 375 95906 194 1 2 15 6 8 75 0 2 52 3 1 26 chain 34572 chr5 180915260 + 175194634 175195171 MSTA-int 1630 - 1095 1630 76788 38 8 1 176 49 49 166 16 20 71 2 3 11 chain 21740 chr5 180915260 + 175201180 175201529 MER41E 591 + 0 532 121243 49 0 182 165 54 55 81 chain 3279 chr5 180915260 + 175283374 175283414 MIRb 242 - 120 160 219374 40 chain 60270 chr5 180915260 + 175343740 175344476 L1PA8 5853 - 0 732 52700 93 1 0 19 2 1 52 2 1 5 1 0 74 2 0 46 1 0 40 0 3 398 chain 15545 chr5 180915260 + 175372736 175372931 L1MA4 2864 + 2501 2693 139744 175 3 0 17 chain 18143 chr5 180915260 + 175391398 175391635 AluSp 311 + 59 298 132484 51 4 5 85 0 1 97 chain 44664 chr5 180915260 + 175395768 175396321 MER41A 554 + 0 554 63418 104 0 1 261 0 1 69 1 0 118 chain 68478 chr5 180915260 + 175431224 175432257 HSMAR2 1300 - 315 1296 49055 83 32 3 50 1 3 53 1 0 269 0 6 4 1 0 175 5 0 112 0 6 11 30 8 139 15 14 4 1 0 14 4 0 4 2 0 23 chain 22809 chr5 180915260 + 175439430 175439735 AluSq10 312 + 10 300 116536 207 8 0 34 4 3 28 7 1 17 chain 535528 chr5 180915260 + 175478766 175484884 L1PA5 6144 + 0 6138 3509 182 5 0 6 0 5 673 0 2 166 0 2 13 0 1 189 1 0 1747 1 0 256 1 5 131 0 3 75 0 3 1695 3 0 16 0 1 68 1 0 55 1 0 227 0 2 149 0 2 325 0 7 132 chain 540243 chr5 180915260 + 175505194 175511321 L1PA4 6152 - 9 6152 2782 462 0 2 371 0 4 81 1 0 50 0 1 152 0 1 867 0 3 466 0 1 428 1 5 131 0 1 125 1 0 1838 0 2 117 0 1 81 2 0 953 chain 21271 chr5 180915260 + 175551635 175551940 AluY 311 + 9 298 122952 58 8 0 66 35 27 138 chain 22330 chr5 180915260 + 175556561 175556856 AluSp 311 - 8 301 118775 160 16 14 119 chain 39235 chr5 180915260 + 175558743 175559296 LTR61 567 + 0 567 70405 22 10 11 22 0 11 48 0 1 76 1 2 29 1 0 170 0 3 22 6 5 105 12 11 29 chain 7653 chr5 180915260 + 175564435 175564535 LTR15 485 + 389 485 173203 47 4 0 49 chain 3728 chr5 180915260 + 175575792 175575884 MER2 342 - 171 262 211504 29 37 36 26 chain 40121 chr5 180915260 + 175576782 175577223 L1PA4 6152 - 1 441 69153 216 1 0 224 chain 50949 chr5 180915260 + 175599261 175600228 LTR6A 649 + 0 649 58343 52 0 1 51 1 0 335 0 1 147 319 0 62 chain 36944 chr5 180915260 + 175624192 175624757 LTR19B 566 - 0 566 73595 15 0 4 23 10 13 11 0 9 14 42 41 135 9 0 13 0 1 120 7 0 31 0 4 20 3 0 112 chain 7615 chr5 180915260 + 175625194 175625277 L1PA7 6471 - 562 645 173444 83 chain 46789 chr5 180915260 + 175625277 175625833 L1PA7 6471 + 5905 6468 61380 127 1 0 285 0 7 85 0 1 58 chain 6889 chr5 180915260 + 175633930 175634016 MSTA 426 - 236 322 178280 86 chain 116644 chr5 180915260 + 175634734 175636323 MSTA-int 1630 - 54 1630 32248 62 1 0 250 0 1 276 48 19 187 1 11 47 1 0 97 0 1 4 1 0 95 0 12 224 13 5 118 1 2 19 0 3 30 4 3 110 chain 73129 chr5 180915260 + 175641502 175642363 SVA_A 1864 + 997 1857 46959 97 5 6 34 3 0 10 1 0 98 3 0 162 0 1 30 0 2 412 0 2 6 chain 34811 chr5 180915260 + 175642753 175643192 MER83 447 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277 0 4 409 0 1 761 chain 538220 chr5 180915260 + 175703449 175709587 L1PA2 6032 - 0 6032 3119 2819 25 2 1020 1 0 68 0 40 359 0 5 653 5 8 280 129 1 521 1 0 102 1 0 154 chain 167885 chr5 180915260 + 175709588 175714634 L1PA5 6144 + 1040 6135 6603 1716 0 2 127 1 0 221 5 1 89 0 78 235 36 0 803 1 0 29 0 4 277 1 0 520 0 5 146 1 5 667 1 0 170 chain 23777 chr5 180915260 + 175728110 175728447 THE1B 368 + 0 342 111609 113 0 1 55 1 0 29 0 3 5 5 9 17 1 0 7 11 10 93 chain 163694 chr5 180915260 + 175731243 175733934 SVA_F 1814 + 25 1814 22847 525 0 1 332 660 0 64 0 15 39 1 0 10 1 0 153 257 0 496 0 1 153 chain 32183 chr5 180915260 + 175732103 175732704 SVA_F 1814 + 888 1291 80556 2 172 0 8 1 0 32 41 0 16 0 16 48 0 1 263 1 0 17 chain 11451 chr5 180915260 + 175732113 175732277 SVA_F 1814 + 897 1080 89098 14 16 19 18 3 18 34 0 1 79 chain 213 chr5 180915260 + 175732732 175732760 SVA_F 1814 + 904 932 202187 28 chain 8014 chr5 180915260 + 175733048 175733132 SVA_F 1814 + 1005 1089 140856 84 chain 14604 chr5 180915260 + 175733132 175733285 SVA_F 1814 + 962 1115 129006 153 chain 5058 chr5 180915260 + 175734263 175734369 L1MB2 1706 + 1582 1689 194554 16 1 0 13 1 0 5 1 2 9 18 20 42 chain 2829 chr5 180915260 + 175745103 175745133 MER51A 677 - 448 478 228261 30 chain 23685 chr5 180915260 + 175759304 175759583 AluSp 311 - 23 302 112120 279 chain 41939 chr5 180915260 + 175845393 175846584 MER41A 554 + 0 554 66701 161 328 0 4 1 0 73 0 8 187 316 0 121 chain 165075 chr5 180915260 + 175851873 175854262 MER4-int 2692 - 443 2564 22644 229 0 1 325 1 14 36 310 0 191 1 0 140 2 3 62 0 1 136 6 13 302 1 14 64 6 4 166 5 14 406 chain 32078 chr5 180915260 + 175859151 175859620 MER4A1 472 - 1 472 80726 172 11 10 14 28 7 16 3 26 125 0 2 45 1 0 54 chain 143775 chr5 180915260 + 175860141 175861816 SVA_D 2077 + 53 2065 25519 589 6 5 13 0 3 102 40 0 126 17 59 10 0 1 25 0 2 14 0 101 116 0 226 276 0 3 341 chain 37740 chr5 180915260 + 175869916 175870433 L1PA8 5853 + 5326 5853 72499 109 0 11 18 0 4 96 1 0 46 2 0 78 8 7 45 2 1 9 0 1 9 1 0 93 chain 17564 chr5 180915260 + 175888695 175888945 L1P4 1494 - 84 339 134085 20 2 0 34 0 6 140 8 9 46 chain 24560 chr5 180915260 + 175889355 175889640 AluSc 308 + 11 296 107190 285 chain 22701 chr5 180915260 + 175902496 175902786 AluSq10 312 + 1 300 117072 92 0 9 72 10 10 116 chain 15431 chr5 180915260 + 175907770 175907967 L1PA7 6471 + 6278 6466 140100 19 0 1 15 8 0 146 2 0 7 chain 4711 chr5 180915260 + 175912218 175912394 MER77B 728 - 367 568 198389 20 29 37 23 8 7 20 49 67 27 chain 19444 chr5 180915260 + 175932489 175932871 L1PB1 5432 - 12 363 128840 16 1 0 13 1 0 21 1 0 24 2 0 13 9 6 19 23 12 16 1 0 43 1 0 16 2 1 17 5 6 27 18 12 12 1 0 12 1 0 20 1 0 11 1 0 34 chain 23846 chr5 180915260 + 175932925 175933220 AluY 311 + 16 309 111205 236 4 0 24 0 2 31 chain 7975 chr5 180915260 + 175983704 175983804 HY3 101 + 0 100 171198 100 chain 23043 chr5 180915260 + 176027116 176027398 AluSp 311 - 7 307 115432 81 6 0 102 0 23 62 0 1 31 chain 4530 chr5 180915260 + 176052298 176052352 MER5A 189 + 53 107 200448 54 chain 21897 chr5 180915260 + 176133866 176134145 THE1C 375 - 0 280 120640 25 1 0 75 0 2 178 chain 33431 chr5 180915260 + 176148104 176148589 LTR12C 1709 + 1154 1709 78514 61 44 13 238 0 101 11 0 2 41 16 14 74 chain 476 chr5 180915260 + 176199335 176199402 MLT2B4 540 - 96 157 182806 18 13 7 36 chain 29710 chr5 180915260 + 176199547 176200040 LTR12F 595 + 0 595 85796 100 68 13 29 5 97 47 0 64 38 2 0 22 9 12 173 chain 2423 chr5 180915260 + 176199653 176199712 LTR12F 595 + 158 267 220114 19 17 8 18 0 59 5 chain 1059 chr5 180915260 + 176200072 176200221 MLT2B4 540 - 372 523 182806 21 81 83 47 chain 5446 chr5 180915260 + 176248601 176248667 MER63A 208 - 66 132 190565 66 chain 11310 chr5 180915260 + 176268776 176268916 L1PB1 5432 + 4666 4808 155027 37 0 2 103 chain 25453 chr5 180915260 + 176351036 176351332 AluSq10 312 + 0 296 102443 296 chain 79383 chr5 180915260 + 176372381 176373278 MER11D 897 + 0 897 43871 218 0 2 64 1 0 496 1 0 117 chain 11536 chr5 180915260 + 176374366 176374494 L1PA5 6144 - 18 146 154161 128 chain 167229 chr5 180915260 + 176387669 176390168 SVA_F 1814 + 9 1814 22363 872 1 0 55 351 0 11 0 15 49 1 0 166 356 0 637 chain 11756 chr5 180915260 + 176388597 176388948 SVA_F 1814 + 937 1176 87844 10 127 15 214 chain 1691 chr5 180915260 + 176388607 176388638 SVA_F 1814 + 962 993 140391 31 chain 731 chr5 180915260 + 176388689 176388734 SVA_F 1814 + 607 652 167703 45 chain 16890 chr5 180915260 + 176389182 176389364 SVA_F 1814 + 1006 1187 135864 171 1 0 10 chain 3517 chr5 180915260 + 176389365 176389470 SVA_F 1814 + 1187 1291 87844 87 1 0 17 chain 5652 chr5 180915260 + 176389470 176389530 SVA_F 1814 + 1116 1177 139751 11 0 1 49 chain 151922 chr5 180915260 + 176410262 176412107 SVA_A 1864 + 19 1862 24348 27 0 10 503 0 2 64 3 0 26 25 22 60 3 0 28 0 2 121 2 1 167 0 1 5 3 0 86 1 0 24 3 0 35 7 5 38 7 8 29 7 8 571 chain 1934 chr5 180915260 + 176410885 176410910 SVA_A 1864 + 762 786 59047 1 1 0 23 chain 24857 chr5 180915260 + 176415680 176415981 AluSc 308 - 6 308 105585 281 0 1 20 chain 67131 chr5 180915260 + 176426709 176428331 L1MA2 4263 - 158 1159 49597 47 7 0 51 7 9 30 12 10 89 305 0 63 3 0 45 12 13 34 7 10 42 1 0 21 315 6 49 7 2 17 2 0 11 0 4 89 0 4 179 4 3 173 chain 6896 chr5 180915260 + 176438726 176438804 MER11A 1151 + 0 78 178221 78 chain 3618 chr5 180915260 + 176441355 176441496 MER68 562 - 418 562 213377 17 22 28 27 52 49 23 chain 57661 chr5 180915260 + 176483254 176483919 L1PA5 6144 + 5466 6137 54154 212 0 6 453 chain 7474 chr5 180915260 + 176529244 176529449 Tigger4b 360 - 24 221 174320 38 72 67 5 3 0 22 2 0 5 7 9 51 chain 24200 chr5 180915260 + 176565978 176566266 AluSq2 311 + 10 298 109216 288 chain 24874 chr5 180915260 + 176568014 176568314 AluSg7 307 - 5 301 105495 6 5 0 164 0 1 125 chain 24550 chr5 180915260 + 176572631 176572927 AluSp 311 + 0 300 107251 52 1 5 243 chain 24360 chr5 180915260 + 176586594 176586889 AluSp 311 - 10 311 108319 109 0 3 95 0 3 91 chain 24488 chr5 180915260 + 176594255 176594549 AluSp 311 + 0 295 107610 110 3 4 181 chain 73714 chr5 180915260 + 176595761 176596868 HSMAR1 1287 - 129 1287 46666 36 14 15 56 7 6 114 21 24 86 10 19 23 0 1 54 0 1 21 15 14 76 4 43 5 3 0 120 6 5 62 8 10 215 0 3 22 1 0 16 1 0 111 chain 24556 chr5 180915260 + 176600015 176600315 AluY 311 + 1 305 107217 20 0 2 84 1 2 23 0 1 172 chain 4285 chr5 180915260 + 176641609 176641665 L1MB1 2102 - 119 173 203405 41 2 0 13 chain 26493 chr5 180915260 + 176684974 176685280 AluSp 311 - 5 311 98072 306 chain 16478 chr5 180915260 + 176695302 176695485 L1PA4 6152 + 5965 6151 136985 136 0 3 47 chain 11324 chr5 180915260 + 176700227 176700384 MER30B 195 - 14 166 154988 101 11 6 45 chain 3712 chr5 180915260 + 176701423 176701483 MADE1 96 + 42 96 211753 7 8 0 19 0 2 26 chain 25057 chr5 180915260 + 176743791 176744089 AluSq10 312 - 12 306 104521 56 4 0 238 chain 19034 chr5 180915260 + 176753090 176753414 LTR24C 604 + 4 336 130022 146 0 1 31 42 45 32 15 19 19 0 1 14 1 0 24 chain 27278 chr5 180915260 + 176768055 176768366 AluSp 311 - 2 311 95343 28 2 0 281 chain 23602 chr5 180915260 + 176771282 176771580 AluSc5 308 - 7 308 112575 103 0 4 40 2 0 5 0 2 18 2 1 128 chain 29177 chr5 180915260 + 176888092 176888398 AluYa5 310 - 4 310 88163 306 chain 13283 chr5 180915260 + 176926012 176926625 MER1B 344 + 0 338 147157 14 1 0 5 3 22 45 19 43 6 3 0 87 377 63 53 chain 5181 chr5 180915260 + 176949647 176949705 MER2 342 - 128 186 193217 58 chain 27676 chr5 180915260 + 176974287 176974584 AluYg6 310 - 14 310 94131 178 1 0 118 chain 77960 chr5 180915260 + 176986468 176987384 SVA_D 2077 - 0 1394 44541 535 0 225 232 0 51 76 5 127 26 0 80 42 chain 74276 chr5 180915260 + 176988137 176989134 LTR13 1007 + 0 1007 46372 73 2 0 246 5 7 54 9 10 7 0 1 230 2 1 56 1 2 12 33 38 171 0 5 62 3 1 31 chain 50000 chr5 180915260 + 177002049 177002616 LTR10C 591 - 21 591 59016 60 0 2 397 0 1 110 chain 38826 chr5 180915260 + 177012758 177013476 L1PB1 5432 - 52 719 70980 10 1 0 10 6 0 14 60 44 6 3 0 13 7 6 39 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10 229 0 1 301 1 2 76 chain 3457 chr5 180915260 + 177099851 177099920 MER30 238 - 0 78 216040 27 18 0 7 0 27 17 chain 140273 chr5 180915260 + 177115054 177116724 LTR12C 1709 + 0 1709 26104 437 0 1 265 7 48 36 7 8 42 1 0 275 1 0 4 4 2 106 0 4 139 4 0 342 chain 34811 chr5 180915260 + 177121439 177121878 MER83 447 - 7 447 76455 222 0 1 217 chain 92729 chr5 180915260 + 177122268 177123442 SVA_A 1864 - 7 1278 38737 6 0 2 417 0 2 25 0 1 113 7 8 38 2 0 77 1 71 39 3 0 71 2 0 38 3 0 39 3 0 25 8 7 36 8 6 73 1 0 34 1 2 79 0 37 25 chain 95248 chr5 180915260 + 177129208 177130544 MSTA-int 1630 + 254 1576 38020 31 13 5 224 0 12 95 1 0 5 4 5 20 7 7 65 1 0 47 1 11 85 16 18 84 48 19 276 0 1 252 1 0 60 chain 17825 chr5 180915260 + 177131580 177132538 MSTA 426 + 57 415 133317 40 6 7 86 670 61 49 18 26 89 chain 530880 chr5 180915260 + 177180851 177186956 L1PA4 6152 + 0 6143 4097 956 2 0 83 0 1 117 0 2 1833 1 0 126 0 1 130 1 5 135 0 3 71 0 3 685 0 3 867 0 1 150 0 1 50 1 0 55 0 4 22 0 4 220 0 2 152 0 2 311 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chain 38486 chr5 180915260 + 177368237 177368800 LTR19B 566 + 0 566 71460 106 3 0 26 0 4 31 7 0 120 0 1 13 7 0 135 35 34 21 0 9 11 1 4 32 0 4 15 chain 9171 chr5 180915260 + 177381252 177381364 L1PA8 5853 + 5741 5852 164696 19 1 0 92 chain 39848 chr5 180915260 + 177400937 177401382 L1PA5 6144 - 6 453 69537 120 0 2 325 chain 28523 chr5 180915260 + 177401934 177402288 L1PREC2 3366 - 1278 1635 91089 50 0 2 271 0 1 33 chain 23393 chr5 180915260 + 177429349 177429616 AluSp 311 - 43 311 113682 85 0 1 182 chain 536472 chr5 180915260 + 177450819 177456949 L1PA4 6152 - 9 6152 3378 462 0 2 371 0 4 85 1 0 46 0 1 26 0 1 125 0 1 867 0 3 460 3 0 435 1 5 131 0 1 125 1 0 1838 0 2 117 0 1 81 2 0 953 chain 81068 chr5 180915260 + 177482323 177484016 LTR5B 1012 - 0 1012 43155 177 0 2 55 0 15 8 712 0 609 1 15 131 chain 9140 chr5 180915260 + 177492352 177492518 MER44A 345 + 111 300 164859 35 10 32 37 0 1 46 14 15 14 1 0 9 chain 21901 chr5 180915260 + 177506328 177506587 AluY 311 + 27 287 120612 171 1 2 87 chain 24722 chr5 180915260 + 177520915 177521191 AluSp 311 + 11 290 106309 80 0 3 196 chain 28841 chr5 180915260 + 177528566 177528872 AluYa5 310 - 4 310 89713 306 chain 22856 chr5 180915260 + 177529241 177529541 AluY 311 + 3 299 116301 11 4 0 118 0 1 128 12 11 27 chain 32923 chr5 180915260 + 177530785 177531216 LTR2 463 - 12 463 79332 76 12 13 73 5 23 106 1 0 4 0 1 8 0 1 146 chain 10018 chr5 180915260 + 177582422 177582540 AluY 311 + 0 124 160489 13 0 7 89 1 0 15 chain 9535 chr5 180915260 + 177596425 177596558 MSTA 426 + 236 389 162908 56 5 25 72 chain 25951 chr5 180915260 + 177600253 177600557 AluSq10 312 - 7 311 100208 304 chain 24833 chr5 180915260 + 177601841 177602137 AluSp 311 - 4 300 105707 296 chain 3093 chr5 180915260 + 177618309 177618342 MER4D 903 - 691 724 223050 33 chain 28139 chr5 180915260 + 177796497 177796850 THE1B 368 + 2 368 92509 43 1 17 130 3 0 176 chain 9182 chr5 180915260 + 177797305 177797462 L1MA8 2339 + 1925 2079 164646 30 2 0 23 33 32 69 chain 9032 chr5 180915260 + 177820183 177820511 L1MB3 1562 + 1237 1552 165429 48 170 148 6 2 0 29 1 0 7 1 14 34 1 0 29 chain 27962 chr5 180915260 + 177846649 177847009 MER57A1 433 + 0 361 93132 280 4 5 76 chain 3922 chr5 180915260 + 177875866 177875910 MLT1A1 405 + 295 339 208535 44 chain 3075 chr5 180915260 + 177893941 177893977 MIRb 242 + 104 140 223429 36 chain 19954 chr5 180915260 + 177908792 177909033 L1PA5 6144 + 5902 6144 127289 70 1 2 170 chain 24609 chr5 180915260 + 177936218 177936521 AluSg7 307 - 8 307 106944 19 3 0 154 1 0 126 chain 12128 chr5 180915260 + 177937543 177937678 L1PA3long 6157 + 6022 6157 151702 135 chain 80501 chr5 180915260 + 177944893 177945797 SVA_F 1814 - 0 1479 43390 614 1 99 81 0 400 44 0 40 46 0 37 118 chain 7061 chr5 180915260 + 177961096 177961189 MLT1A0 366 - 15 115 177028 42 2 9 49 chain 375 chr5 180915260 + 177989037 177989088 LTR12F 595 - 0 51 180147 51 chain 21837 chr5 180915260 + 177989308 177989582 AluY 311 + 35 311 120863 91 0 1 44 7 6 91 0 2 41 chain 794 chr5 180915260 + 177989833 177989941 LTR12F 595 - 426 502 180147 23 2 0 18 25 0 24 6 1 10 chain 4013 chr5 180915260 + 178032853 178032955 MER58C 217 - 4 173 207199 11 0 3 36 32 29 13 0 67 10 chain 3682 chr5 180915260 + 178042597 178042640 Charlie2b 853 + 657 700 212203 43 chain 19252 chr5 180915260 + 178066410 178066696 AluSx 319 + 22 308 129371 152 1 33 11 32 0 90 chain 3935 chr5 180915260 + 178088192 178088241 MADE1 96 + 46 96 208335 23 0 1 26 chain 136652 chr5 180915260 + 178092466 178093990 L1PA4 6152 + 4609 6136 26701 278 0 1 1143 6 8 97 chain 28070 chr5 180915260 + 178104451 178104943 MER57A1 433 + 0 433 92755 199 60 1 23 61 59 74 0 1 46 0 1 29 chain 3262 chr5 180915260 + 178116338 178116419 L1MA9 1812 - 168 245 219747 20 16 14 24 6 4 15 chain 25501 chr5 180915260 + 178124183 178124459 AluY 311 + 10 287 102219 122 0 1 154 chain 5013 chr5 180915260 + 178130572 178130653 L1MA4 2864 + 2723 2796 194984 14 6 0 28 3 1 30 chain 23316 chr5 180915260 + 178132685 178132974 AluY 311 + 10 299 114121 22 1 0 99 1 2 166 chain 22836 chr5 180915260 + 178158532 178158816 AluSg7 307 + 8 297 116417 58 4 7 58 0 1 72 0 1 92 chain 119048 chr5 180915260 + 178162518 178164547 L1PA14 3548 - 95 1845 31390 38 1 0 19 5 3 14 14 12 24 16 11 33 0 1 27 0 2 48 1 0 46 35 31 7 0 6 17 4 0 109 2 0 7 6 4 41 2 0 14 3 1 17 4 1 23 3 4 103 4 3 99 1 5 22 4 3 10 0 2 109 1 0 50 0 6 278 238 8 82 0 8 63 41 0 240 14 9 90 chain 35717 chr5 180915260 + 178171238 178171776 L1PA16 3655 + 3001 3537 75249 64 23 27 29 11 6 76 1 0 70 0 1 16 2 0 93 2 0 5 0 2 25 8 9 113 chain 20445 chr5 180915260 + 178173752 178174006 L1PA5 6144 - 5 263 125769 13 1 0 138 2 7 100 chain 45688 chr5 180915260 + 178174803 178175315 L1PA4 6152 + 5647 6152 62326 350 7 0 155 chain 9360 chr5 180915260 + 178185782 178185897 MER41B 635 - 2 117 163752 115 chain 15498 chr5 180915260 + 178206040 178206351 LTR22 571 + 240 571 139907 49 34 64 84 60 49 37 0 1 47 chain 74461 chr5 180915260 + 178225076 178226041 LTR5_Hs 974 + 0 974 46295 452 0 4 170 13 12 18 0 1 17 3 5 31 0 2 64 8 8 117 0 2 8 1 0 63 chain 144037 chr5 180915260 + 178229125 178230732 L1PA4 6152 - 0 1637 25470 20 0 14 50 1 9 157 0 4 740 0 5 77 1 0 561 chain 26641 chr5 180915260 + 178251870 178252167 AluY 311 + 4 301 97504 297 chain 8117 chr5 180915260 + 178277873 178278052 MER65A 464 - 0 187 170401 38 59 67 51 0 1 17 1 0 13 chain 7023 chr5 180915260 + 178305544 178305631 MER50B 698 + 482 568 177305 59 1 0 27 chain 12184 chr5 180915260 + 178311715 178311861 U1 164 + 0 145 151477 21 1 0 124 chain 23920 chr5 180915260 + 178351102 178351393 AluY 311 + 10 302 110806 112 4 5 175 chain 23681 chr5 180915260 + 178387935 178388219 AluSc 308 - 14 298 112144 284 chain 24147 chr5 180915260 + 178393160 178393457 AluY 311 + 11 305 109485 19 6 2 100 0 1 172 chain 25342 chr5 180915260 + 178412424 178412723 AluY 311 + 2 302 103001 130 0 1 169 chain 27427 chr5 180915260 + 178437843 178438599 MER4A1 472 + 0 472 94889 182 389 93 113 5 17 67 chain 27501 chr5 180915260 + 178447389 178447699 AluYf4 310 - 0 309 94648 181 1 0 128 chain 43198 chr5 180915260 + 178467599 178468103 MER9a2 513 + 0 513 65174 58 0 4 319 0 4 44 0 1 83 chain 19705 chr5 180915260 + 178470431 178470670 LTR19B 566 - 328 566 128079 70 1 0 168 chain 38047 chr5 180915260 + 178475516 178476007 LTR2B 499 - 0 499 72064 55 2 1 320 0 12 96 3 0 15 chain 138173 chr5 180915260 + 178476039 178482099 HERVE_a-int 7009 - 19 5844 26461 23 33 25 12 3 0 4 0 1 34 2 0 24 1 0 13 3 1 6 1 0 30 1 0 27 3 1 54 5 2 17 11 7 9 2 1 53 1 0 8 1 0 26 1 0 7 1 0 46 1 0 14 6 5 32 6 5 7 2 0 5 1 0 16 12 10 32 1 0 38 7 6 37 0 1 95 5 3 77 7 6 11 1 0 16 2 0 60 1 0 5 1 0 12 1 0 87 3497 3346 62 1 0 168 1 0 38 1 0 11 1 0 144 1 0 11 7 5 17 13 8 29 6 4 25 3 2 94 3 2 9 8 7 17 1 0 17 2 1 22 1 0 38 6 5 6 0 1 27 0 9 36 1 0 62 1 0 12 1 0 24 0 4 30 8 7 5 1 0 5 0 1 12 24 21 10 1 0 11 2 1 21 6 5 12 1 0 58 0 4 54 1 0 16 2 1 22 1 0 56 6 4 56 1 0 3 1 0 5 1 0 10 20 17 17 1 0 16 53 45 14 1 0 12 chain 14431 chr5 180915260 + 178480377 178480576 HERVE_a-int 7009 + 1687 1896 143111 32 1 0 25 1 0 14 1 0 57 0 3 36 0 9 27 0 1 5 chain 9355 chr5 180915260 + 178486326 178486469 L1MA4A 3247 + 2981 3132 163776 100 9 18 8 1 0 25 chain 22157 chr5 180915260 + 178494585 178494856 AluSx 319 + 20 292 119556 45 1 0 190 1 3 34 chain 29471 chr5 180915260 + 178525821 178526142 AluYb8 318 + 0 318 86749 311 3 0 7 chain 546741 chr5 180915260 + 178528070 178534074 L1PA3long 6157 + 1 6149 1859 99 0 1 51 0 1 264 0 1 363 0 128 920 2 1 807 0 3 2239 0 4 427 0 4 447 0 3 385 chain 36730 chr5 180915260 + 178616182 178617150 LTR7B 505 - 0 505 73913 161 314 0 54 36 1 37 35 17 6 3 0 34 88 0 10 1 0 10 4 0 175 chain 7893 chr5 180915260 + 178709803 178709901 AluY 311 + 10 107 171704 10 2 1 86 chain 23233 chr5 180915260 + 178726250 178726524 AluY 311 + 2 277 114526 124 0 1 150 chain 29426 chr5 180915260 + 178756845 178757152 AluYb8 318 + 0 307 86952 307 chain 5927 chr5 180915260 + 178816610 178816775 MER20 218 + 49 215 185917 19 74 76 12 1 0 59 chain 26287 chr5 180915260 + 178824549 178824895 THE1A 353 + 6 350 98873 103 2 1 76 1 0 164 chain 20349 chr5 180915260 + 178845383 178845645 AluY 311 + 21 284 126068 108 16 14 7 0 3 131 chain 24992 chr5 180915260 + 178860796 178861097 AluSg7 307 - 5 306 104846 28 0 1 121 0 3 7 3 0 10 1 0 131 chain 6264 chr5 180915260 + 178919087 178919158 U4 144 - 73 144 183054 71 chain 3582 chr5 180915260 + 178921636 178921678 MADE1 96 - 54 96 213953 42 chain 24514 chr5 180915260 + 178934599 178934904 AluSq10 312 + 9 312 107478 102 6 4 197 chain 24910 chr5 180915260 + 178937481 178937789 AluY 311 + 0 305 105279 53 9 5 68 0 1 178 chain 75458 chr5 180915260 + 178940963 178941931 LTR5_Hs 974 - 0 974 45791 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 17038 chr5 180915260 + 178947235 178947456 AluSp 311 + 9 302 135498 62 7 79 152 chain 2944 chr5 180915260 + 178959308 178959341 MER2 342 - 163 196 226233 33 chain 21742 chr5 180915260 + 178973358 178973949 Tigger1 2417 - 1696 2020 121238 76 295 25 61 0 3 159 chain 4605 chr5 180915260 + 178980045 178980104 MER45C 884 + 96 158 199575 11 0 3 48 chain 26767 chr5 180915260 + 178987438 178987755 AluY 311 + 0 311 97098 118 7 0 14 0 1 178 chain 6024 chr5 180915260 + 179022198 179022262 AluSz 310 + 0 64 185028 64 chain 6840 chr5 180915260 + 179022262 179022334 AluYa5 310 + 64 136 178655 72 chain 27966 chr5 180915260 + 179039239 179039543 AluYa5 310 + 0 301 93122 132 3 0 169 chain 21579 chr5 180915260 + 179053449 179053703 AluSg 306 + 13 267 121849 254 chain 23823 chr5 180915260 + 179059852 179060147 AluSc 308 - 4 298 111345 178 1 0 116 chain 22555 chr5 180915260 + 179067099 179067383 AluSg 306 + 20 291 117782 259 0 1 4 14 0 7 chain 12508 chr5 180915260 + 179075065 179075209 AluY 311 + 25 170 150214 107 0 1 37 chain 78771 chr5 180915260 + 179076822 179077727 SVA_C 1631 - 0 1344 44163 601 4 0 28 1 0 18 0 214 35 0 230 218 chain 24253 chr5 180915260 + 179089949 179090249 AluSp 311 - 10 300 108923 44 10 0 246 chain 25310 chr5 180915260 + 179122649 179122927 AluYd8 298 - 9 287 103174 278 chain 24773 chr5 180915260 + 179136127 179136428 AluY 311 + 0 296 106037 30 7 0 56 0 1 45 0 1 163 chain 12896 chr5 180915260 + 179162037 179162184 L1PA3long 6157 + 6009 6156 148648 147 chain 23937 chr5 180915260 + 179173379 179173663 AluSp 311 - 16 301 110707 18 0 2 69 1 0 196 chain 10237 chr5 180915260 + 179174390 179174975 L1MB2 1706 + 1266 1557 159437 17 37 44 11 1 2 72 320 9 12 4 8 41 41 46 29 chain 4149 chr5 180915260 + 179183068 179183114 MER30 238 + 190 236 205252 46 chain 11625 chr5 180915260 + 179210480 179210681 Tigger2b_Pri 1066 + 56 255 153796 29 5 4 23 35 34 109 chain 13973 chr5 180915260 + 179216401 179216589 THE1B 368 + 169 368 144673 23 3 0 80 1 16 25 1 0 55 chain 24111 chr5 180915260 + 179217642 179217943 AluSp 311 - 3 301 109688 26 4 0 221 8 9 42 chain 66420 chr5 180915260 + 179237135 179237894 L1PA5 6144 - 15 777 49908 267 0 3 492 chain 4663 chr5 180915260 + 179255109 179255168 MER41A 554 - 88 147 198928 59 chain 21124 chr5 180915260 + 179257584 179257844 AluSg7 307 - 33 296 123477 8 0 2 137 1 2 114 chain 113777 chr5 180915260 + 179261430 179262696 SVA_D 2077 - 16 2071 33154 322 0 10 254 0 624 11 0 40 153 0 80 507 3 38 16 chain 23873 chr5 180915260 + 179284166 179284479 AluSc 308 + 0 292 111067 23 14 0 248 7 0 21 chain 26113 chr5 180915260 + 179284731 179285027 AluSp 311 + 1 298 99561 164 0 1 132 chain 6881 chr5 180915260 + 179303673 179303786 L1MB3 1562 + 939 1053 178339 32 1 0 38 12 13 7 0 1 23 chain 28187 chr5 180915260 + 179384878 179385176 AluYa5 310 - 12 310 92350 298 chain 155723 chr5 180915260 + 179419735 179421488 L1PA5 6144 - 9 1778 23889 492 0 1 348 1 0 611 0 15 46 1 0 192 0 2 62 chain 11939 chr5 180915260 + 179445324 179445601 THE1D 372 - 57 370 152448 77 3 19 26 28 27 27 0 1 11 70 90 35 chain 9226 chr5 180915260 + 179472676 179472785 LTR12E 1234 - 484 593 164422 109 chain 25692 chr5 180915260 + 179487806 179488093 AluYf5 307 + 19 305 101324 194 1 0 92 chain 9484 chr5 180915260 + 179489365 179489509 MLT1A0 366 - 213 359 163147 61 1 2 34 9 10 39 chain 48193 chr5 180915260 + 179507391 179508062 LTR12_ 688 - 0 669 60325 331 31 29 13 7 8 87 0 1 4 7 5 191 chain 3243 chr5 180915260 + 179517030 179517115 MER96B 391 + 224 311 220173 37 35 37 13 chain 8866 chr5 180915260 + 179535509 179535726 L1MDa 1598 - 875 1087 166301 56 63 61 26 20 17 52 chain 185880 chr5 180915260 + 179577661 179579719 L1PA4 6152 + 4084 6152 20423 583 2 1 1012 1 7 454 0 5 6 chain 24532 chr5 180915260 + 179584350 179584640 AluSp 311 + 11 295 107363 109 6 0 175 chain 27783 chr5 180915260 + 179608921 179609234 AluYg6 310 + 0 310 93759 131 3 0 179 chain 42986 chr5 180915260 + 179609234 179609825 LTR12 884 - 187 884 65429 29 2 0 17 10 13 157 0 1 103 2 0 17 6 74 194 0 39 28 1 0 25 chain 7304 chr5 180915260 + 179676711 179676834 MER33 330 - 87 207 175413 25 5 0 10 0 1 51 9 10 23 chain 21936 chr5 180915260 + 179749758 179750026 AluY 311 + 4 274 120472 128 0 1 42 1 2 97 chain 23216 chr5 180915260 + 179768919 179769262 THE1B 368 + 0 368 114618 68 2 18 83 1 0 29 35 45 125 chain 4892 chr5 180915260 + 179792205 179792294 Tigger1 2417 + 2202 2293 196357 25 22 24 42 chain 17300 chr5 180915260 + 179830458 179830905 L1PBa 3878 - 3199 3425 134786 89 220 0 66 1 0 71 chain 20681 chr5 180915260 + 179831048 179831340 AluSz6 309 + 11 298 125032 37 9 6 69 22 20 155 chain 39410 chr5 180915260 + 179842694 179843157 LTR7Y 441 - 9 441 70147 267 31 0 165 chain 252888 chr5 180915260 + 179843912 179847070 HERVH-int 3825 - 705 3825 16088 379 0 1 543 0 1 10 0 1 469 4 31 394 1 0 4 0 1 63 15 0 442 0 3 13 8 10 56 2 1 22 7 45 13 1 0 14 28 0 5 1 0 19 1 0 10 1 0 38 66 0 373 0 3 156 chain 41279 chr5 180915260 + 179847070 179847511 LTR7Y 441 - 0 441 67560 441 chain 25729 chr5 180915260 + 179848310 179848731 LTR7B 505 - 8 505 101167 43 14 13 33 1 3 18 0 1 8 1 2 11 1 0 54 1 89 27 44 20 60 0 10 105 chain 242722 chr5 180915260 + 179872690 179875582 L1PA7 6471 - 1 2908 16627 18 0 1 142 1 2 94 0 6 70 1 0 297 0 1 137 0 2 75 1 2 674 1 0 277 0 4 527 0 4 51 0 1 71 1 0 4 7 6 114 3 0 283 12 13 31 chain 6997 chr5 180915260 + 179876752 179876830 L1PA5 6144 + 6060 6138 177480 78 chain 41750 chr5 180915260 + 179879995 179880592 LTR12F 595 + 0 595 66961 103 0 1 39 3 1 33 0 8 25 14 5 173 3 0 22 3 4 13 4 5 59 4 5 99 chain 3704 chr5 180915260 + 179883112 179883166 MER51A 677 + 178 223 211892 22 9 0 23 chain 125327 chr5 180915260 + 179957566 179958997 SVA_B 1603 - 0 1603 29295 601 8 86 12 0 69 765 20 31 12 0 14 13 chain 23378 chr5 180915260 + 179979369 179979673 AluY 311 + 12 307 113767 22 2 0 99 14 10 154 3 0 10 chain 2369 chr5 180915260 + 179983218 179983383 L1MA7 2200 + 1951 2087 234522 26 119 90 20 chain 7888 chr5 180915260 + 180005760 180005860 Tigger3a 397 - 138 238 171748 100 chain 26008 chr5 180915260 + 180030619 180030917 AluY 311 + 0 296 99981 41 3 0 89 1 2 164 chain 77079 chr5 180915260 + 180034277 180035565 LTR13A 966 + 0 966 44927 77 333 0 51 0 1 28 0 3 224 1 0 97 0 1 17 0 5 166 2 0 29 0 2 180 0 2 83 chain 17388 chr5 180915260 + 180082017 180082221 MLT2A2 560 + 0 206 134547 69 0 2 135 chain 25163 chr5 180915260 + 180082235 180082527 AluSp 311 - 19 311 103944 292 chain 13088 chr5 180915260 + 180086614 180086829 L1PB 1623 + 1236 1451 147889 36 0 3 27 1 0 9 2 0 38 2 0 37 8 11 49 1 0 5 chain 4191 chr5 180915260 + 180090997 180091095 L1M4c 1769 - 1457 1539 204668 42 34 18 22 chain 42354 chr5 180915260 + 180106522 180107087 LTR19B 566 + 0 566 66212 106 8 5 23 9 0 298 0 2 16 5 4 37 0 9 12 9 12 42 chain 33883 chr5 180915260 + 180107583 180108027 LTR13 1007 - 563 1007 77802 58 4 5 30 4 5 263 0 3 6 6 1 73 chain 79994 chr5 180915260 + 180127054 180128010 MER11C 1089 + 0 1089 43599 6 0 1 592 0 1 76 0 128 61 0 1 36 0 2 23 0 1 157 1 0 4 chain 111581 chr5 180915260 + 180129186 180130899 L1PA7 6471 + 5070 6466 33784 551 2 0 63 362 43 412 0 1 157 0 1 4 8 7 15 1 0 5 0 2 125 0 2 8 chain 536057 chr5 180915260 + 180183692 180189812 L1PA4 6152 - 15 6152 3439 239 1 0 409 2 1 1136 0 4 409 0 1 430 0 1 68 0 1 672 0 1 58 1 6 763 0 2 212 9 8 986 1 0 387 1 2 104 0 5 232 chain 31839 chr5 180915260 + 180194290 180194767 L1MA2 4263 - 158 621 81107 47 7 0 93 2 1 6 1 0 41 2 1 9 6 6 93 23 20 126 1 0 20 chain 97942 chr5 180915260 + 180197676 180198773 SVA_D 2077 - 0 2017 37295 638 0 1 19 0 505 6 2 0 33 0 389 355 0 27 44 chain 27295 chr5 180915260 + 180205959 180206592 MER4A 717 + 0 709 95288 49 0 1 72 9 10 33 15 16 8 1 0 143 0 1 6 10 0 18 207 289 26 1 2 35 chain 34736 chr5 180915260 + 180208870 180209332 LTR2 463 + 0 463 76564 142 1 0 4 11 12 202 14 15 88 chain 73732 chr5 180915260 + 180254268 180255232 LTR5_Hs 974 + 0 974 46655 97 0 3 185 0 1 181 0 1 74 8 9 105 1 0 71 0 2 7 3 9 7 8 0 67 8 15 19 20 18 103 chain 79723 chr5 180915260 + 180255430 180256593 MER11A 1151 + 0 1151 43722 85 0 91 54 1 0 64 4 0 32 0 2 115 0 1 238 6 9 54 0 4 59 51 1 12 1 0 3 15 0 11 8 1 11 1 0 3 15 0 10 26 0 60 1 2 142 0 6 81 chain 1772 chr5 180915260 + 180256161 180256193 MER11A 1151 + 859 890 205196 29 1 0 2 chain 5372 chr5 180915260 + 180260125 180260186 MLT1A0 366 + 68 129 191290 61 chain 21677 chr5 180915260 + 180260208 180260497 AluY 311 + 10 301 121477 112 0 1 9 16 17 152 chain 40073 chr5 180915260 + 180294621 180295124 LTR2C 499 + 8 499 69220 112 0 8 44 41 20 248 0 1 58 chain 29114 chr5 180915260 + 180305092 180305472 THE1C 375 - 0 375 88485 25 1 0 178 1 0 41 9 6 125 chain 509599 chr5 180915260 + 180307406 180313552 L1PA6 6164 - 2 6164 6198 6 3 0 134 8 6 12 0 1 680 1 8 1219 0 1 398 0 1 273 0 5 194 2 1 33 0 1 276 1 6 152 2 1 424 1 0 318 6 0 982 0 1 146 1 0 63 1 18 233 0 6 4 7 0 110 8 0 37 61 47 7 0 14 150 0 1 193 chain 39394 chr5 180915260 + 180315925 180316397 L1P2 5180 + 1634 2108 70173 53 3 5 416 chain 528171 chr5 180915260 + 180316409 180322837 L1PA7 6471 + 1 6461 4385 65 5 13 241 0 1 76 7 6 257 0 2 304 0 1 314 1 2 285 5 6 232 1 0 4 0 1 37 1 0 4 0 1 348 1 2 464 0 1 591 0 3 222 1 2 36 0 2 809 0 1 496 1 0 304 0 1 54 3 2 46 1 2 56 1 0 328 4 8 67 0 2 257 0 2 374 4 0 74 0 7 47 chain 48410 chr5 180915260 + 180323347 180323894 L1PA4 6152 - 0 552 60171 6 0 5 541 chain 552049 chr5 180915260 + 180329538 180335537 L1PA2 6032 - 14 6032 1187 154 0 1 476 0 1 2669 0 4 104 0 1 1784 0 4 330 0 8 482 chain 12276 chr5 180915260 + 180337190 180337686 MER83 447 + 0 408 151090 54 66 0 39 253 230 76 0 1 8 chain 4996 chr5 180915260 + 180343808 180343867 MER44B 551 - 400 459 195187 59 chain 522927 chr5 180915260 + 180353027 180359355 L1PA7 6471 + 0 6459 4874 403 1 5 204 11 12 636 5 0 434 1 0 65 1 0 603 0 20 227 0 1 30 0 1 520 0 1 779 1 0 266 0 6 584 1 0 344 1 3 158 0 1 28 0 7 9 8 1 245 0 1 28 2 0 76 1 3 437 0 101 85 1 2 133 chain 21042 chr5 180915260 + 180362919 180363206 AluSc 308 - 16 307 123758 14 0 5 122 11 11 13 2 0 119 0 1 6 chain 6713 chr5 180915260 + 180396191 180396283 LTR12C 1709 - 732 1061 179591 27 0 237 65 chain 4527 chr5 180915260 + 180400659 180400709 L1MA9 1812 + 470 520 200480 50 chain 29571 chr5 180915260 + 180427524 180427842 AluYb8 318 + 0 318 86325 318 chain 426732 chr5 180915260 + 180434751 180443193 L1PA7 6471 + 5 6470 9378 20 0 1 4 7 13 97 64 63 41 0 15 153 0 1 45 0 1 122 11 19 67 47 50 206 16 0 344 6 7 120 1 4 59 9 0 99 1 3 199 0 1 62 0 4 6 9 5 329 0 4 468 1 3 48 0 10 191 0 4 203 0 4 403 1 0 46 0 4 271 10 7 233 3 4 112 0 1 471 2811 794 282 1 0 23 1 0 386 1 0 27 1 2 304 chain 159385 chr5 180915260 + 180439356 180442158 L1PA6 6164 + 3853 6160 23412 45 1 2 51 0 1 560 11 15 20 0 4 107 3 4 101 4 0 64 2 0 310 815 316 40 0 1 660 2 0 6 chain 69137 chr5 180915260 + 180440647 180441450 L1PA6 6164 - 731 1545 48743 651 0 12 94 1 0 57 chain 145304 chr5 180915260 + 180443193 180444984 L1PA8 5853 + 4023 5853 25235 187 1 0 42 0 1 180 0 12 87 0 1 146 0 9 321 4 0 23 0 23 509 1 0 30 0 7 7 6 4 67 1 0 9 1 0 7 2 0 44 3 2 19 1 0 93 chain 2935 chr5 180915260 + 180449760 180449796 L1M1 2793 + 1733 1769 226406 36 chain 5366 chr5 180915260 + 180457415 180457481 L1MA8 2339 + 1177 1244 191348 46 0 1 20 chain 9847 chr5 180915260 + 180459716 180459964 LTR12D 1347 + 501 752 161359 35 0 31 17 69 24 59 35 52 33 chain 39492 chr5 180915260 + 180466030 180466584 LTR61 567 + 0 567 70030 11 1 0 10 8 9 25 0 11 46 2 0 27 10 15 34 5 0 203 0 5 21 6 5 145 chain 23094 chr5 180915260 + 180491159 180491451 AluSc 308 - 9 298 115167 8 5 0 17 0 2 262 chain 12564 chr5 180915260 + 180494421 180494650 AluJr4 308 - 68 287 149991 53 1 0 28 8 5 14 0 1 20 5 0 17 0 1 18 3 0 21 20 20 21 chain 58723 chr5 180915260 + 180522053 180522715 L1PA5 6144 + 5478 6141 53569 34 0 1 628 chain 6881 chr5 180915260 + 180524069 180524142 tRNA-Val-GTG 73 + 0 73 178349 73 chain 7808 chr5 180915260 + 180524473 180524555 tRNA-Leu-CTY 82 - 0 82 172263 82 chain 7808 chr5 180915260 + 180528839 180528921 tRNA-Leu-CTY 82 + 0 82 172261 82 chain 6881 chr5 180915260 + 180529252 180529325 tRNA-Val-GTG 73 - 0 73 178351 73 chain 140628 chr5 180915260 + 180571736 180573944 MER4-int 2692 + 784 2667 26048 7 9 0 43 29 29 39 0 1 201 1 8 177 0 1 51 1 7 110 2 0 407 1 0 80 0 1 82 344 11 86 1 0 28 20 23 94 0 2 221 0 1 5 2 1 167 chain 31835 chr5 180915260 + 180573944 180574364 MER4A1 472 + 17 458 81113 200 14 35 206 chain 4584 chr5 180915260 + 180591153 180591202 tRNA-Val-GTY 66 + 0 49 199821 49 chain 4584 chr5 180915260 + 180596609 180596658 tRNA-Val-GTY 66 + 0 49 199820 49 chain 6881 chr5 180915260 + 180600649 180600722 tRNA-Val-GTG 73 + 0 73 178348 73 chain 7808 chr5 180915260 + 180601043 180601125 tRNA-Leu-CTY 82 - 0 82 172262 82 chain 18435 chr5 180915260 + 180602631 180602911 AluSq2 311 + 20 294 131680 112 23 24 9 1 0 4 0 1 41 1 0 73 6 0 10 chain 18076 chr5 180915260 + 180604926 180605139 MER11A 1151 + 7 228 132660 72 0 8 141 chain 7939 chr5 180915260 + 180614700 180614782 tRNA-Leu-CTY 82 + 0 82 171392 82 chain 6948 chr5 180915260 + 180615853 180615925 tRNA-Pro-CCA 73 - 1 73 177837 72 chain 3729 chr5 180915260 + 180618719 180618758 tRNA-Thr-ACA 39 - 0 39 211502 39 chain 6808 chr5 180915260 + 180633867 180633939 tRNA-Ala-GCG 72 + 0 72 178894 72 chain 4120 chr5 180915260 + 180634754 180634797 tRNA-Lys-AAG 49 + 0 43 205656 43 chain 4584 chr5 180915260 + 180645293 180645342 tRNA-Val-GTY 66 - 17 66 199826 49 chain 4120 chr5 180915260 + 180649008 180649051 tRNA-Lys-AAG 49 - 6 49 205658 43 chain 6881 chr5 180915260 + 180649394 180649467 tRNA-Val-GTG 73 - 0 73 178350 73 chain 20383 chr5 180915260 + 180671493 180671785 AluSx1 309 + 2 285 125951 99 40 31 153 chain 81990 chr5 180915260 + 180693862 180694827 LTR5_Hs 974 - 0 974 42764 63 1 0 8 0 2 186 0 2 251 0 4 437 0 2 19 chain 13903 chr5 180915260 + 180701613 180701769 L1PA3long 6157 - 0 156 144906 156 chain 22477 chr5 180915260 + 180719405 180719687 AluSp 311 + 2 286 118124 51 12 14 219 chain 84861 chr5 180915260 + 180731907 180732970 MER11B 1079 - 0 1079 41567 11 5 4 294 8 2 384 0 1 50 0 17 86 0 5 225 chain 2734 chr5 180915260 + 180734410 180734440 MER21C 908 - 858 888 229692 30 chain 30336 chr5 180915260 + 180739095 180739412 AluYb8 318 - 1 318 83820 317 chain 512113 chr5 180915260 + 180798608 180805030 L1PA7 6471 - 3 6471 5964 9 2 0 126 12 13 250 1 0 432 0 4 16 1 0 14 0 1 254 1 0 457 1 2 194 2 0 52 0 2 129 0 35 124 0 5 251 0 1 88 2 0 174 1 0 25 0 1 118 3 7 187 2 0 74 13 11 6 0 7 299 0 4 12 3 1 450 0 1 229 2 3 166 0 1 291 0 1 243 0 1 261 5 0 534 20 14 228 0 1 4 1 0 20 7 8 59 1 8 132 22 16 148 2 3 63 3 2 196 chain 14726 chr5 180915260 + 180807315 180807481 L1PA4 6152 - 11 177 142178 166 chain 66186 chr5 180915260 + 180807481 180808203 L1PA4 6152 + 5252 5974 50012 722 chain 8592 chr5 180915260 + 180810115 180810213 L1PA5 6144 - 0 98 167771 98 chain 22134 chr5 180915260 + 180813186 180813571 L1PA8A 6298 - 123 428 119652 26 82 6 9 4 0 126 9 9 129 chain 22970 chr5 180915260 + 180822138 180822404 L1PA5 6144 + 5872 6142 115751 216 0 4 50 chain 9317 chr5 180915260 + 180845075 180845183 L1PA4 6152 + 6039 6152 163971 102 0 5 6 chain 19163 chr5 180915260 + 180845193 180845488 LTR39 781 + 177 474 129635 90 23 16 138 14 23 30 chain 57093 chr5 180915260 + 180856736 180857806 MER4E1 777 - 0 777 54476 217 0 4 6 9 7 28 3 25 148 310 0 137 1 0 4 7 5 155 1 0 16 3 0 25 chain 38455 chr5 180915260 + 180859090 180859748 LTR9B 643 - 0 643 71510 40 13 12 57 3 17 14 12 1 32 67 41 35 5 6 87 2 1 84 0 2 5 4 9 65 0 2 133 chain 3610 chr5 180915260 + 180896385 180896430 L1MC3 1789 - 918 963 213480 45 chain 3268 chr5 180915260 + 180900430 180900471 MLT2B3 573 + 2 43 219629 41 chain 3843 chr5 180915260 + 180903014 180903057 MER72 723 - 0 43 209743 43 chain 28633 chr6 171115067 + 62185 62526 L1PA7 6471 - 6 349 90586 7 0 2 334 chain 31069 chr6 171115067 + 62526 62898 L1PA7 6471 + 5732 6108 82398 354 0 4 18 chain 95966 chr6 171115067 + 63846 64896 L1PA2 6032 - 0 1051 37830 916 0 1 134 chain 165763 chr6 171115067 + 64898 66693 L1PA2 6032 + 3187 4982 22540 1795 chain 4177 chr6 171115067 + 77950 77997 L1PA6 6164 - 5 52 204869 47 chain 22765 chr6 171115067 + 79440 79706 L1PA5 6144 - 2 272 116753 53 0 4 213 chain 23685 chr6 171115067 + 88275 88584 L1PA8A 6298 + 5870 6175 112127 129 9 9 126 4 0 41 chain 7532 chr6 171115067 + 90934 91017 L1PA5 6144 + 6046 6129 173960 83 chain 65206 chr6 171115067 + 92943 93664 L1PA4 6152 - 178 900 50468 48 0 1 673 chain 14595 chr6 171115067 + 93664 93830 L1PA4 6152 + 5975 6141 142611 166 chain 509257 chr6 171115067 + 96114 102539 L1PA7 6471 + 0 6468 6224 196 3 2 63 2 3 139 1 0 9 10 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 4 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 3 0 97 0 1 251 0 5 128 0 35 125 0 2 52 2 0 194 1 2 457 1 0 256 0 1 12 1 0 17 7 11 423 1 0 239 0 6 6 0 2 6 12 5 126 2 0 9 chain 23582 chr6 171115067 + 117234 117777 L2c 621 - 0 521 112676 15 4 0 12 11 13 53 18 12 113 1 0 60 9 0 9 70 77 65 18 19 35 26 14 24 chain 14597 chr6 171115067 + 120565 120925 THE1B 368 - 0 366 142604 47 24 23 58 84 89 34 36 38 77 chain 7951 chr6 171115067 + 158867 158968 L1PA7 6471 + 3451 3549 171324 52 3 0 46 chain 231332 chr6 171115067 + 158972 162092 L1PA7 6471 + 3557 6377 17239 941 1 0 4 0 1 54 320 0 554 10 11 32 0 1 468 0 2 16 0 4 308 0 8 334 11 14 10 1 2 56 chain 49671 chr6 171115067 + 163199 164021 L1PB1 5432 + 4577 5395 59256 52 0 2 27 0 10 45 1 0 91 1 0 194 1 0 39 1 9 54 19 17 18 1 0 12 1 0 11 5 1 9 12 10 42 2 1 15 1 0 32 0 1 12 1 0 4 70 63 22 1 0 21 1 0 4 chain 15900 chr6 171115067 + 173374 173733 THE1B 368 + 0 368 138660 108 125 135 59 18 17 49 chain 27752 chr6 171115067 + 177804 178138 LTR12 884 + 544 884 93858 20 0 6 314 chain 56799 chr6 171115067 + 178575 179332 LTR12 884 - 0 884 54656 183 2 0 34 1 0 7 1 0 229 0 3 51 1 89 177 7 48 48 2 1 14 chain 5543 chr6 171115067 + 180074 180244 LTR12C 1709 + 928 1068 189631 35 11 55 35 74 0 15 chain 46135 chr6 171115067 + 187172 187799 LTR71B 605 + 0 604 61909 137 12 10 54 3 0 148 15 0 129 0 2 42 9 4 78 chain 4320 chr6 171115067 + 212258 212311 L1MB3 1562 + 991 1044 202969 53 chain 37708 chr6 171115067 + 232174 232702 MER1A 529 - 0 523 72543 68 3 0 70 4 1 234 13 17 97 22 20 4 1 0 12 chain 25754 chr6 171115067 + 240901 241207 AluSp 311 - 6 311 101064 279 1 0 26 chain 195717 chr6 171115067 + 242388 245142 L1MA3 4352 + 1632 4352 19527 21 1 0 116 0 2 11 0 1 256 2 1 273 1 0 204 5 0 70 1 0 461 0 1 26 11 16 53 0 1 171 0 1 20 0 1 43 1 0 15 8 7 14 0 1 277 9 10 7 5 0 378 52 29 62 8 12 42 4 0 22 8 6 19 1 0 6 1 0 27 21 16 21 chain 4090 chr6 171115067 + 245511 245561 LTR37A 408 + 313 363 206084 50 chain 17943 chr6 171115067 + 246769 246991 AluSx4 309 + 87 309 132996 222 chain 7653 chr6 171115067 + 258944 259065 L1PA16 3655 - 233 354 173206 53 0 1 4 13 12 51 chain 15657 chr6 171115067 + 259599 259820 MER30 238 + 0 238 139408 106 13 24 22 1 7 79 chain 52510 chr6 171115067 + 267826 268395 L1PA3long 6157 + 5588 6157 57299 569 chain 19401 chr6 171115067 + 365362 365607 AluSp 311 + 60 305 128944 90 6 6 149 chain 108460 chr6 171115067 + 425199 426763 LTR12C 1709 - 26 1709 34573 58 48 48 106 40 39 56 1 0 12 2 1 135 9 13 33 78 0 70 1 0 108 0 78 72 0 118 539 0 1 196 chain 3183 chr6 171115067 + 425711 425777 LTR12C 1709 - 746 893 156978 31 22 103 13 chain 12464 chr6 171115067 + 435334 435488 LTR12C 1709 - 623 777 150404 154 chain 2728 chr6 171115067 + 448216 448272 MLT1B 390 + 0 56 229755 13 1 2 10 7 6 25 chain 13934 chr6 171115067 + 450442 450616 LTR12C 1709 + 934 1108 144808 174 chain 6877 chr6 171115067 + 450616 450824 LTR12C 1709 + 789 1037 166320 21 41 0 27 11 170 10 78 0 20 chain 72944 chr6 171115067 + 457881 458962 L1PA8 5853 - 6 1089 47049 69 0 3 15 5 4 15 2 1 23 28 17 12 1 0 6 1 0 73 2 0 26 0 4 15 1 0 106 8 10 52 0 2 278 11 14 15 1 0 78 0 2 8 14 12 124 0 5 12 2 3 57 0 1 21 chain 139535 chr6 171115067 + 481503 483081 L1P1 4361 - 212 1802 26213 225 1 0 250 0 2 419 0 9 73 1 0 18 0 2 20 1 0 551 0 2 19 chain 26122 chr6 171115067 + 526432 526738 AluSp 311 - 4 310 99518 306 chain 29841 chr6 171115067 + 544865 545178 AluYb8 318 + 0 313 85308 313 chain 24312 chr6 171115067 + 589838 590131 AluY 311 + 14 298 108593 84 8 0 183 2 1 16 chain 54857 chr6 171115067 + 605401 606020 L1P1 4361 - 916 1536 55794 246 1 2 372 chain 35760 chr6 171115067 + 606022 606427 L1PA5 6144 + 5739 6144 75191 405 chain 12255 chr6 171115067 + 613751 613917 L1PA4 6152 + 6011 6152 151182 130 25 0 11 chain 384686 chr6 171115067 + 660362 665922 L1PB1 5432 + 19 5424 10621 17 25 22 11 25 19 15 0 1 55 0 13 7 13 1 27 3 4 121 0 1 73 1 0 67 2 1 239 11 16 6 0 1 89 0 3 49 0 5 152 8 4 126 0 4 73 8 12 129 0 2 10 90 80 312 0 1 653 13 7 44 10 5 29 132 0 179 0 1 30 2 0 5 0 2 100 1 0 36 8 11 46 0 4 67 0 1 479 0 5 231 21 16 21 17 10 151 0 9 491 0 1 52 0 5 7 18 13 10 0 4 202 1 0 303 0 2 39 0 2 43 1 2 9 3 0 20 1 0 13 20 15 5 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 14 5 18 10 6 14 2 0 24 1 0 13 0 1 7 1 0 13 1 0 16 1 0 4 chain 16452 chr6 171115067 + 695048 695326 LTR12C 1709 + 769 1037 137058 68 1 0 121 73 64 15 chain 52992 chr6 171115067 + 712303 712876 L1PA3long 6157 - 4 577 57022 573 chain 13565 chr6 171115067 + 720971 721148 MER30 238 + 36 233 146109 57 0 6 9 3 17 108 chain 41305 chr6 171115067 + 725180 725720 L1PREC2 3366 - 748 1292 67528 6 0 3 54 12 13 468 chain 22843 chr6 171115067 + 750014 750282 LTR13A 966 - 699 966 116382 182 1 0 85 chain 61044 chr6 171115067 + 772986 774065 L1PA10 4194 - 33 793 52312 11 1 0 34 3 0 85 0 1 95 0 4 25 0 1 195 322 0 270 0 1 38 chain 32018 chr6 171115067 + 790745 791297 LTR12F 595 - 12 595 80834 133 1 0 15 47 43 54 8 0 47 8 56 20 22 7 23 1 10 30 2 0 40 1 2 12 0 3 88 chain 22368 chr6 171115067 + 816037 816322 AluSc 308 + 0 290 118636 46 13 18 226 chain 225705 chr6 171115067 + 823957 826617 L1PA5 6144 - 9 2654 17546 138 0 1 58 3 0 289 1 0 243 21 8 217 1 4 609 0 1 181 2 1 703 2 3 6 3 0 183 chain 220415 chr6 171115067 + 849734 852752 L1PA7 6471 + 3809 6467 17854 190 33 9 34 0 1 482 0 1 439 326 0 128 16 8 415 0 1 107 1 0 36 0 2 348 8 1 141 0 1 155 7 8 6 1 0 145 chain 29522 chr6 171115067 + 850922 851238 AluYb8 318 + 0 313 86560 132 3 0 181 chain 26642 chr6 171115067 + 867816 868110 AluYg6 310 + 0 293 97503 131 2 1 161 chain 4394 chr6 171115067 + 886031 886170 MLT1A 405 - 230 379 202011 14 1 0 6 66 77 52 chain 5603 chr6 171115067 + 887296 887360 L1MB3 1562 - 261 325 189053 64 chain 175151 chr6 171115067 + 921595 924362 HUERS-P2-int 2744 + 2 2742 21441 15 4 1 12 7 1 16 3 6 32 11 8 51 2 1 18 3 0 8 23 19 46 120 85 6 1 0 70 0 1 35 1 0 8 1 0 22 1 0 5 1 0 21 0 2 216 54 1 36 7 5 47 7 9 62 0 1 37 5 26 46 7 12 62 0 1 59 0 6 64 0 33 68 0 7 642 3 0 317 44 74 20 1 0 22 1 3 73 1 0 69 7 5 30 4 0 37 2 1 9 1 0 7 6 4 14 1 0 39 3 0 34 1 0 9 2 0 5 2 0 12 2 0 27 chain 52690 chr6 171115067 + 928985 929588 L1PA5 6144 + 5541 6144 57194 603 chain 63554 chr6 171115067 + 932042 932766 L1PA7 6471 - 10 735 51216 329 0 1 395 chain 24763 chr6 171115067 + 983602 983898 AluY 311 + 11 302 106093 112 8 3 176 chain 236442 chr6 171115067 + 985279 988159 L1PA8 5853 - 0 2875 16956 93 1 0 15 10 8 28 0 1 29 2 1 70 2 0 46 1 0 531 2 3 12 0 1 6 1 4 271 1 0 51 7 0 8 0 7 119 5 4 1331 7 5 231 chain 16856 chr6 171115067 + 1014923 1015119 L1PA8 5853 - 870 1066 135954 196 chain 67069 chr6 171115067 + 1015119 1016004 L1PA8 5853 + 4979 5853 49628 30 0 2 83 1 0 425 4 6 39 1 0 41 7 5 69 1 0 6 8 0 55 2 1 19 1 0 93 chain 33318 chr6 171115067 + 1021692 1022172 LTR12F 595 - 10 595 78707 8 0 6 16 5 0 104 2 1 4 0 1 16 0 1 6 12 14 11 0 1 157 5 93 34 0 12 100 chain 29571 chr6 171115067 + 1030497 1030815 AluYb8 318 + 0 318 86324 318 chain 11585 chr6 171115067 + 1042115 1042309 L1PB 1623 - 1309 1501 153948 44 16 15 63 7 4 16 1 3 47 chain 24200 chr6 171115067 + 1155864 1156241 THE1C 375 + 0 375 109215 55 1 0 70 3 0 161 6 8 21 29 0 9 4 33 18 chain 113376 chr6 171115067 + 1156241 1157827 THE1C-int 1605 + 0 1603 33258 16 1 2 98 0 54 145 0 15 113 0 13 4 0 1 249 47 41 249 55 2 426 42 34 141 chain 24780 chr6 171115067 + 1158228 1158529 MER4D0 881 + 580 881 105998 301 chain 14702 chr6 171115067 + 1159958 1160193 L1PA15 4387 + 3990 4207 142266 4 1 0 109 2 1 26 1 0 54 23 8 15 chain 26222 chr6 171115067 + 1162171 1162447 AluYa5 310 + 34 310 99118 276 chain 82046 chr6 171115067 + 1173156 1174149 L1PA7 6471 - 13 1008 42744 148 13 14 769 0 1 63 chain 24140 chr6 171115067 + 1174149 1174439 L1PA7 6471 + 5190 5482 108630 140 6 7 90 0 1 54 chain 7514 chr6 171115067 + 1186755 1186853 U13_ 108 + 4 103 174070 34 1 2 63 chain 4272 chr6 171115067 + 1229744 1229869 MER20 218 - 53 179 203590 20 47 51 5 2 0 4 1 0 46 chain 6712 chr6 171115067 + 1260899 1260993 Tigger1 2417 + 2240 2333 179604 8 0 3 18 4 0 64 chain 29013 chr6 171115067 + 1330281 1330607 LTR17 781 - 455 781 88926 326 chain 56126 chr6 171115067 + 1331157 1331830 HERV17-int 4347 - 697 1371 55051 16 2 1 5 0 1 77 0 1 135 5 4 384 0 1 49 chain 44960 chr6 171115067 + 1352640 1353174 THE1A-int 1579 - 31 562 63107 109 4 0 295 1 2 125 chain 163981 chr6 171115067 + 1353489 1355660 L1PBa 3878 + 1142 3351 22810 188 0 21 263 3 0 5 19 33 173 0 1 756 0 3 128 0 1 40 4 8 270 0 1 7 6 4 4 0 1 135 6 8 15 18 13 131 chain 6279 chr6 171115067 + 1355678 1355751 L1PB 1623 + 641 714 182948 73 chain 17712 chr6 171115067 + 1355751 1355966 L1PB 1623 + 623 839 133671 211 0 1 4 chain 39884 chr6 171115067 + 1362035 1362503 L1PA5 6144 + 5676 6144 69479 311 0 1 138 1 0 18 chain 559562 chr6 171115067 + 1428849 1434983 L1PA3long 6157 - 5 6157 384 1794 0 4 539 0 1 2394 0 9 219 0 3 1035 0 1 153 chain 16627 chr6 171115067 + 1448394 1448629 L1PB3 3668 - 194 437 136594 83 7 12 16 0 3 69 1 0 24 0 1 35 chain 102303 chr6 171115067 + 1456484 1457767 LTR12C 1709 - 0 1709 36193 84 8 7 77 1 0 23 5 111 179 11 4 89 0 47 80 0 278 79 0 2 444 1 2 4 0 1 198 chain 12132 chr6 171115067 + 1462391 1462748 LTR49-int 1717 + 1443 1686 151686 95 6 4 29 16 14 34 1 0 8 142 33 26 chain 18415 chr6 171115067 + 1466702 1467032 MER4D 903 - 28 362 131732 25 1 2 14 10 11 31 0 1 84 57 48 80 0 10 28 chain 4212 chr6 171115067 + 1469207 1469278 MER4A 717 - 648 717 204399 8 1 0 38 9 8 15 chain 41595 chr6 171115067 + 1475720 1476246 L1PA8 5853 + 5333 5853 67159 231 1 0 43 3 1 71 1 0 8 0 6 7 8 2 42 1 0 18 1 0 91 chain 3580 chr6 171115067 + 1481425 1481469 MLT1B 390 - 281 325 213985 44 chain 3938 chr6 171115067 + 1486296 1486345 L1MC1 2226 + 1998 2047 208294 49 chain 3299 chr6 171115067 + 1499960 1499997 LTR41 747 + 668 705 218980 37 chain 8587 chr6 171115067 + 1569835 1569935 L1PA5 6144 + 6044 6144 167802 100 chain 13420 chr6 171115067 + 1665333 1665485 L1PA4 6152 - 0 152 146630 152 chain 180037 chr6 171115067 + 1676100 1678190 L1PA5 6144 + 3285 6144 20988 153 0 781 591 1 0 4 0 2 361 1 4 306 13 0 28 10 7 622 chain 29256 chr6 171115067 + 1682794 1683102 AluYa5 310 - 2 310 87756 308 chain 341115 chr6 171115067 + 1750525 1754949 L1P3 4156 + 6 4139 11867 245 6 5 66 1 0 44 0 12 23 1 0 219 0 1 582 313 0 29 0 4 902 0 1 162 0 1 327 7 1 256 5 9 163 0 1 34 0 4 377 1 0 336 1 6 10 0 1 156 5 6 118 2 0 7 2 1 24 chain 27841 chr6 171115067 + 1888825 1889219 THE1D-int 1627 - 5 400 93558 262 36 37 96 chain 45964 chr6 171115067 + 1964926 1965480 L1PA4 6152 - 9 572 62068 35 8 12 92 1 8 247 7 5 164 chain 323662 chr6 171115067 + 1979275 1984037 L1PA11 4918 + 14 4578 12458 19 10 16 22 3 1 7 3 0 34 1 0 15 8 8 44 1 0 33 2 0 3 1 0 46 0 12 9 4 0 31 0 2 24 6 1 798 0 3 266 7 1 21 0 1 41 41 39 31 3 1 15 0 1 144 0 12 98 1 2 68 6 0 16 0 1 279 46 50 5 0 1 6 2 0 19 3 7 237 0 1 12 6 19 177 1 0 8 1 0 192 1 0 4 0 1 22 0 1 37 0 1 26 244 32 112 0 1 180 0 7 323 1 0 36 5 4 613 0 4 78 1 0 11 3 0 68 2 0 6 11 12 16 4 0 9 8 3 15 8 4 15 1 0 13 2 0 11 chain 95678 chr6 171115067 + 2049960 2051103 L1P1 4361 + 2829 3973 37906 382 0 3 72 1 0 104 1 0 583 chain 19349 chr6 171115067 + 2051104 2051334 L1PA6 6164 + 5914 6147 129072 35 0 3 195 chain 490331 chr6 171115067 + 2065216 2070662 L1PA3long 6157 + 573 6157 7347 195 8 136 258 0 3 110 1 0 506 0 2 163 0 2 342 0 4 3863 chain 58495 chr6 171115067 + 2076501 2077145 L1PA4 6152 + 4497 5140 53703 138 1 0 505 chain 22005 chr6 171115067 + 2178417 2178849 MSTA 426 - 0 426 120206 169 75 70 18 39 51 10 11 0 3 2 0 105 chain 3756 chr6 171115067 + 2192438 2192477 MER52D 1964 + 1102 1141 211041 39 chain 24143 chr6 171115067 + 2235098 2235383 AluSp 311 + 21 306 109505 285 chain 521816 chr6 171115067 + 2286478 2292917 L1PA7 6471 + 0 6459 4981 75 0 1 56 0 14 94 0 8 154 6 1 487 0 1 450 0 1 4 1 0 1294 0 1 96 0 1 157 0 3 110 0 3 89 0 4 34 17 3 257 0 1 81 16 13 4 1 0 32 3 1 80 0 4 591 0 1 51 1 2 406 9 11 523 0 4 351 0 4 63 0 3 400 10 0 107 1 0 174 15 16 131 1 0 7 chain 113422 chr6 171115067 + 2293059 2295424 L1PB3 3668 + 1833 3566 33245 214 12 18 43 4 0 206 0 1 21 7 8 38 0 6 44 6 5 230 1 0 99 0 23 68 1 0 24 0 3 104 2 0 10 3 0 33 0 10 41 0 2 46 6 7 89 732 80 67 2 0 17 2 1 83 23 7 13 2 1 5 0 1 27 3 1 37 chain 19623 chr6 171115067 + 2298068 2298413 THE1C 375 + 0 333 128326 15 2 0 30 12 4 4 1 0 14 22 23 19 7 8 69 0 1 41 13 9 96 chain 267712 chr6 171115067 + 2300070 2303238 L1PA6 6164 + 2985 6150 15309 211 0 1 69 0 4 9 0 2 242 0 1 838 0 4 312 0 1 740 16 1 5 0 2 61 1 0 149 0 1 470 14 11 31 chain 339948 chr6 171115067 + 2303261 2307354 HERVL-int 5654 + 1563 5654 11900 167 7 11 329 23 22 988 0 3 225 0 1 161 1 0 163 11 0 736 1 0 158 1 0 1023 0 5 99 chain 28156 chr6 171115067 + 2307354 2307737 MLT2A1 477 + 0 381 92442 169 4 1 11 2 0 13 0 1 8 5 6 158 1 2 12 chain 14112 chr6 171115067 + 2310438 2310634 MER21B 843 - 28 217 144171 6 3 0 73 12 8 102 chain 37730 chr6 171115067 + 2310642 2311097 LTR2 463 - 0 463 72515 434 0 1 8 1 8 12 chain 421141 chr6 171115067 + 2311097 2316147 Harlequin-int 5206 - 0 5078 9509 331 3 0 227 0 1 492 0 1 844 5 4 200 5 13 293 0 1 301 0 3 232 1 2 318 0 1 634 0 2 9 0 1 88 0 3 57 0 1 231 5 7 57 0 1 52 2 0 31 0 10 80 1 0 151 0 1 4 3 1 38 3 1 112 2 1 69 1 0 99 0 5 54 1 0 14 chain 38427 chr6 171115067 + 2317879 2318332 LTR2 463 - 0 456 71539 405 0 3 48 chain 18143 chr6 171115067 + 2334291 2334622 THE1B 368 - 33 368 132488 92 66 70 4 1 0 34 26 27 108 chain 21316 chr6 171115067 + 2335673 2336020 L1PB1 5432 + 4946 5281 122819 154 16 14 24 1 0 5 1 0 13 2 0 3 2 0 9 7 5 47 2 1 15 1 0 45 chain 36685 chr6 171115067 + 2371871 2372270 L1PA4 6152 - 675 1078 73977 169 0 4 230 chain 61365 chr6 171115067 + 2372270 2372940 L1PA4 6152 + 5470 6140 52166 670 chain 2707 chr6 171115067 + 2378497 2378582 MER103C 291 + 113 217 230151 13 9 10 19 23 41 21 chain 14043 chr6 171115067 + 2384017 2384195 L1PA4 6152 - 1 180 144411 34 9 0 8 0 9 44 0 1 83 chain 15953 chr6 171115067 + 2387650 2387947 THE1B 368 + 1 306 138511 107 26 27 42 38 36 11 9 18 64 chain 569014 chr6 171115067 + 2418008 2424037 L1HS 6032 - 3 6032 2 6029 chain 50940 chr6 171115067 + 2483726 2484759 LTR12D 1347 - 0 946 58346 14 10 0 8 1 3 198 323 195 15 0 2 197 0 17 104 9 8 18 2 33 134 chain 402197 chr6 171115067 + 2583746 2589242 L1PB1 5432 - 5 5406 10019 7 1 0 16 1 0 7 6 5 22 1 0 24 21 19 19 14 5 7 3 0 15 5 4 40 1 0 16 2 1 50 133 67 104 12 15 141 32 31 180 4 0 160 0 1 83 0 1 24 1 0 205 11 1 419 31 25 91 8 9 771 1 0 144 0 1 203 10 0 513 4 5 126 0 4 420 0 1 27 20 7 93 12 0 7 15 27 286 1 0 213 0 7 386 1 16 14 0 3 283 9 10 20 chain 33310 chr6 171115067 + 2612992 2613374 L1PA7 6471 + 6076 6461 78719 60 0 1 99 0 2 223 chain 4734 chr6 171115067 + 2628458 2628586 MER20 218 + 0 127 198118 14 18 17 35 13 16 7 1 0 16 6 4 18 chain 24345 chr6 171115067 + 2727916 2728201 AluSc 308 + 16 300 108393 241 1 0 43 chain 22331 chr6 171115067 + 2737284 2737537 AluSc 308 + 18 271 118770 253 chain 49388 chr6 171115067 + 2742574 2743107 L1PA3long 6157 + 5619 6152 59457 533 chain 9583 chr6 171115067 + 2763375 2763484 LTR12C 1709 - 832 940 162680 40 1 0 68 chain 36049 chr6 171115067 + 2801765 2802148 L1HS 6032 - 3 386 74833 383 chain 121131 chr6 171115067 + 2860195 2861959 LTR12C 1709 + 0 1702 30657 104 5 4 178 0 4 19 0 1 4 1 0 498 0 40 259 1 0 6 2 0 107 0 4 63 161 53 16 12 14 63 17 0 7 13 29 125 11 10 22 33 35 37 chain 5938 chr6 171115067 + 2866045 2866157 LTR56 451 + 145 259 185797 19 30 28 15 0 4 48 chain 4783 chr6 171115067 + 2869826 2870058 LTR12C 1709 - 981 1055 197548 13 0 2 30 160 0 29 chain 290631 chr6 171115067 + 2877118 2881222 L1PBa1 4058 + 10 4040 13982 20 34 30 117 0 2 86 0 1 165 3 1 81 21 21 28 7 6 47 17 16 116 1 2 319 0 1 91 48 0 30 0 1 253 23 16 89 1 0 50 5 32 36 2 0 460 1 2 16 0 1 315 21 11 174 0 6 8 6 10 207 18 3 47 0 1 55 3 1 398 1 8 44 7 6 53 1 0 60 4 0 112 1 0 7 1 0 22 8 7 26 17 15 47 1 0 61 3 1 17 2 1 9 11 5 9 2 0 22 2 1 4 1 0 4 3 0 21 1 0 9 2 1 13 1 0 5 1 0 9 1 0 16 2 1 42 chain 77630 chr6 171115067 + 2908896 2909864 LTR5_Hs 974 + 0 974 44679 168 1 0 117 0 1 181 0 1 349 0 6 7 0 1 34 8 6 103 chain 14478 chr6 171115067 + 2913270 2913435 L1PA4 6152 - 20 185 142957 165 chain 28756 chr6 171115067 + 2919983 2920354 MER4B 649 - 8 418 90087 12 1 0 48 0 1 16 1 0 177 2 42 114 chain 76512 chr6 171115067 + 2927724 2928767 MER11C 1089 + 0 1057 45206 247 0 9 61 0 4 65 1 0 149 67 64 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 19 chain 3488 chr6 171115067 + 2935434 2935473 MER45A 178 - 8 47 215572 39 chain 4717 chr6 171115067 + 2936602 2936834 LTR12C 1709 + 810 885 198321 27 1 0 7 158 2 39 chain 8665 chr6 171115067 + 2941634 2941741 MER4D1 891 - 14 121 167399 107 chain 60484 chr6 171115067 + 2972472 2973410 L1PB1 5432 + 4476 5391 52587 37 1 0 108 0 2 28 0 3 50 1 3 104 8 0 52 5 14 226 14 12 23 1 0 9 1 0 9 4 3 8 2 0 53 2 1 16 8 7 37 1 0 15 1 0 4 3 0 10 1 0 4 29 17 15 2 0 24 1 0 21 chain 91076 chr6 171115067 + 3008899 3009964 MER11C 1089 - 16 1083 39268 145 0 1 150 0 1 38 0 1 144 1 2 13 8 6 566 chain 24086 chr6 171115067 + 3024640 3024927 AluSp 311 - 20 311 109820 206 6 10 75 chain 5036 chr6 171115067 + 3028381 3028600 LTR12E 1234 + 762 846 194775 47 42 1 18 96 2 16 chain 19718 chr6 171115067 + 3039083 3039305 L1PA4 6152 - 6 229 128046 90 0 1 132 chain 26929 chr6 171115067 + 3040849 3041146 AluYc 301 + 2 299 96517 297 chain 28858 chr6 171115067 + 3055033 3055385 LTR5_Hs 974 + 0 353 89635 161 0 1 5 1 0 118 0 1 67 chain 30817 chr6 171115067 + 3055396 3055742 HERVK-int 6823 + 4767 5113 82839 346 chain 4640 chr6 171115067 + 3080072 3080123 5S 121 - 29 80 199185 51 chain 2925 chr6 171115067 + 3124353 3124385 MER81 114 - 44 76 226587 32 chain 103605 chr6 171115067 + 3170818 3172183 LTR12C 1709 + 0 1709 35831 431 0 2 217 0 278 144 0 2 38 1 0 5 3 1 41 0 2 63 0 4 114 0 29 24 1 0 13 3 7 19 3 6 7 1 0 51 8 6 39 11 36 10 12 14 106 chain 25913 chr6 171115067 + 3173679 3174085 LTR7 482 + 0 477 100361 69 6 95 16 51 0 44 5 37 46 0 1 169 chain 25800 chr6 171115067 + 3181000 3181305 AluSp 311 + 4 310 100866 185 0 1 120 chain 112793 chr6 171115067 + 3197950 3199189 L1PA3long 6157 - 108 1349 33446 125 0 2 1114 chain 11737 chr6 171115067 + 3199195 3199324 L1PA3long 6157 + 4665 4794 153315 129 chain 11676 chr6 171115067 + 3201653 3201951 Charlie1a 1436 + 1120 1432 153577 77 134 147 55 0 1 32 chain 12517 chr6 171115067 + 3215294 3215497 MER30 238 + 0 237 150173 13 16 33 53 13 30 108 chain 3562 chr6 171115067 + 3215822 3215861 Tigger2a 444 + 140 179 214302 39 chain 14510 chr6 171115067 + 3233256 3233523 L1PA17 2846 - 160 426 142855 14 17 22 18 1 0 10 25 24 64 1 0 17 5 0 63 0 2 32 chain 30314 chr6 171115067 + 3241822 3242240 L1PA8 5853 - 0 417 83871 93 7 5 10 7 8 48 1 2 8 1 3 68 2 0 46 1 0 126 chain 5456 chr6 171115067 + 3254333 3254398 LTR12C 1709 + 928 993 190463 65 chain 29204 chr6 171115067 + 3298924 3299230 AluYb8 318 + 0 306 88027 306 chain 2797 chr6 171115067 + 3314637 3314777 MIR 256 + 63 208 228765 12 24 27 27 61 63 16 chain 5675 chr6 171115067 + 3316334 3316400 MER5A 189 - 123 189 188338 66 chain 4450 chr6 171115067 + 3335946 3335996 MADE1 96 + 46 96 201337 50 chain 3273 chr6 171115067 + 3338843 3338924 MER34A 573 + 490 568 219547 22 23 22 22 2 0 12 chain 45543 chr6 171115067 + 3339659 3340213 MER41A 554 + 0 554 62467 554 chain 18238 chr6 171115067 + 3461644 3461888 AluSc 308 + 9 257 132238 43 0 5 146 1 2 24 12 10 18 chain 8359 chr6 171115067 + 3462740 3462851 L1MC3 1789 + 1075 1185 169076 72 2 0 17 0 1 20 chain 28600 chr6 171115067 + 3469173 3469628 LTR7B 505 + 0 505 90729 93 4 35 26 1 2 52 23 44 155 0 1 4 17 16 13 14 13 26 2 0 25 chain 4654 chr6 171115067 + 3479739 3479800 MLT1B-int 1170 - 724 789 199028 51 0 4 10 chain 2880 chr6 171115067 + 3482468 3482507 MER21C 908 - 535 573 227370 30 1 0 8 chain 29563 chr6 171115067 + 3490563 3491056 MER1A 529 + 0 523 86365 29 54 55 142 3 19 45 0 15 77 3 0 61 23 24 56 chain 4609 chr6 171115067 + 3491214 3491268 L1MA5A 2387 - 103 157 199521 54 chain 33179 chr6 171115067 + 3504918 3505639 LTR12F 595 - 8 595 78940 48 18 22 22 15 23 22 1 0 5 0 1 6 0 1 45 76 0 11 0 1 145 24 0 20 6 15 15 0 9 32 3 1 9 30 0 29 43 3 58 1 7 37 chain 14191 chr6 171115067 + 3537421 3537619 L1PA8 5853 + 5659 5853 143914 19 2 1 14 1 0 47 2 1 19 1 0 93 chain 12456 chr6 171115067 + 3543536 3543787 MLT1B 390 - 71 340 150437 89 3 4 9 5 16 39 1 2 14 52 57 39 chain 27942 chr6 171115067 + 3547752 3548172 LTR7B 505 + 1 495 93192 89 0 3 15 0 10 48 9 47 12 3 27 16 10 12 82 2 0 79 14 13 41 chain 2735 chr6 171115067 + 3608354 3608422 MER45R 1085 + 238 309 229678 23 25 28 20 chain 54704 chr6 171115067 + 3613681 3614352 L1PA8 5853 + 5184 5853 55898 353 0 5 22 1 0 46 2 0 69 1 0 17 1 0 44 2 1 19 1 0 93 chain 24393 chr6 171115067 + 3622203 3622502 AluSp 311 - 4 302 108118 179 1 0 119 chain 24269 chr6 171115067 + 3629990 3630290 AluY 311 + 0 295 108853 123 7 1 10 0 1 160 chain 21423 chr6 171115067 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chain 2699 chr6 171115067 + 3809989 3810131 MER2 342 - 121 284 230236 26 97 118 19 chain 5756 chr6 171115067 + 3819554 3819622 MER4B 649 - 522 590 187585 68 chain 4971 chr6 171115067 + 3852795 3852912 MER5A1 166 + 24 134 195466 15 6 9 17 13 1 37 14 16 15 chain 4316 chr6 171115067 + 3858365 3858417 MLT1F 544 + 326 379 203012 23 0 1 29 chain 109952 chr6 171115067 + 3863430 3864649 L1PA4 6152 - 11 1236 34229 7 0 6 1212 chain 42952 chr6 171115067 + 3882203 3882718 MER9a3 513 - 0 513 65476 74 10 11 143 0 1 28 1 0 238 3 0 18 chain 59483 chr6 171115067 + 3907469 3908226 MER4E 760 + 0 760 53123 17 1 0 134 22 25 51 0 1 36 0 1 4 1 0 261 2 0 21 1 0 113 0 1 69 0 2 24 chain 9787 chr6 171115067 + 3913945 3914091 MER4B 649 - 7 150 161667 9 1 0 9 0 1 53 7 6 35 2 0 30 chain 44031 chr6 171115067 + 3916948 3917462 MER9a3 513 + 0 513 64166 494 1 0 19 chain 14584 chr6 171115067 + 3919982 3920287 MER61A 341 - 0 341 142648 39 36 35 47 6 5 18 50 44 55 0 44 54 chain 9970 chr6 171115067 + 3969341 3969460 MER50 708 - 30 149 160725 119 chain 51477 chr6 171115067 + 3973251 3974272 MER4E1 777 + 0 769 57987 92 0 1 15 2 0 9 2 0 155 322 64 92 5 7 45 0 1 54 13 15 146 4 6 51 0 2 14 chain 7304 chr6 171115067 + 3998179 3998281 LTR24C 604 + 0 108 175416 38 1 6 44 0 1 19 chain 28829 chr6 171115067 + 4050252 4050559 AluYa5 310 - 3 310 89764 307 chain 6773 chr6 171115067 + 4072607 4072691 L1PA8 5853 + 5761 5847 179154 5 0 3 65 1 0 13 chain 3340 chr6 171115067 + 4076621 4076677 U13_ 108 + 0 57 218220 17 6 7 33 chain 4035 chr6 171115067 + 4089699 4089743 MLT1A0 366 - 0 44 206857 44 chain 14301 chr6 171115067 + 4090812 4091065 LTR12C 1709 + 674 1086 143560 29 41 0 109 16 216 58 chain 24070 chr6 171115067 + 4158682 4158973 AluY 311 + 2 293 109923 130 1 2 65 1 0 94 chain 7931 chr6 171115067 + 4191333 4191431 LTR12C 1709 - 638 777 171439 34 0 41 64 chain 98722 chr6 171115067 + 4193758 4194826 L1PA2 6032 - 4 1072 37096 1068 chain 82656 chr6 171115067 + 4196085 4197325 HSMAR2 1300 + 16 1300 42483 252 19 18 59 0 2 42 20 59 72 2 1 115 45 47 79 0 1 69 8 9 231 4 7 146 15 18 9 4 0 16 4 3 29 chain 546251 chr6 171115067 + 4198747 4204867 L1PA4 6152 - 0 6140 1915 6 4 0 1105 0 3 1522 1 2 728 0 2 471 1 0 609 0 5 1558 1 15 114 chain 9699 chr6 171115067 + 4218673 4218804 THE1C-int 1605 - 11 142 162091 90 1 2 4 1 0 35 chain 28303 chr6 171115067 + 4220075 4220433 THE1C 375 - 0 361 91935 169 0 3 189 chain 21880 chr6 171115067 + 4222463 4222825 THE1B 368 + 0 368 120711 105 11 12 60 61 66 125 chain 117574 chr6 171115067 + 4222825 4224401 THE1B-int 1605 + 0 1605 31934 12 3 0 418 0 25 10 0 2 180 49 17 9 0 32 566 18 5 35 0 16 24 0 1 212 0 1 40 chain 8096 chr6 171115067 + 4224403 4224506 THE1B 368 + 2 105 170512 103 chain 43332 chr6 171115067 + 4224624 4225195 LTR76 689 + 8 575 64998 27 0 1 13 1 0 130 1 0 210 3 1 4 1 0 81 0 6 33 6 0 61 chain 120437 chr6 171115067 + 4225206 4226815 L1P2 5180 + 2 1625 30894 143 51 49 50 1 0 114 0 1 87 23 16 53 0 8 42 1 0 220 1 16 607 0 1 216 chain 4900 chr6 171115067 + 4228699 4228756 U2 167 - 108 165 196265 57 chain 17050 chr6 171115067 + 4228756 4228952 L1PA5 6144 + 5950 6142 135458 185 4 0 7 chain 484225 chr6 171115067 + 4229136 4235344 L1PA6 6164 + 14 6159 7580 343 34 7 86 41 21 23 1 2 70 22 0 3 54 0 148 7 9 17 22 1 43 0 17 211 4 1 436 1 0 88 0 1 660 0 25 102 1 0 254 0 4 182 1 2 8 4 0 411 1 2 49 20 33 427 0 4 664 0 4 700 0 2 258 1 3 497 1 0 265 0 14 48 chain 7923 chr6 171115067 + 4235489 4235586 THE1B 368 + 243 340 171503 97 chain 13342 chr6 171115067 + 4242748 4243087 THE1D 372 - 4 352 146928 25 8 5 31 1 0 52 1 0 17 1 7 37 4 0 6 48 56 21 55 59 32 chain 104511 chr6 171115067 + 4252017 4253198 L1PA4 6152 + 4949 6151 35616 33 0 1 315 0 4 706 1 13 75 0 4 51 chain 4631 chr6 171115067 + 4255351 4255437 MER20 218 - 78 165 199290 26 1 0 11 1 0 6 12 15 29 chain 40207 chr6 171115067 + 4260836 4261404 MER4E 760 + 0 760 69019 24 2 1 125 41 45 174 1 3 9 2 188 161 1 0 17 0 1 4 0 1 7 chain 21878 chr6 171115067 + 4289308 4289614 AluSq2 311 + 11 293 120724 74 25 0 47 1 2 159 chain 538862 chr6 171115067 + 4328996 4334988 L1PA3long 6157 - 5 6153 3012 1099 1 13 393 0 5 24 1 2 1379 1 0 1861 0 9 461 1 129 611 13 14 81 0 1 66 chain 32790 chr6 171115067 + 4356581 4357091 L1PA15 4387 - 138 638 79551 31 3 2 9 4 0 22 1 0 55 1 0 26 1 0 172 1 0 24 19 20 56 1 0 12 9 7 46 0 1 17 chain 34681 chr6 171115067 + 4358184 4358562 L1PA3long 6157 + 5779 6157 76653 378 chain 25346 chr6 171115067 + 4393585 4393905 L1PA8 5853 + 5539 5853 102979 25 1 0 46 2 0 78 1 0 52 2 1 19 1 0 93 chain 2392 chr6 171115067 + 4401727 4401752 MIRb 242 - 208 233 234277 25 chain 484090 chr6 171115067 + 4405687 4412377 L1PA8A 6298 + 40 6291 7585 16 34 21 17 11 9 16 18 11 19 1 0 8 2 1 15 1 0 4 1 0 9 3 1 15 9 6 12 4 3 6 1 0 9 1 0 6 1 0 6 16 11 5 2 0 11 0 1 19 12 11 20 8 0 80 2 0 18 1 0 76 1 0 9 1 0 182 30 23 92 4 0 311 0 6 73 5 7 25 6 5 32 0 2 959 2 1 159 0 3 79 39 12 12 0 1 6 0 1 259 0 3 167 63 0 422 1 2 6 1 0 336 8 0 7 0 1 166 0 1 554 0 1 255 2 4 139 1 0 149 0 2 513 1 4 53 300 0 17 0 1 142 0 1 284 13 10 182 0 1 107 chain 47272 chr6 171115067 + 4414226 4414890 LTR12F 595 + 0 595 60987 106 0 1 38 2 0 32 0 8 25 82 5 270 0 1 109 chain 11343 chr6 171115067 + 4428196 4428316 5S 121 + 0 120 154911 120 chain 20387 chr6 171115067 + 4434580 4434850 AluSc 308 + 38 308 125939 93 1 0 5 18 19 153 chain 18319 chr6 171115067 + 4445366 4445572 L1PA5 6144 - 9 214 132024 104 1 0 101 chain 14322 chr6 171115067 + 4446982 4447139 L1PA4 6152 - 3 160 143488 157 chain 12546 chr6 171115067 + 4449624 4449769 MER107 203 - 58 203 150059 145 chain 47825 chr6 171115067 + 4470844 4471468 LTR9B 643 - 14 643 60607 31 9 10 322 1 3 57 7 6 134 0 3 63 chain 44778 chr6 171115067 + 4471481 4472015 LTR10A 586 + 0 565 63313 74 0 1 135 0 30 325 chain 6822 chr6 171115067 + 4505698 4505800 MLT1B 390 + 280 380 178778 42 8 6 52 chain 113696 chr6 171115067 + 4506266 4507848 THE1D-int 1627 - 14 1627 33174 100 1 0 24 0 4 108 14 0 6 0 14 57 0 3 25 5 0 35 1 0 7 0 1 140 0 3 8 13 14 199 0 17 165 33 34 106 1 0 7 17 19 97 4 6 307 0 3 90 0 2 12 chain 3742 chr6 171115067 + 4513216 4513332 Kanga1b 635 + 457 571 211306 4 1 0 29 46 42 15 1 4 20 chain 31425 chr6 171115067 + 4519685 4520113 L1PA8 5853 + 5427 5845 81775 137 1 0 44 2 0 8 5 6 54 2 4 10 1 0 50 2 1 18 2 1 25 7 0 60 chain 10715 chr6 171115067 + 4528212 4528349 L1M1 2793 + 2521 2658 157346 81 0 1 25 1 0 30 chain 53434 chr6 171115067 + 4533793 4534530 L1PB3 3668 + 2710 3474 56736 176 0 2 100 8 6 5 2 0 56 2 1 15 4 0 6 3 39 174 1 0 101 1 0 83 chain 24888 chr6 171115067 + 4556538 4556917 MLT2A2 560 - 0 560 105423 45 0 2 7 6 4 41 6 11 37 2 111 28 10 79 15 2 0 180 chain 32696 chr6 171115067 + 4572635 4572991 L1PA3long 6157 - 1011 1368 79261 238 0 1 118 chain 92662 chr6 171115067 + 4572991 4574004 L1PA3long 6157 + 5144 6154 38767 115 3 0 895 chain 28955 chr6 171115067 + 4580254 4580570 AluYb8 318 + 0 314 89200 132 2 0 182 chain 193649 chr6 171115067 + 4594936 4598593 L1PB1 5432 - 16 2717 19720 12 1 0 13 1 0 21 1 0 12 1 0 12 27 22 25 10 0 3 1 0 16 1 0 44 1 0 15 2 1 53 45 29 21 0 5 7 1 2 288 334 11 95 6 7 63 0 8 10 263 0 44 4 0 267 0 1 93 0 1 8 0 2 377 3 7 88 18 0 339 6 12 13 0 1 304 8 7 11 0 9 161 37 5 29 319 4 123 chain 20369 chr6 171115067 + 4596102 4596340 LTR17 781 - 455 693 126001 238 chain 35378 chr6 171115067 + 4614657 4615243 LTR12F 595 - 0 595 75695 26 1 0 5 0 1 112 1 2 60 4 0 143 24 0 31 11 112 19 23 0 21 43 1 62 chain 36836 chr6 171115067 + 4620732 4621194 LTR2 463 - 0 463 73756 88 15 16 219 0 1 124 1 0 15 chain 51549 chr6 171115067 + 4630111 4630743 LTR10E 629 - 0 629 57929 6 1 0 55 2 0 271 2 1 130 0 2 148 1 0 16 chain 4200 chr6 171115067 + 4643995 4644052 U13_ 108 + 1 59 204530 21 1 2 35 chain 43983 chr6 171115067 + 4659585 4660074 L1PA4 6152 - 2 491 64221 489 chain 24346 chr6 171115067 + 4678789 4679169 THE1D 372 + 0 372 108390 13 1 0 8 6 9 23 22 10 97 0 1 21 10 12 146 1 0 32 chain 9178 chr6 171115067 + 4685806 4685904 L1PA7 6471 - 99 197 164666 98 chain 50151 chr6 171115067 + 4700054 4700616 L1PA4 6152 + 5583 6152 58904 549 0 2 7 0 5 6 chain 3275 chr6 171115067 + 4808814 4808849 MER58A 224 + 47 82 219462 35 chain 5693 chr6 171115067 + 4819964 4820078 MER20 218 + 36 140 188174 30 26 19 5 3 0 50 chain 508300 chr6 171115067 + 4830834 4836463 L1PA3long 6157 - 0 6157 6298 7 5 0 560 0 526 561 0 4 1229 0 4 2074 0 3 664 4 0 525 chain 43699 chr6 171115067 + 4865184 4865758 LTR10A 586 + 11 556 64570 255 36 7 283 chain 3002 chr6 171115067 + 4960570 4960602 L1MB7 1623 + 1384 1416 224990 32 chain 130685 chr6 171115067 + 4976104 4978023 L1PB2 3958 - 120 1820 27927 63 1 0 26 2 0 67 2 1 64 1 0 69 4 3 25 0 1 53 186 0 14 4 0 13 2 0 65 3 0 4 2 0 7 1 0 46 11 9 11 1 0 11 2 0 362 1 0 173 4 5 91 0 1 171 13 0 39 0 1 305 chain 16720 chr6 171115067 + 4991977 4992289 MSTA 426 + 0 356 136339 106 30 56 42 10 14 17 11 22 16 3 4 35 5 7 37 chain 23115 chr6 171115067 + 4994378 4994632 L1PA4 6152 + 5889 6143 115063 254 chain 3266 chr6 171115067 + 4997908 4997946 MLT2B3 573 + 535 573 219673 38 chain 22457 chr6 171115067 + 4999525 4999795 AluSc 308 - 3 273 118214 270 chain 28032 chr6 171115067 + 5003300 5003601 AluYg6 310 + 0 301 92886 301 chain 236863 chr6 171115067 + 5017723 5021027 L1P2 5180 - 1963 5167 16935 281 8 10 607 9 2 97 0 25 648 0 1 101 1 0 452 0 1 66 0 1 60 0 6 55 1 16 48 22 1 129 13 13 24 86 11 32 26 25 13 3 4 42 22 5 80 34 7 95 31 30 35 5 4 39 2 1 137 chain 159232 chr6 171115067 + 5037243 5039100 SVA_E 1901 - 0 1901 23436 673 0 78 55 1 0 119 4 49 86 2 0 24 1 0 254 80 0 239 3 0 179 2 0 23 4 14 108 chain 5559 chr6 171115067 + 5068954 5069026 L1PA5 6144 + 6070 6143 189487 60 2 3 10 chain 16705 chr6 171115067 + 5114873 5115099 MER30 238 - 0 238 136392 104 2 0 12 4 11 17 0 3 5 0 4 82 chain 24177 chr6 171115067 + 5187714 5187992 L1PA6 6164 + 5882 6159 109332 94 1 0 183 chain 4099 chr6 171115067 + 5194256 5194304 MLT2D 439 - 0 48 205967 48 chain 3440 chr6 171115067 + 5202174 5202213 MIRb 242 + 91 130 216370 39 chain 47922 chr6 171115067 + 5227729 5228373 L1PA8 5853 + 5215 5853 60543 60 20 11 184 0 1 93 1 0 46 2 0 69 12 10 53 2 1 17 1 0 53 0 9 31 chain 29335 chr6 171115067 + 5242999 5243305 AluYb9 318 - 12 318 87380 306 chain 104564 chr6 171115067 + 5268003 5269166 L1PA5 6144 - 566 1730 35607 284 1 0 358 0 1 287 0 1 233 chain 45072 chr6 171115067 + 5269179 5269703 L1PA5 6144 + 5591 6144 62967 72 0 1 367 0 28 85 chain 19236 chr6 171115067 + 5299840 5300067 L1PA6 6164 - 70 297 129420 227 chain 34816 chr6 171115067 + 5323978 5324448 LTR19A 502 + 0 502 76449 34 4 3 137 4 3 44 0 36 38 7 6 39 1 0 162 chain 23639 chr6 171115067 + 5342723 5343010 AluSp 311 + 20 305 112359 261 3 1 23 chain 10558 chr6 171115067 + 5352318 5352484 MER30 238 + 62 238 158013 32 4 17 10 4 0 12 2 0 64 1 4 37 chain 12808 chr6 171115067 + 5405337 5405498 Tigger4b 360 - 77 238 149025 161 chain 23782 chr6 171115067 + 5415044 5415349 AluSg7 307 - 5 307 111585 159 14 11 132 chain 18267 chr6 171115067 + 5422222 5422557 THE1B 368 - 0 368 132159 49 13 21 55 35 45 24 3 2 58 0 1 30 24 39 44 chain 4307 chr6 171115067 + 5460633 5460713 LTR67B 553 - 23 104 203128 28 15 16 37 chain 15281 chr6 171115067 + 5505700 5505891 MER11C 1089 - 799 1089 140536 35 0 9 19 0 90 137 chain 27875 chr6 171115067 + 5545688 5546043 L1PA8 5853 - 0 348 93436 93 1 0 19 2 1 51 1 0 7 1 0 74 2 0 46 1 0 57 chain 28533 chr6 171115067 + 5548153 5548507 THE1A 353 - 0 353 91035 243 1 0 110 chain 22633 chr6 171115067 + 5549419 5549685 L1PA6 6164 - 2 268 117412 266 chain 8604 chr6 171115067 + 5550219 5550452 MLT1D-int 1367 - 94 344 167709 41 33 43 13 2 12 6 11 0 45 4 0 6 32 44 40 chain 13618 chr6 171115067 + 5563028 5563208 AluSq2 311 - 0 182 145907 44 3 5 133 chain 150959 chr6 171115067 + 5564255 5566343 HUERS-P3b-int 2065 - 13 2050 24483 13 32 8 90 1 0 58 6 1 63 4 1 17 2 0 72 3 1 34 3 0 10 2 1 45 1 0 24 1 0 12 3 1 80 8 6 44 1 0 53 0 2 28 1 2 165 0 1 31 4 0 339 12 11 11 1 0 51 2 1 18 0 4 67 4 0 66 0 1 40 0 1 261 0 1 223 3 0 79 chain 30372 chr6 171115067 + 5576385 5576915 MLT2A1 477 + 2 477 83735 167 4 1 25 2 0 115 4 5 56 0 1 13 108 52 30 0 4 6 chain 30622 chr6 171115067 + 5683850 5684279 L1PA8 5853 - 0 423 83165 33 11 12 48 1 0 19 5 4 40 9 8 7 1 0 74 2 0 46 1 0 132 chain 543594 chr6 171115067 + 5686433 5692569 L1PA4 6152 - 0 6152 2257 5 3 0 541 0 1 297 0 4 675 1 0 1516 0 3 741 0 1 129 0 1 930 0 9 728 8 9 562 chain 10666 chr6 171115067 + 5706299 5706438 MER1B 344 - 78 214 157540 129 3 0 7 chain 7260 chr6 171115067 + 5720878 5720974 Charlie1a 1436 - 18 113 175710 55 1 0 40 chain 20723 chr6 171115067 + 5755436 5755738 L1PA7 6471 - 3 315 124881 50 12 22 64 0 14 8 30 16 138 chain 99986 chr6 171115067 + 5779702 5780858 L1PA6 6164 - 4 1157 36783 334 1 0 20 3 1 798 chain 28235 chr6 171115067 + 5795549 5795893 THE1A 353 - 11 353 92174 232 4 3 75 1 0 32 chain 126491 chr6 171115067 + 5795893 5797468 THE1A-int 1579 - 0 1579 28946 261 0 3 5 1 2 4 1 0 286 0 1 66 0 1 807 0 1 58 18 17 22 5 4 41 chain 27256 chr6 171115067 + 5797468 5797819 THE1A 353 - 0 353 95413 17 3 6 222 1 0 108 chain 17463 chr6 171115067 + 5805546 5805813 THE1D 372 + 103 371 134351 63 32 34 25 2 1 145 chain 13053 chr6 171115067 + 5825712 5825913 MER47A 366 + 67 271 148022 17 10 11 110 16 18 48 chain 3631 chr6 171115067 + 5831171 5831212 MIRb 242 - 116 157 213122 41 chain 155212 chr6 171115067 + 5835119 5836932 SVA_D 2077 - 3 2077 23958 673 4 0 13 7 72 97 33 0 8 33 0 137 0 223 124 0 3 74 0 40 610 chain 2467 chr6 171115067 + 5835913 5835946 SVA_D 2077 - 985 1085 125165 26 0 67 7 chain 20967 chr6 171115067 + 5852962 5853274 AluSc 308 + 8 288 124044 114 11 0 9 23 1 40 1 2 114 chain 112529 chr6 171115067 + 5858154 5859408 L1PA5 6144 - 0 1253 33526 259 1 0 994 chain 3474 chr6 171115067 + 5862989 5863051 MIR 256 - 96 159 215744 29 12 13 21 chain 546213 chr6 171115067 + 5886392 5892646 L1PA2 6032 - 2 6029 1920 56 0 4 853 13 15 2438 0 4 947 54 0 1388 183 0 69 1 0 183 0 1 69 chain 14669 chr6 171115067 + 5892159 5892324 AluYb8 318 - 5 165 142365 16 5 0 144 chain 536323 chr6 171115067 + 5911954 5918544 L1PA7 6471 - 2 6466 3407 102 126 3 40 1 0 357 8 9 284 3 1 50 3 2 82 18 5 139 0 1 308 0 1 40 0 1 781 7 6 45 0 2 208 1 0 390 0 1 977 0 2 514 0 3 517 0 3 106 0 6 84 1 4 510 0 2 413 0 1 66 17 6 392 chain 3461 chr6 171115067 + 5923134 5923173 U5 65 + 5 44 215979 39 chain 14118 chr6 171115067 + 5968540 5968695 L1PA6 6164 + 6007 6161 144146 145 1 0 9 chain 4030 chr6 171115067 + 5968828 5968898 MER5B 177 + 19 86 206930 22 16 13 32 chain 3324 chr6 171115067 + 5975518 5975555 MER83 447 + 0 37 218498 37 chain 28078 chr6 171115067 + 6028042 6028469 LTR7 482 - 0 482 92719 49 12 14 35 0 2 15 1 2 59 0 1 8 0 31 43 1 12 45 21 28 138 chain 290503 chr6 171115067 + 6029722 6033417 HERVH-int 3825 - 0 3825 13989 225 3 8 143 1 4 5 3 0 109 1 211 31 0 3 1061 0 10 299 4 31 243 0 1 218 15 0 441 0 3 10 26 29 14 1 0 6 5 6 15 2 1 26 3 2 14 0 37 15 28 0 24 65 0 10 65 0 38 5 0 305 4 15 212 chain 2422 chr6 171115067 + 6032661 6032688 HERVH-int 3825 - 3142 3169 210860 27 chain 3634 chr6 171115067 + 6032715 6032778 HERVH-int 3825 - 3246 3303 166837 9 1 0 38 5 0 10 chain 2999 chr6 171115067 + 6032801 6032853 HERVH-int 3825 - 3325 3375 166837 12 2 0 38 chain 39859 chr6 171115067 + 6036331 6036781 LTR7 482 - 0 482 69520 187 0 31 38 0 1 225 chain 193719 chr6 171115067 + 6037742 6039931 L1PA4 6152 - 0 2195 19708 6 0 5 140 7 0 6 9 16 86 0 1 1935 chain 26187 chr6 171115067 + 6061093 6061425 L1PB1 5432 - 514 848 99251 26 0 1 269 0 1 37 chain 206697 chr6 171115067 + 6065194 6067669 HERVK9-int 4720 - 1904 4386 18740 72 0 1 87 8 0 675 3 4 64 0 1 798 1 0 299 0 13 468 chain 34381 chr6 171115067 + 6068337 6068827 MER9a3 513 - 0 513 77092 50 0 8 19 2 3 128 1 11 34 5 4 64 12 13 67 4 5 74 0 1 12 0 2 18 chain 29048 chr6 171115067 + 6068853 6069179 AluYa5 310 - 0 310 88768 16 16 0 294 chain 279863 chr6 171115067 + 6069179 6073108 L1P2 5180 - 1559 5178 14647 323 0 1 63 0 4 137 317 4 147 0 1 747 0 4 77 2 1 362 7 11 229 2 1 707 0 15 222 1 0 50 1 0 68 19 0 150 54 53 39 8 7 48 1 0 148 chain 8913 chr6 171115067 + 6099744 6099870 L1PREC2 3366 - 670 787 166071 63 9 0 54 chain 211562 chr6 171115067 + 6099931 6102283 L1PA4 6152 - 16 2370 18392 478 0 1 51 0 1 1823 chain 25817 chr6 171115067 + 6107449 6107856 L1MA1 4479 - 319 744 100800 11 1 0 7 1 0 22 15 13 29 1 0 94 15 39 86 1 0 14 2 0 19 1 0 50 0 4 17 1 0 20 chain 345909 chr6 171115067 + 6114441 6118927 L1PA7 6471 - 2 4486 11732 11 0 2 259 3 0 131 0 1 445 11 14 161 0 15 820 0 1 30 0 1 7 9 8 701 1 13 95 5 6 14 33 1 6 0 2 143 0 1 4 1 0 29 0 4 56 26 17 76 0 1 4 1 0 695 5 4 170 6 8 24 3 2 467 1 2 33 chain 18238 chr6 171115067 + 6119397 6119655 AluSc 308 - 27 285 132239 81 6 5 18 1 2 15 1 2 27 1 0 108 chain 240383 chr6 171115067 + 6141166 6143819 L1PA3long 6157 - 0 2659 16749 15 3 4 1780 0 4 269 0 1 586 chain 541313 chr6 171115067 + 6185373 6191482 L1PA3long 6157 - 8 6157 2620 175 3 0 22 89 1 1288 1 0 505 0 3 466 2 1 526 0 1 2255 10 138 614 0 1 153 chain 545178 chr6 171115067 + 6211899 6217916 L1PA3long 6157 + 0 6152 2053 152 0 1 628 0 128 945 0 1 2230 0 1 268 0 4 1794 chain 3754 chr6 171115067 + 6266173 6266218 MADE1 96 + 2 47 211078 45 chain 41735 chr6 171115067 + 6272844 6273374 MER41D 557 + 19 549 66981 530 chain 22602 chr6 171115067 + 6277355 6277597 AluYa5 310 + 69 310 117581 54 1 0 187 chain 27801 chr6 171115067 + 6294368 6294731 MLT2A1 477 + 0 385 93691 17 0 4 39 1 15 67 0 1 25 1 5 201 1 0 11 chain 543081 chr6 171115067 + 6294980 6300999 L1PA3long 6157 - 1 6157 2328 5247 0 128 223 0 7 398 0 1 80 1 2 70 chain 3547 chr6 171115067 + 6303816 6303877 L1MA7 2200 - 111 161 214588 39 11 0 11 chain 17633 chr6 171115067 + 6363651 6363893 MER75B 242 + 0 238 133901 17 1 2 169 0 1 30 6 0 19 chain 4068 chr6 171115067 + 6368842 6368888 MADE1 96 - 50 96 206347 46 chain 351321 chr6 171115067 + 6371535 6376418 L1PB1 5432 + 502 5369 11559 22 54 56 185 3 0 6 0 3 367 1 0 192 14 24 7 0 1 40 2 5 256 0 2 367 1 2 464 1 0 43 0 2 270 6 0 24 1 2 38 0 1 405 1 0 4 0 1 97 0 1 223 3 1 103 5 7 269 1 0 435 11 21 95 0 1 20 10 13 51 0 1 351 1 2 77 7 6 38 1 2 7 18 0 17 17 15 13 6 2 9 2 0 52 2 1 14 2 1 45 41 27 19 8 5 14 2 0 23 chain 5605 chr6 171115067 + 6390098 6390166 L1PA5 6144 - 5 73 189036 68 chain 322139 chr6 171115067 + 6426832 6430456 L1PA5 6144 + 2504 6141 12517 406 4 0 266 1 0 268 0 17 215 2 0 1845 0 2 473 0 1 144 chain 35960 chr6 171115067 + 6442519 6442915 L1PA3long 6157 - 727 1122 74945 130 1 0 265 chain 65325 chr6 171115067 + 6442915 6443632 L1PA3long 6157 + 5423 6140 50412 717 chain 56364 chr6 171115067 + 6446031 6446766 L1PA8 5853 - 0 728 54926 91 7 6 15 2 1 51 2 1 6 1 0 69 9 7 41 2 1 439 chain 19285 chr6 171115067 + 6446766 6447017 L1PA8 5853 + 4860 5102 129272 145 7 0 4 2 0 93 chain 11662 chr6 171115067 + 6454997 6455210 L1PA8 5853 - 1 215 153632 89 6 5 17 2 1 33 39 42 27 chain 29398 chr6 171115067 + 6460175 6460713 L1PB1 5432 + 4906 5420 87085 108 4 6 83 13 11 20 1 0 10 18 13 10 2 0 53 2 1 15 5 4 41 1 0 15 1 0 4 13 9 18 3 1 4 1 0 11 6 4 23 1 0 21 1 0 13 1 0 16 chain 30108 chr6 171115067 + 6462950 6463335 MER41B 635 + 165 549 84463 291 13 12 81 chain 20502 chr6 171115067 + 6463825 6464151 THE1D 372 + 1 332 125626 12 0 2 17 1 0 36 27 29 73 3 4 10 7 9 62 1 0 77 chain 5085 chr6 171115067 + 6473281 6473370 MADE1 96 - 0 94 194233 39 4 20 24 11 0 11 chain 58613 chr6 171115067 + 6477914 6478685 MER4E1 777 + 0 777 53633 184 0 1 44 4 5 92 3 1 101 0 1 113 12 17 17 7 6 13 0 1 181 chain 52432 chr6 171115067 + 6479236 6479827 LTR10C 591 - 0 591 57334 591 chain 9658 chr6 171115067 + 6521849 6521973 L1MB2 1706 + 1374 1498 162307 124 chain 17382 chr6 171115067 + 6523525 6523727 L1PA5 6144 - 172 375 134556 166 0 1 36 chain 10501 chr6 171115067 + 6523728 6523848 L1PA5 6144 + 6012 6132 158243 120 chain 19425 chr6 171115067 + 6544972 6545218 AluSg 306 + 53 293 128884 163 8 0 57 0 2 18 chain 10296 chr6 171115067 + 6561034 6561401 Tigger7 736 - 226 609 159154 15 2 0 36 63 65 36 22 31 42 80 87 26 7 8 11 3 2 24 chain 3306 chr6 171115067 + 6566892 6566929 MER3 215 + 66 103 218845 37 chain 22471 chr6 171115067 + 6580481 6580817 THE1B 368 - 0 368 118153 24 1 2 170 1 0 9 13 16 64 10 39 44 chain 32015 chr6 171115067 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186724 39 chain 3768 chr6 171115067 + 6755868 6755927 MER33 330 + 232 286 210832 10 7 0 5 0 2 37 chain 15444 chr6 171115067 + 6762438 6762623 LTR12C 1709 - 592 777 140071 5 1 0 134 0 1 45 chain 21051 chr6 171115067 + 6763988 6764239 L1PA6 6164 - 2 253 123722 146 0 1 8 1 0 96 chain 114361 chr6 171115067 + 6777515 6778786 L1PA4 6152 + 4880 6151 32977 444 0 1 573 1 0 253 chain 3771 chr6 171115067 + 6780935 6780983 L1PA8 5853 - 0 48 210794 48 chain 21243 chr6 171115067 + 6828122 6828380 AluSc8 310 + 18 279 123045 114 0 3 144 chain 7196 chr6 171115067 + 6864498 6864677 MLT1A0 366 + 62 233 176101 82 1 0 4 74 67 18 chain 6001 chr6 171115067 + 6870913 6870996 MER63A 208 - 48 127 185238 11 5 1 67 chain 67133 chr6 171115067 + 6877788 6878551 L1PA6 6164 + 5397 6160 49596 763 chain 18079 chr6 171115067 + 6940789 6941019 LTR12C 1709 + 768 1037 132650 7 1 0 8 1 0 34 0 1 19 1 0 139 0 41 20 chain 162661 chr6 171115067 + 6944590 6946464 L1PA6 6164 - 8 1902 22983 335 0 13 492 0 1 245 4 1 680 0 1 23 1 9 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136 21 20 88 0 11 26 4 0 9 chain 8076 chr6 171115067 + 7099472 7099650 MER20 218 - 40 218 170608 24 7 6 51 11 12 7 1 0 11 1 0 25 22 24 18 chain 19994 chr6 171115067 + 7102502 7102772 AluSp 311 + 11 296 127163 33 14 29 203 6 6 14 chain 25649 chr6 171115067 + 7160910 7161216 AluSc5 308 - 1 308 101503 188 0 1 118 chain 6776 chr6 171115067 + 7187823 7187922 HY1 111 - 7 111 179134 46 8 13 45 chain 28836 chr6 171115067 + 7221393 7221704 AluYb8 318 - 11 318 89744 184 4 0 123 chain 2797 chr6 171115067 + 7254654 7254687 MER5A1 166 + 33 67 228790 12 0 1 21 chain 25184 chr6 171115067 + 7309740 7310095 THE1C 375 + 6 364 103829 53 9 11 64 1 5 29 1 0 16 1 0 165 1 0 15 chain 64432 chr6 171115067 + 7314946 7317513 LTR12E 1234 - 16 1226 50824 70 0 8 18 21 13 12 87 0 79 0 15 27 0 8 11 1289 13 23 5 8 14 44 50 13 14 39 16 0 1 10 111 0 14 31 0 263 0 37 45 39 82 39 7 17 265 chain 15987 chr6 171115067 + 7315876 7316392 LTR12C 1709 + 769 1645 138390 48 0 40 75 50 0 54 177 518 37 49 78 26 chain 4814 chr6 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1692 41546 24 30 39 275 14 57 65 23 25 200 55 14 56 0 2 80 1 0 218 16 63 90 23 0 16 11 4 53 42 40 20 127 127 22 12 11 25 17 149 17 chain 4192 chr6 171115067 + 7426473 7426528 LTR12C 1709 + 804 858 92549 33 1 0 21 chain 24802 chr6 171115067 + 7440534 7440830 AluSc 308 + 0 295 105878 88 1 0 207 chain 5644 chr6 171115067 + 7441918 7441986 LTR12C 1709 + 769 837 188621 68 chain 21913 chr6 171115067 + 7441987 7442262 LTR12C 1709 + 837 1112 120577 275 chain 1427 chr6 171115067 + 7442299 7442347 LTR12C 1709 + 1118 1203 156208 15 14 51 19 chain 2624 chr6 171115067 + 7442347 7442377 LTR12C 1709 + 677 707 231386 30 chain 20719 chr6 171115067 + 7447624 7448271 MER51B 395 - 8 395 124894 52 0 4 22 4 15 16 324 0 33 1 0 55 0 12 61 0 19 32 7 26 40 chain 1465 chr6 171115067 + 7457020 7457059 LTR12C 1709 + 928 968 166705 35 0 1 4 chain 14787 chr6 171115067 + 7457060 7457559 LTR12C 1709 + 809 1037 141980 28 118 0 48 43 6 12 41 0 89 0 2 19 77 0 24 chain 3004 chr6 171115067 + 7457109 7457190 LTR12C 1709 + 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171115067 + 7949537 7949607 THE1B 368 + 297 368 186478 50 0 1 20 chain 5891 chr6 171115067 + 7992895 7993001 X6B_LINE 212 - 18 123 186275 56 19 18 31 chain 4469 chr6 171115067 + 8001437 8001539 MIR 256 - 56 151 201123 35 37 30 30 chain 7638 chr6 171115067 + 8004361 8004521 L1PB1 5432 - 42 184 173301 20 1 0 24 2 0 14 1 0 5 3 1 14 30 19 14 1 0 31 chain 29550 chr6 171115067 + 8022806 8023116 AluYa5 310 - 0 310 86416 310 chain 188952 chr6 171115067 + 8032692 8034852 L1PA6 6164 + 3985 6149 20150 1965 0 1 104 0 3 91 chain 33778 chr6 171115067 + 8034857 8035545 L1PB1 5432 + 4810 5422 77972 7 11 0 286 1 2 9 55 0 24 1 0 8 1 0 12 5 1 9 7 5 47 3 1 9 7 6 22 27 26 12 3 0 8 16 7 15 3 1 5 1 0 7 0 18 13 1 0 23 13 11 4 0 1 13 chain 27400 chr6 171115067 + 8044005 8044672 THE1A 353 + 0 353 94968 110 1 0 39 0 8 62 1 0 10 320 0 124 chain 126247 chr6 171115067 + 8044672 8046250 THE1A-int 1579 + 0 1579 29018 478 18 18 167 0 1 165 1 2 650 1 0 98 chain 28219 chr6 171115067 + 8046252 8046605 THE1A 353 + 2 353 92236 277 2 0 74 chain 75751 chr6 171115067 + 8051439 8053267 Tigger1 2417 + 621 1861 45620 182 14 9 74 21 37 27 0 1 85 0 3 217 0 8 81 0 9 11 391 79 33 4 9 172 29 29 51 314 0 32 7 8 83 chain 32028 chr6 171115067 + 8089532 8089971 MLT2A1 477 - 0 477 80822 37 11 49 6 4 0 108 1 0 103 1 5 124 3 4 41 chain 3131 chr6 171115067 + 8092632 8092668 Tigger2 2703 + 2413 2449 222351 36 chain 4351 chr6 171115067 + 8126286 8126371 L1PA17 2846 + 2610 2693 202577 13 21 20 7 1 0 43 chain 98068 chr6 171115067 + 8164388 8165596 LTR12C 1709 + 0 1500 37261 286 0 4 420 0 200 16 0 55 131 1 0 5 3 1 106 0 4 53 0 1 62 0 30 76 12 13 37 chain 30183 chr6 171115067 + 8165606 8165924 AluYb8 318 + 0 318 84238 318 chain 65106 chr6 171115067 + 8186075 8187384 L1PA11 4918 - 292 1242 50524 15 59 44 13 1 0 13 15 11 10 20 11 6 0 1 13 1 0 14 2 0 56 317 0 12 2 0 12 1 0 61 4 0 3 2 0 600 4 1 39 0 1 14 chain 69775 chr6 171115067 + 8198026 8199066 L1PB2 3958 - 120 1149 48482 46 19 18 21 6 4 70 1 0 62 1 0 72 1 0 73 0 2 17 5 1 13 2 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171115067 + 9041458 9041736 LTR12C 1709 + 719 1037 121962 118 1 0 139 0 41 20 chain 29514 chr6 171115067 + 9075298 9075608 AluYg6 310 - 0 310 86592 310 chain 2995 chr6 171115067 + 9110885 9110932 L1ME3A 1206 + 783 828 225122 22 2 0 23 chain 50330 chr6 171115067 + 9114382 9114963 L1PA6 6164 - 2 583 58765 581 chain 28620 chr6 171115067 + 9145722 9146100 MLT2A1 477 + 0 385 90656 48 0 2 64 1 0 6 0 1 17 0 1 23 7 11 212 chain 465695 chr6 171115067 + 9147005 9152664 HERVL-int 5654 + 1 5654 8199 467 0 1 135 0 1 131 0 1 301 0 2 428 44 9 357 20 21 51 0 1 210 0 8 766 10 8 648 0 1 204 0 3 298 0 1 8 4 0 47 3 1 1171 0 7 147 0 5 110 0 5 99 chain 32410 chr6 171115067 + 9152667 9153286 MLT2A1 477 + 3 477 80189 43 0 2 70 1 2 17 0 1 29 3 7 209 0 2 12 169 18 22 4 0 40 chain 3007 chr6 171115067 + 9153084 9153121 HERVL-int 5654 + 5459 5495 224915 32 1 0 4 chain 68343 chr6 171115067 + 9160490 9161277 L1PA7 6471 + 5663 6460 49106 521 0 9 122 0 1 144 chain 27130 chr6 171115067 + 9180066 9180450 MLT2A1 477 - 92 477 95834 84 7 9 87 4 5 14 3 4 12 4 1 79 0 1 5 1 0 84 chain 43654 chr6 171115067 + 9184920 9185427 MER9a3 513 + 0 513 64625 482 6 12 19 chain 514642 chr6 171115067 + 9213728 9220843 L1PA6 6164 + 4 6161 5711 450 0 4 59 0 2 48 1 0 60 24 25 135 0 17 277 0 5 170 2 0 945 0 1 124 0 11 538 673 2 261 319 0 16 0 3 21 1 0 86 0 5 64 0 10 72 0 1 1065 0 1 146 26 0 1262 0 1 270 chain 56618 chr6 171115067 + 9216582 9217234 L1PA5 6144 - 6 660 54764 259 0 1 6 0 1 387 chain 23644 chr6 171115067 + 9263731 9263985 AluYa5 310 - 2 255 112341 182 1 0 71 chain 33856 chr6 171115067 + 9268421 9268799 L1PA4 6152 - 6 385 77846 142 0 1 236 chain 4563 chr6 171115067 + 9276393 9276449 MLT2B4 540 - 484 540 200079 56 chain 113043 chr6 171115067 + 9289848 9291232 LTR12C 1709 - 0 1709 33364 103 0 29 8 30 0 264 2 1 76 0 4 106 3 0 6 1 0 23 0 319 280 0 3 50 0 1 146 0 4 286 chain 153787 chr6 171115067 + 9294022 9296049 L1PA8 5853 - 113 2120 24114 35 62 37 60 2 0 36 9 8 70 0 11 474 0 2 288 4 5 267 0 1 34 8 9 32 2 1 30 4 0 125 1 0 73 1 2 88 3 0 319 chain 133750 chr6 171115067 + 9326845 9328325 L1PA4 6152 + 4672 6152 27266 1480 chain 20711 chr6 171115067 + 9368799 9369057 MER41B 635 - 375 635 124927 81 1 0 13 0 2 35 0 1 128 chain 11057 chr6 171115067 + 9436959 9437118 L1PA8 5853 + 5696 5853 155978 44 3 2 17 3 2 92 chain 534948 chr6 171115067 + 9443980 9450109 L1PA5 6144 + 3 6142 3602 838 0 1 710 1 3 13 0 3 1206 0 2 391 1 0 435 8 7 1344 0 4 334 1 0 516 0 1 331 chain 29902 chr6 171115067 + 9460392 9460717 AluYb8 318 + 0 318 85089 118 7 0 200 chain 29231 chr6 171115067 + 9494688 9494998 AluYa5 310 - 1 310 87902 183 1 0 126 chain 5437 chr6 171115067 + 9500278 9500361 Tigger4a 237 - 0 235 190642 53 5 157 25 chain 42984 chr6 171115067 + 9504914 9505469 MER41A 554 + 0 554 65433 171 1 0 222 4 1 36 1 2 18 0 2 102 chain 2965 chr6 171115067 + 9511510 9511541 MER33 330 - 292 323 225769 31 chain 22644 chr6 171115067 + 9512698 9512950 L1PA5 6144 - 1224 1476 116902 252 chain 105428 chr6 171115067 + 9512950 9514141 L1PA5 6144 + 4942 6132 35393 869 1 0 321 chain 164819 chr6 171115067 + 9549998 9552057 HERVL-int 5654 + 3062 5068 22673 330 53 0 774 1 0 334 4 5 228 1 0 24 1 7 8 6 0 288 0 1 7 chain 11739 chr6 171115067 + 9552891 9553033 THE1C-int 1605 + 265 407 153307 142 chain 61516 chr6 171115067 + 9572445 9573167 L1PA6 6164 + 5442 6162 52109 705 1 0 5 1 0 10 chain 125273 chr6 171115067 + 9588647 9590059 L1PA4 6152 + 4727 6143 29305 499 1 2 66 0 1 427 1 3 275 0 2 3 2 0 138 chain 37035 chr6 171115067 + 9653202 9653667 LTR12F 595 - 0 595 73475 356 11 136 42 0 4 31 0 1 25 chain 22545 chr6 171115067 + 9665027 9665386 THE1D 372 + 24 372 117825 27 18 0 18 9 10 87 26 29 30 1 0 82 0 1 33 0 3 28 chain 58345 chr6 171115067 + 9668391 9669139 LTR12 884 + 4 882 53779 70 0 132 172 2 0 17 1 0 53 3 0 7 10 13 360 0 1 53 chain 63075 chr6 171115067 + 9680760 9681754 MER11B 1079 - 37 1079 51415 216 95 133 98 5 0 8 19 25 37 0 1 16 24 12 22 18 17 124 0 17 91 1 6 96 1 0 123 chain 384560 chr6 171115067 + 9683815 9688031 L1PA3long 6157 + 1941 6157 10626 877 0 1 79 1 0 3259 chain 92009 chr6 171115067 + 9693114 9694236 L1PA8A 6298 - 16 1142 38814 354 0 1 83 0 3 5 3 0 343 1 4 333 chain 123343 chr6 171115067 + 9694236 9695740 L1PA8A 6298 + 3624 5138 29933 206 0 1 40 1 0 107 12 13 49 7 12 397 0 3 107 7 8 571 chain 60001 chr6 171115067 + 9722193 9722921 LTR12 884 + 0 884 52823 119 0 157 101 2 0 125 0 1 381 chain 250876 chr6 171115067 + 9722949 9726143 HERV9-int 5642 + 0 4824 16186 186 0 1 415 0 1 120 9 0 65 1 0 251 160 0 67 3 0 83 0 3 52 1 0 167 0 3 84 0 1 1341 0 1795 189 chain 4695 chr6 171115067 + 9724084 9724140 HERV9-int 5642 + 1047 1103 198583 56 chain 52646 chr6 171115067 + 9727849 9728644 LTR12 884 + 32 884 57215 77 1 2 44 10 142 81 11 33 229 98 0 244 chain 54539 chr6 171115067 + 9748597 9749218 L1PA7 6471 + 5848 6469 56006 621 chain 15623 chr6 171115067 + 9789331 9789529 L1PA7 6471 - 1 194 139510 6 5 0 187 chain 15838 chr6 171115067 + 9801069 9801279 MER44A 345 - 93 316 138832 143 0 8 21 0 5 46 chain 25244 chr6 171115067 + 9805089 9805387 AluY 311 + 4 300 103504 127 3 0 124 0 1 44 chain 541322 chr6 171115067 + 9810985 9817007 L1PA3long 6157 + 0 6157 2617 152 7 8 95 0 1 301 0 1 219 1 129 101 0 1 2207 2 0 2089 0 4 423 0 1 425 chain 3749 chr6 171115067 + 9844982 9845131 MER20 218 - 40 188 211152 15 91 90 43 chain 12071 chr6 171115067 + 9856511 9856666 Tigger1 2417 - 503 660 151899 86 0 2 69 chain 77597 chr6 171115067 + 9867727 9869129 L1PA8 5853 - 0 1086 44693 93 1 0 7 394 85 56 14 12 36 1 0 555 5 3 143 2 1 95 chain 15053 chr6 171115067 + 9869129 9869305 L1PA8 5853 + 4559 4735 140210 176 chain 196197 chr6 171115067 + 9871410 9873649 L1PA5 6144 + 3885 6144 19486 308 0 6 1233 2 18 441 1 0 235 1 0 18 chain 57074 chr6 171115067 + 9877201 9877889 L1PA6 6164 - 8 697 54489 136 1 2 551 chain 539084 chr6 171115067 + 9882556 9888680 L1PA5 6144 + 3 6144 2972 1491 1 0 322 2 1 410 0 1 78 2 0 890 1 2 288 0 4 185 1 5 52 0 1 4 1 0 1560 0 6 60 5 11 517 1 0 253 chain 22734 chr6 171115067 + 9913668 9914050 L1PA8 5853 - 6 392 116903 47 40 44 15 2 1 38 0 7 6 5 0 10 1 0 71 2 0 44 1 0 80 0 3 20 chain 118827 chr6 171115067 + 9928598 9930273 L1PA13 3608 + 1848 3497 31478 171 11 14 109 0 10 156 11 0 27 12 2 17 1 0 62 7 6 345 3 5 227 7 6 77 1 0 47 10 4 19 1 0 8 7 6 106 2 0 62 1 0 55 1 0 7 2 0 48 8 4 20 1 0 20 0 3 6 chain 10576 chr6 171115067 + 9942909 9943038 LTR12C 1709 + 784 912 157933 53 1 0 75 chain 3107 chr6 171115067 + 9943088 9943122 LTR12C 1709 + 684 718 222791 34 chain 71142 chr6 171115067 + 9963075 9963896 L1PA5 6144 + 5312 6139 47869 404 0 4 110 0 1 73 0 1 234 chain 552506 chr6 171115067 + 9966277 9972282 L1PA2 6032 - 7 6027 1130 845 0 4 962 2 4 2130 0 2 1250 0 4 327 0 6 180 1 0 15 1 0 106 1 0 185 chain 6497 chr6 171115067 + 10002357 10002543 L1PREC2 3366 - 318 478 181280 38 20 18 22 15 1 17 3 0 21 13 11 13 7 2 17 chain 9270 chr6 171115067 + 10002567 10002695 L1PREC2 3366 + 2717 2844 164221 35 2 0 40 0 2 13 1 0 37 chain 37956 chr6 171115067 + 10015293 10015730 L1PA7 6471 - 2 439 72199 437 chain 29384 chr6 171115067 + 10021405 10021776 L1P2 5180 - 4264 4649 87145 118 0 15 220 1 0 32 chain 31373 chr6 171115067 + 10040481 10040908 LTR12F 595 + 0 595 81868 25 0 1 54 0 167 117 0 1 27 23 22 181 chain 8322 chr6 171115067 + 10040908 10041061 MLT1A1 405 - 28 207 169270 76 15 17 17 1 0 22 10 35 12 chain 105240 chr6 171115067 + 10073952 10075474 LTR12C 1709 - 13 1709 35441 61 25 23 23 1 0 41 1 0 6 8 8 29 1 0 63 1 0 46 0 2 30 8 1 40 16 32 37 0 1 25 11 4 15 24 0 76 0 47 249 1 0 68 0 120 75 0 1 192 0 43 42 6 7 10 13 1 278 chain 13511 chr6 171115067 + 10115272 10115414 AluYd8 298 - 7 149 146321 142 chain 9426 chr6 171115067 + 10133769 10133969 Tigger3a 397 - 64 240 163429 48 29 32 11 17 0 71 12 2 12 chain 52723 chr6 171115067 + 10134197 10134822 L1P1 4361 + 1 629 57174 255 0 1 167 0 3 147 1 0 55 chain 59405 chr6 171115067 + 10134822 10135491 L1PA4 6152 + 5481 6151 53173 319 0 1 350 chain 34834 chr6 171115067 + 10138502 10138934 L1PA6 6164 + 5720 6160 76430 187 3 15 103 4 0 135 chain 6633 chr6 171115067 + 10146752 10146828 MLT1B 390 - 314 390 180215 76 chain 98370 chr6 171115067 + 10171750 10173240 LTR12C 1709 + 0 1709 37205 19 24 0 266 30 29 246 29 0 19 1 0 71 0 278 184 1 0 4 4 2 106 0 4 112 6 1 55 0 102 43 122 20 18 53 53 77 chain 38417 chr6 171115067 + 10187160 10187665 L1PA8 5853 + 5341 5853 71553 223 1 0 44 2 0 72 1 0 8 0 4 48 2 1 19 1 9 84 chain 29696 chr6 171115067 + 10199434 10199752 AluYb8 318 - 0 318 85847 318 chain 19326 chr6 171115067 + 10213600 10214029 L1PB1 5432 - 13 426 129160 11 5 4 13 1 0 21 1 0 17 12 11 10 1 0 5 3 1 15 9 0 15 3 0 13 5 4 42 5 17 48 6 4 9 2 0 3 2 0 9 6 5 4 1 0 23 14 12 87 0 2 8 chain 37214 chr6 171115067 + 10220209 10220761 MER1A 529 - 6 528 73220 102 16 0 18 22 9 26 8 0 276 9 16 75 chain 160151 chr6 171115067 + 10228773 10230533 L1PA3long 6157 + 4396 6157 23321 987 0 1 773 chain 46777 chr6 171115067 + 10230855 10231648 L1PB2 3958 + 3039 3838 61392 78 3 0 87 0 6 29 0 1 17 3 1 42 2 0 5 21 19 39 1 0 11 5 0 62 2 0 16 2 0 5 41 64 24 1 0 71 2 1 20 10 11 24 15 14 67 2 0 22 1 0 63 chain 24631 chr6 171115067 + 10249208 10249616 Tigger2b_Pri 1066 - 602 1011 106825 79 6 7 84 20 18 157 21 25 14 7 6 12 1 0 7 chain 23792 chr6 171115067 + 10253643 10253924 AluSp 311 - 19 300 111518 281 chain 40122 chr6 171115067 + 10263883 10264467 L1PA16 3655 - 174 737 69043 23 0 3 45 1 0 120 2 0 86 1 0 75 49 29 182 chain 132226 chr6 171115067 + 10264467 10266066 L1PA6 6164 - 2 1588 27581 9 1 0 460 10 0 378 1 0 217 0 2 82 30 26 210 0 1 201 chain 6926 chr6 171115067 + 10270064 10270148 L1PA8 5853 - 0 84 177988 84 chain 23102 chr6 171115067 + 10280821 10281111 AluY 311 + 15 295 115129 111 5 0 162 5 0 7 chain 28217 chr6 171115067 + 10281321 10281676 THE1A 353 - 0 353 92245 155 1 0 88 2 1 109 chain 22793 chr6 171115067 + 10292173 10292466 AluSp 311 + 11 295 116616 277 9 0 7 chain 24307 chr6 171115067 + 10299563 10299854 AluYf4 310 + 0 294 108623 80 0 2 123 1 2 87 chain 22215 chr6 171115067 + 10312413 10312695 AluSz 310 + 8 299 119284 92 0 8 19 1 0 6 2 0 135 0 4 27 chain 3821 chr6 171115067 + 10334544 10334585 L1HS 6032 + 5988 6029 210068 41 chain 113990 chr6 171115067 + 10337461 10338848 LTR12C 1709 + 0 1706 33098 104 5 4 684 1 319 6 2 0 107 0 4 478 chain 5410 chr6 171115067 + 10346345 10346471 Tigger2b_Pri 1066 - 0 125 190897 16 49 48 61 chain 90608 chr6 171115067 + 10440238 10441220 L1PA4 6152 - 1 983 39426 982 chain 51930 chr6 171115067 + 10459195 10459795 L1PA4 6152 - 0 593 57662 13 0 3 156 6 1 87 1 0 141 5 1 191 chain 2905 chr6 171115067 + 10482417 10482472 LTR12C 1709 - 996 1051 226976 18 12 12 25 chain 2117 chr6 171115067 + 10482540 10482785 LTR12C 1709 - 800 1009 237487 13 78 1 16 30 149 14 78 0 16 chain 662 chr6 171115067 + 10487587 10487622 LTR12C 1709 - 672 707 206970 35 chain 12793 chr6 171115067 + 10487635 10487934 LTR12C 1709 - 601 781 149087 39 119 0 77 0 2 49 1 0 6 1 0 7 chain 8272 chr6 171115067 + 10492089 10492190 LTR12D 1347 + 594 693 169557 52 2 0 47 chain 3238 chr6 171115067 + 10492224 10492278 LTR12D 1347 + 499 584 220283 31 6 37 17 chain 23981 chr6 171115067 + 10519904 10520207 AluSp 311 + 11 311 110436 121 2 0 44 0 1 119 2 0 15 chain 22781 chr6 171115067 + 10544562 10544841 AluSg7 307 + 7 285 116675 116 4 3 159 chain 20866 chr6 171115067 + 10551680 10551974 AluSg7 307 - 11 306 124406 132 33 34 129 chain 38639 chr6 171115067 + 10575788 10576287 LTR7 482 + 0 482 71235 117 1 0 63 48 0 50 0 31 104 1 2 115 chain 24753 chr6 171115067 + 10578675 10578978 AluYf5 307 - 3 307 106154 89 8 9 206 chain 7902 chr6 171115067 + 10579088 10579204 MER54A 897 - 729 840 171644 74 11 6 31 chain 4068 chr6 171115067 + 10598265 10598317 MIR3 191 + 79 130 206334 39 1 0 12 chain 36423 chr6 171115067 + 10615797 10617914 MER41A 554 - 1 554 74336 223 7 13 40 1 20 17 0 4 74 1 0 38 0 1 14 1594 0 14 1 2 93 chain 4849 chr6 171115067 + 10616786 10616886 LTR12C 1709 - 996 1059 196796 34 37 0 29 chain 17285 chr6 171115067 + 10616937 10617206 LTR12C 1709 - 506 781 134822 21 41 0 26 1 48 180 chain 3566 chr6 171115067 + 10618287 10618328 MER5A1 166 - 91 132 214215 41 chain 8229 chr6 171115067 + 10628824 10628944 MLT1A 405 + 18 142 169782 56 0 1 15 10 13 39 chain 13768 chr6 171115067 + 10652149 10652326 MER30 238 - 2 190 145370 22 0 1 92 5 15 58 chain 7780 chr6 171115067 + 10659083 10659187 MER34C_ 573 - 419 538 172421 51 3 18 50 chain 24681 chr6 171115067 + 10660721 10661097 LTR12C 1709 + 662 1037 106549 38 41 0 137 1 0 112 7 48 40 chain 8728 chr6 171115067 + 10662546 10662711 MER41B 635 + 11 170 167049 43 9 12 62 12 1 16 10 12 13 chain 250153 chr6 171115067 + 10664363 10668151 L1PA11 4918 - 340 4915 16242 11 2 0 13 1 0 15 13 9 10 8 3 9 4 0 20 1 0 13 2 0 67 3 1 13 6 5 49 0 1 7 21 14 119 11 10 117 0 3 251 13 15 142 0 1 138 307 0 36 8 11 343 12 15 437 0 3 32 6 0 103 12 0 17 0 1 4 4 0 152 1 5 47 1 5 13 0 4 26 7 20 39 0 1 344 1 0 49 1 2 185 0 4 20 0 4 156 0 1102 69 1 6 48 10 7 32 1 0 52 2 0 15 1 0 34 4 1 34 2 0 41 chain 9768 chr6 171115067 + 10687513 10687627 L1PA7 6471 + 6347 6470 161752 102 0 9 12 chain 37858 chr6 171115067 + 10691438 10691894 LTR2 463 - 0 463 72332 193 0 1 14 1 0 123 0 4 74 0 4 43 1 0 7 chain 12656 chr6 171115067 + 10693180 10693351 LTR10E 629 + 1 233 149621 17 1 0 111 0 2 20 6 66 16 chain 25339 chr6 171115067 + 10694209 10694512 AluSp 311 + 0 301 103027 36 1 0 89 1 0 176 chain 19779 chr6 171115067 + 10708776 10709010 L1PA4 6152 - 12 245 127872 92 1 0 141 chain 3305 chr6 171115067 + 10719553 10719593 LTR12D 1347 - 369 409 218890 40 chain 96339 chr6 171115067 + 10720652 10722295 LTR12C 1709 + 0 1532 37723 38 0 4 46 0 3 199 0 5 347 5 127 68 1 0 70 5 7 26 2 1 171 1 0 4 10 12 96 0 4 61 39 39 13 0 2 5 221 98 62 129 0 24 chain 2421 chr6 171115067 + 10721967 10722068 LTR12C 1709 + 1447 1546 189229 16 0 4 11 6 1 59 1 0 8 chain 14178 chr6 171115067 + 10733296 10733881 LTR12_ 688 - 146 610 143962 65 96 0 55 0 8 22 0 2 12 271 235 18 6 7 40 chain 8372 chr6 171115067 + 10736279 10736412 LTR8 732 + 11 156 169012 4 0 1 16 0 9 67 11 13 35 chain 17184 chr6 171115067 + 10741834 10742389 LTR12D 1347 + 587 1191 135079 57 41 0 14 37 0 32 0 18 44 192 303 20 28 26 90 chain 49163 chr6 171115067 + 10750515 10751076 LTR6B 557 - 0 557 59624 155 5 1 401 chain 9268 chr6 171115067 + 10778647 10778771 MER85 139 - 0 138 164228 39 0 10 36 1 5 48 chain 14310 chr6 171115067 + 10789673 10789888 MER44A 345 - 21 230 143536 62 9 11 10 8 0 126 chain 6526 chr6 171115067 + 10806109 10806221 MLT1C 463 - 294 400 181047 32 20 14 60 chain 23135 chr6 171115067 + 10808014 10808314 AluSq2 311 + 0 298 114971 41 4 0 92 0 1 128 3 4 32 chain 78966 chr6 171115067 + 10853661 10854708 MER11A 1151 + 0 1145 44076 61 1 100 25 0 7 12 1 0 4 0 1 20 0 4 60 4 0 32 0 2 112 5 6 92 0 1 147 1 4 145 25 8 77 0 1 24 0 1 21 1 0 16 0 1 161 chain 13222 chr6 171115067 + 10855599 10855841 MER52C 1267 + 122 485 147389 138 72 193 32 chain 37241 chr6 171115067 + 10866967 10867464 L1PA8 5853 + 5368 5853 73182 26 0 2 168 1 0 44 2 0 51 7 0 19 15 13 51 1 0 18 3 2 91 chain 11906 chr6 171115067 + 10869699 10869858 HUERS-P3b-int 2065 - 278 434 152578 59 4 2 89 1 0 6 chain 11637 chr6 171115067 + 10876883 10877012 AluSp 311 + 3 132 153743 129 chain 23987 chr6 171115067 + 10881406 10881690 AluSp 311 - 27 311 110401 284 chain 33407 chr6 171115067 + 10895511 10895936 LTR10D 510 - 72 510 78552 140 0 5 26 4 0 160 0 8 11 11 15 73 chain 192366 chr6 171115067 + 10915491 10918319 L1PBa 3878 - 130 2635 19824 12 2 0 20 2 1 436 7 8 50 4 1 168 2 3 339 0 3 400 323 0 32 5 4 29 9 8 474 0 4 114 44 37 49 14 19 116 0 1 4 2 1 115 0 1 56 chain 24035 chr6 171115067 + 10925230 10925571 THE1B 368 - 0 358 110139 126 1 0 10 1 0 18 0 4 10 1 0 4 1 11 16 1 0 27 5 12 120 chain 88024 chr6 171115067 + 10927596 10928679 MER11C 1089 - 26 1089 40364 325 0 1 45 0 4 371 0 4 58 0 9 16 0 5 33 47 3 51 0 1 137 chain 110216 chr6 171115067 + 10941248 10942519 L1PA4 6152 + 4853 6134 34153 451 0 4 217 5 0 356 0 2 8 4 9 193 0 4 37 chain 291995 chr6 171115067 + 10984595 10987828 L1PA3long 6157 - 0 3244 13903 607 5 2 170 1 0 70 0 4 255 0 13 71 0 1 644 1 0 71 0 1 942 0 1 378 4 0 14 chain 23329 chr6 171115067 + 10988525 10988804 AluSp 311 + 10 289 114036 279 chain 17684 chr6 171115067 + 10998131 10998512 MSTB 430 + 0 417 133738 73 1 0 15 13 9 29 69 88 8 0 12 42 14 13 14 1 6 48 10 16 44 chain 36862 chr6 171115067 + 11003383 11003839 L1PA8 5853 - 0 449 73712 93 1 0 19 2 1 47 1 0 16 2 1 66 2 0 46 1 0 36 1 0 119 0 1 4 chain 4685 chr6 171115067 + 11018766 11018893 MER5A1 166 - 6 138 198698 17 7 9 20 42 45 41 chain 32521 chr6 171115067 + 11049666 11050164 L1PB4 2604 - 178 667 79988 15 53 37 260 0 2 11 7 9 111 1 4 40 chain 2651 chr6 171115067 + 11055013 11055303 L1MC5 759 - 191 488 230999 25 3 2 8 1 0 5 225 234 23 chain 12494 chr6 171115067 + 11072925 11073127 THE1B 368 + 154 366 150268 15 1 0 29 34 45 123 chain 14421 chr6 171115067 + 11075526 11075741 Tigger4b 360 - 3 221 143148 39 8 1 10 0 6 5 2 1 65 1 6 85 chain 123438 chr6 171115067 + 11087268 11088814 LTR12C 1709 + 0 1709 29900 578 0 2 27 3 4 142 0 161 198 1 0 112 0 4 166 1 0 61 1 0 189 15 14 22 1 0 29 chain 23647 chr6 171115067 + 11117390 11117697 AluYa5 310 - 8 300 112325 5 3 0 174 13 0 25 9 10 78 chain 3023 chr6 171115067 + 11124058 11124093 L1MA4 2864 - 63 98 224575 35 chain 22492 chr6 171115067 + 11126588 11127014 L1M1 2793 - 1546 1984 118057 36 0 2 24 6 5 63 6 6 36 34 44 28 1 0 22 14 22 51 18 15 54 1 0 8 2 0 22 chain 16784 chr6 171115067 + 11127687 11128046 THE1A 353 - 0 352 136150 49 13 5 41 42 34 6 4 0 10 3 1 73 28 27 52 8 24 30 chain 3799 chr6 171115067 + 11147157 11147210 MLT1B 390 + 123 177 210405 23 0 2 22 1 0 7 chain 101561 chr6 171115067 + 11171125 11172491 LTR12C 1709 + 0 1709 36380 278 0 9 175 10 9 18 0 1 19 4 5 53 0 2 5 6 4 32 0 1 99 0 360 42 1 0 5 3 1 106 11 4 81 20 4 248 1 0 60 5 4 84 chain 9141 chr6 171115067 + 11179602 11179773 MSTD 398 + 210 383 164853 64 34 35 14 1 2 58 chain 6037 chr6 171115067 + 11249389 11249461 MLT2B4 540 + 125 197 184920 72 chain 23575 chr6 171115067 + 11284517 11284819 AluY 311 + 11 303 112708 112 13 3 177 chain 509390 chr6 171115067 + 11299103 11305196 L1PA6 6164 + 1 6162 6216 193 1 2 4 1 0 127 0 1 120 0 4 7 20 1 109 1 0 218 0 17 97 0 4 167 2 1 379 1 0 527 4 1 345 0 1 471 10 12 380 0 1 527 0 1 902 0 2 33 0 54 53 0 1 238 8 10 402 0 3 746 chain 28578 chr6 171115067 + 11322161 11322569 L1PA8 5853 + 5446 5847 90829 118 0 2 5 4 1 38 2 0 65 22 20 45 2 1 19 1 0 87 chain 22080 chr6 171115067 + 11326108 11326407 AluSx 319 + 13 308 119887 5 1 0 251 10 9 20 2 0 10 chain 97521 chr6 171115067 + 11334803 11336080 HSMAR1 1287 + 0 1287 37416 17 1 0 7 1 2 518 40 39 472 0 11 221 chain 9929 chr6 171115067 + 11337472 11337715 Tigger3b 1229 - 832 1097 160931 63 17 19 20 1 0 19 73 94 50 chain 89487 chr6 171115067 + 11347525 11348794 L1PA13 3608 + 2231 3488 39809 77 0 9 104 30 4 62 3 4 9 0 1 87 9 13 157 2 0 5 0 2 123 0 1 36 0 4 164 1 8 30 1 0 19 0 1 9 1 0 113 2 0 61 1 0 57 13 9 38 5 3 7 2 0 18 1 0 22 chain 22850 chr6 171115067 + 11360643 11361043 MSTA 426 + 0 426 116340 11 2 3 86 27 48 33 7 13 33 41 39 160 chain 33668 chr6 171115067 + 11372530 11373040 L1MA2 4263 - 150 650 78146 8 1 0 40 14 7 93 13 11 46 3 7 95 6 5 5 2 0 134 1 0 49 chain 25888 chr6 171115067 + 11387531 11387825 AluSp 311 - 20 311 100487 159 2 0 12 1 0 120 chain 26527 chr6 171115067 + 11395073 11395428 L1PA8 5853 + 5506 5853 97944 58 2 1 45 2 0 69 1 0 11 1 0 4 1 0 46 2 1 19 2 1 92 chain 31711 chr6 171115067 + 11400029 11400997 L1MA4 2864 + 2138 2801 81314 11 3 0 41 49 45 93 19 16 145 11 10 20 274 17 78 0 1 6 2 0 22 3 1 26 4 1 22 112 81 27 chain 2655 chr6 171115067 + 11402588 11402619 LTR12E 1234 - 494 525 191026 31 chain 5560 chr6 171115067 + 11402619 11402728 LTR12E 1234 - 406 474 189484 21 41 0 47 chain 3871 chr6 171115067 + 11416828 11416870 LTR12C 1709 - 991 1033 209297 42 chain 28813 chr6 171115067 + 11444349 11444651 AluYa5 310 - 8 310 89828 302 chain 9111 chr6 171115067 + 11444691 11444804 MSTA 426 - 272 384 165006 99 1 0 13 chain 512857 chr6 171115067 + 11452046 11458187 L1PA6 6164 + 0 6160 5896 194 20 20 11 13 14 70 13 16 129 22 20 234 1 0 6 0 1 737 0 1 274 0 1 412 0 3 182 11 0 295 0 3 259 0 1 637 0 1 370 0 1 67 0 1 162 0 5 184 0 1 51 0 8 255 4 0 655 5 8 27 1 5 82 0 1 185 0 2 399 4 3 159 3 0 8 chain 42207 chr6 171115067 + 11464405 11464867 L1PA3long 6157 + 5692 6157 66393 135 0 3 327 chain 98876 chr6 171115067 + 11505446 11506912 L1PA15 4387 + 2863 4316 37057 70 7 3 228 5 4 242 10 14 389 2 0 20 2 1 25 0 1 11 21 23 39 11 10 161 2 1 15 27 26 38 5 4 19 4 0 10 1 0 50 6 3 46 chain 24592 chr6 171115067 + 11534828 11535123 THE1B-int 1605 + 1310 1605 107033 295 chain 22771 chr6 171115067 + 11545984 11546268 AluY 311 + 26 305 116719 92 5 0 14 0 1 148 2 1 23 chain 6257 chr6 171115067 + 11547111 11547190 MER44A 345 - 85 164 183117 79 chain 88700 chr6 171115067 + 11548286 11549319 L1PA5 6144 + 5105 6142 40111 31 2 0 158 0 8 266 0 2 63 0 1 294 1 0 207 4 0 7 chain 21532 chr6 171115067 + 11580258 11580524 AluSp 311 - 23 290 122039 177 3 4 86 chain 50151 chr6 171115067 + 11587753 11588340 L1PA8A 6298 - 7 597 58905 254 0 1 155 0 2 178 chain 7567 chr6 171115067 + 11612185 11612278 MER45B 1037 + 771 864 173751 93 chain 136084 chr6 171115067 + 11623837 11625310 L1PA3long 6157 - 0 1474 26817 470 0 2 701 1 0 301 chain 6279 chr6 171115067 + 11636195 11636264 SVA_B 1603 + 1534 1603 182951 69 chain 42022 chr6 171115067 + 11680656 11681149 MER9a1 513 - 11 513 66594 42 1 0 409 0 10 41 chain 13611 chr6 171115067 + 11697241 11697563 THE1B 368 + 0 368 145932 44 10 39 80 10 9 26 103 121 49 chain 25621 chr6 171115067 + 11758677 11758961 L1PA4 6152 + 5865 6151 101617 142 0 2 142 chain 40549 chr6 171115067 + 11780861 11781404 MLT2A2 560 + 0 560 68512 249 4 0 189 33 50 62 0 4 6 chain 22304 chr6 171115067 + 11791501 11791954 LTR21B 408 + 0 380 118898 27 2 1 37 4 0 4 1 0 33 1 0 23 0 4 110 1 0 5 72 8 5 1 0 49 45 41 33 chain 8883 chr6 171115067 + 11822973 11823101 MER2 342 - 86 210 166215 26 8 4 94 chain 4126 chr6 171115067 + 11826462 11826519 L1MA4 2864 - 60 115 205564 38 2 0 17 chain 533222 chr6 171115067 + 11837140 11843579 L1PA7 6471 + 16 6470 3819 209 38 38 147 0 2 202 0 1 110 7 1 351 0 1 610 0 3 5 4 1 935 11 0 63 0 1 402 0 1 58 0 1 243 0 10 17 3 4 72 0 1 62 0 5 437 1 0 1018 0 1 122 4 5 189 0 1 203 0 1 126 0 3 32 1 0 687 5 10 58 2 0 5 chain 17223 chr6 171115067 + 11847300 11847601 THE1B 368 + 0 306 134992 108 5 6 37 19 18 17 39 45 9 1 0 66 chain 3471 chr6 171115067 + 11864493 11864531 L1MB2 1706 + 677 715 215791 38 chain 55623 chr6 171115067 + 11864776 11865412 L1PA5 6144 + 5507 6140 55350 357 2 0 21 1 0 255 chain 24792 chr6 171115067 + 11871706 11872074 THE1B 368 - 0 368 105933 75 1 0 15 1 2 67 19 17 18 3 2 127 0 5 27 2 0 13 chain 28100 chr6 171115067 + 11880357 11880723 THE1B 368 - 0 368 92648 30 1 2 42 1 0 126 1 0 123 1 6 24 2 0 15 chain 205857 chr6 171115067 + 11881898 11884249 L1PA6 6164 + 3805 6159 18801 557 0 4 673 1 0 1120 chain 14514 chr6 171115067 + 11905951 11906132 L1PA14 3548 - 632 817 142843 129 0 4 52 chain 61375 chr6 171115067 + 11906926 11907620 L1PA5 6144 - 1 697 52162 339 0 1 151 0 1 204 chain 3184 chr6 171115067 + 11921819 11921913 MER53 195 + 33 129 221225 34 42 44 18 chain 120271 chr6 171115067 + 11933076 11934660 LTR12C 1709 + 0 1709 30953 153 4 0 50 53 1 421 0 1 127 0 161 198 1 0 5 3 1 106 0 4 76 70 85 65 6 5 48 0 4 198 chain 13545 chr6 171115067 + 11967407 11967575 MLT2A1 477 - 92 259 146190 60 1 0 107 chain 25532 chr6 171115067 + 11969930 11970229 AluSp 311 + 4 301 102087 128 2 0 169 chain 7952 chr6 171115067 + 12017976 12018074 LTR12C 1709 - 679 777 171319 98 chain 22813 chr6 171115067 + 12038628 12038906 AluSc 308 + 4 281 116516 253 1 0 24 chain 27993 chr6 171115067 + 12042305 12042613 AluYb8 318 - 12 318 93021 174 2 0 132 chain 21865 chr6 171115067 + 12069720 12069964 L1PA3long 6157 + 5912 6156 120772 244 chain 26547 chr6 171115067 + 12099416 12099698 AluYa8 305 - 9 305 97854 77 0 14 205 chain 125430 chr6 171115067 + 12107699 12109186 LTR12C 1709 - 0 1709 29270 145 0 101 22 0 1 63 0 1 148 10 14 96 3 1 5 1 0 264 0 118 730 chain 522571 chr6 171115067 + 12139599 12145759 L1PA6 6164 + 0 6162 4907 459 7 6 467 0 1 51 12 5 328 0 2 467 1 0 139 1 0 191 0 3 78 0 4 124 20 0 46 0 2 694 0 1 272 0 1 355 1 0 898 0 7 34 9 8 134 0 1 406 0 7 122 0 3 179 1 2 358 0 2 244 1 0 61 chain 22824 chr6 171115067 + 12152125 12152411 AluSx1 309 + 19 297 116478 258 9 1 19 chain 14799 chr6 171115067 + 12154828 12155051 L1PA8 5853 + 5646 5853 141936 33 1 0 60 3 2 19 1 0 41 13 0 52 chain 50542 chr6 171115067 + 12156120 12156848 L1PA11 4918 - 388 1121 58621 8 2 0 3 3 0 11 4 0 20 1 0 14 2 0 64 17 17 61 3 1 181 0 15 211 0 1 8 15 18 100 chain 22393 chr6 171115067 + 12176466 12176764 AluSq10 312 - 12 312 118522 61 1 2 13 19 20 204 chain 7414 chr6 171115067 + 12178573 12178663 AluJr 308 + 34 124 174684 90 chain 19575 chr6 171115067 + 12209443 12209679 AluY 311 + 59 296 128446 73 0 1 163 chain 23255 chr6 171115067 + 12214799 12215155 THE1B 368 - 0 368 114419 75 35 29 69 2 0 23 1 0 28 0 8 77 0 15 25 2 0 19 chain 22584 chr6 171115067 + 12215910 12216190 AluY 311 + 27 303 117657 94 3 0 11 0 1 116 2 0 54 chain 37220 chr6 171115067 + 12237056 12237507 L1PA5 6144 - 1 445 73208 8 5 0 239 3 0 90 0 1 106 chain 22003 chr6 171115067 + 12238123 12238423 AluSx1 309 + 3 301 120215 130 26 24 144 chain 6547 chr6 171115067 + 12243573 12243653 Tigger2 2703 - 338 419 180874 55 0 1 25 chain 11589 chr6 171115067 + 12264750 12264930 MER30 238 - 0 199 153934 26 4 4 12 3 0 66 4 0 7 3 29 55 chain 4800 chr6 171115067 + 12267560 12267616 Tigger1 2417 + 1414 1470 197361 56 chain 62183 chr6 171115067 + 12267626 12268555 Tigger1 2417 + 627 1572 51813 19 11 12 99 5 7 160 0 1 105 0 1 5 0 3 141 20 19 69 30 36 80 6 9 89 0 9 8 14 5 68 chain 2698 chr6 171115067 + 12333940 12334014 Tigger3a 397 + 0 75 230245 21 33 34 20 chain 25056 chr6 171115067 + 12337216 12337510 AluSp 311 - 9 301 104523 174 2 0 118 chain 8218 chr6 171115067 + 12362857 12363031 MER30 238 + 30 230 169837 67 61 87 46 chain 5793 chr6 171115067 + 12385793 12385862 L1P5 443 + 134 203 187223 69 chain 130283 chr6 171115067 + 12399304 12401090 L1PB1 5432 + 3663 5418 28024 59 43 0 23 1 3 278 18 4 318 1 0 5 0 2 29 0 2 207 11 64 149 1 0 297 1 2 9 1 0 20 1 0 12 1 0 12 15 9 53 2 1 16 1 0 43 1 0 13 16 4 30 2 0 5 1 0 14 2 0 26 1 0 16 1 0 16 1 0 14 chain 6571 chr6 171115067 + 12428094 12428175 MER5A1 166 + 15 96 180690 81 chain 75445 chr6 171115067 + 12453756 12454809 MER11A 1151 - 0 1145 45797 36 0 4 65 1 0 62 0 1 11 1 0 35 7 17 58 8 15 11 25 1 87 1 5 191 14 9 4 0 1 97 0 1 146 4 0 64 1 0 34 0 1 41 0 99 49 chain 49027 chr6 171115067 + 12461358 12462089 L1MA5A 2387 - 101 805 59729 55 36 10 6 3 0 28 1 0 27 2 0 52 1 0 39 1 0 33 28 33 223 0 2 47 0 1 94 1 0 54 chain 4458 chr6 171115067 + 12476444 12476525 LTR40b 463 - 0 82 201259 17 18 19 46 chain 44238 chr6 171115067 + 12524368 12524970 L1PA15 4387 - 1977 2584 63900 160 1 5 39 1 3 59 15 15 257 1 0 69 chain 37729 chr6 171115067 + 12526176 12526638 LTR2 463 + 0 463 72518 352 10 11 100 chain 2648 chr6 171115067 + 12529765 12529830 MER5A 189 - 67 133 231027 24 24 25 17 chain 94600 chr6 171115067 + 12542467 12543655 L1PA8A 6298 - 7 1178 38186 124 2 0 6 2 4 448 0 1 126 0 1 11 0 2 78 2 1 121 19 1 5 3 0 4 0 1 237 chain 554707 chr6 171115067 + 12549424 12555576 L1PA3long 6157 + 6 6157 861 1916 18 0 1152 0 4 505 0 14 107 1 0 545 0 1 1749 6 5 153 chain 29036 chr6 171115067 + 12617335 12617648 AluYb8 318 + 0 313 88825 313 chain 16686 chr6 171115067 + 12621865 12622064 L1PA4 6152 + 5949 6152 136446 42 1 5 156 chain 197555 chr6 171115067 + 12633192 12635662 L1PA8A 6298 - 16 2493 19384 89 7 0 9 0 7 351 2 1 173 0 1 65 6 7 56 7 4 156 1 0 146 0 3 765 0 1 5 1 0 46 0 6 282 11 11 221 1 2 70 chain 17131 chr6 171115067 + 12639710 12639902 L1PA7 6471 + 6274 6466 135226 192 chain 54772 chr6 171115067 + 12641873 12642542 L1PA7 6471 - 5 672 55860 8 2 0 129 1 0 7 0 1 522 chain 164453 chr6 171115067 + 12642884 12644821 L1PA7 6471 + 4517 6454 22751 214 13 11 206 2 1 658 8 11 836 chain 6944 chr6 171115067 + 12652080 12652170 L1PA7 6471 + 6378 6466 177865 81 2 0 7 chain 29581 chr6 171115067 + 12664201 12664510 AluYa5 310 - 1 310 86263 309 chain 24911 chr6 171115067 + 12667401 12667811 LTR7 482 + 0 482 105272 69 6 95 21 51 0 39 8 40 20 0 1 4 6 7 186 chain 282168 chr6 171115067 + 12667823 12671628 HERVH-int 3825 + 10 3825 14526 10 2 1 509 1 0 11 1 0 4 0 1 24 4 3 7 62 0 19 1 31 13 241 54 14 21 0 68 0 1 4 2 0 92 0 1 554 20 11 10 0 2 16 1 0 215 8 35 351 23 28 105 0 4 193 16 17 207 0 10 435 9 11 38 0 210 269 0 2 225 chain 26156 chr6 171115067 + 12672887 12673246 LTR7 482 + 0 482 99384 68 7 96 60 8 40 20 0 1 4 0 1 192 chain 25451 chr6 171115067 + 12684068 12684427 MLT2A1 477 + 0 380 102454 21 0 1 11 8 15 89 3 4 21 7 11 107 0 8 92 chain 3985 chr6 171115067 + 12692101 12692149 L1PA8 5853 - 0 48 207609 48 chain 39848 chr6 171115067 + 12697604 12698042 L1PA3long 6157 - 0 444 69538 9 0 6 429 chain 24846 chr6 171115067 + 12732613 12732921 L1PA8A 6298 - 11 319 105647 89 7 0 11 2 9 199 chain 47050 chr6 171115067 + 12743812 12744335 L1P1 4361 + 2403 2928 61165 97 0 2 426 chain 30185 chr6 171115067 + 12744344 12744716 MER41-int 2638 - 900 1275 84234 70 1 0 279 0 4 22 chain 16162 chr6 171115067 + 12854791 12855117 L1PA17 2846 + 2379 2693 137866 23 0 2 96 4 0 17 5 0 18 1 0 31 88 84 43 chain 65582 chr6 171115067 + 12860249 12861050 L1PA7 6471 - 10 821 50302 6 0 4 172 5 7 34 10 12 122 0 2 452 chain 24591 chr6 171115067 + 12868218 12868510 AluSc5 308 + 9 302 107039 86 0 1 206 chain 11824 chr6 171115067 + 12888351 12888677 MLT1A1 405 + 92 405 152927 21 166 153 139 chain 26161 chr6 171115067 + 12897964 12898279 L1PA7 6471 - 17 332 99360 315 chain 9184 chr6 171115067 + 12965248 12965366 MER2 342 - 93 211 164636 118 chain 61275 chr6 171115067 + 12983795 12984490 L1PA5 6144 - 15 710 52218 695 chain 44964 chr6 171115067 + 12989846 12990363 LTR14 556 - 39 556 63101 517 chain 12745 chr6 171115067 + 13004788 13004947 L1PA8 5853 - 0 157 149272 92 1 0 20 2 1 44 chain 7607 chr6 171115067 + 13028826 13028990 MER20 218 - 24 180 173499 27 22 13 66 2 0 5 20 23 22 chain 27567 chr6 171115067 + 13034242 13034548 AluYf4 310 - 5 310 94447 52 1 0 253 chain 45124 chr6 171115067 + 13064596 13065247 LTR66 600 - 0 600 62905 154 0 4 29 83 19 199 0 1 9 1 0 93 5 14 78 chain 16737 chr6 171115067 + 13077152 13077334 L1PA2 6032 + 5845 6030 136292 61 0 3 121 chain 134879 chr6 171115067 + 13082714 13084194 L1PA4 6152 - 534 2018 27038 310 0 4 1170 chain 48170 chr6 171115067 + 13084194 13084761 L1PA4 6152 + 5597 6152 60341 26 18 0 279 0 1 238 0 5 6 chain 11888 chr6 171115067 + 13091033 13091227 MER1A 529 - 0 211 152658 19 40 57 135 chain 24767 chr6 171115067 + 13091703 13092033 MER1A 529 - 0 332 106073 56 18 20 256 chain 4820 chr6 171115067 + 13127819 13127925 MER34 540 - 425 529 197120 13 34 33 47 1 0 11 chain 15202 chr6 171115067 + 13131479 13131819 L1PB1 5432 + 5114 5422 140770 23 1 0 7 1 0 14 5 1 9 3 1 50 1 0 10 8 7 43 2 1 16 3 0 17 52 37 21 7 6 17 1 0 11 1 0 17 chain 125422 chr6 171115067 + 13133498 13135040 SVA_B 1603 + 7 1603 29271 16 7 1 18 12 5 149 2 0 331 40 0 233 0 40 120 4 0 37 9 5 12 0 77 552 chain 12174 chr6 171115067 + 13197774 13197923 L1PA5 6144 - 1 143 151517 8 7 0 134 chain 9893 chr6 171115067 + 13198751 13198989 MER30 238 - 0 238 161108 39 3 0 33 77 73 63 1 0 4 3 11 15 chain 14743 chr6 171115067 + 13214287 13214451 U1 164 + 0 164 142125 164 chain 72370 chr6 171115067 + 13244266 13245318 MER11C 1089 - 26 1089 47313 143 1 0 56 30 31 95 0 1 15 2 0 23 1 0 4 10 14 63 4 6 13 72 66 147 1 0 65 0 4 62 0 9 108 0 1 137 chain 51120 chr6 171115067 + 13245320 13246117 L1PA15 4387 - 128 941 58238 22 12 8 12 10 5 27 1 0 41 14 13 26 3 4 21 0 6 111 0 6 25 1 0 28 0 2 12 13 11 28 0 9 11 4 0 16 0 2 180 5 8 81 0 6 4 1 0 88 chain 5888 chr6 171115067 + 13248042 13248114 FAM 185 + 103 173 186287 55 2 0 15 chain 22718 chr6 171115067 + 13255207 13255626 MSTA 426 - 0 426 116992 93 25 33 37 1 0 4 35 35 12 19 18 90 14 15 89 chain 2583 chr6 171115067 + 13308169 13308217 MER81 114 - 29 75 231866 21 9 7 18 chain 9537 chr6 171115067 + 13313229 13313387 MER2 342 + 113 273 162900 4 1 0 80 0 11 12 3 1 6 0 2 20 10 2 22 chain 19935 chr6 171115067 + 13314197 13314451 AluY 311 + 25 297 127343 27 0 1 17 0 3 59 0 1 51 3 16 97 chain 24825 chr6 171115067 + 13349511 13349841 MER1A 529 - 0 330 105740 69 3 0 5 1 3 206 9 10 37 chain 213753 chr6 171115067 + 13387511 13390006 L1PA6 6164 + 3664 6160 18242 492 0 1 205 0 4 384 0 1 786 1 2 469 7 0 7 1 8 126 6 0 11 chain 5179 chr6 171115067 + 13407196 13407259 MLT1J 494 + 102 165 193231 63 chain 10818 chr6 171115067 + 13426003 13426237 MER30 238 - 0 238 156907 46 4 0 32 1 7 16 2 0 13 48 34 46 14 32 12 chain 88781 chr6 171115067 + 13442681 13445050 Tigger1 2417 + 959 2356 40088 80 0 3 191 0 24 140 1 21 619 17 15 37 1166 150 14 1 0 103 chain 12339 chr6 171115067 + 13465366 13465543 MER30 238 - 0 208 150865 45 0 3 26 0 9 26 3 0 6 3 25 68 chain 27147 chr6 171115067 + 13472136 13472490 THE1A 353 - 0 353 95769 118 2 1 4 0 1 118 1 0 111 chain 99376 chr6 171115067 + 13510450 13511823 LTR12C 1709 - 1 1709 36936 66 20 23 15 0 36 12 5 15 22 8 12 279 11 4 98 6 10 4 1 0 131 0 278 234 4 5 168 13 18 235 0 2 41 chain 38352 chr6 171115067 + 13512600 13513380 LTR12D 1347 + 0 822 71643 157 188 176 14 3 7 33 1 0 4 19 20 15 1 4 105 2 33 125 21 13 42 1 25 49 chain 90078 chr6 171115067 + 13541604 13543104 LTR12C 1709 + 0 1692 39623 18 0 14 179 1 0 250 8 9 249 0 118 234 0 47 106 11 4 53 0 1 9 38 37 27 288 306 10 0 2 19 chain 46105 chr6 171115067 + 13546897 13547525 MER4B 649 + 0 634 61939 183 10 10 23 0 2 149 0 4 40 0 1 150 13 12 60 chain 19983 chr6 171115067 + 13547935 13548174 7SK 245 + 0 239 127196 239 chain 25320 chr6 171115067 + 13549230 13549651 MSTA 426 + 1 414 103117 65 49 1 35 22 46 50 3 0 38 2 0 60 0 21 97 chain 20952 chr6 171115067 + 13578608 13578874 AluY 311 + 38 308 124092 94 0 1 57 0 3 62 0 1 4 2 1 47 chain 117423 chr6 171115067 + 13585481 13586821 L1PA6 6164 - 4 1348 31987 1262 0 4 78 chain 3769 chr6 171115067 + 13592414 13592474 MER5A1 166 + 54 116 210826 30 8 10 22 chain 4412 chr6 171115067 + 13613452 13613502 LTR32 486 - 412 462 201770 50 chain 29702 chr6 171115067 + 13618460 13618778 AluYb8 318 - 0 318 85824 318 chain 13988 chr6 171115067 + 13717512 13718158 LTR12C 1709 + 875 1439 144618 34 17 19 140 430 346 25 chain 5077 chr6 171115067 + 13743913 13744095 LTR12C 1709 + 773 997 194328 60 104 146 18 chain 2929 chr6 171115067 + 13747415 13747543 MER58C 217 + 66 192 226538 21 8 0 7 60 67 27 1 0 4 chain 4646 chr6 171115067 + 13758969 13759121 L2a 937 + 185 331 199098 21 81 75 50 chain 22084 chr6 171115067 + 13772175 13772466 AluSq4 311 + 10 303 119874 121 0 1 118 12 13 40 chain 87249 chr6 171115067 + 13772546 13773795 LTR12C 1709 + 0 1519 40672 76 0 1 68 0 1 35 0 2 29 0 2 81 6 7 348 0 278 184 1 0 5 3 1 106 0 4 87 19 30 18 57 57 15 6 7 21 45 15 32 0 2 7 chain 5248 chr6 171115067 + 13776815 13776932 MLT1A0 366 + 182 294 192541 19 12 11 39 24 20 23 chain 17078 chr6 171115067 + 13781600 13781816 HSMAR2 1300 + 1079 1297 135383 125 0 2 91 chain 4255 chr6 171115067 + 13791917 13792004 MER104 178 - 57 141 203825 15 1 4 17 16 10 38 chain 24914 chr6 171115067 + 13803297 13803592 AluSp 311 - 16 311 105248 295 chain 5875 chr6 171115067 + 13815635 13815714 MADE1 96 - 1 96 186425 36 2 18 41 chain 76668 chr6 171115067 + 13829042 13830130 MER11A 1151 - 4 1150 45136 159 6 7 60 0 1 37 18 0 21 8 15 11 25 1 25 1 2 116 7 9 144 0 1 94 0 1 149 4 0 66 1 0 50 8 0 19 1 100 58 chain 33697 chr6 171115067 + 13834346 13834784 L1PA8 5853 + 5420 5853 78095 100 10 11 33 1 0 43 3 1 85 1 0 47 2 1 19 1 0 93 chain 27881 chr6 171115067 + 13835468 13835821 L1PA8 5853 + 5506 5853 93418 56 1 0 46 2 0 71 2 1 59 3 2 19 1 0 93 chain 10511 chr6 171115067 + 13838512 13838645 MER65A 464 + 328 463 158204 105 0 2 28 chain 91328 chr6 171115067 + 13853993 13855509 LTR12C 1709 - 0 1709 39185 40 43 42 72 4 3 35 225 236 53 0 4 91 0 47 249 1 0 25 0 119 143 34 50 8 1 0 11 1 0 221 1 0 129 0 1 4 1 0 8 0 2 116 chain 4354 chr6 171115067 + 13861002 13861142 LTR12C 1709 + 650 708 202535 41 82 0 17 chain 26048 chr6 171115067 + 13864921 13865275 L1PA8 5853 - 0 347 99832 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 43 2 1 58 chain 136142 chr6 171115067 + 13871028 13872717 LTR12C 1709 - 0 1709 26807 91 6 5 266 0 2 117 0 4 77 0 1 28 4 2 4 1 0 34 0 2 75 0 4 160 1 0 263 1 14 469 2 1 90 chain 6205 chr6 171115067 + 13877031 13877107 Tigger3c 601 - 233 308 183552 67 1 0 8 chain 35612 chr6 171115067 + 13878566 13879021 LTR17 781 + 255 753 75400 71 2 1 368 2 46 12 chain 184307 chr6 171115067 + 13881103 13883314 HERV17-int 4347 + 12 4347 20558 15 1 0 52 1 0 11 0 37 11 2 1 196 17 447 683 20 4 13 0 1 577 0 1672 10 0 3 602 chain 25576 chr6 171115067 + 13883627 13883955 LTR17 781 + 0 326 101842 59 1 0 120 1 0 147 chain 2266 chr6 171115067 + 13896756 13896797 L1MA5A 2387 - 28 70 235784 19 1 0 8 1 3 12 chain 20611 chr6 171115067 + 13896837 13897179 THE1C 375 - 0 363 125260 26 6 5 89 0 17 32 0 3 16 56 57 42 0 1 75 chain 4804 chr6 171115067 + 13918832 13918887 MER53 195 + 11 66 197310 55 chain 6077 chr6 171115067 + 13944693 13944772 MER31B 477 - 404 477 184601 6 6 0 67 chain 20443 chr6 171115067 + 13958374 13958617 AluSc 308 + 38 281 125775 243 chain 121419 chr6 171115067 + 13971713 13973659 THE1B-int 1605 + 0 1605 30558 15 0 2 139 51 0 274 360 33 152 21 24 28 7 8 66 9 18 515 0 22 309 chain 4068 chr6 171115067 + 13971867 13971918 THE1B-int 1605 + 99 154 202122 11 0 4 40 chain 17830 chr6 171115067 + 13996314 13996586 L1PA8 5853 - 0 272 133301 93 1 0 18 1 0 40 6 9 10 6 5 8 0 2 60 2 0 27 chain 17952 chr6 171115067 + 14003087 14003315 LTR12C 1709 + 769 1037 132978 68 1 0 140 1 42 18 chain 21048 chr6 171115067 + 14012047 14012417 THE1B 368 - 0 368 123739 46 17 11 68 70 74 169 chain 61746 chr6 171115067 + 14041156 14041946 L1PA8 5853 - 0 780 52017 93 1 3 16 2 1 61 1 0 71 2 0 44 1 0 52 25 16 68 0 2 244 0 2 93 2 0 14 chain 59249 chr6 171115067 + 14068665 14069374 LTR17 781 + 0 754 53251 327 0 1 367 2 46 13 chain 24046 chr6 171115067 + 14070093 14070412 MLT2A1 477 + 38 405 110074 13 0 4 28 0 10 78 3 0 8 0 1 24 0 1 97 0 33 48 0 2 20 chain 3694 chr6 171115067 + 14073788 14073829 MER41B 635 - 0 41 212024 41 chain 14362 chr6 171115067 + 14106015 14106232 LTR62 707 + 7 207 143334 62 1 2 34 12 0 93 6 0 9 chain 25999 chr6 171115067 + 14140455 14140757 AluY 311 + 2 300 100019 130 6 0 143 0 2 23 chain 25178 chr6 171115067 + 14166545 14166848 AluY 311 + 0 309 103856 23 0 9 262 3 0 15 chain 5804 chr6 171115067 + 14240962 14241057 MER33 330 + 100 221 187103 23 1 0 19 6 33 46 chain 30919 chr6 171115067 + 14289541 14289906 L1PA6 6164 + 5796 6162 82652 221 0 1 144 chain 37088 chr6 171115067 + 14297172 14297621 LTR7 482 - 0 482 73400 49 12 14 122 0 31 266 chain 299603 chr6 171115067 + 14298895 14302606 HERVH-int 3825 - 14 3825 13447 197 0 3 281 0 210 404 1 2 525 0 2 176 0 4 227 0 1 63 8 35 455 15 0 447 1 0 49 2 1 13 21 0 17 88 1 41 22 0 19 21 0 7 3 0 13 1 14 24 1 0 10 1 0 38 5 0 138 0 2 10 0 4 155 0 11 212 chain 36787 chr6 171115067 + 14302608 14303054 LTR7 482 - 0 482 73814 49 12 14 35 0 2 90 0 31 160 0 1 100 chain 8580 chr6 171115067 + 14314676 14314784 MLT1A 405 - 31 139 167840 108 chain 119478 chr6 171115067 + 14355976 14357341 L1PA6 6164 - 2 1372 31227 583 0 1 260 0 3 130 0 1 392 chain 14140 chr6 171115067 + 14359906 14360137 MER34B 572 + 300 534 144075 102 17 19 22 12 14 28 1 0 49 chain 3350 chr6 171115067 + 14377378 14377463 MLT2D 439 - 189 275 218048 33 33 34 19 chain 36847 chr6 171115067 + 14387379 14387885 LTR10D 510 - 0 510 73739 245 1 2 34 7 1 38 12 10 94 3 7 8 0 7 64 chain 3569 chr6 171115067 + 14404512 14404554 5S 121 - 79 121 214142 42 chain 557282 chr6 171115067 + 14480223 14486366 L1PA3long 6157 + 19 6157 581 554 0 4 261 2 1 350 0 3 465 11 0 4167 1 0 328 0 1 4 chain 19462 chr6 171115067 + 14498507 14498775 AluSc8 310 + 21 295 128782 111 12 14 124 8 12 13 chain 4993 chr6 171115067 + 14504018 14504077 MER39B 650 + 0 59 195217 59 chain 3494 chr6 171115067 + 14505384 14505426 MIR 256 - 122 165 215439 4 0 1 38 chain 29355 chr6 171115067 + 14523969 14524278 AluYb8 318 - 9 318 87266 309 chain 12670 chr6 171115067 + 14547140 14547361 MER30 238 + 0 237 149571 18 12 13 32 4 5 39 8 26 66 3 0 32 1 0 6 chain 11897 chr6 171115067 + 14551073 14551254 UCON28a 235 + 11 185 152618 18 14 9 115 2 0 32 chain 13442 chr6 171115067 + 14558342 14558521 L1PA8 5853 - 0 176 146543 93 1 0 19 2 1 47 1 0 16 chain 2961 chr6 171115067 + 14573775 14573812 MIR 256 - 23 60 225861 37 chain 35969 chr6 171115067 + 14600569 14601004 LTR10F 562 + 11 562 74931 20 0 1 102 0 115 313 chain 10042 chr6 171115067 + 14606239 14606366 MER85 139 - 0 138 160369 29 0 11 98 chain 25932 chr6 171115067 + 14678837 14679174 L1PA8 5853 - 0 329 100292 93 1 0 19 2 1 52 2 1 5 1 0 41 1 0 33 2 0 46 1 0 38 chain 4261 chr6 171115067 + 14711024 14711079 LTR50 688 - 19 74 203732 55 chain 28438 chr6 171115067 + 14732299 14732774 MER4A1 472 + 0 472 91429 99 68 40 91 1 22 144 16 18 14 1 3 41 chain 5093 chr6 171115067 + 14750847 14750986 MER53 195 + 9 164 194149 53 63 79 23 chain 24701 chr6 171115067 + 14774259 14774545 AluSp 311 + 2 286 106430 88 1 0 42 1 0 154 chain 14083 chr6 171115067 + 14783464 14783748 LTR12C 1709 - 672 940 144283 18 1 42 42 82 26 72 1 0 68 chain 23868 chr6 171115067 + 14847147 14847431 AluSp 311 + 0 288 111092 91 0 3 16 1 2 176 chain 3253 chr6 171115067 + 14850282 14850318 MER53 195 + 25 61 219945 36 chain 10161 chr6 171115067 + 14873656 14873859 MER34B 572 - 0 205 159797 12 4 17 4 0 1 41 6 4 30 22 1 20 6 17 58 chain 3450 chr6 171115067 + 14878448 14878947 MER34A 573 - 5 523 216212 33 409 405 15 16 39 26 chain 2989 chr6 171115067 + 14889391 14889441 MER63C 923 - 148 199 225263 27 5 6 18 chain 22152 chr6 171115067 + 14890826 14891096 AluY 311 + 38 307 119582 95 2 0 12 0 1 161 chain 28446 chr6 171115067 + 14892018 14892372 THE1A 353 + 0 353 91389 18 0 1 4 1 0 86 2 1 243 chain 53996 chr6 171115067 + 14899739 14900413 L1PA10 4194 + 3471 4150 56367 238 0 3 93 1 3 83 0 3 222 3 0 34 chain 3109 chr6 171115067 + 14908168 14908216 L1ME1 1623 + 1228 1280 222759 23 4 8 21 chain 8871 chr6 171115067 + 14924421 14924628 MER20 218 + 17 218 166275 15 1 0 41 36 38 50 28 24 12 4 1 20 chain 4342 chr6 171115067 + 14935277 14935335 MER110A 451 + 262 319 202700 40 1 0 17 chain 8013 chr6 171115067 + 14952351 14952448 MSTC 436 + 0 98 170973 21 0 1 76 chain 6665 chr6 171115067 + 14966893 14966971 MER41B 635 + 48 126 179953 78 chain 41576 chr6 171115067 + 14976397 14976863 LTR2 463 - 0 463 67191 433 3 0 30 chain 17547 chr6 171115067 + 14987019 14987604 MER50 708 - 434 708 134132 22 8 10 124 318 0 44 17 22 52 chain 25108 chr6 171115067 + 15000680 15001376 Tigger2 2703 - 56 431 104242 61 4 0 33 1 0 174 340 13 23 3 4 49 0 10 8 chain 17194 chr6 171115067 + 15004756 15005012 Tigger4b 360 - 81 360 135052 136 21 43 29 8 9 62 chain 5744 chr6 171115067 + 15019681 15019751 MER41B 635 + 15 100 187698 27 0 15 43 chain 36037 chr6 171115067 + 15030715 15031699 LTR8 732 - 0 701 74852 146 49 61 17 43 50 109 37 64 43 6 8 71 332 7 116 6 0 9 chain 21849 chr6 171115067 + 15049096 15049358 HERVL-int 5654 + 4374 4638 120823 137 0 2 125 chain 5260 chr6 171115067 + 15054317 15054396 Tigger1 2417 - 613 701 192415 23 1 4 44 1 7 10 chain 29429 chr6 171115067 + 15074780 15075273 MER1A 529 - 0 492 86939 28 69 72 47 5 0 89 3 0 6 0 3 86 19 23 5 3 0 133 chain 7975 chr6 171115067 + 15075583 15075694 MLT1A 405 - 0 110 171200 63 6 5 42 chain 25980 chr6 171115067 + 15080333 15080628 AluSp 311 + 4 299 100093 295 chain 12368 chr6 171115067 + 15083996 15084170 MER30 238 - 5 202 150760 73 1 7 25 7 24 68 chain 24230 chr6 171115067 + 15092157 15092439 AluSp 311 - 17 299 109042 282 chain 13761 chr6 171115067 + 15119095 15119256 L1PA3long 6157 - 1 162 145402 16 1 0 130 0 1 14 chain 16663 chr6 171115067 + 15123086 15123284 THE1A 353 + 154 353 136502 7 0 1 191 chain 6601 chr6 171115067 + 15124179 15124257 MER30 238 - 0 78 180444 78 chain 14605 chr6 171115067 + 15129263 15129510 MER39B 650 + 257 500 142569 89 12 13 57 24 20 7 1 0 57 chain 4153 chr6 171115067 + 15155816 15155861 MSTD 398 + 290 335 205201 45 chain 133951 chr6 171115067 + 15188721 15190821 SVA_F 1814 + 335 1814 27222 502 6 6 45 1 0 11 226 0 49 0 15 218 409 0 633 chain 9996 chr6 171115067 + 15189334 15189463 SVA_F 1814 + 962 1091 88383 129 chain 11844 chr6 171115067 + 15189834 15189965 SVA_F 1814 + 962 1089 124631 39 3 0 4 1 0 84 chain 18099 chr6 171115067 + 15189965 15190182 SVA_F 1814 + 898 1128 121139 49 0 15 39 1 0 10 1 0 117 chain 34527 chr6 171115067 + 15197819 15198260 MER41A 554 - 113 554 76869 242 11 10 21 1 2 166 chain 23738 chr6 171115067 + 15202599 15202880 AluSp 311 - 25 301 111844 163 5 0 113 chain 16739 chr6 171115067 + 15203888 15204144 LTR8 732 - 114 377 136283 35 14 19 27 15 12 17 0 5 148 chain 12466 chr6 171115067 + 15210561 15210720 MER41A 554 + 14 174 150393 73 5 6 81 chain 24168 chr6 171115067 + 15215583 15215881 AluSp 311 - 15 311 109387 119 5 3 174 chain 21486 chr6 171115067 + 15233569 15233851 AluSg7 307 - 15 296 122196 53 10 8 99 0 1 120 chain 4508 chr6 171115067 + 15315162 15315211 U6 107 + 12 61 200690 49 chain 148833 chr6 171115067 + 15337406 15340195 HUERS-P2-int 2744 + 2 2487 24780 12 30 17 5 0 1 17 7 6 15 11 9 7 1 0 53 2 1 18 229 185 26 7 8 11 7 6 21 3 13 8 21 0 20 6 4 272 20 18 45 0 2 109 1 22 45 1 5 261 8 17 9 2 1 139 7 20 42 6 7 205 1 0 74 2 1 117 0 3 367 20 69 50 326 0 59 21 20 43 chain 22727 chr6 171115067 + 15339769 15340055 AluSp 311 - 17 301 116942 12 8 6 266 chain 159511 chr6 171115067 + 15415059 15416973 SVA_D 2077 - 13 2077 23398 639 0 98 71 24 0 48 0 78 44 1 0 48 0 2 35 1 0 6 37 10 4 1 0 34 11 0 30 2 1 35 0 1 29 0 40 795 3 0 16 chain 3128 chr6 171115067 + 15415976 15416013 SVA_D 2077 - 778 815 102484 37 chain 27804 chr6 171115067 + 15428507 15428834 L1PA5 6144 - 6 331 93677 57 1 0 50 1 0 218 chain 6790 chr6 171115067 + 15432261 15432377 MER51A 677 - 0 128 179031 64 0 3 10 12 20 13 1 2 16 chain 8820 chr6 171115067 + 15537676 15537781 THE1D-int 1627 + 1515 1622 166558 70 0 1 8 0 1 27 chain 7156 chr6 171115067 + 15553413 15553495 MER72 723 - 44 126 176366 82 chain 6265 chr6 171115067 + 15558808 15559047 MER41-int 2638 + 1160 1404 183053 29 147 154 6 2 0 55 chain 27085 chr6 171115067 + 15566279 15566567 AluYa5 310 + 16 303 95988 116 1 0 171 chain 21078 chr6 171115067 + 15573948 15574233 AluSg7 307 - 21 305 123631 11 2 0 120 3 6 7 3 0 12 1 2 126 chain 7726 chr6 171115067 + 15665013 15665144 MER96B 391 - 28 157 172745 18 7 8 51 2 0 19 5 4 29 chain 79860 chr6 171115067 + 15667084 15667991 L1PA4 6152 + 5172 6084 43657 132 0 4 500 3 4 272 chain 2884 chr6 171115067 + 15667991 15668022 L1PA3long 6157 + 6126 6157 211634 31 chain 23238 chr6 171115067 + 15686976 15687255 AluY 311 + 16 292 114500 39 0 1 53 1 0 14 1 0 10 1 0 149 1 0 10 chain 23392 chr6 171115067 + 15693009 15693334 LTR8 732 + 7 307 113689 198 6 7 37 26 0 58 chain 3253 chr6 171115067 + 15694843 15694879 MER53 195 + 24 60 219944 36 chain 10736 chr6 171115067 + 15706909 15707063 Tigger2b_Pri 1066 - 74 227 157258 85 1 2 36 1 0 16 1 0 14 chain 23331 chr6 171115067 + 15722867 15723232 THE1C 375 - 0 375 114020 26 1 0 128 33 36 5 2 0 22 0 1 18 0 4 88 5 10 37 chain 157352 chr6 171115067 + 15725806 15727588 SVA_D 2077 - 17 2066 23683 621 0 1 16 0 49 98 0 37 69 12 49 59 0 1 6 16 158 885 chain 40754 chr6 171115067 + 15738247 15738705 L1PA4 6152 - 9 467 68228 458 chain 28905 chr6 171115067 + 15756638 15756944 AluYb8 318 - 12 318 89436 306 chain 15365 chr6 171115067 + 15758663 15758904 LTR12C 1709 - 535 781 140308 15 42 47 184 chain 62624 chr6 171115067 + 15762665 15763363 L1PA4 6152 - 0 698 51621 698 chain 2959 chr6 171115067 + 15774006 15774419 L2a 937 + 282 685 225899 22 106 103 17 214 226 8 19 0 27 chain 8097 chr6 171115067 + 15777252 15777432 MER39B 650 - 26 210 170507 26 66 69 30 0 1 58 chain 20838 chr6 171115067 + 15782366 15783239 Tigger2a 444 - 0 444 124495 20 43 45 22 3 7 45 199 54 42 286 0 100 2 5 54 24 17 33 chain 19313 chr6 171115067 + 15784211 15784445 L1PA6 6164 - 2 234 129207 6 2 0 226 chain 50013 chr6 171115067 + 15791246 15791902 PABL_A 660 - 0 660 59008 241 11 0 90 1 0 31 0 13 11 1 0 105 8 9 24 0 3 43 0 1 4 2 0 18 0 1 66 chain 270508 chr6 171115067 + 15805817 15808772 L1PA4 6152 - 6 2961 15163 2955 chain 5153 chr6 171115067 + 15813672 15813752 MADE1 96 + 0 95 193516 31 2 18 6 1 0 40 chain 21295 chr6 171115067 + 15814172 15814459 AluSg7 307 - 0 287 122878 156 15 13 6 0 1 104 0 1 6 chain 3507 chr6 171115067 + 15841549 15841608 MLT2B4 540 - 0 49 215258 35 6 0 8 4 0 6 chain 17593 chr6 171115067 + 15874955 15875279 L1PA17 2846 + 2367 2689 134018 24 0 12 59 9 10 27 4 0 15 17 12 7 1 0 59 2 0 8 1 0 22 10 9 18 1 0 40 chain 31711 chr6 171115067 + 15877180 15877546 L1PA6 6164 + 5796 6162 81315 366 chain 23684 chr6 171115067 + 15891684 15891979 AluSp 311 + 0 294 112130 79 2 1 214 chain 26210 chr6 171115067 + 15903710 15904393 THE1C 375 - 0 375 99165 25 1 0 170 1 0 32 1 7 24 1 2 78 313 0 37 chain 12180 chr6 171115067 + 15907082 15907225 LTR8 732 - 0 143 151491 143 chain 19190 chr6 171115067 + 15925512 15925842 L1PA15 4387 + 4041 4356 129560 63 1 0 26 1 0 31 0 2 22 26 22 10 1 0 50 6 3 44 3 1 14 5 0 27 chain 91974 chr6 171115067 + 15931649 15932721 MER11C 1089 - 16 1089 38977 473 8 9 591 chain 24057 chr6 171115067 + 15939019 15939339 THE1B-int 1605 + 1196 1584 110006 121 1 2 118 0 68 47 8 7 25 chain 11776 chr6 171115067 + 15939346 15939595 THE1B 368 + 0 276 153149 35 5 20 84 28 31 5 1 0 19 39 49 33 chain 45899 chr6 171115067 + 15942127 15942713 L1PA8 5853 + 5271 5853 62131 293 1 0 35 0 1 8 2 0 71 1 0 10 1 0 45 9 8 13 4 5 93 chain 4317 chr6 171115067 + 15954022 15954093 MER5A 189 + 34 105 203003 42 1 0 6 6 7 16 chain 4085 chr6 171115067 + 15961761 15961811 MLT2F 649 - 576 626 206142 50 chain 61020 chr6 171115067 + 16008910 16009581 L1PA3long 6157 + 5481 6152 52320 671 chain 542523 chr6 171115067 + 16010765 16016786 L1PA3long 6157 - 1 6153 2420 1247 3 0 2548 0 2 1405 0 1 49 6 134 63 0 1 260 3 4 288 0 1 149 chain 44124 chr6 171115067 + 16019983 16020593 MER4A1_ 611 + 0 611 64049 120 2 3 108 24 25 128 9 8 219 chain 43937 chr6 171115067 + 16037848 16038681 MER9a1 513 + 0 513 64285 13 1 0 163 319 0 337 chain 13031 chr6 171115067 + 16040265 16040466 LTR12C 1709 - 832 1032 148123 40 1 0 64 15 0 7 2 17 72 chain 19169 chr6 171115067 + 16046240 16046471 THE1B-int 1605 + 1346 1578 129620 115 0 1 116 chain 86011 chr6 171115067 + 16068632 16069981 LTR12C 1709 - 12 1709 41152 90 3 0 5 5 38 16 8 7 13 203 229 71 0 4 106 3 1 5 1 0 104 0 278 341 16 0 69 1 35 7 1 0 5 3 0 163 0 3 5 3 0 102 chain 2947 chr6 171115067 + 16111147 16111178 MIR 256 - 128 159 226146 31 chain 6126 chr6 171115067 + 16148602 16148676 U3 216 - 142 216 184217 74 chain 22830 chr6 171115067 + 16151306 16151616 AluY 311 + 8 311 116441 115 0 3 7 26 16 162 chain 12926 chr6 171115067 + 16165584 16165808 MER21B 843 - 18 223 148527 13 4 0 3 0 1 31 43 27 130 chain 42787 chr6 171115067 + 16176819 16177376 L1PA8 5853 + 5300 5852 65673 182 0 2 73 8 7 46 2 0 69 15 13 48 3 2 18 1 0 92 chain 18289 chr6 171115067 + 16191669 16191871 L1PA4 6152 - 0 202 132106 202 chain 16623 chr6 171115067 + 16197778 16198084 LTR12C 1709 - 832 1059 136605 27 43 6 7 1 0 124 41 0 63 chain 28063 chr6 171115067 + 16210577 16211040 MER1A 529 - 1 529 92782 31 37 40 218 7 24 24 0 2 54 18 61 49 12 12 13 chain 14258 chr6 171115067 + 16214720 16214897 LTR8 732 - 553 732 143681 150 0 2 27 chain 52201 chr6 171115067 + 16217847 16218792 LTR12C 1709 - 184 1709 57498 14 0 4 19 150 208 52 0 4 96 12 19 27 0 6 81 0 2 43 0 276 103 81 305 102 5 4 160 chain 15946 chr6 171115067 + 16218792 16219324 LTR12C 1709 + 1152 1695 138532 72 11 4 32 0 3 21 183 187 14 107 118 92 chain 3371 chr6 171115067 + 16221656 16221693 MER82 654 - 187 224 217649 37 chain 39306 chr6 171115067 + 16223775 16224337 LTR61 567 - 9 567 70313 27 1 0 3 1 0 17 1 0 89 6 5 22 0 4 167 4 1 28 0 2 80 15 0 44 5 16 27 0 1 25 chain 57447 chr6 171115067 + 16225324 16226105 L1PA6 6164 + 5370 6159 54267 58 0 1 257 0 1 222 1 5 34 0 3 5 20 21 40 2 1 81 14 8 36 0 5 11 chain 89357 chr6 171115067 + 16226289 16227704 LTR12C 1709 - 0 1709 39858 23 1 0 37 34 33 36 0 2 17 1 0 146 13 12 20 5 34 10 29 0 10 12 29 72 11 4 91 0 47 154 3 283 70 9 0 6 1 8 95 1 0 6 1 0 43 26 1 130 0 2 91 14 15 158 15 0 24 chain 6082 chr6 171115067 + 16231887 16231959 LTR61 567 - 0 72 180544 72 chain 8579 chr6 171115067 + 16231959 16232062 LTR61 567 + 464 567 167849 103 chain 6142 chr6 171115067 + 16232473 16232551 HY3 101 - 11 89 184055 78 chain 27371 chr6 171115067 + 16259242 16259658 LTR7 482 - 0 482 95044 174 5 0 18 0 32 33 0 1 40 1 52 17 15 14 15 29 17 69 chain 287321 chr6 171115067 + 16260917 16264710 HERVH-int 3825 - 0 3825 14201 225 0 2 268 0 210 10 126 128 905 3 0 66 0 4 291 3 30 337 0 1 122 15 0 359 2 1 86 0 1 82 7 6 18 18 17 18 196 8 11 1 0 15 17 9 6 4 0 9 1 0 10 1 0 24 0 1 4 1 0 11 1 0 152 0 2 43 1 0 130 0 2 126 0 7 68 chain 32144 chr6 171115067 + 16264712 16265124 LTR7 482 - 0 482 80619 174 2 1 10 0 31 7 0 1 33 0 1 109 8 46 69 chain 12909 chr6 171115067 + 16265784 16266596 LTR12 884 + 157 810 148596 53 1 0 13 0 2 16 5 50 16 56 20 9 1 2 17 446 197 20 29 79 61 1 0 15 31 61 22 chain 3145 chr6 171115067 + 16266145 16266238 LTR12 884 + 693 812 222064 35 43 69 15 chain 13897 chr6 171115067 + 16267041 16267261 LTR12_ 688 + 362 612 144929 26 3 4 124 1 0 15 31 61 20 chain 23933 chr6 171115067 + 16267610 16267930 LTR12_ 688 + 362 688 110731 91 2 1 139 1 0 24 19 27 44 chain 18322 chr6 171115067 + 16288953 16289180 LTR12C 1709 + 769 1036 132014 68 1 0 132 0 41 26 chain 14464 chr6 171115067 + 16312598 16312798 MER87B 500 + 7 208 143008 46 5 6 149 chain 43480 chr6 171115067 + 16344526 16345083 MLT2A2 560 + 2 560 64836 105 7 8 65 1 0 147 0 1 232 chain 104965 chr6 171115067 + 16346931 16348354 LTR12C 1709 + 0 1707 35508 121 0 1 158 8 0 12 1 9 34 0 43 38 4 5 45 2 0 111 0 5 20 14 15 102 0 118 275 1 0 5 13 11 96 11 4 141 3 0 107 0 131 89 1 0 11 chain 34233 chr6 171115067 + 16358362 16360295 L1PB1 5432 + 4779 5427 77305 25 17 24 152 7 13 101 21 23 21 1 0 4 3 2 14 26 20 35 1275 8 11 5 4 45 1 0 20 3 0 10 9 0 16 2 0 5 1 0 14 2 0 15 1 0 9 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 28494 chr6 171115067 + 16379121 16379623 L1PB1 5432 + 4942 5417 91207 137 1 4 20 4 3 8 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 2 1 14 3 0 7 14 5 15 12 9 14 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 8955 chr6 171115067 + 16382956 16383073 MER30 238 - 0 114 165852 46 3 0 68 chain 3783 chr6 171115067 + 16395212 16395262 MER63B 433 + 94 144 210629 50 chain 25729 chr6 171115067 + 16395966 16396270 AluSc5 308 + 0 305 101169 108 1 2 195 chain 24542 chr6 171115067 + 16402061 16402420 THE1B 368 - 1 368 107302 74 1 0 94 4 0 7 2 0 11 10 9 64 1 0 15 0 1 24 11 27 41 chain 50127 chr6 171115067 + 16406700 16407287 LTR10C 591 + 0 591 58922 259 0 1 176 0 1 73 0 2 79 chain 20574 chr6 171115067 + 16418791 16419025 L1PA3long 6157 - 0 227 125383 140 7 0 87 chain 75059 chr6 171115067 + 16445756 16446571 L1PA3long 6157 - 0 815 45988 815 chain 23077 chr6 171115067 + 16453437 16453710 AluSc8 310 + 28 303 115265 105 0 2 168 chain 34697 chr6 171115067 + 16455960 16456481 LTR12F 595 + 0 595 76628 46 21 98 24 33 22 12 5 14 108 2 1 270 chain 442435 chr6 171115067 + 16456512 16462170 HERV9-int 5642 + 11 5642 8983 68 4 5 512 6 8 112 3 0 132 4 2 32 88 2 17 24 109 96 6 0 8 12 15 115 0 1 14 5 0 6 1 6 306 1 2 7 1 0 55 6 14 527 0 2 18 2 3 653 0 3 472 1 0 24 3 0 5 3 6 608 0 1 91 17 5 212 29 31 5 2 0 233 1 0 27 0 9 511 0 1 129 2 1 101 5 8 116 10 8 34 2 0 25 2 1 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 39025 chr6 171115067 + 16464336 16464856 LTR12F 595 + 0 595 70705 72 0 1 18 26 19 22 1 83 109 1 0 271 chain 8711 chr6 171115067 + 16490124 16490230 MER5A 189 - 82 188 167135 106 chain 21002 chr6 171115067 + 16492433 16492665 L1PA3long 6157 + 5925 6157 123910 232 chain 54694 chr6 171115067 + 16501551 16502216 L1PA8 5853 - 0 661 55907 93 1 0 19 2 1 48 1 0 13 1 0 54 0 1 16 2 0 364 0 1 51 chain 20660 chr6 171115067 + 16514965 16515214 AluSc 308 + 33 281 125105 98 1 0 150 chain 22922 chr6 171115067 + 16521512 16521790 AluY 311 + 0 285 116003 55 0 4 49 1 2 22 0 1 140 0 1 11 chain 5283 chr6 171115067 + 16593280 16593355 LTR12F 595 - 385 466 192182 25 0 8 31 2 0 17 chain 29759 chr6 171115067 + 16613214 16613526 AluYb8 318 + 0 312 85607 312 chain 25591 chr6 171115067 + 16618306 16618658 L1PA8 5853 + 5506 5853 101775 58 1 0 45 2 0 73 1 0 8 9 10 40 2 1 19 2 1 92 chain 57763 chr6 171115067 + 16637094 16637736 L1PA5 6144 + 5501 6143 54102 642 chain 30994 chr6 171115067 + 16639158 16639613 LTR12F 595 + 0 595 82528 100 6 91 19 15 30 28 24 0 19 0 64 244 chain 23823 chr6 171115067 + 16644482 16644761 AluSc 308 + 10 296 111342 13 0 7 266 chain 16968 chr6 171115067 + 16668435 16668630 L1PA4 6152 - 0 204 135674 12 0 9 183 chain 9780 chr6 171115067 + 16669916 16670056 L1PA8 5853 - 0 138 161698 93 1 0 19 3 2 24 chain 183919 chr6 171115067 + 16701652 16703711 L1PA4 6152 + 4075 6141 20595 179 0 1 1124 0 5 654 0 1 102 chain 4626 chr6 171115067 + 16766855 16767109 MER33 330 + 42 224 199340 17 4 2 35 170 100 28 chain 9972 chr6 171115067 + 16769146 16769267 MER85 139 + 2 139 160714 88 0 10 24 0 6 9 chain 7146 chr6 171115067 + 16775789 16775866 L1P1 4361 - 568 645 176434 77 chain 30125 chr6 171115067 + 16775866 16776201 L1PA4 6152 + 5771 6106 84397 335 chain 2511 chr6 171115067 + 16776201 16776228 L1PA4 6152 + 6115 6142 232992 27 chain 72135 chr6 171115067 + 16820404 16821338 L1PA8 5853 - 0 1046 47413 67 0 3 23 1 0 19 2 1 38 22 24 70 2 0 44 1 0 21 0 23 350 0 91 70 2 0 202 chain 24509 chr6 171115067 + 16843949 16844240 AluSp 311 - 21 311 107497 20 6 5 265 chain 34722 chr6 171115067 + 16860462 16860832 L1HS 6032 - 1525 1895 76586 370 chain 139714 chr6 171115067 + 16860832 16862323 L1HS 6032 + 4530 6021 26185 1491 chain 59514 chr6 171115067 + 16877898 16878840 L1PA14 3548 - 92 1012 53094 42 1 0 18 1 0 9 1 0 8 4 2 36 14 9 24 1 2 87 1 0 78 6 4 6 2 0 9 16 12 105 2 0 5 2 0 12 0 7 28 3 1 10 9 6 91 27 25 29 0 1 102 1 0 152 chain 27950 chr6 171115067 + 16886215 16886615 LTR7 482 + 0 482 93162 54 23 61 109 0 1 41 17 58 58 0 2 98 chain 295399 chr6 171115067 + 16886617 16890214 HERVH-int 3825 + 0 3825 13679 121 5 1 89 0 11 111 1 0 202 1 0 4 1 0 6 0 1 24 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 26 0 26 8 26 14 1 0 59 0 1 6 0 2 13 0 3 445 15 0 323 0 1 135 4 31 280 0 8 293 0 1 155 0 1 388 0 2 225 10 12 39 8 218 262 0 2 223 chain 30890 chr6 171115067 + 16891476 16891878 LTR7 482 + 0 482 82698 69 8 46 109 0 1 41 0 31 8 0 1 9 0 9 158 chain 2696 chr6 171115067 + 16912936 16913041 MSTD 398 - 294 398 230261 26 60 59 19 chain 34131 chr6 171115067 + 16924490 16924881 L1PA7 6471 - 452 843 77437 391 chain 38245 chr6 171115067 + 16924881 16925344 L1PA7 6471 + 6010 6470 71777 71 2 0 220 0 1 18 0 1 138 2 0 7 1 0 4 chain 3111 chr6 171115067 + 16937774 16937807 LTR54B 464 + 162 195 222735 33 chain 23323 chr6 171115067 + 16990214 16990562 THE1B 368 + 0 340 114076 15 2 0 32 0 1 58 10 11 52 31 24 100 1 0 47 chain 48584 chr6 171115067 + 17006284 17007160 LTR12 884 - 0 884 60049 136 8 9 83 232 19 254 0 220 163 chain 8312 chr6 171115067 + 17015943 17016038 LTR12D 1347 - 662 757 169324 95 chain 5256 chr6 171115067 + 17017616 17017681 L1M3 994 + 211 276 192441 65 chain 15099 chr6 171115067 + 17052531 17052835 Tigger3b 1229 + 647 947 141039 44 21 20 11 2 0 9 1 0 34 0 2 52 13 15 16 37 33 64 chain 20245 chr6 171115067 + 17054563 17054851 AluSp 311 - 17 290 126393 10 16 0 138 12 13 112 chain 178812 chr6 171115067 + 17068682 17073454 L1PB1 5432 - 10 2458 21093 4 1 0 14 1 0 13 1 0 21 1 0 16 10 8 14 1 0 5 2 0 16 8 0 5 7 4 8 2 0 14 4 3 41 6 5 10 2 1 38 9 4 11 17 11 10 10 8 24 2287 11 395 0 2 80 4 0 511 0 1 167 0 3 162 2 0 50 5 6 100 6 7 204 11 4 169 8 11 25 0 3 108 3 0 68 8 0 53 chain 121516 chr6 171115067 + 17069381 17070938 THE1A-int 1579 + 0 1565 30534 15 14 16 458 0 1 7 1 0 83 1 0 74 0 3 152 6 9 162 0 1 584 chain 516897 chr6 171115067 + 17073585 17080145 L1PA7 6471 + 7 6468 5498 83 0 213 105 27 10 46 0 1 109 0 1 37 11 14 54 37 35 41 0 17 240 0 2 48 4 0 1426 1 0 345 0 1 54 0 4 152 0 2 49 0 4 46 334 0 57 0 7 293 2 0 73 0 3 260 0 1 836 0 4 92 0 3 846 1 0 391 1 0 303 1 0 143 2 0 10 chain 22359 chr6 171115067 + 17097628 17097913 AluSq 315 + 2 293 118672 51 1 4 67 0 1 8 0 2 158 chain 19798 chr6 171115067 + 17114227 17114491 MER1A 529 - 9 274 127819 54 9 10 201 chain 41491 chr6 171115067 + 17132147 17132731 Charlie3 2679 + 350 2679 67291 23 0 4 93 0 1747 228 1 2 148 31 24 60 chain 20310 chr6 171115067 + 17149230 17149524 AluSc 308 + 0 291 126204 34 7 6 189 7 7 19 1 0 16 8 7 13 chain 28767 chr6 171115067 + 17166310 17166618 AluYa5 310 + 0 305 90034 118 3 0 187 chain 55965 chr6 171115067 + 17184766 17185851 MER4E1 777 - 7 777 55144 172 0 1 7 325 0 40 24 15 101 0 1 11 6 5 19 0 1 45 0 19 183 0 1 30 0 2 91 6 1 25 chain 3295 chr6 171115067 + 17206351 17206407 LTR12C 1709 - 672 847 219086 27 5 124 24 chain 1326 chr6 171115067 + 17222361 17222430 LTR56 451 + 0 70 134743 29 11 12 29 chain 25116 chr6 171115067 + 17222448 17222802 THE1D 372 + 0 372 104193 65 0 10 115 1 2 43 11 17 53 0 2 29 2 1 35 chain 8590 chr6 171115067 + 17222815 17223262 LTR56 451 + 95 315 134743 40 0 1 53 228 4 95 15 11 16 chain 24455 chr6 171115067 + 17224660 17225000 THE1B 368 - 16 368 107780 59 1 0 101 2 0 20 1 0 80 4 2 35 0 15 17 3 6 17 chain 20255 chr6 171115067 + 17225000 17225424 LTR26B 539 - 245 538 126363 49 27 19 59 0 3 96 126 0 67 chain 96627 chr6 171115067 + 17244470 17245788 L1PA13 3608 + 2240 3518 37664 96 0 3 779 3 0 5 42 24 16 1 0 5 2 1 4 0 1 100 2 0 61 1 0 56 2 0 5 2 0 47 2 0 5 2 0 18 1 0 22 0 3 6 19 7 14 chain 21791 chr6 171115067 + 17251041 17251306 L1PA16 3655 - 77 342 121060 265 chain 79069 chr6 171115067 + 17273841 17274967 L1PA15 4387 + 2760 3856 44021 71 6 0 179 0 1 146 7 0 11 2 0 117 1 0 12 0 3 71 11 9 119 2 1 27 16 4 26 1 2 160 10 14 21 0 1 4 1 0 53 2 0 16 4 0 9 2 0 19 chain 5888 chr6 171115067 + 17299896 17299965 L1MA7 2200 - 525 594 186289 69 chain 3885 chr6 171115067 + 17300558 17300606 MSTB 430 - 24 72 209095 48 chain 23063 chr6 171115067 + 17312877 17313153 AluSp 311 - 24 300 115334 276 chain 22509 chr6 171115067 + 17313754 17314041 AluSp 311 + 9 294 117989 39 11 9 237 chain 8238 chr6 171115067 + 17314666 17314800 MLT1A0 366 + 12 148 169741 14 21 22 31 0 1 68 chain 29161 chr6 171115067 + 17331644 17332050 LOR1b 457 - 59 457 88248 53 0 3 16 0 1 170 0 3 4 1 0 79 0 3 30 18 0 13 0 1 22 chain 3856 chr6 171115067 + 17336913 17336992 L1ME2z 1083 - 445 520 209503 17 1 0 16 19 16 26 chain 51122 chr6 171115067 + 17341011 17341736 LTR12_ 688 - 0 688 58236 100 0 1 276 15 0 37 21 16 67 1 0 21 3 4 6 18 0 160 chain 37239 chr6 171115067 + 17371318 17371891 L1PB2 3958 - 120 665 73183 36 0 1 26 1 0 22 2 0 16 9 0 14 1 2 40 1 0 64 10 9 63 2 0 92 4 0 14 11 9 56 5 0 12 1 0 53 2 0 16 chain 24195 chr6 171115067 + 17379746 17380027 AluY 311 + 15 297 109242 117 0 1 164 chain 28704 chr6 171115067 + 17389039 17389340 AluYa5 310 + 1 302 90317 301 chain 6784 chr6 171115067 + 17405625 17405727 MER44A 345 - 123 226 179078 62 7 8 33 chain 63967 chr6 171115067 + 17414537 17415292 L1PA8A 6298 - 7 764 51022 89 0 1 627 0 1 39 chain 23760 chr6 171115067 + 17424361 17424640 AluY 311 + 11 290 111706 20 0 1 92 1 2 139 2 0 25 chain 23254 chr6 171115067 + 17428770 17429016 L1PA2 6032 + 5784 6030 114425 246 chain 83947 chr6 171115067 + 17435026 17435925 L1HS 6032 + 5133 6032 41931 899 chain 30104 chr6 171115067 + 17440907 17441267 L1PA6 6164 - 3 363 84470 360 chain 23773 chr6 171115067 + 17482475 17482767 AluSc 308 + 0 308 111637 55 0 17 59 1 0 177 chain 3047 chr6 171115067 + 17501504 17501536 U2 167 - 135 167 224054 32 chain 7917 chr6 171115067 + 17503378 17503557 MLT1B 390 - 7 243 171542 35 11 10 14 1 6 52 40 93 26 chain 97074 chr6 171115067 + 17545781 17546871 L1PA5 6144 - 1 1095 37546 146 0 1 72 0 4 534 1 0 337 chain 33893 chr6 171115067 + 17546871 17547273 L1P1 4361 + 3942 4341 77785 208 1 0 155 1 0 23 2 1 12 chain 23604 chr6 171115067 + 17553592 17553879 AluSc8 310 + 11 300 112560 17 1 0 104 0 3 165 chain 32169 chr6 171115067 + 17561355 17561809 MER4A1 472 - 0 472 80584 10 0 1 5 1 0 109 1 3 79 6 42 27 22 1 139 1 0 40 0 2 14 chain 198203 chr6 171115067 + 17561820 17564812 MER4-int 2692 - 3 2688 19341 137 8 9 49 0 1 7 5 11 198 0 2 119 8 9 367 4 3 14 1 2 242 12 7 29 1 2 32 0 1 1 4 0 60 5 6 12 0 1 172 0 3 104 0 9 161 0 1 6 1 0 21 6 0 57 0 1 30 304 1 202 17 13 27 0 1 38 0 2 364 23 15 22 6 0 11 0 2 6 2 0 12 0 1 50 2 0 25 1 0 7 chain 31334 chr6 171115067 + 17569839 17570592 MER4A1 472 - 11 472 81923 13 6 1 200 9 22 40 304 0 84 0 2 69 13 15 15 chain 4574 chr6 171115067 + 17571463 17571638 MER4B 649 + 0 204 199951 22 5 4 21 93 123 34 chain 14958 chr6 171115067 + 17581318 17581498 LTR12C 1709 + 928 1108 141452 180 chain 3159 chr6 171115067 + 17581548 17581655 LTR12C 1709 + 957 1068 160839 47 26 30 34 chain 3230 chr6 171115067 + 17588761 17588797 AluJr4 308 - 92 128 220427 36 chain 6999 chr6 171115067 + 17590117 17590222 Tigger4 2445 + 1960 2056 177467 83 1 0 3 8 0 10 chain 4206 chr6 171115067 + 17596399 17596449 Tigger3b 1229 + 58 108 204469 50 chain 22983 chr6 171115067 + 17689767 17690054 AluSp 311 - 12 310 115701 142 9 20 136 chain 22216 chr6 171115067 + 17701176 17701470 AluSp 311 + 8 296 119280 31 3 1 13 8 4 239 chain 18946 chr6 171115067 + 17715947 17716182 AluSp 311 + 64 298 130238 177 1 0 57 chain 5625 chr6 171115067 + 17729607 17729671 LTR12C 1709 + 654 718 188831 64 chain 162094 chr6 171115067 + 17734907 17736758 SVA_D 2077 - 6 2077 23049 594 0 99 165 1 0 68 11 92 15 2 4 80 1 38 894 0 3 15 1 0 4 chain 7966 chr6 171115067 + 17737690 17737786 HY3 101 - 1 97 171240 96 chain 122807 chr6 171115067 + 17744507 17746098 LTR12C 1709 - 0 1709 30113 22 1 0 28 15 14 17 1 0 136 54 53 49 1 0 162 0 4 106 3 1 5 1 0 264 0 118 240 16 17 380 0 3 90 chain 24489 chr6 171115067 + 17748064 17748360 AluSg7 307 - 10 307 107607 165 0 1 131 chain 27609 chr6 171115067 + 17779490 17779802 AluSp 311 - 0 311 94325 137 1 0 174 chain 26504 chr6 171115067 + 17779973 17780276 AluYf4 310 - 13 310 98028 165 6 0 132 chain 3539 chr6 171115067 + 17789776 17789817 LTR8 732 - 104 145 214712 41 chain 74681 chr6 171115067 + 17807121 17808151 MER11A 1151 + 0 1151 46172 58 4 103 69 1 0 62 8 4 28 0 2 108 9 10 94 0 1 26 1 2 38 5 9 70 0 1 131 12 46 22 18 0 36 0 1 230 chain 8046 chr6 171115067 + 17836916 17837016 MSTA 426 - 326 426 170776 100 chain 34333 chr6 171115067 + 17874866 17875545 L1PB1 5432 - 8 617 77161 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 3 0 10 6 5 44 21 19 51 17 11 9 1 0 13 1 0 19 58 20 42 26 26 212 chain 17831 chr6 171115067 + 17881709 17881934 AluSc 308 + 64 287 133299 34 2 0 189 chain 3436 chr6 171115067 + 17951913 17952097 L1MB8 1703 - 150 346 216457 34 127 139 23 chain 105199 chr6 171115067 + 17975554 17976980 LTR12C 1709 - 17 1707 35449 93 1 34 21 10 8 19 1 0 18 113 215 56 0 4 114 2 1 87 0 2 106 0 2 64 0 118 146 6 13 569 chain 2971 chr6 171115067 + 17977426 17977462 MER5A 189 + 144 180 225655 36 chain 11632 chr6 171115067 + 17977946 17978080 L1PA5 6144 - 12 145 153762 52 1 0 81 chain 4162 chr6 171115067 + 18011080 18011125 LTR12C 1709 - 961 1006 205071 45 chain 18092 chr6 171115067 + 18020736 18020958 LTR12C 1709 + 946 1215 132611 125 0 47 97 chain 4702 chr6 171115067 + 18053616 18053665 tRNA-Arg-CGY_ 50 + 0 49 198513 49 chain 22873 chr6 171115067 + 18063894 18064204 AluSp 311 - 2 301 116217 122 1 2 130 19 7 38 chain 28697 chr6 171115067 + 18065038 18065391 THE1A 353 - 0 353 90337 115 5 6 122 1 0 110 chain 4091 chr6 171115067 + 18066596 18066643 MER21A 919 + 11 58 206071 47 chain 37822 chr6 171115067 + 18070738 18071238 MER75 514 + 0 513 72380 100 11 15 232 0 9 104 1 0 37 0 1 15 chain 28149 chr6 171115067 + 18075515 18075894 THE1C 375 - 0 375 92466 26 1 0 150 18 13 5 0 2 179 chain 17241 chr6 171115067 + 18089836 18090360 LTR12 884 + 96 687 134951 178 21 39 24 269 318 32 chain 21871 chr6 171115067 + 18093896 18094192 AluSg7 307 - 15 287 120746 214 25 1 57 chain 3157 chr6 171115067 + 18098968 18099005 MER103C 291 - 133 170 221797 37 chain 3657 chr6 171115067 + 18101044 18101098 MIR 256 + 78 136 212612 14 1 5 39 chain 25325 chr6 171115067 + 18101141 18101518 THE1B 368 - 0 368 103096 61 13 1 12 1 0 8 8 10 103 2 1 130 0 5 24 2 0 13 chain 83579 chr6 171115067 + 18113239 18114747 L1MA2 4263 + 2922 4114 42083 640 7 5 17 5 1 23 17 5 49 1 0 72 0 31 44 3 0 59 317 2 44 3 0 6 1 4 32 11 9 93 8 1 46 1 0 9 chain 3894 chr6 171115067 + 18124258 18124306 MER5B 177 + 129 177 208951 48 chain 33526 chr6 171115067 + 18126249 18126767 MER51A 677 - 16 677 78355 102 1 3 15 7 8 20 1 0 110 11 5 46 0 152 25 3 15 18 27 10 132 chain 219879 chr6 171115067 + 18174721 18177769 L1PB1 5432 - 12 3036 17886 16 1 0 8 1 4 46 2 0 14 1 0 4 41 28 4 1 0 12 8 7 40 1 0 16 3 2 50 2 0 10 2 0 3 2 0 9 1 0 13 1 0 20 1 0 9 35 4 129 0 4 290 0 1 53 7 8 118 17 25 94 7 8 36 0 2 30 0 5 276 0 1 58 0 1 4 7 9 105 0 11 106 1 2 666 29 10 110 0 5 46 1 4 257 18 22 16 0 4 85 1 0 104 chain 73731 chr6 171115067 + 18226998 18227927 LTR5_Hs 974 + 2 974 46656 56 5 4 59 0 27 140 0 1 329 0 5 199 5 12 29 10 8 20 0 6 77 chain 509186 chr6 171115067 + 18228625 18234509 L1PA5 6144 + 0 6074 6230 461 1 2 85 0 119 13 0 3 120 5 20 126 0 4 196 0 3 1161 1 2 236 0 1 204 0 9 405 1 0 75 0 4 195 0 2 546 1 0 26 0 3 130 1 0 190 0 4 75 1 0 132 0 8 69 0 5 196 2 0 441 1 5 137 0 1 128 0 1 142 1 0 54 0 10 246 1 0 79 chain 23855 chr6 171115067 + 18239155 18239454 AluSp 311 - 18 311 111151 41 7 1 251 chain 23273 chr6 171115067 + 18250447 18250729 AluY 311 + 29 307 114329 103 0 1 156 3 0 5 2 0 13 chain 24533 chr6 171115067 + 18259284 18259654 AluY 311 + 5 311 107352 73 65 1 44 1 0 9 0 1 178 chain 4832 chr6 171115067 + 18275334 18275462 L1PB3 3668 - 100 206 196997 39 3 1 25 1 0 4 1 0 4 35 17 16 chain 20137 chr6 171115067 + 18304242 18304531 AluSc8 310 + 2 297 126723 57 8 9 63 22 26 52 0 1 87 chain 8772 chr6 171115067 + 18307205 18307309 U6 107 - 2 106 166804 104 chain 12737 chr6 171115067 + 18309668 18309935 L1MA5 2750 + 2485 2726 149303 79 2 1 8 2 0 51 10 9 13 1 0 15 63 42 23 chain 41558 chr6 171115067 + 18310160 18310680 MER9a3 513 - 0 512 67210 57 4 0 22 6 7 256 8 0 150 0 3 17 chain 24807 chr6 171115067 + 18320050 18320342 AluSp 311 - 19 311 105851 292 chain 10581 chr6 171115067 + 18326250 18326400 L1MB3 1562 - 144 293 157907 22 1 0 25 3 4 16 1 0 82 chain 27315 chr6 171115067 + 18326915 18327218 AluYk4 311 - 8 311 95224 303 chain 8942 chr6 171115067 + 18331410 18331525 L1PB3 3668 + 3172 3286 165911 12 1 0 102 chain 5381 chr6 171115067 + 18345099 18345164 SVA_B 1603 - 0 62 191185 6 3 0 56 chain 480117 chr6 171115067 + 18354014 18359548 L1PA5 6144 - 0 5542 7726 11 3 2 1509 1 0 200 0 1 77 12 20 236 3 10 72 1 0 54 0 2 1100 0 1 1678 8 0 569 chain 12163 chr6 171115067 + 18362890 18363064 MER30 238 - 0 189 151563 48 3 0 60 4 0 8 4 26 47 chain 15814 chr6 171115067 + 18372931 18373150 AluY 311 + 85 294 138911 38 2 0 6 9 0 92 9 10 63 chain 11099 chr6 171115067 + 18376218 18376405 Tigger2a 444 - 245 444 155815 53 40 51 83 0 1 11 chain 32093 chr6 171115067 + 18435909 18436258 L1PA4 6152 + 5797 6146 80704 349 chain 25883 chr6 171115067 + 18474953 18475254 AluY 311 + 10 311 100514 301 chain 3071 chr6 171115067 + 18489609 18489776 MER58A 224 - 0 169 223557 28 115 117 24 chain 10623 chr6 171115067 + 18517099 18517329 L1PB1 5432 - 2 211 157720 7 1 0 5 1 0 14 1 0 12 1 0 22 1 0 18 8 6 14 1 0 4 3 1 19 13 5 7 7 0 16 1 0 41 1 6 12 chain 158340 chr6 171115067 + 18546924 18548703 L1PA5 6144 - 1174 2948 23552 252 7 0 1514 0 2 6 chain 104547 chr6 171115067 + 18548706 18549876 L1PA5 6144 + 4969 6141 35610 926 0 1 93 0 1 151 chain 25724 chr6 171115067 + 18552415 18552707 L1PA5 6144 - 0 299 101198 148 0 7 144 chain 42623 chr6 171115067 + 18552707 18553188 L1PA5 6144 + 5291 5775 65871 454 0 3 27 chain 20451 chr6 171115067 + 18564408 18564660 AluY 311 + 38 292 125753 94 0 1 73 0 1 85 chain 17804 chr6 171115067 + 18574460 18574653 L1PA3long 6157 + 5964 6157 133395 193 chain 32301 chr6 171115067 + 18575522 18576033 L1MA1 4479 - 375 902 80362 23 15 14 89 9 32 87 1 0 8 7 5 16 2 0 75 3 0 16 2 0 25 1 0 40 0 4 16 1 2 75 chain 36680 chr6 171115067 + 18582416 18582872 MER75 514 - 12 469 73986 314 0 1 142 chain 10006 chr6 171115067 + 18619830 18620028 MSTB1 431 + 91 287 160553 39 11 6 5 2 0 50 22 26 38 10 11 21 chain 478570 chr6 171115067 + 18656430 18662709 L1PA8A 6298 + 36 6290 7781 4 1 0 16 1 0 14 5 0 7 6 0 22 4 1 19 31 0 8 0 21 9 2 1 12 1 0 7 13 10 17 7 4 13 10 8 9 1 0 4 1 0 17 5 0 7 2 0 31 4 57 6 0 1 8 62 0 38 2 0 15 1 0 10 12 17 53 1 0 4 1 3 283 1 0 15 4 0 289 5 0 126 3 2 42 0 3 128 1 0 506 10 9 282 1 7 25 0 2 278 35 0 604 0 3 247 0 21 24 1 0 13 0 4 84 4 5 43 0 3 316 6 7 87 1 2 355 1 0 307 0 14 180 1 0 83 12 20 130 0 1 192 1 2 216 0 4 15 0 3 79 1 3 151 0 1 197 2 5 247 6 0 116 chain 180449 chr6 171115067 + 18725432 18728055 MER57-int 2662 + 99 2644 20946 9 1 0 112 1 2 91 3 1 52 11 6 42 0 2 23 6 8 372 8 6 85 0 1 181 4 0 221 0 1 89 2 1 187 9 10 238 31 17 42 0 1 4 7 8 86 1 2 18 6 7 285 16 0 19 3 0 11 2 0 82 21 15 61 50 30 16 1 0 5 1 0 10 4 1 15 24 18 33 3 0 19 chain 22226 chr6 171115067 + 18730204 18730477 AluSp 311 + 16 289 119223 273 chain 5611 chr6 171115067 + 18752648 18752766 MER5A 189 + 32 142 188973 39 17 16 22 0 1 4 14 6 22 chain 27527 chr6 171115067 + 18754374 18754765 LTR7 482 - 0 482 94583 158 1 11 7 0 1 8 0 31 44 0 11 96 27 65 50 chain 294649 chr6 171115067 + 18755995 18759708 HERVH-int 3825 - 0 3825 13719 225 0 2 260 8 218 39 9 11 621 0 1 150 7 8 286 0 4 284 4 31 103 0 1 355 15 0 442 2 0 4 0 1 61 66 1 18 46 1 42 30 6 19 0 17 10 13 7 8 4 0 9 1 0 10 1 0 24 0 1 6 1 0 9 1 0 197 1 0 111 0 11 211 chain 22424 chr6 171115067 + 18759722 18760101 LTR7 482 - 12 482 118357 146 0 11 49 8 40 13 1 11 36 13 63 15 48 36 50 chain 63948 chr6 171115067 + 18771179 18772077 Charlie3 2679 + 18 2679 51028 16 1 0 4 5 32 33 8 8 49 0 1 182 3 0 127 0 1747 74 10 1 311 21 22 54 chain 4234 chr6 171115067 + 18786042 18786092 L1MC1 2226 - 184 234 204110 50 chain 14238 chr6 171115067 + 18823008 18823353 L1MA3 4352 - 0 285 143767 15 16 15 8 1 0 19 59 13 24 2 0 23 4 0 33 0 2 77 42 34 22 chain 3897 chr6 171115067 + 18836401 18836444 tRNA-Gln-CAG 43 + 0 43 208902 43 chain 22860 chr6 171115067 + 18848676 18848957 AluSp 311 + 0 279 116285 71 1 0 49 1 0 159 chain 276130 chr6 171115067 + 18867513 18871816 L1PB1 5432 + 1778 5404 14866 87 0 1 419 5 0 125 0 1 4 310 0 80 9 1 392 1 4 121 0 1 708 41 16 156 0 1 61 0 4 355 308 0 299 9 7 22 0 1 64 0 1 53 1 2 273 16 16 49 1 0 15 3 0 17 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 25 13 18 8 5 13 2 0 12 0 1 12 1 0 21 1 0 13 chain 94438 chr6 171115067 + 18872895 18873970 MER11C 1089 + 0 1073 38224 180 2 0 893 chain 9803 chr6 171115067 + 18873996 18874118 HERVK11-int 2540 - 632 754 161580 71 1 0 38 0 1 12 chain 16631 chr6 171115067 + 18875103 18875288 L1PA3long 6157 - 0 185 136583 185 chain 31765 chr6 171115067 + 18907785 18908232 L1PA8 5853 + 5410 5853 81222 109 1 4 41 2 1 43 2 0 70 2 1 14 6 5 41 7 6 15 1 0 93 chain 220454 chr6 171115067 + 18910856 18913204 L1HS 6032 - 2 2351 17851 2344 0 1 4 chain 18214 chr6 171115067 + 18913204 18913399 L1HS 6032 + 3486 3681 131512 195 chain 38942 chr6 171115067 + 18928873 18929315 L1PA3long 6157 - 56 498 70813 442 chain 4954 chr6 171115067 + 18929315 18929374 L1PA3long 6157 + 6098 6157 195666 59 chain 27385 chr6 171115067 + 18936502 18936866 THE1C 375 + 0 363 95015 184 12 11 83 0 1 70 1 0 14 chain 13265 chr6 171115067 + 18952450 18952692 Tigger3d 321 - 4 255 147232 39 51 36 27 3 1 6 0 24 102 0 2 14 chain 22669 chr6 171115067 + 18952701 18952959 L1PA4 6152 - 11 270 117219 137 0 1 121 chain 26721 chr6 171115067 + 18965215 18965578 THE1A 353 - 0 353 97257 49 13 5 41 1 0 147 1 0 111 chain 97480 chr6 171115067 + 18967000 18968087 L1PA3long 6157 - 0 1092 37429 150 1 6 6 5 0 462 0 1 218 0 4 245 chain 5615 chr6 171115067 + 19039157 19039221 MLT1A0 366 - 233 297 188929 64 chain 6745 chr6 171115067 + 19050037 19050156 MLT1A1 405 + 195 348 179361 29 29 63 61 chain 10582 chr6 171115067 + 19052009 19052166 L1PA2 6032 + 5910 6032 157902 110 35 0 12 chain 53305 chr6 171115067 + 19062704 19063391 L1PA8 5853 - 0 678 56827 33 5 2 57 2 1 19 2 1 50 1 0 8 8 7 67 2 0 44 1 0 232 0 1 156 chain 24731 chr6 171115067 + 19079947 19080253 AluY 311 + 0 301 106268 123 21 16 162 chain 68088 chr6 171115067 + 19104901 19105909 L1PREC2 3366 + 1449 2666 49206 86 1 2 44 43 258 63 27 22 552 14 0 7 3 11 73 1 5 94 chain 59522 chr6 171115067 + 19105939 19106667 L1PA7 6471 - 6 736 53090 6 2 0 141 6 5 86 0 3 448 5 7 34 chain 3943 chr6 171115067 + 19122404 19122570 L1M4c 1769 + 960 1122 208223 33 103 99 30 chain 30202 chr6 171115067 + 19124768 19125131 L1PA8 5853 + 5496 5853 84187 68 1 0 46 2 0 72 1 0 62 1 0 18 1 0 91 chain 251014 chr6 171115067 + 19130309 19133090 L1PA4 6152 + 3368 6151 16177 572 0 1 2060 0 1 149 chain 30077 chr6 171115067 + 19155647 19155966 AluYb9 318 - 0 318 84573 119 1 0 199 chain 41804 chr6 171115067 + 19179695 19180221 LTR10G 522 - 0 522 66892 14 1 0 59 4 1 83 0 1 325 1 0 39 chain 96425 chr6 171115067 + 19203093 19204607 L1PA13 3608 - 2014 3495 37698 436 1 4 227 32 33 89 11 12 44 8 4 115 2 0 86 0 1 11 1 0 16 2 0 18 2 0 14 17 0 8 21 31 17 14 12 13 4 5 107 2 0 73 55 41 12 2 1 26 1 0 3 2 0 22 chain 31714 chr6 171115067 + 19212776 19213230 LTR7B 505 + 0 495 81310 108 0 10 57 0 38 12 34 27 26 0 2 82 1 0 79 14 13 41 chain 537209 chr6 171115067 + 19221059 19227209 L1PA4 6152 + 2 6152 3285 543 0 3 32 1 0 254 17 0 402 1 0 177 3 4 299 1 0 60 0 1 747 0 1 306 0 2 682 0 1 884 0 1 389 0 2 512 0 4 46 0 1 135 0 3 659 chain 432134 chr6 171115067 + 19239252 19244847 L1PA8 5853 + 50 5853 9263 22 2 0 10 66 26 72 0 9 113 22 26 202 0 1 151 8 6 40 4 2 53 0 3 188 9 12 498 5 5 280 3 1 247 0 1 28 0 1 110 1 3 111 0 4 22 1 2 691 0 1 4 4 5 394 0 1 186 5 6 55 0 1 5 2 1 400 1 2 74 0 3 16 6 5 216 0 247 344 29 10 41 0 2 72 0 1 75 3 0 20 2 0 387 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 28 0 1 64 chain 537890 chr6 171115067 + 19247184 19253323 L1PA4 6152 + 6 6151 3168 436 26 20 118 1 0 656 0 1 539 0 1 67 0 4 182 0 2 284 1 0 4 0 1 57 0 1 145 0 1 1163 0 2 406 1 3 841 0 1 8 1 0 610 1 0 592 chain 3010 chr6 171115067 + 19269839 19269870 L1M2c 2366 + 838 869 224818 31 chain 82953 chr6 171115067 + 19270842 19271987 LTR12D 1347 + 0 1347 42356 183 79 88 27 10 46 192 1 32 126 0 41 135 17 17 98 0 97 170 12 0 95 chain 409844 chr6 171115067 + 19272038 19276854 HERV9-int 5642 + 0 4824 9806 236 0 1 558 1 0 312 4 0 319 0 11 1132 1 2 459 8 6 1678 0 2 108 chain 3863 chr6 171115067 + 19279990 19280033 LTR54B 464 - 14 57 209409 43 chain 20419 chr6 171115067 + 19288900 19289219 THE1C 375 - 39 375 125839 118 9 15 12 1 0 35 9 0 12 18 38 18 0 1 87 chain 21504 chr6 171115067 + 19332660 19332905 L1PA3long 6157 - 1 247 122134 48 0 1 197 chain 402413 chr6 171115067 + 19401809 19406749 HERVL-int 5654 - 682 5654 10017 604 1 5 90 9 10 186 2 1 102 6 8 125 1 0 341 0 1 4 26 25 864 3 10 587 1 2 125 0 1 25 0 4 734 3 0 133 0 4 96 10 15 82 0 1 183 0 3 432 7 11 158 chain 16712 chr6 171115067 + 19406901 19407138 MLT2A1 477 - 232 477 136367 73 11 15 16 1 2 57 0 1 31 0 2 48 chain 21542 chr6 171115067 + 19423611 19423837 AluYa5 310 - 9 235 121998 226 chain 52573 chr6 171115067 + 19429199 19429837 L1PA7 6471 - 10 647 57253 61 2 1 262 0 1 125 2 1 186 chain 9859 chr6 171115067 + 19430456 19430569 L1PA5 6144 - 7 120 161289 113 chain 27650 chr6 171115067 + 19430569 19430888 L1PA5 6144 + 5637 5956 94206 319 chain 7343 chr6 171115067 + 19438513 19438604 5S 121 + 0 90 175134 82 1 0 8 chain 28625 chr6 171115067 + 19462208 19462535 L1PA7 6471 + 6130 6459 90630 8 0 2 319 chain 24534 chr6 171115067 + 19474501 19474843 THE1A 353 - 12 353 107349 53 3 0 73 12 13 92 1 0 25 0 1 8 0 1 75 chain 122766 chr6 171115067 + 19474851 19476424 THE1A-int 1579 - 8 1579 30126 363 1 0 175 20 19 401 10 11 99 2 1 502 chain 23070 chr6 171115067 + 19476806 19477106 THE1A 353 - 54 353 115295 101 2 0 88 1 0 34 3 4 66 0 1 5 chain 535267 chr6 171115067 + 19481979 19488120 L1PA5 6144 + 0 6144 3557 321 0 3 1218 0 1 5 1 0 761 1 0 4 0 1 1188 1 0 2296 0 1 345 chain 359088 chr6 171115067 + 19495380 19499677 L1P1 4361 + 1 4341 11374 365 0 2 206 1 0 104 14 133 252 2 1 166 1 0 314 0 1 4 1 0 1207 0 1 5 39 11 778 49 0 141 1 0 291 0 5 162 1 0 155 1 0 23 2 1 12 chain 131596 chr6 171115067 + 19500004 19501493 L1PA4 6152 + 4677 6152 27718 624 1 0 142 1 0 701 12 0 8 chain 5107 chr6 171115067 + 19507771 19507827 L1PA13 3608 - 815 871 194009 56 chain 29655 chr6 171115067 + 19507944 19508334 MLT2A1 477 - 93 477 86048 172 10 9 24 2 0 9 4 1 169 chain 117008 chr6 171115067 + 19515600 19517257 THE1B-int 1605 + 0 1597 32123 115 54 0 158 0 6 151 38 21 28 17 26 199 17 13 605 0 1 29 0 9 6 9 0 192 1 0 38 chain 26791 chr6 171115067 + 19517633 19517998 MER1A 529 + 161 529 97010 175 1 2 118 17 19 54 chain 74456 chr6 171115067 + 19526298 19527743 L1PB1 5432 - 48 1129 46298 14 1 0 24 2 0 14 1 0 4 43 38 10 1 0 43 1 0 16 2 1 53 2 0 5 10 6 9 1 0 9 1 0 24 58 11 176 0 1 111 4 3 8 2 0 99 0 2 63 0 1 5 4 0 10 3 4 227 1 2 26 296 0 62 chain 318326 chr6 171115067 + 19539698 19543385 HERVH-int 3825 + 30 3825 12656 303 2 1 147 15 123 14 1 0 13 24 21 4 1 0 41 1 0 52 0 1 13 0 2 13 0 1 1503 0 1 12 2 3 266 0 1 870 1 4 9 3 0 377 chain 27240 chr6 171115067 + 19575822 19576123 L1PA5 6144 + 4821 5122 95460 301 chain 91089 chr6 171115067 + 19576123 19577141 L1PA5 6144 + 5123 6141 39266 1018 chain 47835 chr6 171115067 + 19584351 19584945 L1PA7 6471 + 5875 6470 60602 350 0 1 56 6 6 33 0 1 144 1 0 4 chain 51292 chr6 171115067 + 19586205 19586771 L1PA3long 6157 - 5 571 58118 566 chain 7785 chr6 171115067 + 19589639 19589729 L1PA7 6471 - 4 94 172386 90 chain 5042 chr6 171115067 + 19590536 19590687 MER3 215 - 35 202 194708 20 2 8 35 17 11 22 37 53 18 chain 332521 chr6 171115067 + 19620832 19624722 L1PA3long 6157 + 2216 6154 12110 343 0 1 738 1 0 7 3 4 634 1 2 477 1 4 73 0 4 1178 2 37 278 1 4 44 0 1 109 chain 4658 chr6 171115067 + 19627788 19627858 L1MB8 1703 + 1421 1490 198972 8 0 3 6 4 0 52 chain 31594 chr6 171115067 + 19638466 19638842 L1PA7 6471 - 16 405 81501 151 0 1 103 0 11 111 0 1 11 chain 5857 chr6 171115067 + 19642677 19642749 U6 107 - 20 96 186609 50 0 4 22 chain 24515 chr6 171115067 + 19655492 19655784 AluY 311 + 4 298 107469 41 6 7 74 0 1 171 chain 62210 chr6 171115067 + 19702285 19702971 L1PA2 6032 + 5340 6030 51796 479 0 3 192 0 1 15 chain 16808 chr6 171115067 + 19707470 19707671 L1PA5 6144 + 5942 6144 136095 187 1 2 13 chain 34336 chr6 171115067 + 19725680 19726290 L1PB1 5432 + 4843 5424 77154 260 1 0 10 6 5 20 26 20 9 2 0 53 2 1 12 9 8 40 1 0 15 1 0 4 4 0 3 5 0 22 17 10 11 2 0 24 1 0 19 1 7 8 2 1 15 1 0 4 chain 82887 chr6 171115067 + 19738750 19739721 L1PA7 6471 - 5 982 42383 156 1 2 104 0 1 93 0 1 364 1 0 45 0 2 76 1 4 115 1 0 14 chain 196497 chr6 171115067 + 19744530 19746749 L1PA6 6164 + 3931 6162 19466 434 0 8 945 0 4 840 chain 567938 chr6 171115067 + 19765123 19771149 L1HS 6032 + 6 6032 29 6026 chain 6708 chr6 171115067 + 19772512 19772607 Tigger1 2417 + 2323 2416 179628 12 4 2 79 chain 29150 chr6 171115067 + 19774408 19774724 L1PA3long 6157 - 171 487 88316 316 chain 14653 chr6 171115067 + 19774731 19774892 L1PA3long 6157 + 5995 6156 142415 161 chain 5252 chr6 171115067 + 19778270 19778357 L1PB1 5432 - 5 86 192494 5 2 0 4 1 0 14 1 0 12 1 0 22 2 1 23 chain 24417 chr6 171115067 + 19801235 19801539 AluSp 311 - 1 302 107985 29 3 0 149 1 0 63 0 1 59 chain 102869 chr6 171115067 + 19806378 19807762 LTR12C 1709 - 1 1709 36032 83 1 0 33 4 14 172 5 3 168 18 11 19 0 7 51 16 15 14 4 2 4 1 0 131 0 278 322 0 43 338 chain 125945 chr6 171115067 + 19853640 19855220 LTR12C 1709 - 0 1709 29119 64 0 4 61 0 2 67 0 4 272 7 11 22 19 21 69 1 0 28 7 1 159 7 1 56 0 118 165 6 13 310 0 1 260 chain 33496 chr6 171115067 + 19897478 19897897 L1PA8 5853 + 5438 5853 78415 124 1 0 48 2 0 68 2 4 11 1 0 47 2 1 19 1 0 93 chain 3249 chr6 171115067 + 19907441 19907478 Tigger3b 1229 - 1138 1175 220037 37 chain 179952 chr6 171115067 + 19938891 19941379 SVA_D 2077 + 6 2059 20997 43 11 0 849 64 14 30 85 0 6 5 0 55 1 0 31 1 2 7 0 1 36 78 0 12 0 1 107 205 0 157 1 0 30 15 14 54 2 1 603 chain 4748 chr6 171115067 + 19939888 19939944 SVA_D 2077 + 1256 1312 90849 56 chain 1908 chr6 171115067 + 19939944 19939973 SVA_D 2077 + 958 987 63344 29 chain 5132 chr6 171115067 + 19940115 19940193 SVA_D 2077 + 1129 1207 63344 78 chain 13488 chr6 171115067 + 19940312 19940517 SVA_D 2077 + 1327 1425 63344 1 139 27 8 0 1 24 0 1 4 15 18 14 chain 3506 chr6 171115067 + 19940313 19940438 SVA_D 2077 + 811 896 126959 46 40 0 39 chain 24835 chr6 171115067 + 19948781 19949150 THE1C 375 - 0 375 105694 26 1 0 11 1 2 138 6 0 16 0 3 34 3 7 13 6 7 25 4 6 21 0 2 64 chain 32946 chr6 171115067 + 19958251 19958616 L1PA4 6152 + 5782 6152 79297 359 0 5 6 chain 3284 chr6 171115067 + 20021021 20021057 L1MA8 2339 + 2160 2196 219279 36 chain 15176 chr6 171115067 + 20033008 20033236 LTR12C 1709 + 769 1037 140838 68 1 0 50 22 22 67 0 41 20 chain 7280 chr6 171115067 + 20063159 20063244 LOR1a 498 - 13 98 175577 85 chain 368445 chr6 171115067 + 20075391 20082491 L1PB1 5432 + 26 5422 11142 125 24 22 59 26 28 9 0 1 36 12 7 38 1 5 92 46 41 83 0 1 4 2 1 145 1 2 37 45 43 45 0 3 294 0 1 185 21 29 16 19 22 9 0 2 24 4 9 232 0 1 4 1 0 81 4 1 392 1 0 4 0 1 208 0 4 470 3 0 364 0 2 48 0 8 44 9 18 403 13 6 154 46 36 37 1 3 146 16 0 15 0 18 112 0 1 253 0 6 93 18 17 21 9 10 34 1496 18 25 4 1 368 3 0 8 223 3 20 1 0 10 1 0 12 22 16 48 2 1 16 2 1 44 1 0 14 1 0 4 2 0 7 49 39 24 1 0 22 1 0 12 1 0 18 chain 132486 chr6 171115067 + 20080029 20081482 L1PA3long 6157 + 4704 6157 27434 1453 chain 8961 chr6 171115067 + 20095226 20095368 MLT1B 390 + 28 176 165822 44 21 27 77 chain 9569 chr6 171115067 + 20104015 20104157 Tigger3b 1229 + 708 850 162744 17 1 0 40 7 8 77 chain 18983 chr6 171115067 + 20120674 20120917 AluSq2 311 + 57 299 130150 76 0 1 121 0 1 36 3 0 7 chain 28502 chr6 171115067 + 20131474 20131854 THE1C 375 + 0 375 91175 179 0 2 5 18 13 150 2 0 26 chain 7729 chr6 171115067 + 20156968 20157072 L1P1 4361 - 20 122 172716 12 2 1 23 1 0 66 chain 8841 chr6 171115067 + 20179905 20180169 L1PA11 4918 - 289 518 166429 18 47 33 11 2 0 13 29 24 10 8 3 9 4 0 20 1 0 15 2 0 66 2 0 7 chain 27573 chr6 171115067 + 20183990 20184340 THE1A 353 - 0 349 94423 155 1 0 88 1 0 83 0 1 22 chain 47052 chr6 171115067 + 20197473 20198093 MER4A1_ 611 + 1 611 61163 50 0 2 73 1 2 11 1 2 135 0 1 17 17 0 51 0 1 41 1 0 165 0 1 44 0 1 13 chain 26973 chr6 171115067 + 20233875 20234295 LTR12C 1709 + 773 1198 96365 64 1 2 37 5 3 224 46 15 15 6 43 22 chain 83921 chr6 171115067 + 20239113 20240334 LTR12C 1709 + 0 1708 41943 5 0 1 330 21 64 49 0 5 10 6 5 91 0 3 100 1 278 130 0 47 106 11 4 74 23 43 51 0 102 60 2 0 52 39 38 60 chain 124567 chr6 171115067 + 20244033 20245564 LTR12C 1709 - 0 1709 29517 196 1 5 144 4 17 119 0 4 107 2 0 6 1 0 115 0 159 570 0 1 266 chain 2600 chr6 171115067 + 20245564 20245654 LTR8A 794 - 286 365 231693 17 46 34 8 0 1 19 chain 23953 chr6 171115067 + 20247477 20247751 AluY 311 + 14 296 110597 131 0 8 143 chain 18394 chr6 171115067 + 20260202 20260480 LTR12C 1709 + 769 1037 131812 68 1 0 118 50 0 22 1 42 18 chain 40828 chr6 171115067 + 20272644 20273249 MER41B 635 - 21 633 68132 133 50 49 215 7 14 66 8 9 126 chain 29749 chr6 171115067 + 20278822 20279254 MER4A1 472 + 0 454 85660 131 0 1 92 40 62 137 1 0 31 chain 5762 chr6 171115067 + 20282259 20282329 U3 216 + 0 70 187515 70 chain 27026 chr6 171115067 + 20292965 20293413 MER1A 529 - 40 488 96199 17 35 34 23 1 0 172 6 5 63 3 0 5 0 3 60 24 27 39 chain 19823 chr6 171115067 + 20300258 20300530 AluY 311 + 43 297 127738 44 9 0 45 0 1 155 10 0 9 chain 110564 chr6 171115067 + 20301317 20302771 LTR12C 1709 + 6 1709 34062 190 6 15 68 4 0 7 5 10 423 0 118 157 2 0 80 1 0 38 1 0 5 3 1 106 0 4 108 1 9 51 0 102 114 22 21 9 0 14 53 chain 7952 chr6 171115067 + 20308858 20308948 L1PA3long 6157 + 6052 6142 171321 90 chain 15387 chr6 171115067 + 20310124 20310316 L1PB4 2604 + 2179 2371 140242 192 chain 18689 chr6 171115067 + 20318075 20318296 L1PA4 6152 - 11 232 130975 221 chain 3102 chr6 171115067 + 20319773 20319809 LTR12C 1709 + 683 719 222898 36 chain 2294 chr6 171115067 + 20321092 20321119 LTR12C 1709 + 810 837 235434 27 chain 20874 chr6 171115067 + 20324778 20325069 AluSz 310 + 11 298 124380 89 15 13 169 2 0 16 chain 3443 chr6 171115067 + 20331385 20331427 LTR67B 553 + 63 105 216323 42 chain 4034 chr6 171115067 + 20331446 20331499 MADE1 96 + 1 70 206862 45 0 16 8 chain 27625 chr6 171115067 + 20339594 20339882 AluYd8 298 + 0 288 94283 288 chain 26449 chr6 171115067 + 20355275 20355706 Tigger2 2703 + 2285 2703 98244 78 1 3 42 6 0 7 12 18 63 0 3 42 0 1 116 46 27 18 chain 3827 chr6 171115067 + 20389699 20389742 MER3 215 - 33 76 209967 43 chain 14137 chr6 171115067 + 20390732 20390960 MER30 238 - 0 238 144080 100 2 0 9 4 22 57 0 1 5 18 0 8 9 20 16 chain 17144 chr6 171115067 + 20390960 20391544 Tigger1 2417 - 544 791 135190 115 350 14 53 4 3 62 chain 16915 chr6 171115067 + 20421917 20422111 7SLRNA 320 - 119 313 135810 194 chain 5730 chr6 171115067 + 20430377 20430460 MER53 195 + 24 106 187834 50 2 1 31 chain 8340 chr6 171115067 + 20436582 20436679 MER30 238 - 2 101 169174 47 0 2 50 chain 94794 chr6 171115067 + 20451240 20452563 L1PA13 3608 - 120 1504 38143 18 7 6 16 3 1 6 2 0 45 2 0 5 1 0 54 3 2 41 0 51 50 9 10 15 3 14 22 1 0 58 0 5 5 2 0 130 1 0 330 0 2 172 0 7 127 0 3 18 20 14 157 chain 52272 chr6 171115067 + 20465719 20466809 L1PB1 5432 - 12 826 57447 16 1 0 13 1 0 21 1 0 23 3 1 14 1 0 5 2 0 19 10 13 15 1 0 43 1 0 16 2 1 53 2 0 8 2 0 3 2 0 10 1 0 6 0 2 24 1 0 11 3 0 50 0 1 118 2 1 97 0 3 15 308 2 111 0 48 30 4 0 21 chain 24134 chr6 171115067 + 20488945 20489222 AluSc5 308 + 1 279 109560 234 0 1 43 chain 24964 chr6 171115067 + 20519091 20519392 AluSp 311 - 9 310 104983 301 chain 52482 chr6 171115067 + 20525293 20525945 L1PA6 6164 + 5507 6162 57311 204 5 7 284 15 16 144 chain 28803 chr6 171115067 + 20544546 20544852 AluYg6 310 + 0 306 89886 306 chain 2805 chr6 171115067 + 20550147 20550184 L1MC4a 1092 - 681 718 228675 37 chain 534746 chr6 171115067 + 20590582 20597332 L1PA7 6471 - 2 6471 3622 6 5 0 52 4 0 279 0 1 507 0 3 341 18 0 263 1 2 433 8 22 125 8 0 63 303 0 539 1 0 285 4 8 9 0 2 6 12 0 316 0 1 498 11 9 427 0 9 347 0 1 169 6 14 21 12 3 312 0 3 311 1 14 109 1 0 547 3 4 29 0 4 60 0 17 298 chain 179956 chr6 171115067 + 20615011 20616937 L1PA2 6032 - 2 1928 20996 1926 chain 91823 chr6 171115067 + 20617651 20618747 L1PA6 6164 - 2 1101 39019 9 2 0 614 4 5 212 0 4 255 chain 2947 chr6 171115067 + 20622922 20622953 U2 167 - 136 167 226129 31 chain 90948 chr6 171115067 + 20651230 20652309 L1PA10 4194 - 44 1124 39311 34 3 0 760 0 4 90 0 1 64 1 0 127 chain 7710 chr6 171115067 + 20677032 20677135 Tigger3b 1229 + 1048 1148 172871 52 3 0 48 chain 6373 chr6 171115067 + 20684214 20684390 L1MC1 2226 - 270 443 182226 32 86 83 58 chain 33737 chr6 171115067 + 20721200 20721618 L1PA5 6144 - 6 424 78032 132 7 0 9 1 8 269 chain 29794 chr6 171115067 + 20765376 20765686 AluYa5 310 - 0 310 85462 310 chain 40453 chr6 171115067 + 20798685 20799156 L1PA5 6144 + 5675 6143 68659 460 3 0 8 chain 97520 chr6 171115067 + 20831287 20832535 HSMAR1 1287 - 0 1261 37417 126 0 4 480 4 1 6 0 3 96 0 4 402 1 6 133 chain 41331 chr6 171115067 + 20847997 20848597 MER51A 677 - 0 677 67499 62 1 0 289 0 105 22 10 0 20 17 0 80 2 5 9 0 3 5 11 5 72 chain 29399 chr6 171115067 + 20875249 20875562 AluYb8 318 + 0 314 87084 4 0 1 309 chain 31410 chr6 171115067 + 20888209 20888591 L1PA6 6164 - 2 382 81795 8 2 0 372 chain 137023 chr6 171115067 + 20888603 20890150 L1PA4 6152 - 1 1560 26636 1220 0 13 223 2 1 102 chain 6390 chr6 171115067 + 20907078 20907410 L1MB3 1562 + 1264 1513 182097 42 23 22 14 195 114 30 1 0 27 chain 21034 chr6 171115067 + 20919629 20919882 L1PA7 6471 - 15 332 123792 4 0 1 138 0 63 111 chain 37616 chr6 171115067 + 20924248 20925126 Tigger1 2417 + 491 1026 72667 52 376 28 343 0 1 16 8 12 83 chain 8971 chr6 171115067 + 20924323 20924446 Tigger1 2417 + 571 696 165774 14 8 10 101 chain 3254 chr6 171115067 + 20924602 20924652 Tigger1 2417 + 491 543 219925 34 4 6 12 chain 29612 chr6 171115067 + 20936472 20936780 AluYa5 310 - 2 310 86168 308 chain 7721 chr6 171115067 + 20945441 20945631 Tigger4a 237 + 32 222 172785 31 6 5 67 41 48 11 14 8 20 chain 6323 chr6 171115067 + 20947457 20947538 MER47A 366 - 0 84 182618 62 0 3 19 chain 20697 chr6 171115067 + 20969388 20969704 Tigger2a 444 - 48 373 124980 42 0 3 47 17 22 77 0 1 96 19 19 18 chain 6584 chr6 171115067 + 20976157 20976477 L1MC1 2226 - 74 369 180582 13 1 0 10 17 7 18 81 68 44 87 91 12 5 0 32 chain 67637 chr6 171115067 + 21029702 21030718 L1PA8 5853 + 4835 5847 49392 175 0 2 126 37 36 132 9 12 60 0 1 90 4 0 5 0 1 89 1 0 46 2 0 7 1 5 21 3 0 27 37 35 34 6 5 16 1 0 87 chain 12742 chr6 171115067 + 21038822 21039021 MER30 238 + 0 237 149280 18 1 19 61 10 0 10 3 31 20 0 2 76 chain 208726 chr6 171115067 + 21056387 21058957 L1PA10 4194 - 229 2813 18587 474 0 1 228 0 1 238 0 1 321 0 3 30 0 4 14 5 1 218 0 2 6 0 6 1036 chain 4419 chr6 171115067 + 21070515 21070569 MLT1F-int 966 - 339 393 201703 54 chain 21827 chr6 171115067 + 21092498 21092787 L1PA8 5853 - 6 287 120912 87 1 0 19 2 1 51 3 0 10 1 0 69 2 0 44 chain 5229 chr6 171115067 + 21125933 21125999 THE1D 372 + 301 372 192736 6 0 5 60 chain 27575 chr6 171115067 + 21141006 21141358 THE1A 353 - 0 353 94416 161 1 0 82 16 18 92 chain 13034 chr6 171115067 + 21160945 21161145 L1PA8 5853 - 0 199 148105 93 1 0 19 7 9 40 15 13 25 chain 30427 chr6 171115067 + 21192233 21192551 AluYb8 318 - 0 318 83606 318 chain 47035 chr6 171115067 + 21266029 21266688 L1PA16 3655 + 2931 3593 61175 19 3 6 41 0 3 204 2 4 50 11 12 21 2 0 25 3 2 260 3 0 15 chain 39742 chr6 171115067 + 21282759 21283929 MER41C 542 + 0 542 69696 207 0 1 42 1 2 59 4 5 17 6 8 79 633 0 122 chain 23467 chr6 171115067 + 21291272 21291570 AluSg7 307 - 10 307 113282 142 3 6 17 1 0 22 4 1 109 chain 141164 chr6 171115067 + 21319329 21321038 L1PA7 6471 + 4762 6470 25960 183 5 4 35 8 9 628 1 0 714 6 5 51 0 1 78 chain 18584 chr6 171115067 + 21332678 21332896 AluY 311 + 93 311 131274 218 chain 128171 chr6 171115067 + 21344891 21346461 L1PA6 6164 + 4598 6160 28531 428 0 1 203 8 7 604 6 1 312 3 0 6 chain 40957 chr6 171115067 + 21361722 21362173 LTR7 482 - 0 482 67968 187 0 31 264 chain 303678 chr6 171115067 + 21363431 21367045 HERVH-int 3825 - 0 3825 13260 492 3 213 420 0 4 980 4 31 349 7 8 549 1 0 49 31 9 65 1 0 18 21 0 7 3 0 14 0 13 24 1 0 10 1 0 38 5 0 310 0 11 211 chain 39362 chr6 171115067 + 21367047 21367488 LTR7 482 - 0 482 70232 219 1 32 10 0 10 211 chain 44532 chr6 171115067 + 21401785 21402341 MER41A 554 + 0 554 63546 70 4 0 32 0 2 450 chain 37451 chr6 171115067 + 21410117 21410598 L1PA8 5853 + 5378 5853 72889 186 1 0 44 2 0 71 1 0 13 6 5 43 2 1 19 1 0 44 0 1 48 chain 7654 chr6 171115067 + 21412728 21412836 MER85 139 - 0 120 173195 29 2 14 77 chain 17940 chr6 171115067 + 21416164 21416376 AluSp 311 + 74 286 133005 212 chain 4138 chr6 171115067 + 21418987 21419064 MLT2B1 522 - 433 522 205391 31 15 27 31 chain 33288 chr6 171115067 + 21421964 21422345 L1PA7 6471 - 18 400 78749 192 0 1 189 chain 24117 chr6 171115067 + 21469889 21470176 AluSp 311 - 24 311 109649 287 chain 21089 chr6 171115067 + 21494648 21495004 LTR1 825 + 471 825 123579 66 1 0 171 0 18 9 33 7 17 32 39 27 chain 26559 chr6 171115067 + 21498945 21499253 AluY 311 + 0 304 97809 87 5 0 45 0 1 171 chain 54355 chr6 171115067 + 21543151 21543829 L1PA8 5853 - 0 671 56130 93 1 0 19 2 1 47 1 0 14 1 0 70 2 0 47 1 0 380 chain 7606 chr6 171115067 + 21544189 21544282 L1PA8 5853 + 4985 5080 173504 22 0 2 71 chain 25996 chr6 171115067 + 21545720 21546019 AluY 311 + 11 307 100031 146 3 0 150 chain 146080 chr6 171115067 + 21550892 21553078 LTR12C 1709 - 0 1709 25152 481 0 4 107 2 0 6 1 0 274 477 0 405 1 0 432 chain 2516 chr6 171115067 + 21551763 21551791 LTR12C 1709 - 1031 1059 136115 28 chain 4984 chr6 171115067 + 21551791 21551847 LTR12C 1709 - 940 996 137766 56 chain 3499 chr6 171115067 + 21551847 21551886 LTR12C 1709 - 877 916 137411 39 chain 14678 chr6 171115067 + 21551886 21552124 LTR12C 1709 - 597 757 121129 102 43 6 23 41 0 29 chain 3678 chr6 171115067 + 21551988 21552029 LTR12C 1709 - 1018 1059 137411 41 chain 2736 chr6 171115067 + 21552054 21552085 LTR12C 1709 - 646 677 177036 31 chain 10319 chr6 171115067 + 21552124 21552240 LTR12C 1709 - 597 713 119591 116 chain 158693 chr6 171115067 + 21562481 21565337 L1MA3 4352 - 506 2758 23504 167 6 7 112 317 0 179 1 0 261 0 1 54 9 7 10 0 3 150 0 5 298 1 0 9 1 0 26 0 1 38 6 1 98 16 17 30 1 5 53 1 0 82 14 22 35 0 3 20 308 0 14 0 1 84 10 6 280 0 2 54 1 0 4 10 17 21 1 2 14 1 0 59 chain 22342 chr6 171115067 + 21576859 21577127 AluSc8 310 + 2 275 118739 107 1 3 20 0 3 140 chain 30611 chr6 171115067 + 21583388 21583783 L1PB 1623 - 1021 1414 83185 116 2 1 74 1 0 8 2 0 30 0 3 101 1 0 60 chain 21915 chr6 171115067 + 21606015 21606277 AluY 311 + 38 299 120562 160 2 1 100 chain 23876 chr6 171115067 + 21608313 21608603 AluSp 311 + 0 292 111047 99 0 2 191 chain 7414 chr6 171115067 + 21609775 21609925 LTR12C 1709 - 879 979 174688 65 50 0 35 chain 43020 chr6 171115067 + 21643044 21644552 Tigger1 2417 + 1426 2414 65399 248 0 1 16 902 372 221 1 7 44 10 13 66 chain 7274 chr6 171115067 + 21648654 21648768 L1MB3 1562 + 1442 1555 175622 82 10 9 22 chain 8181 chr6 171115067 + 21689809 21689920 LTR9B 643 - 85 198 170059 75 6 8 30 chain 6111 chr6 171115067 + 21697779 21697853 MLT1B 390 - 2 76 184336 74 chain 23619 chr6 171115067 + 21730509 21730788 AluSp 311 - 24 302 112475 155 1 0 123 chain 4153 chr6 171115067 + 21732364 21732472 L1MB3 1562 - 12 118 205202 13 35 34 34 2 1 24 chain 23524 chr6 171115067 + 21736947 21737236 AluSg7 307 - 14 307 112993 27 0 2 5 1 2 130 0 1 126 chain 6504 chr6 171115067 + 21756403 21756475 MER82 654 + 49 121 181207 72 chain 107826 chr6 171115067 + 21761208 21762679 LTR12C 1709 + 0 1709 34772 125 0 1 4 0 4 6 6 1 152 1 2 166 13 10 108 1 0 24 3 4 42 0 280 183 1 0 7 2 0 105 11 4 88 29 0 124 0 1 120 1 0 57 26 25 66 chain 23832 chr6 171115067 + 21789351 21789650 AluSq10 312 + 0 297 111302 47 8 6 244 chain 18701 chr6 171115067 + 21790328 21790559 L1PA7 6471 + 6232 6470 130942 39 1 8 31 2 0 10 0 2 148 chain 156310 chr6 171115067 + 21796368 21798643 SVA_D 2077 - 0 2067 23822 41 0 6 548 0 98 44 1 0 108 49 0 72 0 1 39 0 1 39 4 0 31 380 87 13 0 2 8 5 0 21 2 0 15 2 0 20 0 40 75 23 20 20 0 3 715 chain 3914 chr6 171115067 + 21797110 21797159 SVA_D 2077 - 972 1072 82387 20 0 51 29 chain 24197 chr6 171115067 + 21797361 21797640 SVA_F 1814 - 523 797 109235 17 1 0 110 4 0 147 chain 958 chr6 171115067 + 21797681 21797724 SVA_D 2077 - 755 798 132863 43 chain 24547 chr6 171115067 + 21806197 21806486 AluSp 311 - 23 311 107269 168 1 0 120 chain 23406 chr6 171115067 + 21811202 21811501 AluSp 311 + 11 306 113616 19 4 0 276 chain 61133 chr6 171115067 + 21851299 21852201 SVA_E 1901 - 338 1080 52280 280 40 0 106 98 0 82 1 0 93 47 0 75 1 0 4 17 43 43 0 1 15 chain 7544 chr6 171115067 + 21851725 21851823 SVA_E 1901 - 850 948 77378 98 chain 3618 chr6 171115067 + 21851999 21852046 SVA_E 1901 - 1071 1227 77378 3 0 109 44 chain 46784 chr6 171115067 + 21852240 21852794 SVA_F 1814 - 698 1405 61385 122 0 111 18 0 40 225 0 3 15 4 3 170 chain 394677 chr6 171115067 + 21875160 21881446 L1PB1 5432 + 59 5419 10292 147 1 0 19 1 0 4 0 1 176 1 0 155 0 3 44 2 1 18 4 5 645 9 13 104 39 24 89 0 1 329 0 1 511 0 1 144 6 0 67 0 3 13 0 5 260 2 0 278 1 0 17 25 26 102 0 1 11 303 0 17 2 1 37 0 1 110 0 5 157 295 0 47 1 20 64 7 2 139 0 1 62 5 0 95 322 0 58 4 1 182 0 1 299 4 3 30 8 9 196 4 0 209 23 24 5 1 0 51 1 2 10 3 0 6 19 37 9 2 0 53 2 1 16 1 0 44 2 1 12 30 18 12 14 11 11 2 0 24 1 0 21 1 0 13 1 0 15 chain 22243 chr6 171115067 + 21890412 21890694 AluSp 311 + 19 302 119154 109 0 3 142 1 0 4 6 5 20 chain 24098 chr6 171115067 + 21895025 21895339 AluY 311 + 0 309 109753 17 2 0 112 3 0 180 chain 27316 chr6 171115067 + 21944034 21944340 AluSp 311 - 5 311 95218 306 chain 4877 chr6 171115067 + 21952948 21953182 MLT1A0 366 + 48 281 196531 16 5 0 27 149 153 37 chain 13169 chr6 171115067 + 21976763 21977279 L1PA8 5853 + 5654 5853 147583 24 2 1 9 8 7 45 2 1 19 314 0 93 chain 23539 chr6 171115067 + 21983875 21984148 AluSp 311 - 34 307 112911 273 chain 23411 chr6 171115067 + 22120480 22122346 LTR49 580 - 48 580 113591 56 1422 60 28 15 45 119 0 1 4 4 5 47 2 0 11 24 21 41 21 23 4 1 0 67 chain 4747 chr6 171115067 + 22162143 22162247 MER3 215 + 85 207 197948 28 38 56 38 chain 57927 chr6 171115067 + 22162813 22163907 L1PB1 5432 - 15 875 54018 13 1 0 13 1 0 21 1 0 24 2 0 6 9 8 5 2 0 30 14 1 15 1 0 45 1 0 15 5 4 47 3 1 10 11 7 5 1 0 9 1 0 10 0 3 11 5 0 7 210 6 82 0 6 385 3 0 15 0 1 55 chain 541053 chr6 171115067 + 22166582 22172705 L1PA4 6152 - 0 6122 2661 590 16 0 261 0 3 1282 1 0 839 2 0 142 0 1 646 0 4 121 1 3 535 0 1 566 0 7 1121 chain 553521 chr6 171115067 + 22175069 22181103 L1PA2 6032 - 3 6032 1003 589 16 0 612 0 1 1662 0 1 104 1 0 2741 8 18 301 chain 13897 chr6 171115067 + 22193512 22193663 L1PA5 6144 + 5984 6135 144927 151 chain 25123 chr6 171115067 + 22227477 22227751 AluYa5 310 + 35 308 104161 4 1 0 269 chain 16922 chr6 171115067 + 22235813 22236173 THE1B 368 + 0 366 135787 15 2 0 29 6 7 54 10 12 50 74 77 26 9 11 85 chain 277418 chr6 171115067 + 22240722 22244760 L1PB1 5432 + 1338 5296 14781 49 10 14 116 1 9 92 0 1 50 0 1 663 1 0 107 10 20 35 9 1 26 2 4 123 0 1 168 0 1 7 2 0 15 2 1 92 10 12 263 0 2 266 1 15 150 1 6 76 25 8 230 4 5 181 0 1 156 1 0 24 1 2 28 6 2 78 0 1 40 73 35 47 12 11 5 0 1 19 10 14 16 8 0 93 0 4 86 0 1 286 3 7 11 56 0 18 1 0 8 24 19 7 2 0 44 1 0 8 2 1 12 12 11 37 1 0 15 chain 10116 chr6 171115067 + 22253283 22253443 MER20 218 - 22 190 160009 18 9 8 67 5 14 61 chain 57170 chr6 171115067 + 22262150 22262778 L1PA3long 6157 - 0 628 54423 628 chain 7128 chr6 171115067 + 22276669 22276746 L1PA16 3655 - 1302 1379 176563 77 chain 15983 chr6 171115067 + 22312392 22312761 THE1B 368 - 0 368 138398 56 1 2 59 92 89 27 47 48 87 chain 3649 chr6 171115067 + 22318265 22318306 LTR12C 1709 - 872 913 212813 41 chain 13076 chr6 171115067 + 22340488 22340683 MER30 238 + 30 238 147932 66 24 37 105 chain 6297 chr6 171115067 + 22356038 22356139 LTR12C 1709 - 832 973 143831 27 0 40 74 chain 24228 chr6 171115067 + 22356149 22356540 LTR12C 1709 - 623 939 109051 64 78 0 70 0 4 111 1 0 67 chain 3304 chr6 171115067 + 22356213 22356266 LTR12C 1709 - 1006 1059 143831 53 chain 11754 chr6 171115067 + 22370676 22370861 LTR9B 643 + 461 643 153246 15 6 5 107 17 15 40 chain 143399 chr6 171115067 + 22374141 22376173 HUERS-P3b-int 2065 + 13 2031 25578 81 6 0 167 0 1 47 5 6 264 0 1 40 0 1 6 2 1 59 4 0 69 93 94 186 1 6 177 1 2 168 0 1 69 0 1 11 1 0 42 10 8 80 2 0 13 2 1 23 1 0 43 8 7 40 3 1 73 0 2 16 4 1 57 7 8 7 5 0 48 1 0 90 chain 193488 chr6 171115067 + 22376405 22378722 L1PA7 6471 - 5 2325 19737 852 1 0 396 5 6 215 0 2 5 2 0 160 1 0 158 6 10 516 chain 488383 chr6 171115067 + 22384288 22390466 L1PA8A 6298 - 15 6221 7424 135 0 2 585 0 1 187 0 10 50 0 3 416 3 2 7 0 1 4 0 4 433 1 2 70 0 1 68 0 1 88 1 0 131 0 2 205 1 2 398 1 0 23 1 3 32 0 4 444 0 4 206 5 6 109 0 1 253 0 2 228 0 6 842 5 6 82 10 2 79 8 11 20 6 9 74 1 0 60 0 4 145 1 0 305 1 0 13 1 0 67 1 0 3 1 0 10 1 0 17 2 0 53 0 16 6 8 0 64 2 0 8 5 0 16 1 0 7 1 0 5 12 10 12 1 0 4 2 0 15 23 32 9 1 0 19 19 10 17 3 0 25 chain 22307 chr6 171115067 + 22392094 22392354 AluSp 311 - 46 306 118886 260 chain 2920 chr6 171115067 + 22409099 22409131 L1MC1 2226 + 2152 2184 226675 32 chain 15281 chr6 171115067 + 22412899 22413107 MER30 238 + 0 234 140533 103 8 0 9 0 28 13 0 6 75 chain 18394 chr6 171115067 + 22435911 22436141 AluY 311 + 69 305 131809 56 1 2 48 0 9 52 0 1 61 5 0 7 chain 19712 chr6 171115067 + 22436919 22437193 Tigger3b 1229 - 610 893 128061 33 0 5 15 0 3 9 0 1 31 4 8 135 4 0 43 chain 438233 chr6 171115067 + 22459982 22464783 L1PA3long 6157 - 11 4810 9099 339 2 0 4460 chain 16324 chr6 171115067 + 22473173 22473382 L1PA7 6471 - 5 215 137423 149 1 2 59 chain 22020 chr6 171115067 + 22475111 22475400 L1PA8 5853 + 5570 5853 120139 38 2 0 74 1 0 6 1 0 47 7 6 19 2 1 92 chain 79580 chr6 171115067 + 22523728 22524774 MER11C 1089 + 0 1073 43792 246 0 9 62 4 8 61 1 0 146 47 46 42 0 10 39 0 1 20 0 4 5 1 0 38 0 1 324 0 1 10 chain 94188 chr6 171115067 + 22554610 22555649 L1PA4 6152 - 6 1045 38304 1039 chain 31360 chr6 171115067 + 22555649 22555993 L1PA4 6152 + 4751 5095 81428 344 chain 4125 chr6 171115067 + 22587587 22587652 Zaphod 902 + 821 898 205592 51 1 13 13 chain 11764 chr6 171115067 + 22609134 22609371 MER2 342 + 0 253 153198 66 51 66 83 18 19 19 chain 3761 chr6 171115067 + 22621129 22621178 MADE1 96 + 46 93 210950 24 2 0 23 chain 3975 chr6 171115067 + 22626447 22626674 MER30 238 + 0 230 207759 16 18 0 8 13 151 15 117 0 40 chain 2889 chr6 171115067 + 22628861 22628893 U5 65 + 8 40 227203 32 chain 6028 chr6 171115067 + 22634856 22634931 Tigger7 736 - 329 404 185003 75 chain 30683 chr6 171115067 + 22641331 22641764 MLT2A1 477 + 2 477 83066 80 0 1 80 10 7 9 0 1 23 0 1 23 0 1 48 0 3 99 4 6 17 3 39 37 chain 30185 chr6 171115067 + 22643895 22644302 MER48 407 - 2 403 84231 59 0 1 207 4 5 47 16 8 43 1 0 4 0 1 26 chain 15701 chr6 171115067 + 22679864 22680045 L1PA7 6471 - 6 187 139262 181 chain 39659 chr6 171115067 + 22690030 22690498 L1PA7 6471 + 6000 6466 69814 459 2 0 7 chain 75751 chr6 171115067 + 22762062 22763004 L1PA10 4194 - 110 1061 45619 218 1 0 212 0 4 12 0 1 4 1 0 395 0 5 54 0 1 45 chain 29171 chr6 171115067 + 22782665 22782973 AluYa5 310 - 3 310 88193 214 1 0 93 chain 92910 chr6 171115067 + 22813643 22815318 L1MA2 4263 - 152 1489 38682 7 1 0 34 0 1 11 11 0 93 13 11 90 2 1 47 0 1 9 3 0 85 0 1 57 1 0 72 13 7 27 0 1 100 0 4 77 0 1 91 0 1 30 0 1 182 322 4 23 21 17 48 4 1 66 1 2 134 chain 29386 chr6 171115067 + 22814708 22815016 AluYf4 310 - 2 310 87140 308 chain 155843 chr6 171115067 + 22835984 22838102 SVA_D 2077 + 55 2056 23877 159 1 2 507 0 3 35 3 0 137 321 100 13 0 51 158 46 0 92 0 98 646 chain 17249 chr6 171115067 + 22836854 22837130 SVA_F 1814 + 904 1116 134929 44 77 14 39 1 0 115 chain 3201 chr6 171115067 + 22837319 22837364 SVA_D 2077 + 993 1093 82976 38 0 55 7 chain 51586 chr6 171115067 + 22870113 22870685 L1PA3long 6157 + 5588 6157 57898 564 3 0 5 chain 31242 chr6 171115067 + 22870698 22871078 L1PA7 6471 + 6086 6465 82092 51 1 0 161 11 11 156 chain 3692 chr6 171115067 + 22890057 22890166 MER20 218 - 62 186 212051 29 54 69 26 chain 25694 chr6 171115067 + 22893391 22893699 AluY 311 + 8 310 101306 110 6 0 192 chain 27940 chr6 171115067 + 22915603 22915912 L1PA3long 6157 - 760 1069 93204 309 chain 67152 chr6 171115067 + 22915921 22916660 L1PA3long 6157 + 5418 6157 49588 739 chain 68399 chr6 171115067 + 22950994 22951761 L1PA4 6152 + 5383 6152 49090 434 0 1 183 0 1 150 chain 185893 chr6 171115067 + 22981488 22983951 L1PA10 4194 + 376 2864 20421 19 0 1 7 1 0 32 5 20 27 16 8 132 0 1 37 1 0 738 0 1 219 1 0 21 7 9 116 2 1 250 7 11 101 4 11 45 0 1 42 0 4 378 3 4 10 1 0 236 0 1 5 chain 15889 chr6 171115067 + 22984287 22984494 L1P3 4156 - 64 271 138684 161 3 0 6 1 4 36 chain 23013 chr6 171115067 + 22984495 22984794 L1PA8A 6298 + 5990 6291 115563 31 0 1 152 9 10 107 chain 336576 chr6 171115067 + 22987738 22992206 L1PA7 6471 - 4 4195 11982 46 0 1 94 5 7 276 0 2 111 1 0 121 311 0 97 6 3 78 3 10 122 0 1 253 0 1 294 5 6 266 0 12 117 2 0 610 4 0 276 0 1 43 9 7 89 4 7 197 0 6 7 0 1 4 1 0 247 0 1 160 0 4 130 0 4 479 chain 24132 chr6 171115067 + 23000635 23001050 L1PA14 3548 + 3055 3456 109579 54 13 9 13 2 0 6 1 0 4 1 0 79 6 5 80 0 1 24 15 13 29 9 7 19 1 0 16 2 1 41 chain 13282 chr6 171115067 + 23008836 23009056 MER30 238 + 0 238 147163 12 24 29 62 8 24 62 3 0 49 chain 29799 chr6 171115067 + 23019680 23019991 AluYb8 318 - 7 318 85437 311 chain 23918 chr6 171115067 + 23026868 23027153 AluSp 311 - 25 310 110822 285 chain 30471 chr6 171115067 + 23029240 23029643 LTR7 482 + 2 475 83485 67 4 37 7 0 5 106 8 40 211 chain 37555 chr6 171115067 + 23047097 23047881 LTR3B_ 500 + 19 500 72747 137 310 6 137 4 5 196 chain 29463 chr6 171115067 + 23053193 23053513 AluYb8 318 - 4 318 86783 8 6 0 306 chain 539257 chr6 171115067 + 23058606 23065197 L1PA4 6152 + 3 6143 2938 139 8 24 309 2 1 449 4 0 307 5 4 177 6 5 416 466 0 102 0 4 145 0 1 2584 9 10 885 0 1 436 1 0 141 chain 38144 chr6 171115067 + 23060472 23060894 SVA_A 1864 - 0 422 71922 422 chain 90811 chr6 171115067 + 23072467 23073768 L1PA14 3548 - 674 1934 39352 19 60 1 21 7 15 90 7 5 35 1 0 152 2 1 120 0 1 12 0 1 107 0 3 152 6 7 100 0 4 52 2 0 8 5 8 159 1 0 58 0 1 101 3 6 21 chain 25555 chr6 171115067 + 23075337 23075694 THE1B 368 - 0 368 101954 75 1 0 112 11 9 117 9 23 32 chain 29162 chr6 171115067 + 23104339 23104650 AluYb8 318 + 0 311 88241 311 chain 42226 chr6 171115067 + 23106637 23107144 L1PA5 6144 + 5627 6134 66366 183 0 1 74 1 0 249 chain 86560 chr6 171115067 + 23109408 23111409 HUERS-P3b-int 2065 - 34 2052 40946 55 0 8 26 15 15 19 31 29 39 29 25 14 2 0 43 556 669 52 26 0 187 4 3 19 1 0 54 1 0 193 3 0 226 1 13 26 76 0 17 4 0 17 0 3 94 28 32 49 1 0 5 0 1 4 4 0 21 7 8 52 chain 314133 chr6 171115067 + 23120212 23124091 L1PA7 6471 - 15 3913 12848 89 0 3 5 3 0 67 0 1 291 9 0 156 4 0 74 1 0 146 0 3 254 0 15 19 0 1 383 1 0 81 5 6 184 0 4 293 1 0 15 0 4 430 8 1 102 1 0 255 0 4 474 13 18 179 6 10 247 0 1 83 chain 6388 chr6 171115067 + 23124091 23124166 L1P2 5180 + 1546 1621 179471 75 chain 82448 chr6 171115067 + 23124189 23125170 L1P2 5180 - 2936 3919 42563 41 0 1 579 0 1 361 chain 9392 chr6 171115067 + 23125208 23125315 U6 107 - 0 107 163598 107 chain 21880 chr6 171115067 + 23149734 23150048 THE1C-int 1605 - 1226 1602 120714 44 0 6 99 0 1 52 10 7 17 0 57 69 10 11 13 chain 3998 chr6 171115067 + 23153053 23153103 MER5A 189 - 123 173 207411 50 chain 38449 chr6 171115067 + 23153332 23153784 L1PA6 6164 + 5685 6159 71517 286 0 21 154 0 1 12 chain 293778 chr6 171115067 + 23156025 23159642 HERVL-int 5654 + 2001 5654 13779 69 0 9 216 0 3 1204 0 4 145 0 6 156 23 22 41 1 2 686 2 0 302 16 20 49 1 7 283 1 0 182 0 1 22 0 1 101 0 1 12 0 4 105 chain 4421 chr6 171115067 + 23159642 23159781 MLT2A1 477 + 0 139 79902 139 chain 41935 chr6 171115067 + 23159787 23160295 MER9a2 513 + 0 513 66707 286 2 3 19 5 9 196 chain 11801 chr6 171115067 + 23160295 23160666 MLT2A1 477 + 139 477 79902 30 4 1 10 1 2 22 0 1 180 4 0 18 49 21 53 chain 264316 chr6 171115067 + 23163946 23168440 HERVK22-int 3844 + 0 3844 15468 43 3 0 114 12 37 112 16 17 248 0 3 292 14 14 88 0 2 5 9 7 764 0 10 581 2 1 256 0 10 7 11 1 112 6 0 323 1 0 71 1 0 7 7 6 11 1 0 36 1 0 20 11 9 30 4 0 10 1 0 43 2 0 16 143 105 22 855 229 81 24 23 78 chain 47422 chr6 171115067 + 23210737 23211320 LTR12_ 688 - 0 688 60884 157 0 103 141 0 1 143 0 1 142 chain 124915 chr6 171115067 + 23225354 23227789 L1PB1 5432 - 8 1775 29373 4 1 0 16 1 0 13 1 0 21 1 0 20 60 54 16 1 0 43 1 0 16 2 1 53 26 20 13 1 0 20 1 0 11 331 0 98 1 0 188 4 7 174 11 8 98 0 4 52 0 1 130 0 6 147 4 5 163 0 1 29 0 1 254 16 1 29 314 0 50 chain 131795 chr6 171115067 + 23227789 23229562 L1PBa1 4058 - 2303 4047 27673 93 1 0 69 0 1 136 2 0 342 19 0 12 0 1 206 2 1 5 0 1 104 2 4 97 1 0 59 10 9 49 20 21 60 0 1 55 2 0 205 3 0 17 3 1 147 18 15 7 1 0 26 chain 205500 chr6 171115067 + 23232960 23235209 L1PA3long 6157 - 0 2251 18827 1863 0 2 386 chain 90778 chr6 171115067 + 23235209 23236215 L1PA3long 6157 + 2905 3911 39367 1006 chain 34823 chr6 171115067 + 23252150 23252591 L1PA8 5853 + 5418 5853 76442 146 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 62 0 1 30 chain 5267 chr6 171115067 + 23253583 23253641 L1PA8 5853 + 5795 5853 192340 58 chain 524582 chr6 171115067 + 23254514 23260647 L1PA5 6144 - 0 6141 4718 339 1 0 1504 0 1 18 0 2 55 3 11 962 0 5 41 0 3 33 1 0 148 0 1 158 15 0 533 6 8 21 0 1 316 0 1 748 1 0 263 0 1 103 0 1 247 0 1 426 1 0 190 chain 8817 chr6 171115067 + 23279388 23279643 MER33 330 - 50 321 166569 25 9 0 7 0 5 45 97 116 11 7 8 54 chain 64899 chr6 171115067 + 23295640 23296528 LTR12 884 + 0 884 50610 91 2 0 134 0 2 28 25 0 36 0 2 23 12 12 27 0 22 332 1 0 27 2 1 23 2 1 123 chain 22783 chr6 171115067 + 23322558 23322882 AluY 311 + 5 311 116659 37 32 15 75 1 0 179 chain 8902 chr6 171115067 + 23355424 23355540 L1PA7 6471 - 4 121 166130 14 2 3 100 chain 537487 chr6 171115067 + 23359231 23365345 L1PA4 6152 - 18 6150 3237 827 0 6 897 1 0 465 0 1 255 0 1 143 0 2 256 1 6 300 0 2 1928 0 2 876 11 25 20 14 0 120 chain 3117 chr6 171115067 + 23373179 23373217 L1MC4 1079 - 450 488 222597 38 chain 21831 chr6 171115067 + 23400173 23400454 L1PB1 5432 - 334 615 120893 29 2 1 5 0 1 245 chain 2503 chr6 171115067 + 23415532 23415694 MER58C 217 - 15 191 233115 22 0 1 4 1 0 6 112 126 17 chain 457369 chr6 171115067 + 23426960 23432877 L1PA8 5853 - 3 5798 8495 90 1 0 7 0 17 30 20 19 8 1 0 71 2 0 44 1 0 43 0 1 131 0 2 39 0 34 230 0 2 72 5 4 796 1 0 301 0 2 380 0 1 412 0 1 176 67 0 758 5 0 149 21 5 472 0 4 403 0 1 198 1 0 4 0 1 245 13 14 4 1 0 175 57 0 195 0 4 142 0 4 51 59 20 6 1 0 11 2 0 16 chain 9111 chr6 171115067 + 23471584 23471682 L1PA2 6032 + 5934 6032 165009 98 chain 18718 chr6 171115067 + 23507964 23508172 L1PA3long 6157 + 5949 6157 130907 208 chain 34761 chr6 171115067 + 23508176 23508559 L1PA3long 6157 + 5774 6157 76523 383 chain 22480 chr6 171115067 + 23536216 23536497 AluY 311 + 4 287 118106 122 1 2 84 1 2 73 chain 23042 chr6 171115067 + 23553800 23554169 THE1D 372 - 10 372 115436 147 50 50 114 9 0 36 0 2 13 chain 34448 chr6 171115067 + 23560832 23561318 MER41C 542 + 25 510 76995 24 0 1 41 17 15 198 2 1 9 4 5 191 chain 4686 chr6 171115067 + 23592692 23592747 MSTB 430 + 359 415 198678 12 0 1 43 chain 33075 chr6 171115067 + 23597349 23597737 L1PA7 6471 - 2 383 79089 9 4 0 149 3 0 223 chain 39103 chr6 171115067 + 23598149 23598621 L1PA5 6144 + 5660 6143 70596 75 1 12 247 0 1 137 2 1 10 chain 23660 chr6 171115067 + 23614222 23614505 L1PA7 6471 + 6101 6396 112251 127 0 2 67 2 12 87 chain 119220 chr6 171115067 + 23665222 23666609 L1PA5 6144 + 4739 6132 31326 567 0 3 83 0 3 409 0 1 183 1 0 144 chain 25176 chr6 171115067 + 23666731 23667049 THE1A 353 + 7 341 103869 56 0 14 33 1 0 122 0 3 106 chain 27531 chr6 171115067 + 23677079 23677376 AluYd8 298 + 0 297 94572 297 chain 30222 chr6 171115067 + 23686002 23686320 AluYb8 318 + 0 318 84125 318 chain 10725 chr6 171115067 + 23693513 23693660 MER30 238 + 80 238 157301 25 4 18 69 3 0 46 chain 147362 chr6 171115067 + 23701121 23702740 L1PA3long 6157 + 4532 6152 24986 1310 0 1 309 chain 3333 chr6 171115067 + 23733381 23733479 L1MA4 2864 - 30 118 218351 17 18 10 26 16 14 21 chain 70031 chr6 171115067 + 23734375 23735167 L1PA5 6144 + 5343 6144 48378 129 2 1 193 0 6 133 0 1 232 0 3 103 chain 26323 chr6 171115067 + 23744391 23744726 L1PA8 5853 - 670 1008 98727 96 2 3 75 0 2 162 chain 48745 chr6 171115067 + 23744726 23745390 L1PA8 5853 + 5194 5853 59915 298 0 1 69 1 0 46 5 3 65 4 3 13 2 0 7 5 7 34 2 1 17 11 10 85 chain 5695 chr6 171115067 + 23748478 23748545 L1PA8 5853 + 5608 5675 188151 67 chain 12194 chr6 171115067 + 23748560 23748727 L1PA8 5853 + 5688 5853 151446 52 2 1 11 9 8 93 chain 23136 chr6 171115067 + 23757478 23757762 L1PA5 6144 - 5 287 114959 145 4 0 17 6 8 112 chain 102199 chr6 171115067 + 23757762 23758943 L1PA5 6144 + 4654 5848 36215 129 0 2 486 0 4 16 0 4 495 0 3 55 chain 308285 chr6 171115067 + 23776881 23780273 L1PA3long 6157 + 2759 6157 13074 796 0 1 1754 0 4 584 0 1 258 chain 68990 chr6 171115067 + 23793807 23794727 L1PA10 4194 + 3216 4143 48814 138 0 6 68 4 6 239 1 0 267 0 4 44 7 6 106 22 19 24 chain 79691 chr6 171115067 + 23798821 23799688 L1PA3long 6157 + 5290 6157 43740 867 chain 532932 chr6 171115067 + 23804277 23810295 L1PA3long 6157 + 0 6152 3860 127 0 4 22 0 1 69 2 1 211 1 2 89 4 0 181 0 7 62 0 128 496 9 0 926 1 0 926 0 4 679 0 1 568 0 4 1428 1 0 216 chain 27678 chr6 171115067 + 23810313 23810690 L1PA7 6471 + 6095 6467 94118 144 7 6 50 12 14 6 2 0 146 4 0 6 chain 68614 chr6 171115067 + 23814404 23815230 L1P1 4361 - 84 913 48975 129 1 0 295 1 2 166 0 4 36 1 0 197 chain 117105 chr6 171115067 + 23816717 23818047 L1PA4 6152 - 0 1340 32089 150 0 7 103 1 0 584 0 4 492 chain 326266 chr6 171115067 + 23818054 23821851 L1PA5 6144 + 2345 6144 12334 184 3 0 126 1 0 587 19 21 418 0 3 1613 0 4 397 2 0 333 1 0 113 chain 9623 chr6 171115067 + 23836094 23836214 MER85 139 + 4 134 162476 85 0 10 35 chain 37137 chr6 171115067 + 23837414 23837871 LTR2 463 + 0 463 73324 127 0 3 24 4 3 197 0 1 61 0 3 44 chain 29663 chr6 171115067 + 23844384 23844694 AluYa5 310 - 0 310 85996 310 chain 85723 chr6 171115067 + 23845908 23847070 L1PA8 5853 - 0 1157 41260 93 1 0 19 2 1 45 21 20 65 2 0 46 1 0 321 0 3 182 0 3 48 0 1 48 15 6 187 12 15 54 chain 72510 chr6 171115067 + 23847070 23847941 L1PA8 5853 + 3801 4681 47224 69 0 1 36 0 2 70 0 3 222 0 4 339 1 0 134 chain 20401 chr6 171115067 + 23893910 23894223 L1P4 1494 + 521 843 125891 81 15 18 62 5 11 83 1 2 8 1 0 57 chain 13194 chr6 171115067 + 23907438 23907640 L1PA10 4194 - 33 224 147490 10 1 0 32 3 0 36 9 1 72 0 1 39 chain 10087 chr6 171115067 + 23907645 23907789 L1PA10 4194 + 782 940 160149 104 1 0 5 1 0 5 3 19 25 chain 5255 chr6 171115067 + 23941505 23941574 MER53 195 + 3 67 192457 27 5 0 37 chain 21074 chr6 171115067 + 23948748 23948973 AluY 311 + 85 311 123642 47 0 1 178 chain 5483 chr6 171115067 + 23949727 23949831 L1MB1 2102 + 1205 1419 190188 13 4 5 4 1 0 25 5 115 52 chain 23572 chr6 171115067 + 23950798 23951087 AluSp 311 - 7 296 112729 289 chain 40003 chr6 171115067 + 23971417 23971924 L1PA10 4194 + 3351 3861 69316 92 8 11 407 chain 7165 chr6 171115067 + 23985271 23985352 L1PA3long 6157 + 6071 6152 176312 81 chain 107446 chr6 171115067 + 23991002 23992219 L1PA4 6152 - 9 1228 34849 4 1 0 200 0 1 217 0 1 115 0 1 680 chain 24943 chr6 171115067 + 23995643 23996254 L1PB1 5432 + 4816 5383 105088 179 12 13 34 7 0 8 1 0 4 68 60 24 2 1 5 1 0 12 2 0 3 2 0 9 2 0 49 27 25 37 2 1 11 79 62 17 1 0 13 chain 27499 chr6 171115067 + 23996898 23997258 THE1B 368 - 0 368 94656 49 5 13 50 0 1 79 5 4 172 chain 14533 chr6 171115067 + 24015459 24015635 L1PA7 6471 - 662 839 142789 105 0 1 71 chain 48103 chr6 171115067 + 24015635 24016209 L1PA7 6471 + 5886 6465 60400 96 0 4 124 1 2 353 chain 3758 chr6 171115067 + 24036199 24036246 L1MA7 2200 + 1621 1668 210977 47 chain 80432 chr6 171115067 + 24046672 24047539 L1PA2 6032 - 2 869 43413 867 chain 59167 chr6 171115067 + 24062660 24063399 L1PA8 5853 - 0 739 53298 92 0 2 18 2 1 50 1 0 8 1 0 64 16 18 36 1 0 450 chain 3441 chr6 171115067 + 24066593 24066636 MLT1D-int 1367 + 19 62 216366 43 chain 151926 chr6 171115067 + 24074900 24077628 L1PB3 3668 - 1220 3589 24346 13 0 3 7 0 5 54 1 0 28 3 0 73 6 5 146 3 0 60 0 1 4 1 0 229 52 37 7 0 14 6 0 2 11 0 1 67 334 0 145 1 9 125 0 4 18 24 25 126 8 5 6 2 0 13 37 5 166 3 4 48 3 1 95 4 0 197 0 2 24 1 0 6 5 9 94 0 1 38 11 12 20 6 7 110 4 5 72 16 18 38 0 1 4 1 0 20 0 1 29 5 7 25 9 6 4 1 0 4 1 0 11 24 17 19 chain 558432 chr6 171115067 + 24083075 24089229 L1PA3long 6157 + 4 6157 462 693 7 0 13 0 7 2310 1 0 240 2 1 2538 0 1 350 chain 47665 chr6 171115067 + 24095810 24096402 L1PA16 3655 - 768 1425 60723 213 1 0 315 0 66 63 chain 45291 chr6 171115067 + 24109787 24110347 MLT2A2 560 - 0 556 62728 52 2 0 47 13 11 446 chain 6931 chr6 171115067 + 24121538 24121624 MER45C 884 - 730 816 177955 86 chain 15685 chr6 171115067 + 24132918 24133125 L1PA8 5853 - 0 209 139314 93 1 0 16 1 0 56 1 0 4 0 5 35 chain 40887 chr6 171115067 + 24142919 24143439 LTR12 884 - 250 884 68044 96 0 2 136 0 22 103 1 0 46 0 91 138 chain 14225 chr6 171115067 + 24176764 24177169 L1MA8 2339 - 15 375 143808 25 133 110 29 12 9 28 21 6 17 2 0 22 1 0 69 1 0 45 chain 13960 chr6 171115067 + 24190602 24190761 L1PA5 6144 + 5980 6138 144704 17 1 0 141 chain 521990 chr6 171115067 + 24198439 24204856 L1PA7 6471 + 6 6459 4964 161 6 4 205 1 0 153 1 0 512 1 0 312 2 3 413 0 4 361 0 2 125 1 0 82 0 1 45 0 9 112 0 1 127 9 0 114 0 4 186 1 3 266 0 1 337 0 4 19 0 9 25 0 1 6 1 0 148 3 6 46 14 16 174 1 4 474 0 4 8 6 0 919 2 0 155 0 2 53 2 0 259 0 1 515 0 8 54 chain 29541 chr6 171115067 + 24290210 24290520 AluYa5 310 - 0 310 86455 310 chain 28903 chr6 171115067 + 24291705 24292012 AluYa5 310 - 3 310 89446 307 chain 169783 chr6 171115067 + 24293714 24296471 L1PREC2 3366 + 519 2963 22076 90 0 3 139 0 3 265 0 3 92 292 0 49 0 3 5 3 0 120 0 2 6 3 0 11 1 0 144 0 2 94 9 8 87 3 7 118 0 1 16 6 0 280 0 5 138 17 14 50 1 0 162 24 28 19 4 1 100 14 12 42 2 0 114 2 0 54 2 1 43 8 4 14 77 61 22 4 1 11 chain 22135 chr6 171115067 + 24299219 24299612 L1PA16 3655 + 3246 3619 119649 44 18 16 39 1 0 64 2 3 120 1 0 26 31 26 11 7 0 8 5 0 16 chain 57687 chr6 171115067 + 24322449 24323196 MER4E 760 + 7 752 54142 16 0 1 127 22 25 76 1 2 31 9 2 82 0 2 63 1 0 142 1 0 176 chain 89218 chr6 171115067 + 24371842 24373146 L1PA4 6152 + 5130 6143 39922 180 0 2 166 0 4 177 297 0 484 chain 103623 chr6 171115067 + 24379212 24380419 L1PA6 6164 + 4942 6156 35822 206 1 8 159 1 0 186 0 1 654 chain 53261 chr6 171115067 + 24384550 24385210 L1PA7 6471 - 2 659 56851 8 5 0 135 12 14 500 chain 87019 chr6 171115067 + 24400274 24401247 LTR5_Hs 974 - 0 974 40773 791 0 1 182 chain 56443 chr6 171115067 + 24414374 24415002 SVA_B 1603 - 0 707 54882 6 3 0 586 1 83 32 chain 36539 chr6 171115067 + 24443300 24443801 LTR3B_ 500 - 0 500 74185 149 7 9 39 8 5 135 6 7 80 1 0 3 1 0 41 0 1 31 chain 7304 chr6 171115067 + 24468003 24468090 MER4A 717 + 4 91 175414 87 chain 63391 chr6 171115067 + 24469340 24470016 L1PA2 6032 + 5353 6029 51282 676 chain 44037 chr6 171115067 + 24497216 24497854 LTR12F 595 - 0 595 64161 205 9 0 10 1 0 165 14 5 19 7 14 31 7 5 37 6 1 19 24 0 84 chain 3923 chr6 171115067 + 24500433 24500492 L1MB3 1562 - 7 65 208518 32 2 1 25 chain 8530 chr6 171115067 + 24500611 24500729 L1MB3 1562 + 1301 1417 168129 49 2 1 15 1 0 51 chain 314665 chr6 171115067 + 24508036 24512444 L1PB1 5432 - 12 5355 12822 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 29 15 2 15 1 0 45 1 0 15 2 1 50 349 14 9 1 0 9 1 0 24 27 20 434 0 1 349 0 1 79 0 1279 109 1 0 18 1 0 5 1 2 10 0 19 208 0 14 16 0 4 51 1 0 496 9 11 574 26 15 303 0 3 351 0 1 170 1 0 5 0 1 19 9 0 290 1 2 177 chain 5409 chr6 171115067 + 24560359 24560737 L1MB7 1623 - 204 544 190898 17 3 5 22 283 243 53 chain 11627 chr6 171115067 + 24586333 24586466 MER4A 717 + 584 717 153786 133 chain 4539 chr6 171115067 + 24611218 24611296 L1MB8 1703 + 1475 1546 200338 29 16 9 33 chain 4391 chr6 171115067 + 24623945 24624004 L1MA4 2864 + 2747 2804 202061 20 2 0 37 chain 24666 chr6 171115067 + 24629467 24629759 AluY 311 + 6 299 106631 126 0 1 166 chain 21003 chr6 171115067 + 24668748 24669269 MER51A 677 - 89 676 123902 36 57 84 40 20 192 37 10 0 7 56 0 16 68 0 77 0 1 97 chain 156129 chr6 171115067 + 24669799 24672581 MER4-int 2692 - 18 2117 23843 27 1 0 36 0 1 115 0 3 174 0 2 28 5 8 5 1 0 93 0 1 49 0 2 129 2 0 49 2 0 6 0 1 56 0 4 7 3 0 93 5 9 21 0 1 285 5 6 31 0 1 25 0 16 129 747 39 99 5 0 21 1 0 310 1 0 161 0 1 55 chain 57127 chr6 171115067 + 24671181 24671848 L1PA6 6164 + 5496 6161 54446 658 2 0 7 chain 171904 chr6 171115067 + 24674961 24676907 L1PA5 6144 - 0 1957 21828 572 1 3 503 0 6 166 0 1 190 2 0 352 0 4 160 chain 344464 chr6 171115067 + 24676915 24680924 HERV17-int 4347 - 296 4335 11774 103 10 15 105 1 2 282 10 9 537 0 4 765 0 2 284 0 24 526 0 2 245 0 3 167 1 0 301 3 5 22 1 0 353 5 0 156 1 0 27 2 0 34 1 0 51 1 0 15 chain 65076 chr6 171115067 + 24682520 24683328 LTR17 781 - 0 781 50539 12 0 1 355 29 1 85 0 1 17 10 0 181 0 9 119 chain 4923 chr6 171115067 + 24683428 24683483 MER4A1 472 - 0 55 196011 55 chain 8682 chr6 171115067 + 24686565 24686702 MSTB 430 - 14 161 167292 54 10 9 37 1 12 35 chain 5033 chr6 171115067 + 24687391 24687522 L1MB3 1562 - 98 203 194792 20 51 24 29 1 2 30 chain 24726 chr6 171115067 + 24710494 24710791 AluSp 311 - 13 311 106289 136 0 1 161 chain 121892 chr6 171115067 + 24731219 24732791 THE1B-int 1605 + 0 1596 30417 430 0 25 259 2 0 5 10 12 363 10 12 144 10 6 282 0 1 57 chain 21168 chr6 171115067 + 24754676 24755020 THE1B 368 - 0 368 123317 125 35 45 21 13 12 95 11 26 44 chain 16597 chr6 171115067 + 24758159 24758373 MER4E1 777 - 0 210 136682 85 5 1 124 chain 116095 chr6 171115067 + 24765339 24766727 LTR12C 1709 - 0 1709 32418 481 0 4 77 0 1 29 9 325 478 1 0 4 0 1 309 chain 4505 chr6 171115067 + 24795198 24795288 LTR8 732 + 595 683 200722 30 25 23 35 chain 567677 chr6 171115067 + 24811906 24817934 L1HS 6032 - 0 6031 51 665 0 3 5363 chain 3640 chr6 171115067 + 24821009 24821054 L1MB7 1623 - 194 238 212958 7 1 0 37 chain 43319 chr6 171115067 + 24877864 24878428 LTR10A 586 - 16 586 65012 142 7 10 135 1 2 60 0 1 8 9 10 202 chain 2470 chr6 171115067 + 24927118 24927163 HAL1-2a_MD 234 + 92 146 233486 5 3 0 22 1 13 14 chain 53730 chr6 171115067 + 24942637 24943234 L1PA4 6152 - 496 1093 56516 597 chain 41799 chr6 171115067 + 24943235 24943724 L1PA4 6152 + 5657 6146 66899 489 chain 31033 chr6 171115067 + 24973390 24974160 L1PA16 3655 + 3106 3577 82464 73 7 8 11 10 15 40 315 13 24 3 1 118 2 1 167 chain 23951 chr6 171115067 + 24982976 24983415 LTR23 429 + 0 427 110616 91 69 60 129 1 0 35 18 19 20 14 11 62 chain 14838 chr6 171115067 + 24984411 24984639 LTR7B 505 - 7 242 141815 44 14 13 54 0 1 24 1 0 13 10 15 15 0 1 38 0 2 15 chain 3911 chr6 171115067 + 24986475 24986558 MIR 256 - 144 250 208682 38 26 49 19 chain 14290 chr6 171115067 + 24987044 24987236 MER30 238 - 0 203 143590 39 3 0 75 4 18 71 chain 31951 chr6 171115067 + 24992578 24993088 L1PREC2 3366 + 2350 2859 80940 71 3 0 5 0 3 20 0 1 4 3 2 124 23 28 122 11 12 10 2 0 47 8 7 44 1 0 4 3 0 5 chain 24952 chr6 171115067 + 24993443 24993801 L1PREC2 3366 - 2771 3121 105048 127 1 0 8 5 4 44 9 6 114 2 1 33 3 1 12 chain 24964 chr6 171115067 + 25001581 25001874 AluSx3 311 + 11 304 104990 293 chain 18310 chr6 171115067 + 25021613 25022003 L1PB1 5432 + 5062 5422 132048 41 13 11 24 1 0 7 2 1 12 4 0 9 2 0 53 2 1 15 1 0 38 37 23 30 2 0 4 1 0 12 7 5 8 0 4 10 1 0 21 1 0 9 6 5 17 chain 35485 chr6 171115067 + 25052730 25053337 MER4B 649 - 8 649 75578 8 1 0 46 13 14 11 1 0 84 1 0 7 56 51 22 27 37 30 1 0 69 0 9 30 2 25 198 chain 88273 chr6 171115067 + 25074113 25075229 L1PA6 6164 - 4 1192 40271 49 2 20 30 0 32 423 3 22 262 0 4 288 6 5 53 chain 4152 chr6 171115067 + 25103127 25103196 L1ME1 1623 - 1043 1110 205214 15 7 5 47 chain 26583 chr6 171115067 + 25126499 25126781 AluYk11 308 + 25 307 97716 282 chain 4094 chr6 171115067 + 25129027 25129105 MER53 195 - 100 175 206022 20 17 14 41 chain 35402 chr6 171115067 + 25129160 25129611 MER4A1 472 + 0 472 75674 15 0 2 26 1 0 6 0 1 69 2 0 124 1 22 207 chain 198961 chr6 171115067 + 25133642 25136301 MER4-int 2692 + 1 2692 19279 10 1 0 25 2 0 12 2 3 38 0 1 24 1 0 4 3 1 275 9 10 82 7 9 59 1 2 76 0 5 22 2 0 62 3 0 11 0 5 151 3 0 4 3 0 26 0 1 210 7 23 62 6 7 30 1 0 165 2 1 25 2 7 22 0 6 19 1 0 51 6 4 202 1 0 27 1 0 198 0 1 303 1 0 212 0 11 187 chain 30374 chr6 171115067 + 25136323 25136725 MER4A1 472 + 22 456 83730 7 1 0 17 0 1 6 2 1 117 1 0 54 4 38 193 chain 49023 chr6 171115067 + 25157739 25158415 MER11A 1151 + 6 774 59732 33 19 118 21 8 0 50 1 0 66 4 0 38 0 2 109 0 1 94 0 1 144 2 4 87 chain 539033 chr6 171115067 + 25158425 25164537 L1PA5 6144 + 3 6128 2986 511 0 3 468 0 3 319 0 1 332 1 0 1366 0 1 675 3 0 663 0 4 926 0 4 248 0 1 281 2 3 73 1 0 96 1 6 8 5 0 133 chain 5096 chr6 171115067 + 25194871 25194966 L1PB1 5432 - 11 101 194121 17 1 0 6 11 10 18 1 0 24 2 0 15 chain 457792 chr6 171115067 + 25207878 25213590 L1PA8 5853 + 109 5853 8478 124 0 1 15 1 2 51 18 6 291 0 4 30 7 1 149 0 3 93 0 3 114 1 0 149 5 0 46 1 0 197 0 1 156 1 6 111 0 11 225 0 1 122 7 6 346 0 5 103 0 4 276 0 1 146 7 0 60 1 4 82 7 0 149 5 9 261 0 1 112 0 1 100 0 2 68 0 1 274 0 6 330 0 2 555 1 0 6 0 2 28 0 12 12 0 9 16 2 0 76 4 3 475 1 0 44 2 0 71 2 1 7 2 1 56 1 0 16 1 0 93 chain 13187 chr6 171115067 + 25262758 25263069 L1MA5A 2387 + 2100 2354 147519 7 1 0 50 2 0 30 9 0 26 59 17 19 0 2 45 1 0 7 11 14 13 7 1 9 2 1 13 chain 23999 chr6 171115067 + 25298983 25299273 AluSp 311 - 13 305 110335 203 0 2 87 chain 4645 chr6 171115067 + 25348191 25348245 MER6 865 - 0 54 199116 54 chain 28748 chr6 171115067 + 25356275 25356584 AluYb8 318 - 9 318 90132 309 chain 38937 chr6 171115067 + 25382573 25383078 LTR12 884 - 11 867 70820 57 3 239 132 2 1 57 0 113 36 0 4 210 1 0 7 chain 73347 chr6 171115067 + 25421448 25422258 L1PA3long 6157 + 5343 6157 46863 479 1 5 188 1 0 29 0 1 112 chain 10245 chr6 171115067 + 25431245 25431360 L1PA3long 6157 - 0 115 159400 115 chain 63880 chr6 171115067 + 25444605 25445352 L1PA6 6164 - 2 748 51064 9 2 0 142 0 1 594 chain 22711 chr6 171115067 + 25502507 25502794 AluSg7 307 + 0 295 117029 13 4 7 83 0 2 26 0 1 132 0 2 29 chain 24695 chr6 171115067 + 25521719 25522018 AluY 311 + 4 303 106462 128 0 1 104 3 2 64 chain 11814 chr6 171115067 + 25529884 25530012 AluYb8 318 + 190 318 152967 128 chain 14047 chr6 171115067 + 25539724 25539880 AluSp 311 + 153 309 144387 156 chain 126990 chr6 171115067 + 25585775 25587246 SVA_B 1603 - 0 1603 28817 535 0 37 12 0 40 43 3 84 805 35 5 19 3 7 16 chain 7442 chr6 171115067 + 25594915 25595024 MER5A 189 + 47 155 174501 29 8 7 72 chain 9422 chr6 171115067 + 25609125 25609352 MER30 238 - 0 238 163443 58 67 85 65 20 13 17 chain 85538 chr6 171115067 + 25748710 25749706 LTR5B 1012 - 0 1012 41327 523 1 0 158 0 1 161 0 2 30 0 14 123 chain 2857 chr6 171115067 + 25802349 25802380 ORSL 269 - 66 97 227697 31 chain 121963 chr6 171115067 + 25805046 25807688 L1PB3 3668 + 136 3590 30395 59 11 10 152 0 2 99 0 1 17 28 8 95 0 4 50 1 25 141 2 0 134 7 15 25 2 0 17 4 3 211 3 0 6 701 1541 196 0 1 40 2 0 15 1 2 50 2 0 141 0 6 11 17 11 5 1 0 61 2 1 68 28 20 12 1 0 85 80 60 30 7 3 13 1 0 8 chain 40426 chr6 171115067 + 25807709 25808473 L1PB1 5432 - 10 734 68696 4 1 0 14 1 0 10 8 7 10 6 5 26 2 0 6 96 82 19 4 2 18 1 0 26 11 4 20 2 0 10 5 1 14 8 6 25 1 0 8 4 2 169 0 1 123 1 0 4 1 2 106 chain 16034 chr6 171115067 + 25836521 25836767 LTR46-int 301 - 2 239 138268 23 26 18 108 1 0 88 chain 40609 chr6 171115067 + 25847988 25848719 L1PB1 5432 - 5 744 68423 5 2 0 18 1 0 13 1 0 19 6 5 21 24 19 30 14 1 15 9 8 37 2 1 10 6 5 53 2 0 6 7 3 10 2 1 13 1 0 20 1 0 8 6 3 125 0 1 116 5 28 14 3 25 106 chain 37902 chr6 171115067 + 25848723 25849189 L1PB1 5432 + 4212 4683 72284 243 0 4 52 0 4 113 3 0 55 chain 55416 chr6 171115067 + 25871249 25871867 L1PA4 6152 + 5523 6143 55454 478 1 3 139 chain 4237 chr6 171115067 + 25881802 25881851 MADE1 96 - 0 49 204060 49 chain 25789 chr6 171115067 + 25893748 25894056 AluSp 311 - 1 306 100915 8 3 0 297 chain 27151 chr6 171115067 + 25897999 25898305 AluYa5 310 + 0 310 95756 14 0 2 130 1 0 56 0 1 8 0 1 6 0 1 91 chain 27178 chr6 171115067 + 25919653 25919955 AluYk4 311 + 0 309 95673 93 0 7 209 chain 4062 chr6 171115067 + 25923008 25923077 LTR37A 408 - 68 136 206465 29 9 8 31 chain 11078 chr6 171115067 + 25945819 25945948 L1MA5 2750 - 425 554 155899 129 chain 27811 chr6 171115067 + 25945953 25946320 THE1B 368 + 2 368 93658 104 1 2 64 2 1 155 7 6 34 chain 27789 chr6 171115067 + 25955911 25956343 MER41A 554 + 173 554 93737 42 54 1 253 10 16 50 4 0 19 chain 4630 chr6 171115067 + 25960777 25960836 MER41B 635 - 84 152 199305 17 0 9 42 chain 37995 chr6 171115067 + 25982227 25982803 LTR14B 630 + 41 630 72139 122 1 0 109 24 59 60 64 43 196 chain 9868 chr6 171115067 + 25997409 25997673 L1MA5A 2387 - 93 317 161246 38 46 24 13 10 7 32 19 7 16 2 0 38 15 14 35 chain 48656 chr6 171115067 + 25999458 26000000 LTR5_Hs 974 + 0 544 59989 121 0 2 421 chain 3097 chr6 171115067 + 26010564 26010632 MER77 626 + 381 456 222972 22 19 26 27 chain 5363 chr6 171115067 + 26070952 26071041 MLT1A 405 - 313 402 191399 64 13 13 12 chain 30289 chr6 171115067 + 26075267 26075635 LTR2 463 + 0 373 83961 127 0 3 124 0 1 104 0 1 13 chain 415023 chr6 171115067 + 26076446 26081539 Harlequin-int 5206 + 127 5206 9667 5 0 3 9 9 0 22 1 0 120 0 4 7 14 10 47 4 1 207 0 1 105 1 0 10 1 0 124 0 3 920 0 1 892 9 17 11 7 27 8 20 0 97 4 12 227 0 7 28 0 2 855 1 0 107 4 0 503 30 3 684 chain 35647 chr6 171115067 + 26081539 26081988 LTR2 463 + 0 463 75342 127 0 3 93 0 10 36 1 2 192 chain 22140 chr6 171115067 + 26105224 26105497 AluSg7 307 + 2 278 119621 111 0 2 16 0 1 146 chain 4050 chr6 171115067 + 26115481 26115615 MIR 256 - 32 161 206637 30 71 66 33 chain 7129 chr6 171115067 + 26131976 26132076 MLT1B-int 1170 - 583 677 176554 70 6 0 24 chain 3030 chr6 171115067 + 26171876 26171910 MER5A 189 - 139 173 224370 34 chain 37235 chr6 171115067 + 26178053 26178530 LTR2B 499 + 5 499 73193 7 0 1 61 3 0 37 3 22 175 0 1 10 1 0 180 chain 16952 chr6 171115067 + 26268665 26268884 LTR8 732 + 46 274 135723 111 7 13 31 0 3 70 chain 6939 chr6 171115067 + 26286753 26286825 tRNA-Met-i 72 + 0 72 177899 72 chain 6885 chr6 171115067 + 26299904 26299976 tRNA-Arg-CGA 73 + 0 72 178320 72 chain 7212 chr6 171115067 + 26305717 26305792 tRNA-Ser-AGY 82 - 0 75 175990 75 chain 5318 chr6 171115067 + 26311425 26311495 tRNA-Gln-CAA 69 - 0 69 191845 13 2 1 55 chain 5318 chr6 171115067 + 26311976 26312046 tRNA-Gln-CAA 69 - 0 69 191844 13 2 1 55 chain 7763 chr6 171115067 + 26312823 26312905 tRNA-Ser-TCA_ 82 - 0 82 172526 82 chain 6939 chr6 171115067 + 26313351 26313423 tRNA-Met-i 72 - 0 72 177905 72 chain 15174 chr6 171115067 + 26316040 26316732 PABL_B 668 - 11 668 140844 66 0 331 11 457 98 51 13 6 94 chain 6930 chr6 171115067 + 26319329 26319401 tRNA-Trp-TGG 72 - 0 72 177966 72 chain 23944 chr6 171115067 + 26320274 26320549 AluSp 311 + 36 311 110652 275 chain 6763 chr6 171115067 + 26323045 26323117 tRNA-Arg-CGA 73 + 0 72 179229 72 chain 7894 chr6 171115067 + 26327816 26327898 tRNA-Ser-TCY 82 + 0 82 171700 82 chain 4702 chr6 171115067 + 26328367 26328416 tRNA-Arg-CGY_ 50 + 0 49 198512 49 chain 6939 chr6 171115067 + 26330528 26330600 tRNA-Met-i 72 - 0 72 177904 72 chain 6930 chr6 171115067 + 26331671 26331743 tRNA-Trp-TGG 72 - 0 72 177965 72 chain 85376 chr6 171115067 + 26433529 26434588 MER11B 1079 + 0 1079 41389 316 1 18 432 5 8 212 1 2 60 8 7 24 chain 22704 chr6 171115067 + 26483758 26484044 AluSp 311 + 11 296 117056 21 2 1 263 chain 26236 chr6 171115067 + 26490092 26490465 LTR7B 505 + 0 490 99071 107 1 11 53 18 86 32 1 0 22 0 41 89 14 13 36 chain 3958 chr6 171115067 + 26510922 26510968 MSTA 426 - 26 72 208004 46 chain 8030 chr6 171115067 + 26521435 26521518 tRNA-Leu-CTG 83 + 0 83 170875 83 chain 7121 chr6 171115067 + 26533144 26533218 tRNA-Thr-ACY_ 74 - 0 74 176619 74 chain 4702 chr6 171115067 + 26537725 26537774 tRNA-Arg-CGY_ 50 + 0 49 198511 49 chain 6881 chr6 171115067 + 26538281 26538354 tRNA-Val-GTG 73 + 0 73 178347 73 chain 35814 chr6 171115067 + 26550102 26550603 MER41C 542 - 13 542 75112 142 14 17 26 11 33 53 1 5 187 2 0 16 0 1 49 chain 6808 chr6 171115067 + 26553730 26553802 tRNA-Ala-GCG 72 + 0 72 178893 72 chain 3729 chr6 171115067 + 26554349 26554388 tRNA-Ile-ATT 40 + 0 39 211494 39 chain 6948 chr6 171115067 + 26555497 26555569 tRNA-Pro-CCY 72 + 0 72 177840 72 chain 4120 chr6 171115067 + 26556773 26556816 tRNA-Lys-AAG 49 + 0 43 205655 43 chain 3425 chr6 171115067 + 26569085 26569122 tRNA-Tyr-TAC 38 + 0 37 216673 37 chain 6659 chr6 171115067 + 26572091 26572164 tRNA-Ala-GCY 73 - 0 73 180015 73 chain 9845 chr6 171115067 + 26574811 26574944 MLT1A 405 + 246 377 161363 91 1 0 16 1 0 24 chain 3425 chr6 171115067 + 26577331 26577368 tRNA-Tyr-TAC 38 + 0 37 216672 37 chain 5167 chr6 171115067 + 26581285 26581343 L1PA16 3655 - 1875 1933 193383 58 chain 3029 chr6 171115067 + 26588182 26588220 MADE1 96 + 56 95 224391 13 0 1 25 chain 10042 chr6 171115067 + 26594279 26594409 MER65A 464 + 328 464 160373 30 0 2 81 0 4 19 chain 3556 chr6 171115067 + 26595101 26595138 tRNA-Tyr-TAC 38 + 0 37 214431 37 chain 4073 chr6 171115067 + 26603287 26603337 tRNA-Asn-AAC 74 - 23 73 206291 50 chain 29359 chr6 171115067 + 26625480 26625794 AluYb8 318 - 3 318 87249 31 0 1 283 chain 8509 chr6 171115067 + 26626324 26626442 L1MC2 1988 - 1233 1350 168251 54 2 1 62 chain 10578 chr6 171115067 + 26632393 26632535 MER4E1 777 + 0 144 157923 14 3 5 125 chain 21395 chr6 171115067 + 26669957 26670303 MLT2A2 560 + 201 560 122527 5 0 2 198 71 82 72 chain 6519 chr6 171115067 + 26673589 26673662 tRNA-Ala-GCY 73 + 0 73 181097 73 chain 6650 chr6 171115067 + 26682714 26682787 tRNA-Ala-GCY 73 + 0 73 180095 73 chain 6528 chr6 171115067 + 26687484 26687557 tRNA-Ala-GCY 73 + 0 73 181031 73 chain 5193 chr6 171115067 + 26701711 26701766 tRNA-Met 55 + 0 55 193119 55 chain 6528 chr6 171115067 + 26705605 26705678 tRNA-Ala-GCY 73 + 0 73 181030 73 chain 6424 chr6 171115067 + 26730736 26730809 tRNA-Ala-GCY 73 + 0 73 181834 73 chain 5193 chr6 171115067 + 26735591 26735646 tRNA-Met 55 - 0 55 193121 55 chain 37495 chr6 171115067 + 26738764 26739310 LTR66 600 + 69 600 72816 12 0 1 318 59 27 11 0 17 19 1 0 126 chain 115907 chr6 171115067 + 26743921 26745175 L1PA2 6032 - 0 1254 32494 1254 chain 3729 chr6 171115067 + 26745289 26745328 tRNA-Ile-ATT 40 - 1 40 211499 39 chain 5821 chr6 171115067 + 26752629 26752703 tRNA-Ala-GCY 73 + 0 73 186941 36 1 0 37 chain 73813 chr6 171115067 + 26756266 26757210 LTR5_Hs 974 - 16 974 46607 54 1 7 66 13 14 34 7 7 119 0 1 193 1 5 251 0 1 146 0 1 59 chain 5193 chr6 171115067 + 26758567 26758622 tRNA-Met 55 - 0 55 193120 55 chain 14247 chr6 171115067 + 26762376 26762550 LTR66 600 - 0 173 143733 127 1 0 46 chain 5193 chr6 171115067 + 26766443 26766498 tRNA-Met 55 + 0 55 193118 55 chain 6424 chr6 171115067 + 26771289 26771362 tRNA-Ala-GCY 73 - 0 73 181835 73 chain 3607 chr6 171115067 + 26780831 26780870 tRNA-Ile-ATT 40 + 0 39 213534 39 chain 5724 chr6 171115067 + 26788155 26788221 tRNA-Ala-GCY 73 - 0 66 187895 66 chain 6650 chr6 171115067 + 26796005 26796078 tRNA-Ala-GCY 73 - 0 73 180097 73 chain 23509 chr6 171115067 + 26801441 26801800 THE1C 375 + 0 363 113080 51 19 21 36 1 0 16 0 20 10 17 1 195 1 0 13 chain 5846 chr6 171115067 + 26804831 26804899 L1MA7 2200 + 1871 1939 186718 68 chain 10772 chr6 171115067 + 26807019 26807238 L1MA5A 2387 + 2107 2295 157102 48 2 0 26 2 0 34 3 0 12 34 7 33 4 7 21 chain 46251 chr6 171115067 + 26808774 26809281 L1PA2 6032 + 5528 6032 61812 498 3 0 6 chain 81346 chr6 171115067 + 26810631 26811586 L1PA6 6164 - 1694 2653 43026 104 0 4 156 0 1 220 1 0 79 0 2 208 0 1 4 4 1 179 chain 125017 chr6 171115067 + 26811591 26813154 L1PA6 6164 + 4616 6162 29387 97 23 1 486 9 8 100 1 0 270 0 1 221 1 5 125 0 2 70 1 2 91 1 0 67 chain 76175 chr6 171115067 + 26829074 26829910 L1PA2 6032 - 2 838 45380 152 0 5 7 5 0 672 chain 27393 chr6 171115067 + 26846774 26847075 L1PA2 6032 + 5729 6030 94993 301 chain 103550 chr6 171115067 + 26861392 26862937 THE1B-int 1605 + 1 1599 35852 217 3 0 30 114 60 83 5 69 76 9 16 109 15 16 17 7 13 120 13 14 307 0 14 80 0 6 58 0 5 88 6 7 113 2 0 5 0 7 68 chain 8940 chr6 171115067 + 26862944 26863103 THE1B 368 + 2 169 165924 47 0 6 13 17 18 19 11 12 52 chain 4435 chr6 171115067 + 26871029 26871103 MER3 215 + 8 83 201514 14 9 10 51 chain 37730 chr6 171115067 + 26885967 26886388 L1PA3long 6157 - 11 432 72517 421 chain 106306 chr6 171115067 + 26886388 26887547 L1PA3long 6157 + 4567 5726 35183 1159 chain 66254 chr6 171115067 + 26897636 26898370 L1PA3long 6157 - 0 731 49979 148 3 0 583 chain 118759 chr6 171115067 + 26898371 26899682 L1PA3long 6157 + 4097 5408 31512 1311 chain 202633 chr6 171115067 + 26906576 26908940 L1PA6 6164 - 15 2410 19016 400 0 22 745 0 1 44 0 9 257 1 0 917 chain 3322 chr6 171115067 + 26908947 26908990 Tigger5 388 + 300 343 218540 43 chain 111208 chr6 171115067 + 26950332 26951828 L1PA8A 6298 + 4780 6292 33885 144 1 5 90 0 1 35 0 9 13 0 1 21 5 7 163 3 0 58 0 1 39 18 1 121 2 1 86 1 2 104 0 4 156 0 1 337 6 5 71 3 17 19 chain 28394 chr6 171115067 + 26954972 26955550 L1PB1 5432 + 4922 5404 91606 32 1 4 115 4 0 6 91 29 6 3 0 24 1 0 9 1 0 11 5 1 8 2 0 53 2 1 15 1 0 45 1 0 15 24 12 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 24724 chr6 171115067 + 26959077 26959505 L1PA15 4387 - 73 489 106301 44 6 3 50 1 0 10 4 0 22 1 0 22 44 43 15 6 5 168 1 0 34 chain 524174 chr6 171115067 + 26976180 26982341 L1PA6 6164 + 0 6159 4751 195 0 1 37 16 0 277 1 0 281 1 1 39 3 0 592 8 13 887 2 3 229 0 1 166 0 1 231 0 1 16 1 0 213 0 1 6 1 0 718 1 6 450 0 4 346 1 0 600 4 0 196 0 1 151 0 3 350 1 2 141 chain 3656 chr6 171115067 + 26988124 26988162 tRNA-Ile-ATA 38 + 0 38 212665 38 chain 7124 chr6 171115067 + 26998453 26998545 MLT1B 390 - 280 368 176585 22 4 0 66 chain 50825 chr6 171115067 + 27003926 27004519 L1PA7 6471 - 1 595 58418 175 0 1 418 chain 12119 chr6 171115067 + 27013501 27013748 LTR12C 1709 + 672 828 151746 30 41 0 92 50 0 34 chain 48451 chr6 171115067 + 27015284 27015838 LTR6B 557 - 0 557 60147 202 0 1 307 1 0 15 0 3 29 chain 36478 chr6 171115067 + 27020095 27020570 LTR2B 499 - 0 490 74267 182 1 0 6 7 8 174 0 19 36 3 0 60 1 0 5 chain 6826 chr6 171115067 + 27059520 27059592 tRNA-Pro-CCG 72 + 0 72 178752 72 chain 17441 chr6 171115067 + 27062865 27063077 AluY 311 + 95 301 134398 38 1 0 148 6 1 19 chain 7772 chr6 171115067 + 27065084 27065166 tRNA-Ser-AGY 82 + 0 82 172472 82 chain 6496 chr6 171115067 + 27125907 27125977 tRNA-His-CAY_ 70 + 0 70 181288 70 chain 6408 chr6 171115067 + 27130055 27130123 tRNA-Thr-ACY_ 74 + 6 74 181963 68 chain 3729 chr6 171115067 + 27145028 27145067 tRNA-Ile-ATT 40 - 1 40 211498 39 chain 43234 chr6 171115067 + 27155322 27155849 LTR14 556 + 30 556 65132 435 1 0 91 chain 25430 chr6 171115067 + 27158595 27158901 AluYc 301 + 0 296 102542 114 0 2 172 12 0 8 chain 43113 chr6 171115067 + 27163500 27164058 LTR14 556 + 0 556 65274 465 1 0 36 21 20 35 chain 34209 chr6 171115067 + 27167328 27168102 MER4A1 472 - 1 472 77338 224 0 19 33 331 0 135 0 7 36 0 2 15 chain 4226 chr6 171115067 + 27172704 27172757 MLT2D 439 - 0 52 204219 48 1 0 4 chain 26306 chr6 171115067 + 27172804 27173260 MER31A 484 + 0 458 98808 82 0 1 34 13 30 11 17 0 101 0 1 43 1 0 6 7 4 57 44 48 40 chain 6414 chr6 171115067 + 27173866 27173939 tRNA-Val-GTG 73 - 0 73 181924 73 chain 23826 chr6 171115067 + 27176423 27176722 AluY 311 + 0 300 111326 112 0 3 12 11 0 16 0 3 121 0 6 27 chain 7472 chr6 171115067 + 27177627 27177707 tRNA-Ser-TCG 80 + 0 80 174334 80 chain 23814 chr6 171115067 + 27180962 27181257 AluSp 311 + 4 298 111397 140 1 0 154 chain 4702 chr6 171115067 + 27181646 27181695 tRNA-Arg-CGY_ 50 - 1 50 198517 49 chain 4702 chr6 171115067 + 27182951 27183000 tRNA-Arg-CGY_ 50 + 0 49 198510 49 chain 11509 chr6 171115067 + 27194330 27194495 MER2 342 - 26 210 154253 16 6 7 38 0 18 105 chain 29872 chr6 171115067 + 27200713 27201032 AluYb9 318 + 0 318 85200 200 1 0 118 chain 4453 chr6 171115067 + 27203287 27203336 tRNA-Val-GTY 66 + 0 49 201315 49 chain 25663 chr6 171115067 + 27203860 27204150 AluSp 311 - 20 311 101438 158 0 1 132 chain 3729 chr6 171115067 + 27205384 27205423 tRNA-Ile-ATT 40 - 1 40 211497 39 chain 5176 chr6 171115067 + 27221327 27221414 MER53 195 - 0 87 193279 57 3 6 7 3 0 17 chain 3467 chr6 171115067 + 27241738 27241777 tRNA-Ile-ATT 40 + 0 39 215865 39 chain 3598 chr6 171115067 + 27243024 27243063 tRNA-Ile-ATT 40 - 1 40 213695 39 chain 6217 chr6 171115067 + 27248055 27248121 tRNA-Val-GTG 73 - 7 73 183441 66 chain 24696 chr6 171115067 + 27251506 27251797 AluSp 311 + 0 292 106457 81 1 0 26 0 2 183 chain 35951 chr6 171115067 + 27252890 27253363 LTR2B 499 + 9 499 74956 5 1 0 57 2 1 39 0 19 176 0 1 10 1 0 182 chain 3140 chr6 171115067 + 27261670 27261705 tRNA-Ile-ATT 40 + 0 35 222192 35 chain 3775 chr6 171115067 + 27263211 27263254 tRNA-Gln-CAG 43 + 0 43 210754 43 chain 7641 chr6 171115067 + 27265774 27265856 tRNA-Ser-AGY 82 + 0 82 173279 82 chain 7009 chr6 171115067 + 27270789 27270947 MER2 342 + 6 172 177402 26 1 0 14 42 49 13 2 4 60 chain 5863 chr6 171115067 + 27270956 27271022 MER1B 344 - 0 66 186557 66 chain 5024 chr6 171115067 + 27294482 27294542 MER49 923 + 144 204 194884 60 chain 6939 chr6 171115067 + 27300763 27300835 tRNA-Met-i 72 - 0 72 177903 72 chain 6190 chr6 171115067 + 27302775 27302841 tRNA-Lys-AAA 73 - 7 73 183655 66 chain 34497 chr6 171115067 + 27346041 27346491 LTR7 482 - 7 482 76913 179 0 31 150 21 15 100 chain 113039 chr6 171115067 + 27347954 27349400 LTR12C 1709 - 0 1709 33365 77 3 11 64 12 13 149 1 2 4 1 0 24 1 4 31 0 1 17 0 11 73 0 4 68 50 0 36 2 0 8 1 0 127 0 278 418 0 10 279 chain 2611 chr6 171115067 + 27348481 27348529 LTR12C 1709 - 762 919 160254 39 0 109 9 chain 30946 chr6 171115067 + 27374924 27375502 LTR18B 584 - 18 584 82608 21 4 5 10 19 12 10 1 0 40 1 0 24 0 1 4 14 0 123 98 87 14 0 21 5 2 1 188 chain 110948 chr6 171115067 + 27391751 27393170 LTR12C 1709 - 0 1709 33948 129 0 2 110 82 90 94 3 4 52 0 4 106 3 1 5 1 0 85 0 278 749 chain 19245 chr6 171115067 + 27430854 27431065 L1PA4 6152 + 5941 6152 129395 211 chain 3784 chr6 171115067 + 27434009 27434057 MLT1D 503 + 296 344 210604 31 0 1 7 1 0 9 chain 7894 chr6 171115067 + 27446590 27446672 tRNA-Ser-TCY 82 + 0 82 171699 82 chain 3638 chr6 171115067 + 27447452 27447491 tRNA-Asp-GAY 44 + 0 39 213008 39 chain 162972 chr6 171115067 + 27451874 27454207 SVA_F 1814 - 0 1804 22943 10 2 0 616 230 0 20 48 0 206 0 15 48 78 0 11 0 1 32 51 0 28 138 2 815 chain 10505 chr6 171115067 + 27452504 27452732 SVA_F 1814 - 627 851 75517 10 1 0 56 1 0 116 1 0 4 1 0 38 chain 2212 chr6 171115067 + 27452752 27452800 SVA_F 1814 - 886 936 75517 35 0 1 5 1 2 7 chain 3041 chr6 171115067 + 27453054 27453120 SVA_F 1814 - 1354 1422 75517 23 3 5 40 chain 2294 chr6 171115067 + 27453175 27453206 SVA_F 1814 - 845 890 79319 6 2 16 23 chain 2294 chr6 171115067 + 27453284 27453315 SVA_F 1814 - 890 921 79319 31 chain 7894 chr6 171115067 + 27463592 27463674 tRNA-Ser-TCY 82 + 0 82 171698 82 chain 7894 chr6 171115067 + 27470817 27470899 tRNA-Ser-TCY 82 + 0 82 171697 82 chain 3638 chr6 171115067 + 27471522 27471561 tRNA-Asp-GAY 44 + 0 39 213007 39 chain 7012 chr6 171115067 + 27473615 27473688 tRNA-Ser-TCA_ 82 - 9 82 177383 73 chain 3897 chr6 171115067 + 27487307 27487350 tRNA-Gln-CAG 43 + 0 43 208901 43 chain 62211 chr6 171115067 + 27497149 27497852 SVA_B 1603 - 2 698 51795 10 2 0 613 4 3 50 4 0 20 chain 6277 chr6 171115067 + 27500000 27500068 tRNA-Ser-TCY 82 + 14 82 182963 68 chain 7763 chr6 171115067 + 27509553 27509635 tRNA-Ser-TCY 82 - 0 82 172525 82 chain 7885 chr6 171115067 + 27513467 27513549 tRNA-Ser-TCA_ 82 + 0 82 171776 82 chain 3897 chr6 171115067 + 27515559 27515602 tRNA-Gln-CAG 43 - 0 43 208905 43 chain 7641 chr6 171115067 + 27521191 27521273 tRNA-Ser-TCY 82 - 0 82 173280 82 chain 3547 chr6 171115067 + 27529962 27529999 tRNA-Arg-AGA 37 + 0 37 214598 37 chain 30917 chr6 171115067 + 27535845 27537374 MER4A 717 + 0 711 82656 25 1 0 18 0 1 78 7 8 46 11 90 13 0 1 7 3 0 14 7 9 60 39 79 21 23 30 58 628 0 36 331 14 103 chain 22241 chr6 171115067 + 27536940 27537214 AluSp 311 + 0 265 119163 128 9 0 137 chain 26604 chr6 171115067 + 27544808 27545137 AluY 311 + 0 309 97637 133 18 1 166 3 0 9 chain 6872 chr6 171115067 + 27559592 27559665 tRNA-Lys-AAA 73 - 0 73 178419 73 chain 6939 chr6 171115067 + 27560599 27560671 tRNA-Met-i 72 - 0 72 177902 72 chain 83441 chr6 171115067 + 27564499 27565480 LTR5B 1012 - 0 1012 42143 305 2 1 568 0 28 98 0 4 8 chain 9448 chr6 171115067 + 27565486 27565608 MER2 342 - 108 228 163324 58 2 0 62 chain 10690 chr6 171115067 + 27568274 27568418 LTR43 600 + 192 336 157452 65 4 0 6 0 4 69 chain 6429 chr6 171115067 + 27570346 27570454 tRNA-Leu-TTG 101 - 0 101 181791 34 2 1 11 18 12 43 chain 6507 chr6 171115067 + 27573415 27573524 tRNA-Leu-TTG 101 - 0 101 181190 34 2 1 11 11 8 8 4 0 39 chain 25318 chr6 171115067 + 27574226 27574520 AluSq10 312 - 19 312 103134 165 1 0 128 chain 50301 chr6 171115067 + 27593230 27593932 MER4A 717 - 0 709 58791 206 0 3 13 12 1 63 9 4 21 16 24 109 11 23 242 chain 24922 chr6 171115067 + 27596185 27596474 AluSp 311 - 12 301 105209 289 chain 3656 chr6 171115067 + 27599199 27599237 tRNA-Ile-ATA 38 + 0 38 212664 38 chain 32134 chr6 171115067 + 27600952 27601369 LTR3B 427 + 11 424 80632 98 5 6 13 0 1 203 17 11 81 chain 179259 chr6 171115067 + 27601810 27604092 HERVL-int 5654 - 3382 5654 21055 183 0 9 279 0 10 68 1 2 382 9 10 205 9 0 106 10 9 177 1 2 53 4 6 134 33 0 51 4 10 345 15 18 107 1 0 4 6 7 95 chain 7318 chr6 171115067 + 27610038 27611335 L1MB1 2102 + 1279 1934 175312 15 9 19 68 1146 494 59 chain 11059 chr6 171115067 + 27615849 27615990 LTR8 732 + 582 725 155964 69 0 2 72 chain 4584 chr6 171115067 + 27618730 27618779 tRNA-Val-GTY 66 - 17 66 199825 49 chain 132413 chr6 171115067 + 27620707 27622181 SVA_B 1603 + 47 1601 27541 805 1 0 13 1 0 63 0 78 160 1 5 430 chain 26096 chr6 171115067 + 27623560 27623877 AluY 311 + 1 309 99637 71 9 0 237 chain 23942 chr6 171115067 + 27631936 27632261 AluSp 311 + 0 311 110667 45 1 2 85 24 7 136 0 2 34 chain 3485 chr6 171115067 + 27636361 27636400 tRNA-Ile-ATT 40 + 0 39 215603 39 chain 4702 chr6 171115067 + 27638367 27638416 tRNA-Arg-CGY_ 50 - 1 50 198516 49 chain 7136 chr6 171115067 + 27640230 27640310 tRNA-Ser-TCG 80 - 0 80 176509 80 chain 4584 chr6 171115067 + 27648908 27648957 tRNA-Val-GTY 66 - 17 66 199824 49 chain 22462 chr6 171115067 + 27649216 27649511 AluSp 311 + 0 289 118187 48 6 5 72 8 3 161 chain 3292 chr6 171115067 + 27650488 27650527 tRNA-Val-GTG 73 + 1 40 219150 39 chain 23144 chr6 171115067 + 27651527 27651803 AluSp 311 + 0 292 114917 111 0 17 147 1 0 17 chain 7121 chr6 171115067 + 27652473 27652547 tRNA-Thr-ACY_ 74 - 0 74 176618 74 chain 3729 chr6 171115067 + 27655966 27656005 tRNA-Ile-ATT 40 + 0 39 211493 39 chain 15993 chr6 171115067 + 27677651 27677863 Tigger3b 1229 - 297 525 138371 14 0 7 46 0 4 59 0 2 34 0 1 41 0 2 18 chain 5259 chr6 171115067 + 27688903 27688969 tRNA-Leu-TTA 75 - 6 72 192427 66 chain 6859 chr6 171115067 + 27694472 27694546 tRNA-Thr-ACY_ 74 + 0 74 178513 74 chain 5224 chr6 171115067 + 27696339 27696399 tRNA-Val-GTG 73 - 13 73 192795 60 chain 27178 chr6 171115067 + 27702017 27702322 AluYk4 311 + 0 305 95672 305 chain 24824 chr6 171115067 + 27718102 27718411 AluSp 311 + 2 311 105745 309 chain 4584 chr6 171115067 + 27721202 27721251 tRNA-Val-GTY 66 - 17 66 199823 49 chain 42930 chr6 171115067 + 27738224 27738868 LTR6A 649 - 0 649 65503 62 1 0 14 1 0 4 6 7 5 1 0 10 4 5 251 2 1 34 0 4 148 3 0 5 17 20 35 16 19 25 chain 3052 chr6 171115067 + 27740108 27740141 5S 121 - 79 112 223952 33 chain 36864 chr6 171115067 + 27741685 27742149 LTR2 463 + 0 463 73707 154 4 2 208 11 12 87 chain 77624 chr6 171115067 + 27742238 27743207 LTR5_Hs 974 - 0 974 44684 103 12 10 30 0 7 168 1 0 188 0 1 178 0 1 121 1 0 167 chain 6725 chr6 171115067 + 27745663 27745735 tRNA-Met-i 72 + 0 72 179510 72 chain 27153 chr6 171115067 + 27746931 27747304 MER61-int 3695 + 608 1145 95749 30 0 96 82 0 48 219 12 29 6 0 3 24 chain 44030 chr6 171115067 + 27760496 27761091 LTR71B 605 - 0 605 64167 19 1 2 50 1 2 181 1 2 168 0 3 26 20 23 18 0 1 110 chain 5318 chr6 171115067 + 27763641 27763711 tRNA-Gln-CAA 69 - 0 69 191843 13 2 1 55 chain 40201 chr6 171115067 + 27764946 27765525 MER4A 717 + 125 717 69027 125 4 11 7 0 5 85 5 6 15 19 20 89 22 11 8 0 3 30 0 1 28 0 5 59 0 1 83 chain 24502 chr6 171115067 + 27770981 27771270 AluSp 311 - 16 305 107534 289 chain 25077 chr6 171115067 + 27789774 27790187 MER39B 650 - 11 453 104428 44 8 9 40 12 14 150 0 4 19 26 31 91 0 1 4 7 23 12 chain 52331 chr6 171115067 + 27793623 27794403 LTR5_Hs 974 - 177 973 57412 103 95 112 6 1 0 8 0 1 99 0 1 178 0 1 121 1 0 98 3 1 67 chain 6195 chr6 171115067 + 27793728 27793802 LTR5_Hs 974 - 649 724 183619 36 0 1 38 chain 28342 chr6 171115067 + 27794757 27795119 SVA_F 1814 - 540 852 91789 106 49 0 40 2 1 165 chain 2488 chr6 171115067 + 27794863 27794895 SVA_F 1814 - 936 967 231126 22 1 0 9 chain 101165 chr6 171115067 + 27795142 27796292 SVA_D 2077 - 869 2076 36473 170 0 2 68 29 72 859 0 12 24 chain 29340 chr6 171115067 + 27824607 27824918 AluYb8 318 - 7 318 87344 311 chain 5035 chr6 171115067 + 27826919 27827035 MER2 342 + 143 261 194778 15 21 22 35 13 14 32 chain 6907 chr6 171115067 + 27838210 27838300 MER30B 195 + 101 191 178140 90 chain 28636 chr6 171115067 + 27843652 27843957 AluYa5 310 + 0 304 90574 132 1 0 172 chain 6290 chr6 171115067 + 27844996 27845073 LTR8 732 - 23 101 182881 6 0 1 71 chain 9515 chr6 171115067 + 27848486 27848606 LTR8 732 - 581 701 162997 120 chain 41417 chr6 171115067 + 27850538 27851053 MER41A 554 + 0 530 67398 48 0 1 138 0 10 208 0 4 121 chain 4055 chr6 171115067 + 27865296 27865343 U7 62 - 14 61 206548 47 chain 54098 chr6 171115067 + 27867459 27868234 MER4E1 777 + 0 777 56295 17 0 3 130 2 0 39 2 0 41 12 9 94 0 19 19 3 0 28 2 1 17 0 1 8 4 12 105 7 0 6 26 11 140 10 14 63 chain 6939 chr6 171115067 + 27870270 27870342 tRNA-Met-i 72 - 0 72 177901 72 chain 5143 chr6 171115067 + 27870697 27870756 tRNA-Gly-GGY 63 - 5 63 193633 4 1 0 54 chain 4808 chr6 171115067 + 27884250 27884302 L1PA5 6144 + 6057 6109 197255 52 chain 21017 chr6 171115067 + 27895906 27896174 THE1B 368 - 63 345 123857 132 2 1 113 0 15 21 chain 127641 chr6 171115067 + 27896202 27897776 THE1B-int 1605 - 5 1605 28661 334 0 1 811 1 26 428 chain 25349 chr6 171115067 + 27897776 27898122 THE1B 368 - 0 368 102965 49 0 10 6 3 1 116 15 14 117 0 15 40 chain 76190 chr6 171115067 + 27911063 27911926 L1HS 6032 + 0 1386 45369 96 0 524 122 1 0 644 chain 46954 chr6 171115067 + 27912917 27913456 L1P1 4361 - 20 556 61254 12 2 1 23 1 0 154 1 0 346 chain 9630 chr6 171115067 + 27924353 27924545 L1PB1 5432 + 5236 5422 162437 22 8 22 20 3 0 12 9 0 14 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 2880 chr6 171115067 + 27971522 27971581 MER41G 495 - 203 264 227371 25 15 17 19 chain 31392 chr6 171115067 + 27972117 27972615 LTR38C 690 + 15 486 81831 248 24 7 64 18 30 8 12 0 21 17 7 86 chain 22530 chr6 171115067 + 27974584 27974879 AluSc 308 + 8 293 117895 141 15 6 101 1 0 37 chain 559812 chr6 171115067 + 27988538 27994690 L1PA3long 6157 + 1 6157 367 964 0 1 920 0 1 2302 0 1 828 0 1 798 2 1 51 0 1 287 chain 24813 chr6 171115067 + 27996712 27996989 L1PA4 6152 + 5874 6151 105820 277 chain 24657 chr6 171115067 + 28003993 28004273 L1PA5 6144 + 5851 6130 106689 40 1 0 239 chain 29636 chr6 171115067 + 28042012 28042325 AluYb8 318 + 0 313 86110 313 chain 38044 chr6 171115067 + 28047634 28048132 LTR10A 586 + 0 536 72068 58 8 17 66 1 0 56 0 29 71 4 3 216 0 2 18 chain 36432 chr6 171115067 + 28050083 28050543 MER9a3 513 - 0 513 74325 66 0 2 11 0 1 96 8 29 52 1 0 60 0 28 148 0 2 18 chain 10084 chr6 171115067 + 28059779 28059900 MER65D 500 - 368 489 160164 121 chain 20729 chr6 171115067 + 28068296 28068570 L1P3 4156 - 955 1234 124860 31 0 1 72 10 14 161 chain 187632 chr6 171115067 + 28068585 28071014 L1PA8 5853 + 3421 5853 20278 11 0 1 4 1 0 202 0 3 52 0 1 224 1 0 137 0 4 40 0 1 4 1 0 110 11 9 24 0 1 177 1 0 20 2 0 561 0 2 76 16 15 133 1 0 4 0 5 297 2 0 25 1 0 44 2 0 51 1 0 4 30 32 67 1 0 91 chain 3886 chr6 171115067 + 28073944 28073988 MER110A 451 + 41 85 209089 44 chain 68401 chr6 171115067 + 28074221 28074976 L1PA3long 6157 + 5400 6156 49088 418 0 1 337 chain 6837 chr6 171115067 + 28095060 28095263 MLT1B 390 - 42 256 178676 12 0 4 45 35 35 14 11 18 16 37 37 33 chain 21874 chr6 171115067 + 28102169 28102471 AluSp 311 + 0 302 120732 87 20 24 125 3 0 33 1 0 33 chain 3549 chr6 171115067 + 28171348 28171388 MER21C 908 - 826 866 214568 40 chain 7763 chr6 171115067 + 28180814 28180896 tRNA-Ser-AGY 82 + 0 82 172523 82 chain 30427 chr6 171115067 + 28190214 28190532 AluYb8 318 - 0 318 83605 318 chain 3652 chr6 171115067 + 28190587 28190642 LTR39 781 - 680 734 212773 30 4 3 21 chain 34771 chr6 171115067 + 28202813 28203233 MER4E 760 - 0 419 76516 91 1 0 328 chain 22128 chr6 171115067 + 28224962 28225321 L1PA8 5853 + 5486 5845 119671 36 1 0 38 13 12 36 2 0 6 0 4 60 2 1 6 0 7 8 8 4 36 2 1 19 1 0 85 chain 5639 chr6 171115067 + 28225433 28225502 MER58D 378 + 293 363 188670 52 0 1 17 chain 4247 chr6 171115067 + 28246559 28246761 L1MC1 2226 - 42 233 203902 29 51 54 18 5 0 6 66 57 27 chain 377883 chr6 171115067 + 28273603 28278896 L1PB1 5432 - 10 5385 10818 18 1 0 12 1 0 22 1 0 19 34 27 16 21 8 4 1 0 16 1 0 44 1 0 13 5 4 51 2 0 9 2 0 3 2 0 11 4 3 8 2 0 17 16 14 19 0 1 149 0 1 66 2 0 59 3 11 26 6 9 286 1 5 91 6 14 297 1 6 98 0 3 6 1 0 195 8 11 23 1 2 520 10 28 144 7 15 126 1 4 53 20 33 206 0 3 6 0 5 88 4 0 309 0 1 64 1 3 707 0 1 11 10 8 160 0 2 94 0 1 310 8 12 180 0 1 19 0 4 34 52 50 34 5 8 80 3 2 12 3 9 104 4 6 67 2 4 19 4 17 4 0 1 16 1 2 26 2 3 62 chain 82982 chr6 171115067 + 28295649 28296702 MER11C 1089 - 20 1089 42343 4 0 1 144 1 0 56 0 1 125 0 1 38 7 9 304 1 0 59 6 10 61 0 9 247 chain 11446 chr6 171115067 + 28298270 28298440 Tigger4a 237 + 56 228 154512 115 2 1 5 5 0 7 0 7 6 0 1 30 chain 18802 chr6 171115067 + 28308067 28308423 THE1C 375 + 0 363 130672 44 0 3 20 1 15 9 14 0 22 12 32 7 16 0 9 0 1 14 0 2 8 16 12 29 6 7 129 chain 4159 chr6 171115067 + 28318241 28318373 MIR 256 + 50 184 205101 33 45 44 18 14 17 22 chain 23815 chr6 171115067 + 28335665 28335947 L1PA5 6144 - 0 288 111395 138 0 7 120 1 0 23 chain 26904 chr6 171115067 + 28366412 28366724 AluY 311 + 0 297 96611 126 15 0 171 chain 110378 chr6 171115067 + 28371592 28372860 L1PA6 6164 - 4 1276 34098 136 4 8 1128 chain 2947 chr6 171115067 + 28378050 28378081 U2 167 + 0 31 226115 31 chain 4702 chr6 171115067 + 28384152 28384206 MER5A1 166 - 30 84 198508 54 chain 25889 chr6 171115067 + 28406238 28406614 THE1C 375 - 2 375 100485 24 1 0 134 7 9 67 26 30 55 8 0 54 chain 14286 chr6 171115067 + 28412709 28412915 LTR12 884 - 596 788 143599 144 24 10 38 chain 110849 chr6 171115067 + 28436287 28437693 LTR12C 1709 - 18 1709 33985 120 0 3 189 15 18 10 34 34 89 0 4 85 2 1 20 2 0 6 1 0 104 0 278 293 0 1 436 chain 5959 chr6 171115067 + 28442336 28442402 tRNA-Thr-ACG_ 70 - 4 70 185607 66 chain 7546 chr6 171115067 + 28446399 28446481 tRNA-Leu-CTY 82 - 0 82 173899 82 chain 27753 chr6 171115067 + 28452333 28452623 AluYa5 310 - 9 299 93855 290 chain 5885 chr6 171115067 + 28456777 28456843 tRNA-Thr-ACG_ 70 - 4 70 186336 66 chain 86816 chr6 171115067 + 28458823 28459826 LTR13 1007 + 0 1007 40850 304 1 0 71 10 11 537 0 4 80 chain 133923 chr6 171115067 + 28469291 28470908 SVA_B 1603 + 7 1602 27230 15 29 0 17 0 2 537 0 1 355 34 0 6 3 42 32 1 0 588 chain 100693 chr6 171115067 + 28479434 28480811 LTR12C 1709 + 0 1700 36583 278 5 14 46 0 43 82 5 6 181 0 278 184 1 0 4 4 2 106 11 4 32 0 2 257 25 3 107 10 32 39 chain 3656 chr6 171115067 + 28505366 28505404 tRNA-Ile-ATA 38 + 0 38 212663 38 chain 6885 chr6 171115067 + 28510891 28510963 tRNA-Arg-CGA 73 - 1 73 178321 72 chain 70615 chr6 171115067 + 28514771 28515961 L1PB1 5432 + 4300 5422 48105 163 47 13 148 9 6 72 4 7 395 19 10 24 1 0 6 1 0 12 2 0 3 2 0 10 2 0 51 18 16 13 7 10 20 2 1 16 68 54 20 1 0 23 1 0 11 1 0 18 chain 38553 chr6 171115067 + 28534722 28535182 LTR2 463 - 0 463 71363 405 0 3 55 chain 5562 chr6 171115067 + 28557155 28557225 tRNA-Gln-CAA 69 + 0 69 189465 55 2 1 13 chain 7894 chr6 171115067 + 28565116 28565198 tRNA-Ser-AGY 82 - 0 82 171695 82 chain 19388 chr6 171115067 + 28567211 28567552 THE1B 368 + 0 368 128978 44 24 39 24 10 11 54 1 0 24 1 0 5 29 42 125 chain 6713 chr6 171115067 + 28574932 28575004 tRNA-Ala-GCY_ 72 + 0 72 179594 72 chain 45120 chr6 171115067 + 28575685 28576223 LTR14 556 + 2 556 62910 208 0 8 245 1 0 7 4 13 73 chain 49091 chr6 171115067 + 28585625 28586237 PABL_A 660 - 45 660 59676 311 0 3 165 3 4 42 6 5 85 chain 563438 chr6 171115067 + 28589020 28595167 L1PA3long 6157 + 12 6157 255 1624 7 1 276 0 1 2030 0 1 1362 0 1 13 0 1 835 chain 22777 chr6 171115067 + 28595925 28596211 AluSg4 309 - 12 295 116696 12 3 0 271 chain 108524 chr6 171115067 + 28606437 28608082 LTR12C 1709 - 0 1709 34554 61 33 36 134 102 0 78 42 43 12 10 9 83 1 0 25 0 4 106 9 6 38 13 15 222 1 0 19 0 119 318 0 43 45 7 3 9 8 12 269 chain 6930 chr6 171115067 + 28611221 28611293 tRNA-Ala-GCG 72 + 0 72 177963 72 chain 6199 chr6 171115067 + 28615990 28616057 tRNA-Thr-ACG_ 70 - 3 70 183595 67 chain 24444 chr6 171115067 + 28618751 28619035 AluSq10 312 + 8 293 107838 253 0 1 31 chain 18417 chr6 171115067 + 28621624 28621921 Tigger3b 1229 + 648 945 131725 49 3 1 7 0 4 56 19 20 96 14 11 53 chain 5356 chr6 171115067 + 28626023 28626085 tRNA-Ala-GCY_ 72 - 10 72 191481 62 chain 4764 chr6 171115067 + 28627951 28628023 MLT2D 439 + 52 128 197768 36 1 5 35 chain 20898 chr6 171115067 + 28633203 28633444 AluY 311 + 68 309 124280 241 chain 21819 chr6 171115067 + 28637281 28637547 AluSq10 312 - 25 291 120951 112 1 0 42 0 1 111 chain 6686 chr6 171115067 + 28641612 28641684 tRNA-Ala-GCG 72 - 0 72 179784 72 chain 3071 chr6 171115067 + 28650929 28650963 LTR5_Hs 974 + 783 817 223560 34 chain 498549 chr6 171115067 + 28651188 28658966 HERVK-int 6823 + 0 6561 6926 5 1 0 12 4 2 23 1 0 20 1 0 12 1 0 26 1 0 21 1 0 12 2 0 322 1 0 159 0 1 4 1 0 37 10 8 24 1 0 18 100 0 7 0 3 303 6 5 380 1 0 52 1 0 37 22 36 256 0 2 9 28 33 7 0 1 179 3 6 374 0 1 331 0 3 76 6 7 226 11 12 4 1 0 17 8 0 799 981 0 1083 3 0 83 7 0 476 1 0 14 1 0 184 0 2 11 1 0 23 1 0 42 0 1 57 1 0 36 1 0 122 1 0 51 3 0 5 1 0 8 4 2 73 2 0 12 1 0 21 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 6 4 10 3 0 28 40 29 10 19 12 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 15 chain 6713 chr6 171115067 + 28678365 28678437 tRNA-Ala-GCY_ 72 + 0 72 179593 72 chain 6844 chr6 171115067 + 28687480 28687552 tRNA-Ala-GCY_ 72 + 0 72 178634 72 chain 6654 chr6 171115067 + 28693794 28693868 tRNA-Thr-ACY_ 74 + 0 74 180058 74 chain 6181 chr6 171115067 + 28697091 28697163 tRNA-Ala-GCY_ 72 + 0 72 183739 72 chain 7021 chr6 171115067 + 28710728 28710801 tRNA-Arg-CGG 73 - 0 73 177321 73 chain 37239 chr6 171115067 + 28713761 28714333 LTR66 600 - 0 600 73184 115 1 34 50 12 0 10 53 0 13 3 0 7 0 3 74 0 59 163 5 6 66 chain 6160 chr6 171115067 + 28715520 28715593 tRNA-Lys-AAA 73 + 0 73 183905 73 chain 6704 chr6 171115067 + 28726140 28726212 tRNA-Ala-GCA 72 - 0 72 179663 72 chain 5693 chr6 171115067 + 28731374 28731447 tRNA-Phe-TTY 73 - 1 73 188179 31 1 0 41 chain 6258 chr6 171115067 + 28732163 28732232 tRNA-Phe-TTY 73 + 0 69 183110 69 chain 203801 chr6 171115067 + 28736226 28741726 HERVS71-int 4705 - 429 3916 18938 8 1 0 17 118 80 22 2 0 10 2 0 15 2 0 14 10 8 8 1 0 47 23 18 13 4 2 11 2 1 39 1 0 21 1 0 14 2 0 26 1 0 4 6 4 15 1 0 22 5 2 31 1 0 4 1 0 6 1 0 21 12 8 26 1 0 4 2 0 6 1 0 6 1 0 29 1 0 4 11 7 4 1 0 11 1 0 11 2 0 11 1 0 35 1 0 16 2 0 55 7 4 31 1 0 28 1 0 7 25 20 57 2 0 19 1 0 12 1 0 6 1 0 11 18 14 20 8 7 5 1 0 9 15 9 19 20 14 5 1 0 9 3 0 10 1 0 14 2 1 17 5 2 22 5 0 19 1 0 40 4 0 11 4 2 13 1 0 8 101 75 19 1 0 10 7 5 16 1 0 20 76 7 14 1 0 9 1 0 7 3 1 37 3 1 4 1 0 25 3 1 12 61 46 16 1 0 10 4 1 13 1 0 11 15 9 31 1 0 8 2 0 16 3 1 42 1 0 18 1 0 55 1 0 38 3 0 11 1 0 13 3 1 12 18 68 4 1 0 8 74 0 16 14 7 12 7 2 21 28 5 4 1 0 11 2 0 9 1 0 11 1645 1 7 8 0 48 1 10 621 16 15 69 11 14 5 3 0 554 1 0 148 11 2 19 chain 43648 chr6 171115067 + 28744378 28744990 LTR71B 605 + 0 595 64631 127 61 52 173 3 1 163 6 0 79 chain 6826 chr6 171115067 + 28757546 28757618 tRNA-Ala-GCA 72 - 0 72 178751 72 chain 6994 chr6 171115067 + 28758498 28758571 tRNA-Phe-TTY 73 - 0 73 177511 73 chain 6198 chr6 171115067 + 28763740 28763812 tRNA-Ala-GCY_ 72 - 0 72 183601 72 chain 2947 chr6 171115067 + 28764658 28764689 U2 167 + 0 31 226114 31 chain 25148 chr6 171115067 + 28769970 28770264 AluSq4 311 + 0 293 104011 132 1 0 161 chain 6245 chr6 171115067 + 28770576 28770647 tRNA-Ala-GCA 72 - 0 72 183215 22 0 1 49 chain 6741 chr6 171115067 + 28775609 28775682 tRNA-Phe-TTY 73 - 0 73 179390 73 chain 6067 chr6 171115067 + 28779848 28779920 tRNA-Ala-GCY_ 72 - 0 72 184694 72 chain 20815 chr6 171115067 + 28781225 28781484 AluSx 319 + 7 266 124553 259 chain 6695 chr6 171115067 + 28785011 28785083 tRNA-Ala-GCA 72 - 0 72 179729 72 chain 6391 chr6 171115067 + 28791092 28791166 tRNA-Phe-TTY 73 - 0 73 182096 33 1 0 40 chain 193658 chr6 171115067 + 28797759 28800017 L1PA6 6164 + 3939 6162 19718 423 0 4 283 1 0 679 10 0 429 24 0 396 4 0 9 chain 21830 chr6 171115067 + 28805609 28805884 AluY 311 + 10 294 120897 113 5 4 116 0 12 18 2 0 21 chain 6975 chr6 171115067 + 28806220 28806292 tRNA-Ala-GCY_ 72 - 0 72 177646 72 chain 405793 chr6 171115067 + 28817997 28822685 L1PA5 6144 + 1436 6129 9917 664 0 3 67 2 0 42 1 0 101 9 7 876 1 0 1145 0 4 415 0 1 967 0 1 190 0 1 72 5 6 131 chain 8544 chr6 171115067 + 28825653 28825756 MER57A1 433 + 325 428 168050 103 chain 6975 chr6 171115067 + 28831461 28831533 tRNA-Ala-GCY_ 72 - 0 72 177645 72 chain 2737 chr6 171115067 + 28832833 28832911 MER39 703 + 449 528 229654 17 35 36 26 chain 24276 chr6 171115067 + 28833806 28834092 LTR12C 1709 - 733 1018 108803 139 1 0 146 chain 5949 chr6 171115067 + 28835051 28835199 MER6 865 - 646 838 185683 12 32 22 38 0 53 11 17 18 38 chain 3354 chr6 171115067 + 28835863 28835902 7SK 245 - 205 244 217989 39 chain 3689 chr6 171115067 + 28840214 28840254 LTR12E 1234 - 406 446 212116 40 chain 26174 chr6 171115067 + 28842343 28842676 LTR14A 344 - 0 325 99307 177 0 4 127 13 1 16 chain 7021 chr6 171115067 + 28849164 28849237 tRNA-Arg-CGG 73 + 0 73 177319 73 chain 8497 chr6 171115067 + 28863998 28864105 tRNA-Leu-TTG 101 - 0 101 168310 50 1 0 4 3 0 7 2 0 40 chain 5905 chr6 171115067 + 28902472 28902544 MSTA 426 - 34 107 186139 24 0 1 48 chain 8044 chr6 171115067 + 28908829 28908935 tRNA-Leu-TTG 101 + 0 101 170790 40 2 0 9 6 3 49 chain 3897 chr6 171115067 + 28909406 28909449 tRNA-Gln-CAG 43 - 0 43 208904 43 chain 7939 chr6 171115067 + 28911398 28911480 tRNA-Leu-CTY 82 - 0 82 171395 82 chain 4220 chr6 171115067 + 28912351 28912395 tRNA-Met_ 45 + 0 44 204301 44 chain 104933 chr6 171115067 + 28916702 28918133 LTR12C 1709 - 0 1709 35517 134 1 0 31 2 104 10 102 0 89 37 34 79 0 4 107 2 0 6 1 0 35 0 2 93 0 278 266 0 1 436 chain 6881 chr6 171115067 + 28918805 28918878 tRNA-Lys-AAA 73 + 0 73 178342 73 chain 4220 chr6 171115067 + 28921070 28921114 tRNA-Met_ 45 - 1 45 204302 44 chain 139019 chr6 171115067 + 28925439 28927141 LTR12C 1709 + 0 1709 26297 104 5 4 250 0 1 328 0 1 149 1 0 240 0 6 28 1 0 6 2 0 107 0 4 481 chain 383542 chr6 171115067 + 28929284 28935935 L1PB1 5432 + 34 5424 10654 18 1 2 250 1 2 258 299 0 244 0 2 168 1 0 107 0 1 142 0 2 86 341 332 175 1 0 458 0 2 210 7 0 53 0 4 280 624 0 309 0 1 28 7 0 190 0 1 124 1 5 122 1 3 113 5 6 107 10 14 284 0 2 99 0 1 266 1 2 110 14 9 81 0 1 96 1 0 99 2 1 22 0 1 176 1 2 9 3 0 13 8 7 13 1 0 9 343 13 51 2 1 11 3 13 36 1 0 12 0 6 13 48 34 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 6994 chr6 171115067 + 28949448 28949521 tRNA-Phe-TTY 73 - 0 73 177510 73 chain 6975 chr6 171115067 + 28949975 28950047 tRNA-Glu-GAG_ 72 + 0 72 177647 72 chain 20433 chr6 171115067 + 28955627 28955862 AluSp 311 + 5 239 125800 106 2 1 127 chain 7808 chr6 171115067 + 28956778 28956860 tRNA-Leu-CTY 82 + 0 82 172260 82 chain 8214 chr6 171115067 + 28978161 28978395 L1MC1 2226 + 1918 2098 169867 61 18 13 47 93 44 15 chain 17255 chr6 171115067 + 28983334 28983639 LTR12C 1709 + 778 1086 134913 51 0 81 133 78 0 43 chain 7543 chr6 171115067 + 28991240 28991427 L1PB1 5432 - 9 175 173912 7 1 0 12 6 5 7 1 0 22 1 0 22 4 2 14 9 6 18 16 6 6 1 0 15 1 0 24 chain 7108 chr6 171115067 + 29014289 29014493 L1MA10 1535 + 1329 1501 176700 59 42 25 24 51 36 28 chain 7547 chr6 171115067 + 29024375 29024457 L1PA2 6032 + 5950 6032 173889 82 chain 320348 chr6 171115067 + 29026380 29030459 L1PA8 5853 - 7 4106 12583 86 1 0 7 0 17 23 37 35 70 2 0 46 1 0 191 44 1 361 2 0 3 1 0 18 6 10 219 5 6 90 0 1 101 0 1 225 0 1 865 7 9 72 5 0 381 1 2 22 0 4 19 21 60 427 0 3 393 0 10 49 7 0 271 chain 184560 chr6 171115067 + 29033344 29035715 L1PA4 6152 - 0 2077 20540 7 0 2 653 300 0 993 0 4 418 chain 45587 chr6 171115067 + 29036238 29037122 L1PB1 5432 + 3934 4505 62422 385 307 0 20 7 0 78 0 1 87 chain 3758 chr6 171115067 + 29037122 29037207 L1PB1 5432 + 4506 4585 210979 16 7 11 18 2 1 14 9 0 19 chain 17296 chr6 171115067 + 29037208 29037464 L1PB1 5432 + 4585 4838 134794 41 3 0 143 1 0 28 0 1 7 16 16 17 chain 39821 chr6 171115067 + 29037464 29038089 L1PB1 5432 + 4839 5414 69592 264 31 11 24 1 0 9 1 0 11 15 9 52 1 0 10 11 10 42 1 0 17 15 0 29 7 4 15 2 0 24 1 0 22 0 3 9 1 0 10 chain 20632 chr6 171115067 + 29046551 29046838 L1PA7 6471 + 6177 6466 125184 96 0 1 34 15 16 122 8 8 12 chain 48227 chr6 171115067 + 29059470 29060140 L1PA8 5853 - 0 676 60295 92 2 1 19 2 1 31 0 1 4 27 26 40 0 1 26 3 1 48 1 0 53 1 11 321 chain 28356 chr6 171115067 + 29060458 29060826 L1PA8 5853 - 0 366 91744 92 2 1 5 0 5 9 2 1 52 1 0 9 1 0 71 2 0 44 1 0 77 chain 27229 chr6 171115067 + 29073550 29073914 L1PA6 6164 - 3 370 95501 11 0 3 127 5 4 9 1 0 27 1 0 4 4 7 175 chain 70871 chr6 171115067 + 29082983 29083740 L1PA2 6032 - 11 768 47976 757 chain 20881 chr6 171115067 + 29092279 29092566 AluSq2 311 + 12 298 124356 170 0 1 23 2 3 68 10 7 14 chain 28108 chr6 171115067 + 29103175 29103502 L1PA6 6164 - 5 332 92613 327 chain 102975 chr6 171115067 + 29122813 29124033 L1PA6 6164 - 5 1235 35996 403 0 10 348 0 1 447 2 1 20 chain 29846 chr6 171115067 + 29124033 29124389 L1P1 4361 + 3337 3691 84502 346 2 0 8 chain 22911 chr6 171115067 + 29131137 29131395 L1PA2 6032 - 0 259 116054 108 0 1 150 chain 4048 chr6 171115067 + 29131395 29131438 L1PA2 6032 + 5725 5768 206663 43 chain 349820 chr6 171115067 + 29144390 29148364 L1PA4 6152 - 6 3999 11611 107 0 1 25 0 7 170 1 2 1019 5 0 6 6 11 928 0 8 169 0 2 175 1 0 53 1 0 249 0 1 323 0 1 736 chain 100086 chr6 171115067 + 29152854 29154132 L1PA8 5853 - 0 1272 36752 92 2 1 19 3 2 43 9 8 9 2 1 70 2 0 44 1 0 424 0 3 128 2 0 428 chain 38261 chr6 171115067 + 29154820 29155302 MER9a3 513 + 0 485 71762 18 0 2 86 4 5 142 6 5 175 0 1 51 chain 207210 chr6 171115067 + 29156325 29158895 L1PA7 6471 - 34 5109 18702 112 0 1 6 1 0 644 0 1 4 1 0 45 0 4 96 15 22 547 1 0 102 0 2495 329 2 0 394 0 2 58 12 13 5 1 0 195 chain 3371 chr6 171115067 + 29159884 29159921 L1PA15 4387 + 2264 2301 217652 37 chain 49278 chr6 171115067 + 29165599 29166176 L1PA6 6164 - 4 579 59529 6 3 0 138 2 0 290 0 3 138 chain 3383 chr6 171115067 + 29169595 29169630 MER52A 1651 + 795 830 217424 35 chain 13829 chr6 171115067 + 29179643 29179797 L1PA5 6144 - 7 162 145140 142 0 1 12 chain 75988 chr6 171115067 + 29185045 29186131 THE1C-int 1605 + 497 1598 45491 176 94 88 24 3 11 151 9 8 218 1 11 110 0 3 97 0 1 106 0 1 37 1 0 59 chain 53116 chr6 171115067 + 29189545 29190143 L1PA4 6152 + 5555 6152 56952 492 0 1 99 2 0 5 chain 9622 chr6 171115067 + 29201251 29201357 L1PA2 6032 + 5926 6032 162481 106 chain 447213 chr6 171115067 + 29206774 29212330 L1PA7 6471 - 14 5592 8841 30 0 1 40 5 6 249 2 0 431 0 2 82 1 0 191 0 1 29 0 8 121 1 0 4 0 1 70 1 0 200 5 0 1155 0 1 64 17 17 256 0 1 743 0 13 96 8 9 391 0 1 656 0 1 183 0 1 59 4 1 57 22 24 34 1 0 4 0 1 344 chain 28152 chr6 171115067 + 29221568 29222026 MER4A1 472 + 0 472 92454 14 9 11 16 0 7 132 51 52 159 10 14 67 chain 30647 chr6 171115067 + 29230771 29231269 LTR19A 502 + 0 502 83127 71 0 1 61 0 1 52 38 1 15 0 36 73 1 2 63 45 46 38 0 1 41 chain 18441 chr6 171115067 + 29232825 29233114 THE1B 368 - 77 368 131671 48 2 1 10 1 0 18 16 24 21 1 0 99 12 9 61 chain 540684 chr6 171115067 + 29241225 29247374 L1PA4 6152 + 2 6151 2711 125 14 0 15 10 24 252 0 3 6 4 1 14 6 7 795 8 6 1097 0 1 4 1 0 1692 0 1 2106 chain 13742 chr6 171115067 + 29249119 29249284 L1PA7 6471 - 2268 2433 145461 165 chain 53664 chr6 171115067 + 29249284 29249938 L1PA7 6471 - 2434 3092 56571 202 2 0 272 10 14 97 0 2 71 chain 182345 chr6 171115067 + 29249953 29252169 L1PA7 6471 + 4233 6467 20755 443 0 4 275 1 0 367 0 1 299 0 2 53 9 1 373 0 4 130 10 11 123 1 16 132 chain 4686 chr6 171115067 + 29263902 29263957 MER52D 1964 + 1150 1205 198687 55 chain 32612 chr6 171115067 + 29264210 29264654 LTR7 482 + 0 476 79833 101 15 14 110 4 3 39 0 31 21 0 2 98 13 14 43 chain 175358 chr6 171115067 + 29266830 29268793 L1PA4 6152 + 4169 6141 21413 179 0 4 57 0 1 380 0 2 512 0 4 510 1 0 68 1 0 255 chain 257619 chr6 171115067 + 29276656 29280059 L1PA7 6471 - 4 3176 15836 9 0 1 132 18 18 168 0 1 27 11 0 219 0 1 223 229 0 47 1 0 754 1 0 62 0 5 130 4 3 514 0 1 540 0 1 15 0 1 46 1 5 15 1 0 35 0 3 5 7 2 189 chain 114752 chr6 171115067 + 29290061 29291710 L1PB1 5432 - 10 1630 32860 18 1 0 13 1 0 22 1 0 23 2 0 14 1 0 5 3 1 18 44 31 41 6 5 9 3 2 52 16 10 14 3 2 8 1 0 20 27 17 91 2 1 377 3 0 149 0 10 90 12 18 192 1 0 212 0 1 154 chain 39479 chr6 171115067 + 29302555 29303018 L1PA5 6144 - 7 469 70048 252 1 0 100 0 2 7 3 1 100 chain 26512 chr6 171115067 + 29308444 29308806 THE1D 372 + 0 372 98004 35 2 0 33 1 11 111 0 3 125 0 1 21 2 0 32 chain 196235 chr6 171115067 + 29318421 29321110 L1PA10 4194 - 34 2751 19483 12 1 0 32 11 8 26 4 0 188 0 3 220 2 5 400 0 1 455 6 7 67 1 2 51 3 7 26 10 7 16 29 29 43 20 14 6 0 6 13 0 1 37 0 21 83 11 12 70 0 1 463 1 2 92 1 2 289 chain 447116 chr6 171115067 + 29327967 29334095 L1PA8 5853 + 108 5852 8847 189 23 11 128 0 1 11 8 12 211 0 1 94 25 16 189 0 6 227 20 20 275 1 0 6 0 1 43 2 1 284 0 1 30 3 0 152 3 1 195 0 1 348 0 1 4 12 0 641 0 6 6 22 15 75 0 1 263 0 2 115 23 25 247 0 1 132 10 11 263 1 0 37 318 0 146 45 10 255 0 1 55 10 4 127 5 4 553 1 0 46 2 0 57 0 1 12 2 1 13 7 6 42 2 1 19 1 0 92 chain 3188 chr6 171115067 + 29371584 29371620 MLT1G3-int 901 - 639 675 221185 36 chain 169894 chr6 171115067 + 29374331 29376344 L1PA7 6471 + 4459 6470 22062 1038 2 1 122 1 4 379 0 2 217 7 1 247 chain 2789 chr6 171115067 + 29402229 29402302 L1MA8 2339 - 2265 2339 228886 12 7 8 13 4 3 19 2 3 16 chain 2947 chr6 171115067 + 29422682 29422713 U2 167 + 0 31 226113 31 chain 14848 chr6 171115067 + 29441690 29441852 L1PA4 6152 - 589 751 141785 162 chain 53575 chr6 171115067 + 29441852 29442453 L1PA4 6152 + 5543 6143 56625 349 1 0 251 chain 139411 chr6 171115067 + 29448631 29450427 L1PA7 6471 - 3 1724 26233 9 2 0 150 1 2 170 0 1 240 0 2 180 6 7 86 1 0 155 90 7 91 0 6 117 0 1 5 1 0 42 0 1 4 1 0 445 chain 14218 chr6 171115067 + 29467595 29467766 LTR1 825 - 0 172 143821 93 0 1 78 chain 25323 chr6 171115067 + 29487791 29488084 MER9B 498 - 0 295 103107 97 0 1 166 0 1 30 chain 3755 chr6 171115067 + 29507565 29507609 MER81 114 + 1 45 211049 44 chain 64720 chr6 171115067 + 29525990 29526766 LTR17 781 + 0 781 50689 256 0 1 70 0 1 101 1 2 83 0 1 56 0 1 209 chain 44219 chr6 171115067 + 29530895 29531451 LTR10A 586 - 0 586 63920 65 0 1 244 0 39 11 10 0 226 chain 19036 chr6 171115067 + 29557553 29557882 MER47A 366 - 0 331 130012 19 41 25 13 1 17 99 6 7 72 1 0 44 5 7 28 chain 3823 chr6 171115067 + 29560381 29560456 LTR39 781 + 464 539 210036 31 7 8 23 4 3 10 chain 4874 chr6 171115067 + 29563120 29563179 Tigger2b_Pri 1066 + 52 112 196555 22 0 1 37 chain 4701 chr6 171115067 + 29582541 29582611 L1MC1 2226 + 2129 2196 198521 6 1 0 17 1 0 32 1 0 12 chain 4440 chr6 171115067 + 29619942 29620014 MER45C 884 + 80 153 201455 53 7 8 12 chain 23224 chr6 171115067 + 29647384 29647666 AluSp 311 + 0 287 114570 19 0 1 83 0 4 180 chain 3448 chr6 171115067 + 29650994 29651036 MER65D 500 - 402 444 216246 42 chain 11740 chr6 171115067 + 29658934 29659265 L1PB1 5432 + 5120 5424 153301 18 1 0 9 16 11 9 2 0 52 1 0 18 24 23 20 1 0 16 32 21 10 4 5 14 2 0 6 10 10 8 1 0 21 1 0 10 1 0 19 1 0 4 chain 19758 chr6 171115067 + 29660581 29660847 LTR2 463 - 0 268 127935 88 12 13 141 0 1 25 chain 7584 chr6 171115067 + 29661521 29661611 L1PA15-16 3068 - 2448 2538 173646 90 chain 24902 chr6 171115067 + 29666286 29666586 AluSp 311 - 11 311 105330 300 chain 174715 chr6 171115067 + 29685713 29688053 SVA_E 1901 + 11 1901 21510 142 1 0 664 446 0 110 3 0 974 chain 23360 chr6 171115067 + 29686521 29686942 SVA_E 1901 + 817 1015 67678 26 1 0 80 222 0 92 chain 10256 chr6 171115067 + 29686636 29686822 SVA_E 1901 + 976 1167 100351 39 7 13 67 1 0 72 chain 8662 chr6 171115067 + 29718147 29718248 HY3 101 + 0 101 167410 101 chain 57300 chr6 171115067 + 29742593 29743403 Charlie9 784 + 0 784 54337 33 1 0 10 0 1 110 1 0 41 0 1 256 10 6 4 1 0 8 1 0 4 1 0 4 1 0 6 5 0 5 1 0 4 1 0 15 13 0 184 0 2 90 chain 6716 chr6 171115067 + 29743471 29743560 L1PA10 4194 + 4064 4150 179567 53 3 0 33 chain 496321 chr6 171115067 + 29747564 29753600 L1PA6 6164 + 13 6153 7050 99 1 0 4 16 3 82 0 1 289 1 2 16 2 1 116 0 1 301 0 25 222 4 13 1144 1 2 855 0 1 79 0 8 28 0 1 645 1 2 415 0 4 110 0 2 423 11 9 131 5 7 201 0 60 13 0 1 502 0 1 110 0 2 209 chain 55289 chr6 171115067 + 29753819 29754647 Charlie9 784 + 0 784 55528 32 0 1 119 1 0 35 13 7 120 10 9 134 15 4 9 1 0 8 1 0 6 5 0 8 3 1 10 22 5 276 chain 4778 chr6 171115067 + 29754720 29754816 L1PA10 4194 + 4069 4159 197597 7 3 0 27 6 7 7 3 0 33 1 0 9 chain 3063 chr6 171115067 + 29786178 29786222 LTR16B2 458 + 159 204 223767 11 1 2 32 chain 9944 chr6 171115067 + 29787482 29787614 LTR3B_ 500 - 365 498 160867 11 9 10 112 chain 58152 chr6 171115067 + 29788854 29789679 Charlie9 784 + 0 784 53901 32 0 1 150 16 0 19 9 10 178 0 8 58 8 0 5 3 0 9 1 0 7 2 0 7 1 0 9 1 0 10 20 5 29 1 0 179 3 0 68 chain 13355 chr6 171115067 + 29791914 29792091 THE1C 375 + 199 375 146864 5 0 2 65 3 0 104 chain 6917 chr6 171115067 + 29800208 29800308 Charlie12 129 + 30 129 178070 29 6 7 31 1 0 5 1 0 27 chain 36071 chr6 171115067 + 29813123 29813673 LTR10F 562 + 0 535 74799 111 0 28 89 0 3 31 83 37 182 0 1 16 3 2 35 chain 24827 chr6 171115067 + 29824514 29824830 AluY 311 + 0 299 105735 133 26 9 157 chain 45426 chr6 171115067 + 29843426 29843939 MER9a1 513 - 0 513 62567 513 chain 373712 chr6 171115067 + 29843941 29848450 HERVK9-int 4720 - 2 4684 10968 280 0 96 211 0 3 221 5 53 372 0 1 857 15 20 214 0 4 95 1 0 36 0 1 1008 2 1 219 0 24 840 1 0 17 11 10 12 2 1 64 1 0 4 8 5 13 chain 42674 chr6 171115067 + 29849116 29849606 MER9a1 513 - 22 512 65809 490 chain 33646 chr6 171115067 + 29849963 29850427 Charlie9 784 + 0 457 78178 24 0 1 6 0 1 44 0 1 75 1 0 35 15 7 134 2 1 128 chain 90799 chr6 171115067 + 29863163 29864226 SVA_C 1631 - 216 1481 39356 397 1 0 39 1 48 81 0 40 126 0 116 418 chain 51116 chr6 171115067 + 29887562 29888392 Charlie9 784 + 0 784 58241 30 1 2 122 1 0 12 39 28 78 2 1 5 0 1 25 26 30 123 6 0 4 4 0 9 1 0 6 3 1 7 5 0 8 3 1 10 26 5 198 1 3 75 chain 77522 chr6 171115067 + 29897760 29898685 LTR13A 966 - 12 966 44728 183 1 2 93 11 33 17 0 6 620 chain 3049 chr6 171115067 + 29899491 29899526 MER30B 195 + 16 51 224015 35 chain 155144 chr6 171115067 + 29899807 29901531 SVA_D 2077 + 0 2076 23963 34 1 2 423 0 39 44 0 40 179 0 40 100 0 184 262 1 0 14 0 49 666 chain 43251 chr6 171115067 + 29903952 29904453 MER9a1 513 - 0 513 65116 123 0 2 32 0 9 42 0 1 304 chain 33565 chr6 171115067 + 29904809 29905266 Charlie9 784 + 0 453 78298 24 7 9 121 1 0 12 0 1 20 12 7 133 1 0 126 chain 3049 chr6 171115067 + 29914579 29914614 MER30B 195 + 16 51 224014 35 chain 106232 chr6 171115067 + 29930716 29932034 L1PA7 6471 + 5179 6461 35204 422 0 5 8 1 0 338 9 1 29 0 1 153 0 1 62 39 3 41 0 2 216 chain 147893 chr6 171115067 + 29946659 29948293 L1PA3long 6157 + 4508 6142 24891 1634 chain 4844 chr6 171115067 + 29958046 29958108 L1MA4A 3247 + 1505 1567 196850 62 chain 26191 chr6 171115067 + 29984361 29984697 MER4A1 472 - 115 472 99234 112 0 21 131 0 1 78 1 0 14 chain 166722 chr6 171115067 + 29993427 29995984 L1PB1 5432 + 3093 5360 22429 170 0 1 275 0 3 194 8 1 20 1 0 205 5 6 347 0 1 124 1 0 64 1 2 120 4 0 218 275 0 67 7 6 41 10 3 53 0 2 81 0 24 17 1 0 8 1 0 12 5 1 9 11 9 43 2 1 15 1 0 44 1 0 16 1 0 6 59 44 14 chain 18425 chr6 171115067 + 30000000 30000228 AluY 311 + 69 294 131704 62 3 0 163 chain 546970 chr6 171115067 + 30048380 30054400 L1PA3long 6157 - 1 6157 1835 2893 0 1 85 1 0 2268 1 129 627 0 1 50 0 7 95 chain 3809 chr6 171115067 + 30056601 30056656 MER53 195 + 38 97 210234 30 1 5 24 chain 4007 chr6 171115067 + 30087570 30087621 MLT2D 439 + 4 55 207282 51 chain 3918 chr6 171115067 + 30091117 30091171 MER53 195 - 12 65 208572 6 1 0 47 chain 70311 chr6 171115067 + 30107655 30108493 L1PA7 6471 + 5617 6457 48259 152 0 1 537 8 9 141 chain 9414 chr6 171115067 + 30108779 30109108 AluJo 314 + 3 290 163488 44 7 147 26 182 0 70 chain 29466 chr6 171115067 + 30117445 30117785 L1PA5 6144 - 1 341 86772 340 chain 4035 chr6 171115067 + 30119032 30119161 MIR 256 + 54 195 206841 19 65 77 45 chain 144590 chr6 171115067 + 30132885 30134599 L1PA7 6471 - 1 1718 25384 20 0 3 315 0 1 510 1 0 485 5 0 7 0 5 371 chain 11322 chr6 171115067 + 30165408 30165600 MER2 342 - 47 251 154991 28 40 52 124 chain 4173 chr6 171115067 + 30178608 30178677 MER44D 709 - 558 628 204942 24 11 12 34 chain 101408 chr6 171115067 + 30189273 30190470 SVA_A 1864 - 10 1837 36416 229 0 2 295 0 37 83 2 0 41 8 336 68 1 0 53 0 266 417 chain 23020 chr6 171115067 + 30194404 30194768 MER41C 542 - 0 350 115530 79 6 3 21 1 14 86 49 25 122 chain 4208 chr6 171115067 + 30204286 30204376 L1MA6 2487 - 233 307 204439 22 27 11 41 chain 474667 chr6 171115067 + 30215669 30221147 L1PA5 6144 + 3 6138 7890 81 0 523 5 0 2 77 7 0 72 0 128 157 1 0 5 0 1 2110 1 0 342 1 2 174 0 1 658 0 4 27 0 2 919 0 1 28 0 1 198 0 2 615 chain 85441 chr6 171115067 + 30222356 30223471 THE1A-int 1579 - 468 1579 41370 354 5 1 11 3 0 8 0 3 170 1 0 66 1 0 13 0 1 454 5 6 24 chain 28363 chr6 171115067 + 30233664 30234011 THE1A 353 - 5 351 91721 238 1 0 108 chain 3797 chr6 171115067 + 30240326 30240373 MER4A 717 + 0 47 210427 47 chain 188368 chr6 171115067 + 30247159 30250653 L1MA1 4479 - 289 3150 20203 18 35 10 11 1 0 9 1 0 35 2 0 29 1 0 15 0 5 106 3 0 6 1 0 45 0 1 38 327 16 20 1 0 41 1 0 20 34 26 24 1 0 195 2 0 130 3 0 118 23 14 6 1 0 95 19 16 80 0 1 64 13 11 27 1 0 51 0 3 15 16 17 68 1 0 15 0 4 7 2 1 6 2 0 70 300 0 33 2 1 65 1 0 93 0 2 73 4 5 117 0 1 95 0 3 18 0 9 18 0 1 47 2 1 26 5 1 6 1 0 7 0 9 7 5 1 23 0 3 38 19 23 211 0 2 67 10 12 19 0 5 47 0 2 100 0 1 180 chain 4719 chr6 171115067 + 30324307 30324364 MER20 218 + 98 155 198292 57 chain 9364 chr6 171115067 + 30350466 30350582 MSTB 430 - 298 414 163734 116 chain 126025 chr6 171115067 + 30352996 30354782 L1PB2 3958 + 1118 2874 29091 85 0 1 50 1 0 25 6 7 55 0 2 125 6 9 105 5 4 11 5 4 43 1 4 121 0 1 373 7 8 167 4 5 111 1 2 46 54 12 368 0 1 11 chain 98791 chr6 171115067 + 30374882 30376119 THE1A-int 1579 + 341 1579 37075 851 1 2 385 chain 79160 chr6 171115067 + 30379081 30380028 LTR13_ 950 + 0 950 43973 579 2 1 277 0 4 89 chain 70566 chr6 171115067 + 30380890 30381866 L1PREC2 3366 + 1287 2295 48128 23 1 0 194 0 11 309 19 22 5 3 0 16 3 4 16 2 0 5 1 3 230 0 8 113 0 1 6 0 12 30 chain 30650 chr6 171115067 + 30389808 30390154 L1PA4 6152 - 9 355 83118 346 chain 112992 chr6 171115067 + 30390430 30391683 L1PA3long 6157 - 11 1266 33381 838 0 1 242 0 1 173 chain 201453 chr6 171115067 + 30393140 30396182 L1PA11 4918 + 1644 4517 19110 153 1 0 15 5 2 306 0 4 136 1 5 48 0 1 204 0 3 214 4 7 375 1 8 11 32 155 42 1 5 62 1 5 105 2 0 152 320 0 34 1 0 89 5 6 384 0 1 152 5 0 65 2 1 13 12 11 51 7 21 18 4 0 9 chain 508828 chr6 171115067 + 30398066 30404199 L1PA6 6164 + 0 6159 6256 112 23 9 77 3 4 307 2 1 418 0 25 222 4 13 501 1 0 643 1 2 776 3 0 79 0 1 435 0 1 77 3 1 975 8 7 771 9 10 17 0 1 512 13 14 77 0 7 64 chain 200667 chr6 171115067 + 30441642 30447332 L1PB1 5432 + 2253 5422 19162 183 2 3 11 3 2 46 1 2 320 2437 249 210 304 0 332 0 2 27 0 1 79 3 0 6 9 14 623 24 23 100 0 1 16 0 1 50 2 4 68 3 0 55 0 1 32 2 0 88 5 4 189 32 32 71 19 17 19 1 0 10 1 0 13 6 2 9 2 0 52 2 1 16 6 5 37 2 1 16 2 0 10 5 1 5 5 0 14 26 21 23 1 0 22 1 0 12 1 0 11 1 0 7 chain 138152 chr6 171115067 + 30442230 30443776 SVA_D 2077 + 0 2076 26463 31 0 6 575 1 0 184 0 40 80 5 396 71 0 94 599 chain 103143 chr6 171115067 + 30465936 30467110 SVA_B 1603 - 0 1416 35961 569 0 4 14 0 124 28 1 0 12 1 0 216 0 116 333 chain 35359 chr6 171115067 + 30482080 30482854 MER4A1 472 + 0 472 75720 99 1 3 29 0 1 45 307 2 293 chain 24970 chr6 171115067 + 30483510 30483816 AluSp 311 - 7 311 104954 42 4 1 221 0 1 39 chain 15658 chr6 171115067 + 30485796 30486348 LTR12D 1347 + 226 776 139405 38 138 320 109 202 18 65 chain 3617 chr6 171115067 + 30486081 30486122 LTR12D 1347 + 652 693 174172 41 chain 3878 chr6 171115067 + 30486122 30486173 LTR12D 1347 + 502 662 184553 22 0 109 29 chain 2014 chr6 171115067 + 30486348 30486372 LTR12D 1347 + 728 752 213513 24 chain 498601 chr6 171115067 + 30488597 30494749 L1PA6 6164 + 13 6162 6922 369 38 32 4 0 1 30 19 0 7 0 4 107 8 7 213 0 17 378 0 3 668 0 1 177 6 0 153 7 9 141 2 1 16 32 22 469 1 3 512 0 1 231 76 76 49 0 1 229 1 0 48 7 9 507 0 2 384 1 2 335 0 1 83 1 0 367 0 5 313 0 8 8 2 1 6 7 0 135 1 0 4 chain 8341 chr6 171115067 + 30507035 30507146 L1MA7 2200 + 1520 1630 169167 33 1 0 77 chain 20517 chr6 171115067 + 30557160 30557396 AluY 311 + 62 299 125578 70 0 1 166 chain 18085 chr6 171115067 + 30636598 30636812 AluSp 311 + 0 212 132628 8 2 0 204 chain 4745 chr6 171115067 + 30677094 30677153 L1MA7 2200 - 362 420 197968 9 1 0 49 chain 25257 chr6 171115067 + 30686095 30686388 AluSp 311 - 18 311 103433 293 chain 8638 chr6 171115067 + 30704082 30704191 HY1 111 - 0 111 167550 70 0 2 39 chain 19665 chr6 171115067 + 30712615 30712863 AluSc5 308 - 10 254 128211 20 10 6 218 chain 23964 chr6 171115067 + 30728635 30728927 AluSp 311 - 18 311 110544 137 5 6 150 chain 6439 chr6 171115067 + 30730187 30730303 MER39 703 - 96 213 181716 58 31 32 27 chain 85652 chr6 171115067 + 30732343 30733388 MER11C 1089 - 26 1082 41292 25 0 1 171 0 1 127 1 2 37 1 0 5 5 9 364 0 4 66 0 1 243 chain 105433 chr6 171115067 + 30774494 30775782 LTR12C 1709 - 0 1709 35388 167 0 102 66 2 1 145 0 4 107 2 0 6 1 319 792 chain 135823 chr6 171115067 + 30782991 30784637 LTR12C 1709 - 0 1709 26876 163 0 101 217 0 4 106 11 8 273 1 0 78 0 2 54 41 0 506 0 1 196 chain 1132 chr6 171115067 + 30783894 30783919 LTR12C 1709 - 847 872 127576 25 chain 2902 chr6 171115067 + 30808209 30808240 MER72B 755 - 23 54 227026 31 chain 10228 chr6 171115067 + 30810620 30810852 MER49 923 + 597 828 159478 53 23 25 5 2 0 75 53 52 21 chain 6615 chr6 171115067 + 30811120 30811370 MER61C 433 + 32 354 180344 8 2 0 25 21 111 13 0 1 5 19 15 23 62 64 12 14 0 6 1 0 39 chain 118424 chr6 171115067 + 30827070 30829019 THE1B-int 1605 - 11 1580 31639 58 0 10 603 0 17 149 0 9 8 0 1 64 16 17 135 446 0 56 10 35 316 0 3 88 chain 9039 chr6 171115067 + 30831399 30831615 MSTA 426 + 185 426 165381 20 10 0 8 50 55 27 11 31 82 0 10 8 chain 19529 chr6 171115067 + 30832026 30832270 7SK 245 + 0 245 128572 79 1 2 164 chain 57189 chr6 171115067 + 30835194 30835947 Tigger1 2417 - 827 1572 54414 120 0 1 177 2 0 12 2 0 228 4 0 201 1 0 6 chain 72555 chr6 171115067 + 30836584 30837653 MER11A 1151 + 0 1137 47240 77 0 8 116 0 3 26 0 4 60 0 11 11 37 0 164 17 20 32 0 12 138 6 9 11 3 4 37 0 4 69 6 33 13 0 32 97 8 7 87 1 0 27 1 0 25 chain 42604 chr6 171115067 + 30841652 30842528 MER41A 554 + 0 554 65894 317 326 0 90 1 5 142 chain 26163 chr6 171115067 + 30873297 30873606 AluSq10 312 - 5 312 99357 6 3 0 190 0 1 110 chain 3896 chr6 171115067 + 30896650 30896778 MLT1J 494 - 352 494 208910 42 71 85 15 chain 384017 chr6 171115067 + 30934157 30939201 HERVL-int 5654 + 885 5654 10642 301 4 14 126 12 13 385 0 2 149 0 3 150 319 3 110 0 4 420 0 1 349 0 3 511 8 7 27 0 2 6 3 1 197 9 10 132 4 5 23 15 18 432 18 23 112 6 7 29 0 2 89 0 3 670 0 1 105 0 1 323 chain 29234 chr6 171115067 + 30939201 30939610 MLT2A1 477 + 0 477 87888 146 0 1 21 5 2 9 0 1 24 0 1 54 0 28 97 19 59 34 chain 126964 chr6 171115067 + 30960358 30961771 SVA_D 2077 - 12 1918 28824 651 0 226 28 1 270 572 1 0 102 1 0 57 chain 108726 chr6 171115067 + 30968071 30969388 LTR12C 1709 + 0 1709 34499 188 14 0 72 1 26 364 0 278 184 1 0 5 3 1 106 0 4 168 0 102 211 chain 8886 chr6 171115067 + 30970338 30970478 LTR47B 464 - 325 464 166207 29 5 7 20 0 3 5 7 0 65 0 1 9 chain 33801 chr6 171115067 + 30979144 30979648 L1PB1 5432 - 140 638 77937 11 1 0 44 1 0 16 2 1 47 6 4 11 6 2 9 1 0 9 1 0 24 3 0 8 2 5 16 0 1 24 7 11 255 chain 5002 chr6 171115067 + 30985047 30985174 LTR12C 1709 + 932 1147 152626 113 0 88 14 chain 23484 chr6 171115067 + 30985180 30985488 LTR12C 1709 + 668 991 113200 169 1 0 72 3 18 4 0 1 59 chain 143510 chr6 171115067 + 30988316 30990025 LTR12C 1709 + 0 1709 25560 262 0 1 574 1 0 274 1 0 6 5 3 104 0 4 276 1 0 205 chain 14081 chr6 171115067 + 30999324 30999602 L1PB1 5432 - 20 274 144288 8 1 0 12 1 0 22 1 0 24 2 0 14 12 9 15 13 5 7 3 0 16 1 0 43 1 0 16 2 1 47 6 4 11 chain 23440 chr6 171115067 + 31021043 31021384 THE1A 353 + 0 353 113428 62 37 49 242 chain 127324 chr6 171115067 + 31034379 31035833 SVA_C 1631 - 2 1630 28735 15 4 0 439 0 1 156 1 0 16 1 0 13 0 174 774 0 5 35 chain 5411 chr6 171115067 + 31050816 31050880 U6 107 + 37 101 190881 64 chain 5606 chr6 171115067 + 31054326 31054408 LTR16A 446 - 253 334 189028 18 0 1 17 7 5 40 chain 15009 chr6 171115067 + 31065407 31065599 MER50 708 + 497 701 141293 49 0 9 55 2 0 5 0 5 81 chain 5534 chr6 171115067 + 31066548 31066617 L1MB8 1703 + 1273 1342 189718 69 chain 7057 chr6 171115067 + 31068247 31068333 L1MA2 4263 - 209 298 177050 9 0 3 77 chain 8834 chr6 171115067 + 31069491 31069604 L1M1 2793 - 1624 1737 166468 113 chain 4824 chr6 171115067 + 31134906 31134993 MER50B 698 + 483 568 197091 36 0 1 5 11 10 7 2 0 26 chain 22461 chr6 171115067 + 31136015 31136278 AluSp 311 - 11 278 118193 22 0 4 241 chain 205817 chr6 171115067 + 31150209 31152982 Harlequin-int 5206 - 1509 5071 18802 8 0 7 9 8 1 29 67 64 76 68 77 42 4 3 55 0 5 17 1 0 5 0 1 49 1 2 359 1 0 4 0 2 395 1 0 225 5 4 287 5 11 295 0 778 402 3 0 115 6 1 6 0 5 50 0 2 17 0 1 65 3 1 80 3 0 7 chain 10639 chr6 171115067 + 31156993 31157143 L1PA8 5853 - 0 149 157659 76 0 1 15 2 1 19 2 1 36 chain 131443 chr6 171115067 + 31163057 31164601 LTR12C 1709 + 1 1709 27766 690 0 159 65 0 2 195 1 0 5 7 5 102 0 4 117 0 2 362 chain 22053 chr6 171115067 + 31173126 31173395 AluSp 311 + 21 291 120008 184 1 2 84 chain 47450 chr6 171115067 + 31178937 31179553 LTR43 600 + 0 600 60867 294 16 0 306 chain 9697 chr6 171115067 + 31180521 31180658 L1MA8 2339 + 1725 1857 162094 28 1 0 88 4 0 16 chain 6749 chr6 171115067 + 31181982 31182065 L1MC 810 + 638 721 179329 83 chain 42471 chr6 171115067 + 31182883 31183436 MER41A 554 + 0 554 66046 42 0 15 7 16 1 332 1 0 4 0 1 59 0 1 92 chain 26842 chr6 171115067 + 31184063 31184570 LTR10B1 532 + 0 526 96839 40 2 0 19 16 8 12 3 0 60 11 59 28 43 33 11 31 27 12 1 0 176 1 0 41 chain 24407 chr6 171115067 + 31191020 31191455 MLT2A2 560 + 0 560 108044 178 2 0 15 29 34 75 2 111 45 0 5 9 57 65 23 chain 8985 chr6 171115067 + 31199761 31199875 MER9a3 513 - 0 115 165688 75 3 4 36 chain 169500 chr6 171115067 + 31199888 31202005 HERVK9-int 4720 - 929 4666 22115 282 0 1 172 41 685 22 0 1 208 1 925 102 0 55 327 7 6 479 0 1 363 2 0 30 2 1 7 1 0 66 1 0 4 chain 44433 chr6 171115067 + 31203363 31203873 MER9a3 513 - 4 513 63656 253 1 0 256 chain 2828 chr6 171115067 + 31211650 31211687 SVA_F 1814 + 966 1002 89839 35 1 0 1 chain 92248 chr6 171115067 + 31211687 31213099 SVA_F 1814 + 642 1814 38891 4 0 1 13 5 4 72 0 119 96 0 15 123 372 0 87 1 0 5 1 0 633 chain 2063 chr6 171115067 + 31212000 31212027 SVA_F 1814 + 1265 1291 89839 9 1 0 17 chain 19889 chr6 171115067 + 31212093 31212305 SVA_F 1814 + 1006 1219 127520 208 0 1 4 chain 3288 chr6 171115067 + 31212305 31212354 SVA_F 1814 + 993 1043 134223 45 0 1 4 chain 3162 chr6 171115067 + 31221207 31221245 MER21-int 1364 + 940 978 221717 38 chain 523255 chr6 171115067 + 31221939 31228409 L1PA6 6164 - 2 6164 4843 362 328 0 81 0 3 18 0 6 740 0 1 1255 2 0 506 0 1 864 0 2 320 0 1 1055 3 10 427 2 1 46 0 1 266 0 1 195 chain 67965 chr6 171115067 + 31230958 31231994 MER11A 1151 - 0 1151 49259 153 21 22 55 22 24 13 18 0 22 2 35 137 5 6 115 0 1 12 0 1 6 7 6 4 0 1 85 1 0 9 13 14 102 0 2 19 0 6 7 4 0 66 1 0 50 8 0 24 0 99 55 chain 52766 chr6 171115067 + 31247202 31247905 L1PA8A 6298 + 5574 6290 57154 238 2 14 124 0 1 24 1 2 205 3 1 8 3 4 4 1 0 46 3 4 41 chain 2948 chr6 171115067 + 31250509 31250577 L1PREC2 3366 + 1229 1299 226103 18 1 2 18 15 16 16 chain 39158 chr6 171115067 + 31266889 31267412 L1PA8 5853 - 6 523 70535 87 1 0 19 2 1 45 21 20 66 2 0 45 1 0 234 chain 16325 chr6 171115067 + 31270399 31270659 L1PB2 3958 - 155 423 137419 27 2 1 22 2 0 74 8 7 55 1 0 11 3 0 13 2 19 34 1 0 5 chain 8802 chr6 171115067 + 31294102 31294228 L1PA13 3608 + 3328 3448 166635 7 1 0 56 1 0 5 2 0 45 2 0 7 chain 44124 chr6 171115067 + 31306532 31307044 MER9a3 513 - 0 513 64048 156 4 5 352 chain 98419 chr6 171115067 + 31310205 31311334 L1PA5 6144 + 5011 6142 37186 942 0 2 187 chain 61261 chr6 171115067 + 31328234 31329045 L1PA8A 6298 + 5455 6289 52225 34 10 12 10 0 1 34 1 18 9 1 0 483 1 4 185 3 4 40 chain 4786 chr6 171115067 + 31340940 31341044 L1MB5 1630 + 1275 1383 197504 15 19 20 41 6 9 23 chain 85735 chr6 171115067 + 31341445 31342426 LTR13 1007 - 0 1007 41251 559 3 29 419 chain 45806 chr6 171115067 + 31358073 31358638 MER61E 571 - 0 571 62226 35 12 5 433 0 13 85 chain 23818 chr6 171115067 + 31368128 31368415 AluSp 311 + 0 287 111374 57 0 1 215 1 0 14 chain 8004 chr6 171115067 + 31369929 31370027 HY3 101 - 0 101 171023 82 0 3 16 chain 29238 chr6 171115067 + 31392992 31393413 L1PA6 6164 - 2 421 87857 144 9 2 189 0 1 19 9 13 10 9 13 8 4 0 20 chain 25647 chr6 171115067 + 31394694 31395035 MLT2A1 477 + 0 342 101511 4 1 0 28 1 0 110 0 1 24 6 10 27 2 0 138 chain 452429 chr6 171115067 + 31397662 31403327 HERVL-int 5654 + 0 5654 8674 203 0 4 23 0 3 13 5 3 5 0 3 154 2 0 238 1 0 425 0 1 354 0 1 426 0 1 71 19 20 169 67 7 143 0 3 176 3 0 417 0 1 328 0 1 565 0 12 181 0 4 82 0 4 230 5 6 30 0 2 115 1 2 136 0 3 191 0 6 463 6 5 146 2 1 53 0 1 76 1 6 49 4 5 87 chain 32746 chr6 171115067 + 31403327 31403781 MLT2A1 477 + 0 477 79619 142 0 1 26 1 5 30 2 0 194 20 40 39 chain 123478 chr6 171115067 + 31403805 31405567 L1PBa 3878 - 453 2262 29888 129 9 10 65 3 0 18 0 17 28 39 43 65 1 2 14 10 8 34 0 2 25 0 1 29 13 7 48 0 12 42 20 25 38 2 4 38 1 0 4 6 15 193 0 1 141 0 1 239 0 4 207 6 0 83 0 4 46 3 4 163 chain 96229 chr6 171115067 + 31415033 31416092 L1PA3long 6157 - 5 1067 37756 713 0 1 326 0 2 20 chain 180848 chr6 171115067 + 31421528 31424330 SVA_D 2077 - 4 2071 20915 216 1 0 434 32 0 112 304 0 120 49 0 126 222 0 31 30 0 76 55 15 25 50 0 15 2 0 866 1 0 9 1 0 6 1 0 6 1 0 6 1 0 4 chain 2084 chr6 171115067 + 31422181 31422211 SVA_D 2077 - 722 957 127132 20 0 205 10 chain 10872 chr6 171115067 + 31422344 31422545 SVA_D 2077 - 689 893 70970 172 0 3 29 chain 2142 chr6 171115067 + 31422603 31422626 SVA_D 2077 - 595 618 237252 23 chain 7572 chr6 171115067 + 31422922 31423062 SVA_D 2077 - 1063 1276 70970 46 1 39 12 3 1 8 2 0 30 8 47 30 chain 1473 chr6 171115067 + 31423062 31423105 SVA_D 2077 - 927 970 117856 43 chain 2795 chr6 171115067 + 31423281 31423336 SVA_D 2077 - 765 820 117975 55 chain 2236 chr6 171115067 + 31423361 31423405 SVA_D 2077 - 845 889 117975 44 chain 18107 chr6 171115067 + 31435492 31435827 THE1B 368 + 9 368 132577 35 1 16 114 74 79 53 0 3 46 2 3 10 chain 12486 chr6 171115067 + 31442337 31442490 MLT2A2 560 - 6 159 150316 153 chain 24669 chr6 171115067 + 31443363 31443690 THE1A 353 - 12 353 106617 26 0 7 165 6 14 27 1 0 102 chain 46162 chr6 171115067 + 31454988 31455553 MER61E 571 - 0 571 61887 35 12 5 436 0 13 82 chain 25700 chr6 171115067 + 31462327 31462627 AluSp 311 + 1 304 101288 140 0 3 160 chain 8400 chr6 171115067 + 31464466 31464567 HY3 101 - 0 101 168852 101 chain 25044 chr6 171115067 + 31477870 31478252 LTR3A 482 + 27 420 104575 125 14 19 108 7 8 20 5 6 67 5 7 16 0 2 15 chain 18408 chr6 171115067 + 31489905 31490264 L1MA8 2339 + 1847 2188 131754 85 5 1 25 4 5 46 1 0 36 1 6 18 70 50 38 2 3 28 chain 22944 chr6 171115067 + 31518454 31518756 AluSp 311 - 0 305 115888 202 0 2 47 12 13 41 chain 7882 chr6 171115067 + 31561733 31561834 Tigger1 2417 - 940 1041 171800 101 chain 17212 chr6 171115067 + 31564179 31564427 AluSp 311 + 21 276 135007 175 29 36 44 chain 6412 chr6 171115067 + 31573825 31573904 LTR26E 604 + 19 98 181933 79 chain 21455 chr6 171115067 + 31621779 31622041 AluSg7 307 + 38 299 122313 93 0 1 67 1 0 76 2 1 23 chain 24787 chr6 171115067 + 31713891 31714173 AluSq10 312 - 30 312 105961 282 chain 11268 chr6 171115067 + 31739113 31739256 LTR7B 505 + 0 164 155164 108 0 10 21 0 11 14 chain 24374 chr6 171115067 + 31740361 31740671 AluSp 311 - 1 307 108231 29 14 12 39 2 0 226 chain 7246 chr6 171115067 + 31746601 31746682 HY3 101 - 20 101 175792 81 chain 8760 chr6 171115067 + 31757437 31757972 MER30 238 - 0 184 166866 37 1 5 28 348 0 42 4 0 7 17 36 19 22 0 10 chain 21047 chr6 171115067 + 31761051 31761300 AluY 311 + 53 300 123740 80 3 1 166 chain 21859 chr6 171115067 + 31792691 31792988 AluSp 311 - 19 300 120784 164 17 0 70 7 8 39 chain 23509 chr6 171115067 + 31810259 31810528 AluY 311 + 13 284 113073 118 0 2 151 chain 3085 chr6 171115067 + 31820451 31820486 LTR12C 1709 + 683 718 223195 35 chain 165518 chr6 171115067 + 31821054 31823124 SVA_F 1814 - 0 1805 22586 10 2 0 620 1 0 7 1 0 189 177 0 26 0 15 32 98 0 699 1 0 207 chain 7870 chr6 171115067 + 31821884 31821983 SVA_F 1814 - 650 826 136623 45 8 86 21 2 1 23 chain 2714 chr6 171115067 + 31822000 31822061 SVA_F 1814 - 540 601 124532 61 chain 2803 chr6 171115067 + 31822119 31822182 SVA_F 1814 - 659 722 124532 63 chain 9226 chr6 171115067 + 31861450 31861678 L1MB3 1562 + 1260 1465 164417 17 0 2 72 1 0 16 86 64 7 2 0 27 chain 3468 chr6 171115067 + 31862750 31862790 MER44B 551 + 384 424 215843 40 chain 4065 chr6 171115067 + 31863180 31863229 MER66C 541 - 122 171 206414 49 chain 5414 chr6 171115067 + 31882009 31882087 MLT2C2 476 + 182 263 190858 28 3 6 47 chain 167086 chr6 171115067 + 31899039 31900930 SVA_D 2077 - 0 2075 22386 18 2 0 658 9 8 4 0 1 260 0 100 74 0 36 15 2 0 153 0 40 673 0 6 9 1 7 13 chain 24562 chr6 171115067 + 31906435 31906729 AluSp 311 - 11 311 107184 118 0 6 176 chain 110864 chr6 171115067 + 31943432 31944815 SVA_D 2077 - 375 2020 33980 160 0 225 194 51 0 30 0 1 7 0 51 86 45 5 26 3 1 13 2 0 37 0 40 177 0 40 552 chain 2089 chr6 171115067 + 31943960 31944005 SVA_D 2077 - 775 820 116603 45 chain 45301 chr6 171115067 + 31952468 31953018 LTR14 556 - 0 556 62717 91 1 0 264 1 8 193 chain 47172 chr6 171115067 + 31958281 31958829 LTR14 556 - 0 556 61071 91 1 0 326 2 0 19 0 11 109 chain 45301 chr6 171115067 + 31985206 31985756 LTR14 556 - 0 556 62716 91 1 0 264 1 8 193 chain 47172 chr6 171115067 + 31991019 31991567 LTR14 556 - 0 556 61070 91 1 0 326 2 0 19 0 11 109 chain 21691 chr6 171115067 + 32040487 32040744 AluSq2 311 + 43 300 121430 257 chain 23292 chr6 171115067 + 32042463 32042736 AluSp 311 - 18 291 114242 273 chain 5911 chr6 171115067 + 32046312 32046404 5S 121 - 31 120 186078 59 11 8 22 chain 26002 chr6 171115067 + 32058886 32059176 AluSp 311 - 11 301 100005 290 chain 6997 chr6 171115067 + 32059908 32060075 MER5A 189 - 23 189 177483 27 67 66 73 chain 17948 chr6 171115067 + 32082231 32082452 AluSx4 309 + 10 258 132986 40 6 33 175 chain 3962 chr6 171115067 + 32107698 32107807 PABL_B 668 - 34 142 207963 44 48 47 17 chain 5497 chr6 171115067 + 32175044 32175108 L1MA3 4352 + 2970 3034 190064 64 chain 29090 chr6 171115067 + 32196389 32196696 AluYb8 318 + 0 307 88592 307 chain 388203 chr6 171115067 + 32224888 32229530 L1PA7 6471 - 1 4678 10511 458 0 2 300 1 0 82 0 8 17 0 4 244 1 0 5 0 1 5 2 15 6 13 0 374 1 0 277 0 4 839 7 5 271 0 4 47 1 0 588 0 4 75 1 13 181 0 1 174 0 1 672 chain 101592 chr6 171115067 + 32231902 32233042 L1PA4 6152 - 0 1146 36370 6 0 5 908 1 2 225 chain 46221 chr6 171115067 + 32233042 32233549 L1PA4 6152 + 4487 5013 61685 313 0 19 194 chain 280200 chr6 171115067 + 32238699 32242959 L1PB1 5432 + 1743 5427 14632 679 0 4 73 0 1 8 0 5 64 0 5 248 0 4 8 3 0 157 9 1 7 5 0 187 0 2 232 1 6 51 0 1 6 0 1 121 0 1 4 2 1 86 1 0 17 26 8 699 0 1 46 27 32 115 3 0 158 564 16 287 20 21 9 3 0 23 1 0 9 1 0 9 9 5 7 2 0 9 0 3 40 2 1 16 1 0 42 0 8 9 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 4 3 10 1 0 14 1 0 5 1 0 4 chain 23597 chr6 171115067 + 32244765 32245140 MSTA 426 + 0 426 112597 104 26 54 78 32 29 33 0 26 102 chain 4437 chr6 171115067 + 32245140 32245191 MSTA-int 1630 + 0 51 201502 51 chain 392942 chr6 171115067 + 32247320 32252585 L1PA8 5853 + 50 5853 10364 15 8 6 11 1 0 13 52 13 60 0 3 134 0 4 153 0 1 166 307 0 25 8 5 20 0 1 337 1 0 128 0 1 871 2 1 62 0 1 160 0 863 105 8 6 518 0 3 300 0 1 20 0 2 23 0 6 282 1 0 317 9 17 85 3 0 99 2 1 95 0 1 108 0 1 397 0 10 59 3 2 46 2 0 54 1 0 5 5 6 6 1 0 9 9 8 44 2 1 19 4 3 90 chain 26271 chr6 171115067 + 32263615 32263910 AluSp 311 - 6 301 98929 295 chain 45832 chr6 171115067 + 32272764 32273359 PABL_A 660 + 0 620 62193 96 0 15 13 0 2 14 0 1 78 1 0 60 3 0 14 2 13 314 chain 27079 chr6 171115067 + 32276109 32276393 AluYa5 310 + 16 300 96005 284 chain 33180 chr6 171115067 + 32299220 32299671 LTR46 455 + 0 455 78937 30 9 10 147 1 5 116 1 0 96 1 0 14 0 1 36 chain 3316 chr6 171115067 + 32301169 32301205 LTR87 602 - 205 241 218655 36 chain 14856 chr6 171115067 + 32311885 32312048 L1PA3long 6157 - 0 163 141770 163 chain 29004 chr6 171115067 + 32313780 32314091 AluYb8 318 - 8 318 88967 178 1 0 132 chain 5223 chr6 171115067 + 32320664 32320728 U6 107 + 11 75 192796 64 chain 102112 chr6 171115067 + 32326202 32327594 L1PA5 6144 - 9 1170 36234 482 235 4 675 chain 19091 chr6 171115067 + 32326712 32326919 L1PA3long 6157 - 15 222 129843 207 chain 69087 chr6 171115067 + 32328660 32329473 L1PA5 6144 - 2 818 48770 143 4 3 6 0 1 507 0 3 153 chain 11565 chr6 171115067 + 32330121 32330306 MSTC 436 + 248 423 154043 63 23 19 37 6 0 56 chain 87104 chr6 171115067 + 32342089 32343382 HUERS-P2-int 2744 + 1558 2738 40735 358 4 5 340 20 0 107 1 2 4 1 0 66 1 0 48 5 4 20 76 1 31 3 0 37 2 1 10 1 0 5 6 4 15 1 0 39 3 0 12 4 5 17 1 0 9 2 0 5 2 0 11 2 0 24 chain 63570 chr6 171115067 + 32343391 32344227 LTR1 825 + 0 825 51206 280 46 36 459 14 13 37 chain 160269 chr6 171115067 + 32351966 32353881 SVA_D 2077 - 0 2077 23298 350 0 3 285 1 51 207 0 1 8 9 37 4 0 1 92 2 4 86 45 5 26 2 1 13 2 0 12 0 40 86 0 40 632 0 42 14 5 0 17 0 3 17 chain 3122 chr6 171115067 + 32353010 32353055 SVA_D 2077 - 775 820 91915 45 chain 18708 chr6 171115067 + 32356507 32356728 L1PA6 6164 - 2 225 130923 9 0 2 212 chain 37703 chr6 171115067 + 32378247 32378645 L1HS 6032 + 5633 6031 72549 398 chain 31814 chr6 171115067 + 32383995 32384441 MER41B 635 - 187 635 81139 70 18 19 23 5 6 201 0 1 35 1 0 93 chain 48162 chr6 171115067 + 32389697 32390251 L1P3 4156 - 939 1497 60350 116 0 4 438 chain 33136 chr6 171115067 + 32390251 32390674 L1P1 4361 - 1007 1428 78615 73 0 1 59 0 5 12 13 1 118 1 5 147 chain 7669 chr6 171115067 + 32396690 32396782 MER6A 605 - 4 96 173110 92 chain 27991 chr6 171115067 + 32401896 32402284 L1PA8 5853 + 5451 5853 93027 113 1 0 44 6 4 49 0 20 6 3 1 22 0 1 22 11 10 17 1 0 93 chain 26340 chr6 171115067 + 32414425 32414742 AluY 311 + 0 311 98653 123 9 4 163 1 0 21 chain 45399 chr6 171115067 + 32420209 32420798 THE1B-int 1605 + 13 630 62597 255 0 2 160 1 26 104 5 6 64 chain 20393 chr6 171115067 + 32422071 32422389 THE1B 368 + 0 328 125916 107 2 3 59 2 1 22 41 51 85 chain 32395 chr6 171115067 + 32425307 32425903 L1PA15 4387 + 3749 4326 80202 64 52 42 36 3 1 40 1 0 107 0 1 60 6 11 14 6 5 55 1 0 21 4 0 9 1 0 41 34 31 27 3 1 11 chain 58626 chr6 171115067 + 32425912 32426745 LTR12 884 - 0 884 53626 201 103 0 296 0 113 156 0 41 77 chain 74631 chr6 171115067 + 32433281 32434320 MER11C 1089 - 26 1089 46194 25 0 1 64 0 8 45 1 0 54 0 1 127 0 1 38 1 0 4 1 5 75 53 52 177 1 0 60 5 9 58 8 17 242 chain 277748 chr6 171115067 + 32435379 32438533 L1PA5 6144 - 0 3160 14761 11 1 3 67 0 1 1717 0 4 666 3 0 171 0 2 205 0 1 120 1 0 192 chain 42952 chr6 171115067 + 32461305 32461880 LTR12 884 + 0 621 65475 65 0 40 129 19 23 79 1 2 38 2 0 86 3 5 22 0 1 131 chain 242332 chr6 171115067 + 32461942 32466402 HERV9-int 5642 + 0 4824 16655 174 1366 0 93 0 1 329 11 9 107 0 4 67 8 7 294 80 0 16 7 5 426 0 1 46 2 3 57 0 1 178 2 1 714 0 1 261 3 13 32 0 1795 177 0 2 10 chain 4644 chr6 171115067 + 32462120 32462170 LTR12D 1347 - 0 50 199134 50 chain 30242 chr6 171115067 + 32468363 32468775 LTR12_ 688 + 0 673 84081 78 1 42 18 24 8 219 0 236 72 chain 22974 chr6 171115067 + 32475176 32475480 L1PA6 6164 - 2 317 115738 145 16 15 22 1 0 50 0 13 70 chain 221583 chr6 171115067 + 32475480 32478057 L1PA6 6164 + 3578 6162 17778 1119 0 2 704 12 17 742 chain 8588 chr6 171115067 + 32478240 32478348 L1PA5 6144 + 6031 6140 167799 81 0 1 27 chain 47413 chr6 171115067 + 32480606 32481162 LTR14 556 + 0 556 60891 556 chain 117811 chr6 171115067 + 32499323 32500773 SVA_B 1603 + 0 1596 31860 24 1 25 645 78 77 53 0 124 225 0 1 299 1 2 5 1 0 110 2 0 6 chain 4735 chr6 171115067 + 32500015 32500071 SVA_B 1603 + 483 538 198108 29 1 0 26 chain 57897 chr6 171115067 + 32506916 32507630 LTR12 884 + 0 869 54038 82 0 66 116 0 91 23 3 1 490 chain 106185 chr6 171115067 + 32514915 32516263 LTR12C 1709 - 0 1709 35213 188 14 0 99 1 3 43 0 2 146 0 4 28 0 366 516 1 0 4 0 1 68 1 0 26 1 3 212 chain 6111 chr6 171115067 + 32547476 32547977 LTR12 884 - 483 884 184335 24 5 3 16 49 229 15 336 58 56 chain 147803 chr6 171115067 + 32561970 32564558 SVA_F 1814 - 0 1809 24903 326 0 15 286 1 0 10 2 0 147 962 0 68 0 15 55 1 0 11 0 1 287 0 156 432 chain 8751 chr6 171115067 + 32562768 32563341 SVA_F 1814 - 809 939 126603 4 2 0 39 456 14 67 0 1 5 chain 12695 chr6 171115067 + 32562813 32562945 SVA_F 1814 - 676 808 137080 132 chain 10361 chr6 171115067 + 32562979 32563269 SVA_F 1814 - 791 964 143940 61 0 15 49 131 0 43 1 0 5 chain 1599 chr6 171115067 + 32563114 32563208 SVA_F 1814 - 698 792 161240 94 chain 23957 chr6 171115067 + 32563341 32563594 SVA_F 1814 - 600 852 110580 44 1 0 208 chain 1222 chr6 171115067 + 32563594 32563674 SVA_F 1814 - 1085 1164 126603 65 5 4 10 chain 54730 chr6 171115067 + 32584206 32584913 LTR30 714 + 0 704 55881 12 0 1 201 2 1 28 1 2 9 1 0 94 1 0 183 16 15 146 1 0 12 chain 29802 chr6 171115067 + 32585125 32585464 L1PA4 6152 - 0 339 85427 339 chain 9875 chr6 171115067 + 32592427 32592533 L1PA2 6032 - 3 109 161195 106 chain 9744 chr6 171115067 + 32598819 32598990 L1PA13 3608 - 128 321 161874 12 1 0 20 2 0 4 2 0 42 15 45 21 1 0 6 3 1 42 chain 5766 chr6 171115067 + 32610162 32610234 MER51A 677 - 73 145 187475 72 chain 213409 chr6 171115067 + 32616050 32618621 L1PA6 6164 + 3645 6149 18259 58 1 0 997 55 1 613 0 1 5 10 0 5 1 0 72 0 1 212 10 7 532 chain 16874 chr6 171115067 + 32621441 32621715 L1MA7 2200 + 1672 1949 135905 47 1 0 65 1 3 43 1 0 6 32 35 78 chain 81085 chr6 171115067 + 32623550 32624592 MER11C 1089 - 30 1089 43150 139 1 0 56 30 31 95 0 1 38 1 0 4 1 5 369 0 4 62 0 9 246 chain 78096 chr6 171115067 + 32624902 32625860 LTR5_Hs 974 - 0 974 44465 191 7 7 120 1 2 191 0 4 263 7 18 178 chain 28336 chr6 171115067 + 32639513 32639856 THE1A 353 + 0 342 91814 110 1 0 232 chain 128946 chr6 171115067 + 32639867 32641778 THE1A-int 1579 + 0 1574 28323 15 0 2 49 0 1 435 0 1 73 0 1 691 341 0 301 1 0 5 chain 29354 chr6 171115067 + 32641786 32642137 THE1A 353 + 3 353 87272 107 1 0 243 chain 272675 chr6 171115067 + 32643056 32647238 L1PA10 4194 - 44 3942 15034 21 3 0 11 6 8 32 1 0 187 12 12 26 1 4 114 0 2 27 0 1 29 1 0 502 13 11 204 2 0 23 0 1 48 0 3 39 0 8 8 1 0 205 0 1 11 3 2 501 1 2 61 254 0 78 18 18 38 15 16 137 2 0 719 6 26 24 9 10 44 1 0 56 1 0 172 9 1 197 264 216 8 1 0 15 2 0 19 chain 21134 chr6 171115067 + 32645168 32645403 L1PA4 6152 - 1 235 123432 150 1 0 84 chain 18064 chr6 171115067 + 32658768 32658980 L1PA5 6144 - 7 217 132688 165 3 1 44 chain 165475 chr6 171115067 + 32660129 32662762 L1MA1 4479 + 1697 4190 22594 255 1 0 5 11 14 22 0 1 26 1 2 5 1 0 54 0 6 75 4 0 118 1 2 102 2 6 34 9 10 93 27 0 75 5 8 48 11 10 79 11 15 9 3 1 14 0 1 8 10 9 21 1 0 133 1 0 27 2 0 9 0 1 165 2 0 46 6 7 38 1 0 12 5 0 53 5 0 26 0 20 11 121 14 6 7 0 135 0 1 16 0 2 59 0 1 108 0 1 4 2 0 19 2 0 16 1 0 74 1 0 17 2 0 13 1 0 88 9 5 89 0 1 36 1 0 29 2 0 44 1 0 11 23 15 13 chain 30887 chr6 171115067 + 32666035 32666507 MLT2A2 560 + 1 560 82706 5 1 0 118 1 0 45 12 11 12 50 129 81 0 11 147 chain 24961 chr6 171115067 + 32667401 32667690 AluY 311 + 0 287 104997 126 4 0 105 2 4 52 chain 29852 chr6 171115067 + 32673042 32673509 L1PA8 5853 + 5422 5853 85270 142 1 0 44 2 0 37 38 8 29 27 25 12 0 1 20 2 1 22 1 0 90 chain 16535 chr6 171115067 + 32673698 32673889 AluSp 311 - 111 301 136822 22 1 0 168 chain 32997 chr6 171115067 + 32676679 32677032 L1HS 6032 - 0 353 79218 353 chain 41441 chr6 171115067 + 32683301 32683839 LTR19B 566 - 10 548 67357 20 5 2 19 8 9 30 1 0 45 1 2 110 2 1 96 0 3 201 chain 3929 chr6 171115067 + 32701554 32701599 L1P1 4361 - 96 141 199319 45 chain 44099 chr6 171115067 + 32701599 32702131 L1PA7 6471 + 5759 6292 64087 83 5 6 444 chain 15150 chr6 171115067 + 32702133 32702336 L1M1 2793 + 1889 2099 140911 121 0 4 57 4 7 21 chain 4951 chr6 171115067 + 32726335 32726394 MSTB 430 + 350 409 195690 59 chain 41021 chr6 171115067 + 32738343 32739238 PRIMA4_LTR 623 - 0 623 67871 18 1 6 105 0 1 12 2 1 117 349 76 99 4 0 96 1 0 62 0 1 29 chain 40692 chr6 171115067 + 32743361 32743876 MER9a1 513 + 0 513 68308 46 25 0 198 1 23 30 0 1 215 chain 78212 chr6 171115067 + 32745844 32746812 LTR5_Hs 974 - 0 974 44412 103 8 6 34 0 1 2 0 6 354 0 1 181 0 1 118 1 0 167 chain 27793 chr6 171115067 + 32749232 32749541 AluYg6 310 - 2 310 93723 182 1 0 126 chain 57478 chr6 171115067 + 32750155 32750994 L1PA13 3608 + 218 1029 54254 73 2 0 115 34 32 7 2 0 14 27 9 12 2 1 19 3 1 15 2 0 11 6 5 8 0 1 88 2 1 365 0 2 32 chain 85984 chr6 171115067 + 32755311 32756478 L1PA11 4918 + 3401 4578 41161 257 3 2 36 1 0 563 0 1 50 0 4 18 0 4 59 6 5 7 2 0 68 2 0 12 5 4 17 4 0 11 6 22 13 1 0 13 2 0 11 chain 236799 chr6 171115067 + 32770915 32774273 L1PA13 3608 - 216 3522 16939 50 10 9 26 0 1 33 2 0 76 1 0 4 0 1 33 1 0 28 1 0 297 3 5 7 2 0 363 1 0 209 31 14 83 0 1 53 0 1 98 1 0 95 2 3 22 12 11 43 10 11 311 0 2 98 1 2 8 1 0 13 1 0 185 28 28 9 0 1 179 10 8 75 1 2 151 0 2 62 2 1 48 2 0 45 1 2 26 0 1 23 1 0 17 2 0 15 8 6 13 1 0 23 1 0 14 2 0 17 1 0 10 1 0 127 2 0 71 30 19 24 3 0 14 1 0 10 49 44 19 1 0 4 chain 11695 chr6 171115067 + 32837344 32837542 AluJr4 308 + 41 241 153497 7 0 1 41 1 0 28 44 46 77 chain 5911 chr6 171115067 + 32867137 32867477 Charlie2b 853 - 504 841 186084 39 223 227 29 16 9 33 chain 51690 chr6 171115067 + 32885700 32886399 L1PA13 3608 - 241 935 57823 5 0 1 19 7 6 63 2 0 112 2 1 32 1 0 54 1 0 172 3 4 177 1 0 48 chain 5540 chr6 171115067 + 32904703 32904777 MADE1 96 - 6 96 189660 29 3 19 42 chain 27308 chr6 171115067 + 32910067 32910499 L1PA15 4387 - 74 494 95252 43 9 6 47 15 10 22 5 4 51 2 1 24 2 1 172 1 0 39 chain 5358 chr6 171115067 + 32932166 32932294 MSTD 398 + 0 132 191452 15 53 57 60 chain 10546 chr6 171115067 + 32946287 32946506 MER1B 344 - 5 227 158062 44 1 0 10 13 19 8 1 0 32 45 44 65 chain 17826 chr6 171115067 + 32949520 32949766 AluYc 301 + 20 281 133310 81 4 13 91 4 6 38 8 12 20 chain 23699 chr6 171115067 + 32958099 32958380 AluSp 311 + 0 300 112036 52 1 20 228 chain 26441 chr6 171115067 + 32995359 32995655 AluYc 301 - 2 300 98264 183 0 2 113 chain 74938 chr6 171115067 + 33011519 33012326 L1PA3long 6157 - 0 807 46044 807 chain 43401 chr6 171115067 + 33014518 33015057 THE1B-int 1605 + 0 587 64937 162 0 21 249 0 25 8 0 2 120 chain 256782 chr6 171115067 + 33019806 33024295 HERVK22-int 3844 + 15 3815 15893 23 3 0 194 0 1 289 0 1 45 1 4 107 4 5 16 2 0 372 4 1 113 9 1 341 0 1 30 0 4 9 26 22 369 0 4 82 1 0 330 9 7 276 0 1 334 1 2 49 1 0 66 5 4 6 1 0 16 6 5 33 1 0 20 2 0 39 26 21 34 159 119 19 10 7 7 0 1 20 826 198 86 18 17 49 chain 10645 chr6 171115067 + 33024295 33024429 HERVK22-int 3844 - 1799 1937 156649 78 0 4 56 chain 159909 chr6 171115067 + 33026722 33028574 SVA_D 2077 - 4 2070 23351 10 10 0 674 0 1 13 0 49 69 49 0 171 0 183 138 0 40 718 chain 4089 chr6 171115067 + 33027498 33027547 SVA_D 2077 - 947 996 121400 49 chain 24346 chr6 171115067 + 33031233 33031594 L1PA8 5853 - 0 357 108389 69 0 1 23 1 0 18 7 6 66 2 0 59 3 1 46 1 0 41 0 2 25 chain 49985 chr6 171115067 + 33044711 33045278 L1PA5 6144 - 13 581 59024 358 2 3 207 chain 12071 chr6 171115067 + 33045278 33045409 L1PA5 6144 + 5430 5561 151895 131 chain 13954 chr6 171115067 + 33071071 33071409 L1PB1 5432 + 5117 5426 144738 19 1 0 10 36 32 41 1 0 17 1 0 39 6 5 16 25 13 17 25 20 24 1 0 23 1 0 11 1 0 18 1 0 4 chain 3204 chr6 171115067 + 33074119 33074159 MIRb 242 - 126 166 220873 40 chain 93914 chr6 171115067 + 33077802 33079127 L1PB1 5432 - 19 1357 38377 9 1 0 13 1 0 21 1 0 24 2 0 8 29 43 15 1 0 43 1 0 12 0 2 56 2 0 9 6 2 10 2 1 11 1 0 20 1 0 9 1 2 51 1 0 7 0 2 202 30 29 14 0 1 87 0 2 87 2 0 68 0 10 323 0 1 144 chain 30314 chr6 171115067 + 33093424 33093742 AluYb8 318 + 0 318 83873 318 chain 162743 chr6 171115067 + 33100595 33102979 MER57-int 2662 - 158 2405 22974 10 2 0 55 21 15 46 15 6 38 2 1 148 1 2 207 19 23 39 12 9 64 22 5 71 0 1 58 1 0 77 6 7 156 4 0 67 9 7 191 15 16 89 4 0 281 2 0 124 6 30 211 121 5 125 11 9 54 chain 24788 chr6 171115067 + 33104705 33104999 AluYf4 310 - 7 302 105956 83 13 14 198 chain 88484 chr6 171115067 + 33119620 33120726 MER11A 1151 - 0 1151 40191 66 1 0 192 1 33 175 0 1 116 1 0 9 17 16 99 4 5 50 0 1 83 0 11 176 11 13 105 chain 7851 chr6 171115067 + 33167377 33167467 HY4 93 + 0 90 171985 90 chain 5586 chr6 171115067 + 33182558 33182619 MER5A 189 + 30 91 189216 61 chain 21953 chr6 171115067 + 33200891 33201168 AluSp 311 - 10 285 120409 8 2 0 267 chain 5744 chr6 171115067 + 33205371 33205441 MSTA 426 + 356 426 187694 70 chain 16492 chr6 171115067 + 33229263 33229536 L1MA1 4479 + 3773 4041 136952 12 0 1 28 4 3 9 1 0 20 16 13 5 0 1 29 0 2 48 3 2 6 3 0 89 chain 22429 chr6 171115067 + 33279127 33279411 AluSp 311 + 3 287 118341 44 0 1 181 2 1 57 chain 24887 chr6 171115067 + 33293345 33293650 AluY 311 + 9 298 105424 117 15 0 33 1 0 139 chain 136953 chr6 171115067 + 33313686 33315466 HERVH-int 3825 + 1637 3825 26650 49 3 30 65 20 5 304 1 6 32 1 4 360 30 31 296 0 367 57 11 22 132 0 1 115 0 8 304 chain 28413 chr6 171115067 + 33319193 33319580 LTR7B 505 + 0 505 91522 105 0 10 56 12 81 37 2 1 21 1 42 88 2 1 63 chain 169131 chr6 171115067 + 33319666 33323018 Harlequin-int 5206 - 2742 4855 22159 128 2 1 58 5 6 95 0 2 100 0 1 137 2 0 154 7 9 917 2 0 96 300 0 77 635 11 189 316 0 132 chain 23372 chr6 171115067 + 33323027 33323363 LTR14B 630 + 228 628 113807 46 7 53 17 7 18 85 0 4 89 0 3 85 chain 33899 chr6 171115067 + 33323543 33324016 LTR10F 562 - 0 562 77775 87 2 0 198 5 11 12 13 65 54 1 29 65 0 5 36 chain 54835 chr6 171115067 + 33325175 33325795 SVA_A 1864 - 0 626 55812 207 0 3 392 1 4 20 chain 22886 chr6 171115067 + 33337205 33337475 AluSc 308 + 9 284 116157 31 0 5 239 chain 12609 chr6 171115067 + 33343299 33343453 LTR8 732 - 2 156 149809 154 chain 3763 chr6 171115067 + 33361850 33361896 MER20 218 + 87 132 210908 4 1 0 41 chain 5252 chr6 171115067 + 33370150 33370213 MER2 342 + 152 215 192493 63 chain 22150 chr6 171115067 + 33376667 33376962 AluY 311 + 0 292 119586 89 0 4 39 4 5 37 2 1 13 0 3 93 10 0 8 chain 76869 chr6 171115067 + 33428032 33428876 L1PA3long 6157 + 5314 6157 45048 355 1 0 488 chain 4120 chr6 171115067 + 33430494 33430537 MER66D 528 + 360 403 205653 43 chain 28370 chr6 171115067 + 33433039 33433391 THE1A 353 + 2 353 91699 108 1 0 243 chain 127310 chr6 171115067 + 33433391 33434951 THE1A-int 1579 + 0 1566 28740 567 0 1 94 2 3 380 4 5 92 0 1 362 0 2 59 chain 3787 chr6 171115067 + 33439210 33439266 L1PB1 5432 + 5375 5427 210559 16 1 0 13 1 0 18 2 0 5 chain 23818 chr6 171115067 + 33439859 33440181 AluSp 311 - 9 311 111376 174 2 1 58 15 0 21 5 0 27 0 1 20 chain 101535 chr6 171115067 + 33451719 33452836 L1PA3long 6157 - 0 1112 36391 5 3 0 1101 2 0 6 chain 136414 chr6 171115067 + 33452844 33454399 SVA_D 2077 - 1 2076 26762 638 0 57 48 0 477 174 5 0 646 3 1 16 9 2 16 chain 4072 chr6 171115067 + 33464878 33464924 LTR12C 1709 + 0 46 206295 46 chain 2356 chr6 171115067 + 33470904 33470950 LTR12C 1709 + 776 822 182794 46 chain 23403 chr6 171115067 + 33470991 33471286 LTR12C 1709 + 703 997 113634 134 1 0 160 chain 3495 chr6 171115067 + 33475888 33475935 MER112 246 + 195 241 215438 31 1 0 15 chain 23472 chr6 171115067 + 33476329 33476607 AluSp 311 - 17 294 113261 162 1 0 115 chain 21256 chr6 171115067 + 33486055 33486328 AluSq2 311 + 29 303 123003 104 6 7 163 chain 1544 chr6 171115067 + 33488860 33488902 LTR12C 1709 - 991 1033 209458 42 chain 5193 chr6 171115067 + 33488909 33489065 LTR12C 1709 - 680 995 193116 11 78 0 45 0 237 22 chain 7614 chr6 171115067 + 33491647 33491769 L1MB3 1562 - 454 556 173449 10 20 0 92 chain 73938 chr6 171115067 + 33493155 33493945 SVA_F 1814 + 1027 1814 46549 150 2 0 4 1 0 633 chain 119155 chr6 171115067 + 33500000 33501499 LTR12C 1709 + 15 1700 31358 738 0 2 14 1 0 43 0 200 98 2 1 6 2 0 107 0 4 101 4 0 78 34 21 43 1 2 227 chain 25417 chr6 171115067 + 33506727 33507025 AluY 311 + 5 304 102604 127 0 1 171 chain 24632 chr6 171115067 + 33529048 33529339 AluYc3 301 - 10 300 106817 20 2 0 156 1 2 112 chain 24322 chr6 171115067 + 33529476 33529769 AluSp 311 + 11 301 108533 121 3 0 169 chain 22129 chr6 171115067 + 33532426 33532711 AluSp 311 + 8 293 119663 12 3 0 249 0 1 6 0 2 15 chain 25105 chr6 171115067 + 33533482 33533796 AluSp 311 - 8 311 104256 10 5 0 28 6 0 265 chain 22415 chr6 171115067 + 33549632 33549894 AluY 311 + 40 300 118404 24 2 0 236 chain 25810 chr6 171115067 + 33568862 33569159 AluSp 311 - 6 303 100826 297 chain 14681 chr6 171115067 + 33570229 33570454 MSTB 430 - 14 245 142317 111 0 5 7 1 0 65 7 19 8 10 0 16 chain 36503 chr6 171115067 + 33572676 33573178 MSTB-int 1649 - 1136 1639 74236 147 17 18 268 11 10 54 0 1 5 chain 2911 chr6 171115067 + 33577202 33577233 L1MC2 1988 + 1948 1979 226849 31 chain 80724 chr6 171115067 + 33598930 33599880 LTR13A 966 - 0 966 43297 111 0 1 4 1 0 698 1 13 62 0 4 73 chain 5726 chr6 171115067 + 33606080 33606465 MER21C 908 - 527 903 187880 37 51 43 13 56 70 18 141 124 23 17 19 29 chain 21680 chr6 171115067 + 33616681 33616967 AluSg7 307 - 16 295 121467 11 3 1 74 5 1 72 1 0 120 chain 73981 chr6 171115067 + 33777736 33778696 LTR5_Hs 974 - 0 974 46524 103 20 18 19 8 15 163 1 0 185 0 1 180 0 1 161 5 13 115 chain 148992 chr6 171115067 + 33799714 33801379 SVA_D 2077 - 0 2077 24755 6 5 0 46 0 1 568 2 101 127 0 312 275 0 8 134 0 3 280 1 0 187 5 0 29 chain 25331 chr6 171115067 + 33835636 33835931 AluSg4 309 + 4 297 103068 119 2 0 174 chain 50362 chr6 171115067 + 33841148 33841784 PABL_A 660 + 0 649 58747 65 1 6 57 1 0 49 2 10 393 0 1 68 chain 37204 chr6 171115067 + 33847512 33847982 LTR7B 505 + 0 490 73234 32 3 0 195 2 0 5 2 0 5 13 38 133 0 2 80 chain 46814 chr6 171115067 + 33848324 33848902 LTR10C 591 + 0 591 61360 14 0 5 8 1 0 439 1 3 28 11 13 16 0 5 60 chain 57923 chr6 171115067 + 33858104 33858865 MER4E 760 + 0 760 54020 17 0 1 133 22 25 77 9 7 101 4 0 214 0 1 5 1 0 13 0 1 165 chain 92857 chr6 171115067 + 33884067 33885139 MER11C 1089 - 16 1089 38698 195 2 0 310 2 1 337 0 5 162 9 8 55 chain 15223 chr6 171115067 + 33920953 33921171 L1MA6 2487 + 1966 2180 140705 32 9 8 63 3 0 111 chain 21579 chr6 171115067 + 33934669 33935022 MSTA 426 + 9 405 121848 99 16 40 54 40 38 53 4 24 60 0 1 27 chain 3935 chr6 171115067 + 33967523 33967566 LTR37A 408 + 273 316 208346 43 chain 4967 chr6 171115067 + 33984597 33984704 LTR12C 1709 - 992 1058 195518 34 41 0 32 chain 3550 chr6 171115067 + 34032630 34032698 MIRb 242 - 105 174 214534 36 17 18 15 chain 23835 chr6 171115067 + 34130734 34131023 AluSg7 307 - 9 299 111282 165 1 2 123 chain 251298 chr6 171115067 + 34132989 34138234 L1MA2 4263 - 205 4156 16156 100 1 0 38 0 1 110 3 0 63 7 8 76 5 4 72 0 5 12 9 0 3 2 0 400 8 10 244 1 2 142 1 0 67 5 0 52 7 5 87 0 4 301 0 2 9 9 21 38 0 13 59 11 19 125 9 12 45 0 1 95 27 28 17 741 0 144 0 1 84 6 4 113 0 5 181 0 1 191 2 1 11 949 367 182 1 0 130 0 1 20 7 5 43 2 0 25 8 9 69 20 18 56 chain 17185 chr6 171115067 + 34135254 34135963 MSTA 426 + 0 399 135077 17 9 10 75 0 2 39 455 141 73 0 1 41 chain 59908 chr6 171115067 + 34139056 34139867 L1M1 2793 - 777 1600 52871 74 2 8 144 10 20 38 0 4 364 1 3 48 0 1 35 4 1 7 4 0 18 4 0 58 chain 36231 chr6 171115067 + 34141674 34142113 MER75 514 + 62 498 74588 294 3 0 142 chain 9614 chr6 171115067 + 34184193 34186698 L1MD 993 - 164 645 162513 47 6 1 46 2290 273 69 7 8 26 3 0 11 chain 20673 chr6 171115067 + 34190360 34190612 AluSp 311 + 54 302 125062 71 1 0 172 3 0 5 chain 24111 chr6 171115067 + 34199121 34199403 AluSp 311 - 15 297 109687 282 chain 79840 chr6 171115067 + 34220273 34222328 L1PB1 5432 + 3481 5422 43666 62 0 635 292 0 1 37 8 13 105 3 0 30 0 1 19 1 0 29 0 2 79 0 1 10 3 2 14 318 0 189 2 0 10 514 102 24 1 0 8 1 0 4 13 9 9 3 1 50 3 2 12 8 7 41 1 0 7 32 20 18 4 2 4 1 0 10 9 7 21 1 0 21 0 8 5 1 0 18 chain 26604 chr6 171115067 + 34225307 34225599 AluYk4 311 + 0 292 97642 292 chain 27110 chr6 171115067 + 34227523 34227876 THE1A 353 - 0 353 95901 243 2 1 24 0 1 84 chain 51731 chr6 171115067 + 34227881 34228859 THE1A-int 1579 - 5 662 57801 62 326 4 135 1 0 225 4 6 225 chain 105488 chr6 171115067 + 34236619 34237912 LTR12C 1709 + 0 1709 35378 103 7 5 201 0 1 4 1 0 478 1 319 6 2 0 107 0 4 168 0 102 96 4 0 115 chain 20626 chr6 171115067 + 34242282 34242556 AluSc 308 + 27 296 125202 63 2 1 174 12 8 23 chain 78472 chr6 171115067 + 34294663 34295947 LTR13A 966 - 0 966 44286 59 11 7 51 1 0 241 313 0 224 1 0 255 0 1 128 chain 68425 chr6 171115067 + 34297432 34298221 L1PA5 6144 - 2 793 49076 145 2 4 642 chain 3758 chr6 171115067 + 34334573 34334620 L1MB3 1562 + 1494 1540 210978 30 1 0 16 chain 63153 chr6 171115067 + 34339527 34340270 L1PA5 6144 - 3 748 51379 143 15 17 585 chain 25628 chr6 171115067 + 34356874 34357259 THE1D 372 + 0 372 101590 72 1 0 4 22 0 24 1 3 33 0 4 46 5 8 118 0 1 59 chain 136207 chr6 171115067 + 34364800 34366923 SVA_F 1814 + 335 1814 26798 613 126 14 218 532 0 634 chain 7089 chr6 171115067 + 34365415 34365538 SVA_F 1814 + 965 1088 121072 123 chain 24186 chr6 171115067 + 34365757 34366027 SVA_F 1814 + 1004 1274 94375 178 5 5 87 chain 7380 chr6 171115067 + 34366027 34366106 SVA_F 1814 + 1098 1177 139869 79 chain 2309 chr6 171115067 + 34366118 34366289 SVA_F 1814 + 849 940 145883 6 1 0 43 79 0 42 chain 6898 chr6 171115067 + 34366169 34366247 SVA_F 1814 + 1011 1089 154656 78 chain 21311 chr6 171115067 + 34369483 34369751 AluY 311 + 29 291 122826 79 0 1 24 8 1 157 chain 3033 chr6 171115067 + 34377159 34377229 MER90a 614 - 142 213 224344 26 25 26 19 chain 23976 chr6 171115067 + 34388505 34388813 AluY 311 + 4 301 110469 129 1 0 142 0 2 10 12 0 14 chain 24435 chr6 171115067 + 34395951 34396242 AluY 311 + 0 289 107881 44 7 5 240 chain 24659 chr6 171115067 + 34397197 34397537 MER4A1 472 - 10 375 106676 19 0 2 41 7 9 128 12 33 133 chain 46338 chr6 171115067 + 34398909 34399422 MER9a1 513 - 0 513 61738 513 chain 23497 chr6 171115067 + 34402270 34402566 AluSp 311 - 7 300 113140 42 3 0 251 chain 12188 chr6 171115067 + 34407319 34407537 LTR12 884 + 164 374 151459 32 1 26 114 51 18 20 chain 28511 chr6 171115067 + 34416451 34416754 AluYa5 310 - 7 310 91142 303 chain 3541 chr6 171115067 + 34468032 34468074 MER57B1 401 + 294 336 214697 42 chain 50850 chr6 171115067 + 34468185 34468951 Tigger1 2417 - 1084 1852 58397 85 15 13 17 8 0 18 6 7 35 6 7 5 1 0 107 0 3 43 19 18 48 0 3 164 14 19 167 0 1 8 chain 14164 chr6 171115067 + 34571144 34571388 AluSc8 310 + 15 262 143999 108 13 15 37 0 32 9 37 6 40 chain 26002 chr6 171115067 + 34611127 34611471 HSMAR2 1300 + 879 1246 100009 22 6 30 138 0 1 51 2 0 125 chain 6543 chr6 171115067 + 34648590 34648689 MER50B 698 - 131 227 180903 31 1 0 21 2 1 31 1 0 12 chain 20144 chr6 171115067 + 34654463 34654675 AluYd8 298 + 0 212 126695 212 chain 4988 chr6 171115067 + 34655025 34655088 L1MB5 1630 + 810 873 195268 63 chain 24442 chr6 171115067 + 34668013 34668310 AluSp 311 + 5 302 107847 297 chain 75687 chr6 171115067 + 34687236 34688205 LTR5_Hs 974 - 0 974 45661 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 177 0 1 122 1 0 167 chain 3388 chr6 171115067 + 34695307 34695345 MIRc 230 - 45 83 217327 38 chain 20285 chr6 171115067 + 34703704 34703940 AluSg4 309 + 10 249 126269 85 0 1 30 0 2 121 chain 24255 chr6 171115067 + 34726097 34726381 AluSp 311 - 17 301 108912 284 chain 22475 chr6 171115067 + 34726557 34726826 AluYc 301 + 36 301 118137 84 0 2 23 10 4 152 chain 24985 chr6 171115067 + 34731974 34732282 AluSp 311 + 0 302 104883 91 0 3 193 5 0 9 4 0 6 chain 26425 chr6 171115067 + 34752966 34753265 AluSp 311 + 10 309 98323 299 chain 155848 chr6 171115067 + 34753556 34755311 SVA_D 2077 + 0 2077 23875 13 12 0 15 1 0 156 0 2 731 0 137 38 0 1 137 0 176 39 1 0 478 0 20 134 chain 2620 chr6 171115067 + 34777232 34777322 Tigger2b_Pri 1066 - 0 88 231437 17 49 47 24 chain 18299 chr6 171115067 + 34786933 34787129 L1PA2 6032 - 3 199 132074 196 chain 3122 chr6 171115067 + 34787834 34787894 LTR40c 466 - 5 60 222519 10 4 0 13 0 6 7 7 0 19 chain 7057 chr6 171115067 + 34789221 34789317 HY3 101 + 0 100 177049 16 0 3 26 2 0 23 0 3 29 chain 22663 chr6 171115067 + 34808056 34808349 AluSq10 312 + 10 289 117255 34 6 5 71 13 0 169 chain 65538 chr6 171115067 + 34811236 34813832 L1MA3 4352 - 0 1769 50320 16 3 4 18 1 0 26 8 6 22 2 0 24 4 0 72 919 638 123 0 1 21 27 34 420 6 0 62 0 6 17 7 10 54 8 10 12 622 61 41 20 29 6 0 1 35 chain 6846 chr6 171115067 + 34841619 34841703 HY3 101 + 12 96 178612 84 chain 26173 chr6 171115067 + 34946305 34946602 AluSp 311 + 5 302 99311 297 chain 25230 chr6 171115067 + 34966144 34966612 LTR2B 499 + 9 499 103587 5 1 0 10 0 10 20 0 8 7 40 44 12 8 0 90 6 2 10 0 15 66 0 1 24 16 14 97 17 16 39 chain 108727 chr6 171115067 + 34968244 34969607 Harlequin-int 5206 + 125 2258 34498 8 16 0 10 4 0 145 0 1 17 0 2 48 12 17 110 4 0 43 4 1 359 0 778 203 5 16 375 chain 25305 chr6 171115067 + 35006969 35007261 AluSp 311 - 6 299 103194 142 0 1 150 chain 11721 chr6 171115067 + 35072480 35072667 L1MDa 1598 + 1279 1468 153377 40 17 19 35 2 3 66 1 0 26 chain 24218 chr6 171115067 + 35102646 35102943 AluSp 311 + 0 301 109109 46 4 8 247 chain 47707 chr6 171115067 + 35105817 35106665 L1MA3 4352 + 3532 4352 60688 296 0 2 15 4 19 34 0 1 4 29 21 138 9 8 22 99 72 16 1 0 74 7 5 23 1 0 6 1 0 21 26 21 22 chain 11167 chr6 171115067 + 35122870 35123082 L1MB2 1706 - 12 210 155564 7 0 1 75 1 0 5 53 39 71 chain 4704 chr6 171115067 + 35142171 35142442 L1MB7 1623 + 1389 1598 198472 33 1 0 7 121 84 9 7 0 10 45 28 38 chain 3606 chr6 171115067 + 35192749 35192851 MER3 215 - 14 149 213537 29 49 82 24 chain 20545 chr6 171115067 + 35245934 35246173 AluSp 311 - 1 240 125488 239 chain 4478 chr6 171115067 + 35250157 35250211 MER53 195 + 136 190 201035 54 chain 54481 chr6 171115067 + 35282218 35282956 L1MA4 2864 - 675 1410 56040 45 3 4 22 1 0 112 7 6 202 3 1 343 chain 25510 chr6 171115067 + 35294389 35294679 AluY 311 + 0 289 102178 12 1 0 277 chain 382303 chr6 171115067 + 35299747 35304213 L1P2 5180 + 13 4481 10685 132 7 6 42 2 1 53 1 0 160 7 0 4 4 0 50 1 0 54 1 0 88 0 2 96 0 1 85 1 0 6 1 0 349 0 4 800 0 2 224 0 1 40 0 1 176 0 4 377 1 8 911 2 0 791 chain 192918 chr6 171115067 + 35304389 35306569 L1PA6 6164 - 12 2226 19777 836 0 4 143 0 28 466 0 2 735 chain 116092 chr6 171115067 + 35307540 35308770 SVA_F 1814 + 0 1472 32419 886 0 242 344 chain 4040 chr6 171115067 + 35319180 35319242 Charlie1a 1436 - 702 762 206791 29 5 3 28 chain 3225 chr6 171115067 + 35323712 35323747 MER57A1 433 - 66 101 220514 35 chain 4993 chr6 171115067 + 35333887 35333944 MLT1F2 592 - 1 58 195220 57 chain 66227 chr6 171115067 + 35351099 35351915 SVA_D 2077 + 327 1138 49993 298 0 1 177 40 0 105 3 0 8 0 1 4 0 34 79 2 4 100 chain 4032 chr6 171115067 + 35351930 35351990 SVA_F 1814 + 1061 1121 135589 60 chain 82071 chr6 171115067 + 35351990 35353431 SVA_F 1814 + 881 1812 42734 35 524 0 30 0 16 211 1 0 282 0 3 339 3 0 5 1 0 10 chain 12982 chr6 171115067 + 35352043 35352185 SVA_F 1814 + 937 1094 86899 11 0 15 131 chain 21596 chr6 171115067 + 35352185 35352549 SVA_F 1814 + 903 1107 81743 44 0 15 70 175 0 75 chain 6034 chr6 171115067 + 35352299 35352365 SVA_F 1814 + 1208 1274 86899 66 chain 10837 chr6 171115067 + 35375328 35375449 L1PA3long 6157 + 6036 6157 156839 121 chain 44735 chr6 171115067 + 35397325 35397895 LTR10E 629 - 0 629 63348 6 1 0 55 2 0 268 5 4 21 0 62 8 0 1 38 0 2 149 2 0 15 chain 4534 chr6 171115067 + 35440339 35440439 MER53 195 + 1 169 200416 36 34 102 30 chain 23582 chr6 171115067 + 35488058 35488339 AluSq10 312 + 15 297 112680 110 1 0 34 0 1 118 0 1 18 chain 25588 chr6 171115067 + 35504947 35505244 AluSp 311 - 13 311 101786 278 0 1 19 chain 86602 chr6 171115067 + 35527495 35528493 LTR13 1007 - 0 1007 40928 162 0 5 129 0 4 309 0 1 4 2 1 6 0 1 81 1 0 304 chain 32762 chr6 171115067 + 35534606 35535108 LTR10B 488 - 0 488 79594 13 1 0 18 5 4 171 0 4 57 42 35 34 7 0 107 1 0 33 2 1 11 chain 4149 chr6 171115067 + 35567271 35567321 U6 107 - 51 100 205247 4 1 0 45 chain 9218 chr6 171115067 + 35567677 35567894 Tigger3a 397 - 20 238 164468 19 93 94 105 chain 8003 chr6 171115067 + 35573480 35573657 L1P4 1494 + 177 332 171034 49 25 25 11 34 12 58 chain 78245 chr6 171115067 + 35619716 35620763 MER11C 1089 + 0 1063 44393 247 7 16 50 0 4 69 1 0 177 16 15 106 7 11 4 1 0 38 0 1 125 1 2 55 1 0 117 0 1 25 chain 5498 chr6 171115067 + 35622058 35622144 Tigger4a 237 + 153 237 190062 25 1 2 50 3 0 7 chain 3735 chr6 171115067 + 35667880 35667924 MLT1H-int 1039 + 887 931 211396 44 chain 29031 chr6 171115067 + 35669010 35669319 AluYa5 310 - 1 310 88847 309 chain 52012 chr6 171115067 + 35706910 35707531 PABL_A 660 - 0 635 57619 218 0 4 159 1 2 187 0 9 56 chain 22777 chr6 171115067 + 35710993 35711283 AluSp 311 - 12 300 116693 158 11 9 6 0 1 4 1 0 110 chain 23340 chr6 171115067 + 35720607 35720904 AluSp 311 - 10 303 113981 12 2 0 24 0 2 28 2 0 93 3 0 101 0 1 32 chain 33964 chr6 171115067 + 35731325 35731776 MER4A1 472 - 0 472 77671 224 1 22 47 1 0 155 5 6 18 chain 16434 chr6 171115067 + 35732612 35732862 AluSx3 311 + 1 260 137112 52 5 0 73 0 1 16 0 1 49 5 1 17 14 30 19 chain 17992 chr6 171115067 + 35732934 35733158 AluSx1 309 + 84 308 132881 49 2 0 130 0 2 43 chain 15958 chr6 171115067 + 35753321 35753556 MER50B 698 - 468 698 138492 15 9 4 83 7 6 70 0 1 51 chain 7307 chr6 171115067 + 35767228 35767315 MER4E1 777 - 7 94 175394 87 chain 27919 chr6 171115067 + 35783666 35783974 AluYb9 318 + 0 308 93281 308 chain 13473 chr6 171115067 + 35791680 35791849 MER2 342 - 21 190 146442 169 chain 147789 chr6 171115067 + 35795121 35796719 L1PA2 6032 - 3 1596 24907 8 5 0 1585 chain 11133 chr6 171115067 + 35812749 35812958 L1MC1 2226 + 1888 2099 155686 28 0 1 63 3 0 15 2 0 5 0 17 30 22 16 20 5 0 16 chain 9737 chr6 171115067 + 35817622 35817814 L1MA7 2200 + 1794 1977 161901 10 5 0 23 2 0 3 1 0 36 13 15 35 7 6 27 2 0 28 chain 2645 chr6 171115067 + 35831424 35831459 L1M1 2793 + 1730 1764 231091 14 1 0 20 chain 65627 chr6 171115067 + 35831725 35832676 L1MA2 4263 + 3165 4114 50280 8 0 6 181 1 0 207 6 0 17 6 2 76 1 0 43 3 8 83 30 26 42 0 6 88 1 0 8 1 0 61 0 3 4 0 1 23 7 0 42 2 4 10 chain 3020 chr6 171115067 + 35869274 35869312 MLT1B 390 + 311 350 224617 28 0 1 10 chain 3662 chr6 171115067 + 35889931 35889971 LTR46 455 - 0 40 212532 40 chain 116276 chr6 171115067 + 35898862 35900255 LTR12C 1709 + 0 1668 32348 303 8 5 342 0 278 184 1 0 5 3 1 20 2 1 85 0 4 440 chain 21001 chr6 171115067 + 35907052 35907355 THE1D 372 + 0 308 123912 53 18 11 71 0 4 37 11 19 113 chain 129603 chr6 171115067 + 35907709 35909270 THE1A-int 1579 + 0 1579 28179 520 9 19 139 0 1 532 5 11 347 0 1 9 chain 26928 chr6 171115067 + 35909276 35909692 THE1A 353 + 7 353 96522 5 3 0 12 0 1 59 0 1 26 1 0 32 0 1 191 69 0 18 chain 24931 chr6 171115067 + 35933173 35933476 AluSp 311 + 0 299 105156 53 7 6 73 3 0 167 chain 13179 chr6 171115067 + 35941216 35941443 MER30 238 + 0 238 147548 15 11 10 71 15 29 74 11 9 30 chain 25212 chr6 171115067 + 35966052 35966360 AluSp 311 + 2 310 103675 308 chain 2821 chr6 171115067 + 35976205 35976255 L1MD1 2063 + 1722 1771 228438 17 9 8 24 chain 6461 chr6 171115067 + 35980287 35980448 MER20 218 - 40 189 181550 16 1 3 49 60 46 35 chain 25270 chr6 171115067 + 35994853 35995138 AluSp 311 - 25 311 103368 69 0 1 216 chain 8343 chr6 171115067 + 36004818 36004945 Tigger1 2417 + 2217 2338 169159 28 12 6 87 chain 11400 chr6 171115067 + 36047177 36047355 MER30 238 - 0 202 154698 78 17 42 8 4 0 64 0 3 7 chain 279564 chr6 171115067 + 36051592 36055641 L1PA10 4194 + 116 4161 14658 8 2 0 13 4 0 7 39 31 13 3 0 12 3 0 7 23 17 8 2 0 9 1 0 9 1 0 21 2 0 15 52 27 22 2 0 18 1 0 10 1 0 7 1 0 8 3 2 14 4 0 9 1 0 15 0 1 69 3 1 248 0 5 112 11 30 179 0 1 11 2 0 147 8 10 61 0 5 157 42 45 79 2 1 84 10 7 159 0 4 189 4 5 44 0 9 183 0 1 99 0 1 33 3 5 226 1 0 4 14 13 16 5 3 9 2 1 22 1 9 32 0 1 159 1 9 69 13 14 59 3 4 163 4 5 13 10 6 203 9 14 66 0 5 115 0 4 195 0 1 17 18 12 210 0 2 31 4 1 35 1 0 10 chain 4217 chr6 171115067 + 36115975 36116021 MLT2C2 476 - 0 46 204336 46 chain 76865 chr6 171115067 + 36116135 36117180 MER11C 1089 - 26 1089 45049 25 0 1 117 1 0 56 30 31 95 0 1 38 1 0 4 1 5 112 16 15 177 1 0 65 0 4 61 0 9 218 0 2 27 chain 27903 chr6 171115067 + 36124108 36124485 THE1C 375 - 0 373 93356 25 1 0 152 17 12 5 0 2 177 chain 106229 chr6 171115067 + 36133551 36135040 L1PB1 5432 + 3965 5424 35205 238 0 7 275 6 7 122 10 7 194 3 0 288 1 2 9 1 0 24 1 0 9 16 11 11 3 1 50 19 17 44 1 0 15 3 0 16 9 0 15 24 19 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 25404 chr6 171115067 + 36154075 36154446 THE1C 375 + 0 375 102665 37 1 6 64 0 1 63 39 37 167 chain 14310 chr6 171115067 + 36155044 36155349 MSTA 426 - 64 397 143530 31 3 1 13 1 4 8 0 5 51 44 48 40 19 23 10 13 28 26 1 0 45 chain 22125 chr6 171115067 + 36166874 36167193 MER1B 344 + 0 344 119681 24 6 17 175 4 0 30 1 0 4 16 35 59 chain 6575 chr6 171115067 + 36171080 36171162 MIRb 242 + 155 237 180656 82 chain 4160 chr6 171115067 + 36175738 36175935 MIR 256 + 32 230 205090 30 130 131 37 chain 28649 chr6 171115067 + 36256220 36256533 AluYb8 318 - 10 317 90524 176 6 0 131 chain 5301 chr6 171115067 + 36268616 36268810 L1MC3 1789 - 351 527 192008 23 1 0 4 51 43 23 47 38 45 chain 11799 chr6 171115067 + 36272927 36273079 MER30 238 + 68 238 153050 40 3 21 109 chain 6006 chr6 171115067 + 36281823 36281960 MER53 195 + 41 193 185184 43 36 61 36 10 0 12 chain 18821 chr6 171115067 + 36282915 36283125 L1PA3long 6157 - 4 215 130607 66 0 1 144 chain 17678 chr6 171115067 + 36312234 36312451 MLT2A1 477 + 221 477 133752 163 4 0 15 0 43 35 chain 21968 chr6 171115067 + 36321408 36321782 THE1B 368 + 5 368 120359 14 10 0 5 0 1 65 14 0 12 0 9 45 10 8 5 1 0 30 12 17 90 1 0 4 8 10 48 chain 24743 chr6 171115067 + 36329793 36330091 AluYk4 311 + 0 294 106209 173 9 5 116 chain 133731 chr6 171115067 + 36330911 36332572 LTR12C 1709 - 0 1709 27270 313 102 0 25 0 29 114 0 4 112 1 0 258 0 118 736 chain 2739 chr6 171115067 + 36365025 36365072 L1MB7 1623 + 611 659 229625 11 4 5 32 chain 25747 chr6 171115067 + 36372749 36373149 Tigger3b 1229 + 338 765 101098 8 0 1 79 1 2 123 1 3 4 1 0 9 6 0 6 2 13 37 0 4 35 0 1 6 0 2 17 1 0 8 0 11 8 6 8 42 chain 71024 chr6 171115067 + 36416481 36417443 LTR12 884 - 0 884 47917 484 0 22 41 42 1 122 21 0 164 37 0 25 1 0 25 chain 2975 chr6 171115067 + 36417006 36417048 LTR12 884 - 638 680 130770 42 chain 25091 chr6 171115067 + 36426032 36426346 AluSp 311 + 0 310 104340 36 2 1 95 3 0 178 chain 9943 chr6 171115067 + 36431291 36431625 MLT1A1 405 + 0 405 160869 17 6 7 12 34 32 33 0 36 13 20 36 9 6 0 11 26 58 14 39 35 22 2 1 42 1 0 27 chain 16330 chr6 171115067 + 36441855 36442047 L1PA2 6032 - 0 197 137402 17 0 5 175 chain 12244 chr6 171115067 + 36492824 36493017 L1PA8 5853 + 5664 5853 151233 15 1 0 13 2 1 10 0 1 39 1 0 17 2 1 68 4 0 12 0 3 9 chain 15268 chr6 171115067 + 36517947 36518192 AluJo 314 - 45 304 140578 101 30 43 12 10 11 92 chain 7595 chr6 171115067 + 36518209 36518323 MER96B 391 + 231 342 173584 60 8 5 46 chain 22675 chr6 171115067 + 36525264 36525552 AluSc8 310 + 8 298 117191 124 0 3 144 6 5 14 chain 10295 chr6 171115067 + 36537969 36538149 MER30 238 - 0 201 159155 41 3 0 37 1 7 25 8 21 31 6 11 28 chain 25690 chr6 171115067 + 36548414 36548710 AluSp 311 - 15 311 101330 296 chain 25841 chr6 171115067 + 36599765 36600056 AluYf4 310 - 18 310 100696 93 0 1 198 chain 3414 chr6 171115067 + 36602731 36602772 L1PA6 6164 + 6119 6162 216865 32 0 2 9 chain 9766 chr6 171115067 + 36607343 36607449 U1 164 - 58 164 161760 106 chain 3636 chr6 171115067 + 36633176 36633225 MLT2B2 565 + 519 565 213041 8 3 0 38 chain 4273 chr6 171115067 + 36640670 36640719 HY3 101 + 51 100 203563 49 chain 13681 chr6 171115067 + 36656817 36656976 L1PA6 6164 + 6005 6162 145665 149 2 0 8 chain 2920 chr6 171115067 + 36732183 36732214 MamRep488 187 - 69 100 226700 31 chain 10470 chr6 171115067 + 36758156 36758326 Charlie1b 519 + 66 278 158391 33 2 43 14 16 17 105 chain 25096 chr6 171115067 + 36829457 36829760 AluSp 311 - 3 300 104313 14 6 0 283 chain 10090 chr6 171115067 + 36837075 36837219 MSTC 436 - 60 206 160134 92 13 15 39 chain 5947 chr6 171115067 + 36838262 36838351 MER2 342 + 84 172 185706 20 8 7 61 chain 145970 chr6 171115067 + 36850066 36852835 MER57-int 2662 + 526 2659 25175 241 0 19 84 0 8 85 340 0 81 0 8 51 0 4 46 6 0 156 0 3 54 0 2 36 1 0 197 0 16 64 7 6 222 3 0 6 318 6 337 0 1 68 11 6 91 18 12 27 5 6 16 0 4 15 124 100 21 3 0 30 1 0 4 chain 29533 chr6 171115067 + 36850494 36850814 AluYb8 318 - 0 318 86506 186 2 0 132 chain 51287 chr6 171115067 + 36858781 36859367 L1PA5 6144 - 9 595 58125 144 1 2 280 1 0 160 chain 3098 chr6 171115067 + 36860301 36860335 MER20 218 - 150 184 222945 34 chain 24137 chr6 171115067 + 36866044 36866334 AluSp 311 - 1 291 109538 290 chain 133946 chr6 171115067 + 36908785 36910265 SVA_C 1631 + 22 1631 27224 699 3 0 68 0 127 75 0 4 8 0 1 627 chain 13286 chr6 171115067 + 36914774 36915008 MER6A 605 - 0 255 147145 18 13 14 22 3 13 37 18 20 38 0 4 78 0 4 7 chain 25203 chr6 171115067 + 36918323 36918618 AluSp 311 - 16 311 103725 295 chain 4810 chr6 171115067 + 36934086 36934164 L1MB8 1703 - 225 301 197227 43 2 0 5 0 1 8 1 0 19 chain 23385 chr6 171115067 + 36957778 36958057 AluSp 311 + 0 277 113735 89 4 2 186 chain 12186 chr6 171115067 + 37003652 37003818 L1PA8 5853 + 5688 5853 151470 11 1 2 38 3 2 19 1 0 93 chain 7649 chr6 171115067 + 37011471 37011622 MSTD 398 - 239 398 173235 19 24 33 23 17 16 68 chain 3732 chr6 171115067 + 37019742 37019789 MIRb 242 + 68 117 211423 41 0 2 6 chain 22459 chr6 171115067 + 37033756 37034520 HSMAR2 1300 + 321 744 118206 17 45 48 12 0 4 130 26 21 69 324 0 18 17 11 20 1 0 60 12 0 13 chain 25718 chr6 171115067 + 37043121 37043418 AluSp 311 - 15 311 101226 158 1 0 138 chain 21810 chr6 171115067 + 37053942 37054227 AluSq2 311 + 10 290 120983 38 9 5 81 1 0 156 chain 13090 chr6 171115067 + 37075421 37075580 L1PA2 6032 + 5874 6032 147879 8 1 0 150 chain 8022 chr6 171115067 + 37080746 37080845 MSTD 398 - 299 398 170929 99 chain 23248 chr6 171115067 + 37087508 37087792 AluSx 319 + 7 291 114449 284 chain 3246 chr6 171115067 + 37089220 37089283 MER5A1 166 + 72 137 220107 13 13 14 16 0 1 21 chain 23628 chr6 171115067 + 37103302 37103576 AluSc5 308 + 10 284 112423 274 chain 4644 chr6 171115067 + 37149054 37149109 MER58B 340 + 207 262 199135 55 chain 48403 chr6 171115067 + 37153810 37154501 L1MA2 4263 - 162 829 60181 43 7 0 92 1 0 9 2 1 146 25 18 130 1 0 77 4 1 16 5 9 93 8 0 32 chain 69010 chr6 171115067 + 37162889 37163657 L1PA5 6144 + 5371 6138 48799 459 1 0 308 chain 4667 chr6 171115067 + 37166396 37166459 L1PB4 2604 + 2488 2550 198892 4 1 0 58 chain 27408 chr6 171115067 + 37194057 37194372 AluYk4 311 - 1 311 94941 178 5 0 132 chain 19673 chr6 171115067 + 37201597 37201877 MER47A 366 + 19 290 128190 15 0 1 7 2 1 94 1 0 49 9 1 103 chain 3149 chr6 171115067 + 37218988 37219035 U13_ 108 - 12 60 221933 14 4 5 29 chain 25286 chr6 171115067 + 37254446 37254743 AluSq10 312 + 9 306 103285 297 chain 10329 chr6 171115067 + 37262737 37262867 Tigger1 2417 + 1831 1963 158992 45 0 2 85 chain 41147 chr6 171115067 + 37265494 37265983 L1PA7 6471 + 5983 6469 67723 339 2 1 136 2 0 10 chain 55699 chr6 171115067 + 37305963 37306612 L1PA6 6164 - 2 650 55306 13 3 0 132 0 1 396 0 1 105 chain 136086 chr6 171115067 + 37313032 37314587 L1PA5 6144 - 4 1551 26815 144 3 5 1008 6 4 187 8 0 199 chain 41972 chr6 171115067 + 37315474 37316052 LTR43 600 + 1 600 66654 252 15 17 89 1 0 3 1 0 46 15 34 84 1 3 71 chain 25742 chr6 171115067 + 37352794 37353087 AluSp 311 - 17 310 101113 293 chain 45108 chr6 171115067 + 37369331 37369971 LTR76 689 - 7 682 62924 22 2 0 9 5 4 11 5 0 86 2 1 12 0 11 132 1 0 5 2 0 229 1 21 90 0 3 6 6 19 14 chain 23912 chr6 171115067 + 37378029 37378326 AluSp 311 + 0 310 110854 40 0 13 257 chain 3670 chr6 171115067 + 37397827 37397871 L1MB2 1706 - 26 70 212386 44 chain 37248 chr6 171115067 + 37468545 37469154 LTR12 884 - 11 883 73170 27 0 236 12 0 22 121 16 14 64 2 0 15 18 1 118 40 1 84 1 67 66 1 0 24 chain 2969 chr6 171115067 + 37468938 37468978 LTR12 884 - 773 815 138035 3 5 6 24 5 6 3 chain 4969 chr6 171115067 + 37536723 37536785 MIRb 242 - 111 173 195484 62 chain 25394 chr6 171115067 + 37541759 37542059 AluSp 311 + 10 306 102713 49 4 0 247 chain 55687 chr6 171115067 + 37566318 37566973 L1PA7 6471 - 2 655 55314 10 2 0 49 0 1 89 1 0 504 chain 2952 chr6 171115067 + 37605485 37605556 MIRb 242 + 105 172 226038 28 28 24 15 chain 10968 chr6 171115067 + 37718031 37718505 L1PA8 5853 + 5701 5847 156325 39 2 1 20 327 0 86 chain 7554 chr6 171115067 + 37728838 37728934 L1MB2 1706 - 139 236 173841 58 0 1 38 chain 24732 chr6 171115067 + 37777496 37777773 L1PA4 6152 + 5858 6136 106262 180 0 1 97 chain 24567 chr6 171115067 + 37807293 37807588 AluSc 308 - 13 308 107160 295 chain 2929 chr6 171115067 + 37831175 37831206 MADE1 96 - 64 95 226523 31 chain 5541 chr6 171115067 + 37842326 37842509 MLT1B 390 - 229 390 189652 54 106 84 23 chain 19866 chr6 171115067 + 37848583 37848799 L1HS 6032 + 5815 6031 127604 216 chain 5308 chr6 171115067 + 37876200 37876257 L1HS 6032 - 71 128 191926 57 chain 5299 chr6 171115067 + 37876257 37876316 L1PA2 6032 + 5972 6031 192025 59 chain 3380 chr6 171115067 + 37880346 37880383 HY5 76 + 0 37 217462 37 chain 7330 chr6 171115067 + 37896846 37896961 MER85 139 + 11 139 175229 47 0 3 14 9 20 4 1 0 40 chain 34532 chr6 171115067 + 37918567 37919049 L1PA15 4387 - 1128 1603 76860 87 6 4 30 0 1 99 0 1 103 25 18 132 chain 54146 chr6 171115067 + 37930262 37930968 LTR12_ 688 + 0 688 56266 58 0 4 60 1 26 18 42 0 304 4 0 43 1 0 175 chain 4436 chr6 171115067 + 37930979 37931049 L1M1 2793 + 1451 1522 201503 52 6 7 12 chain 22342 chr6 171115067 + 37938402 37938684 AluY 311 + 6 286 118734 12 1 0 107 2 1 160 chain 6651 chr6 171115067 + 37942809 37943832 L1ME1 1623 - 341 1433 180079 6 1 0 27 0 2 14 76 75 17 599 661 10 4 3 32 16 22 28 159 161 34 chain 13201 chr6 171115067 + 37951438 37951662 Tigger3b 1229 + 938 1165 147463 43 10 0 10 21 35 33 2 1 105 chain 5957 chr6 171115067 + 37975772 37975841 MER5A1 166 + 75 144 185625 69 chain 27353 chr6 171115067 + 38018156 38018517 THE1C 375 + 0 374 95103 64 6 16 104 2 3 17 0 2 168 chain 21356 chr6 171115067 + 38047841 38048082 L1PA7 6471 + 6219 6460 122664 241 chain 12259 chr6 171115067 + 38079012 38079203 MER2 342 + 14 213 151157 62 14 14 14 1 8 94 0 1 6 chain 7562 chr6 171115067 + 38091831 38092014 LTR12C 1709 - 672 936 173789 20 65 28 20 0 119 13 1 0 64 chain 209113 chr6 171115067 + 38096133 38099114 L1PB1 5432 - 12 3000 18558 11 6 5 14 1 0 20 1 0 24 2 0 14 8 5 30 14 1 57 7 6 14 1 0 49 3 1 10 2 0 3 2 0 10 1 0 23 21 8 12 1 0 161 0 1 61 0 13 242 0 4 266 0 2 159 93 97 296 7 8 56 27 6 45 0 31 43 13 14 58 4 0 15 0 2 589 0 4 103 1 0 6 0 1 112 1 0 126 1 6 44 5 4 27 1 0 8 0 1 6 0 6 24 0 4 20 chain 17900 chr6 171115067 + 38174060 38174301 AluSg7 307 - 78 292 133101 15 26 0 82 0 1 67 2 0 49 chain 20685 chr6 171115067 + 38221003 38221322 THE1D 372 - 61 372 125018 118 1 0 5 1 9 103 1 15 15 29 0 46 chain 8605 chr6 171115067 + 38222416 38222783 L1MB7 1623 + 1106 1429 167700 4 1 0 65 101 73 17 119 105 53 1 0 6 chain 17165 chr6 171115067 + 38223610 38223837 L1PA6 6164 + 5923 6147 135124 69 3 1 23 7 6 125 chain 4117 chr6 171115067 + 38239312 38239357 MER58A 224 + 43 88 205687 45 chain 77702 chr6 171115067 + 38241855 38242705 L1PA4 6152 - 1701 2552 44528 569 0 1 281 chain 143116 chr6 171115067 + 38242705 38244284 L1PA4 6152 + 4571 6151 25636 801 0 1 286 1 0 283 0 1 208 chain 28856 chr6 171115067 + 38254926 38255453 Tigger3c 601 + 161 540 89643 21 0 1 10 0 5 111 152 0 182 2 0 49 chain 84492 chr6 171115067 + 38259594 38260917 L1P3 4156 - 17 1013 41718 24 2 1 7 2 0 91 318 0 16 5 0 174 1 0 217 1 0 421 0 1 44 chain 140523 chr6 171115067 + 38260917 38262584 L1PA7 6471 + 4786 6466 26070 52 7 2 83 0 1 181 1 2 265 2 0 249 2 0 66 0 3 103 0 1 221 0 15 101 0 1 334 chain 285182 chr6 171115067 + 38266646 38269799 L1PA4 6152 - 13 3166 14343 1510 1 0 1224 0 1 418 chain 46574 chr6 171115067 + 38278439 38279609 L1MA3 4352 - 0 864 61544 22 45 70 54 482 130 76 0 23 89 8 7 54 2 1 338 chain 3644 chr6 171115067 + 38303813 38303853 THE1D 372 + 332 372 212910 40 chain 25983 chr6 171115067 + 38304078 38304454 THE1C 375 - 0 374 100083 55 1 0 83 13 9 46 4 6 106 8 9 60 chain 29011 chr6 171115067 + 38326545 38326846 AluYb8 318 - 17 318 88937 301 chain 15223 chr6 171115067 + 38362791 38363372 MLT1A0 366 + 25 326 140709 8 1 0 20 0 1 8 6 7 19 1 0 66 0 2 5 347 65 100 chain 24370 chr6 171115067 + 38368849 38369219 THE1D 372 + 0 372 108262 107 0 1 52 0 3 6 24 24 13 17 18 76 2 0 40 1 0 32 chain 62085 chr6 171115067 + 38393926 38394656 LTR17 781 + 0 732 51858 63 0 3 53 0 9 170 10 0 29 0 1 64 1 0 340 chain 27499 chr6 171115067 + 38401085 38401499 LTR7Y 441 + 0 431 94653 160 68 84 166 0 1 20 chain 58739 chr6 171115067 + 38401704 38402454 MER4E1 777 + 0 769 53560 191 0 5 34 4 7 91 0 2 164 0 11 135 2 0 129 chain 6552 chr6 171115067 + 38497219 38497357 L1M1 2793 + 805 939 180829 26 11 8 35 28 27 38 chain 76481 chr6 171115067 + 38497358 38498394 MER11A 1151 + 0 1151 45224 55 0 99 50 1 0 26 1 0 64 4 0 32 0 2 115 0 1 94 0 1 66 1 0 52 4 5 13 4 5 140 9 42 22 18 0 36 0 1 60 6 7 163 chain 2704 chr6 171115067 + 38513802 38513888 L2a 937 - 594 676 230190 15 33 32 27 3 0 8 chain 3390 chr6 171115067 + 38514389 38514427 Tigger1 2417 + 168 206 217292 38 chain 7067 chr6 171115067 + 38533737 38533826 HY1 111 + 13 106 176960 15 0 4 74 chain 3745 chr6 171115067 + 38559395 38559457 MIR 256 + 74 137 211243 36 1 3 13 2 1 10 chain 40398 chr6 171115067 + 38573589 38574118 MLT2A2 560 + 0 560 68740 169 24 40 184 0 6 6 3 8 137 0 4 6 chain 32542 chr6 171115067 + 38584304 38584727 LTR12F 595 + 0 595 79958 79 0 167 120 0 1 150 4 8 70 chain 451573 chr6 171115067 + 38584747 38590307 HERV9-int 5642 + 0 5547 8716 282 0 11 122 4 5 277 21 0 19 6 0 132 4 2 9 4 0 105 7 6 130 2 3 406 0 1 35 7 1 679 1 0 507 0 3 56 1 0 201 9 22 1062 0 4 740 0 1 380 0 1 28 1 0 87 1 0 140 5 3 14 42 40 11 1 0 22 chain 33428 chr6 171115067 + 38591811 38592262 LTR12F 595 + 0 595 78518 80 0 167 33 24 0 86 0 1 228 chain 45010 chr6 171115067 + 38635127 38635640 MER9a1 513 + 0 513 63045 19 2 0 365 1 0 4 0 1 65 0 2 57 chain 24993 chr6 171115067 + 38641528 38641874 THE1C 375 - 2 367 104838 174 5 20 25 8 12 134 chain 77949 chr6 171115067 + 38666927 38667987 MER11A 1151 + 0 1146 44548 108 0 2 33 0 93 56 6 2 32 0 3 59 0 1 48 6 7 94 0 1 296 25 1 26 16 21 37 0 1 60 6 7 44 5 4 34 0 6 59 1 2 9 chain 5395 chr6 171115067 + 38679070 38679132 LTR14A 344 + 282 344 191037 62 chain 31274 chr6 171115067 + 38716884 38717315 L1PA8 5853 + 5430 5853 82031 134 1 0 46 2 0 71 1 0 12 6 3 44 2 1 22 1 0 36 0 1 53 chain 220201 chr6 171115067 + 38724303 38726757 L1PA4 6152 - 0 2454 17870 10 0 6 1364 0 1 98 9 2 973 chain 13536 chr6 171115067 + 38737001 38737153 L1PA7 6471 - 5 157 146225 152 chain 13255 chr6 171115067 + 38753347 38753522 L1PA8 5853 - 93 262 147264 16 1 0 17 1 0 34 1 0 14 1 0 71 2 0 17 chain 23224 chr6 171115067 + 38755931 38756225 AluSc 308 - 18 308 114569 12 8 4 274 chain 32472 chr6 171115067 + 38764209 38764668 LTR2 463 + 0 463 80075 61 0 3 41 5 6 164 16 16 87 3 4 29 9 8 20 1 0 19 0 1 4 chain 49814 chr6 171115067 + 38776278 38776876 L1PA7 6471 + 5872 6469 59146 583 4 3 11 chain 4190 chr6 171115067 + 38791644 38791690 MADE1 96 - 50 96 204687 46 chain 12104 chr6 171115067 + 38800368 38800552 MER30 238 - 0 201 151782 26 0 1 13 3 0 60 3 0 5 6 28 68 chain 23686 chr6 171115067 + 38849325 38849604 AluSp 311 - 11 289 112111 37 1 0 241 chain 19386 chr6 171115067 + 38849825 38850166 L1PA15 4387 + 4003 4329 128987 101 1 0 20 8 6 33 1 0 14 9 8 17 4 0 15 1 0 36 20 17 44 3 1 14 chain 3439 chr6 171115067 + 38870680 38870720 Tigger3b 1229 + 42 82 216428 40 chain 13422 chr6 171115067 + 38874637 38874852 Tigger4a 237 + 23 227 146619 10 8 0 62 3 0 27 12 11 63 0 1 30 chain 31544 chr6 171115067 + 38889534 38889943 LTR7 482 - 0 482 81576 98 0 2 74 0 1 15 0 31 36 0 1 109 8 46 69 chain 27685 chr6 171115067 + 38904801 38905141 L1PA7 6471 + 6131 6470 94098 189 5 4 146 chain 23041 chr6 171115067 + 38916109 38916398 AluSp 311 - 8 300 115439 49 1 0 126 2 1 95 0 5 16 chain 29562 chr6 171115067 + 38922198 38922508 AluYg6 310 + 0 310 86374 310 chain 14467 chr6 171115067 + 38930617 38930893 L1PB1 5432 + 5168 5423 142991 52 0 2 15 1 0 43 1 0 21 49 35 10 2 0 24 1 0 21 1 0 13 1 0 10 2 0 9 chain 70829 chr6 171115067 + 38931466 38932227 SVA_F 1814 - 0 777 48000 10 2 0 617 1 0 10 1 0 19 0 20 101 chain 44132 chr6 171115067 + 38988305 38988889 L1PA8 5853 - 0 592 64038 89 0 7 16 2 1 44 14 18 7 0 1 60 3 1 45 1 0 303 chain 23398 chr6 171115067 + 38990997 38991273 AluY 311 + 11 287 113657 112 1 0 9 0 1 154 chain 12390 chr6 171115067 + 39072254 39072424 MER1B 344 + 158 344 150666 84 0 2 9 10 24 67 chain 23061 chr6 171115067 + 39090310 39090637 LTR7B 505 + 0 441 115347 105 0 10 49 15 33 10 0 3 24 8 18 26 0 74 25 1 0 64 chain 26825 chr6 171115067 + 39099290 39099723 LTR7 482 - 0 482 96894 177 0 1 6 2 33 37 6 17 28 44 0 19 13 63 101 chain 104674 chr6 171115067 + 39101219 39102655 HERVH-int 3825 - 0 1802 35573 67 0 5 250 0 1 53 18 18 60 7 13 6 6 0 50 1 0 4 0 1 111 9 376 44 3 0 5 27 18 647 5 10 63 chain 6561 chr6 171115067 + 39200689 39200768 MER4D1 891 + 121 200 180780 79 chain 5064 chr6 171115067 + 39204660 39204763 MIRb 242 - 59 166 194494 16 30 34 57 chain 2908 chr6 171115067 + 39216191 39216326 MLT1C 463 - 66 199 226900 28 78 77 9 3 2 17 chain 13656 chr6 171115067 + 39216335 39216534 MSTC 436 + 0 225 145753 18 0 4 97 6 19 16 5 13 22 0 1 35 chain 26341 chr6 171115067 + 39231872 39232163 AluY 311 + 6 298 98646 126 0 1 165 chain 554099 chr6 171115067 + 39422333 39428310 L1PA2 6032 + 51 6029 935 2365 0 1 3612 chain 220361 chr6 171115067 + 39445835 39448848 L1PB1 5432 - 5 2972 17860 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 7 4 15 14 5 7 2 0 4 1 0 16 1 0 44 1 0 15 2 1 52 2 0 9 5 1 12 9 8 24 1 0 9 8 12 237 64 0 102 0 1 45 1 0 514 5 9 390 14 62 168 0 1 238 1 0 261 1 0 57 9 5 69 0 1 90 10 9 374 chain 343731 chr6 171115067 + 39469083 39473712 L1PA11 4918 + 8 4578 11790 8 1 0 25 3 1 38 1 0 4 3 1 31 1 0 7 0 1 4 2 0 52 1 0 33 2 0 3 1 0 100 2 0 117 10 11 30 1 0 46 21 19 172 4 6 26 6 1 164 0 1 154 7 0 486 6 7 44 0 4 160 4 3 48 4 1 285 0 17 90 3 0 48 1 0 4 6 9 252 0 4 17 34 0 465 0 8 1039 1 0 274 6 0 65 2 1 13 2 0 65 2 0 16 2 1 19 4 0 9 34 25 12 1 0 12 3 1 11 chain 280198 chr6 171115067 + 39476017 39479875 L1PA6 6164 + 0 6159 14633 450 20 1 58 0 7 53 1 0 218 0 17 97 3 6 299 15 16 620 315 0 211 0 1 271 16 0 319 1 2623 51 5 9 570 2 0 254 1 0 8 chain 2997 chr6 171115067 + 39483729 39483764 Tigger4a 237 - 106 141 225101 35 chain 556698 chr6 171115067 + 39500804 39507003 L1PA3long 6157 + 6 6157 646 577 48 0 2594 1 0 1944 0 1 1035 chain 14724 chr6 171115067 + 39530741 39530989 AluSx4 309 + 10 258 142184 13 3 0 23 20 18 141 19 24 29 chain 15430 chr6 171115067 + 39552927 39553192 MER1B 344 - 0 281 140102 23 11 10 30 17 20 125 15 29 44 chain 31483 chr6 171115067 + 39609066 39609430 L1PA4 6152 + 5787 6152 81671 152 0 1 212 chain 24174 chr6 171115067 + 39613256 39613516 L1P1 4361 - 541 801 109350 260 chain 34159 chr6 171115067 + 39613516 39613900 L1PA5 6144 + 5754 6138 77400 384 chain 25742 chr6 171115067 + 39627249 39627622 THE1C 375 + 0 375 101114 81 1 2 35 0 1 67 0 1 95 7 6 45 16 19 5 3 0 18 chain 5325 chr6 171115067 + 39639845 39639912 MER6A 605 + 412 479 191772 67 chain 46012 chr6 171115067 + 39645315 39645803 L1HS 6032 - 8 496 62034 488 chain 26875 chr6 171115067 + 39645805 39646090 L1HS 6032 + 5246 5531 96719 285 chain 21677 chr6 171115067 + 39680470 39680741 L1PA6 6164 + 5896 6162 121479 6 0 1 253 6 0 6 chain 35642 chr6 171115067 + 39691236 39691671 L1PA7 6471 + 6030 6461 75349 72 4 0 359 chain 536146 chr6 171115067 + 39704181 39710341 L1PA4 6152 + 0 6152 3425 824 0 3 168 0 1 1379 0 1 2016 30 4 283 0 11 575 1 3 181 2 1 382 0 1 65 2 1 104 0 1 148 chain 13827 chr6 171115067 + 39716033 39716247 MER4A 717 - 260 686 145151 39 8 48 82 3 0 17 7 182 58 chain 11660 chr6 171115067 + 39720307 39720449 MER51B 395 + 4 202 153639 85 0 56 57 chain 14488 chr6 171115067 + 39720987 39721171 MER41B 635 - 420 607 142921 48 0 2 38 1 2 97 chain 7033 chr6 171115067 + 39723078 39723364 L1ME1 1623 - 100 384 177232 31 7 0 17 166 171 65 chain 106398 chr6 171115067 + 39729028 39730638 L1PA8A 6298 - 7 1298 35154 289 0 1 28 315 0 97 5 0 304 0 2 79 0 2 44 4 0 445 chain 71439 chr6 171115067 + 39734561 39735402 L1PA5 6144 - 689 1514 47726 161 0 1 353 18 1 309 chain 58971 chr6 171115067 + 39735402 39736074 L1PA5 6144 + 5461 6134 53414 349 1 2 322 chain 16066 chr6 171115067 + 39781818 39782079 MER30 238 + 0 235 138162 105 11 0 8 22 0 13 3 13 60 3 0 36 chain 3927 chr6 171115067 + 39788543 39788595 MIR 256 + 110 159 208454 37 3 0 12 chain 25624 chr6 171115067 + 39884844 39885212 THE1C 375 - 0 374 101607 26 1 0 141 21 25 19 2 1 11 6 10 141 chain 25751 chr6 171115067 + 39938802 39939144 THE1A 353 + 0 340 101079 15 2 0 32 0 1 42 5 4 246 chain 116780 chr6 171115067 + 39939160 39940723 THE1A-int 1579 + 4 1574 32195 16 6 8 116 0 3 291 8 19 8 9 0 10 21 21 114 36 35 11 0 1 13 21 22 515 1 0 367 chain 114062 chr6 171115067 + 40031146 40032393 L1PA3long 6157 - 0 1251 33086 849 0 4 398 chain 62809 chr6 171115067 + 40032393 40033087 L1PA3long 6157 + 4203 4897 51295 694 chain 30467 chr6 171115067 + 40039201 40039760 L1PB1 5432 - 55 594 83493 7 1 0 20 7 4 15 15 14 6 9 0 32 1 0 34 1 0 9 2 1 14 1 3 50 2 0 9 11 7 6 1 0 8 1 0 20 24 20 14 3 7 90 1 4 145 chain 361775 chr6 171115067 + 40058184 40062509 L1PA5 6144 - 12 4446 11321 135 1 8 131 1 37 15 1 2 118 0 2 295 4 7 84 1 5 122 0 1 224 2 1 114 1 0 42 0 2 13 6 5 81 3 0 185 0 3 62 0 1 46 0 2 40 0 10 252 8 10 53 0 3 34 0 3 11 2 0 21 0 2 222 1 4 8 0 1 27 1 6 8 0 1 51 8 7 355 0 2 88 0 11 9 1 0 24 0 4 584 0 2 94 0 4 68 0 2 23 1 0 31 2 1 29 1 0 33 0 2 264 2 0 140 0 5 142 chain 42699 chr6 171115067 + 40067135 40067665 L1PA7 6471 + 5931 6468 65776 251 0 3 35 4 8 240 chain 35215 chr6 171115067 + 40073413 40073825 L1PA3long 6157 - 5 423 75904 114 11 13 117 0 4 170 chain 7372 chr6 171115067 + 40150652 40150783 L1PB 1623 - 1399 1525 174958 33 12 9 11 0 1 53 1 0 5 1 0 10 1 0 4 chain 7781 chr6 171115067 + 40152285 40152404 L1PB1 5432 + 5309 5420 172411 18 2 0 5 1 0 13 2 0 25 1 0 21 1 0 13 1 0 16 chain 4724 chr6 171115067 + 40183200 40183285 L1MA4A 3247 + 3044 3128 198231 50 17 16 18 chain 237850 chr6 171115067 + 40205124 40208436 L1PA14 3548 + 90 3407 16891 58 5 0 69 1 0 17 2 1 33 2 0 23 11 14 365 7 21 115 0 1 169 14 18 45 10 10 341 0 1 94 0 3 2 6 0 19 0 8 364 4 3 87 7 1 4 0 1 232 8 18 221 1 0 87 2 1 152 1 0 218 0 1 13 21 21 12 2 0 30 2 1 16 9 5 102 32 26 4 1 0 84 1 0 58 3 11 42 14 9 38 4 2 12 1 0 5 1 0 9 chain 24106 chr6 171115067 + 40212946 40213203 L1PA2 6032 - 444 701 109712 257 chain 41148 chr6 171115067 + 40213203 40213654 L1PA2 6032 + 5579 6030 67719 451 chain 3308 chr6 171115067 + 40220949 40221020 MER96B 391 + 51 134 218817 28 20 32 23 chain 5378 chr6 171115067 + 40239126 40239280 LTR34 700 + 553 691 191210 24 22 9 17 40 38 19 1 0 31 chain 4154 chr6 171115067 + 40356012 40356062 MIRb 242 + 62 113 205188 6 0 1 44 chain 24022 chr6 171115067 + 40362389 40362767 THE1B 368 + 0 368 110208 169 1 0 29 41 51 47 1 0 4 0 1 6 19 0 61 chain 6716 chr6 171115067 + 40388514 40388762 LTR16C 481 - 0 274 179568 16 1 2 56 57 75 23 73 80 22 chain 6290 chr6 171115067 + 40404038 40404208 MER58A 224 + 45 216 182884 41 0 4 3 4 0 9 67 68 46 chain 17521 chr6 171115067 + 40441320 40441567 L1PA8 5853 - 0 244 134207 5 0 1 87 1 0 16 1 0 48 1 0 8 16 15 64 chain 4671 chr6 171115067 + 40471985 40472140 MIRb 242 + 61 215 198857 6 2 0 37 35 6 18 36 66 21 chain 156974 chr6 171115067 + 40532901 40534634 L1PA4 6152 + 4417 6152 23727 865 0 1 208 0 1 660 chain 25702 chr6 171115067 + 40545201 40545475 L1PA2 6032 - 30 304 101278 274 chain 4376 chr6 171115067 + 40545475 40545522 L1PA2 6032 + 5982 6029 202239 47 chain 6817 chr6 171115067 + 40611906 40611990 ERVL-int 1947 - 1104 1188 178827 84 chain 31787 chr6 171115067 + 40651439 40651795 L1PA3long 6157 + 5800 6157 81193 113 1 2 242 chain 24565 chr6 171115067 + 40740947 40741293 THE1B 368 - 0 368 107169 74 1 0 89 9 5 28 1 0 40 0 13 50 10 25 44 chain 3202 chr6 171115067 + 40765723 40765760 MIR 256 + 79 116 220897 37 chain 3802 chr6 171115067 + 40772716 40772759 MIR3 191 - 77 120 210364 43 chain 36275 chr6 171115067 + 40775189 40775724 MLT2A2 560 + 0 560 74529 28 3 0 17 13 16 30 3 0 78 25 41 157 5 6 29 0 11 147 chain 57743 chr6 171115067 + 40783669 40784312 SVA_B 1603 + 954 1599 54110 51 0 1 160 0 1 432 chain 79749 chr6 171115067 + 40791214 40792147 L1PA6 6164 + 5215 6150 43707 17 0 1 20 0 1 748 13 13 135 chain 40562 chr6 171115067 + 40814754 40815250 L1PA7 6471 + 5974 6470 68490 83 0 1 4 1 0 408 chain 3789 chr6 171115067 + 40815678 40815800 MER5A 189 - 0 161 210531 37 62 101 23 chain 34770 chr6 171115067 + 40825792 40826362 L1PB1 5432 - 12 584 76518 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 12 1 13 18 17 17 15 29 50 3 1 11 4 0 12 1 0 29 3 0 8 3 6 179 0 15 61 chain 42254 chr6 171115067 + 40866538 40867081 MER41A 554 + 0 546 66328 87 5 6 41 0 1 211 1 2 82 0 1 95 1 0 20 chain 160581 chr6 171115067 + 40908759 40911429 L1PB1 5432 + 3145 5430 23257 87 4 5 127 2 3 23 0 1 338 8 10 43 0 1 112 10 6 91 8 7 336 306 0 200 0 2 107 0 1 204 6 7 137 43 12 93 31 16 20 1 0 12 1 0 10 19 13 38 9 8 4 1 0 18 3 0 38 8 5 16 3 0 7 16 7 12 7 5 5 1 0 14 2 0 24 1 0 20 2 1 13 1 0 18 1 0 4 1 0 4 chain 53837 chr6 171115067 + 40916705 40917398 MER4E1 777 + 82 777 56461 217 16 13 4 0 1 62 0 1 156 19 22 219 chain 4435 chr6 171115067 + 40919802 40919853 MER5A 189 + 0 51 201518 51 chain 69950 chr6 171115067 + 40947734 40948639 L1P4 1494 - 390 1296 48409 60 0 3 227 5 0 26 0 2 74 0 1 17 3 4 135 11 9 239 0 1 108 chain 2690 chr6 171115067 + 40949143 40949192 L1MA4 2864 + 2746 2796 230335 18 8 9 23 chain 20089 chr6 171115067 + 40980054 40980413 THE1B 368 - 2 368 126861 54 2 3 6 2 0 61 6 14 10 43 41 42 16 15 6 0 3 111 chain 61822 chr6 171115067 + 40983454 40984146 L1PA5 6144 + 5447 6143 51981 269 0 2 275 0 2 148 chain 21830 chr6 171115067 + 41018711 41018994 AluSc 308 + 0 289 120898 19 5 10 65 0 1 194 chain 32962 chr6 171115067 + 41080592 41081099 MLT2A1 477 - 1 477 79270 19 1 0 18 1 2 15 2 0 9 25 0 7 1 0 21 6 0 179 5 4 29 1 5 27 0 1 73 7 6 61 chain 25957 chr6 171115067 + 41091697 41091973 AluYa5 310 + 24 299 100183 99 1 0 176 chain 33869 chr6 171115067 + 41095874 41096263 L1PA3long 6157 - 0 383 77830 140 7 0 193 0 1 49 chain 223356 chr6 171115067 + 41096303 41098751 L1PA2 6032 - 2 2454 17694 626 0 1 224 1 0 945 0 4 652 chain 59412 chr6 171115067 + 41140082 41140754 L1PA5 6144 - 0 672 53168 672 chain 28005 chr6 171115067 + 41141148 41152453 L1PA5 6144 + 5113 6129 92983 181 5 4 89 10714 425 15 0 1 161 1 3 5 2 0 132 chain 44003 chr6 171115067 + 41157393 41157955 MER61E 571 - 11 571 64201 30 1 0 9 0 1 259 4 0 37 0 2 222 chain 36650 chr6 171115067 + 41182431 41183043 LTR10A 586 - 35 586 74025 42 72 34 128 2 5 59 1 2 44 14 15 23 33 5 194 chain 24100 chr6 171115067 + 41185927 41186201 L1PA7 6471 - 520 794 109740 274 chain 41257 chr6 171115067 + 41186201 41186689 L1PA7 6471 + 5971 6461 67584 155 3 5 330 chain 306941 chr6 171115067 + 41211316 41214792 L1PA5 6144 + 2650 6129 13133 2615 0 1 41 0 1 66 0 2 614 1 0 139 chain 3380 chr6 171115067 + 41234832 41234963 LTR37A 408 - 52 182 217496 36 76 75 19 chain 47183 chr6 171115067 + 41260109 41260660 MER41A 554 - 0 554 61060 276 0 3 275 chain 79323 chr6 171115067 + 41264817 41265880 MER11A 1151 - 0 1145 43896 39 1 0 27 1 0 87 9 8 95 1 33 19 0 27 69 0 4 37 3 4 11 6 9 377 0 11 66 1 0 143 1 9 70 chain 16127 chr6 171115067 + 41265895 41266107 MSTB 430 + 213 430 137974 89 1 6 122 chain 6830 chr6 171115067 + 41270216 41270299 U6 107 - 13 96 178719 83 chain 20538 chr6 171115067 + 41322765 41323006 L1PA5 6144 + 5903 6144 125515 241 chain 21118 chr6 171115067 + 41328806 41329143 MSTA 426 + 55 426 123493 99 0 6 56 8 0 10 29 57 17 9 17 109 chain 24151 chr6 171115067 + 41399128 41399413 AluSp 311 + 0 287 109467 91 0 3 38 1 0 155 chain 29446 chr6 171115067 + 41404073 41404383 AluYf4 310 - 0 310 86871 310 chain 67674 chr6 171115067 + 41447647 41449314 Tigger1 2417 + 655 1567 49373 100 0 2 41 327 0 164 329 0 141 0 9 22 7 8 324 111 0 101 chain 29204 chr6 171115067 + 41572458 41572771 AluYb8 318 + 0 313 88026 313 chain 77882 chr6 171115067 + 41584042 41584935 SVA_D 2077 + 731 2077 44574 30 0 40 25 0 122 50 0 57 192 5 229 253 0 10 338 chain 23245 chr6 171115067 + 41592386 41592665 AluSc 308 - 17 299 114462 103 0 3 176 chain 24271 chr6 171115067 + 41615513 41615808 AluY 311 + 15 310 108841 103 1 0 8 0 1 40 1 0 94 0 1 48 chain 29755 chr6 171115067 + 41637379 41637904 L1PB1 5432 - 5 499 85631 5 2 0 18 1 0 13 1 0 21 1 0 24 3 1 14 9 7 27 13 1 16 1 0 44 1 0 15 2 1 53 2 1 7 2 0 3 2 0 10 1 0 12 1 0 4 27 27 170 chain 39108 chr6 171115067 + 41686650 41687185 MER1A 529 + 0 529 70590 82 12 0 10 0 4 347 22 24 62 chain 6345 chr6 171115067 + 41688551 41688633 MER1A 529 + 361 443 182426 82 chain 25074 chr6 171115067 + 41713287 41713586 AluSp 311 - 12 311 104436 299 chain 22075 chr6 171115067 + 41777936 41778252 AluSq10 312 + 0 303 119905 125 0 3 5 22 10 63 1 2 89 5 0 6 chain 15658 chr6 171115067 + 41779083 41779299 MER44A 345 + 114 345 139406 61 0 2 6 1 12 30 0 3 19 1 0 98 chain 25517 chr6 171115067 + 41779819 41780116 AluSp 311 - 14 311 102148 297 chain 24032 chr6 171115067 + 41792167 41792456 AluSp 311 + 1 294 110156 119 1 0 17 0 5 152 chain 23553 chr6 171115067 + 41806502 41806863 L1PBa 3878 + 2210 2583 112833 22 0 1 36 0 1 105 43 53 37 1 0 36 1 2 80 chain 12441 chr6 171115067 + 41809429 41809956 Ricksha_0 1343 + 0 213 150492 32 363 49 132 chain 3648 chr6 171115067 + 41840141 41840181 SVA_F 1814 + 375 415 212827 40 chain 29471 chr6 171115067 + 41886403 41886717 AluYb8 318 + 0 311 86748 304 3 0 7 chain 22625 chr6 171115067 + 41939285 41939575 AluSc 308 - 16 308 117454 128 14 16 148 chain 22814 chr6 171115067 + 41945834 41946124 AluY 311 + 4 297 116510 121 1 2 101 9 11 58 chain 29023 chr6 171115067 + 41953362 41953666 AluYa5 310 - 6 310 88889 304 chain 15782 chr6 171115067 + 41961831 41962075 Tigger3a 397 + 35 337 139013 40 30 89 12 1 0 161 chain 24485 chr6 171115067 + 41966422 41966715 AluSp 311 - 17 310 107629 293 chain 26280 chr6 171115067 + 41968302 41968602 AluSp 311 - 9 311 98902 284 0 2 16 chain 25775 chr6 171115067 + 41981821 41982133 AluYf4 310 + 0 310 100992 126 2 0 47 0 1 4 1 0 132 chain 8639 chr6 171115067 + 41986145 41986240 U6 107 - 0 95 167541 95 chain 24165 chr6 171115067 + 42021028 42021326 AluSq2 311 + 10 307 109402 69 1 0 228 chain 6679 chr6 171115067 + 42026697 42026817 LTR8 732 - 107 224 179831 78 24 21 18 chain 25241 chr6 171115067 + 42046583 42046874 AluSz 310 + 6 297 103526 291 chain 7706 chr6 171115067 + 42053732 42053878 MLT1A0 366 + 156 326 172896 39 37 61 70 chain 24179 chr6 171115067 + 42064654 42064940 AluSg7 307 + 9 296 109326 122 0 1 164 chain 12493 chr6 171115067 + 42107372 42107544 MER30 238 + 58 235 150272 41 3 1 9 3 10 116 chain 22249 chr6 171115067 + 42115560 42115863 AluSp 311 + 9 308 119120 60 5 0 68 16 16 115 0 1 39 chain 20590 chr6 171115067 + 42117678 42117931 AluY 311 + 0 259 125331 19 4 9 104 0 1 126 chain 3228 chr6 171115067 + 42167019 42167066 ORSL 269 - 175 245 220450 14 1 0 7 0 24 25 chain 13843 chr6 171115067 + 42170757 42170955 MER30 238 + 18 238 145088 86 9 0 10 4 32 49 1 4 39 chain 4367 chr6 171115067 + 42173329 42173379 MADE1 96 + 45 95 202359 50 chain 24475 chr6 171115067 + 42191495 42191781 AluY 311 + 16 302 107672 116 0 1 6 1 0 163 chain 63897 chr6 171115067 + 42252778 42253479 L1PA2 6032 - 1556 2261 50930 7 0 6 49 1 0 642 1 0 1 chain 144161 chr6 171115067 + 42253479 42255043 L1PA2 6032 + 4466 6032 25448 296 2 4 1266 chain 5136 chr6 171115067 + 42278009 42278112 MER3 215 - 109 214 193714 11 1 0 46 3 4 13 14 16 15 chain 77369 chr6 171115067 + 42291911 42292990 L1PA17 2846 + 1626 2693 44791 46 0 3 208 2 3 211 0 1 403 4 0 16 6 0 16 1 0 51 10 7 9 1 0 32 9 8 10 6 5 38 chain 9162 chr6 171115067 + 42331443 42331687 MLT1C 463 + 135 448 164754 15 2 0 31 93 161 57 6 9 40 chain 26255 chr6 171115067 + 42379738 42380038 AluSp 311 - 12 311 98999 172 1 0 127 chain 24250 chr6 171115067 + 42386004 42386299 AluSq2 311 - 9 302 108945 18 2 0 275 chain 24776 chr6 171115067 + 42429780 42430073 AluY 311 + 5 299 106018 50 0 1 243 chain 99679 chr6 171115067 + 42433786 42434910 SVA_D 2077 + 328 1824 36861 562 0 269 28 0 1 25 0 2 9 0 2 77 0 98 423 chain 34536 chr6 171115067 + 42438274 42438703 MER41-int 2638 + 2206 2636 76854 301 0 2 47 1 0 80 chain 38322 chr6 171115067 + 42462561 42463281 L1PB1 5432 - 2 687 71684 4 1 0 9 1 0 12 2 1 12 1 0 9 14 13 24 2 0 14 3 1 5 1 0 18 9 0 12 3 0 16 2 1 20 2 1 21 1 0 16 2 1 51 17 11 14 1 0 9 1 0 18 6 1 11 6 7 221 8 12 49 1 9 12 9 0 50 chain 125207 chr6 171115067 + 42464733 42466469 L1PBa 3878 - 133 3706 29320 8 2 0 21 3 2 237 0 2 197 5 4 54 3 0 170 5 1 57 0 2 15 6 1 104 2 1 68 0 2 38 0 1 49 0 4 467 0 24 109 1 2 31 43 1861 41 chain 10731 chr6 171115067 + 42481617 42481764 AluJb 308 + 156 307 157274 69 3 15 6 8 0 61 chain 45292 chr6 171115067 + 42483630 42484415 L1PB1 5432 + 4664 5404 62726 133 2 1 212 7 9 79 8 7 9 26 0 24 1 0 4 3 2 12 23 17 36 3 10 12 8 7 42 1 0 20 1 0 4 12 4 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 chain 17644 chr6 171115067 + 42492216 42492553 THE1D 372 - 14 372 133859 18 1 0 91 5 11 14 1 0 30 39 43 19 13 17 35 0 10 35 11 10 25 chain 4234 chr6 171115067 + 42514490 42514540 MER53 195 - 0 50 204114 50 chain 63552 chr6 171115067 + 42521793 42522693 LTR12D 1347 + 0 1347 51219 203 0 36 57 1 37 38 0 1 63 3 154 105 0 17 127 30 28 31 3 0 7 3 6 59 12 212 34 6 14 118 chain 3639 chr6 171115067 + 42535925 42536118 L1MB8 1703 - 42 175 212978 18 6 8 11 120 58 38 chain 5495 chr6 171115067 + 42594223 42594286 MER34A 573 - 497 561 190098 13 0 1 50 chain 3362 chr6 171115067 + 42632670 42632707 MIRb 242 + 106 143 217803 37 chain 23953 chr6 171115067 + 42645808 42646079 AluY 311 + 16 288 110596 116 0 1 155 chain 26030 chr6 171115067 + 42648622 42648924 AluY 311 + 4 306 99898 27 1 0 101 0 1 173 chain 16411 chr6 171115067 + 42649828 42650102 L1MB3 1562 + 1269 1524 137179 37 7 8 37 1 0 72 27 10 5 2 0 86 chain 3527 chr6 171115067 + 42651611 42651652 Tigger4a 237 + 194 235 214934 41 chain 123937 chr6 171115067 + 42653815 42655248 SVA_B 1603 - 1 1597 29722 10 2 0 563 0 40 97 0 40 112 0 40 179 0 39 429 8 10 13 4 8 16 chain 72083 chr6 171115067 + 42701544 42702458 LTR13A 966 - 0 945 47445 65 1 5 72 0 2 197 0 21 475 0 1 32 21 23 4 0 1 47 chain 68923 chr6 171115067 + 42705154 42706031 L1MA3 4352 + 3218 4093 48848 670 4 0 16 6 7 20 0 1 161 chain 25285 chr6 171115067 + 42715533 42715830 AluSp 311 - 1 300 103288 92 0 2 205 chain 11396 chr6 171115067 + 42718648 42718803 L1PA8 5853 - 3 156 154715 89 4 3 17 3 2 42 chain 15971 chr6 171115067 + 42776823 42777025 L1PA7 6471 - 140 348 138452 15 2 0 8 3 1 33 0 10 141 chain 22328 chr6 171115067 + 42791703 42791993 AluSc5 308 + 10 305 118786 113 13 18 164 chain 25346 chr6 171115067 + 42815587 42815882 AluY 311 + 2 298 102977 130 0 1 165 chain 25921 chr6 171115067 + 42845924 42846213 AluY 311 + 8 303 100330 97 0 5 16 0 1 176 chain 78171 chr6 171115067 + 42861408 42862404 LTR5B 1012 - 0 1012 44428 428 0 1 94 1 0 109 16 15 223 1 14 111 0 4 13 chain 328930 chr6 171115067 + 42863150 42868087 HERVK-int 6823 - 228 4984 12239 9 5 0 11 5 0 6 1 0 7 2 1 15 34 25 13 1 0 4 9 8 21 4 2 8 1 0 8 4 0 4 2 0 10 12 8 8 1 0 4 1 0 6 8 3 29 2 0 12 269 156 17 1 0 11 17 11 23 12 9 73 8 6 4 1 0 6 3 0 51 1 0 124 2 1 33 1 0 101 1 0 22 1 0 192 11 10 9 1 0 347 5 3 4 0 1 1724 0 1 552 0 1 4 1 0 96 32 33 206 71 73 424 25 22 36 1 2 53 2 1 92 chain 76225 chr6 171115067 + 42870370 42871367 LTR5B 1012 - 0 1012 45351 110 1 0 106 8 11 201 0 1 95 1 0 108 16 15 23 1 2 198 1 14 128 chain 21293 chr6 171115067 + 42886017 42886295 AluSg4 309 + 13 283 122889 24 7 0 168 8 7 71 chain 24496 chr6 171115067 + 42889147 42889453 AluSc5 308 - 2 308 107567 155 1 4 6 3 0 141 chain 13286 chr6 171115067 + 42901921 42902069 LTR47A 437 - 289 437 147148 148 chain 5643 chr6 171115067 + 42918981 42919072 MER51B 395 - 7 115 188635 61 0 1 8 8 24 14 chain 25064 chr6 171115067 + 42920416 42920787 MER57-int 2662 - 331 703 104490 100 54 55 217 chain 49620 chr6 171115067 + 42922075 42922647 LTR10C 591 + 10 586 59304 285 0 1 38 0 1 175 0 2 74 chain 6526 chr6 171115067 + 42925339 42925417 MER4A1 472 - 278 356 181053 78 chain 25406 chr6 171115067 + 42945580 42945881 AluSp 311 - 11 310 102654 172 5 3 124 chain 4708 chr6 171115067 + 42950273 42950354 L1PB1 5432 - 27 105 198403 5 0 2 6 1 0 22 1 0 24 2 0 14 1 0 5 chain 20059 chr6 171115067 + 42963619 42963881 AluYf4 310 - 29 310 126941 6 0 2 113 14 28 6 0 3 123 chain 23787 chr6 171115067 + 42965237 42965573 AluSq2 311 - 0 301 111551 179 35 0 122 chain 4893 chr6 171115067 + 43001837 43001908 L1MB8 1703 - 119 194 196343 57 2 6 12 chain 24852 chr6 171115067 + 43009471 43009761 AluSg 306 + 10 300 105615 290 chain 26547 chr6 171115067 + 43032803 43033111 AluSp 311 - 3 311 97851 308 chain 22826 chr6 171115067 + 43068696 43068966 AluSp 311 + 8 295 116464 166 5 22 99 chain 28522 chr6 171115067 + 43099117 43099490 THE1B 368 - 0 368 91091 75 1 0 95 1 0 6 2 0 11 10 9 172 chain 4764 chr6 171115067 + 43177272 43177332 L1MC4 1079 - 201 261 197762 60 chain 87321 chr6 171115067 + 43207228 43208263 LTR5A 1029 - 0 1029 40639 521 4 0 287 0 8 34 0 1 31 1 0 4 14 0 126 0 4 13 chain 4047 chr6 171115067 + 43217621 43217707 ORSL 269 - 172 268 206674 37 1 0 9 22 33 17 chain 24967 chr6 171115067 + 43257786 43258193 Tigger2 2703 - 0 417 104976 18 4 1 10 59 58 36 0 2 32 2 0 84 0 13 145 0 1 17 chain 25495 chr6 171115067 + 43337935 43338314 LTR7B 505 + 0 492 102244 105 0 10 55 21 87 32 2 1 21 0 41 87 16 15 26 2 0 12 chain 41200 chr6 171115067 + 43358524 43359250 LTR71B 605 + 0 605 67647 111 3 4 18 20 37 14 1 0 20 0 12 48 1 0 90 6 0 23 11 12 93 144 0 123 chain 37422 chr6 171115067 + 43360888 43361342 LTR2 463 + 7 463 72935 355 3 4 49 0 1 47 chain 4544 chr6 171115067 + 43361436 43361488 LTR18B 584 + 340 392 200305 52 chain 45815 chr6 171115067 + 43367570 43368168 LTR71B 605 + 0 605 62212 135 5 16 34 9 14 134 0 1 11 12 2 258 chain 31943 chr6 171115067 + 43378703 43379067 L1PA7 6471 + 6097 6461 80951 364 chain 1338 chr6 171115067 + 43390339 43390562 Tigger1 2417 + 961 1184 122243 223 chain 118489 chr6 171115067 + 43392364 43393726 SVA_C 1631 + 0 1613 31622 13 8 8 187 1 0 238 0 116 84 0 40 208 0 96 6 3 0 7 0 1 14 1 0 366 0 3 226 chain 924 chr6 171115067 + 43393765 43393919 Tigger1 2417 + 1588 1747 122243 16 7 5 42 14 21 75 chain 22871 chr6 171115067 + 43435068 43435438 THE1B 368 + 0 368 116225 108 26 27 42 34 26 11 0 4 89 6 7 54 chain 24949 chr6 171115067 + 43459023 43459316 AluSp 311 - 10 300 105061 11 3 0 279 chain 2497 chr6 171115067 + 43464949 43464980 MER20 218 - 144 174 233154 24 1 0 6 chain 21346 chr6 171115067 + 43503309 43503568 AluY 311 + 0 300 122702 15 0 44 71 3 0 170 chain 24930 chr6 171115067 + 43525549 43525843 AluSp 311 + 0 293 105160 26 1 0 267 chain 132432 chr6 171115067 + 43547640 43549284 SVA_F 1814 - 0 1479 27537 10 2 0 530 127 0 87 1 0 83 49 0 95 16 16 27 3 18 68 1 0 545 chain 4094 chr6 171115067 + 43548182 43548242 SVA_F 1814 - 716 776 142573 60 chain 3093 chr6 171115067 + 43548242 43548309 SVA_F 1814 - 649 716 72343 67 chain 2262 chr6 171115067 + 43548480 43548529 SVA_F 1814 - 901 951 72343 25 0 1 24 chain 12342 chr6 171115067 + 43553119 43553323 MER21B 843 - 613 839 150856 22 1 0 61 1 2 12 8 28 20 10 12 69 chain 23122 chr6 171115067 + 43553943 43554241 AluSq10 312 + 10 302 115034 123 9 7 149 4 0 13 chain 27411 chr6 171115067 + 43556570 43556874 AluYk4 311 - 8 311 94932 177 1 0 126 chain 5295 chr6 171115067 + 43574696 43574809 L1MB8 1703 - 149 256 192065 22 14 9 25 5 0 11 2 5 9 0 1 25 chain 16371 chr6 171115067 + 43594373 43594577 AluSp 311 + 57 294 137279 139 1 34 64 chain 20792 chr6 171115067 + 43600949 43601197 AluSp 311 - 52 300 124634 248 chain 35153 chr6 171115067 + 43610567 43611016 LTR2 463 - 0 463 75984 88 14 15 198 0 5 99 0 7 14 0 1 36 chain 78359 chr6 171115067 + 43626722 43631900 Tigger1 2417 - 504 2362 44341 27 3 0 152 1 0 54 1128 0 89 335 10 98 15 17 5 0 1 39 0 1 74 46 6 303 0 3 21 820 195 33 0 2 138 1677 463 74 25 32 21 chain 4480 chr6 171115067 + 43646066 43646119 MER5B 177 - 124 177 201016 53 chain 3861 chr6 171115067 + 43671442 43671485 MIR 256 + 104 147 209435 43 chain 28714 chr6 171115067 + 43680924 43681230 AluYb8 318 + 0 307 90276 176 0 1 130 chain 3028 chr6 171115067 + 43763794 43763830 MER53 195 - 127 163 224426 36 chain 30800 chr6 171115067 + 43776596 43777131 L1MB3 1562 - 395 952 82862 72 6 0 64 11 10 35 76 100 113 1 0 19 17 23 121 chain 46119 chr6 171115067 + 43829991 43830520 L1PA5 6144 - 0 529 61929 529 chain 54412 chr6 171115067 + 43850692 43851339 L1PA5 6144 + 5498 6143 56086 99 0 1 533 3 0 12 chain 23543 chr6 171115067 + 43893695 43893993 AluSp 311 - 11 311 112891 28 7 8 186 0 1 77 chain 3630 chr6 171115067 + 43911267 43911309 MIR 256 + 105 147 213147 42 chain 4335 chr6 171115067 + 43933687 43933734 MER63A 208 + 103 150 202779 47 chain 111545 chr6 171115067 + 43965653 43967018 LTR12C 1709 + 0 1709 33799 282 12 11 45 0 43 269 0 278 104 0 20 22 0 2 36 1 0 6 2 0 53 0 2 51 0 4 393 5 4 84 chain 18325 chr6 171115067 + 43985441 43985704 AluSc 308 + 20 257 131998 15 39 13 209 chain 23503 chr6 171115067 + 44099191 44099461 AluSc 308 + 16 286 113114 270 chain 31309 chr6 171115067 + 44153080 44153507 LTR10F 562 + 0 512 81973 105 0 1 47 20 100 13 5 11 198 2 0 37 chain 25339 chr6 171115067 + 44186517 44186812 AluSp 311 + 0 301 103026 77 0 6 218 chain 23488 chr6 171115067 + 44204310 44204611 AluSp 311 - 8 296 113183 22 14 1 265 chain 24449 chr6 171115067 + 44261723 44262007 AluSp 311 - 16 300 107811 284 chain 8885 chr6 171115067 + 44283096 44283207 L1MB8 1703 - 147 258 166208 111 chain 34479 chr6 171115067 + 44284805 44285190 SVA_A 1864 + 1460 1862 76943 112 0 17 273 chain 75596 chr6 171115067 + 44295784 44296746 LTR5_Hs 974 - 0 974 45718 100 23 21 19 8 15 132 1 5 114 0 1 99 0 1 177 0 1 289 chain 50592 chr6 171115067 + 44314513 44315116 L1PA7 6471 + 5861 6465 58585 174 0 1 285 0 2 7 2 0 135 chain 10179 chr6 171115067 + 44318933 44319123 MER2 342 + 143 321 159717 69 5 0 40 17 17 19 17 10 23 chain 16338 chr6 171115067 + 44351197 44351402 MER6A 605 - 27 233 137374 116 0 1 89 chain 13670 chr6 171115067 + 44353907 44354132 L1MA3 4352 + 4134 4352 145702 45 1 0 8 0 1 70 2 0 24 8 6 29 1 0 8 7 5 22 chain 63800 chr6 171115067 + 44369393 44370077 L1PA3long 6157 - 0 684 51099 684 chain 28995 chr6 171115067 + 44380514 44380818 AluYa5 310 - 6 310 89009 304 chain 110490 chr6 171115067 + 44385734 44386971 L1PA4 6152 - 1 1236 34075 259 1 0 403 0 3 192 5 1 377 chain 11871 chr6 171115067 + 44389434 44389617 MER2 342 + 148 336 152736 126 22 27 35 chain 3056 chr6 171115067 + 44415748 44415780 tRNA-Gly-GGA 38 - 0 32 223898 32 chain 5108 chr6 171115067 + 44434628 44434745 MER97c 529 + 395 516 193998 42 45 49 30 chain 3743 chr6 171115067 + 44461497 44461539 MADE1 96 - 50 92 211286 42 chain 3129 chr6 171115067 + 44503931 44503964 MER103C 291 + 131 164 222385 33 chain 33476 chr6 171115067 + 44512310 44512772 MER4A1 472 + 0 472 78449 128 33 42 153 0 1 148 chain 6306 chr6 171115067 + 44521391 44521469 MER20 218 + 90 171 182742 69 0 3 9 chain 542108 chr6 171115067 + 44551909 44558045 L1PA5 6144 - 6 6144 2486 837 0 2 4 0 1 219 0 1 452 1 0 944 3 0 514 0 1 416 0 1 182 0 1 2031 7 7 57 1 0 468 chain 4182 chr6 171115067 + 44569493 44569542 MADE1 96 + 47 96 204796 49 chain 13885 chr6 171115067 + 44647137 44647289 L1PA5 6144 + 5816 5968 144969 152 chain 64178 chr6 171115067 + 44662854 44663556 L1PA2 6032 - 1 703 50922 151 1 0 19 0 1 531 chain 9049 chr6 171115067 + 44688709 44688871 Tigger4a 237 - 0 200 165322 34 1 0 6 18 19 26 7 45 70 chain 22249 chr6 171115067 + 44709214 44709475 AluYk4 311 + 39 295 119125 245 5 0 11 chain 80411 chr6 171115067 + 44713053 44714401 L1PA7 6471 - 5 1046 43426 134 0 1 200 11 3 93 2 0 13 6 0 15 321 0 39 0 24 298 2 3 15 1 5 198 chain 523400 chr6 171115067 + 44715199 44721315 L1PA4 6152 + 11 6152 4825 1183 13 21 1101 0 4 320 0 1 524 0 1 99 0 2 644 2 1 116 0 3 720 0 1 1286 0 1 102 0 5 6 chain 75434 chr6 171115067 + 44721320 44722165 L1PA5 6144 + 5284 6128 45799 714 1 0 130 chain 540283 chr6 171115067 + 44722227 44728238 L1PA3long 6157 - 8 6147 2777 3828 0 2 1415 12 137 614 0 1 142 chain 320144 chr6 171115067 + 44730554 44734316 L1PA6 6164 - 17 3791 12590 131 1 16 131 10 0 553 0 4 16 0 4 583 1 2 28 1 0 30 2 0 183 0 1 170 0 1 323 1 0 3 3 0 27 1 2 243 1 0 415 0 2 62 0 1 25 8 8 810 chain 15065 chr6 171115067 + 44737713 44737890 L1PA7 6471 - 1440 1616 141122 46 1 0 130 chain 117547 chr6 171115067 + 44737890 44739275 L1PA7 6471 + 5020 6421 31945 116 7 16 450 0 4 8 0 3 804 chain 26827 chr6 171115067 + 44741981 44742368 THE1D 372 + 0 370 96885 75 19 0 60 6 10 43 0 2 141 7 3 36 chain 18090 chr6 171115067 + 44742419 44742736 L1MA1 4479 - 289 588 132617 18 35 25 5 1 0 35 2 0 23 7 6 124 6 3 5 1 0 55 chain 28858 chr6 171115067 + 44816957 44817263 AluYa5 310 - 5 310 89629 187 1 0 118 chain 557311 chr6 171115067 + 44838371 44844402 L1PA2 6032 + 0 6029 578 6019 2 0 10 chain 332698 chr6 171115067 + 44846364 44850459 L1P3 4156 + 0 4139 12100 179 7 8 64 12 11 8 1 0 49 6 5 1070 5 8 850 0 4 112 0 19 71 0 7 51 0 8 105 0 1 28 1 3 18 0 1 415 0 3 235 1 0 167 1 0 22 1 0 24 0 4 201 13 13 343 9 6 26 chain 551381 chr6 171115067 + 44852367 44858503 L1PA3long 6157 + 4 6155 1268 706 0 1 25 0 1 798 1 0 1860 0 4 1411 0 5 517 0 3 48 0 1 623 0 1 147 chain 29575 chr6 171115067 + 44858514 44858876 L1PA7 6471 + 6086 6470 86297 17 0 7 118 0 14 70 1 2 156 chain 132613 chr6 171115067 + 44860968 44862441 L1PA3long 6157 - 0 1482 27497 5 0 2 222 5 11 1006 0 1 235 chain 534487 chr6 171115067 + 44867780 44873912 L1PA4 6152 + 6 6143 3653 20 0 1 1007 1 0 1291 8 0 201 0 2 1360 0 1 251 0 12 1123 8 9 464 4 0 150 1 0 105 1 2 66 0 1 71 chain 28029 chr6 171115067 + 44896350 44896648 AluYd8 298 + 0 298 92896 298 chain 19432 chr6 171115067 + 44915717 44915933 L1PA5 6144 - 1180 1396 128089 216 chain 104320 chr6 171115067 + 44915933 44917125 L1PA5 6144 + 4939 6132 35664 917 0 1 275 chain 3656 chr6 171115067 + 44933082 44933135 Charlie17a 212 - 158 212 212661 40 3 4 10 chain 29489 chr6 171115067 + 44939048 44939425 THE1C 375 - 2 375 86674 251 3 0 14 1 0 108 chain 5323 chr6 171115067 + 44939439 44939505 THE1C-int 1605 - 14 82 191797 33 0 1 19 0 1 14 chain 12046 chr6 171115067 + 44941408 44941556 THE1C 375 - 20 167 152004 5 1 0 142 chain 14541 chr6 171115067 + 44941566 44941738 THE1C 375 - 196 368 142753 172 chain 283401 chr6 171115067 + 44984085 44987224 L1PA3long 6157 - 0 3140 14441 128 0 3 623 8 7 2225 1 0 154 chain 3811 chr6 171115067 + 45010297 45010345 L1PA4 6152 - 0 53 210215 6 0 5 42 chain 103513 chr6 171115067 + 45022931 45024467 L1PB1 5432 + 3839 5321 35862 15 0 1 217 16 10 32 0 1 49 0 4 217 18 16 225 3 0 88 1 0 54 5 0 110 0 1 219 15 16 24 63 32 50 2 1 14 2 1 45 1 0 14 24 13 13 chain 78866 chr6 171115067 + 45026893 45027901 L1PA10 4194 + 3154 4150 44119 357 1 2 231 25 17 315 2 0 40 3 0 34 chain 556179 chr6 171115067 + 45030184 45036213 L1PA2 6032 + 0 6032 703 929 0 2 2129 0 1 756 1 0 1362 0 1 852 chain 26012 chr6 171115067 + 45098449 45098753 AluSp 311 - 7 311 99969 304 chain 250744 chr6 171115067 + 45110502 45114040 L1PB2 3958 + 268 3838 16198 61 0 1 22 0 6 13 0 2 81 9 6 30 0 3 210 20 26 268 7 6 22 0 3 23 0 2 210 0 2 4 1 0 49 5 6 147 35 36 89 2 0 54 14 16 105 18 19 98 0 38 80 4 5 118 17 18 87 2 0 115 18 1 17 0 2 197 8 12 346 1 0 355 0 4 24 2 0 51 1 0 19 7 1 61 2 0 12 4 0 89 2 0 77 1 0 54 9 8 11 0 1 62 2 0 22 1 0 63 chain 25906 chr6 171115067 + 45122995 45123464 MER87 546 - 33 546 100402 22 0 13 17 1 0 5 1 2 84 59 90 48 1 0 55 3 2 30 0 6 73 28 24 42 chain 3238 chr6 171115067 + 45125122 45125221 MER5B 177 - 6 104 220275 5 0 1 16 46 44 32 chain 4921 chr6 171115067 + 45131662 45131854 MER82 654 - 29 210 196038 9 6 0 4 8 0 42 92 95 31 chain 6709 chr6 171115067 + 45136015 45136149 Tigger4a 237 - 15 154 179620 31 20 21 20 9 13 54 chain 521152 chr6 171115067 + 45143800 45149612 L1PA3long 6157 + 0 6156 5040 152 0 1 102 0 1 485 0 1 19 10 143 1375 0 1 112 0 4 686 0 187 222 1 2 483 0 9 175 0 3 1144 0 3 846 chain 39783 chr6 171115067 + 45177859 45178478 MER4A1_ 611 + 3 611 69652 56 27 29 34 0 2 170 18 1 27 4 7 55 32 31 196 chain 3080 chr6 171115067 + 45183107 45183146 L1M2 1805 + 558 597 223317 39 chain 23636 chr6 171115067 + 45186184 45186478 AluSp 311 + 0 289 112381 125 8 3 161 chain 49863 chr6 171115067 + 45188509 45189113 L1PA6 6164 + 5544 6160 59109 17 0 10 404 1 2 5 1 0 62 0 2 114 chain 36194 chr6 171115067 + 45203466 45203971 MER9a3 513 + 0 513 74633 12 1 3 85 10 11 147 1 0 29 0 1 127 0 2 17 16 19 60 chain 361035 chr6 171115067 + 45204629 45208930 HERVK9-int 4720 + 334 4720 11340 1247 1 0 4 1 3 140 0 3 340 9 1 65 2 0 179 10 8 13 0 1 714 0 4 623 0 56 38 0 1 221 0 1 131 0 3 106 17 19 57 0 1 46 0 24 337 chain 39199 chr6 171115067 + 45208930 45209437 MER9a3 513 + 0 513 70455 19 3 1 90 0 1 147 1 0 29 0 1 19 0 4 123 1 2 7 0 2 68 chain 29510 chr6 171115067 + 45245656 45246040 L1PA7 6471 + 6103 6468 86602 157 0 3 47 20 0 149 2 0 9 chain 512429 chr6 171115067 + 45248844 45254989 L1PA4 6152 + 1 6152 5931 104 0 1 530 0 3 561 0 3 33 1 0 197 0 1 176 218 0 6 0 218 1071 12 5 299 2 0 50 0 2 472 5 7 955 1 0 96 1 0 509 0 5 750 0 1 96 chain 5544 chr6 171115067 + 45264710 45264794 L1PB1 5432 + 5341 5420 189618 5 2 0 24 1 0 22 1 0 12 1 0 16 chain 16910 chr6 171115067 + 45269869 45270196 L1PB1 5432 - 14 316 135824 6 0 1 7 1 0 13 1 0 21 1 0 22 2 0 17 1 0 4 2 0 30 13 1 16 6 5 38 1 0 16 2 1 52 2 0 9 4 1 12 1 4 4 1 0 22 chain 44968 chr6 171115067 + 45270656 45271256 L1PB1 5432 + 4110 4717 63090 11 1 2 62 1 10 5 3 0 307 6 5 114 3 0 36 0 4 51 chain 161595 chr6 171115067 + 45274396 45276321 L1P1 4361 + 4 1969 23114 222 14 30 64 0 1 693 3 2 198 0 11 222 6 4 110 0 12 220 0 2 37 0 1 136 chain 12924 chr6 171115067 + 45276335 45276489 L1PA5 6144 + 5990 6144 148534 154 chain 274593 chr6 171115067 + 45280274 45284042 L1PB1 5432 + 1718 5413 14945 116 0 1 27 11 3 49 0 4 49 2 0 60 0 1 422 6 10 35 5 0 5 6 0 86 0 3 148 0 1 91 8 5 849 0 4 39 4 6 199 3 0 7 10 15 402 0 2 123 13 18 111 0 4 13 2 0 259 4 3 209 65 17 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 20 9 17 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 22705 chr6 171115067 + 45452929 45453227 AluSp 311 - 7 300 117050 50 23 18 225 chain 28872 chr6 171115067 + 45527971 45528326 THE1B 368 - 0 368 89575 74 1 0 122 1 0 117 0 15 40 chain 4110 chr6 171115067 + 45547000 45547051 MIRb 242 - 106 157 205772 51 chain 5599 chr6 171115067 + 45592105 45592182 MADE1 96 + 0 93 189087 30 3 19 44 chain 5513 chr6 171115067 + 45613840 45613904 U6 107 + 0 64 189911 64 chain 556016 chr6 171115067 + 45637112 45643138 L1PA2 6032 - 3 6031 724 5964 3 5 59 chain 4387 chr6 171115067 + 45648604 45648683 MADE1 96 - 1 96 202109 41 17 33 21 chain 7633 chr6 171115067 + 45660518 45660998 L1PB1 5432 + 5260 5404 173332 21 1 0 20 19 7 19 327 8 11 2 0 24 1 0 21 1 0 13 chain 82969 chr6 171115067 + 45661783 45662733 L1PA4 6152 - 1 955 42311 220 0 3 633 7 8 90 chain 115329 chr6 171115067 + 45662733 45664027 L1PA4 6152 + 3891 5188 32670 489 0 1 489 1 0 4 8 11 303 chain 13183 chr6 171115067 + 45721237 45721406 L1PA8 5853 - 50 216 147535 43 1 0 19 2 1 58 1 0 45 chain 4315 chr6 171115067 + 45747639 45747743 X7C_LINE 204 + 56 160 203038 24 38 39 7 1 0 34 chain 6479 chr6 171115067 + 45769697 45769776 MER121 330 - 130 209 181404 79 chain 25879 chr6 171115067 + 45773431 45773791 THE1B 368 - 0 368 100533 75 1 0 129 6 13 43 1 0 63 2 7 25 2 0 13 chain 42661 chr6 171115067 + 45808443 45808950 L1PA7 6471 - 6 530 65829 83 0 1 254 0 1 38 0 15 132 chain 269797 chr6 171115067 + 45814858 45817814 L1PA3long 6157 - 0 2959 15188 1855 0 1 610 0 2 491 chain 25432 chr6 171115067 + 45874301 45874598 AluSp 311 - 14 311 102536 297 chain 30130 chr6 171115067 + 45961989 45962338 L1PA8A 6298 + 5942 6291 84386 349 chain 35882 chr6 171115067 + 45963970 45964363 L1PA2 6032 - 889 1282 75027 393 chain 81787 chr6 171115067 + 45964363 45965254 L1PA2 6032 + 5141 6032 42850 891 chain 29311 chr6 171115067 + 45967469 45967786 AluYb8 318 - 6 318 87510 180 5 0 132 chain 10962 chr6 171115067 + 45973352 45973656 MLT1A0 366 + 8 318 156356 21 39 40 68 87 89 23 15 18 51 chain 29759 chr6 171115067 + 45987141 45987453 AluYb9 318 + 0 312 85613 312 chain 17772 chr6 171115067 + 45993434 45993775 THE1D 372 + 4 353 133506 93 8 7 31 6 10 15 77 81 34 0 1 77 chain 112824 chr6 171115067 + 46037067 46038583 L1PA13 3608 + 1990 3479 33432 135 1 0 114 0 2 5 15 0 78 0 2 292 4 5 32 2 1 504 5 4 109 2 0 62 1 0 25 4 0 31 8 5 47 2 0 5 2 0 31 chain 272063 chr6 171115067 + 46050972 46054126 L1P1 4361 - 1178 4359 15075 1143 0 2 1331 1 16 72 0 11 30 5 4 572 chain 12162 chr6 171115067 + 46058916 46059184 L1MA8 2339 - 151 391 151565 24 3 0 24 0 1 18 73 52 27 3 0 13 0 1 19 1 0 55 2 0 6 chain 8700 chr6 171115067 + 46068456 46068569 LTR49 580 - 0 112 167191 71 1 0 41 chain 5699 chr6 171115067 + 46082440 46082517 MLT1B 390 + 314 390 188122 24 1 0 52 chain 2853 chr6 171115067 + 46086152 46086214 MER94 134 - 38 101 227810 22 18 19 22 chain 536471 chr6 171115067 + 46087206 46093317 L1PA5 6144 + 15 6138 3379 426 7 8 1058 0 1 765 0 1 223 0 1 1179 1 0 646 0 1 665 0 7 814 2 3 325 chain 176301 chr6 171115067 + 46098900 46100850 L1PA3long 6157 - 2 1963 21331 283 0 2 562 0 4 727 0 1 212 0 4 166 chain 52983 chr6 171115067 + 46130953 46131551 L1PA2 6032 - 1 782 57025 314 9 192 275 chain 47064 chr6 171115067 + 46131551 46132063 L1PA2 6032 + 4736 5248 60877 512 chain 20926 chr6 171115067 + 46164070 46164423 THE1B 368 - 0 368 124193 57 1 0 4 13 6 58 29 42 6 3 0 23 8 6 107 0 15 44 chain 133583 chr6 171115067 + 46179963 46181416 L1PA2 6032 - 0 1453 27305 1453 chain 84125 chr6 171115067 + 46181416 46182357 L1P1 4361 + 2383 3323 41846 782 3 2 156 chain 523181 chr6 171115067 + 46192527 46198629 L1PA5 6144 - 0 6144 4852 114 0 7 27 2 0 6 0 1 695 2 0 671 0 1 636 1 0 379 0 1 12 0 1 165 0 1 4 1 0 70 0 1 68 1 2 124 1 0 36 0 10 614 0 1 191 1 0 169 1 7 678 0 1 282 9 0 499 5 7 236 1 0 249 7 19 25 1 15 119 chain 4943 chr6 171115067 + 46209466 46209615 MIR 256 + 71 231 195763 45 77 88 27 chain 24576 chr6 171115067 + 46254457 46254754 AluSp 311 + 0 294 107098 132 3 0 162 chain 44267 chr6 171115067 + 46260461 46260982 L1PA7 6471 - 1 520 63863 161 1 0 179 8 7 172 chain 78892 chr6 171115067 + 46300056 46300944 L1PA3long 6157 - 8 899 44113 330 0 1 510 0 2 48 chain 12798 chr6 171115067 + 46309044 46309236 MER30 238 - 11 238 149058 27 4 1 73 4 0 7 0 24 59 3 21 15 chain 22440 chr6 171115067 + 46353160 46354053 L1PA8 5853 + 4567 5142 40033 6 0 3 142 323 0 178 5 6 108 1 0 74 0 2 56 chain 136538 chr6 171115067 + 46354445 46355984 L1PA5 6144 + 4589 6128 26737 1392 1 6 8 5 0 133 chain 16761 chr6 171115067 + 46356032 46356699 L1PA8 5853 + 5187 5853 40033 64 0 4 309 1 0 44 2 0 74 1 0 5 20 21 32 2 1 19 2 1 92 chain 8763 chr6 171115067 + 46358937 46359035 L1PA5 6144 + 5782 5880 166849 98 chain 102528 chr6 171115067 + 46372782 46374066 LTR12C 1709 - 1 1709 36125 58 0 131 42 44 14 235 0 4 107 3 1 5 1 0 13 0 319 108 1 3 372 1 2 294 chain 11027 chr6 171115067 + 46420555 46420685 L1PA7 6471 + 6341 6470 156107 76 1 0 53 chain 20823 chr6 171115067 + 46500460 46500680 L1PA3long 6157 - 1385 1605 123869 220 chain 124893 chr6 171115067 + 46500680 46502073 L1PA3long 6157 + 4763 6157 29426 33 0 2 423 0 2 6 11 9 69 1 0 850 chain 118908 chr6 171115067 + 46512864 46514687 L1MA2 4263 + 2261 4114 31451 136 2 0 87 2 1 34 11 14 60 0 1 50 5 3 255 0 1 23 12 8 34 4 0 92 4 3 103 6 7 78 0 1 30 0 5 38 1 0 162 6 1 4 0 1 57 16 19 17 4 0 58 1 0 12 8 7 95 47 50 138 1 0 10 33 78 23 8 1 16 1 2 28 1 0 10 chain 6548 chr6 171115067 + 46532752 46532835 MER5A 189 - 2 89 180860 17 0 2 35 0 2 31 chain 26246 chr6 171115067 + 46601795 46602145 THE1B 368 + 0 368 99031 40 0 15 114 1 0 31 4 0 84 0 8 76 chain 66864 chr6 171115067 + 46615656 46616416 L1PA5 6144 + 5391 6144 49703 599 7 0 154 chain 13803 chr6 171115067 + 46653328 46653516 L1PA7 6471 + 6285 6466 145258 150 4 3 17 6 0 11 chain 25855 chr6 171115067 + 46682473 46682770 AluSp 311 - 13 310 100630 297 chain 24947 chr6 171115067 + 46685439 46685752 AluSc5 308 - 1 308 105072 153 11 5 149 chain 8585 chr6 171115067 + 46697445 46697587 MER20 218 - 57 196 167818 71 1 6 16 10 7 28 4 0 7 1 0 4 chain 5055 chr6 171115067 + 46715915 46716013 L1MB7 1623 - 1145 1249 194576 25 13 16 15 1 5 32 1 0 11 chain 81812 chr6 171115067 + 46729529 46730441 L1PA4 6152 - 8 921 42837 135 0 1 777 chain 129896 chr6 171115067 + 46742155 46743701 LTR12C 1709 + 0 1709 28108 133 0 1 303 0 1 172 0 1 108 0 118 119 0 41 115 1 0 5 3 1 106 0 4 379 3 1 19 0 2 80 chain 37336 chr6 171115067 + 46746627 46747618 L1PB1 5432 + 4603 5279 73042 24 3 0 73 4 6 17 0 1 81 2 1 135 12 24 19 0 3 72 364 48 7 3 0 24 1 0 4 25 20 6 2 0 52 3 2 9 6 5 43 chain 4385 chr6 171115067 + 46780914 46780964 L1PB1 5432 - 3815 3865 202138 50 chain 6039 chr6 171115067 + 46784528 46784601 L1PBa1 4058 + 708 781 184901 73 chain 75483 chr6 171115067 + 46809620 46810669 MER11A 1151 + 0 1151 45774 77 0 8 143 1 0 66 0 11 41 1 0 186 9 21 129 6 9 12 1 2 40 0 4 65 0 1 15 5 63 93 15 16 55 0 2 26 8 7 19 0 4 36 chain 26221 chr6 171115067 + 46880414 46880819 MER83 447 + 0 403 99120 149 7 6 18 2 0 103 48 8 8 0 41 70 chain 9558 chr6 171115067 + 46885378 46885515 L1PA6 6164 - 123 258 162789 22 13 11 102 chain 9779 chr6 171115067 + 46885518 46885636 L1PA6 6164 + 6038 6156 161701 118 chain 69302 chr6 171115067 + 46896474 46897239 L1PA4 6152 + 5386 6151 48680 765 chain 3339 chr6 171115067 + 46923325 46923367 MER45A 178 - 68 110 218253 42 chain 3392 chr6 171115067 + 46925857 46925912 LTR37A 408 + 306 361 217259 4 1 0 28 2 0 8 0 3 12 chain 187045 chr6 171115067 + 46958951 46961117 L1PA6 6164 + 3980 6162 20330 383 0 1 313 1 2 538 0 7 177 0 6 554 0 2 13 0 1 76 1 4 5 3 0 92 2 0 8 chain 12730 chr6 171115067 + 46962159 46962345 MER30 238 - 0 197 149331 40 3 0 73 21 35 49 chain 14657 chr6 171115067 + 46974287 46974558 L1PB1 5432 - 12 259 142403 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 14 1 16 1 0 44 22 20 43 chain 3295 chr6 171115067 + 47000192 47000230 MER53 195 - 132 170 219079 38 chain 44239 chr6 171115067 + 47018222 47018698 L1PA2 6032 - 969 1445 63373 476 chain 92210 chr6 171115067 + 47018698 47019693 L1PA2 6032 + 5037 6032 38898 995 chain 89607 chr6 171115067 + 47021908 47022950 L1PA7 6471 - 6 1051 39777 841 0 3 201 chain 26811 chr6 171115067 + 47055249 47055604 L1PA8 5853 + 5505 5853 96938 59 1 0 45 2 0 70 1 0 9 6 5 43 7 6 18 1 0 93 chain 166505 chr6 171115067 + 47055681 47057733 L1PA7 6471 + 4395 6462 22459 245 0 6 621 0 2 351 2 1 88 3 9 347 21 22 211 13 14 150 chain 29858 chr6 171115067 + 47069590 47069904 AluYb8 318 - 4 318 85254 314 chain 81781 chr6 171115067 + 47140468 47141431 L1PA6 6164 + 5195 6159 42855 129 1 4 674 15 16 136 3 0 5 chain 40874 chr6 171115067 + 47143425 47143967 MLT2A2 560 - 0 560 68057 95 4 5 10 1 8 26 6 17 219 1 0 180 chain 164802 chr6 171115067 + 47143967 47146068 HERVL-int 5654 - 0 2105 22677 217 1 0 6 4 0 200 1 7 234 0 2 274 0 1 441 1 0 21 12 13 689 chain 258827 chr6 171115067 + 47156938 47159878 L1PA4 6152 + 3212 6151 15757 2586 4 10 194 1 2 133 6 0 9 2 0 5 chain 326156 chr6 171115067 + 47178439 47183338 L1PA11 4918 + 0 4564 12341 13 14 0 29 2 0 36 4 1 36 1 0 12 9 7 47 1 0 32 2 0 5 2 1 79 3 0 52 3 5 18 2 0 89 0 1 9 0 3 32 6 23 81 315 0 44 0 12 85 32 8 397 0 1 4 9 11 65 1 3 132 0 22 19 0 1 12 0 8 278 4 0 23 6 7 72 3 0 11 1 2 24 3 5 95 0 3 95 1 0 180 0 1 9 6 1 101 0 1 14 0 1 4 0 3 44 7 1 130 15 0 501 0 1 21 0 3 62 0 2 188 0 2 77 5 1 6 0 4 800 2 1 54 11 12 38 0 4 10 6 1 65 45 39 34 7 6 16 2 1 19 4 0 9 8 3 10 15 11 13 1 0 10 chain 179274 chr6 171115067 + 47184410 47186423 L1PA4 6152 - 9 2021 21053 181 1 0 1831 chain 115801 chr6 171115067 + 47186423 47187720 L1PA4 6152 + 2868 4166 32303 909 0 1 388 chain 40477 chr6 171115067 + 47189263 47189833 LTR9B 643 + 9 626 68623 61 0 3 10 0 37 83 3 5 17 0 1 5 21 18 5 0 3 172 9 10 66 0 3 118 chain 3317 chr6 171115067 + 47213318 47213362 MER104 178 + 13 56 218648 15 1 0 28 chain 471548 chr6 171115067 + 47237838 47243399 L1PA6 6164 + 584 6161 7985 672 1 0 390 0 3 969 0 1 570 0 1 83 0 2 629 0 3 379 0 23 58 1 2 112 0 1 15 0 2 180 8 7 167 2 0 169 0 1 522 24 8 280 0 1 168 0 7 7 7 0 138 3 0 7 chain 6645 chr6 171115067 + 47249733 47249839 MER30 238 - 4 113 180132 59 0 2 10 5 11 21 5 0 6 chain 43854 chr6 171115067 + 47280427 47280931 MER9a1 513 - 8 513 64383 224 0 1 280 chain 179179 chr6 171115067 + 47280931 47283227 HERVK9-int 4720 - 0 4684 21058 282 0 96 332 86 1433 157 0 924 10 0 7 453 0 24 18 3 1 137 1 0 686 1 0 30 1 0 6 1 0 66 1 0 4 8 5 13 chain 44431 chr6 171115067 + 47284018 47284511 MER9a1 513 - 19 513 63661 480 0 1 13 chain 16853 chr6 171115067 + 47289003 47289283 AluSc8 310 + 10 287 135969 54 20 15 53 38 40 115 chain 515418 chr6 171115067 + 47295574 47301721 L1PA6 6164 + 0 6162 5626 63 1 2 80 26 26 315 12 13 68 2 1 655 0 1 422 0 3 78 0 1 123 13 0 168 0 6 99 1 2 14 0 1 189 1 0 855 6 7 80 0 5 1203 0 1 541 1 0 105 0 1 184 0 4 28 0 1 351 0 2 305 6 14 6 7 0 139 chain 28142 chr6 171115067 + 47303240 47303669 MER57A1 433 - 0 433 92494 69 17 19 50 5 7 27 4 4 160 0 1 7 13 12 77 chain 73348 chr6 171115067 + 47306888 47308104 L1PB1 5432 + 4236 5422 46860 91 15 3 200 9 10 6 0 1 52 30 27 37 35 46 190 0 2 181 0 3 18 19 15 20 8 6 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 9 28 18 18 3 1 5 1 0 14 7 5 19 2 1 20 1 0 12 5 4 15 chain 29177 chr6 171115067 + 47346626 47346932 AluYa5 310 - 4 310 88162 306 chain 79785 chr6 171115067 + 47352442 47353494 MER11C 1089 + 0 1063 43690 250 0 1 62 0 4 215 61 62 90 12 15 38 0 1 127 0 1 197 chain 47040 chr6 171115067 + 47393334 47393938 L1PA8 5853 - 0 602 61173 92 3 2 16 1 0 55 2 1 5 1 0 74 2 0 44 1 0 195 0 6 59 1 0 53 chain 37531 chr6 171115067 + 47398507 47398987 LTR10F 562 + 0 562 72772 171 1 60 85 0 25 48 3 1 110 1 2 4 1 0 56 chain 106915 chr6 171115067 + 47411093 47412366 SVA_B 1603 - 0 1559 35000 348 0 3 276 1 0 14 13 51 28 4 0 12 0 1 6 17 12 30 8 9 221 0 253 295 chain 26917 chr6 171115067 + 47435306 47435609 AluYk4 311 + 0 300 96567 281 3 0 19 chain 113311 chr6 171115067 + 47438282 47440377 L1MA3 4352 + 2587 4352 33276 127 2 0 6 6 8 58 1 0 15 0 5 6 8 3 229 18 19 36 2 0 39 1 0 52 1 0 30 0 1 161 1 2 13 5 6 51 310 0 210 1 0 33 7 4 51 1 2 193 5 6 73 2 0 18 108 106 85 4 0 23 2 0 24 2 1 5 1 0 29 1 0 11 6 2 22 chain 5861 chr6 171115067 + 47456122 47456365 MER33 330 - 45 291 186579 37 1 8 27 147 143 31 chain 161313 chr6 171115067 + 47472762 47474516 SVA_F 1814 - 0 1804 23148 123 0 2 420 0 37 45 2 0 10 1 0 38 2 1 176 1 15 10 0 1 926 chain 8740 chr6 171115067 + 47499238 47499341 LTR61 567 + 464 567 166976 103 chain 330512 chr6 171115067 + 47514289 47518907 L1PB1 5432 + 827 5420 12186 66 0 1 243 2 6 16 1 2 103 0 3 6 4 1 121 1 0 7 15 0 142 1 5 39 0 2 11 7 12 27 0 10 119 7 5 72 4 8 58 0 2 108 12 13 248 0 1 21 0 2 26 47 11 31 13 19 13 0 2 6 3 1 79 3 1 340 4 0 5 2 0 47 1 4 42 0 2 400 0 1 401 10 0 52 1 0 5 0 1 14 0 3 108 5 7 63 0 1 460 0 2 75 0 4 88 0 1 31 6 7 28 0 1 16 10 12 77 1 4 6 0 4 6 0 3 144 3 10 132 3 0 9 4 3 23 1 0 7 4 3 9 6 2 8 2 0 53 2 1 15 1 0 44 1 0 16 2 0 7 16 5 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 1 0 19 chain 19048 chr6 171115067 + 47519906 47520339 L1PB1 5432 - 11 401 129980 17 1 0 13 5 4 16 2 1 24 2 0 14 9 6 17 19 9 4 1 0 15 1 0 44 1 0 16 2 1 52 2 0 6 10 6 12 3 2 4 1 0 23 11 0 8 21 19 57 chain 234645 chr6 171115067 + 47523797 47526978 L1PA7 6471 - 1 2921 17055 90 0 3 54 3 1 7 2 0 7 7 0 101 1 14 45 269 0 115 2 1 403 6 5 530 0 1 138 1 0 459 11 15 205 1 2 272 1 0 68 0 3 5 6 3 73 15 14 232 3 2 28 0 3 21 chain 30755 chr6 171115067 + 47534253 47534696 L1PA8A 6298 - 7 446 82945 59 1 2 23 20 11 9 1 8 21 7 10 259 6 0 37 chain 52402 chr6 171115067 + 47565797 47566620 L1PB1 5432 + 4626 5414 57351 115 0 1 54 1 0 209 1 0 44 1 2 52 1 2 9 5 0 24 11 9 11 5 1 9 2 0 17 0 1 34 19 17 44 1 0 15 3 0 6 1 0 10 9 0 11 2 0 9 1 0 14 2 0 24 1 0 21 1 0 13 2 1 9 chain 10765 chr6 171115067 + 47580417 47580566 L1MA3 4352 + 3899 4056 157126 59 0 9 25 1 3 31 3 0 30 chain 200378 chr6 171115067 + 47586833 47589603 L1PB1 5432 - 12 2780 19182 16 1 0 13 1 0 21 1 0 24 2 0 14 10 7 28 13 1 13 5 4 42 7 6 10 2 1 31 0 1 20 28 21 13 1 0 20 1 0 8 0 3 51 1 0 5 14 15 147 2 1 261 0 2 123 13 18 252 0 1 4 1 0 4 0 9 67 0 5 152 9 8 154 8 12 91 10 8 77 12 17 401 0 1 374 2 1 190 chain 39253 chr6 171115067 + 47602493 47602953 LTR2 463 + 0 463 70384 129 0 3 331 chain 483713 chr6 171115067 + 47603384 47608991 L1PA5 6144 - 0 6144 7598 141 0 6 21 0 1 169 0 1 235 0 2 221 0 3 848 0 2 149 0 4 418 0 1 256 0 2 919 0 1 43 5 6 1525 9 0 137 12 9 408 0 525 91 chain 410159 chr6 171115067 + 47610389 47615422 Harlequin-int 5206 + 126 5206 9798 6 0 3 14 12 0 123 19 17 11 1 0 183 1 0 199 1 0 374 0 6 145 0 3 127 0 4 335 0 1 881 1 12 110 0 3 456 0 1 501 1 3 109 12 10 115 2 0 5 8 10 218 0 30 11 0 1 138 0 1 513 0 1 5 1 0 395 chain 35650 chr6 171115067 + 47615437 47615879 LTR2 463 + 17 463 75335 112 8 11 71 0 1 251 chain 8837 chr6 171115067 + 47674228 47674406 MER20 218 + 0 197 166449 14 57 76 107 chain 2917 chr6 171115067 + 47677252 47677285 MER53 195 - 32 65 226732 33 chain 42387 chr6 171115067 + 47712860 47713368 L1PA5 6144 - 0 507 66167 11 2 1 495 chain 9088 chr6 171115067 + 47718827 47718990 MER4E 760 - 609 760 165130 30 21 23 4 1 0 75 13 0 19 chain 23243 chr6 171115067 + 47723757 47724101 THE1B 368 + 0 368 114474 40 0 15 117 1 0 26 35 45 125 chain 29185 chr6 171115067 + 47726610 47726920 AluYa5 310 - 0 310 88122 310 chain 46918 chr6 171115067 + 47731077 47731660 L1PA7 6471 - 3 598 61291 9 2 0 181 0 1 79 0 1 66 0 1 50 0 11 196 chain 6148 chr6 171115067 + 47787784 47787857 MER58A 224 + 44 117 184003 73 chain 25349 chr6 171115067 + 47788573 47788934 Tigger2 2703 - 55 431 102966 15 1 0 4 1 2 128 1 9 68 5 6 36 1 7 101 chain 8582 chr6 171115067 + 47805909 47806033 MER65A 464 - 0 129 167833 17 9 13 15 0 1 83 chain 4600 chr6 171115067 + 47818120 47818228 L1PB1 5432 + 5327 5427 199629 5 1 0 14 2 0 16 9 8 21 6 5 8 1 0 18 2 0 5 chain 81695 chr6 171115067 + 47856395 47857289 L1PA3long 6157 - 0 898 42893 849 0 4 45 chain 39056 chr6 171115067 + 47857289 47857719 L1PA3long 6157 + 4845 5275 70403 430 chain 28274 chr6 171115067 + 47868608 47868908 AluYb8 318 + 0 300 92024 300 chain 16681 chr6 171115067 + 47930125 47930477 THE1C 375 + 0 339 136461 13 3 1 56 14 16 18 3 0 5 6 7 45 13 5 19 31 32 11 4 6 9 6 0 96 chain 13865 chr6 171115067 + 47954967 47955144 L1PA4 6152 + 5971 6143 145016 23 0 1 10 7 0 119 0 1 18 chain 161341 chr6 171115067 + 47968658 47970490 L1PA4 6152 + 4306 6136 23146 193 1 0 238 2 0 693 1 0 261 0 2 443 chain 219470 chr6 171115067 + 47978354 47980993 L1PA7 6471 - 19 2680 17920 63 0 1 154 0 9 58 0 10 473 1 0 54 0 7 557 0 1 79 1 2 264 2 1 85 1 0 352 5 6 265 2 1 180 4 0 39 chain 4758 chr6 171115067 + 48024659 48024801 MER53 195 + 37 193 197826 26 57 81 36 10 0 13 chain 544395 chr6 171115067 + 48070211 48076349 L1PA4 6152 + 0 6152 2157 213 0 8 818 1 4 201 1 0 1652 0 3 610 1 0 778 0 2 83 1 0 27 0 1 552 0 1 945 1 0 254 chain 24003 chr6 171115067 + 48089549 48090047 L1PA15 4387 - 40 521 110318 18 2 0 3 2 0 10 2 0 46 27 25 30 1 0 14 2 0 3 2 0 13 1 0 55 1 0 26 1 0 67 0 1 11 62 60 33 1 0 16 0 3 20 7 5 22 chain 82747 chr6 171115067 + 48120037 48121062 MER11A 1151 + 0 1151 42439 55 0 99 22 8 0 23 1 0 94 4 0 95 0 1 39 0 1 250 0 1 128 0 1 10 6 40 31 0 1 80 0 1 179 chain 91609 chr6 171115067 + 48169482 48170549 MER11C 1089 + 0 1073 39092 61 2 1 158 0 5 725 0 2 121 chain 68549 chr6 171115067 + 48184273 48185153 L1PB1 5432 - 329 1215 49013 106 3 2 366 0 2 308 0 5 97 chain 58518 chr6 171115067 + 48185156 48185960 L1PBa 3878 + 1292 2058 53687 308 3 0 7 3 0 5 57 23 48 1 3 372 chain 3611 chr6 171115067 + 48191519 48191623 L1MA7 2200 - 763 862 213467 25 37 39 18 7 0 17 chain 39086 chr6 171115067 + 48191840 48192312 MER4A1 472 + 0 472 70623 472 chain 26188 chr6 171115067 + 48210068 48210397 THE1C 375 + 0 328 99250 70 2 1 257 chain 17639 chr6 171115067 + 48229149 48229363 AluY 311 + 72 287 133878 59 1 2 154 chain 433296 chr6 171115067 + 48232487 48238600 L1PA8 5853 - 5 5803 9229 63 3 0 23 1 0 21 2 1 38 28 9 12 4 3 66 9 8 32 9 8 48 0 1 291 0 1 18 1 2 108 0 1 10 0 1 75 0 2 51 0 2 20 1 0 55 3 0 148 2 0 154 0 1 167 3 5 185 2 3 344 0 1 475 8 6 24 1 2 276 314 80 140 0 2 70 4 0 93 0 1 170 0 14 485 31 18 12 0 1 380 0 1 287 0 3 166 0 10 11 9 0 50 8 0 65 4 7 30 0 3 138 0 1 4 20 18 43 1 4 121 41 9 342 19 7 193 32 12 14 1 0 7 5 3 22 chain 2897 chr6 171115067 + 48244000 48244033 MLT1E2 623 + 533 566 227098 33 chain 35247 chr6 171115067 + 48261384 48261780 L1PA4 6152 - 18 414 75862 396 chain 25302 chr6 171115067 + 48261780 48262083 L1P1 4361 + 3128 3438 103217 80 0 1 43 0 5 36 0 1 144 chain 5715 chr6 171115067 + 48274749 48274826 L1MB2 1706 - 32 108 187971 63 1 0 13 chain 19785 chr6 171115067 + 48284255 48284478 L1PA4 6152 - 131 354 127860 223 chain 2993 chr6 171115067 + 48294994 48295029 Tigger4a 237 + 200 235 225198 35 chain 3011 chr6 171115067 + 48295671 48295722 MADE1 96 - 28 96 224797 15 5 22 31 chain 23591 chr6 171115067 + 48296144 48296422 AluY 311 + 5 276 112623 127 0 1 130 8 0 13 chain 48072 chr6 171115067 + 48302750 48303276 L1PA4 6152 + 5610 6136 60426 526 chain 33422 chr6 171115067 + 48312439 48312820 L1PA4 6152 + 5774 6152 78529 230 3 0 148 chain 11963 chr6 171115067 + 48319132 48319288 L1PA8 5853 + 5699 5853 152352 40 4 3 18 1 0 93 chain 544226 chr6 171115067 + 48330828 48336853 L1PA3long 6157 + 0 6157 2185 152 14 15 88 0 1 525 0 128 5098 0 1 11 0 1 137 chain 125842 chr6 171115067 + 48338401 48339833 SVA_D 2077 - 0 2062 29145 568 0 37 39 0 176 72 5 269 20 0 40 70 0 37 179 0 76 479 chain 10535 chr6 171115067 + 48348605 48348723 L1PA4 6152 + 6034 6151 158114 100 1 0 17 chain 10479 chr6 171115067 + 48353649 48353783 L1PBa 3878 - 674 808 158342 134 chain 4047 chr6 171115067 + 48390322 48390460 MER52C 1267 - 260 380 206684 12 16 25 13 14 0 16 1 0 4 30 18 32 chain 104575 chr6 171115067 + 48417285 48418665 L1PB1 5432 - 2742 4138 35547 190 0 1 43 16 18 5 1 0 32 2 9 272 1 5 4 1 0 701 0 4 112 chain 183000 chr6 171115067 + 48418665 48421921 L1PB1 5432 + 2735 5423 20683 67 17 21 19 2 0 149 16 18 227 0 1 6 2 0 269 3 1 116 0 15 66 1 0 12 9 10 163 6 5 49 1 2 4 0 1 216 1 2 182 2 3 267 3 0 144 517 0 34 12 11 245 89 54 24 1 0 4 5 4 10 7 3 9 2 0 44 10 9 10 9 8 57 24 12 19 1 0 4 6 4 13 2 0 22 1 0 22 1 0 12 1 0 8 1 0 11 chain 42307 chr6 171115067 + 48420690 48421201 MER9a2 513 - 0 513 66259 136 0 2 34 0 1 327 1 0 13 chain 6328 chr6 171115067 + 48437820 48437928 L1MB1 2102 - 96 202 182561 55 10 0 7 5 13 31 chain 105853 chr6 171115067 + 48460179 48461340 L1PA3long 6157 - 3122 4298 35296 380 0 15 781 chain 14223 chr6 171115067 + 48461340 48461496 L1PA3long 6157 + 3037 3193 142636 156 chain 268157 chr6 171115067 + 48461500 48464459 L1PA3long 6157 + 3198 6157 15282 2959 chain 60051 chr6 171115067 + 48469773 48470508 L1PA7 6471 - 1321 2060 52795 39 0 2 133 0 5 16 2 0 39 1 2 281 2 0 222 chain 103383 chr6 171115067 + 48470508 48471776 L1PA7 6471 + 5162 6470 35901 223 4 5 83 0 1 142 1 29 40 0 7 283 0 1 162 0 1 245 0 3 78 2 0 5 chain 98074 chr6 171115067 + 48475465 48476547 L1PA3long 6157 - 0 1081 37259 259 1 0 822 chain 27393 chr6 171115067 + 48480652 48480961 L1PA5 6144 + 5831 6140 94994 309 chain 122678 chr6 171115067 + 48484504 48485887 L1PA5 6144 - 0 1387 30171 849 0 4 534 chain 17274 chr6 171115067 + 48498674 48498865 L1PA2 6032 + 5833 6024 134851 191 chain 75047 chr6 171115067 + 48505888 48506761 L1PA5 6144 + 5267 6141 45997 26 0 5 708 7 6 119 3 0 10 chain 3975 chr6 171115067 + 48509375 48509465 MER91B 187 + 13 113 207772 18 29 39 43 chain 24417 chr6 171115067 + 48540906 48541184 AluY 311 + 10 288 107984 278 chain 3416 chr6 171115067 + 48543755 48543794 MER21A 919 + 535 574 216837 39 chain 8325 chr6 171115067 + 48551531 48551625 L1PA7 6471 + 6364 6458 169247 94 chain 160117 chr6 171115067 + 48558779 48561055 L1PA7 6471 - 12 1991 23324 7 0 1 128 8 0 7 5 13 260 0 2 58 0 1 364 1 0 121 0 2 39 4 5 496 303 0 376 0 1 4 1 0 94 chain 22884 chr6 171115067 + 48575146 48575394 L1PA2 6032 - 5 253 116171 248 chain 6331 chr6 171115067 + 48596240 48596371 LTR23 429 + 9 142 182529 65 44 46 22 chain 34050 chr6 171115067 + 48610841 48611268 LOR1a 498 + 14 452 77545 33 0 1 166 0 10 228 chain 296459 chr6 171115067 + 48649944 48653748 L1PA7 6471 + 2568 6394 13620 64 14 0 48 0 1 227 0 1 12 7 6 524 2 1 48 1 0 30 1 0 7 7 11 449 4 0 168 0 1 190 0 1 975 1 8 7 0 1 5 8 0 256 5 4 19 1 2 376 12 13 34 0 1 119 0 1 69 0 33 114 chain 11215 chr6 171115067 + 48670185 48670320 L1PA5 6144 + 6011 6142 155368 124 4 0 7 chain 46829 chr6 171115067 + 48679508 48680042 L1PA4 6152 + 5607 6143 61352 210 0 1 183 0 1 141 chain 39635 chr6 171115067 + 48690074 48690499 L1PA3long 6157 + 5466 5891 69847 425 chain 23652 chr6 171115067 + 48690506 48690764 L1PA3long 6157 + 5899 6157 112299 258 chain 544689 chr6 171115067 + 48704985 48711011 L1PA3long 6157 + 2 6157 2109 68 0 1 81 0 1 623 0 128 3018 2 1 2234 chain 85194 chr6 171115067 + 48726895 48727879 L1PA5 6144 - 7 992 41454 245 2 1 418 2 1 177 0 3 140 chain 83267 chr6 171115067 + 48764963 48765969 LTR13 1007 - 0 1006 42223 28 24 23 257 4 5 56 0 1 333 1 0 303 chain 18984 chr6 171115067 + 48792218 48792456 AluSp 311 + 58 297 130144 76 3 4 159 chain 29404 chr6 171115067 + 48804919 48805383 LTR7B 505 + 0 505 87045 108 0 10 57 0 38 12 3 27 28 29 0 42 0 1 36 1 0 82 21 20 11 0 1 7 2 0 25 chain 17380 chr6 171115067 + 48807448 48807671 L1PREC2 3366 - 1452 1676 134562 172 0 1 33 1 0 4 0 1 13 chain 63976 chr6 171115067 + 48811056 48811811 L1PA5 6144 - 3 777 51018 143 2 4 296 0 17 314 chain 99512 chr6 171115067 + 48814933 48816223 L1PB1 5432 - 1698 3022 36902 24 1 0 4 0 1 125 7 42 301 2 0 86 0 8 219 0 1 14 0 1 66 2 0 317 3 1 23 11 6 85 chain 15141 chr6 171115067 + 48817640 48817974 L1PB1 5432 + 5115 5417 140941 23 26 20 11 3 1 50 2 1 16 1 0 43 1 0 16 25 13 18 3 0 19 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 5718 chr6 171115067 + 48821152 48821226 LTR49-int 1717 + 920 994 187953 74 chain 49211 chr6 171115067 + 48841312 48841894 LTR14C 587 + 0 587 59584 129 0 1 360 0 4 93 chain 48350 chr6 171115067 + 48846777 48847362 LTR14C 587 + 0 587 60210 11 1 3 573 chain 130863 chr6 171115067 + 48868620 48870018 L1HS 6032 - 0 1398 27894 1398 chain 181950 chr6 171115067 + 48873555 48875812 L1PA7 6471 - 1 2210 20792 12 2 0 498 51 0 339 1 0 185 0 1 319 2 0 57 3 0 166 0 15 47 0 1 78 18 12 250 1 0 189 0 1 39 chain 7052 chr6 171115067 + 48897574 48897662 L1MA6 2487 - 333 421 177085 88 chain 94202 chr6 171115067 + 48911628 48912741 L1PA4 6152 + 5071 6151 38297 360 7 0 92 5 3 38 35 11 576 chain 80268 chr6 171115067 + 48950219 48951334 LTR12C 1709 - 0 1451 43484 82 1 0 18 0 1 231 0 2 147 11 4 15 24 0 76 0 47 78 0 278 115 5 6 135 23 19 64 10 53 80 chain 82431 chr6 171115067 + 48951657 48952774 LTR12C 1709 + 258 1709 42572 76 14 57 73 2 0 5 2 0 43 6 7 90 1 2 39 0 278 143 0 47 99 42 11 392 6 5 84 chain 154718 chr6 171115067 + 48976174 48978146 L1PA7 6471 - 5 2003 24015 8 0 4 97 18 0 317 4 47 346 2 3 23 2 0 111 1 4 21 3 0 98 3 0 174 0 1 13 0 6 202 3 5 8 9 0 203 0 1 306 chain 3864 chr6 171115067 + 48994919 48994990 MLT2B5 662 - 40 108 209392 6 5 0 9 0 5 5 3 0 43 chain 492520 chr6 171115067 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chr6 171115067 + 49126227 49126499 AluY 311 + 38 311 119581 94 5 6 173 chain 70053 chr6 171115067 + 49131065 49132192 L1PB1 5432 + 4314 5404 48370 227 1 2 78 1 0 5 2 0 167 7 5 35 6 5 262 0 3 13 12 1 21 1 0 4 41 35 21 6 7 15 2 1 16 0 3 40 1 0 16 2 0 6 1 0 11 9 0 9 30 25 23 1 0 22 1 0 12 chain 21392 chr6 171115067 + 49145063 49145332 AluSg 306 + 32 302 122533 132 1 2 136 chain 5454 chr6 171115067 + 49146890 49146959 MLT1A1 405 + 292 360 190486 40 1 0 28 chain 10797 chr6 171115067 + 49193976 49194107 L1MA2 4263 - 818 949 157000 131 chain 28469 chr6 171115067 + 49194138 49194449 AluYb8 318 - 8 318 91309 184 1 0 126 chain 42362 chr6 171115067 + 49203624 49205209 L1PB1 5432 - 2 729 66201 4 1 0 4 1 0 17 2 1 12 1 0 22 1 0 24 2 0 14 736 6 17 16 7 6 3 0 8 8 7 39 7 6 15 2 1 52 18 12 10 1 0 12 6 5 15 112 11 383 0 3 14 chain 23816 chr6 171115067 + 49203742 49204290 L1PB1 5432 - 110 598 111389 14 44 31 38 9 8 10 2 1 10 34 0 41 3 1 9 2 0 3 2 0 12 1 0 10 1 0 12 12 11 28 4 0 6 12 16 56 21 17 145 0 2 7 chain 3998 chr6 171115067 + 49204393 49204440 L1PB1 5432 - 40 86 207408 22 1 0 24 chain 91108 chr6 171115067 + 49209773 49210844 MER11C 1089 - 16 1089 39259 455 1 2 552 0 1 63 chain 19272 chr6 171115067 + 49219306 49219530 L1PA7 6471 - 345 569 129311 224 chain 27536 chr6 171115067 + 49219530 49219879 L1PA7 6471 + 6126 6469 94548 5 1 0 97 6 0 50 0 2 50 1 2 127 2 0 10 chain 527916 chr6 171115067 + 49242204 49249559 L1PA5 6144 + 3 6144 4411 127 1 33 564 1255 0 1758 0 1 610 0 1 60 0 1 4 1 2 6 2 0 32 1 0 482 0 2 971 0 1 412 0 1 222 1 5 703 0 1 130 2 1 11 chain 8458 chr6 171115067 + 49243556 49243656 LTR12C 1709 + 932 1032 168525 100 chain 25347 chr6 171115067 + 49258373 49258656 L1PA4 6152 + 5858 6141 102971 283 chain 57987 chr6 171115067 + 49284366 49285094 LTR12 884 - 0 884 53984 484 0 22 36 1 134 114 2 4 65 1 0 25 chain 25885 chr6 171115067 + 49291436 49291845 L1PB2 3958 + 3404 3803 100502 35 2 0 5 13 7 90 1 0 77 1 0 54 22 21 42 0 2 35 1 0 31 chain 21713 chr6 171115067 + 49293279 49293644 THE1D 372 - 0 372 121339 56 13 7 85 68 81 143 chain 15757 chr6 171115067 + 49296446 49296642 MER75B 242 - 4 197 139089 12 2 0 176 1 0 5 chain 3977 chr6 171115067 + 49305011 49305056 U5 65 + 0 45 207716 45 chain 33013 chr6 171115067 + 49308401 49308875 MER4A1 472 + 20 472 79195 48 4 5 33 0 1 54 0 1 54 4 5 25 0 1 58 29 0 26 0 2 139 chain 3011 chr6 171115067 + 49312488 49312520 U7 62 - 29 61 224783 32 chain 4809 chr6 171115067 + 49323538 49323591 MER2 342 + 162 215 197240 53 chain 28935 chr6 171115067 + 49341588 49341950 MLT2A1 477 + 0 383 89301 169 0 4 21 0 1 7 0 16 165 chain 17345 chr6 171115067 + 49350418 49350652 L1PA10 4194 - 48 282 134672 30 3 0 34 1 0 132 0 4 34 chain 540916 chr6 171115067 + 49354599 49360616 L1PA3long 6157 + 4 6157 2679 147 3 4 189 1 2 422 8 136 296 0 1 1759 0 3 229 0 1 1815 0 1 1148 chain 15623 chr6 171115067 + 49364160 49364556 L1PB1 5432 + 5064 5422 139512 15 26 26 12 5 0 21 39 31 51 1 2 15 2 1 40 5 0 4 1 0 14 2 0 15 9 0 15 12 9 11 2 0 24 1 0 22 1 0 12 7 6 12 chain 24594 chr6 171115067 + 49396524 49396916 L1PA8 5853 + 5463 5853 107025 101 1 0 44 2 0 31 0 9 27 6 5 12 29 27 21 2 1 10 2 0 9 1 0 52 1 0 41 chain 28097 chr6 171115067 + 49406329 49406731 MLT2A1 477 + 0 397 92661 29 1 6 87 3 1 45 6 2 11 0 1 21 0 1 86 0 1 6 1 0 88 6 0 12 chain 88097 chr6 171115067 + 49406733 49407836 HERVL-int 5654 - 2076 3170 40336 565 12 1 24 1 0 44 3 0 7 32 27 44 0 8 132 0 1 68 0 2 171 chain 4995 chr6 171115067 + 49427968 49428028 MIR 256 - 91 151 195192 60 chain 364078 chr6 171115067 + 49441127 49445290 L1PA5 6144 + 1873 6144 11257 321 0 2 188 7 8 269 0 1 370 0 7 204 0 4 38 1 0 127 0 1 199 0 76 138 0 8 794 5 6 255 0 1 407 0 4 700 0 1 29 1 0 5 0 3 22 0 1 36 1 0 46 chain 82121 chr6 171115067 + 49449017 49450099 LTR12E 1234 - 0 1234 42717 86 27 53 23 0 1 211 9 20 19 0 119 243 1 4 70 2 1 4 0 1 144 0 1 208 9 0 26 chain 90999 chr6 171115067 + 49450461 49451693 LTR12E 1234 - 11 1234 39294 99 4 30 23 0 1 210 9 20 44 2 0 98 41 0 228 9 12 81 0 2 336 20 11 28 chain 5558 chr6 171115067 + 49465748 49465807 L1PA5 6144 - 14 73 189492 59 chain 70548 chr6 171115067 + 49468990 49469838 MER11D 897 - 0 897 48137 106 1 26 145 4 27 269 4 5 319 chain 37927 chr6 171115067 + 49469838 49470307 HERVK11D-int 613 - 0 460 72240 325 1 0 52 1 2 51 10 1 29 chain 71827 chr6 171115067 + 49475394 49476555 MER11D 897 - 0 897 47552 79 2 0 202 0 23 80 288 0 178 0 1 13 5 6 170 0 1 144 chain 12938 chr6 171115067 + 49480010 49480177 L1PA8 5853 - 0 165 148469 93 1 0 19 2 1 52 chain 3017 chr6 171115067 + 49492950 49492984 MER57D 437 - 0 34 224680 34 chain 33525 chr6 171115067 + 49530787 49531242 Charlie3 2679 + 18 476 78357 17 1 0 25 11 8 4 0 1 93 2 0 117 4 5 111 1 5 39 0 3 30 chain 35708 chr6 171115067 + 49554908 49555379 LTR10F 562 - 0 562 75261 127 0 1 39 5 4 99 1 5 51 6 9 22 0 84 121 chain 533183 chr6 171115067 + 49566276 49572386 L1PA5 6144 + 0 6138 3825 749 0 1 404 0 3 635 0 6 280 0 1 393 1 15 663 0 1 1394 1 2 71 5 4 7 0 1 1009 1 2 497 chain 25873 chr6 171115067 + 49577591 49577944 L1PA8 5853 + 5503 5850 100555 61 1 0 44 2 0 69 1 0 9 1 0 52 4 3 19 5 4 72 0 1 13 chain 3734 chr6 171115067 + 49581549 49581656 L1MC4a 1092 - 108 213 211407 32 50 48 25 chain 5058 chr6 171115067 + 49589769 49589847 THE1B 368 + 0 81 194560 15 8 6 16 0 5 39 chain 27230 chr6 171115067 + 49590543 49590850 AluYk4 311 - 7 311 95500 172 2 0 30 1 0 102 chain 130650 chr6 171115067 + 49596127 49597825 LTR12C 1709 - 0 1709 27933 94 6 0 94 102 0 293 0 4 106 4 2 4 1 0 172 1 0 66 0 1 6 0 118 171 14 13 77 1 2 486 chain 5699 chr6 171115067 + 49596321 49596403 LTR12C 1709 - 57 169 186118 45 0 1 4 1 30 32 chain 26260 chr6 171115067 + 49609600 49609901 AluYk4 311 + 0 303 98977 191 0 2 110 chain 21550 chr6 171115067 + 49631388 49631647 L1PA7 6471 - 5 261 121965 8 3 0 248 chain 30031 chr6 171115067 + 49631659 49632022 L1PA7 6471 + 5837 6201 84719 125 0 1 238 chain 245756 chr6 171115067 + 49638226 49641193 L1PA6 6164 + 3181 6162 16468 59 6 10 15 0 3 422 6 7 42 2 1 5 0 1 720 0 3 842 0 4 843 1 0 4 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49840749 L1PA3long 6157 - 127 1635 27333 1508 chain 10159 chr6 171115067 + 49840754 49840882 L1PA3long 6157 + 6018 6146 159811 80 1 0 41 0 1 6 chain 127080 chr6 171115067 + 49842262 49844181 L1PA11 4918 + 2666 4578 28796 30 28 25 216 1 0 23 7 5 7 1 0 255 1 3 44 39 33 118 1 17 220 23 23 233 9 11 216 5 6 77 4 8 152 9 8 4 0 1 6 2 0 67 2 0 14 1 0 6 0 1 13 44 31 15 1 0 13 1 0 11 chain 242382 chr6 171115067 + 49854753 49857932 HERVK22-int 3844 - 0 3843 16652 94 1 0 32 1 6 46 7 660 34 33 33 235 0 1 311 1 0 177 0 1 257 0 4 501 68 58 6 0 2 8 0 8 491 0 1 40 0 1 17 0 1 461 2 1 356 chain 382966 chr6 171115067 + 49860429 49866459 L1PB1 5432 + 80 5424 10665 326 4 2 203 17 21 120 0 7 85 0 3 30 0 1 44 2 38 145 0 1 136 0 4 81 0 8 60 1 0 7 2 0 4 5 0 4 7 0 677 0 1 14 0 1 396 4 0 79 5 7 92 1 4 133 28 13 15 1 0 179 19 32 107 0 3 96 0 1 342 4 1 38 10 0 84 4 0 402 10 6 34 0 4 55 0 5 320 1 0 62 11 8 477 0 5 11 693 0 24 1 0 9 16 11 11 2 0 51 2 1 12 6 4 43 1 0 16 1 0 4 19 8 19 24 19 24 1 0 21 2 1 12 1 0 16 1 0 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1490 1528 215521 38 chain 11154 chr6 171115067 + 50106531 50106660 L1PA4 6152 + 6014 6143 155614 129 chain 171382 chr6 171115067 + 50128956 50131385 L1PA7 6471 - 6 2126 21896 333 0 1 50 0 1 271 322 0 109 0 2 62 6 8 14 9 12 132 0 1 520 2 0 422 0 4 37 0 1 140 chain 541134 chr6 171115067 + 50191017 50197178 L1PA4 6152 - 1 6145 2644 3211 1 2 1700 8 7 182 0 1 207 17 0 265 1 0 569 chain 21439 chr6 171115067 + 50203328 50203613 AluSp 311 + 13 295 122373 35 13 11 172 1 0 64 chain 32870 chr6 171115067 + 50224268 50226377 L1PA13 3608 - 140 3389 79421 18 10 6 50 11 8 51 1 0 62 2 0 113 1 0 28 1 0 38 0 1 30 1468 2620 15 1 0 15 1 0 8 6 9 85 35 33 59 chain 86551 chr6 171115067 + 50242697 50243729 L1PA5 6144 - 45 1086 40949 217 5 6 64 0 2 124 0 2 292 5 9 325 chain 31746 chr6 171115067 + 50243729 50244095 L1PA5 6144 + 4652 5018 80269 366 chain 15322 chr6 171115067 + 50270988 50271227 L1PA15 4387 - 1475 1716 140420 26 3 2 71 21 23 7 1 0 92 0 2 18 chain 533484 chr6 171115067 + 50311440 50317582 L1PA4 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1 279 1 2 382 0 4 487 2 1 107 1 2 247 chain 29663 chr6 171115067 + 50452485 50452795 AluYa5 310 - 0 310 85995 310 chain 181651 chr6 171115067 + 50454681 50457061 L1PA7 6471 + 4224 6467 20829 33 4 3 408 0 4 278 1 0 347 0 1 59 0 1 114 142 2 140 0 3 168 4 1 499 2 3 171 2 0 8 chain 5887 chr6 171115067 + 50456003 50456067 L1PA7 6471 + 5405 5469 183129 64 chain 12575 chr6 171115067 + 50497582 50497858 L1PB1 5432 + 5168 5422 149938 52 2 1 16 8 7 36 1 0 12 28 16 18 3 1 5 1 0 14 4 2 22 1 0 10 1 2 9 1 0 13 1 0 18 chain 17457 chr6 171115067 + 50504708 50504926 L1PA5 6144 - 0 212 134363 151 6 0 61 chain 109291 chr6 171115067 + 50538640 50540156 L1PA8 5853 - 20 2074 34372 12 3 10 51 2 1 18 2 1 52 1 0 9 2 1 70 2 0 44 1 0 210 89 646 417 30 0 318 0 10 54 0 1 129 chain 1869 chr6 171115067 + 50587262 50587573 L1PB1 5432 + 4511 4803 65541 118 12 1 164 8 0 9 chain 532894 chr6 171115067 + 50587577 50593716 L1PA4 6152 + 6 6151 3865 366 10 12 196 1 0 155 0 1 500 2 0 1090 1 2 503 1 5 412 0 1 2902 chain 3833 chr6 171115067 + 50593764 50594402 L1PB1 5432 + 4828 5430 65541 264 1 13 11 11 0 22 7 1 5 1 0 12 19 13 51 2 1 16 9 8 36 1 0 15 3 0 17 61 47 10 1 0 22 1 0 12 1 0 22 1 0 4 chain 290281 chr6 171115067 + 50597730 50601102 L1PA5 6144 - 6 3960 14002 960 16 0 1223 1 0 242 2 597 284 0 4 644 chain 30760 chr6 171115067 + 50611346 50611720 L1PA6 6164 - 8 382 82939 374 chain 385832 chr6 171115067 + 50611735 50616487 L1HS 6032 - 0 4731 10579 418 0 1 639 19 15 165 3 4 444 0 1 558 3 4 223 2 0 386 4 3 967 24 6 897 chain 37855 chr6 171115067 + 50706800 50707227 L1PA5 6144 - 14 440 72336 422 1 0 4 chain 5955 chr6 171115067 + 50719873 50719938 L1PA3long 6157 + 6092 6157 185642 65 chain 7726 chr6 171115067 + 50726582 50726680 MER31A 484 - 387 484 172744 19 1 0 78 chain 29821 chr6 171115067 + 50734363 50734680 AluYb8 318 - 1 318 85370 317 chain 63285 chr6 171115067 + 50739390 50740107 L1PA5 6144 + 5415 6137 51328 58 0 4 485 0 1 174 chain 28780 chr6 171115067 + 50749921 50750245 L1PA4 6152 - 9 333 89979 324 chain 31808 chr6 171115067 + 50750246 50750608 L1PA4 6152 + 5449 5811 81156 362 chain 28824 chr6 171115067 + 50769956 50770273 AluYb8 318 - 10 318 89790 176 9 0 132 chain 115848 chr6 171115067 + 50777162 50778481 SVA_C 1631 - 6 1580 32514 11 4 0 184 5 8 328 0 256 787 chain 19268 chr6 171115067 + 50854139 50854373 AluY 311 + 60 295 129326 72 0 1 162 chain 22670 chr6 171115067 + 50855660 50855915 L1PA2 6032 - 1 255 117214 19 1 0 235 chain 55702 chr6 171115067 + 50861488 50862084 L1PA2 6032 - 8 604 55304 596 chain 56027 chr6 171115067 + 50862084 50862687 L1PA2 6032 + 4823 5426 55102 603 chain 517041 chr6 171115067 + 50883571 50889696 L1PA3long 6157 - 13 6156 5478 54 0 2 214 0 1 323 1 5 231 0 4 326 0 1 1294 8 7 698 0 2 168 0 1 738 0 1 4 1 0 448 0 1 181 1 0 24 5 1 6 0 4 686 9 16 128 0 1 140 1 2 423 5 0 8 chain 6930 chr6 171115067 + 50889844 50889930 L1MA9 1812 - 987 1073 177957 86 chain 90178 chr6 171115067 + 50899646 50900627 L1PA3long 6157 - 1 982 39586 981 chain 3894 chr6 171115067 + 50913925 50913970 MADE1 96 + 1 46 208948 45 chain 2834 chr6 171115067 + 50922826 50922857 MER3 215 - 137 168 228156 31 chain 5573 chr6 171115067 + 50940646 50940726 L1PB1 5432 - 10 87 189342 23 1 0 7 1 0 22 1 0 25 chain 13839 chr6 171115067 + 50964655 50964864 L1PA8 5853 - 3 225 145099 89 2 1 19 2 1 47 20 35 30 chain 88769 chr6 171115067 + 50976282 50977359 L1PA7 6471 - 7 1075 40061 5 3 0 59 7 1 77 7 9 152 3 0 537 0 1 227 chain 92074 chr6 171115067 + 50977359 50978497 L1PA7 6471 + 4268 5388 38948 120 31 8 220 0 1 51 0 4 105 0 3 168 4 1 295 1 0 109 0 1 34 chain 9482 chr6 171115067 + 50995331 50995470 MSTB 430 + 13 151 163151 103 0 14 8 15 0 13 chain 79522 chr6 171115067 + 50999118 51000000 L1PA4 6152 - 9 891 43814 882 chain 372424 chr6 171115067 + 51000911 51005216 L1P1 4361 - 20 4360 11014 12 2 1 23 1 0 154 1 0 123 0 5 431 0 1 254 0 2 55 1 0 83 1 0 35 3 0 2943 0 35 183 chain 20149 chr6 171115067 + 51007512 51007753 L1PA6 6164 - 2 245 126680 9 0 2 232 chain 32513 chr6 171115067 + 51019497 51019941 MLT2A1 477 + 0 477 80001 97 0 2 69 5 2 215 6 0 8 7 47 37 chain 439214 chr6 171115067 + 51019941 51026015 HERVL-int 5654 + 0 5654 9072 341 3 6 223 0 21 242 1 0 207 2 1 219 1 0 363 5 1 53 2 1 46 0 2 85 23 22 247 4 13 319 0 8 336 1 11 17 0 1 544 7 14 436 22 23 630 16 21 13 0 5 28 4 3 59 0 3 63 0 11 20 0 11 72 0 1 14 6 5 135 0 2 233 0 1 70 0 1 11 5 4 202 0 1 13 0 1 55 516 4 32 20 19 19 2 3 87 chain 23884 chr6 171115067 + 51025588 51025855 L1PA3long 6157 - 11 278 111002 267 chain 33747 chr6 171115067 + 51026015 51026513 MLT2A1 477 + 0 467 78024 168 1 5 199 0 1 21 64 28 45 chain 130212 chr6 171115067 + 51050212 51051789 L1P3 4156 - 17 1605 28043 24 2 1 7 2 0 6 0 1 104 0 3 417 0 3 14 9 13 515 0 1 277 0 1 54 0 1 146 chain 5677 chr6 171115067 + 51057789 51057866 L1PA3long 6157 - 2 73 188331 8 6 0 63 chain 192572 chr6 171115067 + 51068910 51071066 L1PA3long 6157 - 1000 3160 19807 992 0 1 4 11 10 138 0 4 1011 chain 85711 chr6 171115067 + 51071066 51072038 L1PA3long 6157 + 5191 6157 41132 232 6 0 734 chain 5927 chr6 171115067 + 51079766 51079879 MER96B 391 - 56 165 185924 36 30 26 47 chain 544905 chr6 171115067 + 51089157 51095290 L1PA3long 6157 + 6 6149 2085 454 10 11 696 1 4 69 0 1 1132 0 1 1638 0 4 134 11 10 4 0 1 1984 chain 46971 chr6 171115067 + 51107334 51107949 L1PB1 5432 - 1056 1672 61230 464 35 36 116 chain 68370 chr6 171115067 + 51107953 51109008 L1PB1 5432 + 4402 5417 49098 43 1 0 110 4 0 73 13 10 24 5 7 36 0 2 98 11 12 191 2 0 5 0 2 86 1 0 13 3 0 24 1 0 9 17 12 8 2 0 53 2 1 15 1 0 45 1 0 15 4 0 6 16 6 19 2 0 5 1 0 14 2 0 27 1 0 17 1 0 14 1 0 13 chain 64742 chr6 171115067 + 51144850 51145663 LTR12C 1709 + 696 1709 50680 103 2 111 202 1 0 7 2 0 105 11 4 212 0 1 10 3 104 72 1 0 82 chain 13563 chr6 171115067 + 51193527 51193723 MER30 238 - 0 207 146122 14 0 1 24 3 0 76 16 29 63 chain 151637 chr6 171115067 + 51197581 51199240 L1PA3long 6157 + 4485 6144 24379 1659 chain 521476 chr6 171115067 + 51208100 51214561 L1PA7 6471 - 21 6468 5011 137 1 0 412 2 0 107 0 1 168 1 4 682 5 4 312 3 9 42 0 1 10 2 0 728 1 0 346 0 1 171 2 1 6 0 3 477 0 1 157 1 2 30 20 2 226 28 2 12 0 1 295 1 2 35 2 3 155 4 17 39 0 1 216 0 2 1038 0 1 498 0 1 89 chain 22640 chr6 171115067 + 51278231 51278590 THE1C 375 + 0 364 117377 51 37 35 99 1 2 5 0 5 35 5 7 110 1 0 15 chain 33291 chr6 171115067 + 51283519 51284123 L1PB1 5432 - 10 586 78741 6 1 0 12 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 14 30 18 13 1 0 45 7 6 9 2 1 52 2 0 8 8 4 12 3 2 4 1 0 25 5 0 6 20 29 232 chain 236444 chr6 171115067 + 51286425 51290073 L1PB1 5432 + 1921 5423 16955 99 0 1 429 9 10 39 0 1 135 0 41 154 6 0 11 2 1 45 1 4 266 220 9 189 8 49 73 4 0 259 1 2 61 39 43 140 0 1 389 1 0 73 1 2 57 12 13 110 2 0 71 3 4 223 19 30 59 0 2 87 1 2 8 2 1 24 1 0 8 1 0 10 7 3 9 2 0 51 20 18 45 1 0 14 1 0 4 2 0 5 43 32 9 2 0 20 5 4 22 1 0 12 1 0 12 1 0 7 chain 15307 chr6 171115067 + 51287633 51287825 L1PB1 5432 + 1965 2158 140473 120 0 1 72 chain 29026 chr6 171115067 + 51318845 51319148 AluYa5 310 - 7 310 88872 303 chain 509806 chr6 171115067 + 51345167 51351341 L1PA6 6164 - 2 6164 6184 846 2 1 401 0 1 234 1 0 481 1 0 4 0 1 663 0 1 339 0 1 19 5 1 88 1 0 694 0 7 51 1 2 235 0 1 490 1 0 857 32 8 9 0 24 193 11 10 97 35 33 120 21 13 48 9 4 185 chain 7663 chr6 171115067 + 51451547 51451667 MSTA-int 1630 - 5 126 173147 27 18 19 75 chain 26064 chr6 171115067 + 51462644 51463004 THE1B 368 - 0 368 99778 49 5 13 114 3 1 23 1 0 123 0 5 25 2 0 15 chain 6027 chr6 171115067 + 51463418 51463660 LTR12D 1347 + 501 763 185010 34 1 32 14 121 28 43 10 92 19 chain 68746 chr6 171115067 + 51464249 51465379 L1PB1 5432 + 4294 5423 48925 17 1 2 319 4 0 85 0 28 58 0 1 40 0 1 8 0 1 129 0 2 98 21 24 7 5 0 24 1 0 6 1 0 13 27 21 42 2 4 50 11 10 12 2 0 6 64 48 23 7 6 12 1 0 13 1 0 14 1 0 5 chain 4826 chr6 171115067 + 51494518 51494621 Charlie1a 1436 + 443 538 197069 14 2 3 33 23 14 31 chain 56688 chr6 171115067 + 51506165 51506844 L1PA7 6471 + 5772 6461 54728 40 1 13 203 0 1 209 7 4 219 chain 29794 chr6 171115067 + 51517365 51517675 AluYa5 310 - 0 310 85461 310 chain 52491 chr6 171115067 + 51520571 51521249 L1PA8 5853 + 5129 5797 57308 230 4 0 118 0 1 86 1 0 45 2 0 73 1 0 5 4 3 50 2 1 18 3 2 36 chain 490166 chr6 171115067 + 51531355 51536769 L1PA3long 6157 - 7 5554 7357 48 0 4 1660 0 1 3530 1 129 175 chain 114579 chr6 171115067 + 51553161 51554789 L1PA13 3608 + 1754 3365 32928 135 8 4 10 4 2 28 5 2 8 1 0 19 1 5 127 15 0 106 6 7 137 0 3 67 2 1 94 0 1 219 8 10 393 2 1 26 7 6 10 16 18 5 1 0 59 0 1 15 2 0 52 0 1 10 1 0 29 chain 16104 chr6 171115067 + 51567029 51567368 L1PB1 5432 + 5114 5421 138042 21 1 0 4 0 4 6 5 0 7 2 0 3 2 0 9 2 0 52 2 1 15 1 0 39 50 37 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 1 0 5 chain 6940 chr6 171115067 + 51585950 51586037 MER85 139 + 41 139 177889 53 0 11 34 chain 4629 chr6 171115067 + 51610520 51610586 MSTD 398 + 331 398 199307 54 2 3 10 chain 4336 chr6 171115067 + 51614430 51614481 MIR 256 - 92 143 202759 51 chain 19270 chr6 171115067 + 51628747 51628951 L1PA2 6032 - 0 204 129318 204 chain 5181 chr6 171115067 + 51631542 51631598 L1PA3long 6157 + 6012 6068 193222 56 chain 78896 chr6 171115067 + 51632137 51633032 L1PA4 6152 - 1 918 44112 114 0 21 714 0 1 67 chain 3544 chr6 171115067 + 51649037 51649076 MADE1 96 - 1 40 214651 39 chain 73073 chr6 171115067 + 51661919 51662884 L1PA11 4918 - 3055 4020 46995 49 1 2 31 0 1 431 1 0 124 12 9 52 1 0 154 1 4 108 chain 37109 chr6 171115067 + 51669598 51670142 L1PA16 3655 + 3013 3556 73369 187 6 5 68 0 1 17 27 25 211 13 14 15 chain 12062 chr6 171115067 + 51670868 51671023 L1PA4 6152 + 5999 6143 151933 18 12 1 125 chain 488140 chr6 171115067 + 51713752 51720072 L1PA8A 6298 - 8 6264 7434 360 0 8 352 0 2 78 2 1 604 0 1 409 3 0 19 15 15 114 0 1 237 4 3 213 2 3 177 12 1 244 9 14 62 1 0 17 0 2 9 2 0 237 0 4 473 0 1 9 5 0 119 3 1 101 1 0 235 0 3 299 0 8 19 24 1 214 0 7 476 35 25 26 1 8 121 7 10 262 1 0 8 0 1 78 6 2 161 23 20 8 2 0 42 14 5 32 6 0 19 1 0 44 1 0 9 7 13 10 9 4 8 1 0 13 7 4 15 2 0 11 0 1 4 1 0 24 1 0 20 20 10 19 3 0 21 6 1 8 2 0 6 3 0 5 2 1 18 1 0 6 chain 562741 chr6 171115067 + 51739581 51745575 L1HS 6032 + 34 6030 280 3801 0 2 2193 chain 25452 chr6 171115067 + 51756059 51756376 AluSp 311 - 7 311 102446 11 13 0 293 chain 540051 chr6 171115067 + 51760454 51766473 L1PA3long 6157 + 1 6152 2811 151 0 1 422 0 4 197 0 128 458 0 1 1899 2 1 1378 2 0 30 1 0 639 0 4 339 2 0 499 chain 248499 chr6 171115067 + 51783016 51786070 L1PA8 5853 - 6 3148 16337 87 1 0 7 0 17 46 4 3 8 1 0 71 0 1 15 0 1 29 1 0 290 0 33 96 0 29 105 1 4 834 2 0 110 0 4 37 0 1 367 0 1 304 0 4 638 chain 32060 chr6 171115067 + 51803038 51803479 LTR7 482 + 0 476 80753 100 21 15 53 0 1 73 8 38 34 0 10 152 chain 290326 chr6 171115067 + 51803514 51807550 HERVH-int 3825 + 26 3825 13997 83 0 9 156 13 16 43 2 1 31 14 15 93 0 4 12 4 1 40 1 0 15 2 1 24 1 0 7 1 0 23 53 144 35 1 0 64 0 3 56 0 1 326 15 0 72 0 1 128 10 0 40 1 0 309 0 1 304 12 17 353 2 0 164 328 0 405 7 12 51 0 3 319 13 14 261 0 1 30 1 0 111 chain 29758 chr6 171115067 + 51806034 51806344 AluYb8 318 - 0 310 85618 310 chain 30719 chr6 171115067 + 51808780 51809208 LTR7 482 + 0 466 83003 100 21 15 34 0 1 18 0 1 73 5 36 36 0 10 37 5 6 99 chain 33207 chr6 171115067 + 51830889 51831320 MER4A1 472 - 14 472 78868 183 11 40 19 1 0 189 1 0 27 chain 12244 chr6 171115067 + 51839366 51839643 L1PB1 5432 + 5169 5422 151234 51 2 1 16 1 0 37 7 6 16 1 0 6 16 6 16 30 23 23 1 0 14 8 7 13 1 0 18 chain 130568 chr6 171115067 + 51846171 51847615 SVA_E 1901 + 0 1893 27952 96 1 31 26 2 0 126 1 0 44 4 1 330 0 1 157 0 424 657 chain 36232 chr6 171115067 + 51871530 51872128 L1PB1 5432 - 28 595 74585 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 2 0 16 1 0 44 18 16 52 2 0 9 7 3 10 5 4 4 1 0 24 1 0 7 10 9 166 0 1 94 chain 12492 chr6 171115067 + 51913967 51914128 Tigger3a 397 - 85 255 150281 82 3 12 76 chain 4307 chr6 171115067 + 51920773 51920848 MER20 218 - 0 74 203124 4 1 0 4 0 1 25 2 0 22 1 2 16 chain 5398 chr6 171115067 + 51926422 51926502 MADE1 96 + 0 96 191000 39 10 26 31 chain 555129 chr6 171115067 + 51955754 51961894 L1PA3long 6157 - 11 6151 814 84 0 1 1460 7 6 1747 1 0 1516 1 0 49 0 2 1275 chain 103069 chr6 171115067 + 51974625 51975847 L1PA5 6144 - 5 1197 35971 47 37 1 625 0 1 164 0 4 68 0 3 274 2 0 5 chain 104871 chr6 171115067 + 51977919 51979093 L1PA4 6152 + 4975 6151 35536 326 0 2 848 chain 55182 chr6 171115067 + 52025747 52026445 THE1D-int 1627 + 923 1616 55596 508 5 0 185 chain 81710 chr6 171115067 + 52032320 52033505 L1PA16 3655 + 2411 3590 42886 73 0 1 184 9 8 35 6 7 62 1 0 27 8 10 12 0 1 36 15 19 12 1 0 21 4 3 150 6 0 16 1 2 111 1 0 78 13 11 289 3 0 11 chain 24033 chr6 171115067 + 52033882 52034222 THE1A 353 - 0 353 110151 139 3 0 5 5 7 71 8 22 109 chain 124180 chr6 171115067 + 52034222 52035784 THE1A-int 1579 - 0 1579 29638 72 1 3 26 0 1 594 0 3 75 1 2 28 0 15 118 6 7 130 5 3 404 1 0 85 3 0 13 chain 28222 chr6 171115067 + 52035784 52036135 THE1A 353 - 0 353 92222 155 0 2 86 1 0 87 0 1 22 chain 185629 chr6 171115067 + 52069084 52071138 L1PA3long 6157 - 11 2119 20450 144 1 0 496 6 61 1407 chain 8644 chr6 171115067 + 52074000 52074114 AluJr 308 + 23 141 167506 102 1 5 11 chain 12269 chr6 171115067 + 52120858 52121017 MER1B 344 + 103 263 151117 27 3 4 129 chain 4081 chr6 171115067 + 52160229 52160277 MSTB 430 + 7 55 206178 48 chain 36278 chr6 171115067 + 52168650 52169112 LTR2 463 - 0 463 74526 88 15 16 359 chain 14074 chr6 171115067 + 52190249 52190421 MER51C 639 - 121 293 144310 172 chain 37217 chr6 171115067 + 52192406 52192862 LTR2 463 - 0 463 73215 252 8 10 73 0 1 69 2 6 52 chain 10782 chr6 171115067 + 52233585 52233764 THE1C 375 + 0 184 157066 13 2 0 7 1 0 26 0 7 17 20 21 93 chain 11546 chr6 171115067 + 52250221 52250398 L1PA16 3655 + 2614 2788 154118 61 1 0 8 5 6 44 1 0 48 2 0 7 chain 409260 chr6 171115067 + 52293012 52298413 L1PB1 5432 - 13 5408 9824 15 1 0 13 1 0 21 1 0 24 24 19 30 14 1 12 8 7 40 1 0 16 2 1 50 3 1 11 4 0 11 1 0 13 1 0 20 1 0 8 0 3 176 27 0 21 0 11 39 44 54 169 8 6 767 10 12 21 11 0 90 0 1 4 13 7 213 0 3 60 4 1 152 0 2 387 0 6 65 5 4 17 0 3 70 8 9 23 0 1 107 0 1 107 6 0 522 1 3 63 1 4 98 0 1 58 0 1 196 0 4 134 7 0 80 1 4 224 0 1 178 1 18 60 0 3 251 16 19 19 0 3 79 0 4 65 2 3 375 chain 528806 chr6 171115067 + 52307096 52313485 L1PA5 6144 - 0 6144 4327 113 0 1 593 0 9 2064 15 7 170 262 0 1484 1 0 474 1 0 58 9 0 993 7 19 24 1 15 120 chain 18672 chr6 171115067 + 52310099 52310313 L1PA2 6032 - 3 217 131025 214 chain 83141 chr6 171115067 + 52342319 52343236 L1PA2 6032 + 5114 6032 42279 580 1 2 336 chain 34985 chr6 171115067 + 52356378 52356839 LTR3B_ 500 - 0 500 76202 23 0 3 6 4 5 111 1 11 88 0 26 149 1 0 78 chain 19958 chr6 171115067 + 52427361 52427612 L1PA7 6471 - 5 258 127275 7 2 0 222 0 4 20 chain 4874 chr6 171115067 + 52448802 52448940 MER97c 529 + 53 186 196552 10 1 0 12 24 27 10 1 0 6 14 11 51 3 0 6 chain 4011 chr6 171115067 + 52457473 52457534 MLT1E2 623 - 517 577 207225 37 4 3 20 chain 87426 chr6 171115067 + 52465582 52466688 L1PA8 5853 + 4746 5853 40590 146 0 3 45 0 8 61 2 0 388 1 0 167 1 0 46 2 0 72 20 18 40 2 1 13 7 6 93 chain 49481 chr6 171115067 + 52473784 52474406 L1PA10 4194 - 44 667 59402 34 3 0 124 0 3 189 6 7 266 chain 18668 chr6 171115067 + 52478952 52479158 L1PA3long 6157 + 5949 6155 131033 206 chain 19315 chr6 171115067 + 52510004 52510305 THE1B 368 + 0 328 129198 81 1 18 4 0 1 65 1 0 19 45 55 85 chain 171512 chr6 171115067 + 52519795 52521773 SVA_D 2077 - 7 2076 21883 309 1 0 22 0 10 247 50 0 81 14 13 41 1 0 254 0 2 37 1 138 891 5 0 24 chain 3386 chr6 171115067 + 52520376 52520424 SVA_D 2077 - 998 1047 134651 41 0 1 7 chain 15522 chr6 171115067 + 52528287 52528468 MER107 203 - 1 184 139822 105 0 2 76 chain 42971 chr6 171115067 + 52569743 52570284 MER41A 554 + 0 554 65448 384 6 13 69 0 5 23 0 1 59 chain 43203 chr6 171115067 + 52574544 52575080 MER41A 554 + 2 554 65167 399 0 1 28 0 1 88 1 15 20 chain 20730 chr6 171115067 + 52576200 52576454 MER41A 554 - 0 256 124858 152 4 5 23 0 1 75 chain 22420 chr6 171115067 + 52584658 52584976 THE1D 372 + 0 332 118378 72 8 18 73 0 2 18 8 10 139 chain 4727 chr6 171115067 + 52585034 52585119 MLT1A0 366 + 226 316 198204 17 18 23 50 chain 22514 chr6 171115067 + 52595191 52595460 AluY 311 + 38 308 117967 94 0 1 175 chain 29356 chr6 171115067 + 52595460 52595961 HUERS-P3b-int 2065 + 1390 1857 87264 81 1 0 34 1 0 10 29 2 84 2 0 4 0 1 8 2 0 5 0 1 19 1 0 73 1 0 16 3 1 31 12 14 15 10 12 19 4 1 36 chain 2916 chr6 171115067 + 52598328 52598360 U2 167 - 135 167 226744 32 chain 87497 chr6 171115067 + 52613076 52614103 LTR5A 1029 - 0 1029 40565 253 9 11 229 0 1 335 0 1 4 1 0 48 1 0 147 chain 74459 chr6 171115067 + 52626627 52627596 LTR5_Hs 974 + 0 974 46296 212 0 1 246 0 4 163 10 9 25 0 1 13 3 5 22 5 1 14 0 2 58 7 7 191 chain 34267 chr6 171115067 + 52635590 52635973 L1PA4 6152 - 1 384 77256 383 chain 509883 chr6 171115067 + 52636025 52642170 L1PA2 6032 - 0 6031 6176 1866 0 2 273 1 0 26 6 7 2723 11 12 288 0 4 41 0 1 11 138 10 54 0 7 128 0 1 322 5 4 98 1 0 153 chain 3709 chr6 171115067 + 52651821 52651903 LTR12C 1709 + 881 1000 211813 14 22 59 46 chain 3672 chr6 171115067 + 52654440 52654804 MLT1C 463 + 64 427 212347 37 298 297 29 chain 5304 chr6 171115067 + 52669109 52669177 MER53 195 + 118 186 191977 68 chain 133913 chr6 171115067 + 52689549 52691167 SVA_A 1864 + 27 1864 27235 19 0 10 451 3 0 109 2 37 110 1 0 74 0 147 68 8 5 51 0 36 138 2 0 582 chain 3549 chr6 171115067 + 52693641 52693681 LTR12C 1709 - 832 872 214564 40 chain 65948 chr6 171115067 + 52707555 52708340 L1PA7 6471 - 5 792 50125 663 0 1 99 0 1 23 chain 5390 chr6 171115067 + 52711385 52711471 MER53 195 + 118 195 191086 67 9 0 10 chain 484049 chr6 171115067 + 52715848 52721811 L1PA7 6471 - 7 6467 7586 325 1 4 507 0 5 457 0 1 556 0 2 86 0 2 85 0 7 58 0 1 46 0 2 41 6 1 77 0 1 671 2 0 364 4 3 415 1 4 110 0 1 11 1 0 293 0 480 209 4 6 277 14 15 77 1 7 7 6 0 468 2 1 369 4 0 408 chain 527345 chr6 171115067 + 52725626 52732068 L1PA3long 6157 + 0 6157 4464 374 2 0 188 12 13 135 0 7 403 0 5 153 5 6 144 1 2 401 309 0 279 0 3 93 0 2 111 0 1 1497 0 4 471 0 2 1718 1 0 145 chain 26772 chr6 171115067 + 52727455 52727752 AluYa5 310 - 12 309 97079 297 chain 32717 chr6 171115067 + 52732083 52732457 L1PA4 6152 + 5768 6141 79657 44 1 0 329 chain 89608 chr6 171115067 + 52748046 52749062 LTR5A 1029 + 0 1029 39776 104 0 1 34 1 14 665 1 0 211 chain 42464 chr6 171115067 + 52763466 52764103 LTR10F 562 - 0 562 66056 87 2 0 96 20 0 98 9 15 10 62 0 21 1 4 231 chain 116915 chr6 171115067 + 52771221 52772522 L1PA3long 6157 + 4605 5898 32154 59 0 1 714 15 6 513 chain 22746 chr6 171115067 + 52772523 52772781 L1PA3long 6157 + 5898 6156 116845 258 chain 11254 chr6 171115067 + 52779673 52779803 LTR17 781 - 651 781 155212 130 chain 330529 chr6 171115067 + 52780117 52784325 HERV17-int 4347 - 0 4335 12182 388 1 6 333 1 0 521 0 2 353 314 0 314 2 0 888 0 11 54 0 1 23 0 1 105 1 0 19 5 4 516 35 35 18 0 430 77 0 1 108 1 0 26 2 0 35 1 0 51 1 0 15 chain 63528 chr6 171115067 + 52785952 52786712 LTR17 781 - 0 781 51234 31 0 22 401 1 0 327 chain 74848 chr6 171115067 + 52787477 52788438 LTR5_Hs 974 + 0 974 46092 115 5 13 161 0 1 366 1 0 163 8 15 19 20 18 103 chain 9362 chr6 171115067 + 52788438 52788559 HERVE-int 4064 + 3081 3202 163744 121 chain 79688 chr6 171115067 + 52808705 52809751 MER11C 1089 + 1 1063 43742 245 0 9 27 0 1 34 0 4 64 1 0 147 47 46 106 7 11 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 86590 chr6 171115067 + 52812495 52813511 LTR5A 1029 - 0 1029 40935 882 0 13 134 chain 24241 chr6 171115067 + 52814665 52814996 Tigger2a 444 + 0 347 108993 104 3 6 114 4 7 18 0 7 25 0 1 12 0 2 51 chain 3216 chr6 171115067 + 52823671 52823706 LTR12C 1709 - 0 35 220641 35 chain 215284 chr6 171115067 + 52823718 52826354 HERV9-int 5642 - 3085 5636 18146 117 0 1 121 1 0 111 6 0 899 1 0 201 4 0 7 80 0 309 1 0 357 0 7 421 chain 5750 chr6 171115067 + 52826997 52827160 LTR12C 1709 - 672 836 187637 29 78 0 21 0 78 19 0 1 16 chain 41667 chr6 171115067 + 52828376 52828935 MER9a3 513 + 14 513 67072 209 75 15 275 chain 33234 chr6 171115067 + 52838558 52838998 MLT2A1 477 + 0 477 78824 150 0 1 17 5 2 208 12 42 40 0 9 8 chain 6569 chr6 171115067 + 52843971 52844043 HY3 101 - 14 86 180702 72 chain 40876 chr6 171115067 + 52853667 52854222 MER41A 554 + 0 554 68054 74 3 0 180 2 1 88 1 0 53 9 13 71 1 2 4 1 0 68 chain 23252 chr6 171115067 + 52860417 52860662 7SK 245 + 0 245 114432 245 chain 10264 chr6 171115067 + 52864026 52864188 L1PA8 5853 + 5636 5793 159309 43 1 0 9 1 0 11 4 3 33 7 6 19 1 0 33 chain 8207 chr6 171115067 + 52897117 52897207 L1PA3long 6157 + 6067 6157 169917 90 chain 4331 chr6 171115067 + 52904222 52904270 LTR16E1 515 - 38 86 202829 48 chain 26464 chr6 171115067 + 52916755 52917088 L1PA8A 6298 - 13 347 98192 93 9 7 217 0 3 14 chain 8397 chr6 171115067 + 52921189 52921293 MER58A 224 - 82 186 168871 104 chain 4046 chr6 171115067 + 52937136 52937187 LTR16A 446 - 49 100 206715 51 chain 29253 chr6 171115067 + 52941990 52942298 AluYa5 310 + 0 309 87774 140 0 1 168 chain 22208 chr6 171115067 + 52954736 52955081 MER65A 464 - 2 383 119314 17 10 31 75 5 7 18 0 2 23 1 0 66 1 0 44 0 1 31 6 18 48 chain 7269 chr6 171115067 + 52955198 52955284 HY3 101 + 0 85 175657 21 1 0 64 chain 23452 chr6 171115067 + 52989381 52989663 AluSp 311 - 20 300 113372 5 2 0 275 chain 5895 chr6 171115067 + 53012658 53012727 U3 216 - 147 216 186226 69 chain 59489 chr6 171115067 + 53028126 53030238 L1PA17 2846 + 1638 2683 53118 92 1 0 49 0 1 27 643 26 22 4 6 24 8 7 100 1 7 100 7 6 268 0 8 16 7 9 49 60 57 21 1 0 42 518 57 17 1 0 34 chain 2838 chr6 171115067 + 53039467 53039497 MER33 330 - 256 286 228104 30 chain 6996 chr6 171115067 + 53045625 53045715 MER58B 340 + 122 212 177494 90 chain 11543 chr6 171115067 + 53064857 53065038 L1PA16 3655 - 80 282 154128 20 13 33 95 11 12 42 chain 25762 chr6 171115067 + 53069502 53069811 AluYk4 311 + 0 304 101034 17 1 0 277 4 0 10 chain 13018 chr6 171115067 + 53084058 53084218 U1 164 + 0 160 148182 160 chain 47145 chr6 171115067 + 53117662 53118859 L1PB1 5432 - 9 742 61093 19 2 1 11 2 1 21 1 0 24 2 0 14 1 0 5 3 1 15 8 0 15 4 1 15 1 0 43 1 0 12 6 5 52 2 0 9 5 1 14 1 0 6 1 0 24 447 11 132 0 3 199 10 7 57 0 2 13 chain 6162 chr6 171115067 + 53131699 53131770 MER58A 224 + 53 124 183868 71 chain 153660 chr6 171115067 + 53169266 53171049 SVA_D 2077 - 21 2077 24132 115 0 20 254 0 1 228 1 0 1 0 49 82 0 1 6 10 37 4 0 1 37 0 1 165 0 1 13 0 132 184 0 37 630 0 3 5 6 11 10 1 0 6 1 0 3 1 0 15 1 0 4 chain 42111 chr6 171115067 + 53182107 53182602 L1PA4 6152 + 5656 6151 66490 156 0 1 85 1 0 253 chain 38646 chr6 171115067 + 53210709 53211191 L1PA8 5853 - 4 480 71230 89 1 0 19 2 1 49 1 0 12 1 0 71 2 0 44 1 0 40 0 1 150 chain 6008 chr6 171115067 + 53226103 53226174 MER51A 677 - 606 677 185170 71 chain 10826 chr6 171115067 + 53227743 53228041 LTR12C 1709 - 641 1058 156888 35 82 1 13 3 44 14 41 0 48 0 200 62 chain 22610 chr6 171115067 + 53245706 53245980 AluSp 311 + 18 292 117540 274 chain 520068 chr6 171115067 + 53247533 53253986 L1PA6 6164 + 4 6162 5150 383 17 16 61 2 1 44 2 1 676 0 3 140 1 3 239 0 2 249 0 1 59 0 1 32 0 1 262 1 0 35 0 2 118 5 6 638 316 0 171 0 5 1129 0 1 82 0 4 114 3 0 338 1 6 5 0 1 482 1 0 847 chain 540454 chr6 171115067 + 53264858 53271018 L1PA4 6152 - 9 6146 2743 797 0 1 18 10 1 1624 8 0 165 0 1 2836 7 0 124 1 0 570 chain 102062 chr6 171115067 + 53345041 53346234 L1PA7 6471 - 5 1209 36247 143 6 5 186 0 1 119 0 2 126 0 1 85 0 2 169 0 6 359 chain 3834 chr6 171115067 + 53351714 53352204 L1MD1 2063 - 80 447 209854 24 1 0 7 296 179 23 16 15 12 5 2 14 70 69 22 chain 307236 chr6 171115067 + 53352290 53355714 L1PA4 6152 + 2724 6151 13121 485 1 0 925 0 1 5 2 1 215 0 4 941 1 0 264 0 1 585 chain 71633 chr6 171115067 + 53355913 53356754 L1PA7 6471 - 9 850 47637 144 1 0 613 4 5 79 chain 16430 chr6 171115067 + 53359218 53359569 THE1B 368 + 7 368 137118 101 121 132 66 7 6 56 chain 3458 chr6 171115067 + 53361503 53361556 MER5A1 166 + 32 92 216024 29 1 0 6 2 10 15 chain 24517 chr6 171115067 + 53413732 53413991 AluYa5 310 - 13 272 107464 259 chain 6698 chr6 171115067 + 53415545 53415629 MER4D1 891 + 1 85 179705 84 chain 127341 chr6 171115067 + 53416865 53418446 THE1A-int 1579 + 0 1579 28731 182 23 11 222 0 8 460 0 3 41 12 12 43 6 5 592 chain 26472 chr6 171115067 + 53418454 53418800 THE1A 353 + 8 353 98159 96 7 6 243 chain 31405 chr6 171115067 + 53420617 53421066 MER4A1 472 + 0 472 81809 127 4 5 92 40 62 186 chain 207252 chr6 171115067 + 53425090 53427764 MER4-int 2692 + 1 2691 18699 10 1 0 24 2 1 63 1 0 19 6 2 8 4 0 6 0 1 234 4 2 56 0 2 240 0 3 53 5 1 37 0 2 154 0 1 160 0 3 168 1 0 253 0 4 356 0 1 10 0 1 102 4 6 14 1 0 282 2 0 4 6 0 47 0 1 152 0 3 131 0 19 54 chain 45599 chr6 171115067 + 53434641 53435940 PABL_B 668 - 0 668 62405 148 0 2 167 8 7 21 1 0 18 1 45 19 0 1 142 683 6 19 0 1 72 chain 29416 chr6 171115067 + 53437184 53437695 L1PB1 5432 + 4918 5422 86999 42 7 17 74 1 0 47 0 16 24 1 0 6 1 0 13 7 3 8 2 0 51 3 2 15 1 0 43 2 1 16 19 6 24 2 0 6 1 0 14 8 6 18 1 0 22 2 1 10 2 1 18 chain 10149 chr6 171115067 + 53448105 53448270 MSTA 426 + 252 426 159850 18 7 8 4 1 0 18 9 17 50 0 1 58 chain 23960 chr6 171115067 + 53461967 53462339 MSTA 426 - 12 408 110564 201 6 8 24 46 68 95 chain 70519 chr6 171115067 + 53471154 53472264 L1PB1 5432 - 10 1053 48150 18 1 0 12 1 0 22 2 1 23 2 0 5 56 41 4 1 0 16 1 0 34 1 0 9 1 0 14 7 6 49 2 0 9 6 2 13 1 0 6 1 0 20 46 20 283 2 10 97 1 0 68 0 1 11 3 0 38 13 0 211 chain 3499 chr6 171115067 + 53499284 53499326 MADE1 96 + 2 44 215367 42 chain 24575 chr6 171115067 + 53509247 53509599 THE1C 375 + 0 370 107109 62 11 18 29 1 15 172 2 0 31 6 0 6 0 6 11 1 0 20 chain 84593 chr6 171115067 + 53540625 53541653 L1PA7 6471 + 5422 6468 41681 58 1 4 118 0 1 15 1 0 434 1 5 254 4 6 117 0 9 25 chain 24577 chr6 171115067 + 53585705 53586371 L1PB3 3668 - 476 837 107097 76 1 2 105 4 0 21 308 0 41 0 3 29 6 10 43 1 0 31 chain 1404 chr6 171115067 + 53593889 53593959 MER30 238 - 0 70 159185 70 chain 24931 chr6 171115067 + 53593968 53594265 AluY 311 + 15 311 105153 118 1 0 178 chain 1223 chr6 171115067 + 53594341 53594402 MER30 238 - 138 199 159185 61 chain 109997 chr6 171115067 + 53627837 53629341 L1PB3 3668 - 190 1673 34217 9 0 1 77 20 19 82 1 0 204 3 4 54 0 1 5 0 1 18 2 0 5 2 0 10 17 0 323 1 0 46 0 4 235 9 8 262 5 0 14 0 1 100 chain 539832 chr6 171115067 + 53638839 53644962 L1PA4 6152 + 13 6152 2840 2112 0 1 423 2 1 706 0 3 631 0 2 693 0 15 157 9 0 1384 0 5 6 chain 7702 chr6 171115067 + 53707094 53707179 L1PA6 6164 - 225 310 172924 85 chain 22851 chr6 171115067 + 53742734 53743058 THE1B 368 - 4 366 116335 34 0 19 111 0 2 26 8 6 14 9 13 80 0 15 42 chain 26646 chr6 171115067 + 53743111 53743523 MER1A 529 - 100 529 97493 147 1 7 178 1 5 11 5 1 17 39 50 13 chain 23703 chr6 171115067 + 53746871 53747150 AluSg 306 + 7 285 112014 111 1 0 167 chain 3790 chr6 171115067 + 53754738 53754793 LTR86B1 441 + 109 168 210525 6 0 6 28 2 0 19 chain 24486 chr6 171115067 + 53855635 53855987 THE1D 372 + 0 372 107624 26 1 0 48 9 8 86 17 24 106 1 15 25 0 1 33 chain 3562 chr6 171115067 + 53863809 53863852 Charlie8 480 + 151 194 214301 43 chain 6762 chr6 171115067 + 53901056 53901151 L1P1 4361 + 4248 4341 179231 57 1 0 23 2 1 12 chain 4705 chr6 171115067 + 53958664 53958720 MER58A 224 + 159 215 198466 56 chain 26222 chr6 171115067 + 54017136 54017476 THE1A 353 - 0 353 99117 45 1 2 60 0 13 123 1 0 110 chain 14464 chr6 171115067 + 54041371 54041566 L1PA10 4194 + 3958 4150 143007 124 5 6 5 1 0 23 3 0 34 chain 20137 chr6 171115067 + 54082930 54083328 Tigger3b 1229 - 34 458 126724 44 71 76 97 22 29 9 7 0 35 0 15 60 1 0 20 3 10 29 chain 29594 chr6 171115067 + 54089400 54089990 L1PB1 5432 - 8 558 86222 4 1 0 16 1 0 13 1 0 21 1 0 5 49 43 14 19 8 4 1 0 15 1 0 44 7 6 10 2 1 50 3 1 11 26 20 20 24 15 87 0 2 140 chain 14200 chr6 171115067 + 54090028 54090237 Tigger3a 397 - 87 358 143879 48 5 0 120 11 78 25 chain 77454 chr6 171115067 + 54097978 54098926 L1PA7 6471 - 1 930 44754 538 18 0 88 0 7 6 15 8 202 1 0 80 chain 118181 chr6 171115067 + 54140231 54141610 L1PA5 6144 - 0 1369 31734 149 1 2 502 4 0 197 1 0 59 19 13 447 chain 18684 chr6 171115067 + 54144152 54144392 AluSc8 310 + 6 265 130988 16 0 1 102 1 4 17 0 12 55 0 3 49 chain 83024 chr6 171115067 + 54145051 54145998 L1PA5 6144 + 5191 6139 42325 571 0 1 376 chain 85054 chr6 171115067 + 54161723 54162650 L1PA4 6152 - 1 928 41233 927 chain 115877 chr6 171115067 + 54162650 54163969 L1PA4 6152 + 3893 5212 32503 43 1 0 4 12 13 1259 chain 515386 chr6 171115067 + 54191952 54198411 L1PA7 6471 + 0 6456 5628 412 1 0 248 19 7 323 2 1 226 2 1 49 0 1 66 0 1 21 1 0 275 1 0 737 0 1 44 0 1 70 2 1 146 0 2 192 1 3 12 23 23 250 0 16 646 5 3 57 4 5 537 2 1 241 2 3 87 1 0 127 8 0 141 2 4 7 2 0 631 1 2 228 11 10 277 0 1 319 chain 34682 chr6 171115067 + 54244579 54245007 L1PA7 6471 - 2 431 76651 9 2 0 135 0 1 238 0 2 44 chain 2256 chr6 171115067 + 54248562 54248586 L1PA7 6471 + 5869 5893 235897 24 chain 48547 chr6 171115067 + 54248586 54249156 L1PA7 6471 + 5895 6465 60075 570 chain 31032 chr6 171115067 + 54266682 54267055 L1PA5 6144 - 0 372 82466 11 3 1 135 0 1 224 chain 279628 chr6 171115067 + 54270621 54273734 L1PA3long 6157 - 0 3114 14655 332 1 2 2780 chain 29660 chr6 171115067 + 54295344 54295723 MLT2A1 477 - 94 477 86026 60 1 0 150 1 5 24 1 2 142 chain 17368 chr6 171115067 + 54317131 54317349 THE1B 368 - 0 215 134601 174 2 0 21 2 1 19 chain 266755 chr6 171115067 + 54320242 54323308 L1PA5 6144 - 1918 4985 15350 544 1 0 524 1 0 776 1 5 64 2 0 595 1 2 557 chain 162061 chr6 171115067 + 54323315 54325167 L1PA5 6144 + 4237 6091 23055 974 0 1 4 1 0 81 0 4 218 1 0 357 12 11 204 chain 28588 chr6 171115067 + 54332523 54332877 THE1A 353 + 0 353 90791 110 1 0 243 chain 40386 chr6 171115067 + 54345070 54345576 L1PA7 6471 - 7 524 68760 108 0 10 67 0 2 81 0 1 66 5 1 20 0 2 159 chain 54527 chr6 171115067 + 54361868 54362547 L1PA6 6164 + 5481 6161 56015 207 0 1 129 8 10 326 2 0 7 chain 249168 chr6 171115067 + 54364468 54367284 L1PA4 6152 - 1 2836 16302 147 2 1 8 0 4 453 0 8 55 0 1 172 0 5 1046 0 1 311 0 1 622 chain 63925 chr6 171115067 + 54370667 54371369 L1PA3long 6157 - 1 704 51042 146 0 1 556 chain 102615 chr6 171115067 + 54371369 54372513 L1PA3long 6157 + 4302 5449 36103 339 1 0 667 1 5 136 chain 151288 chr6 171115067 + 54392688 54394798 L1PA6 6164 - 2 1797 24405 9 0 2 269 25 8 464 0 3 69 301 0 18 0 1 9 5 0 10 0 4 653 2 1 31 1 0 244 chain 155734 chr6 171115067 + 54394798 54396622 L1PA6 6164 + 2526 4363 23887 193 1 7 404 1 0 57 1 0 53 0 1 24 0 5 19 0 1 69 0 2 1002 chain 263369 chr6 171115067 + 54407656 54411644 L1PB1 5432 - 9 4678 15514 5 1 0 27 1 0 21 1 0 9 1 0 4 35 30 30 36 22 33 24 22 53 2 0 8 17 12 9 1 0 24 5 0 8 0 3 171 0 1 150 8 7 149 1 2 64 0 1 78 0 1 98 0 1 309 0 997 79 0 1 22 5 1 64 0 12 69 2 0 20 0 12 203 0 5 67 3 1 382 0 1 63 0 1 44 3 1 5 0 5 85 7 0 78 8 9 15 3 5 9 1 0 74 0 1 21 312 0 321 0 2 544 1 4 89 1 0 5 chain 4291 chr6 171115067 + 54415646 54415715 L1PREC2 3366 - 1559 1630 203348 36 5 7 28 chain 29615 chr6 171115067 + 54420100 54420431 L1PA3long 6157 + 5818 6149 86162 331 chain 222034 chr6 171115067 + 54420500 54423363 L1PA8 5853 + 2959 5847 17757 162 0 2 88 13 3 264 0 1 138 1 0 4 1 2 148 1 0 44 0 21 72 0 4 294 4 10 124 0 1 28 5 8 62 15 15 39 1 0 69 5 3 87 0 2 133 0 2 195 0 4 18 0 2 100 2 0 452 6 5 44 2 0 71 1 0 13 13 12 35 2 1 19 1 0 87 chain 40937 chr6 171115067 + 54430848 54431296 L1PA3long 6157 + 5694 6142 67989 448 chain 42551 chr6 171115067 + 54436985 54437496 L1PA7 6471 - 1 512 65962 511 chain 38907 chr6 171115067 + 54437496 54438139 L1PB1 5432 - 751 1361 70857 60 120 93 234 0 1 89 7 0 133 chain 14354 chr6 171115067 + 54438155 54438339 L1PB1 5432 - 1395 1573 143360 84 8 1 22 0 1 70 chain 27368 chr6 171115067 + 54445475 54445776 AluYa5 310 - 11 310 95056 167 2 0 132 chain 18077 chr6 171115067 + 54461741 54462131 MER44B 551 - 79 475 132654 14 1 0 177 128 133 20 6 8 44 chain 83749 chr6 171115067 + 54470054 54471111 L1PA8A 6298 - 7 1072 42014 90 10 0 5 0 11 612 1 0 82 3 2 16 0 4 142 5 10 91 chain 7708 chr6 171115067 + 54508919 54509015 L1PA4 6152 - 16 337 172880 84 0 225 12 chain 33821 chr6 171115067 + 54516363 54516750 L1PA4 6152 + 5755 6143 77905 248 0 1 139 chain 6248 chr6 171115067 + 54525633 54525705 L1PA8 5853 + 5484 5558 183177 36 0 2 36 chain 9880 chr6 171115067 + 54525712 54525842 L1PA8 5853 + 5564 5691 161174 44 2 0 72 2 1 10 chain 11319 chr6 171115067 + 54525846 54526010 L1PA8 5853 + 5691 5853 155001 43 9 8 21 1 0 90 chain 25463 chr6 171115067 + 54534612 54534915 AluY 311 + 0 299 102389 126 4 0 173 chain 158179 chr6 171115067 + 54537021 54538810 L1P1 4361 + 2523 4310 23563 1189 5 4 100 0 1 334 1 0 154 1 0 5 chain 5867 chr6 171115067 + 54556149 54556422 MER33 330 + 23 325 186515 55 170 191 25 3 11 20 chain 6226 chr6 171115067 + 54582362 54582440 MER11A 1151 - 0 76 182136 42 1 0 24 1 0 10 chain 7875 chr6 171115067 + 54582440 54582530 MER11B 1079 - 989 1079 171840 90 chain 115012 chr6 171115067 + 54592801 54594125 L1PA5 6144 + 4823 6143 32790 448 2 1 22 1 0 244 1 0 444 21 20 141 chain 18209 chr6 171115067 + 54598616 54598926 L1PA14 3548 - 2000 2309 132313 32 68 67 210 chain 3444 chr6 171115067 + 54604262 54604674 L1MD1 2063 - 80 367 216289 19 345 223 19 3 0 26 chain 3511 chr6 171115067 + 54625053 54625174 MER96B 391 - 33 154 215211 16 35 39 10 1 0 5 1 0 21 8 6 24 chain 6974 chr6 171115067 + 54652266 54652436 L1MA8 2339 + 1933 2116 177655 25 4 0 51 1 0 4 35 36 26 8 25 16 chain 175230 chr6 171115067 + 54653301 54655271 L1PA5 6144 + 4166 6140 21429 155 0 2 28 0 2 1787 chain 127920 chr6 171115067 + 54661256 54662833 THE1A-int 1579 + 0 1579 28593 579 0 1 300 0 2 211 2 1 383 6 7 15 1 0 80 chain 431680 chr6 171115067 + 54683817 54689625 L1PA8 5853 - 0 5803 9278 88 25 10 14 2 1 33 24 22 6 1 0 69 2 0 46 1 0 41 0 2 27 2 0 288 1 5 5 3 0 184 2 0 8 2 0 367 5 378 99 0 3 374 0 1 36 0 1 168 3 4 90 1 0 88 5 6 253 0 1 1273 0 6 148 22 2 361 0 8 184 303 0 851 12 0 190 53 17 13 1 0 11 2 0 21 chain 107680 chr6 171115067 + 54702968 54704117 L1HS 6032 - 0 1149 34804 1149 chain 33935 chr6 171115067 + 54704117 54704476 L1HS 6032 + 4523 4882 76899 359 chain 27966 chr6 171115067 + 54716437 54716744 AluYa5 310 - 6 310 93123 5 3 0 299 chain 8414 chr6 171115067 + 54730133 54730307 MLT1C 463 - 266 432 168761 19 28 26 17 12 7 4 1 0 93 chain 37161 chr6 171115067 + 54746579 54747009 L1PA5 6144 - 15 446 73294 17 0 1 413 chain 24817 chr6 171115067 + 54750483 54750760 L1PA4 6152 + 5859 6136 105791 277 chain 30345 chr6 171115067 + 54780322 54780639 AluYb8 318 + 0 317 83786 317 chain 3159 chr6 171115067 + 54788878 54788914 L1MA6 2487 - 108 144 221754 36 chain 86764 chr6 171115067 + 54803046 54804247 L1PB2 3958 - 124 1314 40861 59 2 1 17 4 0 6 6 10 59 2 1 64 1 0 72 1 0 93 6 0 12 3 1 46 0 2 17 5 0 13 0 3 51 2 0 49 0 4 65 0 1 4 1 0 260 1 0 280 chain 541954 chr6 171115067 + 54826227 54832235 L1PA3long 6157 + 5 6147 2513 147 0 1 211 0 1 403 8 136 5198 0 4 41 chain 130363 chr6 171115067 + 54843852 54845402 LTR12C 1709 + 0 1709 28001 699 0 159 179 1 3 72 1 0 5 3 1 76 3 0 30 0 4 53 0 1 214 1 0 213 chain 29088 chr6 171115067 + 54864378 54864689 AluYa5 310 + 0 310 88601 97 1 0 213 chain 405572 chr6 171115067 + 54890923 54896562 L1PB1 5432 - 12 5408 9924 16 1 0 13 1 0 21 1 0 21 73 55 14 10 9 34 1 0 16 2 1 50 2 0 12 4 0 12 1 0 8 1 0 24 1 0 7 8 7 103 1 0 166 16 24 186 3 0 109 0 4 43 0 22 83 295 0 196 5 4 428 1 4 522 1 0 198 1 0 174 2 0 244 0 4 83 10 9 496 0 1 586 1 2 142 6 26 428 0 1 217 0 4 179 7 17 27 8 8 122 11 28 156 7 8 22 chain 96810 chr6 171115067 + 54901192 54902369 L1PA6 6164 - 3 1178 37608 147 12 12 846 2 0 170 chain 26383 chr6 171115067 + 54921190 54921492 AluYk4 311 - 9 311 98483 302 chain 3011 chr6 171115067 + 54951499 54951531 MLT1B 390 + 65 97 224798 32 chain 453608 chr6 171115067 + 54954662 54959971 L1PA5 6144 + 784 6135 8633 27 0 17 209 0 1 131 9 0 119 0 1 251 0 22 884 3 4 175 9 6 430 0 4 128 0 1 487 0 1 476 0 1 463 1 0 366 0 5 301 1 0 173 0 2 666 chain 478734 chr6 171115067 + 54983590 54992324 L1PA7 6471 - 6 6470 7773 6 2 0 482 1 7 326 4 5 9 0 6 21 7 11 47 1 2 99 1 0 475 0 15 286 0 4 236 2375 0 111 0 2 624 0 1 78 0 1 41 13 21 25 0 2 422 3 7 136 1 2 127 0 1 71 0 4 120 7 1 878 5 4 393 1 0 62 23 42 145 1 0 31 7 8 70 8 17 78 4 4 26 1 16 35 1 2 73 0 5 6 8 15 144 3 0 78 0 1 24 2 1 4 0 1 6 1 0 50 2 0 149 145 149 113 chain 114432 chr6 171115067 + 54986098 54987417 L1P1 4361 - 44 1373 32961 12 1 0 155 1 0 46 0 13 53 0 1 359 2 0 690 chain 44367 chr6 171115067 + 54987417 54987919 L1PA5 6144 + 5636 6138 63736 502 chain 23452 chr6 171115067 + 55008900 55009186 AluSp 311 - 0 284 113371 29 0 2 155 4 0 98 chain 521178 chr6 171115067 + 55022808 55029579 L1PA7 6471 + 0 6469 5039 65 1 2 172 0 2 164 1 2 282 9 10 214 0 3 5 3 0 346 41 10 218 0 3 526 5 6 183 0 1 259 0 1 82 10 11 69 1 2 186 1 3 641 0 1 29 1 2 22 2 1 475 7 5 21 2 0 682 0 20 68 0 1 155 308 0 395 1 0 269 0 3 839 0 2 11 chain 61765 chr6 171115067 + 55035389 55036085 L1PA5 6144 - 6 704 52011 148 0 1 184 0 1 364 chain 19517 chr6 171115067 + 55075732 55076006 Tigger3a 397 + 38 364 128607 37 16 67 153 0 1 68 chain 24178 chr6 171115067 + 55089141 55089437 AluY 311 + 8 296 109327 110 4 0 15 1 0 150 3 0 13 chain 6327 chr6 171115067 + 55094140 55094363 L1MB1 2102 + 1693 1927 182570 44 88 100 19 34 33 38 chain 24768 chr6 171115067 + 55104898 55105182 AluYk4 311 + 25 308 106069 107 1 0 176 chain 25298 chr6 171115067 + 55105773 55106052 L1PA3long 6157 - 0 280 103241 147 0 1 132 chain 12725 chr6 171115067 + 55126009 55126193 L1PB1 5432 + 4590 4771 149350 36 4 0 8 5 6 131 chain 11507 chr6 171115067 + 55130677 55130821 MER107 203 + 0 145 154266 77 0 1 67 chain 33634 chr6 171115067 + 55155760 55156179 L1PA7 6471 + 5710 6131 78195 60 7 8 143 0 1 209 chain 20799 chr6 171115067 + 55156179 55156461 L1PA7 6471 + 6189 6469 124602 270 2 0 10 chain 51812 chr6 171115067 + 55159494 55160118 L1PA7 6471 + 5688 6305 57745 161 1 0 258 16 11 16 1 0 171 chain 13656 chr6 171115067 + 55160128 55160282 L1PA7 6471 + 6316 6470 145755 154 chain 13811 chr6 171115067 + 55162299 55162451 L1PA5 6144 + 5986 6138 145217 152 chain 318454 chr6 171115067 + 55173196 55176704 L1PA3long 6157 - 2289 5798 12650 292 0 1 3216 chain 204719 chr6 171115067 + 55176708 55179000 L1PA3long 6157 + 3861 6157 18874 1169 0 1 965 0 3 158 chain 3257 chr6 171115067 + 55179790 55179828 L1MA7 2200 - 1348 1386 219814 38 chain 19976 chr6 171115067 + 55180950 55181194 L1PA4 6152 - 9 252 127219 110 6 5 128 chain 527119 chr6 171115067 + 55205345 55211490 L1PA5 6144 + 3 6134 4488 117 19 19 1251 4 0 10 0 4 29 1 0 576 1 0 13 2 1 1282 16 3 34 0 5 162 2 0 316 2 0 813 2 0 659 0 4 576 9 8 249 chain 8438 chr6 171115067 + 55220029 55220132 L1PA8A 6298 + 6186 6289 168641 103 chain 550503 chr6 171115067 + 55228234 55234265 L1PA2 6032 - 0 6030 1375 5776 1 0 254 chain 20101 chr6 171115067 + 55248842 55249076 L1PA7 6471 + 6232 6467 126823 225 0 1 9 chain 30063 chr6 171115067 + 55262034 55262348 AluYb8 318 + 0 314 84617 314 chain 6358 chr6 171115067 + 55346164 55346322 L1MA3 4352 + 4176 4328 182321 33 25 21 30 2 0 5 17 19 4 1 0 26 1 0 14 chain 33372 chr6 171115067 + 55352101 55352498 L1PA7 6471 - 7 403 78613 7 1 0 389 chain 7707 chr6 171115067 + 55356065 55356154 L1PA5 6144 + 6051 6140 172889 89 chain 6645 chr6 171115067 + 55369375 55369458 MER2 342 - 127 211 180129 79 0 1 4 chain 47510 chr6 171115067 + 55375083 55375599 L1PA3long 6157 + 5641 6157 60837 516 chain 18462 chr6 171115067 + 55384797 55385004 L1PA7 6471 + 6211 6418 131606 207 chain 3359 chr6 171115067 + 55385004 55385046 L1PA7 6471 + 6419 6461 217884 42 chain 45963 chr6 171115067 + 55447995 55448499 L1PA3long 6157 - 0 504 62070 504 chain 80602 chr6 171115067 + 55451203 55452147 L1PA4 6152 - 9 955 43219 104 0 1 166 1 0 79 3 0 38 0 3 276 0 2 277 chain 284590 chr6 171115067 + 55452147 55455410 L1PA4 6152 + 1918 5201 14380 94 0 14 1150 2 1 394 0 1 206 0 1 111 0 2 151 0 1 824 11 13 320 chain 30805 chr6 171115067 + 55463722 55464071 L1PA7 6471 + 6121 6470 82854 349 chain 111120 chr6 171115067 + 55475768 55477327 L1PA10 4194 + 2143 4161 33905 378 21 469 184 0 1 66 18 19 37 21 28 95 0 1 243 0 7 30 1 0 162 0 2 217 3 0 32 12 9 27 1 0 11 chain 23480 chr6 171115067 + 55488586 55488900 HERVL-int 5654 - 3429 3758 113220 48 1 13 22 6 0 58 1 10 178 chain 267152 chr6 171115067 + 55488901 55492298 HERVL-int 5654 + 2238 5654 15334 17 14 15 15 15 15 1055 0 3 493 1 0 90 0 10 182 0 1 233 0 4 53 6 7 78 4 7 337 0 8 175 3 0 5 0 6 178 25 10 251 7 8 160 chain 29219 chr6 171115067 + 55492298 55492678 MLT2A1 477 + 0 385 87967 140 1 2 20 7 11 212 chain 41885 chr6 171115067 + 55506712 55507158 L1PA2 6032 - 7 453 66782 446 chain 9025 chr6 171115067 + 55508179 55508296 L1PREC2 3366 - 646 762 165468 5 1 0 111 chain 48279 chr6 171115067 + 55512567 55513086 L1HS 6032 - 1 520 60263 519 chain 64673 chr6 171115067 + 55513086 55513805 L1P1 4361 + 3054 3773 50707 719 chain 537541 chr6 171115067 + 55549457 55555481 L1PA3long 6157 + 0 6156 3229 153 0 1 528 0 1 93 0 128 4422 0 1 47 0 1 781 chain 13343 chr6 171115067 + 55580478 55580661 MER30 238 + 39 238 146923 55 0 2 8 3 17 117 chain 26472 chr6 171115067 + 55584202 55584481 AluYd8 298 - 10 289 98160 279 chain 25597 chr6 171115067 + 55588744 55589057 AluY 311 + 6 309 101741 120 10 0 183 chain 15700 chr6 171115067 + 55594958 55595127 L1HS 6032 - 0 169 139267 169 chain 538722 chr6 171115067 + 55600337 55606482 L1PA4 6152 + 3 6151 3038 1233 0 1 197 1 0 49 0 1 822 2 7 4 1 0 462 0 4 394 1 0 109 1 0 1343 4 0 691 0 1 497 2 1 332 chain 3242 chr6 171115067 + 55615037 55615196 MER58A 224 + 51 221 220198 21 85 95 21 10 11 22 chain 25438 chr6 171115067 + 55661300 55661590 L1PA3long 6157 - 0 290 102511 290 chain 193370 chr6 171115067 + 55670202 55672660 L1PA8A 6298 - 252 2762 19746 117 19 61 226 5 3 423 9 9 988 0 1 44 5 6 63 0 5 227 1 2 50 17 20 141 0 1 123 chain 10982 chr6 171115067 + 55681659 55681790 L1PA4 6152 + 5253 5384 156264 131 chain 68787 chr6 171115067 + 55681791 55682558 L1PA4 6152 + 5384 6151 48904 767 chain 5292 chr6 171115067 + 55718427 55718553 MER97d 503 + 24 142 192101 20 38 29 14 1 0 30 0 2 23 chain 31864 chr6 171115067 + 55723487 55723929 L1PA8 5853 + 5399 5853 81075 165 0 16 28 2 0 70 2 1 11 6 5 33 0 7 5 2 1 19 3 2 67 5 0 24 chain 5523 chr6 171115067 + 55728435 55728549 Tigger3b 1229 + 9 121 189815 14 34 32 66 chain 150166 chr6 171115067 + 55774115 55775827 SVA_D 2077 - 0 2065 24592 535 1 0 105 0 49 209 0 309 42 40 0 194 0 40 385 1 0 181 1 0 6 1 0 6 1 0 4 chain 26375 chr6 171115067 + 55786185 55786493 AluY 311 + 0 307 98509 48 1 0 84 0 1 127 2 1 46 chain 54227 chr6 171115067 + 55792399 55793097 L1PA8 5853 - 0 700 56209 29 27 29 35 1 0 17 3 13 29 1 3 10 7 0 9 1 0 70 2 0 45 1 0 411 chain 9328 chr6 171115067 + 55815607 55815854 LTR12C 1709 + 843 1203 163906 46 5 124 55 4 51 19 62 21 13 16 4 27 chain 5279 chr6 171115067 + 55815905 55816055 LTR12C 1709 + 650 718 192216 27 82 0 41 chain 281975 chr6 171115067 + 55877313 55881183 HERVH-int 3825 - 0 3825 14537 320 0 6 30 0 1 130 8 218 1113 1 5 135 3 4 147 4 31 157 0 1 57 1 0 38 10 1 208 6 0 3 9 0 317 0 1 113 0 1 4 1 0 5 1 0 61 142 114 24 1 0 10 1 0 40 242 0 45 10 12 107 1 2 31 1 0 333 chain 4714 chr6 171115067 + 55880535 55880602 HERVH-int 3825 - 3035 3096 198352 7 6 0 54 chain 10294 chr6 171115067 + 55899227 55899355 L1PA5 6144 + 6018 6144 159160 114 3 1 11 chain 8234 chr6 171115067 + 55979163 55979253 L1P1 4361 - 1265 1355 169246 90 chain 76856 chr6 171115067 + 55979253 55980105 L1PA2 6032 + 5151 6027 45053 560 1 23 150 0 7 130 5 0 6 chain 29255 chr6 171115067 + 56050224 56050532 AluYb8 318 - 10 318 87765 308 chain 364898 chr6 171115067 + 56053246 56058119 L1PA7 6471 + 761 6470 11231 73 0 1 21 0 1 135 24 34 68 6 0 111 6 4 41 1 20 1114 0 1029 172 0 2 248 0 1 262 0 1 172 25 9 39 0 1 277 0 1 75 292 0 82 0 5 126 5 46 291 0 1 284 0 20 33 8 0 62 0 1 79 0 1 248 0 20 351 0 5 142 chain 117564 chr6 171115067 + 56065112 56066426 L1PA4 6152 - 8 1324 31941 164 2 4 1148 chain 501844 chr6 171115067 + 56068470 56075063 L1PA7 6471 + 3 6469 6734 165 13 13 20 1 0 39 5 5 152 1 2 6 16 0 177 0 11 184 0 1 4 7 0 23 7 6 160 0 1 44 10 11 141 15 11 236 0 3 674 0 2 538 6 0 365 61 13 527 7 11 287 0 1 83 0 1 286 1 3 94 1 0 174 2 1 21 23 31 76 0 2 156 1 2 49 0 1 161 1 0 354 106 2 291 1 0 84 1 2 143 0 2 116 0 1 227 0 19 46 16 13 6 0 4 151 2 1 4 0 1 25 chain 4834 chr6 171115067 + 56073847 56073905 L1PA7 6471 + 5335 5393 196968 58 chain 7012 chr6 171115067 + 56105180 56105276 MLT1A1 405 + 292 389 177382 13 5 7 20 1 0 57 chain 2797 chr6 171115067 + 56111668 56111707 MER5B 177 - 67 107 228771 22 1 2 16 chain 21275 chr6 171115067 + 56141944 56142195 L1PA5 6144 - 0 251 122944 251 chain 4765 chr6 171115067 + 56155025 56155208 MER20 218 - 0 184 197753 28 114 115 41 chain 542506 chr6 171115067 + 56166520 56172668 L1PA4 6152 - 11 6151 2423 138 6 9 41 21 0 1345 4 3 2352 1 0 431 0 4 711 0 8 1098 chain 3589 chr6 171115067 + 56187641 56187680 tRNA-Met-i 72 + 33 72 213850 39 chain 3188 chr6 171115067 + 56205099 56205136 L1MC2 1988 + 1506 1543 221150 37 chain 6780 chr6 171115067 + 56216911 56217002 MER96B 391 + 90 180 179112 16 1 0 74 chain 23279 chr6 171115067 + 56243474 56244173 L1M1 2793 + 510 1094 114298 10 3 0 14 11 9 8 2 0 11 3 0 7 1 0 10 4 3 8 3 0 9 36 20 16 81 19 7 0 6 14 0 3 18 40 27 10 4 0 5 2 0 15 10 7 6 2 0 17 18 17 24 3 1 8 1 0 54 5 3 6 1 0 43 1 5 17 4 0 36 9 8 5 0 1 77 chain 48808 chr6 171115067 + 56264356 56264938 LTR22 571 + 0 571 59873 82 1 0 173 11 0 284 0 1 31 chain 56217 chr6 171115067 + 56286496 56287312 L1PB2 3958 + 3040 3838 55011 11 0 2 147 11 7 101 2 0 53 1 0 10 4 0 64 6 3 13 4 0 94 4 3 70 1 0 63 5 4 56 0 2 32 1 0 63 chain 40805 chr6 171115067 + 56361521 56361972 L1PA3long 6157 + 5706 6157 68165 451 chain 302693 chr6 171115067 + 56427398 56431455 L1PA7 6471 - 8 6471 13294 109 0 4 20 9 8 317 0 2 5 2 0 6 0 2 374 0 2 35 0 1 30 0 1 7 1 0 66 0 5 95 1 0 175 0 4 517 0 4 214 0 1 201 0 3 95 5 9 147 0 3 61 328 0 151 0 3 6 17 2715 281 0 3 368 1 0 202 14 14 197 chain 356360 chr6 171115067 + 56447406 56451384 L1PA4 6152 - 0 3993 11446 9 0 12 1254 0 4 2186 2 1 527 chain 131429 chr6 171115067 + 56451384 56452895 L1PA4 6152 + 668 2172 27741 30 7 0 1474 chain 27894 chr6 171115067 + 56498031 56498323 AluYa5 310 - 18 310 93386 292 chain 9980 chr6 171115067 + 56540702 56540845 L1MA8 2339 + 1498 1634 160677 111 7 0 25 chain 13355 chr6 171115067 + 56549946 56550292 L1PA17 2846 + 2369 2689 146865 60 14 11 59 4 0 18 135 117 15 1 0 40 chain 9004 chr6 171115067 + 56571405 56571516 MER1B 344 - 78 186 165570 5 3 0 103 chain 85290 chr6 171115067 + 56584449 56586396 MER11C 1089 - 16 1089 41423 169 0 1 33 0 1 125 9 10 42 0 4 238 0 1 63 1 0 8 894 0 61 0 4 58 0 9 246 chain 65388 chr6 171115067 + 56585151 56586011 SVA_B 1603 - 0 890 50383 610 1 4 18 3 0 22 0 1 20 2 0 81 2 1 12 43 0 18 12 87 16 chain 34176 chr6 171115067 + 56591792 56592226 MER4A1 472 + 0 457 77383 109 0 1 57 0 1 58 5 26 205 chain 43686 chr6 171115067 + 56604292 56605081 MER41A 554 + 0 554 64585 315 1 2 4 1 0 109 243 8 116 chain 4073 chr6 171115067 + 56615103 56615150 U6 107 - 60 107 206283 47 chain 116316 chr6 171115067 + 56643187 56644507 L1PA4 6152 - 0 1325 32337 6 0 5 1314 chain 552710 chr6 171115067 + 56644534 56650664 L1PA3long 6157 - 9 6157 1109 1212 0 1 123 0 1 139 0 3 3629 1 0 329 0 14 125 0 4 347 4 0 221 chain 7110 chr6 171115067 + 56664731 56664827 Tigger1 2417 + 2226 2320 176689 26 2 0 68 chain 59010 chr6 171115067 + 56677552 56678192 L1PA3long 6157 + 5517 6157 53389 640 chain 134907 chr6 171115067 + 56688783 56690315 SVA_D 2077 + 11 2077 27028 376 0 3 163 0 40 285 0 359 13 0 37 15 4 16 8 0 87 649 4 0 15 chain 20131 chr6 171115067 + 56697047 56697393 THE1B 368 + 64 368 126743 71 30 7 14 1 0 16 3 2 18 2 0 47 10 0 48 15 10 71 chain 28535 chr6 171115067 + 56734907 56735230 LTR17 781 + 3 326 91022 323 chain 9709 chr6 171115067 + 56757833 56758347 L1PB1 5432 - 19 501 43859 9 1 0 13 1 0 21 1 0 24 2 0 11 48 34 21 2 1 42 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 13 11 172 chain 174364 chr6 171115067 + 56758396 56760789 SVA_E 1901 - 0 1886 21556 750 1 0 193 1 0 31 3 0 110 501 0 664 1 0 138 chain 3412 chr6 171115067 + 56759485 56759534 SVA_E 1901 - 863 911 138720 23 1 0 25 chain 3281 chr6 171115067 + 56759583 56759619 SVA_E 1901 - 911 947 184373 36 chain 19764 chr6 171115067 + 56759619 56759838 SVA_E 1901 - 723 941 127923 83 1 0 135 chain 2788 chr6 171115067 + 56759838 56759877 SVA_E 1901 - 767 806 131670 39 chain 2440 chr6 171115067 + 56759877 56759912 SVA_E 1901 - 679 714 139090 35 chain 3855 chr6 171115067 + 56759912 56759953 SVA_E 1901 - 1012 1053 177099 41 chain 20608 chr6 171115067 + 56760947 56762038 L1PB1 5432 - 501 1228 43859 42 357 0 208 4 1 52 3 0 258 0 1 87 1 2 23 15 19 26 7 0 8 chain 28460 chr6 171115067 + 56760994 56761346 THE1A 353 + 0 353 91335 108 1 0 111 1 0 14 10 13 107 chain 45246 chr6 171115067 + 56773372 56773926 MER41A 554 + 0 554 62773 554 chain 5884 chr6 171115067 + 56788935 56789020 MLT2B4 540 - 442 540 186344 11 1 15 5 1 0 67 chain 64903 chr6 171115067 + 56796017 56796842 THE1A-int 1579 + 768 1574 50607 541 2 1 158 0 7 68 25 0 31 chain 5504 chr6 171115067 + 56810538 56810603 U6 107 + 11 76 190001 65 chain 61310 chr6 171115067 + 56864661 56865383 SVA_A 1864 + 450 1862 52201 23 0 671 38 1 4 59 2 0 264 0 3 206 0 15 129 chain 7680 chr6 171115067 + 56865855 56865953 L1PA15-16 3068 + 808 906 173046 98 chain 5924 chr6 171115067 + 56868354 56868586 L1PA15-16 3068 + 2626 2821 185951 25 23 19 17 4 2 18 82 56 26 2 0 13 2 0 13 1 0 6 chain 12266 chr6 171115067 + 56873387 56873566 L1MA5A 2387 + 1570 1748 151129 34 2 4 28 2 0 103 1 0 9 chain 34022 chr6 171115067 + 56893677 56894244 LTR8 732 + 0 576 77588 97 0 2 37 5 9 12 1 0 36 5 8 112 1 0 73 18 17 27 54 57 89 chain 14435 chr6 171115067 + 56896785 56896994 MER50 708 - 8 203 143092 136 17 4 23 1 0 32 chain 145689 chr6 171115067 + 56907696 56909874 L1PB1 5432 + 3300 5416 25226 225 4 5 186 33 20 119 0 4 209 6 7 68 0 1 243 0 3 69 4 8 162 3 0 79 1 0 15 46 46 193 21 17 119 48 16 24 28 23 7 2 0 49 3 2 18 1 0 45 1 0 20 1 0 11 45 37 20 1 0 22 1 0 12 1 0 8 1 0 4 chain 243927 chr6 171115067 + 56935913 56939085 HERVK22-int 3844 + 1 3844 16568 236 1 0 19 0 1 303 0 1 819 1 0 97 0 4 161 16 17 366 16 20 21 0 2 83 25 0 54 0 1 271 0 2 168 23 22 91 8 36 6 1 0 207 3 656 48 1 6 25 33 32 56 1 0 12 chain 12878 chr6 171115067 + 56945785 56945930 L1PA4 6152 + 6006 6151 148712 145 chain 3335 chr6 171115067 + 56964784 56964827 MIRc 230 + 132 181 218312 6 0 6 37 chain 3131 chr6 171115067 + 57027961 57027997 MADE2 80 - 0 36 222344 36 chain 3830 chr6 171115067 + 57040090 57040134 MER21A 919 + 26 70 209947 44 chain 9623 chr6 171115067 + 57055770 57055912 L1MB3 1562 - 215 359 162474 55 17 19 70 chain 134442 chr6 171115067 + 57101224 57102723 L1PA5 6144 - 9 1509 27119 501 0 1 998 chain 80881 chr6 171115067 + 57102725 57103633 L1P1 4361 + 2345 3253 43238 908 chain 51204 chr6 171115067 + 57119243 57119901 PABL_A 660 + 0 660 58185 201 7 6 132 0 1 236 11 13 71 chain 537612 chr6 171115067 + 57133433 57139576 L1PA3long 6157 - 0 6157 3216 842 1 5 944 0 4 1091 0 1 743 9 11 1799 0 7 579 4 0 131 chain 234380 chr6 171115067 + 57149628 57152572 L1PA8 5853 + 2894 5853 17073 13 2 3 49 0 5 248 5 2 6 0 1 49 1 2 104 0 2 378 0 13 103 0 1 17 0 2 1115 0 2 27 4 1 386 1 0 141 15 14 30 2 0 73 1 0 7 1 0 6 0 1 48 1 0 9 9 8 93 chain 501488 chr6 171115067 + 57152602 57158774 L1PA6 6164 + 0 6162 6758 190 6 7 225 6 5 22 19 0 118 26 25 131 1 2 14 10 9 48 1 18 1392 7 11 107 6 1 47 48 1 420 0 4 214 0 1 210 0 1 15 0 1 240 5 8 206 0 1 464 0 1 651 0 8 500 0 4 708 0 20 94 1 0 10 2 0 8 chain 142287 chr6 171115067 + 57173736 57176809 SVA_A 1864 - 2 1845 25761 188 1114 0 393 3 0 93 1 4 39 1 0 9 88 9 32 43 1 33 2 0 75 3 0 39 4 1 59 1 0 124 0 2 62 3 0 52 37 0 25 0 34 8 0 2 37 12 13 386 0 16 107 chain 66772 chr6 171115067 + 57173937 57174686 L1PA2 6032 - 0 724 49746 378 25 0 346 chain 32473 chr6 171115067 + 57174686 57175038 L1PA2 6032 + 4963 5315 80073 352 chain 2293 chr6 171115067 + 57175582 57175608 SVA_A 1864 - 879 905 235445 26 chain 2283 chr6 171115067 + 57175617 57175658 SVA_A 1864 - 840 881 80725 41 chain 2445 chr6 171115067 + 57176197 57176234 SVA_A 1864 - 1106 1143 58128 37 chain 28033 chr6 171115067 + 57187154 57187524 THE1C 375 + 2 372 92880 123 11 14 180 7 5 25 1 0 23 chain 3693 chr6 171115067 + 57188369 57188411 L1PA8 5853 + 5637 5679 212026 42 chain 3922 chr6 171115067 + 57188412 57188474 L1PA8 5853 + 5679 5740 208526 14 2 0 5 1 2 40 chain 8669 chr6 171115067 + 57188476 57188579 L1PA8 5853 + 5741 5853 167364 22 0 9 81 chain 16344 chr6 171115067 + 57194246 57194563 THE1C 375 + 0 336 137359 122 17 21 34 1 3 6 0 1 6 42 52 36 18 20 35 chain 540448 chr6 171115067 + 57199666 57205660 L1PA3long 6157 + 19 6153 2746 133 0 1 623 0 128 90 0 3 2080 4 7 795 0 4 1413 5 6 851 chain 27643 chr6 171115067 + 57239101 57239389 AluYg6 310 - 22 310 94231 288 chain 56736 chr6 171115067 + 57239683 57240377 L1PA11 4918 - 1555 2247 54694 643 2 0 49 chain 5788 chr6 171115067 + 57249255 57249326 MLT1C 463 - 360 431 187278 71 chain 8979 chr6 171115067 + 57256135 57257169 L1PA14 3548 - 94 1107 44001 39 1 0 19 9 20 34 5 1 111 2 3 6 1 0 33 0 1 50 1 0 6 2 0 17 4 0 87 1 2 18 10 7 47 2 0 13 2 0 23 12 0 45 12 11 85 1 2 86 1 0 86 4 5 23 0 2 34 15 14 70 4 0 13 chain 379498 chr6 171115067 + 57257510 57262514 L1PB1 5432 - 22 5019 10770 6 1 0 13 1 0 21 1 0 9 1 0 15 2 0 6 5 0 6 6 7 10 7 31 5 1 0 19 1 2 23 1 0 13 7 6 43 33 32 5 1 0 22 5 0 13 17 0 129 0 1 18 0 3 23 5 1 124 0 2 174 7 0 8 1 0 547 0 1 116 1 0 38 0 1 189 2 0 238 0 4 280 1 0 96 0 1 233 0 1 39 1 0 344 3 0 86 0 1 157 0 8 378 11 16 240 4 5 198 8 0 727 1 0 73 1 2 85 5 6 28 0 3 66 chain 79354 chr6 171115067 + 57263847 57264758 L1PA5 6144 - 7 916 43883 843 2 0 66 chain 4212 chr6 171115067 + 57264759 57265244 L1PA14 3548 - 2979 3451 44001 32 15 7 57 0 1 173 2 0 31 2 0 19 0 1 10 23 21 81 7 6 33 chain 20711 chr6 171115067 + 57272931 57273237 LTR9B 643 - 0 306 124925 168 1 0 21 32 33 84 chain 5675 chr6 171115067 + 57278235 57278303 HSMAR1 1287 - 1219 1287 188341 68 chain 18189 chr6 171115067 + 57298039 57298239 L1PA3long 6157 - 0 200 132363 200 chain 538845 chr6 171115067 + 57316578 57322730 L1PA4 6152 - 11 6140 3017 10 0 1 505 28 0 1631 0 3 2217 1 0 702 0 1 714 0 1 344 chain 207209 chr6 171115067 + 57330658 57333406 L1PA7 6471 - 1 2517 18703 766 0 1 27 0 4 59 0 3 145 241 0 42 0 3 22 3 0 48 0 1 400 1 0 195 1 0 76 0 4 107 3 0 238 0 1 374 chain 3739 chr6 171115067 + 57351060 57351103 MER85 139 + 0 43 211341 43 chain 76247 chr6 171115067 + 57383854 57384874 MER11C 1089 - 20 1061 45334 4 0 1 144 1 0 54 0 1 127 0 1 38 7 9 91 41 42 160 12 11 65 0 4 45 1 5 12 0 9 218 chain 36723 chr6 171115067 + 57416319 57417237 L1PREC2 3366 + 2445 3233 73924 17 3 0 254 0 1 89 1 0 44 1 0 3 3 0 14 27 21 13 14 9 10 15 17 14 37 20 32 9 7 38 168 93 14 56 41 19 10 5 13 chain 533675 chr6 171115067 + 57423097 57429119 L1PA3long 6157 - 5 6157 3743 844 0 4 1615 1 0 543 0 1 123 8 1 1355 0 1 60 1 0 667 1 5 29 9 137 600 14 15 152 chain 54814 chr6 171115067 + 57448773 57450095 L1PA3long 6157 - 2 615 55828 335 709 0 278 chain 26396 chr6 171115067 + 57449180 57449495 L1PA3long 6157 - 15 333 98428 234 0 3 81 chain 28274 chr6 171115067 + 57449503 57449803 AluYf4 310 - 10 310 92025 300 chain 64378 chr6 171115067 + 57478159 57478855 L1PA2 6032 + 5338 6032 50853 681 2 0 13 chain 4600 chr6 171115067 + 57480757 57480834 MER1B 344 + 42 130 199630 15 0 10 14 11 12 37 chain 18873 chr6 171115067 + 57480848 57481142 MER1B 344 + 30 335 130442 27 0 10 14 11 12 124 7 0 44 18 25 49 chain 460878 chr6 171115067 + 57503617 57509249 L1PA7 6471 + 821 6459 8366 134 0 4 593 1 0 49 0 3 274 0 2 679 0 1 72 16 0 70 0 4 183 0 4 356 0 1 287 0 3 7 0 1 265 0 4 12 1 0 218 2 1 280 2 1 305 0 1 36 0 4 274 1 0 70 24 11 587 1 4 79 0 2 259 0 1 254 0 1 90 4 1 106 7 11 34 chain 48227 chr6 171115067 + 57520214 57520774 L1PA6 6164 + 5597 6157 60294 560 chain 26202 chr6 171115067 + 57529372 57529713 MLT2A1 477 + 0 357 99192 44 5 17 81 0 1 26 1 5 149 1 0 34 chain 160416 chr6 171115067 + 57530687 57532721 HERVL-int 5654 + 3592 5654 23285 144 4 9 1150 0 3 38 0 8 360 57 60 26 0 1 32 0 6 135 5 6 28 0 1 55 chain 26620 chr6 171115067 + 57532723 57533076 MLT2A1 477 + 2 357 97599 140 0 1 20 6 10 48 3 1 101 1 0 34 chain 486206 chr6 171115067 + 57546454 57552754 L1PA7 6471 + 5 6470 7511 188 67 66 70 24 194 198 5 15 499 0 4 11 10 7 157 1 4 137 1 0 204 1 0 35 4 5 102 3 0 241 0 1 47 4 5 437 28 9 60 13 4 477 0 2 383 0 4 35 1 0 64 0 1 165 1 0 138 0 1 606 0 3 50 1 0 174 0 2 455 6 0 6 1 7 149 13 0 69 0 1 36 0 1 87 0 3 43 7 14 394 1 4 378 0 1 8 1 0 4 chain 522868 chr6 171115067 + 57567596 57573711 L1PA4 6152 + 0 6152 4881 120 13 28 270 0 3 6 4 1 442 3 5 80 0 4 76 1 0 389 0 1 2555 0 1 1413 0 10 236 2 0 193 0 1 169 0 1 137 0 5 6 chain 531057 chr6 171115067 + 57584254 57590258 L1PA3long 6157 - 10 6152 4074 308 0 1 4418 0 9 162 1 0 345 9 137 612 1 2 148 chain 527405 chr6 171115067 + 57597541 57603665 L1PA4 6152 - 0 6152 4456 512 2 0 238 0 10 168 0 1 588 1 0 957 1 3 508 1 0 1749 5 0 10 0 1 4 3 7 178 0 1 638 0 4 419 0 14 142 chain 13892 chr6 171115067 + 57619359 57619533 MER107 203 - 13 193 144951 11 0 6 163 chain 239581 chr6 171115067 + 57619683 57622733 L1PA7 6471 - 3 3033 16796 7 4 0 148 8 5 487 2 1 192 8 7 527 1 0 37 0 1 65 7 8 130 0 10 13 1 0 32 0 1 117 0 4 46 36 0 59 14 14 122 0 5 428 1 0 390 1 0 25 0 3 27 6 10 109 chain 88004 chr6 171115067 + 57622733 57623759 LTR5A 1029 + 0 1029 40368 111 0 3 915 chain 84676 chr6 171115067 + 57627702 57628722 LTR5A 1029 + 0 1029 41651 59 0 2 86 1 0 331 0 2 25 1 4 282 0 3 235 chain 7417 chr6 171115067 + 57645970 57646072 L1PA16 3655 + 3490 3589 174674 88 3 0 11 chain 33598 chr6 171115067 + 57656789 57657152 L1PA2 6032 - 0 363 78240 363 chain 27506 chr6 171115067 + 57660394 57660688 AluYa5 310 - 18 310 94634 199 2 0 93 chain 169763 chr6 171115067 + 57671451 57673306 L1PA3long 6157 - 5 1865 22079 1470 0 1 323 0 4 62 chain 53572 chr6 171115067 + 57693881 57694616 LTR17 781 + 0 769 56629 59 1 0 12 8 3 87 1 0 18 1 0 86 1 16 45 2 1 95 0 1 4 1 0 279 4 26 25 0 6 6 chain 22614 chr6 171115067 + 57698536 57698819 AluSc5 308 + 10 292 117514 45 0 1 154 10 8 74 chain 24627 chr6 171115067 + 57711571 57711872 AluYk4 311 - 12 311 106849 173 2 0 126 chain 21057 chr6 171115067 + 57726260 57726500 AluY 311 + 62 305 123700 69 0 2 18 0 1 153 chain 55261 chr6 171115067 + 57741869 57742493 L1PA5 6144 - 0 626 55544 283 0 2 341 chain 97506 chr6 171115067 + 57743085 57744289 L1PA7 6471 - 2 1211 37422 68 2 0 6 0 2 85 0 1 686 6 5 10 0 4 285 0 1 56 chain 296040 chr6 171115067 + 57771237 57774534 L1PA3long 6157 - 0 3303 13644 335 1 2 605 4 5 852 0 4 1500 chain 27856 chr6 171115067 + 57823094 57823390 AluYa5 310 - 8 310 93510 67 0 6 229 chain 221639 chr6 171115067 + 57828961 57831366 L1PA2 6032 + 3626 6031 17776 2405 chain 16573 chr6 171115067 + 57831604 57831786 L1PA4 6152 + 5953 6135 136726 182 chain 5206 chr6 171115067 + 57839045 57839130 MER51A 677 - 418 501 192972 25 0 8 27 10 0 23 chain 9674 chr6 171115067 + 57844745 57844939 Tigger1 2417 + 2202 2383 162226 10 14 0 40 2 0 55 1 2 25 23 26 4 1 0 19 chain 7168 chr6 171115067 + 57848206 57848449 AluJo 314 + 13 255 176276 25 141 0 15 0 140 62 chain 188460 chr6 171115067 + 57851328 57853642 L1PA8 5853 - 0 2310 20197 93 1 0 19 7 6 47 3 1 8 4 1 70 2 0 44 1 0 90 3 1 374 0 3 50 0 2 986 7 11 40 3 2 462 chain 112274 chr6 171115067 + 57853649 57855019 L1PA8 5853 + 2133 3516 33595 348 0 4 236 1 0 120 0 5 46 4 0 360 1 10 254 chain 56921 chr6 171115067 + 57869101 57869802 L1PA10 4194 + 3448 4146 54580 33 0 1 600 1 0 24 0 1 4 1 0 5 3 0 30 chain 12222 chr6 171115067 + 57874868 57875035 L1MA3 4352 - 687 854 151329 122 5 0 9 0 5 31 chain 60779 chr6 171115067 + 57877964 57878999 MER11B 1079 + 0 1079 52433 101 9 11 246 0 5 94 18 17 22 19 48 118 154 164 46 4 5 9 4 3 160 18 17 13 chain 30075 chr6 171115067 + 57888734 57889065 L1PA5 6144 - 283 614 84580 331 chain 24219 chr6 171115067 + 57889079 57889350 L1PA5 6144 + 5871 6142 109102 271 chain 116594 chr6 171115067 + 57912075 57913422 SVA_B 1603 + 49 1597 32263 504 1 2 124 0 1 138 0 40 66 0 159 514 chain 10185 chr6 171115067 + 57923637 57923748 THE1A-int 1579 - 1452 1563 159697 111 chain 235206 chr6 171115067 + 57933289 57935960 L1PA4 6152 + 3461 6140 17017 220 2 1 182 4 7 415 0 2 326 0 1 20 1 0 669 0 4 832 chain 531976 chr6 171115067 + 57948700 57954821 L1PA4 6152 - 6 6146 3962 1397 0 3 2149 1 20 255 1 0 1743 1 0 445 1 0 128 chain 105502 chr6 171115067 + 57989124 57990376 L1PA4 6152 - 0 1247 35373 27 12 13 14 12 7 193 1 0 993 chain 14366 chr6 171115067 + 57990404 57990571 L1P1 4361 + 4003 4169 143323 148 1 0 18 chain 249832 chr6 171115067 + 57993758 57996624 L1PA4 6152 + 3268 6143 16267 30 0 1 402 1 2 348 0 1 1252 0 5 729 0 1 104 chain 537332 chr6 171115067 + 58015152 58021297 L1PA3long 6157 - 0 6151 3270 326 7 8 3503 0 1 15 0 1 967 6 5 90 0 2 478 0 2 753 chain 57723 chr6 171115067 + 58049556 58050233 L1PA5 6144 - 3 684 54122 138 0 4 539 chain 395845 chr6 171115067 + 58061096 58065576 L1PA3long 6157 + 1671 6157 10248 1621 0 1 1677 0 1 852 0 1 72 0 1 117 0 1 65 0 1 76 chain 16457 chr6 171115067 + 58072133 58072346 MSTA-int 1630 - 1372 1586 137047 96 11 12 106 chain 164587 chr6 171115067 + 58075494 58077456 L1P1 4361 + 15 1979 22730 373 3 0 645 0 1 693 0 4 248 chain 20294 chr6 171115067 + 58081209 58081451 L1PA3long 6157 - 0 245 126245 5 1 0 139 1 5 96 chain 3607 chr6 171115067 + 58149253 58149292 tRNA-Ile-ATT 40 + 0 39 213533 39 chain 5641 chr6 171115067 + 58156449 58156515 tRNA-Ala-GCY 73 - 0 66 188651 66 chain 6528 chr6 171115067 + 58164627 58164700 tRNA-Ala-GCY 73 - 0 73 181033 73 chain 4859 chr6 171115067 + 58171932 58171989 tRNA-Ala-GCY 73 - 13 70 196688 57 chain 6650 chr6 171115067 + 58182678 58182751 tRNA-Ala-GCY 73 - 0 73 180096 73 chain 6314 chr6 171115067 + 58187443 58187516 tRNA-Ala-GCY 73 - 0 73 182685 73 chain 6528 chr6 171115067 + 58196622 58196695 tRNA-Ala-GCY 73 - 0 73 181032 73 chain 25419 chr6 171115067 + 58202108 58202469 THE1C 375 + 0 363 102596 108 1 0 16 0 20 10 17 1 195 1 0 13 chain 5983 chr6 171115067 + 58205499 58205572 L1MA7 2200 + 1871 1944 185402 73 chain 11398 chr6 171115067 + 58207691 58207910 L1MA5A 2387 + 2107 2295 154707 48 2 0 26 2 0 34 3 0 12 31 4 36 4 7 21 chain 82469 chr6 171115067 + 58210795 58211755 L1PA6 6164 - 1694 2653 42558 264 0 1 220 1 0 79 0 2 213 4 1 179 chain 129852 chr6 171115067 + 58211760 58213328 L1PA6 6164 + 4616 6162 28122 97 23 1 865 0 1 252 1 0 98 0 2 222 2 0 8 chain 27191 chr6 171115067 + 58246356 58246659 L1PA2 6032 + 5729 6032 95621 303 chain 105232 chr6 171115067 + 58261013 58262548 THE1B-int 1605 + 13 1599 35444 246 0 1 14 0 6 19 70 9 83 5 69 76 9 16 109 15 16 17 8 14 119 11 12 117 6 1 193 0 14 78 0 6 56 0 5 90 6 7 113 0 5 75 chain 10792 chr6 171115067 + 58262555 58262745 THE1B 368 + 2 199 157026 47 0 6 13 17 18 19 11 12 52 1 0 30 chain 4435 chr6 171115067 + 58268419 58268493 MER3 215 + 8 83 201513 14 9 10 51 chain 40283 chr6 171115067 + 58275550 58276106 MLT2A2 560 - 0 560 68899 68 1 2 65 8 19 16 0 1 93 12 0 98 1 4 194 chain 56490 chr6 171115067 + 58300863 58301600 LTR17 781 + 0 755 54857 56 1 0 105 1 0 18 1 0 148 1 0 377 3 25 26 chain 25974 chr6 171115067 + 58318654 58318955 AluYk4 311 - 12 311 100126 167 2 0 132 chain 18888 chr6 171115067 + 58333318 58333562 AluY 311 + 62 299 130398 70 6 7 140 8 0 20 chain 55860 chr6 171115067 + 58348936 58349561 L1PA5 6144 - 0 625 55207 625 chain 20888 chr6 171115067 + 58423948 58424699 L1P4a 3072 + 36 457 124137 11 1 0 19 3 1 53 1 0 89 48 52 15 1 0 27 379 51 99 1 0 4 chain 51510 chr6 171115067 + 58424699 58425253 L1PA3long 6157 - 599 1153 57960 554 chain 56590 chr6 171115067 + 58425253 58425877 L1PA3long 6157 + 5533 6157 54790 624 chain 23874 chr6 171115067 + 58428841 58429144 AluY 311 + 9 309 111062 124 18 13 92 0 1 42 0 1 27 chain 37052 chr6 171115067 + 58443716 58444238 MER51A 677 - 0 675 73453 62 1 0 28 7 0 160 1 168 25 0 8 27 10 0 23 7 3 171 chain 10471 chr6 171115067 + 58449658 58449853 Tigger1 2417 + 2202 2383 158384 11 14 0 40 2 0 81 23 26 4 1 0 19 chain 184160 chr6 171115067 + 58456250 58458558 L1PA8 5853 - 0 2310 20575 93 1 0 19 7 6 37 6 5 14 2 1 70 2 0 46 1 0 88 3 1 368 0 3 56 0 2 35 1 0 48 3 0 13 0 4 7 4 0 527 0 3 72 0 1 271 12 16 41 2 1 10 0 3 449 chain 110839 chr6 171115067 + 58458565 58459931 L1PA8 5853 + 2133 3513 33992 335 0 1 12 0 4 236 1 0 124 0 5 42 4 0 361 0 9 251 chain 30197 chr6 171115067 + 58492408 58492739 L1PA5 6144 - 283 614 84199 331 chain 25575 chr6 171115067 + 58492739 58493024 L1PA5 6144 + 5857 6142 101844 285 chain 113815 chr6 171115067 + 58516353 58517729 SVA_B 1603 + 64 1603 33144 158 1 0 556 1 2 5 1 0 131 10 169 89 0 2 29 1 6 386 2 0 6 chain 10393 chr6 171115067 + 58527934 58528059 THE1A-int 1579 - 1452 1577 158731 125 chain 237504 chr6 171115067 + 58537559 58540234 L1PA4 6152 + 3461 6140 16908 403 4 7 741 0 1 1527 chain 533109 chr6 171115067 + 58552901 58559025 L1PA4 6152 - 24 6146 3833 605 6 6 477 0 1 291 0 3 5 0 1 1378 0 1 817 2 1 229 1 0 1062 8 7 479 0 4 185 1 0 233 9 1 336 chain 130630 chr6 171115067 + 58583367 58584872 SVA_C 1631 + 0 1630 27937 21 1 0 625 8 45 152 0 88 73 0 1 625 chain 307862 chr6 171115067 + 58602205 58605708 L1PA4 6152 + 2637 6148 13095 1046 2 0 952 3 1 694 0 12 806 chain 67890 chr6 171115067 + 58605716 58606503 L1PA4 6152 + 5350 6136 49294 644 13 12 130 chain 8201 chr6 171115067 + 58622866 58622954 L1PA3long 6157 - 15 103 169950 88 chain 172788 chr6 171115067 + 58637608 58639541 L1PA3long 6157 - 1579 3510 21735 290 3 0 1271 0 1 369 chain 140994 chr6 171115067 + 58639551 58641131 L1PA3long 6157 + 4577 6156 25988 638 1 0 941 chain 29272 chr6 171115067 + 58641151 58641536 L1PA6 6164 + 5782 6162 87684 208 1 3 9 10 9 144 6 0 7 chain 507987 chr6 171115067 + 58642454 58648817 L1PA7 6471 + 0 6447 6322 65 0 1 922 16 15 23 12 11 125 3 46 28 0 4 360 0 1 208 0 1 68 0 2 35 0 1 364 0 13 8 5 8 332 1 0 38 0 1 10 0 1 92 0 1 233 0 3 74 0 2 47 0 1 175 1 0 183 0 1 275 0 1 890 1 9 553 4 7 381 1 2 189 3 0 13 0 2 364 2 1 107 0 1 4 9 6 139 chain 20073 chr6 171115067 + 58663192 58663432 L1PA3long 6157 + 5912 6152 126906 240 chain 165045 chr6 171115067 + 58667188 58669158 L1P1 4361 - 2382 4346 22646 248 0 4 698 0 1 564 11 0 449 chain 16625 chr6 171115067 + 58673273 58673486 MSTA-int 1630 + 44 258 136600 106 11 12 96 chain 58101 chr6 171115067 + 58690926 58691604 L1PA5 6144 + 5460 6142 53923 539 0 4 139 chain 29808 chr6 171115067 + 58706851 58707169 AluYb9 318 + 0 318 85411 318 chain 518692 chr6 171115067 + 58720085 58726213 L1PA4 6152 + 9 6143 5309 476 0 10 81 1 0 132 12 5 1880 0 1 4 14 13 49 2 0 524 0 1 506 0 2 247 0 1 722 18 19 1315 17 18 128 chain 11332 chr6 171115067 + 58727519 58727834 HERVK11-int 2540 + 678 939 154954 59 5 0 14 128 83 44 3 0 12 2 1 48 chain 93886 chr6 171115067 + 58734266 58735355 L1PA3long 6157 - 2 1088 38390 58 0 2 84 8 9 97 6 0 836 chain 368323 chr6 171115067 + 58739477 58744130 HERVK9-int 4720 - 0 4662 11146 15 1 0 5 5 6 179 6 7 110 1 2 64 15 14 211 18 9 23 1 0 83 0 1 628 0 1 826 0 3 32 0 12 668 0 1 836 0 1 340 0 1 479 9 8 23 1 0 8 1 0 38 0 1 27 chain 60351 chr6 171115067 + 58771851 58772538 L1PA3long 6157 + 4610 5297 52654 687 chain 33800 chr6 171115067 + 61931607 61931990 L1PA3long 6157 - 0 383 77939 383 chain 360074 chr6 171115067 + 61945312 61949951 HERVK9-int 4720 + 58 4720 11361 27 0 1 38 1 0 9 1 0 22 9 8 481 0 1 344 22 23 49 2 1 241 0 13 83 4 0 154 22 23 244 0 1 608 0 1 55 6 18 31 0 3 515 0 4 306 0 1 629 0 1 8 4 5 71 1 0 31 9 0 210 4 3 184 9 10 185 0 1 4 1 0 15 chain 96249 chr6 171115067 + 61954104 61955180 L1PA3long 6157 + 5082 6157 37749 933 1 0 142 chain 324707 chr6 171115067 + 61963216 61967094 L1PA4 6152 - 1 3896 12405 6 0 2 140 3 4 712 0 4 342 0 1 268 8 9 694 10 12 183 0 1 506 0 4 351 1 2 246 1 2 21 3 2 383 chain 3417 chr6 171115067 + 61972635 61972676 MER94 134 - 15 56 216807 41 chain 350339 chr6 171115067 + 61973634 61977774 L1PA4 6152 + 1994 6143 11593 95 9 5 95 0 1 4 5 4 120 1 0 41 0 1 279 1 0 55 0 5 817 3 1 170 2 0 2317 1 8 62 1 7 62 chain 60239 chr6 171115067 + 61986174 61986898 L1PA4 6152 - 9 735 52713 104 0 1 200 0 1 15 5 4 86 0 1 314 chain 14878 chr6 171115067 + 61986900 61987095 L1PA4 6152 + 2390 2573 141689 176 12 0 7 chain 54816 chr6 171115067 + 61987102 61987747 L1PA4 6152 + 2594 3241 55825 131 0 1 106 0 2 331 1 0 76 chain 181608 chr6 171115067 + 61987747 61989892 L1PA4 6152 + 3251 5394 20833 271 4 0 94 1 0 64 3 0 602 3 0 160 0 1 304 5 11 132 0 2 502 chain 72393 chr6 171115067 + 61989892 61990941 L1PA11 4918 - 780 1822 47185 71 1 0 224 4 5 69 25 22 9 0 1 27 22 23 14 9 9 122 2 1 6 0 1 103 1 2 18 8 1 314 chain 40036 chr6 171115067 + 61999334 62000000 L1MA1 4479 - 293 918 69266 14 6 0 13 5 2 6 1 0 9 1 0 38 3 0 24 3 2 126 3 0 5 1 0 88 3 0 6 0 2 6 51 37 52 1 0 17 2 0 25 1 0 108 4 1 44 chain 70663 chr6 171115067 + 62009625 62010480 L1PA7 6471 - 3 859 48080 5 2 0 149 7 0 543 0 10 149 chain 25711 chr6 171115067 + 62010503 62010799 L1PA3long 6157 - 0 298 101248 150 2 4 144 chain 12175 chr6 171115067 + 62011412 62011560 L1PA5 6144 - 9 161 151514 36 1 0 104 0 5 7 chain 19549 chr6 171115067 + 62018049 62018352 ERVL-int 1947 + 66 357 128521 33 10 4 13 2 0 147 7 6 17 3 0 71 chain 133352 chr6 171115067 + 62029870 62031353 L1PA2 6032 + 4548 6031 27357 144 0 1 563 1 0 775 chain 452089 chr6 171115067 + 62048093 62053830 L1PA7 6471 - 4 5760 8693 6 4 0 129 10 11 355 9 6 339 1 0 6 2 0 275 0 1 354 1 2 315 0 4 23 11 11 315 2 0 144 2 1 170 0 1 513 1 2 9 0 3 307 3 4 16 1 0 379 2 0 58 0 2 40 26 25 54 0 1 68 8 3 742 3 4 138 1 0 7 0 1 164 1 2 111 1 0 4 7 8 63 0 19 350 4 0 6 4 8 67 6 5 62 7 12 31 chain 29410 chr6 171115067 + 62053989 62054299 AluYa5 310 - 0 310 87018 310 chain 29319 chr6 171115067 + 62055370 62055686 AluYb8 318 - 4 318 87448 188 2 0 126 chain 289739 chr6 171115067 + 62071235 62077884 L1PA3long 6157 + 2643 6151 14038 2044 0 1 275 1 0 341 0 4 65 3221 76 702 chain 259511 chr6 171115067 + 62073965 62077165 L1P1 4361 + 1 3169 15730 52 6 5 242 13 14 260 1 0 255 52 1 92 6 7 301 0 1 982 0 18 938 chain 8210 chr6 171115067 + 62083697 62083785 L1PA3long 6157 - 15 103 169899 88 chain 172716 chr6 171115067 + 62098470 62100398 L1PA3long 6157 - 1579 3513 21741 220 0 4 485 0 2 696 1 0 25 0 1 501 chain 138689 chr6 171115067 + 62100398 62101971 L1PA3long 6157 + 4580 6156 26315 888 5 6 399 0 2 281 chain 29156 chr6 171115067 + 62102007 62102390 L1PA6 6164 + 5782 6162 88279 207 2 4 9 3 2 152 4 0 6 chain 506312 chr6 171115067 + 62103289 62109675 L1PA7 6471 + 0 6470 6445 65 0 1 922 6 5 33 12 11 127 1 44 555 0 1 4 1 0 41 0 1 66 0 2 37 0 1 358 19 35 332 1 0 38 0 1 10 0 1 92 0 1 311 3 5 43 0 1 175 1 0 183 0 1 524 0 1 640 1 13 274 1 0 16 6 7 253 4 7 304 1 0 4 1 3 70 1 2 192 3 0 10 0 2 364 2 1 106 22 23 151 chain 24713 chr6 171115067 + 62115120 62115541 MSTA 426 + 13 426 106366 85 8 30 5 1 0 79 78 50 48 1 0 116 chain 20052 chr6 171115067 + 62124008 62124244 L1PA3long 6157 + 5912 6152 126971 96 2 6 138 chain 50537 chr6 171115067 + 62128002 62128589 L1P2 5180 - 3189 3780 58622 248 0 4 339 chain 62022 chr6 171115067 + 62186033 62186738 L1PA4 6152 + 5297 6003 51889 92 0 1 613 chain 12856 chr6 171115067 + 62186738 62186880 L1PA4 6152 + 6004 6146 148812 142 chain 52980 chr6 171115067 + 62207123 62207808 HERVK9-int 4720 - 0 688 57029 77 1 2 141 0 1 101 1 2 364 chain 398135 chr6 171115067 + 62230644 62235300 L1PA4 6152 + 1455 6150 10169 181 6 22 131 9 28 350 0 1 93 4 1 57 0 1 788 0 1 261 7 1 691 0 1 223 0 2 345 1 2 647 0 4 98 0 1 580 0 1 184 chain 13452 chr6 171115067 + 62239191 62239423 L1PA13 3608 + 3224 3447 146525 37 0 1 11 2 0 31 2 1 29 1 0 21 2 1 12 1 2 21 2 0 5 2 0 45 2 0 6 chain 501204 chr6 171115067 + 62241400 62247802 L1PA7 6471 + 0 6457 6773 196 1 2 27 0 10 3 10 0 168 1 2 65 2 0 10 0 1 130 0 1 600 0 4 48 0 1 504 0 4 101 0 1 574 14 7 105 3 4 63 15 15 416 4 3 35 0 4 445 0 4 53 0 1 11 0 1 217 8 6 175 0 1 138 7 10 39 1 2 62 0 1 48 0 21 134 1 0 107 0 1 85 3 0 121 0 7 24 0 4 133 1 0 665 0 4 94 0 3 407 10 11 318 chain 34553 chr6 171115067 + 62254596 62254987 L1PA4 6152 + 5752 6143 76825 391 chain 4582 chr6 171115067 + 62258289 62258372 MER5A1 166 - 24 112 199845 38 0 1 5 13 17 27 chain 60286 chr6 171115067 + 62284830 62285645 L1PB2 3958 + 3027 3838 52689 52 9 14 214 2 0 56 1 0 11 5 0 65 2 0 12 4 0 40 0 8 46 1 0 72 1 0 62 1 0 65 0 1 30 1 0 63 chain 2915 chr6 171115067 + 62288104 62288137 MADE1 96 - 63 96 226781 33 chain 4605 chr6 171115067 + 62290177 62290671 LTR12_ 688 + 94 655 199574 44 348 385 17 55 85 30 chain 28394 chr6 171115067 + 62298705 62299140 L1PA8 5853 + 5428 5848 91605 92 1 2 42 1 0 41 5 3 70 4 1 9 1 0 7 7 0 45 23 21 87 chain 215387 chr6 171115067 + 62311146 62313891 HERVH-int 3825 + 528 3823 18141 30 0 208 12 1 0 451 15 0 202 9 0 596 57 16 8 0 41 568 0 3 311 5 367 69 7 8 207 4 5 193 chain 54817 chr6 171115067 + 62318364 62319002 L1PA7 6471 - 20 658 55824 638 chain 5190 chr6 171115067 + 62346447 62346533 MER20 218 + 22 106 193141 9 6 0 52 4 8 15 chain 92759 chr6 171115067 + 62346941 62347983 L1PA3long 6157 - 1 1044 38728 904 0 1 138 chain 49006 chr6 171115067 + 62347983 62348531 L1PA3long 6157 + 4567 5115 59149 548 chain 60489 chr6 171115067 + 62353153 62354182 L1PREC2 3366 + 2006 3006 52585 94 0 1 162 0 3 29 46 46 63 0 5 13 19 18 146 0 1 4 1 0 120 6 7 34 2 0 53 2 1 44 50 38 17 31 24 22 36 20 35 chain 159726 chr6 171115067 + 62371544 62373315 L1PA4 6152 + 4381 6151 23372 920 1 0 850 chain 130983 chr6 171115067 + 62381755 62383194 L1PA3long 6157 - 1 1442 27865 82 0 1 126 0 1 1231 chain 63941 chr6 171115067 + 62383196 62383891 L1PA3long 6157 + 4012 4707 51033 695 chain 227504 chr6 171115067 + 62429686 62432193 L1PA3long 6157 - 1 2510 17451 337 0 1 1728 0 1 442 chain 307837 chr6 171115067 + 62433489 62437826 L1PA11 4918 + 276 4629 13097 137 0 4 21 0 1 123 0 2 20 9 16 148 5 4 8 1 0 318 0 2 25 7 8 100 0 2 132 1 3 201 1 0 215 0 2 45 1 2 86 0 1 25 0 9 207 38 39 32 0 1 344 8 0 43 7 11 293 0 26 337 1 2 252 6 7 99 1 0 261 9 1 161 0 1 131 6 8 40 14 4 92 1 0 61 9 8 9 1 2 33 0 4 30 2 0 6 8 7 20 39 31 14 1 0 14 2 0 11 7 1 4 1 0 12 23 16 18 chain 40496 chr6 171115067 + 62453538 62453993 L1PA4 6152 - 1 458 68594 141 0 2 314 chain 40146 chr6 171115067 + 62455983 62456605 L1PA8 5853 - 0 545 69114 76 94 17 18 1 0 62 1 0 72 2 0 44 1 0 28 0 1 97 0 1 67 0 3 59 chain 526492 chr6 171115067 + 62479086 62487203 L1PA4 6152 + 6 6151 4547 352 18 0 102 6 0 120 1 0 2240 0 15 123 12 15 290 0 7 169 1980 0 75 0 2 668 0 1 120 1 0 358 1 2 71 0 1 567 0 4 63 0 1 4 1 0 775 chain 152290 chr6 171115067 + 62482548 62484254 L1PA3long 6157 - 0 1710 24303 7 0 1 771 1 0 93 1 0 812 0 5 21 chain 21217 chr6 171115067 + 62484259 62484497 L1PA3long 6157 + 4203 4441 123152 238 chain 5159 chr6 171115067 + 62487957 62488014 L1PREC2 3366 + 2182 2239 193463 57 chain 5356 chr6 171115067 + 62513486 62513550 THE1C-int 1605 - 984 1048 191480 64 chain 168657 chr6 171115067 + 62579471 62581757 L1P3 4156 + 0 2299 22202 64 2 3 47 1 6 123 0 1 7 9 8 61 2 1 81 17 0 8 9 6 53 4 0 102 3 0 37 24 14 48 7 9 26 1 2 223 6 24 171 0 1 123 13 32 348 0 1 362 0 3 304 chain 25197 chr6 171115067 + 62601193 62601478 L1PA4 6152 - 2357 2642 102399 285 chain 207740 chr6 171115067 + 62601478 62603814 L1PA4 6152 + 3811 6152 18659 1493 0 4 730 0 1 113 chain 15438 chr6 171115067 + 62624293 62624461 L1PA4 6152 + 5870 6038 140080 168 chain 9732 chr6 171115067 + 62624461 62624568 L1PA4 6152 + 6039 6146 161929 107 chain 7460 chr6 171115067 + 62641679 62641766 Tigger2 2703 + 2284 2371 174400 87 chain 90358 chr6 171115067 + 62666847 62667916 MER11C 1089 + 0 1073 39517 317 0 4 97 1 0 181 0 1 363 0 1 25 1 0 84 chain 123504 chr6 171115067 + 62713355 62714912 L1P1 4361 + 2414 3976 29879 102 0 1 4 0 3 7 5 2 288 7 20 355 4 1 23 0 4 193 12 5 249 3 0 305 chain 55196 chr6 171115067 + 62759654 62760345 L1PA7 6471 + 5769 6470 55584 329 3 0 214 2 11 131 0 4 12 chain 98130 chr6 171115067 + 62770848 62771929 L1HS 6032 - 3775 4856 37218 1081 chain 346219 chr6 171115067 + 62771929 62775701 L1PA2 6032 + 2261 6032 11722 2995 1 0 776 chain 229414 chr6 171115067 + 62780425 62783002 L1PA4 6152 - 180 2758 17327 511 0 1 76 1 0 1219 1 0 71 0 2 698 chain 160671 chr6 171115067 + 62797497 62799588 L1P3 4156 - 2092 4153 23239 625 4 1 85 1 0 379 20 0 60 0 1 23 4 5 471 16 5 89 1 0 58 31 35 224 chain 11595 chr6 171115067 + 62814198 62814326 L1PA2 6032 - 2 130 153911 128 chain 102017 chr6 171115067 + 62815293 62816429 L1PA3long 6157 - 2612 3747 36236 848 1 0 287 chain 230344 chr6 171115067 + 62816429 62819012 L1PA3long 6157 + 3560 6157 17290 124 0 16 1684 1 0 35 1 0 394 5 6 186 7 6 146 chain 2401 chr6 171115067 + 62819806 62819848 L1ME1 1623 + 718 753 234204 6 1 0 20 6 0 9 chain 49202 chr6 171115067 + 62832818 62833402 L1PA6 6164 - 10 596 59590 190 0 2 394 chain 18251 chr6 171115067 + 62844986 62845342 THE1B 368 + 0 368 132201 109 7 8 21 0 4 16 42 35 15 20 32 13 0 4 32 1 0 17 14 13 49 chain 3302 chr6 171115067 + 62879164 62879202 MER66C 541 - 119 157 218947 38 chain 314259 chr6 171115067 + 62907552 62911136 L1PA4 6152 + 2547 6138 12837 623 0 1 28 0 1 254 1 0 14 0 1 214 1 0 665 0 4 1037 0 1 599 0 1 148 chain 21119 chr6 171115067 + 62923536 62923807 AluY 311 + 39 311 123487 93 0 1 10 3 0 7 6 9 152 chain 97134 chr6 171115067 + 62932617 62933925 THE1A-int 1579 - 240 1552 37530 340 13 11 314 17 19 4 0 1 43 18 19 282 1 0 4 0 1 191 0 3 18 2 1 61 chain 42816 chr6 171115067 + 63019301 63020129 L1PB1 5432 + 4645 5413 65630 67 1 2 98 3 0 3 7 0 222 9 10 5 1 0 51 1 2 9 63 0 8 68 99 16 1 0 44 1 0 15 3 0 16 7 0 10 13 10 14 2 0 24 1 0 22 1 0 12 1 0 9 chain 6970 chr6 171115067 + 63021827 63021943 MLT1B 390 + 55 170 177685 64 19 18 33 chain 536461 chr6 171115067 + 63021945 63028100 L1PA4 6152 + 3 6151 3382 69 1 0 308 1 8 638 52 8 28 0 2 150 0 1 201 0 5 107 1 2 155 0 1 4 0 17 612 0 1 711 3 0 152 1 0 1705 1 0 394 1 0 819 2 11 39 chain 7684 chr6 171115067 + 63028289 63028390 MLT1B 390 + 289 390 173019 101 chain 103191 chr6 171115067 + 63040401 63041559 L1PA4 6152 - 16 1173 35953 1032 2 1 124 chain 26315 chr6 171115067 + 63047751 63048094 THE1B 368 - 0 354 98764 75 1 0 101 2 0 24 1 0 109 0 15 30 chain 49986 chr6 171115067 + 63057126 63057675 L1PA4 6152 + 5447 5997 59022 294 0 1 255 chain 12455 chr6 171115067 + 63057676 63057814 L1PA4 6152 + 6005 6143 150440 138 chain 64893 chr6 171115067 + 63079478 63080273 LTR12 884 + 0 884 50612 276 0 90 11 2 0 65 1 2 440 chain 255616 chr6 171115067 + 63092343 63095189 L1PA3long 6157 - 0 2845 15953 339 2 1 48 7 0 461 0 4 396 0 1 1390 0 2 203 chain 2243 chr6 171115067 + 63111285 63111310 L1PA4 6152 + 5867 5892 236045 25 chain 23042 chr6 171115067 + 63111311 63111570 L1PA4 6152 + 5892 6151 115434 259 chain 6901 chr6 171115067 + 63122264 63122345 L1PREC2 3366 + 763 844 178187 81 chain 238257 chr6 171115067 + 63126476 63129187 L1PA5 6144 + 3402 6132 16865 93 0 1 546 1 0 978 0 12 188 0 1 70 0 4 87 0 1 289 0 2 308 5 0 6 3 7 137 chain 147319 chr6 171115067 + 63133195 63135053 L1PA7 6471 + 4609 6469 24992 341 1 0 401 0 11 238 33 23 87 1 0 427 0 2 138 11 7 158 1 0 11 0 6 10 chain 16043 chr6 171115067 + 63160231 63160412 L1PA4 6152 - 0 180 138236 83 1 0 97 chain 3034 chr6 171115067 + 63162587 63162625 L1MC1 2226 - 37 74 224310 5 1 0 32 chain 63720 chr6 171115067 + 63166903 63167747 L1PA8 5853 - 0 841 51135 93 1 0 17 9 8 34 25 23 69 2 0 5 0 4 32 0 2 197 0 1 290 12 8 58 chain 11222 chr6 171115067 + 63177028 63177260 L1MA3 4352 - 81 287 155336 13 1 0 78 1 0 46 72 48 21 chain 512517 chr6 171115067 + 63201631 63208092 L1PA7 6471 + 3 6469 5919 332 0 2 361 10 9 595 0 4 72 0 1 382 0 1 296 9 8 76 2 1 43 0 6 440 12 0 257 0 4 604 1 0 26 3 0 26 0 4 69 0 1 25 0 12 175 2 0 257 1 2 270 0 1 327 6 5 132 0 1 73 8 9 10 0 1 32 7 5 617 0 2 20 2 0 8 5 7 10 18 7 211 4 3 291 4 3 330 chain 29921 chr6 171115067 + 63214573 63214884 AluYb8 318 + 0 311 85034 311 chain 144148 chr6 171115067 + 63242110 63243690 L1PA2 6032 - 2 1580 25455 10 2 0 1568 chain 40182 chr6 171115067 + 63257465 63257917 L1PA4 6152 + 5695 6152 69061 446 0 5 6 chain 97988 chr6 171115067 + 63260483 63261667 L1PA4 6152 - 1 2402 37281 115 4 0 135 16 1237 914 chain 13608 chr6 171115067 + 63263200 63263526 L1PA13 3608 + 3264 3548 145945 10 3 1 29 5 4 28 1 0 26 1 0 26 0 3 5 2 0 47 2 0 5 2 0 19 1 0 12 48 25 14 28 18 12 chain 415721 chr6 171115067 + 63264981 63269639 L1PA3long 6157 + 4 6156 9649 376 0 1492 955 0 1 3318 0 1 9 chain 12796 chr6 171115067 + 63282494 63282695 MER44A 345 + 113 314 149070 142 31 31 28 chain 93221 chr6 171115067 + 63287430 63288466 L1PA3long 6157 - 5 1041 38592 1036 chain 17823 chr6 171115067 + 63288466 63288660 L1PA3long 6157 + 4914 5108 133330 194 chain 28913 chr6 171115067 + 63295345 63295713 L1PA5 6144 - 6 375 89400 134 10 10 182 1 2 41 chain 140026 chr6 171115067 + 63296287 63298124 HERVH-int 3825 + 0 1840 26142 530 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 7 6 0 6 3 1 14 1 0 2 0 18 19 0 20 9 2 0 10 2 1 24 20 0 8 2 1 48 0 1 452 15 0 198 9 0 29 0 2 10 1 0 215 4 31 124 chain 55813 chr6 171115067 + 63305166 63305872 THE1A-int 1579 + 862 1579 55240 281 17 28 408 chain 16875 chr6 171115067 + 63324970 63325302 THE1B 368 + 0 356 135904 44 25 40 19 6 7 62 13 11 15 35 45 113 chain 49123 chr6 171115067 + 63359070 63359694 HERVL-int 5654 + 5026 5654 59657 252 0 1 69 0 2 69 13 14 221 chain 6430 chr6 171115067 + 63393087 63393167 MADE1 96 + 0 96 181774 49 0 16 31 chain 124862 chr6 171115067 + 63398685 63400124 L1PA5 6144 + 4707 6144 29435 343 1 0 106 0 1 559 0 2 92 1 2 176 3 0 144 3 1 11 chain 51274 chr6 171115067 + 63405081 63405654 L1PA4 6152 - 9 582 58136 573 chain 131476 chr6 171115067 + 63405655 63407138 L1PA4 6152 + 4061 5541 27758 711 3 0 769 chain 11899 chr6 171115067 + 63418577 63418748 L1M1 2793 - 1694 1940 152604 47 0 78 73 14 11 37 chain 6251 chr6 171115067 + 63422553 63422630 L1PB4 2604 + 2475 2552 183162 77 chain 110434 chr6 171115067 + 63448153 63449532 L1PA7 6471 - 5 1379 34087 149 1 0 273 0 2 179 21 8 145 2 0 5 1 5 79 2 1 369 5 11 148 chain 58805 chr6 171115067 + 63474528 63475316 MER4E1 777 - 7 777 53524 188 0 1 30 44 17 77 0 1 187 0 2 16 1 0 44 0 5 184 0 1 17 chain 30111 chr6 171115067 + 63476095 63476573 LTR2B 499 + 5 499 84451 7 0 1 56 4 0 41 69 88 106 4 5 8 1 0 182 chain 237795 chr6 171115067 + 63501932 63504957 HERVH-int 3825 + 0 3120 16893 279 18 21 33 1 0 32 14 15 71 22 0 6 4 28 45 1 0 40 1 0 10 1 0 20 1 31 12 0 120 17 59 0 554 0 2 1463 1 0 84 1 2 235 chain 10074 chr6 171115067 + 63519213 63519322 L1PA2 6032 + 5922 6031 160198 109 chain 178352 chr6 171115067 + 63525589 63527709 L1PA6 6164 - 2 2142 21131 612 1 2 233 1 0 15 0 4 208 0 6 126 0 1 268 5 15 29 1 0 621 chain 75501 chr6 171115067 + 63527709 63528818 L1P2 5180 - 4046 5178 45577 47 0 3 126 0 25 141 1 0 5 1 0 253 28 26 167 81 82 12 1 0 96 2 1 148 chain 13624 chr6 171115067 + 63536016 63536535 L1PA6 6164 + 4101 4621 28098 110 8 9 401 chain 278531 chr6 171115067 + 63536600 63539765 L1PA4 6152 - 6 3176 14719 837 0 3 83 0 1 203 0 1 129 0 1 4 5 4 251 1 0 521 6 8 160 2 1 963 chain 31526 chr6 171115067 + 63539765 63540966 L1PA6 6164 + 4627 5838 28098 22 1 0 150 0 1 40 0 8 466 0 1 285 0 1 237 chain 37657 chr6 171115067 + 63559228 63559719 LTR22 571 - 15 571 72605 32 0 1 83 1 0 166 3 69 129 1 0 76 chain 20716 chr6 171115067 + 63602875 63603246 THE1D 372 - 0 372 124913 33 1 0 145 81 83 77 8 9 4 1 0 21 chain 8134 chr6 171115067 + 63623419 63623515 THE1C 375 - 279 375 170311 96 chain 68758 chr6 171115067 + 63638444 63639228 L1PA4 6152 + 5368 6152 48917 784 chain 364916 chr6 171115067 + 63658362 63662468 L1PA4 6152 + 2044 6152 11230 276 1 0 871 0 1 697 0 1 50 0 1 2211 chain 27265 chr6 171115067 + 63676088 63676377 AluYa5 310 - 21 310 95385 289 chain 41447 chr6 171115067 + 63687957 63688490 L1PA8 5853 - 0 529 67352 93 1 0 19 2 1 47 0 1 13 2 1 38 0 1 31 2 0 46 6 5 233 chain 3371 chr6 171115067 + 63693033 63693070 MADE1 96 - 59 96 217648 37 chain 109526 chr6 171115067 + 63694118 63695473 L1PA7 6471 - 7 1361 34266 97 0 3 5 9 4 34 1 0 215 5 7 478 1 0 262 5 6 243 chain 176274 chr6 171115067 + 63695473 63697772 L1PA7 6471 + 3031 6469 21333 78 0 2 126 0 5 83 0 1108 252 1 0 59 5 21 58 0 2 7 1 0 123 21 20 347 0 1 276 0 4 16 1 0 69 0 1 9 0 2 55 15 18 158 0 2 467 1 0 46 1 2 7 3 0 14 chain 11080 chr6 171115067 + 63699070 63699398 L1PB1 5432 - 28 308 155894 11 1 0 23 1 0 5 0 1 18 25 20 15 22 15 14 2 1 45 6 5 10 2 1 36 3 0 4 21 0 11 2 0 10 5 1 10 12 10 14 chain 47130 chr6 171115067 + 63707543 63708148 PABL_A 660 - 8 625 61102 209 11 5 134 4 11 32 0 1 58 0 1 108 0 9 49 chain 37481 chr6 171115067 + 63709037 63709541 LTR10D 510 - 5 510 72841 86 2 0 176 10 12 132 1 0 4 2 1 15 0 1 4 2 4 70 chain 70632 chr6 171115067 + 63711221 63712029 L1PA3long 6157 - 0 799 48061 148 4 5 504 10 0 142 chain 133877 chr6 171115067 + 63712029 63713551 L1PA3long 6157 + 3813 5338 27247 83 0 2 265 1 2 1173 chain 245418 chr6 171115067 + 63715790 63719116 HERVH-int 3825 + 0 3825 16487 11 0 2 320 1 0 31 15 16 30 11 10 23 80 43 29 52 255 8 1 0 458 20 5 190 9 0 348 0 1 85 1 2 66 0 15 6 0 1 897 24 0 122 5 367 408 0 1 75 chain 24508 chr6 171115067 + 63722336 63722698 MER4A1 472 - 112 472 107504 72 54 53 74 1 0 161 chain 333069 chr6 171115067 + 63749437 63753549 L1PA7 6471 - 1 4133 12086 9 2 0 496 5 6 54 0 1 127 0 1 76 0 2 4 0 1 73 4 10 861 0 1 833 0 1 423 2 0 5 1 2 274 0 2 416 1 2 149 28 9 46 9 33 208 0 1 6 chain 10800 chr6 171115067 + 63757989 63758110 L1PA4 6152 + 6030 6151 156987 121 chain 16380 chr6 171115067 + 63758598 63758876 L1PA16 3655 - 70 349 137255 8 3 0 36 50 55 96 1 0 84 chain 456020 chr6 171115067 + 63762883 63768120 L1PA3long 6157 + 49 6147 8543 99 0 12 566 0 4 198 2 7 254 0 3 40 2 1 173 0 835 528 0 1 1062 0 1 31 0 1 31 0 2 2116 6 7 58 7 4 64 chain 47406 chr6 171115067 + 63776767 63777639 L1PB1 5432 - 2 786 60897 6 1 0 4 1 0 16 1 0 13 1 0 21 1 0 20 2 0 18 8 5 19 19 8 4 1 0 16 1 0 42 2 1 16 11 1 53 2 0 9 16 11 33 47 11 32 4 0 253 19 16 31 17 12 45 0 1 67 chain 485856 chr6 171115067 + 63780189 63786328 L1PA6 6164 - 4 6164 7528 142 16 16 517 8 7 163 1 0 165 5 6 115 1 3 87 0 1 641 0 9 274 1 3 56 1 4 97 3 4 146 11 12 378 0 1 96 1 0 370 0 2 438 2 0 81 0 1 42 0 1 433 0 1 293 0 1 645 11 2 54 0 2 284 1 0 24 5 6 18 0 2 188 13 14 40 24 26 53 10 11 185 chain 33469 chr6 171115067 + 63787406 63787860 LTR12F 595 - 0 595 78460 244 0 64 15 0 24 33 4 46 19 6 4 34 0 12 74 0 1 25 chain 453094 chr6 171115067 + 63790469 63796177 HERV9-int 5642 - 5 5637 8648 12 9 3 19 28 5 13 1 0 16 2 0 44 1 0 27 3 1 36 8 6 225 1 0 62 1 0 1944 1 3 22 0 1 168 1 0 275 1 14 8 13 0 69 7 8 79 0 1 243 24 26 770 0 1 103 0 1 28 0 1 111 7 9 172 15 9 254 2 0 53 1 0 48 29 1 32 6 0 113 8 3 593 chain 27979 chr6 171115067 + 63796202 63796650 LTR12F 595 - 0 595 93076 179 4 6 59 0 64 27 64 2 16 1 0 14 1 144 58 0 1 25 chain 8209 chr6 171115067 + 63809699 63809801 MER41B 635 + 511 613 169906 102 chain 23755 chr6 171115067 + 63812402 63812674 L1PA4 6152 - 9 281 111744 272 chain 53537 chr6 171115067 + 63816492 63817176 L1PA8 5853 - 0 679 56656 93 1 0 18 1 0 41 16 17 6 1 0 70 2 0 44 1 0 390 chain 19218 chr6 171115067 + 63831510 63831722 L1PA3long 6157 + 5597 5809 129479 212 chain 31503 chr6 171115067 + 63831725 63832073 L1PA3long 6157 + 5809 6157 81642 348 chain 10470 chr6 171115067 + 63837350 63837553 L1PB1 5432 - 8 189 158387 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 20 9 4 1 0 15 1 0 38 chain 29733 chr6 171115067 + 63842244 63842646 MLT2A1 477 - 81 477 85718 14 2 0 200 2 0 11 10 7 134 0 1 29 chain 441025 chr6 171115067 + 63842646 63848221 HERVL-int 5654 - 0 5626 9021 222 0 4 201 0 1 107 9 8 213 1 4 107 12 18 9 6 0 133 2 3 18 13 14 702 2 1 203 1 0 4 0 1 870 5 6 741 3 5 191 16 4 164 0 1 91 0 1 183 1 11 209 0 10 75 0 1 68 0 1 124 1 0 17 6 24 91 5 6 87 0 1 48 0 2 280 6 9 130 0 3 118 0 1 80 chain 16173 chr6 171115067 + 63856460 63856759 THE1D 372 + 47 349 137833 22 31 33 64 40 42 16 1 0 125 chain 67935 chr6 171115067 + 63856854 63857921 L1MA2 4263 + 2922 4028 49266 241 0 4 90 1 5 92 11 8 204 1 0 7 12 11 7 2 0 71 1 0 51 25 13 67 6 0 16 20 79 70 47 45 25 chain 5051 chr6 171115067 + 63867212 63867372 L1PB1 5432 + 5282 5422 194621 14 2 0 6 16 6 14 33 28 20 1 0 22 7 6 6 1 0 18 chain 139622 chr6 171115067 + 63873259 63875126 SVA_A 1864 + 6 1864 26198 10 2 1 78 0 1 405 0 40 36 0 2 74 40 0 19 18 15 72 66 28 90 2 0 9 1 0 40 1 41 94 2 0 84 1 0 100 2 0 29 8 5 548 2 3 34 chain 2134 chr6 171115067 + 63873864 63873900 SVA_A 1864 + 727 763 75552 36 chain 504509 chr6 171115067 + 63876894 63883026 L1PA6 6164 + 0 6161 6573 138 0 2 54 6 5 37 0 2 107 10 11 163 0 2 46 1 0 220 0 17 450 2 1 941 0 1 354 3 5 165 1 6 335 5 6 117 1 0 4 0 1 1459 6 2 255 5 6 406 0 1 507 1 2 333 chain 4321 chr6 171115067 + 63884254 63884300 MADE1 96 + 0 46 202947 46 chain 56629 chr6 171115067 + 63904821 63905694 L1PB 1623 - 48 894 54757 21 53 30 8 1 0 14 30 22 26 2 1 7 1 0 14 25 30 97 3 0 293 1 6 277 chain 113217 chr6 171115067 + 63916001 63917483 THE1A-int 1579 + 0 1579 33308 153 0 3 128 0 1 188 7 24 188 8 9 212 7 9 158 3 71 350 0 5 80 chain 348292 chr6 171115067 + 63941699 63945949 L1PA7 6471 - 3 4253 11656 159 1 2 175 3 4 317 1 3 107 6 8 74 1 0 510 2 0 69 1 16 16 11 0 58 0 1 81 0 1 233 1 0 148 0 3 525 0 1 126 0 3 331 1 0 11 3 2 49 0 1 68 0 2 528 0 1 127 0 1 34 0 1 27 26 7 420 chain 110913 chr6 171115067 + 63983878 63985398 LTR12C 1709 - 0 1709 33961 74 1 0 8 1 0 32 0 10 38 0 8 172 1 2 137 0 4 65 0 47 163 50 0 112 1 0 15 0 119 93 1 0 141 4 5 64 23 66 29 17 27 278 chain 3956 chr6 171115067 + 63984570 63984620 LTR12C 1709 - 553 600 126120 38 4 2 4 1 0 3 chain 5506 chr6 171115067 + 64027140 64027287 MIR 256 - 40 206 189974 41 64 83 42 chain 114943 chr6 171115067 + 64035502 64036922 LTR12C 1709 - 0 1709 32810 145 0 101 235 0 4 51 9 0 55 4 2 4 1 0 95 0 1 24 0 2 27 0 196 342 3 0 135 17 17 273 chain 397891 chr6 171115067 + 64037785 64042658 HERV9-int 5642 - 828 5642 10175 98 0 2 1307 0 18 137 0 3 672 0 1 528 0 7 471 1 0 198 71 71 194 84 0 186 9 5 88 6 5 5 0 1 26 1 0 791 chain 31984 chr6 171115067 + 64042757 64043151 LTR12C 1709 - 0 529 80885 59 0 131 285 6 10 44 chain 7473 chr6 171115067 + 64065363 64065575 MLT1C 463 - 15 229 174323 58 107 109 47 chain 427138 chr6 171115067 + 64066749 64071708 L1PA4 6152 - 12 6151 9369 328 1 0 285 0 1 896 0 1 541 1 0 4 0 1 949 2 1174 401 0 2 170 0 1 143 6 11 192 1 0 1039 chain 494271 chr6 171115067 + 64072150 64078006 L1PA5 6144 + 3 6144 7154 132 7 33 117 1 0 415 0 2 454 0 3 10 9 0 433 0 1 67 0 2 39 24 292 28 0 1 277 16 9 608 0 1 275 1 0 670 10 9 2263 chain 6018 chr6 171115067 + 64087853 64087932 Tigger1 2417 + 630 708 185073 47 1 0 31 chain 27215 chr6 171115067 + 64100479 64100792 AluYf4 310 + 0 308 95545 132 4 1 133 2 0 42 chain 33511 chr6 171115067 + 64102535 64104663 MER41B 635 + 0 635 78392 55 1603 106 37 1 2 57 11 0 60 0 11 48 7 5 76 19 23 28 0 1 126 chain 74640 chr6 171115067 + 64114712 64115540 L1PA3long 6157 - 0 828 46190 828 chain 312716 chr6 171115067 + 64115553 64149270 L1PA3long 6157 + 2114 6157 12904 1197 1 0 852 1 2 1088 29674 0 282 0 1 562 1 0 59 chain 23754 chr6 171115067 + 64129838 64130123 AluY 311 + 10 298 111747 75 0 3 210 chain 7908 chr6 171115067 + 64152562 64152661 LTR12C 1709 - 960 1059 171597 99 chain 9658 chr6 171115067 + 64181655 64181884 MLT1A 405 + 26 282 162309 56 4 5 40 1 0 22 78 104 4 0 1 24 chain 18877 chr6 171115067 + 64190524 64190845 L1PB3 3668 + 3172 3476 130433 49 15 14 53 1 0 90 43 28 70 chain 25549 chr6 171115067 + 64230780 64231133 L1PA8 5853 + 5486 5853 101995 74 1 0 49 2 0 64 7 6 9 2 1 29 3 23 22 1 0 90 chain 17970 chr6 171115067 + 64241736 64242003 AluSg7 307 - 13 307 132938 32 8 33 15 1 2 59 21 22 131 chain 16926 chr6 171115067 + 64251978 64252317 L1PB1 5432 + 5114 5420 135779 20 1 0 12 1 0 12 5 1 10 2 0 51 2 1 15 1 0 44 1 0 13 29 15 19 8 5 14 2 0 24 1 0 13 9 8 13 1 0 16 chain 122510 chr6 171115067 + 64261448 64262850 L1PA4 6152 - 0 1425 30217 6 0 5 102 0 1 103 7 0 42 0 1 408 0 10 102 1 0 566 0 13 35 0 1 30 chain 78686 chr6 171115067 + 64295179 64296219 L1PA10 4194 + 3129 4142 44198 10 1 3 91 27 5 62 5 0 158 9 10 463 0 2 178 2 0 6 3 0 25 chain 24953 chr6 171115067 + 64325115 64325402 AluSp 311 - 12 300 105038 261 0 1 26 chain 19052 chr6 171115067 + 64381642 64381877 AluSc5 308 - 6 240 129964 57 1 0 177 chain 24603 chr6 171115067 + 64382554 64382919 MER57A1 433 + 0 368 106982 21 0 1 14 0 2 46 15 17 77 9 11 95 4 0 35 0 1 4 1 0 44 chain 17963 chr6 171115067 + 64397885 64398101 AluY 311 + 82 297 132952 50 0 1 64 2 0 100 chain 11686 chr6 171115067 + 64443287 64443483 L1PA16 3655 - 36 205 153538 16 5 0 11 19 0 13 4 1 128 chain 151319 chr6 171115067 + 64445987 64447635 L1PA3long 6157 - 1008 2655 24430 96 1 0 1551 chain 90168 chr6 171115067 + 64447635 64448640 L1PA3long 6157 + 5153 6157 39493 231 1 0 773 chain 25038 chr6 171115067 + 64450042 64450386 THE1B 368 + 0 368 104605 44 0 16 69 0 3 66 3 0 108 19 27 35 chain 159451 chr6 171115067 + 64455980 64458060 L1P2 5180 - 1186 3243 23409 209 0 1 97 1 0 56 4 1 5 0 3 238 1 0 121 0 1 5 8 3 56 5 4 91 1 0 140 16 2 187 2 3 377 3 1 416 6 5 35 chain 97941 chr6 171115067 + 64458196 64459460 L1PA13 3608 - 1042 2311 37296 89 2 1 4 0 1 50 0 1 455 0 4 11 2 1 97 0 1 284 2 3 4 1 0 263 chain 201723 chr6 171115067 + 64464090 64466548 L1PA6 6164 - 2 2530 19085 154 16 16 165 0 1 303 0 2 444 0 60 30 0 1 343 1 0 138 2 0 133 0 4 188 0 1 44 12 13 167 4 6 246 0 1 68 chain 88195 chr6 171115067 + 64466548 64467663 MER11A 1151 + 0 1151 40301 17 0 1 181 2 0 28 0 4 63 0 2 6 1 0 86 0 1 416 6 5 23 0 1 28 3 0 6 0 35 182 7 6 60 chain 26531 chr6 171115067 + 64473324 64473701 THE1C 375 + 0 375 97928 87 4 5 87 22 19 57 0 1 94 1 0 25 chain 24317 chr6 171115067 + 64489069 64489359 AluY 311 + 0 295 108558 126 0 5 164 chain 272430 chr6 171115067 + 64489641 64492782 L1PA5 6144 - 2 3140 15052 7 4 0 51 3 4 3076 chain 21158 chr6 171115067 + 64496299 64496592 L1PA8 5853 + 5565 5853 123346 43 2 0 74 1 0 6 2 1 51 2 1 19 1 0 39 0 1 53 chain 21489 chr6 171115067 + 64497572 64497841 AluSp 311 + 20 292 122182 89 7 9 163 0 1 10 chain 10253 chr6 171115067 + 64502369 64502486 L1PA5 6144 + 6021 6138 159360 117 chain 11294 chr6 171115067 + 64512206 64512356 L1PA8 5853 + 5705 5853 155074 35 2 1 19 4 3 90 chain 6648 chr6 171115067 + 64518714 64518849 MER33 330 + 117 273 180107 9 1 0 27 20 43 56 4 3 18 chain 13293 chr6 171115067 + 64537768 64538997 L1PB1 5432 + 2101 5089 41637 112 17 18 22 1 0 116 7 15 108 1 2 93 0 5 28 0 17 171 0 1734 67 5 9 47 0 13 119 0 1 4 14 13 67 31 11 60 1 0 119 0 1 10 3 0 6 chain 513900 chr6 171115067 + 64539002 64545105 L1PA5 6144 + 0 6144 5789 120 4 18 13 22 34 944 0 1 39 16 7 270 0 4 946 0 2 48 2 0 102 0 1 787 0 1 1001 5 13 888 0 1 5 2 1 47 0 8 237 18 19 587 chain 3623 chr6 171115067 + 64545264 64545599 L1PB1 5432 + 5114 5413 41637 21 1 0 12 16 11 11 8 6 7 1 0 3 10 0 35 2 1 16 1 0 44 1 0 15 4 1 17 28 18 12 1 0 4 1 0 22 1 0 20 0 3 11 1 0 9 chain 5869 chr6 171115067 + 64549302 64549377 L1MA5 2750 - 149 223 186480 37 1 0 37 chain 153919 chr6 171115067 + 64551507 64553382 L1PA7 6471 - 4 1887 24099 330 1 0 27 0 3 88 3 0 59 0 1 332 4 6 246 0 1 330 1 0 234 0 2 130 0 4 90 chain 28163 chr6 171115067 + 64553398 64553741 L1PA7 6471 + 4213 4559 92417 39 1 0 166 0 4 137 chain 411656 chr6 171115067 + 64559006 64564512 L1PA8 5853 + 108 5853 9756 197 0 4 167 20 34 406 0 1 498 2 0 134 1 5 222 7 8 326 11 12 154 11 12 139 0 1 232 13 14 88 0 1 118 0 1 6 318 0 46 3 7 14 0 4 159 8 6 462 1 0 141 8 9 923 0 528 79 0 1 297 1 0 44 2 0 26 0 1 45 1 0 8 1 0 52 2 1 19 10 9 84 chain 506952 chr6 171115067 + 64582898 64588985 L1PA5 6144 - 0 6144 6400 44 0 1 523 2 1 198 1 0 4 0 11 140 1 2 8 1 0 584 1 0 135 0 25 811 1 2 1157 0 2 56 0 3 123 2 1 378 1 0 224 3 2 154 0 1 129 0 1 194 1 2 58 9 0 959 66 92 119 chain 27987 chr6 171115067 + 64589973 64590347 MLT2A1 477 + 1 393 93051 141 0 1 26 0 4 22 1 16 36 1 0 77 1 0 58 1 0 5 0 1 5 chain 503813 chr6 171115067 + 64597255 64603619 L1PA7 6471 + 3 6461 6617 140 0 15 8 21 6 231 0 1 129 0 12 98 0 7 194 0 1 477 0 1 18 4 5 476 1 2 70 0 3 68 0 12 125 0 2 30 7 9 483 0 6 76 0 3 144 0 16 321 0 3 273 1 0 13 0 1 67 5 9 11 7 11 244 13 13 62 0 2 439 6 8 159 0 1 11 1 3 7 0 1 148 0 2 859 1 0 8 0 1 73 2 1 96 0 3 120 2 3 33 5 6 254 1 0 86 0 1 190 1 5 35 3 0 7 chain 5392 chr6 171115067 + 64604784 64604846 MLT1C 463 + 401 463 191067 62 chain 15426 chr6 171115067 + 64635430 64635975 L1PA8 5853 - 0 245 140111 92 317 1 17 1 0 41 3 5 9 1 16 64 chain 10927 chr6 171115067 + 64643400 64643696 MER21B 843 - 530 843 156498 90 15 16 35 109 124 9 2 3 36 chain 87480 chr6 171115067 + 64643804 64644797 L1PA4 6152 + 5148 6152 40572 152 1 5 224 0 1 606 0 6 10 chain 76710 chr6 171115067 + 64650577 64651468 L1PA5 6144 - 0 890 45116 14 1 0 876 chain 21374 chr6 171115067 + 64655015 64655347 THE1C 375 - 33 375 122608 102 0 5 37 26 23 22 7 15 53 1 2 8 1 0 75 chain 4196 chr6 171115067 + 64656756 64656835 L1MA3 4352 + 4239 4314 204593 19 2 0 24 13 11 21 chain 115355 chr6 171115067 + 64671838 64673165 L1PA4 6152 + 4826 6140 32661 672 0 1 512 14 0 129 chain 15452 chr6 171115067 + 64676007 64676384 L1PB1 5432 + 5067 5413 140047 35 16 12 24 26 20 9 2 0 53 2 1 10 14 13 37 36 27 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 67188 chr6 171115067 + 64682435 64683251 L1PA7 6471 - 1 802 49571 262 0 1 12 1 3 211 18 0 312 chain 4219 chr6 171115067 + 64689062 64689217 MER58A 224 + 49 217 204309 30 87 100 38 chain 15837 chr6 171115067 + 64695599 64695875 L1PA14 3548 + 3186 3456 138835 35 1 0 12 0 1 35 0 4 58 1 0 11 5 1 36 4 2 12 7 5 16 7 6 36 chain 29470 chr6 171115067 + 64713565 64713940 THE1C 375 + 0 375 86754 167 0 1 18 1 0 189 chain 105655 chr6 171115067 + 64733529 64734836 LTR12C 1709 + 42 1709 35339 168 11 10 118 0 43 409 14 328 106 0 4 481 chain 409223 chr6 171115067 + 64734935 64739912 HERV9-int 5642 + 0 4812 9825 79 2 1 540 0 1 174 1 0 118 4 0 17 6 7 109 159 0 64 5 0 138 1 0 43 0 1 131 0 1 64 0 1 88 0 1 9 2 1 911 5 6 2307 chain 56011 chr6 171115067 + 64740884 64741722 LTR12C 1709 + 0 837 55117 17 1 15 53 8 10 243 0 43 79 16 7 141 0 1 150 1 0 31 56 5 42 chain 220 chr6 171115067 + 64741645 64741680 LTR12C 1709 + 1126 1161 58943 35 chain 3154 chr6 171115067 + 64741722 64742224 LTR12C 1709 + 1203 1709 58943 21 0 4 481 chain 12607 chr6 171115067 + 64778397 64778551 L1PA5 6144 + 5978 6135 149814 84 0 3 70 chain 133159 chr6 171115067 + 64789474 64791016 L1PA5 6144 - 7 1566 27396 223 1 5 272 0 1 117 1 10 222 1 0 8 0 4 697 chain 7246 chr6 171115067 + 64792265 64792408 L1MA3 4352 - 0 134 175793 13 10 7 4 1 0 15 3 2 23 1 0 6 1 0 23 2 0 41 chain 520611 chr6 171115067 + 64801650 64807635 L1PA4 6152 - 0 5993 5093 6 0 5 102 0 1 145 1 0 592 1 0 2015 1 0 100 0 3 1278 0 3 226 0 1 483 1 0 516 2 1 516 chain 30061 chr6 171115067 + 64817211 64817587 MLT2A1 477 - 92 477 84627 24 0 1 131 0 1 23 0 2 28 0 4 30 0 1 140 chain 25765 chr6 171115067 + 64835391 64835702 AluY 311 + 0 306 101021 22 5 0 284 chain 77197 chr6 171115067 + 64839088 64839968 L1PA4 6152 - 571 1446 44867 200 6 5 33 5 0 444 0 1 192 chain 47805 chr6 171115067 + 64839968 64840525 L1PA4 6152 + 5586 6152 60617 411 1 5 139 0 5 6 chain 3671 chr6 171115067 + 64865663 64865720 MER96B 391 + 279 330 212379 15 1 0 9 5 0 27 chain 32194 chr6 171115067 + 64866335 64866759 THE1A-int 1579 + 0 429 80531 12 14 15 100 0 1 22 3 6 273 chain 37300 chr6 171115067 + 64866789 64867204 L1PA3long 6157 - 0 416 73079 192 0 1 223 chain 23465 chr6 171115067 + 64892826 64893207 THE1C 375 + 0 375 113290 13 2 0 48 33 34 35 1 0 49 22 19 151 1 0 26 chain 96380 chr6 171115067 + 64901230 64902296 L1PA3long 6157 - 3 1073 37708 142 0 4 924 chain 124309 chr6 171115067 + 64902297 64906793 L1PA3long 6157 + 4719 6153 29595 351 3080 18 1065 chain 46436 chr6 171115067 + 64903401 64903937 L1PA5 6144 - 6 542 61649 536 chain 54882 chr6 171115067 + 64908215 64908973 L1PA8 5853 - 0 750 55737 92 32 30 39 1 0 13 7 6 65 2 0 48 1 0 34 12 12 369 13 12 30 chain 59176 chr6 171115067 + 64908973 64909718 L1PA8 5853 + 4339 5098 53296 68 6 8 145 0 1 131 1 6 28 0 1 279 3 0 5 5 16 7 2 0 60 1 0 4 chain 19845 chr6 171115067 + 64929399 64929617 L1PA4 6152 - 472 690 127666 218 chain 37425 chr6 171115067 + 64929624 64930070 L1PA4 6152 + 5691 6137 72932 306 1 0 9 1 2 129 chain 61766 chr6 171115067 + 64944984 64945668 L1PA3long 6157 - 0 684 52009 684 chain 31700 chr6 171115067 + 64945680 64946033 L1P1 4361 + 3446 3799 81326 353 chain 3698 chr6 171115067 + 64946694 64946739 L1PA6 6164 - 7 52 211960 45 chain 278615 chr6 171115067 + 64948650 64952182 L1PA7 6471 - 7 3627 14712 5 2 0 10 1 0 338 3 2 363 0 1 131 2 0 311 0 1 36 1 0 4 0 1 312 1 0 45 0 1 26 0 1 259 0 2 404 0 2 51 5 6 40 0 5 107 0 1 7 2 0 39 1 2 131 0 1 23 10 16 89 3 19 71 1 48 30 2 1 34 25 7 215 8 26 27 0 11 17 0 1 340 chain 24803 chr6 171115067 + 64954734 64955023 L1PA5 6144 - 12 301 105874 289 chain 10881 chr6 171115067 + 64955023 64955141 L1PA5 6144 + 5708 5826 156657 118 chain 18680 chr6 171115067 + 64955740 64955939 AluYg6 310 + 109 308 130999 199 chain 42497 chr6 171115067 + 64982043 64982559 L1P2 5180 - 2899 3419 66016 76 0 2 60 0 1 176 0 1 204 chain 7105 chr6 171115067 + 65005133 65005213 L1PA4 6152 + 6048 6129 176719 27 0 1 53 chain 212043 chr6 171115067 + 65010341 65013363 HERVK22-int 3844 + 12 3844 18359 28 63 64 124 4 5 61 0 4 7 4 0 42 20 29 232 12 12 484 12 22 803 11 8 49 0 1 247 0 3 33 0 7 79 0 3 252 8 58 91 109 186 62 1 654 88 1 0 77 1 0 17 chain 28857 chr6 171115067 + 65013454 65013754 AluYg6 310 + 1 301 89637 300 chain 482122 chr6 171115067 + 65021470 65028076 L1PA7 6471 + 0 6466 7653 141 28 32 27 5 4 175 9 8 16 5 0 112 0 1 5 2 1 324 1 0 10 1 2 498 0 1 62 0 1 687 3 19 506 15 0 257 0 4 20 0 97 76 2 3 86 0 1 27 0 3 69 0 5 223 1 0 276 0 5 5 0 3 42 3 4 162 1 0 80 300 0 464 9 10 119 1 5 105 1 0 4 0 1 71 7 8 82 1 0 328 1 0 4 0 1 66 8 9 42 0 1 69 0 5 38 0 20 11 1 0 56 0 4 23 0 4 166 1 2 339 1 2 159 18 0 7 1 19 111 4 5 26 chain 8620 chr6 171115067 + 65025530 65025652 L1PA7 6471 + 3878 4000 167634 46 2 0 8 5 7 61 chain 2592 chr6 171115067 + 65025653 65025685 L1PA7 6471 + 4000 4032 231793 32 chain 37051 chr6 171115067 + 65036000 65036500 HERV1_LTRc 486 + 0 479 73456 60 0 5 27 6 0 113 30 15 212 5 0 47 chain 37888 chr6 171115067 + 65045045 65045565 HERV1_LTRc 486 + 0 486 72299 89 1 0 6 14 0 121 17 4 59 1 0 140 15 10 57 chain 317706 chr6 171115067 + 65045565 65049903 L1PB1 5432 + 1001 5395 12686 184 1 0 212 7 0 8 1 7 118 0 1 70 20 25 27 0 1 80 0 6 754 7 1 115 8 3 7 0 5 973 1 2 122 5 6 129 5 0 83 13 15 350 1 0 191 0 5 128 2 0 14 0 1 59 0 2 107 29 29 13 2 0 141 1 2 4 1 0 38 0 75 24 1 0 18 6 2 9 2 0 53 0 2 15 1 0 44 1 0 14 79 62 13 1 0 21 1 0 4 chain 394255 chr6 171115067 + 65052183 65056605 L1PA4 6152 + 1711 6151 10309 467 0 10 498 2 1 450 0 1 199 0 1 178 1 0 447 0 9 663 1 0 1516 chain 541610 chr6 171115067 + 65099653 65105689 L1PA2 6032 + 2 6032 2574 83 1 0 166 6 5 985 1 0 1329 1 0 680 3 0 976 0 1 433 0 1 1205 8 7 159 chain 12248 chr6 171115067 + 65115232 65115369 L1PA7 6471 + 4319 4456 151215 137 chain 48815 chr6 171115067 + 65115370 65116006 L1PA7 6471 + 4458 5113 59868 295 0 1 12 0 3 99 0 17 25 1 0 75 8 7 121 chain 111003 chr6 171115067 + 65116008 65117348 L1PA7 6471 + 5113 6465 33928 508 0 3 76 0 2 10 0 3 214 1 6 103 0 1 420 2 0 6 chain 5976 chr6 171115067 + 65129163 65129266 THE1C 375 - 270 375 185465 21 24 26 58 chain 533293 chr6 171115067 + 65157884 65163911 L1PA4 6152 + 121 6152 3807 2184 9 8 377 0 1 446 0 1 71 1 0 77 1 0 652 0 1 302 0 1 993 0 3 914 chain 22170 chr6 171115067 + 65165342 65165675 L1PA8 5853 - 0 325 119494 93 1 0 19 2 1 37 27 24 71 2 0 46 1 0 34 chain 56141 chr6 171115067 + 65179168 65179852 LTR13 1007 + 0 684 55043 374 11 12 242 2 1 55 chain 53676 chr6 171115067 + 65208362 65209076 L1PA8 5853 - 0 719 56559 93 1 0 19 2 1 50 1 0 11 1 0 69 2 0 9 0 7 30 1 0 69 0 1 47 1 2 19 14 15 13 0 2 262 chain 5922 chr6 171115067 + 65217126 65217192 L1PA5 6144 + 5818 5884 185971 66 chain 39655 chr6 171115067 + 65246902 65247330 L1PA2 6032 - 3 431 69820 428 chain 29250 chr6 171115067 + 65254446 65254783 L1PA4 6152 + 3170 3507 87790 337 chain 132258 chr6 171115067 + 65254784 65256268 L1PA4 6152 + 3509 4993 27572 1484 chain 100164 chr6 171115067 + 65256268 65258723 L1PA4 6152 + 4994 6143 36728 360 1 0 185 1305 0 604 chain 96174 chr6 171115067 + 65256818 65258119 LTR12C 1709 - 0 1709 37778 84 1 0 83 0 102 212 44 13 97 8 165 105 0 118 256 8 10 73 10 53 104 5 23 211 chain 63733 chr6 171115067 + 65259642 65260367 L1PA4 6152 - 12 737 51129 725 chain 28826 chr6 171115067 + 65260367 65260715 L1P1 4361 + 3994 4341 89777 84 0 2 71 1 0 154 1 0 23 2 1 12 chain 16237 chr6 171115067 + 65262841 65263116 MER4D1 891 + 628 891 137657 27 56 43 120 1 0 35 0 2 36 chain 16434 chr6 171115067 + 65274545 65274743 L1PA7 6471 + 6175 6365 137109 134 8 0 56 chain 442977 chr6 171115067 + 65278331 65284314 L1PA7 6471 + 756 6456 8954 110 0 2 207 6 7 259 0 2 5 25 8 15 0 1 13 8 11 42 0 1 332 306 4 91 4 1 27 0 3 11 0 4 123 1 0 136 0 1 398 1 11 59 0 1 130 2 0 22 0 1 95 6 10 306 8 7 85 5 9 96 0 1 119 2 0 6 0 1 193 0 1 101 0 1 169 0 2 8 10 6 6 3 0 93 5 11 302 0 23 81 22 0 142 0 4 277 2 0 424 4 0 247 9 12 78 1 0 605 0 1 140 chain 12218 chr6 171115067 + 65304195 65304327 L1PA4 6152 - 420 552 151350 132 chain 24616 chr6 171115067 + 65304328 65304601 L1PA4 6152 + 5735 6008 106909 273 chain 13250 chr6 171115067 + 65304601 65304743 L1PA4 6152 + 6009 6151 147286 142 chain 222753 chr6 171115067 + 65344764 65368692 L1PA4 6152 - 1549 5449 17722 397 0 1 265 2 1 211 0 1 287 20926 896 1179 5 6 175 0 2 141 2 0 338 chain 56608 chr6 171115067 + 65345926 65346570 L1PA4 6152 + 4583 5227 54619 644 chain 82184 chr6 171115067 + 65346570 65347496 L1PA4 6152 + 5228 6151 42688 297 3 0 626 chain 104572 chr6 171115067 + 65349432 65350622 L1PA3long 6157 + 4967 6157 35604 32 0 3 532 3 0 276 3 1 7 0 1 50 0 1 287 chain 317539 chr6 171115067 + 65368692 65372278 L1PA4 6152 + 2548 6143 12697 230 0 3 1983 0 1 533 0 4 82 0 1 758 chain 34208 chr6 171115067 + 65391578 65392045 HERV1_LTRb 511 - 0 511 77339 13 7 10 11 8 9 51 0 29 283 0 2 16 1 4 50 0 6 27 chain 123021 chr6 171115067 + 65397285 65398732 L1PA5 6144 - 2173 3617 29952 461 2 1 53 3 0 426 0 1 502 chain 185740 chr6 171115067 + 65398732 65400873 L1PA5 6144 + 4000 6135 20438 622 5 0 1155 2 0 33 0 1 324 chain 124514 chr6 171115067 + 65414728 65417273 L1PB1 5432 + 3320 5326 29536 6 0 1 151 21 25 44 5 1 180 6 4 85 0 5 140 0 1 58 494 0 301 1 5 8 2 0 8 3 10 136 0 1 136 4 0 81 0 1 4 11 10 71 10 1 13 45 53 125 4 12 17 0 2 42 108 66 10 1 0 6 5 4 12 18 12 52 18 16 44 1 0 12 28 16 18 chain 38062 chr6 171115067 + 65415444 65415886 L1PA3long 6157 + 5721 6157 72042 282 8 0 147 0 2 5 chain 24706 chr6 171115067 + 65420217 65420570 MER51C 639 + 241 613 106402 48 9 27 123 8 10 117 1 0 47 chain 27127 chr6 171115067 + 65440979 65441366 L1PA7 6471 + 5267 5619 95838 208 0 1 21 41 1 53 0 4 64 chain 56594 chr6 171115067 + 65441375 65442056 L1PA7 6471 + 5631 6312 54788 681 chain 12922 chr6 171115067 + 65442057 65442211 L1PA7 6471 + 6314 6470 148543 142 0 2 12 chain 36150 chr6 171115067 + 65483175 65483913 L1PA15 4387 - 31 794 74708 27 5 0 14 3 1 24 0 3 7 76 68 27 1 0 8 16 18 18 11 10 26 24 23 54 29 30 66 1 0 42 2 0 59 4 0 12 9 53 173 chain 21909 chr6 171115067 + 65496097 65496440 LTR9B 643 - 82 421 120589 32 0 1 4 16 12 81 35 34 175 chain 95034 chr6 171115067 + 65563551 65564646 L1PA4 6152 + 5044 6152 38081 136 0 5 597 1 9 361 chain 29685 chr6 171115067 + 65597001 65597334 L1PA4 6152 + 5819 6152 85882 333 chain 77065 chr6 171115067 + 65599389 65600438 MER11C 1089 + 0 1069 44934 246 0 9 58 0 4 68 1 0 147 87 81 75 0 4 7 1 0 38 0 1 36 0 8 81 0 1 22 0 1 33 1 0 144 0 1 4 chain 390423 chr6 171115067 + 65606033 65611186 L1PA7 6471 + 4 6364 10441 224 31 31 143 6 0 10 14 5 280 36 31 240 0 3 118 0 1 115 0 1 58 1 0 5 20 21 619 0 1 169 0 1 71 0 1 151 12 13 127 2 1 175 0 1 17 1 0 5 13 9 31 0 1 12 0 1 404 0 4 21 0 1 96 0 1239 194 12 7 12 10 0 78 10 11 67 0 1 118 3 0 68 4 5 303 0 1 5 2 1 215 0 1 73 1 0 203 11 1 299 0 1 229 0 1 9 chain 126774 chr6 171115067 + 65633348 65634915 THE1A-int 1579 - 0 1579 28866 110 0 7 341 0 4 199 0 1 423 1 0 488 0 1 5 chain 14706 chr6 171115067 + 65643186 65643360 L1PA7 6471 + 5619 5793 142255 174 chain 42089 chr6 171115067 + 65643360 65643879 L1PA7 6471 + 5794 6320 66509 243 0 1 225 1 9 43 2 0 5 chain 11598 chr6 171115067 + 65643884 65644039 L1PA7 6471 + 6326 6470 153899 66 11 0 78 chain 53964 chr6 171115067 + 65654385 65655016 LTR5A 1029 + 301 938 56392 578 0 6 53 chain 27928 chr6 171115067 + 65668358 65668656 AluYd8 298 + 0 298 93250 298 chain 6179 chr6 171115067 + 65703152 65703219 L1PA4 6152 - 433 500 159874 67 chain 31707 chr6 171115067 + 65703219 65703625 L1PA4 6152 + 5636 6152 81317 15 28 132 121 0 1 236 0 5 6 chain 2582 chr6 171115067 + 65703234 65703262 L1PA4 6152 - 515 543 159874 28 chain 84486 chr6 171115067 + 65712595 65713645 MER11C 1089 + 0 1069 41721 246 0 9 62 0 4 369 0 4 5 1 0 33 0 1 4 0 1 127 0 1 50 1 0 148 0 1 4 chain 42324 chr6 171115067 + 65714884 65715387 LTR17 781 + 255 781 66239 72 0 1 384 7 29 40 chain 369274 chr6 171115067 + 65716909 65721220 HERV17-int 4347 + 12 4347 11113 6 0 1 7 2 1 47 8 7 28 1 0 4 2 0 25 2 1 42 0 1 236 1 0 75 0 1 104 0 2 87 0 8 474 0 3 103 0 2 77 2 0 557 1 0 49 0 1 301 0 3 352 0 5 298 0 1 224 1 0 90 0 1 78 0 5 18 0 1 1009 chain 28568 chr6 171115067 + 65721534 65721860 LTR17 781 + 0 326 90875 326 chain 21988 chr6 171115067 + 65829768 65830069 AluY 311 + 20 307 120273 75 22 10 27 6 4 171 chain 90601 chr6 171115067 + 65850386 65851396 L1PA4 6152 + 5142 6152 39430 1010 chain 334404 chr6 171115067 + 65888347 65892101 L1PA4 6152 + 2380 6143 12042 791 3 0 83 0 5 233 1 5 443 0 1 2053 0 1 135 0 1 12 chain 134813 chr6 171115067 + 65966167 65967640 L1PA2 6032 - 1 1479 27054 13 4 9 1456 chain 10869 chr6 171115067 + 65976453 65976589 L1P3 4156 - 44 178 156700 5 2 0 129 chain 39543 chr6 171115067 + 65983275 65983809 LTR61 567 + 6 567 69967 19 0 1 29 0 11 125 2 4 17 2 0 23 11 26 306 chain 4076 chr6 171115067 + 65988285 65988332 MLT2B4 540 + 489 536 206257 47 chain 3320 chr6 171115067 + 66020999 66021034 U2 167 - 132 167 218565 35 chain 39794 chr6 171115067 + 66026387 66026849 L1PA7 6471 - 13 476 69634 186 0 1 276 chain 5789 chr6 171115067 + 66041755 66041828 L1MB8 1703 - 290 363 187259 73 chain 10775 chr6 171115067 + 66049315 66049454 MER44A 345 + 112 253 157097 57 0 2 82 chain 12480 chr6 171115067 + 66070974 66071113 L1PA4 6152 + 5861 6000 150338 139 chain 11231 chr6 171115067 + 66071126 66071258 L1PA4 6152 + 6011 6143 155306 132 chain 26161 chr6 171115067 + 66077803 66078181 THE1C 375 - 0 371 99362 25 1 0 163 22 19 37 9 6 121 chain 446827 chr6 171115067 + 66084623 66091521 L1PA8 5853 + 53 5848 8853 19 64 41 192 0 4 56 1 0 302 3 1 235 2 13 347 0 2 61 0 1 229 0 1 4 1 0 344 0 2 98 0 1 19 0 1 165 5 4 280 13 9 167 1 5 419 15 1 57 16 0 23 1 2 153 1062 0 904 2 0 147 0 1 93 2 0 553 0 2 170 12 14 369 1 0 44 2 0 72 1 0 11 12 10 39 2 1 19 1 0 88 chain 83776 chr6 171115067 + 66087918 66088937 L1PA7 6471 + 5452 6467 41998 169 1 0 47 1 0 128 1 2 656 3 0 13 chain 173014 chr6 171115067 + 66101307 66103215 L1PA3long 6157 + 4239 6147 21707 1908 chain 2847 chr6 171115067 + 66112831 66112875 MLT1G3 592 + 257 299 227918 8 2 0 34 chain 8779 chr6 171115067 + 66128182 66128285 L1PA8A 6298 - 488 591 166768 103 chain 34073 chr6 171115067 + 66128285 66128711 L1PA8A 6298 + 5851 6291 77510 171 7 0 129 0 21 119 chain 164498 chr6 171115067 + 66147749 66149638 L1PA5 6144 - 0 1896 22746 11 3 1 755 1 0 82 0 4 442 1 2 119 0 7 99 1 0 82 1 0 292 chain 10018 chr6 171115067 + 66173680 66173809 MER85 139 + 0 139 160494 88 1 11 40 chain 26458 chr6 171115067 + 66193584 66193939 THE1B 368 - 0 367 98214 170 2 0 15 1 0 4 0 1 4 3 2 117 0 15 39 chain 126545 chr6 171115067 + 66196763 66198316 L1PA7 6471 - 1695 3251 28880 36 0 1 249 0 1 992 4 5 272 chain 135702 chr6 171115067 + 66198316 66200026 L1PA7 6471 + 4756 6464 26896 843 0 2 15 9 8 357 0 1 155 3 0 176 5 6 59 0 1 21 2 1 58 2 0 5 chain 25128 chr6 171115067 + 66204158 66204465 AluYk4 311 - 3 303 104140 21 3 0 155 4 0 124 chain 35350 chr6 171115067 + 66219916 66220323 L1PA3long 6157 - 0 413 75733 231 5 10 92 0 1 79 chain 309017 chr6 171115067 + 66222447 66225844 L1PA3long 6157 + 2758 6157 13046 1606 0 2 1791 chain 6772 chr6 171115067 + 66234964 66235040 L1PA8 5853 - 0 76 179163 76 chain 34337 chr6 171115067 + 66243045 66243457 L1P1 4361 + 3301 3712 77147 209 1 0 202 chain 25588 chr6 171115067 + 66246916 66247248 L1PA7 6471 + 6136 6468 101789 178 2 1 5 0 1 147 chain 66735 chr6 171115067 + 66260232 66260941 L1HS 6032 - 2 711 49762 709 chain 100606 chr6 171115067 + 66260951 66262023 L1HS 6032 + 4249 5321 36602 1072 chain 160772 chr6 171115067 + 66273741 66275998 L1PA7 6471 + 4528 6469 23229 138 0 8 55 1 0 220 1 0 466 3 0 202 1 4 15 324 0 820 0 2 11 chain 25562 chr6 171115067 + 66278909 66279300 LTR7 482 + 0 476 101922 101 15 14 17 0 51 41 5 37 24 20 22 79 0 1 89 chain 33376 chr6 171115067 + 66304974 66305372 L1PA5 6144 + 5747 6144 78607 64 2 1 332 chain 380385 chr6 171115067 + 66327448 66331694 L1PA3long 6157 - 1 4246 10744 1229 0 1 1662 0 2 1343 4 0 8 chain 124986 chr6 171115067 + 66337238 66338760 LTR12C 1709 + 0 1709 29397 99 5 6 126 17 0 31 0 1 225 0 1 202 0 159 121 0 41 99 1 0 5 3 1 106 1 5 481 chain 15032 chr6 171115067 + 66358252 66358587 L1PB1 5432 + 5117 5421 141227 21 1 0 8 1 0 6 11 7 9 2 0 52 2 1 10 17 16 34 1 0 20 3 0 12 34 22 11 2 0 24 1 0 21 1 0 13 1 0 17 chain 5067 chr6 171115067 + 66393256 66393369 MER67D 511 + 392 487 194461 44 1 3 20 33 13 15 chain 175443 chr6 171115067 + 66397421 66399419 L1PA4 6152 + 4084 6143 21402 36 0 1 468 0 1 45 2 1 451 0 14 55 0 46 941 chain 110077 chr6 171115067 + 66399588 66401852 L1PA7 6471 - 6 1380 34197 8 1 0 85 891 0 74 3 1 336 0 1 346 3 2 258 1 2 202 0 3 56 chain 75330 chr6 171115067 + 66399701 66400573 MER11D 897 - 0 897 45860 287 1 24 81 1 3 502 chain 8471 chr6 171115067 + 66412709 66412850 MLT2D 439 + 2 135 168452 40 16 9 38 1 0 46 chain 2993 chr6 171115067 + 66425911 66425946 MLT2C2 476 - 0 35 225196 35 chain 22463 chr6 171115067 + 66427541 66427885 THE1B 368 + 0 368 118180 44 5 20 108 1 0 24 3 0 5 36 49 118 chain 102605 chr6 171115067 + 66436071 66437289 L1PA7 6471 - 6 1223 36104 145 1 0 184 3 0 508 1 4 376 chain 84568 chr6 171115067 + 66460251 66461311 L1P3 4156 + 3086 4139 41693 907 7 3 111 2 0 7 2 1 24 chain 157081 chr6 171115067 + 66462881 66464651 L1PA4 6152 + 4371 6143 23711 267 0 5 188 3 0 1312 chain 63115 chr6 171115067 + 66464684 66465431 L1PA7 6471 + 5702 6450 51395 606 1 2 140 chain 8789 chr6 171115067 + 66478277 66478373 L1PA4 6152 + 6050 6146 166707 96 chain 91347 chr6 171115067 + 66489261 66490256 L1PA2 6032 + 5033 6029 39175 5 0 1 990 chain 37394 chr6 171115067 + 66513528 66513956 L1PA4 6152 - 9 437 72960 428 chain 40775 chr6 171115067 + 66557816 66558368 MER41A 554 - 0 554 68207 123 1 0 4 4 1 16 9 15 395 chain 32908 chr6 171115067 + 66559250 66559712 LTR7B 505 - 0 503 79355 51 14 13 79 1 0 82 0 2 26 5 3 8 0 26 18 6 13 65 1 11 106 chain 215144 chr6 171115067 + 66572756 66575299 L1PA6 6164 - 2591 5146 18128 180 0 12 81 1 0 110 0 1 389 1 3 473 0 1 149 0 1 528 2 0 293 3 0 318 0 1 15 chain 218182 chr6 171115067 + 66575299 66577895 L1PA6 6164 + 3560 6162 17993 496 9 10 40 0 2 694 14 13 972 10 12 6 2 0 345 0 4 8 chain 29396 chr6 171115067 + 66595051 66595370 L1PA2 6032 - 457 776 87095 319 chain 42316 chr6 171115067 + 66595370 66595824 L1PA2 6032 + 5578 6032 66248 454 chain 26855 chr6 171115067 + 66606815 66607283 THE1D-int 1627 - 1132 1627 96790 32 48 48 17 4 20 34 3 5 87 1 0 112 16 25 76 2 1 20 2 4 14 chain 29900 chr6 171115067 + 66648677 66648993 AluYb9 318 + 0 316 85101 316 chain 528456 chr6 171115067 + 66681176 66687041 L1PA3long 6157 + 283 6157 4358 1572 0 1 676 1 9 458 0 1 1936 1 0 1221 chain 34929 chr6 171115067 + 66692385 66692786 L1P2 5180 - 2822 3227 76296 31 1 5 369 chain 52807 chr6 171115067 + 66692786 66693380 L1PA5 6144 + 5551 6142 57129 580 3 0 11 chain 11368 chr6 171115067 + 66709022 66709208 LTR12C 1709 - 501 773 154825 16 4 0 58 19 66 52 0 41 21 0 2 16 chain 5087 chr6 171115067 + 66726455 66726662 L1MC1 2226 - 37 220 194207 6 1 0 7 0 1 23 1 0 17 110 88 36 1 0 5 chain 62322 chr6 171115067 + 66787631 66788301 L1HS 6032 - 0 670 51745 670 chain 123032 chr6 171115067 + 66806056 66807531 SVA_C 1631 - 17 1624 30034 186 0 2 322 6 9 5 3 0 53 2 0 32 0 1 9 0 50 12 0 15 71 0 40 45 0 37 689 16 0 15 0 5 9 chain 4200 chr6 171115067 + 66810534 66810587 MER39 703 - 358 411 204534 53 chain 6259 chr6 171115067 + 66871396 66871539 L1MCb 1641 + 1136 1291 183097 31 0 5 14 50 57 48 chain 497748 chr6 171115067 + 66876402 66882836 L1PA6 6164 + 0 6159 6972 231 0 1 139 29 36 94 10 9 172 1 0 75 11 12 1464 0 7 84 2 1 8 0 1 7 0 19 20 8 10 178 0 1 203 0 3 56 0 1 359 0 1 83 0 1 188 4 8 153 343 0 64 5 9 137 4 15 1468 0 4 432 0 3 402 chain 26954 chr6 171115067 + 66879994 66880293 SVA_D 2077 + 1762 2061 96432 299 chain 29267 chr6 171115067 + 66883605 66884100 LTR10B 488 - 0 488 87709 261 48 47 49 59 53 50 0 1 15 1 0 12 chain 20997 chr6 171115067 + 66911387 66911820 MLT2A2 560 - 2 541 123930 52 0 1 6 20 19 67 16 125 21 79 78 11 10 8 151 chain 4431 chr6 171115067 + 66957977 66958028 L1PA6 6164 + 3224 3275 201569 51 chain 8888 chr6 171115067 + 66958028 66958126 L1PA6 6164 + 3280 3378 166192 98 chain 231594 chr6 171115067 + 66958130 66960882 L1PA6 6164 + 3381 6162 17225 934 1 0 143 0 12 259 0 1 584 0 1 192 0 2 322 0 1 159 2 15 156 chain 41936 chr6 171115067 + 66968537 66969075 LTR10F 562 + 0 562 66704 73 5 1 30 0 2 48 0 28 49 3 0 261 0 1 69 chain 203664 chr6 171115067 + 66971177 66974180 HERVIP10FH-int 2884 + 148 2866 18950 60 1 0 125 1 0 4 0 1 61 3 0 23 0 1 204 1 0 243 6 7 56 0 2 257 0 1 15 2 0 173 4 1 6 3 0 11 1 0 7 1 0 63 6 1 129 9 1 13 5 2 12 45 25 14 20 3 43 22 10 39 10 0 3 1 0 20 3 2 255 10 9 197 4 3 24 1 0 250 0 1 114 1 0 65 2 1 51 1 0 16 1 0 13 12 6 33 206 22 9 2 0 11 chain 38671 chr6 171115067 + 66974250 66974750 LTR10F 562 + 0 560 71192 90 0 1 16 1 29 65 0 31 328 chain 3808 chr6 171115067 + 66983392 66983437 MIR 256 + 67 112 210248 45 chain 27577 chr6 171115067 + 67015082 67015373 AluYb8 318 - 27 318 94414 291 chain 39690 chr6 171115067 + 67041170 67041671 MER9a1 513 - 0 513 69769 67 10 0 179 17 39 228 chain 15782 chr6 171115067 + 67065200 67065426 L1PA4 6152 + 5912 6139 139010 79 1 0 4 7 14 27 12 7 96 chain 8337 chr6 171115067 + 67069397 67069489 MER9a3 513 + 401 493 169195 92 chain 43864 chr6 171115067 + 67070595 67071095 MER9a3 513 + 14 513 64373 244 1 0 255 chain 20464 chr6 171115067 + 67071570 67071804 L1PA4 6152 - 11 245 125719 234 chain 164258 chr6 171115067 + 67076622 67078455 L1PA4 6152 + 4307 6140 22774 1833 chain 256936 chr6 171115067 + 67134546 67137523 L1PA5 6144 + 3150 6137 15887 101 0 5 425 0 3 622 0 1 663 0 1 92 1 0 231 1 0 18 1 2 356 0 1 466 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7 9 449 0 1 207 1 2 203 0 1 646 7 16 13 45 5 430 0 2 52 6 11 240 0 1 74 4 6 252 2 1 376 0 1 5 0 6 676 7 8 151 chain 23015 chr6 171115067 + 67261095 67261377 L1PA8 5853 + 5192 5474 115554 282 chain 10071 chr6 171115067 + 67261378 67261505 L1PA8 5853 + 5474 5600 160216 90 1 0 36 chain 5767 chr6 171115067 + 67261519 67261586 L1PA8 5853 + 5610 5677 187460 67 chain 9374 chr6 171115067 + 67280186 67280339 MER30 238 - 13 176 163692 92 27 37 34 chain 25896 chr6 171115067 + 67296030 67296349 AluY 311 + 0 303 100456 126 16 0 177 chain 53407 chr6 171115067 + 67301261 67301877 L1P1 4361 - 44 658 56753 12 1 0 155 1 0 447 chain 21149 chr6 171115067 + 67301877 67302117 L1P1 4361 + 3466 3706 121473 240 chain 151582 chr6 171115067 + 67305358 67307265 L1PA7 6471 - 1 1920 24388 319 12 13 179 0 7 56 0 2 280 6 1 169 0 7 417 0 1 34 2 0 30 9 0 278 0 8 60 0 2 56 chain 104739 chr6 171115067 + 67312575 67313690 L1HS 6032 + 4917 6032 35559 1115 chain 29894 chr6 171115067 + 67319376 67319731 L1PA3long 6157 - 1165 1510 84334 122 15 5 218 chain 103427 chr6 171115067 + 67319731 67320892 L1PA3long 6157 + 4996 6157 35892 72 0 1 946 1 0 142 chain 74677 chr6 171115067 + 67330249 67331250 L1PA8 5853 - 0 999 46176 93 1 0 14 9 8 38 24 22 70 2 0 44 1 0 313 1 3 4 1 0 13 0 2 218 0 2 155 chain 91056 chr6 171115067 + 67331258 67332442 L1PA8 5853 + 3623 4818 39274 281 0 2 62 0 1 188 0 3 11 12 18 69 0 1 75 6 0 70 0 1 14 0 3 203 0 1 89 4 3 100 chain 545230 chr6 171115067 + 67340727 67346868 L1PA3long 6157 + 5 6149 2042 311 0 1 1130 0 1 504 1 0 165 3 0 636 0 3 1193 0 1 401 0 2 723 1 0 814 8 10 5 2 0 244 chain 292930 chr6 171115067 + 67361758 67366378 L1PA5 6144 - 9 3400 13828 323 1 2 747 1 0 217 0 9 71 3 1 143 1 0 1245 0 1 73 1235 0 153 1 0 406 chain 5062 chr6 171115067 + 67365158 67365217 LTR12C 1709 - 722 781 194516 59 chain 127155 chr6 171115067 + 67366378 67367848 L1PA5 6144 + 1269 2756 28709 565 0 3 196 0 15 265 1 0 443 chain 160041 chr6 171115067 + 67379934 67381831 L1P1 4361 - 1886 3777 23332 289 0 1 934 12 11 9 0 1 405 16 19 6 3 0 99 7 0 117 chain 17390 chr6 171115067 + 67406054 67406253 L1PA7 6471 + 6261 6460 134533 199 chain 110103 chr6 171115067 + 67418392 67421502 L1P1 4361 - 44 1434 34181 6 0 1 5 2 0 98 0 1 58 1 0 354 0 1 57 1723 0 53 1 0 459 0 4 293 chain 26859 chr6 171115067 + 67421502 67421818 L1PA6 6164 + 4875 5191 96774 316 chain 64043 chr6 171115067 + 67421867 67422636 L1PA6 6164 + 5201 5970 50993 482 1 0 145 1 0 4 0 1 83 0 1 53 chain 13029 chr6 171115067 + 67422641 67422822 L1PA6 6164 + 5977 6159 148134 53 10 11 118 chain 13213 chr6 171115067 + 67440288 67440492 THE1B 368 + 168 368 147420 28 4 0 39 0 1 64 23 22 46 chain 3962 chr6 171115067 + 67463311 67463362 MLT1A 405 - 42 93 207948 51 chain 17418 chr6 171115067 + 67486256 67486650 L1PREC2 3366 + 2594 2963 134463 117 1 0 41 58 55 43 1 0 3 3 0 14 29 21 12 17 12 10 2 0 25 0 1 4 3 0 11 chain 8874 chr6 171115067 + 67489708 67489845 LTR12D 1347 - 648 910 166265 23 8 24 25 0 109 81 chain 4134 chr6 171115067 + 67490742 67490788 L1PA7 6471 + 6410 6456 205446 46 chain 96609 chr6 171115067 + 67521574 67522661 L1PA4 6152 - 1423 2511 37646 1035 0 2 4 1 0 47 chain 125159 chr6 171115067 + 67522661 67524065 L1PA4 6152 + 4744 6152 29339 260 0 1 158 0 3 986 chain 114154 chr6 171115067 + 67530279 67531751 L1PA8 5853 - 1287 2757 33050 201 0 1 30 10 9 134 7 9 341 0 1 271 0 1 17 5 0 157 1 0 298 chain 134772 chr6 171115067 + 67550424 67551921 L1PA3long 6157 - 0 1503 27013 806 0 6 44 1 0 165 0 1 481 chain 207874 chr6 171115067 + 67551921 67554238 L1PA3long 6157 + 2316 4640 18652 381 2 0 302 0 1 23 0 8 1609 chain 45045 chr6 171115067 + 67573811 67574294 L1PA2 6032 - 0 483 62999 483 chain 459508 chr6 171115067 + 67579674 67585292 L1PA6 6164 - 3 6162 8421 7 2 0 409 0 15 562 0 5 412 1 5 31 1 0 12 0 1 59 1 0 1119 1 2 323 13 0 10 3 20 4 1 0 456 0 1 316 0 1 57 12 0 191 0 1 393 0 1 18 4 3 488 0 1 30 0 1 132 0 1 155 0 11 237 0 511 158 chain 11242 chr6 171115067 + 67599556 67599703 L1PA4 6152 + 6003 6143 155250 8 7 0 132 chain 111138 chr6 171115067 + 67603471 67604719 L1PA3long 6157 - 0 1258 33902 459 2 1 200 0 10 186 0 1 401 chain 6123 chr6 171115067 + 67642697 67642777 MER50 708 + 450 529 184243 33 1 0 46 chain 134455 chr6 171115067 + 67658927 67660531 LTR12C 1709 + 0 1709 27117 263 0 1 344 0 1 228 1 0 273 1 0 7 3 1 106 0 4 175 0 103 203 chain 47714 chr6 171115067 + 67668538 67669057 L1PA5 6144 - 1490 2009 60680 519 chain 121726 chr6 171115067 + 67669057 67670504 L1PA5 6144 + 4669 6131 30470 606 0 4 8 2 0 28 0 11 523 1 2 136 8 9 135 chain 54020 chr6 171115067 + 67700975 67701662 LTR12_ 688 + 0 688 56347 90 26 1 30 0 25 226 0 1 315 chain 31586 chr6 171115067 + 67707585 67707984 L1PA7 6471 + 6066 6467 81516 193 0 1 164 5 8 7 2 0 28 chain 221135 chr6 171115067 + 67728024 67730492 L1PA4 6152 - 1 2468 17804 2022 1 0 445 chain 3530 chr6 171115067 + 67741755 67741802 LTR12D 1347 + 1049 1095 214881 33 1 0 13 chain 29115 chr6 171115067 + 67771864 67772172 AluYa5 310 - 2 310 88481 308 chain 538456 chr6 171115067 + 67805307 67811442 L1PA4 6152 + 2 6152 3077 311 0 3 634 0 4 85 0 1 204 1 0 454 3 0 1473 1 0 38 1 0 305 1 2 406 0 10 6 0 1 2064 0 1 148 chain 62976 chr6 171115067 + 67826520 67827248 L1PA4 6152 - 2 734 51455 5 0 2 139 0 1 53 1 2 530 chain 39299 chr6 171115067 + 67827253 67827753 L1PA7 6471 - 2 503 70325 10 2 0 347 0 3 65 0 1 71 1 0 4 chain 6668 chr6 171115067 + 67842622 67842701 L1PA8 5853 + 5774 5853 179920 79 chain 23559 chr6 171115067 + 67903278 67903564 L1PA7 6471 - 389 677 112803 108 0 1 162 0 1 16 chain 29457 chr6 171115067 + 67903565 67903932 L1PA7 6471 + 6104 6467 86814 32 0 1 324 5 0 6 chain 58567 chr6 171115067 + 67925443 67926108 L1PA3long 6157 - 0 671 53663 548 0 6 117 chain 116021 chr6 171115067 + 67926108 67927415 L1HS 6032 + 1784 3095 32445 785 1 0 3 0 5 518 chain 203894 chr6 171115067 + 67968853 67971152 L1PA3long 6157 - 2 2280 18931 949 0 1 418 22 0 910 chain 71007 chr6 171115067 + 67993410 67994427 L1PA8 5853 + 4829 5853 47924 103 0 1 4 1 5 62 7 5 41 0 1 161 9 15 104 0 1 231 1 0 42 6 3 63 2 0 5 17 20 4 0 1 39 2 1 19 1 0 93 chain 3143 chr6 171115067 + 67997879 67997915 L1PA6 6164 + 6126 6162 222094 36 chain 23324 chr6 171115067 + 67998532 67998816 L1P1 4361 + 4060 4341 114061 91 1 0 154 1 0 23 2 1 12 chain 48702 chr6 171115067 + 68000000 68000566 L1PA5 6144 + 5555 6125 59954 46 0 4 520 chain 480191 chr6 171115067 + 68004451 68010981 L1PA7 6471 - 2 6471 7725 60 8 0 7 0 8 48 0 4 25 8 9 30 0 1 145 0 1 47 38 1 383 0 2 60 88 0 9 5 8 408 1 2 17 1 2 5 1 0 4 0 1 189 9 8 338 1 2 386 1 2 247 11 10 851 0 1 446 2 0 5 7 10 18 0 1 21 7 8 139 0 1 84 0 7 190 6 5 460 5 3 150 6 9 312 7 26 73 0 1 65 0 11 201 4 0 6 4 8 131 31 36 46 0 2 71 21 20 5 3 0 57 1 0 47 1 0 39 3 0 22 1 0 7 1 0 59 1 2 78 26 34 16 19 20 130 2 3 63 chain 27843 chr6 171115067 + 68017816 68018161 L1PA7 6471 + 6126 6469 93549 74 0 1 256 4 1 11 chain 42688 chr6 171115067 + 68039939 68040506 MLT2A2 560 + 0 560 65792 78 16 6 110 1 4 362 chain 23751 chr6 171115067 + 68055191 68055476 AluY 311 + 11 298 111768 121 0 1 148 0 1 16 chain 63776 chr6 171115067 + 68085604 68086339 L1PA4 6152 - 0 752 51111 407 1 21 280 3 0 44 chain 6968 chr6 171115067 + 68115147 68115230 LTR8 732 + 643 726 177691 83 chain 71087 chr6 171115067 + 68125783 68126588 L1PA4 6152 - 0 811 47896 6 0 5 139 0 1 660 chain 455021 chr6 171115067 + 68132340 68138244 L1PA7 6471 - 4 5912 8582 74 3 0 75 5 6 181 1 0 429 0 2 81 1 0 510 9 8 77 3 5 440 0 1 4 1 0 87 0 4 180 10 11 184 17 5 98 2 0 257 6 8 6 2 0 959 2 0 12 0 2 30 9 0 27 0 1 45 0 1 25 16 26 487 10 12 158 0 1 130 0 1 207 2 0 5 0 2 195 8 11 40 9 10 505 0 1 56 0 2 224 chain 4244 chr6 171115067 + 68145220 68145271 MSTD 398 + 319 370 203950 51 chain 10565 chr6 171115067 + 68154033 68154147 L1PA2 6032 - 5 119 157972 114 chain 74488 chr6 171115067 + 68167884 68168909 MER11A 1151 - 0 1144 46282 163 4 5 16 1 0 30 1 2 14 0 1 58 10 11 9 0 34 239 0 1 24 0 4 96 0 1 149 4 0 61 14 0 13 8 11 30 0 91 81 chain 133115 chr6 171115067 + 68171512 68173137 L1PA7 6471 + 4826 6469 27403 667 0 1 127 1 0 77 0 2 84 0 14 658 0 2 11 chain 170936 chr6 171115067 + 68179006 68180970 L1PA5 6144 + 4174 6137 21951 779 10 4 429 0 3 444 0 1 233 0 1 69 chain 23435 chr6 171115067 + 68190484 68190777 AluY 311 + 0 287 113444 125 5 1 7 2 0 154 chain 39558 chr6 171115067 + 68190777 68191210 L1PA4 6152 + 5718 6151 69950 433 chain 111275 chr6 171115067 + 68195303 68196570 L1PA5 6144 - 2431 3698 33823 203 0 1 224 1 0 839 chain 213243 chr6 171115067 + 68196570 68199001 L1PA5 6144 + 3706 6132 18280 1239 7 0 479 0 1 569 0 1 137 chain 22297 chr6 171115067 + 68224319 68224586 L1PA7 6471 - 1136 1403 118170 267 chain 84744 chr6 171115067 + 68224586 68225651 L1PA7 6471 + 5368 6438 41620 246 2 0 522 0 1 143 9 7 20 18 17 93 0 9 12 chain 41439 chr6 171115067 + 68229761 68230275 L1PA7 6471 + 5953 6461 67362 428 6 0 80 chain 22142 chr6 171115067 + 68241862 68242122 L1PA7 6471 + 5870 6131 119613 17 0 1 243 chain 28081 chr6 171115067 + 68242123 68242463 L1PA7 6471 + 6131 6469 92703 327 2 0 11 chain 22702 chr6 171115067 + 68260656 68260906 L1PA5 6144 + 5350 5600 117061 250 chain 45191 chr6 171115067 + 68260906 68261420 L1PA5 6144 + 5618 6132 62835 514 chain 490638 chr6 171115067 + 68262251 68268689 L1PA7 6471 - 6 6471 7335 34 2 3 713 1 0 509 1 2 211 6 8 8 1 0 305 7 14 450 16 2 4 1 0 492 2 1 212 1 0 364 3 0 488 1 4 7 0 4 198 9 10 161 0 2 34 0 1 194 0 1 270 1 0 359 0 3 40 0 1 92 19 21 14 0 1 53 0 1 282 33 32 19 0 2 33 8 9 44 0 10 216 27 28 87 5 0 162 0 10 91 0 1 148 chain 27585 chr6 171115067 + 68282232 68282542 AluYg6 310 - 15 310 94396 7 15 0 288 chain 28819 chr6 171115067 + 68299695 68300099 MLT2A1 477 + 0 403 89808 44 4 6 88 1 2 29 1 5 219 8 0 10 chain 26670 chr6 171115067 + 68307303 68307631 L1PA7 6471 - 18 346 97424 270 0 1 52 1 0 5 chain 131918 chr6 171115067 + 68323195 68324820 L1PA7 6471 - 16 1638 27651 249 0 2 340 1 0 228 0 3 6 3 0 10 1 0 73 0 1 194 1 0 393 4 1 122 chain 64977 chr6 171115067 + 68324820 68325604 L1PA7 6471 + 4034 4829 50504 100 0 5 284 2 0 246 0 8 152 chain 106043 chr6 171115067 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13 16 36 0 26 29 0 4 174 19 15 5 2 0 133 1 2 101 0 1 802 0 1 6 0 10 314 40 28 190 49 13 10 6 5 8 2 0 22 chain 177113 chr6 171115067 + 68455389 68457422 L1PA4 6152 - 0 1993 21241 148 5 8 948 0 1 4 1 0 79 43 0 805 chain 59228 chr6 171115067 + 68477075 68477810 L1PA7 6471 + 5721 6457 53266 126 0 5 386 4 12 12 12 0 195 chain 10011 chr6 171115067 + 68487017 68487146 MER85 139 + 0 139 160533 90 0 10 39 chain 139059 chr6 171115067 + 68495667 68497216 L1PA3long 6157 + 4614 6157 26285 1459 6 0 84 chain 11930 chr6 171115067 + 68506807 68507092 L1PB1 5432 + 5168 5427 152479 52 3 2 9 27 26 24 1 0 15 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 12 1 0 6 2 0 5 chain 64859 chr6 171115067 + 68514552 68515331 L1PA7 6471 - 5 784 50627 779 chain 18028 chr6 171115067 + 68522720 68522954 LTR10B1 532 - 0 237 132781 42 0 4 177 1 0 14 chain 51498 chr6 171115067 + 68531613 68532406 LTR12D 1347 + 405 1347 57967 32 0 150 105 114 14 207 12 14 58 0 97 265 chain 5260 chr6 171115067 + 68531780 68531838 LTR12D 1347 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chr6 171115067 + 68627543 68627925 L1PA11 4918 + 4152 4508 109464 62 6 0 114 5 0 20 0 1 17 10 4 23 2 1 13 2 0 5 4 0 63 2 0 13 2 1 19 chain 12859 chr6 171115067 + 68629252 68629436 L1P3 4156 - 17 198 148801 24 2 1 9 2 0 147 chain 59738 chr6 171115067 + 68629592 68630393 L1PA8A 6298 + 5481 6290 52970 98 5 6 12 1 4 98 0 1 18 5 6 111 4 5 310 1 0 33 0 1 4 1 2 100 chain 112361 chr6 171115067 + 68632301 68633538 L1PA3long 6157 - 0 1241 33572 12 0 3 400 0 1 825 chain 36473 chr6 171115067 + 68633538 68633962 L1HS 6032 + 885 1309 73783 424 chain 37821 chr6 171115067 + 68638998 68639447 L1P3 4156 - 509 960 72381 173 0 2 276 chain 51819 chr6 171115067 + 68639449 68640116 L1PA7 6471 + 5783 6464 57738 278 0 8 68 9 16 48 0 2 93 3 0 168 chain 165873 chr6 171115067 + 68650680 68652794 L1PA7 6471 + 4330 6465 22529 274 9 10 57 0 4 87 0 1 50 0 4 47 2 1 84 0 1 35 19 16 18 1 0 580 0 4 18 1 0 6 1 6 247 0 1 242 0 3 144 0 2 183 0 1 9 chain 249326 chr6 171115067 + 68657061 68660250 L1PA7 6471 - 10 3250 16293 85 0 1 103 0 2 133 0 1 501 0 1 20 1 0 409 4 1 50 0 5 29 1 0 217 0 16 65 0 4 422 15 23 55 0 1 8 21 20 117 0 1 13 6 11 73 0 1 57 0 3 252 4 7 168 0 3 58 1 2 223 0 1 78 chain 76417 chr6 171115067 + 68660250 68661214 L1PA7 6471 + 2203 3160 45253 214 1 0 103 0 2 40 15 8 137 5 4 449 chain 4548 chr6 171115067 + 68661532 68661580 L1P2 5180 + 2831 2879 200235 48 chain 24133 chr6 171115067 + 68673480 68673766 AluSg7 307 + 10 297 109568 116 0 1 170 chain 41850 chr6 171115067 + 68693380 68693836 L1PA2 6032 - 0 456 66827 456 chain 8971 chr6 171115067 + 68695903 68696005 L1PA2 6032 + 5928 6030 165766 102 chain 4088 chr6 171115067 + 68711402 68711457 L1MA2 4263 - 149 205 206096 9 1 0 17 0 2 28 chain 34340 chr6 171115067 + 68711911 68712490 MLT2A1 477 - 0 477 77145 52 140 41 214 6 3 167 chain 173604 chr6 171115067 + 68732724 68734908 L1PA7 6471 - 4 2220 21636 6 4 0 195 1 0 268 6 15 137 0 1 224 3 0 55 0 6 176 0 6 33 0 14 33 7 0 8 0 7 336 3 0 114 0 1 152 0 4 244 8 11 160 1 0 10 chain 57966 chr6 171115067 + 68750113 68750823 LTR30 714 - 0 712 53991 81 0 2 7 1 0 134 0 3 29 8 9 107 3 0 340 chain 9463 chr6 171115067 + 68756456 68756610 L1MA7 2200 + 861 1014 163261 66 16 17 65 2 0 5 chain 102954 chr6 171115067 + 68766366 68767622 L1PA7 6471 - 468 1727 36005 285 4 7 89 2 0 545 0 1 302 11 12 18 chain 36880 chr6 171115067 + 68767630 68768091 L1PA7 6471 + 6010 6468 73685 160 7 0 7 0 7 124 0 1 152 4 0 7 chain 15218 chr6 171115067 + 68843590 68843820 L1MA2 4263 - 3113 3345 140721 155 15 18 31 6 5 23 chain 26898 chr6 171115067 + 68851428 68851947 LTR3A 482 + 0 482 96634 14 19 16 43 37 0 146 48 39 8 2 0 39 2 3 62 0 7 6 6 0 37 11 23 39 chain 49656 chr6 171115067 + 68863318 68864246 L1PA7 6471 - 11 628 59266 13 1 0 443 311 0 66 0 1 94 chain 13026 chr6 171115067 + 68872952 68873100 L1PA7 6471 - 1 149 148153 148 chain 78918 chr6 171115067 + 68886256 68887125 L1PA3long 6157 - 0 870 44096 563 0 1 306 chain 49221 chr6 171115067 + 68890618 68891267 LTR6A 649 - 0 649 59574 20 7 8 32 4 0 157 1 0 313 14 18 101 chain 90466 chr6 171115067 + 68905593 68906618 L1PA3long 6157 + 5102 6157 39478 915 0 30 110 chain 102333 chr6 171115067 + 68918076 68919221 L1PA4 6152 + 5001 6146 36188 1145 chain 384831 chr6 171115067 + 68922892 68928161 L1PA7 6471 - 5 5653 10612 421 0 1 239 278 0 17 14 18 140 23 22 31 8 8 30 0 1 113 2 3 226 0 1 70 9 5 69 0 1 52 4 16 30 1 0 120 2 3 154 0 4 369 9 631 174 13 13 71 0 2 51 9 7 26 0 4 219 0 1 464 9 0 35 7 16 80 0 11 94 1 2 166 22 23 58 8 1 671 0 1 85 0 3 535 8 8 32 chain 25146 chr6 171115067 + 68923559 68923830 AluYa5 310 - 14 284 104027 170 1 0 100 chain 39501 chr6 171115067 + 68946529 68946972 L1PA3long 6157 + 5713 6157 70021 110 0 1 333 chain 109683 chr6 171115067 + 68961126 68962769 L1PB2 3958 - 120 1696 34284 61 4 3 21 2 0 20 0 3 39 0 6 4 1 0 61 7 6 67 0 1 5 1 0 90 11 7 5 2 0 56 5 2 4 1 0 16 1 0 54 10 8 75 9 5 10 1 0 202 20 3 80 1 0 31 13 10 13 28 0 125 2 0 264 8 6 213 chain 25953 chr6 171115067 + 68969327 68969688 THE1B 368 - 0 368 100193 49 5 13 114 2 0 28 1 0 46 9 11 107 chain 3435 chr6 171115067 + 68972093 68972131 MADE1 96 + 8 46 216480 38 chain 529991 chr6 171115067 + 68993770 68999945 L1PA3long 6157 + 4 6156 4189 59 7 0 515 0 1 131 0 7 1646 30 0 18 0 1 1234 0 1 1027 0 1 885 0 2 470 0 1 153 chain 310985 chr6 171115067 + 69009533 69013508 L1PA7 6471 - 5 4011 12957 22 0 1 4 1 0 308 1 0 510 1 0 72 0 1 4 1 0 199 0 1 81 0 1 194 6 7 47 1 0 427 0 1 218 1 0 4 0 1 349 1 3 8 5 0 7 1 3 46 9 22 92 10 9 220 0 5 113 8 7 379 0 4 53 19 28 54 0 2 150 0 8 99 0 1 63 9 0 178 chain 3728 chr6 171115067 + 69017919 69017968 L1PA2 6032 + 5985 6032 211507 34 2 0 13 chain 21367 chr6 171115067 + 69030977 69031213 L1PA4 6152 - 16 252 122627 236 chain 29587 chr6 171115067 + 69063099 69063535 MLT2A1 477 - 0 477 86249 37 5 0 3 1 0 11 3 41 132 0 1 48 0 1 23 0 1 9 4 1 55 4 5 48 9 17 44 chain 150104 chr6 171115067 + 69063535 69065541 HERVL-int 5654 - 0 4515 24600 761 8 15 78 46 2528 190 1 10 50 0 1 259 1 8 498 0 1 20 14 15 54 0 1 26 chain 3399 chr6 171115067 + 69069633 69069674 L1MCa 1829 - 1330 1371 217084 41 chain 20629 chr6 171115067 + 69071203 69071552 THE1D 372 + 0 347 125193 175 1 0 10 67 64 12 0 2 12 0 1 64 1 0 7 chain 23778 chr6 171115067 + 69072316 69072613 L1PA8A 6298 - 7 305 111606 106 5 4 26 0 2 160 chain 5683 chr6 171115067 + 69089945 69090014 L1MA2 4263 - 714 783 188261 69 chain 64914 chr6 171115067 + 69095024 69095901 MER11A 1151 + 237 1151 50606 52 8 5 38 0 2 199 3 5 22 1 0 113 9 12 5 1 0 55 0 4 56 1 0 8 1 0 5 7 41 223 6 5 64 chain 4769 chr6 171115067 + 69112375 69112432 MST-int 1221 - 926 983 197709 57 chain 83419 chr6 171115067 + 69142200 69143089 L1HS 6032 + 5143 6032 42148 889 chain 37768 chr6 171115067 + 69146979 69147487 MLT2A2 560 + 0 518 72465 182 2 1 220 1 12 63 6 4 5 0 2 29 chain 499987 chr6 171115067 + 69159885 69166591 L1PA7 6471 - 3 6471 6843 328 299 14 156 0 7 71 1 2 186 1 4 50 18 24 23 0 4 354 1 7 63 7 0 220 1 0 65 1 5 224 0 1 831 22 6 238 0 1 484 1 4 319 56 16 120 12 0 465 0 1 4 10 9 312 1 2 140 1 3 206 0 29 5 0 2 31 2 1 143 36 20 154 0 1 183 1 0 79 7 6 121 0 1 251 1 2 22 0 8 35 0 2 83 0 59 261 chain 205314 chr6 171115067 + 69171449 69173791 L1PA4 6152 - 6 2349 18835 142 2 0 5 3 0 5 11 16 193 0 2 1154 1 0 826 chain 77768 chr6 171115067 + 69173791 69174658 L1PA4 6152 + 2933 3800 44446 867 chain 43416 chr6 171115067 + 69187999 69188469 L1PA2 6032 + 5561 6031 64915 470 chain 47183 chr6 171115067 + 69214020 69214782 L1PB1 5432 + 4686 5420 61059 115 1 0 4 0 4 294 7 6 5 1 0 24 1 2 6 1 0 10 17 11 53 2 1 15 1 0 32 1 0 12 1 0 11 19 6 30 15 14 5 2 0 24 1 0 21 1 0 13 1 0 16 chain 44085 chr6 171115067 + 69218447 69219206 L1PB1 5432 - 17 740 64116 11 1 0 13 1 0 21 1 0 24 2 0 5 42 32 13 15 10 6 1 0 44 1 0 15 2 1 47 23 17 9 1 0 7 3 2 21 3 0 12 1 2 301 2 0 88 1 0 22 chain 13268 chr6 171115067 + 69219214 69219412 L1PB1 5432 + 4469 4667 147217 27 6 4 129 7 9 29 chain 16653 chr6 171115067 + 69223742 69224036 L1P3 4156 + 3854 4138 136523 48 39 40 58 2 0 44 7 1 62 2 0 9 2 1 21 chain 115978 chr6 171115067 + 69227390 69228659 L1PA3long 6157 - 0 1273 32467 843 0 4 426 chain 29580 chr6 171115067 + 69242141 69242451 AluYa5 310 - 0 310 86276 310 chain 76890 chr6 171115067 + 69243144 69244248 LTR12C 1709 + 0 1709 45035 256 10 11 24 4 5 42 7 50 76 3 0 5 17 19 230 8 102 17 33 393 209 0 101 78 23 29 62 chain 3203 chr6 171115067 + 69246244 69246283 L1PREC2 3366 + 1752 1792 220894 18 0 1 21 chain 96687 chr6 171115067 + 69246302 69247512 L1PA7 6471 - 2 1215 37648 223 0 1 322 0 1 222 12 14 13 0 1 50 2 0 366 chain 199811 chr6 171115067 + 69247513 69263040 L1PA7 6471 + 3766 6465 19224 25 0 1 43 0 2 238 1 2 291 0 1 32 0 4 111 3 0 35 0 1 235 0 3 159 1 0 144 12836 0 195 0 1 258 0 1 74 0 2 25 0 1 307 5 3 15 1 0 345 1 2 136 4 0 7 chain 19720 chr6 171115067 + 69255502 69255760 LTR22B 500 - 1 261 128040 11 6 8 241 chain 2877 chr6 171115067 + 69286177 69286216 MER1B 344 + 289 327 227410 4 1 0 34 chain 119562 chr6 171115067 + 69304527 69306304 L1PA7 6471 - 4 1473 31194 6 5 0 362 1 3 289 303 0 186 2 0 6 6 7 11 1 0 599 chain 5851 chr6 171115067 + 69306320 69306385 L1PA7 6471 + 4909 4974 186676 65 chain 4700 chr6 171115067 + 69310146 69310201 MLT2A2 560 + 0 55 198538 55 chain 180825 chr6 171115067 + 69310245 69312326 L1PA4 6152 - 0 2046 20916 6 0 5 814 0 1 32 1 0 330 43 0 676 0 2 120 0 1 59 chain 54843 chr6 171115067 + 69312326 69312935 L1PA4 6152 + 3499 4119 55525 187 0 11 422 chain 393510 chr6 171115067 + 69313421 69319174 HERVL-int 5654 + 0 5645 10338 109 2 1 345 6 1 194 2 0 231 701 568 245 2 1 24 0 1 83 1 0 20 6 7 29 0 4 152 3 4 71 1 2 660 0 1 462 1 0 147 0 8 397 12 24 396 0 1 26 10 0 596 0 1 414 10 16 29 8 11 124 8 10 96 1 2 64 0 3 65 chain 4080 chr6 171115067 + 69335835 69335884 L1PA8 5853 + 5800 5850 206186 22 0 1 27 chain 49674 chr6 171115067 + 69338902 69339454 L1PA3long 6157 + 5603 6157 59252 547 0 2 5 chain 6704 chr6 171115067 + 69375066 69375137 U3 216 - 145 216 179652 71 chain 98036 chr6 171115067 + 69379979 69381606 L1MA1 4479 - 289 1875 37268 18 24 12 8 0 1 9 1 0 35 2 0 25 9 8 49 1 0 20 1 6 43 1 0 5 3 0 5 11 10 77 1 0 6 34 31 56 17 14 13 2 0 25 0 11 35 1 0 155 1 0 96 1 0 4 0 1 23 4 0 47 1 2 28 13 8 41 5 0 12 1 0 76 2 0 18 13 14 8 1 0 154 7 5 18 1 0 92 1 0 43 1 0 19 1 0 17 18 16 103 1 0 64 chain 25728 chr6 171115067 + 69410582 69410865 L1PA5 6144 + 5853 6136 101176 283 chain 4139 chr6 171115067 + 69416450 69416497 MIR 256 + 54 101 205367 47 chain 56437 chr6 171115067 + 69430881 69431515 L1PA5 6144 + 5497 6131 54884 634 chain 17888 chr6 171115067 + 69432134 69432375 L1PA7 6471 + 6227 6464 133140 80 7 0 5 6 10 125 1 0 17 chain 53575 chr6 171115067 + 69454139 69454787 L1PA7 6471 + 5819 6465 56626 29 0 1 610 3 0 6 chain 26300 chr6 171115067 + 69457704 69458048 THE1A 353 - 0 344 98829 90 1 0 91 1 2 60 1 0 42 1 0 5 1 3 51 chain 95192 chr6 171115067 + 69458057 69459204 THE1A-int 1579 - 0 1148 38036 1073 0 1 74 chain 7732 chr6 171115067 + 69459204 69459300 MLT2A1 477 + 306 398 172233 79 4 0 13 chain 199377 chr6 171115067 + 69477186 69479577 L1PA7 6471 + 4062 6457 19254 469 0 1 174 0 1 123 1 0 317 0 1 56 1 0 420 3 6 73 1 0 435 0 1 318 chain 82925 chr6 171115067 + 69491865 69492787 L1PA4 6152 - 1 921 42366 259 1 0 598 1 0 63 chain 440472 chr6 171115067 + 69495050 69499999 L1PA4 6152 - 1 4958 9044 843 0 4 1027 0 1 1541 0 1 1038 0 2 500 chain 5179 chr6 171115067 + 69500000 69500060 L1P1 4361 - 3174 3234 193228 60 chain 55652 chr6 171115067 + 69500102 69500806 L1P1 4361 + 378 1106 55337 14 0 1 56 18 12 13 8 38 62 10 9 523 chain 18273 chr6 171115067 + 69508360 69508572 L1PA7 6471 + 6245 6457 132145 212 chain 25207 chr6 171115067 + 69522568 69522860 L1PA7 6471 - 1 293 103700 292 chain 27589 chr6 171115067 + 69522891 69523245 THE1A 353 + 0 353 94382 110 1 0 243 chain 95429 chr6 171115067 + 69523467 69524530 L1PA4 6152 - 18 1090 37979 856 0 9 207 chain 45117 chr6 171115067 + 69524530 69525044 L1P1 4361 + 3634 4147 62615 396 1 0 117 chain 3823 chr6 171115067 + 69555188 69555240 MLT1C 463 + 219 268 210037 5 3 0 44 chain 123241 chr6 171115067 + 69555712 69557276 THE1A-int 1579 + 0 1579 29963 471 0 4 23 1 0 89 1 3 33 0 1 293 1 2 158 0 7 184 16 17 294 chain 25002 chr6 171115067 + 69557280 69557630 THE1A 353 + 4 353 104769 99 11 10 84 0 2 6 2 0 29 6 5 52 0 1 61 chain 14674 chr6 171115067 + 69569428 69569694 THE1B 368 - 100 368 142348 19 68 71 9 1 0 169 chain 24161 chr6 171115067 + 69571187 69571464 AluYc 301 + 4 282 109421 117 0 1 160 chain 10877 chr6 171115067 + 69593006 69593679 LTR12D 1347 + 615 1153 156674 17 2 43 19 111 17 60 277 231 18 19 16 13 4 3 30 1 0 24 49 19 8 1 0 20 chain 35413 chr6 171115067 + 69609184 69609579 L1PA2 6032 - 2 397 75665 395 chain 112779 chr6 171115067 + 69619683 69620945 L1PA4 6152 - 383 1648 33450 88 0 2 613 0 1 561 chain 31970 chr6 171115067 + 69620945 69621309 L1PA4 6152 + 5774 6141 80903 24 0 2 33 0 1 307 chain 35160 chr6 171115067 + 69622262 69622653 L1PA3long 6157 - 0 391 75973 391 chain 161813 chr6 171115067 + 69622653 69624575 L1P1 4361 + 185 2120 23090 305 0 17 67 1 0 63 18 20 35 7 0 165 0 2 1261 chain 10583 chr6 171115067 + 69649121 69649249 MER85 139 - 0 138 157901 35 0 10 93 chain 7612 chr6 171115067 + 69662463 69662549 L1PA5 6144 + 6056 6142 173463 86 chain 21422 chr6 171115067 + 69714314 69714557 L1PA5 6144 - 7 250 122437 243 chain 3011 chr6 171115067 + 69714557 69714592 MLT1B 390 - 229 264 224800 35 chain 16650 chr6 171115067 + 69721147 69721356 L1PA16 3655 + 3369 3578 136530 209 chain 73792 chr6 171115067 + 69739733 69740661 L1PA7 6471 + 5593 6462 46624 28 1 0 81 62 7 399 1 0 205 1 0 20 1 0 129 chain 41341 chr6 171115067 + 69813928 69814382 L1PA2 6032 - 1 455 67481 454 chain 42772 chr6 171115067 + 69824196 69824705 L1PA7 6471 - 796 1302 65687 54 1 0 214 1 0 122 1 0 116 chain 66296 chr6 171115067 + 69824706 69825496 L1PA7 6471 + 5679 6468 49955 625 13 12 152 chain 115979 chr6 171115067 + 69830897 69832342 SVA_A 1864 - 0 1846 32466 588 0 185 4 1 0 32 0 1 4 1 0 64 3 0 34 18 163 19 1 0 7 1 0 35 3 1 39 3 0 191 4 1 5 0 85 388 chain 148343 chr6 171115067 + 69841523 69843309 L1PA7 6471 - 5 1793 24837 10 1 0 624 0 2 209 1 0 671 0 1 37 4 5 229 chain 21869 chr6 171115067 + 69843309 69843570 L1P3 4156 + 3754 4015 120754 261 chain 13455 chr6 171115067 + 69850247 69850694 L1MA3 4352 + 3950 4352 146500 134 172 136 40 58 53 13 8 4 22 chain 23222 chr6 171115067 + 69863624 69863893 AluY 311 + 21 291 114583 111 0 1 158 chain 3521 chr6 171115067 + 69915860 69915930 MLT2A1 477 - 0 57 215051 37 4 3 9 12 0 8 chain 265672 chr6 171115067 + 69916354 69919945 HERVL-int 5654 - 0 5654 15407 217 4 3 4 0 1 15 4 42 91 0 3 48 8 7 62 0 4 216 0 14 22 0 3 86 1 0 69 0 1 7 238 1 124 1 0 236 0 24 81 1 2 95 4 5 1666 0 2218 67 11 8 10 4 3 199 chain 20138 chr6 171115067 + 69917208 69917446 HERVL-int 5654 - 2587 2825 123668 238 chain 3976 chr6 171115067 + 69924655 69924701 MADE1 96 - 50 96 207747 46 chain 254315 chr6 171115067 + 69964604 69967408 L1PA3long 6157 - 0 2814 16014 14 0 3 779 0 5 37 0 1 1373 0 1 601 chain 8505 chr6 171115067 + 69972557 69972711 MER44A 345 + 90 242 168266 11 5 1 13 1 0 38 11 13 5 2 0 10 0 3 58 chain 34143 chr6 171115067 + 69997944 69998325 L1PA7 6471 - 4 385 77422 381 chain 64974 chr6 171115067 + 70050510 70051305 L1PA7 6471 - 2 797 50584 158 2 3 176 15 14 444 chain 26112 chr6 171115067 + 70053077 70053356 L1PA2 6032 - 2 281 99567 279 chain 168615 chr6 171115067 + 70055190 70057250 L1PA7 6471 + 4005 6461 22210 183 3 0 544 0 10 129 7 15 254 8 390 87 1 4 339 1 0 25 9 5 146 0 1 324 chain 32262 chr6 171115067 + 70077222 70077574 L1PA2 6032 - 469 821 80420 352 chain 43121 chr6 171115067 + 70077574 70078049 L1PA2 6032 + 5556 6029 65268 464 2 0 9 chain 64975 chr6 171115067 + 70121883 70122598 L1PA3long 6157 - 922 1637 50583 715 chain 80839 chr6 171115067 + 70122611 70123509 L1PA3long 6157 + 5258 6157 43253 843 0 1 55 chain 146186 chr6 171115067 + 70124285 70126418 L1PB1 5432 + 3279 5376 25135 374 8 9 70 1 0 54 1 0 425 0 1 210 9 10 176 15 13 110 0 1 72 1 0 8 0 2 10 0 12 87 10 11 169 0 3 12 23 0 20 1 0 4 3 2 12 26 20 44 2 1 15 1 0 43 6 5 12 2 0 6 24 13 11 2 0 6 1 0 14 2 0 24 1 0 6 chain 143348 chr6 171115067 + 70141683 70143944 SVA_A 1864 - 3 1837 25588 691 3 0 25 1 0 11 3 0 102 34 0 44 7 5 33 2 0 18 498 45 161 3 74 625 chain 2108 chr6 171115067 + 70142519 70142545 SVA_A 1864 - 869 895 151868 26 chain 3164 chr6 171115067 + 70142804 70142841 SVA_F 1814 - 1361 1398 221685 37 chain 539685 chr6 171115067 + 70149431 70155460 L1PA2 6032 - 0 6032 2866 155 1 0 559 2 0 132 0 4 836 0 1 98 0 1 480 0 2 873 1 0 2635 2 1 255 chain 52360 chr6 171115067 + 70161553 70162251 LTR30 714 + 11 713 57390 204 23 29 96 3 0 109 8 9 255 chain 23638 chr6 171115067 + 70164305 70164757 L1PA15 4387 + 3917 4352 112373 15 1 0 48 5 5 25 16 15 30 7 11 38 2 1 17 1 0 6 1 0 55 1 0 24 4 0 9 2 1 48 8 5 44 3 1 14 5 0 23 chain 853 chr6 171115067 + 70177850 70178057 LTR12C 1709 + 652 818 115561 41 41 0 125 chain 299938 chr6 171115067 + 70178619 70182153 HERV9-int 5642 + 0 3553 13428 391 0 1 112 0 3 16 0 8 264 1 0 115 4 0 68 1 0 129 4 0 136 0 2 413 0 2 512 3 4 146 0 12 1219 chain 1134 chr6 171115067 + 70183158 70183433 LTR12C 1709 + 1315 1707 115561 97 6 7 34 10 127 46 1 0 81 chain 537216 chr6 171115067 + 70190099 70196235 L1PA4 6152 + 2 6143 3284 534 4 0 913 0 1 387 3 8 691 3 0 87 11 17 3503 chain 2826 chr6 171115067 + 70198432 70198464 Charlie4a 502 + 347 379 228294 32 chain 544461 chr6 171115067 + 70205254 70211277 L1PA2 6032 + 0 6032 2148 697 0 7 268 0 1 1040 0 1 3263 2 0 129 0 2 458 1 6 5 5 0 155 chain 551942 chr6 171115067 + 70225042 70231061 L1PA2 6032 + 12 6029 1198 6007 2 0 10 chain 40846 chr6 171115067 + 70247677 70248407 L1PB1 5432 - 8 699 68102 4 1 0 16 1 0 12 1 0 24 3 11 13 2 0 12 51 36 16 2 1 38 12 11 9 2 1 53 2 0 9 16 11 13 1 0 22 34 18 361 chain 5410 chr6 171115067 + 70249853 70249968 MER67C 710 - 0 114 190895 47 5 7 18 2 0 6 18 17 19 chain 57676 chr6 171115067 + 70266197 70266820 L1PA2 6032 - 357 980 54149 623 chain 31548 chr6 171115067 + 70266820 70267166 L1PA2 6032 + 5681 6027 81567 346 chain 530015 chr6 171115067 + 70270059 70276532 L1PA7 6471 + 0 6466 4185 168 5 26 216 24 0 537 1 0 31 5 16 884 0 2 385 1 0 367 6 0 376 5 4 178 0 4 290 5 2 81 0 1 364 5 7 726 0 4 183 0 1 72 1 2 28 1 0 6 0 1 140 22 0 256 0 3 256 8 7 307 0 1 127 0 1 6 12 13 58 2 1 328 chain 40200 chr6 171115067 + 70280754 70281311 MLT2A2 560 + 0 560 69028 168 43 42 91 0 2 13 0 1 176 1 2 65 chain 4295 chr6 171115067 + 70299637 70299724 MER58A 224 - 88 167 203310 8 19 0 27 5 16 28 chain 2953 chr6 171115067 + 70305976 70306009 MLT1E3 631 - 0 33 226035 33 chain 14272 chr6 171115067 + 70316943 70317152 L1PA8 5853 + 5647 5853 143644 26 7 6 63 1 0 18 2 1 92 chain 12964 chr6 171115067 + 70357202 70357421 Tigger3a 397 - 60 339 148376 65 0 1 4 0 5 13 10 15 91 19 68 17 chain 3607 chr6 171115067 + 70358472 70358557 L2a 937 + 292 383 213517 35 33 39 17 chain 21506 chr6 171115067 + 70361658 70362146 MER87B 500 + 0 480 122123 137 6 7 18 7 8 72 29 29 17 8 9 11 61 51 17 41 40 64 chain 48930 chr6 171115067 + 70367968 70368680 L1PA14 3548 + 91 788 59791 57 8 0 69 1 0 20 2 1 30 11 9 20 7 5 152 7 8 199 6 1 53 1 4 69 chain 33108 chr6 171115067 + 70368680 70369113 MLT2A1 477 - 0 477 79041 49 9 43 216 5 2 110 0 13 44 chain 4557 chr6 171115067 + 70381242 70381433 Tigger4a 237 + 162 237 200144 14 123 0 11 0 7 43 chain 8308 chr6 171115067 + 70405357 70405521 MER2 342 - 23 207 169351 17 10 11 39 28 42 64 0 5 6 chain 3690 chr6 171115067 + 70430509 70430553 Tigger4a 237 + 4 48 212092 44 chain 5967 chr6 171115067 + 70434389 70434466 L1MA2 4263 - 2137 2213 185532 25 1 0 51 chain 4663 chr6 171115067 + 70441136 70441207 L1MA4 2864 + 2740 2809 198923 20 8 6 43 chain 29264 chr6 171115067 + 70455141 70455449 AluYb8 318 - 10 318 87724 308 chain 19965 chr6 171115067 + 70463619 70463845 AluY 311 + 69 297 127253 198 0 2 28 chain 69794 chr6 171115067 + 70464610 70465483 L1PA8 5853 + 4969 5847 48473 38 0 2 34 0 4 68 0 1 53 5 11 384 1 0 29 1 0 14 3 1 70 2 1 9 1 0 56 1 0 16 1 0 87 chain 3247 chr6 171115067 + 70473303 70473337 MLT1A-int 1186 + 494 528 220073 34 chain 7326 chr6 171115067 + 70474046 70474144 MLT1A 405 + 20 119 175258 34 1 2 63 chain 5833 chr6 171115067 + 70498018 70498084 L1PA5 6144 - 4 70 186836 66 chain 3315 chr6 171115067 + 70503261 70503304 MER5A1 166 - 39 83 218690 21 0 1 22 chain 25976 chr6 171115067 + 70507291 70507712 LTR7B 505 + 0 497 100113 90 0 3 14 0 11 57 15 77 26 0 2 44 46 45 72 14 13 43 chain 4115 chr6 171115067 + 70508385 70508451 LTR62 707 + 0 67 205703 45 6 7 15 chain 33437 chr6 171115067 + 70508571 70508990 L1PA5 6144 - 16 436 78506 92 0 2 38 2 0 6 0 1 4 14 14 263 chain 26534 chr6 171115067 + 70516680 70517034 THE1A 353 - 0 353 97915 139 3 0 5 0 3 96 4 3 107 chain 27191 chr6 171115067 + 70518605 70518957 THE1A 353 - 2 353 95625 112 6 5 4 0 1 119 1 0 110 chain 3787 chr6 171115067 + 70552305 70552379 MIR 256 - 122 197 210557 30 20 21 24 chain 25733 chr6 171115067 + 70560733 70561019 L1PA4 6152 + 5865 6151 101154 286 chain 42404 chr6 171115067 + 70597868 70598410 MER61-int 3695 - 0 541 66143 273 0 1 55 14 12 200 chain 44183 chr6 171115067 + 70599323 70600068 LTR12D 1347 + 405 1347 63963 14 20 19 64 25 0 34 17 25 10 0 37 64 25 0 21 20 25 206 0 200 90 7 15 103 10 0 15 chain 214959 chr6 171115067 + 70600754 70604521 MER61-int 3695 - 0 3695 18167 329 22 12 76 1 0 119 1 0 4 7 5 4 0 1 236 13 12 35 1 0 93 2 1 28 4 0 111 20 19 222 0 1 4 4 3 316 6 7 110 0 2 148 19 28 278 17 17 129 1 0 17 2 1 162 820 755 12 0 1 36 0 4 49 0 1 35 2 1 225 1 0 4 5 12 7 7 0 23 chain 55837 chr6 171115067 + 70603343 70604082 MER4E 760 + 0 753 55226 22 0 2 127 22 25 78 5 7 82 0 3 12 0 17 153 12 0 82 1 0 143 chain 29909 chr6 171115067 + 70606147 70606463 AluYb8 318 + 0 316 85068 316 chain 12321 chr6 171115067 + 70627614 70627797 MER30 238 - 0 198 150933 39 3 0 70 4 22 44 1 0 7 0 1 15 chain 187569 chr6 171115067 + 70634008 70636112 L1PA5 6144 - 12 2134 20285 497 0 17 324 1 2 1282 chain 58410 chr6 171115067 + 70676029 70676679 SVA_B 1603 + 872 1603 53741 36 0 82 284 0 1 322 2 0 6 chain 51487 chr6 171115067 + 70686885 70687471 L1PA4 6152 + 5571 6150 57979 442 7 0 137 chain 12072 chr6 171115067 + 70699361 70699560 MER30 238 + 0 238 151890 11 1 0 4 0 1 6 7 25 34 13 36 6 2 0 115 chain 456296 chr6 171115067 + 70709827 70716342 L1PA8A 6298 - 28 6221 8531 82 20 14 36 0 1 563 0 1 83 3 1 86 4 5 777 0 2 228 1 3 259 0 1 255 2 0 79 0 13 83 2 0 56 11 14 25 27 15 83 1 0 89 24 11 5 2 0 181 24 22 87 0 3 42 0 1 36 0 4 22 13 20 288 1 0 130 11 7 26 0 2 15 4 5 119 0 2 463 1 0 5 0 2 12 7 6 213 0 1 12 4 3 48 0 1 64 22 27 162 281 1 212 1 2 463 7 8 6 4 0 154 20 19 13 14 26 11 71 46 70 47 41 31 2 0 8 5 0 16 45 38 17 3 0 17 1 0 12 2 1 9 4 3 16 12 12 16 4 1 23 chain 566102 chr6 171115067 + 70720239 70726271 L1HS 6032 + 0 6032 144 74 0 1 5326 1 0 631 chain 373325 chr6 171115067 + 70772289 70776493 L1PA5 6144 + 1896 6137 10979 1355 0 5 571 9 26 446 0 4 1171 0 10 485 6 7 161 chain 81624 chr6 171115067 + 70832933 70833861 L1PA3long 6157 + 5230 6156 42916 724 3 0 48 7 0 10 0 7 92 0 1 44 chain 6919 chr6 171115067 + 70833877 70833977 L1MA4 2864 + 2471 2571 178043 25 4 3 16 0 1 55 chain 23876 chr6 171115067 + 70837434 70837780 THE1B 368 - 0 357 111050 125 35 47 27 1 0 158 chain 45551 chr6 171115067 + 70863855 70864381 L1PA7 6471 - 4 530 62455 10 1 2 140 2 0 7 0 1 366 chain 44751 chr6 171115067 + 70864412 70864968 MLT2A2 560 - 0 560 63333 264 0 1 97 1 4 194 chain 24961 chr6 171115067 + 70869986 70870338 THE1D 372 - 2 372 105001 33 2 1 118 4 7 17 3 9 110 8 18 57 chain 13311 chr6 171115067 + 70880939 70881156 MER30 238 + 0 237 147045 56 4 5 46 11 27 40 3 9 12 3 0 42 chain 6812 chr6 171115067 + 70955041 70955124 MER85 139 + 33 126 178859 59 0 10 24 chain 25492 chr6 171115067 + 70977022 70977324 AluSp 311 - 9 311 102263 302 chain 3357 chr6 171115067 + 70983613 70983649 L1PA4 6152 + 6110 6146 217919 36 chain 11498 chr6 171115067 + 71021319 71021528 L1MA3 4352 + 4150 4352 154308 29 1 0 81 2 0 9 13 15 4 1 0 29 1 0 11 1 0 4 6 3 17 chain 548085 chr6 171115067 + 71027266 71033422 L1PA4 6152 + 0 6151 1698 295 3 4 161 6 0 116 1 0 492 1 2 2612 0 1 2319 1 0 149 chain 4704 chr6 171115067 + 71040034 71040219 LTR40a 516 - 5 192 198481 45 116 118 24 chain 531517 chr6 171115067 + 71040341 71046789 L1PA7 6471 - 1 6471 4019 337 1 2 319 6 5 182 1 8 368 6 5 566 1 5 239 1 0 176 2 4 73 4 0 339 0 1 4 1 0 284 0 4 88 0 5 283 0 1 476 0 1 53 1 0 10 13 8 92 0 2 351 0 1 74 0 2 312 7 8 489 8 9 124 0 2 476 2 3 276 1 0 272 0 1 130 chain 81083 chr6 171115067 + 71048619 71050269 L1PA15 4387 - 21 1330 43151 10 1 0 27 4 2 11 2 0 46 3 0 54 1 0 15 4 0 17 1 0 54 1 0 26 1 0 42 94 101 29 1 0 17 0 2 6 19 16 64 32 26 357 16 17 209 324 0 50 2 1 110 chain 138910 chr6 171115067 + 71068531 71070098 L1PA5 6144 - 1030 2599 26326 127 0 1 493 2 3 945 chain 92192 chr6 171115067 + 71070101 71071147 L1PA5 6144 + 5097 6144 38902 208 0 1 838 chain 19580 chr6 171115067 + 71085325 71085627 THE1B 368 + 41 353 128432 6 0 6 116 1 0 29 41 46 109 chain 33294 chr6 171115067 + 71087422 71087783 L1PA3long 6157 - 10 371 78737 361 chain 30417 chr6 171115067 + 71104328 71104716 MER48 407 + 0 407 83656 27 0 1 8 1 0 118 1 4 6 0 16 227 chain 24731 chr6 171115067 + 71109746 71110412 THE1B 368 - 12 368 106270 28 24 22 4 0 1 101 308 0 26 3 2 172 chain 2829 chr6 171115067 + 71140487 71140517 MLT1H-int 1039 - 730 760 228265 30 chain 41164 chr6 171115067 + 71155068 71155572 MER9a2 513 - 15 513 67693 467 1 0 10 8 2 7 0 1 11 chain 156099 chr6 171115067 + 71155572 71157474 HERVK9-int 4720 - 0 4684 23846 673 1 0 64 0 2 4 0 1 200 0 2771 47 0 1 795 1 0 30 1 0 8 3 17 49 13 9 13 chain 40971 chr6 171115067 + 71158253 71158754 MER9a2 513 - 0 513 67953 15 4 13 397 0 4 52 1 0 32 chain 157158 chr6 171115067 + 71163121 71164977 L1PA6 6164 - 2 1848 23703 56 2 1 417 0 2 146 4 3 75 0 8 139 1 0 512 22 0 281 0 1 155 0 4 46 chain 299745 chr6 171115067 + 71205342 71208984 L1PA7 6471 - 1 3809 13440 574 3 134 29 12 12 104 0 3 110 8 10 99 8 5 87 0 1 101 7 5 320 7 13 191 0 4 465 0 23 657 1 0 460 0 1 283 0 1 116 chain 4131 chr6 171115067 + 71222996 71223046 U7 62 + 0 49 205475 7 1 0 42 chain 25135 chr6 171115067 + 71238405 71238713 L1PA7 6471 - 1 322 104094 92 0 14 76 1 0 139 chain 10810 chr6 171115067 + 71241878 71242030 HSMAR2 1300 - 1141 1294 156941 120 8 9 24 chain 28844 chr6 171115067 + 71278658 71278966 AluYg6 310 - 2 310 89697 308 chain 16212 chr6 171115067 + 71288318 71288550 L1PA16 3655 - 937 1169 137714 43 1 0 134 13 14 41 chain 17633 chr6 171115067 + 71298601 71298812 AluSp 311 + 80 291 133899 211 chain 23470 chr6 171115067 + 71299676 71299957 AluSz6 309 + 18 299 113272 281 chain 4688 chr6 171115067 + 71304641 71304697 MSTC 436 + 380 436 198656 56 chain 8491 chr6 171115067 + 71313346 71313520 MSTA 426 + 0 198 168341 64 60 84 50 chain 37266 chr6 171115067 + 71326446 71326992 MLT2A2 560 + 0 560 73149 180 1 0 16 11 12 84 0 1 104 6 16 29 6 9 48 22 22 39 chain 4131 chr6 171115067 + 71337384 71337556 LTR12D 1347 - 595 760 205485 36 108 100 21 0 1 7 chain 19841 chr6 171115067 + 71338242 71338470 AluY 311 + 82 311 127677 50 0 1 178 chain 28678 chr6 171115067 + 71344660 71344980 AluYb8 318 + 0 311 90418 254 9 0 57 chain 9974 chr6 171115067 + 71369845 71369956 L1PA3long 6157 + 6046 6157 160706 111 chain 2725 chr6 171115067 + 71381512 71381546 L1MB7 1623 - 138 171 229788 6 1 0 27 chain 16851 chr6 171115067 + 71402785 71403383 L1MA3 4352 - 1469 1733 135975 49 45 0 55 5 15 37 1 13 16 312 0 5 0 1 73 chain 8195 chr6 171115067 + 71407316 71407430 L1MA3 4352 - 4195 4308 169976 74 2 1 38 chain 14199 chr6 171115067 + 71419652 71419911 Tigger3b 1229 - 12 288 143885 86 15 25 9 1 0 79 31 38 19 0 1 19 chain 8932 chr6 171115067 + 71425286 71425443 MER1A 529 - 0 137 165967 63 37 16 52 0 1 5 chain 19753 chr6 171115067 + 71425457 71425891 L1PB1 5432 - 5 421 127950 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 13 23 25 5 2 0 19 9 0 8 3 0 20 1 0 44 1 0 15 3 1 53 2 0 8 6 2 10 1 0 12 1 0 21 31 36 14 1 7 46 chain 26160 chr6 171115067 + 71429282 71429635 THE1A 353 - 0 353 99366 81 8 9 153 2 1 109 chain 122322 chr6 171115067 + 71429653 71431325 THE1A-int 1579 - 17 1577 30272 149 5 0 165 7 8 468 0 16 27 6 1 169 121 1 97 3 0 205 1 2 138 0 3 111 chain 26334 chr6 171115067 + 71431327 71431689 THE1A 353 - 0 353 98678 108 20 12 123 1 0 110 chain 39045 chr6 171115067 + 71432197 71432671 MER9a3 513 - 5 498 70672 72 2 3 156 4 21 145 0 1 95 chain 233581 chr6 171115067 + 71453881 71456553 L1PA6 6164 - 2 2678 17111 90 1 0 68 0 1 145 5 6 1448 0 1 81 0 1 368 0 1 466 chain 169663 chr6 171115067 + 71466387 71468228 L1PA2 6032 + 4183 6024 22097 1841 chain 549209 chr6 171115067 + 71475450 71481600 L1PA3long 6157 - 0 6153 1549 1698 2 0 285 1 0 389 0 1 1263 1 0 667 0 4 1284 8 9 410 0 1 142 chain 12902 chr6 171115067 + 71486915 71487054 L1HS 6032 - 5890 6029 148618 139 chain 24189 chr6 171115067 + 71487944 71488273 L1MA5 2750 - 1824 2154 109279 143 0 1 75 3 0 6 3 6 99 chain 25198 chr6 171115067 + 71489509 71489813 Charlie3 2679 + 240 544 103752 304 chain 12557 chr6 171115067 + 71492222 71492371 MLT2A1 477 + 212 361 150016 149 chain 494466 chr6 171115067 + 71492533 71498167 L1PA4 6152 + 6 6152 7141 90 0 525 230 17 0 2202 1 2 61 0 1 1052 1 0 324 0 4 83 7 8 287 2 3 1261 3 0 13 chain 33803 chr6 171115067 + 71504138 71504837 L1PA6 6164 - 8 474 77935 122 0 22 82 0 1 130 0 1 2 254 0 90 7 4 12 chain 499988 chr6 171115067 + 71510225 71516320 L1PA6 6164 - 3 6143 6842 333 1 0 340 1 0 168 0 5 949 1 9 226 0 2 622 0 4 94 3 6 85 0 1 73 0 4 26 0 1 300 0 4 172 0 1 23 0 3 56 1 0 211 0 3 115 7 1 98 6 0 11 0 2 491 6 2 42 0 1 575 16 16 14 0 1 207 11 11 29 0 17 148 1 0 226 44 45 36 6 0 6 8 14 51 1 0 4 2 3 36 0 2 38 1 2 17 1 2 156 chain 21814 chr6 171115067 + 71545834 71546158 THE1B 368 - 0 355 120963 75 1 0 96 5 7 14 1 0 6 16 42 83 1 6 26 chain 9419 chr6 171115067 + 71575147 71575284 MER2 342 + 141 293 163464 40 0 5 54 7 17 36 chain 69839 chr6 171115067 + 71579499 71580255 L1PA4 6152 + 5396 6152 48459 756 chain 5009 chr6 171115067 + 71592530 71592591 MLT1B 390 + 274 335 195033 61 chain 4573 chr6 171115067 + 71611077 71611131 L1MC3 1789 + 1143 1197 199960 54 chain 487966 chr6 171115067 + 71623839 71630244 L1PA6 6164 - 3 6149 7446 7 2 0 373 273 0 465 0 1 419 0 3 244 1 0 20 7 11 402 0 2 169 0 3 288 17 15 592 0 5 60 8 6 562 5 0 104 1 0 73 0 4 47 0 1 49 4 9 951 5 0 182 0 4 8 2 0 14 1 2 131 1 5 77 0 2 27 0 17 168 12 9 61 12 11 25 0 1 83 20 1 35 21 19 65 0 1 76 0 3 6 3 0 73 0 1 154 chain 451840 chr6 171115067 + 71634878 71641045 L1PA5 6144 + 0 6143 8703 42 8 3 91 9 23 428 0 2 121 3 4 231 28 0 131 0 3 90 9 0 1144 3 4 73 1 0 146 14 1 22 0 4 213 0 2 386 5 2 68 0 1 46 1 2 217 15 15 51 0 571 13 583 0 161 0 1 29 0 4 142 0 2 267 1 2 591 1 8 145 0 1 54 0 1 462 0 1 122 chain 48734 chr6 171115067 + 71638495 71639054 L1PA5 6144 + 5566 6138 59928 406 10 22 93 0 1 50 chain 385339 chr6 171115067 + 71645362 71649607 L1PA3long 6157 + 1899 6157 10595 1391 0 2 1712 1 6 390 0 3 503 0 1 49 0 2 199 chain 3086 chr6 171115067 + 71653528 71653677 L1MA8 2339 + 2129 2265 223162 32 83 77 19 7 0 8 chain 549552 chr6 171115067 + 71653795 71659917 L1PA3long 6157 + 6 6157 1509 335 8 22 32 0 2 20 11 0 1101 0 1 676 15 7 1089 0 1 491 7 8 971 0 22 220 1 6 296 0 1 56 0 1 793 chain 22278 chr6 171115067 + 71682285 71682623 THE1B 368 + 0 353 119003 44 0 15 113 28 27 122 6 7 25 chain 512734 chr6 171115067 + 71683906 71689998 L1PA6 6164 + 29 6160 5901 387 0 1 37 7 11 115 2 17 1615 0 2 117 0 3 476 4 5 356 1 0 19 0 2 1315 0 4 83 7 8 363 0 1 68 2 9 969 1 2 140 2 0 6 chain 12697 chr6 171115067 + 71696598 71696802 THE1B 368 + 155 368 149456 14 1 0 29 35 45 125 chain 521835 chr6 171115067 + 71707404 71713857 L1PA7 6471 + 5 6469 4979 238 0 1 8 0 7 146 1 0 7 1 0 61 1 0 104 3 0 5 30 4 155 11 16 286 0 5 204 0 19 392 0 1 145 0 1 37 1 4 131 0 1 658 3 0 589 11 14 379 1 0 274 4 0 21 5 6 748 0 2 895 1 0 38 7 10 131 0 1 629 16 0 11 0 17 53 2 0 10 chain 101864 chr6 171115067 + 71735374 71736787 L1PBa1 4058 - 18 1424 36293 42 8 4 12 1 0 10 1 0 4 1 0 6 12 9 11 1 0 19 3 0 4 1 0 4 2 1 19 2 0 8 24 37 105 2 0 44 1 0 29 1 0 8 1 0 105 5 4 81 0 3 36 1 0 102 20 24 84 0 1 302 2 0 54 1 0 234 chain 19443 chr6 171115067 + 71747224 71747606 MSTA 426 - 39 426 128841 118 79 79 18 9 13 39 14 0 7 3 18 95 chain 31593 chr6 171115067 + 71751531 71751975 MER4A1 472 - 0 472 81507 41 0 2 27 9 11 143 5 26 115 0 1 80 1 0 4 0 1 5 1 3 13 chain 255741 chr6 171115067 + 71805341 71809384 L1PB2 3958 - 124 3846 15949 59 1 0 22 2 0 74 1 0 62 1 0 77 6 5 84 5 1 12 2 0 57 5 4 8 2 0 6 1 0 55 2 0 49 23 19 16 9 13 153 1 0 90 31 33 11 1 0 9 0 1 67 177 0 6 40 0 77 0 1 46 0 1 16 0 1 53 0 1 147 11 6 13 0 2 108 0 2 96 65 0 207 3 4 124 1 9 155 1 2 28 0 2 41 8 13 89 1 0 8 1 0 13 11 9 89 32 5 17 1 0 129 1 0 19 0 1 4 1 0 21 2 3 25 2 0 4 6 0 19 0 5 30 0 1 292 1 0 4 0 1 64 0 1 371 15 9 72 20 21 73 0 1 57 7 4 10 11 12 24 2 6 6 5 0 29 2 0 26 chain 5012 chr6 171115067 + 71806433 71806522 L1PB2 3958 - 1117 3128 176788 32 9 1931 48 chain 22808 chr6 171115067 + 71830389 71830679 AluSp 311 - 20 311 116537 238 5 6 47 chain 77968 chr6 171115067 + 71837816 71838662 L1PA2 6032 - 4 850 44535 846 chain 66606 chr6 171115067 + 71838662 71839383 L1PA2 6032 + 4449 5170 49825 721 chain 482345 chr6 171115067 + 71850792 71856067 L1PA2 6032 + 756 6028 7648 1068 1 0 1357 0 1 2832 3 0 14 chain 6654 chr6 171115067 + 71892314 71892392 U6 107 + 0 78 180049 78 chain 17123 chr6 171115067 + 71928902 71929127 L1PA8 5853 - 0 221 135251 93 1 0 19 2 1 52 2 1 8 1 0 47 chain 169069 chr6 171115067 + 71975115 71977144 SVA_D 2077 - 0 2077 22163 18 2 0 81 0 4 922 110 35 63 0 36 154 0 40 90 0 40 532 0 8 16 6 0 21 0 3 14 chain 7321 chr6 171115067 + 71976138 71976244 SVA_D 2077 - 898 1005 99288 62 4 5 40 chain 546560 chr6 171115067 + 71980221 71986368 L1PA4 6152 + 11 6151 1874 235 1 2 207 13 7 118 2 1 4796 1 0 774 chain 163822 chr6 171115067 + 72027403 72029233 L1PA3long 6157 + 4304 6147 22831 56 0 4 410 4 5 959 2 0 157 0 10 242 chain 85348 chr6 171115067 + 72045709 72046908 L1PA11 4918 + 3384 4567 41399 253 1 0 310 9 6 112 0 1 148 0 3 95 0 1 21 0 3 56 2 1 13 2 0 65 4 2 14 4 3 13 54 41 9 1 0 13 chain 531276 chr6 171115067 + 72065064 72071490 L1PA7 6471 - 14 6468 4046 323 1 2 22 6 15 135 2 0 260 0 2 67 3 5 545 0 1 398 0 2 8 2 0 128 1 0 193 0 3 202 5 3 144 1 3 84 29 12 318 0 2 13 1 0 37 0 1 331 1 9 544 1 4 9 5 3 107 0 2 53 0 19 89 0 5 132 7 8 946 0 1 859 20 10 336 14 15 44 chain 27700 chr6 171115067 + 72076198 72076632 LOR1b 457 + 0 428 94040 29 0 9 26 18 19 64 13 6 74 9 6 36 11 5 154 chain 9100 chr6 171115067 + 72127249 72127376 MER85 139 - 0 139 165071 22 1 0 7 3 16 94 chain 404547 chr6 171115067 + 72146353 72152499 L1PB1 5432 + 77 5391 9959 285 5 6 187 8 11 4 1 0 38 0 3 6 15 5 140 1 0 618 21 0 10 0 18 233 0 1 67 0 1 69 1 0 42 0 9 240 14 15 406 3 1 334 1 0 8 1 0 149 15 15 10 1 0 57 2 0 663 5 6 91 0 4 57 457 0 742 0 1 133 9 6 170 2 0 142 26 28 6 1 0 11 1 0 9 1 0 12 1 0 12 369 21 40 1 0 17 1 0 38 37 23 29 3 1 5 1 0 14 30 27 18 chain 34888 chr6 171115067 + 72172111 72172506 L1PA4 6152 + 5722 6122 76358 95 0 1 96 0 4 204 chain 2657 chr6 171115067 + 72172506 72172535 L1PA4 6152 + 6123 6152 230919 29 chain 5817 chr6 171115067 + 72199052 72199127 MER57B1 401 + 37 112 186981 75 chain 27388 chr6 171115067 + 72242165 72242461 AluYb8 318 + 0 292 95010 118 4 0 174 chain 4519 chr6 171115067 + 72248588 72248666 MADE1 96 + 0 96 200563 32 1 17 12 3 5 30 chain 12137 chr6 171115067 + 72248666 72248830 L1PB2 3958 + 3507 3669 151664 33 1 0 78 1 0 51 chain 113907 chr6 171115067 + 72265091 72266739 THE1C-int 1605 + 15 1593 33119 430 5 12 32 41 42 160 13 14 287 0 2 27 4 15 82 2 3 14 0 4 190 0 1 202 98 0 61 chain 89360 chr6 171115067 + 72271928 72272918 L1PA3long 6157 - 0 991 39856 671 0 1 319 chain 5773 chr6 171115067 + 72280467 72280533 L1MB1 2102 - 95 161 187408 66 chain 5027 chr6 171115067 + 72289880 72289956 MIR 256 - 150 229 194849 41 6 9 29 chain 28291 chr6 171115067 + 72326599 72326967 THE1B 368 + 0 368 91978 13 2 0 27 0 5 127 2 1 19 2 0 176 chain 27993 chr6 171115067 + 72333940 72334316 THE1C 375 + 0 375 93020 15 2 0 32 1 2 135 1 2 163 1 0 26 chain 10158 chr6 171115067 + 72340051 72340227 L1MA5 2750 - 90 261 159812 14 1 0 13 6 5 52 19 16 71 chain 28971 chr6 171115067 + 72370264 72370640 LOR1b 457 + 71 450 89128 73 1 0 289 2 6 11 chain 26341 chr6 171115067 + 72372630 72373008 THE1B 368 + 0 357 98649 172 2 1 13 12 6 126 17 3 36 chain 103265 chr6 171115067 + 72395686 72397073 LTR12C 1709 + 0 1708 35933 111 0 5 146 2 1 4 0 1 10 19 24 36 0 43 77 9 11 181 0 278 184 1 0 5 3 1 29 1 0 77 0 4 260 13 4 61 6 5 55 13 12 24 1 0 59 chain 3467 chr6 171115067 + 72404144 72404183 MIRb 242 - 132 171 215846 39 chain 30031 chr6 171115067 + 72458099 72458508 LTR7 482 - 38 482 84718 118 0 10 21 0 31 15 1 0 134 21 15 4 0 1 95 chain 283368 chr6 171115067 + 72459739 72463361 HERVH-int 3825 - 1 3825 14446 145 1 0 170 0 1 86 13 14 249 0 1 69 0 3 39 6 5 624 16 16 301 11 16 562 0 7 46 1 0 40 10 0 204 15 0 326 0 1 120 1 0 8 29 236 45 1 0 5 1 0 8 1 5 92 15 16 20 29 28 34 1 3 257 1 2 20 chain 9067 chr6 171115067 + 72463369 72463468 LTR7 482 - 5 104 165226 99 chain 50044 chr6 171115067 + 72495016 72495683 LTR12_ 688 + 0 673 58989 175 24 0 365 5 2 10 1 34 87 chain 308263 chr6 171115067 + 72495853 72499724 HERV9-int 5642 + 12 4824 13076 587 4 5 191 1 0 62 6 0 45 1 86 39 80 0 74 16 6 136 0 1 175 0 6 666 0 1 114 1 3 286 5 6 138 0 3 302 2 1 65 13 948 104 1 2 453 2 0 127 0 4 114 0 1 61 chain 50637 chr6 171115067 + 72501499 72502140 LTR12_ 688 + 0 665 58549 127 1 26 14 1 0 267 4 0 6 10 14 211 chain 376475 chr6 171115067 + 72507483 72512852 L1PB1 5432 - 144 5407 10865 7 1 0 44 1 0 16 2 1 51 2 0 11 4 0 11 1 0 13 1 0 12 25 23 46 2 1 5 0 1 340 6 9 71 4 0 84 9 12 24 0 1 5 16 15 224 1 0 4 0 13 85 0 1 108 6 11 59 0 1 6 1 0 4 1 0 78 4 6 147 138 21 347 5 6 5 0 3 151 0 2 361 2 0 185 7 11 100 0 1 13 0 1 23 1 2 6 0 2 76 0 10 336 12 16 380 27 32 6 0 1 114 12 16 13 37 0 95 15 0 86 0 1 157 0 1 48 1 13 19 0 1 19 0 1 4 2 1 51 6 9 581 1 0 9 0 1 376 chain 60947 chr6 171115067 + 72519382 72520073 L1PA4 6152 - 1 695 52362 147 0 1 280 0 1 47 0 1 217 chain 29127 chr6 171115067 + 72520073 72520398 L1PA4 6152 + 5107 5459 88421 169 0 27 156 chain 196514 chr6 171115067 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19 2 1 24 1 0 28 16 13 65 2 0 46 1 0 140 0 1 339 0 2 70 9 7 119 0 1 78 7 8 129 chain 51161 chr6 171115067 + 72799326 72799882 L1PA2 6032 + 5473 6028 58211 223 1 0 332 chain 198739 chr6 171115067 + 72818405 72820613 L1PA3long 6157 - 0 2214 19301 2185 6 10 9 0 2 8 chain 503646 chr6 171115067 + 72829372 72835825 L1PA5 6144 - 14 6144 6624 109 5 6 18 1 0 38 1 0 4 0 1 666 1 2 38 0 1 276 0 1 27 2 1 376 5 6 840 6 5 40 1 0 62 321 0 390 0 4 158 0 1 1391 4 0 500 13 4 220 25 0 122 0 17 384 3 2 206 1 0 80 7 21 36 1 2 75 chain 82680 chr6 171115067 + 72841053 72842105 MER11C 1089 - 26 1089 42471 325 0 1 35 1 0 10 0 4 109 46 47 211 0 4 58 8 9 170 0 1 79 chain 19058 chr6 171115067 + 72854719 72855035 MER41-int 2638 - 601 906 129949 21 57 46 65 1 0 53 0 1 72 1 0 16 0 1 30 chain 23532 chr6 171115067 + 72864823 72865166 THE1B-int 1605 - 917 1585 112952 10 0 3 91 4 71 62 10 35 76 0 230 90 chain 528558 chr6 171115067 + 72868127 72874236 L1PA4 6152 - 14 6146 4350 325 0 1 70 0 1 98 0 8 107 0 2 244 0 4 127 0 5 716 1 6 135 0 2 405 0 1 365 3 0 339 1 0 634 0 1 1108 1 0 25 0 4 342 1 3 324 8 0 730 chain 330327 chr6 171115067 + 72897962 72902465 HERVL-int 5654 - 0 4197 12191 6 0 1 29 0 3 87 0 1 162 5 12 67 0 3 96 0 1 231 1 11 41 1 4 15 5 6 912 0 2 162 0 1 100 342 0 129 1 0 4 0 1 71 0 1 64 0 4 72 0 3 50 1 0 276 0 1 85 6 5 26 4 0 471 3 0 517 0 3 5 5 0 258 0 4 159 0 1 34 chain 24497 chr6 171115067 + 72995628 72995915 AluSp 311 + 10 297 107555 287 chain 5176 chr6 171115067 + 73011150 73011290 MER2 342 + 13 150 193273 14 59 57 25 1 0 41 chain 38794 chr6 171115067 + 73037682 73038159 L1PA7 6471 + 5983 6469 71024 152 7 9 125 0 8 91 1 0 101 chain 25799 chr6 171115067 + 73042110 73042387 L1PA3long 6157 + 5869 6146 100880 277 chain 69721 chr6 171115067 + 73044765 73045696 L1PA7 6471 - 2 921 48511 10 2 0 94 4 5 21 20 1 187 3 8 58 7 9 373 1 0 19 1 0 44 0 1 4 1 0 13 4 7 65 chain 69451 chr6 171115067 + 73047305 73048072 L1PA4 6152 - 11 778 48632 767 chain 30116 chr6 171115067 + 73048072 73048410 L1PA4 6152 + 5040 5382 84429 264 0 4 74 chain 181222 chr6 171115067 + 73048998 73051005 L1PA4 6152 - 11 2021 20878 243 1 0 674 0 1 397 2 4 550 0 1 140 chain 37273 chr6 171115067 + 73089668 73090099 L1PA6 6164 + 5723 6155 73127 93 0 1 338 chain 28339 chr6 171115067 + 73114824 73115281 MER1A 529 + 0 520 91800 80 9 65 20 3 4 166 1 2 55 1 4 47 44 0 8 0 46 23 chain 56437 chr6 171115067 + 73135880 73136557 L1PA5 6144 - 3 677 54885 13 3 0 121 17 17 523 chain 284021 chr6 171115067 + 73136573 73139822 L1PA4 6152 - 9 3444 14414 147 1 0 337 0 186 801 8 7 685 0 1 155 0 1 313 0 2 701 2 0 99 chain 555995 chr6 171115067 + 73179134 73185286 L1PA3long 6157 + 0 6157 727 1813 0 1 277 0 1 92 0 2 1283 1 0 475 0 1 1361 0 1 850 chain 54044 chr6 171115067 + 73201105 73201703 L1PA4 6152 - 1517 2115 56332 598 chain 64522 chr6 171115067 + 73201703 73202427 L1PA4 6152 - 2119 2842 50787 94 0 1 117 2 0 511 chain 134047 chr6 171115067 + 73202427 73203929 L1PA4 6152 + 4643 6146 27194 657 0 1 845 chain 4486 chr6 171115067 + 73204054 73204104 L1P 111 + 14 64 200957 50 chain 5806 chr6 171115067 + 73216374 73216442 THE1D 372 - 2 70 187086 68 chain 558158 chr6 171115067 + 73279837 73285867 L1PA2 6032 + 2 6032 486 6030 chain 200591 chr6 171115067 + 73290927 73293292 L1PA7 6471 - 6 2384 19167 712 0 1 128 0 3 45 0 1 292 0 1 5 1 0 150 0 8 540 0 1 104 1 0 387 chain 17065 chr6 171115067 + 73302574 73302798 L1PA8A 6298 - 7 238 135414 110 8 15 106 chain 42710 chr6 171115067 + 73343112 73343787 L1PA16 3655 + 2083 2767 65763 126 5 6 109 6 8 13 3 0 5 5 13 73 13 16 13 41 40 157 15 14 91 chain 19451 chr6 171115067 + 73372759 73373014 L1PA7 6471 + 6204 6465 128816 156 1 9 83 0 1 6 3 0 6 chain 47719 chr6 171115067 + 73388928 73389457 L1PA3long 6157 + 5628 6157 60676 529 chain 28640 chr6 171115067 + 73446221 73446521 AluYa5 310 - 10 310 90561 300 chain 43767 chr6 171115067 + 73482791 73483318 L1PA7 6471 + 5910 6453 64490 51 14 1 238 0 29 224 chain 201585 chr6 171115067 + 73509893 73512116 L1P1 4361 - 758 2985 19100 116 0 4 2107 chain 54504 chr6 171115067 + 73518522 73519125 L1PA3long 6157 + 5555 6157 56023 269 1 0 333 chain 158684 chr6 171115067 + 73539652 73541463 L1PA5 6144 + 4328 6143 23507 690 1 0 150 1 2 127 0 4 82 1 0 43 0 3 703 3 1 10 chain 15401 chr6 171115067 + 73547677 73547851 L1PA4 6152 - 0 174 140196 174 chain 87594 chr6 171115067 + 73552301 73553338 L1PA7 6471 - 592 1632 40536 252 9 8 125 0 1 17 0 3 634 chain 45029 chr6 171115067 + 73553345 73553896 L1PA7 6471 + 5888 6470 63020 125 0 7 108 0 1 27 0 1 43 0 29 195 7 0 46 chain 20546 chr6 171115067 + 73558945 73559199 L1PB4 2604 - 288 542 125484 254 chain 19604 chr6 171115067 + 73562031 73562325 L1MA4 2864 + 2395 2683 128371 76 12 10 16 3 2 21 1 2 114 2 1 38 3 0 8 chain 6532 chr6 171115067 + 73571492 73571562 L1PA2 6032 + 5961 6031 180984 70 chain 61220 chr6 171115067 + 73586783 73587573 L1PA8 5853 - 0 785 52245 92 2 1 19 2 1 44 4 3 14 1 0 71 2 0 36 9 8 90 2 1 332 0 3 70 chain 25330 chr6 171115067 + 73596862 73597213 THE1B 368 - 0 368 103071 46 8 16 131 1 0 7 1 0 86 3 14 68 chain 71316 chr6 171115067 + 73607889 73608879 L1PA8 5853 - 0 978 47785 93 7 6 13 2 1 42 3 0 11 3 0 8 4 3 66 2 0 46 1 0 72 0 2 7 2 0 9 0 1 286 20 18 31 0 1 127 2 0 108 0 2 25 chain 391461 chr6 171115067 + 73609866 73615508 L1PB1 5432 - 156 5358 10409 39 1 0 16 2 1 53 2 0 9 4 0 8 4 3 11 1 0 13 0 6 12 210 2 14 5 6 196 0 1 71 9 0 8 0 11 55 1 2 85 206 0 24 0 2 129 15 19 118 0 1 4 1 0 248 0 1 267 12 16 7 4 0 75 9 17 423 0 2 6 6 4 36 0 1 321 9 13 28 1 4 47 0 1 347 0 1 421 0 1 412 33 10 44 0 1 4 1 0 7 6 8 181 7 0 128 1 2 42 1 3 211 9 1 407 0 1 157 0 1 49 2 0 225 8 21 27 40 7 47 chain 14443 chr6 171115067 + 73610704 73610901 L1PA5 6144 - 3 193 143069 157 0 1 4 15 7 21 chain 27006 chr6 171115067 + 73671057 73671367 AluY 311 + 0 305 96263 50 1 0 73 7 3 179 chain 128080 chr6 171115067 + 73680270 73681709 L1PA5 6144 + 4682 6132 28549 187 1 0 428 0 4 456 0 8 367 chain 25355 chr6 171115067 + 73682120 73682408 L1PA8A 6298 - 10 298 102922 288 chain 525340 chr6 171115067 + 73688406 73694568 L1PA6 6164 - 3 6164 4649 486 0 1 113 0 2 244 1 0 145 0 1 496 1 0 225 0 1 77 0 2 49 0 1 350 0 14 179 0 1 41 7 8 415 0 1 336 0 4 381 0 1 184 5 0 69 13 0 207 0 1 81 0 2 1174 15 1 358 2 1 17 0 1 491 chain 8793 chr6 171115067 + 73697520 73697649 MER85 139 - 0 139 166687 16 11 16 6 0 5 96 chain 567446 chr6 171115067 + 73698377 73704409 L1HS 6032 - 0 6032 60 6032 chain 62100 chr6 171115067 + 73766509 73767213 L1PA5 6144 + 5442 6144 51853 554 2 0 148 chain 26047 chr6 171115067 + 73767853 73768146 AluYf4 310 + 0 293 99840 293 chain 50844 chr6 171115067 + 73768146 73768998 L1PA15 4387 + 3549 4358 58400 54 2 0 22 6 9 36 18 0 143 9 7 7 5 0 47 0 1 15 2 0 41 2 1 172 2 1 20 6 5 48 8 7 22 4 0 9 1 0 40 20 17 32 1 2 6 2 0 16 5 0 29 chain 403075 chr6 171115067 + 73799156 73805521 L1PB1 5432 - 12 5347 9997 19 1 0 10 1 0 10 12 11 24 2 0 14 1 0 4 3 1 30 35 21 38 1 0 17 2 1 53 17 11 9 1 0 10 1 0 22 5 0 12 1 0 166 0 3 229 5 7 77 8 5 385 855 0 159 1 6 37 75 6 289 46 0 27 0 1 4 1 0 385 58 26 337 15 19 150 1 2 241 0 2 45 4 0 467 3 6 300 0 1 43 0 1 3 0 5 76 0 2 5 2 0 183 1 0 6 14 0 651 21 22 214 0 1 143 3 4 228 0 2 47 chain 67200 chr6 171115067 + 73800396 73801200 L1PA7 6471 + 5661 6465 49563 804 chain 87693 chr6 171115067 + 73808804 73810098 L1MA3 4352 + 22 1280 40492 15 1 0 44 1 0 16 3 0 52 7 6 20 5 0 113 38 19 465 2 0 13 9 6 35 10 0 38 1 0 11 1 0 182 2 0 23 2 1 27 5 4 46 16 25 40 0 3 44 0 3 7 chain 33577 chr6 171115067 + 73812980 73813369 L1PA5 6144 + 5756 6143 78276 379 2 0 8 chain 20151 chr6 171115067 + 73896520 73896767 L1PA6 6164 - 3 250 126670 247 chain 114712 chr6 171115067 + 73914834 73916101 SVA_C 1631 - 0 1610 32878 508 4 0 12 0 336 513 0 11 230 chain 9591 chr6 171115067 + 73941388 73941500 AluSc5 308 + 195 307 162637 112 chain 44205 chr6 171115067 + 73944919 73945509 L1PA8 5853 - 0 587 63939 53 0 1 30 7 6 22 12 11 51 1 0 71 2 0 8 0 2 28 9 8 296 chain 113062 chr6 171115067 + 73977770 73979159 LTR12C 1709 - 0 1709 33359 50 0 1 148 2 0 169 0 1 112 3 7 18 1 0 85 8 324 298 8 9 62 1 0 164 1 2 259 chain 14845 chr6 171115067 + 73984149 73984463 THE1D 372 + 2 333 141793 49 3 0 6 31 32 39 1 0 5 1 6 27 57 72 95 chain 14059 chr6 171115067 + 73995375 73995525 L1HS 6032 - 0 150 144351 150 chain 29403 chr6 171115067 + 73999541 73999850 AluYb9 318 + 0 309 87054 309 chain 7964 chr6 171115067 + 74012066 74012228 Tigger3c 601 - 40 169 171264 8 32 0 90 13 12 19 chain 201570 chr6 171115067 + 74020230 74022506 L1PA5 6144 - 1811 4094 19101 136 0 2 321 2 1 370 0 1 274 0 4 65 0 1 1108 chain 160064 chr6 171115067 + 74022506 74024305 L1PA5 6144 + 4341 6144 23303 6 0 4 1540 1 0 23 0 2 66 1 0 162 chain 6268 chr6 171115067 + 74025903 74026015 MER3 215 + 57 164 183012 52 15 16 27 6 0 12 chain 7529 chr6 171115067 + 74028992 74029125 L1MC3 1789 + 810 933 173980 70 31 21 32 chain 21085 chr6 171115067 + 74099343 74099579 L1PA4 6152 + 5917 6151 123595 93 1 0 136 1 0 5 chain 26405 chr6 171115067 + 74152958 74153259 AluSg7 307 - 5 306 98392 301 chain 29678 chr6 171115067 + 74156166 74156487 AluYb8 318 + 0 318 85909 132 3 0 186 chain 23556 chr6 171115067 + 74159858 74160152 AluSp 311 + 1 296 112816 137 12 13 145 chain 7105 chr6 171115067 + 74165619 74165922 L1MB3 1562 - 62 358 176718 14 19 20 28 170 162 72 chain 72177 chr6 171115067 + 74169117 74169971 MER11D 897 + 0 897 47390 14 0 1 159 0 17 311 1 3 88 1 24 280 chain 19454 chr6 171115067 + 74171028 74171257 AluY 311 + 52 283 128805 80 0 1 44 0 1 105 chain 3299 chr6 171115067 + 74196491 74196531 L1MB2 1706 - 224 264 218979 40 chain 21119 chr6 171115067 + 74197289 74197578 7SLRNA 320 - 3 298 123489 6 5 0 69 1 0 31 3 15 174 chain 108853 chr6 171115067 + 74199004 74200345 L1PA5 6144 - 0 1427 34474 9 5 0 9 1 0 458 9 5 79 0 1 561 1 0 110 46 141 40 0 1 13 chain 22452 chr6 171115067 + 74206211 74206460 L1PA3long 6157 - 2 255 118239 117 0 4 132 chain 5214 chr6 171115067 + 74215573 74215647 L1MB3 1562 + 1441 1513 192881 9 1 0 18 1 0 45 chain 3773 chr6 171115067 + 74244543 74244598 L1ME1 1623 + 1242 1296 210763 22 2 1 31 chain 29447 chr6 171115067 + 74263892 74264202 AluYa5 310 - 0 310 86864 310 chain 129769 chr6 171115067 + 74281266 74282822 LTR12C 1709 - 0 1709 28138 84 5 4 222 6 5 106 7 6 54 0 4 106 4 161 120 1 0 258 8 4 575 chain 83189 chr6 171115067 + 74285292 74286374 MER11B 1079 + 0 1079 42256 195 1 0 54 0 1 14 3 0 46 0 4 45 0 1 200 40 39 69 1 0 65 0 1 38 8 2 279 5 6 15 0 1 4 chain 3143 chr6 171115067 + 74291456 74291490 MER66C 541 + 375 409 222117 34 chain 23209 chr6 171115067 + 74308433 74308726 AluSp 311 + 0 299 114646 69 6 14 210 2 0 6 chain 40105 chr6 171115067 + 74310674 74311129 SVA_F 1814 + 380 875 69172 389 0 40 66 chain 83222 chr6 171115067 + 74311204 74312172 SVA_D 2077 + 1058 2073 42242 153 51 0 92 0 98 672 chain 3779 chr6 171115067 + 74311357 74311408 SVA_D 2077 + 1033 1084 77842 51 chain 25841 chr6 171115067 + 74357517 74357813 AluSq10 312 + 9 304 100698 72 1 0 223 chain 6046 chr6 171115067 + 74368307 74368472 MER33 330 - 13 191 184840 13 10 18 43 56 60 29 0 1 14 chain 166728 chr6 171115067 + 74369587 74371468 SVA_D 2077 - 21 2077 22428 652 0 49 20 0 78 219 0 2 49 1 0 26 0 1 10 12 54 687 1 0 178 1 6 25 chain 5828 chr6 171115067 + 74382421 74382494 L1MC2 1988 - 376 450 186874 48 0 1 25 chain 10505 chr6 171115067 + 74391146 74391327 THE1B 368 - 0 196 158229 35 5 6 15 24 39 97 1 0 4 chain 118971 chr6 171115067 + 74391796 74393357 THE1B-int 1605 - 0 1605 31427 9 0 1 19 0 10 491 1 2 62 1 0 6 0 1 11 9 5 90 0 9 68 0 1 56 9 0 7 4 13 280 11 36 401 2 3 24 chain 29306 chr6 171115067 + 74393357 74393728 THE1B 368 - 0 368 87539 176 2 0 9 1 0 4 0 1 5 2 1 172 chain 3035 chr6 171115067 + 74393870 74393905 L1MA9 1812 - 196 231 224287 35 chain 4493 chr6 171115067 + 74396721 74396814 MER3 215 - 109 211 200862 20 28 37 45 chain 6143 chr6 171115067 + 74398123 74398449 MER21C 908 + 86 400 184054 42 59 13 32 130 141 18 27 50 18 chain 25360 chr6 171115067 + 74400121 74400421 AluSp 311 - 14 310 102885 8 5 0 251 0 1 36 chain 141840 chr6 171115067 + 74417736 74419329 L1PA5 6144 - 13 1605 25850 844 1 0 748 chain 83065 chr6 171115067 + 74419329 74420243 L1PA5 6144 + 3646 4560 42234 914 chain 28103 chr6 171115067 + 74421257 74421559 AluYa5 310 - 12 310 92637 166 4 0 132 chain 136767 chr6 171115067 + 74425798 74428289 L1MA2 4263 - 150 2149 26686 8 1 0 44 8 1 90 16 14 148 3 0 148 3 0 60 1 0 4 0 1 10 4 1 79 1 2 21 1 3 244 0 1 164 1 2 85 24 25 46 0 2 135 1 0 73 5 0 54 6 4 45 572 100 249 6 5 46 0 2 5 6 4 74 chain 7209 chr6 171115067 + 74433820 74433941 MER96B 391 + 266 383 176007 21 1 0 7 1 0 21 0 1 21 1 0 22 6 4 20 chain 28653 chr6 171115067 + 74469848 74470155 AluYk11 308 + 0 307 90514 307 chain 46965 chr6 171115067 + 74487518 74488205 L1PA13 3608 - 120 802 61236 22 1 0 16 3 1 6 2 0 46 4 2 4 1 0 54 1 4 60 2 0 50 0 1 62 1 0 25 0 1 5 1 0 42 7 8 32 12 25 129 12 0 87 chain 68576 chr6 171115067 + 74514603 74516245 L1PA5 6144 + 5364 6144 48999 248 862 0 532 chain 15515 chr6 171115067 + 74514858 74515035 LTR5_Hs 974 + 0 177 134872 177 chain 59734 chr6 171115067 + 74515035 74515713 LTR5_Hs 974 - 294 973 52975 394 0 1 284 chain 9526 chr6 171115067 + 74519274 74519389 Tigger4a 237 - 96 211 162952 115 chain 32116 chr6 171115067 + 74530667 74531039 L1PA5 6144 + 5766 6141 80659 93 0 3 279 chain 548105 chr6 171115067 + 74545108 74551122 L1PA2 6032 - 0 6020 1694 561 0 1 297 0 1 555 0 1 423 0 1 1148 0 1 845 1 0 173 0 1 1196 0 4 88 2 0 480 2 1 243 chain 72687 chr6 171115067 + 74552075 74553151 L1MA2 4263 - 152 1395 47176 6 1 0 48 7 0 17 0 1 73 1 0 9 2 1 148 3 0 144 2 1 77 6 43 74 7 11 18 1 128 37 3 0 40 0 1 47 0 5 89 0 2 18 8 13 78 22 21 56 0 3 34 chain 123745 chr6 171115067 + 74553927 74555458 THE1A-int 1579 + 1 1574 29794 17 0 5 223 0 1 566 0 5 232 13 44 480 chain 25277 chr6 171115067 + 74555463 74555800 THE1A 353 + 0 353 103330 26 0 1 56 1 0 26 12 11 156 0 17 60 chain 104635 chr6 171115067 + 74556832 74558005 L1PA3long 6157 + 4977 6157 35582 329 0 1 57 0 3 775 0 3 12 chain 20991 chr6 171115067 + 74559889 74560126 LTR7Y 441 - 38 276 123949 137 0 1 100 chain 139249 chr6 171115067 + 74560127 74561707 SVA_D 2077 - 3 2071 26257 624 0 1 4 0 1 38 0 50 14 0 2 33 0 391 13 1 0 269 0 40 134 7 17 411 6 0 26 chain 25643 chr6 171115067 + 74572411 74572761 AluY 311 + 0 304 101522 10 3 0 116 30 0 78 13 0 100 chain 4811 chr6 171115067 + 74579413 74579472 L1MB2 1706 - 190 249 197218 59 chain 16784 chr6 171115067 + 74593928 74594128 L1PA4 6152 + 5951 6151 136147 200 chain 5524 chr6 171115067 + 74613456 74613565 LTR12C 1709 + 650 718 189804 33 41 0 35 chain 2121 chr6 171115067 + 74613918 74613943 LTR12C 1709 + 1494 1519 237457 25 chain 369118 chr6 171115067 + 74614101 74618655 HERV9-int 5642 + 0 4564 11119 61 0 1 225 1 0 9 0 3 496 11 9 303 84 0 16 0 1 249 0 4 382 9 95 638 2 3 767 11 2 355 0 6 356 3 4 26 1 2 4 0 1 116 0 3 5 6 3 132 0 1 286 chain 80476 chr6 171115067 + 74624021 74624938 SVA_D 2077 - 5 1484 43399 333 0 10 5 0 1 97 0 1 181 0 536 222 1 15 78 chain 92327 chr6 171115067 + 74625885 74627014 L1PA7 6471 - 1 1142 38867 130 8 20 991 chain 546114 chr6 171115067 + 74627228 74633383 L1PA3long 6157 + 1 6157 1928 5 2 0 800 0 1 412 0 1 47 0 2 170 2 1 519 1 0 367 1 0 1362 2 1 232 0 1 388 0 1 802 0 1 1043 chain 61866 chr6 171115067 + 74635020 74635705 SVA_B 1603 - 6 690 51964 621 1 0 63 chain 30788 chr6 171115067 + 74645344 74645694 L1PA4 6152 - 11 361 82881 350 chain 68942 chr6 171115067 + 74663551 74664530 L1PB1 5432 - 380 1430 48842 50 0 1 195 3 2 99 0 2 71 4 0 11 3 1 231 15 20 15 0 62 36 0 1 88 0 1 64 45 51 49 chain 323703 chr6 171115067 + 74667640 74671219 L1PA4 6152 - 5 3584 12457 1979 1 0 27 0 1 1572 chain 3245 chr6 171115067 + 74672119 74672159 MLT1C 463 + 420 460 220111 40 chain 116993 chr6 171115067 + 74681541 74683015 L1P3 4156 + 2 1497 32128 230 16 30 57 2 1 88 0 1 78 0 1 171 5 10 451 0 1 376 chain 95862 chr6 171115067 + 74685711 74687035 L1P2 5180 - 1992 3314 37855 62 0 5 209 0 1 335 9 13 164 1 4 9 0 3 51 22 7 162 6 0 6 0 6 9 0 3 30 12 8 38 11 9 188 chain 7643 chr6 171115067 + 74687042 74687131 L1PA8 5853 + 5764 5853 173266 89 chain 96789 chr6 171115067 + 74699524 74700909 LTR12C 1709 - 0 1709 37617 77 6 5 176 8 0 162 4 6 55 11 4 11 25 0 25 0 207 144 1 0 34 0 120 106 10 11 93 13 9 76 7 50 42 1 26 5 3 0 9 25 0 256 chain 4067 chr6 171115067 + 74701208 74701254 MLT1F2 592 - 330 376 206383 46 chain 132272 chr6 171115067 + 74707416 74708888 L1PA3long 6157 - 1 1473 27568 60 0 1 795 2 1 615 chain 500898 chr6 171115067 + 74717208 74723353 L1PA4 6152 - 323 6152 6791 1012 1 0 257 7 8 1293 0 3 85 1 0 858 5 1 359 1 0 642 15 16 21 0 3 27 0 1 198 0 2 207 23 6 254 1 0 42 0 8 142 11 13 44 313 0 44 0 1 282 chain 28030 chr6 171115067 + 74722722 74723027 AluYf4 310 - 7 310 92894 185 2 0 118 chain 328066 chr6 171115067 + 74736565 74740524 L1PA5 6144 - 19 6141 12276 123 0 6 13 6 1 334 0 1 651 0 7 638 0 4 963 0 2147 204 1 0 353 2 5 24 5 6 486 10 24 15 20 6 111 chain 404601 chr6 171115067 + 74740533 74745542 L1P2 5180 - 160 5178 9958 1126 0 1 6 1 0 102 0 1 355 0 8 733 2 0 478 0 1 759 1 0 384 0 1 272 1 0 6 1 0 272 1 0 8 19 18 73 41 48 34 100 99 40 2 1 44 6 5 125 0 1 17 chain 26340 chr6 171115067 + 74746821 74747185 L1PA8 5853 - 0 357 98654 93 1 0 19 2 1 49 4 3 8 3 2 70 2 0 44 1 0 68 chain 105139 chr6 171115067 + 74749285 74751019 L1PA10 4194 - 2380 4019 35465 47 17 0 117 20 11 27 2 1 42 1 2 78 5 4 4 0 1 4 0 1 317 1 0 239 5 6 33 2 1 117 0 2 260 15 12 39 7 0 6 0 7 33 1 0 7 8 1 15 1 0 9 22 15 7 0 1 10 38 0 10 24 34 7 1 0 12 1 0 3 2 0 22 1 0 5 5 4 9 2 0 9 11 7 9 2 0 9 10 4 9 5 0 10 chain 500240 chr6 171115067 + 74788580 74794685 L1PA5 6144 - 9 6144 6823 145 8 9 36 2 1 1095 0 1 218 14 0 282 0 4 105 177 0 365 0 1 168 0 1 339 0 1 67 1 2 9 3 1 29 1 5 171 0 1 87 0 1 420 1 4 261 1 0 11 0 2 347 1 0 774 15 6 752 4 1 105 0 217 91 chain 3264 chr6 171115067 + 74798275 74798316 MER104 178 - 11 53 219721 15 0 1 26 chain 258729 chr6 171115067 + 74806732 74809553 L1PA2 6032 - 4 2839 15764 855 0 1 1185 0 13 781 chain 13663 chr6 171115067 + 74829157 74829324 L1PA5 6144 - 0 172 145732 11 2 7 154 chain 230155 chr6 171115067 + 74829324 74831929 L1PA5 6144 + 3353 5965 17298 169 2 0 162 0 2 453 1 0 116 0 3 1029 4 8 88 1 0 27 0 1 401 0 1 152 chain 2953 chr6 171115067 + 74851529 74851562 MER44A 345 - 236 269 226028 33 chain 35429 chr6 171115067 + 74855985 74856424 MLT2A1 477 - 0 477 75645 20 1 0 40 0 34 210 0 4 28 0 1 140 chain 81473 chr6 171115067 + 74856461 74857460 HERVL-int 5654 - 37 1099 42982 61 4 7 114 0 1 316 0 3 59 1 0 68 1 0 342 0 58 33 chain 44390 chr6 171115067 + 74859802 74860319 L1P1 4361 - 33 549 63350 23 1 0 154 1 0 130 1 2 207 chain 71888 chr6 171115067 + 74860319 74861145 L1PA4 6152 + 5311 6143 47525 436 15 13 292 0 8 83 chain 105804 chr6 171115067 + 74865458 74866584 L1HS 6032 - 3 1129 35303 1126 chain 11183 chr6 171115067 + 74872005 74872251 L1PB1 5432 + 5186 5427 155500 34 2 1 15 1 0 35 30 37 19 2 0 5 1 0 14 2 0 24 1 0 19 17 15 18 2 0 5 chain 25783 chr6 171115067 + 74872276 74872557 L1PA3long 6157 + 5866 6147 100949 281 chain 83949 chr6 171115067 + 74918689 74919600 L1PA2 6032 - 532 1443 41927 911 chain 48753 chr6 171115067 + 74919600 74920132 L1PA2 6032 + 5499 6030 59908 277 1 0 254 chain 497797 chr6 171115067 + 74927037 74933161 L1PA6 6164 - 4 6164 6970 8 3 0 138 5 0 6 1 6 630 0 2 859 0 4 134 0 8 228 0 12 311 10 15 28 0 1 74 2 0 420 0 7 78 2 1 856 11 0 235 0 1 636 0 1 435 0 2 190 0 1 29 0 17 197 43 42 99 12 4 245 1 0 4 1 2 6 0 1 187 chain 93609 chr6 171115067 + 74937545 74938609 L1P1 4361 + 2627 3690 38471 100 2 1 962 chain 117803 chr6 171115067 + 74955044 74956360 L1PA3long 6157 - 0 1323 31832 672 0 2 161 1 2 6 0 4 476 chain 125990 chr6 171115067 + 74956360 74957743 L1PA3long 6157 + 3445 4841 29106 657 0 13 726 chain 27400 chr6 171115067 + 74962519 74962827 L1PA3long 6157 - 1 308 94972 258 1 0 49 chain 126388 chr6 171115067 + 74964237 74965712 SVA_C 1631 - 8 1625 28979 13 1 0 354 1 0 193 0 128 56 31 33 128 0 1 656 1 9 31 0 5 10 chain 61242 chr6 171115067 + 74971286 74971964 L1PA5 6144 - 18 696 52234 678 chain 26981 chr6 171115067 + 74971964 74972271 L1PA5 6144 + 5139 5446 95730 307 chain 101850 chr6 171115067 + 74994618 74995836 L1PA8A 6298 - 9 1224 36298 97 8 0 347 2 0 60 0 1 116 0 3 173 1 3 79 0 1 335 chain 34219 chr6 171115067 + 75008944 75009323 L1PA4 6152 + 5772 6151 77322 379 chain 15767 chr6 171115067 + 75013393 75013648 L1P3 4156 - 19 273 139062 8 0 1 12 1 0 9 2 0 100 18 20 65 6 5 34 chain 81758 chr6 171115067 + 75019566 75020615 MER11C 1089 - 20 1089 42868 4 0 1 144 1 0 54 0 1 127 0 1 42 1 5 153 2 3 148 1 0 62 3 7 62 0 9 236 0 1 9 chain 29280 chr6 171115067 + 75032722 75033032 AluYb8 318 - 8 318 87650 310 chain 33370 chr6 171115067 + 75045035 75045414 L1PA4 6152 - 9 387 78619 251 1 0 127 chain 526644 chr6 171115067 + 75047467 75053630 L1PA5 6144 - 5 6144 4531 935 6 1 743 0 5 8 40 0 56 0 2 227 8 8 234 0 1 233 0 2 2111 1 0 338 1 0 136 2 0 258 0 1 698 5 19 123 chain 14257 chr6 171115067 + 75059169 75059428 MER4B 649 + 0 316 143686 27 22 28 20 5 6 30 2 0 5 0 2 7 0 53 14 3 1 65 2 1 57 chain 47013 chr6 171115067 + 75074409 75074923 L1PA3long 6157 - 594 1108 61194 514 chain 53984 chr6 171115067 + 75074923 75075516 L1PA3long 6157 + 5558 6152 56376 490 0 1 103 chain 514806 chr6 171115067 + 75082774 75088788 L1PA4 6152 - 11 6142 5691 102 0 1 35 1 0 6 0 1 184 2 1 439 0 1 67 1 5 25 1 2 2009 0 5 252 0 2 691 0 2 147 0 1 531 0 4 385 1 0 422 18 1 200 0 115 495 chain 56274 chr6 171115067 + 75090865 75091720 L1PA11 4918 - 351 1180 54980 13 1 0 13 54 41 11 1 0 15 2 0 65 26 25 391 1 2 22 1 0 65 26 18 148 chain 175026 chr6 171115067 + 75094739 75096689 L1PA3long 6157 + 4197 6150 21458 616 2 1 169 0 1 129 0 1 193 0 2 841 chain 53087 chr6 171115067 + 75098982 75099566 L1PA3long 6157 - 0 583 56965 339 1 0 244 chain 19950 chr6 171115067 + 75103662 75103970 MSTA 426 + 0 405 127300 110 14 38 53 11 64 27 5 25 88 chain 234319 chr6 171115067 + 75109863 75112572 L1PA4 6152 + 2976 6143 17079 1023 3 0 348 0 4 745 0 8 164 0 449 426 chain 68551 chr6 171115067 + 75114502 75115271 L1PA5 6144 - 1836 2619 49011 696 0 14 73 chain 150204 chr6 171115067 + 75115271 75117017 L1PA5 6144 + 4389 6144 24585 240 0 5 665 0 4 841 chain 6763 chr6 171115067 + 75132229 75132314 L1MA2 4263 + 5 89 179219 17 1 0 67 chain 27891 chr6 171115067 + 75132350 75132677 L1PA5 6144 + 4968 5294 93391 67 2 1 258 chain 75319 chr6 171115067 + 75132677 75133528 L1PA5 6144 + 5295 6144 45867 840 2 0 9 chain 24800 chr6 171115067 + 75145664 75145953 L1PA4 6152 - 7 296 105892 289 chain 102444 chr6 171115067 + 75146131 75147379 L1PA6 6164 - 2 1252 36149 14 0 1 116 39 39 469 0 1 610 chain 98940 chr6 171115067 + 75151474 75152713 L1PA8A 6298 - 8 1268 37040 102 1 0 37 0 12 86 0 1 560 4 7 74 14 15 28 0 4 296 5 6 32 chain 40415 chr6 171115067 + 75169752 75170237 L1PA7 6471 - 10 497 68715 322 0 1 83 1 2 79 chain 37316 chr6 171115067 + 75170237 75170681 L1PA7 6471 + 5534 5977 73066 4 0 1 79 1 4 197 5 0 158 chain 46642 chr6 171115067 + 75174229 75174789 L1PA7 6471 - 2 573 61499 104 2 1 10 0 11 211 0 1 233 chain 36964 chr6 171115067 + 75177864 75178338 LTR2B 499 + 5 499 73565 7 0 1 60 3 0 38 0 19 102 0 3 264 chain 53459 chr6 171115067 + 75179582 75180332 Harlequin-int 5206 + 135 887 56715 14 6 3 68 9 7 61 0 1 16 2 4 49 0 5 36 1 2 50 4 3 109 0 1 58 16 14 251 chain 484303 chr6 171115067 + 75194248 75200548 L1PA3long 6157 + 0 6155 7579 94 0 526 147 9 137 85 0 2 867 0 1 809 0 1 40 0 5 2196 806 0 215 1 0 4 0 1 266 1 0 89 1 0 670 chain 65819 chr6 171115067 + 75198522 75199252 SVA_D 2077 + 1111 2066 50182 82 0 225 648 chain 223721 chr6 171115067 + 75204855 75207471 L1PA5 6144 - 1 2596 17669 81 0 3 28 1 0 8 4 0 33 7 8 175 0 2 388 0 1 116 20 0 510 12 8 1094 0 1 139 chain 219180 chr6 171115067 + 75221183 75223617 L1PA2 6032 + 3593 6027 17935 2434 chain 97718 chr6 171115067 + 75224203 75225803 L1PA7 6471 - 32 1366 37358 45 0 2 60 325 34 47 36 0 114 0 1 26 0 1 19 0 1 270 5 0 60 4 0 128 4 10 15 0 4 38 6 58 31 0 1 148 0 1 133 0 1 86 chain 46501 chr6 171115067 + 75225803 75226391 L1PA7 6471 + 4512 5108 61489 40 0 2 114 0 4 157 0 1 124 0 1 41 1 0 16 0 2 5 1 0 89 chain 20056 chr6 171115067 + 75236138 75236380 L1PA5 6144 + 5891 6134 126948 129 0 1 113 chain 48983 chr6 171115067 + 75242986 75243521 L1PA2 6032 - 1 536 59762 535 chain 25631 chr6 171115067 + 75246453 75246778 MLT2A1 477 + 8 333 101580 124 0 1 36 4 1 9 0 1 24 0 1 128 chain 432206 chr6 171115067 + 75246882 75252556 HERVL-int 5654 + 54 5654 9260 191 8 4 344 0 1 111 84 12 107 9 3 111 13 2 25 2 0 5 0 2 30 4 2 103 15 11 681 9 10 263 0 1 4 2 1 533 0 1 144 1 3 231 0 1 18 0 4 415 12 13 50 4 0 7 0 6 299 21 13 52 0 4 94 0 2 304 0 1 491 0 9 197 1 0 21 1 0 427 5 9 40 0 1 72 2 3 111 chain 2219 chr6 171115067 + 75247593 75247616 HERVL-int 5654 + 681 704 236361 23 chain 28585 chr6 171115067 + 75252556 75252960 MLT2A1 477 + 0 405 90807 127 8 9 32 5 2 11 5 6 17 0 2 199 chain 15996 chr6 171115067 + 75257337 75257526 L1PA2 6032 - 3 198 138361 142 1 7 46 chain 26940 chr6 171115067 + 75258853 75259267 L1MA1 4479 - 3842 4243 96485 249 34 30 6 6 0 73 2 0 30 1 0 13 chain 346375 chr6 171115067 + 75265248 75269609 HERVL-int 5654 - 1272 5654 11714 52 0 2 206 0 2 206 0 2 748 1 8 503 7 8 33 0 1 237 0 1 908 0 3 91 5 1 93 4 5 147 0 1 51 1 2 130 2 3 282 9 9 343 0 1 280 0 1 22 chain 13881 chr6 171115067 + 75270302 75270467 HERVL-int 5654 + 4477 4642 144979 165 chain 14360 chr6 171115067 + 75270468 75270648 HERVL-int 5654 + 4642 4822 143343 180 chain 21291 chr6 171115067 + 75270648 75270928 HERVL-int 5654 + 4838 5119 122901 171 8 9 101 chain 41369 chr6 171115067 + 75270929 75271455 HERVL-int 5654 + 5119 5649 67446 305 1 5 220 chain 8537 chr6 171115067 + 75284441 75284548 MLT2A2 560 - 453 560 168094 107 chain 24284 chr6 171115067 + 75305497 75305765 L1PA2 6032 - 0 266 108745 13 2 0 253 chain 28250 chr6 171115067 + 75321393 75321718 L1PA4 6152 + 5834 6152 92105 160 7 0 158 chain 195413 chr6 171115067 + 75337011 75339551 L1PA10 4194 + 403 2972 19549 5 0 1 70 6 5 637 0 2 45 0 1 54 6 7 63 0 5 317 1 0 171 0 1 172 0 4 137 6 7 381 0 14 45 0 1 167 0 3 245 3 0 9 chain 544261 chr6 171115067 + 75369731 75375867 L1PA4 6152 + 6 6146 2177 590 0 1 201 0 4 1153 1 0 1210 1 0 517 1 0 1618 0 1 574 0 1 270 chain 32874 chr6 171115067 + 75388914 75389406 MER75 514 - 0 513 79411 21 1 2 21 8 13 10 9 5 48 0 2 100 4 12 235 12 21 23 chain 95287 chr6 171115067 + 75391641 75392695 L1PA3long 6157 + 5088 6141 38008 922 2 1 130 chain 17341 chr6 171115067 + 75401914 75402109 L1P1 4361 - 1443 1639 134676 34 0 1 161 chain 9284 chr6 171115067 + 75402109 75402243 L1PA5 6144 + 6006 6144 164150 50 6 13 4 1 0 66 2 0 5 chain 3162 chr6 171115067 + 75408481 75408516 MER58C 217 - 9 44 221711 35 chain 76869 chr6 171115067 + 75411158 75412009 L1PA3long 6157 - 1239 2085 44890 115 5 0 731 chain 111799 chr6 171115067 + 75412009 75413276 L1PA3long 6157 + 4913 6157 33720 751 25 2 491 chain 206446 chr6 171115067 + 75433908 75436250 L1PA5 6144 - 21 2370 18759 714 0 2 774 0 5 854 chain 18224 chr6 171115067 + 75436250 75436453 L1P1 4361 + 2988 3191 131765 203 chain 3195 chr6 171115067 + 75443557 75443615 MER53 195 + 129 189 221019 30 9 11 19 chain 17500 chr6 171115067 + 75489294 75489538 L1PA13 3608 - 172 411 134269 40 2 0 8 1 0 19 0 1 29 4 3 63 2 0 76 chain 253221 chr6 171115067 + 75495705 75498815 L1PA6 6164 - 46 3133 16068 796 0 4 146 0 5 15 0 1 366 0 5 410 0 2 152 20 11 189 28 0 54 0 1 138 0 1 126 9 1 505 0 1 44 0 2 112 chain 157238 chr6 171115067 + 75498822 75501128 L1P2 5180 + 638 2608 23695 149 0 15 446 1 0 520 6 0 56 349 23 161 0 1 310 18 0 143 6 1 112 0 4 29 chain 26253 chr6 171115067 + 75500031 75500331 L1PA5 6144 + 5835 6135 99009 300 chain 86339 chr6 171115067 + 75504291 75505688 L1PB1 5432 + 4101 5427 41026 219 19 22 35 11 3 219 0 6 6 10 4 6 3 0 22 0 1 23 16 18 298 2 1 98 63 32 23 1 0 9 1 0 12 5 1 9 2 0 52 2 1 9 7 6 44 1 0 16 3 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 27915 chr6 171115067 + 75506069 75506368 AluYg6 310 - 11 310 93304 299 chain 27503 chr6 171115067 + 75514980 75515350 L1PA7 6471 + 6101 6468 94642 206 13 11 5 0 3 4 1 0 129 3 0 9 chain 48842 chr6 171115067 + 75533739 75534316 L1PA5 6144 - 14 600 59846 137 1 2 331 0 8 108 chain 25873 chr6 171115067 + 75540902 75541209 L1PA7 6471 + 6012 6320 100554 219 0 1 88 chain 5704 chr6 171115067 + 75542537 75542755 L1MC3 1789 + 1178 1386 188069 55 125 117 25 2 0 11 chain 38376 chr6 171115067 + 75545261 75545718 L1PA5 6144 - 0 460 71607 11 2 5 444 chain 123298 chr6 171115067 + 75545731 75547148 L1PA5 6144 + 4242 5677 29944 379 0 1 14 1 0 447 5 10 201 1 0 253 13 25 97 0 2 6 chain 74827 chr6 171115067 + 75571164 75572025 L1PA5 6144 + 5270 6132 46097 731 0 1 130 chain 26599 chr6 171115067 + 75581642 75581984 THE1A 353 + 0 353 97664 167 3 14 172 chain 26930 chr6 171115067 + 75584481 75584787 AluYk4 311 - 5 311 96515 306 chain 8980 chr6 171115067 + 75586986 75587087 L1PA4 6152 - 281 382 165711 101 chain 534737 chr6 171115067 + 75593010 75599141 L1PA4 6152 - 9 6152 3623 164 1 3 501 0 2 1007 1 0 527 0 1 287 1 0 480 1 0 781 0 4 394 0 7 907 1 2 416 1 0 232 0 1 260 11 9 158 chain 539177 chr6 171115067 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6157 + 4844 6142 32857 1127 0 1 170 chain 482719 chr6 171115067 + 75722683 75728174 L1PA5 6144 + 642 6137 7634 38 0 3 684 0 1 216 8 5 119 0 1 625 0 1 1580 0 1 82 1 0 1745 0 1 356 0 6 7 6 0 24 chain 97393 chr6 171115067 + 75728926 75730247 L1MA2 4263 - 972 2377 37454 128 2 3 287 7 9 218 0 2 60 4 70 197 4 7 57 5 8 14 3 9 201 0 1 12 0 1 37 1 0 84 chain 137598 chr6 171115067 + 75740572 75742303 L1P2 5180 + 2 1734 26545 147 2 1 43 2 1 53 3 2 266 0 1 47 1 0 224 0 15 403 27 16 84 6 5 278 0 1 145 chain 36670 chr6 171115067 + 75743165 75743596 L1P1 4361 - 20 448 73999 12 2 1 23 1 0 155 1 0 237 chain 12009 chr6 171115067 + 75744753 75744884 L1PA5 6144 + 6006 6137 152159 131 chain 79203 chr6 171115067 + 75753298 75754211 L1PA5 6144 - 2 938 43944 111 1 0 25 0 7 152 0 17 624 chain 24354 chr6 171115067 + 75801771 75802068 L1PA7 6471 + 6166 6467 108349 130 0 4 167 chain 30114 chr6 171115067 + 75805051 75805367 AluYb8 318 + 0 316 84436 316 chain 6378 chr6 171115067 + 75850595 75850679 MER33 330 + 21 101 182189 14 4 0 66 chain 176980 chr6 171115067 + 75871249 75873387 L1PA7 6471 + 4336 6466 21253 338 0 4 113 0 1 148 0 1 165 16 7 241 1 0 264 4 3 838 3 0 7 chain 24535 chr6 171115067 + 75883991 75884286 AluYk4 311 + 0 296 107342 42 1 2 252 chain 26190 chr6 171115067 + 75891937 75892259 L1PA7 6471 - 10 331 99237 140 1 0 181 chain 52534 chr6 171115067 + 75903310 75903903 L1PA5 6144 - 12 608 57276 93 0 4 333 1 0 166 chain 10057 chr6 171115067 + 75907927 75908056 MER85 139 - 0 139 160293 38 1 11 90 chain 7599 chr6 171115067 + 75926461 75926588 MLT1A0 366 - 228 357 173555 42 13 14 31 0 6 17 5 0 19 chain 4076 chr6 171115067 + 75938654 75938701 L1MA8 2339 + 1477 1524 206247 47 chain 6265 chr6 171115067 + 75940989 75941078 MER8 282 - 13 101 183042 29 5 4 55 chain 29299 chr6 171115067 + 75957797 75958103 AluYa5 310 - 4 310 87579 306 chain 26848 chr6 171115067 + 75958106 75958433 MER4E 760 + 422 760 96813 22 1 0 89 2 1 150 0 13 63 chain 22246 chr6 171115067 + 75958706 75958962 AluSc 308 + 15 290 119134 121 0 19 135 chain 4462 chr6 171115067 + 75978369 75978634 MER21C 908 + 666 803 201216 19 34 25 14 115 0 14 2 0 14 1 0 15 18 17 19 chain 10196 chr6 171115067 + 75990108 75990322 MER58D 378 - 82 295 159646 38 5 6 25 6 0 6 1 8 13 1 0 13 6 0 18 22 27 25 1 0 34 chain 9358 chr6 171115067 + 76026946 76027064 MER85 139 - 0 128 163760 30 0 10 88 chain 113764 chr6 171115067 + 76033807 76035751 L1PB2 3958 + 2267 3830 33157 217 0 1 5 54 8 282 0 1 19 0 1 123 1 0 123 0 2 218 311 0 12 1 5 23 2 0 37 14 17 13 4 0 62 2 0 15 5 0 39 7 6 95 17 0 26 1 0 62 1 0 74 28 26 51 chain 9844 chr6 171115067 + 76039814 76039968 MER96B 391 - 229 381 161374 47 3 0 7 5 7 77 1 0 14 chain 16492 chr6 171115067 + 76062743 76062931 L1PA5 6144 + 5955 6143 136953 188 chain 23114 chr6 171115067 + 76081816 76082101 AluSp 311 + 20 300 115071 51 5 0 229 chain 239699 chr6 171115067 + 76096561 76099517 L1PA7 6471 - 1 2931 16790 125 21 7 8 11 0 285 23 1 340 12 17 23 0 6 37 1 0 32 2 0 435 0 1 34 0 1 235 0 1 210 0 4 52 0 1 20 1 0 16 0 1 51 0 4 11 0 1 411 1 0 493 0 1 66 chain 26539 chr6 171115067 + 76102378 76102744 THE1B 368 + 0 368 97889 13 2 0 23 0 5 115 0 1 15 12 11 102 9 8 75 chain 20238 chr6 171115067 + 76106651 76106883 L1PA4 6152 + 5911 6143 126418 232 chain 3008 chr6 171115067 + 76108575 76108760 U3 216 - 0 194 224873 17 133 141 31 0 1 4 chain 37476 chr6 171115067 + 76115222 76115694 LTR10F 562 - 0 562 72848 131 0 3 122 0 1 7 1 0 67 1 4 17 0 84 126 chain 180344 chr6 171115067 + 76120116 76122260 L1PA7 6471 - 1 2131 20961 402 0 1 22 24 1 427 0 3 302 0 2 962 0 3 5 chain 89148 chr6 171115067 + 76132443 76133701 HSMAR1 1287 + 5 1251 39946 76 3 6 29 3 9 68 0 2 189 0 3 92 9 10 133 35 5 277 30 33 314 chain 213104 chr6 171115067 + 76142399 76144922 L1PA5 6144 - 0 2521 18288 206 0 4 385 0 1 250 1 5 113 23 8 891 0 2 349 0 1 24 0 1 22 2 1 6 0 1 251 chain 158850 chr6 171115067 + 76150703 76152484 SVA_D 2077 - 4 2077 23479 375 0 2 258 1 0 37 9 8 4 0 1 196 0 78 29 0 51 31 0 85 153 0 40 664 0 37 24 chain 64267 chr6 171115067 + 76158176 76159182 L1PB1 5432 + 4425 5422 50891 188 5 13 168 0 8 36 3 15 86 18 15 97 3 0 52 13 11 16 5 4 10 1 0 12 14 6 5 0 2 51 2 1 9 5 6 45 1 0 15 1 0 4 3 0 13 9 0 10 6 4 5 1 0 14 2 0 46 1 0 12 1 0 18 chain 38760 chr6 171115067 + 76161825 76162260 L1PA4 6152 - 0 435 71066 6 1 0 107 0 1 321 chain 11802 chr6 171115067 + 76183454 76183595 U1 164 - 1 142 153029 141 chain 103326 chr6 171115067 + 76215630 76217278 L1PA11 4918 + 3195 4504 35917 137 331 0 35 1 4 846 10 0 116 0 5 55 2 1 13 2 0 66 2 0 18 1 0 13 chain 21084 chr6 171115067 + 76244975 76245279 THE1B 368 - 0 313 123604 125 17 29 10 8 6 29 1 0 114 chain 25350 chr6 171115067 + 76245599 76245892 AluY 311 + 18 311 102948 293 chain 36250 chr6 171115067 + 76248597 76249074 MER75 514 - 0 475 74560 14 1 5 9 5 0 45 0 2 291 3 0 109 chain 25643 chr6 171115067 + 76261785 76262053 AluYd8 298 + 20 288 101530 268 chain 7853 chr6 171115067 + 76264947 76265059 MER2 342 + 206 319 171973 88 5 6 19 chain 6739 chr6 171115067 + 76270430 76270507 L1PA8 5853 + 5776 5853 179404 77 chain 28375 chr6 171115067 + 76278361 76278715 THE1A 353 - 0 353 91679 241 1 0 112 chain 280685 chr6 171115067 + 76278734 76283946 L1PA10 4194 + 197 4104 14605 10 2 0 9 11 7 9 2 0 8 6 5 5 1 0 22 2 0 15 1 0 7 37 12 8 1 0 21 2 0 21 1 0 7 1 0 11 1 0 6 5 0 15 13 0 7 5 3 77 12 10 32 0 3 102 15 17 156 321 35 211 1 0 114 2 1 22 2 0 102 323 7 181 0 1 5 8 9 138 35 37 155 5 1 111 11 1 294 0 4 621 0 19 85 0 1 107 306 0 126 356 0 249 1 4 81 0 1 173 1 0 7 3 4 126 6 8 100 1 5 156 chain 60290 chr6 171115067 + 76292175 76293382 L1PB2 3958 - 184 1086 52686 21 2 0 67 6 5 127 0 1 4 5 4 94 319 14 49 0 2 9 4 0 12 0 2 49 7 5 13 3 4 71 5 9 167 10 11 110 1 0 52 chain 84781 chr6 171115067 + 76293382 76294470 L1PB2 3958 + 1783 2863 41601 455 0 2 241 9 0 147 1 0 235 chain 17368 chr6 171115067 + 76339466 76340271 LTR23 429 - 15 429 134600 25 107 79 11 12 11 61 16 12 54 349 9 12 27 7 27 4 7 5 1 0 94 chain 519995 chr6 171115067 + 76392126 76398244 L1PA6 6164 - 2 6164 5163 705 1 0 13 1 0 124 0 5 105 0 7 1838 0 5 75 0 12 82 2 1 102 0 1 4 1 0 87 15 0 94 0 4 572 0 1 388 1 0 179 3 4 830 16 1 70 0 20 9 0 17 235 3 5 47 0 2 280 0 2 236 chain 87414 chr6 171115067 + 76413794 76414811 LTR5B 1012 - 0 1012 40601 67 0 1 799 14 0 23 0 8 114 chain 22397 chr6 171115067 + 76449666 76450020 THE1B 368 - 0 368 118500 10 2 4 49 1 2 9 1 0 69 20 19 32 9 7 112 0 15 40 chain 10938 chr6 171115067 + 76453390 76453525 MER31A 484 - 337 472 156455 135 chain 24283 chr6 171115067 + 76459814 76460111 AluSg7 307 - 11 307 108752 164 1 0 132 chain 45342 chr6 171115067 + 76507149 76508118 L1PA16 3655 - 367 1323 62665 70 351 27 127 0 308 82 1 0 34 0 1 34 2 0 205 0 4 47 2 3 14 chain 40334 chr6 171115067 + 76516203 76516702 MER9a2 513 + 0 513 68828 283 1 18 145 4 0 46 5 6 15 chain 15370 chr6 171115067 + 76517488 76517694 MER41A 554 - 341 553 140293 123 11 17 72 chain 6652 chr6 171115067 + 76522790 76522873 L1M1 2793 - 900 984 180068 63 0 1 20 chain 53539 chr6 171115067 + 76559243 76559941 LTR30 714 - 10 714 56653 13 1 0 30 36 37 370 0 5 68 0 1 180 chain 13957 chr6 171115067 + 76590093 76590294 MER30 238 - 4 213 144721 44 3 0 55 19 30 80 chain 4554 chr6 171115067 + 76599673 76599731 L1MB2 1706 - 16 74 200173 58 chain 537528 chr6 171115067 + 76609458 76615455 L1PA3long 6157 - 4 6152 3231 850 0 3 773 0 10 2198 1 0 1380 0 1 34 0 128 34 0 1 231 6 10 117 0 5 60 2 1 164 0 1 147 chain 25350 chr6 171115067 + 76639144 76639426 L1PA4 6152 + 5865 6151 102949 49 0 4 233 chain 35325 chr6 171115067 + 76648928 76649330 L1PA4 6152 - 11 412 75766 135 5 4 262 chain 44657 chr6 171115067 + 76658848 76659392 MER41A 554 + 0 554 63426 87 4 14 453 chain 22771 chr6 171115067 + 76662988 76663314 L1PA7 6471 - 7 340 116721 6 4 0 122 11 0 14 10 24 20 0 8 139 chain 516328 chr6 171115067 + 76663340 76670046 L1PA7 6471 - 10 6471 5546 847 1 0 325 5 6 673 0 14 586 0 3 178 0 1 275 0 4 352 1 0 37 315 0 255 6 8 73 6 7 120 0 2 401 0 14 116 0 4 42 1 2 12 3 5 251 5 1 104 3 15 54 8 12 306 1 0 215 0 12 23 5 1 6 0 4 422 3 8 150 1 0 250 6 7 86 10 5 167 chain 54302 chr6 171115067 + 76680590 76681196 L1PA4 6152 + 5546 6152 56158 606 chain 4014 chr6 171115067 + 76681637 76681691 LTR37A 408 + 266 320 207181 36 1 0 5 0 1 12 chain 39275 chr6 171115067 + 76690099 76690601 MLT2A2 560 + 19 551 70361 135 6 7 149 0 18 72 7 18 133 chain 76218 chr6 171115067 + 76697023 76698239 L1PA5 6144 - 0 899 45354 140 6 0 125 1 0 59 310 0 575 chain 30072 chr6 171115067 + 76721306 76721630 L1PA2 6032 - 5 329 84592 324 chain 59844 chr6 171115067 + 76730424 76731184 MER4E1 777 + 0 759 52903 23 1 0 94 5 1 58 5 4 365 8 13 201 chain 252969 chr6 171115067 + 76736694 76740355 MER61-int 3695 + 1 3341 16083 29 4 0 66 0 2 96 39 0 66 13 12 138 16 2 60 1 0 187 1 0 184 15 20 89 0 2 168 0 5 34 0 4 269 1 3 86 297 6 251 4 5 315 0 1 284 10 0 48 1 0 119 0 3 210 1 0 98 1 0 32 1 0 5 1 0 251 5 6 45 0 19 120 chain 26273 chr6 171115067 + 76744937 76745245 AluSp 311 + 0 311 98922 91 0 3 217 chain 25650 chr6 171115067 + 76779285 76779701 L1PA16 3655 + 3187 3590 101497 13 2 1 90 2 0 65 14 13 45 6 0 17 20 20 126 3 0 13 chain 20336 chr6 171115067 + 76793465 76793842 THE1C 375 - 11 375 126118 14 30 32 4 1 0 120 0 1 4 0 5 6 9 5 55 45 29 89 chain 484749 chr6 171115067 + 76807210 76813254 L1PA7 6471 + 245 6464 7567 163 1 2 439 1 2 453 0 3 111 3 4 331 0 1 540 20 35 151 0 141 15 2 3 119 0 4 74 1 0 360 0 1 6 0 3 27 0 1 135 11 12 90 11 15 43 5 3 17 2 6 93 0 1 182 16 0 171 5 0 654 0 1 9 0 8 145 0 1 95 1 0 147 0 3 266 1 2 142 0 1 27 0 3 118 1 0 294 0 1 466 1 0 8 0 2 6 2 0 63 chain 544652 chr6 171115067 + 76815335 76821358 L1PA2 6032 - 4 6031 2119 801 0 1 710 4 3 470 0 3 110 0 1 3312 0 1 360 1 0 255 chain 474476 chr6 171115067 + 76823107 76828624 L1PA5 6144 - 13 6144 7898 240 1 0 175 0 1 172 0 1 57 0 602 356 0 1 579 1 0 264 2 1 1004 0 16 398 0 1 16 0 2 250 0 1 5 1 0 631 18 9 379 0 2 968 chain 15729 chr6 171115067 + 76834226 76834450 L1PA8 5853 - 0 221 139178 93 1 0 19 2 1 61 2 1 11 0 1 4 1 0 30 chain 507881 chr6 171115067 + 76847618 76853592 L1PA5 6144 - 0 6144 6334 824 8 1 652 0 121 69 0 1 544 1 2 653 7 12 549 0 53 848 1 2 498 1 3 160 0 3 140 2 1 909 0 4 56 13 0 39 chain 130066 chr6 171115067 + 76857465 76859104 L1PA6 6164 + 4030 6162 28072 150 1 2 345 0 5 147 21 11 134 0 493 15 1 2 219 1 4 406 5 6 33 12 13 141 2 0 6 chain 128743 chr6 171115067 + 76859431 76860906 L1PA5 6144 - 6 1479 28378 215 0 1 628 2 0 513 1 0 116 chain 14227 chr6 171115067 + 76866877 76867217 L1PB1 5432 - 13 324 143804 15 1 0 12 2 1 21 1 0 24 2 0 13 2 1 6 1 0 18 42 29 38 8 9 11 2 1 50 4 2 9 5 1 14 1 0 6 1 0 24 1 0 6 chain 68423 chr6 171115067 + 76867277 76868186 MER11A 1151 + 166 1151 49078 64 1 0 64 0 11 27 0 2 225 1 0 52 7 8 126 0 4 65 0 27 20 0 32 99 5 6 87 8 7 54 0 1 4 chain 68278 chr6 171115067 + 76886523 76887339 L1PA6 6164 - 3 819 49132 7 2 0 300 0 1 21 0 1 486 chain 79997 chr6 171115067 + 76895840 76896792 L1PA6 6164 - 7 960 43595 13 1 0 125 0 1 191 0 1 46 0 1 381 1 0 194 chain 19563 chr6 171115067 + 76900300 76900548 THE1C-int 1605 + 1344 1596 128483 148 2 1 24 0 5 74 chain 190717 chr6 171115067 + 76901923 76904025 L1PA3long 6157 + 4055 6157 19979 2102 chain 171741 chr6 171115067 + 76906312 76908267 L1PA3long 6157 - 0 1956 21853 5 2 0 247 18 19 818 8 9 739 0 1 118 chain 6486 chr6 171115067 + 76910167 76910239 L1PA7 6471 + 4415 4487 181350 72 chain 161489 chr6 171115067 + 76910239 76912206 L1PA7 6471 + 4488 6470 23127 181 0 8 815 0 1 238 0 5 12 0 1 548 14 14 159 chain 60475 chr6 171115067 + 76912604 76913690 L1PB1 5432 - 10 917 52596 18 1 0 6 2 0 6 0 1 21 1 0 22 23 21 18 15 7 6 3 0 15 1 0 39 27 25 50 2 0 8 17 12 13 1 0 20 1 0 11 149 0 395 0 1 79 3 0 113 chain 28729 chr6 171115067 + 76920096 76920435 L1PA7 6471 + 3893 4232 90211 339 chain 190951 chr6 171115067 + 76920436 76922681 L1PA7 6471 + 4232 6464 19961 584 2 0 1049 11 0 137 0 2 7 2 0 453 chain 49391 chr6 171115067 + 76951277 76951850 L1PA6 6164 + 5587 6162 59454 398 1 3 174 chain 267741 chr6 171115067 + 76989697 76993165 L1PA7 6471 - 6 5634 15308 6 2 0 139 4 0 10 3 2 176 0 1 140 1 25 262 0 1 73 0 6 3 4 0 93 0 1 53 0 5 97 4 5 5 0 1 531 0 1 108 0 1 33 0 3 45 0 1 67 0 1 77 1 0 184 2 0 5 0 2 19 0 1 36 4 3 72 1 2110 109 0 1 100 5 17 21 4 3 7 0 2 32 0 1 539 1 2 390 chain 53766 chr6 171115067 + 77002596 77003261 L1PA7 6471 - 13 678 56496 485 0 1 104 2 1 74 chain 523667 chr6 171115067 + 77003267 77009393 L1PA4 6152 - 11 6146 4793 2200 0 1 239 1 0 8 0 2 175 0 1 846 1 0 290 0 2 240 5 6 421 1 0 118 2 1 5 0 1 5 0 3 137 2 0 1130 4 5 164 0 3 132 chain 256230 chr6 171115067 + 77009713 77013282 L1P2 5180 - 2 3449 15921 4 1 0 38 1 0 49 9 8 39 1 10 233 10 14 148 1 0 222 7 12 126 2 0 86 1 0 4 0 1 203 3 4 59 8 4 207 12 14 103 0 1 330 0 3 14 6 10 43 5 0 543 20 19 83 16 17 37 0 3 109 0 1 49 2 0 7 0 2 251 152 11 88 0 1 237 chain 8902 chr6 171115067 + 77012805 77012925 L1P2 5180 - 1293 1417 163447 12 0 1 93 0 3 15 chain 13339 chr6 171115067 + 77017309 77017643 MLT1A 405 - 8 351 146934 6 0 5 97 130 127 21 1 0 6 5 13 68 chain 25358 chr6 171115067 + 77022353 77022888 L1PA11 4918 - 289 782 102905 18 47 33 11 2 0 13 1 0 15 37 22 9 4 0 20 1 0 16 2 0 60 13 11 6 1 0 11 6 5 51 2 0 5 2 0 6 0 4 58 4 5 114 chain 23972 chr6 171115067 + 77046770 77047076 AluYk4 311 - 6 311 110495 161 13 12 132 chain 23852 chr6 171115067 + 77054185 77054532 THE1B 368 + 0 367 111176 44 1 16 112 8 6 19 2 0 109 5 13 29 3 4 15 chain 71878 chr6 171115067 + 77077103 77079125 L1PA8A 6298 - 6 2030 9006 322 19 8 176 0 1 265 25 31 221 0 1 48 0 1 7 0 6 73 6 5 298 15 14 547 chain 538512 chr6 171115067 + 77079149 77085308 L1PA4 6152 - 1 6151 3066 714 0 3 137 0 3 1355 0 1 429 2 0 1223 0 1 575 1 0 359 0 3 111 0 1 824 18 0 411 chain 149160 chr6 171115067 + 77085331 77089527 L1PA8A 6298 - 2074 6264 9006 21 0 1 16 1 0 4 20 1 6 0 3 20 1 2 12 0 2 257 2 0 10 0 1 6 4 6 315 0 2 62 0 2 26 1 8 24 0 4 7 5 0 7 5 8 42 0 4 183 2 3 189 7 11 27 0 2 54 6 5 330 0 22 9 0 1 458 0 1 54 0 8 40 0 5 719 5 4 58 0 1 35 0 6 6 21 10 119 0 1 29 18 19 477 39 37 15 2 0 76 0 1 5 7 0 58 56 47 12 7 4 15 2 0 12 1 0 17 4 3 9 1 0 17 3 0 3 9 0 6 0 3 20 3 0 20 6 1 5 2 0 9 10 6 18 1 0 6 chain 197640 chr6 171115067 + 77100264 77102584 L1P1 4361 + 4 2345 19380 112 5 19 418 0 1 313 0 2 194 18 18 366 0 4 894 chain 7114 chr6 171115067 + 77112077 77112156 L1PA2 6032 - 257 336 176653 79 chain 23607 chr6 171115067 + 77112156 77112418 L1PA2 6032 + 5770 6032 112538 262 chain 32359 chr6 171115067 + 77116351 77116763 MER11C 1089 - 655 1089 80257 48 1 0 63 4 8 60 0 9 79 0 1 131 0 9 26 chain 4645 chr6 171115067 + 77127831 77127885 MLT1E1A 663 + 185 239 199126 54 chain 7627 chr6 171115067 + 77131909 77132019 MER30 238 - 0 112 173367 19 1 0 29 3 0 32 0 6 26 chain 57210 chr6 171115067 + 77145963 77146621 L1PA5 6144 + 5487 6144 54397 116 0 1 531 2 0 9 chain 17132 chr6 171115067 + 77154882 77155088 AluSp 311 + 80 286 135223 206 chain 74482 chr6 171115067 + 77170860 77171886 MER11C 1089 - 26 1077 46284 143 1 0 54 0 1 20 7 20 87 0 1 38 1 0 7 0 4 12 1 0 72 15 13 19 41 40 147 8 7 57 0 4 62 4 13 230 chain 65267 chr6 171115067 + 77196297 77197057 L1P1 4361 - 33 789 50435 23 1 0 155 1 0 464 1 6 6 7 0 102 chain 41671 chr6 171115067 + 77197057 77197627 MER11B 1079 - 508 1079 67066 24 14 13 98 10 9 67 3 6 354 chain 84537 chr6 171115067 + 77198609 77204176 HERVK11-int 2540 - 306 1862 41705 123 4 8 73 6 5 190 1 0 51 1 0 4 0 1 49 16 11 66 0 1 363 20 0 35 12 1 27 1 0 11 10 0 18 11 8 10 6 5 35 35 34 34 2 0 27 59 43 16 68 60 14 3928 42 35 77 41 21 2 0 9 1 0 4 14 8 10 13 8 55 chain 76102 chr6 171115067 + 77205335 77206415 MER11B 1079 - 5 1079 45420 24 2 1 42 0 1 117 4 5 16 0 1 41 5 6 51 0 2 8 1 2 16 10 0 194 14 13 55 3 0 43 12 11 65 3 6 354 chain 5902 chr6 171115067 + 77229536 77229609 LTR50 688 + 8 81 186166 73 chain 17190 chr6 171115067 + 77230646 77230945 L1PB 1623 - 99 366 135060 11 13 0 11 8 4 9 3 0 5 1 0 31 1 0 7 1 0 141 10 1 47 chain 26770 chr6 171115067 + 77239397 77239763 MLT2A1 477 + 33 397 97090 136 5 2 8 0 1 24 0 1 14 1 2 40 4 5 118 3 0 13 chain 35166 chr6 171115067 + 77244824 77245294 MER4A1 472 - 0 472 75959 10 0 1 4 1 0 225 9 11 5 3 0 115 0 2 53 0 1 45 chain 26146 chr6 171115067 + 77259872 77260192 L1PA7 6471 + 6150 6469 99418 151 0 1 7 2 0 160 chain 29682 chr6 171115067 + 77270743 77271142 LTR7 482 + 0 482 85893 101 15 14 17 0 51 41 5 37 46 0 1 174 chain 5384 chr6 171115067 + 77272016 77272083 LTR7 482 + 2 69 191142 67 chain 22900 chr6 171115067 + 77272091 77272405 LTR7 482 + 115 474 116107 109 0 1 39 0 31 19 0 10 41 1 2 52 12 14 41 chain 6046 chr6 171115067 + 77296717 77296960 MERX 374 - 34 280 184838 55 3 0 6 111 123 17 25 19 26 chain 32761 chr6 171115067 + 77306329 77306958 L1PB1 5432 + 4849 5422 79596 249 44 16 24 1 0 4 3 2 10 11 7 8 2 0 50 1 0 63 40 28 16 39 35 9 1 0 22 1 0 12 1 0 18 chain 174877 chr6 171115067 + 77308909 77312480 L1PA10 4194 + 1655 4143 21478 138 0 1 57 6 7 86 12 13 252 0 1 15 4 8 202 2 8 5 1 0 97 0 1 4 1 0 255 1 0 123 3 6 211 32 1 61 1103 53 110 0 1 14 3 8 23 18 0 17 17 0 273 7 18 27 8 9 59 11 9 184 0 5 100 3 0 26 chain 54858 chr6 171115067 + 77310482 77311208 L1PA7 6471 + 5811 6459 55793 102 79 0 410 0 1 135 chain 28456 chr6 171115067 + 77319634 77319983 L1PA5 6144 + 5785 6128 91349 106 4 1 136 3 0 100 chain 521306 chr6 171115067 + 77332560 77338995 L1PA5 6144 - 0 6140 5029 11 3 1 1401 1 12 412 2 1 43 2 0 190 301 0 1127 1 2 630 2 1 245 0 1 217 0 1 146 1 0 533 9 0 18 4 7 223 0 4 139 0 1 205 1 0 4 0 1 564 chain 4764 chr6 171115067 + 77348443 77348726 L1MB7 1623 + 1165 1429 197761 22 206 188 48 1 0 6 chain 40801 chr6 171115067 + 77363728 77364190 L1PA5 6144 - 0 462 68170 462 chain 29478 chr6 171115067 + 77384095 77384414 AluYb8 318 + 1 313 86725 304 7 0 8 chain 35219 chr6 171115067 + 77397606 77398016 L1PA6 6164 - 17 427 75898 410 chain 12510 chr6 171115067 + 77436969 77437115 L1PA6 6164 - 310 458 150206 138 0 2 8 chain 220124 chr6 171115067 + 77437128 77439743 L1P1 4361 - 1740 4357 17874 90 0 1 2027 26 26 39 1 2 432 chain 3302 chr6 171115067 + 77444528 77444568 L1PA5 6144 - 2745 2785 218930 40 chain 41824 chr6 171115067 + 77444576 77445051 L1PA5 6144 - 2794 3269 66859 475 chain 240173 chr6 171115067 + 77445051 77447793 L1PA5 6144 + 3402 6142 16761 1167 4 1 57 0 1 368 1 0 256 0 1 889 chain 197294 chr6 171115067 + 77449383 77452231 L1PB1 5432 - 5 2785 19402 5 3 0 17 6 5 30 1 0 26 2 0 13 7 4 16 19 9 6 3 0 16 9 9 35 1 0 17 2 1 38 0 2 11 2 0 8 2 0 3 2 0 9 1 0 33 63 11 311 11 8 42 1 0 5 0 1 104 0 4 227 1 0 46 1 0 43 9 14 92 0 2 483 3 0 252 0 4 61 8 19 313 0 2 5 0 1 4 1 0 43 3 0 38 0 1 89 16 10 37 1 0 14 1 0 8 1 2 54 1 4 113 chain 160036 chr6 171115067 + 77453399 77455230 SVA_F 1814 + 0 1814 23334 887 0 1 59 0 15 86 37 0 732 0 3 8 0 1 22 chain 483890 chr6 171115067 + 77455376 77460859 L1PA3long 6157 - 7 6156 7592 142 0 1 2741 0 4 884 0 1 1301 0 5 115 0 4 48 0 128 154 0 526 90 3 0 5 chain 33686 chr6 171115067 + 77471411 77471832 THE1C-int 1605 - 0 422 78116 31 9 8 267 0 3 26 1 0 87 chain 4577 chr6 171115067 + 77489212 77489310 L1MB7 1623 + 759 859 199903 30 31 33 37 chain 105283 chr6 171115067 + 77495539 77496820 L1PA7 6471 + 5190 6468 35430 249 0 1 132 7 0 48 0 4 6 4 5 65 1 0 436 0 1 321 2 0 10 chain 19352 chr6 171115067 + 77498629 77499007 MSTA 426 - 0 426 129062 109 98 119 39 0 6 20 12 33 100 chain 13799 chr6 171115067 + 77506586 77506925 L1PB1 5432 - 10 318 145278 18 1 0 13 1 0 21 1 0 26 83 65 35 14 13 9 3 2 52 2 0 9 5 1 12 1 0 8 1 0 24 chain 9919 chr6 171115067 + 77510595 77510709 L1PB1 5432 - 3711 3825 160975 114 chain 3522 chr6 171115067 + 77515413 77515456 LTR1B 797 + 67 110 215028 43 chain 40229 chr6 171115067 + 77518150 77518635 L1PA7 6471 - 2 485 68988 10 2 0 473 chain 3251 chr6 171115067 + 77527871 77527923 MER52A 1651 + 892 936 219993 24 8 0 20 chain 124810 chr6 171115067 + 77531530 77534815 L1PA11 4918 - 587 2582 29447 17 0 1 246 1 2 183 17 18 28 1 0 173 1 0 381 1574 283 16 0 3 67 0 1 196 1 0 61 31 31 77 2 0 138 1 0 73 chain 70857 chr6 171115067 + 77533162 77534133 MER11A 1151 - 0 1149 47984 8 0 1 154 8 9 12 1 0 46 0 1 28 0 81 121 5 6 116 1 0 29 0 1 94 15 16 39 2 1 94 4 0 66 1 0 61 0 99 66 chain 354536 chr6 171115067 + 77554202 77558591 L1PA7 6471 - 1 4399 11487 62 27 30 215 11 4 27 0 1 510 1 0 672 1 0 139 0 5 160 1 5 154 0 1 115 0 1 5 1 0 382 0 1 375 0 2 210 0 4 147 4 0 6 17 21 513 9 4 58 0 2 567 chain 120887 chr6 171115067 + 77585476 77586792 L1HS 6032 - 4720 6032 30732 830 4 0 482 chain 80787 chr6 171115067 + 77600804 77601677 L1PA3long 6157 + 5284 6157 43277 873 chain 16935 chr6 171115067 + 77602988 77603350 THE1C 375 - 0 360 135764 32 1 0 115 47 42 5 0 2 49 69 71 44 chain 535892 chr6 171115067 + 77609939 77615944 L1PA3long 6157 - 13 6157 3459 96 7 1 781 0 5 634 0 1 1333 0 1 22 0 4 508 0 1 1848 0 128 215 0 4 409 1 2 151 chain 7713 chr6 171115067 + 77624220 77624325 L1MB3 1562 + 1281 1385 172846 71 1 0 33 chain 26134 chr6 171115067 + 77655467 77655780 L1PA6 6164 + 5851 6162 99464 303 2 0 8 chain 28444 chr6 171115067 + 77666965 77667470 L1PREC2 3366 + 2467 2953 91406 16 5 3 24 10 11 59 3 0 5 0 8 121 1 0 33 1 0 5 2 0 54 4 3 41 1 0 3 3 0 11 32 24 16 13 8 10 1 0 31 chain 537352 chr6 171115067 + 77668682 77674710 L1PA3long 6157 + 2 6156 3264 150 0 1 131 11 0 492 0 128 552 1 0 391 0 5 730 1 2 1362 0 1 2202 0 2 5 chain 24817 chr6 171115067 + 77675322 77675672 THE1B 368 + 6 368 105793 38 0 15 109 2 0 124 4 3 41 6 9 5 3 0 18 chain 114128 chr6 171115067 + 77686296 77687558 L1PA3long 6157 - 0 1262 33061 1262 chain 92345 chr6 171115067 + 77689339 77690448 L1P3 4156 - 17 1123 38862 24 2 1 7 1 0 503 1 2 46 1 0 24 2 1 498 chain 16383 chr6 171115067 + 77690460 77690668 L1PA7 6471 + 6257 6465 137248 208 chain 24814 chr6 171115067 + 77739049 77739331 L1PA4 6152 - 268 550 105811 282 chain 57099 chr6 171115067 + 77752968 77753581 L1PA2 6032 - 1257 1870 54411 613 chain 116044 chr6 171115067 + 77753581 77754836 L1PA2 6032 + 4777 6032 32439 1255 chain 10462 chr6 171115067 + 77756600 77756718 L1PA3long 6157 + 6033 6151 158430 118 chain 47243 chr6 171115067 + 77759132 77759711 L1PA7 6471 - 2139 2719 61004 62 0 1 259 0 5 7 6 0 162 0 1 83 chain 173747 chr6 171115067 + 77759711 77761854 L1PA7 6471 + 4351 6463 21619 621 39 7 109 14 14 127 0 3 392 2 0 839 chain 39518 chr6 171115067 + 77763295 77763749 L1PA5 6144 + 5690 6143 69999 195 1 0 258 chain 27156 chr6 171115067 + 77766216 77766546 L1PA4 6152 - 629 959 95733 28 0 12 60 13 1 229 chain 51097 chr6 171115067 + 77766546 77767128 L1PA4 6152 + 5565 6151 58255 370 0 3 119 0 1 93 chain 138962 chr6 171115067 + 77770661 77772185 L1PA2 6032 + 4508 6032 26312 1092 0 2 425 2 0 5 chain 551015 chr6 171115067 + 77792194 77798213 L1PA2 6032 - 4 6029 1308 1794 0 2 2768 0 1 635 0 4 341 1 0 4 1 0 114 0 1 361 chain 31790 chr6 171115067 + 77812751 77813164 MLT2A1 477 + 0 477 81188 85 5 4 53 0 1 25 1 5 214 0 60 30 chain 6070 chr6 171115067 + 77836431 77836505 L1PA16 3655 + 225 299 184653 74 chain 90882 chr6 171115067 + 77867102 77868112 L1PA3long 6157 - 0 1014 39183 849 0 4 161 chain 118649 chr6 171115067 + 77868112 77869424 L1PA3long 6157 + 3786 5111 31557 830 0 12 371 0 1 111 chain 21058 chr6 171115067 + 77873605 77873857 AluY 311 + 40 293 123696 87 1 2 164 chain 32126 chr6 171115067 + 77876800 77877156 L1PA4 6152 - 1 357 80647 356 chain 27940 chr6 171115067 + 77920118 77920415 AluYa5 310 + 11 307 93203 121 1 0 175 chain 183296 chr6 171115067 + 77945162 77948935 HERVL-int 5654 + 0 5654 20648 170 0 1 696 1 6 165 7 9 90 10 15 524 5 6 64 1 1255 45 1350 1969 35 8 11 164 25 9 130 0 3 48 0 4 235 chain 25737 chr6 171115067 + 77948935 77949348 MLT2A1 477 + 0 396 101137 41 17 0 85 0 1 36 0 1 4 5 2 87 41 44 9 0 1 62 3 0 23 chain 20360 chr6 171115067 + 77954261 77954609 MSTA 426 - 0 426 126033 47 18 52 10 5 25 54 2 0 18 8 0 7 0 8 46 0 6 20 1 0 5 10 31 97 chain 536035 chr6 171115067 + 77961249 77967386 L1PA5 6144 + 5 6141 3442 1511 5 6 978 0 1 675 1 0 51 0 1 447 2 0 275 0 2 211 0 1 71 0 2 1250 6 0 654 chain 25031 chr6 171115067 + 77983451 77983821 THE1B 368 + 0 368 104632 172 11 10 20 2 0 99 0 1 4 27 27 35 chain 8582 chr6 171115067 + 77983836 77983938 THE1B-int 1605 + 17 119 167835 102 chain 47006 chr6 171115067 + 78024735 78025267 L1PA4 6152 - 340 873 61205 72 1 2 459 chain 26737 chr6 171115067 + 78025267 78025568 L1PA4 6152 + 5842 6143 97195 301 chain 15998 chr6 171115067 + 78036472 78036806 THE1B 368 - 19 361 138354 41 1 0 58 86 93 40 5 6 28 6 7 69 chain 17715 chr6 171115067 + 78064062 78064333 L1MA2 4263 - 593 848 133657 8 1 0 61 19 12 4 0 1 22 0 1 138 10 0 8 chain 9258 chr6 171115067 + 78090772 78090880 L1PA7 6471 + 6351 6459 164269 108 chain 10591 chr6 171115067 + 78091662 78091882 L1MA1 4479 + 3986 4190 157863 85 8 7 24 9 7 30 5 4 8 1 0 14 3 0 7 8 0 18 chain 27969 chr6 171115067 + 78106254 78106629 L1PA8 5853 - 0 370 93112 93 1 0 19 3 1 61 1 0 71 3 1 45 1 0 66 0 2 11 chain 27660 chr6 171115067 + 78116647 78117005 L1PA7 6471 + 6098 6467 94182 32 1 2 173 10 25 130 5 0 7 chain 84828 chr6 171115067 + 78117975 78118920 L1PA4 6152 + 5197 6143 41577 841 0 1 104 chain 15674 chr6 171115067 + 78136193 78136423 L1PA8 5853 + 5625 5853 139351 34 1 3 16 2 1 10 1 0 51 2 1 19 2 1 92 chain 3679 chr6 171115067 + 78142520 78142603 LTR34 700 + 258 353 212252 23 28 40 32 chain 3308 chr6 171115067 + 78160882 78160936 MER20 218 + 160 215 218803 15 6 7 33 chain 34432 chr6 171115067 + 78199260 78199656 L1PA5 6144 + 5745 6141 77015 65 0 1 218 1 0 112 chain 255609 chr6 171115067 + 78247346 78250636 L1PA8A 6298 + 2988 6290 15954 5 0 2 20 0 2 84 19 12 260 0 1 201 2 1 129 19 3 86 0 1 82 0 2 940 1 0 65 0 1 288 2 1 70 1 2 243 4 10 25 7 8 252 0 19 342 13 15 130 chain 3166 chr6 171115067 + 78270062 78270096 L1PA6 6164 - 3 37 221615 34 chain 398461 chr6 171115067 + 78301654 78306760 HERVL-int 5654 - 17 5654 10157 51 0 6 365 0 1 165 17 25 193 0 6 6 6 0 154 0 1 197 0 1 92 5 9 22 0 323 84 1 0 230 11 10 120 6 9 89 2 9 118 16 24 61 1 0 34 5 1 347 21 20 169 0 1 20 1 2 40 3 4 16 0 7 462 0 169 433 2 1 609 2 0 255 0 1 25 2 3 403 1 0 244 chain 26372 chr6 171115067 + 78311274 78311577 L1P2 5180 + 1849 2152 98524 303 chain 23307 chr6 171115067 + 78319151 78319410 L1PA3long 6157 - 0 259 114168 259 chain 12264 chr6 171115067 + 78322826 78323172 L1MA8 2339 - 102 413 151135 42 6 0 10 115 90 13 5 4 69 1 0 38 15 13 32 chain 206162 chr6 171115067 + 78323226 78325542 L1PA4 6152 - 1 2334 18778 364 0 1 504 0 4 148 0 7 516 0 1 254 0 4 530 chain 11818 chr6 171115067 + 78326383 78326512 L1PA5 6144 - 9 138 152950 129 chain 112000 chr6 171115067 + 78338087 78339434 L1PA7 6471 - 4 1355 33667 159 1 2 338 0 2 344 2 1 287 1 3 215 chain 38672 chr6 171115067 + 78344324 78344950 MER41B 635 + 0 612 71191 115 11 12 38 29 15 116 19 0 10 7 26 125 26 25 130 chain 36586 chr6 171115067 + 78364630 78365076 L1PA7 6471 - 1 453 74116 72 5 2 72 7 16 290 chain 30885 chr6 171115067 + 78367745 78368179 LTR7B 505 - 10 505 82709 53 2 1 54 0 1 24 1 0 82 0 2 26 3 27 12 12 38 60 11 21 94 chain 299656 chr6 171115067 + 78371962 78375714 HERVH-int 3825 - 0 3825 13443 487 8 218 56 0 1 1347 4 31 267 0 3 219 0 1 224 0 2 189 0 1 49 2 1 17 1 21 38 39 0 17 8 5 12 1 0 15 28 0 24 129 0 10 1 0 36 5 0 154 0 4 154 0 11 211 chain 6955 chr6 171115067 + 78375015 78375104 HERVH-int 3825 - 3245 3389 177780 10 1 0 25 0 56 53 chain 3217 chr6 171115067 + 78375104 78375143 HERVH-int 3825 - 3269 3364 188199 16 0 56 23 chain 31382 chr6 171115067 + 78375733 78376158 LTR7B 505 - 19 505 81848 44 2 1 52 0 1 26 1 0 82 0 2 26 3 27 12 12 38 60 0 10 105 chain 3497 chr6 171115067 + 78376287 78376326 MIR 256 - 118 157 215391 39 chain 18303 chr6 171115067 + 78389789 78390020 AluY 311 + 83 311 132067 43 7 0 137 0 4 44 chain 10365 chr6 171115067 + 78394939 78395111 L1MA1 4479 - 331 501 158848 6 1 0 37 2 0 27 1 0 19 11 13 68 chain 538789 chr6 171115067 + 78403981 78410458 L1PA4 6152 - 1 6150 3026 2637 1 0 936 1 2 372 1 0 960 319 8 402 17 0 181 0 1 36 0 1 35 1 0 578 chain 27800 chr6 171115067 + 78408890 78409208 AluYa5 310 - 4 310 93696 7 9 0 173 3 0 126 chain 73829 chr6 171115067 + 78426661 78427621 LTR5_Hs 974 - 0 974 46605 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 557029 chr6 171115067 + 78428401 78435123 HERVK-int 6823 - 241 6823 606 6 5 0 7 1 0 6 1 0 17 35 26 11 1 0 5 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 146 86 20 1 0 11 17 11 24 1 0 6 2 0 76 1 0 4 1 0 7 1 0 4 3 0 45 5 4 81 0 3 41 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 678 0 26 1377 0 5 1594 1 0 7 2 0 372 1 0 439 1 0 313 1 0 16 1 0 28 2 0 205 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 73698 chr6 171115067 + 78435123 78436083 LTR5_Hs 974 - 0 974 46677 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 8705 chr6 171115067 + 78438949 78439077 MER85 139 + 0 139 167167 91 8 19 29 chain 530920 chr6 171115067 + 78440347 78446372 L1PA3long 6157 - 1 6153 4090 1232 0 1 675 0 1 385 0 1 1277 1 2 120 13 3 349 0 3 413 0 1 789 0 128 153 0 1 104 1 0 49 1 0 157 0 1 158 0 1 148 chain 69114 chr6 171115067 + 78448186 78449076 L1PA8 5853 - 374 1273 48755 300 8 10 160 0 2 19 0 4 113 0 3 134 2 1 50 6 5 98 chain 26108 chr6 171115067 + 78449076 78449441 L1PA8 5853 + 5480 5845 99583 84 26 26 18 2 0 85 1 0 47 0 4 16 1 0 85 chain 172368 chr6 171115067 + 78451355 78453291 L1PA3long 6157 - 17 1953 21776 487 1 0 352 0 1 45 7 6 56 1 2 987 chain 227646 chr6 171115067 + 78453293 78455984 L1P1 4361 + 594 3277 17439 98 7 0 532 27 27 1926 5 4 96 chain 434405 chr6 171115067 + 78458554 78463969 L1PA7 6471 + 1016 6460 9204 197 0 4 45 22 22 211 0 3 767 1 0 370 1 3 278 1 0 209 0 4 270 0 1 80 11 6 17 5 4 16 0 3 142 5 9 417 3 0 163 1 2 313 3 10 80 6 10 187 0 1 47 0 1 47 1 0 80 13 19 569 0 1 608 0 1 74 1 2 6 2 0 6 4 3 136 chain 36536 chr6 171115067 + 78475313 78475729 L1PA4 6152 + 5550 5973 74188 292 0 7 124 chain 58186 chr6 171115067 + 78484931 78485868 L1PB1 5432 - 14 919 53878 14 1 0 13 1 0 21 1 0 12 10 12 14 1 0 5 7 5 9 9 0 17 3 0 14 2 1 44 1 0 18 1 0 51 2 0 9 5 1 14 1 0 10 1 0 7 16 11 11 1 2 105 19 8 191 1 7 87 0 2 73 0 2 115 chain 18094 chr6 171115067 + 78497574 78497798 L1PA4 6152 - 2351 2582 132396 54 1 6 49 4 6 116 chain 202342 chr6 171115067 + 78497798 78500115 L1PA4 6152 + 3817 6141 19035 990 1 0 462 0 1 622 0 2 45 1 2 155 0 4 41 chain 80030 chr6 171115067 + 78500529 78501411 L1PA2 6032 + 5149 6032 43576 383 0 1 499 chain 514261 chr6 171115067 + 78508211 78514317 L1PA3long 6157 - 0 6157 5751 1344 1 0 655 1 0 4 0 4 10 0 1 849 7 12 332 7 20 212 4 9 757 1 0 1111 19 16 6 0 3 95 0 7 131 0 1 196 22 40 342 chain 3175 chr6 171115067 + 78523233 78523267 L1PA6 6164 - 5 39 221426 34 chain 22868 chr6 171115067 + 78526186 78526442 L1PA5 6144 - 327 583 116239 256 chain 28607 chr6 171115067 + 78543349 78543761 L1PA8 5853 - 0 413 90707 93 1 0 19 2 1 19 0 1 12 22 21 8 1 0 71 3 1 45 1 0 38 0 3 52 0 4 25 chain 6113 chr6 171115067 + 78559835 78559901 L1PA5 6144 - 1664 1730 182092 66 chain 142353 chr6 171115067 + 78559901 78561510 L1PA5 6144 + 4531 6144 25751 96 0 1 103 1 0 837 0 2 240 0 2 332 chain 22539 chr6 171115067 + 78562631 78562936 AluSp 311 + 0 295 117852 23 2 0 232 2 3 30 9 0 7 chain 62431 chr6 171115067 + 78568645 78569406 L1PA8A 6298 - 12 779 51708 175 0 5 284 2 3 300 chain 532487 chr6 171115067 + 78571798 78577940 L1PA4 6152 + 0 6152 3913 135 7 0 320 2 0 30 3 4 518 10 1 288 0 1 146 0 1 70 0 2 1701 0 3 1136 0 4 278 0 5 95 1 0 229 1 0 330 1 9 586 1 0 232 0 6 22 chain 8926 chr6 171115067 + 78581156 78581317 L1PA16 3655 + 3483 3619 166003 94 3 0 9 1 0 4 22 6 7 5 0 16 chain 208999 chr6 171115067 + 78582299 78584650 L1PA3long 6157 - 0 2328 18569 497 37 15 249 1 0 1567 chain 32868 chr6 171115067 + 78612277 78612726 MER4A1 472 + 0 472 79426 213 1 0 22 4 7 24 7 27 126 0 1 52 chain 130168 chr6 171115067 + 78616868 78618381 L1PA4 6152 - 13 1517 28055 556 12 1 280 0 1 441 0 1 224 chain 50888 chr6 171115067 + 78618381 78618969 L1PA4 6152 + 2301 3183 58327 206 4 0 99 0 1 251 0 297 28 chain 103338 chr6 171115067 + 78618970 78620133 L1PA4 6152 + 3183 4347 35911 757 0 1 406 chain 24323 chr6 171115067 + 78620133 78620410 L1PA4 6152 + 4351 4629 108530 270 0 1 7 chain 20097 chr6 171115067 + 78623471 78623727 AluY 311 + 2 259 126836 45 10 11 201 chain 202351 chr6 171115067 + 78626497 78628708 L1PA2 6032 - 12 2226 19032 139 1 0 695 0 4 1376 chain 130771 chr6 171115067 + 78628708 78630135 L1PA2 6032 + 2358 3785 27913 1427 chain 10231 chr6 171115067 + 78637170 78637281 L1PA4 6152 - 1591 1702 158214 111 chain 140027 chr6 171115067 + 78637281 78638850 L1PA4 6152 + 4566 6141 26141 732 0 4 695 1 2 4 0 1 137 chain 28587 chr6 171115067 + 78656596 78657113 L1PA15 4387 - 21 511 90802 11 1 0 25 2 0 15 3 1 43 19 16 38 5 4 8 4 0 11 25 13 4 1 0 47 1 0 26 1 0 151 2 1 4 0 1 16 0 3 41 2 0 11 chain 65644 chr6 171115067 + 78689415 78690233 L1PA10 4194 - 2216 3037 50276 420 0 3 398 chain 14633 chr6 171115067 + 78690242 78690642 L1PA11 4918 + 4268 4629 142478 64 5 0 23 0 1 32 7 6 13 3 0 52 0 1 7 104 87 13 44 32 7 2 0 4 1 0 19 chain 527715 chr6 171115067 + 78700798 78706910 L1PA4 6152 - 9 6127 4428 628 0 11 10 29 0 539 0 1 553 0 1 4 1 0 383 0 1 73 0 1 671 0 2 60 5 6 2075 0 8 177 0 1 71 6 0 667 0 15 160 chain 67249 chr6 171115067 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78800537 MER4A 717 + 608 710 170887 9 0 1 86 0 1 5 chain 81812 chr6 171115067 + 78808686 78809774 HERVL-int 5654 - 4484 5653 42838 59 4 5 267 0 6 4 1 0 41 0 1 48 0 4 51 0 1 6 1 2 5 1 0 6 0 63 57 0 1 128 3 7 128 1 2 46 0 1 4 24 23 203 chain 24012 chr6 171115067 + 78837277 78837575 AluSx4 309 + 10 306 110260 281 2 0 15 chain 66497 chr6 171115067 + 78837650 78838383 L1PA3long 6157 + 5377 6152 49870 611 0 42 122 chain 41452 chr6 171115067 + 78842758 78843276 LTR12F 595 + 0 595 67345 103 6 1 33 0 82 376 chain 270412 chr6 171115067 + 78845442 78849946 HERVK22-int 3844 + 0 3844 15170 36 3 0 514 0 1 439 6 7 433 1 0 212 2 4 697 1 0 5 5 6 61 18 1 104 0 2 126 8 9 284 7 8 95 1 0 75 1 0 5 1 0 18 1 0 35 1 0 15 8 6 30 8 19 45 5 3 11 21 11 4 1 0 12 104 77 20 11 7 29 801 196 70 41 40 57 1 0 15 chain 12787 chr6 171115067 + 78867876 78868101 MER107 203 - 0 203 149107 15 1 2 17 2 5 14 2 6 72 32 2 70 chain 38098 chr6 171115067 + 78869977 78870471 LTR15 485 + 0 485 71988 11 2 0 6 0 1 277 6 5 42 9 0 115 4 6 22 chain 31067 chr6 171115067 + 78889533 78889914 MLT2A2 560 - 180 560 82406 197 1 0 183 chain 9375 chr6 171115067 + 78894828 78894930 AluSc5 308 - 11 113 163688 102 chain 166901 chr6 171115067 + 78909252 78911131 L1PA4 6152 + 4263 6151 22408 90 0 4 1132 1 3 42 0 1 204 1 0 4 0 1 196 0 2 209 chain 38063 chr6 171115067 + 78935950 78936366 L1PA3long 6157 - 0 417 72040 4 0 1 412 chain 169250 chr6 171115067 + 78936366 78938281 L1P1 4361 + 1480 3396 22146 42 0 1 158 0 1 28 1 0 604 1 0 940 0 1 141 chain 36231 chr6 171115067 + 78941278 78941694 L1PA4 6152 - 1 417 74587 395 0 3 5 3 0 13 chain 114217 chr6 171115067 + 78969458 78971308 THE1A-int 1579 - 0 1579 33023 9 1 2 162 0 1 120 5 9 112 10 9 74 0 14 46 1 8 234 21 23 272 21 20 23 303 3 166 2 4 268 chain 26559 chr6 171115067 + 78971308 78971660 THE1A 353 - 0 353 97810 182 1 2 59 7 6 64 4 5 35 chain 26427 chr6 171115067 + 78980490 78980781 L1PA3long 6157 + 5866 6157 98318 291 chain 87241 chr6 171115067 + 79067468 79068494 L1P1 4361 - 33 1057 40602 17 7 6 157 1 0 423 1 0 4 0 1 416 chain 138807 chr6 171115067 + 79068494 79070074 L1PA5 6144 + 4549 6140 26351 157 0 1 584 0 3 661 0 6 28 0 1 150 chain 114129 chr6 171115067 + 79080925 79082231 L1PA4 6152 + 4844 6152 33059 973 0 1 15 0 1 191 0 2 5 2 0 120 chain 6318 chr6 171115067 + 79092441 79092523 L1MA8 2339 - 563 645 182655 82 chain 4558 chr6 171115067 + 79109720 79109805 MER5A1 166 + 50 136 200131 28 19 20 38 chain 29320 chr6 171115067 + 79154968 79155293 L1PA4 6152 - 1 319 87436 140 7 0 178 chain 25987 chr6 171115067 + 79173530 79173823 AluY 311 + 2 296 100065 130 0 1 163 chain 539800 chr6 171115067 + 79176925 79183053 L1PA4 6152 + 1 6147 2846 58 1 4 515 1 0 74 0 1 1022 0 11 1936 0 4 56 2 0 1735 0 1 547 0 1 181 chain 13481 chr6 171115067 + 79187532 79187710 MER50B 698 - 32 209 146413 103 0 1 21 1 0 5 1 0 47 chain 5422 chr6 171115067 + 79190360 79190474 MLT1A0 366 - 253 366 190789 31 35 33 25 0 1 23 chain 21397 chr6 171115067 + 79205045 79205283 L1PA3long 6157 - 0 242 122521 51 0 4 187 chain 105091 chr6 171115067 + 79252666 79253801 L1PA2 6032 - 3 1138 35477 1135 chain 42381 chr6 171115067 + 79262343 79263103 L1PA15 4387 - 60 808 66179 12 3 1 44 20 17 14 36 31 21 1 0 57 1 0 26 1 0 16 0 2 56 0 1 25 1 0 7 0 3 38 0 6 3 6 0 15 1 0 42 2 0 44 0 1 16 4 0 17 2 0 9 1 0 25 4 5 98 14 15 26 13 16 39 chain 145276 chr6 171115067 + 79280690 79282498 L1PA6 6164 + 4341 6158 25282 27 0 4 171 0 1 105 2 0 118 0 1 16 11 12 157 8 10 267 0 1 87 5 9 34 1 3 180 1 0 459 3 0 12 1 0 143 chain 108141 chr6 171115067 + 79295391 79296648 HERVH-int 3825 + 1852 3120 34677 163 0 10 512 1 0 516 26 28 39 chain 8409 chr6 171115067 + 79297731 79297821 LTR7 482 + 0 90 168793 90 chain 26131 chr6 171115067 + 79299909 79300239 L1PA8A 6298 - 8 338 99478 166 1 0 102 7 8 54 chain 7164 chr6 171115067 + 79338578 79338795 L1PREC2 3366 - 291 478 176317 12 1 0 4 1 0 11 2 0 38 9 7 18 51 34 29 3 1 15 6 1 17 chain 28888 chr6 171115067 + 79350880 79351186 AluYg6 310 + 0 306 89499 306 chain 54016 chr6 171115067 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79450517 L1PA4 6152 - 9 2939 16285 488 1 2 430 2 1 494 0 5 368 0 4 223 0 1 188 0 1 725 chain 492977 chr6 171115067 + 79467870 79473859 L1PA3long 6157 + 19 6149 7225 5 0 1 130 29 26 121 79 80 196 0 1 120 0 7 368 1 2 165 2 0 199 1 0 747 1 3 116 0 1 69 0 1 205 1 2 257 0 4 1047 0 1 51 0 1 917 0 1 189 0 89 183 0 36 339 1 0 450 chain 204387 chr6 171115067 + 79490178 79492844 L1PBa1 4058 + 10 3427 18895 25 4 3 9 11 8 376 4 1 186 14 13 78 0 19 380 1 0 243 0 2 65 0 1 243 1 0 155 2 1 200 4 5 100 25 24 52 0 740 373 0 1 28 3 2 84 chain 286891 chr6 171115067 + 79492845 79496209 L1HS 6032 + 1 3367 14230 251 8 7 54 2 1 1992 1 4 144 1 2 911 chain 48627 chr6 171115067 + 79496325 79496966 L1PA8 5853 - 0 633 60012 93 1 0 19 2 1 39 8 0 6 1 7 9 1 0 69 2 0 46 1 0 344 chain 70745 chr6 171115067 + 79504058 79504847 L1PA3long 6157 + 5367 6157 48042 635 0 1 154 chain 113862 chr6 171115067 + 79507918 79509179 L1PA3long 6157 + 4895 6157 33130 338 5 6 918 chain 501195 chr6 171115067 + 79510835 79517813 L1PA7 6471 - 4 6466 6776 6 6 0 266 61 71 29 0 1 374 3 0 5 3 6 15 0 1 8 0 4 20 6 8 29 0 3 206 495 0 41 1 0 105 0 2 282 0 1 84 2 1 377 0 1 915 5 4 79 2 1 25 1 0 109 13 12 133 4 0 6 8 12 37 0 1 84 13 17 66 4 3 210 14 1 141 0 2 31 4 1 38 1 0 1 5 0 30 27 0 521 0 7 272 0 3 943 0 1 192 4 3 7 1 0 98 15 11 216 0 4 279 chain 40039 chr6 171115067 + 79511905 79512367 L1PA5 6144 - 16 477 69260 316 2 1 144 chain 341468 chr6 171115067 + 79527262 79531576 L1PA5 6144 + 0 6143 11854 135 6 20 144 61 62 218 0 1 118 1 2 166 0 1 141 0 1 4 1 0 56 15 15 85 9 0 66 1 0 685 0 1 319 82 1892 26 0 1 53 0 1 61 0 1 633 3 0 121 0 1 13 0 1 249 1 5 14 0 1 15 0 1 5 0 1 637 1 2 169 chain 106547 chr6 171115067 + 79548634 79549983 L1PA8 5853 + 4504 5852 35110 203 0 1 123 0 1 177 0 3 70 0 2 307 1 0 173 1 0 32 23 21 61 2 1 14 12 11 36 2 1 19 1 0 92 chain 17263 chr6 171115067 + 79557924 79558139 AluSc5 308 - 19 232 134887 23 3 1 139 1 0 23 0 1 26 chain 117709 chr6 171115067 + 79564452 79566128 HERVK14-int 1672 + 1 1657 31892 29 1 0 11 1 0 45 1 0 168 0 3 43 31 11 16 1 0 4 5 3 21 1 10 201 2 1 41 6 5 67 5 6 85 0 1 47 1 0 163 1 0 31 3 5 40 8 6 8 2 0 9 0 1 23 1 0 203 2 1 35 3 6 34 1 0 4 15 16 12 5 4 59 6 5 26 2 0 9 1 0 15 0 3 83 2 0 37 chain 21689 chr6 171115067 + 79568055 79568464 LTR14B 630 + 0 630 121432 23 2 1 29 0 179 42 32 53 33 0 10 30 15 25 117 39 41 47 chain 75251 chr6 171115067 + 79568504 79569472 LTR5_Hs 974 + 0 974 45895 289 0 1 177 0 1 188 1 0 163 47 52 103 chain 24384 chr6 171115067 + 79584518 79584946 L1PA17 2846 + 2268 2693 108176 219 1 0 9 26 30 9 1 0 55 37 34 8 1 0 9 11 10 42 chain 116910 chr6 171115067 + 79587231 79588829 L1P2 5180 + 2 1608 32155 107 24 10 31 1 0 97 6 5 168 0 1 30 5 1 45 20 18 15 0 1 205 17 13 38 2 1 5 1 0 125 0 4 5 0 25 476 0 5 175 chain 20097 chr6 171115067 + 79588837 79589074 L1PA5 6144 + 5904 6141 126838 237 chain 94021 chr6 171115067 + 79598987 79600142 L1PA7 6471 + 5305 6470 38346 293 1 5 41 8 7 47 0 2 696 4 10 8 0 1 43 2 0 12 chain 5725 chr6 171115067 + 79609781 79609849 MER3 215 - 53 121 187883 68 chain 367916 chr6 171115067 + 79630662 79635037 L1PA4 6152 + 6 6141 11157 168 0 1 1222 9 0 8 0 9 55 0 1 848 1 2 66 0 4 186 1 2 687 0 2 421 1 0 189 0 1753 233 2 0 43 0 1 141 1 0 93 chain 164122 chr6 171115067 + 79636560 79638960 L1MA2 4263 - 149 2565 22792 10 1 0 40 13 6 23 1 2 67 1 0 11 8 7 32 6 5 105 19 17 127 1 0 38 0 3 36 32 27 11 0 10 147 15 18 309 2 0 159 4 5 32 0 14 10 0 1 56 0 2 16 7 8 108 10 8 110 10 2 14 0 1 80 1 0 4 0 1 45 15 19 221 12 18 107 1 2 52 2 0 249 5 6 15 chain 537502 chr6 171115067 + 79681232 79687235 L1PA3long 6157 + 2 6140 3235 5 3 0 145 0 1 54 0 1 4 1 0 152 0 1 403 8 136 542 2 1 118 0 2 782 0 2 869 0 1 38 0 2 8 0 1 2737 0 1 132 chain 5102 chr6 171115067 + 79729847 79729950 MADE1 96 - 1 96 194060 29 29 20 7 0 1 38 chain 32214 chr6 171115067 + 79810715 79811228 MLT2A2 560 - 1 560 80496 42 52 56 48 0 11 56 6 38 128 13 12 168 chain 25796 chr6 171115067 + 79838394 79838848 L1PA13 3608 + 147 575 100894 16 1 0 14 0 1 22 28 18 73 2 0 125 1 0 12 6 5 12 2 0 16 6 2 18 1 0 17 6 4 14 2 0 13 1 0 46 chain 11130 chr6 171115067 + 79838905 79839209 L1PB1 5432 - 28 314 155699 13 1 0 21 1 0 24 2 0 11 4 3 5 2 0 30 13 1 16 1 0 44 96 98 20 chain 23460 chr6 171115067 + 79842662 79842932 L1PA7 6471 + 6198 6468 113316 270 chain 122172 chr6 171115067 + 79842934 79844526 L1PB1 5432 - 3749 5407 30323 169 0 1 96 2 12 288 1 2 366 1 7 113 0 35 230 0 1 22 12 24 292 chain 59870 chr6 171115067 + 79851764 79852479 L1PA5 6144 - 0 715 52887 715 chain 26410 chr6 171115067 + 79871104 79871477 THE1C 375 + 0 375 98375 186 19 18 127 10 14 4 1 0 26 chain 439331 chr6 171115067 + 79961062 79967148 L1PA7 6471 - 50 6455 9068 529 4 0 268 0 2 273 1 0 2716 0 1 111 0 2 80 0 1 691 114 101 70 15 15 13 30 30 16 9 18 179 33 59 127 22 5 24 61 82 101 19 19 11 8 84 31 36 45 48 0 23 36 203 401 73 14 0 120 chain 10028 chr6 171115067 + 79967290 79967418 MER41B 635 - 509 635 160437 33 1 0 43 1 0 50 chain 77325 chr6 171115067 + 79967433 79968495 MER41-int 2638 - 6 1066 44820 159 15 22 347 10 5 223 2 0 25 31 30 155 5 4 90 chain 12474 chr6 171115067 + 79974273 79974427 MER41B 635 - 0 154 150361 154 chain 8617 chr6 171115067 + 79981773 79982107 MLT1A 405 + 3 359 167647 40 20 19 52 175 200 40 2 0 5 chain 371684 chr6 171115067 + 79994399 79998730 L1P1 4361 + 4 4341 11033 964 0 1 194 0 18 1282 10 0 1687 2 1 154 1 0 23 2 1 12 chain 41176 chr6 171115067 + 80000000 80000499 L1PA5 6144 + 5624 6128 67670 93 0 1 51 2 7 109 1 0 243 chain 6397 chr6 171115067 + 80010419 80010498 LTR56 451 + 195 274 182049 79 chain 50588 chr6 171115067 + 80026481 80027162 Tigger1 2417 - 149 831 58592 19 10 7 228 0 2 162 6 9 160 0 1 30 3 0 33 0 1 30 chain 537781 chr6 171115067 + 80029355 80035491 L1PA4 6152 - 1 6149 3186 585 0 1 667 22 13 1265 5 0 1011 0 1 805 0 1 558 0 1 296 0 21 631 0 1 291 chain 8741 chr6 171115067 + 80047293 80047505 MLT1A0 366 + 102 324 166973 51 1 2 8 6 0 6 7 18 13 53 57 67 chain 482738 chr6 171115067 + 80056893 80062647 L1PA6 6164 + 410 6162 7633 255 4 7 351 1 0 409 0 1 201 0 1 520 0 1 161 10 8 818 0 2 23 0 2 15 2 0 152 0 1 927 0 1 35 0 2 273 0 1 72 7 9 14 36 18 622 0 4 846 chain 149373 chr6 171115067 + 80070659 80072370 L1PA5 6144 - 0 1712 24705 146 3 0 6 0 3 768 0 1 788 chain 59862 chr6 171115067 + 80072370 80073076 L1PA5 6144 + 3741 4453 52846 20 0 1 392 1 0 126 0 2 60 1 5 106 chain 357627 chr6 171115067 + 80074408 80078727 L1P1 4361 - 20 4357 11413 12 2 1 23 1 0 24 0 2 131 1 0 213 0 1 236 8 0 764 1 2 754 0 2 1566 0 4 35 13 14 42 0 1 328 5 8 109 8 22 43 chain 27342 chr6 171115067 + 80096637 80096991 THE1A 353 - 0 353 95136 40 12 13 98 1 0 91 1 0 111 chain 10035 chr6 171115067 + 80099497 80099611 L1PA2 6032 - 1470 1584 159977 114 chain 130569 chr6 171115067 + 80099611 80101062 L1PA2 6032 + 4581 6032 27950 1275 1 0 4 0 1 171 chain 34478 chr6 171115067 + 80108534 80108918 L1PA4 6152 + 5767 6151 76945 384 chain 4746 chr6 171115067 + 80119443 80119888 MER34B 572 + 8 517 197964 27 269 328 26 86 91 37 chain 8903 chr6 171115067 + 80150023 80150167 MER70A 477 + 321 470 166128 84 25 30 35 chain 113134 chr6 171115067 + 80152157 80153669 THE1B-int 1605 - 0 1602 33342 451 0 1 6 0 1 359 57 109 56 3 5 68 5 4 88 0 25 228 0 10 191 chain 19904 chr6 171115067 + 80153675 80154030 THE1B 368 - 12 368 127467 43 3 0 59 47 57 23 3 2 51 14 15 75 8 2 29 chain 24872 chr6 171115067 + 80154068 80154372 AluY 311 + 5 301 105497 62 8 0 234 chain 295456 chr6 171115067 + 80166569 80169853 L1PA3long 6157 - 2 3297 13676 1177 6 1 333 1 12 169 1 4 514 0 1 1079 0 1 4 chain 51776 chr6 171115067 + 80169856 80170474 L1P1 4361 + 615 1226 57768 77 7 0 534 chain 36181 chr6 171115067 + 80188738 80189146 L1PA5 6144 - 0 406 74656 5 2 0 401 chain 46791 chr6 171115067 + 80209414 80209921 L1PA3long 6157 - 0 506 61379 147 1 0 359 chain 16813 chr6 171115067 + 80239039 80239235 LTR71A 459 + 1 197 136084 196 chain 42171 chr6 171115067 + 80239334 80239827 L1PA5 6144 + 5647 6138 66435 244 2 0 81 1 0 4 0 1 161 chain 12858 chr6 171115067 + 80253781 80253964 MER107 203 + 16 202 148810 112 2 0 33 0 2 13 9 12 14 chain 18953 chr6 171115067 + 80259101 80259351 Tigger3c 601 + 11 490 130216 22 1 4 42 0 226 185 chain 514813 chr6 171115067 + 80287373 80293483 L1PA6 6164 + 4 6140 5690 233 0 2 279 0 2 47 1 0 50 6 1 533 0 10 8 0 3 5 17 4 242 1 0 42 0 4 744 0 2 117 5 6 236 3 9 557 0 3 47 0 2 252 0 1 4 1 0 670 0 5 923 0 1 267 0 3 78 0 1 436 0 1 306 chain 9238 chr6 171115067 + 80295952 80296063 MER30 238 + 113 224 164359 111 chain 12293 chr6 171115067 + 80298737 80298895 MER2 342 - 80 254 151035 31 0 16 127 chain 22788 chr6 171115067 + 80299828 80300141 L1PA16 3655 + 3053 3377 116645 36 2 1 33 3 4 22 0 14 41 1 0 86 2 0 87 chain 520994 chr6 171115067 + 80367870 80374017 L1PA6 6164 - 5 6164 5055 12 1 0 98 8 12 548 0 1 172 0 4 260 0 1 402 1 0 723 0 1 618 0 3 41 0 6 67 0 1 857 13 0 604 1 0 63 0 1 575 0 3 233 0 1 566 11 12 86 3 4 184 chain 12654 chr6 171115067 + 80392448 80392596 L1PA6 6164 + 5680 5833 149628 64 0 5 84 chain 15226 chr6 171115067 + 80392596 80392766 L1PA6 6164 + 5834 6004 140699 170 chain 13236 chr6 171115067 + 80392770 80392924 L1PA6 6164 + 6010 6162 147333 144 2 0 8 chain 218439 chr6 171115067 + 80401074 80403474 L1PA4 6152 - 1 2401 17973 2400 chain 82544 chr6 171115067 + 80450194 80451169 L1PA7 6471 + 5494 6470 42521 127 1 0 517 0 1 190 0 1 140 chain 13728 chr6 171115067 + 80455037 80455221 THE1B 368 - 0 181 145512 75 7 6 95 2 0 5 chain 11875 chr6 171115067 + 80456041 80456189 L1PA8 5853 - 0 146 152723 93 1 0 19 2 1 33 chain 25892 chr6 171115067 + 80478488 80478843 THE1B 368 - 0 368 100474 47 7 15 112 0 2 24 1 0 102 5 6 18 0 5 24 2 0 13 chain 28681 chr6 171115067 + 80479584 80479887 AluYg6 310 + 0 303 90403 303 chain 50809 chr6 171115067 + 80516291 80516989 LTR12 884 + 0 869 58430 25 1 0 37 0 4 31 0 107 27 41 0 105 1 2 37 6 4 171 0 103 216 chain 10121 chr6 171115067 + 80522224 80522337 L1PA7 6471 + 6340 6454 159987 27 0 1 86 chain 30477 chr6 171115067 + 80525459 80525901 MLT2A1 477 + 0 477 83477 171 18 16 14 0 3 179 23 57 37 chain 23260 chr6 171115067 + 80526942 80527251 AluY 311 + 0 293 114384 133 29 13 147 chain 4410 chr6 171115067 + 80536541 80536592 MADE1 96 + 45 96 201801 51 chain 7481 chr6 171115067 + 80567741 80567826 HSMAR1 1287 - 1202 1287 174266 85 chain 15746 chr6 171115067 + 80581145 80581340 L1PA7 6471 + 6264 6459 139121 195 chain 5732 chr6 171115067 + 80590989 80591077 L1MA2 4263 + 22 113 187818 30 9 12 49 chain 7503 chr6 171115067 + 80597120 80597421 MSTD 398 + 69 369 174137 39 186 186 31 1 0 44 chain 73461 chr6 171115067 + 80600454 80601494 MER11A 1151 - 0 1151 46807 40 3 0 98 31 32 60 0 1 37 17 48 145 5 6 145 0 1 97 0 1 146 4 0 64 1 0 47 8 0 6 8 0 23 0 99 55 chain 3062 chr6 171115067 + 80607659 80607693 MADE1 96 - 53 87 223779 34 chain 22548 chr6 171115067 + 80613556 80613820 AluSc 308 - 44 308 117811 264 chain 190228 chr6 171115067 + 80665656 80667789 L1PA5 6144 - 2182 4317 19992 803 0 1 851 0 1 479 chain 190619 chr6 171115067 + 80667789 80669956 L1PA5 6144 + 3965 6142 19989 673 1 0 57 0 13 408 1 0 871 4 0 12 0 7 129 4 0 7 chain 21916 chr6 171115067 + 80698276 80698747 MLT2A1 477 + 0 477 120561 169 4 1 11 4 5 14 147 113 58 0 4 10 4 0 15 0 42 35 chain 5285 chr6 171115067 + 80698479 80698548 MLT2A1 477 + 313 385 192166 33 0 3 36 chain 7736 chr6 171115067 + 80701281 80701376 MLT1B 390 + 271 366 172680 95 chain 15887 chr6 171115067 + 80703026 80703228 MSTB-int 1649 + 469 670 138692 78 1 0 123 chain 25878 chr6 171115067 + 80707251 80707611 MER75 514 + 160 514 100535 18 7 0 300 10 11 25 chain 494238 chr6 171115067 + 80757807 80764229 L1PA6 6164 - 3 6162 7158 6 2 0 80 15 16 227 0 1 1709 0 9 87 9 5 740 0 2 5 1 0 84 308 0 22 0 3 221 0 14 402 1 0 83 0 3 116 0 1 915 19 18 19 15 15 172 0 9 213 0 25 429 2 1 309 0 1 80 14 0 117 chain 10910 chr6 171115067 + 80780395 80780564 MER2B 336 + 162 335 156552 110 20 24 39 chain 26138 chr6 171115067 + 80794928 80795241 AluY 311 + 0 311 99445 11 2 0 121 0 1 41 3 0 92 0 2 43 chain 41224 chr6 171115067 + 80827182 80827670 MER9a3 513 + 0 506 67621 18 0 2 237 0 18 181 2 0 50 chain 321382 chr6 171115067 + 80829587 80834384 L1PA6 6164 - 2 3784 12541 64 0 4 1536 5 6 187 0 8 204 0 3 465 0 2 83 1042 0 409 7 8 650 0 6 67 0 2 78 chain 73121 chr6 171115067 + 80832139 80833118 MER11A 1151 - 2 997 46969 161 4 5 11 1 0 32 4 5 14 0 1 56 10 43 12 0 1 116 7 8 110 19 0 35 0 1 94 0 1 149 4 0 140 chain 267258 chr6 171115067 + 80848012 80850989 L1PA3long 6157 - 0 2970 15328 449 9 0 1468 0 1 946 0 1 105 chain 3311 chr6 171115067 + 80855308 80855343 MamRep1527 640 - 305 340 218763 35 chain 114163 chr6 171115067 + 80858419 80859705 L1PA3long 6157 + 4879 6157 33044 250 2 1 253 0 1 142 0 1 181 9 0 449 chain 11319 chr6 171115067 + 80868882 80869021 L1PA5 6144 + 6007 6144 155000 4 0 1 125 3 0 7 chain 38287 chr6 171115067 + 80897234 80897851 L1PA15 4387 + 3709 4309 71728 90 26 26 13 4 2 42 1 0 4 6 4 42 1 0 170 5 4 25 1 0 49 6 5 22 4 0 10 1 0 50 6 3 39 chain 75557 chr6 171115067 + 80921423 80922506 MER11A 1151 - 0 1151 45743 170 1 2 10 5 0 32 1 2 14 0 1 36 18 0 22 44 27 145 5 6 102 0 1 42 0 1 14 0 6 77 0 1 79 0 1 62 10 6 64 1 0 74 10 109 45 chain 29518 chr6 171115067 + 80939745 80940054 AluYk12 309 - 0 309 86571 309 chain 239430 chr6 171115067 + 80948319 80951332 L1PA5 6144 - 0 5335 16800 250 0 19 10 19 0 488 1 0 749 1 0 23 43 0 167 25 5 139 1 0 5 1 4 270 1 2419 228 0 1 147 0 1 48 9 0 210 6 5 12 25 0 135 chain 13508 chr6 171115067 + 80965946 80966176 Tigger3a 397 - 27 258 146334 14 35 38 14 9 2 7 0 5 151 chain 38614 chr6 171115067 + 81000353 81000911 MER41A 554 - 0 554 71275 83 7 10 26 8 0 124 28 28 190 5 6 87 chain 79633 chr6 171115067 + 81000929 81005463 MER41-int 2638 - 15 1204 43763 210 0 5 210 0 1 28 4 1 65 1 0 6 4 5 64 4 1 31 3 5 34 0 4 43 2 0 34 2 0 143 1 0 65 1 0 70 3342 0 40 8 0 82 0 1 8 6 10 23 chain 72293 chr6 171115067 + 81003856 81004914 MER11A 1151 + 7 1151 47336 48 0 99 74 1 0 62 8 4 33 0 2 55 1 0 4 0 1 45 9 10 90 10 11 28 0 1 107 10 11 118 0 26 26 43 0 58 0 1 10 5 6 34 1 0 12 0 1 132 0 1 34 chain 8945 chr6 171115067 + 81009166 81009280 MER41A 554 - 0 118 165899 41 1 0 40 0 5 32 chain 198807 chr6 171115067 + 81020414 81023986 L1PA11 4918 - 358 3251 19298 6 1 0 13 67 53 16 2 0 44 2 0 11 3 4 18 1 0 29 4 0 34 2 1 58 343 0 86 0 6 8 1 2 75 0 7 149 7 9 173 9 8 172 27 30 7 0 1 25 1 0 112 2 0 133 1 2 227 4 0 320 0 3 117 1 0 62 4 5 182 3 5 15 20 8 59 325 6 158 13 2 33 1 0 158 0 1 74 9 21 145 chain 7057 chr6 171115067 + 81037195 81037277 THE1D 372 - 34 116 177054 82 chain 25555 chr6 171115067 + 81061541 81061839 AluSp 311 - 15 310 101951 262 4 1 32 chain 74697 chr6 171115067 + 81074538 81075606 MER11A 1151 - 4 1151 46162 74 15 0 5 0 15 132 3 4 33 18 0 41 25 8 145 5 6 93 3 15 37 0 1 23 0 1 70 0 1 115 0 2 32 4 0 66 9 8 47 0 100 73 chain 246803 chr6 171115067 + 81080138 81083694 L1PB1 5432 - 9 3929 16408 19 1 0 13 1 0 21 1 0 26 7 5 7 1 0 5 3 1 18 14 6 6 2 0 16 2 1 41 2 1 16 2 1 52 22 17 5 1 0 8 1 0 23 9 0 8 94 9 469 0 1 206 22 26 185 0 1 61 2 3 154 1 0 23 0 1 186 3 2 9 0 9 32 0 11 106 0 2 46 4 18 621 0 1 91 14 14 216 0 1 83 0 1 10 14 9 6 7 0 43 11 17 99 0 445 10 3 6 59 1 0 312 chain 29627 chr6 171115067 + 81093771 81094532 MLT2A1 477 + 1 477 86131 137 0 1 30 1 5 13 0 3 5 3 2 82 332 1 44 1 0 38 26 66 49 chain 457277 chr6 171115067 + 81094532 81100480 HERVL-int 5654 + 0 5654 8501 108 16 17 32 25 8 117 0 1 665 1 5 171 0 1 119 1 0 4 0 1 56 0 19 15 317 0 255 0 2 210 4 8 139 1 3 300 1 0 4 0 1 610 1 0 350 0 4 103 8 1 278 2 5 331 2 0 615 0 1 206 1 7 130 0 3 321 1 2 257 0 3 100 4 0 19 1 0 47 chain 23977 chr6 171115067 + 81100480 81100894 MLT2A1 477 + 0 394 110468 139 0 1 29 1 5 115 85 58 33 2 4 10 chain 4086 chr6 171115067 + 81111293 81111339 THE1D 372 + 326 372 206134 46 chain 494578 chr6 171115067 + 81115556 81121808 L1PA6 6164 - 10 6164 7137 138 7 1 8 0 7 97 2 0 5 0 2 234 30 0 544 0 1 468 1 0 180 0 3 408 0 1 479 8 6 344 6 0 11 10 1 353 6 0 397 56 12 121 2 3 174 32 9 548 0 3 144 0 2 231 2 1 155 0 8 9 9 1 140 0 4 213 1 2 118 2 1 281 3 4 12 26 32 16 0 1 221 chain 459683 chr6 171115067 + 81137599 81143329 L1PA7 6471 - 1 5961 8413 52 2 1 43 0 9 323 0 1 339 0 2 79 2 0 628 9 8 309 0 2 108 8 15 548 0 1 17 1 2 217 0 43 5 0 1 1196 0 2 63 6 133 352 0 13 354 0 3 78 0 1 176 1 0 4 0 1 25 45 64 41 0 1 463 0 5 60 5 4 101 3 0 67 chain 26883 chr6 171115067 + 81188463 81188747 AluYa5 310 + 26 310 96694 284 chain 16322 chr6 171115067 + 81192056 81192280 MER30 238 + 0 237 137430 104 6 20 15 1 0 98 chain 25476 chr6 171115067 + 81192554 81192947 LTR7 482 - 36 482 102329 124 0 2 14 0 1 8 1 32 42 1 12 16 18 19 10 21 28 138 chain 255779 chr6 171115067 + 81194029 81197423 HERVH-int 3825 - 705 3825 15945 39 26 28 675 1 0 94 320 0 259 0 10 299 4 31 758 0 3 143 0 3 13 8 11 55 2 1 42 1 0 25 3 0 9 6 18 19 6 5 10 1 0 38 5 0 8 1 0 524 chain 28735 chr6 171115067 + 81194874 81195184 AluYa5 310 + 0 307 90186 132 3 0 175 chain 8126 chr6 171115067 + 81197440 81197530 LTR7 482 - 15 105 170354 90 chain 10238 chr6 171115067 + 81200111 81200282 MER20 218 + 37 213 159430 43 8 11 65 7 8 14 6 7 28 chain 536213 chr6 171115067 + 81201993 81208013 L1PA3long 6157 - 0 6157 3418 2552 0 5 2435 0 3 256 1 129 611 11 0 6 12 24 136 chain 268654 chr6 171115067 + 81221725 81225107 HERVH-int 3825 - 0 3825 15254 495 0 210 93 4 5 159 0 12 302 1 0 4 0 1 230 0 1 1014 0 1 7 1 0 4 1 2 59 15 0 317 7 0 7 7 14 93 3 8 7 2 0 15 0 2 12 31 315 19 70 15 69 1 0 333 chain 29606 chr6 171115067 + 81225123 81225520 LTR7 482 - 14 482 86196 162 1 2 27 0 31 21 0 1 109 8 46 69 chain 22401 chr6 171115067 + 81260565 81260892 MER83B 357 - 40 357 118478 144 1 0 16 1 0 7 22 5 9 0 9 127 chain 538213 chr6 171115067 + 81277662 81283661 L1PA3long 6157 - 5 6157 3120 323 0 21 1560 0 1 1075 0 1 2265 1 129 279 0 1 342 3 4 151 chain 106917 chr6 171115067 + 81306411 81307888 L1PA10 4194 - 33 1446 34998 14 1 0 6 39 0 24 15 11 61 1 0 186 14 0 354 0 3 66 1 0 65 7 8 230 1 0 6 0 5 158 14 0 9 0 1 17 0 1 188 chain 487198 chr6 171115067 + 81321900 81327925 L1PA6 6164 + 56 6162 7472 89 0 15 227 28 29 33 19 0 118 9 8 107 0 1 104 0 17 169 2 0 58 0 1 147 0 1 539 0 1 28 0 18 58 5 7 492 1 2 642 0 24 124 0 6 117 0 1 52 0 1 224 0 3 179 4 0 5 0 3 509 6 10 143 0 4 575 13 14 351 0 4 52 0 1 571 0 1 215 4 0 6 chain 85692 chr6 171115067 + 81344390 81345387 LTR5A 1029 + 0 1029 41272 13 0 2 43 0 5 71 0 13 200 0 1 55 1 12 614 chain 142084 chr6 171115067 + 81354745 81356727 L1PB1 5432 + 3380 5427 25807 79 15 0 107 0 2 168 12 4 221 7 8 208 0 1 100 0 1 134 0 8 102 0 4 78 0 4 12 3 0 176 2 1 280 29 122 20 2 1 16 1 0 33 0 1 10 1 0 15 23 12 10 11 9 4 1 0 15 2 0 24 2 1 33 1 0 18 2 0 5 chain 229166 chr6 171115067 + 81359668 81362697 HERVH-int 3825 - 705 3825 17348 90 7 11 222 1 0 155 0 1 156 6 0 187 0 1 143 33 0 144 0 4 203 0 3 5 3 0 218 5 0 120 0 2 24 9 0 205 15 0 40 7 0 100 6 7 87 1 0 63 1 0 88 0 3 58 0 265 25 2 1 14 57 2 107 52 0 33 1 0 51 3 0 282 chain 29705 chr6 171115067 + 81362711 81363101 LTR7 482 - 12 482 85807 146 0 10 37 0 31 21 0 1 109 8 46 69 chain 2726 chr6 171115067 + 81365030 81365070 Tigger5 388 - 35 73 229787 24 1 0 10 1 0 4 chain 5370 chr6 171115067 + 81367850 81367912 FRAM 166 - 0 62 191304 62 chain 50663 chr6 171115067 + 81373536 81374113 L1PA4 6152 + 5574 6152 58525 243 0 1 334 chain 18607 chr6 171115067 + 81381290 81381501 L1PA4 6152 + 5931 6143 131201 119 0 1 92 chain 36216 chr6 171115067 + 81387657 81388231 LTR8 732 - 109 716 74607 41 61 57 36 15 26 129 1 0 114 8 20 37 1 7 115 0 9 16 chain 388489 chr6 171115067 + 81394382 81399063 L1PA4 6152 + 1436 6143 10499 208 4 6 107 0 1 419 0 6 137 1 2 46 1 0 4 0 1 729 0 6 65 1 2 240 0 1 1219 1 0 192 6 11 460 0 4 841 chain 11420 chr6 171115067 + 81437430 81437566 L1PA7 6471 + 6328 6466 154602 128 0 2 8 chain 11997 chr6 171115067 + 81454676 81454812 L1PA3long 6157 - 4822 4958 152217 136 chain 16602 chr6 171115067 + 81454822 81455003 L1PA3long 6157 - 4971 5152 136665 181 chain 24548 chr6 171115067 + 81455003 81455273 L1PA3long 6157 - 5154 5424 106275 270 chain 431356 chr6 171115067 + 81455273 81460091 L1PA3long 6157 + 1323 6157 9285 821 0 6 134 0 1 1006 0 1 950 0 1 1082 0 1 411 0 1 269 1 2 93 0 4 51 chain 11057 chr6 171115067 + 81488144 81488360 L1MA5A 2387 + 1427 1659 155983 65 63 78 50 0 1 38 chain 27599 chr6 171115067 + 81489530 81489853 L1PA4 6152 - 0 331 94347 13 0 8 92 0 1 36 1 0 181 chain 181591 chr6 171115067 + 81492767 81494874 L1P1 4361 + 5 2128 20837 13 0 6 705 0 1 326 0 2 513 0 3 339 0 4 211 chain 4641 chr6 171115067 + 81503219 81503292 MER97c 529 + 426 505 199181 9 0 5 13 2 3 49 chain 123169 chr6 171115067 + 81504940 81506313 L1PA3long 6157 - 0 1374 29986 259 13 12 191 0 1 367 0 1 543 chain 78880 chr6 171115067 + 81506313 81507185 L1PA3long 6157 + 3913 4785 44118 872 chain 69645 chr6 171115067 + 81508991 81509893 L1PA8 5853 - 0 892 48552 80 8 5 5 1 0 22 2 1 36 6 5 20 1 0 71 2 0 46 1 0 348 0 1 164 0 1 38 2 0 49 chain 32079 chr6 171115067 + 81510222 81510572 L1PA2 6032 - 15 365 80723 350 chain 299406 chr6 171115067 + 81510572 81513816 L1PA2 6032 + 2392 5639 13459 732 0 3 2512 chain 11582 chr6 171115067 + 81516788 81516917 L1PA4 6152 + 6013 6142 153963 129 chain 8834 chr6 171115067 + 81520986 81521087 L1PA3long 6157 + 6056 6157 166473 101 chain 479639 chr6 171115067 + 81530480 81535862 L1PA3long 6157 + 19 6155 7740 75 0 526 156 0 128 2262 0 2 90 6 5 105 0 97 761 4 0 213 0 1 864 0 4 501 0 1 345 chain 101565 chr6 171115067 + 81538022 81539195 L1PA4 6152 - 1 1178 36377 849 0 4 324 chain 67776 chr6 171115067 + 81539195 81539953 L1PA4 6152 + 4208 4966 49149 758 chain 18810 chr6 171115067 + 81550820 81551037 L1PA8A 6298 - 431 648 130650 217 chain 2752 chr6 171115067 + 81551043 81551077 L1PA8 5853 + 5820 5853 229458 4 1 0 29 chain 538239 chr6 171115067 + 81557458 81563482 L1PA3long 6157 + 0 6152 3115 153 0 1 627 0 128 537 1 0 4706 chain 24341 chr6 171115067 + 81566751 81567029 L1PA5 6144 - 0 278 108412 278 chain 92632 chr6 171115067 + 81579925 81581213 L1PB1 5432 + 3780 5082 38775 111 7 8 91 1 2 61 7 12 22 1 0 21 1 0 83 1 2 241 11 12 183 2 0 132 1 2 41 0 9 180 5 4 85 chain 120639 chr6 171115067 + 81585710 81587253 L1PA8 5853 - 0 1547 30822 82 12 11 17 1 0 51 5 4 9 1 0 71 2 0 46 1 0 380 0 2 96 0 2 23 1 7 41 1 3 507 4 5 154 4 2 34 chain 2698 chr6 171115067 + 81587516 81587577 LTR12B 2670 - 149 206 230243 16 6 7 4 1 0 16 4 0 14 chain 81205 chr6 171115067 + 81616156 81617085 L1PA5 6144 + 5214 6144 43083 80 2 0 587 0 1 209 0 2 51 chain 64457 chr6 171115067 + 81621518 81622228 L1PA3long 6157 - 0 710 50819 710 chain 85031 chr6 171115067 + 81622228 81623166 L1PA3long 6157 + 4470 5408 41501 938 chain 154869 chr6 171115067 + 81626397 81628095 L1PA3long 6157 - 8 1706 23984 1698 chain 240492 chr6 171115067 + 81628095 81630667 L1HS 6032 + 1741 4313 16743 2572 chain 11953 chr6 171115067 + 81641508 81641814 L1PB1 5432 - 40 315 152394 23 2 1 22 67 50 16 4 3 40 1 0 16 2 1 52 2 0 9 2 0 3 2 0 7 5 7 7 6 0 18 chain 21567 chr6 171115067 + 81687361 81687639 AluY 311 + 38 309 121890 88 7 0 183 chain 34458 chr6 171115067 + 81690858 81691396 LTR7B 505 + 0 495 76982 141 5 15 38 72 0 33 2 0 5 2 25 184 14 13 20 0 1 5 2 0 15 chain 20637 chr6 171115067 + 81705934 81706188 AluY 311 + 51 305 125162 72 1 0 9 0 1 172 chain 15627 chr6 171115067 + 81714228 81714503 THE1C 375 + 0 336 139501 108 8 58 19 1 2 10 45 55 84 chain 28251 chr6 171115067 + 81714678 81715057 MLT2A1 477 + 0 395 92104 142 0 1 26 1 5 123 4 11 32 0 1 41 0 3 10 chain 123565 chr6 171115067 + 81715243 81716806 THE1A-int 1579 + 2 1574 29852 492 1 2 159 1 0 376 0 2 342 4 11 188 chain 4486 chr6 171115067 + 81719121 81719209 L1MD1 2063 - 1730 1818 200959 12 18 19 53 1 0 4 chain 528640 chr6 171115067 + 81721817 81727928 L1PA4 6152 - 9 6152 4341 43 0 4 791 0 8 143 0 5 662 0 2 50 1 2 73 0 4 415 0 1 259 0 1 1095 0 2 156 0 3 1187 0 1 375 1 0 216 0 1 644 chain 131797 chr6 171115067 + 81756537 81758006 L1PA4 6152 - 912 2383 27672 575 0 1 301 0 1 593 chain 76417 chr6 171115067 + 81758012 81758902 L1PA4 6152 + 5253 6143 45251 41 1 0 523 1 2 324 chain 22597 chr6 171115067 + 81768877 81769233 THE1B 368 + 0 368 117597 18 0 1 146 67 78 125 chain 11791 chr6 171115067 + 81771896 81772040 MER61-int 3695 - 3497 3642 153092 134 0 1 10 chain 41640 chr6 171115067 + 81772722 81773213 MER9a1 513 + 0 513 67107 244 1 23 246 chain 9902 chr6 171115067 + 81779296 81779408 L1PA5 6144 + 6031 6143 161059 112 chain 5151 chr6 171115067 + 81788905 81788962 L1PA4 6152 + 6078 6135 193536 57 chain 2703 chr6 171115067 + 81801492 81801725 L1ME1 1623 - 460 718 230199 30 157 183 12 18 17 16 chain 527239 chr6 171115067 + 81821782 81827900 L1PA5 6144 - 5 6141 4474 843 0 1 284 0 7 650 1 5 318 0 1 105 1 0 646 1 0 973 1 0 1154 0 3 176 0 1 294 0 3 417 0 1 53 55 69 10 14 0 122 chain 25260 chr6 171115067 + 81832973 81833256 L1PA4 6152 - 8 290 103418 148 1 0 134 chain 29865 chr6 171115067 + 81833695 81834043 L1P2 5180 - 8 354 85228 37 1 0 45 1 0 264 chain 68937 chr6 171115067 + 81834253 81835012 L1PA3long 6157 + 5388 6147 48844 759 chain 124553 chr6 171115067 + 81844876 81846418 L1PA7 6471 + 4909 6464 29523 318 1 0 66 20 34 134 0 1 154 1 0 92 5 6 109 0 3 444 12 8 186 chain 21812 chr6 171115067 + 81857055 81857316 L1PA7 6471 - 1 261 120970 12 1 0 248 chain 20618 chr6 171115067 + 81862674 81862995 THE1B 368 - 23 368 125232 102 35 45 28 1 0 105 6 21 44 chain 33331 chr6 171115067 + 81868035 81868638 L1PB2 3958 + 3275 3838 78685 32 2 0 37 8 6 13 17 11 65 7 5 12 11 8 69 0 1 11 2 0 6 1 0 7 16 12 47 7 6 23 0 1 34 1 0 74 2 0 20 16 0 63 chain 20339 chr6 171115067 + 81896855 81897090 L1PA4 6152 - 66 305 126107 186 0 4 49 chain 3693 chr6 171115067 + 81911103 81911142 THE1B-int 1605 + 580 619 212045 39 chain 53428 chr6 171115067 + 81917760 81918356 L1PA3long 6157 - 1829 2426 56483 383 0 1 213 chain 166163 chr6 171115067 + 81918356 81920181 L1PA3long 6157 + 4324 6149 22497 1825 chain 21637 chr6 171115067 + 81933051 81933325 L1PA4 6152 + 5863 6136 121627 151 12 11 111 chain 51340 chr6 171115067 + 81949335 81949925 L1PA4 6152 - 1 594 58074 267 14 0 8 0 17 301 chain 44201 chr6 171115067 + 81953097 81953621 L1PA7 6471 + 5944 6465 63943 515 3 0 6 chain 33388 chr6 171115067 + 81959388 81960094 L1PB1 5432 - 5 596 78590 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 9 52 41 12 7 6 41 1 0 16 2 1 46 22 16 10 2 1 9 1 0 24 106 20 258 chain 58183 chr6 171115067 + 81965267 81966019 L1PA7 6471 - 8 760 53882 65 20 6 16 0 12 205 1 2 363 1 2 81 chain 7935 chr6 171115067 + 81966028 81966117 L1P1 4361 + 2619 2708 171413 89 chain 83653 chr6 171115067 + 81966401 81967481 L1P3 4156 + 3027 4102 42053 472 3 4 14 0 2 7 3 2 229 0 1 75 1 0 159 26 19 91 chain 8896 chr6 171115067 + 81976058 81976165 L1PA6 6164 + 6048 6156 166155 74 0 1 33 chain 88089 chr6 171115067 + 81977825 81978877 L1PA6 6164 - 2 1054 40341 338 0 1 14 8 7 692 chain 125140 chr6 171115067 + 81978881 81980377 L1PA6 6164 + 3605 5097 29346 469 7 8 567 3 0 141 1 0 253 1 0 54 chain 7706 chr6 171115067 + 81980875 81980990 L1MA9 1812 + 81 197 172895 44 10 11 61 chain 133874 chr6 171115067 + 81993658 81995150 L1PA4 6152 - 1947 3440 27192 38 1 2 1453 chain 174043 chr6 171115067 + 81995150 81997107 L1PA4 6152 + 4194 6151 21587 1957 chain 148520 chr6 171115067 + 82044909 82046597 L1PA5 6144 - 0 1692 24815 148 1 0 390 0 1 75 0 1 743 0 2 229 0 1 102 chain 62469 chr6 171115067 + 82046662 82047451 LTR17 781 + 0 781 51689 192 0 1 106 10 0 27 2 3 63 8 7 374 0 1 7 chain 345964 chr6 171115067 + 82049126 82053260 HERV17-int 4347 + 12 4347 11727 14 2 1 51 1 0 35 2 0 26 1 0 138 1 0 104 10 13 99 0 1 133 0 1 96 0 1 186 1 4 120 11 9 125 0 3 175 2 0 15 0 1 112 4 0 212 0 1 510 14 201 712 0 1 4 1 0 31 0 1 243 0 12 769 0 1 174 chain 6094 chr6 171115067 + 82053574 82053644 LTR17 781 + 0 70 184465 70 chain 29201 chr6 171115067 + 82053644 82054076 LTR7Y 441 - 0 441 88043 63 0 1 53 0 1 91 56 72 57 9 0 103 chain 10803 chr6 171115067 + 82054709 82054825 L1PA3long 6157 - 1107 1223 155540 116 chain 98469 chr6 171115067 + 82054825 82055920 L1PA3long 6157 + 5054 6140 37169 654 9 0 432 chain 288282 chr6 171115067 + 82056560 82060443 HERVH-int 3825 - 0 3825 14143 225 7 12 250 8 218 39 9 11 1043 3 13 298 8 35 150 0 7 82 0 1 166 0 17 231 0 3 243 0 3 12 0 2 7 0 1 57 2 1 22 189 0 20 14 11 14 46 1 26 112 0 27 10 8 37 5 0 309 0 11 212 chain 2558 chr6 171115067 + 82059533 82059566 HERVH-int 3825 - 3095 3126 232384 5 2 0 26 chain 2010 chr6 171115067 + 82059758 82059779 HERVH-int 3825 - 3127 3148 238549 21 chain 29568 chr6 171115067 + 82060443 82060877 LTR7Y 441 - 0 441 86338 197 68 84 57 9 0 103 chain 54182 chr6 171115067 + 82060883 82061591 LTR17 781 + 71 771 56240 121 0 1 106 10 0 27 1 2 24 22 23 17 8 7 372 chain 83754 chr6 171115067 + 82074749 82075673 L1PA3long 6157 - 1 924 42010 9 1 0 914 chain 19752 chr6 171115067 + 82075677 82075891 L1PA3long 6157 + 5026 5240 127954 214 chain 175856 chr6 171115067 + 82083864 82086325 L1PA8A 6298 + 4137 6291 21365 49 0 3 55 1 3 945 0 1 7 8 0 289 2 1 57 307 0 599 1 3 49 0 1 92 chain 136045 chr6 171115067 + 82109372 82110988 L1PA2 6032 + 4390 6032 26823 152 0 1 205 25 26 405 1 0 83 0 1 149 0 24 24 0 1 315 1 0 256 chain 30434 chr6 171115067 + 82111013 82111368 L1PA5 6144 + 5761 6141 83572 301 0 25 54 chain 31597 chr6 171115067 + 82116830 82117179 L1PA4 6152 + 5803 6152 81493 349 chain 132314 chr6 171115067 + 82118570 82120036 L1PA4 6152 + 4685 6152 27560 1154 0 1 312 chain 22697 chr6 171115067 + 82136885 82137137 AluYf5 307 - 25 277 117092 252 chain 220978 chr6 171115067 + 82140562 82143071 L1PA3long 6157 - 0 2505 17821 363 2 0 149 3 1 254 0 1 495 1 0 1242 chain 487302 chr6 171115067 + 82143075 82183879 L1PA3long 6157 + 8 6151 7469 1038 34662 0 192 0 2 1270 0 1 1734 8 0 399 0 3 99 1 0 636 1 3 312 0 2 452 chain 232785 chr6 171115067 + 82144116 82146715 L1PA3long 6157 + 1051 3647 17152 24 1 0 142 0 1 31 1 0 535 7 6 907 1 0 950 chain 74892 chr6 171115067 + 82150458 82151332 MER11D 897 + 0 897 46067 593 1 24 280 chain 54258 chr6 171115067 + 82151496 82152156 PABL_A 660 + 0 660 56196 660 chain 3322 chr6 171115067 + 82169958 82170004 MER5B 177 + 8 52 218531 39 2 0 5 chain 3280 chr6 171115067 + 82171980 82172016 L1PB1 5432 - 1559 1595 219346 36 chain 3502 chr6 171115067 + 82194017 82194069 MADE1 96 + 45 96 215328 25 3 2 24 chain 284637 chr6 171115067 + 82215607 82218801 L1PA4 6152 - 1 3207 14378 773 1 0 77 1 0 986 0 14 1356 chain 12895 chr6 171115067 + 82224127 82224271 L1PA3long 6157 - 0 145 148650 30 0 1 114 chain 63926 chr6 171115067 + 82230449 82231173 L1PA4 6152 - 1 724 51040 266 3 2 455 chain 24444 chr6 171115067 + 82231179 82231453 L1PA4 6152 + 5150 5425 107834 67 0 1 207 chain 15472 chr6 171115067 + 82247189 82247549 THE1B 368 - 3 368 139987 43 17 16 24 102 107 52 18 19 104 chain 39729 chr6 171115067 + 82258498 82259056 L1PA13 3608 - 2484 3044 69715 11 1 0 66 1 0 184 1 3 24 1 4 154 0 1 26 32 30 57 chain 78511 chr6 171115067 + 82269529 82270418 L1PA4 6152 + 5253 6143 44264 131 0 1 758 chain 528662 chr6 171115067 + 82288280 82294399 L1PA5 6144 + 3 6132 4340 613 11 12 398 2 1 410 0 1 114 0 2 327 0 1 1294 1 0 1103 0 1 92 0 2 922 1 5 691 7 0 7 0 7 126 chain 45009 chr6 171115067 + 82295754 82296335 THE1B-int 1605 - 0 1605 63048 187 10 1032 56 1 0 220 0 3 107 chain 52519 chr6 171115067 + 82296973 82297604 L1PA7 6471 - 4 646 57288 151 11 12 75 0 5 212 0 2 151 0 3 31 chain 7510 chr6 171115067 + 82298885 82299100 L1MC2 1988 + 1785 1988 174095 8 1 0 34 6 9 11 4 0 34 66 58 11 1 0 33 1 0 5 chain 39729 chr6 171115067 + 82312107 82312619 L1PA8A 6298 - 8 526 69716 380 14 19 91 0 1 27 chain 177675 chr6 171115067 + 82312634 82315192 L1PA8A 6298 + 3502 5742 21194 376 0 1 182 0 5 81 0 2 15 390 53 231 0 4 452 1 0 268 0 1 41 0 1 277 0 6 244 chain 3665 chr6 171115067 + 82338471 82338523 L1PB1 5432 - 12 62 212472 16 1 0 13 1 0 21 chain 23573 chr6 171115067 + 82342691 82343048 THE1B 368 - 0 368 112725 65 1 0 17 0 1 43 1 0 9 2 1 18 2 6 8 1 0 6 0 4 21 1 0 77 7 14 78 chain 30222 chr6 171115067 + 82351373 82351691 AluYb8 318 + 0 318 84124 318 chain 8163 chr6 171115067 + 82372496 82372606 MSTA 426 - 48 162 170156 61 6 10 43 chain 127410 chr6 171115067 + 82372688 82374074 L1PA2 6032 - 2 1389 28711 339 0 1 1047 chain 120529 chr6 171115067 + 82374074 82375390 L1PA2 6032 + 3308 4618 30790 127 10 4 1179 chain 118722 chr6 171115067 + 82382214 82383748 THE1B-int 1605 - 0 1605 31522 622 3 27 274 1 0 7 0 1 5 0 8 117 4 0 23 1 0 8 0 1 32 0 2 5 3 41 143 0 1 246 0 2 40 chain 23619 chr6 171115067 + 82412833 82413190 THE1A 353 + 0 353 112477 13 2 0 34 0 1 35 12 11 14 27 26 145 1 0 74 chain 23877 chr6 171115067 + 82421206 82421495 L1PA7 6471 + 6179 6468 111039 289 chain 20116 chr6 171115067 + 82475221 82475471 MER11B 1079 - 100 343 126777 21 1 0 187 8 2 33 chain 21823 chr6 171115067 + 82492083 82492462 THE1C 375 - 0 375 120932 26 3 1 62 11 10 78 22 19 54 15 16 21 4 5 28 0 1 4 1 0 50 chain 33638 chr6 171115067 + 82544744 82545136 L1PA7 6471 - 4 396 78190 392 chain 21113 chr6 171115067 + 82556627 82556893 L1P3 4156 - 17 286 123518 24 2 1 7 2 0 100 0 6 131 chain 2335 chr6 171115067 + 82570936 82571091 MER5A 189 - 24 181 234929 14 44 45 19 1 0 4 42 43 16 4 5 11 chain 530382 chr6 171115067 + 82579051 82585435 L1PA7 6471 + 36 6445 4144 135 0 1 110 0 1 120 1 2 1080 0 1 65 0 1 201 1 0 154 0 1 725 21 0 463 0 4 320 0 5 59 1 2 287 5 18 732 0 2 130 1 3 9 6 14 270 1 0 26 16 16 632 3 8 39 0 1 208 0 1 563 chain 39792 chr6 171115067 + 82594086 82594532 L1PA4 6152 - 6 452 69638 446 chain 221676 chr6 171115067 + 82594532 82597427 HERVL-int 5654 - 717 3649 17773 97 3 10 4 1 0 156 18 29 675 0 2 172 0 13 38 11 10 295 5 0 203 8 12 342 6 5 46 0 5 296 7 0 362 13 23 137 chain 99067 chr6 171115067 + 82625767 82626916 L1PA5 6144 - 3 1131 37007 150 26 1 695 0 4 278 chain 31675 chr6 171115067 + 82641482 82641845 L1PA7 6471 + 5260 5623 81365 363 chain 65851 chr6 171115067 + 82641845 82642640 L1PA7 6471 + 5627 6423 50166 97 0 1 634 3 0 5 0 3 56 chain 2215 chr6 171115067 + 82642650 82642683 L1PA7 6471 + 6433 6464 236369 26 2 0 5 chain 34785 chr6 171115067 + 82652393 82652780 L1PA4 6152 - 1 389 76497 147 0 1 240 chain 536327 chr6 171115067 + 82662759 82668884 L1PA5 6144 - 3 6144 3406 335 0 1 504 0 4 943 5 1 719 0 2 658 0 4 976 0 1 38 1 2 401 0 2 681 1 2 724 0 4 139 chain 463666 chr6 171115067 + 82679421 82685892 L1PA8A 6298 + 28 6291 8267 6 6 0 6 1 0 18 2 1 5 3 0 6 2 0 8 9 4 17 3 0 20 19 10 19 13 11 10 2 1 7 0 1 9 2 0 15 2 0 6 1 0 13 1 0 8 1 0 14 20 15 7 1 0 43 1 0 20 39 33 46 2 0 13 30 27 60 5 1 16 6 0 275 0 1 31 5 6 290 6 0 14 1 0 440 0 24 170 11 164 183 335 0 63 0 1 5 1 0 87 1 0 13 16 5 210 1 25 42 0 4 129 7 8 137 1 0 521 1 0 71 0 6 22 1 3 223 0 1 130 0 2 139 8 7 79 1 5 84 0 2 243 0 2 58 12 10 508 6 0 318 5 6 198 4 0 174 3 2 12 0 1 613 chain 23633 chr6 171115067 + 82681450 82681745 L1PA5 6144 - 27 324 112401 145 2 0 5 4 6 84 1 3 54 chain 7449 chr6 171115067 + 82686617 82686723 MSTB 430 + 322 430 174446 39 4 5 5 0 1 58 chain 3925 chr6 171115067 + 82693222 82693266 MADE1 96 + 52 96 208483 44 chain 79674 chr6 171115067 + 82719576 82720637 L1PA8 5853 - 0 1073 43746 93 1 0 19 2 1 39 40 38 55 2 0 44 1 0 202 10 11 146 1 5 114 0 2 71 1 2 102 0 11 118 chain 14995 chr6 171115067 + 82783747 82783940 L1PA6 6164 + 5969 6162 141335 21 0 2 162 2 0 8 chain 44833 chr6 171115067 + 82789377 82789957 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1 20 0 4 322 23 22 985 0 2 1121 0 1 128 0 5 99 0 2 41 0 2 846 chain 28683 chr6 171115067 + 82861826 82862132 AluYg6 310 + 0 306 90396 306 chain 39150 chr6 171115067 + 82867325 82867955 L1PB1 5432 + 4436 5082 70539 72 8 13 28 22 23 57 2 1 62 7 13 86 42 45 178 4 6 62 chain 26685 chr6 171115067 + 82936311 82936622 AluSp 311 - 0 311 97362 311 chain 22099 chr6 171115067 + 82942607 82942894 AluSp 311 + 20 304 119788 165 16 11 79 0 2 27 chain 6211 chr6 171115067 + 82950703 82950789 MER85 139 + 42 139 183487 54 0 14 6 3 0 23 chain 25659 chr6 171115067 + 82952679 82952972 AluY 311 + 3 299 101452 129 0 1 135 0 2 29 chain 21946 chr6 171115067 + 82960341 82960608 AluYk4 311 + 11 283 120439 23 0 8 79 1 0 5 2 0 157 chain 14103 chr6 171115067 + 82971278 82971535 MER4A1 472 + 109 400 144208 138 73 107 46 chain 22095 chr6 171115067 + 82986861 82987231 THE1D 372 - 0 370 119815 32 1 0 115 1 2 29 62 61 17 4 5 109 chain 494084 chr6 171115067 + 82987829 82994361 L1PA7 6471 - 2 6462 7168 8 3 0 94 22 43 10 0 1 5 2 1 498 310 0 188 1 0 672 9 7 265 0 8 300 0 1 4 1 0 539 0 1 16 0 3 267 4 5 38 0 1 394 0 4 366 0 1 91 1 2 14 0 1 344 0 2 73 0 18 46 0 1 369 1 0 31 10 4 282 0 1 166 13 32 505 0 5 165 3 0 67 42 212 161 4 0 128 chain 61420 chr6 171115067 + 82998024 82998826 L1PA8 5853 + 5061 5853 52142 380 0 1 62 5 0 105 2 0 70 11 9 52 2 1 19 1 0 93 chain 26876 chr6 171115067 + 83000372 83000722 THE1A 353 - 0 353 96717 57 0 3 70 5 6 109 1 0 108 chain 49845 chr6 171115067 + 83007628 83008215 LTR14C 587 - 0 587 59124 199 2 1 315 0 1 71 chain 190170 chr6 171115067 + 83010829 83012998 L1PA3long 6157 + 3980 6156 20030 116 1 2 262 0 2 938 0 1 245 0 3 607 chain 32630 chr6 171115067 + 83013013 83013394 L1PA5 6144 + 5761 6143 79795 284 2 3 95 chain 7772 chr6 171115067 + 83085527 83085646 THE1C 375 - 214 375 172470 38 17 59 64 chain 115000 chr6 171115067 + 83085660 83087191 THE1C-int 1605 - 15 1581 32796 58 0 1 105 0 11 31 0 9 197 5 6 4 1 0 12 3 4 118 0 1 165 1 9 132 1 2 273 0 7 90 1 0 20 0 6 2 19 0 180 0 1 4 5 14 104 chain 25585 chr6 171115067 + 83087214 83087592 THE1C 375 - 0 375 101802 25 1 0 117 50 51 59 3 0 123 chain 21266 chr6 171115067 + 83088516 83088772 AluY 311 + 37 294 122969 95 0 1 161 chain 553138 chr6 171115067 + 83099136 83105142 L1PA2 6032 - 3 6032 1052 1803 0 4 3651 0 1 201 0 18 351 chain 5472 chr6 171115067 + 83150385 83150451 MER41B 635 + 481 547 190289 66 chain 39731 chr6 171115067 + 83156485 83156949 LTR2 463 - 0 463 69709 301 1 0 162 chain 538847 chr6 171115067 + 83179223 83185366 L1PA4 6152 + 1 6151 3016 149 14 0 1082 4 5 36 1 2 652 0 1 111 1 3 344 0 4 116 0 2 385 0 2 91 0 2 520 0 1 847 0 4 1648 0 1 142 chain 530570 chr6 171115067 + 83206187 83212299 L1PA4 6152 - 0 6150 4127 6 0 5 102 0 1 226 1 0 350 0 22 132 0 4 1784 5 6 672 1 0 529 1 0 111 0 2 158 1 3 177 0 1 441 5 15 9 9 0 159 0 1 926 4 5 303 chain 16514 chr6 171115067 + 83216810 83217055 HSMAR2 1300 + 98 340 136879 111 5 1 44 16 17 69 chain 496116 chr6 171115067 + 83222038 83228140 L1PA7 6471 + 341 6465 7061 526 0 1 151 0 10 116 9 3 120 5 4 163 6 7 55 13 25 40 6 7 200 14 14 299 0 1 210 0 5 275 0 2 240 2 0 25 2 0 6 0 2 391 0 4 451 9 0 8 4 13 222 6 0 87 0 3 304 1 0 442 0 1 140 2 1 40 1 0 236 2 0 423 0 3 21 0 1 321 2 0 353 5 6 140 2 0 6 chain 504225 chr6 171115067 + 83252735 83261853 L1PA6 6164 - 2 6163 6584 143 11 12 683 5 9 323 0 1 617 0 12 76 5 3 266 0 3 9 3 0 105 3 0 594 0 1 365 0 1 604 2 1 41 1 2 21 0 2 310 0 1 112 2672 0 69 1 2 310 311 5 964 0 3 5 9 6 65 1 0 5 0 1 171 0 2 236 chain 28286 chr6 171115067 + 83257037 83257362 L1PA4 6152 - 2342 2667 91989 325 chain 14640 chr6 171115067 + 83257362 83257538 L1PA4 6152 + 3819 3996 141662 119 0 1 57 chain 90838 chr6 171115067 + 83257538 83258548 L1PA4 6152 + 3999 5009 39344 1010 chain 100352 chr6 171115067 + 83258555 83259686 L1PA4 6152 + 5013 6144 36672 1131 chain 551402 chr6 171115067 + 83268120 83274140 L1PA2 6032 + 4 6032 1265 251 2 1 577 0 4 4094 0 5 1096 chain 21296 chr6 171115067 + 83314073 83314331 AluSx 319 + 19 276 122873 156 1 0 101 chain 20698 chr6 171115067 + 83316651 83316881 L1PA5 6144 - 9 239 124972 230 chain 482480 chr6 171115067 + 83342502 83347922 L1PA3long 6157 + 20 6157 7642 74 0 526 152 4 132 141 0 1 505 0 58 972 0 3 2855 0 1 717 chain 10591 chr6 171115067 + 83352711 83353246 L1PB1 5432 + 5113 5390 157864 25 1 0 4 3 2 14 4 1 9 12 10 6 3 0 36 253 20 18 6 8 13 2 1 16 1 0 7 14 5 18 3 1 5 1 0 14 2 0 24 1 0 20 chain 6832 chr6 171115067 + 83357876 83357952 L1PA7 6471 + 3125 3201 178711 76 chain 270253 chr6 171115067 + 83357952 83361211 L1PA7 6471 + 3202 6470 15174 276 1 0 115 0 1 88 0 1 242 0 1 188 0 6 7 5 6 1065 0 3 4 1 0 6 0 1 409 0 3 78 1 0 428 4 1 43 5 4 142 0 1 95 20 20 29 2 0 5 chain 65648 chr6 171115067 + 83382916 83383924 L1PB1 5432 + 4446 5423 50273 29 3 9 137 0 1 85 0 1 90 1 0 207 6 0 98 1 0 10 2 1 24 1 0 6 1 0 10 12 8 6 2 0 48 8 7 13 1 0 22 3 4 19 6 5 10 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 22 3 2 10 1 0 8 1 0 11 chain 25090 chr6 171115067 + 83414156 83414522 THE1B 368 - 0 368 104348 75 1 0 41 0 3 55 2 0 22 12 11 119 7 12 15 2 0 15 chain 116499 chr6 171115067 + 83414527 83416144 THE1B-int 1605 - 12 1605 32280 90 0 2 65 1 0 118 83 0 256 0 1 36 2 0 8 1 3 51 6 7 244 6 7 239 9 34 314 5 35 83 chain 490577 chr6 171115067 + 83424932 83430587 L1PA4 6152 + 1 6143 7337 574 1 0 661 0 1 691 0 1 172 0 1 8 0 2 82 1 0 235 0 3 520 0 1 317 0 10 185 0 483 738 1 0 143 0 10 338 32 6 200 0 1 156 0 3 600 chain 24102 chr6 171115067 + 83444063 83444390 L1MA2 4263 - 215 537 109737 82 1 0 8 1 0 152 12 9 71 chain 4190 chr6 171115067 + 83450201 83450247 MADE1 96 - 50 96 204686 46 chain 264019 chr6 171115067 + 83464448 83467546 L1PA5 6144 - 2137 5225 15484 50 0 3 451 0 1 205 0 1 4 1 0 128 1 0 856 8 0 213 0 1 481 0 1 442 15 5 86 1 4 156 chain 182795 chr6 171115067 + 83467624 83469708 L1PA5 6144 + 4045 6132 20702 855 0 4 390 1 0 838 chain 7914 chr6 171115067 + 83489970 83490067 MSTD-int 1705 + 12 109 171560 97 chain 18346 chr6 171115067 + 83500548 83500779 MER75B 242 + 0 231 131943 18 3 4 179 1 0 30 chain 527156 chr6 171115067 + 83512972 83519669 L1PA7 6471 - 6 6470 4483 83 11 12 42 8 0 6 0 3 6 1 6 683 2 6 63 0 4 54 1 0 43 1 11 519 0 14 238 0 4 36 0 1 110 0 2 633 1 3 328 4 8 35 280 0 596 0 1 883 4 0 125 6 5 688 0 4 805 0 2 402 chain 54691 chr6 171115067 + 83525001 83525640 L1PA7 6471 + 4982 5621 55911 639 chain 6951 chr6 171115067 + 83525640 83525723 L1PA7 6471 + 5624 5707 177803 83 chain 50222 chr6 171115067 + 83525725 83526326 L1PA7 6471 + 5707 6308 58850 566 9 7 5 0 2 21 chain 12748 chr6 171115067 + 83526327 83526477 L1PA7 6471 + 6310 6460 149261 150 chain 25189 chr6 171115067 + 83537223 83537502 L1PA4 6152 + 5872 6151 103802 279 chain 51155 chr6 171115067 + 83537556 83538195 L1PA8 5853 + 5215 5853 58216 6 0 6 337 1 0 45 2 0 69 12 10 52 2 1 19 2 1 92 chain 18433 chr6 171115067 + 83544136 83544516 MSTB 430 - 15 430 131684 43 0 1 49 13 18 56 1 0 10 35 46 25 60 78 62 0 1 26 chain 452445 chr6 171115067 + 83561660 83566805 L1PA4 6152 + 1 6152 8673 95 0 996 1361 0 15 76 0 2 62 22 13 1128 1 0 537 0 2 674 0 1 1189 chain 41309 chr6 171115067 + 83582856 83583394 MLT2A2 560 + 0 560 67522 179 2 1 219 0 21 11 2 4 125 chain 4493 chr6 171115067 + 83583394 83583449 MER31B 477 + 328 383 200872 55 chain 29816 chr6 171115067 + 83585015 83585442 MLT2A1 477 - 0 464 85391 33 1 0 6 23 56 58 1 0 118 10 11 22 0 4 26 0 1 129 chain 83486 chr6 171115067 + 83607582 83608553 L1PA7 6471 + 5492 6467 42122 126 1 3 260 0 1 257 0 1 327 chain 103711 chr6 171115067 + 83632173 83633441 L1PA7 6471 + 5182 6468 35797 181 0 1 34 1 16 203 0 7 674 7 0 6 4 5 108 1 2 49 chain 42308 chr6 171115067 + 83660299 83660928 L1MA3 4352 + 3706 4311 66258 387 38 11 7 0 8 60 1 0 81 2 0 15 9 8 5 1 0 23 chain 6670 chr6 171115067 + 83669819 83669904 MER34D 576 - 491 576 179906 85 chain 24550 chr6 171115067 + 83675029 83675322 AluSp 311 + 9 302 107250 293 chain 3820 chr6 171115067 + 83680711 83680781 L1MB5 1630 - 221 290 210083 17 13 11 5 0 1 35 chain 447935 chr6 171115067 + 83720693 83726275 HERVL-int 5654 - 0 5654 8815 120 1 2 22 1 5 704 4 0 207 7 17 165 0 1 38 1 5 300 9 21 106 0 1 72 0 3 69 0 12 357 0 1 185 0 1 9 25 18 20 0 1 490 12 14 500 0 1 489 1 17 51 0 6 12 3 7 77 0 1 356 0 1 396 8 0 210 0 1 6 12 11 268 8 17 261 chain 12797 chr6 171115067 + 83733244 83733583 L1PB1 5432 + 5108 5423 149063 6 3 0 24 1 0 6 1 0 16 4 0 8 2 0 52 2 1 9 7 6 44 1 0 16 13 8 9 7 0 13 25 21 23 1 0 4 9 17 13 6 5 14 chain 32804 chr6 171115067 + 83740313 83741317 THE1B-int 1605 + 0 1334 79522 68 2 1 27 47 0 17 10 14 243 432 862 33 57 1 68 chain 24205 chr6 171115067 + 83764374 83764667 AluSg7 307 - 13 307 109183 162 0 1 131 chain 2338 chr6 171115067 + 83768712 83768737 MER58C 217 - 30 55 234907 25 chain 12183 chr6 171115067 + 83787486 83787685 MER30 238 - 0 237 151481 82 1 0 23 11 30 35 1 3 16 7 25 23 chain 20000 chr6 171115067 + 83800652 83801011 THE1B 368 - 0 368 127146 7 0 4 64 1 0 43 0 1 30 0 1 20 53 33 14 19 28 55 9 24 44 chain 14284 chr6 171115067 + 83812877 83813193 L1PB1 5432 + 5134 5422 143611 10 1 0 14 16 10 52 2 1 12 9 8 28 0 1 11 1 0 14 45 32 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 21293 chr6 171115067 + 83835873 83836166 LTR28 1034 - 737 1034 122886 60 7 6 120 5 1 11 0 8 62 0 1 28 chain 92175 chr6 171115067 + 83875141 83876404 HSMAR1 1287 - 0 1287 38911 329 0 1 4 1 0 42 0 1 212 0 1 49 1 0 4 8 9 44 0 1 20 6 5 115 9 10 28 0 1 185 0 5 11 1 2 49 4 13 21 0 4 11 4 5 105 chain 25819 chr6 171115067 + 83912812 83913180 THE1C 375 - 1 368 100794 17 8 7 39 1 0 31 0 1 93 1 0 106 15 16 57 chain 91425 chr6 171115067 + 83916278 83917660 L1PA14 3548 + 2164 3484 39156 372 1 0 84 5 2 8 0 3 56 1 0 249 3 1 14 2 0 27 18 18 7 2 0 107 10 6 13 2 0 6 1 0 84 1 0 110 1 0 11 31 1 33 5 3 14 1 0 5 4 3 12 3 5 39 13 1 7 1 0 19 chain 23972 chr6 171115067 + 83922872 83923148 AluSp 311 + 11 287 110490 276 chain 6640 chr6 171115067 + 83932456 83932566 LTR40a 516 + 395 509 180165 40 19 23 51 chain 27581 chr6 171115067 + 83958212 83958596 THE1D 372 + 7 372 94404 68 19 0 116 0 3 123 2 0 19 2 1 35 chain 66383 chr6 171115067 + 83966129 83966920 L1PA7 6471 + 5680 6469 49917 23 1 0 589 1 0 177 chain 87710 chr6 171115067 + 83991845 83993306 L1PA8 5853 + 4705 5853 40483 5 0 2 7 0 1 5 1 0 104 0 1 175 0 1 4 6 4 70 1 4 144 0 1 290 312 0 41 1 0 44 2 0 71 12 10 50 5 4 13 6 5 92 chain 19514 chr6 171115067 + 83993395 83993906 L1PA15-16 3068 + 691 2574 128616 95 0 1419 9 4 5 30 9 7 22 3 0 23 1 0 7 2 0 38 5 0 12 130 102 17 1 0 13 1 0 8 1 0 8 4 3 41 1 0 5 1 0 13 1 0 6 chain 257021 chr6 171115067 + 83996874 84000000 L1PA7 6471 - 3 3155 15880 9 3 0 139 4 0 8 0 5 686 2 1 894 0 1 39 0 5 591 0 17 117 0 1 348 0 1 50 4 8 50 0 1 11 3 2 168 chain 236473 chr6 171115067 + 84000005 84002994 L1P2 5180 - 2183 5178 16954 244 0 3 171 0 4 181 0 4 71 1 0 49 1 0 42 3 0 6 0 3 543 1 2 587 0 3 96 0 1 189 0 15 218 1 0 50 1 0 68 19 0 193 11 10 50 1 0 44 6 5 121 0 1 21 chain 81880 chr6 171115067 + 84008750 84009818 L1PA10 4194 - 33 1095 42813 11 1 0 33 4 1 98 8 0 61 0 1 150 4 9 698 chain 47597 chr6 171115067 + 84010368 84010925 L1PA5 6144 + 5586 6144 60766 215 4 5 338 chain 34004 chr6 171115067 + 84027022 84027395 L1PA3long 6157 - 1639 2012 76833 373 chain 149602 chr6 171115067 + 84027395 84029032 L1PA3long 6157 + 4520 6157 24673 1637 chain 514323 chr6 171115067 + 84030591 84038188 L1PA7 6471 + 16 6466 5741 266 1 0 297 1 7 84 47 0 10 0 47 1309 0 1 294 6 7 110 0 2 40 7 6 143 40 7 130 0 1 772 0 4 53 1 0 78 0 2 15 12 0 128 17 0 51 4 0 161 6 7 4 1 0 45 0 2 915 35 0 235 0 11 23 1 0 162 0 1 96 0 1 59 0 4 14 2 0 6 0 1 36 0 1 37 0 2 150 2 0 120 1081 0 371 0 2 111 0 1 8 chain 76484 chr6 171115067 + 84036623 84037675 MER11C 1089 + 0 1063 45221 247 7 16 54 7 6 63 1 0 177 40 39 88 1 5 4 1 0 38 0 1 127 0 1 54 10 9 108 0 1 25 chain 22666 chr6 171115067 + 84041943 84042260 L1PB3 3668 + 3162 3475 117242 21 2 0 21 2 3 84 1 0 100 1 0 49 1 0 35 chain 567048 chr6 171115067 + 84043671 84049702 L1HS 6032 + 0 6032 84 736 0 1 5295 chain 50869 chr6 171115067 + 84051399 84052062 MER51A 677 + 0 641 58390 152 0 1 23 17 0 23 10 0 152 0 1 262 0 3 24 chain 32641 chr6 171115067 + 84067235 84067733 MLT2A1 477 + 0 477 79782 168 9 6 5 0 1 24 0 1 180 75 55 37 chain 461881 chr6 171115067 + 84067772 84073723 HERVL-int 5654 + 0 5654 8336 648 1 0 7 0 1 148 364 0 611 0 1 170 0 31 446 7 16 45 1 0 126 0 4 206 6 0 177 0 1 344 0 1 647 0 5 216 0 6 92 1 5 86 7 6 711 0 6 520 0 3 172 8 12 184 chain 32926 chr6 171115067 + 84073723 84074165 MLT2A1 477 + 0 477 79329 169 4 1 9 0 1 23 0 1 21 2 0 39 1 2 133 3 41 33 1 0 4 chain 3271 chr6 171115067 + 84078746 84078782 L1PA7 6471 - 14 50 219559 36 chain 67782 chr6 171115067 + 84084809 84085621 L1PA10 4194 - 90 905 49330 22 0 1 231 0 2 559 chain 210485 chr6 171115067 + 84113219 84116188 L1PA8 5853 - 0 2638 18470 37 0 1 74 2 1 39 4 5 7 1 0 10 1 0 71 2 0 44 1 0 9 0 1 79 12 8 284 2 1 98 5 7 66 0 2 52 0 1 5 1 0 89 14 7 91 0 1 479 0 1 377 0 2 241 324 0 448 chain 28095 chr6 171115067 + 84115441 84115739 AluYa5 310 - 12 310 92666 298 chain 27744 chr6 171115067 + 84135054 84135428 THE1C 375 - 0 375 93886 25 1 0 35 0 1 109 7 11 4 1 0 12 0 1 52 3 0 125 chain 175129 chr6 171115067 + 84149412 84151374 L1P1 4361 - 136 2097 21444 75 1 0 1886 chain 83696 chr6 171115067 + 84151374 84152297 L1PA3long 6157 + 5229 6156 42038 81 0 4 842 chain 323706 chr6 171115067 + 84155599 84159482 HERV17-int 4347 + 13 4347 12456 13 2 1 52 1 0 33 2 0 20 8 7 188 1 431 153 6 9 118 0 1 121 0 1 97 0 19 74 1 2 65 0 1 45 8 6 356 0 2 801 0 1 14 2 0 13 0 1 247 1 0 930 1 0 128 18 19 130 0 1 234 chain 25990 chr6 171115067 + 84159795 84160109 LTR17 781 + 0 326 100052 163 0 12 11 2 0 108 0 2 30 chain 6158 chr6 171115067 + 84167306 84167402 MER3 215 - 34 146 183912 16 9 25 71 chain 8380 chr6 171115067 + 84193687 84193906 MER30 238 - 3 238 168962 28 11 8 67 9 0 7 67 95 30 chain 4658 chr6 171115067 + 84198175 84198243 L1MC2 1988 - 324 391 198973 15 4 3 49 chain 7850 chr6 171115067 + 84199496 84199597 MLT1B-int 1170 - 204 304 172002 8 1 0 92 chain 530993 chr6 171115067 + 84205389 84211510 L1PA5 6144 + 3 6138 4081 561 3 2 1242 0 2 128 0 1 37 6 8 321 1 2 1387 13 21 439 1 2 156 2 0 346 1 0 617 0 4 12 0 4 106 0 1 218 6 0 518 chain 56766 chr6 171115067 + 84242193 84242844 L1PA5 6144 - 2586 3238 54675 55 1 2 595 chain 8651 chr6 171115067 + 84242845 84242940 L1PA5 6144 + 3550 3645 167467 95 chain 217901 chr6 171115067 + 84242940 84245432 L1PA5 6144 + 3654 6144 18009 506 0 1 1318 1 0 161 2 0 170 0 1 191 1 0 142 chain 7744 chr6 171115067 + 84249688 84249779 L1PA4 6152 + 6056 6152 172629 85 0 5 6 chain 272091 chr6 171115067 + 84251147 84254310 L1PA5 6144 - 7 3193 15071 170 0 1 455 3 0 134 1 2 74 0 4 500 13 14 149 0 5 146 0 2 322 0 1 87 0 1 136 1 2 121 0 1 646 0 1 43 0 7 162 chain 140666 chr6 171115067 + 84254310 84255928 L1PA5 6144 + 1327 2931 26043 676 17 1 239 0 2 686 chain 455013 chr6 171115067 + 84256071 84262334 L1PA5 6144 + 4 6132 8583 116 0 14 77 1 0 118 77 50 84 19 0 51 35 36 18 2 1 12 84 8 149 42 21 33 19 36 81 9 13 30 25 0 213 13 4 854 5 4 48 7 19 81 6 5 14 0 2 108 6 0 34 23 4 235 1 0 4 0 1 247 0 1 340 0 1 78 2 1 250 1 0 35 8 9 323 8 7 373 0 1 94 0 8 270 2 1 525 0 5 72 1 9 39 1 5 713 1 0 101 3 0 42 chain 13808 chr6 171115067 + 84277066 84277225 L1PA5 6144 + 4976 5138 145230 59 1 4 99 chain 85003 chr6 171115067 + 84277225 84278189 L1PA5 6144 + 5139 6109 41510 216 0 4 133 0 2 615 chain 25616 chr6 171115067 + 84279345 84279695 THE1B 368 + 0 366 101641 44 0 15 19 0 1 93 1 0 115 19 20 59 chain 31042 chr6 171115067 + 84281122 84281497 THE1B-int 1605 + 1221 1595 82451 21 1 0 353 chain 26262 chr6 171115067 + 84281507 84281851 THE1B 368 + 0 368 98969 40 0 15 112 6 5 106 0 10 80 chain 9854 chr6 171115067 + 84312563 84312716 L1PA8 5853 + 5696 5853 161323 44 2 1 17 4 3 52 1 7 33 chain 394821 chr6 171115067 + 84337592 84343028 L1PB1 5432 - 12 5402 10285 14 8 2 13 1 0 19 1 0 27 2 0 13 73 55 41 1 0 15 2 1 53 2 0 9 18 13 11 50 31 20 0 4 6 5 1 67 0 14 176 12 0 185 0 2 15 0 4 100 25 24 279 0 2 245 1 0 20 5 9 106 4 8 92 0 3 230 8 12 355 0 2 40 0 1 238 3 2 46 0 7 243 15 17 30 1 0 32 1 0 26 6 0 9 4 10 573 0 4 33 7 6 59 4 5 22 4 3 22 0 5 292 19 13 294 47 7 332 3 9 139 0 1 152 1 4 40 8 7 259 1 0 6 0 1 77 6 13 13 chain 17703 chr6 171115067 + 84343628 84343830 L1PA4 6152 + 5948 6151 133695 46 0 1 156 chain 27079 chr6 171115067 + 84344352 84344711 L1PA17 2846 - 2466 2824 96007 210 1 3 17 1 0 119 1 0 4 1 0 5 chain 123354 chr6 171115067 + 84351919 84353306 L1PA5 6144 - 9 1397 29929 836 0 1 551 chain 10718 chr6 171115067 + 84377361 84377482 L1PA5 6144 - 4 125 157333 121 chain 86418 chr6 171115067 + 84377482 84378456 L1PA5 6144 + 5066 6042 40999 360 0 1 559 4 5 51 chain 12712 chr6 171115067 + 84378575 84378826 MER47A 366 - 6 258 149412 13 29 31 14 1 0 52 0 34 9 34 0 99 chain 20469 chr6 171115067 + 84392304 84392528 L1PA3long 6157 - 0 224 125707 224 chain 26287 chr6 171115067 + 84424664 84425040 THE1C 375 - 2 375 98875 23 1 0 74 10 11 6 1 0 54 23 19 5 0 2 179 chain 16698 chr6 171115067 + 84438559 84438752 L1PA7 6471 + 6115 6307 136410 141 1 0 51 chain 13023 chr6 171115067 + 84438755 84438916 L1PA7 6471 + 6308 6466 148167 153 3 0 5 chain 11468 chr6 171115067 + 84443370 84443573 L1MB5 1630 + 1252 1460 154435 108 42 47 53 chain 165429 chr6 171115067 + 84455288 84458236 L1PB1 5432 + 2877 5426 22602 225 0 1 444 32 31 151 1 3 210 2 1 17 6 7 17 6 2 78 6 0 273 0 2 47 0 2 75 109 7 74 1 0 85 9 6 50 0 1 108 32 35 208 355 91 6 1 0 10 1 0 11 10 6 8 2 0 51 18 16 15 67 57 17 2 0 7 2 1 13 2 0 24 1 0 23 1 0 7 9 8 10 1 0 8 chain 4059 chr6 171115067 + 84459539 84459588 MER33 330 - 247 296 206502 49 chain 45900 chr6 171115067 + 84461951 84462474 L1PA4 6152 - 11 536 62130 102 0 1 34 0 1 387 chain 11696 chr6 171115067 + 84465809 84465972 MER30 238 - 2 180 153491 40 3 0 64 8 26 48 chain 12738 chr6 171115067 + 84489146 84489293 L1PA3long 6157 - 1 147 149301 4 1 0 142 chain 554106 chr6 171115067 + 84507461 84513489 L1PA2 6032 - 1 6032 934 4729 0 4 1042 1 0 256 chain 28880 chr6 171115067 + 84521351 84521657 AluYa5 310 - 4 310 89539 306 chain 4802 chr6 171115067 + 84552928 84553180 Charlie1 1172 + 842 1120 197341 21 175 200 18 0 1 38 chain 8298 chr6 171115067 + 84600965 84601070 Tigger1 2417 + 2298 2411 169413 57 0 8 48 chain 22304 chr6 171115067 + 84604311 84604684 Tigger2a 444 - 63 437 118899 93 1 2 99 0 1 47 6 9 26 9 6 18 46 45 28 chain 11068 chr6 171115067 + 84606459 84606630 L1MA4A 3247 - 119 290 155688 20 1 0 43 0 7 15 5 0 72 3 2 12 chain 411240 chr6 171115067 + 84606630 84611379 L1PA5 6144 - 0 4703 9771 113 1 0 287 0 13 195 9 11 224 0 4 284 76 5 1838 1 0 1068 1 5 327 0 4 325 chain 4052 chr6 171115067 + 84632353 84632403 L1PA8 5853 - 6 56 206610 50 chain 21597 chr6 171115067 + 84633555 84633811 AluY 311 + 53 305 121777 72 5 1 179 chain 25854 chr6 171115067 + 84641522 84641811 L1PA5 6144 - 1 290 100633 289 chain 24757 chr6 171115067 + 84648554 84648854 AluSp 311 - 16 311 106126 57 3 0 106 2 0 132 chain 511170 chr6 171115067 + 84651898 84658232 L1PA7 6471 + 3 6461 6052 189 9 20 200 1 2 349 0 2 308 0 1 194 21 19 217 1 8 121 0 2 167 3 26 163 0 2 42 1 0 606 1 0 65 0 4 25 1 6 92 5 9 257 1 5 681 1 0 494 0 3 387 0 8 126 0 5 55 0 3 89 1 0 322 0 1 29 0 5 158 0 6 146 1 6 11 2 0 61 0 20 50 5 6 15 1 0 21 0 2 290 0 1 106 0 2 180 0 1 20 0 4 43 chain 54742 chr6 171115067 + 84661019 84661666 L1PA7 6471 - 14 663 55874 122 0 1 11 0 1 5 1 0 212 0 1 296 chain 63060 chr6 171115067 + 84665865 84666655 MER4E1 777 - 7 777 51425 54 0 1 165 6 0 8 7 6 17 8 0 151 0 1 96 0 1 245 8 0 25 chain 124193 chr6 171115067 + 84673840 84675423 THE1A-int 1579 + 0 1577 29631 20 6 7 99 0 2 318 1 0 5 0 1 181 28 19 511 0 1 301 1 0 112 chain 24056 chr6 171115067 + 84676136 84676421 AluSp 311 + 8 293 110010 285 chain 39869 chr6 171115067 + 84686541 84687056 LTR10F 562 + 0 554 69508 194 7 0 23 1 15 9 0 24 33 7 1 152 0 14 89 chain 165848 chr6 171115067 + 84691604 84694425 MER57-int 2662 + 40 2499 22533 30 45 30 8 1 0 70 380 0 9 0 1 52 0 4 70 2 0 79 0 37 64 0 1 324 2 0 79 25 29 166 4 0 140 29 31 76 1 0 49 0 1 16 1 0 137 74 79 83 3 1 135 17 0 64 8 4 106 1 2 18 23 39 90 0 2 258 18 12 53 2 0 5 0 1 4 chain 88865 chr6 171115067 + 84704900 84705959 MER11B 1079 + 0 1064 40056 225 0 5 34 3 0 94 0 5 406 6 0 214 0 2 10 0 2 67 chain 4380 chr6 171115067 + 84715057 84715109 MLT1A1 405 + 292 344 202198 52 chain 31504 chr6 171115067 + 84741844 84742254 L1PA8 5853 + 5442 5847 81636 122 1 0 41 4 3 71 1 0 61 2 1 19 3 2 85 chain 7063 chr6 171115067 + 84746541 84746724 LTR12C 1709 - 891 1033 177007 23 87 46 73 chain 5189 chr6 171115067 + 84746564 84746627 LTR12C 1709 - 992 1055 184463 63 chain 3657 chr6 171115067 + 84746967 84747009 LTR12C 1709 - 549 591 212636 42 chain 20209 chr6 171115067 + 84753910 84754148 AluSp 311 - 17 254 126505 162 1 0 75 chain 14395 chr6 171115067 + 84754669 84754898 MER2 342 + 93 322 143221 24 1 0 4 16 15 158 5 7 21 chain 390263 chr6 171115067 + 84776628 84782138 L1PB1 5432 - 12 5314 10449 16 1 0 11 4 3 20 8 7 17 2 0 9 59 44 13 1 0 43 1 0 16 2 1 52 2 0 7 19 14 9 1 0 17 6 3 10 0 5 236 2 1 237 9 0 463 0 4 170 0 1 163 4 0 6 1 5 68 0 1 11 3 1 8 21 0 26 1 0 90 194 0 53 7 12 162 0 9 2 8 0 60 0 3 27 0 2 69 0 1 527 0 2 68 6 5 147 3 0 484 0 2 5 7 5 59 0 1 45 0 29 96 0 1 89 0 1 138 2 1 45 5 6 49 6 0 5 2 0 9 1 0 275 1 2 34 1 0 325 5 10 135 13 17 49 12 13 415 chain 14990 chr6 171115067 + 84783503 84783723 MER30 238 + 0 238 141355 15 0 18 68 21 0 15 0 24 52 3 0 46 chain 3868 chr6 171115067 + 84790061 84790105 MER65A 464 - 420 464 209339 44 chain 9854 chr6 171115067 + 84791645 84791766 THE1D 372 + 251 372 161324 121 chain 36222 chr6 171115067 + 84796755 84797202 MER4A1 472 - 0 472 74596 226 0 21 36 0 1 163 2 3 5 0 2 15 chain 26375 chr6 171115067 + 84814610 84814926 THE1B-int 1605 - 1245 1567 98518 90 0 3 31 0 3 195 chain 26434 chr6 171115067 + 84814964 84815320 THE1B 368 - 0 368 98292 5 0 3 67 1 0 93 4 0 17 1 0 4 5 6 5 1 0 113 0 15 40 chain 519858 chr6 171115067 + 84819331 84825752 L1PA7 6471 - 10 6466 5177 524 0 12 300 0 4 18 0 4 35 1 0 27 24 1 58 0 5 479 10 9 38 2 0 91 1 0 219 1 2 60 0 1 538 0 1 544 1 0 99 0 4 198 0 1 41 0 1 46 0 3 10 4 5 213 0 3 11 0 3 165 0 4 46 0 2 467 1 6 62 0 3 69 6 5 181 0 1 238 0 3 205 0 3 187 1 2 12 0 1 212 8 9 558 1 0 8 2 0 399 chain 5113 chr6 171115067 + 84830614 84830678 MER33 330 + 31 95 193939 64 chain 87226 chr6 171115067 + 84838414 84839465 L1PA7 6471 - 2 1076 40678 11 2 0 9 0 2 169 8 9 461 0 3 84 1 4 93 0 2 112 4 13 18 0 5 79 chain 30799 chr6 171115067 + 84839470 84839858 L1PA7 6471 - 1893 2279 82865 144 5 0 120 0 3 119 chain 221138 chr6 171115067 + 84839858 84842593 L1PA7 6471 - 2283 5035 17803 635 0 4 52 15 13 294 0 1 169 0 3 12 0 6 281 3 12 75 6 1 57 5 7 531 1 0 599 chain 7938 chr6 171115067 + 84842613 84842742 L1PA7 6471 - 5047 5176 171396 62 0 1 4 17 16 46 chain 13872 chr6 171115067 + 84842766 84842963 L1PA7 6471 - 5225 5404 144999 58 1 0 73 17 0 48 chain 17270 chr6 171115067 + 84842964 84843299 L1PA7 6471 - 5426 5861 134864 173 3 79 28 2 0 7 6 8 13 15 20 50 0 19 38 chain 12487 chr6 171115067 + 84843485 84843646 L1PA7 6471 - 6244 6405 150310 161 chain 62089 chr6 171115067 + 84843713 84844524 L1P3 4156 - 3331 4156 51857 46 1 5 191 0 1 75 1 0 51 0 12 124 24 23 46 1 0 251 chain 8935 chr6 171115067 + 84856647 84856825 L1MA4A 3247 + 3018 3185 165948 87 3 2 9 39 32 31 3 0 6 chain 7321 chr6 171115067 + 84866528 84866637 L1PB4 2604 + 2427 2544 175293 58 8 14 38 0 2 5 chain 80041 chr6 171115067 + 84873563 84874580 L1PA8 5853 + 4836 5853 43571 37 6 5 133 0 2 100 0 1 45 0 1 293 0 3 106 1 0 46 2 0 69 6 5 11 1 0 17 0 1 29 2 1 19 2 1 92 chain 85315 chr6 171115067 + 84888397 84889388 L1PA5 6144 - 18 1009 41410 137 1 0 670 12 1 28 0 3 8 0 4 128 0 5 7 chain 159585 chr6 171115067 + 84889388 84891217 L1PA5 6144 + 3308 5130 23386 201 1 0 1149 19 11 104 1 2 30 5 6 319 chain 29795 chr6 171115067 + 84898286 84898777 L1PA15 4387 - 61 542 85453 14 2 0 42 6 3 8 2 0 42 1 0 16 4 0 16 2 1 80 1 0 78 16 17 60 1 2 14 1 0 41 5 7 33 0 1 6 chain 139238 chr6 171115067 + 84898904 84900532 LTR12C 1709 + 0 1709 26260 309 0 1 4 1 0 506 0 40 109 0 41 101 1 0 5 3 1 107 0 4 241 1 0 240 chain 301402 chr6 171115067 + 84913954 84917441 L1PA6 6164 + 2658 6161 13351 526 5 6 82 0 5 97 6 5 36 0 1 282 3 0 45 0 8 628 0 1 1194 0 3 254 0 1 329 chain 272008 chr6 171115067 + 84946096 84949354 L1PA7 6471 + 3111 6464 15081 217 0 65 156 0 4 167 1 2 731 1 11 58 0 1 266 0 1 155 5 4 328 1 2 194 0 5 124 0 4 8 0 4 85 0 1 232 0 1 360 10 17 6 6 0 139 3 0 5 chain 152224 chr6 171115067 + 84953492 84955343 SVA_D 2077 - 0 2073 24307 8 8 0 22 0 1 105 0 20 464 0 1 55 9 8 4 0 1 156 48 0 47 48 0 98 0 184 164 0 40 58 0 40 221 0 4 281 0 17 23 0 19 32 chain 3523 chr6 171115067 + 84954323 84954371 SVA_D 2077 - 1021 1072 126141 21 1 0 7 18 22 1 chain 3404 chr6 171115067 + 84954427 84954466 SVA_D 2077 - 726 765 144070 39 chain 3608 chr6 171115067 + 84975554 84975594 L1PA6 6164 - 4 44 213505 40 chain 47829 chr6 171115067 + 85000000 85000966 THE1B-int 1605 - 928 1605 60604 159 323 0 37 27 52 21 0 4 134 0 3 250 0 2 15 chain 6802 chr6 171115067 + 85009428 85009546 MER57B1 401 + 234 343 178942 13 20 0 8 1 0 32 0 12 44 chain 33364 chr6 171115067 + 85009758 85010193 MLT2A1 477 - 0 477 78631 52 5 40 60 0 1 44 0 1 69 7 8 29 0 4 169 chain 22533 chr6 171115067 + 85020255 85020526 AluY 311 + 37 306 117877 19 0 2 65 1 0 9 3 0 174 chain 113549 chr6 171115067 + 85044338 85046155 L1PB1 5432 - 10 1612 33211 18 1 0 11 2 1 22 1 0 24 2 0 14 1 0 5 8 3 16 16 6 6 2 0 15 1 0 44 1 0 16 2 1 52 2 0 5 14 10 7 1 0 8 1 0 22 195 0 11 1 4 286 0 8 93 1 0 6 4 5 220 0 1 128 3 2 77 5 6 276 0 1 29 0 1 142 chain 29532 chr6 171115067 + 85046171 85046481 AluYa5 310 - 0 310 86514 310 chain 459382 chr6 171115067 + 85074293 85079403 L1PA3long 6157 - 10 6157 8428 821 0 2 10 0 4 525 0 22 376 0 2 2070 0 1 325 1 0 796 1 4 88 0 1004 97 chain 46372 chr6 171115067 + 85091989 85092668 L1PB2 3958 - 122 785 61707 17 0 3 40 2 1 23 2 0 72 1 0 63 1 0 165 4 0 9 6 4 52 1 0 9 6 1 15 1 0 55 2 0 47 0 2 5 8 6 41 2 3 30 chain 19023 chr6 171115067 + 85106507 85106738 L1PA7 6471 + 6237 6468 130054 69 1 0 6 1 0 144 0 2 10 chain 3625 chr6 171115067 + 85108461 85108502 MLT1D 503 - 49 90 213240 41 chain 67270 chr6 171115067 + 85145854 85146668 L1PA8 5853 + 5044 5853 49535 36 0 2 482 1 0 46 2 0 70 1 0 8 1 0 52 2 1 19 1 0 93 chain 51831 chr6 171115067 + 85161398 85162000 L1PA5 6144 + 5537 6144 57732 274 3 8 325 chain 5858 chr6 171115067 + 85184420 85184493 MLT1D 503 - 60 133 186605 73 chain 62427 chr6 171115067 + 85184829 85185518 L1PA4 6152 - 1684 2377 51711 116 0 4 573 chain 149840 chr6 171115067 + 85185519 85187212 L1PA4 6152 + 4449 6143 24638 1426 0 1 267 chain 20023 chr6 171115067 + 85198274 85198640 THE1C 375 - 0 359 127073 177 18 12 66 74 73 31 chain 7848 chr6 171115067 + 85207264 85207396 L1PA8 5853 + 5633 5762 172011 38 2 0 5 12 12 52 2 1 21 chain 113760 chr6 171115067 + 85214251 85215548 L1PA5 6144 - 12 1312 33159 327 2 1 283 0 2 217 1 3 467 chain 8282 chr6 171115067 + 85215548 85215644 THE1B-int 1605 + 1487 1596 169505 14 0 13 82 chain 29293 chr6 171115067 + 85223385 85223997 L1PB1 5432 - 8 557 87608 4 1 0 16 1 0 13 1 0 21 0 1 4 5 3 16 2 0 14 14 11 12 21 8 20 1 0 44 8 7 9 2 1 47 33 26 11 1 0 19 5 0 9 20 0 8 5 0 47 18 18 160 chain 436377 chr6 171115067 + 85250228 85255493 L1PA7 6471 + 0 6461 9155 80 0 2 167 42 27 127 1 2 418 0 8 1808 0 2 442 0 1196 345 1 0 318 8 7 247 0 1 193 0 2 228 2 1 82 0 1 416 0 1 340 chain 28634 chr6 171115067 + 85268698 85269013 AluYa5 310 - 2 310 90585 176 6 0 39 1 0 93 chain 6666 chr6 171115067 + 85271564 85271680 L1MA3 4352 + 2447 2555 179937 7 0 1 56 20 11 33 chain 2978 chr6 171115067 + 85278594 85278628 LTR50 688 - 345 379 225480 34 chain 12226 chr6 171115067 + 85287649 85287839 Tigger3a 397 + 158 323 151318 63 0 1 15 28 0 79 0 2 5 chain 53579 chr6 171115067 + 85294627 85295218 L1PA4 6152 - 1438 2029 56623 591 chain 123950 chr6 171115067 + 85295223 85296630 L1PA4 6152 + 4735 6151 29715 755 1 4 182 0 2 42 0 1 96 1 2 184 0 2 146 chain 107602 chr6 171115067 + 85296968 85298485 LTR12C 1709 + 0 1709 34828 300 1 2 36 3 46 80 0 1 22 4 5 44 6 1 118 0 278 143 0 1 35 1 0 6 2 0 106 0 4 158 149 21 111 1 0 191 chain 242335 chr6 171115067 + 85311929 85314677 L1PA5 6144 + 3383 6131 16654 4 0 1 25 1 0 2718 chain 563425 chr6 171115067 + 85318154 85324181 L1HS 6032 + 0 6032 257 2387 0 1 2794 0 4 846 chain 545821 chr6 171115067 + 85336073 85342084 L1PA2 6032 + 2 6032 1972 453 0 1 247 1 8 1056 1 10 86 1 0 1224 1 0 2095 0 4 846 chain 76424 chr6 171115067 + 85346123 85347014 L1PA4 6152 - 12 924 45244 136 0 1 8 0 12 77 0 1 31 0 6 464 1 2 174 chain 538154 chr6 171115067 + 85409055 85415199 L1PA4 6152 + 3 6143 3124 533 4 0 340 0 1 359 1 0 309 12 0 440 1 0 635 0 5 452 0 1 438 1 0 96 0 2 429 0 1 245 0 1 992 0 4 857 chain 362406 chr6 171115067 + 85423622 85427907 HERV17-int 4347 - 0 4309 11309 35 0 4 348 0 10 172 1 0 631 1 0 85 0 1 249 0 6 1334 1 2 113 1 3 102 0 1 338 0 3 156 16 19 84 1 0 79 4 3 37 0 1 392 1 0 27 2 0 34 1 0 40 chain 6566 chr6 171115067 + 85436518 85436602 MSTC 436 + 0 88 180732 14 0 4 70 chain 29839 chr6 171115067 + 85436614 85437023 L1PA8 5853 + 5451 5853 85317 22 0 1 59 1 0 29 1 0 46 2 0 70 2 1 8 2 0 5 0 1 43 7 6 18 1 0 93 chain 4797 chr6 171115067 + 85456436 85456492 U6 107 + 6 62 197385 56 chain 21773 chr6 171115067 + 85497928 85498341 L1PB1 5432 + 5043 5422 121123 61 3 1 9 1 0 24 1 0 9 1 0 11 5 1 9 2 0 52 2 1 16 1 0 44 6 6 9 3 0 6 16 6 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 29459 chr6 171115067 + 85503960 85504269 AluYa5 310 - 1 310 86797 309 chain 23155 chr6 171115067 + 85506058 85506376 THE1B 368 + 0 324 114870 44 0 6 6 0 9 107 8 7 16 8 0 129 chain 12217 chr6 171115067 + 85522108 85522334 MER57B2 428 - 0 428 151354 58 25 242 52 25 10 66 chain 13276 chr6 171115067 + 85523993 85524166 THE1C 375 + 196 375 147188 5 0 3 117 0 4 25 1 0 25 chain 438954 chr6 171115067 + 85527321 85532727 L1PA7 6471 - 10 5466 9082 140 7 0 7 0 7 358 0 18 11 0 1 575 12 13 87 1 0 4 4 8 152 7 6 79 7 8 1337 0 1 77 9 0 19 0 4 362 0 3 84 0 4 423 0 1 33 2 3 226 0 1 187 0 2 858 1 0 4 12 12 4 0 1 53 17 36 247 chain 31653 chr6 171115067 + 85533038 85533470 MLT2A1 477 + 2 470 81401 140 0 1 25 2 6 150 1 0 61 17 49 36 chain 539335 chr6 171115067 + 85536148 85542270 L1PA4 6152 - 0 6130 2922 517 0 18 6 18 0 309 0 4 859 0 1 317 1 0 439 1 0 1096 0 2 270 0 1 1241 0 1 710 0 1 338 chain 22863 chr6 171115067 + 85544538 85544893 THE1D 372 + 0 372 116271 56 4 19 25 3 4 62 27 30 29 1 0 111 2 1 35 chain 2985 chr6 171115067 + 85546983 85547022 MADE1 96 - 3 83 225334 30 0 41 9 chain 395338 chr6 171115067 + 85547052 85552203 L1PA7 6471 - 1 4840 10263 161 0 1 100 1 2 587 1 0 1226 2 1 134 0 1 50 2 1 105 314 0 570 1 3 127 7 0 241 0 13 61 1 0 6 2 3 369 0 4 68 10 0 553 0 1 205 2 0 52 1 2 192 chain 3316 chr6 171115067 + 85567845 85567881 MIRb 242 + 25 61 218654 36 chain 81618 chr6 171115067 + 85574431 85575388 L1PA4 6152 + 5048 5946 42918 478 59 0 420 chain 84853 chr6 171115067 + 85588940 85589943 L1PA6 6164 - 2 1007 41571 6 5 0 98 0 3 559 0 4 147 0 1 36 1 0 151 chain 24840 chr6 171115067 + 85600465 85600738 L1PA3long 6157 + 5884 6157 105678 273 chain 32232 chr6 171115067 + 85612944 85613433 MLT2A1 477 - 0 477 80467 51 56 41 4 1 0 57 1 0 151 1 5 27 0 1 140 chain 6147 chr6 171115067 + 85639197 85639273 MLT1B 390 - 10 87 184014 29 0 1 47 chain 479058 chr6 171115067 + 85645648 85651836 L1PA6 6164 + 0 6147 7763 335 99 80 6 6 0 29 19 0 116 79 3 150 19 34 52 1 18 209 0 1 219 5 12 297 1 2 77 5 12 568 0 1 52 2 10 51 1 0 856 0 1 248 9 13 59 12 13 148 0 9 27 2 0 295 0 8 1991 2 3 10 0 1 131 chain 41307 chr6 171115067 + 85653935 85654388 HERV17-int 4347 + 3894 4347 67526 453 chain 29096 chr6 171115067 + 85654702 85655028 LTR17 781 + 0 326 88570 326 chain 7519 chr6 171115067 + 85659693 85659806 L1PA8 5853 - 0 112 174047 84 10 9 19 chain 28474 chr6 171115067 + 85665644 85666025 THE1B-int 1605 + 0 429 91292 49 0 14 111 0 24 32 5 11 101 0 2 63 0 2 20 chain 154780 chr6 171115067 + 85666025 85667771 L1PA4 6152 - 2 1747 24004 145 5 8 242 5 1 1349 chain 40792 chr6 171115067 + 85672555 85673080 LTR10G 522 - 0 522 68186 69 10 7 93 0 1 239 3 2 111 chain 37757 chr6 171115067 + 85677812 85678317 LTR10G 522 - 0 522 72481 57 0 18 92 5 4 36 5 6 196 1 0 113 chain 11791 chr6 171115067 + 85691188 85691322 L1PA6 6164 + 1429 1563 153084 134 chain 354280 chr6 171115067 + 85691323 85695573 L1PA6 6164 + 1565 5992 11497 262 0 2 505 9 6 721 33 31 104 0 1 389 0 1 111 3 0 782 0 159 229 0 1 377 0 16 51 0 3 77 1 0 112 0 1 4 0 1 383 0 1 97 chain 12380 chr6 171115067 + 85695586 85695735 L1PA6 6164 + 6007 6154 150709 11 2 0 136 chain 4559 chr6 171115067 + 85697037 85697087 L1PA11 4918 + 770 820 200115 50 chain 258740 chr6 171115067 + 85697659 85702741 L1PA11 4918 + 3 4578 15763 39 4 3 33 4 1 25 2 0 12 0 2 12 7 5 46 1 0 32 2 0 5 2 1 87 0 1 44 0 5 46 8 10 102 1 3 11 19 19 319 1 0 169 7 8 173 0 2 16 0 2 172 2 1 65 1192 815 80 304 0 32 0 1 143 6 10 111 0 2 174 3 4 729 6 12 31 24 209 28 0 1 367 1 0 19 1 0 6 0 1 5 0 1 73 7 0 62 7 6 10 3 0 66 2 0 17 1 0 19 4 0 9 7 3 10 13 9 15 1 0 13 2 0 11 chain 35958 chr6 171115067 + 85703390 85703772 L1PA2 6032 + 5643 6025 74947 382 chain 13669 chr6 171115067 + 85709376 85709560 MER61A 341 + 0 183 145712 22 15 14 147 chain 24506 chr6 171115067 + 85718384 85718786 MSTA 426 + 0 407 107508 99 0 15 3 10 0 16 1 0 11 7 11 50 3 1 18 35 33 4 0 1 145 chain 16186 chr6 171115067 + 85723725 85723905 L1PA4 6152 + 5971 6151 137800 180 chain 30363 chr6 171115067 + 85730432 85730798 L1PA8A 6298 + 5917 6287 83753 35 0 4 331 chain 12116 chr6 171115067 + 85734339 85734583 L1PB1 5432 + 5170 5392 151756 47 21 19 45 1 0 7 4 0 8 21 12 18 3 1 5 1 0 14 2 0 24 1 0 22 chain 7155 chr6 171115067 + 85753245 85753332 MLT1C 463 + 348 439 176369 6 0 4 81 chain 93392 chr6 171115067 + 85754865 85755997 L1PA7 6471 + 5308 6470 38537 264 0 24 24 8 12 263 1 3 572 chain 5646 chr6 171115067 + 85779687 85779750 THE1B 368 - 62 125 188600 63 chain 165385 chr6 171115067 + 85779769 85782085 L1PA7 6471 + 4471 6468 22606 807 308 0 309 4 0 34 1 0 22 10 3 52 4 6 552 0 1 202 2 0 9 chain 4506 chr6 171115067 + 85792156 85792220 L1PB3 3668 + 3504 3566 200712 24 3 1 37 chain 8459 chr6 171115067 + 85794468 85794562 L1PA8A 6298 - 298 392 168522 94 chain 9237 chr6 171115067 + 85794562 85794674 L1PA8A 6298 + 6179 6291 164369 112 chain 13003 chr6 171115067 + 85795691 85795888 L1PA16 3655 - 116 329 148239 67 14 27 29 0 1 38 1 3 48 chain 18704 chr6 171115067 + 85802682 85803018 HERV9-int 5642 + 5338 5642 130933 119 5 3 25 0 2 10 3 1 26 7 6 55 1 0 13 27 5 19 9 3 17 chain 33323 chr6 171115067 + 85838026 85838559 MLT2A1 477 + 0 477 78700 149 3 4 15 5 2 9 0 1 23 1 2 180 4 0 9 80 28 55 chain 357182 chr6 171115067 + 85855334 85859768 L1PA7 6471 - 6 4469 11428 7 0 2 157 3 4 68 0 3 87 0 1 182 0 1 204 0 1 127 2 0 271 0 1 369 3 4 28 3 6 469 0 1 174 4 0 94 0 13 181 14 0 181 1 0 75 0 1 176 0 1 89 0 1 160 0 1 225 0 4 246 0 1 153 4 5 50 0 2 14 0 1 370 0 1 32 2 5 52 3 8 52 2 0 62 0 1 4 0 1 34 chain 5287 chr6 171115067 + 85859778 85859854 L1M3 994 - 628 707 192138 64 2 5 10 chain 66624 chr6 171115067 + 85863763 85864482 L1PA3long 6157 + 5438 6157 49819 719 chain 243906 chr6 171115067 + 85884006 85887699 L1MA1 4479 - 289 4251 16570 18 18 11 10 1 0 9 1 0 23 0 1 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17 33 32 19 1 0 93 chain 12202 chr6 171115067 + 85909731 85909881 MER1A 529 - 117 267 151417 150 chain 6540 chr6 171115067 + 85909902 85909977 L1PA7 6471 + 2082 2157 180916 75 chain 487128 chr6 171115067 + 85910146 85923351 L1PA7 6471 - 5 6471 7476 287 0 1 335 15 17 207 2 0 16 0 4 97 15 0 8 17 0 107 7 8 171 2 1 55 2 3 9 0 1 190 2 1 27 6756 0 342 0 1 49 5 7 74 2 1 5 0 1 69 0 54 229 3 0 5 0 3 253 0 1 279 4 8 10 6 1 7 0 1 889 3 1 392 0 5 62 0 1 392 5 7 12 0 1 154 0 4 111 0 1 264 19 2 513 8 11 12 0 1 280 0 3 279 18 1 123 chain 469438 chr6 171115067 + 85911721 85917837 L1PA6 6164 + 0 6142 8054 394 20 21 34 19 0 66 9 15 37 1 0 8 5 6 206 0 17 232 6 7 380 0 1 37 2 1 833 0 10 29 1 0 256 9 12 572 2 0 13 4 5 28 1 2 50 1 2 32 5 4 213 1 0 166 23 11 32 13 14 24 5 6 87 0 1 353 0 4 457 0 1 109 0 2 85 0 1 245 0 1 128 0 1 66 0 3 68 0 1 316 0 2 186 7 8 74 8 8 19 2 0 11 1 4 125 chain 56183 chr6 171115067 + 85917837 85918446 L1PA3long 6157 + 5548 6157 55023 609 chain 346879 chr6 171115067 + 85923357 85927661 L1PA7 6471 + 2149 6454 11697 324 0 1 150 0 8 7 9 0 439 11 11 13 1 3 416 0 1 11 5 0 207 0 1 95 9 8 165 0 2 142 0 1 852 0 1 610 1 4 6 4 0 827 chain 21590 chr6 171115067 + 85937136 85937475 THE1B 368 - 12 368 121805 15 0 5 144 26 23 83 27 42 44 chain 4376 chr6 171115067 + 85957705 85957755 L1PA16 3655 - 1220 1270 202245 50 chain 4642 chr6 171115067 + 85970097 85970172 MER113 458 - 153 224 199157 37 0 1 13 5 0 6 1 0 4 0 1 9 chain 62535 chr6 171115067 + 85976354 85977077 L1PA5 6144 - 6 721 51661 320 6 0 345 2 0 50 chain 12033 chr6 171115067 + 85977077 85977241 THE1B 368 - 187 368 152061 13 1 0 26 1 5 29 1 0 53 0 15 40 chain 20352 chr6 171115067 + 85996528 85996758 L1PA5 6144 - 13 244 126056 135 1 2 94 chain 8020 chr6 171115067 + 85998789 85998876 L1PA6 6164 + 4981 5068 170934 87 chain 92421 chr6 171115067 + 85998876 85999945 L1PA6 6164 + 5076 6162 38838 196 1 0 573 0 21 288 3 0 8 chain 4157 chr6 171115067 + 86000706 86000750 L1PA6 6164 + 5801 5845 205132 44 chain 11652 chr6 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28056 chr6 171115067 + 86090968 86091268 AluYk11 308 + 0 300 92805 300 chain 25598 chr6 171115067 + 86106542 86106856 L1PA15 4387 + 2848 3166 101739 137 0 3 144 0 1 33 chain 30644 chr6 171115067 + 86114008 86114437 LTR7B 505 + 0 505 83131 48 0 1 59 0 10 57 0 38 12 3 27 26 0 2 82 1 0 29 5 8 42 14 13 51 chain 12124 chr6 171115067 + 86140287 86140423 L1PA7 6471 + 6001 6137 151716 136 chain 26003 chr6 171115067 + 86140427 86140754 L1PA7 6471 + 6140 6469 100000 316 0 2 11 chain 42555 chr6 171115067 + 86143507 86144213 L1PA14 3548 - 92 781 65954 41 1 0 11 7 6 5 1 0 13 2 0 37 20 15 105 4 3 83 1 0 6 2 0 11 0 6 109 8 4 31 25 22 9 3 1 171 chain 29570 chr6 171115067 + 86144311 86144630 AluYb8 318 + 0 316 86328 132 3 0 184 chain 40547 chr6 171115067 + 86146933 86147476 MER41A 554 + 0 547 68520 87 5 6 75 1 2 18 0 1 241 5 6 111 chain 141335 chr6 171115067 + 86147614 86149195 L1PA4 6152 - 0 1589 25932 1239 0 8 342 chain 79651 chr6 171115067 + 86195602 86196496 MER11D 897 - 0 897 43756 324 0 3 570 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3 26 0 4 25 0 3 151 0 6 348 1 16 266 0 6 257 0 1 44 1 5 274 3 1 43 0 1 442 0 1 178 1 0 464 8 22 170 1 0 95 0 1 96 chain 24054 chr6 171115067 + 86298018 86298293 AluYk4 311 + 9 281 110023 117 4 0 134 0 1 20 chain 14143 chr6 171115067 + 86358938 86359127 L1MC2 1988 + 1476 1664 144060 155 1 0 33 chain 19243 chr6 171115067 + 86371649 86372247 L1MA5A 2387 - 192 463 129404 14 1 0 9 0 2 15 2 0 47 1 0 75 5 0 11 320 0 98 chain 3266 chr6 171115067 + 86376596 86376631 MER2B 336 + 163 198 219655 35 chain 4210 chr6 171115067 + 86376864 86376916 Tigger2 2703 - 1674 1726 204424 52 chain 529114 chr6 171115067 + 86404517 86410601 L1PA5 6144 - 0 6139 4285 796 0 3 44 0 4 614 0 6 684 0 2 826 1 16 579 0 3 542 0 10 299 0 1 144 9 4 994 10 27 450 2 1 90 chain 4083 chr6 171115067 + 86414247 86414303 MSTA 426 + 370 426 206158 25 0 1 4 1 0 26 chain 28210 chr6 171115067 + 86417274 86417627 THE1A 353 - 0 344 92268 173 0 1 6 1 0 63 2 1 27 8 0 73 chain 137645 chr6 171115067 + 86418718 86420385 L1PA7 6471 - 4 1667 26534 335 0 1 431 0 2 70 8 7 258 2 1 145 0 1 52 6 0 360 chain 73657 chr6 171115067 + 86426139 86426958 L1PA5 6144 - 4 882 46706 463 1 0 343 0 60 12 chain 39757 chr6 171115067 + 86427331 86427769 L1PA3long 6157 + 5711 6149 69674 438 chain 6901 chr6 171115067 + 86430201 86430276 L1PA3long 6157 - 2 77 178188 75 chain 9329 chr6 171115067 + 86438782 86438883 L1PA5 6144 - 6 107 163902 101 chain 13753 chr6 171115067 + 86438927 86439276 L1PB1 5432 - 2 318 145425 4 1 0 13 1 0 12 2 1 7 1 0 23 1 0 24 2 0 14 11 8 11 9 0 13 7 4 14 6 5 40 1 0 16 34 33 20 2 0 9 5 1 14 1 0 6 1 0 24 chain 4321 chr6 171115067 + 86442096 86442142 L1HS 6032 - 4016 4062 202943 46 chain 29240 chr6 171115067 + 86442142 86442455 L1PA2 6032 + 5719 6032 87842 313 chain 148617 chr6 171115067 + 86450777 86452977 L1PB1 5432 - 8 2104 24801 4 1 0 16 1 0 14 1 0 20 1 0 24 2 0 9 13 10 18 28 15 11 5 4 42 1 0 16 3 2 52 28 21 8 1 0 23 48 12 4 0 1 45 16 16 196 4 7 46 45 0 159 4 0 117 26 30 270 0 1 4 0 2 379 0 1 93 2 4 400 chain 5912 chr6 171115067 + 86455591 86455665 MLT2A2 560 + 486 560 186076 74 chain 37560 chr6 171115067 + 86457980 86458425 L1PA6 6164 - 3 442 72737 110 5 0 43 1 0 286 chain 279397 chr6 171115067 + 86461381 86464733 L1P2 5180 + 2 3377 14669 148 2 1 21 0 1 21 1 0 49 1 0 165 0 4 6 10 6 91 1 0 272 0 15 266 0 1 147 2 3 197 0 1 53 0 1 112 0 3 731 2 1 308 0 5 746 chain 477377 chr6 171115067 + 86467031 86472429 L1PA3long 6157 - 0 5414 7819 114 0 7 386 1 0 3 6 0 1177 0 1 111 0 4 1851 0 1 644 1 0 334 16 17 60 0 1 435 0 7 27 0 2 232 chain 23789 chr6 171115067 + 86472805 86473134 L1PB2 3958 - 120 447 111538 63 1 0 17 4 3 74 1 0 64 1 0 60 1 4 8 1 0 34 chain 94249 chr6 171115067 + 86479771 86481290 L1PB1 5432 - 2 1481 38279 7 1 0 9 18 15 7 1 0 22 1 0 21 29 24 26 10 0 3 2 0 16 1 0 44 1 0 15 2 1 30 22 34 12 1 0 10 10 9 11 13 11 19 0 3 42 16 15 20 0 1 201 15 23 70 0 1 78 3 0 7 2 0 28 5 0 345 0 1 24 16 0 195 14 4 58 5 6 11 chain 27418 chr6 171115067 + 86485898 86488139 L1M1 2793 - 539 2239 94910 47 5 4 66 1457 995 136 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16 397 0 1 360 chain 119206 chr6 171115067 + 86603585 86604918 L1PA4 6152 - 16 1351 31331 132 0 1 638 0 1 563 chain 160366 chr6 171115067 + 86604924 86606815 L1P1 4361 - 2454 4356 23291 1125 0 1 4 1 0 223 0 1 21 0 10 517 chain 148512 chr6 171115067 + 86606860 86608918 MER4-int 2692 + 579 2692 24818 135 7 6 87 4 6 42 0 5 66 4 3 79 7 9 295 2 0 111 5 6 26 18 20 163 0 2 112 1 3 134 1 0 56 0 4 30 0 1 21 11 24 116 0 2 118 16 23 25 0 4 153 3 2 89 1 16 10 1 0 109 chain 451736 chr6 171115067 + 86612753 86618878 L1PA7 6471 - 1 6466 8711 12 0 1 148 1 2 318 1 2 264 1 0 19 10 11 54 0 1 17 1 0 535 0 5 711 0 1 5 1 0 5 0 1 99 1 2 1383 0 1 239 0 2 92 8 8 70 0 1 200 1 0 119 0 1 322 0 12 246 1 0 408 0 11 26 17 0 48 3 24 172 5 81 29 297 522 29 50 49 157 chain 85725 chr6 171115067 + 86618993 86620014 L1PA6 6164 + 5134 6162 41258 180 0 8 832 1 0 8 chain 5665 chr6 171115067 + 86633405 86633472 LTR41 747 + 661 729 188428 55 0 1 12 chain 114455 chr6 171115067 + 86634251 86635911 L1PB1 5432 - 10 1634 32957 18 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96 178500 46 2 3 46 chain 79106 chr6 171115067 + 86848352 86849618 L1PB1 5432 + 4211 5427 43997 123 0 1 10 0 1 31 0 3 5 10 6 81 14 14 146 12 8 36 15 18 406 15 0 14 1 0 24 1 0 5 4 3 12 15 9 52 3 2 16 1 0 43 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 17 14 13 4 1 0 18 2 0 5 chain 3558 chr6 171115067 + 86852963 86853007 MLT1D 503 + 459 502 214363 33 1 0 10 chain 51213 chr6 171115067 + 86856431 86857056 LTR14B 630 + 0 630 58181 541 6 11 78 chain 6452 chr6 171115067 + 86869355 86869566 L1PREC2 3366 + 2759 2951 181627 38 11 10 40 97 79 25 chain 261821 chr6 171115067 + 86873287 86876851 L1PB1 5432 + 1418 5047 15600 283 2 1 72 1 2 101 17 20 15 0 2 111 0 1 16 0 1 13 0 12 295 0 2 71 2 0 64 4 1 9 0 5 74 0 4 226 0 2 735 5 44 138 15 11 199 9 8 112 5 12 118 0 1 28 11 12 63 0 2 74 1 0 5 3 4 36 5 0 131 2 0 63 19 19 77 0 1 98 4 3 232 chain 26628 chr6 171115067 + 86881023 86881319 L1PA3long 6157 + 5783 6079 97563 296 chain 43117 chr6 171115067 + 86881903 86882437 MLT2A2 560 + 0 545 65272 402 1 12 131 chain 87285 chr6 171115067 + 86884363 86885368 LTR13 1007 - 0 1007 40652 329 0 1 279 0 1 4 1 0 7 0 1 385 chain 389174 chr6 171115067 + 86887922 86893337 L1PB1 5432 - 19 5400 10477 9 1 0 13 1 0 19 1 2 19 7 5 19 3 0 18 27 16 12 1 0 44 1 0 16 2 1 51 2 0 11 20 15 9 1 0 20 3 0 9 1 2 11 0 1 94 1 0 282 0 1 81 0 2 10 11 4 106 27 31 93 0 2 357 3 0 72 1 0 81 0 1 74 0 1 60 8 10 154 0 2 753 0 1 206 4 8 9 1 0 4 0 1 96 13 1 214 0 4 133 1 3 148 24 16 258 0 1 297 35 29 92 1 0 64 1 2 259 3 4 105 0 1 101 0 1 191 11 13 134 4 3 173 1 0 4 0 1 160 8 10 41 chain 14657 chr6 171115067 + 86899705 86899921 L1PA8 5853 - 6 216 142402 86 2 1 19 2 1 39 0 2 7 1 0 4 2 0 10 3 0 41 chain 34893 chr6 171115067 + 86914722 86915100 L1PA2 6032 + 5653 6031 76350 378 chain 4787 chr6 171115067 + 86915300 86915377 MER34B 572 - 39 114 197498 14 8 6 55 chain 22968 chr6 171115067 + 86915712 86916109 LTR3 431 - 18 402 115760 29 0 6 73 95 75 181 0 1 19 chain 13729 chr6 171115067 + 86919968 86920151 L1PA8A 6298 + 5998 6185 145509 60 8 12 115 chain 165673 chr6 171115067 + 86920678 86922506 L1PA3long 6157 + 4328 6157 22557 155 0 1 1673 chain 3371 chr6 171115067 + 86928198 86928250 MER2 342 - 148 201 217643 33 3 4 16 chain 316472 chr6 171115067 + 86933405 86938539 L1PA7 6471 - 6 6468 12744 11 5 0 317 0 1 577 0 4 880 0 4 36 0 1 135 0 1 5 1001 2339 125 0 2 71 0 1 99 2 0 515 5 7 66 21 0 202 70 70 577 8 9 239 4 5 163 chain 52794 chr6 171115067 + 86935387 86935959 L1PA4 6152 - 3 575 57135 572 chain 500231 chr6 171115067 + 86945938 86952876 L1PA7 6471 + 0 6469 6825 244 6 12 147 2 0 92 29 29 83 18 19 758 2 3 70 0 9 26 0 1 266 0 1 247 104 0 3 46 0 131 0 1 220 0 1 157 0 2 14 5 10 59 1 0 27 0 2 284 7 8 170 0 4 122 8 9 93 1 2 158 1 2 17 1 0 77 0 5 238 7 8 39 0 1 334 0 1 81 0 1 381 0 8 141 0 4 126 2 1 20 11 12 640 0 3 347 372 0 160 0 1 92 11 7 82 0 1 145 3 0 10 chain 1643 chr6 171115067 + 86948039 86948081 L1PA7 6471 + 2110 2152 198116 42 chain 9857 chr6 171115067 + 86955367 86955547 L1PB4 2604 - 58 239 161305 61 0 6 10 33 31 61 3 0 12 chain 20552 chr6 171115067 + 86963125 86963368 L1P1 4361 + 55 298 125466 243 chain 36127 chr6 171115067 + 86963369 86963794 L1PA4 6152 + 5714 6143 74731 382 0 4 43 chain 30691 chr6 171115067 + 86967091 86967448 L1PA5 6144 - 6 370 83049 132 3 10 222 chain 511555 chr6 171115067 + 86976266 86982371 L1PA6 6164 - 8 6164 6021 140 2 3 697 0 4 63 1 0 605 1 2 411 0 2 532 2 0 367 3 6 5 3 0 129 5 7 137 1 8 648 0 2 416 0 9 1139 0 17 55 1 7 178 1 0 48 0 2 278 1 3 236 chain 531212 chr6 171115067 + 86987876 86995336 L1PA4 6152 - 6 6146 4056 352 0 1 91 0 1 393 0 4 30 3 2 644 0 1 271 0 2 413 0 1 247 0 2 469 0 1 43 0 1 1217 0 9 679 0 1 535 1 0 451 1342 0 279 chain 109504 chr6 171115067 + 86993719 86995057 LTR12C 1709 - 0 1709 34317 82 1 0 399 0 4 31 0 207 132 0 118 357 0 43 336 chain 4877 chr6 171115067 + 86997168 86997265 LTR8 732 - 150 248 196517 43 26 27 28 chain 90911 chr6 171115067 + 87002870 87003965 L1PA7 6471 - 2 1096 39322 12 1 0 5 2 0 264 0 1 462 1 3 101 1 0 246 chain 495652 chr6 171115067 + 87009809 87017066 L1PA7 6471 - 32 6471 7092 555 0 1 145 0 1 4 1 0 105 7 11 40 12 12 249 0 1 85 1 2 642 0 1 581 0 3 389 1 0 50 9 13 20 11 0 27 1 2 342 1 0 294 806 0 160 0 1 41 0 2 13 0 3 7 28 0 402 11 14 22 0 1 262 1 2 175 2 0 198 1 0 99 16 14 5 0 2 9 0 1 376 9 10 326 10 15 54 11 12 114 4 5 11 2 0 46 39 36 22 0 1 403 chain 61628 chr6 171115067 + 87013466 87014187 L1PA4 6152 - 9 722 52068 62 9 0 77 0 1 573 chain 19475 chr6 171115067 + 87026632 87026873 L1PA3long 6157 - 2 239 128732 168 12 8 61 chain 4443 chr6 171115067 + 87029445 87029499 MER57B1 401 + 0 54 201421 54 chain 166542 chr6 171115067 + 87032919 87035638 MER57-int 2662 + 41 2658 22454 29 45 30 8 1 0 46 5 6 17 0 13 115 1 3 5 2 0 138 5 1 229 3 4 128 2 0 85 17 21 164 12 8 103 4 11 5 7 0 12 8 5 22 1 18 7 10 0 95 4 6 22 3 2 100 0 16 9 19 4 178 1 0 86 0 1 30 35 18 15 0 2 50 3 0 419 8 7 90 23 17 44 181 108 32 3 0 33 chain 18026 chr6 171115067 + 87057338 87057704 THE1B 368 - 0 368 132788 31 33 31 63 65 68 52 16 17 106 chain 4939 chr6 171115067 + 87057774 87057911 L1MA3 4352 + 3106 3250 195803 16 3 8 11 40 41 44 2 3 21 chain 6297 chr6 171115067 + 87074516 87074601 MLT1B 390 - 17 111 182821 20 0 9 65 chain 5088 chr6 171115067 + 87084062 87084123 L1M4c 1769 - 274 335 194195 61 chain 516181 chr6 171115067 + 87102321 87108448 L1PA5 6144 + 0 6135 5560 27 0 1 92 0 14 894 1 2 4 1 0 133 9 0 470 0 1 672 1 0 119 0 9 283 6 7 429 0 1 12 1 0 839 2 0 450 7 0 1495 3 4 177 chain 26345 chr6 171115067 + 87119821 87120144 L1PA5 6144 - 0 323 98633 139 1 8 15 7 0 161 chain 22656 chr6 171115067 + 87120144 87120392 L1PA5 6144 + 5553 5801 117295 248 chain 28145 chr6 171115067 + 87162168 87162519 THE1A 353 + 2 353 92479 82 0 1 25 1 0 243 chain 74601 chr6 171115067 + 87162520 87163488 THE1A-int 1579 + 1 1574 46208 167 8 9 89 1 3 185 8 8 252 0 602 258 chain 57037 chr6 171115067 + 87174764 87175511 L1PA8 5853 + 5113 5853 54511 451 2 1 45 2 0 68 13 11 51 2 1 16 5 4 92 chain 41482 chr6 171115067 + 87182744 87183268 LTR6B 557 + 0 557 67303 22 0 27 6 1 2 302 0 1 41 0 2 90 0 1 6 0 1 56 chain 62059 chr6 171115067 + 87187064 87189382 HERVS71-int 4705 + 2488 4446 51871 6 1 0 11 2 1 12 4 1 38 12 11 21 67 65 15 3 1 17 2 0 11 73 63 9 1 0 16 88 71 10 1 0 8 2 0 37 2 0 8 1 0 10 1 0 5 93 19 17 6 5 14 1 0 4 9 7 19 70 53 10 0 39 10 55 0 38 1 0 17 1 0 6 4 2 15 5 2 19 14 12 11 3 0 6 1 0 12 15 9 12 23 17 9 1 0 5 1 0 23 22 18 8 1 0 7 1 0 16 1 0 18 2 0 56 25 20 6 1 0 29 1 0 33 5 2 50 7 5 16 1 0 34 2 1 6 1 0 13 1 0 15 2 0 10 3 0 5 1 0 29 1 0 7 7 4 4 1 0 31 4 0 23 15 12 31 4 1 22 1 0 17 9 6 26 2 0 14 1 0 21 1 0 45 1 0 6 43 36 43 1 0 8 1 0 10 2 1 12 2 0 17 2 0 8 2 0 22 302 201 6 0 6 20 2 1 12 22 14 15 chain 37466 chr6 171115067 + 87190883 87191369 LTR6B 557 + 57 544 72866 302 0 1 41 2 1 73 1 0 6 12 13 6 0 1 43 chain 528190 chr6 171115067 + 87201866 87207967 L1PA4 6152 - 28 6146 4384 815 0 3 293 1 2 196 0 2 453 0 2 171 0 3 243 1 2 680 0 5 1075 0 1 4 1 0 740 1 0 852 0 1 575 chain 47920 chr6 171115067 + 87221903 87222527 PABL_A 660 + 0 652 60544 47 0 3 4 0 1 29 0 9 111 0 19 119 7 3 307 chain 13779 chr6 171115067 + 87224154 87224303 L1PA4 6152 - 9 158 145335 149 chain 109240 chr6 171115067 + 87237527 87238794 L1PA4 6152 - 0 1259 34387 148 0 1 477 1 0 50 0 2 180 11 1 400 chain 5227 chr6 171115067 + 87249425 87249482 MSTA 426 - 10 67 192754 57 chain 31952 chr6 171115067 + 87257906 87258369 LTR19A 502 - 0 502 80935 31 13 14 137 8 9 14 13 13 47 6 5 17 0 37 113 0 1 64 chain 6800 chr6 171115067 + 87259455 87259881 MER4E1 777 + 0 427 57320 24 0 1 171 6 5 64 14 15 147 chain 115628 chr6 171115067 + 87259882 87261230 L1P1 4361 - 2062 3500 32577 22 1 0 573 1 0 29 0 92 722 chain 25167 chr6 171115067 + 87261237 87261525 L1PA5 6144 + 5006 5294 103922 288 chain 71122 chr6 171115067 + 87261525 87262342 L1PA5 6144 + 5297 6114 47877 817 chain 5779 chr6 171115067 + 87262379 87262741 MER4E1 777 + 427 770 57320 35 0 1 75 28 14 135 7 1 82 chain 544659 chr6 171115067 + 87279298 87285435 L1PA3long 6157 + 6 6157 2116 1080 0 3 1191 0 5 2419 0 1 1298 0 5 149 chain 7506 chr6 171115067 + 87285817 87286151 L1PB1 5432 - 24 325 31543 4 1 0 13 1 0 21 1 0 24 62 45 21 1 0 39 5 4 11 0 1 4 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 5 4 16 3 0 7 chain 158095 chr6 171115067 + 87286166 87287975 L1PA5 6144 - 12 1817 23577 1549 4 0 256 chain 70160 chr6 171115067 + 87287976 87291098 L1PB1 5432 - 329 3245 31543 20 0 2 242 5 6 16 0 3 8 5 2 96 13 14 62 4 0 273 0 7 157 9 18 88 1 2 348 1592 1371 38 2 0 143 chain 37927 chr6 171115067 + 87291450 87291959 LTR10F 562 - 0 562 72239 331 3 0 8 28 0 34 0 84 105 chain 289469 chr6 171115067 + 87309574 87313209 HERVH-int 3825 - 0 3825 14055 382 34 35 182 0 1 32 4 5 169 1 0 918 10 15 257 1 8 105 4 31 145 8 0 148 0 1 224 1 0 70 0 2 95 0 4 217 1 0 25 0 209 12 1 0 47 24 0 12 34 1 93 14 15 21 27 26 26 0 1 291 chain 25393 chr6 171115067 + 87315296 87315609 AluYk4 311 + 0 303 102726 126 7 0 171 3 0 6 chain 30340 chr6 171115067 + 87319435 87319928 LTR2B 499 - 0 499 83807 37 14 13 280 0 4 40 8 0 12 59 71 28 1 0 14 chain 21887 chr6 171115067 + 87319991 87320243 L1PA7 6471 + 6203 6451 120676 110 4 0 138 chain 2877 chr6 171115067 + 87335159 87335430 MLT1A0 366 - 79 365 227413 24 103 111 19 107 114 18 chain 113904 chr6 171115067 + 87354875 87356124 L1HS 6032 - 4 1253 33097 1249 chain 207546 chr6 171115067 + 87356124 87358348 L1HS 6032 + 2500 4724 18677 2224 chain 33022 chr6 171115067 + 87361532 87361917 L1P1 4361 - 20 402 79181 12 2 1 23 1 0 155 1 0 191 chain 20531 chr6 171115067 + 87361928 87362160 L1PA3long 6157 + 5925 6156 125542 227 1 0 4 chain 36180 chr6 171115067 + 87367595 87367997 L1PA4 6152 + 5741 6143 74659 402 chain 266780 chr6 171115067 + 87369338 87373382 L1PB1 5432 - 5 3897 15347 5 2 0 18 2 1 11 1 0 14 11 10 22 2 0 14 1 0 4 34 23 5 2 0 4 1 0 16 1 0 42 8 7 10 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 4 3 14 23 23 252 31 30 83 0 3 99 3 0 20 12 0 96 6 7 111 0 1 86 1 4 59 0 9 146 8 9 85 0 1 27 4 5 234 1 5 19 164 0 125 1 0 102 0 2 103 1 2 105 0 1 84 9 20 151 0 1 172 17 18 317 0 1 48 2 1 86 5 6 43 2 3 146 3 4 47 0 2 87 6 21 364 0 1 105 chain 6729 chr6 171115067 + 87371098 87371178 L1PB1 5432 - 1741 1821 179474 80 chain 57650 chr6 171115067 + 87373383 87374215 LTR12 884 + 0 884 54160 94 0 132 132 0 22 195 103 0 291 0 1 17 chain 544824 chr6 171115067 + 87374926 87380956 L1PA2 6032 - 1 6032 2096 1034 0 1 4740 1 0 240 0 1 15 chain 56875 chr6 171115067 + 87381416 87382249 LTR12 884 - 0 884 54617 193 104 1 290 0 22 22 0 132 224 chain 445438 chr6 171115067 + 87384867 87390515 HERV9-int 5642 - 0 5637 8887 17 32 7 10 14 10 14 1 0 59 1 0 26 2 0 39 5 3 62 6 7 100 1 20 39 1 0 492 0 1 65 0 1 63 22 0 114 2 1 164 36 37 1077 6 7 884 1 3 287 0 1 761 0 1 164 3 0 59 80 0 56 7 93 107 1 0 77 4 10 100 6 5 462 45 58 74 chain 57769 chr6 171115067 + 87390541 87391268 LTR12 884 - 0 882 54099 484 0 22 36 1 134 206 chain 527461 chr6 171115067 + 87399108 87405239 L1PA4 6152 - 0 6150 4450 148 0 1 489 0 1 409 0 1 125 0 1 200 0 1 26 0 1 560 0 3 503 1 3 1635 0 2 586 0 4 410 0 2 1039 chain 266268 chr6 171115067 + 87412256 87416105 L1PA10 4194 - 48 3859 15380 29 3 0 586 10 15 80 1 0 23 5 0 276 9 6 100 1 2 75 1 0 13 2 81 37 0 1 116 7 12 18 0 5 21 3 1 26 1 0 92 7 6 63 1 0 62 2 6 23 1 0 141 0 4 21 1 0 241 6 7 181 1 0 8 0 1 46 0 15 57 0 2 87 0 3 6 7 4 348 129 0 87 0 1 193 22 23 75 13 21 208 3 0 101 3 2 4 1 0 77 5 4 8 7 0 13 5 0 12 9 7 7 1 0 21 chain 3782 chr6 171115067 + 87420015 87420100 L1PB4 2604 - 32 117 210634 16 29 29 40 chain 516998 chr6 171115067 + 87441114 87446954 L1PA3long 6157 + 7 6157 5481 734 1 0 718 6 1 40 0 1 75 0 192 359 0 1 12 0 1 562 5 0 113 0 123 238 2 1 2924 0 4 51 chain 32563 chr6 171115067 + 87446964 87447346 L1PA4 6152 + 5768 6151 79921 208 2 3 172 chain 32415 chr6 171115067 + 87447365 87447748 L1PA5 6144 + 5761 6144 80176 233 0 1 137 2 1 11 chain 30103 chr6 171115067 + 87459584 87459897 AluYb8 318 + 0 313 84474 313 chain 10264 chr6 171115067 + 87460359 87460483 L1PA16 3655 - 125 249 159312 124 chain 68570 chr6 171115067 + 87469598 87470518 THE1C-int 1605 + 691 1605 49003 7 5 0 11 3 0 449 12 13 81 23 24 266 1 2 4 1 0 57 chain 18681 chr6 171115067 + 87489365 87489594 AluSp 311 + 82 305 130994 135 6 0 88 chain 132122 chr6 171115067 + 87512983 87516355 L1PA7 6471 - 13 3066 6697 147 1 3 82 2 1 426 0 1 124 0 1 50 1 4 309 347 3 73 0 1 249 0 6 29 7 0 175 0 3 94 0 8 456 0 8 258 0 1 210 0 1 21 10 8 301 chain 552347 chr6 171115067 + 87516381 87522400 L1PA2 6032 - 3 6030 1153 2887 0 5 574 0 1 1601 0 3 405 1 0 551 chain 133571 chr6 171115067 + 87522400 87525809 L1PA7 6471 - 3066 6471 6697 612 8 10 108 16 1 30 1 0 12 0 1 56 0 1 120 1 2 414 6 5 747 17 18 113 3 5 356 0 3 275 0 1 99 12 13 403 chain 26561 chr6 171115067 + 87527348 87527655 AluYk4 311 + 0 301 97803 126 6 0 175 chain 33562 chr6 171115067 + 87529670 87530117 L1PA7 6471 + 6027 6469 78302 123 0 1 147 17 18 146 7 0 7 chain 321690 chr6 171115067 + 87552232 87555811 L1PA3long 6157 - 0 3585 12533 3449 1 6 5 0 1 124 chain 33604 chr6 171115067 + 87571779 87572153 L1PA3long 6157 - 2599 2973 78233 374 chain 43479 chr6 171115067 + 87572153 87572646 L1PA3long 6157 - 2974 3467 64837 493 chain 17084 chr6 171115067 + 87572651 87572838 L1PA3long 6157 + 3566 3753 135370 187 chain 218543 chr6 171115067 + 87572838 87575241 L1PA3long 6157 + 3754 6157 17969 2403 chain 546463 chr6 171115067 + 87582550 87589257 L1PA3long 6157 + 4 6157 1890 978 0 1 1025 0 1 1173 1 2 77 559 0 685 0 1 616 0 1 1593 chain 24361 chr6 171115067 + 87585804 87586082 L1PA3long 6157 + 5879 6157 108314 278 chain 351414 chr6 171115067 + 87590650 87595173 L1PA8 5853 - 0 4538 11558 93 1 0 19 2 1 12 6 7 28 2 1 13 5 4 28 10 11 28 2 0 44 1 0 41 4 5 509 1 0 22 0 1 253 2 1 5 0 1 385 12 12 58 0 1 96 0 2 39 1 0 133 0 2 145 18 19 237 0 2 108 4 5 87 1 2 358 0 1 23 0 1 139 8 10 243 0 7 142 0 1 408 5 1 636 12 14 94 chain 67296 chr6 171115067 + 87603131 87603896 L1HS 6032 + 1841 2607 49526 353 1 2 411 chain 208283 chr6 171115067 + 87603915 87606744 L1PBa 3878 + 865 3712 18619 235 0 1 5 1 0 278 0 14 227 20 6 242 0 3 45 0 1 129 1 5 82 3 1 326 1 0 118 5 9 179 8 10 111 0 2 53 7 5 90 8 10 44 6 9 116 3 0 190 6 8 62 0 1 30 17 19 181 chain 547402 chr6 171115067 + 87607435 87613456 L1PA2 6032 + 12 6032 1779 3278 8 5 892 0 1 1801 0 1 42 chain 2471 chr6 171115067 + 87615843 87615885 MER81 114 + 22 64 233473 11 1 0 5 1 2 24 chain 40661 chr6 171115067 + 87629248 87629770 L1PA8 5853 + 5325 5853 68350 159 4 14 66 1 0 44 2 0 73 1 0 18 0 1 7 0 1 32 2 1 19 1 0 93 chain 556228 chr6 171115067 + 87630884 87637035 L1PA3long 6157 + 0 6157 697 2154 0 1 170 0 1 1942 0 3 712 0 1 1173 chain 38478 chr6 171115067 + 87640553 87640992 L1PA7 6471 - 4 447 71473 13 0 3 319 0 1 107 chain 26456 chr6 171115067 + 87657597 87657951 L1PA8 5853 - 0 347 98219 92 2 1 19 2 1 51 1 0 10 2 1 68 2 0 46 1 0 58 chain 11451 chr6 171115067 + 87675445 87675718 L1PB1 5432 + 5179 5427 154494 40 9 8 9 1 0 45 1 0 15 1 0 4 2 0 11 9 0 10 55 49 22 1 0 12 1 0 18 2 0 5 chain 7120 chr6 171115067 + 87711618 87711818 L1MA3 4352 + 372 571 60285 141 1 0 58 chain 49389 chr6 171115067 + 87711837 87712522 LTR12 884 - 15 884 59456 46 13 13 120 14 118 195 2 0 21 0 91 74 16 7 184 chain 16055 chr6 171115067 + 87712522 87712973 L1MA3 4352 + 571 1021 60285 202 2 0 73 0 1 21 2 0 7 1 0 94 5 8 44 chain 119142 chr6 171115067 + 87718775 87720519 SVA_F 1814 - 0 1479 31362 633 142 0 4 2 0 166 149 22 27 0 15 10 129 0 56 0 1 25 1 0 7 0 120 393 chain 9197 chr6 171115067 + 87719409 87719543 SVA_F 1814 - 683 852 120918 66 0 37 17 1 0 12 1 0 37 chain 3796 chr6 171115067 + 87719793 87719871 SVA_F 1814 - 698 776 145359 78 chain 10960 chr6 171115067 + 87719908 87720026 SVA_F 1814 - 686 804 143216 118 chain 70295 chr6 171115067 + 87723515 87724682 L1PA7 6471 + 5614 6468 48269 110 0 1 71 318 4 372 0 1 12 0 1 273 2 0 9 chain 22723 chr6 171115067 + 87723696 87723972 L1PA6 6164 + 5873 6149 116968 276 chain 365770 chr6 171115067 + 87744738 87749042 L1P1 4361 - 20 4357 11212 12 2 1 21 6 5 152 1 0 166 0 28 708 0 3 850 2 0 458 0 1 233 0 1 618 0 6 7 7 1 4 0 1 511 0 1 136 0 3 410 chain 24469 chr6 171115067 + 87767643 87767927 AluYk4 311 - 17 299 107710 13 2 0 269 chain 53482 chr6 171115067 + 87783334 87783970 PABL_A 660 - 0 660 56696 567 0 9 45 0 15 24 chain 22000 chr6 171115067 + 87818907 87819254 THE1B 368 + 7 368 120228 6 2 0 27 0 5 127 2 1 25 44 54 86 0 2 28 chain 51693 chr6 171115067 + 87828295 87828934 L1PA8 5853 - 0 633 57822 93 1 0 19 2 1 52 2 1 8 1 0 71 2 0 44 1 0 112 0 1 231 chain 512437 chr6 171115067 + 87849407 87855476 L1PA6 6164 + 0 6162 5928 63 4 5 391 7 6 278 0 4 247 0 2 961 0 1 223 0 1 597 0 1 415 1 0 83 0 1 348 0 23 262 0 43 324 0 17 1538 1 0 151 0 2 15 1 6 5 5 0 149 chain 3637 chr6 171115067 + 87875092 87875151 Tigger4b 360 + 30 358 213033 14 0 270 25 1 0 19 chain 6614 chr6 171115067 + 87889770 87889861 MER30 238 - 0 100 180346 39 1 4 37 0 6 14 chain 42553 chr6 171115067 + 87923001 87923574 LTR10A 586 - 13 586 65959 64 8 6 169 1 0 51 2 3 55 0 1 13 19 20 13 0 1 52 1 0 125 chain 143363 chr6 171115067 + 87948407 87950086 SVA_C 1631 - 9 1596 25587 604 42 0 43 46 0 256 3 0 680 1 0 4 chain 3656 chr6 171115067 + 87949096 87949139 SVA_C 1631 - 702 745 168736 43 chain 26406 chr6 171115067 + 87980830 87981140 AluSp 311 - 1 311 98387 310 chain 46742 chr6 171115067 + 87981161 87981826 L1PREC2 3366 - 801 1473 61421 112 0 1 51 31 32 71 0 3 272 5 4 48 0 2 40 8 9 27 chain 507695 chr6 171115067 + 88010771 88016897 L1PA3long 6157 + 8 6152 6350 528 40 39 77 5 7 48 5 12 339 8 9 141 55 55 688 0 1 36 0 1 561 0 2 619 2 0 100 0 2 10 0 1 2021 0 3 550 0 1 146 7 0 7 0 7 133 chain 102474 chr6 171115067 + 88016943 88018100 L1PA5 6144 + 4983 6140 36140 1157 chain 3986 chr6 171115067 + 88023599 88023657 MER5A 189 + 127 184 207601 18 2 1 38 chain 532025 chr6 171115067 + 88033004 88038995 L1PA3long 6157 - 5 6157 3956 9 0 5 587 1 2 389 0 5 801 3 7 426 1 2 1809 0 3 69 5 15 858 0 3 253 0 128 628 0 1 152 chain 9892 chr6 171115067 + 88062992 88063140 L1MA3 4352 + 4171 4311 161110 64 4 0 23 2 0 24 1 0 6 1 0 23 chain 43966 chr6 171115067 + 88073070 88073554 L1PA3long 6157 - 4 488 64244 484 chain 119502 chr6 171115067 + 88078359 88079914 THE1B-int 1605 - 5 1605 31215 77 0 5 241 0 3 201 0 1 52 2 0 313 2 1 65 17 15 111 0 1 47 10 35 64 0 4 95 5 15 234 4 5 15 chain 5921 chr6 171115067 + 88095514 88095591 L1PA8 5853 + 5781 5853 185979 66 5 0 6 chain 13610 chr6 171115067 + 88122918 88123129 L1PB4 2604 + 2314 2528 145934 60 14 9 49 0 2 51 3 9 34 chain 11791 chr6 171115067 + 88153452 88153659 L1PA16 3655 - 36 220 153090 16 1 0 10 19 0 14 13 10 134 chain 100662 chr6 171115067 + 88156360 88157674 L1PA10 4194 - 46 1379 36594 32 3 0 34 0 1 9 0 1 253 1 0 170 10 17 5 1 0 146 0 3 102 13 23 156 11 9 289 0 1 74 0 3 5 chain 19241 chr6 171115067 + 88157688 88157925 L1PA7 6471 - 14 251 129409 237 chain 117277 chr6 171115067 + 88166893 88168675 L1MA3 4352 + 2570 4322 32031 16 4 16 50 0 1 4 0 1 46 3 4 167 1 0 172 0 1 75 12 6 139 0 4 105 1 0 227 0 1 40 0 1 19 37 39 137 7 8 57 0 3 23 0 2 106 0 3 10 1 5 18 77 51 90 27 26 15 2 0 7 0 1 16 1 0 6 1 0 23 29 0 11 chain 7113 chr6 171115067 + 88170243 88170333 L1PA16 3655 + 3488 3578 176663 90 chain 30954 chr6 171115067 + 88188453 88188904 LTR10F 562 - 0 562 82594 24 14 11 27 3 2 14 6 5 72 1 2 174 2 5 9 0 112 105 chain 55205 chr6 171115067 + 88191155 88191880 HERVIP10FH-int 2884 - 2028 2735 55579 61 14 1 72 0 3 172 11 1 147 3 0 37 0 1 148 1 0 15 4 9 40 chain 42915 chr6 171115067 + 88194036 88194589 LTR10F 562 - 8 562 65521 54 7 6 263 3 0 45 1 5 82 0 1 98 chain 4524 chr6 171115067 + 88198162 88198241 U6 107 + 0 78 200497 22 1 0 8 2 0 5 3 4 11 0 1 27 chain 47709 chr6 171115067 + 88248976 88249558 LTR10C 591 + 0 583 60686 33 2 0 305 1 2 168 0 2 73 chain 13544 chr6 171115067 + 88252540 88252692 L1PA4 6152 + 5999 6152 146193 141 0 1 11 chain 3864 chr6 171115067 + 88283297 88283363 L1MB3 1562 + 1480 1548 209385 23 4 7 13 1 0 25 chain 14829 chr6 171115067 + 88294387 88294842 LTR47A 437 - 44 437 141849 83 53 56 18 9 0 17 170 114 105 chain 29563 chr6 171115067 + 88320253 88320570 AluYb8 318 - 1 318 86371 317 chain 27913 chr6 171115067 + 88322795 88323151 THE1B 368 - 0 368 93311 170 2 0 29 1 0 99 11 26 44 chain 117042 chr6 171115067 + 88323156 88324714 THE1B-int 1605 - 5 1605 32111 316 1 2 399 8 16 75 50 52 216 0 1 66 9 34 219 4 6 82 0 3 113 chain 26068 chr6 171115067 + 88324714 88325066 THE1B 368 - 0 368 99761 82 0 2 25 0 2 65 2 0 23 1 0 101 9 24 44 chain 151502 chr6 171115067 + 88334416 88336179 L1PA6 6164 - 2 1774 24396 147 1 0 189 1 0 506 1 5 231 4 9 75 1 2 15 0 1 592 chain 10119 chr6 171115067 + 88339473 88339598 L1PB4 2604 - 58 183 159997 125 chain 29051 chr6 171115067 + 88353799 88354110 AluYa5 310 - 0 310 88758 292 1 0 18 chain 28058 chr6 171115067 + 88417459 88417768 AluYa5 310 - 7 310 92795 6 5 0 204 1 0 93 chain 66289 chr6 171115067 + 88418549 88419284 L1PA5 6144 + 5397 6132 49959 735 chain 6525 chr6 171115067 + 88430631 88430713 U13 108 + 0 82 181054 82 chain 136798 chr6 171115067 + 88445060 88446570 SVA_C 1631 - 0 1613 26680 479 0 3 118 0 91 237 0 8 670 0 1 6 chain 155609 chr6 171115067 + 88460108 88461852 SVA_D 2077 - 2 2075 23908 6 4 0 128 0 20 489 0 176 163 0 101 10 0 38 27 2 1 888 1 0 26 chain 3771 chr6 171115067 + 88463753 88463821 L1PB1 5432 - 19 84 210795 9 1 0 12 6 5 17 1 0 22 chain 23891 chr6 171115067 + 88470193 88470476 AluSp 311 - 17 300 110952 283 chain 3362 chr6 171115067 + 88493832 88494185 MLT1E3 631 + 271 631 217845 12 1 0 15 121 123 20 141 147 20 1 2 8 1 0 13 chain 9019 chr6 171115067 + 88535892 88536003 HY1 111 - 0 111 165495 111 chain 12678 chr6 171115067 + 88547157 88547370 L1MC2 1988 + 900 1128 149547 63 0 1 22 0 1 4 3 0 60 33 49 28 chain 6067 chr6 171115067 + 88557267 88557348 MADE1 96 + 0 96 184680 45 3 18 33 chain 36912 chr6 171115067 + 88571579 88572079 LTR7 482 - 0 482 73642 49 12 14 122 0 31 86 51 0 180 chain 39027 chr6 171115067 + 88591838 88592327 LOR1a 498 - 0 498 70700 188 0 8 254 0 1 47 chain 32858 chr6 171115067 + 88605978 88606373 MLT2A1 477 - 78 477 79442 77 1 0 148 1 5 28 0 1 140 chain 27955 chr6 171115067 + 88646632 88646979 THE1A 353 - 0 345 93146 155 1 0 88 1 0 102 chain 11879 chr6 171115067 + 88675794 88675964 THE1D 372 + 224 372 152703 118 22 0 30 chain 29300 chr6 171115067 + 88697449 88697879 L1PA13 3608 + 3072 3488 87571 56 1 0 31 1 0 114 2 0 63 4 3 23 1 0 15 22 19 47 2 0 5 2 0 20 1 0 20 chain 36870 chr6 171115067 + 88707363 88707823 LTR71A 459 - 0 459 73697 14 2 0 243 2 3 199 chain 23743 chr6 171115067 + 88711798 88712093 AluSc5 308 + 11 305 111817 35 1 0 259 chain 37669 chr6 171115067 + 88725300 88726268 L1PREC2 3366 - 148 977 72588 22 232 145 4 1 0 37 6 4 27 40 16 11 11 8 22 3 1 15 3 0 6 2 0 12 108 95 41 2 0 363 chain 6183 chr6 171115067 + 88749601 88749727 L1MD1 2063 + 1477 1603 183711 27 0 3 5 6 3 11 1 0 14 1 0 4 13 15 44 chain 3962 chr6 171115067 + 88766224 88766267 MER5A1 166 + 34 77 207960 43 chain 2962 chr6 171115067 + 88766764 88766798 MER103C 291 + 65 99 225858 34 chain 5884 chr6 171115067 + 88769373 88769515 MER5A 189 - 42 189 186339 15 15 16 24 21 17 23 7 15 37 chain 29537 chr6 171115067 + 88783914 88784225 AluYb8 318 + 0 311 86490 311 chain 20255 chr6 171115067 + 88787632 88787871 AluY 311 + 31 267 126360 100 3 0 136 chain 21832 chr6 171115067 + 88792079 88792438 THE1B 368 + 2 368 120885 109 0 3 5 2 0 50 47 45 14 7 15 63 0 1 4 2 1 56 chain 42457 chr6 171115067 + 88804763 88805430 LTR66 600 - 0 600 66065 46 0 2 78 31 0 2 0 17 42 4 0 96 2 5 5 0 2 79 1 0 4 0 1 137 58 2 82 chain 41005 chr6 171115067 + 88834782 88835314 LTR10A 586 - 22 586 67893 317 15 45 21 0 1 105 0 1 74 chain 6736 chr6 171115067 + 88836711 88836783 L1PA4 6152 - 170 242 179425 72 chain 7041 chr6 171115067 + 88836783 88836861 L1PA4 6152 + 6058 6136 177174 78 chain 29886 chr6 171115067 + 88848545 88848863 AluYb8 318 + 0 318 85142 318 chain 6037 chr6 171115067 + 88882027 88882262 MLT1A0 366 + 28 305 184919 5 1 0 14 38 38 26 5 7 30 82 123 34 chain 3671 chr6 171115067 + 88948867 88948972 Tigger5 388 + 338 388 212382 18 55 0 32 chain 147606 chr6 171115067 + 88950656 88952480 L1PA7 6471 - 15 2283 24937 169 13 7 193 1 454 12 1 0 100 0 1 563 3 2 416 0 2 164 10 5 10 0 1 169 chain 521057 chr6 171115067 + 88963340 88969492 L1PA6 6164 + 0 6162 5048 194 7 8 74 0 1 8 0 2 222 6 5 671 0 1 403 0 3 682 0 2 29 0 1 125 0 5 644 0 1 137 1 6 81 0 1 388 0 1 396 0 1 1223 7 0 701 9 2 144 chain 36474 chr6 171115067 + 88976796 88977213 L1PA5 6144 - 0 417 74269 417 chain 6224 chr6 171115067 + 88993689 88993959 L1MC4a 1092 - 544 784 183376 18 52 54 29 1 0 4 4 0 14 33 14 39 56 48 20 chain 40639 chr6 171115067 + 89005090 89005598 MER41A 554 - 20 554 68386 61 0 5 42 4 25 401 chain 40179 chr6 171115067 + 89027110 89027646 MLT2A2 560 + 5 560 69065 293 0 6 95 3 14 72 3 4 15 4 5 51 chain 140928 chr6 171115067 + 89028654 89030199 L1PA3long 6157 + 4605 6153 25999 705 0 4 823 1 0 16 chain 328480 chr6 171115067 + 89045428 89049062 L1PA3long 6157 + 2525 6157 12257 199 1 0 453 1 0 2980 chain 547127 chr6 171115067 + 89060540 89068261 L1PA3long 6157 + 5 6157 1815 1435 1 0 396 1560 0 371 0 2 109 1 2 379 5 0 380 0 2 102 0 1 1922 1 0 789 10 1 237 0 1 23 chain 78909 chr6 171115067 + 89062548 89063426 L1PA3long 6157 - 0 880 44102 75 0 2 803 chain 46130 chr6 171115067 + 89063427 89063932 L1PA3long 6157 + 4801 5306 61602 505 chain 76132 chr6 171115067 + 89091306 89092274 LTR5_Hs 974 + 0 974 45402 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 51513 chr6 171115067 + 89099541 89100137 L1PA5 6144 + 5517 6137 57958 241 0 23 190 1 2 164 chain 512601 chr6 171115067 + 89100499 89106590 L1PA6 6164 + 55 6162 5911 105 34 35 42 3 5 276 0 2 47 1 0 356 0 4 367 0 2 63 0 9 601 2 3 239 0 1 121 1 2 131 2 0 116 0 4 553 0 1 45 9 5 334 2 0 96 0 2 27 0 1 53 1 0 483 3 1 116 0 1 1005 2 0 848 2 0 5 chain 536813 chr6 171115067 + 89116217 89122246 L1PA3long 6157 + 2 6157 3337 150 0 1 169 3 0 252 1 2 200 0 128 178 1 2 1087 11 2 1042 1 0 472 0 1 953 3 10 1506 chain 25954 chr6 171115067 + 89123911 89124236 LTR17 781 - 455 781 100189 17 10 0 28 0 2 151 0 9 119 chain 368754 chr6 171115067 + 89124549 89128870 HERV17-int 4347 - 0 4333 11128 26 9 17 1526 0 9 212 0 9 1077 2 3 114 0 1 148 10 0 59 0 3 105 0 2 261 2 0 100 0 1 365 15 10 160 8 7 19 2 0 35 1 0 52 1 0 12 chain 4966 chr6 171115067 + 89128871 89128923 HERV17-int 4347 - 4156 4208 195527 52 chain 9702 chr6 171115067 + 89128924 89129055 HERV17-int 4347 - 4208 4335 162080 27 2 0 34 1 0 51 2 1 14 chain 45190 chr6 171115067 + 89130693 89131226 LTR17 781 - 0 526 62836 455 0 1 16 10 0 28 0 2 24 chain 86122 chr6 171115067 + 89143024 89143974 L1PA3long 6157 + 2259 3209 41111 159 0 1 758 1 0 32 chain 268076 chr6 171115067 + 89143976 89146924 L1PA3long 6157 + 3209 6157 15287 2948 chain 6264 chr6 171115067 + 89147509 89147914 MLT1C 463 + 65 460 183058 30 246 235 57 51 52 21 chain 3557 chr6 171115067 + 89152617 89152659 MLT1F 544 - 320 363 214388 21 0 1 21 chain 103849 chr6 171115067 + 89158115 89159245 L1PA2 6032 - 0 1130 35759 1130 chain 35913 chr6 171115067 + 89163126 89163761 L1PB3 3668 + 2998 3616 74996 77 8 6 29 0 3 56 3 0 8 1 0 114 1 0 83 8 18 86 42 6 16 16 38 28 24 19 9 2 0 8 1 0 10 1 0 4 chain 21888 chr6 171115067 + 89171857 89172143 L1PA16 3655 + 3254 3537 120673 36 3 1 118 1 0 128 chain 35209 chr6 171115067 + 89180766 89181188 L1PA6 6164 + 5678 6100 75909 312 0 1 28 1 0 81 chain 5052 chr6 171115067 + 89181188 89181247 L1PA6 6164 + 6101 6160 194612 59 chain 71820 chr6 171115067 + 89218030 89218823 L1PA4 6152 - 0 793 47556 793 chain 550041 chr6 171115067 + 89230929 89237068 L1PA3long 6157 - 0 6157 1441 849 0 4 2011 0 1 85 1 0 2015 0 3 82 2 13 1094 chain 62144 chr6 171115067 + 89312744 89313508 MER4E 760 + 0 760 51834 166 8 0 141 0 4 71 0 4 60 1 0 85 4 0 139 0 1 89 chain 40574 chr6 171115067 + 89317755 89318188 L1PA2 6032 - 12 445 68473 433 chain 3376 chr6 171115067 + 89330576 89330699 MER119 576 + 191 313 217559 17 72 71 34 chain 319762 chr6 171115067 + 89353105 89356745 L1PA5 6144 + 2514 6138 12608 648 0 2 6 1 0 1070 1 0 151 0 1 587 1 2 220 1 9 167 9 12 666 31 2 81 chain 8836 chr6 171115067 + 89358090 89358189 L1PA4 6152 + 6039 6138 166459 99 chain 42206 chr6 171115067 + 89368267 89368813 MLT2A2 560 + 0 560 66394 180 1 0 103 1 0 119 0 11 50 0 2 25 0 1 62 0 2 5 chain 16661 chr6 171115067 + 89382062 89382415 L1PB1 5432 + 5105 5423 136505 12 4 1 20 1 0 4 3 2 12 2 0 3 2 0 10 2 0 50 1 0 18 1 0 42 2 1 16 3 0 7 14 5 18 23 18 11 1 0 15 1 0 23 1 0 11 1 0 19 chain 12783 chr6 171115067 + 89388660 89388819 Tigger2 2703 + 2272 2434 149126 93 0 3 66 chain 6862 chr6 171115067 + 89423970 89424085 U17 202 - 7 124 178478 58 24 26 33 chain 28793 chr6 171115067 + 89424161 89424460 AluYa5 310 - 11 310 89932 299 chain 193982 chr6 171115067 + 89424525 89426692 L1PA4 6152 + 3979 6152 19676 145 0 1 2016 0 5 6 chain 19384 chr6 171115067 + 89432983 89433272 MER83B 357 + 0 323 128995 46 4 21 63 20 38 82 1 0 73 chain 36073 chr6 171115067 + 89434402 89434840 LTR10F 562 + 8 562 74796 108 0 115 161 0 1 169 chain 198100 chr6 171115067 + 89436799 89439572 HERVIP10FH-int 2884 + 149 2824 19349 45 1 5 9 3 0 191 3 0 515 2 1 289 6 0 176 4 1 7 3 0 9 1 0 8 2 1 61 7 1 126 3 0 5 0 1 6 12 9 12 26 12 14 7 1 12 20 3 43 22 10 34 39 27 59 0 2 206 1 0 46 1 2 135 0 4 12 5 4 17 5 4 18 13 15 62 14 6 238 0 1 25 1 0 23 1 0 29 0 3 10 2 1 50 1 0 17 1 0 13 10 4 35 chain 34951 chr6 171115067 + 89439854 89440292 LTR10F 562 + 0 553 76263 106 1 113 9 0 3 322 chain 24782 chr6 171115067 + 89450291 89450586 L1PA8A 6298 + 5991 6283 105982 218 3 0 74 chain 42071 chr6 171115067 + 89464282 89464790 MER9a3 513 + 0 513 66531 18 0 2 91 0 1 313 1 0 8 0 1 20 0 2 57 chain 9125 chr6 171115067 + 89468599 89468704 L1PA5 6144 - 0 105 164944 105 chain 92474 chr6 171115067 + 89482184 89483198 L1PA3long 6157 + 5139 6156 38823 168 3 6 843 chain 19209 chr6 171115067 + 89505143 89505403 L1PA7 6471 + 6199 6459 129508 66 1 3 16 0 1 18 7 5 144 1 0 7 chain 8995 chr6 171115067 + 89509918 89510070 Tigger4a 237 - 22 178 165634 21 11 12 31 4 0 26 3 10 56 chain 9709 chr6 171115067 + 89533927 89534155 Tigger3a 397 - 87 361 162044 20 15 16 10 8 6 40 7 0 51 39 93 38 chain 524983 chr6 171115067 + 89536813 89543297 L1PA7 6471 + 1 6459 4688 65 0 1 632 25 26 45 0 2 127 6 3 24 0 1 174 0 1 165 0 1 268 7 10 55 0 3 271 0 1 260 0 11 54 0 1 117 0 1 7 11 10 224 12 6 36 0 7 31 15 1 224 1 0 72 5 4 154 0 4 62 1 0 49 39 2 269 12 4 17 2 0 109 1 0 407 1 0 425 0 1 610 1 0 228 0 7 244 0 1 67 0 4 8 0 4 375 0 1 236 5 6 60 12 13 92 11 4 54 chain 21320 chr6 171115067 + 89543470 89543767 AluSg 306 + 10 304 122798 141 22 23 114 4 0 16 chain 4026 chr6 171115067 + 89631565 89631621 MER2 342 + 157 211 206975 37 2 0 17 chain 166794 chr6 171115067 + 89656400 89658848 SVA_F 1814 + 9 1812 22420 938 527 15 39 2 0 4 1 0 133 130 0 674 chain 7319 chr6 171115067 + 89657339 89657429 SVA_F 1814 + 1187 1276 175310 40 2 1 48 chain 31113 chr6 171115067 + 89657451 89657778 SVA_F 1814 + 609 936 82321 327 chain 4672 chr6 171115067 + 89657778 89657860 SVA_F 1814 + 1001 1084 151674 23 0 1 59 chain 11478 chr6 171115067 + 89658045 89658174 SVA_F 1814 + 963 1089 154386 38 2 0 4 1 0 84 chain 251311 chr6 171115067 + 89663629 89668712 L1PB2 3958 + 32 3838 16153 21 25 13 18 34 24 31 2 0 24 22 15 37 1 3 9 10 2 268 1 0 31 0 4 51 2 0 117 0 1 35 0 95 93 339 0 189 794 167 65 9 13 82 0 1 155 49 0 39 0 4 52 0 2 72 1 2 164 308 0 131 21 0 110 1 2 304 2 0 10 9 0 244 1 3 27 12 13 149 1 0 108 0 7 22 1 2 19 3 0 8 1 3 45 1 0 24 7 9 136 2 0 56 1 0 11 5 0 40 0 7 16 19 14 20 0 4 69 1 0 74 1 0 48 0 3 10 1 0 74 2 0 21 2 1 63 chain 29228 chr6 171115067 + 89670647 89671029 MLT2A1 477 + 0 385 87923 66 1 6 10 0 1 86 4 1 215 chain 257202 chr6 171115067 + 89677021 89682117 MER61-int 3695 + 53 3688 15866 6 0 5 129 58 19 59 2 1 54 4 0 6 12 9 51 0 1 18 15 1 71 4 5 54 41 45 37 0 2 15 0 20 115 1 4 73 2 0 16 1 0 147 325 0 77 0 56 179 0 7 9 1 0 53 0 4 69 1 6 80 1164 0 14 0 2 154 0 1 67 6 1 273 0 8 46 8 10 348 1 0 128 11 8 152 0 5 63 0 1 25 6 5 36 1 0 166 2 1 5 0 1 74 3 2 104 0 1 59 29 0 34 2 3 248 15 14 39 0 6 28 chain 90813 chr6 171115067 + 89678812 89679970 MER11A 1151 - 0 1151 39350 66 1 0 219 12 10 50 2 1 123 6 9 97 2 0 169 0 1 80 0 2 22 2 1 5 0 2 116 8 0 178 chain 9889 chr6 171115067 + 89685515 89685733 MER65A 464 + 0 205 161132 39 36 22 16 37 36 29 0 2 61 chain 95846 chr6 171115067 + 89689216 89690545 L1PB3 3668 - 637 1968 37862 29 12 0 14 2 0 120 13 12 19 0 4 19 0 1 54 1 0 53 6 1 20 1 2 16 1 0 119 0 4 52 0 1 327 0 3 41 12 7 123 16 18 30 1 13 223 0 1 5 chain 28491 chr6 171115067 + 89699482 89699881 MER65A 464 - 0 400 91223 140 2 0 5 3 0 13 0 1 65 7 8 34 0 2 7 2 0 64 0 4 57 chain 7668 chr6 171115067 + 89702152 89702274 MER2 342 + 136 258 173114 17 0 11 6 11 0 88 chain 14738 chr6 171115067 + 89715998 89716203 LTR49-int 1717 + 1273 1479 142148 15 0 1 118 8 9 17 1 0 46 chain 11828 chr6 171115067 + 89717973 89718126 MER50 708 + 556 708 152911 68 2 1 83 chain 8133 chr6 171115067 + 89725133 89725452 L1PREC2 3366 - 339 622 170315 16 4 5 35 36 19 30 118 102 14 1 0 23 5 4 27 2 0 8 chain 24059 chr6 171115067 + 89725452 89725943 L1PA15 4387 + 3885 4366 109991 5 2 0 43 1 0 107 0 1 63 1 0 17 71 65 21 4 0 8 7 21 29 10 7 42 22 15 27 1 0 10 chain 55515 chr6 171115067 + 89726222 89727087 L1MA2 4263 + 3227 4079 55405 64 2 10 53 6 5 13 1 0 100 1 0 112 6 2 76 1 0 4 14 1 125 18 15 65 5 16 68 11 9 15 0 1 75 14 7 16 chain 4359 chr6 171115067 + 89740260 89740402 L1MB7 1623 + 1365 1464 202454 5 1 0 50 67 26 6 1 0 12 chain 29744 chr6 171115067 + 89747454 89747833 THE1C-int 1605 - 1170 1605 85684 253 1 55 110 1 3 14 chain 21228 chr6 171115067 + 89751766 89752006 L1PA5 6144 + 5892 6132 123115 240 chain 22006 chr6 171115067 + 89753549 89753830 AluSp 311 + 10 305 120201 36 5 11 138 0 8 102 chain 11743 chr6 171115067 + 89773235 89773395 U2 167 - 3 157 153284 22 2 0 5 2 0 7 2 0 120 chain 7722 chr6 171115067 + 89774225 89774557 L1PA5 6144 - 0 332 61107 332 chain 110173 chr6 171115067 + 89774561 89776015 LTR12C 1709 + 0 1701 34164 282 95 206 191 0 159 274 1 0 5 3 1 9 0 4 16 1 0 77 0 4 389 27 0 84 chain 5303 chr6 171115067 + 89776023 89776251 L1PA5 6144 - 332 560 61107 228 chain 23819 chr6 171115067 + 89809257 89809539 AluSp 311 - 15 297 111368 282 chain 25651 chr6 171115067 + 89834919 89835208 AluY 311 + 2 292 101489 130 0 1 159 chain 79381 chr6 171115067 + 89837508 89838564 MER11A 1151 + 0 1144 43872 23 2 1 31 0 99 62 0 1 10 0 4 59 8 4 32 0 2 115 0 1 94 0 1 296 25 1 11 8 15 58 1 2 45 2 0 16 0 1 82 0 2 76 chain 8155 chr6 171115067 + 89893289 89893477 L1PB3 3668 + 3403 3566 170196 51 64 41 32 4 2 37 chain 43918 chr6 171115067 + 89898923 89899393 L1PA2 6032 + 5562 6032 64314 470 chain 61445 chr6 171115067 + 89932783 89934979 L1PB1 5432 - 5 1240 10280 5 2 0 18 1 0 13 1 0 16 9 8 21 89 71 39 1 0 15 2 1 50 4 2 9 5 1 12 1 0 8 1 0 24 3 0 8 6 7 168 1 0 84 1 0 4 0 1 26 0 4 14 1 4 32 635 0 55 0 2 73 0 3 154 0 4 99 306 0 180 chain 559244 chr6 171115067 + 89934982 89941006 L1PA2 6032 - 0 6030 403 1018 0 1 1119 0 2 1436 1 4 2450 chain 164160 chr6 171115067 + 89941034 89946901 L1PB1 5432 - 1240 5420 10280 4 0 1 155 0 2 292 24 17 130 9 10 78 0 1 116 0 1 20 1 0 158 0 1 63 0 8 127 0 1 174 1 0 6 2 1 331 1 0 104 0 2 432 1 0 49 1 2 16 1400 0 327 298 1 88 0 2 66 18 12 6 0 3 329 3 0 157 0 3 113 1 0 174 2 1 90 0 1 12 10 21 78 6 0 208 0 1 175 1 0 10 chain 113178 chr6 171115067 + 89943340 89944728 LTR12C 1709 - 8 1709 33323 76 1 0 64 1 0 89 0 4 237 14 7 102 7 5 5 1 0 98 0 278 355 0 43 338 chain 4028 chr6 171115067 + 89965813 89965866 MER3 215 + 160 215 206956 17 0 2 36 chain 18354 chr6 171115067 + 89986770 89987115 THE1D 372 + 18 352 131926 35 48 38 10 2 1 64 33 34 25 1 0 127 chain 3889 chr6 171115067 + 90003807 90003849 MER5B 177 - 64 106 209041 42 chain 122972 chr6 171115067 + 90004363 90005740 L1PA5 6144 - 2 1398 30059 790 0 3 47 1 8 9 0 4 470 0 5 60 chain 83401 chr6 171115067 + 90009880 90011447 L1PREC2 3366 + 1318 2576 42158 56 300 0 126 16 11 47 10 4 36 15 0 50 0 3 111 7 0 6 1 0 4 0 4 36 1 0 25 24 0 8 5 29 13 8 8 55 0 4 65 7 10 27 25 35 137 0 6 8 4 0 158 0 1 148 6 5 22 chain 20763 chr6 171115067 + 90029274 90029576 L1PB4 2604 + 1901 2206 124741 32 0 4 25 21 20 224 chain 9206 chr6 171115067 + 90032102 90032242 L1PB 1623 + 1311 1453 164523 87 13 16 32 1 0 7 chain 28658 chr6 171115067 + 90050493 90050793 AluYb8 318 - 18 318 90496 300 chain 23994 chr6 171115067 + 90084175 90084462 AluSp 311 + 4 295 110360 48 1 5 238 chain 23354 chr6 171115067 + 90112878 90113179 AluY 311 + 0 300 113906 77 4 0 55 0 1 42 11 11 90 0 2 22 chain 13423 chr6 171115067 + 90125905 90126095 MER30 238 + 36 238 146610 64 2 0 5 4 22 63 4 0 48 chain 24008 chr6 171115067 + 90134166 90134542 THE1B 368 - 0 368 110285 55 1 0 20 7 6 94 31 24 52 7 9 60 0 1 34 2 0 13 chain 6372 chr6 171115067 + 90151253 90151709 MER4D 903 - 8 135 182232 14 1 0 48 345 16 23 3 4 22 chain 25769 chr6 171115067 + 90158774 90159140 Tigger1 2417 + 1470 1840 101014 156 13 14 14 5 7 21 1 2 156 chain 43730 chr6 171115067 + 90168019 90168556 MLT2A2 560 - 14 560 64532 67 1 9 9 1 0 255 0 1 95 0 1 109 chain 13938 chr6 171115067 + 90178220 90178417 MER30B 195 - 3 190 144797 112 15 5 70 chain 11024 chr6 171115067 + 90189350 90189496 L1PA4 6152 - 8 154 156114 27 9 0 7 0 9 103 chain 27623 chr6 171115067 + 90201197 90201505 L1PA5 6144 + 5824 6132 94288 308 chain 8374 chr6 171115067 + 90224144 90224247 MER30 238 + 138 238 169004 58 3 0 42 chain 9620 chr6 171115067 + 90225788 90226096 MLT2B1 522 + 0 287 162492 106 88 85 21 78 60 15 chain 59630 chr6 171115067 + 90250162 90251106 L1MA1 4479 - 289 1196 53035 14 1 0 4 17 8 13 1 0 9 1 0 34 5 3 27 4 3 62 0 1 15 0 3 5 11 6 31 3 0 6 1 0 45 10 11 29 1 0 16 2 0 6 0 1 12 1 0 52 23 22 13 2 0 24 1 0 195 2 0 100 1 0 31 3 0 78 5 0 28 chain 3402 chr6 171115067 + 90284394 90284430 MIR 256 - 111 147 217026 36 chain 4429 chr6 171115067 + 90291817 90291881 LTR37A 408 - 49 114 201599 21 1 2 42 chain 3368 chr6 171115067 + 90320704 90320751 MER5B 177 - 130 175 217701 5 1 0 28 1 0 12 chain 4574 chr6 171115067 + 90332162 90332221 MER5A 189 + 99 161 199952 11 0 3 48 chain 24528 chr6 171115067 + 90338210 90338519 AluY 311 + 4 299 107384 271 1 0 13 13 0 11 chain 19773 chr6 171115067 + 90404690 90404927 AluSg7 307 + 20 257 127897 44 2 0 10 0 1 56 0 1 125 chain 7111 chr6 171115067 + 90421118 90421199 MER2 342 + 146 227 176672 81 chain 31367 chr6 171115067 + 90441048 90441455 L1PA8 5853 + 5411 5814 81878 110 6 9 32 1 0 48 2 0 65 5 4 9 1 0 55 1 0 17 1 0 54 chain 11306 chr6 171115067 + 90454696 90454836 L1PA6 6164 - 2 158 155045 8 0 16 132 chain 23951 chr6 171115067 + 90477901 90478241 THE1B 368 + 0 348 110617 52 0 3 25 1 2 87 1 0 11 0 1 16 0 5 22 7 6 76 1 0 4 0 1 37 chain 76340 chr6 171115067 + 90492527 90493573 MER11A 1151 + 0 1151 45295 59 0 99 72 0 4 58 8 4 147 0 1 28 2 0 66 0 1 28 2 1 148 0 23 96 7 0 3 18 0 12 0 23 11 18 0 36 0 1 44 0 2 16 3 4 164 chain 26845 chr6 171115067 + 90514468 90514778 AluYf4 310 + 0 305 96820 93 3 0 39 2 0 173 chain 4365 chr6 171115067 + 90533012 90533088 U13_ 108 + 0 78 202388 38 14 16 24 chain 24604 chr6 171115067 + 90534160 90534454 AluY 311 + 10 307 106970 122 0 1 142 0 2 30 chain 24491 chr6 171115067 + 90568363 90568657 AluSc 308 - 15 308 107586 245 2 1 47 chain 22320 chr6 171115067 + 90585904 90586197 AluSx1 309 + 10 294 118825 181 1 0 96 8 0 7 chain 83375 chr6 171115067 + 90600539 90601484 LTR5_Hs 974 + 0 974 42168 19 0 2 516 0 1 10 0 7 204 1 20 195 chain 7804 chr6 171115067 + 90608007 90608096 HY1 111 - 7 96 172285 89 chain 15421 chr6 171115067 + 90664024 90664199 L1PA3long 6157 - 0 179 140128 51 0 4 124 chain 19325 chr6 171115067 + 90681295 90681655 THE1B 368 - 12 368 129168 44 7 6 47 1 3 12 3 2 12 4 3 13 33 28 12 0 2 55 5 6 16 6 5 90 chain 3547 chr6 171115067 + 90693429 90693491 MER3 215 - 131 196 214585 28 10 13 24 chain 263150 chr6 171115067 + 90740136 90743069 L1PA4 6152 + 3201 6134 15532 739 0 1 718 1 0 1475 chain 544902 chr6 171115067 + 90763700 90769855 L1PA4 6152 + 1 6152 2086 447 20 14 118 1 0 1105 1 0 130 0 2 31 0 1 1675 1 0 366 0 2 2260 chain 53754 chr6 171115067 + 90838316 90838939 L1PA4 6152 + 5526 6143 56505 474 15 9 134 chain 11801 chr6 171115067 + 90839074 90839219 L1PA8A 6298 - 11 163 153041 103 0 7 42 chain 65502 chr6 171115067 + 90843270 90843995 L1PA4 6152 - 9 736 50338 450 0 2 275 chain 31680 chr6 171115067 + 90873661 90874015 L1PA4 6152 + 3015 3370 81354 158 0 1 196 chain 244963 chr6 171115067 + 90874015 90876780 L1PA4 6152 + 3371 6146 16511 985 0 4 92 0 3 556 1 0 216 5 6 65 0 4 550 1 0 294 chain 4983 chr6 171115067 + 90890366 90890449 L1PB3 3668 - 106 186 195321 33 3 1 13 0 1 11 1 0 3 1 0 18 chain 29767 chr6 171115067 + 90899045 90899358 AluYb8 318 + 0 313 85585 313 chain 97405 chr6 171115067 + 90917780 90918932 L1PA7 6471 + 5315 6470 37453 217 0 1 89 0 2 729 9 6 5 0 3 103 chain 3310 chr6 171115067 + 90935743 90935785 MER5A 189 + 147 189 218769 42 chain 20430 chr6 171115067 + 90979700 90980046 L1PB1 5432 - 215 555 125817 49 2 0 7 7 3 14 3 2 4 1 0 24 7 0 5 1 6 20 4 0 6 12 16 96 1 5 83 chain 8562 chr6 171115067 + 90999260 90999478 MER30 238 - 5 238 167947 41 3 0 30 1 0 24 59 67 21 17 28 22 chain 6815 chr6 171115067 + 91002730 91002900 MER45A 178 - 10 171 178841 70 72 63 28 chain 9544 chr6 171115067 + 91016056 91016250 L1MB2 1706 - 604 781 162864 12 19 14 9 10 0 10 1 0 80 13 12 40 chain 14792 chr6 171115067 + 91017870 91018066 L1PA8 5853 + 5662 5853 141957 17 1 0 10 1 0 50 4 2 19 1 0 93 chain 16242 chr6 171115067 + 91026899 91027086 L1PA7 6471 - 7 195 137646 40 0 1 147 chain 62917 chr6 171115067 + 91034013 91035100 Tigger1 2417 - 1336 2388 51483 149 5 8 46 93 0 266 0 1 26 20 0 25 0 1 47 3 57 14 9 27 49 105 111 210 5 0 15 chain 11743 chr6 171115067 + 91038451 91038594 MER115 684 - 29 171 153290 33 1 0 109 chain 119776 chr6 171115067 + 91042955 91044533 THE1C-int 1605 - 0 1605 31128 431 5 6 12 14 15 276 0 1 5 24 23 290 4 6 88 0 7 21 0 2 92 1 16 299 2 1 14 chain 3539 chr6 171115067 + 91050373 91050417 MLT2B2 565 + 521 565 214734 44 chain 6631 chr6 171115067 + 91059653 91059761 MER5A 189 - 77 188 180233 46 18 21 44 chain 15233 chr6 171115067 + 91192098 91192484 THE1C 375 + 0 375 140683 15 2 0 41 77 74 33 94 88 124 chain 23750 chr6 171115067 + 91195666 91196012 THE1B 368 + 7 348 111775 162 1 0 31 2 0 83 31 29 36 chain 4632 chr6 171115067 + 91197853 91197905 LTR54 533 + 318 370 199276 52 chain 528132 chr6 171115067 + 91271827 91277941 L1PA5 6144 + 0 6142 4387 121 0 14 778 0 1 99 1 0 74 7 15 67 9 0 277 0 4 112 0 2 749 1 0 494 0 1 54 2 13 295 4 0 1025 0 2 1398 1 2 411 1 0 134 chain 20204 chr6 171115067 + 91285886 91286138 AluY 311 + 26 279 126518 106 6 7 140 chain 29625 chr6 171115067 + 91295809 91296122 AluYb8 318 + 0 313 86134 313 chain 524703 chr6 171115067 + 91332536 91339435 L1PA7 6471 + 1 6466 4710 194 2 3 205 0 3 180 0 4 96 5 6 187 0 1 33 1 4 5 3 0 136 0 1 674 0 1 88 1 3 251 0 1 184 1 0 66 1 0 193 0 2 110 0 2 799 0 5 46 8 8 4 0 1 25 2 1 515 9 10 4 1 0 259 0 3 295 0 1 23 0 1 313 481 0 99 0 1 486 12 20 68 1 0 182 0 1 221 4 0 3 5 0 202 3 23 213 chain 33531 chr6 171115067 + 91337469 91337835 L1PA3long 6157 + 5790 6156 78350 366 chain 5080 chr6 171115067 + 91358652 91358737 LTR33C 613 - 499 607 194296 53 13 36 19 chain 12322 chr6 171115067 + 91368812 91369003 L1PA17 2846 + 2499 2693 150931 20 0 4 12 1 0 10 0 4 48 5 3 32 1 0 18 3 2 41 chain 4238 chr6 171115067 + 91375831 91375886 MER103C 291 - 105 159 204053 19 1 0 35 chain 40013 chr6 171115067 + 91379923 91380370 LTR7 482 - 0 482 69305 63 0 4 131 0 31 253 chain 256111 chr6 171115067 + 91381628 91384698 HERVH-int 3825 - 0 3343 15929 225 3 8 254 8 218 338 0 3 1063 8 35 239 0 1 218 15 0 194 0 3 247 2 1 48 8 7 23 3 2 26 3 41 13 3 14 24 1 0 10 1 0 38 5 0 50 chain 40012 chr6 171115067 + 91384710 91385161 LTR7 482 - 0 482 69306 197 1 32 253 chain 526201 chr6 171115067 + 91443463 91449923 L1PA7 6471 - 1 6471 4569 9 2 0 266 0 1 400 0 1 98 0 1 77 0 3 1275 0 1 95 0 1 71 9 0 159 0 3 326 21 0 16 6 10 33 0 1 50 0 3 22 0 4 72 1 16 599 0 1 224 1 0 147 1 0 158 0 1 35 13 6 56 0 1 186 0 1 139 2 1 198 6 0 134 4 5 574 8 0 6 1 6 56 4 7 276 0 18 8 5 6 81 0 1 119 9 0 154 1 5 247 chain 3339 chr6 171115067 + 91498543 91498582 MADE1 96 - 57 96 218239 39 chain 7848 chr6 171115067 + 91516331 91516433 L1PA8 5853 - 0 112 172012 39 0 11 43 1 0 19 chain 130189 chr6 171115067 + 91523515 91525328 L1PA11 4918 - 289 2071 28050 18 59 44 13 1 0 15 42 28 23 1 0 14 2 0 66 7 5 9 2 1 58 9 4 406 1 0 119 11 8 373 0 9 80 1 0 220 1 6 198 0 1 64 chain 25034 chr6 171115067 + 91558041 91558329 AluSc 308 + 8 296 104620 288 chain 6317 chr6 171115067 + 91577532 91577803 MLT1C 463 + 148 463 182662 11 0 1 38 26 0 10 140 209 46 chain 88489 chr6 171115067 + 91589243 91590878 L1PB1 5432 - 19 1313 40189 9 1 0 13 1 0 21 1 0 23 22 20 18 27 15 13 1 0 44 8 7 9 2 1 53 2 0 9 18 13 7 1 0 24 0 1 8 5 2 287 5 4 55 312 0 95 0 1 31 4 0 242 4 3 7 0 1 184 0 1 24 7 11 38 chain 22555 chr6 171115067 + 91602090 91602454 THE1C 375 + 0 362 117787 30 1 0 17 36 33 105 28 30 147 chain 5232 chr6 171115067 + 91654924 91655003 MADE1 96 + 0 96 192706 38 4 21 37 chain 8225 chr6 171115067 + 91687786 91687891 MLT1C 463 + 351 456 169807 105 chain 17705 chr6 171115067 + 91751908 91752103 L1PA3long 6157 + 5960 6155 133691 195 chain 549293 chr6 171115067 + 91756869 91762879 L1PA2 6032 - 4 6024 1539 330 0 3 1332 0 2 557 1 0 1605 2 1 1484 0 7 699 chain 39489 chr6 171115067 + 91781605 91782176 THE1C-int 1605 + 1046 1600 70033 103 22 22 42 5 0 3 14 0 20 2 5 13 6 5 341 chain 411492 chr6 171115067 + 91895994 91901059 L1PA7 6471 - 29 5113 9760 68 48 71 690 0 3 456 0 1 578 0 2 569 1 4 497 4 0 861 10 1 59 2 0 5 0 2 245 3 4 65 1 0 903 chain 29972 chr6 171115067 + 91904077 91904465 L1PA7 6471 - 1 404 84898 130 27 41 167 0 1 64 chain 17985 chr6 171115067 + 91915278 91915626 L1PB1 5432 - 10 324 132905 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 24 12 14 2 1 44 1 0 18 1 0 51 2 0 9 22 17 8 1 0 17 3 0 9 chain 138577 chr6 171115067 + 91916689 91918498 L1PBa 3878 - 176 1974 26352 301 5 6 173 2 0 80 2 3 91 6 9 148 9 0 130 2 1 10 12 13 27 0 3 58 6 0 189 2 0 556 chain 202285 chr6 171115067 + 91918498 91920706 L1PA2 6032 - 2 2208 19041 985 4 1 531 0 1 688 chain 59787 chr6 171115067 + 91920706 91921355 L1PA2 6032 + 3178 3827 52936 649 chain 21617 chr6 171115067 + 91933710 91933970 L1PA7 6471 + 6210 6466 121703 248 4 0 8 chain 6475 chr6 171115067 + 91955804 91955967 MER33 330 - 140 312 181428 23 0 3 8 1 0 14 61 68 56 chain 27933 chr6 171115067 + 91966270 91966643 THE1B 368 + 0 368 93232 19 2 0 151 2 0 117 7 6 75 chain 142144 chr6 171115067 + 92005835 92007625 L1PA8 5853 - 0 1761 25797 93 1 0 19 2 1 42 6 5 14 1 0 71 2 0 46 1 0 294 16 1 185 13 0 73 6 3 62 0 4 363 4 14 193 2 0 219 3 0 59 chain 7900 chr6 171115067 + 92011875 92012005 LTR8 732 - 560 701 171653 23 24 31 53 0 4 30 chain 3004 chr6 171115067 + 92012698 92012732 LTR12D 1347 - 597 631 224965 34 chain 85445 chr6 171115067 + 92043651 92044789 L1PA8 5853 - 0 1126 41367 25 20 17 51 1 0 19 2 1 39 17 16 6 1 0 71 2 0 36 11 10 552 2 0 283 chain 14133 chr6 171115067 + 92046303 92046537 MER30 238 + 0 238 144095 22 16 8 77 4 0 8 5 18 63 3 6 36 chain 90875 chr6 171115067 + 92047996 92049111 L1P1 4361 - 331 1445 39330 770 7 0 106 0 6 135 1 2 89 1 0 6 chain 70618 chr6 171115067 + 92049111 92050057 L1PA7 6471 + 5550 6470 48104 253 0 1 478 3 0 4 26 0 25 1 0 127 16 19 13 chain 14769 chr6 171115067 + 92066186 92066359 L1PA5 6144 + 5967 6140 142033 173 chain 16945 chr6 171115067 + 92072472 92072678 MLT2A2 560 + 94 301 135742 136 0 1 70 chain 95904 chr6 171115067 + 92072688 92073980 HERVL-int 5654 + 4328 5645 37843 40 0 4 510 13 16 168 0 7 71 10 9 29 0 1 245 5 1 53 1 4 92 0 3 8 0 5 9 10 14 28 chain 37294 chr6 171115067 + 92073989 92074489 MLT2A2 560 + 0 505 73088 120 7 6 53 0 1 262 8 13 50 chain 192641 chr6 171115067 + 92077981 92080523 L1PA8A 6298 - 8 2562 19802 33 0 1 13 0 1 56 6 7 30 2 1 234 0 1 158 0 1 28 0 1 144 2 1 36 0 1 53 2 1 141 0 5 170 1 0 111 0 1 324 6 5 248 0 1 66 11 17 37 20 20 171 0 1 33 0 1 138 0 1 19 11 0 41 0 4 52 7 8 138 chain 254890 chr6 171115067 + 92081124 92084387 L1PA7 6471 - 9 3445 15988 320 6 5 516 1 0 145 0 1 247 14 170 22 0 3 282 1 0 79 0 4 103 4 5 219 10 11 86 0 1 195 0 3 141 0 1 136 0 22 329 0 4 175 17 21 4 1 0 4 0 1 56 25 0 125 chain 101792 chr6 171115067 + 92098456 92099979 L1PB1 5432 + 3930 5422 36321 101 4 6 16 3 2 4 0 1 146 1 0 104 1 0 295 1 5 17 2 0 476 1 0 12 4 1 22 1 0 6 1 0 12 18 12 52 2 1 16 4 3 40 1 0 11 31 21 14 25 20 24 1 0 21 1 0 13 2 1 17 chain 208637 chr6 171115067 + 92110652 92112998 L1PA5 6144 - 6 2354 18593 147 3 4 180 0 2 1017 0 1 353 2 0 644 chain 120554 chr6 171115067 + 92130362 92131925 THE1B-int 1605 + 0 1600 30854 37 7 9 37 0 1 218 0 1 129 34 59 13 0 4 916 0 4 172 chain 87065 chr6 171115067 + 92132836 92133796 L1PA4 6152 + 5183 6143 40752 960 chain 26086 chr6 171115067 + 92166701 92167071 THE1C 375 + 0 375 99685 233 0 1 24 6 0 64 4 15 13 8 7 18 chain 3389 chr6 171115067 + 92168751 92168788 THE1C 375 + 17 54 217306 37 chain 231855 chr6 171115067 + 92177272 92180030 L1P2 5180 - 1616 4393 17208 304 0 3 134 1 0 802 9 8 365 1 0 394 0 1 603 0 26 112 16 9 11 1 0 5 chain 7007 chr6 171115067 + 92199094 92199176 L1PA5 6144 - 0 82 177425 82 chain 14172 chr6 171115067 + 92199585 92199782 L1PB4 2604 + 2010 2339 143978 14 0 128 138 5 9 40 chain 3785 chr6 171115067 + 92213608 92213701 L1MA3 4352 + 4258 4322 210587 7 0 1 16 1 0 6 1 0 23 28 0 11 chain 135278 chr6 171115067 + 92237105 92238699 L1PA7 6471 - 17 1604 26957 138 12 12 1319 6 0 113 1 0 5 chain 40631 chr6 171115067 + 92289935 92290487 MLT2A2 560 - 0 560 68396 48 2 0 20 1 2 77 7 18 184 17 15 196 chain 405219 chr6 171115067 + 92299682 92304681 L1PA6 6164 + 0 6162 9937 406 4 0 10 0 1 39 10 9 375 0 1 366 4 0 302 1 2 78 0 3 138 17 1168 291 0 1 113 0 10 382 2 1 181 0 1 484 0 4 524 1 0 160 0 1 104 6 7 158 4 0 376 0 2 315 4 5 144 chain 39376 chr6 171115067 + 92362161 92362595 L1PA4 6152 - 16 450 70206 434 chain 32830 chr6 171115067 + 92413704 92414159 L1PA16 3655 + 2253 2710 79491 72 19 21 265 0 1 63 1 0 35 chain 4257 chr6 171115067 + 92419051 92419147 MLT1A 405 + 296 379 203783 17 8 9 15 1 0 28 13 0 14 chain 301384 chr6 171115067 + 92433711 92438243 L1PA7 6471 - 3 3736 13354 9 2 0 107 0 1 212 3 4 287 7 6 4 0 1 122 0 3 89 7 6 597 0 2 25 5 7 888 0 1 96 3 0 246 0 1 17 816 6 183 0 4 474 0 2 333 chain 5220 chr6 171115067 + 92462828 92462911 FRAM 166 - 8 92 192824 45 10 11 28 chain 13574 chr6 171115067 + 92494843 92495241 LTR12 884 - 175 805 146077 47 159 374 10 3 4 21 3 44 119 25 0 11 chain 15861 chr6 171115067 + 92498759 92498937 L1PA4 6152 - 4 183 138774 144 0 1 34 chain 284495 chr6 171115067 + 92500864 92504074 L1PA4 6152 - 9 3216 14385 132 2 0 6 0 2 1132 8 5 1930 chain 74059 chr6 171115067 + 92534451 92535428 L1PA8 5853 + 4865 5853 46479 120 0 2 19 1 0 4 7 5 280 3 20 249 1 0 46 2 0 69 1 0 61 2 1 19 1 0 73 0 1 19 chain 46359 chr6 171115067 + 92563403 92564042 THE1C-int 1605 + 0 684 61723 12 4 3 81 0 57 176 17 0 91 2 1 24 0 7 217 2 1 8 0 1 5 chain 8187 chr6 171115067 + 92576020 92576113 AluY 311 + 143 239 170029 7 0 3 86 chain 97112 chr6 171115067 + 92580146 92581208 L1PA2 6032 - 1054 2112 37540 955 5 1 102 chain 95542 chr6 171115067 + 92581208 92582249 L1PA2 6032 + 4988 6029 37889 1041 chain 69549 chr6 171115067 + 92590917 92591952 LTR12E 1234 - 0 1234 48588 84 32 56 234 9 20 84 50 0 389 1 2 10 0 30 7 0 192 51 55 46 29 chain 80330 chr6 171115067 + 92597848 92598785 L1PA4 6152 - 664 1600 43459 187 1 0 672 1 0 11 0 1 65 chain 56615 chr6 171115067 + 92598785 92599434 L1PA4 6152 + 5490 6141 54767 327 1 2 78 0 1 243 chain 22205 chr6 171115067 + 92620337 92620606 AluSc 308 + 15 284 119327 269 chain 87367 chr6 171115067 + 92648021 92649015 L1PA5 6144 - 15 1008 40628 74 3 0 71 0 1 628 0 1 218 chain 52663 chr6 171115067 + 92649015 92649608 L1PA5 6144 + 4502 5093 57065 156 1 0 393 1 0 42 chain 176934 chr6 171115067 + 92666595 92668760 L1PA7 6471 - 13 2178 21257 283 13 14 11 10 13 515 2 0 9 1 0 310 0 1 541 2 0 468 chain 41434 chr6 171115067 + 92668767 92669298 L1PA7 6471 + 3757 4285 67374 61 14 12 172 1 0 283 chain 36767 chr6 171115067 + 92680779 92681241 THE1B-int 1605 - 0 454 73851 120 7 0 166 2 1 167 chain 127906 chr6 171115067 + 92681430 92682886 L1PA4 6152 - 14 1461 28532 246 1 0 586 8 0 615 chain 143253 chr6 171115067 + 92682886 92684508 L1PA4 6152 + 3078 4702 25606 79 1 0 696 0 1 589 2 0 192 2 6 61 chain 83282 chr6 171115067 + 92701564 92702647 MER11B 1079 - 0 1079 42214 4 0 1 194 0 1 113 6 0 94 1 0 354 0 4 55 3 0 259 chain 33389 chr6 171115067 + 92705371 92706144 L1PB1 5432 + 4849 5424 78589 188 11 18 48 171 0 11 1 0 24 1 0 9 27 20 53 2 1 16 1 0 44 1 0 13 72 54 22 1 0 21 2 1 12 1 0 16 1 0 4 chain 5374 chr6 171115067 + 92707659 92707726 MLT1A1 405 + 297 365 191266 14 0 1 53 chain 45532 chr6 171115067 + 92719390 92719884 L1PA2 6032 + 5537 6031 62476 494 chain 9851 chr6 171115067 + 92720895 92721244 LTR12C 1709 - 672 1064 161341 40 209 251 96 0 1 4 chain 898 chr6 171115067 + 92721051 92721084 LTR12C 1709 - 1030 1064 193618 29 0 1 4 chain 1698 chr6 171115067 + 92721285 92721351 LTR12C 1709 - 666 851 190971 24 11 130 31 chain 29999 chr6 171115067 + 92724777 92725095 AluYb8 318 - 0 318 84816 318 chain 19259 chr6 171115067 + 92739613 92739835 L1P2 5180 + 1862 2085 129350 40 0 1 182 chain 79551 chr6 171115067 + 92739837 92740824 L1PA7 6471 + 5495 6465 43804 107 0 4 7 3 1 115 27 6 62 0 1 183 0 1 483 chain 24058 chr6 171115067 + 92742804 92743101 AluSg7 307 - 11 307 109998 164 1 0 132 chain 4243 chr6 171115067 + 92750961 92751246 MLT2D 439 - 0 320 203965 42 221 256 22 chain 506052 chr6 171115067 + 92788008 92794156 L1PA6 6164 + 0 6162 6461 332 20 19 109 1 0 1484 12 10 159 0 3 209 0 1 757 6 5 101 0 1 286 4 0 222 4 0 57 0 10 62 0 2 171 5 8 360 0 4 681 0 1 254 1 0 117 0 2 725 0 1 9 chain 49165 chr6 171115067 + 92806313 92806942 L1PA7 6471 + 5849 6465 59620 107 12 0 216 0 1 39 1 0 5 0 1 239 2 0 8 chain 3962 chr6 171115067 + 92873006 92873077 MADE1 96 + 0 86 207945 23 17 32 31 chain 8778 chr6 171115067 + 92909639 92909744 MER41-int 2638 + 1439 1544 166781 105 chain 29231 chr6 171115067 + 92910666 92910980 AluYb8 318 + 0 312 87903 132 2 0 180 chain 97113 chr6 171115067 + 92936920 92938448 L1PB2 3958 - 120 1672 37539 59 13 12 14 2 0 74 1 0 46 16 15 50 0 3 25 2 0 33 6 4 27 0 3 22 2 0 13 1 13 38 25 24 38 8 9 7 2 0 42 27 27 30 0 2 136 0 2 80 19 20 6 1 0 40 1 0 184 2 0 23 0 1 66 0 1 6 4 3 115 3 1 42 5 0 99 0 24 73 chain 94982 chr6 171115067 + 92946923 92948327 L1PA13 3608 - 120 1516 38103 15 6 5 20 2 0 5 2 0 47 8 5 55 1 0 61 4 2 88 0 1 20 34 24 6 0 2 68 7 6 185 4 14 120 11 13 170 0 1 129 8 10 112 3 6 5 3 0 49 4 0 152 chain 42485 chr6 171115067 + 92948813 92950114 L1PB1 5432 - 144 738 66029 8 1 0 44 1 0 13 6 4 51 2 0 9 2 0 3 2 0 9 1 0 7 1 0 26 705 11 395 1 0 14 chain 17751 chr6 171115067 + 92964296 92964512 AluY 311 + 85 298 133562 39 3 0 174 chain 3307 chr6 171115067 + 92998076 92998134 L1PREC2 3366 - 338 394 218843 16 8 6 34 chain 37291 chr6 171115067 + 93013634 93014136 L1MA1 4479 + 249 762 73093 30 2 0 51 0 16 5 1 0 67 0 2 129 5 0 195 0 1 17 chain 97702 chr6 171115067 + 93065364 93066574 L1P3 4156 + 2751 3997 37368 439 0 5 9 0 23 219 0 4 267 0 1 7 0 1 106 0 1 47 4 5 112 chain 61998 chr6 171115067 + 93098138 93098935 LTR12 884 - 23 884 51902 152 1 0 333 2 0 57 0 66 238 1 2 13 chain 125175 chr6 171115067 + 93111748 93113204 L1PA6 6164 - 3 1461 29331 8 0 1 971 1 2 476 chain 11161 chr6 171115067 + 93113208 93113339 L1PA6 6164 + 4565 4696 155580 64 0 1 49 1 0 17 chain 3141 chr6 171115067 + 93119253 93119294 MER51A 677 + 199 255 222172 27 0 15 14 chain 400651 chr6 171115067 + 93130480 93135510 L1PA5 6144 + 0 6139 10074 113 11 25 71 3 2 146 27 34 27 5 4 147 1 0 183 12 13 137 0 2 50 25 0 211 13 4 931 7 10 167 0 4 31 3 2 875 0 1 69 0 2 508 0 1105 284 0 5 259 0 1 73 5 8 113 6 3 189 0 2 328 chain 18270 chr6 171115067 + 93153717 93153977 L1PA8 5853 - 0 257 132153 90 4 3 19 2 1 47 2 0 6 0 1 7 1 0 20 0 1 62 chain 22001 chr6 171115067 + 93193659 93193951 L1MA2 4263 - 1999 2292 120225 216 12 13 64 chain 94374 chr6 171115067 + 93218833 93220179 L1PA11 4918 + 6 1363 38239 36 11 9 27 2 0 6 14 13 18 1 0 16 2 0 49 1 0 33 9 6 246 0 3 7 3 0 87 1 5 17 0 1 6 1 0 15 0 3 189 13 14 257 7 22 272 chain 12936 chr6 171115067 + 93240111 93240275 AluYk4 311 + 155 301 148479 99 18 0 47 chain 101812 chr6 171115067 + 93256795 93258111 THE1A-int 1579 + 251 1579 36313 12 0 2 79 0 1 288 12 15 4 1 0 4 0 1 452 2 6 435 1 2 17 0 1 9 chain 6663 chr6 171115067 + 93291133 93291212 L1PA11 4918 + 3748 3827 179968 79 chain 5605 chr6 171115067 + 93306001 93306092 L1MC1 2226 + 1888 1980 189034 29 13 14 49 chain 20468 chr6 171115067 + 93322038 93322344 L1PA11 4918 - 416 712 125709 13 1 0 15 2 0 67 2 0 12 9 8 52 8 4 125 chain 2989 chr6 171115067 + 93328653 93328740 L1MB1 2102 + 1965 2052 225237 32 40 40 15 chain 6037 chr6 171115067 + 93329477 93329543 L1PA3long 6157 + 6091 6157 184922 66 chain 141238 chr6 171115067 + 93334041 93335685 L1PA5 6144 - 6 1656 25948 555 0 1 18 6 5 260 0 5 252 0 1 553 chain 29681 chr6 171115067 + 93335685 93336003 AluYb8 318 - 0 318 85900 318 chain 219634 chr6 171115067 + 93336013 93338570 L1P2 5180 + 1948 4510 17909 1478 1 2 332 0 5 79 2 1 665 chain 12201 chr6 171115067 + 93350036 93350187 L1PA5 6144 - 0 152 151420 66 1 2 84 chain 82687 chr6 171115067 + 93350187 93351130 L1PA5 6144 + 4897 5843 42467 772 0 2 14 1 0 99 0 1 25 0 1 32 chain 83075 chr6 171115067 + 93354860 93355801 L1PA3long 6157 + 5211 6152 42299 941 chain 431967 chr6 171115067 + 93360875 93365925 L1PA5 6144 - 0 5059 9271 138 0 5 495 0 1 778 0 1 241 0 3 367 1 4 323 0 1 906 1 0 181 0 1 718 1 0 567 6 11 232 9 0 86 chain 13518 chr6 171115067 + 93403087 93403343 MER67C 710 + 306 533 146294 55 36 14 87 14 6 24 9 10 31 chain 23839 chr6 171115067 + 93408604 93408923 AluY 311 + 0 301 111258 32 1 0 101 2 0 147 12 1 8 4 0 12 chain 72716 chr6 171115067 + 93430192 93431072 L1PA7 6471 + 5574 6458 47159 46 2 1 72 0 1 286 0 2 330 5 7 139 chain 4646 chr6 171115067 + 93433908 93434173 LTR12C 1709 + 654 718 199111 22 201 0 42 chain 250395 chr6 171115067 + 93438647 93442051 L1PA6 6164 - 3 3086 16219 358 0 3 6 2 0 87 0 2 288 1 4 98 0 1 99 11 14 15 39 38 469 0 1 693 5 6 409 329 11 259 1 0 110 0 1 10 14 0 101 chain 74786 chr6 171115067 + 93442051 93442909 L1PA6 6164 + 2209 3073 45914 124 0 1 367 0 3 171 0 2 196 chain 30432 chr6 171115067 + 93497213 93497593 MLT2A1 477 - 98 477 83574 174 0 1 24 0 1 9 6 3 167 chain 16482 chr6 171115067 + 93500824 93501012 L1PA5 6144 - 0 188 136975 188 chain 6116 chr6 171115067 + 93521792 93521866 MER5A1 166 - 66 141 184308 63 0 1 11 chain 5927 chr6 171115067 + 93533908 93533993 MER41A 554 + 441 532 185923 20 8 14 57 chain 32662 chr6 171115067 + 93535120 93535594 MER4A1 472 + 0 472 79745 21 1 0 203 7 28 15 29 8 72 6 5 120 chain 131067 chr6 171115067 + 93540989 93542595 MER4-int 2692 + 1081 2680 27843 13 0 1 321 0 1 41 2 0 435 1 0 123 5 0 108 1 0 556 chain 37651 chr6 171115067 + 93557042 93557485 LTR2 463 + 0 463 72618 162 7 27 274 chain 243276 chr6 171115067 + 93578955 93581973 L1P2 5180 + 2 3056 16602 136 3 14 95 1 0 261 9 7 187 5 4 81 1 0 5 1 0 141 0 25 7 0 1 62 9 12 162 0 1 1641 8 9 203 chain 49313 chr6 171115067 + 93589693 93590312 L1P3 4156 - 104 717 59512 219 0 1 229 1 4 105 22 12 43 chain 435561 chr6 171115067 + 93590322 93595910 L1PA8A 6298 + 499 6289 9180 14 1 0 188 0 19 57 6 7 297 5 12 9 0 4 5 0 3 27 1 0 196 0 1 488 0 3 254 0 82 221 0 22 44 0 1 46 11 17 173 7 14 264 0 1 6 0 2 95 0 9 126 0 9 138 2 1 38 8 0 26 3 7 18 0 5 33 1 0 186 0 12 75 1 0 64 0 2 775 0 1 47 1 4 753 0 1 71 0 4 13 16 15 63 0 3 6 1 2 269 0 1 359 0 2 80 chain 28919 chr6 171115067 + 93597104 93597412 AluYb8 318 - 10 318 89375 308 chain 26912 chr6 171115067 + 93645212 93645589 THE1C 375 - 0 373 96587 25 1 0 152 17 13 4 0 1 12 1 0 80 1 2 84 chain 5295 chr6 171115067 + 93647896 93648114 LTR32 486 - 11 474 192067 46 136 381 36 chain 12999 chr6 171115067 + 93656161 93656322 MER47A 366 - 146 307 148254 161 chain 532794 chr6 171115067 + 93661595 93667733 L1PA4 6152 + 6 6151 3875 1279 0 1 821 0 3 876 0 3 951 0 1 688 1 0 1522 chain 25001 chr6 171115067 + 93678876 93679184 L1PA7 6471 + 6154 6461 104777 64 2 1 242 chain 57827 chr6 171115067 + 93692967 93693596 L1PA2 6032 - 752 1381 54072 629 chain 67595 chr6 171115067 + 93693596 93694343 L1PA2 6032 + 5283 6030 49401 583 5 0 7 0 5 152 chain 531906 chr6 171115067 + 93704900 93711030 L1PA5 6144 + 3 6144 3971 1412 0 3 823 14 16 492 5 7 528 0 1 502 9 0 92 1 0 438 0 4 371 0 1 590 0 1 7 0 4 97 0 3 749 chain 21003 chr6 171115067 + 93729151 93729416 AluY 311 + 39 306 123899 93 0 1 36 5 6 131 chain 315911 chr6 171115067 + 93741743 93745344 L1P1 4361 + 1 3601 12771 1033 1 0 649 0 1 637 0 1 855 1 0 103 1 0 321 chain 86944 chr6 171115067 + 93782648 93783694 MER11B 1079 + 0 1065 40806 316 1 18 203 0 1 4 1 0 224 6 8 291 chain 14502 chr6 171115067 + 93824802 93825165 THE1B 368 + 0 368 142887 90 143 150 66 7 6 35 2 1 20 chain 13450 chr6 171115067 + 93840329 93840476 L1PA3long 6157 + 6005 6152 146531 147 chain 301169 chr6 171115067 + 93860319 93864681 L1PB1 5432 - 10 4407 13361 8 1 0 10 1 0 13 1 0 21 1 0 24 2 0 19 3 1 17 16 7 6 2 0 14 1 0 42 8 7 12 2 1 38 16 14 9 2 0 3 2 0 12 3 2 4 1 0 25 5 0 8 22 39 437 0 1 243 0 1 48 0 1 123 0 1 207 13 12 22 11 8 103 0 4 120 4 7 31 0 1 83 0 2 586 6 11 180 2 0 6 2 3 5 2 0 225 2 0 7 1 4 89 7 0 323 1 2 98 3 1 117 0 19 70 8 7 76 1 0 6 34 36 43 10 14 154 0 4 32 0 1 82 1 0 11 24 21 40 24 48 265 chain 37104 chr6 171115067 + 93864713 93865180 MER41A 554 - 86 554 73374 26 6 7 435 chain 94460 chr6 171115067 + 93869561 93870630 L1PA4 6152 - 9 1078 38219 104 0 1 744 1 0 220 chain 25299 chr6 171115067 + 93872185 93872472 L1PA5 6144 + 5852 6139 103230 287 chain 75342 chr6 171115067 + 93883083 93884048 LTR5_Hs 974 + 1 974 45852 288 0 1 88 0 2 87 0 1 188 1 0 163 8 15 19 20 18 103 chain 82777 chr6 171115067 + 93890748 93891678 L1PA4 6152 - 9 940 42428 831 0 1 99 chain 13224 chr6 171115067 + 93899291 93899444 L1PA7 6471 - 5 158 147373 153 chain 14005 chr6 171115067 + 93902373 93902564 L1PA7 6471 + 6273 6461 144564 75 14 11 102 chain 43365 chr6 171115067 + 93907907 93908420 MER9a1 513 - 0 513 64975 513 chain 96352 chr6 171115067 + 93908420 93909610 HERVK9-int 4720 - 0 1256 37716 76 0 1 272 10 21 15 0 2 158 0 4 48 0 1 4 1 0 218 4 52 384 chain 26479 chr6 171115067 + 93921989 93922287 AluSp 311 + 1 299 98127 298 chain 79207 chr6 171115067 + 93933496 93934364 L1PA4 6152 - 762 1630 43941 868 chain 66779 chr6 171115067 + 93934364 93935114 L1PA4 6152 + 5400 6151 49636 638 0 1 112 chain 97304 chr6 171115067 + 93992183 93993530 LTR12C 1709 + 0 1709 37482 21 0 9 10 12 3 235 7 11 49 5 48 77 29 24 167 0 278 139 0 47 97 20 13 105 0 5 39 1 0 163 1 0 87 6 5 77 chain 39409 chr6 171115067 + 93994239 93994722 L1PA7 6471 + 5991 6468 70150 76 6 0 401 chain 3053 chr6 171115067 + 94097120 94097157 THE1C-int 1605 - 1452 1489 223951 37 chain 155659 chr6 171115067 + 94144845 94146762 L1PA7 6471 + 4534 6459 23896 419 2 0 333 1 2 333 1 0 344 0 9 157 0 1 327 chain 24124 chr6 171115067 + 94173283 94173626 THE1B 368 - 20 368 109622 99 22 21 14 0 1 6 3 9 29 1 0 169 chain 311816 chr6 171115067 + 94189805 94193728 L1PA7 6471 + 2493 6467 12929 56 6 19 68 6 0 196 0 1 4 2 0 71 0 1 671 1 3 189 0 1 231 4 6 30 0 1 128 1 2 71 0 1 427 0 8 75 0 1 195 1 0 66 1 0 4 0 1 325 1 0 124 0 5 147 1 0 22 14 21 415 0 2 202 23 42 124 8 5 13 chain 6998 chr6 171115067 + 94219466 94219578 MER84 505 + 388 493 177471 65 19 12 28 chain 23507 chr6 171115067 + 94243700 94244022 L1PA8 5853 - 0 315 113090 93 1 0 19 2 1 47 6 5 7 1 0 73 2 0 44 1 0 26 chain 80596 chr6 171115067 + 94249688 94250727 L1PA10 4194 + 3126 4161 43344 312 1 0 5 0 3 636 2 0 34 3 0 34 1 0 11 chain 155541 chr6 171115067 + 94255299 94257104 L1PA5 6144 - 15 1825 23918 127 0 14 6 15 1 175 0 1 969 0 3 16 0 1 164 1 0 29 0 1 303 chain 145126 chr6 171115067 + 94257104 94258726 L1PA5 6144 + 2712 4335 25304 962 0 1 660 chain 3462 chr6 171115067 + 94263806 94263844 MLT1H1 527 + 462 500 215971 38 chain 57066 chr6 171115067 + 94274834 94275527 L1PA7 6471 - 12 709 54492 144 1 0 14 2 3 162 0 1 123 0 2 57 0 1 190 chain 23853 chr6 171115067 + 94299359 94299689 THE1B 368 - 0 339 111168 75 1 0 94 4 0 31 1 0 108 1 16 15 chain 93134 chr6 171115067 + 94328488 94329637 L1PA7 6471 + 5304 6461 38621 317 0 3 99 1 0 414 11 15 92 0 2 61 0 1 6 1 0 147 chain 551651 chr6 171115067 + 94341306 94347327 L1PA2 6032 - 0 6032 1231 852 0 4 1758 0 3 283 0 4 47 1 0 597 0 1 2483 chain 11157 chr6 171115067 + 94354842 94354979 MER50B 698 + 529 666 155609 137 chain 27082 chr6 171115067 + 94356529 94356833 AluYg6 310 + 0 300 95993 131 3 0 147 2 1 21 chain 29944 chr6 171115067 + 94356833 94357246 L1PA7 6471 - 13 420 84987 27 0 1 30 12 10 67 17 12 260 chain 9979 chr6 171115067 + 94357246 94357369 L1PA7 6471 + 5918 6040 160681 93 1 0 29 chain 14324 chr6 171115067 + 94415000 94415177 L1PA16 3655 - 496 673 143483 177 chain 26213 chr6 171115067 + 94421997 94422382 THE1C 375 + 0 375 99154 88 37 30 67 3 2 91 1 0 72 1 0 25 chain 23432 chr6 171115067 + 94483581 94483873 AluY 311 + 0 303 113465 62 6 9 52 3 4 68 0 7 101 chain 109480 chr6 171115067 + 94514405 94515669 L1PA5 6144 - 6 1267 34323 252 1 0 50 1 0 605 6 5 349 chain 28690 chr6 171115067 + 94534351 94534654 AluYa5 310 - 7 310 90369 303 chain 35142 chr6 171115067 + 94539873 94540279 LTR7 482 - 44 482 76005 71 1 2 83 1 32 250 chain 292784 chr6 171115067 + 94541484 94545014 HERVH-int 3825 - 0 3825 13835 79 1 0 297 1 4 6 3 0 101 8 218 1402 10 37 91 0 1 365 16 1 340 0 1 66 0 1 36 1 0 49 2 1 7 0 20 47 21 0 24 0 17 10 6 0 15 4 0 9 1 0 9 8 7 20 0 56 106 0 2 157 0 11 212 chain 39684 chr6 171115067 + 94545016 94545467 LTR7 482 - 0 482 69776 204 1 32 246 chain 21570 chr6 171115067 + 94546103 94546428 L1PA13 3608 + 3141 3461 121885 19 1 0 113 2 0 42 1 7 13 1 0 51 1 0 10 2 0 48 2 0 4 2 0 13 chain 3067 chr6 171115067 + 94551032 94551067 MLT2B4 540 - 431 466 223632 35 chain 28132 chr6 171115067 + 94552540 94552838 AluYa5 310 - 12 310 92534 298 chain 27812 chr6 171115067 + 94556408 94556779 MLT2A1 477 - 83 461 93657 214 0 1 6 1 5 25 4 5 64 0 1 57 chain 26412 chr6 171115067 + 94570397 94570701 AluYk4 311 + 0 301 98367 281 3 0 20 chain 3116 chr6 171115067 + 94572791 94572919 MLT1H1 527 - 76 203 222634 26 81 80 21 chain 563543 chr6 171115067 + 94575470 94581496 L1HS 6032 - 0 6027 251 3574 0 1 2452 chain 129362 chr6 171115067 + 94590405 94591873 L1PA5 6144 - 12 1480 28230 159 1 2 257 2 0 850 0 1 199 chain 34398 chr6 171115067 + 94591873 94592253 L1PA5 6144 + 4270 4650 76781 380 chain 17450 chr6 171115067 + 94616966 94617336 THE1B 368 + 0 366 134375 108 4 6 55 91 86 51 24 23 37 chain 32250 chr6 171115067 + 94618250 94618668 L1PA8A 6298 - 587 1006 80441 141 0 2 78 2 1 197 chain 13114 chr6 171115067 + 94633755 94633903 L1PA5 6144 + 5991 6139 147788 148 chain 2898 chr6 171115067 + 94726235 94726269 MER3 215 - 59 93 227058 34 chain 142694 chr6 171115067 + 94729502 94731902 L1PB1 5432 - 17 2103 25698 11 1 0 13 1 0 21 1 0 23 3 1 14 8 5 28 10 0 3 1 0 16 6 5 34 5 4 16 2 1 50 3 1 11 7 0 12 2 1 7 1 0 22 9 0 13 4 0 17 1 3 284 295 0 35 11 9 40 20 18 67 14 15 69 2 1 70 9 13 88 0 5 86 4 5 538 9 5 344 0 23 39 chain 3623 chr6 171115067 + 94772538 94772602 MLT1B 390 + 12 85 213293 32 12 21 20 chain 24748 chr6 171115067 + 94807371 94807660 AluY 311 + 10 300 106180 122 0 1 167 chain 8251 chr6 171115067 + 94832812 94832900 L1PA2 6032 + 5944 6032 169674 88 chain 31021 chr6 171115067 + 94900541 94901050 MLT2A1 477 + 0 477 82477 169 13 11 22 0 2 179 89 57 37 chain 566460 chr6 171115067 + 94907744 94913772 L1HS 6032 - 0 6026 120 3017 1 0 2305 1 0 704 chain 6014 chr6 171115067 + 94933727 94933808 L1PREC2 3366 + 1679 1763 185104 11 1 4 69 chain 390484 chr6 171115067 + 94948129 94953183 L1PA7 6471 + 10 6458 10438 19 1 14 196 11 13 158 0 3 800 0 4 51 1 0 161 19 14 28 12 13 33 0 17 389 17 1376 250 4 8 66 3 0 86 2 1 118 8 0 168 6 7 365 0 1 89 1 2 144 0 1 9 1 0 6 2 1 50 0 4 242 0 1 37 1 0 376 12 5 71 0 2 212 1 0 197 1 12 296 5 6 94 4 0 92 3 4 136 chain 32863 chr6 171115067 + 94974292 94974742 THE1C-int 1605 - 1119 1577 79432 17 22 29 77 6 7 328 chain 17678 chr6 171115067 + 94992872 94993148 AluSx4 309 + 11 259 133751 61 31 0 65 7 4 6 0 3 40 0 3 66 chain 56314 chr6 171115067 + 95011481 95012155 L1PA7 6471 + 5780 6453 54957 527 14 13 133 chain 115846 chr6 171115067 + 95018107 95019472 L1PA5 6144 - 55 1427 32515 155 0 8 651 1 0 558 chain 26952 chr6 171115067 + 95021620 95021959 L1PA7 6471 + 6111 6458 96444 28 1 0 178 5 14 127 chain 8664 chr6 171115067 + 95046050 95046149 L1PA7 6471 + 6207 6305 167402 73 1 0 25 chain 12533 chr6 171115067 + 95046153 95046302 L1PA7 6471 + 6308 6457 150107 149 chain 8893 chr6 171115067 + 95130086 95130191 L1PA6 6164 - 9 121 166168 52 0 7 53 chain 15325 chr6 171115067 + 95130191 95130385 L1PA6 6164 + 5858 6053 140410 144 2 3 48 chain 22776 chr6 171115067 + 95141455 95141736 L1PA7 6471 - 1373 1654 116700 281 chain 54576 chr6 171115067 + 95141745 95142400 L1PA7 6471 + 5118 5774 55982 227 0 1 138 0 1 133 1 0 156 chain 55672 chr6 171115067 + 95142400 95143087 L1PA7 6471 + 5778 6466 55326 163 0 1 128 0 3 386 3 0 7 chain 27691 chr6 171115067 + 95158902 95159258 THE1B 368 - 0 366 94074 168 4 0 28 1 0 107 0 9 6 0 6 42 chain 28590 chr6 171115067 + 95181589 95181888 AluYk12 309 + 3 302 90784 299 chain 29698 chr6 171115067 + 95186240 95186785 L1PB1 5432 + 4904 5418 85840 88 4 6 6 2 0 99 1 2 12 9 6 15 1 0 8 1 0 12 8 4 5 2 0 52 1 0 18 1 0 44 1 0 7 33 22 4 0 1 12 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 33889 chr6 171115067 + 95200179 95200572 L1PA4 6152 + 5741 6143 77795 147 0 7 108 0 1 33 1 2 104 chain 436767 chr6 171115067 + 95221070 95227375 L1PA8A 6298 + 34 6291 9138 6 1 0 16 1 0 11 24 13 20 92 31 4 0 1 13 1 0 8 2 1 12 1 0 7 21 12 15 36 53 9 2 0 31 15 13 4 0 1 10 12 5 32 10 5 36 0 15 4 1 0 11 4 2 20 10 8 50 2 1 18 10 0 7 9 19 57 9 0 4 0 7 51 0 4 6 12 7 25 8 7 80 4 0 70 0 1 147 0 6 105 0 16 351 6 8 14 0 2 5 1 0 572 13 14 56 4 0 215 0 2 120 0 1 64 0 4 60 1 2 82 3 4 162 40 0 11 15 39 369 0 1 40 0 5 51 50 53 215 0 1 18 17 8 75 20 18 78 0 1 575 0 2 63 0 1 16 3 0 5 0 3 5 0 4 527 1 3 5 2 0 400 16 17 75 0 1 419 3 6 214 7 13 65 chain 3534 chr6 171115067 + 95251305 95251347 L1P4 1494 - 626 667 214802 20 1 0 21 chain 39143 chr6 171115067 + 95263636 95264086 LTR7 482 - 0 482 70548 176 0 1 8 0 31 266 chain 292619 chr6 171115067 + 95265356 95268876 HERVH-int 3825 - 0 3825 13852 225 3 8 261 1 211 43 6 0 7 0 6 1315 2 0 31 10 37 324 0 1 575 0 3 13 0 2 6 0 1 57 2 1 22 22 72 24 1 0 22 0 37 33 2 0 218 7 5 178 24 1 86 chain 39187 chr6 171115067 + 95268878 95269328 LTR7 482 - 0 482 70475 176 1 2 7 0 31 266 chain 12369 chr6 171115067 + 95274644 95274787 THE1A-int 1579 + 1431 1574 150758 143 chain 96101 chr6 171115067 + 95283708 95284798 L1PA5 6144 + 5049 6140 37792 945 0 1 145 chain 9784 chr6 171115067 + 95301063 95301183 MER57B1 401 + 0 120 161685 120 chain 30211 chr6 171115067 + 95311444 95311762 AluYb8 318 - 0 318 84161 318 chain 11116 chr6 171115067 + 95315811 95316069 L1PB1 5432 + 5186 5420 155752 34 2 1 15 1 0 37 79 62 11 3 1 23 1 0 21 1 0 13 1 0 16 chain 4342 chr6 171115067 + 95317328 95317744 L1MCb 1641 + 430 791 202695 16 181 114 23 85 89 26 13 0 8 37 58 27 chain 27017 chr6 171115067 + 95335639 95335922 AluYa5 310 - 0 283 96225 283 chain 11616 chr6 171115067 + 95380093 95380233 THE1B-int 1605 + 1463 1598 153827 117 5 0 18 chain 17823 chr6 171115067 + 95442851 95443077 L1PA7 6471 - 10 244 133328 145 1 9 80 chain 76482 chr6 171115067 + 95458907 95459822 L1PA7 6471 - 2 927 45222 775 0 1 6 1 10 133 chain 553218 chr6 171115067 + 95467486 95473622 L1PA3long 6157 + 0 6147 1046 1162 0 3 1678 0 1 418 0 2 913 0 1 493 1 0 269 1 2 368 0 4 833 chain 496527 chr6 171115067 + 95489190 95495614 L1PA7 6471 - 39 6468 7037 130 5 6 282 26 4 247 5 8 125 9 10 14 0 4 651 1 0 198 8 9 12 1 6 46 1 5 137 1 2 8 0 1 95 2 1 421 7 6 144 18 11 17 0 3 242 2 0 10 6 13 78 45 6 324 12 16 139 0 9 93 5 10 248 1 3 68 0 1 48 0 2 145 3 23 12 0 1 46 0 1 30 1 0 93 1 0 376 0 1 156 0 2 778 10 9 59 0 1 377 1 2 148 0 15 16 16 1 224 chain 13922 chr6 171115067 + 95507419 95507733 L1PB1 5432 - 12 298 144852 16 5 4 9 1 0 21 1 0 25 2 0 13 8 5 30 11 1 12 8 7 41 18 16 53 17 11 9 1 0 13 chain 158691 chr6 171115067 + 95516249 95518043 L1PA4 6152 + 4346 6152 23505 289 1 0 541 0 1 108 0 8 717 0 4 138 chain 540677 chr6 171115067 + 95533881 95540025 L1PA2 6032 + 2 6028 2713 309 1 0 238 0 1 157 0 7 54 138 10 2365 0 2 904 0 1 1978 chain 14424 chr6 171115067 + 95550512 95550749 MSTA 426 + 151 426 143134 43 50 88 144 chain 536054 chr6 171115067 + 95560849 95566873 L1PA3long 6157 + 0 6157 3440 153 0 1 164 4 3 447 6 136 1350 4 6 954 0 1 2942 chain 370707 chr6 171115067 + 95579804 95584156 L1P1 4361 - 20 4360 11069 12 2 1 23 1 0 155 1 0 217 0 1 46 0 2 1844 0 2 1065 0 1 142 41 24 232 1 0 321 0 3 249 chain 11985 chr6 171115067 + 95593245 95593373 L1PA4 6152 + 6008 6136 152269 128 chain 20949 chr6 171115067 + 95615558 95615936 L1MA1 4479 + 3820 4190 124111 6 1 0 19 1 0 17 1 0 10 3 16 58 18 14 114 5 4 29 2 0 35 1 0 9 9 5 16 6 0 18 chain 53475 chr6 171115067 + 95620506 95621084 L1PA3long 6157 - 749 1327 56632 578 chain 70043 chr6 171115067 + 95621084 95621847 L1PA3long 6157 + 5386 6149 48374 763 chain 29295 chr6 171115067 + 95637844 95638151 AluYb8 318 - 11 318 87597 307 chain 544511 chr6 171115067 + 95651856 95657877 L1PA2 6032 + 6 6032 2143 250 1 0 872 0 3 522 0 1 57 0 1 2604 0 1 196 1 0 1132 0 1 386 chain 30558 chr6 171115067 + 95658874 95659192 AluYb8 318 + 0 318 83290 318 chain 13380 chr6 171115067 + 95664339 95664487 L1PA4 6152 + 5997 6145 146783 148 chain 95466 chr6 171115067 + 95674342 95675558 L1PA8A 6298 - 8 1255 37967 95 15 14 16 0 1 137 0 1 267 0 27 188 0 1 59 4 1 135 1 6 299 chain 30290 chr6 171115067 + 95678231 95678746 L1PA13 3608 + 2975 3477 83960 66 1 3 8 2 0 76 1 0 33 1 0 109 7 5 31 13 14 16 1 0 18 18 17 20 1 0 5 2 0 48 2 0 4 2 0 18 1 0 11 chain 90203 chr6 171115067 + 95834308 95835377 MER11C 1089 - 16 1089 39574 41 4 0 287 1 2 214 1 7 95 8 10 55 1 0 362 chain 106405 chr6 171115067 + 95842540 95843806 L1PA5 6144 - 7 3378 35152 11 0 2 311 0 3 447 0 2076 152 0 1 248 1 24 96 chain 24299 chr6 171115067 + 95844243 95844542 AluSq2 311 + 11 307 108664 39 3 0 257 chain 43110 chr6 171115067 + 95847044 95847530 L1PA4 6152 + 5657 6143 65276 486 chain 7626 chr6 171115067 + 95855521 95855671 L1PA16 3655 - 1082 1230 173375 69 28 35 7 9 0 37 chain 31826 chr6 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171115067 + 95933730 95933829 L1MA3 4352 + 4260 4352 201859 22 11 9 23 1 0 14 6 2 22 chain 3278 chr6 171115067 + 95949667 95949710 L1M3b 1512 + 686 744 219400 7 0 15 36 chain 3895 chr6 171115067 + 95968139 95968195 MER65C 458 + 151 316 208939 46 0 109 10 chain 106501 chr6 171115067 + 96002910 96004441 L1PA11 4918 - 351 1858 35122 13 1 0 12 13 9 13 29 19 13 1 0 16 2 0 65 2 0 11 2 1 50 16 12 4 1 0 16 1 0 104 19 1 19 0 5 206 2 1 205 0 1 89 0 4 14 1 0 131 0 4 252 5 6 40 0 4 12 0 1 64 0 3 87 chain 72127 chr6 171115067 + 96031811 96032784 MER11A 1151 + 0 1151 47420 45 10 109 141 1 0 31 0 2 60 1 13 42 0 1 93 0 1 22 1 0 95 0 29 124 0 1 7 16 49 52 0 1 53 1 2 100 0 1 11 16 15 51 chain 30194 chr6 171115067 + 96050614 96050928 AluYb8 318 + 0 314 84209 314 chain 40707 chr6 171115067 + 96071499 96072301 L1PA8A 6298 - 8 507 68294 274 304 0 44 0 1 180 chain 98573 chr6 171115067 + 96091415 96092833 L1PA11 4918 + 9 1425 37132 5 1 0 28 2 0 40 0 13 17 7 6 10 2 0 53 1 0 32 11 7 34 2 1 61 0 1 23 0 1 173 0 1 170 0 2 123 1 0 98 9 7 51 40 41 341 9 3 74 chain 76382 chr6 171115067 + 96098714 96099755 MER11C 1089 + 0 1064 45273 150 0 2 94 0 9 62 0 4 21 1 0 44 1 0 19 0 6 121 46 44 35 5 7 58 1 0 4 10 14 5 1 0 38 0 1 127 0 1 54 1 0 77 0 1 66 chain 83754 chr6 171115067 + 96113094 96113992 L1PA2 6032 - 1692 2591 42007 544 0 1 354 chain 156075 chr6 171115067 + 96113997 96115683 L1PA2 6032 + 4346 6032 23849 1686 chain 23103 chr6 171115067 + 96118467 96118800 LTR12C 1709 + 691 1079 115125 146 1 0 90 6 5 44 2 43 18 3 19 23 chain 27089 chr6 171115067 + 96122885 96123260 THE1A 353 - 0 353 95974 130 0 3 6 26 2 102 1 0 110 chain 219472 chr6 171115067 + 96156089 96158532 L1PA4 6152 + 3707 6152 17919 832 0 1 753 1 2 857 chain 13958 chr6 171115067 + 96158701 96158918 L1MA3 4352 - 20 225 144717 4 1 0 11 1 0 29 1 0 5 2 1 24 2 0 27 6 0 104 chain 254975 chr6 171115067 + 96167003 96170141 L1PA7 6471 + 2845 6459 15981 44 0 4 203 0 4 118 0 1 109 0 1 81 0 1 118 3 2 470 3 0 167 0 5 98 13 12 18 0 2 63 3 4 11 0 442 132 1 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30 0 1 5 1 0 51 66 6 6 5 0 23 2 0 8 17 12 9 2 0 53 2 1 16 1 0 41 6 5 13 3 0 7 23 14 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 132694 chr6 171115067 + 96273929 96275419 L1PA4 6152 - 6 1497 27481 107 0 1 25 11 12 611 1 0 735 chain 28678 chr6 171115067 + 96296744 96297119 MLT2A2 560 - 184 560 90422 169 14 15 192 chain 145443 chr6 171115067 + 96310174 96311777 L1PA3long 6157 - 0 1604 25265 856 0 1 747 chain 162881 chr6 171115067 + 96311777 96352103 L1PA3long 6157 + 3059 6157 22953 629 2 1 852 37774 546 927 0 1 142 chain 83035 chr6 171115067 + 96335935 96337117 THE1B-int 1605 - 5 1210 42321 262 4 0 313 5 6 252 72 72 19 0 2 5 14 11 12 13 14 69 1 2 107 1 26 33 chain 10705 chr6 171115067 + 96341932 96342049 L1PA4 6152 - 16 133 157390 117 chain 124945 chr6 171115067 + 96346059 96347532 L1PA5 6144 - 1 1465 29412 5 2 0 107 1 0 23 0 2 8 1 0 27 0 2 51 10 0 310 0 1 230 0 1 82 1 0 615 chain 6714 chr6 171115067 + 96347532 96347616 THE1C 375 + 292 375 179583 58 1 0 25 chain 11285 chr6 171115067 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18 1 0 13 1 0 21 1 0 21 chain 25737 chr6 171115067 + 96576861 96577168 AluY 311 + 10 310 101130 123 8 1 176 chain 19713 chr6 171115067 + 96604192 96604632 MER61D 487 - 0 487 128059 42 5 0 39 2 1 28 2 1 21 1 3 5 2 0 15 22 27 10 7 0 7 91 147 141 chain 33204 chr6 171115067 + 96611200 96611624 MER57A1 433 + 0 433 78874 136 5 0 121 6 20 156 chain 243785 chr6 171115067 + 96629342 96632691 L1PB1 5432 - 14 3318 16575 14 1 0 13 1 0 21 1 0 24 1 0 14 1 0 4 3 1 19 17 16 12 1 0 44 1 0 15 2 1 53 31 24 5 1 0 23 3 0 8 3 4 124 1 2 207 0 2 86 0 1 52 0 1 239 4 5 69 38 20 123 1 0 209 0 1 226 6 0 31 3 4 241 1 5 613 5 1 22 2 0 193 0 5 6 10 5 17 0 6 5 2 0 87 1 0 4 8 0 126 11 12 63 1 0 176 chain 147976 chr6 171115067 + 96637362 96639070 L1P1 4361 - 1798 3514 24882 1619 1 9 88 chain 260166 chr6 171115067 + 96639080 96642087 L1PA5 6144 + 3105 6142 15688 91 1 0 435 9 12 39 0 26 559 0 1 943 0 1 930 chain 49162 chr6 171115067 + 96668380 96669024 L1PA8 5853 - 0 636 59627 93 1 0 15 1 0 4 0 3 3 4 0 47 2 1 8 2 1 70 2 0 43 9 8 340 chain 28077 chr6 171115067 + 96669024 96669372 L1PA8 5853 + 4864 5211 92723 145 5 0 39 0 4 159 chain 17473 chr6 171115067 + 96671554 96671794 L1MA3 4352 - 534 781 134319 97 13 20 130 chain 28099 chr6 171115067 + 96691463 96691761 AluYk11 308 - 10 308 92653 298 chain 32066 chr6 171115067 + 96700955 96701358 L1PA5 6144 + 5772 6142 80741 199 35 2 169 chain 130234 chr6 171115067 + 96707832 96709384 LTR12C 1709 - 0 1709 28035 442 4 0 39 0 4 106 4 2 4 1 0 116 0 159 356 0 1 480 chain 42480 chr6 171115067 + 96710108 96710903 L1MA1 4479 + 3435 4186 66035 27 1 2 49 1 0 68 10 15 49 13 28 42 1 0 24 2 0 16 1 0 67 21 17 7 2 0 7 2 0 71 2 1 4 0 1 15 2 1 6 3 0 29 33 0 97 1 0 29 2 0 33 2 1 10 1 0 6 26 16 13 chain 263607 chr6 171115067 + 96718567 96721734 L1PA7 6471 - 2 3177 15502 14 0 4 321 6 3 123 0 1 205 0 2 175 1 0 15 0 4 445 2 4 510 9 7 11 0 1 268 0 1 353 1 0 607 0 1 4 1 0 96 chain 15585 chr6 171115067 + 96732921 96733372 LTR29 598 - 152 598 139626 9 6 0 66 25 0 37 24 33 31 105 128 33 1 2 9 28 24 12 4 1 61 chain 25554 chr6 171115067 + 96765036 96765392 THE1B 368 - 0 368 101961 176 2 0 11 10 9 108 5 20 44 chain 31585 chr6 171115067 + 96774836 96775383 L1PA14 3548 + 2939 3465 81518 14 2 0 42 21 18 60 1 3 31 11 7 17 2 0 5 2 1 84 1 0 59 0 6 45 1 0 11 5 1 35 4 2 13 1 0 5 1 0 17 1 0 38 6 0 12 chain 123310 chr6 171115067 + 96789225 96790791 THE1A-int 1579 - 5 1579 29943 150 0 2 95 0 1 120 0 1 628 0 1 42 7 6 248 3 7 273 chain 15798 chr6 171115067 + 96825876 96826086 L1PA16 3655 - 89 300 138959 56 5 6 149 chain 5303 chr6 171115067 + 96845999 96846104 L1PA17 2846 + 2592 2692 191995 8 1 0 32 1 0 9 13 12 31 2 0 8 chain 11224 chr6 171115067 + 96851191 96851331 LTR8 732 + 592 732 155330 140 chain 16517 chr6 171115067 + 96851944 96852483 HUERS-P1-int 2401 + 243 683 136869 34 3 0 14 2 0 7 1 0 15 165 104 13 3 0 6 1 0 37 1 0 8 2 0 24 22 1 24 1 0 5 2 0 9 39 28 12 2 12 87 chain 19576 chr6 171115067 + 96853791 96854089 THE1B 368 - 66 368 128443 62 2 1 9 1 0 16 0 4 10 1 0 4 24 27 169 chain 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3 156 chain 32370 chr6 171115067 + 97007782 97008175 L1PA7 6471 + 6078 6470 80241 388 1 0 4 chain 89058 chr6 171115067 + 97039598 97040679 MER11C 1089 - 0 1089 39982 11 3 1 189 1 2 148 0 1 45 0 4 297 1 0 74 0 4 63 0 1 249 chain 6922 chr6 171115067 + 97069991 97070324 L1MB7 1623 + 1113 1429 178014 12 0 14 48 223 192 50 chain 498417 chr6 171115067 + 97085631 97091335 L1PA4 6152 + 2 6136 6931 302 1 0 836 0 1 103 1 0 709 0 98 266 1 2 575 1 0 378 0 1 715 1 0 177 1 2 191 0 2 244 0 356 272 19 1 402 10 0 336 1 0 94 0 3 68 chain 6174 chr6 171115067 + 97092885 97092984 L1MA4 2864 - 223 328 183777 30 15 21 54 chain 28733 chr6 171115067 + 97132691 97133079 THE1B-int 1605 + 0 370 90195 179 25 4 58 0 3 126 chain 29219 chr6 171115067 + 97143570 97144103 L1PB1 5432 + 4912 5419 87959 43 0 1 108 0 1 17 18 23 9 1 0 26 1 0 6 1 0 12 4 0 11 2 0 50 3 2 10 6 5 44 1 0 16 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 18774 chr6 171115067 + 97153198 97153520 THE1D 372 + 0 331 130760 119 16 16 27 26 34 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97256653 97256849 L1PA3long 6157 - 0 196 134242 196 chain 73761 chr6 171115067 + 97266599 97267558 L1PA8 5853 + 4890 5853 46643 23 0 1 84 3 0 8 0 9 124 0 3 54 4 0 40 0 2 326 1 0 22 1 3 19 2 0 70 2 1 13 11 10 38 2 1 112 chain 24811 chr6 171115067 + 97297297 97297754 L1PA15 4387 + 3912 4366 105834 20 1 0 19 0 1 152 6 5 20 17 32 18 0 1 5 1 0 22 4 0 9 2 1 50 30 27 20 3 1 14 5 0 20 1 0 8 1 0 9 chain 25133 chr6 171115067 + 97298628 97298938 AluY 311 + 0 305 104104 26 1 0 97 8 4 178 chain 26854 chr6 171115067 + 97299050 97299340 AluYa5 310 + 10 299 96794 87 1 0 202 chain 17691 chr6 171115067 + 97304282 97304555 L1PB2 3958 - 120 392 133724 36 0 1 9 1 2 15 2 1 21 12 8 64 1 0 64 1 0 8 0 4 39 chain 19848 chr6 171115067 + 97306596 97307235 THE1B 368 + 7 368 127660 37 0 15 113 303 1 25 35 45 19 16 15 91 chain 119901 chr6 171115067 + 97307252 97308807 THE1B-int 1605 + 17 1600 31091 16 8 9 110 1 0 4 0 1 35 0 3 233 1 26 178 6 7 192 11 9 741 2 1 5 0 1 12 chain 54821 chr6 171115067 + 97350143 97350920 L1PA11 4918 - 412 1191 55821 18 1 0 16 3 1 77 2 1 55 8 4 6 1 0 19 10 19 86 1 2 7 0 1 82 1 2 145 1 2 48 1 0 68 1 0 120 chain 4100 chr6 171115067 + 97358965 97359031 MLT1C 463 - 24 91 205945 22 6 7 38 chain 5835 chr6 171115067 + 97363646 97363710 MER34A 573 + 9 73 186818 64 chain 33379 chr6 171115067 + 97363849 97364278 MER57A1 433 - 0 433 78601 149 11 13 233 1 3 35 chain 18552 chr6 171115067 + 97403845 97404150 THE1B 368 - 44 368 131352 46 7 2 33 35 45 26 1 0 113 0 15 44 chain 28872 chr6 171115067 + 97428687 97429081 THE1C 375 - 0 375 89576 26 1 0 143 0 3 17 21 0 186 chain 375005 chr6 171115067 + 97430557 97434889 L1P1 4361 - 20 4360 10919 12 3 2 22 1 0 154 1 0 93 0 1 598 1 0 165 0 1 35 0 1 555 14 14 107 0 4 193 0 4 392 0 1 717 1 0 179 0 1 1089 chain 36601 chr6 171115067 + 97434898 97435301 L1P1 4361 - 1030 1433 74096 403 chain 151694 chr6 171115067 + 97435301 97436982 L1PA4 6152 + 4462 6143 24374 1681 chain 8803 chr6 171115067 + 97448705 97449048 L1MC1 2226 + 1873 2181 166629 12 9 3 29 73 69 6 2 0 41 0 1 8 57 47 14 3 1 17 1 0 6 19 9 16 1 0 29 chain 22019 chr6 171115067 + 97462733 97463072 THE1D 372 + 0 332 120143 56 11 2 106 12 16 12 2 0 39 1 0 6 0 1 70 1 0 4 0 1 19 chain 9255 chr6 171115067 + 97468899 97469031 MLT2B4 540 - 10 140 164289 35 9 7 88 chain 25751 chr6 171115067 + 97470672 97471046 THE1D 372 - 0 372 101083 164 27 30 6 0 4 116 9 0 52 chain 4237 chr6 171115067 + 97486618 97486667 L1MA4 2864 + 2383 2432 204058 49 chain 29292 chr6 171115067 + 97505048 97505357 AluYg6 310 - 1 310 87616 309 chain 25023 chr6 171115067 + 97554892 97555182 AluYk4 311 + 6 296 104669 108 1 0 151 0 1 30 chain 316202 chr6 171115067 + 97603196 97607173 L1PA7 6471 - 7 4001 12754 9 1 0 410 20 0 183 0 3 239 0 3 59 0 4 80 0 5 14 5 6 254 0 4 155 7 1 86 6 4 51 0 5 90 7 2 128 0 4 1117 7 11 34 1 0 43 0 5 100 0 1 111 24 0 8 0 24 318 0 4 181 0 4 62 5 1 58 0 10 6 2 1 96 chain 4657 chr6 171115067 + 97688389 97688473 L1PB1 5432 - 6 86 198989 5 1 0 17 1 0 13 1 0 21 10 9 15 chain 12846 chr6 171115067 + 97744969 97745263 THE1B 368 - 67 368 148864 61 128 135 105 chain 14090 chr6 171115067 + 97777340 97777513 THE1B-int 1605 + 1425 1598 144260 173 chain 11848 chr6 171115067 + 97777520 97777886 THE1B 368 + 0 368 152840 19 2 0 28 75 85 35 41 47 18 1 0 4 15 14 27 8 0 41 14 12 38 chain 34027 chr6 171115067 + 97822604 97823011 L1PA7 6471 - 40 448 77583 294 0 1 113 chain 40211 chr6 171115067 + 97823335 97824083 L1PREC2 3366 - 326 1034 69016 30 6 4 35 135 104 13 3 0 4 1 0 43 2 1 54 2 0 38 0 4 76 3 0 26 29 28 248 chain 552866 chr6 171115067 + 97824416 97830577 L1PA3long 6157 - 0 6153 1083 831 1 0 1308 0 11 1294 5 0 319 0 4 556 0 1 49 1 0 592 0 3 198 23 3 984 chain 15954 chr6 171115067 + 97835409 97835593 L1PA5 6144 - 14 198 138504 184 chain 3194 chr6 171115067 + 97843674 97843710 L1MC4 1079 - 838 874 221031 36 chain 52180 chr6 171115067 + 97850049 97850620 L1PA4 6152 - 9 580 57511 571 chain 3140 chr6 171115067 + 97855676 97855712 MLT2B1 522 - 2 38 222190 36 chain 114449 chr6 171115067 + 97855728 97857452 L1PA8 5853 + 4419 5853 32959 591 0 1 459 302 0 52 0 1 41 1 0 45 5 20 53 1 0 5 19 18 35 2 1 19 2 1 92 chain 24410 chr6 171115067 + 97856791 97857080 L1PA5 6144 + 5855 6141 108027 146 0 1 104 4 0 35 chain 37662 chr6 171115067 + 97859856 97860343 MER75 514 + 11 511 72598 278 1 3 32 0 18 146 7 0 23 chain 29049 chr6 171115067 + 97884436 97884748 AluYb8 318 + 0 310 88766 132 2 0 178 chain 3535 chr6 171115067 + 97925227 97925266 L1MB2 1706 - 1512 1551 214779 39 chain 6620 chr6 171115067 + 97932367 97932449 L1PB2 3958 - 122 203 180303 61 1 0 20 chain 7354 chr6 171115067 + 97936144 97936593 L1MC 810 - 50 516 175060 12 5 6 12 1 0 61 83 85 37 215 231 5 1 0 17 chain 93269 chr6 171115067 + 97964881 97965963 L1PA4 6152 + 4300 6139 38576 7 0 3 41 0 4 557 4 754 473 chain 246403 chr6 171115067 + 98008022 98011533 L1PBa 3878 - 362 3787 16424 115 5 0 159 0 1 19 5 0 66 0 2 5 2 0 39 0 3 270 39 5 122 0 3 54 1 0 4 0 1 5 4 10 97 7 10 169 30 9 286 0 4 41 0 13 39 1 2 314 1 2 105 0 1 51 16 9 115 0 1 110 6 5 259 6 11 70 2 6 108 2 1 5 0 1 19 2 0 6 1 3 237 1 0 50 6 4 232 4 1 24 1 0 37 93 42 35 1 0 8 chain 23123 chr6 171115067 + 98028596 98028842 L1HS 6032 - 1 247 115026 246 chain 20531 chr6 171115067 + 98029389 98029639 L1PA6 6164 + 5913 6162 125539 96 2 1 152 chain 296110 chr6 171115067 + 98054661 98058962 L1PB1 5432 - 10 4252 13640 18 1 0 13 1 0 21 1 0 24 66 50 15 1 0 39 6 5 16 2 1 42 12 10 9 5 1 12 1 0 12 1 0 20 58 16 71 0 15 2 41 0 200 7 8 4 0 1 173 0 3 16 4 6 221 2 1 215 1 2 197 0 1 139 3 4 90 1 4 585 0 1 131 2 1 173 12 8 48 24 25 46 3 5 77 0 5 6 0 7 113 1 2 186 0 1 34 0 3 214 13 0 146 0 3 20 1 6 238 0 1 16 0 1 20 20 25 156 9 18 224 chain 7005 chr6 171115067 + 98059065 98059179 L1MA3 4352 + 3849 3965 177433 38 12 14 64 chain 15640 chr6 171115067 + 98059884 98060082 L1P3 4156 - 17 212 139465 24 2 1 7 2 0 163 chain 11376 chr6 171115067 + 98107734 98107923 MER30 238 - 0 184 154795 48 3 0 60 4 0 7 0 24 35 22 0 10 chain 109325 chr6 171115067 + 98183617 98184921 L1PA7 6471 - 2706 4016 34362 152 2 1 168 1 0 236 0 1 575 1 0 118 0 8 51 chain 220779 chr6 171115067 + 98184928 98187637 L1PA7 6471 + 3767 6470 17830 895 0 20 273 1 0 240 0 4 418 40 7 76 0 2 8 1 0 549 0 2 36 11 12 161 chain 30634 chr6 171115067 + 98196755 98197163 L1PA8 5853 - 4 406 83149 89 1 0 19 2 1 48 15 14 70 2 0 46 1 0 115 chain 122549 chr6 171115067 + 98216390 98218366 L1PA10 4194 - 51 1736 30207 4 1 0 22 4 1 28 0 5 7 1 0 8 22 20 99 0 4 333 7 7 13 1 0 279 0 1 20 0 1 284 0 1 124 0 1 120 0 12 15 1 3 48 327 20 13 1 0 24 1 0 4 1 0 164 chain 39813 chr6 171115067 + 98227363 98227823 LTR7 482 + 0 482 69607 15 6 0 36 3 0 195 0 31 205 chain 289783 chr6 171115067 + 98227825 98231487 HERVH-int 3825 + 0 3816 14034 532 5 0 38 1 0 9 2 1 9 4 0 14 49 1 15 1 0 12 3 0 25 42 0 42 13 32 49 1 0 444 15 0 462 4 31 37 2 0 792 0 18 428 128 341 484 chain 40664 chr6 171115067 + 98232747 98233201 LTR7 482 + 0 482 68346 51 3 0 195 0 31 205 chain 534925 chr6 171115067 + 98242519 98248966 L1PA4 6152 + 8 6152 3604 1218 1 0 6 0 1 1984 0 1 88 0 1 627 12 11 222 0 1 531 0 1 527 0 1 668 307 0 256 chain 72107 chr6 171115067 + 98285372 98286544 L1PB1 5432 + 4288 5424 47432 173 26 10 14 6 7 136 4 1 74 0 2 105 9 11 150 1 0 4 0 1 38 0 2 63 0 4 17 4 3 14 0 1 20 1 0 9 16 11 11 2 0 51 2 1 16 1 0 21 90 74 16 2 0 22 1 0 21 1 4 9 1 0 16 1 0 4 chain 5461 chr6 171115067 + 98321896 98321964 LTR37B 484 - 416 484 190406 68 chain 3120 chr6 171115067 + 98324838 98324871 MER51A 677 - 445 478 222553 33 chain 3315 chr6 171115067 + 98326262 98326310 L1MEc 1507 - 1010 1056 218671 5 2 0 41 chain 211593 chr6 171115067 + 98351989 98354377 L1PA5 6144 - 2 2395 18388 641 0 6 283 1 0 1463 chain 82503 chr6 171115067 + 98354491 98355465 L1P2 5180 + 1307 2282 42537 148 1 0 29 0 1 49 2 3 745 chain 25522 chr6 171115067 + 98376079 98376443 THE1B 368 + 0 368 102130 169 1 0 11 1 0 4 0 1 13 0 3 13 27 29 125 chain 26373 chr6 171115067 + 98386501 98386808 AluYf4 310 - 2 310 98523 99 1 2 207 chain 9312 chr6 171115067 + 98404785 98404892 L1PA6 6164 - 8 115 164002 107 chain 255860 chr6 171115067 + 98456019 98458914 L1PA4 6152 - 11 2906 15944 178 1 0 671 2 0 685 0 1 665 1 2 337 1 0 272 0 1 42 0 1 40 chain 311293 chr6 171115067 + 98507337 98510858 L1PA4 6152 - 9 3554 12952 6 0 3 659 0 1 166 0 4 1365 0 1 908 1 16 416 chain 13978 chr6 171115067 + 98514502 98514659 L1PA5 6144 - 4 161 144658 157 chain 24506 chr6 171115067 + 98514665 98514937 L1PA5 6144 + 5699 5971 107509 272 chain 548226 chr6 171115067 + 98530923 98537079 L1PA3long 6157 - 5 6157 1677 2263 1 2 851 3 5 569 7 8 992 9 0 22 1 0 148 1 0 122 0 3 121 1 0 517 1 2 527 chain 17842 chr6 171115067 + 98538394 98538642 L1PA8 5853 - 0 245 133270 91 3 2 19 2 1 52 2 1 8 1 0 11 0 1 59 chain 7110 chr6 171115067 + 98562369 98562482 MER96B 391 + 224 335 176688 46 1 0 14 12 10 5 0 1 35 chain 76399 chr6 171115067 + 98595312 98596245 L1PA7 6471 - 2 932 45265 12 3 0 56 5 1 439 0 1 343 0 3 75 chain 317159 chr6 171115067 + 98599323 98603627 L1PA8 5853 - 0 4315 12719 92 2 1 19 2 1 47 6 0 14 22 17 50 2 0 48 1 0 20 0 1 218 0 6 131 3 2 54 3 0 121 0 2 6 3 0 74 1 2 589 4 0 102 40 25 131 0 4 57 1 0 5 0 6 159 1 0 352 7 8 142 73 70 73 0 3 263 3 7 11 0 1 147 0 1 108 8 9 169 0 4 67 0 1 162 0 19 152 0 1 207 0 1 238 0 1 94 chain 33203 chr6 171115067 + 98614490 98614933 MLT2A1 477 + 0 477 78878 73 0 2 4 0 1 88 5 2 223 10 44 40 chain 453297 chr6 171115067 + 98614933 98620812 HERVL-int 5654 + 0 5645 8642 391 0 1 27 0 2 425 1 2 171 0 11 324 12 1 551 0 2 29 0 10 21 13 14 331 0 8 794 0 1 1223 0 35 164 0 2 26 0 3 98 0 1 29 3 4 249 307 0 398 0 4 101 0 1 191 chain 35802 chr6 171115067 + 98620821 98621259 MLT2A1 477 + 0 475 75129 169 4 1 213 0 40 52 chain 2839 chr6 171115067 + 98636296 98636341 MER131 149 + 36 81 228091 23 1 2 12 1 0 8 chain 36957 chr6 171115067 + 98655297 98655733 L1PA7 6471 + 6024 6461 73571 289 0 1 147 chain 9053 chr6 171115067 + 98655956 98656079 MER85 139 - 4 137 165300 35 1 11 87 chain 22876 chr6 171115067 + 98667427 98667692 AluYc 301 - 35 301 116207 144 0 1 121 chain 164543 chr6 171115067 + 98681624 98683559 L1PA6 6164 - 8 1967 22740 145 2 0 6 1 3 17 8 9 616 0 1 150 0 13 337 0 1 215 1 0 85 0 3 5 0 6 347 chain 30558 chr6 171115067 + 98691213 98691531 AluYb8 318 + 0 318 83289 318 chain 29466 chr6 171115067 + 98693587 98693893 AluYb9 318 - 12 318 86776 306 chain 14429 chr6 171115067 + 98707576 98707874 THE1D 372 + 0 324 143120 37 51 49 79 45 73 86 chain 175391 chr6 171115067 + 98775237 98777771 L1PB1 5432 - 17 2420 21411 11 1 0 13 1 0 21 1 0 24 25 20 18 24 12 16 2 1 43 1 0 15 16 15 36 20 14 10 1 0 8 1 0 23 9 0 12 99 0 129 0 1 165 0 10 60 0 7 102 0 1 168 0 4 627 0 4 92 7 0 337 13 0 25 1 0 4 2 3 126 0 1 31 2 0 15 0 1 58 1 2 118 chain 25141 chr6 171115067 + 98799420 98799689 L1PA4 6152 + 5874 6143 104060 269 chain 2387 chr6 171115067 + 98835544 98835586 L1PB3 3668 - 143 186 234334 17 6 7 19 chain 198656 chr6 171115067 + 98837257 98839468 L1PA3long 6157 - 0 2219 19294 687 0 8 18 0 1 65 1 0 1440 chain 277025 chr6 171115067 + 98839468 98842529 L1PA3long 6157 + 875 3936 14814 171 2 1 1463 6 7 1419 chain 6820 chr6 171115067 + 98851359 98851437 L1PA2 6032 + 5954 6032 178790 78 chain 61612 chr6 171115067 + 98859101 98859832 L1PA7 6471 - 3059 3838 52073 104 0 16 124 1 28 40 0 4 176 0 1 286 chain 249938 chr6 171115067 + 98859835 98862869 L1PA7 6471 + 3411 6469 16258 92 1 0 324 0 5 236 0 1 761 0 1 19 0 1 65 1 12 63 0 2 550 0 1 64 0 1 12 1 0 79 0 2 240 1 3 375 10 9 140 chain 556175 chr6 171115067 + 98864378 98870392 L1PA2 6032 + 4 6019 704 1552 0 1 4462 chain 102239 chr6 171115067 + 98871233 98872489 L1PA7 6471 - 10 1286 36206 85 8 0 7 0 8 567 0 1 93 5 7 76 0 3 85 4 11 112 0 6 199 1 2 14 chain 77957 chr6 171115067 + 98883583 98884772 L1MA2 4263 + 2583 3753 44544 57 7 5 52 5 0 42 3 4 20 4 5 28 6 5 24 32 22 63 5 4 242 5 6 201 0 3 154 1 0 4 0 1 42 8 6 11 19 16 62 1 0 91 chain 27118 chr6 171115067 + 98884773 98885127 THE1A 353 - 0 353 95874 233 12 11 109 chain 31398 chr6 171115067 + 98893403 98893826 MLT2A1 477 + 0 413 81819 163 14 11 29 1 2 178 0 2 8 10 0 20 chain 153412 chr6 171115067 + 98928615 98930383 L1PA5 6144 + 4359 6131 24170 767 0 1 215 1 4 29 0 1 423 7 6 326 chain 186088 chr6 171115067 + 98968143 98970273 L1PA5 6144 - 950 3083 20408 75 1 0 721 0 3 619 4 6 594 1 0 115 chain 6926 chr6 171115067 + 98970274 98970358 L1PA5 6144 + 5210 5294 177987 84 chain 75129 chr6 171115067 + 98970358 98971207 L1PA5 6144 + 5295 6144 45955 849 chain 25447 chr6 171115067 + 98980008 98980353 LTR18A 364 + 6 364 102468 214 21 34 110 chain 129267 chr6 171115067 + 99061004 99062476 L1PA5 6144 - 15 1494 28249 131 0 3 745 0 4 596 chain 24036 chr6 171115067 + 99062488 99062828 THE1B 368 - 12 366 110131 181 21 20 88 8 23 42 chain 3752 chr6 171115067 + 99064817 99064862 MER11C 1089 - 898 943 211113 45 chain 17560 chr6 171115067 + 99111276 99111503 L1PA8 5853 - 0 222 134098 93 1 0 19 2 1 51 2 0 9 1 0 49 chain 476397 chr6 171115067 + 99150935 99156196 L1HS 6032 + 3 5264 7847 1578 0 1 609 1 0 193 0 2 675 1 0 1693 1 0 510 chain 26911 chr6 171115067 + 99188858 99189226 THE1C 375 + 0 375 96593 38 0 8 79 3 0 78 3 6 141 1 0 25 chain 74968 chr6 171115067 + 99192877 99194024 L1PB2 3958 + 2716 3838 46026 19 11 12 32 7 8 125 17 16 162 15 8 74 18 4 133 2 0 51 0 3 14 5 0 62 2 0 13 3 0 46 0 1 45 2 0 34 5 7 32 1 0 64 1 0 22 0 4 46 2 0 21 5 4 37 0 3 8 0 1 11 chain 38892 chr6 171115067 + 99198968 99199431 L1PA7 6471 - 17 481 70879 145 1 2 317 chain 32937 chr6 171115067 + 99200184 99200576 L1PA7 6471 - 1 394 79310 12 0 2 136 1 0 243 chain 14354 chr6 171115067 + 99204419 99204811 MLT2D 439 - 65 438 143363 23 9 33 55 105 108 58 5 12 25 53 0 59 chain 4623 chr6 171115067 + 99209893 99209952 Tigger1 2417 + 2234 2292 199382 18 1 0 40 chain 48484 chr6 171115067 + 99210428 99211084 L1PA8A 6298 - 7 657 60124 78 4 6 22 8 7 89 13 15 179 15 6 248 chain 56286 chr6 171115067 + 99211084 99211819 L1P3 4156 + 3370 4105 54970 112 0 1 4 1 0 7 1 0 74 1 2 39 1 0 46 0 1 131 0 1 44 5 6 168 8 6 93 chain 24001 chr6 171115067 + 99244688 99245152 L1PB1 5432 + 4987 5424 110326 116 1 2 10 3 0 23 1 0 5 21 16 8 2 0 10 0 2 41 2 1 16 1 0 44 1 0 15 3 0 15 9 0 11 0 1 4 10 7 12 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 4204 chr6 171115067 + 99246253 99246329 L1MA4 2864 + 2727 2795 204484 10 6 0 28 3 1 29 chain 45600 chr6 171115067 + 99252896 99253628 L1PB1 5432 - 12 707 62403 29 1 0 21 1 0 24 2 0 14 8 5 19 26 13 15 1 0 44 1 0 14 3 4 51 2 0 8 7 3 9 1 0 13 1 0 16 35 21 287 0 6 79 chain 3301 chr6 171115067 + 99262013 99262052 MER5B 177 + 4 43 218953 39 chain 57009 chr6 171115067 + 99310107 99310738 L1PA4 6152 - 0 630 54525 21 1 0 609 chain 165697 chr6 171115067 + 99314440 99316243 L1PA3long 6157 + 4354 6157 22551 1005 0 1 780 1 0 17 chain 81304 chr6 171115067 + 99354071 99355024 L1PA7 6471 - 19 982 43042 135 1 0 23 0 5 413 0 1 254 1 4 119 0 2 7 chain 548157 chr6 171115067 + 99358565 99364694 L1PA3long 6157 + 0 6147 1685 971 0 2 120 0 3 1414 0 1 264 0 11 384 2 1 74 0 1 492 2 0 1566 0 4 590 1 0 249 chain 63283 chr6 171115067 + 99404593 99405335 L1PA7 6471 + 5726 6470 51332 410 0 1 183 7 8 142 chain 8413 chr6 171115067 + 99416672 99417087 MSTB2 466 - 11 446 168774 44 259 280 68 25 24 19 chain 29790 chr6 171115067 + 99450202 99450513 AluYb8 318 - 7 318 85503 311 chain 20312 chr6 171115067 + 99460481 99461030 Tigger3b 1229 + 890 1208 126200 58 84 24 80 184 13 143 chain 28943 chr6 171115067 + 99468387 99468843 MLT2A1 477 - 0 474 89264 20 1 0 4 24 11 12 0 43 63 1 0 51 31 15 85 1 5 25 0 2 138 chain 26177 chr6 171115067 + 99474360 99474715 THE1B 368 + 3 368 99289 41 6 21 96 13 12 19 4 0 176 chain 187580 chr6 171115067 + 99490343 99492433 L1P1 4361 - 673 2768 20284 177 0 1 345 1 0 666 0 1 653 1 2 5 0 3 242 chain 39006 chr6 171115067 + 99503812 99504333 MLT2A2 560 + 0 560 70735 94 3 0 86 1 0 130 8 40 52 0 11 147 chain 53525 chr6 171115067 + 99544738 99545537 L1PB3 3668 + 2479 3286 56662 117 51 54 17 5 6 24 8 9 123 0 1 158 4 6 11 3 0 38 0 1 41 2 1 57 0 3 140 chain 26342 chr6 171115067 + 99575991 99576265 AluYd8 298 + 0 274 98644 274 chain 134296 chr6 171115067 + 99589218 99590754 SVA_D 2077 + 0 2074 27153 542 0 40 177 45 5 153 0 538 619 chain 3662 chr6 171115067 + 99609119 99609270 LTR41 747 + 551 706 212531 16 97 101 38 chain 32642 chr6 171115067 + 99642055 99642526 MER1A 529 + 49 529 79777 43 0 4 76 26 27 95 0 1 104 3 0 54 12 18 58 chain 427844 chr6 171115067 + 99646335 99651718 L1PA8A 6298 - 8 5425 9355 97 7 0 6 1 8 207 4 0 402 0 2 78 2 1 488 0 22 362 0 4 406 0 1 78 0 1 242 1 6 193 0 4 126 0 22 395 0 1 165 0 2 398 17 10 21 14 7 18 1 2 5 1 0 190 0 1 16 0 5 383 14 12 671 3 2 16 10 14 14 2 3 36 16 6 15 17 4 18 0 4 227 chain 554895 chr6 171115067 + 99652163 99658312 L1PA3long 6157 + 4 6155 836 2894 1 0 272 1 2 2308 0 1 403 0 1 270 chain 92594 chr6 171115067 + 99660699 99662257 L1PA16 3655 + 2116 3619 38787 117 1 0 229 12 11 16 1 2 97 0 1 82 8 7 91 2 1 133 46 35 53 7 6 16 9 3 185 1 0 17 85 73 119 0 1 83 68 71 12 3 0 13 24 6 7 5 0 16 chain 26520 chr6 171115067 + 99699921 99700207 AluY 311 + 2 289 97970 130 0 1 156 chain 100592 chr6 171115067 + 99701183 99702629 HUERS-P2-int 2744 + 1253 2738 36604 132 1 2 168 0 1 17 5 2 354 0 17 27 0 8 99 1 8 164 35 63 60 11 10 55 1 0 72 2 0 32 4 0 35 0 3 9 1 0 7 28 25 33 3 0 4 1 0 24 6 5 9 2 0 5 2 0 12 2 0 23 chain 3453 chr6 171115067 + 99706613 99706654 MLT1A0 366 + 255 296 216160 41 chain 47964 chr6 171115067 + 99708722 99709868 LTR12_ 688 - 0 687 60516 92 562 0 64 0 103 428 chain 46039 chr6 171115067 + 99708830 99709339 L1PA4 6152 + 5635 6144 62004 509 chain 394219 chr6 171115067 + 99711334 99716037 HERV9-int 5642 - 818 5642 10311 305 0 3 509 0 32 1002 0 1 90 0 2 245 6 0 540 0 3 985 3 0 80 69 166 70 1 0 697 8 1 93 chain 59363 chr6 171115067 + 99716076 99716921 LTR12 884 - 11 884 53194 297 103 0 143 1 0 4 0 1 52 2 0 48 0 132 142 0 1 53 chain 9696 chr6 171115067 + 99800964 99801156 MER30 238 - 0 237 162102 45 1 4 20 14 20 11 2 30 10 9 0 64 2 19 14 chain 6633 chr6 171115067 + 99801568 99801652 MER5A1 166 - 40 124 180222 84 chain 16502 chr6 171115067 + 99816447 99816648 L1PA7 6471 + 6265 6466 136910 201 chain 9000 chr6 171115067 + 99845333 99845561 Tigger3a 397 - 34 343 165598 19 17 17 93 77 158 22 chain 72185 chr6 171115067 + 99877246 99878203 LTR5_Hs 974 + 0 974 47384 289 0 1 177 0 1 174 2 0 5 8 9 163 8 15 16 26 35 89 chain 13080 chr6 171115067 + 99883881 99884091 L1PA7 6471 - 2 214 147918 10 2 0 6 2 1 12 18 21 104 1 2 14 1 2 40 chain 492003 chr6 171115067 + 99895400 99901060 L1PA5 6144 + 462 6144 7271 12 5 1 473 0 4 492 0 4 82 0 11 296 0 4 259 0 3 273 0 2 90 16 1 221 0 3 465 3 0 951 0 1 231 0 4 312 0 1 562 0 1 76 0 4 76 1 0 749 1 4 14 chain 82701 chr6 171115067 + 99904307 99905349 MER11C 1089 + 3 1064 42457 243 0 9 62 0 4 65 1 0 47 1 2 122 0 1 111 0 1 17 1 5 7 1 0 38 0 1 127 0 1 54 1 0 144 chain 13204 chr6 171115067 + 99926432 99926602 L1PA16 3655 + 3290 3456 147452 148 4 0 18 chain 29315 chr6 171115067 + 99931432 99931742 AluYb8 318 + 0 310 87463 310 chain 7926 chr6 171115067 + 99973972 99974079 HY1 111 + 0 111 171464 16 1 0 22 1 3 21 0 3 46 chain 5076 chr6 171115067 + 100004215 100004278 L1MB2 1706 - 216 281 194332 8 0 2 55 chain 6641 chr6 171115067 + 100005295 100005379 MLT1B 390 + 17 99 180156 8 2 0 74 chain 10217 chr6 171115067 + 100021160 100021306 L1MA3 4352 - 26 168 159525 12 2 0 26 1 0 5 2 1 24 1 0 61 0 1 12 chain 22937 chr6 171115067 + 100031803 100032081 AluSc 308 + 5 283 115918 278 chain 12013 chr6 171115067 + 100032449 100033699 Tigger1 2417 - 204 881 152144 133 0 2 5 3 0 9 1046 475 16 10 9 28 chain 25341 chr6 171115067 + 100069924 100070258 THE1A 353 + 0 341 103011 19 5 6 86 1 0 50 0 1 40 2 0 114 0 8 17 chain 137194 chr6 171115067 + 100074331 100075986 L1PA7 6471 + 4783 6469 26604 172 1 0 241 2 1 36 0 33 217 0 3 135 2 0 52 4 1 170 0 1 291 0 1 332 chain 23617 chr6 171115067 + 100084614 100084912 THE1B-int 1605 - 0 310 112490 9 1 2 51 0 9 16 0 2 221 chain 8017 chr6 171115067 + 100090115 100090205 HY1 111 - 1 91 170947 90 chain 132331 chr6 171115067 + 100097411 100098917 SVA_D 2077 - 4 2035 27555 620 5 361 43 0 1 10 1 4 32 0 86 153 0 40 73 0 40 394 1 0 174 chain 134375 chr6 171115067 + 100101461 100103033 L1PA5 6144 - 46 1624 27137 101 1 2 159 6 7 107 0 1 648 6 7 284 0 2 260 chain 289140 chr6 171115067 + 100103034 100106283 L1PA5 6144 + 1278 4529 14073 923 1 0 105 1 0 755 0 4 136 0 1 307 1 0 1020 chain 534463 chr6 171115067 + 100118679 100124815 L1PA5 6144 - 1 6140 3657 153 0 1 131 0 1 51 0 1 207 0 1 301 1 5 442 0 1 196 1 0 311 0 4 2031 2 0 106 1 0 22 1 2 109 12 3 1035 1 2 55 0 1 967 chain 105591 chr6 171115067 + 100139351 100140534 L1PA4 6152 + 4942 6141 35353 285 0 1 537 0 15 361 chain 70174 chr6 171115067 + 100141446 100142259 L1PA6 6164 + 5339 6162 48318 258 4 14 551 chain 500247 chr6 171115067 + 100150005 100155986 L1PA6 6164 + 0 6156 6822 237 0 2 59 0 1 15 6 5 154 5 8 36 0 2 48 1 0 1533 0 2 223 13 0 24 9 0 249 6 27 558 1 2 4 0 1 260 0 162 750 0 4 147 0 2 163 10 11 626 3 0 547 0 1 54 5 4 235 chain 5225 chr6 171115067 + 100160124 100160213 LFSINE_Vert 271 - 176 257 192782 58 13 6 12 1 0 5 chain 23097 chr6 171115067 + 100168934 100169255 L1MA1 4479 - 3766 4091 115158 50 23 27 248 chain 20164 chr6 171115067 + 100169650 100169885 THE1D-int 1627 + 0 235 126631 235 chain 54459 chr6 171115067 + 100177971 100178582 L1PA4 6152 - 1 612 56064 611 chain 76519 chr6 171115067 + 100182109 100183048 L1PA7 6471 - 2 936 45202 14 5 1 151 0 1 4 1 0 506 0 1 88 1 0 89 2 1 78 chain 87725 chr6 171115067 + 100211936 100212931 L1PA5 6144 - 12 1010 40476 650 0 2 278 0 1 67 chain 11762 chr6 171115067 + 100216073 100216240 Tigger1a_Art 216 - 44 216 153211 69 4 9 94 chain 11124 chr6 171115067 + 100219243 100219610 MLT1B 390 - 0 368 155716 87 216 216 60 0 1 4 chain 7282 chr6 171115067 + 100223316 100223414 L1PREC2 3366 - 2337 2436 175574 81 4 5 13 chain 7154 chr6 171115067 + 100235147 100235230 MER20 218 - 40 123 176374 83 chain 5731 chr6 171115067 + 100261471 100261684 MLT1A0 366 + 119 346 187830 32 11 15 7 3 0 17 26 40 36 66 65 15 chain 72202 chr6 171115067 + 100263020 100263836 L1PA5 6144 + 5328 6142 47375 269 0 1 259 0 1 277 4 0 7 chain 553049 chr6 171115067 + 100271473 100277470 L1PA2 6032 + 20 6030 1062 3045 0 13 2952 chain 3740 chr6 171115067 + 100301289 100301402 MER63A 208 - 3 114 211336 26 57 55 30 chain 322959 chr6 171115067 + 100303780 100308140 L1P2 5180 + 744 5075 12484 41 5 20 56 10 0 8 11 21 33 0 1 28 1 0 4 11 12 53 23 24 4 1 0 76 0 4 188 12 13 385 0 1 236 1 0 341 98 28 8 0 1 198 0 1 257 0 4 425 11 9 689 5 6 81 0 23 9 18 0 207 1 0 6 5 6 63 0 1 36 1 9 129 1 3 504 1 0 79 chain 36607 chr6 171115067 + 100308149 100308615 L1P3 4156 - 609 1081 74088 329 19 25 118 chain 4736 chr6 171115067 + 100312621 100312681 MER53 195 + 0 60 198096 60 chain 12923 chr6 171115067 + 100330589 100330940 L1MA8 2339 - 88 405 148538 11 0 2 40 15 9 24 119 92 64 1 0 43 10 8 24 chain 32249 chr6 171115067 + 100347966 100348336 L1PA4 6152 + 5780 6151 80442 193 5 6 172 chain 5528 chr6 171115067 + 100362472 100362542 MER5A1 166 + 8 78 189767 70 chain 238917 chr6 171115067 + 100370281 100373670 L1MA2 4263 - 847 4230 16836 12 1 0 31 0 7 7 0 1 112 10 11 4 1 0 77 2 0 242 0 1 209 0 1 4 5 4 49 1 0 111 6 1 127 0 1 63 13 12 143 24 1 18 16 11 190 0 5 95 42 48 236 49 47 39 0 2 7 6 4 79 0 4 83 0 1 119 0 3 145 7 0 6 0 8 343 2 0 70 0 6 11 0 1 121 1 0 118 0 3 110 1 0 89 2 0 43 1 0 4 3 4 79 chain 554018 chr6 171115067 + 100373712 100379864 L1PA3long 6157 - 0 6157 947 779 1 0 363 0 1 3591 0 1 56 1 0 124 1 0 279 0 4 557 0 2 400 chain 30170 chr6 171115067 + 100391213 100391539 L1PA3long 6157 - 0 326 84276 326 chain 69366 chr6 171115067 + 100408163 100408983 L1PA6 6164 + 4459 5281 48657 345 0 2 475 chain 28504 chr6 171115067 + 100408984 100409366 L1PA6 6164 + 5289 5788 91172 29 0 1 54 42 158 257 chain 30862 chr6 171115067 + 100409366 100409743 L1PA6 6164 + 5789 6162 82746 367 4 0 6 chain 537968 chr6 171115067 + 100417452 100423592 L1PA4 6152 - 7 6146 3154 125 0 6 121 0 1 168 0 2 443 1 0 792 0 2 1798 2 1 582 0 3 255 0 1 534 1 2 72 1 0 272 6 10 119 23 6 254 1 0 570 chain 12490 chr6 171115067 + 100427284 100427552 MER33 330 + 17 291 150290 79 99 104 54 0 1 36 chain 12930 chr6 171115067 + 100432143 100432292 L1PA3long 6157 - 5 160 148504 138 0 6 11 chain 25008 chr6 171115067 + 100439399 100439713 AluY 311 + 0 311 104742 4 1 0 22 1 0 106 0 1 108 2 0 70 chain 4051 chr6 171115067 + 100452994 100453045 L1MD3 1191 + 95 146 206622 51 chain 29295 chr6 171115067 + 100474403 100474710 AluYf4 310 - 3 310 87599 307 chain 107735 chr6 171115067 + 100476496 100477705 L1HS 6032 - 3752 4961 34794 1209 chain 264321 chr6 171115067 + 100477708 100480639 L1PA3long 6157 + 2400 6157 15467 320 0 831 1832 1 0 314 4 0 460 chain 65747 chr6 171115067 + 100487546 100488388 L1P2 5180 + 1341 2183 50217 413 1 2 71 11 10 346 chain 324249 chr6 171115067 + 100488472 100492755 L1PA7 6471 + 2488 6459 12430 76 4 12 56 17 0 96 8 0 50 0 1 201 6 4 50 0 1 61 0 4 297 319 0 99 0 1 299 9 1 39 1 0 172 0 1 66 5 6 109 0 13 71 1 0 350 0 1 43 0 4 154 0 4 657 6 9 125 1 0 178 0 1 160 0 1 167 0 1 178 1 2 5 2 0 6 0 1 138 chain 42583 chr6 171115067 + 100495821 100496290 L1PA4 6152 - 162 631 65920 469 chain 13931 chr6 171115067 + 100496291 100496450 L1PA4 6152 + 5984 6143 144815 159 chain 13127 chr6 171115067 + 100497875 100498075 L1PA8 5853 - 0 196 147734 93 1 0 17 1 0 36 31 29 21 chain 192810 chr6 171115067 + 100517473 100519608 L1PA3long 6157 - 0 2131 19786 450 6 0 623 0 1 899 0 1 157 chain 67114 chr6 171115067 + 100519608 100520351 L1PA3long 6157 + 3275 4018 49562 743 chain 29427 chr6 171115067 + 100534431 100534739 AluYk12 309 + 0 308 86948 308 chain 19698 chr6 171115067 + 100566362 100566713 MER61A 341 - 7 341 128109 41 8 9 4 1 0 30 14 15 20 48 30 185 chain 29047 chr6 171115067 + 100643288 100643653 L1PA5 6144 + 5780 6144 88771 92 1 0 109 15 8 11 0 7 137 chain 554722 chr6 171115067 + 100644337 100650366 L1PA2 6032 + 2 6032 858 315 2 1 4889 0 1 59 0 1 764 chain 62423 chr6 171115067 + 100670033 100670831 L1PA8 5853 - 0 793 51712 6 0 1 4 1 0 82 1 0 19 2 1 45 2 1 15 1 0 71 2 0 44 1 0 351 4 7 4 1 0 142 chain 28227 chr6 171115067 + 100671964 100672318 L1PA7 6471 + 6107 6461 92203 289 3 4 55 1 0 6 chain 14013 chr6 171115067 + 100709426 100709743 L1MB2 1706 - 11 329 144535 84 1 0 9 44 29 36 30 47 25 2 0 44 26 28 16 chain 29266 chr6 171115067 + 100720591 100720930 L1PA5 6144 + 5804 6143 87713 339 chain 50098 chr6 171115067 + 100742935 100743515 L1PA3long 6157 - 1 581 58945 145 12 11 90 0 1 333 chain 28386 chr6 171115067 + 100751386 100751856 L1PB2 3958 - 124 595 91639 7 1 0 49 8 7 16 2 0 74 1 0 52 0 5 6 1 0 50 24 23 107 3 1 10 19 27 29 3 0 8 chain 3871 chr6 171115067 + 100779575 100779664 MIR 256 + 93 186 209280 42 34 38 13 chain 5464 chr6 171115067 + 100788293 100788356 L1ME1 1623 + 1142 1205 190368 63 chain 3760 chr6 171115067 + 100795361 100795404 L1MA4 2864 - 55 98 210958 43 chain 549997 chr6 171115067 + 100802579 100808601 L1PA2 6032 + 0 6031 1447 74 0 1 105 0 1 75 1 0 480 1 0 385 1 0 1143 2 6 2246 0 5 236 0 1 1273 chain 84461 chr6 171115067 + 100816630 100817547 L1PA3long 6157 - 0 920 41734 5 0 2 817 0 1 95 chain 7333 chr6 171115067 + 100825086 100825168 L1PA2 6032 + 5950 6032 175200 82 chain 9921 chr6 171115067 + 100856995 100857105 L1PA4 6152 - 14 124 160972 110 chain 44917 chr6 171115067 + 100863571 100864137 LTR19B 566 + 0 566 63157 296 6 7 186 5 7 21 10 7 42 chain 28804 chr6 171115067 + 100872835 100873189 THE1A 353 + 0 353 89874 110 1 0 243 chain 51371 chr6 171115067 + 100885803 100886623 L1PB2 3958 + 3032 3838 58049 73 4 6 122 0 2 72 2 0 21 34 33 13 4 0 65 2 0 10 8 4 92 28 27 45 1 0 62 1 0 74 2 0 21 2 1 18 0 1 44 chain 21980 chr6 171115067 + 100943300 100943693 THE1D 372 - 0 372 120316 104 8 12 45 43 45 91 19 0 10 16 8 57 chain 140116 chr6 171115067 + 100944985 100946948 L1PA7 6471 - 5 1689 26127 8 0 2 148 2 1 175 0 1 286 306 0 80 1 2 142 1 0 269 0 21 123 0 1 94 0 4 130 1 0 197 chain 110648 chr6 171115067 + 100946948 100948311 L1P2 5180 + 1483 2843 33999 139 0 1 703 7 0 268 2 1 191 0 4 53 chain 5258 chr6 171115067 + 100976450 100976514 MER41B 635 + 482 546 192433 64 chain 550413 chr6 171115067 + 101028475 101034610 L1PA3long 6157 - 15 6157 1390 323 0 1 440 1 0 635 2 0 1094 0 1 310 1 0 378 0 1 661 0 1 88 0 2 26 0 1 329 0 4 1847 chain 14974 chr6 171115067 + 101069237 101069547 L1PA11 4918 + 4291 4578 141399 40 2 1 56 9 8 11 2 0 68 2 0 14 1 0 13 27 18 10 13 9 10 6 5 13 2 0 11 chain 21261 chr6 171115067 + 101071761 101072003 L1PA4 6152 + 5910 6152 122986 242 chain 19805 chr6 171115067 + 101089197 101089424 L1PA4 6152 - 623 850 127797 227 chain 52594 chr6 171115067 + 101089425 101090036 L1PA4 6152 + 5526 6138 57239 287 5 6 319 chain 11584 chr6 171115067 + 101118179 101118436 MER2 342 - 13 262 153951 17 44 33 46 13 14 53 14 17 38 4 3 28 chain 14097 chr6 171115067 + 101137995 101138236 MER2 342 - 75 324 144231 67 6 13 82 7 9 16 2 0 22 12 13 27 chain 111924 chr6 171115067 + 101147396 101148889 THE1B-int 1605 + 0 1605 33687 53 4 5 175 0 11 188 0 25 309 0 49 134 34 57 234 1 0 136 1 2 25 0 1 71 1 2 122 0 1 5 chain 19130 chr6 171115067 + 101149152 101149411 THE1B 368 + 110 368 129744 41 0 2 19 3 2 26 2 0 168 chain 42763 chr6 171115067 + 101169699 101170255 L1P4 1494 - 184 738 65706 359 1 0 143 1 0 52 chain 17564 chr6 171115067 + 101184137 101184353 AluSc5 308 + 39 257 134086 91 0 1 42 4 5 79 chain 181524 chr6 171115067 + 101206156 101208402 L1PA8A 6298 - 17 2356 20843 132 20 1 210 0 1 103 5 0 97 0 1 245 0 3 436 0 7 33 0 76 363 0 4 70 5 4 139 1 4 279 0 23 108 chain 2506 chr6 171115067 + 101212677 101212743 MLT1A 405 - 353 402 233047 21 4 0 8 17 4 16 chain 4095 chr6 171115067 + 101252303 101252349 L1PA16 3655 - 876 922 206012 46 chain 32873 chr6 171115067 + 101266792 101267197 L1PA6 6164 + 5755 6162 79413 76 0 1 171 8 8 136 1 0 4 0 2 9 chain 35520 chr6 171115067 + 101273362 101273794 L1P2 5180 - 3409 3842 75522 121 0 1 311 chain 104662 chr6 171115067 + 101276317 101277629 LTR12C 1709 - 0 1707 35574 481 15 8 74 0 5 23 4 2 4 1 0 44 0 360 324 4 47 144 4 1 190 chain 6269 chr6 171115067 + 101312640 101312731 MLT1B 390 - 44 136 183007 43 4 5 44 chain 17091 chr6 171115067 + 101335349 101335718 L1PB1 5432 + 5094 5430 135345 9 1 2 9 3 0 21 1 0 12 1 0 11 5 1 8 2 0 55 17 14 44 1 0 12 15 5 28 11 9 12 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 19615 chr6 171115067 + 101341232 101341450 L1PA2 6032 - 249 467 128346 218 chain 22428 chr6 171115067 + 101341450 101341697 L1PA2 6032 + 5785 6031 118348 234 1 0 12 chain 79766 chr6 171115067 + 101344822 101345928 MER61-int 3695 + 1611 2723 43701 56 0 1 68 2 0 87 11 13 193 13 8 73 8 11 17 2 1 13 5 17 414 9 6 26 2 0 8 0 1 43 0 1 8 2 1 46 chain 47207 chr6 171115067 + 101355000 101355576 L1PA7 6471 + 5883 6462 61037 254 0 2 116 0 1 206 chain 463300 chr6 171115067 + 101356002 101362130 L1PA4 6152 - 0 6131 8284 113 0 1 669 1 2 56 1 5 1082 1 2 1769 0 2 631 1 2 359 1 6 81 46 47 96 95 85 185 25 0 117 0 17 149 34 37 5 3 0 41 1 7 5 7 0 25 17 21 5 3 0 60 8 0 35 199 199 18 3 2 74 8 22 99 chain 52433 chr6 171115067 + 101377921 101378847 L1PA15 4387 - 45 1892 57333 13 10 13 29 11 27 43 15 10 22 6 5 50 1 0 14 17 16 89 2 1 77 1 0 41 3 1 57 25 21 65 0 3 26 43 45 62 0 1 10 11 12 112 0 911 71 chain 227818 chr6 171115067 + 101388090 101390878 L1PA6 6164 - 2 2811 17435 148 1 16 248 1 0 123 0 1 191 41 41 76 0 2 148 1 6 1465 1 0 3 1 0 116 0 1 224 chain 260813 chr6 171115067 + 101395494 101399749 HERVK22-int 3844 + 0 3844 15651 43 3 0 698 0 1 90 0 1 403 0 5 327 1 5 464 1 21 21 0 3 322 0 1 165 4 240 186 0 1 50 2 1 59 38 35 36 1 0 20 2 0 33 13 9 7 1 0 45 2 0 14 26 15 10 2 0 6 15 9 10 1 0 7 66 48 20 11 6 28 1 0 5 814 193 79 16 15 87 chain 504659 chr6 171115067 + 101416602 101423397 L1PA6 6164 + 4 6162 6561 233 0 2 280 0 2 46 1 0 11 0 16 427 1 0 282 0 1 61 12 11 125 0 4 185 0 1 475 14 2 166 4 0 57 672 0 199 25 12 477 0 3 1280 0 4 294 15 33 622 1 0 268 0 1 59 0 1 354 1 16 148 chain 52233 chr6 171115067 + 101418991 101419641 L1PA5 6144 + 5498 6139 57474 40 9 1 272 2 1 169 6 1 8 0 5 144 chain 54026 chr6 171115067 + 101439250 101439886 L1PA7 6471 - 900 1536 56344 238 3 2 133 0 1 262 chain 70346 chr6 171115067 + 101439911 101440754 L1PA7 6471 + 5604 6449 48242 12 1 4 19 1 0 126 1 0 520 0 1 163 chain 47942 chr6 171115067 + 101475842 101476407 L1PA5 6144 - 6 572 60530 136 1 2 130 1 0 271 5 6 21 chain 249070 chr6 171115067 + 101476407 101479331 L1P1 4361 - 1398 4357 16306 612 0 1 336 0 7 579 2 1 310 6 7 216 0 27 863 chain 3458 chr6 171115067 + 101493868 101493908 MSTA 426 - 65 105 216015 40 chain 319620 chr6 171115067 + 101494065 101500000 L1PA7 6471 - 11 3974 12610 211 0 3 107 0 1 171 0 1 345 1 0 642 1994 0 202 0 3 167 0 1 336 0 1 254 0 6 12 7 1 254 0 1 103 0 1 30 7 8 46 0 4 62 0 1 801 1 6 46 8 9 111 1 0 16 chain 64795 chr6 171115067 + 101495776 101496861 L1PA7 6471 - 3 801 50659 9 2 0 151 6 5 157 284 0 476 chain 56894 chr6 171115067 + 101496861 101497535 L1PA7 6471 - 816 1492 54599 250 0 1 323 0 1 101 chain 194190 chr6 171115067 + 101500000 101502481 L1P3 4156 - 1662 4153 19657 462 1 0 310 0 2 123 0 3 197 0 3 103 20 22 282 8 9 435 0 2 221 1 0 58 21 20 239 chain 498948 chr6 171115067 + 101509884 101517146 L1PA6 6164 + 0 6161 6899 449 8 0 120 1 0 218 0 17 650 3 4 92 16 18 154 1 0 62 0 1 27 0 1 1858 1155 26 291 2 0 155 0 5 656 3 21 64 6 10 409 0 4 180 0 1 204 6 0 134 0 1 320 9 0 9 chain 13862 chr6 171115067 + 101514041 101514359 LTR12C 1709 - 513 799 145029 34 1 85 14 118 0 66 4 6 81 chain 5068 chr6 171115067 + 101514099 101514155 LTR12C 1709 - 656 712 194448 56 chain 27291 chr6 171115067 + 101518608 101518951 LTR12C 1709 + 773 1203 95300 64 1 0 155 0 41 40 0 47 83 chain 11594 chr6 171115067 + 101518952 101519092 LTR12C 1709 + 837 977 96870 140 chain 60718 chr6 171115067 + 101546360 101547095 L1PA7 6471 - 1 738 52460 83 0 1 75 5 6 572 chain 49961 chr6 171115067 + 101547095 101547687 L1PA7 6471 + 5119 5709 59051 301 1 0 200 2 1 88 chain 3275 chr6 171115067 + 101570885 101570923 MIR 256 - 128 166 219436 38 chain 10849 chr6 171115067 + 101581076 101581422 MLT1A0 366 + 9 349 156789 34 12 0 36 44 52 33 130 128 57 chain 70142 chr6 171115067 + 101590797 101591858 L1PA15 4387 - 31 1074 48330 27 5 2 11 2 0 44 8 5 44 11 10 7 4 0 20 18 17 41 1 0 23 6 5 32 1 0 4 16 24 100 1 0 7 1 0 43 3 1 60 4 0 9 9 7 332 0 1 167 chain 538326 chr6 171115067 + 101600128 101606144 L1PA3long 6157 - 1 6157 3099 1802 0 4 272 0 1 428 0 1 385 2 1 80 6 5 2055 0 1 123 0 6 88 0 128 623 0 1 152 chain 4400 chr6 171115067 + 101618294 101618528 L1M1 2793 - 133 367 201925 32 1 0 18 159 160 24 chain 80504 chr6 171115067 + 101618528 101619669 MER11A 1151 - 0 1149 43388 230 0 1 37 16 21 26 25 1 42 50 0 24 14 0 79 5 6 145 0 1 94 0 1 149 4 0 111 13 5 24 0 99 53 chain 169269 chr6 171115067 + 101633930 101635909 L1PA3long 6157 - 28 1916 22145 112 97 0 163 0 1 4 0 5 1603 chain 524601 chr6 171115067 + 101636036 101642478 L1PA5 6144 + 5 6140 4716 50 0 13 793 0 1 307 9 0 66 7 6 569 0 2 501 0 1 850 2 1 118 1 2 390 1 2 166 1 0 1150 0 9 524 0 1 283 0 1 11 1 0 109 324 0 209 chain 124960 chr6 171115067 + 101661515 101662884 L1PA2 6032 - 15 1384 29402 1369 chain 260897 chr6 171115067 + 101693854 101696764 L1PA4 6152 - 0 2916 15648 850 0 4 1524 0 1 183 1 2 352 chain 201824 chr6 171115067 + 101706216 101708912 Charlie3 2679 + 19 2679 19083 15 3 2 21 1 8 259 0 4 63 0 1 5 0 4 35 2 7 181 0 1 308 2 0 491 3 5 92 50 0 199 1 9 52 1 2 353 9 6 334 0 4 117 37 20 62 chain 8627 chr6 171115067 + 101765964 101766155 L1MC3 1789 - 1320 1513 167603 23 54 59 82 9 6 23 chain 187210 chr6 171115067 + 101783186 101785927 L1MA1 4479 - 317 3017 20315 11 1 0 9 1 0 35 3 1 18 2 0 10 1 0 126 9 5 88 1 0 12 3 1 20 1 0 71 1 0 16 10 8 17 1 0 104 0 1 98 25 22 89 14 11 59 9 7 60 4 0 12 1 0 74 4 0 21 3 0 60 7 6 105 4 2 25 1 0 20 0 3 63 2 0 69 1 0 32 2 0 103 2 1 65 1 0 15 40 37 26 5 8 98 10 12 235 1 0 4 0 1 14 0 1 134 0 1 337 0 1 216 chain 22317 chr6 171115067 + 101864854 101865205 THE1B 368 - 5 368 118844 119 3 2 12 54 67 163 chain 33268 chr6 171115067 + 101872055 101872430 L1PA4 6152 - 9 384 78776 375 chain 52125 chr6 171115067 + 101872450 101873146 L1PA4 6152 - 6 604 57542 151 0 1 303 100 1 142 chain 4849 chr6 171115067 + 101884687 101884742 L1PA5 6144 - 16 71 196790 55 chain 102519 chr6 171115067 + 101945760 101946888 L1PA3long 6157 - 15 1143 36127 1128 chain 13490 chr6 171115067 + 101946888 101947031 L1PA3long 6157 + 4882 5025 146391 143 chain 70509 chr6 171115067 + 101962815 101963961 L1PB1 5432 - 29 1122 48158 12 1 0 21 3 2 22 2 0 14 11 8 13 27 15 15 1 0 44 1 0 16 2 1 12 1 0 41 2 0 6 84 58 50 16 16 219 14 15 182 9 6 305 chain 43352 chr6 171115067 + 101963961 101964501 L1PB1 5432 + 3814 4352 64892 334 0 1 20 1 0 150 3 1 32 chain 28977 chr6 171115067 + 101994695 101995006 AluYa5 310 - 0 310 89102 178 1 0 132 chain 117968 chr6 171115067 + 101995205 101996533 L1PA4 6152 - 9 1337 31816 1328 chain 22913 chr6 171115067 + 102029946 102030243 L1PA7 6471 - 1 295 116044 154 17 9 12 0 5 114 chain 5132 chr6 171115067 + 102036643 102036706 L1PA5 6144 + 6075 6138 193758 63 chain 18418 chr6 171115067 + 102039732 102040104 MSTB 430 + 0 412 131717 83 1 2 35 40 38 14 0 3 13 28 62 37 14 18 52 2 0 6 1 3 46 chain 97692 chr6 171115067 + 102083218 102084382 L1PA7 6471 + 5298 6467 37369 325 0 4 420 5 7 77 2 0 149 0 1 186 chain 300381 chr6 171115067 + 102105939 102109799 L1PA7 6471 - 8 6470 13401 154 10 11 14 1 0 4 0 2 389 0 27 30 0 1 210 2 0 5 5 7 210 1 13 87 0 1 102 1 0 17 15 17 28 0 1 121 0 2539 7 0 5 282 1 2 189 1 0 545 1 2 607 13 14 14 0 1 378 15 16 85 7 8 243 1 9 65 chain 6279 chr6 171115067 + 102129002 102129128 L1MA3 4352 - 0 117 182949 22 9 5 9 1 0 28 8 6 24 2 0 23 chain 13867 chr6 171115067 + 102164467 102164635 L1PA5 6144 + 5976 6144 145012 168 chain 120429 chr6 171115067 + 102183622 102185176 THE1B-int 1605 - 0 1605 30895 251 1 0 54 0 7 260 1 0 4 0 1 533 4 0 39 1 41 141 0 8 221 11 12 33 chain 18365 chr6 171115067 + 102191713 102192828 L1PB1 5432 - 10 402 131895 18 16 14 20 1 0 20 335 24 17 24 13 15 1 0 44 1 0 16 2 1 52 10 0 9 5 1 14 1 0 8 1 0 22 390 11 73 chain 27544 chr6 171115067 + 102207746 102208043 AluYb8 318 - 9 318 94521 87 0 12 210 chain 3270 chr6 171115067 + 102219339 102219376 MER85 139 - 0 37 219596 37 chain 42914 chr6 171115067 + 102219409 102219890 L1PA4 6152 - 0 481 65523 113 0 1 146 1 0 221 chain 3344 chr6 171115067 + 102229724 102229761 MLT1A0 366 - 52 89 218162 37 chain 16090 chr6 171115067 + 102231095 102231376 THE1D 372 + 90 370 138090 71 62 63 116 1 0 20 1 0 10 chain 17853 chr6 171115067 + 102232210 102232429 THE1D-int 1627 + 1401 1620 133233 219 chain 550640 chr6 171115067 + 102236086 102242229 L1PA3long 6157 - 0 6151 1359 339 1 0 440 0 1 69 0 4 260 0 1 2352 0 1 1712 0 1 829 11 12 130 chain 11811 chr6 171115067 + 102272069 102272309 L1PB1 5432 - 46 264 152979 16 1 0 24 2 0 9 18 14 15 28 16 11 1 0 43 2 1 18 1 0 51 chain 4174 chr6 171115067 + 102284311 102284390 MER33 330 + 133 214 204925 11 4 11 23 6 0 13 0 1 22 chain 29486 chr6 171115067 + 102311730 102312039 AluYb8 318 + 0 309 86682 309 chain 184573 chr6 171115067 + 102320984 102323046 L1PA5 6144 - 12 2076 20538 1926 0 1 46 0 1 90 chain 11432 chr6 171115067 + 102325195 102325356 MER2 342 + 87 251 154557 15 0 2 12 8 9 126 chain 44691 chr6 171115067 + 102397245 102397816 L1PA7 6471 - 4 583 63387 15 1 0 54 2 9 80 4 5 104 0 4 205 3 0 103 chain 4301 chr6 171115067 + 102404564 102404615 L1PB4 2604 - 163 214 203197 51 chain 34111 chr6 171115067 + 102449077 102449519 L1PA8 5853 - 0 435 77467 92 2 1 17 1 0 55 1 0 9 5 4 66 2 0 45 1 0 146 chain 540329 chr6 171115067 + 102536072 102542098 L1PA3long 6157 + 1 6157 2767 5 3 0 146 0 1 415 0 4 204 0 128 4228 1 0 882 0 1 142 chain 237941 chr6 171115067 + 102545295 102548333 L1PA7 6471 - 6 3079 16885 89 0 1 66 11 12 182 0 16 131 2 3 336 6 11 12 0 2 429 0 1 195 1 0 23 2 1 261 14 18 97 0 1 6 1 0 275 3 0 96 0 1 106 5 6 86 1 0 420 0 2 18 8 13 26 0 1 130 chain 9647 chr6 171115067 + 102550299 102550407 LTR7 482 + 374 482 162363 108 chain 272285 chr6 171115067 + 102550409 102553868 HERVH-int 3825 + 0 3825 15064 212 8 19 259 6 114 14 1 0 11 33 27 20 16 36 11 0 1 5 1 0 50 0 1 4 2 0 242 0 3 318 5 1 83 9 0 42 1 0 67 0 1 144 6 35 372 4 9 279 0 6 6 7 1 304 0 1 422 8 218 487 chain 37624 chr6 171115067 + 102555633 102556086 LTR7 482 + 0 482 72655 56 5 3 171 0 31 221 chain 2546 chr6 171115067 + 102576138 102576204 L1MA3 4352 + 4279 4347 232517 4 1 0 5 1 0 22 16 20 17 chain 143456 chr6 171115067 + 102589832 102591458 L1PA4 6152 - 9 1665 25567 140 0 7 198 0 1 996 11 33 281 chain 4004 chr6 171115067 + 102603669 102603734 L1MA1 4479 + 284 350 207323 36 7 8 22 chain 144549 chr6 171115067 + 102613037 102615000 L1PA8 5853 - 2351 4263 25350 138 28 1 149 3 2 599 0 1 107 0 1 222 0 3 73 27 0 96 12 9 14 1 3 64 21 0 12 0 17 218 0 1 37 0 1 14 6 8 122 chain 182993 chr6 171115067 + 102615000 102617353 L1PA8 5853 + 3501 5853 20684 90 1 0 99 0 1 65 0 1 402 0 3 178 2 1 62 0 1 36 0 1 569 2 0 74 0 2 338 0 1 137 1 0 46 2 0 70 2 1 9 18 17 31 8 7 17 12 11 82 chain 531529 chr6 171115067 + 102617741 102623571 L1PA2 6032 + 205 6029 4018 51 1 0 72 3 0 472 0 1 374 2 0 2435 1 0 2419 chain 7744 chr6 171115067 + 102648074 102648287 MER6B 211 - 0 211 172632 94 101 99 18 chain 48778 chr6 171115067 + 102649831 102650396 L1PA4 6152 - 774 1335 59889 303 1 0 21 3 0 237 chain 60148 chr6 171115067 + 102650396 102651090 L1PA4 6152 + 5447 6152 52752 493 0 11 201 chain 6722 chr6 171115067 + 102651091 102651165 THE1B-int 1605 + 1524 1598 179524 74 chain 163326 chr6 171115067 + 102693907 102695969 L1PA7 6471 + 4395 6468 22904 15 8 7 191 0 1 6 0 7 527 11 12 164 0 1 28 1 0 270 1 4 669 10 9 6 0 2 133 8 7 14 chain 48777 chr6 171115067 + 102703586 102704239 L1PA8 5853 - 0 653 59891 92 2 1 19 2 1 45 16 20 65 2 0 48 1 0 114 0 1 247 chain 52258 chr6 171115067 + 102704239 102704889 L1PA8 5853 + 4529 5183 57459 51 0 4 372 0 2 52 10 8 165 chain 233044 chr6 171115067 + 102713654 102716620 L1PA7 6471 + 3497 6468 17142 47 2 11 263 1 5 8 6 0 33 0 1 152 4 12 457 1 2 145 0 1 189 0 1 6 3 2 130 1 0 5 4 5 46 2 0 8 16 2 176 0 1 331 0 1 84 0 3 6 4 5 677 9 10 139 4 0 7 chain 178660 chr6 171115067 + 102722450 102724466 L1PA5 6144 - 12 2031 21109 831 0 4 675 1 0 509 chain 74409 chr6 171115067 + 102724466 102725301 L1PA5 6144 + 3306 4141 46129 835 chain 29575 chr6 171115067 + 102740601 102741035 LTR7Y 441 + 0 441 86298 103 9 0 57 68 84 197 chain 239198 chr6 171115067 + 102741035 102744225 HERVH-int 3825 + 0 2997 16816 265 7 5 219 2 0 11 37 31 39 65 0 34 112 0 15 1 0 12 24 21 21 67 0 25 0 20 11 2 1 49 1 0 133 1 21 752 4 31 534 1 0 728 0 1 18 chain 841 chr6 171115067 + 102741718 102741753 HERVH-int 3825 + 659 694 201693 35 chain 26685 chr6 171115067 + 102744770 102745206 LTR7Y 441 + 0 441 97363 105 9 0 55 69 84 67 4 3 127 chain 22453 chr6 171115067 + 102766742 102767099 THE1B 368 + 0 368 118230 13 2 0 26 4 9 126 1 0 24 43 52 118 chain 53811 chr6 171115067 + 102782029 102782616 L1PA3long 6157 + 5232 5823 56470 72 0 4 515 chain 30011 chr6 171115067 + 102782616 102782948 L1PA3long 6157 + 5824 6156 84775 332 chain 190328 chr6 171115067 + 102800735 102803486 MER61-int 3695 - 0 2703 20015 34 10 4 118 10 13 71 0 1 45 0 1 7 1 0 45 0 2 3 17 0 9 0 1 6 1 0 183 2 1 5 0 3 137 6 10 93 4 3 37 1 0 80 9 22 116 1 0 6 0 1 22 4 1 68 7 12 221 1 0 64 6 5 109 2 1 11 68 15 260 9 8 239 1 0 170 1 0 136 1 2 64 1 4 34 5 6 10 8 11 135 0 1 37 chain 20620 chr6 171115067 + 102842681 102843002 L1M1 2793 - 1548 1872 125222 67 2 1 38 18 23 111 15 14 70 chain 113523 chr6 171115067 + 102898572 102900135 THE1B-int 1605 - 19 1605 33219 182 0 1 14 1 0 372 1 2 284 41 39 145 6 7 59 24 49 31 4 3 78 1 0 320 chain 155795 chr6 171115067 + 102907337 102909513 L1PA8 5853 + 3695 5853 23879 102 8 9 63 11 10 31 0 4 40 9 0 386 0 1 154 34 11 93 0 1 4 1 0 47 6 9 182 0 1 135 1 2 29 2 0 268 0 1 130 0 1 50 6 6 99 1 0 37 8 11 12 0 1 25 18 22 7 1 0 14 1 0 30 0 1 20 1 0 16 1 0 93 chain 8151 chr6 171115067 + 102925082 102925197 MER30 238 + 77 228 170225 25 6 42 84 chain 79806 chr6 171115067 + 102950897 102951960 MER11A 1151 - 0 1151 43680 36 0 4 20 7 6 117 0 1 51 0 1 20 0 1 35 39 22 152 0 4 7 3 2 283 0 1 94 4 0 140 9 108 46 chain 65521 chr6 171115067 + 102983258 102983971 L1PA3long 6157 - 1068 1781 50245 713 chain 95617 chr6 171115067 + 102983971 102985021 L1PA3long 6157 + 5106 6157 37928 901 0 1 149 chain 22318 chr6 171115067 + 102995871 102996210 THE1B 368 + 2 349 118841 24 0 1 13 0 15 113 2 0 8 1 2 14 5 0 27 1 0 72 3 0 7 13 15 36 chain 28618 chr6 171115067 + 102998517 102998818 AluYf4 310 + 0 301 90665 301 chain 36215 chr6 171115067 + 103000000 103000398 L1PA4 6152 + 5752 6151 74609 249 0 1 149 chain 60980 chr6 171115067 + 103048829 103049680 L1PA11 4918 - 476 1351 52343 47 1 0 42 26 22 34 2 17 47 1 0 299 8 22 216 0 1 128 chain 82944 chr6 171115067 + 103057575 103058485 L1PA3long 6157 - 0 910 42361 910 chain 11377 chr6 171115067 + 103068815 103069091 L1PB1 5432 - 11 264 154789 17 1 0 13 1 0 21 1 0 21 15 13 4 1 0 5 2 0 19 44 31 37 22 20 52 chain 115476 chr6 171115067 + 103100239 103101751 L1PA5 6144 - 12 1423 32616 135 1 0 26 0 2 810 5 11 235 111 0 39 4 5 126 0 2 20 chain 17835 chr6 171115067 + 103136772 103137113 L1PB1 5432 - 8 318 133288 6 1 0 14 1 0 13 1 0 21 1 0 24 2 0 11 12 9 14 19 10 6 2 0 16 1 0 43 1 0 16 2 1 52 2 0 10 5 1 13 1 0 10 1 0 20 chain 423034 chr6 171115067 + 103169980 103174960 L1PA2 6032 + 2 6031 9457 253 2 1 3413 281 1309 792 1 0 99 0 1 5 0 6 28 1 17 105 chain 166140 chr6 171115067 + 103175342 103177344 L1PA6 6164 - 2 2029 22501 12 0 6 133 0 1 98 0 1 354 0 3 186 0 1 44 0 4 433 0 1 517 1 9 224 chain 538961 chr6 171115067 + 103200764 103206782 L1PA3long 6157 - 0 6157 2999 1660 1 2 1230 0 3 467 1 5 1884 11 139 170 0 2 442 0 1 152 chain 19668 chr6 171115067 + 103206782 103207041 MLT2A2 560 + 285 560 128205 110 7 18 117 0 5 25 chain 27570 chr6 171115067 + 103229670 103230127 LTR71A 459 - 1 458 94433 68 18 17 21 27 27 119 42 43 162 chain 63480 chr6 171115067 + 103243062 103243853 L1PB1 5432 - 840 1632 51252 358 9 10 72 0 1 5 1 0 346 chain 49889 chr6 171115067 + 103243900 103244793 L1PB1 5432 + 4637 5420 59094 71 1 0 104 0 1 85 1 0 68 0 1 83 0 1 17 0 1 34 91 11 24 1 0 8 1 0 12 5 1 10 2 0 50 1 0 12 6 5 45 1 0 15 32 19 12 24 19 24 1 0 21 1 0 13 1 0 16 chain 513960 chr6 171115067 + 103251295 103257455 L1PA6 6164 - 8 6164 5782 143 4 6 5 2 0 498 6 8 166 5 6 233 1 0 55 0 1 710 0 1 1106 0 1 27 0 1 4 0 1 599 0 2 18 5 6 225 7 0 615 0 1 1077 5 1 175 1 0 178 8 4 32 2 1 6 0 1 47 3 4 192 chain 3601 chr6 171115067 + 103265891 103265933 Tigger7 736 + 359 401 213636 42 chain 4389 chr6 171115067 + 103268546 103268595 L1PA2 6032 - 11 60 202089 49 chain 24068 chr6 171115067 + 103268595 103268869 L1HS 6032 + 971 1245 109936 274 chain 73437 chr6 171115067 + 103272643 103273479 L1PA5 6144 - 6 841 46820 59 3 1 272 0 1 502 chain 34786 chr6 171115067 + 103273479 103273873 L1PA5 6144 + 4886 5280 76375 394 chain 25316 chr6 171115067 + 103287715 103288003 L1PA4 6152 - 0 284 103139 6 4 0 278 chain 16632 chr6 171115067 + 103289596 103289778 L1PA5 6144 - 1133 1315 136332 182 chain 95008 chr6 171115067 + 103289778 103290889 L1PA5 6144 + 5032 6144 38094 645 0 2 5 3 1 11 1 2 446 chain 21823 chr6 171115067 + 103297958 103298212 AluY 311 + 40 296 120928 92 0 1 97 0 1 65 chain 19203 chr6 171115067 + 103304836 103305052 L1PA3long 6157 + 5941 6157 129519 216 chain 8257 chr6 171115067 + 103318639 103318741 MLT2A2 560 - 458 560 169642 102 chain 428035 chr6 171115067 + 103318940 103324908 HERVL-int 5654 + 0 5654 9351 47 3 0 18 0 1 4 1 0 112 0 1 102 1 3 116 5 11 233 2 1 158 0 1 261 1 0 6 0 1 22 0 20 125 0 1 219 20 21 240 8 10 959 5 9 244 1 0 262 1 0 5 11 13 119 0 1 52 0 1 360 1 2 153 7 11 30 3 4 63 0 3 80 0 48 73 3 0 93 31 22 608 3 0 5 6 9 102 6 7 345 0 3 28 399 0 206 chain 33578 chr6 171115067 + 103324331 103324702 L1PA4 6152 - 1 372 78274 371 chain 92275 chr6 171115067 + 103357752 103359078 LTR12C 1709 - 1 1709 38885 83 5 4 299 21 22 72 11 4 20 0 1 15 25 0 41 5 220 51 0 118 185 3 0 68 4 41 76 7 50 42 4 5 27 0 2 262 chain 110078 chr6 171115067 + 103363133 103364443 L1PA7 6471 - 12 1319 34196 15 0 2 332 0 1 129 0 1 362 0 3 32 10 0 430 chain 63580 chr6 171115067 + 103369215 103369972 LTR17 781 - 0 781 51197 31 0 22 69 0 1 331 1 0 10 0 2 315 chain 31078 chr6 171115067 + 103406760 103407197 MLT2A2 560 + 0 457 82384 183 1 0 13 29 30 127 0 7 34 6 19 44 chain 385182 chr6 171115067 + 103421866 103427340 L1PB1 5432 + 51 5420 10602 38 5 3 59 0 11 115 0 1 133 1 0 190 4 1 25 13 16 113 0 1 187 38 42 59 0 1 82 0 1 249 115 0 10 5 17 129 5 9 58 2 1 139 4 10 308 3 0 128 18 0 80 7 4 5 0 3 171 0 5 40 2 0 56 3 2 288 2 1 170 1 2 416 1 4 287 0 5 51 0 1 285 1 6 363 1 0 170 18 19 6 3 0 368 3 2 106 1 2 9 3 0 24 1 0 9 15 10 12 2 13 35 9 8 12 2 1 42 1 0 14 2 1 5 1 0 14 8 0 13 28 23 20 1 0 21 1 0 13 1 0 16 chain 2902 chr6 171115067 + 103439707 103439738 L1MA8 2339 - 146 177 227004 31 chain 56892 chr6 171115067 + 103448356 103449061 LTR30 714 - 11 714 54603 200 28 27 260 1 0 216 chain 469503 chr6 171115067 + 103451516 103456891 L1PA5 6144 + 740 6132 8053 287 1 0 192 0 1 172 2 0 10 0 1 4 11 7 394 1 14 15 2 1 1223 0 4 230 0 1 354 2 1 425 0 1 216 0 1 151 0 3 1433 4 5 246 chain 39051 chr6 171115067 + 103512509 103512981 L1PA5 6144 - 1 470 70662 179 2 0 159 1 0 131 chain 72822 chr6 171115067 + 103539912 103540953 MER11A 1151 + 0 1151 47119 54 1 100 22 8 0 118 4 0 32 0 2 112 3 4 94 5 6 55 15 14 69 0 3 136 8 41 22 18 0 36 0 1 60 6 7 163 chain 53474 chr6 171115067 + 103575365 103576046 LTR12_ 688 - 0 688 56704 361 0 3 53 4 5 20 5 6 191 0 2 47 chain 18103 chr6 171115067 + 103592576 103592813 THE1B-int 1605 - 1365 1603 132594 38 0 1 4 1 0 51 1 0 4 0 1 119 0 1 19 chain 36362 chr6 171115067 + 103608735 103609253 MLT2A2 560 + 0 560 74419 194 8 11 111 31 32 55 1 39 118 chain 7626 chr6 171115067 + 103610834 103610928 Tigger7 736 - 345 439 173378 94 chain 29550 chr6 171115067 + 103640616 103640926 AluYa5 310 - 0 310 86415 310 chain 89979 chr6 171115067 + 103651114 103652099 L1PA3long 6157 + 5172 6157 39656 985 chain 5890 chr6 171115067 + 103661081 103661153 LTR24B 570 - 127 199 186285 72 chain 229706 chr6 171115067 + 103670785 103673423 L1PA4 6152 + 3508 6152 17320 1571 0 1 395 1 4 665 0 2 6 chain 16380 chr6 171115067 + 103683632 103683834 L1PA7 6471 + 6257 6461 137254 175 0 2 27 chain 12219 chr6 171115067 + 103687126 103687487 THE1B 368 + 0 368 151347 76 168 173 17 3 4 33 6 7 58 chain 442125 chr6 171115067 + 103696016 103701150 L1PA5 6144 + 0 6140 8992 89 0 996 51 0 2 582 0 1 585 1 0 870 1 0 332 0 1 421 0 1 58 0 3 885 1 0 94 1 0 245 10 11 191 0 1 466 1 0 107 1 2 135 0 4 7 chain 2905 chr6 171115067 + 103725284 103725369 MER57C2 434 - 190 275 226978 19 32 0 10 2 34 22 chain 113322 chr6 171115067 + 103741512 103742841 LTR12C 1709 - 0 1709 33273 12 0 3 196 0 102 151 5 0 17 0 4 106 4 2 4 1 0 131 0 278 428 0 1 274 chain 9639 chr6 171115067 + 103754512 103754821 L1PB1 5432 + 5108 5390 162398 6 5 0 24 1 0 8 1 0 10 2 0 3 2 0 10 11 9 27 16 19 13 4 3 39 5 4 13 18 0 8 45 49 20 1 0 17 chain 180769 chr6 171115067 + 103762202 103764419 L1PA7 6471 - 14 2296 20919 215 0 2 93 3 1 11 1 0 431 0 1 74 0 5 149 0 33 105 0 7 32 0 2 901 1 2 10 0 1 15 6 20 85 0 1 61 0 1 24 chain 42719 chr6 171115067 + 103764419 103764967 L1PA7 6471 + 3617 4166 65661 233 0 2 136 4 3 175 chain 12591 chr6 171115067 + 103770527 103770664 L1PA5 6144 - 7 144 149873 137 chain 7753 chr6 171115067 + 103813723 103813840 L1MA4A 3247 + 3025 3138 172587 35 0 1 46 1 0 24 4 0 7 chain 72833 chr6 171115067 + 103816755 103818060 L1PA8 5853 - 166 1116 47110 8 0 1 70 2 0 46 5 4 367 310 0 59 0 5 39 0 1 15 49 3 60 2 0 3 2 0 148 1 2 119 chain 18715 chr6 171115067 + 103818060 103818299 L1P3 4156 + 3903 4139 130690 199 16 13 24 chain 19598 chr6 171115067 + 103823797 103824018 L1PA4 6152 - 1793 2017 127892 95 0 3 126 chain 152982 chr6 171115067 + 103824018 103825790 L1PA4 6152 + 4359 6152 24233 140 0 1 552 0 1 12 0 1 309 1 2 262 0 14 354 1 4 141 chain 20508 chr6 171115067 + 103845752 103846121 THE1C 375 + 0 370 125607 109 90 92 149 1 0 20 chain 28409 chr6 171115067 + 103868744 103869053 AluYb8 318 + 0 306 91544 132 3 0 174 chain 105505 chr6 171115067 + 103901893 103908346 L1PA5 6144 - 1 2373 35372 359 5111 1030 528 1 0 32 0 1 422 chain 62911 chr6 171115067 + 103908346 103909067 L1PA5 6144 + 4761 5484 51372 284 0 1 241 0 1 196 chain 57212 chr6 171115067 + 103909068 103909723 L1PA5 6144 + 5488 6143 54394 655 chain 514024 chr6 171115067 + 103939290 103945063 L1PA3long 6157 - 245 6155 5773 604 0 1 1320 0 1 53 0 1 640 0 1 351 0 1 1774 6 9 252 0 128 611 13 14 149 chain 417773 chr6 171115067 + 103970008 103975600 L1PA6 6164 + 364 5842 9589 30 44 19 36 19 0 59 0 1 5 36 24 28 22 0 3 52 0 176 21 0 47 1 18 118 1 5 113 4 5 4 1 0 12 0 1 172 28 27 168 8 9 159 5 4 718 7 0 56 0 2 111 0 7 43 17 25 511 8 8 102 0 2 791 0 1 370 0 3 61 1 0 231 9 8 758 0 1 426 chain 146081 chr6 171115067 + 103976245 103978063 L1PA7 6471 + 4634 6467 25151 29 0 8 8 0 3 148 0 1 104 2 0 26 1 2 5 1 0 439 0 2 204 4 3 193 0 3 325 1 2 328 chain 12598 chr6 171115067 + 103982023 103982253 LTR49 580 - 143 401 149842 5 1 0 54 58 88 66 1 0 45 chain 11327 chr6 171115067 + 103990166 103990311 L1PA8 5853 - 0 143 154975 93 1 0 19 3 2 29 chain 94056 chr6 171115067 + 104004455 104005498 L1PA3long 6157 - 7 1049 38333 142 1 0 900 chain 74150 chr6 171115067 + 104005498 104006316 L1PA3long 6157 + 4277 5099 46393 80 0 4 738 chain 201917 chr6 171115067 + 104027733 104030243 L1PA7 6471 - 2 2559 19073 11 0 2 4 0 1 132 5 0 6 1 6 257 2 5 133 0 12 106 0 1 163 1 6 96 0 1 28 0 2 542 1 0 43 0 1 168 0 1 73 0 4 173 5 6 227 1 0 209 0 12 12 12 18 8 1 0 64 7 5 19 chain 6733 chr6 171115067 + 104033216 104033301 Tigger1 2417 - 513 598 179451 85 chain 234866 chr6 171115067 + 104037277 104039920 L1PA2 6032 - 13 2670 17039 604 0 2 324 0 5 681 0 1 24 0 1 147 0 4 475 0 1 388 chain 27761 chr6 171115067 + 104047854 104048149 AluYb8 318 - 0 295 93835 295 chain 205616 chr6 171115067 + 104050295 104053205 L1PA10 4194 - 33 3024 18817 11 1 0 32 3 0 32 5 4 206 0 16 74 0 3 95 2 3 14 0 1 56 1 2 297 1 0 4 1 15 126 30 34 180 0 1 109 10 14 98 0 1 15 4 6 10 0 2 13 7 11 52 55 56 76 0 7 315 7 6 47 0 3 70 1 0 4 0 1 194 0 11 117 0 1 77 9 11 231 0 1 131 0 1 4 9 16 74 chain 76676 chr6 171115067 + 104053433 104054305 L1PA4 6152 + 5263 6143 45132 638 0 4 33 0 3 124 0 1 77 chain 7969 chr6 171115067 + 104062114 104062220 L1PB2 3958 - 212 317 171223 64 2 1 40 chain 17502 chr6 171115067 + 104066619 104066850 L1PA10 4194 - 33 268 133831 11 1 0 34 3 0 39 1 0 33 0 9 109 chain 142464 chr6 171115067 + 104066850 104068808 L1PA10 4194 + 1996 3922 25732 471 61 6 157 0 2 124 0 1 125 34 52 15 5 6 7 2 0 56 1 2 12 1 2 363 2 0 90 0 1 245 1 3 186 chain 14177 chr6 171115067 + 104072259 104072420 L1PA3long 6157 + 5996 6157 143966 161 chain 5734 chr6 171115067 + 104078525 104078597 L1MA7 2200 - 254 326 187802 72 chain 38731 chr6 171115067 + 104078602 104079032 L1PA2 6032 + 5602 6032 71106 430 chain 206773 chr6 171115067 + 104080674 104083610 L1PBa 3878 + 866 3793 18733 109 1 2 10 1 0 201 16 16 257 1 5 139 9 10 32 13 10 100 0 4 50 2 0 121 22 26 461 0 5 24 4 5 4 1 0 253 6 0 119 9 10 59 0 1 153 3 0 142 30 27 209 1 0 109 0 1 38 1 2 6 2 0 12 3 4 113 2 1 22 2 0 10 16 10 14 1 0 5 5 3 13 chain 59794 chr6 171115067 + 104092848 104093594 L1PA7 6471 - 2851 3601 52935 8 0 1 29 5 6 28 0 4 320 11 5 217 0 4 128 chain 174296 chr6 171115067 + 104093601 104095727 L1PA7 6471 + 3630 6467 21562 664 14 708 621 0 4 509 13 14 92 0 6 65 1 0 6 0 2 5 4 5 124 0 4 8 chain 60835 chr6 171115067 + 104102511 104103163 L1PA2 6032 - 0 652 52411 652 chain 88998 chr6 171115067 + 104103163 104104126 L1PA2 6032 + 4394 5357 40006 963 chain 19827 chr6 171115067 + 104122172 104122408 L1PA4 6152 + 5870 6143 127723 41 0 8 79 0 29 116 chain 87547 chr6 171115067 + 104124295 104125561 LTR12D 1347 - 0 1347 40554 248 1 108 272 25 26 35 37 0 91 41 31 191 9 45 19 1 5 6 4 0 17 18 2 251 chain 2049 chr6 171115067 + 104124817 104124841 LTR12D 1347 - 671 695 143690 24 chain 3159 chr6 171115067 + 104124876 104124913 LTR12D 1347 - 730 767 143690 37 chain 3703 chr6 171115067 + 104125004 104125045 LTR12D 1347 - 811 852 196529 41 chain 557256 chr6 171115067 + 104156906 104162931 L1PA2 6032 + 3 6032 584 439 0 1 168 0 2 1543 0 1 3875 chain 5536 chr6 171115067 + 104165686 104165749 L1PA3long 6157 + 6093 6157 189712 59 0 1 4 chain 97671 chr6 171115067 + 104205563 104206675 L1PA2 6032 - 1 1587 37379 914 24 498 174 chain 4241 chr6 171115067 + 104228201 104228314 MER5A 189 - 45 160 203995 24 8 9 28 36 37 17 chain 4897 chr6 171115067 + 104232162 104232282 MER5A 189 + 46 165 196292 54 11 4 10 27 33 18 chain 110091 chr6 171115067 + 104241555 104242950 L1PA8A 6298 + 4885 6290 34187 1220 9 26 14 15 16 17 2 9 8 14 0 44 1 0 51 chain 19517 chr6 171115067 + 104243745 104244104 THE1D 372 - 0 372 128604 148 28 58 69 62 45 52 chain 512499 chr6 171115067 + 104249725 104255874 L1PA5 6144 + 9 6141 5922 325 5 6 175 3 1 436 25 0 12 0 6 178 9 8 13 9 0 490 0 1 490 0 9 154 10 8 473 0 1 303 0 5 50 5 6 556 5 6 196 0 2 1514 3 1 694 3 0 13 chain 90523 chr6 171115067 + 104280597 104282147 L1PA8 5853 + 4376 5853 39466 329 323 0 213 3 0 6 0 1 15 27 286 335 2 1 46 2 0 71 11 9 52 2 1 24 6 5 83 chain 8665 chr6 171115067 + 104315493 104315695 L1PB1 5432 - 41 222 167397 21 1 0 24 24 19 19 16 6 6 2 0 15 1 0 43 2 1 16 2 1 10 chain 4659 chr6 171115067 + 104323140 104323301 LTR48 738 + 90 254 198964 14 67 69 16 16 17 48 chain 16519 chr6 171115067 + 104365876 104366065 L1PA4 6152 + 5963 6151 136858 39 1 0 149 chain 5303 chr6 171115067 + 104374791 104374847 L1PA5 6144 + 5355 5411 191988 56 chain 66115 chr6 171115067 + 104374847 104375579 L1PA5 6144 + 5412 6144 50046 732 chain 29612 chr6 171115067 + 104386425 104387120 MER75 514 + 58 470 86166 181 0 2 95 1 19 25 304 0 73 0 1 16 chain 13366 chr6 171115067 + 104387172 104387347 MSTA 426 - 247 426 146826 19 5 9 151 chain 33145 chr6 171115067 + 104392093 104392454 L1PA2 6032 - 0 361 78992 361 chain 14284 chr6 171115067 + 104413752 104414108 THE1D 372 - 0 372 143612 27 1 0 5 5 16 82 74 75 59 44 55 33 7 1 19 chain 115192 chr6 171115067 + 104448515 104449812 L1PA5 6144 - 1614 2911 32718 1297 chain 68147 chr6 171115067 + 104449816 104450567 L1PA5 6144 + 4495 5245 49182 711 1 0 39 chain 78426 chr6 171115067 + 104450589 104451467 L1PA5 6144 + 5250 6131 44305 308 0 1 116 0 2 454 chain 164436 chr6 171115067 + 104503832 104505845 L1PA7 6471 + 4445 6467 22754 405 0 4 321 4 5 216 0 6 205 7 10 587 1 3 18 0 1 80 14 10 64 3 2 72 3 0 13 chain 40488 chr6 171115067 + 104509539 104509999 L1P1 4361 - 441 901 68232 460 chain 98850 chr6 171115067 + 104509999 104511090 L1PA3long 6157 + 5066 6157 37062 1091 chain 12418 chr6 171115067 + 104517575 104517722 MER107 203 - 56 203 150567 147 chain 24621 chr6 171115067 + 104520226 104520764 L1PB1 5432 - 2 528 106879 4 1 0 8 1 0 14 1 0 11 1 0 19 36 48 18 13 4 8 3 0 16 1 0 6 14 18 17 5 4 14 2 1 32 22 20 8 4 0 16 1 0 10 1 0 21 1 0 11 9 8 69 1 0 19 0 2 100 chain 10453 chr6 171115067 + 104520775 104520906 MER2 342 - 55 186 158478 131 chain 4158 chr6 171115067 + 104520918 104520966 MER2 342 - 117 165 205122 48 chain 12926 chr6 171115067 + 104524110 104524288 L1MA3 4352 + 3889 4062 148523 147 5 0 26 chain 28399 chr6 171115067 + 104527081 104527470 MLT2A1 477 + 0 385 91590 117 33 25 27 2 6 210 chain 435974 chr6 171115067 + 104527547 104532994 HERVL-int 5654 + 0 5654 9166 600 1 0 81 9 28 157 0 5 54 0 1 16 7 9 171 1 2 349 12 13 180 8 4 184 0 11 72 0 1 175 2 3 350 0 1 68 0 1 18 0 3 1025 1 2 95 1 2 164 22 177 96 0 1 82 3 0 171 0 5 583 0 1 264 11 4 49 0 3 295 0 9 21 1 0 48 chain 3212 chr6 171115067 + 104533329 104533369 MLT2A1 477 + 436 475 220713 21 1 0 18 chain 308615 chr6 171115067 + 104536005 104539462 L1PA4 6152 + 2696 6152 13061 517 0 1 2145 0 1 205 0 1 580 4 0 6 chain 131749 chr6 171115067 + 104540231 104541698 L1PA3long 6157 + 4682 6157 27685 477 0 5 201 0 1 640 1 3 148 chain 7714 chr6 171115067 + 104543326 104543410 L1P1 4361 + 1 85 172833 84 chain 55806 chr6 171115067 + 104552660 104553315 L1PA7 6471 + 5456 6119 55243 165 0 3 169 0 4 174 0 1 147 chain 25979 chr6 171115067 + 104553327 104553662 L1PA7 6471 + 6132 6467 100100 166 10 11 6 0 1 145 2 0 6 chain 75971 chr6 171115067 + 104597182 104598454 L1PB2 3958 - 121 1396 45499 61 2 1 24 10 8 20 3 1 41 1 0 40 28 19 4 1 0 68 6 5 94 3 1 12 2 0 60 10 8 7 0 3 43 10 8 13 19 39 39 30 29 33 9 8 14 0 1 26 11 17 139 11 10 17 1 0 178 1 0 35 1 0 133 0 4 12 chain 121824 chr6 171115067 + 104598804 104600373 THE1A-int 1579 - 6 1579 30437 10 3 1 91 4 5 352 0 1 19 6 5 176 15 16 419 6 10 468 chain 35164 chr6 171115067 + 104604174 104604580 L1PA4 6152 - 9 416 75965 139 0 1 267 chain 4159 chr6 171115067 + 104613404 104613455 L1M1 2793 + 1984 2039 205102 26 0 4 25 chain 13664 chr6 171115067 + 104637483 104637631 L1PA5 6144 - 4 152 145729 148 chain 81191 chr6 171115067 + 104637632 104638550 L1PA5 6144 + 5049 5973 43093 808 1 7 109 chain 8879 chr6 171115067 + 104650701 104650812 L1PA10 4194 - 161 272 166234 111 chain 25174 chr6 171115067 + 104667053 104667339 L1PA6 6164 + 5870 6156 103884 286 chain 8583 chr6 171115067 + 104718028 104718125 L1PA4 6152 - 0 97 167827 97 chain 78214 chr6 171115067 + 104723845 104725019 L1PA11 4918 + 3482 4629 44409 150 0 2 36 3 4 14 0 1 165 0 2 16 7 6 37 2 3 395 0 4 13 1 2 35 1 0 26 2 1 13 3 0 65 2 0 17 1 0 19 4 0 8 36 27 11 1 0 13 44 32 7 2 0 5 2 0 18 chain 29127 chr6 171115067 + 104742225 104742538 AluYb8 318 - 8 318 88426 192 3 0 118 chain 5358 chr6 171115067 + 104743153 104743210 L1PA6 6164 + 6104 6161 191453 57 chain 8088 chr6 171115067 + 104754871 104755003 MER85 139 + 0 139 170554 75 28 35 29 chain 6636 chr6 171115067 + 104777935 104778013 L1PA8 5853 - 0 78 180197 78 chain 95685 chr6 171115067 + 104793801 104795369 HSMAR1 1287 + 5 1287 37902 117 0 5 174 1 5 108 3 5 138 2 0 467 0 1 50 0 1 81 305 7 8 2 0 5 0 2 50 0 1 57 chain 4129 chr6 171115067 + 104800426 104800481 MADE1 96 - 0 96 205517 12 0 41 43 chain 27956 chr6 171115067 + 104809184 104809480 AluYa5 310 + 0 297 93142 131 0 1 165 chain 548032 chr6 171115067 + 104822482 104828630 L1PA4 6152 + 0 6151 1704 2212 1 0 65 1 0 61 0 1 570 0 1 537 7 2 735 0 3 167 0 4 340 0 1 673 1 0 520 0 1 258 chain 6214 chr6 171115067 + 104879674 104879752 MER57B2 428 + 350 428 183466 78 chain 24604 chr6 171115067 + 104891920 104892199 L1PA7 6471 + 6190 6469 106975 279 chain 98546 chr6 171115067 + 104894031 104895510 LTR12C 1709 + 0 1709 37140 30 0 2 224 6 7 11 11 20 8 7 0 36 14 57 48 0 1 20 0 3 4 1 0 71 0 1 57 15 16 103 0 118 25 30 0 22 1 131 97 1 0 5 3 1 90 52 20 54 5 1 171 2 1 172 1 0 82 chain 466675 chr6 171115067 + 104900291 104905335 L1PA2 6032 + 987 6025 8166 305 5 0 532 1 0 4201 chain 30254 chr6 171115067 + 104912069 104912385 AluYb8 318 + 0 316 84045 316 chain 2942 chr6 171115067 + 104915489 104915536 MER3 215 + 134 193 226275 26 3 15 18 chain 562761 chr6 171115067 + 104937268 104943299 L1PA2 6032 + 1 6032 279 6031 chain 5328 chr6 171115067 + 104956075 104956156 MADE1 96 + 0 96 191735 46 4 19 31 chain 22553 chr6 171115067 + 104994475 104994721 L1PA3long 6157 + 5911 6157 117797 246 chain 18602 chr6 171115067 + 105009267 105009494 L1PA7 6471 + 6241 6470 131219 66 7 11 111 2 0 41 chain 3612 chr6 171115067 + 105016735 105016786 L1MA8 2339 + 2288 2339 213451 51 chain 55218 chr6 171115067 + 105018330 105018937 L1PA4 6152 - 333 940 55573 607 chain 30539 chr6 171115067 + 105018941 105019284 L1PA4 6152 + 5798 6141 83356 343 chain 30684 chr6 171115067 + 105029759 105030121 L1PA7 6471 - 2 367 83065 13 0 1 141 0 1 181 0 1 27 chain 18690 chr6 171115067 + 105059207 105059531 THE1D 372 - 32 365 130972 116 54 62 79 0 1 9 16 16 50 chain 31201 chr6 171115067 + 105072433 105072800 L1PA4 6152 - 5 373 82158 142 1 0 4 4 6 216 chain 30172 chr6 171115067 + 105081214 105081588 THE1C 375 - 0 375 84266 26 1 0 171 0 1 66 0 1 110 chain 38631 chr6 171115067 + 105089769 105090199 L1PA5 6144 - 4 434 71250 430 chain 13596 chr6 171115067 + 105090199 105090359 L1PA5 6144 + 5559 5719 145989 160 chain 58294 chr6 171115067 + 105105724 105106473 L1PA10 4194 + 884 1636 53810 209 7 10 533 chain 250311 chr6 171115067 + 105113235 105117248 L1PA11 4918 + 1208 4508 16228 140 0 1 73 0 3 388 3 5 15 0 2 164 11 13 484 4 5 10 0 1 123 1 4 7 3 0 74 2 0 26 1 0 583 20 0 91 0 9 146 2 1 90 1 0 14 681 0 545 5 8 21 21 1 76 10 5 53 9 8 10 2 0 68 2 0 12 2 1 20 chain 32984 chr6 171115067 + 105115716 105116200 MLT2A2 560 + 0 506 79242 168 51 50 66 0 1 28 0 11 77 1 12 93 chain 529492 chr6 171115067 + 105118662 105125088 L1PA7 6471 + 3 6469 4246 383 15 19 69 0 1 593 25 37 256 0 2 1395 0 4 844 1 0 332 0 1 65 15 14 256 0 4 49 0 1 279 0 2 209 0 4 368 2 1 62 0 1 100 3 0 6 0 2 5 6 17 230 0 3 10 5 1 831 2 0 10 chain 4407 chr6 171115067 + 105128213 105128262 LTR22B 500 + 0 49 201855 49 chain 6835 chr6 171115067 + 105128312 105128398 LTR22B 500 - 414 500 178694 86 chain 4159 chr6 171115067 + 105167260 105167307 L1MA10 1535 + 1256 1303 205117 47 chain 545538 chr6 171115067 + 105185190 105191199 L1PA2 6032 + 0 6031 2004 71 1 2 184 1 0 107 0 1 321 0 3 8 0 7 1148 0 2 1273 0 8 683 0 1 2212 chain 477600 chr6 171115067 + 105204452 105210583 L1PA7 6471 + 5 6466 7814 196 11 10 118 18 188 11 6 33 160 5 15 33 25 100 135 0 27 15 0 21 246 0 1 445 1 0 240 3 2 519 0 2 119 3 0 211 0 3 645 1 0 98 8 10 240 1 2 242 0 1 63 3 4 51 0 2 147 13 11 423 2 1 312 0 1 513 1 0 644 1 0 41 4 5 148 3 0 7 chain 29262 chr6 171115067 + 105221955 105222264 AluYa5 310 - 2 310 87729 182 1 0 126 chain 6182 chr6 171115067 + 105229867 105229975 MADE1 96 - 0 95 183721 33 24 12 16 1 0 34 chain 29754 chr6 171115067 + 105240485 105240862 LTR3B_ 500 + 0 377 85636 299 8 4 39 0 4 31 chain 506086 chr6 171115067 + 105247635 105253732 L1PA6 6164 + 0 6156 6458 150 1 20 67 0 2 148 18 14 166 1 0 156 1 2 62 0 17 122 0 6 257 0 1 262 1 0 57 0 1 245 1 2 233 3 0 25 0 9 89 0 3 78 0 2 121 18 8 466 0 3 254 0 1 140 0 1 227 1 23 150 22 0 588 2 3 617 0 4 85 0 3 418 0 1 24 1 2 56 0 2 233 0 1 379 6 5 133 1 0 12 chain 3439 chr6 171115067 + 105292982 105293022 MADE1 96 + 2 42 216394 40 chain 65036 chr6 171115067 + 105320401 105321138 L1PA5 6144 - 2012 2746 50382 456 2 0 174 1 0 104 chain 177638 chr6 171115067 + 105321138 105323145 L1PA5 6144 + 4116 6140 21198 298 6 18 13 0 3 849 0 4 493 2 0 346 chain 4913 chr6 171115067 + 105349697 105349766 L1MC1 2226 - 176 242 196134 4 1 0 51 2 0 11 chain 5583 chr6 171115067 + 105351958 105352077 L1MC1 2226 - 1349 1469 189242 7 1 0 28 28 27 13 0 3 42 chain 6937 chr6 171115067 + 105362681 105362766 L1MA3 4352 + 2727 2811 177909 46 1 0 38 chain 129713 chr6 171115067 + 105438437 105439902 SVA_C 1631 - 0 1584 28150 147 0 1 391 0 1 54 1 0 33 0 1 60 0 128 616 0 1 7 0 1 33 0 1 101 14 0 8 chain 35420 chr6 171115067 + 105451754 105452210 MLT2A1 477 - 0 477 75655 65 3 27 216 5 2 167 chain 4568 chr6 171115067 + 105493479 105493530 U6 107 - 43 94 200016 51 chain 389637 chr6 171115067 + 105493894 105498596 L1PA5 6144 - 1 4399 10462 2466 0 2 121 0 1 490 0 4 46 0 11 670 0 1 502 323 0 84 chain 14783 chr6 171115067 + 105511271 105511510 AluSz 310 + 43 282 141991 60 9 9 63 32 0 10 1 33 64 chain 22225 chr6 171115067 + 105536138 105536487 THE1B 368 + 0 357 119235 162 8 7 26 3 0 6 30 43 72 1 0 41 chain 16921 chr6 171115067 + 105554689 105555126 L1MA3 4352 - 3 402 135789 19 6 2 14 1 0 23 21 19 14 2 0 48 0 1 22 1 0 4 1 6 63 134 100 64 chain 11914 chr6 171115067 + 105588573 105588940 L1MC2 1988 - 70 440 152534 38 96 92 53 57 64 50 26 28 5 2 0 40 chain 3798 chr6 171115067 + 105591690 105591739 L1MA9 1812 - 1734 1781 210416 9 2 0 38 chain 91558 chr6 171115067 + 105619887 105620913 L1PA4 6152 + 5120 6143 39109 162 1 0 216 2 0 645 chain 27315 chr6 171115067 + 105640280 105640622 MER75 514 + 154 514 95222 173 2 20 167 chain 59020 chr6 171115067 + 105644594 105645800 Tigger1 2417 + 528 1475 53382 213 5 6 56 332 0 217 0 15 31 0 13 25 15 44 144 1 0 6 25 26 34 22 25 16 10 22 54 chain 5856 chr6 171115067 + 105655834 105655899 Tigger3b 1229 - 730 795 186632 65 chain 441319 chr6 171115067 + 105664792 105670641 HERVL-int 5654 - 0 5654 9018 223 0 1 34 1 3 12 310 1 18 1 4 70 4 1 6 0 6 43 13 15 156 0 1 99 0 1 57 0 3 60 7 11 672 1 7 182 0 2 27 2 0 1282 0 1 284 0 3 40 8 2 234 0 1 10 1 10 31 0 9 37 0 6 88 0 4 47 1 4 45 2 1 4 0 1 75 0 9 36 0 25 84 1 2 524 0 2 149 12 22 9 0 1 13 6 7 229 0 9 599 chain 416886 chr6 171115067 + 105676441 105681709 L1PA8 5853 - 21 5800 9604 72 1 0 19 2 1 45 17 16 115 11 10 321 1 2 81 16 0 58 1 2 77 0 2 19 0 5 42 1 9 228 1 0 701 0 1 47 0 1 547 0 1 16 1 0 225 0 530 151 0 6 198 6 10 138 0 3 39 0 1 307 1 0 229 0 5 246 0 2 81 0 1 420 1 0 23 0 7 122 6 0 11 0 10 276 0 3 42 18 6 191 52 16 13 1 0 9 3 1 19 chain 347725 chr6 171115067 + 105684557 105689556 L1PB1 5432 + 703 5392 11675 59 0 3 333 0 3 96 9 19 29 1 5 141 29 9 10 7 8 89 291 0 91 0 5 309 0 2 233 6 5 22 3 4 145 0 1 157 10 0 18 0 1 13 0 9 222 0 1 66 8 7 7 0 1 15 2 1 359 5 9 118 0 4 247 1 2 145 13 0 6 4 0 78 0 3 55 0 3 446 0 2 208 0 4 8 0 4 74 0 8 12 0 1 177 3 0 77 0 1 4 1 0 128 2 1 75 13 4 12 3 0 21 1 0 9 16 11 10 2 0 52 2 1 16 1 0 44 1 0 14 1 0 4 63 47 24 1 0 22 chain 553634 chr6 171115067 + 105692249 105698392 L1PA3long 6157 + 0 6157 990 2833 0 1 432 0 4 244 0 1 173 0 4 1615 1 5 845 chain 12832 chr6 171115067 + 105709728 105709870 L1PA2 6032 + 5884 6027 148919 6 0 1 136 chain 5426 chr6 171115067 + 105728859 105729076 MLT1E2 623 - 24 236 190745 17 29 28 56 97 93 18 chain 28710 chr6 171115067 + 105739217 105739594 MLT2A1 477 + 0 384 90295 140 0 1 22 6 10 187 1 3 21 chain 513302 chr6 171115067 + 105786298 105792702 L1PA5 6144 + 0 6132 5851 96 0 1 24 0 14 390 1 5 277 17 0 11 17 34 83 0 4 230 9 0 323 17 13 627 0 1 181 2 4 372 4 7 473 1 0 316 0 4 12 0 1 380 0 2 456 0 4 100 0 3 823 1 5 18 1 4 513 309 0 183 0 1 137 chain 23752 chr6 171115067 + 105815304 105815569 AluYa5 310 + 38 304 111766 93 3 4 169 chain 5899 chr6 171115067 + 105829912 105830106 L1MA8 2339 + 2015 2198 186196 51 108 97 35 chain 16768 chr6 171115067 + 105835387 105835651 MER30 238 - 5 238 136199 124 33 0 23 10 12 74 chain 506069 chr6 171115067 + 105862890 105869027 L1PA5 6144 + 1 6144 6459 60 1 4 55 0 14 76 2 1 741 25 0 156 17 18 36 16 7 50 0 2 1083 1 5 5 3 0 20 1 2 840 1 0 815 1 14 388 0 1 472 0 6 1115 7 0 6 1 8 143 chain 4603 chr6 171115067 + 105869855 105869911 Tigger5 388 + 301 357 199587 56 chain 26598 chr6 171115067 + 105875071 105875447 THE1C 375 - 0 375 97673 25 1 0 14 4 3 129 0 3 24 5 6 46 3 0 125 chain 46677 chr6 171115067 + 105986581 105987178 L1PA8 5853 + 5263 5853 61473 299 1 0 42 6 4 69 3 2 9 1 0 52 2 1 19 2 1 92 chain 58324 chr6 171115067 + 106004065 106004861 L1P3 4156 - 771 1582 53794 31 3 4 63 0 1 7 8 9 173 0 4 385 0 9 7 8 4 46 4 6 57 0 1 4 chain 3261 chr6 171115067 + 106013672 106013709 L1ME1 1623 - 350 387 219771 37 chain 81837 chr6 171115067 + 106062973 106064024 MER11C 1089 - 16 1089 42826 10 0 1 71 1 3 74 1 0 48 0 1 127 0 1 38 1 0 4 1 5 264 7 9 96 0 4 62 0 9 246 chain 4387 chr6 171115067 + 106109618 106109671 MER21A 919 + 507 560 202120 53 chain 32684 chr6 171115067 + 106116378 106116802 MLT2A1 477 - 18 477 79715 22 15 52 74 0 1 140 4 1 169 chain 99060 chr6 171115067 + 106121248 106122593 L1PB1 5432 + 3738 5095 37009 74 8 12 462 5 7 310 0 3 21 12 10 37 0 1 23 2 6 93 37 37 261 chain 28568 chr6 171115067 + 106123129 106123438 AluYa5 310 + 0 308 90876 132 1 0 176 chain 28605 chr6 171115067 + 106130102 106130403 AluYk12 309 + 8 309 90714 301 chain 59117 chr6 171115067 + 106131539 106132185 L1PA3long 6157 - 0 646 53319 646 chain 19433 chr6 171115067 + 106133490 106133781 THE1C 375 + 4 308 128862 110 0 1 65 1 3 17 7 0 6 19 36 66 chain 114538 chr6 171115067 + 106134164 106135731 THE1C-int 1605 + 18 1605 32937 77 0 57 18 3 0 275 85 11 824 9 41 84 7 14 53 0 1 132 chain 17449 chr6 171115067 + 106150625 106150903 THE1B 368 + 0 303 134378 44 0 15 116 1 0 23 42 53 52 chain 557973 chr6 171115067 + 106164003 106170150 L1PA3long 6157 + 4 6155 504 1022 1 0 163 0 3 729 1 0 3625 4 7 602 chain 30491 chr6 171115067 + 106173710 106174095 L1PA7 6471 + 6088 6470 83448 12 5 0 306 0 1 49 1 2 12 chain 11913 chr6 171115067 + 106206315 106206481 L1PA8 5853 - 0 165 152536 93 1 0 19 2 1 35 5 6 11 chain 25549 chr6 171115067 + 106210347 106210646 L1P3 4156 - 2387 2686 101994 299 chain 26120 chr6 171115067 + 106210646 106210952 L1PA7 6471 + 6165 6468 99528 296 3 0 7 chain 182709 chr6 171115067 + 106274169 106276307 L1PA7 6471 + 4332 6470 20714 994 4 0 227 10 12 49 0 3 92 1 2 290 1 0 318 1 0 151 chain 44909 chr6 171115067 + 106289933 106290421 L1PA4 6152 + 5663 6151 63164 488 chain 13935 chr6 171115067 + 106300089 106300303 Tigger1 2417 - 2091 2309 144804 28 3 5 108 19 21 56 chain 153073 chr6 171115067 + 106300993 106302823 SVA_D 2077 - 12 2077 24220 257 0 1 369 3 98 127 2 0 29 49 0 105 0 223 138 0 6 6 0 1 76 40 0 450 2 11 127 7 0 10 2 0 31 chain 2195 chr6 171115067 + 106301780 106301829 SVA_D 2077 - 717 766 90291 49 chain 66627 chr6 171115067 + 106306390 106307141 L1PA5 6144 - 1 752 49817 751 chain 35178 chr6 171115067 + 106308762 106309174 L1PA7 6471 + 5908 6320 75941 412 chain 12068 chr6 171115067 + 106309177 106309325 L1PA7 6471 + 6324 6469 151906 135 3 0 10 chain 18504 chr6 171115067 + 106352247 106352495 7SK 245 + 0 240 131485 79 1 2 119 10 1 39 chain 10336 chr6 171115067 + 106360987 106361114 L1PB4 2604 - 84 215 158957 110 0 4 17 chain 50704 chr6 171115067 + 106395525 106396088 L1PA3long 6157 + 5594 6157 58502 563 chain 23320 chr6 171115067 + 106415109 106415397 AluSg4 309 + 10 299 114096 42 0 4 237 3 0 6 chain 9357 chr6 171115067 + 106430960 106431101 MLT1B 390 + 204 344 163769 16 14 13 111 chain 22800 chr6 171115067 + 106455965 106456259 AluSc 308 + 0 292 116574 132 2 0 41 11 11 108 chain 5505 chr6 171115067 + 106483707 106483792 L1M4c 1769 - 27 115 189987 12 1 0 36 8 12 28 chain 4345 chr6 171115067 + 106566806 106566863 L1MB2 1706 - 62 117 202655 33 1 0 13 1 0 9 chain 19618 chr6 171115067 + 106599569 106599932 THE1B 368 + 0 368 128340 106 16 17 41 1 0 13 59 65 58 0 4 7 6 1 56 chain 30235 chr6 171115067 + 106600017 106600380 THE1B-int 1605 + 1236 1600 84101 112 0 1 71 1 0 62 0 1 117 chain 26107 chr6 171115067 + 106651803 106652114 L1PA7 6471 + 6161 6470 99586 304 2 0 5 chain 18441 chr6 171115067 + 106656619 106657314 L1MD2 1676 + 774 1446 131668 24 74 58 74 18 16 61 32 31 13 75 73 13 1 0 25 176 175 76 7 8 20 1 0 5 chain 21434 chr6 171115067 + 106672476 106672763 AluSp 311 + 8 288 122390 108 13 7 153 2 1 11 chain 41633 chr6 171115067 + 106676011 106676514 LTR17 781 + 255 781 67115 72 0 1 382 1 23 48 chain 289167 chr6 171115067 + 106678261 106681613 HERV17-int 4347 + 12 3395 14072 15 1 0 52 1 0 36 8 7 17 1 0 227 8 10 375 0 3 53 1 5 463 2 0 193 0 1 609 0 4 180 0 3 424 2 0 170 0 14 274 1 0 32 0 5 138 0 4 69 chain 28390 chr6 171115067 + 106683359 106683689 LTR17 781 + 0 326 91617 292 4 0 34 chain 23919 chr6 171115067 + 106696539 106696834 AluSp 311 + 11 303 110814 35 3 0 257 chain 34270 chr6 171115067 + 106707702 106708143 L1PA6 6164 + 5719 6160 77252 27 0 4 81 0 1 119 7 8 64 1 0 130 5 0 7 chain 453369 chr6 171115067 + 106711047 106716920 L1PA8 5853 + 51 5853 8638 21 2 0 10 1 0 13 49 13 190 22 10 46 0 3 240 0 18 14 4 5 93 0 2 6 15 6 42 0 3 418 8 12 315 2 0 199 1 0 27 0 3 258 11 0 393 4 2 154 1 10 253 0 1 49 7 2 52 0 4 204 0 1 77 0 1 58 3 0 70 13 10 503 0 1 25 0 8 263 0 3 26 0 2 143 2 1 269 0 1 100 2 1 153 43 0 152 0 2 70 0 2 191 0 2 250 50 49 34 2 0 41 1 0 27 1 0 1 2 0 11 1 0 46 7 6 18 1 0 93 chain 76348 chr6 171115067 + 106716942 106717841 LTR12C 1709 - 514 1709 45290 73 7 5 5 1 0 98 0 278 110 0 16 40 0 1 76 1 2 401 0 3 87 chain 3590 chr6 171115067 + 106730194 106730365 Tigger9b 617 + 387 550 213827 32 13 13 14 49 58 17 33 16 13 chain 6343 chr6 171115067 + 106758463 106758652 L1MB3 1562 - 7 191 182440 27 23 44 24 65 39 50 chain 25573 chr6 171115067 + 106774168 106774461 AluYk4 311 + 0 291 101862 132 2 0 159 chain 41307 chr6 171115067 + 106776139 106776610 MER9a2 513 + 0 513 67524 398 0 42 73 chain 15305 chr6 171115067 + 106794642 106794846 L1MA2 4263 - 209 411 140477 88 1 0 9 2 1 104 chain 18591 chr6 171115067 + 106799172 106799438 MER47A 366 - 100 366 131257 71 1 0 144 21 22 29 chain 19381 chr6 171115067 + 106799542 106799791 AluSg7 307 + 5 295 129001 126 0 1 5 10 50 108 chain 16937 chr6 171115067 + 106802196 106802385 L1PA3long 6157 - 0 188 135760 155 1 0 33 chain 20286 chr6 171115067 + 106803016 106803253 AluY 311 + 70 308 126264 62 0 1 175 chain 29230 chr6 171115067 + 106810838 106811142 AluYg6 310 + 0 304 87909 304 chain 4290 chr6 171115067 + 106820432 106820479 MADE1 96 + 49 96 203352 47 chain 186839 chr6 171115067 + 106832136 106834671 Charlie3 2679 - 0 2611 20348 59 27 17 328 4 5 32 35 0 110 0 1 31 3 73 277 0 2 60 0 1 73 1 0 78 1 0 211 0 2 139 1 7 241 33 15 170 1 3 78 2 1 197 1 59 84 0 4 171 20 16 48 1 0 18 chain 50063 chr6 171115067 + 106849281 106849817 L1HS 6032 - 1 537 58972 536 chain 4253 chr6 171115067 + 106849817 106849869 L1P1 4361 + 4277 4328 203838 28 1 0 23 chain 537585 chr6 171115067 + 106852459 106858898 L1PA7 6471 + 0 6468 3218 1185 1 0 8 5 16 426 0 1 117 2 1 120 8 0 418 0 3 105 2 3 88 1 0 453 0 9 172 1 5 28 1 0 4 1 2 459 0 1 211 15 16 146 0 3 138 3 0 440 6 5 48 0 2 346 1 0 403 0 1 231 0 3 85 4 0 360 0 1 51 0 1 12 0 11 87 0 1 48 2 4 41 1 0 85 3 0 57 3 0 7 chain 8702 chr6 171115067 + 106868580 106868680 HY3 101 + 0 100 167181 100 chain 13704 chr6 171115067 + 106891596 106891858 L1MA3 4352 - 0 246 145585 22 6 2 11 4 3 26 2 1 5 1 0 24 8 6 17 5 1 121 3 0 7 chain 9161 chr6 171115067 + 106902703 106902802 HY3 101 + 1 100 164756 99 chain 28340 chr6 171115067 + 106928844 106929148 AluYa5 310 - 7 310 91794 177 1 0 126 chain 29458 chr6 171115067 + 106983640 106983947 AluYb8 318 - 0 307 86811 307 chain 36412 chr6 171115067 + 106996620 106997012 L1PA4 6152 - 1 393 74352 392 chain 110145 chr6 171115067 + 107045569 107046770 L1PA2 6032 - 0 1201 34171 1201 chain 13173 chr6 171115067 + 107053811 107054008 L1MA5 2750 + 925 1128 147571 130 0 2 10 1 0 16 18 23 22 chain 5908 chr6 171115067 + 107055601 107055690 U6 107 + 11 103 186100 25 7 10 57 chain 37973 chr6 171115067 + 107060424 107060916 LTR10F 562 + 0 554 72169 81 0 5 77 0 1 38 0 52 12 5 11 198 2 0 79 chain 8821 chr6 171115067 + 107067785 107068357 Tigger2a 444 + 207 375 166549 23 1 6 21 49 0 27 382 22 69 chain 60382 chr6 171115067 + 107079574 107080720 L1MA3 4352 - 28 1000 52641 10 2 1 25 1 0 5 2 1 23 2 0 23 4 0 79 0 1 43 3 0 6 86 68 123 11 12 169 4 0 34 161 0 70 8 25 8 0 2 152 1 0 41 0 1 50 chain 5129 chr6 171115067 + 107099030 107099092 L1MB2 1706 - 208 270 193789 62 chain 28016 chr6 171115067 + 107124532 107124838 AluYb8 318 + 0 304 92947 132 2 0 172 chain 74767 chr6 171115067 + 107154547 107155539 L1PA8 5853 - 0 960 46127 46 29 0 46 2 1 19 2 1 40 0 1 11 2 1 6 2 0 73 2 0 44 1 0 200 6 7 253 0 1 8 0 1 85 1 2 114 chain 32404 chr6 171115067 + 107173337 107173692 L1PA2 6032 + 5676 6031 80194 355 chain 44334 chr6 171115067 + 107191676 107192226 LTR19B 566 - 0 566 63782 42 9 12 14 0 9 35 1 0 304 0 5 145 chain 39136 chr6 171115067 + 107226898 107227388 LOR1a 498 - 0 490 70561 290 1 0 163 0 1 36 chain 117036 chr6 171115067 + 107227779 107229346 THE1B-int 1605 + 0 1598 32112 68 40 39 76 0 3 10 5 6 205 19 44 290 4 5 407 0 1 248 1 2 194 chain 27116 chr6 171115067 + 107229353 107229706 THE1B 368 + 0 368 95881 44 0 15 110 1 0 9 0 1 5 1 0 86 0 1 97 chain 112484 chr6 171115067 + 107253458 107254829 LTR12C 1709 + 0 1709 33543 286 4 13 137 0 1 24 4 0 6 9 12 355 0 325 65 0 4 481 chain 5959 chr6 171115067 + 107255504 107255634 LTR35A 463 + 0 97 185603 15 4 0 45 1 0 21 31 3 13 chain 29247 chr6 171115067 + 107259598 107259952 THE1A 353 - 0 353 87807 243 2 1 109 chain 154032 chr6 171115067 + 107259952 107261979 L1PA13 3608 + 1355 3385 24086 265 2 1 277 7 0 6 16 17 6 0 6 28 0 4 653 2 1 378 0 4 36 1 0 36 4 1 12 5 7 30 6 5 31 1 0 23 0 3 88 3 1 60 1 0 18 0 1 32 chain 129549 chr6 171115067 + 107263547 107265203 LTR12C 1709 - 0 1709 28190 54 0 131 57 1 0 163 0 4 72 0 4 107 12 9 256 78 0 15 1 0 523 1 0 4 0 1 201 7 4 104 chain 3626 chr6 171115067 + 107264269 107264312 LTR12C 1709 - 1016 1059 139059 43 chain 19030 chr6 171115067 + 107273719 107273947 AluY 311 + 63 291 130029 69 0 1 13 2 1 144 chain 10053 chr6 171115067 + 107299428 107299559 LTR8A 794 + 47 185 160308 19 0 7 100 0 1 4 1 0 7 chain 4025 chr6 171115067 + 107305347 107305394 LTR47A 437 - 388 435 207013 47 chain 3016 chr6 171115067 + 107308871 107308924 MER52D 1964 - 765 804 224713 9 14 0 30 chain 5376 chr6 171115067 + 107320072 107320135 LTR48 738 - 352 415 191239 63 chain 59427 chr6 171115067 + 107322704 107324778 PABL_A-int 1935 + 106 1284 53155 27 9 6 27 286 5 71 344 42 19 0 3 21 9 0 12 1 0 23 67 55 44 0 3 58 14 4 41 5 6 23 2 0 197 4 3 38 0 3 34 59 58 70 326 18 56 1 0 35 49 69 58 0 5 44 chain 54266 chr6 171115067 + 107333307 107334062 HSMAR1 1287 + 330 1088 56189 354 15 13 166 6 8 26 4 1 11 21 27 152 chain 21284 chr6 171115067 + 107335004 107335295 MER1B 344 - 0 303 122918 59 6 19 46 4 0 147 0 3 29 chain 22657 chr6 171115067 + 107352812 107353104 AluSp 311 - 17 311 117291 18 5 8 140 1 0 128 chain 4393 chr6 171115067 + 107373476 107373530 MER58D 378 + 324 378 202036 54 chain 7552 chr6 171115067 + 107398529 107398619 7SLRNA 320 - 67 157 173851 90 chain 49225 chr6 171115067 + 107400023 107400866 LTR1 825 + 0 825 59570 43 0 1 122 6 0 12 9 8 27 88 0 18 31 96 49 9 8 22 8 21 186 5 2 102 4 3 9 0 2 63 3 4 27 chain 65939 chr6 171115067 + 107405539 107406532 LTR12 884 + 0 869 50127 123 115 0 15 18 2 138 25 0 41 0 25 32 2 0 28 3 8 324 6 10 123 chain 1944 chr6 171115067 + 107405662 107405727 LTR12 884 + 255 336 171886 40 6 22 19 chain 23503 chr6 171115067 + 107415545 107415826 AluSp 311 + 1 283 113116 41 0 1 240 chain 3824 chr6 171115067 + 107421373 107421421 MER33 330 + 147 193 210013 8 2 0 38 chain 25001 chr6 171115067 + 107425213 107425512 AluY 311 + 0 301 104770 42 0 7 69 3 0 15 2 0 168 chain 24817 chr6 171115067 + 107441965 107442247 AluSc 308 - 17 299 105787 282 chain 2998 chr6 171115067 + 107443340 107443373 MLT1B 390 + 27 60 225061 33 chain 3299 chr6 171115067 + 107465733 107465771 MER57B1 401 + 294 332 218996 38 chain 16782 chr6 171115067 + 107470431 107470653 AluY 311 + 36 260 136162 83 3 0 13 0 1 6 13 17 104 chain 542824 chr6 171115067 + 107485372 107491808 L1PA5 6144 - 0 6144 2370 804 5 4 35 0 4 1255 0 1 83 313 0 26 0 1 429 1 0 343 0 1 454 3 4 393 0 1 929 1 0 898 1 2 326 2 16 135 chain 25062 chr6 171115067 + 107507712 107508015 L1PA8A 6298 - 7 308 104502 61 0 1 33 8 5 201 chain 6542 chr6 171115067 + 107525507 107525641 L1MB5 1630 - 333 467 180905 42 34 35 51 1 0 6 chain 10390 chr6 171115067 + 107527777 107527952 MER30 238 - 0 189 158739 70 17 17 25 4 0 7 3 21 49 chain 24249 chr6 171115067 + 107621621 107621947 LTR17 781 + 0 324 108948 59 1 0 97 1 0 26 1 0 69 6 7 66 chain 28166 chr6 171115067 + 107627386 107627741 THE1B 368 + 0 368 92412 31 0 1 8 0 15 113 1 0 4 2 1 123 1 0 72 chain 131767 chr6 171115067 + 107684461 107686013 LTR12C 1709 - 0 1709 27683 242 1 0 239 0 4 95 1 0 12 2 0 6 1 0 115 0 159 523 1 0 4 0 1 201 5 4 104 chain 77160 chr6 171115067 + 107697185 107698035 L1PA3long 6157 - 1219 2073 44879 580 0 4 270 chain 110242 chr6 171115067 + 107698037 107699250 L1PA3long 6157 + 4941 6157 34143 459 0 3 754 chain 37336 chr6 171115067 + 107746419 107746898 THE1B-int 1605 + 0 528 73043 91 0 2 197 0 22 118 0 25 73 chain 25174 chr6 171115067 + 107746898 107747185 AluY 311 + 15 303 103882 117 0 1 170 chain 24729 chr6 171115067 + 107750810 107751105 AluSp 311 + 4 299 106278 295 chain 10976 chr6 171115067 + 107768082 107768255 THE1D-int 1627 - 6 178 156289 21 6 9 13 14 9 4 0 1 115 chain 4537 chr6 171115067 + 107773109 107773166 L1MD2 1676 - 685 742 200366 57 chain 92645 chr6 171115067 + 107785569 107786590 L1PA4 6152 - 1 1025 38772 272 0 4 503 1 0 245 chain 5946 chr6 171115067 + 107802540 107802608 MER41A 554 + 399 467 185723 68 chain 19269 chr6 171115067 + 107804055 107804266 L1PA3long 6157 + 5945 6157 129325 192 0 1 19 chain 8953 chr6 171115067 + 107828818 107828930 MER30 238 + 131 238 165860 52 5 0 55 chain 10540 chr6 171115067 + 107838456 107838813 MLT1A 405 - 28 405 158092 43 1 0 12 107 132 14 4 2 38 5 47 13 59 15 61 chain 29275 chr6 171115067 + 108008478 108008839 THE1B 368 - 10 368 87667 156 2 0 33 1 0 169 chain 47178 chr6 171115067 + 108023985 108024535 MER41A 554 + 0 554 61065 155 0 1 202 0 3 193 chain 13089 chr6 171115067 + 108046110 108046398 L1MA4 2864 + 2560 2809 147884 115 3 0 18 59 31 12 23 17 12 6 4 40 chain 7273 chr6 171115067 + 108071951 108072073 MER5A1 166 - 43 166 175636 30 5 0 8 4 9 17 2 3 56 chain 19001 chr6 171115067 + 108085896 108086258 THE1B 368 + 0 368 130111 108 8 9 52 70 76 61 24 23 39 chain 120997 chr6 171115067 + 108123913 108125268 SVA_D 2077 + 0 2077 30693 434 0 157 83 0 77 167 0 488 671 chain 2916 chr6 171115067 + 108134122 108134154 MLT2B4 540 + 506 538 226774 32 chain 25362 chr6 171115067 + 108147989 108148272 AluY 311 + 4 288 102871 128 0 1 155 chain 17736 chr6 171115067 + 108150720 108150956 L1PA8 5853 + 5618 5853 133605 41 0 3 17 1 0 10 1 0 51 2 1 19 2 1 92 chain 544612 chr6 171115067 + 108175922 108181952 L1PA3long 6157 - 0 6152 2124 4157 0 1 1095 8 136 403 0 1 102 20 11 98 0 1 147 chain 21258 chr6 171115067 + 108182574 108182942 THE1B 368 - 16 368 122997 39 30 7 63 7 15 14 0 4 10 1 0 5 31 26 49 2 0 6 0 3 111 chain 471295 chr6 171115067 + 108207063 108213491 L1PA7 6471 - 3 5760 7995 9 3 0 232 1 0 292 0 3 311 1 0 123 27 1 161 0 6 40 715 0 460 0 1 515 0 3 475 1 0 282 0 4 12 0 1 22 1 0 18 15 13 27 0 5 62 0 4 480 0 13 252 0 1 717 0 4 353 0 6 160 0 3 183 0 4 180 4 12 197 0 1 68 0 12 29 chain 62446 chr6 171115067 + 108208266 108208963 L1PA2 6032 + 5333 6029 51694 533 5 0 7 0 5 140 1 0 11 chain 44079 chr6 171115067 + 108238132 108238644 MER9a1 513 + 0 512 64127 18 1 0 124 0 1 369 chain 9336 chr6 171115067 + 108239924 108240054 Tigger1 2417 + 1466 1594 163877 28 9 7 93 chain 25289 chr6 171115067 + 108241356 108241654 AluYk4 311 + 11 306 103279 120 3 0 175 chain 2806 chr6 171115067 + 108244235 108244267 LTR23 429 + 315 347 228652 32 chain 168887 chr6 171115067 + 108254906 108256987 SVA_D 2077 + 17 2056 22177 14 5 4 509 40 0 161 2 9 204 0 36 33 0 51 48 1 0 93 145 0 173 0 49 70 0 1 414 0 1 169 chain 2106 chr6 171115067 + 108256016 108256044 SVA_D 2077 + 1306 1334 76128 28 chain 407 chr6 171115067 + 108256044 108256161 SVA_D 2077 + 980 1052 48907 59 45 0 13 chain 1691 chr6 171115067 + 108256103 108256135 SVA_D 2077 + 1090 1124 147022 1 0 2 31 chain 3795 chr6 171115067 + 108274592 108275684 SVA_D 2077 + 1207 2076 48907 131 223 0 50 0 1 6 1 0 681 chain 8467 chr6 171115067 + 108274725 108274868 SVA_D 2077 + 1038 1181 99317 143 chain 2695 chr6 171115067 + 108274868 108274900 SVA_D 2077 + 1308 1340 120644 32 chain 2526 chr6 171115067 + 108274916 108274946 SVA_D 2077 + 1357 1387 120644 30 chain 26482 chr6 171115067 + 108299971 108300263 AluYk4 311 - 11 303 98112 292 chain 29427 chr6 171115067 + 108311832 108312172 LTR14A 344 + 0 344 86947 262 0 4 78 chain 41935 chr6 171115067 + 108312273 108312784 HERV1_LTRa 508 + 0 508 66709 42 1 0 33 5 0 8 0 7 381 4 0 37 chain 23673 chr6 171115067 + 108327302 108327948 MER41C 542 + 0 321 112187 49 0 1 42 0 4 135 336 6 84 chain 32362 chr6 171115067 + 108330235 108330691 THE1C-int 1605 - 1085 1605 80253 51 0 1 11 11 18 77 1 0 198 0 54 65 13 14 14 1 3 14 chain 27595 chr6 171115067 + 108335774 108336125 THE1A 353 - 0 353 94358 42 0 1 22 0 2 84 1 0 92 2 1 82 0 1 26 chain 126002 chr6 171115067 + 108336125 108337696 THE1A-int 1579 - 0 1579 29096 67 0 1 576 0 4 20 18 17 62 1 2 813 0 2 7 0 1 7 chain 22075 chr6 171115067 + 108342546 108342806 AluSc 308 - 46 308 119903 109 0 2 151 chain 27926 chr6 171115067 + 108373894 108374350 MER65D 500 + 0 494 93259 32 1 0 24 16 55 22 2 0 28 1 0 31 0 1 89 1 5 46 14 10 61 1 5 27 1 0 53 1 0 5 chain 9032 chr6 171115067 + 108382030 108382132 HY1 111 + 9 111 165427 102 chain 3715 chr6 171115067 + 108417220 108417265 L1MC3 1789 + 665 710 211702 45 chain 5803 chr6 171115067 + 108420547 108421051 L1MC3 1789 + 1244 1438 187113 67 3 0 6 344 37 15 41 42 4 1 0 23 chain 9609 chr6 171115067 + 108443946 108444061 MER2B 336 - 64 184 162541 87 0 5 28 chain 8330 chr6 171115067 + 108460448 108461003 L1MB7 1623 + 1128 1594 169219 27 0 1 29 2 0 12 5 0 11 61 40 17 9 5 15 1 0 6 115 105 22 145 0 11 33 131 34 chain 21766 chr6 171115067 + 108526713 108527049 Tigger2 2703 + 2286 2648 121153 43 0 1 7 1 2 39 6 0 27 0 3 93 0 5 12 0 5 44 11 19 10 8 10 10 0 7 25 chain 6527 chr6 171115067 + 108531344 108531424 MER20 218 - 138 218 181038 80 chain 3341 chr6 171115067 + 108541097 108541135 Tigger3b 1229 + 63 101 218215 38 chain 28277 chr6 171115067 + 108557582 108557890 AluYa5 310 - 6 309 92010 207 5 0 96 chain 103476 chr6 171115067 + 108566167 108567483 L1PA8 5853 - 10 1335 35874 20 4 1 62 1 0 19 2 1 47 8 7 7 1 0 71 2 0 42 1 0 72 0 2 6 5 6 96 0 2 262 0 4 100 5 7 18 0 4 124 0 5 162 0 1 22 1 0 97 4 3 55 chain 4127 chr6 171115067 + 108573635 108573682 5S 121 + 33 80 205547 47 chain 13316 chr6 171115067 + 108589364 108589560 MER4B 649 - 408 649 147026 42 0 42 47 1 5 71 10 9 25 chain 152603 chr6 171115067 + 108590439 108592142 SVA_D 2077 + 55 2066 24276 596 0 2 10 0 77 21 3 0 117 0 83 43 0 51 248 0 98 665 chain 23671 chr6 171115067 + 108594737 108595037 AluY 311 + 1 299 112193 59 5 10 63 8 1 165 chain 5847 chr6 171115067 + 108595535 108595612 LTR23 429 + 219 295 186710 54 1 0 22 chain 7219 chr6 171115067 + 108613969 108614059 U6 107 + 0 93 175944 47 0 3 43 chain 94359 chr6 171115067 + 108622588 108624168 MER41-int 2638 - 2 1281 38244 25 18 21 493 1 2 16 306 0 56 5 7 61 1 2 78 2 0 18 5 0 108 10 15 217 0 2 15 0 1 123 3 0 19 chain 4318 chr6 171115067 + 108658178 108658233 MER53 195 + 0 55 202989 55 chain 41469 chr6 171115067 + 108706397 108706904 MER9a3 513 + 2 513 67327 11 0 1 28 0 1 68 0 1 67 0 1 78 1 0 176 1 2 77 chain 238562 chr6 171115067 + 108709430 108712182 L1P1 4361 - 1067 4357 16850 1895 4 14 348 0 1 200 0 1 75 3 4 139 0 525 88 chain 101036 chr6 171115067 + 108718971 108720875 L1MA2 4263 - 158 1728 36503 13 4 12 16 28 21 76 34 32 134 9 5 16 8 11 5 3 0 17 6 9 76 13 12 60 1 0 5 7 3 14 2 1 294 25 32 210 0 2 119 2 3 137 10 6 35 339 11 72 7 5 49 1 0 57 chain 29423 chr6 171115067 + 108722337 108722645 AluYb8 318 - 10 318 86973 308 chain 523872 chr6 171115067 + 108732019 108738129 L1PA5 6144 + 5 6135 4779 130 17 43 145 0 3 353 0 1 22 0 4 464 10 0 1143 2 1 563 1 0 287 2 0 12 1 0 505 0 1 359 0 1 454 1 0 87 0 1 94 1 2 349 0 1 118 1 0 302 2 0 685 chain 25468 chr6 171115067 + 108750759 108751142 L1PB3 3668 - 1090 1473 102360 141 0 1 4 1 0 82 0 1 28 0 41 9 43 1 75 chain 118114 chr6 171115067 + 108770805 108772138 L1PA4 6152 - 0 1355 31767 848 0 3 424 0 19 61 chain 3427 chr6 171115067 + 108778352 108778405 L1MB8 1703 - 177 231 216627 17 4 5 32 chain 28303 chr6 171115067 + 108790708 108791077 MER83 447 - 59 438 91932 172 0 3 138 0 7 43 1 2 8 1 0 6 chain 4727 chr6 171115067 + 108828415 108828475 L1MB3 1562 - 7 66 198197 32 1 0 27 chain 489708 chr6 171115067 + 108834333 108839864 L1PA4 6152 + 3 6152 7382 1119 0 614 61 0 2 911 0 1 66 2 0 107 1 0 2645 0 1 291 0 3 328 chain 3466 chr6 171115067 + 108872428 108872496 MER21B 843 - 368 444 215887 28 17 25 23 chain 29243 chr6 171115067 + 108906225 108906545 AluYb8 318 - 0 318 87835 200 2 0 118 chain 12086 chr6 171115067 + 108948820 108949012 MER30 238 - 15 238 151851 24 0 3 63 12 22 70 7 25 16 chain 25102 chr6 171115067 + 108990047 108990336 AluYc3 301 + 0 292 104282 81 0 3 208 chain 18368 chr6 171115067 + 109004691 109004905 AluSp 311 + 84 298 131881 214 chain 28496 chr6 171115067 + 109040074 109040380 AluYa5 310 - 3 309 91199 306 chain 13310 chr6 171115067 + 109047466 109047649 MER44A 345 - 31 212 147048 49 14 12 120 chain 19614 chr6 171115067 + 109050756 109050988 AluSc 308 + 59 291 128354 232 chain 25071 chr6 171115067 + 109117342 109117634 AluSq10 312 - 20 312 104456 292 chain 86571 chr6 171115067 + 109133314 109134284 L1PA5 6144 - 3 979 40943 110 1 0 199 0 8 470 1 0 189 chain 340990 chr6 171115067 + 109134318 109138384 L1PA7 6471 - 6 4084 11872 26 2 0 5 0 2 219 0 4 34 0 10 324 0 1 212 0 4 952 0 4 797 0 1 36 27 10 174 0 1 152 1 0 856 2 0 136 1 7 65 0 1 45 chain 24390 chr6 171115067 + 109154788 109155072 AluY 311 + 19 301 108133 88 0 2 23 0 1 160 5 0 8 chain 36625 chr6 171115067 + 109163388 109164290 MLT2A1 477 + 0 465 74064 169 4 1 8 1 2 205 4 0 14 429 0 14 2 0 52 chain 10812 chr6 171115067 + 109170613 109170740 L1PA6 6164 + 6035 6162 156930 127 chain 29238 chr6 171115067 + 109211109 109211421 AluYa5 310 + 0 310 87859 132 2 0 178 chain 97995 chr6 171115067 + 109211967 109213120 L1PA7 6471 - 6 1170 37280 6 3 0 44 0 5 207 0 4 570 2 6 25 0 1 296 chain 25368 chr6 171115067 + 109213684 109213980 AluSp 311 + 4 300 102839 296 chain 81720 chr6 171115067 + 109253381 109255056 L1PA14 3548 - 83 1298 42883 10 6 0 32 0 1 8 2 1 15 1 0 5 1 0 14 5 3 34 5 1 10 1 0 55 0 1 7 7 0 47 1 0 30 354 35 19 1 0 6 2 0 17 8 4 103 10 7 35 0 1 11 25 20 13 5 0 231 1 0 115 0 2 36 2 1 31 104 4 250 chain 478672 chr6 171115067 + 109296209 109301997 L1PA7 6471 - 4 5803 7776 6 5 0 90 0 1 483 0 1 92 0 1 93 0 2 324 3 0 549 4 7 516 0 2 41 1 2 72 0 2 1083 0 4 318 8 9 137 2 1 230 0 4 259 0 1 546 0 3 374 0 4 215 12 11 27 33 24 265 chain 15404 chr6 171115067 + 109327506 109327706 L1PA6 6164 - 5 202 140188 5 3 0 136 0 7 7 7 0 42 chain 19322 chr6 171115067 + 109353245 109353481 AluSp 311 + 55 288 129175 77 3 0 156 chain 167139 chr6 171115067 + 109367324 109369317 SVA_F 1814 + 10 1814 22382 905 126 0 32 0 15 202 78 0 650 chain 11556 chr6 171115067 + 109368229 109368355 SVA_F 1814 + 979 1106 84254 21 0 1 105 chain 5445 chr6 171115067 + 109368589 109368667 SVA_F 1814 + 1037 1115 109841 78 chain 12668 chr6 171115067 + 109379500 109379673 Tigger3c 601 + 358 530 149579 47 9 8 117 chain 299465 chr6 171115067 + 109430754 109434421 L1PA7 6471 - 10 3711 13455 128 0 1 541 1 0 170 2 1 15 1 5 16 0 3 5 0 10 116 1 0 152 0 7 8 8 1 610 0 4 459 4 3 250 0 1 388 4 16 54 1 0 11 1 2 109 0 1 6 1 0 4 0 1 120 4 0 6 13 18 312 30 31 116 chain 268012 chr6 171115067 + 109454759 109457778 L1PA5 6144 + 3123 6144 15292 41 1 0 79 0 3 2898 chain 30145 chr6 171115067 + 109463405 109463764 L1PA8A 6298 + 5921 6288 84336 256 0 4 6 0 4 97 chain 183006 chr6 171115067 + 109469323 109471316 L1PA3long 6157 - 0 1994 20682 1280 0 1 713 chain 28259 chr6 171115067 + 109503074 109503401 L1PA5 6144 - 5 332 92081 327 chain 21005 chr6 171115067 + 109511703 109512044 THE1B 368 + 0 350 123892 137 0 4 10 1 2 16 1 0 21 54 59 101 chain 123870 chr6 171115067 + 109512077 109513670 THE1B-int 1605 + 15 1600 29742 415 37 20 258 40 49 198 4 5 218 1 0 422 chain 19017 chr6 171115067 + 109513675 109513977 THE1B 368 + 0 306 130072 15 15 14 140 1 0 21 7 10 9 1 5 25 2 1 66 chain 14472 chr6 171115067 + 109514337 109514527 L1PA16 3655 - 62 249 142978 15 3 0 172 chain 6008 chr6 171115067 + 109531750 109531871 L1MA5 2750 - 2606 2724 185163 43 34 31 44 chain 3715 chr6 171115067 + 109535419 109535464 MER6B 211 + 152 197 211705 45 chain 560168 chr6 171115067 + 109566421 109572450 L1PA2 6032 - 0 6028 344 2989 1 0 3039 chain 2820 chr6 171115067 + 109574721 109574751 MER34A 573 - 61 91 228471 30 chain 80272 chr6 171115067 + 109589328 109590377 MER11C 1089 + 0 1063 43482 246 0 9 62 0 4 65 1 0 146 45 44 15 10 8 70 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 143 chain 3258 chr6 171115067 + 109596680 109596721 L1MB7 1623 - 1550 1590 219798 5 1 0 35 chain 3453 chr6 171115067 + 109601372 109601410 L1ME1 1623 + 1232 1270 216128 38 chain 3339 chr6 171115067 + 109612562 109612601 MER50B 698 + 529 568 218254 39 chain 8346 chr6 171115067 + 109626697 109626797 HY3 101 + 1 101 169141 100 chain 13541 chr6 171115067 + 109642522 109642786 L1MC1 2226 + 1881 2122 146206 8 6 0 28 1 0 63 3 0 62 21 14 25 3 0 5 2 1 16 3 1 18 chain 83041 chr6 171115067 + 109685334 109686392 L1PA6 6164 + 5072 6162 42317 71 0 1 171 0 5 90 1 4 280 0 1 130 1 0 35 1 5 28 17 15 24 4 14 51 6 14 136 1 4 11 chain 26411 chr6 171115067 + 109712208 109712519 AluY 311 + 1 311 98368 23 2 0 108 0 1 178 chain 26084 chr6 171115067 + 109728440 109728734 AluYk4 311 - 10 311 99693 281 0 7 13 chain 85674 chr6 171115067 + 109733554 109735031 L1MA2 4263 + 2872 4114 41281 30 0 1 265 0 6 163 0 67 51 0 4 14 307 3 7 0 8 75 1 0 7 1 2 12 4 0 75 1 0 49 0 3 73 1 0 4 0 1 14 3 0 12 8 6 134 1 0 6 2 1 93 7 0 47 1 0 9 chain 21687 chr6 171115067 + 109737722 109738084 Tigger2 2703 - 1496 1860 121442 26 10 11 26 39 41 242 7 6 12 chain 42579 chr6 171115067 + 109745726 109746256 MER41A 554 + 0 534 65927 341 0 5 51 1 0 137 chain 31317 chr6 171115067 + 109782165 109782548 L1PA6 6164 - 2 383 81961 8 2 0 41 0 4 272 4 0 56 chain 44554 chr6 171115067 + 109799141 109799692 PABL_A 660 + 25 635 63521 11 0 1 44 0 9 144 1 45 36 0 5 315 chain 4628 chr6 171115067 + 109806929 109806985 Tigger3c 601 + 255 311 199326 56 chain 44224 chr6 171115067 + 109833185 109833730 MER41A 554 + 0 554 63915 53 0 1 373 0 8 119 chain 535502 chr6 171115067 + 109855818 109861923 L1PA5 6144 - 12 6120 3516 68 5 0 67 3 4 832 0 1 527 6 5 283 0 4 1145 2 1 42 0 1 1133 0 1 466 0 2 1526 chain 28519 chr6 171115067 + 109870862 109871166 AluYg6 310 - 6 310 91104 304 chain 433630 chr6 171115067 + 109872990 109878843 L1PA8A 6298 - 11 5622 9224 87 10 18 89 0 1 226 25 41 29 0 1 33 27 28 160 1 4 80 2 1 262 4 3 290 8 9 119 0 1 111 0 2 499 0 1 302 0 1 10 0 1 42 0 4 289 345 21 73 3 12 44 4 5 15 21 20 259 0 1 331 0 4 255 1 2 317 5 0 144 0 5 186 0 3 429 0 24 183 0 1 68 1 0 128 30 31 306 chain 287697 chr6 171115067 + 109887965 109891648 L1PA5 6144 + 2813 6142 14178 784 352 3 4 0 1 1527 0 1 899 0 1 83 4 0 19 4 0 7 chain 27803 chr6 171115067 + 109888755 109889096 L1PA5 6144 + 3605 6144 93679 11 0 2198 330 chain 14845 chr6 171115067 + 109894177 109894415 MER45B 1037 + 761 993 141795 81 5 0 46 30 29 76 chain 131314 chr6 171115067 + 109896097 109898032 L1PB1 5432 - 153 2102 27797 42 1 0 16 2 1 51 3 1 9 11 7 6 1 0 12 1 0 20 3 0 11 1 0 21 1 0 5 0 5 7 4 30 149 0 1 32 20 20 203 5 1 20 9 13 144 0 13 59 2 3 107 4 6 65 0 1 5 11 0 182 0 1 47 0 1 92 8 5 116 20 13 158 17 16 232 chain 27705 chr6 171115067 + 109909277 109909570 AluYg6 310 - 16 309 94025 293 chain 37767 chr6 171115067 + 109913048 109913562 MER75 514 - 0 513 72468 16 1 0 49 7 9 325 14 12 102 chain 228122 chr6 171115067 + 109914509 109917213 L1PA7 6471 + 3748 6467 17407 12 0 1 21 0 1 778 1 0 257 0 4 136 11 13 215 0 1 115 0 1 312 1 4 170 1 6 664 2 0 8 chain 7781 chr6 171115067 + 109918010 109918107 L1P5 443 - 91 188 172410 97 chain 11108 chr6 171115067 + 109918895 109919077 MER50 708 - 31 194 155776 115 6 2 12 14 0 11 1 0 23 chain 543457 chr6 171115067 + 109919290 109925413 L1PA5 6144 - 12 6141 2272 1820 1 0 25 1 0 1012 0 2 507 0 1 33 3 0 349 0 4 314 0 2 511 0 2 1547 chain 3174 chr6 171115067 + 109932894 109932927 MLT1J 494 + 257 290 221446 33 chain 82365 chr6 171115067 + 109942218 109943108 L1PA2 6032 + 5142 6032 42600 890 chain 153057 chr6 171115067 + 109959862 109961769 L1PA6 6164 - 5 6164 24223 843 0 4 503 0 1 149 25 4272 124 0 1 17 1 0 245 chain 505069 chr6 171115067 + 109966293 109972439 L1PA4 6152 + 10 6146 6534 110 7 21 50 70 69 142 28 28 55 1 2 357 12 7 27 7 3 74 25 0 219 22 13 49 0 2 6 2 0 171 2 7 35 0 1 521 0 1 1191 2 1 1177 0 8 944 0 5 840 chain 100035 chr6 171115067 + 109972459 109973642 L1P1 4361 + 2819 4018 36769 12 0 1 4 1 0 335 1 0 179 1 17 564 1 2 85 chain 4994 chr6 171115067 + 109980038 109980098 MSTC 436 + 374 434 195204 60 chain 190683 chr6 171115067 + 109988621 109990853 L1PA5 6144 - 14 2263 19983 119 40 40 401 0 2 269 1 5 685 0 2 256 0 8 350 11 12 100 chain 12027 chr6 171115067 + 109999862 109999999 L1P3 4156 + 0 137 152086 137 chain 521948 chr6 171115067 + 110000031 110006943 L1PA7 6471 + 169 6469 4966 241 0 2 173 0 1 104 13 17 74 3 1 453 0 4 863 0 2 165 12 17 57 0 1 124 0 1 169 1 3 455 0 4 83 0 4 244 0 1 71 311 0 260 0 1 437 0 1 59 1 0 598 0 1 336 0 1 426 3 0 11 332 0 76 1 0 29 0 5 564 0 1 145 3 0 15 chain 9545 chr6 171115067 + 110015382 110015507 MER85 139 - 0 135 162857 29 4 14 92 chain 122674 chr6 171115067 + 110030547 110032317 L1PA13 3608 - 120 2396 30174 20 1 0 20 2 0 5 2 0 47 2 0 5 1 0 56 1 0 60 3 1 87 0 3 24 1 0 28 2 0 138 4 5 298 0 2 40 7 10 193 0 1 109 2 1 65 47 23 10 0 1 248 0 8 9 49 46 59 6 533 16 6 8 97 chain 146808 chr6 171115067 + 110046307 110048105 L1PA8 5853 - 6 1792 25044 54 9 7 26 2 1 18 2 1 45 0 1 5 1 0 10 1 0 71 2 0 46 1 0 148 4 3 159 0 6 237 2 0 627 14 6 100 0 1 214 chain 100350 chr6 171115067 + 110065850 110067034 L1PA7 6471 - 6 1191 36674 238 15 14 528 2 0 68 0 3 63 0 1 270 chain 16374 chr6 171115067 + 110067034 110067223 L1PA7 6471 + 4889 5078 136573 189 chain 19141 chr6 171115067 + 110067223 110067435 L1PA7 6471 + 5085 5297 129704 212 chain 4080 chr6 171115067 + 110072498 110073001 L1P3 4156 - 70 573 60177 503 chain 460623 chr6 171115067 + 110073043 110078289 L1PA3long 6157 - 0 6157 8379 1143 0 1 169 104 0 486 0 4 1084 0 5 94 2 1 756 0 1 903 0 1 408 0 1004 97 chain 8536 chr6 171115067 + 110074368 110074458 5S 121 - 31 121 168098 90 chain 1420 chr6 171115067 + 110078290 110078465 L1P3 4156 - 573 752 60177 38 0 4 137 chain 52298 chr6 171115067 + 110078472 110079084 L1PA7 6471 + 4111 4731 57430 170 0 4 386 0 4 56 chain 117775 chr6 171115067 + 110079091 110080494 L1PA7 6471 + 4737 6155 31865 220 0 3 658 1 8 56 2 0 103 9 11 60 0 3 151 0 2 143 chain 9404 chr6 171115067 + 110080504 110080629 L1PA7 6471 + 6344 6468 163537 112 1 0 12 chain 22497 chr6 171115067 + 110124824 110125075 L1PA5 6144 - 1 252 118041 251 chain 5039 chr6 171115067 + 110125090 110125143 L1PA5 6144 + 5829 5882 194736 53 chain 106399 chr6 171115067 + 110127828 110129146 L1PA7 6471 - 1 1344 35153 18 1 0 131 19 37 88 0 1 63 0 1 103 11 6 318 3 2 81 1 4 425 0 1 17 0 8 39 chain 25674 chr6 171115067 + 110139405 110139702 AluSp 311 - 14 311 101390 297 chain 22727 chr6 171115067 + 110151185 110151539 THE1B 368 + 0 368 116946 35 0 5 64 16 27 38 1 0 23 3 0 9 0 1 5 3 7 18 1 0 10 1 0 64 7 6 56 chain 28447 chr6 171115067 + 110151746 110152100 THE1A 353 + 0 353 91386 110 1 0 243 chain 131286 chr6 171115067 + 110152100 110153663 THE1A-int 1579 + 0 1579 27802 113 0 3 40 13 16 1006 0 10 391 chain 27192 chr6 171115067 + 110153663 110154020 THE1A 353 + 0 353 95618 111 1 0 80 0 3 39 14 8 112 chain 63125 chr6 171115067 + 110163769 110164558 L1PB1 5432 - 760 1577 51391 50 0 1 281 0 28 282 0 3 5 3 0 38 1 0 129 chain 44450 chr6 171115067 + 110164559 110166433 L1PB1 5432 + 4685 5422 63635 69 742 0 51 0 1 122 0 3 65 7 2 100 381 16 24 3 2 4 1 0 14 8 4 6 2 0 12 0 1 39 2 1 16 1 0 45 1 0 14 1 0 4 61 46 24 1 0 21 1 0 13 1 0 18 chain 15894 chr6 171115067 + 110164824 110165019 AluY 311 + 99 288 138672 19 7 0 14 0 1 155 chain 34081 chr6 171115067 + 110166491 110166869 L1PA5 6144 + 5766 6144 77496 378 chain 237264 chr6 171115067 + 110170479 110173296 HERVL-int 5654 + 2762 5654 16920 1152 0 4 347 4 70 1095 0 1 28 1 4 139 0 1 51 chain 33775 chr6 171115067 + 110173296 110173761 MLT2A1 477 + 0 477 77978 142 0 1 25 1 5 212 46 53 39 chain 31933 chr6 171115067 + 110176977 110177387 LTR7 482 - 0 482 80963 116 0 1 70 0 31 39 0 1 109 8 46 29 0 1 39 chain 297088 chr6 171115067 + 110178648 110182368 HERVH-int 3825 - 0 3825 13581 60 8 9 156 3 8 147 19 1 106 8 218 16 0 1 22 9 11 1049 0 10 295 6 36 164 4 0 46 1 0 691 1 0 62 65 0 18 2 1 15 2 0 27 1 0 7 21 0 9 23 0 9 3 0 13 1 0 14 7 1 14 4 0 9 2 1 9 1 0 24 0 1 4 1 0 11 1 0 530 chain 31682 chr6 171115067 + 110182370 110182782 LTR7 482 - 0 482 81349 204 4 35 18 0 1 109 8 46 69 chain 34964 chr6 171115067 + 110190495 110190964 MER4A1 472 - 0 472 76239 68 11 13 129 21 0 10 1 22 55 0 1 174 chain 22109 chr6 171115067 + 110193216 110193508 L1PA8 5853 - 0 285 119743 48 0 1 44 1 0 16 1 0 49 5 2 11 1 0 74 2 0 40 chain 42189 chr6 171115067 + 110198863 110199348 LTR15 485 + 0 485 66407 485 chain 45048 chr6 171115067 + 110199381 110201318 MER61-int 3695 + 1 1178 34989 29 4 0 16 1 0 120 1 2 104 1 0 138 1 2 100 0 1 24 1 8 40 8 7 50 3 1 399 766 0 80 0 5 51 chain 1624 chr6 171115067 + 110201327 110201464 L1PA4 6152 - 12 155 125370 131 0 6 6 chain 107982 chr6 171115067 + 110201583 110202933 LTR12C 1709 - 0 1709 34724 155 0 101 225 0 4 106 3 1 5 1 0 100 0 278 205 0 2 35 4 5 220 0 2 126 26 0 139 chain 1541 chr6 171115067 + 110202933 110203063 L1PA4 6152 - 249 380 125370 108 0 1 22 chain 6000 chr6 171115067 + 110203722 110203980 MER61-int 3695 + 1255 1513 34989 258 chain 16545 chr6 171115067 + 110204002 110204663 Tigger3b 1229 - 607 948 136809 31 1 0 10 0 2 5 9 8 28 319 6 28 8 5 53 0 1 36 18 16 42 1 0 4 0 1 9 20 18 24 1 0 14 chain 16129 chr6 171115067 + 110215460 110215753 LTR4 552 - 8 294 137969 48 11 12 33 0 1 39 26 18 50 4 5 42 4 5 14 3 0 19 chain 5261 chr6 171115067 + 110216634 110216756 MER57-int 2662 + 2533 2643 192406 10 1 0 4 2 1 9 3 0 26 1 0 6 12 9 27 3 0 18 chain 58738 chr6 171115067 + 110216896 110217666 MER4E1 777 - 7 777 53561 215 7 9 67 0 1 208 0 2 100 29 23 127 0 1 17 chain 2763 chr6 171115067 + 110218290 110218328 MLT1B 390 - 59 95 229288 5 2 0 31 chain 45987 chr6 171115067 + 110233098 110233721 LTR71B 605 - 0 605 62055 116 11 5 130 2 0 6 11 6 79 1 0 111 10 0 7 2 8 137 chain 28469 chr6 171115067 + 110256546 110256924 THE1C 375 - 0 375 91308 25 1 0 155 11 12 59 3 0 124 chain 25187 chr6 171115067 + 110259492 110259783 L1PA5 6144 + 5849 6143 103816 53 0 3 238 chain 23410 chr6 171115067 + 110272029 110272381 MER4B 649 - 259 649 113598 31 0 15 26 6 9 15 1 0 4 4 5 63 0 23 75 7 6 93 2 0 25 chain 43958 chr6 171115067 + 110278724 110279366 L1PA16 3655 + 2980 3618 64255 198 0 1 15 0 1 9 1 0 8 0 18 61 2 0 7 0 5 267 59 33 15 chain 22000 chr6 171115067 + 110286893 110287222 MER1B 344 + 0 344 120227 22 13 20 115 0 2 94 26 32 59 chain 51636 chr6 171115067 + 110309404 110310031 L1PA8A 6298 - 2121 2746 57753 170 0 1 132 4 1 321 chain 173407 chr6 171115067 + 110310031 110312124 L1PA8A 6298 + 4190 6291 21663 484 2 0 814 0 3 85 1 0 4 0 1 602 1 8 100 chain 13726 chr6 171115067 + 110316767 110317112 L1PB1 5432 + 5108 5427 145524 30 1 0 9 1 0 10 6 2 8 2 0 53 2 1 10 6 5 38 81 70 26 2 1 20 1 0 13 1 0 18 2 0 5 chain 34868 chr6 171115067 + 110346549 110347010 LTR2 463 - 0 463 76384 88 14 15 56 1 0 42 7 9 253 chain 13369 chr6 171115067 + 110347119 110347358 L1PA16 3655 + 3403 3619 146820 12 5 6 157 9 6 8 2 0 4 14 0 7 5 0 16 chain 3308 chr6 171115067 + 110351968 110352008 MADE1 96 + 3 43 218802 40 chain 4838 chr6 171115067 + 110361994 110362053 MER84 505 - 401 460 196905 59 chain 27823 chr6 171115067 + 110364037 110364428 MER51E 476 + 0 432 93620 17 0 1 4 1 0 110 1 36 121 4 13 102 1 0 11 2 0 17 chain 124972 chr6 171115067 + 110367343 110368753 L1PA4 6152 + 4727 6137 29401 1410 chain 7037 chr6 171115067 + 110407631 110407726 L1PA8 5853 + 5760 5853 177198 59 4 2 32 chain 4426 chr6 171115067 + 110432817 110432869 L1MB8 1703 + 1465 1521 201632 25 0 4 27 chain 494255 chr6 171115067 + 110437264 110443389 L1PA6 6164 + 0 6156 7156 273 4 2 119 17 18 37 8 0 15 43 60 45 1 0 218 0 17 131 1 26 111 8 4 206 1 3 150 12 11 594 0 1 219 19 11 54 22 0 417 5 6 421 0 6 4 1 0 963 6 11 10 3 0 52 1 0 155 0 4 758 1 2 181 0 3 673 1 0 5 1 2 41 2 1 116 chain 26583 chr6 171115067 + 110445157 110445702 MER61D 487 + 0 487 97715 145 0 60 49 161 46 25 0 1 5 2 0 74 11 10 65 1 0 7 chain 15275 chr6 171115067 + 110453788 110454101 L1PB1 5432 - 36 318 140555 4 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 19 7 21 1 0 44 1 0 15 2 1 52 16 10 12 2 0 7 2 1 24 chain 168469 chr6 171115067 + 110465061 110466948 L1PA4 6152 - 395 2287 22224 876 6 11 1005 chain 34099 chr6 171115067 + 110466953 110467337 L1PA4 6152 + 5761 6143 77480 109 1 0 22 1 0 251 chain 279436 chr6 171115067 + 110476755 110479738 L1HS 6032 - 0 2983 14664 2983 chain 18143 chr6 171115067 + 110493706 110493968 L1PB4 2604 + 2302 2568 132486 53 3 7 10 10 11 170 1 0 15 chain 26357 chr6 171115067 + 110506436 110506714 AluYa5 310 - 2 280 98586 278 chain 37101 chr6 171115067 + 110557666 110558209 L1PA11 4918 - 340 870 73382 11 2 0 13 1 0 15 13 9 10 8 3 9 4 0 20 1 0 16 2 0 78 2 1 56 1 6 80 0 1 55 0 1 146 chain 5259 chr6 171115067 + 110578599 110578691 MER3 215 - 57 160 192416 17 6 0 9 7 24 53 chain 537937 chr6 171115067 + 110580206 110586324 L1PA4 6152 + 23 6141 3160 776 0 1 954 1 0 434 1 0 139 0 1 96 0 1 1091 1 0 173 1 0 2349 0 1 102 chain 71263 chr6 171115067 + 110593552 110594505 L1PB2 3958 - 123 1063 47822 60 1 0 93 2 1 64 1 0 25 0 1 8 1 0 4 0 1 30 4 3 93 4 0 13 2 0 41 4 1 27 1 0 7 0 3 51 2 0 385 1 0 29 chain 43255 chr6 171115067 + 110594598 110595213 L1PB2 3958 + 3246 3838 65113 62 2 0 55 1 0 11 8 0 65 2 0 12 4 0 94 1 0 72 1 0 64 8 7 68 3 1 18 8 7 56 chain 21963 chr6 171115067 + 110607865 110608199 MLT2A1 477 + 0 379 120384 27 9 24 99 0 5 14 4 1 9 0 1 41 25 52 106 chain 277190 chr6 171115067 + 110624093 110627512 L1PA7 6471 + 25 6463 14796 172 0 1 214 1 0 501 0 3 5 3 0 940 4 17 145 7 6 73 2 0 73 0 1 50 0 1 84 2 2988 322 1 0 79 0 2 367 0 1 129 0 19 245 chain 24458 chr6 171115067 + 110630668 110631023 THE1B 368 - 0 368 107766 169 6 8 16 5 4 19 0 7 92 8 13 40 chain 25376 chr6 171115067 + 110633963 110634335 MER51B 395 - 0 395 102802 13 1 0 137 1 0 129 10 16 34 7 26 40 chain 4740 chr6 171115067 + 110645701 110645753 MER66C 541 - 118 170 198023 52 chain 3267 chr6 171115067 + 110647826 110647863 LTR33 499 - 73 110 219637 37 chain 4429 chr6 171115067 + 110657496 110657615 MLT1I 406 + 294 400 201596 22 0 1 13 49 35 35 chain 22821 chr6 171115067 + 110698251 110698596 THE1B 368 + 14 367 116489 154 2 1 23 41 51 88 1 0 36 chain 491545 chr6 171115067 + 110699565 110706069 L1PA8A 6298 + 28 6291 7292 6 6 0 6 1 0 18 2 1 5 3 0 6 2 0 8 10 5 18 3 0 18 62 29 9 4 3 9 2 1 7 1 0 10 2 0 14 79 68 39 1 0 19 9 3 78 2 0 8 0 1 5 1 0 6 9 7 131 4 10 151 4 0 393 0 6 1092 1 0 292 1 0 850 1 0 4 0 2 6 11 6 27 209 0 12 1 5 25 1 2 71 0 7 326 0 1 16 1 2 203 8 14 330 1 0 211 0 1 400 0 4 42 0 1 411 2 1 80 0 2 8 2 6 569 0 17 119 chain 17937 chr6 171115067 + 110761274 110761488 7SLRNA 320 - 88 302 133014 214 chain 4358 chr6 171115067 + 110775692 110775757 MER41B 635 + 480 546 202471 20 8 9 37 chain 66631 chr6 171115067 + 110778659 110779668 LTR13 1007 + 0 1007 49814 42 0 2 14 0 1 14 27 21 227 79 80 229 1 0 56 2 1 12 1 0 7 1 5 101 5 6 143 0 2 6 2 0 6 3 1 31 chain 25174 chr6 171115067 + 110783098 110783449 THE1B 368 - 13 368 103885 26 1 2 154 2 1 124 4 9 19 0 1 6 2 0 13 chain 13045 chr6 171115067 + 110792335 110792537 Tigger3a 397 + 54 309 148057 21 31 84 150 chain 4303 chr6 171115067 + 110794167 110794280 MIR 256 + 12 128 203176 39 51 54 23 chain 41279 chr6 171115067 + 110809250 110809798 MER41A 554 + 0 554 67562 92 0 1 354 23 28 79 chain 3694 chr6 171115067 + 110811898 110811941 MER41-int 2638 + 112 155 212025 43 chain 44867 chr6 171115067 + 110820376 110820886 MER9a1 513 + 1 513 63214 449 1 3 60 chain 383516 chr6 171115067 + 110822232 110826761 HERVK9-int 4720 + 54 4720 10655 4 1 0 66 1 0 9 1 0 29 1 0 1453 2 0 1692 21 20 187 0 21 151 10 9 647 0 96 80 0 28 174 chain 43446 chr6 171115067 + 110826768 110827271 MER9a1 513 + 7 513 64875 161 0 3 342 chain 10517 chr6 171115067 + 110852559 110852780 AluJb 308 + 10 230 158174 126 64 64 10 6 5 15 chain 16449 chr6 171115067 + 110877323 110877544 MER30 238 - 2 238 137069 45 3 0 64 4 20 11 0 2 94 chain 26966 chr6 171115067 + 110895205 110895523 AluYb8 318 - 1 318 96383 190 0 1 63 2 0 63 chain 212449 chr6 171115067 + 110898939 110901573 L1PA10 4194 + 973 3642 18330 183 1 0 490 0 2 30 0 2 13 4 7 168 9 14 202 1 0 140 4 0 268 20 0 51 0 4 83 1 0 32 0 3 32 0 3 83 0 11 342 1 0 27 0 10 235 0 20 214 chain 52307 chr6 171115067 + 110905945 110906544 L1PA6 6164 + 5557 6156 57424 599 chain 7612 chr6 171115067 + 110920478 110920573 MSTD 398 + 0 99 173461 78 0 4 17 chain 78933 chr6 171115067 + 110921917 110922795 L1PA5 6144 + 5252 6130 44091 878 chain 24086 chr6 171115067 + 111015581 111015977 L1PB3 3668 + 79 475 109823 23 2 0 5 12 7 11 1 0 5 1 0 5 19 16 40 9 12 84 0 8 163 0 1 16 chain 21320 chr6 171115067 + 111026936 111027210 L1PA7 6471 + 6188 6470 122799 28 0 1 96 8 15 142 chain 3320 chr6 171115067 + 111030135 111030170 L1P3 4156 + 4069 4104 218567 35 chain 13824 chr6 171115067 + 111030559 111030719 L1PA7 6471 + 6310 6470 145163 160 chain 3047 chr6 171115067 + 111045048 111045080 U2 167 + 0 32 224048 32 chain 3016 chr6 171115067 + 111052397 111052445 MER5A1 166 + 95 135 224714 15 8 0 25 chain 81053 chr6 171115067 + 111063302 111064350 MER11A 1151 + 0 1151 43163 77 0 8 77 0 1 56 0 2 8 1 0 65 0 11 21 0 2 204 0 13 137 23 27 37 0 4 69 0 1 14 1 59 101 0 1 90 1 0 66 chain 26531 chr6 171115067 + 111091443 111091798 THE1A 353 - 0 353 97927 259 5 4 35 10 11 31 2 0 13 chain 119266 chr6 171115067 + 111091798 111093333 THE1A-int 1579 - 0 1579 31307 204 0 1 32 0 1 33 0 1 256 0 10 141 0 1 242 0 1 4 1 0 4 9 12 107 21 31 300 5 8 112 0 14 64 chain 20558 chr6 171115067 + 111094325 111094562 AluSc 308 + 58 295 125442 237 chain 72095 chr6 171115067 + 111121443 111122384 L1PA17 2846 + 647 1594 47439 83 1 0 239 0 4 170 5 6 10 1 0 128 0 1 136 4 6 164 chain 21111 chr6 171115067 + 111145135 111145575 L1PB3 3668 + 3207 3614 123524 84 1 0 97 15 14 48 4 0 10 52 35 8 1 0 16 15 14 33 22 16 13 9 7 12 chain 36985 chr6 171115067 + 111162417 111162902 LTR10E 629 + 0 485 73527 164 0 2 105 6 5 15 9 8 48 1 0 5 0 1 132 chain 24560 chr6 171115067 + 111189976 111190277 AluSp 311 + 0 297 107191 120 5 0 110 0 1 66 chain 4868 chr6 171115067 + 111222082 111222140 MER41A 554 + 408 466 196612 58 chain 525357 chr6 171115067 + 111225545 111231952 L1PA5 6144 + 0 6143 4645 120 1 15 18 3 15 308 0 13 212 0 1 244 0 4 220 9 1 63 0 5 1152 0 1 1880 1 0 77 0 4 660 0 1 558 0 2 194 313 0 221 6 0 7 4 11 136 chain 37231 chr6 171115067 + 111237957 111238446 MER9a3 513 + 1 501 73196 17 0 2 87 6 7 142 1 0 38 2 1 26 0 7 92 0 2 11 0 1 67 chain 393969 chr6 171115067 + 111239084 111243806 HERVK9-int 4720 + 71 4720 10322 53 1 0 8 1 0 30 1 0 241 59 7 78 0 12 455 0 1 158 20 0 208 1 2 69 0 2 220 2 0 701 0 3 1220 1 0 5 0 1 664 14 1 337 18 16 157 chain 23920 chr6 171115067 + 111262060 111262347 AluY 311 + 24 311 110805 287 chain 11256 chr6 171115067 + 111264454 111264603 Tigger4b 360 - 67 218 155205 132 1 3 16 chain 23355 chr6 171115067 + 111265258 111265554 AluSp 311 + 0 302 113900 70 4 10 222 chain 12167 chr6 171115067 + 111274447 111274600 MER41B 635 + 481 635 151548 27 0 1 126 chain 25308 chr6 171115067 + 111274690 111275017 MER41-int 2638 + 1366 2635 103180 122 0 942 205 chain 40425 chr6 171115067 + 111275027 111275878 MER41B 635 + 0 547 68697 128 1 2 313 0 1 4 25 20 46 301 0 33 chain 23527 chr6 171115067 + 111286029 111286328 AluSp 311 - 5 303 112974 32 0 1 161 3 1 103 chain 5746 chr6 171115067 + 111297259 111297331 MLT1D 503 - 19 92 187678 23 0 1 49 chain 6408 chr6 171115067 + 111312374 111312453 MER2 342 - 127 206 181956 79 chain 7288 chr6 171115067 + 111319865 111319982 MER50 708 + 30 140 175522 14 15 9 5 1 0 82 chain 7984 chr6 171115067 + 111329485 111329579 U6 107 - 13 107 171141 94 chain 137047 chr6 171115067 + 111337886 111339444 SVA_C 1631 - 1 1631 26631 626 1 49 76 22 24 782 1 26 9 0 2 11 0 1 6 7 1 17 chain 5754 chr6 171115067 + 111374231 111374351 MER51A 677 - 395 478 187614 28 37 0 55 chain 9107 chr6 171115067 + 111374376 111374491 MER51A 677 - 249 366 165037 62 0 2 53 chain 4399 chr6 171115067 + 111378865 111378935 MER2B 336 + 245 314 201941 27 7 6 36 chain 28240 chr6 171115067 + 111382594 111382947 THE1A 353 - 0 353 92154 182 0 1 63 1 0 107 chain 197478 chr6 171115067 + 111383935 111386319 L1PA7 6471 - 1 2377 19390 10 2 0 833 31 25 124 0 5 315 7 8 195 6 0 861 chain 18761 chr6 171115067 + 111416761 111417069 THE1B 368 + 0 306 130795 79 8 0 34 0 1 53 1 0 4 0 1 18 17 24 10 21 19 63 chain 23044 chr6 171115067 + 111419226 111419523 AluSp 311 + 0 296 115425 28 5 4 264 chain 3737 chr6 171115067 + 111422650 111422694 MER46C 351 - 133 177 211361 44 chain 17843 chr6 171115067 + 111429525 111429772 HSMAR2 1300 + 1019 1273 133265 154 0 1 14 4 6 55 2 6 18 chain 4017 chr6 171115067 + 111448148 111448192 MADE1 96 - 50 94 207115 44 chain 367566 chr6 171115067 + 111454301 111458636 HERV17-int 4347 + 12 4347 11165 15 6 5 45 2 1 35 2 0 25 3 2 519 1 0 92 0 3 714 2 0 117 0 1 319 1 10 895 15 2 127 18 0 993 16 27 176 0 2 80 0 12 103 0 1 14 chain 28910 chr6 171115067 + 111458949 111459276 LTR17 781 + 0 327 89417 327 chain 22877 chr6 171115067 + 111467661 111467951 AluY 311 + 0 294 116199 42 11 15 75 0 1 17 2 1 143 chain 28977 chr6 171115067 + 111484349 111484653 AluYa5 310 - 5 309 89101 304 chain 113272 chr6 171115067 + 111511098 111513798 THE1B-int 1605 - 5 1605 33291 301 3 0 415 0 1 179 16 0 31 0 8 9 9 1 100 9 0 46 1138 6 42 0 64 55 0 1 61 1 7 65 0 41 11 54 0 138 4 5 13 chain 91752 chr6 171115067 + 111512225 111513334 L1PA7 6471 - 3 1114 39050 160 15 14 580 0 3 8 4 1 42 0 4 35 1 0 264 chain 4816 chr6 171115067 + 111517864 111517934 U3 216 + 1 68 197157 26 7 0 28 0 4 9 chain 9897 chr6 171115067 + 111517960 111518086 MER2 342 + 153 279 161081 126 chain 113005 chr6 171115067 + 111555561 111557578 L1PB1 5432 + 3760 5424 33374 50 0 1 211 1 0 4 10 4 10 9 0 129 1 0 36 0 2 11 0 1 168 6 10 78 0 4 149 3 0 42 3 4 123 0 2 17 19 20 95 317 3 102 10 11 56 1 2 9 9 0 11 0 3 10 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 44 1 0 16 2 0 6 16 6 18 9 6 14 2 0 24 1 0 21 1 0 13 7 6 14 chain 3582 chr6 171115067 + 111572140 111572226 MER58A 224 - 137 224 213955 35 33 34 18 chain 73510 chr6 171115067 + 111576299 111577258 LTR5_Hs 974 - 0 974 46780 103 20 18 11 1 0 8 8 15 163 1 0 188 0 1 65 0 10 102 0 1 289 chain 12656 chr6 171115067 + 111579711 111579854 L1PA4 6152 + 6002 6152 149617 137 0 7 6 chain 7682 chr6 171115067 + 111604057 111604163 THE1B 368 - 261 368 173034 8 1 0 29 4 6 64 chain 15234 chr6 171115067 + 111604163 111605369 THE1B-int 1605 - 0 1238 36478 401 5 5 57 0 4 54 0 1 212 0 1 217 22 24 108 0 2 5 0 2 5 14 9 31 9 34 66 chain 106041 chr6 171115067 + 111608807 111610129 Harlequin-int 5206 - 2948 5071 35246 291 0 6 250 0 5 41 0 778 341 0 2 59 3 0 119 5 10 47 1 3 15 0 5 16 9 12 113 2 0 10 chain 30614 chr6 171115067 + 111611347 111611825 LTR2B 499 - 0 490 83179 180 1 0 12 0 1 42 0 5 11 6 1 106 4 16 8 0 7 15 13 17 13 21 1 15 0 10 25 1 0 5 chain 4270 chr6 171115067 + 111611832 111612170 THE1B-int 1605 - 1238 1600 36478 20 13 14 133 0 6 84 24 25 22 2 15 33 0 3 7 chain 39064 chr6 171115067 + 111629001 111629445 L1PA6 6164 - 2 454 70648 13 3 0 18 1 12 409 chain 13737 chr6 171115067 + 111629566 111629787 MER47A 366 - 130 353 145481 18 12 14 128 13 14 4 1 0 45 chain 13722 chr6 171115067 + 111636948 111637158 MER1B 344 + 120 344 145535 60 8 6 66 1 0 5 13 30 57 chain 23407 chr6 171115067 + 111639772 111640059 AluSp 311 - 15 311 113611 8 5 0 82 3 4 146 0 13 43 chain 23020 chr6 171115067 + 111641278 111641568 AluSp 311 - 19 311 115526 180 14 16 96 chain 10064 chr6 171115067 + 111719125 111719363 L1MA4A 3247 - 2951 3123 160253 35 1 0 52 12 4 11 76 19 51 chain 3316 chr6 171115067 + 111719243 111719279 L1MA4A 3247 + 209 245 218662 36 chain 6102 chr6 171115067 + 111729859 111729934 Charlie1a 1436 - 36 111 184393 75 chain 10121 chr6 171115067 + 111747659 111747788 MER85 139 - 0 139 159990 30 0 10 99 chain 11402 chr6 171115067 + 111761566 111761722 HSMAR1 1287 + 1114 1273 154689 43 7 10 106 chain 16422 chr6 171115067 + 111814808 111815021 L1PA8 5853 - 0 209 137147 93 1 0 16 1 0 56 2 1 5 1 0 38 chain 191786 chr6 171115067 + 111826715 111829059 L1P2 5180 - 2823 5178 19887 344 0 1 173 1 0 348 4 3 9 1 0 39 1 0 28 2 0 511 0 4 99 0 15 74 4 5 189 1 0 166 4 25 7 21 0 68 3 2 53 2 1 33 16 15 143 chain 3026 chr6 171115067 + 111908158 111908200 MIRb 242 - 46 88 224444 4 1 0 5 0 1 32 chain 83865 chr6 171115067 + 111928889 111929877 LTR13 1007 + 8 1007 41962 211 0 1 84 1 0 125 3 12 23 0 2 495 0 2 8 2 0 36 chain 24679 chr6 171115067 + 111932572 111932927 THE1B 368 - 0 368 106557 37 27 25 4 0 1 133 1 0 104 5 20 44 chain 216820 chr6 171115067 + 111956090 111958545 L1PA5 6144 - 12 2463 18066 862 14 9 1544 0 1 35 chain 86334 chr6 171115067 + 111958546 111959505 L1PA5 6144 + 2724 3682 41030 452 1 0 506 chain 4180 chr6 171115067 + 111967369 111967418 MLT1A0 366 + 301 349 204830 37 1 0 11 chain 3722 chr6 171115067 + 112091390 112091485 MER33 330 + 105 213 211610 16 2 14 16 21 24 18 2 0 20 chain 126982 chr6 171115067 + 112107265 112108712 L1PA5 6144 - 1 1444 28819 452 1 7 43 11 0 895 0 1 45 chain 135871 chr6 171115067 + 112142311 112143829 L1PA5 6144 + 4607 6130 26866 687 0 5 831 chain 44241 chr6 171115067 + 112156594 112157108 LTR10D 510 - 0 510 63895 433 5 1 76 chain 27044 chr6 171115067 + 112203867 112204156 AluY 311 + 21 311 96135 111 0 1 178 chain 556210 chr6 171115067 + 112224202 112230223 L1PA2 6032 - 3 6029 699 849 0 4 1056 0 1 2800 0 1 1007 1 0 308 chain 98777 chr6 171115067 + 112237810 112239049 HERVL-int 5654 - 0 1245 37082 134 1 0 155 1 0 26 1 0 58 8 11 234 3 0 134 0 1 44 10 19 75 1 0 354 chain 527742 chr6 171115067 + 112250242 112256621 L1PA7 6471 - 34 6471 4425 275 10 9 240 0 1 104 0 3 178 0 6 518 0 7 5 6 0 111 0 1 345 1 0 320 0 5 53 0 1 666 0 1 40 0 4 47 1 0 435 1 0 36 0 15 370 0 2 284 0 2 589 0 3 5 15 22 30 1 0 815 12 14 311 0 2 103 16 25 30 6 7 168 4 1 228 chain 6457 chr6 171115067 + 112268419 112268628 L1MB3 1562 + 1373 1552 181578 28 63 32 6 0 1 24 1 0 11 31 33 15 1 0 29 chain 28944 chr6 171115067 + 112283658 112283960 AluYa5 310 - 8 310 89249 302 chain 25119 chr6 171115067 + 112322807 112323147 THE1B 368 + 0 353 104178 44 0 15 114 1 0 128 14 13 39 chain 3123 chr6 171115067 + 112345864 112345979 L2a 937 + 653 763 222497 5 1 0 27 63 59 19 chain 112493 chr6 171115067 + 112368273 112369573 SVA_D 2077 + 0 2077 33541 11 5 7 29 6 0 563 5 45 33 0 40 58 0 40 24 0 661 566 chain 81276 chr6 171115067 + 112372681 112373648 L1P2 5180 - 2951 3898 43052 80 22 0 29 1 3 835 chain 18531 chr6 171115067 + 112373648 112373864 L1PA5 6144 + 5929 6144 131424 102 1 0 113 chain 26372 chr6 171115067 + 112404523 112404819 AluYf4 310 - 12 309 98527 49 0 1 247 chain 81750 chr6 171115067 + 112426781 112427739 L1PA4 6152 + 5175 6137 42871 128 1 5 313 8 0 487 0 8 21 chain 12185 chr6 171115067 + 112499647 112499906 L1PB1 5432 - 8 246 151474 4 1 0 16 1 0 13 1 0 21 7 6 18 2 0 14 8 5 22 18 9 16 1 0 43 19 17 34 chain 4150 chr6 171115067 + 112517687 112517737 U6 107 - 46 96 205237 50 chain 71512 chr6 171115067 + 112521441 112522242 L1PA7 6471 + 5667 6466 47691 792 2 0 7 chain 31214 chr6 171115067 + 112624600 112625030 MER57A1 433 + 0 433 82136 245 0 1 30 0 1 10 1 0 13 28 30 103 chain 11463 chr6 171115067 + 112625783 112625980 L1PA17 2846 - 154 340 154459 43 1 0 17 1 0 32 11 8 56 2 1 14 6 1 14 chain 5465 chr6 171115067 + 112632189 112632470 MER58D 378 - 8 339 190365 16 29 25 24 35 34 38 114 169 25 chain 7357 chr6 171115067 + 112638818 112638919 MER57D 437 + 338 437 175047 5 2 0 94 chain 70597 chr6 171115067 + 112649756 112650836 MER11B 1079 - 0 1079 48114 10 0 1 18 1 0 170 1 2 77 10 12 11 18 20 14 10 0 26 1 0 89 49 48 4 0 1 34 1 0 4 1 2 100 10 9 67 3 6 149 1 4 201 chain 82879 chr6 171115067 + 112706495 112707517 L1PA10 4194 + 3094 4116 42385 240 5 6 742 1 0 34 chain 22164 chr6 171115067 + 112729978 112730273 AluSc8 310 + 10 296 119527 112 3 7 159 13 0 8 chain 8955 chr6 171115067 + 112742116 112742292 L1M1 2793 - 1455 1621 165851 16 0 1 26 37 30 17 4 1 67 1 0 8 chain 486987 chr6 171115067 + 112742303 112748752 L1PA7 6471 + 3 6458 7485 213 0 3 5 0 12 175 0 1 208 0 3 14 1 2 281 1 2 162 0 16 415 0 1 72 0 1 170 1 0 592 6 8 160 0 2 370 5 8 201 0 4 470 0 5 209 3 6 729 0 4 197 0 1 4 1 0 49 0 3 173 0 1 241 0 28 41 0 1 27 0 1 31 0 1 5 3 2 181 393 303 402 0 1 238 chain 35039 chr6 171115067 + 112747719 112748112 LTR10C 591 + 0 393 76136 393 chain 25507 chr6 171115067 + 112750162 112750722 L1M1 2793 - 1613 2132 102190 116 0 1 60 1 0 15 12 16 64 26 23 46 13 10 26 60 38 20 60 43 41 chain 10537 chr6 171115067 + 112785860 112785995 MSTA 426 + 271 426 158107 25 1 21 109 chain 93775 chr6 171115067 + 112788440 112789474 L1PA3long 6157 - 0 1033 38416 773 1 0 260 chain 6713 chr6 171115067 + 112789488 112789571 LTR23 429 - 192 275 179588 83 chain 62104 chr6 171115067 + 112829534 112830202 SVA_F 1814 - 0 667 51850 12 1 0 282 0 2 331 1 0 10 1 0 30 chain 137523 chr6 171115067 + 112848864 112850417 SVA_D 2077 - 0 2077 26557 621 1 2 30 0 303 67 1 138 269 0 80 545 0 3 19 chain 5991 chr6 171115067 + 112853499 112855188 L1PA3long 6157 - 0 1690 11448 156 0 1 1533 chain 127570 chr6 171115067 + 112855445 112856842 L1PA3long 6157 - 1949 3346 28677 1397 chain 518213 chr6 171115067 + 112862154 112869342 L1PA7 6471 + 0 6470 5355 236 51 2 167 32 0 238 1 0 201 0 1 260 1 5 16 17 0 327 2 0 31 4 0 160 10 11 764 5 8 93 0 2 13 9 3 94 0 2 734 0 1 149 6 5 481 7 6 662 0 4 101 0 3 173 1 2 65 326 0 582 9 15 7 0 4 177 314 0 185 0 3 477 chain 159874 chr6 171115067 + 112871818 112873715 L1PA6 6164 - 2 1910 23358 839 0 8 7 9 12 1042 chain 108474 chr6 171115067 + 112873715 112874981 L1PA6 6164 + 2974 4242 34571 224 0 1 28 0 1 1014 chain 260390 chr6 171115067 + 112905198 112909019 L1PB2 3958 - 120 3920 15679 63 1 0 22 3 1 67 5 4 70 0 1 5 2 1 25 0 1 31 0 2 94 7 4 8 2 0 65 5 0 9 7 6 37 19 17 345 0 40 132 5 7 65 1 0 53 0 18 11 45 0 107 7 10 33 1 0 144 1 2 19 0 1 52 0 21 119 0 2 361 4 1 32 3 0 94 4 0 46 1 0 327 1 0 13 3 0 9 1 2 20 0 4 19 1 7 7 2 0 70 2 1 76 18 16 71 4 0 24 16 16 48 6 0 6 11 17 224 6 10 317 10 0 56 2 0 3 1 0 45 20 10 32 2 0 32 9 4 19 6 1 18 14 10 18 chain 6008 chr6 171115067 + 112923686 112923796 L1MA3 4352 + 1020 1128 185162 41 21 20 29 1 0 18 chain 10671 chr6 171115067 + 112931749 112931877 THE1A 353 + 225 353 157524 128 chain 13600 chr6 171115067 + 112950084 112953918 L1PA3long 6157 - 1690 5538 11448 520 0 1 736 0 1 504 0 5 185 0 2 965 0 5 924 chain 134698 chr6 171115067 + 112953918 112955433 L1PA3long 6157 + 4634 6157 27041 1108 0 4 77 0 1 182 1 4 147 chain 3306 chr6 171115067 + 112989292 112989681 MER52C 1267 + 891 973 218859 28 316 22 17 13 0 15 chain 24936 chr6 171115067 + 112992526 112992817 AluSp 311 - 9 300 105132 291 chain 185535 chr6 171115067 + 112996376 112998630 L1PA6 6164 + 3892 6162 20460 673 0 1 77 1 0 174 0 2 108 1 0 152 4 11 225 5 1 270 0 12 564 chain 107152 chr6 171115067 + 113009715 113011156 LTR12C 1709 - 0 1709 34931 84 5 4 153 5 8 84 0 2 146 0 4 86 1 10 10 3 1 7 1 0 96 0 278 267 4 5 83 0 43 42 11 7 8 0 4 53 68 0 224 chain 565636 chr6 171115067 + 113024947 113030980 L1HS 6032 + 0 6031 181 2950 0 5 1061 8 0 1679 0 1 335 chain 21655 chr6 171115067 + 113032442 113032702 AluSp 311 + 11 286 121555 105 1 16 154 chain 35664 chr6 171115067 + 113039943 113040444 MER1A 529 - 13 529 75317 44 30 28 6 0 2 395 12 27 14 chain 5456 chr6 171115067 + 113059746 113059811 MSTB 430 + 8 73 190455 65 chain 91434 chr6 171115067 + 113097042 113098253 L1PA8 5853 + 4231 5852 39152 350 16 1 245 0 1 182 2 0 56 0 1 143 1 429 40 1 0 8 15 14 19 0 1 19 2 1 19 1 0 92 chain 556904 chr6 171115067 + 113134223 113140249 L1PA2 6032 + 0 6028 617 715 0 1 2182 0 1 3129 chain 28508 chr6 171115067 + 113164715 113165269 L1PA11 4918 - 289 809 91157 18 137 107 16 1 0 16 2 0 78 7 6 52 6 5 26 1 2 194 chain 44085 chr6 171115067 + 113190193 113190797 L1PA2 6032 + 2052 2658 64115 145 0 2 58 6 5 242 0 1 153 chain 261751 chr6 171115067 + 113190798 113194155 L1PA2 6032 + 2663 6026 15603 379 10 10 31 1 0 285 8 11 442 12 6 134 1 0 4 0 1 113 0 2 304 5 4 114 8 6 380 1 8 204 1 0 4 0 1 70 0 4 846 chain 62547 chr6 171115067 + 113194163 113194964 L1PA8 5853 + 5053 5849 51656 41 1 0 425 0 3 42 1 0 44 2 0 70 2 1 21 2 1 39 2 1 22 1 0 86 chain 23457 chr6 171115067 + 113207014 113207301 L1PA6 6164 + 5875 6162 113335 287 chain 24874 chr6 171115067 + 113208928 113209227 AluSg7 307 - 8 307 105494 299 chain 9939 chr6 171115067 + 113209227 113209400 MSTB 430 - 237 404 160880 25 29 21 24 0 1 8 3 4 84 chain 4699 chr6 171115067 + 113221858 113221909 L1MA9 1812 - 945 996 198543 51 chain 103296 chr6 171115067 + 113229885 113231060 L1PA5 6144 + 4967 6144 35924 326 1 5 558 1 0 138 4 3 147 chain 550792 chr6 171115067 + 113235567 113241520 L1PA2 6032 - 0 5954 1344 1070 0 1 4883 chain 85360 chr6 171115067 + 113276487 113277466 L1PA5 6144 + 5175 6144 41394 208 1 0 508 1 0 245 8 0 8 chain 195790 chr6 171115067 + 113279441 113281827 L1PA7 6471 + 4018 6438 19517 756 0 3 86 4 22 100 5 6 60 0 1 232 0 1 117 0 2 220 6 5 69 0 2 192 0 2 209 1 7 63 10 9 256 chain 21535 chr6 171115067 + 113293228 113293586 L1PA15 4387 + 3656 4006 122024 26 9 0 18 5 7 106 21 23 54 2 0 16 2 0 6 1 3 18 1 0 73 chain 20573 chr6 171115067 + 113298031 113298347 THE1B 368 + 14 368 125387 30 0 15 109 1 0 5 2 1 23 2 0 64 0 19 19 23 31 38 chain 9585 chr6 171115067 + 113323026 113323267 MER33 330 + 27 266 162667 33 99 98 96 2 1 11 chain 24290 chr6 171115067 + 113326816 113327110 AluY 311 + 5 301 108704 11 0 1 115 0 1 168 chain 18982 chr6 171115067 + 113335279 113335536 AluY 311 + 49 290 130151 84 23 7 150 chain 156681 chr6 171115067 + 113347693 113349846 L1PBa1 4058 - 1120 3495 23771 418 0 1 52 9 4 312 0 204 285 1 0 7 1 2 523 46 47 104 0 3 7 8 5 85 16 29 106 0 10 7 13 3 42 6 7 44 24 31 37 chain 74332 chr6 171115067 + 113349846 113351525 L1PB1 5432 + 4313 5417 46345 67 2 0 73 0 2 94 1 0 68 5 6 75 10 9 193 1 3 200 547 0 11 1 0 19 1 0 14 16 11 9 2 0 53 2 1 16 2 1 43 1 0 15 3 0 7 14 5 19 10 7 12 2 0 24 1 0 22 0 3 9 1 0 9 1 0 4 chain 63476 chr6 171115067 + 113362684 113363457 L1PA8 5853 - 1115 1899 51253 7 0 15 33 1 0 65 10 4 342 0 2 59 0 1 256 chain 90242 chr6 171115067 + 113363457 113364582 L1PA8 5853 + 4723 5853 39562 89 0 1 168 3 4 21 0 9 41 0 1 505 1 0 46 2 0 71 10 9 4 1 0 48 2 1 19 1 0 93 chain 22379 chr6 171115067 + 113390789 113391136 THE1C 375 - 25 375 118589 142 32 36 29 0 2 18 3 0 32 17 15 6 0 2 68 chain 63402 chr6 171115067 + 113407289 113408057 L1PA7 6471 + 5682 6463 51279 94 0 4 517 1 2 17 1 0 98 4 13 36 chain 15691 chr6 171115067 + 113428003 113428198 L1PA6 6164 + 5935 6130 139299 195 chain 15220 chr6 171115067 + 113434754 113434946 AluY 311 + 48 235 140715 85 11 6 96 chain 18926 chr6 171115067 + 113464722 113464959 AluSp 311 + 73 305 130303 47 5 0 185 chain 7245 chr6 171115067 + 113483952 113484060 L1MA4 2864 + 2566 2675 175796 62 9 10 37 chain 4719 chr6 171115067 + 113491096 113491266 Charlie1a 1436 - 119 308 198298 7 2 0 28 94 115 39 chain 28622 chr6 171115067 + 113498727 113499327 L1PB3 3668 - 54 606 90640 15 41 33 37 3 1 21 10 7 15 74 38 52 7 6 98 1 0 90 9 12 27 7 4 19 5 8 69 chain 4236 chr6 171115067 + 113514856 113514908 MER31B 477 - 414 470 204094 13 0 4 39 chain 281657 chr6 171115067 + 113533595 113536813 L1PA5 6144 - 16 3251 14556 36 0 4 941 0 5 1307 0 6 203 0 1 636 0 1 95 chain 551247 chr6 171115067 + 113547689 113553716 L1PA2 6032 + 1 6032 1284 67 4 5 183 1 0 2882 0 1 2875 1 4 14 chain 41437 chr6 171115067 + 113584610 113585109 MER9a3 513 - 0 499 67366 79 0 1 175 1 0 244 chain 258288 chr6 171115067 + 113585122 113588599 HERVK9-int 4720 - 0 4575 15792 273 0 66 208 0 2 700 1 419 20 4 0 7 3 7 322 311 0 276 0 924 624 0 1 5 1 0 81 10 0 7 0 10 535 1 0 5 7 8 46 17 16 13 chain 39953 chr6 171115067 + 113589207 113589682 MER9a3 513 - 22 498 69392 57 0 1 175 1 0 238 0 1 4 chain 58207 chr6 171115067 + 113604505 113605242 L1PA8A 6298 + 5545 6291 53860 35 0 1 83 23 25 266 0 6 330 chain 18722 chr6 171115067 + 113608138 113608531 MSTA 426 - 0 426 130900 110 0 20 40 36 41 8 7 0 56 31 55 23 38 29 44 chain 8280 chr6 171115067 + 113628931 113629021 L1PA4 6152 - 9 99 169511 90 chain 4928 chr6 171115067 + 113645009 113645070 MER5A 189 + 91 153 195957 57 0 1 4 chain 25321 chr6 171115067 + 113646004 113646434 L1PA14 3548 + 3075 3475 103116 35 7 4 17 2 0 6 1 0 84 1 0 110 1 0 12 5 1 34 4 2 13 2 1 4 1 0 17 14 7 33 6 0 10 1 0 10 chain 56492 chr6 171115067 + 113656478 113657237 L1PA8 5853 - 0 766 54855 55 15 0 38 1 0 19 2 1 43 4 0 6 1 4 8 2 1 70 2 0 46 11 10 288 0 25 77 6 10 65 chain 13001 chr6 171115067 + 113658347 113658541 MER30 238 - 5 201 148248 40 14 11 69 3 0 8 0 5 7 0 3 53 chain 11358 chr6 171115067 + 113705427 113705549 L1PA4 6152 - 0 122 154867 122 chain 60366 chr6 171115067 + 113721776 113722466 L1PA4 6152 + 5434 6145 52648 25 1 20 41 0 1 214 0 1 409 chain 41133 chr6 171115067 + 113746268 113746817 L1PA8 5853 + 5308 5853 67737 42 0 1 16 0 3 194 1 0 44 2 0 70 23 21 45 1 0 16 2 1 8 1 0 84 chain 3047 chr6 171115067 + 113750029 113750061 U2 167 + 0 32 224047 32 chain 4559 chr6 171115067 + 113772200 113772267 MER96B 391 + 106 174 200119 29 2 3 36 chain 72689 chr6 171115067 + 113790013 113790842 L1PA5 6144 + 5301 6132 47175 736 0 2 93 chain 55554 chr6 171115067 + 113792878 113793511 L1PA6 6164 - 12 646 55384 66 0 1 567 chain 12766 chr6 171115067 + 113812989 113813149 MER47A 366 - 101 265 149189 114 0 4 46 chain 5176 chr6 171115067 + 113836208 113836274 MADE1 96 - 4 87 193278 31 0 17 35 chain 6188 chr6 171115067 + 113837694 113837802 MER5A1 166 + 0 107 183676 19 21 20 68 chain 556546 chr6 171115067 + 113852324 113858349 L1PA2 6032 + 6 6030 668 246 5 4 5774 chain 116455 chr6 171115067 + 113870896 113872190 L1PA3long 6157 + 4848 6157 32293 599 6 9 564 0 12 125 chain 33045 chr6 171115067 + 113915216 113915999 MLT2A1 477 - 0 477 79147 53 37 39 171 308 0 8 0 1 25 0 1 9 4 1 22 0 1 146 chain 79534 chr6 171115067 + 113926965 113927813 L1HS 6032 - 0 848 43811 848 chain 86663 chr6 171115067 + 113927813 113928741 L1HS 6032 + 4258 5186 40900 928 chain 27743 chr6 171115067 + 113931291 113931649 THE1C 375 + 0 356 93891 182 2 1 166 1 0 7 chain 10319 chr6 171115067 + 113974458 113974605 THE1D 372 - 0 148 159040 56 16 17 75 chain 8449 chr6 171115067 + 114019694 114019788 L1PA4 6152 + 6058 6152 168569 94 chain 24658 chr6 171115067 + 114024824 114025103 AluSp 311 - 23 302 106680 279 chain 12005 chr6 171115067 + 114043089 114043618 Tigger4b 360 - 13 209 152180 27 20 19 61 332 1 74 1 0 14 chain 7709 chr6 171115067 + 114049802 114049900 MER33 330 + 146 244 172874 98 chain 10282 chr6 171115067 + 114058858 114059056 MLT1A0 366 + 113 320 159227 43 16 15 43 35 45 61 chain 30467 chr6 171115067 + 114064435 114064752 AluYb8 318 + 0 317 83495 317 chain 22700 chr6 171115067 + 114116560 114116939 THE1D 372 - 0 372 117076 135 1 0 12 1 0 25 32 34 102 24 15 25 7 9 15 chain 5172 chr6 171115067 + 114125601 114125662 MER41A 554 - 88 149 193335 61 chain 28340 chr6 171115067 + 114136630 114136927 AluYa5 310 + 1 298 91792 297 chain 16611 chr6 171115067 + 114143200 114143413 MER30 238 - 0 214 136635 126 3 4 84 chain 4011 chr6 171115067 + 114162001 114162053 U13 108 + 2 53 207216 20 1 0 31 chain 16051 chr6 171115067 + 114190518 114190854 THE1B 368 + 0 368 138213 44 22 38 44 18 26 44 36 46 34 3 1 17 1 0 6 1 3 59 1 0 6 chain 27865 chr6 171115067 + 114218117 114218443 LTR17 781 - 455 781 93475 326 chain 46363 chr6 171115067 + 114231381 114231977 THE1A-int 1579 - 990 1579 61718 24 25 20 195 6 4 346 chain 12097 chr6 171115067 + 114233130 114233301 MSTA 426 + 249 426 151803 51 13 18 49 0 1 58 chain 20833 chr6 171115067 + 114234857 114235219 THE1D 372 - 0 367 124503 65 27 33 49 61 60 160 chain 11856 chr6 171115067 + 114250600 114250760 MLT2A1 477 + 208 368 152809 53 6 7 56 1 0 44 chain 96035 chr6 171115067 + 114252773 114253966 SVA_B 1603 + 44 1597 37809 468 46 162 67 5 45 43 10 174 23 1 38 35 0 1 94 0 2 401 chain 7262 chr6 171115067 + 114260480 114260600 L1PB1 5432 + 5308 5420 175702 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3144 chr6 171115067 + 114298415 114298453 MLT2D 439 + 401 439 222080 38 chain 19029 chr6 171115067 + 114329557 114329860 MER51B 395 - 0 323 130036 77 11 23 27 0 2 9 6 7 5 1 0 128 11 17 28 chain 16065 chr6 171115067 + 114332333 114332600 MER51B 395 - 1 291 138165 52 7 11 20 0 12 54 1 0 4 4 13 11 2 3 5 1 0 37 6 5 63 chain 1466 chr6 171115067 + 114332600 114332917 LTR14 556 + 0 318 80808 231 7 8 79 chain 30316 chr6 171115067 + 114332938 114333449 LTR7B 505 - 0 505 83869 48 17 16 35 0 2 42 1 0 82 29 0 28 15 77 58 1 11 62 54 5 39 chain 235304 chr6 171115067 + 114334973 114338801 HERVH-int 3825 - 0 3747 17011 530 3 4 16 33 32 223 5 4 214 11 0 226 0 25 448 6 11 485 1 0 4 0 1 131 427 78 146 41 11 29 0 1 122 30 31 212 1 4 42 114 349 30 21 20 16 16 16 20 12 11 61 51 91 25 0 2 76 chain 31421 chr6 171115067 + 114338886 114339309 LTR7B 505 - 10 505 81780 38 17 16 76 1 0 83 0 2 28 1 0 4 1 0 6 3 67 60 0 10 105 chain 1003 chr6 171115067 + 114339312 114339529 LTR14 556 + 337 556 80808 90 0 1 16 1 2 110 chain 5092 chr6 171115067 + 114339533 114339615 MER51B 395 - 295 395 194160 34 7 26 12 1 0 28 chain 4118 chr6 171115067 + 114345373 114345435 L1MA10 1535 - 324 385 205674 42 2 1 18 chain 28846 chr6 171115067 + 114356431 114356785 L1PA6 6164 + 5810 6162 89682 205 0 1 140 3 0 6 chain 134225 chr6 171115067 + 114393841 114395467 L1PA6 6164 + 4538 6162 27164 111 1 0 363 0 2 9 5 6 288 0 3 246 8 1 264 0 1 82 0 1 87 12 12 142 2 0 6 chain 27057 chr6 171115067 + 114401559 114401947 L1PA16 3655 + 3201 3589 96087 76 15 14 125 6 9 85 0 1 67 3 0 11 chain 37700 chr6 171115067 + 114403813 114404262 LTR10F 562 + 0 562 72552 120 0 115 54 2 0 273 chain 23998 chr6 171115067 + 114457327 114457690 THE1B 368 + 0 368 110342 89 0 1 79 1 0 21 49 54 124 chain 103718 chr6 171115067 + 114469255 114470879 L1PA8 5853 + 4503 5832 35795 212 0 1 23 313 0 40 6 10 163 4 6 29 0 1 16 1 5 75 0 2 478 1 0 46 2 0 68 2 1 8 5 4 10 0 1 38 2 1 18 2 1 37 0 10 25 chain 16075 chr6 171115067 + 114504313 114504676 THE1B 368 + 0 368 138134 60 74 75 24 60 55 17 0 9 128 chain 24583 chr6 171115067 + 114522817 114523226 THE1C 375 - 0 367 107072 25 1 0 22 34 0 22 15 6 48 0 1 43 6 9 9 1 0 6 1 2 29 1 2 26 3 0 117 chain 25061 chr6 171115067 + 114563778 114564040 AluYb8 318 + 43 305 104504 262 chain 115423 chr6 171115067 + 114576083 114578002 THE1B-int 1605 - 0 1605 32637 20 1 0 197 3 4 230 25 8 31 1 3 95 23 26 29 0 2 7 5 0 241 0 22 22 0 1 49 1 2 159 0 25 7 348 0 20 7 0 116 0 1 147 0 6 135 chain 6420 chr6 171115067 + 114598552 114598632 MADE1 96 + 0 96 181858 32 1 17 47 chain 85936 chr6 171115067 + 114619789 114620819 MER11C 1089 + 0 1063 41179 221 0 15 14 3 4 63 0 4 369 0 4 43 0 1 36 0 8 281 chain 6819 chr6 171115067 + 114669367 114669858 MER2 342 - 6 204 178799 36 7 8 12 366 65 56 0 4 6 0 3 8 chain 10194 chr6 171115067 + 114719932 114720045 L1PA4 6152 + 6028 6141 159655 113 chain 16077 chr6 171115067 + 114727801 114728172 L1PB1 5432 - 5 365 138125 5 2 0 16 0 7 8 1 0 21 1 0 13 15 13 13 2 0 6 1 0 17 16 6 6 3 0 15 1 0 41 9 8 11 2 1 8 0 1 44 2 0 8 5 1 11 1 0 13 2 1 19 1 15 32 chain 5066 chr6 171115067 + 114743464 114743517 LTR7Y 441 - 0 53 194465 53 chain 5066 chr6 171115067 + 114743532 114743585 LTR7Y 441 - 0 53 194464 53 chain 40902 chr6 171115067 + 114743602 114744053 LTR7 482 - 0 482 68028 185 0 31 266 chain 269027 chr6 171115067 + 114745332 114749008 HERVH-int 3825 - 0 3825 15230 258 0 1 4 1 0 178 54 264 39 9 11 551 0 139 376 5 20 268 9 35 239 0 1 218 15 0 444 1 0 49 2 1 11 66 1 18 44 1 42 1 0 25 3 0 14 127 0 13 70 0 24 1 0 10 1 0 38 5 0 56 3 81 172 0 11 212 chain 40003 chr6 171115067 + 114749010 114749461 LTR7 482 - 0 482 69314 187 1 32 263 chain 199533 chr6 171115067 + 114754323 114756856 L1PA4 6152 - 1 2235 19241 675 0 2 102 2 0 25 0 19 20 0 4 348 322 0 1039 chain 18604 chr6 171115067 + 114768815 114769180 THE1D 372 - 0 372 131211 8 0 1 176 124 130 57 chain 7202 chr6 171115067 + 114797245 114797327 L1PA8 5853 + 5771 5853 176055 82 chain 110726 chr6 171115067 + 114803254 114804982 L1PREC2 3366 + 1376 3051 34020 218 1 0 100 14 18 469 25 26 41 0 7 172 17 0 121 2 1 48 6 0 155 2 0 54 2 1 20 72 61 16 29 22 25 37 20 31 10 8 41 chain 8042 chr6 171115067 + 114819988 114820080 L1PA5 6144 - 16 108 170799 92 chain 8670 chr6 171115067 + 114822666 114823149 L1PA5 6144 - 2 485 57356 483 chain 76592 chr6 171115067 + 114823257 114824132 L1PA5 6144 + 4670 5548 45166 624 5 8 246 chain 14473 chr6 171115067 + 114825265 114825435 L1PA5 6144 - 2 168 142973 7 4 0 159 chain 2657 chr6 171115067 + 114825437 114825585 L1PA5 6144 - 485 634 57356 140 0 1 8 chain 103566 chr6 171115067 + 114831313 114832797 L1PB 1623 + 117 1576 35842 52 19 22 78 1 0 15 7 16 98 2 1 69 0 3 13 1 0 105 1 0 4 1 3 682 0 1 32 5 0 139 6 4 30 1 0 5 4 1 11 5 1 14 1 0 8 56 33 19 chain 29275 chr6 171115067 + 114836032 114836343 AluYb8 318 - 7 318 87669 311 chain 375917 chr6 171115067 + 114850065 114855489 L1PB1 5432 - 19 5352 10886 9 1 0 13 1 0 21 1 0 24 2 0 14 55 40 10 5 4 28 0 1 12 16 17 53 2 0 9 16 11 9 1 0 24 3 0 9 154 9 43 16 16 189 47 46 4 0 1 167 9 8 74 0 2 99 0 1 642 4 6 71 2 0 5 8 9 165 1 2 42 0 54 175 0 1 95 0 2 223 1 2 117 0 1 42 0 11 257 0 1 30 5 6 185 0 1 231 3 4 133 0 4 292 17 18 199 26 11 14 1 0 160 21 29 254 0 1 93 7 0 7 0 9 28 11 10 403 15 16 222 10 16 67 chain 24971 chr6 171115067 + 114861981 114862835 LTR12C 1709 - 253 1008 104952 16 0 1 39 373 314 13 0 1 8 0 82 21 82 0 124 42 0 136 chain 1438 chr6 171115067 + 114862492 114862523 LTR12C 1709 - 785 816 181320 31 chain 3560 chr6 171115067 + 114862657 114862698 LTR12C 1709 - 831 872 194774 41 chain 3198 chr6 171115067 + 114862835 114862923 LTR12C 1709 - 689 777 133715 88 chain 160332 chr6 171115067 + 114875667 114877575 L1PA7 6471 + 4539 6453 23294 86 1 4 813 0 1 180 1 0 75 0 2 184 0 1 568 chain 28382 chr6 171115067 + 114904183 114904606 MLT2A1 477 - 0 477 91657 50 6 0 8 0 36 71 23 22 18 10 30 63 6 10 26 0 1 142 chain 146858 chr6 171115067 + 114904606 114906585 L1PBa 3878 + 1729 3748 25038 75 0 1 45 0 11 248 13 15 84 0 11 134 8 9 102 3 4 199 6 11 34 0 4 276 0 2 54 0 2 57 1 0 115 4 1 258 1 2 38 0 5 51 1 2 136 2 1 19 3 1 12 chain 12777 chr6 171115067 + 114906779 114907028 L1PB1 5432 + 5196 5422 149149 24 2 1 15 1 0 45 1 0 15 28 17 11 2 0 8 1 0 14 3 1 23 1 0 21 2 0 13 1 0 18 chain 22928 chr6 171115067 + 114912934 114913213 AluY 311 + 10 294 115970 38 5 9 69 0 1 167 chain 27677 chr6 171115067 + 114931758 114932116 THE1C 375 + 8 373 94123 178 0 1 144 11 17 25 chain 34110 chr6 171115067 + 114934422 114934792 L1PA3long 6157 + 5777 6147 77469 370 chain 502914 chr6 171115067 + 114949185 114955279 L1PA6 6164 - 2 6164 6674 10 0 4 176 4 6 46 11 13 80 0 1 71 0 1 445 1 2 28 0 1 375 0 2 121 1 0 416 1 5 40 1 0 4 0 1 618 1 0 395 0 1 4 0 2 104 0 1 412 2 1 233 0 3 212 1 2 202 1 0 897 13 32 371 0 17 240 1 0 104 1 12 100 19 20 80 2 1 250 chain 63002 chr6 171115067 + 114979532 114980427 L1PA8 5853 + 4916 5836 51445 93 2 0 73 1 3 170 3 43 106 0 1 89 11 0 70 2 1 45 2 0 126 7 6 18 2 1 75 chain 27766 chr6 171115067 + 114980487 114980841 THE1A 353 + 0 353 93815 105 6 5 243 chain 117720 chr6 171115067 + 114980842 114982443 THE1A-int 1579 + 1 1579 31885 14 0 2 80 1 2 142 7 10 17 33 1 233 2 1 86 1 2 128 49 16 9 0 33 487 0 1 19 0 1 284 0 1 9 chain 6424 chr6 171115067 + 114982443 114982547 THE1A 353 + 0 107 181830 60 11 14 33 chain 18282 chr6 171115067 + 114982551 114982771 THE1A 353 + 110 330 132122 220 chain 8825 chr6 171115067 + 114984773 114984869 L1PA16 3655 + 3317 3413 166525 96 chain 93293 chr6 171115067 + 115009482 115010554 MER11C 1089 - 16 1089 38564 144 8 9 920 chain 536580 chr6 171115067 + 115041886 115047916 L1PA2 6032 - 0 6031 3366 1006 1 0 178 1 0 305 1 2 26 1 2 679 0 2 271 2 1 120 0 1 3183 5 4 251 chain 25104 chr6 171115067 + 115057119 115057419 AluSp 311 - 11 311 104265 300 chain 51610 chr6 171115067 + 115064182 115064779 L1PA5 6144 - 1 599 57886 153 8 9 436 chain 10873 chr6 171115067 + 115064779 115064906 L1P1 4361 + 4202 4328 156683 103 1 0 23 chain 5801 chr6 171115067 + 115068885 115068955 MER41A 554 + 399 469 187141 70 chain 19051 chr6 171115067 + 115075919 115076297 THE1C 375 - 0 375 129968 25 1 0 26 4 0 30 6 7 41 62 61 4 0 1 89 13 0 6 7 21 64 chain 4336 chr6 171115067 + 115099701 115099752 MADE1 96 + 45 96 202761 51 chain 537724 chr6 171115067 + 115121082 115127213 L1PA4 6152 - 11 6144 3198 993 1 0 179 1 0 310 0 1 29 1 0 673 0 2 272 2 1 119 0 1 1248 1 3 2302 chain 26137 chr6 171115067 + 115157710 115158011 L1PA6 6164 - 5 306 99452 301 chain 34729 chr6 171115067 + 115158011 115158397 L1PA6 6164 + 5422 5808 76575 386 chain 99296 chr6 171115067 + 115166711 115167800 L1PA2 6032 - 0 1090 36951 261 0 1 828 chain 34942 chr6 171115067 + 115186067 115186461 L1PA4 6152 - 18 413 76274 130 0 1 264 chain 45495 chr6 171115067 + 115186461 115186990 L1P1 4361 + 2 533 62501 28 0 2 501 chain 21901 chr6 171115067 + 115212982 115213231 L1PA3long 6157 - 0 256 120619 153 0 7 96 chain 7100 chr6 171115067 + 115213253 115213340 L1P1 4361 + 318 406 176750 83 0 1 4 chain 283207 chr6 171115067 + 115235799 115238963 L1PA4 6152 - 1 3165 14454 3164 chain 123029 chr6 171115067 + 115238964 115240330 L1PA4 6152 + 1622 2988 30035 1366 chain 513486 chr6 171115067 + 115244347 115250505 L1PA5 6144 - 0 6144 5836 185 1 0 409 14 0 3 1 0 914 0 1 956 0 1 165 1 2 1171 3 0 27 8 0 240 1 4 224 0 1 671 39 30 454 0 1 536 0 14 135 chain 20600 chr6 171115067 + 115265855 115266206 THE1B 368 - 0 368 125294 106 19 21 45 27 24 87 23 41 44 chain 46063 chr6 171115067 + 115273529 115274133 LTR19B 566 + 0 566 61985 94 0 5 77 0 2 28 45 0 360 chain 539597 chr6 171115067 + 115291550 115297565 L1PA2 6032 - 0 6029 2884 846 0 4 858 3 0 94 0 4 444 0 20 730 0 1 367 4 0 333 0 2 147 4 0 598 5 0 1328 9 8 245 chain 7871 chr6 171115067 + 115308881 115308969 THE1D-int 1627 - 0 88 171865 88 chain 40532 chr6 171115067 + 115308969 115309523 MLT2A2 560 + 0 560 68547 14 5 1 148 19 17 150 0 1 71 0 11 147 chain 491220 chr6 171115067 + 115330140 115335638 L1PA3long 6157 + 0 6157 7309 94 0 526 148 10 138 2791 0 2 1610 0 3 845 chain 62359 chr6 171115067 + 115338152 115338857 L1P1 4361 + 3625 4328 51735 525 1 0 155 1 0 23 chain 23105 chr6 171115067 + 115341255 115341633 THE1B 368 - 0 368 115116 62 1 0 63 50 42 29 1 0 108 9 0 8 0 9 47 chain 22649 chr6 171115067 + 115343208 115343566 THE1B 368 - 2 368 117328 56 6 0 7 0 4 47 41 51 35 1 0 51 0 1 114 chain 2485 chr6 171115067 + 115352782 115352952 L1PA7 6471 + 5017 5187 35199 170 chain 39745 chr6 171115067 + 115352956 115353398 LTR7 482 + 0 473 69693 264 0 31 178 chain 298870 chr6 171115067 + 115353409 115357073 HERVH-int 3825 + 0 3816 13485 181 0 2 29 0 11 309 70 0 38 1 0 10 1 0 24 28 0 15 1 0 12 3 0 26 0 20 40 22 1 11 2 1 49 1 0 874 0 4 24 8 35 251 0 1 1051 0 1 66 0 3 31 8 218 478 chain 40022 chr6 171115067 + 115358333 115358783 LTR7 482 + 0 482 69285 225 0 1 38 0 31 187 chain 18477 chr6 171115067 + 115358786 115360050 L1PA7 6471 + 5187 6469 35199 158 2 1 275 9 7 50 4 5 226 0 1 355 0 17 8 0 2 177 chain 47030 chr6 171115067 + 115375217 115375792 LTR22 571 - 0 571 61180 319 19 1 155 0 14 82 chain 9415 chr6 171115067 + 115402586 115402686 L1HS 6032 - 4825 4925 163482 100 chain 434415 chr6 171115067 + 115403073 115407885 L1PA3long 6157 + 1331 6147 9203 1378 0 5 3184 1 0 249 chain 22487 chr6 171115067 + 115413266 115413628 L1PA8 5853 + 5492 5853 118075 29 11 13 28 1 0 41 7 10 49 1 0 16 2 1 14 1 0 47 2 1 15 7 6 91 chain 53434 chr6 171115067 + 115414195 115414820 L1PA6 6164 - 8 633 56735 625 chain 24192 chr6 171115067 + 115423100 115423438 L1PA11 4918 - 4157 4496 109266 208 31 32 99 chain 27990 chr6 171115067 + 115423593 115424000 MLT2A1 477 - 81 477 93036 11 20 0 12 10 14 184 8 12 20 0 1 142 chain 18240 chr6 171115067 + 115434254 115434464 L1PA4 6152 + 5938 6151 132230 170 0 3 40 chain 73620 chr6 171115067 + 115434791 115435597 L1PA3long 6157 + 4725 5531 46721 806 chain 42831 chr6 171115067 + 115435597 115436068 L1PA3long 6157 + 5532 6003 65613 471 chain 13397 chr6 171115067 + 115436075 115436221 L1PA3long 6157 + 6011 6157 146736 146 chain 338723 chr6 171115067 + 115442420 115446379 L1P1 4361 + 1 3957 11932 336 6 7 230 1 0 128 12 5 471 0 3 775 4 5 1996 chain 22812 chr6 171115067 + 115467909 115468173 L1PA6 6164 - 656 919 116521 146 1 0 117 chain 54677 chr6 171115067 + 115468173 115468811 L1PA6 6164 + 5509 6154 55921 458 0 7 180 chain 381542 chr6 171115067 + 115471729 115477128 L1PB1 5432 - 19 5404 10714 9 1 0 13 1 0 21 1 0 24 2 0 14 14 11 9 9 0 12 2 0 4 1 0 16 1 0 43 1 0 16 2 1 52 2 0 10 18 13 11 1 0 5 28 26 472 0 2 249 2 0 590 7 17 33 5 3 8 0 8 9 3 2 79 0 4 215 0 3 10 9 10 47 0 1 91 8 9 365 1 12 100 6 5 129 8 12 30 3 5 83 1 0 5 3 0 115 0 4 37 0 1 50 0 1 42 1 0 4 0 1 10 2 3 129 10 10 60 18 12 51 0 5 106 3 0 5 0 3 99 0 1 138 1 7 24 4 6 151 49 25 231 18 5 131 12 16 36 1 0 213 0 1 4 0 2 67 0 1 86 2 1 55 13 12 133 1 0 92 1 0 55 0 1 5 1 0 192 9 10 18 chain 459531 chr6 171115067 + 115481839 115487544 L1PA7 6471 - 13 5742 8418 830 0 7 147 0 5 124 1 0 4 0 1 114 0 7 143 0 1 10 0 1 62 0 1 4 1 0 11 1 2 196 0 3 241 2 1 112 1 0 499 2 1 416 0 1 212 0 1 21 10 11 22 13 11 52 0 5 64 26 0 420 0 1 61 0 1 293 0 1 171 0 4 133 8 7 409 0 1 234 1 2 146 0 4 10 0 4 311 4 0 6 18 28 139 chain 58925 chr6 171115067 + 115490239 115490965 L1PA7 6471 - 7 743 53441 5 3 0 313 14 18 190 0 8 148 0 1 53 chain 323306 chr6 171115067 + 115496391 115500000 L1HS 6032 + 3 3633 12466 839 9 8 2366 0 22 395 chain 219006 chr6 171115067 + 115500000 115502392 L1PA2 6032 + 3633 6030 17945 1546 1 5 833 0 1 12 chain 522064 chr6 171115067 + 115543252 115549371 L1PA5 6144 + 0 6132 4950 800 0 6 145 1 2 9 0 1 70 1 0 421 0 1 128 0 1 227 0 1 1350 3 0 771 0 1 583 5 1 321 0 1 426 0 1 30 0 4 203 0 1 393 0 1 72 13 14 147 chain 53282 chr6 171115067 + 115552805 115553483 LTR12D 1347 - 12 942 56838 54 0 2 144 0 201 223 0 18 125 2 33 130 chain 454071 chr6 171115067 + 115556088 115561854 HERV9-int 5642 - 0 5642 8610 17 2 0 3 4 0 19 26 5 14 1 0 7 0 2 50 1 0 27 3 1 34 7 6 165 1 0 63 2 1 1045 0 1 197 0 6 30 0 1 580 0 1 470 0 2 565 0 2 6 0 1 931 11 7 11 69 69 157 0 9 30 4 0 27 80 0 93 0 85 40 84 0 71 8 7 501 2 1 265 26 0 17 chain 51673 chr6 171115067 + 115561882 115562563 LTR12D 1347 - 0 780 57847 184 4 12 54 0 97 291 22 16 126 chain 536422 chr6 171115067 + 115571236 115577402 L1PA4 6152 + 2 6152 3390 398 0 1 179 1 0 242 31 14 400 0 1 906 5 6 1015 3 1 1696 0 1 1290 chain 44940 chr6 171115067 + 115615653 115616189 L1PA5 6144 + 5604 6143 63128 383 8 11 145 chain 97865 chr6 171115067 + 115618745 115619966 L1PA7 6471 - 1700 2919 37310 39 0 1 55 0 2 86 1 2 98 0 1 474 11 12 105 7 0 186 2 1 157 chain 133957 chr6 171115067 + 115619966 115621989 L1PA7 6471 + 4783 6470 27220 201 0 1 53 6 18 334 0 2 220 21 0 151 10 12 32 337 1 131 0 1 102 0 2 318 0 1 107 chain 4687 chr6 171115067 + 115622912 115623018 L1MA6 2487 - 203 294 198664 5 0 2 44 34 17 23 chain 28767 chr6 171115067 + 115624551 115624856 AluYa5 310 + 0 304 90033 132 1 0 172 chain 13550 chr6 171115067 + 115627085 115627407 L1PB1 5432 - 18 329 146168 10 1 0 12 1 0 22 52 48 8 9 0 12 1 0 6 2 0 15 1 0 44 1 0 18 8 7 40 1 16 12 1 0 6 1 0 23 3 0 12 chain 36236 chr6 171115067 + 115629274 115629702 L1PA7 6471 - 417 856 74575 55 0 11 373 chain 2592 chr6 171115067 + 115629702 115629734 L1PA7 6471 + 6105 6137 231792 32 chain 27115 chr6 171115067 + 115629738 115630060 L1PA7 6471 + 6139 6461 95884 322 chain 28562 chr6 171115067 + 115654413 115654718 AluYa5 310 - 5 310 90911 305 chain 23290 chr6 171115067 + 115686769 115687080 THE1B 368 + 0 323 114257 44 6 21 107 1 0 19 2 0 132 chain 297067 chr6 171115067 + 115712426 115716219 L1P3 4156 - 355 4155 13583 56 0 1 216 0 1 637 0 4 38 18 30 182 26 4 173 0 1 1083 0 12 85 18 19 11 7 11 86 0 1 31 0 3 133 0 1 455 41 31 175 1 0 72 1 0 248 chain 73137 chr6 171115067 + 115723543 115724564 MER11A 1151 - 0 1151 46953 40 1 0 4 16 21 98 4 5 16 1 0 46 0 2 57 10 37 9 0 8 118 1 0 4 0 2 145 0 1 94 12 13 60 0 1 42 0 2 32 7 3 113 8 0 24 0 99 39 4 0 16 chain 11730 chr6 171115067 + 115736160 115736311 LTR5_Hs 974 - 702 852 153350 72 9 8 70 chain 15793 chr6 171115067 + 115736311 115736487 SVA_A 1864 + 1688 1862 138976 169 2 0 5 chain 42208 chr6 171115067 + 115737449 115738000 MER41A 554 + 0 554 66390 62 2 0 110 1 2 223 8 12 145 chain 81990 chr6 171115067 + 115761543 115762685 MER11C 1089 - 15 1089 42763 11 0 1 79 0 1 62 1 0 54 0 1 127 0 1 38 1 0 4 1 5 123 9 10 157 8 11 68 0 4 62 0 9 189 91 0 57 chain 20339 chr6 171115067 + 115768286 115768515 L1PA5 6144 + 5914 6143 126108 229 chain 22058 chr6 171115067 + 115784011 115784394 L1MA1 4479 - 289 650 119980 17 20 11 11 1 0 9 1 0 37 3 0 27 8 7 116 3 0 8 2 1 59 0 5 21 8 0 32 chain 509801 chr6 171115067 + 115796207 115802378 L1PA6 6164 - 6 6164 6186 139 5 4 183 0 2 81 0 7 426 0 4 12 0 4 582 24 1 64 1 0 71 1 9 56 2 1 470 0 1 338 2 0 506 0 1 205 0 2 403 3 1 196 0 1 54 5 0 208 1 2 324 4 0 166 9 0 311 1 0 549 0 1 22 0 2 60 4 5 564 0 1 119 chain 32339 chr6 171115067 + 115813859 115814272 THE1B-int 1605 - 19 428 80289 32 5 0 119 1 0 4 0 1 74 0 1 178 chain 452917 chr6 171115067 + 115837698 115843411 L1PA8 5853 + 114 5846 8658 188 9 13 87 1 12 219 0 3 736 5 7 512 0 1 120 8 6 67 10 11 558 0 1 215 0 1 6 1 0 5 1 0 31 1 0 483 4 0 194 2 3 278 1 2 231 0 3 8 0 2 878 0 1 10 1 3 85 0 1 453 15 14 49 2 0 71 1 0 7 1 0 51 2 1 19 1 0 86 chain 11556 chr6 171115067 + 115850928 115851277 L1PB1 5432 - 3 318 154079 4 1 0 7 2 0 9 21 19 20 1 0 24 2 0 15 1 0 4 3 1 18 50 37 35 1 0 17 1 0 41 43 36 4 1 0 24 chain 277338 chr6 171115067 + 115866834 115870897 L1PA10 4194 + 175 4150 14788 14 4 0 10 3 0 10 2 0 7 11 7 9 2 0 8 1 0 10 1 0 21 2 0 15 1 0 8 56 30 11 2 0 18 1 0 8 2 1 8 1 0 12 17 15 6 1 0 79 4 2 9 0 1 50 0 3 361 39 41 34 2 3 44 1 2 212 9 6 19 27 0 165 0 1 9 24 5 173 0 2 67 10 11 57 3 0 8 0 2 78 0 1 80 1 0 35 15 1 51 6 10 221 2 6 91 0 1 198 0 2 6 1 0 73 0 8 25 1 0 52 0 5 25 0 1 7 1 2 120 0 1 14 1 4 26 1 4 44 1 0 170 13 6 314 6 7 528 0 1 95 1 0 30 9 5 33 chain 45920 chr6 171115067 + 115890713 115891253 L1PA6 6164 - 8 551 62113 269 4 7 267 chain 67047 chr6 171115067 + 115900020 115900734 L1HS 6032 - 3 717 49634 714 chain 121669 chr6 171115067 + 115907753 115909323 THE1A-int 1579 + 0 1574 30490 235 0 2 124 5 6 304 3 2 122 23 22 103 0 1 311 0 1 278 0 1 62 chain 37832 chr6 171115067 + 115910182 115911396 MLT2A2 560 - 8 560 72365 75 0 2 58 0 11 127 689 16 48 10 9 23 1 0 183 chain 186303 chr6 171115067 + 115913843 115915927 L1PA4 6152 + 4067 6152 20393 1233 0 1 851 chain 13527 chr6 171115067 + 115936535 115936693 L1PA4 6152 - 448 606 146254 158 chain 40483 chr6 171115067 + 115936693 115937152 L1PA4 6152 + 5691 6151 68617 206 0 1 253 chain 317134 chr6 171115067 + 115966015 115970147 L1P3 4156 + 0 4137 12721 251 2 1 22 13 13 33 1 0 605 5 0 6 0 5 138 0 1 143 0 1 83 28 15 151 1 0 17 21 24 240 1 0 6 0 1 144 5 7 118 2 1 201 0 3 24 1 0 96 1 0 4 0 1 267 5 8 4 1 0 82 3 0 4 8 0 375 0 3 275 12 24 43 0 2 27 5 9 113 1 2 114 0 3 41 13 13 343 2 0 7 2 1 22 chain 56210 chr6 171115067 + 115970645 115971312 L1PA7 6471 + 5778 6447 55015 527 6 8 134 chain 281827 chr6 171115067 + 115977446 115981283 L1PB1 5432 - 8 3820 14544 4 1 0 16 1 0 13 1 0 21 1 0 23 3 1 14 1 0 4 3 1 16 9 0 11 2 0 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 6 2 9 1 0 13 4 3 17 1 0 8 6 3 86 1 3 6 2 0 14 0 3 176 3 4 112 0 1 70 8 0 19 10 14 39 0 23 577 15 14 210 2 4 237 1 2 238 1 0 243 3 0 5 9 4 157 6 0 350 3 0 56 6 0 57 9 8 715 1 11 33 chain 23331 chr6 171115067 + 115981283 115981621 L1PB1 5432 + 1270 1612 113645 125 2 1 6 2 0 5 2 0 100 19 28 77 chain 153022 chr6 171115067 + 116017299 116019199 L1PA7 6471 + 4545 6469 24225 123 0 4 44 0 16 223 1 0 668 0 5 11 0 1 4 14 10 230 0 1 116 0 1 32 1 0 200 5 6 73 0 1 155 chain 39988 chr6 171115067 + 116037110 116037644 LTR12D 1347 - 0 610 69336 217 0 1 28 5 80 13 4 1 149 17 20 101 chain 22219 chr6 171115067 + 116038639 116038981 THE1D 372 - 9 372 119268 117 3 9 36 17 18 52 0 4 19 9 10 23 0 10 36 1 0 29 chain 69576 chr6 171115067 + 116044087 116045071 L1PB1 5432 - 329 1310 48581 140 0 6 8 5 0 115 29 23 103 1 0 84 2 0 68 1 2 29 12 17 121 3 2 263 chain 42177 chr6 171115067 + 116049240 116050008 LTR1 825 + 28 817 66430 10 15 0 23 5 17 26 5 12 69 1 2 11 1 0 6 140 156 20 1 0 26 0 3 27 1 0 295 0 1 49 11 10 26 chain 12415 chr6 171115067 + 116056053 116056275 THE1D 372 + 109 333 150575 30 5 6 21 44 45 122 chain 422871 chr6 171115067 + 116063466 116068308 L1PA5 6144 + 1292 6144 9461 1020 0 1 249 0 4 141 0 1 468 0 1 1161 3 7 564 2 3 1077 4 0 6 5 7 142 chain 24164 chr6 171115067 + 116086017 116086315 AluYc 301 + 0 295 109407 72 4 0 39 4 5 179 chain 42252 chr6 171115067 + 116098652 116099129 L1PA4 6152 - 9 486 66331 477 chain 43314 chr6 171115067 + 116125715 116126327 L1PA11 4918 + 3907 4504 65026 422 16 8 11 1 0 45 2 1 13 2 0 68 5 3 9 1 0 17 chain 4466 chr6 171115067 + 116140087 116140157 MER67D 511 + 302 387 201163 22 6 21 42 chain 21530 chr6 171115067 + 116143937 116144403 L1PB1 5432 - 10 450 122045 18 14 12 22 1 0 22 27 22 18 16 6 6 2 0 16 1 0 44 18 16 16 0 6 30 2 0 9 2 0 3 2 0 12 1 0 9 1 0 21 3 0 9 1 2 40 0 1 59 0 1 4 5 4 12 chain 144889 chr6 171115067 + 116154501 116156327 LTR12C 1709 - 0 1709 25343 481 0 4 107 3 1 5 1 0 19 119 0 255 1 0 79 0 2 442 1 0 4 5 6 304 chain 6129 chr6 171115067 + 116155154 116155236 LTR12C 1709 - 695 777 87192 82 chain 57636 chr6 171115067 + 116157670 116158324 SVA_B 1603 + 908 1598 54168 13 4 0 14 0 41 14 1 0 608 chain 18162 chr6 171115067 + 116165839 116166228 L1MA3 4352 - 3 358 132433 18 3 0 3 1 0 14 1 0 23 12 10 20 3 1 25 0 1 24 4 0 91 73 52 39 1 0 34 chain 510669 chr6 171115067 + 116173169 116181264 L1PA7 6471 + 0 6469 6102 207 0 2 191 3 4 728 7 8 135 7 6 4 0 1 34 6 0 564 5 4 564 0 3 102 0 1 82 6 7 54 0 1 40 0 2 34 0 5 37 0 1 42 70 0 93 1597 0 528 3 2 55 1 2 293 2 0 318 0 3 107 4 1 258 0 1 62 1 2 80 0 4 950 0 2 57 9 17 155 0 1 256 3 1 109 9 30 209 4 0 10 chain 19878 chr6 171115067 + 116182619 116182995 THE1D 372 + 0 372 127560 15 0 2 15 1 0 16 9 0 8 3 4 14 15 16 48 0 1 41 59 60 132 chain 106323 chr6 171115067 + 116210087 116211469 LTR12C 1709 + 0 1709 35176 266 0 1 6 22 25 38 0 43 85 0 4 54 0 8 118 0 278 146 0 2 38 1 0 5 3 1 99 18 11 74 5 6 304 7 2 11 1 0 60 1 4 20 chain 120001 chr6 171115067 + 116248176 116249765 LTR12C 1709 - 0 1709 31061 84 16 7 390 11 4 15 22 0 46 50 0 18 0 47 261 1 0 15 0 119 322 0 43 338 chain 513290 chr6 171115067 + 116256217 116262668 L1PA7 6471 + 5 6470 5852 238 0 1 168 1 0 196 18 18 23 1 2 53 3 0 73 10 19 24 0 1 67 5 9 7 4 0 346 15 34 452 0 1 690 0 1 73 0 2 129 2 0 515 9 11 391 2 6 332 5 0 121 10 0 228 0 4 73 10 11 39 5 6 172 1 0 124 0 4 624 0 1 327 1 0 99 0 2 91 1 0 6 13 1 22 10 2 163 0 6 451 2 0 6 chain 37511 chr6 171115067 + 116270165 116270610 L1PA7 6471 - 1718 2164 72800 267 0 1 178 chain 15550 chr6 171115067 + 116270642 116270826 L1PA7 6471 + 4756 4940 139733 184 chain 58000 chr6 171115067 + 116270832 116271508 L1PA7 6471 + 4947 5623 53971 676 chain 11964 chr6 171115067 + 116271508 116271657 L1PA7 6471 + 5629 5785 152342 94 0 7 55 chain 54212 chr6 171115067 + 116271657 116272287 L1PA7 6471 + 5786 6415 56218 140 1 0 489 chain 32346 chr6 171115067 + 116273119 116273476 L1PA3long 6157 - 772 1135 79822 290 0 6 67 chain 70316 chr6 171115067 + 116273476 116274245 L1PA3long 6157 + 5388 6157 48258 769 chain 29481 chr6 171115067 + 116274343 116274651 AluYa5 310 - 2 310 86705 308 chain 560412 chr6 171115067 + 116281195 116287223 L1PA2 6032 + 1 6029 330 6028 chain 15028 chr6 171115067 + 116294430 116294625 L1PA7 6471 + 6169 6364 141240 144 2 0 5 9 11 35 chain 7850 chr6 171115067 + 116294626 116294719 L1PA7 6471 + 6366 6459 171999 93 chain 72897 chr6 171115067 + 116345432 116346233 L1PA3long 6157 - 2 801 47071 794 2 0 5 chain 432950 chr6 171115067 + 116362619 116367945 L1PA7 6471 + 4 6461 9238 144 0 6 6 8 5 239 1 3 72 1 0 423 2 1170 801 0 1 21 2 0 98 6 7 602 0 3 227 1 0 4 0 1 249 6 7 6 0 1 515 0 2 338 1 0 407 58 0 259 1 0 196 0 11 20 0 1 612 chain 32516 chr6 171115067 + 116387201 116387667 MLT2A1 477 + 0 477 79995 141 11 12 16 1 5 88 0 1 60 1 0 62 4 0 11 29 39 42 chain 26756 chr6 171115067 + 116412256 116412714 LTR12_ 688 + 0 677 97146 16 9 8 29 0 41 44 24 8 21 48 7 175 0 103 19 0 133 73 chain 246905 chr6 171115067 + 116412753 116415847 HERV9-int 5642 + 0 4824 16402 571 0 2 23 8 9 111 6 0 4 0 1 74 1 0 304 90 6 6 1 0 712 0 3 211 0 5 50 0 3 128 0 3 243 3 4 253 0 6 17 0 1 90 0 1795 177 0 1 11 chain 47843 chr6 171115067 + 116417476 116418107 LTR12 884 + 0 873 60597 24 2 1 17 0 8 290 1 2 36 2 0 202 0 236 57 chain 48704 chr6 171115067 + 116481984 116482514 L1PA3long 6157 + 5627 6157 59951 530 chain 23194 chr6 171115067 + 116484005 116484304 AluY 311 + 0 297 114699 19 3 0 107 0 1 16 0 3 7 10 7 137 chain 7169 chr6 171115067 + 116499409 116499496 5S 121 - 31 118 176273 87 chain 14715 chr6 171115067 + 116503077 116503380 L1PB1 5432 - 30 318 142222 10 1 0 22 1 0 24 2 0 13 2 1 10 2 0 14 24 13 14 1 0 44 1 0 15 0 7 33 1 7 7 2 0 9 7 3 12 1 0 6 1 0 24 chain 14237 chr6 171115067 + 116526248 116526425 MER107 203 + 20 203 143773 142 0 6 35 chain 22053 chr6 171115067 + 116540847 116541147 AluSc 308 + 10 302 120007 37 5 6 33 9 1 142 1 0 73 chain 20072 chr6 171115067 + 116563249 116563528 AluY 311 + 0 306 126908 18 1 0 5 1 0 100 1 0 9 0 1 28 0 14 46 0 16 39 2 1 29 chain 226311 chr6 171115067 + 116582028 116585573 L1PA13 3608 - 120 3522 17517 22 1 0 18 2 0 7 2 0 45 2 0 12 1 0 22 0 1 26 1 0 50 13 11 41 6 12 52 10 9 20 153 11 118 0 4 12 0 9 74 0 6 210 0 3 112 14 15 225 7 6 86 42 21 259 8 12 47 6 7 39 0 1 555 3 7 119 0 13 24 10 7 31 6 1 79 0 1 353 2 6 36 2 0 39 0 1 4 6 9 46 1 0 4 34 30 10 8 7 14 11 8 14 3 1 16 1 0 15 1 0 4 0 3 117 2 0 71 28 17 24 0 10 22 12 9 13 16 14 19 1 0 4 chain 24359 chr6 171115067 + 116595442 116595757 AluSp 311 + 0 296 108322 117 2 0 108 17 0 71 chain 154732 chr6 171115067 + 116605669 116607459 L1PA5 6144 - 1 1775 24013 8 7 0 106 2 0 45 12 5 1610 chain 116420 chr6 171115067 + 116622805 116624192 L1PA7 6471 - 4 1385 32305 9 0 2 835 1 0 19 5 0 117 4 5 131 1 0 233 2 0 30 chain 37965 chr6 171115067 + 116643091 116643552 LTR2 463 - 0 463 72182 88 12 13 215 0 1 146 chain 37282 chr6 171115067 + 116646914 116647375 LTR2 463 - 0 463 73110 88 12 13 111 0 1 250 chain 122186 chr6 171115067 + 116661650 116663159 L1PA6 6164 - 2 1502 30315 6 7 0 145 0 1 456 0 3 161 1 5 62 4 8 54 0 1 130 7 0 8 8 0 296 1 2 158 1 0 4 chain 517360 chr6 171115067 + 116663854 116670279 L1PA5 6144 + 0 6132 5441 119 1 15 22 0 12 551 20 20 226 0 16 188 9 0 245 0 3 495 0 1 91 9 18 281 5 6 4 0 1 50 0 1 65 0 4 2009 0 1 214 1 0 94 22 0 148 1 0 383 12 11 174 329 0 504 1 13 8 5 0 139 chain 24392 chr6 171115067 + 116735582 116735874 AluSp 311 - 18 311 108122 11 4 5 277 chain 33080 chr6 171115067 + 116790526 116791009 MER1A 529 - 0 529 79082 148 0 4 154 62 104 119 chain 24802 chr6 171115067 + 116796987 116797282 AluSc5 308 + 1 295 105884 256 2 1 37 chain 12170 chr6 171115067 + 116798942 116799507 L1PB1 5432 - 10 244 151537 13 6 5 12 1 0 22 1 0 24 2 0 14 9 6 18 28 16 11 1 0 44 309 0 16 2 1 32 chain 183275 chr6 171115067 + 116808334 116810642 L1PA7 6471 - 6 2333 20652 7 3 0 101 18 0 34 9 10 6 2 0 109 0 33 28 0 1 46 0 1 459 7 9 15 0 4 733 0 2 48 0 1 7 10 6 226 0 1 4 1 0 403 0 1 32 chain 154520 chr6 171115067 + 116810642 116812685 L1PA7 6471 + 2216 4136 24032 238 14 6 181 1 0 53 2 1 5 0 1 196 3 7 593 1 0 31 0 1 156 121 1 68 0 1 247 0 1 133 chain 8600 chr6 171115067 + 116812117 116812221 L1PA7 6471 + 2890 2994 167731 104 chain 507543 chr6 171115067 + 116822032 116828173 L1PA6 6164 + 0 6153 6362 326 6 0 123 19 0 117 1 0 226 0 16 169 0 1 197 0 1 877 0 1 108 4 5 524 0 1 198 0 2 287 5 0 6 2 0 4 0 1 127 1 0 250 1 0 135 0 1 150 0 14 1059 0 1 253 2 1 131 0 4 78 0 2 607 4 6 144 chain 106704 chr6 171115067 + 116829890 116831433 L1PB3 3668 + 1746 3287 35061 81 28 22 65 14 17 185 21 7 249 1 0 161 0 20 114 6 5 316 2 0 15 3 0 98 0 1 50 59 60 75 chain 3038 chr6 171115067 + 116842176 116842208 MLT2B1 522 - 4 36 224265 32 chain 10170 chr6 171115067 + 116848974 116849124 L1PA8 5853 + 5705 5853 159752 35 2 1 19 2 1 92 chain 14687 chr6 171115067 + 116910416 116910630 MER30 238 - 0 238 142302 39 3 0 41 0 6 22 8 0 7 1 30 93 chain 29019 chr6 171115067 + 116910780 116911135 THE1A 353 - 0 353 88909 151 1 0 92 1 0 110 chain 27590 chr6 171115067 + 116925437 116925777 THE1B-int 1605 - 5 345 94380 340 chain 46317 chr6 171115067 + 116925777 116926531 L1PB1 5432 + 4686 5430 61757 156 3 2 147 3 6 53 0 1 48 7 15 24 1 0 9 1 0 10 6 2 9 2 0 54 0 2 12 1 0 43 5 4 13 2 0 6 16 6 19 2 0 6 1 0 13 0 5 6 6 0 13 1 0 21 0 7 5 2 1 18 2 0 8 chain 50454 chr6 171115067 + 116933794 116934524 L1PA8A 6298 + 5527 6287 58678 88 1 0 4 0 1 240 29 33 248 45 71 75 chain 558089 chr6 171115067 + 116959865 116965997 L1PA3long 6157 + 4 6142 493 875 0 2 2385 0 4 2872 chain 26962 chr6 171115067 + 116977231 116977546 AluSp 311 - 1 311 96400 185 5 0 125 chain 35226 chr6 171115067 + 117000329 117001158 MER41B 635 + 0 561 75891 110 1 4 12 4 5 30 0 1 21 1 0 6 0 1 140 45 50 71 282 5 10 1 0 95 chain 24009 chr6 171115067 + 117003150 117003495 AluY 311 + 3 288 110272 128 62 0 104 0 2 51 chain 30948 chr6 171115067 + 117007873 117008412 L1PREC2 3366 - 343 852 82604 11 1 6 27 30 16 11 4 1 25 0 1 4 3 0 15 6 1 14 28 24 13 3 0 5 2 1 42 1 0 54 2 0 238 chain 173416 chr6 171115067 + 117013911 117015833 L1PA4 6152 - 12 1934 21662 1922 chain 2947 chr6 171115067 + 117033548 117033579 U2 167 + 0 31 226112 31 chain 36697 chr6 171115067 + 117038635 117039289 MER50B 698 - 0 669 73963 98 10 11 107 23 20 56 1 0 123 17 8 34 22 48 23 74 75 66 chain 187093 chr6 171115067 + 117059257 117061324 L1PA3long 6157 + 3237 5310 20328 277 0 1 445 1 0 402 0 4 427 0 2 515 chain 75762 chr6 171115067 + 117061324 117062159 L1PA3long 6157 + 5314 6149 45613 835 chain 4621 chr6 171115067 + 117071830 117072002 L1MA4 2864 + 2671 2805 199394 14 91 55 25 7 5 35 chain 4642 chr6 171115067 + 117077967 117078077 Tigger1 2417 + 2298 2417 199160 41 26 9 11 10 36 22 chain 225411 chr6 171115067 + 117095984 117098546 L1PA5 6144 - 14 2634 17563 98 1 0 195 0 53 1219 0 5 628 1 2 420 chain 34044 chr6 171115067 + 117098779 117099243 L1PB2 3958 - 120 572 77558 59 6 5 22 2 0 73 1 0 62 1 0 22 0 1 54 2 0 88 4 0 13 2 0 53 chain 36935 chr6 171115067 + 117118049 117118458 L1PA3long 6157 - 1 410 73606 409 chain 182383 chr6 171115067 + 117133804 117135924 L1PA6 6164 + 4036 6161 20748 508 0 1 769 0 5 507 0 1 327 2 0 7 chain 551477 chr6 171115067 + 117137686 117144035 L1PA2 6032 + 0 6031 1255 1020 0 6 697 326 0 1517 0 1 2633 0 1 156 chain 8050 chr6 171115067 + 117144089 117144242 MSTA-int 1630 - 930 1085 170762 68 11 14 17 22 21 35 chain 2471 chr6 171115067 + 117159235 117159263 L1PA3long 6157 + 5279 5307 233477 28 chain 59200 chr6 171115067 + 117159264 117159960 L1PA3long 6157 + 5312 6044 53284 308 0 35 349 1 2 38 chain 8878 chr6 171115067 + 117159960 117160069 L1PA3long 6157 + 6045 6154 166243 109 chain 4858 chr6 171115067 + 117162845 117162903 L1MDa 1598 - 453 511 196691 58 chain 215829 chr6 171115067 + 117172931 117176371 L1PA11 4918 + 1136 4629 18120 560 1 0 7 0 1 79 24 11 18 1 2 103 0 2 85 0 390 14 5 1 11 2 1 117 1 2 7 1 0 216 300 0 67 16 14 130 0 1 85 0 16 232 0 1 117 0 1 4 1 0 302 5 1 78 1 0 45 39 41 430 5 0 61 11 12 6 2 0 15 0 3 29 20 18 6 0 1 9 2 1 22 19 9 10 13 9 10 6 5 12 3 1 11 8 2 13 1 0 5 19 13 18 chain 96174 chr6 171115067 + 117177887 117179072 L1PA7 6471 - 1 1174 37776 272 0 5 179 1 0 637 0 10 6 3 0 16 23 0 48 chain 9327 chr6 171115067 + 117233182 117233294 L1PA16 3655 + 3425 3537 163907 112 chain 26683 chr6 171115067 + 117235102 117235603 L1MA4 2864 - 55 520 97373 26 0 1 16 1 0 3 1 0 23 11 5 11 11 0 7 51 33 13 4 1 140 6 9 22 3 2 5 0 2 111 2 0 20 0 1 14 chain 19400 chr6 171115067 + 117305341 117305688 THE1B 368 + 0 368 128949 44 0 15 22 14 10 78 1 0 8 0 1 10 61 71 109 chain 8837 chr6 171115067 + 117318955 117319184 MER4C 627 + 359 627 166450 19 21 64 53 74 70 62 chain 11235 chr6 171115067 + 117334916 117335086 L1PBa 3878 - 2335 2504 155280 69 23 22 78 chain 183614 chr6 171115067 + 117335091 117339511 L1PB1 5432 + 2725 5326 20617 109 0 1 95 0 4 443 1422 0 16 7 8 27 48 0 81 17 21 203 4 7 335 51 27 67 1 0 28 7 9 340 1 0 82 3 0 176 8 9 31 311 1 258 15 11 20 1 0 12 1 0 12 5 1 9 2 0 49 21 19 41 4 3 21 18 7 18 chain 112854 chr6 171115067 + 117335742 117337160 LTR12C 1709 + 0 1709 33415 268 1 6 20 14 15 92 0 1 99 8 9 209 0 118 20 0 5 50 0 2 159 0 51 100 0 4 212 0 1 15 0 101 55 1 2 13 1 0 66 0 1 15 chain 4989 chr6 171115067 + 117346121 117346183 MLT1A0 366 - 2 64 195262 62 chain 9933 chr6 171115067 + 117350583 117350705 L1PA6 6164 - 5 124 160915 7 3 0 112 chain 207331 chr6 171115067 + 117359041 117361780 L1PA6 6164 - 2 2851 18696 215 7 8 50 0 1 133 5 6 260 0 1 6 41 92 585 2 24 10 23 1 167 1 2 749 33 89 44 16 18 7 5 0 209 0 1 171 chain 181085 chr6 171115067 + 117379685 117381849 L1PA7 6471 - 2 2156 20891 8 5 0 22 0 1 216 13 0 498 0 1 13 1 2 87 1 0 147 0 5 520 1 0 441 0 1 124 0 1 67 chain 15972 chr6 171115067 + 117387373 117387615 L1MA2 4263 - 150 383 138442 8 1 0 39 14 8 92 1 0 9 2 1 76 chain 77978 chr6 171115067 + 117391572 117392709 L1PB2 3958 - 124 1241 44524 59 2 1 21 21 19 53 1 0 64 1 0 62 27 25 75 1 0 4 1 0 12 2 0 63 5 0 13 1 0 56 2 0 90 4 0 6 5 8 150 11 12 117 1 0 207 chain 33830 chr6 171115067 + 117395499 117395899 THE1B-int 1605 + 0 400 77893 400 chain 86891 chr6 171115067 + 117401618 117402611 L1PA5 6144 - 760 1750 40828 90 1 0 323 0 1 348 3 0 228 chain 58410 chr6 171115067 + 117402611 117403341 L1PA5 6144 + 5406 6142 53740 127 0 1 143 13 8 391 5 19 40 4 0 7 chain 21941 chr6 171115067 + 117404072 117404406 THE1C 375 + 16 363 120458 35 0 11 74 9 10 39 21 23 142 2 1 12 chain 5024 chr6 171115067 + 117404458 117404521 MER45A 178 - 24 87 194890 63 chain 54480 chr6 171115067 + 117410997 117411684 L1PA8 5853 - 3 686 56043 87 4 3 17 1 0 39 0 1 10 1 0 14 2 1 70 2 0 44 1 0 385 0 2 10 chain 73331 chr6 171115067 + 117413380 117414173 L1PA2 6032 - 7 800 46870 793 chain 65773 chr6 171115067 + 117414173 117414890 L1PA2 6032 + 4527 5244 50031 717 chain 531393 chr6 171115067 + 117416433 117422572 L1PA5 6144 - 0 6141 4031 466 0 2 382 1 0 323 0 1 1198 0 1 190 0 1 209 1 0 132 0 1 42 2 0 38 1 0 852 1 0 203 0 3 108 0 1 755 1 2 285 0 4 543 0 1 19 31 23 356 chain 566273 chr6 171115067 + 117423294 117429326 L1HS 6032 + 0 6032 135 6032 chain 137181 chr6 171115067 + 117443364 117445034 L1PA7 6471 - 12 1691 26606 648 1 3 62 0 1 117 1 6 11 0 1 88 0 1 572 1 0 169 chain 76047 chr6 171115067 + 117445039 117445938 L1PA7 6471 + 3862 4762 45450 131 9 10 759 chain 28339 chr6 171115067 + 117453101 117454184 MLT2A1 477 - 2 477 91802 35 7 3 11 364 28 13 4 0 104 305 38 39 0 1 24 0 1 8 4 1 150 0 4 15 chain 11935 chr6 171115067 + 117466183 117466324 THE1C-int 1605 - 645 786 152460 141 chain 126005 chr6 171115067 + 117471195 117472751 THE1B-int 1605 - 15 1605 29095 32 1 0 64 0 1 324 1 2 134 1 0 4 0 1 359 0 8 207 1 26 428 chain 22868 chr6 171115067 + 117472763 117473121 THE1B 368 - 12 368 116241 78 1 2 32 7 0 70 3 2 73 9 10 19 6 7 21 0 5 22 2 0 15 chain 180152 chr6 171115067 + 117500000 117502161 L1PA7 6471 + 4304 6470 20977 598 9 13 69 1 2 561 0 1 65 5 4 670 11 12 167 1 0 4 chain 541965 chr6 171115067 + 117502980 117508987 L1PA3long 6157 + 0 6157 2511 152 0 1 102 0 1 521 1 129 140 1 0 4171 0 21 919 chain 550193 chr6 171115067 + 117565915 117571941 L1PA2 6032 + 0 6027 1423 74 0 1 165 0 1 16 1 0 175 5 0 6 0 5 5584 chain 8820 chr6 171115067 + 117574134 117574229 L1PA2 6032 + 5937 6032 166552 95 chain 5863 chr6 171115067 + 117578567 117578671 MSTD 398 + 1 112 186554 18 0 10 5 2 0 38 15 14 26 chain 27824 chr6 171115067 + 117603415 117603762 THE1C 375 + 0 347 93613 23 1 0 162 0 2 71 1 0 89 chain 36711 chr6 171115067 + 117631553 117632048 L1PA8 5853 - 0 494 73940 29 10 11 52 2 1 19 2 1 61 1 0 68 4 6 41 1 0 18 1 0 4 0 1 182 chain 485321 chr6 171115067 + 117650839 117657108 L1PA8A 6298 + 59 6289 7547 5 3 0 6 2 0 8 6 1 15 1 7 18 52 40 14 8 9 6 2 0 13 10 7 13 1 0 8 1 0 7 1 0 7 2 1 13 17 12 39 1 0 20 6 0 80 2 0 16 18 11 334 1 0 6 1 2 102 1 0 161 0 1 87 4 1 12 5 0 83 1 0 53 6 8 75 1 2 345 0 3 5 3 0 302 0 1 298 0 2 192 8 4 620 0 2 236 9 7 10 10 10 7 8 0 10 1 5 53 0 1 131 0 5 262 1 8 245 6 0 823 0 4 205 0 1 330 2 1 53 4 6 24 0 1 358 1 4 353 chain 105582 chr6 171115067 + 117695009 117696593 L1PB1 5432 + 3656 5422 35355 70 36 60 9 8 0 363 0 14 32 0 1 299 3 7 116 12 182 166 0 1 103 6 10 14 3 4 7 1 0 24 8 6 14 5 1 9 2 0 30 0 1 18 7 8 11 1 0 45 1 0 13 26 14 18 3 1 5 1 0 10 6 4 20 8 7 20 1 0 11 1 0 18 chain 24027 chr6 171115067 + 117702606 117703041 L1PB3 3668 - 48 446 110177 6 1 0 15 7 4 13 2 1 11 8 4 37 3 1 28 4 0 15 23 7 17 11 7 63 2 1 100 1 0 68 chain 20907 chr6 171115067 + 117719878 117720148 AluSc8 310 + 23 299 124256 108 11 15 122 0 2 29 chain 141495 chr6 171115067 + 117728794 117730387 L1PA4 6152 + 4555 6152 25901 74 0 1 174 0 1 63 0 1 1274 0 1 8 chain 6831 chr6 171115067 + 117736981 117737075 MER5A1 166 + 38 127 178718 6 5 0 83 chain 13589 chr6 171115067 + 117741587 117741738 L1PA4 6152 + 5985 6136 146014 151 chain 12246 chr6 171115067 + 117744206 117744456 L1PB1 5432 + 5188 5418 151220 32 2 1 16 1 0 44 1 0 15 2 0 6 16 6 19 23 21 24 1 0 19 1 0 13 1 0 14 chain 175610 chr6 171115067 + 117749041 117751601 L1MA1 4479 - 317 2886 21384 11 1 0 9 4 3 32 2 0 29 8 7 119 9 5 17 0 1 12 0 1 57 2 0 5 0 1 7 2 0 20 1 0 71 1 0 16 2 0 25 1 0 137 0 1 56 3 0 131 3 0 7 1 0 119 5 0 12 1 0 32 18 41 21 38 37 119 0 1 15 2 0 27 1 0 86 5 0 68 1 0 33 2 0 103 3 2 37 9 11 211 0 1 112 1 0 5 0 1 49 1 2 6 1 0 111 41 57 93 1 2 13 5 4 229 3 8 36 0 1 84 chain 25787 chr6 171115067 + 117763521 117763870 THE1B 368 - 0 368 100922 39 15 23 138 2 0 109 0 15 19 2 0 25 chain 7171 chr6 171115067 + 117778896 117779005 U6 107 - 0 107 176261 40 4 5 44 3 0 18 chain 9801 chr6 171115067 + 117784571 117784734 Tigger3a 397 + 149 320 161591 88 20 0 10 7 5 13 0 30 25 chain 131406 chr6 171115067 + 117794985 117797026 MER41-int 2638 - 2 1815 27775 80 0 1 138 0 2 313 2 0 7 4 0 35 5 6 72 257 8 117 3 0 189 1 0 121 0 2 165 0 5 52 1 0 8 5 3 30 1 22 41 0 1 158 22 23 4 1 0 129 0 1 80 chain 20073 chr6 171115067 + 117795653 117795887 L1PA5 6144 + 5905 6139 126905 234 chain 20606 chr6 171115067 + 117837804 117838129 THE1B 368 - 12 368 125274 50 0 6 6 1 0 35 0 1 18 34 44 22 3 2 117 0 15 25 0 2 9 1 0 4 chain 119862 chr6 171115067 + 117838135 117839662 THE1B-int 1605 - 6 1592 31099 114 0 1 121 1 0 11 0 1 13 0 1 119 0 2 97 1 16 24 0 7 113 1 6 497 1 26 321 0 3 93 chain 19721 chr6 171115067 + 117839676 117840019 THE1B 368 - 0 368 128037 64 0 2 9 1 0 22 65 76 19 0 2 6 4 0 109 0 15 44 chain 14132 chr6 171115067 + 117841290 117841507 MER30 238 - 0 237 144100 58 1 0 22 0 6 22 5 0 6 11 31 92 chain 25505 chr6 171115067 + 117858424 117858713 AluY 311 + 9 299 102198 123 0 1 166 chain 42392 chr6 171115067 + 117877561 117878212 L1PB4 2604 - 35 694 66161 17 3 0 55 8 10 58 0 2 15 2 0 23 7 5 58 4 0 65 0 3 6 2 0 127 5 7 29 0 3 82 0 3 14 0 1 6 4 3 45 1 7 15 chain 140999 chr6 171115067 + 117916578 117918602 L1PB1 5432 - 9 2010 25986 4 1 0 14 15 13 22 1 0 24 2 0 14 14 11 23 11 0 4 1 0 13 1 0 43 2 1 19 0 2 33 0 1 16 31 20 8 1 0 23 8 0 8 17 16 75 0 2 132 3 5 172 0 2 97 1 0 46 0 1 44 4 7 444 0 5 66 0 1 250 42 45 275 chain 34705 chr6 171115067 + 117933022 117933470 MER4A1 472 + 1 472 76614 14 0 2 215 0 21 45 4 0 6 12 16 152 chain 35908 chr6 171115067 + 117933747 117934254 LTR10F 562 - 0 562 75006 57 1 2 185 4 0 15 31 37 12 0 24 10 1 29 191 chain 51338 chr6 171115067 + 117936436 117937027 LTR10C 591 + 0 591 58076 591 chain 41288 chr6 171115067 + 117939205 117939803 HERVIP10FH-int 2884 + 165 762 67546 23 0 1 16 11 10 41 0 2 29 14 11 19 0 1 5 1 0 71 2 0 238 16 17 72 0 1 40 chain 49633 chr6 171115067 + 117942578 117943170 LTR10C 591 + 0 591 59291 13 0 1 60 2 0 517 chain 153457 chr6 171115067 + 117947501 117950112 MER4-int 2692 + 57 2385 24165 16 16 17 50 18 126 5 0 1 38 50 0 117 1 3 132 0 1 32 1 2 61 0 1 26 2 6 34 5 1 162 11 5 26 88 0 118 7 8 75 1 0 123 0 1 72 0 1 99 3 4 47 9 16 24 6 1 162 0 1 62 0 5 15 0 1 26 1 0 53 0 1 20 0 1 89 0 19 51 296 5 253 0 3 7 0 2 101 chain 3599 chr6 171115067 + 117948310 117948350 MER4-int 2692 + 926 966 213669 40 chain 46963 chr6 171115067 + 117955998 117956609 LTR12 884 - 12 884 61239 145 0 103 110 5 8 106 0 22 37 0 133 208 chain 507765 chr6 171115067 + 117966474 117972846 L1PA7 6471 + 0 6469 6345 321 7 5 80 8 0 152 11 10 109 20 40 272 5 6 29 0 22 228 0 2 354 0 1 31 0 1 493 4 9 231 1 2 232 13 6 70 0 4 27 0 34 222 6 3 215 0 1 121 0 1 44 0 6 160 1 5 205 1 2 73 0 1 172 0 3 14 0 1 189 0 2 127 0 1 256 6 5 501 1 0 402 0 1 8 0 2 107 2 0 82 1 0 96 0 4 611 0 4 51 chain 44512 chr6 171115067 + 117972911 117973461 MLT2A2 560 - 0 560 63565 54 0 1 4 1 0 88 0 11 126 1 0 276 chain 23248 chr6 171115067 + 117974415 117974703 AluYc 301 + 4 294 114450 116 0 2 172 chain 30338 chr6 171115067 + 117978378 117979108 LTR7B 505 + 0 490 83810 108 0 10 57 0 38 12 3 27 15 312 0 13 0 2 83 1 0 76 14 13 36 chain 29364 chr6 171115067 + 117979969 117980389 LTR7B 505 - 10 505 87224 41 14 13 79 1 0 82 0 2 22 19 81 59 1 11 12 0 3 90 chain 260634 chr6 171115067 + 117982196 117985889 HERVH-int 3825 - 0 3780 15659 809 1 0 46 169 3 505 2 1 455 4 6 15 0 35 107 22 22 41 0 1 10 0 1 161 1 0 4 9 10 162 9 0 207 15 0 30 49 52 347 3 8 7 2 0 15 0 2 6 137 365 23 0 1 35 1 0 257 0 1 8 7 10 12 chain 25985 chr6 171115067 + 117985945 117986363 LTR7B 505 - 10 505 100076 41 18 17 75 1 0 43 0 1 7 1 89 27 44 20 58 0 11 13 0 3 90 chain 33943 chr6 171115067 + 117986519 117986975 LTR2 463 - 0 463 77702 52 5 6 29 13 14 206 4 9 147 chain 5429 chr6 171115067 + 118025540 118025756 MER58A 224 - 9 223 190721 46 104 91 31 22 33 13 chain 80078 chr6 171115067 + 118033442 118034460 MER11C 1089 - 33 1087 43552 207 5 4 61 6 14 171 33 36 226 1 18 57 0 3 34 0 5 112 0 1 105 chain 557113 chr6 171115067 + 118042459 118048602 L1PA3long 6157 + 0 6157 600 1460 0 4 926 0 4 146 0 2 2768 0 4 843 chain 5660 chr6 171115067 + 118054448 118054605 MSTB 430 - 13 175 188475 29 76 81 52 chain 466953 chr6 171115067 + 118066895 118074303 L1PA7 6471 + 5 6468 8151 563 0 423 195 0 8 480 1 6 117 8 9 216 0 1 58 0 1 391 0 1 162 1 2 49 2 1 305 0 3 100 0 4 54 0 2 347 1 0 317 5 6 158 0 1 21 1 0 282 0 4 259 1 197 40 6 4 127 0 1 22 1 2 11 0 2 5 5 25 228 0 9 86 1308 0 73 0 1 117 3 0 113 0 3 138 6 5 263 0 1 20 312 0 367 1 0 50 5 0 7 chain 113163 chr6 171115067 + 118071535 118072820 SVA_C 1631 + 16 1631 33329 4 0 1 657 1 78 71 10 266 521 4 0 17 chain 28995 chr6 171115067 + 118110924 118111228 AluYa5 310 - 6 310 89008 304 chain 447331 chr6 171115067 + 118119857 118125137 L1PA5 6144 - 12 5262 8836 192 0 1 352 0 1 219 0 1 72 1 0 522 1 0 29 1 2 2440 11 1 1074 0 1 6 1 0 50 9 0 135 1 0 4 1 2 74 24 0 46 0 11 15 chain 80780 chr6 171115067 + 118125163 118126239 L1P2 5180 - 4113 5178 43281 126 0 1 55 13 7 85 1 0 6 1 0 272 1 0 7 1 0 256 6 5 96 2 1 148 chain 448611 chr6 171115067 + 118126260 118131898 L1PA8 5853 - 96 5748 8801 16 2 1 52 1 0 9 2 1 70 2 0 46 1 0 553 8 5 670 1 0 19 6 25 9 0 5 217 0 8 38 0 1 147 0 2 583 0 1 65 0 1 122 2 3 173 0 1 31 1 2 10 24 8 633 1 0 87 1 2 115 4 0 165 0 1 125 6 0 314 1 0 423 3 2 210 0 3 124 3 4 151 0 1 127 1 2 65 0 4 114 0 1 85 chain 74519 chr6 171115067 + 118137063 118137900 L1PA5 6144 - 4 841 46261 837 chain 84119 chr6 171115067 + 118171659 118172847 MER4-int 2692 - 1180 2391 41850 39 7 8 28 6 5 25 4 20 237 1 0 48 1 0 134 0 1 88 6 7 106 0 4 43 4 5 60 1 0 49 4 7 171 5 0 10 0 5 111 chain 271618 chr6 171115067 + 118172849 118175962 L1PA4 6152 - 0 3116 15107 113 0 1 225 0 1 1033 1 0 283 0 1 373 11 9 909 0 1 160 0 2 5 chain 179036 chr6 171115067 + 118175965 118178018 L1PA4 6152 + 988 3038 21070 253 1 2 536 5 0 505 0 1 753 chain 25046 chr6 171115067 + 118184911 118185199 THE1B-int 1605 - 19 308 104566 39 0 1 249 chain 181883 chr6 171115067 + 118185263 118187308 L1PA5 6144 - 29 2074 20796 2045 chain 193632 chr6 171115067 + 118194387 118196720 L1PA7 6471 - 7 2337 19725 87 3 0 246 1 0 41 0 1 4 1 0 385 0 2 77 1 0 102 0 1 438 3 2 93 1 0 150 0 1 323 1 0 250 26 28 19 1 0 80 chain 26207 chr6 171115067 + 118198632 118198941 AluSp 311 + 1 310 99174 309 chain 19316 chr6 171115067 + 118205699 118205936 THE1C-int 1605 - 1367 1605 129195 220 1 2 16 chain 28414 chr6 171115067 + 118224175 118224479 AluYa5 310 - 7 310 91520 177 1 0 126 chain 37844 chr6 171115067 + 118250028 118250513 LOR1a 498 + 0 485 72348 80 1 0 13 2 3 389 chain 6064 chr6 171115067 + 118286817 118286895 MLT1B 390 - 7 85 184712 78 chain 58088 chr6 171115067 + 118286898 118287815 LTR12D 1347 + 399 1347 53931 137 22 54 108 1 18 22 27 3 78 31 5 23 0 1 4 1 0 151 37 33 11 2 1 27 0 7 16 1 0 3 2 0 123 0 33 90 chain 24084 chr6 171115067 + 118293627 118293988 THE1B 368 - 2 368 109844 47 14 13 64 1 0 12 1 0 16 0 1 4 1 0 4 10 19 17 1 0 169 chain 3840 chr6 171115067 + 118299891 118299957 MER53 195 + 0 67 209783 35 9 10 22 chain 506293 chr6 171115067 + 118317485 118323773 L1PA3long 6157 + 6 6157 6447 88 0 526 389 0 8 2109 672 0 51 1 0 714 0 1 2117 0 1 147 chain 17055 chr6 171115067 + 118350497 118350801 MER44A 345 + 68 345 135450 33 29 23 106 9 0 8 0 1 5 4 0 21 18 9 71 chain 38534 chr6 171115067 + 118358705 118359198 L1PA8 5853 + 5367 5853 71389 194 2 1 46 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 52411 chr6 171115067 + 118368995 118369568 L1PA4 6152 - 1952 2525 57344 573 chain 179048 chr6 171115067 + 118369568 118371538 L1PA4 6152 + 4181 6151 21069 1970 chain 19918 chr6 171115067 + 118382838 118383140 MER1B 344 - 0 318 127407 56 13 22 46 4 0 106 19 30 58 chain 26774 chr6 171115067 + 118385123 118385471 THE1B 368 - 0 361 97070 80 2 1 119 1 0 104 5 20 37 chain 29637 chr6 171115067 + 118391017 118391329 AluYb8 318 + 0 312 86105 312 chain 37638 chr6 171115067 + 118433011 118433738 MER41C 542 + 0 507 72639 49 0 1 142 227 0 128 8 11 72 1 4 100 chain 113168 chr6 171115067 + 118447438 118448679 L1PA3long 6157 - 1294 2536 33296 676 0 1 565 chain 118767 chr6 171115067 + 118448679 118449978 L1PA3long 6157 + 4852 6151 31507 1299 chain 13806 chr6 171115067 + 118477418 118477595 MER4E 760 - 24 200 145245 121 7 0 26 0 6 23 chain 20434 chr6 171115067 + 118477595 118477836 L1PA6 6164 + 5913 6160 125797 156 0 6 85 chain 40053 chr6 171115067 + 118478548 118479093 MLT2A2 560 - 0 560 69244 85 1 3 59 5 16 217 12 11 153 0 3 13 chain 10270 chr6 171115067 + 118504554 118504663 L1PA3long 6157 + 6048 6157 159286 109 chain 3822 chr6 171115067 + 118510788 118510833 MER57B2 428 - 2 47 210067 45 chain 30682 chr6 171115067 + 118510833 118511252 MER57A1 433 - 8 433 83067 37 17 21 47 1 2 35 0 1 282 chain 175479 chr6 171115067 + 118511468 118513858 MER57-int 2662 - 193 2560 21397 33 22 16 81 6 0 10 2 3 29 10 6 29 4 8 38 5 6 228 5 13 56 9 10 4 0 1 357 0 1 74 20 0 56 0 3 7 1 0 84 0 18 88 7 0 8 0 7 8 1 0 244 1 0 223 0 14 287 39 0 105 3 1 11 0 2 56 0 2 134 0 1 5 chain 60972 chr6 171115067 + 118540581 118541339 L1PA5 6144 + 5397 6143 52345 41 7 0 105 6 8 46 13 4 79 1 2 361 0 1 99 chain 18349 chr6 171115067 + 118546837 118547054 AluY 311 + 83 298 131936 50 2 0 165 chain 15299 chr6 171115067 + 118547669 118548010 L1MA4 2864 + 2495 2804 140494 175 4 1 11 123 94 28 chain 21912 chr6 171115067 + 118553443 118553731 AluSp 311 + 11 302 120580 53 17 19 13 0 1 205 chain 24049 chr6 171115067 + 118554135 118554427 AluSc 308 - 17 308 110044 168 1 0 123 chain 4248 chr6 171115067 + 118617559 118617618 MLT1J2 417 - 296 352 203898 33 4 1 22 chain 519942 chr6 171115067 + 118657413 118664165 L1PA7 6471 - 3 6471 5168 138 0 1 299 5 3 327 0 2 73 0 1 10 7 5 16 0 1 624 304 0 146 0 4 348 0 1 67 0 1 58 1 0 20 0 1 491 0 2 248 0 1 204 8 9 620 0 3 147 0 5 326 3 1 99 6 7 16 15 11 289 14 15 76 0 1 378 18 36 17 39 23 894 0 1 100 2 3 299 chain 27909 chr6 171115067 + 118664222 118664624 THE1C 375 - 0 375 93325 31 27 17 15 17 0 312 chain 27554 chr6 171115067 + 118682374 118682664 AluYd8 298 + 0 290 94491 290 chain 149766 chr6 171115067 + 118700545 118702340 L1PA7 6471 + 4672 6470 24653 100 0 1 651 0 1 184 5 4 326 0 1 516 0 2 8 1 0 4 chain 209393 chr6 171115067 + 118730673 118734398 L1PA13 3608 + 535 3435 18535 52 305 0 25 0 1 17 0 27 248 11 10 138 6 5 27 0 1 301 11 10 409 4 26 41 7 0 67 0 1 415 3 0 260 267 14 37 0 1 231 0 1 93 1 2 83 0 1 53 1 0 27 1 0 25 0 3 7 299 0 4 1 0 10 7 0 10 7 5 7 0 4 39 2 0 63 1 0 48 15 12 39 chain 17176 chr6 171115067 + 118741983 118742189 L1P3 4156 + 3376 3583 135093 60 0 1 146 chain 414564 chr6 171115067 + 118742196 118747371 L1P2 5180 + 2 5173 9680 148 2 1 42 8 7 44 8 7 195 19 0 69 1 0 50 1 0 218 0 15 451 0 1 921 0 1 224 9 7 211 0 1 132 0 1 139 6 2 282 1 0 60 1 5 56 1 0 41 0 4 658 1 2 271 0 3 185 0 1 184 2 0 124 0 1 116 1 0 207 1 0 46 1 0 38 chain 550902 chr6 171115067 + 118747979 118754113 L1PA3long 6157 + 9 6155 1326 452 0 1 266 0 1 519 0 1 1109 1 0 34 0 4 1681 0 1 279 0 4 1034 1 2 758 chain 29134 chr6 171115067 + 118754113 118754494 L1PA6 6164 + 5782 6162 88388 77 0 6 291 7 0 6 chain 33458 chr6 171115067 + 118754495 118754941 L1PA3long 6157 + 3259 3716 78479 260 5 6 72 0 10 109 chain 38722 chr6 171115067 + 118754953 118755431 L1PA3long 6157 + 3729 4207 71123 478 chain 83578 chr6 171115067 + 118755431 118756520 L1PA3long 6157 + 4209 5309 42085 595 10 15 148 0 1 187 0 5 149 chain 33199 chr6 171115067 + 118756520 118756951 L1PA3long 6157 + 5316 5751 78891 84 0 3 9 4 5 334 chain 36895 chr6 171115067 + 118764016 118764591 L1MA2 4263 - 3586 4140 73667 121 38 21 53 1 0 79 0 1 69 1 0 59 1 0 18 2 0 61 3 0 9 21 21 5 0 3 34 chain 8788 chr6 171115067 + 118816339 118816441 THE1C-int 1605 + 1489 1591 166725 102 chain 106771 chr6 171115067 + 118816824 118818792 Charlie3 2679 + 1035 2674 35042 90 39 35 100 0 3 38 0 1 129 89 90 95 0 1 88 331 2 169 3 0 44 1 0 135 1 0 54 3 4 22 3 4 11 5 6 311 1 2 70 0 33 7 33 0 18 0 1 5 3 0 10 7 8 53 chain 275725 chr6 171115067 + 118836920 118840260 L1PA7 6471 - 1 3368 14883 98 0 6 241 2 0 46 2 1 377 1 3 81 0 3 20 1 2 479 8 12 401 0 2 49 0 4 158 1 2 63 0 1 145 0 2 82 0 4 1085 chain 22542 chr6 171115067 + 118845341 118845605 AluY 311 + 0 281 117833 52 0 16 64 0 1 148 chain 2829 chr6 171115067 + 118912686 118912716 MER51A 677 + 199 229 228259 30 chain 8454 chr6 171115067 + 118919558 118919963 MLT1C 463 + 63 463 168541 43 241 236 23 11 10 35 9 10 43 chain 38677 chr6 171115067 + 118922742 118923209 MER41A 554 - 87 554 71184 467 chain 55850 chr6 171115067 + 118923218 118923987 MER41-int 2638 - 2 781 55214 54 3 0 129 22 39 186 0 2 54 0 4 23 1 0 22 4 0 213 3 0 35 3 1 17 chain 11477 chr6 171115067 + 118929077 118929221 MER41A 554 - 0 144 154394 144 chain 26620 chr6 171115067 + 118939592 118940457 HERV30-int 1034 + 137 735 97600 10 24 0 12 53 48 29 65 32 45 5 0 41 12 0 78 1 0 89 21 6 34 71 31 26 200 68 49 chain 65918 chr6 171115067 + 119008542 119009314 LTR17 781 + 0 781 50131 327 0 1 115 3 11 327 chain 3112 chr6 171115067 + 119039999 119040034 5S 121 + 55 90 222694 35 chain 7052 chr6 171115067 + 119078529 119078632 MLT1B 390 - 287 390 177088 76 1 0 5 2 3 19 chain 11035 chr6 171115067 + 119083921 119084061 L1PA16 3655 - 240 379 156071 26 0 1 98 2 0 14 chain 7418 chr6 171115067 + 119091819 119091908 Tigger3b 1229 - 33 123 174666 60 0 1 29 chain 27321 chr6 171115067 + 119107234 119107520 AluYc 301 + 0 286 95202 286 chain 30803 chr6 171115067 + 119115036 119115423 MLT2A1 477 + 0 385 82857 169 4 1 33 0 1 181 chain 313250 chr6 171115067 + 119117471 119121046 L1PA4 6152 + 3 6136 12880 606 0 2545 733 0 2 458 0 4 380 0 7 1398 chain 468300 chr6 171115067 + 119138297 119144106 L1PA8 5853 - 0 5800 8097 93 1 0 19 2 1 40 7 0 7 0 6 8 2 1 70 2 0 46 1 0 478 0 2 52 17 24 555 0 1 382 6 14 94 0 1 968 1 0 973 1 0 468 0 3 278 0 2 130 4 0 147 1 0 5 0 1 198 0 6 88 0 1 88 1 5 65 1 0 92 1 2 109 31 28 94 0 7 28 0 4 61 49 13 13 1 0 10 2 0 19 chain 463422 chr6 171115067 + 119155047 119161219 L1PA7 6471 - 7 5645 8273 153 1 14 160 0 3 209 0 1 18 1 0 98 0 3 104 1 3 72 0 2 312 0 5 205 1 0 531 0 1 78 0 2 490 0 2 52 0 1 392 0 4 25 2 3 133 32 0 198 0 9 131 4 0 376 0 9 24 0 1 464 569 0 267 0 6 496 11 13 177 0 4 259 0 2 126 chain 91828 chr6 171115067 + 119189513 119190582 L1PA6 6164 + 5082 6162 39015 233 0 5 378 0 2 162 0 4 296 chain 28933 chr6 171115067 + 119259934 119260263 L1PA7 6471 - 10 339 89308 329 chain 24777 chr6 171115067 + 119269481 119269778 AluY 311 + 1 301 106014 90 0 1 22 0 1 59 0 1 126 chain 34856 chr6 171115067 + 119272517 119272966 MER4A1 472 + 0 472 76400 14 0 4 172 7 5 122 0 20 110 0 1 24 chain 25441 chr6 171115067 + 119290101 119290475 THE1C 375 + 0 375 102491 20 1 2 108 11 15 30 7 3 11 8 9 151 1 0 26 chain 20206 chr6 171115067 + 119290823 119291078 L1PA7 6471 - 1 267 126512 74 0 9 174 0 2 7 chain 3521 chr6 171115067 + 119308406 119308489 MER58A 224 + 122 208 215050 11 2 0 5 18 23 14 0 1 4 1 0 28 chain 7015 chr6 171115067 + 119313655 119313813 MLT1A0 366 + 153 310 177366 17 61 60 80 chain 25677 chr6 171115067 + 119330410 119330779 THE1B 368 + 0 367 101380 63 40 41 64 3 0 126 1 0 61 0 1 11 chain 130360 chr6 171115067 + 119336307 119337855 LTR12C 1709 + 0 1709 28004 436 0 1 65 1 0 68 5 0 6 1 6 117 0 159 253 1 0 5 2 1 107 0 4 481 chain 45914 chr6 171115067 + 119359438 119359992 MER41A 554 + 0 554 62118 554 chain 64180 chr6 171115067 + 119362449 119363207 LTR17 781 + 0 781 50921 326 0 1 401 0 22 31 chain 11879 chr6 171115067 + 119368018 119368184 L1MA1 4479 + 3982 4148 152700 96 6 8 21 2 0 41 chain 116045 chr6 171115067 + 119368701 119370326 L1PREC2 3366 + 1379 2867 32438 383 3 0 235 0 1 506 143 15 233 3 1 39 15 14 44 7 3 14 chain 28572 chr6 171115067 + 119371689 119371992 AluYb8 318 + 0 304 90857 156 0 1 147 chain 120242 chr6 171115067 + 119403466 119405072 THE1D-int 1627 - 0 1627 30967 50 1 0 433 34 35 332 40 55 384 0 5 249 2 3 81 chain 21161 chr6 171115067 + 119406860 119407252 MSTA 426 - 29 426 123336 64 25 33 36 30 28 69 18 14 96 4 6 24 4 5 22 chain 30092 chr6 171115067 + 119417519 119417836 AluYb8 318 + 0 317 84509 317 chain 15080 chr6 171115067 + 119435129 119435326 MER44A 345 + 135 336 141087 38 0 4 159 chain 85250 chr6 171115067 + 119439615 119440699 MER11B 1079 + 0 1079 41441 259 3 0 153 0 2 137 45 44 144 0 1 32 8 2 280 0 2 23 chain 50241 chr6 171115067 + 119449085 119450444 MER4D0 881 + 0 801 58838 29 4 0 6 1 5 71 15 6 90 0 1 21 540 0 133 4 0 6 10 0 37 7 3 31 15 19 37 4 9 15 0 1 4 5 10 19 2 0 9 2 1 80 8 7 90 2 1 55 2 0 5 chain 30072 chr6 171115067 + 119457161 119457475 AluYb8 318 + 0 314 84594 314 chain 14727 chr6 171115067 + 119477493 119477667 L1PA5 6144 + 5970 6144 142176 174 chain 213263 chr6 171115067 + 119488016 119491107 L1PA8 5853 + 3128 5853 18278 83 0 1 938 0 1 150 0 3 172 33 0 457 1 0 73 1 6 61 9 11 70 358 23 4 1 0 188 0 3 150 0 1 39 1 0 48 2 0 10 0 3 56 1 0 9 1 0 8 1 0 4 29 22 18 2 1 19 1 0 93 chain 4797 chr6 171115067 + 119524112 119524335 MLT1A0 366 + 124 312 197396 17 152 117 54 chain 20443 chr6 171115067 + 119536139 119536363 L1PA4 6152 + 5916 6140 125777 224 chain 27268 chr6 171115067 + 119583977 119584330 MLT2A1 477 + 0 358 95379 141 1 2 25 1 5 185 chain 29663 chr6 171115067 + 119596460 119596770 AluYa5 310 - 0 310 85994 310 chain 3217 chr6 171115067 + 119634816 119634897 MER53 195 - 105 195 220620 15 9 8 28 15 25 14 chain 5987 chr6 171115067 + 119638620 119638868 L1MC1 2226 - 235 438 185366 11 3 0 13 16 7 30 56 32 10 7 1 22 44 41 36 chain 3454 chr6 171115067 + 119657532 119657575 MER5A 189 + 122 167 216112 12 0 2 31 chain 24266 chr6 171115067 + 119686739 119687090 THE1B 368 - 0 366 108867 82 0 2 41 35 45 29 1 0 27 0 4 136 chain 44608 chr6 171115067 + 119690307 119690948 LTR8 732 - 29 732 63470 54 2 0 66 27 56 157 1 0 8 0 26 24 17 27 285 chain 243254 chr6 171115067 + 119694769 119697575 L1PA4 6152 - 1152 3958 16604 1221 0 1 601 1 0 469 23 23 491 chain 97970 chr6 171115067 + 119697575 119698726 L1PA4 6152 + 5001 6151 37262 4 0 1 657 4 1 479 0 1 7 chain 19223 chr6 171115067 + 119707471 119707743 L1PA8 5853 + 5586 5853 129462 6 2 0 16 0 1 67 5 4 6 1 0 54 2 1 19 1 0 93 chain 532732 chr6 171115067 + 119721158 119727262 L1PA4 6152 + 12 6141 3882 1050 1 3 1735 0 11 320 1 0 46 1 0 79 9 7 515 0 1 856 1 0 461 6 1 146 1 17 44 0 4 109 0 1 723 chain 508649 chr6 171115067 + 119738837 119745187 L1PA7 6471 + 3 6407 6267 159 11 10 115 1 3 30 0 26 66 1 0 47 1 0 4 0 1 250 37 19 47 0 1 106 26 29 5 3 0 170 0 1 177 9 10 21 0 1 435 1 9 170 0 1 246 5 12 257 1 2 206 1 2 307 0 9 105 2 1 231 0 1 309 0 1 330 3 0 320 3 4 194 0 1 64 1 3 104 1 0 113 0 1 286 0 1 53 0 1 42 4 3 279 0 1 219 0 2 18 1 2 34 2 8 10 0 2 707 chain 122165 chr6 171115067 + 119761997 119763583 LTR12C 1709 + 0 1709 30326 17 11 25 356 0 1 35 0 1 29 15 9 176 0 2 68 0 118 112 50 0 20 0 41 102 1 0 5 3 1 106 11 4 177 0 4 247 0 8 45 chain 4052 chr6 171115067 + 119762816 119762866 LTR12C 1709 + 1109 1156 118256 3 1 0 4 4 2 38 chain 25258 chr6 171115067 + 119788204 119788560 THE1B 368 - 8 368 103428 120 4 3 5 1 0 9 6 9 45 1 0 27 0 4 138 chain 395524 chr6 171115067 + 119808462 119814667 L1PB1 5432 + 19 5424 10256 27 9 10 331 14 12 6 0 3 184 20 21 136 3 9 223 12 19 352 577 6 37 1 0 7 2 0 5 67 42 218 0 5 223 0 13 231 1 0 43 0 1 28 2 0 281 0 1 221 9 1 110 0 1 4 3 0 903 14 10 85 0 1 175 5 1 253 17 8 280 1 0 36 0 1 43 4 0 79 0 2 396 177 4 7 3 0 12 38 32 11 3 1 50 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 24 19 24 1 0 34 1 0 16 1 0 4 chain 45228 chr6 171115067 + 119809779 119810299 L1PA4 6152 + 5570 6081 62794 212 9 0 299 chain 4580 chr6 171115067 + 119810300 119810351 L1PA4 6152 + 6092 6143 199871 51 chain 91418 chr6 171115067 + 119874690 119875762 MER11C 1089 + 0 1073 39161 586 12 13 474 chain 39224 chr6 171115067 + 119951977 119952506 L1PA16 3655 - 63 588 70422 15 3 0 146 0 1 139 2 0 81 7 6 57 1 0 10 0 1 46 1 2 21 chain 65083 chr6 171115067 + 119985912 119986664 L1PA6 6164 + 5385 6139 50537 103 0 1 268 0 1 381 chain 25782 chr6 171115067 + 119986917 119987303 LTR12C 1709 + 913 1709 100954 37 0 207 60 42 11 135 0 1 49 0 233 63 chain 5908 chr6 171115067 + 120000619 120000773 MER31A 484 - 90 245 186107 13 40 45 21 6 0 43 13 15 18 chain 2802 chr6 171115067 + 120014924 120014954 L1P3 4156 - 537 567 228698 30 chain 27622 chr6 171115067 + 120053341 120053696 THE1A 353 + 0 353 94291 109 2 1 92 1 0 151 chain 3043 chr6 171115067 + 120067791 120067831 L1PA16 3655 - 67 104 224140 11 3 0 26 chain 174305 chr6 171115067 + 120067890 120069856 L1PA5 6144 - 0 1970 21561 843 0 4 1123 chain 30306 chr6 171115067 + 120069857 120070197 L1PA5 6144 + 3841 4181 83885 340 chain 2899 chr6 171115067 + 120071954 120071989 L1PA17 2846 - 1519 1554 227053 35 chain 87914 chr6 171115067 + 120075172 120076587 L1PA7 6471 - 10 1094 40406 290 9 10 118 0 2 46 2 3 123 0 1 60 336 0 38 3 0 146 0 3 244 chain 65408 chr6 171115067 + 120076606 120077401 L1P3 4156 + 3298 4103 50374 95 0 6 147 0 4 553 chain 35416 chr6 171115067 + 120092639 120093138 LTR10D 510 - 7 510 75663 84 2 0 177 8 10 123 15 13 22 2 8 66 chain 53160 chr6 171115067 + 120108743 120109414 LTR12_ 688 + 0 680 56916 152 0 1 44 1 0 118 7 0 200 1 17 148 chain 3334 chr6 171115067 + 120129949 120129987 MER41A 554 - 88 126 218343 38 chain 23493 chr6 171115067 + 120141065 120141321 L1PA4 6152 - 3 259 113159 256 chain 77487 chr6 171115067 + 120148553 120149753 L1PB1 5432 - 17 1234 44742 11 1 0 12 1 0 22 1 0 24 2 0 14 9 6 18 24 12 16 1 0 44 27 35 33 2 0 9 7 3 12 6 4 26 3 0 7 6 9 466 2 0 7 1 0 143 5 7 108 8 47 122 chain 91156 chr6 171115067 + 120227714 120228781 MER11C 1089 + 6 1079 39246 219 0 5 455 1 2 4 0 1 306 1 0 81 chain 83585 chr6 171115067 + 120245766 120246851 MER11A 1151 - 0 1119 42079 176 0 1 56 0 1 32 0 23 26 1 0 149 2 5 299 0 1 89 0 2 60 0 4 28 2 0 21 8 0 68 0 2 14 11 19 43 chain 7384 chr6 171115067 + 120257368 120257477 L1MB5 1630 - 216 325 174878 22 1 0 4 4 5 78 chain 18280 chr6 171115067 + 120270658 120270866 L1PA5 6144 - 0 208 132128 208 chain 28647 chr6 171115067 + 120273329 120273631 AluYa5 310 - 8 310 90529 302 chain 19730 chr6 171115067 + 120326678 120327045 THE1D 372 + 3 372 128013 12 0 2 31 24 15 37 1 0 28 0 4 33 57 61 5 0 3 106 1 0 32 chain 24724 chr6 171115067 + 120334924 120335327 L1MA1 4479 - 340 740 106299 61 10 12 114 9 5 29 24 28 28 1 0 17 2 0 16 1 0 74 1 0 16 chain 93849 chr6 171115067 + 120337051 120338116 L1PA5 6144 + 5069 6138 38398 202 0 4 12 0 1 586 1 0 264 chain 29523 chr6 171115067 + 120344767 120345164 L1PA10 4194 - 44 449 86556 7 0 1 26 3 0 143 2 5 14 0 2 48 0 3 28 0 1 49 0 1 77 chain 13575 chr6 171115067 + 120354984 120355148 L1PA5 6144 - 0 164 146068 164 chain 81906 chr6 171115067 + 120406511 120407428 L1PA5 6144 - 1 918 42728 917 chain 167486 chr6 171115067 + 120407428 120409344 L1PA5 6144 + 3301 5220 22336 208 1 0 888 2 1 233 0 5 22 1 0 154 0 1 407 chain 11963 chr6 171115067 + 120415213 120415347 L1PA6 6164 + 6026 6160 152349 134 chain 48510 chr6 171115067 + 120421073 120421670 LTR66 600 + 0 600 60096 401 4 9 72 3 0 62 0 1 55 chain 363927 chr6 171115067 + 120468977 120474268 L1PB1 5432 + 154 5391 11264 257 1 0 110 51 15 65 1 2 96 9 10 121 29 31 547 38 10 201 40 41 65 0 2 75 6 10 115 0 1 212 11 18 321 55 0 339 3 24 49 0 3 254 1 0 34 15 23 87 0 1 32 8 9 7 0 74 66 0 1 4 32 5 111 15 13 4 0 1 100 3 1 9 3 2 57 0 1 104 0 1 443 0 1 16 1 0 178 0 1 93 4 0 151 0 1 29 15 19 36 0 1 239 3 2 9 10 5 19 1 0 9 16 11 9 2 0 55 2 1 14 1 0 41 43 30 19 8 5 14 2 0 24 1 0 21 chain 87207 chr6 171115067 + 120476370 120477348 L1P1 4361 - 41 1016 40685 15 1 0 155 1 0 317 3 2 486 chain 43877 chr6 171115067 + 120480744 120481403 L1PA8 5853 - 0 655 64362 92 2 1 19 2 1 49 5 4 8 1 0 19 0 2 48 2 0 46 1 0 158 49 50 158 chain 95166 chr6 171115067 + 120496082 120497243 L1PA8A 6298 - 886 2050 38049 92 0 1 378 1 0 149 0 3 160 1 0 357 0 1 23 chain 62003 chr6 171115067 + 120497259 120498002 L1PA8A 6298 + 5525 6270 51899 141 0 2 602 chain 28849 chr6 171115067 + 120557663 120557977 AluYb8 318 - 5 318 89675 181 1 0 132 chain 69461 chr6 171115067 + 120565135 120565965 L1PA7 6471 - 1094 1943 48472 6 0 6 384 1 0 423 0 14 16 chain 85533 chr6 171115067 + 120565965 120567040 L1PA7 6471 + 5375 6458 41334 59 1 4 183 0 3 514 0 1 142 16 17 160 chain 193484 chr6 171115067 + 120571891 120574508 L1PA8 5853 + 3208 5847 19738 50 0 13 92 2 1 5 0 1 16 4 1 90 0 1 144 0 1 5 1 0 51 4 9 99 0 1 271 0 4 109 4 5 12 0 5 242 0 5 151 0 1 145 0 1 12 10 11 171 8 3 9 0 4 57 0 1 74 15 19 126 3 4 138 6 0 196 2 1 43 2 0 40 1 0 29 17 15 48 2 1 19 1 0 45 23 19 23 chain 3185 chr6 171115067 + 120583714 120583754 L1MA8 2339 + 2003 2042 221205 6 1 0 33 chain 477603 chr6 171115067 + 120584537 120590036 L1PA4 6152 - 1 6152 7812 190 0 1 806 0 5 146 0 1 24 1 0 368 10 0 258 0 4 931 0 4 132 5 6 920 0 2 245 0 3 252 0 5 47 0 657 303 17 0 265 3 0 576 chain 22402 chr6 171115067 + 120602773 120603055 AluSc8 310 + 25 300 118476 109 8 1 165 chain 301617 chr6 171115067 + 120613881 120685055 L1PA7 6471 - 9 6169 13338 141 15 16 116 1 0 564 0 5 134 0 3 536 2 0 62 0 1 74 1 2 285 4 178 35 0 1 341 0 1 17 0 1 113 1 0 157 0 2 42 0 3 5 24 5 74 0 2 5 0 2 14 8 9 13 0 1 167 1 2 181 65859 633 5 3 0 447 7 8 338 3 0 284 0 1 4 1 0 111 0 7 30 13 32 350 4 0 6 4 8 106 2 1 289 0 1 11 0 20 34 46 40 84 chain 112587 chr6 171115067 + 120637100 120638341 L1PA3long 6157 - 15 1259 33505 240 0 4 520 1 0 480 chain 25430 chr6 171115067 + 120675679 120676066 MER41B 635 + 32 397 102543 61 3 2 31 2 3 69 32 0 17 8 18 164 chain 220373 chr6 171115067 + 120685063 120688019 L1PA7 6471 + 2519 6461 17858 123 19 5 37 0 19 194 27 28 188 7 14 57 0 3 346 23 27 36 16 10 30 0 1 58 59 0 102 5 13 160 1 4 25 0 1 97 0 1 58 12 11 43 0 2 230 0 1 316 0 1010 368 1 0 93 0 2 22 0 4 203 chain 2968 chr6 171115067 + 120686237 120686281 L1PA7 6471 + 3642 3683 225705 8 3 0 33 chain 74530 chr6 171115067 + 120688190 120689183 L1PA8 5853 - 988 1992 46249 74 4 10 439 0 2 6 9 7 35 0 1 6 1 0 146 0 1 207 17 21 49 chain 66019 chr6 171115067 + 120689183 120690119 L1PA8 5853 + 4871 5815 49899 136 0 2 44 2 11 41 5 6 76 0 1 193 2 1 120 0 1 57 13 12 38 2 0 16 0 1 50 20 18 49 1 0 16 1 0 7 1 2 46 chain 34651 chr6 171115067 + 120724718 120725113 L1PA5 6144 - 3 394 76690 6 4 0 385 chain 29707 chr6 171115067 + 120725113 120725446 L1PA5 6144 + 5379 5712 85803 333 chain 93152 chr6 171115067 + 120738491 120739522 L1PA4 6152 - 2 1034 38556 383 0 5 301 4 0 343 chain 112774 chr6 171115067 + 120739522 120740819 L1PA4 6152 + 3803 5093 33452 832 1 0 241 14 17 149 14 5 46 chain 24307 chr6 171115067 + 120741794 120742180 THE1D 372 - 0 371 108620 148 2 1 23 16 18 103 4 5 19 18 0 23 1 0 17 0 2 12 chain 130801 chr6 171115067 + 120745273 120747226 L1PA13 3608 + 1524 3468 27909 92 0 2 145 3 7 9 3 4 105 10 11 36 2 3 48 0 5 337 2 0 5 6 8 47 30 43 185 1 2 216 4 5 35 50 30 119 7 0 93 1 0 12 1 0 32 1 0 58 0 2 53 2 0 62 1 0 52 1 0 9 2 0 40 7 5 7 2 0 20 chain 22013 chr6 171115067 + 120749821 120750087 AluSp 311 + 20 281 120167 110 5 0 151 chain 529667 chr6 171115067 + 120753738 120759839 L1PA5 6144 + 0 6120 4227 120 1 15 9 14 0 129 1 0 331 0 4 340 0 9 465 0 1 10 1 0 317 0 1 66 0 1 349 1 0 2520 0 1 179 0 3 977 3 4 33 1 2 234 chain 32031 chr6 171115067 + 120773271 120773674 L1PA11 4918 - 638 1040 80816 252 1 0 150 chain 5020 chr6 171115067 + 120776368 120776435 L1PA5 6144 + 5922 5989 194926 67 chain 12948 chr6 171115067 + 120776442 120776597 L1PA5 6144 + 5989 6144 148438 155 chain 11405 chr6 171115067 + 120783652 120783779 HERVH-int 3825 - 153 280 154679 127 chain 7338 chr6 171115067 + 120783779 120783860 LTR7 482 - 401 482 175168 81 chain 294795 chr6 171115067 + 120785118 120788826 HERVH-int 3825 - 0 3825 13715 487 8 218 848 0 12 159 15 10 66 0 10 299 4 31 818 2 1 87 1 0 49 2 1 7 0 20 46 1 0 25 3 0 14 126 0 13 28 0 24 1 0 9 2 1 30 12 7 310 0 11 212 chain 40713 chr6 171115067 + 120788828 120789279 LTR7 482 - 0 482 68285 187 0 31 264 chain 9829 chr6 171115067 + 120805811 120805952 Tigger1 2417 + 2211 2355 161458 36 3 6 102 chain 2866 chr6 171115067 + 120823392 120823426 HSMAR2 1300 - 1096 1130 227572 34 chain 243120 chr6 171115067 + 120827163 120830164 HERVL-int 5654 - 0 3011 16610 223 1 2 45 0 12 154 1 0 444 1 7 10 16 10 312 2 1 195 4 0 827 0 1 201 0 1 56 0 1 509 chain 23938 chr6 171115067 + 120832119 120832416 L1P1 4361 + 2892 3189 110698 297 chain 268051 chr6 171115067 + 120840522 120843477 L1PA3long 6157 - 0 2956 15290 5 2 0 1659 0 2 737 0 1 552 chain 128709 chr6 171115067 + 120843483 120845094 L1P1 4361 + 2 1617 28385 294 15 18 260 1 0 73 7 1 54 15 8 575 0 9 201 0 6 116 chain 7776 chr6 171115067 + 120847439 120847535 U6 107 - 0 96 172438 96 chain 22619 chr6 171115067 + 120896425 120896695 AluY 311 + 26 298 117490 19 0 1 86 0 1 165 chain 149943 chr6 171115067 + 120901361 120903290 L1PA8A 6298 - 9 1928 24615 261 0 1 19 0 1 322 1 0 104 2 1 56 10 1 32 13 2 75 0 1 264 1 2 100 0 3 63 0 2 148 7 6 29 0 2 329 0 2 93 chain 548271 chr6 171115067 + 120958641 120964793 L1PA3long 6157 - 0 6157 1667 55 0 4 1763 0 1 1162 0 1 67 7 2 717 0 2 1121 0 1 553 0 1 707 chain 8390 chr6 171115067 + 120972351 120972476 L1PA16 3655 + 3469 3590 168907 27 2 1 80 3 0 13 chain 51268 chr6 171115067 + 121000000 121000573 L1PA3long 6157 + 5584 6157 58145 163 1 0 261 0 1 148 chain 6471 chr6 171115067 + 121007766 121007858 5S 121 + 0 90 181465 24 10 8 58 chain 551420 chr6 171115067 + 121009885 121015914 L1PA2 6032 + 0 6032 1263 495 1 0 643 4 0 4140 0 8 746 chain 11759 chr6 171115067 + 121032579 121032826 L1M1 2793 + 2412 2661 153222 22 1 0 111 80 83 33 chain 4334 chr6 171115067 + 121041964 121042020 Tigger6a 1079 - 189 252 202793 25 0 7 31 chain 171671 chr6 171115067 + 121045183 121047479 L1P1 4361 - 1383 3361 21860 615 0 1 532 320 0 34 2 4 554 1 0 238 chain 280829 chr6 171115067 + 121047479 121050608 L1PA4 6152 + 3010 6141 14593 419 0 2 1440 1 0 429 0 1 840 chain 550209 chr6 171115067 + 121069517 121075631 L1PA3long 6157 + 19 6149 1418 322 1 0 538 0 2 308 0 3 997 0 1 335 0 6 20 0 1 2418 0 3 789 0 1 386 chain 13910 chr6 171115067 + 121093763 121093923 L1P1 4361 + 4169 4328 144883 136 1 0 23 chain 162422 chr6 171115067 + 121112503 121114519 L1PA7 6471 - 14 2020 23012 5 0 1 747 0 2 28 0 3 50 2 1 376 22 0 331 1 2 332 0 1 7 1 0 27 0 6 87 chain 46292 chr6 171115067 + 121119168 121119875 L1P3 4156 - 17 701 61777 24 2 1 7 2 0 36 1 0 45 0 1 18 25 23 41 5 23 94 46 10 361 chain 19051 chr6 171115067 + 121119875 121120110 L1PA8A 6298 + 6054 6290 129969 117 0 1 118 chain 29432 chr6 171115067 + 121120991 121121308 AluYb8 318 - 1 318 86933 317 chain 54343 chr6 171115067 + 121127036 121127999 LTR12_ 688 - 0 688 56137 95 299 0 389 0 24 180 chain 283426 chr6 171115067 + 121134061 121137792 L1P3 4156 - 17 4153 14440 24 11 8 105 1 4 162 0 399 205 0 4 585 13 14 463 5 6 208 2 1 599 7 6 7 0 1 106 0 4 159 27 21 438 27 28 205 10 12 36 13 12 56 13 12 77 19 20 5 0 1 5 1 0 48 0 1 89 chain 527121 chr6 171115067 + 121139074 121145009 L1PA3long 6157 + 0 6157 4487 1093 0 3 32 0 202 235 0 2 540 0 3 204 0 1 253 4 8 170 0 1 335 0 4 283 0 1 2782 0 1 4 chain 25215 chr6 171115067 + 121145025 121145316 L1PA4 6152 + 5155 5443 103659 146 3 0 142 chain 61695 chr6 171115067 + 121145316 121146027 L1PA4 6152 + 5444 6152 52039 702 3 0 6 chain 43088 chr6 171115067 + 121162255 121162795 MLT2A2 560 + 0 560 65307 203 0 1 121 0 18 26 1 2 189 chain 124634 chr6 171115067 + 121167462 121171496 L1PA3long 6157 - 0 3644 29499 188 0 1 101 0 151 493 2519 1976 54 5 4 109 0 1 169 0 1 396 chain 49525 chr6 171115067 + 121168244 121168812 L1P1 4361 + 3776 4341 59310 375 1 0 154 1 0 23 2 1 12 chain 73062 chr6 171115067 + 121171496 121172377 L1PA5 6144 + 5252 6143 46951 48 8 14 609 1 0 5 9 15 55 1 0 145 chain 216093 chr6 171115067 + 121210685 121213824 L1PA11 4918 - 293 3394 18108 14 19 13 4 1 0 11 12 5 10 3 1 13 1 0 15 13 9 10 40 34 11 13 11 36 0 1 20 2 0 11 2 1 50 20 14 270 0 1 256 5 9 68 7 8 56 4 0 231 7 8 188 0 4 306 0 3 6 0 1 69 6 7 300 38 3 59 3 8 128 12 17 27 0 6 5 0 1 22 0 4 16 0 4 43 0 2 203 12 6 172 0 1 109 0 1 6 1 0 173 chain 28547 chr6 171115067 + 121216611 121217007 L1PB3 3668 + 3080 3475 90979 201 17 16 56 0 1 37 1 0 84 chain 268714 chr6 171115067 + 121246382 121250355 HERVH-int 3825 + 0 3825 15249 333 1 0 197 1 0 11 1 0 4 0 1 9 0 3 12 2 1 9 1 0 12 4 0 5 6 0 6 3 1 14 1 0 13 3 0 14 0 39 13 45 0 19 21 0 63 1 0 291 13 14 134 24 9 204 389 40 214 4 31 290 1 15 98 1 0 15 0 3 265 42 43 594 0 1 30 9 11 39 37 247 151 0 1 79 0 2 225 chain 29420 chr6 171115067 + 121251613 121251994 LTR7 482 + 0 473 86984 69 8 46 109 0 1 11 0 53 184 chain 81012 chr6 171115067 + 121252583 121253559 LTR5_Hs 974 + 0 974 43189 9 0 3 81 1 0 108 0 1 59 18 0 277 6 8 278 0 6 40 1 0 18 0 6 80 chain 27545 chr6 171115067 + 121258439 121258765 L1PA5 6144 + 5806 6132 94519 183 11 11 132 chain 19059 chr6 171115067 + 121263725 121263925 AluYa5 310 - 10 210 129945 200 chain 17814 chr6 171115067 + 121285692 121285903 L1PA6 6164 + 5949 6160 133357 211 chain 46986 chr6 171115067 + 121304701 121305229 L1PA4 6152 + 5624 6152 61222 528 chain 20270 chr6 171115067 + 121307955 121308263 THE1B 368 - 59 368 126313 8 2 0 61 2 1 7 1 0 18 22 29 16 1 0 57 8 7 105 chain 23095 chr6 171115067 + 121318193 121318478 AluSc 308 + 12 298 115162 155 0 1 130 chain 89393 chr6 171115067 + 121332621 121333630 L1PA5 6144 + 5134 6142 39843 249 1 0 759 chain 13984 chr6 171115067 + 121335868 121336041 THE1D 372 - 0 174 144636 32 1 0 82 0 2 58 chain 32199 chr6 171115067 + 121345772 121346160 L1PA5 6144 + 5747 6141 80523 12 9 15 367 chain 44340 chr6 171115067 + 121346731 121347276 L1PA5 6144 + 5631 6139 63772 260 1 0 207 36 0 41 chain 14923 chr6 171115067 + 121359040 121359203 L1PA4 6152 + 5980 6143 141567 163 chain 5035 chr6 171115067 + 121359956 121360233 L1ME2z 1083 + 692 919 194783 40 69 55 22 123 87 23 chain 53999 chr6 171115067 + 121360584 121361418 LTR12 884 - 0 884 56365 105 0 2 147 96 0 160 16 15 10 3 1 68 2 0 37 0 2 18 1 42 96 0 107 49 1 0 25 chain 69911 chr6 171115067 + 121363230 121364095 MER11D 897 + 0 897 48431 271 17 18 49 0 8 252 0 23 276 chain 40476 chr6 171115067 + 121369159 121369619 HERVK11D-int 613 + 153 613 68627 135 1 0 223 0 1 101 chain 76371 chr6 171115067 + 121369619 121370493 MER11D 897 + 0 897 45279 584 3 26 287 chain 23890 chr6 171115067 + 121382723 121383286 L1PB1 5432 + 4908 5421 110959 23 19 37 46 0 6 72 65 21 21 1 0 10 1 0 14 15 9 53 2 1 15 1 0 45 1 0 4 0 1 10 31 19 11 29 24 20 1 0 21 1 0 13 1 0 17 chain 74178 chr6 171115067 + 121416538 121417423 L1PA7 6471 - 1960 2846 46378 274 0 1 4 1 0 20 0 2 340 1 0 245 chain 163494 chr6 171115067 + 121417423 121419337 L1PA7 6471 + 4540 6455 22877 1074 0 4 460 3 0 53 0 1 148 1 0 175 chain 43407 chr6 171115067 + 121421164 121421655 L1PA5 6144 - 3253 3744 64926 491 chain 281980 chr6 171115067 + 121421655 121424873 L1PA5 6144 + 2903 6127 14536 2411 0 6 661 4 11 5 7 0 130 chain 471592 chr6 171115067 + 121469142 121475539 L1PA7 6471 - 10 6414 7981 586 1 4 22 274 0 140 3 0 9 0 2 74 1 3 48 7 5 19 0 1 4 2 1 291 3 4 292 2 1 6 0 1 225 4 248 75 0 1 156 3 6 26 2 4 9 1 4 100 4 5 79 1 3 112 1 0 405 1 0 5 0 1 173 0 1 43 1 3 629 1 2 361 1 2 91 0 1 15 0 1 120 0 1 140 2 0 322 0 1 109 0 3 28 2 0 67 18 18 79 0 3 5 1 4 48 1 5 206 13 14 343 0 1 10 6 7 201 22 15 66 0 8 140 34 35 106 chain 34219 chr6 171115067 + 121482845 121483477 L1PA11 4918 - 289 873 77323 18 9 5 11 27 17 10 3 1 13 1 0 4 0 3 8 13 9 10 8 3 9 4 0 20 1 0 16 2 0 65 2 0 12 1 0 60 9 4 48 10 0 29 4 5 4 1 0 200 chain 564052 chr6 171115067 + 121483862 121489871 L1HS 6032 + 7 6032 237 730 0 16 5279 chain 10158 chr6 171115067 + 121493293 121493420 THE1B 368 + 243 368 159814 36 1 0 29 1 0 60 chain 54213 chr6 171115067 + 121493424 121494093 HERVL-int 5654 + 4941 5617 56217 38 0 4 235 1 0 232 6 7 41 0 3 116 chain 21747 chr6 171115067 + 121502361 121502716 MSTA 426 + 0 399 121216 66 3 4 26 33 60 50 2 0 30 2 0 55 10 30 78 chain 31601 chr6 171115067 + 121512838 121513269 MLT2A1 477 + 8 477 81486 52 0 1 81 0 1 26 6 10 141 10 9 20 0 1 35 3 35 57 chain 449378 chr6 171115067 + 121513270 121518912 HERVL-int 5654 + 1 5654 8782 45 0 3 195 0 2 132 0 6 27 4 0 6 1 5 56 0 3 319 6 7 59 0 5 256 0 1 149 0 2 71 0 2 368 0 2 160 26 13 167 0 1 36 0 1 493 0 1 48 0 3 607 0 2 98 0 3 56 0 1 292 2 1 420 17 0 396 0 1 60 4 0 82 0 1 577 1 5 183 0 1 223 chain 30837 chr6 171115067 + 121518912 121519317 MLT2A1 477 + 0 400 82793 142 0 1 25 0 4 152 1 0 61 8 0 7 1 0 8 chain 108634 chr6 171115067 + 121533192 121535302 L1PREC2 3366 + 1393 3051 34530 292 31 23 63 0 4 4 324 0 22 0 1 87 0 1 4 2 1 127 0 1 94 6 6 356 111 14 119 0 4 101 1 0 35 2 0 54 1 0 5 120 111 29 36 20 37 8 4 39 chain 35470 chr6 171115067 + 121537589 121538008 HERVL-int 5654 + 0 456 75595 79 0 37 340 chain 27640 chr6 171115067 + 121538008 121538360 HERVL-int 5654 + 2159 2511 93435 352 chain 14239 chr6 171115067 + 121538360 121538522 HERVL-int 5654 + 2518 2680 143764 162 chain 22518 chr6 171115067 + 121539552 121539880 MLT2A1 477 + 0 477 117953 164 9 6 73 36 188 46 chain 12889 chr6 171115067 + 121548097 121548309 MER30 238 - 1 205 148676 38 3 0 41 0 6 33 4 11 67 18 0 8 chain 102458 chr6 171115067 + 121552407 121553879 L1PB1 5432 - 292 1760 36143 26 52 55 324 0 4 95 13 10 240 5 0 81 3 1 82 7 9 45 0 4 27 1 0 8 1 0 311 4 6 80 13 6 54 chain 47364 chr6 171115067 + 121568447 121570301 L1PB2 3958 + 66 1917 21855 18 5 0 14 14 10 18 4 5 7 2 0 18 0 1 18 9 5 50 3 0 58 0 4 46 0 3 112 14 7 26 7 11 488 0 3 314 0 4 7 0 1 26 4 9 203 24 23 16 1 0 55 6 7 33 0 4 57 3 4 62 2 0 22 49 26 16 6 23 17 chain 203110 chr6 171115067 + 121571287 121573874 L1PA8 5853 + 3247 5846 18983 48 0 1 612 0 4 144 0 4 220 0 3 50 2 1 128 0 22 149 0 1 371 1 4 55 0 8 10 30 0 372 3 1 34 14 19 7 0 1 46 1 0 46 2 0 71 1 0 9 1 0 43 19 18 11 1 0 86 chain 32240 chr6 171115067 + 121573907 121575169 L1PB2 3958 + 2875 3838 21855 49 1 0 24 6 3 25 9 11 40 7 8 55 0 1 173 0 3 11 0 2 8 2 4 17 2 0 9 3 0 32 12 11 13 9 0 52 28 25 49 342 54 25 0 6 32 1 0 62 1 0 30 1 0 44 2 0 22 1 0 63 chain 309628 chr6 171115067 + 121583922 121588222 L1PA8 5853 + 1533 5853 13018 70 0 7 130 10 8 231 30 20 20 1 0 190 0 1 67 12 6 227 0 9 296 0 3 43 10 11 10 2 0 25 0 1 4 1 0 5 0 9 6 2 1 97 2 4 99 0 11 165 1 3 5 2 0 274 1 3 433 27 31 282 2 0 6 8 5 19 11 0 70 0 1 97 0 2 198 4 5 198 0 1 11 4 5 51 2 0 16 11 18 224 5 8 197 0 1 91 1 0 44 2 0 71 1 0 11 7 6 44 2 1 14 5 6 86 1 0 6 chain 511204 chr6 171115067 + 121588298 121594413 L1PA5 6144 + 0 6142 6048 121 5 19 171 0 1 161 18 22 146 28 35 87 1 2 4 1 0 151 0 1 126 0 1 121 9 0 262 4 5 267 1 0 533 8 9 919 1 0 6 2 0 72 0 5 668 5 4 770 0 7 598 1 0 848 chain 30976 chr6 171115067 + 121594413 121594781 L1PA5 6144 + 5761 6132 82555 234 4 7 130 chain 494190 chr6 171115067 + 121606674 121612297 L1PA4 6152 + 1 6143 7162 95 0 525 863 15 1 1229 0 1 1400 1 0 239 0 4 131 0 3 1400 1 0 84 1 3 164 chain 22240 chr6 171115067 + 121621307 121621600 AluSx4 309 + 0 288 119169 81 13 7 21 0 1 178 chain 104051 chr6 171115067 + 121621608 121622839 L1PA7 6471 + 5175 6466 35722 71 0 58 317 2 1 447 0 3 394 chain 12569 chr6 171115067 + 121632889 121633041 L1PA8 5853 + 5182 5334 149969 152 chain 14834 chr6 171115067 + 121633041 121633225 L1PA8 5853 + 5385 5571 141827 179 0 2 5 chain 7556 chr6 171115067 + 121633235 121633326 L1PA8 5853 + 5589 5678 173829 20 2 0 69 chain 12087 chr6 171115067 + 121633346 121633503 L1PA8 5853 + 5696 5851 151845 44 2 1 19 1 0 91 chain 449267 chr6 171115067 + 121689950 121695871 L1PA7 6471 + 879 6469 8784 189 2 0 385 13 15 256 0 1 234 0 1 410 0 4 127 18 8 10 0 2 61 2 0 24 6 15 20 19 6 126 4 2 455 5 6 115 0 1 119 8 6 44 1 0 7 0 1 75 1 0 8 1 0 224 2 0 1119 1 0 24 1 0 309 12 3 330 1 0 133 0 3 50 298 0 110 9 0 396 24 23 133 chain 6876 chr6 171115067 + 121699944 121700032 HY3 101 - 1 89 178384 88 chain 40192 chr6 171115067 + 121725898 121726361 LTR2 463 - 0 463 69039 463 chain 19279 chr6 171115067 + 121745926 121746306 THE1D 372 - 0 372 129291 148 1 0 7 54 56 67 26 28 21 26 15 30 chain 4030 chr6 171115067 + 121764762 121764805 U3 216 + 0 43 206922 43 chain 18121 chr6 171115067 + 121771433 121771673 AluSp 311 + 24 293 132534 157 0 32 68 4 1 11 chain 18485 chr6 171115067 + 121804811 121805055 L1PA7 6471 - 2 249 131545 144 3 4 6 0 3 71 1 0 19 chain 25211 chr6 171115067 + 121811523 121811811 AluSp 311 + 9 296 103682 168 1 0 119 chain 57797 chr6 171115067 + 121814805 121815608 MER4E1 777 + 0 769 54084 25 2 0 240 1 2 101 0 7 72 31 1 55 8 0 22 26 29 11 4 0 27 1 0 177 chain 15915 chr6 171115067 + 121834015 121834323 THE1C 375 + 8 375 138614 100 1 50 24 1 2 13 55 65 85 11 10 18 chain 10901 chr6 171115067 + 121863628 121863763 U4 144 - 0 135 156582 135 chain 51825 chr6 171115067 + 121882600 121883204 L1PA6 6164 - 3 607 57736 604 chain 479241 chr6 171115067 + 121887188 121892476 L1PA3long 6157 - 0 5304 7754 10 0 1 136 0 1 1078 0 1 1809 0 10 680 0 1 222 0 2 1353 chain 16644 chr6 171115067 + 121917400 121917720 MER61A 341 + 12 341 136546 6 1 0 138 84 94 30 1 0 4 1 2 55 chain 13610 chr6 171115067 + 121927469 121927640 L1PA16 3655 - 66 234 145936 11 3 0 157 chain 4030 chr6 171115067 + 121939948 121939994 MER5A 189 + 26 72 206929 46 chain 38294 chr6 171115067 + 121941567 121942015 LTR7 482 - 0 482 71715 93 0 2 109 5 36 21 0 1 220 chain 296549 chr6 171115067 + 121943275 121946996 HERVH-int 3825 - 0 3825 13614 454 8 14 6 6 0 13 8 218 96 1 2 567 0 1 4 1 0 734 4 31 348 1 2 554 0 3 48 2 1 9 21 0 23 1 0 41 0 37 15 28 0 24 1 0 10 129 0 38 5 0 310 0 11 211 chain 6415 chr6 171115067 + 121946304 121946382 HERVH-int 3825 - 3255 3389 181910 25 0 56 53 chain 37322 chr6 171115067 + 121946998 121947446 LTR7 482 - 0 482 73058 79 10 14 13 1 0 81 0 31 264 chain 14489 chr6 171115067 + 121953056 121953226 MER41-int 2638 + 1364 1534 142920 170 chain 6794 chr6 171115067 + 121953319 121953395 MER4A1 472 - 396 472 178999 76 chain 157449 chr6 171115067 + 121953409 121955577 MER4-int 2692 - 7 2174 23669 11 0 1 116 0 1 73 0 4 207 1 0 2 6 0 35 2 3 231 5 4 132 0 1 356 6 1 87 137 137 87 7 10 260 6 7 113 0 1 88 0 1 98 2 0 100 chain 113848 chr6 171115067 + 121955589 121957027 HERVL-int 5654 + 4212 5654 33136 835 4 5 144 0 2 27 3 4 53 2 1 145 5 6 220 chain 21763 chr6 171115067 + 121957027 121957337 MLT2A1 477 + 0 318 121165 44 4 6 39 0 1 49 3 4 19 8 12 144 chain 118081 chr6 171115067 + 121964402 121965806 L1PA7 6471 + 5065 6470 31780 292 1 0 10 0 2 199 1 4 49 1 0 485 2 0 235 0 2 5 3 1 121 chain 106514 chr6 171115067 + 122006434 122008121 LTR12C 1709 - 0 1709 35115 84 1 0 108 304 5 284 0 4 106 4 2 4 1 0 104 0 278 261 4 5 83 0 43 36 9 0 10 1 3 8 0 4 10 1 2 90 6 7 168 chain 6224 chr6 171115067 + 122017947 122018082 L1MA8 2339 - 76 205 183371 7 1 0 23 2 0 22 1 3 10 10 4 27 2 3 30 chain 513266 chr6 171115067 + 122024088 122030233 L1PA6 6164 + 0 6162 5857 396 0 3 61 6 5 15 6 7 300 0 17 642 2 0 106 1 0 269 1 3 140 0 8 362 21 7 1180 1 2 1053 0 1 524 8 6 41 0 1 45 2 1 101 0 4 12 0 4 510 0 1 320 1 0 6 4 0 9 chain 19837 chr6 171115067 + 122034428 122034866 L1PB1 5432 - 10 428 127690 18 1 0 13 1 0 5 1 4 12 1 0 24 61 46 4 1 0 14 1 0 9 0 9 27 1 0 16 2 1 52 18 12 12 3 2 4 1 0 24 7 0 6 0 5 99 chain 21758 chr6 171115067 + 122041961 122042304 THE1B 368 + 8 368 121177 14 0 1 146 1 0 29 1 0 4 35 56 38 4 0 43 3 4 25 chain 112663 chr6 171115067 + 122050227 122051551 SVA_B 1603 - 6 1593 33484 581 0 82 42 0 40 224 0 116 159 0 1 288 1 25 29 chain 40080 chr6 171115067 + 122051630 122052187 LTR10A 586 - 34 586 69213 41 34 31 197 3 4 54 4 0 13 9 10 202 chain 122011 chr6 171115067 + 122057763 122059632 L1PA10 4194 - 2191 4019 30381 467 1 0 337 0 14 502 11 6 171 195 171 16 41 33 14 3 1 15 17 15 9 2 0 9 11 7 10 2 0 7 3 0 12 2 0 12 chain 37657 chr6 171115067 + 122072550 122073036 L1PA11 4918 - 414 904 72606 16 1 0 15 2 0 66 2 0 12 1 0 14 0 1 6 0 1 31 0 1 10 1 0 17 0 4 130 0 4 162 chain 195290 chr6 171115067 + 122081347 122083812 L1P3 4156 + 0 2466 19558 251 1 0 68 2 1 81 3 0 45 0 1 24 0 1 17 1 8 86 9 10 153 0 1 77 3 1 330 1 3 587 7 5 203 1 2 39 0 1 162 0 1 78 2 1 25 1 0 192 4 0 12 chain 22524 chr6 171115067 + 122083827 122084122 L1PA7 6471 + 6183 6461 117917 24 18 1 253 chain 3764 chr6 171115067 + 122118383 122118427 LTR8A 794 + 0 44 210897 44 chain 48145 chr6 171115067 + 122118436 122119400 MER11C 1089 + 0 1061 60364 89 0 91 79 0 3 105 0 1 58 9 8 79 287 285 5 0 2 25 5 6 41 0 1 16 4 5 162 chain 20571 chr6 171115067 + 122139990 122140327 THE1A 353 + 0 353 125391 13 2 0 35 16 17 17 13 12 115 19 34 80 0 3 27 chain 27582 chr6 171115067 + 122152869 122153229 THE1C 375 - 15 375 94400 11 6 5 162 0 1 181 chain 5173 chr6 171115067 + 122163875 122164071 MER33 330 - 4 197 193317 23 13 28 6 7 0 14 2 0 4 13 0 9 26 41 43 2 0 8 3 0 4 6 0 13 chain 301457 chr6 171115067 + 122182193 122186403 L1P2 5180 - 38 3948 13347 6 1 0 47 1 0 58 1 0 4 0 1 5 0 1 10 11 0 21 1 0 187 2 0 7 1 4 84 0 2 382 1 0 35 1 0 201 0 5 19 0 4 334 0 1 218 0 1 109 2 1 605 0 4 341 0 4 107 7 8 189 2 0 5 0 2 272 313 3 372 20 24 13 1 0 214 chain 18939 chr6 171115067 + 122194339 122194695 THE1B 368 - 0 368 130257 39 21 22 19 0 2 54 1 0 18 0 4 10 24 27 4 1 0 108 24 30 16 2 0 15 chain 68328 chr6 171115067 + 122229823 122230625 L1PA5 6144 - 4 810 49112 6 3 0 158 0 1 532 6 9 45 0 3 52 chain 5875 chr6 171115067 + 122230637 122230707 L1MA6 2487 - 2161 2231 186423 70 chain 210771 chr6 171115067 + 122256041 122258961 L1PA7 6471 - 7 2597 18451 121 1 0 48 5 0 235 0 1 14 0 2 341 0 2 79 1 0 193 1 0 4 0 1 366 36 18 222 0 4 162 317 0 126 1 3 497 0 1 17 1 2 5 1 0 12 1 0 45 7 8 61 chain 10266 chr6 171115067 + 122274601 122274734 THE1A 353 - 0 132 159302 35 1 0 97 chain 124582 chr6 171115067 + 122275282 122277161 THE1A-int 1579 - 0 1579 29512 421 4 5 225 0 1 237 2 0 285 300 0 405 chain 24434 chr6 171115067 + 122283292 122283558 AluYg6 310 + 36 302 107893 266 chain 377579 chr6 171115067 + 122300070 122305541 L1PA8 5853 - 0 5187 10830 66 0 3 23 4 3 14 1 0 54 17 15 51 0 2 13 2 0 45 1 0 193 1 2 143 1 0 4 0 1 133 1 4 71 0 5 92 9 8 85 0 6 133 0 1 320 0 1 28 1 0 68 319 0 526 0 1 141 0 2 10 1 0 7 1 7 27 3 4 141 1 2 65 7 9 63 10 0 166 10 8 167 0 1 5 2 0 56 0 2 240 1 2 485 0 16 95 2 1 145 1 0 286 0 1 31 1 0 25 11 13 280 5 6 91 1 0 296 47 52 26 41 40 59 chain 28878 chr6 171115067 + 122301654 122301963 AluYa5 310 - 2 310 89553 190 1 0 118 chain 227608 chr6 171115067 + 122317109 122319701 L1PA5 6144 - 0 2599 17444 15 0 3 1804 0 1 315 0 1 239 0 1 45 0 1 174 chain 3973 chr6 171115067 + 122344775 122345138 MLT2D 439 + 0 353 207792 29 106 0 8 7 134 15 164 133 34 chain 29854 chr6 171115067 + 122356981 122357335 THE1A 353 + 0 353 85262 111 1 0 242 chain 11512 chr6 171115067 + 122395143 122395272 L1PA5 6144 + 6011 6140 154243 129 chain 51517 chr6 171115067 + 122420902 122421613 LTR12D 1347 + 405 1347 57954 129 3 34 17 10 9 120 3 4 16 2 1 129 0 1 56 0 200 226 chain 29921 chr6 171115067 + 122436758 122437069 AluYb8 318 + 0 311 85033 311 chain 28752 chr6 171115067 + 122484564 122484868 AluYb8 318 + 6 310 90110 304 chain 108682 chr6 171115067 + 122485334 122486766 LTR12C 1709 - 0 1709 34519 27 3 0 57 13 12 52 1 102 18 0 1 212 11 4 106 3 1 5 1 0 245 0 118 167 1 6 6 5 0 56 4 5 40 4 5 66 0 1 16 0 43 51 6 31 256 chain 4690 chr6 171115067 + 122523634 122523685 Tigger3b 1229 + 50 101 198645 51 chain 28419 chr6 171115067 + 122525686 122525994 AluYb8 318 + 0 305 91503 126 3 0 179 chain 12760 chr6 171115067 + 122532793 122532940 U1 164 + 0 147 149208 147 chain 345301 chr6 171115067 + 122548472 122552371 L1PA5 6144 - 0 3895 11749 136 0 1 1017 9 0 156 0 1 511 0 1 1564 0 1 435 1 2 70 chain 21289 chr6 171115067 + 122565541 122565774 AluYc 301 + 47 282 122903 73 0 2 160 chain 23038 chr6 171115067 + 122591578 122591838 L1PA6 6164 - 297 557 115460 260 chain 12716 chr6 171115067 + 122591838 122591994 L1PA6 6164 + 6001 6159 149396 9 0 1 68 0 1 79 chain 120075 chr6 171115067 + 122601546 122603005 LTR12C 1709 + 0 1709 31035 38 0 1 425 8 9 154 4 0 92 0 118 23 0 2 250 1 0 4 4 2 106 0 4 248 1 0 38 1 132 38 1 2 23 chain 78007 chr6 171115067 + 122645878 122646768 L1PA4 6152 - 1 891 44507 302 1 2 263 2 1 322 chain 112758 chr6 171115067 + 122646768 122648011 L1PA4 6152 + 4015 5261 33457 681 1 4 561 chain 21614 chr6 171115067 + 122678550 122678822 L1PA7 6471 + 6199 6469 121712 260 2 0 10 chain 3167 chr6 171115067 + 122681669 122681705 MER5B 177 - 126 162 221605 36 chain 363034 chr6 171115067 + 122698377 122702462 L1PA4 6152 - 0 4098 11291 11 0 6 1294 9 10 106 0 1 1559 0 5 1106 chain 12425 chr6 171115067 + 122723089 122723302 MER30 238 + 1 237 150549 15 26 33 58 10 26 104 chain 46963 chr6 171115067 + 122750978 122751530 L1P3 4156 - 17 568 61238 24 2 1 7 2 0 219 0 1 50 0 1 248 chain 3098 chr6 171115067 + 122759472 122759506 MSTA-int 1630 + 0 34 222961 34 chain 37493 chr6 171115067 + 122775748 122776300 HERVL-int 5654 + 1914 5654 72819 121 0 3165 83 0 3 217 1 0 24 23 44 83 chain 33710 chr6 171115067 + 122776352 122776799 MLT2A1 477 + 0 477 78079 169 4 1 24 3 0 191 4 0 8 5 41 33 0 4 6 chain 22570 chr6 171115067 + 122782568 122782815 L1PA2 6032 + 5784 6031 117720 247 chain 28065 chr6 171115067 + 122799942 122800344 L1P3 4156 - 3747 4151 92769 88 2 1 58 16 15 94 14 15 105 0 3 25 chain 10195 chr6 171115067 + 122819257 122819614 THE1B 368 - 0 368 159651 66 6 8 44 198 207 43 chain 12341 chr6 171115067 + 122823277 122823471 MSTA-int 1630 - 1435 1630 150859 28 9 8 44 0 3 90 11 10 12 chain 44324 chr6 171115067 + 122825998 122826540 LTR14 556 - 9 556 63798 278 7 12 257 chain 43144 chr6 171115067 + 122832700 122833238 LTR14 556 - 19 556 65238 364 4 3 170 chain 28637 chr6 171115067 + 122840210 122840672 MER1A 529 + 30 529 90568 54 3 0 8 11 51 31 3 5 15 8 11 29 10 11 212 20 14 58 chain 6315 chr6 171115067 + 122844950 122845070 THE1B 368 + 181 306 182675 17 0 3 9 0 4 14 29 27 51 chain 541780 chr6 171115067 + 122858314 122864497 L1PA4 6152 - 1 6152 2548 147 0 1 99 15 1 114 0 2 149 0 1 1170 2 0 733 0 1 379 1 2 753 1 0 14 0 1 271 1 0 1479 34 0 258 1 0 434 5 19 123 chain 5095 chr6 171115067 + 122868355 122868472 LTR18B 584 - 21 116 194137 38 45 23 34 chain 22468 chr6 171115067 + 122877134 122877509 THE1C 375 + 0 375 118162 13 2 0 34 10 7 14 47 49 86 0 3 144 1 0 15 0 1 9 chain 17167 chr6 171115067 + 122879926 122880266 L1PB1 5432 - 19 327 135116 9 1 0 13 1 0 21 1 0 24 2 0 11 11 8 18 25 13 16 1 0 43 1 0 16 2 1 51 2 0 11 16 11 9 1 0 24 1 0 9 chain 133346 chr6 171115067 + 122894705 122896698 L1PB2 3958 + 1854 3838 27359 4 1 0 110 4 9 53 0 1 18 1 0 308 1 5 120 3 0 6 13 6 33 4 20 86 17 18 34 1 0 66 1 3 170 1 0 38 5 17 151 3 4 140 0 1 32 2 0 56 1 0 7 21 15 53 2 0 13 4 0 83 9 6 78 1 0 58 32 17 48 4 3 10 2 0 20 2 1 63 chain 26121 chr6 171115067 + 122899866 122900211 THE1C 375 + 0 344 99522 123 3 0 71 4 5 79 0 1 65 chain 118937 chr6 171115067 + 122908181 122909514 L1PA4 6152 - 9 1361 31441 835 0 4 416 0 15 82 chain 21274 chr6 171115067 + 122909514 122909745 L1PA4 6152 + 4581 4812 121605 231 chain 11553 chr6 171115067 + 122914975 122915115 MLT2A1 477 - 337 477 154092 20 0 1 5 1 0 114 chain 464949 chr6 171115067 + 122915115 122921076 HERVL-int 5654 - 0 5654 8224 236 298 0 59 4 7 248 6 8 73 0 2 302 1 0 497 0 1 814 16 0 123 9 1 1079 8 5 47 0 16 416 0 1 411 5 1 178 7 5 31 5 0 204 12 13 458 0 2 172 14 16 228 chain 30236 chr6 171115067 + 122921197 122921577 MLT2A1 477 - 92 477 84098 211 1 5 18 8 9 142 chain 25580 chr6 171115067 + 122949184 122949481 AluSp 311 - 12 311 101824 34 0 3 85 1 0 177 chain 22410 chr6 171115067 + 122955243 122955507 L1PA7 6471 + 6199 6464 118441 5 0 1 41 1 0 4 0 1 213 chain 4087 chr6 171115067 + 122957173 122957223 MIR 256 - 46 96 206107 50 chain 8312 chr6 171115067 + 123004983 123005241 L1MB1 2102 + 1722 2006 169319 16 1 0 9 1 0 7 1 0 68 125 154 30 chain 8728 chr6 171115067 + 123020313 123020408 L1PA2 6032 + 5937 6032 167039 95 chain 12528 chr6 171115067 + 123052899 123053061 L1PA8 5853 + 5693 5853 150124 51 1 0 16 1 0 93 chain 33728 chr6 171115067 + 123062659 123063116 LTR2 463 - 0 463 78046 22 1 0 66 12 13 112 3 0 77 5 11 104 0 3 55 chain 424346 chr6 171115067 + 123063125 123069186 HERVE_a-int 7009 - 3 6869 9438 7 1 0 8 2 0 25 32 24 15 9 7 28 2 0 25 1 0 13 3 1 6 1 0 30 1 0 27 3 1 54 3 0 26 4 0 11 2 1 51 9 7 28 1 0 3 1 0 43 6 5 21 1 0 36 1 0 7 2 0 5 1 0 16 1 0 10 1 0 26 0 1 4 1 0 45 1 0 136 2 0 42 0 1 36 2 1 14 7 6 12 3 1 56 1 0 3 1 0 15 1 0 102 2 0 257 2 1 12 1 0 87 1 0 28 1 0 36 1 0 7 1 0 75 1 0 9 1 0 7 5 6 12 1 0 96 0 5 13 9 0 86 0 1 142 0 1 206 2 1 1165 169 1168 140 1 0 38 1 0 14 2 1 139 2 1 11 7 5 17 16 11 26 6 4 25 3 2 93 1 0 7 6 5 23 2 1 17 1 0 26 1 0 41 2 1 36 1 0 4 2 1 35 2 1 62 1 0 38 1 0 41 2 1 19 1 0 4 2 1 10 21 19 10 1 0 20 1 0 19 1 0 115 1 0 12 5 4 23 1 0 57 3 1 56 35 29 26 1 0 2 1 0 13 1 0 9 1 0 17 4 0 10 10 8 15 1 0 21 1 0 52 1 0 14 2 0 11 1 0 28 1 0 33 2 1 73 1 0 8 1 0 26 1 0 67 1 0 27 2 0 55 1 0 10 1 0 33 2 1 15 1 0 12 1 0 23 5 6 69 1 0 35 1 0 53 1 0 21 1 0 44 1 0 25 4 2 34 28 0 19 47 36 13 1 0 9 1 0 7 1 0 26 5 3 6 2 0 73 3 1 29 3 0 16 chain 14627 chr6 171115067 + 123066484 123066653 7SLRNA 320 + 82 251 142499 169 chain 37601 chr6 171115067 + 123069949 123070407 LTR2 463 - 0 463 72683 88 14 15 58 0 1 243 0 3 55 chain 31105 chr6 171115067 + 123074745 123075263 MER51A 677 - 16 677 82332 44 14 17 16 8 0 98 24 11 51 0 163 68 41 30 22 0 9 132 chain 230233 chr6 171115067 + 123083024 123085691 L1PA5 6144 + 3470 6142 17295 1017 1 5 136 1 0 666 1 0 371 0 3 474 chain 17558 chr6 171115067 + 123112459 123112674 MER57A1 433 + 0 216 134106 142 0 1 73 chain 4519 chr6 171115067 + 123118832 123118884 MER58A 224 + 29 81 200570 52 chain 2562 chr6 171115067 + 123142600 123142652 LTR82A 830 - 577 627 232352 4 1 0 21 9 8 17 chain 15502 chr6 171115067 + 123156056 123156279 MER30 238 - 0 238 139888 40 3 0 68 11 29 101 chain 29596 chr6 171115067 + 123160132 123160517 MLT2A1 477 + 0 385 86219 169 4 1 11 0 1 22 0 3 14 1 0 164 chain 289275 chr6 171115067 + 123161361 123165007 HERVH-int 3825 + 5 3825 14066 159 0 2 46 0 11 157 0 2 147 68 2 39 1 0 10 1 0 9 4 0 14 10 4 12 1 0 11 46 1 71 9 28 49 1 0 7 0 23 75 0 4 335 15 0 67 0 1 33 0 2 272 0 4 83 4 31 631 0 5 103 1 0 665 8 218 72 39 39 143 3 8 225 chain 40843 chr6 171115067 + 123166262 123166712 LTR7 482 + 0 482 68108 225 0 1 38 0 31 187 chain 6941 chr6 171115067 + 123167552 123167683 LTR57 402 + 272 401 177883 74 35 33 22 chain 162676 chr6 171115067 + 123168925 123171425 SVA_F 1814 - 0 1805 22980 10 2 0 620 258 0 63 1 0 120 2 0 13 404 0 25 0 15 30 49 0 35 1 0 667 1 0 87 4 12 108 chain 6491 chr6 171115067 + 123169561 123169805 SVA_F 1814 - 633 796 83914 4 1 0 39 79 0 10 1 0 110 chain 5353 chr6 171115067 + 123169605 123169683 SVA_F 1814 - 725 803 128893 78 chain 1569 chr6 171115067 + 123170014 123170073 SVA_F 1814 - 890 949 83914 59 chain 3407 chr6 171115067 + 123170131 123170309 SVA_F 1814 - 540 718 133064 178 chain 4954 chr6 171115067 + 123170364 123170418 SVA_F 1814 - 723 777 153690 54 chain 2230 chr6 171115067 + 123170494 123170521 SVA_F 1814 - 916 945 236213 10 0 2 17 chain 9056 chr6 171115067 + 123171453 123171581 LTR9B 643 + 86 225 165282 19 0 8 88 4 7 17 chain 6499 chr6 171115067 + 123181164 123181244 Tigger4b 360 + 76 156 181255 80 chain 393847 chr6 171115067 + 123200467 123205347 L1PA7 6471 - 12 4896 10329 7 0 1 139 3 4 171 1 0 52 0 4 120 4 1 4 0 1 78 0 1 82 0 1 93 0 2 76 2 1 201 1 0 4 0 1 61 0 1 19 0 1 34 0 1 227 3 1 607 0 4 118 4 5 329 6 0 423 5 3 50 3 2 966 8 11 388 7 5 584 chain 43539 chr6 171115067 + 123205354 123205894 L1PA7 6471 + 1030 1569 64751 382 1 0 157 chain 93087 chr6 171115067 + 123210057 123211072 L1PA3long 6157 - 1 1016 38633 1015 chain 167819 chr6 171115067 + 123212588 123214763 L1PA8 5853 - 3 2146 22302 90 1 0 19 2 1 47 2 0 14 4 1 70 2 0 46 1 0 451 17 4 19 5 8 38 5 0 33 10 5 76 1 0 574 0 1 19 1 0 115 7 4 287 11 12 48 0 1 160 chain 7443 chr6 171115067 + 123232203 123232314 L1MA7 2200 - 1929 2041 174491 8 0 1 6 1 0 42 7 8 47 chain 115889 chr6 171115067 + 123234209 123235803 THE1C-int 1605 + 0 1605 32498 12 13 12 316 0 2 98 15 22 62 13 12 218 7 1 270 0 1 4 1 0 40 0 1 221 1 0 36 0 9 7 0 1 22 1 0 4 0 1 29 6 7 165 6 5 27 chain 186701 chr6 171115067 + 123248224 123250864 L1PA11 4918 - 2210 4901 20359 155 0 18 235 3 1 14 0 3 29 7 6 12 0 1 210 0 1 187 21 24 390 0 3 37 8 5 124 20 22 399 0 13 75 2 0 4 0 1 138 0 4 73 2 1 11 64 67 161 0 22 46 1 0 3 2 0 33 1 0 43 9 7 15 1 0 30 3 2 4 4 0 37 2 0 25 chain 41042 chr6 171115067 + 123255175 123255617 L1PA2 6032 - 602 1044 67838 442 chain 54538 chr6 171115067 + 123255618 123256224 L1PA2 6032 + 5423 6029 56007 307 1 0 156 0 1 142 chain 535669 chr6 171115067 + 123260509 123266691 L1PA4 6152 - 0 6148 3494 6 0 7 135 0 1 1724 0 3 337 0 1 80 50 0 20 0 1 155 1 0 167 1 2 330 1 0 16 0 2 1748 1 2 552 14 14 316 0 1 528 chain 259050 chr6 171115067 + 123277645 123281289 L1PBa 3878 + 101 3748 15751 36 26 22 4 1 0 42 4 0 4 0 3 12 12 10 107 7 0 180 1 0 86 16 12 8 0 2 129 17 17 125 34 35 55 2 0 251 9 12 369 15 8 174 0 6 212 0 5 6 16 22 320 1 2 101 0 3 219 0 4 34 7 8 217 0 1 149 0 1 100 9 6 274 0 1 191 9 12 16 1 0 23 0 1 4 3 0 6 chain 6991 chr6 171115067 + 123282665 123282746 THE1C 375 - 44 126 177535 16 0 1 65 chain 334685 chr6 171115067 + 123307021 123311190 L1P3 4156 + 0 4139 12034 251 38 36 35 1 0 81 15 0 482 0 1 382 12 8 82 2 0 65 0 2 837 6 7 99 2 1 329 2 1 1155 0 1 106 0 1 39 7 0 106 2 0 6 1 0 26 chain 59534 chr6 171115067 + 123334807 123335485 L1PA4 6152 - 1 678 53087 296 2 1 380 chain 17450 chr6 171115067 + 123370890 123371092 L1PA4 6152 + 5937 6141 134374 70 0 2 132 chain 126079 chr6 171115067 + 123402636 123404205 THE1A-int 1579 - 5 1579 29073 804 0 1 126 0 1 65 0 1 40 0 1 51 14 13 31 0 2 438 chain 36612 chr6 171115067 + 123432870 123433370 LTR12_ 688 + 0 681 74083 144 0 24 158 1 0 19 17 39 58 0 136 103 chain 22010 chr6 171115067 + 123445384 123445705 THE1B 368 + 0 317 120182 15 2 0 14 8 13 130 2 1 21 11 5 118 chain 43731 chr6 171115067 + 123449882 123450386 L1PA4 6152 - 782 1287 64429 216 1 2 287 chain 67916 chr6 171115067 + 123450386 123451185 L1PA4 6152 + 5365 6151 49277 490 12 0 146 1 2 4 1 0 134 1 0 10 chain 9588 chr6 171115067 + 123456574 123456694 MER85 139 - 0 131 162647 17 0 1 22 0 10 81 chain 45443 chr6 171115067 + 123458193 123459377 THE1C-int 1605 + 0 741 62553 14 3 1 34 1 0 67 2 5 35 0 54 23 6 0 5 11 9 29 523 0 51 0 6 86 0 1 25 0 7 164 1 21 104 chain 91103 chr6 171115067 + 123467130 123468398 L1PB1 5432 + 3744 5061 39261 34 0 1 247 1 0 27 48 68 94 1 0 22 1 0 91 0 2 298 4 0 13 19 50 40 0 3 70 1 0 34 0 1 36 2 0 17 0 1 168 chain 26892 chr6 171115067 + 123475349 123475665 L1PA8A 6298 - 9 326 96659 134 1 2 181 chain 95363 chr6 171115067 + 123501750 123502769 L1HS 6032 - 0 1019 37997 1019 chain 56785 chr6 171115067 + 123502769 123503374 L1HS 6032 + 1497 2102 54548 605 chain 437490 chr6 171115067 + 123503911 123509774 L1PA8 5853 + 50 5852 9112 22 5 2 21 50 14 55 0 4 78 0 1 55 18 6 188 3 13 226 21 6 378 11 0 15 6 5 464 0 3 293 7 14 113 1 0 246 0 1 208 0 4 14 0 1 88 1 0 224 0 1 40 0 3 32 2 1 25 5 2 99 0 1 53 5 12 52 0 1 36 0 1 114 0 1 93 8 7 353 28 10 274 0 1 310 3 0 175 5 0 9 0 5 57 0 4 426 3 1 73 0 2 455 1 0 4 0 1 16 1 0 48 2 0 13 0 1 51 28 26 32 12 11 19 1 0 89 chain 28870 chr6 171115067 + 123515070 123515379 AluYf4 310 + 0 307 89583 132 2 0 175 chain 17731 chr6 171115067 + 123520644 123520912 L1PA8 5853 - 0 262 133619 92 2 1 19 2 1 52 1 0 9 1 0 60 14 12 16 chain 3751 chr6 171115067 + 123523808 123523895 LTR12C 1709 + 650 698 211125 33 39 0 15 chain 18463 chr6 171115067 + 123532645 123532997 THE1B 368 - 12 368 131604 31 1 0 82 63 66 38 30 31 58 0 1 49 chain 40231 chr6 171115067 + 123551207 123551676 L1PA5 6144 + 5660 6128 68981 151 1 0 317 chain 300047 chr6 171115067 + 123565157 123569267 L1P2 5180 + 903 5018 13422 15 0 4 106 0 3 5 11 9 4 1 0 251 0 1 30 66 67 48 1 0 7 1 0 5 1 2 44 22 23 679 0 2 130 1 0 103 3 7 9 1 0 211 1 2 116 0 4 424 0 1 4 11 15 288 13 9 113 8 1 50 20 12 460 15 21 5 2 0 442 0 1 64 0 1 4 1 0 284 1 0 29 chain 17431 chr6 171115067 + 123588008 123588228 AluY 311 + 37 259 134432 67 5 6 22 0 1 126 chain 232185 chr6 171115067 + 123604205 123607821 L1PB1 5432 + 2059 5430 17186 440 4 0 50 0 20 47 10 9 200 0 1 7 2 1 9 1 0 6 259 43 93 6 9 4 1 0 8 0 1 50 1 0 509 0 2 160 2 4 139 28 0 126 4 5 171 6 10 259 1 7 6 6 0 159 1 11 4 0 1 245 7 8 103 0 3 5 11 8 76 42 37 23 1 0 9 1 0 11 5 1 9 2 0 51 1 0 17 1 0 41 44 31 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 7 chain 8550 chr6 171115067 + 123664792 123664896 L1PA3long 6157 + 6052 6157 168019 9 0 1 95 chain 20211 chr6 171115067 + 123682091 123682323 L1PA7 6471 - 365 595 126494 140 2 0 90 chain 26528 chr6 171115067 + 123682323 123682672 L1PA7 6471 + 6106 6468 97938 31 2 1 83 4 5 38 0 10 143 1 4 47 chain 26347 chr6 171115067 + 123763421 123763720 AluY 311 + 15 311 98624 118 2 0 165 1 0 13 chain 146084 chr6 171115067 + 123764801 123766405 L1PA3long 6157 - 1136 2741 25150 1085 0 1 519 chain 103113 chr6 171115067 + 123766405 123767536 L1PA3long 6157 + 5020 6152 35873 191 0 1 940 chain 400390 chr6 171115067 + 123769926 123775405 L1PB1 5432 + 12 5413 10086 12 1 0 120 0 1 246 1 0 4 4 3 4 0 2 79 0 1 4 1 0 105 4 8 7 0 1 443 1 3 23 1 0 289 60 51 261 4 0 4 9 0 592 5 6 80 22 23 67 0 1 41 5 0 210 0 1 138 1 0 22 0 3 489 0 1 374 10 8 657 4 0 232 4 0 184 26 29 164 7 10 88 28 3 8 5 0 24 1 0 9 16 11 9 2 0 53 4 3 13 2 1 44 1 0 15 1 0 4 18 8 19 8 5 11 7 5 22 1 0 14 8 7 13 1 0 9 chain 24585 chr6 171115067 + 123784214 123784497 AluY 311 + 14 297 107058 118 0 1 117 1 0 47 chain 539545 chr6 171115067 + 123793219 123799213 L1PA3long 6157 + 5 6157 2895 147 0 1 514 11 0 69 1 0 41 1 129 1301 0 2 211 0 17 147 0 1 427 0 18 2181 0 1 601 0 1 266 0 1 76 chain 20435 chr6 171115067 + 123835918 123836229 L1PA8 5853 + 5536 5853 125794 28 1 0 44 2 0 25 0 1 21 3 7 4 1 0 12 2 1 15 2 1 43 5 4 18 2 1 55 1 10 27 chain 29539 chr6 171115067 + 123877988 123878388 LTR7 482 + 0 470 86481 17 0 1 51 4 42 109 0 1 33 9 38 73 1 2 103 chain 238370 chr6 171115067 + 123878409 123881399 HERVH-int 3825 + 0 3565 16860 333 1 0 31 15 16 93 0 4 10 1 0 34 10 9 15 4 3 10 0 208 12 1 0 88 0 7 251 0 1 61 8 1 23 1 2 16 15 0 242 1 0 309 0 1 164 0 8 134 4 9 208 0 1 24 0 1 298 0 1 243 0 2 98 0 362 232 chain 29456 chr6 171115067 + 123883082 123883486 LTR7 482 + 0 474 86818 50 27 65 109 0 1 5 0 31 213 chain 5229 chr6 171115067 + 123901216 123901299 L1PREC2 3366 - 1701 1778 192738 26 13 7 44 chain 24235 chr6 171115067 + 123903480 123903879 LTR7 482 - 0 482 109022 158 0 10 34 4 36 19 0 1 73 0 50 12 68 58 31 chain 289800 chr6 171115067 + 123905133 123908749 HERVH-int 3825 - 0 3825 14033 225 0 2 260 8 218 39 9 11 57 0 1 684 0 1 25 0 1 295 1 5 285 4 31 215 1 0 13 15 17 9 9 0 79 0 4 439 7 0 8 6 13 109 1 0 68 0 20 35 1 0 4 53 7 14 3 0 13 1 0 14 7 23 4 1 0 8 27 0 23 0 1 4 1 0 11 1 0 197 1 0 111 0 11 211 chain 2276 chr6 171115067 + 123908162 123908189 HERVH-int 3825 - 3349 3376 197322 27 chain 3007 chr6 171115067 + 123909738 123909771 MLT1A 405 - 2 35 224893 33 chain 3048 chr6 171115067 + 123923309 123923345 L1PB2 3958 + 3782 3818 224028 36 chain 14778 chr6 171115067 + 123933403 123933564 L1PA4 6152 + 5990 6151 142007 161 chain 11455 chr6 171115067 + 123946672 123946874 L1MA3 4352 + 4138 4332 154484 16 0 2 79 4 0 25 8 6 16 2 1 5 1 0 26 1 0 14 1 0 4 chain 14050 chr6 171115067 + 123947642 123947959 Tigger1 2417 - 615 863 144382 39 9 20 86 0 1 20 6 15 38 10 0 5 80 0 24 chain 119519 chr6 171115067 + 123995407 123996988 THE1B-int 1605 - 0 1603 31209 181 1 0 409 4 3 312 2 3 231 9 34 41 3 1 19 16 12 51 5 6 61 0 3 236 chain 6289 chr6 171115067 + 124033516 124033588 L1PA4 6152 + 6066 6138 182888 72 chain 8099 chr6 171115067 + 124060566 124060665 MLT1A0 366 + 251 350 170492 99 chain 5975 chr6 171115067 + 124073386 124073481 MLT1A 405 + 281 381 185470 60 11 16 24 chain 16168 chr6 171115067 + 124081842 124082178 THE1C 375 - 39 375 137847 9 0 1 68 16 15 37 23 21 4 0 1 41 56 61 30 4 0 48 chain 3569 chr6 171115067 + 124092776 124092823 MER4D 903 + 848 894 214144 24 1 0 22 chain 23152 chr6 171115067 + 124114627 124114926 MLT2A1 477 + 0 384 114883 75 0 86 8 4 1 9 0 1 24 0 1 179 chain 408880 chr6 171115067 + 124115196 124120296 HERVL-int 5654 + 0 5644 9837 470 1 3 158 40 557 330 0 18 1076 2 3 848 0 1 5 0 2 510 0 1 20 1 0 62 0 8 704 0 27 92 5 8 234 0 1 37 1 2 48 42 6 122 1 0 291 chain 30249 chr6 171115067 + 124120305 124120691 MLT2A1 477 + 0 385 84063 169 4 1 9 0 1 24 1 2 179 chain 11145 chr6 171115067 + 124145734 124145872 L1PA8 5853 + 5711 5847 155651 29 2 1 19 1 0 87 chain 40640 chr6 171115067 + 124244649 124245096 L1PA3long 6157 + 5710 6157 68384 447 chain 4589 chr6 171115067 + 124294795 124294874 MADE1 96 - 0 96 199760 20 17 34 42 chain 22675 chr6 171115067 + 124296997 124297363 THE1B 368 + 0 368 117188 103 11 0 70 1 0 17 35 50 66 7 6 56 chain 3098 chr6 171115067 + 124325691 124325725 L1PA6 6164 - 269 303 222939 34 chain 23748 chr6 171115067 + 124325725 124325997 L1PA6 6164 + 5874 6146 111787 272 chain 23102 chr6 171115067 + 124340032 124340379 THE1B 368 - 0 351 115134 125 2 1 12 44 50 11 1 0 152 chain 55419 chr6 171115067 + 124343039 124343681 L1PA5 6144 - 2 640 55452 7 4 0 631 chain 12924 chr6 171115067 + 124349535 124349687 L1PA4 6152 + 5990 6151 148532 114 1 10 37 chain 19709 chr6 171115067 + 124351233 124351508 MER1A 529 + 253 529 128067 58 0 1 50 0 2 90 15 13 62 chain 53492 chr6 171115067 + 124352391 124352999 L1P1 4361 - 1055 1662 56688 146 1 0 461 chain 47654 chr6 171115067 + 124352999 124353563 L1PA5 6144 + 5574 6141 60734 231 5 6 86 0 2 242 chain 16092 chr6 171115067 + 124372583 124372765 L1PA5 6144 - 12 194 138080 182 chain 20447 chr6 171115067 + 124417787 124418023 AluY 311 + 70 303 125763 56 3 0 177 chain 6516 chr6 171115067 + 124420907 124420989 MER20 218 + 123 205 181115 82 chain 6054 chr6 171115067 + 124438741 124438808 L1PA4 6152 + 6085 6152 184779 67 chain 11629 chr6 171115067 + 124459956 124460207 L1PB1 5432 + 5191 5422 153779 28 1 0 60 2 1 10 29 18 18 32 27 17 1 0 22 1 0 30 chain 29648 chr6 171115067 + 124460224 124460532 AluYb9 318 - 10 318 86080 308 chain 6320 chr6 171115067 + 124482849 124482990 L1PA16 3655 + 3500 3619 182640 71 9 6 7 2 0 7 21 5 7 1 0 16 chain 213473 chr6 171115067 + 124486663 124488986 L1PA3long 6157 - 0 2323 18256 2323 chain 29703 chr6 171115067 + 124498918 124499227 AluYa5 310 - 1 310 85818 309 chain 4601 chr6 171115067 + 124499337 124499420 MLT1A0 366 + 268 350 199623 46 18 17 19 chain 101493 chr6 171115067 + 124501691 124503123 THE1B-int 1605 - 0 1605 36401 68 0 1 122 0 178 444 31 39 54 18 17 114 1 5 112 65 48 403 chain 45263 chr6 171115067 + 124542205 124542707 L1PA3long 6157 + 5650 6152 62754 502 chain 357415 chr6 171115067 + 124559699 124564194 L1PA7 6471 + 15 6470 11418 124 0 2065 282 7 22 42 0 1 73 3 9 69 0 5 24 1 2 125 6 13 539 0 1 906 0 2 121 0 2 761 1 2 55 160 0 213 0 5 143 0 3 395 0 1 79 0 1 85 4 8 277 chain 33894 chr6 171115067 + 124565236 124565608 L1PA2 6032 - 1 373 77780 372 chain 4060 chr6 171115067 + 124592661 124592732 THE1D 372 + 300 370 206483 7 1 0 4 0 1 23 6 5 30 chain 18466 chr6 171115067 + 124594329 124594679 THE1D 372 + 5 372 131593 6 0 5 36 8 22 8 7 0 4 6 0 82 16 26 16 13 14 51 13 14 51 1 0 32 chain 4713 chr6 171115067 + 124613731 124613789 MER41A 554 - 480 539 198360 4 0 1 54 chain 7602 chr6 171115067 + 124618740 124618864 L1P3b 214 - 95 214 173529 16 0 1 72 17 11 19 chain 23650 chr6 171115067 + 124629133 124629476 L1PA8 5853 - 0 336 112310 92 2 1 19 2 1 51 18 16 65 2 0 44 1 0 47 chain 14308 chr6 171115067 + 124642443 124642627 L1PA7 6471 + 6287 6470 143538 32 1 2 143 2 0 6 chain 17187 chr6 171115067 + 124651939 124652187 MER1B 344 + 95 336 135071 18 8 0 107 4 0 46 10 15 55 chain 506211 chr6 171115067 + 124663994 124669759 L1PA4 6152 - 16 5778 6450 341 0 1 2217 10 9 446 0 1 2397 0 4 22 8 1 121 1 0 202 chain 32434 chr6 171115067 + 124669759 124670146 L1PA4 6152 + 7 394 80144 387 chain 226924 chr6 171115067 + 124678923 124681473 L1PA4 6152 - 0 2557 17489 148 10 11 685 0 4 645 0 1 931 0 1 131 chain 540207 chr6 171115067 + 124728348 124734412 L1PA4 6152 - 6 6096 2788 1788 0 4 711 0 1 636 0 1 138 3 0 290 0 3 73 0 1 20 0 8 40 0 3 994 0 1 270 0 3 62 0 2 124 0 2 915 chain 3748 chr6 171115067 + 124738531 124738579 L1MDa 1598 + 672 720 211187 48 chain 24595 chr6 171115067 + 124747829 124748188 THE1B 368 + 0 368 107021 169 1 0 29 35 45 125 chain 45477 chr6 171115067 + 124786241 124786787 L1PA7 6471 + 5923 6470 62518 352 0 1 44 0 1 134 4 3 12 chain 20105 chr6 171115067 + 124854406 124854637 AluY 311 + 71 302 126805 231 chain 18494 chr6 171115067 + 124861860 124862082 MER47A 366 + 72 294 131517 222 chain 23951 chr6 171115067 + 124874445 124874742 AluSp 311 - 6 301 110614 12 2 0 283 chain 26632 chr6 171115067 + 124881244 124881589 THE1C 375 + 0 348 97551 71 0 1 113 1 2 42 1 2 117 chain 35441 chr6 171115067 + 124885260 124885845 LTR12 884 + 5 883 75630 20 1 0 179 16 108 12 0 25 27 50 0 65 18 4 29 7 12 67 0 236 94 chain 6961 chr6 171115067 + 124885847 124885934 LTR72 515 - 419 506 177738 87 chain 122400 chr6 171115067 + 124890926 124892498 THE1A-int 1579 + 0 1579 30249 12 13 15 262 8 7 405 0 15 267 8 0 419 1 0 177 chain 45232 chr6 171115067 + 124901614 124902303 L1MA3 4352 + 47 712 62788 109 1 0 18 0 3 58 3 0 10 16 19 42 2 0 6 0 1 26 0 1 78 48 16 12 0 5 96 0 1 164 chain 29858 chr6 171115067 + 124902303 124902620 AluYb8 318 + 0 317 85251 317 chain 18198 chr6 171115067 + 124910820 124911088 L1PA8 5853 - 0 263 132333 93 1 0 19 2 1 15 4 5 32 17 15 65 2 0 18 chain 20446 chr6 171115067 + 124932522 124932793 L1PA8 5853 - 2 268 125767 91 1 0 19 2 1 40 0 1 8 1 0 12 1 0 71 2 0 23 chain 3092 chr6 171115067 + 124936798 124936904 L1MEf 1413 - 732 837 223065 4 0 1 26 54 52 22 chain 26093 chr6 171115067 + 124985696 124985968 AluYa5 310 + 38 310 99654 272 chain 31571 chr6 171115067 + 125007897 125008974 MLT2A1 477 + 0 477 81528 141 1 2 4 0 1 21 1 5 150 1 0 61 4 0 14 3 0 9 5 0 9 614 21 39 chain 543049 chr6 171115067 + 125027989 125033976 L1PA2 6032 - 3 6032 2330 119 0 1 1679 0 4 1091 0 3 7 7 13 549 0 1 1015 0 12 728 0 1 665 0 14 127 chain 27442 chr6 171115067 + 125042280 125042567 AluYd8 298 + 0 287 94841 287 chain 548717 chr6 171115067 + 125046842 125052868 L1PA2 6032 + 2 6030 1613 72 0 1 182 1 0 549 0 1 1761 0 1 3095 0 2 353 2 0 11 chain 46494 chr6 171115067 + 125058649 125059229 THE1C-int 1605 + 0 594 61605 13 4 11 421 0 7 124 0 1 13 1 0 4 chain 17972 chr6 171115067 + 125084396 125084775 MSTA 426 - 12 422 132934 96 11 19 18 56 54 16 4 7 56 27 48 37 8 9 50 chain 25145 chr6 171115067 + 125109564 125109927 THE1C 375 - 12 375 104033 13 1 0 119 0 3 30 29 27 171 chain 554752 chr6 171115067 + 125125650 125131782 L1PA3long 6157 + 0 6152 855 573 0 4 612 0 3 778 0 1 1278 0 6 623 0 1 303 0 1 141 0 1 1210 0 1 559 0 2 55 chain 12873 chr6 171115067 + 125138310 125138501 MER30 238 + 31 236 148736 75 4 0 11 1 22 60 4 1 36 chain 19126 chr6 171115067 + 125155347 125155559 L1PA3long 6157 + 5944 6156 129756 212 chain 27693 chr6 171115067 + 125159384 125159755 THE1C 375 + 0 375 94066 142 0 4 39 1 2 51 1 0 5 6 7 100 1 0 25 chain 129869 chr6 171115067 + 125161119 125162499 L1HS 6032 - 468 1848 28117 1380 chain 45070 chr6 171115067 + 125162499 125162986 L1HS 6032 + 5543 6030 62971 487 chain 59125 chr6 171115067 + 125176495 125177173 L1P1 4361 + 3666 4341 53311 485 1 0 154 1 0 23 2 1 12 chain 16490 chr6 171115067 + 125183366 125183567 THE1A-int 1579 - 13 213 136959 4 1 0 196 chain 10431 chr6 171115067 + 125201377 125201573 L1PA15 4387 + 4176 4356 158558 9 1 0 16 20 16 50 6 3 46 2 0 9 4 0 4 2 0 27 chain 8996 chr6 171115067 + 125204808 125204916 L1P4 1494 - 1159 1267 165621 108 chain 24916 chr6 171115067 + 125205142 125205440 AluSc 308 + 10 308 105239 298 chain 30081 chr6 171115067 + 125211552 125211986 LTR7Y 441 + 0 441 84558 103 9 0 57 56 72 209 chain 301347 chr6 171115067 + 125211986 125217220 HERVH-int 3825 + 0 3825 13355 532 5 0 38 65 0 10 1 0 24 28 0 15 0 37 42 3 2 50 0 1 12 0 2 13 0 3 109 1594 0 795 4 31 330 1 0 404 1 2 668 8 218 254 3 8 225 chain 3202 chr6 171115067 + 125212561 125212595 HERVH-int 3825 + 450 484 204054 34 chain 2669 chr6 171115067 + 125212595 125212625 HERVH-int 3825 + 540 570 230796 30 chain 2259 chr6 171115067 + 125212662 125212689 HERVH-int 3825 + 656 683 215163 27 chain 135522 chr6 171115067 + 125212937 125214527 LTR12C 1709 + 0 1709 26922 650 0 119 68 1 0 274 1 0 6 2 0 107 0 4 481 chain 30163 chr6 171115067 + 125218475 125218909 LTR7Y 441 + 0 441 84292 103 12 3 54 56 72 209 chain 44155 chr6 171115067 + 125221295 125221806 MER9a1 513 - 0 513 64004 26 0 1 441 1 2 43 chain 10345 chr6 171115067 + 125225272 125225393 THE1D 372 + 211 332 158927 121 chain 6446 chr6 171115067 + 125236964 125237035 AluSp 311 - 26 97 181662 71 chain 6274 chr6 171115067 + 125280261 125280356 L1MA4A 3247 + 3026 3116 182977 66 5 1 14 1 0 9 chain 4692 chr6 171115067 + 125296158 125296217 X6A_LINE 155 - 59 118 198617 59 chain 12555 chr6 171115067 + 125303193 125303386 MER4A 717 - 532 717 150022 58 16 8 28 0 1 4 4 3 37 0 1 16 1 0 29 chain 3416 chr6 171115067 + 125309062 125309104 Cheshire 1285 - 791 833 216842 42 chain 2887 chr6 171115067 + 125313189 125313322 MER5A1 166 - 35 166 227254 17 1 0 16 80 79 19 chain 23876 chr6 171115067 + 125328395 125328681 AluSp 311 - 16 300 111049 167 2 0 117 chain 25602 chr6 171115067 + 125342414 125342710 AluSg7 307 - 11 307 101719 296 chain 11114 chr6 171115067 + 125349140 125349315 L1MA1 4479 - 328 500 155761 7 1 0 38 2 0 28 1 0 23 7 8 68 chain 25562 chr6 171115067 + 125351072 125351416 THE1A 353 - 11 353 101924 64 11 10 158 6 5 105 chain 125478 chr6 171115067 + 125351421 125353007 THE1A-int 1579 - 5 1579 29251 244 8 0 884 6 8 112 6 0 326 chain 25749 chr6 171115067 + 125353007 125353348 THE1A 353 - 0 353 101089 172 3 14 57 1 0 7 1 0 36 0 3 64 chain 195456 chr6 171115067 + 125354354 125356496 L1PA3long 6157 - 11 2153 19544 6 0 1 1548 2 1 586 chain 13305 chr6 171115067 + 125356496 125356637 L1P1 4361 + 1778 1919 146722 141 chain 46520 chr6 171115067 + 125357074 125357648 L1PA8 5853 - 6 573 61581 87 1 0 19 2 1 52 1 0 8 1 0 72 2 0 46 1 0 282 chain 29400 chr6 171115067 + 125357648 125358013 L1PA8 5853 + 4825 5202 87074 181 1 8 68 0 2 87 0 3 28 chain 119625 chr6 171115067 + 125360428 125361919 L1P3 4156 + 2636 4136 31170 264 0 2 483 3 10 99 1 0 25 1 0 6 0 1 82 0 1 63 0 1 205 0 2 227 2 0 7 2 1 21 chain 17708 chr6 171115067 + 125386155 125386411 AluSc8 310 + 16 259 133682 114 1 0 4 38 26 99 chain 11890 chr6 171115067 + 125396195 125396401 MER30 238 + 0 238 152644 15 15 22 64 2 0 5 4 24 69 12 19 20 chain 208805 chr6 171115067 + 125444755 125449056 L1PBa1 4058 + 10 2832 18580 26 1 0 12 36 33 182 0 3 162 2 0 120 6 4 4 0 1 58 16 15 24 11 8 18 1 2 61 0 1 359 26 10 39 0 8 301 3 0 141 2 1 7 0 1 51 1 0 388 1446 0 125 4 13 15 19 0 75 4 5 31 1 2 149 7 0 367 chain 114491 chr6 171115067 + 125446817 125448259 LTR12C 1709 + 0 1709 32950 277 4 0 185 8 7 32 8 12 135 0 278 186 1 0 5 3 1 106 11 4 370 0 1 28 1 0 82 chain 4738 chr6 171115067 + 125449285 125449343 MER57B1 401 + 0 58 198052 58 chain 15392 chr6 171115067 + 125458604 125458817 MER30 238 - 2 213 140225 82 3 2 42 8 7 78 chain 26459 chr6 171115067 + 125465582 125465936 MLT2A1 477 + 0 383 98212 171 3 0 15 1 3 39 0 24 96 0 6 29 chain 3497 chr6 171115067 + 125466056 125466095 MER39 703 + 654 693 215394 39 chain 23733 chr6 171115067 + 125583045 125583403 THE1C 375 - 19 375 111870 161 14 15 94 33 30 56 chain 411325 chr6 171115067 + 125601091 125606470 L1PA7 6471 + 3 6470 9767 393 5 7 37 11 12 193 0 21 11 4 5 62 4 5 214 3 15 772 0 5 62 1 5 338 325 10 350 0 2 118 3 5 46 7 6 73 0 1350 451 1 0 7 0 1 229 0 2 139 1 0 210 4 2 35 1 0 37 0 6 382 1 0 849 chain 86816 chr6 171115067 + 125609710 125610640 L1HS 6032 + 5102 6032 40849 930 chain 294545 chr6 171115067 + 125640093 125643222 L1HS 6032 + 2903 6032 13728 3129 chain 57599 chr6 171115067 + 125692597 125693225 L1HS 6032 - 3 630 54188 148 1 0 479 chain 103053 chr6 171115067 + 125707347 125708588 L1PA7 6471 - 1 3039 35975 92 0 2 66 1 3 876 0 1 83 0 1792 123 chain 173986 chr6 171115067 + 125708833 125711247 SVA_E 1901 - 0 1886 21594 942 2 1 31 3 0 110 523 0 664 1 0 138 chain 3325 chr6 171115067 + 125709921 125709983 SVA_E 1901 - 737 799 126304 62 chain 30224 chr6 171115067 + 125710023 125710393 SVA_F 1814 - 540 1150 84119 97 0 1 162 0 12 8 7 1 28 0 233 68 chain 535509 chr6 171115067 + 125717070 125723388 L1PA5 6144 + 3 6144 3514 643 184 0 545 0 3 1119 2 1 548 0 1 819 1 0 51 12 17 5 1 0 902 0 1 174 2 0 84 0 1 389 0 1 451 0 1 51 0 1 66 10 8 259 chain 11548 chr6 171115067 + 125730678 125730862 THE1B 368 + 117 306 154113 52 25 26 4 0 1 14 0 4 12 1 0 76 chain 23000 chr6 171115067 + 125739056 125739325 L1PA7 6471 - 17 286 115623 269 chain 34966 chr6 171115067 + 125739325 125739720 L1PA7 6471 + 5784 6177 76236 88 2 0 305 chain 20717 chr6 171115067 + 125773242 125773491 L1PA6 6164 - 2 251 124904 249 chain 23607 chr6 171115067 + 125778703 125779040 THE1A 353 - 2 341 112539 116 5 6 29 4 6 81 5 4 97 chain 114005 chr6 171115067 + 125779052 125780490 THE1A-int 1579 - 0 1579 33095 468 4 5 254 30 166 542 1 2 32 0 3 107 chain 27450 chr6 171115067 + 125780492 125780841 THE1A 353 - 2 346 94817 23 0 1 52 5 0 165 2 1 102 chain 20332 chr6 171115067 + 125785646 125785990 THE1B 368 + 0 368 126132 44 29 44 84 1 0 26 34 45 64 1 0 61 chain 122188 chr6 171115067 + 125785990 125787560 THE1B-int 1605 + 0 1600 30311 12 0 1 310 1 0 107 0 25 12 9 10 97 1 4 911 0 1 110 chain 24617 chr6 171115067 + 125788652 125788986 THE1A 353 + 0 352 106904 109 2 1 72 1 0 4 0 1 15 1 0 14 7 27 109 chain 6374 chr6 171115067 + 125806615 125806686 THE1A-int 1579 - 1480 1551 182222 71 chain 23550 chr6 171115067 + 125806712 125807056 THE1A 353 - 0 353 112851 110 2 3 41 0 1 73 13 22 7 1 0 48 0 1 32 2 0 15 chain 9412 chr6 171115067 + 125882507 125882824 L1MA4 2864 - 63 334 163496 25 16 14 16 158 114 102 chain 34951 chr6 171115067 + 125911535 125912044 MER75 514 + 14 513 76262 17 28 31 39 0 1 85 15 0 238 1 0 71 0 2 15 chain 7999 chr6 171115067 + 125927365 125927465 L1P1 4361 - 33 132 171069 23 1 0 76 chain 163374 chr6 171115067 + 125928447 125930304 L1PA5 6144 - 0 1869 22894 11 3 2 318 0 1 1458 0 12 67 chain 17807 chr6 171115067 + 125930357 125930563 L1PA5 6144 + 4229 4447 133385 113 0 12 93 chain 151091 chr6 171115067 + 125930563 125932255 L1PA5 6144 + 4450 6143 24463 1435 0 1 257 chain 64666 chr6 171115067 + 125956898 125957666 L1PA7 6471 + 5679 6450 50716 24 0 1 135 4 5 13 0 1 592 chain 5557 chr6 171115067 + 125959291 125959422 HERV16-int 1105 - 261 393 189506 7 2 0 11 1 2 20 18 19 44 9 10 19 chain 121645 chr6 171115067 + 125965416 125966843 LTR12C 1709 + 0 1709 30499 526 1 0 124 0 278 184 1 0 5 3 1 12 0 4 90 0 4 481 chain 67589 chr6 171115067 + 125974782 125975613 L1PA7 6471 - 3 872 49405 10 0 2 132 3 17 276 7 24 208 0 1 96 1 0 74 0 4 20 0 1 4 chain 265917 chr6 171115067 + 126007998 126012909 L1PB2 3958 - 212 3850 15397 40 5 0 25 1 0 17 0 1 46 2 1 56 7 0 10 0 5 72 0 4 14 9 5 11 2 0 62 4 0 14 0 3 53 2 0 274 0 1 50 12 11 47 2 1 83 3 33 31 0 1 33 6 0 68 0 1 123 0 1 64 5 6 320 0 1 12 1 2 5 1 0 9 1 0 4 0 1 13 4 5 135 1281 0 501 0 3 8 0 1 202 3 0 60 0 6 9 6 0 36 0 3 635 0 1 277 6 3 47 1 0 5 7 0 37 2 0 30 chain 40918 chr6 171115067 + 126022993 126023444 LTR7 482 - 0 482 68015 187 0 31 264 chain 300585 chr6 171115067 + 126024705 126028457 HERVH-int 3825 - 0 3825 13390 225 3 8 254 8 218 770 0 4 630 4 31 462 15 0 444 1 0 49 2 1 16 2 22 36 21 0 24 24 0 12 1 0 15 7 1 14 4 0 9 1 0 10 1 0 38 129 0 309 0 11 212 chain 2869 chr6 171115067 + 126027839 126027871 HERVH-int 3825 - 3261 3293 227547 32 chain 3756 chr6 171115067 + 126027876 126027921 HERVH-int 3825 - 3293 3339 211043 19 0 1 26 chain 40014 chr6 171115067 + 126028459 126028909 LTR7 482 - 0 482 69303 174 0 3 10 0 31 212 2 0 52 chain 7440 chr6 171115067 + 126046880 126046968 L1PA5 6144 + 6056 6142 174514 78 2 0 8 chain 12873 chr6 171115067 + 126059829 126059977 L1PA5 6144 + 5984 6132 148735 148 chain 135315 chr6 171115067 + 126091312 126092814 SVA_C 1631 + 0 1631 26951 477 0 2 358 0 134 47 1 0 24 0 1 574 7 0 14 chain 23656 chr6 171115067 + 126093188 126093491 AluYf4 310 - 7 309 112279 33 1 0 54 9 10 73 2 1 131 chain 78720 chr6 171115067 + 126096992 126097961 LTR5_Hs 974 - 0 974 44177 103 2 0 37 8 15 285 6 4 23 6 6 212 0 1 208 0 1 79 chain 6975 chr6 171115067 + 126101392 126101464 tRNA-Glu-GAG_ 72 - 0 72 177648 72 chain 105349 chr6 171115067 + 126168738 126169950 L1PA6 6164 + 4939 6160 35413 6 0 3 364 0 4 30 0 1 665 4 5 143 chain 64828 chr6 171115067 + 126173638 126174581 L1PB3 3668 - 896 1837 50647 105 2 0 161 4 0 69 15 0 270 4 4 13 47 62 96 0 4 40 0 1 56 5 4 56 chain 10346 chr6 171115067 + 126233447 126233590 HERV17-int 4347 - 466 609 158921 109 4 0 6 7 11 17 chain 151616 chr6 171115067 + 126256498 126258307 L1PA3long 6157 - 10 1852 24384 102 0 1 24 0 1 4 2 1 339 0 1 4 8 40 88 1 0 1237 chain 60496 chr6 171115067 + 126260125 126260869 MER4E 760 + 0 753 52582 93 0 1 275 8 14 51 1 0 233 0 3 83 chain 14400 chr6 171115067 + 126272269 126272522 MER67B 652 + 359 617 143209 15 1 0 21 0 1 92 23 29 10 1 0 4 4 5 33 13 12 36 chain 33171 chr6 171115067 + 126275914 126276378 LTR15 485 - 10 485 78949 18 0 1 15 0 2 39 1 6 47 11 1 39 10 11 9 0 4 132 0 2 25 4 0 98 0 10 16 chain 8033 chr6 171115067 + 126298393 126298508 L1MC1 2226 - 186 296 170848 48 2 0 12 3 0 50 chain 4820 chr6 171115067 + 126301030 126301080 5S 121 - 71 121 197115 50 chain 133017 chr6 171115067 + 126364201 126365644 L1PA3long 6157 - 0 1443 27416 1443 chain 53703 chr6 171115067 + 126379105 126379726 L1PA7 6471 - 1 624 56545 11 2 0 6 0 3 89 0 1 513 chain 22285 chr6 171115067 + 126379730 126379999 L1P3 4156 + 3464 3734 118969 105 0 1 164 chain 23964 chr6 171115067 + 126396447 126396834 MSTA 426 + 0 426 110543 108 20 48 42 1 0 9 8 0 7 26 26 56 0 20 110 chain 8749 chr6 171115067 + 126404077 126404240 L1MA9 1812 + 1240 1398 166922 5 1 0 73 27 24 9 1 0 4 0 1 35 1 0 7 chain 23483 chr6 171115067 + 126443065 126443420 THE1B 368 + 0 368 113204 105 8 9 55 1 0 21 7 10 7 0 7 10 17 20 124 chain 22148 chr6 171115067 + 126448660 126448904 L1PA4 6152 - 9 253 119600 244 chain 19793 chr6 171115067 + 126468974 126469205 L1PA7 6471 + 6242 6470 127841 67 1 0 152 2 0 9 chain 502146 chr6 171115067 + 126482237 126488715 L1PA7 6471 - 10 6471 6718 153 2 1 435 2 0 117 1 0 52 1 0 74 20 45 333 2 1 578 1 5 496 0 6 235 0 1 156 6 85 521 8 7 331 0 1 115 0 3 5 13 6 66 0 1 177 302 0 194 1 0 731 0 149 147 1 5 190 1 25 311 7 5 164 14 13 116 0 2 385 0 4 14 chain 23434 chr6 171115067 + 126530584 126530881 AluY 311 + 0 289 113449 133 6 1 105 2 0 27 2 1 22 chain 7372 chr6 171115067 + 126536823 126536942 L1MA3 4352 - 4199 4317 174959 56 17 16 46 chain 16466 chr6 171115067 + 126537426 126537678 L1MA3 4352 - 3194 3468 137020 48 22 0 29 8 9 83 0 43 62 chain 309022 chr6 171115067 + 126558958 126562479 L1PA4 6152 - 2603 6142 13045 262 0 1 777 0 1 188 1 0 116 0 4 925 1 0 1119 0 14 132 chain 228418 chr6 171115067 + 126562486 126565080 L1PA4 6152 + 3534 6143 17392 472 7 18 641 0 1 1113 0 1 133 0 2 90 1 0 33 0 1 104 chain 28112 chr6 171115067 + 126590125 126590434 AluYa5 310 + 0 306 92598 97 3 1 34 1 0 174 chain 117283 chr6 171115067 + 126602911 126604308 L1PA7 6471 - 10 1407 31951 146 1 0 513 0 1 91 4 0 94 1 2 104 0 3 443 chain 134039 chr6 171115067 + 126604308 126605890 L1PA7 6471 + 3398 4987 27197 91 0 2 6 1 0 109 0 1 203 1 5 94 0 1 84 0 2 7 5 0 679 0 1 32 0 1 262 0 1 8 chain 557808 chr6 171115067 + 126647744 126653888 L1PA3long 6157 + 0 6157 524 6 1 0 572 0 1 2671 0 1 647 0 6 389 0 2 1015 0 4 843 chain 38572 chr6 171115067 + 126664549 126665077 MLT2A2 560 - 18 560 71338 129 3 14 7 6 0 272 0 5 40 8 7 32 1 6 30 chain 3593 chr6 171115067 + 126671220 126671377 L1MD2 1676 - 566 724 213770 21 100 101 36 chain 6008 chr6 171115067 + 126679930 126680046 L1P4a 3072 + 2423 2555 185164 58 32 48 26 chain 124792 chr6 171115067 + 126690061 126691890 L1PB1 5432 - 106 1940 29453 18 31 21 6 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 9 5 9 23 9 0 12 1 0 83 6 8 41 0 5 67 0 2 79 17 18 121 0 3 48 4 0 150 1 5 203 0 3 157 0 2 106 9 10 95 10 15 54 1 5 98 2 0 50 5 6 140 0 3 34 chain 3942 chr6 171115067 + 126723832 126723894 L1MB8 1703 - 260 321 208234 15 6 5 41 chain 34607 chr6 171115067 + 126728711 126729218 L1PA11 4918 - 385 876 76749 12 9 4 9 4 0 19 1 0 14 2 0 67 14 15 59 4 0 7 1 0 118 0 1 123 1 0 43 chain 5194 chr6 171115067 + 126729218 126729281 L1PA11 4918 + 3909 3972 189802 63 chain 118986 chr6 171115067 + 126737045 126738606 THE1B-int 1605 + 0 1600 31421 164 0 1 95 3 0 143 1 2 25 1 26 106 9 12 90 5 6 497 21 21 197 0 4 78 0 5 16 0 1 42 0 1 68 chain 29165 chr6 171115067 + 126739898 126740232 L1PA5 6144 + 5805 6137 88224 321 2 0 11 chain 10568 chr6 171115067 + 126744993 126745109 L1PA3long 6157 - 4 120 157966 116 chain 53388 chr6 171115067 + 126762626 126763499 L1PB1 5432 - 9 853 56767 5 1 0 14 1 0 13 1 0 4 0 3 14 1 0 4 0 2 18 2 0 14 68 53 42 1 0 16 2 1 52 2 0 6 25 20 27 19 17 129 0 1 345 3 0 44 chain 9405 chr6 171115067 + 126763503 126763615 L1PB1 5432 + 4457 4569 163534 112 chain 40919 chr6 171115067 + 126787879 126788540 L1PREC2 3366 + 2316 2951 68014 187 9 0 76 4 8 93 0 1 24 1 2 4 1 0 41 2 0 54 1 0 44 1 0 4 3 0 11 58 45 12 2 0 29 chain 22932 chr6 171115067 + 126789295 126789590 AluSp 311 + 12 306 115951 35 7 6 253 chain 3066 chr6 171115067 + 126811316 126811357 L1MA8 2339 - 1610 1651 223635 41 chain 26568 chr6 171115067 + 126816714 126817070 THE1A 353 - 0 353 97772 161 3 0 82 6 5 15 0 1 89 chain 120580 chr6 171115067 + 126817081 126818627 THE1A-int 1579 - 12 1579 30847 55 1 2 316 7 16 59 6 10 137 6 7 95 6 7 411 0 4 423 0 1 24 chain 26501 chr6 171115067 + 126818627 126818973 THE1A 353 - 0 345 98038 243 7 6 96 chain 37657 chr6 171115067 + 126826012 126826501 MER9a3 513 + 0 513 72607 17 0 2 160 4 5 74 1 0 60 0 21 95 0 1 78 chain 383601 chr6 171115067 + 126827397 126832814 L1PA8 5853 + 393 5847 10653 130 58 39 32 19 23 47 1 3 7 0 1 53 12 1 6 0 7 16 0 1 5 2 1 13 2 5 31 5 6 273 15 16 32 1 0 201 6 8 154 2 4 46 0 1 16 0 21 120 3 4 485 1 0 537 2 3 122 15 8 48 10 20 17 4 13 22 0 1 99 0 2 108 1 0 10 1 2 180 9 10 131 0 1 124 5 0 218 1 2 222 6 5 13 15 16 109 3 6 107 0 2 5 13 13 164 0 5 193 0 1 47 0 2 209 7 9 557 1 0 45 2 0 69 25 24 33 11 10 15 2 1 86 chain 3783 chr6 171115067 + 126838467 126838511 L1MA2 4263 - 3561 3605 210619 44 chain 5335 chr6 171115067 + 126859355 126859450 Charlie2b 853 + 28 118 191690 19 12 8 28 2 1 34 chain 42740 chr6 171115067 + 126866583 126867146 PRIMA4_LTR 623 + 0 615 65732 87 0 1 4 0 1 95 4 0 34 3 4 67 0 57 34 4 0 231 chain 6956 chr6 171115067 + 126877797 126877967 MER5B 177 + 5 177 177774 50 70 71 35 0 1 15 chain 451788 chr6 171115067 + 126880195 126885718 L1PA7 6471 + 901 6454 8706 27 0 1 182 0 1 16 0 1 270 6 1 194 0 1 38 4 6 485 0 1 12 3 4 86 0 1 409 10 11 622 3 7 272 0 4 283 10 8 141 21 12 6 0 7 175 0 1 332 0 7 130 15 23 686 1 0 256 1 4 49 0 1 24 0 2 754 chain 90180 chr6 171115067 + 126906592 126907597 L1PA4 6152 + 5134 6140 39585 515 0 1 490 chain 485456 chr6 171115067 + 126914975 126920501 L1PA4 6152 - 1 5519 7542 332 0 1 287 0 1 4 1 0 891 1 0 70 0 1 880 1 2 1166 0 7 484 1 0 83 1 0 364 0 3 331 1 0 403 17 0 208 chain 522139 chr6 171115067 + 126930154 126936687 L1PA7 6471 - 4 6471 4943 9 0 2 9 0 1 130 1 0 88 1 2 172 0 1 350 0 1 81 2 1 256 1 0 175 0 1 549 1 0 99 0 1 237 16 17 261 4 5 106 0 1 68 1 0 8 0 1 256 0 5 42 16 3 819 8 1 68 17 0 476 0 7 62 1 2 15 36 10 271 0 1 431 1 0 126 0 1 180 6 17 571 64 59 177 31 1 234 chain 29307 chr6 171115067 + 126943766 126944076 AluYa5 310 - 0 310 87533 310 chain 7495 chr6 171115067 + 126976773 126976883 THE1B 368 + 259 368 174181 47 14 13 49 chain 468226 chr6 171115067 + 126994696 127000000 L1HS 6032 + 3 5314 8099 253 5 0 2993 0 4 191 4 11 111 0 1 1075 1 0 365 0 1 306 chain 61163 chr6 171115067 + 127000000 127000714 L1PA3long 6157 + 5442 6157 52269 86 0 2 472 5 7 143 3 0 5 chain 3113 chr6 171115067 + 127013308 127013552 L1MB8 1703 + 1478 1658 222679 34 191 127 19 chain 533668 chr6 171115067 + 127047430 127053540 L1PA5 6144 + 3 6137 3746 132 11 25 540 1 2 617 0 3 589 0 1 269 1 2 573 0 1 729 0 4 247 2 0 1363 0 1 1036 chain 8382 chr6 171115067 + 127077958 127078059 THE1-int 844 + 429 531 168955 93 0 1 8 chain 28548 chr6 171115067 + 127078112 127078502 THE1D-int 1627 - 1229 1612 90975 52 5 13 9 7 0 208 7 0 78 1 0 23 chain 3508 chr6 171115067 + 127114667 127114798 LTR16E2 555 - 0 128 215235 37 77 74 17 chain 30740 chr6 171115067 + 127119845 127120273 MER4A1 472 - 0 468 82970 128 8 10 29 6 7 37 5 41 190 0 1 25 chain 210433 chr6 171115067 + 127158319 127160872 L1PA7 6471 - 5 2930 18473 7 2 0 138 0 2 7 18 15 444 0 1 156 6 373 368 2 0 87 0 1 341 0 4 36 0 4 151 1 0 635 0 1 154 chain 88291 chr6 171115067 + 127160872 127161913 L1PA7 6471 + 2484 3537 40231 137 0 12 904 chain 31272 chr6 171115067 + 127169990 127170419 LTR7B 505 + 0 503 82038 105 0 10 69 6 68 28 0 2 36 0 1 46 1 0 23 0 1 52 14 13 49 chain 297409 chr6 171115067 + 127170421 127173922 HERVH-int 3825 + 0 3824 13558 489 0 57 24 1 0 10 1 0 24 28 0 15 0 37 41 1 0 59 0 1 7 0 2 12 0 3 902 7 33 299 0 10 1045 9 11 39 0 210 234 1 2 26 3 8 224 chain 30447 chr6 171115067 + 127175170 127175590 LTR7B 505 + 0 494 83536 105 0 10 69 6 68 28 0 2 36 0 1 46 1 0 23 0 1 52 14 13 40 chain 324122 chr6 171115067 + 127182667 127186474 L1PA5 6144 - 1 6141 12432 145 3 4 900 0 1 94 7 0 1279 19 20 18 1 0 377 0 1 44 0 2 88 1 0 293 0 1 55 13 445 358 1 1904 111 chain 117525 chr6 171115067 + 127203919 127205357 L1PA7 6471 - 5 1477 31954 126 0 1 349 0 3 161 0 3 195 8 7 178 0 1 347 0 22 9 1 6 64 chain 25521 chr6 171115067 + 127206051 127206349 AluSp 311 - 12 310 102134 298 chain 106804 chr6 171115067 + 127213107 127214704 THE1C-int 1605 + 0 1585 35032 12 20 25 285 5 11 21 11 12 40 39 46 54 1 0 21 6 5 121 8 0 11 0 7 7 15 16 65 8 2 58 0 1 113 0 1 97 0 1 4 1 0 254 1 0 52 5 6 18 10 0 26 24 7 140 16 18 28 chain 19967 chr6 171115067 + 127224039 127224265 AluYc 301 + 62 291 127244 57 0 3 169 chain 4939 chr6 171115067 + 127250301 127250363 MER5A1 166 + 5 73 195812 35 0 6 27 chain 19221 chr6 171115067 + 127290888 127291187 THE1C 375 - 15 375 129470 111 45 55 12 0 1 23 0 50 108 chain 28808 chr6 171115067 + 127300380 127300684 AluYb8 318 - 14 318 89855 304 chain 367108 chr6 171115067 + 127304801 127309810 L1PA7 6471 + 4 6470 11185 89 416 1880 18 1 2 30 2 19 94 0 1 154 0 1 34 5 0 194 0 2 13 7 6 7 0 1 549 0 1 317 0 1 59 0 1 26 0 1 117 0 4 383 0 1 316 0 1 107 0 1 136 2 1 7 0 1 30 0 1 345 5 4 18 0 1 353 0 1 527 9 10 89 3 4 146 41 2 360 chain 58271 chr6 171115067 + 127326477 127327155 L1PA7 6471 - 6 682 53826 7 1 0 327 1 0 342 chain 22867 chr6 171115067 + 127336137 127336427 AluY 311 + 0 292 116244 146 4 0 106 11 17 23 chain 514655 chr6 171115067 + 127364397 127370508 L1PA6 6164 + 0 6154 5707 1194 0 3 57 1 0 305 0 1 29 9 12 436 1 0 81 0 1 1064 1 2 4 0 1 530 5 7 381 1 12 1199 0 6 276 0 1 480 6 21 51 chain 5353 chr6 171115067 + 127374574 127374638 MLT1E3 631 + 520 584 191512 64 chain 39415 chr6 171115067 + 127376806 127377354 MLT2A2 560 - 0 559 70137 33 1 0 36 0 1 78 8 19 11 0 1 119 1 2 48 18 16 195 chain 61878 chr6 171115067 + 127389044 127389733 L1PA5 6144 + 5404 6093 51955 689 chain 4141 chr6 171115067 + 127389733 127389781 L1PA5 6144 + 6096 6144 205347 48 chain 18493 chr6 171115067 + 127412224 127412486 L1PA8 5853 - 0 256 131521 93 1 0 19 3 2 38 14 13 11 1 0 69 2 0 11 chain 124101 chr6 171115067 + 127488760 127490181 L1PA5 6144 - 3 1437 29667 396 1 9 359 1 0 15 0 1 32 0 1 133 1 5 483 chain 3535 chr6 171115067 + 127510203 127510248 MADE1 96 - 50 96 214782 29 0 1 16 chain 118522 chr6 171115067 + 127534911 127536299 LTR12C 1709 - 0 1709 31611 396 1 2 83 0 4 106 2 0 6 0 318 134 0 1 585 1 0 74 chain 505891 chr6 171115067 + 127549331 127555472 L1PA7 6471 + 0 6461 6473 48 4 1 425 1 0 107 0 2 88 0 47 9 65 18 1896 5 0 192 2 272 367 0 6 71 0 4 270 1 0 6 3 0 780 0 1 365 0 20 413 0 8 206 2 0 76 0 2 506 0 21 204 0 1 29 chain 133167 chr6 171115067 + 127558040 127559520 L1PA3long 6157 + 4677 6157 27395 1480 chain 505795 chr6 171115067 + 127576211 127582273 L1PA6 6164 + 0 6153 6479 250 1 2 42 12 13 158 1 0 322 0 17 124 0 4 164 7 6 342 0 16 216 0 1 35 1 0 330 1 0 292 2 0 262 0 19 649 0 3 433 6 9 36 0 1 124 1 0 495 0 4 365 1 2 35 10 28 198 1 0 60 0 1 109 0 5 386 0 1 137 0 2 294 1 2 159 chain 32860 chr6 171115067 + 127598609 127599017 MLT2A1 477 - 13 477 79438 37 0 44 58 0 5 147 1 5 25 0 1 54 0 2 86 chain 2694 chr6 171115067 + 127646611 127646646 L1MA10 1535 - 28 62 230280 4 1 0 30 chain 59828 chr6 171115067 + 127658111 127658850 MER4E 760 + 0 747 52916 262 0 1 5 1 0 101 0 2 8 0 4 51 1 0 66 0 2 27 2 0 138 0 3 77 chain 7501 chr6 171115067 + 127667170 127667325 L1MA6 2487 + 1925 2096 174144 7 0 14 57 1 0 32 33 0 12 0 36 13 chain 7196 chr6 171115067 + 127682312 127682528 THE1D-int 1627 + 0 217 79660 15 0 2 21 1 0 179 chain 33715 chr6 171115067 + 127682528 127683045 MER41C 542 - 0 518 78068 224 7 8 107 13 21 13 8 0 20 0 28 8 29 0 66 0 1 22 chain 7363 chr6 171115067 + 127683073 127683294 THE1D-int 1627 + 218 439 79660 221 chain 9742 chr6 171115067 + 127697759 127697880 MER41A 554 + 433 554 161882 121 chain 40304 chr6 171115067 + 127701693 127702220 LTR12C 1709 + 1190 1709 68874 13 0 1 20 11 4 313 1 0 81 4 3 84 chain 41670 chr6 171115067 + 127718458 127719044 LTR14B 630 + 48 630 67068 246 0 25 74 0 9 11 42 12 8 8 0 197 chain 504169 chr6 171115067 + 127727766 127734878 L1PA6 6164 - 12 6164 6586 141 7 8 362 4 1 1297 0 6 36 1 2 270 0 7 329 2 0 6 1 3 161 1 0 206 2 0 11 1 0 164 3 0 584 329 0 231 1 3 476 325 0 14 3 4 102 3 5 724 8 0 75 324 0 100 0 17 240 1 0 44 7 5 280 0 2 236 chain 72023 chr6 171115067 + 127749275 127750186 LTR12 884 - 0 884 47468 175 1 0 332 2 0 122 24 0 255 chain 6684 chr6 171115067 + 127752055 127752228 L1MD2 1676 + 827 993 179793 31 69 61 44 1 2 28 chain 24668 chr6 171115067 + 127754347 127754657 AluY 311 + 0 297 106621 56 1 0 70 12 0 171 chain 7178 chr6 171115067 + 127759771 127759912 Tigger3a 397 - 142 354 176222 72 8 22 18 19 68 13 0 8 11 chain 17114 chr6 171115067 + 127800291 127800496 MER41A 554 - 195 400 135270 205 chain 42293 chr6 171115067 + 127802876 127803405 MER41A 554 + 0 544 66278 96 0 1 108 5 16 137 0 3 16 0 1 160 1 0 6 chain 21341 chr6 171115067 + 127846632 127847005 THE1C 375 - 0 375 122717 26 1 0 41 10 8 12 6 5 16 57 63 14 1 0 12 0 1 177 chain 6350 chr6 171115067 + 127851926 127852003 MSTC 436 - 359 436 182370 77 chain 11768 chr6 171115067 + 127852715 127852893 L1PA8 5853 + 5688 5853 153180 52 2 1 21 1 0 84 11 0 7 chain 2833 chr6 171115067 + 127860440 127860472 MIR 256 - 128 160 228168 32 chain 37911 chr6 171115067 + 127884490 127884930 L1PA6 6164 - 5 444 72269 177 1 0 262 chain 17352 chr6 171115067 + 127893169 127893386 L1PA7 6471 - 2 216 134654 36 3 0 178 chain 4678 chr6 171115067 + 127914291 127914346 MER61B 427 - 334 389 198781 55 chain 547503 chr6 171115067 + 127914437 127920437 L1PA2 6032 + 12 6022 1767 730 1 0 86 0 4 288 7 9 2014 0 2 408 0 2 580 0 1 1886 chain 5639 chr6 171115067 + 127923243 127923321 MER61B 427 - 350 427 188672 43 5 4 30 chain 4082 chr6 171115067 + 127930492 127930631 MER58A 224 - 9 172 206175 37 78 102 24 chain 63000 chr6 171115067 + 127938080 127938760 L1HS 6032 - 922 1602 51128 680 chain 86357 chr6 171115067 + 127938760 127939691 L1HS 6032 + 5098 6029 41015 931 chain 21496 chr6 171115067 + 127956723 127956988 L1PA7 6471 - 3 264 122159 7 4 0 254 chain 41651 chr6 171115067 + 127963922 127964500 LTR19B 566 - 2 566 67089 28 12 14 65 5 7 9 0 4 64 9 0 51 1 3 300 16 1 18 chain 23789 chr6 171115067 + 127969433 127969766 THE1C 375 + 0 329 111540 108 2 1 70 22 19 131 chain 10434 chr6 171115067 + 127981724 127981850 L1PA6 6164 + 5631 5757 158551 126 chain 29778 chr6 171115067 + 127981860 127982242 L1PA6 6164 + 5779 6161 85546 237 8 7 10 0 1 127 chain 495923 chr6 171115067 + 127988581 127994185 L1PA4 6152 - 9 6149 7075 861 0 4 917 0 2 1182 1 0 486 0 3 984 1 0 126 0 3 232 0 1 178 0 3 508 4 1 29 0 525 95 chain 12583 chr6 171115067 + 128000807 128000965 L1PA7 6471 + 6310 6465 149911 148 3 0 7 chain 51441 chr6 171115067 + 128009414 128010269 L1PA14 3548 - 92 924 58012 42 1 0 18 1 0 9 1 0 8 4 2 36 14 9 26 18 19 66 1 0 63 28 27 21 4 0 86 0 1 18 2 0 4 2 0 59 12 4 98 11 12 50 0 2 9 0 1 78 1 0 64 chain 19827 chr6 171115067 + 128023793 128024117 THE1B 368 - 0 366 127726 125 35 45 23 4 3 78 4 22 17 0 15 38 chain 29096 chr6 171115067 + 128024181 128024490 AluYa5 310 - 0 309 88571 309 chain 28774 chr6 171115067 + 128028040 128028413 THE1C 375 - 0 375 90003 25 1 0 144 0 3 16 3 4 19 1 0 164 chain 106038 chr6 171115067 + 128090788 128092066 L1PA6 6164 - 11 1300 35247 136 18 25 684 1 0 140 0 5 299 chain 61281 chr6 171115067 + 128092068 128092784 L1PA6 6164 + 4154 4879 52215 168 1 3 42 0 4 95 0 3 410 chain 135968 chr6 171115067 + 128103906 128105540 L1PA7 6471 + 4832 6469 26842 719 0 4 138 2 1 653 0 1 109 2 1 11 chain 8751 chr6 171115067 + 128106527 128106620 L1PA4 6152 + 6058 6151 166914 93 chain 70872 chr6 171115067 + 128109990 128110857 L1P3 4156 + 3270 4139 47975 301 0 5 531 2 0 7 2 1 24 chain 27585 chr6 171115067 + 128121677 128122066 MLT2A1 477 + 5 477 94397 158 11 9 11 0 1 18 0 1 93 4 5 50 7 89 37 chain 155978 chr6 171115067 + 128122066 128124006 HERVL-int 5654 + 0 1929 23860 28 6 0 119 0 2 63 0 1 72 21 0 54 4 13 64 0 11 221 8 0 766 0 1 89 0 1 215 2 1 208 chain 133906 chr6 171115067 + 128169080 128170587 L1PA4 6152 - 16 1517 27237 140 1 0 18 4 0 86 1 0 1257 chain 4075 chr6 171115067 + 128170587 128170630 L1PA4 6152 + 4584 4627 206261 43 chain 4241 chr6 171115067 + 128173009 128173068 MER47B 469 - 118 172 204003 47 5 0 7 chain 3615 chr6 171115067 + 128178818 128178892 MER5A1 166 + 41 127 213423 23 6 19 23 7 6 15 chain 533017 chr6 171115067 + 128247352 128253484 L1PA5 6144 + 0 6139 3849 36 2 0 485 3 0 6 0 4 279 0 1 408 1 0 280 0 1 495 16 9 708 0 1 159 15 5 293 1 0 344 0 22 1115 14 14 361 0 1 969 0 1 142 chain 32125 chr6 171115067 + 128288123 128288549 MLT2A1 477 + 2 477 80649 70 0 4 66 0 1 26 1 5 141 1 2 6 1 0 61 0 40 53 chain 9471 chr6 171115067 + 128399628 128399940 MER44A 345 + 36 345 163213 17 24 10 46 29 49 26 1 0 5 3 0 45 96 91 20 chain 12297 chr6 171115067 + 128416534 128416730 MER107 203 - 0 201 151023 16 8 14 16 0 2 87 5 6 36 13 9 15 chain 14653 chr6 171115067 + 128447217 128447445 L1PA8 5853 - 9 240 142413 84 1 0 19 2 1 32 1 0 4 0 1 8 8 7 9 4 3 43 1 8 12 chain 15584 chr6 171115067 + 128470264 128470452 L1PA5 6144 + 5937 6138 139631 74 0 13 114 chain 22067 chr6 171115067 + 128479295 128479556 L1PA5 6144 + 5874 6135 119932 261 chain 6671 chr6 171115067 + 128512435 128512524 L1MA7 2200 + 1890 1977 179892 58 3 1 28 chain 8342 chr6 171115067 + 128518354 128518481 L1PA8 5853 - 1 127 169162 14 1 2 75 2 1 19 2 1 14 chain 17918 chr6 171115067 + 128519555 128519775 L1PA7 6471 + 6248 6467 133062 61 1 0 158 chain 149643 chr6 171115067 + 128523874 128525909 L1PA11 4918 + 2495 4507 24668 49 1 0 142 2 1 29 1 0 201 20 1 79 27 34 23 10 1 276 0 4 201 1 2 122 1 0 241 0 1 124 0 1 152 0 5 143 1 0 62 6 5 12 5 0 68 3 1 12 2 1 19 chain 19828 chr6 171115067 + 128549033 128549273 L1PA7 6471 + 6230 6470 127719 240 chain 2439 chr6 171115067 + 128556097 128556139 L1MA4 2864 + 2749 2792 233879 18 5 6 19 chain 99694 chr6 171115067 + 128593204 128594342 L1PA5 6144 + 4834 5977 36856 1031 1 6 106 chain 14372 chr6 171115067 + 128594347 128594514 L1PA5 6144 + 5977 6144 143294 167 chain 12143 chr6 171115067 + 128614327 128614495 MLT1A1 405 - 16 190 151639 37 4 10 63 1 0 54 0 1 9 chain 408457 chr6 171115067 + 128617470 128622017 L1PA3long 6157 + 1593 6157 9845 1726 5 0 99 0 2 277 0 10 894 1 0 782 0 1 411 0 12 345 2 0 5 chain 84178 chr6 171115067 + 128646416 128647451 L1PA7 6471 + 5407 6457 41833 214 0 3 77 1 2 138 0 1 445 0 3 17 9 16 134 chain 15224 chr6 171115067 + 128676771 128676943 L1PA4 6152 + 5971 6143 140701 172 chain 3143 chr6 171115067 + 128705592 128705626 MER30 238 - 0 34 222101 34 chain 21085 chr6 171115067 + 128730780 128731105 THE1B 368 + 0 368 123599 44 0 15 69 10 38 10 2 1 19 22 23 149 chain 8556 chr6 171115067 + 128746527 128746699 L1PB1 5432 - 106 264 167982 18 16 6 6 1 0 11 4 3 45 19 17 52 chain 24338 chr6 171115067 + 128851355 128851656 AluY 311 + 0 290 108430 126 6 0 81 1 0 22 6 2 59 chain 5847 chr6 171115067 + 128877633 128877709 MADE1 96 + 2 95 186711 28 0 17 48 chain 6993 chr6 171115067 + 128905548 128905634 HY3 101 + 14 100 177518 86 chain 277531 chr6 171115067 + 128909518 128913529 L1MA1 4479 + 228 4190 14772 14 1 0 37 2 0 26 4 9 46 1 0 145 0 1 6 0 3 69 1 3 156 14 10 31 4 0 336 0 3 51 1 5 53 2 0 7 1 3 130 2 0 31 6 9 30 1 0 235 0 2 288 0 1 123 1 0 84 1 0 304 0 3 23 9 0 45 12 11 42 2 0 64 2 1 103 2 0 8 0 1 24 1 0 62 5 0 92 1 0 27 2 0 130 0 1 42 2 0 19 4 0 58 2 3 13 1 0 14 4 0 71 1 6 46 3 0 5 0 1 124 2 0 197 1 0 24 2 0 5 17 16 41 26 25 14 2 0 22 1 0 84 1 0 6 3 0 126 2 1 21 9 7 35 1 0 9 1 0 4 4 1 16 8 0 18 chain 30369 chr6 171115067 + 128944124 128944645 L1PB 1623 + 1094 1574 83741 4 1 0 147 3 2 38 0 1 23 10 0 137 1 0 7 2 1 26 11 8 14 1 0 13 1 0 9 54 31 19 chain 3490 chr6 171115067 + 128946894 128947011 MER5B 177 - 24 88 215506 37 1 8 10 60 0 9 chain 70789 chr6 171115067 + 128974757 128975555 L1PA3long 6157 - 0 799 48020 11 1 0 135 0 2 619 1 0 6 0 1 25 chain 6174 chr6 171115067 + 128982103 128982178 MER30 238 + 28 104 183778 71 0 1 4 chain 63072 chr6 171115067 + 128982180 128982967 L1PA8A 6298 + 5293 6287 51418 70 0 1 64 0 1 31 0 206 176 13 12 300 0 1 34 1 0 98 chain 8291 chr6 171115067 + 128983013 128983114 MER30B 195 + 80 181 169459 101 chain 30344 chr6 171115067 + 128989831 128990149 AluYb8 318 + 0 318 83792 318 chain 51425 chr6 171115067 + 129000000 129000569 L1PA4 6152 + 5571 6140 58021 569 chain 33191 chr6 171115067 + 129001851 129002614 L1PB1 5432 - 2 712 78903 4 1 0 4 1 0 18 8 7 4 1 0 23 1 0 24 2 0 14 1 0 5 84 83 7 1 0 16 2 1 42 28 22 12 3 2 4 1 0 24 72 21 119 0 17 89 2 3 57 11 11 10 1 0 32 1 2 4 1 0 29 chain 44760 chr6 171115067 + 129067250 129067732 LTR7 482 - 0 482 63320 482 chain 20069 chr6 171115067 + 129076621 129076849 L1PA4 6152 + 5923 6151 126921 228 chain 25143 chr6 171115067 + 129081411 129081754 THE1A 353 + 0 341 104044 106 16 14 82 1 0 25 3 4 110 chain 5692 chr6 171115067 + 129082879 129082949 HY3 101 - 26 97 188181 13 0 1 57 chain 26826 chr6 171115067 + 129085067 129085427 THE1B 368 - 0 368 96889 75 1 0 94 5 1 26 2 0 117 0 15 40 chain 512897 chr6 171115067 + 129095303 129101485 L1PA6 6164 - 27 6125 5890 1200 93 12 282 4 0 98 1 2 893 0 1 323 0 1 56 13 29 50 0 1 633 1 0 308 0 23 409 0 1 634 45 1 35 0 1 119 3 0 115 0 4 867 chain 5644 chr6 171115067 + 129096519 129096581 L1PA6 6164 - 2545 2607 188617 62 chain 155790 chr6 171115067 + 129106777 129108638 L1PA7 6471 - 7 1863 23881 6 3 0 778 0 1 19 2 0 34 6 5 94 2 0 229 0 1 348 1 0 261 0 2 78 chain 3525 chr6 171115067 + 129114163 129114204 L1PA13 3608 - 690 732 214972 20 0 1 21 chain 230312 chr6 171115067 + 129130797 129134109 L1PB2 3958 - 122 3332 17291 49 0 1 10 2 1 90 13 9 31 7 8 5 1 0 15 1 0 20 1 5 52 1 0 89 3 0 12 2 0 58 5 4 16 1 0 54 2 0 15 0 14 169 1 0 153 0 1 31 2 0 48 0 12 147 0 1 55 0 1 176 3 1 156 181 39 304 0 1 62 6 32 125 33 26 144 1 0 343 0 3 47 0 1 6 0 1 6 2 1 188 0 1 232 6 9 130 chain 536887 chr6 171115067 + 129150613 129156767 L1PA5 6144 + 0 6144 3327 112 10 8 260 0 1 44 9 7 613 0 1 1000 6 7 1550 0 1 1389 0 1 255 25 14 881 chain 21201 chr6 171115067 + 129189615 129189840 AluYb8 318 + 93 318 123212 225 chain 8864 chr6 171115067 + 129199899 129200217 L1MC1 2226 + 1888 2185 166307 29 2 7 34 9 10 12 3 0 11 3 1 55 143 121 17 chain 545712 chr6 171115067 + 129226786 129232807 L1PA3long 6157 - 5 6157 1989 1790 0 2 3456 9 137 614 0 1 152 chain 158784 chr6 171115067 + 129242854 129244601 L1PA3long 6157 - 0 1747 23488 1747 chain 38755 chr6 171115067 + 129256219 129256717 L1PA6 6164 - 8 505 71070 153 14 12 164 9 10 158 chain 23606 chr6 171115067 + 129281473 129281804 AluSq10 312 - 4 312 112549 13 2 0 111 30 9 175 chain 31807 chr6 171115067 + 129282556 129282953 MLT2A1 477 - 74 477 81158 16 1 0 196 0 1 16 1 5 26 0 1 125 1 2 15 chain 71969 chr6 171115067 + 129303755 129304559 L1PA3long 6157 - 0 800 47486 7 0 1 69 0 1 74 5 0 181 1 0 467 chain 81266 chr6 171115067 + 129317462 129318427 L1PA7 6471 + 5496 6458 43060 18 0 1 104 1 5 646 4 0 41 4 0 147 chain 567677 chr6 171115067 + 129319530 129325561 L1HS 6032 + 0 6032 50 74 0 1 5957 chain 24952 chr6 171115067 + 129334308 129334594 AluYk4 311 + 10 294 105046 122 2 0 162 chain 29074 chr6 171115067 + 129387183 129387489 AluYa5 310 - 4 310 88664 306 chain 8491 chr6 171115067 + 129400345 129400471 MER44A 345 + 96 229 168345 23 2 0 23 0 8 6 0 1 13 0 1 20 1 0 38 chain 75577 chr6 171115067 + 129401677 129402547 L1PA5 6144 + 5274 6143 45730 13 1 0 856 chain 102374 chr6 171115067 + 129409051 129410267 SVA_C 1631 - 12 1389 36172 567 9 97 96 5 2 113 1 78 24 4 1 29 2 4 366 chain 549323 chr6 171115067 + 129488305 129494343 L1PA2 6032 - 0 6032 1535 624 2 0 1182 0 4 1756 11 0 1852 0 2 168 0 1 187 1 0 183 0 1 72 chain 21368 chr6 171115067 + 129496735 129496996 L1PA7 6471 + 6209 6470 122623 261 chain 3129 chr6 171115067 + 129508801 129509017 Tigger4a 237 + 32 141 222390 11 90 0 14 69 52 32 chain 72930 chr6 171115067 + 129540318 129541124 L1PA3long 6157 + 5343 6157 47053 665 1 0 24 0 9 116 chain 535268 chr6 171115067 + 129543494 129549597 L1PA5 6144 - 0 6125 3556 11 3 8 816 0 1 686 2 0 750 0 12 178 0 1 1552 0 3 619 0 1 521 0 3 503 9 7 453 chain 19193 chr6 171115067 + 129558521 129558752 AluSg7 307 - 49 281 129548 126 0 1 105 chain 18964 chr6 171115067 + 129586794 129587014 L1PA7 6471 + 6244 6464 130195 220 chain 26560 chr6 171115067 + 129635263 129635564 AluYk4 311 + 0 302 97807 131 0 1 170 chain 8292 chr6 171115067 + 129641342 129641524 Tigger2a 444 - 263 443 169454 39 67 65 76 chain 21711 chr6 171115067 + 129650951 129651318 MER1A 529 + 37 391 121345 39 76 67 103 0 3 19 7 0 123 chain 7707 chr6 171115067 + 129708314 129708407 L1PA8 5853 - 0 93 172890 93 chain 49909 chr6 171115067 + 129708411 129709495 L1PA8 5853 + 5054 5812 59083 39 0 1 294 5 6 24 1 5 138 14 11 38 2 0 46 1 3 19 37 35 27 2 1 4 1 0 15 325 0 52 chain 22563 chr6 171115067 + 129718805 129719108 AluY 311 + 27 309 117747 91 17 0 12 7 0 36 0 3 140 chain 41853 chr6 171115067 + 129727870 129728416 MLT2A2 560 - 0 560 66823 9 0 4 133 3 14 217 1 0 183 chain 204091 chr6 171115067 + 129728416 129731015 HERVL-int 5654 - 0 2629 18917 225 5 6 71 1 3 199 11 1 145 0 1 52 0 1 138 0 1 476 0 1 144 0 16 81 0 1 295 0 1 567 9 6 138 0 18 42 chain 5842 chr6 171115067 + 129731023 129731091 MLT2A2 560 - 492 560 186754 68 chain 27272 chr6 171115067 + 129737090 129737384 AluYa5 310 - 8 310 95367 176 1 0 76 0 9 41 chain 5669 chr6 171115067 + 129779892 129779958 Tigger3c 601 + 451 517 188405 66 chain 7411 chr6 171115067 + 129823041 129823133 MER45A 178 - 17 108 174699 23 1 0 68 chain 30005 chr6 171115067 + 129831185 129831572 L1MA3 4352 + 2151 2549 84791 116 0 8 38 7 6 47 0 4 179 chain 114690 chr6 171115067 + 129839218 129840501 L1PA3long 6157 + 4870 6157 32885 440 0 4 498 0 4 216 4 0 125 chain 24957 chr6 171115067 + 129848451 129848749 AluSp 311 - 4 301 105019 175 1 0 122 chain 3485 chr6 171115067 + 129854590 129854664 MER51A 677 + 178 232 215595 15 26 6 33 chain 158163 chr6 171115067 + 129879714 129881472 L1PA4 6152 + 4392 6151 23568 605 0 1 1153 chain 529169 chr6 171115067 + 129889825 129896260 L1PA7 6471 + 0 6470 4278 130 0 1 282 2 1 382 1 17 437 3 0 294 1 2 213 1 0 56 7 0 172 3 4 43 0 1 265 0 12 36 0 1 283 13 0 41 25 30 186 0 4 124 0 3 400 1 0 82 0 1 19 5 1 56 0 5 443 0 1 396 0 1 803 0 4 78 0 2 308 1 4 74 0 2 142 3 4 624 chain 24429 chr6 171115067 + 129908973 129909259 THE1C-int 1605 - 20 306 107925 286 chain 25907 chr6 171115067 + 129998255 129998552 AluYk4 311 + 0 296 100398 75 1 0 221 chain 5821 chr6 171115067 + 130057480 130057560 MLT2A1 477 + 7 476 186939 26 0 389 54 chain 6159 chr6 171115067 + 130066192 130066269 MADE1 96 + 0 96 183909 30 0 19 47 chain 6531 chr6 171115067 + 130068882 130068959 MADE1 96 + 0 93 180998 29 0 16 48 chain 4402 chr6 171115067 + 130079098 130079151 MER45A 178 - 67 120 201906 53 chain 7691 chr6 171115067 + 130097830 130098008 MLT2D 439 - 250 439 172984 41 15 14 15 3 0 29 40 55 35 chain 27484 chr6 171115067 + 130117910 130118287 THE1D 372 - 0 372 94698 79 3 4 96 0 3 133 10 1 31 1 0 4 0 1 20 chain 118085 chr6 171115067 + 130123755 130125319 THE1B-int 1605 + 5 1600 31778 20 0 3 6 3 0 292 0 6 91 3 28 210 3 35 8 31 0 536 0 1 102 0 1 226 4 1 29 chain 398165 chr6 171115067 + 130128194 130132895 L1PA6 6164 - 5 4742 10166 21 0 1 129 20 16 668 8 10 50 0 2 65 0 10 905 3 15 744 1 0 937 0 4 165 4 0 198 1 3 326 1 0 114 2 15 339 chain 506888 chr6 171115067 + 130156579 130162726 L1PA6 6164 + 0 6162 6408 428 0 1 20 8 0 117 4 3 22 0 1 195 0 17 372 8 4 360 2 3 102 0 1 686 2 6 470 13 0 277 3 6 92 1 2 55 0 4 380 0 1 1387 0 1 249 0 2 50 1 5 412 0 1 222 0 2 67 1 2 131 4 0 6 chain 4971 chr6 171115067 + 130192791 130192852 MLT1B 390 - 205 266 195459 61 chain 413415 chr6 171115067 + 130198487 130204028 L1PA8A 6298 - 7 5384 9714 17 0 1 68 6 1 7 0 5 627 7 11 61 1 4 69 0 1 97 0 1 139 0 5 370 1 3 188 0 1 201 6 13 216 1 11 66 0 1 140 294 20 75 0 1 472 3 2 31 1 0 764 0 1 5 1 0 86 21 0 127 7 81 84 0 1 34 4 21 94 1 0 164 2 1 115 0 1 649 0 3 14 3 0 15 0 4 18 9 10 160 chain 14160 chr6 171115067 + 130206739 130206907 L1PA6 6164 + 5994 6162 144010 168 chain 22381 chr6 171115067 + 130233157 130233522 THE1D 372 - 0 372 118583 96 0 1 36 73 79 160 chain 7629 chr6 171115067 + 130272810 130272901 MER44A 345 - 108 199 173361 91 chain 3243 chr6 171115067 + 130280293 130280328 MER52D 1964 + 1116 1151 220171 35 chain 12020 chr6 171115067 + 130308650 130308813 MER30 238 - 2 192 152120 32 4 3 73 0 28 54 chain 64318 chr6 171115067 + 130410222 130410978 L1PA6 6164 - 8 765 50876 615 3 4 138 chain 9349 chr6 171115067 + 130426675 130426784 AluJb 308 + 191 300 163805 109 chain 178146 chr6 171115067 + 130429845 130432026 L1PA8 5853 - 0 2186 21151 92 10 9 11 2 1 53 3 0 8 2 1 67 3 1 46 1 0 496 0 1 57 2 0 275 1 10 388 1 0 124 5 10 294 0 2 240 chain 41882 chr6 171115067 + 130438123 130438570 L1PA2 6032 - 7 454 66785 447 chain 3115 chr6 171115067 + 130443707 130443742 MIR 256 + 201 236 222642 35 chain 35621 chr6 171115067 + 130452662 130453193 MER41A 554 - 0 554 75384 5 1 0 10 6 7 46 34 30 28 0 1 16 0 23 169 0 13 132 10 0 74 chain 17093 chr6 171115067 + 130470404 130470712 L1PA15 4387 + 4047 4351 135337 57 1 0 25 2 1 53 16 22 12 1 0 39 17 14 19 0 3 22 3 1 12 6 1 23 chain 3326 chr6 171115067 + 130480960 130480999 L1ME3F 937 + 311 350 218467 39 chain 308133 chr6 171115067 + 130491196 130495075 L1PA8 5853 - 6 5745 13080 42 0 1 43 2 1 16 1 0 65 1 0 32 0 2 37 4 0 44 1 0 114 0 1 28 12 1111 126 0 1 122 0 4 102 0 1 250 0 3 304 0 727 80 0 1 100 0 4 460 1 0 255 7 11 385 0 1 327 0 10 177 22 34 132 0 6 87 2 6 286 18 6 194 chain 314341 chr6 171115067 + 130513857 130517710 HERVH-int 3825 + 0 3825 12833 530 1 0 11 1 0 4 0 1 24 2 1 9 1 0 10 4 0 13 7 1 14 1 0 12 27 1 24 23 1 42 2 1 80 1 0 60 2 5 392 15 0 195 9 0 44 1 0 210 4 31 370 8 13 485 4 6 495 0 19 245 0 3 246 0 2 225 chain 28235 chr6 171115067 + 130518964 130519367 LTR7 482 + 0 482 92173 69 8 46 109 0 1 29 2 0 9 1 32 12 1 0 5 1 12 41 1 2 115 chain 20316 chr6 171115067 + 130521423 130521723 AluSc8 310 + 19 305 126188 115 6 1 128 29 20 22 chain 11453 chr6 171115067 + 130532280 130532421 MER4B 649 + 234 390 154489 110 0 15 31 chain 20536 chr6 171115067 + 130540492 130540927 L1PB1 5432 - 2 405 125525 10 2 0 16 1 0 12 1 0 22 1 0 23 61 45 22 1 0 44 6 5 10 2 1 53 2 0 9 5 1 11 1 0 12 1 0 17 14 14 76 chain 3830 chr6 171115067 + 130553146 130553200 MER3 215 + 130 190 209928 39 1 7 14 chain 8453 chr6 171115067 + 130554404 130554503 L1PA7 6471 - 7 106 168548 99 chain 399405 chr6 171115067 + 130583735 130588648 Harlequin-int 5206 + 289 5206 10122 11 0 2 5 2 0 108 14 13 49 14 6 43 0 1 20 5 7 163 0 2 292 1 0 169 0 1 108 12 11 102 0 10 161 0 1 4 1 0 471 0 2 924 0 1 700 2 0 12 1 2 421 2 1 732 5 6 329 6 3 24 chain 19958 chr6 171115067 + 130592816 130593172 THE1B 368 - 0 368 127277 37 1 2 70 34 32 13 1 5 9 0 5 20 7 6 99 17 23 43 1 0 4 chain 3097 chr6 171115067 + 130594595 130594633 L1M1 2793 - 370 408 222962 38 chain 4375 chr6 171115067 + 130609467 130609607 MLT2D 439 - 208 350 202255 17 26 27 13 39 40 45 chain 35244 chr6 171115067 + 130621976 130622401 L1PA6 6164 - 8 434 75866 149 8 9 268 chain 48561 chr6 171115067 + 130650604 130651227 L1PA8 5853 + 5238 5853 60071 326 2 1 43 2 0 70 2 1 8 2 1 52 2 1 19 5 4 84 1 0 5 chain 50449 chr6 171115067 + 130656762 130657316 L1PA3long 6157 + 5600 6154 58680 554 chain 535826 chr6 171115067 + 130667236 130673363 L1PA4 6152 + 6 6146 3472 451 8 0 279 1 0 361 1 4 2216 0 1 89 2 10 265 1 0 952 0 1 65 6 2 878 0 14 552 chain 85769 chr6 171115067 + 130681465 130682515 MER11C 1089 - 30 1089 41237 169 0 1 151 0 1 45 0 4 191 1 2 110 1 0 68 0 4 63 0 1 155 1 0 70 2 1 23 chain 35678 chr6 171115067 + 130720859 130721544 L1PB1 5432 - 19 605 75296 9 1 0 13 1 0 11 2 0 10 1 0 24 57 43 7 3 0 15 1 0 44 1 0 16 2 1 51 2 0 11 19 14 6 1 0 24 1 0 11 65 0 50 16 16 210 chain 27183 chr6 171115067 + 130726190 130726575 L1PA13 3608 - 131 499 95654 9 1 0 20 2 0 5 7 0 49 2 0 58 1 0 63 2 0 39 0 1 73 1 0 27 3 1 23 chain 9925 chr6 171115067 + 130740482 130740647 L1MA4A 3247 - 77 235 160950 22 23 17 24 1 0 95 chain 537750 chr6 171115067 + 130796660 130802812 L1PA4 6152 + 3 6151 3194 454 0 1 118 1 0 122 7 0 331 2 1 72 0 3 108 0 1 964 1 0 2067 1 0 712 0 1 848 0 1 344 chain 15637 chr6 171115067 + 130803156 130803427 L1PA15 4387 + 4112 4366 139473 18 1 0 55 1 0 22 4 0 10 1 0 50 6 3 46 2 0 7 10 6 26 1 0 11 chain 72290 chr6 171115067 + 130808666 130809465 L1PA4 6152 + 5341 6151 47338 755 0 11 44 chain 24753 chr6 171115067 + 130809628 130809946 L1PA7 6471 - 3 334 106152 233 16 29 69 chain 119222 chr6 171115067 + 130812380 130813905 L1PA11 4918 - 443 1977 31325 68 2 0 7 9 8 66 1 0 109 0 3 246 44 53 380 0 1 593 chain 79085 chr6 171115067 + 130824663 130825764 L1MA2 4263 + 2472 3584 44013 129 0 2 41 6 3 4 0 1 123 3 2 53 0 1 71 0 3 51 14 15 147 1 3 17 11 17 116 1 2 194 0 5 66 6 0 29 1 0 17 chain 28323 chr6 171115067 + 130825767 130826067 AluYa5 310 - 10 310 91856 300 chain 24157 chr6 171115067 + 130828157 130828466 L1PA8 5853 - 0 302 109444 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 13 chain 17209 chr6 171115067 + 130829917 130830123 L1PA5 6144 - 4 206 135013 9 5 0 16 0 1 176 chain 21802 chr6 171115067 + 130842763 130843023 AluY 311 + 36 298 121009 96 0 1 36 0 1 128 chain 17787 chr6 171115067 + 130851406 130851620 L1PBa 3878 + 2253 2467 133458 214 chain 395738 chr6 171115067 + 130861492 130865903 L1PA4 6152 + 1745 6152 10251 2611 0 4 403 0 1 129 7 0 64 0 1 1189 3 0 5 chain 11875 chr6 171115067 + 130882991 130883348 L1MC1 2226 - 42 365 152721 26 148 124 7 0 2 32 2 0 13 3 0 66 1 0 26 7 1 26 chain 222527 chr6 171115067 + 130891035 130893711 L1PA7 6471 + 3755 6457 17729 58 0 4 19 1 0 746 0 3 346 0 4 260 9 13 111 0 1 302 2 0 17 14 10 183 0 17 608 chain 50512 chr6 171115067 + 130939846 130940484 PABL_B 668 + 0 651 58641 350 5 4 124 14 28 145 chain 2961 chr6 171115067 + 130950184 130950219 MADE1 96 - 60 96 225867 5 0 1 30 chain 33057 chr6 171115067 + 130951939 130952387 MLT2A1 477 + 0 477 79125 170 4 1 8 0 1 24 0 1 128 4 0 52 4 0 11 10 44 27 0 4 6 chain 311456 chr6 171115067 + 130957304 130961608 L1PA8 5853 + 1899 5853 12947 126 0 1 81 5 6 542 6 8 119 21 0 19 0 1 68 2 1 15 1 0 96 0 1 121 16 6 104 6 0 130 3 4 242 5 6 310 2 0 42 329 9 62 0 1 81 0 2 237 1 0 284 0 1 184 0 1 36 0 1 158 1 4 49 0 1 20 1 2 481 1 0 46 2 0 70 13 11 51 22 20 93 chain 84928 chr6 171115067 + 130965630 130966680 MER11B 1079 - 5 1079 41543 6 1 0 150 6 7 137 2 4 436 1 18 86 0 5 225 chain 22412 chr6 171115067 + 131006099 131006357 AluSp 311 + 29 287 118427 258 chain 23880 chr6 171115067 + 131016138 131016504 THE1D 372 + 0 372 111029 68 0 1 34 4 5 54 0 1 6 15 18 7 2 0 16 13 14 19 0 1 128 chain 526541 chr6 171115067 + 131022460 131028903 L1PA7 6471 + 1 6462 4540 4 1 0 397 5 0 384 3 0 5 0 3 25 1 0 4 0 1 75 1 2 152 11 0 7 0 11 9 0 3 140 0 1 76 0 1 259 0 1 36 0 3 330 0 1 764 0 1 278 0 1 121 0 4 390 6 7 462 3 4 84 0 1 720 1 0 262 0 1 590 5 8 655 0 1 177 chain 2721 chr6 171115067 + 131029341 131029376 L1MA9 1812 + 1184 1218 229869 4 1 0 30 chain 36131 chr6 171115067 + 131032988 131033428 LTR7 482 + 0 473 74726 261 0 31 127 12 14 40 chain 18061 chr6 171115067 + 131033440 131033719 Tigger3a 397 - 70 396 132695 81 4 0 108 11 16 9 0 42 5 3 0 6 0 7 52 chain 23134 chr6 171115067 + 131039342 131039689 L1PA11 4918 + 4172 4504 114978 12 0 5 124 5 6 18 8 0 56 2 1 13 9 0 67 2 0 15 1 0 15 chain 3625 chr6 171115067 + 131048961 131049000 L1P3 4156 + 1 40 213237 39 chain 52339 chr6 171115067 + 131049003 131049643 L1PA7 6471 + 4125 4768 57406 258 0 1 98 1 0 4 1 2 9 0 1 157 0 1 112 chain 19779 chr6 171115067 + 131049644 131049900 L1PA7 6471 + 4768 5019 127873 115 6 1 32 0 1 38 1 0 64 chain 50883 chr6 171115067 + 131049908 131050506 L1PA7 6471 + 5024 5621 58378 332 1 0 265 chain 70816 chr6 171115067 + 131050507 131051337 L1PA7 6471 + 5621 6456 48007 24 0 1 18 0 1 38 0 1 432 0 1 176 7 8 135 chain 8579 chr6 171115067 + 131059772 131059957 L1MA8 2339 + 1934 2117 167848 22 2 0 18 5 6 27 1 2 57 39 37 14 chain 26344 chr6 171115067 + 131083019 131083360 THE1B 368 - 15 368 98641 161 4 2 21 1 0 110 0 15 44 chain 25339 chr6 171115067 + 131088449 131088735 AluYc 301 - 16 301 103029 171 1 0 114 chain 44101 chr6 171115067 + 131094627 131095173 MLT2A2 560 + 4 560 64086 179 1 0 223 0 11 143 chain 21630 chr6 171115067 + 131105398 131105741 THE1D 372 + 0 357 121658 140 41 54 12 18 20 114 1 0 17 chain 31866 chr6 171115067 + 131116983 131117425 LTR7 482 - 5 482 81069 153 0 10 44 14 45 110 21 15 100 chain 6630 chr6 171115067 + 131118291 131118368 MER66D 528 - 91 168 180240 77 chain 134126 chr6 171115067 + 131122970 131124466 SVA_D 2077 + 222 2077 27178 503 0 3 33 3 0 126 0 310 155 0 49 676 chain 409096 chr6 171115067 + 131138178 131143879 L1PB1 5432 + 77 5420 9831 379 4 3 17 0 1 75 4 2 170 1 0 4 1 2 240 2 3 103 1 0 171 0 4 152 10 0 142 0 4 43 0 11 419 5 7 186 0 3 145 0 1 406 0 1 25 0 7 33 6 0 6 2 0 153 0 4 733 2 0 434 14 8 179 0 2 258 302 19 54 32 0 19 0 2 105 5 4 148 5 0 86 3 4 49 27 11 24 1 0 9 1 0 11 9 13 49 2 1 15 1 0 18 44 26 16 3 0 6 16 6 16 16 13 9 2 0 24 1 0 22 0 3 9 1 0 16 chain 39921 chr6 171115067 + 131151711 131152239 MER41A 554 + 19 552 69432 156 0 1 9 11 7 69 0 3 71 12 10 124 0 5 39 0 2 37 chain 19597 chr6 171115067 + 131230666 131230886 L1PA7 6471 + 4449 4669 128391 220 chain 151231 chr6 171115067 + 131230886 131232673 L1PA7 6471 + 4677 6466 24443 620 1 2 39 0 1 282 5 8 175 1 0 415 10 16 130 2 0 90 6 0 11 chain 58367 chr6 171115067 + 131263745 131264442 L1PA7 6471 - 5 705 53766 7 2 0 10 1 0 129 11 12 105 0 5 432 chain 2682 chr6 171115067 + 131272914 131273133 MLT1I 406 + 113 332 230422 19 173 173 27 chain 19579 chr6 171115067 + 131274574 131274814 L1PA5 6144 + 5901 6143 128434 229 1 3 10 chain 26801 chr6 171115067 + 131294661 131295007 MER4A1 472 + 0 376 96982 89 3 0 137 20 53 97 chain 6632 chr6 171115067 + 131314940 131315029 HERVH48-int 3304 - 1333 1420 180231 23 2 1 7 1 0 56 chain 30186 chr6 171115067 + 131315851 131316806 MER4A1 472 + 0 472 84230 7 0 2 220 10 12 21 6 1 17 524 42 150 chain 27473 chr6 171115067 + 131343027 131343432 MER1A 529 - 8 466 94735 47 15 17 161 2 1 120 2 10 30 14 58 14 chain 27514 chr6 171115067 + 131374463 131374965 LTR3B_ 500 - 0 499 94620 25 37 0 8 16 53 5 0 2 19 22 11 22 1 2 14 1 6 34 1 0 8 0 1 128 5 6 80 12 11 64 chain 37358 chr6 171115067 + 131375758 131376252 LTR3B_ 500 - 0 500 73020 94 23 27 27 0 1 51 0 1 137 0 1 82 2 1 78 chain 14340 chr6 171115067 + 131395339 131395545 L1PA8 5853 - 0 201 143423 92 3 2 18 2 1 46 1 0 5 1 0 9 1 0 28 chain 2447 chr6 171115067 + 131399464 131399490 L1PB1 5432 + 5194 5220 233728 26 chain 9163 chr6 171115067 + 131399492 131399714 L1PB1 5432 + 5221 5421 164744 15 1 0 45 1 0 15 1 0 4 2 0 11 9 0 8 22 19 8 2 0 15 1 2 7 1 0 21 1 0 12 5 4 9 1 0 5 chain 25329 chr6 171115067 + 131400687 131401000 AluSp 311 + 0 307 103074 33 0 1 267 7 0 6 chain 2207 chr6 171115067 + 131407087 131407459 L1PA13 3608 + 113 461 58981 25 3 0 26 2 1 13 3 0 23 27 17 66 10 7 122 1 0 15 1 0 17 2 0 16 chain 525333 chr6 171115067 + 131407476 131413601 L1PA5 6144 + 0 6141 4651 1065 0 1 99 24 15 405 0 1 352 0 1 375 0 1 26 1 0 836 0 1 325 1 2 176 0 1 89 0 1 305 0 1 80 1 2 790 0 1 459 0 1 684 0 15 21 1 0 10 chain 3364 chr6 171115067 + 131414956 131415523 L1PA13 3608 + 1198 1772 58981 59 0 5 132 1 0 7 0 1 68 0 1 279 7 8 14 chain 130463 chr6 171115067 + 131420294 131421886 L1PA8A 6298 - 7 1610 27974 562 0 3 24 0 5 208 1 0 564 1 2 23 3 4 99 5 7 102 chain 25591 chr6 171115067 + 131429343 131429696 THE1A 353 - 0 353 101777 137 1 0 4 1 4 6 1 0 82 12 11 109 chain 3650 chr6 171115067 + 131436522 131436581 L1MB7 1623 - 796 856 212789 15 7 8 37 chain 3950 chr6 171115067 + 131461356 131461447 MER5B 177 - 76 159 208126 22 0 1 4 30 21 35 chain 53314 chr6 171115067 + 131464901 131465469 SVA_E 1901 - 0 568 56822 568 chain 4178 chr6 171115067 + 131480576 131480642 MER5C 305 - 68 134 204851 29 1 0 11 0 1 6 0 1 4 1 0 14 chain 19945 chr6 171115067 + 131491220 131491437 L1PA3long 6157 + 5930 6147 127319 217 chain 7144 chr6 171115067 + 131517703 131517786 L1M1 2793 - 1643 1726 176447 83 chain 31162 chr6 171115067 + 131518891 131519338 LTR14B 630 - 0 617 82234 85 11 14 176 1 12 16 7 53 30 0 129 91 19 0 11 chain 43781 chr6 171115067 + 131522580 131523058 L1PA3long 6157 - 847 1325 64475 478 chain 76976 chr6 171115067 + 131523059 131523909 L1PA3long 6157 + 5305 6157 44985 145 0 1 551 0 1 154 chain 24659 chr6 171115067 + 131532627 131532933 AluY 311 + 4 303 106672 119 11 4 176 chain 56134 chr6 171115067 + 131551039 131551851 L1PA16 3655 - 211 1027 55046 138 11 7 9 2 0 89 1 0 284 1 0 4 17 18 6 0 4 104 0 3 14 3 8 82 13 12 34 chain 544264 chr6 171115067 + 131556056 131562207 L1PA4 6152 - 9 6150 2176 139 1 0 312 1 0 538 0 5 1728 0 1 243 1 0 6 0 1 822 1 0 683 0 1 1536 19 5 121 chain 2879 chr6 171115067 + 131592601 131592636 L1ME1 1623 - 1165 1200 227379 35 chain 16403 chr6 171115067 + 131609845 131610093 MER44A 345 - 0 231 137199 106 26 0 46 0 2 7 0 7 63 chain 38691 chr6 171115067 + 131616496 131616946 LTR7 482 + 0 482 71161 265 0 31 9 0 1 176 chain 289770 chr6 171115067 + 131616948 131620627 HERVH-int 3825 + 0 3825 14035 181 6 8 10 3 1 11 0 11 239 121 0 73 9 4 32 1 0 10 1 0 24 6 18 9 3 0 8 21 0 11 6 26 21 1 0 16 16 16 26 0 1 7 0 2 13 0 3 671 0 2 227 8 35 290 0 4 336 0 4 770 8 218 373 0 3 111 chain 3283 chr6 171115067 + 131617474 131617519 HERVH-int 3825 + 476 522 197178 36 0 1 9 chain 38826 chr6 171115067 + 131621886 131622336 LTR7 482 + 0 482 70979 265 0 31 9 0 1 176 chain 30774 chr6 171115067 + 131623207 131623951 MLT2A1 477 + 0 477 82912 142 9 10 17 2 6 15 1 0 134 1 0 58 318 48 47 chain 17237 chr6 171115067 + 131624793 131625175 MSTA 426 + 8 426 134961 81 41 65 52 88 104 5 0 2 89 6 0 20 chain 39714 chr6 171115067 + 131644435 131644886 LTR7 482 + 0 482 69735 261 0 31 190 chain 291725 chr6 171115067 + 131644888 131648571 HERVH-int 3825 + 0 3825 13921 532 5 0 38 2 1 9 1 0 9 4 0 14 7 1 15 1 0 12 26 0 18 24 3 4 1 0 41 1 0 28 68 5 49 1 0 291 0 1 58 0 4 125 0 17 410 4 31 295 0 10 1049 9 11 39 8 218 262 0 2 223 chain 39880 chr6 171115067 + 131649827 131650277 LTR7 482 + 0 482 69484 242 0 1 22 0 31 186 chain 67260 chr6 171115067 + 131652449 131653408 MER41-int 2638 + 1692 2636 49540 17 1 2 110 5 4 5 0 1 45 11 9 82 22 5 95 0 1 24 6 4 253 1 0 59 8 13 215 chain 40031 chr6 171115067 + 131659939 131660390 LTR7 482 + 0 482 69275 247 0 31 204 chain 296271 chr6 171115067 + 131660392 131664047 HERVH-int 3825 + 0 3825 13630 532 68 0 38 65 0 10 1 0 24 6 56 21 0 1 15 1 0 52 0 1 14 0 2 12 0 3 253 0 1 648 13 33 110 0 1 188 0 10 343 0 4 748 8 218 260 0 2 225 chain 4861 chr6 171115067 + 131660924 131660987 HERVH-int 3825 + 471 532 188743 17 2 0 44 chain 2692 chr6 171115067 + 131661066 131661094 HERVH-int 3825 + 542 570 230325 28 chain 39031 chr6 171115067 + 131665253 131665704 LTR7 482 + 0 482 70689 266 0 31 185 chain 2879 chr6 171115067 + 131680014 131680049 Ricksha_c 1012 - 420 454 227395 7 1 0 27 chain 4318 chr6 171115067 + 131697442 131697498 MER53 195 - 27 83 202990 56 chain 9984 chr6 171115067 + 131707528 131707653 MER50 708 - 24 150 160656 103 0 1 22 chain 34390 chr6 171115067 + 131723655 131724038 L1PA3long 6157 + 5769 6157 77076 235 1 6 147 chain 27470 chr6 171115067 + 131724064 131724485 LTR7B 505 + 0 491 94744 105 0 10 60 0 38 12 21 16 8 0 31 41 1 2 42 1 0 23 0 1 40 4 0 12 14 13 37 chain 289977 chr6 171115067 + 131724499 131727991 HERVH-int 3825 + 0 3825 14019 488 0 1 21 30 25 35 1 0 10 1 0 23 0 92 61 0 1 6 0 2 13 0 3 900 8 35 1354 9 11 39 37 247 231 0 2 225 chain 30773 chr6 171115067 + 131729253 131729682 LTR7B 505 + 0 503 82914 107 1 11 57 0 38 12 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 20262 chr6 171115067 + 131731748 131732089 THE1C 375 + 0 345 126338 64 21 22 15 20 21 13 0 4 37 0 2 11 15 9 36 0 2 109 chain 25181 chr6 171115067 + 131754510 131754878 MSTA 426 + 42 419 103840 150 10 9 5 3 0 86 16 25 40 9 13 49 chain 140095 chr6 171115067 + 131765409 131767038 L1PA7 6471 + 4843 6467 26129 860 2 0 94 0 1 663 4 0 6 chain 26729 chr6 171115067 + 131789336 131789696 L1PA8 5853 - 0 352 97226 93 1 0 19 2 1 33 2 1 11 0 1 4 1 0 9 1 0 73 2 0 29 1 0 17 1 0 61 chain 28202 chr6 171115067 + 131794496 131795027 L1PA11 4918 + 4136 4629 92303 71 0 1 22 0 4 15 0 1 4 1 0 82 4 0 57 2 1 13 2 0 6 3 0 62 7 5 9 1 0 19 4 0 9 31 22 15 1 0 13 60 44 18 chain 7271 chr6 171115067 + 131808106 131808262 MSTB1 431 - 0 154 175645 10 2 3 77 46 43 21 chain 39695 chr6 171115067 + 131825466 131825917 LTR7 482 - 0 482 69762 188 0 31 263 chain 238155 chr6 171115067 + 131827174 131830158 HERVH-int 3825 - 0 3194 16872 376 1 4 6 3 0 101 8 218 243 8 69 757 0 2 333 4 31 12 0 1 346 0 2 101 15 0 164 2 1 279 1 0 10 0 4 35 22 9 24 51 6 35 1 0 6 21 0 19 chain 5775 chr6 171115067 + 131830256 131830326 LTR7Y 441 - 371 441 187386 70 chain 45214 chr6 171115067 + 131830410 131830956 MER41A 554 + 0 554 62814 87 0 1 127 0 3 8 0 1 127 0 3 197 chain 4020 chr6 171115067 + 131832070 131832238 MER20 218 - 0 184 207078 16 47 65 37 52 50 16 chain 19518 chr6 171115067 + 131836960 131837297 L1PA14 3548 - 95 417 128599 39 1 0 16 7 5 16 4 2 32 4 0 8 7 6 107 2 1 11 6 3 70 1 0 6 chain 481017 chr6 171115067 + 131847645 131853386 L1PA6 6164 - 329 6140 7694 466 0 3 241 0 1 471 0 1 286 0 4 29 1 0 31 0 2 105 0 1 671 0 1 66 0 1 155 1 0 76 2 0 32 21 23 294 1 2 290 0 4 178 2 1 66 19 0 155 0 2 235 0 1 600 4 5 12 0 1 499 0 17 21 1 2 103 0 20 113 0 32 49 1 0 217 1 0 226 chain 26948 chr6 171115067 + 131853396 131853705 L1PA6 6164 + 5853 6162 96459 309 chain 28952 chr6 171115067 + 131856766 131857072 AluYa5 310 - 4 310 89210 306 chain 526059 chr6 171115067 + 131859396 131866181 L1PA7 6471 + 0 6466 4582 238 5 0 165 1 0 9 1 0 369 2 1 374 0 1 440 0 3 159 0 2 25 0 4 684 0 2 43 0 2 116 13 0 223 0 8 234 0 2 128 1 5 6 4 0 237 8 6 58 0 4 97 0 2 21 332 0 339 2 3 975 1 0 250 0 3 93 0 1 215 0 1 73 1 0 30 0 1 566 1 0 79 0 2 167 chain 30427 chr6 171115067 + 131863071 131863389 AluYb8 318 - 0 318 83604 318 chain 4139 chr6 171115067 + 131873231 131873278 MER5A 189 + 124 171 205375 47 chain 79735 chr6 171115067 + 131874231 131875292 L1PA8 5853 - 0 1281 43718 93 1 0 19 2 1 130 3 1 45 1 0 306 9 12 202 8 0 10 0 1 24 5 7 139 0 3 53 0 224 11 chain 3919 chr6 171115067 + 131877741 131877787 L1MA5A 2387 + 2236 2282 208563 46 chain 53457 chr6 171115067 + 131886071 131886913 L1MA2 4263 - 152 992 56716 6 1 0 23 0 1 11 18 12 11 0 2 80 11 9 32 20 32 86 13 10 134 1 0 76 10 6 5 0 1 8 1 2 150 0 2 21 0 1 19 2 0 72 1 0 23 2 0 5 chain 13479 chr6 171115067 + 131956569 131956765 PABL_B 668 + 2 205 146419 18 1 9 92 10 8 34 0 1 41 chain 38259 chr6 171115067 + 132007811 132008390 L1PA16 3655 - 65 635 71766 12 3 0 30 2 0 5 0 2 125 1 0 109 24 22 30 7 5 46 1 0 84 0 2 14 14 12 72 chain 23171 chr6 171115067 + 132034074 132034456 THE1B 368 + 0 368 114810 64 35 18 87 1 0 23 2 0 9 5 13 14 14 12 128 chain 12492 chr6 171115067 + 132046408 132046706 MLT1A0 366 - 22 325 150280 109 130 135 59 chain 24392 chr6 171115067 + 132068954 132069339 THE1D 372 - 2 372 108124 170 50 25 91 4 0 8 5 19 57 chain 2784 chr6 171115067 + 132069343 132069373 MER58A 224 - 147 177 228962 30 chain 23273 chr6 171115067 + 132089431 132089746 AluSp 311 + 2 306 114331 54 1 3 238 13 0 9 chain 10866 chr6 171115067 + 132089748 132089950 MSTA 426 + 184 400 156709 30 7 5 10 38 54 117 chain 24087 chr6 171115067 + 132105084 132105433 THE1C 375 - 25 375 109815 13 11 10 140 0 1 47 29 30 109 chain 3580 chr6 171115067 + 132133722 132133780 MER4D 903 - 9 67 213980 25 1 0 22 1 2 9 chain 77899 chr6 171115067 + 132177379 132178218 L1PA2 6032 - 752 1591 44567 839 chain 65812 chr6 171115067 + 132178218 132178945 L1PA2 6032 + 5297 6024 50187 569 5 0 9 0 5 144 chain 26212 chr6 171115067 + 132180721 132181155 LTR3A 482 - 40 479 99161 23 16 23 15 0 1 108 55 44 35 8 10 24 0 2 12 0 1 28 0 1 5 0 1 62 0 1 43 chain 10940 chr6 171115067 + 132202747 132202873 AluSx3 311 + 6 132 156444 126 chain 7378 chr6 171115067 + 132219346 132219433 LTR8A 794 - 707 794 174913 87 chain 38124 chr6 171115067 + 132222689 132223143 LTR7 482 + 0 482 71950 230 0 31 24 1 0 144 9 7 46 chain 298405 chr6 171115067 + 132223145 132226860 HERVH-int 3825 + 0 3825 13510 212 4 15 305 67 0 38 1 0 10 1 0 9 4 0 14 7 1 15 1 0 11 4 1 14 9 7 4 1 0 41 1 0 28 64 5 38 0 15 451 15 0 348 12 12 91 4 31 418 0 3 983 0 210 268 0 2 111 0 3 111 chain 38368 chr6 171115067 + 132228108 132228557 LTR7 482 + 0 482 71618 264 0 31 124 12 14 49 chain 24632 chr6 171115067 + 132240459 132240794 L1PA13 3608 + 3163 3487 106818 110 2 0 63 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 19 chain 17942 chr6 171115067 + 132248658 132248871 LTR12D 1347 - 0 213 133000 213 chain 4203 chr6 171115067 + 132249450 132249525 ORSL-2b 485 + 329 403 204508 39 16 15 20 chain 3950 chr6 171115067 + 132252048 132252096 MER3 215 + 35 83 208125 48 chain 5005 chr6 171115067 + 132253926 132253985 MER3 215 + 24 83 195080 59 chain 30007 chr6 171115067 + 132261423 132261813 L1PA8 5853 + 5469 5853 84783 95 1 0 45 2 0 68 3 2 8 2 1 72 1 0 93 chain 18884 chr6 171115067 + 132262052 132262310 MER4E1 777 - 36 298 130412 87 1 0 4 0 1 79 15 21 5 2 0 65 chain 23853 chr6 171115067 + 132264026 132264303 AluSz6 309 - 22 299 111171 277 chain 6178 chr6 171115067 + 132290765 132290835 L1PA8 5853 + 5783 5853 183758 70 chain 90565 chr6 171115067 + 132309127 132310159 L1PA6 6164 - 3 1034 39447 757 1 0 274 chain 42367 chr6 171115067 + 132324640 132325642 MER41A 554 + 0 554 66193 126 457 5 338 10 14 71 chain 16738 chr6 171115067 + 132349032 132349234 MER107 203 - 0 203 136289 62 0 1 140 chain 36807 chr6 171115067 + 132349748 132350237 L1PA16 3655 + 3078 3575 73791 99 1 5 20 0 4 85 2 0 18 0 1 103 5 6 156 chain 3130 chr6 171115067 + 132352654 132352697 L1MB3 1562 - 7 50 222354 14 0 1 17 1 0 11 chain 23324 chr6 171115067 + 132388077 132388358 AluSc 308 - 14 298 114062 15 0 3 266 chain 142764 chr6 171115067 + 132414235 132415804 L1PA3long 6157 - 0 1569 25690 1569 chain 55738 chr6 171115067 + 132483747 132484483 L1PA8 5853 + 5128 5853 55278 436 1 0 37 9 7 74 1 0 5 2 1 52 2 1 19 2 1 82 4 0 10 chain 34564 chr6 171115067 + 132499613 132500000 MER9a1 513 + 16 404 76805 156 1 2 230 chain 10057 chr6 171115067 + 132500000 132500109 MER9a2 513 + 404 513 160297 109 chain 305625 chr6 171115067 + 132502678 132507300 L1PB1 5432 + 641 5422 13183 122 5 6 113 55 14 61 14 15 360 2 0 5 0 2 51 23 29 202 0 7 114 21 18 151 12 16 144 0 139 141 42 44 101 1 0 4 2 4 31 0 1 5 7 6 240 5 8 22 0 1 8 5 4 12 1 0 104 10 5 49 6 7 97 8 0 58 8 1 285 3 0 28 2 0 12 0 5 210 2 3 15 38 14 28 0 1 197 4 0 224 0 1 32 3 2 60 35 20 326 3 0 36 6 5 137 5 4 127 0 2 118 186 292 23 2 1 21 1 0 12 1 0 18 chain 27840 chr6 171115067 + 132545504 132545869 THE1C 375 + 9 375 93560 116 3 0 15 1 5 230 chain 19987 chr6 171115067 + 132598166 132598517 THE1B 368 - 0 366 127182 138 28 36 25 1 0 52 5 6 16 34 35 7 0 6 45 chain 484801 chr6 171115067 + 132626102 132632096 L1PA8A 6298 + 266 6291 7566 43 14 13 6 2 0 78 2 0 17 1 0 9 1 0 3 1 0 75 1 0 367 0 12 210 0 4 26 3 0 11 5 6 221 0 1 66 0 1 348 1 2 20 0 1 500 8 0 82 0 2 110 0 1 464 2 0 77 0 1 64 0 3 295 6 1 28 1 2 45 1 0 55 0 3 332 0 1 299 0 1 811 0 10 47 0 8 132 0 1 308 1 4 73 0 2 5 0 2 243 2 0 6 0 1 466 chain 41209 chr6 171115067 + 132650108 132650594 L1PA5 6144 - 3 482 67639 262 1 0 58 6 0 159 chain 15506 chr6 171115067 + 132651299 132651661 MER1B 344 + 0 331 139874 13 4 18 50 73 33 47 30 26 29 4 0 52 9 13 30 1 0 20 chain 402713 chr6 171115067 + 132670145 132675730 L1PB1 5432 - 14 5407 10005 14 1 0 13 1 0 21 1 0 24 2 0 14 8 5 12 1 0 6 8 0 9 2 0 4 1 0 16 1 0 40 4 3 18 1 0 49 3 1 10 17 12 13 1 0 20 155 11 477 5 1 552 0 5 125 4 0 219 17 0 175 0 3 666 1 12 19 9 7 193 5 7 17 5 0 6 4 9 27 1 6 82 9 0 581 0 2 215 7 0 226 0 1 73 16 0 68 1 2 313 4 3 140 0 1 33 10 6 66 0 3 157 11 12 53 5 17 244 0 1 4 1 0 249 chain 29663 chr6 171115067 + 132697641 132697951 AluYa5 310 - 0 310 85993 310 chain 23168 chr6 171115067 + 132698984 132699282 AluSq2 311 + 0 294 114826 133 1 2 47 5 0 112 chain 25560 chr6 171115067 + 132706959 132707259 AluY 311 + 0 300 101927 28 1 0 104 0 1 167 chain 85835 chr6 171115067 + 132728235 132729196 L1PA4 6152 - 676 1638 41219 12 0 1 949 chain 56587 chr6 171115067 + 132729196 132729851 L1PA4 6152 + 5490 6143 54791 508 7 0 8 0 7 71 2 0 59 chain 278534 chr6 171115067 + 132742139 132746117 L1PA10 4194 - 44 4007 14718 34 3 0 77 0 1 78 6 3 5 0 2 27 0 1 7 7 14 249 0 4 166 7 0 393 30 31 103 9 1 302 0 12 16 0 1 43 7 5 345 0 4 207 0 4 57 4 1 183 9 7 92 1 0 172 4 6 40 6 26 477 9 1 244 9 10 78 6 0 131 3 2 4 1 0 28 0 14 24 158 127 5 1 0 15 65 58 6 2 0 6 3 0 14 chain 23985 chr6 171115067 + 132761704 132762032 MER41C 542 - 208 542 110416 15 4 5 61 6 9 163 0 1 34 0 1 45 chain 5961 chr6 171115067 + 132799269 132799339 L1PA7 6471 + 6398 6468 185586 70 chain 27974 chr6 171115067 + 132808429 132808781 L1PA8 5853 + 5506 5853 93095 15 0 1 42 1 0 44 2 0 71 1 0 14 1 0 8 0 1 42 1 0 16 1 0 93 chain 2492 chr6 171115067 + 132825200 132825262 MADE1 96 + 0 38 233204 7 0 1 16 25 0 14 chain 28214 chr6 171115067 + 132837805 132838174 MLT2A1 477 + 0 383 92259 140 0 1 28 1 5 89 7 13 65 0 3 39 chain 18974 chr6 171115067 + 132851091 132851451 MER57-int 2662 + 40 395 130175 30 77 59 51 0 8 52 5 15 58 6 1 81 chain 30678 chr6 171115067 + 132853049 132853452 THE1B-int 1605 + 1210 1599 83073 201 15 0 106 0 1 81 chain 86541 chr6 171115067 + 132854995 132856110 MER11A 1151 + 7 1151 40957 169 8 0 23 2 0 93 10 9 142 0 1 94 0 1 7 14 13 125 1 2 57 0 4 56 1 0 15 7 41 66 0 1 225 chain 29039 chr6 171115067 + 132877792 132878235 L1PB2 3958 - 120 559 88811 63 2 1 21 2 0 72 1 0 63 1 0 38 0 1 92 8 14 12 5 4 5 3 0 14 2 0 39 chain 55300 chr6 171115067 + 132908960 132909579 L1PA5 6144 + 5514 6135 55519 526 0 2 93 chain 17868 chr6 171115067 + 132942399 132942669 L1PA8 5853 - 0 264 133199 93 4 3 13 1 0 20 2 1 35 1 0 9 1 0 34 12 13 24 2 0 19 chain 254360 chr6 171115067 + 132947591 132950682 L1PA7 6471 - 2 3114 16011 146 6 7 692 0 3 271 0 1 394 1 0 73 18 19 185 0 4 186 0 1 567 6 16 74 0 1 472 chain 514651 chr6 171115067 + 132955968 132962445 L1PA7 6471 + 1 6467 5708 4 1 0 90 0 19 4 19 0 25 27 28 232 0 2 822 0 7 154 4 0 6 0 5 359 0 1 351 0 1 30 1 2 125 0 1 370 8 9 243 10 8 299 1 0 286 0 3 62 0 4 125 42 13 140 15 0 173 1 0 253 0 1 227 0 1 121 0 2 62 0 4 97 0 3 174 1 0 103 11 12 173 1 2 92 0 1 268 1 0 24 0 4 653 1 0 186 chain 27991 chr6 171115067 + 132970620 132970992 THE1C 375 - 0 375 93029 180 10 9 170 0 4 12 chain 11588 chr6 171115067 + 132999139 132999279 L1P4 1494 - 370 510 153937 140 chain 3245 chr6 171115067 + 133002299 133002645 MLT1F2 592 + 138 543 220115 23 3 4 19 275 333 26 chain 7291 chr6 171115067 + 133007163 133007277 MER53 195 - 0 111 175503 27 5 0 57 3 5 22 chain 59486 chr6 171115067 + 133031519 133032213 L1PA7 6471 - 7 702 53119 495 0 1 199 chain 3166 chr6 171115067 + 133037865 133037902 L1MCa 1829 + 455 492 221612 37 chain 74403 chr6 171115067 + 133041956 133042913 LTR5B 1012 - 14 1012 46315 322 6 35 57 0 1 94 1 0 110 15 14 223 1 14 128 chain 20918 chr6 171115067 + 133060306 133060579 AluSp 311 + 15 288 124219 119 14 16 5 2 0 133 chain 5141 chr6 171115067 + 133068362 133068469 L1MA3 4352 + 4254 4352 193649 6 2 0 22 1 0 6 1 0 21 5 4 15 6 2 22 chain 25790 chr6 171115067 + 133117205 133117515 AluY 311 + 0 304 100910 122 2 0 4 4 0 178 chain 30572 chr6 171115067 + 133127797 133128191 MLT2A1 477 + 0 391 83260 168 5 2 11 0 1 8 0 1 13 0 1 180 3 0 6 chain 3596 chr6 171115067 + 133163280 133163418 L1MA8 2339 - 85 218 213718 21 8 6 17 62 59 30 chain 96775 chr6 171115067 + 133167028 133168123 L1PA4 6152 - 12 1107 37625 174 0 1 664 1 0 256 chain 9935 chr6 171115067 + 133177406 133177545 AluYc 301 + 139 278 160897 106 0 2 5 8 6 20 chain 5948 chr6 171115067 + 133198266 133198379 LTR77 607 + 462 573 185697 26 28 25 11 0 1 48 chain 98510 chr6 171115067 + 133210912 133212286 L1PA10 4194 - 2200 3542 37157 226 17 1 191 20 0 47 20 19 18 12 11 164 0 1 47 1 2 289 45 49 277 chain 10889 chr6 171115067 + 133212286 133212435 L1PA8 5853 + 5706 5853 156626 34 2 1 18 2 1 93 chain 27703 chr6 171115067 + 133212754 133213051 AluYa5 310 - 14 310 94032 203 1 0 93 chain 17937 chr6 171115067 + 133225374 133225581 L1PA7 6471 + 6255 6461 133013 68 1 0 138 chain 416617 chr6 171115067 + 133302243 133307200 L1PA6 6164 - 4 4986 9618 327 8 9 425 2 9 90 0 4 415 10 0 238 1 0 488 1 7 45 1 16 102 1 0 69 4 3 470 0 1 39 0 1 142 5 0 322 0 3 609 0 1 487 0 1 382 0 2 226 12 13 36 chain 8897 chr6 171115067 + 133307200 133307305 L1P1 4361 - 1941 2046 166152 105 chain 31614 chr6 171115067 + 133325267 133325616 L1PA5 6144 - 4 353 81459 349 chain 566953 chr6 171115067 + 133341855 133347882 L1HS 6032 - 0 6029 91 143 0 1 5815 0 1 69 chain 23400 chr6 171115067 + 133351234 133351501 AluYk4 311 - 36 303 113647 267 chain 30222 chr6 171115067 + 133371513 133371831 AluYb8 318 - 0 318 84126 318 chain 519758 chr6 171115067 + 133438808 133444913 L1PA5 6144 - 9 6144 5183 137 15 17 1180 8 13 499 8 10 1126 3 0 923 3 5 433 0 2 228 8 10 181 0 2 199 9 0 529 0 1 440 2 0 22 13 25 15 1 15 123 chain 21264 chr6 171115067 + 133446056 133446341 L1PA5 6144 + 5864 6144 122983 213 2 0 40 2 1 14 3 1 11 chain 540586 chr6 171115067 + 133463219 133469236 L1PA3long 6157 - 5 6149 2723 857 0 3 3084 0 2 1302 9 137 52 8 1 561 0 1 144 chain 300992 chr6 171115067 + 133472535 133476250 L1P3 4156 - 19 3745 13374 21 1 0 9 2 0 101 1 0 71 5 6 446 6 4 844 1 2 18 3 5 157 0 3 400 0 4 33 5 8 1289 21 24 281 chain 21585 chr6 171115067 + 133498325 133498566 L1PA4 6152 + 5903 6151 121828 224 0 7 17 chain 54264 chr6 171115067 + 133499070 133499733 L1PA7 6471 - 4 671 56192 6 6 0 37 10 19 470 0 1 134 chain 29512 chr6 171115067 + 133525625 133525932 AluYa5 310 + 1 308 86597 307 chain 43683 chr6 171115067 + 133530510 133531204 LTR12F 595 - 0 595 64591 193 20 1 38 0 1 122 79 0 25 14 5 25 0 8 32 2 0 41 0 1 103 chain 3557 chr6 171115067 + 133530883 133530931 LTR12F 595 - 445 491 199698 6 3 1 39 chain 32055 chr6 171115067 + 133590894 133591351 MLT2A1 477 - 0 477 80770 6 0 4 30 0 38 36 47 20 170 1 5 25 0 1 142 chain 213766 chr6 171115067 + 133591351 133593944 HERVL-int 5654 - 0 2586 18241 223 0 1 9 0 5 95 0 1 91 5 4 217 5 1 185 10 0 67 0 1 892 2 0 59 0 1 290 0 1 443 chain 30208 chr6 171115067 + 133594261 133594639 MLT2A1 477 - 95 477 84171 209 0 4 24 2 3 44 1 0 98 chain 4049 chr6 171115067 + 133602675 133602729 L1MB8 1703 - 1049 1101 206653 5 2 0 47 chain 24662 chr6 171115067 + 133620587 133620878 AluY 311 + 20 311 106659 291 chain 4010 chr6 171115067 + 133686407 133686457 LTR40a 516 + 466 516 207239 50 chain 4666 chr6 171115067 + 133699139 133699280 L1MA10 1535 + 1413 1535 198902 29 45 31 29 18 13 20 chain 21012 chr6 171115067 + 133718809 133719120 THE1B 368 - 20 368 123868 108 32 42 13 1 13 113 0 15 44 chain 9686 chr6 171115067 + 133751173 133751309 L1PA16 3655 - 73 205 162170 5 3 0 96 9 8 23 chain 37207 chr6 171115067 + 133762514 133763065 LTR10F 562 - 0 562 73232 209 9 15 52 9 8 12 1 25 9 0 14 21 35 0 142 2 5 50 chain 185803 chr6 171115067 + 133792044 133794107 L1P1 4361 - 33 2093 20431 23 1 0 155 1 0 979 1 0 903 chain 6299 chr6 171115067 + 133815993 133816122 L1MA3 4352 + 4190 4311 182801 42 14 10 18 2 0 22 13 11 18 chain 49724 chr6 171115067 + 133828535 133829130 L1PA7 6471 - 21 618 59211 416 5 7 174 chain 4000 chr6 171115067 + 133839566 133839617 MADE1 96 + 45 96 207383 51 chain 314735 chr6 171115067 + 133839843 133843266 L1PA2 6032 + 2574 6032 12817 648 0 2 616 0 11 795 0 22 1364 chain 5866 chr6 171115067 + 133848715 133848834 MER33 330 - 192 317 186523 15 16 4 30 11 29 47 chain 3512 chr6 171115067 + 133868814 133868855 MADE1 96 + 55 96 215182 41 chain 83644 chr6 171115067 + 133875128 133876176 L1PA8 5853 - 0 1044 42056 92 2 1 16 1 0 45 14 14 6 1 0 71 2 0 44 1 0 47 1 2 427 1 4 75 6 0 6 1 5 189 chain 15776 chr6 171115067 + 133878129 133878340 MLT2A1 477 - 0 251 139036 8 0 4 43 6 40 18 0 2 136 chain 307404 chr6 171115067 + 133878345 133882648 HERVL-int 5654 - 1836 5653 13109 283 9 0 7 0 9 201 2 1 307 1 0 179 1 0 90 0 7 120 513 0 609 1 2 131 0 1 5 1 0 745 1 0 82 1 0 172 20 32 354 0 3 111 0 8 221 0 1 136 chain 44047 chr6 171115067 + 133879551 133880058 MER9a2 513 - 0 513 64154 423 0 6 84 chain 29003 chr6 171115067 + 133882900 133883281 MLT2A1 477 - 94 473 88973 92 0 1 118 8 5 163 chain 25897 chr6 171115067 + 133894645 133894935 AluYf4 310 + 11 301 100455 23 0 1 97 1 0 169 chain 34553 chr6 171115067 + 133898545 133898932 L1PA4 6152 + 5756 6143 76824 387 chain 515906 chr6 171115067 + 133935452 133941881 L1PA7 6471 + 1 6467 5582 340 1 0 62 0 2 335 0 15 203 6 18 361 0 1 130 14 20 264 1 0 6 5 6 13 2 0 219 1 10 37 0 1 588 38 0 454 10 14 380 0 2 68 0 4 17 3 0 5 1 4 312 0 1 4 1 0 92 1 13 403 18 23 301 0 1 254 6 7 630 1 4 85 3 2 53 4 1 45 0 2 216 0 2 436 chain 28998 chr6 171115067 + 133970585 133971075 MLT2A1 477 + 0 477 88995 168 5 2 9 0 1 24 0 1 76 0 2 7 1 0 5 1 2 85 81 68 16 1 0 11 chain 302226 chr6 171115067 + 133971115 133974364 L1HS 6032 + 2781 6030 13310 3249 chain 422715 chr6 171115067 + 133975214 133980627 HERVL-int 5654 + 29 5274 9467 23 0 1 4 5 3 43 3 2 164 0 3 425 8 9 64 0 1 99 0 5 137 1 2 26 1 0 338 4 3 237 4 3 14 0 1 121 163 0 507 0 1 4 1 0 243 0 1 30 1 0 891 0 8 179 0 2 343 3 5 784 1 2 43 21 0 12 0 11 72 0 3 287 1 2 38 20 1 48 chain 12797 chr6 171115067 + 133976937 133977098 HERVL-int 5654 + 3543 3705 146317 25 4 5 132 chain 24270 chr6 171115067 + 133983170 133983528 THE1B 368 + 7 368 108848 55 7 8 50 0 1 48 6 5 22 7 1 105 3 1 6 0 10 49 chain 135606 chr6 171115067 + 133985471 133987341 SVA_F 1814 + 335 1814 26909 545 2 0 56 0 1 10 1 15 95 226 0 130 178 0 627 chain 5334 chr6 171115067 + 133986180 133986239 SVA_F 1814 + 1233 1291 143000 41 1 0 17 chain 7189 chr6 171115067 + 133986263 133986342 SVA_F 1814 + 1139 1219 176150 75 0 1 4 chain 1196 chr6 171115067 + 133986355 133986406 SVA_F 1814 + 375 697 183434 13 1 0 4 0 272 33 chain 5944 chr6 171115067 + 133986536 133986701 SVA_F 1814 + 1011 1176 121713 165 chain 28262 chr6 171115067 + 134012888 134013242 THE1B 368 + 0 368 92070 44 0 15 109 1 0 32 2 0 62 0 1 44 0 1 60 chain 29755 chr6 171115067 + 134019791 134020201 LOR1b 457 + 42 457 85632 4 0 1 98 1 0 39 8 17 128 8 1 54 0 3 70 chain 5221 chr6 171115067 + 134031119 134031205 L1PREC2 3366 - 307 389 192823 11 2 0 38 6 4 29 chain 3335 chr6 171115067 + 134047803 134047840 L1MEb 951 - 233 270 218314 37 chain 41006 chr6 171115067 + 134071951 134072551 L1PA8 5853 + 5297 5853 67891 267 1 0 37 62 16 37 0 3 5 0 5 12 3 2 6 2 0 52 4 3 18 1 0 93 chain 24277 chr6 171115067 + 134089188 134089469 AluY 311 + 27 309 108792 99 0 1 182 chain 188008 chr6 171115067 + 134116508 134119648 L1PREC2 3366 - 371 3157 20237 24 22 8 11 12 9 21 18 17 17 29 21 13 3 0 4 1 0 41 8 3 54 2 0 139 1 0 119 2 0 43 11 16 196 5 5 297 1 0 51 0 2 23 1 0 89 1 5 176 2 1 10 0 4 17 8 7 99 4 3 121 0 4 6 34 20 48 21 17 77 0 1 204 8 12 63 5 3 8 0 2 115 1 0 66 1 3 209 2 1 66 1 0 36 309 0 82 2 1 27 17 14 11 2 1 23 chain 18119 chr6 171115067 + 134129305 134129674 THE1C 375 + 0 375 132545 19 2 0 25 40 42 92 1 0 5 65 72 120 chain 19313 chr6 171115067 + 134139401 134139737 THE1D 372 - 0 351 129209 33 15 14 86 7 13 32 26 29 86 3 19 8 9 0 31 chain 7874 chr6 171115067 + 134147942 134148112 MER20 218 - 0 177 171843 33 1 0 6 46 50 39 2 6 43 chain 30345 chr6 171115067 + 134179437 134179754 AluYb8 318 + 0 317 83785 317 chain 234755 chr6 171115067 + 134181521 134184936 L1PA14 3548 - 92 3458 17043 41 1 0 19 1 0 9 1 0 8 5 3 35 22 17 103 1 0 82 11 8 17 4 0 15 0 1 93 14 10 42 2 0 10 4 3 124 0 1 124 9 8 145 4 3 434 4 5 779 0 12 266 9 10 4 1 0 113 6 0 8 0 6 32 1 5 63 5 17 27 25 0 64 0 1 82 0 8 24 56 28 248 2 0 25 51 48 9 1 0 67 3 0 60 chain 21951 chr6 171115067 + 134187194 134187494 THE1C-int 1605 - 1189 1543 120427 249 15 69 36 chain 37774 chr6 171115067 + 134187936 134188430 MLT2A1 477 + 0 477 72454 169 4 1 12 0 1 20 0 1 179 0 2 22 18 0 70 chain 23160 chr6 171115067 + 134188891 134189210 LTR70 1284 + 960 1274 114853 195 4 1 37 1 0 43 1 0 38 chain 81174 chr6 171115067 + 134191209 134192108 L1PA3long 6157 + 5258 6157 43101 899 chain 4667 chr6 171115067 + 134218516 134218618 MER21C 908 - 20 119 198896 29 1 0 5 0 2 6 27 18 20 0 5 14 chain 3784 chr6 171115067 + 134237561 134237601 MER82 654 + 47 87 210603 40 chain 510772 chr6 171115067 + 134251791 134257997 L1PA7 6471 + 264 6464 6088 57 3 4 85 1 2 195 2 0 6 0 2 322 9 7 201 3 5 521 24 20 70 0 1 32 11 12 683 1 0 151 0 1 248 12 16 195 0 4 445 3 7 620 0 3 446 1 0 711 8 9 110 33 0 89 0 9 61 0 3 847 chain 36975 chr6 171115067 + 134258077 134258588 L1PBa1 4058 - 3545 4045 73548 81 3 1 121 21 16 239 1 0 6 17 14 22 chain 19575 chr6 171115067 + 134318138 134318404 AluY 311 + 41 290 128445 92 17 2 122 2 0 33 chain 7042 chr6 171115067 + 134322279 134322441 L1PB1 5432 + 5287 5427 177167 12 25 11 17 11 8 11 2 0 58 1 0 18 2 0 5 chain 32570 chr6 171115067 + 134388040 134388480 MLT2A1 477 + 0 477 79908 167 8 5 7 0 1 24 0 1 75 1 3 102 4 0 8 7 47 37 chain 28753 chr6 171115067 + 134392207 134392584 THE1C 375 + 0 375 90098 104 13 12 234 1 0 25 chain 41181 chr6 171115067 + 134406686 134407234 MLT2A2 560 + 0 559 67667 180 1 0 165 0 1 42 1 2 6 1 0 10 7 18 135 chain 21096 chr6 171115067 + 134411222 134411561 THE1B 368 - 4 368 123564 109 41 54 8 2 0 25 2 1 112 1 16 39 chain 22650 chr6 171115067 + 134441814 134442086 AluY 311 + 0 289 117317 57 0 16 59 0 1 156 chain 27060 chr6 171115067 + 134443688 134444049 Tigger3b 1229 + 771 1128 96080 68 4 0 76 0 1 16 0 1 9 2 0 186 chain 29299 chr6 171115067 + 134453266 134453572 AluYa5 310 - 4 310 87578 306 chain 20394 chr6 171115067 + 134454729 134454990 7SLRNA 320 + 19 281 125911 84 9 10 168 chain 40277 chr6 171115067 + 134456251 134456726 LTR10F 562 - 0 562 68907 300 0 87 175 chain 68756 chr6 171115067 + 134457519 134458294 L1PA5 6144 - 6 780 48919 253 1 0 521 chain 25078 chr6 171115067 + 134458294 134458589 L1PA5 6144 + 5067 5361 103945 227 2 1 66 chain 24350 chr6 171115067 + 134471607 134471954 THE1A 353 + 0 353 108374 56 23 29 24 2 1 214 0 1 28 chain 126483 chr6 171115067 + 134471954 134473526 THE1A-int 1579 + 0 1570 28950 169 2 1 5 0 1 252 0 1 620 4 3 86 7 9 180 1 0 78 3 0 5 0 1 155 1 0 4 chain 28228 chr6 171115067 + 134475497 134475797 AluYb8 318 - 18 318 92202 300 chain 9422 chr6 171115067 + 134480289 134480406 MER2 342 + 136 253 163441 117 chain 25553 chr6 171115067 + 134480893 134481245 AluY 311 + 0 311 101965 19 1 0 113 0 1 54 49 8 116 chain 8115 chr6 171115067 + 134514519 134515340 MER6A 605 - 139 565 170416 64 546 162 20 6 0 17 28 27 27 86 82 27 chain 22422 chr6 171115067 + 134529540 134530183 L1PB1 5432 - 10 554 118366 20 1 0 9 1 0 18 7 6 23 2 0 14 1 0 5 3 1 14 14 5 11 3 0 16 1 0 44 1 0 15 2 1 52 2 0 9 242 168 113 chain 40854 chr6 171115067 + 134565116 134565618 L1PA7 6471 - 3 509 68088 9 3 0 134 1 6 180 0 2 175 chain 21027 chr6 171115067 + 134565624 134565909 L1P3 4156 - 3871 4153 123822 23 14 13 58 1 0 30 1 0 158 chain 7669 chr6 171115067 + 134582559 134582763 L1MC1 2226 + 1993 2173 173108 54 46 36 17 6 4 18 24 13 17 1 0 21 chain 26478 chr6 171115067 + 134589581 134589880 AluY 311 + 0 302 98133 45 0 3 254 chain 8402 chr6 171115067 + 134604230 134604329 HY3 101 + 1 100 168840 99 chain 29842 chr6 171115067 + 134606050 134606858 L1PB2 3958 - 120 577 85304 63 1 0 18 10 8 68 1 0 64 1 0 30 333 0 18 39 33 85 5 0 12 2 0 58 chain 4441 chr6 171115067 + 134611507 134611560 MER51E 476 + 324 377 201445 53 chain 20972 chr6 171115067 + 134640911 134641204 THE1C 375 + 0 374 124025 54 1 81 47 1 2 6 1 0 141 0 1 4 2 3 11 1 0 24 chain 21671 chr6 171115067 + 134659390 134659694 AluSp 311 + 12 308 121494 10 6 3 86 0 1 16 2 0 45 2 1 112 3 0 22 chain 87957 chr6 171115067 + 134676488 134677542 MER11C 1089 + 0 1073 40391 40 1 0 155 0 2 41 8 17 58 0 4 371 0 4 45 0 1 335 chain 21251 chr6 171115067 + 134698513 134698767 AluSc 308 - 43 298 123016 53 0 1 201 chain 35458 chr6 171115067 + 134707718 134708143 L1PA6 6164 + 5735 6160 75611 425 chain 24759 chr6 171115067 + 134797210 134797534 L1PA7 6471 - 18 359 106117 88 1 0 78 0 2 5 1 0 125 7 24 19 chain 4673 chr6 171115067 + 134837694 134837864 MER58A 224 - 3 174 198839 5 1 0 10 1 0 29 91 94 33 chain 82282 chr6 171115067 + 134866621 134867520 L1PA4 6152 - 1 900 42639 899 chain 24928 chr6 171115067 + 134879694 134880065 THE1C 375 + 0 375 105175 61 2 0 5 4 6 62 1 5 43 12 13 155 1 0 25 chain 26718 chr6 171115067 + 134880579 134881175 L1PB1 5432 - 10 504 97265 4 1 0 13 5 4 10 1 0 19 4 3 23 2 0 15 1 0 4 2 0 19 16 6 6 1 0 15 1 0 32 3 4 9 1 0 14 3 2 53 2 0 5 26 23 20 91 16 175 chain 343554 chr6 171115067 + 134889548 134894117 L1PB1 5432 + 815 5404 11795 12 0 1 150 1 0 43 0 1 100 0 1 105 0 2 165 1 0 7 2 0 5 25 11 357 2 0 6 0 17 71 0 9 513 0 13 46 0 1 44 3 0 28 9 10 44 0 5 46 5 8 49 0 1 51 2 1 135 0 9 324 0 1 526 0 3 185 0 5 19 12 11 180 5 26 89 25 8 369 3 0 386 0 2 87 1 2 9 1 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 5 2 0 12 9 0 14 8 5 14 2 0 6 4 3 15 1 0 21 1 0 13 chain 116332 chr6 171115067 + 134900605 134902148 L1PA7 6471 + 4901 6470 32326 598 6 0 57 18 16 49 1 0 76 5 6 36 0 5 217 0 41 134 0 1 168 30 31 21 18 0 98 0 4 11 chain 67416 chr6 171115067 + 134918180 134919175 L1PB1 5432 - 8 972 49477 4 1 0 16 1 0 13 1 0 19 1 0 25 3 1 14 13 10 14 19 8 4 1 0 16 1 0 44 1 0 15 2 1 53 2 0 6 19 14 13 10 9 9 9 0 7 1 6 477 1 2 11 0 4 149 chain 5283 chr6 171115067 + 134919176 134919236 L1PB1 5432 + 4390 4450 192175 60 chain 27444 chr6 171115067 + 134921948 134922274 LTR14A 344 - 0 344 94835 65 1 7 9 0 4 90 0 8 161 chain 29871 chr6 171115067 + 134926218 134926561 LTR14A 344 - 0 344 85206 172 0 1 171 chain 32092 chr6 171115067 + 134931644 134932158 MER41B 635 - 90 608 80709 63 31 31 66 60 59 193 7 12 94 chain 32945 chr6 171115067 + 134933044 134933473 MLT2A1 477 + 0 477 79299 140 0 1 26 3 7 211 3 47 26 1 0 19 chain 39753 chr6 171115067 + 134934814 134935323 MER75 514 - 0 514 69684 26 2 1 63 0 4 26 1 2 322 0 1 69 chain 16283 chr6 171115067 + 134951159 134951379 L1PA8 5853 - 5 221 137523 88 1 0 16 1 0 55 13 11 46 chain 102923 chr6 171115067 + 134954027 134955246 LTR12C 1709 - 0 1709 36014 245 9 10 166 0 1 59 0 4 21 0 485 319 1 0 399 chain 77142 chr6 171115067 + 134980247 134981215 LTR5_Hs 974 - 0 974 44889 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 5029 chr6 171115067 + 135018650 135018728 L1MA3 4352 - 2952 3034 194838 4 1 0 24 0 4 14 1 2 34 chain 22232 chr6 171115067 + 135050177 135050476 AluSq2 311 + 11 296 119202 123 15 1 161 chain 10018 chr6 171115067 + 135054005 135054129 Ricksha 1077 - 791 915 160498 124 chain 8425 chr6 171115067 + 135059900 135060005 L1PA7 6471 + 6366 6470 168708 91 2 1 12 chain 53042 chr6 171115067 + 135065815 135066937 L1PB1 5432 - 12 778 56989 12 7 6 7 0 3 22 1 0 18 0 1 5 2 0 14 1 0 5 2 0 19 16 6 6 1 0 15 1 0 45 1 0 14 3 2 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 1 0 7 337 4 287 0 4 6 3 2 150 chain 31267 chr6 171115067 + 135068172 135068542 L1PA7 6471 - 3 374 82049 335 1 2 34 chain 120739 chr6 171115067 + 135097231 135098816 L1P2 5180 + 817 2456 30781 120 8 48 31 40 37 223 10 5 373 0 1 198 0 5 69 1 19 90 1 0 291 3 2 127 chain 287759 chr6 171115067 + 135111062 135115051 L1PA10 4194 + 175 4150 14174 13 7 0 13 3 0 6 15 13 12 2 0 9 1 0 9 1 0 21 2 0 16 1 0 7 45 19 24 2 0 7 10 9 10 6 7 10 1 0 11 4 3 9 1 0 79 10 8 476 0 4 12 2 3 49 0 1 30 1 0 97 1 0 107 5 4 19 0 4 180 1 0 8 6 7 135 1 0 228 1 0 5 0 1 39 3 1 7 0 1 155 0 5 48 1 0 106 5 11 37 4 14 79 1 4 182 0 1 15 0 5 16 8 7 36 5 6 13 0 1 4 1 0 63 0 5 141 5 6 94 2 0 230 12 12 124 0 1 116 0 3 121 4 3 21 6 1 6 0 6 316 1 0 194 3 0 34 chain 29445 chr6 171115067 + 135179585 135179958 THE1C 375 - 0 375 86873 99 0 1 89 3 0 40 0 4 142 chain 22147 chr6 171115067 + 135192544 135192848 LTR18A 364 - 0 317 119604 106 0 29 8 22 6 168 chain 30214 chr6 171115067 + 135192863 135193180 AluYb8 318 - 1 318 84146 317 chain 6075 chr6 171115067 + 135193444 135193538 HERVL18-int 2198 - 1508 1603 184619 11 10 11 73 chain 27632 chr6 171115067 + 135196453 135196787 LTR18A 364 - 1 364 94261 117 0 29 217 chain 24928 chr6 171115067 + 135211268 135211561 AluSp 311 - 10 303 105173 293 chain 131898 chr6 171115067 + 135225687 135227235 LTR12C 1709 + 0 1709 27657 436 0 1 261 0 159 254 1 0 6 3 1 106 0 4 212 0 1 63 1 0 205 chain 11212 chr6 171115067 + 135256087 135256339 MER72B 755 + 508 755 155382 6 6 0 34 94 95 112 chain 7373 chr6 171115067 + 135425418 135425567 MER45A 178 - 24 174 174955 80 39 40 9 2 0 5 0 2 14 chain 102782 chr6 171115067 + 135433558 135435007 L1PB1 5432 + 4012 5423 36055 187 4 5 65 0 3 355 4 0 375 9 6 95 1 2 11 5 0 22 1 0 4 3 2 14 5 1 9 2 0 46 8 7 16 1 0 44 1 0 12 27 16 15 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 12 1 0 7 chain 8495 chr6 171115067 + 135441103 135441224 L1PA8 5853 - 17 136 168317 76 2 1 18 2 1 23 chain 6832 chr6 171115067 + 135448871 135448978 L1PB1 5432 + 5173 5279 178712 47 2 1 16 1 0 21 3 4 17 chain 6023 chr6 171115067 + 135449063 135449142 L1PB1 5432 + 5346 5422 185033 24 1 0 23 1 0 11 1 0 18 chain 3923 chr6 171115067 + 135466337 135466388 MER41B 635 + 494 547 208523 31 0 2 20 chain 535183 chr6 171115067 + 135471491 135477929 L1PA7 6471 - 1 6471 3573 12 2 0 149 10 12 31 0 2 252 0 4 6 4 0 381 1 0 205 1 0 431 1 0 314 0 1 550 9 10 427 1 0 109 0 1 149 0 1 596 0 2 193 4 2 352 0 17 119 0 1 156 0 1 525 1 2 174 11 12 63 7 1 320 0 7 22 1 2 113 0 2 337 8 9 262 4 8 125 chain 11418 chr6 171115067 + 135499711 135499875 MER30 238 + 41 233 154609 65 14 32 45 0 10 40 chain 3545 chr6 171115067 + 135499955 135499998 MER58C 217 + 64 107 214635 43 chain 23064 chr6 171115067 + 135549404 135549693 AluSp 311 - 11 303 115330 109 0 2 62 7 8 111 chain 4059 chr6 171115067 + 135560436 135560499 LTR16A2 485 - 96 149 206508 8 9 0 12 1 0 33 chain 44874 chr6 171115067 + 135567700 135568239 MER41A 554 - 9 554 63202 72 0 5 375 0 1 92 chain 61245 chr6 171115067 + 135568699 135569466 LTR17 781 + 0 781 52232 20 0 10 273 18 0 24 1 0 366 0 23 65 chain 9169 chr6 171115067 + 135571217 135571320 LTR7Y 441 - 17 120 164707 103 chain 24796 chr6 171115067 + 135582287 135582587 AluY 311 + 0 295 105905 123 9 4 168 chain 3286 chr6 171115067 + 135582592 135582634 MER96B 391 + 312 354 219263 42 chain 4757 chr6 171115067 + 135585503 135585670 MER53 195 + 39 193 197833 19 94 81 54 chain 42967 chr6 171115067 + 135597470 135598054 L1PB3 3668 + 2576 3171 65452 91 1 0 162 3 8 68 3 7 66 0 1 8 2 0 18 0 2 76 3 5 83 chain 8903 chr6 171115067 + 135599924 135600037 L1PA8 5853 + 5741 5853 166125 19 2 1 92 chain 4098 chr6 171115067 + 135648261 135648323 MLT1B 390 + 314 380 205980 18 5 9 39 chain 5519 chr6 171115067 + 135665932 135665997 MER41B 635 - 86 152 189855 37 0 1 28 chain 4820 chr6 171115067 + 135683480 135683561 MADE1 96 - 0 96 197119 33 10 25 38 chain 9873 chr6 171115067 + 135683561 135684156 L1PB1 5432 - 508 1113 37458 109 0 8 135 8 1 41 0 1 118 0 4 32 0 4 152 chain 164134 chr6 171115067 + 135684208 135686081 SVA_D 2077 - 21 2077 22789 656 10 18 30 1 2 32 0 1 70 50 0 156 0 183 144 0 40 724 chain 3893 chr6 171115067 + 135685007 135685057 SVA_D 2077 - 957 1057 101648 33 0 50 17 chain 19729 chr6 171115067 + 135688241 135689430 L1PB1 5432 - 4208 5415 37458 225 0 3 151 0 2 69 8 12 18 212 217 205 23 21 26 17 19 38 15 23 54 8 10 104 6 0 10 chain 15045 chr6 171115067 + 135696001 135696190 MER47A 366 + 86 275 141194 189 chain 62255 chr6 171115067 + 135735954 135736641 L1PA3long 6157 - 0 688 51774 126 0 1 561 chain 5251 chr6 171115067 + 135768989 135769149 MER58A 224 + 45 207 192506 34 87 89 39 chain 69723 chr6 171115067 + 135789762 135790693 L1PA10 4194 + 2710 4161 48509 240 12 5 186 8 4 55 3 4 234 0 3 28 0 531 116 3 0 34 1 0 11 chain 30296 chr6 171115067 + 135792868 135793186 AluYb9 318 + 0 318 83941 318 chain 5254 chr6 171115067 + 135795673 135795738 HY1 111 - 36 101 192469 65 chain 28246 chr6 171115067 + 135805069 135805435 THE1B 368 - 0 368 92130 98 1 4 93 2 1 172 chain 199450 chr6 171115067 + 135830588 135832782 L1PA3long 6157 - 15 2206 19247 292 3 0 1083 0 1 131 1 0 684 chain 143202 chr6 171115067 + 135832782 135834384 L1PA3long 6157 + 2339 3939 25584 751 0 1 74 9 6 768 chain 3969 chr6 171115067 + 135860196 135860245 Kanga1d 558 + 410 459 207859 49 chain 113624 chr6 171115067 + 135862925 135864665 L1PA14 3548 + 1713 3446 33196 179 0 3 80 0 1 81 10 10 51 0 11 119 0 1 224 0 3 59 2 1 147 8 5 205 52 49 11 2 0 33 16 14 5 2 0 105 12 8 13 2 0 5 6 5 80 1 0 16 6 11 80 23 18 33 4 2 10 2 1 6 1 0 13 5 4 31 chain 10019 chr6 171115067 + 135875594 135875705 L1PA2 6032 + 5912 6023 160486 111 chain 386741 chr6 171115067 + 135881389 135886457 L1PA8 5853 - 0 5081 10558 93 1 0 18 1 0 36 36 39 57 2 0 46 1 0 278 0 3 276 0 1 343 2 0 522 0 1 4 1 0 412 0 1 178 7 8 137 1 2 81 1 0 5 0 1 8 0 3 79 0 1 311 8 9 11 2 1 17 15 6 337 3 36 9 18 0 457 2 0 114 1 0 177 2 0 249 12 13 137 0 2 224 8 9 176 14 15 138 chain 4590 chr6 171115067 + 135912824 135912874 L1PB4 2604 - 52 102 199742 50 chain 402654 chr6 171115067 + 135915533 135921309 L1PB1 5432 - 12 5401 10007 16 1 0 13 1 0 21 1 0 11 22 20 7 1 0 4 1 0 4 1 0 15 15 7 6 3 0 16 1 0 40 8 7 12 2 1 33 0 1 12 7 5 10 2 0 3 2 0 9 1 0 13 1 0 20 7 0 9 1 2 446 0 1 30 5 1 30 0 1 245 18 12 376 332 0 199 1 2 9 0 1 12 0 6 405 0 1 47 9 0 250 6 1 13 15 1 172 1 0 161 1 0 164 2 0 131 8 9 319 11 26 320 2 0 315 14 0 424 9 6 13 9 8 37 6 7 42 1 2 72 6 10 51 4 9 20 2 1 137 6 7 7 1 0 133 0 2 8 1 0 102 0 1 77 5 7 38 5 6 139 chain 5041 chr6 171115067 + 135925027 135925218 MER52A 1651 + 781 914 194723 9 1 0 47 116 59 18 chain 5796 chr6 171115067 + 135929716 135929782 L1PA8 5853 - 0 66 187182 66 chain 59088 chr6 171115067 + 135946704 135947532 LTR12 884 - 4 884 53339 232 102 0 265 0 154 229 chain 3305 chr6 171115067 + 135946975 135947031 LTR12 884 - 276 332 218864 28 6 6 22 chain 26761 chr6 171115067 + 135970229 135970582 THE1B 368 - 0 368 97120 166 1 0 137 5 21 44 chain 51309 chr6 171115067 + 135971711 135972335 THE1B-int 1605 + 978 1605 58103 96 1 4 527 chain 26886 chr6 171115067 + 135972335 135972669 THE1B 368 + 0 345 96684 15 2 0 29 0 15 143 2 0 143 chain 58066 chr6 171115067 + 135999323 136000000 L1PA7 6471 - 1 677 53944 162 1 0 514 chain 10699 chr6 171115067 + 136009312 136009440 THE1A 353 - 0 128 157424 128 chain 180674 chr6 171115067 + 136040393 136042553 L1PA7 6471 + 4273 6465 20924 75 0 3 366 1 11 227 1 0 133 1 7 151 7 0 9 6 25 340 0 4 438 0 1 247 1 0 148 2 0 7 chain 29286 chr6 171115067 + 136044139 136044518 THE1B-int 1605 + 1220 1596 87635 68 14 11 194 0 1 64 1 0 38 chain 123420 chr6 171115067 + 136046536 136048106 THE1B-int 1605 + 0 1605 29909 19 0 1 410 1 26 351 0 1 100 0 3 5 0 1 300 0 3 222 4 5 84 0 1 31 1 0 42 chain 28266 chr6 171115067 + 136058108 136058470 THE1B 368 - 0 368 92056 49 0 10 5 3 0 140 1 0 164 chain 12820 chr6 171115067 + 136067601 136067793 L1PA8 5853 + 5658 5853 148973 21 2 0 11 1 0 49 5 4 17 1 0 43 0 8 42 chain 31801 chr6 171115067 + 136076904 136077302 MLT2A1 477 + 0 397 81166 168 5 2 12 0 1 19 0 1 194 chain 539310 chr6 171115067 + 136086607 136092647 L1PA3long 6157 - 1 6157 2927 146 0 1 695 0 4 523 22 0 529 0 1 1079 2 1 2012 7 10 251 0 128 520 5 6 97 0 1 152 chain 25280 chr6 171115067 + 136113367 136113657 L1PA5 6144 - 0 290 103316 290 chain 58723 chr6 171115067 + 136137025 136137780 MER4E 760 - 0 760 53570 230 1 0 53 7 8 37 2 1 63 5 7 233 0 4 124 chain 22294 chr6 171115067 + 136185940 136186197 L1PA5 6144 - 9 267 118933 181 0 1 76 chain 32961 chr6 171115067 + 136207880 136208429 L1PB2 3958 - 120 658 79273 63 2 1 21 3 1 70 2 1 64 1 0 47 3 4 19 18 18 77 4 0 14 13 14 50 3 0 6 3 0 7 1 0 12 5 6 34 0 2 7 chain 39186 chr6 171115067 + 136214212 136214651 L1PA4 6152 - 0 444 70477 6 0 5 433 chain 17584 chr6 171115067 + 136214651 136214839 L1PA4 6152 + 5491 5679 134041 188 chain 20080 chr6 171115067 + 136220038 136220393 THE1B 368 + 0 368 126889 47 32 39 22 8 9 52 1 0 21 17 25 17 1 0 7 5 4 125 chain 13740 chr6 171115067 + 136233464 136233666 MER2 342 + 135 329 145467 25 9 0 134 4 5 30 chain 8296 chr6 171115067 + 136299555 136299813 Tigger3b 1229 - 394 645 169428 53 121 103 28 5 10 13 0 6 38 chain 81975 chr6 171115067 + 136299857 136300757 L1PA3long 6157 - 1842 2743 42771 243 0 1 657 chain 165232 chr6 171115067 + 136300757 136302583 L1PA3long 6157 + 4320 6155 22621 179 0 4 800 0 8 806 3 0 38 chain 14417 chr6 171115067 + 136313245 136313455 MER30 238 - 0 220 143162 33 9 6 77 4 17 87 chain 513675 chr6 171115067 + 136321864 136327506 L1PA3long 6157 + 518 6157 5813 5634 3 0 5 chain 176897 chr6 171115067 + 136328981 136330954 L1PA4 6152 - 9 1984 21262 1786 1 3 186 chain 25039 chr6 171115067 + 136338481 136338768 L1PA5 6144 - 0 289 104602 147 0 1 110 0 1 30 chain 5561 chr6 171115067 + 136341303 136341417 L1M3e 1964 - 1851 1959 189466 65 33 27 16 chain 150456 chr6 171115067 + 136374210 136375894 L1PA4 6152 - 12 1702 24545 156 1 2 674 0 4 260 0 1 593 chain 3933 chr6 171115067 + 136407530 136407591 LTR9B 643 - 105 179 208366 18 9 22 34 chain 238902 chr6 171115067 + 136419918 136422732 L1PA6 6164 - 2 2830 16837 846 0 3 653 4 5 269 0 4 35 0 1 164 0 1 118 1 2 110 0 3 614 chain 30883 chr6 171115067 + 136447506 136448075 L1PB1 5432 + 4881 5420 82715 222 1 2 8 4 1 24 1 0 9 1 0 9 9 5 7 2 0 52 2 1 16 1 0 39 90 73 8 0 2 10 2 1 21 1 0 13 1 0 16 chain 19445 chr6 171115067 + 136451833 136452191 THE1B 368 - 0 367 128836 56 7 6 20 0 2 34 79 85 48 8 10 106 chain 6422 chr6 171115067 + 136454297 136454365 L1PA3long 6157 + 6074 6142 181848 68 chain 375231 chr6 171115067 + 136460117 136464327 L1PA4 6152 - 9 4242 10910 1580 0 1 62 0 1 141 0 4 1000 0 2 66 1 0 27 0 9 87 5 7 583 0 4 325 0 1 333 chain 3050 chr6 171115067 + 136464606 136464642 MER96B 391 + 90 126 224004 36 chain 112498 chr6 171115067 + 136483688 136485193 THE1C-int 1605 - 11 1583 33539 62 0 1 95 0 1 194 2 1 7 0 6 11 0 1 101 1 0 156 21 22 123 0 1 60 6 0 38 15 9 8 0 6 21 1 0 98 0 3 113 4 11 268 0 55 100 chain 27314 chr6 171115067 + 136485205 136485577 THE1C 375 - 0 375 95228 181 7 9 5 1 0 66 7 9 105 chain 22825 chr6 171115067 + 136488436 136488784 THE1B 368 + 0 368 116469 44 20 39 41 12 16 29 1 0 31 12 10 158 chain 107161 chr6 171115067 + 136492777 136493967 L1PA3long 6157 - 0 1194 34927 845 1 5 344 chain 57950 chr6 171115067 + 136493967 136494600 L1PA3long 6157 + 4321 4955 53953 344 0 1 289 chain 16284 chr6 171115067 + 136529517 136529797 THE1B 368 - 61 368 137520 64 2 1 12 17 42 12 0 1 6 2 0 99 17 23 32 2 0 15 chain 224698 chr6 171115067 + 136543162 136546592 L1PA8A 6298 + 3483 6291 17619 124 0 2 107 6 16 132 21 13 504 304 0 235 0 1 28 14 7 31 0 4 8 0 1 128 324 0 105 0 3 557 3 1 138 7 6 45 0 3 609 chain 4288 chr6 171115067 + 136564495 136564550 Tigger3b 1229 + 273 327 203372 18 1 0 36 chain 18820 chr6 171115067 + 136569428 136569784 THE1B 368 + 0 368 130611 47 41 48 16 16 17 41 6 5 24 0 3 8 1 5 18 10 8 128 chain 4665 chr6 171115067 + 136584237 136584343 MIR 256 - 76 186 198904 19 37 41 50 chain 25423 chr6 171115067 + 136623295 136623591 AluSx4 309 + 8 305 102582 21 0 1 275 chain 41850 chr6 171115067 + 136624443 136624979 MLT2A2 560 + 0 551 66829 13 0 3 163 0 1 224 2 13 134 chain 5458 chr6 171115067 + 136649160 136649220 L1PA8 5853 + 5793 5853 190437 60 chain 22316 chr6 171115067 + 136651577 136651849 AluSc5 308 - 14 297 118846 31 0 11 241 chain 53819 chr6 171115067 + 136655478 136656255 LTR1 825 + 13 809 56468 29 1 2 220 54 26 9 0 18 61 7 6 22 1 14 157 1 0 12 0 4 14 0 11 42 0 3 79 1 0 67 chain 37377 chr6 171115067 + 136712296 136712693 L1HS 6032 + 5626 6023 72994 397 chain 40020 chr6 171115067 + 136722472 136722929 L1PA5 6144 + 5687 6144 69291 457 chain 28698 chr6 171115067 + 136723763 136724073 AluYk4 311 + 1 311 90335 310 chain 20278 chr6 171115067 + 136771690 136771933 AluSp 311 + 50 293 126284 243 chain 109123 chr6 171115067 + 136799621 136801546 L1MA3 4352 + 1266 3141 34411 78 4 0 16 10 14 94 5 10 30 5 6 14 1 0 117 7 6 32 20 17 30 99 47 8 18 0 144 7 11 24 20 26 62 0 1 260 19 18 71 1 0 42 4 11 44 82 80 4 1 0 6 7 0 7 0 7 38 18 22 58 7 0 6 7 15 15 1 2 382 chain 29168 chr6 171115067 + 136806693 136806999 AluYa5 310 - 4 310 88211 306 chain 9042 chr6 171115067 + 136816650 136816771 Tigger4a 237 - 117 237 165370 5 1 0 115 chain 37026 chr6 171115067 + 136818369 136819170 PRIMA4_LTR 623 + 92 600 73486 55 1 0 41 0 1 69 1 0 4 6 2 19 0 1 79 0 2 16 9 3 9 283 0 52 1 0 88 1 0 67 chain 22137 chr6 171115067 + 136818682 136818961 AluSg 306 + 27 306 119635 20 7 6 196 0 1 56 chain 50939 chr6 171115067 + 136834328 136835440 Tigger1 2417 - 376 1050 58348 65 1 4 173 6 9 185 444 0 238 chain 22760 chr6 171115067 + 136854145 136854402 AluSp 311 + 17 274 116780 257 chain 32230 chr6 171115067 + 136856885 136857265 L1PA5 6144 - 1 385 80469 10 3 1 361 0 6 6 chain 26184 chr6 171115067 + 136895821 136896126 AluYf5 307 - 4 307 99265 39 6 4 260 chain 25762 chr6 171115067 + 136905456 136905828 THE1B 368 - 0 368 101033 18 3 0 5 5 9 43 1 0 91 2 0 34 19 17 151 chain 33288 chr6 171115067 + 136907767 136908211 MLT2A1 477 + 0 477 78751 168 5 2 9 0 1 24 1 0 5 0 2 174 6 0 8 7 47 37 chain 4291 chr6 171115067 + 136911605 136911664 MER6A 605 + 51 107 203343 16 3 0 40 chain 25667 chr6 171115067 + 136912027 136912391 THE1B 368 + 0 368 101417 169 13 12 17 0 3 12 1 5 14 1 0 7 5 4 125 chain 3743 chr6 171115067 + 136942144 136942191 MADE1 96 - 1 85 211285 38 0 37 9 chain 4104 chr6 171115067 + 136951387 136951436 5S 121 + 10 59 205875 49 chain 4128 chr6 171115067 + 136961358 136961499 MER58A 224 - 16 171 205542 26 1 0 9 73 88 32 chain 6494 chr6 171115067 + 137000928 137001142 L1MB3 1562 + 1080 1290 181304 15 100 98 8 1 0 38 6 5 46 chain 23800 chr6 171115067 + 137002790 137003068 AluY 311 + 18 294 111476 111 2 0 165 chain 184391 chr6 171115067 + 137007382 137009570 L1PA7 6471 + 4280 6469 20552 1342 0 2 107 9 10 97 6 7 112 0 1 438 6 4 59 2 0 10 chain 9581 chr6 171115067 + 137016041 137016157 L1MB8 1703 + 1469 1585 162688 116 chain 2852 chr6 171115067 + 137054946 137054982 L1MC1 2226 - 37 72 227824 5 1 0 30 chain 10239 chr6 171115067 + 137069450 137069577 MER85 139 + 2 139 159425 87 0 10 40 chain 12347 chr6 171115067 + 137080941 137081092 LTR7B 505 - 64 215 150841 42 0 1 36 1 0 72 chain 6245 chr6 171115067 + 137128675 137128742 THE1B 368 + 1 68 183213 67 chain 109771 chr6 171115067 + 137136218 137137438 L1PA3long 6157 - 0 1211 34265 720 8 0 54 1 0 437 chain 10074 chr6 171115067 + 137137457 137137566 L1PA3long 6157 - 4 113 160203 109 chain 24784 chr6 171115067 + 137144752 137145036 AluSp 311 + 6 290 105972 284 chain 361604 chr6 171115067 + 137167481 137171657 L1PA5 6144 - 0 4163 11324 63 11 9 388 7 9 28 0 1 20 1 0 354 3 1 1013 0 3 228 7 0 352 1 0 505 1 0 813 7 4 39 3 1 332 chain 113792 chr6 171115067 + 137172137 137173351 L1HS 6032 - 0 1214 33151 1214 chain 84654 chr6 171115067 + 137173357 137174259 L1HS 6032 + 3926 4828 41654 902 chain 19792 chr6 171115067 + 137181588 137181811 L1PA4 6152 + 5924 6152 127845 217 0 5 6 chain 193009 chr6 171115067 + 137197481 137199761 L1PA7 6471 - 4 2326 19772 57 1 0 228 0 1 570 0 24 250 0 1 315 0 11 61 1 0 691 0 1 32 3 9 71 chain 24557 chr6 171115067 + 137225576 137225945 THE1B 368 + 0 368 107211 166 7 6 22 18 10 102 17 25 37 chain 7704 chr6 171115067 + 137255914 137256002 HY3 101 + 12 100 172906 88 chain 3262 chr6 171115067 + 137271342 137271399 L1MC1 2226 + 2129 2184 219749 6 1 0 14 6 5 30 chain 5704 chr6 171115067 + 137279546 137279618 LTR1D 973 - 296 367 188070 12 1 0 59 chain 28505 chr6 171115067 + 137281067 137281514 LTR2 463 + 0 462 91168 55 0 3 152 23 23 16 0 12 85 52 53 8 1 0 55 chain 17758 chr6 171115067 + 137362965 137363175 L1PA7 6471 - 14 225 133545 141 0 1 69 chain 27976 chr6 171115067 + 137381436 137381833 LTR7 482 - 13 482 93088 36 12 14 125 0 31 35 3 4 109 8 46 69 chain 29293 chr6 171115067 + 137382244 137382559 AluYb8 318 + 0 318 87609 189 0 3 126 chain 303015 chr6 171115067 + 137383950 137387844 HERVH-int 3825 - 0 3825 13280 87 6 11 101 0 2 181 34 35 384 0 1 207 5 0 715 10 15 306 0 1 121 0 4 184 1 0 13 0 2 24 9 0 183 9 12 198 15 0 259 1 0 19 125 0 61 12 11 32 22 0 22 1 89 14 1 0 197 2 1 333 chain 4740 chr6 171115067 + 137387030 137387092 HERVH-int 3825 - 3221 3340 198024 14 1 58 47 chain 27318 chr6 171115067 + 137387852 137388258 LTR7 482 - 6 482 95211 37 21 20 140 1 2 13 8 40 109 8 46 69 chain 541553 chr6 171115067 + 137390972 137397447 L1PA7 6471 + 0 6469 2581 122 1 0 198 2 3 86 1 2 417 0 1 139 0 3 296 0 1 81 1 0 208 1 0 4 0 1 508 0 1 89 0 4 101 1 0 334 0 1 34 16 0 452 5 19 130 4 0 320 2 1 650 2 0 534 0 1 861 0 4 8 0 3 69 20 5 7 0 2 761 2 0 8 chain 70887 chr6 171115067 + 137399936 137401323 L1PB1 5432 - 9 1076 47968 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 5 3 15 17 7 6 2 0 15 1 0 45 18 16 52 3 1 8 2 0 3 2 0 12 1 0 10 1 0 4 32 13 12 280 2 185 7 8 136 1 0 69 0 2 77 3 0 151 0 4 46 1 7 62 chain 44926 chr6 171115067 + 137429481 137429994 MER9a3 513 - 0 513 63141 513 chain 47006 chr6 171115067 + 137440432 137441116 LTR76 689 + 7 687 61206 14 1 11 17 1 0 71 8 7 270 2 1 93 0 1 17 16 1 62 0 1 31 8 9 24 20 21 29 chain 157376 chr6 171115067 + 137448713 137451038 L1PB1 5432 - 10 2312 23680 18 1 0 11 1 0 23 1 0 24 2 0 14 9 6 18 46 33 39 1 0 13 7 6 44 7 5 9 2 0 3 2 0 9 3 5 8 1 0 20 3 0 8 14 15 173 7 8 79 0 1 24 0 9 152 0 1 16 3 0 323 0 1 79 5 6 20 0 1 192 1 0 12 2 1 6 0 1 19 6 5 228 27 15 183 5 16 52 2 1 322 1 0 25 chain 10899 chr6 171115067 + 137476424 137476586 MSTC 436 - 6 160 156591 18 0 1 76 21 12 47 chain 39032 chr6 171115067 + 137484017 137484504 HERV1_LTRc 486 + 0 486 70688 35 3 0 59 1 0 314 5 13 12 5 0 53 chain 37909 chr6 171115067 + 137491390 137491862 HERV1_LTRc 486 + 0 486 72272 394 1 17 18 5 0 19 0 3 35 chain 16938 chr6 171115067 + 137500600 137500814 LTR43 600 + 163 377 135755 214 chain 9877 chr6 171115067 + 137501860 137501999 MER61D 487 - 236 374 161188 47 11 10 81 chain 28671 chr6 171115067 + 137520013 137520426 MLT2A1 477 + 0 399 90448 169 4 1 9 0 1 24 0 1 84 1 0 4 7 8 50 1 2 20 11 1 11 4 0 14 chain 25667 chr6 171115067 + 137528591 137528944 THE1A 353 + 0 353 101416 110 1 0 59 1 2 11 1 0 51 7 8 112 chain 125389 chr6 171115067 + 137528944 137530501 THE1A-int 1579 + 0 1577 29282 114 0 1 12 0 8 9 6 3 76 0 1 444 0 1 331 0 1 75 12 23 478 chain 6539 chr6 171115067 + 137530503 137530613 THE1A 353 + 0 109 180929 13 3 1 67 3 4 24 chain 18760 chr6 171115067 + 137530615 137530858 THE1A 353 + 110 353 130802 92 1 0 31 11 12 108 chain 9282 chr6 171115067 + 137566134 137566249 MER34B 572 + 402 517 164160 115 chain 70277 chr6 171115067 + 137575273 137576218 MER11A 1151 + 0 1146 48280 55 0 99 45 2 0 7 1 3 85 0 11 83 0 1 144 3 5 21 1 0 61 0 94 31 0 4 56 19 18 33 13 10 35 3 0 186 1 0 49 2 1 9 chain 30301 chr6 171115067 + 137581524 137581906 MER51B 395 + 0 395 83909 245 1 0 112 0 14 24 chain 30753 chr6 171115067 + 137623967 137624338 THE1C 375 + 0 372 82951 293 1 3 53 1 0 23 chain 43400 chr6 171115067 + 137626247 137626754 MER9a2 513 - 0 513 64938 146 0 1 146 0 5 215 chain 10482 chr6 171115067 + 137657413 137657595 L1MC2 1988 - 151 333 158321 78 0 1 21 4 0 33 30 33 16 chain 9285 chr6 171115067 + 137658719 137658830 L1PA8 5853 + 5743 5853 164142 17 1 0 93 chain 11165 chr6 171115067 + 137669659 137669803 MER2 342 + 149 293 155569 144 chain 26438 chr6 171115067 + 137698674 137698979 AluYk4 311 + 0 304 98278 131 1 0 173 chain 23244 chr6 171115067 + 137707725 137708074 THE1B 368 - 0 368 114468 56 7 6 35 0 10 21 32 42 198 chain 4581 chr6 171115067 + 137708074 137708131 MLT1B 390 + 313 371 199853 31 0 1 26 chain 66697 chr6 171115067 + 137728261 137729294 L1PA14 3548 - 99 1117 49789 34 1 0 10 8 7 6 2 0 15 4 2 34 5 1 8 1 0 106 7 6 52 0 2 29 1 0 6 23 17 62 0 6 41 18 14 38 2 0 14 8 6 62 2 1 182 1 0 74 0 2 29 0 1 43 1 0 87 0 4 17 chain 47061 chr6 171115067 + 137729675 137730209 L1PA5 6144 - 0 534 61152 534 chain 22311 chr6 171115067 + 137740432 137740742 AluY 311 + 0 290 118869 57 31 1 29 1 11 192 chain 46532 chr6 171115067 + 137777606 137778119 MER9a1 513 + 0 513 61568 513 chain 7081 chr6 171115067 + 137798367 137798529 MLT1C 463 + 76 236 176880 47 27 23 16 8 7 15 0 4 11 6 5 32 chain 4339 chr6 171115067 + 137829781 137829834 L1MB2 1706 + 1457 1510 202723 53 chain 23641 chr6 171115067 + 137847737 137848110 L1PA8 5853 + 5468 5842 112350 40 13 21 35 1 0 37 9 7 71 1 0 8 2 1 52 2 1 10 1 0 9 2 1 39 1 2 40 chain 391261 chr6 171115067 + 137874843 137881043 L1PB1 5432 - 12 5413 10418 16 1 0 13 1 0 21 1 0 16 11 9 13 1 0 4 3 1 17 12 3 7 2 0 4 1 0 16 1 0 43 8 39 31 2 0 9 10 6 5 1 0 11 1 0 20 20 154 146 1 4 58 1 0 129 1 0 4 3 1 74 0 1 34 0 14 225 0 3 124 324 0 292 0 4 117 3 6 54 20 17 48 0 1 233 1 0 4 0 1 131 0 1 21 3 4 205 0 1 163 1 0 6 1 0 154 2 1 96 0 1 4 1 0 55 1 2 30 0 1 4 14 10 331 314 0 154 8 4 284 313 0 91 2 0 8 0 5 204 8 0 500 8 5 5 0 3 155 4 7 58 0 1 256 0 1 4 1 0 348 1 2 33 chain 6258 chr6 171115067 + 137884410 137884489 L1PA16 3655 + 2218 2297 183108 79 chain 9996 chr6 171115067 + 137918580 137918712 L1PB4 2604 + 2370 2500 160600 16 2 0 114 chain 3438 chr6 171115067 + 137931484 137931520 LTR40a 516 + 403 439 216443 36 chain 3380 chr6 171115067 + 137944586 137944623 MER51A 677 + 199 236 217497 37 chain 2989 chr6 171115067 + 137947561 137947594 MADE1 96 - 63 96 225247 33 chain 36706 chr6 171115067 + 137964126 137964616 L1PA11 4918 + 4004 4499 73951 60 2 3 257 0 10 59 2 1 19 0 1 43 3 0 18 2 0 12 2 1 11 chain 149283 chr6 171115067 + 137974791 137976970 MER61-int 3695 + 0 2125 24720 28 22 8 10 1 0 120 8 9 23 115 74 53 7 0 86 15 1 60 0 1 22 1 2 4 1 0 141 5 15 197 2 0 19 1 0 92 0 13 70 9 10 286 1 0 52 0 4 4 0 1 15 0 2 27 0 1 113 15 9 208 0 1 5 6 5 313 1 0 21 chain 118697 chr6 171115067 + 138003667 138005035 L1PA6 6164 - 11 1378 31532 1129 1 0 238 chain 28238 chr6 171115067 + 138040064 138040390 LTR17 781 - 455 781 92164 326 chain 240047 chr6 171115067 + 138040704 138043839 HERV17-int 4347 - 0 2804 16776 22 38 24 128 0 1 1264 1 0 1138 0 5 18 2 1 133 321 0 70 chain 29054 chr6 171115067 + 138043459 138043769 AluYa5 310 - 0 310 88740 310 chain 19703 chr6 171115067 + 138094911 138095155 AluSc 308 + 57 300 128083 52 2 1 190 chain 21929 chr6 171115067 + 138110015 138110280 AluY 311 + 28 291 120503 105 3 1 157 chain 4332 chr6 171115067 + 138117062 138117123 L1MC1 2226 - 179 234 202801 31 6 0 24 chain 124442 chr6 171115067 + 138135016 138136408 L1PA4 6152 - 0 1400 29559 6 0 7 969 0 1 417 chain 389536 chr6 171115067 + 138158490 138163941 L1PB1 5432 - 28 5406 10466 13 1 0 14 0 1 6 1 0 20 27 31 11 15 6 6 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 3 0 11 1 0 50 2 1 5 0 1 130 30 0 289 3 0 369 4 0 248 0 1 56 1 3 207 17 22 21 4 9 188 0 1 451 40 0 78 6 7 10 17 21 46 0 3 44 1 0 92 8 11 5 2 0 231 16 9 418 4 5 43 3 0 6 0 3 149 8 9 184 4 8 28 11 23 6 1 0 194 33 23 283 0 1 547 2 1 154 1 2 6 1 0 159 3 4 145 11 15 19 6 7 26 chain 66142 chr6 171115067 + 138165605 138166478 LTR5_Hs 974 + 0 974 50029 169 1 0 116 0 1 194 1 92 80 5 4 163 8 15 31 8 6 17 0 6 80 chain 20374 chr6 171115067 + 138177285 138177653 THE1B 368 + 0 368 125982 111 22 24 39 72 70 124 chain 8760 chr6 171115067 + 138183316 138183418 L1PA5 6144 + 6042 6144 166865 102 chain 506439 chr6 171115067 + 138205854 138212581 L1PA7 6471 - 3 6061 6439 153 1 0 257 0 1 47 7 0 195 315 8 177 0 4 671 346 1 603 12 15 377 0 2 24 0 1 103 1 0 294 8 6 774 4 7 103 32 6 135 0 7 1001 1 4 340 4 1 151 0 1 388 1 0 143 1 0 58 chain 27258 chr6 171115067 + 138207694 138208019 L1PA7 6471 - 664 993 95408 180 0 4 145 chain 30464 chr6 171115067 + 138304930 138305314 L1PA5 6144 - 1 385 83502 154 12 11 196 0 1 22 chain 473445 chr6 171115067 + 138305314 138310869 L1PA4 6152 - 11 5579 7931 102 0 1 140 1 0 80 0 1 647 0 1 507 1 2 422 0 1 1060 1 0 469 5 0 10 0 5 491 3 4 181 0 1 801 46 37 343 0 17 245 chain 2762 chr6 171115067 + 138326406 138326499 MER5A1 166 - 74 166 229306 17 2 3 21 39 37 14 chain 26440 chr6 171115067 + 138336257 138336746 L1PB1 5432 - 12 466 98267 16 1 0 12 1 0 20 5 4 22 2 0 15 1 0 4 2 0 19 17 6 6 3 0 28 6 4 26 2 1 16 2 1 52 2 0 9 7 3 10 1 0 8 1 0 24 3 0 6 4 5 32 2 3 102 chain 23067 chr6 171115067 + 138341091 138341363 AluY 311 + 7 306 115315 126 2 0 92 0 29 52 chain 121835 chr6 171115067 + 138367809 138369372 THE1B-int 1605 - 9 1605 30433 297 3 0 67 1 11 432 26 27 306 1 26 430 chain 27752 chr6 171115067 + 138369372 138369726 THE1B 368 - 0 368 93859 192 1 0 117 0 15 44 chain 56908 chr6 171115067 + 138370673 138371330 L1PA3long 6157 - 0 659 54589 138 0 7 10 1 0 7 9 4 474 0 1 18 chain 123276 chr6 171115067 + 138371330 138372845 L1P1 4361 - 2251 3763 29951 796 9 10 96 28 31 476 7 0 103 chain 48450 chr6 171115067 + 138379728 138380550 L1PB1 5432 + 4639 5426 60148 69 1 0 96 1 0 85 0 2 212 15 11 21 1 0 21 2 0 3 2 0 9 12 10 39 7 6 10 7 6 42 1 0 15 67 50 24 1 0 22 1 0 12 1 0 18 1 0 4 chain 125961 chr6 171115067 + 138395027 138396926 THE1B-int 1605 + 0 1605 29112 432 8 35 31 25 23 174 1 2 76 320 0 832 chain 11130 chr6 171115067 + 138424671 138424848 MER1A 529 - 0 196 155700 32 25 46 65 2 0 53 chain 28062 chr6 171115067 + 138440387 138440742 THE1B 368 + 0 368 92784 41 1 16 111 1 0 192 1 0 8 chain 95831 chr6 171115067 + 138446062 138447442 L1PREC2 3366 + 1702 3051 37868 13 0 4 50 0 3 564 0 1 230 3 0 5 1 0 10 0 4 141 0 1 24 2 0 47 12 11 38 92 74 30 3 0 11 22 8 32 9 7 41 chain 23858 chr6 171115067 + 138456243 138456522 AluY 311 + 6 286 111136 126 0 1 153 chain 24231 chr6 171115067 + 138515129 138515423 AluSx1 309 + 1 301 109040 43 3 9 248 chain 24759 chr6 171115067 + 138517983 138518269 AluSp 311 - 25 311 106115 286 chain 63863 chr6 171115067 + 138520611 138521372 L1PB1 5432 - 1552 2316 50957 148 1 4 612 chain 113954 chr6 171115067 + 138521372 138522951 L1PB1 5432 + 3877 5424 33104 744 0 1 109 0 3 71 36 36 262 1 2 9 3 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 8 5 10 3 0 7 14 5 19 8 5 14 2 0 24 1 0 20 5 4 5 1 0 21 1 0 4 chain 51930 chr6 171115067 + 138533520 138534155 L1PA6 6164 + 5520 6162 57663 120 9 1 361 3 17 96 13 14 33 chain 24139 chr6 171115067 + 138534160 138534443 AluY 311 + 17 301 109524 115 0 1 168 chain 19570 chr6 171115067 + 138537117 138537401 AluSp 311 - 18 302 128460 12 8 4 89 0 1 59 2 0 21 6 5 45 5 11 37 chain 15073 chr6 171115067 + 138543292 138543514 MER30 238 - 0 238 141104 110 15 32 79 2 1 16 chain 24578 chr6 171115067 + 138595659 138595949 AluSp 311 + 5 299 107091 31 0 1 54 0 3 205 chain 2906 chr6 171115067 + 138621791 138621824 MADE1 96 - 63 96 226942 33 chain 22303 chr6 171115067 + 138642961 138643588 THE1B 368 - 1 361 118903 48 5 13 87 0 1 30 319 22 32 0 6 69 0 15 37 chain 5958 chr6 171115067 + 138643595 138643679 L1MA3 4352 + 3830 3914 185609 43 0 2 7 2 0 32 chain 30706 chr6 171115067 + 138650954 138651355 LTR7 482 - 0 482 83023 158 0 10 20 0 31 38 0 1 49 0 1 59 9 47 68 chain 4222 chr6 171115067 + 138668973 138669023 MADE1 96 + 45 96 204268 18 0 1 32 chain 131403 chr6 171115067 + 138676760 138678243 L1PA4 6152 - 1 1497 27777 10 0 1 127 0 7 700 1 5 241 1 2 403 chain 80552 chr6 171115067 + 138678243 138679132 L1PA4 6152 + 3782 4671 43234 889 chain 91509 chr6 171115067 + 138684713 138685768 L1PA5 6144 - 2 1063 38966 470 0 2 375 0 4 210 chain 356990 chr6 171115067 + 138685768 138690347 L1PA6 6164 + 1967 6161 11434 164 1 0 36 3 0 55 4 5 105 0 2 234 0 1 710 0 2 372 0 1 321 0 3 127 399 0 265 0 4 86 0 1 413 2 0 198 1 2 47 0 1 171 0 4 362 5 7 488 3 0 7 chain 29472 chr6 171115067 + 138715180 138715605 LOR1a 498 - 47 479 86742 24 0 3 68 7 13 144 16 10 118 1 5 47 chain 5396 chr6 171115067 + 138765344 138765412 MER57B1 401 + 308 376 191029 68 chain 17812 chr6 171115067 + 138784675 138784913 L1PA8 5853 - 0 233 133365 93 1 0 19 2 1 51 3 1 9 1 0 59 chain 3635 chr6 171115067 + 138786255 138786308 Tigger3c 601 + 210 265 213058 26 2 0 5 0 4 20 chain 5834 chr6 171115067 + 138786312 138786380 Tigger3c 601 + 210 280 186834 25 0 2 43 chain 17925 chr6 171115067 + 138789539 138789761 MER1B 344 + 41 259 133045 175 4 0 43 chain 17673 chr6 171115067 + 138816903 138817203 THE1B 368 - 62 368 133764 63 61 66 60 9 10 107 chain 7696 chr6 171115067 + 138851192 138851292 MLT1A0 366 + 4 106 172963 23 1 3 76 chain 24930 chr6 171115067 + 138851358 138851698 L1PB2 3958 + 3476 3836 105162 60 0 25 56 1 0 64 1 0 72 2 0 21 2 1 61 chain 11563 chr6 171115067 + 138857765 138857915 L1PA8 5853 - 0 148 154054 93 1 0 19 2 1 35 chain 3290 chr6 171115067 + 138912493 138912542 Tigger7 736 + 60 110 219177 11 1 2 37 chain 24773 chr6 171115067 + 138931399 138931685 L1PA5 6144 + 5856 6142 106041 286 chain 22827 chr6 171115067 + 138932608 138932877 AluY 311 + 7 277 116459 125 0 1 144 chain 19137 chr6 171115067 + 138940862 138941105 AluSc 308 + 58 300 129718 195 7 6 41 chain 29239 chr6 171115067 + 138947748 138948059 AluYa5 310 + 0 310 87851 132 1 0 178 chain 125033 chr6 171115067 + 138957279 138959148 L1MA2 4263 + 2143 4058 29383 89 8 7 67 12 15 197 12 14 112 5 3 128 1 0 31 2 1 97 5 6 113 0 6 14 11 18 86 10 12 76 1 0 32 0 3 279 6 10 6 1 0 15 7 6 19 0 12 45 1 0 24 4 5 105 13 12 121 9 8 16 9 12 39 0 13 41 chain 91267 chr6 171115067 + 139021026 139022594 HSMAR1 1287 + 0 1287 39210 76 0 4 35 18 10 64 0 3 37 0 15 195 0 11 107 3 2 27 12 19 55 8 0 5 0 10 181 1 2 5 1 0 248 326 8 8 0 2 122 0 2 34 chain 38602 chr6 171115067 + 139025560 139026084 MLT2A2 560 - 0 560 71291 9 0 6 50 0 1 79 1 12 22 0 1 173 24 40 24 0 1 142 chain 527172 chr6 171115067 + 139027074 139033187 L1PA6 6164 - 12 6160 4480 834 0 3 1086 0 1 128 0 6 563 0 1 245 0 3 387 0 2 567 0 1 240 0 5 802 0 5 45 4 5 144 1 3 4 1 0 505 6 5 42 0 2 33 0 3 244 0 2 232 chain 29609 chr6 171115067 + 139035777 139036238 MSTA-int 1630 - 1155 1630 86179 14 1 0 4 0 1 147 75 88 49 0 1 171 chain 8747 chr6 171115067 + 139051159 139051264 THE1A 353 - 248 353 166934 11 1 0 46 0 1 47 chain 122686 chr6 171115067 + 139051264 139053153 THE1A-int 1579 - 0 1579 30168 294 1 3 136 9 6 300 0 10 152 0 1 20 0 3 99 6 3 5 0 3 154 3 0 19 323 0 87 0 2 89 21 22 171 chain 15519 chr6 171115067 + 139057666 139057838 L1PA2 6032 + 5859 6032 139833 6 0 1 166 chain 24912 chr6 171115067 + 139061567 139061919 THE1B 368 - 1 368 105268 17 3 0 9 5 8 41 0 1 119 16 15 102 0 15 40 chain 6830 chr6 171115067 + 139070396 139070474 MLT1A0 366 + 54 132 178723 78 chain 21426 chr6 171115067 + 139080702 139081053 THE1D 372 - 3 372 122422 120 6 12 13 1 0 3 0 3 18 35 35 90 10 20 55 chain 25486 chr6 171115067 + 139082250 139082556 AluSp 311 - 5 311 102286 306 chain 34282 chr6 171115067 + 139119857 139120288 MER57A1 433 + 0 433 77237 279 0 2 152 chain 9191 chr6 171115067 + 139143779 139143876 L1HS 6032 + 3 100 164600 97 chain 14876 chr6 171115067 + 139149079 139149262 L1PA5 6144 - 4 198 141693 51 0 4 89 7 14 36 chain 4728 chr6 171115067 + 139180216 139180270 U6 107 - 53 107 198179 54 chain 86773 chr6 171115067 + 139181860 139182938 L1PA8 5853 - 0 1071 40860 93 1 0 19 2 1 39 8 7 6 1 0 9 2 1 70 2 0 44 1 0 390 6 5 161 0 2 224 chain 28567 chr6 171115067 + 139226427 139226726 AluYb8 318 - 18 317 90885 299 chain 4345 chr6 171115067 + 139231791 139231845 MSTB 430 + 360 414 202654 54 chain 27393 chr6 171115067 + 139258062 139258409 THE1B 368 - 2 368 94995 37 1 2 183 0 1 17 0 1 58 7 23 44 chain 6398 chr6 171115067 + 139268298 139268380 THE1D 372 + 290 372 182043 82 chain 8689 chr6 171115067 + 139273836 139273934 L1MA5A 2387 + 1096 1194 167254 98 chain 14902 chr6 171115067 + 139275539 139275741 MER30 238 - 1 208 141622 117 9 14 76 chain 15575 chr6 171115067 + 139279537 139279726 L1PA8A 6298 - 8 199 139655 9 0 1 110 0 1 70 chain 117174 chr6 171115067 + 139314473 139316022 THE1C-int 1605 + 16 1589 32067 296 15 21 94 27 34 836 0 3 74 12 19 100 1 0 36 0 2 58 chain 27698 chr6 171115067 + 139329269 139329623 THE1A 353 - 1 353 94052 154 1 0 88 1 0 110 chain 15968 chr6 171115067 + 139344908 139345127 L1MA7 2200 - 854 1077 138461 14 9 13 196 chain 3288 chr6 171115067 + 139357473 139357510 MLT1D 503 - 404 441 219222 37 chain 19830 chr6 171115067 + 139370173 139370518 THE1B 368 + 0 348 127715 111 1 3 6 2 0 57 30 22 11 0 4 10 18 26 56 7 6 36 chain 24653 chr6 171115067 + 139391117 139391406 AluY 311 + 0 298 106704 63 0 8 61 0 1 165 chain 26014 chr6 171115067 + 139395076 139395426 MER1A 529 - 0 354 99962 56 27 30 148 0 1 119 chain 22034 chr6 171115067 + 139404355 139404635 AluSc 308 + 11 283 120091 112 1 0 3 7 0 157 chain 524729 chr6 171115067 + 139405568 139411699 L1PA6 6164 - 5 6164 4709 332 0 1 496 8 12 506 2 0 9 1 3 918 0 1 691 0 1 416 0 3 436 3 0 407 0 1 459 0 4 17 1 0 192 0 1 429 0 17 69 1 2 507 3 0 164 1 2 63 chain 41874 chr6 171115067 + 139413386 139413910 MER41A 554 + 0 546 66798 75 0 22 172 2 0 142 0 2 133 chain 17626 chr6 171115067 + 139428998 139429200 L1PA4 6152 - 6 208 133916 202 chain 13670 chr6 171115067 + 139430152 139430318 THE1C 375 + 209 375 145707 166 chain 301059 chr6 171115067 + 139442210 139445635 L1PA5 6144 - 13 3447 13371 1800 1 2 264 0 1 123 1 0 82 0 1 347 3 2 86 1 7 384 0 1 268 0 1 65 chain 5315 chr6 171115067 + 139460685 139460958 LTR16A 446 - 95 354 191873 48 33 29 25 147 137 20 chain 4931 chr6 171115067 + 139475264 139475324 MER2 342 - 168 231 195912 38 0 3 22 chain 43509 chr6 171115067 + 139478029 139478575 MER41A 554 - 0 554 64803 176 1 2 109 1 0 102 1 0 64 0 10 87 1 0 4 chain 5499 chr6 171115067 + 139512604 139512708 MER3 215 - 112 215 190044 54 26 25 24 chain 7851 chr6 171115067 + 139516069 139516311 MLT1D 503 - 19 255 171993 68 0 1 13 127 120 34 chain 264327 chr6 171115067 + 139527375 139531634 L1PB2 3958 + 138 3838 15466 37 5 0 3 1 0 49 5 2 35 314 0 22 2 0 6 2 0 134 7 12 86 0 12 718 2 0 25 0 1 99 314 0 81 1 2 60 2 1 52 2 1 63 18 18 5 0 3 225 8 9 90 5 6 99 0 1 386 15 5 4 0 1 83 0 4 211 7 86 49 1 0 283 0 4 96 3 1 55 1 0 75 2 0 13 4 0 94 2 0 21 16 16 35 1 0 63 7 6 69 2 0 20 1 0 63 chain 553807 chr6 171115067 + 139531634 139537767 L1PA4 6152 + 2 6146 972 479 4 5 757 0 1 239 0 1 1060 0 2 1689 0 2 530 3 5 526 0 3 597 1 0 248 chain 86618 chr6 171115067 + 139544640 139545590 L1PA3long 6157 + 5204 6153 40918 805 1 0 144 chain 10274 chr6 171115067 + 139556256 139556416 LTR1 825 + 70 280 159255 87 3 2 24 14 64 6 0 1 26 chain 15456 chr6 171115067 + 139556418 139556624 THE1D-int 1627 + 1408 1622 140034 106 0 6 56 2 1 13 0 3 29 chain 37592 chr6 171115067 + 139607714 139608185 MER1A 529 + 30 519 72695 430 1 6 19 0 13 21 chain 35788 chr6 171115067 + 139610206 139610664 LTR2 463 + 0 463 75151 56 0 4 302 12 13 88 chain 25221 chr6 171115067 + 139650488 139650869 L1PA8 5853 + 5466 5851 103633 98 1 0 45 2 0 50 11 12 8 1 0 15 2 0 5 2 3 38 2 1 19 2 1 70 0 10 10 chain 21454 chr6 171115067 + 139677921 139678152 L1PA3long 6157 + 5926 6157 122317 231 chain 26238 chr6 171115067 + 139680218 139680718 L1PB3 3668 + 3117 3592 99060 70 47 48 55 1 0 79 24 23 86 20 4 21 2 0 14 0 1 10 3 1 35 9 5 13 1 0 10 chain 81558 chr6 171115067 + 139684506 139685452 L1PA6 6164 + 5218 6162 42951 100 0 4 59 3 0 18 1 0 755 2 0 8 chain 28846 chr6 171115067 + 139732424 139732811 MLT2A1 477 - 92 477 89684 170 5 7 4 1 0 34 4 1 169 chain 39933 chr6 171115067 + 139733317 139733781 L1PA6 6164 + 5698 6162 69421 464 chain 4968 chr6 171115067 + 139792089 139792146 ORSL 269 - 161 218 195496 57 chain 23216 chr6 171115067 + 139811601 139811991 MER57B2 428 - 0 428 114619 58 65 75 12 0 1 120 5 11 8 0 19 14 0 2 108 chain 8590 chr6 171115067 + 139815103 139815237 MER82 654 + 322 475 167786 32 1 2 17 8 26 76 chain 32993 chr6 171115067 + 139826862 139827333 MER4A1 472 - 0 472 79229 24 19 4 42 8 12 20 0 3 91 0 1 40 4 12 152 0 1 24 1 0 46 chain 27800 chr6 171115067 + 139837221 139837526 AluYa5 310 - 0 310 93695 65 5 10 235 chain 22211 chr6 171115067 + 139847019 139847287 AluSp 311 - 17 297 119298 51 0 13 102 2 0 91 0 1 22 chain 9092 chr6 171115067 + 139877708 139877887 MER58A 224 - 0 179 165113 92 0 1 7 53 52 27 chain 28908 chr6 171115067 + 139879110 139879415 AluYb8 318 + 0 305 89425 305 chain 10408 chr6 171115067 + 139892904 139893084 MER1A 529 + 356 529 158651 74 43 36 63 chain 23769 chr6 171115067 + 139894336 139894623 AluY 311 + 10 297 111653 287 chain 7400 chr6 171115067 + 139933236 139933327 MLT1A0 366 + 256 347 174772 91 chain 131706 chr6 171115067 + 139936870 139938771 L1PB1 5432 - 9 1868 27698 6 1 0 13 1 0 13 1 0 19 10 9 17 2 0 12 13 10 15 31 20 7 1 0 45 1 0 16 3 2 51 2 0 6 8 4 14 1 0 6 1 0 24 31 11 13 7 11 28 1 0 350 6 0 47 0 3 23 5 0 247 0 1 193 22 28 90 0 2 104 0 1 143 1 4 81 3 2 93 0 2 73 chain 24757 chr6 171115067 + 139941261 139941551 AluYc3 301 + 1 292 106132 112 1 2 177 chain 29649 chr6 171115067 + 139978888 139979197 AluYk12 309 - 0 309 86071 309 chain 7940 chr6 171115067 + 139980171 139980279 Tigger3c 601 + 452 563 171384 20 6 7 43 0 2 39 chain 27490 chr6 171115067 + 139983542 139983840 AluYa5 310 + 11 307 94682 86 2 0 210 chain 127631 chr6 171115067 + 139993615 139995502 L1MA2 4263 + 2239 4105 28663 18 5 0 182 2 4 158 0 1 39 16 46 155 7 1 66 0 3 42 0 10 168 0 9 7 8 0 94 11 10 319 2 0 9 8 5 77 1 0 136 39 0 10 3 0 113 0 1 30 28 26 62 28 21 44 chain 13750 chr6 171115067 + 139996915 139997098 MER30 238 + 35 237 145441 72 4 23 107 chain 20615 chr6 171115067 + 140010153 140010397 L1PA5 6144 + 5901 6144 125243 224 1 0 19 chain 120492 chr6 171115067 + 140018195 140019615 LTR12C 1709 - 0 1709 30877 404 0 1 76 0 4 102 2 0 10 1 0 104 0 278 184 0 9 537 chain 26417 chr6 171115067 + 140022641 140022988 THE1C 375 - 0 375 98350 160 10 29 47 0 4 95 0 5 35 chain 3085 chr6 171115067 + 140026665 140026700 MLT1F-int 966 + 883 918 223233 35 chain 115916 chr6 171115067 + 140046648 140048049 LTR12C 1709 - 0 1709 32489 481 0 4 107 3 1 5 1 0 8 0 319 120 0 1 63 12 0 492 5 4 104 chain 96051 chr6 171115067 + 140090610 140091692 L1PA5 6144 + 5060 6144 37805 745 0 1 149 0 1 188 chain 11502 chr6 171115067 + 140095226 140095389 MER44A 345 - 90 265 154291 32 0 4 53 1 3 56 0 6 21 chain 33339 chr6 171115067 + 140115767 140116170 THE1B-int 1605 - 0 405 78674 8 0 1 8 0 1 387 chain 3559 chr6 171115067 + 140118119 140118163 MSTB 430 + 1 45 214339 44 chain 5766 chr6 171115067 + 140149324 140149520 MER20 218 + 20 205 187468 40 66 62 14 25 24 38 6 0 7 chain 20374 chr6 171115067 + 140159875 140160228 THE1B 368 + 0 368 125981 111 1 3 6 1 0 49 34 35 6 0 4 18 12 20 54 7 6 25 0 2 29 chain 58557 chr6 171115067 + 140164935 140165767 L1PA11 4918 + 3697 4502 53670 93 0 1 14 12 10 78 0 1 245 1 2 190 11 6 56 2 1 12 1 0 36 22 4 29 2 0 14 1 0 13 chain 22654 chr6 171115067 + 140187014 140187292 AluSc8 310 + 25 309 117305 107 0 3 126 0 4 40 1 0 4 chain 29020 chr6 171115067 + 140187849 140188157 AluYb8 318 + 0 308 88907 308 chain 22866 chr6 171115067 + 140212008 140212279 AluSp 311 + 25 296 116253 271 chain 13835 chr6 171115067 + 140223403 140223587 THE1B 368 + 181 368 145114 17 0 2 16 2 3 149 chain 26122 chr6 171115067 + 140227542 140227915 THE1C 375 - 0 375 99519 25 1 0 92 1 0 41 11 14 50 8 10 79 1 0 64 chain 13599 chr6 171115067 + 140232970 140233178 MER30 238 - 0 238 145979 108 15 37 55 16 24 14 chain 31904 chr6 171115067 + 140284129 140284604 LTR45B 484 + 16 484 81002 61 1 0 105 61 8 15 0 46 211 0 1 21 chain 118694 chr6 171115067 + 140319853 140321260 LTR12C 1709 - 0 1685 31534 218 7 4 259 0 4 106 3 1 5 1 0 38 0 2 60 0 278 710 chain 68691 chr6 171115067 + 140349216 140350278 L1PA14 3548 - 83 1119 48945 10 6 0 40 1 0 17 19 21 35 5 1 9 1 0 99 13 12 84 1 0 6 2 0 17 4 0 109 2 0 6 2 0 39 26 22 23 0 1 123 7 8 95 1 0 152 2 1 106 chain 3556 chr6 171115067 + 140397129 140397171 MER5A1 166 - 39 81 214427 42 chain 511144 chr6 171115067 + 140435866 140442030 L1PA6 6164 + 0 6159 6054 236 0 2 243 3 2 969 1 0 228 0 1 159 0 1 518 2 0 154 0 1 73 1 4 135 12 0 10 0 12 424 0 4 231 5 1 16 106 106 8 6 0 35 5 4 119 0 1 554 1 0 174 0 1 141 7 1 704 0 1 45 0 4 832 2 0 5 chain 9647 chr6 171115067 + 140439286 140439392 L1PA6 6164 - 2634 2740 152504 106 chain 3240 chr6 171115067 + 140447265 140447302 L1MD3 1191 - 155 192 220218 37 chain 29081 chr6 171115067 + 140449002 140449312 AluYb8 318 + 0 310 88636 310 chain 25204 chr6 171115067 + 140461673 140461976 AluY 311 + 0 299 103711 123 8 4 172 chain 9338 chr6 171115067 + 140468905 140469167 LTR12C 1709 - 509 936 163868 20 0 285 12 78 0 46 42 0 64 chain 27107 chr6 171115067 + 140470766 140471057 AluYa5 310 - 1 292 95917 291 chain 76983 chr6 171115067 + 140482649 140483530 L1P1 4361 - 554 1433 44976 648 3 1 230 chain 168437 chr6 171115067 + 140483531 140485422 L1PA3long 6157 + 4260 6157 22231 1040 4 0 10 0 4 623 1 7 213 chain 30962 chr6 171115067 + 140516102 140516520 MER41A 554 + 10 431 82582 376 24 27 18 chain 510418 chr6 171115067 + 140550978 140557380 L1PA7 6471 + 0 6467 6129 11 0 1 231 0 1 8 7 14 139 3 0 68 1 0 101 4 1 146 31 36 10 7 10 4 0 1 109 0 13 10 3 0 5 8 11 323 12 31 72 0 1 210 1 0 45 2 5 212 0 4 119 0 1 312 1 0 132 1 5 52 0 1 65 0 2 110 0 5 105 14 20 379 8 0 361 1 0 235 2 3 96 2 0 173 2 0 509 8 7 143 0 4 942 0 3 81 0 2 577 0 1 189 chain 31018 chr6 171115067 + 140578632 140579039 LTR7 482 - 0 482 82478 163 0 4 25 0 32 33 0 1 109 9 47 68 chain 266444 chr6 171115067 + 140580282 140583804 HERVH-int 3825 - 0 3825 15372 225 0 2 125 1 0 4 0 1 101 3 9 7 6 0 13 147 362 250 0 1 435 1 0 153 0 3 113 1 15 13 0 22 255 4 31 229 0 2 166 0 1 64 15 0 444 1 0 49 2 1 8 20 0 22 2 1 11 91 1 30 2 39 13 3 111 493 chain 20901 chr6 171115067 + 140635175 140635558 THE1D 372 - 0 372 124271 75 0 4 47 39 40 12 66 50 144 chain 41293 chr6 171115067 + 140650192 140650920 MER52-int 3354 - 77 766 67540 30 4 1 16 31 28 14 2 0 7 2 0 6 2 0 14 3 2 40 2 0 11 1 0 34 1 0 6 2 0 8 17 13 30 1 0 31 6 4 40 1 0 13 3 1 33 1 0 15 2 0 31 13 12 5 1 0 52 1 0 10 4 0 182 chain 40065 chr6 171115067 + 140650927 140651482 MLT2A2 560 - 7 560 69228 41 0 12 35 47 28 233 1 2 42 0 4 156 chain 47896 chr6 171115067 + 140660057 140660612 L1PA7 6471 - 2 559 60561 223 0 2 332 chain 99082 chr6 171115067 + 140690272 140691366 L1PA3long 6157 + 5055 6149 37003 277 6 7 676 1 0 134 chain 129124 chr6 171115067 + 140694355 140695852 SVA_C 1631 - 1 1630 28285 16 4 0 596 1 0 27 0 134 132 5 6 173 0 2 543 chain 24411 chr6 171115067 + 140710386 140710763 THE1B 368 - 0 368 108024 75 1 0 101 2 0 17 10 3 46 11 9 75 1 6 23 3 1 12 chain 4310 chr6 171115067 + 140715220 140715270 L1MB8 1703 + 1503 1553 203089 50 chain 56337 chr6 171115067 + 140720538 140721202 L1PA5 6144 - 10 668 54942 49 1 0 388 6 0 169 0 1 51 chain 85761 chr6 171115067 + 140743538 140745001 L1MA1 4479 - 358 1735 41240 13 2 0 30 1 0 126 3 0 5 1 0 88 1 0 14 2 0 19 2 1 66 3 1 4 1 0 15 8 6 17 2 1 46 0 2 18 1 4 125 3 0 66 0 1 4 1 0 22 58 29 4 1 0 5 3 0 96 27 9 20 7 2 11 1 0 73 4 0 21 39 36 136 2 0 27 1 0 53 0 1 38 7 4 34 3 4 20 2 1 31 3 1 27 chain 15552 chr6 171115067 + 140795251 140795450 MSTA 426 - 190 385 139723 22 2 0 57 2 0 116 chain 41216 chr6 171115067 + 140823405 140823924 MER75 514 + 0 514 67630 122 5 0 48 0 1 277 2 1 65 chain 18534 chr6 171115067 + 140903022 140903296 L1PA8 5853 + 5585 5853 131413 23 2 0 70 2 1 14 2 0 7 6 7 33 2 1 19 1 0 93 chain 67261 chr6 171115067 + 140918391 140919240 L1PA8A 6298 - 526 1392 49538 203 0 2 76 3 2 467 2 6 41 0 12 57 chain 40616 chr6 171115067 + 140919251 140919786 L1PA8A 6298 + 5755 6291 68410 92 0 1 72 4 5 212 3 0 44 3 5 81 9 0 8 0 9 7 chain 105202 chr6 171115067 + 140934029 140935224 L1PA4 6152 - 1 1192 35448 55 3 1 801 1 0 64 1 0 270 chain 14649 chr6 171115067 + 140947137 140947320 THE1B-int 1605 - 0 184 142426 5 0 1 178 chain 29162 chr6 171115067 + 140950454 140950769 AluYb9 318 - 2 318 88245 189 0 1 126 chain 26835 chr6 171115067 + 140952902 140953183 AluYb8 318 + 36 317 96855 281 chain 320705 chr6 171115067 + 140967422 140971470 HERVL-int 5654 + 0 4220 12568 506 0 1 101 18 0 9 13 47 28 13 154 165 9 10 88 1 2 7 1 0 237 0 9 309 1 0 118 1 2 286 0 1 207 0 1 4 2 1 48 1 2 530 1 2 595 18 16 519 0 1 86 0 1 102 4 5 20 chain 4888 chr6 171115067 + 140971559 140971619 MER57C2 434 + 372 432 196394 60 chain 5038 chr6 171115067 + 140981761 140981839 MADE1 96 - 0 96 194746 34 8 26 36 chain 16817 chr6 171115067 + 140984994 140985348 MSTA 426 + 29 426 136073 60 32 61 35 17 15 6 2 0 17 36 34 31 8 28 110 chain 117925 chr6 171115067 + 141008455 141009746 L1PA3long 6157 - 13 1304 31828 1291 chain 53163 chr6 171115067 + 141009746 141010335 L1P1 4361 + 2457 3046 56734 589 chain 31601 chr6 171115067 + 141011055 141011510 MLT2A1 477 - 6 477 81487 10 4 0 39 15 37 181 0 1 25 13 10 168 chain 451983 chr6 171115067 + 141011510 141017151 HERVL-int 5654 - 0 5654 8697 59 1 2 174 0 3 187 5 6 262 4 0 958 1 2 429 1 0 4 0 1 314 1 0 397 25 13 137 7 6 301 4 6 18 3 4 11 0 1 13 0 1 513 0 16 870 0 1 5 3 2 63 0 5 164 0 1 36 3 7 549 6 0 113 chain 18523 chr6 171115067 + 141017283 141017524 MLT2A1 477 - 239 477 131438 68 11 8 162 chain 139199 chr6 171115067 + 141021680 141023374 L1PA7 6471 - 7 1699 26262 761 8 3 84 0 2 664 0 1 177 chain 22699 chr6 171115067 + 141053504 141053854 THE1B 368 - 0 368 117083 109 1 0 19 48 67 4 1 0 55 0 1 113 chain 18151 chr6 171115067 + 141059096 141059445 THE1B 368 - 10 368 132457 105 75 78 33 28 34 108 chain 25705 chr6 171115067 + 141092514 141092881 THE1B 368 + 2 368 101266 48 9 0 6 0 9 107 4 3 108 9 8 28 0 1 48 chain 43403 chr6 171115067 + 141180733 141181275 MER4E 760 + 0 572 64933 24 6 0 422 4 8 55 0 32 31 chain 325303 chr6 171115067 + 141189358 141193069 L1PA5 6144 + 2428 6143 12378 150 0 1 484 1 3 114 1 0 767 0 2 18 0 1 95 2 0 805 0 1 7 0 1 4 1 0 1262 chain 93955 chr6 171115067 + 141197377 141198427 L1PA3long 6157 - 1115 2206 38338 357 0 41 693 chain 105053 chr6 171115067 + 141198427 141199565 L1PA3long 6157 + 5019 6157 35492 1138 chain 237160 chr6 171115067 + 141215206 141218591 MER61-int 3695 - 346 3695 16925 72 1 0 69 13 5 45 0 1 5 3 0 91 0 1 163 1 0 34 1 0 98 1 0 154 2 1 75 11 11 9 2 1 127 0 1 53 23 24 68 1 0 46 1 2 57 1 0 33 0 8 133 0 6 168 0 1 78 8 13 160 10 8 52 1 0 179 26 0 168 1 0 170 1 0 153 7 11 158 3 1 93 7 6 125 26 12 46 15 17 65 1 0 6 4 6 50 0 1 122 5 7 20 0 1 13 1 0 11 22 18 17 chain 173605 chr6 171115067 + 141291969 141294256 L1P2 5180 - 1558 3835 21635 93 17 18 97 1 2 176 0 4 303 0 4 6 12 8 69 0 2 450 19 10 53 11 0 58 2 0 5 10 12 211 1 3 693 chain 171188 chr6 171115067 + 141294256 141296325 L1PA7 6471 + 4366 6457 21914 100 0 1 605 5 27 97 1 0 425 2 1 560 0 1 127 1 0 10 5 6 131 chain 100093 chr6 171115067 + 141310729 141311885 L1PA5 6144 - 9 1170 36749 671 10 14 127 0 1 348 chain 29851 chr6 171115067 + 141325716 141326033 AluYb9 318 - 2 317 85274 198 2 0 117 chain 58736 chr6 171115067 + 141335352 141336106 LTR12 884 - 0 884 53563 86 4 0 67 6 7 190 0 1 48 0 2 92 7 137 254 chain 13284 chr6 171115067 + 141344049 141344383 MLT1A0 366 - 0 336 147155 91 122 124 73 3 0 7 15 18 23 chain 9913 chr6 171115067 + 141352817 141352945 THE1C 375 - 246 375 161004 108 1 2 19 chain 3871 chr6 171115067 + 141361967 141362009 LTR12C 1709 - 991 1033 209296 42 chain 4954 chr6 171115067 + 141362256 141362567 LTR12C 1709 - 641 914 195663 49 231 193 31 chain 3218 chr6 171115067 + 141362406 141362493 LTR12C 1709 - 506 552 220614 15 41 0 31 chain 22948 chr6 171115067 + 141368575 141368872 AluY 311 + 0 302 115869 47 0 10 190 10 5 50 chain 3814 chr6 171115067 + 141369543 141369627 MER58C 217 - 11 96 210183 45 23 24 16 chain 122695 chr6 171115067 + 141401707 141403262 THE1A-int 1579 + 0 1567 30165 111 1 4 155 0 3 167 0 2 799 6 9 253 1 3 27 1 0 34 chain 157218 chr6 171115067 + 141403623 141406339 L1PB1 5432 + 2810 5401 23698 16 1 0 16 45 41 53 0 1 5 1 0 40 2 1 46 5 24 211 44 50 117 0 8 125 0 1 129 1 0 34 10 4 57 0 1 236 51 12 11 13 18 6 9 0 288 4 9 76 0 1 103 7 6 17 1 0 4 0 1 36 20 7 5 2 0 179 2 1 8 0 3 134 0 1 5 0 46 58 186 68 5 1 0 8 3 2 14 5 1 9 2 0 52 3 2 11 1 4 45 1 0 5 32 21 11 10 8 5 1 0 14 2 0 24 1 0 22 1 0 9 chain 89896 chr6 171115067 + 141417345 141418373 LTR5A 1029 - 0 1029 39683 843 0 2 34 1 0 150 chain 3622 chr6 171115067 + 141418813 141418973 THE1B 368 + 2 163 136918 39 68 69 53 chain 32663 chr6 171115067 + 141418974 141419352 L1PA5 6144 - 2 380 79743 378 chain 4278 chr6 171115067 + 141419353 141419542 THE1B 368 + 169 368 136918 29 35 45 125 chain 9327 chr6 171115067 + 141422460 141422793 MLT1A0 366 + 9 350 163908 71 198 204 29 0 2 35 chain 22090 chr6 171115067 + 141425222 141425637 L1PA11 4918 + 4185 4578 119840 17 15 13 118 6 4 40 0 3 13 2 1 12 2 0 68 2 0 14 1 0 20 4 0 9 3 0 5 2 0 7 24 20 18 2 0 11 chain 4189 chr6 171115067 + 141430240 141430285 LTR14A 344 + 0 45 204717 45 chain 29082 chr6 171115067 + 141470016 141470329 AluYa5 310 + 0 310 88624 132 3 0 178 chain 96105 chr6 171115067 + 141470988 141472325 HUERS-P3b-int 2065 - 34 1352 37790 90 1 0 57 4 0 62 10 7 14 2 0 72 6 4 88 1 0 31 1 0 5 2 0 22 2 1 57 8 6 44 1 0 85 7 8 156 1 2 90 0 1 213 0 1 65 1 0 22 1 0 44 9 8 63 chain 78341 chr6 171115067 + 141489092 141490275 LTR12D 1347 + 0 1339 44355 38 1 2 109 0 4 145 2 38 151 39 0 49 7 38 46 40 0 52 78 0 22 0 41 192 0 200 212 chain 2123 chr6 171115067 + 141489771 141489798 LTR12D 1347 + 481 508 228209 27 chain 4101 chr6 171115067 + 141489798 141489845 LTR12D 1347 + 580 627 205932 47 chain 86665 chr6 171115067 + 141496069 141497686 LTR12D 1347 + 0 1347 40898 95 7 19 135 36 33 16 2 38 199 7 38 13 5 4 54 11 2 39 9 26 209 333 0 89 25 2 11 4 0 27 4 3 30 1 0 15 1 2 131 0 8 109 chain 390177 chr6 171115067 + 141497778 141502667 HERV9-int 5642 + 0 4824 10450 17 36 11 5 1 0 263 16 20 472 4 3 254 80 0 60 11 7 325 0 1 666 13 13 204 0 1 380 2 11 125 0 1 604 12 13 678 0 3 5 6 3 197 1 0 192 1 31 259 chain 75741 chr6 171115067 + 141502962 141503808 L1PA3long 6157 + 5311 6157 45627 846 chain 76382 chr6 171115067 + 141504480 141505590 LTR12D 1347 + 0 1347 45272 125 0 1 76 54 51 12 40 76 157 0 109 87 0 17 274 0 97 16 23 0 108 0 1 9 1 3 128 chain 27043 chr6 171115067 + 141527299 141527609 L1PA3long 6157 + 5843 6156 96139 159 0 1 146 0 2 5 chain 14433 chr6 171115067 + 141545008 141545158 AluYg6 310 + 35 185 143098 150 chain 120515 chr6 171115067 + 141556156 141557471 L1PA3long 6157 + 4842 6157 30870 1315 chain 82705 chr6 171115067 + 141614612 141615653 MER11C 1089 - 31 1089 42456 320 0 1 38 1 0 7 0 4 133 8 9 160 1 0 65 0 4 62 4 13 242 chain 4171 chr6 171115067 + 141617293 141617378 L1MB2 1706 - 875 958 204959 5 1 0 19 19 18 41 chain 5636 chr6 171115067 + 141629003 141629067 THE1B 368 - 304 368 188702 64 chain 263398 chr6 171115067 + 141676873 141681159 L1PB1 5432 - 13 4152 15512 15 1 0 12 1 0 22 1 0 24 2 0 14 8 5 15 20 10 6 2 0 15 1 0 44 1 0 16 2 1 8 1 0 43 2 0 11 19 14 10 2 1 19 1 0 11 626 525 754 0 4 26 1 0 57 3 1 188 17 16 335 0 4 267 0 1 91 2 1 12 7 8 217 1 0 9 4 3 65 0 2 23 0 2 212 12 23 109 0 1 74 10 11 252 0 1 360 88 54 115 chain 93107 chr6 171115067 + 141688163 141689213 L1PA4 6152 - 1 1064 38628 14 0 6 605 0 2 218 0 5 213 chain 28518 chr6 171115067 + 141689213 141689533 L1PA4 6152 + 4732 5053 91106 155 0 1 165 chain 65400 chr6 171115067 + 141690020 141690917 L1PA11 4918 - 594 1516 50377 301 1 20 128 0 1 62 0 6 99 15 14 46 23 22 170 0 1 52 chain 5448 chr6 171115067 + 141726346 141726661 LOR1-int 1871 + 1316 1637 190551 29 26 24 22 116 125 38 65 64 19 chain 23690 chr6 171115067 + 141742391 141742667 L1PA4 6152 - 9 284 112082 140 1 0 135 chain 104442 chr6 171115067 + 141750721 141752282 THE1A-int 1579 - 9 1579 35628 19 24 4 137 1 0 5 0 1 218 42 61 63 2 0 68 1 0 37 49 43 123 0 1 42 0 1 58 4 44 12 48 25 119 1 0 64 0 32 11 33 1 294 1 2 85 chain 5817 chr6 171115067 + 141753768 141753837 THE1-int 844 - 369 438 186982 69 chain 74137 chr6 171115067 + 141755076 141756288 L1PA8A 6298 + 5341 6291 46441 151 1 5 82 0 1 88 268 0 133 0 1 19 0 5 134 0 1 178 2 0 15 1 4 25 7 0 108 chain 25899 chr6 171115067 + 141773961 141774352 LTR7 482 + 0 473 100439 69 8 46 108 5 6 37 0 31 10 7 17 95 12 14 40 chain 315193 chr6 171115067 + 141774363 141778201 HERVH-int 3825 + 0 3825 12798 333 1 0 43 0 4 89 1 0 4 0 1 58 5 0 17 1 0 21 1 0 9 27 39 13 21 18 30 42 0 19 2 1 66 1 5 9 1 0 60 1 4 184 6 1 262 0 1 390 0 5 281 0 12 27 0 4 63 1 2 222 0 1 1527 chain 43076 chr6 171115067 + 141812288 141812819 MER41A 554 + 2 533 65326 531 chain 8957 chr6 171115067 + 141817364 141817480 MER30 238 + 86 228 165843 14 0 26 102 chain 18272 chr6 171115067 + 141822056 141822283 THE1B-int 1605 - 12 240 132150 77 0 1 150 chain 31939 chr6 171115067 + 141860593 141861008 MER4A 717 + 1 417 80953 45 1 0 75 0 1 269 3 4 22 chain 8785 chr6 171115067 + 141875325 141875464 L1MA6 2487 + 1855 1995 166739 43 11 13 16 1 0 68 chain 10417 chr6 171115067 + 141887103 141887224 AluJr4 308 + 164 285 158610 121 chain 557720 chr6 171115067 + 141887242 141893273 L1PA2 6032 + 0 6032 534 2197 0 1 3834 chain 36664 chr6 171115067 + 141893332 141893983 L1PB1 5432 + 4781 5422 74006 24 2 10 136 1 2 57 11 9 84 1 2 9 5 0 20 1 0 12 1 0 8 10 6 8 2 0 51 1 0 16 3 2 48 34 23 13 4 17 8 2 0 24 1 0 22 1 0 12 1 0 18 chain 194829 chr6 171115067 + 141926321 141929047 L1PBa 3878 - 1123 3797 19596 21 4 3 4 0 1 15 3 0 246 1 0 176 1 3 136 24 17 27 0 1 488 1 0 627 5 6 58 0 1 105 1 0 56 0 3 152 1 2 57 5 6 17 1 0 293 16 14 7 1 0 50 78 37 26 1 0 9 2 0 6 1 0 4 chain 21383 chr6 171115067 + 141929816 141930136 THE1B 368 + 0 342 122573 44 0 15 33 28 39 41 1 0 28 2 0 96 1 0 46 chain 27774 chr6 171115067 + 141939167 141940298 LTR12C 1709 + 0 1568 36421 468 2 0 182 0 278 16 0 1 13 5 162 104 0 4 330 1 0 10 chain 106897 chr6 171115067 + 141940310 141941455 L1PA2 6032 - 1693 2838 34949 1145 chain 152816 chr6 171115067 + 141941455 141943130 L1PA2 6032 + 4351 6022 24250 172 0 1 1487 5 0 11 chain 3487 chr6 171115067 + 141943154 141943296 LTR12C 1709 + 1568 1709 36421 50 15 14 77 chain 9287 chr6 171115067 + 141943978 141944094 L1PB 1623 - 373 489 164125 116 chain 4598 chr6 171115067 + 141947066 141947135 L1P 111 + 25 96 199647 43 4 6 22 chain 23569 chr6 171115067 + 141957754 141958024 L1PA4 6152 - 9 279 112745 270 chain 9528 chr6 171115067 + 141969545 141969657 L1PA7 6471 + 6344 6459 162938 5 0 3 107 chain 167363 chr6 171115067 + 141975630 141977791 HERVL-int 5654 + 200 2344 22350 117 0 1 137 3 0 6 43 5 44 4 5 355 3 8 181 34 18 23 0 1 143 0 3 138 0 1 532 0 1 161 0 9 32 0 17 113 0 1 92 chain 4059 chr6 171115067 + 142034545 142034591 MADE1 96 - 50 96 206497 46 chain 28145 chr6 171115067 + 142049383 142049786 MER51B 395 - 0 395 92480 144 6 6 144 0 9 17 8 4 31 13 0 40 chain 547769 chr6 171115067 + 142067162 142073173 L1PA2 6032 + 4 6032 1732 601 0 1 102 0 7 2416 0 4 2047 0 4 359 0 1 486 chain 7911 chr6 171115067 + 142083105 142083213 L1PA16 3655 + 3487 3592 171578 90 3 0 15 chain 53544 chr6 171115067 + 142096061 142096910 L1PA14 3548 + 2661 3449 56649 22 9 7 242 12 10 11 2 0 26 2 0 5 34 0 16 9 5 11 0 3 91 2 0 5 2 0 16 2 0 6 1 0 84 1 0 111 1 0 11 5 1 35 4 2 13 4 2 21 1 0 32 chain 29248 chr6 171115067 + 142117353 142117657 AluYa5 310 - 6 310 87800 304 chain 22580 chr6 171115067 + 142122088 142122439 THE1B 368 + 0 365 117669 23 25 41 103 6 5 100 17 16 77 chain 19918 chr6 171115067 + 142124375 142124819 L1M1 2793 - 1715 2132 127406 54 1 2 19 1 0 101 1 0 8 14 12 43 1 0 9 2 0 18 51 47 20 2 0 5 2 0 11 40 27 41 chain 550476 chr6 171115067 + 142135951 142141979 L1PA2 6032 + 0 6030 1377 256 1 0 175 0 1 1596 0 1 1627 1 0 540 0 1 975 0 1 857 chain 35263 chr6 171115067 + 142176426 142176972 MLT2A2 560 - 0 560 75842 20 2 0 10 11 17 100 6 17 169 60 59 168 chain 12223 chr6 171115067 + 142189654 142189871 MER47A 366 + 93 319 151328 114 14 18 47 27 32 15 chain 72262 chr6 171115067 + 142190025 142190822 L1PA3long 6157 + 5359 6157 47350 26 0 1 771 chain 26433 chr6 171115067 + 142201965 142202246 AluYg6 310 + 23 304 98298 281 chain 53354 chr6 171115067 + 142217300 142218003 L1PA8 5853 + 5156 5853 56802 402 7 6 46 2 0 9 0 1 59 3 2 12 5 4 43 2 1 19 1 0 93 chain 71590 chr6 171115067 + 142223660 142224705 L1PA8 5853 - 69 1144 47664 43 2 1 47 13 11 26 0 1 47 2 0 8 1 0 38 1 0 384 16 17 43 12 15 6 3 0 88 1 4 159 26 57 54 3 4 22 chain 10864 chr6 171115067 + 142237821 142237999 LOR1b 457 + 12 167 156727 20 5 0 6 15 0 7 6 2 20 0 1 99 chain 551607 chr6 171115067 + 142238000 142244017 L1PA2 6032 + 6 6032 1237 476 1 2 640 0 3 755 0 4 1278 1 0 1028 0 1 1024 0 1 814 chain 19426 chr6 171115067 + 142260521 142260879 THE1B 368 + 7 367 128882 37 15 30 98 1 0 28 2 0 36 67 57 74 chain 513353 chr6 171115067 + 142260953 142267407 L1PA7 6471 + 19 6457 5846 132 28 30 217 0 3 9 5 0 643 1 2 194 0 6 67 0 1 70 1 4 141 0 1 132 8 9 593 1 0 13 9 7 343 1 2 1012 3 6 122 52 11 47 3 1 685 0 2 128 14 20 366 2 3 72 1 0 508 0 3 237 1 2 146 0 2 302 2 1 143 chain 3979 chr6 171115067 + 142276318 142276363 L1MCb 1641 - 859 904 207696 45 chain 550385 chr6 171115067 + 142290671 142296838 L1PA3long 6157 + 5 6157 1394 69 0 1 383 0 1 562 0 2 1165 8 6 2794 0 1 113 0 1 164 20 1 39 1 0 532 0 1 317 chain 21880 chr6 171115067 + 142314317 142314591 THE1A-int 1579 + 0 277 120713 241 0 3 33 chain 15176 chr6 171115067 + 142314591 142314777 THE1A 353 + 167 353 139889 186 chain 54162 chr6 171115067 + 142335795 142336503 LTR30 714 + 0 714 56253 243 0 1 4 0 4 127 2 1 69 11 12 169 1 3 59 1 0 22 chain 40203 chr6 171115067 + 142336802 142337254 LTR7 482 + 0 482 69024 31 1 0 199 0 31 221 chain 320859 chr6 171115067 + 142337256 142341195 HERVH-int 3825 + 0 3825 12565 212 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 2 1 18 159 13 49 1 0 444 15 0 57 0 7 398 4 31 359 0 1 378 1 0 144 0 2 1225 chain 40220 chr6 171115067 + 142342468 142342919 LTR7 482 + 0 482 69005 221 1 0 4 0 1 4 0 31 221 chain 22114 chr6 171115067 + 142346852 142347222 L1PA13 3608 + 3169 3518 119728 105 2 0 60 1 0 28 11 9 21 1 0 4 2 0 47 2 0 5 2 0 19 1 0 5 22 19 13 5 0 14 chain 113737 chr6 171115067 + 142371918 142373533 L1MA1 4479 + 229 1871 33167 50 11 9 34 1 3 19 0 1 242 0 2 81 7 10 38 12 11 13 19 26 16 14 18 109 3 1 74 1 5 129 1 0 270 4 10 69 1 4 36 10 8 62 0 1 104 0 1 114 0 1 71 chain 27306 chr6 171115067 + 142378770 142379060 AluYa5 310 + 20 310 95259 290 chain 119224 chr6 171115067 + 142392229 142393793 THE1B-int 1605 + 0 1594 31324 187 4 0 243 0 24 9 0 1 166 9 9 13 7 8 170 0 8 172 5 6 154 2 0 5 8 12 156 4 0 54 0 1 196 chain 374047 chr6 171115067 + 142414295 142418506 L1PA4 6152 - 0 4200 10960 6 0 5 839 0 3 664 1 0 952 1 2 812 19 0 917 chain 38946 chr6 171115067 + 142425943 142426479 LTR7B 505 - 15 505 70807 159 2 4 75 4 25 27 69 0 200 chain 213855 chr6 171115067 + 142456635 142459001 L1PA3long 6157 - 1 2370 18239 875 0 1 775 1 2 480 0 1 235 chain 19094 chr6 171115067 + 142471837 142472065 AluSp 311 + 70 298 129829 228 chain 21248 chr6 171115067 + 142478042 142478306 AluSx4 309 + 20 287 123028 90 0 2 145 1 2 28 chain 20750 chr6 171115067 + 142532624 142532866 AluYk4 311 + 58 298 124786 223 2 0 17 chain 4168 chr6 171115067 + 142535573 142535623 MSTA 426 - 220 270 204990 50 chain 87764 chr6 171115067 + 142549252 142550518 L1PA11 4918 - 340 1582 40357 11 2 0 13 1 0 15 48 35 15 1 0 15 2 0 66 2 1 12 1 0 29 1 0 36 4 0 110 0 13 538 4 5 29 19 6 238 0 1 54 chain 185992 chr6 171115067 + 142550518 142552756 L1PA6 6164 - 2 2241 20415 151 8 9 121 1 0 134 0 2 193 0 1 65 1 0 367 0 1 131 1 8 799 0 1 82 7 0 26 3 0 148 chain 21702 chr6 171115067 + 142552756 142553036 L1PA6 6164 + 3653 3934 119141 140 0 1 140 chain 28576 chr6 171115067 + 142554288 142554718 MLT2A1 477 - 0 477 90840 43 17 49 61 1 0 126 5 12 13 1 5 27 0 1 36 7 0 45 10 21 38 chain 11790 chr6 171115067 + 142574438 142574600 MER30 238 - 0 170 153094 48 3 0 69 4 15 38 chain 3154 chr6 171115067 + 142575282 142575321 Arthur1B 1073 + 62 101 221872 39 chain 22680 chr6 171115067 + 142599243 142599620 THE1B 368 - 0 368 117164 10 8 0 67 4 0 47 19 17 13 0 1 4 1 0 4 0 7 29 1 0 53 12 11 21 1 0 4 0 1 79 chain 179214 chr6 171115067 + 142602724 142604786 L1PA6 6164 + 4099 6162 21057 990 0 1 1072 chain 6635 chr6 171115067 + 142619049 142619164 MLT2B4 540 + 2 118 180204 27 16 18 48 1 0 23 chain 4203 chr6 171115067 + 142620951 142621037 MLT2D 439 + 160 248 204501 34 22 21 18 0 3 12 chain 3358 chr6 171115067 + 142632292 142632330 MER96 175 - 31 69 217896 38 chain 3759 chr6 171115067 + 142645025 142645078 Tigger3c 601 + 293 343 210975 37 3 0 13 chain 23074 chr6 171115067 + 142667368 142667655 L1PA7 6471 - 581 868 115278 153 0 1 115 1 0 18 chain 42386 chr6 171115067 + 142667657 142668151 L1PA7 6471 + 5955 6449 66170 494 chain 5915 chr6 171115067 + 142672402 142672493 L1PREC2 3366 + 2779 2867 186051 8 0 1 18 1 0 44 1 0 4 2 0 13 chain 237885 chr6 171115067 + 142743302 142745871 L1PA2 6032 - 2 2567 16887 1246 4 0 1319 chain 22105 chr6 171115067 + 142749619 142749987 THE1D 372 - 1 372 119763 7 0 4 26 1 0 91 47 55 83 4 5 42 11 2 56 chain 55301 chr6 171115067 + 142771675 142772350 LTR12_ 688 - 15 688 55518 140 0 5 93 7 0 49 1 0 5 0 1 380 chain 101221 chr6 171115067 + 142774985 142776313 L1PA8 5853 + 4515 5849 36457 158 1 0 52 1 2 279 0 3 52 7 11 12 2 3 279 5 8 34 0 1 155 1 0 44 2 0 71 1 0 61 2 1 17 5 4 87 chain 31178 chr6 171115067 + 142784586 142785031 THE1C-int 1605 - 1090 1605 82204 63 0 7 84 5 6 20 0 6 152 8 61 71 2 3 23 1 3 16 chain 17353 chr6 171115067 + 142789111 142789324 AluY 311 + 77 297 134646 44 0 2 4 1 0 17 5 11 142 chain 10451 chr6 171115067 + 142812879 142813032 L1PREC2 3366 + 2545 2689 158488 96 17 8 40 chain 411407 chr6 171115067 + 142833680 142839425 L1PB1 5432 - 12 5322 9762 16 1 0 13 1 0 21 1 0 22 10 5 11 1 0 5 2 0 19 16 6 6 1 0 16 1 0 44 7 6 9 2 1 53 2 0 8 5 1 10 2 1 9 1 0 21 79 0 9 0 5 395 0 1 81 3 0 889 30 6 147 0 1 4 1 0 573 1 2 154 10 11 88 0 1 250 0 2 119 0 4 527 0 4 249 0 6 152 4 2 32 7 0 6 4 3 256 0 1 260 0 2 92 310 0 181 1 0 38 18 14 268 3 4 168 chain 4067 chr6 171115067 + 142851843 142852121 MLT2B2 565 + 377 563 206385 17 205 114 11 2 0 27 0 1 16 chain 29213 chr6 171115067 + 142856139 142856519 THE1D-int 1627 + 1237 1620 87993 49 8 11 323 chain 195289 chr6 171115067 + 142858450 142861734 HERVH48-int 3304 + 187 3245 19559 9 3 0 32 1 0 28 13 0 21 1 0 9 2 10 66 7 3 4 1 0 72 2 1 12 6 0 10 13 7 81 1 0 7 3 1 39 16 1 26 8 0 3 1 0 17 4 0 17 8 5 57 14 12 39 1 0 30 1 0 70 25 17 116 5 2 10 1 0 22 1 0 13 2 0 31 9 4 19 2 0 7 1 0 15 1 0 21 2 0 25 2 1 16 2 0 6 1 0 4 11 5 109 0 1 12 1 0 12 1 0 8 6 5 213 1 0 89 1 0 278 2 1 10 1 0 230 1 2 5 0 1 7 25 22 67 1 0 12 1 0 15 0 1 31 1 0 229 1 0 4 14 13 5 1 0 44 4 2 13 5 1 30 2 0 17 45 27 9 1 0 9 30 22 7 4 0 12 39 30 27 3 0 8 11 5 26 12 5 9 1 0 23 2 0 5 1 0 45 6 3 68 60 44 69 3 1 13 25 16 13 38 24 26 chain 30976 chr6 171115067 + 142863975 142864362 MER48 407 + 3 407 82556 330 0 17 57 chain 95552 chr6 171115067 + 142880844 142881921 L1PA5 6144 - 0 1077 37944 1077 chain 8873 chr6 171115067 + 142883273 142883382 MLT1A0 366 - 27 136 166272 109 chain 15382 chr6 171115067 + 142896107 142896347 THE1D 372 + 94 352 140256 10 0 1 61 9 15 8 3 0 4 2 0 13 16 32 114 chain 6061 chr6 171115067 + 142897671 142897742 MER41-int 2638 + 363 434 184739 71 chain 550994 chr6 171115067 + 142898150 142904309 L1PA3long 6157 + 10 6155 1312 540 1 8 1251 1 0 1142 0 1 748 1 0 1288 0 1 1090 22 1 75 chain 40141 chr6 171115067 + 142970634 142971085 LTR7 482 + 0 482 69124 264 0 31 187 chain 3025 chr6 171115067 + 142979809 142979842 MLT1C 463 - 395 428 224469 33 chain 5072 chr6 171115067 + 142986496 142986559 LTR37B 484 - 39 102 194399 63 chain 4262 chr6 171115067 + 143043230 143043278 L1PA4 6152 - 0 48 203723 48 chain 23678 chr6 171115067 + 143104211 143104488 AluSc 308 + 11 304 112162 41 0 16 236 chain 10550 chr6 171115067 + 143109330 143109446 L1PA4 6152 + 6027 6143 158044 116 chain 26318 chr6 171115067 + 143113503 143113862 L1PA8 5853 + 5496 5853 98749 68 1 0 36 6 8 74 1 0 9 1 0 43 0 1 5 2 1 18 3 2 92 chain 5995 chr6 171115067 + 143127477 143127548 MER41B 635 + 481 554 185293 30 0 1 10 0 1 31 chain 27751 chr6 171115067 + 143181476 143181912 MER1A 529 - 0 483 93865 63 29 32 50 0 4 68 5 0 62 12 14 101 0 40 10 1 2 22 0 2 13 chain 23093 chr6 171115067 + 143244188 143244480 AluSg7 307 + 0 293 115180 24 1 0 107 0 1 6 15 16 139 chain 6397 chr6 171115067 + 143281821 143281899 MLT2A2 560 + 0 78 182055 78 chain 24423 chr6 171115067 + 143281899 143282243 THE1B 368 - 0 368 107950 125 7 15 10 0 4 12 1 0 4 1 0 30 1 0 113 0 15 40 chain 25751 chr6 171115067 + 143292070 143292403 THE1A 353 - 22 353 101080 133 1 0 88 2 1 109 chain 26220 chr6 171115067 + 143293472 143293901 L1PB2 3958 + 3423 3838 99124 16 2 0 12 4 0 94 10 9 52 0 1 11 1 0 63 2 1 40 0 1 13 16 14 25 1 0 25 17 13 25 chain 29584 chr6 171115067 + 143295272 143295602 L1PA4 6152 - 2 333 86255 146 0 1 184 chain 28398 chr6 171115067 + 143295705 143296001 AluYa5 310 - 14 310 91592 296 chain 91053 chr6 171115067 + 143298128 143299241 L1P3 4156 + 3022 4139 39275 71 0 4 173 3 4 308 0 2 524 2 0 8 4 3 20 chain 328233 chr6 171115067 + 143300536 143304680 L1P2 5180 - 1055 5178 12269 38 4 9 907 0 1 340 1 2 32 50 6 471 1 0 169 0 1 133 0 8 568 1 0 27 0 5 450 3 28 138 1 0 5 1 0 272 1 0 8 1 0 7 5 0 9 0 2 187 21 22 16 36 35 80 1 0 30 20 7 110 chain 27801 chr6 171115067 + 143313716 143314864 L1PA8 5853 + 3969 5116 25231 90 0 4 271 1 0 36 7 6 629 1 0 5 2 0 106 chain 321467 chr6 171115067 + 143314888 143319007 L1P2 5180 + 2 4125 12539 135 1 0 13 1 0 44 1 0 50 18 17 50 36 15 68 17 15 39 21 13 54 1 0 48 1 0 167 5 13 44 0 15 91 4 8 30 0 1 237 7 10 5 3 0 141 1 4 234 1 0 762 1 2 905 0 4 702 7 8 132 4 9 38 chain 17533 chr6 171115067 + 143319007 143319731 L1PA8 5853 + 5118 5846 25231 443 2 1 48 2 0 68 2 1 13 5 15 33 2 1 19 1 0 86 chain 76779 chr6 171115067 + 143319765 143320711 L1PA6 6164 - 3 953 45090 135 7 0 8 9 16 682 0 5 7 5 4 93 chain 14355 chr6 171115067 + 143323256 143323417 L1PA4 6152 - 0 161 143355 161 chain 11425 chr6 171115067 + 143330716 143330889 MER30 238 + 59 238 154585 12 3 0 36 10 22 70 3 0 39 chain 491919 chr6 171115067 + 143350384 143356796 L1PA6 6164 - 2 6164 7275 328 0 1 511 0 4 628 20 21 204 0 12 184 0 1 475 0 1 85 0 2 210 0 1 218 0 3 97 4 0 191 1 2 206 5 6 28 10 5 368 140 0 44 0 1 1042 8 2 279 23 22 176 0 17 43 27 6 168 53 0 4 23 0 116 19 0 90 32 5 330 0 3 22 chain 37730 chr6 171115067 + 143385945 143386415 LTR7C 471 - 0 471 72516 33 0 1 60 1 0 4 0 1 372 chain 20579 chr6 171115067 + 143399598 143399960 THE1B 368 - 0 368 125365 46 17 16 66 8 16 10 0 1 4 36 33 58 9 10 108 chain 328215 chr6 171115067 + 143402706 143406653 HERV17-int 4347 - 0 4335 12270 182 0 3 195 28 24 166 0 2 11 0 2 17 0 3 560 42 0 1152 0 1 557 1 2 438 0 2 24 4 0 3 2 0 238 0 430 113 7 8 75 1 0 26 2 0 35 2 1 50 1 0 15 chain 33830 chr6 171115067 + 143408342 143408849 LTR17 781 - 0 529 77892 15 16 38 211 53 54 136 1 0 75 chain 3913 chr6 171115067 + 143410614 143410663 MIR 256 + 142 191 208644 49 chain 7146 chr6 171115067 + 143413145 143413232 Tigger1 2417 - 851 938 176441 87 chain 26773 chr6 171115067 + 143424633 143424916 AluYa5 310 - 0 283 97073 283 chain 43316 chr6 171115067 + 143441910 143442412 MER9a3 513 + 0 513 65021 16 1 12 485 chain 22057 chr6 171115067 + 143461121 143461453 THE1B 368 - 29 368 119987 17 16 15 65 1 0 12 1 0 16 0 1 4 0 8 7 6 8 17 1 0 169 chain 28828 chr6 171115067 + 143489406 143489726 L1PA4 6152 - 11 331 89768 320 chain 3210 chr6 171115067 + 143491941 143492001 L1PB1 5432 + 5365 5422 220735 5 1 0 22 1 0 8 5 4 18 chain 182549 chr6 171115067 + 143492301 143495343 L1PB1 5432 - 104 3780 20732 20 24 12 16 2 1 43 6 5 10 3 1 52 2 0 9 2 0 3 2 0 12 2 1 5 1 0 21 155 14 293 29 29 152 6 0 248 31 1154 14 9 8 293 2 1 84 2 3 243 0 1 33 0 1 56 2 0 15 321 0 762 5 9 52 chain 23160 chr6 171115067 + 143504333 143504630 AluSc5 308 - 11 308 114855 147 0 3 6 6 3 138 chain 27191 chr6 171115067 + 143531112 143531475 THE1C 375 + 7 375 95626 179 11 12 7 0 1 94 0 4 45 1 0 26 chain 13130 chr6 171115067 + 143548017 143548247 MER30 238 + 0 238 147723 15 11 12 4 1 0 63 3 18 5 3 0 45 8 7 21 3 0 48 chain 26950 chr6 171115067 + 143567361 143567709 THE1B 368 - 10 368 96452 51 5 1 134 1 0 112 0 15 45 chain 557810 chr6 171115067 + 143623362 143629488 L1PA3long 6157 - 0 6151 523 155 1 0 1681 0 1 1188 0 2 1270 0 25 784 0 2 515 4 0 528 chain 40150 chr6 171115067 + 143635893 143636402 MER75 514 - 0 514 69106 9 0 1 10 1 0 89 0 5 400 chain 11104 chr6 171115067 + 143637477 143637610 L1PBa 3878 - 2440 2573 155790 133 chain 234275 chr6 171115067 + 143637622 143640760 L1PB1 5432 + 2299 5430 17080 130 0 1 62 8 0 342 3 0 173 4 1 55 0 7 255 0 1 144 0 11 251 1 0 260 0 15 169 0 1 294 0 4 154 2 1 127 0 1 46 1 2 292 20 18 22 1 0 6 1 0 13 22 16 47 2 1 15 1 0 45 1 0 15 63 48 26 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 19104 chr6 171115067 + 143699193 143699557 THE1C 375 + 0 375 129806 13 2 0 34 0 6 13 46 50 19 0 4 32 42 42 136 1 0 26 chain 3238 chr6 171115067 + 143764248 143764282 MIR 256 - 116 150 220266 34 chain 53147 chr6 171115067 + 143768914 143769550 L1PA5 6144 + 5515 6142 56925 213 1 0 95 8 4 161 1 0 147 3 0 7 chain 5209 chr6 171115067 + 143770945 143771024 5S 121 + 0 88 192919 23 8 17 48 chain 103853 chr6 171115067 + 143789806 143791021 L1PA5 6144 - 6 1207 35756 139 0 4 23 17 1 144 1 0 99 2 1 790 chain 21800 chr6 171115067 + 143847418 143847862 L1MA5A 2387 + 1988 2374 121019 45 3 0 7 1 3 25 0 3 37 7 6 18 1 0 23 2 0 32 1 0 27 4 1 17 28 0 64 41 21 13 1 0 10 1 0 22 2 0 12 chain 20122 chr6 171115067 + 143851922 143852281 L1PB3 3668 + 3221 3558 126763 69 1 0 76 26 25 87 44 26 24 3 1 29 chain 5068 chr6 171115067 + 143944187 143944262 Kanga2_a 737 + 521 594 194450 62 2 0 11 chain 3582 chr6 171115067 + 143948693 143948735 L1MB5 1630 - 31 73 213952 42 chain 11943 chr6 171115067 + 143965986 143966206 L1PB1 5432 - 12 213 152428 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 10 1 13 7 6 40 1 0 18 chain 21144 chr6 171115067 + 143966207 143966560 L1PB1 5432 + 4888 5207 123392 64 0 1 137 0 1 11 40 12 20 1 0 7 6 5 11 5 1 11 2 0 38 chain 142295 chr6 171115067 + 143970464 143972397 L1PA11 4918 + 2655 4567 25760 94 6 5 163 2 0 157 0 1 20 0 1 116 0 2 13 0 1 193 6 7 340 4 12 514 10 4 24 10 6 45 23 21 13 3 0 67 2 0 8 7 6 19 22 13 10 17 13 11 1 0 13 chain 12625 chr6 171115067 + 143977464 143977648 MER30 238 - 0 201 149749 98 22 39 64 chain 17478 chr6 171115067 + 143978141 143978385 L1PA8 5853 + 5612 5853 134308 66 2 1 8 2 1 52 2 1 19 1 0 86 0 1 6 chain 25724 chr6 171115067 + 143981324 143981681 THE1B 368 - 0 368 101199 61 9 5 129 2 1 18 0 1 98 2 17 38 chain 24012 chr6 171115067 + 143984022 143984371 L1PA16 3655 - 77 424 110262 114 4 5 49 1 0 104 18 16 59 chain 417006 chr6 171115067 + 143987012 143992056 L1PA7 6471 - 2 5084 9602 148 12 0 7 0 7 596 0 1 7 1 0 754 3 2 9 0 4 392 5 0 178 3 4 107 6 11 181 0 1 225 1 0 275 6 11 284 2 1 632 5 1 60 0 27 268 0 1 9 4 7 95 0 4 129 1 2 261 1 0 4 0 1 20 1 0 88 0 1 156 0 3 108 chain 5073 chr6 171115067 + 144035142 144035211 MADE1 96 + 4 88 194386 25 0 16 20 1 0 23 chain 15811 chr6 171115067 + 144043958 144044186 L1MA4 2864 - 223 429 138922 143 24 2 61 chain 5871 chr6 171115067 + 144048480 144048895 L1MA4A 3247 - 54 222 186470 6 7 0 8 3 0 31 26 20 21 32 29 41 228 0 12 chain 43112 chr6 171115067 + 144061049 144061601 MER41A 554 - 0 554 65275 174 1 2 16 0 3 5 3 0 272 0 1 81 chain 26762 chr6 171115067 + 144105776 144106132 THE1A 353 - 0 353 97117 161 3 1 81 4 3 107 chain 122707 chr6 171115067 + 144106137 144107695 THE1A-int 1579 - 5 1579 30160 100 0 1 124 4 0 47 1 0 364 0 2 9 19 4 21 6 34 376 2 0 5 9 14 456 0 2 15 chain 29083 chr6 171115067 + 144107695 144108048 THE1A 353 - 0 353 88617 243 2 1 58 0 1 50 chain 433381 chr6 171115067 + 144117556 144123137 L1PA7 6471 - 7 5308 9227 155 1 2 421 0 1 264 2 1 161 2 1 25 2 1 220 0 2 45 1 4 19 0 7 73 1 4 773 0 13 479 7 8 687 15 20 286 0 1 188 314 0 520 0 1 128 2 0 485 0 1 305 chain 8071 chr6 171115067 + 144124303 144124402 MER75 514 - 23 122 170644 99 chain 460208 chr6 171115067 + 144172713 144178208 L1PA7 6471 - 2 5647 8393 10 2 0 64 0 2 693 0 2 77 1 0 18 0 4 601 0 102 350 13 12 363 0 18 319 3 1 19 1 5 306 1 0 12 0 1 31 5 6 18 0 3 785 8 10 29 0 1 163 1 2 93 0 1 393 0 12 121 7 5 420 0 1 161 8 12 399 chain 29850 chr6 171115067 + 144189362 144189807 MLT2A1 477 - 0 477 85285 6 0 4 30 18 52 26 0 2 46 14 15 101 5 0 24 3 0 121 1 0 50 chain 419419 chr6 171115067 + 144189816 144197708 HERVL-int 5654 - 9 5650 9547 420 0 1 186 0 348 62 0 3 139 14 5 735 1 0 4 0 1 5 25 0 27 0 13 232 0 1 20 0 1 392 0 2 192 31 35 487 0 1 291 0 1 122 2 1 84 6 1 6 0 5 41 7 0 6 0 7 25 1 5 135 5 9 39 3 0 92 2619 0 208 5 13 163 0 1 123 0 6 60 18 23 147 0 3 5 4 1 689 0 3 14 chain 26469 chr6 171115067 + 144193690 144194041 THE1A 353 - 0 353 98171 243 1 0 9 14 17 84 chain 122433 chr6 171115067 + 144194046 144195596 THE1A-int 1579 - 5 1579 30241 152 1 2 232 0 1 163 1 16 312 9 14 16 4 3 274 0 1 81 0 1 130 0 1 175 chain 25902 chr6 171115067 + 144195596 144195926 THE1A 353 - 0 328 100428 243 2 1 79 1 0 5 chain 33406 chr6 171115067 + 144197712 144198172 MLT2A1 477 - 0 477 78554 51 7 0 10 10 38 171 12 11 27 4 1 168 chain 326865 chr6 171115067 + 144228432 144233547 L1PA11 4918 - 289 4876 12309 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 5 4 11 12 9 10 8 3 9 4 0 20 1 0 16 2 0 64 2 1 13 2 1 62 1 0 279 1 0 226 7 9 609 12 16 9 5 1 227 35 44 190 12 10 18 172 46 107 13 0 294 17 20 28 20 15 51 0 1 33 15 20 126 0 3 50 9 0 52 52 0 32 3 0 72 1 0 202 6 8 115 1 0 12 311 0 58 2 0 297 0 10 243 0 1 46 1 0 136 1 4 123 4 5 125 0 1 179 1 0 50 2 0 7 6 5 37 8 5 32 chain 123707 chr6 171115067 + 144236563 144238136 THE1B-int 1605 + 0 1599 29810 432 0 25 205 0 1 4 7 7 396 9 5 101 0 2 173 0 1 85 0 1 161 chain 23124 chr6 171115067 + 144246661 144246960 AluSp 311 - 0 300 115022 179 3 0 69 11 15 37 chain 25945 chr6 171115067 + 144251514 144251813 AluYc3 301 - 5 301 100230 24 2 0 159 1 0 113 chain 3431 chr6 171115067 + 144300374 144300413 HY1 111 - 63 102 216542 39 chain 61902 chr6 171115067 + 144330654 144331364 L1PA7 6471 - 1 708 51944 142 3 0 565 chain 95626 chr6 171115067 + 144331373 144332517 L1PA7 6471 + 4593 5740 37924 80 2 1 187 1 0 383 1 0 87 5 4 67 0 2 149 0 1 60 0 3 92 0 1 30 chain 32359 chr6 171115067 + 144337192 144337656 MLT2A1 477 - 0 477 80258 38 3 1 11 4 0 13 17 31 201 29 33 6 0 1 142 chain 22706 chr6 171115067 + 144343635 144343986 THE1B 368 + 0 368 117047 79 9 10 80 2 0 6 2 4 5 1 0 14 0 3 13 0 4 9 2 12 5 1 0 98 1 2 24 chain 115468 chr6 171115067 + 144351505 144353165 L1PB1 5432 - 10 1632 32620 18 1 0 12 1 0 22 1 0 24 2 0 13 10 7 18 19 8 4 1 0 15 1 0 44 1 0 16 2 1 52 2 0 9 5 1 12 1 0 8 1 0 16 29 27 51 0 7 89 0 1 14 25 1 67 13 15 34 5 12 72 0 4 105 3 0 42 3 4 777 chain 41350 chr6 171115067 + 144356248 144356798 MLT2A2 560 - 8 560 67471 148 19 20 4 1 0 174 0 1 82 0 1 122 chain 523013 chr6 171115067 + 144362334 144368467 L1PA6 6164 - 12 6163 4864 135 1 0 6 0 1 305 6 3 197 0 4 84 1 0 101 0 4 16 0 4 203 0 1 15 0 1 1376 2 0 478 0 1 476 0 4 146 1 4 84 0 1 39 2 0 138 10 0 371 1 0 50 3 0 447 0 1 32 0 5 603 0 17 289 6 1 17 1 0 491 chain 27831 chr6 171115067 + 144375434 144375880 L1PA8 5853 + 5393 5837 93582 171 1 0 41 8 6 45 47 46 38 2 1 19 1 0 10 0 1 8 0 3 55 chain 8031 chr6 171115067 + 144377656 144377793 L1MC1 2226 - 183 328 170861 51 24 33 41 1 0 20 chain 25916 chr6 171115067 + 144397408 144397831 MSTC 436 + 14 432 100350 125 25 1 15 0 16 135 18 24 6 6 0 30 0 7 7 9 5 47 chain 5790 chr6 171115067 + 144397831 144397932 MLT1C 463 - 366 463 187254 34 4 0 25 13 13 25 chain 14602 chr6 171115067 + 144403759 144403925 L1PA2 6032 + 5867 6032 142576 5 1 0 160 chain 28332 chr6 171115067 + 144437461 144437787 LTR17 781 - 455 781 91827 326 chain 354863 chr6 171115067 + 144438102 144442167 HERV17-int 4347 - 0 4067 11480 347 0 1 4 1 0 166 0 1 4 1 0 260 0 1 211 7 6 220 1 0 2088 0 2 155 6 7 594 chain 39510 chr6 171115067 + 144442228 144442698 LTR17 781 - 53 522 70010 401 1 0 68 chain 6162 chr6 171115067 + 144465762 144465853 MER3 215 + 94 190 183858 42 1 0 31 1 7 16 chain 7570 chr6 171115067 + 144469066 144469160 MLT2B4 540 - 446 540 173735 94 chain 23523 chr6 171115067 + 144500087 144500482 THE1B 368 - 0 368 113000 118 26 6 51 31 24 52 5 6 63 0 1 31 3 1 15 chain 15874 chr6 171115067 + 144507283 144507457 L1PA5 6144 + 5963 6137 138724 174 chain 24436 chr6 171115067 + 144519619 144519993 THE1C 375 - 0 375 107878 33 11 10 134 9 15 9 5 1 109 10 1 7 0 9 47 chain 6403 chr6 171115067 + 144537694 144537766 tRNA-Leu-TTA 75 + 3 75 182004 72 chain 159116 chr6 171115067 + 144561823 144564200 L1MA3 4352 - 530 2816 23450 409 5 6 58 0 3 100 1 2 77 67 18 69 7 25 69 0 2 14 0 4 176 5 4 41 0 1 150 4 7 49 0 1 21 5 0 14 5 0 6 7 12 93 26 0 78 1 0 532 40 0 80 9 12 36 1 0 28 34 29 60 chain 26303 chr6 171115067 + 144592484 144592821 L1PA11 4918 + 3710 4047 98820 15 1 0 139 2 0 5 0 2 105 5 6 65 chain 20030 chr6 171115067 + 144617297 144617592 MER1B 344 + 37 344 127042 118 22 23 89 8 19 58 chain 26982 chr6 171115067 + 144702648 144703001 THE1B 368 + 0 368 96341 44 11 26 19 0 1 79 1 0 199 chain 35056 chr6 171115067 + 144710080 144710530 MER4A1 472 - 0 472 76105 224 1 22 125 0 2 69 2 1 29 chain 4068 chr6 171115067 + 144713275 144713326 MER33 330 + 158 209 206353 51 chain 23993 chr6 171115067 + 144731567 144732093 L1PB1 5432 - 5 455 110365 4 1 0 5 2 0 14 1 0 13 1 0 21 2 0 24 2 0 14 1 0 4 11 9 11 26 9 4 1 0 15 1 0 44 18 16 50 3 1 10 11 7 6 1 0 12 2 0 20 45 11 126 chain 6837 chr6 171115067 + 144734788 144734878 Tigger3b 1229 + 149 239 178681 90 chain 10414 chr6 171115067 + 144753132 144753262 L1PA4 6152 - 10 139 158625 69 4 3 57 chain 142996 chr6 171115067 + 144753814 144755474 SVA_D 2077 - 0 2021 25653 12 8 0 659 0 50 9 0 2 30 0 1 28 13 100 23 47 276 831 chain 2539 chr6 171115067 + 144754596 144754643 SVA_D 2077 - 1263 1503 133788 29 0 193 18 chain 101751 chr6 171115067 + 144762242 144763590 THE1B-int 1605 - 0 1605 36331 68 1 0 350 9 10 160 0 10 199 3 7 78 25 28 77 0 1 160 0 25 72 0 1 13 0 213 133 chain 114117 chr6 171115067 + 144790839 144792168 SVA_B 1603 - 2 1602 33065 572 0 164 104 30 67 183 0 39 428 0 31 12 chain 135929 chr6 171115067 + 144815259 144816842 LTR12C 1709 - 0 1709 26849 481 0 4 106 3 1 5 1 0 275 1 0 15 0 119 381 0 1 72 0 6 243 chain 518723 chr6 171115067 + 144823396 144829824 L1PA7 6471 - 4 6471 5305 9 4 0 318 0 2 8 7 6 124 0 2 99 0 6 272 1 0 152 0 2 422 3 7 58 0 1 305 0 8 32 1 0 422 0 2 52 27 6 150 1 0 394 6 4 101 1 0 16 0 1 44 0 1 55 0 8 737 6 0 541 4 5 122 3 0 65 1 0 5 0 1 275 0 1 65 1 0 347 0 4 48 0 1 390 4 31 335 10 0 224 14 34 147 chain 164377 chr6 171115067 + 144845803 144847912 L1PBa 3878 - 167 2278 22763 157 6 3 133 0 1 160 0 4 9 0 1 21 2 0 87 0 1 85 6 7 159 0 4 76 0 3 76 0 1 14 3 0 46 1 0 684 0 4 361 9 0 14 chain 25964 chr6 171115067 + 144853396 144853757 THE1C 375 - 0 375 100159 26 1 0 163 1 0 32 21 37 117 chain 11652 chr6 171115067 + 144879636 144879775 L1PA4 6152 + 6009 6149 153686 36 1 2 102 chain 3436 chr6 171115067 + 144881953 144881997 MER46C 351 + 182 233 216466 29 0 7 15 chain 67040 chr6 171115067 + 144893530 144894376 L1PA8 5853 - 0 871 49640 65 1 2 25 2 1 19 2 1 52 1 0 9 1 0 71 2 0 46 1 0 290 0 1 144 0 31 81 7 5 21 0 1 6 chain 61658 chr6 171115067 + 144919211 144920060 MER4D1 891 - 5 891 52055 23 0 2 197 0 3 57 1 8 76 1 0 90 1 0 12 5 4 149 11 7 8 0 32 218 chain 32186 chr6 171115067 + 144957305 144957689 L1PA7 6471 + 6085 6469 80550 52 0 3 214 3 0 115 chain 12284 chr6 171115067 + 144959967 144960179 AluJr 308 + 41 260 151062 70 1 0 7 35 37 44 1 7 54 chain 15737 chr6 171115067 + 144997663 144997846 L1PA7 6471 - 1 184 139150 183 chain 72322 chr6 171115067 + 144998254 144999217 L1PA8 5853 - 6 979 47324 87 1 0 15 10 9 29 15 14 9 3 2 15 0 1 4 1 0 54 2 0 29 0 1 14 1 0 235 0 1 138 6 20 161 2 0 3 1 0 16 1 5 111 chain 21211 chr6 171115067 + 145003192 145003806 L1MA2 4263 - 43 528 123173 14 5 3 15 268 146 67 9 8 9 1 0 152 12 9 62 chain 3011 chr6 171115067 + 145010599 145010634 L1PBa 3878 - 3367 3402 224795 35 chain 121469 chr6 171115067 + 145014410 145016042 L1PA13 3608 - 120 1742 30545 20 1 0 20 9 5 48 1 0 9 1 0 46 6 5 62 2 0 114 1 0 126 3 1 190 0 2 92 6 7 65 0 1 67 0 2 184 8 6 175 1 0 175 0 4 112 5 2 7 0 1 7 1 0 36 1 0 31 chain 25085 chr6 171115067 + 145034785 145035074 AluSp 311 + 11 300 104381 289 chain 6579 chr6 171115067 + 145097894 145097997 MADE1 96 - 1 96 180616 44 13 5 46 chain 25263 chr6 171115067 + 145107425 145107719 AluSc5 308 - 14 308 103400 294 chain 21559 chr6 171115067 + 145113408 145113694 AluSp 311 + 9 293 121926 20 1 0 21 21 20 223 chain 113753 chr6 171115067 + 145116024 145117381 L1PA7 6471 - 16 1332 33161 753 0 1 80 1 0 120 50 9 353 chain 4083 chr6 171115067 + 145130125 145130206 L1MA9 1812 - 147 226 206159 14 1 0 4 0 1 27 14 12 21 chain 38953 chr6 171115067 + 145136463 145137017 MLT2A2 560 - 0 560 70798 147 10 21 80 5 11 28 0 1 32 0 1 35 0 1 42 18 0 142 1 5 14 chain 19592 chr6 171115067 + 145147079 145147293 L1PA4 6152 + 5937 6151 128404 214 chain 14671 chr6 171115067 + 145180111 145180472 THE1B 368 + 0 368 142358 15 3 1 31 68 76 45 10 8 22 24 0 8 15 44 18 1 0 7 1 0 93 chain 30423 chr6 171115067 + 145190982 145191392 LTR7 482 - 0 482 83646 176 0 1 15 0 1 27 6 38 109 8 46 69 chain 6511 chr6 171115067 + 145192964 145193128 MER2 342 + 141 311 181151 61 8 11 17 36 37 21 10 12 11 chain 8366 chr6 171115067 + 145194105 145194200 MER41B 635 - 540 635 169040 95 chain 12473 chr6 171115067 + 145239829 145240005 MER1A 529 + 352 529 150364 104 14 15 58 chain 2851 chr6 171115067 + 145242341 145242463 MER3 215 - 25 153 227842 16 78 84 28 chain 28768 chr6 171115067 + 145244310 145244742 LTR7Y 441 + 0 439 90029 103 9 0 57 68 84 195 chain 285682 chr6 171115067 + 145244744 145248344 HERVH-int 3825 + 0 3825 14309 532 5 0 38 126 0 10 1 0 24 4 55 17 0 42 8 1 0 30 1 2 6 0 2 12 0 3 44 1 11 537 0 2 66 0 1 53 5 8 178 8 35 331 10 13 290 1 2 680 5 0 38 9 11 5 0 3 29 10 220 260 0 2 225 chain 29118 chr6 171115067 + 145249560 145249994 LTR7Y 441 + 0 441 88462 103 9 0 57 68 84 197 chain 25763 chr6 171115067 + 145258575 145258943 THE1B 368 - 11 368 101031 147 42 32 9 1 0 169 chain 4599 chr6 171115067 + 145267278 145267612 MLT1A 405 + 4 373 199641 19 49 60 19 0 11 7 120 148 13 63 48 44 chain 9556 chr6 171115067 + 145269498 145269628 MSTA 426 + 254 405 162802 38 4 25 88 chain 5138 chr6 171115067 + 145277375 145277464 MADE1 96 - 0 96 193688 37 1 17 15 9 0 27 chain 507345 chr6 171115067 + 145292853 145299002 L1PA6 6164 - 8 6164 6378 833 0 4 365 2 0 264 1 0 239 0 1 64 0 4 324 0 1 105 21 0 211 1 0 524 0 1 26 0 1 616 10 12 812 0 2 45 0 8 890 0 17 218 1 0 119 9 1 449 chain 25638 chr6 171115067 + 145360829 145361146 AluY 311 + 0 311 101542 123 10 4 184 chain 4907 chr6 171115067 + 145384071 145384150 MADE1 96 + 0 96 196191 24 8 24 21 0 1 26 chain 15629 chr6 171115067 + 145393275 145393448 L1PA2 6032 - 1500 1673 139497 173 chain 138072 chr6 171115067 + 145393448 145394938 L1PA2 6032 + 4542 6032 26473 1490 chain 4715 chr6 171115067 + 145400025 145400082 MER57B2 428 - 0 57 198337 57 chain 72473 chr6 171115067 + 145418955 145419978 MER11A 1151 - 0 1144 47280 163 4 5 16 1 0 30 1 2 14 0 1 58 19 54 31 0 1 86 5 6 145 0 1 94 11 12 138 4 0 61 20 13 42 8 0 24 0 99 48 chain 285685 chr6 171115067 + 145425984 145429592 HERVH-int 3825 - 0 3825 14308 225 9 11 222 14 15 14 8 218 36 12 14 772 0 1 292 1 5 284 4 31 552 0 4 350 1 0 49 2 1 8 20 0 24 58 11 30 1 38 14 7 1 14 4 0 9 1 0 10 1 0 24 0 1 4 1 0 11 1 0 55 1 2 4 1 0 246 0 11 212 chain 48768 chr6 171115067 + 145432525 145433103 LTR10C 591 + 0 586 59898 231 0 2 120 0 1 183 0 5 44 chain 121994 chr6 171115067 + 145446696 145448206 THE1B-int 1605 + 38 1572 30387 138 2 0 250 0 25 680 4 5 436 chain 14843 chr6 171115067 + 145453944 145454243 L1MA2 4263 - 3788 4075 141800 85 31 9 35 0 1 4 1 0 8 1 0 25 41 52 68 chain 73983 chr6 171115067 + 145454243 145455125 MER11D 897 + 0 897 46522 282 1 0 309 12 28 278 chain 94755 chr6 171115067 + 145498784 145500000 L1P3 4156 + 0 1213 38149 108 2 1 142 2 1 67 2 1 81 1 0 208 0 3 303 0 6 8 8 1 150 1 0 133 chain 267751 chr6 171115067 + 145500000 145503425 L1PA8 5853 + 602 5678 15307 28 0 1 243 0 4 527 2 1 313 23 31 29 1 1612 84 0 10 142 4 5 76 25 28 318 0 4 171 0 1 20 1 2 4 1 0 279 15 21 63 13 17 884 5 6 36 1 0 47 2 0 36 0 1 32 chain 5809 chr6 171115067 + 145503858 145503928 tRNA-Gln-CAA 69 + 0 69 187059 57 1 0 12 chain 6019 chr6 171115067 + 145557961 145558049 MER3 215 + 66 144 185055 70 10 0 8 chain 53506 chr6 171115067 + 145558694 145559449 MER4E 760 + 0 760 56676 23 0 1 146 3 1 58 1 4 100 51 53 48 1 0 317 0 2 7 chain 46234 chr6 171115067 + 145561363 145561953 L1PA8 5853 - 0 588 61823 93 1 0 19 2 1 52 4 6 75 3 1 42 1 0 89 0 1 209 chain 5543 chr6 171115067 + 145567965 145568042 MER66B 489 + 406 483 189634 24 0 1 32 2 1 19 chain 32197 chr6 171115067 + 145601750 145602149 L1PA7 6471 + 6070 6465 80527 241 8 7 141 3 0 6 chain 424566 chr6 171115067 + 145618737 145623510 L1PA5 6144 - 12 4798 9430 617 3 4 1632 1 0 502 1 9 216 0 2 1122 0 1 473 0 2 206 chain 22223 chr6 171115067 + 145626668 145626976 MLT2A1 477 - 94 405 119252 12 3 0 6 7 8 183 1 5 28 0 1 68 chain 24528 chr6 171115067 + 145635861 145636210 THE1A 353 - 2 353 107386 109 16 19 8 3 0 6 6 9 90 1 0 110 chain 55497 chr6 171115067 + 145643668 145644339 L1PA5 6144 - 1 674 55417 151 1 2 111 0 1 408 chain 36525 chr6 171115067 + 145644339 145644762 L1PA5 6144 + 5043 5466 74207 423 chain 4349 chr6 171115067 + 145657419 145657587 MER58A 224 + 47 220 202607 32 104 109 32 chain 22849 chr6 171115067 + 145663013 145663285 AluY 311 + 0 289 116346 35 0 9 8 0 8 229 chain 31622 chr6 171115067 + 145679555 145679978 LTR7B 505 - 9 505 81448 42 14 13 54 0 1 24 1 0 82 0 2 26 6 68 66 0 10 108 chain 58911 chr6 171115067 + 145680997 145681781 MER4E1 777 - 0 777 53448 22 0 2 174 12 5 31 6 5 478 0 2 11 0 4 18 7 0 25 chain 48033 chr6 171115067 + 145709658 145710223 L1PA7 6471 - 7 577 60454 182 0 1 312 0 4 71 chain 5988 chr6 171115067 + 145725219 145725345 L1MA1 4479 - 289 401 185346 23 31 20 5 1 0 35 2 0 29 chain 3643 chr6 171115067 + 145756768 145756809 MSTA 426 + 370 411 212915 41 chain 33502 chr6 171115067 + 145763027 145763450 THE1A-int 1579 - 1150 1578 78407 145 0 2 121 0 1 143 0 2 14 chain 21105 chr6 171115067 + 145773538 145773840 AluY 311 + 39 298 123536 94 27 1 73 17 0 91 chain 3013 chr6 171115067 + 145780385 145780428 MER31B 477 - 396 436 224765 5 3 0 35 chain 14829 chr6 171115067 + 145785231 145785535 THE1D 372 + 45 372 141847 27 23 33 24 1 5 32 0 6 6 52 56 102 4 3 33 chain 80877 chr6 171115067 + 145785979 145786878 L1HS 6032 - 4374 5279 43240 380 0 5 309 0 1 210 chain 126319 chr6 171115067 + 145786878 145788288 L1PA3long 6157 + 4750 6156 29003 433 5 1 972 chain 27207 chr6 171115067 + 145789708 145790130 L1MA3 4352 + 3017 3433 95571 64 1 2 61 6 5 43 3 0 10 26 25 20 1 0 138 1 0 48 chain 95022 chr6 171115067 + 145795618 145796759 L1PA7 6471 + 5320 6469 38087 8 2 0 5 0 2 112 0 3 165 1 0 82 0 1 342 0 3 156 1 4 253 1 0 13 chain 20503 chr6 171115067 + 145817864 145818083 AluYb8 318 - 10 229 125623 219 chain 188598 chr6 171115067 + 145824358 145826393 L1PA2 6032 + 3996 6031 20184 2035 chain 9052 chr6 171115067 + 145853187 145853371 HERVK22-int 3844 + 3662 3844 165308 88 26 25 12 0 1 11 26 24 21 chain 50318 chr6 171115067 + 145858734 145859386 L1PA8 5853 - 0 643 58774 92 4 3 17 2 1 52 1 0 9 2 1 70 2 0 44 1 0 219 2 0 135 chain 14644 chr6 171115067 + 145882983 145883192 L1PA8 5853 + 5638 5847 142437 32 1 2 7 1 0 11 1 0 50 2 1 19 1 0 15 0 3 69 chain 31494 chr6 171115067 + 145890944 145891390 MLT2A1 477 - 0 477 81652 37 9 3 13 3 39 180 1 2 23 0 1 8 3 0 20 8 9 33 0 1 108 chain 464600 chr6 171115067 + 145891390 145897028 HERVL-int 5654 - 0 5654 8234 113 14 15 19 1 2 77 0 5 1145 9 10 365 1 0 4 0 1 104 0 1 228 0 2 120 0 1 231 0 1 365 20 24 570 1 0 112 18 15 102 1 0 848 0 1 182 0 1 827 9 10 34 0 1 118 chain 21192 chr6 171115067 + 145900051 145900293 L1PA4 6152 + 5905 6146 123233 229 1 0 12 chain 58595 chr6 171115067 + 145913159 145913872 L1PA3long 6157 - 10 754 53641 102 0 1 48 14 14 378 0 31 33 1 0 137 chain 30245 chr6 171115067 + 145918013 145918329 AluYb8 318 - 2 318 84070 316 chain 124477 chr6 171115067 + 145936642 145938199 THE1B-int 1605 + 14 1605 29549 23 6 8 85 0 1 299 0 25 173 1 3 793 0 4 177 chain 29146 chr6 171115067 + 145939545 145939917 THE1C 375 + 0 375 88330 135 0 4 211 1 0 25 chain 451187 chr6 171115067 + 145984393 145989310 L1PA2 6032 + 12 6029 8730 239 1 1094 5 0 2 726 0 2 1910 0 2 1415 0 1 621 chain 416659 chr6 171115067 + 145994443 145999571 L1P2 5180 + 2 5178 9617 148 2 1 43 1 0 53 1 0 172 12 8 88 1 0 53 0 1 45 15 0 12 0 5 156 0 15 166 0 1 18 5 12 48 4 6 103 2 0 112 0 2 185 5 9 925 1 5 321 0 6 320 0 1 135 1 0 6 1 0 104 6 5 394 3 0 5 1 0 241 0 1 327 0 1 99 0 4 616 0 29 81 1 0 46 1 0 38 1 0 4 chain 44844 chr6 171115067 + 146000000 146000552 L1PA6 6164 + 5619 6162 63235 296 27 18 229 chain 123915 chr6 171115067 + 146001529 146002887 L1PA3long 6157 - 0 1358 29728 1358 chain 21493 chr6 171115067 + 146003228 146003530 THE1B 368 - 65 367 122166 129 1 0 91 32 33 49 chain 29901 chr6 171115067 + 146011364 146011679 AluYb8 318 + 0 315 85091 315 chain 93112 chr6 171115067 + 146018241 146019309 MER11C 1089 - 16 1089 38626 60 0 1 336 1 0 82 0 1 25 2 1 333 0 5 229 chain 113467 chr6 171115067 + 146030980 146032259 L1PA4 6152 + 4867 6143 33233 434 1 0 18 2 0 824 chain 25948 chr6 171115067 + 146035690 146036048 THE1B 368 - 0 368 100220 18 3 0 5 0 3 18 2 3 28 1 0 101 4 0 18 1 0 115 0 15 44 chain 233992 chr6 171115067 + 146038186 146040767 L1PA3long 6157 + 3577 6156 17091 1626 1 0 122 2 0 224 0 1 606 chain 17515 chr6 171115067 + 146052651 146052868 L1PA8A 6298 + 6070 6284 134224 183 3 0 31 chain 202603 chr6 171115067 + 146060690 146063134 L1PA7 6471 - 10 2451 19018 140 0 1 37 0 2 574 1 2 84 2 1 429 1 0 423 0 1 311 0 1 344 7 1 76 1 0 14 chain 100845 chr6 171115067 + 146063134 146064396 L1P3 4156 + 378 1628 36492 23 2 0 173 15 1 93 16 15 451 1 2 96 0 4 392 chain 42099 chr6 171115067 + 146071536 146072084 MLT2A2 560 + 0 560 66499 180 1 0 222 0 11 100 3 1 36 0 4 6 chain 2904 chr6 171115067 + 146086293 146086326 THE1B-int 1605 + 123 156 226987 33 chain 70317 chr6 171115067 + 146090974 146091728 L1HS 6032 - 281 1035 48255 754 chain 26285 chr6 171115067 + 146091728 146092020 L1HS 6032 + 5740 6028 98879 281 4 0 7 chain 275487 chr6 171115067 + 146095941 146099588 L1PA8 5853 - 0 3654 14900 95 1 0 15 8 7 37 7 0 6 6 11 10 0 2 62 7 5 39 2 1 430 28 31 8 3 0 33 6 4 48 5 3 118 0 1 266 0 1 82 5 0 544 0 2 32 12 15 93 0 2 215 0 1 37 0 2 44 1 0 26 0 1 92 38 39 8 1 0 24 0 1 362 0 1 128 0 1 421 0 1 168 0 4 34 0 1 40 chain 27596 chr6 171115067 + 146107215 146107587 MLT2A1 477 - 92 477 94356 12 0 4 45 1 0 120 1 0 30 1 5 27 1 2 43 0 6 91 chain 70489 chr6 171115067 + 146107587 146108477 HERVL-int 5654 - 0 892 48171 219 0 1 14 1 2 186 8 7 23 1 0 54 4 5 264 13 14 103 chain 122567 chr6 171115067 + 146111404 146112979 THE1B-int 1605 - 0 1605 30202 264 7 9 19 4 5 164 5 9 192 3 0 13 2 0 45 0 1 428 1 26 160 0 2 268 chain 18203 chr6 171115067 + 146113050 146113332 THE1B 368 - 81 368 132323 93 7 6 11 4 5 104 20 24 19 0 1 24 chain 8065 chr6 171115067 + 146122564 146122666 MER30 238 + 133 238 170669 20 0 6 39 3 0 40 chain 33135 chr6 171115067 + 146138112 146138545 MLT2A1 477 - 0 470 79007 6 0 4 33 13 49 210 10 7 161 chain 6767 chr6 171115067 + 146138561 146138680 MLT1A1 405 - 16 112 179193 35 22 0 19 1 0 42 chain 29531 chr6 171115067 + 146149305 146149675 THE1C 375 + 8 375 86526 117 3 0 72 0 1 152 1 0 25 chain 174720 chr6 171115067 + 146173609 146175506 L1PA2 6032 - 1780 3683 21508 928 0 6 969 chain 161976 chr6 171115067 + 146175506 146177266 L1PA2 6032 + 4270 6030 23054 1760 chain 121545 chr6 171115067 + 146192081 146193744 L1PA11 4918 + 2910 4567 30521 147 7 6 208 4 5 77 0 9 502 2 0 5 0 2 116 0 1 185 0 1 221 1 0 61 0 1 15 19 16 20 44 31 15 1 0 13 chain 6296 chr6 171115067 + 146196374 146196537 MER20 218 + 52 212 182835 23 23 21 35 33 36 27 4 0 18 chain 60030 chr6 171115067 + 146198487 146199235 MER4E 760 + 3 753 52809 19 0 2 240 0 1 7 2 1 480 chain 6561 chr6 171115067 + 146199649 146199751 L1MB7 1623 - 488 586 180776 29 12 9 48 1 0 12 chain 105767 chr6 171115067 + 146228955 146230340 L1PA8A 6298 - 8 1419 35314 71 36 37 15 2 0 75 0 4 502 0 3 11 0 2 79 0 3 103 7 9 32 0 5 251 0 2 45 0 4 74 0 6 72 4 0 6 chain 219994 chr6 171115067 + 146291258 146293740 L1PA4 6152 - 9 2484 17878 130 7 0 2345 chain 135972 chr6 171115067 + 146301799 146303318 L1PA4 6152 - 0 1520 26840 113 0 1 1406 chain 55270 chr6 171115067 + 146311398 146312077 THE1B-int 1605 - 899 1603 55543 255 0 25 424 chain 27319 chr6 171115067 + 146312079 146312436 THE1B 368 - 0 368 95210 75 1 0 101 2 0 24 1 0 103 6 21 44 chain 209887 chr6 171115067 + 146315906 146318251 L1PA4 6152 - 1 2349 18497 1050 2 1 752 0 4 541 chain 26699 chr6 171115067 + 146332615 146333073 L1PA14 3548 - 63 503 97328 20 1 0 10 6 0 41 1 0 16 1 0 11 1 0 7 5 3 34 15 11 62 0 6 43 1 0 79 0 1 4 1 0 6 2 0 17 24 19 50 chain 21613 chr6 171115067 + 146333076 146333366 L1PREC2 3366 + 2507 2792 121721 165 0 1 22 2 0 22 2 0 35 2 0 40 chain 82411 chr6 171115067 + 146382584 146383640 L1PA7 6471 + 5441 6468 42582 282 56 28 294 0 2 411 3 0 10 chain 107611 chr6 171115067 + 146404694 146406048 L1P3 4156 - 17 1365 34824 24 2 1 7 2 0 571 7 5 37 1 0 703 chain 119985 chr6 171115067 + 146429747 146431306 THE1B-int 1605 + 0 1597 31066 195 17 30 29 1 2 55 0 1 21 0 2 9 0 1 85 1 26 191 0 1 4 1 0 186 10 5 754 chain 319997 chr6 171115067 + 146439576 146443234 L1PA5 6144 - 1 3668 12597 94 4 0 163 0 1 736 0 1 807 0 4 575 0 1 564 1 2 128 0 1 234 0 4 352 chain 18747 chr6 171115067 + 146455526 146455784 THE1C 375 - 0 257 130832 26 1 0 135 4 8 6 4 0 82 chain 6238 chr6 171115067 + 146461308 146461389 L1MA3 4352 - 4178 4257 183263 19 1 0 19 1 0 41 chain 3048 chr6 171115067 + 146472140 146472176 L1M1 2793 + 1707 1743 224025 36 chain 9483 chr6 171115067 + 146476329 146476539 Tigger3a 397 + 15 266 163149 12 18 16 20 9 0 12 24 83 100 7 0 8 chain 44088 chr6 171115067 + 146542329 146542876 L1PA7 6471 - 5 544 64111 7 4 0 84 12 8 440 chain 71369 chr6 171115067 + 146564681 146565568 MER11B 1079 - 192 1072 47757 7 0 1 105 6 8 24 11 1 734 chain 49271 chr6 171115067 + 146581159 146581924 L1PA8 5853 - 0 835 59534 93 1 0 6 0 17 48 13 11 26 0 8 34 2 0 48 1 0 180 0 1 153 40 81 32 0 10 7 23 19 25 16 19 17 chain 26829 chr6 171115067 + 146588540 146589084 MLT2A1 477 - 0 477 96880 20 1 0 19 1 43 127 4 3 44 146 26 22 7 11 21 0 1 60 0 8 72 chain 371281 chr6 171115067 + 146639150 146643715 L1PA7 6471 - 13 5695 11051 315 3 0 443 0 2 74 0 3 117 1 0 12 0 1 17 0 5 142 1 0 51 0 28 94 6 4 60 0 1 267 0 4 575 0 1 177 2 1 228 3 0 313 23 20 404 0 4 232 0 1 93 0 4 278 2 1048 53 0 24 8 4 5 275 1 2 34 1 6 256 chain 128774 chr6 171115067 + 146643740 146645207 L1PA4 6152 - 1 1480 28370 145 1 0 113 3 4 179 0 1 132 1 13 270 1 0 622 chain 85809 chr6 171115067 + 146713671 146714729 L1PA7 6471 - 2 1064 41225 10 3 0 327 1 0 62 0 1 47 4 6 316 0 2 78 1 0 16 1 5 192 chain 53107 chr6 171115067 + 146714729 146715346 L1PA7 6471 + 4785 5406 56839 19 0 2 298 1 2 46 0 1 253 chain 25637 chr6 171115067 + 146770505 146770863 THE1B 368 - 0 360 101554 18 3 0 5 6 9 163 2 1 130 0 5 23 2 0 6 chain 29238 chr6 171115067 + 146771604 146772037 LTR7Y 441 - 0 441 87858 126 0 1 70 68 84 57 9 0 103 chain 253391 chr6 171115067 + 146773746 146777171 HERVH-int 3825 - 705 3825 16061 39 24 26 374 1 0 656 0 10 299 4 31 903 0 3 14 0 2 7 0 1 26 4 3 6 0 1 20 2 1 42 1 0 6 22 19 12 1 0 15 28 0 24 1 0 9 308 0 1 1 0 36 5 0 534 chain 10002 chr6 171115067 + 146776288 146776594 HERVH-int 3825 - 3255 3373 158150 38 5 0 60 183 0 20 chain 4953 chr6 171115067 + 146776392 146776445 HERVH-int 3825 - 3293 3346 195675 53 chain 5148 chr6 171115067 + 146776452 146776509 HERVH-int 3825 - 3292 3349 193571 57 chain 29791 chr6 171115067 + 146777171 146777605 LTR7Y 441 - 0 441 85495 197 68 84 57 9 0 103 chain 6513 chr6 171115067 + 146796032 146796274 L1M3c 1411 - 237 467 181134 14 73 60 4 0 1 4 1 0 6 1 0 9 0 3 57 48 47 25 chain 22402 chr6 171115067 + 146800599 146800977 THE1B 368 + 0 368 118475 64 3 35 7 32 0 66 2 1 29 13 11 36 7 0 119 chain 6730 chr6 171115067 + 146801610 146801689 L1PREC2 3366 + 2251 2330 179469 79 chain 36525 chr6 171115067 + 146821359 146821779 LTR3 431 + 0 421 74206 258 0 1 162 chain 21696 chr6 171115067 + 146822106 146822349 L1PA3long 6157 - 0 243 121406 243 chain 517952 chr6 171115067 + 146830620 146836956 L1PA6 6164 - 2 6164 5382 146 0 1 507 0 3 12 1 0 165 0 5 7 0 1 123 0 1 194 0 1 558 187 1 874 1 0 319 0 4 50 0 1 510 1 0 4 0 1 276 0 1 71 0 1 54 7 4 417 0 1 1164 4 0 118 1 0 102 4 5 173 4 5 282 chain 11920 chr6 171115067 + 146832369 146832507 L1PA6 6164 - 2316 2454 152512 138 chain 200064 chr6 171115067 + 146840921 146843159 L1PA5 6144 - 0 2237 19208 332 2 1 1904 chain 107613 chr6 171115067 + 146843159 146844319 L1HS 6032 + 4737 5897 34723 1160 chain 35365 chr6 171115067 + 146846746 146847212 LOR1a 498 + 0 474 75710 129 0 1 101 10 14 179 0 3 47 chain 17063 chr6 171115067 + 146849861 146850157 THE1B 368 - 61 368 135420 65 1 0 10 1 0 19 1 5 7 0 3 14 1 0 4 1 2 9 1 0 83 32 39 47 chain 41171 chr6 171115067 + 146860528 146861068 MLT2A2 560 - 0 560 67679 143 0 11 188 16 26 13 1 0 179 chain 6143 chr6 171115067 + 146874201 146874280 L1PA2 6032 - 0 78 184045 20 1 0 58 chain 179336 chr6 171115067 + 146877128 146879121 L1PA3long 6157 - 15 2031 21048 309 2 26 628 1 0 1053 chain 82189 chr6 171115067 + 146882611 146883525 L1P1 4361 + 1349 2269 42682 67 0 5 410 0 1 437 chain 3463 chr6 171115067 + 146887490 146887534 MLT1C 463 + 0 45 215937 30 0 1 14 chain 6989 chr6 171115067 + 146887940 146888020 L1PA5 6144 - 673 753 177542 80 chain 58087 chr6 171115067 + 146888020 146888685 L1PA5 6144 + 5472 6138 53933 338 1 2 326 chain 3352 chr6 171115067 + 146889286 146889354 MSTD 398 + 69 159 218009 39 16 38 13 chain 33964 chr6 171115067 + 146889878 146890312 L1PA7 6471 + 6036 6470 77670 201 7 8 57 0 1 17 2 3 142 3 0 5 chain 14791 chr6 171115067 + 146899824 146899991 L1PA4 6152 + 5731 5897 141962 87 1 0 79 chain 77113 chr6 171115067 + 146900749 146901673 L1PA7 6471 - 13 964 44911 136 0 1 22 1 2 160 0 1 139 0 24 275 0 1 76 1 0 114 chain 25318 chr6 171115067 + 146901683 146902016 L1P1 4361 + 3019 3350 103130 216 9 7 108 chain 10778 chr6 171115067 + 146905760 146905888 MER49 923 + 189 317 157083 128 chain 2636 chr6 171115067 + 146959336 146959457 MER75B 242 - 0 125 145455 13 0 4 108 chain 38148 chr6 171115067 + 146959466 146959892 L1PA4 6152 + 5717 6143 71913 426 chain 1459 chr6 171115067 + 146959900 146959967 MER75B 242 - 125 192 145455 67 chain 26354 chr6 171115067 + 146960471 146960828 L1PREC2 3366 + 2029 2390 98598 25 0 1 69 6 7 81 1 3 175 chain 4825 chr6 171115067 + 146960845 146960945 U6 107 + 13 93 197070 5 3 0 53 26 9 13 chain 147479 chr6 171115067 + 146960982 146963133 L1PA14 3548 + 1356 3485 24966 132 0 1 21 1 5 284 1 0 554 1 0 131 0 1 52 1 0 129 0 1 19 5 4 37 16 13 11 0 2 10 0 14 55 1 0 4 0 1 101 3 1 14 2 0 17 15 14 16 9 5 14 5 0 81 23 19 12 2 0 6 1 0 84 13 12 99 1 0 9 4 0 38 4 2 12 1 0 21 1 0 41 6 0 10 1 0 20 chain 10737 chr6 171115067 + 146975069 146975195 MER85 139 + 2 138 157254 87 0 10 39 chain 10915 chr6 171115067 + 146993695 146993828 MER41D 557 - 20 153 156540 133 chain 14266 chr6 171115067 + 147002259 147002629 MSTA 426 + 26 426 143664 56 26 50 19 15 19 25 88 85 18 17 22 106 chain 28029 chr6 171115067 + 147008530 147008889 L1PA8A 6298 + 5931 6290 92900 4 1 0 244 6 7 104 chain 29564 chr6 171115067 + 147037445 147037764 AluYb8 318 + 0 317 86361 132 2 0 185 chain 39357 chr6 171115067 + 147113996 147114496 LTR12F 595 - 0 595 70240 376 0 9 16 8 94 100 chain 104370 chr6 171115067 + 147117033 147118639 L1PB2 3958 + 2267 3838 35647 12 9 11 111 19 0 8 0 19 57 0 1 4 0 2 262 24 0 27 0 3 95 0 1 75 7 8 178 0 13 52 14 20 76 7 5 56 1 0 17 8 1 37 0 1 20 2 0 12 4 0 84 6 5 21 6 0 9 1 7 40 1 0 64 1 0 67 3 1 25 2 1 11 38 19 33 chain 44722 chr6 171115067 + 147175931 147176482 MLT2A2 560 + 0 560 63358 14 1 0 169 1 0 219 0 11 147 chain 28485 chr6 171115067 + 147177862 147178201 L1PA6 6164 + 5821 6160 91240 339 chain 2745 chr6 171115067 + 147201286 147201321 PABL_A 660 + 216 252 229556 10 0 1 25 chain 3080 chr6 171115067 + 147246697 147246731 MER57A1 433 + 0 34 223343 34 chain 51374 chr6 171115067 + 147246778 147247632 MER57-int 2662 + 1845 2660 58046 64 3 0 38 2 3 370 16 12 72 1 6 14 19 13 35 4 0 29 77 58 23 1 0 10 5 0 33 3 0 35 chain 274830 chr6 171115067 + 147260117 147263505 L1PA7 6471 - 5 3440 14933 7 2 0 317 1 0 13 8 16 396 1 4 85 1 5 40 0 33 263 0 1 133 0 1 288 17 11 274 0 1 4 1 0 97 0 1 218 0 1 158 0 1 233 5 4 202 0 3 50 1 0 55 1 5 12 2 0 42 1 0 6 2 3 452 chain 68417 chr6 171115067 + 147309023 147309811 L1PA6 6164 + 5127 5920 49081 77 0 1 159 1 4 97 1 2 453 chain 5737 chr6 171115067 + 147312055 147312119 LTR12C 1709 + 1293 1357 187768 64 chain 25187 chr6 171115067 + 147319402 147319667 AluYb9 318 + 27 293 103818 181 0 1 84 chain 15324 chr6 171115067 + 147352420 147352606 L1PA7 6471 + 6273 6467 140413 145 0 1 33 0 7 8 chain 42911 chr6 171115067 + 147355601 147356142 MER41A 554 + 0 546 65526 469 1 6 71 chain 13459 chr6 171115067 + 147392148 147392310 THE1C 375 - 213 375 146491 162 chain 42509 chr6 171115067 + 147503978 147504447 L1PA3long 6157 - 1 470 66003 469 chain 15778 chr6 171115067 + 147520370 147520592 AluSp 311 + 76 295 139023 35 20 17 167 chain 347107 chr6 171115067 + 147572141 147576513 L1PA7 6471 + 15 6381 11690 165 0 1 7 13 13 141 3 0 69 0 1 117 0 201 322 4 11 14 1 0 125 0 8 168 0 1 345 0 4 282 0 1770 187 1 0 243 0 2 105 1 4 205 0 4 128 0 5 6 1 3 157 0 1 154 0 3 85 6 4 75 0 1 462 0 3 31 36 9 454 0 1 157 40 50 62 chain 29390 chr6 171115067 + 147608330 147608637 AluYa5 310 - 3 310 87120 307 chain 15978 chr6 171115067 + 147656781 147656958 AluYf4 310 + 127 304 138419 177 chain 37192 chr6 171115067 + 147680600 147681020 L1PA3long 6157 - 0 422 73243 5 0 2 415 chain 47337 chr6 171115067 + 147681020 147681541 L1PA3long 6157 + 5234 5755 60944 521 chain 4236 chr6 171115067 + 147683227 147683281 MER53 195 - 98 153 204085 24 0 1 30 chain 54328 chr6 171115067 + 147740606 147741611 L1PA8 5853 + 5144 5852 56145 47 2 1 44 3 0 284 0 8 36 1 0 46 2 0 66 4 3 15 3 1 45 2 1 19 294 0 92 chain 119510 chr6 171115067 + 147746035 147747569 L1PA8 5853 - 0 1509 31213 93 1 0 19 10 1 47 1 0 13 4 3 11 0 1 56 2 0 45 1 0 140 28 0 341 0 1 71 0 2 155 7 8 186 2 15 52 1 0 128 0 1 120 chain 5966 chr6 171115067 + 147752501 147752691 MER5A 189 - 0 189 185540 59 102 101 29 chain 24251 chr6 171115067 + 147761040 147761381 THE1C 375 - 30 375 108942 128 27 28 8 2 0 21 0 1 13 0 4 142 chain 44104 chr6 171115067 + 147770408 147770952 MER41A 554 - 7 554 64081 119 0 1 334 0 1 20 0 1 71 chain 38679 chr6 171115067 + 147774054 147774535 LTR2 463 - 0 463 71177 181 17 0 48 1 0 234 chain 164821 chr6 171115067 + 147781370 147783435 L1PA7 6471 + 4411 6453 22672 92 1 9 466 16 0 441 0 1 201 1 0 46 0 1 456 25 7 166 17 0 8 0 18 37 4 5 88 chain 25503 chr6 171115067 + 147791899 147792203 AluY 311 + 0 297 102205 126 6 0 147 4 3 21 chain 29126 chr6 171115067 + 147793856 147794266 L1PBa 3878 - 2135 2560 86407 98 23 24 116 0 14 15 0 1 27 2 1 129 chain 97324 chr6 171115067 + 147794266 147795723 L1PB2 3958 + 2410 3836 37477 35 6 7 25 7 0 4 1 0 164 1 2 4 1 0 129 4 3 141 1 0 250 5 6 4 1 0 123 2 0 53 41 29 50 26 20 67 0 1 18 1 0 72 1 0 60 13 12 39 0 3 15 3 1 28 1 0 61 chain 133338 chr6 171115067 + 147801412 147802995 L1PA7 6471 - 1 1596 27363 35 0 9 289 1 0 422 0 3 10 0 2 81 1 0 744 chain 154383 chr6 171115067 + 147803462 147805202 L1PA5 6144 - 0 1740 24060 1740 chain 3755 chr6 171115067 + 147808852 147808896 MER58D 378 + 321 365 211075 44 chain 13985 chr6 171115067 + 147816544 147816884 MLT1A 405 - 39 405 144629 71 24 29 47 91 112 27 13 14 43 1 0 23 chain 8097 chr6 171115067 + 147837856 147837956 ERVL-B4-int 2334 - 2067 2167 170508 100 chain 5647 chr6 171115067 + 147840743 147840931 MER97d 503 - 253 439 188595 27 44 38 15 33 32 43 9 14 17 chain 14513 chr6 171115067 + 147848710 147848899 MSTA-int 1630 - 4 198 142846 13 1 0 88 5 11 82 chain 19766 chr6 171115067 + 147853644 147853930 L1PB2 3958 - 120 402 127919 26 8 9 28 2 1 21 2 0 72 1 0 64 1 0 61 chain 12945 chr6 171115067 + 147862421 147862838 HUERS-P1-int 2401 - 1871 2196 148450 26 18 0 15 0 1 5 5 2 8 1 0 38 1 0 5 21 18 27 1 0 13 1 0 7 104 52 14 11 8 14 4 0 34 6 1 11 1 0 26 chain 51569 chr6 171115067 + 147928320 147929116 L1MA1 4479 + 3378 4190 57909 11 4 0 162 5 8 103 1 0 49 4 3 25 2 0 14 1 0 12 0 39 22 1 0 19 2 0 14 1 0 88 1 0 5 3 0 46 6 16 64 1 0 14 3 0 15 2 0 35 1 0 9 10 5 16 12 5 13 chain 15922 chr6 171115067 + 147945580 147945822 L1PB1 5432 - 177 407 138602 18 1 0 15 3 2 52 2 0 9 6 2 11 1 0 8 1 0 24 1 0 11 1 0 78 chain 25093 chr6 171115067 + 147951074 147951376 AluSp 311 - 1 303 104334 302 chain 10379 chr6 171115067 + 147951918 147952156 HERVH-int 3825 + 221 576 158790 101 60 59 29 11 10 15 1 121 14 1 0 6 chain 10694 chr6 171115067 + 147953584 147953702 HERVH-int 3825 - 264 382 157437 118 chain 3129 chr6 171115067 + 147967911 147967990 Tigger2 2703 - 143 229 222388 8 0 2 14 28 33 29 chain 33821 chr6 171115067 + 147989997 147990506 Tigger1 2417 - 120 632 77907 41 1 0 22 0 1 13 5 6 67 0 1 169 49 50 142 chain 5043 chr6 171115067 + 148000951 148001167 L1ME1 1623 - 966 1184 194699 44 130 133 14 2 1 26 chain 10126 chr6 171115067 + 148018252 148018401 LOR1b 457 - 0 146 159961 68 8 5 73 chain 24236 chr6 171115067 + 148041332 148041611 AluY 311 + 17 295 109015 101 2 0 14 0 1 162 chain 95020 chr6 171115067 + 148041834 148042880 L1PA3long 6157 - 0 1044 38091 5 2 0 1039 chain 4023 chr6 171115067 + 148065313 148065364 MIR 256 + 59 109 207035 6 1 0 44 chain 65889 chr6 171115067 + 148075515 148076490 L1MA1 4479 - 289 1228 50146 18 7 0 9 3 1 11 1 0 9 1 0 35 2 0 29 13 12 114 3 0 5 1 0 102 2 0 19 1 0 63 27 24 16 9 8 202 2 0 7 0 2 116 2 0 73 5 0 52 4 0 12 chain 501693 chr6 171115067 + 148116203 148121758 L1PA3long 6157 - 0 5684 6744 2794 0 1 2458 8 136 295 chain 6543 chr6 171115067 + 148144681 148144761 L1PA8 5853 + 5773 5853 180899 80 chain 16016 chr6 171115067 + 148157509 148157784 MER47A 366 - 1 297 138317 16 37 53 178 1 0 4 0 1 16 7 12 16 chain 3101 chr6 171115067 + 148225517 148225568 MLT1J1 437 + 243 293 222917 29 7 6 15 chain 25564 chr6 171115067 + 148226027 148226323 AluSp 311 - 15 311 101910 296 chain 3530 chr6 171115067 + 148230916 148230960 MER58B 340 + 288 332 214884 44 chain 70705 chr6 171115067 + 148236898 148237690 L1PA5 6144 - 9 800 48065 250 1 0 541 chain 162243 chr6 171115067 + 148237694 148239531 L1PA3long 6157 - 0 1832 23028 1522 1 0 50 4 0 260 chain 25597 chr6 171115067 + 148239531 148239821 L1PA3long 6157 + 4044 4334 100599 290 chain 42875 chr6 171115067 + 148241187 148241732 MLT2A2 560 + 0 560 65565 399 3 14 113 0 4 30 chain 24432 chr6 171115067 + 148265361 148265706 THE1B 368 - 0 368 107905 29 0 4 48 0 6 33 0 1 49 2 0 24 3 2 101 12 27 44 chain 173634 chr6 171115067 + 148276651 148278546 L1PA3long 6157 - 2 1897 21632 1895 chain 48246 chr6 171115067 + 148286507 148287085 L1PA7 6471 + 5894 6468 60277 429 4 6 132 6 0 7 chain 64243 chr6 171115067 + 148290094 148290884 L1PA7 6471 - 5 810 50900 137 4 6 166 5 6 203 0 9 155 0 1 43 0 2 77 chain 25938 chr6 171115067 + 148300655 148301009 THE1A 353 + 0 353 100259 15 16 14 18 0 1 46 1 0 129 0 1 129 chain 3735 chr6 171115067 + 148303657 148303698 MADE1 96 + 53 94 211384 41 chain 83361 chr6 171115067 + 148311569 148312641 L1PA8 5853 + 4785 5853 42173 157 0 1 62 1 4 305 1 0 248 1 0 44 4 2 70 2 1 9 11 10 41 3 2 19 2 1 92 chain 20174 chr6 171115067 + 148330979 148331338 THE1D 372 + 0 365 126605 122 96 102 141 chain 81624 chr6 171115067 + 148331370 148332560 THE1D-int 1627 + 23 1627 42917 15 1 0 209 3 481 30 12 2 8 0 3 6 1 7 23 4 5 4 1 0 335 30 30 132 62 0 149 1 0 132 0 1 32 chain 37169 chr6 171115067 + 148376159 148376628 MER11B 1079 - 619 1079 73281 97 0 5 281 15 1 76 chain 328838 chr6 171115067 + 148378231 148385352 L1PA11 4918 - 289 4912 12243 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 24 19 13 27 18 29 2 0 67 1 2 10 2 1 63 1 0 5 2 0 142 0 5 20 1 0 4 0 1 166 0 1 17 5 16 184 2 14 326 3 5 24 0 4 132 0 2 98 0 9 85 0 1 350 0 3 179 8 0 4 2165 0 241 0 5 69 8 7 185 324 0 214 4 1 325 3 1 78 2 1 179 0 1 191 2 1 274 0 4 77 0 13 142 5 3 48 0 1 4 3 2 189 20 3 57 6 4 4 1 0 19 0 1 11 6 5 47 3 1 12 1 0 30 11 7 35 3 1 36 chain 120621 chr6 171115067 + 148392264 148393942 L1PA8 5853 - 0 1601 30834 93 1 0 19 2 1 38 16 14 7 1 0 15 51 29 27 2 0 46 1 0 51 37 0 25 1 0 194 0 1 286 2 0 276 0 1 6 1 0 156 4 5 142 9 0 169 chain 22562 chr6 171115067 + 148394468 148394738 AluY 311 + 30 303 117750 102 0 1 130 0 2 38 chain 60933 chr6 171115067 + 148420986 148421834 Tigger1 2417 + 983 1830 52374 299 4 5 12 8 0 9 15 16 163 5 6 180 0 1 121 7 10 25 chain 27844 chr6 171115067 + 148439989 148440280 AluYb8 318 - 12 303 93547 291 chain 343497 chr6 171115067 + 148480551 148484322 L1PA3long 6157 - 0 3787 11797 67 5 20 1883 0 1 1009 1 0 788 0 1 18 chain 33385 chr6 171115067 + 148484322 148484700 L1HS 6032 + 1849 2227 78453 378 chain 15948 chr6 171115067 + 148484710 148484935 THE1C 375 - 149 375 138525 27 12 14 5 1 0 180 chain 41386 chr6 171115067 + 148491848 148492420 L1PA8 5853 - 0 564 67425 66 4 1 26 1 0 17 6 5 31 0 1 11 14 13 43 0 1 28 2 0 17 1 0 29 1 0 275 chain 135868 chr6 171115067 + 148499304 148500884 SVA_D 2077 - 18 2071 26867 332 0 3 279 1 0 12 0 176 72 1 1 118 0 51 29 0 83 138 0 40 155 0 76 268 0 1 48 1 18 28 0 27 43 0 2 44 2 0 9 chain 26077 chr6 171115067 + 148572825 148573109 L1PA3long 6157 - 4 289 99718 108 0 1 176 chain 5530 chr6 171115067 + 148598108 148598174 MIR 256 - 26 92 189750 66 chain 22514 chr6 171115067 + 148611755 148612018 SVA_B 1603 + 1340 1598 117968 116 8 1 40 0 2 99 chain 13900 chr6 171115067 + 148646710 148646888 THE1C 375 - 193 375 144920 42 1 5 135 chain 27290 chr6 171115067 + 148655277 148655584 AluY 311 + 0 303 95302 12 1 0 114 3 0 177 chain 22129 chr6 171115067 + 148684580 148684835 AluSg7 307 - 52 307 119668 255 chain 9314 chr6 171115067 + 148733841 148733955 MSTB 430 - 316 430 163995 114 chain 25209 chr6 171115067 + 148770525 148770818 AluSp 311 - 14 307 103687 293 chain 19012 chr6 171115067 + 148778840 148779092 THE1C 375 - 27 278 130084 149 6 0 5 0 1 11 3 7 78 chain 151548 chr6 171115067 + 148875349 148877006 L1PA3long 6157 + 4497 6157 24392 520 1 0 290 0 1 78 0 2 221 0 1 547 chain 4710 chr6 171115067 + 148882046 148882101 MER1A 529 + 0 55 198393 55 chain 22364 chr6 171115067 + 148901073 148901335 AluY 311 + 39 300 118652 84 2 0 9 0 1 167 chain 342496 chr6 171115067 + 148903393 148908243 L1PA11 4918 - 410 4918 11820 20 3 2 12 2 0 67 2 0 7 2 7 37 0 9 12 9 4 164 0 1 15 0 1 101 317 0 231 20 4 186 0 1 141 0 3 8 4 2 349 1 0 382 6 7 19 22 11 39 0 4 34 1 0 53 13 20 62 2 1 181 0 1 16 0 5 25 0 4 101 0 1 345 4 1 388 0 4 11 2 1 26 2 1 1094 0 1 67 2 1 5 2 0 35 1 0 48 2 0 15 9 8 29 3 0 36 2 0 29 14 0 13 chain 11443 chr6 171115067 + 148912691 148912850 MER2 342 + 180 341 154523 114 10 12 35 chain 32630 chr6 171115067 + 148918325 148918756 MER57A1 433 - 0 433 79798 146 1 2 32 7 8 245 chain 26836 chr6 171115067 + 148922458 148922773 L1PA7 6471 + 6157 6468 96849 17 0 1 286 5 0 7 chain 43300 chr6 171115067 + 148922821 148923335 MER9a2 513 + 0 513 65050 175 0 1 280 2 0 57 chain 2845 chr6 171115067 + 148927565 148927643 MADE1 96 - 3 96 227938 18 6 5 22 17 33 15 chain 26801 chr6 171115067 + 148947766 148948079 AluY 311 + 0 310 96980 127 6 0 7 0 1 140 0 2 33 chain 20407 chr6 171115067 + 148960907 148961315 LTR7 482 + 0 482 125869 69 29 17 15 15 14 17 49 132 21 1 0 80 1 2 15 0 2 35 12 14 49 chain 288211 chr6 171115067 + 148961317 148964974 HERVH-int 3825 + 0 3825 14152 212 0 11 307 1 0 11 1 0 4 0 1 9 0 3 12 2 1 9 1 0 7 31 21 11 17 32 5 1 0 27 2 0 14 1 0 14 65 0 45 0 1 6 0 2 14 0 3 416 15 4 24 15 0 344 0 5 110 4 31 90 5 0 155 5 0 40 1 5 291 0 1 772 9 11 39 12 222 250 6 8 225 chain 23823 chr6 171115067 + 148966234 148966635 LTR7 482 + 0 473 111341 69 6 95 21 51 0 39 8 40 155 12 14 40 chain 38366 chr6 171115067 + 148967032 148967607 HSMAR1 1287 + 14 1286 71625 130 13 24 28 59 741 84 0 4 261 chain 21931 chr6 171115067 + 148971808 148972093 MER4E 760 - 0 286 120497 24 0 2 168 2 0 27 8 9 56 chain 97145 chr6 171115067 + 148974971 148978065 MER57-int 2662 + 54 2659 37528 16 53 38 18 1 9 52 0 2 124 2 0 106 39 0 39 1 5 308 1530 1122 15 3 0 7 4 3 401 20 16 88 1 0 10 11 6 65 28 15 19 6 5 5 1 0 10 4 1 23 0 1 9 5 0 33 3 0 34 chain 87383 chr6 171115067 + 148986848 148987930 MER11A 1151 + 10 1151 40620 69 0 8 109 0 4 27 0 4 63 0 11 379 0 1 176 5 2 15 1 36 72 1 0 99 1 0 31 0 1 34 chain 303555 chr6 171115067 + 148988936 148992976 L1PA7 6471 - 5 6466 13266 97 0 8 37 28 30 213 0 8 454 1 0 670 7 4 46 0 2 5 2 0 253 1 0 14 1 0 264 7 46 39 0 2 88 0 1 459 0 2149 293 21 27 7 6 0 153 0 13 181 14 14 40 0 14 53 2 1 17 0 15 50 1 2 15 58 58 114 21 191 106 18 17 15 1 2 35 1 0 34 9 16 89 chain 32436 chr6 171115067 + 148997478 148997934 MLT2A2 560 - 0 560 80139 42 9 5 7 0 1 6 1 0 86 3 112 118 1 0 183 chain 19697 chr6 171115067 + 149000167 149000467 THE1B 368 + 0 304 128113 169 1 0 11 13 15 4 0 1 9 1 5 10 18 16 64 chain 37530 chr6 171115067 + 149009982 149010497 MLT2A2 560 + 0 560 72775 180 1 0 122 10 44 53 3 14 92 0 1 54 chain 122350 chr6 171115067 + 149017429 149019743 LTR12C 1709 - 0 1709 30267 77 13 12 392 9 4 14 27 2 90 9 6 78 0 2 93 643 0 30 6 115 91 41 0 227 11 12 44 5 6 414 chain 6109 chr6 171115067 + 149018242 149018315 LTR12C 1709 - 1059 1132 184352 73 chain 43340 chr6 171115067 + 149018315 149018865 LTR12C 1709 - 0 553 54344 82 1 0 68 1 0 87 0 1 243 0 4 68 chain 3231 chr6 171115067 + 149019001 149019042 LTR12C 1709 - 687 728 54344 41 chain 46501 chr6 171115067 + 149027924 149028487 MLT2A2 560 - 0 560 61595 291 3 0 269 chain 25265 chr6 171115067 + 149048673 149048967 AluSp 311 + 11 305 103390 294 chain 25502 chr6 171115067 + 149052485 149052861 THE1B 368 + 0 368 102218 13 2 0 27 0 5 127 4 1 21 8 5 75 4 0 13 7 6 75 chain 29266 chr6 171115067 + 149054662 149055020 THE1B 368 - 11 368 87714 108 1 0 6 0 1 70 1 0 172 chain 16359 chr6 171115067 + 149063515 149063946 L1MA8 2339 - 77 499 137313 6 1 0 19 12 10 12 67 61 32 68 42 71 1 0 17 6 9 5 3 0 22 1 3 15 0 25 73 chain 12018 chr6 171115067 + 149075458 149075718 L1PB1 5432 - 5 239 152126 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 16 37 32 25 14 1 16 1 0 44 1 0 15 2 1 27 chain 3954 chr6 171115067 + 149076638 149076777 THE1C 375 + 23 165 98784 91 1 0 28 0 4 19 chain 31654 chr6 171115067 + 149076998 149077342 L1PA5 6144 - 4 348 81398 344 chain 5916 chr6 171115067 + 149077355 149077563 THE1C 375 + 165 375 98784 20 0 2 188 chain 23480 chr6 171115067 + 149080393 149080657 AluY 311 + 14 277 113214 109 1 0 154 chain 25369 chr6 171115067 + 149080709 149081007 AluY 311 + 7 306 102831 125 0 1 173 chain 3384 chr6 171115067 + 149090630 149090669 MIRc 230 + 67 106 217385 39 chain 73148 chr6 171115067 + 149108015 149108960 L1PA11 4918 - 410 1370 46948 19 1 0 17 2 0 78 2 1 44 3 4 20 1 0 11 0 4 76 15 16 72 0 15 471 1 0 112 chain 23646 chr6 171115067 + 149138466 149138806 MER4E 760 - 0 339 112328 149 0 1 29 0 1 41 10 6 4 1 0 23 0 2 9 0 1 50 7 6 17 chain 36290 chr6 171115067 + 149145814 149146202 L1HS 6032 - 0 388 74514 388 chain 72904 chr6 171115067 + 149166951 149167743 L1PA3long 6157 + 5365 6157 47068 792 chain 534488 chr6 171115067 + 149179635 149185766 L1PA5 6144 - 0 6144 3652 333 1 0 345 0 7 165 1 0 672 1 0 1208 1 0 724 0 1 969 0 1 548 9 0 107 0 1 183 0 1 735 1 15 68 7 8 53 chain 22127 chr6 171115067 + 149221440 149221781 THE1B 368 + 1 356 119675 138 0 4 26 2 1 28 45 55 17 0 1 85 chain 9431 chr6 171115067 + 149268320 149268444 MER85 139 - 1 134 163401 28 2 1 9 0 10 85 chain 41477 chr6 171115067 + 149299406 149299974 L1PA8 5853 + 5320 5853 67314 49 36 8 187 1 0 45 2 0 73 1 0 6 1 0 52 2 1 19 2 1 92 chain 20618 chr6 171115067 + 149312498 149312728 L1PA5 6144 - 0 230 125231 230 chain 3113 chr6 171115067 + 149332666 149332702 LOR1-int 1871 - 1395 1431 222692 36 chain 23733 chr6 171115067 + 149399966 149400342 THE1C 375 + 0 375 111869 64 24 27 32 3 0 19 0 4 39 25 23 141 3 0 26 chain 40303 chr6 171115067 + 149422551 149422995 L1PA2 6032 - 7 451 68875 444 chain 13552 chr6 171115067 + 149425831 149426028 L1PB4 2604 + 2389 2570 146158 49 15 0 114 1 0 18 chain 21761 chr6 171115067 + 149436759 149437022 AluSc 308 + 37 300 121170 263 chain 31540 chr6 171115067 + 149450141 149450680 MLT2A1 477 - 0 477 81584 33 132 59 64 0 4 144 0 4 27 1 2 52 0 2 86 chain 12869 chr6 171115067 + 149464186 149464559 MER57D 437 - 0 437 148761 132 85 111 28 102 140 26 chain 107454 chr6 171115067 + 149466792 149468189 L1PA7 6471 - 3 1351 34848 11 5 1 147 1 2 493 0 10 141 2 0 42 2 1 136 0 3 129 25 0 6 29 0 4 2 0 222 chain 34417 chr6 171115067 + 149497113 149497544 MLT2A1 477 - 0 477 77035 33 0 43 192 2 7 22 0 1 8 3 0 171 chain 28358 chr6 171115067 + 149498885 149499182 AluYa5 310 - 13 310 91737 297 chain 89638 chr6 171115067 + 149505476 149506852 L1PB1 5432 - 10 1375 39768 18 1 0 12 1 0 19 1 0 27 2 0 14 1 0 5 3 1 15 30 19 12 6 5 39 1 0 15 2 1 22 0 1 13 33 28 10 1 0 12 1 0 16 17 15 136 0 13 222 3 12 97 3 0 176 2 8 9 6 0 373 chain 25799 chr6 171115067 + 149525664 149526062 MSTA 426 - 0 426 100871 27 0 4 154 41 38 44 0 6 20 1 0 4 7 29 100 chain 19549 chr6 171115067 + 149597974 149598348 THE1B 368 + 0 368 128518 108 107 102 22 1 0 74 1 0 4 1 2 56 chain 34170 chr6 171115067 + 149610822 149611391 MER4B 649 - 30 617 77391 56 1 0 110 70 35 15 12 38 43 4 5 101 2 0 23 3 1 28 0 31 101 chain 25139 chr6 171115067 + 149698206 149698478 AluYc3 301 - 13 285 104079 272 chain 23302 chr6 171115067 + 149769145 149769432 AluY 311 + 0 287 114186 56 0 2 73 1 2 81 3 0 73 chain 43316 chr6 171115067 + 149783665 149784203 MLT2A2 560 + 9 559 65022 387 6 17 119 0 1 26 chain 21148 chr6 171115067 + 149801622 149801900 AluSp 311 + 4 305 123377 40 9 37 218 5 0 6 chain 23400 chr6 171115067 + 149827340 149827620 AluSp 311 + 8 294 113642 100 0 6 180 chain 5105 chr6 171115067 + 149838092 149838152 U7 62 + 1 61 194029 60 chain 25046 chr6 171115067 + 149843760 149844046 AluSc 308 - 22 308 104563 286 chain 24049 chr6 171115067 + 149858857 149860982 Tigger1 2417 + 1170 2231 110051 124 1 2 6 33 0 60 3 0 12 1719 690 167 chain 29657 chr6 171115067 + 149872279 149872642 L1PBa 3878 - 2385 2754 86037 53 5 10 110 0 1 195 chain 136303 chr6 171115067 + 149875189 149878222 L1PB1 5432 + 3325 5426 26782 154 1 5 74 0 1 160 1 0 220 1 2 91 306 16 110 4 11 50 15 20 386 1 0 78 0 2 99 0 2 8 17 20 108 38 37 124 625 2 9 5 0 24 51 43 38 1 0 18 1 0 20 6 0 23 1 0 16 3 0 8 17 9 11 51 46 22 1 0 12 1 0 15 1 0 7 chain 19427 chr6 171115067 + 149883453 149883717 AluSp 311 - 12 278 128878 171 11 10 16 9 12 57 chain 4800 chr6 171115067 + 149906114 149906176 Tigger4b 360 - 283 353 197363 53 0 8 9 chain 27838 chr6 171115067 + 149947428 149947717 AluYd8 298 - 9 298 93569 289 chain 8948 chr6 171115067 + 149952572 149952683 HY1 111 + 0 111 165879 77 0 1 4 1 0 29 chain 28903 chr6 171115067 + 149975898 149976236 L1PA7 6471 + 6128 6467 89443 323 0 1 15 chain 3243 chr6 171115067 + 149987317 149987354 L1MEf 1413 + 178 215 220139 37 chain 24197 chr6 171115067 + 150025144 150025427 AluSp 311 - 17 300 109232 283 chain 21869 chr6 171115067 + 150031109 150031449 MER4D1 891 + 541 881 120756 54 7 9 59 19 19 122 1 0 14 11 10 53 chain 23298 chr6 171115067 + 150033357 150033632 AluSp 311 - 34 311 114212 12 0 2 109 1 0 94 0 1 59 chain 9777 chr6 171115067 + 150033659 150033786 AluJr 308 - 184 308 161711 6 2 0 8 1 0 110 chain 22480 chr6 171115067 + 150064453 150064747 AluSp 311 + 0 296 118108 72 4 8 173 5 3 40 chain 21702 chr6 171115067 + 150085894 150086153 AluY 311 + 0 259 121375 17 2 1 114 0 1 126 chain 41147 chr6 171115067 + 150100092 150100626 HERV1_LTRb 511 + 0 511 67724 83 0 2 5 20 3 269 8 0 149 chain 160035 chr6 171115067 + 150106544 150108468 SVA_D 2077 - 0 2069 23335 639 0 98 45 0 1 86 0 78 27 1 0 34 5 0 20 1 0 11 0 1 39 0 1 50 11 0 31 1 0 13 1 0 135 40 0 28 40 0 178 0 76 216 0 1 220 11 0 41 chain 5579 chr6 171115067 + 150163559 150163690 L1MA7 2200 - 95 208 189284 15 7 0 38 36 25 35 chain 20779 chr6 171115067 + 150172913 150173264 THE1D 372 - 0 354 124683 118 13 7 22 1 0 27 5 25 66 23 27 6 3 0 19 9 0 23 2 0 14 chain 17519 chr6 171115067 + 150178226 150179012 LTR8 732 + 9 732 134214 52 0 4 102 538 473 8 2 0 84 chain 40191 chr6 171115067 + 150179191 150179703 L1PA6 6164 - 2 519 69042 17 2 1 139 0 2 24 6 8 91 0 3 45 1 0 187 chain 28839 chr6 171115067 + 150199066 150199522 L1P4 1494 + 80 537 89724 8 2 0 4 3 0 31 1 0 22 1 0 192 36 41 84 17 20 55 chain 205902 chr6 171115067 + 150212869 150215394 L1PA6 6164 - 2 2568 18799 384 0 5 15 3 19 428 0 3 503 1 6 1037 0 12 154 chain 119823 chr6 171115067 + 150229152 150230718 THE1B-int 1605 + 17 1592 31113 411 15 41 18 11 18 180 30 5 650 1 0 6 1 3 243 chain 76893 chr6 171115067 + 150237926 150238867 LTR13_ 950 - 0 950 45031 112 18 24 174 0 2 129 0 1 508 chain 153556 chr6 171115067 + 150248406 150250243 L1PA6 6164 - 10 1877 24150 147 15 15 234 0 15 427 0 1 435 1 5 97 0 1 128 0 1 93 0 8 260 chain 49089 chr6 171115067 + 150252993 150253961 L1PA8 5853 + 5205 5853 59679 319 320 0 38 1 0 42 0 5 73 1 0 6 1 0 52 2 1 15 8 7 90 chain 8035 chr6 171115067 + 150312410 150312575 LTR19C 757 - 598 757 170838 18 0 1 31 4 1 11 1 0 3 2 0 4 1 0 25 20 17 6 0 4 25 1 0 13 chain 27824 chr6 171115067 + 150328505 150328819 L1PA5 6144 - 0 314 93609 314 chain 29747 chr6 171115067 + 150383956 150384273 AluYb8 318 + 0 317 85665 317 chain 4601 chr6 171115067 + 150401062 150401118 LTR67B 553 - 460 516 199616 56 chain 29745 chr6 171115067 + 150421819 150422211 MER48 407 + 0 407 85676 29 16 12 91 0 20 21 1 0 234 chain 23459 chr6 171115067 + 150425794 150426071 AluSp 311 - 24 301 113322 277 chain 10147 chr6 171115067 + 150428812 150429016 Tigger2a 444 - 83 296 159867 15 5 8 14 21 23 19 4 0 8 3 0 5 4 16 34 1 0 71 chain 10475 chr6 171115067 + 150436672 150436910 LTR12D 1347 - 596 748 158369 43 17 10 31 79 0 68 chain 2395 chr6 171115067 + 150436763 150436800 LTR12D 1347 - 871 908 190020 37 chain 15698 chr6 171115067 + 150445767 150446000 L1MA8 2339 - 2069 2313 139272 50 17 29 117 1 0 48 chain 14291 chr6 171115067 + 150446086 150446275 MSTA 426 + 0 194 143586 21 0 1 48 8 12 112 chain 17825 chr6 171115067 + 150515013 150515373 THE1B 368 + 0 368 133323 108 126 134 126 chain 23222 chr6 171115067 + 150620366 150620650 AluY 311 + 0 298 114582 47 4 18 233 chain 21919 chr6 171115067 + 150626386 150626646 AluY 311 + 38 299 120546 93 1 2 166 chain 53956 chr6 171115067 + 150632091 150632777 LTR12_ 688 - 0 688 56399 310 0 2 230 3 28 36 25 0 82 chain 27799 chr6 171115067 + 150633600 150634034 MER51B 395 + 0 381 93702 86 64 13 88 2 1 41 1 0 152 chain 38632 chr6 171115067 + 150640380 150641030 MER4A 717 - 3 717 71248 9 1 0 53 116 176 128 11 22 201 8 2 123 chain 12155 chr6 171115067 + 150647755 150647899 U4 144 - 0 144 151588 144 chain 4196 chr6 171115067 + 150680217 150680273 MLT1B 390 + 277 330 204597 48 3 0 5 chain 27076 chr6 171115067 + 150681220 150681588 L1PA8 5853 - 0 360 96019 93 2 1 18 2 1 50 1 0 11 2 1 70 2 0 46 1 0 7 1 0 62 chain 36234 chr6 171115067 + 150686644 150687110 LTR15 485 + 0 478 74580 6 0 1 32 0 1 109 0 2 124 0 4 158 1 0 5 2 0 13 1 8 15 chain 32531 chr6 171115067 + 150699317 150699679 L1PA3long 6157 - 0 372 79974 349 0 10 13 chain 35890 chr6 171115067 + 150699679 150700069 L1PA3long 6157 + 5399 5789 75023 390 chain 3886 chr6 171115067 + 150721794 150721930 MER5A1 166 + 0 135 209087 23 75 74 38 chain 25704 chr6 171115067 + 150734834 150735200 MER66A 478 - 0 375 101272 96 24 28 70 1 6 175 chain 33158 chr6 171115067 + 150735200 150735821 MLT2A1 477 + 0 477 78972 169 4 1 9 0 1 23 0 1 150 183 0 43 3 43 37 chain 112270 chr6 171115067 + 150758354 150759938 L1PB2 3958 + 2207 3838 33596 41 0 1 90 0 1 85 0 1 54 0 76 368 1 0 157 0 2 112 0 1 21 0 2 25 0 1 10 39 10 44 2 0 54 3 2 12 13 9 53 2 0 12 4 0 19 12 16 13 1 3 38 2 1 43 5 7 26 1 0 46 3 4 12 1 0 74 2 0 21 6 5 9 0 2 48 chain 18571 chr6 171115067 + 150771448 150771657 L1PA7 6471 + 6251 6460 131302 209 chain 51693 chr6 171115067 + 150781916 150782524 L1PA6 6164 - 2 613 57821 8 0 4 157 0 1 16 6 4 421 chain 99743 chr6 171115067 + 150782525 150783657 L1PA6 6164 + 4399 5528 36843 442 1 0 655 2 0 32 chain 208757 chr6 171115067 + 150795056 150797381 L1PA3long 6157 + 3844 6156 18585 263 0 1 1701 16 1 178 0 1 167 chain 29876 chr6 171115067 + 150805825 150806267 MER1A 529 - 5 529 85181 59 7 8 173 0 1 79 0 34 40 13 54 35 24 29 12 chain 11762 chr6 171115067 + 150806307 150806505 L1MA5A 2387 - 155 344 153209 13 3 0 37 2 0 23 11 9 42 1 0 39 2 1 25 chain 23262 chr6 171115067 + 150814763 150815114 THE1B 368 + 3 368 114374 7 0 3 27 0 5 37 37 33 8 0 11 38 2 1 195 chain 63962 chr6 171115067 + 150826283 150827255 L1MA3 4352 + 3256 4206 51024 34 1 2 8 0 2 52 5 6 543 1 2 189 88 62 24 7 6 20 chain 108687 chr6 171115067 + 150828110 150829367 SVA_B 1603 + 10 1603 34516 12 4 22 398 0 192 177 5 128 37 1 0 14 1 0 184 0 2 315 0 5 101 2 0 6 chain 32236 chr6 171115067 + 150844451 150844881 L1PA7 6471 + 6032 6461 80464 33 16 10 29 0 6 20 1 2 259 9 7 63 chain 38068 chr6 171115067 + 150847363 150848003 MER4A 717 + 0 717 72032 332 0 1 7 1 0 57 4 3 30 119 196 17 15 16 58 chain 5423 chr6 171115067 + 150869973 150870038 LTR24B 570 + 505 570 190779 65 chain 11987 chr6 171115067 + 150878182 150878346 L1PB4 2604 - 34 197 152260 11 8 7 145 chain 24447 chr6 171115067 + 150902420 150902705 AluSp 311 - 16 301 107822 285 chain 26818 chr6 171115067 + 150906414 150906895 Tigger3b 1229 + 343 839 96918 26 18 19 162 12 14 9 0 1 17 0 2 61 60 69 17 0 3 27 9 6 63 chain 7432 chr6 171115067 + 150914978 150915113 MER2 342 - 47 200 174559 14 6 14 33 14 17 31 0 7 37 chain 21637 chr6 171115067 + 150924008 150924244 AluYf4 310 + 73 309 121631 236 chain 4826 chr6 171115067 + 150925582 150925639 MER58C 217 - 116 173 197067 57 chain 4811 chr6 171115067 + 150960612 150960671 L1MA5A 2387 - 94 153 197225 59 chain 50754 chr6 171115067 + 150976286 150977243 L1PA7 6471 + 5828 6470 58460 274 319 0 131 0 4 68 0 8 8 14 6 143 chain 19695 chr6 171115067 + 150992258 150992529 L1PB1 5432 - 331 610 128121 47 9 17 215 chain 17148 chr6 171115067 + 151022604 151022807 L1PA5 6144 - 12 216 135171 150 3 4 50 chain 28321 chr6 171115067 + 151058417 151058727 AluYb8 318 - 9 318 91868 183 1 0 126 chain 27154 chr6 171115067 + 151071649 151071939 AluYa5 310 + 15 304 95744 117 1 0 172 chain 9157 chr6 171115067 + 151102310 151102761 MER75 514 + 380 514 164780 47 323 3 67 0 3 14 chain 24843 chr6 171115067 + 151126074 151126370 AluSp 311 - 15 311 105659 296 chain 60667 chr6 171115067 + 151137015 151138226 Charlie3 2679 - 0 2663 52486 58 25 24 47 1 4 73 10 5 71 6 8 76 0 2 28 1 2 52 313 1753 178 0 12 68 3 2 182 1 0 18 chain 25223 chr6 171115067 + 151148409 151148700 AluSp 311 - 8 300 103618 195 0 1 96 chain 10707 chr6 171115067 + 151159479 151159660 MER30 238 + 47 238 157386 48 16 0 10 4 33 62 3 0 38 chain 54293 chr6 171115067 + 151170262 151171003 LTR12_ 688 + 0 688 56168 121 0 49 41 0 1 153 103 0 323 chain 276943 chr6 171115067 + 151171031 151174434 HERV9-int 5642 + 0 5642 14821 209 1 15 361 0 1 184 0 2249 139 1 5 199 0 3 574 0 2 454 0 1 321 0 1 267 0 1 4 1 0 240 1 0 227 7 5 37 19 17 9 1 0 60 1 0 11 30 7 19 4 0 3 2 0 17 chain 57201 chr6 171115067 + 151177038 151177828 LTR12_ 688 + 0 688 54405 247 8 8 25 0 1 106 103 0 301 chain 44172 chr6 171115067 + 151180748 151181800 HERVK-int 6823 + 5650 6567 63983 68 8 7 23 1 0 100 1 0 32 4 3 123 1 0 51 3 0 5 1 0 4 9 7 73 4 2 6 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 213 137 11 2 0 27 43 32 10 10 4 8 1 0 8 1 0 5 1 0 27 1 0 4 1 0 12 34 25 17 1 0 4 chain 3812 chr6 171115067 + 151185427 151185468 MER2 342 + 151 192 210194 41 chain 26381 chr6 171115067 + 151190310 151190662 L1PA8 5853 - 0 347 98488 23 0 2 68 1 0 19 2 1 43 1 0 9 1 0 9 1 0 72 2 0 7 0 1 37 1 0 56 chain 7328 chr6 171115067 + 151191656 151191751 Tigger1 2417 - 71 166 175247 95 chain 22845 chr6 171115067 + 151217965 151218259 AluY 311 + 3 290 116367 71 0 1 43 6 0 11 3 0 152 0 1 8 chain 12847 chr6 171115067 + 151232560 151232784 MSTA 426 - 0 218 148858 127 5 0 7 1 2 21 35 33 28 chain 27031 chr6 171115067 + 151232791 151233143 THE1A 353 - 1 353 96179 117 2 1 4 0 1 135 1 0 46 0 1 47 chain 11814 chr6 171115067 + 151236308 151236500 MER30 238 + 25 227 152964 67 4 7 9 4 0 10 2 18 17 1 2 23 6 0 49 chain 25864 chr6 171115067 + 151289979 151290281 AluSq4 311 - 7 310 100590 172 0 1 130 chain 15992 chr6 171115067 + 151307566 151307797 MER1B 344 - 6 282 138373 44 8 33 40 6 26 133 chain 3452 chr6 171115067 + 151320221 151320268 Tigger4b 360 + 254 317 216191 37 0 16 10 chain 14900 chr6 171115067 + 151384012 151384180 L1PA5 6144 + 5976 6144 141630 168 chain 20705 chr6 171115067 + 151400670 151400913 AluSp 311 - 57 300 124946 243 chain 21634 chr6 171115067 + 151414541 151414805 AluSg7 307 + 29 293 121642 102 0 1 142 7 6 13 chain 52315 chr6 171115067 + 151448918 151451421 THE1D-int 1627 + 0 1621 57419 13 4 6 8 0 1 85 0 1 161 0 1 9 1747 858 30 0 1 15 17 13 47 1 2 56 0 2 268 1 0 13 0 3 28 chain 34471 chr6 171115067 + 151449200 151449667 LTR10F 562 + 0 562 76955 38 0 2 76 0 115 19 28 0 44 0 1 248 1 6 13 chain 32494 chr6 171115067 + 151450515 151450939 LTR7B 505 + 0 497 80035 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 46 1 0 76 14 13 43 chain 62662 chr6 171115067 + 151489901 151490824 L1PB1 5432 + 4535 5422 51604 92 3 0 442 0 1 4 1 0 29 1 2 9 3 0 26 1 0 6 1 0 12 5 1 8 2 0 53 2 1 16 1 0 40 7 6 13 3 0 6 16 6 19 2 0 5 1 0 14 12 10 14 1 0 21 1 0 31 chain 12718 chr6 171115067 + 151494379 151494521 L1PA3long 6157 + 6015 6157 149388 142 chain 44743 chr6 171115067 + 151504054 151504568 MER9a3 513 + 0 513 63343 258 1 0 255 chain 5757 chr6 171115067 + 151509713 151509779 MER2 342 + 149 215 187575 66 chain 22510 chr6 171115067 + 151523640 151523926 AluSp 311 + 24 308 117984 147 1 0 88 2 1 48 chain 23709 chr6 171115067 + 151532891 151533184 AluSq2 311 + 4 300 111987 59 0 2 68 0 1 166 chain 6445 chr6 171115067 + 151549286 151549424 Tigger3b 1229 - 1026 1189 181678 13 5 17 27 34 47 59 chain 19697 chr6 171115067 + 151551744 151551982 AluY 311 + 58 299 128110 74 0 1 133 9 11 22 chain 10820 chr6 171115067 + 151578731 151578864 L1PA16 3655 - 122 255 156903 133 chain 22333 chr6 171115067 + 151589275 151589572 AluSp 311 + 10 293 118758 95 14 9 172 9 0 7 chain 54199 chr6 171115067 + 151608727 151609358 L1PA7 6471 + 5837 6470 56234 38 0 1 580 1 2 12 chain 7249 chr6 171115067 + 151619978 151620068 HY4 93 - 0 93 175766 60 0 3 30 chain 26450 chr6 171115067 + 151636853 151637205 THE1C 375 - 24 375 98241 93 1 0 68 1 0 8 5 6 176 chain 17995 chr6 171115067 + 151640797 151641012 7SK 245 + 30 245 132868 215 chain 26939 chr6 171115067 + 151649182 151649478 AluY 311 + 2 298 96487 296 chain 9744 chr6 171115067 + 151678335 151678445 AluSp 311 - 24 134 161872 110 chain 15480 chr6 171115067 + 151680593 151680857 MER39B 650 - 82 347 139965 16 14 16 51 4 6 21 4 8 16 0 1 7 1 0 94 13 6 23 chain 19195 chr6 171115067 + 151736715 151736948 AluY 311 + 73 303 129537 22 1 0 38 2 0 170 chain 134213 chr6 171115067 + 151770764 151772351 SVA_D 2077 + 4 2077 27166 17 0 3 20 9 17 378 0 40 246 0 80 10 0 40 61 6 270 32 0 2 10 0 78 38 30 0 42 0 1 688 chain 76279 chr6 171115067 + 151776344 151777320 LTR5_Hs 974 - 0 974 45323 103 20 18 19 8 15 163 1 0 188 0 1 167 8 0 10 0 1 289 chain 19562 chr6 171115067 + 151836966 151837186 AluSc 308 + 46 266 128484 220 chain 85443 chr6 171115067 + 151839774 151840838 MER11A 1151 - 0 1151 41368 91 0 2 196 3 0 56 2 1 119 2 1 389 0 2 64 1 0 31 2 0 21 8 0 24 0 99 55 chain 32782 chr6 171115067 + 151843452 151843919 LTR10F 562 + 0 554 79560 44 0 1 62 4 88 36 7 10 15 7 0 10 8 14 274 chain 36353 chr6 171115067 + 151846418 151846884 LTR7B 505 + 0 488 74425 208 34 0 21 0 55 41 5 6 157 chain 23783 chr6 171115067 + 151857645 151857937 AluSc 308 + 16 308 111571 292 chain 23392 chr6 171115067 + 151894696 151895061 THE1B 368 - 0 368 113690 25 2 4 27 7 6 57 8 7 12 1 0 12 5 9 9 1 0 8 0 2 21 1 0 169 chain 18921 chr6 171115067 + 151922151 151922510 THE1B 368 - 0 368 130313 125 11 19 10 40 39 49 42 44 82 chain 3015 chr6 171115067 + 151951717 151952073 MLT1H2 457 + 73 431 224743 25 290 293 22 4 3 15 chain 403295 chr6 171115067 + 151963873 151969156 L1PB1 5432 - 12 5296 9992 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 25 15 16 20 16 9 0 1 33 20 18 53 2 0 9 26 20 22 5 0 9 2 5 394 5 3 64 19 21 280 0 5 402 0 3 45 0 5 56 0 4 45 5 4 39 8 7 105 0 1 606 0 5 166 8 7 342 5 0 256 1 2 167 6 7 283 0 15 158 0 1 209 1 0 27 0 4 16 1 0 244 5 1 414 0 1 182 0 2 31 1 0 61 1 0 276 chain 59722 chr6 171115067 + 151995162 151995898 L1PA8 5853 - 0 732 52981 92 2 1 18 3 2 49 1 0 12 1 0 71 2 0 46 1 0 188 0 3 250 chain 30558 chr6 171115067 + 152006249 152006567 AluYb8 318 - 0 318 83307 318 chain 536935 chr6 171115067 + 152031709 152038448 L1PA7 6471 - 1 6468 3320 200 6 20 15 4 12 422 307 0 185 0 2 21 0 1 5 0 7 261 0 4 292 0 3 352 0 1 5 1 4 1071 0 2 88 16 13 386 0 4 712 0 1 410 0 1 140 0 1 105 0 3 577 0 7 644 0 1 85 2 0 49 0 1 22 32 8 324 chain 21288 chr6 171115067 + 152056882 152057245 THE1D 372 + 0 360 122907 56 12 3 113 55 62 58 1 0 68 chain 11816 chr6 171115067 + 152080526 152080658 L1PA3long 6157 + 6023 6155 152960 132 chain 31014 chr6 171115067 + 152101052 152101503 L1PA7 6471 + 6086 6470 82488 163 74 8 64 1 0 149 chain 5821 chr6 171115067 + 152102303 152102396 MSTD 398 - 0 91 186927 28 13 11 52 chain 48019 chr6 171115067 + 152108363 152109045 L1PA13 3608 - 123 790 60469 17 1 0 20 9 5 31 0 1 15 9 5 35 1 0 21 1 0 61 3 1 38 1 0 61 1 2 11 2 1 25 1 0 80 1 0 237 chain 8563 chr6 171115067 + 152113897 152113999 Tigger3b 1229 - 538 640 167944 102 chain 24995 chr6 171115067 + 152114031 152114321 AluY 311 + 8 298 104818 290 chain 101419 chr6 171115067 + 152144620 152145753 L1PA5 6144 - 12 1145 36415 1133 chain 68130 chr6 171115067 + 152155051 152155844 L1PA7 6471 + 5678 6470 49191 620 1 0 172 chain 46943 chr6 171115067 + 152168497 152169007 L1PA2 6032 - 624 1134 61265 510 chain 57270 chr6 171115067 + 152169007 152169625 L1PA2 6032 + 5413 6031 54355 618 chain 4898 chr6 171115067 + 152171273 152171348 MLT1C 463 + 10 86 196286 11 6 7 58 chain 55514 chr6 171115067 + 152184194 152184824 L1PA5 6144 - 1403 2046 55358 109 0 13 163 1 0 131 0 1 226 chain 122744 chr6 171115067 + 152184824 152186228 L1PA5 6144 + 4761 6139 30142 399 30 0 133 2 6 840 chain 44853 chr6 171115067 + 152187471 152188001 L1PA7 6471 - 1 538 63229 9 2 0 34 0 9 485 chain 139091 chr6 171115067 + 152219535 152221254 SVA_D 2077 - 0 1750 26277 632 1 2 36 15 14 4 0 1 132 97 0 218 0 2 41 14 137 97 3 0 33 0 3 232 0 1 41 1 2 122 chain 6605 chr6 171115067 + 152220355 152220452 SVA_D 2077 - 948 1048 86699 36 1 2 53 0 2 7 chain 11918 chr6 171115067 + 152227066 152227204 MER85 139 + 0 139 152524 126 0 1 12 chain 13548 chr6 171115067 + 152232042 152232260 MER1B 344 - 78 302 146176 49 3 0 16 18 24 10 1 0 79 3 7 39 chain 26433 chr6 171115067 + 152233868 152234220 L1PA8 5853 + 5508 5853 98297 51 6 5 45 2 0 70 1 0 12 1 0 49 2 1 19 1 0 93 chain 8662 chr6 171115067 + 152250645 152250758 L1PA8 5853 + 5741 5853 167413 19 2 1 92 chain 210730 chr6 171115067 + 152252590 152254866 L1PA2 6032 - 4 2280 18456 2276 chain 74598 chr6 171115067 + 152288322 152289197 L1PA7 6471 - 3 879 46211 130 1 0 462 0 1 260 0 1 22 chain 42408 chr6 171115067 + 152289197 152289683 L1PA7 6471 + 5101 5586 66020 323 1 0 162 chain 13694 chr6 171115067 + 152292349 152292636 L1PB1 5432 - 10 271 145620 18 1 0 12 1 0 22 1 0 23 64 46 21 1 0 44 1 0 15 2 1 52 2 0 7 chain 52448 chr6 171115067 + 152293010 152293747 L1PB 1623 + 115 849 57323 50 1 3 19 1 0 4 2 0 51 7 8 19 2 1 127 4 2 86 6 5 93 0 1 265 chain 32574 chr6 171115067 + 152342160 152342591 MLT2A1 477 + 0 477 79894 142 0 1 26 1 5 28 6 7 176 3 43 49 chain 20385 chr6 171115067 + 152342805 152343177 THE1B 368 + 0 368 125945 49 1 0 59 26 27 41 24 17 8 0 1 12 13 16 12 3 2 62 1 0 4 1 2 56 chain 537632 chr6 171115067 + 152349300 152355419 L1PA5 6144 + 0 6129 3213 718 0 3 1307 0 1 37 0 3 1433 1 0 891 0 1 778 2 0 304 1 0 5 0 1 269 0 3 225 11 12 17 0 1 120 chain 20893 chr6 171115067 + 152357231 152357517 AluY 311 + 9 305 124301 25 16 24 67 1 3 177 chain 424428 chr6 171115067 + 152360079 152365523 HERVL-int 5654 - 194 5654 9434 27 4 0 98 20 18 327 0 2 42 6 14 99 37 38 853 4 0 276 0 2 399 0 1 184 0 3 404 0 1 371 3 11 198 1 2 92 5 6 273 4 0 4 0 1 93 2 1 62 0 5 6 29 24 13 0 1 617 1 0 204 13 19 333 5 1 335 chain 486193 chr6 171115067 + 152399637 152405564 L1PA6 6164 + 0 6162 7513 154 5 0 6 5 10 114 11 10 155 8 0 118 1 0 182 0 1 47 0 17 636 1 0 338 2 4 64 15 3 366 0 7 170 6 31 124 5 3 623 6 7 126 0 1 169 18 30 12 1 2 1113 1 0 396 0 10 225 5 1 45 0 4 10 1 0 11 9 194 623 chain 7476 chr6 171115067 + 152405612 152405706 THE1A 353 + 246 341 174300 14 1 2 79 chain 29293 chr6 171115067 + 152426910 152427227 AluYb8 318 - 7 318 87610 188 6 0 123 chain 31149 chr6 171115067 + 152439479 152439914 L1PA8 5853 + 5434 5853 82257 124 0 5 47 7 5 63 2 1 9 17 1 51 2 1 19 1 0 93 chain 19457 chr6 171115067 + 152481143 152481372 AluSc5 308 - 12 240 128799 163 1 0 65 chain 25378 chr6 171115067 + 152490425 152490717 AluY 311 + 10 303 102791 122 0 1 170 chain 40284 chr6 171115067 + 152513868 152514518 L1M1 2793 - 98 730 68895 10 2 1 11 2 0 3 11 0 41 1 0 82 0 1 105 2 0 8 1 0 25 0 7 70 3 0 14 1 0 12 4 8 19 0 1 4 1 0 14 6 7 140 4 0 6 5 0 43 chain 13786 chr6 171115067 + 152551974 152552195 MER30 238 - 0 238 145316 39 3 0 33 6 0 8 12 18 16 4 17 88 0 7 12 chain 27603 chr6 171115067 + 152572611 152572907 AluYa5 310 + 0 295 94338 132 1 0 163 chain 12782 chr6 171115067 + 152601469 152601683 MER30 238 + 1 238 149128 56 3 4 29 4 9 11 4 0 9 1 19 11 0 6 35 3 0 48 chain 25024 chr6 171115067 + 152667677 152667967 AluY 311 + 14 305 104661 118 0 1 172 chain 28388 chr6 171115067 + 152685102 152685463 THE1C 375 + 13 375 91628 172 1 2 188 chain 25529 chr6 171115067 + 152687188 152687493 AluSp 311 + 2 307 102099 18 0 1 260 0 1 20 2 0 5 chain 26143 chr6 171115067 + 152692280 152692629 THE1C 375 + 0 351 99433 122 3 0 13 0 4 45 12 13 154 chain 42815 chr6 171115067 + 152714963 152715459 L1PA7 6471 - 1 497 65631 326 1 0 7 0 1 162 chain 25235 chr6 171115067 + 152733278 152733576 AluY 311 + 4 300 103560 129 2 0 167 chain 6737 chr6 171115067 + 152739274 152739442 MER67C 710 + 79 259 179422 37 76 88 55 chain 29310 chr6 171115067 + 152771143 152771515 THE1C 375 + 7 375 87511 111 5 2 230 1 0 25 chain 2523 chr6 171115067 + 152811828 152811871 LTR7C 471 + 419 463 232884 21 6 7 16 chain 2719 chr6 171115067 + 152812372 152812439 HERVH-int 3825 + 380 446 229922 16 25 24 26 chain 43796 chr6 171115067 + 152816574 152817092 LTR10F 562 + 0 551 64460 201 0 31 28 0 2 289 chain 3425 chr6 171115067 + 152826813 152826850 tRNA-Tyr-TAC 38 - 1 38 216675 37 chain 83019 chr6 171115067 + 152834800 152835769 L1PA7 6471 + 5496 6466 42326 125 1 0 77 0 2 644 0 2 113 2 0 7 chain 19483 chr6 171115067 + 152840061 152840285 L1PA4 6152 + 5930 6152 128706 217 2 0 5 chain 139035 chr6 171115067 + 152843463 152845502 L1PB3 3668 - 106 2126 26291 33 3 1 25 1 0 8 2 0 13 25 8 79 6 5 4 0 1 10 0 2 83 1 0 6 7 9 193 11 13 5 0 2 51 11 7 16 2 0 112 0 1 29 0 1 73 15 6 7 0 9 17 2 0 68 2 1 247 3 5 255 1 2 39 0 3 29 49 43 67 4 6 100 1 0 4 0 1 194 0 1 126 chain 8275 chr6 171115067 + 152858823 152858918 L1P1 4361 - 135 229 169542 78 1 0 16 chain 11867 chr6 171115067 + 152883804 152883934 L1PA7 6471 + 6327 6457 152751 130 chain 26802 chr6 171115067 + 152894319 152894613 L1PA4 6152 - 1 296 96974 141 0 1 153 chain 57601 chr6 171115067 + 152900948 152901863 L1PA15 4387 - 21 922 54187 10 1 0 28 9 5 10 2 0 43 15 20 33 1 0 15 4 0 17 2 1 54 1 0 26 1 0 68 6 5 98 1 0 37 26 28 39 4 0 16 2 0 197 0 1 45 5 6 99 chain 28497 chr6 171115067 + 152906083 152906461 THE1C 375 + 0 375 91193 185 2 3 14 2 0 56 1 0 91 1 0 26 chain 25859 chr6 171115067 + 152919230 152919589 THE1B 368 + 0 368 100609 169 1 0 29 4 2 14 17 29 125 chain 55931 chr6 171115067 + 152928579 152929275 L1PA8A 6298 + 5583 6288 55167 166 0 1 3 0 1 31 0 6 471 0 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chain 352697 chr6 171115067 + 153029995 153033791 L1HS 6032 - 2 6032 11531 3561 8 2242 227 chain 26021 chr6 171115067 + 153038538 153038892 THE1B 368 + 0 368 99941 40 0 15 111 8 6 26 4 6 89 1 0 75 chain 5752 chr6 171115067 + 153041466 153041535 MLT1H 522 - 377 446 187620 69 chain 26159 chr6 171115067 + 153052513 153052813 L1PA5 6144 - 6 306 99370 300 chain 23050 chr6 171115067 + 153083668 153083954 THE1B 368 - 81 368 115394 112 1 0 65 2 3 82 0 1 24 chain 40536 chr6 171115067 + 153087036 153087589 MLT2A2 560 - 0 560 68540 147 10 21 90 5 3 54 3 2 63 1 0 180 chain 14844 chr6 171115067 + 153107691 153108027 L1PB1 5432 - 9 315 141799 5 1 0 4 1 0 10 1 0 12 1 0 22 1 0 24 2 0 13 10 7 16 7 0 10 2 0 5 1 0 13 1 0 22 3 4 19 19 17 52 18 12 12 1 0 6 1 0 21 chain 25342 chr6 171115067 + 153125521 153125880 THE1B 368 + 0 368 103005 44 0 15 54 0 1 54 2 0 24 3 0 95 22 20 61 chain 50964 chr6 171115067 + 153139076 153139727 L1PA7 6471 + 5831 6464 58333 82 20 6 175 1 0 182 1 0 9 4 2 177 chain 6610 chr6 171115067 + 153143196 153143280 MER96B 391 + 72 156 180381 84 chain 125391 chr6 171115067 + 153155296 153156793 LTR12C 1709 + 0 1709 29280 104 5 4 684 10 119 16 0 1 183 1 0 5 3 1 107 0 4 185 0 102 194 chain 21049 chr6 171115067 + 153156884 153157567 THE1D 372 - 0 354 123733 32 1 0 128 0 1 19 333 23 59 63 44 48 chain 56716 chr6 171115067 + 153165406 153166030 L1PA3long 6157 - 0 625 54708 338 0 1 286 chain 5113 chr6 171115067 + 153177802 153177876 MADE1 96 + 0 96 193936 30 2 18 13 0 6 29 chain 26318 chr6 171115067 + 153196928 153197229 AluY 311 + 2 304 98747 124 0 1 177 chain 8030 chr6 171115067 + 153197815 153197950 L1PB1 5432 + 5303 5427 170868 24 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 2 0 5 1 0 4 chain 287070 chr6 171115067 + 153203879 153207327 L1P2 5180 + 65 3544 14216 80 7 6 45 9 8 43 1 0 155 6 23 36 1 0 50 0 10 9 0 1 256 1 0 6 1 0 184 1 5 63 0 1 408 0 1 937 0 4 41 0 1 21 2 0 100 0 1 617 1 0 367 chain 40076 chr6 171115067 + 153207327 153207786 L1PA6 6164 + 5691 6153 69216 263 0 3 196 chain 37596 chr6 171115067 + 153230114 153230862 L1PA15 4387 - 21 752 72690 10 1 0 27 5 0 14 3 1 96 2 1 10 12 8 14 1 0 36 110 108 28 1 3 9 0 3 65 1 0 29 16 14 16 0 2 43 4 0 17 7 5 150 2 3 19 chain 35962 chr6 171115067 + 153230868 153231381 MLT2A2 560 + 0 554 74941 169 7 6 8 1 0 125 10 42 56 0 11 84 1 0 4 5 6 43 chain 2947 chr6 171115067 + 153237512 153237711 MER67C 710 + 9 189 226179 28 148 129 23 chain 38237 chr6 171115067 + 153237732 153238670 L1PB1 5432 + 4841 5422 71790 34 0 1 138 0 2 87 7 0 11 1 0 24 1 0 9 1 0 11 4 0 10 324 2 49 1 0 17 1 0 44 1 0 13 31 18 16 25 20 23 1 0 21 1 0 13 1 0 18 chain 52438 chr6 171115067 + 153244744 153245336 L1PA4 6152 - 18 610 57329 592 chain 21763 chr6 171115067 + 153287371 153287627 LTR12C 1709 - 1453 1709 121164 256 chain 258752 chr6 171115067 + 153287627 153290818 L1PA7 6471 - 132 3354 15762 25 1 2 25 8 0 8 1 4 648 0 6 540 0 2 140 0 1 259 0 8 106 8 9 82 0 1 287 0 2 172 1 5 144 1 0 189 0 5 87 1 6 28 0 4 85 0 7 77 5 6 13 0 1 64 12 0 174 chain 3861 chr6 171115067 + 153309704 153309766 MLT2D 439 + 54 118 209444 30 5 7 27 chain 53510 chr6 171115067 + 153335977 153336787 Tigger1 2417 + 1499 2297 56674 69 1 4 177 51 52 101 0 3 133 0 2 71 1 2 43 4 0 87 6 8 22 30 10 14 chain 8073 chr6 171115067 + 153385365 153385474 L1MA2 4263 + 3 114 170628 19 2 1 75 0 3 13 chain 78890 chr6 171115067 + 153388199 153389308 L1MA2 4263 + 2175 3278 44114 22 12 7 24 1 0 82 0 3 18 1 0 201 2 1 20 0 4 87 4 1 17 0 1 34 5 0 184 33 34 60 0 2 280 1 0 21 chain 3063 chr6 171115067 + 153399818 153399865 MER45R 1085 - 101 149 223763 34 1 2 12 chain 5004 chr6 171115067 + 153411857 153411912 Tigger7 736 + 170 225 195105 55 chain 531801 chr6 171115067 + 153431779 153438220 L1PA7 6471 + 5 6468 3987 220 1 16 10 16 1 152 4 0 179 4 6 600 0 8 86 0 2 249 1 10 89 4 6 49 0 1 115 0 1 421 4 5 117 0 1 137 5 1 146 4 0 191 5 6 280 0 1 225 1 0 167 1 0 154 0 1 349 0 2 468 2 1 296 0 3 41 0 4 328 3 5 342 0 1 122 2 1 281 2 1 558 3 0 7 chain 3009 chr6 171115067 + 153454217 153454253 MIR 256 - 82 118 224870 36 chain 119385 chr6 171115067 + 153454575 153455955 LTR12C 1709 + 0 1709 31270 650 0 278 47 0 1 95 0 47 106 0 4 137 1 0 344 chain 15304 chr6 171115067 + 153486163 153486379 L1PA8 5853 + 5642 5853 140481 40 18 15 43 2 1 19 1 0 93 chain 100587 chr6 171115067 + 153508866 153509964 L1PA3long 6157 - 0 1098 36605 1098 chain 89191 chr6 171115067 + 153516848 153517824 L1PA4 6152 + 5176 6152 39932 976 chain 3063 chr6 171115067 + 153546371 153546407 MER119 576 + 538 574 223762 36 chain 6067 chr6 171115067 + 153571621 153571998 MLT1C 463 - 26 400 184682 30 34 33 20 143 146 14 80 75 56 chain 24926 chr6 171115067 + 153594070 153594358 AluSp 311 - 12 300 105183 288 chain 66021 chr6 171115067 + 153597339 153598214 L1PA11 4918 - 407 1270 50084 23 1 0 14 2 0 27 2 1 38 2 1 13 0 3 1 4 0 13 0 1 48 5 0 147 1 0 519 1 0 14 chain 155824 chr6 171115067 + 153605199 153606928 L1PA4 6152 - 17 1748 23878 1012 0 1 482 0 1 235 chain 38416 chr6 171115067 + 153620710 153621161 L1PA7 6471 - 2 451 71557 5 3 0 90 0 1 353 chain 20528 chr6 171115067 + 153621161 153621391 L1PA7 6471 + 5767 5998 125549 209 0 1 21 chain 13490 chr6 171115067 + 153634454 153634666 L1PA8 5853 - 0 213 146388 93 1 0 19 2 1 38 0 4 7 14 13 38 chain 32162 chr6 171115067 + 153657139 153657529 THE1B-int 1605 + 1181 1598 80596 165 5 32 220 chain 131087 chr6 171115067 + 153667689 153669130 L1PA3long 6157 + 4709 6149 27838 900 0 1 43 2 0 496 chain 153502 chr6 171115067 + 153675747 153677940 MER61-int 3695 + 1115 3303 24158 7 0 5 38 0 3 64 1 0 64 46 20 182 1 0 66 0 1 561 9 6 51 0 29 15 7 1 102 14 13 77 0 1 108 8 15 158 1 4 59 1 0 68 0 1 14 27 23 17 56 57 206 1 0 11 20 9 5 1 0 127 chain 10536 chr6 171115067 + 153679012 153679219 HSMAR2 1300 + 720 919 158112 52 9 11 9 14 0 34 14 15 61 2 5 12 chain 22072 chr6 171115067 + 153697780 153698061 AluSp 311 - 19 299 119914 164 2 0 7 0 1 108 chain 9149 chr6 171115067 + 153706134 153706249 MLT1B 390 + 247 362 164812 115 chain 167406 chr6 171115067 + 153717465 153719304 L1PA3long 6157 - 1 1842 22349 610 0 3 816 2 1 411 chain 7694 chr6 171115067 + 153730682 153730774 MER4A1_ 611 - 511 603 172970 92 chain 42679 chr6 171115067 + 153732125 153732662 MER41A 554 - 0 536 65799 181 1 0 355 chain 35383 chr6 171115067 + 153738850 153739303 MER4A1 472 + 0 472 75689 224 0 21 186 2 0 41 chain 25413 chr6 171115067 + 153739772 153740078 MER4E 760 - 8 313 102621 218 6 5 82 chain 7322 chr6 171115067 + 153741575 153741661 5S 121 + 3 89 175287 86 chain 189102 chr6 171115067 + 153763595 153767124 MER4-int 2692 - 0 2566 20135 50 419 0 17 1 0 50 0 10 75 0 1 204 0 3 51 1 0 31 0 1 17 1 0 5 1 0 75 0 1 87 0 1 124 1 0 66 1 5 63 1 3 105 317 0 144 2 1 5 0 1 28 2 3 33 1 0 13 9 25 289 1 0 101 0 1 234 1 5 45 0 2 50 269 0 52 0 1 17 0 1 470 chain 31819 chr6 171115067 + 153763652 153764064 LTR7 482 - 0 482 81131 188 0 31 38 0 1 109 10 48 67 chain 19842 chr6 171115067 + 153766328 153766585 AluY 311 + 38 300 127672 94 0 1 135 6 10 22 chain 36779 chr6 171115067 + 153771700 153772162 LTR2 463 + 1 463 73829 75 1 0 270 28 29 88 chain 24266 chr6 171115067 + 153773625 153773986 THE1D 372 + 0 372 108868 57 4 6 97 32 34 110 0 7 61 chain 14066 chr6 171115067 + 153817068 153817226 L1PA3long 6157 - 0 158 144333 158 chain 397177 chr6 171115067 + 153837976 153842761 L1PA6 6164 - 4 6164 10192 845 1 0 316 0 2 7 9 7 56 4 13 240 0 1 358 2 1 246 6 1371 371 0 1 213 0 1 55 0 1 589 8 5 5 2 0 363 0 3 555 1 3 336 38 37 159 chain 18072 chr6 171115067 + 153844154 153844449 THE1B 368 + 0 354 132672 35 0 5 67 24 79 12 3 6 18 7 4 4 1 0 124 chain 33762 chr6 171115067 + 153849220 153849759 MLT2A2 560 - 0 560 77999 143 0 11 45 0 3 48 8 6 31 66 67 26 1 0 130 1 10 40 chain 25513 chr6 171115067 + 153851032 153851391 THE1B 368 + 0 368 102170 44 0 15 104 6 5 25 4 1 77 1 0 22 1 0 75 chain 3877 chr6 171115067 + 153861988 153862032 LTR26 622 + 0 44 209195 44 chain 28486 chr6 171115067 + 153897344 153897643 AluYk12 309 + 0 299 91239 299 chain 10729 chr6 171115067 + 153908806 153908945 THE1C 375 + 235 373 157286 106 1 0 32 chain 11344 chr6 171115067 + 153930828 153930993 L1PA8 5853 + 5691 5853 154907 5 1 0 44 2 1 16 4 3 93 chain 106831 chr6 171115067 + 153952285 153953605 L1PA7 6471 - 10 1332 35029 9 1 0 177 0 14 61 0 1 42 1 0 189 3 2 263 2 3 70 6 8 123 7 0 43 6 0 317 chain 14331 chr6 171115067 + 153957657 153957870 L1MA1 4479 - 317 524 143455 11 1 0 8 2 1 35 2 0 29 1 0 106 1 0 17 chain 34382 chr6 171115067 + 153985011 153985482 MER4A1 472 + 0 472 77091 225 8 30 10 27 6 201 chain 10287 chr6 171115067 + 153986576 153986702 PRIMA4_LTR 623 - 8 134 159201 126 chain 18620 chr6 171115067 + 153999754 153999995 L1PA5 6144 - 3 266 131160 106 7 36 9 7 0 112 chain 17281 chr6 171115067 + 154000000 154000194 L1PA6 6164 - 270 464 134829 194 chain 4500 chr6 171115067 + 154002584 154002639 U6 107 + 3 58 200771 55 chain 3868 chr6 171115067 + 154003257 154003301 L1PA15 4387 + 79 123 209334 44 chain 20927 chr6 171115067 + 154008680 154008933 L1PA7 6471 - 136 390 123874 26 1 2 226 chain 40145 chr6 171115067 + 154008933 154009757 L1PA6 6164 - 266 809 69117 55 303 0 122 11 40 110 10 0 33 1 4 179 chain 319357 chr6 171115067 + 154012182 154015772 L1PA5 6144 - 0 3604 12622 11 1 3 829 0 4 951 1 2 72 4 0 6 0 9 200 0 1 898 1 0 580 0 2 36 chain 53547 chr6 171115067 + 154051793 154052484 L1P3 4156 + 3443 4139 56643 51 1 0 47 0 4 261 0 4 188 1 2 107 2 0 7 2 1 24 chain 36108 chr6 171115067 + 154058687 154059179 MER9a3 513 - 0 513 74755 77 0 1 98 0 21 58 6 5 73 0 1 77 20 18 70 0 1 13 chain 13368 chr6 171115067 + 154072687 154073010 L1PB1 5432 - 10 318 146821 5 1 0 13 16 14 20 1 0 12 0 15 11 1 0 4 4 2 15 27 15 16 1 0 42 8 7 9 1 0 54 2 0 9 2 0 3 2 0 12 1 0 5 2 1 24 chain 104529 chr6 171115067 + 154084078 154085603 L1PB3 3668 + 2061 3613 35614 46 3 0 109 3 4 325 0 45 77 4 3 160 0 4 5 1 2 147 0 2 8 3 0 292 1 0 82 20 19 85 17 6 19 8 7 20 3 1 28 11 12 12 3 2 12 8 5 13 chain 168337 chr6 171115067 + 154105197 154107294 L1PA8A 6298 + 4179 6289 22246 178 0 1 467 5 4 349 0 1 163 0 10 51 1 2 84 1 4 299 1 3 181 2 0 102 1 0 14 6 5 192 chain 12389 chr6 171115067 + 154108571 154108815 MER61A 341 + 106 340 150673 48 71 61 9 0 1 15 1 0 100 chain 29788 chr6 171115067 + 154110591 154110906 AluYb8 318 - 3 318 85518 315 chain 8013 chr6 171115067 + 154119855 154119967 MER51-int 1546 - 804 930 170980 7 0 2 26 5 17 74 chain 13179 chr6 171115067 + 154120515 154120684 MER57-int 2662 - 1578 1759 147553 80 0 13 45 1 0 43 chain 55952 chr6 171115067 + 154142518 154143333 LTR12_ 688 + 0 688 55150 84 25 0 58 2 3 308 103 0 235 chain 16799 chr6 171115067 + 154144853 154145106 THE1B 368 - 102 368 136119 64 2 0 28 9 8 58 0 1 33 15 30 44 chain 3964 chr6 171115067 + 154172858 154172908 MLT2A2 560 + 506 560 207928 44 0 4 6 chain 3694 chr6 171115067 + 154177641 154177916 LTR12C 1709 - 641 838 212020 35 216 138 24 chain 233693 chr6 171115067 + 154188247 154191164 L1PA7 6471 + 3348 6464 17104 45 0 1 90 3 2 76 0 183 79 0 1 36 3 2 437 0 3 526 0 1 5 0 6 205 5 9 49 0 31 287 0 1 102 39 0 96 0 3 544 0 1 80 1 0 15 0 8 186 2 0 6 chain 36691 chr6 171115067 + 154206071 154206519 MER4A1 472 - 0 472 73969 204 0 21 198 0 1 32 0 2 14 chain 181020 chr6 171115067 + 154206526 154208902 MER4-int 2692 - 0 2407 20897 205 0 5 26 1 0 32 0 4 6 10 6 18 7 4 108 3 2 5 0 1 111 1 2 19 0 1 15 1 0 96 3 7 21 1 0 106 1 3 23 2 1 86 0 1 230 2 1 91 0 4 210 0 3 5 3 0 323 1 0 52 0 5 64 0 13 84 0 2 215 0 2 189 chain 8148 chr6 171115067 + 154208918 154209047 MER4A1 472 - 292 412 170243 21 7 6 23 9 1 69 chain 2985 chr6 171115067 + 154209048 154209082 MER4A1 472 - 412 446 225344 34 chain 6107 chr6 171115067 + 154212534 154212628 LTR54B 464 + 215 320 184367 61 5 18 6 2 0 20 chain 3270 chr6 171115067 + 154217267 154217304 Zaphod 902 + 579 616 219608 37 chain 19313 chr6 171115067 + 154227954 154228331 THE1A 353 + 0 353 129208 15 2 0 32 0 1 27 60 59 99 6 10 11 26 1 23 1 0 75 chain 119407 chr6 171115067 + 154228331 154229879 THE1A-int 1579 + 0 1570 31265 304 0 7 257 3 1 48 1 2 52 1 0 5 0 1 403 4 1 72 0 7 56 0 9 58 10 12 20 0 1 254 chain 29350 chr6 171115067 + 154231580 154231959 MLT2A1 477 - 92 475 87299 178 2 0 35 0 4 27 8 10 129 chain 162990 chr6 171115067 + 154231961 154234033 HERVL-int 5654 - 0 3052 22942 46 5 7 170 0 1 132 13 23 676 0 934 50 18 19 187 5 21 137 1 2 4 1 0 525 0 1 30 0 15 72 chain 5490 chr6 171115067 + 154234041 154234105 MLT2A1 477 - 413 477 190138 64 chain 37289 chr6 171115067 + 154237984 154238467 L1PA8 5853 - 0 514 73098 93 1 0 16 1 0 51 1 0 13 1 37 35 2 0 44 1 0 144 1 2 79 chain 7851 chr6 171115067 + 154243864 154243952 LTR7Y 441 + 1 89 171992 88 chain 234621 chr6 171115067 + 154243952 154246660 HERVH-int 3825 + 877 3825 17057 564 0 1 239 8 35 1354 9 11 39 8 218 262 0 2 209 2 0 14 chain 31199 chr6 171115067 + 154247910 154248338 LTR7B 505 + 0 503 82163 105 0 10 60 0 38 12 3 27 18 0 1 7 0 2 38 0 1 46 1 0 23 0 1 52 14 13 49 chain 29628 chr6 171115067 + 154250933 154251500 L1PA11 4918 - 290 820 86128 17 63 47 10 1 0 14 56 43 9 1 0 14 2 0 67 2 0 13 2 1 9 14 18 38 5 0 230 chain 8009 chr6 171115067 + 154252809 154252906 MLT2B4 540 + 0 97 170996 97 chain 192049 chr6 171115067 + 154256371 154259160 L1PA11 4918 - 289 3025 19865 18 130 102 19 5 4 11 2 0 9 1 0 134 4 0 10 10 9 106 13 0 314 0 4 158 0 1 266 2 5 337 0 1 215 0 6 8 14 8 61 46 45 63 3 0 153 45 24 213 0 4 57 0 4 12 2 0 6 0 2 57 0 2 150 3 6 132 chain 71266 chr6 171115067 + 154275153 154276045 L1PA7 6471 - 4 899 47820 18 2 1 448 11 12 64 0 1 168 0 2 132 3 2 40 0 1 6 chain 148324 chr6 171115067 + 154276050 154277846 L1PA7 6471 + 3774 5568 24840 315 16 8 380 0 1 162 0 14 17 10 1 896 chain 5003 chr6 171115067 + 154278415 154278477 MSTB 430 - 48 113 195107 52 0 3 10 chain 27402 chr6 171115067 + 154278480 154278939 MER51B 395 + 0 395 94963 76 72 10 99 1 0 44 15 14 152 chain 32827 chr6 171115067 + 154281061 154281577 MER41A 554 + 0 533 79494 151 7 13 16 37 38 25 8 11 5 3 0 106 2 6 56 0 1 40 0 5 60 chain 7214 chr6 171115067 + 154287648 154287732 L1PA4 6152 + 6069 6152 175975 30 1 0 53 chain 55899 chr6 171115067 + 154300148 154300828 L1P1 4361 + 89 760 55184 393 1 0 92 1 0 118 7 0 68 chain 4682 chr6 171115067 + 154316425 154316762 MLT2D 439 + 75 437 198735 18 5 7 16 0 3 15 247 267 36 chain 3102 chr6 171115067 + 154320140 154320180 MLT2A2 560 - 0 44 222901 6 0 4 34 chain 110998 chr6 171115067 + 154346352 154348414 L1M1 2793 - 114 2125 33930 5 1 0 46 1 0 64 5 1 122 2 1 145 59 60 23 24 23 84 17 20 325 1 2 47 21 29 9 4 2 74 1 0 292 8 7 12 36 21 17 2 0 69 1 0 83 0 2 30 70 69 55 58 55 32 21 14 9 2 0 27 7 6 11 113 91 27 chain 60835 chr6 171115067 + 154372700 154373477 L1PA8 5853 + 5081 5853 52412 63 0 1 419 1 0 44 2 0 74 1 0 12 1 0 46 2 1 112 chain 37486 chr6 171115067 + 154424704 154425167 MER41A 554 - 87 554 72833 55 0 4 408 chain 42484 chr6 171115067 + 154444653 154445191 MER41B 635 - 93 635 66030 33 0 1 341 0 2 38 1 2 125 chain 29401 chr6 171115067 + 154446926 154447236 AluYa5 310 - 0 310 87063 310 chain 511241 chr6 171115067 + 154493303 154499430 L1PA6 6164 + 0 6162 6046 449 19 0 118 1 0 135 5 4 88 0 17 443 1 0 958 0 2 1001 5 2 57 0 5 1083 0 4 222 0 8 21 9 11 43 0 20 180 0 2 1289 chain 18592 chr6 171115067 + 154511977 154512202 AluY 311 + 69 295 131251 57 0 1 168 chain 58185 chr6 171115067 + 154513647 154514632 L1PB1 5432 + 4469 5427 53881 160 7 1 74 29 20 67 7 15 80 2 0 113 1 0 11 0 2 91 16 14 21 1 0 6 1 0 14 9 4 6 2 0 68 1 0 32 10 15 13 1 0 4 23 12 15 2 0 5 1 0 4 13 24 10 1 0 21 1 0 13 4 0 18 2 0 5 chain 66810 chr6 171115067 + 154584389 154585123 SVA_D 2077 - 9 968 49725 526 0 225 208 chain 14355 chr6 171115067 + 154607304 154607494 L1PA8 5853 + 5670 5853 143357 9 1 0 9 1 0 10 3 0 42 2 1 19 1 0 93 chain 28045 chr6 171115067 + 154628268 154628637 THE1B 368 + 0 368 92838 15 2 0 25 0 5 123 1 0 4 1 0 4 0 1 114 3 0 77 chain 3580 chr6 171115067 + 154628637 154628682 MLT1B 390 - 315 361 213984 20 0 1 25 chain 101632 chr6 171115067 + 154647419 154648774 L1PA11 4918 + 3236 4567 36363 147 0 4 101 5 6 834 5 0 65 2 1 13 5 0 68 2 0 13 1 0 23 42 28 15 1 0 13 chain 5744 chr6 171115067 + 154652044 154652157 MER50 708 + 9 128 187697 40 32 34 21 0 4 20 chain 29852 chr6 171115067 + 154654300 154654699 MLT2A1 477 + 0 399 85273 169 1 5 5 0 2 101 1 0 46 0 1 42 2 0 14 4 0 14 chain 13078 chr6 171115067 + 154660094 154660336 LTR23 429 + 133 390 147927 41 25 41 7 0 2 56 1 0 68 26 24 18 chain 12170 chr6 171115067 + 154661221 154661365 MER4A1 472 - 1 145 151539 144 chain 45224 chr6 171115067 + 154664831 154665452 LTR9B 643 + 17 643 62801 98 0 1 71 0 1 13 8 9 219 21 22 143 3 4 45 chain 22712 chr6 171115067 + 154685587 154685853 AluSg7 307 + 40 307 117022 91 0 1 175 chain 25003 chr6 171115067 + 154686528 154686800 AluY 311 + 27 300 104762 105 0 1 167 chain 5622 chr6 171115067 + 154712675 154712747 MLT1B 390 - 290 363 188854 49 0 1 23 chain 7417 chr6 171115067 + 154741274 154741505 L1MA8 2339 + 1989 2187 174669 16 5 4 70 113 81 27 chain 24361 chr6 171115067 + 154763478 154763749 AluY 311 + 4 276 108310 122 0 1 149 chain 25011 chr6 171115067 + 154815206 154815568 THE1C 375 - 6 368 104732 150 42 42 170 chain 3035 chr6 171115067 + 154865756 154865808 MER5A 189 + 138 189 224294 7 0 1 21 6 4 18 chain 9479 chr6 171115067 + 154954545 154954661 MLT1A0 366 + 34 150 163166 116 chain 32898 chr6 171115067 + 154960173 154960556 L1PA7 6471 - 4 385 79373 8 2 0 373 chain 17191 chr6 171115067 + 154962002 154962301 Tigger3b 1229 + 712 1013 135059 24 5 9 25 5 6 47 22 19 99 1 0 26 7 8 38 chain 18999 chr6 171115067 + 154962798 154963028 AluSg 306 + 57 287 130115 230 chain 3317 chr6 171115067 + 154965426 154965466 MLT1B 390 + 0 40 218637 40 chain 23258 chr6 171115067 + 154972290 154972635 THE1B 368 - 12 368 114399 44 7 6 64 16 28 12 1 0 7 4 6 20 1 0 169 chain 31681 chr6 171115067 + 154977224 154977665 MLT2A1 477 + 0 475 81353 142 0 1 26 1 5 150 1 0 52 29 59 40 chain 43825 chr6 171115067 + 155000437 155001312 MER41A 554 + 0 554 64418 93 0 1 266 323 0 69 1 2 123 chain 145191 chr6 171115067 + 155007770 155009399 SVA_D 2077 + 12 2075 25291 27 18 1 502 0 40 22 0 1 156 0 40 77 0 183 115 0 90 81 1 98 630 chain 11966 chr6 171115067 + 155038024 155038212 MSTB1 431 - 225 404 152335 65 10 0 5 2 0 42 0 1 29 8 10 27 chain 28443 chr6 171115067 + 155045200 155045500 AluYa5 310 - 11 310 91407 173 1 0 126 chain 46888 chr6 171115067 + 155101509 155102123 L1PA8 5853 - 6 614 61316 85 3 2 19 2 1 61 10 9 63 2 0 43 1 0 325 chain 31963 chr6 171115067 + 155103670 155104142 MLT2A1 477 - 7 477 80915 37 4 0 6 6 0 7 18 35 13 12 0 49 1 0 149 1 5 169 chain 18473 chr6 171115067 + 155128577 155128801 AluSg7 307 - 72 296 131577 108 1 0 18 0 1 97 chain 13761 chr6 171115067 + 155129472 155129709 MER30 238 + 0 238 145400 13 31 23 73 4 0 15 1 14 100 chain 8493 chr6 171115067 + 155132564 155132671 L1PA8 5853 - 0 106 168328 93 1 0 13 chain 38511 chr6 171115067 + 155132674 155133138 L1PA6 6164 - 2 465 71422 8 2 0 145 1 0 298 0 2 10 chain 10481 chr6 171115067 + 155133440 155133619 Tigger1 2417 + 2208 2387 158333 11 0 1 28 3 0 78 26 28 33 chain 24480 chr6 171115067 + 155172173 155172449 AluSp 311 - 34 311 107653 41 0 1 235 chain 3055 chr6 171115067 + 155176746 155176793 MER3 215 - 37 105 223900 14 3 24 30 chain 2984 chr6 171115067 + 155214237 155214270 MER53 195 + 73 106 225358 33 chain 3273 chr6 171115067 + 155225227 155225277 MADE1 96 + 30 96 219502 12 1 17 37 chain 23117 chr6 171115067 + 155259749 155260028 AluSp 311 - 24 303 115051 279 chain 14490 chr6 171115067 + 155268399 155268739 L1M1 2793 - 745 1085 142913 95 48 40 83 72 76 11 5 9 26 chain 146202 chr6 171115067 + 155286732 155288560 SVA_D 2077 - 6 2077 25130 7 8 0 624 1 0 30 15 14 7 0 1 27 4 5 9 0 2 30 0 1 27 0 37 13 7 57 20 0 269 246 116 0 615 0 8 22 chain 2248 chr6 171115067 + 155287807 155287831 SVA_D 2077 - 1588 1612 208356 24 chain 2025 chr6 171115067 + 155287858 155287898 SVA_D 2077 - 1523 1563 174186 40 chain 12572 chr6 171115067 + 155309876 155310055 L1PA5 6144 - 15 193 149951 49 1 0 77 7 0 12 4 11 29 chain 22060 chr6 171115067 + 155321394 155321682 AluSp 311 + 8 301 119965 43 0 2 35 0 1 43 1 0 4 1 2 137 4 6 20 chain 3598 chr6 171115067 + 155329753 155329795 MER66B 489 - 152 194 213690 42 chain 2816 chr6 171115067 + 155330129 155330175 MER5A 189 - 0 48 228513 17 4 6 25 chain 24369 chr6 171115067 + 155331599 155331883 AluSp 311 - 22 310 108267 206 0 4 78 chain 23529 chr6 171115067 + 155381264 155381542 AluSp 311 + 8 288 112967 6 0 1 122 0 1 150 chain 24370 chr6 171115067 + 155409186 155409514 AluSp 311 - 9 311 108258 73 1 2 96 2 0 27 25 0 104 chain 23921 chr6 171115067 + 155413721 155414000 AluSp 311 + 14 293 110801 279 chain 23524 chr6 171115067 + 155445465 155445754 AluSp 311 - 16 301 112991 9 3 0 233 1 0 43 chain 33186 chr6 171115067 + 155459570 155459977 L1PA6 6164 - 2 405 78923 45 4 0 100 15 15 243 chain 23244 chr6 171115067 + 155499037 155499322 AluY 311 + 11 308 114466 41 0 13 67 0 1 152 2 0 23 chain 17312 chr6 171115067 + 155541907 155542130 L1PA7 6471 - 7 230 134751 152 6 5 40 0 1 25 chain 108160 chr6 171115067 + 155558054 155559547 THE1B-int 1605 - 6 1537 34668 458 42 50 71 0 1 150 1 0 136 45 45 49 1 4 172 13 38 81 0 2 274 chain 29973 chr6 171115067 + 155586916 155587321 MLT2A1 477 - 79 477 84896 13 6 2 106 1 0 42 1 0 30 0 1 19 3 4 11 4 1 169 chain 30765 chr6 171115067 + 155589766 155590099 SVA_C 1631 + 1298 1631 82924 333 chain 11012 chr6 171115067 + 155628846 155629018 MER30 238 - 10 228 156160 61 0 6 22 1 0 9 3 22 53 4 26 19 chain 3595 chr6 171115067 + 155645187 155645235 MER112 246 - 8 55 213743 12 1 0 35 chain 317257 chr6 171115067 + 155656244 155660926 L1PB1 5432 - 8 4437 12714 4 1 0 16 1 0 13 1 0 21 1 0 19 28 24 19 18 8 5 1 0 15 1 0 39 11 10 9 3 2 53 2 0 6 20 15 12 1 0 20 3 0 9 1 2 51 1 0 5 2 10 98 12 8 274 0 6 24 3 0 129 13 18 77 0 11 660 1 0 468 0 1 196 0 3 143 324 14 65 2 1 34 0 19 24 0 1 133 26 48 81 2 1 492 23 35 33 7 6 64 0 1 201 0 3 59 1 6 13 4 11 115 0 6 52 15 1 7 1 0 114 2 1 81 4 3 53 0 8 140 chain 62835 chr6 171115067 + 155666723 155668174 L1PREC2 3366 - 320 3217 51521 36 6 4 29 28 14 11 37 31 14 52 40 13 3 0 4 1 0 44 1 0 54 3 1 40 3 0 328 1 0 48 15 13 29 305 1824 92 1 0 81 23 12 26 4 1 10 1 0 14 1 0 24 15 9 20 2 0 10 1 0 21 chain 106613 chr6 171115067 + 155676584 155677806 L1PA4 6152 + 4463 6152 35090 171 1 7 13 0 1 4 1 0 30 0 460 765 0 1 237 chain 126095 chr6 171115067 + 155684008 155685535 LTR12C 1709 + 0 1631 29064 37 0 4 204 17 0 219 13 11 245 0 118 274 1 0 4 6 4 104 0 4 403 chain 14829 chr6 171115067 + 155697345 155697568 MER30 238 + 0 238 141846 107 4 19 21 7 10 42 3 0 39 chain 27794 chr6 171115067 + 155714600 155714912 L1PA5 6144 - 6 318 93718 312 chain 15745 chr6 171115067 + 155775032 155775239 Tigger1a_Art 216 - 0 209 139126 167 1 3 39 chain 122286 chr6 171115067 + 155788714 155790293 THE1A-int 1579 - 0 1579 30284 163 0 1 80 3 0 37 0 1 379 0 1 124 2 1 144 0 8 9 8 0 342 2 1 15 0 2 271 chain 29166 chr6 171115067 + 155790293 155790647 THE1A 353 - 0 353 88220 243 1 0 110 chain 30456 chr6 171115067 + 155823153 155823493 L1PA3long 6157 + 5817 6157 83524 340 chain 5307 chr6 171115067 + 155875025 155875113 L1MC5 759 - 442 531 191939 15 14 15 59 chain 23141 chr6 171115067 + 155884469 155884812 THE1B 368 - 12 368 114933 23 21 31 106 1 0 22 3 2 84 6 11 77 chain 316376 chr6 171115067 + 155888486 155893101 L1PB1 5432 - 37 4654 12748 4 1 0 21 1 0 24 2 0 14 1 0 5 5 3 15 31 19 10 1 0 43 1 0 16 2 1 52 18 12 12 1 0 10 1 0 19 11 0 12 2 0 70 0 1 216 0 4 6 3 1 6 0 1 149 6 5 13 0 2 51 1 0 4 7 8 89 1 5 740 2 0 6 8 13 324 0 1 5 1 0 6 13 13 307 4 14 27 2 0 96 0 9 69 1 0 306 12 13 23 0 1 118 38 69 18 1 2 21 0 1 139 19 18 48 32 1 20 6 12 250 2 0 62 26 24 286 24 23 289 0 11 87 21 22 135 1 2 63 chain 25631 chr6 171115067 + 155897662 155898026 THE1C 375 + 2 363 101578 107 1 2 14 9 6 52 12 12 154 1 0 14 chain 22059 chr6 171115067 + 155904253 155904518 AluSp 311 - 35 300 119969 265 chain 11533 chr6 171115067 + 155912297 155912592 L1MA4 2864 - 60 326 154172 31 131 103 26 2 1 105 chain 34491 chr6 171115067 + 155924839 155925350 MLT2A1 477 - 0 477 76923 56 22 0 19 32 9 7 0 7 56 1 0 149 4 8 27 0 1 138 chain 69126 chr6 171115067 + 155925350 155926211 HERVL-int 5654 - 0 869 48750 86 5 10 127 0 1 192 21 22 89 0 1 341 chain 20740 chr6 171115067 + 155927671 155928048 THE1D 372 - 0 372 124819 130 66 76 18 1 4 42 1 2 23 20 1 76 chain 3844 chr6 171115067 + 155945502 155945544 MER4C 627 - 585 627 209727 42 chain 36782 chr6 171115067 + 155988953 155989495 MLT2A2 560 + 1 560 73825 167 72 71 114 0 7 42 0 11 147 chain 36086 chr6 171115067 + 155994891 155995309 L1PA4 6152 + 5731 6143 74777 202 6 0 210 chain 23026 chr6 171115067 + 156024496 156024850 L1PA16 3655 + 2029 2401 115509 143 43 44 30 0 1 32 0 16 106 chain 227149 chr6 171115067 + 156069420 156072330 L1P3 4156 + 0 2961 17479 125 0 2 116 20 19 58 1 0 80 9 0 9 6 5 232 1 0 90 0 2 36 0 4 154 0 1 442 10 9 158 2 0 213 0 1 16 1 2 28 0 62 263 0 2 56 24 0 12 0 12 139 1 3 166 0 4 108 2 1 64 0 4 51 8 0 29 0 1 64 0 2 116 chain 158087 chr6 171115067 + 156072894 156074807 L1PA7 6471 + 4551 6470 23579 122 1 5 307 0 1 630 1 4 640 2 0 47 13 13 150 chain 4779 chr6 171115067 + 156083958 156084034 MADE1 96 + 1 94 197582 41 1 17 9 1 2 24 chain 25668 chr6 171115067 + 156084511 156084899 Tigger2a 444 - 63 444 101411 21 1 0 51 1 0 185 5 20 10 15 3 41 8 0 50 chain 138511 chr6 171115067 + 156094322 156096133 L1PA8 5853 - 0 1829 26392 93 1 0 19 2 1 45 14 13 74 2 0 44 1 0 295 0 11 170 0 3 72 5 3 87 1 0 23 0 2 14 2 0 55 0 1 609 0 8 13 2 4 143 0 2 25 chain 132298 chr6 171115067 + 156110283 156111778 L1PA5 6144 - 14 1510 27563 609 0 2 100 1 0 124 0 4 120 2 0 170 1 0 361 1 0 6 chain 25622 chr6 171115067 + 156119986 156120362 THE1A 353 + 0 353 101611 110 1 0 43 24 1 45 2 0 5 8 10 95 0 1 43 chain 2944 chr6 171115067 + 156144455 156144491 MLT2B2 565 + 529 565 226245 36 chain 3459 chr6 171115067 + 156160817 156160857 MamRep4096 390 - 264 304 216013 40 chain 3756 chr6 171115067 + 156182847 156182886 MER66C 541 - 132 171 211042 39 chain 123944 chr6 171115067 + 156187022 156188452 LTR12C 1709 - 0 1709 29717 481 0 4 106 3 1 5 1 0 104 0 278 730 chain 31448 chr6 171115067 + 156189628 156190029 L1PA8 5853 - 0 394 81733 93 1 0 19 3 2 39 8 7 14 1 0 71 2 0 44 1 0 105 chain 5038 chr6 171115067 + 156190029 156190086 L1PA8 5853 + 5398 5455 194744 57 chain 24160 chr6 171115067 + 156215134 156215485 THE1A 353 - 0 353 109431 101 0 1 4 1 0 60 0 1 48 30 31 107 chain 31962 chr6 171115067 + 156222640 156223091 MLT2A2 560 + 0 560 80918 180 1 0 115 12 121 39 7 8 97 chain 22703 chr6 171115067 + 156298156 156298466 AluSc 308 - 1 308 117060 176 2 0 73 16 15 43 chain 9611 chr6 171115067 + 156304351 156304454 L1PA5 6144 - 12 115 162537 103 chain 97683 chr6 171115067 + 156311706 156312960 L1PA8 5853 - 0 1266 37375 22 0 1 70 1 0 19 2 1 52 1 0 9 9 8 5 0 1 57 2 0 44 1 0 416 0 1 49 4 1 10 2 3 74 2 0 11 1 0 4 10 21 254 0 10 123 chain 206651 chr6 171115067 + 156331460 156333707 L1PA3long 6157 - 0 2247 18742 2247 chain 27294 chr6 171115067 + 156333707 156334036 L1PA3long 6157 + 3592 3900 94011 211 20 0 89 1 0 8 chain 566239 chr6 171115067 + 156355269 156361299 L1HS 6032 + 0 6032 136 74 0 1 1034 0 1 4922 chain 50244 chr6 171115067 + 156364770 156365346 L1PA4 6152 + 5570 6152 58833 7 0 1 563 0 5 6 chain 4398 chr6 171115067 + 156400174 156400253 MADE1 96 - 0 96 201955 18 5 6 13 1 17 42 chain 5252 chr6 171115067 + 156441932 156442038 L1ME2z 1083 + 390 489 192497 24 34 27 48 chain 5350 chr6 171115067 + 156448194 156448283 MER20 218 + 20 97 191537 10 11 0 58 1 0 9 chain 6679 chr6 171115067 + 156463843 156463924 MLT1A0 366 + 217 299 179838 26 0 1 55 chain 26880 chr6 171115067 + 156472608 156472921 AluY 311 + 0 309 96697 123 3 0 8 1 0 178 chain 22056 chr6 171115067 + 156475303 156475569 AluY 311 + 29 301 119990 103 0 1 36 1 6 126 chain 4537 chr6 171115067 + 156483059 156483146 MLT1C 463 + 67 161 200367 51 21 28 15 chain 128899 chr6 171115067 + 156546338 156548639 L1MA2 4263 + 2129 4114 28334 339 1 4 9 0 1 17 0 3 31 2 0 6 2 0 19 0 5 81 6 5 26 5 0 11 10 25 29 15 16 16 6 10 76 0 1 52 0 1 16 33 15 34 0 3 152 0 1 236 8 9 178 0 1 17 3 0 10 6 2 4 1 0 72 1 0 108 16 26 5 0 2 5 3 0 123 361 41 86 14 7 40 1 0 9 chain 54383 chr6 171115067 + 156557808 156558523 L1PREC2 3366 - 1057 1770 56110 257 0 4 232 2 1 5 0 1 26 10 4 183 chain 25770 chr6 171115067 + 156573845 156574248 L1PB4 2604 - 140 549 101010 81 38 44 138 1 0 75 12 13 58 chain 3669 chr6 171115067 + 156593995 156594051 MER96B 391 - 101 157 212429 17 2 0 7 0 2 30 chain 25145 chr6 171115067 + 156598852 156599199 THE1B 368 + 13 368 104032 95 13 13 51 3 2 100 0 1 31 5 13 49 chain 11372 chr6 171115067 + 156601610 156601764 L1PA8 5853 + 5701 5853 154808 39 2 1 19 1 0 93 chain 563431 chr6 171115067 + 156646114 156652144 L1HS 6032 - 2 6032 256 6030 chain 83413 chr6 171115067 + 156676052 156676982 L1PA3long 6157 - 13 942 42151 134 0 1 111 1 0 590 2 1 92 chain 3086 chr6 171115067 + 156682270 156682358 MSTD 398 - 3 89 223161 12 6 5 25 27 26 18 chain 554270 chr6 171115067 + 156682400 156688410 L1PA2 6032 + 15 6032 912 692 0 7 5318 chain 10565 chr6 171115067 + 156754277 156754399 L1PA5 6144 - 17 139 157973 122 chain 3443 chr6 171115067 + 156767480 156767549 MIR 256 - 73 143 216302 31 21 22 17 chain 7924 chr6 171115067 + 156797531 156797787 MLT1A1 405 + 70 363 171493 39 116 154 14 21 20 66 chain 16955 chr6 171115067 + 156798874 156799131 L1PA8 5853 + 5601 5853 135711 7 2 0 71 1 0 57 9 8 16 21 20 73 chain 160879 chr6 171115067 + 156803009 156804768 L1PA3long 6157 + 4394 6157 23216 894 0 4 865 chain 14907 chr6 171115067 + 156807007 156807176 L1PA4 6152 - 11 180 141614 169 chain 117603 chr6 171115067 + 156811143 156812655 THE1C-int 1605 + 16 1593 31924 94 0 54 281 9 16 13 1 0 42 3 2 114 0 3 42 1 0 475 1 2 15 0 1 254 0 1 99 0 1 68 chain 11814 chr6 171115067 + 156842615 156842747 L1PA3long 6157 - 0 133 152970 7 0 1 125 chain 12063 chr6 171115067 + 156843682 156843830 THE1D 372 + 224 372 151928 148 chain 3422 chr6 171115067 + 156845410 156845449 MADE1 96 + 57 96 216725 39 chain 13527 chr6 171115067 + 156861442 156861613 L1PA6 6164 - 4 175 146255 171 chain 7410 chr6 171115067 + 156865370 156865531 L1MB3 1562 - 107 241 174702 17 50 24 62 2 1 30 chain 3825 chr6 171115067 + 156870034 156870077 UCON12A 93 + 14 57 210008 43 chain 71952 chr6 171115067 + 156905054 156906113 L1MA3 4352 + 3221 4277 47497 371 0 1 337 3 7 89 0 4 60 98 89 23 9 8 43 8 6 18 chain 542551 chr6 171115067 + 156925838 156931959 L1PA4 6152 + 6 6138 2414 361 0 1 1959 0 1 191 0 1 247 0 2 499 0 3 222 0 4 2196 1 0 445 chain 25221 chr6 171115067 + 156934059 156934429 THE1D 372 - 0 372 103635 28 2 0 4 1 0 112 17 18 21 7 11 178 chain 23587 chr6 171115067 + 156941036 156941395 THE1B 368 - 0 368 112647 115 45 55 24 1 0 174 chain 524184 chr6 171115067 + 156984646 156992696 L1PA6 6164 + 0 6162 4750 161 35 38 697 7 11 386 1 4 425 1 0 611 0 1 736 0 1 235 324 0 298 12 0 99 3 0 1593 0 4 12 0 4 131 0 8 328 1575 0 375 1 0 4 chain 132885 chr6 171115067 + 156990798 156992313 SVA_D 2077 + 63 2076 27448 401 0 156 300 1 38 76 2 4 25 0 1 42 1 304 34 1 0 632 chain 22247 chr6 171115067 + 157156086 157156395 AluY 311 + 0 304 119130 77 5 1 40 2 0 23 0 1 29 15 15 118 chain 12049 chr6 171115067 + 157159711 157159843 L1PA6 6164 + 6017 6149 151987 132 chain 23521 chr6 171115067 + 157217743 157218029 AluSc 308 + 11 297 113010 286 chain 25040 chr6 171115067 + 157227414 157227708 AluSp 311 + 15 311 104594 139 0 2 155 chain 31736 chr6 171115067 + 157296923 157297409 LTR7B 505 - 0 505 81269 64 2 0 30 0 4 70 2 1 24 0 88 24 71 0 4 2 0 102 0 3 91 chain 4719 chr6 171115067 + 157316922 157316981 MER53 195 - 8 67 198293 59 chain 25001 chr6 171115067 + 157334023 157334312 AluSp 311 - 22 311 104772 289 chain 21626 chr6 171115067 + 157360452 157360681 AluYb8 318 - 7 236 121672 229 chain 3247 chr6 171115067 + 157368223 157368265 MADE2 80 - 38 80 220058 42 chain 23882 chr6 171115067 + 157448639 157448940 AluSc8 310 + 16 307 111013 118 3 1 113 8 0 59 chain 5285 chr6 171115067 + 157550748 157550811 MER53 195 + 132 195 192158 63 chain 2497 chr6 171115067 + 157691677 157691742 HAL1-2a_MD 234 + 0 216 233170 21 1 7 13 14 159 16 chain 28952 chr6 171115067 + 157715375 157715681 AluYa5 310 - 4 310 89209 306 chain 212589 chr6 171115067 + 157761910 157764356 L1PA5 6144 + 3696 6142 18321 645 0 4 1250 0 1 539 5 0 7 chain 16156 chr6 171115067 + 157767884 157768115 THE1B 368 - 12 247 137878 37 6 13 114 6 4 15 1 0 52 chain 4539 chr6 171115067 + 157790782 157790840 MER73 639 + 578 639 200340 5 0 3 53 chain 23390 chr6 171115067 + 157842251 157842549 AluYc3 301 + 2 296 113702 111 2 0 8 12 10 165 chain 3288 chr6 171115067 + 157946516 157946623 MLT1F2 592 - 352 457 219243 20 54 52 33 chain 25534 chr6 171115067 + 157949485 157949792 AluY 311 + 4 311 102082 307 chain 28471 chr6 171115067 + 157957851 157958148 AluYa5 310 - 12 309 91302 297 chain 14029 chr6 171115067 + 157988281 157988565 LTR45B 484 - 167 462 144465 40 46 54 24 15 18 10 21 21 128 chain 17765 chr6 171115067 + 157993528 157993723 L1PA4 6152 - 1 196 133530 195 chain 47748 chr6 171115067 + 157998883 157999581 L1PA15 4387 - 367 1066 60657 40 2 4 44 1 0 25 1 0 12 6 4 67 15 11 109 14 16 67 0 1 109 6 7 89 2 5 89 chain 77364 chr6 171115067 + 158000001 158002927 L1PREC2 3366 - 535 3100 44793 25 1 0 54 2 0 40 6 8 90 1632 1279 17 5 8 50 22 19 37 9 10 243 0 1 9 1 0 23 76 78 114 10 8 56 6 10 110 2 3 68 2 1 54 1 0 15 2 0 106 15 6 23 chain 21171 chr6 171115067 + 158005958 158006245 AluSq2 311 + 4 290 123306 130 31 30 126 chain 28805 chr6 171115067 + 158010433 158010779 THE1C 375 + 0 375 89870 157 1 30 188 chain 113117 chr6 171115067 + 158010796 158012305 THE1C-int 1605 + 18 1605 33345 98 1 55 188 0 1 17 0 7 26 0 1 33 10 17 242 0 1 20 11 20 263 13 0 143 0 1 39 5 6 29 2 1 148 9 8 91 0 11 121 chain 23495 chr6 171115067 + 158027222 158027519 AluSq2 311 + 8 305 113148 82 1 0 43 0 1 171 chain 31724 chr6 171115067 + 158119401 158120693 MER4D1 891 - 43 570 81287 115 15 5 25 20 17 14 35 23 36 745 0 59 3 4 101 11 15 113 chain 39359 chr6 171115067 + 158121673 158122124 LTR7 482 - 0 482 70236 190 0 31 261 chain 294477 chr6 171115067 + 158123382 158127115 HERVH-int 3825 - 1 3825 13734 224 0 2 260 8 218 39 9 11 481 0 1 4 1 0 437 0 4 46 0 5 312 0 1 303 2 1 45 9 0 566 2 1 80 5 4 50 1 0 5 0 1 6 22 0 20 2 1 10 2 0 30 1 0 25 11 39 12 122 0 10 1 0 40 1 0 522 0 1 7 chain 3148 chr6 171115067 + 158126424 158126471 HERVH-int 3825 - 3255 3301 221988 24 0 1 6 1 0 6 1 0 9 chain 35142 chr6 171115067 + 158127117 158127614 LTR7 482 - 0 482 76004 189 0 31 52 0 5 90 17 16 13 50 0 86 chain 45681 chr6 171115067 + 158130761 158131314 MER41A 554 + 0 554 62332 427 0 1 126 chain 214064 chr6 171115067 + 158157180 158159664 L1PA7 6471 - 1493 3998 18223 229 0 1 400 3 7 501 6 4 230 0 1 512 1 17 72 1 0 280 0 2 249 chain 125255 chr6 171115067 + 158159678 158161125 L1PA7 6471 + 5007 6454 29309 382 0 2 230 1 0 683 1 0 150 chain 25897 chr6 171115067 + 158172088 158172442 THE1A 353 - 0 353 100454 98 0 1 160 1 0 39 12 13 29 2 0 13 chain 79469 chr6 171115067 + 158173245 158174213 LTR5_Hs 974 - 0 974 43841 299 0 1 14 0 1 196 0 4 459 chain 45156 chr6 171115067 + 158175790 158176342 MER41A 554 - 0 554 62866 126 0 1 90 4 6 290 2 1 40 chain 5481 chr6 171115067 + 158180382 158180443 MER63B 433 + 46 107 190214 61 chain 5333 chr6 171115067 + 158201594 158201728 MER53 195 + 41 167 191702 43 53 45 38 chain 29008 chr6 171115067 + 158220571 158220926 THE1A 353 - 0 353 88945 243 2 0 110 chain 31058 chr6 171115067 + 158236709 158237069 L1PA7 6471 + 6099 6470 82422 234 0 11 126 chain 33372 chr6 171115067 + 158239059 158239544 MLT2A1 477 - 0 477 78614 26 1 0 20 52 48 213 4 1 169 chain 23940 chr6 171115067 + 158245993 158246290 AluSx 319 + 0 293 110689 20 5 1 272 chain 25335 chr6 171115067 + 158247250 158247550 AluY 311 + 0 301 103046 13 0 2 118 1 0 168 chain 20318 chr6 171115067 + 158292476 158292711 L1PA6 6164 + 5921 6156 126182 235 chain 22937 chr6 171115067 + 158320538 158320815 AluY 311 + 16 292 115917 109 2 1 166 chain 75462 chr6 171115067 + 158321438 158322310 MER11D 897 - 0 897 45787 287 1 24 294 4 6 286 chain 10560 chr6 171115067 + 158325616 158325747 AluSc 308 + 154 286 157993 50 1 2 80 chain 20771 chr6 171115067 + 158338602 158338918 MER2 342 - 9 329 124711 15 1 2 210 25 29 9 1 0 55 chain 14302 chr6 171115067 + 158351526 158351819 MER1B 344 + 61 339 143555 15 44 19 73 27 36 64 16 17 54 chain 147372 chr6 171115067 + 158370042 158372245 L1MA2 4263 + 1861 4114 24984 25 0 3 81 1 0 145 18 9 46 0 3 61 0 5 6 20 10 57 1 0 44 0 12 13 24 50 12 0 4 64 0 1 6 31 25 10 0 4 87 4 0 6 7 8 92 1 3 16 0 1 121 7 15 73 1 13 113 11 14 43 0 2 12 0 4 397 9 4 4 0 1 38 5 8 30 2 1 85 5 9 49 3 0 152 9 7 93 7 0 11 0 1 35 1 0 9 chain 8836 chr6 171115067 + 158389058 158389209 L1PA8 5853 - 0 149 166460 93 1 0 19 26 25 12 chain 60900 chr6 171115067 + 158413772 158414700 L1MA2 4263 - 150 971 52385 9 1 0 39 16 9 91 3 2 5 1 0 124 87 0 32 3 0 139 2 1 76 7 2 18 1 0 274 chain 47047 chr6 171115067 + 158425180 158425805 MER41B 635 + 0 635 61169 127 1 2 246 1 0 23 5 10 139 1 6 82 chain 4627 chr6 171115067 + 158437469 158437524 L1MB8 1703 - 187 242 199332 55 chain 50126 chr6 171115067 + 158456101 158456840 L1PA13 3608 - 126 891 58924 14 1 0 18 10 6 48 2 0 5 1 0 55 1 0 63 2 0 46 0 4 63 6 5 25 10 9 56 0 25 117 0 1 56 22 16 44 7 22 67 chain 69839 chr6 171115067 + 158548299 158549049 SVA_F 1814 + 1017 1814 48460 121 1 49 617 1 0 10 chain 43938 chr6 171115067 + 158597646 158598166 MER9a3 513 - 0 513 64282 201 8 1 311 chain 478897 chr6 171115067 + 158598619 158605065 L1PA7 6471 - 15 6466 7768 140 2 0 6 0 3 434 0 10 18 290 0 205 0 1 4 1 0 14 2 1 77 0 3 161 6 9 547 1 5 43 0 3 24 1 0 166 0 3 267 10 3 80 29 0 17 0 2 252 0 2 225 0 1 67 0 2 27 4 5 51 0 1 74 8 0 17 1 2 98 0 1 233 1 2 482 2 0 36 2 0 111 0 2 991 0 1 460 0 21 179 0 75 56 5 15 121 73 271 118 11 10 196 chain 24857 chr6 171115067 + 158614744 158615041 AluY 311 + 0 303 105584 90 0 5 31 0 1 176 chain 126082 chr6 171115067 + 158629867 158631383 LTR12C 1709 - 0 1709 29070 386 0 2 92 1 5 106 3 1 5 1 0 43 1 111 104 0 118 118 1 0 144 37 0 474 chain 3798 chr6 171115067 + 158656700 158656743 L1MB3 1562 - 308 351 210417 43 chain 152314 chr6 171115067 + 158659453 158662628 SVA_F 1814 - 0 1678 24300 10 2 0 654 128 0 139 1 0 11 1 0 38 0 15 61 1383 0 469 0 2 229 0 1 49 chain 9880 chr6 171115067 + 158660119 158660247 SVA_F 1814 - 713 904 101268 107 1 64 20 chain 15272 chr6 171115067 + 158660498 158660663 SVA_F 1814 - 688 851 114066 115 1 0 10 1 0 38 chain 3887 chr6 171115067 + 158660663 158660704 SVA_F 1814 - 675 716 138304 41 chain 24524 chr6 171115067 + 158660704 158661107 SVA_F 1814 - 540 843 77883 237 100 0 66 chain 1354 chr6 171115067 + 158660991 158661041 SVA_F 1814 - 600 650 118657 50 chain 35283 chr6 171115067 + 158661107 158661802 SVA_F 1814 - 540 947 75816 312 298 10 22 1 0 49 0 1 13 chain 11872 chr6 171115067 + 158661419 158661546 SVA_F 1814 - 725 852 130416 127 chain 910 chr6 171115067 + 158661579 158661673 SVA_F 1814 - 708 802 151630 94 chain 3446 chr6 171115067 + 158661677 158661717 SVA_F 1814 - 631 671 186607 40 chain 3154 chr6 171115067 + 158661817 158661852 SVA_F 1814 - 672 707 162394 35 chain 3313 chr6 171115067 + 158665914 158665952 MLT1A 405 + 334 372 218721 38 chain 84198 chr6 171115067 + 158717306 158719500 MER11A 1151 - 0 1151 41823 40 0 4 123 0 1 62 0 1 36 18 0 22 8 41 21 317 0 51 0 4 55 6 8 130 1 0 63 1 0 100 0 1 94 8 5 196 749 0 93 chain 19235 chr6 171115067 + 158717644 158717883 MER11A 1151 - 0 248 129424 66 1 0 90 0 1 67 0 9 15 chain 888 chr6 171115067 + 158717903 158717928 MER11A 1151 - 267 292 55851 25 chain 6401 chr6 171115067 + 158718666 158718743 MER11A 1151 - 1074 1151 182019 77 chain 22597 chr6 171115067 + 158718756 158719392 MER11A 1151 - 316 952 55851 159 0 1 116 1 0 265 4 0 63 0 4 28 chain 83752 chr6 171115067 + 158720037 158721365 HERVK11-int 2540 - 302 1553 42012 116 23 18 81 1 0 12 2 0 105 2 0 71 1 0 104 17 12 171 2 0 134 11 13 111 17 1 34 13 2 23 32 21 15 36 32 33 1 0 64 2 0 21 59 43 14 chain 19091 chr6 171115067 + 158724289 158724596 MER11A 1151 - 40 365 129842 39 5 6 82 0 1 62 0 1 31 24 6 17 12 45 35 chain 170933 chr6 171115067 + 158729034 158730974 SVA_D 2077 - 0 2077 21952 595 0 98 341 7 9 80 1 38 74 40 0 208 0 40 415 0 2 164 2 0 13 chain 19848 chr6 171115067 + 158731124 158731756 MSTB 430 - 1 423 127658 11 0 2 17 0 1 90 1 6 41 307 74 15 33 47 22 0 1 95 chain 82222 chr6 171115067 + 158738228 158739157 L1PA6 6164 - 27 965 42671 463 0 9 466 chain 31475 chr6 171115067 + 158764916 158765373 LTR7B 505 + 0 496 81683 108 0 10 57 0 38 12 3 27 28 29 0 82 1 0 79 14 13 26 2 0 16 chain 72952 chr6 171115067 + 158766422 158767434 MER11A 1151 - 0 1151 47044 60 7 6 9 0 6 102 0 1 77 24 55 88 0 4 53 5 6 132 1 0 5 12 13 89 4 5 144 10 7 135 0 99 55 chain 158001 chr6 171115067 + 158769207 158771758 SVA_A 1864 - 0 1846 23594 655 3 1 64 1 0 9 41 0 231 3 0 17 1 0 75 390 0 113 3 0 93 263 0 17 4 1 9 0 2 559 chain 2067 chr6 171115067 + 158769941 158769978 SVA_A 1864 - 729 766 56117 37 chain 21792 chr6 171115067 + 158770307 158770697 SVA_A 1864 - 1015 1239 56117 7 42 1 78 1 0 71 48 6 33 2 0 27 80 0 1 chain 2048 chr6 171115067 + 158770519 158770548 SVA_A 1864 - 1295 1324 165375 29 chain 3135 chr6 171115067 + 158770634 158770696 SVA_A 1864 - 1292 1354 107667 62 chain 3186 chr6 171115067 + 158770974 158771078 SVA_A 1864 - 841 945 78197 104 chain 971 chr6 171115067 + 158771109 158771152 SVA_A 1864 - 901 944 98165 43 chain 24829 chr6 171115067 + 158813039 158813411 THE1B 368 - 0 368 105731 27 5 1 36 0 2 102 2 0 24 5 4 76 16 2 35 0 15 44 chain 4328 chr6 171115067 + 158816180 158816234 MSTC 436 - 382 436 202851 54 chain 10105 chr6 171115067 + 158818498 158818701 MER30 238 + 54 238 160069 40 15 32 32 45 10 4 1 0 66 chain 6754 chr6 171115067 + 158836692 158836794 Tigger3b 1229 + 317 420 179301 11 7 0 14 5 13 65 chain 42227 chr6 171115067 + 158836817 158837367 MLT2A2 560 - 7 560 66365 286 0 1 57 19 21 127 0 1 35 1 0 25 chain 50373 chr6 171115067 + 158841931 158842957 MER4E1 777 - 18 756 58733 123 1 0 47 308 0 38 12 15 11 0 1 148 1 0 25 0 1 4 15 33 148 2 1 4 0 5 61 5 0 73 chain 43380 chr6 171115067 + 158847408 158848123 L1PREC2 3366 - 330 1004 64957 23 9 7 34 23 9 11 4 1 29 3 1 15 11 6 12 29 21 4 0 1 8 3 0 4 1 0 44 1 0 49 7 5 41 1 0 349 chain 25196 chr6 171115067 + 158874225 158874541 AluY 311 + 8 308 103756 119 16 0 181 chain 30043 chr6 171115067 + 158876087 158876405 AluYb8 318 - 0 318 84665 318 chain 13639 chr6 171115067 + 158884494 158884682 L1PA5 6144 + 5950 6138 145818 31 17 17 14 1 0 30 0 1 95 chain 20881 chr6 171115067 + 158885121 158885507 MER4D 903 - 14 383 124353 95 22 17 69 28 26 13 16 16 32 14 3 69 0 1 28 chain 65237 chr6 171115067 + 158890901 158891671 LTR17 781 - 9 781 50448 444 0 1 18 10 0 30 0 2 149 1 10 118 chain 4122 chr6 171115067 + 158895712 158895914 Tigger4a 237 - 0 72 205632 45 124 0 12 3 0 4 3 0 11 chain 4104 chr6 171115067 + 158938664 158938710 MER39 703 + 543 589 205881 46 chain 88501 chr6 171115067 + 158947302 158948452 L1PA10 4194 + 2985 4159 40184 69 1 0 4 7 9 61 10 9 191 0 2 145 0 3 135 0 7 142 1 0 58 0 10 71 0 3 30 0 1 67 0 3 111 3 0 34 1 0 9 chain 3331 chr6 171115067 + 158974841 158974879 MER6B 211 - 11 49 218378 38 chain 3845 chr6 171115067 + 158978071 158978117 MER65A 464 - 418 464 209720 46 chain 6154 chr6 171115067 + 159000320 159000471 L1MB3 1562 + 1125 1275 183946 42 55 51 30 1 4 23 chain 22001 chr6 171115067 + 159001085 159001344 AluSp 311 + 5 264 120224 259 chain 26871 chr6 171115067 + 159017653 159018005 THE1A 353 - 0 353 96740 178 0 1 62 6 5 24 0 1 82 chain 426907 chr6 171115067 + 159035532 159040547 L1PA5 6144 - 12 5016 9374 245 9 8 603 1 5 564 1 2 1032 0 3 6 1 0 408 0 5 30 0 4 47 1 0 6 2 0 852 23 9 301 0 1 66 1 0 16 0 1 112 0 2 238 3 0 395 10 1 42 chain 26410 chr6 171115067 + 159064506 159064812 AluSp 311 - 7 311 98372 17 2 0 287 chain 23130 chr6 171115067 + 159079674 159079968 AluSq2 311 + 0 291 114997 134 3 0 157 chain 143184 chr6 171115067 + 159096982 159098573 L1PA4 6152 + 4523 6132 25621 55 0 12 1324 1 0 81 0 7 130 chain 25951 chr6 171115067 + 159113025 159113318 AluY 311 + 18 311 100198 293 chain 45479 chr6 171115067 + 159132569 159133110 MER41A 554 - 0 554 62516 12 0 12 102 0 1 427 chain 41930 chr6 171115067 + 159150926 159151507 LTR10E 629 + 38 629 66719 14 0 1 34 0 4 71 4 6 107 0 3 18 5 4 70 7 11 187 2 0 55 1 0 6 chain 21331 chr6 171115067 + 159154025 159155211 LTR10E 629 + 0 568 122753 18 30 37 4 0 1 104 4 6 64 4 5 57 2 1 36 803 177 34 4 3 4 1 0 17 chain 3166 chr6 171115067 + 159155223 159155257 LTR10E 629 + 589 623 221634 34 chain 22409 chr6 171115067 + 159161799 159162095 HSMAR1 1287 - 28 330 118449 54 0 1 4 1 0 128 0 6 109 chain 9707 chr6 171115067 + 159180873 159181033 MER30 238 + 50 238 162050 43 3 7 7 4 0 10 1 21 14 0 6 38 0 3 34 1 0 5 chain 28034 chr6 171115067 + 159225798 159226097 L1PA2 6032 - 4 303 92875 299 chain 23931 chr6 171115067 + 159263420 159263714 AluY 311 + 12 298 110743 120 7 0 150 1 0 16 chain 23655 chr6 171115067 + 159281914 159282213 AluSp 311 - 13 306 112282 166 2 0 104 5 1 22 chain 30536 chr6 171115067 + 159289012 159289400 LTR12F 595 + 0 584 83362 72 0 191 60 1 0 41 0 1 77 0 5 137 chain 8910 chr6 171115067 + 159292514 159292631 MER30 238 + 94 234 166086 24 0 20 52 0 3 41 chain 28207 chr6 171115067 + 159301422 159301841 LTR7B 505 - 13 505 92279 38 14 13 79 1 0 43 0 1 8 0 88 27 35 11 69 0 10 105 chain 50873 chr6 171115067 + 159305915 159306553 HERVH-int 3825 - 0 639 58384 458 5 6 62 0 1 27 29 28 57 chain 31048 chr6 171115067 + 159309796 159310247 LTR7B 505 - 13 505 82440 38 14 13 79 1 0 82 29 0 28 6 68 69 0 10 105 chain 23981 chr6 171115067 + 159314593 159314869 AluSp 311 - 24 300 110438 276 chain 43855 chr6 171115067 + 159319144 159321146 L1M1 2793 - 409 1502 64379 87 0 4 162 6 11 13 1344 436 82 0 4 20 24 0 12 0 1 116 9 14 95 0 4 32 chain 186061 chr6 171115067 + 159371350 159373580 L1PA7 6471 + 4213 6468 20410 456 0 8 71 0 1 250 0 11 68 1 2 534 0 3 650 18 17 24 18 19 124 0 1 16 chain 31272 chr6 171115067 + 159410828 159411270 MLT2A1 477 + 0 477 82039 70 1 3 95 5 2 9 0 1 23 0 1 181 4 0 14 11 45 23 0 4 6 chain 25063 chr6 171115067 + 159419211 159419525 AluY 311 + 10 307 104491 113 2 0 10 17 2 172 chain 3407 chr6 171115067 + 159452509 159452546 MER45A 178 - 0 37 216969 37 chain 15737 chr6 171115067 + 159502791 159503083 L1PB1 5432 - 11 273 139151 13 8 7 9 1 0 22 1 0 26 2 0 12 1 0 5 2 0 19 25 8 4 1 0 16 1 0 6 0 1 37 1 0 14 1 0 54 2 0 9 chain 29077 chr6 171115067 + 159527776 159528193 MER51E 476 + 0 476 88660 137 0 35 146 4 0 49 24 52 57 chain 24881 chr6 171115067 + 159544857 159545215 THE1B 368 - 0 368 105454 123 19 31 12 0 1 5 3 0 86 4 5 84 1 0 21 chain 13104 chr6 171115067 + 159561260 159561422 MER5A 189 - 0 162 147829 162 chain 19146 chr6 171115067 + 159564927 159565285 THE1C 375 - 7 375 129690 18 1 0 101 1 2 34 29 27 5 0 2 40 14 18 35 15 16 17 3 9 14 1 0 30 chain 40056 chr6 171115067 + 159569552 159570069 MLT2A2 560 + 0 560 69240 307 0 32 60 3 14 147 chain 31229 chr6 171115067 + 159636603 159637347 MLT2A1 477 - 8 477 82111 29 13 49 6 4 0 84 4 3 4 0 1 89 0 1 20 0 1 11 3 0 117 306 0 54 chain 13088 chr6 171115067 + 159648747 159648934 MER30 238 - 0 201 147892 100 2 0 8 14 30 63 chain 28971 chr6 171115067 + 159652125 159652427 AluYb8 318 + 0 302 89130 302 chain 20229 chr6 171115067 + 159665900 159666294 THE1D 372 - 0 372 126442 32 1 0 101 88 74 82 36 27 39 0 2 15 chain 7526 chr6 171115067 + 159671295 159671398 L1PREC2 3366 - 2291 2402 174007 24 6 14 73 chain 521849 chr6 171115067 + 159705556 159712028 L1PA7 6471 - 17 6471 4976 173 0 1 178 0 1 246 4 5 191 0 1 37 2 1 1382 1 0 6 0 1 60 0 4 7 8 4 69 2 1 236 13 14 79 39 0 271 4 2 322 0 1 237 3 0 273 2 1 103 0 5 21 0 2 34 1 0 415 5 0 784 0 1 105 0 20 215 7 9 14 3 0 5 0 3 12 4 0 6 5 9 254 18 19 6 1 0 404 12 11 193 chain 23583 chr6 171115067 + 159745260 159745542 AluSx4 309 + 5 287 112673 282 chain 12459 chr6 171115067 + 159745546 159745729 HSMAR1 1287 - 1079 1272 150422 43 0 11 8 0 7 14 11 1 18 1 0 21 0 3 67 chain 7192 chr6 171115067 + 159750853 159750934 L1P1 4361 - 310 391 176125 81 chain 67335 chr6 171115067 + 159766646 159767488 L1PA8A 6298 + 5163 6291 49515 4 1 0 321 0 3 76 7 6 51 0 6 231 5 0 86 0 284 60 chain 222213 chr6 171115067 + 159781911 159784378 L1PA5 6144 - 9 2475 17746 842 1 0 1624 chain 378843 chr6 171115067 + 159786788 159792373 HERVL-int 5654 - 951 5654 10795 654 4 0 182 3 0 151 908 0 154 0 8 487 5 6 562 0 3 218 1 2 127 12 8 4 1 0 97 1 0 167 0 1 177 0 1 662 0 4 14 0 1 82 2 19 128 0 1 172 0 1 610 chain 78512 chr6 171115067 + 159787798 159788677 L1PA4 6152 + 5271 6151 44262 241 0 1 638 chain 78356 chr6 171115067 + 159823930 159824788 L1PA3long 6157 + 5301 6157 44345 851 2 0 5 chain 115729 chr6 171115067 + 159827785 159829204 SVA_B 1603 + 0 1471 32549 19 0 32 54 5 6 54 5 8 5 3 0 204 0 1 138 0 40 255 0 40 65 50 0 41 4 0 14 1 0 97 7 0 398 chain 112631 chr6 171115067 + 159874177 159875576 L1PA8 5853 + 4442 5853 33491 370 0 1 180 0 1 6 4 0 9 1 3 41 1 0 4 0 1 504 1 0 47 2 0 69 2 1 8 3 4 49 2 1 19 1 0 52 6 23 18 chain 206761 chr6 171115067 + 159878065 159880367 L1PA4 6152 - 0 2300 18736 5 3 0 1774 7 8 11 0 1 279 1 0 222 chain 3322 chr6 171115067 + 159889220 159889257 tRNA-Thr-ACA 39 + 0 37 218547 37 chain 25709 chr6 171115067 + 159891124 159891524 MSTA 426 - 0 426 101250 109 1 21 56 37 36 54 0 7 12 2 0 23 8 10 98 chain 28757 chr6 171115067 + 159918203 159918682 L1PA15 4387 + 3890 4351 90085 42 1 0 155 0 1 12 6 5 25 1 0 55 1 0 22 4 0 9 1 0 36 29 26 36 3 1 12 6 1 23 chain 27581 chr6 171115067 + 159924749 159925055 AluY 311 + 2 308 94401 121 1 0 9 1 2 174 chain 180537 chr6 171115067 + 159937384 159940207 L1PREC2 3366 - 318 3227 20939 38 72 59 28 8 6 12 10 5 12 65 43 36 4 3 24 73 37 28 1 0 191 1 4 274 0 5 11 4 0 43 8 10 119 0 1 36 0 1 258 1 0 164 5 7 63 0 1 211 5 8 21 3 4 36 14 13 201 10 16 104 2 170 274 2 1 70 17 15 100 1 0 27 1 0 4 1 0 9 1 0 12 1 0 13 38 28 12 2 0 10 1 0 31 chain 243476 chr6 171115067 + 159968244 159970843 L1HS 6032 - 0 2599 16592 2599 chain 29960 chr6 171115067 + 160013111 160013429 AluYb8 318 + 0 318 84936 318 chain 4719 chr6 171115067 + 160035680 160035734 L1PB4 2604 + 2191 2245 198289 54 chain 21879 chr6 171115067 + 160035797 160036091 THE1B 368 - 62 368 120717 63 7 15 14 0 1 4 4 8 32 1 0 169 chain 278192 chr6 171115067 + 160076248 160080035 L1PBa1 4058 + 262 4040 14743 101 1 2 59 24 14 172 13 36 217 1 3 162 1 2 72 1 0 79 0 2 22 6 23 365 0 1 8 5 2 63 1 0 285 0 5 492 0 3 9 41 14 42 14 18 63 0 8 47 0 6 74 0 1 139 0 5 329 5 0 53 8 5 167 4 3 83 0 1 31 10 1 115 1 0 6 14 13 16 1 0 41 2 0 83 0 7 18 3 1 21 2 1 7 13 0 15 2 0 19 2 1 4 1 0 7 3 0 18 22 18 7 1 0 3 1 0 10 2 1 15 1 0 42 chain 70652 chr6 171115067 + 160081483 160082278 SVA_D 2077 + 1236 2077 48085 72 0 49 31 0 1 4 10 8 49 1 0 621 1 0 6 chain 50106 chr6 171115067 + 160083034 160083691 LTR12_ 688 + 0 688 58940 142 3 4 41 1 0 232 12 13 100 3 36 8 3 0 112 chain 16513 chr6 171115067 + 160084691 160085007 L1PB1 5432 + 5105 5391 136881 9 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 5 4 39 1 0 16 3 0 17 9 0 14 10 7 12 2 0 24 1 0 21 chain 541060 chr6 171115067 + 160091646 160097775 L1PA5 6144 + 3 6132 2660 196 0 1 321 4 0 328 0 1 1399 4 0 57 2 0 472 0 2 544 7 9 1963 0 3 84 1 0 698 0 2 49 chain 539566 chr6 171115067 + 160125178 160131293 L1PA5 6144 + 0 6127 2890 921 0 4 521 0 4 1726 1 0 36 1 4 466 1 0 1034 0 4 1214 3 6 158 4 0 29 chain 8292 chr6 171115067 + 160139329 160139440 L1MA5 2750 - 169 279 169450 17 1 0 93 chain 24479 chr6 171115067 + 160187438 160187728 AluSp 311 - 17 307 107660 290 chain 2989 chr6 171115067 + 160190494 160190527 MLT1B 390 + 295 328 225253 33 chain 73198 chr6 171115067 + 160215768 160216727 LTR5_Hs 974 - 0 974 46924 77 0 6 20 20 18 19 8 15 163 1 0 186 0 1 183 0 1 118 1 0 132 0 2 17 0 2 14 chain 6747 chr6 171115067 + 160262551 160262629 LTR12F 595 + 402 480 179345 78 chain 4367 chr6 171115067 + 160266665 160266724 MLT1C 463 + 63 123 202362 42 2 3 15 chain 122276 chr6 171115067 + 160269119 160270994 THE1B-int 1605 + 0 1605 30289 21 0 7 404 11 38 265 360 57 89 1 0 724 chain 23259 chr6 171115067 + 160270994 160271369 THE1B 368 + 0 368 114391 15 2 0 32 0 1 33 1 2 9 1 0 10 13 15 52 31 24 100 1 0 75 chain 3865 chr6 171115067 + 160275422 160275462 AluJb 308 - 87 127 209370 40 chain 42139 chr6 171115067 + 160285041 160285502 L1PA4 6152 - 2 463 66460 461 chain 24776 chr6 171115067 + 160285615 160285920 L1PA7 6471 + 6160 6464 106020 152 4 3 149 chain 3295 chr6 171115067 + 160293277 160293326 MLT1N2 510 + 410 457 219087 42 2 0 5 chain 11436 chr6 171115067 + 160300480 160300650 MSTA 426 - 37 216 154543 17 2 3 52 9 17 90 chain 15328 chr6 171115067 + 160300747 160300915 L1PA4 6152 - 16 184 140397 168 chain 3803 chr6 171115067 + 160341023 160341067 MADE1 96 - 1 45 210346 44 chain 27232 chr6 171115067 + 160411259 160411620 THE1C 375 + 0 375 95489 37 0 5 165 11 21 122 1 0 25 chain 32091 chr6 171115067 + 160442276 160442635 L1PA4 6152 + 5791 6151 80710 26 0 1 333 chain 14843 chr6 171115067 + 160462432 160462620 L1PA8A 6298 + 6098 6289 141801 52 0 2 26 2 3 108 chain 100402 chr6 171115067 + 160473249 160474452 L1PA6 6164 + 4285 6161 36654 81 0 2 425 1 2 192 5 6 197 5 668 144 1 9 12 2 0 138 chain 47490 chr6 171115067 + 160502201 160503180 MER11B 1079 - 0 1079 60849 28 1 0 20 0 1 66 0 1 45 0 1 37 0 1 53 280 290 12 0 1 15 24 12 22 18 17 94 0 5 153 5 8 43 5 96 58 chain 92534 chr6 171115067 + 160503942 160504973 LTR5A 1029 - 0 1029 38807 206 1 0 676 1 0 147 chain 112472 chr6 171115067 + 160534786 160536096 LTR12C 1709 - 0 1709 33544 168 0 102 211 0 4 106 3 1 5 1 0 152 1 281 90 1 16 272 0 1 300 chain 10386 chr6 171115067 + 160585197 160585446 LTR64 526 - 12 275 158759 61 91 109 49 4 0 44 chain 72723 chr6 171115067 + 160585532 160586333 L1PA4 6152 - 1 801 47154 259 1 0 541 chain 65049 chr6 171115067 + 160586333 160587063 L1PA4 6152 + 4603 5334 50509 374 0 1 356 chain 13164 chr6 171115067 + 160604189 160604340 L1PA4 6152 - 4243 4394 146306 151 chain 377435 chr6 171115067 + 160604340 160608566 L1PA4 6152 + 1915 6151 10834 1038 0 1 1613 0 5 791 0 1 425 1 3 209 0 1 149 chain 27090 chr6 171115067 + 160609375 160609720 L1PA4 6152 - 1 344 95970 71 0 22 19 25 1 230 chain 12748 chr6 171115067 + 160616062 160616271 L1MA5A 2387 + 128 325 149262 28 7 0 25 15 12 5 1 0 4 1 0 123 chain 2718 chr6 171115067 + 160629350 160629754 MER4E1 777 + 12 434 61641 5 2 0 8 2 0 57 0 2 122 0 1 126 0 19 82 chain 517228 chr6 171115067 + 160629763 160635878 L1PA6 6164 - 2 6134 5462 8 2 0 174 4 5 79 0 1 82 0 1 496 0 4 120 2 1 19 0 5 653 0 1 809 0 1 120 2 0 393 0 1 4 2 0 151 0 1 693 9 6 940 0 2 131 0 5 1107 0 4 115 chain 2227 chr6 171115067 + 160635923 160636254 MER4E1 777 + 434 759 61641 108 15 9 208 chain 9655 chr6 171115067 + 160646698 160646820 MER57B1 401 + 7 129 162326 122 chain 28675 chr6 171115067 + 160649682 160650075 LTR7 482 + 0 476 90429 101 16 66 57 5 37 46 0 1 168 chain 234655 chr6 171115067 + 160650083 160653389 HERVH-int 3825 + 0 3825 17052 336 0 19 10 239 165 15 5 6 7 0 208 13 1 0 450 15 0 201 9 0 170 1 0 179 0 1 122 0 1 376 13 1 8 0 11 520 0 367 57 52 52 248 0 23 259 chain 26796 chr6 171115067 + 160654957 160655346 LTR7 482 + 0 474 96991 101 15 14 13 1 52 44 0 1 38 11 44 59 0 1 107 chain 146353 chr6 171115067 + 160656535 160658641 MER41-int 2638 + 465 2590 25109 213 2 0 49 0 2 25 3 19 26 24 38 138 9 6 48 0 1 48 2 4 50 1 0 161 9 13 9 1 0 7 2 1 66 6 0 43 0 1 155 1 0 74 1 0 102 11 12 68 11 7 25 2 0 215 60 71 62 0 2 149 14 0 76 1 2 137 chain 40920 chr6 171115067 + 160658698 160659250 MER41A 554 + 2 554 68010 85 5 6 226 1 0 5 7 6 100 5 6 118 chain 4066 chr6 171115067 + 160669349 160669395 MLT1A 405 + 283 329 206388 46 chain 3005 chr6 171115067 + 160680637 160680684 MER21A 919 + 88 147 224956 14 5 17 28 chain 3367 chr6 171115067 + 160693351 160693407 MER89 557 - 500 556 217722 9 2 0 6 2 4 37 chain 301305 chr6 171115067 + 160709304 160712942 HERVH-int 3825 - 1 3825 13357 136 0 2 86 0 2 260 10 220 34 12 14 772 0 1 286 0 4 291 4 31 243 0 1 215 15 0 446 2 1 49 2 1 8 20 0 24 1 0 11 2 0 30 24 0 18 4 21 13 3 1 6 6 0 7 4 0 10 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 333 chain 21561 chr6 171115067 + 160787842 160788106 THE1C-int 1605 - 1337 1605 121921 22 0 5 229 1 0 12 chain 254703 chr6 171115067 + 160792214 160795495 L1PA7 6471 - 1 6469 15999 9 2 0 412 1 0 46 9 10 114 9 15 149 6 5 87 1 4 25 15 2713 8 0 6 135 1 2 60 0 477 243 0 2 195 6 5 296 6 0 54 1 2 737 1 0 44 0 1 209 0 2 304 5 6 91 chain 26093 chr6 171115067 + 160797103 160797551 L1PA8 5853 + 5414 5852 99652 44 0 9 93 5 4 46 2 0 72 1 0 17 85 61 58 0 9 25 chain 34932 chr6 171115067 + 160814322 160814705 L1PA4 6152 - 0 383 76291 383 chain 58563 chr6 171115067 + 160830052 160830676 L1HS 6032 - 0 624 53666 624 chain 30335 chr6 171115067 + 160835530 160835898 THE1C 375 - 0 371 83833 192 0 3 176 chain 105755 chr6 171115067 + 160843863 160845072 L1PA5 6144 - 0 1218 35318 11 3 1 662 3 0 54 0 5 116 0 5 11 0 4 349 chain 86911 chr6 171115067 + 160870730 160871847 MER11A 1151 - 7 1151 40820 22 7 11 37 0 4 149 0 1 35 0 23 26 2 1 153 6 9 377 1 3 14 0 1 79 2 0 21 8 0 178 chain 25809 chr6 171115067 + 160887601 160887901 L1PA4 6152 - 9 316 100831 132 0 1 33 0 1 35 0 3 15 0 2 85 chain 254706 chr6 171115067 + 160922938 160926130 HERVL-int 5654 - 2453 5654 15998 399 0 1 126 0 1 326 1 2 138 1 0 336 0 1 393 0 1 212 1 0 372 1 2 231 6 5 357 0 4 72 0 2 220 chain 370751 chr6 171115067 + 160934421 160939106 L1PA7 6471 + 0 6468 11066 677 12 1801 58 1 2 100 22 7 131 0 4 69 2 1 250 0 4 240 14 15 211 0 3 191 18 19 36 1 6 178 1 3 485 15 16 166 0 4 71 0 1 110 0 6 119 7 8 27 28 1 601 0 3 22 4 8 482 0 1 324 5 0 7 chain 28684 chr6 171115067 + 160948067 160948395 L1PA6 6164 - 2 330 90390 328 chain 98911 chr6 171115067 + 160950049 160951290 L1PA7 6471 + 1481 2719 37048 501 9 11 357 0 1 134 1 0 70 16 18 64 7 0 82 chain 8875 chr6 171115067 + 160951290 160951390 L1PA7 6471 + 5292 5392 165804 100 chain 19318 chr6 171115067 + 160951390 160951623 L1PA7 6471 + 5393 5626 129183 233 chain 37419 chr6 171115067 + 160951623 160952079 L1PA7 6471 + 5629 6086 72940 40 1 0 4 0 1 30 1 2 380 chain 29631 chr6 171115067 + 160952079 160952432 L1PA7 6471 + 6090 6444 86121 266 0 1 87 chain 3892 chr6 171115067 + 160956269 160956417 HAL1-2a_MD 234 - 115 177 208994 9 15 0 23 3 0 15 68 0 15 chain 2574 chr6 171115067 + 160956539 160956667 HAL1-2a_MD 234 - 18 127 231972 15 5 55 19 57 0 5 12 0 15 chain 154747 chr6 171115067 + 160980833 160985403 L1PA7 6471 - 10 4311 10419 142 6 7 482 2 0 126 1 4 165 1 7 29 0 2 133 286 0 273 5 0 84 0 1 74 0 1 200 2 0 55 1 5 183 0 1 644 0 1 351 0 1 590 7 11 257 0 1 60 6 5 348 2 3 55 chain 511010 chr6 171115067 + 160985563 160991678 L1PA5 6144 + 0 6141 6067 120 1 15 114 7 8 144 27 0 608 0 1 159 9 0 65 33 34 165 2 0 255 0 40 585 3 1 1203 2 7 71 0 1 84 1 2 260 1 3 379 36 41 292 0 1 636 2 0 841 4 0 6 chain 24008 chr6 171115067 + 160991678 160992387 L1PA7 6471 - 4313 4998 10419 18 1 0 105 1 0 106 31 0 80 1 2 55 0 3 228 0 1 71 1 5 11 chain 3884 chr6 171115067 + 161074919 161074960 MLT2A2 560 - 0 41 209122 41 chain 317592 chr6 171115067 + 161075541 161079862 HERVL-int 5654 - 0 5654 12693 8 1 0 103 0 1 77 31 0 34 4 0 46 2 1668 286 0 1 53 1 0 110 0 1 1006 3 2 344 9 7 143 8 9 373 0 1 173 0 9 69 308 0 237 0 1 892 chain 185928 chr6 171115067 + 161093432 161096146 L1PREC2 3366 + 136 2854 20418 29 6 5 10 2 0 6 18 23 21 3 2 15 1 0 11 2 0 28 1 0 114 1 0 68 1 0 43 0 4 286 4 3 311 0 4 34 56 57 98 19 19 22 13 11 313 5 6 87 5 6 157 1 0 75 18 19 325 9 10 66 1 4 55 0 2 220 7 6 42 13 11 35 10 9 42 1 0 4 chain 545317 chr6 171115067 + 161100755 161106781 L1PA3long 6157 - 1 6157 2034 373 0 1 804 5 4 1029 0 1 3038 1 129 624 0 1 152 chain 31251 chr6 171115067 + 161116755 161117157 MER83 447 - 43 447 82079 298 0 1 50 18 19 36 chain 202840 chr6 171115067 + 161163823 161166709 L1PREC2 3366 - 318 3157 19007 38 7 4 35 22 8 11 4 0 4 0 1 25 2 0 13 9 4 17 55 34 4 1 0 42 10 9 47 2 0 15 18 17 9 2 1 189 0 1 488 17 18 661 5 0 6 0 3 9 0 3 14 9 8 193 0 4 96 0 1 125 1 2 85 4 3 17 12 15 199 0 4 48 0 1 46 2 1 69 3 0 143 2 0 11 1 0 15 1 0 23 chain 28874 chr6 171115067 + 161181870 161182178 AluYg6 310 + 0 308 89570 308 chain 7239 chr6 171115067 + 161190733 161190901 L1MA5A 2387 + 2168 2306 175843 47 54 25 56 1 0 10 chain 156200 chr6 171115067 + 161198261 161200159 HERVH-int 3825 + 1877 3825 23832 73 0 35 15 0 2 18 0 3 63 4 9 921 1 0 50 0 2 621 0 4 132 chain 11331 chr6 171115067 + 161201709 161201840 LTR7B 505 + 0 131 154957 131 chain 6851 chr6 171115067 + 161207528 161207613 5S 121 - 32 118 178566 25 1 2 59 chain 26295 chr6 171115067 + 161208358 161208808 MER4E 760 + 2 430 98848 16 1 0 133 41 44 28 15 11 30 35 13 92 0 2 59 chain 49015 chr6 171115067 + 161209149 161209730 LTR10C 591 + 3 591 59735 505 0 2 13 6 11 57 chain 25145 chr6 171115067 + 161214785 161215125 MER4A1 472 - 84 472 104035 18 2 0 106 3 40 111 7 20 93 chain 22150 chr6 171115067 + 161216857 161217156 MER41A 554 + 0 304 119592 118 9 10 56 0 4 116 chain 49252 chr6 171115067 + 161220307 161221002 MER41-int 2638 + 1947 2633 59551 23 0 1 4 1 0 52 0 2 5 2 0 191 3 5 46 0 1 167 14 16 48 23 3 6 0 6 110 chain 6499 chr6 171115067 + 161222549 161222638 MER57-int 2662 + 1042 1127 181257 50 4 0 35 chain 82286 chr6 171115067 + 161241368 161242434 MER11A 1151 + 0 1151 42636 55 0 99 140 4 0 224 0 5 161 0 1 125 0 26 24 44 1 56 0 1 18 6 5 30 0 1 179 chain 18621 chr6 171115067 + 161243677 161243888 L1PA5 6144 + 5928 6139 131157 211 chain 20879 chr6 171115067 + 161259534 161259783 AluYc 301 + 34 285 124362 86 1 3 162 chain 62295 chr6 171115067 + 161267538 161268222 L1PA4 6152 + 5467 6151 51754 684 chain 11107 chr6 171115067 + 161280405 161280639 L1MA5A 2387 + 2047 2247 155783 22 1 0 39 1 0 49 2 0 29 37 31 13 24 0 17 chain 362566 chr6 171115067 + 161287462 161292553 L1PA8 5853 - 0 4578 11301 92 2 1 19 7 6 32 4 5 9 2 1 9 5 4 67 2 0 44 1 0 168 204 0 60 3 4 323 2 0 31 0 1 371 0 2 227 23 7 154 2 1 250 0 1 922 0 15 16 1 2 51 0 3 73 1 0 164 2 1 264 312 2 113 0 1 63 0 6 20 22 1 128 0 16 71 7 6 47 1 0 368 0 7 32 0 1 192 0 1 90 6 1 12 chain 26104 chr6 171115067 + 161296406 161296710 AluY 311 + 3 308 99602 129 0 1 175 chain 25067 chr6 171115067 + 161304011 161304430 MER4A1 472 + 54 472 104473 131 16 13 139 72 74 61 chain 180447 chr6 171115067 + 161307426 161310248 MER4-int 2692 + 74 2692 20947 25 2 0 6 1 0 9 0 2 480 0 1 27 8 10 80 2 3 7 0 1 21 0 1 17 1 5 173 2 0 142 1 7 14 1 0 88 0 3 105 19 18 73 20 42 31 2 3 83 0 4 22 0 1 59 321 0 115 1 3 136 4 3 124 0 1 51 12 17 13 1 2 61 2 2 23 0 51 23 13 2 7 0 14 45 1 0 5 0 1 229 0 10 103 0 3 11 chain 49139 chr6 171115067 + 161311393 161311953 LTR6B 557 - 0 557 59641 48 1 0 114 1 0 373 1 0 22 chain 32382 chr6 171115067 + 161341955 161342382 MER83 447 + 3 404 80221 102 0 1 135 20 0 6 7 0 157 chain 44725 chr6 171115067 + 161397095 161397637 MER4E1 777 - 236 777 63354 84 0 1 279 0 3 149 5 0 25 chain 27077 chr6 171115067 + 161398356 161399183 MER4C 627 - 0 627 96012 90 12 13 73 1 0 4 0 1 6 29 133 30 0 14 7 27 52 65 1 0 45 1 2 8 343 0 58 1 0 26 chain 29573 chr6 171115067 + 161415541 161416262 L1PB2 3958 - 120 517 86305 63 1 0 6 5 0 90 1 0 16 307 0 46 1 0 68 9 4 92 4 0 12 chain 6193 chr6 171115067 + 161457852 161457978 Tigger4a 237 + 71 215 183640 40 8 0 10 16 24 26 2 20 24 chain 13218 chr6 171115067 + 161472685 161472868 MER2 342 - 21 205 147398 23 10 11 150 chain 3620 chr6 171115067 + 161482773 161482861 L1MB7 1623 - 89 168 213337 16 3 0 7 25 20 13 1 0 23 chain 4378 chr6 171115067 + 161494745 161494798 U3 216 - 159 212 202214 53 chain 4818 chr6 171115067 + 161511828 161511882 MER20 218 - 54 108 197140 54 chain 17086 chr6 171115067 + 161542070 161542408 L1PB1 5432 - 10 318 135360 18 1 0 12 1 0 22 1 0 25 1 0 13 1 0 5 10 8 22 13 1 15 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 8 7 13 chain 137516 chr6 171115067 + 161544199 161546010 L1PBa 3878 - 132 1956 26558 9 2 0 20 1 0 192 0 1 171 1 2 40 12 7 76 0 1 247 0 1 233 0 1 37 1 0 54 5 11 4 1 0 15 0 1 81 4 0 16 1 0 5 0 1 193 0 2 97 5 16 9 2 0 64 0 4 58 0 1 92 1 0 62 chain 24360 chr6 171115067 + 161565728 161566032 AluY 311 + 0 302 108315 64 10 8 230 chain 10072 chr6 171115067 + 161575771 161575901 MER75 514 + 188 321 160210 115 0 3 15 chain 44507 chr6 171115067 + 161577670 161578178 MER9a2 513 + 0 513 63572 18 0 1 426 0 4 64 chain 528320 chr6 171115067 + 161593686 161599787 L1PA5 6144 - 9 6140 4373 954 6 5 1330 1 0 594 2 1 7 0 13 575 0 1 330 1 0 18 3 0 346 1 0 726 2 0 64 9 0 68 1 2 230 1 2 292 0 17 162 0 2 193 0 1 48 1 0 20 0 14 116 chain 4763 chr6 171115067 + 161611271 161611426 L1MC2 1988 + 1848 1988 197775 45 80 65 30 chain 164095 chr6 171115067 + 161632780 161634937 MER4-int 2692 + 164 2674 22800 178 1 0 5 0 3 106 5 4 258 0 1 43 0 22 326 1 0 10 0 1 72 0 3 88 0 311 52 1 2 113 2 1 19 1 0 104 4 6 121 0 1 123 0 1 132 10 6 9 1 2 172 4 3 46 0 4 17 10 22 123 chain 32205 chr6 171115067 + 161634972 161635409 MER4A1 472 + 0 468 80516 15 5 8 10 1 0 5 0 4 178 4 28 109 0 1 110 chain 7882 chr6 171115067 + 161635414 161635514 Tigger3a 397 - 139 239 171801 100 chain 46728 chr6 171115067 + 161645901 161646547 LTR10F 562 + 0 562 61433 218 32 1 12 25 0 30 28 0 301 chain 2077 chr6 171115067 + 161646163 161646188 LTR10F 562 + 175 200 175898 25 chain 21282 chr6 171115067 + 161659682 161660028 THE1C 375 + 0 350 122924 68 32 0 8 1 33 26 1 5 42 16 16 152 chain 55785 chr6 171115067 + 161668537 161670055 L1PA13 3608 + 2671 3548 55254 90 2 0 94 334 22 96 0 2 157 2 0 11 303 0 17 1 0 67 13 14 32 2 0 62 1 0 19 6 0 37 1 0 5 2 0 5 0 10 33 10 6 18 1 0 14 29 22 14 1 0 6 7 1 10 4 1 12 chain 11385 chr6 171115067 + 161672965 161673107 MER85 139 - 0 139 154757 130 3 0 9 chain 11493 chr6 171115067 + 161689393 161689535 L1PA8A 6298 - 7 151 154325 104 5 7 33 chain 6158 chr6 171115067 + 161721432 161721538 MLT1B 390 - 112 221 183915 11 4 13 64 10 4 17 chain 56841 chr6 171115067 + 161722594 161723684 MER4E1 777 + 0 777 54634 148 2 0 7 11 10 161 9 10 62 4 1 28 307 0 123 2 1 226 chain 6150 chr6 171115067 + 161729876 161729955 LTR9B 643 - 555 638 183981 47 0 4 32 chain 38386 chr6 171115067 + 161730685 161731190 LTR10F 562 - 3 562 71592 293 28 0 4 6 0 27 0 3 29 1 85 33 0 1 84 chain 200617 chr6 171115067 + 161731490 161734263 HERVIP10FH-int 2884 - 60 2735 19165 35 10 4 14 1 0 16 1 0 50 1 0 65 1 0 366 1 0 20 5 4 79 4 6 115 10 9 258 5 4 15 1 0 3 10 0 39 22 10 30 92 55 12 5 2 14 2 0 129 7 1 63 1 0 9 1 0 8 16 10 756 1 0 222 4 2 65 5 6 120 9 4 55 chain 46127 chr6 171115067 + 161736146 161736906 LTR10F 562 - 0 562 61916 295 2 1 35 82 1 84 116 0 146 chain 4807 chr6 171115067 + 161736478 161736560 LTR10F 562 - 334 360 158803 18 56 0 8 chain 2874 chr6 171115067 + 161736664 161736694 LTR10F 562 - 406 436 227463 30 chain 2136 chr6 171115067 + 161736694 161736720 LTR10F 562 - 352 378 237313 26 chain 10060 chr6 171115067 + 161749162 161749293 LTR8 732 + 16 171 160271 16 0 9 71 0 15 44 chain 5846 chr6 171115067 + 161750769 161750836 MER4A 717 + 650 717 186721 67 chain 49105 chr6 171115067 + 161752727 161753291 LTR10C 591 + 0 563 59666 510 2 1 52 chain 24477 chr6 171115067 + 161756431 161756711 AluSp 311 - 17 297 107665 280 chain 27254 chr6 171115067 + 161808181 161808559 THE1C 375 + 0 375 95424 169 32 29 177 chain 39229 chr6 171115067 + 161828641 161829114 LTR7C 471 + 0 471 70413 97 3 0 84 5 0 7 1 6 246 0 1 30 chain 31440 chr6 171115067 + 161847281 161847672 MLT2A1 477 + 0 385 81749 168 9 6 199 3 0 12 chain 41451 chr6 171115067 + 161877103 161877652 MLT2A2 560 + 0 558 67347 111 1 0 57 13 12 224 1 12 142 chain 179020 chr6 171115067 + 161925559 161927523 L1PA3long 6157 - 0 1965 21072 4 0 1 1960 chain 3655 chr6 171115067 + 162008699 162008778 L1PB1 5432 - 10 86 212669 15 6 5 11 1 0 19 6 5 21 chain 4615 chr6 171115067 + 162009849 162009906 MER53 195 + 6 64 199458 53 0 1 4 chain 81194 chr6 171115067 + 162037445 162038436 L1PA7 6471 - 1 996 43090 330 9 11 389 0 1 115 1 4 118 2 1 22 1 0 4 chain 40224 chr6 171115067 + 162046117 162046603 L1PA6 6164 + 5677 6160 68996 477 3 0 6 chain 16062 chr6 171115067 + 162112607 162112931 MER82 654 + 262 596 138173 67 0 8 97 2 0 38 99 103 21 chain 5733 chr6 171115067 + 162119954 162120329 L1ME1 1623 + 857 1248 187813 20 82 86 21 61 62 34 3 0 11 1 0 19 104 119 19 chain 43318 chr6 171115067 + 162132591 162133148 MLT2A2 560 + 1 560 65017 125 0 2 59 2 0 8 0 3 98 0 1 111 0 1 106 5 2 43 chain 14708 chr6 171115067 + 162156208 162156453 Tigger2a 444 + 0 248 142251 13 40 37 52 6 9 107 0 3 27 chain 7978 chr6 171115067 + 162162817 162162972 THE1B 368 + 0 164 171189 47 31 39 22 8 9 47 chain 18775 chr6 171115067 + 162173178 162173427 AluSc 308 + 57 303 130756 146 8 10 69 5 0 21 chain 12876 chr6 171115067 + 162281627 162281778 L1PA8 5853 - 847 998 148045 151 chain 65258 chr6 171115067 + 162281778 162282624 L1PA8 5853 + 5009 5853 50440 13 5 6 402 0 6 128 2 0 43 3 1 71 1 0 8 7 6 47 2 1 19 1 0 87 1 0 6 chain 5150 chr6 171115067 + 162291117 162291199 5S 121 - 31 113 193543 44 10 0 8 0 10 20 chain 28736 chr6 171115067 + 162327715 162328142 MLT2A2 560 - 60 560 90184 40 0 29 18 3 14 27 1 2 24 20 52 114 1 0 119 0 1 60 chain 4243 chr6 171115067 + 162341440 162341540 Tigger3b 1229 - 208 299 203971 13 13 16 12 10 0 39 2 0 11 chain 57555 chr6 171115067 + 162386539 162387325 MER4E1 777 - 0 777 54206 108 1 3 116 1 8 32 5 4 231 31 13 138 0 1 123 chain 158159 chr6 171115067 + 162403263 162404951 L1HS 6032 + 4344 6032 23569 1688 chain 9858 chr6 171115067 + 162409984 162410097 L1PA4 6152 - 12 125 161295 113 chain 20211 chr6 171115067 + 162444885 162445187 L1PA17 2846 - 848 1137 126497 7 14 0 243 17 19 7 1 0 13 chain 13147 chr6 171115067 + 162469656 162469856 MER30 238 - 5 238 147654 41 3 0 70 5 35 55 5 11 21 chain 55629 chr6 171115067 + 162486615 162487268 L1PA6 6164 - 10 663 55347 653 chain 27147 chr6 171115067 + 162490110 162490464 THE1A 353 + 0 353 95768 109 12 11 233 chain 66714 chr6 171115067 + 162494934 162495672 L1PA2 6032 + 5290 6027 49779 405 0 1 185 0 1 135 3 0 10 chain 27551 chr6 171115067 + 162523795 162524103 AluY 311 + 2 311 94499 124 0 1 184 chain 78525 chr6 171115067 + 162534749 162535604 L1PA3long 6157 - 1001 1857 44182 73 0 1 782 chain 84687 chr6 171115067 + 162535604 162536536 L1PA3long 6157 + 5224 6156 41644 932 chain 37935 chr6 171115067 + 162577284 162577823 MLT2A2 560 - 0 559 72228 68 1 2 77 9 20 73 10 16 90 17 21 6 2 0 186 chain 19363 chr6 171115067 + 162608920 162609271 THE1B 368 + 0 348 129038 66 55 57 49 1 0 8 0 1 9 0 2 46 26 19 91 chain 100128 chr6 171115067 + 162629906 162631142 L1PA6 6164 + 4930 6162 36738 258 0 3 172 22 14 283 2 0 27 1 0 412 16 20 43 chain 30020 chr6 171115067 + 162637280 162637596 AluYb8 318 + 0 316 84741 316 chain 39699 chr6 171115067 + 162643885 162644335 L1PA3long 6157 - 0 443 69756 64 7 0 379 chain 39524 chr6 171115067 + 162690777 162691503 L1PB1 5432 + 4690 5391 69992 121 3 4 106 1 0 177 6 11 5 1 0 24 1 0 8 1 0 12 7 3 6 2 0 53 23 21 17 111 93 19 1 0 21 chain 55059 chr6 171115067 + 162700536 162701284 L1P3 4156 - 1010 1777 55666 147 0 12 328 29 31 54 15 17 129 0 1 4 1 0 33 0 3 8 chain 6999 chr6 171115067 + 162701861 162701947 L1P3 4156 + 3434 3519 177463 60 1 0 25 chain 10319 chr6 171115067 + 162701950 162702073 L1PA8A 6298 + 5970 6095 159041 117 0 2 6 chain 27207 chr6 171115067 + 162702121 162702458 L1PA7 6471 + 6132 6469 95572 61 0 1 264 1 0 11 chain 13945 chr6 171115067 + 162731623 162731781 L1PA5 6144 + 5980 6138 144772 158 chain 39945 chr6 171115067 + 162743822 162744269 L1PA2 6032 + 5588 6029 69399 377 6 0 64 chain 162492 chr6 171115067 + 162759312 162761189 SVA_F 1814 + 0 1814 22999 754 80 0 194 47 14 153 0 49 200 0 1 449 chain 2175 chr6 171115067 + 162760340 162760387 SVA_F 1814 + 963 1010 187763 47 chain 110691 chr6 171115067 + 162761580 162762917 L1PA7 6471 + 5079 6439 34035 235 9 19 151 0 1 83 0 1 45 2 0 9 0 7 41 0 5 645 0 2 7 1 0 109 chain 20740 chr6 171115067 + 162840977 162841268 MER1A 529 - 7 301 124816 42 25 27 156 0 1 68 chain 17655 chr6 171115067 + 162890571 162890909 L1PB1 5432 + 5123 5427 133825 10 1 0 14 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 18 2 0 5 chain 17102 chr6 171115067 + 162893251 162893477 L1PA5 6144 - 13 247 135308 124 0 7 16 14 15 72 chain 28496 chr6 171115067 + 162893500 162893822 AluYb8 318 - 0 318 91201 186 4 0 132 chain 225123 chr6 171115067 + 162985640 162989332 L1MA1 4479 + 245 4042 17585 32 3 1 80 1 2 26 1 2 4 1 0 122 8 4 318 7 40 11 1 0 144 0 1 32 344 0 62 1 0 41 0 1 132 6 7 94 17 11 85 4 5 33 36 486 4 1 0 16 1 2 28 0 1 11 0 1 82 4 0 27 5 9 149 2 0 230 1 5 16 1 0 65 2 1 19 0 19 65 2 0 33 1 0 42 0 1 15 21 20 20 10 1 55 1 0 27 2 0 173 1 0 17 4 0 76 1 0 5 25 15 118 2 0 23 6 9 98 2 0 195 1 0 25 2 0 16 1 0 17 14 16 38 1 0 20 2 0 13 33 32 53 6 1 7 3 0 90 chain 4994 chr6 171115067 + 163022132 163022373 MSTD 398 - 121 393 195205 27 133 167 13 17 15 28 1 0 22 chain 26957 chr6 171115067 + 163032936 163033250 AluY 311 + 1 308 96418 125 7 0 182 chain 39081 chr6 171115067 + 163052939 163053506 L1PA16 3655 + 3004 3557 70630 88 5 1 5 0 1 28 8 0 77 1 0 88 2 0 204 17 17 28 0 2 5 2 0 9 chain 28571 chr6 171115067 + 163071347 163071652 AluYa5 310 + 0 304 90860 97 1 0 207 chain 17429 chr6 171115067 + 163075684 163075967 THE1C 375 - 0 375 134439 24 6 5 137 2 0 14 12 8 9 1 2 18 0 98 60 chain 76817 chr6 171115067 + 163084971 163085958 L1PA8A 6298 - 7 1001 45078 26 13 4 109 0 4 590 8 14 44 7 11 48 0 1 121 1 2 20 chain 99634 chr6 171115067 + 163085958 163087165 L1PA8A 6298 + 4072 5279 36874 753 1 0 11 0 4 269 0 1 51 2 0 16 7 9 10 4 0 83 chain 37055 chr6 171115067 + 163102394 163103006 MER51A 677 + 0 662 73449 175 57 69 55 0 5 22 12 5 64 10 52 60 30 29 79 1 0 47 chain 4867 chr6 171115067 + 163113145 163113197 L1PA2 6032 + 5977 6029 196617 52 chain 3139 chr6 171115067 + 163138037 163138307 MLT1D 503 + 79 386 222196 28 137 167 20 4 49 12 54 16 15 chain 29799 chr6 171115067 + 163141470 163141781 AluYb8 318 - 7 318 85436 311 chain 19036 chr6 171115067 + 163168047 163168357 MLT2A1 477 + 0 320 130013 21 3 8 43 0 8 57 16 17 16 4 1 10 0 1 21 0 1 53 12 9 54 chain 22628 chr6 171115067 + 163174575 163174955 THE1D 372 + 0 372 117438 33 0 1 65 14 6 52 68 67 148 chain 26889 chr6 171115067 + 163194527 163194812 AluYb8 318 - 0 284 96673 192 1 0 92 chain 7534 chr6 171115067 + 163197929 163198102 L1PB1 5432 + 5261 5422 173952 19 2 1 13 17 14 18 3 1 5 1 0 14 2 0 23 2 1 22 1 0 12 1 0 18 chain 4169 chr6 171115067 + 163207396 163207445 MLT1J1 437 + 42 91 204988 49 chain 557247 chr6 171115067 + 163259624 163265652 L1PA2 6032 - 1 6030 586 4491 1 0 1297 14 16 225 chain 3370 chr6 171115067 + 163279593 163279669 MER39 703 - 79 159 217679 13 7 9 11 10 12 35 chain 11245 chr6 171115067 + 163291471 163291686 L1PB1 5432 - 5 196 155239 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 15 6 5 40 chain 41241 chr6 171115067 + 163297464 163297938 L1PA7 6471 - 720 1196 67599 51 0 2 423 chain 57307 chr6 171115067 + 163297938 163298627 L1PA7 6471 + 5768 6470 54335 15 0 12 86 0 3 5 3 0 78 6 7 496 chain 126279 chr6 171115067 + 163345762 163347413 L1PA10 4194 + 2499 4161 29010 162 1 0 116 5 8 319 3 4 4 1 0 171 0 1 50 5 7 17 10 13 219 0 4 18 0 1 26 0 1 28 3 0 38 3 5 365 2 0 28 0 4 8 3 0 34 1 0 11 chain 20391 chr6 171115067 + 163356978 163357333 THE1B 368 - 0 361 125924 128 58 63 42 26 27 101 chain 33028 chr6 171115067 + 163358985 163359554 L1PB1 5432 - 41 577 79171 21 1 0 20 35 30 21 17 4 15 1 0 40 10 9 10 2 1 53 15 9 11 1 0 13 11 9 11 5 0 7 1 4 248 chain 46217 chr6 171115067 + 163380891 163381691 L1PA16 3655 + 2846 3617 61836 53 1 0 23 2 1 67 0 1 39 0 1 100 1 0 73 1 0 82 19 17 24 3 4 70 27 28 75 2 0 5 6 8 25 0 2 5 33 28 12 38 14 14 chain 33835 chr6 171115067 + 163402446 163402878 L1PB1 5432 - 1334 1761 77880 84 4 0 51 0 1 181 0 1 53 3 0 56 chain 55695 chr6 171115067 + 163405077 163406033 L1PB1 5432 - 10 946 55308 18 1 0 12 1 0 22 1 0 24 2 0 12 11 8 13 32 22 54 7 6 10 2 1 52 2 0 9 5 1 14 1 0 7 1 0 19 17 15 27 2 1 78 6 9 135 0 1 46 1 9 60 5 6 29 9 8 65 5 0 28 0 4 111 chain 15490 chr6 171115067 + 163407017 163407313 L1PB 1623 + 1311 1575 139924 135 1 0 7 2 1 30 1 0 3 3 0 14 5 1 13 1 0 11 48 27 22 chain 558763 chr6 171115067 + 163410769 163416794 L1PA2 6032 - 0 6027 428 566 0 1 4280 0 1 1179 chain 4259 chr6 171115067 + 163447013 163447068 L1P4 1494 + 781 835 203749 33 1 0 21 chain 41122 chr6 171115067 + 163451538 163452025 MER41A 554 - 0 488 67747 258 0 1 229 chain 45128 chr6 171115067 + 163455797 163456971 MER41A 554 - 0 554 62898 126 0 1 80 0 1 248 622 0 98 chain 120637 chr6 171115067 + 163460401 163462020 THE1D-int 1627 + 0 1622 30825 38 1 0 657 58 59 540 0 3 31 12 12 198 2 1 78 0 1 4 chain 10329 chr6 171115067 + 163465202 163465417 AluJr 308 - 7 227 158990 66 19 20 56 32 34 13 11 13 18 chain 31270 chr6 171115067 + 163504177 163504637 MER4A1 472 + 0 472 82043 15 0 2 4 0 1 11 1 0 7 0 7 50 0 1 41 1 0 41 26 25 162 0 3 31 1 3 64 1 0 4 chain 45562 chr6 171115067 + 163519632 163520186 MER41A 554 - 0 554 62447 554 chain 6047 chr6 171115067 + 163525417 163525527 MSTD 398 - 0 107 184831 16 1 0 39 6 0 6 1 6 6 1 0 34 chain 14796 chr6 171115067 + 163595166 163595371 MER30 238 - 9 238 141944 65 5 11 19 8 26 108 chain 118856 chr6 171115067 + 163625783 163627451 L1PA15 4387 + 2684 4355 31471 9 0 19 228 0 1 8 4 5 107 0 1 105 1 0 28 7 8 99 0 1 103 0 4 403 20 14 106 1 0 115 0 1 17 2 0 38 1 0 27 1 0 54 1 0 22 18 13 47 6 3 11 0 2 31 3 1 14 5 0 26 chain 7669 chr6 171115067 + 163635215 163635326 MER3 215 + 101 211 173107 41 1 2 5 1 0 22 1 0 40 chain 50596 chr6 171115067 + 163644992 163646927 L1MA8 2339 + 752 1967 58580 51 2 0 27 1 2 45 721 387 7 1 0 128 12 15 54 1 0 138 7 0 36 407 39 116 2 0 25 23 20 89 4 0 23 2 0 13 chain 19707 chr6 171115067 + 163669804 163670070 AluY 311 + 40 305 128073 78 3 0 11 1 2 30 7 8 136 chain 11986 chr6 171115067 + 163671506 163671646 L1PB 1623 - 428 568 152263 140 chain 25373 chr6 171115067 + 163671646 163672282 L1PB1 5432 + 4916 5424 102817 63 1 0 4 0 1 60 90 9 45 33 15 25 1 0 9 16 11 11 3 1 50 2 1 16 2 1 43 1 0 11 7 4 17 64 52 5 1 0 21 1 0 13 1 0 20 chain 13585 chr6 171115067 + 163682290 163682457 L1PA8 5853 - 0 165 146035 93 1 0 15 2 1 56 chain 2793 chr6 171115067 + 163686547 163686577 MIR 256 + 165 195 228818 30 chain 37714 chr6 171115067 + 163691912 163692429 MLT2A2 560 - 0 560 72538 115 5 3 29 2 13 54 6 38 128 1 0 68 4 6 43 0 1 62 chain 28297 chr6 171115067 + 163693921 163694224 AluYa5 310 - 9 310 91956 183 2 0 118 chain 59984 chr6 171115067 + 163695064 163695749 L1PA5 6144 - 0 684 52835 255 1 0 429 chain 147212 chr6 171115067 + 163698149 163700412 L1PB1 5432 - 2 2001 25003 4 1 0 4 1 0 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 21 9 1 8 3 0 15 1 0 43 2 1 16 2 1 52 2 0 6 25 20 4 1 0 19 250 16 476 3 0 115 1 5 592 10 12 170 2 0 166 0 2 22 1 0 112 chain 29167 chr6 171115067 + 163704550 163704859 AluYb8 318 + 0 308 88218 132 1 0 176 chain 24582 chr6 171115067 + 163832867 163833152 AluSp 311 + 11 295 107075 100 1 0 184 chain 16319 chr6 171115067 + 163859437 163859759 Tigger3b 1229 - 25 349 137441 26 48 81 13 32 0 72 0 4 8 7 3 6 0 1 110 chain 20070 chr6 171115067 + 163864331 163864592 AluSg7 307 + 11 282 126920 120 0 1 4 5 6 115 0 8 17 chain 2805 chr6 171115067 + 163886802 163886873 L1M3 994 + 74 137 228667 25 8 1 12 10 9 16 chain 14371 chr6 171115067 + 163906865 163907082 MER30 238 - 0 238 143299 46 3 0 34 0 6 19 22 40 93 chain 17781 chr6 171115067 + 163924524 163924755 L1P4 1494 - 119 349 133473 25 1 0 205 chain 24874 chr6 171115067 + 163945492 163945798 AluSp 311 - 9 311 105490 28 5 0 153 0 1 120 chain 5914 chr6 171115067 + 163957389 163957469 Tigger2a 444 + 217 297 186062 54 0 2 5 2 0 19 chain 9243 chr6 171115067 + 163970056 163970190 THE1C 375 - 41 185 164335 92 4 17 25 3 0 10 chain 20547 chr6 171115067 + 163978361 163978802 L1MA3 4352 + 3877 4307 125477 109 6 8 29 2 0 32 105 88 47 4 18 27 4 0 23 2 0 21 11 9 19 chain 26759 chr6 171115067 + 164011224 164011720 LTR12F 595 + 0 595 97134 91 20 13 12 1 107 12 27 13 73 1 0 43 0 1 25 47 61 104 0 3 5 15 12 20 chain 47431 chr6 171115067 + 164025836 164026411 THE1C-int 1605 + 1030 1605 60879 516 5 4 45 0 1 9 chain 23258 chr6 171115067 + 164026411 164026733 THE1C 375 + 0 336 114401 76 14 0 49 3 0 20 3 0 5 0 34 152 chain 25572 chr6 171115067 + 164064486 164064779 AluY 311 + 6 298 101863 127 1 0 165 chain 24951 chr6 171115067 + 164065674 164065966 AluSc5 308 + 3 295 105055 292 chain 63412 chr6 171115067 + 164097402 164098249 HERVL-int 5654 + 4795 5654 51278 178 4 5 155 0 1 32 3 0 45 9 7 195 6 19 127 6 8 87 chain 43532 chr6 171115067 + 164098249 164098807 MLT2A2 560 + 0 560 64768 181 1 0 13 1 0 148 7 0 60 0 11 147 chain 44528 chr6 171115067 + 164117362 164117909 MLT2A2 560 - 0 552 63549 8 0 4 152 0 1 387 chain 20179 chr6 171115067 + 164168073 164168417 THE1B 368 - 0 368 126594 125 13 11 18 26 35 10 1 0 56 27 45 68 chain 42336 chr6 171115067 + 164179083 164179636 MER41A 554 + 0 554 66223 322 0 1 157 6 5 42 7 8 19 chain 36128 chr6 171115067 + 164220641 164221185 L1PB1 5432 + 4584 5103 74729 37 0 2 6 4 0 15 1 0 80 7 11 69 0 2 15 37 7 39 0 1 49 0 1 185 chain 20634 chr6 171115067 + 164274254 164274495 L1PA6 6164 + 5922 6161 125177 232 2 0 7 chain 26067 chr6 171115067 + 164279914 164280267 THE1B 368 + 2 368 99767 42 5 20 102 10 6 17 3 5 174 chain 7369 chr6 171115067 + 164308145 164308355 Tigger4a 237 + 43 237 174988 13 17 0 13 25 25 21 28 28 36 11 12 46 chain 18415 chr6 171115067 + 164317559 164317920 THE1B 368 + 0 368 131733 45 0 3 57 133 138 97 1 0 28 chain 21462 chr6 171115067 + 164342984 164343345 THE1B 368 - 0 368 122288 49 14 13 62 12 20 6 0 4 14 1 0 5 22 18 60 7 8 109 chain 4577 chr6 171115067 + 164346112 164346189 MLT1A0 366 + 15 93 199909 36 11 12 30 chain 20342 chr6 171115067 + 164346243 164346547 AluSg 306 + 9 305 126093 95 0 1 13 3 0 23 1 4 5 3 0 51 22 16 88 chain 54473 chr6 171115067 + 164351746 164352387 L1PA6 6164 - 2 643 56048 13 3 0 91 0 3 534 chain 17468 chr6 171115067 + 164356814 164357003 L1PA3long 6157 + 5968 6157 134336 189 chain 29042 chr6 171115067 + 164358443 164358884 MER4A1 472 - 2 472 88797 50 27 29 89 28 55 247 chain 44119 chr6 171115067 + 164361905 164362512 MER41B 635 + 12 613 64058 73 8 7 36 7 8 310 28 22 145 chain 4633 chr6 171115067 + 164369161 164369240 ORSL 269 - 156 236 199262 43 11 12 25 chain 142865 chr6 171115067 + 164397025 164398620 L1PA4 6152 - 0 1596 25673 113 0 1 708 0 1 700 1 0 73 chain 40372 chr6 171115067 + 164433837 164434300 LTR2 463 - 0 463 68774 463 chain 213289 chr6 171115067 + 164453117 164455497 L1PA4 6152 - 12 2397 18273 1788 0 4 429 0 1 163 chain 4112 chr6 171115067 + 164455498 164455542 MSTA 426 + 362 406 205744 44 chain 24063 chr6 171115067 + 164460404 164460682 AluY 311 + 8 286 109963 115 1 0 12 0 1 150 chain 52340 chr6 171115067 + 164468475 164469126 THE1B-int 1605 + 940 1605 57404 489 1 8 26 0 7 135 chain 30265 chr6 171115067 + 164474315 164474835 MLT2A2 560 + 0 560 84022 180 2 0 26 38 39 63 10 42 49 4 15 28 4 2 58 39 39 19 chain 2742 chr6 171115067 + 164512275 164512306 MADE1 96 + 3 34 229579 31 chain 28456 chr6 171115067 + 164533998 164534364 THE1B 368 + 0 368 91350 14 0 2 24 0 5 128 1 0 29 3 0 91 1 0 75 chain 17296 chr6 171115067 + 164552387 164552731 MLT2A1 477 + 0 477 134795 168 5 2 9 0 1 11 114 249 37 chain 28610 chr6 171115067 + 164579516 164579892 THE1C 375 - 0 374 90696 26 1 0 234 5 6 95 2 0 13 chain 119192 chr6 171115067 + 164579893 164581436 THE1C-int 1605 - 0 1605 31339 272 1 2 175 1 0 122 0 1 60 0 2 158 2 1 135 1 2 5 1 0 212 11 18 205 1 0 58 0 54 123 chain 27541 chr6 171115067 + 164581436 164581812 THE1C 375 - 0 375 94530 26 1 0 198 2 0 68 15 17 66 chain 4195 chr6 171115067 + 164593865 164593912 HY4 93 + 0 47 204611 47 chain 122860 chr6 171115067 + 164625609 164627193 THE1B-int 1605 + 0 1605 30095 43 2 3 300 5 0 86 0 25 355 0 7 7 12 5 387 0 1 314 1 0 72 chain 3762 chr6 171115067 + 164672088 164672129 MLT2A2 560 + 518 559 210938 41 chain 23155 chr6 171115067 + 164689338 164689682 THE1B 368 - 0 368 114871 125 17 29 14 4 2 26 1 0 117 1 16 39 chain 12706 chr6 171115067 + 164699405 164699731 THE1C 375 + 0 355 149433 117 135 162 7 0 1 41 6 8 14 1 0 5 chain 7674 chr6 171115067 + 164699550 164699635 THE1C 375 - 89 174 173079 85 chain 42556 chr6 171115067 + 164713233 164713718 L1PA5 6144 - 3 485 65952 6 4 0 138 0 1 337 chain 27753 chr6 171115067 + 164759801 164760211 LTR7 482 - 0 482 93853 49 12 14 51 1 0 73 5 6 25 8 40 109 9 47 68 chain 286613 chr6 171115067 + 164761466 164765401 HERVH-int 3825 - 0 3825 14251 225 0 2 58 1 0 210 0 210 39 9 11 652 15 16 253 9 12 127 0 4 231 0 3 56 4 31 215 1 0 13 0 2 24 9 0 205 15 0 52 6 5 390 1 0 49 41 61 12 24 0 18 234 0 8 3 0 27 90 1 13 4 0 10 1 0 10 1 0 24 0 1 4 1 0 10 1 0 15 0 1 182 7 6 305 0 1 21 chain 2088 chr6 171115067 + 164764635 164764658 HERVH-int 3825 - 3156 3179 237767 23 chain 25108 chr6 171115067 + 164765412 164765812 LTR7 482 - 9 482 104234 40 12 14 52 1 2 69 6 7 11 4 35 18 0 1 109 9 47 33 5 4 31 chain 29118 chr6 171115067 + 164784557 164784865 AluYg6 310 + 0 308 88466 308 chain 30163 chr6 171115067 + 164787420 164787735 AluYb8 318 + 0 315 84296 315 chain 28074 chr6 171115067 + 164790849 164791210 MER75 514 + 54 419 92744 219 1 5 141 chain 18933 chr6 171115067 + 164839734 164839984 L1PA8 5853 - 0 252 130282 93 1 0 17 1 0 62 1 7 66 2 0 7 chain 82027 chr6 171115067 + 164893401 164894319 L1PA4 6152 - 2166 3084 42719 918 chain 192341 chr6 171115067 + 164894319 164896470 L1PA4 6152 + 3983 6136 19831 156 0 1 1757 0 1 238 chain 306419 chr6 171115067 + 164908309 164912433 L1P3 4156 - 17 4155 13156 24 2 1 7 2 0 422 3 0 58 0 2 104 5 6 418 0 4 265 10 11 24 0 1 163 9 1 58 0 2 440 2 0 120 0 1 654 17 8 9 0 9 51 11 12 88 1 2 109 3 1 209 3 4 201 12 16 115 23 23 77 12 10 88 2 1 14 6 7 38 5 19 46 0 1 194 chain 13499 chr6 171115067 + 164921814 164922048 MER2 342 + 19 261 146363 34 36 35 28 6 15 130 chain 28005 chr6 171115067 + 164933257 164933612 THE1A 353 + 0 353 92984 110 1 0 88 1 0 155 chain 116864 chr6 171115067 + 164933972 164935277 L1PA4 6152 - 0 1323 32173 658 0 2 48 0 2 218 0 1 8 1 14 372 chain 50723 chr6 171115067 + 164935277 164935839 L1PA4 6152 + 4259 4821 58366 562 chain 45543 chr6 171115067 + 164937175 164937887 THE1C-int 1605 - 12 1560 62468 61 0 1 190 4 5 48 38 942 40 71 0 171 0 1 89 chain 4099 chr6 171115067 + 164967251 164967419 L1MEf 1413 + 776 985 205956 26 102 143 40 chain 2789 chr6 171115067 + 164969671 164969962 LTR43 600 + 231 530 109165 207 10 8 60 0 10 14 chain 57044 chr6 171115067 + 164970018 164970740 L1PA8A 6298 - 7 727 54505 327 2 0 393 chain 623 chr6 171115067 + 164972132 164972197 LTR43 600 + 530 595 109165 65 chain 27573 chr6 171115067 + 164989578 164989992 MER51B 395 - 0 395 94425 149 4 1 107 36 33 65 13 0 40 chain 2826 chr6 171115067 + 165020302 165020381 MER45A 178 - 7 87 228293 14 36 37 29 chain 4141 chr6 171115067 + 165032333 165032402 MER41-int 2638 + 1363 1431 205354 11 10 9 48 chain 3992 chr6 171115067 + 165040787 165040833 UCON12 82 - 7 53 207506 46 chain 286923 chr6 171115067 + 165074884 165078684 HERVH-int 3825 - 0 3825 14226 225 6 8 225 3 9 6 6 0 14 8 218 39 9 11 962 0 2 9 0 5 370 10 37 459 15 0 447 1 0 68 0 20 35 45 0 7 6 4 14 45 0 13 1 0 14 22 12 12 122 0 10 1 0 24 0 1 6 1 0 9 1 0 194 25 24 66 0 1 245 chain 9443 chr6 171115067 + 165077982 165078102 HERVH-int 3825 - 3246 3364 154648 9 1 0 24 0 1 6 1 0 7 1 0 71 chain 26165 chr6 171115067 + 165078686 165079047 LTR7 482 - 0 482 99345 190 0 31 26 10 11 60 6 95 69 chain 10369 chr6 171115067 + 165083657 165083766 AluYk12 309 + 199 308 158835 109 chain 25985 chr6 171115067 + 165085970 165086287 L1PA7 6471 + 6149 6466 100074 317 chain 3346 chr6 171115067 + 165088442 165088483 L1ME1 1623 - 319 360 218110 41 chain 24450 chr6 171115067 + 165090192 165090501 AluY 311 + 16 308 107801 107 2 0 10 13 0 166 2 0 9 chain 557321 chr6 171115067 + 165123784 165129932 L1PA3long 6157 - 0 6153 576 3003 0 1 2213 0 4 932 chain 174520 chr6 171115067 + 165144129 165146076 L1PA3long 6157 - 0 1950 21538 1520 1 0 283 0 4 143 chain 63136 chr6 171115067 + 165146076 165146801 L1HS 6032 + 1094 1820 51086 629 1 2 95 chain 82871 chr6 171115067 + 165155597 165156567 L1PA6 6164 - 2 976 42386 158 4 3 174 0 1 504 0 4 130 chain 131242 chr6 171115067 + 165156588 165158098 SVA_C 1631 - 6 1631 27811 607 1 0 96 10 97 64 0 1 62 0 40 450 1 0 110 5 0 77 0 1 7 7 0 13 chain 5718 chr6 171115067 + 165185005 165185108 MLT1A-int 1186 + 1012 1116 187954 49 1 2 16 1 8 8 7 0 21 chain 505610 chr6 171115067 + 165195468 165201482 L1PA5 6144 - 0 6141 6487 140 2 1 6 0 1 1666 0 2 1627 6 7 177 0 2 1622 1 129 64 7 0 118 10 9 322 24 25 65 25 12 14 11 25 107 chain 27478 chr6 171115067 + 165205674 165205994 AluYb8 318 + 8 318 94722 115 3 0 111 8 1 83 chain 117890 chr6 171115067 + 165211087 165212365 L1PA2 6032 + 4753 6031 31834 1278 chain 38513 chr6 171115067 + 165221034 165221558 MLT2A2 560 - 13 558 71419 104 0 1 8 17 28 373 7 16 15 chain 30338 chr6 171115067 + 165235644 165236125 L1MA2 4263 + 3645 4114 83809 13 10 9 141 2 0 145 25 22 83 7 0 11 3 0 6 0 5 24 1 0 10 chain 42360 chr6 171115067 + 165244609 165245165 MLT2A2 560 + 0 559 66203 32 11 10 137 0 1 149 8 0 77 0 11 142 chain 16092 chr6 171115067 + 165255642 165255892 MER47B 469 - 21 371 138082 128 0 2 26 13 78 39 9 42 35 chain 38881 chr6 171115067 + 165281087 165281532 L1PA5 6144 - 0 443 70895 262 2 0 181 chain 23852 chr6 171115067 + 165281532 165281808 L1P1 4361 + 3854 4131 111172 227 0 1 49 chain 37923 chr6 171115067 + 165307719 165308173 L1PA7 6471 + 6004 6470 72244 272 0 2 118 2 12 62 chain 122594 chr6 171115067 + 165346607 165348092 LTR12C 1709 + 0 1709 30194 257 6 7 31 1 2 139 0 1 282 0 118 272 12 9 106 0 4 168 0 102 211 chain 169455 chr6 171115067 + 165361052 165370837 L1PA3long 6157 - 1745 3763 22121 895 0 2 387 7769 0 734 chain 154519 chr6 171115067 + 165362424 165364150 L1PA3long 6157 + 4430 6157 24041 540 0 1 1186 chain 267834 chr6 171115067 + 165370837 165373798 L1PA3long 6157 + 3192 6157 15303 754 0 1 417 1 3 950 0 1 839 chain 147030 chr6 171115067 + 165389739 165391508 L1PA7 6471 - 2 1791 25017 154 1 0 44 0 11 377 6 10 173 0 2 74 0 4 940 chain 17091 chr6 171115067 + 165392395 165392576 L1PA4 6152 + 5970 6151 135343 181 chain 24242 chr6 171115067 + 165396601 165396881 AluY 311 + 0 296 108978 132 0 1 27 0 15 121 chain 14965 chr6 171115067 + 165414457 165414912 LTR12C 1709 - 146 1055 141432 22 1 0 43 206 621 20 0 40 44 15 0 7 2 17 95 chain 227586 chr6 171115067 + 165429943 165432514 L1PA5 6144 - 12 2585 17446 214 1 6 606 9 5 1140 1 2 600 chain 22086 chr6 171115067 + 165440626 165440874 AluY 311 + 60 309 119855 72 0 1 176 chain 24494 chr6 171115067 + 165477492 165477800 AluYk4 311 + 0 295 107575 132 18 6 106 1 0 51 chain 11442 chr6 171115067 + 165491927 165492056 L1PA4 6152 - 9 138 154527 129 chain 21986 chr6 171115067 + 165492437 165492797 THE1A 353 - 0 353 120286 19 5 1 119 51 49 55 1 0 110 chain 46800 chr6 171115067 + 165512467 165513304 MER52-int 3354 + 2428 3247 61370 103 9 1 121 21 19 46 2 23 33 7 6 52 9 7 41 2 0 15 1 0 36 2 0 11 1 0 42 2 0 33 1 0 14 33 29 7 2 0 6 1 0 33 0 2 11 2 0 40 3 2 14 19 13 28 2 1 6 1 0 7 1 0 17 chain 78249 chr6 171115067 + 165536411 165537259 L1PA3long 6157 - 1160 2008 44392 848 chain 97523 chr6 171115067 + 165537259 165538341 L1PA3long 6157 + 5070 6152 37413 1082 chain 33707 chr6 171115067 + 165545749 165546450 MLT2A2 560 - 60 558 78089 87 8 19 199 223 0 15 1 0 5 0 10 94 16 16 53 chain 18985 chr6 171115067 + 165576066 165576315 THE1C 375 - 125 375 130143 61 3 4 185 chain 18405 chr6 171115067 + 165595713 165595956 LTR18A 364 + 55 325 131764 165 11 38 67 chain 3671 chr6 171115067 + 165608247 165608287 MLT2A2 560 + 520 560 212380 40 chain 169594 chr6 171115067 + 165608287 165610434 HERVL-int 5654 + 0 2157 22105 171 1 3 244 1 3 563 11 3 4 0 1 117 8 7 9 1 2 33 0 9 11 12 13 48 0 1 220 0 1 192 2 1 166 0 1 258 0 1 75 chain 38108 chr6 171115067 + 165627634 165628092 L1PA7 6471 - 3 456 71971 7 3 0 396 3 1 49 chain 11790 chr6 171115067 + 165651176 165651323 THE1B-int 1605 + 218 366 153096 143 0 1 4 chain 5049 chr6 171115067 + 165651349 165651406 THE1B 368 + 299 356 194646 57 chain 58985 chr6 171115067 + 165660358 165661055 L1PA6 6164 - 2 716 53406 143 2 16 107 0 2 60 0 1 385 chain 34462 chr6 171115067 + 165661062 165661444 L1PA6 6164 + 5064 5446 76974 382 chain 16900 chr6 171115067 + 165678511 165678690 L1PA4 6152 + 5972 6151 135846 179 chain 284064 chr6 171115067 + 165697064 165701000 L1PA10 4194 + 227 4161 14411 5 2 0 9 1 0 9 1 0 15 9 7 14 1 0 8 47 21 20 2 0 21 1 0 4 5 6 14 1 0 13 28 17 74 1 0 5 2 1 368 0 4 32 0 1 268 1 0 318 0 10 266 4 5 193 5 18 95 1 2 131 0 20 24 0 1 135 10 14 43 0 1 56 7 8 120 0 1 32 5 1 142 0 1 92 0 1 53 16 12 111 0 3 204 20 24 108 2 1 16 0 1 98 14 10 548 3 0 32 4 1 35 1 0 11 chain 299758 chr6 171115067 + 165716768 165719972 L1HS 6032 + 2824 6028 13439 3204 chain 29737 chr6 171115067 + 165732039 165732441 L1PA8 5853 - 0 395 85703 93 1 0 19 3 2 51 1 0 9 1 0 69 2 0 39 8 7 106 chain 29269 chr6 171115067 + 165749956 165750269 AluYb8 318 + 0 313 87693 313 chain 25627 chr6 171115067 + 165764110 165764488 THE1C 375 + 0 375 101597 87 0 1 91 37 34 136 1 0 26 chain 503981 chr6 171115067 + 165782172 165787729 L1PA3long 6157 + 596 6157 6604 833 0 1 420 1 0 171 0 1 1251 0 2 286 0 1 1671 1 0 634 0 1 289 chain 65154 chr6 171115067 + 165807574 165808334 L1PA7 6471 - 17 777 50498 760 chain 45488 chr6 171115067 + 165812931 165813440 L1PA4 6152 - 9 525 62507 145 0 7 364 chain 8536 chr6 171115067 + 165823050 165823140 5S 121 + 0 90 168096 90 chain 3471 chr6 171115067 + 165829189 165829227 MIRb 242 - 119 157 215788 38 chain 22622 chr6 171115067 + 165855632 165855889 L1PA4 6152 - 0 257 117476 257 chain 311644 chr6 171115067 + 165873396 165877150 HERVK9-int 4720 + 36 4720 12939 13 8 5 4 1 0 66 1 0 8 1 0 28 1 0 1058 0 1 159 4 0 118 0 924 45 1 0 4 0 1 496 1 0 86 0 4 241 0 7 198 0 3 1094 4 1 11 0 6 103 chain 43379 chr6 171115067 + 165877166 165877666 MER9a2 513 + 13 513 64959 61 3 0 16 0 3 420 chain 4135 chr6 171115067 + 165878193 165878465 L1ME2z 1083 - 158 387 205432 16 18 17 14 173 132 31 1 0 19 chain 145605 chr6 171115067 + 165904459 165906394 L1PBa 3878 + 1744 3744 25239 118 3 0 164 0 12 396 0 35 98 0 1 143 1 0 6 0 1 114 1 2 205 9 12 163 13 7 51 0 12 63 0 8 224 1 2 118 12 15 24 2 0 6 chain 454020 chr6 171115067 + 165937748 165943366 HERVL-int 5654 + 7 5654 8614 328 0 1 80 1 3 367 0 2 52 6 8 19 7 8 63 1 6 226 0 1 127 4 3 617 0 1 71 0 1 340 0 1 511 7 6 491 1 0 215 1 2 11 20 12 588 1 0 4 0 37 92 0 1 620 0 5 202 32 0 167 0 1 110 4 14 13 0 1 219 chain 31147 chr6 171115067 + 165943366 165943828 MLT2A1 477 + 0 469 82263 140 0 1 28 1 5 200 61 63 32 chain 12536 chr6 171115067 + 165967597 165967781 L1MA1 4479 + 3958 4139 150095 116 9 8 23 3 1 33 chain 47692 chr6 171115067 + 165971538 165972446 L1PA5 6144 + 5580 6140 60702 433 354 6 121 chain 5059 chr6 171115067 + 165974267 165974423 MSTA 426 + 29 198 194542 15 67 73 27 8 15 39 chain 116671 chr6 171115067 + 166005508 166006946 L1PA7 6471 + 5024 6468 32236 85 2 0 165 0 7 340 5 8 81 7 6 604 8 11 121 1 0 7 3 0 9 chain 24383 chr6 171115067 + 166014467 166014816 THE1A 353 + 4 351 108182 59 3 4 17 6 5 17 5 4 56 0 1 35 2 0 149 chain 97018 chr6 171115067 + 166021609 166022705 L1PA5 6144 - 8 1108 37559 146 0 1 184 1 0 504 0 4 261 chain 93691 chr6 171115067 + 166022705 166023748 L1PA5 6144 + 3840 4884 38412 171 0 1 872 chain 5598 chr6 171115067 + 166057062 166057394 L1MA7 2200 + 1880 2170 189097 36 132 118 16 12 1 31 74 58 18 1 0 12 chain 116686 chr6 171115067 + 166177920 166179337 LTR12C 1709 - 0 1709 32230 63 0 4 46 0 10 82 1 0 40 23 24 124 2 0 88 0 4 106 3 1 5 1 0 85 0 278 312 0 1 436 chain 13263 chr6 171115067 + 166241165 166241452 L1PB1 5432 - 9 272 147239 19 1 0 13 1 0 21 1 0 12 0 1 11 2 0 6 59 44 16 1 0 43 19 17 52 2 0 8 chain 37737 chr6 171115067 + 166250279 166250699 L1PA2 6032 + 5612 6031 72502 164 1 0 255 chain 18283 chr6 171115067 + 166340483 166340713 L1PA7 6471 + 6228 6466 132119 167 0 10 53 2 0 8 chain 4495 chr6 171115067 + 166383047 166383111 MADE1 96 - 10 96 200835 29 5 27 30 chain 7614 chr6 171115067 + 166416379 166416473 MER45A 178 - 0 94 173453 94 chain 39044 chr6 171115067 + 166428529 166429048 MLT2A2 560 + 0 560 70673 71 8 9 60 6 23 22 6 29 346 chain 223408 chr6 171115067 + 166450212 166453434 L1PB1 5432 - 22 3882 17692 5 0 2 11 1 0 22 1 0 23 54 40 7 3 0 4 1 0 8 7 6 46 1 0 17 9 7 4 0 1 39 2 0 9 7 3 10 1 0 8 1 0 22 5 0 9 6 9 467 6 0 31 3 672 142 15 27 34 1 4 212 0 2 377 1 0 233 2 1 78 1 0 49 1 2 183 1 6 41 0 1 36 5 0 240 15 1 49 0 1 31 1 0 13 8 7 186 0 2 13 6 5 347 17 21 34 chain 28926 chr6 171115067 + 166505612 166505914 AluYg6 310 - 8 310 89345 302 chain 14366 chr6 171115067 + 166507580 166507776 L1PREC2 3366 - 733 931 143326 54 0 4 91 7 5 44 chain 112429 chr6 171115067 + 166508666 166510385 L1PA13 3608 - 60 1761 33556 11 3 0 7 7 0 4 1 2 6 1 0 16 6 1 11 14 11 11 1 0 20 19 15 37 21 18 17 1 0 24 2 1 63 2 0 41 1 5 68 1 0 30 5 0 160 1 0 13 1 2 385 19 15 134 2 0 48 0 1 18 21 20 98 11 23 139 0 4 37 9 12 75 3 4 94 chain 185161 chr6 171115067 + 166536207 166538725 Charlie3 2679 - 119 2660 20486 47 18 9 45 11 12 274 12 14 62 10 33 305 22 16 34 0 1 17 0 2 435 3 5 336 0 1 337 1 6 5 5 0 86 0 1 104 0 5 10 1 4 72 4 6 40 4 0 196 7 6 15 chain 249857 chr6 171115067 + 166548913 166552686 L1PBa 3878 + 295 3777 16265 333 2 1 117 43 54 9 8 0 111 1 2 81 0 1 187 2 0 352 28 27 32 36 22 133 0 4 137 5 0 374 1 0 372 0 1 61 0 2 242 1 2 87 325 18 47 1 4 38 0 4 72 2 0 4 0 2 24 2 23 359 1 10 71 2 1 21 2 0 11 19 13 11 1 0 5 chain 27889 chr6 171115067 + 166552718 166553213 L1PB1 5432 + 4952 5420 93397 151 1 0 14 4 1 19 1 0 8 2 1 22 2 0 51 3 2 16 1 0 43 1 0 14 26 14 19 3 1 4 1 0 14 2 0 22 12 11 11 1 4 10 1 0 16 chain 38771 chr6 171115067 + 166558930 166559430 MLT2A2 560 + 0 526 71053 98 1 0 71 13 29 201 3 14 113 chain 75628 chr6 171115067 + 166588286 166589133 L1PA3long 6157 + 5311 6157 45700 671 3 1 33 0 1 140 chain 225842 chr6 171115067 + 166598750 166601773 L1PA6 6164 + 3451 6162 17537 229 14 11 474 0 1 1149 0 6 176 0 1 184 0 1 150 0 1 80 320 0 88 1 2 158 chain 149870 chr6 171115067 + 166637921 166639660 L1PA5 6144 + 4389 6130 24630 188 6 7 4 1 0 1195 0 1 205 0 1 140 chain 25643 chr6 171115067 + 166663196 166663496 AluSg7 307 - 4 307 101528 28 0 2 146 0 1 126 chain 46288 chr6 171115067 + 166708504 166709080 LTR19B 566 + 0 566 61781 172 0 1 120 1 0 7 14 0 42 0 2 146 1 3 73 chain 139326 chr6 171115067 + 166728082 166729870 HERV17-int 4347 + 12 3881 26243 15 1 0 52 5 4 32 2 0 17 8 7 124 29 8 39 1 0 4 0 1 20 6 436 580 1 0 39 1 0 78 4 0 66 0 1 211 3 4 104 0 2 204 0 1672 10 0 3 17 0 4 115 chain 7487 chr6 171115067 + 166750392 166750494 MLT1A0 366 - 264 366 174229 54 0 1 16 1 0 31 chain 10793 chr6 171115067 + 166757446 166757563 AluSg7 307 + 180 297 157023 117 chain 29919 chr6 171115067 + 166757573 166757979 MER41A 554 - 123 526 85048 30 14 5 63 0 3 113 6 9 180 chain 42399 chr6 171115067 + 166759607 166760142 HERV17-int 4347 - 466 2681 66150 115 0 4 17 0 3 7 0 1672 312 4 5 80 chain 3967 chr6 171115067 + 166779157 166779209 Tigger4a 237 + 3 69 207890 45 0 14 7 chain 25142 chr6 171115067 + 166794144 166794456 AluSp 311 + 0 311 104049 25 1 0 286 chain 100540 chr6 171115067 + 166806128 166807397 LTR12C 1709 - 163 1709 36619 75 3 0 5 0 3 235 11 4 106 4 1 5 1 0 42 0 2 87 0 278 45 7 9 337 0 2 28 0 4 278 chain 23409 chr6 171115067 + 166813272 166813554 AluY 311 + 13 303 113601 19 5 10 90 0 1 133 1 3 34 chain 379028 chr6 171115067 + 166838771 166842934 L1PA3long 6157 + 1975 6157 10789 351 1 0 835 0 1 353 0 1 978 0 2 180 3 0 766 14 33 540 1 0 113 0 1 28 chain 37244 chr6 171115067 + 166853889 166854384 MER75 514 - 17 506 73177 5 2 0 68 0 4 381 3 0 4 0 3 14 8 0 10 chain 35663 chr6 171115067 + 166929204 166929679 MER4A1 472 + 0 472 75319 229 10 2 160 13 15 14 0 3 49 chain 4928 chr6 171115067 + 166930794 166930924 MER9a3 513 + 0 177 85622 18 0 2 76 9 54 27 chain 30344 chr6 171115067 + 166930944 166931262 AluYb8 318 - 0 318 83795 318 chain 11827 chr6 171115067 + 166931267 166931579 MER9a3 513 + 178 513 85622 78 20 2 16 0 18 26 0 21 61 0 1 33 1 2 77 chain 120442 chr6 171115067 + 166941704 166943066 L1PA5 6144 + 4780 6143 30892 514 1 0 836 1 3 10 chain 26357 chr6 171115067 + 166947436 166947738 AluYk4 311 + 8 310 98587 302 chain 123345 chr6 171115067 + 166989746 166991298 THE1A-int 1579 + 0 1569 29932 292 1 0 358 0 1 4 0 2 193 15 17 29 2 1 452 0 14 206 chain 23197 chr6 171115067 + 166991334 166991662 THE1A 353 + 25 353 114691 22 7 8 39 1 0 17 0 2 7 7 5 228 chain 43178 chr6 171115067 + 167009752 167010292 MLT2A2 560 + 19 560 65199 184 0 1 87 1 0 4 9 10 255 chain 23877 chr6 171115067 + 167038330 167038619 AluSc5 308 - 18 308 111041 16 1 2 272 chain 17934 chr6 171115067 + 167082380 167082668 AluJb 308 - 9 295 133018 17 0 4 37 23 20 65 19 17 21 1 0 105 chain 85301 chr6 171115067 + 167093068 167094335 LTR12D 1347 + 0 1347 41419 50 20 15 178 0 1 52 0 37 63 0 1 139 71 25 6 2 0 132 14 7 25 0 2 83 22 23 106 7 8 55 0 97 22 1 0 4 5 6 210 chain 2295 chr6 171115067 + 167093614 167093641 LTR12D 1347 + 501 528 225534 27 chain 97500 chr6 171115067 + 167201087 167202339 L1PA8 5853 + 4620 5853 37424 391 7 1 104 13 6 442 1 0 44 2 0 74 1 0 58 2 1 19 2 1 92 chain 536664 chr6 171115067 + 167202362 167208497 L1PA4 6152 + 2 6151 3358 524 4 0 54 1 0 472 0 1 140 3 0 5 7 10 36 1 0 1076 6 5 743 0 1 96 4 0 100 1 16 1005 0 2 1718 0 7 52 1 0 86 chain 377718 chr6 171115067 + 167256980 167262380 L1PB1 5432 + 22 5422 10824 31 0 1 108 8 9 127 18 17 48 0 1 163 54 51 9 0 4 17 2 1 268 30 32 478 15 10 118 4 75 24 0 1 94 0 1 129 4 5 614 0 3 36 2 0 89 0 2 53 1 0 193 2 0 172 1 2 556 53 0 166 1 8 50 3 2 555 1 0 272 6 4 14 3 6 64 1 2 6 0 1 4 1 0 79 2 1 76 1 0 110 0 3 15 0 1 24 35 35 41 1 2 8 2 1 32 1 0 12 5 1 9 2 0 52 2 1 16 2 1 36 9 8 10 49 35 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3220 chr6 171115067 + 167260451 167260485 L1PB1 5432 + 3504 3538 220571 34 chain 32174 chr6 171115067 + 167282101 167282736 MLT2A1 477 + 0 477 80572 15 0 4 49 17 5 96 4 1 163 0 7 45 9 0 12 170 25 55 chain 3507 chr6 171115067 + 167297414 167297452 tRNA-Gly-GGA 38 - 0 38 215260 38 chain 523751 chr6 171115067 + 167298299 167304478 L1PA5 6144 + 0 6138 4790 121 0 14 18 3 15 178 9 5 112 56 16 690 9 0 1138 3 0 7 0 1 843 4 0 100 0 15 673 0 1 1071 1 0 231 1 0 45 1 0 344 28 6 187 0 1 306 chain 42512 chr6 171115067 + 167304574 167305089 LTR17 781 + 259 781 65998 68 1 0 61 0 10 99 2 0 284 chain 372929 chr6 171115067 + 167306797 167311103 HERV17-int 4347 + 12 4347 10997 15 1 0 50 2 1 35 1 0 26 1 0 68 18 18 487 0 1 755 2 4 62 0 1 105 0 3 103 1 2 348 0 1 947 0 1 392 0 22 736 0 1 151 chain 26961 chr6 171115067 + 167311417 167311741 LTR17 781 + 0 326 96405 305 0 2 19 chain 73591 chr6 171115067 + 167328617 167329469 MER11D 897 - 0 897 46738 278 3 26 185 0 21 121 0 1 265 chain 37799 chr6 171115067 + 167371768 167372239 LTR2B 499 - 0 490 72419 182 1 0 10 0 1 12 0 2 162 0 19 46 1 0 51 1 0 5 chain 14270 chr6 171115067 + 167376540 167378471 L1PA16 3655 - 439 1535 143648 17 6 5 64 1651 818 34 14 15 24 1 0 22 6 5 92 chain 25113 chr6 171115067 + 167402792 167403120 LTR2 463 - 12 335 104206 69 0 1 181 11 5 67 chain 4894 chr6 171115067 + 167403122 167403245 MER34A1 583 - 448 558 196340 20 32 34 43 15 0 13 chain 29676 chr6 171115067 + 167443193 167443639 LTR7B 505 - 17 505 85913 34 14 13 52 0 1 23 1 0 84 30 1 28 6 68 69 0 10 105 chain 39681 chr6 171115067 + 167452304 167453325 L1PB1 5432 - 5 687 69785 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 12 16 14 12 24 12 16 1 0 40 22 20 52 2 0 9 324 17 4 1 0 24 20 18 34 12 11 222 14 12 72 chain 5499 chr6 171115067 + 167469036 167469193 MER2 342 - 162 342 190043 34 0 6 8 68 84 35 1 2 11 chain 109180 chr6 171115067 + 167476877 167478591 HERVL-int 5654 - 0 1392 34397 79 4 1 129 0 4 19 318 0 53 0 4 324 21 0 64 2 0 487 0 13 157 8 9 49 chain 14358 chr6 171115067 + 167478615 167478774 MLT2A2 560 - 401 560 143351 159 chain 2962 chr6 171115067 + 167480233 167480266 L1MB7 1623 + 1385 1418 225845 33 chain 492422 chr6 171115067 + 167494446 167500000 L1PA4 6152 - 26 5580 7249 471 4 0 1758 0 1 604 1 0 115 3 1 5 1 0 635 0 3 973 0 1 598 0 4 247 2 1 137 chain 33912 chr6 171115067 + 167500002 167500395 L1P1 4361 - 3797 4190 77750 393 chain 4061 chr6 171115067 + 167521000 167521080 MADE1 96 + 0 96 206471 46 19 35 15 chain 28681 chr6 171115067 + 167530892 167531202 AluYg6 310 - 0 310 90404 310 chain 23425 chr6 171115067 + 167540168 167540536 THE1C 375 + 0 375 113503 68 0 14 9 13 0 16 7 15 47 32 29 96 0 2 54 1 0 25 chain 4959 chr6 171115067 + 167549307 167549370 MER58A 224 + 145 207 195591 28 1 0 34 chain 18763 chr6 171115067 + 167597475 167597708 L1PA5 6144 - 8 241 130789 131 7 0 10 0 7 85 chain 3815 chr6 171115067 + 167604298 167604360 MER53 195 - 98 157 210160 16 2 0 28 1 0 15 chain 24410 chr6 171115067 + 167637912 167638212 AluSp 311 + 7 305 108025 117 0 1 169 3 0 11 chain 12091 chr6 171115067 + 167640225 167640373 LTR8 732 + 584 732 151831 148 chain 43464 chr6 171115067 + 167656023 167656532 HERVL-int 5654 - 1887 2398 64853 353 0 2 156 chain 465059 chr6 171115067 + 167672094 167678261 L1PA8 5853 + 50 5853 8217 15 8 6 11 60 26 54 9 10 130 18 6 48 0 1 19 2 1 176 7 0 64 0 4 114 11 12 36 0 3 759 311 0 280 0 6 700 0 1 4 1 0 298 0 4 50 1 0 19 4 0 7 6 0 15 0 4 934 0 1 129 1 0 218 1 0 794 2 0 14 2 0 106 1 0 41 7 9 384 2 1 44 2 0 34 0 1 39 1 0 7 1 0 51 2 1 19 1 0 93 chain 33342 chr6 171115067 + 167728056 167728517 MER4A1 472 + 30 470 78669 239 28 7 194 chain 25772 chr6 171115067 + 167745164 167745511 MER57A1 433 + 83 433 101005 190 15 17 134 0 1 8 chain 192264 chr6 171115067 + 167745930 167747997 L1PA2 6032 - 1504 3570 19844 1966 1 0 100 chain 135921 chr6 171115067 + 167747997 167749471 L1PA2 6032 + 4557 6031 26832 1474 chain 9588 chr6 171115067 + 167777724 167777907 MER53 195 - 0 195 162646 46 20 19 22 23 36 72 chain 18773 chr6 171115067 + 167784348 167784581 L1PA5 6144 + 5903 6136 130761 85 0 7 10 7 0 131 chain 4686 chr6 171115067 + 167826443 167826512 MER39 703 + 554 625 198681 36 0 1 14 2 3 17 chain 24913 chr6 171115067 + 167859899 167860198 AluY 311 + 4 300 105252 122 3 0 174 chain 5035 chr6 171115067 + 167861984 167862044 MER49 923 + 820 881 194780 12 0 1 48 chain 55741 chr6 171115067 + 167894818 167895540 MER4E1 777 - 20 777 55275 102 1 2 103 1 9 104 0 1 88 0 19 54 0 2 254 2 6 13 chain 4796 chr6 171115067 + 168042096 168042233 HAL1-2a_MD 234 + 13 120 197408 16 34 7 16 1 10 25 15 0 12 0 3 18 chain 29654 chr6 171115067 + 168059226 168059536 AluYg6 310 - 0 310 86055 310 chain 24810 chr6 171115067 + 168075575 168075945 THE1B 368 - 0 368 105836 56 1 2 7 2 0 65 16 14 10 0 1 4 6 7 28 1 0 174 chain 8650 chr6 171115067 + 168090889 168090989 MER4A1 472 + 14 115 167472 95 0 1 5 chain 12839 chr6 171115067 + 168101479 168101626 AluSx1 309 + 126 273 148892 147 chain 26753 chr6 171115067 + 168120133 168120488 L1PA8 5853 + 5494 5847 97151 70 1 0 44 2 0 71 1 0 8 1 2 50 3 2 19 0 2 85 chain 130362 chr6 171115067 + 168153304 168154882 THE1A-int 1579 - 6 1579 28003 133 18 11 893 0 1 269 0 1 265 chain 26407 chr6 171115067 + 168154882 168155227 THE1A 353 - 0 353 98384 176 10 19 48 1 0 110 chain 24631 chr6 171115067 + 168173246 168173531 AluY 311 + 10 295 106819 285 chain 27065 chr6 171115067 + 168186060 168186362 AluYk4 311 + 0 302 96057 302 chain 29358 chr6 171115067 + 168193376 168193731 THE1A 353 + 0 353 87253 111 1 0 92 1 0 150 chain 24692 chr6 171115067 + 168198308 168198723 LTR3A 482 + 0 420 106489 21 2 0 35 0 6 47 0 1 5 0 1 63 9 8 16 45 55 9 10 0 12 1 0 68 0 1 53 0 1 4 1 0 14 chain 19814 chr6 171115067 + 168222703 168223063 MSTA 426 - 0 396 127769 10 5 0 99 1 21 53 39 39 45 25 51 18 5 0 60 chain 9669 chr6 171115067 + 168234804 168235103 L1PB1 5432 - 10 286 162247 12 9 8 11 1 0 21 1 0 24 2 0 15 1 0 4 2 0 15 94 82 6 0 2 42 0 1 11 2 0 9 5 1 12 chain 5125 chr6 171115067 + 168336727 168336822 MER33 330 - 143 219 193829 8 18 0 50 1 0 18 chain 58137 chr6 171115067 + 168379266 168380033 MER4E1 777 - 10 777 53908 101 0 1 114 4 5 216 0 1 37 0 2 97 1 0 61 1 0 99 11 8 25 chain 18655 chr6 171115067 + 168382558 168382893 THE1B 368 + 0 356 131068 40 1 16 8 0 1 41 8 6 62 1 0 21 58 66 95 chain 30300 chr6 171115067 + 168406186 168406626 MLT2A1 477 - 0 477 83912 33 27 61 43 6 7 129 0 1 29 1 5 137 4 1 31 chain 20330 chr6 171115067 + 168420536 168420812 AluSc 308 + 4 282 126138 91 0 1 52 24 25 109 chain 2919 chr6 171115067 + 168470040 168470075 MER58D 378 + 331 366 226719 35 chain 3981 chr6 171115067 + 168600318 168600362 MER4D1 891 + 286 330 207671 44 chain 52033 chr6 171115067 + 168649434 168650068 L1P3 4156 + 1106 1749 57602 141 0 6 22 9 10 345 0 2 117 chain 29102 chr6 171115067 + 168653441 168653743 AluYb8 318 - 16 318 88545 302 chain 35080 chr6 171115067 + 168653771 168654263 LTR19B 566 - 75 566 76078 37 5 4 110 1 17 22 2 0 5 21 9 120 0 1 152 3 0 14 chain 6006 chr6 171115067 + 168695132 168695199 L1PA5 6144 - 131 198 185183 67 chain 23619 chr6 171115067 + 168740052 168740391 THE1D 372 - 12 362 112479 105 1 0 62 25 27 91 0 10 55 chain 13388 chr6 171115067 + 168752757 168752920 MSTA 426 - 0 163 146758 163 chain 48249 chr6 171115067 + 168766784 168767376 LTR10C 591 + 0 591 60274 34 2 0 46 5 0 58 0 4 366 0 2 81 chain 2942 chr6 171115067 + 168814444 168814482 L1MB2 1706 - 12 50 226277 38 chain 2856 chr6 171115067 + 168820074 168820104 U2 167 + 0 30 227719 30 chain 10014 chr6 171115067 + 168824899 168825034 MER85 139 - 0 139 160513 40 0 10 13 6 0 76 chain 21956 chr6 171115067 + 168911899 168912249 THE1C 375 - 11 375 120401 14 1 0 19 1 2 4 1 0 6 0 1 130 0 4 7 8 6 32 27 31 51 0 8 49 chain 29303 chr6 171115067 + 168923759 168924067 AluYb8 318 - 10 318 87558 308 chain 18168 chr6 171115067 + 168957287 168957491 L1PA4 6152 - 11 218 132413 73 0 3 131 chain 14614 chr6 171115067 + 169022261 169022556 THE1D 372 - 78 372 142539 55 14 17 29 17 28 20 14 6 60 32 25 54 chain 83205 chr6 171115067 + 169030910 169031965 MER11C 1089 + 0 1073 42248 247 0 9 61 0 4 363 1 5 13 1 0 35 0 1 127 0 1 54 1 0 144 0 1 8 chain 27391 chr6 171115067 + 169034471 169034850 THE1C 375 + 0 375 95002 120 3 0 66 10 11 153 2 0 25 chain 38634 chr6 171115067 + 169077689 169078150 LTR7C 471 - 0 467 71241 33 0 1 147 0 4 178 0 1 103 chain 29235 chr6 171115067 + 169079190 169079610 HERVH-int 3825 - 358 781 87886 19 3 0 9 10 13 111 4 6 33 24 25 207 chain 54093 chr6 171115067 + 169082319 169083025 MER4E1 777 + 0 742 56298 23 0 4 223 0 1 78 0 19 59 0 1 24 0 1 104 0 8 103 9 10 5 0 1 78 chain 18985 chr6 171115067 + 169091443 169091713 L1PA8 5853 + 5589 5853 130142 19 2 0 74 1 0 8 1 0 63 8 7 42 1 0 51 chain 13509 chr6 171115067 + 169107617 169107770 L1PA4 6152 - 5 154 146329 47 4 0 102 chain 24546 chr6 171115067 + 169122876 169123220 THE1A 353 + 0 342 107278 79 12 11 15 6 5 92 1 0 55 0 1 84 chain 115119 chr6 171115067 + 169142883 169144381 LTR12C 1709 - 0 1640 32748 225 129 0 89 1 0 167 0 4 106 3 1 6 1 0 97 0 278 316 1 0 293 0 2 17 12 4 35 chain 11239 chr6 171115067 + 169143108 169143231 LTR12C 1709 - 94 217 141651 123 chain 19389 chr6 171115067 + 169149566 169149826 L1PB2 3958 - 120 379 128974 63 1 0 42 0 3 50 1 0 63 2 0 38 chain 4894 chr6 171115067 + 169152793 169152892 MER21A 919 - 719 808 196338 10 1 2 11 18 6 16 1 0 34 0 2 8 chain 109006 chr6 171115067 + 169170630 169172032 HERVL-int 5654 + 1725 3136 34440 28 0 2 39 6 12 99 0 2 14 25 21 73 0 1 260 1 2 472 0 1 385 chain 43288 chr6 171115067 + 169172233 169172775 MLT2A2 560 + 0 560 65069 36 0 8 453 0 10 53 chain 42968 chr6 171115067 + 169208978 169209881 MER41A 554 - 12 554 65450 69 376 14 152 0 1 306 chain 28636 chr6 171115067 + 169209057 169209382 L1PA7 6471 + 6130 6456 90572 247 0 1 78 chain 26394 chr6 171115067 + 169223164 169223445 AluYa5 310 + 30 310 98436 93 1 0 187 chain 25771 chr6 171115067 + 169245746 169246133 THE1C 375 - 1 375 101008 116 1 0 64 8 0 7 2 3 4 1 0 89 18 0 8 1 15 68 chain 3293 chr6 171115067 + 169260418 169260453 MER57B2 428 + 9 44 219133 35 chain 40187 chr6 171115067 + 169269244 169269764 L1PA8A 6298 + 5762 6290 69053 246 10 11 161 5 7 18 0 5 80 chain 39999 chr6 171115067 + 169312049 169312582 MLT2A2 560 + 15 560 69323 41 0 1 123 1 0 121 7 0 91 0 1 6 3 14 76 0 1 39 0 6 25 chain 37920 chr6 171115067 + 169325159 169325574 L1PA3long 6157 - 0 415 72250 415 chain 9396 chr6 171115067 + 169362578 169362707 MER85 139 - 0 139 163576 23 2 0 7 1 13 96 chain 103960 chr6 171115067 + 169375072 169376240 L1HS 6032 - 2940 4162 35638 305 0 1 450 0 52 92 0 1 321 chain 267442 chr6 171115067 + 169376240 169379173 L1PA3long 6157 + 3222 6156 15320 1263 1 0 1499 0 2 170 chain 8678 chr6 171115067 + 169389918 169390036 AluSc5 308 + 186 305 167315 41 0 5 65 4 0 8 chain 32459 chr6 171115067 + 169408020 169408477 MER4A1 472 - 0 471 80096 124 12 19 90 3 8 22 11 13 195 chain 28405 chr6 171115067 + 169414549 169414915 THE1C 375 + 8 375 91557 178 0 1 149 1 2 12 1 0 25 chain 38777 chr6 171115067 + 169432056 169432492 L1P1 4361 - 33 467 71043 23 1 0 155 1 0 256 chain 88371 chr6 171115067 + 169432492 169433467 L1PA2 6032 + 5055 6025 40235 265 6 1 704 chain 31970 chr6 171115067 + 169469913 169470352 MLT2A1 477 + 0 477 80905 168 1 5 29 1 2 180 7 0 6 10 50 37 chain 2724 chr6 171115067 + 169484015 169484049 MLT1I-int 1022 - 748 781 229845 11 1 0 22 chain 47202 chr6 171115067 + 169484321 169484903 LTR14C 587 + 0 587 61042 12 0 2 109 12 13 335 1 3 113 chain 42384 chr6 171115067 + 169486253 169486804 MER41A 554 + 0 554 66174 40 15 16 168 0 1 85 0 1 243 chain 35996 chr6 171115067 + 169498696 169499240 MLT2A2 560 + 0 560 74900 168 32 34 64 37 39 97 0 11 139 0 1 7 chain 17295 chr6 171115067 + 169502067 169502269 HERVL-int 5654 + 3849 4051 134797 202 chain 9663 chr6 171115067 + 169512363 169512497 MER4E1 777 + 623 770 162283 25 9 20 85 0 2 15 chain 54500 chr6 171115067 + 169547960 169548653 L1PA6 6164 + 5220 5893 56025 83 5 8 4 0 1 149 37 10 242 0 3 173 chain 44802 chr6 171115067 + 169579692 169580825 THE1A-int 1579 - 6 1154 31400 62 5 1 36 0 1 160 0 1 164 5 6 84 0 1 305 0 1 63 5 18 115 28 29 101 chain 119351 chr6 171115067 + 169580851 169582236 L1PA6 6164 + 4776 6161 31280 539 1 0 516 0 1 329 chain 16806 chr6 171115067 + 169582277 169582702 THE1A-int 1579 - 1154 1579 31400 425 chain 24850 chr6 171115067 + 169585568 169585862 AluY 311 + 11 311 105624 44 0 5 72 0 1 178 chain 62487 chr6 171115067 + 169595833 169596518 L1PA3long 6157 - 0 685 51685 685 chain 48568 chr6 171115067 + 169670060 169670721 MER4E1 777 + 0 759 60059 18 1 3 22 0 4 23 10 53 206 0 19 88 1 2 26 1 5 71 2 10 79 0 15 95 0 2 18 chain 8218 chr6 171115067 + 169677709 169677822 MER57-int 2662 + 2190 2304 169842 41 1 0 5 4 6 62 chain 22838 chr6 171115067 + 169698728 169699090 THE1C 375 - 12 375 116405 75 9 10 92 1 2 93 14 0 8 8 22 12 1 2 33 2 0 14 chain 5627 chr6 171115067 + 169709941 169710011 L1MA4 2864 + 2032 2103 188797 35 0 1 35 chain 23932 chr6 171115067 + 169710011 169710303 AluY 311 + 17 304 110733 101 6 0 14 0 1 171 chain 26572 chr6 171115067 + 169711849 169712189 THE1A 353 - 15 353 97752 97 9 8 122 1 0 111 chain 51084 chr6 171115067 + 169738413 169739068 PABL_A 660 - 0 660 58262 273 0 1 8 0 2 25 0 1 75 6 7 268 chain 42064 chr6 171115067 + 169743564 169744169 PRIMA4_LTR 623 + 0 623 66539 107 0 13 68 4 0 68 0 1 57 0 2 68 6 0 39 1 5 12 7 6 18 9 17 82 0 1 59 chain 74254 chr6 171115067 + 169746379 169747341 LTR5_Hs 974 - 0 974 46384 103 20 18 22 0 7 168 1 0 188 0 1 177 0 1 122 1 0 37 8 15 115 chain 527012 chr6 171115067 + 169748006 169754409 L1PA7 6471 - 6 6471 4501 6 3 0 88 0 1 50 6 0 6 1 6 181 1 0 21 2 0 5 0 2 247 9 10 227 0 26 239 1 5 710 5 6 79 0 2 563 1 0 482 1 0 241 0 10 254 0 1 363 0 2 602 1 0 465 0 5 406 3 0 324 0 19 147 5 6 7 1 0 247 4 5 399 chain 77567 chr6 171115067 + 169754743 169755889 MER11A 1151 - 0 1151 44707 14 1 0 153 0 1 41 0 1 20 0 1 37 19 1 20 43 0 26 25 1 145 5 6 82 4 3 55 6 7 91 5 6 146 4 0 64 1 0 52 8 0 24 0 99 55 chain 440880 chr6 171115067 + 169757647 169762561 L1PA4 6152 + 1226 6141 9030 45 0 1 1422 5 0 8 1 6 162 0 1 294 1 0 18 1 0 2880 0 1 77 chain 13726 chr6 171115067 + 169773432 169773702 L1PB1 5432 + 5178 5425 145523 42 2 1 15 1 0 45 1 0 14 25 14 17 9 6 15 2 0 25 1 0 20 1 0 12 1 0 13 1 0 8 chain 10787 chr6 171115067 + 169832854 169833149 THE1B-int 1605 + 18 260 33006 138 61 8 96 chain 117271 chr6 171115067 + 169833191 169834668 L1PA8 5853 - 0 1521 32033 93 1 0 19 2 1 10 6 16 25 16 14 66 2 0 47 1 0 551 0 2 275 1 0 50 0 1 64 1 4 31 0 4 31 0 1 140 5 16 6 0 20 34 chain 47866 chr6 171115067 + 169834670 169835979 THE1B-int 1605 + 260 1600 33006 81 8 7 84 0 25 41 29 26 6 0 1 429 1 0 4 0 1 45 0 15 44 0 2 34 14 5 242 5 6 242 chain 4624 chr6 171115067 + 169838105 169838256 L1PA16 3655 - 36 144 199367 16 25 0 12 1 7 7 3 0 13 36 15 38 chain 41799 chr6 171115067 + 169876150 169876730 LTR14B 630 + 0 630 66900 213 1 18 4 0 1 50 31 38 27 0 21 52 0 1 115 0 3 87 chain 3982 chr6 171115067 + 169881281 169881386 LTR12C 1709 + 654 718 207659 13 50 9 42 chain 7556 chr6 171115067 + 169881953 169882043 LTR12D 1347 + 1257 1347 173832 90 chain 86081 chr6 171115067 + 169883822 169885164 L1PREC2 3366 + 1771 3075 41129 122 2 3 72 2 3 442 8 11 123 2 3 161 1 0 41 2 0 54 2 1 29 59 50 19 5 0 16 7 5 26 4 0 11 22 8 35 3 1 44 3 1 7 1 0 4 1 0 12 chain 163416 chr6 171115067 + 169909101 169910887 L1PA4 6152 + 4366 6152 22889 1786 chain 7073 chr6 171115067 + 169916992 169917100 MSTA-int 1630 + 1523 1618 176932 88 13 0 7 chain 74124 chr6 171115067 + 169999485 170000303 L1P1 4361 - 846 1663 46090 477 1 0 340 chain 95280 chr6 171115067 + 170000303 170001380 L1P1 4361 + 873 1952 38011 856 0 2 221 chain 9956 chr6 171115067 + 170008252 170008438 L1PB3 3668 + 3294 3457 160801 15 33 10 64 8 8 66 chain 22830 chr6 171115067 + 170012245 170012527 AluYc3 301 + 0 275 116444 113 1 2 120 8 0 40 chain 51875 chr6 171115067 + 170019468 170020210 MER4E1 777 - 0 732 57697 123 1 2 74 9 6 21 1 9 137 6 5 72 8 12 63 21 2 206 chain 33066 chr6 171115067 + 170022017 170022449 MER4A1 472 + 0 432 79103 53 1 0 345 10 11 23 chain 58840 chr6 171115067 + 170075516 170076255 MER4E 760 - 8 760 53494 273 0 2 12 12 16 70 0 3 10 2 4 128 0 1 215 0 1 17 chain 5818 chr6 171115067 + 170076261 170076326 MSTB 430 + 334 399 186974 65 chain 57965 chr6 171115067 + 170078686 170079444 MER4E 760 + 0 760 53993 24 2 0 127 26 29 152 10 9 28 0 2 389 chain 4663 chr6 171115067 + 170079444 170079501 MSTB-int 1649 + 1567 1624 198931 57 chain 19847 chr6 171115067 + 170086779 170087041 L1MA4 2864 + 2388 2651 127663 28 0 1 61 0 1 18 3 2 152 chain 72852 chr6 171115067 + 170097097 170098074 LTR13 1007 + 0 1007 47094 381 4 5 55 1 0 5 1 2 92 0 2 86 2 1 42 12 14 22 0 4 67 15 26 11 0 1 92 0 5 39 13 17 21 1 2 15 chain 20206 chr6 171115067 + 170130708 170130944 AluY 311 + 0 233 126511 57 4 0 75 0 1 100 chain 491901 chr6 171115067 + 170132436 170138756 L1PA8A 6298 - 7 6270 7276 99 8 9 37 1 0 57 0 2 5 0 3 507 1 0 927 0 3 498 1 0 24 18 17 232 1 0 423 1 7 36 2 0 259 6 8 338 1 0 222 0 6 61 39 1 58 0 2 94 1 0 60 1 4 313 0 1 600 11 10 144 1 0 83 2 0 15 7 16 29 0 4 36 5 10 231 22 23 180 0 6 156 1 0 3 1 0 10 2 1 14 2 0 79 6 0 7 27 26 30 1 0 8 63 53 15 2 0 8 5 4 7 1 0 12 2 1 9 2 1 18 20 10 20 3 0 20 32 21 18 1 0 6 6 0 6 chain 4600 chr6 171115067 + 170153649 170153714 MER41A 554 - 88 153 199636 8 1 0 30 1 2 25 chain 28040 chr6 171115067 + 170156932 170157287 THE1A 353 - 0 353 92854 151 1 0 92 1 0 110 chain 111482 chr6 171115067 + 170215001 170216735 L1PB1 5432 - 9 1694 33815 4 1 0 15 1 0 12 1 0 22 1 0 24 2 0 14 9 6 18 25 13 15 1 0 43 1 0 16 2 1 27 0 3 12 85 75 17 0 9 238 43 27 105 0 2 75 3 2 117 12 15 149 0 1 232 1 3 83 23 5 112 0 1 9 1 0 163 chain 29524 chr6 171115067 + 170219301 170219710 MER4A1 472 + 40 472 86550 186 5 26 78 0 1 4 1 0 56 12 14 67 chain 77451 chr6 171115067 + 170220676 170221714 MER4-int 2692 + 1649 2692 44756 130 5 16 95 0 2 58 1 0 123 12 13 44 0 2 15 21 9 47 7 6 46 0 1 17 2 0 9 2 6 231 1 0 134 0 1 38 chain 8487 chr6 171115067 + 170225846 170225957 L1PBa 3878 - 3286 3397 168368 26 0 1 41 1 0 43 chain 3438 chr6 171115067 + 170244443 170244486 L1PA8 5853 + 5810 5853 216434 43 chain 14607 chr6 171115067 + 170247471 170247791 MSTA 426 + 28 405 142557 55 47 71 62 37 34 45 22 58 52 chain 133274 chr6 171115067 + 170256026 170257780 SVA_A 1864 - 0 1836 27379 584 43 0 35 2 0 37 2 110 72 6 4 64 0 73 38 3 0 75 3 0 7 0 2 67 17 14 60 8 5 90 39 0 28 3 0 471 chain 2800 chr6 171115067 + 170256610 170256653 SVA_A 1864 - 805 842 63476 1 3 0 35 3 0 1 chain 2240 chr6 171115067 + 170257239 170257278 SVA_A 1864 - 1258 1297 77295 39 chain 19907 chr6 171115067 + 170260732 170261088 THE1D 372 + 0 371 127456 56 0 1 54 0 1 48 75 87 36 8 10 47 1 0 31 chain 32910 chr6 171115067 + 170274126 170274617 L1MA2 4263 - 158 636 79352 36 1 0 9 10 3 89 14 12 95 1 0 51 4 1 6 0 2 5 2 0 58 0 1 60 0 1 14 1 0 35 chain 2363 chr6 171115067 + 170385241 170385293 L1ME1 1623 - 646 691 234678 15 11 4 26 chain 20760 chr6 171115067 + 170385843 170386099 L1P1 4361 + 4088 4341 124753 63 2 1 153 1 0 23 2 1 12 chain 17136 chr6 171115067 + 170519223 170519509 THE1C 375 + 84 375 135217 23 7 8 10 3 0 60 1 0 44 15 20 34 9 11 22 0 1 58 chain 22674 chr6 171115067 + 170586218 170586488 AluY 311 + 0 301 117193 51 0 30 51 0 1 168 chain 29352 chr6 171115067 + 170609177 170611528 THE1C 375 - 0 375 87281 26 1 0 88 1 0 76 1974 0 185 chain 13104 chr6 171115067 + 170609371 170609554 THE1C 375 - 191 373 147830 93 15 0 8 0 14 67 chain 14032 chr6 171115067 + 170611151 170611328 THE1C 375 - 0 176 144454 25 1 0 151 chain 455508 chr6 171115067 + 170644149 170650324 L1PA8 5853 - 8 5744 8559 85 1 0 19 2 1 52 2 1 5 1 0 74 2 0 44 1 0 136 0 1 67 0 2 161 1 2 107 2 0 79 0 2 15 0 5 467 0 13 135 0 3 363 1 0 338 5 6 63 6 8 16 1 2 49 1 0 153 0 1 156 1 0 89 0 1 132 0 1 32 0 4 47 4 0 26 1 0 567 0 6 19 0 1 11 0 4 175 4 6 62 0 2 3 12 0 17 0 4 175 0 14 227 0 1 22 179 1 27 305 5 5 1 0 699 4 2 41 1 4 146 9 11 19 5 9 63 0 1 173 0 1 51 15 3 9 1 0 4 3 1 50 3 2 76 0 4 50 chain 12598 chr6 171115067 + 170651071 170651215 MLT2A1 477 - 115 259 149849 144 chain 281659 chr6 171115067 + 170659892 170663730 L1PA11 4918 + 34 4391 14555 7 0 5 32 10 7 27 0 1 4 2 0 5 6 6 40 14 13 32 2 0 5 2 1 58 0 2 71 15 5 46 6 10 318 0 1 145 0 6 40 0 1 486 2 1 11 4 8 115 0 6 45 1 0 9 6 10 200 4 1 116 0 30 90 0 14 63 3 1 76 7 4 32 2 4 6 0 9 26 0 5 203 21 0 50 1 0 4 6 2 283 18 476 30 6 20 28 11 19 518 0 1 37 1 0 87 0 1 135 0 5 38 0 4 95 10 0 65 chain 2437 chr6 171115067 + 170693855 170693906 MER58C 217 + 63 111 233899 20 4 3 14 2 0 11 chain 25047 chr6 171115067 + 170731630 170731940 AluY 311 + 0 305 104558 123 1 0 10 13 9 163 chain 28597 chr6 171115067 + 170777875 170778181 AluYb8 318 - 12 318 90747 306 chain 6740 chr6 171115067 + 170800352 170800433 MLT1B 390 + 270 351 179396 81 chain 24697 chr6 171115067 + 170837167 170837442 L1PA4 6152 - 206 481 106452 275 chain 2821 chr6 171115067 + 170883714 170883750 L1MC5 759 - 325 360 228437 22 1 0 13 chain 83911 chr6 171115067 + 170896996 170898156 MER4-int 2692 - 0 1200 41949 196 4 16 128 0 1 18 34 9 186 4 18 41 0 5 62 1 0 120 0 2 110 1 0 51 1 34 14 1 2 95 0 4 69 5 0 19 chain 43110 chr6 171115067 + 170899217 170899729 MER9a2 513 - 2 513 65279 35 14 13 463 chain 42235 chr6 171115067 + 170902168 170902665 MER9a3 513 - 0 499 66355 133 0 2 364 chain 260008 chr6 171115067 + 170902678 170905803 HERVK9-int 4720 - 0 4505 15697 108 0 4 147 0 4 66 2 1 58 0 1 84 1 3 773 1 419 33 0 28 345 5 7 219 0 924 161 4 1 528 0 1 590 chain 23775 chr6 171115067 + 170937753 170938290 L2c 621 + 100 615 111621 24 26 14 35 15 16 68 70 77 9 9 0 60 1 0 113 18 12 53 11 13 12 4 0 9 chain 512516 chr6 171115067 + 170953010 170959434 L1PA7 6471 - 3 6471 5920 9 2 0 126 12 13 251 1 0 431 0 4 16 1 0 14 0 1 254 1 0 457 1 2 194 2 0 52 0 2 129 0 35 124 0 5 251 0 1 95 4 2 162 4 3 144 3 7 187 3 0 74 13 11 6 0 7 299 0 4 12 4 1 680 2 3 458 0 1 243 0 1 261 5 0 534 20 14 228 0 1 4 1 0 20 7 8 59 1 8 141 10 7 148 2 3 63 3 2 196 chain 14717 chr6 171115067 + 170961718 170961884 L1PA4 6152 - 11 177 142210 166 chain 65534 chr6 171115067 + 170961884 170962606 L1PA4 6152 + 5252 5974 50322 722 chain 8592 chr6 171115067 + 170964516 170964614 L1PA5 6144 - 0 98 167770 98 chain 24779 chr6 171115067 + 170970877 170971186 L1PA8A 6298 - 123 428 106007 41 4 0 264 chain 22970 chr6 171115067 + 170979754 170980020 L1PA5 6144 + 5872 6142 115750 216 0 4 50 chain 9317 chr6 171115067 + 171002714 171002822 L1PA4 6152 + 6039 6152 163970 102 0 5 6 chain 19041 chr6 171115067 + 171002832 171003127 LTR39 781 + 177 474 130000 90 23 16 138 14 23 30 chain 57372 chr6 171115067 + 171014423 171015497 MER4E1 777 - 0 777 54301 217 0 4 6 9 7 28 3 25 148 311 0 137 1 0 4 7 5 155 1 0 24 6 0 17 chain 40490 chr6 171115067 + 171016778 171017431 LTR9B 643 - 0 643 68607 40 13 12 80 2 9 32 67 41 35 5 6 172 0 2 5 4 9 65 0 2 133 chain 3399 chr7 159138663 + 27688 27731 LTR54B 464 + 200 246 217090 19 0 3 24 chain 23998 chr7 159138663 + 28051 28350 AluY 311 + 0 295 110339 118 4 0 177 chain 47777 chr7 159138663 + 37879 38465 LTR10C 591 - 0 581 60634 20 1 2 58 10 4 497 chain 235076 chr7 159138663 + 47276 49832 L1PA3long 6157 + 3587 6143 17023 2556 chain 4915 chr7 159138663 + 50691 50752 MER66B 489 + 386 447 196119 61 chain 8553 chr7 159138663 + 58650 58760 MER30 238 + 131 238 168000 10 3 0 97 chain 26799 chr7 159138663 + 130581 130894 L1PA5 6144 + 5832 6143 96986 164 0 2 128 1 0 9 3 0 8 chain 27917 chr7 159138663 + 145911 146318 MER57A1 433 - 0 433 93295 13 0 1 97 19 22 17 1 22 189 9 10 62 chain 175264 chr7 159138663 + 146373 148842 MER57-int 2662 - 50 2563 21425 17 1 11 35 1 0 6 2 0 22 38 24 54 32 26 35 0 6 44 9 10 251 14 13 67 10 31 50 4 5 6 0 1 104 0 6 63 0 1 5 2 1 164 5 0 19 0 1 128 1 0 36 0 1 28 1 0 96 0 7 162 0 2 759 3 0 67 5 9 31 9 27 73 1 0 9 chain 6053 chr7 159138663 + 150877 151006 MER31B 477 - 334 477 184789 38 38 53 33 1 0 19 chain 10731 chr7 159138663 + 187987 188409 MER34C_ 573 + 35 509 157279 104 1 0 9 259 307 23 0 4 16 0 1 10 chain 53721 chr7 159138663 + 315074 316985 MER4E1 777 + 1 760 56527 15 2 1 185 0 12 38 1 0 289 6 5 4 0 1 24 0 1 69 1172 9 106 chain 4363 chr7 159138663 + 316058 316107 MER52C 1267 - 213 262 202414 49 chain 5395 chr7 159138663 + 395997 396119 HAL1-2a_MD 234 + 0 216 191040 41 1 25 17 0 91 15 4 1 6 9 0 6 9 0 14 chain 104146 chr7 159138663 + 433312 434450 L1PA2 6032 - 4 1139 35707 6 7 0 842 0 4 283 chain 23896 chr7 159138663 + 749004 749295 AluYf4 310 - 7 299 110924 89 12 13 190 chain 26794 chr7 159138663 + 763872 764247 THE1B 368 + 0 368 97000 172 1 0 24 8 0 18 0 1 87 16 17 49 chain 11548 chr7 159138663 + 771207 771394 MER30 238 + 0 196 154111 90 20 8 13 1 23 33 1 0 29 chain 49161 chr7 159138663 + 783578 784120 L1PA3long 6157 - 0 542 59629 542 chain 26215 chr7 159138663 + 784120 784403 L1PA3long 6157 + 5326 5609 99143 283 chain 71530 chr7 159138663 + 835925 836716 L1PA3long 6157 - 0 791 47683 259 1 0 369 0 1 162 chain 33696 chr7 159138663 + 843287 843667 L1PA5 6144 - 7 387 78098 380 chain 11124 chr7 159138663 + 984210 984457 L1MA3 4352 - 0 233 155715 21 3 0 3 1 0 14 11 10 16 1 0 6 2 1 13 15 13 14 9 5 45 1 0 4 0 1 62 1 0 5 chain 82478 chr7 159138663 + 1000308 1001266 LTR13A 966 - 0 966 42550 53 4 1 413 0 5 473 0 6 15 chain 163060 chr7 159138663 + 1076933 1079829 SVA_F 1814 + 25 1814 22934 191 1 0 91 1 0 576 1 0 15 451 0 50 3 18 215 667 0 623 1 0 10 chain 2745 chr7 159138663 + 1077809 1077841 SVA_F 1814 + 1138 1170 195408 32 chain 2642 chr7 159138663 + 1077841 1077874 SVA_F 1814 + 931 1105 133947 16 3 144 14 chain 2294 chr7 159138663 + 1077874 1077923 SVA_F 1814 + 914 978 110219 33 4 19 12 chain 16520 chr7 159138663 + 1077923 1078260 SVA_F 1814 + 914 1089 81867 34 0 15 11 79 1 34 99 0 80 chain 3699 chr7 159138663 + 1077968 1078047 SVA_F 1814 + 1023 1102 110219 79 chain 3886 chr7 159138663 + 1078081 1078164 SVA_F 1814 + 1136 1219 110219 2 2 1 75 0 1 4 chain 21658 chr7 159138663 + 1078563 1078799 SVA_F 1814 + 1040 1274 109546 137 1 0 10 1 0 87 chain 2688 chr7 159138663 + 1078852 1078884 SVA_F 1814 + 861 893 186381 32 chain 11605 chr7 159138663 + 1078884 1079176 SVA_F 1814 + 1005 1291 87028 165 4 0 11 1 0 93 1 0 17 chain 101584 chr7 159138663 + 1109022 1110098 SVA_F 1814 + 9 1278 36372 650 0 1 276 0 192 150 chain 3116 chr7 159138663 + 1127177 1127211 Tigger4b 360 - 246 280 222639 34 chain 14619 chr7 159138663 + 1164197 1164362 L1PA2 6032 + 5869 6032 142524 5 2 0 158 chain 157858 chr7 159138663 + 1185115 1187587 SVA_E 1901 - 5 1901 23617 143 6 0 608 1 0 123 758 191 14 1 0 672 1 0 145 chain 8627 chr7 159138663 + 1186108 1186252 SVA_F 1814 - 600 716 98120 27 1 0 8 36 10 4 1 0 67 chain 2687 chr7 159138663 + 1186144 1186180 SVA_F 1814 - 734 771 142493 33 0 1 3 chain 31727 chr7 159138663 + 1186252 1186694 SVA_F 1814 - 540 1126 81283 68 49 0 29 0 1 211 5 28 32 0 169 20 11 11 17 chain 2936 chr7 159138663 + 1186320 1186369 SVA_F 1814 - 784 897 98120 1 1 50 13 3 18 31 chain 28362 chr7 159138663 + 1200657 1201076 LTR7B 505 - 14 505 91724 37 14 13 79 1 0 82 29 0 3 0 93 71 0 10 103 chain 34939 chr7 159138663 + 1211040 1211709 LTR12F 595 + 6 595 76279 78 48 0 16 0 13 20 0 16 28 0 8 25 44 5 149 0 1 21 95 65 61 1 0 83 chain 23364 chr7 159138663 + 1237346 1237628 AluSz 310 + 3 285 113846 282 chain 13538 chr7 159138663 + 1246030 1246183 L1PA4 6152 + 5998 6151 146217 153 chain 56978 chr7 159138663 + 1319388 1320056 L1PA7 6471 + 5789 6459 54541 64 0 1 453 1 2 150 chain 4332 chr7 159138663 + 1321004 1321115 MER33 330 + 164 275 202803 18 33 32 40 3 4 17 chain 4445 chr7 159138663 + 1368082 1368137 LTR2C 499 + 444 499 201397 55 chain 35956 chr7 159138663 + 1610848 1612007 MER41A 554 - 8 554 74950 31 0 25 17 1 6 21 0 1 4 1 0 10 650 1 30 2 5 128 3 5 62 0 1 199 chain 15497 chr7 159138663 + 1610933 1611579 MER51B 395 + 0 395 139911 34 0 34 30 50 0 20 0 56 37 55 57 46 309 16 65 chain 24804 chr7 159138663 + 1638283 1638643 THE1C 375 - 0 357 105869 25 1 0 90 0 1 64 36 33 144 chain 29675 chr7 159138663 + 1692499 1692812 AluYb8 318 - 5 318 85917 313 chain 25426 chr7 159138663 + 1843200 1843552 LTR19A 502 - 115 502 102567 83 1 0 41 6 43 182 7 6 32 chain 24091 chr7 159138663 + 1860453 1860729 AluY 311 + 18 295 109789 114 0 1 162 chain 9538 chr7 159138663 + 1920889 1921016 MER85 139 + 0 139 162896 96 2 14 29 chain 7115 chr7 159138663 + 2016461 2016542 LTR12C 1709 - 976 1057 176649 81 chain 4471 chr7 159138663 + 2060830 2060883 L1MCa 1829 + 1115 1168 201104 53 chain 4978 chr7 159138663 + 2141936 2142175 HAL1-2a_MD 234 + 0 124 195394 6 3 0 9 6 0 17 7 1 10 6 0 32 17 0 11 78 0 16 8 9 13 chain 129623 chr7 159138663 + 2200745 2202237 SVA_B 1603 + 0 1601 28174 19 0 25 197 0 1 536 0 80 46 0 1 72 1 0 9 4 16 15 15 6 578 chain 42419 chr7 159138663 + 2223088 2223548 L1PA4 6152 + 5692 6152 66120 460 chain 8481 chr7 159138663 + 2299515 2299640 MER30 238 - 0 121 168401 48 3 0 35 1 2 30 2 0 6 chain 24405 chr7 159138663 + 2303352 2303648 AluSg7 307 - 13 307 108054 156 9 6 26 0 1 105 chain 163669 chr7 159138663 + 2306984 2309168 SVA_F 1814 + 9 1814 22851 668 229 0 259 0 1 10 177 15 39 1 0 10 1 0 166 2 0 10 1 0 322 0 16 289 chain 9992 chr7 159138663 + 2307661 2307881 SVA_F 1814 + 843 1037 121188 12 1 0 25 0 1 15 7 6 50 13 28 20 1 0 25 39 0 12 chain 1001 chr7 159138663 + 2307830 2307864 SVA_F 1814 + 625 659 172444 34 chain 2445 chr7 159138663 + 2308150 2308182 SVA_F 1814 + 1186 1219 228278 28 0 1 4 chain 2060 chr7 159138663 + 2308195 2308217 SVA_F 1814 + 893 915 197641 22 chain 3598 chr7 159138663 + 2308217 2308262 SVA_F 1814 + 865 911 193892 22 0 1 23 chain 4613 chr7 159138663 + 2308262 2308327 SVA_F 1814 + 664 769 184950 47 0 40 18 chain 11331 chr7 159138663 + 2337228 2337419 L1PB3 3668 + 3395 3566 154956 88 16 0 13 1 0 7 1 0 25 8 6 32 chain 162990 chr7 159138663 + 2341724 2343591 SVA_D 2077 + 22 2067 22941 6 1 0 227 0 1 640 12 54 10 0 1 25 0 2 14 0 52 49 1 79 206 0 1 4 9 8 453 0 1 189 0 2 21 chain 25815 chr7 159138663 + 2349085 2349378 AluSp 311 + 1 294 100811 293 chain 24462 chr7 159138663 + 2383973 2384262 AluY 311 + 9 298 107746 289 chain 6405 chr7 159138663 + 2392044 2392184 MER44A 345 + 110 257 181991 8 20 0 50 0 8 29 16 32 6 0 3 11 chain 28926 chr7 159138663 + 2424997 2425307 AluYf4 310 + 0 310 89344 310 chain 78773 chr7 159138663 + 2429041 2430007 LTR5_Hs 974 - 0 974 44162 103 20 18 18 5 11 52 0 2 302 0 1 178 0 1 288 chain 3424 chr7 159138663 + 2442737 2442775 MIRb 242 - 136 174 216678 38 chain 16152 chr7 159138663 + 2455017 2455219 Tigger1 2417 - 110 316 137894 53 1 0 30 0 5 118 chain 2897 chr7 159138663 + 2459524 2459557 L1MB3 1562 - 141 174 227081 33 chain 75023 chr7 159138663 + 2468022 2468894 MER11D 897 - 0 897 46006 43 4 3 73 0 1 161 0 23 70 0 2 521 chain 23982 chr7 159138663 + 2512181 2512459 AluY 311 + 20 298 110430 112 0 1 148 1 0 17 chain 160276 chr7 159138663 + 2573125 2574911 SVA_E 1901 - 0 1901 23297 5 1 0 591 0 49 128 0 77 36 0 1 48 0 1 38 3 0 91 2 0 19 1 0 491 3 0 181 3 0 145 chain 22765 chr7 159138663 + 2761090 2761366 AluY 311 + 22 299 116752 110 0 1 166 chain 545628 chr7 159138663 + 2783194 2789305 L1PA4 6152 + 10 6151 1994 127 1 15 178 0 3 243 1 0 131 1 2 2017 3 0 105 0 5 700 1 0 263 1 0 141 0 1 285 3 0 59 0 11 60 0 4 1791 chain 6075 chr7 159138663 + 2793983 2794080 L1MD2 1676 - 831 928 184610 13 3 5 9 1 0 33 1 0 37 chain 29066 chr7 159138663 + 2828766 2829068 AluYa5 310 - 8 310 88691 302 chain 3207 chr7 159138663 + 2849235 2849273 MER66B 489 + 295 333 220824 38 chain 9583 chr7 159138663 + 2866746 2866859 L1MB5 1630 + 1357 1469 162678 35 1 0 77 chain 42049 chr7 159138663 + 2885080 2885605 L1PB1 5432 - 892 1419 66560 334 0 2 191 chain 19912 chr7 159138663 + 2888898 2889258 THE1B 368 + 0 357 127431 82 8 9 16 25 16 55 33 26 6 0 4 10 11 19 114 chain 10754 chr7 159138663 + 2901209 2901342 MER2 342 - 50 183 157182 133 chain 6977 chr7 159138663 + 2929822 2929903 L1PA17 2846 - 330 411 177627 81 chain 2793 chr7 159138663 + 2977148 2977181 MIR 256 - 112 145 228819 33 chain 12310 chr7 159138663 + 2990956 2991110 LTR8 732 + 0 156 150971 27 0 2 127 chain 6819 chr7 159138663 + 3021407 3021642 MLT2B2 565 + 4 255 178807 63 0 3 11 138 151 23 chain 41433 chr7 159138663 + 3055803 3056639 MER41A 554 + 2 554 67375 89 1 2 33 3 17 155 0 8 124 307 0 124 chain 15880 chr7 159138663 + 3057088 3058179 MER41C 542 + 15 503 138708 28 6 7 131 850 246 76 chain 15017 chr7 159138663 + 3068979 3069177 L1PA8 5853 + 5650 5845 141273 34 1 0 56 2 1 19 1 0 85 chain 12633 chr7 159138663 + 3069587 3069753 L1PA8 5853 + 5682 5845 149717 11 1 0 47 2 1 19 2 1 84 chain 10257 chr7 159138663 + 3113258 3113385 MER85 139 + 0 137 159337 89 0 10 38 chain 556364 chr7 159138663 + 3161180 3167324 L1PA3long 6157 + 0 6157 688 951 0 4 62 0 8 297 0 1 1268 1 0 2716 0 1 849 chain 42628 chr7 159138663 + 3198636 3199181 MER41A 554 - 0 554 65867 10 0 7 236 0 1 107 1 0 4 6 7 107 0 1 74 chain 32272 chr7 159138663 + 3199800 3200231 MLT2A1 477 + 0 477 80405 169 4 1 8 0 1 24 0 1 55 5 18 108 4 0 14 3 41 37 chain 25509 chr7 159138663 + 3202427 3202752 THE1B 368 + 0 341 102180 42 1 16 118 1 0 93 0 2 70 chain 26495 chr7 159138663 + 3226783 3227128 L1PA8 5853 - 0 338 98064 93 1 0 16 1 0 54 1 0 11 2 1 69 2 0 45 1 0 49 chain 36503 chr7 159138663 + 3233695 3234205 LTR61 567 - 2 567 74234 175 8 50 118 4 0 127 0 3 5 9 6 11 1 17 27 0 1 25 chain 10710 chr7 159138663 + 3234291 3234437 MER74A 558 - 30 171 157375 41 1 0 5 0 1 36 5 0 58 chain 5554 chr7 159138663 + 3244037 3244150 MSTA 426 - 243 380 189524 13 20 0 9 8 52 63 chain 7920 chr7 159138663 + 3252999 3253091 MER50 708 + 562 654 171525 92 chain 28456 chr7 159138663 + 3254324 3254730 MER57A1 433 + 0 410 91354 246 0 1 25 48 50 41 0 1 46 chain 3308 chr7 159138663 + 3255042 3255082 MER57A1 433 - 393 433 218819 40 chain 17118 chr7 159138663 + 3277832 3278181 THE1B 368 - 12 368 135262 36 14 14 63 61 68 6 1 0 46 32 33 90 chain 5380 chr7 159138663 + 3278181 3278250 MIRb 242 - 121 188 191195 54 2 0 13 chain 44405 chr7 159138663 + 3299484 3300016 MER41A 554 + 21 554 63684 406 0 1 126 chain 19110 chr7 159138663 + 3301553 3301806 MER4B 649 - 355 649 129791 94 1 43 73 1 0 84 chain 38078 chr7 159138663 + 3302307 3302792 MER41A 554 + 0 490 72017 93 0 1 157 2 0 176 0 1 41 0 5 16 chain 18897 chr7 159138663 + 3317601 3317880 L1PA16 3655 + 2940 3201 130376 140 1 0 62 25 8 51 chain 15437 chr7 159138663 + 3318038 3318586 MER30 238 - 3 236 140086 102 2 0 5 336 23 103 chain 5076 chr7 159138663 + 3353311 3353398 L1MA8 2339 + 2121 2203 194331 32 6 7 36 6 0 7 chain 5878 chr7 159138663 + 3369802 3369877 L1MB8 1703 - 409 488 186392 69 0 4 6 chain 2844 chr7 159138663 + 3526712 3526776 MER58A 224 - 119 182 227955 13 13 15 30 3 0 5 chain 18543 chr7 159138663 + 3531914 3532146 AluY 311 + 70 300 131379 62 0 1 156 3 0 11 chain 6947 chr7 159138663 + 3596447 3596582 L1MA3 4352 + 4195 4317 177848 41 15 12 12 9 1 21 1 0 6 1 0 29 chain 68998 chr7 159138663 + 3617728 3618720 MER11A 1151 - 0 1151 48809 51 7 36 94 23 0 13 0 4 88 14 49 7 0 1 59 0 4 50 5 0 6 12 20 110 11 10 6 0 7 92 9 10 45 0 1 94 1 0 117 0 99 78 chain 234390 chr7 159138663 + 3641309 3643945 L1PA4 6152 - 1 2632 17071 5 2 0 767 1 3 419 1 0 119 4 0 888 0 1 192 1 0 237 chain 49563 chr7 159138663 + 3677880 3678426 L1PA4 6152 + 5605 6151 59347 546 chain 28948 chr7 159138663 + 3696371 3696678 AluYb8 318 - 11 318 89232 307 chain 4118 chr7 159138663 + 3769049 3769141 MER20 218 + 47 140 205670 36 30 31 26 chain 28828 chr7 159138663 + 3815197 3815507 AluYb8 318 - 8 318 89773 310 chain 29121 chr7 159138663 + 3819284 3819593 AluYb8 318 + 2 311 88450 309 chain 12591 chr7 159138663 + 3828197 3828365 MER30 238 - 0 196 149874 101 2 30 65 chain 23504 chr7 159138663 + 3828787 3829068 AluSp 311 - 19 300 113108 11 0 1 152 1 0 117 chain 239166 chr7 159138663 + 3852750 3855334 L1PA2 6032 - 8 2592 16820 2584 chain 89764 chr7 159138663 + 3855334 3856312 L1PA2 6032 + 2472 3450 39699 978 chain 55052 chr7 159138663 + 3890023 3890649 L1PA5 6144 + 5518 6143 55672 367 1 0 258 chain 22981 chr7 159138663 + 3907023 3907363 THE1B 368 - 0 360 115714 49 5 13 106 2 0 31 1 0 38 0 3 7 3 0 54 8 23 36 chain 20661 chr7 159138663 + 3985245 3985560 AluY 311 + 0 311 125099 63 4 0 69 30 31 43 2 1 4 0 1 69 2 1 29 chain 39292 chr7 159138663 + 4047937 4048443 LTR10D 510 - 0 510 70340 239 0 1 34 6 5 18 1 0 118 15 22 5 2 0 68 chain 23081 chr7 159138663 + 4078676 4078936 L1PA4 6152 + 5883 6143 115233 260 chain 24350 chr7 159138663 + 4092458 4092740 AluSg4 309 + 20 302 108375 282 chain 87610 chr7 159138663 + 4100041 4101000 L1PA3long 6157 - 767 1726 40532 959 chain 70039 chr7 159138663 + 4101000 4101759 L1PA3long 6157 + 5383 6142 48257 759 chain 3446 chr7 159138663 + 4107920 4107977 MIRb 242 - 93 146 216257 4 1 0 5 3 0 44 chain 43859 chr7 159138663 + 4113400 4114005 LTR71B 605 - 2 605 64375 196 14 0 44 4 3 13 0 1 182 17 28 115 0 1 20 chain 29551 chr7 159138663 + 4117148 4117517 THE1B 368 - 0 368 86410 200 1 0 168 chain 15534 chr7 159138663 + 4120316 4120499 L1PA4 6152 + 5968 6151 139787 183 chain 9003 chr7 159138663 + 4135505 4135629 LTR39 781 - 652 781 165576 87 13 18 24 chain 3566 chr7 159138663 + 4143600 4143638 MER58A 224 - 141 179 214212 38 chain 22655 chr7 159138663 + 4144971 4145236 AluSc 308 - 43 308 117301 265 chain 20160 chr7 159138663 + 4204738 4204974 AluSq2 311 + 30 267 126646 103 0 1 133 chain 58912 chr7 159138663 + 4233085 4233783 HERVL-int 5654 - 4956 5654 53447 698 chain 28642 chr7 159138663 + 4234101 4234510 MLT2A1 477 - 76 477 90553 9 6 0 69 1 0 5 4 0 112 13 11 21 3 7 26 0 1 140 chain 27109 chr7 159138663 + 4283061 4283408 THE1B 368 - 19 368 95904 119 1 0 12 5 9 40 1 0 169 chain 41554 chr7 159138663 + 4291696 4292159 L1PA4 6152 - 0 469 67218 10 0 6 453 chain 22908 chr7 159138663 + 4316387 4316652 AluSp 311 - 23 291 116072 6 0 3 259 chain 21117 chr7 159138663 + 4327781 4328019 L1PA3long 6157 - 0 238 123504 238 chain 21409 chr7 159138663 + 4330425 4330770 THE1B 368 + 2 351 122478 166 2 1 11 18 25 4 1 0 4 0 1 14 23 21 102 chain 24768 chr7 159138663 + 4334795 4335151 THE1A 353 - 0 353 106068 228 18 17 12 1 0 48 1 2 33 2 0 13 chain 65008 chr7 159138663 + 4335631 4336429 L1PA7 6471 - 1 799 50573 408 5 0 266 0 3 72 0 3 15 4 3 28 chain 129299 chr7 159138663 + 4352585 4354129 LTR12C 1709 - 0 1709 28243 481 7 11 99 1 158 28 0 3 92 1 0 259 10 9 385 0 2 164 0 1 17 chain 3541 chr7 159138663 + 4361446 4361502 L1MB7 1623 + 733 786 214685 40 4 1 12 chain 4641 chr7 159138663 + 4369223 4369278 MLT1A0 366 + 250 305 199182 55 chain 41638 chr7 159138663 + 4373432 4373972 MER41A 554 + 5 554 67108 387 5 8 134 0 6 14 chain 48972 chr7 159138663 + 4375069 4375687 LTR10C 591 - 0 591 59772 78 1 3 15 0 1 231 30 0 263 chain 3502 chr7 159138663 + 4380845 4380882 MLT2A2 560 - 0 37 215350 37 chain 9059 chr7 159138663 + 4391406 4391506 L1PA3long 6157 + 6057 6157 165264 100 chain 22189 chr7 159138663 + 4399280 4399527 L1PA5 6144 + 5897 6144 119406 247 chain 2620 chr7 159138663 + 4413626 4413654 MER82 654 - 460 488 231425 28 chain 4384 chr7 159138663 + 4415558 4415641 MER41B 635 + 165 272 202154 47 10 23 10 1 12 15 chain 5466 chr7 159138663 + 4421515 4421587 MLT1C 463 - 35 107 190342 72 chain 8828 chr7 159138663 + 4424558 4425070 L1PB1 5432 + 5236 5420 166502 41 313 5 14 3 0 6 16 6 19 26 22 21 1 0 21 1 0 13 1 0 16 chain 71022 chr7 159138663 + 4429233 4430033 SVA_D 2077 - 2 851 47918 674 9 8 4 0 1 31 0 49 82 chain 23005 chr7 159138663 + 4434890 4435233 THE1D 372 + 0 357 115599 72 1 11 82 42 46 146 chain 24669 chr7 159138663 + 4441328 4441657 THE1C 375 - 41 368 106619 136 11 5 11 0 3 91 0 1 80 chain 40993 chr7 159138663 + 4442220 4442765 MLT2A2 560 - 0 560 67918 6 0 4 137 3 14 120 0 1 98 13 12 168 chain 9658 chr7 159138663 + 4444417 4444556 MSTA 426 + 8 143 162306 90 10 7 26 1 0 12 chain 23407 chr7 159138663 + 4444570 4444930 THE1B 368 - 0 368 113613 128 1 0 8 1 0 18 1 5 9 0 1 5 2 4 21 1 0 99 17 23 34 2 0 13 chain 5506 chr7 159138663 + 4463701 4463764 LTR45B 484 - 20 83 189983 63 chain 209203 chr7 159138663 + 4479938 4482236 L1PA3long 6157 - 9 2311 18549 137 7 11 2154 chain 7512 chr7 159138663 + 4488899 4488992 MER74B 573 + 179 272 174083 93 chain 36597 chr7 159138663 + 4521074 4521546 L1PA8 5853 + 5384 5853 74101 81 0 4 95 1 0 44 2 0 74 1 0 5 2 1 52 2 1 19 5 4 89 chain 40750 chr7 159138663 + 4528419 4528933 L1PA7 6471 + 5936 6465 68237 36 16 38 127 1 0 321 6 0 7 chain 27183 chr7 159138663 + 4534175 4534480 AluYf4 310 + 0 304 95653 208 1 0 96 chain 127882 chr7 159138663 + 4535575 4537120 LTR12C 1709 - 0 1709 28601 481 7 11 99 1 158 123 1 0 259 10 9 131 0 1 239 1 2 12 0 2 35 1 2 145 chain 16889 chr7 159138663 + 4541593 4541916 THE1C 375 - 40 375 135867 81 44 54 18 6 9 36 31 30 107 chain 53512 chr7 159138663 + 4547393 4548050 L1PA7 6471 - 4 662 56672 150 20 21 487 chain 3411 chr7 159138663 + 4552759 4552795 MLT2D 439 + 403 439 216915 36 chain 2980 chr7 159138663 + 4572712 4572745 MSTC 436 - 1 34 225439 33 chain 21559 chr7 159138663 + 4573195 4573524 THE1B 368 + 0 356 121929 42 2 17 110 1 0 15 46 59 113 chain 41747 chr7 159138663 + 4579285 4579801 PABL_A 660 + 82 599 66967 186 0 1 330 chain 19056 chr7 159138663 + 4581369 4581727 THE1B 368 + 3 368 129952 102 18 19 53 59 66 63 14 13 49 chain 3338 chr7 159138663 + 4588095 4588130 MIR 256 - 144 179 218258 35 chain 89266 chr7 159138663 + 4595530 4596622 L1PA10 4194 - 33 1119 39902 11 1 0 33 4 1 407 9 8 584 1 0 42 chain 31411 chr7 159138663 + 4610252 4611129 MLT2A1 477 + 0 477 81794 169 4 1 25 3 1 78 6 5 31 0 1 68 0 1 5 427 43 8 12 0 41 chain 25589 chr7 159138663 + 4619302 4619596 AluSp 311 + 8 302 101782 294 chain 75722 chr7 159138663 + 4622056 4623024 LTR5_Hs 974 - 0 974 45640 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 559250 chr7 159138663 + 4623804 4630560 HERVK-int 6823 - 241 6823 401 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 31 21 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 45 5 4 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 3680 1 0 7 2 0 372 1 0 439 1 0 313 1 0 16 1 0 28 2 0 205 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 5 3 11 1 0 5 chain 75720 chr7 159138663 + 4630560 4631528 LTR5_Hs 974 - 0 974 45642 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 559382 chr7 159138663 + 4632308 4639063 HERVK-int 6823 - 241 6823 394 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 31 21 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 45 5 4 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 3356 0 1 323 1 0 7 2 0 372 1 0 439 1 0 313 1 0 16 1 0 28 2 0 205 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 76067 chr7 159138663 + 4639063 4640031 LTR5_Hs 974 - 0 974 45436 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 24237 chr7 159138663 + 4645769 4646048 AluSp 311 + 10 289 109009 279 chain 17818 chr7 159138663 + 4648413 4648612 L1PA4 6152 + 5947 6146 133336 199 chain 10784 chr7 159138663 + 4657843 4658033 THE1D 372 + 145 336 157056 21 47 48 122 chain 22384 chr7 159138663 + 4662116 4662436 THE1D 372 + 2 319 118566 59 6 2 100 23 25 5 1 0 126 chain 143493 chr7 159138663 + 4662941 4664539 SVA_D 2077 + 0 2070 25562 25 4 0 813 0 123 31 1 0 32 0 51 29 0 303 663 chain 22739 chr7 159138663 + 4684284 4684568 AluSp 311 - 25 311 116872 43 5 7 236 chain 26701 chr7 159138663 + 4713209 4713517 AluYf4 310 + 0 304 97318 281 4 0 23 chain 5290 chr7 159138663 + 4729109 4729196 U13 108 + 0 86 192111 38 12 11 37 chain 3361 chr7 159138663 + 4737033 4737071 MER58A 224 + 41 79 217869 38 chain 104771 chr7 159138663 + 4832978 4834366 LTR12C 1709 + 0 1709 35554 193 0 1 91 15 16 37 0 43 83 0 3 6 22 17 33 6 7 36 15 12 52 1 0 20 0 278 184 2 1 5 2 0 106 0 4 31 0 2 60 6 7 293 5 4 84 chain 7896 chr7 159138663 + 4850820 4850920 HY3 101 - 1 101 171674 100 chain 24778 chr7 159138663 + 4885754 4886075 AluSc5 308 - 7 308 106012 22 3 0 63 17 0 216 chain 29176 chr7 159138663 + 4930049 4930817 MER4A 717 + 0 453 88171 20 1 2 83 0 2 16 9 0 91 11 12 105 11 9 17 316 9 62 3 2 23 chain 34640 chr7 159138663 + 4933322 4933766 MER41B 635 - 184 634 76703 197 4 9 116 0 1 36 1 0 37 0 1 53 chain 5634 chr7 159138663 + 4935670 4935776 MER74A 558 + 448 552 188729 31 27 25 48 chain 24279 chr7 159138663 + 4963549 4963828 AluY 311 + 8 288 108779 124 0 1 155 chain 9527 chr7 159138663 + 4983735 4983861 AluJr 308 + 112 241 162942 13 3 6 110 chain 3435 chr7 159138663 + 4986511 4986549 MSTA 426 - 27 65 216477 38 chain 3603 chr7 159138663 + 5019849 5019891 L1MC2 1988 - 0 42 213594 42 chain 35127 chr7 159138663 + 5060509 5060971 LTR2 463 - 0 463 76022 88 12 13 133 17 17 212 chain 425066 chr7 159138663 + 5060971 5066352 Harlequin-int 5206 - 0 5080 9418 238 5 8 400 1 2 266 321 0 48 3 25 397 0 1 139 5 0 293 2 0 838 0 7 10 0 1 778 0 1 176 1 0 4 0 1 280 2 1 115 1 2 168 1 0 227 1 7 291 3 0 10 1 0 100 3 0 53 0 1 37 7 0 132 1 0 23 chain 33890 chr7 159138663 + 5067891 5068347 LTR2 463 - 0 461 77794 65 37 38 74 0 4 280 chain 83183 chr7 159138663 + 5101876 5102915 MER11C 1089 - 26 1089 42260 192 5 6 127 0 1 38 1 0 5 0 4 114 27 0 7 9 37 211 0 4 62 0 14 241 chain 26112 chr7 159138663 + 5130055 5130372 PRIMA4_LTR 623 - 291 606 99571 92 1 0 51 0 1 92 2 0 79 chain 25312 chr7 159138663 + 5131707 5132009 AluYf4 310 - 15 310 103164 31 2 0 126 1 0 6 4 0 132 chain 4830 chr7 159138663 + 5141855 5141923 L1MA4 2864 - 52 118 197013 46 2 0 20 chain 18706 chr7 159138663 + 5143552 5143831 AluSq2 311 + 10 287 130927 101 10 6 15 22 24 131 chain 39807 chr7 159138663 + 5149738 5150218 MER9a3 513 - 0 480 69621 78 0 1 178 1 0 145 0 1 69 1 0 8 chain 23640 chr7 159138663 + 5172509 5172791 AluYk4 311 - 12 293 112357 23 2 1 257 chain 19385 chr7 159138663 + 5188981 5189325 MSTA 426 + 44 426 128989 26 1 2 29 29 54 7 4 0 42 5 3 29 8 6 54 4 24 106 chain 21155 chr7 159138663 + 5191091 5191347 AluY 311 + 15 285 123354 117 0 1 46 1 14 92 chain 5441 chr7 159138663 + 5203613 5203678 L1MC1 2226 + 1276 1341 190593 65 chain 9616 chr7 159138663 + 5220275 5220397 LTR61 567 - 381 501 162503 71 0 1 25 3 0 23 chain 24664 chr7 159138663 + 5378283 5378578 AluSp 311 + 14 307 106644 272 2 0 21 chain 3862 chr7 159138663 + 5382998 5383045 Tigger1 2417 + 2259 2306 209434 47 chain 28887 chr7 159138663 + 5424835 5425155 AluYb9 318 + 0 318 89503 63 2 0 255 chain 22484 chr7 159138663 + 5426437 5426710 AluSp 311 + 15 287 118086 14 1 0 258 chain 23253 chr7 159138663 + 5437804 5438091 AluSp 311 - 16 302 114428 17 2 1 268 chain 19970 chr7 159138663 + 5447703 5447947 AluSc 308 + 53 297 127231 65 0 1 152 1 0 26 chain 3631 chr7 159138663 + 5485156 5485197 MLT1C 463 + 57 98 213130 41 chain 24324 chr7 159138663 + 5603466 5603753 AluSp 311 - 20 310 108521 11 0 4 259 1 0 16 chain 21471 chr7 159138663 + 5604334 5604572 AluY 311 + 11 250 122247 121 0 1 117 chain 20519 chr7 159138663 + 5615165 5615393 AluY 311 + 82 310 125571 228 chain 34623 chr7 159138663 + 5623121 5623576 LTR2 463 + 0 463 76721 212 17 17 53 0 4 73 15 16 59 0 3 26 chain 23324 chr7 159138663 + 5627710 5627987 AluSp 311 + 6 283 114064 277 chain 25015 chr7 159138663 + 5637022 5637326 AluSp 311 + 8 310 104708 58 1 0 62 1 0 182 chain 19821 chr7 159138663 + 5656913 5657201 AluSg7 307 - 17 307 127749 152 7 8 81 27 28 21 chain 23488 chr7 159138663 + 5766210 5766505 AluSz6 309 + 4 299 113185 129 1 0 64 2 3 99 chain 122630 chr7 159138663 + 5775739 5777149 SVA_C 1631 + 46 1611 30185 11 25 3 155 2 0 611 0 179 606 chain 3970 chr7 159138663 + 5788316 5788437 Tigger2 2703 + 2577 2648 207847 8 0 12 23 62 0 28 chain 21699 chr7 159138663 + 5791547 5791830 AluSq4 311 + 11 298 121396 84 14 15 21 0 1 129 0 2 35 chain 3188 chr7 159138663 + 5832889 5832925 LTR17 781 + 290 326 221151 36 chain 16600 chr7 159138663 + 5833605 5833820 LTR12C 1709 + 941 1203 136672 126 6 53 83 chain 8139 chr7 159138663 + 5844107 5844375 L1MC1 2226 - 676 950 170291 16 6 11 18 116 120 32 15 12 65 chain 3035 chr7 159138663 + 5902517 5902569 LTR34 700 + 402 465 224292 11 1 0 5 4 16 31 chain 22866 chr7 159138663 + 5904303 5904583 AluSp 311 + 0 296 116252 89 0 16 191 chain 21923 chr7 159138663 + 5912270 5912514 SVA_A 1864 + 1612 1856 120535 244 chain 25095 chr7 159138663 + 5916433 5916736 AluSp 311 - 9 311 104319 195 1 0 107 chain 7617 chr7 159138663 + 5917486 5917581 L1MB2 1706 + 1417 1512 173431 95 chain 24881 chr7 159138663 + 5937050 5937561 MER51E 476 + 0 476 105455 6 0 3 95 65 39 15 26 10 122 0 12 25 6 0 7 7 13 25 20 15 12 0 4 12 2 0 19 5 0 42 chain 2935 chr7 159138663 + 5967589 5967685 MER21C 908 - 779 885 226419 30 46 49 6 0 7 14 chain 5670 chr7 159138663 + 6043916 6043995 HY3 101 - 2 80 188385 41 2 1 36 chain 21939 chr7 159138663 + 6058866 6059134 AluY 311 + 38 301 120464 85 1 0 3 4 0 175 chain 19571 chr7 159138663 + 6083815 6084077 AluY 311 + 2 291 128456 121 25 19 76 0 33 40 chain 7668 chr7 159138663 + 6092827 6092986 L1MA3 4352 - 0 145 173115 13 15 11 14 2 0 22 7 6 4 1 0 22 2 0 24 4 0 29 chain 7722 chr7 159138663 + 6112230 6112324 MSTC 436 - 342 436 172768 94 chain 11326 chr7 159138663 + 6152286 6152477 MER30 238 + 30 236 154978 13 0 1 50 3 6 7 4 0 9 22 37 83 chain 24759 chr7 159138663 + 6169214 6169507 AluSx 319 + 5 298 106116 293 chain 10365 chr7 159138663 + 6193159 6193274 L1PA3long 6157 + 6042 6157 158852 115 chain 4781 chr7 159138663 + 6214844 6214899 HY3 101 - 2 57 197558 55 chain 4030 chr7 159138663 + 6235460 6235517 L1M4c 1769 + 750 808 206924 26 2 3 29 chain 22662 chr7 159138663 + 6242088 6242389 AluSp 311 - 7 311 117258 61 9 8 140 7 11 84 chain 5486 chr7 159138663 + 6252371 6252441 L1MB3 1562 - 291 361 190156 70 chain 65873 chr7 159138663 + 6262721 6263480 SVA_A 1864 + 434 1864 50155 41 0 671 718 chain 5045 chr7 159138663 + 6321809 6321974 L1MD2 1676 + 449 568 194673 22 0 1 32 89 42 22 chain 90863 chr7 159138663 + 6326589 6327592 L1PA4 6152 + 5148 6151 39335 1003 chain 4363 chr7 159138663 + 6332963 6333016 L1MB3 1562 - 42 95 202409 53 chain 4849 chr7 159138663 + 6334090 6334164 THE1B 368 + 295 368 196794 11 7 6 56 chain 5494 chr7 159138663 + 6348295 6348360 MER101 471 + 406 471 190107 65 chain 8713 chr7 159138663 + 6350403 6350549 L1MB5 1630 + 1275 1419 167127 54 14 16 5 2 0 33 1 0 9 1 0 27 chain 24038 chr7 159138663 + 6351042 6351357 AluY 311 + 11 310 110122 132 31 15 152 chain 24468 chr7 159138663 + 6380276 6380548 AluY 311 + 28 301 107711 104 0 1 168 chain 25756 chr7 159138663 + 6395756 6396071 AluY 311 + 0 311 101055 133 14 10 168 chain 22799 chr7 159138663 + 6436939 6437209 AluSg7 307 - 23 293 116580 270 chain 22963 chr7 159138663 + 6455188 6455491 AluSc8 310 + 1 300 115794 47 5 6 16 7 0 38 0 1 14 2 0 9 0 3 165 chain 28524 chr7 159138663 + 6477652 6477986 L1PA5 6144 + 5802 6138 91081 187 0 1 53 0 1 94 chain 21292 chr7 159138663 + 6479751 6480032 AluSp 311 + 11 298 122891 18 1 0 26 0 1 10 0 7 186 8 7 32 chain 11221 chr7 159138663 + 6491027 6491185 MER51E 476 - 328 476 155344 118 11 1 29 chain 27458 chr7 159138663 + 6497951 6498250 AluYa5 310 + 12 310 94789 120 1 0 178 chain 23655 chr7 159138663 + 6521652 6521929 AluSp 311 - 29 311 112281 6 0 2 180 0 3 91 chain 3260 chr7 159138663 + 6529497 6529533 MLT1F1 559 + 355 391 219784 36 chain 2725 chr7 159138663 + 6530761 6530811 MSTB1 431 - 379 431 229793 25 6 8 19 chain 76113 chr7 159138663 + 6555833 6557069 LTR13_ 950 + 0 950 45415 118 0 4 270 4 5 28 5 28 415 314 0 82 chain 25189 chr7 159138663 + 6584431 6584730 AluY 311 + 1 295 103800 132 1 0 6 4 0 156 chain 14924 chr7 159138663 + 6586023 6586217 AluSq2 311 + 108 301 141563 17 6 5 171 chain 6405 chr7 159138663 + 6603483 6603561 MLT1B 390 + 92 170 181986 78 chain 12167 chr7 159138663 + 6608176 6608321 LTR8 732 - 0 146 151546 17 0 1 128 chain 22041 chr7 159138663 + 6668868 6669147 AluSp 311 - 22 300 120064 145 4 3 130 chain 23556 chr7 159138663 + 6674409 6674704 AluSg 306 + 11 304 112815 255 2 0 38 chain 174795 chr7 159138663 + 6709868 6712087 SVA_D 2077 - 0 2053 21494 173 1 5 160 0 10 328 8 0 5 0 8 48 48 0 120 1 0 12 99 0 156 1 0 6 35 10 6 1 0 28 1 0 16 1 0 32 1 38 81 40 0 811 chain 2616 chr7 159138663 + 6710596 6710639 SVA_D 2077 - 820 863 94849 43 chain 4989 chr7 159138663 + 6710772 6710854 SVA_D 2077 - 1047 1128 94849 27 1 0 54 chain 23913 chr7 159138663 + 6810266 6810544 AluY 311 + 12 292 110845 120 0 1 128 0 1 30 chain 24182 chr7 159138663 + 6816675 6816979 AluSp 311 - 1 303 109312 182 1 0 3 1 0 117 chain 25734 chr7 159138663 + 6875869 6876177 AluSp 311 + 0 311 101143 91 0 3 217 chain 346461 chr7 159138663 + 6882001 6886085 HERVE-int 4064 - 0 4064 11712 463 2 1 124 1 0 73 2 0 892 2 0 141 6 0 265 5 4 566 1 2 63 0 2 657 4 1 523 7 0 287 chain 81054 chr7 159138663 + 6899865 6900880 LTR5A 1029 - 0 1029 43161 416 21 22 437 1 14 140 chain 17550 chr7 159138663 + 6901521 6901722 L1PA2 6032 - 2 203 134126 201 chain 21559 chr7 159138663 + 6901729 6901961 L1PA2 6032 + 5590 5822 121928 232 chain 346700 chr7 159138663 + 6910858 6914904 HERVE-int 4064 - 0 4064 11701 588 1 0 68 1 11 540 0 2 645 3 0 675 1 2 138 0 12 262 0 1 4 1 0 305 4 1 810 chain 81394 chr7 159138663 + 6923005 6924020 LTR5A 1029 - 0 1029 43011 416 21 22 437 1 14 140 chain 77726 chr7 159138663 + 6941627 6942594 LTR5_Hs 974 + 0 974 44647 50 9 12 337 3 2 57 0 4 311 0 1 200 chain 28648 chr7 159138663 + 6943421 6943831 LTR7 482 + 0 482 90525 69 8 46 109 3 4 18 17 49 95 0 1 91 chain 283123 chr7 159138663 + 6943833 6947447 HERVH-int 3825 + 0 3824 14459 181 10 12 19 4 15 149 0 4 155 14 9 26 1 0 10 1 0 12 32 22 4 1 0 13 3 0 25 1 0 30 2 0 11 1 0 17 21 0 9 0 1 5 2 1 49 1 0 137 0 1 181 0 2 126 15 0 459 4 31 239 0 1 62 0 10 352 1 2 681 16 18 39 0 210 230 1 0 38 0 2 224 chain 30387 chr7 159138663 + 6948214 6948623 LTR7 482 + 1 482 83704 68 8 46 109 3 4 30 0 32 75 1 2 115 chain 4450 chr7 159138663 + 6968472 6968540 MADE1 96 - 0 96 201338 40 4 32 24 chain 13093 chr7 159138663 + 6989484 6990034 HERVH-int 3825 - 0 550 14220 379 3 0 7 5 8 156 chain 41328 chr7 159138663 + 6990039 6990535 LTR2C 499 - 1 499 67501 63 1 0 182 1 0 72 2 5 65 0 1 110 chain 339259 chr7 159138663 + 6993189 6997270 HERVE-int 4064 - 4 4064 11916 658 2 0 1013 7 0 7 0 9 167 0 1 671 26 1 719 1 2 250 0 2 560 chain 75344 chr7 159138663 + 6998376 7001541 HERVH-int 3825 - 550 3825 14220 824 1 49 300 40 41 1214 0 1 66 2 1 21 1 2 26 2 1 5 0 1 21 12 11 35 22 1 17 4 21 13 49 1 14 0 114 142 1 0 333 chain 367960 chr7 159138663 + 7009624 7013923 L1PA4 6152 - 9 4311 11155 731 0 3 97 0 1 716 2 0 235 0 4 415 0 1 154 1 2 101 0 1 166 1 0 392 0 1 36 1 0 199 0 1 567 1 0 139 0 2 19 0 1 83 0 3 44 12 1 187 chain 148961 chr7 159138663 + 7013997 7015756 SVA_D 2077 - 7 2015 24762 669 9 0 11 13 22 30 0 127 156 1 2 5 1 0 10 0 2 39 0 1 6 9 46 27 2 1 76 0 40 163 0 40 205 0 3 327 chain 156413 chr7 159138663 + 7015809 7017632 L1P1 4361 - 2510 4360 23810 957 0 27 866 chain 30534 chr7 159138663 + 7026027 7026451 MER4A1 472 + 33 467 83365 67 0 2 118 33 35 140 0 2 52 0 4 14 chain 45162 chr7 159138663 + 7027989 7028546 LTR6B 557 - 0 557 62861 161 18 13 17 0 5 361 chain 125793 chr7 159138663 + 7031717 7034318 HERVS71-int 4705 - 2403 4650 29157 316 11 10 374 1 0 557 0 3 45 2 3 29 10 3 126 2 1 27 4 0 21 127 67 17 1 0 5 1 0 17 1 0 5 7 4 9 2 0 3 2 0 5 1 0 8 96 64 15 504 301 23 6 2 21 2 0 7 11 6 10 1 0 8 2 0 11 1 0 9 27 21 24 1 0 3 1 0 4 1 0 13 2 0 3 2 0 6 1 0 8 4 0 17 3 0 5 2 0 11 chain 73655 chr7 159138663 + 7041407 7042331 LTR5_Hs 974 - 0 974 46709 38 3 4 62 5 4 32 1 0 5 1 9 371 0 2 281 3 0 52 0 41 23 5 8 42 chain 535489 chr7 159138663 + 7045437 7051579 L1PA4 6152 - 0 6151 3521 318 3 0 141 0 2 965 0 7 54 0 2 311 0 4 2024 10 4 1083 0 1 506 1 0 392 0 3 334 chain 19646 chr7 159138663 + 7056476 7056770 L1PA15 4387 + 3981 4267 128265 123 1 0 27 7 6 48 1 0 22 4 0 10 1 0 50 chain 43014 chr7 159138663 + 7063465 7064084 L1PA11 4918 - 410 1021 65404 19 2 1 13 2 0 68 17 14 65 3 0 5 8 10 22 0 1 231 0 2 122 5 1 37 chain 189235 chr7 159138663 + 7081464 7083877 L1P3 4156 + 0 2403 20124 140 3 1 60 4 3 35 24 23 58 11 10 78 2 0 117 0 1 291 0 1 336 1 3 340 14 7 899 chain 3485 chr7 159138663 + 7086677 7086716 MER5A1 166 - 96 135 215597 39 chain 16493 chr7 159138663 + 7091515 7091810 MER21B 843 + 0 314 136949 27 10 11 44 0 6 6 54 67 53 1 0 100 chain 5113 chr7 159138663 + 7095233 7095307 MER3 215 + 145 215 193933 18 4 0 52 chain 33709 chr7 159138663 + 7110229 7110647 MER9a3 513 - 79 513 78081 124 0 2 13 0 1 6 2 1 35 7 21 231 chain 508469 chr7 159138663 + 7123085 7129367 L1PA7 6471 - 14 6471 6285 822 7 10 34 0 1 92 0 1 421 0 1 61 2 1 38 1 0 256 0 2 39 0 4 53 11 12 31 1 2 5 1 0 28 17 9 119 0 5 581 0 1 216 0 1 58 0 4 52 0 1 89 18 9 298 0 4 129 0 153 179 3 6 875 1 0 55 0 1 341 3 4 78 7 10 30 0 4 380 0 1 75 2 4 366 0 2 76 4 0 327 chain 26079 chr7 159138663 + 7144535 7144963 MER4A1 472 + 0 434 99712 177 19 23 6 4 0 115 0 1 26 52 57 29 chain 184544 chr7 159138663 + 7147314 7149869 MER4-int 2692 + 79 2692 20541 20 5 1 15 8 0 12 0 5 212 1 0 42 10 6 147 9 0 15 3 13 29 1 0 100 0 2 27 11 10 173 1 0 77 3 4 14 0 1 51 0 1 49 1 0 234 3 1 51 1 17 57 2 3 284 0 1 4 5 6 75 0 1 49 2 1 112 0 1 22 20 23 155 0 1 27 7 6 35 0 1 10 26 5 134 0 1 62 0 3 19 19 82 104 chain 12388 chr7 159138663 + 7149877 7150028 MER4A1 472 + 0 154 150679 49 1 0 76 0 4 25 chain 11492 chr7 159138663 + 7150100 7150260 MER4A1 472 + 288 451 154328 107 8 10 26 0 1 19 chain 20846 chr7 159138663 + 7157129 7157352 AluYb9 318 + 82 305 124476 223 chain 69272 chr7 159138663 + 7164790 7165561 L1PA4 6152 + 5378 6143 48696 634 6 0 131 chain 28474 chr7 159138663 + 7175518 7175891 THE1C 375 - 0 375 91289 26 1 0 154 0 2 6 1 2 185 chain 515553 chr7 159138663 + 7179253 7185378 L1PA6 6164 - 8 6160 5613 36 5 20 273 0 1 511 1 0 664 0 3 32 1 0 653 2 0 365 0 15 306 0 5 81 16 16 841 15 0 283 7 9 68 0 1 567 0 1 594 0 1 275 0 1 24 1 0 258 2 3 103 1 2 140 chain 58678 chr7 159138663 + 7193570 7194287 THE1A-int 1579 + 857 1574 53592 186 0 3 5 3 0 25 6 5 439 0 1 53 chain 107797 chr7 159138663 + 7201748 7202926 L1PA3long 6157 - 0 1179 34780 856 0 1 322 chain 92338 chr7 159138663 + 7202926 7203932 L1PA3long 6157 + 3974 4980 38837 1006 chain 5490 chr7 159138663 + 7213575 7213858 MLT1B 390 - 45 323 190132 54 203 198 26 chain 471186 chr7 159138663 + 7235695 7241208 L1PA5 6144 - 0 5576 7996 20 2 1 846 0 22 144 0 1 765 0 4 83 0 3 159 0 1 102 0 2 316 2 1 498 2 0 266 1 0 327 2 0 855 0 45 509 0 1 3 9 0 195 2 1 162 0 1 243 chain 135385 chr7 159138663 + 7251053 7253513 HUERS-P3b-int 2065 - 13 2052 26942 13 32 8 59 0 2 29 3 0 5 0 2 50 4 0 35 0 4 23 8 7 13 2 0 71 12 10 84 7 6 17 1 0 13 2 0 50 1 0 5 5 7 16 14 12 40 3 1 36 0 1 43 1 2 80 0 2 85 0 1 19 0 2 6 1 0 200 413 11 51 6 5 98 1 0 54 1 0 64 0 13 10 4 0 104 63 69 199 0 1 15 0 1 180 2 1 23 3 0 81 chain 5502 chr7 159138663 + 7281681 7281757 MER33 330 + 33 111 190025 53 1 3 22 chain 13775 chr7 159138663 + 7302823 7303019 MER30 238 + 6 235 145351 80 1 0 4 14 48 97 chain 376324 chr7 159138663 + 7336650 7341391 L1PA7 6471 - 39 6468 10871 347 0 1 200 0 1 262 1 0 84 28 3 523 0 16 46 157 0 832 0 1 280 1 0 206 0 1833 43 0 1 60 0 1 57 0 2 137 0 3 114 1 0 139 0 2 24 0 4 544 0 4 258 0 1 248 11 14 138 chain 8940 chr7 159138663 + 7338146 7338249 L1PA7 6471 - 1357 1460 165922 103 chain 3747 chr7 159138663 + 7338249 7338297 L1PA7 6471 - 1476 1522 211206 23 2 0 23 chain 26002 chr7 159138663 + 7347342 7347631 AluY 311 + 16 306 100003 111 1 2 177 chain 28855 chr7 159138663 + 7352703 7353030 L1PA4 6152 - 0 328 89644 8 0 1 319 chain 46204 chr7 159138663 + 7353108 7353612 L1PA4 6152 + 5326 5830 61845 504 chain 6521 chr7 159138663 + 7361875 7361953 MER34B 572 + 439 517 181076 78 chain 16848 chr7 159138663 + 7391428 7391699 MER4B 649 + 0 311 135989 24 1 0 7 3 1 15 1 2 69 27 27 12 0 42 112 chain 32054 chr7 159138663 + 7396114 7396478 L1PA4 6152 + 5781 6143 80772 217 2 0 145 chain 32450 chr7 159138663 + 7400943 7401339 L1PA7 6471 - 469 875 80111 32 0 1 267 0 2 69 4 11 24 chain 40019 chr7 159138663 + 7401339 7401819 L1PA7 6471 + 5985 6468 69293 65 0 1 85 1 3 329 chain 508346 chr7 159138663 + 7427672 7434024 L1PA7 6471 - 25 6471 6293 24 0 3 199 4 10 6 6 0 102 0 1 6 0 1 104 0 3 103 0 1 158 0 1 23 13 15 69 0 3 8 0 4 133 0 1 114 4 0 22 0 2 63 0 1 590 0 2 145 4 8 735 0 1 208 17 28 20 0 4 34 2 0 5 1 2 93 6 7 623 0 4 116 10 0 173 0 6 83 0 2 31 7 6 176 0 4 717 3 4 65 7 24 82 0 1 152 0 3 5 3 0 78 0 7 221 4 5 14 0 1 130 27 51 196 4 0 404 chain 100359 chr7 159138663 + 7501590 7504715 L1PB1 5432 + 19 2738 10087 33 6 19 372 0 1 163 0 1 19 1 2 19 318 0 94 0 14 217 1 0 89 137 0 333 0 1 7 0 10 22 4 9 102 0 3 897 0 3 42 3 15 18 0 1 22 0 5 79 0 1 15 21 0 91 chain 565410 chr7 159138663 + 7504723 7510751 L1HS 6032 + 0 6028 189 185 0 1 1073 1 0 4769 chain 105209 chr7 159138663 + 7510781 7514057 L1PB1 5432 + 2738 5417 10087 153 4 10 251 1 0 47 0 1 4 309 7 310 4 6 205 1 0 225 1 0 89 0 1 65 0 1 121 12 7 68 0 1 183 12 0 135 3 0 46 1 3 28 0 2 396 255 2 9 3 0 20 1 0 12 1 0 10 17 11 52 1 0 18 1 0 37 9 8 14 1 0 4 3 0 8 9 0 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 4 3 13 chain 7907 chr7 159138663 + 7517000 7517108 MER2 342 + 144 255 171598 72 2 5 34 chain 18363 chr7 159138663 + 7517278 7518087 LTR12C 1709 - 168 777 131901 31 352 306 44 41 0 42 67 32 16 80 2 136 chain 3749 chr7 159138663 + 7517545 7517587 LTR12C 1709 - 991 1033 211169 42 chain 5528 chr7 159138663 + 7517788 7517855 LTR12C 1709 - 798 865 148749 67 chain 4950 chr7 159138663 + 7517871 7517931 LTR12C 1709 - 880 940 148749 60 chain 12832 chr7 159138663 + 7562335 7562533 MER30 238 - 0 190 148920 48 3 0 81 25 19 6 0 1 35 chain 7679 chr7 159138663 + 7578762 7578853 MSTB1 431 - 0 91 173053 91 chain 314021 chr7 159138663 + 7583832 7587229 L1PA2 6032 + 2635 6032 12854 3397 chain 182642 chr7 159138663 + 7597781 7600371 L1PA13 3608 + 866 3486 20723 48 1 3 136 2 1 272 0 2 468 1 0 135 2 1 8 0 2 6 1 0 4 8 12 21 0 1 38 13 13 88 1 3 72 53 44 43 4 1 6 0 16 8 1 0 9 0 2 6 10 8 343 1 0 131 0 1 100 0 3 202 9 5 14 5 0 3 0 37 58 3 2 32 2 0 60 1 0 22 1 0 35 1 0 5 2 0 47 2 0 5 2 0 20 1 0 18 chain 3498 chr7 159138663 + 7611583 7611621 MER3 215 + 174 212 215374 38 chain 12235 chr7 159138663 + 7619188 7619376 MER30 238 - 0 201 151281 19 0 2 18 0 3 38 0 6 27 6 0 6 7 15 67 chain 5720 chr7 159138663 + 7625063 7625131 MER41B 635 - 82 154 187925 11 0 4 57 chain 352958 chr7 159138663 + 7639907 7643849 L1PA4 6152 + 2192 6151 11526 194 0 4 813 4 0 841 1 0 592 0 5 404 0 5 254 0 4 632 2 0 191 0 6 14 chain 81043 chr7 159138663 + 7665654 7666702 MER11C 1089 - 25 1089 43171 74 0 2 72 1 0 50 0 1 127 0 1 38 1 0 7 0 4 16 1 0 96 45 44 146 1 0 69 0 4 58 0 9 246 chain 528336 chr7 159138663 + 7695949 7702404 L1PA7 6471 - 1 6471 4371 151 5 0 5 1 6 265 0 2 192 1 0 225 0 3 418 0 1 484 0 2 728 8 14 289 6 7 578 0 4 388 0 1 67 1 2 153 1 0 343 0 1 377 24 12 197 2 0 72 0 1 34 0 8 158 14 15 53 7 11 357 1 0 158 13 12 272 4 0 65 0 3 6 3 0 297 1 2 31 chain 29350 chr7 159138663 + 7717295 7717603 AluYa5 310 - 2 310 87291 308 chain 18296 chr7 159138663 + 7717603 7717968 L1MA3 4352 - 497 863 132083 22 2 0 57 58 60 32 1 0 12 0 12 13 12 0 18 3 0 5 10 15 120 chain 4516 chr7 159138663 + 7725283 7725393 MER50 708 + 514 593 200606 10 21 0 13 1 0 23 11 2 31 chain 3857 chr7 159138663 + 7745305 7745427 L1MC1 2226 + 2083 2191 209479 20 1 0 5 30 20 7 1 0 19 5 4 26 1 0 7 chain 24818 chr7 159138663 + 7755948 7756285 LTR9 672 + 0 339 105780 24 0 3 34 16 16 33 1 0 229 chain 3226 chr7 159138663 + 7761848 7761887 MLT2A2 560 + 521 560 220498 39 chain 420884 chr7 159138663 + 7761887 7767126 HERVL-int 5654 + 0 5654 9513 210 11 9 5 0 2 565 0 1 340 2 0 592 0 2 179 64 53 31 0 8 188 1 2 28 0 7 373 0 22 199 0 1 244 0 1 429 0 3 8 0 4 443 0 4 60 0 385 417 0 1 40 22 3 24 0 3 205 0 1 135 1 0 120 1 0 52 4 5 17 0 4 101 3 2 4 0 1 121 chain 16490 chr7 159138663 + 7793264 7793519 L1MA2 4263 - 205 457 136958 43 8 7 33 21 19 150 chain 19414 chr7 159138663 + 7824384 7824598 AluYf4 310 - 4 216 128908 41 2 0 171 chain 26314 chr7 159138663 + 7835871 7836181 AluSp 311 - 1 311 98768 310 chain 6634 chr7 159138663 + 7840092 7840268 L1PB1 5432 - 9 165 180207 5 1 0 14 1 0 5 0 1 7 1 0 21 1 0 24 27 22 16 15 6 6 2 0 13 2 1 15 chain 6596 chr7 159138663 + 7862915 7862995 MER53 195 + 5 85 180483 80 chain 24576 chr7 159138663 + 7864972 7865299 THE1B 368 - 0 368 107103 74 0 1 97 2 0 23 2 1 66 3 31 16 0 15 44 chain 23513 chr7 159138663 + 7886449 7886700 L1HS 6032 + 5781 6032 113052 251 chain 48982 chr7 159138663 + 7914778 7915354 L1P3 4156 + 3261 3838 59763 110 1 2 127 1 0 30 0 1 307 chain 8832 chr7 159138663 + 7943691 7943799 MER101 471 - 2 110 166482 108 chain 15559 chr7 159138663 + 7944460 7944734 Tigger3a 397 + 0 333 139704 22 31 32 19 17 66 9 0 10 94 1 0 81 chain 18872 chr7 159138663 + 7947177 7947533 THE1B 368 + 0 368 130448 23 1 0 24 32 39 20 15 17 46 1 0 29 35 0 16 0 40 114 chain 24599 chr7 159138663 + 7954960 7955242 AluSp 311 - 29 311 107000 282 chain 16780 chr7 159138663 + 7990599 7990836 MSTA 426 - 0 238 136170 33 9 12 160 6 4 29 chain 37431 chr7 159138663 + 8035129 8035542 L1PA5 6144 + 5731 6144 72923 413 chain 53892 chr7 159138663 + 8040405 8041013 L1P2 5180 - 2761 3369 56433 608 chain 60475 chr7 159138663 + 8041013 8041724 L1PA6 6164 + 5432 6152 52595 161 0 2 309 0 7 241 chain 16037 chr7 159138663 + 8102401 8102737 L1PA15 4387 - 31 354 138259 25 9 5 11 3 1 44 6 3 22 30 29 12 4 0 18 3 2 54 1 0 5 0 9 7 17 11 65 chain 462695 chr7 159138663 + 8135959 8141898 L1PA7 6471 + 403 6467 8299 10 1 0 60 1 0 26 13 11 67 3 0 71 14 13 60 21 26 66 0 65 137 1 25 212 13 32 850 0 2 384 0 2 119 2 1 13 3 14 134 0 4 192 1 0 120 5 4 374 6 0 21 5 6 10 5 4 61 15 0 62 0 9 70 0 1 364 11 7 236 0 3 66 0 2 54 7 1 166 0 1 14 13 17 273 5 4 295 1 0 30 0 8 339 6 5 343 0 1 212 5 14 271 chain 13731 chr7 159138663 + 8149884 8150437 MER41B 635 + 386 624 145504 65 22 21 24 4 0 12 314 6 65 9 7 38 chain 46916 chr7 159138663 + 8169337 8169875 L1PA4 6152 - 3 546 61295 264 1 0 166 2 8 105 chain 4748 chr7 159138663 + 8227462 8227534 Tigger3b 1229 - 1121 1215 197947 23 1 2 36 0 21 12 chain 40275 chr7 159138663 + 8238406 8239053 L1MA2 4263 + 3436 4082 68908 22 0 4 39 1 0 11 0 4 68 4 0 38 7 12 18 11 10 128 1 0 8 0 16 144 48 31 69 7 0 16 0 1 7 chain 520062 chr7 159138663 + 8279058 8285190 L1PA6 6164 + 0 6156 5153 120 0 1 346 1 0 163 1 7 389 4 11 217 1 0 43 0 1 93 4 0 15 0 2 550 1 0 169 0 1 31 1 2 588 1 2 420 0 1 17 0 1 257 1 0 1164 0 10 28 1 0 193 0 1 715 1 0 409 12 13 176 chain 24285 chr7 159138663 + 8307298 8307575 AluYk4 311 + 0 277 108741 277 chain 6661 chr7 159138663 + 8325877 8325957 LTR47A 437 - 85 165 179988 80 chain 543597 chr7 159138663 + 8337750 8343768 L1PA3long 6157 - 5 6157 2255 622 1 0 242 1 5 4379 8 136 615 0 3 150 chain 27324 chr7 159138663 + 8357738 8358135 LTR23 429 - 5 405 95193 52 3 0 98 15 28 143 12 4 4 0 1 70 chain 22994 chr7 159138663 + 8372310 8372590 AluY 311 + 16 297 115645 116 0 1 74 0 3 5 3 0 82 chain 3525 chr7 159138663 + 8385066 8385125 MLT1A 405 + 3 66 214965 13 7 11 39 chain 113475 chr7 159138663 + 8385499 8387023 THE1B-int 1605 + 0 1605 33230 37 0 2 238 0 1 4 14 11 108 12 0 27 1 26 252 6 7 56 0 1 257 17 18 24 8 5 119 0 55 36 0 1 192 0 12 116 chain 24251 chr7 159138663 + 8387023 8387401 THE1B 368 + 0 368 108939 63 19 20 78 15 14 18 11 1 71 0 1 27 1 0 75 chain 200271 chr7 159138663 + 8391353 8393605 L1HS 6032 + 0 2243 19188 256 1 0 6 9 0 102 0 1 1878 chain 261957 chr7 159138663 + 8407452 8411229 L1PB1 5432 - 10 3748 15587 18 1 0 12 1 0 4 0 1 17 1 0 24 68 50 16 1 0 44 13 20 47 3 1 9 5 1 14 1 0 10 2 0 17 78 14 20 1 4 69 0 9 59 11 14 203 11 12 85 2 0 46 0 1 70 7 8 27 0 1 93 6 7 379 0 2 266 3 0 239 3 5 642 1 0 21 3 1 321 1 0 104 8 16 119 21 21 36 0 4 107 8 9 23 0 16 104 5 4 22 1 3 196 0 2 8 6 7 14 chain 123933 chr7 159138663 + 8413069 8414630 THE1B-int 1605 + 1 1593 29723 175 3 9 245 0 25 324 18 14 72 0 1 42 0 3 682 chain 24646 chr7 159138663 + 8414641 8415016 THE1B 368 + 0 368 106748 13 2 0 34 0 1 60 8 9 52 30 24 21 1 0 80 1 0 19 0 1 54 chain 8166 chr7 159138663 + 8435151 8435263 AluJo 314 - 183 293 170136 5 2 0 105 chain 6428 chr7 159138663 + 8436506 8436607 MLT1A 405 - 232 341 181793 41 11 19 49 chain 34739 chr7 159138663 + 8445000 8445461 L1PA8 5853 - 0 454 76557 93 1 0 17 4 3 48 1 0 13 12 11 60 2 0 44 1 0 165 chain 25837 chr7 159138663 + 8445461 8445772 L1PA8 5853 + 5121 5432 100715 311 chain 34780 chr7 159138663 + 8457360 8457834 LTR10F 562 + 0 562 76507 106 0 1 60 5 92 31 11 12 196 3 2 62 chain 28593 chr7 159138663 + 8501178 8501481 AluYb8 318 + 0 303 90772 303 chain 95564 chr7 159138663 + 8536512 8537610 L1PA5 6144 - 12 1117 37940 134 2 9 695 1 0 196 0 1 70 chain 26790 chr7 159138663 + 8564205 8564561 THE1A 353 + 0 353 97013 81 3 4 26 1 0 87 1 0 95 2 0 60 chain 124997 chr7 159138663 + 8564561 8566140 THE1A-int 1579 + 0 1579 29394 15 0 2 152 2 1 5 0 1 265 0 1 171 6 5 166 0 1 288 10 7 499 chain 27675 chr7 159138663 + 8566140 8566495 THE1A 353 + 0 353 94133 105 6 5 92 1 0 151 chain 24040 chr7 159138663 + 8576963 8577290 THE1C 375 - 39 375 110120 39 6 10 11 0 1 44 4 7 42 0 1 181 chain 3294 chr7 159138663 + 8617858 8617897 MER47B 469 - 36 75 219096 39 chain 38093 chr7 159138663 + 8627120 8627569 L1PA7 6471 - 7 453 72000 5 3 0 441 chain 29907 chr7 159138663 + 8627569 8627921 L1PA7 6471 + 5651 6003 85073 352 chain 58049 chr7 159138663 + 8690605 8691238 L1PA3long 6157 - 1 635 53952 219 0 1 414 chain 26354 chr7 159138663 + 8699076 8699370 L1PA5 6144 + 5848 6142 98596 294 chain 5478 chr7 159138663 + 8707447 8707617 L1M3e 1964 - 136 296 190230 8 1 0 25 75 67 26 1 0 34 chain 33417 chr7 159138663 + 8711733 8712110 L1PA3long 6157 + 5773 6157 78536 232 1 8 144 chain 3553 chr7 159138663 + 8747353 8747395 MIRc 230 + 65 107 214483 42 chain 30026 chr7 159138663 + 8750273 8750591 AluYb9 318 - 0 318 84727 318 chain 546131 chr7 159138663 + 8765970 8771992 L1PA3long 6157 - 3 6153 1926 776 1 0 4474 0 128 623 0 1 148 chain 515081 chr7 159138663 + 8772520 8779235 L1PA7 6471 - 12 6470 5663 157 1 0 335 3 1 221 2 1 29 4 5 82 4 7 221 0 1 30 8 11 535 1 0 8 0 1 28 271 0 114 0 4 410 0 3 21 7 9 352 0 1 64 0 1 200 0 1 24 0 2 18 11 15 693 2 5 208 5 0 56 5 3 7 0 2 32 19 21 292 1 0 849 1 2 10 5 7 23 0 8 91 1 5 551 7 5 263 23 2 10 0 1 400 chain 21802 chr7 159138663 + 8774189 8774460 L1PA7 6471 - 3369 3643 116743 249 1 4 21 chain 4216 chr7 159138663 + 8779333 8779523 Tigger3b 1229 - 548 745 204345 21 0 127 7 120 0 42 chain 12132 chr7 159138663 + 8789977 8790130 L1PA8A 6298 - 7 159 151685 102 1 0 50 chain 48077 chr7 159138663 + 8839975 8840519 L1PA3long 6157 + 5605 6149 60418 544 chain 51044 chr7 159138663 + 8842806 8843422 L1PA7 6471 + 5830 6451 58283 308 0 1 43 0 3 260 0 1 5 chain 199444 chr7 159138663 + 8897474 8899660 L1PA3long 6157 + 3953 6143 19248 239 0 3 1027 0 1 681 1 0 110 0 1 128 chain 184687 chr7 159138663 + 8916128 8918296 L1PA5 6144 - 0 2149 20525 11 3 1 830 5 8 475 0 3 178 27 0 50 0 1 167 1 0 75 6 10 340 chain 95596 chr7 159138663 + 8918296 8919435 L1PA5 6144 + 2850 3990 37905 325 6 0 57 0 1 11 0 3 110 3 7 265 7 6 355 chain 119092 chr7 159138663 + 8929573 8930929 SVA_D 2077 + 20 2076 31373 15 3 1 170 0 1 335 0 40 97 1 38 44 0 40 77 0 584 614 chain 16828 chr7 159138663 + 8991016 8991617 L1PA16 3655 + 3231 3619 136045 22 55 54 61 250 69 140 3 0 12 37 9 21 chain 86056 chr7 159138663 + 8996530 8997469 L1PA2 6032 - 0 939 41137 939 chain 116678 chr7 159138663 + 9057762 9059424 HERV17-int 4347 + 15 3879 32232 12 1 0 37 5 8 6 1 0 35 3 0 26 1 0 63 39 38 95 16 450 213 0 4 124 1 4 13 0 3 22 0 3 60 0 2 10 5 4 57 1 0 7 4 6 24 0 77 17 0 3 30 2 0 6 0 6 54 0 1 4 1 0 365 2 1 68 0 2 85 0 1672 147 chain 78729 chr7 159138663 + 9093517 9094442 L1PA5 6144 - 21 938 44175 5 1 0 120 1 0 602 17 4 81 0 3 13 0 4 85 chain 146260 chr7 159138663 + 9106345 9108434 L1PA10 4194 - 403 2499 25121 143 0 2 35 1 5 73 2 12 75 0 3 114 7 8 171 0 13 297 1 5 138 0 4 21 18 16 28 4 5 11 2 1 3 0 2 26 10 15 73 3 4 259 0 6 9 45 5 220 2 1 226 17 0 18 0 12 37 chain 3704 chr7 159138663 + 9122241 9122283 MLT1E1 597 - 421 463 211893 42 chain 21984 chr7 159138663 + 9128338 9128619 L1PA4 6152 + 5877 6151 120298 121 14 0 8 7 14 131 chain 106986 chr7 159138663 + 9180226 9181433 L1PA4 6152 - 0 1214 34974 6 0 5 669 1 0 166 0 3 365 chain 6374 chr7 159138663 + 9189354 9189437 MER44B 551 - 400 483 182221 83 chain 498601 chr7 159138663 + 9203026 9209406 L1PA7 6471 - 17 6395 6923 699 1 0 49 1 0 82 0 3 115 8 9 59 10 11 54 1 0 314 1 0 110 2 1 131 0 4 141 10 14 98 8 12 402 0 1 179 4 1 132 3 0 210 5 4 14 1 3 696 0 13 261 2 1 462 1 6 25 0 1 288 4 5 69 9 13 201 12 0 487 21 22 365 3 0 106 19 3 172 10 6 10 26 27 287 chain 5151 chr7 159138663 + 9210335 9210396 L1M1 2793 - 282 343 193534 61 chain 20014 chr7 159138663 + 9225801 9226039 L1PA5 6144 - 16 255 127100 155 0 1 83 chain 11290 chr7 159138663 + 9230063 9230363 L1PB1 5432 + 5159 5427 155088 9 2 0 49 21 19 45 1 0 4 62 46 13 10 1 6 0 3 16 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 96079 chr7 159138663 + 9284658 9285734 L1PA5 6144 + 5067 6141 37798 824 1 0 141 1 0 109 chain 70805 chr7 159138663 + 9295670 9296640 L1PA8 5853 + 4885 5853 48009 121 0 3 84 0 1 470 1 0 46 2 0 53 26 25 51 3 2 19 2 1 92 chain 29761 chr7 159138663 + 9297302 9297623 AluYb8 318 + 0 318 85599 132 3 0 186 chain 105949 chr7 159138663 + 9299561 9300885 L1PA7 6471 - 5 1340 35269 667 8 8 81 1 0 15 0 1 4 0 12 53 9 8 486 chain 7521 chr7 159138663 + 9321296 9321546 MLT1A 405 + 122 387 174032 16 144 159 90 chain 29335 chr7 159138663 + 9361621 9361927 AluYb8 318 - 12 318 87376 306 chain 42475 chr7 159138663 + 9375445 9375936 L1PA4 6152 - 9 509 66042 30 0 2 378 0 7 83 chain 40293 chr7 159138663 + 9393034 9393485 LTR7 482 - 0 482 68888 190 0 31 261 chain 289906 chr7 159138663 + 9394744 9398384 HERVH-int 3825 - 0 3825 14027 487 8 218 563 8 9 198 0 4 391 0 1 238 4 31 712 0 1 193 1 0 49 68 5 23 1 0 14 42 0 31 24 0 8 1 19 12 1 0 14 3 111 20 65 1 249 0 11 212 chain 39656 chr7 159138663 + 9398386 9398837 LTR7 482 - 0 482 69817 204 1 32 246 chain 45402 chr7 159138663 + 9399779 9400354 L1PA8A 6298 - 8 584 62593 93 7 0 9 1 8 172 1 2 292 chain 552823 chr7 159138663 + 9438387 9444411 L1PA2 6032 - 1 6029 1091 33 2 0 5113 0 1 212 0 1 437 1 6 125 1 0 100 chain 123235 chr7 159138663 + 9463226 9464794 THE1A-int 1579 - 9 1579 29966 160 1 0 4 0 1 70 1 0 4 0 1 560 17 18 249 2 1 196 1 2 171 0 1 132 chain 99991 chr7 159138663 + 9466518 9467601 L1PA2 6032 - 1911 2994 36641 1083 chain 177238 chr7 159138663 + 9467601 9469529 L1PA2 6032 + 4102 6030 21228 1928 chain 544592 chr7 159138663 + 9476022 9482154 L1PA4 6152 + 0 6146 2127 115 0 1 5 1 0 1123 1 0 1558 0 4 175 0 1 2040 0 6 148 0 1 134 0 1 649 0 1 116 0 1 67 chain 33772 chr7 159138663 + 9497331 9497779 LTR7 482 - 0 482 77981 49 12 14 137 5 36 23 1 2 221 chain 308830 chr7 159138663 + 9499670 9503396 HERVH-int 3825 - 10 3825 13054 739 11 1 60 1 0 913 11 16 88 1 3 279 4 31 139 0 25 742 0 1 76 1 0 46 0 37 15 29 0 12 0 57 72 20 0 430 4 0 33 chain 34337 chr7 159138663 + 9503398 9503848 LTR7 482 - 0 482 77148 49 12 14 122 0 31 41 0 1 172 2 0 52 chain 28777 chr7 159138663 + 9507447 9507870 LTR7B 505 + 0 496 89990 105 0 10 69 6 13 18 0 26 8 3 1 18 0 33 61 1 0 72 0 1 6 17 16 39 chain 18275 chr7 159138663 + 9510321 9510679 LTR7 482 + 1 476 132137 22 13 36 42 70 162 44 0 1 107 17 18 43 chain 2950 chr7 159138663 + 9539902 9540009 MLT1D 503 + 376 486 226071 25 62 65 20 chain 8878 chr7 159138663 + 9546447 9546572 L1PA8 5853 - 0 124 166235 66 0 1 25 2 1 15 1 0 16 chain 9447 chr7 159138663 + 9552880 9553124 MER44A 345 + 0 251 163330 13 3 0 6 67 81 5 3 0 79 7 0 36 7 13 18 chain 16331 chr7 159138663 + 9562666 9562859 L1PA7 6471 - 2 194 137400 14 1 0 178 chain 26022 chr7 159138663 + 9594068 9594423 THE1A 353 + 0 353 99933 110 1 0 92 5 7 8 3 0 136 chain 40832 chr7 159138663 + 9612565 9613085 L1PA5 6144 - 1 496 68128 13 1 4 132 27 1 266 2 0 79 chain 18272 chr7 159138663 + 9613086 9613297 L1PA5 6144 + 5407 5614 132148 187 4 0 20 chain 19228 chr7 159138663 + 9630576 9630811 L1PA7 6471 - 2 237 129439 235 chain 35608 chr7 159138663 + 9634658 9635041 L1HS 6032 - 946 1329 75404 383 chain 83929 chr7 159138663 + 9635047 9635941 L1HS 6032 + 5130 6024 41939 894 chain 20509 chr7 159138663 + 9645185 9645479 L1PA8 5853 - 0 289 125600 5 0 2 86 1 0 15 7 6 44 3 1 12 5 4 70 2 0 44 chain 107651 chr7 159138663 + 9660242 9661639 LTR12C 1709 - 0 1709 34816 67 0 2 8 15 14 390 11 4 74 0 1 31 16 173 31 0 2 76 0 1 9 0 119 99 3 4 112 3 4 107 0 43 36 7 0 302 chain 23018 chr7 159138663 + 9680634 9680901 L1PA6 6164 - 2 266 115541 8 3 0 256 chain 43593 chr7 159138663 + 9690601 9691142 L1PA8 5853 - 0 534 64694 93 1 0 17 1 0 32 1 0 16 0 1 4 1 0 11 1 0 71 2 0 44 1 0 245 chain 92235 chr7 159138663 + 9695045 9696431 L1PA5 6144 - 10 1072 38893 84 0 1 271 329 0 477 0 4 225 chain 30305 chr7 159138663 + 9695411 9695729 AluYb8 318 - 0 318 83898 318 chain 52056 chr7 159138663 + 9696431 9697019 L1P2 5180 + 1616 2205 57530 355 0 1 233 chain 254157 chr7 159138663 + 9703535 9707233 MER61-int 3695 - 0 3685 16023 201 5 10 50 4 5 79 10 11 172 33 31 20 5 6 58 25 0 67 2 1 121 1 0 98 1 0 135 4 0 15 2 0 79 18 25 44 0 12 30 0 1 184 5 7 46 1 4 51 0 1 51 0 1 90 0 10 31 0 2 135 54 55 13 5 0 115 0 5 69 16 14 292 0 1 120 1 0 363 0 2 108 4 1 11 2 0 94 0 1 4 5 3 4 0 1 23 10 14 24 12 6 56 15 1 139 1 0 29 2 3 21 0 1 164 5 4 18 9 5 17 chain 4534 chr7 159138663 + 9713838 9713894 FordPrefect 1504 + 663 719 200422 56 chain 47748 chr7 159138663 + 9729788 9730412 L1PA8 5853 - 0 618 60656 92 2 1 19 2 1 49 2 1 9 1 0 73 2 0 44 1 0 67 0 1 261 chain 126366 chr7 159138663 + 9740742 9742277 L1PA6 6164 + 4498 6162 28987 4 1 0 302 9 1 338 0 128 23 14 22 236 0 1 469 0 1 139 chain 79089 chr7 159138663 + 9761461 9762356 L1PA4 6152 - 1 896 44008 895 chain 3501 chr7 159138663 + 9762356 9762394 L1PA4 6152 + 4752 4790 207944 38 chain 41327 chr7 159138663 + 9762394 9762853 L1PA4 6152 + 4792 5251 67502 459 chain 4638 chr7 159138663 + 9775059 9775124 MER53 195 - 109 171 199211 13 3 0 49 chain 151223 chr7 159138663 + 9778005 9779650 L1PA3long 6157 - 2 1651 24444 841 0 4 804 chain 62947 chr7 159138663 + 9779650 9780334 L1PA3long 6157 + 3783 4467 51469 684 chain 147109 chr7 159138663 + 9785784 9787480 L1PA5 6144 + 4448 6144 25012 534 0 11 150 2 0 166 15 6 462 1 0 280 0 1 86 chain 175501 chr7 159138663 + 9812370 9814552 L1PA7 6471 - 1 2221 21395 12 0 4 313 0 3 28 0 12 104 0 1 282 0 1 4 5 8 5 1 0 58 0 7 154 0 5 44 2 3 101 0 1 36 7 0 82 1 8 670 0 2 57 1 0 215 chain 5176 chr7 159138663 + 9836433 9836491 L1PA4 6152 + 5897 5955 193275 58 chain 16774 chr7 159138663 + 9836492 9836683 L1PA4 6152 + 5955 6146 136186 191 chain 35107 chr7 159138663 + 9849008 9849390 L1PA2 6032 + 5650 6032 76040 382 chain 21181 chr7 159138663 + 9855632 9856142 MLT2A2 560 - 0 560 123274 40 76 18 29 7 12 48 3 112 49 13 9 11 102 100 132 chain 181241 chr7 159138663 + 9856142 9858632 HERVL-int 5654 - 0 5614 20875 288 4 5 75 0 3 85 8 0 122 5 6 330 35 3164 69 16 17 296 1 0 12 0 1 238 16 14 93 6 0 123 8 9 283 0 2 96 5 6 255 0 1 21 chain 210251 chr7 159138663 + 9864220 9867541 L1PA8 5853 - 45 2790 18488 48 1 0 16 1 0 29 1 0 36 2 1 70 2 0 44 1 0 52 5 6 119 0 2 22 0 1 273 1 2 78 7 5 11 321 0 521 11 23 292 0 1 87 0 2 106 1 2 33 307 0 110 0 29 37 9 17 87 0 1 147 4 5 41 0 1 388 chain 108340 chr7 159138663 + 9883321 9884517 L1PA4 6152 + 4938 6135 34606 753 0 1 443 chain 56373 chr7 159138663 + 9911829 9912495 LTR12_ 688 - 7 688 54920 229 0 14 190 0 1 247 chain 3178 chr7 159138663 + 9935923 9935980 MST-int 1221 + 95 147 221384 10 2 0 7 2 0 11 1 0 24 chain 13544 chr7 159138663 + 9936114 9936304 L1MA2 4263 + 3240 3423 146192 73 11 4 106 chain 173754 chr7 159138663 + 9940758 9942919 L1PA7 6471 - 3 2185 21617 103 6 5 45 8 7 27 10 6 234 1 0 424 1 0 405 0 1 7 8 37 208 0 1 9 3 0 8 0 1 654 chain 3127 chr7 159138663 + 9942919 9943646 L1PA7 6471 + 3559 4266 38504 110 0 4 248 0 2 50 2 9 18 6 0 5 27 0 261 chain 5351 chr7 159138663 + 9946848 9946916 L1MA3 4352 - 2654 2721 191525 47 1 0 20 chain 103324 chr7 159138663 + 9962261 9963524 L1PA7 6471 - 15 1288 35919 34 0 1 297 0 3 406 1 8 67 1 0 19 1 0 289 0 1 148 chain 16080 chr7 159138663 + 9963524 9963724 L1PA7 6471 + 4032 4232 137870 25 1 0 7 0 1 167 chain 3871 chr7 159138663 + 9963757 9964657 L1PA7 6471 + 4266 5173 38504 34 0 1 163 6 7 11 1 0 5 0 1 188 0 4 22 0 1 470 chain 54897 chr7 159138663 + 10029614 10030221 L1PA3long 6157 + 5550 6157 55772 607 chain 3056 chr7 159138663 + 10044148 10044185 MER58A 224 - 16 53 223893 37 chain 18954 chr7 159138663 + 10083904 10084125 L1PA7 6471 + 6249 6470 130213 221 chain 318105 chr7 159138663 + 10089162 10093107 L1PA7 6471 + 2506 6465 12669 13 0 2 117 1 2 50 1 4 253 6 15 114 1 0 287 0 1 4 1 0 12 0 1 110 13 6 77 0 5 41 0 3 468 0 7 148 1 0 230 0 1 421 8 0 576 1 2 145 1 0 474 0 1 206 7 8 13 0 1 4 1 0 131 3 0 6 chain 2820 chr7 159138663 + 10126589 10126619 MER39 703 + 608 638 228462 30 chain 23735 chr7 159138663 + 10145270 10145549 AluY 311 + 27 307 111858 105 0 1 174 chain 28064 chr7 159138663 + 10152923 10153222 AluYa5 310 - 11 310 92777 299 chain 3298 chr7 159138663 + 10164359 10164395 Tigger7 736 - 490 526 219028 36 chain 199537 chr7 159138663 + 10205879 10208051 L1PA2 6032 - 1 2176 19229 1811 0 3 361 chain 275469 chr7 159138663 + 10208051 10211046 L1HS 6032 + 826 3830 14901 269 0 9 2726 chain 27604 chr7 159138663 + 10222672 10222977 AluY 311 + 5 311 94335 127 0 1 178 chain 5655 chr7 159138663 + 10226907 10227188 L1MA3 4352 + 4038 4311 188510 48 139 114 17 25 43 22 11 10 19 chain 39730 chr7 159138663 + 10237085 10237893 L1PB1 5432 - 10 777 69713 18 1 0 13 21 23 22 2 0 15 10 7 19 9 0 9 2 0 15 9 0 44 1 0 16 2 1 52 2 0 6 8 4 12 1 0 8 1 0 24 126 108 43 0 1 75 0 1 80 1 9 24 10 11 107 chain 23424 chr7 159138663 + 10268774 10269107 THE1B 368 + 16 368 113508 90 8 20 46 7 6 122 11 19 49 chain 145027 chr7 159138663 + 10281451 10283115 L1PA5 6144 - 3 1672 25324 118 0 1 137 1 0 18 0 1 80 2 0 228 1 2 84 0 1 196 0 4 799 chain 276814 chr7 159138663 + 10288158 10292177 L1PA10 4194 + 175 4140 14828 12 2 0 11 7 2 6 2 0 10 44 36 19 4 2 13 40 32 17 2 0 21 1 0 7 18 8 9 1 0 14 4 0 9 1 0 15 1 0 54 6 7 5 2 0 584 0 1 227 1 2 51 0 4 67 0 10 84 10 11 12 9 8 104 44 46 72 3 2 342 0 1 4 1 0 112 0 4 24 1 0 239 44 29 86 6 2 10 0 1 387 3 4 103 1 3 187 4 5 99 0 1 237 0 4 149 31 15 186 0 1 78 1 2 32 4 1 23 chain 543455 chr7 159138663 + 10309844 10315984 L1PA4 6152 + 0 6151 2273 708 0 1 9 0 1 16 0 1 932 0 1 149 0 1 1355 1 0 106 4 6 904 0 1 127 0 1 658 0 1 144 1 2 616 1 2 409 chain 87916 chr7 159138663 + 10327507 10328940 L1PB1 5432 - 16 1296 40404 12 4 3 10 1 0 21 1 0 24 2 0 14 1 0 5 9 7 23 17 4 13 1 0 44 1 0 17 2 1 49 17 11 11 1 0 13 1 0 20 1 0 8 126 3 268 23 22 47 20 20 120 2 0 326 0 5 69 0 1 89 chain 54901 chr7 159138663 + 10328940 10329662 L1PB1 5432 + 3437 4141 55484 6 0 1 116 12 14 140 36 16 165 1 0 246 chain 3197 chr7 159138663 + 10332179 10332215 MER51A 677 - 442 478 221000 36 chain 3935 chr7 159138663 + 10334016 10334066 MLT1D 503 + 89 145 208340 44 0 6 6 chain 2902 chr7 159138663 + 10346174 10346206 MER11B 1079 + 146 178 227025 32 chain 32798 chr7 159138663 + 10355350 10355788 LTR3B_ 500 - 54 500 79531 40 0 2 52 5 4 45 1 2 139 11 12 33 0 6 35 1 0 76 chain 7696 chr7 159138663 + 10394217 10394353 L1MA2 4263 - 158 288 172959 39 32 26 65 chain 50210 chr7 159138663 + 10396836 10397479 PABL_A 660 - 0 660 58860 275 9 10 40 0 7 235 0 9 84 chain 21556 chr7 159138663 + 10400590 10400859 THE1D-int 1627 + 0 269 121942 269 chain 22941 chr7 159138663 + 10400876 10401207 L1PA8 5853 + 5477 5803 115903 42 8 9 36 1 0 46 2 0 68 2 1 61 2 1 19 1 0 43 chain 309325 chr7 159138663 + 10403706 10407815 L1P3 4156 - 17 4156 13030 24 2 1 7 2 0 258 18 16 100 0 8 100 0 1 29 0 3 22 5 8 184 0 1 209 0 2 21 0 1 47 0 4 304 10 12 558 5 6 338 0 2 680 0 1 754 39 29 23 15 17 48 6 5 53 7 21 155 0 1 86 chain 511737 chr7 159138663 + 10412187 10418325 L1PA6 6164 + 1 6162 6005 236 0 2 23 1 0 205 1 0 50 0 2 48 1 0 177 20 21 22 0 17 450 1 0 134 0 2 783 1 0 160 0 1 862 5 6 194 1 0 107 1 5 191 7 1 859 0 1 92 6 11 370 0 1 480 4 1 500 0 1 146 chain 22579 chr7 159138663 + 10424638 10424892 AluYf4 310 + 37 299 117679 26 1 9 227 chain 49475 chr7 159138663 + 10430211 10430895 MER4E 760 + 0 760 59406 24 2 0 124 25 28 55 0 69 67 0 4 75 1 0 3 0 5 74 10 8 224 chain 17048 chr7 159138663 + 10474887 10475108 MER30 238 - 0 237 135463 107 3 19 111 chain 133656 chr7 159138663 + 10486749 10488361 L1PA7 6471 + 4826 6446 27287 369 0 1 135 3 2 291 2 1 512 1 0 223 8 9 17 0 9 51 chain 89351 chr7 159138663 + 10497710 10498784 MER11B 1079 - 0 1079 39861 307 0 2 407 0 5 99 8 6 253 chain 121699 chr7 159138663 + 10504344 10506048 SVA_F 1814 - 0 1479 30481 10 2 0 532 254 0 156 50 0 150 3 18 12 49 0 53 2 0 93 0 117 338 chain 3649 chr7 159138663 + 10504894 10504946 SVA_F 1814 - 724 776 141920 52 chain 12919 chr7 159138663 + 10504946 10505142 SVA_F 1814 - 649 845 104215 196 chain 1911 chr7 159138663 + 10505298 10505327 SVA_F 1814 - 939 967 104215 3 1 0 4 0 1 12 1 0 8 chain 1019 chr7 159138663 + 10505533 10505562 SVA_F 1814 - 658 686 169826 24 1 0 4 chain 7028 chr7 159138663 + 10506512 10506593 L1PA2 6032 + 5951 6032 177270 81 chain 4777 chr7 159138663 + 10524013 10524092 MLT1D 503 - 2 85 197611 14 0 3 5 3 0 40 1 5 16 chain 25945 chr7 159138663 + 10533777 10534142 MLT2A1 477 + 0 385 100232 48 0 2 89 1 2 27 1 5 122 3 1 28 1 0 33 0 16 12 chain 532758 chr7 159138663 + 10540597 10546722 L1PA5 6144 + 10 6139 3880 856 0 2 3195 0 1 1685 1 0 21 0 2 367 chain 31564 chr7 159138663 + 10546891 10547329 L1PA10 4194 + 3702 4143 81539 380 38 41 20 chain 35523 chr7 159138663 + 10565653 10566049 L1PA4 6152 - 1001 1397 75516 396 chain 90927 chr7 159138663 + 10566055 10567062 L1PA4 6152 + 5144 6151 39316 1007 chain 464626 chr7 159138663 + 10567115 10576112 L1PA8A 6298 + 80 6292 8233 21 3 0 18 83 70 15 57 61 40 31 25 5 0 3 4 0 1 64 2 0 17 1 0 8 1 0 3 1 0 131 17 10 7 0 7 24 24 13 277 0 1 135 1 4 46 0 1 40 10 5 27 0 1 81 0 1 550 0 1 254 7 8 451 1 0 171 1 0 99 33 7 76 2 0 555 0 4 24 0 3 175 0 3 71 0 1 99 0 1 72 0 1 22 21 0 233 1 3 682 1 2 529 0 35 415 2763 0 28 7 8 121 6 7 117 1 2 101 17 18 97 chain 233263 chr7 159138663 + 10572855 10575614 L1P1 4361 + 8 2781 17129 701 5 9 152 0 1 10 0 9 1891 chain 39999 chr7 159138663 + 10590578 10591121 MLT2A2 560 + 0 560 69322 186 8 12 56 2 1 74 15 16 61 0 11 55 1 3 85 chain 141947 chr7 159138663 + 10606072 10607640 L1PA3long 6157 + 4581 6157 25834 1434 1 0 24 0 8 54 0 1 55 chain 24860 chr7 159138663 + 10607867 10608156 AluYk4 311 + 9 296 105569 123 1 0 129 1 0 35 chain 13957 chr7 159138663 + 10623409 10623604 Tigger1 2417 + 2117 2327 144724 27 4 20 51 1 0 112 chain 51921 chr7 159138663 + 10625965 10626562 L1PA6 6164 + 5564 6162 57670 459 0 1 138 chain 3863 chr7 159138663 + 10630177 10630223 MADE1 96 - 1 47 209402 46 chain 7640 chr7 159138663 + 10664124 10664223 L1PA15 4387 + 4027 4125 173288 77 1 0 21 chain 405645 chr7 159138663 + 10666521 10671451 L1PA7 6471 + 1513 6466 9921 206 3 17 613 11 10 66 1 2 62 0 1 142 12 0 43 1 0 874 0 4 107 5 6 134 0 15 14 0 1 199 18 20 699 0 1 236 1 0 636 1 0 80 1 0 765 chain 118159 chr7 159138663 + 10688409 10689962 THE1A-int 1579 - 5 1578 31746 76 0 5 116 0 13 369 0 1 96 5 6 12 2 1 381 1 0 56 22 19 182 0 3 114 0 2 121 chain 28566 chr7 159138663 + 10693499 10693796 AluYd8 298 + 0 297 90894 297 chain 468354 chr7 159138663 + 10706158 10712374 L1PA8A 6298 - 8 6270 8094 97 3 4 187 0 1 171 0 1 255 0 3 80 1 4 173 1 2 44 0 6 60 2 1 23 5 6 280 0 3 50 1 0 847 0 1 119 0 1 87 0 1 230 0 2 25 0 1 44 0 1 32 38 43 277 1 2 128 0 4 21 0 4 210 0 4 133 1 3 115 2 4 48 22 24 18 7 12 39 4 5 34 0 5 17 0 1 339 1 0 571 0 31 87 0 3 118 2 1 26 0 2 172 1 4 86 3 4 59 20 18 167 0 1 4 1 0 161 17 15 6 1 0 15 2 0 72 6 0 16 7 6 48 1 0 5 2 0 3 2 0 14 1 0 8 11 9 5 1 0 13 1 0 4 2 0 15 2 0 12 29 29 19 15 7 19 3 0 24 2 1 8 2 0 6 10 6 18 1 0 6 6 0 6 chain 405605 chr7 159138663 + 10724908 10730393 L1PB1 5432 + 36 5420 9922 567 1 2 119 4 5 33 0 1 170 2 0 5 0 2 137 8 9 161 0 1 154 7 0 18 0 3 6 23 21 157 13 19 781 0 2 86 7 8 339 1 0 170 1 2 76 0 12 48 0 1 90 0 1 244 8 7 235 1 4 371 7 5 518 3 0 18 85 0 61 0 2 97 0 7 222 4 6 64 3 0 12 11 0 23 1 0 9 1 0 5 29 23 45 2 1 9 7 6 41 8 7 12 25 12 18 8 5 15 2 0 24 2 1 20 1 0 13 1 0 16 chain 40118 chr7 159138663 + 10733151 10733619 L1PA6 6164 + 5539 6010 69158 197 0 2 205 0 1 66 chain 12846 chr7 159138663 + 10733621 10733774 L1PA6 6164 + 6011 6162 148862 143 2 0 8 chain 504808 chr7 159138663 + 10735220 10741642 L1PA7 6471 + 0 6468 6555 135 17 20 80 8 9 8 0 7 145 2 0 69 1 0 104 27 24 120 10 13 51 1 0 368 2 1 55 47 71 4 1 0 21 0 3 279 2 0 717 2 1 333 0 3 701 7 6 42 1 0 4 0 1 108 2 0 16 0 1 9 2 1 40 0 3 130 0 2 960 9 11 308 6 7 17 3 4 602 0 4 68 6 10 42 0 1 52 1 0 677 chain 323951 chr7 159138663 + 10781253 10785369 L1P3 4156 + 8 4139 12442 132 4 8 101 1 0 7 14 6 60 1 0 888 0 4 52 8 9 282 12 13 67 0 1 118 6 5 223 0 1 490 5 13 110 1 2 21 5 9 467 0 4 263 0 1 123 8 6 20 0 1 105 0 1 205 0 4 145 1 0 26 10 6 100 2 0 7 2 1 24 chain 499861 chr7 159138663 + 10786714 10792854 L1PA5 6144 + 0 6142 6848 120 0 14 42 0 1 73 9 6 217 5 6 473 25 0 217 9 0 39 1 2 13 0 1 455 1 0 166 13 29 374 0 2 48 8 3 354 2 3 518 1 0 468 51 0 7 0 57 239 7 5 352 0 1 739 0 7 646 1 2 436 4 0 7 chain 10629 chr7 159138663 + 10793045 10793166 L1PA7 6471 + 5478 5599 157696 121 chain 71823 chr7 159138663 + 10793166 10794032 L1PA7 6471 + 5603 6470 47555 18 2 0 620 0 2 194 0 4 18 2 0 7 1 0 4 chain 27593 chr7 159138663 + 10817116 10817414 L1PA5 6144 - 955 1253 94365 298 chain 84975 chr7 159138663 + 10817416 10818360 L1PA5 6144 + 5199 6143 41522 944 chain 544651 chr7 159138663 + 10845525 10851677 L1PA4 6152 - 1 6152 2120 356 2 0 2630 1 0 372 8 7 26 1 0 757 0 1 73 0 1 475 1 0 151 0 1 239 0 2 1060 chain 195109 chr7 159138663 + 10867481 10870161 MER57-int 2662 + 42 2646 19572 28 62 43 75 4 9 118 2 0 378 15 0 120 2 0 133 2 0 146 4 0 312 2 0 58 2 1 445 3 0 35 0 1 384 2 1 90 23 17 63 29 18 26 1 0 7 9 0 8 0 5 20 22 16 25 4 1 21 chain 25266 chr7 159138663 + 10870179 10870571 MER57A1 433 + 0 407 103388 113 7 10 66 0 11 72 49 50 85 chain 43725 chr7 159138663 + 10872321 10873107 L1PB1 5432 - 5 690 64536 5 2 0 18 1 0 13 6 5 16 1 0 24 2 0 15 1 0 4 2 0 30 17 4 12 1 0 44 1 0 16 2 1 12 3 4 37 2 0 8 5 1 12 1 0 12 6 5 15 1 0 11 68 1 105 3 2 217 0 1 35 chain 29356 chr7 159138663 + 10873136 10873561 L1PA16 3655 + 3148 3571 87262 56 1 0 50 0 1 33 16 14 49 3 4 54 4 3 159 chain 54024 chr7 159138663 + 10885245 10886118 L1PB1 5432 - 57 907 56345 5 1 0 24 2 0 11 12 9 18 23 12 16 1 0 44 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 22 7 0 7 1 6 4 0 1 100 5 7 176 0 8 13 13 5 150 8 12 102 chain 7995 chr7 159138663 + 10905711 10905814 L1PA16 3655 - 118 225 171091 68 0 4 35 chain 190839 chr7 159138663 + 10917461 10921457 L1PA11 4918 + 1633 4578 19966 139 1 0 40 1 2 106 0 1 135 2 1 90 0 1 116 28 27 32 320 0 29 4 3 4 0 1 97 0 6 82 2 0 83 2 1 111 0 1 150 0 1 302 22 24 64 0 1 67 6 5 190 1 0 16 968 213 241 0 3 64 4 27 71 0 5 128 6 14 68 14 13 60 14 12 8 1 0 19 47 33 14 1 0 13 2 0 11 chain 68301 chr7 159138663 + 10924433 10925180 L1PA3long 6157 - 0 747 49121 747 chain 21912 chr7 159138663 + 10932848 10933253 THE1D 372 + 0 372 120584 56 7 8 89 105 71 148 chain 4077 chr7 159138663 + 10934070 10934116 L2a 937 + 271 317 206227 46 chain 79796 chr7 159138663 + 10935577 10936704 L1MA2 4263 + 2436 3536 43687 103 38 0 7 0 8 60 33 31 19 14 15 355 0 2 228 0 1 51 0 1 219 chain 7657 chr7 159138663 + 10941614 10941699 HY3 101 + 15 100 173176 85 chain 182838 chr7 159138663 + 10964684 10967323 Harlequin-int 5206 + 135 2467 20697 14 5 1 136 0 3 5 4 0 158 3 1 30 6 0 78 1 4 117 1 0 16 6 7 56 320 0 529 2 0 58 0 1 215 2 1 30 11 22 252 11 26 49 2 0 490 4 5 28 chain 31096 chr7 159138663 + 10967872 10968321 LTR10F 562 + 0 514 82348 22 0 1 83 0 1 19 25 1 19 7 0 7 1 57 8 0 14 9 0 24 146 0 1 4 1 0 98 chain 12147 chr7 159138663 + 10968347 10968582 MER47A 366 - 70 337 151625 49 9 17 47 19 0 50 27 70 34 chain 38780 chr7 159138663 + 10989972 10990534 MER61F 604 - 36 604 71037 34 1 0 118 0 5 55 22 21 68 2 0 5 2 4 19 1 0 42 0 1 48 9 0 113 0 12 23 chain 25268 chr7 159138663 + 10990681 10991011 THE1B 368 - 26 368 103378 150 2 0 19 5 4 109 1 16 44 chain 5035 chr7 159138663 + 10993588 10993655 L1PB4 2604 - 680 747 194779 30 1 0 16 0 1 20 chain 486698 chr7 159138663 + 10999728 11005854 L1PA6 6164 - 8 6164 7490 282 0 1 188 1 4 193 1 0 168 0 5 15 0 4 53 0 1 256 0 1 9 1 0 4 0 1 235 0 6 50 1 2 397 14 2 342 1 4 218 10 14 178 1 0 92 0 1 213 0 1 25 10 7 323 0 5 128 1 2 566 6 7 425 1 0 237 0 8 55 10 14 263 0 1 94 1 0 5 0 1 41 0 1 80 4 6 4 1 0 114 0 17 198 0 1 21 1 0 1 3 0 116 19 0 450 chain 35684 chr7 159138663 + 11012443 11013106 MER51A 677 + 0 661 75292 60 1 0 110 13 76 15 5 6 39 75 2 21 8 14 82 4 7 64 0 3 34 23 27 16 16 8 77 chain 103564 chr7 159138663 + 11034232 11035716 LTR12C 1709 - 0 1709 35844 74 10 8 63 0 101 22 0 1 208 24 17 72 12 75 51 0 1 98 0 81 100 42 1 202 30 33 25 0 24 9 25 0 153 1 26 168 0 1 95 chain 2769 chr7 159138663 + 11034966 11035008 LTR12C 1709 - 653 695 127422 42 chain 153246 chr7 159138663 + 11057264 11059560 L1MA1 4479 - 343 2619 24195 25 6 4 29 1 0 25 0 1 11 55 41 48 2 0 5 1 0 12 0 4 72 1 0 14 2 0 6 0 1 12 2 1 62 13 12 12 9 6 8 0 1 9 1 0 30 17 18 72 1 14 62 2 0 130 3 0 72 2 1 53 5 0 12 1 0 94 8 6 108 4 3 55 2 0 98 0 1 11 0 2 6 5 4 59 1 0 32 13 11 61 0 4 28 1 0 66 1 0 164 8 0 30 0 2 316 1 0 45 1 10 88 0 2 85 chain 4931 chr7 159138663 + 11144399 11144464 MER5A 189 - 79 161 195917 18 0 17 47 chain 24998 chr7 159138663 + 11161495 11161854 L1PA8 5853 - 8 363 104804 85 7 8 11 2 1 43 3 4 13 3 1 72 2 0 43 1 0 74 chain 26879 chr7 159138663 + 11213746 11214038 AluYb8 318 - 17 307 96702 178 2 0 112 chain 275395 chr7 159138663 + 11233404 11237123 MER61-int 3695 + 0 3695 14905 46 1 0 49 5 4 143 4 1 28 2 1 39 8 12 78 112 69 77 0 1 94 2 0 8 3 0 490 0 1 67 1 2 12 0 3 25 0 1 341 1 0 501 9 7 31 2 1 31 0 4 16 0 3 34 0 3 160 0 1 149 0 1 231 1 0 58 0 1 39 1 0 37 1 0 241 16 14 9 0 1 250 1 0 115 10 9 10 1 0 4 0 1 105 0 16 20 chain 15510 chr7 159138663 + 11259623 11259834 AluY 311 + 104 304 139853 29 33 22 149 chain 20975 chr7 159138663 + 11308188 11308541 THE1D 372 + 2 372 124013 59 4 14 90 55 56 17 2 8 126 chain 14985 chr7 159138663 + 11309979 11310421 LTR49 580 + 106 580 141369 26 2 0 5 40 34 27 70 99 14 2 0 35 1 31 36 65 53 65 0 1 29 7 1 18 chain 74247 chr7 159138663 + 11320079 11320955 L1PA7 6471 - 1 897 46389 79 0 3 78 4 5 278 0 8 303 3 6 85 0 5 46 chain 150725 chr7 159138663 + 11323101 11324916 L1PA7 6471 - 7 1820 24514 6 2 0 148 4 5 521 6 0 36 4 0 48 13 14 64 1 0 19 0 4 644 0 1 279 0 4 20 chain 6797 chr7 159138663 + 11350460 11350536 L1PA16 3655 - 557 633 178980 76 chain 385655 chr7 159138663 + 11387350 11392059 L1PA7 6471 - 5 4829 10586 156 1 2 185 7 0 187 1 6 135 0 2 163 0 3 428 0 1 395 0 1 262 1 0 139 0 5 394 1 0 8 0 11 414 1 0 22 4 14 143 0 4 157 18 0 330 13 98 164 14 0 133 0 19 721 0 10 112 chain 32327 chr7 159138663 + 11398415 11398807 L1PA7 6471 + 6059 6459 80306 305 0 8 87 chain 489955 chr7 159138663 + 11425398 11431679 L1PA7 6471 - 52 6468 7369 182 0 4 6 3 1 524 0 2 17 0 1 53 5 8 666 1 0 277 9 13 442 0 8 206 4 0 15 0 11 196 1 5 285 1 0 31 0 29 121 0 32 40 0 26 12 1 0 105 0 3 169 5 0 65 0 14 128 0 1 80 30 0 12 0 4 136 1 0 135 25 34 453 0 11 372 0 13 206 1 0 271 4 5 6 0 1 80 4 0 6 3 7 29 1 2 34 5 1 41 2 1 170 0 6 162 24 3 35 1 2 108 13 22 24 0 8 37 1 2 199 chain 262690 chr7 159138663 + 11434482 11438181 L1PA7 6471 + 2343 6470 15553 289 4 0 89 0 1 271 317 0 71 13 9 42 0 1 127 4 0 169 1 5 44 0 5 42 0 4 199 0 4 286 11 10 335 3 721 117 9 13 272 0 5 144 1 4 60 0 1 15 0 2 196 22 36 383 1 2 47 13 4 102 chain 69317 chr7 159138663 + 11439172 11439945 L1PA5 6144 + 5368 6141 48676 773 chain 5096 chr7 159138663 + 11452948 11453012 MER72 723 + 30 94 194122 64 chain 11103 chr7 159138663 + 11465578 11465697 L1HS 6032 + 5912 6031 155792 119 chain 13033 chr7 159138663 + 11478937 11479144 Tigger1 2417 + 54 263 148114 21 37 36 97 0 3 52 chain 10662 chr7 159138663 + 11481323 11481457 L1PA7 6471 + 6177 6310 157553 98 2 1 34 chain 13035 chr7 159138663 + 11481459 11481619 L1PA7 6471 + 6310 6467 148100 149 3 0 8 chain 64172 chr7 159138663 + 11483565 11484385 L1PA6 6164 + 5285 6162 50928 29 0 8 482 7 55 158 3 4 141 chain 34416 chr7 159138663 + 11539764 11540278 L1PA14 3548 + 100 608 77037 46 34 23 48 1 0 20 2 1 7 0 12 11 2 0 29 4 2 153 2 1 155 chain 1123 chr7 159138663 + 11549655 11549807 L1PB1 5432 + 4949 5101 109566 152 chain 234465 chr7 159138663 + 11549810 11552556 L1PA5 6144 + 3390 6135 17064 633 14 5 160 0 1 1526 0 2 140 16 21 257 chain 2616 chr7 159138663 + 11552567 11552921 L1PB1 5432 + 5101 5417 109566 2 5 0 14 3 1 29 16 11 9 2 0 50 9 8 12 1 0 44 1 0 15 1 0 4 2 0 11 9 0 16 13 10 9 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 14470 chr7 159138663 + 11561094 11561338 L1HS 6032 - 0 168 142983 7 23 0 50 53 0 111 chain 21861 chr7 159138663 + 11608011 11608280 AluY 311 + 41 311 120777 91 10 11 168 chain 13586 chr7 159138663 + 11608460 11610111 L1MA4 2864 + 959 2804 146029 8 1 0 21 2 0 4 2 0 56 17 18 48 1216 1442 73 1 0 13 1 0 13 148 122 27 chain 33508 chr7 159138663 + 11633523 11633967 MLT2A1 477 + 0 477 78399 109 0 1 57 6 3 209 8 43 55 chain 441782 chr7 159138663 + 11633967 11639357 HERVL-int 5654 + 0 5652 9002 94 0 3 120 5 6 99 0 1 79 3 0 536 2 5 175 1 0 46 0 1 138 0 1 398 0 2 207 0 1 631 0 1 215 8 0 248 3 4 693 0 1 526 3 360 498 99 0 563 chain 32254 chr7 159138663 + 11639359 11639791 MLT2A1 477 + 0 477 80435 168 5 2 201 0 4 7 0 2 9 2 44 40 chain 106850 chr7 159138663 + 11642506 11643665 L1PA2 6032 + 4870 6029 35017 1159 chain 5042 chr7 159138663 + 11657334 11657393 L1PA5 6144 + 5826 5885 194710 59 chain 20011 chr7 159138663 + 11657394 11657624 L1PA5 6144 + 5914 6144 127108 230 chain 7951 chr7 159138663 + 11666781 11666874 L1PA8 5853 + 5760 5853 171325 93 chain 505089 chr7 159138663 + 11714600 11721019 L1PA7 6471 + 3 6465 6533 145 0 6 6 5 0 243 0 4 508 5 6 130 11 0 6 1 12 193 0 1 265 1 0 463 0 2 54 16 16 422 12 22 125 20 0 76 0 3 39 10 91 301 1 2 359 1 0 26 1 0 307 1 0 206 5 6 4 1 0 616 0 4 524 10 5 120 13 0 10 0 13 1049 40 4 68 chain 3243 chr7 159138663 + 11720917 11720951 L1PA7 6471 + 5368 5402 218264 34 chain 29839 chr7 159138663 + 11727541 11727915 L1PA4 6152 - 0 379 85316 8 0 1 12 0 2 132 0 1 11 1 0 82 0 4 116 2 0 10 chain 11999 chr7 159138663 + 11736060 11736238 L1PA8 5853 - 0 176 152199 93 1 0 19 2 1 34 13 13 16 chain 73820 chr7 159138663 + 11762276 11763104 L1PA4 6152 + 5313 6143 46606 461 0 1 122 0 1 245 chain 144965 chr7 159138663 + 11784076 11785729 L1PA4 6152 - 0 1658 25331 10 0 6 242 1 2 140 2 1 532 2 1 724 chain 24955 chr7 159138663 + 11803925 11804214 AluYk4 311 + 0 300 105031 218 0 11 71 chain 16723 chr7 159138663 + 11811880 11812211 L1PA15 4387 + 4037 4366 136334 12 0 8 42 10 9 22 1 0 55 1 0 20 4 0 11 2 1 35 24 21 41 3 1 12 3 1 13 0 6 9 1 0 10 chain 28511 chr7 159138663 + 11817493 11817808 AluYa5 310 + 0 307 91141 126 8 0 181 chain 21364 chr7 159138663 + 11820430 11820653 AluYb8 318 + 95 318 122637 223 chain 18294 chr7 159138663 + 11903460 11903655 L1PA3long 6157 + 5962 6157 132093 195 chain 48461 chr7 159138663 + 11922367 11923161 L1PA13 3608 + 2778 3548 60144 66 0 9 110 13 8 118 0 1 38 1 0 32 6 8 72 1 0 32 3 1 9 0 1 49 9 8 16 1 0 40 2 0 40 16 12 18 1 0 26 3 0 12 5 0 14 15 7 10 1 0 6 2 0 7 chain 19391 chr7 159138663 + 11927542 11927776 THE1B-int 1605 + 0 234 128973 234 chain 87322 chr7 159138663 + 12022724 12023800 MER11B 1079 - 0 1079 40638 11 5 4 290 2 4 407 0 5 99 10 7 252 chain 24173 chr7 159138663 + 12024244 12024505 AluYa5 310 + 40 300 109359 92 1 0 168 chain 12771 chr7 159138663 + 12037241 12037398 L1PA16 3655 - 1353 1510 149173 157 chain 6079 chr7 159138663 + 12057896 12057970 Tigger1 2417 + 168 243 184589 25 0 1 49 chain 28756 chr7 159138663 + 12058712 12059026 AluYa5 310 - 4 310 90088 174 8 0 132 chain 7996 chr7 159138663 + 12063383 12063540 THE1C 375 + 0 165 171088 15 2 0 32 41 51 67 chain 41142 chr7 159138663 + 12083212 12083760 MLT2A2 560 - 0 560 67730 53 1 2 4 1 0 88 3 14 188 7 8 203 chain 154788 chr7 159138663 + 12109311 12112437 HERVIP10F-int 4088 + 429 3407 24003 6 1 0 7 1 0 17 1 0 16 108 95 34 10 7 7 1 0 10 3 1 29 2 1 14 1 0 7 1 0 28 9 6 47 1 0 4 4 2 26 6 5 9 1 0 59 1 0 5 1 0 26 97 80 7 1 0 30 1 0 41 2 0 10 2 1 7 1 0 14 1 0 5 15 11 21 2 0 8 1 0 22 1 0 14 1 0 41 1 0 24 0 6 107 34 22 24 1 0 12 1 0 5 1 0 22 1 0 31 1 0 33 0 1 25 66 63 27 8 7 25 17 14 139 0 15 254 2 1 20 8 7 57 2 1 37 0 1 45 1 0 56 0 1 21 14 12 134 2 1 241 0 14 253 2 0 6 34 33 58 64 41 23 1 0 9 71 58 7 1 0 13 13 9 16 26 22 13 41 29 11 46 33 14 1 0 4 1 0 11 1 0 6 21 12 12 chain 28718 chr7 159138663 + 12132203 12132769 LTR18B 584 + 0 569 90258 76 21 22 87 0 2 13 0 13 17 0 6 41 31 38 62 70 67 7 14 0 52 0 1 20 10 0 29 0 1 4 1 0 11 chain 91258 chr7 159138663 + 12161379 12162488 L1PA7 6471 - 1 1103 39214 66 1 0 13 0 3 71 8 0 9 2 0 608 0 2 76 2 0 182 0 1 71 chain 24680 chr7 159138663 + 12174118 12174390 L1P1 4361 - 1744 2016 106550 272 chain 37278 chr7 159138663 + 12174390 12174801 L1PA3long 6157 + 5746 6157 73118 411 chain 300513 chr7 159138663 + 12181351 12184717 L1PA4 6152 + 2764 6152 13395 983 0 8 440 0 1 789 0 1 137 0 1 68 0 8 290 0 3 659 chain 513708 chr7 159138663 + 12204510 12210942 L1PA7 6471 - 2 6471 5811 64 10 9 184 1 0 591 1 0 300 0 1 92 0 1 6 1 0 587 0 1 380 1 2 220 0 1 179 3 4 18 1 0 4 0 7 239 1 3 49 1 0 4 0 10 10 1 0 634 0 3 171 2 1 48 13 15 30 0 1 155 0 2 116 1 0 292 0 1 181 2 1 290 0 1 129 0 1 177 10 14 62 1 2 282 0 5 8 1 0 396 45 45 35 1 2 124 5 6 273 chain 2839 chr7 159138663 + 12215590 12215625 L1ME1 1623 + 1134 1169 228083 35 chain 90678 chr7 159138663 + 12220966 12222061 L1PA3long 6157 - 7 1070 39372 154 37 4 86 0 2 6 10 9 209 19 19 574 chain 171254 chr7 159138663 + 12222061 12223942 L1PA3long 6157 + 3202 5083 21908 1439 1 0 124 0 1 317 chain 117312 chr7 159138663 + 12230146 12231696 THE1B-int 1605 - 11 1605 32023 360 19 37 21 11 10 24 4 6 390 13 15 55 2 0 206 13 38 432 chain 119289 chr7 159138663 + 12264514 12265947 L1PA6 6164 - 18 1458 31297 440 1 0 212 1 0 184 0 14 263 16 0 138 0 1 152 0 10 26 chain 66359 chr7 159138663 + 12280880 12281682 L1PA7 6471 - 1 811 49926 11 0 1 581 1 4 24 2 0 6 0 1 46 0 3 93 0 2 38 chain 29870 chr7 159138663 + 12281717 12282033 AluYb8 318 + 0 316 85210 316 chain 334845 chr7 159138663 + 12290899 12294905 L1PA7 6471 + 2139 6459 12030 502 21 7 57 0 2 332 0 8 1204 1 2 410 0 312 651 0 6 123 0 1 42 2 1 128 2 0 380 1 2 150 chain 26805 chr7 159138663 + 12301106 12301409 L1PA4 6152 - 199 504 96959 70 0 2 233 chain 12894 chr7 159138663 + 12301409 12301566 L1PA4 6152 + 5989 6152 148651 6 0 1 145 0 5 6 chain 15373 chr7 159138663 + 12316340 12316683 L1MA4A 3247 - 2720 3055 140284 33 13 12 165 36 32 14 5 0 6 55 57 16 chain 46738 chr7 159138663 + 12352836 12353370 L1PA2 6032 + 5499 6028 61424 86 4 0 304 7 0 114 0 6 19 chain 6028 chr7 159138663 + 12380271 12380338 LTR19B 566 - 499 566 185001 67 chain 23875 chr7 159138663 + 12382325 12382587 L1PA3long 6157 - 15 277 111061 262 chain 145163 chr7 159138663 + 12387251 12388862 L1PA3long 6157 + 4547 6157 25298 579 1 0 1031 chain 23505 chr7 159138663 + 12394781 12395055 AluY 311 + 21 296 113099 122 0 1 152 chain 34332 chr7 159138663 + 12447479 12447867 L1PA4 6152 + 5762 6151 77163 280 0 1 108 chain 13669 chr7 159138663 + 12460225 12460502 L1PB1 5432 - 10 263 145709 18 1 0 13 1 0 21 1 0 24 72 53 7 0 1 4 1 0 45 1 0 17 1 0 50 chain 511461 chr7 159138663 + 12465681 12472111 L1PA6 6164 - 2 6164 6031 226 0 1 355 0 12 84 0 12 708 319 0 109 0 5 137 0 1 148 0 2 308 1 0 358 1 0 20 0 1 174 0 10 211 10 9 79 4 5 313 1 0 4 0 1 313 1 0 230 0 1 391 0 2 997 0 4 23 3 6 902 chain 16709 chr7 159138663 + 12475354 12475656 THE1D 372 - 66 372 136382 49 74 77 17 5 6 157 chain 4486 chr7 159138663 + 12491875 12491946 L1P1 4361 + 4272 4341 200958 33 1 0 23 2 1 12 chain 69714 chr7 159138663 + 12501039 12501890 L1PA8A 6298 + 5037 6291 48518 415 5 406 219 1 2 152 0 1 59 chain 21793 chr7 159138663 + 12523221 12523521 AluSq4 311 + 8 299 121047 124 21 12 155 chain 541972 chr7 159138663 + 12536839 12542864 L1PA3long 6157 + 0 6152 2510 152 0 1 109 9 0 102 0 1 403 8 136 1336 4 9 896 0 1 3006 chain 8320 chr7 159138663 + 12543241 12543337 L1PA4 6152 - 0 101 169280 6 0 5 90 chain 61161 chr7 159138663 + 12545700 12546423 L1PA6 6164 + 5437 6159 52270 296 0 1 419 2 0 6 chain 126321 chr7 159138663 + 12555110 12556686 THE1A-int 1579 + 1 1579 29000 169 1 0 5 2 3 463 9 11 4 0 1 824 1 0 98 chain 14555 chr7 159138663 + 12569140 12569333 MER4D0 881 - 65 255 142722 44 1 0 127 6 4 15 chain 25999 chr7 159138663 + 12574816 12575158 THE1B 368 - 12 368 100022 30 0 1 150 4 3 4 1 0 113 0 15 40 chain 111797 chr7 159138663 + 12594827 12596347 LTR12C 1709 - 0 1709 33721 7 0 1 74 1 0 87 1 0 77 10 9 23 1 7 196 20 13 90 0 47 89 18 159 320 7 8 28 8 10 168 17 18 278 chain 5332 chr7 159138663 + 12598537 12598596 LTR9 672 - 613 672 191706 59 chain 5831 chr7 159138663 + 12633080 12633147 L1PA3long 6157 + 6090 6157 186863 67 chain 15835 chr7 159138663 + 12639784 12640082 L1PB1 5432 + 5122 5392 138841 15 1 0 7 1 0 13 18 11 52 2 1 16 1 0 59 2 0 6 15 6 15 2 0 9 1 0 14 2 0 24 1 0 22 chain 80297 chr7 159138663 + 12641674 12642687 MER11A 1151 - 0 1151 43475 179 0 1 112 5 38 12 0 1 117 15 18 114 1 0 20 0 1 90 7 8 146 1 0 130 0 100 64 chain 30456 chr7 159138663 + 12699412 12699826 LTR7B 505 + 0 486 83523 104 0 10 61 0 38 12 3 27 28 0 2 83 1 0 76 23 22 23 chain 13603 chr7 159138663 + 12703170 12703324 HERVH-int 3825 + 3671 3825 145967 154 chain 30459 chr7 159138663 + 12704754 12705209 LTR7B 505 + 0 495 83516 108 0 10 57 0 38 12 3 27 28 29 0 85 1 0 76 14 13 29 1 0 12 chain 56027 chr7 159138663 + 12705502 12706224 MER4E1 777 - 0 777 55104 146 1 0 83 1 7 107 0 1 26 0 8 48 1 24 238 0 19 45 1 0 25 chain 124979 chr7 159138663 + 12715670 12717140 L1P2 5180 + 1140 2610 29399 38 0 1 69 1 0 196 4 5 401 3 1 476 2 0 30 0 3 32 0 1 159 1 0 58 chain 4574 chr7 159138663 + 12740178 12740338 MER21B 843 - 184 353 199956 19 1 0 4 89 99 47 chain 6868 chr7 159138663 + 12764090 12764174 MER2 342 - 47 131 178441 84 chain 5719 chr7 159138663 + 12792146 12792213 MER41A 554 + 398 466 187942 29 0 1 38 chain 82068 chr7 159138663 + 12799716 12800756 MER11C 1089 - 26 1089 42738 163 5 6 48 4 5 103 0 1 38 1 0 7 0 4 133 8 9 160 1 0 18 1 0 51 0 4 58 5 14 11 0 5 225 chain 43263 chr7 159138663 + 12812137 12812676 MER41A 554 - 0 539 65097 22 1 0 26 7 8 483 chain 21189 chr7 159138663 + 12830945 12831234 AluSc8 310 + 0 292 123245 46 0 7 70 20 23 140 7 0 6 chain 19637 chr7 159138663 + 12851617 12852013 L1PB1 5432 - 12 379 128290 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 12 5 8 3 0 16 8 7 36 1 0 16 2 1 52 2 0 10 20 15 9 1 0 20 1 0 9 1 2 50 chain 17432 chr7 159138663 + 12856230 12856484 L1PA8 5853 - 10 258 134430 83 1 0 19 7 6 47 1 0 7 4 3 70 3 1 12 chain 3895 chr7 159138663 + 12865473 12865517 MADE1 96 - 3 47 208925 44 chain 452649 chr7 159138663 + 12879192 12885333 L1PA7 6471 + 57 6466 8668 60 95 94 15 177 374 125 1 11 57 1 76 19 15 15 121 12 11 11 0 21 274 17 16 4 0 1 902 0 1 302 5 6 62 15 0 6 7 0 537 0 2 259 3 0 397 1 2 42 0 2 215 1 5 416 7 8 188 0 3 759 32 0 144 2 1 74 8 9 155 0 3 6 1 0 437 0 2 8 7 6 36 0 6 103 chain 25305 chr7 159138663 + 12892571 12892898 LTR17 781 - 457 781 103196 91 1 0 52 4 3 119 1 0 59 chain 7818 chr7 159138663 + 12893211 12893302 HERV17-int 4347 - 0 91 172200 91 chain 26127 chr7 159138663 + 12896900 12897176 AluYb8 318 - 10 286 99496 276 chain 14476 chr7 159138663 + 12916308 12916507 7SK 245 + 0 240 142961 113 15 56 71 chain 8403 chr7 159138663 + 12931088 12931426 MLT1A0 366 + 30 366 168838 30 28 27 56 185 184 39 chain 8707 chr7 159138663 + 12947762 12947883 MER30 238 - 2 114 167157 93 14 5 14 chain 17754 chr7 159138663 + 12971463 12971678 THE1A-int 1579 + 0 215 133555 215 chain 377663 chr7 159138663 + 12975266 12979849 L1P2 5180 - 594 5178 10827 631 0 3 30 0 1 896 4 0 1201 1 0 72 0 1 98 0 2 94 5 4 107 1 0 653 1 0 6 1 0 272 1 0 8 1 0 7 4 5 231 18 17 97 1 0 40 1 7 101 chain 29261 chr7 159138663 + 13013927 13014492 L1PB1 5432 - 10 509 87732 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 12 0 1 6 9 0 8 2 0 4 1 0 16 1 0 43 1 0 16 2 1 40 28 22 12 1 0 12 2 0 15 71 36 160 chain 19682 chr7 159138663 + 13028609 13028837 AluY 311 + 27 255 128153 91 1 0 14 0 1 122 chain 511484 chr7 159138663 + 13036362 13043050 L1PA7 6471 - 2 6471 6029 173 19 0 5 2 0 125 0 7 530 7 5 10 1 3 452 0 1 35 0 21 94 1 9 132 1 0 50 0 4 135 0 4 396 5 4 269 1 4 353 4 8 30 1 0 46 14 13 183 0 2 333 6 4 137 1 5 40 0 1 205 8 0 155 0 1 260 0 1 191 1 2 82 0 2 50 0 11 51 0 1 74 2 1 274 4 1 78 0 2 188 256 0 448 2 1 249 11 12 99 2 0 407 chain 12679 chr7 159138663 + 13050961 13051152 MSTA 426 + 208 408 149541 15 7 8 69 10 18 90 chain 100876 chr7 159138663 + 13064551 13065672 L1PA3long 6157 + 5038 6157 36543 250 1 0 19 1 0 850 chain 8357 chr7 159138663 + 13075470 13075598 MSTB-int 1649 + 348 476 169092 72 14 14 42 chain 24425 chr7 159138663 + 13092006 13092287 AluY 311 + 0 297 107936 57 0 16 224 chain 412827 chr7 159138663 + 13124391 13128948 L1PA3long 6157 - 8 4790 9724 1791 0 4 665 1 0 506 1 0 188 0 5 424 0 218 981 chain 12408 chr7 159138663 + 13134872 13135030 L1PA8A 6298 + 6131 6290 150606 142 1 2 15 chain 149986 chr7 159138663 + 13141599 13143290 SVA_D 2077 + 55 2056 24611 632 0 40 163 0 269 28 0 1 200 0 1 4 9 8 655 chain 12064 chr7 159138663 + 13152645 13152825 MER30 238 + 38 236 151926 66 7 0 6 3 28 98 chain 500886 chr7 159138663 + 13160471 13166606 L1PA6 6164 - 18 6164 6792 342 0 4 15 3 1 16 0 3 270 1 0 202 1 0 30 0 1 1363 1 0 201 4 0 151 0 4 353 0 1 4 2 3 150 4 0 707 0 1 230 7 8 838 4 3 6 0 1 434 6 23 204 11 10 118 8 0 449 chain 80417 chr7 159138663 + 13175557 13176602 MER11C 1089 + 0 1074 43423 264 0 3 48 5 22 253 8 9 166 6 7 12 0 8 258 11 10 14 chain 7667 chr7 159138663 + 13179142 13179238 MSTB2 466 - 11 107 173127 96 chain 25589 chr7 159138663 + 13207096 13207445 THE1B 368 - 12 368 101783 28 14 22 131 4 3 172 chain 12681 chr7 159138663 + 13221597 13221751 L1PA6 6164 - 5 159 149525 154 chain 7536 chr7 159138663 + 13224263 13224376 MER74A 558 - 105 220 173947 64 0 1 8 12 13 29 chain 3701 chr7 159138663 + 13251238 13251299 THE1D 372 - 306 357 211928 11 9 0 26 1 0 14 chain 17533 chr7 159138663 + 13252019 13252379 THE1B 368 - 0 368 134175 49 14 13 66 62 66 21 37 42 111 chain 545013 chr7 159138663 + 13308319 13314454 L1PA4 6152 - 6 6145 2072 501 0 1 2564 0 1 1329 0 1 887 2 0 112 0 4 170 1 0 569 chain 3321 chr7 159138663 + 13328749 13328786 MER57B1 401 + 294 331 218560 37 chain 7146 chr7 159138663 + 13336095 13336255 L1MA4 2864 + 2551 2738 176436 83 20 17 12 31 61 14 chain 54090 chr7 159138663 + 13344896 13345555 L1PA8 5853 - 847 1524 56197 376 0 15 28 0 1 228 0 2 27 chain 58154 chr7 159138663 + 13345555 13346714 L1PA8 5853 + 5016 5853 53900 55 0 1 148 3 1 160 306 0 183 1 0 36 10 8 13 31 22 34 28 26 35 7 6 16 1 0 65 0 1 27 chain 8986 chr7 159138663 + 13349723 13349832 MER57A1 433 + 324 433 165686 109 chain 23441 chr7 159138663 + 13391705 13391983 AluSg7 307 - 16 292 113426 162 2 0 114 chain 17240 chr7 159138663 + 13395621 13395918 MER4B 649 + 271 622 134956 11 10 9 63 3 47 22 28 28 57 0 8 63 0 1 19 1 3 20 chain 19493 chr7 159138663 + 13402704 13402934 L1PA5 6144 + 5900 6138 128674 213 0 8 17 chain 60958 chr7 159138663 + 13418413 13419122 L1PA5 6144 + 5438 6144 52352 246 2 1 318 2 0 141 chain 109222 chr7 159138663 + 13430014 13431368 L1PA7 6471 + 5107 6470 34390 42 4 6 41 2 1 402 0 4 18 1 3 47 0 2 28 3 1 288 0 3 314 2 1 5 0 1 152 1 0 4 chain 79894 chr7 159138663 + 13436255 13437222 L1PA7 6471 - 14 997 43642 289 0 4 113 0 1 350 0 2 80 0 4 15 2 7 118 chain 6791 chr7 159138663 + 13512752 13512827 L1PA2 6032 + 5955 6030 179018 75 chain 381905 chr7 159138663 + 13529469 13534842 L1PB1 5432 + 62 5430 10702 92 17 9 84 1 2 147 4 6 4 0 1 317 0 9 606 0 1 55 1 0 7 2 0 5 24 11 26 7 8 150 0 1 52 5 7 251 0 2 357 0 6 216 19 6 84 1 3 10 27 29 107 6 5 100 1 4 363 1 0 22 1 35 224 2 1 5 0 1 229 2 0 105 1 2 382 1 0 30 0 1 73 0 1 44 0 1 24 2 1 67 0 2 171 3 0 70 0 1 87 59 57 262 3 2 9 3 0 24 26 20 9 2 0 11 8 13 29 3 2 9 7 6 43 1 0 15 24 14 17 29 23 24 1 0 18 1 0 13 1 0 16 1 0 4 1 0 6 chain 10208 chr7 159138663 + 13542397 13542606 MLT2C2 476 + 40 253 159582 55 1 0 40 1 0 8 0 1 4 1 0 9 52 58 38 chain 24646 chr7 159138663 + 13568195 13568496 L1PA5 6144 - 0 301 106744 301 chain 8320 chr7 159138663 + 13612939 13613038 L1PB1 5432 - 4099 4199 169281 28 0 1 71 chain 86705 chr7 159138663 + 13626108 13627289 L1PA10 4194 - 33 1921 40878 11 1 0 22 23 16 53 0 1 69 1 0 159 3 7 233 0 636 150 0 1 153 0 2 24 2 0 12 7 2 60 9 88 189 chain 12286 chr7 159138663 + 13652478 13652633 L1PA8A 6298 + 6125 6281 151054 56 1 2 98 chain 46633 chr7 159138663 + 13661103 13661615 L1PA3long 6157 + 5644 6157 61514 179 0 1 333 chain 24774 chr7 159138663 + 13663193 13663458 AluYa5 310 + 45 309 106036 87 1 0 177 chain 29577 chr7 159138663 + 13664439 13664749 AluYb8 318 + 0 310 86285 310 chain 44873 chr7 159138663 + 13664758 13665268 L1PA5 6144 - 201 711 63204 510 chain 14357 chr7 159138663 + 13665278 13665448 L1PA5 6144 + 5974 6144 143353 170 chain 73700 chr7 159138663 + 13670293 13671096 L1PA2 6032 - 1 800 46675 683 4 0 116 chain 522782 chr7 159138663 + 13707712 13714094 L1PA7 6471 - 15 6463 4887 51 3 1 8 0 2 773 2 0 300 0 1 648 0 4 620 3 6 11 0 1 451 0 5 474 0 4 388 0 1 72 13 5 68 1 0 48 6 7 170 0 22 54 1 0 55 0 28 65 0 1 83 1 0 163 8 9 250 0 2 364 0 1 369 0 1 401 1 0 68 0 3 220 11 12 6 6 0 6 0 6 140 chain 55557 chr7 159138663 + 13714736 13715543 L1PB3 3668 + 2124 2915 55380 143 28 2 278 0 4 40 0 1 75 1 0 89 27 29 6 0 1 4 1 0 11 3 4 78 0 3 23 chain 143134 chr7 159138663 + 13716277 13717921 L1P1 4361 - 2699 4360 25632 793 0 2 389 7 8 92 7 6 168 0 1 53 0 14 135 chain 2375 chr7 159138663 + 13721127 13721188 L1MC1 2226 + 1960 2016 234408 17 22 17 22 chain 4836 chr7 159138663 + 13726005 13726064 Tigger3c 601 + 510 569 196960 59 chain 40861 chr7 159138663 + 13731272 13731815 MLT2A2 560 + 0 559 68080 186 5 9 113 0 1 88 5 16 146 chain 22720 chr7 159138663 + 13768057 13768336 THE1B 368 + 13 306 116984 33 0 15 108 1 0 137 chain 22011 chr7 159138663 + 13773494 13773738 L1PA2 6032 + 5778 6029 120176 96 0 1 137 0 6 11 chain 26895 chr7 159138663 + 13775531 13775814 AluYa5 310 - 0 283 96644 283 chain 398634 chr7 159138663 + 13805269 13809643 L1PA2 6032 + 2 6032 10149 254 1 0 318 0 1 122 0 7 737 0 1649 2942 chain 28191 chr7 159138663 + 13826359 13826669 AluYg6 310 + 0 310 92340 310 chain 34419 chr7 159138663 + 13833099 13833525 MLT2A1 477 - 0 477 77033 33 0 50 9 4 0 212 0 4 28 0 1 140 chain 126825 chr7 159138663 + 13842781 13845875 L1PA7 6471 + 32 3145 5918 275 0 18 86 5 3 148 0 1 108 2 1 110 0 1 734 0 1 473 0 2 271 0 1 62 1 0 314 1 0 504 chain 550901 chr7 159138663 + 13845894 13851917 L1PA2 6032 + 4 6031 1328 253 1 0 871 0 3 80 0 1 1733 0 1 614 2 1 2043 0 1 426 chain 137195 chr7 159138663 + 13851938 13855285 L1PA7 6471 + 3145 6465 5918 215 75 0 133 5 4 32 1 0 300 1 0 170 4 0 794 0 1 273 0 11 158 0 10 297 0 1 77 0 3 88 0 31 439 0 3 175 5 6 93 6 0 6 chain 29522 chr7 159138663 + 13856502 13856862 THE1B-int 1605 + 1234 1605 86562 215 0 11 145 chain 25147 chr7 159138663 + 13856866 13857212 THE1B 368 + 4 366 104014 32 14 29 109 2 1 25 0 2 164 chain 6651 chr7 159138663 + 13897485 13897566 MLT1C 463 - 38 119 180081 81 chain 15931 chr7 159138663 + 13911849 13912048 L1PA7 6471 - 10 201 138575 150 12 4 37 chain 22023 chr7 159138663 + 13915195 13915553 THE1B 368 - 0 368 120126 27 1 0 41 2 0 125 1 0 59 58 72 44 chain 19035 chr7 159138663 + 13916027 13916371 MSTA 426 - 23 410 130014 58 5 6 22 0 20 57 18 16 53 20 0 10 21 65 80 chain 20777 chr7 159138663 + 13958020 13958244 L1PA2 6032 + 5534 5758 124687 224 chain 24841 chr7 159138663 + 13958244 13958512 L1PA2 6032 + 5764 6032 105672 268 chain 23936 chr7 159138663 + 13977577 13977858 AluSp 311 - 19 300 110714 281 chain 24105 chr7 159138663 + 14009599 14009888 AluY 311 + 0 285 109718 126 4 0 159 chain 44574 chr7 159138663 + 14036877 14037489 THE1B-int 1605 - 7 612 63505 54 4 0 50 0 1 111 1 0 71 33 30 288 chain 4920 chr7 159138663 + 14050305 14050367 HY4 93 - 9 72 196048 12 0 1 50 chain 24337 chr7 159138663 + 14055574 14055863 AluYk4 311 + 7 296 108439 289 chain 75398 chr7 159138663 + 14083281 14084131 L1PA4 6152 - 14 867 45823 159 1 3 312 0 1 378 chain 69526 chr7 159138663 + 14084131 14084908 L1PA4 6152 + 4518 5295 48521 777 chain 4277 chr7 159138663 + 14087532 14087587 MER63D 473 + 87 142 203512 55 chain 16734 chr7 159138663 + 14102056 14102265 L1PA7 6471 + 6263 6467 136299 198 5 0 6 chain 14571 chr7 159138663 + 14102470 14102637 L1PA5 6144 - 1 169 142678 161 0 1 6 chain 9818 chr7 159138663 + 14102676 14102798 THE1C 375 + 154 282 161507 47 0 3 51 0 3 24 chain 62613 chr7 159138663 + 14106462 14107235 LTR17 781 + 0 774 51626 326 2 1 41 7 9 397 chain 11680 chr7 159138663 + 14135353 14135497 Tigger3b 1229 - 24 168 153564 144 chain 85898 chr7 159138663 + 14148153 14149233 MER11B 1079 - 0 1079 41194 8 0 1 14 2 3 176 0 1 111 5 0 97 1 0 350 0 4 55 3 0 9 0 1 249 chain 5973 chr7 159138663 + 14181050 14181132 L1MA5A 2387 - 81 165 185489 10 1 0 66 0 3 5 chain 138604 chr7 159138663 + 14199748 14201451 L1PA7 6471 + 4307 6470 26380 264 1 0 7 0 1 105 10 22 36 5 1 46 8 0 23 1 5 45 0 3 216 4 0 45 0 462 33 1 0 128 1 0 392 4 0 10 0 1 318 chain 4469 chr7 159138663 + 14208014 14208197 L1MEf 1413 + 654 836 201126 23 105 106 22 2 0 31 chain 25438 chr7 159138663 + 14208702 14209012 AluY 311 + 0 305 102502 124 7 2 179 chain 159937 chr7 159138663 + 14224415 14226628 L1PB1 5432 + 3229 5417 23344 381 14 19 96 7 13 168 0 1 28 2 0 233 0 1 46 1 0 399 7 8 91 0 1 22 0 1 67 4 0 88 3 2 209 1 2 9 3 0 24 28 22 9 3 1 50 2 1 10 7 6 44 1 0 15 3 0 7 14 5 19 8 6 13 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 538646 chr7 159138663 + 14318495 14324646 L1PA3long 6157 + 1 6157 3048 152 0 1 510 136 9 95 8 136 142 1 0 4264 0 4 843 chain 11922 chr7 159138663 + 14319157 14319289 L1PA3long 6157 - 4281 4413 149309 132 chain 42857 chr7 159138663 + 14335338 14336182 L1PA7 6471 - 7 552 65587 150 5 6 18 2 0 144 298 0 227 chain 206189 chr7 159138663 + 14336206 14338736 L1PA7 6471 + 3343 5878 18775 141 1 2 11 1 0 20 28 14 11 0 4 340 0 1 120 1 2 1347 0 14 247 7 6 122 1 0 42 0 1 90 chain 7829 chr7 159138663 + 14352525 14352885 Charlie1a 1436 + 737 1103 172136 18 170 176 45 59 60 4 1 0 63 chain 543596 chr7 159138663 + 14352886 14358915 L1PA3long 6157 + 0 6150 2256 151 1 2 109 9 0 76 0 1 429 8 136 4776 1 0 5 0 1 464 chain 248364 chr7 159138663 + 14394888 14398109 L1P2 5180 - 1009 3922 16343 313 1 2 645 1 2 113 322 0 314 0 3 957 0 5 377 2 1 9 4 9 163 chain 160695 chr7 159138663 + 14398127 14400077 L1PA6 6164 + 4201 6152 23236 171 0 2 175 0 6 94 1 0 50 4 0 104 30 14 301 0 1 29 0 1 166 1 0 98 0 3 52 1 2 264 0 1 373 1 9 35 chain 137999 chr7 159138663 + 14408572 14410277 L1PA7 6471 - 25 1727 26481 132 0 1 599 4 5 88 1 0 95 40 14 401 0 21 105 0 1 240 chain 27720 chr7 159138663 + 14432607 14432913 AluYf5 307 - 1 307 93970 306 chain 85789 chr7 159138663 + 14454901 14455848 L1PA4 6152 - 7 952 41232 16 2 0 929 chain 17999 chr7 159138663 + 14456100 14456424 THE1B 368 + 6 368 132859 102 8 9 60 46 84 45 17 16 46 chain 36866 chr7 159138663 + 14479521 14480018 LTR3B_ 500 - 0 497 73704 138 14 15 44 2 1 299 chain 82013 chr7 159138663 + 14498936 14499995 L1P2 5180 + 1200 2264 42753 334 7 13 282 1 0 435 chain 241341 chr7 159138663 + 14500000 14503003 L1PA7 6471 + 2582 6445 16702 59 6 1 356 0 1 97 0 4 384 9 2 43 5 2 18 0 4 12 6 9 262 1 0 771 0 2 9 4 3 51 0 4 105 0 10 530 0 850 151 1 0 123 chain 118897 chr7 159138663 + 14512180 14513719 THE1B-int 1605 + 27 1596 31457 238 0 2 61 2 9 95 0 25 144 1 0 577 1 0 92 1 0 50 10 9 267 chain 23023 chr7 159138663 + 14513728 14514084 THE1B 368 + 0 368 115520 14 36 51 101 7 6 20 4 0 108 0 2 66 chain 3091 chr7 159138663 + 14523598 14523639 MLT1D 503 + 461 502 223083 41 chain 52217 chr7 159138663 + 14548865 14549452 LTR14C 587 + 0 587 57489 587 chain 14340 chr7 159138663 + 14629633 14629798 L1HS 6032 + 5867 6029 143422 147 3 0 15 chain 9571 chr7 159138663 + 14646523 14646662 MER85 139 - 0 139 162733 27 11 0 8 0 11 93 chain 547433 chr7 159138663 + 14687255 14693293 L1PA2 6032 + 0 6030 1775 256 1 0 3354 1 0 1526 3 0 120 1 0 610 5 0 7 0 5 141 2 0 11 chain 15643 chr7 159138663 + 14698541 14698762 L1PA8 5853 - 1 217 139455 8 1 0 84 1 0 16 1 0 42 14 13 10 1 0 43 chain 121295 chr7 159138663 + 14698932 14700273 L1PA3long 6157 - 1575 2931 30604 1119 0 14 156 0 1 66 chain 140427 chr7 159138663 + 14700273 14701838 L1PA3long 6157 + 4590 6157 26084 1560 0 2 5 chain 29387 chr7 159138663 + 14735836 14736156 AluYb8 318 + 0 318 87132 132 2 0 186 chain 506126 chr7 159138663 + 14744104 14749604 L1PA2 6032 + 0 6032 6456 96 0 524 631 0 1 277 0 3 2697 0 4 1799 chain 40880 chr7 159138663 + 14810385 14811035 PABL_B 668 + 0 651 68049 213 21 65 10 46 0 36 8 9 17 2 1 63 2 0 21 1 4 80 0 2 130 chain 58156 chr7 159138663 + 14811147 14811902 MER4E 760 + 0 753 53898 24 0 1 65 3 0 60 25 27 356 2 1 80 1 0 139 chain 26439 chr7 159138663 + 14816995 14817342 THE1C 375 + 0 350 98273 135 0 4 43 5 4 164 chain 30427 chr7 159138663 + 14882940 14883258 AluYb8 318 - 0 318 83603 318 chain 2911 chr7 159138663 + 14910930 14910961 L1MA7 2200 - 119 150 226847 31 chain 13746 chr7 159138663 + 14915352 14915560 MER30 238 + 20 233 145450 5 3 0 85 22 31 23 1 0 69 chain 5792 chr7 159138663 + 14922504 14922578 L1PB4 2604 - 255 334 187239 20 0 5 54 chain 34100 chr7 159138663 + 14989338 14989738 L1PA5 6144 + 5745 6144 77479 381 1 0 18 chain 4776 chr7 159138663 + 15000653 15000732 LTR29 598 - 39 120 197624 19 11 13 49 chain 74912 chr7 159138663 + 15021955 15022913 L1PA8 5853 - 4 1009 46053 89 1 0 7 0 17 36 0 1 6 1 0 14 15 16 55 2 0 46 1 0 247 1 33 204 0 1 17 0 2 49 2 0 165 chain 66809 chr7 159138663 + 15022915 15023695 L1PA8 5853 + 4033 4814 49728 533 0 1 247 chain 29856 chr7 159138663 + 15027920 15028438 MER4B 649 - 124 644 85259 99 3 0 64 0 2 16 19 23 30 22 21 72 17 15 35 0 1 48 1 0 43 26 28 23 chain 4490 chr7 159138663 + 15053165 15053217 LTR47A 437 + 0 52 200907 52 chain 37081 chr7 159138663 + 15065002 15065471 MER4A1 472 + 0 471 73415 133 1 0 92 6 7 110 0 2 127 chain 4493 chr7 159138663 + 15093947 15094001 THE1D 372 - 318 372 200870 54 chain 46072 chr7 159138663 + 15094009 15094581 LTR6B 557 + 0 557 61971 47 1 0 312 0 1 37 18 0 98 0 1 4 0 1 33 0 1 22 chain 143651 chr7 159138663 + 15102768 15104403 L1PA5 6144 - 0 1637 25538 253 1 0 505 1 0 68 0 1 23 0 1 635 0 2 149 chain 76655 chr7 159138663 + 15104414 15105281 L1P1 4361 + 2975 3843 45139 192 0 1 675 chain 28626 chr7 159138663 + 15117032 15117345 AluYa5 310 - 0 310 90628 184 1 0 33 2 0 93 chain 26497 chr7 159138663 + 15128185 15128484 AluYk4 311 - 12 311 98055 299 chain 6735 chr7 159138663 + 15146890 15147058 L1MA6 2487 - 219 371 179431 36 71 55 61 chain 10926 chr7 159138663 + 15158840 15159017 MSTA 426 + 218 402 156501 27 19 18 36 10 18 85 chain 61999 chr7 159138663 + 15160458 15161241 L1PA8 5853 - 15 792 51901 78 7 6 13 2 1 52 1 0 8 1 0 72 2 0 44 1 0 26 0 1 476 chain 49140 chr7 159138663 + 15161241 15161888 L1PA8 5853 + 4380 5053 59474 60 0 5 5 2 0 75 0 14 12 0 5 6 8 3 94 14 22 53 1 0 273 0 2 44 chain 54673 chr7 159138663 + 15166150 15166915 MER4E 760 + 0 760 55924 26 3 0 24 0 1 97 1 11 7 1 0 5 0 9 8 25 10 25 3 0 48 0 1 91 1 3 78 1 0 89 7 1 189 1 2 35 chain 34415 chr7 159138663 + 15193599 15194049 L1PB1 5432 + 3409 3857 77038 318 7 5 125 chain 3919 chr7 159138663 + 15201380 15201425 MLT2D 439 + 394 439 208557 45 chain 28549 chr7 159138663 + 15280814 15281112 AluYk12 309 + 11 309 90971 298 chain 28029 chr7 159138663 + 15294622 15294992 L1PA7 6471 + 6099 6466 92895 214 13 9 71 0 1 72 chain 9104 chr7 159138663 + 15296317 15296469 Tigger3a 397 + 185 327 165052 22 19 13 51 0 1 37 5 0 18 chain 209504 chr7 159138663 + 15311759 15314479 L1PA5 6144 - 0 2801 18522 49 0 3 622 6 0 168 0 5 22 1 5 435 0 6 842 0 5 181 0 1 57 131 188 17 7 6 16 106 114 11 2 1 47 chain 28364 chr7 159138663 + 15359552 15359891 L1PA5 6144 + 5801 6138 91715 106 3 0 87 0 1 143 chain 3565 chr7 159138663 + 15377813 15377907 L1MB5 1630 - 9 107 214217 6 0 3 11 1 0 28 31 33 17 chain 15329 chr7 159138663 + 15410605 15410798 L1PA16 3655 + 2455 2652 140396 24 0 4 169 chain 8118 chr7 159138663 + 15427862 15427983 MER85 139 + 0 133 170386 45 0 2 35 10 20 31 chain 16379 chr7 159138663 + 15435898 15436554 LTR12D 1347 - 325 907 137258 12 34 14 59 359 162 69 0 18 10 12 28 11 0 109 90 chain 3891 chr7 159138663 + 15436265 15436311 LTR12D 1347 - 595 641 209011 46 chain 2877 chr7 159138663 + 15436330 15436362 LTR12D 1347 - 588 620 200842 32 chain 8231 chr7 159138663 + 15436575 15436672 LTR12D 1347 - 657 754 169774 97 chain 211065 chr7 159138663 + 15512698 15515323 L1PA7 6471 + 3633 6468 18426 409 16 202 24 0 1 237 1 4 9 0 2 58 0 3 82 6 9 151 0 1 370 0 4 413 1 4 82 0 2 317 0 1 292 2 3 11 0 3 132 3 0 9 chain 492533 chr7 159138663 + 15556997 15563470 L1PA7 6471 + 4 6467 7242 196 0 1 206 2 0 5 5 2 209 0 1 30 0 5 12 0 1 115 27 22 21 248 0 12 0 248 273 4 11 104 1 0 200 4 5 164 9 20 313 0 1 460 40 0 644 1 0 103 1 0 6 0 1 102 0 1 51 4 8 55 1 0 217 2 0 5 4 5 735 1 0 5 1 2 77 2 1 296 1 0 53 0 1 186 0 4 422 0 3 173 0 11 500 23 20 123 0 1 9 4 0 6 chain 13560 chr7 159138663 + 15583343 15583574 L1PB1 5432 - 400 598 146131 59 47 14 125 chain 16124 chr7 159138663 + 15583574 15583983 L1PB1 5432 + 5044 5422 137984 59 1 2 9 3 0 24 1 0 6 1 0 12 18 12 52 2 1 16 1 0 45 1 0 7 109 93 9 1 0 13 1 0 18 chain 554245 chr7 159138663 + 15586934 15592958 L1PA2 6032 + 6 6031 917 334 1 2 2226 0 1 1944 1 0 1353 1 6 6 5 0 153 chain 4794 chr7 159138663 + 15606757 15606811 THE1B 368 - 314 368 197427 54 chain 28327 chr7 159138663 + 15612643 15612943 AluYb8 318 - 4 304 91843 300 chain 47033 chr7 159138663 + 15626345 15627212 MER11B 1079 - 37 1079 61177 165 0 1 50 8 9 16 50 63 13 7 31 21 111 112 17 0 2 5 4 1 12 0 1 15 24 12 24 0 125 13 4 21 88 0 5 220 chain 3670 chr7 159138663 + 15673815 15673859 MER20 218 - 6 50 212389 44 chain 9020 chr7 159138663 + 15751867 15751994 MER85 139 - 0 137 165491 40 8 18 79 chain 21403 chr7 159138663 + 15827818 15828144 MER75 514 - 1 341 122497 25 1 2 151 3 12 35 1 2 33 24 27 53 chain 25186 chr7 159138663 + 15836398 15836720 AluY 311 + 0 310 103819 47 11 5 79 1 2 98 8 1 78 chain 26569 chr7 159138663 + 15883107 15883405 AluY 311 + 1 303 97763 131 0 4 167 chain 22138 chr7 159138663 + 15886705 15886977 AluSg7 307 - 36 307 119629 62 6 5 204 chain 25933 chr7 159138663 + 15897918 15898275 THE1A 353 + 0 353 100287 13 2 0 34 0 1 46 1 0 18 0 1 6 7 6 77 2 0 151 chain 101720 chr7 159138663 + 15921303 15922981 L1PA8 5853 - 7 1376 36337 83 1 0 22 3 2 59 6 5 67 3 1 41 5 4 91 0 1 21 10 22 285 0 12 121 2 0 112 309 0 308 1 0 75 20 4 33 chain 3044 chr7 159138663 + 15940357 15940394 MER3 215 + 172 209 224116 37 chain 52296 chr7 159138663 + 15953391 15954243 L1PB1 5432 + 4605 5424 57432 24 4 0 431 0 4 9 0 4 22 5 0 13 7 6 29 33 26 47 2 1 10 11 10 40 1 0 15 3 0 15 9 0 11 13 10 16 2 0 22 1 0 16 6 5 13 1 0 16 1 0 4 chain 550610 chr7 159138663 + 15979856 15985880 L1PA2 6032 + 2 6028 1362 70 1 2 139 0 1 41 2 1 2793 1 0 165 0 3 94 1 0 2717 chain 37860 chr7 159138663 + 15995471 15995929 L1PA5 6144 - 0 460 72328 11 1 3 132 4 3 306 0 1 4 chain 49135 chr7 159138663 + 15995929 15996526 L1P1 4361 + 3741 4341 59644 125 0 3 241 0 2 32 5 4 149 0 1 7 1 0 23 2 1 12 chain 108315 chr7 159138663 + 16000000 16001395 L1PA8 5853 + 4448 5853 34613 181 4 0 7 0 4 369 2 0 78 1 0 54 0 21 92 0 1 260 0 1 48 2 0 46 2 0 69 20 18 43 2 1 19 1 0 31 6 4 58 chain 28437 chr7 159138663 + 16005931 16006266 L1PA7 6471 + 6115 6449 91431 206 1 0 128 chain 407646 chr7 159138663 + 16029503 16034890 L1PA8 5853 - 6 5432 9861 79 9 8 17 1 0 37 7 6 21 1 0 71 2 0 44 1 0 33 3 6 4 0 1 199 0 1 237 0 53 30 0 1 121 0 1 79 0 1 350 9 1 117 52 19 108 0 4 3 0 2 264 0 1 506 1 0 102 4 6 5 2 0 350 0 4 43 1 2 13 0 4 229 76 77 102 12 16 194 0 4 383 1 3 34 0 5 115 0 1 96 0 1 20 0 3 5 6 3 45 0 5 106 14 18 83 1 4 138 8 0 64 1 0 23 2 1 451 3 0 22 10 4 217 chain 6965 chr7 159138663 + 16036726 16036810 L1PA8 5853 + 5765 5849 177711 84 chain 72321 chr7 159138663 + 16052559 16053678 L1PB2 3958 - 288 1407 47325 42 11 10 64 2 1 102 3 0 13 2 0 58 64 62 11 2 0 40 0 4 34 5 10 31 0 1 135 16 18 32 0 1 29 2 1 5 0 2 40 1 0 69 1 0 138 0 1 4 1 0 33 1 0 128 chain 4302 chr7 159138663 + 16076071 16076154 MER61A 341 + 259 341 203193 18 1 0 7 1 2 14 10 9 32 chain 2643 chr7 159138663 + 16078495 16078524 MER3 215 - 139 168 231111 29 chain 23577 chr7 159138663 + 16082651 16082948 AluY 311 + 16 311 112699 114 1 2 102 3 0 77 chain 17772 chr7 159138663 + 16120110 16120392 THE1B 368 + 0 302 133505 131 2 1 19 1 2 16 1 0 8 9 10 11 0 3 5 7 25 11 1 0 60 chain 84971 chr7 159138663 + 16140169 16141236 L1PA7 6471 - 1893 2960 41470 562 7 6 222 19 27 8 4 0 147 1 0 83 3 1 11 chain 148934 chr7 159138663 + 16141236 16143091 L1PA7 6471 + 4600 6469 24767 71 0 4 57 7 17 723 0 1 149 2 0 96 0 3 415 10 11 160 1 5 5 4 0 142 3 0 10 chain 5208 chr7 159138663 + 16173854 16173930 Tigger2b_Pri 1066 + 826 908 192940 15 4 10 57 chain 14382 chr7 159138663 + 16193872 16194059 L1PA8A 6298 - 7 199 143264 93 1 2 36 0 1 52 0 3 5 chain 433630 chr7 159138663 + 16199005 16204730 L1PA7 6471 - 182 5616 9223 52 5 9 43 15 0 404 0 21 50 0 10 70 0 7 20 0 4 262 8 7 218 0 4 24 1 0 4 0 1 266 3 5 257 25 4 545 4 2 52 0 1 212 1 0 153 0 2 13 14 18 69 0 4 770 336 0 74 2 1 586 0 5 67 0 3 472 0 3 281 0 4 214 0 7 113 7 8 13 chain 23794 chr7 159138663 + 16209933 16210272 LTR12E 1234 - 8 348 111509 30 1 0 66 18 21 86 10 9 128 chain 22226 chr7 159138663 + 16224689 16225057 THE1B 368 - 0 368 119229 75 1 0 44 41 51 29 1 0 8 8 0 44 12 13 85 1 0 19 chain 75899 chr7 159138663 + 16237346 16238314 LTR5_Hs 974 + 0 974 45547 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 556965 chr7 159138663 + 16256053 16262082 L1PA2 6032 + 1 6032 612 5781 0 2 248 chain 8127 chr7 159138663 + 16287694 16287821 AluJr 308 + 11 143 170348 36 9 15 65 1 0 16 chain 370183 chr7 159138663 + 16288221 16294359 L1PA6 6164 + 3 6151 11089 341 47 20 54 1 0 27 99 65 56 88 12 165 22 1 49 1 18 128 0 1 463 0 8 613 1 0 154 1 2 4 1 0 150 1 0 80 0 1 909 8 333 44 0 2 394 1150 966 58 0 1 1029 chain 97898 chr7 159138663 + 16292125 16293270 L1P1 4361 - 612 1758 37303 372 0 1 773 chain 167977 chr7 159138663 + 16294500 16296546 L1PA7 6471 + 4393 6466 22287 705 1 0 522 2 1 18 0 1 46 12 14 25 0 9 127 1 20 511 0 1 66 3 0 7 chain 23174 chr7 159138663 + 16319452 16319816 THE1B 368 - 0 368 114792 125 55 45 30 1 0 104 5 20 44 chain 23807 chr7 159138663 + 16341677 16341946 AluY 311 + 38 308 111430 94 0 1 175 chain 29559 chr7 159138663 + 16366935 16367252 AluYb8 318 + 0 316 86378 132 1 0 184 chain 96915 chr7 159138663 + 16390793 16392027 L1PA8 5853 + 4604 5847 37579 43 1 0 359 2 0 3 6 0 19 1 2 44 0 3 485 1 0 46 2 0 53 1 0 18 2 1 9 2 0 38 0 21 11 2 1 71 0 1 15 chain 3723 chr7 159138663 + 16405667 16405938 MLT1A0 366 - 85 366 211598 25 140 148 34 58 60 14 chain 37242 chr7 159138663 + 16408704 16409181 LTR2B 499 - 0 494 73181 182 1 0 8 0 1 178 0 19 37 3 0 61 0 1 7 chain 548059 chr7 159138663 + 16417737 16423765 L1PA3long 6157 - 0 6151 1700 843 0 4 321 0 118 464 0 1 4400 chain 27073 chr7 159138663 + 16455767 16456178 L1PA16 3655 + 2334 2777 96030 39 6 0 6 5 12 6 0 2 37 0 34 17 4 0 184 6 5 101 chain 31058 chr7 159138663 + 16496696 16497163 L1PA14 3548 - 93 543 82423 33 8 7 17 1 0 5 1 0 14 3 2 36 4 0 9 1 0 106 7 5 84 1 0 6 2 0 17 4 0 77 0 1 31 chain 7969 chr7 159138663 + 16509722 16509820 Tigger2a 444 + 282 380 171227 98 chain 23092 chr7 159138663 + 16514546 16514895 THE1B 368 - 0 368 115186 75 12 17 78 2 0 13 14 13 61 4 5 47 0 15 25 0 1 18 chain 56584 chr7 159138663 + 16525612 16526682 L1PA8 5853 + 5110 5853 54796 85 0 12 62 0 1 294 1 0 43 3 1 70 2 1 9 5 4 48 2 1 20 334 0 92 chain 70364 chr7 159138663 + 16546939 16547996 L1MA2 4263 + 3073 4113 48231 108 23 23 66 0 1 73 7 8 214 1 0 18 7 3 74 2 1 131 16 13 149 12 10 9 2 1 4 0 1 72 13 6 47 1 0 8 chain 115888 chr7 159138663 + 16578624 16580179 THE1D-int 1627 + 13 1615 32499 24 1 0 47 3 0 249 9 10 129 0 1 27 1 0 156 4 54 72 1 4 103 7 5 402 1 4 25 22 18 15 0 1 215 4 3 38 chain 24967 chr7 159138663 + 16580191 16580556 THE1D 372 + 0 372 104973 168 43 51 5 1 0 148 chain 11643 chr7 159138663 + 16584659 16584801 L1PA8 5853 + 5713 5853 153728 31 1 0 16 1 0 93 chain 230472 chr7 159138663 + 16611717 16614424 L1PA7 6471 + 3743 6461 17284 87 1 2 177 0 3 219 0 1 463 0 1 253 1 0 404 0 1 265 1 4 236 0 1 276 0 1 324 chain 10928 chr7 159138663 + 16614779 16614916 MER4D1 891 + 756 891 156496 50 1 0 16 1 0 69 chain 29011 chr7 159138663 + 16630173 16630647 LTR44 473 + 0 465 88935 39 40 54 91 37 12 191 0 2 76 chain 58537 chr7 159138663 + 16635029 16635791 MER4E 760 - 9 760 53680 217 7 6 95 1 0 35 6 1 26 4 0 133 2 1 5 0 1 39 1 0 171 1 2 19 chain 28107 chr7 159138663 + 16699477 16699801 L1PA5 6144 - 0 342 92619 154 0 1 13 0 17 157 chain 28538 chr7 159138663 + 16716694 16717019 LTR17 781 - 456 781 91006 325 chain 13707 chr7 159138663 + 16717332 16717496 HERV17-int 4347 - 0 168 145576 90 5 8 64 0 1 5 chain 17835 chr7 159138663 + 16718818 16719016 MER11B 1079 - 881 1079 133290 198 chain 9496 chr7 159138663 + 16779627 16779780 MER67C 710 + 531 686 163095 99 4 0 12 15 21 23 chain 27589 chr7 159138663 + 16789973 16790327 THE1A 353 + 0 353 94381 84 0 1 26 1 0 91 1 0 151 chain 6503 chr7 159138663 + 16827328 16827598 L1MB3 1562 - 7 276 181213 12 24 23 47 127 126 24 4 5 32 chain 159277 chr7 159138663 + 16828689 16830690 SVA_D 2077 - 0 2049 23430 9 8 0 127 0 20 485 47 0 19 8 57 13 1 0 28 0 78 203 0 2 88 74 32 8 1 0 169 0 40 122 40 0 197 0 4 318 6 0 30 chain 3174 chr7 159138663 + 16829318 16829365 SVA_D 2077 - 993 1041 131486 11 11 12 25 chain 5156 chr7 159138663 + 16829725 16829799 SVA_D 2077 - 775 849 75680 74 chain 21925 chr7 159138663 + 16853431 16853687 AluSx4 309 + 38 294 120522 256 chain 8800 chr7 159138663 + 16889088 16889282 L1PA17 2846 - 153 336 166647 44 1 0 15 61 57 25 5 0 19 1 0 23 chain 15310 chr7 159138663 + 16907508 16907786 L1MA8 2339 - 560 820 140462 38 23 18 44 0 1 5 1 0 30 12 7 28 14 7 51 1 0 31 chain 24902 chr7 159138663 + 16907786 16908078 AluSp 311 - 19 311 105329 292 chain 46780 chr7 159138663 + 16946587 16947346 L1PB1 5432 + 4685 5417 61387 127 4 3 186 0 1 100 14 12 24 1 0 9 31 25 39 0 1 8 2 1 16 1 0 41 0 4 14 3 0 15 8 0 16 12 9 10 2 0 24 1 0 21 5 3 10 1 0 9 1 0 4 chain 12501 chr7 159138663 + 16983082 16983236 LTR12C 1709 + 932 1086 150236 154 chain 119061 chr7 159138663 + 16987270 16988844 THE1B-int 1605 + 0 1605 31385 25 45 46 359 1 26 165 0 2 121 26 26 204 0 1 265 4 0 223 0 5 94 0 1 42 chain 54351 chr7 159138663 + 16998485 16999427 L1PA14 3548 - 92 1029 56132 15 3 1 26 18 16 8 1 0 12 4 2 34 5 1 10 5 4 28 1 10 62 0 1 5 1 0 33 81 74 109 2 0 5 2 0 47 2 0 14 3 1 143 1 0 107 1 0 18 14 32 31 5 3 68 2 1 16 chain 34820 chr7 159138663 + 17000017 17000470 L1PREC2 3366 - 1296 1753 76447 115 0 6 185 0 1 4 4 1 145 chain 14507 chr7 159138663 + 17040901 17041218 L1MA5A 2387 - 8 272 142870 4 1 0 13 2 0 22 1 0 6 6 4 15 23 9 11 1 0 62 26 0 11 15 12 29 1 0 26 2 0 40 chain 85960 chr7 159138663 + 17042997 17044082 MER11B 1079 - 0 1079 41172 11 11 9 289 8 2 405 0 5 99 3 0 259 chain 6501 chr7 159138663 + 17046568 17046669 MER30 238 + 40 164 181229 53 0 3 8 9 29 31 chain 84985 chr7 159138663 + 17056734 17057656 L1PA2 6032 - 1112 2034 41364 922 chain 101100 chr7 159138663 + 17057656 17058754 L1PA2 6032 + 4935 6032 36485 244 1 0 853 chain 213396 chr7 159138663 + 17090187 17092579 L1PA4 6152 - 9 2405 18263 134 0 1 705 0 2 1215 1 2 337 chain 107417 chr7 159138663 + 17092579 17093825 L1P1 4361 + 7 1272 34807 1084 1 20 161 chain 185093 chr7 159138663 + 17148819 17151223 MER4-int 2692 + 266 2686 20494 263 7 8 72 0 4 123 2 1 39 2 15 204 0 1 190 1 2 52 0 1 9 13 5 140 0 1 7 0 1 47 3 0 129 5 9 140 0 2 163 0 1 124 1 0 325 0 1 336 2 0 5 chain 13805 chr7 159138663 + 17151776 17152013 MER2 342 - 65 307 145250 174 49 54 14 chain 117096 chr7 159138663 + 17153262 17154762 L1PA8 5853 - 0 1521 32094 93 1 0 19 2 1 107 4 5 20 2 0 44 1 0 119 0 6 429 7 9 52 8 12 190 0 13 18 1 2 350 9 8 24 chain 83638 chr7 159138663 + 17156383 17157426 L1PA8A 6298 - 7 1063 42057 16 1 2 113 0 1 52 12 14 129 1 2 22 0 11 390 0 1 48 2 1 111 3 0 143 chain 6564 chr7 159138663 + 17185701 17185825 Tigger2a 444 - 66 182 180758 41 32 24 51 chain 147796 chr7 159138663 + 17200926 17202606 L1PA4 6152 - 9 1695 24904 733 4 7 20 7 9 709 0 1 207 chain 115882 chr7 159138663 + 17202606 17203964 L1PA4 6152 + 3084 4444 32502 44 5 6 64 6 5 486 3 1 664 0 4 86 chain 29054 chr7 159138663 + 17204798 17205108 AluYa5 310 - 0 310 88739 310 chain 3357 chr7 159138663 + 17207122 17207161 MLT2A2 560 - 2 41 217938 39 chain 25673 chr7 159138663 + 17208661 17208944 AluY 311 + 1 301 101394 56 0 16 59 0 1 168 chain 11881 chr7 159138663 + 17232703 17232908 L1PA17 2846 + 2500 2693 152692 17 13 7 9 1 0 58 3 0 41 1 0 15 5 4 42 chain 539411 chr7 159138663 + 17254841 17260978 L1PA4 6152 + 0 6152 2911 102 1 2 569 10 13 58 1 0 99 0 1 125 0 11 966 1 0 374 2 0 1233 1 0 105 1 0 2483 0 5 6 chain 19026 chr7 159138663 + 17263745 17263955 L1PA2 6032 - 0 211 130044 145 0 1 65 chain 10830 chr7 159138663 + 17263955 17264071 L1PA2 6032 + 5701 5817 156865 116 chain 74632 chr7 159138663 + 17283401 17284214 L1PA3long 6157 - 0 813 46193 813 chain 33547 chr7 159138663 + 17291963 17292358 L1PA6 6164 - 4 396 78320 8 3 0 384 chain 12533 chr7 159138663 + 17297190 17297362 L1MB3 1562 - 157 328 150105 8 0 1 44 1 0 69 1 0 49 chain 24382 chr7 159138663 + 17307811 17308146 THE1B 368 + 17 368 108187 27 8 23 102 1 0 22 2 0 167 0 4 6 chain 3862 chr7 159138663 + 17351589 17351631 MER5A 189 + 31 73 209419 42 chain 15196 chr7 159138663 + 17358442 17358686 Tigger2a 444 - 165 444 140785 26 9 14 68 0 1 56 1 16 33 19 33 32 chain 27392 chr7 159138663 + 17377100 17377398 AluYa5 310 - 13 310 94997 171 1 0 126 chain 23551 chr7 159138663 + 17377587 17377839 AluY 311 + 46 299 112842 86 0 1 166 chain 7067 chr7 159138663 + 17381214 17381483 MER33 330 + 44 322 176962 40 30 26 37 1 7 5 1 0 23 113 121 19 chain 470216 chr7 159138663 + 17388436 17394353 L1PA7 6471 - 1 6284 8026 12 1 6 139 1 15 191 191 8 474 4 0 366 0 132 322 0 2 121 5 13 98 0 1 171 1 376 327 0 1 4 1 0 143 0 4 571 8 4 154 0 7 93 1 0 7 0 4 42 0 2 19 0 2 380 0 4 1013 1 5 77 1 3 218 17 20 90 0 1 425 12 0 216 chain 31231 chr7 159138663 + 17402003 17402349 HERV-Fc1_LTR1 345 - 0 345 82108 65 1 0 280 chain 35258 chr7 159138663 + 17422222 17422705 LTR2B 499 - 0 499 75852 182 1 0 10 0 1 112 6 5 60 10 29 26 3 0 60 0 1 13 chain 86993 chr7 159138663 + 17426733 17427852 L1PA8 5853 - 0 1129 40785 6 0 6 81 1 0 19 2 1 52 1 0 9 1 0 18 0 1 52 2 0 8 0 1 35 1 0 551 6 7 15 0 4 95 1 4 53 0 1 110 chain 114701 chr7 159138663 + 17433459 17435028 THE1B-int 1605 - 0 1605 32883 111 0 1 448 16 7 12 15 17 4 1 0 46 2 3 18 3 0 226 23 24 197 33 59 15 1 0 4 0 1 78 0 6 35 1 13 280 chain 25290 chr7 159138663 + 17444554 17444892 L1PA7 6471 + 6144 6466 103271 171 0 1 26 0 1 22 10 0 47 9 3 44 2 0 7 chain 11358 chr7 159138663 + 17450991 17451140 L1PA8 5853 + 5704 5851 154869 36 2 1 19 1 0 91 chain 267278 chr7 159138663 + 17454129 17457749 HERVH-int 3825 + 22 3825 15327 175 1 0 136 12 11 66 11 10 53 8 277 28 1 0 263 0 10 178 30 0 83 15 8 111 9 0 287 2 1 58 44 29 266 35 39 297 0 1 5 5 4 60 0 1 178 5 6 137 11 0 216 1 0 168 29 6 163 1 0 472 chain 42198 chr7 159138663 + 17465868 17466395 L1PA7 6471 + 5942 6470 66397 344 0 1 27 15 14 124 1 0 4 1 3 11 chain 26385 chr7 159138663 + 17493440 17493883 L1PB 1623 - 1002 1500 98468 36 0 3 73 11 27 49 20 30 102 12 35 39 0 1 10 12 17 8 2 0 4 1 0 64 chain 80442 chr7 159138663 + 17498152 17499216 MER11A 1151 - 1 1151 43407 289 41 1 24 0 26 111 0 4 120 1 0 126 22 24 130 5 1 116 0 99 79 chain 27593 chr7 159138663 + 17502621 17502975 THE1B 368 + 14 368 94367 29 0 5 124 2 1 19 4 0 176 chain 3165 chr7 159138663 + 17563302 17563335 LTR82A 830 - 377 410 221656 33 chain 69077 chr7 159138663 + 17576374 17577337 L1PB1 5432 + 3207 4172 48775 318 3 5 39 7 6 7 0 1 119 1 0 14 14 16 82 5 6 5 2 0 347 chain 113785 chr7 159138663 + 17602578 17604024 L1PA8A 6298 + 4831 6291 33153 172 0 2 60 0 4 127 0 2 153 3 0 88 1 8 42 2 1 37 0 2 41 2 3 43 1 0 290 1 2 204 0 1 52 1 0 126 chain 486512 chr7 159138663 + 17605658 17611300 L1PA5 6144 - 0 6141 7501 842 0 5 340 2 1 5 0 1 419 0 496 360 1 0 499 1 0 491 0 3 612 0 1 618 8 12 151 17 0 4 0 9 248 1 0 262 0 1 761 chain 28692 chr7 159138663 + 17612177 17612485 AluYb8 318 + 0 307 90357 98 1 0 209 chain 90937 chr7 159138663 + 17621947 17623096 L1PA8A 6298 + 5107 6292 39314 61 1 0 55 0 1 42 10 20 177 12 33 159 8 9 444 0 2 81 4 6 95 chain 18980 chr7 159138663 + 17682198 17682564 THE1B 368 + 7 368 130159 16 40 0 10 7 22 19 0 10 23 0 1 64 9 8 18 35 45 125 chain 118228 chr7 159138663 + 17682564 17684119 THE1B-int 1605 + 0 1605 31718 20 6 7 405 0 25 128 0 3 75 13 13 4 1 0 101 10 11 17 1 22 542 4 5 26 1 0 201 chain 16402 chr7 159138663 + 17684122 17684431 THE1B 368 + 3 337 137203 41 9 24 104 2 1 25 13 74 8 50 0 57 chain 26466 chr7 159138663 + 17708088 17708412 L1PA6 6164 + 5835 6162 98181 248 0 3 76 chain 10770 chr7 159138663 + 17735061 17735370 MER47A 366 + 55 366 157110 136 155 157 18 chain 4718 chr7 159138663 + 17751576 17751632 MLT2C2 476 + 133 190 198311 50 0 1 6 chain 19001 chr7 159138663 + 17766688 17766926 L1PA7 6471 + 6223 6464 130109 66 0 1 30 0 2 142 chain 49094 chr7 159138663 + 17769600 17770145 L1PA4 6152 - 1 547 59673 332 0 1 213 chain 7198 chr7 159138663 + 17772840 17772970 LTR12F 595 + 55 260 176076 36 28 94 21 0 9 45 chain 514539 chr7 159138663 + 17774341 17780444 L1PA5 6144 + 0 6142 5722 129 46 60 677 0 2 71 0 4 226 9 0 825 0 9 498 6 0 696 4 0 456 1 9 1088 0 22 522 1 0 518 0 1 182 2 1 146 chain 38428 chr7 159138663 + 17791476 17792031 L1M1 2793 - 127 682 71537 38 1 0 16 0 5 109 0 4 60 24 28 83 17 0 191 3 8 13 chain 297946 chr7 159138663 + 17803161 17807448 L1PB1 5432 + 1452 5419 13533 394 0 4 549 0 1 65 0 10 15 10 4 210 1 0 125 1 4 9 14 3 46 0 3 257 0 12 100 0 1 222 0 4 196 6 9 41 0 1 11 25 27 610 1 0 95 13 18 130 6 3 335 0 12 125 16 14 21 1 0 5 360 26 42 0 1 8 2 1 16 1 0 43 1 0 16 3 0 15 9 0 10 30 25 24 1 0 21 1 0 13 1 0 15 chain 4401 chr7 159138663 + 17808721 17808773 MER1B 344 + 29 81 201913 52 chain 513946 chr7 159138663 + 17846298 17852748 L1PA7 6471 + 16 6470 5784 193 0 1 119 4 1 6 0 3 71 0 2 126 2 0 84 31 13 125 0 2 6 0 9 408 6 16 87 0 1 271 5 9 599 1 0 343 4 5 116 16 0 61 20 11 44 0 3 20 0 2 35 0 7 489 0 1 224 1 0 56 0 2 196 0 3 41 4 2 53 33 0 126 2 0 393 0 5 42 4 1 111 0 1 115 0 4 297 2 3 361 1 0 170 13 11 92 0 2 82 0 2 48 0 1 477 10 38 37 0 1 156 0 1 11 chain 4382 chr7 159138663 + 17913021 17913075 Charlie1b 519 + 436 489 202176 49 1 0 4 chain 24189 chr7 159138663 + 17923188 17923523 L1PA7 6471 - 5 330 109280 10 2 0 4 1 0 5 0 1 193 23 15 97 chain 3696 chr7 159138663 + 18024241 18024300 MER33 330 - 39 97 211989 36 6 5 17 chain 499305 chr7 159138663 + 18045357 18052901 L1PA7 6471 - 11 6455 6870 323 1 0 427 1 0 6 0 1 80 1212 0 674 1 0 535 0 4 146 0 1 651 1 0 74 5 4 48 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127696 chr7 159138663 + 18227551 18229075 L1PA8A 6298 + 4759 6290 28645 618 0 3 109 1 4 61 19 20 108 1 0 458 1 2 148 chain 13688 chr7 159138663 + 18290397 18290591 L1PA11 4918 - 401 586 145641 9 4 0 20 1 0 16 2 0 66 1 0 9 1 0 65 chain 11236 chr7 159138663 + 18332998 18333122 L1PA4 6152 + 5858 5982 155276 124 chain 30142 chr7 159138663 + 18337908 18338242 L1PA2 6032 - 0 336 84341 152 0 2 182 chain 21455 chr7 159138663 + 18356464 18356720 AluY 311 + 30 286 122310 256 chain 18343 chr7 159138663 + 18587157 18587429 Tigger1 2417 - 323 588 131949 76 25 19 51 1 0 119 chain 8094 chr7 159138663 + 18603371 18603461 L1PA6 6164 - 2 92 170523 90 chain 4012 chr7 159138663 + 18628529 18628575 Tigger4a 237 - 190 236 207214 46 chain 28795 chr7 159138663 + 18649270 18649600 L1PA5 6144 - 15 347 89914 253 0 2 77 chain 18324 chr7 159138663 + 18649600 18649806 L1PA5 6144 + 5560 5766 132005 206 chain 23072 chr7 159138663 + 18748725 18749025 L1PA8A 6298 - 17 312 115289 91 9 8 23 4 0 173 chain 503901 chr7 159138663 + 18773889 18779970 L1PA6 6164 - 34 6108 6611 261 7 0 638 0 1 42 5 6 218 0 1 314 0 1 752 4 5 687 0 1 13 0 1 340 33 8 91 0 1 4 5 4 415 0 1 1180 0 1 320 0 17 240 1 0 113 1 0 209 0 1 188 chain 28622 chr7 159138663 + 18785154 18785468 AluYb8 318 - 4 318 90650 314 chain 33994 chr7 159138663 + 18798836 18799336 MER1A 529 + 0 529 77624 126 25 44 6 3 0 267 23 36 50 chain 5099 chr7 159138663 + 18814207 18814272 Tigger1 2417 - 204 269 194099 65 chain 25284 chr7 159138663 + 18872362 18872648 AluSp 311 - 16 301 103290 163 1 0 122 chain 15744 chr7 159138663 + 18902939 18903184 MER30 238 + 2 238 139128 53 25 3 39 0 19 11 3 0 69 3 0 42 chain 10998 chr7 159138663 + 18903541 18903736 L1MB1 2102 - 289 482 156212 59 1 0 7 1 0 8 1 0 19 33 34 66 chain 2815 chr7 159138663 + 18904405 18904470 L1MB3 1562 + 1439 1505 228529 11 6 8 20 7 6 21 chain 93513 chr7 159138663 + 18918134 18919485 L1PA14 3548 + 2126 3450 38506 260 1 0 17 11 12 70 0 2 49 1 0 152 1 0 228 1 0 24 2 0 2 1 0 11 2 0 48 2 0 4 2 0 109 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5853 52182 22 2 0 70 8 9 180 0 1 81 4 2 13 6 25 171 2 1 48 2 0 68 2 1 10 1 0 51 2 1 19 2 1 92 chain 509278 chr7 159138663 + 19073864 19080005 L1PA6 6164 - 4 6164 6220 143 38 25 159 1 2 251 2 0 369 1 2 52 0 1 72 0 1 781 0 2 35 0 13 817 0 1 244 0 1 467 1 0 395 0 2 153 0 9 115 0 1 715 0 8 112 21 14 1008 0 1 189 chain 511068 chr7 159138663 + 19085367 19091505 L1PA6 6164 + 1 6160 6064 387 16 15 623 4 5 9 0 4 121 0 1 1003 4 5 158 0 2 97 5 0 152 0 1 605 0 1 506 2 0 302 1 0 189 0 1 420 12 24 18 0 5 145 1 3 6 2 0 639 0 1 711 chain 31009 chr7 159138663 + 19099580 19099914 L1PA2 6032 + 5697 6031 82495 334 chain 5044 chr7 159138663 + 19109549 19109700 LTR52 417 + 0 150 194686 16 1 0 6 13 0 7 54 67 54 chain 13455 chr7 159138663 + 19181357 19181509 AluSc5 308 + 126 278 146506 152 chain 34245 chr7 159138663 + 19203919 19204288 L1PA2 6032 - 3 372 77288 369 chain 24444 chr7 159138663 + 19227112 19227413 AluSc 308 + 5 308 107833 178 0 1 53 0 1 70 chain 548809 chr7 159138663 + 19228664 19234670 L1PA2 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13 130 0 3 81 4 3 4 0 1 49 4 5 16 0 4 76 6 9 74 chain 5356 chr7 159138663 + 19279794 19279946 THE1C 375 - 202 375 191476 27 3 0 7 59 85 27 2 0 27 chain 141584 chr7 159138663 + 19284925 19286590 LTR12C 1709 + 0 1709 25887 757 0 2 53 0 40 258 2 1 6 2 0 76 3 4 27 0 4 481 chain 5381 chr7 159138663 + 19290346 19290404 L1PA5 6144 - 254 312 191181 58 chain 6994 chr7 159138663 + 19290404 19290493 L1PA5 6144 + 6058 6141 177503 77 6 0 6 chain 22919 chr7 159138663 + 19305707 19305963 AluY 311 + 52 308 116013 256 chain 66298 chr7 159138663 + 19398407 19399173 L1PA5 6144 + 5369 6135 49952 766 chain 17077 chr7 159138663 + 19399870 19400147 L1PA8 5853 - 0 262 135385 92 2 1 16 1 0 42 0 7 6 28 10 71 2 0 17 chain 77791 chr7 159138663 + 19414330 19415190 L1PA4 6152 - 9 873 44619 841 0 4 19 chain 66827 chr7 159138663 + 19424328 19425068 L1PA5 6144 - 648 1390 49718 220 0 2 520 chain 56941 chr7 159138663 + 19425068 19425709 L1PA5 6144 + 5502 6144 54567 443 0 1 198 chain 17017 chr7 159138663 + 19426933 19427331 L1PB1 5432 - 19 385 135547 9 1 0 13 1 0 21 1 0 23 25 20 14 8 0 17 3 0 16 1 0 29 0 1 13 24 22 48 17 11 9 1 0 13 1 0 17 21 19 46 1 0 5 chain 22855 chr7 159138663 + 19438801 19439086 AluY 311 + 4 289 116304 103 4 3 22 0 1 156 chain 22661 chr7 159138663 + 19472220 19472592 THE1D 372 + 0 372 117270 57 9 0 5 0 1 4 1 0 120 32 34 17 1 7 87 9 10 30 chain 4438 chr7 159138663 + 19475284 19475339 L1MC2 1988 - 69 124 201473 55 chain 11192 chr7 159138663 + 19493785 19493926 L1PB1 5432 - 4419 4563 155451 115 0 3 26 chain 34084 chr7 159138663 + 19499422 19499805 L1P1 4361 - 33 414 77490 23 1 0 155 1 0 203 chain 57192 chr7 159138663 + 19500010 19500634 L1PA2 6032 + 5405 6029 54410 624 chain 5231 chr7 159138663 + 19506828 19506884 L1PA2 6032 + 5974 6030 192715 56 chain 86822 chr7 159138663 + 19532705 19533729 L1PA5 6144 - 3 1027 40848 563 1 0 173 0 3 38 0 1 76 4 1 169 chain 25495 chr7 159138663 + 19546513 19546796 AluY 311 + 25 309 102243 107 0 1 176 chain 96032 chr7 159138663 + 19556870 19558006 L1PA5 6144 + 5003 6142 37810 288 0 4 72 0 2 38 0 2 586 1 0 140 4 0 7 chain 20317 chr7 159138663 + 19571719 19571992 THE1D-int 1627 + 1341 1612 126187 36 8 0 91 8 9 10 0 5 120 chain 520892 chr7 159138663 + 19581911 19588324 L1PA7 6471 - 1 6468 5070 4 1 0 7 2 0 542 1 11 289 0 3 11 4 6 255 0 1 381 6 5 275 0 12 410 0 1 299 0 1 460 1 0 163 0 1 38 7 5 191 0 3 279 0 7 56 0 4 39 0 3 75 1 0 145 1 0 39 0 2 250 0 1 32 5 9 167 1 0 747 0 4 247 1 2 55 0 3 18 0 2 91 0 1 22 12 16 152 4 1 150 10 8 288 2 1 177 chain 70070 chr7 159138663 + 19588796 19589719 LTR12 884 - 0 884 48361 484 0 22 36 1 2 85 62 0 205 0 1 25 1 0 24 chain 3229 chr7 159138663 + 19589419 19589464 LTR12 884 - 650 695 142462 45 chain 20309 chr7 159138663 + 19596844 19597123 L1PA7 6471 + 6185 6461 126207 91 14 11 21 16 16 137 chain 18059 chr7 159138663 + 19674406 19674608 L1P1 4361 - 1232 1434 131993 202 chain 56495 chr7 159138663 + 19674608 19675246 L1P1 4361 - 608 1245 54679 591 1 0 46 chain 188895 chr7 159138663 + 19675246 19677332 L1PA3long 6157 + 4070 6157 20157 1865 0 1 221 chain 222834 chr7 159138663 + 19678523 19681194 L1PA6 6164 - 3 2661 17718 329 0 1 7 0 1 15 0 1 476 3 6 17 1 0 153 2 3 810 0 1 138 0 1 588 27 5 31 0 1 74 chain 10306 chr7 159138663 + 19681194 19681311 L1PA6 6164 + 3350 3467 158724 117 chain 5159 chr7 159138663 + 19686899 19686976 MADE1 96 + 0 96 193456 40 6 25 31 chain 5593 chr7 159138663 + 19693714 19693879 LTR12 884 - 507 641 189151 19 17 24 17 39 13 33 11 0 24 1 0 4 chain 395428 chr7 159138663 + 19695270 19700240 HERV9-int 5642 - 818 5631 10260 274 0 1 234 0 2 396 0 1 727 0 4 168 15 2 501 3 0 1014 0 15 76 0 1 296 1 3 6 162 0 254 3 1 28 1 2 102 7 1 107 7 8 190 0 1 398 chain 2970 chr7 159138663 + 19699064 19699097 HERV9-int 5642 - 4539 4572 225685 33 chain 519880 chr7 159138663 + 19722996 19729048 L1PA2 6032 - 5 5743 5175 20 7 8 1917 0 2 958 1 0 1044 327 11 166 0 1 246 1 0 1365 chain 3084 chr7 159138663 + 19731563 19731599 LTR12C 1709 - 836 872 223256 36 chain 43170 chr7 159138663 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528876 chr7 159138663 + 19923591 19929732 L1PA4 6152 - 1 6150 4315 146 1 2 701 0 4 498 4 3 231 0 1 1273 3 4 90 0 1 1431 0 1 677 5 4 131 1 0 329 1 2 33 0 1 586 chain 84058 chr7 159138663 + 19935492 19936421 L1PA3long 6157 - 1 934 41880 54 0 4 875 chain 84713 chr7 159138663 + 19937264 19938195 L1PA2 6032 - 5 937 41634 335 1 2 595 chain 515024 chr7 159138663 + 19940209 19946307 L1PA4 6152 - 32 6152 5670 62 1 4 48 4 0 10 13 17 815 0 1 102 1 0 651 0 1 1701 0 5 326 0 2 321 2 3 141 0 5 143 8 7 596 9 12 279 0 1 327 3 5 535 chain 23273 chr7 159138663 + 19976821 19977105 L1PA8 5853 - 0 278 114332 93 1 0 16 1 0 56 2 1 5 1 0 73 2 0 34 chain 3449 chr7 159138663 + 19988106 19988145 MSTA-int 1630 + 17 56 216230 39 chain 513215 chr7 159138663 + 19988348 19994458 L1PA6 6164 - 2 6164 5862 10 1 0 844 6 5 184 0 1 432 5 8 306 0 4 1158 0 1 11 1 14 186 0 1 170 0 1 240 0 4 186 0 9 61 0 1 50 0 2 757 1 4 56 1 0 644 0 12 290 2 1 157 0 1 351 chain 48973 chr7 159138663 + 20015640 20016260 L1P1 4361 - 20 639 59770 12 2 1 23 1 0 373 10 0 8 0 10 20 0 1 171 chain 107316 chr7 159138663 + 20016261 20017555 L1PA7 6471 + 5133 6457 34890 372 0 1 116 0 2 82 1 0 4 7 5 136 0 30 576 chain 67752 chr7 159138663 + 20018828 20021765 L1MA1 4479 - 289 4188 49345 18 7 0 13 21 17 35 2 0 29 1 0 66 8 0 7 25 32 21 3 0 6 1 0 75 9 4 8 0 4 9 2 0 20 1 0 71 1 0 16 2 0 19 2 1 4 1 0 172 1 0 25 1 0 5 2 1 68 9 10 46 15 12 59 27 30 21 6 2 13 1 0 39 0 2 13 1674 2667 11 4 6 222 chain 26522 chr7 159138663 + 20057400 20057706 AluSg7 307 - 1 307 97963 306 chain 110232 chr7 159138663 + 20062995 20064390 L1PA7 6471 - 1745 3137 34084 51 0 4 207 4 0 196 0 1 9 0 1 164 31 27 108 2 0 86 21 19 300 0 4 24 1 0 191 chain 144207 chr7 159138663 + 20064390 20066125 L1PA7 6471 + 4733 6469 25439 184 0 1 30 2 1 115 1 2 555 1 0 159 0 1 688 chain 17308 chr7 159138663 + 20067741 20068096 MSTA 426 + 0 399 134764 100 24 48 56 4 0 12 37 41 10 1 0 29 28 49 54 chain 31465 chr7 159138663 + 20079109 20079494 MER41A 554 - 167 554 81705 363 0 2 22 chain 58736 chr7 159138663 + 20090538 20091296 MER4E 760 + 0 747 53564 18 1 3 147 1 0 173 1 0 40 0 4 91 1 0 55 11 0 79 1 0 113 2 0 24 chain 233781 chr7 159138663 + 20094077 20097737 L1PB2 3958 + 474 3823 17100 145 0 1 104 343 0 215 1 5 249 0 1 144 0 5 34 1 0 94 5 8 106 4 1 177 0 1 32 10 4 490 3 2 26 0 6 111 2 4 42 4 0 16 0 4 189 31 0 27 0 1 48 0 4 128 34 33 66 0 1 140 1 0 71 0 5 16 1 6 73 4 46 8 1 0 11 5 0 66 34 49 56 1 0 72 1 0 7 9 10 47 1 0 32 0 1 24 29 17 20 1 0 48 chain 28841 chr7 159138663 + 20094345 20094662 AluYb8 318 + 0 316 89717 132 1 0 184 chain 504406 chr7 159138663 + 20107432 20113562 L1PA3long 6157 + 11 6149 6576 99 30 16 68 3 4 103 11 21 243 8 9 136 0 7 264 0 1 63 0 1 788 1 0 492 1 0 11 0 1 154 0 13 184 15 0 582 0 2 730 0 2 2144 chain 41417 chr7 159138663 + 20132178 20132666 L1PA5 6144 + 5648 6135 67397 338 7 0 9 0 6 134 chain 47113 chr7 159138663 + 20132691 20133286 L1PA10 4194 + 3572 4161 61118 503 3 1 40 3 0 34 1 0 11 chain 99655 chr7 159138663 + 20140580 20141723 L1PA4 6152 + 5007 6152 36865 287 1 0 524 2 1 277 0 4 52 chain 32635 chr7 159138663 + 20160331 20160776 LTR7 482 + 0 470 79788 100 21 15 51 1 0 85 1 33 186 chain 287420 chr7 159138663 + 20160791 20164463 HERVH-int 3825 + 0 3824 14193 26 0 1 289 17 16 32 1 2 107 10 12 47 1 0 9 1 0 1 0 171 12 22 1 30 0 1 22 1 0 123 0 1 268 5 9 95 1 0 156 30 20 4 1 0 15 1 0 102 5 0 434 0 4 76 18 23 13 1 0 179 0 1 356 0 1 503 3 17 89 12 1 139 19 20 396 chain 28752 chr7 159138663 + 20165722 20166173 LTR7 482 + 0 477 90106 86 53 0 15 15 14 17 0 51 47 0 31 52 2 0 164 chain 3886 chr7 159138663 + 20171378 20171426 MER44B 551 + 75 122 209086 42 1 0 5 chain 4056 chr7 159138663 + 20171613 20171660 MER44D 709 - 660 707 206545 47 chain 23873 chr7 159138663 + 20183015 20183311 AluSc5 308 - 15 308 111068 36 1 0 131 2 0 126 chain 36286 chr7 159138663 + 20221577 20221975 L1PA4 6152 + 5754 6152 74521 398 chain 104024 chr7 159138663 + 20305391 20306954 L1PA8 5853 - 0 1282 35729 93 1 0 19 2 1 52 11 9 69 2 0 48 1 0 478 7 9 61 5 3 6 1 0 122 1 0 134 272 0 178 chain 61977 chr7 159138663 + 20428264 20428999 L1PA7 6471 - 4 749 51908 259 2 0 178 11 23 285 chain 39078 chr7 159138663 + 20455837 20456320 MER9a3 513 - 4 513 70635 74 0 1 17 0 2 78 0 21 301 0 2 13 chain 9587 chr7 159138663 + 20462801 20462940 MER2 342 - 20 160 162654 23 7 8 109 chain 51514 chr7 159138663 + 20467392 20468383 L1PA15 4387 + 3362 4353 57956 128 10 17 25 0 2 51 0 50 21 0 6 41 16 6 104 14 12 65 2 0 17 1 0 25 1 0 58 75 58 56 1 0 21 50 36 24 1 0 11 6 0 8 0 2 10 2 1 39 17 14 44 3 1 11 13 7 20 chain 13233 chr7 159138663 + 20482031 20482243 LTR1C 686 + 38 268 147347 32 0 1 30 14 12 82 13 28 28 0 4 13 chain 44989 chr7 159138663 + 20495249 20495774 L1PA7 6471 - 20 548 63066 135 0 1 35 0 2 355 chain 15787 chr7 159138663 + 20501145 20501394 AluSp 311 + 58 305 138989 58 29 30 5 3 0 80 0 1 41 1 0 32 chain 18564 chr7 159138663 + 20530243 20530509 MSTA-int 1630 + 1351 1623 131323 85 1 0 4 0 1 27 12 20 26 1 0 23 1 0 86 chain 9329 chr7 159138663 + 20549101 20549230 MER85 139 - 0 135 163903 30 7 13 92 chain 62342 chr7 159138663 + 20555781 20556521 L1PA6 6164 + 5404 6154 51739 296 1 0 7 0 4 90 3 0 201 7 9 45 0 8 90 chain 51428 chr7 159138663 + 20562366 20563108 L1PA13 3608 + 2756 3486 58020 376 1 0 28 5 4 110 9 7 55 1 0 17 0 1 37 8 5 47 2 0 5 2 0 8 15 14 16 chain 155747 chr7 159138663 + 20576740 20578772 L1PA3long 6157 + 4442 6157 23885 189 317 0 1526 chain 65458 chr7 159138663 + 20579295 20580148 L1PA10 4194 + 3287 4150 50353 23 5 11 384 1 4 190 0 3 95 14 15 104 3 0 34 chain 190079 chr7 159138663 + 20586744 20589101 HERVH-int 3825 + 10 3825 20039 55 1 1224 143 23 9 29 1 0 215 6 33 282 0 4 88 4 9 202 0 1 555 1 0 211 9 11 39 0 210 270 0 2 223 chain 28964 chr7 159138663 + 20590910 20591316 LTR7 482 + 0 476 89159 69 8 46 85 10 0 11 11 53 212 chain 107506 chr7 159138663 + 20594518 20595734 L1PA4 6152 + 4921 6143 34842 379 0 5 673 0 1 164 chain 424341 chr7 159138663 + 20607184 20612091 L1PA5 6144 + 1204 6128 9439 164 1 15 855 0 1 75 0 1 122 5 1 67 1 0 598 3 10 172 1 0 390 2 0 255 1 2 34 0 1 661 1 0 325 0 1 1174 chain 50643 chr7 159138663 + 20623476 20624381 LTR12_ 688 - 7 688 58544 143 0 1 172 208 0 78 3 4 12 17 23 52 24 0 196 chain 9004 chr7 159138663 + 20623791 20623894 LTR12_ 688 - 220 323 142848 103 chain 2633 chr7 159138663 + 20623894 20623923 LTR12_ 688 - 220 249 200335 29 chain 7889 chr7 159138663 + 20628963 20629141 LTR12F 595 - 312 447 171740 45 45 3 20 14 5 25 0 8 29 chain 21222 chr7 159138663 + 20631636 20631912 AluSp 311 + 15 289 123128 30 6 5 213 1 0 26 chain 72408 chr7 159138663 + 20643910 20644718 L1PA5 6144 - 6 824 47301 207 0 10 601 chain 120056 chr7 159138663 + 20644736 20646096 L1PA5 6144 + 4779 6139 31038 1360 chain 22666 chr7 159138663 + 20651807 20652178 THE1D 372 - 0 369 117243 126 2 8 18 11 14 12 6 7 47 1 5 30 0 1 29 19 0 60 0 2 10 chain 35689 chr7 159138663 + 20667633 20668075 L1PA6 6164 - 5 443 75286 7 6 0 138 5 0 6 1 6 264 0 2 15 chain 49249 chr7 159138663 + 20672103 20672643 L1PA3long 6157 + 5616 6156 59555 540 chain 12398 chr7 159138663 + 20673670 20673859 L1PB4 2604 - 34 218 150647 18 1 0 60 0 4 63 9 0 12 1 2 25 chain 3086 chr7 159138663 + 20686969 20687006 U2 167 + 0 39 223160 31 0 2 6 chain 12211 chr7 159138663 + 20691374 20691575 MER30 238 + 0 238 151379 15 13 31 61 17 36 95 chain 174864 chr7 159138663 + 20707376 20709365 SVA_E 1901 + 4 1901 21482 149 2 0 105 0 1 67 3 0 491 1 0 19 4 0 91 4 0 48 78 0 286 1 0 204 1 0 296 0 1 139 chain 7100 chr7 159138663 + 20708360 20708438 SVA_E 1901 + 1024 1101 130277 71 1 0 6 chain 59087 chr7 159138663 + 20728042 20728734 L1PA5 6144 + 5434 6128 53340 441 1 3 94 22 22 134 chain 28641 chr7 159138663 + 20760286 20760593 AluYg6 310 + 0 307 90558 307 chain 14032 chr7 159138663 + 20784239 20784395 L1PA4 6152 + 5995 6151 144449 156 chain 20371 chr7 159138663 + 20785725 20786019 AluSp 311 - 13 310 125990 20 0 2 30 27 29 89 2 0 71 1 2 54 chain 36070 chr7 159138663 + 20800153 20800728 MER1A 529 + 0 529 74803 80 49 13 26 34 28 278 3 0 26 11 10 68 chain 46095 chr7 159138663 + 20857429 20858029 LTR71B 605 + 0 605 61947 126 11 21 6 6 0 124 0 1 327 chain 4954 chr7 159138663 + 20858634 20858691 HY3 101 - 1 58 195653 57 chain 23442 chr7 159138663 + 20859773 20860080 AluSp 311 + 1 304 113418 67 10 8 44 2 0 184 chain 112158 chr7 159138663 + 20860918 20862227 L1PA6 6164 - 2 1332 33622 126 3 20 692 0 9 7 11 5 149 0 1 321 chain 24787 chr7 159138663 + 20888027 20888316 AluSp 311 - 22 311 105958 289 chain 26546 chr7 159138663 + 20899334 20899636 AluY 311 + 3 306 97855 123 0 1 179 chain 409677 chr7 159138663 + 20923055 20927792 L1PA6 6164 - 8 4758 9811 840 0 1 4 0 3 121 0 1 820 0 4 1171 0 1 863 0 2 401 1 0 249 0 1 219 0 3 6 2 0 40 chain 9414 chr7 159138663 + 20931896 20932048 MER3 215 + 63 211 163487 12 1 0 76 17 0 16 0 14 30 chain 240382 chr7 159138663 + 20963406 20966536 L1PA10 4194 - 33 3159 16750 11 1 0 7 0 1 26 3 0 9 2 1 306 9 6 6 0 3 274 0 1 152 0 1 297 0 1 8 1 0 173 0 1 202 0 4 15 4 0 558 1 0 250 9 8 4 0 1 14 2 1 288 7 6 491 chain 65292 chr7 159138663 + 20966536 20967335 L1PA7 6471 + 5666 6470 50355 34 0 2 605 3 4 16 0 1 124 5 6 12 chain 220508 chr7 159138663 + 20985801 20989191 L1PB3 3668 + 206 3542 17847 31 3 0 76 19 15 221 1 0 4 0 1 87 0 1 13 14 17 53 5 6 115 0 2 86 1 0 6 5 6 22 3 0 6 13 14 216 2 0 6 27 25 260 4 5 133 14 13 44 10 12 57 10 11 174 0 1 155 14 6 104 9 2 58 1 0 71 1 4 103 0 4 45 0 2 58 14 6 20 1 0 9 0 5 70 1 0 167 2 0 7 35 39 107 2 0 20 4 0 61 1 0 14 0 2 28 26 0 21 11 24 50 5 6 35 8 5 38 1 0 97 6 5 85 20 4 18 1 0 4 1 0 24 3 1 13 chain 4612 chr7 159138663 + 21032710 21032766 L1PA16 3655 + 2823 2879 199493 56 chain 328985 chr7 159138663 + 21074732 21079093 L1PB1 5432 - 371 4720 12235 292 2 0 64 0 2 77 3 0 76 1 0 4 0 1 53 2 1 294 0 1 191 0 6 43 1 0 234 10 1 187 0 4 133 0 1 185 1 0 369 1 0 44 15 19 46 22 23 85 5 0 6 15 20 56 0 3 34 1 6 8 12 0 108 5 7 139 5 4 108 3 10 513 0 1 153 6 1 24 5 16 5 2 0 166 18 6 391 0 1 73 0 4 10 15 0 40 chain 28854 chr7 159138663 + 21083590 21083897 AluYb8 318 + 0 306 89654 132 1 0 174 chain 2947 chr7 159138663 + 21086261 21086292 U2 167 + 0 31 226111 31 chain 73395 chr7 159138663 + 21129867 21130689 L1PA4 6152 + 5318 6140 46837 822 chain 27568 chr7 159138663 + 21141081 21141448 MSTA-int 1630 + 1248 1612 94444 89 1 0 150 4 1 26 1 0 14 0 2 82 chain 17207 chr7 159138663 + 21169559 21169920 THE1D 372 - 0 365 135017 126 70 77 39 6 7 45 6 10 23 26 17 12 0 1 8 chain 160474 chr7 159138663 + 21185860 21187987 L1P3 4156 + 0 2161 23273 147 4 1 87 23 30 55 1 0 83 9 6 61 1 0 104 10 7 11 6 5 139 13 18 214 7 24 258 0 19 673 1 0 90 1 0 129 chain 16245 chr7 159138663 + 21213858 21214036 AluYc 301 + 116 294 137633 178 chain 501197 chr7 159138663 + 21216266 21221884 L1PA4 6152 - 1 6146 6775 692 2 0 86 0 1 90 0 4 649 1 0 814 1 0 2051 0 1 153 2 1 540 0 1 445 0 525 92 chain 7499 chr7 159138663 + 21247841 21247985 THE1D 372 - 210 360 174166 17 0 8 49 39 37 39 chain 17670 chr7 159138663 + 21269982 21270333 L1PB1 5432 + 5105 5420 133774 9 3 0 20 1 0 12 1 0 10 2 0 3 2 0 8 2 0 53 2 1 10 6 4 40 7 6 10 19 6 30 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3698 chr7 159138663 + 21271483 21271539 L1MA8 2339 + 2124 2177 211958 37 4 1 15 chain 350171 chr7 159138663 + 21271677 21275628 L1PA5 6144 - 13 3985 11600 1069 0 14 231 0 1 456 10 16 51 0 1 789 0 1 344 1 0 279 1 0 720 chain 2530 chr7 159138663 + 21286222 21286276 SVA_F 1814 - 970 1297 232746 26 1 234 13 1 41 13 chain 9205 chr7 159138663 + 21291682 21291801 MER125 140 - 7 126 164535 119 chain 9864 chr7 159138663 + 21325777 21326183 L1MB7 1623 + 1251 1598 161265 12 25 21 4 1 0 4 1 0 11 3 0 20 1 0 13 34 30 56 1 0 7 30 12 10 4 1 27 104 81 38 chain 7676 chr7 159138663 + 21330411 21330498 BC200 147 + 42 129 173070 87 chain 9568 chr7 159138663 + 21350994 21351149 MER30 238 - 0 171 162746 97 5 30 13 17 8 23 chain 5768 chr7 159138663 + 21353022 21353125 MER8 282 - 22 272 187450 17 10 8 32 5 154 39 chain 3566 chr7 159138663 + 21367782 21367881 MER51A 677 - 354 474 214211 34 34 59 6 4 0 21 chain 5285 chr7 159138663 + 21369367 21369520 MER52D 1964 - 727 814 192165 17 80 13 11 0 1 45 chain 2872 chr7 159138663 + 21369406 21369440 MER52D 1964 - 757 791 227511 34 chain 503522 chr7 159138663 + 21378977 21385131 L1PA7 6471 - 10 6206 6635 28 18 19 89 5 4 618 2 3 84 1 0 942 0 8 302 1 0 50 0 2 223 3 0 432 6 1 35 4 1 298 0 1 428 0 4 255 1 2 366 0 69 252 1 0 122 0 1 206 1 2 257 0 1 657 21 0 131 0 1 158 14 0 36 2 3 105 chain 10757 chr7 159138663 + 21385184 21385317 L1P3 4156 + 540 673 157170 133 chain 2556 chr7 159138663 + 21387883 21387910 MER21C 908 + 861 888 232406 27 chain 19967 chr7 159138663 + 21388770 21389100 THE1D 372 + 0 368 127247 15 0 2 34 9 0 23 24 68 38 14 15 173 chain 35046 chr7 159138663 + 21412567 21413026 LTR2 463 - 0 463 76120 88 24 25 292 0 3 55 chain 3437 chr7 159138663 + 21424961 21425041 LTR83 644 - 311 396 216450 26 27 32 27 chain 9741 chr7 159138663 + 21449124 21449226 AluYb8 318 + 212 314 161887 102 chain 11523 chr7 159138663 + 21455857 21456017 MER6A 605 - 0 170 154203 54 9 17 86 0 2 11 chain 110518 chr7 159138663 + 21499763 21501417 LTR12C 1709 - 0 1709 34071 38 1 0 36 25 23 137 4 4 242 12 5 17 24 0 51 0 47 46 41 0 133 1 0 16 1 5 55 0 118 265 16 0 3 20 0 7 3 0 182 9 1 194 51 60 24 chain 2194 chr7 159138663 + 21500396 21500437 LTR12C 1709 - 806 847 157859 41 chain 2136 chr7 159138663 + 21527377 21527429 HAL1-2a_MD 234 - 160 224 237314 14 1 7 17 1 10 7 3 0 9 chain 6868 chr7 159138663 + 21537837 21537959 MER2 342 + 143 278 178440 15 12 29 61 6 2 28 chain 11910 chr7 159138663 + 21538211 21538834 Tigger2 2703 - 0 334 152559 18 46 39 59 8 14 35 343 49 76 26 32 12 chain 10169 chr7 159138663 + 21547853 21548007 LTR71A 459 - 0 155 159759 13 10 8 30 7 10 94 chain 19491 chr7 159138663 + 21549433 21549801 THE1B 368 - 0 368 128682 39 1 2 34 1 0 100 102 103 43 0 1 33 2 0 13 chain 323176 chr7 159138663 + 21570974 21577938 L1PA11 4918 - 351 4915 12472 13 2 1 14 13 9 10 8 3 9 4 0 20 1 0 12 3 1 56 14 12 13 2 1 61 0 1 262 0 1 8 18 11 12 0 1 81 4 0 65 15 19 135 23 8 61 0 1 4 8 6 55 9 9 782 0 1 29 0 1 16 0 1 294 9 53 148 3 7 19 9 1 7 0 1 18 1 0 184 0 2 101 3 0 56 327 0 56 3 0 257 0 2 442 0 4 74 0 1 292 11 23 29 1 4 113 1846 81 35 2 1 181 316 0 59 1 0 4 10 0 33 1 0 52 2 0 16 10 17 11 1 0 6 2 0 36 2 0 39 chain 107248 chr7 159138663 + 21575274 21576716 LTR12C 1709 - 0 1709 34900 82 1 0 399 44 13 82 0 47 106 1 79 26 0 2 6 0 118 276 5 6 6 3 0 59 21 64 43 4 17 278 chain 41746 chr7 159138663 + 21599912 21600445 MLT2A2 560 - 12 547 66968 11 6 7 86 7 8 231 1 2 102 1 0 88 chain 4283 chr7 159138663 + 21617418 21617476 L1MDa 1598 + 366 424 203440 25 0 1 6 1 0 26 chain 131845 chr7 159138663 + 21622588 21624201 L1PA7 6471 + 4843 6467 27665 135 2 1 5 0 1 126 0 1 38 5 3 152 0 5 311 0 3 21 1 0 4 0 1 48 0 2 118 0 2 5 2 0 473 1 0 4 10 11 143 0 2 9 chain 53232 chr7 159138663 + 21660193 21660779 L1PA3long 6157 - 9 595 56872 586 chain 254682 chr7 159138663 + 21660779 21663578 L1PA3long 6157 + 3333 6142 16002 613 0 1 12 0 3 834 0 2 512 0 4 828 chain 5686 chr7 159138663 + 21718440 21718583 L1MA9 1812 + 1580 1691 188235 36 2 0 45 46 16 14 chain 63523 chr7 159138663 + 21733813 21734594 L1PA8 5853 - 0 774 51146 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 46 1 0 483 chain 81968 chr7 159138663 + 21734594 21735586 L1PA8 5853 + 4077 5079 42774 574 4 6 155 0 1 174 9 15 4 0 1 72 chain 23931 chr7 159138663 + 21737961 21738475 L1PB1 5432 - 6 496 110744 25 1 0 8 1 0 24 1 0 16 25 27 18 42 29 43 1 0 15 2 1 32 0 1 17 4 2 9 2 0 3 2 0 12 8 6 23 5 0 8 1 4 20 25 26 121 chain 41625 chr7 159138663 + 21740190 21740716 L1PA7 6471 + 5923 6450 67125 287 2 1 5 0 1 90 1 2 141 chain 5904 chr7 159138663 + 21808551 21808614 L1PA3long 6157 + 6087 6150 186153 63 chain 22979 chr7 159138663 + 21853983 21854244 L1PA2 6032 - 0 262 115724 13 0 1 248 chain 24368 chr7 159138663 + 21871765 21872058 L1P2 5180 - 2994 3300 108273 122 2 3 81 1 13 87 chain 12422 chr7 159138663 + 21872058 21872193 L1P3 4156 - 1528 1663 150183 135 chain 2889 chr7 159138663 + 21897906 21897938 L1ME1 1623 + 1233 1265 227208 32 chain 40163 chr7 159138663 + 21905283 21905806 MER41A 554 - 8 554 69090 32 0 1 38 1 6 29 0 5 4 0 1 165 0 1 12 1 2 90 0 9 151 chain 459065 chr7 159138663 + 21967425 21973430 L1PA7 6471 + 791 6470 8442 58 8 9 54 0 1 50 1 0 23 4 5 111 2 1 13 1 0 20 0 16 6 0 2 24 4 0 311 0 3 261 1 0 9 1 0 373 1 2 470 4 5 14 16 0 257 0 4 224 0 1 154 3 5 120 321 0 106 1 0 41 0 4 18 0 4 206 0 2 55 6 7 597 48 16 121 1 0 4 0 1 90 0 8 99 0 1 847 10 6 15 1 0 4 0 1 6 1 6 288 0 1 233 9 6 122 1 2 156 chain 11479 chr7 159138663 + 21997414 21997573 MSTA 426 - 227 426 154378 38 0 20 8 5 25 108 chain 26215 chr7 159138663 + 21997988 21998284 AluYk4 311 + 0 296 99142 296 chain 25369 chr7 159138663 + 22016701 22016989 L1PA5 6144 - 1 290 102834 146 0 1 142 chain 4689 chr7 159138663 + 22024995 22025050 L1MB2 1706 + 1636 1691 198648 55 chain 19448 chr7 159138663 + 22046434 22046675 AluSc 308 + 62 301 128827 65 2 0 174 chain 123055 chr7 159138663 + 22068116 22069668 LTR12C 1709 + 0 1709 30026 256 11 12 10 5 1 59 0 43 137 1 2 130 0 119 68 1 0 107 1 7 161 9 6 106 11 4 224 12 14 243 chain 114289 chr7 159138663 + 22071105 22072505 LTR12C 1709 - 0 1709 32997 84 1 0 67 1 0 54 0 2 274 11 4 106 9 6 105 2 0 13 0 278 335 0 43 338 chain 27204 chr7 159138663 + 22098728 22099078 THE1C 375 - 19 375 95578 6 1 0 5 0 3 138 0 3 13 8 9 179 chain 24673 chr7 159138663 + 22103000 22103364 THE1D 372 + 0 363 106597 77 3 2 83 0 1 17 16 14 12 17 18 139 chain 118234 chr7 159138663 + 22124973 22126518 THE1C-int 1605 - 0 1605 31717 435 29 27 438 1 2 96 1 2 153 0 7 238 0 54 138 2 1 14 chain 22224 chr7 159138663 + 22129391 22129777 MER41C 542 - 12 419 119245 156 16 18 14 12 33 19 9 7 77 47 47 36 chain 9960 chr7 159138663 + 22130533 22130651 LTR12C 1709 + 950 1068 160779 118 chain 42746 chr7 159138663 + 22136159 22136788 LTR9B 643 + 0 643 65726 200 11 10 212 50 57 21 7 0 10 0 10 43 0 6 34 2 1 39 chain 25673 chr7 159138663 + 22140894 22141252 L1PA8 5853 + 5502 5853 101396 62 1 0 47 2 0 71 8 6 52 2 1 19 1 0 93 chain 23864 chr7 159138663 + 22152156 22152471 AluSx4 309 + 1 299 111111 86 17 0 212 chain 12814 chr7 159138663 + 22257591 22257738 L1PA4 6152 - 0 152 149001 6 0 5 141 chain 21722 chr7 159138663 + 22282289 22282584 AluSp 311 + 1 300 121308 146 8 27 15 15 0 111 chain 26367 chr7 159138663 + 22297966 22298271 AluSp 311 + 9 310 98543 141 4 0 160 chain 3889 chr7 159138663 + 22325728 22325770 tRNA-Arg-CGY_ 50 + 4 46 209048 42 chain 20934 chr7 159138663 + 22328131 22328367 AluYk4 311 - 2 238 124167 236 chain 59816 chr7 159138663 + 22346009 22346932 L1MA1 4479 - 290 1203 52923 18 7 0 8 3 1 11 1 4 5 1 0 35 2 0 29 1 0 34 0 1 9 10 9 73 3 0 5 1 0 28 0 8 18 6 11 22 2 1 6 0 1 6 2 0 20 1 0 84 4 3 25 2 1 195 2 0 130 3 0 37 0 1 74 chain 9559 chr7 159138663 + 22378864 22378979 MER50 708 + 575 690 162783 115 chain 21435 chr7 159138663 + 22380684 22381024 THE1B 368 - 0 368 122388 80 1 4 41 29 42 5 3 0 28 1 0 56 9 10 47 0 15 40 chain 118609 chr7 159138663 + 22381024 22382628 THE1B-int 1605 - 0 1605 31578 8 0 2 236 0 1 126 15 16 35 4 5 131 15 5 105 0 13 191 1 0 109 33 2 163 0 25 145 0 1 252 10 9 25 chain 19680 chr7 159138663 + 22382628 22382948 THE1B 368 - 0 345 128165 86 0 1 28 47 57 28 1 0 104 5 20 21 chain 3523 chr7 159138663 + 22434724 22434799 LOR1a 498 + 400 484 215012 27 3 11 15 11 12 19 chain 94501 chr7 159138663 + 22489135 22490513 L1MA2 4263 - 216 1585 38208 9 0 4 43 1 0 25 1 0 9 2 1 15 13 11 124 12 9 135 1 0 30 3 6 38 9 8 13 1 0 33 1 2 60 1 6 7 0 4 91 44 0 64 7 8 265 1 26 28 5 0 25 0 3 31 0 5 231 chain 77368 chr7 159138663 + 22501853 22502704 L1PA3long 6157 - 1 852 44753 851 chain 91803 chr7 159138663 + 22502704 22503710 L1PA3long 6157 + 4275 5281 39027 1006 chain 17987 chr7 159138663 + 22507087 22507449 THE1B 368 + 0 368 132898 109 129 134 67 0 1 57 chain 3588 chr7 159138663 + 22507686 22507731 MER53 195 - 132 176 205290 23 1 0 21 chain 4873 chr7 159138663 + 22507731 22507865 MER53 195 + 41 186 196561 23 52 54 13 1 10 45 chain 2319 chr7 159138663 + 22512668 22512692 LTR16D1 520 - 71 95 235139 24 chain 546694 chr7 159138663 + 22567917 22573947 L1PA3long 6157 + 0 6157 1863 152 0 1 97 5 6 520 0 128 5248 3 0 5 chain 8143 chr7 159138663 + 22583421 22583650 L1PB1 5432 + 5168 5422 170273 19 0 1 13 6 35 17 7 8 21 1 0 11 27 16 16 12 22 11 0 8 9 9 0 18 1 0 11 1 0 14 1 0 4 chain 29196 chr7 159138663 + 22622254 22622744 LTR45 522 - 41 512 88066 6 1 0 111 10 11 13 2 0 20 0 5 91 1 2 15 65 45 82 2 0 31 1 0 39 chain 11527 chr7 159138663 + 22636674 22636860 MER58B 340 - 16 204 154192 34 7 8 11 17 18 117 chain 29964 chr7 159138663 + 22742976 22743384 LTR7 482 + 0 482 84923 54 23 61 109 0 1 8 0 31 43 0 2 80 0 2 91 chain 294488 chr7 159138663 + 22743428 22747275 HERVH-int 3825 + 21 3824 13733 259 0 2 51 1 0 27 8 10 100 0 60 40 1 0 10 1 0 24 2 52 24 22 1 17 33 32 49 1 0 308 0 1 293 0 1 41 0 1 46 1 0 215 4 31 370 8 13 875 185 20 21 1 0 443 0 1 250 1 0 115 chain 31171 chr7 159138663 + 22748522 22748932 LTR7 482 + 0 482 82219 69 8 46 109 0 1 8 0 31 43 0 2 173 chain 272890 chr7 159138663 + 22777107 22780935 L1MA1 4479 + 256 4136 15023 21 3 1 71 17 5 64 0 2 210 0 99 30 0 6 22 4 0 28 0 2 309 0 4 109 9 17 62 0 1 284 0 3 67 8 7 166 0 9 174 12 17 41 0 7 24 8 9 40 1 3 4 0 1 4 0 1 329 1 2 5 1 0 135 0 1 14 12 0 105 2 0 27 17 16 49 1 0 94 8 7 21 2 0 94 20 5 73 5 0 18 4 0 76 1 0 12 6 0 48 5 0 78 3 0 119 5 0 5 1 0 200 2 1 25 2 0 16 1 0 7 1 0 64 2 1 19 2 0 6 3 1 6 1 0 68 1 0 6 0 1 13 1 0 5 2 0 126 1 0 29 2 0 29 chain 113677 chr7 159138663 + 22793301 22794637 L1P3 4156 - 17 1345 33180 24 2 1 7 2 0 109 6 2 190 1 0 312 1 0 626 0 1 56 chain 38407 chr7 159138663 + 22801692 22802198 MER75 514 - 1 506 71566 5 1 0 189 10 10 301 chain 19459 chr7 159138663 + 22808244 22808596 THE1D 372 + 0 360 128792 55 3 8 47 22 22 36 54 57 115 1 0 11 0 1 8 chain 2847 chr7 159138663 + 22826794 22826824 MER45A 178 + 71 101 227914 30 chain 6709 chr7 159138663 + 22828107 22828243 MLT1B 390 + 35 173 179614 59 44 46 33 chain 16481 chr7 159138663 + 22828632 22828832 MER4E 760 - 0 200 136980 200 chain 119051 chr7 159138663 + 22834983 22836900 THE1B-int 1605 - 0 1605 31388 197 6 7 427 29 27 63 340 0 169 10 11 63 10 11 163 0 2 8 0 25 432 chain 13417 chr7 159138663 + 22836912 22837081 THE1B 368 - 12 182 146645 62 1 0 100 0 2 6 chain 143757 chr7 159138663 + 22839828 22841481 SVA_D 2077 + 8 2077 25523 17 5 0 28 6 0 489 0 80 274 16 158 6 0 1 42 1 206 73 0 8 11 8 0 39 1 0 637 chain 13827 chr7 159138663 + 22843288 22843659 MER61-int 3695 + 1 326 145157 13 0 1 13 14 2 14 2 1 5 1 0 16 3 4 126 133 99 31 chain 26106 chr7 159138663 + 22863901 22864613 LTR8 732 - 271 716 99592 71 2 4 151 306 24 49 24 28 89 4 13 16 chain 33139 chr7 159138663 + 22867214 22867650 MER66A 478 + 0 436 79002 66 1 0 122 0 1 9 1 0 21 4 5 212 chain 15945 chr7 159138663 + 22956201 22956382 HERVH-int 3825 + 3644 3825 138537 181 chain 553145 chr7 159138663 + 22963815 22969971 L1PA4 6152 + 0 6152 1051 2806 1 2 369 2 0 1452 4 0 611 1 0 303 0 1 588 1 0 12 0 2 6 chain 5551 chr7 159138663 + 23005116 23005183 L1PA8 5853 + 5786 5853 189552 67 chain 20941 chr7 159138663 + 23065517 23065744 AluY 311 + 82 309 124146 227 chain 9676 chr7 159138663 + 23073776 23073899 L1P1 4361 + 4209 4328 162210 89 3 0 7 1 0 23 chain 556474 chr7 159138663 + 23075353 23082351 L1PA2 6032 + 7 6030 675 4115 974 0 1134 1 0 774 chain 76283 chr7 159138663 + 23079474 23080442 LTR5_Hs 974 + 0 974 45320 289 0 1 177 0 1 188 1 0 163 8 15 16 23 21 103 chain 34623 chr7 159138663 + 23082351 23082734 L1PA5 6144 + 5761 6144 76722 383 chain 167951 chr7 159138663 + 23084927 23087035 SVA_D 2077 - 13 2066 22289 663 4 0 13 76 0 175 101 0 161 0 51 19 0 38 27 2 1 20 0 40 537 3 1 253 5 7 10 12 10 27 chain 2587 chr7 159138663 + 23085607 23085637 SVA_D 2077 - 918 948 89118 30 chain 3371 chr7 159138663 + 23085637 23085683 SVA_D 2077 - 694 738 83032 36 2 0 8 chain 5935 chr7 159138663 + 23085859 23085940 SVA_D 2077 - 991 1123 83032 34 0 51 47 chain 60100 chr7 159138663 + 23097156 23097913 MER4E 760 + 0 760 52770 17 0 1 148 7 0 203 0 2 59 0 5 11 2 1 154 2 3 134 0 2 20 chain 186462 chr7 159138663 + 23172088 23175162 L1MA1 4479 - 289 3029 20384 18 9 1 15 14 18 31 3 1 28 1 0 123 15 11 14 1 0 18 2 5 61 2 0 20 1 0 71 1 0 16 2 0 24 1 0 62 0 1 139 2 0 123 5 2 91 0 2 25 328 4 15 1 0 94 2 0 172 2 0 27 1 0 92 5 4 48 15 14 13 0 1 15 3 1 37 2 1 62 1 0 57 2 0 16 2 0 76 13 12 84 0 1 58 11 12 44 4 8 28 6 0 84 0 4 49 1 0 53 0 1 9 0 4 24 0 8 74 15 17 26 0 1 39 24 25 339 0 4 63 chain 21238 chr7 159138663 + 23177805 23178106 AluSg7 307 + 5 306 123063 126 0 1 54 32 31 89 chain 4925 chr7 159138663 + 23181874 23181932 MLT1D 503 + 445 503 195984 58 chain 5424 chr7 159138663 + 23191068 23191184 MER5A1 166 - 1 118 190768 13 29 32 7 1 0 30 1 0 35 chain 9190 chr7 159138663 + 23228168 23228348 MER53 195 - 4 191 164605 52 44 52 12 3 2 69 chain 109306 chr7 159138663 + 23232473 23233909 LTR12C 1709 - 0 1709 34368 84 6 5 64 1 0 328 11 4 106 1 158 46 0 2 45 0 118 224 1 0 12 8 5 5 0 3 32 5 4 106 1 2 43 10 16 297 chain 17281 chr7 159138663 + 23244234 23244586 THE1C 375 + 0 375 134830 30 1 0 17 0 6 17 21 22 13 30 34 28 0 4 8 0 2 5 24 22 51 1 0 76 4 14 26 chain 28248 chr7 159138663 + 23283286 23283593 AluYf5 307 + 0 307 92123 307 chain 2687 chr7 159138663 + 23295832 23295883 L1MA4 2864 - 63 112 230370 26 10 8 15 chain 37440 chr7 159138663 + 23300949 23301409 L1PA6 6164 + 5704 6162 72906 311 2 5 6 3 0 127 2 0 9 chain 23417 chr7 159138663 + 23321237 23321600 Tigger3b 1229 + 54 717 113558 46 0 173 21 1 0 5 1 0 9 7 0 6 21 1 13 4 0 217 0 160 12 chain 4831 chr7 159138663 + 23331106 23331193 MER30 238 + 125 210 197006 13 2 0 15 18 18 39 chain 24432 chr7 159138663 + 23340876 23341177 AluSp 311 - 13 311 107902 14 4 0 176 0 1 107 chain 14415 chr7 159138663 + 23342841 23343100 L1MB3 1562 - 145 412 143165 34 54 63 111 4 0 5 0 3 51 chain 3353 chr7 159138663 + 23344267 23344304 L1MB3 1562 + 1380 1417 217997 37 chain 20186 chr7 159138663 + 23356029 23356323 AluSz 310 + 11 309 126572 68 8 11 37 12 19 6 3 0 150 3 0 7 chain 541414 chr7 159138663 + 23360679 23366682 L1PA3long 6157 + 0 6143 2602 153 1 2 621 0 128 166 1 0 83 9 12 1085 0 2 2559 5 0 235 0 12 1085 chain 5933 chr7 159138663 + 23381303 23381370 L1PA8 5853 + 5778 5845 185849 67 chain 10595 chr7 159138663 + 23411998 23412234 L1PB1 5432 - 40 254 157846 22 1 0 24 71 54 11 1 0 44 1 0 16 2 1 8 1 0 34 chain 18704 chr7 159138663 + 23414354 23414597 MER11B 1079 - 0 1079 130932 11 5 4 138 0 837 89 chain 110312 chr7 159138663 + 23437648 23438900 L1PA3long 6157 - 113 1371 34121 35 1 3 696 1 5 519 chain 6004 chr7 159138663 + 23438900 23438967 L1PA3long 6157 + 6035 6102 185212 67 chain 4767 chr7 159138663 + 23438967 23439018 L1PA3long 6157 + 6106 6157 197739 51 chain 15489 chr7 159138663 + 23445152 23445755 MER1B 344 + 52 338 139927 18 10 0 11 9 20 31 9 6 82 4 0 29 1 0 12 1 0 5 331 22 50 chain 45593 chr7 159138663 + 23445970 23446572 LTR12_ 688 - 0 688 62412 157 0 103 261 42 0 21 3 28 118 chain 22157 chr7 159138663 + 23476828 23477107 AluSq10 312 + 10 288 119565 101 2 1 176 chain 22765 chr7 159138663 + 23478889 23479196 AluYf4 310 + 0 303 116758 78 3 1 30 2 4 13 7 0 76 3 6 95 chain 4564 chr7 159138663 + 23490278 23490340 U7 62 + 2 61 200056 34 3 0 25 chain 8695 chr7 159138663 + 23531414 23531512 HY3 101 - 3 101 167220 98 chain 40275 chr7 159138663 + 23553250 23554034 LTR10C 591 - 27 556 68909 29 7 12 14 0 2 141 0 1 239 263 0 91 chain 4451 chr7 159138663 + 23574401 23574455 L1MC4 1079 - 798 852 201330 54 chain 26120 chr7 159138663 + 23574523 23574826 AluSp 311 - 10 311 99526 19 2 0 282 chain 5813 chr7 159138663 + 23580061 23580127 MER21A 919 + 443 509 187018 66 chain 7197 chr7 159138663 + 23595762 23595902 L1MA6 2487 - 449 586 176079 42 5 8 18 0 1 6 12 10 18 7 2 32 chain 32008 chr7 159138663 + 23605696 23606047 L1PA4 6152 - 1 353 80851 347 0 1 4 chain 23639 chr7 159138663 + 23623492 23623777 AluSp 311 + 10 294 112358 43 1 0 241 chain 3434 chr7 159138663 + 23629956 23629993 MER2B 336 + 293 330 216500 37 chain 12219 chr7 159138663 + 23647990 23648213 MER30 238 + 0 237 151346 15 20 27 56 0 2 8 4 12 5 2 0 5 2 0 50 8 9 48 chain 257719 chr7 159138663 + 23659208 23662087 L1PA5 6144 - 6 2889 15826 837 0 4 1321 1 0 550 0 1 170 chain 24698 chr7 159138663 + 23672619 23672910 AluSp 311 - 20 311 106446 291 chain 172573 chr7 159138663 + 23675529 23678352 SVA_E 1901 + 0 1901 21753 104 0 20 29 2 0 664 575 0 106 8 4 107 359 0 861 2 0 6 chain 36837 chr7 159138663 + 23676351 23676817 SVA_F 1814 + 843 1291 73755 45 2 0 37 1 0 4 46 33 210 1 0 102 1 0 17 chain 4348 chr7 159138663 + 23676440 23676486 SVA_F 1814 + 1043 1089 142424 46 chain 1933 chr7 159138663 + 23676845 23676903 SVA_E 1901 + 933 989 81953 25 2 1 18 1 0 12 chain 4832 chr7 159138663 + 23677124 23677269 SVA_E 1901 + 1238 1382 81953 127 4 3 14 chain 2443 chr7 159138663 + 23677269 23677317 SVA_E 1901 + 1129 1177 117592 48 chain 2343 chr7 159138663 + 23677330 23677367 SVA_E 1901 + 965 1002 140964 37 chain 3558 chr7 159138663 + 23677442 23677483 SVA_E 1901 + 821 862 141026 41 chain 38061 chr7 159138663 + 23693326 23693841 LTR10G 522 + 0 522 72044 18 0 2 323 7 6 10 18 23 66 1 3 61 1 0 10 chain 40234 chr7 159138663 + 23698422 23698942 LTR10G 522 + 2 522 68973 341 7 6 99 1 3 57 1 0 14 chain 14410 chr7 159138663 + 23701912 23702185 MER1B 344 + 63 339 143180 18 11 12 63 15 22 38 4 0 48 10 12 28 11 7 19 0 1 8 chain 45057 chr7 159138663 + 23723377 23723969 PABL_B 668 - 11 623 62984 137 16 31 49 0 3 228 0 1 57 5 6 100 chain 26078 chr7 159138663 + 23728247 23728554 AluSp 311 - 4 311 99715 307 chain 9103 chr7 159138663 + 23730426 23730551 L1MB8 1703 - 117 244 165053 15 5 7 105 chain 26309 chr7 159138663 + 23731949 23732260 AluSp 311 - 1 311 98794 198 2 1 111 chain 27435 chr7 159138663 + 23733457 23733819 L1PA8 5853 - 0 355 94862 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 66 chain 99246 chr7 159138663 + 23761435 23762816 L1P2 5180 - 3767 5178 36963 118 0 1 45 0 1 154 7 10 129 0 25 36 8 0 96 13 11 272 1 0 8 1 0 122 0 1 80 72 71 68 10 22 141 chain 54680 chr7 159138663 + 23763480 23764110 LTR6A 649 - 12 649 55920 14 0 1 35 1 0 202 3 6 289 0 4 86 chain 5870 chr7 159138663 + 23765240 23765311 MSTB1 431 - 27 97 186475 4 1 0 66 chain 30728 chr7 159138663 + 23780121 23780460 L1PA4 6152 - 6 345 82988 339 chain 6892 chr7 159138663 + 23791641 23791739 L1MB3 1562 + 1458 1555 178242 67 3 2 28 chain 250350 chr7 159138663 + 23794178 23798407 L1PA8A 6298 - 8 3278 16223 68 1 9 15 0 1 12 13 12 508 0 2 170 1 4 82 15 10 82 15 0 10 0 15 170 0 4 725 8 10 162 0 4 102 7 8 233 0 1 209 4 2 33 978 0 134 0 1 50 0 4 19 1 5 23 8 9 16 26 13 34 0 4 126 0 2 5 2 0 162 chain 74837 chr7 159138663 + 23796828 23797798 LTR5_Hs 974 - 3 974 46094 60 1 0 85 13 9 34 7 7 97 3 5 17 0 1 21 10 9 164 0 4 458 chain 53240 chr7 159138663 + 23798407 23799085 L1PA8A 6298 + 2321 3012 56865 112 11 13 6 2 0 53 1 2 69 0 4 69 0 4 105 0 4 250 chain 13532 chr7 159138663 + 23801713 23801867 L1PA3long 6157 - 0 160 146237 17 0 6 137 chain 55388 chr7 159138663 + 23812674 23813336 L1PA7 6471 - 10 674 55467 162 1 2 45 6 7 448 chain 437413 chr7 159138663 + 23813400 23819909 L1PA6 6164 - 2 6160 9113 6 2 0 127 16 13 693 1 5 29 4 5 55 0 1 303 53 0 98 0 1 78 1 2 101 5 4 547 7 6 14 0 1 15 0 1 103 17 18 221 9 7 430 0 12 75 16 14 380 2 1 213 5 0 186 11 5 66 0 1 52 1 0 456 1 0 20 4 5 326 12 1 7 0 16 385 11 11 58 13 10 154 0 17 64 21 0 46 9 10 89 211 128 20 19 0 39 291 95 107 72 73 132 chain 18946 chr7 159138663 + 23825402 23825620 L1PA6 6164 + 5944 6162 130239 218 chain 325344 chr7 159138663 + 23836367 23840373 L1PA7 6471 + 2442 6467 12377 199 1 0 128 1 0 325 6 10 468 0 12 647 1 0 26 0 1 127 0 1 95 0 4 187 0 4 153 1 0 154 0 3 151 14 0 11 0 10 169 0 6 161 10 11 106 0 3 89 0 1 144 0 1 152 0 2 123 6 5 116 18 2 208 0 1 9 chain 544353 chr7 159138663 + 23862223 23868361 L1PA4 6152 - 0 6152 2164 146 1 8 1836 1 2 1352 1 2 801 0 5 266 3 0 490 0 1 154 3 0 6 2 7 1076 chain 116847 chr7 159138663 + 23872531 23874162 THE1B-int 1605 + 0 1605 32181 14 1 3 284 0 5 38 2 1 81 47 35 361 31 23 24 0 1 272 11 15 10 17 10 80 0 8 66 22 4 270 chain 504575 chr7 159138663 + 23884177 23890596 L1PA6 6164 + 4 6162 6569 135 29 30 68 0 2 143 1 0 135 0 2 48 1 0 120 0 1 164 0 2 75 4 8 874 6 0 515 7 0 30 0 2 42 0 4 136 5 8 31 0 4 215 0 4 44 303 0 418 0 6 46 0 1 1309 0 2 50 6 8 324 0 10 240 1 2 55 0 6 79 0 4 623 4 0 133 chain 47550 chr7 159138663 + 23894199 23894807 LTR12_ 688 - 0 688 60813 110 0 4 61 1 103 333 25 0 52 1 0 25 chain 394565 chr7 159138663 + 23896334 23901208 HERV9-int 5642 - 818 5637 10301 43 3 0 708 1 0 432 0 1 193 0 1 422 0 1 97 0 1 489 0 3 120 1 2 273 0 1 88 5 16 27 0 1 205 13 19 233 0 1 169 0 2 104 0 1 64 3 0 43 85 0 37 80 0 7 1 0 33 0 85 98 10 9 498 11 14 278 chain 43616 chr7 159138663 + 23901234 23901803 LTR12_ 688 - 0 688 64665 176 1 103 113 0 1 99 24 0 58 0 41 72 1 0 25 chain 4340 chr7 159138663 + 23901803 23901862 MER85 139 - 77 138 202714 9 1 0 12 0 3 37 chain 145777 chr7 159138663 + 23907663 23909486 L1PA8 5853 - 0 1825 25209 93 1 0 19 2 1 52 6 5 4 1 0 71 2 0 44 1 0 115 0 12 350 1 0 75 7 6 551 0 11 14 9 0 96 7 4 302 chain 25904 chr7 159138663 + 23909487 23909782 L1PA8 5853 + 3682 3980 100414 143 0 3 152 chain 3444 chr7 159138663 + 23914725 23914816 LTR33 499 + 409 499 216292 14 4 5 16 26 24 31 chain 81985 chr7 159138663 + 23915988 23916974 L1PA7 6471 - 6 995 42767 375 0 1 368 5 8 92 1 0 145 chain 6148 chr7 159138663 + 23934676 23934753 U13_ 108 - 30 107 183998 77 chain 33537 chr7 159138663 + 23943873 23944367 LTR12C 1709 - 0 394 78336 84 1 0 67 1 0 104 98 0 139 chain 8108 chr7 159138663 + 23944130 23944228 LTR12C 1709 - 154 251 165950 14 1 0 83 chain 23456 chr7 159138663 + 23952002 23952345 THE1C 375 + 0 375 113345 125 3 0 13 1 5 20 23 54 158 chain 110069 chr7 159138663 + 23952345 23953789 THE1C-int 1605 + 0 1605 34199 14 2 1 95 0 54 156 0 1 6 0 6 112 0 7 48 9 105 147 6 0 226 0 1 222 4 1 315 0 5 35 0 1 47 chain 556389 chr7 159138663 + 23986790 23992936 L1PA3long 6157 + 5 6157 685 705 1 0 1609 1 0 61 1 3 1015 0 1 1905 0 4 699 0 1 149 chain 11077 chr7 159138663 + 24018441 24018917 L1PA8 5853 - 7 164 155904 86 318 0 19 2 1 51 chain 41571 chr7 159138663 + 24022845 24023334 L1PA7 6471 + 5800 6321 67198 475 1 33 13 chain 12014 chr7 159138663 + 24023343 24023482 L1PA7 6471 + 6328 6467 152137 139 chain 140207 chr7 159138663 + 24027435 24029298 L1PB3 3668 + 223 2116 26113 45 0 2 370 1 0 222 0 5 6 4 0 6 0 2 14 0 1 37 5 9 26 1 8 235 2 1 9 5 0 50 0 3 54 0 1 64 10 0 191 2 3 238 0 5 170 0 20 96 chain 68736 chr7 159138663 + 24036382 24037130 L1PA2 6032 + 5284 6031 48931 492 1 0 255 chain 365376 chr7 159138663 + 24041041 24045004 L1PA2 6032 - 0 3962 11221 157 0 1 104 1 0 2824 1 0 876 chain 97765 chr7 159138663 + 24048591 24049735 L1PA7 6471 - 1 1150 37344 146 1 3 697 0 3 300 chain 23560 chr7 159138663 + 24077425 24077699 AluY 311 + 38 311 112796 92 1 0 181 chain 116608 chr7 159138663 + 24099817 24101741 L1PA10 4194 + 250 4161 32259 21 2 0 15 1 0 8 37 12 8 1 0 21 2 0 28 9 8 9 1 0 15 7 0 8 1 0 79 4 2 308 4 27 30 5 0 517 314 2330 420 3 0 34 2 1 10 chain 24765 chr7 159138663 + 24105572 24105940 L1PB4 2604 + 2188 2552 106082 198 3 1 23 0 3 61 32 27 51 chain 19607 chr7 159138663 + 24114228 24114469 AluY 311 + 40 307 128368 92 0 1 17 0 24 107 0 1 25 chain 85184 chr7 159138663 + 24116083 24117556 L1PB1 5432 - 12 1211 41457 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 36 31 40 7 6 10 2 1 38 2 0 15 2 0 8 6 2 11 1 0 32 269 16 292 1 9 168 6 0 329 0 1 78 chain 51656 chr7 159138663 + 24118291 24118980 LTR12_ 688 - 7 686 57861 297 11 16 175 45 6 17 4 3 21 0 25 119 chain 2671 chr7 159138663 + 24118776 24118819 LTR12_ 688 - 548 591 182036 43 chain 8639 chr7 159138663 + 24121962 24122069 MSTA 426 - 0 108 167542 63 0 1 44 chain 12658 chr7 159138663 + 24122985 24123223 L1PB1 5432 + 4919 5103 149611 51 59 5 71 0 1 5 1 0 51 chain 46427 chr7 159138663 + 24125591 24126196 L1PA8 5853 - 0 598 61657 92 2 1 19 2 1 50 1 0 7 20 19 56 2 0 44 1 0 42 1 0 48 0 1 218 chain 158803 chr7 159138663 + 24127234 24129485 L1PB1 5432 - 8 2131 23486 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 19 6 11 6 5 39 1 0 15 2 1 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 20 115 14 34 0 1 12 16 16 409 4 0 18 0 1 396 11 10 84 0 1 88 1 4 50 8 0 7 0 7 198 0 1 27 1 6 429 chain 145680 chr7 159138663 + 24134918 24136940 L1PA13 3608 - 120 2139 25229 22 9 8 10 2 0 5 3 1 18 4 7 14 15 12 35 1 0 17 6 5 59 6 4 111 1 0 32 5 4 115 0 4 262 6 7 47 6 3 185 0 1 21 1 0 64 16 14 4 0 1 155 2 0 160 0 3 68 6 7 32 6 10 4 0 1 487 chain 32559 chr7 159138663 + 24139426 24139801 L1PA4 6152 - 9 384 79931 375 chain 202219 chr7 159138663 + 24139818 24142062 L1PA3long 6157 - 1 2232 19055 141 1 0 843 17 5 1242 chain 24493 chr7 159138663 + 24198383 24198660 AluSp 311 - 23 300 107577 277 chain 514513 chr7 159138663 + 24312604 24318743 L1PA6 6164 - 2 6164 5724 139 8 0 6 5 13 177 0 1 87 0 2 422 1 0 19 0 1 377 1 0 162 0 3 315 0 1 182 0 1 557 5 0 174 3 0 333 18 19 585 0 4 254 1 2 135 1 2 1365 0 17 297 14 13 94 14 13 343 0 1 37 0 1 8 chain 2804 chr7 159138663 + 24339794 24339828 MIRb 242 - 111 147 228678 20 0 2 14 chain 38186 chr7 159138663 + 24356687 24357155 MER4A1 472 + 0 472 71862 399 1 5 68 chain 5999 chr7 159138663 + 24362701 24362884 MER65A 464 - 31 464 185254 22 7 11 36 2 0 5 46 279 19 13 28 33 chain 14673 chr7 159138663 + 24363003 24363174 L1PA5 6144 + 5968 6139 142350 171 chain 78089 chr7 159138663 + 24394440 24395392 L1P2 5180 + 2203 3164 44467 64 0 1 59 1 0 210 3 4 153 0 3 440 0 5 22 chain 4430 chr7 159138663 + 24410289 24410338 MLT2B1 522 + 473 522 201589 49 chain 10206 chr7 159138663 + 24425649 24425764 MER85 139 + 4 119 159597 115 chain 9195 chr7 159138663 + 24433484 24433705 L1MC1 2226 + 1888 2092 164579 27 1 0 63 24 19 28 5 6 12 33 26 14 5 0 9 chain 40182 chr7 159138663 + 24435863 24436316 LTR7 482 + 0 482 69060 54 2 0 212 0 31 185 chain 299073 chr7 159138663 + 24436318 24439929 HERVH-int 3825 + 0 3825 13474 376 0 1 155 5 0 38 2 1 9 1 0 24 1 14 13 3 0 14 45 7 4 1 0 46 9 28 49 2 1 443 15 0 460 6 33 299 0 10 678 5 0 19 4 0 370 0 3 24 0 210 263 3 8 225 chain 37388 chr7 159138663 + 24441164 24441604 LTR7 482 + 0 482 72974 230 0 31 54 0 1 45 3 0 12 0 13 96 chain 17955 chr7 159138663 + 24450243 24450614 L1PB1 5432 + 5083 5421 132970 20 5 4 7 1 0 22 1 0 11 1 0 11 5 1 8 2 0 53 2 1 15 1 0 45 40 27 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 17 chain 4998 chr7 159138663 + 24463037 24463114 Ricksha_c 1012 + 94 167 195163 48 4 3 6 3 0 16 chain 9335 chr7 159138663 + 24468761 24468866 L1PA4 6152 - 21 126 163878 105 chain 20268 chr7 159138663 + 24472674 24472897 AluY 311 + 53 277 126320 79 0 1 144 chain 18916 chr7 159138663 + 24541705 24541959 L1PA7 6471 - 6 268 130321 6 0 4 139 2 0 6 2 4 26 0 1 16 4 7 53 chain 27085 chr7 159138663 + 24548483 24548778 AluYb8 318 + 12 305 95989 111 3 1 181 chain 27617 chr7 159138663 + 24567131 24567487 THE1A 353 - 0 353 94304 155 2 0 86 2 1 111 chain 8737 chr7 159138663 + 24576950 24577057 U6 107 + 0 107 166990 107 chain 121352 chr7 159138663 + 24577057 24578461 L1PA6 6164 + 4773 6161 30578 61 1 0 226 0 1 953 11 0 9 5 0 138 chain 29326 chr7 159138663 + 24585330 24585636 AluYb8 318 + 1 307 87411 306 chain 159730 chr7 159138663 + 24623281 24625025 L1PA2 6032 - 2 1746 23371 1744 chain 15385 chr7 159138663 + 24642355 24642677 THE1C 375 + 0 340 140245 15 3 1 31 1 2 55 11 18 51 65 76 24 5 6 61 chain 325626 chr7 159138663 + 24666088 24670119 L1PA7 6471 + 2391 6469 12363 5 0 2 54 0 3 20 0 1 166 0 3 61 0 4 115 0 2 231 0 4 93 0 4 342 4 0 219 3 0 14 1 0 67 0 2 9 0 1 195 0 1 146 16 17 139 0 3 142 0 12 69 0 8 261 0 4 434 0 4 48 1 0 172 0 5 128 0 2 11 0 3 333 0 1 282 6 8 8 4 0 12 1 0 52 11 10 6 3 0 106 0 1 25 8 0 8 chain 29200 chr7 159138663 + 24677938 24678249 AluYa5 310 - 0 310 88050 192 1 0 118 chain 142808 chr7 159138663 + 24684694 24686725 L1PA14 3548 - 83 2073 25685 7 2 0 43 1 0 19 1 0 4 19 16 32 17 12 24 6 21 61 6 5 84 1 0 6 2 0 10 8 6 5 2 0 105 2 0 5 2 0 47 2 0 14 3 1 249 1 0 110 46 7 7 0 4 25 2 1 340 0 1 299 0 3 15 2 0 195 0 2 161 5 10 34 chain 22240 chr7 159138663 + 24688278 24688541 AluSc8 310 + 36 302 119168 96 0 3 167 chain 19244 chr7 159138663 + 24698804 24699152 L1PA15 4387 - 61 406 129399 11 3 1 44 17 14 38 3 2 11 4 0 20 1 0 52 8 7 22 1 0 37 12 22 64 chain 207346 chr7 159138663 + 24715016 24717299 L1PA3long 6157 - 5 2309 18693 12 1 0 778 0 17 938 0 1 48 0 4 506 chain 3061 chr7 159138663 + 24718575 24718610 MER58A 224 - 140 175 223804 35 chain 17959 chr7 159138663 + 24734976 24735270 L1PA14 3548 - 63 341 132960 20 1 0 7 2 0 44 1 0 16 1 0 6 1 0 15 4 2 12 2 0 18 15 10 114 1 0 14 chain 24287 chr7 159138663 + 24760252 24760544 AluSp 311 + 0 300 108724 138 5 13 149 chain 35847 chr7 159138663 + 24765038 24765499 LTR2 463 - 0 463 75063 88 22 24 351 chain 59439 chr7 159138663 + 24805936 24806631 L1PA7 6471 - 12 708 53148 33 1 2 661 chain 75397 chr7 159138663 + 24821688 24822537 L1PA5 6144 - 1 850 45825 849 chain 35357 chr7 159138663 + 24828909 24829365 LTR2 463 - 0 463 75722 52 1 0 30 0 1 63 0 6 195 8 9 107 chain 246779 chr7 159138663 + 24829371 24833410 Harlequin-int 5206 - 7 5081 16410 137 2 1 243 9 27 505 1006 2030 876 0 2 443 0 1 23 1 0 233 2 0 195 2 0 5 3 2 170 1 0 12 7 0 7 2 1 143 0 1 4 0 5 8 chain 31798 chr7 159138663 + 24834969 24835408 LTR2 463 - 0 463 81171 52 1 0 30 0 1 4 3 10 38 4 15 44 0 1 33 0 1 119 8 9 49 0 3 54 chain 26763 chr7 159138663 + 24874934 24875404 L1PA15 4387 + 3913 4366 97114 19 1 0 83 0 2 56 0 1 30 2 1 25 13 12 39 5 4 22 4 0 6 5 4 50 6 3 43 4 2 12 14 9 20 1 0 10 chain 11088 chr7 159138663 + 24883920 24884112 MER30 238 + 36 237 155857 72 4 0 12 3 19 14 6 0 8 0 6 17 9 6 47 chain 28093 chr7 159138663 + 24976593 24976976 THE1C 375 - 0 375 92670 25 1 0 144 0 4 34 5 0 132 12 6 30 chain 11747 chr7 159138663 + 24979471 24979616 L1PA8 5853 + 5705 5848 153266 39 1 0 16 1 0 88 chain 52714 chr7 159138663 + 25024190 25024842 PABL_A 660 - 0 660 57181 214 1 2 162 5 3 189 0 9 81 chain 525727 chr7 159138663 + 25035898 25042028 L1PA6 6164 - 6 6164 4611 14 0 3 443 0 2 806 0 1 203 4 6 39 1 0 272 0 1 116 0 1 372 0 10 600 0 5 74 0 1 606 0 4 293 8 9 645 0 1 1064 1 0 371 25 23 173 chain 134821 chr7 159138663 + 25057617 25059854 SVA_F 1814 + 335 1814 27052 41 9 0 512 1 0 48 0 1 10 761 16 37 2 0 11 1 0 176 1 0 627 chain 26368 chr7 159138663 + 25058239 25058672 SVA_F 1814 + 962 1293 98539 31 13 13 132 2 1 74 49 0 61 52 0 19 chain 842 chr7 159138663 + 25058491 25058518 SVA_F 1814 + 988 1015 122507 27 chain 4703 chr7 159138663 + 25058601 25058653 SVA_F 1814 + 971 1021 114006 30 2 0 20 chain 16099 chr7 159138663 + 25058672 25058850 SVA_F 1814 + 1040 1219 114006 174 0 1 4 chain 3868 chr7 159138663 + 25058875 25058999 SVA_F 1814 + 1015 1139 122507 124 chain 81610 chr7 159138663 + 25063732 25064808 L1PB3 3668 - 589 1657 42924 81 2 0 11 10 8 39 1 0 107 0 2 165 1 0 81 3 2 11 1 0 316 0 2 140 3 0 8 1 0 95 chain 565381 chr7 159138663 + 25081479 25087510 L1HS 6032 - 1 6032 190 6031 chain 8191 chr7 159138663 + 25091501 25091708 L1PB1 5432 + 5236 5422 169999 42 6 5 13 1 0 4 20 9 17 32 27 17 1 0 22 1 0 12 1 0 18 chain 7131 chr7 159138663 + 25097698 25097823 MLT1D 503 - 333 459 176536 35 26 27 64 chain 35318 chr7 159138663 + 25102714 25103197 MER1A 529 + 41 529 75774 49 4 0 192 11 18 37 0 1 120 6 7 64 chain 26541 chr7 159138663 + 25147817 25148115 AluYk4 311 + 0 297 97878 264 1 0 33 chain 9193 chr7 159138663 + 25149539 25149647 THE1B 368 + 248 356 164592 108 chain 116887 chr7 159138663 + 25149659 25151507 THE1B-int 1605 + 0 1605 32166 11 0 4 98 0 3 65 4 0 64 13 14 173 7 32 22 0 1 225 2 0 7 10 12 62 1 7 76 298 0 47 6 17 85 0 1 10 0 1 105 8 12 433 0 1 11 0 1 5 chain 17043 chr7 159138663 + 25151507 25151877 THE1B 368 + 0 366 135486 42 1 0 61 34 35 13 96 93 93 1 0 29 chain 27056 chr7 159138663 + 25154207 25154509 AluYk4 311 + 8 309 96092 256 1 0 45 chain 10455 chr7 159138663 + 25165693 25165865 L1MA3 4352 - 36 204 158468 28 1 0 6 1 0 24 2 0 28 5 1 24 0 2 7 5 7 41 chain 64922 chr7 159138663 + 25171199 25171980 LTR17 781 - 13 781 50604 412 4 0 28 0 1 18 10 0 309 chain 3584 chr7 159138663 + 25187824 25187865 MER5B 177 - 136 177 213922 41 chain 21401 chr7 159138663 + 25204262 25204741 L1PB1 5432 - 2 454 122506 4 1 0 4 1 0 18 10 12 22 1 0 24 2 0 14 1 0 5 3 1 18 13 4 8 3 0 15 1 0 41 9 8 13 8 7 43 17 11 14 1 0 6 1 0 8 0 1 15 38 39 97 chain 21285 chr7 159138663 + 25216857 25217127 AluSc 308 + 38 304 122914 91 2 0 149 3 1 25 chain 2942 chr7 159138663 + 25228600 25228633 LTR54 533 + 26 59 226278 33 chain 8980 chr7 159138663 + 25230870 25230990 MER57-int 2662 - 2436 2559 165716 76 5 7 34 0 1 5 chain 33933 chr7 159138663 + 25234667 25235125 MER4A1 472 + 0 458 77726 225 0 21 16 22 1 195 chain 41420 chr7 159138663 + 25235887 25236466 LTR19B 566 - 0 566 67394 180 13 14 40 30 14 101 0 1 48 6 7 161 chain 12048 chr7 159138663 + 25259665 25259831 L1PA8 5853 - 0 164 151992 93 1 0 19 2 1 51 chain 2933 chr7 159138663 + 25270721 25270754 LTR41B 718 - 9 42 226478 33 chain 9133 chr7 159138663 + 25304275 25304480 U3 216 + 1 195 164892 56 81 70 68 chain 4985 chr7 159138663 + 25316422 25316484 MER5A 189 - 127 189 195302 62 chain 27946 chr7 159138663 + 25326842 25327202 MER57B1 401 + 0 368 93186 271 3 0 61 0 11 25 chain 8637 chr7 159138663 + 25379002 25379099 L1PA5 6144 - 12 109 167556 97 chain 28875 chr7 159138663 + 25394680 25394988 AluYb9 318 - 10 318 89564 308 chain 4657 chr7 159138663 + 25401815 25402092 MLT1A1 405 - 58 405 198995 52 13 17 12 168 230 14 3 7 15 chain 335550 chr7 159138663 + 25478169 25483127 L1PA11 4918 - 289 4910 12009 18 2 0 5 2 0 7 3 1 5 1 0 8 14 7 11 2 0 13 1 0 15 13 9 8 2 0 5 3 0 7 4 0 35 2 0 68 2 0 12 1 0 65 5 0 17 2 0 59 19 0 188 16 0 105 0 12 124 47 17 169 1 2 286 1 2 356 11 6 267 0 2 13 0 1 159 10 0 210 1 0 4 9 5 68 0 4 108 0 2 45 14 21 145 5 10 109 1 2 108 0 1 179 0 4 28 3 4 135 1 8 127 0 2 55 0 4 167 3 0 5 0 3 112 273 0 120 0 1 205 58 72 117 2 7 132 1 0 3 2 0 33 1 0 50 2 0 15 1 0 37 3 0 36 2 0 34 chain 248115 chr7 159138663 + 25488469 25491207 L1PA4 6152 + 3413 6151 16358 2738 chain 22918 chr7 159138663 + 25492571 25492863 AluSc8 310 + 6 300 116024 125 5 8 22 1 0 139 chain 18120 chr7 159138663 + 25523667 25523873 L1PA7 6471 + 6245 6451 132541 206 chain 7406 chr7 159138663 + 25528167 25528275 MLT1B 390 + 262 371 174734 45 5 6 58 chain 26527 chr7 159138663 + 25529161 25529473 AluY 311 + 0 308 97940 126 4 0 182 chain 2984 chr7 159138663 + 25598419 25598458 L1MB7 1623 + 1453 1491 225355 25 1 0 13 chain 3944 chr7 159138663 + 25607066 25607109 MIR 256 + 102 145 208205 43 chain 3747 chr7 159138663 + 25610296 25610376 MADE1 96 - 0 96 211208 21 23 39 36 chain 557369 chr7 159138663 + 25642653 25648669 L1PA2 6032 + 13 6030 570 4972 0 1 1044 chain 4837 chr7 159138663 + 25650657 25650756 MER33 330 - 182 280 196914 25 30 29 44 chain 6431 chr7 159138663 + 25675181 25675328 L1PB3 3668 + 3482 3614 181769 18 1 0 3 4 0 25 6 4 34 7 3 13 1 0 13 7 4 15 chain 3357 chr7 159138663 + 25688406 25688459 MER5A 189 - 72 126 217920 37 4 5 12 chain 75655 chr7 159138663 + 25691136 25691958 L1PA2 6032 - 0 822 45685 822 chain 10218 chr7 159138663 + 25731862 25732124 L1MB2 1706 + 1453 1694 159517 59 111 92 7 1 0 6 1 0 77 chain 44374 chr7 159138663 + 25739585 25740457 LTR12D 1347 - 0 942 63725 14 10 0 50 0 4 18 0 3 131 91 290 117 48 0 14 44 13 27 78 0 99 0 31 131 chain 3438 chr7 159138663 + 25740078 25740121 LTR12D 1347 - 593 636 205144 43 chain 2670 chr7 159138663 + 25740194 25740227 LTR12D 1347 - 689 722 207913 33 chain 114275 chr7 159138663 + 25740523 25741817 L1PA5 6144 - 1612 2906 32874 600 1 2 143 1 0 549 chain 139878 chr7 159138663 + 25741817 25743410 L1PA5 6144 + 4535 6128 26159 123 1 0 129 0 5 79 0 1 815 0 2 202 1 0 99 6 0 138 chain 22974 chr7 159138663 + 25743830 25744110 AluY 311 + 26 307 115737 106 0 1 174 chain 25174 chr7 159138663 + 25759460 25759756 AluSx1 309 + 2 293 103887 6 5 0 285 chain 553321 chr7 159138663 + 25783452 25789483 L1PA2 6032 + 0 6032 1036 74 0 1 180 2 1 108 0 1 55 0 1 10 1 0 2503 0 1 2402 1 0 695 chain 4728 chr7 159138663 + 25820457 25820528 MLT1C 463 + 53 137 198185 37 4 16 19 0 1 11 chain 11758 chr7 159138663 + 25865018 25865321 L1MB8 1703 + 1437 1675 153231 15 13 21 115 88 27 12 3 0 3 6 0 32 3 0 13 chain 27163 chr7 159138663 + 25865824 25866184 L1MA3 4352 + 2104 2461 95710 33 2 1 139 2 0 33 4 3 13 0 1 134 chain 42090 chr7 159138663 + 25964280 25964739 L1PA2 6032 - 3 462 66507 459 chain 75130 chr7 159138663 + 25964739 25965599 L1P1 4361 + 3246 4108 45954 730 9 12 5 1 0 115 chain 6029 chr7 159138663 + 25995191 25995259 MER41B 635 + 479 547 184988 68 chain 4641 chr7 159138663 + 26027311 26027363 MADE1 96 + 44 96 199166 52 chain 10340 chr7 159138663 + 26039213 26039349 Tigger1 2417 - 1097 1235 158946 54 1 0 6 0 1 59 0 2 16 chain 109646 chr7 159138663 + 26055436 26057005 L1PA14 3548 - 83 1633 34290 10 6 0 40 1 0 19 1 0 3 1 0 15 4 2 26 23 21 108 1 0 74 0 4 6 1 0 6 2 0 20 4 0 51 0 6 49 15 11 34 9 7 14 3 1 250 6 5 146 1 0 76 0 1 120 1 2 86 1 2 46 2 1 288 chain 4498 chr7 159138663 + 26063185 26063814 L1PB1 5432 - 8 607 61946 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 9 0 11 2 0 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 17 12 8 1 0 23 3 0 10 6 11 269 chain 39499 chr7 159138663 + 26063829 26064259 LTR7Y 441 - 10 441 70023 301 1 2 128 chain 290560 chr7 159138663 + 26065513 26068988 HERVH-int 3825 - 0 3825 13986 225 3 8 254 8 218 37 11 13 1049 0 10 202 0 1 92 4 31 231 0 2 314 0 13 346 1 0 50 64 149 10 1 0 38 5 0 243 0 2 287 chain 3965 chr7 159138663 + 26068341 26068389 HERVH-int 3825 - 3246 3293 207917 9 1 0 38 chain 40615 chr7 159138663 + 26068988 26069429 LTR7Y 441 - 0 441 68413 441 chain 1452 chr7 159138663 + 26069429 26069632 L1PB1 5432 - 607 810 61946 203 chain 53439 chr7 159138663 + 26077134 26077745 L1PA7 6471 - 4 619 56730 9 0 1 179 0 2 144 0 1 279 chain 16139 chr7 159138663 + 26120101 26120319 MER39B 650 + 0 255 137940 137 1 37 6 0 2 50 1 0 23 chain 22261 chr7 159138663 + 26129131 26129465 THE1A 353 + 0 334 119064 109 2 1 64 0 1 27 1 0 10 33 34 88 chain 82286 chr7 159138663 + 26148201 26149923 HSMAR2 1300 + 10 1267 42634 54 21 42 31 0 1 154 1 0 33 157 2 66 0 4 7 31 24 61 20 19 94 0 1 122 6 9 314 1 0 5 334 24 42 21 4 122 7 5 7 1 0 10 chain 7458 chr7 159138663 + 26162337 26162477 L1MB3 1562 + 1235 1413 174407 25 20 47 41 8 19 46 chain 194948 chr7 159138663 + 26162520 26164904 HERVL-int 5654 + 3266 5654 19587 73 5 6 24 2 1 457 1 0 105 0 2 10 6 7 89 12 14 867 1 0 58 0 3 6 0 2 235 8 1 181 0 13 9 1 0 4 9 0 221 chain 31965 chr7 159138663 + 26164904 26165301 MLT2A1 477 + 0 397 80910 40 1 0 46 0 1 83 4 1 208 0 3 15 chain 135490 chr7 159138663 + 26187081 26188684 SVA_D 2077 + 0 2066 26927 594 0 42 56 0 35 38 0 40 103 2 0 4 1 0 2 0 38 34 0 1 10 0 1 35 2 5 10 0 1 37 0 1 15 0 1 22 4 0 17 0 311 27 7 5 574 2 0 7 chain 195649 chr7 159138663 + 26203285 26205499 L1PA5 6144 - 7 2232 19531 1026 1 2 43 2 1 205 0 9 502 0 2 435 chain 22260 chr7 159138663 + 26208046 26208467 L1PB1 5432 - 253 589 119072 11 2 0 9 5 1 12 10 8 24 1 0 9 87 2 220 0 9 31 chain 146194 chr7 159138663 + 26215479 26217217 SVA_A 1864 - 0 1845 25133 537 45 17 65 2 0 66 0 36 45 2 0 111 2 110 187 2 0 42 3 0 629 chain 21841 chr7 159138663 + 26233744 26234021 AluY 311 + 11 288 120848 33 1 0 86 1 2 156 chain 5761 chr7 159138663 + 26250206 26250296 Charlie1b 519 - 4 90 187540 10 2 0 29 2 1 15 1 0 31 chain 7198 chr7 159138663 + 26263398 26263488 L1MA8 2339 - 875 964 176073 19 1 0 70 chain 33568 chr7 159138663 + 26266907 26267413 MLT2A1 477 + 2 477 78292 144 0 1 24 3 0 33 0 1 16 0 1 163 62 35 9 4 0 8 7 3 27 0 4 6 chain 4909 chr7 159138663 + 26276051 26276152 MSTA 426 + 251 360 196166 42 29 37 30 chain 121121 chr7 159138663 + 26284540 26286674 HERVH48-int 3304 + 629 3242 30661 19 3 0 15 1 0 4 148 731 28 0 1 143 1 0 89 1 0 139 0 9 125 2 0 7 0 1 253 1 0 19 5 3 67 2 1 10 2 1 47 1 0 229 1 0 4 2 11 7 1 0 44 4 2 13 4 1 30 2 0 16 156 117 27 3 0 8 10 8 23 13 5 9 1 0 23 3 0 5 1 0 45 1 0 4 3 1 65 2 0 11 47 33 70 3 1 13 76 53 23 chain 25380 chr7 159138663 + 26289883 26290213 MER48 407 + 43 405 102781 93 1 21 102 11 23 123 chain 29711 chr7 159138663 + 26295281 26295685 MER4E 760 - 2 413 85792 61 7 8 55 1 2 50 0 2 46 2 1 32 1 0 73 0 5 76 chain 160378 chr7 159138663 + 26300852 26302654 SVA_D 2077 + 6 2077 23289 31 5 0 11 1 0 5 0 2 781 1 2 42 0 269 239 0 1 40 0 1 23 1 2 622 chain 6528 chr7 159138663 + 26310984 26311089 Tigger1 2417 - 944 1053 181029 70 16 20 19 chain 24380 chr7 159138663 + 26311094 26311405 LTR7B 505 + 0 384 108199 105 0 10 60 0 38 12 0 25 4 1 0 24 0 2 85 1 0 19 chain 5586 chr7 159138663 + 26317097 26317163 MER57A1 433 + 177 243 189220 66 chain 5575 chr7 159138663 + 26320047 26320120 LTR45B 484 + 349 421 189327 55 1 0 17 chain 10574 chr7 159138663 + 26323037 26323171 MER34 540 + 366 502 157937 14 0 2 120 chain 29521 chr7 159138663 + 26329844 26330151 AluYa5 310 - 3 310 86564 307 chain 28535 chr7 159138663 + 26375352 26375650 AluYd8 298 - 0 298 91029 298 chain 4129 chr7 159138663 + 26396219 26396272 MamRep434 362 - 38 91 205531 53 chain 16261 chr7 159138663 + 26440616 26440820 Tigger3c 601 - 0 203 137579 184 1 0 19 chain 22951 chr7 159138663 + 26456258 26456560 AluY 311 + 0 302 115848 67 0 7 49 1 0 166 3 0 7 3 0 6 chain 82187 chr7 159138663 + 26463796 26464740 L1PA5 6144 - 5 954 42686 51 0 1 355 0 5 433 1 0 104 chain 14110 chr7 159138663 + 26490912 26491092 L1PA6 6164 - 2 183 144175 139 0 7 12 8 2 21 chain 47202 chr7 159138663 + 26502766 26503302 L1PA4 6152 - 1 532 61041 201 10 5 325 chain 14747 chr7 159138663 + 26603467 26603675 L1P3 4156 - 19 223 142111 22 2 1 9 2 0 99 1 0 73 chain 69156 chr7 159138663 + 26603675 26604559 L1PA8A 6298 + 5413 6290 48736 79 0 8 56 12 14 148 21 4 568 chain 58560 chr7 159138663 + 26672466 26673105 L1PA5 6144 - 6 645 53668 639 chain 8501 chr7 159138663 + 26673476 26673636 L1PB1 5432 + 5281 5422 168285 15 14 1 30 2 0 4 1 0 15 1 0 45 2 1 10 1 0 20 chain 12972 chr7 159138663 + 26742750 26742939 MER30B 195 - 0 189 148343 35 7 4 74 5 8 68 chain 26577 chr7 159138663 + 26760167 26760544 THE1C 375 - 0 375 97735 25 1 0 137 16 13 19 0 3 90 0 1 32 2 0 55 chain 6930 chr7 159138663 + 26780768 26780851 L1MA3 4352 + 4119 4202 177956 83 chain 138172 chr7 159138663 + 26795803 26797392 L1PA5 6144 - 3 1600 26462 24 0 2 333 3 1 486 0 1 4 0 3 8 0 4 500 1 0 207 12 13 11 chain 10938 chr7 159138663 + 26804215 26804348 L1PA7 6471 - 1 134 156452 133 chain 335768 chr7 159138663 + 26806412 26810530 L1P3 4156 - 17 4153 12006 24 2 1 7 2 0 551 10 14 131 0 4 449 1 0 68 0 4 83 0 1 97 0 4 72 6 1 178 0 3 101 1 0 144 1 3 429 0 4 16 1 0 440 0 1 95 1 5 135 0 1 86 1 2 169 2 0 496 2 1 58 11 10 248 chain 18248 chr7 159138663 + 26823362 26823571 L1PA3long 6157 + 5948 6157 132212 209 chain 261906 chr7 159138663 + 26837793 26842862 L1MA1 4479 + 229 4131 15591 49 2 0 84 0 3 51 101 22 234 0 9 60 55 50 24 0 2 153 1 0 14 0 3 5 149 2 155 1 0 24 1 3 12 0 1 5 1 0 64 0 5 422 321 12 262 6 22 60 3 1 4 1 0 36 3 2 20 1 5 62 0 4 75 13 11 80 0 1 137 0 3 24 6 5 53 0 2 13 32 18 9 0 1 24 1 0 34 4 3 103 2 0 33 1 0 61 2 0 93 1 0 27 2 0 84 0 1 89 2 0 15 5 1 76 1 0 12 5 0 53 2 1 37 7 8 7 1 0 19 3 0 115 6 0 6 0 4 87 9 10 83 715 95 38 1 0 20 2 0 13 1 0 87 1 0 6 8 5 114 8 7 27 2 0 26 chain 23389 chr7 159138663 + 26839463 26839749 AluY 311 + 8 289 113703 118 5 0 163 chain 166588 chr7 159138663 + 26857258 26859200 L1PA7 6471 + 4508 6470 22447 74 0 3 746 0 6 68 0 2 62 0 5 147 0 3 506 0 1 68 0 4 117 0 1 15 4 0 121 2 1 12 chain 17048 chr7 159138663 + 26863077 26863306 Tigger1 2417 + 648 879 135464 130 12 14 87 chain 20042 chr7 159138663 + 26872779 26873032 AluY 311 + 48 298 127004 60 1 2 16 2 0 139 2 0 33 chain 333236 chr7 159138663 + 26873032 26876958 L1PA7 6471 + 2497 6464 12079 137 1 2 214 7 27 9 0 4 206 0 4 218 0 1 165 3 2 837 1 0 161 0 1 34 0 2 155 0 4 187 1 0 147 1 0 588 0 5 14 1 0 72 0 1 54 0 1 316 0 2 397 chain 23823 chr7 159138663 + 26891062 26891347 L1PA5 6144 + 5861 6144 111346 130 1 0 4 0 1 139 2 0 9 chain 41930 chr7 159138663 + 26906312 26906854 Tigger1 2417 + 927 1477 66720 40 0 1 23 5 6 383 0 3 77 0 3 14 chain 17112 chr7 159138663 + 26937949 26938135 L1PA2 6032 - 2 188 135275 186 chain 116378 chr7 159138663 + 26943525 26944808 L1PA3long 6157 + 4841 6157 32319 466 0 5 127 0 28 690 chain 418011 chr7 159138663 + 26971195 26975883 L1PA4 6152 + 1461 6152 9585 387 0 1 352 0 2 499 0 1 468 1 0 345 1 0 424 0 1 225 0 2 1024 13 6 103 1 0 598 0 1 241 0 5 6 chain 20737 chr7 159138663 + 26981199 26981451 AluSq 315 + 43 298 124826 89 0 3 163 chain 5003 chr7 159138663 + 26992378 26992438 MLT1D 503 - 0 60 195113 60 chain 26099 chr7 159138663 + 26993383 26993681 AluSp 311 - 5 304 99622 164 0 1 134 chain 243140 chr7 159138663 + 27009179 27012562 L1PA13 3608 - 123 3470 16608 20 1 3 14 2 0 5 2 0 47 2 0 40 2 1 20 1 0 61 2 0 29 12 17 68 1 0 32 1 0 504 0 2 271 4 7 5 3 0 374 0 4 9 1 2 46 8 1 122 4 0 4 1 0 13 9 10 275 0 1 314 0 3 76 1 2 171 1 0 4 0 2 96 0 1 36 1 12 130 2 0 98 1 0 17 2 0 5 15 0 13 2 0 16 1 0 19 6 2 16 2 0 11 4 6 11 3 2 120 13 11 66 28 17 19 8 5 12 2 1 26 chain 22162 chr7 159138663 + 27036210 27036692 MLT2A2 560 + 0 560 119538 97 45 0 19 17 19 34 11 9 15 55 56 53 3 112 26 0 4 14 0 5 37 1 0 5 1 4 5 2 0 36 0 4 6 chain 203599 chr7 159138663 + 27036692 27042066 HERVL-int 5654 + 0 5400 8859 323 0 2 140 1 4 130 0 5 247 23 39 364 10 8 256 6 16 739 8 9 55 0 1 391 8 0 72 5 4 36 0 1 372 4 5 58 0 4 811 0 1 270 2 0 558 1 0 4 9 10 237 3 0 7 1 0 80 7 5 136 chain 539966 chr7 159138663 + 27042073 27048208 L1PA5 6144 - 5 6144 2821 1794 0 4 409 0 1 221 0 3 543 1 0 426 8 9 34 0 1 499 0 2 354 0 1 694 5 0 299 4 1 844 chain 9093 chr7 159138663 + 27048243 27048483 HERVL-int 5654 + 5405 5645 8859 240 chain 252121 chr7 159138663 + 27053977 27058322 L1MA1 4479 + 264 3888 16122 16 2 0 73 4 0 64 0 1 194 2 11 77 777 73 25 4 0 38 1 0 124 4 9 83 1 2 57 1 5 37 25 5 328 0 1 27 12 13 151 0 2 141 9 11 252 2 0 82 0 6 49 1 0 381 1 0 4 4 16 46 1 0 57 0 1 45 2 0 27 6 5 63 1 0 62 1 5 25 1 0 25 5 3 160 3 0 11 2 0 17 5 1 76 1 0 12 5 0 11 5 12 19 14 10 42 0 3 29 3 0 285 0 1 36 48 44 71 1 0 20 2 0 13 1 0 9 3 0 6 1 0 14 chain 163568 chr7 159138663 + 27083741 27085754 SVA_D 2077 + 76 2061 22867 728 0 1 111 51 1 26 45 5 39 0 51 65 1 0 139 37 66 32 1 0 44 1 0 4 24 0 13 4 0 21 0 1 202 0 1 103 0 10 322 chain 3657 chr7 159138663 + 27084588 27084631 SVA_D 2077 + 1188 1231 94493 43 chain 3827 chr7 159138663 + 27084657 27084702 SVA_D 2077 + 1257 1302 94493 45 chain 2255 chr7 159138663 + 27084946 27084983 SVA_D 2077 + 1015 1054 77903 19 1 2 7 0 1 10 chain 22510 chr7 159138663 + 27087298 27087588 AluSq2 311 + 0 288 117986 119 1 3 129 4 0 37 chain 24738 chr7 159138663 + 27088883 27089166 AluSp 311 + 8 292 106231 133 0 1 150 chain 7103 chr7 159138663 + 27117041 27117511 Tigger3c 601 + 0 160 176739 18 314 1 85 32 38 6 3 0 12 chain 11804 chr7 159138663 + 27122709 27122894 MER30 238 - 0 198 153017 26 16 13 66 10 26 67 chain 23114 chr7 159138663 + 27272151 27272436 AluSp 311 + 8 288 115070 112 3 0 12 2 0 156 chain 68572 chr7 159138663 + 27315709 27316490 LTR17 781 + 0 781 49001 327 1 0 446 0 1 7 chain 28185 chr7 159138663 + 27322659 27322953 AluYk12 309 + 11 305 92360 294 chain 12992 chr7 159138663 + 27326035 27326214 MER30 238 + 40 238 148273 49 0 1 17 4 0 7 1 23 101 chain 2905 chr7 159138663 + 27327138 27327195 L1MA2 4263 + 4070 4124 226957 31 6 5 11 2 0 7 chain 324911 chr7 159138663 + 27330729 27334361 L1PA5 6144 - 15 3652 12394 149 0 1 18 1 0 5 2 3 658 0 4 1154 0 1 978 1 0 666 chain 152527 chr7 159138663 + 27347751 27349439 L1PA3long 6157 - 0 1691 24281 132 1 2 1034 0 1 160 0 1 361 chain 22769 chr7 159138663 + 27414576 27414933 MSTA 426 - 27 426 116729 74 9 29 57 24 22 69 19 43 105 chain 60374 chr7 159138663 + 27440381 27441071 L1PA5 6144 - 1 698 52645 10 0 7 680 chain 13725 chr7 159138663 + 27442190 27442397 MLT1B 390 - 179 381 145526 12 8 12 33 8 0 134 1 0 11 chain 9337 chr7 159138663 + 27457388 27457530 L1MA2 4263 - 150 286 163870 9 1 0 41 19 14 72 chain 207398 chr7 159138663 + 27486824 27489268 L1P2 5180 - 2685 5150 18690 157 0 1 18 1 0 1071 1 0 324 0 9 117 0 15 100 1 0 168 1 0 232 0 1 35 1 0 53 2 1 32 1 2 9 1 0 84 2 3 33 chain 25242 chr7 159138663 + 27514348 27514616 AluYa5 310 + 37 305 103520 268 chain 74338 chr7 159138663 + 27519036 27520019 L1PA8 5853 + 4870 5853 46340 128 18 21 73 7 8 155 0 1 308 1 0 44 2 0 74 1 0 5 2 1 21 0 2 29 2 1 19 1 0 93 chain 538964 chr7 159138663 + 27541827 27547806 L1PA3long 6157 - 17 6147 2998 707 0 1 98 0 3 17 0 4 150 0 5 664 0 2 541 0 1 1739 0 2 1061 0 2 239 0 128 411 0 1 211 0 1 81 0 1 60 chain 5678 chr7 159138663 + 27562311 27562497 L1MB7 1623 - 194 375 188319 6 1 0 58 84 84 13 2 0 3 2 0 17 chain 2673 chr7 159138663 + 27604375 27604446 L1ME1 1623 - 1371 1444 230486 11 10 11 27 9 10 14 chain 9625 chr7 159138663 + 27633542 27633647 AluYc 301 + 172 277 162467 105 chain 29350 chr7 159138663 + 27682261 27682569 AluYa5 310 - 2 310 87290 308 chain 33095 chr7 159138663 + 27713892 27714272 L1PA6 6164 + 5782 6162 79060 380 chain 4366 chr7 159138663 + 27719221 27719302 MER33 330 - 51 130 202380 24 22 20 35 chain 3066 chr7 159138663 + 27746174 27746210 MLT2D 439 + 403 439 223645 36 chain 23323 chr7 159138663 + 27751577 27751858 AluSp 311 - 9 289 114072 176 2 1 103 chain 4031 chr7 159138663 + 27777506 27777592 MER46C 351 + 214 319 206918 15 25 44 46 chain 73939 chr7 159138663 + 27781278 27782240 LTR5_Hs 974 - 0 974 46547 80 0 6 17 20 18 19 8 15 163 1 0 138 0 1 49 0 1 177 0 1 120 1 0 169 chain 30427 chr7 159138663 + 27783405 27783723 AluYb8 318 - 0 318 83602 318 chain 26502 chr7 159138663 + 27783751 27784043 AluYf4 310 - 18 310 98036 292 chain 7486 chr7 159138663 + 27793134 27793287 MER44A 345 - 35 195 174235 24 48 49 45 0 1 17 0 5 19 chain 9509 chr7 159138663 + 27813112 27813234 L1MB8 1703 - 125 248 163020 66 0 1 56 chain 4566 chr7 159138663 + 27815184 27815286 MLT2F 649 + 88 226 200044 12 2 0 14 0 1 29 28 65 17 chain 2910 chr7 159138663 + 27860560 27860685 Tigger4a 237 + 3 120 226886 34 59 59 13 7 0 6 1 0 5 chain 20644 chr7 159138663 + 27886586 27886888 AluSp 311 - 10 291 125147 114 0 6 21 16 0 26 20 9 105 chain 130345 chr7 159138663 + 27893201 27894789 L1PA7 6471 - 3209 4813 28007 119 0 1 243 6 10 252 5 6 64 0 2 533 1 9 365 chain 264684 chr7 159138663 + 27894790 27899496 L1PA7 6471 + 3255 6469 15457 19 8 6 175 0 5 37 1 0 46 0 5 22 0 4 566 1529 0 275 4 0 261 5 21 430 0 1 156 0 1 199 0 1 114 0 4 18 1 0 38 0 2 419 0 5 354 1 2 28 chain 107681 chr7 159138663 + 27895666 27897191 LTR12C 1709 - 0 1709 34802 84 2 1 396 51 20 75 0 129 52 30 26 33 0 81 99 37 0 322 10 53 42 17 18 184 1 4 90 chain 1892 chr7 159138663 + 27896495 27896525 LTR12C 1709 - 848 877 165145 24 1 0 5 chain 4785 chr7 159138663 + 27929813 27929875 MER63B 433 - 52 114 197520 62 chain 22319 chr7 159138663 + 27963711 27963982 AluSg7 307 - 23 295 118833 152 0 1 119 chain 13246 chr7 159138663 + 27985525 27985770 MER47A 366 + 35 287 147301 62 0 2 48 53 62 54 4 0 24 chain 6772 chr7 159138663 + 28014387 28014499 MSTA 426 - 32 142 179162 27 5 0 38 17 20 25 chain 384338 chr7 159138663 + 28021618 28026248 L1P2 5180 + 2 4661 10637 141 0 11 93 1 0 33 22 21 196 11 10 8 1 0 222 0 10 40 11 9 137 0 25 501 5 4 854 4 2 4 1 0 154 0 1 582 0 1 115 0 1 12 1 0 796 13 4 672 chain 134523 chr7 159138663 + 28026267 28027823 SVA_B 1603 + 0 1603 27106 9 0 2 11 0 5 9 1 8 735 0 40 138 9 5 14 1 0 14 1 0 18 4 0 149 0 3 443 chain 133245 chr7 159138663 + 28028560 28030061 L1PA5 6144 + 4635 6142 27384 486 0 7 166 1 0 848 chain 27697 chr7 159138663 + 28053985 28054336 THE1B 368 + 0 363 94055 44 0 15 109 1 0 32 2 0 163 chain 4022 chr7 159138663 + 28088302 28088564 L1MB7 1623 + 1364 1581 207045 10 2 1 44 185 141 21 chain 29414 chr7 159138663 + 28130424 28130744 AluYb8 318 - 3 318 87004 7 5 0 308 chain 24384 chr7 159138663 + 28139100 28139394 AluSp 311 - 17 311 108170 294 chain 27707 chr7 159138663 + 28167243 28167640 THE1C 375 - 0 374 94015 26 1 0 132 0 3 5 3 0 89 33 11 108 chain 7209 chr7 159138663 + 28237281 28237382 MER3 215 - 51 146 176001 9 5 0 5 1 0 81 chain 5520 chr7 159138663 + 28260293 28260361 MER5A 189 + 0 69 189838 21 0 1 47 chain 3931 chr7 159138663 + 28269373 28269421 MADE1 96 - 49 96 208393 4 1 0 43 chain 131499 chr7 159138663 + 28294332 28295802 L1PA4 6152 - 11 1478 27750 173 1 0 667 1 0 323 1 0 304 chain 8550 chr7 159138663 + 28296245 28296345 L1PA8A 6298 - 9 109 168018 100 chain 21363 chr7 159138663 + 28303545 28303900 MER51B 395 + 16 395 122644 18 13 32 34 10 16 84 35 35 10 1 0 150 chain 77602 chr7 159138663 + 28322623 28323515 L1PA7 6471 - 1 898 44690 339 0 1 427 0 1 78 0 3 48 chain 19887 chr7 159138663 + 28323525 28323772 L1PA7 6471 + 5311 5549 127527 29 9 0 209 chain 23569 chr7 159138663 + 28326722 28327090 THE1D 372 - 0 372 112749 33 0 1 91 61 64 183 chain 8945 chr7 159138663 + 28329959 28330092 MER20 218 + 36 159 165895 42 13 4 6 1 0 71 chain 28781 chr7 159138663 + 28346168 28346479 AluYa5 310 - 0 310 89977 192 1 0 118 chain 29244 chr7 159138663 + 28362061 28362468 L1PA8 5853 - 0 395 87823 93 1 0 15 10 9 44 1 0 11 1 0 73 2 0 7 6 0 41 1 0 24 0 1 77 chain 230756 chr7 159138663 + 28374079 28377536 L1MA3 4352 - 874 4315 17269 75 16 17 150 0 3 4 1 0 15 8 0 84 0 1 143 0 2 27 46 47 36 0 4 113 1 2 99 14 15 56 1 0 69 5 0 67 2 0 81 20 16 33 15 14 222 0 5 168 0 1 125 1 3 117 12 11 125 1 0 178 0 1 178 34 31 19 10 11 29 2 1 14 0 1 5 1 0 185 1 0 8 1 0 7 1 0 88 2 0 5 1 0 4 0 1 6 0 1 79 37 36 157 2 1 9 12 13 41 18 18 14 0 1 76 1 0 4 3 0 75 6 8 48 5 0 19 1 0 119 chain 32743 chr7 159138663 + 28393780 28394225 MLT2A1 477 + 1 477 79628 99 0 1 70 7 4 73 0 1 136 21 53 39 chain 15855 chr7 159138663 + 28416823 28417047 MER33 330 + 6 253 138788 34 2 0 89 1 26 98 chain 19085 chr7 159138663 + 28417349 28417579 AluY 311 + 84 311 129861 25 1 0 24 2 0 178 chain 9932 chr7 159138663 + 28417947 28418060 L1PA4 6152 + 6027 6140 160920 113 chain 3932 chr7 159138663 + 28423986 28424042 MLT1D 503 - 0 54 208379 24 3 0 4 0 1 25 chain 24922 chr7 159138663 + 28426710 28427197 L1PA11 4918 - 289 736 105215 18 133 103 20 1 0 13 2 0 73 2 0 7 4 3 7 0 3 54 7 0 146 chain 4754 chr7 159138663 + 28432042 28432119 MADE1 96 + 0 93 197862 32 2 18 4 0 1 4 1 0 34 chain 76892 chr7 159138663 + 28441054 28441931 L1PA5 6144 - 20 898 45032 136 1 2 209 0 1 482 1 0 48 chain 52608 chr7 159138663 + 28441936 28442531 L1PA5 6144 + 4628 5221 57233 102 2 0 491 chain 9874 chr7 159138663 + 28480617 28480739 MER121 330 + 82 204 161213 122 chain 35488 chr7 159138663 + 28487551 28487983 MLT2A1 477 + 0 477 75572 142 0 1 26 0 4 207 8 48 49 chain 77993 chr7 159138663 + 28510002 28511107 L1MA2 4263 - 162 1257 44515 43 7 0 76 1 0 14 20 18 85 1 0 59 3 0 143 1 0 79 5 0 20 0 2 73 10 11 100 0 1 13 0 3 194 0 1 6 1 0 140 0 3 11 chain 4141 chr7 159138663 + 28567076 28567133 MER5A 189 - 131 189 205348 32 1 2 24 chain 60030 chr7 159138663 + 28629629 28630290 L1PA5 6144 + 5467 6128 52808 661 chain 24531 chr7 159138663 + 28637665 28637999 THE1A 353 + 0 341 107372 106 5 4 92 1 0 32 8 7 7 0 10 83 chain 9338 chr7 159138663 + 28646547 28646785 L1MA5A 2387 - 12 201 163867 16 2 0 19 1 0 10 2 1 12 36 21 66 34 7 8 3 0 29 chain 10487 chr7 159138663 + 28737617 28737751 MER121 330 - 126 259 158300 117 3 2 14 chain 25208 chr7 159138663 + 28775789 28776080 AluSp 311 - 15 306 103695 291 chain 38067 chr7 159138663 + 28783466 28783868 L1HS 6032 - 0 402 72034 402 chain 42525 chr7 159138663 + 28865577 28866115 MER41A 554 + 0 547 65988 122 6 9 338 7 12 18 7 8 40 chain 118984 chr7 159138663 + 28877844 28879148 SVA_D 2077 + 70 2068 31422 485 0 40 90 0 429 65 0 225 664 chain 31515 chr7 159138663 + 28898141 28898525 MLT2A1 477 - 94 477 81624 178 0 1 24 0 1 9 4 1 169 chain 54361 chr7 159138663 + 28970626 28971350 L1PA8 5853 - 38 772 56125 51 6 5 55 13 11 14 2 1 68 2 0 46 1 0 386 11 28 69 chain 3795 chr7 159138663 + 28984100 28984143 U6 107 - 53 96 210453 43 chain 9464 chr7 159138663 + 28991123 28991407 L1PREC2 3366 + 2756 3006 163259 50 1 0 5 12 15 24 77 60 11 3 1 30 3 0 11 24 10 33 chain 4271 chr7 159138663 + 29045795 29045862 MER63A 208 + 86 154 203615 19 7 8 41 chain 12454 chr7 159138663 + 29104320 29104461 L1PA4 6152 - 59 200 150445 141 chain 6641 chr7 159138663 + 29104465 29104536 L1PA4 6152 + 6080 6151 180154 71 chain 3307 chr7 159138663 + 29113690 29113732 MIRb 242 - 109 152 218822 9 0 1 33 chain 3911 chr7 159138663 + 29129779 29129842 MER66B 489 + 411 474 208698 29 0 1 5 6 5 23 chain 24759 chr7 159138663 + 29140934 29141222 AluY 311 + 0 294 106112 116 0 5 11 0 1 161 chain 3995 chr7 159138663 + 29169003 29169048 MLT1C 463 + 54 99 207456 45 chain 2862 chr7 159138663 + 29177414 29177446 MLT1F2 592 + 560 592 227656 32 chain 26170 chr7 159138663 + 29194447 29194800 THE1B 368 - 1 368 99324 74 7 6 92 3 0 24 1 0 50 3 7 59 0 15 40 chain 25354 chr7 159138663 + 29210297 29210656 THE1B 368 - 0 368 102927 75 1 0 21 3 0 95 1 0 7 9 8 97 6 21 44 chain 25723 chr7 159138663 + 29215523 29215831 AluY 311 + 3 302 101200 129 0 1 162 10 0 7 chain 55000 chr7 159138663 + 29257970 29258576 L1PA4 6152 + 5542 6148 55703 606 chain 10478 chr7 159138663 + 29267944 29268093 Tigger3a 397 + 161 333 158352 97 13 36 39 chain 29268 chr7 159138663 + 29273441 29273748 AluYa5 310 - 3 310 87696 307 chain 30114 chr7 159138663 + 29292194 29292510 AluYb8 318 - 2 318 84439 316 chain 3702 chr7 159138663 + 29294443 29294482 LTR67B 553 - 454 493 211916 39 chain 124701 chr7 159138663 + 29302664 29304445 SVA_B 1603 + 41 1603 29475 445 116 0 186 0 40 116 42 0 23 59 31 25 0 1 26 34 0 6 3 1 8 0 1 26 0 1 4 40 1 516 0 2 70 4 5 19 4 0 9 chain 2174 chr7 159138663 + 29303533 29303569 SVA_B 1603 + 916 952 142906 36 chain 2053 chr7 159138663 + 29303702 29303736 SVA_B 1603 + 1016 1050 142906 34 chain 1956 chr7 159138663 + 29303783 29303823 SVA_B 1603 + 738 778 174269 40 chain 24460 chr7 159138663 + 29363331 29363651 AluY 311 + 0 295 107752 127 7 1 153 19 0 14 chain 4073 chr7 159138663 + 29416130 29416180 MER5A 189 + 116 166 206285 50 chain 23625 chr7 159138663 + 29440607 29440897 AluY 311 + 0 296 112436 30 1 6 96 0 1 163 chain 28962 chr7 159138663 + 29482546 29482855 AluYb8 318 - 9 318 89171 309 chain 4898 chr7 159138663 + 29485773 29485896 L1PB1 5432 + 5312 5430 196284 14 26 27 17 1 0 22 1 0 12 1 0 14 2 0 8 1 0 4 chain 22844 chr7 159138663 + 29490391 29490684 AluSg7 307 - 12 307 116375 27 11 12 130 0 1 125 chain 14341 chr7 159138663 + 29502390 29502546 L1PA4 6152 - 8 164 143415 156 chain 16100 chr7 159138663 + 29542377 29542608 L1PA8 5853 - 16 243 138061 76 24 22 49 1 0 11 1 0 69 chain 4798 chr7 159138663 + 29543892 29543979 L1MA3 4352 + 4271 4351 197375 11 1 0 4 1 0 31 1 0 11 6 2 21 chain 26062 chr7 159138663 + 29549190 29549486 AluY 311 + 12 308 99781 296 chain 21171 chr7 159138663 + 29560378 29560656 L1MA1 4479 + 2918 3191 123303 43 1 0 24 6 4 172 2 0 30 chain 11683 chr7 159138663 + 29567631 29567847 MSTA 426 - 21 256 153548 88 0 12 6 1 9 41 48 47 32 chain 498413 chr7 159138663 + 29567859 29574161 L1PA6 6164 + 0 6148 6932 64 2 3 34 0 3 361 1 0 145 1 4 27 0 242 961 418 0 337 0 1 259 0 3 94 14 14 87 1 0 366 2 0 179 5 7 1195 0 1 265 8 13 351 0 1 254 0 1 40 0 4 660 1 2 13 1 2 4 1 0 151 chain 21072 chr7 159138663 + 29569487 29569722 L1PA3long 6157 - 0 235 123651 235 chain 186591 chr7 159138663 + 29582502 29585325 L1MA2 4263 + 1363 4111 20369 92 8 9 70 9 5 34 11 16 47 35 9 202 0 3 27 18 18 58 3 10 12 3 0 82 4 5 172 0 5 6 20 4 92 15 20 90 2 3 77 1 2 23 0 4 84 4 1 150 3 11 100 4 9 58 5 1 152 58 18 285 10 8 99 0 11 17 25 4 16 5 2 76 1 0 147 4 1 138 1 0 8 11 9 43 7 12 38 13 6 41 1 0 6 chain 25686 chr7 159138663 + 29602382 29602687 AluY 311 + 0 303 101348 41 4 0 61 0 1 23 0 1 176 chain 117970 chr7 159138663 + 29616360 29617956 THE1D-int 1627 + 0 1621 31815 76 4 0 93 0 1 474 1 2 116 0 15 57 73 85 268 6 4 4 1 0 122 0 3 301 chain 558621 chr7 159138663 + 29619552 29625579 L1PA2 6032 + 2 6032 441 276 0 1 888 1 3 4862 chain 13242 chr7 159138663 + 29641650 29641804 L1PA7 6471 - 1 155 147314 154 chain 46120 chr7 159138663 + 29659127 29659680 MER41A 554 - 0 552 61926 500 1 0 52 chain 8222 chr7 159138663 + 29683843 29684735 HERVS71-int 4705 - 3986 4648 169827 16 1 0 4 1 0 19 1 0 4 6 3 10 117 80 15 452 304 16 2 0 6 2 0 22 0 3 9 11 1 7 1 0 10 2 0 11 1 0 11 8 4 4 1 0 9 3 2 26 3 1 4 1 0 13 26 17 17 4 0 3 2 0 11 chain 50001 chr7 159138663 + 29698684 29699248 L1PA5 6144 - 0 563 59015 18 1 0 545 chain 133828 chr7 159138663 + 29739197 29740677 L1PA3long 6157 - 0 1495 27253 20 1 0 436 0 17 508 1 0 514 chain 66017 chr7 159138663 + 29745373 29746089 L1PA3long 6157 + 5441 6157 50089 716 chain 6826 chr7 159138663 + 29771101 29771232 MER1B 344 - 0 133 178746 48 41 43 42 chain 21512 chr7 159138663 + 29804639 29804887 L1PA4 6152 + 5905 6152 122092 242 1 0 5 chain 84653 chr7 159138663 + 29806186 29807460 L1PREC2 3366 + 1816 3036 41656 332 0 1 97 0 1 12 0 4 137 5 4 262 10 8 70 14 12 14 21 5 31 1 0 44 7 3 14 29 21 12 2 0 5 4 1 14 4 2 29 4 1 10 23 9 35 6 4 26 chain 29331 chr7 159138663 + 29824607 29825005 LTR7B 505 + 0 503 87389 105 0 10 69 1 96 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 280537 chr7 159138663 + 29825007 29828488 HERVH-int 3825 + 0 3825 14616 534 5 0 36 2 1 8 2 1 12 22 91 14 1 0 81 6 5 41 0 4 114 0 1 190 0 17 138 0 3 44 9 14 336 4 31 299 0 10 418 6 5 579 0 2 41 9 11 38 0 210 262 7 9 182 0 2 41 chain 28655 chr7 159138663 + 29831743 29832141 LTR7B 505 + 0 503 90504 105 0 10 69 1 96 38 1 2 45 1 0 22 1 2 52 14 13 49 chain 41449 chr7 159138663 + 29834300 29834811 MER41A 554 - 8 554 67348 118 0 1 237 10 43 54 0 1 92 chain 5045 chr7 159138663 + 29865941 29866028 MER5A1 166 + 52 130 194682 32 20 11 35 chain 7271 chr7 159138663 + 29875077 29875210 MER20 218 - 59 195 175643 72 32 36 17 1 0 11 chain 6031 chr7 159138663 + 29903161 29903250 L1MD 993 - 425 512 184966 55 5 3 29 chain 4684 chr7 159138663 + 29933570 29933691 MER58A 224 - 77 196 198705 17 17 14 10 8 12 7 4 0 42 4 5 12 chain 8486 chr7 159138663 + 29952142 29952251 U13 108 + 0 108 168375 67 1 0 41 chain 3664 chr7 159138663 + 29967858 29967920 MER5A1 166 + 65 127 212514 22 7 8 17 1 0 15 chain 45355 chr7 159138663 + 29978031 29978544 MER9a3 513 + 0 513 62651 513 chain 70103 chr7 159138663 + 30000681 30001440 SVA_F 1814 - 0 921 48350 600 0 98 106 0 64 53 chain 16147 chr7 159138663 + 30022905 30023081 L1PA2 6032 + 5856 6032 137907 176 chain 3338 chr7 159138663 + 30029901 30029936 MIRb 242 - 139 174 218259 35 chain 5703 chr7 159138663 + 30037199 30037276 MER20 218 + 0 78 188078 28 2 3 47 chain 67557 chr7 159138663 + 30039451 30040266 THE1A-int 1579 - 753 1579 49415 26 5 6 299 1 8 47 0 2 262 0 1 175 chain 10038 chr7 159138663 + 30050967 30051121 Tigger3 1187 + 743 906 160392 12 1 0 43 1 0 46 1 9 29 4 7 17 chain 17350 chr7 159138663 + 30063255 30063547 THE1B 368 - 58 349 134661 7 2 0 63 1 0 10 7 6 10 32 40 5 2 0 38 3 0 112 chain 4364 chr7 159138663 + 30067482 30067565 MER5A1 166 - 41 125 202406 7 1 0 19 4 5 14 4 5 34 chain 17899 chr7 159138663 + 30099517 30099749 AluSc5 308 + 0 277 133104 96 11 56 125 chain 390121 chr7 159138663 + 30134131 30138562 L1PA4 6152 - 1 6133 10454 104 12 0 528 0 1 344 0 1 802 0 1 282 0 1699 125 0 2 234 7 6 785 6 7 770 6 0 245 0 1 73 0 14 108 chain 15010 chr7 159138663 + 30159819 30160233 MER57B2 428 - 0 428 141292 14 1 0 36 100 121 91 62 44 12 3 0 34 19 34 42 chain 24856 chr7 159138663 + 30166213 30166572 THE1B 368 - 0 368 105590 125 17 29 12 16 14 19 1 0 169 chain 7615 chr7 159138663 + 30193653 30193774 LTR32 486 - 28 187 173446 69 8 10 22 2 37 4 0 1 16 chain 109014 chr7 159138663 + 30226385 30227930 THE1C-int 1605 - 61 1587 34436 147 122 28 346 0 2 112 0 1 149 0 9 83 8 0 8 1 9 48 1 0 138 17 24 287 0 57 78 chain 22864 chr7 159138663 + 30227951 30228329 THE1C 375 - 2 375 116264 22 2 1 236 21 22 21 43 40 18 2 0 13 chain 22546 chr7 159138663 + 30238434 30238751 MER83B 357 - 16 354 117820 191 12 21 59 0 17 36 5 0 14 chain 10066 chr7 159138663 + 30268489 30268674 L1PA16 3655 + 3461 3619 160246 116 3 0 12 26 7 7 5 0 16 chain 120161 chr7 159138663 + 30274507 30275851 L1PA4 6152 - 9 1353 31005 1344 chain 4973 chr7 159138663 + 30285091 30285491 MER52D 1964 - 23 804 195442 49 260 661 11 23 17 16 15 1 26 chain 25567 chr7 159138663 + 30304933 30305346 L1PB1 5432 - 255 646 101890 9 2 0 8 15 4 10 1 0 12 1 0 19 18 12 184 0 1 5 1 0 115 2 1 11 chain 353795 chr7 159138663 + 30377895 30382217 L1PA7 6471 - 1 4383 11509 12 1 6 137 3 0 206 1 0 41 0 1 251 0 4 191 1 0 18 10 14 4 0 1 348 5 9 440 0 1 9 0 3 96 1 13 108 0 1 234 0 3 76 7 8 55 0 6 172 3 0 217 0 1 205 4 13 69 16 13 6 1 0 145 1 0 168 0 17 321 0 2 26 2 0 158 6 0 469 0 6 78 chain 151374 chr7 159138663 + 30420302 30422132 L1PA7 6471 - 1 1876 24417 447 0 9 35 1 0 214 1 0 60 3 2 76 7 6 55 0 1 42 0 1 62 0 1 109 0 1 246 1 2 301 0 27 96 0 8 74 chain 10972 chr7 159138663 + 30423668 30423806 MER107 203 + 0 140 156312 29 6 8 103 chain 555610 chr7 159138663 + 30454092 30460119 L1PA2 6032 - 0 6029 761 13 0 1 1652 0 2 1792 2 0 1663 0 1 905 chain 45578 chr7 159138663 + 30476429 30477005 L1PA8 5853 + 5283 5853 62434 281 1 0 44 2 0 71 1 0 61 2 1 19 2 1 92 chain 568816 chr7 159138663 + 30478858 30484890 L1HS 6032 + 0 6032 6 6032 chain 205798 chr7 159138663 + 30520056 30522872 HERVH-int 3825 + 757 3825 18803 6 0 2 16 0 1 352 15 19 18 1 4 51 15 0 145 0 32 28 9 0 127 5 11 50 1 0 4 0 1 361 4 0 43 0 14 44 4 9 522 1 0 185 11 0 214 1 0 3 2 0 9 0 2 213 18 17 38 2 0 55 61 291 49 2 1 131 chain 33270 chr7 159138663 + 30524926 30525360 MER4A1 472 - 0 472 78770 23 0 1 196 0 1 6 6 29 30 1 2 114 0 11 54 0 1 4 chain 14267 chr7 159138663 + 30541775 30541978 MER30B 195 + 5 195 143663 89 11 1 54 3 0 46 chain 57658 chr7 159138663 + 30546220 30547478 LTR12D 1347 - 0 946 54155 14 0 1 250 1 0 31 3 2 27 299 0 12 49 7 227 0 24 41 162 18 70 0 150 72 chain 72176 chr7 159138663 + 30548649 30549510 MER11D 897 - 0 897 47392 114 1 0 166 3 26 37 0 14 540 chain 33934 chr7 159138663 + 30576401 30576877 HERVK14-int 1672 + 13 483 77724 17 1 0 11 5 0 49 1 0 38 1 0 172 7 6 15 10 13 149 chain 524069 chr7 159138663 + 30577129 30583239 L1PA5 6144 + 0 6135 4759 120 0 14 22 0 12 312 0 1 362 0 3 6 3 0 317 9 0 248 0 3 6 5 1 802 0 6 78 0 1 20 1 3 39 0 1 389 2 0 58 0 1 351 1 0 496 1 0 258 1 2 409 0 4 931 1 0 18 1 0 227 3 0 377 0 1 236 chain 7769 chr7 159138663 + 30586771 30586866 THE1B 368 + 274 368 172485 19 1 0 75 chain 19383 chr7 159138663 + 30602275 30602618 THE1D 372 - 0 336 128997 121 29 19 38 26 28 28 4 0 6 5 9 81 0 1 5 chain 29277 chr7 159138663 + 30605592 30605971 PABL_B 668 - 10 440 87660 242 1 8 121 1 45 14 chain 57382 chr7 159138663 + 30609667 30610503 LTR12 884 + 0 869 54295 25 1 0 216 103 0 99 3 4 33 2 0 227 0 4 72 0 134 55 chain 2606 chr7 159138663 + 30609909 30609962 LTR12 884 + 109 162 153024 53 chain 4333 chr7 159138663 + 30609962 30610012 LTR12 884 + 55 109 144424 43 0 4 7 chain 17642 chr7 159138663 + 30619545 30619772 AluSg7 307 + 74 298 133870 57 0 1 142 9 5 19 chain 62277 chr7 159138663 + 30620132 30621043 LTR12 884 - 0 884 51766 156 0 103 247 2 0 42 0 2 132 131 1 201 chain 40310 chr7 159138663 + 30623903 30624577 MER4A1_ 611 + 0 609 68868 69 3 5 47 1 2 220 4 17 15 76 0 134 14 6 16 22 24 42 0 1 11 chain 26895 chr7 159138663 + 30627210 30627564 THE1B 368 - 0 368 96643 75 1 0 99 0 2 20 8 6 101 0 9 6 0 6 44 chain 29071 chr7 159138663 + 30630192 30630495 AluYb8 318 + 0 303 88679 303 chain 37985 chr7 159138663 + 30646885 30647318 L1PA6 6164 + 5727 6160 72154 433 chain 4132 chr7 159138663 + 30675036 30675086 MADE1 96 - 0 50 205459 50 chain 556059 chr7 159138663 + 30676424 30682446 L1PA2 6032 - 0 6029 716 175 0 2 1637 1 0 1073 0 2 2575 0 4 308 1 0 183 0 1 69 chain 4484 chr7 159138663 + 30724758 30724826 LTR16E1 515 + 13 80 200983 12 0 3 8 4 0 44 chain 12165 chr7 159138663 + 30757733 30757867 LTR5B 1012 + 0 134 151555 134 chain 88317 chr7 159138663 + 30758199 30759205 LTR5B 1012 - 0 1012 40255 148 2 8 856 chain 45167 chr7 159138663 + 30767753 30768318 MER41A 554 + 0 554 62856 524 11 0 30 chain 28878 chr7 159138663 + 30776249 30776619 THE1C 375 + 0 374 89551 79 0 1 56 1 5 209 1 0 24 chain 6300 chr7 159138663 + 30788914 30789124 MER20 218 + 1 216 182798 14 0 1 4 1 0 53 114 119 24 chain 23471 chr7 159138663 + 30789749 30790057 THE1B 368 - 61 368 113269 135 11 10 162 chain 27123 chr7 159138663 + 30796018 30796313 AluYg6 310 - 7 302 95859 295 chain 4377 chr7 159138663 + 30796660 30796709 MER53 195 + 146 195 202227 49 chain 13425 chr7 159138663 + 30799935 30800257 L1MB3 1562 - 111 410 146598 13 44 17 15 27 29 26 1 0 48 0 1 9 9 11 80 3 2 14 16 17 17 chain 3553 chr7 159138663 + 30803610 30803652 MLT1J2 417 - 119 161 214506 42 chain 12093 chr7 159138663 + 30823068 30823205 MER85 139 + 0 137 151823 137 chain 13483 chr7 159138663 + 30831405 30831610 MER30 238 - 0 238 146404 80 0 6 23 4 0 8 3 27 63 8 15 16 chain 4035 chr7 159138663 + 30833556 30833600 MIR 256 - 109 153 206842 44 chain 37538 chr7 159138663 + 30847142 30847610 LTR2 463 + 0 463 72768 210 27 22 231 chain 86908 chr7 159138663 + 30849402 30850804 Harlequin-int 5206 + 125 1207 40822 7 2 0 94 312 0 80 0 2 68 7 1 106 1 0 31 14 13 155 1 0 397 0 1 127 chain 9503 chr7 159138663 + 30850896 30851116 HERVE_a-int 7009 + 6796 6997 163061 20 1 0 30 11 8 13 1 0 25 2 0 33 51 41 25 2 0 6 chain 40476 chr7 159138663 + 30851135 30851597 LTR2 463 + 1 463 68625 462 chain 3741 chr7 159138663 + 30853838 30853892 Arthur1A 176 - 48 168 211319 9 0 2 5 0 64 40 chain 29350 chr7 159138663 + 30859508 30859816 AluYa5 310 - 2 310 87289 308 chain 27785 chr7 159138663 + 30869995 30870367 THE1C 375 - 0 375 93753 25 1 0 153 8 7 8 0 1 40 8 12 129 chain 20229 chr7 159138663 + 30872796 30873166 THE1B 368 - 0 368 126441 77 3 0 105 15 14 8 1 0 33 58 58 31 0 5 24 2 0 13 chain 119808 chr7 159138663 + 30873171 30874730 THE1B-int 1605 - 5 1605 31118 261 1 2 529 0 1 308 16 13 19 10 35 138 23 25 54 0 15 200 chain 20802 chr7 159138663 + 30998679 30998939 AluY 311 + 43 305 124590 64 1 2 23 11 12 161 chain 9309 chr7 159138663 + 31028916 31029035 MER82 654 - 428 547 164019 119 chain 14858 chr7 159138663 + 31033167 31033687 LTR12D 1347 - 266 758 141767 27 6 5 20 111 0 9 83 244 41 1 0 23 95 19 104 chain 5678 chr7 159138663 + 31033488 31033569 LTR12D 1347 - 827 909 155365 37 1 2 43 chain 25781 chr7 159138663 + 31038430 31038797 THE1C 375 - 0 374 100962 78 20 22 55 0 1 13 0 3 16 5 6 180 chain 3341 chr7 159138663 + 31065412 31065453 MIR 256 + 88 129 218204 41 chain 54547 chr7 159138663 + 31085227 31085857 L1PA6 6164 + 5525 6162 55997 6 0 7 280 0 1 339 1 0 4 chain 5632 chr7 159138663 + 31110377 31110477 MER5A 189 - 46 147 188747 25 0 1 8 1 0 23 16 17 27 chain 33855 chr7 159138663 + 31166001 31166391 L1PA5 6144 - 18 407 77848 129 1 0 260 chain 90997 chr7 159138663 + 31186863 31188072 L1PA10 4194 + 3006 4161 39296 117 2 0 10 4 7 410 58 1 358 11 17 190 3 0 34 1 0 11 chain 3429 chr7 159138663 + 31187428 31187464 L1PA10 4194 + 3511 3547 216595 36 chain 99143 chr7 159138663 + 31192685 31193859 SVA_A 1864 + 15 1861 36990 301 0 3 209 7 677 172 1 0 484 chain 9121 chr7 159138663 + 31193907 31194013 THE1-int 844 - 143 249 164966 106 chain 96725 chr7 159138663 + 31196514 31198283 L1PA11 4918 - 289 1726 37638 18 48 33 11 2 0 12 5 4 12 13 9 10 8 3 9 4 0 19 1 0 17 2 0 56 12 12 9 1 0 60 7 4 15 1 5 692 7 6 73 1 0 5 0 1 52 8 9 182 303 0 15 4 5 35 0 4 40 chain 2442 chr7 159138663 + 31205304 31205343 L1MC4 1079 - 1034 1072 233796 20 3 2 16 chain 258046 chr7 159138663 + 31220445 31224560 L1PA15 4387 - 33 3726 15805 21 8 3 60 6 3 50 1 0 8 96 56 23 5 9 80 1 2 56 0 1 5 24 8 37 1 0 19 1 0 26 2 0 58 4 0 16 2 0 166 0 1 57 1 0 29 1 0 21 0 1 376 2 1 277 19 20 132 0 2 26 13 5 132 2 0 112 1 0 4 0 1 234 6 0 116 11 13 24 5 4 133 323 0 55 0 5 67 2 0 371 1 2 168 1 0 145 17 18 86 75 59 82 1 0 12 2 1 33 2 0 119 1 0 42 chain 35120 chr7 159138663 + 31237315 31237815 MER1A 529 - 7 501 76029 20 50 43 125 3 4 302 chain 5581 chr7 159138663 + 31249152 31249222 MER44B 551 - 35 104 189274 60 1 0 9 chain 24499 chr7 159138663 + 31265782 31266120 THE1A 353 + 0 337 107545 109 2 1 92 1 0 108 6 7 20 chain 126707 chr7 159138663 + 31266136 31267703 THE1A-int 1579 + 0 1566 28882 36 0 1 268 1 2 50 7 0 118 0 1 38 0 1 93 4 7 49 1 0 902 chain 26331 chr7 159138663 + 31267718 31268068 THE1A 353 + 2 353 98692 107 12 11 71 0 3 8 1 0 151 chain 16897 chr7 159138663 + 31269543 31269901 L1PB1 5432 - 19 1078 135852 9 1 0 13 1 0 21 1 0 20 28 23 14 3 0 5 24 16 11 1 0 44 9 8 10 1 0 52 2 0 6 3 728 79 chain 10242 chr7 159138663 + 31279764 31279888 MER2 342 + 123 247 159408 124 chain 4373 chr7 159138663 + 31290700 31290753 MER53 195 + 34 87 202282 53 chain 28239 chr7 159138663 + 31309985 31310320 L1PA7 6471 - 6 340 92159 287 1 0 47 chain 223443 chr7 159138663 + 31319988 31322450 L1PA3long 6157 + 3682 6144 17690 106 1 0 1602 0 1 753 chain 4304 chr7 159138663 + 31335412 31335567 MER5A 189 + 0 159 203163 23 82 85 38 1 2 11 chain 5617 chr7 159138663 + 31356618 31356698 MADE1 96 - 0 96 188910 47 1 17 32 chain 51014 chr7 159138663 + 31364065 31364664 L1PA5 6144 + 5552 6144 58295 446 6 0 89 2 1 56 chain 160178 chr7 159138663 + 31367169 31369067 L1PA7 6471 - 2 1906 23315 11 1 2 101 0 1 350 4 0 387 0 3 635 1 0 186 0 1 4 0 1 115 0 4 103 chain 5026 chr7 159138663 + 31393868 31393927 MER45A 178 - 47 106 194874 59 chain 12342 chr7 159138663 + 31425893 31426237 L1PB1 5432 - 10 318 150853 21 1 0 8 1 0 23 1 0 23 3 1 14 9 6 18 45 31 35 6 5 16 2 1 13 1 0 26 18 13 9 5 1 14 3 2 4 1 0 24 chain 36049 chr7 159138663 + 31463095 31463684 L1PB1 5432 - 12 585 74837 16 1 0 13 1 0 21 1 0 17 11 9 12 1 0 4 3 1 30 14 1 16 1 0 44 5 6 9 2 1 53 2 0 9 6 2 9 1 0 9 1 0 16 5 19 256 chain 9432 chr7 159138663 + 31467823 31467938 LTR32 486 - 37 188 163396 98 0 36 17 chain 305882 chr7 159138663 + 31508129 31511588 HERVH-int 3825 - 0 3825 13173 529 0 1 794 0 5 330 0 3 354 0 1 1027 0 3 13 0 2 6 0 1 55 0 351 17 1 0 333 chain 4932 chr7 159138663 + 31523696 31523779 L1PB1 5432 + 4939 5023 195904 14 13 14 56 chain 133907 chr7 159138663 + 31523820 31525253 L1HS 6032 - 0 1433 27236 1433 chain 21293 chr7 159138663 + 31535217 31535513 THE1C 375 - 48 346 122887 140 0 1 46 6 6 70 4 5 30 chain 538326 chr7 159138663 + 31540820 31546840 L1PA3long 6157 - 1 6157 3098 765 0 1 76 0 4 75 1 2 4 1 0 2137 0 1 953 0 1 1233 0 128 622 13 0 11 1 15 128 chain 8968 chr7 159138663 + 31556825 31556978 LTR12D 1347 - 571 758 165782 32 24 0 33 2 19 40 2 43 20 chain 42445 chr7 159138663 + 31580421 31581854 LTR19-int 1103 - 69 1041 66085 18 22 5 11 1 0 25 2 0 5 13 3 45 1 0 15 84 46 35 1 0 4 2 0 17 4 1 10 1 0 10 38 14 48 164 64 13 1 0 50 14 0 19 15 18 55 12 11 38 8 4 84 7 3 15 0 2 2 2 0 20 5 0 13 5 0 50 27 6 34 68 8 10 1 0 50 68 29 27 107 0 13 1 0 15 1 0 7 chain 108260 chr7 159138663 + 31625454 31626641 L1PA3long 6157 - 0 1186 34628 20 1 0 1166 chain 87682 chr7 159138663 + 31626641 31627595 L1PA3long 6157 + 4033 4987 40423 954 chain 551683 chr7 159138663 + 31659232 31665385 L1PA3long 6157 + 0 6147 1226 1190 1 4 563 1 2 503 0 2 433 2 0 574 0 2 91 0 2 725 22 6 1565 0 1 470 0 1 13 chain 19860 chr7 159138663 + 31675563 31675875 THE1C 375 - 56 375 127621 77 58 69 60 4 0 113 chain 112404 chr7 159138663 + 31676344 31677610 L1PA4 6152 - 1 1260 33560 140 7 0 193 1 0 523 0 1 402 chain 14155 chr7 159138663 + 31712396 31712763 THE1D 372 + 0 372 144026 62 179 184 126 chain 2630 chr7 159138663 + 31724137 31724323 L1MD1 2063 + 1591 1774 231269 22 12 11 17 3 0 5 109 110 18 chain 26256 chr7 159138663 + 31752256 31752603 THE1B 368 - 0 368 98994 49 5 13 114 3 1 19 1 0 113 0 15 20 0 1 23 chain 112520 chr7 159138663 + 31752614 31754163 THE1B-int 1605 - 12 1605 33529 272 1 0 6 0 1 115 0 1 17 4 5 4 0 1 223 0 1 170 0 1 7 4 3 89 46 47 108 4 9 6 0 5 34 2 5 6 0 25 221 0 5 6 21 16 28 0 1 155 chain 20403 chr7 159138663 + 31754163 31754463 THE1B 368 - 0 309 125885 49 5 13 111 5 7 19 9 8 102 chain 3950 chr7 159138663 + 31754463 31754507 THE1B 368 - 324 368 208132 44 chain 26103 chr7 159138663 + 31759534 31759812 AluYb8 318 + 40 317 99608 83 1 0 194 chain 4341 chr7 159138663 + 31795330 31795383 L1MC3 1789 + 1334 1386 202701 43 1 0 9 chain 65759 chr7 159138663 + 31797166 31797908 L1PA5 6144 + 5389 6132 50211 609 5 6 128 chain 14096 chr7 159138663 + 31816601 31816757 L1PA4 6152 + 5987 6143 144234 156 chain 51405 chr7 159138663 + 31843035 31843621 L1PA4 6152 - 16 609 58030 132 1 8 453 chain 27672 chr7 159138663 + 31853286 31853888 L1PB1 5432 - 5 499 94139 5 2 0 18 1 0 8 6 5 21 1 0 24 17 14 5 2 0 19 16 6 6 2 0 15 1 0 45 5 4 11 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 1 0 20 89 11 109 0 3 58 chain 111286 chr7 159138663 + 31872955 31874480 THE1B-int 1605 + 0 1605 33863 43 4 5 136 0 3 36 0 1 202 0 25 119 7 21 22 3 37 128 1 2 337 62 2 20 0 60 71 1 0 78 0 1 250 0 1 5 chain 15167 chr7 159138663 + 31885101 31885288 L1PA7 6471 + 6269 6467 140866 135 0 11 52 chain 25805 chr7 159138663 + 31945337 31945736 THE1C 375 + 0 375 100848 124 3 0 11 0 4 64 52 28 118 1 0 26 chain 461724 chr7 159138663 + 31966845 31972840 L1PA8 5853 + 117 5849 8342 13 0 1 108 33 33 29 8 12 279 4 8 7 0 6 436 0 1 161 0 7 367 2 0 77 0 1 363 3 0 455 0 4 87 1 0 175 5 19 61 0 1 101 0 4 26 0 5 119 1 0 66 0 5 65 1 0 264 327 0 105 1 0 884 0 22 511 7 5 74 1 4 476 1 0 46 2 0 68 20 18 43 3 2 19 1 0 89 chain 50848 chr7 159138663 + 31985816 31986433 LTR14B 630 + 0 616 58399 552 1 0 64 chain 3562 chr7 159138663 + 31994304 31994343 MADE1 96 + 1 40 214280 39 chain 542797 chr7 159138663 + 32003580 32009764 L1PA4 6152 + 1 6151 2376 34 8 4 98 0 1 598 1 0 304 1 0 2645 1 2 39 0 1 1050 21 0 384 10 0 990 chain 3654 chr7 159138663 + 32013324 32013376 MIR 256 - 160 211 212714 37 2 1 13 chain 6334 chr7 159138663 + 32019157 32019228 MIR 256 - 161 232 182508 71 chain 38421 chr7 159138663 + 32025040 32025488 L1PA6 6164 - 3 453 71549 150 0 1 176 0 1 122 chain 47391 chr7 159138663 + 32052916 32053499 LTR10C 591 - 0 591 60906 56 1 6 19 0 2 15 0 1 249 0 1 200 0 1 10 2 0 31 chain 20980 chr7 159138663 + 32054081 32054383 L1PA8 5853 - 1 308 123987 91 2 1 16 1 0 15 1 13 25 2 1 11 5 4 67 2 0 44 1 0 19 chain 15340 chr7 159138663 + 32054474 32054831 THE1C 375 + 0 336 140368 19 2 0 25 0 9 8 17 0 24 0 1 38 0 20 9 15 0 14 26 27 18 55 37 87 chain 6713 chr7 159138663 + 32082631 32082774 MER20 218 + 0 160 179589 14 24 44 19 20 17 66 chain 12100 chr7 159138663 + 32089033 32089178 MER107 203 - 58 203 151798 145 chain 13849 chr7 159138663 + 32089544 32089720 Tigger3c 601 - 81 258 145071 51 0 1 125 chain 22574 chr7 159138663 + 32117192 32117462 AluSg7 307 - 19 289 117699 26 1 0 130 0 1 113 chain 555048 chr7 159138663 + 32121505 32127623 L1PA3long 6157 + 20 6157 820 617 0 12 652 0 2 3648 0 1 358 0 4 843 chain 4639 chr7 159138663 + 32141391 32141448 MSTB-int 1649 + 0 57 199207 57 chain 26524 chr7 159138663 + 32153432 32153768 L1PA8 5853 + 4034 4372 97956 148 1 2 160 0 1 27 chain 42082 chr7 159138663 + 32153774 32154287 L1PA8 5853 + 4385 4902 66516 294 3 7 216 chain 50896 chr7 159138663 + 32154287 32154950 L1PA8 5853 + 4906 5564 58372 103 2 0 48 2 1 26 0 2 370 4 1 64 1 0 43 chain 3599 chr7 159138663 + 32154952 32154995 L1PA8 5853 + 5565 5608 213654 43 chain 17151 chr7 159138663 + 32154997 32155245 L1PA8 5853 + 5608 5853 135162 71 1 0 65 1 0 16 7 6 87 chain 468082 chr7 159138663 + 32159194 32165440 L1PA8A 6298 + 34 6290 8107 6 1 0 13 7 6 11 18 7 23 4 1 18 19 10 14 6 5 9 2 1 12 1 25 9 2 0 4 1 0 13 25 21 10 13 8 6 2 0 30 9 8 26 8 0 77 2 0 14 1 0 11 8 6 58 49 48 236 1 0 21 0 1 4 5 0 47 6 18 20 6 8 148 6 7 68 6 20 6 0 1 81 1 0 22 0 1 8 2 0 37 9 4 7 0 5 508 0 1 172 12 8 29 0 1 57 3 15 253 1 0 31 1 3 366 0 4 207 0 4 424 0 2 109 0 1 283 20 21 109 0 1 23 4 10 294 0 1 5 1 0 143 1 2 272 0 2 343 0 1 117 22 0 104 0 3 127 0 1 118 2 5 796 chain 6529 chr7 159138663 + 32174167 32174240 L1PA8 5853 + 5491 5564 181012 73 chain 20822 chr7 159138663 + 32174241 32174529 L1PA8 5853 + 5564 5846 124535 46 2 0 69 1 0 9 1 0 52 2 1 19 4 3 83 chain 23383 chr7 159138663 + 32205014 32205367 THE1D 372 - 15 372 113746 146 43 45 62 1 2 47 0 1 54 chain 9663 chr7 159138663 + 32211853 32211962 L1PA8A 6298 + 5380 5489 162282 109 chain 62276 chr7 159138663 + 32211964 32213080 L1PA8A 6298 + 5490 6288 51767 182 321 6 120 2 0 208 3 1 182 3 4 95 chain 329094 chr7 159138663 + 32220723 32224409 L1PA4 6152 + 2450 6143 12234 340 1 0 825 0 1 1688 0 4 378 2 0 161 0 1 159 1 2 86 0 3 45 chain 29875 chr7 159138663 + 32225695 32226013 AluYb8 318 - 0 318 85185 318 chain 5833 chr7 159138663 + 32227462 32227530 MER33 330 - 230 298 186837 68 chain 35827 chr7 159138663 + 32321327 32321777 L1PA6 6164 + 5697 6162 75097 134 0 1 78 0 12 81 14 16 143 chain 540389 chr7 159138663 + 32347356 32353526 L1PA4 6152 + 1 6151 2759 87 0 1 310 3 0 181 1 0 256 17 0 1338 1 0 451 1 0 891 1 0 1307 9 11 357 0 1 373 0 1 410 21 20 155 chain 9183 chr7 159138663 + 32380233 32380624 L1MC1 2226 + 1854 2198 164641 35 5 0 28 1 0 38 26 23 14 2 0 18 159 125 12 21 20 17 1 0 14 chain 4235 chr7 159138663 + 32385834 32385882 MER45C 884 + 97 145 204107 48 chain 272804 chr7 159138663 + 32390206 32393113 L1HS 6032 - 0 2907 15028 2907 chain 63525 chr7 159138663 + 32409354 32410400 L1PA6 6164 + 5416 6156 51236 382 0 1 33 307 0 324 chain 87613 chr7 159138663 + 32426489 32427462 SVA_E 1901 - 2 1095 40528 386 0 1 146 0 127 280 2 1 31 4 0 89 1 0 21 1 0 5 1 0 6 chain 5279 chr7 159138663 + 32438969 32439030 MLT1B 390 - 38 99 192215 61 chain 5282 chr7 159138663 + 32471163 32471227 MER92B 628 + 0 64 192190 64 chain 28081 chr7 159138663 + 32478583 32478933 MLT2A1 477 + 0 355 92706 142 0 1 25 1 5 25 0 1 6 1 0 150 chain 3297 chr7 159138663 + 32479722 32479759 MLT1H 522 - 352 389 219034 37 chain 3347 chr7 159138663 + 32482720 32482761 LTR42 492 + 187 229 218093 9 0 1 32 chain 29127 chr7 159138663 + 32482942 32484172 L1PREC2 3366 + 2479 3242 88428 37 16 15 39 0 1 161 333 0 20 2 0 45 10 9 12 37 35 14 28 21 12 2 0 5 4 1 15 3 1 29 37 20 32 20 16 29 237 148 22 5 0 24 chain 544559 chr7 159138663 + 32504145 32510177 L1PA3long 6157 + 4 6157 2131 148 0 1 109 9 0 102 0 1 403 8 136 1196 0 1 596 1 0 1649 0 3 1803 3 0 5 chain 26762 chr7 159138663 + 32513042 32513342 AluSp 311 - 11 311 97116 300 chain 23455 chr7 159138663 + 32517971 32518292 AluYk4 311 + 8 311 113347 124 32 14 165 chain 20209 chr7 159138663 + 32536703 32536958 AluSq2 311 + 21 275 126507 5 3 0 106 0 2 141 chain 102572 chr7 159138663 + 32539204 32540582 L1PA8 5853 - 0 1361 36115 92 2 1 19 3 2 51 15 13 67 2 0 46 1 0 164 9 11 170 0 3 76 0 3 63 10 13 52 0 1 137 25 0 86 0 1 60 5 6 134 1 2 88 chain 22612 chr7 159138663 + 32544855 32545147 AluSq4 311 + 0 294 117527 131 0 1 6 17 18 138 chain 36236 chr7 159138663 + 32554045 32554545 LTR7 482 + 0 482 74573 173 51 0 74 0 31 141 12 14 49 chain 26752 chr7 159138663 + 32560430 32560775 THE1A 353 + 8 353 97156 102 1 0 169 0 1 73 chain 126516 chr7 159138663 + 32560775 32562341 THE1A-int 1579 + 0 1576 28939 169 2 1 5 0 1 104 0 2 358 0 8 84 10 7 108 1 0 33 0 3 41 2 3 649 chain 24691 chr7 159138663 + 32562341 32562679 THE1A 353 + 0 341 106494 105 16 15 200 1 5 16 chain 28951 chr7 159138663 + 32580499 32580812 AluYa5 310 - 0 310 89212 123 3 0 187 chain 205380 chr7 159138663 + 32637668 32640258 L1PA8 5853 + 2451 5068 18832 32 1 5 39 1 0 355 4 0 299 29 41 59 0 1 14 0 1 14 0 3 6 3 0 69 5 6 216 0 1 40 0 1 423 0 1 17 1 0 114 0 2 5 2 1 258 0 6 527 0 2 15 0 2 42 chain 27984 chr7 159138663 + 32640258 32640559 AluYa5 310 + 0 299 93057 123 2 0 176 chain 39382 chr7 159138663 + 32642836 32643356 LTR6B 557 - 0 557 70195 56 0 1 5 5 0 86 10 8 41 0 1 272 0 15 24 1 28 20 chain 67767 chr7 159138663 + 32643489 32644508 MER11B 1079 - 16 1072 49339 183 0 1 53 8 9 18 48 61 13 11 35 95 5 0 8 5 11 52 0 1 13 13 0 12 1 2 22 18 17 58 2 0 36 0 5 98 0 1 29 0 5 218 chain 75002 chr7 159138663 + 32663962 32664850 L1PA7 6471 + 5572 6457 46015 49 1 0 89 2 0 421 1 0 176 1 2 148 chain 11289 chr7 159138663 + 32682816 32682986 Tigger1 2417 + 2224 2417 155092 32 1 0 84 2 1 22 7 32 22 chain 13877 chr7 159138663 + 32721621 32721790 THE1D 372 + 0 170 144990 162 0 1 7 chain 541989 chr7 159138663 + 32722290 32728327 L1PA2 6032 - 1 6029 2507 13 0 1 2048 22 6 14 1 0 381 0 3 327 0 2 101 5 9 557 1 0 2313 1 0 253 chain 31070 chr7 159138663 + 32735577 32735926 L1PA4 6152 - 0 349 82394 349 chain 533117 chr7 159138663 + 32737272 32743157 L1PA2 6032 - 11 6032 3832 2273 0 120 1177 0 4 181 0 4 238 0 2 1285 0 1 20 4 11 449 5 4 94 5 4 154 chain 29130 chr7 159138663 + 32745399 32745723 AluYb8 318 - 1 318 88409 60 7 0 257 chain 552729 chr7 159138663 + 32747627 32753783 L1PA3long 6157 + 10 6153 1104 703 0 2 283 1 0 1700 1 0 560 0 4 102 0 2 711 1 0 14 22 6 1794 8 7 242 1 0 13 chain 23892 chr7 159138663 + 32774854 32775140 AluY 311 + 8 295 110944 124 1 2 161 chain 131330 chr7 159138663 + 32792760 32794408 SVA_B 1603 + 6 1603 27794 13 10 4 19 8 5 589 79 0 114 0 1 65 0 40 61 45 0 18 0 41 627 chain 7109 chr7 159138663 + 32793399 32793478 SVA_B 1603 + 520 599 130139 79 chain 43574 chr7 159138663 + 32802081 32802580 LTR2C 499 + 0 499 64713 499 chain 27638 chr7 159138663 + 32807978 32808345 THE1B 368 - 0 368 94240 10 3 2 183 2 1 130 0 5 24 2 0 13 chain 118144 chr7 159138663 + 32812421 32813862 L1PA7 6471 + 5029 6469 31754 68 1 0 286 0 1 206 0 9 22 1 0 82 0 1 150 0 1 251 10 0 20 6 5 338 chain 3447 chr7 159138663 + 32826060 32826104 MADE1 96 + 2 46 216250 44 chain 77502 chr7 159138663 + 32832489 32833367 L1PA4 6152 - 0 894 44734 6 0 5 116 0 11 756 chain 71932 chr7 159138663 + 32839946 32840903 LTR13 1007 + 0 956 47508 73 2 0 204 0 1 103 4 5 186 1 0 56 2 1 54 31 31 101 0 1 140 chain 22468 chr7 159138663 + 32843022 32843381 THE1D 372 - 12 372 118163 20 1 0 67 0 1 4 3 0 44 13 14 15 31 33 61 0 1 100 chain 99282 chr7 159138663 + 32863476 32864565 L1PA3long 6157 - 0 1091 36953 349 0 1 506 0 1 234 chain 98682 chr7 159138663 + 32864565 32865624 L1PA3long 6157 + 4003 5062 37036 1059 chain 33002 chr7 159138663 + 32872172 32872617 LTR7 482 + 0 470 79212 100 21 15 138 1 0 6 5 36 70 1 2 103 chain 280017 chr7 159138663 + 32872631 32876224 HERVH-int 3825 + 0 3825 14643 49 0 1 278 15 16 17 19 20 77 17 286 39 60 1 51 0 4 348 7 0 39 15 0 220 0 1 22 0 1 24 0 1 295 48 62 153 1 5 62 24 29 673 2 4 230 0 4 144 0 3 71 0 2 593 chain 40486 chr7 159138663 + 32878353 32878794 LTR7Y 441 - 0 441 68613 441 chain 286760 chr7 159138663 + 32879223 32882710 HERVH-int 3825 - 0 3825 14240 225 0 2 72 0 1 25 0 2 164 4 214 39 9 11 780 0 2 263 0 10 299 4 31 243 0 1 661 2 1 25 0 150 24 1 0 10 1 0 38 66 0 532 chain 40281 chr7 159138663 + 32882710 32883151 LTR7Y 441 - 0 441 68900 441 chain 25595 chr7 159138663 + 32890213 32890559 THE1B 368 - 0 368 101752 63 0 4 15 0 1 74 9 13 24 1 0 92 1 0 23 0 15 44 chain 7056 chr7 159138663 + 32894720 32894908 MER3 215 + 8 200 177058 17 69 70 21 11 14 70 chain 21481 chr7 159138663 + 32913739 32914018 AluY 311 + 10 289 122211 86 1 0 36 0 1 74 1 2 15 2 1 64 chain 20874 chr7 159138663 + 32928669 32928920 AluY 311 + 26 298 124379 105 0 2 14 0 21 114 2 0 16 chain 24958 chr7 159138663 + 32963930 32964222 AluSp 311 + 7 298 105015 173 1 0 118 chain 22641 chr7 159138663 + 32967370 32967633 AluSc5 308 - 6 270 117368 245 1 2 17 chain 24532 chr7 159138663 + 32974708 32974997 AluY 311 + 6 296 107361 126 0 1 163 chain 5565 chr7 159138663 + 32976991 32977068 LTR23 429 + 343 420 189430 33 1 0 35 0 1 8 chain 2964 chr7 159138663 + 32984430 32984468 L1M4c 1769 - 469 508 225782 23 0 1 15 chain 11608 chr7 159138663 + 32989101 32989244 LTR56 451 - 168 311 153861 143 chain 22956 chr7 159138663 + 33001735 33002011 AluSp 311 + 9 287 115821 61 0 4 58 2 0 155 chain 29547 chr7 159138663 + 33036390 33036705 AluYb9 318 - 3 318 86430 315 chain 3407 chr7 159138663 + 33061787 33061829 MADE1 96 - 54 96 216961 42 chain 27487 chr7 159138663 + 33070429 33070734 AluYf4 310 + 0 305 94692 305 chain 7782 chr7 159138663 + 33099634 33099853 AluJb 308 - 79 297 172404 18 117 116 84 chain 31678 chr7 159138663 + 33104619 33105069 LTR7 482 - 7 482 81359 83 0 1 68 6 1 28 0 31 38 0 1 74 2 1 34 15 14 49 1 0 52 chain 24905 chr7 159138663 + 33113767 33114067 AluSp 311 + 11 311 105309 300 chain 3646 chr7 159138663 + 33136369 33136414 MER66B 489 + 295 340 212877 45 chain 112779 chr7 159138663 + 33157673 33159598 L1MA2 4263 - 1527 3151 33449 29 7 5 31 0 1 13 18 16 8 0 2 72 1 5 20 0 1 147 1 10 314 3 5 87 1 0 40 0 3 153 1 0 128 2 0 19 76 0 79 2 0 8 288 47 26 0 4 351 chain 4756 chr7 159138663 + 33158788 33158842 LTR9B 643 - 82 136 197839 54 chain 5463 chr7 159138663 + 33173976 33174136 L1MB7 1623 - 490 672 190376 42 82 104 36 chain 29413 chr7 159138663 + 33198379 33198802 MER57B1 401 - 0 401 87010 103 2 0 34 22 1 30 5 6 227 chain 4354 chr7 159138663 + 33198823 33198951 MER57-int 2662 - 19 135 202540 18 9 8 25 24 18 15 4 1 10 1 0 5 1 0 16 chain 491898 chr7 159138663 + 33200739 33206613 L1PA6 6164 - 2 6149 7277 36 0 2 932 1 0 5 5 79 111 0 1 122 0 1 34 10 215 8 0 11 235 0 2 432 0 1 239 1 0 506 0 1 512 1 2 349 0 1 110 0 2 747 7 5 138 0 1 32 3 0 826 3 1 139 30 9 28 4 4 268 chain 108995 chr7 159138663 + 33208424 33209610 L1PA2 6032 - 3 1189 34443 1186 chain 131045 chr7 159138663 + 33209610 33211029 L1PA2 6032 + 3412 4831 27846 1419 chain 7522 chr7 159138663 + 33217351 33217443 5S 121 + 0 92 174026 92 chain 35335 chr7 159138663 + 33219494 33219973 LTR10A 586 + 23 533 75759 36 0 8 7 5 6 21 0 21 15 4 3 62 5 6 305 0 1 19 chain 23132 chr7 159138663 + 33219973 33220255 AluSc5 308 - 11 297 114987 100 8 12 174 chain 25008 chr7 159138663 + 33221066 33221413 MER41-int 2638 - 1829 2168 104746 33 0 2 43 0 4 33 3 1 14 16 4 205 chain 113102 chr7 159138663 + 33258404 33259733 LTR12C 1709 + 0 1709 33348 491 0 1 158 0 278 184 1 0 4 4 2 106 0 4 43 1 0 125 0 102 129 1 0 82 chain 26841 chr7 159138663 + 33267546 33267920 L1PB2 3958 - 201 564 96842 8 2 0 67 2 1 64 1 0 70 3 2 35 3 1 58 2 0 12 2 0 45 chain 5625 chr7 159138663 + 33271441 33271578 MER20 218 - 24 152 188829 34 34 32 43 4 0 6 5 2 11 chain 127220 chr7 159138663 + 33343130 33344762 SVA_A 1864 + 8 1864 28763 10 6 0 99 0 10 525 3 74 43 0 37 44 0 36 137 3 0 21 0 2 14 15 85 24 3 0 35 40 0 32 45 91 100 1 5 432 chain 2395 chr7 159138663 + 33344116 33344152 SVA_A 1864 + 763 799 74377 36 chain 47470 chr7 159138663 + 33358209 33359272 L1PB1 5432 - 5 727 60854 5 2 0 31 1 0 21 1 0 17 9 7 15 1 0 4 2 0 22 16 1 24 1 0 44 1 0 15 2 1 48 317 4 9 2 0 3 2 0 9 1 0 9 1 0 24 3 0 6 4 5 297 15 22 79 chain 23883 chr7 159138663 + 33359272 33359569 L1PB1 5432 + 4419 4713 108291 209 4 0 69 0 1 15 chain 5342 chr7 159138663 + 33373039 33373102 L1PB2 3958 - 120 183 191624 63 chain 18471 chr7 159138663 + 33425543 33425753 L1PA5 6144 + 5934 6144 131580 210 chain 57861 chr7 159138663 + 33436149 33437137 L1PA11 4918 + 3552 4674 54056 61 0 1 51 0 1 244 5 6 56 0 1 53 8 185 120 0 1 59 19 18 64 4 0 14 68 55 12 1 0 12 3 2 10 12 5 11 1 0 4 3 1 7 2 0 4 1 0 3 1 0 16 16 10 12 2 1 10 7 0 12 chain 475964 chr7 159138663 + 33442929 33448200 L1PA3long 6157 - 0 6157 7856 726 0 1 4 0 472 1215 0 1 809 0 3 307 0 408 647 0 1 1563 chain 6104 chr7 159138663 + 33515121 33515194 MER20 218 - 58 130 184384 68 1 0 4 chain 555446 chr7 159138663 + 33561359 33567385 L1PA2 6032 - 2 6031 775 2986 0 1 426 0 1 1316 0 1 1298 chain 67648 chr7 159138663 + 33581994 33583160 L1PB1 5432 - 36 1043 49389 5 1 0 21 1 0 24 3 4 10 10 7 16 25 13 15 1 0 44 1 0 16 2 1 53 2 0 9 26 20 24 1 0 7 140 8 204 0 1 215 2 1 57 22 24 125 11 10 73 chain 149775 chr7 159138663 + 33583161 33585310 L1PBa1 4058 - 1892 4048 24652 185 0 3 225 31 31 55 1 0 179 0 9 17 1 0 229 1 0 327 48 47 229 120 118 21 17 6 57 2 0 169 0 4 87 13 26 4 1 0 26 0 2 55 1 0 9 2 0 9 1 0 27 chain 26000 chr7 159138663 + 33587962 33588238 L1PA2 6032 - 4 280 100015 276 chain 23316 chr7 159138663 + 33609085 33609395 AluY 311 + 0 304 114120 94 1 4 20 10 0 14 0 1 171 chain 236104 chr7 159138663 + 33614940 33617672 L1PA6 6164 + 3422 6160 16974 283 0 2 184 4 5 1021 0 3 201 0 1 193 0 2 837 3 0 6 chain 6107 chr7 159138663 + 33623395 33623488 MIR 256 + 64 154 184362 69 0 2 5 2 0 9 3 0 5 chain 92636 chr7 159138663 + 33634502 33635799 L1PA8 5853 + 4531 5853 38773 70 1 12 187 0 1 5 2 1 83 0 1 4 3 0 4 0 1 87 16 22 73 0 2 307 8 21 35 1 2 115 1 0 46 2 0 68 22 20 40 6 5 16 3 2 92 chain 23335 chr7 159138663 + 33642068 33642350 AluSp 311 + 10 291 114003 164 4 3 114 chain 26793 chr7 159138663 + 33701577 33701941 L1PA8A 6298 - 608 989 97006 175 5 7 5 2 0 102 0 11 41 0 6 34 chain 16849 chr7 159138663 + 33729677 33730025 THE1B 368 - 10 368 135984 36 28 30 25 0 1 23 79 85 41 8 9 108 chain 14193 chr7 159138663 + 33787112 33787346 MER47A 366 + 19 263 143905 17 0 1 20 39 48 158 chain 23715 chr7 159138663 + 33796347 33796654 AluSx4 309 + 0 299 111961 29 8 5 254 5 0 11 chain 6473 chr7 159138663 + 33813080 33813193 L1MA9 1812 + 1504 1616 181445 35 3 1 26 12 13 37 chain 14000 chr7 159138663 + 33834646 33835004 MLT1B 390 - 19 379 144578 124 0 2 5 127 125 27 4 0 22 12 22 21 4 0 12 chain 68856 chr7 159138663 + 33836711 33837557 LTR12 884 - 15 884 48871 469 0 22 36 1 2 340 chain 7033 chr7 159138663 + 33837825 33837960 MER20 218 - 21 187 177233 37 6 5 24 24 56 44 chain 123040 chr7 159138663 + 33866197 33867553 L1PA4 6152 - 0 1358 30030 126 2 0 724 0 4 504 chain 23166 chr7 159138663 + 33868247 33868631 MSTA 426 + 0 426 114829 100 25 48 51 2 0 5 2 0 8 24 27 57 3 23 107 chain 29313 chr7 159138663 + 33898861 33899172 AluYa5 310 - 0 310 87492 184 1 0 126 chain 23235 chr7 159138663 + 33900049 33900392 THE1B 368 + 2 359 114523 42 9 24 98 10 8 24 9 11 84 1 0 66 chain 6644 chr7 159138663 + 33920593 33920754 LTR37A 408 + 3 172 180138 54 59 68 29 1 0 18 chain 17286 chr7 159138663 + 33962070 33962272 MER107 203 - 0 202 134819 202 chain 5106 chr7 159138663 + 34002079 34002147 MER20 218 - 36 120 194019 16 0 16 52 chain 551210 chr7 159138663 + 34028231 34034248 L1PA2 6032 - 5 6021 1287 848 0 1 804 0 1 3259 1 0 202 1 0 656 1 0 245 chain 21288 chr7 159138663 + 34036908 34037273 THE1D 372 + 0 360 122906 53 22 10 72 52 59 166 chain 8965 chr7 159138663 + 34104943 34105072 MER20 218 - 58 188 165795 69 1 0 5 5 7 49 chain 4032 chr7 159138663 + 34140587 34140696 MER5A1 166 + 52 161 206897 38 8 9 13 31 30 19 chain 550620 chr7 159138663 + 34209181 34215191 L1PA2 6032 - 0 6020 1361 484 0 1 389 0 1 655 0 1 1069 10 15 373 0 1 2301 0 1 729 chain 20621 chr7 159138663 + 34223367 34223724 THE1D 372 + 2 360 125221 50 23 24 4 1 0 80 50 51 149 chain 93400 chr7 159138663 + 34224671 34225961 HSMAR1 1287 - 0 1287 38535 16 20 21 192 5 6 115 22 28 339 6 8 5 2 0 414 0 2 5 6 4 42 10 0 3 1 0 87 chain 544276 chr7 159138663 + 34239853 34245889 L1PA3long 6157 - 5 6156 2173 4260 0 1 682 0 3 7 3 0 292 0 128 245 4 0 169 0 1 92 9 0 119 0 1 144 3 0 7 chain 9025 chr7 159138663 + 34256371 34256510 THE1D 372 - 0 146 165467 33 5 6 82 7 13 12 chain 512908 chr7 159138663 + 34269173 34275501 L1PA7 6471 - 10 6272 5888 371 0 1 468 1 0 457 0 1 39 0 1 281 1 3 357 1 5 319 0 2 279 0 9 59 1 0 197 0 1 63 0 4 19 1 2 594 0 1 58 1 0 483 1 0 293 0 22 160 29 8 45 1 0 99 0 1 63 1 0 70 8 7 200 0 1 350 97 0 453 1 2 98 1 0 109 1 3 44 2 8 152 chain 213519 chr7 159138663 + 34305223 34307555 L1PA3long 6157 - 5 2336 18254 2197 1 0 134 chain 6404 chr7 159138663 + 34321081 34321158 THE1D 372 - 295 372 181995 77 chain 47576 chr7 159138663 + 34329439 34330165 L1MA3 4352 - 301 1112 60784 49 11 13 178 1 14 376 70 129 19 0 7 15 0 4 7 chain 40314 chr7 159138663 + 34339743 34340183 LTR7Y 441 - 0 441 68860 117 0 1 323 chain 270858 chr7 159138663 + 34341437 34344743 HERVH-int 3825 - 0 3825 15146 58 0 8 159 3 8 254 8 218 39 11 13 191 4 5 195 1 0 327 0 4 48 0 1 5 22 236 35 0 10 295 6 33 241 0 1 595 0 3 64 1 0 52 19 18 11 1 0 42 1 52 24 1 0 10 1 0 38 5 0 36 7 0 496 chain 40643 chr7 159138663 + 34344743 34345184 LTR7Y 441 - 0 441 68381 441 chain 3240 chr7 159138663 + 34352573 34352610 MADE1 96 - 1 38 220222 37 chain 5238 chr7 159138663 + 34418933 34419214 MER57A-int 1588 - 1073 1335 192640 27 1 2 14 133 116 18 46 43 42 chain 24636 chr7 159138663 + 34424887 34425296 MER51B 395 - 11 395 106803 150 7 6 18 4 5 15 1 0 42 56 0 25 4 36 87 chain 27443 chr7 159138663 + 34427630 34427990 THE1C 375 + 5 363 94839 102 2 3 14 9 6 46 0 1 172 1 0 14 chain 26159 chr7 159138663 + 34440648 34441020 THE1B 368 - 0 368 99373 56 10 10 70 1 0 33 9 7 23 2 1 168 chain 507045 chr7 159138663 + 34470943 34477063 L1PA6 6164 + 0 6162 6391 194 1 2 4 1 0 265 1 0 322 0 17 371 15 10 267 14 15 19 8 0 398 0 1 327 0 2 38 0 1 78 1 12 846 4 5 314 12 7 525 0 5 61 0 2 133 0 14 306 0 1 454 0 1 298 0 3 16 0 1 165 0 3 149 0 1 213 1 2 11 0 1 123 8 5 5 1 0 134 1 0 6 1 0 9 chain 8987 chr7 159138663 + 34481757 34481859 L1PA7 6471 - 475 577 165673 102 chain 35142 chr7 159138663 + 34481861 34482616 L1PA7 6471 + 6012 6452 76006 125 1 0 86 321 0 110 2 0 91 0 9 19 chain 48017 chr7 159138663 + 34486041 34486641 L1PA7 6471 + 5870 6469 60473 5 1 0 433 1 2 31 1 0 128 chain 270521 chr7 159138663 + 34496555 34499992 L1P3 4156 + 5 3493 15162 241 6 15 59 2 1 63 5 15 160 0 1 32 5 6 154 1 0 431 0 11 81 8 7 474 1 0 51 2 1 65 0 2 184 15 1 7 0 15 399 5 21 730 0 1 210 0 4 46 chain 244170 chr7 159138663 + 34500000 34502948 L1PA7 6471 + 3508 6465 16549 930 0 1 221 5 6 441 2 0 5 1 3 203 0 1 141 6 12 76 1 0 759 0 1 157 chain 16494 chr7 159138663 + 34537027 34537273 L1PA8 5853 - 0 245 136943 92 2 1 19 2 1 38 0 7 7 18 10 33 0 2 35 chain 36630 chr7 159138663 + 34549359 34549762 L1PA3long 6157 - 0 404 74057 147 0 1 256 chain 528427 chr7 159138663 + 34553106 34558902 L1PA2 6032 + 37 6021 4362 7 0 2 210 1 0 485 0 1 1100 0 1 313 0 186 1049 0 1 2589 1 0 31 1 0 9 chain 9151 chr7 159138663 + 34569163 34569279 L1P4 1494 + 567 683 164803 116 chain 13056 chr7 159138663 + 34570877 34571169 L1MC1 2226 + 1767 2047 148008 75 15 12 24 16 10 27 1 0 43 43 38 11 12 15 25 chain 6265 chr7 159138663 + 34581824 34581897 L1PA8 5853 - 2473 2549 183048 68 0 3 5 chain 90584 chr7 159138663 + 34587638 34588705 L1PA6 6164 - 2 1116 39439 4 1 0 825 0 45 109 2 5 126 chain 19620 chr7 159138663 + 34590274 34590530 AluY 311 + 38 292 128332 62 7 5 187 chain 37183 chr7 159138663 + 34612186 34612637 L1PA5 6144 - 9 437 73257 22 0 1 109 1 0 127 23 0 169 chain 530781 chr7 159138663 + 34615409 34621558 L1PA4 6152 + 0 6140 4108 5 1 0 994 0 1 2183 1 0 66 0 4 708 0 7 116 0 1 382 4 8 219 0 1 4 1 0 91 0 2 509 2 0 596 0 3 96 1 8 71 25 8 8 17 0 49 chain 5991 chr7 159138663 + 34632039 34632111 THE1D 372 + 301 372 185326 39 1 0 32 chain 35903 chr7 159138663 + 34634738 34635186 MER4A1 472 + 0 472 75011 227 1 0 8 0 21 17 3 7 192 chain 13842 chr7 159138663 + 34636754 34636956 Tigger3a 397 - 12 230 145095 16 17 33 169 chain 459844 chr7 159138663 + 34668160 34678616 L1PA7 6471 + 741 6465 8405 472 0 4 344 2 0 211 4793 15 661 0 1 183 0 1 336 0 10 117 0 4 522 7 8 137 0 1 249 0 1 478 17 21 199 0 1 11 0 1 16 4 0 29 0 3 172 1 0 118 0 16 112 0 1 71 3 1 354 1 6 655 0 3 54 2 3 116 3 0 6 chain 207416 chr7 159138663 + 34669194 34671495 L1PA4 6152 - 2457 4759 18689 1155 0 1 4 2 1 206 0 1 934 chain 18828 chr7 159138663 + 34671503 34671720 L1PA4 6152 + 3705 3922 130581 217 chain 38031 chr7 159138663 + 34671720 34672156 L1PA4 6152 + 3923 4359 72085 436 chain 158837 chr7 159138663 + 34672156 34673940 L1PA4 6152 + 4360 6143 23482 1645 1 0 138 chain 30639 chr7 159138663 + 34694436 34694874 LTR7B 505 + 0 503 83141 103 11 12 57 0 38 15 3 27 26 0 2 42 0 1 44 1 0 21 0 1 52 14 13 49 chain 7106 chr7 159138663 + 34719090 34719303 MER6B 211 + 0 211 176709 17 0 3 5 10 0 35 92 97 54 chain 23695 chr7 159138663 + 34756755 34757042 AluSp 311 - 23 311 112057 232 0 1 55 chain 4923 chr7 159138663 + 34765291 34765357 L1MC1 2226 + 1266 1330 196006 9 2 0 55 chain 19575 chr7 159138663 + 34782701 34783039 L1PA14 3548 - 83 406 128448 7 6 0 28 0 1 14 1 0 17 1 0 6 22 19 29 17 12 25 0 1 85 1 0 79 chain 18699 chr7 159138663 + 34783054 34783285 AluSg7 307 - 12 243 130949 16 1 0 147 0 1 67 chain 47862 chr7 159138663 + 34789516 34792221 PABL_A 660 - 0 660 60582 15 1 3 69 2069 0 4 1 0 108 1 0 368 0 9 47 1 16 21 chain 3329 chr7 159138663 + 34807504 34807556 L1MA5A 2387 + 2241 2291 218424 29 5 3 18 chain 19412 chr7 159138663 + 34815992 34816301 L1M1 2793 - 98 391 128913 10 1 0 12 1 0 45 1 0 126 17 10 45 8 4 9 2 0 32 chain 62921 chr7 159138663 + 34823686 34824384 L1P1 4361 - 108 804 51479 102 1 0 475 1 0 119 chain 68314 chr7 159138663 + 34824385 34825145 L1PA3long 6157 + 5389 6149 49117 760 chain 376788 chr7 159138663 + 34839019 34843339 L1PA3long 6157 + 1834 6157 10852 114 1 0 1228 0 1 507 6 5 550 0 4 1914 chain 25637 chr7 159138663 + 34849072 34849349 AluYa5 310 - 8 285 101555 277 chain 517292 chr7 159138663 + 34853551 34859662 L1PA6 6164 + 0 6134 5448 243 0 8 12 0 1 71 7 16 218 1 0 251 1 2 372 4 1 394 0 3 95 4 7 631 0 1 857 7 9 504 1 0 254 0 1 1308 0 1 53 0 3 336 0 1 64 8 2 415 chain 7527 chr7 159138663 + 34881975 34882074 MER20 218 - 28 128 173992 30 1 2 68 chain 4460 chr7 159138663 + 34900161 34900221 Charlie1a 1436 - 282 349 201243 15 0 4 10 0 3 35 chain 121232 chr7 159138663 + 34902563 34903994 L1PA7 6471 + 5029 6470 30625 182 0 1 171 0 1 230 0 4 91 0 1 11 2 1 132 0 1 217 0 3 395 chain 3550 chr7 159138663 + 34916188 34916232 MADE1 96 + 2 46 214535 44 chain 125109 chr7 159138663 + 34922112 34923674 THE1A-int 1579 - 5 1579 29358 76 0 5 149 1 2 93 0 2 51 2 1 51 1 2 191 0 1 382 0 1 550 0 2 15 chain 24844 chr7 159138663 + 34923694 34924022 THE1A 353 - 23 352 105656 23 0 1 71 2 3 122 5 4 105 chain 25344 chr7 159138663 + 34933909 34934324 MSTA 426 + 0 426 102986 32 1 2 98 46 49 55 6 4 59 11 19 33 0 1 74 chain 543479 chr7 159138663 + 34945852 34951862 L1PA3long 6157 + 0 6157 2268 152 0 1 211 0 1 412 1 129 2038 0 1 177 0 1 1216 0 13 1798 0 2 5 chain 74383 chr7 159138663 + 34954259 34955077 L1PA3long 6157 + 4677 5493 46326 159 2 0 657 chain 59669 chr7 159138663 + 34955077 34955740 L1PA3long 6157 + 5494 6157 53010 663 chain 6988 chr7 159138663 + 34959296 34959398 MER3 215 - 15 120 177552 70 11 14 21 chain 24324 chr7 159138663 + 34963615 34963957 THE1B 368 + 0 368 108524 44 0 15 23 8 7 83 1 0 22 9 17 74 0 1 20 0 4 58 chain 38887 chr7 159138663 + 34973068 34973580 MLT2A2 560 + 0 522 70886 44 0 1 138 1 0 13 3 2 208 10 21 95 chain 19506 chr7 159138663 + 34998593 34998827 L1PA7 6471 + 5572 5810 128640 53 0 5 80 1 0 100 chain 53788 chr7 159138663 + 34998827 34999469 L1PA7 6471 + 5811 6453 56482 642 chain 11314 chr7 159138663 + 35016681 35016821 Tigger1 2417 + 2224 2363 155018 32 1 0 107 chain 6297 chr7 159138663 + 35032005 35032083 LTR24B 570 + 46 128 182828 42 0 3 15 0 1 21 chain 25887 chr7 159138663 + 35036933 35037245 AluY 311 + 11 306 100491 115 17 0 180 chain 29052 chr7 159138663 + 35056823 35057134 AluYb9 318 + 0 309 88755 123 2 0 186 chain 3638 chr7 159138663 + 35060764 35060802 tRNA-Gly-GGA 38 + 0 38 213019 38 chain 22178 chr7 159138663 + 35086056 35086345 AluSq10 312 - 10 299 119456 149 15 15 125 chain 14130 chr7 159138663 + 35109883 35110088 THE1D-int 1627 + 1420 1627 144109 131 21 23 53 chain 21905 chr7 159138663 + 35113885 35114216 THE1D 372 + 2 330 120602 14 0 2 14 1 0 21 9 0 16 16 17 42 0 4 59 0 1 31 1 0 107 chain 34523 chr7 159138663 + 35118992 35119431 L1PA8 5853 - 0 438 76874 93 1 0 19 2 1 49 1 4 8 1 2 68 2 0 45 1 0 149 chain 547727 chr7 159138663 + 35132569 35138584 L1PA2 6032 + 2 6029 1736 1286 5 6 1111 0 3 1968 0 4 467 0 2 892 0 1 132 0 1 154 chain 80694 chr7 159138663 + 35139142 35140479 L1MA3 4352 + 3092 4352 43308 93 1 0 198 3 0 201 24 8 281 51 26 18 7 12 165 79 59 16 2 0 5 0 2 82 2 0 24 1 0 6 1 0 6 8 0 13 8 7 14 6 2 22 chain 3744 chr7 159138663 + 35144894 35144935 Tigger4a 237 - 193 234 211275 41 chain 69712 chr7 159138663 + 35150099 35151192 Tigger1 2417 + 1097 2176 48519 46 26 23 72 1 2 145 13 39 100 0 5 83 98 28 290 1 2 134 0 3 18 8 31 58 chain 84799 chr7 159138663 + 35155480 35156394 L1PA3long 6157 + 4569 5483 41594 914 chain 60737 chr7 159138663 + 35156394 35157066 L1PA3long 6157 + 5485 6157 52452 672 chain 530577 chr7 159138663 + 35191438 35197558 L1PA5 6144 + 3 6135 4125 623 0 2 2586 0 1 23 0 1 143 0 4 1117 0 1 46 0 1 105 1 0 361 1 0 277 1 0 98 0 3 289 0 2 449 chain 11329 chr7 159138663 + 35204645 35204776 L1PA5 6144 + 5779 5909 154962 112 1 0 18 chain 26038 chr7 159138663 + 35209318 35209848 L1PA15 4387 + 3840 4354 99868 25 38 36 32 1 0 24 12 25 122 2 1 25 1 0 54 4 3 20 4 0 10 1 0 17 8 1 27 0 1 4 10 7 16 3 0 16 0 1 4 28 21 22 chain 4576 chr7 159138663 + 35211249 35211298 L1PA2 6032 + 5979 6028 199914 49 chain 70126 chr7 159138663 + 35228825 35229604 L1PA5 6144 - 6 786 48339 141 0 1 638 chain 16572 chr7 159138663 + 35231738 35231971 MER75B 242 - 7 240 136729 9 1 0 10 2 0 40 0 4 115 4 1 24 1 3 27 chain 6062 chr7 159138663 + 35247505 35247760 L1ME1 1623 - 1209 1460 184728 28 3 4 15 1 0 6 141 138 34 1 0 26 chain 26071 chr7 159138663 + 35335423 35335737 AluYf4 310 - 3 310 99749 10 2 0 7 6 0 35 0 2 45 1 0 208 chain 27703 chr7 159138663 + 35370677 35371010 L1PA5 6144 - 16 354 94030 125 7 12 201 chain 29502 chr7 159138663 + 35377126 35377604 MER1A 529 - 9 528 86630 49 17 14 151 20 18 153 15 55 39 18 24 16 chain 84204 chr7 159138663 + 35442156 35443149 L1PA7 6471 + 5462 6457 41818 159 1 0 88 1 2 426 1 0 87 0 3 230 chain 3777 chr7 159138663 + 35450759 35450805 MIR 256 - 122 168 210699 46 chain 7668 chr7 159138663 + 35464149 35464281 L1MB1 2102 + 1799 1930 173116 53 26 25 53 chain 5650 chr7 159138663 + 35472930 35472994 L1PA16 3655 + 1892 1956 188567 64 chain 31733 chr7 159138663 + 35481058 35481458 MLT2A1 477 - 74 477 81273 10 1 0 70 5 4 145 1 5 26 0 1 142 chain 103341 chr7 159138663 + 35497060 35498435 THE1B-int 1605 - 15 1605 35910 373 0 1 120 5 4 20 0 4 271 37 38 13 3 2 27 0 184 77 1 26 393 0 2 35 chain 19537 chr7 159138663 + 35513422 35513786 THE1B 368 + 0 368 128548 111 27 29 37 42 37 10 11 19 63 7 6 56 chain 26530 chr7 159138663 + 35514785 35515090 AluYf5 307 - 0 306 97933 100 0 1 205 chain 16952 chr7 159138663 + 35617705 35617955 L1PA8 5853 - 0 245 135724 93 1 0 16 1 0 14 0 1 21 2 0 13 7 6 10 2 1 70 chain 24441 chr7 159138663 + 35697235 35697551 AluY 311 + 0 302 107854 21 2 0 102 1 0 3 8 0 67 3 0 109 chain 3951 chr7 159138663 + 35697570 35697643 L1MA4A 3247 + 3054 3131 208124 23 4 0 24 6 14 16 chain 489164 chr7 159138663 + 35699509 35705341 L1PA5 6144 - 15 6141 7401 37 0 4 76 0 1 1377 0 5 712 0 1 587 3 7 147 1 0 20 0 2 403 32 0 369 0 2 15 0 2 49 1 0 98 0 4 15 0 2 180 0 1 27 1 0 148 0 4 616 1 0 48 9 0 77 1 284 50 23 22 569 3 15 11 11 24 115 chain 136645 chr7 159138663 + 35722000 35723709 L1PB1 5432 + 3289 5006 26702 276 0 1 18 5 1 201 1 0 348 4 5 382 0 4 20 5 6 77 0 2 31 0 5 138 1 0 202 chain 20908 chr7 159138663 + 35726133 35726355 AluYa5 310 + 86 308 124253 222 chain 61183 chr7 159138663 + 35735874 35736620 LTR17 781 + 0 773 52257 327 1 0 102 2 30 314 chain 10762 chr7 159138663 + 35738635 35738879 L1PB1 5432 + 5195 5427 157146 25 2 1 10 7 13 37 1 0 15 26 13 18 2 0 5 1 0 14 2 0 27 6 8 11 0 3 9 1 0 18 2 0 5 chain 26466 chr7 159138663 + 35765303 35765602 AluYk4 311 - 12 311 98182 299 chain 479218 chr7 159138663 + 35778822 35784245 L1PA5 6144 - 6 5446 7756 837 0 4 84 0 1 175 0 1 414 1 0 261 8 12 51 0 1 422 0 1 221 0 1 300 0 1 2412 0 4 237 chain 157666 chr7 159138663 + 35805527 35807443 L1PA7 6471 - 6 1948 23639 7 0 1 143 19 18 88 0 1 22 0 1 282 6 10 191 1 3 13 0 4 57 0 4 178 3 4 75 0 1 81 0 1 325 1 0 197 0 4 74 4 8 149 chain 29643 chr7 159138663 + 35822700 35823046 L1P1 4361 - 35 380 86092 21 1 0 157 1 0 19 0 1 147 chain 58626 chr7 159138663 + 35823048 35823741 L1PA6 6164 + 5471 6162 53625 302 1 0 243 4 3 143 chain 194705 chr7 159138663 + 35827908 35830198 L1PA6 6164 - 2 2310 19605 149 0 3 7 4 1 94 13 14 572 0 4 261 0 1 64 1 0 160 0 1 158 1 0 37 0 13 126 7 6 341 0 1 295 chain 21211 chr7 159138663 + 35879177 35879450 AluSg7 307 - 23 295 123175 45 0 1 95 9 6 5 0 1 119 chain 3102 chr7 159138663 + 35893693 35893726 Tigger4a 237 - 197 230 222906 33 chain 9906 chr7 159138663 + 35917536 35917653 MER47A 366 - 151 268 161043 117 chain 153523 chr7 159138663 + 35949888 35951725 HERVK9-int 4720 + 2243 4720 24153 408 9 649 9 2 0 324 1 0 414 1 0 286 1 0 118 0 4 164 0 1 100 chain 44492 chr7 159138663 + 35951725 35952238 MER9a2 513 + 0 513 63589 513 chain 6048 chr7 159138663 + 35954796 35954866 MER9a3 513 - 239 309 184829 70 chain 8999 chr7 159138663 + 35971560 35971668 L1PA4 6152 - 0 105 165602 6 3 0 99 chain 90295 chr7 159138663 + 35996453 35997501 L1PA6 6164 - 10 1063 39538 569 0 4 136 0 1 343 chain 26218 chr7 159138663 + 36030976 36031328 THE1B 368 - 0 368 99133 77 0 1 7 0 1 110 8 7 101 5 20 44 chain 6714 chr7 159138663 + 36032822 36032912 L1PB 1623 + 1363 1453 179575 62 0 1 20 1 0 7 chain 9620 chr7 159138663 + 36040629 36040756 MLT1D 503 + 0 129 162489 18 2 4 107 chain 28183 chr7 159138663 + 36047786 36048083 AluYb8 318 - 9 306 92372 297 chain 17945 chr7 159138663 + 36053711 36054045 THE1B 368 + 2 345 132990 11 2 0 34 0 1 42 26 27 59 58 67 102 chain 85975 chr7 159138663 + 36056933 36057940 LTR13 1007 - 0 1007 41163 621 4 5 77 16 15 289 chain 3010 chr7 159138663 + 36074294 36074348 MLT1A 405 - 34 91 224821 26 9 12 19 chain 42775 chr7 159138663 + 36078131 36078644 MER41A 554 + 0 522 65685 443 0 4 21 0 5 49 chain 5634 chr7 159138663 + 36095537 36095607 L1MB2 1706 - 21 91 188717 70 chain 11153 chr7 159138663 + 36105267 36105694 LTR12D 1347 - 231 760 155618 34 270 355 16 1 18 106 chain 8487 chr7 159138663 + 36139745 36139952 L1MEf 1413 + 806 1004 168366 30 7 0 16 52 53 36 11 8 55 chain 10855 chr7 159138663 + 36154186 36154318 MSTA 426 - 0 132 156763 132 chain 506898 chr7 159138663 + 36159565 36165753 L1PA6 6164 + 0 6160 6407 274 7 19 156 19 0 120 1 0 61 19 22 136 1 18 640 0 1 134 2 1 366 0 2 43 0 1 295 1 2 36 16 0 188 0 1 260 11 5 403 0 1 4 0 1 471 0 7 300 0 1 698 0 1 250 0 1 596 7 0 22 31 1 116 7 8 340 3 4 154 chain 9979 chr7 159138663 + 36213120 36213304 THE1D 372 + 165 361 160683 15 54 66 115 chain 128546 chr7 159138663 + 36236051 36237518 SVA_D 2077 + 40 2077 28436 12 11 36 454 0 40 302 0 437 28 0 49 525 0 20 127 1 0 7 chain 6524 chr7 159138663 + 36241562 36241642 MER5A1 166 + 13 92 181061 74 1 0 5 chain 45718 chr7 159138663 + 36256627 36257249 MER41B 635 - 7 635 62300 116 0 1 181 16 20 114 1 0 5 1 2 58 5 6 125 chain 78003 chr7 159138663 + 36275733 36276940 LTR12D 1347 + 0 1347 44509 45 0 6 80 0 1 60 0 13 17 0 3 45 14 14 22 98 27 102 0 2 24 10 40 35 1 32 129 0 17 102 0 1 100 10 119 13 1 0 14 20 19 265 chain 10025 chr7 159138663 + 36280343 36280482 MER1B 344 - 0 145 160454 57 13 19 69 chain 30580 chr7 159138663 + 36283324 36283666 L1PA3long 6157 + 5817 6157 83242 5 3 0 4 0 1 330 chain 427473 chr7 159138663 + 36293743 36298912 L1PA7 6471 - 4 6471 9361 86 0 1 248 0 1 235 9 0 275 1 0 469 6 1339 21 22 0 219 0 3 227 0 1 238 0 4 722 0 3 170 4 3 341 1 0 636 9 10 225 1 2 336 0 3 44 0 1 155 23 9 37 10 3 62 0 1 337 chain 98028 chr7 159138663 + 36309924 36311397 L1PA7 6471 - 6 1190 37269 140 3 5 240 0 2 223 0 2 39 312 5 188 2 1 258 0 13 68 chain 20854 chr7 159138663 + 36315660 36315947 MER41B 635 + 2 285 124447 50 7 4 71 1 2 96 2 0 60 chain 3598 chr7 159138663 + 36317159 36317198 MER5A1 166 - 126 165 213689 39 chain 7917 chr7 159138663 + 36329034 36329128 L1MB3 1562 - 210 304 171539 94 chain 21482 chr7 159138663 + 36359798 36360140 THE1B 368 + 2 368 122209 42 13 28 95 6 5 26 35 45 125 chain 31540 chr7 159138663 + 36360156 36360544 THE1B-int 1605 + 18 406 81585 388 chain 20898 chr7 159138663 + 36362054 36362399 THE1B 368 + 21 357 124283 25 0 15 111 1 0 26 75 52 107 chain 20667 chr7 159138663 + 36372550 36372784 L1P3 4156 + 731 965 125079 234 chain 3593 chr7 159138663 + 36379087 36379125 MER5A1 166 + 100 138 213791 38 chain 66678 chr7 159138663 + 36414151 36414921 L1PA6 6164 - 4 770 49646 6 3 0 402 1 0 358 chain 327561 chr7 159138663 + 36414921 36418840 L1P2 5180 - 1247 5178 12289 210 0 1 539 1 0 44 1 0 818 19 10 4 1 0 22 0 1 774 12 13 4 1 0 406 1 4 128 0 25 137 1 0 6 1 0 272 1 0 8 1 0 206 6 7 45 3 2 53 1 0 45 5 4 143 chain 48019 chr7 159138663 + 36422879 36423426 L1PA7 6471 + 5917 6464 60468 547 chain 3244 chr7 159138663 + 36431336 36431467 MER105 203 - 53 202 220136 33 56 73 14 12 13 16 chain 4921 chr7 159138663 + 36448193 36448264 L1MA4 2864 - 55 124 196034 43 3 1 25 chain 10124 chr7 159138663 + 36485979 36486111 MSTA 426 - 0 146 159969 59 0 14 73 chain 71339 chr7 159138663 + 36505147 36506122 MER11A 1151 + 28 1151 47774 17 11 110 139 4 0 32 0 2 112 7 8 38 0 1 47 12 13 135 6 9 52 0 4 31 2 0 41 6 40 49 0 9 234 chain 79087 chr7 159138663 + 36506937 36507939 LTR13 1007 + 0 1007 44011 72 2 0 33 0 2 274 4 5 300 11 15 114 0 1 159 2 1 31 chain 100326 chr7 159138663 + 36516341 36518137 L1PA15 4387 - 81 1538 36686 35 7 4 49 3 2 15 10 6 10 1 0 50 6 5 26 29 28 106 0 24 13 1 0 50 2 0 34 12 13 5 0 1 4 1 0 14 0 2 53 0 1 47 4 6 535 6 5 141 354 0 173 chain 89739 chr7 159138663 + 36527841 36528907 L1PA7 6471 - 2 1075 39742 10 2 0 501 3 9 243 1 0 85 1 0 15 10 0 72 0 15 123 chain 14100 chr7 159138663 + 36535793 36535962 L1MA3 4352 - 1081 1251 144219 87 0 1 82 chain 28664 chr7 159138663 + 36538877 36539302 LTR12_ 688 - 0 688 90475 33 0 236 239 41 0 10 4 3 21 3 69 42 1 4 31 chain 236512 chr7 159138663 + 36540791 36543778 HERV9-int 5642 - 830 5626 16952 35 6 7 134 0 1795 1000 0 1 385 0 3 208 1 0 133 3 4 59 80 0 60 1 86 82 5 6 10 10 9 182 14 13 432 0 4 39 6 7 102 chain 65288 chr7 159138663 + 36543815 36544653 LTR12 884 - 0 884 50430 74 0 4 362 0 1 43 0 22 40 0 1 67 0 2 41 25 0 96 0 41 90 chain 2104 chr7 159138663 + 36544442 36544467 LTR12 884 - 591 616 191135 25 chain 24409 chr7 159138663 + 36559040 36559325 AluSp 311 - 16 301 108032 285 chain 5434 chr7 159138663 + 36564455 36564518 MLT1A0 366 + 275 338 190672 63 chain 556033 chr7 159138663 + 36592577 36598732 L1PA3long 6157 - 0 6157 720 326 18 1 425 0 3 101 0 1 2037 0 1 52 0 1 2587 0 13 609 chain 118225 chr7 159138663 + 36598732 36600375 L1PA16 3655 - 279 1936 31659 22 4 5 45 29 27 72 2 4 279 2 0 19 1 0 80 0 10 52 0 5 81 1 0 45 4 5 28 0 1 226 0 1 136 2 1 133 1 0 95 7 9 166 1 0 10 3 4 20 1 0 76 chain 32582 chr7 159138663 + 36619076 36619520 MLT2A1 477 - 1 477 79889 36 7 41 195 0 1 13 1 0 7 1 2 11 4 1 169 chain 37793 chr7 159138663 + 36673779 36674241 LTR2 463 + 0 463 72425 362 12 13 88 chain 64776 chr7 159138663 + 36688987 36689812 LTR17 781 + 0 781 50672 327 1 0 374 21 0 42 23 1 37 chain 31018 chr7 159138663 + 36699398 36699866 LTR7C 471 + 0 471 82479 97 3 0 10 0 1 35 63 67 227 0 1 33 chain 32246 chr7 159138663 + 36711963 36712390 L1PA8 5853 + 5430 5853 80449 90 0 1 24 0 1 18 1 0 46 2 0 69 1 0 61 2 1 19 1 0 93 chain 38011 chr7 159138663 + 36743958 36744435 L1P3 4156 + 3667 4139 72116 187 5 6 26 3 0 219 13 10 24 chain 3186 chr7 159138663 + 36748481 36748517 Tigger1 2417 + 414 450 221201 36 chain 390922 chr7 159138663 + 36752193 36756575 L1PA4 6152 + 1743 6138 10423 512 1 3 116 1 3 473 0 2 1499 0 4 924 1 0 21 0 1 98 0 3 736 chain 4715 chr7 159138663 + 36782183 36782238 Charlie4z 170 - 20 75 198339 55 chain 53164 chr7 159138663 + 36803323 36804071 LTR12D 1347 + 410 1347 56913 110 25 221 259 2 1 19 20 16 14 2 1 24 8 7 265 chain 23589 chr7 159138663 + 36840726 36841008 AluY 311 + 11 293 112634 282 chain 10164 chr7 159138663 + 36848105 36848251 LTR39 781 - 632 781 159778 104 9 10 9 0 2 24 chain 22244 chr7 159138663 + 36863233 36863524 AluSp 311 + 7 300 119149 103 1 2 93 1 2 93 chain 85960 chr7 159138663 + 36875317 36876424 L1PA8 5853 + 4737 5853 41171 74 0 19 168 0 3 8 6 0 75 0 2 51 8 6 421 1 0 45 2 0 70 18 15 46 2 1 112 chain 150288 chr7 159138663 + 36885580 36887378 L1PA7 6471 + 4666 6468 24567 657 0 4 35 0 1 335 0 2 53 8 6 326 1 0 4 0 1 217 3 1 111 0 1 48 chain 19920 chr7 159138663 + 36974639 36974977 THE1B 368 + 0 346 127401 111 11 12 54 59 66 103 chain 132049 chr7 159138663 + 37013167 37014710 LTR12C 1709 + 0 1709 27624 262 0 2 22 0 4 409 0 159 254 1 0 5 3 1 106 0 4 481 chain 12749 chr7 159138663 + 37121047 37121392 THE1B 368 + 0 367 149258 90 135 150 66 26 33 28 chain 19743 chr7 159138663 + 37131276 37131633 THE1B 368 - 5 368 127976 51 7 6 66 8 16 10 0 4 10 29 23 54 27 28 95 chain 21840 chr7 159138663 + 37142996 37143284 L1PA4 6152 + 5863 6143 120854 159 21 10 35 0 3 73 chain 533515 chr7 159138663 + 37159768 37165900 L1PA5 6144 + 3 6132 3765 117 0 14 1293 1 0 242 9 0 270 1 0 527 0 1 27 0 1 675 1 0 740 0 3 1516 11 1 702 chain 240543 chr7 159138663 + 37177441 37181112 L1PB1 5432 + 2071 5423 16739 284 2 3 19 10 32 86 13 0 56 6 2 269 1 0 11 1 0 72 0 1 84 1 0 413 0 1 24 0 3 261 0 4 37 0 3 594 317 0 42 8 9 118 0 1 8 4 3 62 1 0 48 0 1 84 2 1 160 0 1 230 22 16 25 1 0 5 1 0 14 5 1 9 2 0 52 2 1 15 0 1 9 0 16 15 5 4 15 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 19 chain 492164 chr7 159138663 + 37192771 37198913 L1PA6 6164 + 0 6161 7259 351 50 52 46 19 0 120 1 0 218 0 17 157 1 0 489 0 2 50 0 1 356 0 5 281 13 10 112 6 0 37 0 7 14 12 0 773 10 15 74 1 0 129 0 1 185 1 5 397 0 2 362 1 0 81 11 19 32 0 1 107 1 5 459 1 0 138 1 0 202 0 4 420 0 1 156 2 1 103 0 1 6 1 2 4 1 0 14 0 1 136 chain 550230 chr7 159138663 + 37202950 37209096 L1PA3long 6157 - 0 6157 1415 202 0 1 128 0 5 516 1 2 809 0 2 983 2 1 324 0 1 1990 1 4 100 2 1 1088 chain 106840 chr7 159138663 + 37242322 37243714 HERV9-int 5642 - 4317 5631 35021 53 0 1 19 1 0 141 83 4 110 0 1 199 3 2 191 4 5 140 1 0 106 0 1 341 chain 5132 chr7 159138663 + 37242539 37242599 HERV9-int 5642 - 4535 4595 193762 60 chain 60097 chr7 159138663 + 37243779 37244697 LTR12D 1347 - 0 942 52773 230 0 97 215 2 1 87 22 39 88 1 0 23 0 31 82 119 0 49 chain 6203 chr7 159138663 + 37244529 37244643 LTR12D 1347 - 743 887 140356 14 1 0 21 2 33 76 chain 22162 chr7 159138663 + 37278775 37279069 AluSg7 307 - 14 307 119535 135 27 26 132 chain 23257 chr7 159138663 + 37290142 37290416 AluY 311 + 27 302 114403 99 0 1 175 chain 5462 chr7 159138663 + 37291118 37291181 L1P2 5180 - 3223 3286 190386 63 chain 184727 chr7 159138663 + 37291181 37293336 L1PA7 6471 + 4304 6470 20521 830 0 1 238 0 1 247 0 3 746 1 2 81 0 5 12 chain 94344 chr7 159138663 + 37319523 37320979 L1PB1 5432 + 4034 5424 38249 595 0 1 182 34 32 35 15 16 99 4 3 80 0 1 25 49 11 24 36 29 23 5 10 20 2 1 16 1 0 44 1 0 15 3 0 17 12 2 12 8 5 14 0 5 6 7 0 13 1 0 21 1 0 13 1 0 10 1 0 6 1 0 4 chain 3441 chr7 159138663 + 37327030 37327086 Charlie4a 502 - 192 248 216365 26 6 6 24 chain 161183 chr7 159138663 + 37331519 37333330 SVA_D 2077 + 0 2070 23168 14 4 6 667 0 40 35 0 40 76 0 83 67 0 47 277 0 49 37 2 0 632 chain 260318 chr7 159138663 + 37337908 37340741 L1PA2 6032 - 2 2873 15682 943 1 0 52 0 35 238 6 9 1242 0 1 351 chain 22165 chr7 159138663 + 37346813 37347150 THE1C 375 + 8 368 119521 61 1 0 8 0 14 39 6 27 23 26 15 173 chain 20957 chr7 159138663 + 37348670 37349034 THE1B 368 - 0 368 124076 56 7 6 64 6 14 14 41 37 54 14 15 108 chain 11560 chr7 159138663 + 37356987 37357140 L1MA2 4263 + 3965 4114 154068 93 4 0 11 0 1 35 1 0 9 chain 43375 chr7 159138663 + 37376621 37377129 L1PA4 6152 + 5608 6140 64963 230 4 28 274 chain 4988 chr7 159138663 + 37390746 37390804 U6 107 + 0 58 195265 58 chain 24083 chr7 159138663 + 37395765 37396049 L1PA7 6471 - 358 642 109851 284 chain 15581 chr7 159138663 + 37396049 37396219 L1PA7 6471 + 6134 6304 139638 170 chain 12242 chr7 159138663 + 37396226 37396374 L1PA7 6471 + 6322 6470 151245 148 chain 27009 chr7 159138663 + 37424041 37424339 AluYk4 311 + 0 298 96254 298 chain 26490 chr7 159138663 + 37441061 37441425 THE1C 375 - 0 362 98081 177 25 23 162 chain 7078 chr7 159138663 + 37474735 37474817 HY3 101 + 18 100 176895 82 chain 29222 chr7 159138663 + 37477290 37477608 AluYb8 318 + 0 314 87948 123 2 0 3 2 0 188 chain 14719 chr7 159138663 + 37492615 37492827 MER30 238 + 0 236 142203 106 4 22 19 0 7 45 3 0 22 1 3 12 chain 20504 chr7 159138663 + 37504869 37505223 THE1B 368 - 0 368 125616 119 45 51 24 3 2 41 7 1 60 11 26 44 chain 3103 chr7 159138663 + 37509504 37509544 THE1B 368 + 328 368 222873 40 chain 34837 chr7 159138663 + 37514871 37515311 MLT2A1 477 - 0 477 76424 49 3 43 215 8 5 165 chain 14525 chr7 159138663 + 37534986 37535262 L1PB1 5432 + 5168 5418 142805 52 2 1 15 1 0 45 1 0 15 1 0 6 24 6 18 9 6 14 2 0 24 1 0 22 0 3 9 1 0 14 chain 26594 chr7 159138663 + 37592919 37593280 THE1B 368 - 0 368 97684 17 0 4 10 0 2 44 1 0 118 2 1 126 1 6 27 2 0 13 chain 5955 chr7 159138663 + 37599411 37599482 MADE1 96 + 0 88 185638 39 0 17 32 chain 14459 chr7 159138663 + 37603800 37604008 L1PA8 5853 - 0 204 143018 92 2 1 16 1 0 54 1 0 11 2 1 29 chain 21349 chr7 159138663 + 37606002 37606445 L1MA2 4263 - 151 577 122688 6 1 0 36 1 0 12 7 0 80 46 44 25 7 9 91 78 70 53 chain 73534 chr7 159138663 + 37623712 37624585 MER11D 897 - 0 897 46773 272 9 32 510 1 2 81 chain 46757 chr7 159138663 + 37630318 37630940 PRIMA4_LTR 623 - 0 619 61406 34 1 0 34 3 5 119 5 6 41 14 7 114 1 3 256 chain 9399 chr7 159138663 + 37635435 37635601 L1MA3 4352 - 24 181 163555 14 1 0 22 12 10 21 4 2 23 4 0 65 chain 8859 chr7 159138663 + 37635948 37636079 MLT1A 405 - 232 348 166326 95 15 0 21 chain 24357 chr7 159138663 + 37649469 37649750 AluY 311 + 11 293 108334 121 0 1 160 chain 546080 chr7 159138663 + 37651663 37657675 L1PA3long 6157 - 5 6156 1934 4032 0 1 1215 8 136 281 0 8 114 0 1 211 0 1 151 chain 3603 chr7 159138663 + 37657829 37658022 MLT2B1 522 + 98 296 213606 36 136 141 21 chain 43741 chr7 159138663 + 37667411 37668074 L1MA3 4352 - 24 904 64514 13 1 0 27 10 8 25 2 0 19 5 0 117 48 274 167 0 1 229 chain 332280 chr7 159138663 + 37676425 37681082 L1PA11 4918 - 289 4915 12118 18 46 33 12 2 0 27 31 22 9 0 9 11 2 1 15 8 6 41 0 1 30 2 1 56 0 3 125 24 1 26 5 10 310 4 5 160 0 1 102 4 4 138 3 0 263 0 2 6 2 0 47 3 11 406 1 0 166 19 19 181 0 1 142 1 0 12 1 0 69 15 19 239 1 0 51 6 5 19 0 1 468 1 0 4 10 11 168 0 3 108 18 9 111 0 2 165 1 0 53 1 4 53 0 1 127 0 3 142 8 11 134 1 0 3 2 0 32 1 0 46 7 5 15 1 0 4 0 1 31 4 1 36 2 0 39 chain 4973 chr7 159138663 + 37683417 37683577 MER76 683 + 0 168 195438 25 80 89 31 1 0 23 chain 3178 chr7 159138663 + 37690103 37690147 L1MA10 1535 - 202 244 221380 14 2 0 28 chain 204804 chr7 159138663 + 37690726 37693081 L1PA5 6144 - 4 2364 18870 147 2 0 6 2 7 204 9 8 473 0 4 52 8 0 630 1 0 268 0 4 179 0 4 374 chain 8475 chr7 159138663 + 37704175 37704278 MER51C 639 - 536 639 168428 103 chain 41012 chr7 159138663 + 37712167 37712682 MLT2A2 560 + 0 557 67885 183 1 0 125 0 32 62 0 11 144 chain 126865 chr7 159138663 + 37731600 37733090 L1PA7 6471 - 1 1485 28845 574 1 0 109 0 1 287 7 0 181 0 1 331 chain 13627 chr7 159138663 + 37742197 37742348 L1PA2 6032 + 5878 6029 145872 151 chain 5657 chr7 159138663 + 37771841 37771920 MADE1 96 + 0 95 188497 42 1 17 36 chain 24156 chr7 159138663 + 37781863 37782148 L1PA7 6471 - 12 300 109447 93 0 3 192 chain 9559 chr7 159138663 + 37802591 37802773 L1P3b 214 + 1 175 162781 22 20 15 16 11 12 77 1 0 22 3 0 10 chain 48118 chr7 159138663 + 37804037 37804705 L1PA8 5853 + 5185 5853 60391 374 15 14 35 2 0 67 26 31 33 3 2 19 1 0 93 chain 118902 chr7 159138663 + 37815065 37816624 THE1C-int 1605 + 1 1598 31453 11 4 3 60 0 9 231 12 18 51 1 0 23 10 11 27 0 7 817 0 4 115 1 14 196 chain 129061 chr7 159138663 + 37846137 37847561 L1PA3long 6157 - 2139 3566 28278 434 0 1 413 2 4 575 chain 193794 chr7 159138663 + 37847561 37849684 L1PA3long 6157 + 4029 6157 19702 323 0 1 695 0 1 823 0 3 282 chain 18323 chr7 159138663 + 37850610 37850832 AluY 311 + 82 304 132008 222 chain 34614 chr7 159138663 + 37856746 37857180 MER57A1 433 + 0 433 76739 70 1 0 363 chain 57161 chr7 159138663 + 37880478 37881182 L1PA6 6164 - 2 721 54426 242 14 25 306 4 8 138 chain 39680 chr7 159138663 + 37885432 37885917 L1PA7 6471 - 546 1034 69787 54 0 1 73 2 0 176 1 0 143 0 5 36 chain 47015 chr7 159138663 + 37885917 37886458 L1PA7 6471 + 5929 6470 61193 541 chain 14045 chr7 159138663 + 37889496 37889771 L1MA3 4352 + 4121 4352 144395 29 1 0 4 0 1 105 2 0 22 8 6 22 42 6 12 6 2 22 chain 24824 chr7 159138663 + 37904649 37904961 THE1B-int 1605 - 7 318 105751 39 1 0 272 chain 52195 chr7 159138663 + 37906294 37907025 MER4A 717 - 0 711 57506 222 7 5 92 5 6 119 8 4 36 7 0 105 7 0 106 2 1 15 chain 34211 chr7 159138663 + 37907723 37908165 MER84 505 - 59 505 77336 29 0 1 284 4 7 125 chain 10175 chr7 159138663 + 37909743 37909910 MER30 238 - 0 171 159742 39 3 0 60 1 0 14 20 27 14 0 1 16 chain 9928 chr7 159138663 + 37930249 37930616 L1MA6 2487 - 89 360 160932 20 3 0 5 1 0 6 1 0 24 151 77 29 45 29 32 0 1 22 2 0 26 chain 13464 chr7 159138663 + 37931236 37931391 MER107 203 + 6 161 146471 155 chain 49710 chr7 159138663 + 37937169 37937788 L1PA8A 6298 - 8 643 59226 277 0 6 24 0 9 296 1 2 21 chain 10561 chr7 159138663 + 37974601 37974749 MER2 342 + 145 294 157989 32 4 5 112 chain 8328 chr7 159138663 + 37985985 37986117 L1PA11 4918 - 401 524 169229 9 4 0 20 1 0 14 2 0 67 2 0 13 chain 37505 chr7 159138663 + 37993917 37994349 L1PA7 6471 + 6033 6465 72807 432 chain 29921 chr7 159138663 + 37998511 37998822 AluYb8 318 - 7 318 85038 311 chain 163567 chr7 159138663 + 38036073 38038038 L1PA6 6164 - 2 1972 22868 9 4 0 229 2 1 44 0 1 480 6 5 218 11 17 156 3 4 6 1 0 471 0 3 102 1 2 222 chain 10168 chr7 159138663 + 38048543 38048655 L1PA4 6152 + 6039 6151 159762 112 chain 3353 chr7 159138663 + 38053262 38053300 L1MC3 1789 - 1484 1522 217998 38 chain 108992 chr7 159138663 + 38067981 38069152 L1PA2 6032 - 5 1176 34444 1171 chain 6811 chr7 159138663 + 38069152 38069224 L1PA2 6032 + 4782 4854 176798 72 chain 28512 chr7 159138663 + 38073280 38073586 AluYb8 318 - 12 318 91135 306 chain 3548 chr7 159138663 + 38080058 38080099 MER50 708 + 517 558 214574 41 chain 10242 chr7 159138663 + 38089760 38090247 LTR12C 1709 + 775 1541 159412 29 1 41 42 90 132 32 0 125 32 224 296 37 chain 28622 chr7 159138663 + 38129123 38129482 THE1A 353 + 0 353 90643 110 1 0 173 5 0 70 chain 66648 chr7 159138663 + 38157794 38158743 L1PA13 3608 + 2455 3414 49809 54 1 2 156 16 14 285 9 18 49 1 0 99 2 1 27 1 0 68 0 1 6 0 1 13 6 5 18 2 0 28 0 9 25 1 0 56 8 6 18 chain 5662 chr7 159138663 + 38188632 38188710 L1M1 2793 + 2228 2307 188454 65 1 2 12 chain 238132 chr7 159138663 + 38191368 38194724 L1PA13 3608 + 227 3548 16874 64 2 0 125 14 12 17 2 0 8 0 1 4 14 5 17 6 5 11 1 0 4 2 1 15 2 0 11 6 5 76 0 1 22 2 0 307 2 8 431 0 2 116 0 1 376 16 18 8 2 0 50 1 0 45 0 1 129 0 4 6 4 0 107 15 15 100 1 2 322 1 0 29 0 1 421 1 0 30 1 0 48 0 1 64 2 0 58 0 4 56 1 0 5 2 0 47 2 0 5 2 0 20 1 0 23 3 0 15 5 0 8 17 11 10 4 1 12 chain 18834 chr7 159138663 + 38198843 38199121 AluY 311 + 11 297 130561 14 35 42 65 0 1 164 chain 8130 chr7 159138663 + 38203686 38203783 MER85 139 + 32 139 170332 58 0 10 39 chain 44772 chr7 159138663 + 38207161 38207673 MER9a2 513 - 0 513 63316 283 0 1 229 chain 63203 chr7 159138663 + 38214788 38215650 LTR12D 1347 - 0 942 51359 19 1 0 71 0 33 142 1 0 33 1 0 12 20 17 170 7 11 103 0 1 24 1 18 126 0 31 131 chain 41550 chr7 159138663 + 38242177 38242646 L1PA5 6144 - 1 470 67223 469 chain 207648 chr7 159138663 + 38242646 38244934 L1P1 4361 + 1542 3829 18665 299 0 5 628 6 0 1355 chain 90692 chr7 159138663 + 38270444 38271458 LTR5A 1029 - 0 1029 39390 262 0 2 602 0 13 150 chain 6540 chr7 159138663 + 38274373 38274488 MER75B 242 + 0 117 180921 29 3 5 18 13 13 52 chain 28484 chr7 159138663 + 38281637 38281952 AluYa5 310 - 0 310 91245 58 5 0 252 chain 10124 chr7 159138663 + 38348085 38348210 MER20 218 - 0 127 159973 60 0 2 65 chain 48996 chr7 159138663 + 38371843 38372400 LTR6B 557 + 0 557 59751 50 1 0 309 0 1 197 chain 57123 chr7 159138663 + 38375698 38376410 LTR30 714 - 0 714 54449 256 8 9 185 4 5 29 8 0 8 1 9 213 chain 36769 chr7 159138663 + 38394341 38394791 L1PA5 6144 + 5687 6136 73846 265 4 3 181 chain 37289 chr7 159138663 + 38403483 38403935 L1PA5 6144 + 5685 6136 73097 267 4 3 181 chain 28611 chr7 159138663 + 38435756 38436122 THE1B 368 + 0 368 90689 13 2 0 27 0 5 127 2 1 195 chain 122228 chr7 159138663 + 38526854 38528276 L1PA7 6471 + 5041 6466 30301 575 6 5 643 0 2 10 0 2 188 chain 37225 chr7 159138663 + 38587163 38588090 MER4A1_ 611 - 0 607 73202 13 0 1 54 7 8 120 1 2 10 24 23 107 2 3 42 2 0 19 8 5 42 314 0 29 5 6 13 7 0 26 6 7 35 0 1 41 chain 7179 chr7 159138663 + 38595462 38595547 L1PA16 3655 + 3490 3575 176216 85 chain 95667 chr7 159138663 + 38606023 38607141 L1PA6 6164 + 5030 6159 37909 285 1 10 654 0 1 30 0 1 148 chain 3319 chr7 159138663 + 38613499 38613538 MIR 256 - 100 139 218604 39 chain 53171 chr7 159138663 + 38629695 38630386 LTR17 781 - 96 781 56909 358 1 0 72 5 4 18 1 0 54 1 0 18 6 5 100 1 0 56 chain 35000 chr7 159138663 + 38631466 38631927 MER9a3 513 - 0 498 76190 77 2 3 98 0 2 6 0 4 62 6 5 97 0 30 18 0 1 95 chain 17666 chr7 159138663 + 38649614 38649819 AluSp 311 + 60 265 133782 205 chain 9054 chr7 159138663 + 38665768 38665882 L1PA8 5853 - 0 112 165289 93 2 0 19 chain 18928 chr7 159138663 + 38667044 38667272 AluY 311 + 71 300 130295 54 1 2 173 chain 31904 chr7 159138663 + 38672987 38673431 MLT2A1 477 + 0 477 81004 10 0 1 158 4 1 9 0 1 24 0 1 72 17 11 88 0 1 18 10 48 34 chain 36086 chr7 159138663 + 38688742 38689168 L1PA7 6471 - 1919 2347 74556 115 0 1 37 0 1 274 chain 148351 chr7 159138663 + 38689168 38690963 L1PA7 6471 + 4666 6461 24833 231 0 1 536 1 2 106 2 1 78 1 0 76 0 1 33 0 1 232 1 2 112 2 0 25 2 0 5 1 3 186 1 0 4 0 1 6 2 1 152 chain 16484 chr7 159138663 + 38706655 38706855 L1PA6 6164 - 2 195 136971 81 7 0 112 chain 98790 chr7 159138663 + 38707282 38708464 L1P1 4361 - 33 1226 37076 23 5 4 153 7 6 512 0 1 211 0 13 19 1 0 251 chain 4385 chr7 159138663 + 38712499 38712549 Tigger3b 1229 + 54 104 202143 50 chain 11252 chr7 159138663 + 38724491 38724659 L1MA8 2339 - 263 424 155217 67 1 0 51 2 0 25 6 2 16 chain 3152 chr7 159138663 + 38732135 38732181 MER4B 649 - 226 270 221897 16 2 0 28 chain 42158 chr7 159138663 + 38736709 38737165 L1PA3long 6157 + 5701 6157 66444 456 chain 4261 chr7 159138663 + 38743843 38743905 MADE1 96 - 18 96 203733 19 1 17 42 chain 6895 chr7 159138663 + 38813961 38814044 THE1D 372 - 40 123 178226 83 chain 224316 chr7 159138663 + 38925634 38928528 L1P2 5180 + 2 2895 17634 143 39 41 8 1 0 50 10 9 193 19 0 67 8 7 43 1 0 224 0 15 326 19 19 20 0 1 1025 0 2 11 0 2 110 2 1 75 5 6 495 chain 15204 chr7 159138663 + 38928528 38928718 L1PA7 6471 + 6281 6470 140765 26 0 1 151 2 0 11 chain 13387 chr7 159138663 + 38936040 38936254 MER30 238 + 0 238 146761 92 21 38 22 0 6 48 8 9 23 chain 2757 chr7 159138663 + 38949067 38949100 MIRb 242 - 49 82 229347 33 chain 26686 chr7 159138663 + 38987058 38987483 LTR3B_ 500 - 72 500 97361 8 3 0 36 52 61 22 0 2 121 6 0 16 3 4 158 chain 93290 chr7 159138663 + 38998666 39000000 L1PREC2 3366 + 1064 2823 38567 35 18 18 107 45 475 11 0 1 52 4 1 623 7 6 73 0 1 46 0 3 195 3 0 41 2 0 54 1 0 17 chain 5923 chr7 159138663 + 39035006 39035083 L1PA4 6152 + 6076 6150 185954 66 3 0 8 chain 553991 chr7 159138663 + 39047127 39053152 L1PA2 6032 - 2 6030 951 850 0 5 982 0 1 1953 0 1 1326 1 0 327 3 0 583 chain 119029 chr7 159138663 + 39063559 39064891 L1PA3long 6157 - 1454 2787 31370 752 7 8 573 chain 132939 chr7 159138663 + 39064891 39066353 L1PA3long 6157 + 4688 6150 27435 1462 chain 5551 chr7 159138663 + 39086520 39086763 L1MB8 1703 - 1152 1392 189551 28 134 135 40 16 12 25 chain 5882 chr7 159138663 + 39210449 39210513 MER41B 635 + 486 550 186354 64 chain 15019 chr7 159138663 + 39210636 39210843 L1PA8 5853 - 0 204 141268 93 1 0 19 2 1 39 2 3 5 1 0 14 1 0 30 chain 18700 chr7 159138663 + 39222621 39222846 MER1B 344 + 42 267 130946 225 chain 51938 chr7 159138663 + 39233978 39234678 LTR12_ 688 + 0 688 57656 172 24 0 42 1 0 4 0 1 207 2 1 5 1 0 38 3 8 60 0 1 13 0 8 128 chain 3593 chr7 159138663 + 39309944 39309982 MIR 256 - 121 159 213765 38 chain 267772 chr7 159138663 + 39313741 39316657 L1PA3long 6157 + 3236 6153 15306 1976 0 1 940 chain 112501 chr7 159138663 + 39337314 39338771 L1PA8 5853 + 4405 5853 33535 165 0 1 146 12 2 285 4 5 73 0 2 55 0 3 28 14 17 10 1 0 318 1 0 49 9 8 36 2 0 71 1 0 8 2 1 56 1 0 16 1 0 93 chain 38377 chr7 159138663 + 39400146 39400629 MER41A 554 - 0 491 71605 41 1 0 78 0 1 18 1 0 101 0 1 161 0 7 52 0 1 30 chain 55237 chr7 159138663 + 39403888 39404699 L1PB1 5432 - 12 787 55561 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 25 12 15 1 0 45 7 6 9 2 1 50 3 1 11 6 2 10 1 0 8 1 0 24 1 0 11 2 0 296 1 0 162 chain 48989 chr7 159138663 + 39404699 39405311 L1PB1 5432 + 4031 4646 59633 136 4 0 50 5 6 173 0 6 144 1 0 75 0 1 24 chain 26243 chr7 159138663 + 39468396 39468724 L1PA5 6144 + 5816 6142 99043 94 1 2 168 0 1 54 4 0 7 chain 441761 chr7 159138663 + 39474292 39480792 L1PA8A 6298 - 13 5473 9004 53 0 1 35 6 8 656 0 2 37 1 4 296 0 2 117 1 5 560 0 1 543 0 2 89 1 2 467 1 0 142 0 2 76 2 1 160 739 0 55 0 4 127 3 4 323 2 1 282 322 0 93 3 2 511 1 0 248 6 7 21 0 4 183 0 2 16 39 30 14 0 4 51 1 0 217 chain 46950 chr7 159138663 + 39477546 39478077 L1PA5 6144 - 0 531 61257 253 1 0 163 0 1 114 chain 15488 chr7 159138663 + 39478085 39478274 L1PA8A 6298 + 5609 5798 139930 189 chain 202774 chr7 159138663 + 39517192 39519924 L1PA7 6471 + 4038 6466 19009 74 0 3 370 318 0 189 0 4 276 1 0 242 0 4 423 0 5 70 4 5 175 0 1 394 15 15 32 0 1 137 4 0 8 chain 12709 chr7 159138663 + 39534799 39534995 L1PA8 5853 - 0 197 149419 93 1 0 16 1 0 30 5 1 6 0 4 11 1 5 8 1 0 23 chain 24443 chr7 159138663 + 39549982 39550278 L1PA4 6152 + 5845 6146 107840 149 4 0 8 0 9 135 chain 11486 chr7 159138663 + 39551826 39552068 AluSz6 309 + 6 247 154355 37 0 5 85 87 81 33 chain 73012 chr7 159138663 + 39562652 39563500 L1PA6 6164 - 2 853 47021 190 1 0 15 0 3 638 0 1 4 chain 5111 chr7 159138663 + 39566478 39566555 MLT1F1 559 + 190 290 193970 43 8 31 26 chain 6959 chr7 159138663 + 39566632 39566734 L1PA8 5853 + 5703 5805 177753 37 2 1 16 4 3 6 0 2 37 chain 11858 chr7 159138663 + 39573698 39573860 MER30 238 - 5 177 152798 38 3 0 73 2 0 7 0 15 39 chain 27287 chr7 159138663 + 39577433 39577736 AluYf5 307 + 0 303 95321 303 chain 28895 chr7 159138663 + 39592067 39592370 AluYa5 310 - 7 310 89473 303 chain 7023 chr7 159138663 + 39592376 39592725 MER21C 908 + 558 882 177304 17 166 150 27 19 17 59 43 36 18 chain 10787 chr7 159138663 + 39617471 39617660 LTR12C 1709 + 935 1171 157048 94 2 90 41 41 0 11 chain 5424 chr7 159138663 + 39617803 39617866 LTR12C 1709 + 650 713 190766 63 chain 111835 chr7 159138663 + 39700863 39702451 THE1B-int 1605 - 5 1603 33708 112 0 2 10 0 1 178 0 9 330 5 18 97 12 9 122 30 24 25 1 2 88 44 11 48 0 1 4 1 0 26 24 51 136 3 5 66 1 0 33 3 1 189 chain 67655 chr7 159138663 + 39716860 39717588 L1PA2 6032 - 208 939 49385 550 0 3 178 chain 19985 chr7 159138663 + 39717588 39717805 L1PA2 6032 + 5815 6032 127190 217 chain 15610 chr7 159138663 + 39724217 39724428 MER30 238 - 0 238 139550 71 0 6 50 4 14 38 0 3 8 0 8 40 chain 23704 chr7 159138663 + 39726752 39727040 AluY 311 + 6 297 112010 18 0 2 106 6 7 158 chain 60009 chr7 159138663 + 39732488 39733174 L1PA6 6164 + 5475 6162 52816 142 0 1 544 chain 30165 chr7 159138663 + 39738720 39739038 AluYb8 318 - 0 318 84288 318 chain 15827 chr7 159138663 + 39742180 39742626 L1MA5A 2387 + 1963 2375 138863 18 17 18 32 4 3 24 13 12 16 29 33 36 2 0 19 10 8 36 3 0 15 16 0 44 54 40 12 1 0 11 1 0 21 0 2 12 chain 10658 chr7 159138663 + 39761116 39761335 MER21A 919 - 674 919 157577 32 11 13 23 10 0 22 1 0 19 2 12 23 6 20 22 9 20 39 chain 4218 chr7 159138663 + 39793078 39793303 LTR12C 1709 - 991 1058 204317 42 164 6 19 chain 2788 chr7 159138663 + 39807613 39807670 MER8 282 + 179 235 228895 18 13 12 26 chain 41590 chr7 159138663 + 39808676 39809145 L1PA4 6152 - 16 488 67165 33 0 1 104 0 2 332 chain 41477 chr7 159138663 + 39850146 39850657 MER9a1 513 - 0 513 67315 54 0 2 284 9 9 164 chain 28973 chr7 159138663 + 39870039 39870344 AluYa5 310 - 5 310 89122 305 chain 110676 chr7 159138663 + 39881918 39883432 THE1D-int 1627 + 56 1627 34037 345 4 5 83 0 2 56 19 18 202 7 1 9 0 6 369 29 68 74 0 3 95 1 0 152 5 16 27 4 7 33 chain 2850 chr7 159138663 + 39891241 39891274 MER58A 224 - 144 177 227859 33 chain 4450 chr7 159138663 + 39915898 39915948 L1PA16 3655 - 1220 1270 201343 50 chain 24625 chr7 159138663 + 39927379 39927671 AluSp 311 - 9 301 106856 292 chain 39812 chr7 159138663 + 39931292 39931999 LTR8 732 + 0 717 69611 136 1 0 252 183 194 135 chain 24654 chr7 159138663 + 39943326 39943656 THE1A 353 - 0 353 106701 95 10 29 88 0 4 27 1 0 85 0 1 24 chain 21160 chr7 159138663 + 39979809 39980058 AluSp 311 + 49 298 123340 249 chain 21168 chr7 159138663 + 39982057 39982403 THE1A 353 - 0 346 123316 164 42 43 36 1 0 17 14 0 9 1 15 62 chain 477526 chr7 159138663 + 40001241 40006722 L1PA4 6152 - 0 5515 7816 6 0 5 599 0 1 239 0 4 263 1 10 1019 0 4 24 0 1 287 1 2 306 2 0 125 0 1 73 7 0 109 0 4 53 0 1 8 1 0 492 0 4 85 0 3 1007 3 12 231 8 4 130 0 1 402 chain 13451 chr7 159138663 + 40016211 40016402 MER44A 345 - 53 257 146526 10 2 0 104 0 7 50 2 0 10 0 10 13 chain 115777 chr7 159138663 + 40021618 40022891 L1PA3long 6157 - 2 1272 32535 1054 3 0 216 chain 22682 chr7 159138663 + 40024867 40025220 L1MA2 4263 - 150 488 117151 8 1 0 29 2 0 6 0 1 11 7 0 93 11 9 17 8 7 126 3 0 31 chain 37306 chr7 159138663 + 40074960 40075456 MER1A 529 + 48 521 73074 105 0 3 5 3 0 294 21 0 6 2 0 60 chain 5935 chr7 159138663 + 40146798 40146887 Tigger3d 321 + 0 82 185836 22 8 0 34 0 1 25 chain 6686 chr7 159138663 + 40167722 40167822 HY1 111 - 1 102 179782 32 8 7 30 0 2 30 chain 45931 chr7 159138663 + 40181351 40181943 LTR10F 562 - 0 562 62101 181 0 1 149 3 0 123 29 1 107 chain 2511 chr7 159138663 + 40181807 40181835 LTR10F 562 - 370 398 186003 28 chain 193676 chr7 159138663 + 40182242 40185024 HERVIP10FH-int 2884 - 60 2735 19713 35 10 4 14 1 0 16 1 0 35 1 0 15 2 1 64 1 0 366 76 74 29 54 53 68 10 9 258 5 4 13 16 5 39 22 10 43 20 3 14 7 1 13 66 43 124 7 2 63 1 0 7 27 20 175 2 0 111 3 2 443 0 1 20 1 0 228 4 0 74 0 1 111 4 0 59 0 1 4 chain 35565 chr7 159138663 + 40185959 40186421 MER9a3 513 - 21 513 75459 57 0 1 91 4 25 37 8 7 18 1 0 78 0 1 56 0 7 99 0 2 13 chain 38617 chr7 159138663 + 40187426 40187901 LTR10F 562 - 8 562 71271 326 5 0 28 1 85 115 chain 14702 chr7 159138663 + 40189698 40189972 LTR8 732 + 260 565 142265 52 9 36 115 7 9 19 11 17 18 24 20 19 chain 54431 chr7 159138663 + 40207060 40207822 LTR17 781 - 24 781 56077 20 30 31 379 1 0 72 5 4 15 1 0 44 16 14 22 1 0 156 chain 181958 chr7 159138663 + 40208148 40210560 HERV17-int 4347 - 0 4334 20790 299 2 0 313 0 1672 45 0 3 317 5 10 194 9 10 7 3 0 58 0 1 193 3 7 419 2 0 9 0 2 23 0 430 196 1 0 27 2 0 33 186 1 51 1 0 14 chain 4179 chr7 159138663 + 40210314 40210375 HERV17-int 4347 - 4273 4333 203900 47 2 1 12 chain 4712 chr7 159138663 + 40210375 40210428 HERV17-int 4347 - 4155 4208 198381 53 chain 2703 chr7 159138663 + 40210459 40210492 HERV17-int 4347 - 4235 4268 230204 33 chain 41880 chr7 159138663 + 40226581 40227045 L1PA4 6152 + 5688 6152 66789 464 chain 25925 chr7 159138663 + 40234810 40235109 AluSc5 308 - 0 298 100319 151 1 0 147 chain 34529 chr7 159138663 + 40250109 40250607 LTR10F 562 - 0 562 76864 79 10 8 198 0 34 7 3 6 7 7 0 28 11 42 67 0 5 81 chain 58974 chr7 159138663 + 40258057 40258945 LTR12D 1347 + 405 1347 53412 118 25 0 12 2 33 125 1 18 17 42 1 6 1 0 9 24 0 241 0 97 265 chain 2657 chr7 159138663 + 40258357 40258399 LTR12D 1347 + 645 687 177756 42 chain 35864 chr7 159138663 + 40317304 40317709 L1PA3long 6157 - 15 420 75047 405 chain 35625 chr7 159138663 + 40317709 40318107 L1PA3long 6157 + 5328 5729 75376 78 0 3 320 chain 196076 chr7 159138663 + 40329069 40331249 L1PA4 6152 + 3954 6136 19493 927 3 4 593 0 1 657 chain 2786 chr7 159138663 + 40331282 40331314 MER44A 345 - 202 234 228919 32 chain 11398 chr7 159138663 + 40344058 40344318 L1PB1 5432 - 9 248 154706 5 1 0 12 1 0 4 0 1 5 5 4 22 1 0 24 2 0 14 15 13 11 23 12 15 3 2 42 1 0 15 6 5 33 chain 7572 chr7 159138663 + 40344419 40344518 L1PB 1623 + 763 856 173712 80 6 0 13 chain 22731 chr7 159138663 + 40351649 40351928 AluSp 311 - 15 300 116916 17 4 12 139 2 0 117 chain 4625 chr7 159138663 + 40360563 40360626 L1PB4 2604 - 32 102 199350 20 1 0 11 0 8 31 chain 537164 chr7 159138663 + 40373369 40379486 L1PA5 6144 - 16 6144 3291 339 0 1 102 0 1 193 1 0 858 0 5 398 0 1 1529 5 6 1038 0 1 574 20 21 482 0 1 578 chain 33283 chr7 159138663 + 40390253 40390658 L1PA7 6471 - 12 421 78753 135 6 10 264 chain 158236 chr7 159138663 + 40402590 40404326 L1PA3long 6157 - 2680 4415 23558 956 1 0 779 chain 245260 chr7 159138663 + 40404328 40407025 L1PA3long 6157 + 3461 6157 16499 2554 1 0 142 chain 216582 chr7 159138663 + 40429413 40431874 L1PA5 6144 + 3661 6125 18081 819 1 3 590 0 1 1051 chain 3348 chr7 159138663 + 40431902 40431938 LTR13A 966 + 83 119 218088 36 chain 40220 chr7 159138663 + 40468914 40469436 MLT2A2 560 - 0 560 69006 147 3 14 40 4 0 20 0 32 127 1 0 180 chain 209831 chr7 159138663 + 40482335 40484720 L1PA5 6144 - 12 2398 18500 832 0 1 1553 chain 53027 chr7 159138663 + 40484720 40485350 L1PA5 6144 + 3104 3735 56998 404 14 15 212 chain 10072 chr7 159138663 + 40494033 40494180 Tigger3c 601 - 74 215 160214 103 16 10 28 chain 8469 chr7 159138663 + 40627829 40627926 L1PA2 6032 - 0 96 168466 20 1 0 76 chain 6814 chr7 159138663 + 40628889 40629002 MLT1A1 405 - 36 159 178848 36 1 0 8 0 1 37 14 24 17 chain 40237 chr7 159138663 + 40633493 40633934 L1PA2 6032 + 5588 6029 68965 441 chain 31547 chr7 159138663 + 40641854 40642288 LTR3B 427 - 0 427 81572 55 0 5 24 19 11 25 5 2 144 1 0 161 chain 21336 chr7 159138663 + 40648910 40649175 AluY 311 + 27 308 122731 199 12 28 54 chain 52125 chr7 159138663 + 40666733 40667429 MER51A 677 - 0 677 57543 62 1 0 100 3 2 280 0 10 24 17 7 16 17 0 176 chain 334150 chr7 159138663 + 40858372 40862161 L1PA5 6144 - 13 3799 12048 313 0 3 93 3 1 913 5 0 186 1 0 486 5 7 447 1 0 62 0 1 449 1 0 109 0 1 70 0 1 625 1 0 19 chain 3094 chr7 159138663 + 40874658 40874693 MER3 215 - 5 40 223028 35 chain 19504 chr7 159138663 + 40897802 40898031 AluSp 311 + 82 311 128646 229 chain 26072 chr7 159138663 + 40907815 40908123 L1PA8A 6298 - 7 318 99743 83 1 0 141 0 4 83 chain 28799 chr7 159138663 + 40935998 40936377 THE1C 375 + 0 375 89902 119 5 1 65 1 2 163 1 0 25 chain 40330 chr7 159138663 + 40937334 40938031 LTR12D 1347 + 588 1281 68834 61 0 2 48 14 7 149 31 34 103 29 9 18 4 0 30 38 35 37 16 8 96 0 33 23 chain 23837 chr7 159138663 + 40947694 40947999 AluY 311 + 0 300 111266 18 4 3 97 5 0 14 0 1 167 chain 8432 chr7 159138663 + 40951212 40951350 MER20 218 - 40 180 168676 21 0 1 10 2 0 52 15 18 38 chain 11607 chr7 159138663 + 40953877 40954000 L1PA2 6032 - 1 124 153862 123 chain 519942 chr7 159138663 + 40968545 40974654 L1PA6 6164 - 10 6164 5167 174 8 18 455 0 3 189 0 1 2980 7 0 378 1 0 107 0 1 1024 0 17 411 0 1 168 10 15 33 7 21 127 17 18 13 chain 138950 chr7 159138663 + 40978366 40980750 L1PB3 3668 - 87 2086 26319 12 11 7 27 9 7 25 1 0 3 1 0 18 23 7 84 4 3 40 378 4 37 1 0 16 1 0 58 1 9 217 2 0 1 0 3 13 0 2 140 0 4 54 10 11 112 1 0 213 2 0 53 1 0 29 1 0 260 3 0 19 1 0 121 0 1 23 21 0 8 11 40 318 chain 133412 chr7 159138663 + 40982896 40984354 L1PA3long 6157 - 15 1487 27338 341 0 1 995 0 13 122 chain 5590 chr7 159138663 + 40984354 40984415 L1PA3long 6157 + 4612 4673 187420 61 chain 450571 chr7 159138663 + 40988075 40994188 L1PA7 6471 - 20 6466 8751 128 2 3 610 2 0 5 8 10 74 1 0 275 0 1 292 1 0 682 2 3 4 1 0 343 14 12 388 0 4 131 8 10 240 0 1 594 2 0 6 8 0 7 8 19 453 1 2 257 0 1 394 11 20 211 0 25 137 25 8 34 28 49 141 8 84 28 89 117 38 97 294 194 22 8 109 chain 332631 chr7 159138663 + 40995552 40999729 L1P3 4156 - 17 4153 12103 26 2 1 5 2 0 229 0 1 272 1 2 20 0 3 30 0 4 49 2 0 90 0 4 539 6 7 87 2 0 140 18 1 62 6 0 147 23 4 283 0 2 415 15 16 518 1 0 665 0 2 106 8 0 89 1 0 69 1 0 248 chain 65167 chr7 159138663 + 41001192 41002016 LTR12 884 - 8 884 50486 421 0 1 77 2 0 160 0 25 30 27 55 107 chain 3744 chr7 159138663 + 41020595 41020636 MLT1A-int 1186 - 342 383 211277 41 chain 3952 chr7 159138663 + 41065780 41065830 MER45A 178 + 127 177 208115 50 chain 4705 chr7 159138663 + 41076219 41076284 MADE1 96 + 6 96 198459 11 0 25 54 chain 25142 chr7 159138663 + 41097139 41097503 THE1C 375 + 16 375 104055 105 13 10 48 0 2 5 23 19 170 chain 5585 chr7 159138663 + 41145885 41145955 L1PA16 3655 - 77 147 189228 70 chain 6364 chr7 159138663 + 41151076 41151237 L1MA5A 2387 - 12 155 182286 10 1 3 22 1 0 10 1 0 13 49 31 54 chain 78146 chr7 159138663 + 41159027 41160212 L1PB1 5432 - 19 1174 44440 9 1 0 13 1 0 21 1 0 20 28 23 19 13 5 7 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 20 15 5 1 0 24 16 14 70 1 6 209 10 10 179 4 1 367 chain 7587 chr7 159138663 + 41207123 41207347 MLT1A0 366 + 73 316 173626 34 118 137 72 chain 13126 chr7 159138663 + 41219536 41219701 L1PA4 6152 - 0 168 147738 13 1 4 151 chain 8574 chr7 159138663 + 41219701 41219797 L1PA4 6152 + 5892 5988 167882 96 chain 6244 chr7 159138663 + 41229548 41229647 MER45B 1037 + 216 316 183221 12 14 15 73 chain 49747 chr7 159138663 + 41267643 41268542 L1PB1 5432 - 10 865 59195 18 1 0 12 1 0 22 1 0 24 2 0 10 46 34 6 2 0 15 1 0 44 1 0 16 2 1 52 2 0 6 8 4 14 1 0 10 1 0 20 40 39 46 0 1 89 6 7 87 0 1 31 0 9 59 0 1 118 43 17 42 chain 23472 chr7 159138663 + 41340313 41340600 AluSp 311 - 3 303 113260 8 4 0 243 0 17 32 chain 62451 chr7 159138663 + 41340921 41341901 L1PB1 5432 - 14 934 51693 14 1 0 13 1 0 21 1 0 20 94 75 34 0 5 69 2 0 9 6 2 10 1 0 8 1 0 24 45 11 193 0 2 101 3 4 171 4 0 134 chain 8313 chr7 159138663 + 41346182 41346283 MER121 330 - 161 262 169317 101 chain 57323 chr7 159138663 + 41357805 41358619 LTR12 884 - 10 884 54326 150 19 35 109 10 9 104 25 25 29 1 2 34 2 0 39 2 3 22 1 44 16 4 6 247 chain 22211 chr7 159138663 + 41382784 41383105 LTR73 568 - 235 562 119299 158 32 38 131 chain 29153 chr7 159138663 + 41397977 41398281 AluYb8 318 - 14 318 88301 304 chain 30254 chr7 159138663 + 41404289 41404646 L1PA8A 6298 + 5316 5676 84057 173 0 3 184 chain 53384 chr7 159138663 + 41404656 41405287 L1PA6 6164 + 5081 5717 56776 325 0 5 306 chain 51776 chr7 159138663 + 41405986 41406667 L1PA8 5853 + 5173 5853 57769 208 0 2 181 1 0 44 2 0 6 0 4 61 24 22 39 2 1 19 1 0 93 chain 44344 chr7 159138663 + 41452969 41453664 L1PA14 3548 - 92 772 63766 42 1 0 8 15 13 15 4 2 25 24 19 111 1 0 84 2 1 5 2 0 13 10 6 107 2 0 7 7 5 39 16 23 155 chain 41920 chr7 159138663 + 41474621 41475206 LTR12_ 688 + 0 688 66733 77 26 1 43 0 25 21 3 2 83 6 7 162 0 103 164 chain 21714 chr7 159138663 + 41502043 41502303 AluY 311 + 52 310 121332 69 3 0 11 0 1 177 chain 12926 chr7 159138663 + 41519128 41519284 L1PA5 6144 + 5979 6128 148525 53 7 0 96 chain 8838 chr7 159138663 + 41527313 41527420 MER121 330 + 93 200 166446 107 chain 90656 chr7 159138663 + 41562793 41563863 MER11C 1089 - 16 1088 39405 710 0 1 339 1 2 20 chain 5827 chr7 159138663 + 41583064 41583135 L1PA4 6152 + 6076 6152 186881 65 0 5 6 chain 37656 chr7 159138663 + 41586658 41587186 MER41C 542 - 7 542 72610 146 43 48 22 4 5 264 0 1 49 chain 302002 chr7 159138663 + 41589199 41592878 L1PA6 6164 - 15 6164 13323 81 0 2 44 8 0 11 1 9 756 0 1 1519 10 11 184 2 2469 254 3 0 168 7 8 216 32 33 383 chain 41160 chr7 159138663 + 41598517 41599320 MER41C 542 - 13 542 67698 207 276 1 22 0 1 298 chain 20418 chr7 159138663 + 41598724 41598999 AluSc 308 + 32 304 125840 233 10 12 20 5 0 7 chain 44040 chr7 159138663 + 41793350 41793904 MER41A 554 - 0 554 64158 554 chain 44030 chr7 159138663 + 41799052 41799607 MER41A 554 - 0 554 64168 453 2 1 100 chain 43166 chr7 159138663 + 41809559 41810105 L1PA8 5853 + 5312 5853 65214 166 1 0 49 0 2 35 1 0 44 2 0 74 1 0 6 6 5 47 2 1 112 chain 14862 chr7 159138663 + 41867037 41867295 MER2 342 - 87 342 141745 28 5 9 63 4 0 44 1 2 22 25 21 66 chain 3292 chr7 159138663 + 41944267 41944343 L1ME1 1623 + 1453 1522 219139 38 24 17 14 chain 73089 chr7 159138663 + 41948547 41949549 MER11A 1151 - 15 1151 46988 148 6 7 60 0 1 29 24 29 26 0 26 10 0 1 112 3 4 35 0 3 101 0 7 9 7 1 83 0 1 149 4 0 66 1 0 50 0 99 79 chain 4536 chr7 159138663 + 41954844 41954897 MER87 546 - 397 450 200390 53 chain 23390 chr7 159138663 + 41976640 41977008 THE1A 353 + 0 353 113698 110 1 0 45 6 0 37 4 3 38 6 9 7 3 0 50 13 5 44 0 1 4 chain 30870 chr7 159138663 + 41977009 41977374 THE1A-int 1579 + 1 370 82736 86 1 2 181 0 3 97 chain 20943 chr7 159138663 + 42060292 42060517 AluY 311 + 85 311 124139 47 0 1 178 chain 16963 chr7 159138663 + 42095468 42095802 THE1B 368 + 0 368 135691 44 24 39 22 30 40 26 1 0 28 35 45 124 chain 8103 chr7 159138663 + 42122933 42123059 L1MA2 4263 - 149 267 170472 9 1 0 37 19 12 60 chain 50269 chr7 159138663 + 42141287 42141854 L1PA3long 6157 - 0 568 58811 150 1 2 416 chain 7615 chr7 159138663 + 42151977 42152170 L1MA3 4352 + 4114 4303 173440 53 56 57 11 4 0 12 0 3 10 2 0 22 1 0 6 1 0 15 chain 4320 chr7 159138663 + 42227681 42227889 MLT1C 463 + 234 459 202971 30 133 150 33 0 1 4 1 0 7 chain 9735 chr7 159138663 + 42228157 42228329 L1MC1 2226 + 1780 1959 161909 60 5 4 9 0 9 23 14 8 21 1 0 20 0 6 19 chain 19668 chr7 159138663 + 42231017 42231255 AluSp 311 + 48 288 128202 178 0 2 60 chain 3430 chr7 159138663 + 42241705 42241745 Tigger3a 397 - 322 362 216575 40 chain 6025 chr7 159138663 + 42258013 42258090 MADE1 96 + 3 96 185021 42 1 17 34 chain 9005 chr7 159138663 + 42304723 42305000 MLT1A 405 + 28 382 165565 27 8 9 13 137 213 92 chain 3025 chr7 159138663 + 42362310 42362483 L1M3c 1411 - 442 606 224464 24 121 112 28 chain 26549 chr7 159138663 + 42381609 42381992 L1PA8 5853 + 5477 5853 97843 87 1 0 44 2 0 70 2 1 13 13 12 36 2 1 19 2 1 92 chain 48899 chr7 159138663 + 42400201 42400804 L1PA7 6471 + 5846 6469 59807 205 0 1 154 0 3 86 0 2 8 4 21 128 3 0 15 chain 122705 chr7 159138663 + 42403293 42404847 THE1B-int 1605 - 9 1605 30161 455 5 7 370 4 17 142 1 0 4 0 1 144 1 26 92 0 2 336 chain 508440 chr7 159138663 + 42405050 42411175 L1PA6 6164 - 6 6164 6289 467 8 10 358 1 8 4 1 0 230 1 2 824 0 1 34 0 1 523 5 4 163 1 0 253 5 0 85 0 1 401 1 2 457 0 22 490 12 11 671 7 8 220 1 5 336 1 0 88 0 1 41 0 1 436 chain 3299 chr7 159138663 + 42415484 42415795 MLT1E1A 663 - 19 332 218997 6 0 2 19 175 171 32 65 69 14 chain 22755 chr7 159138663 + 42422228 42422571 THE1B 368 + 18 365 116804 22 0 5 36 10 11 80 2 1 18 3 1 12 3 0 5 5 8 79 0 1 68 chain 3322 chr7 159138663 + 42451259 42451297 MER63B 433 + 340 378 218538 38 chain 208326 chr7 159138663 + 42474091 42477769 L1PB1 5432 - 10 2931 18616 18 1 0 13 1 0 18 330 13 14 2 0 14 1 0 5 5 3 16 22 12 15 1 0 44 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 13 11 18 395 0 10 1 2 288 12 11 181 3 0 98 0 1 6 11 10 90 11 13 443 1 0 88 0 1 121 1 0 24 3 0 207 1 0 46 0 2 465 9 6 31 9 0 150 2 1 319 chain 36778 chr7 159138663 + 42544309 42544751 L1PA5 6144 - 1 443 73833 171 1 3 188 2 0 80 chain 20809 chr7 159138663 + 42568718 42568943 L1PA3long 6157 - 853 1078 124274 225 chain 76925 chr7 159138663 + 42568943 42569806 L1PA3long 6157 + 5288 6157 45010 135 0 1 580 1 6 147 chain 267377 chr7 159138663 + 42569925 42573486 L1PA11 4918 + 875 4414 15321 167 0 1 307 1 0 46 7 13 404 0 1 381 9 9 10 1 0 25 0 1 15 0 4 34 0 3 5 3 0 58 0 4 171 15 5 180 1 0 84 8 8 335 3 0 5 6 9 283 12 5 535 14 16 126 11 10 25 0 1 4 15 1 161 6 1 44 4 5 16 2 1 13 2 0 7 chain 61120 chr7 159138663 + 42580078 42580836 MER4E1 777 - 7 777 52288 41 0 1 175 4 12 48 1 0 160 3 7 225 0 1 71 8 7 22 chain 32922 chr7 159138663 + 42592428 42592890 MER1A 529 - 0 465 79333 55 42 45 365 chain 5148 chr7 159138663 + 42594073 42594148 MLT2B4 540 + 0 77 193569 16 3 5 56 chain 41589 chr7 159138663 + 42602966 42603711 L1PB1 5432 + 4721 5422 67170 15 0 1 105 0 1 87 9 3 32 1 0 138 3 0 14 10 1 20 8 6 12 2 0 3 2 0 9 2 0 25 0 4 23 2 1 16 2 1 43 40 27 18 28 23 21 1 0 22 1 0 12 1 0 18 chain 29328 chr7 159138663 + 42604644 42604964 AluYb8 318 - 0 318 87401 104 3 1 213 chain 540412 chr7 159138663 + 42620172 42626351 L1PA4 6152 - 6 6149 2751 138 1 2 739 16 8 594 0 1 725 0 1 429 1 2 240 0 2 61 0 1 2347 34 0 119 2 1 733 chain 3143 chr7 159138663 + 42628364 42628400 L1MEf 1413 - 1203 1239 222093 36 chain 87905 chr7 159138663 + 42639662 42640629 L1PA3long 6157 - 450 1417 40412 967 chain 41798 chr7 159138663 + 42640629 42641097 L1PA3long 6157 + 5690 6157 66904 462 1 0 5 chain 60215 chr7 159138663 + 42675928 42676706 HERVK9-int 4720 + 6 765 52721 17 25 13 13 13 9 66 1 0 8 1 0 30 1 0 147 1 0 220 0 1 235 chain 8779 chr7 159138663 + 42728739 42728851 MLT1A0 366 + 253 366 166771 84 0 1 28 chain 4284 chr7 159138663 + 42745857 42745903 MER61A 341 - 0 46 203434 46 chain 24088 chr7 159138663 + 42758053 42758403 THE1B 368 + 0 368 109810 13 7 11 20 0 15 109 1 0 4 14 14 108 1 0 21 0 1 52 chain 25318 chr7 159138663 + 42758616 42759408 MER50 708 - 31 708 103133 115 444 338 120 0 1 44 1 0 8 9 0 51 chain 29175 chr7 159138663 + 42770792 42771170 THE1C 375 + 0 375 88178 122 3 0 71 3 4 152 1 0 26 chain 138220 chr7 159138663 + 42787531 42789108 L1PA5 6144 - 4 1587 26447 141 4 5 1358 0 5 74 chain 36453 chr7 159138663 + 42798807 42799308 MER75 514 + 4 514 74291 13 1 2 104 7 14 341 10 11 25 chain 2938 chr7 159138663 + 42808883 42808914 MER63A 208 + 177 208 226382 31 chain 8104 chr7 159138663 + 42825743 42825831 L1PA3long 6157 - 2641 2729 168970 88 chain 239886 chr7 159138663 + 42825831 42828466 L1PA3long 6157 + 3520 6157 16785 1154 0 1 105 0 1 1376 chain 21502 chr7 159138663 + 42835802 42836045 L1PA3long 6157 + 5906 6149 122138 243 chain 400957 chr7 159138663 + 42836553 42841923 L1PA8 5853 + 516 5850 10055 252 4 5 236 130 126 13 2 11 747 0 2 118 1 0 265 5 6 32 6 9 58 1 0 398 0 6 37 0 5 541 0 2 321 0 1 582 6 7 4 1 0 179 0 1 112 0 1 231 0 1 179 1 5 125 101 22 48 0 1 357 1 0 45 21 19 52 2 1 9 2 1 47 17 33 81 chain 7052 chr7 159138663 + 42841149 42841230 L1PA8 5853 + 4051 4132 177087 81 chain 250755 chr7 159138663 + 42847393 42851762 L1PB1 5432 + 1709 5423 16196 106 1 0 104 3 0 7 0 3 166 2 1 102 70 65 233 1 0 28 0 1 41 25 29 23 324 10 845 0 2 234 12 16 7 4 0 230 0 1 74 20 20 56 18 17 166 0 1 89 27 0 52 1 0 7 7 13 88 1 0 76 5 0 187 0 10 23 1 2 149 294 4 97 13 14 6 3 0 20 1 0 10 1 0 14 5 1 8 3 1 49 21 19 45 1 0 15 1 0 6 44 30 14 2 0 24 1 0 22 9 8 4 1 0 14 1 0 5 chain 15530 chr7 159138663 + 42868131 42868315 L1PA5 6144 - 0 177 139800 147 7 0 30 chain 530397 chr7 159138663 + 42898764 42905484 L1PA7 6471 - 17 6468 4142 39 0 4 794 0 3 200 1 0 104 0 6 5 1 0 101 0 1 217 0 1 24 1 0 126 1 0 4 0 1 54 0 22 169 0 1 4 1 0 252 0 3 489 0 1 153 0 1 83 0 1 43 0 4 16 1 2 76 0 4 805 18 0 487 305 0 1202 0 1 235 0 1 98 0 1 212 0 1 30 7 6 4 0 1 151 1 2 206 chain 25389 chr7 159138663 + 42909835 42910144 AluY 311 + 0 303 102740 126 6 0 177 chain 40474 chr7 159138663 + 42910174 42910655 LTR7 482 - 0 482 68629 49 12 14 81 2 1 337 chain 297752 chr7 159138663 + 42911905 42915520 HERVH-int 3825 - 0 3825 13538 376 1 4 6 3 0 101 8 218 290 0 1 375 1 0 429 0 10 299 4 31 462 15 0 444 0 1 48 2 1 7 0 20 45 22 0 19 20 0 7 3 0 12 2 15 24 1 0 10 65 0 30 0 56 484 chain 41474 chr7 159138663 + 42915522 42916003 LTR7 482 - 0 482 67319 49 12 14 77 1 0 342 chain 4100 chr7 159138663 + 42917670 42917723 MER52A 1651 + 779 831 205950 11 1 0 41 chain 216049 chr7 159138663 + 42935893 42939212 L1PB1 5432 + 2500 5430 18111 142 0 9 91 0 6 46 15 18 30 1 0 210 9 1 368 0 1 99 0 1 208 1 2 112 1 0 353 11 10 423 4 0 35 1 0 98 0 1 250 6 0 89 437 67 50 2 1 16 1 0 32 1 0 11 1 0 23 13 5 19 8 5 10 3 4 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 15820 chr7 159138663 + 42960408 42960742 L1MA4 2864 + 2501 2801 138891 19 0 2 147 3 0 24 3 0 5 108 78 25 chain 16633 chr7 159138663 + 42985439 42985639 MER107 203 - 0 203 136579 24 0 3 176 chain 36644 chr7 159138663 + 42987541 42988170 LTR24C 604 + 1 604 74034 46 2 1 47 1 16 33 1 0 31 1 0 3 19 0 147 2 3 27 0 5 11 53 38 18 4 0 101 6 5 57 5 0 14 chain 4046 chr7 159138663 + 42994709 42994756 MER49 923 - 191 238 206695 47 chain 16843 chr7 159138663 + 43007436 43007737 THE1B 368 + 0 306 136008 81 4 5 83 2 0 5 49 56 12 8 7 57 chain 28038 chr7 159138663 + 43014200 43014594 LTR19B 566 + 0 566 92866 176 18 190 94 19 18 34 0 1 53 chain 42860 chr7 159138663 + 43015378 43015890 THE1D-int 1627 - 1104 1615 65584 486 1 0 25 chain 18738 chr7 159138663 + 43015903 43016262 THE1D 372 - 0 364 130861 32 1 0 146 90 97 40 5 4 45 chain 16189 chr7 159138663 + 43018612 43018801 L1PB1 5432 + 4621 4812 137787 85 0 2 104 chain 21498 chr7 159138663 + 43018832 43019094 L1PB1 5432 + 4841 5103 122151 205 0 1 5 1 0 51 chain 5413 chr7 159138663 + 43019106 43019243 L1PB1 5432 + 5122 5253 190859 16 1 0 9 16 11 9 2 0 26 6 10 17 3 2 15 2 1 15 chain 5092 chr7 159138663 + 43044470 43044528 L1MB3 1562 - 380 438 194158 58 chain 29612 chr7 159138663 + 43045881 43046385 PRIMA4_LTR 623 - 12 623 86172 56 14 5 97 28 110 75 6 8 11 0 2 5 0 5 39 40 65 133 chain 51313 chr7 159138663 + 43088036 43088756 L1MA3 4352 + 22 740 58098 15 1 0 37 3 1 80 1 0 20 5 0 31 0 4 78 6 8 196 11 12 236 chain 553958 chr7 159138663 + 43098695 43104715 L1PA2 6032 + 3 6031 956 314 1 0 577 1 0 3642 0 9 1150 0 1 335 chain 5677 chr7 159138663 + 43110611 43110696 MER4D 903 - 19 103 188327 15 1 0 22 0 1 16 6 5 25 chain 270101 chr7 159138663 + 43111401 43116735 MER61-int 3695 - 17 3695 15179 84 6 5 206 0 9 20 4 1 170 0 2 24 1 0 11 9 1 122 531 0 37 0 1 87 0 1 5 55 51 9 0 1 63 1 0 153 3 1 74 0 2 117 0 1 35 0 1 181 547 0 17 0 3 26 0 2 23 0 1 503 0 5 84 11 13 50 2 1 41 1 0 182 0 1 75 1 0 101 1 0 117 0 2 90 15 20 147 0 1 44 1 0 12 2 0 98 45 27 105 1 2 138 4 3 68 569 1 154 1 0 8 2 0 6 6 4 28 chain 41876 chr7 159138663 + 43112066 43112587 HERV1_LTRa 508 - 6 508 66795 32 4 0 219 15 1 208 1 0 42 chain 45368 chr7 159138663 + 43113423 43113956 L1PA7 6471 + 5935 6469 62637 381 1 2 151 chain 5167 chr7 159138663 + 43120753 43120852 MER82 654 - 127 226 193378 15 24 18 6 0 6 54 chain 8425 chr7 159138663 + 43126901 43127021 L1PB4 2604 + 2407 2528 168709 69 5 6 46 chain 8735 chr7 159138663 + 43136330 43136438 HY1 111 + 0 108 167002 108 chain 15483 chr7 159138663 + 43143066 43143340 THE1D 372 - 57 357 139946 91 53 80 40 5 4 85 chain 9192 chr7 159138663 + 43164563 43164790 MLT1A0 366 - 29 268 164599 64 102 114 61 chain 4275 chr7 159138663 + 43180331 43180402 MLT1B 390 - 35 109 203540 11 9 12 51 chain 17966 chr7 159138663 + 43198787 43198998 L1PA6 6164 - 2 213 132947 211 chain 3775 chr7 159138663 + 43234020 43234060 U7 62 + 1 41 210731 40 chain 58895 chr7 159138663 + 43250091 43250835 LTR17 781 - 12 781 53464 32 0 22 388 1 0 111 5 0 88 5 14 114 chain 39835 chr7 159138663 + 43258387 43258995 LTR9B 643 - 15 632 69570 32 7 8 65 0 4 40 65 67 85 8 7 110 10 9 15 0 1 112 0 3 59 chain 35134 chr7 159138663 + 43259002 43259479 LTR2 463 - 0 463 76015 224 44 29 85 0 1 124 chain 4500 chr7 159138663 + 43261606 43261661 MER5A1 166 + 87 142 200783 55 chain 26560 chr7 159138663 + 43271333 43271641 AluY 311 + 0 303 97804 118 1 0 8 4 0 177 chain 41996 chr7 159138663 + 43275977 43276574 MER4A 717 - 32 717 66629 34 29 41 200 1 41 82 0 38 128 3 0 75 0 1 45 chain 22529 chr7 159138663 + 43279668 43279939 AluY 311 + 9 285 117899 122 8 13 141 chain 2979 chr7 159138663 + 43305115 43305149 MADE2 80 + 40 74 225466 34 chain 25077 chr7 159138663 + 43305946 43306232 AluSg7 307 - 21 307 104426 286 chain 13751 chr7 159138663 + 43316939 43317122 MER107 203 - 0 186 145436 23 1 4 159 chain 25503 chr7 159138663 + 43328700 43329003 AluSc5 308 - 9 308 102209 34 4 0 265 chain 34284 chr7 159138663 + 43330674 43331285 LTR10E 629 - 0 629 77233 7 1 0 52 20 17 23 1 0 18 32 34 12 45 40 78 2 1 50 8 34 95 11 13 139 1 0 16 chain 28773 chr7 159138663 + 43332444 43333190 MER51A 677 - 16 677 90006 78 12 4 8 312 0 166 13 239 11 14 23 132 chain 26084 chr7 159138663 + 43370599 43370894 L1PA5 6144 - 13 308 99691 295 chain 50974 chr7 159138663 + 43380300 43380911 L1PA6 6164 + 5547 6157 58329 443 20 19 148 chain 90591 chr7 159138663 + 43382873 43383927 L1PA6 6164 - 2 1068 39434 153 14 17 349 0 8 38 0 1 10 0 1 270 1 0 219 chain 12589 chr7 159138663 + 43411957 43412122 L1PA5 6144 - 2 153 149885 7 4 0 54 10 0 90 chain 2753 chr7 159138663 + 43419969 43420080 L1ME3A 1206 - 107 247 229454 20 64 93 27 chain 70720 chr7 159138663 + 43422376 43423275 L1PA8 5853 - 0 896 48060 93 1 0 19 2 1 49 1 0 12 2 1 70 2 0 38 12 11 44 1 0 506 1 6 46 chain 52673 chr7 159138663 + 43430346 43431006 PABL_A 660 + 0 660 57201 61 6 1 6 0 5 54 1 0 151 0 1 381 chain 31078 chr7 159138663 + 43437022 43437462 LTR7B 505 - 14 505 82382 11 2 0 5 0 1 17 17 16 143 0 1 45 23 44 84 0 31 93 chain 421231 chr7 159138663 + 43452062 43456651 L1PA2 6032 - 11 6030 9506 2515 1 1430 1891 0 1 182 chain 50134 chr7 159138663 + 43459310 43459899 LTR10C 591 - 0 591 58919 73 2 3 4 0 1 510 chain 3756 chr7 159138663 + 43461732 43461795 MADE1 96 - 16 96 211021 14 0 1 18 7 23 24 chain 27863 chr7 159138663 + 43471744 43472037 AluYa5 310 - 17 310 93483 293 chain 33276 chr7 159138663 + 43525459 43525888 L1PA7 6471 - 1 421 78762 296 10 1 123 chain 23767 chr7 159138663 + 43534716 43535007 L1PA7 6471 - 4 295 111669 17 1 0 134 3 4 136 chain 4221 chr7 159138663 + 43669730 43669781 MER58A 224 + 171 222 204293 51 chain 3704 chr7 159138663 + 43693322 43693364 MADE1 96 - 54 96 211885 42 chain 140936 chr7 159138663 + 43706493 43708540 HUERS-P3b-int 2065 + 13 1975 25994 81 3 0 194 0 1 5 80 20 115 0 1 36 0 3 113 11 10 12 1 5 27 0 3 44 10 6 50 1 0 34 0 1 54 2 1 17 5 4 68 0 1 301 0 1 106 0 3 39 6 0 19 1 2 17 0 1 63 1 0 44 29 2 82 0 2 13 1 0 25 1 0 89 3 1 73 2 0 8 0 1 9 4 1 16 0 11 36 4 0 58 1 0 33 chain 34472 chr7 159138663 + 43708812 43709360 LTR9B 643 + 0 561 76953 13 1 0 24 0 4 18 2 1 49 0 4 87 22 25 108 1 0 89 47 49 29 7 0 10 0 10 41 chain 92430 chr7 159138663 + 43711692 43713447 L1PA15 4387 + 2089 4350 38836 14 30 26 10 0 2 71 2 7 86 1 2 20 0 1 103 9 14 48 323 821 275 0 1 35 5 8 71 0 1 38 0 5 65 5 14 60 5 3 43 1 0 171 2 1 25 1 0 45 0 2 6 10 7 17 4 0 9 4 3 45 12 9 41 3 1 14 5 0 21 chain 38698 chr7 159138663 + 43714754 43715209 L1PA4 6152 + 5715 6151 71151 244 19 0 192 chain 15204 chr7 159138663 + 43715901 43716277 L1MA5A 2387 + 1947 2360 140766 48 0 1 37 1 0 36 2 0 38 1 0 10 39 45 6 0 2 5 2 0 6 1 0 34 7 65 13 64 41 6 1 0 15 0 1 4 chain 27747 chr7 159138663 + 43725904 43726192 AluYd8 298 - 10 298 93876 288 chain 28526 chr7 159138663 + 43727441 43727795 THE1A 353 + 0 352 91070 110 1 0 92 1 0 150 chain 11790 chr7 159138663 + 43735523 43736026 THE1D 372 - 0 372 153095 25 1 0 7 30 28 48 225 98 32 0 2 37 1 0 9 51 49 37 chain 23144 chr7 159138663 + 43755389 43755732 THE1B 368 + 13 366 114919 34 0 1 63 6 22 11 0 1 24 31 24 100 1 0 73 chain 84053 chr7 159138663 + 43774189 43775132 LTR13A 966 - 0 939 41882 296 4 0 643 chain 8809 chr7 159138663 + 43788694 43788797 MSTA 426 - 13 116 166604 103 chain 548744 chr7 159138663 + 43812739 43818886 L1PA4 6152 - 1 6146 1610 1121 0 1 1846 1 0 2308 0 2 31 17 0 266 1 0 419 1 15 136 chain 37639 chr7 159138663 + 43849810 43850249 LTR10F 562 + 0 553 72636 122 0 115 202 1 0 114 chain 15771 chr7 159138663 + 43852862 43853133 LTR10F 562 + 1 368 139052 75 0 5 24 7 62 63 0 24 12 36 47 30 1 2 23 chain 16463 chr7 159138663 + 43853143 43853331 LTR10F 562 + 374 562 137030 188 chain 198089 chr7 159138663 + 43856334 43859074 HERVIP10FH-int 2884 + 149 2876 19350 59 1 0 5 6 0 184 13 1 117 0 5 69 0 2 11 0 5 20 1 0 94 0 1 485 1 0 173 14 8 11 1 0 7 1 0 56 12 8 118 7 216 246 3 2 198 1 0 24 1 0 129 1 2 5 1 0 111 1 0 117 1 0 66 2 1 50 1 0 17 1 0 13 11 5 34 207 23 8 2 0 16 2 0 5 chain 32185 chr7 159138663 + 43859133 43859575 LTR10F 562 + 0 562 80554 25 8 12 69 0 1 39 0 108 12 5 11 183 0 1 101 chain 203479 chr7 159138663 + 43859997 43862978 HERVIP10FH-int 2884 + 149 2866 18961 40 1 6 13 4 0 509 0 1 215 0 2 16 0 1 230 0 1 21 2 0 179 4 1 4 3 0 11 1 0 7 1 0 63 13 6 121 2 0 17 43 26 12 41 18 43 22 10 37 16 5 20 3 2 34 0 5 225 1 0 176 0 4 19 9 8 17 1 0 257 1 5 102 1 0 66 2 1 50 1 0 18 1 0 12 10 4 35 207 22 9 2 0 11 chain 36899 chr7 159138663 + 43863049 43863496 LTR10F 562 + 0 562 73661 116 0 115 331 chain 39592 chr7 159138663 + 43864111 43864571 LTR2 463 + 0 463 69898 203 0 1 45 0 1 118 0 1 94 chain 9202 chr7 159138663 + 43865663 43865883 AluJr4 308 - 43 168 164546 99 95 0 26 chain 98381 chr7 159138663 + 43866710 43869063 HUERS-P1-int 2401 + 148 2139 37197 4 1 0 14 9 4 31 18 0 4 39 0 24 2 1 12 6 1 34 4 0 14 11 8 12 33 22 12 6 1 13 24 0 13 1 0 13 1 0 43 11 7 35 1 0 11 2 0 24 2 0 7 16 0 22 3 0 14 61 48 96 6 0 23 0 8 104 11 3 42 0 1 134 1 0 12 1 0 7 2 0 48 2 1 19 0 1 23 8 6 8 1 0 5 0 2 18 2 0 3 1 0 80 2 0 28 27 12 75 0 2 23 2 0 12 1 0 12 2 1 40 2 0 8 13 12 73 2 1 86 19 10 17 2 0 10 4 0 28 40 27 7 3 0 15 2 0 16 3 2 18 9 0 17 219 119 4 1 0 10 1 0 12 2 1 18 10 11 8 1 0 14 5 0 6 18 18 23 7 5 10 15 6 4 1 0 9 1 0 7 1 0 47 2 0 15 chain 43904 chr7 159138663 + 43871762 43872505 LTR8 732 + 0 732 64329 19 10 20 118 0 7 76 0 2 39 40 67 100 1 0 54 0 5 19 14 11 32 75 17 82 0 1 23 1 0 40 chain 19778 chr7 159138663 + 43896848 43897202 THE1B 368 + 0 362 127880 83 0 2 26 6 7 51 1 0 6 58 65 66 7 6 50 chain 106887 chr7 159138663 + 43897208 43899294 THE1B-int 1605 + 0 1605 35006 110 15 19 264 0 1 38 7 32 49 641 0 160 0 2 7 2 0 322 0 3 127 10 142 134 10 0 109 0 5 81 chain 39883 chr7 159138663 + 43899297 43899792 MER9a3 513 - 0 513 69481 79 0 1 122 1 15 40 1 0 78 0 1 66 0 1 90 0 2 18 chain 301253 chr7 159138663 + 43899795 43903460 HERVK9-int 4720 - 2 4649 13360 689 0 1 720 1 0 8 0 1 26 13 16 370 0 978 65 0 1 4 2 1 373 5 6 58 0 2 145 1 0 645 1 2 433 17 16 26 16 14 47 chain 34119 chr7 159138663 + 43904091 43904584 MER9a3 513 - 0 513 77453 79 0 1 67 12 0 60 0 10 21 0 17 66 12 13 68 10 11 85 0 2 13 chain 23529 chr7 159138663 + 43949374 43949655 AluSp 311 + 15 295 112966 97 1 0 183 chain 3159 chr7 159138663 + 43974751 43974842 MIRc 230 - 58 145 221753 26 45 41 20 chain 88952 chr7 159138663 + 43986483 43987863 L1PA6 6164 - 2 1070 40024 139 7 8 93 307 0 282 9 6 24 6 1 115 0 1 95 0 1 303 chain 23788 chr7 159138663 + 43998416 43998717 AluSp 311 + 1 305 111543 63 7 9 16 0 1 215 chain 11704 chr7 159138663 + 44006266 44006422 L1P5 443 + 192 353 153448 48 1 3 75 0 3 32 chain 6599 chr7 159138663 + 44033780 44033856 AluSp 311 + 30 106 180462 76 chain 77309 chr7 159138663 + 44059665 44060638 LTR13 1007 + 0 1007 44828 73 2 0 52 0 2 114 0 2 22 1 0 116 4 5 90 0 26 192 3 1 94 13 15 8 0 1 95 0 5 94 chain 3280 chr7 159138663 + 44123307 44123343 L1MC 810 - 334 370 219344 36 chain 21137 chr7 159138663 + 44160122 44160494 THE1D 372 + 0 372 123421 58 8 7 39 1 0 34 15 9 13 8 9 11 0 1 4 4 9 12 16 18 31 1 0 117 chain 7409 chr7 159138663 + 44167108 44167319 L1M4c 1769 - 1370 1563 174717 40 71 73 33 21 1 46 chain 196307 chr7 159138663 + 44237767 44239944 L1PA4 6152 - 406 2591 19481 1105 0 5 284 0 4 406 0 1 251 0 2 17 10 6 104 chain 35206 chr7 159138663 + 44239944 44240325 L1PA4 6152 + 5771 6152 75913 381 chain 25070 chr7 159138663 + 44292800 44293101 AluSp 311 - 6 301 104458 12 2 0 35 4 0 248 chain 234874 chr7 159138663 + 44394218 44398288 L1PA14 3548 - 216 3454 17038 113 1 0 82 1 0 6 2 0 16 2 0 5 2 0 79 6 7 19 2 0 5 19 17 30 2 0 10 7 5 17 2 1 232 1 0 152 2 1 23 42 0 59 0 5 77 0 3 320 323 6 188 4 0 231 0 3 77 2 0 17 0 1 6 0 4 18 1 2 20 21 23 311 8 0 146 368 49 91 131 0 61 2 4 143 0 2 187 5 0 159 4 2 29 16 14 16 13 12 9 1 0 7 19 20 42 5 1 53 chain 22466 chr7 159138663 + 44396970 44397254 AluSg7 307 - 11 297 118166 146 1 2 20 1 2 116 chain 6357 chr7 159138663 + 44413443 44413524 L1MB3 1562 + 1443 1524 182328 81 chain 3293 chr7 159138663 + 44444745 44444783 tRNA-Gly-GGA 38 - 0 38 219136 38 chain 479119 chr7 159138663 + 44458761 44464907 L1PA8 5853 + 50 5853 7759 21 2 0 12 1 0 9 52 16 70 0 1 121 20 8 255 10 11 25 0 4 30 0 6 10 7 0 86 1 0 482 1 0 17 1 2 236 0 1 411 311 0 134 9 0 203 1 0 53 0 4 58 7 36 505 7 5 52 0 4 282 0 1 104 8 0 117 0 3 889 1 0 439 0 1 232 0 2 76 0 2 259 4 0 219 1 0 44 2 0 71 1 0 6 8 0 8 1 8 39 2 1 19 1 0 93 chain 3394 chr7 159138663 + 44465583 44465621 tRNA-Ile-ATA 38 + 0 38 217217 38 chain 26561 chr7 159138663 + 44495374 44495653 AluYa5 310 + 31 310 97802 279 chain 8601 chr7 159138663 + 44497062 44497194 L1MB7 1623 + 34 167 167725 82 1 3 16 5 4 28 chain 8527 chr7 159138663 + 44510764 44510912 MER2 342 - 47 197 168153 37 9 1 22 0 7 30 6 9 44 chain 25207 chr7 159138663 + 44546544 44546899 THE1B 368 - 0 366 103702 75 7 6 95 2 0 8 1 0 5 0 1 6 1 0 106 7 22 42 chain 3040 chr7 159138663 + 44570077 44570123 L1MB3 1562 + 1506 1551 224199 16 2 1 28 chain 20908 chr7 159138663 + 44574705 44574979 AluSp 311 + 14 298 124249 29 1 10 138 6 7 100 chain 10465 chr7 159138663 + 44586588 44586715 L1P3 4156 + 5 132 158409 127 chain 8614 chr7 159138663 + 44592329 44592494 LTR14B 630 + 235 452 167662 39 21 53 33 0 10 30 19 29 23 chain 12165 chr7 159138663 + 44625619 44625795 MER30 238 + 0 235 151556 15 8 39 46 0 25 27 0 6 41 3 0 36 chain 11182 chr7 159138663 + 44651521 44651647 L1PA5 6144 - 0 126 155502 126 chain 16076 chr7 159138663 + 44660242 44660465 MER30 238 + 0 238 138131 107 4 0 13 2 18 52 0 3 45 chain 23852 chr7 159138663 + 44680494 44680789 AluSc5 308 - 12 298 111177 173 9 0 113 chain 4745 chr7 159138663 + 44689934 44690066 MIR 256 + 21 159 197967 14 30 32 49 3 4 12 13 16 11 chain 25932 chr7 159138663 + 44739264 44739665 MSTB 430 - 0 430 100291 65 0 3 100 11 9 39 5 3 7 0 9 12 1 2 58 0 1 6 4 25 40 1 0 25 3 2 24 chain 23199 chr7 159138663 + 44741370 44741686 AluSp 311 + 11 298 114682 42 29 0 245 chain 28985 chr7 159138663 + 44744638 44744950 AluYa5 310 - 0 310 89068 5 2 0 305 chain 22023 chr7 159138663 + 44755419 44755687 AluSp 311 - 34 301 120125 145 1 0 122 chain 4655 chr7 159138663 + 44756252 44756315 MER84 505 - 58 121 199014 34 1 0 9 0 1 19 chain 33561 chr7 159138663 + 44756625 44757045 MER41A 554 - 127 554 78304 39 0 1 212 0 7 75 0 1 42 2 0 50 chain 118663 chr7 159138663 + 44757870 44760943 MER41-int 2638 - 246 2082 31547 14 0 1 151 4 6 99 0 2 17 1 0 54 8 4 32 2 0 137 2 0 20 293 0 111 0 1 10 789 140 39 313 1 124 0 10 99 1 0 53 0 5 311 0 2 79 0 1 45 2 15 73 7 9 49 1 0 16 17 6 64 1 0 4 0 1 31 chain 4624 chr7 159138663 + 44763603 44763694 MER84 505 - 268 362 199362 40 26 29 25 chain 22267 chr7 159138663 + 44777373 44777659 AluSx4 309 + 5 292 119047 135 12 13 139 chain 4222 chr7 159138663 + 44787265 44787366 L1MB3 1562 + 1268 1369 204266 30 34 35 17 1 0 19 chain 41771 chr7 159138663 + 44818393 44818924 MLT2A2 560 - 0 560 66941 147 0 11 13 0 1 98 4 17 221 0 4 48 chain 23064 chr7 159138663 + 44828549 44828825 AluSp 311 + 9 287 115329 12 0 2 75 0 1 26 1 0 162 chain 25030 chr7 159138663 + 44828845 44829146 AluYf4 310 + 10 293 104639 202 0 1 66 19 0 14 chain 15380 chr7 159138663 + 44829148 44829317 AluY 311 + 127 296 140260 169 chain 6441 chr7 159138663 + 44847258 44847335 L1PA8A 6298 + 6214 6291 181702 77 chain 23289 chr7 159138663 + 44852810 44853083 AluSp 311 + 16 286 114260 67 3 0 203 chain 24220 chr7 159138663 + 44853850 44854124 AluSp 311 - 26 300 109091 274 chain 23881 chr7 159138663 + 44857261 44857552 AluSp 311 + 3 298 111015 265 0 4 26 chain 3126 chr7 159138663 + 44866401 44866436 Charlie22a 388 - 58 93 222434 35 chain 24846 chr7 159138663 + 44878993 44879289 AluY 311 + 0 291 105642 126 5 0 165 chain 4530 chr7 159138663 + 44905375 44905469 MER65D 500 + 417 500 200458 25 17 10 18 1 0 21 3 0 9 chain 13324 chr7 159138663 + 44905469 44905624 MER6 865 - 88 243 146988 155 chain 153820 chr7 159138663 + 44909929 44912204 SVA_A 1864 - 3 1849 24110 150 4 5 424 39 0 37 119 0 100 1 0 123 80 0 38 4 1 96 1 0 30 1 4 34 39 0 13 37 0 3 2 0 28 37 0 8 0 2 149 2 0 80 75 0 521 chain 2412 chr7 159138663 + 44910507 44910544 SVA_A 1864 - 619 656 52361 37 chain 7627 chr7 159138663 + 44910583 44910700 SVA_A 1864 - 729 840 52361 40 3 0 35 3 0 36 chain 5215 chr7 159138663 + 44910926 44911006 SVA_A 1864 - 1063 1102 52361 1 4 1 26 37 0 10 1 0 1 chain 1530 chr7 159138663 + 44910964 44910994 SVA_A 1864 - 1287 1317 187003 30 chain 2216 chr7 159138663 + 44911210 44911244 SVA_A 1864 - 1269 1303 52361 34 chain 2412 chr7 159138663 + 44911262 44911299 SVA_A 1864 - 1361 1398 52361 37 chain 1825 chr7 159138663 + 44911341 44911369 SVA_A 1864 - 1403 1431 52361 28 chain 2236 chr7 159138663 + 44911608 44911647 SVA_A 1864 - 1101 1140 81220 39 chain 1296 chr7 159138663 + 44911649 44911683 SVA_A 1864 - 955 988 69198 24 1 0 9 chain 25683 chr7 159138663 + 44950940 44951239 AluY 311 + 3 303 101363 129 0 1 170 chain 45053 chr7 159138663 + 44962252 44963084 MER9a1 513 - 0 506 62992 140 326 0 366 chain 29909 chr7 159138663 + 44962402 44962718 AluYb8 318 - 2 318 85070 316 chain 9740 chr7 159138663 + 44980510 44980646 L1MC2 1988 + 426 580 161890 23 6 23 11 0 1 96 chain 3038 chr7 159138663 + 45008633 45008665 MER5A1 166 + 43 75 224262 32 chain 24543 chr7 159138663 + 45027865 45028175 AluSp 311 + 0 302 107294 56 9 1 245 chain 57174 chr7 159138663 + 45031654 45032304 SVA_B 1603 - 0 893 54422 155 0 2 357 0 241 138 chain 7436 chr7 159138663 + 45032343 45032440 MER34C_ 573 - 433 542 174545 17 0 12 80 chain 6181 chr7 159138663 + 45089500 45089579 MER2 342 + 131 213 183725 53 0 3 26 chain 26302 chr7 159138663 + 45097933 45098222 L1PA4 6152 - 14 303 98822 289 chain 45337 chr7 159138663 + 45181086 45181613 L1PA5 6144 - 0 524 62676 9 3 0 515 chain 2969 chr7 159138663 + 45205552 45205660 L1MB7 1623 - 204 320 225687 31 43 52 11 7 6 16 chain 26018 chr7 159138663 + 45207157 45207484 AluSp 311 - 7 311 99953 122 11 0 5 12 0 177 chain 17934 chr7 159138663 + 45232043 45232320 LOR1a 498 - 0 274 133019 45 1 0 27 1 0 42 38 37 123 chain 4159 chr7 159138663 + 45240886 45240936 LTR8A 794 - 714 764 205106 50 chain 21051 chr7 159138663 + 45272487 45272832 MER65A 464 - 107 464 123724 105 0 1 4 26 25 27 1 0 70 7 11 52 0 8 13 7 8 33 chain 4064 chr7 159138663 + 45292073 45292120 MLT1A0 366 - 45 92 206426 47 chain 15202 chr7 159138663 + 45297380 45297588 L1PA8 5853 + 5648 5853 140769 30 2 1 61 2 1 19 2 1 92 chain 93896 chr7 159138663 + 45301917 45302990 MER11C 1089 + 1 1073 38387 568 1 0 504 chain 3813 chr7 159138663 + 45328590 45328633 MER4A1 472 + 0 43 210191 43 chain 89081 chr7 159138663 + 45328633 45329849 MER4-int 2692 + 1433 2692 39974 32 2 3 127 0 1 156 0 1 4 0 1 4 0 1 4 1 0 118 5 4 116 0 1 12 2 0 135 0 12 37 0 1 8 10 15 37 6 9 12 10 0 175 4 3 51 2 0 48 4 37 94 chain 31454 chr7 159138663 + 45329857 45330310 MER4A1 472 + 0 472 81727 82 4 3 99 30 48 160 9 11 69 chain 7105 chr7 159138663 + 45331492 45331618 MER41B 635 + 510 635 176728 47 31 30 48 chain 11978 chr7 159138663 + 45350430 45350813 L1M2 1805 - 1227 1590 152294 23 1 0 5 0 1 15 48 46 32 18 14 25 1 0 10 1 0 9 14 12 64 90 80 27 chain 535842 chr7 159138663 + 45354888 45361018 L1PA5 6144 + 0 6139 3467 750 10 11 474 0 1 1863 0 1 874 0 1 143 1 0 1004 0 1 171 1 5 701 1 2 137 chain 468580 chr7 159138663 + 45372855 45378607 L1PA8 5853 + 108 5853 8090 100 15 16 77 26 14 830 5 4 370 3 4 392 4 3 103 2 0 74 1 0 128 0 29 632 1 0 124 1 0 115 2 0 437 16 1 843 10 1 39 10 22 543 0 2 553 1 0 45 2 0 73 14 12 46 2 1 19 2 1 92 chain 15288 chr7 159138663 + 45391992 45392204 Tigger3a 397 - 75 336 140519 179 19 68 14 chain 7405 chr7 159138663 + 45415595 45415674 L1PA4 6152 + 6072 6151 174741 79 chain 539929 chr7 159138663 + 45417106 45423127 L1PA3long 6157 - 0 6156 2823 14 6 0 655 0 4 107 0 12 330 1 0 4126 0 128 617 11 12 146 3 0 5 chain 14552 chr7 159138663 + 45423453 45424103 L1MA8 2339 - 299 601 142724 30 4 3 11 362 28 11 2 0 31 10 4 17 23 28 20 6 0 17 4 0 102 chain 6188 chr7 159138663 + 45464708 45464860 MER20 218 - 18 188 183667 33 16 31 17 15 16 10 19 21 42 chain 89349 chr7 159138663 + 45478652 45480106 L1MA1 4479 + 2804 4190 39862 62 1 0 82 28 27 10 2 0 17 17 18 100 6 7 14 0 1 14 1 0 19 4 0 35 0 2 39 1 0 12 6 0 118 12 8 85 0 1 45 1 0 31 0 1 163 1 0 24 2 0 16 1 0 10 0 1 60 1 0 8 9 6 19 1 0 47 5 0 41 1 0 4 31 3 120 0 3 28 6 4 18 61 48 15 chain 528100 chr7 159138663 + 45502043 45508231 L1PA4 6152 - 0 6142 4394 6 0 5 101 1 2 733 1 5 147 0 9 360 1 2 427 0 4 612 73 0 230 1 0 2100 0 4 174 1 0 455 9 10 756 chain 300317 chr7 159138663 + 45530501 45534523 L1PA10 4194 - 33 4019 13405 11 1 0 33 4 1 103 0 1 222 1 2 136 2 1 217 1 0 168 0 1 40 1 0 129 0 7 128 1 0 243 0 12 49 1 0 130 1 3 289 5 9 379 0 5 193 0 2 31 1 2 107 0 1 48 10 7 378 7 0 135 2 1 51 1 0 56 8 7 4 0 1 328 4 2 68 0 2 15 1 0 8 7 0 13 1 0 7 0 3 9 1 0 10 1 0 18 2 0 13 0 1 8 45 19 8 1 0 15 2 0 21 1 0 6 46 37 6 3 0 11 1 0 15 chain 3671 chr7 159138663 + 45577500 45577540 MLT2D 439 - 8 48 212362 40 chain 14194 chr7 159138663 + 45585133 45585345 HERVL-int 5654 + 5363 5573 143902 64 1 8 104 15 6 28 chain 178959 chr7 159138663 + 45585350 45587895 HERVL-int 5654 - 3395 5654 21075 46 1 2 107 0 1 56 0 1 45 7 10 312 0 2 262 0 7 399 1 5 7 0 6 116 0 5 232 0 9 31 1 10 237 340 0 226 0 6 119 chain 33688 chr7 159138663 + 45587895 45588336 MLT2A1 477 - 0 477 78111 56 4 36 61 1 0 151 1 5 25 1 2 141 chain 21705 chr7 159138663 + 45588336 45588644 HERVL-int 5654 - 0 309 121372 109 15 6 91 8 15 70 1 4 14 chain 264936 chr7 159138663 + 45588993 45592105 HERVL-int 5654 + 2539 5654 15445 445 1 0 1110 0 1 477 0 1 653 0 1 207 0 1 63 2 1 22 0 1 132 chain 24909 chr7 159138663 + 45592105 45592419 MLT2A1 477 + 0 319 105285 141 1 2 26 1 5 145 chain 76393 chr7 159138663 + 45592422 45593648 L1PA15 4387 + 3136 4366 45269 32 2 0 234 0 1 87 16 15 67 27 40 109 8 18 74 2 8 6 4 0 6 0 1 55 11 9 35 2 1 61 0 1 4 3 4 95 7 6 26 4 3 51 1 0 16 0 2 9 12 5 19 0 2 57 6 7 12 9 1 14 5 0 26 1 0 11 chain 43212 chr7 159138663 + 45595812 45596335 L1PA7 6471 - 5 526 65158 225 1 0 110 1 0 186 chain 44369 chr7 159138663 + 45647224 45647903 L1PA16 3655 - 77 757 63734 91 15 24 143 0 2 28 7 5 61 20 20 56 18 0 11 2 12 143 0 2 58 1 0 9 2 1 14 chain 28691 chr7 159138663 + 45669108 45669417 AluYb8 318 - 10 318 90362 182 1 0 126 chain 7192 chr7 159138663 + 45672875 45672973 Tigger2b_Pri 1066 + 0 97 176133 81 2 1 15 chain 28718 chr7 159138663 + 45681243 45681545 AluYb8 318 + 0 302 90255 302 chain 23659 chr7 159138663 + 45703145 45703440 AluSg 306 + 9 303 112254 4 1 0 290 chain 28410 chr7 159138663 + 45704375 45704729 L1PA8 5853 - 0 347 91536 93 1 0 16 1 0 56 1 0 8 1 0 72 2 0 44 1 0 58 chain 309959 chr7 159138663 + 45705747 45709228 L1PA4 6152 - 11 3502 13006 102 0 1 230 0 8 1171 1 0 269 0 2 676 1 0 516 0 1 515 chain 44339 chr7 159138663 + 45732761 45733253 L1P1 4361 - 545 1037 63775 492 chain 44451 chr7 159138663 + 45733254 45733727 L1HS 6032 + 5559 6032 63634 473 chain 43446 chr7 159138663 + 45765857 45766366 MER9a2 513 - 0 513 64876 454 0 4 55 chain 10235 chr7 159138663 + 45766366 45766484 HERVK9-int 4720 - 0 118 159448 118 chain 28458 chr7 159138663 + 45775820 45776131 AluYa5 310 - 5 310 91340 182 6 0 123 chain 91449 chr7 159138663 + 45776745 45777801 L1PA6 6164 + 5093 6154 39149 488 0 4 423 0 1 145 chain 10195 chr7 159138663 + 45792216 45792422 MER47A 366 + 98 366 159653 73 1 2 42 39 94 21 13 19 17 chain 14240 chr7 159138663 + 45796085 45796244 L1PA6 6164 + 5766 5925 143757 159 chain 16786 chr7 159138663 + 45796250 45796464 L1PA6 6164 + 5926 6141 136142 89 1 2 124 chain 22498 chr7 159138663 + 45807728 45808012 AluSg7 307 - 28 307 118035 152 0 1 26 12 6 94 chain 22657 chr7 159138663 + 45811499 45811794 AluSx 319 - 12 308 117292 27 9 11 136 1 0 122 chain 22001 chr7 159138663 + 45819606 45819888 AluSp 311 + 2 286 120223 51 12 14 219 chain 23437 chr7 159138663 + 45832118 45832403 MER11B 1079 - 0 285 113438 11 5 4 161 1 2 107 chain 9045 chr7 159138663 + 45881422 45881532 L1PA4 6152 + 6047 6152 165344 98 5 0 7 chain 22001 chr7 159138663 + 45890960 45891256 AluY 311 + 0 302 120222 13 1 4 115 0 1 96 6 11 48 3 0 14 chain 29536 chr7 159138663 + 45899551 45900012 LTR7B 505 - 0 505 86496 51 14 13 76 1 0 43 1 0 4 0 1 35 0 2 9 32 1 14 1 0 6 0 25 12 0 38 60 0 10 45 0 1 19 0 2 38 chain 14466 chr7 159138663 + 45936529 45936806 L1PB1 5432 + 5168 5422 142998 51 1 0 17 1 0 43 2 1 12 28 16 18 13 10 10 2 0 24 1 0 22 1 0 12 1 0 18 chain 55644 chr7 159138663 + 45972888 45973822 L1PB1 5432 - 12 897 55340 16 1 0 4 23 23 7 1 0 24 24 19 22 10 1 8 3 0 16 1 0 43 1 0 16 2 1 53 2 0 8 2 0 3 2 0 9 1 0 9 1 0 23 7 0 12 11 0 51 1 0 5 12 13 182 1 0 37 3 4 104 0 2 75 8 5 90 chain 61854 chr7 159138663 + 45979723 45980476 LTR12 884 + 0 884 51973 134 0 133 109 2 0 508 chain 539030 chr7 159138663 + 45987030 45993012 L1PA3long 6157 - 10 6151 2987 277 0 3 377 0 4 109 0 12 64 0 1 942 0 4 728 6 5 1428 0 1 983 0 3 6 4 1 295 0 128 545 0 6 72 0 1 146 chain 315498 chr7 159138663 + 46054893 46059081 L1PA8A 6298 + 101 6290 12786 18 19 10 19 1 0 9 5 19 13 2 0 13 55 28 5 1 0 8 1 0 9 10 5 9 2 0 36 7 6 20 2 0 7 2 0 13 9 6 53 2 0 14 3 1 11 5 3 74 1 0 48 9 0 324 0 2 206 3 1 10 0 8 27 0 1 85 3 2 195 0 1 483 3 1 462 6 8 134 10 9 58 0 4 637 1 2034 27 0 2 132 1 0 72 11 8 440 0 10 175 0 6 168 chain 40773 chr7 159138663 + 46077805 46078297 MER9a1 513 - 0 513 68210 246 1 23 41 1 0 203 chain 389022 chr7 159138663 + 46078297 46082931 HERVK9-int 4720 - 0 4684 10484 101 0 2 168 0 1 6 1 0 535 5 53 527 11 14 238 0 2 1083 7 8 1361 0 1 457 2 1 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 41729 chr7 159138663 + 46084259 46084736 MER9a1 513 - 0 499 66989 246 1 23 230 chain 124479 chr7 159138663 + 46104588 46105976 L1PA4 6152 - 12 1401 29548 143 0 1 1245 chain 286502 chr7 159138663 + 46124984 46128681 L1PA6 6164 - 5 6164 14257 5 3 0 171 24 24 206 0 1 74 0 15 109 1 0 397 9 10 23 0 1 87 0 1 258 8 23 388 0 4 130 1 2422 218 0 3 534 0 1 232 0 17 170 8 5 61 7 6 24 0 1 89 8 0 22 35 40 100 9 1 286 chain 34487 chr7 159138663 + 46156285 46156732 MLT2A1 477 + 0 477 76931 170 4 1 8 0 1 23 0 1 191 0 1 11 3 33 37 chain 64269 chr7 159138663 + 46179921 46180630 L1PA2 6032 - 0 709 50889 709 chain 176739 chr7 159138663 + 46180785 46182716 L1PA2 6032 + 3240 5173 21277 754 0 2 1177 chain 18561 chr7 159138663 + 46188470 46188881 L1PB1 5432 - 13 369 131329 15 1 0 13 1 0 21 1 0 22 4 2 14 8 5 14 9 0 17 8 4 12 1 0 42 2 1 16 2 1 53 2 0 9 16 11 33 35 11 40 chain 5153 chr7 159138663 + 46244583 46244654 MER57E1 380 + 0 85 193525 40 0 14 31 chain 45558 chr7 159138663 + 46263191 46263727 L1PA8A 6298 + 5752 6291 62450 409 0 3 127 chain 86234 chr7 159138663 + 46300865 46301886 MER11B 1079 + 0 1041 41066 312 5 22 49 0 1 386 1 3 268 chain 6853 chr7 159138663 + 46310788 46310880 MLT1B 390 + 255 349 178556 65 4 6 23 chain 75847 chr7 159138663 + 46344802 46345839 L1PB1 5432 - 2105 3118 45486 104 25 0 152 0 1 76 0 4 34 9 12 110 1 0 6 3 0 158 0 1 114 4 0 241 chain 145766 chr7 159138663 + 46345839 46347967 L1PB1 5432 + 3342 5420 25214 363 16 22 235 6 5 14 22 12 487 13 18 129 2 0 177 1 2 98 0 2 147 1 0 50 39 15 16 1 0 12 1 0 8 12 8 5 2 0 14 0 3 35 1 0 17 1 0 44 1 0 7 32 21 19 28 23 22 1 0 19 1 0 29 chain 29062 chr7 159138663 + 46351284 46351812 MER1A 529 - 6 488 88709 55 3 7 143 31 2 141 3 0 5 5 8 27 83 62 32 chain 24590 chr7 159138663 + 46365471 46365759 AluY 311 + 0 282 107040 131 6 0 151 chain 29617 chr7 159138663 + 46366161 46366470 AluYb8 318 - 9 318 86153 309 chain 28215 chr7 159138663 + 46366481 46366790 AluYa5 310 - 3 310 92252 174 3 1 132 chain 64406 chr7 159138663 + 46374604 46375676 L1PA6 6164 - 3 765 50837 7 2 0 137 1 2 514 309 0 102 chain 30654 chr7 159138663 + 46376336 46376667 L1PA4 6152 - 0 331 83111 331 chain 389315 chr7 159138663 + 46376893 46381533 L1P2 5180 - 5 5168 10470 39 1 0 46 1 0 160 1 0 57 0 1 148 4 0 463 0 37 669 0 1 11 0 1 332 0 1 675 0 2 99 0 3 105 33 0 564 0 8 344 1 2 350 1 0 131 0 4 129 1 0 6 1 0 190 0 507 78 chain 15788 chr7 159138663 + 46419797 46419983 AluSp 311 + 81 269 138987 121 0 2 65 chain 6218 chr7 159138663 + 46449090 46449178 MER6B 211 + 123 211 183423 62 3 0 5 0 3 18 chain 3864 chr7 159138663 + 46453639 46453694 L1MA7 2200 - 344 398 209384 25 2 1 28 chain 3749 chr7 159138663 + 46454132 46454201 L1MA7 2200 + 2032 2089 211142 15 16 4 38 chain 32589 chr7 159138663 + 46454904 46455347 MER57A1 433 + 0 433 79875 288 5 0 71 11 5 33 0 1 35 chain 23803 chr7 159138663 + 46468293 46468642 THE1A 353 - 0 349 111461 155 1 0 46 46 45 22 0 2 79 chain 126405 chr7 159138663 + 46468655 46470542 THE1A-int 1579 - 9 1579 28970 1029 0 1 170 317 0 188 7 6 176 chain 46249 chr7 159138663 + 46473244 46473759 MER9a1 513 - 0 513 61815 68 2 0 445 chain 39200 chr7 159138663 + 46480857 46481335 L1PA7 6471 - 828 1299 70453 22 9 1 412 0 1 35 chain 57364 chr7 159138663 + 46481335 46482046 L1PA7 6471 + 5759 6470 54306 378 0 1 159 2 0 8 14 15 150 chain 76642 chr7 159138663 + 46492842 46493703 L1PA4 6152 - 11 872 45147 757 1 0 89 0 1 14 chain 14250 chr7 159138663 + 46497508 46497915 LTR49 580 - 167 580 143719 35 4 34 19 49 45 10 1 3 33 36 26 29 71 59 38 6 7 60 1 0 15 chain 7601 chr7 159138663 + 46513863 46513953 L1PA10 4194 + 844 934 173540 90 chain 31144 chr7 159138663 + 46521432 46521836 L1PA7 6471 - 814 1217 82264 41 1 0 218 0 6 6 22 16 116 chain 66116 chr7 159138663 + 46521836 46522625 L1PA7 6471 + 5670 6461 50044 269 0 1 380 0 1 140 chain 248259 chr7 159138663 + 46537918 46541071 L1PA7 6471 + 1178 6466 16351 119 0 1 81 1 0 14 0 1 731 0 1 390 4 6 55 20 2176 21 0 1 54 0 1 644 8 15 131 37 0 19 1 2 7 0 1 59 7 8 7 0 1 566 20 21 148 2 0 7 chain 6953 chr7 159138663 + 46562421 46562505 MER41C 542 + 458 542 177792 84 chain 59284 chr7 159138663 + 46576038 46576783 LTR17 781 - 13 781 53236 29 2 24 180 3 4 95 2 8 101 1 0 111 5 0 216 chain 4761 chr7 159138663 + 46586537 46586978 L1ME1 1623 + 1041 1487 197793 25 1 0 17 3 0 5 143 152 14 173 179 13 11 5 36 chain 138448 chr7 159138663 + 46599791 46601580 L1PA7 6471 - 2697 4442 26402 221 0 4 46 3 0 135 15 9 291 1 0 147 1 0 21 0 1 231 6 5 198 50 11 397 1 3 25 chain 210388 chr7 159138663 + 46601584 46604165 L1PA7 6471 + 3800 6468 18479 22 6 5 190 0 3 7 0 1 4 1 0 139 0 2 644 0 1 401 0 35 368 7 9 79 1 0 68 0 4 102 0 12 42 0 27 282 17 19 147 0 1 54 chain 119304 chr7 159138663 + 46687232 46688812 THE1B-int 1605 - 5 1604 31291 103 13 8 88 21 6 357 1 3 257 0 10 57 16 17 237 0 25 38 0 1 392 chain 5103 chr7 159138663 + 46726416 46726477 L1MB1 2102 + 1660 1721 194053 61 chain 28766 chr7 159138663 + 46727829 46728215 MSTA-int 1630 - 19 405 90043 31 0 1 312 20 19 23 chain 12402 chr7 159138663 + 46748738 46748922 MLT2B5 662 + 2 164 150632 62 22 0 100 chain 3161 chr7 159138663 + 46774370 46774551 L1MC1 2226 - 2027 2186 221721 31 131 109 19 chain 23071 chr7 159138663 + 46791764 46792046 AluSc 308 - 15 297 115291 14 0 1 72 0 1 100 1 0 65 1 0 29 chain 32334 chr7 159138663 + 46839248 46839604 L1PA3long 6157 - 8 364 80296 356 chain 24894 chr7 159138663 + 46841309 46841590 L1PA4 6152 - 9 289 105384 251 1 0 29 chain 77840 chr7 159138663 + 46859385 46860350 LTR13A 966 - 0 962 44601 102 0 1 453 17 16 8 1 0 141 1 0 160 1 0 81 chain 420414 chr7 159138663 + 46860776 46865255 L1HS 6032 + 1552 6031 9524 4479 chain 12507 chr7 159138663 + 46870684 46871011 L1PB1 5432 + 5125 5422 150221 17 4 2 12 18 12 52 30 28 33 1 0 15 7 4 13 9 0 13 24 20 24 1 0 23 1 0 11 1 0 18 chain 6321 chr7 159138663 + 46888254 46888405 MER53 195 - 0 158 182630 49 34 40 24 20 21 24 chain 6592 chr7 159138663 + 46899278 46899396 L1PB1 5432 - 10 121 180520 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 6 0 1 8 chain 1349 chr7 159138663 + 46912890 46913050 L1MC1 2226 + 1767 1914 146572 52 12 9 16 6 0 9 0 3 16 24 18 23 1 0 1 chain 82034 chr7 159138663 + 46913066 46914293 L1PB1 5432 + 4197 5404 42747 119 0 1 133 1 0 165 9 6 148 0 1 331 10 18 19 1 0 9 19 14 8 2 0 51 19 17 44 1 0 15 1 0 4 22 11 11 47 42 6 1 0 22 0 3 9 chain 1163 chr7 159138663 + 46914345 46914483 L1MC1 2226 + 1914 2047 146572 66 17 12 55 chain 122341 chr7 159138663 + 46963735 46965239 L1PA7 6471 - 2 1515 30269 10 5 0 134 29 32 503 0 1 76 0 1 10 0 2 73 0 4 454 2 5 208 chain 4899 chr7 159138663 + 47001819 47001886 L1PA17 2846 + 2628 2693 196279 4 1 0 17 1 0 44 chain 26578 chr7 159138663 + 47015720 47016079 L1PA8 5853 - 0 347 97732 93 1 0 19 2 1 9 3 0 21 2 0 16 2 1 14 1 0 71 2 0 44 1 0 58 chain 54145 chr7 159138663 + 47049031 47049678 PABL_A 660 + 0 657 56267 84 5 14 125 1 2 432 chain 8642 chr7 159138663 + 47059511 47059611 THE1B 368 - 268 368 167531 100 chain 7937 chr7 159138663 + 47071870 47071971 LTR9B 643 + 461 561 171408 64 2 1 35 chain 11118 chr7 159138663 + 47148851 47149070 L1PB1 5432 - 5 194 155742 5 3 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 16 1 7 2 0 4 1 0 16 1 0 42 chain 45843 chr7 159138663 + 47165248 47166051 LTR1 825 - 0 811 62185 5 0 2 22 18 17 44 1 0 198 1 0 145 143 101 20 6 50 11 0 2 8 10 8 28 0 1 117 0 6 26 chain 18087 chr7 159138663 + 47188904 47189193 MER1B 344 + 0 336 132625 23 7 12 27 0 2 5 2 0 12 10 11 124 4 0 51 1 46 23 chain 40561 chr7 159138663 + 47195316 47195838 MLT2A2 560 - 0 539 68493 148 2 13 83 1 2 135 0 5 153 chain 18858 chr7 159138663 + 47197746 47197995 L1PA8 5853 + 5608 5853 130494 74 1 0 5 2 1 56 1 0 16 2 1 92 chain 534753 chr7 159138663 + 47199281 47205389 L1PA5 6144 + 0 6143 3621 13 6 5 13 0 1 495 0 1 105 0 1 202 0 9 201 9 0 8 0 9 1242 3 1 1376 1 0 1785 4 31 313 3 2 115 0 1 214 chain 122529 chr7 159138663 + 47215725 47217298 THE1B-int 1605 + 0 1598 30211 236 0 1 148 45 69 1144 chain 21483 chr7 159138663 + 47217305 47217644 THE1B 368 + 0 368 122204 44 11 29 40 0 1 62 1 0 22 34 45 125 chain 6805 chr7 159138663 + 47242495 47242578 L1PA5 6144 + 6057 6141 178911 57 0 1 26 chain 38236 chr7 159138663 + 47257171 47257677 LTR2B 499 - 0 499 71793 55 1 0 137 1 0 284 5 3 5 3 0 15 chain 85770 chr7 159138663 + 47262660 47263710 MER11C 1089 + 0 1085 41236 225 0 5 32 5 8 49 1 18 253 8 9 178 0 9 299 chain 35569 chr7 159138663 + 47300535 47301029 L1PA15 4387 + 3508 4006 75454 95 2 0 9 8 21 5 0 2 175 2 0 12 4 0 52 0 1 10 2 0 23 1 0 20 1 0 73 chain 22960 chr7 159138663 + 47324882 47325207 THE1B 368 + 0 328 115805 169 1 0 29 0 3 8 1 5 16 1 0 12 1 0 63 2 0 5 1 2 16 chain 43767 chr7 159138663 + 47350347 47350859 L1PA5 6144 - 178 692 64489 266 1 2 89 0 1 156 chain 11858 chr7 159138663 + 47350866 47350996 L1PA5 6144 + 5997 6127 152796 130 chain 13225 chr7 159138663 + 47352336 47352486 L1PA4 6152 + 5997 6151 147368 96 0 4 54 chain 3960 chr7 159138663 + 47362892 47362963 L1MDa 1598 + 1080 1154 207980 22 11 14 38 chain 28025 chr7 159138663 + 47378210 47378626 L1PA16 3655 - 176 588 92916 69 20 18 101 2 0 90 2 1 72 8 9 52 chain 23775 chr7 159138663 + 47379713 47380004 AluSc 308 - 2 294 111623 44 0 1 247 chain 2729 chr7 159138663 + 47402716 47402863 HAL1-2a_MD 234 + 24 104 229752 15 67 30 20 30 0 15 chain 18012 chr7 159138663 + 47508953 47509289 L1PA16 3655 + 3046 3382 132827 75 26 27 56 1 0 24 8 9 17 0 2 5 3 1 28 2 0 43 19 20 29 chain 30010 chr7 159138663 + 47564118 47564434 AluYb8 318 + 0 316 84777 316 chain 24537 chr7 159138663 + 47566548 47566839 AluY 311 + 0 287 107325 126 4 0 161 chain 3912 chr7 159138663 + 47572106 47572191 MER52C 1267 + 881 1017 208674 27 8 48 16 11 22 23 chain 4815 chr7 159138663 + 47614106 47614212 L1MB3 1562 + 1106 1225 197168 15 0 12 32 29 31 5 1 0 24 chain 10905 chr7 159138663 + 47635637 47635772 LTR1 825 + 37 184 156569 31 0 12 104 chain 187113 chr7 159138663 + 47636933 47639622 HUERS-P2-int 2744 + 43 2734 20326 12 1 0 31 2 0 5 1 0 53 1 0 19 3 0 10 26 22 29 126 115 124 1 0 25 0 3 6 6 1 8 0 2 162 5 6 73 6 3 48 0 2 522 0 8 646 0 12 268 29 57 125 1 0 61 1 0 10 2 0 33 4 0 35 2 1 12 1 0 6 5 3 15 1 0 39 3 0 20 0 1 12 2 1 9 2 0 5 2 0 11 3 1 19 chain 53566 chr7 159138663 + 47643107 47643835 LTR12 884 + 0 861 56634 24 1 0 71 0 132 103 0 25 15 8 6 15 25 1 390 0 3 76 chain 14532 chr7 159138663 + 47656781 47656988 MER57B1 401 - 15 236 142797 70 0 11 13 14 17 110 chain 117902 chr7 159138663 + 47667893 47669313 LTR12C 1709 + 0 1709 31831 437 0 1 23 18 18 94 6 5 72 0 278 184 9 6 106 0 4 357 0 10 114 chain 26141 chr7 159138663 + 47721762 47722061 AluYk4 311 - 12 311 99438 299 chain 3477 chr7 159138663 + 47736035 47736101 MADE1 96 - 11 96 215698 13 1 2 17 5 23 30 chain 8510 chr7 159138663 + 47736651 47736785 MSTB 430 - 14 151 168242 58 2 1 51 9 13 14 chain 97610 chr7 159138663 + 47743488 47744720 HSMAR1 1287 - 47 1287 37395 302 12 13 96 0 1 226 0 3 272 0 3 324 chain 23168 chr7 159138663 + 47746796 47747067 AluY 311 + 20 289 114823 112 0 1 151 3 0 5 chain 20802 chr7 159138663 + 47750779 47751035 AluSp 311 + 26 281 124591 251 1 0 4 chain 23974 chr7 159138663 + 47751036 47751323 AluSp 311 + 5 292 110483 287 chain 25559 chr7 159138663 + 47782636 47782919 L1PA4 6152 + 5863 6146 101934 283 chain 40639 chr7 159138663 + 47791265 47791787 LTR12 884 + 3 873 68385 22 1 0 249 0 113 159 0 103 42 0 133 49 chain 7073 chr7 159138663 + 47801210 47801306 L1MA1 4479 - 328 420 176927 9 1 0 35 2 0 29 1 0 19 chain 124936 chr7 159138663 + 47833231 47834756 THE1A-int 1579 + 0 1572 29415 283 0 1 22 1 2 42 2 0 599 0 3 23 0 45 547 1 0 5 chain 2942 chr7 159138663 + 47856856 47856889 MER63A 208 + 105 138 226310 33 chain 24040 chr7 159138663 + 47888125 47888419 AluSp 311 + 0 297 110115 52 5 9 216 1 0 20 chain 66045 chr7 159138663 + 47888431 47889402 L1PB2 3958 + 2694 3836 50075 44 1 13 172 1 0 127 9 8 121 0 1 127 2 0 67 4 0 26 0 1 33 37 43 63 3 0 26 6 5 46 1 0 9 1 165 45 chain 406119 chr7 159138663 + 47956200 47961460 L1PB1 5432 + 77 5277 9909 200 3 4 125 1 0 71 0 2 91 0 1 318 13 9 241 11 21 87 0 4 153 19 10 309 24 0 202 7 0 569 6 0 183 2 0 87 1 0 122 0 3 173 0 3 24 0 3 379 0 4 168 0 1 67 38 9 13 2 4 68 2 1 134 0 1 604 3 1 68 0 13 51 14 1 29 0 2 167 0 9 178 5 0 39 1 2 11 10 3 27 1 0 12 5 1 8 2 0 53 2 1 16 1 0 40 chain 123871 chr7 159138663 + 47961509 47962945 SVA_B 1603 + 10 1603 29741 12 0 11 480 0 1 187 2 1 4 0 1 130 0 65 39 2 1 8 0 77 141 0 4 431 chain 23225 chr7 159138663 + 47965094 47965398 MER4D1 891 + 0 328 114566 238 0 28 56 4 0 6 chain 4714 chr7 159138663 + 47985889 47985946 L1PA8 5853 + 5677 5733 198343 16 1 0 40 chain 144160 chr7 159138663 + 47998379 47999983 SVA_D 2077 + 0 2077 25449 25 5 0 736 0 40 119 1 0 24 0 138 16 0 303 667 2 0 9 chain 40991 chr7 159138663 + 48020310 48020786 L1PA6 6164 + 5689 6159 67920 460 6 0 10 chain 45782 chr7 159138663 + 48024449 48024962 MER9a2 513 + 0 513 62247 513 chain 78380 chr7 159138663 + 48029275 48030192 LTR5_Hs 974 + 0 930 44332 13 0 4 117 0 1 111 0 2 210 0 4 222 0 4 79 1 0 144 1 0 19 chain 23960 chr7 159138663 + 48036399 48036695 AluSc 308 - 11 307 110565 159 1 2 5 1 0 130 chain 12287 chr7 159138663 + 48042440 48042587 L1PREC2 3366 - 1036 1183 151051 147 chain 46866 chr7 159138663 + 48042827 48043520 L1PA13 3608 - 67 742 61337 6 1 0 14 6 0 3 1 0 16 6 1 10 6 3 22 1 0 18 9 5 38 7 14 55 1 0 62 3 1 111 4 3 27 1 0 68 0 1 197 chain 21951 chr7 159138663 + 48057977 48058234 AluSc 308 + 37 294 120421 257 chain 154487 chr7 159138663 + 48058869 48061153 L1MA1 4479 + 1880 4155 24049 205 2 0 28 0 5 44 5 6 10 6 12 412 26 0 65 2 1 102 3 1 28 8 6 26 1 0 41 2 0 41 8 4 41 1 0 27 2 0 95 9 9 25 0 3 5 3 0 17 0 17 95 1 0 7 6 5 112 22 24 19 0 1 12 0 1 88 4 1 112 0 1 70 0 17 18 2 0 16 1 0 71 1 0 18 3 1 14 1 0 70 1 0 18 1 0 5 3 0 68 0 4 13 0 1 40 1 0 29 2 0 35 1 0 9 1 0 4 chain 61576 chr7 159138663 + 48083444 48084227 LTR17 781 - 0 781 52084 157 1 2 295 1 0 166 1 0 105 1 0 56 chain 38860 chr7 159138663 + 48088394 48088894 LTR19A 502 + 1 502 70933 46 1 0 11 0 1 252 1 2 189 chain 58896 chr7 159138663 + 48123389 48124475 MER4E1 777 + 0 766 53461 17 3 0 16 0 2 215 0 1 68 310 0 26 3 0 67 7 8 44 4 5 77 2 0 147 7 0 73 chain 3540 chr7 159138663 + 48126290 48126331 MER41-int 2638 - 2 43 214711 41 chain 43983 chr7 159138663 + 48160178 48160678 MER9a3 513 + 14 513 64222 240 5 4 255 chain 317226 chr7 159138663 + 48161247 48165707 L1PB1 5432 - 155 4561 12715 41 1 0 15 2 1 51 3 1 9 2 0 3 2 0 12 1 0 10 1 0 20 127 20 387 0 2 77 3 0 550 9 11 88 0 1 36 0 3 7 3 0 178 0 1 21 1 0 281 0 3 103 0 5 23 13 40 212 2 1 48 2 0 6 0 3 57 0 1 114 21 21 39 4 6 109 0 1 63 7 3 93 0 9 18 1 6 6 5 0 406 4 0 75 3 0 5 2 9 40 0 7 65 0 1 185 0 3 43 10 10 192 7 11 97 0 1 81 0 2 244 1 0 113 chain 17170 chr7 159138663 + 48173573 48173908 MER51B 395 - 7 395 135107 67 0 1 4 1 0 7 3 15 49 1 0 10 43 59 4 0 1 55 10 16 34 7 26 40 chain 12140 chr7 159138663 + 48179406 48179611 MER51B 395 - 38 292 151655 48 3 15 49 36 66 63 0 7 6 chain 77840 chr7 159138663 + 48180865 48181901 HERVK22-int 3844 + 13 1041 44602 27 3 0 25 0 10 5 22 0 31 15 14 323 0 1 568 0 7 17 chain 54499 chr7 159138663 + 48184802 48185577 MER4E1 777 + 17 777 56027 120 0 1 51 1 0 40 0 1 16 0 1 103 7 6 182 21 14 21 16 8 73 4 1 98 0 2 22 chain 40312 chr7 159138663 + 48185870 48186321 LTR7 482 - 0 482 68863 186 0 31 265 chain 50592 chr7 159138663 + 48186850 48187434 LTR14C 587 - 0 587 58586 295 0 1 26 0 1 140 0 1 123 chain 14446 chr7 159138663 + 48187434 48187960 LTR9 672 - 426 672 143058 45 0 1 4 1 0 90 2 1 14 323 44 47 chain 41599 chr7 159138663 + 48240517 48241055 LTR14C 587 - 0 555 67156 73 10 15 82 1 0 140 0 2 151 0 1 44 5 15 32 chain 139326 chr7 159138663 + 48241365 48243076 LTR12C 1709 - 0 1709 26242 444 0 2 35 0 4 106 2 0 8 2 1 36 1 0 76 0 41 119 1 0 134 41 0 125 2 1 140 0 1 167 4 0 25 0 1 243 chain 3540 chr7 159138663 + 48242329 48242370 LTR12C 1709 - 847 887 91552 25 1 0 15 chain 14055 chr7 159138663 + 48270549 48270768 L1PA8 5853 + 5638 5853 144362 32 24 15 10 0 7 42 1 0 16 1 0 93 chain 30017 chr7 159138663 + 48334024 48334342 AluYb8 318 - 0 318 84748 318 chain 5867 chr7 159138663 + 48360779 48360903 MER20 218 + 96 216 186514 65 39 35 20 chain 5432 chr7 159138663 + 48367030 48367094 THE1C 375 - 311 375 190683 64 chain 3433 chr7 159138663 + 48395204 48395254 L2a 937 - 547 594 216518 5 3 0 42 chain 27559 chr7 159138663 + 48399639 48399962 L1PA5 6144 - 0 325 94472 154 0 1 29 0 1 140 chain 147947 chr7 159138663 + 48407920 48410133 L1PB1 5432 - 5 2100 24884 5 3 0 18 1 0 13 1 0 21 1 0 24 2 0 10 15 12 12 27 16 15 4 3 18 3 4 19 3 2 14 2 1 52 2 0 8 4 0 16 1 0 10 1 0 11 131 17 8 4 0 81 0 2 5 2 0 27 0 21 158 1 0 175 0 1 12 0 11 140 1 0 95 2 1 404 0 3 6 3 1 50 0 1 74 0 1 108 1 0 389 chain 5481 chr7 159138663 + 48434307 48434386 L1PB1 5432 - 8 83 190210 4 1 0 16 1 0 13 1 0 21 1 0 21 chain 26604 chr7 159138663 + 48465350 48465637 AluYf4 310 - 23 310 97641 287 chain 5336 chr7 159138663 + 48471621 48471680 L1PA5 6144 + 6076 6135 191675 59 chain 5903 chr7 159138663 + 48513324 48513407 LTR56 451 - 368 449 186156 49 1 0 21 1 0 11 chain 62825 chr7 159138663 + 48516813 48517498 L1PA4 6152 + 5467 6152 51527 685 chain 5305 chr7 159138663 + 48519133 48519325 L1MA8 2339 - 102 287 191965 18 31 26 27 15 12 29 43 44 29 chain 20325 chr7 159138663 + 48560153 48560392 L1PA5 6144 - 3 242 126162 239 chain 374510 chr7 159138663 + 48569534 48575030 L1PB1 5432 - 10 5395 10939 18 1 0 12 1 0 22 1 0 17 0 2 5 2 0 12 12 8 18 19 7 5 1 0 10 27 5 60 3 1 52 2 0 9 2 0 3 2 0 14 5 0 4 1 0 13 74 13 7 0 8 78 6 8 203 1 3 49 0 1 123 4 0 6 1 2 421 2 0 188 3 2 274 0 3 15 14 7 130 0 1 4 1 0 314 1 2 173 0 1 64 13 8 178 1 0 19 1 0 401 0 6 411 8 13 279 2 0 245 0 32 14 34 32 386 43 11 356 187 188 93 1 0 38 9 10 268 chain 36903 chr7 159138663 + 48576987 48577602 LTR10A 586 - 15 586 73652 14 1 0 14 1 6 23 0 1 198 19 18 111 58 0 63 14 15 28 12 21 59 chain 79904 chr7 159138663 + 48588657 48589728 L1PA8 5853 - 1 1066 43637 91 2 1 14 7 6 43 11 10 8 1 0 71 2 0 44 1 0 27 1 0 258 0 1 186 5 8 74 2 0 223 chain 5059 chr7 159138663 + 48597308 48597400 MADE1 96 - 5 96 194544 40 7 0 17 5 11 23 chain 499024 chr7 159138663 + 48640827 48647093 L1PA7 6471 - 3 6466 6893 159 1 0 22 0 5 72 3 4 585 1 0 674 4 0 122 9 8 494 1 2 589 11 9 199 1 2 422 0 4 458 1 2 55 2 1 351 13 30 440 0 1 394 1 0 211 12 16 214 4 4 178 10 20 211 54 217 40 0 1 41 11 10 20 5 4 104 0 1 67 chain 64350 chr7 159138663 + 48653946 48654641 L1PA3long 6157 + 5462 6157 50863 695 chain 320987 chr7 159138663 + 48712591 48716394 L1PA6 6164 + 2320 6160 12558 5 0 2 23 4 5 44 0 14 765 11 12 1129 1 0 803 0 5 161 0 10 14 0 4 300 0 1 543 chain 540960 chr7 159138663 + 48724540 48730674 L1PA4 6152 + 0 6138 2669 708 0 1 330 0 1 1593 0 1 568 1 2 844 0 1 212 0 1 1636 1 0 98 1 0 142 chain 8907 chr7 159138663 + 48768680 48768795 HSMAR1 1287 - 1164 1279 166103 115 chain 199574 chr7 159138663 + 48769025 48771309 L1PA4 6152 + 2630 4909 19240 584 1 0 96 7 0 688 0 2 108 9 10 314 12 13 205 1 0 259 chain 109326 chr7 159138663 + 48771309 48772545 L1PA4 6152 + 4910 6152 34361 1099 0 1 131 0 5 6 chain 30765 chr7 159138663 + 48786655 48787192 L1PA13 3608 - 2366 3518 82925 24 0 25 130 1 2 4 1 0 56 5 617 95 2 0 71 25 11 12 0 3 15 3 0 12 2 1 25 1 0 3 2 0 13 18 16 17 chain 6655 chr7 159138663 + 48796580 48796864 MLT2B1 522 + 80 389 180048 60 125 201 12 51 0 36 chain 22016 chr7 159138663 + 48813845 48814127 L1PA6 6164 - 2 285 120157 140 7 8 135 chain 20692 chr7 159138663 + 48825970 48826286 THE1B 368 + 0 349 124994 40 0 15 89 0 9 19 2 1 25 35 45 106 chain 122321 chr7 159138663 + 48830630 48831958 L1PA2 6032 - 4 1332 30273 1328 chain 19491 chr7 159138663 + 48862222 48862536 THE1C 375 + 0 355 128683 78 0 1 49 6 5 27 45 87 103 1 0 5 chain 28200 chr7 159138663 + 48867903 48868206 AluYa5 310 + 0 304 92309 31 0 1 272 chain 43173 chr7 159138663 + 48885222 48885732 MER9a1 513 + 2 508 65206 11 0 1 148 6 1 345 chain 17002 chr7 159138663 + 48886906 48887101 L1PA3long 6157 + 5957 6152 135590 195 chain 208210 chr7 159138663 + 48921941 48924380 L1PA5 6144 - 5 2437 18623 135 0 1 907 0 1 73 1 0 103 1 0 448 12 1 310 1 2 171 0 3 110 1 0 11 0 1 155 chain 78021 chr7 159138663 + 48924380 48925276 L1PA5 6144 + 2828 3723 44382 374 1 0 521 chain 43276 chr7 159138663 + 48965894 48966405 MER9a1 513 - 5 511 65085 345 6 1 160 chain 87841 chr7 159138663 + 48985901 48986959 MER11C 1089 - 16 1089 40432 474 12 13 220 0 5 56 0 9 296 chain 81145 chr7 159138663 + 48988588 48989620 MER11A 1151 - 80 1151 43115 103 0 1 49 0 1 20 0 1 37 6 40 10 0 1 121 11 14 377 0 2 63 0 4 28 2 0 21 8 0 68 0 2 108 chain 46426 chr7 159138663 + 49007366 49007975 LTR66 600 - 0 600 61658 87 0 1 7 1 17 77 26 0 411 chain 384814 chr7 159138663 + 49043212 49047731 L1PA4 6152 - 9 6150 10614 1686 0 3 220 5 6 126 1 0 189 0 1 747 1 0 703 0 2 297 102 1719 442 chain 46639 chr7 159138663 + 49054247 49055169 MER11C 1089 - 37 1089 61508 162 0 1 53 13 14 13 59 102 30 113 114 13 61 51 12 28 27 75 1 2 116 0 3 118 0 91 55 chain 60220 chr7 159138663 + 49064377 49065051 L1PA4 6152 + 5469 6143 52718 674 chain 5390 chr7 159138663 + 49069579 49069658 MADE1 96 - 0 96 191085 42 7 24 30 chain 44036 chr7 159138663 + 49122755 49123376 L1PA8 5853 + 5247 5853 64162 111 16 5 201 1 0 36 10 8 71 1 0 11 1 0 37 16 15 18 1 0 23 0 3 67 chain 3006 chr7 159138663 + 49137152 49137186 L1MA2 4263 + 3379 3413 224921 34 chain 29837 chr7 159138663 + 49140680 49141089 LTR7 482 + 0 482 85324 69 8 46 109 0 1 33 0 32 129 12 14 49 chain 254366 chr7 159138663 + 49154548 49157331 L1PA3long 6157 - 985 3767 16010 4 1 0 2778 chain 89392 chr7 159138663 + 49157331 49158322 L1PA3long 6157 + 5165 6157 39844 974 0 1 17 chain 3418 chr7 159138663 + 49175549 49175589 LTR23 429 + 344 384 216793 40 chain 26522 chr7 159138663 + 49178555 49178840 AluYd8 298 + 0 285 97964 285 chain 18969 chr7 159138663 + 49181356 49181585 MER9a3 513 - 280 513 130185 116 0 1 4 0 1 91 0 2 18 chain 102346 chr7 159138663 + 49182047 49183228 L1P1 4361 - 2216 3415 36183 458 0 18 292 4 0 365 0 4 62 chain 17231 chr7 159138663 + 49195803 49196005 L1PA4 6152 + 5939 6152 134976 21 0 4 175 0 7 6 chain 38795 chr7 159138663 + 49197202 49197744 LTR12D 1347 + 665 1347 71022 20 2 44 24 1 0 78 14 13 75 6 7 59 0 97 247 0 2 16 chain 6998 chr7 159138663 + 49207488 49207647 MSTB1 431 + 273 419 177472 38 58 46 57 1 0 5 chain 24030 chr7 159138663 + 49224246 49224757 L1PA17 2846 + 2178 2693 110165 25 6 11 62 9 18 70 1 0 4 9 13 121 15 8 25 9 8 28 88 84 12 1 0 26 chain 10306 chr7 159138663 + 49253471 49253602 MER2 342 - 126 255 159108 75 2 0 54 chain 88262 chr7 159138663 + 49269894 49270879 L1PA3long 6157 - 15 993 40277 131 8 1 846 chain 23257 chr7 159138663 + 49318159 49318495 HSMAR1 1287 - 0 352 114409 29 11 12 8 0 1 78 0 2 105 12 24 93 chain 12520 chr7 159138663 + 49342948 49343295 L1PREC2 3366 - 331 637 150167 22 9 7 35 22 8 11 4 0 7 0 1 22 2 0 10 60 47 12 13 9 37 9 8 47 2 0 23 chain 8474 chr7 159138663 + 49343689 49343795 L1PREC2 3366 + 2376 2482 168436 106 chain 3471 chr7 159138663 + 49358921 49359318 L1MD2 1676 + 722 1137 215792 19 201 222 38 122 119 17 chain 44268 chr7 159138663 + 49370899 49371531 L1PA8 5853 + 5243 5853 63861 154 8 0 17 0 1 94 11 3 52 10 9 36 2 0 68 3 2 14 1 0 47 17 16 4 1 0 93 chain 29672 chr7 159138663 + 49402038 49402348 AluYa5 310 - 0 310 85936 310 chain 56116 chr7 159138663 + 49419228 49419905 L1PA5 6144 - 0 684 55061 11 1 4 139 1 4 473 0 1 52 chain 149355 chr7 159138663 + 49475615 49477418 L1PA7 6471 + 4638 6456 24707 81 5 6 288 0 1 106 1 0 84 1 0 4 0 1 405 1 0 7 1 0 48 0 1 142 0 12 312 5 6 170 0 2 142 chain 51330 chr7 159138663 + 49485472 49486136 LTR12_ 688 + 0 688 58079 121 0 25 195 10 12 187 5 2 146 chain 89853 chr7 159138663 + 49493110 49494367 LTR12C 1709 + 0 1690 39702 168 0 1 108 1 5 54 0 43 57 0 1 27 9 5 32 32 49 102 0 278 144 1 3 35 1 0 5 3 1 106 11 4 212 14 116 71 1 0 63 chain 29869 chr7 159138663 + 49494367 49494684 AluYb9 318 + 0 317 85219 317 chain 26958 chr7 159138663 + 49498080 49498408 L1PA5 6144 - 2 329 96414 87 2 0 51 0 2 110 2 1 76 chain 20345 chr7 159138663 + 49498417 49498644 L1PA5 6144 + 5563 5790 126081 227 chain 35258 chr7 159138663 + 49500000 49500400 L1PA4 6152 + 5740 6140 75849 400 chain 26464 chr7 159138663 + 49521317 49521738 L1PA16 3655 + 3134 3542 98191 66 46 34 59 2 0 161 9 10 78 chain 28265 chr7 159138663 + 49552074 49552383 AluYa5 310 - 5 306 92061 173 8 0 128 chain 10811 chr7 159138663 + 49573310 49573456 L1PA10 4194 - 44 187 156935 34 3 0 9 0 1 4 1 0 95 chain 9488 chr7 159138663 + 49576807 49576934 MER85 139 + 0 136 163125 20 2 1 69 0 10 36 chain 109013 chr7 159138663 + 49597992 49599254 L1PA5 6144 - 801 2045 34437 38 1 2 458 21 3 414 2 1 328 chain 64968 chr7 159138663 + 49599254 49600005 L1PA5 6144 + 5393 6144 50587 391 0 1 25 0 1 74 1 0 104 1 0 155 chain 4169 chr7 159138663 + 49640965 49641281 L1MC3 1789 - 1277 1585 204981 30 160 154 14 76 74 36 chain 16173 chr7 159138663 + 49647523 49647829 L1PB1 5432 + 5001 5295 137832 70 15 15 10 12 13 5 3 0 20 1 0 12 1 0 10 2 0 3 2 0 9 3 1 50 1 0 17 1 0 34 0 1 9 1 0 15 chain 28206 chr7 159138663 + 49649944 49650297 L1PREC2 3366 - 956 1309 92286 353 chain 78537 chr7 159138663 + 49654067 49655029 LTR13A 966 + 0 966 44250 76 0 4 518 0 2 70 11 7 22 9 10 143 1 2 112 chain 41574 chr7 159138663 + 49681969 49682467 L1PA6 6164 + 5658 6156 67194 498 chain 548485 chr7 159138663 + 49689334 49695469 L1PA4 6152 + 0 6136 1643 437 0 1 553 4 1 864 1 0 22 0 1 1286 0 1 343 1 0 217 0 1 213 0 1 2097 0 1 97 chain 281221 chr7 159138663 + 49702283 49705483 L1PA4 6152 - 0 3197 14576 5 3 0 123 0 1 38 8 9 761 2 1 243 0 1 683 0 1 347 0 1 286 8 3 140 1 0 412 0 2 140 chain 59424 chr7 159138663 + 49705483 49706201 L1P1 4361 + 133 852 53103 59 1 2 56 0 1 323 1 0 278 chain 32149 chr7 159138663 + 49719476 49719838 L1PA3long 6157 - 10 369 80612 249 1 0 102 2 0 8 chain 567291 chr7 159138663 + 49719864 49725896 L1HS 6032 - 0 6031 71 23 2 0 5936 0 1 71 chain 108121 chr7 159138663 + 49750668 49752079 LTR12C 1709 + 0 1709 34680 266 0 1 277 4 0 175 0 118 75 0 2 39 5 115 44 1 0 4 4 2 106 11 4 139 0 1 28 0 102 129 1 0 57 21 0 25 chain 41494 chr7 159138663 + 49757463 49757980 L1PA6 6164 + 5632 6158 67287 199 0 2 211 0 5 78 10 12 19 chain 27468 chr7 159138663 + 49774903 49775269 THE1B 368 - 0 368 94748 75 1 0 60 0 1 59 2 1 127 0 5 26 2 0 14 chain 36319 chr7 159138663 + 49777349 49777845 MLT2A2 560 + 0 506 74479 399 3 14 59 12 10 5 0 2 13 1 0 4 chain 59963 chr7 159138663 + 49825753 49826579 L1PA16 3655 - 77 907 52842 288 2 0 71 4 5 10 1 0 25 10 11 251 1 0 16 1 0 34 4 11 108 chain 3443 chr7 159138663 + 49851328 49851367 L1ME1 1623 + 1237 1276 216307 39 chain 40181 chr7 159138663 + 49870115 49870566 L1PA5 6144 - 3 450 69062 6 4 0 441 chain 96317 chr7 159138663 + 49893312 49894379 L1PA5 6144 - 0 1069 37726 575 0 2 492 chain 22623 chr7 159138663 + 49896361 49896634 AluY 311 + 38 311 117467 94 0 1 73 2 1 104 chain 15048 chr7 159138663 + 49897629 49897793 L1PA4 6152 - 536 700 141179 164 chain 33203 chr7 159138663 + 49897793 49898161 L1PA4 6152 + 5633 6001 78875 368 chain 13163 chr7 159138663 + 49898161 49898309 L1PA4 6152 + 6002 6152 147603 102 0 2 46 chain 29758 chr7 159138663 + 49936477 49936790 AluYb8 318 - 5 318 85617 313 chain 7806 chr7 159138663 + 49941304 49942063 L1MD2 1676 + 235 445 172271 20 51 74 91 57 0 3 515 0 22 chain 56744 chr7 159138663 + 49973019 49973654 L1PA4 6152 + 5512 6152 54688 629 0 5 6 chain 53696 chr7 159138663 + 50054995 50055878 L1PA15 4387 + 3499 4366 56548 43 4 17 242 7 14 12 4 0 61 24 10 35 1 0 168 5 4 25 1 0 55 1 0 20 5 1 9 4 5 36 21 18 40 3 1 12 10 5 24 1 0 10 chain 524739 chr7 159138663 + 50079963 50086901 L1PA7 6471 + 0 6469 4708 123 16 0 8 0 16 19 1 2 83 43 51 774 0 1 133 0 4 83 19 0 47 0 1 160 6 7 176 1 2 193 1 0 130 1 0 39 0 8 458 0 4 15 513 1 100 1 2 184 1 11 182 5 8 424 2 0 163 1 0 201 0 4 181 0 5 66 0 10 597 0 4 944 3 5 678 1 4 10 4 0 148 chain 38299 chr7 159138663 + 50082492 50082998 MER9a3 513 + 0 513 71709 11 2 4 61 0 1 179 1 0 12 1 2 24 2 1 12 0 4 123 0 1 78 chain 45525 chr7 159138663 + 50096262 50097138 LTR19B 566 + 0 566 62482 170 1 2 57 310 0 247 4 3 33 0 1 21 1 0 32 chain 11932 chr7 159138663 + 50101237 50101381 LTR19B 566 + 0 144 152473 144 chain 36692 chr7 159138663 + 50102461 50102920 LTR15 485 - 10 485 73966 79 5 12 10 1 3 12 0 1 134 0 1 202 0 5 16 chain 78353 chr7 159138663 + 50103632 50104694 MER11C 1089 - 16 1089 44348 11 0 1 141 1 0 54 0 1 127 0 1 35 1 0 7 1 5 112 44 45 38 6 0 109 1 0 65 0 4 61 0 9 95 1 0 152 chain 39991 chr7 159138663 + 50110198 50110671 LTR15 485 - 10 485 69331 135 0 1 233 1 2 104 chain 261928 chr7 159138663 + 50113258 50117147 L1MA1 4479 + 249 4163 15589 29 2 0 80 5 4 56 0 2 147 0 4 59 0 21 79 1 2 54 0 4 205 0 11 82 21 28 177 14 16 198 1 0 168 6 5 251 2 0 13 11 9 6 0 1 10 8 12 58 0 5 125 0 4 19 1 5 398 1 0 71 2 1 100 9 7 21 30 13 56 2 1 57 0 1 34 1 0 27 2 0 15 0 2 55 10 13 85 41 47 61 4 0 94 1 0 24 1 0 5 4 0 13 4 5 115 2 0 34 1 0 162 1 0 24 33 30 57 1 0 19 2 0 11 6 5 49 4 8 26 1 0 8 1 0 4 3 1 37 0 1 4 1 0 75 7 6 27 3 0 8 0 1 20 8 7 8 0 1 11 chain 67276 chr7 159138663 + 50129716 50131003 L1PB1 5432 - 8 1030 49533 8 1 0 12 1 0 9 0 3 14 6 5 26 14 15 5 2 0 19 25 8 4 1 0 15 1 0 45 6 5 10 2 1 53 2 0 8 9 5 10 1 0 10 6 5 23 221 3 138 0 1 63 1 3 85 2 1 182 6 0 42 14 1 185 chain 14117 chr7 159138663 + 50131003 50131172 L1PB1 5432 + 4236 4405 143610 169 chain 122757 chr7 159138663 + 50161835 50163173 L1PA3long 6157 + 4819 6156 30134 1333 1 0 4 chain 18097 chr7 159138663 + 50229598 50229987 THE1B 368 - 0 368 132602 56 7 6 30 3 4 29 63 66 54 44 22 93 2 0 8 chain 230909 chr7 159138663 + 50271036 50273664 L1PA5 6144 - 2 2633 17258 7 7 0 104 0 1 35 0 1 700 1 0 38 1 0 795 0 3 8 0 1 515 3 4 55 0 1 350 0 4 9 chain 91576 chr7 159138663 + 50279352 50280727 L1PB2 3958 + 2382 3711 39098 35 0 1 65 2 0 6 33 11 216 4 5 191 30 17 72 0 1 194 0 2 6 3 4 71 7 9 21 15 13 39 1 0 16 11 6 56 2 0 11 5 1 89 1 0 78 1 0 63 2 1 29 chain 94274 chr7 159138663 + 50318438 50319644 L1PA8 5853 + 4657 5853 38272 129 0 1 219 1 0 4 1 0 554 1 0 36 11 8 71 18 16 45 2 1 19 1 0 23 1 0 70 chain 6541 chr7 159138663 + 50360105 50360277 L1MA5A 2387 - 94 232 180913 63 81 47 28 chain 24594 chr7 159138663 + 50479874 50480165 AluSg 306 + 16 305 107024 279 2 0 10 chain 3347 chr7 159138663 + 50495785 50495840 MLT1F2 592 - 0 56 218103 35 4 5 16 chain 7619 chr7 159138663 + 50503088 50503180 U6 107 + 11 103 173418 92 chain 177056 chr7 159138663 + 50526623 50528755 SVA_D 2077 + 0 2070 21247 19 0 3 741 0 40 114 0 37 82 0 2 175 1 0 174 74 1 13 53 0 77 17 0 592 chain 3984 chr7 159138663 + 50527929 50527973 SVA_D 2077 + 1084 1129 133035 8 0 1 36 chain 1994 chr7 159138663 + 50527973 50528003 SVA_D 2077 + 1256 1286 65579 30 chain 3522 chr7 159138663 + 50528016 50528069 SVA_D 2077 + 1299 1352 65579 53 chain 13811 chr7 159138663 + 50574032 50574191 L1PA5 6144 + 5964 6124 145216 122 0 1 37 chain 27050 chr7 159138663 + 50578397 50578701 AluYk4 311 + 0 304 96112 304 chain 393917 chr7 159138663 + 50581785 50587569 L1PB1 5432 + 60 5413 10326 341 1 0 11 1 0 181 0 1 45 90 0 170 1 9 179 5 11 68 0 1 318 1 0 7 23 0 7 0 5 117 6 10 62 0 6 721 25 26 65 7 6 73 2 0 28 2 1 60 2 0 5 0 2 295 0 3 26 19 24 287 6 0 68 0 1 398 1 7 14 6 2 15 1 2 28 0 1 42 313 0 147 1 0 205 0 1 53 1 0 402 13 9 81 2 1 103 3 4 247 0 1 40 15 11 24 1 0 9 16 11 9 2 0 10 0 4 39 2 1 16 1 0 44 1 0 15 3 0 7 15 5 19 8 5 14 6 4 20 1 0 15 8 6 13 1 0 9 chain 4199 chr7 159138663 + 50604312 50604399 MLT1D 503 + 380 443 204554 55 24 0 8 chain 545150 chr7 159138663 + 50638542 50644673 L1PA4 6152 - 9 6146 2056 1172 0 1 618 0 4 1044 0 1 3297 chain 7987 chr7 159138663 + 50644677 50644778 MER11B 1079 + 979 1079 171133 72 1 0 28 chain 4915 chr7 159138663 + 50645742 50645914 HERVK11-int 2540 + 773 905 196120 20 77 41 44 9 6 7 1 0 14 chain 31237 chr7 159138663 + 50646523 50646983 LTR7B 505 + 0 503 82101 94 11 21 69 6 13 28 3 27 26 0 2 38 0 1 43 1 0 26 0 1 52 14 13 49 chain 79365 chr7 159138663 + 50648584 50649677 HERVK11-int 2540 + 1197 2234 43880 18 22 11 27 12 1 36 21 1 102 1 0 337 5 0 88 1 0 17 1 0 183 13 12 74 10 5 125 chain 9176 chr7 159138663 + 50655886 50656005 L1MA4 2864 + 2575 2691 164673 100 3 0 16 chain 23561 chr7 159138663 + 50787080 50787387 L1PA8 5853 + 5553 5853 112793 11 1 0 44 2 0 70 2 1 61 2 1 10 1 0 9 1 0 93 chain 22268 chr7 159138663 + 50840646 50840994 THE1B 368 - 0 361 119039 37 7 6 74 43 53 29 1 0 145 0 5 12 chain 34610 chr7 159138663 + 50845292 50845776 L1PA8 5853 + 5374 5848 76741 190 1 0 44 2 0 71 1 0 9 19 14 37 1 0 21 2 1 82 0 1 4 chain 8548 chr7 159138663 + 50896558 50896695 MLT1A 405 + 221 356 168027 61 11 12 8 3 0 11 0 1 20 1 0 22 chain 5392 chr7 159138663 + 50899485 50899546 MER3 215 + 14 75 191064 61 chain 81903 chr7 159138663 + 50912824 50913866 MER11C 1089 + 4 1057 42801 246 0 1 62 0 4 69 1 0 146 60 63 93 0 4 12 1 0 33 0 1 319 chain 14782 chr7 159138663 + 50914262 50914424 L1PA3long 6157 + 5996 6157 141995 141 1 0 20 chain 288133 chr7 159138663 + 50940837 50945859 L1PA10 4194 + 262 4161 14155 9 2 0 15 1 0 8 58 32 9 2 0 19 1 0 9 9 7 10 5 0 15 22 10 4 0 1 78 3 2 238 2 0 746 1 2 167 20 25 79 14 16 5 2 0 205 0 1 634 0 5 6 1 2 35 10 0 20 5 9 53 0 1 210 23 11 12 22 13 239 25 26 109 1 2 54 0 1 520 1055 0 134 7 6 29 0 2 5 2 0 4 3 0 34 1 0 11 chain 86724 chr7 159138663 + 50944638 50945591 L1PA3long 6157 + 5191 6144 40871 953 chain 466128 chr7 159138663 + 50954624 50960231 L1PA6 6164 + 70 6162 8183 166 0 2 24 2 1 87 6 5 163 0 2 47 1 0 18 5 1 206 17 0 15 0 17 371 8 9 44 0 1 1084 0 1 372 29 28 111 0 2 342 0 1 168 0 2 168 1 2 663 0 1 4 1 0 135 2 0 479 12 483 730 0 15 116 4 0 6 chain 556249 chr7 159138663 + 50966539 50972571 L1PA2 6032 + 0 6032 694 2240 0 1 846 1 0 2945 chain 34931 chr7 159138663 + 50991408 50991883 MER75 514 - 11 471 76294 5 0 1 200 4 0 120 1 3 33 15 0 34 2 3 61 chain 13371 chr7 159138663 + 51001039 51001241 L1PB2 3958 - 120 317 146813 63 1 0 18 4 0 6 4 6 63 2 1 19 1 0 21 chain 30404 chr7 159138663 + 51032624 51032977 L1PA3long 6157 - 0 354 83677 239 8 9 106 chain 34590 chr7 159138663 + 51044590 51045040 MER4A1 472 - 0 472 76768 220 1 22 107 0 1 69 1 0 5 9 10 38 chain 30673 chr7 159138663 + 51057767 51058128 L1PA6 6164 - 7 368 83088 361 chain 6727 chr7 159138663 + 51062323 51062402 L1PA8 5853 + 5774 5853 179494 79 chain 28037 chr7 159138663 + 51064516 51064942 L1PA16 3655 + 3055 3473 92871 50 8 7 13 1 2 77 6 5 50 2 1 24 14 8 181 chain 4341 chr7 159138663 + 51085886 51085999 HAL1-2a_MD 234 - 5 131 202711 12 18 0 15 21 0 21 4 56 22 chain 23044 chr7 159138663 + 51086318 51086602 AluSp 311 + 11 296 115424 211 1 2 72 chain 29185 chr7 159138663 + 51178263 51178800 L1PB1 5432 - 14 521 88120 14 1 0 9 0 3 10 13 12 24 24 19 18 26 13 15 1 0 44 1 0 16 2 1 53 2 0 9 39 33 11 1 0 11 1 0 192 chain 13045 chr7 159138663 + 51184646 51184786 L1PA5 6144 - 14 154 148053 140 chain 4817 chr7 159138663 + 51185986 51186041 MLT1E1A 663 - 101 156 197156 55 chain 45631 chr7 159138663 + 51214993 51215905 LTR10C 591 - 0 591 62374 79 0 2 187 0 1 180 326 4 92 14 12 34 chain 280995 chr7 159138663 + 51232452 51236600 L1MA2 4263 + 4 4051 14584 18 2 1 81 33 35 23 2 0 12 15 43 26 12 11 18 0 1 69 17 32 51 0 3 27 11 18 10 1 0 121 1 0 21 0 5 239 0 1 268 0 1 261 0 2 5 1 0 9 0 3 75 0 1 56 3 7 319 11 14 5 2 0 74 1 0 125 1 0 89 8 9 225 0 1 106 5 7 8 1 0 13 0 4 87 1 0 148 6 21 98 0 1 156 6 11 109 0 10 123 0 1 264 4 0 5 204 0 70 1 0 148 3 0 60 0 1 86 13 9 25 0 11 50 chain 81764 chr7 159138663 + 51263100 51264239 L1PA13 3608 - 126 1268 42864 16 1 0 18 9 5 24 0 1 22 9 5 57 1 0 59 4 1 15 0 21 50 0 1 27 1 0 26 3 0 129 1 0 589 21 19 57 chain 25044 chr7 159138663 + 51270915 51271182 AluY 311 + 38 306 104572 94 0 1 173 chain 22907 chr7 159138663 + 51272251 51272535 AluSc 308 - 13 298 116078 53 7 8 224 chain 143609 chr7 159138663 + 51275134 51276761 SVA_D 2077 + 42 2077 25542 848 0 396 28 0 1 25 1 2 46 0 1 4 10 8 44 1 0 419 0 13 182 1 0 18 chain 5752 chr7 159138663 + 51309831 51309921 MER51A 677 + 176 257 187625 23 9 0 58 chain 6242 chr7 159138663 + 51363015 51363089 L1PA8 5853 + 5767 5841 183233 74 chain 23607 chr7 159138663 + 51398979 51399600 MER41C 542 - 237 542 112543 70 317 0 185 0 1 49 chain 3527 chr7 159138663 + 51402106 51402178 ERVL-B4-int 2334 - 2161 2221 214935 18 19 7 35 chain 4405 chr7 159138663 + 51429961 51430051 HAL1-2a_MD 234 + 107 195 201884 22 9 0 17 17 24 25 chain 2668 chr7 159138663 + 51438434 51438577 L1P4a 3072 + 298 441 230800 16 100 100 27 chain 32260 chr7 159138663 + 51511476 51511957 MLT2A1 477 - 0 477 80421 44 10 0 14 26 22 11 0 7 6 3 1 39 0 1 8 1 0 150 1 5 26 0 1 142 chain 58959 chr7 159138663 + 51514740 51515609 MER61-int 3695 + 1 3690 53421 21 0 1 27 1 0 49 4 0 9 0 1 89 39 0 61 9 2873 13 0 1 4 2 0 189 1 0 16 4 3 260 0 1 71 chain 37840 chr7 159138663 + 51554062 51554513 L1PA7 6471 - 1 461 72350 258 0 8 72 0 1 121 chain 184878 chr7 159138663 + 51559225 51563580 L1MA1 4479 - 290 4251 20510 17 7 0 17 2 0 4 1 0 9 4 3 32 2 0 23 0 1 5 8 7 119 3 0 6 1 0 13 0 1 73 1 0 10 22 23 71 1 0 16 2 0 25 3 2 193 2 0 130 3 0 42 0 1 81 4 0 14 2 1 20 0 2 51 4 0 20 2 0 68 0 1 100 4 3 27 2 1 54 0 5 32 1 0 9 1 0 53 1 0 33 2 0 103 2 1 65 1 0 32 4 14 261 1 0 110 6 7 12 4 0 51 17 26 127 0 1 30 24 25 68 1 0 8 1 2 36 1489 1123 106 31 30 142 17 10 21 1 2 67 13 11 52 chain 6227 chr7 159138663 + 51563061 51563130 L1PA3long 6157 - 0 69 183347 69 chain 23279 chr7 159138663 + 51570971 51571392 MSTA 426 - 0 426 114299 81 7 8 85 92 95 129 1 2 26 chain 517083 chr7 159138663 + 51598281 51604934 L1PA7 6471 - 19 6471 5476 24 0 1 38 0 1 288 0 1 247 0 1 6 4 3 137 8 12 77 0 2 8 1 0 257 1 0 51 4 10 88 0 1 525 0 8 315 0 1 252 266 0 96 6 1 21 0 1 27 2 1 304 0 1 143 1 0 109 6 0 229 3 4 277 0 54 191 1 2 115 0 2 249 0 11 363 0 3 455 6 0 85 0 1 279 0 1 356 30 28 102 0 1 327 17 2 56 0 1 200 chain 244117 chr7 159138663 + 51605662 51609307 L1PB1 5432 - 10 3515 16554 18 1 0 12 1 0 22 1 0 16 36 31 12 9 0 15 4 1 15 6 5 39 18 16 50 20 14 17 2 1 22 75 0 13 7 0 42 1 16 62 1 0 6 0 1 27 0 21 67 1 28 20 2 1 14 0 1 171 1 0 6 2 0 124 0 1 105 0 1 45 2 1 61 9 17 278 1 0 9 8 4 221 28 17 15 0 2 54 1 3 49 0 2 27 0 1 4 1 0 374 1 0 260 4 5 105 0 2 15 2 0 230 5 4 92 1 0 36 0 1 58 82 0 438 7 3 39 chain 3658 chr7 159138663 + 51608760 51608806 L1PB1 5432 - 3055 3101 212596 46 chain 520425 chr7 159138663 + 51619842 51625988 L1PA6 6164 - 5 6164 5113 568 0 2 277 0 4 659 2 0 927 0 1 59 0 3 493 0 2 110 1 0 17 1 2 1073 5 4 1391 1 0 48 0 2 100 0 1 178 0 2 236 chain 414547 chr7 159138663 + 51639257 51644947 L1PB1 5432 - 12 5399 9681 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 14 8 0 17 3 0 15 1 0 43 2 1 16 3 2 49 3 1 11 5 1 11 1 0 12 1 0 18 285 0 11 1 2 100 0 11 364 3 0 736 0 1 12 1 0 152 2 15 457 1 0 327 11 22 63 7 4 153 12 1 59 0 5 7 17 12 57 0 4 48 0 1 1095 17 0 417 1 3 334 0 2 272 3 2 7 0 1 275 0 1 29 1 2 19 chain 545676 chr7 159138663 + 51661706 51667843 L1PA4 6152 - 0 6151 1992 857 0 1 83 1 12 1298 0 2 722 3 0 6 0 2 856 1 0 1077 1 0 1043 0 3 189 chain 112723 chr7 159138663 + 51670862 51672101 L1PA3long 6157 - 760 1999 33471 1239 chain 59782 chr7 159138663 + 51672102 51672779 L1PA3long 6157 + 5485 6157 52940 358 5 0 314 chain 4251 chr7 159138663 + 51686785 51686837 L1MA7 2200 + 1882 1934 203853 52 chain 41334 chr7 159138663 + 51689377 51689911 MER41C 542 - 0 540 67491 199 8 10 16 3 5 250 0 1 11 0 1 47 chain 20973 chr7 159138663 + 51690783 51691143 THE1A 353 + 0 353 124022 33 6 21 55 2 1 89 2 0 5 0 1 4 1 0 5 4 0 10 28 20 57 10 3 49 chain 29349 chr7 159138663 + 51691909 51692220 AluYb9 318 + 0 310 87303 200 1 0 110 chain 22745 chr7 159138663 + 51700271 51700608 THE1C 375 + 0 350 116847 174 5 8 11 13 6 7 0 7 5 3 0 9 2 15 108 chain 29031 chr7 159138663 + 51714472 51714776 AluYb8 318 - 14 318 88850 304 chain 10490 chr7 159138663 + 51718315 51718563 MSTB1 431 + 142 389 158289 38 4 0 12 10 13 8 0 1 39 23 25 33 42 39 39 chain 11011 chr7 159138663 + 51731482 51731674 L1MA5A 2387 - 160 343 156170 6 3 0 27 13 10 76 1 0 45 9 7 12 chain 8646 chr7 159138663 + 51737456 51737553 L1PA4 6152 - 3742 3839 167499 97 chain 8930 chr7 159138663 + 51737554 51737652 L1PA4 6152 - 3839 3937 165976 98 chain 104998 chr7 159138663 + 51737652 51738833 L1PA4 6152 - 3938 5122 35500 1013 0 3 168 chain 323169 chr7 159138663 + 51738833 51742677 L1PA4 6152 + 2415 6135 12474 77 5 6 23 1 2 161 91 0 778 40 0 188 0 3 285 2 1 245 1 0 133 2 0 321 0 5 683 2 1 4 0 1 659 9 0 6 4 14 124 chain 17901 chr7 159138663 + 51745874 51746088 L1PA6 6164 + 5950 6162 133096 60 0 1 141 3 0 10 chain 182398 chr7 159138663 + 51749715 51751724 L1PA3long 6157 + 4148 6157 20747 2009 chain 33486 chr7 159138663 + 51754362 51754794 L1PA7 6471 + 6036 6470 78431 100 5 6 51 8 10 82 1 0 185 chain 9006 chr7 159138663 + 51755479 51755587 L1PA5 6144 + 6040 6143 165560 95 5 0 8 chain 2940 chr7 159138663 + 51771466 51771500 MADE2 80 + 45 79 226333 34 chain 20529 chr7 159138663 + 51774953 51775262 L1PA8 5853 - 1 312 125547 30 0 9 53 1 0 19 2 1 39 9 8 14 1 0 19 8 0 7 0 8 37 2 0 44 1 0 23 chain 33643 chr7 159138663 + 51785050 51785541 MLT2A1 477 + 0 472 78183 142 0 1 26 0 4 212 73 49 38 chain 139683 chr7 159138663 + 51855410 51856943 L1PA3long 6157 + 4624 6157 26193 1533 chain 4369 chr7 159138663 + 51868090 51868249 L1MD 993 - 232 393 202326 20 93 95 46 chain 103677 chr7 159138663 + 51873349 51874567 LTR12C 1709 + 0 1709 35808 373 0 8 82 5 0 5 2 0 147 1 0 35 0 485 89 0 4 54 0 1 263 0 1 162 chain 166116 chr7 159138663 + 51882946 51884854 L1PA5 6144 - 0 1909 22505 459 0 2 1018 8 7 423 chain 46217 chr7 159138663 + 51884854 51885380 L1PA5 6144 + 3680 4206 61769 526 chain 537806 chr7 159138663 + 51901168 51907183 L1PA3long 6157 - 1 6157 3182 842 0 4 515 0 2 719 0 1 372 0 1 1419 0 3 784 0 1 589 0 128 622 0 1 153 chain 20617 chr7 159138663 + 51908304 51908591 L1PA8 5853 - 0 281 125234 93 1 0 19 2 1 45 19 17 70 2 0 36 chain 55971 chr7 159138663 + 51912838 51913836 MER11A 1151 + 6 1147 55140 39 13 112 21 8 0 51 1 0 4 20 211 94 0 1 35 1 0 105 0 2 129 0 26 26 150 0 21 18 0 37 0 1 60 16 17 149 chain 12092 chr7 159138663 + 51928826 51928959 L1PA5 6144 - 14 147 151827 133 chain 42951 chr7 159138663 + 51937545 51938026 LTR7 482 + 0 482 65477 233 1 0 153 0 2 94 chain 128794 chr7 159138663 + 51938028 51939785 HERVH-int 3825 + 0 1617 28366 489 2 0 11 101 31 39 65 0 10 1 0 24 29 0 15 4 21 10 6 26 22 2 1 53 3 4 7 0 2 13 0 3 442 16 1 393 chain 3052 chr7 159138663 + 51938567 51938622 HERVH-int 3825 + 531 584 202849 39 1 0 10 1 0 4 chain 2860 chr7 159138663 + 51938702 51938734 HERVH-int 3825 + 538 570 227674 32 chain 27484 chr7 159138663 + 51941637 51941931 AluYa5 310 + 0 310 94699 52 0 16 242 chain 17915 chr7 159138663 + 51948153 51948375 L1PA7 6471 - 2 225 133070 158 4 5 60 chain 548283 chr7 159138663 + 51957605 51963637 L1PA2 6032 + 2 6031 1663 916 1 0 203 1 0 157 0 5 957 0 1 328 1 0 1496 11 1 1116 0 4 845 chain 96220 chr7 159138663 + 51967966 51969154 LTR12C 1709 - 13 1709 37759 49 0 233 132 0 1 51 3 12 100 4 2 4 1 0 85 0 278 278 2 1 8 9 0 462 chain 321984 chr7 159138663 + 51991926 51995902 L1PA7 6471 - 1 5730 12523 849 2 1 137 0 1 54 2 1 336 22 0 475 0 1 554 1 0 4 6 1765 679 0 1 520 0 1 87 0 18 6 4 0 63 5 6 170 chain 253788 chr7 159138663 + 52009012 52012175 L1P2 5180 + 3 3219 16042 109 14 13 16 0 11 95 1 0 150 4 8 103 9 7 82 0 4 117 2 1 16 0 1 4 4 3 42 3 18 130 0 25 17 0 1 464 1 0 781 1 2 954 8 6 36 chain 31564 chr7 159138663 + 52012833 52013217 L1PA7 6471 - 14 399 81538 131 15 16 238 chain 9378 chr7 159138663 + 52039851 52039970 MER31A 484 - 224 344 163661 101 0 1 18 chain 13343 chr7 159138663 + 52045549 52045703 L1PA5 6144 + 5947 6101 146919 154 chain 9233 chr7 159138663 + 52080485 52080715 MSTD 398 + 14 252 164379 101 79 97 17 16 6 17 chain 3051 chr7 159138663 + 52090611 52090797 L1MC4 1079 + 133 312 223981 24 62 52 16 63 66 21 chain 39664 chr7 159138663 + 52101199 52101686 MER9a3 513 - 0 498 69807 339 9 10 42 0 10 97 chain 28586 chr7 159138663 + 52107120 52107428 AluYg6 310 + 0 308 90803 308 chain 25803 chr7 159138663 + 52112605 52112918 L1PA8 5853 - 532 844 100853 234 1 0 78 chain 29986 chr7 159138663 + 52112925 52113381 L1PA8 5853 + 5358 5853 84848 34 0 34 138 1 0 41 5 3 54 1 2 11 28 26 39 2 1 19 1 0 38 0 11 44 chain 35627 chr7 159138663 + 52125294 52125724 L1PA7 6471 - 2 430 75372 10 2 0 418 chain 42032 chr7 159138663 + 52125725 52126231 L1PA7 6471 + 5526 6035 66579 95 0 3 411 chain 82185 chr7 159138663 + 52143123 52144215 L1PA8 5853 - 0 1089 42687 85 5 12 15 2 1 45 3 1 15 2 1 66 9 7 5 1 0 28 0 3 5 4 0 293 0 3 5 3 0 254 2 0 245 chain 12909 chr7 159138663 + 52144215 52144376 L1PA8 5853 + 4585 4746 148288 138 1 0 7 0 1 15 chain 4438 chr7 159138663 + 52164408 52164611 L1MC1 2226 + 2008 2183 201472 34 114 88 6 1 0 13 7 6 28 chain 84025 chr7 159138663 + 52169158 52170117 L1PA5 6144 - 4242 5212 41894 534 0 1 70 0 9 182 0 1 173 chain 367111 chr7 159138663 + 52170117 52174328 L1PA5 6144 + 1919 6138 11184 387 1 0 857 0 1 120 0 1 214 3 4 169 0 1 211 0 1 413 7 6 935 0 4 389 1 0 245 8 11 84 1 0 4 0 1 58 1 0 103 chain 38941 chr7 159138663 + 52180976 52181433 LTR2 463 + 0 463 70814 54 0 3 311 0 1 72 0 2 20 chain 37573 chr7 159138663 + 52183311 52183778 MER4A1 472 + 0 472 72720 80 0 1 232 0 2 33 0 2 122 chain 11894 chr7 159138663 + 52196372 52196510 AluYc 301 + 148 286 152628 138 chain 28101 chr7 159138663 + 52199146 52199448 AluYa5 310 - 9 310 92645 175 1 0 126 chain 44068 chr7 159138663 + 52217193 52217734 MER41A 554 - 0 541 64135 541 chain 28514 chr7 159138663 + 52253279 52253705 MLT2A1 477 + 0 469 91123 33 9 14 121 1 5 30 3 4 122 5 6 45 0 1 4 18 49 35 chain 12531 chr7 159138663 + 52258988 52259177 MER30 238 + 36 238 150113 58 23 39 57 3 0 48 chain 10531 chr7 159138663 + 52262814 52262995 MER30 238 - 0 237 158126 44 0 29 41 8 17 60 13 31 15 chain 8160 chr7 159138663 + 52263220 52263327 L1MB3 1562 + 779 886 170170 22 2 0 6 0 2 77 chain 14759 chr7 159138663 + 52264679 52264877 MER30 238 + 26 238 142071 83 4 0 10 0 21 53 3 0 45 chain 3553 chr7 159138663 + 52268950 52268989 L1MC2 1988 + 479 518 214487 39 chain 29940 chr7 159138663 + 52274866 52275181 AluYb8 318 + 0 315 85000 315 chain 14641 chr7 159138663 + 52287262 52287487 L1PA8 5853 - 0 221 142451 89 12 11 12 2 1 51 1 0 8 7 6 43 chain 10247 chr7 159138663 + 52287487 52287616 L1PA8 5853 + 5478 5606 159385 86 1 0 42 chain 7974 chr7 159138663 + 52288152 52288244 MER30 238 - 10 102 171203 92 chain 7238 chr7 159138663 + 52302225 52302314 MSTA 426 + 319 408 175845 89 chain 29449 chr7 159138663 + 52323655 52323965 AluYg6 310 - 0 310 86858 310 chain 50775 chr7 159138663 + 52340540 52341190 PABL_A 660 + 0 660 58448 84 0 9 18 10 9 158 7 0 42 0 5 262 0 4 69 chain 13196 chr7 159138663 + 52362603 52363050 LTR12 884 + 162 861 147481 34 1 26 37 25 0 15 3 45 59 210 420 63 chain 1996 chr7 159138663 + 52362777 52362825 LTR12 884 + 329 378 201352 7 1 2 40 chain 154908 chr7 159138663 + 52363091 52364965 HERV9-int 5642 + 0 1870 23990 358 1 2 435 1 0 251 3 0 61 7 3 408 0 3 349 chain 15380 chr7 159138663 + 52369395 52369587 LTR12C 1709 - 0 191 140263 84 14 13 94 chain 88984 chr7 159138663 + 52369602 52370682 LTR12C 1709 - 0 1238 40011 84 5 4 63 1 0 330 0 4 106 4 2 4 1 0 127 0 159 355 chain 31181 chr7 159138663 + 52382985 52383371 L1PA7 6471 + 6085 6470 82193 72 0 4 77 16 11 221 chain 55103 chr7 159138663 + 52395226 52395882 L1P2 5180 - 2738 3399 55640 123 3 0 95 0 1 14 1 3 141 0 1 137 0 2 69 0 1 30 0 1 43 chain 313936 chr7 159138663 + 52396567 52400578 L1PA5 6144 + 2451 6129 12860 385 330 4 175 14 0 187 1 0 51 0 4 189 1 0 59 1 3 984 0 1 264 0 1 536 2 0 177 0 4 157 1 0 497 chain 245523 chr7 159138663 + 52402885 52406367 HERVH-int 3825 - 0 3825 16481 92 0 1 88 0 227 119 1 0 282 1 0 40 163 0 134 0 1 423 5 4 5 0 1 306 12 17 70 4 0 300 0 27 257 9 0 205 15 0 39 56 59 348 1 0 11 8 274 5 0 3 12 61 65 77 1 0 158 0 1 174 chain 18155 chr7 159138663 + 52427582 52427872 THE1D 372 - 61 372 132449 64 20 35 18 27 34 58 1 0 102 chain 97497 chr7 159138663 + 52430252 52431555 LTR12C 1709 + 86 1709 37425 31 0 1 93 0 3 5 3 0 38 18 21 5 3 0 12 0 1 42 18 61 88 0 1 53 5 4 105 0 278 184 1 0 4 4 2 106 0 4 260 3 1 69 1 0 54 14 13 84 chain 47147 chr7 159138663 + 52434824 52435733 L1PA8 5853 - 0 616 61091 93 291 0 18 16 15 34 2 1 10 1 0 74 2 0 44 1 0 187 1 4 37 0 1 98 chain 244552 chr7 159138663 + 52455346 52458792 HERVL-int 5654 + 2500 5654 16528 286 0 1 503 6 0 48 0 21 475 7 8 526 10 9 260 0 1 790 5 1 86 390 85 54 chain 396243 chr7 159138663 + 52461871 52467423 L1PB1 5432 - 14 5408 10229 14 1 0 12 1 0 22 1 0 24 4 0 14 8 5 19 13 6 6 3 0 16 2 1 42 1 0 18 1 0 52 2 0 6 9 5 7 1 0 15 8 7 117 6 8 160 0 14 203 1 0 4 30 32 265 0 1 95 57 21 36 2 1 184 1 3 27 1 0 229 1 0 416 0 11 236 0 3 152 0 1 4 1 0 10 0 3 53 1 0 210 2 0 100 90 0 23 13 10 1082 7 0 10 29 1 7 1 0 546 0 1 89 5 12 341 1 0 382 chain 3798 chr7 159138663 + 52493974 52494022 L1MA4 2864 + 2746 2796 210415 23 0 2 25 chain 21899 chr7 159138663 + 52522483 52522751 AluY 311 + 31 300 120623 95 0 1 173 chain 4534 chr7 159138663 + 52550641 52550691 MER51A 677 - 425 475 200421 50 chain 12576 chr7 159138663 + 52559953 52560213 MER47A 366 + 43 324 149932 17 62 65 7 0 5 9 0 12 35 8 9 122 chain 88648 chr7 159138663 + 52562612 52563646 L1PA5 6144 - 6 1043 40128 139 1 2 192 1 0 169 2 0 333 0 5 197 chain 151051 chr7 159138663 + 52648477 52650244 L1PA7 6471 + 4693 6466 24468 540 0 1 331 12 5 52 0 8 241 1 0 260 0 1 290 0 4 40 chain 8601 chr7 159138663 + 52664791 52664952 LOR1-int 1871 - 1619 1781 167729 39 32 35 6 1 0 6 2 1 75 chain 3834 chr7 159138663 + 52709150 52709294 MER58C 217 - 9 166 209873 13 14 0 8 60 86 43 0 1 6 chain 135143 chr7 159138663 + 52711771 52713266 L1PA4 6152 - 1 1496 26983 1495 chain 29789 chr7 159138663 + 52713267 52713595 L1PA4 6152 + 4320 4648 85513 328 chain 3332 chr7 159138663 + 52755674 52755748 L1MC1 2226 - 205 274 218366 29 3 1 11 11 8 20 chain 30980 chr7 159138663 + 52765813 52766215 L1PA8 5853 - 0 395 82549 93 1 0 19 2 1 52 1 0 6 1 0 74 2 0 41 4 3 106 chain 22343 chr7 159138663 + 52792632 52792988 THE1A 353 - 0 353 118733 135 12 12 5 2 0 11 12 13 4 1 0 79 1 0 11 2 3 31 0 1 35 2 0 13 chain 66183 chr7 159138663 + 52821630 52822523 MER11A 1151 - 0 1151 50015 59 0 7 57 0 1 165 34 283 5 0 1 120 1 0 65 1 2 16 0 4 66 4 6 63 0 4 28 2 0 21 8 0 178 chain 23868 chr7 159138663 + 52947169 52947466 AluSc 308 + 10 305 111091 20 2 0 275 chain 134905 chr7 159138663 + 52960275 52961754 L1PA3long 6157 - 1293 2774 27029 911 0 1 192 0 1 376 chain 115613 chr7 159138663 + 52961754 52963027 L1PA3long 6157 + 4868 6142 32557 83 0 1 1190 chain 6556 chr7 159138663 + 52993928 52994004 L1PA5 6144 + 6068 6144 180806 76 chain 61010 chr7 159138663 + 52997463 52998141 L1PA3long 6157 - 943 1620 52130 4 1 0 673 chain 84054 chr7 159138663 + 52998141 52999080 L1PA3long 6157 + 5210 6157 41881 150 3 10 637 0 1 149 chain 21141 chr7 159138663 + 53010898 53011178 AluSc 308 + 8 287 123403 119 1 0 14 3 0 6 1 4 136 chain 53158 chr7 159138663 + 53024025 53024707 LTR30 714 + 0 714 56918 213 5 4 228 15 16 186 0 32 35 chain 2725 chr7 159138663 + 53025987 53026088 LTR48 738 - 561 648 229791 25 58 44 18 chain 22747 chr7 159138663 + 53072092 53072452 LTR12C 1709 + 769 1175 116839 68 1 0 206 15 56 13 38 44 19 chain 551762 chr7 159138663 + 53094014 53100029 L1PA2 6032 - 4 6020 1215 136 0 7 6 6 0 2587 0 2 2363 0 1 480 0 1 74 5 1 358 chain 7304 chr7 159138663 + 53122276 53122399 L1MA6 2487 + 2159 2266 175408 68 21 5 34 chain 87399 chr7 159138663 + 53153254 53154396 MER11A 1151 - 5 1151 40607 49 11 10 228 13 20 450 0 1 92 0 2 61 4 0 34 2 0 21 7 0 91 0 8 79 chain 16008 chr7 159138663 + 53203745 53203995 THE1B 368 + 6 280 138332 38 0 15 110 1 0 29 35 45 37 chain 9793 chr7 159138663 + 53215442 53215584 MER107 203 + 0 147 161637 34 17 22 91 chain 23224 chr7 159138663 + 53244413 53244691 AluSc 308 + 30 308 114568 278 chain 8440 chr7 159138663 + 53268046 53268174 MER85 139 - 0 139 168622 40 0 10 42 15 16 31 chain 44981 chr7 159138663 + 53284546 53285152 LTR12_ 688 + 0 663 63081 24 10 11 119 0 24 293 1 0 75 2 35 82 chain 6248 chr7 159138663 + 53290379 53290456 MADE1 96 + 2 96 183179 29 0 17 48 chain 117106 chr7 159138663 + 53302196 53303624 Harlequin-int 5206 + 1067 2513 32088 41 0 1 96 0 3 316 0 1 246 9 10 218 0 13 147 6 5 246 0 1 98 1 0 4 chain 28123 chr7 159138663 + 53306928 53307301 LTR7 482 - 6 481 92558 62 0 4 100 0 3 46 8 50 64 0 53 93 chain 13825 chr7 159138663 + 53312121 53312276 L1PA4 6152 + 5731 5886 145160 155 chain 499089 chr7 159138663 + 53350131 53356160 L1PA6 6164 - 35 6164 6890 473 0 12 72 0 25 178 0 3 449 0 2 67 0 14 280 0 20 63 0 3 217 1 0 1141 0 1 782 0 2 496 1 3 374 1 0 421 0 1 177 0 1 342 11 10 97 29 36 38 60 70 259 chain 50349 chr7 159138663 + 53390000 53390663 LTR12_ 688 - 0 688 58757 151 0 1 14 7 14 123 8 0 239 0 25 121 chain 226054 chr7 159138663 + 53395578 53398248 L1PA5 6144 - 0 2589 17529 798 0 3 53 66 0 369 0 4 143 22 0 811 0 1 287 1 0 120 chain 4296 chr7 159138663 + 53396429 53396481 L1PA5 6144 - 860 912 203270 52 chain 22744 chr7 159138663 + 53398249 53398515 L1PA5 6144 + 3308 3575 116852 230 0 1 36 chain 17871 chr7 159138663 + 53400787 53401053 L1PA8 5853 + 5590 5853 133193 20 2 0 39 0 1 24 11 10 4 1 0 10 0 2 43 1 0 14 3 2 94 chain 32976 chr7 159138663 + 53410963 53411396 MER4A1 472 + 0 455 79254 204 19 41 210 chain 36180 chr7 159138663 + 53415302 53415761 L1PA5 6144 + 5681 6142 74660 129 0 1 15 3 0 111 0 3 54 4 5 143 chain 11743 chr7 159138663 + 53433750 53433889 U1 164 + 0 138 153283 23 1 0 115 chain 83938 chr7 159138663 + 53452421 53453418 LTR12C 1709 - 516 1709 41935 76 2 0 6 1 0 74 0 200 533 1 0 304 chain 41385 chr7 159138663 + 53453451 53453983 MER41A 554 + 1 554 67428 92 0 1 295 0 25 21 5 0 119 chain 53264 chr7 159138663 + 53466686 53467295 L1PA5 6144 - 12 626 56849 113 0 3 404 1 3 91 chain 16502 chr7 159138663 + 53479808 53480141 L1PB1 5432 + 5114 5430 136912 20 1 0 10 1 0 14 5 1 9 12 10 42 2 1 15 1 0 43 2 1 16 8 12 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 29017 chr7 159138663 + 53482369 53482672 AluYg6 310 - 7 310 88917 303 chain 19634 chr7 159138663 + 53512277 53512529 L1PA7 6471 - 11 264 128302 136 6 7 110 chain 41863 chr7 159138663 + 53540186 53540719 MER41A 554 + 0 550 66815 161 1 3 224 0 15 147 chain 76822 chr7 159138663 + 53547835 53548803 L1PA8 5853 - 5 966 45073 88 1 0 18 10 9 40 1 0 14 2 1 70 2 0 41 0 1 556 2 0 123 chain 120759 chr7 159138663 + 53562532 53563953 LTR12C 1709 + 0 1709 30775 662 4 1 36 0 159 253 1 0 6 2 0 107 0 4 266 0 131 84 chain 11924 chr7 159138663 + 53568536 53568790 L1PB1 5432 - 6 238 152499 8 1 0 12 0 2 11 2 1 22 1 0 9 2 0 14 5 3 12 1 0 9 3 1 10 8 0 16 3 0 16 4 3 41 1 0 17 1 0 25 chain 4190 chr7 159138663 + 53615258 53615304 MADE1 96 - 50 96 204685 46 chain 254315 chr7 159138663 + 53642862 53646993 L1PB1 5432 + 18 5427 16013 9 17 0 112 0 4 146 0 1 24 32 1 86 2 0 127 19 17 92 0 4 698 0 1 56 8 11 214 324 1770 146 0 1 186 6 8 45 2 1 4 0 1 209 49 6 23 1 0 6 1 3 57 0 1 368 30 30 29 17 21 89 2 3 86 1 0 157 11 12 96 0 1 122 79 14 22 1 0 8 1 0 11 6 2 9 2 0 52 3 2 14 1 0 45 1 0 15 1 0 4 22 12 15 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 36855 chr7 159138663 + 53686713 53687359 THE1C-int 1605 + 0 617 73729 17 1 3 89 2 0 6 2 56 100 13 10 109 0 2 39 100 25 56 8 0 4 0 1 100 chain 47159 chr7 159138663 + 53687374 53687964 LTR10C 591 - 0 591 61079 81 0 2 177 0 1 191 3 1 138 chain 5880 chr7 159138663 + 53782070 53782188 MLT1E2 623 - 443 562 186371 33 0 1 29 30 31 21 1 0 4 chain 54056 chr7 159138663 + 53798634 53799441 L1PA14 3548 - 251 1045 56322 76 1 0 84 1 0 7 2 0 11 13 9 88 6 7 10 2 0 5 2 0 47 2 0 8 9 7 218 0 1 31 2 1 124 1 4 22 1 0 34 chain 3184 chr7 159138663 + 53802147 53802181 L1ME1 1623 - 449 483 221222 34 chain 30751 chr7 159138663 + 53831010 53831401 L1PB1 5432 + 4438 4828 82953 186 3 0 82 0 2 120 chain 8716 chr7 159138663 + 53843841 53843947 U2 167 + 9 115 167106 106 chain 118300 chr7 159138663 + 53852706 53854038 L1PA5 6144 + 4810 6144 31688 484 3 5 845 chain 43514 chr7 159138663 + 53858663 53859207 L1PA6 6164 - 2 824 64792 35 7 11 224 2 276 276 chain 5069 chr7 159138663 + 53896493 53896553 Tigger1 2417 - 8 68 194441 60 chain 4152 chr7 159138663 + 53906384 53906430 THE1B 368 + 0 46 205218 46 chain 29838 chr7 159138663 + 53931480 53931794 AluYb8 318 - 4 318 85320 314 chain 6266 chr7 159138663 + 53944625 53944714 MLT2B4 540 - 449 540 183038 46 4 6 39 chain 10126 chr7 159138663 + 53988834 53989366 LTR12D 1347 + 467 984 159967 68 110 183 55 269 181 30 chain 145332 chr7 159138663 + 54000120 54001946 L1PA8A 6298 + 4432 6288 25277 453 1 0 4 0 1 6 0 2 94 3 1 281 5 21 7 0 1 185 1 3 8 4 0 40 1 0 4 0 1 35 6 8 53 0 3 488 0 10 147 chain 48793 chr7 159138663 + 54022416 54023058 LTR12D 1347 - 14 942 59881 31 0 1 41 4 2 58 0 200 158 0 14 52 0 24 44 0 18 122 1 32 131 chain 470194 chr7 159138663 + 54024164 54029965 HERV9-int 5642 - 0 5630 8027 17 2 0 3 4 0 19 28 5 14 1 0 59 1 0 27 3 1 35 7 5 228 1 0 2928 0 1 406 3 4 80 4 25 470 87 13 55 1 0 137 1 0 4 4 1 31 79 0 283 1 0 708 4 5 66 chain 52584 chr7 159138663 + 54030031 54030680 LTR12_ 688 - 0 688 57245 418 0 14 100 0 25 131 chain 3585 chr7 159138663 + 54031998 54032083 MER34A1 583 - 165 250 213904 14 29 29 42 chain 2500 chr7 159138663 + 54077923 54077983 L1MA7 2200 - 456 514 233132 4 1 0 21 15 14 19 chain 94720 chr7 159138663 + 54088283 54089826 L1PB1 5432 - 10 1503 38160 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 19 8 4 1 0 15 1 0 45 1 0 11 8 7 40 2 0 10 24 18 4 1 0 8 1 0 24 17 16 131 2 0 154 0 1 172 1 0 18 7 13 33 3 11 15 1 0 107 37 0 284 6 9 92 19 25 31 15 16 57 chain 548252 chr7 159138663 + 54108992 54115161 L1PA3long 6157 - 0 6157 1672 154 0 1 183 0 1 798 1 2 371 1 4 2289 1 0 26 1 0 47 20 6 1630 2 0 645 chain 448008 chr7 159138663 + 54190015 54195636 HERVL-int 5654 - 0 5654 8811 427 0 1 359 0 15 362 0 1 88 3 4 688 1 4 78 2 1 170 8 0 263 0 1 70 0 12 735 13 0 7 0 13 438 1 0 5 7 8 172 6 8 113 2 6 333 0 2 425 8 0 11 0 1 183 0 1 54 0 3 108 0 1 209 6 4 5 0 2 6 0 1 25 1 2 42 0 1 5 7 6 67 1 0 5 1 2 101 chain 3265 chr7 159138663 + 54196854 54196895 HAL1-2a_MD 234 - 180 224 219694 24 0 3 17 chain 11222 chr7 159138663 + 54202498 54202664 L1PA8 5853 - 58 220 155337 35 1 0 18 1 0 52 10 8 49 chain 257418 chr7 159138663 + 54203109 54206000 L1PA4 6152 - 0 2892 15853 113 0 1 225 0 1 2305 1 0 247 chain 2982 chr7 159138663 + 54216261 54216328 MER21C 908 - 709 770 225432 21 24 18 22 chain 524323 chr7 159138663 + 54285818 54293001 L1PA4 6152 + 0 6143 4740 343 15 14 35 0 1 850 0 1 172 0 5 1332 0 6 190 0 2 220 5 4 334 1 0 429 0 1 110 0 1 626 1057 0 333 1 8 291 1 0 553 3 0 282 chain 210631 chr7 159138663 + 54297833 54300186 L1PA4 6152 - 9 2363 18445 1065 0 1 1288 chain 248521 chr7 159138663 + 54300186 54363534 L1PA4 6152 + 2265 6152 16334 906 1 0 606 59466 0 1524 6 8 658 1 0 174 0 5 6 chain 3016 chr7 159138663 + 54328847 54328885 L1MD2 1676 - 536 574 224686 38 chain 51584 chr7 159138663 + 54340326 54340927 L1PA4 6152 + 5540 6141 57902 601 chain 29730 chr7 159138663 + 54346151 54346582 MER4A1 472 - 10 472 85726 92 29 33 281 3 27 4 0 1 7 0 2 15 chain 344313 chr7 159138663 + 54373732 54377607 L1PA4 6152 - 9 3887 11777 18 0 1 665 0 1 205 0 1 1089 0 1 997 1 0 900 chain 210567 chr7 159138663 + 54377607 54379961 L1PA4 6152 + 3789 6143 18455 1288 0 1 223 2 1 841 chain 526512 chr7 159138663 + 54384793 54391966 L1PA4 6152 - 9 6152 4544 285 3 0 552 1 0 289 1 8 327 1057 0 632 0 1 110 0 1 429 1 0 334 5 4 220 0 2 191 0 1 1637 0 20 58 1 2 1040 chain 6819 chr7 159138663 + 54427583 54427661 U13_ 108 + 0 78 178800 78 chain 50664 chr7 159138663 + 54455100 54455746 PABL_A 660 - 2 660 58524 21 0 1 184 0 1 99 20 21 236 4 13 82 chain 9179 chr7 159138663 + 54458201 54458342 PABL_A-int 1935 - 1692 1830 164664 7 1 0 93 13 11 27 chain 53992 chr7 159138663 + 54461001 54461660 PABL_A 660 - 0 660 56371 254 8 0 316 0 9 81 chain 331913 chr7 159138663 + 54471458 54476054 L1PA11 4918 - 289 4874 12132 18 47 33 10 2 0 14 1 0 4 0 3 8 13 9 10 21 9 23 1 0 16 2 0 78 10 12 13 1 0 37 5 13 11 15 6 6 0 2 44 5 4 44 3 6 530 0 1 406 5 6 399 4 1 133 0 3 450 3 7 24 23 22 341 0 1 65 3 0 770 1 0 288 1 0 54 3 0 5 0 3 49 15 16 4 1 0 28 1 2 5 1 0 108 0 1 4 0 2 252 10 7 17 13 12 33 1 23 9 1 0 36 19 16 19 chain 12400 chr7 159138663 + 54479137 54479309 MER30 238 - 6 192 150637 108 4 0 6 1 19 53 chain 132853 chr7 159138663 + 54511196 54512827 SVA_A 1864 + 21 1861 27452 508 17 17 76 3 0 99 30 27 129 2 0 8 1 0 102 2 221 37 2 0 359 0 1 256 chain 44248 chr7 159138663 + 54516531 54517044 MER9a1 513 + 2 513 63883 11 2 0 500 chain 393077 chr7 159138663 + 54517693 54522360 HERVK9-int 4720 + 36 4719 10351 14 7 4 4 1 0 66 1 0 7 10 9 22 1 0 2307 1 2 256 0 1 238 0 4 57 0 1 24 0 4 975 2 14 674 chain 42400 chr7 159138663 + 54522375 54522873 MER9a1 513 + 13 513 66147 206 0 2 292 chain 9883 chr7 159138663 + 54524553 54524669 THE1D-int 1627 + 0 116 161163 116 chain 44210 chr7 159138663 + 54524669 54525182 MER9a1 513 - 0 513 63933 513 chain 16016 chr7 159138663 + 54544682 54544938 L1PA16 3655 - 36 266 138316 16 37 14 11 3 0 189 chain 540487 chr7 159138663 + 54566425 54572577 L1PA4 6152 - 1 6149 2734 1073 0 1 159 2 1 1409 0 1 336 1 0 1519 0 13 183 0 1 620 25 8 251 1 0 573 chain 382058 chr7 159138663 + 54577367 54582665 L1PB1 5432 - 10 5378 10694 18 1 0 13 1 0 21 1 0 24 2 0 14 55 38 12 2 1 17 0 1 19 29 27 40 10 8 11 16 11 33 5 0 7 1 4 49 3 4 234 0 60 49 0 2 77 3 0 271 0 2 596 8 0 22 0 1 188 10 49 28 0 4 625 10 14 90 2 1 37 1 2 79 9 14 179 6 5 273 0 1 433 0 1 100 4 5 190 24 11 5 2 0 7 1 0 92 1 2 364 0 1 42 8 9 7 1 0 354 5 7 29 0 4 378 5 7 45 chain 164408 chr7 159138663 + 54588740 54591119 L1PB1 5432 - 40 2374 22760 22 1 0 22 26 21 12 0 23 12 7 6 37 1 0 14 5 4 48 0 3 7 9 5 10 1 0 8 1 0 20 11 2 11 74 4 48 3 4 133 1 0 112 1 0 177 3 0 81 0 1 53 6 7 128 0 2 50 0 1 31 0 10 160 1 7 92 0 8 168 0 6 13 0 1 37 20 6 23 0 4 6 1 0 118 0 2 50 0 1 241 0 2 5 3 0 255 chain 75949 chr7 159138663 + 54591148 54592140 L1PB1 5432 - 2722 3719 45514 158 8 12 44 4 5 54 0 1 356 8 9 74 1 2 64 12 6 186 0 3 23 chain 5078 chr7 159138663 + 54592145 54592202 L1PB1 5432 - 3722 3779 194313 57 chain 15405 chr7 159138663 + 54665664 54665866 MER107 203 + 6 203 140185 61 0 1 118 7 1 16 chain 54238 chr7 159138663 + 54678573 54679179 L1PA4 6152 - 0 606 56200 606 chain 7159 chr7 159138663 + 54688737 54688823 U6 107 + 20 106 176340 86 chain 3102 chr7 159138663 + 54697827 54697860 L1MD2 1676 - 687 720 222887 33 chain 9231 chr7 159138663 + 54698313 54698479 L1PA15 4387 - 31 186 164390 28 21 14 44 6 3 50 1 0 16 chain 89543 chr7 159138663 + 54698481 54699721 MER4-int 2692 + 1408 2676 39798 26 1 0 31 14 20 93 0 1 173 1 3 136 1 0 32 0 1 84 0 4 100 0 1 8 4 0 20 0 1 8 6 5 27 4 0 92 0 1 187 1 0 29 0 2 16 1 0 16 6 16 25 1 11 59 4 6 34 chain 14379 chr7 159138663 + 54701931 54702087 L1PA3long 6157 + 6001 6157 143270 156 chain 4065 chr7 159138663 + 54728285 54728458 LTR41B 718 - 0 162 206413 25 15 15 31 32 18 11 44 47 15 chain 150475 chr7 159138663 + 54734724 54736461 SVA_D 2077 - 7 2077 24540 331 0 10 200 37 0 47 0 98 33 1 0 16 0 78 214 7 9 32 0 86 68 1 0 40 0 1 186 0 77 359 0 14 134 0 6 31 chain 2711 chr7 159138663 + 54735255 54735292 SVA_D 2077 - 773 900 123551 25 0 90 12 chain 77954 chr7 159138663 + 54742893 54743824 LTR5_Hs 974 - 0 972 44545 104 2 0 36 16 14 534 0 1 171 0 41 23 0 3 45 chain 9788 chr7 159138663 + 54745732 54745858 Tigger1 2417 + 2220 2345 161665 30 1 0 95 chain 44133 chr7 159138663 + 54746649 54747195 MER41A 554 + 8 554 64037 513 0 1 4 1 0 28 chain 7848 chr7 159138663 + 54752419 54752521 L1MA4A 3247 + 3006 3107 172023 33 1 0 68 chain 10400 chr7 159138663 + 54755582 54755733 MER2 342 + 89 246 158691 15 6 7 31 0 5 99 chain 146317 chr7 159138663 + 54774753 54777021 MER4-int 2692 - 0 2013 25114 15 0 1 391 4 0 5 2 0 16 3 0 11 2 1 70 6 5 48 0 2 20 0 1 4 4 3 29 8 22 47 1 0 50 260 5 10 1 0 4 0 1 68 0 1 221 1 3 69 0 1 47 27 23 79 1 0 3 2 0 88 2 0 352 0 3 52 1 2 94 0 1 106 0 3 5 8 0 31 chain 77679 chr7 159138663 + 54803110 54803998 L1P1 4361 - 496 1385 44666 429 0 1 459 chain 102477 chr7 159138663 + 54803999 54805216 L1PA6 6164 + 4948 6161 36139 450 1 0 603 9 2 13 0 7 131 3 0 7 chain 34343 chr7 159138663 + 54808328 54808793 MER4A1 472 + 8 472 77136 180 16 12 11 0 1 188 3 5 67 chain 4379 chr7 159138663 + 54811848 54811900 MER4A1 472 + 420 472 202212 52 chain 23647 chr7 159138663 + 54832352 54832640 AluSp 311 - 4 303 112322 28 1 13 138 1 0 120 chain 66466 chr7 159138663 + 54843268 54844229 MER11C 1089 + 0 1063 49886 63 0 91 93 4 13 57 0 4 65 1 0 33 1 0 114 49 45 112 6 9 38 0 1 95 30 31 56 1 0 143 chain 14204 chr7 159138663 + 54855942 54856100 L1PA2 6032 - 3 165 143867 95 0 4 63 chain 22309 chr7 159138663 + 54859627 54859912 L1PREC2 3366 + 2462 2746 118882 254 5 4 26 chain 2764 chr7 159138663 + 54860222 54860257 SVA_F 1814 - 1401 1435 229283 18 1 0 16 chain 40421 chr7 159138663 + 54882496 54883135 L1PB1 5432 - 10 620 68702 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 6 2 0 17 7 0 9 2 0 5 1 0 14 1 0 43 3 2 15 2 1 52 2 0 9 22 17 4 1 0 18 19 17 87 0 2 202 chain 209743 chr7 159138663 + 54883577 54886933 L1PBa 3878 - 85 2979 18506 16 2 0 5 30 24 10 6 4 20 1 0 494 3 0 169 16 17 242 0 14 59 647 173 82 1 0 4 0 1 182 0 1 658 4 8 16 0 5 182 0 1 507 chain 3017 chr7 159138663 + 54907680 54907719 MER5A 189 - 120 158 224671 9 1 0 29 chain 531598 chr7 159138663 + 54917394 54924175 L1PA7 6471 - 3 6468 4009 515 0 1 237 1 0 84 12 10 282 0 14 113 0 1 307 0 1 16 2 3 12 0 1 5 1 0 53 0 4 853 0 5 791 326 0 190 0 1 328 8 0 62 6 0 585 0 1 550 15 12 732 4 3 284 0 2 407 chain 38679 chr7 159138663 + 54947938 54948398 LTR2 463 - 0 463 71176 130 1 0 5 0 1 195 0 3 129 chain 39214 chr7 159138663 + 54989506 54989948 L1PA6 6164 - 3451 3894 70178 383 1 2 58 chain 289401 chr7 159138663 + 54989948 54993334 L1PA6 6164 + 2742 6162 14058 27 0 5 411 2 1 79 0 3 416 3 13 748 1 2 148 0 1 53 10 15 183 0 3 816 0 7 489 chain 59305 chr7 159138663 + 55012625 55013323 L1PA7 6471 + 5759 6457 53221 698 chain 118038 chr7 159138663 + 55015476 55016794 L1PA4 6152 + 4827 6152 31792 737 0 7 581 chain 268533 chr7 159138663 + 55016812 55020048 HERVL-int 5654 - 2382 5654 15259 110 0 2 1465 0 2 216 6 13 286 0 1 176 1 0 352 0 1 519 0 3 51 0 21 54 chain 29386 chr7 159138663 + 55020123 55020551 MLT2A1 477 - 25 477 87142 30 1 0 5 3 29 56 7 0 88 1 2 69 0 4 28 14 15 126 chain 8693 chr7 159138663 + 55030766 55030864 L1PA5 6144 + 6041 6139 167229 98 chain 77634 chr7 159138663 + 55051582 55052680 L1MA3 4352 - 48 1114 44678 16 1 0 6 2 1 21 2 0 23 9 5 107 60 34 596 0 3 250 1 0 4 chain 36337 chr7 159138663 + 55094102 55094559 LTR19A 502 + 1 457 74456 300 1 0 156 chain 4463 chr7 159138663 + 55135249 55135298 L1MB2 1706 - 13 62 201191 49 chain 3219 chr7 159138663 + 55234610 55234779 HAL1-2a_MD 234 - 100 165 220605 17 3 0 5 35 0 13 73 7 23 chain 6893 chr7 159138663 + 55234910 55235126 HAL1-2a_MD 234 - 16 210 178239 16 18 1 32 18 1 22 2 0 8 21 4 17 1 34 12 17 0 16 0 15 16 chain 92408 chr7 159138663 + 55264589 55265909 L1PA13 3608 - 120 1442 38843 19 28 28 45 2 0 5 1 0 57 1 0 61 2 0 107 12 11 23 1 0 102 14 13 24 0 1 64 5 6 190 6 9 45 0 8 154 2 1 180 1 0 36 0 1 53 1 0 79 chain 167794 chr7 159138663 + 55286765 55288862 SVA_F 1814 - 0 1805 22305 627 1 0 10 1 0 166 1 0 10 1 0 39 0 15 32 302 0 34 1 0 872 chain 9260 chr7 159138663 + 55287653 55287753 SVA_F 1814 - 708 808 135967 100 chain 7207 chr7 159138663 + 55287788 55287955 SVA_F 1814 - 540 659 133597 118 48 0 1 chain 322826 chr7 159138663 + 55294037 55298975 L1PA11 4918 - 351 4918 12493 13 1 0 15 53 40 11 2 1 13 2 0 11 25 0 47 4 2 20 7 6 56 4 0 9 8 10 19 1 3 99 0 8 8 27 5 194 0 1 109 2 3 591 6 5 347 0 1 377 7 8 143 0 12 154 336 12 11 0 1 4 4 3 153 23 21 207 0 1 113 1 0 4 0 1 123 19 21 20 0 2 55 0 4 61 1 0 31 1 2 16 1 2 122 7 9 315 45 47 15 2 0 138 0 2 105 0 3 213 6 1 118 26 26 25 2 1 7 2 0 33 1 0 50 2 0 49 3 0 37 2 0 28 4 2 12 chain 28417 chr7 159138663 + 55318558 55318858 AluYa5 310 - 10 310 91513 300 chain 34900 chr7 159138663 + 55335010 55335452 MER4A1 472 + 0 466 76340 15 0 2 4 0 1 8 1 0 46 1 0 4 0 1 151 0 21 208 0 1 4 chain 135092 chr7 159138663 + 55349142 55351095 MER57-int 2662 - 2 1903 26995 35 3 0 32 20 15 16 0 5 7 10 1 5 2 0 27 33 20 61 8 3 10 1 0 51 1 5 33 8 15 35 0 1 18 0 2 354 5 6 4 0 1 41 4 6 9 17 0 140 0 1 34 0 1 267 9 6 13 0 19 486 37 0 6 0 1 55 2 0 54 chain 34349 chr7 159138663 + 55353073 55353501 MER57A1 433 - 0 433 77128 11 0 3 85 0 1 89 0 1 243 chain 24136 chr7 159138663 + 55355772 55356139 MER57B1 401 + 2 395 109550 83 25 33 71 5 20 54 0 1 26 8 10 95 chain 324879 chr7 159138663 + 55358944 55362952 L1P3 4156 - 17 4043 12396 24 2 1 7 2 0 557 0 4 46 1 0 85 0 6 162 3 7 75 18 9 173 0 1 92 0 4 180 6 4 4 1 0 7 0 1 54 1 2 595 0 1 93 0 1 708 0 4 74 0 8 748 1 2 80 1 0 59 55 54 94 chain 4367 chr7 159138663 + 55363046 55363099 MER51C 639 + 1 54 202372 53 chain 3664 chr7 159138663 + 55369376 55369516 MER4D 903 - 9 147 212501 25 1 0 7 79 78 28 chain 89007 chr7 159138663 + 55378897 55379920 SVA_D 2077 + 17 1135 40002 204 0 6 497 0 3 35 4 1 69 1 2 82 1 87 34 0 1 92 0 1 4 chain 246073 chr7 159138663 + 55384239 55387069 L1PA6 6164 - 12 2852 16443 140 13 9 94 0 1 278 0 1 248 6 8 50 0 10 194 0 1 461 1 0 299 0 1 542 4 2 421 0 1 79 chain 84386 chr7 159138663 + 55388622 55389681 L1PA11 4918 + 3425 4475 41759 237 1 0 34 3 0 429 25 26 180 10 5 57 2 1 81 chain 56063 chr7 159138663 + 55417126 55417882 MER4E 760 + 0 760 55082 23 1 2 145 1 0 12 1 0 151 6 6 16 1 0 4 0 1 9 15 17 46 1 0 99 6 10 219 chain 10640 chr7 159138663 + 55418849 55418988 MER41B 635 + 480 620 157658 100 1 2 38 chain 50107 chr7 159138663 + 55420300 55421821 MER4E 760 - 5 760 58939 141 1 0 58 894 124 331 0 4 73 0 1 23 chain 8170 chr7 159138663 + 55451586 55451689 LTR8 732 - 619 720 170117 86 2 0 15 chain 163308 chr7 159138663 + 55469238 55471168 SVA_D 2077 - 0 2066 22906 99 0 4 126 1 0 393 1 0 8 37 10 4 1 0 101 1 0 253 0 51 25 0 1 55 11 0 30 3 1 20 0 40 91 0 40 75 0 40 284 8 4 280 0 5 7 0 3 16 chain 2586 chr7 159138663 + 55469866 55469903 SVA_D 2077 - 905 942 117682 37 chain 3144 chr7 159138663 + 55488309 55488391 MER58B 340 - 30 116 222086 24 36 40 22 chain 234999 chr7 159138663 + 55521895 55524645 L1PA7 6471 + 3711 6463 17029 775 9 1 177 1 2 152 0 4 50 0 2 75 1 0 665 0 3 81 0 2 437 1 0 326 chain 19802 chr7 159138663 + 55528626 55529066 L1PB1 5432 + 5053 5420 127809 53 1 0 7 41 1 24 1 0 8 1 0 10 9 5 6 2 0 11 1 0 41 3 2 15 1 0 24 0 1 19 1 0 16 3 0 6 16 6 19 3 1 4 1 0 14 2 0 13 0 8 7 9 0 17 1 0 13 1 0 16 chain 24480 chr7 159138663 + 55530348 55530610 AluYa5 310 - 11 272 107659 173 1 0 88 chain 9267 chr7 159138663 + 55530725 55530867 L1MA4A 3247 - 2751 2888 164235 7 7 0 49 8 10 71 chain 52480 chr7 159138663 + 55577695 55578368 PABL_A 660 - 0 660 57312 205 0 1 150 3 2 25 1 2 185 19 5 85 chain 17090 chr7 159138663 + 55591113 55591492 MER65C 458 + 0 437 135351 49 0 2 10 0 2 5 1 0 4 1 2 12 0 24 36 54 83 37 1 0 13 3 0 29 1 0 59 40 46 24 chain 8100 chr7 159138663 + 55644283 55644392 MER4D1 891 - 781 891 170486 81 3 4 25 chain 524837 chr7 159138663 + 55644897 55651006 L1PA5 6144 - 14 6142 4699 228 0 7 1288 0 2 214 0 2 93 0 2 342 0 2 469 0 1 52 1 0 409 5 6 35 0 1 637 24 7 922 0 5 237 14 5 161 0 1 39 0 1 776 30 51 133 chain 7464 chr7 159138663 + 55691630 55691737 MER4A1 472 - 12 121 174382 52 6 8 49 chain 117204 chr7 159138663 + 55692255 55694494 MER4-int 2692 - 940 2611 32055 284 6 7 27 3 2 18 1 20 198 7 10 8 0 1 73 1 0 42 0 2 13 0 2 138 1 0 181 5 3 53 0 3 10 14 17 50 631 18 24 0 9 383 0 5 23 0 1 8 12 14 6 1 0 18 chain 23048 chr7 159138663 + 55702070 55702387 L1PA7 6471 + 6179 6469 115404 245 27 0 45 chain 102570 chr7 159138663 + 55719569 55723519 L1PA10 4194 + 324 2188 36116 11 2 0 18 1 0 10 1 0 13 2 0 5 0 3 11 36 28 59 5 2 155 7 6 154 9 4 55 4 0 6 9 13 274 1 0 94 0 1 25 2428 370 126 35 21 44 0 4 291 0 2 59 chain 3056 chr7 159138663 + 55755733 55755770 L1MC4 1079 + 722 759 223879 37 chain 23807 chr7 159138663 + 55793232 55793508 AluSp 311 - 24 302 111435 155 2 0 60 0 4 59 chain 29070 chr7 159138663 + 55801752 55802122 THE1C 375 + 0 375 88681 135 0 4 41 0 1 194 chain 29603 chr7 159138663 + 55839970 55840286 AluYb9 318 + 0 316 86204 316 chain 18535 chr7 159138663 + 55867784 55868035 L1MA3 4352 + 3791 4044 131409 46 0 1 16 0 3 5 8 6 176 chain 4597 chr7 159138663 + 55876184 55876238 L1PA15 4387 + 4049 4103 199668 54 chain 13822 chr7 159138663 + 55923800 55924085 L1PA16 3655 - 36 281 145173 15 6 0 5 6 0 8 11 1 13 3 0 20 32 12 16 0 1 101 7 11 42 chain 22217 chr7 159138663 + 55924787 55925055 AluSp 311 + 4 273 119275 264 0 1 4 chain 11958 chr7 159138663 + 55926721 55926859 AluSq2 311 + 161 299 152370 138 chain 28533 chr7 159138663 + 55933989 55934297 AluYa5 310 + 0 305 91036 97 3 0 208 chain 75086 chr7 159138663 + 55936574 55937423 LTR12C 1709 + 810 1709 45975 27 1 0 234 0 47 106 0 4 73 1 0 39 0 1 368 chain 38417 chr7 159138663 + 55938212 55938841 L1PA11 4918 + 3942 4566 71554 180 17 18 44 0 5 142 6 5 56 10 17 63 2 0 13 4 3 20 4 0 9 8 3 10 13 9 14 2 1 12 chain 25775 chr7 159138663 + 55941477 55941800 LTR14A 344 - 0 329 100994 177 0 4 51 1 3 94 chain 26514 chr7 159138663 + 55968777 55969142 THE1B 368 - 0 368 97995 167 11 1 25 7 6 110 0 15 20 1 0 24 chain 5252 chr7 159138663 + 55973844 55973908 LTR23 429 + 321 385 192495 64 chain 23111 chr7 159138663 + 55976619 55976913 AluSc5 308 + 0 303 115091 46 7 18 59 1 0 3 1 0 67 1 0 64 1 0 20 0 2 24 chain 41752 chr7 159138663 + 55976944 55977563 L1PB4 2604 - 1073 1656 66956 11 1 0 7 0 1 33 0 1 55 16 12 405 32 6 7 9 0 18 3 5 22 chain 5403 chr7 159138663 + 55987865 55987922 Tigger1 2417 + 1810 1867 190967 57 chain 2770 chr7 159138663 + 55998165 55998197 MER58A 224 + 47 79 229196 32 chain 5152 chr7 159138663 + 55998520 55998580 MER58B 340 + 265 325 193533 60 chain 29184 chr7 159138663 + 56000296 56000606 AluYb8 318 + 1 311 88126 310 chain 83765 chr7 159138663 + 56010584 56011596 LTR5A 1029 - 0 1029 42002 220 8 11 17 0 10 80 0 2 203 1 2 298 0 2 37 1 0 147 chain 8262 chr7 159138663 + 56011622 56011717 MSTB 430 - 306 401 169612 95 chain 23262 chr7 159138663 + 56018218 56018497 AluY 311 + 10 288 114370 108 3 0 14 0 1 8 0 1 146 chain 11717 chr7 159138663 + 56026360 56026510 L1PA7 6471 + 6140 6297 153390 38 0 3 45 7 11 60 chain 47989 chr7 159138663 + 56027473 56028061 L1PA8 5853 + 5255 5847 60496 309 1 0 44 2 0 13 0 2 59 1 0 5 1 9 43 3 2 19 1 0 87 chain 6212 chr7 159138663 + 56029295 56029367 LTR71A 459 - 0 72 183483 72 chain 25466 chr7 159138663 + 56091613 56091907 AluYc3 301 - 6 301 102373 180 1 2 113 chain 3683 chr7 159138663 + 56092088 56092156 MER58B 340 + 96 164 212188 4 1 0 36 10 11 17 chain 11089 chr7 159138663 + 56098134 56098267 L1PA16 3655 + 3403 3536 155852 133 chain 20183 chr7 159138663 + 56112542 56112784 AluSp 311 + 58 301 126583 62 0 1 180 chain 5991 chr7 159138663 + 56116943 56117027 L1PA8 5853 - 115 198 185320 39 1 2 9 1 0 6 1 0 27 chain 8189 chr7 159138663 + 56175683 56175889 L1PB1 5432 + 5237 5422 170013 42 41 30 17 26 20 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 8706 chr7 159138663 + 56204064 56204167 LTR39 781 - 636 740 167161 60 0 1 43 chain 35596 chr7 159138663 + 56212585 56213070 MER9a2 513 + 0 505 75419 316 20 78 54 38 0 57 chain 307869 chr7 159138663 + 56214404 56220631 HERVK9-int 4720 + 54 4720 13093 4 1 0 9 0 1 56 1 0 5 4 3 30 1 0 1332 0 923 5 1 2 41 1 0 4 0 1 342 0 10 537 0 2 19 2 1 219 0 14 266 0 1 42 0 1 410 2509 0 386 chain 149343 chr7 159138663 + 56217749 56220240 SVA_D 2077 + 332 2077 24709 430 40 0 154 2 1 19 8 1 10 10 0 66 461 0 21 1 4 181 48 0 169 0 1 4 17 14 74 177 0 280 1 0 308 2 0 8 chain 2600 chr7 159138663 + 56218488 56218540 SVA_D 2077 + 1130 1182 79764 52 chain 2159 chr7 159138663 + 56218540 56218566 SVA_D 2077 + 1309 1335 144456 26 chain 3825 chr7 159138663 + 56218671 56218716 SVA_D 2077 + 1265 1310 104424 45 chain 18766 chr7 159138663 + 56218716 56218949 SVA_D 2077 + 956 1191 61331 78 1 4 6 1 0 147 chain 3866 chr7 159138663 + 56219152 56219200 SVA_D 2077 + 1346 1444 61331 15 0 49 28 0 1 5 chain 3433 chr7 159138663 + 56219464 56219591 SVA_D 2077 + 1129 1256 76417 127 chain 4434 chr7 159138663 + 56219591 56219641 SVA_D 2077 + 1080 1129 146099 13 1 0 36 chain 43631 chr7 159138663 + 56220631 56221144 MER9a2 513 + 0 513 64651 19 3 2 215 0 1 276 chain 23544 chr7 159138663 + 56222768 56223074 AluY 311 + 4 301 112882 122 9 0 175 chain 28392 chr7 159138663 + 56257474 56258011 MER1A 529 - 5 529 91609 52 18 16 239 19 21 73 120 107 16 chain 53351 chr7 159138663 + 56263398 56264818 MER4E1 777 + 29 767 56805 163 0 1 79 0 3 47 642 0 215 68 8 116 19 34 18 0 1 53 chain 141157 chr7 159138663 + 56267696 56269277 L1PA4 6152 - 9 1592 25962 331 1 0 309 1 0 201 0 4 738 chain 14624 chr7 159138663 + 56281729 56282056 L1PB1 5432 - 63 349 142510 23 2 0 9 6 5 5 2 0 19 14 5 7 4 0 15 1 0 44 1 0 16 2 1 53 2 0 8 19 21 23 3 0 12 18 1 19 chain 33160 chr7 159138663 + 56285353 56285774 MER41A 554 + 0 424 78968 184 2 1 119 0 4 116 chain 51269 chr7 159138663 + 56298510 56299095 L1PA7 6471 - 19 603 58144 230 0 1 302 2 0 51 chain 29395 chr7 159138663 + 56314088 56314396 AluYb8 318 - 10 318 87098 308 chain 28213 chr7 159138663 + 56325566 56326023 MER4A1 472 - 10 472 92262 13 2 3 40 9 10 14 0 1 106 64 65 189 0 1 20 chain 91621 chr7 159138663 + 56331838 56332900 MER11C 1089 + 0 1073 39084 251 0 1 65 0 4 367 0 4 45 0 1 151 0 1 183 chain 22292 chr7 159138663 + 56360198 56360475 AluSq2 311 + 11 285 118943 207 4 1 66 chain 16109 chr7 159138663 + 56374426 56374625 MER107 203 - 0 202 138029 34 1 4 164 chain 543399 chr7 159138663 + 56376248 56382373 L1PA4 6152 - 1 6151 2280 155 1 0 2025 0 7 25 0 1 1395 0 1 151 0 4 856 1 2 793 1 2 357 15 26 350 chain 19155 chr7 159138663 + 56382398 56382664 L1PA8 5853 - 0 260 129664 93 1 0 19 2 1 52 17 15 65 2 0 15 chain 40379 chr7 159138663 + 56384641 56385122 MER9a2 513 + 12 497 68766 144 2 3 79 0 1 215 0 2 41 chain 339968 chr7 159138663 + 56385914 56389961 HERVK9-int 4720 + 36 4720 11897 13 13 9 66 1 0 8 1 0 25 6 5 1185 0 3 11 0 1 223 0 2 463 1 0 601 9 649 9 2 0 330 1 0 595 6 9 90 1 0 387 chain 44245 chr7 159138663 + 56389961 56390474 MER9a2 513 + 0 513 63889 513 chain 21132 chr7 159138663 + 56401368 56401629 AluSp 311 + 10 291 123437 81 0 4 122 5 21 53 chain 41941 chr7 159138663 + 56468666 56469142 L1PA4 6152 + 5664 6140 66698 344 0 1 83 1 0 48 chain 21053 chr7 159138663 + 56487890 56488196 AluY 311 + 4 311 123717 113 0 1 14 0 1 4 9 6 7 0 3 42 20 19 97 chain 24533 chr7 159138663 + 56505761 56506068 AluYk4 311 + 0 305 107359 253 8 7 16 5 4 25 chain 169237 chr7 159138663 + 56519587 56521546 L1PA6 6164 - 11 1969 22150 824 12 11 487 0 5 8 6 1 622 chain 6833 chr7 159138663 + 56541793 56542106 LTR42 492 + 130 447 178705 42 196 199 17 7 8 51 chain 25566 chr7 159138663 + 56568237 56568525 AluYc3 301 - 13 301 101896 288 chain 530292 chr7 159138663 + 56574113 56580251 L1PA4 6152 - 0 6151 4152 333 0 1 524 1 0 696 0 1 648 1 0 8 0 1 320 21 9 95 0 1 101 7 8 109 0 19 457 0 1 242 1 2 28 0 1 2546 chain 29557 chr7 159138663 + 56593864 56594171 AluYb8 318 + 0 307 86388 307 chain 3163 chr7 159138663 + 56599614 56599680 L1PB1 5432 - 18 86 221692 10 1 0 5 11 15 14 1 0 24 chain 22769 chr7 159138663 + 56635789 56636052 AluYk4 311 + 32 295 116731 263 chain 558638 chr7 159138663 + 56652489 56658517 L1PA2 6032 + 1 6031 437 832 0 4 532 1 0 1718 1 0 2944 chain 86474 chr7 159138663 + 56666641 56667682 MER11C 1089 - 16 1089 40979 144 7 9 342 14 33 76 0 1 243 1 10 165 0 1 49 chain 50633 chr7 159138663 + 56674242 56674868 HERVL-int 5654 - 3625 4252 58554 26 0 1 600 chain 44151 chr7 159138663 + 56687102 56687584 L1PA2 6032 - 2 484 64007 482 chain 21623 chr7 159138663 + 56715349 56715589 SVA_B 1603 - 1 241 121688 240 chain 122713 chr7 159138663 + 56719371 56720990 L1PA8 5853 - 0 1674 30156 92 2 1 17 10 9 39 17 17 17 1 0 53 2 0 46 1 0 14 14 22 149 0 3 15 0 15 137 11 14 109 1 3 72 1 0 186 0 15 42 0 7 34 0 7 64 0 2 155 1 0 120 4 6 31 1 0 161 chain 4541 chr7 159138663 + 56740954 56741005 MADE1 96 + 45 96 200321 51 chain 25167 chr7 159138663 + 56746676 56746971 AluSp 311 - 5 300 103921 295 chain 24534 chr7 159138663 + 56781644 56781926 AluY 311 + 22 304 107343 101 1 0 9 0 1 171 chain 4393 chr7 159138663 + 56812145 56812233 MADE1 96 - 0 96 202031 37 29 37 22 chain 7895 chr7 159138663 + 56815781 56815884 MER41C 542 - 440 542 171686 52 3 2 48 chain 20688 chr7 159138663 + 56824510 56824780 AluSp 311 + 21 296 125009 18 9 14 243 chain 6347 chr7 159138663 + 56834858 56834934 L1MA3 4352 + 3495 3571 182403 76 chain 40935 chr7 159138663 + 56858775 56859930 LTR71B 605 - 0 603 67990 46 6 10 49 4 5 152 569 0 187 18 30 124 chain 549354 chr7 159138663 + 56906107 56912218 L1PA3long 6157 - 0 6151 1533 5 2 0 774 1 0 68 1 5 13 0 4 227 6 5 602 0 1 91 0 2 746 0 2 89 0 2 218 0 19 953 0 1 4 1 0 116 0 4 1056 0 6 1138 chain 29674 chr7 159138663 + 56996151 56996490 LTR14A 344 + 0 344 85926 37 0 5 302 chain 14390 chr7 159138663 + 57002227 57002414 Tigger1 2417 + 1291 1479 143235 53 5 6 129 chain 17189 chr7 159138663 + 57043641 57043879 L1MC 810 - 233 460 135062 220 11 0 7 chain 22535 chr7 159138663 + 57049316 57049659 AluSp 311 + 8 297 117868 74 0 9 123 63 0 83 chain 540730 chr7 159138663 + 57104238 57110255 L1PA3long 6157 + 1 6157 2702 7 3 0 145 0 1 553 0 1 68 0 128 876 1 0 1479 0 4 633 0 2 462 0 4 1282 0 1 9 0 1 495 0 1 4 chain 23443 chr7 159138663 + 57115268 57115553 AluSq10 312 + 9 293 113414 116 1 0 168 chain 9661 chr7 159138663 + 57116234 57116352 L1PA5 6144 - 6 124 162296 118 chain 90273 chr7 159138663 + 57136021 57137080 L1PA6 6164 + 5093 6162 39546 16 0 2 207 0 4 166 0 2 202 1 4 294 0 1 5 1 0 148 1 0 18 chain 3231 chr7 159138663 + 57149298 57149425 Tigger4a 237 + 7 134 220412 33 76 76 18 chain 123574 chr7 159138663 + 57155926 57158861 L1PA4 6152 - 0 1431 29848 113 0 1 34 1 8 830 1512 0 445 chain 26678 chr7 159138663 + 57160451 57160756 AluYf4 310 - 4 310 97398 93 0 1 212 chain 4094 chr7 159138663 + 57175615 57175662 MADE1 96 + 45 92 206019 47 chain 7414 chr7 159138663 + 57243822 57243914 LTR43 600 + 458 552 174685 26 0 2 66 chain 6134 chr7 159138663 + 57253979 57254051 tRNA-Gln-CAA_ 72 - 0 72 184144 72 chain 38712 chr7 159138663 + 57303109 57303725 LTR9B 643 - 0 638 71134 124 0 7 52 49 47 69 2 1 67 6 10 33 12 13 12 5 8 89 3 11 27 4 6 62 chain 189555 chr7 159138663 + 57320912 57322990 L1PA4 6152 + 4075 6152 20095 892 1 0 1185 chain 3917 chr7 159138663 + 57347446 57347489 MADE1 96 + 52 95 208588 43 chain 43397 chr7 159138663 + 57349433 57349976 MER41A 554 + 0 554 64940 142 0 9 167 0 1 111 9 10 114 chain 5026 chr7 159138663 + 57383371 57383425 MIRc 230 - 106 160 194866 54 chain 22260 chr7 159138663 + 57391550 57391837 MER41A 554 - 166 461 119077 135 0 1 62 9 10 41 0 6 40 chain 4680 chr7 159138663 + 57407481 57407558 MIR 256 + 24 106 198752 36 12 17 29 chain 29525 chr7 159138663 + 57424793 57425109 AluYb8 318 + 0 316 86546 316 chain 43708 chr7 159138663 + 57436042 57436531 LTR2C 499 + 9 499 64557 431 0 1 58 chain 4368 chr7 159138663 + 57464491 57464541 MER4A 717 - 243 293 202339 50 chain 3372 chr7 159138663 + 57491943 57491993 L1M3a 1038 - 214 265 217635 18 1 2 31 chain 17061 chr7 159138663 + 57503302 57503520 L1P3 4156 - 168 386 135427 218 chain 2907 chr7 159138663 + 57514902 57514934 MER92B 628 - 227 259 226932 32 chain 19779 chr7 159138663 + 57525428 57525651 L1PA3long 6157 + 5686 5909 127876 223 chain 21678 chr7 159138663 + 57525662 57525900 L1PA3long 6157 + 5918 6156 121475 238 chain 29991 chr7 159138663 + 57568838 57569155 AluYb8 318 + 1 318 84834 317 chain 8660 chr7 159138663 + 57585553 57585651 L1PA4 6152 + 5798 5896 167423 98 chain 141268 chr7 159138663 + 57597732 57599298 L1PA3long 6157 - 5 1570 25940 45 1 0 1520 chain 104868 chr7 159138663 + 57599298 57600540 L1HS 6032 + 9 1260 35496 24 5 4 215 5 4 8 1 0 63 0 3 188 0 1 227 0 8 506 chain 16400 chr7 159138663 + 57725029 57725335 Tigger1 2417 + 1123 1773 137210 38 4 1 46 68 415 150 chain 157776 chr7 159138663 + 57734226 57736601 L1PA8 5853 + 3757 5848 23623 121 0 1 96 0 14 117 0 2 107 11 9 116 1 0 147 1 2 227 0 13 50 7 9 221 0 2 51 307 0 411 0 1 90 1 0 44 2 0 71 1 0 14 7 6 43 1 0 18 1 0 72 4 1 15 chain 14064 chr7 159138663 + 57773622 57773805 MER47A 366 + 133 316 144342 183 chain 190762 chr7 159138663 + 57780454 57782654 L1PA5 6144 - 29 2225 19974 126 1 0 695 6 0 144 9 7 703 0 1 94 0 4 422 chain 29284 chr7 159138663 + 57786445 57786749 AluYb8 318 - 14 318 87643 304 chain 9794 chr7 159138663 + 57801457 57801597 MER4E 760 - 0 328 161625 90 3 0 36 0 191 11 chain 7247 chr7 159138663 + 57846690 57846779 L1MB8 1703 + 1468 1557 175786 89 chain 27692 chr7 159138663 + 57875713 57876083 THE1A 353 - 0 353 94070 62 17 1 180 1 0 110 chain 5682 chr7 159138663 + 57886983 57887045 L1PA3long 6157 + 6088 6150 188286 62 chain 2649 chr7 159138663 + 57917953 57918052 MER77B 728 + 471 575 231025 14 57 62 28 chain 18651 chr7 159138663 + 57986354 57986587 L1PA3long 6157 - 1 232 131087 154 6 5 42 1 0 30 chain 262787 chr7 159138663 + 58001854 58004767 L1PA2 6032 - 1396 4317 15545 98 0 1 1254 0 3 619 0 4 942 chain 121898 chr7 159138663 + 58004767 58006110 L1PA2 6032 + 4668 6017 30325 178 0 7 345 1 0 819 chain 372654 chr7 159138663 + 58022007 58026331 L1PA3long 6157 - 0 4338 11006 447 1 2 330 1 0 433 1 0 366 0 1 633 1 2 759 0 1 432 9 20 412 2 0 59 0 2 108 0 1 330 chain 147822 chr7 159138663 + 61085931 61087558 L1PA2 6032 - 1 1627 24900 765 1 0 861 chain 17522 chr7 159138663 + 61087561 61087753 L1PA2 6032 + 4188 4380 134200 192 chain 113155 chr7 159138663 + 61248355 61249617 L1PA2 6032 - 1208 2471 33333 311 1 2 565 0 1 70 1 0 314 chain 106638 chr7 159138663 + 61249618 61250817 L1PA2 6032 + 4819 6018 35084 1199 chain 319848 chr7 159138663 + 61290686 61294120 L1HS 6032 - 2 3436 12604 3434 chain 271940 chr7 159138663 + 61304139 61307404 L1PA4 6152 + 2876 6147 15086 283 0 1 5 0 1 42 0 1 473 1 0 291 0 1 1095 9 0 17 0 10 204 0 1 686 1 3 5 1 0 152 chain 3092 chr7 159138663 + 61361249 61361360 L1MB3 1562 - 10 120 223063 7 0 1 21 58 56 25 chain 139750 chr7 159138663 + 61362165 61363791 L1PA3long 6157 - 0 1628 26178 671 0 1 594 0 1 361 chain 34282 chr7 159138663 + 61363791 61364202 L1PA3long 6157 + 4109 4536 76861 210 2 1 98 0 17 101 chain 112773 chr7 159138663 + 61375111 61376366 L1PA2 6032 - 1208 2471 33453 819 0 7 52 0 1 384 chain 106474 chr7 159138663 + 61376367 61377565 L1PA2 6032 + 4819 6018 35127 436 0 1 762 chain 318778 chr7 159138663 + 61417419 61420850 L1HS 6032 - 4 3436 12640 337 0 1 3094 chain 270807 chr7 159138663 + 61430697 61433960 L1PA4 6152 + 2876 6147 15147 283 0 1 5 0 1 42 0 1 473 1 0 291 0 1 324 0 2 769 9 0 17 0 10 204 0 1 686 1 3 5 1 0 152 chain 31487 chr7 159138663 + 61452042 61452445 L1PA4 6152 - 1 427 81664 5 1 0 147 0 24 250 chain 19767 chr7 159138663 + 61459777 61459995 L1PA2 6032 + 5810 6032 127915 60 0 4 158 chain 278741 chr7 159138663 + 61525379 61528675 L1PA4 6152 - 0 3291 14707 6 4 0 143 0 1 109 1 0 135 0 3 7 12 9 1080 1 0 1798 chain 126243 chr7 159138663 + 61533334 61534849 L1P1 4361 - 20 1531 29019 12 2 1 23 1 0 146 2 1 7 1 0 1321 chain 19645 chr7 159138663 + 61560822 61561040 L1PA2 6032 - 0 222 128266 158 0 4 60 chain 20370 chr7 159138663 + 61568373 61568623 L1PA4 6152 + 5725 5975 125996 250 chain 11651 chr7 159138663 + 61568623 61568770 L1PA4 6152 + 5999 6146 153693 147 chain 271169 chr7 159138663 + 61586861 61590126 L1PA4 6152 - 5 3276 15132 136 23 24 686 0 1 204 0 10 13 9 0 1100 0 1 290 1 0 479 0 1 36 0 1 5 0 1 283 chain 319591 chr7 159138663 + 61600145 61603578 L1HS 6032 + 2596 6029 12612 3433 chain 5831 chr7 159138663 + 61636422 61636489 L1PA3long 6157 + 6090 6157 186862 67 chain 106476 chr7 159138663 + 61643446 61644644 L1PA2 6032 - 14 1213 35125 767 0 1 431 chain 5266 chr7 159138663 + 61644645 61645823 L1PA2 6032 + 3561 4747 31389 387 0 1 52 0 7 739 chain 34403 chr7 159138663 + 61656808 61657219 L1PA3long 6157 - 1621 2048 76685 101 0 17 98 2 1 210 chain 140749 chr7 159138663 + 61657219 61658845 L1PA3long 6157 + 4529 6157 26032 361 0 1 594 0 1 671 chain 3092 chr7 159138663 + 61659650 61659761 L1MB3 1562 + 1442 1552 223062 25 58 56 21 0 1 7 chain 55909 chr7 159138663 + 61669998 61670618 L1PA2 6032 - 3 623 55178 620 chain 2937 chr7 159138663 + 61670618 61671275 L1PA2 6032 + 4747 5404 31389 657 chain 59204 chr7 159138663 + 61765787 61766444 L1PA2 6032 - 628 1285 53283 657 chain 52626 chr7 159138663 + 61766444 61767061 L1PA2 6032 + 5409 6028 57222 463 6 7 130 0 1 18 chain 35078 chr7 159138663 + 61773342 61773726 L1PA2 6032 - 2 387 76080 173 0 1 211 chain 18781 chr7 159138663 + 61779065 61779299 L1PA4 6152 - 1 233 130732 5 2 0 227 chain 41744 chr7 159138663 + 61826418 61826865 L1HS 6032 + 5585 6032 66969 447 chain 417260 chr7 159138663 + 61826918 61831826 L1PA4 6152 + 1226 6151 9597 227 0 4 488 0 12 2394 8 12 666 1 0 1117 2 0 5 chain 20764 chr7 159138663 + 61858393 61858670 L1PA5 6144 + 5851 6129 124733 187 16 17 74 chain 12890 chr7 159138663 + 61887131 61887278 L1PA4 6152 + 6004 6151 148667 147 chain 330254 chr7 159138663 + 61898252 61902322 L1P1 4361 + 241 4328 12194 468 0 4 157 0 1 103 0 1 59 0 1 81 0 1 120 11 12 1439 1 6 8 5 0 451 0 1 95 0 8 624 0 1 269 1 0 154 1 0 23 chain 187673 chr7 159138663 + 62010012 62012204 L1HS 6032 - 2238 4462 20247 713 1 0 25 0 2 11 1 0 67 0 6 677 0 26 483 0 1 189 1 0 24 chain 189569 chr7 159138663 + 62012204 62014403 L1PA3long 6157 + 3928 6143 20093 36 0 4 392 0 4 732 0 2 209 0 6 830 chain 123206 chr7 159138663 + 62047972 62049315 L1PA2 6032 + 4684 6027 29976 1343 chain 122187 chr7 159138663 + 62054349 62055848 L1PA4 6152 - 6 1506 30313 1258 0 1 241 chain 134059 chr7 159138663 + 62059486 62061081 SVA_D 2077 - 3 2077 27189 532 0 352 99 1 2 29 6 58 17 0 1 23 8 45 230 4 43 623 3 0 20 chain 94461 chr7 159138663 + 62062843 62063912 L1PA3long 6157 - 13 1084 38195 135 3 4 186 0 1 745 chain 245791 chr7 159138663 + 62063912 62066698 L1PA3long 6157 + 2263 5053 16466 433 0 1 559 5 7 683 0 1 1106 chain 94355 chr7 159138663 + 62067882 62068904 L1PA2 6032 - 1 1023 38246 1022 chain 20332 chr7 159138663 + 62077078 62077303 L1PA2 6032 - 268 493 126130 225 chain 23496 chr7 159138663 + 62077312 62077577 L1PA2 6032 + 5767 6032 113144 265 chain 83737 chr7 159138663 + 62079589 62080589 LTR5A 1029 + 0 1029 42022 134 0 13 670 0 1 28 0 15 168 chain 12868 chr7 159138663 + 62099504 62099645 L1PA4 6152 - 9 150 148762 141 chain 305454 chr7 159138663 + 62099669 62103307 L1PA4 6152 + 2255 5940 13191 916 3 1 37 1 2 45 0 3 346 0 1 83 1 0 488 0 1 127 1 0 514 0 44 861 0 1 215 chain 503051 chr7 159138663 + 62127245 62133384 L1PA4 6152 + 7 6150 6665 500 12 12 512 4 3 60 0 1 271 0 1 166 0 1 785 0 1 876 0 1 489 0 3 520 5 1 112 0 1 163 0 1 273 0 1 335 0 1 29 1 0 4 0 1 168 1 2 491 6 0 25 0 1 315 0 1 16 chain 91289 chr7 159138663 + 62156068 62157178 L1PA4 6152 - 0 1096 39200 260 1 0 710 18 5 121 chain 6500 chr7 159138663 + 62157179 62157260 L1PA4 6152 + 4494 4575 181234 81 chain 42085 chr7 159138663 + 62157260 62157745 L1PA4 6152 + 4576 5061 66512 485 chain 10766 chr7 159138663 + 62180600 62180727 L1PA4 6152 + 6023 6150 157123 127 chain 84699 chr7 159138663 + 62181400 62182372 L1PA3long 6157 + 5185 6157 41638 811 2 1 82 0 1 77 chain 58719 chr7 159138663 + 62188977 62189619 L1PA2 6032 - 5 646 53571 161 1 0 480 chain 490577 chr7 159138663 + 62197177 62203289 L1PA5 6144 - 1 6141 7338 169 5 6 636 3 14 293 0 3 266 1 0 4 0 1 551 4 8 516 0 1 409 0 1 7 4 5 95 2 1 839 5 6 7 0 1 871 1 0 283 0 3 138 1 2 225 0 1 4 1 0 488 24 24 59 86 87 52 1 2 62 chain 69343 chr7 159138663 + 62260528 62261304 L1PA3long 6157 + 5381 6156 48662 771 1 0 4 chain 539190 chr7 159138663 + 62319285 62325304 L1PA2 6032 + 0 6017 2951 257 1 0 3021 0 1 288 1 0 1605 1 0 845 chain 5103 chr7 159138663 + 62359607 62359669 L1PA3long 6157 + 6095 6157 194059 62 chain 406165 chr7 159138663 + 62360879 62365816 L1PA4 6152 + 633 6143 9907 39 5 15 322 1 2 131 0 2 62 2 1 4 0 1 183 9 0 10 1 10 25 1 0 201 0 1 781 0 557 527 0 1 1786 0 1 701 1 3 4 1 0 140 chain 510778 chr7 159138663 + 62369277 62375364 L1PA4 6152 - 22 6152 6087 112 19 20 179 1 2 238 6 7 277 0 1 156 1 0 163 3 0 1293 1 0 254 9 11 164 0 3 79 0 1 192 1 0 356 0 1 306 0 2 892 2 16 167 6 8 354 4 8 242 0 22 28 1 0 116 6 0 363 0 1 96 chain 11773 chr7 159138663 + 62402052 62402192 L1P1 4361 + 4186 4328 153163 49 0 3 67 1 0 23 chain 227866 chr7 159138663 + 62410165 62412925 L1PA6 6164 + 3360 6156 17430 1318 12 13 1011 0 35 170 0 1 4 1 0 140 2 1 73 0 1 29 chain 45170 chr7 159138663 + 62431083 62431573 L1PA2 6032 + 4565 5055 62852 490 chain 89351 chr7 159138663 + 62431574 62432545 L1PA2 6032 + 5055 6027 39860 656 0 1 315 chain 511132 chr7 159138663 + 62453590 62459721 L1PA5 6144 - 4 6141 6057 138 0 6 6 6 0 16 4 5 1341 1 2 91 0 1 444 0 1 720 0 1 4 1 0 30 0 1 1512 1 0 1341 0 1 15 0 1 460 chain 153115 chr7 159138663 + 62479481 62481722 L1MA3 4352 - 0 2134 24216 21 3 0 3 1 0 14 1 0 23 11 9 24 2 0 22 4 0 59 25 7 17 0 18 16 43 58 15 30 6 107 0 1 67 0 1 483 1 0 581 30 9 189 0 1 84 65 0 173 1 0 31 1 0 84 0 1 10 chain 340286 chr7 159138663 + 62521120 62524942 L1HS 6032 + 2 4346 11892 94 0 524 93 7 0 1542 0 2 617 0 1 318 0 1 711 0 1 440 chain 3325 chr7 159138663 + 62530572 62530689 L1MB3 1562 - 7 124 218477 21 65 65 31 chain 3886 chr7 159138663 + 62562100 62562179 MIRb 242 + 81 164 209070 44 23 27 12 chain 73437 chr7 159138663 + 62581417 62582242 L1PA3long 6157 - 1056 1943 46571 310 0 62 515 chain 92555 chr7 159138663 + 62582242 62583285 L1PA3long 6157 + 5103 6156 38798 32 0 1 703 0 1 165 0 4 38 0 3 5 8 5 74 0 4 18 chain 12190 chr7 159138663 + 62588394 62588643 L1PA15 4387 + 4119 4357 151456 11 1 0 51 5 4 16 15 16 50 6 3 16 2 5 22 2 0 14 14 6 24 chain 16623 chr7 159138663 + 62592232 62592471 L1MA3 4352 + 49 282 136604 22 0 4 81 1 0 19 5 0 81 4 0 26 chain 11771 chr7 159138663 + 62604698 62604831 AluYc3 301 + 150 283 153173 133 chain 8294 chr7 159138663 + 62605069 62605172 L1PA3long 6157 + 5896 6000 169439 69 1 2 33 chain 13767 chr7 159138663 + 62605179 62605332 L1PA3long 6157 + 6000 6153 145377 153 chain 566072 chr7 159138663 + 62609209 62615237 L1HS 6032 - 1 6032 146 1936 0 3 4092 chain 228552 chr7 159138663 + 62633052 62635834 L1PA7 6471 - 9 6471 17385 827 14 11 106 0 1 519 0 1 499 0 3679 414 0 2 403 chain 32451 chr7 159138663 + 62660208 62660572 L1PA4 6152 + 5783 6152 80110 358 0 5 6 chain 26575 chr7 159138663 + 62670256 62670590 L1PA7 6471 + 6126 6461 97744 149 5 6 180 chain 88713 chr7 159138663 + 62702333 62703395 L1PA6 6164 + 5093 6162 40102 220 1 2 173 1 3 22 0 2 5 3 1 171 1 4 45 0 2 400 2 1 18 chain 125455 chr7 159138663 + 62721685 62723106 L1PA4 6152 - 0 1431 29258 113 0 1 34 1 8 303 0 2 970 chain 3675 chr7 159138663 + 62740113 62740152 MADE1 96 + 53 92 212307 39 chain 67046 chr7 159138663 + 62781963 62782761 L1PA7 6471 + 5630 6429 49637 67 0 2 41 0 1 567 1 0 7 1 0 114 chain 10645 chr7 159138663 + 62782761 62782880 L1PA7 6471 - 299 418 156894 119 chain 49361 chr7 159138663 + 62785676 62786252 L1PA6 6164 + 5588 6162 59480 568 2 0 6 chain 73260 chr7 159138663 + 62825959 62826864 L1P1 4361 - 2890 3791 46903 34 4 3 734 16 13 117 chain 70327 chr7 159138663 + 62839683 62840437 L1PA3long 6157 - 0 754 48254 754 chain 49361 chr7 159138663 + 62882627 62883203 L1PA6 6164 - 2 576 59481 6 2 0 568 chain 10645 chr7 159138663 + 62886073 62886192 L1PA7 6471 + 6053 6172 156893 119 chain 67046 chr7 159138663 + 62886192 62886990 L1PA7 6471 - 42 841 49638 114 1 0 7 1 0 567 0 1 41 0 2 67 chain 4225 chr7 159138663 + 62927010 62927057 MADE1 96 - 4 51 204229 47 chain 316289 chr7 159138663 + 62928908 62932882 L1PA2 6032 + 888 6029 12750 30 1 0 616 450 1609 413 6 5 468 0 3 12 1 2 1149 0 3 170 0 3 658 chain 38250 chr7 159138663 + 62929555 62930005 L1P1 4361 - 140 572 70725 70 1 0 219 17 0 143 chain 123495 chr7 159138663 + 62941708 62943111 L1PA4 6152 + 4721 6141 29881 163 0 1 182 0 7 241 0 3 172 0 3 35 0 3 610 chain 8837 chr7 159138663 + 62949209 62949366 Tigger4a 237 + 79 237 166457 20 7 5 39 6 8 26 6 0 7 0 7 46 chain 90814 chr7 159138663 + 62961489 62962548 L1PA6 6164 - 2 1071 39349 18 1 0 148 1 0 5 0 1 294 1 4 202 0 2 166 0 4 207 0 2 16 chain 22435 chr7 159138663 + 62966210 62966463 L1PA4 6152 + 5890 6143 118319 253 chain 9661 chr7 159138663 + 62988571 62988689 L1PA5 6144 + 6020 6138 162294 118 chain 481980 chr7 159138663 + 62994664 63000000 L1PA3long 6157 - 0 5473 7655 4 0 1 495 0 1 9 0 1 1748 0 2 633 0 4 1479 1 0 876 0 128 68 0 1 23 chain 55870 chr7 159138663 + 63000000 63000675 L1P1 4361 - 3682 4357 55198 105 1 0 424 0 1 145 chain 19393 chr7 159138663 + 63001569 63001806 AluY 311 + 57 292 128965 66 6 4 165 chain 17311 chr7 159138663 + 63061154 63061392 L1MC 810 + 350 577 134755 7 11 0 220 chain 25184 chr7 159138663 + 63062599 63062893 AluYk4 311 - 17 311 103831 294 chain 14185 chr7 159138663 + 63102628 63102815 Tigger1 2417 - 938 1126 143936 129 5 6 53 chain 29674 chr7 159138663 + 63108559 63108898 LTR14A 344 - 0 344 85927 305 0 5 34 chain 551098 chr7 159138663 + 63192842 63198971 L1PA3long 6157 + 6 6157 1298 1675 0 2 525 0 4 114 1 0 4 0 1 61 0 4 1125 0 2 92 0 2 743 0 2 91 0 1 834 0 4 15 1 5 72 1 0 768 2 0 5 chain 23701 chr7 159138663 + 63236772 63237063 AluSg4 309 + 6 297 112029 291 chain 42795 chr7 159138663 + 63244575 63245734 LTR71B 605 + 2 605 65666 124 15 27 188 569 0 154 4 5 105 chain 28912 chr7 159138663 + 63248927 63249234 AluYa5 310 - 3 310 89405 307 chain 3406 chr7 159138663 + 63257071 63257109 MIRc 230 - 129 167 216978 38 chain 6469 chr7 159138663 + 63268711 63268787 L1MA3 4352 - 781 857 181480 76 chain 5242 chr7 159138663 + 63274263 63274329 L1PA4 6152 - 1 71 192596 19 0 4 47 chain 7320 chr7 159138663 + 63287931 63288034 MER41C 542 + 0 102 175304 44 7 6 52 chain 5153 chr7 159138663 + 63291576 63291664 MADE1 96 - 0 96 193517 22 20 28 46 chain 8199 chr7 159138663 + 63330166 63330269 L1PA16 3655 + 3313 3416 169960 103 chain 100892 chr7 159138663 + 63334344 63335536 SVA_D 2077 + 421 2071 36541 119 0 40 316 14 105 8 0 1 24 1 4 4 0 1 5 0 1 55 0 303 217 0 18 217 1 0 193 0 1 18 chain 36443 chr7 159138663 + 63365441 63365904 LTR2 463 - 0 463 74306 88 12 13 170 0 1 6 6 0 125 0 4 56 chain 4050 chr7 159138663 + 63388752 63388812 L1PB3 3668 + 3508 3566 206642 20 3 1 37 chain 469318 chr7 159138663 + 63401954 63408140 L1PA8 5853 + 52 5853 8061 19 2 0 8 65 29 68 324 0 126 21 9 152 0 1 132 9 13 110 4 5 161 27 26 13 0 1 946 1 0 145 5 0 871 0 1 90 0 4 246 4 0 471 1 4 204 0 2 306 4 1 118 1 0 200 0 3 37 0 2 141 0 1 214 0 1 72 12 5 113 11 9 432 1 0 43 7 1 71 1 0 13 1 0 50 1 0 18 1 0 93 chain 9168 chr7 159138663 + 63408377 63408568 L1PA13 3608 + 3249 3433 164715 24 2 0 49 16 15 20 1 0 17 35 32 27 chain 33222 chr7 159138663 + 63420232 63420625 L1PA6 6164 - 2 395 78844 150 1 3 7 2 0 233 chain 40644 chr7 159138663 + 63422637 63423184 LTR17 781 - 0 526 68379 12 0 1 144 0 4 116 0 1 96 18 0 58 1 0 22 1 2 4 0 1 13 10 0 52 chain 453352 chr7 159138663 + 63467638 63472922 L1PA6 6164 - 16 5277 8639 420 1 0 1620 0 2 202 4 5 709 0 1 458 1 0 182 3 0 5 0 5 225 14 8 180 5 6 696 23 1 536 chain 18165 chr7 159138663 + 63480246 63480486 THE1D-int 1627 + 17 482 132425 214 1 226 25 chain 22055 chr7 159138663 + 63513533 63514218 THE1B 368 + 0 368 119998 38 16 34 90 1 0 6 364 31 94 1 0 75 chain 50644 chr7 159138663 + 63527346 63527983 L1PA8 5853 + 4912 5562 58542 95 0 2 73 0 2 109 7 12 110 0 4 243 chain 10001 chr7 159138663 + 63527984 63528102 L1PA8 5853 + 5562 5678 160574 47 2 0 69 chain 3738 chr7 159138663 + 63528121 63528160 L1PA8 5853 + 5695 5734 211348 39 chain 7348 chr7 159138663 + 63528189 63528276 L1PA8 5853 + 5761 5848 175108 87 chain 36913 chr7 159138663 + 63548984 63549469 MER9a3 513 - 0 498 73641 77 1 2 68 7 18 285 4 5 43 chain 10579 chr7 159138663 + 63553018 63553148 L1PA6 6164 - 7 133 157914 69 4 0 57 chain 20374 chr7 159138663 + 63553148 63553395 L1PA6 6164 + 5790 6039 125980 146 0 2 101 chain 5520 chr7 159138663 + 63553639 63553703 MSTB 430 + 56 120 189833 64 chain 6393 chr7 159138663 + 63558014 63558133 MSTB 430 - 44 169 182075 23 8 9 32 15 20 41 chain 35376 chr7 159138663 + 63589947 63590378 L1PA7 6471 - 1 438 75698 4 1 0 16 1 0 129 0 8 280 chain 3643 chr7 159138663 + 63595783 63595824 LTR8A 794 + 0 41 212919 41 chain 92380 chr7 159138663 + 63596939 63598005 MER11C 1089 + 0 1079 38848 225 0 5 270 0 1 98 0 1 221 0 5 39 0 1 213 chain 78534 chr7 159138663 + 63604326 63605215 MER11D 897 - 0 897 44251 45 0 4 337 0 2 228 1 0 61 0 3 217 chain 282831 chr7 159138663 + 63614362 63617476 L1PA3long 6157 - 1 3119 14482 544 0 1 1101 0 2 146 0 2 1097 2 1 224 chain 535000 chr7 159138663 + 63620911 63627011 L1PA5 6144 + 3 6138 3591 1151 0 3 257 0 3 27 0 4 858 5 6 67 0 4 47 0 4 385 0 1 299 0 4 54 0 1 1164 0 8 792 0 5 144 0 4 163 4 0 478 4 0 190 0 1 11 chain 24071 chr7 159138663 + 63646183 63646477 L1PA5 6144 - 9 302 109920 104 1 0 189 chain 3876 chr7 159138663 + 63658299 63658344 MER41-int 2638 + 823 868 209223 45 chain 42433 chr7 159138663 + 63681312 63681812 MER9a2 513 - 0 513 66104 313 0 1 155 0 12 32 chain 50040 chr7 159138663 + 63685303 63685955 MER11A 1151 - 408 1150 58995 10 0 2 46 0 1 146 1 0 10 4 0 84 0 1 148 11 7 57 0 4 51 0 91 84 chain 87032 chr7 159138663 + 63740978 63742029 MER11C 1089 - 16 1089 40766 33 1 0 42 0 1 225 0 1 172 12 13 249 3 20 50 0 3 264 chain 22682 chr7 159138663 + 63772034 63772331 AluSg7 307 - 1 298 117155 18 2 0 21 0 1 136 1 2 119 chain 71313 chr7 159138663 + 63792595 63793583 MER11A 1151 - 5 1151 47788 16 1 16 70 10 13 43 9 10 41 1 2 14 0 1 77 5 42 107 9 10 145 0 1 97 0 1 106 0 2 37 4 0 48 0 1 18 1 0 51 7 106 71 chain 132670 chr7 159138663 + 63794009 63795673 L1PA8 5853 + 4179 5849 27483 19 0 4 13 9 7 118 0 1 323 2 0 232 0 2 107 5 7 73 0 2 106 10 13 375 8 0 28 2 0 70 1 0 61 2 1 19 1 0 58 0 9 22 chain 78947 chr7 159138663 + 63841231 63842273 MER11C 1089 + 0 1063 44084 146 0 6 36 0 1 57 0 9 60 1 5 61 1 0 4 1 0 147 38 40 19 6 4 95 0 4 5 1 0 38 7 8 30 1 0 288 chain 30562 chr7 159138663 + 63862101 63862489 MLT2A1 477 + 0 393 83277 142 1 2 24 1 5 220 chain 159799 chr7 159138663 + 63862596 63864632 HERVL-int 5654 + 0 2025 23367 24 0 5 682 0 3 53 17 8 67 5 6 34 6 7 29 0 1 417 22 12 440 4 0 213 5 6 18 chain 73125 chr7 159138663 + 63866050 63866863 L1PA4 6152 - 657 1472 46963 350 0 1 361 0 1 102 chain 58856 chr7 159138663 + 63866863 63867519 L1PA4 6152 + 5495 6152 53484 543 0 1 113 chain 21471 chr7 159138663 + 63891604 63891875 AluSc8 310 + 23 295 122253 30 2 0 79 0 3 160 chain 3390 chr7 159138663 + 63902476 63902517 L1MA6 2487 + 2339 2380 217277 41 chain 41156 chr7 159138663 + 63920249 63920827 LTR61 567 - 0 567 67704 199 12 0 144 4 0 18 20 12 79 0 1 48 0 11 25 7 8 22 chain 26414 chr7 159138663 + 63924805 63925542 MER57E3 465 - 22 465 98358 88 340 36 21 4 14 94 0 6 11 1 0 4 1 2 17 1 0 22 5 0 128 chain 43610 chr7 159138663 + 63942079 63942617 MER41A 554 + 13 554 64673 220 0 3 318 chain 44546 chr7 159138663 + 63948603 63949150 MER41A 554 + 0 554 63529 230 0 3 172 0 4 145 chain 41769 chr7 159138663 + 63959703 63960563 LTR19B 566 + 0 566 66945 144 301 0 329 20 26 15 3 0 17 10 15 5 1 0 15 chain 230704 chr7 159138663 + 63991997 63995507 L1PB1 5432 + 2142 5404 17271 16 1 2 332 0 1 55 328 71 6 5 0 125 0 24 17 16 18 395 3 9 155 2 1 113 0 4 240 4 6 141 1 0 152 0 1 49 0 1 132 0 1 272 0 1 4 1 0 123 0 4 13 3 0 163 5 6 308 1 2 12 0 2 17 1 0 10 2 1 9 6 2 9 2 0 53 2 1 16 1 0 44 4 3 12 1 0 4 49 33 13 3 1 26 1 0 18 1 0 13 chain 2793 chr7 159138663 + 63999589 63999619 L1MB2 1706 + 1372 1402 228823 30 chain 122860 chr7 159138663 + 64013980 64015384 SVA_B 1603 + 4 1603 30094 14 1 35 723 0 80 79 0 41 38 1 0 17 0 40 59 1 0 63 0 4 400 2 0 6 chain 19308 chr7 159138663 + 64022628 64022886 MER57E3 465 + 129 384 129220 17 1 0 4 2 0 234 chain 3283 chr7 159138663 + 64023884 64023986 MER33 330 - 48 155 219300 17 49 54 36 chain 23078 chr7 159138663 + 64026870 64027161 AluSg7 307 - 2 296 115257 26 1 3 144 0 1 120 chain 2920 chr7 159138663 + 64034546 64034644 MER33 330 + 175 277 226688 36 47 51 15 chain 26914 chr7 159138663 + 64036500 64036812 L1PA5 6144 - 4 316 96581 312 chain 12940 chr7 159138663 + 64036826 64037025 MER57E3 465 - 134 330 148467 10 3 0 155 4 6 16 2 0 9 chain 1491 chr7 159138663 + 64037027 64037148 AluSp 311 + 1 137 125050 63 1 16 57 chain 112849 chr7 159138663 + 64037207 64038509 SVA_D 2077 + 0 2074 33417 4 0 1 8 5 0 12 5 0 176 1 0 77 0 1 246 7 47 163 0 741 598 chain 2255 chr7 159138663 + 64038522 64038705 AluSp 311 + 139 311 125050 41 13 0 95 0 2 34 chain 43191 chr7 159138663 + 64055185 64055678 LTR2C 499 + 0 499 65183 306 0 1 21 0 2 121 0 3 45 chain 51502 chr7 159138663 + 64056664 64057342 L1PA8 5853 - 0 696 57965 93 1 0 19 2 1 47 2 0 14 1 0 71 2 0 6 1 20 18 1 0 40 0 4 75 0 1 30 0 2 255 chain 38459 chr7 159138663 + 64066188 64066715 HERV1_LTRd 520 - 3 520 71503 39 0 1 117 7 2 199 8 9 12 3 2 72 6 1 9 1 0 54 chain 324463 chr7 159138663 + 64105393 64108943 L1PA3long 6157 - 0 3558 12419 997 0 5 797 0 4 1165 1 0 590 chain 213899 chr7 159138663 + 64120908 64123606 L1P2 5180 + 617 3334 18235 122 25 4 12 1 5 23 0 15 64 1 0 77 0 19 79 7 8 5 1 0 240 0 3 164 2 0 124 0 3 1626 1 0 124 chain 28463 chr7 159138663 + 64128535 64128859 L1PA4 6152 - 0 334 91325 268 0 10 56 chain 55064 chr7 159138663 + 64147927 64148635 LTR70 1284 + 33 755 55665 145 0 1 361 0 1 29 0 1 116 0 4 12 6 16 19 8 5 12 chain 59002 chr7 159138663 + 64157199 64157861 L1PA5 6144 - 0 664 53395 21 0 2 641 chain 25757 chr7 159138663 + 64158070 64158357 AluYc3 301 - 14 301 101052 287 chain 19108 chr7 159138663 + 64162996 64163228 AluSp 311 - 73 303 129798 161 2 0 69 chain 137798 chr7 159138663 + 64177666 64179262 SVA_D 2077 + 6 2076 26516 26 7 0 535 0 40 157 0 40 112 1 38 37 0 2 10 17 196 17 0 1 7 0 1 6 0 176 34 0 4 4 0 1 626 chain 229838 chr7 159138663 + 64184075 64189716 L1PB1 5432 - 5 5341 17316 5 2 0 18 1 0 9 5 4 21 1 0 23 3 1 15 1 0 4 3 1 11 51 38 110 2 0 8 5 1 12 4 3 5 1 0 21 4 1 10 1980 2000 91 0 1 24 1 0 148 1 0 6 6 0 156 3 1 6 0 1 77 1 5 92 1 2 19 0 1 142 7 8 40 0 16 10 5 6 7 2 0 473 2 0 371 5 15 180 318 0 431 0 4 217 0 3 13 5 4 123 0 2 10 1 0 147 17 17 89 2 0 57 chain 8644 chr7 159138663 + 64192955 64193057 LTR9B 643 - 82 183 167508 66 0 1 24 2 0 10 chain 142877 chr7 159138663 + 64198170 64199980 SVA_D 2077 - 4 2077 25667 455 1 0 182 125 0 35 6 5 7 0 1 336 1 0 6 7 150 171 0 232 453 1 18 12 1 0 6 1 0 4 chain 9013 chr7 159138663 + 64198808 64198933 SVA_D 2077 - 866 993 83132 78 1 0 40 0 3 6 chain 26567 chr7 159138663 + 64206228 64206553 PABL_B 668 - 240 566 97779 171 0 1 154 chain 89005 chr7 159138663 + 64207512 64209064 PABL_A-int 1935 - 93 1331 40003 5 1 0 110 313 29 351 0 1 77 0 5 25 47 0 226 0 1 4 1 0 20 1 0 93 4 3 5 0 2 191 2 1 26 1 0 4 0 14 45 chain 6885 chr7 159138663 + 64209364 64209449 PABL_A-int 1935 + 530 615 178319 85 chain 12628 chr7 159138663 + 64213419 64213598 PABL_B 668 - 470 668 149736 100 0 9 48 8 18 23 chain 28240 chr7 159138663 + 64216307 64216725 LTR3B 427 + 0 411 92153 97 5 6 5 0 1 189 46 37 13 1 0 38 0 1 24 chain 53197 chr7 159138663 + 64220797 64221470 HERV9-int 5642 - 818 3288 56896 11 0 1 48 0 1 127 0 1795 487 chain 22120 chr7 159138663 + 64222311 64222580 AluSp 311 + 28 298 119701 249 0 1 20 chain 140728 chr7 159138663 + 64244516 64246088 SVA_D 2077 + 62 2076 26034 835 0 415 33 1 2 41 0 1 67 0 17 392 0 8 203 chain 29027 chr7 159138663 + 64255328 64255766 MER57E3 465 - 19 465 88865 30 0 4 51 5 6 49 0 4 25 0 1 132 1 0 22 30 29 93 chain 2439 chr7 159138663 + 64262206 64262303 PRIMA4_LTR 623 + 0 97 85306 97 chain 52896 chr7 159138663 + 64262307 64263077 MER4E 760 - 0 760 57081 8 0 2 91 8 11 81 10 12 108 2 1 55 0 2 23 1 3 14 1 0 8 11 8 25 4 0 41 1 0 48 1 0 49 9 0 111 0 1 4 9 7 47 chain 7944 chr7 159138663 + 64263077 64263393 PRIMA4_LTR 623 + 97 478 85306 91 4 0 20 0 14 91 6 0 7 3 64 94 chain 39348 chr7 159138663 + 64264454 64264916 LTR2 463 + 0 463 70257 61 0 3 300 1 0 77 1 0 22 chain 37254 chr7 159138663 + 64267233 64267701 MER9a2 513 + 0 513 73164 47 1 0 213 13 59 194 chain 8016 chr7 159138663 + 64267701 64267842 LTR70 1284 + 1145 1282 170955 6 2 0 4 0 1 37 1 0 43 17 16 24 1 0 6 chain 154172 chr7 159138663 + 64268964 64270815 SVA_F 1814 - 2 1805 24078 10 5 0 4 0 1 192 0 8 478 51 0 91 51 0 27 1 0 18 1 0 21 1 16 9 1 0 59 2 0 5 0 40 824 chain 3651 chr7 159138663 + 64269653 64269704 SVA_F 1814 - 886 936 167782 40 1 0 10 chain 2232 chr7 159138663 + 64269795 64269846 SVA_F 1814 - 835 899 173987 11 1 0 5 2 17 9 0 2 5 3 0 15 chain 31223 chr7 159138663 + 64295272 64295615 HERV-Fc1_LTR1 345 - 0 345 82118 65 0 2 278 chain 415004 chr7 159138663 + 64295625 64300190 HERV-Fc1-int 4575 - 10 4575 9668 262 1 0 836 0 3 523 0 2 425 0 1 1121 0 2 404 5 1 313 1 0 380 2 0 292 chain 30899 chr7 159138663 + 64300190 64300536 HERV-Fc1_LTR1 345 - 0 345 82685 65 1 0 280 chain 65895 chr7 159138663 + 64307724 64308619 L1PB1 5432 - 3425 4359 50144 92 0 23 22 7 10 246 1 0 37 0 2 161 0 5 44 0 1 199 19 25 67 chain 159632 chr7 159138663 + 64315927 64318047 SVA_F 1814 + 10 1814 23379 845 77 31 12 204 0 50 2 17 187 77 0 18 2 0 17 1 0 617 1 0 10 chain 3507 chr7 159138663 + 64316772 64316849 SVA_F 1814 + 905 999 91828 40 1 17 32 1 2 3 chain 6514 chr7 159138663 + 64316861 64317004 SVA_F 1814 + 1011 1155 91828 99 0 1 44 chain 3507 chr7 159138663 + 64317304 64317381 SVA_F 1814 + 1202 1278 91828 61 15 14 1 chain 22289 chr7 159138663 + 64321902 64322182 AluY 311 + 20 295 118950 27 0 1 75 9 3 169 chain 11218 chr7 159138663 + 64322589 64322717 L1PA5 6144 + 5995 6123 155354 128 chain 33682 chr7 159138663 + 64323883 64324371 MER9a3 513 + 14 513 78124 8 0 1 77 14 15 49 2 1 93 0 17 17 21 13 129 1 2 77 chain 17464 chr7 159138663 + 64362069 64362275 AluSp 311 + 23 230 134345 185 0 1 21 chain 5950 chr7 159138663 + 64362319 64362392 AluSz 310 + 3 73 185674 32 3 0 38 chain 19052 chr7 159138663 + 64363126 64363357 MER4A1 472 - 241 472 129965 231 chain 23886 chr7 159138663 + 64364154 64364464 MER57E3 465 - 16 336 110986 152 0 6 146 1 5 11 chain 41505 chr7 159138663 + 64375639 64376137 MER9a3 513 - 0 513 67274 66 0 2 134 8 12 156 0 9 134 chain 195032 chr7 159138663 + 64408384 64410675 HERVK9-int 4720 + 2430 4720 19584 620 0 4 242 12 7 1390 9 8 5 0 1 13 chain 37264 chr7 159138663 + 64410689 64411166 MER9a3 513 + 15 505 73152 105 0 1 81 4 16 38 1 0 177 2 3 69 chain 28739 chr7 159138663 + 64415208 64415507 AluYb8 318 + 10 309 90174 299 chain 29410 chr7 159138663 + 64416347 64416657 AluYg6 310 - 0 310 87025 310 chain 10501 chr7 159138663 + 64424327 64424514 L1PB1 5432 + 5196 5414 158244 23 1 0 18 2 1 31 4 45 13 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 chain 173576 chr7 159138663 + 64427312 64429498 SVA_D 2077 - 0 2077 21640 97 0 4 511 5 0 107 1 2 16 3 0 95 49 0 202 1 0 7 74 0 6 50 0 61 0 1 20 4 0 5 8 0 25 2 0 153 0 40 75 0 40 585 5 6 19 chain 2304 chr7 159138663 + 64428147 64428180 SVA_D 2077 - 959 992 110624 33 chain 5567 chr7 159138663 + 64428406 64428480 SVA_D 2077 - 866 940 72352 74 chain 3686 chr7 159138663 + 64428486 64428535 SVA_D 2077 - 946 996 72352 33 0 1 16 chain 28867 chr7 159138663 + 64459721 64460314 LTR4 552 - 0 552 89594 135 55 48 52 31 4 17 17 19 87 1 0 68 14 9 25 16 29 14 30 14 31 chain 7867 chr7 159138663 + 64478673 64478764 LTR71B 605 + 0 91 171894 91 chain 23518 chr7 159138663 + 64486261 64486560 AluY 311 + 14 303 113024 109 13 3 177 chain 22533 chr7 159138663 + 64487930 64488184 L1PA4 6152 + 5889 6143 117881 254 chain 128977 chr7 159138663 + 64493300 64494749 SVA_C 1631 + 0 1618 28314 17 10 4 195 0 1 502 0 40 91 0 134 634 chain 27084 chr7 159138663 + 64553043 64553389 MER41A 554 - 210 554 95990 14 8 6 324 chain 64007 chr7 159138663 + 64557565 64558332 L1PA7 6471 - 6 792 51003 57 1 11 119 0 2 525 0 2 34 0 3 12 0 2 19 chain 18724 chr7 159138663 + 64569163 64569441 THE1B 368 - 59 362 130897 66 33 44 30 1 0 110 0 15 38 chain 3349 chr7 159138663 + 64572310 64572394 MLT1D 503 - 9 94 218067 35 32 33 17 chain 70071 chr7 159138663 + 64617371 64618164 L1PA4 6152 - 583 1376 48360 793 chain 49263 chr7 159138663 + 64618164 64618727 L1PA4 6152 + 5577 6141 59542 431 0 1 132 chain 96788 chr7 159138663 + 64619107 64620246 L1PA7 6471 - 15 1150 37618 828 5 0 187 1 2 118 chain 7797 chr7 159138663 + 64624592 64624757 Tigger4a 237 - 66 215 172321 15 47 38 14 7 0 82 chain 122375 chr7 159138663 + 64634798 64636277 L1PA7 6471 - 7 1478 30258 12 1 0 165 13 11 650 30 24 161 1 2 446 chain 27662 chr7 159138663 + 64636817 64637119 AluYa5 310 - 8 310 94177 302 chain 28903 chr7 159138663 + 64647705 64648009 AluYa5 310 - 6 310 89445 304 chain 147212 chr7 159138663 + 64674979 64676630 L1PA4 6152 - 22 1703 25002 282 0 29 1160 0 1 209 chain 73795 chr7 159138663 + 64703396 64704356 LTR5_Hs 974 - 0 974 46619 103 2 9 7 9 0 21 8 15 163 1 0 188 0 1 46 0 1 130 0 1 122 1 0 39 5 13 115 chain 7362 chr7 159138663 + 64704449 64704592 MER1B 344 + 106 245 175020 71 43 39 29 chain 25843 chr7 159138663 + 64717202 64717511 AluY 311 + 3 308 100679 123 1 0 177 3 0 5 chain 126502 chr7 159138663 + 64717743 64719160 SVA_C 1631 + 20 1628 28942 12 0 8 12 0 8 306 0 1 90 0 39 351 0 134 22 0 1 624 chain 2281 chr7 159138663 + 64722642 64722742 LTR5_Hs 974 - 0 100 44676 100 chain 176477 chr7 159138663 + 64722827 64725165 SVA_E 1901 + 0 1901 21306 145 2 0 672 255 0 106 53 0 148 127 0 830 chain 17151 chr7 159138663 + 64723647 64723901 SVA_E 1901 + 817 1115 66810 26 1 0 84 4 0 27 20 69 92 chain 3056 chr7 159138663 + 64724028 64724060 SVA_E 1901 + 817 849 211570 32 chain 3984 chr7 159138663 + 64724208 64724267 SVA_E 1901 + 1324 1382 66810 41 4 3 14 chain 4104 chr7 159138663 + 64724289 64724335 SVA_E 1901 + 1151 1197 110336 46 chain 19957 chr7 159138663 + 64725171 64726046 LTR5_Hs 974 - 100 974 44676 5 0 1 91 0 19 28 0 3 185 3 4 122 7 0 150 18 0 266 chain 3239 chr7 159138663 + 64742659 64742702 L1M3a 1038 - 209 253 220237 30 0 1 13 chain 3996 chr7 159138663 + 64744591 64744777 L1MB2 1706 - 12 183 207436 24 74 73 15 36 22 37 chain 25865 chr7 159138663 + 64749260 64749603 L1PA11 4918 + 4065 4419 100588 131 0 10 59 0 4 63 1 0 60 3 2 12 1 0 13 chain 31796 chr7 159138663 + 64758726 64761884 L1PB1 5432 - 106 2636 81177 18 26 14 13 2 0 45 1 0 15 2 1 52 2 0 6 8 4 12 11 8 25 11 0 8 2513 1927 171 0 1 110 15 8 7 1 0 39 1 0 9 0 2 35 chain 44963 chr7 159138663 + 64805007 64805502 L1PA2 6032 - 16 510 63104 320 1 0 174 chain 58159 chr7 159138663 + 64805502 64806129 L1PA2 6032 + 4896 5523 53895 627 chain 240167 chr7 159138663 + 64809298 64812687 L1PA8 5853 - 0 3109 16763 93 1 0 19 2 1 52 1 0 6 1 0 74 2 0 44 1 0 189 0 13 133 7 6 41 1 2 101 9 13 57 0 2 117 0 1 389 1 5 79 0 9 51 301 0 350 1 0 347 9 0 432 5 6 139 0 1 104 8 9 83 1 0 49 0 3 89 chain 37162 chr7 159138663 + 64818695 64819125 L1PA5 6144 + 5708 6138 73292 430 chain 31067 chr7 159138663 + 64839309 64839766 MER57E3 465 - 16 465 82407 237 0 4 37 24 0 6 4 16 14 7 6 71 0 1 57 chain 84351 chr7 159138663 + 64846912 64848134 LTR70 1284 + 11 1272 41770 243 0 4 285 0 2 133 3 12 98 3 0 5 7 10 16 41 53 184 46 48 51 0 1 35 0 10 35 1 0 36 chain 85381 chr7 159138663 + 64871869 64872860 L1P1 4361 - 3369 4360 41385 991 chain 529553 chr7 159138663 + 64879705 64885793 L1PA4 6152 + 6 6136 4239 1014 1 0 445 0 42 48 1 0 700 0 2 761 2 0 195 0 1 78 1 0 390 0 1 271 0 2 123 4 0 86 27 28 158 0 4 814 1 0 209 1 0 758 chain 17891 chr7 159138663 + 64893102 64893400 L1PA8 5853 + 5564 5853 133128 93 1 32 13 38 0 38 2 1 19 1 0 93 chain 77869 chr7 159138663 + 64911518 64912522 LTR13 1007 - 0 1007 44580 31 2 1 156 3 4 115 3 6 65 2 1 242 4 5 116 1 3 189 2 0 73 chain 529325 chr7 159138663 + 64929406 64935484 L1PA4 6152 - 5 6088 4265 322 0 3 450 1 0 245 5 0 242 0 1 1608 0 1 113 0 2 142 2 0 611 1 0 202 0 4 543 0 1 771 1 2 639 0 1 180 chain 531034 chr7 159138663 + 64945196 64951345 L1PA4 6152 + 6 6152 4077 878 1 2 154 1 0 121 0 3 974 20 5 878 2 0 591 0 2 315 0 1 331 0 3 374 0 5 16 0 1 980 0 1 52 4 5 447 3 0 7 chain 28832 chr7 159138663 + 64955081 64955390 AluYa5 310 - 1 310 89754 309 chain 3249 chr7 159138663 + 64983474 64983511 MLT1A0 366 + 113 150 220035 37 chain 50333 chr7 159138663 + 64985878 64986481 L1PA7 6471 + 5865 6464 58764 411 14 11 165 1 0 12 chain 20514 chr7 159138663 + 64998649 64998972 L1M2c 2366 + 1622 1931 125584 124 7 9 63 4 0 30 1 0 52 11 7 11 1 0 1 6 0 12 chain 3404 chr7 159138663 + 65000996 65001045 L1MA6 2487 + 2340 2386 217005 39 3 0 7 chain 96174 chr7 159138663 + 65001045 65002187 L1PA7 6471 + 5321 6456 37775 118 1 2 183 9 1 831 chain 49743 chr7 159138663 + 65002557 65003123 L1PA4 6152 - 9 575 59197 566 chain 70720 chr7 159138663 + 65003123 65003917 L1PA4 6152 + 4776 5569 48058 621 1 0 172 chain 3626 chr7 159138663 + 65048914 65048998 MLT1D 503 + 409 494 213219 19 30 31 35 chain 18724 chr7 159138663 + 65051869 65052147 THE1B 368 + 6 309 130896 38 0 15 110 1 0 30 33 44 66 chain 128209 chr7 159138663 + 65061812 65063259 L1PA4 6152 - 1 1447 28522 5 2 0 107 0 1 42 1 0 701 0 1 589 chain 7990 chr7 159138663 + 65072599 65072748 L1PA17 2846 - 153 298 171119 13 0 1 30 1 0 17 5 4 11 5 6 11 1 0 9 3 0 43 chain 14390 chr7 159138663 + 65087875 65088114 L1PA8 5853 + 5617 5853 143230 58 42 41 24 2 1 19 1 0 93 chain 75259 chr7 159138663 + 65093908 65094724 L1PA3long 6157 + 5340 6157 45891 704 0 1 112 chain 70720 chr7 159138663 + 65128579 65129373 L1PA4 6152 - 583 1376 48059 173 1 0 620 chain 49743 chr7 159138663 + 65129373 65129939 L1PA4 6152 + 5577 6143 59196 566 chain 95706 chr7 159138663 + 65130309 65131450 L1PA7 6471 - 15 1150 37895 828 5 0 14 3 1 172 1 2 118 chain 20659 chr7 159138663 + 65133516 65133838 L1M2c 2366 - 435 744 125109 7 6 0 17 11 7 52 1 0 30 4 0 63 7 9 124 chain 7666 chr7 159138663 + 65135798 65135963 Tigger4a 237 - 66 215 173138 15 47 38 14 7 0 82 chain 122652 chr7 159138663 + 65146010 65147490 L1PA7 6471 - 7 1478 30177 12 1 0 165 14 11 650 30 24 161 1 2 446 chain 149337 chr7 159138663 + 65185422 65187094 L1PA4 6152 - 1 1703 24711 303 0 29 1161 0 1 208 chain 24688 chr7 159138663 + 65201881 65202170 AluSp 311 + 11 300 106505 289 chain 13346 chr7 159138663 + 65213022 65213221 L1PA8 5853 - 0 195 146904 93 1 0 15 8 7 50 1 0 9 2 1 20 chain 62282 chr7 159138663 + 65251628 65252395 L1PA7 6471 - 6 792 51763 57 4 14 116 1 3 524 0 2 34 0 3 12 0 2 19 chain 2845 chr7 159138663 + 65279363 65279421 MER8 282 + 209 260 227937 26 17 10 15 chain 27678 chr7 159138663 + 65292778 65293145 MER1A 529 + 124 493 94119 170 16 18 181 chain 29208 chr7 159138663 + 65312305 65312610 AluYa8 305 - 0 305 88015 305 chain 7867 chr7 159138663 + 65319701 65319792 LTR71B 605 + 0 91 171893 91 chain 22322 chr7 159138663 + 65319804 65320095 AluY 311 + 10 295 118812 119 1 0 160 5 0 6 chain 23688 chr7 159138663 + 65327324 65327612 AluY 311 + 14 300 112095 109 3 0 9 0 1 167 chain 22555 chr7 159138663 + 65328973 65329226 L1PA4 6152 + 5890 6143 117785 253 chain 22130 chr7 159138663 + 65359449 65359726 AluY 311 + 0 292 119661 15 0 16 101 6 7 148 2 0 5 chain 4125 chr7 159138663 + 65381201 65381250 L1MC5 759 - 495 544 205576 49 chain 21756 chr7 159138663 + 65391475 65391890 L1PB3 3668 + 3233 3613 121187 58 1 0 17 5 1 82 2 1 57 4 3 26 20 4 19 8 6 21 3 1 37 7 3 12 2 1 13 7 4 14 chain 22644 chr7 159138663 + 65435598 65435909 AluY 311 + 0 294 117356 87 0 4 41 0 1 153 22 0 8 chain 19173 chr7 159138663 + 65436807 65437032 AluSp 311 + 62 288 129604 69 0 1 156 chain 5071 chr7 159138663 + 65448278 65448336 MER50 708 - 32 90 194406 58 chain 8156 chr7 159138663 + 65453970 65454092 MER4A 717 + 0 121 170190 27 1 0 4 1 2 55 2 0 18 0 1 14 chain 1691 chr7 159138663 + 65457364 65457546 LTR15 485 + 0 184 77502 81 0 2 101 chain 37545 chr7 159138663 + 65457965 65458398 L1PA5 6144 - 13 447 72761 128 8 9 297 chain 183217 chr7 159138663 + 65458398 65460418 L1PA5 6144 + 3696 5716 20658 2020 chain 5565 chr7 159138663 + 65460433 65461032 LTR15 485 + 184 477 77502 169 306 0 124 chain 77604 chr7 159138663 + 65469670 65470663 LTR5B 1012 - 0 1012 44688 167 36 40 54 0 2 261 1 0 340 0 14 134 chain 23578 chr7 159138663 + 65478398 65478691 AluSq2 311 + 6 298 112697 278 1 0 14 chain 3285 chr7 159138663 + 65481979 65482016 HY3 101 - 2 39 219265 37 chain 22104 chr7 159138663 + 65482987 65483249 AluY 311 + 5 268 119764 127 0 1 135 chain 2940 chr7 159138663 + 65485442 65485476 L1MB3 1562 + 29 63 226328 34 chain 24918 chr7 159138663 + 65502311 65502599 AluY 311 + 3 292 105228 131 0 1 157 chain 4119 chr7 159138663 + 65505136 65505183 MER21A 919 - 860 907 205664 47 chain 10524 chr7 159138663 + 65505215 65505345 MER2 342 + 192 322 158151 130 chain 18885 chr7 159138663 + 65521143 65521369 Tigger1 2417 + 584 810 130411 226 chain 8563 chr7 159138663 + 65527110 65527271 MSTA 426 - 241 426 167940 37 43 67 81 chain 3277 chr7 159138663 + 65533945 65533983 L1M4c 1769 - 1289 1327 219411 38 chain 24083 chr7 159138663 + 65537014 65537312 AluSp 311 - 0 300 109849 106 1 2 9 0 1 182 chain 9409 chr7 159138663 + 65567086 65567211 Tigger1 2417 + 2084 2205 163511 106 4 0 15 chain 17864 chr7 159138663 + 65569841 65570061 Tigger1 2417 - 1609 1833 133206 125 0 4 95 chain 5575 chr7 159138663 + 65575250 65575332 MLT1D 503 - 165 248 189321 34 10 11 38 chain 10814 chr7 159138663 + 65583555 65583689 MER2 342 - 20 154 156917 134 chain 3606 chr7 159138663 + 65583716 65583756 MER21A 919 + 11 51 213553 40 chain 24759 chr7 159138663 + 65584894 65585199 AluY 311 + 6 311 106111 7 0 1 118 0 1 40 2 0 138 chain 24081 chr7 159138663 + 65597620 65597900 AluYc3 301 + 0 274 109869 115 6 0 159 chain 6382 chr7 159138663 + 65600521 65600590 L1PA5 6144 - 12 81 182167 69 chain 24029 chr7 159138663 + 65603492 65603794 AluY 311 + 2 297 110166 121 0 3 7 17 6 97 0 1 60 chain 7667 chr7 159138663 + 65606215 65606320 L1MA3 4352 - 140 247 173121 32 1 0 66 0 3 6 chain 5000 chr7 159138663 + 65620451 65620522 L1MA3 4352 + 4112 4186 195135 59 1 4 11 chain 3535 chr7 159138663 + 65621815 65621854 LTR35 598 + 149 188 214780 39 chain 11311 chr7 159138663 + 65645098 65645231 AluSp 311 + 159 292 155022 133 chain 5851 chr7 159138663 + 65659083 65659159 MER34A 573 - 17 92 186680 13 1 0 62 chain 25975 chr7 159138663 + 65692015 65692317 AluSg7 307 - 4 307 100119 171 0 1 131 chain 132618 chr7 159138663 + 65695321 65696890 LTR12C 1709 - 0 1709 27496 74 0 1 367 1 0 39 0 4 103 6 4 5 1 0 264 0 118 327 14 35 368 chain 34763 chr7 159138663 + 65700600 65701194 MER4A1 472 - 0 472 76521 63 18 19 16 3 0 5 0 3 245 123 0 121 chain 14557 chr7 159138663 + 65701509 65701722 MER4A1 472 + 239 453 142717 106 6 6 50 7 8 44 chain 54264 chr7 159138663 + 65702830 65703498 PABL_A 660 - 0 660 56193 98 1 2 9 0 3 458 17 5 85 chain 4101 chr7 159138663 + 65750114 65750162 MER46C 351 - 34 82 205933 48 chain 567098 chr7 159138663 + 65751840 65757871 L1HS 6032 - 0 6032 83 774 0 1 5257 chain 46167 chr7 159138663 + 65828486 65829078 LTR71B 605 - 0 605 61878 105 3 4 247 1 0 40 0 1 71 1 11 45 1 0 71 0 3 7 chain 7324 chr7 159138663 + 65833166 65833319 L1MA3 4352 - 0 144 175273 22 6 2 14 14 13 13 2 1 5 1 0 27 2 0 47 chain 19024 chr7 159138663 + 65851940 65852180 AluSp 311 + 74 311 130053 57 1 0 172 2 0 8 chain 169502 chr7 159138663 + 65857741 65860048 SVA_E 1901 - 22 1901 22114 606 0 1 4 0 1 239 167 0 105 300 0 87 1 0 19 1 0 258 0 40 374 1 0 145 chain 2537 chr7 159138663 + 65858609 65858682 SVA_E 1901 - 891 974 139347 31 2 13 4 1 0 35 chain 1989 chr7 159138663 + 65858688 65858744 SVA_E 1901 - 678 734 112638 56 chain 6415 chr7 159138663 + 65858862 65858939 SVA_E 1901 - 880 958 164323 61 1 2 15 chain 4583 chr7 159138663 + 65858939 65859068 SVA_E 1901 - 734 863 112638 129 chain 1802 chr7 159138663 + 65859068 65859109 SVA_E 1901 - 755 796 143310 41 chain 3355 chr7 159138663 + 65859127 65859161 SVA_E 1901 - 772 806 217980 34 chain 10596 chr7 159138663 + 65896676 65896793 L1P1 4361 - 2184 2301 157840 117 chain 30929 chr7 159138663 + 65896793 65897129 L1PA2 6032 + 5696 6032 82634 336 chain 27768 chr7 159138663 + 66057683 66058080 LTR7 482 + 0 474 93806 101 13 63 60 5 37 44 0 1 80 12 6 82 chain 45257 chr7 159138663 + 66059001 66059523 MER9a2 513 + 0 513 62762 172 8 0 152 1 0 189 chain 28625 chr7 159138663 + 66066469 66066779 AluYb8 318 - 8 318 90634 310 chain 120980 chr7 159138663 + 66079041 66080481 SVA_C 1631 + 0 1619 30700 17 0 18 161 0 1 449 3 0 30 0 77 64 20 108 77 1 0 16 6 5 354 0 1 61 2 1 179 chain 82867 chr7 159138663 + 66083944 66084913 LTR5_Hs 974 - 3 974 42390 60 1 0 395 1 0 54 0 4 458 chain 22675 chr7 159138663 + 66086712 66086974 AluY 311 + 40 301 117184 93 1 0 168 chain 22569 chr7 159138663 + 66090936 66091222 AluY 311 + 0 286 117721 64 2 0 59 6 4 141 0 4 14 chain 10352 chr7 159138663 + 66109050 66109227 THE1D 372 - 0 178 158896 87 0 1 4 4 5 41 29 28 12 chain 4043 chr7 159138663 + 66125577 66125624 AluSq10 312 + 240 290 206762 38 0 3 9 chain 37448 chr7 159138663 + 66127958 66128390 MER9a1 513 + 81 513 72894 432 chain 13381 chr7 159138663 + 66128584 66128738 L1PA3long 6157 + 6003 6156 146782 149 1 0 4 chain 29331 chr7 159138663 + 66170870 66171188 AluYb8 318 - 0 318 87391 318 chain 2685 chr7 159138663 + 66232477 66232512 L1MD2 1676 - 211 245 230379 24 1 0 10 chain 14443 chr7 159138663 + 66246358 66246547 L1PA7 6471 - 7 195 143070 39 0 2 86 3 0 61 chain 3419 chr7 159138663 + 66271164 66271374 Arthur1C 363 + 105 337 216788 26 8 24 17 136 142 23 chain 28571 chr7 159138663 + 66285480 66285778 AluYa5 310 - 12 310 90862 298 chain 56582 chr7 159138663 + 66341756 66342368 SVA_D 2077 - 0 612 54800 612 chain 2845 chr7 159138663 + 66355878 66355936 MER8 282 + 209 260 227936 26 17 10 15 chain 192872 chr7 159138663 + 66371823 66374316 HERVL-int 5654 - 0 2591 19780 101 11 8 39 19 22 26 15 16 23 1 9 46 0 3 131 0 7 7 0 3 100 0 28 87 5 7 93 0 3 88 0 1 296 5 10 129 0 4 94 1 2 113 7 16 65 0 1 146 0 3 117 0 2 412 0 1 162 0 16 154 chain 7956 chr7 159138663 + 66391224 66391325 L1MA7 2200 + 1241 1342 171297 101 chain 20696 chr7 159138663 + 66403016 66403316 L1M1 2793 - 281 585 124981 57 16 15 21 1 3 158 1 0 25 0 4 21 chain 5273 chr7 159138663 + 66419230 66419297 MER2 342 - 143 211 192285 63 0 1 4 chain 10351 chr7 159138663 + 66435903 66436044 MSTA 426 - 9 170 158899 100 4 24 37 chain 24673 chr7 159138663 + 66442467 66442761 AluSp 311 - 7 303 106593 27 0 2 267 chain 25039 chr7 159138663 + 66454254 66454537 AluSp 311 + 4 287 104601 283 chain 2720 chr7 159138663 + 66471736 66471765 MSTA 426 + 396 425 229894 29 chain 12382 chr7 159138663 + 66490261 66490445 MER30 238 - 2 238 150700 76 1 7 27 4 18 50 1 33 25 chain 25102 chr7 159138663 + 66492638 66492931 AluY 311 + 3 297 104275 129 0 1 164 chain 22860 chr7 159138663 + 66498685 66498970 AluSg7 307 - 12 298 116288 168 5 6 112 chain 12270 chr7 159138663 + 66524390 66524617 MER65A 464 - 125 357 151116 26 1 0 104 40 36 37 7 17 12 chain 2670 chr7 159138663 + 66529061 66529122 L1MD 993 + 405 467 230768 18 21 22 22 chain 49217 chr7 159138663 + 66540800 66541393 LTR10C 591 + 0 591 59577 34 2 0 557 chain 4965 chr7 159138663 + 66549390 66549450 MER5A 189 - 3 63 195533 60 chain 18545 chr7 159138663 + 66550197 66550576 THE1D 372 + 0 363 131375 15 10 9 27 59 44 68 35 37 24 1 0 87 1 0 52 chain 64495 chr7 159138663 + 66555820 66556562 L1PA5 6144 + 5403 6141 50803 732 4 0 6 chain 36549 chr7 159138663 + 66565856 66566402 LTR19B 566 - 5 566 74173 25 21 24 11 3 12 35 1 0 109 4 1 46 1 2 197 1 6 17 8 9 67 chain 43466 chr7 159138663 + 66596568 66597117 MLT2A2 560 - 0 559 64851 69 0 2 73 6 17 58 1 0 161 1 0 50 1 0 129 chain 4563 chr7 159138663 + 66604485 66604582 MER8 282 - 13 112 200069 33 1 0 12 30 33 21 chain 24109 chr7 159138663 + 66604896 66605254 THE1B 368 - 1 368 109698 76 1 0 92 6 0 18 18 17 50 6 7 32 0 1 15 0 15 44 chain 22011 chr7 159138663 + 66607766 66608055 AluSq2 311 + 11 298 120178 22 5 4 223 2 1 37 chain 3526 chr7 159138663 + 66616738 66616777 MER58A 224 + 47 86 214950 39 chain 25737 chr7 159138663 + 66627001 66627323 AluY 311 + 0 305 101129 125 17 0 180 chain 25436 chr7 159138663 + 66673399 66673696 AluSg 306 + 3 300 102518 297 chain 31758 chr7 159138663 + 66680612 66681031 MLT2A1 477 - 0 475 81237 18 2 1 20 0 53 212 8 12 20 0 1 112 1 0 26 chain 11703 chr7 159138663 + 66713554 66713696 LTR8 732 - 0 146 153452 130 0 4 12 chain 29150 chr7 159138663 + 66713716 66714022 AluYg6 310 - 3 309 88315 306 chain 14423 chr7 159138663 + 66717047 66717538 LTR10G 522 - 25 522 143142 30 4 0 54 230 228 11 5 0 40 9 16 27 7 0 22 0 7 19 10 20 23 chain 29064 chr7 159138663 + 66717931 66718244 AluYb8 318 - 5 318 88700 313 chain 46300 chr7 159138663 + 66719414 66719965 MER41A 554 - 0 554 61771 451 0 3 100 chain 25506 chr7 159138663 + 66731025 66731478 MER4D1 891 + 0 450 102197 41 0 1 6 2 0 5 24 15 20 64 72 19 1 0 9 0 2 224 1 0 16 1 0 20 chain 15871 chr7 159138663 + 66736880 66737067 L1PA5 6144 + 5939 6126 138740 187 chain 6255 chr7 159138663 + 66762642 66762713 HY3 101 - 2 73 183126 71 chain 14140 chr7 159138663 + 66779452 66779714 Tigger1 2417 - 1913 2187 144076 60 14 23 43 4 0 22 31 34 22 1 5 65 chain 29603 chr7 159138663 + 66789521 66789837 AluYb8 318 + 0 316 86202 316 chain 30262 chr7 159138663 + 66798127 66798444 AluYb8 318 + 0 317 84028 317 chain 40492 chr7 159138663 + 66809801 66810357 MER61E 571 + 0 564 68602 15 8 12 231 0 1 42 2 0 22 1 0 75 9 11 21 0 3 97 0 1 33 chain 19077 chr7 159138663 + 66816139 66816466 THE1D 372 - 51 361 129889 90 1 0 6 1 0 32 25 27 75 7 11 6 3 0 27 19 1 35 chain 22662 chr7 159138663 + 66816477 66816776 THE1D-int 1627 - 0 305 117264 31 3 10 163 1 0 4 0 1 40 1 0 56 chain 12019 chr7 159138663 + 66822770 66822918 MER61E 571 - 410 571 152125 63 0 13 85 chain 25726 chr7 159138663 + 66825294 66825632 LTR9 672 + 0 339 101188 54 13 14 271 chain 3535 chr7 159138663 + 66829294 66829336 LTR12C 1709 - 549 591 214789 42 chain 33154 chr7 159138663 + 66838664 66839045 L1PA6 6164 - 2 382 78982 376 1 0 4 chain 24132 chr7 159138663 + 66839090 66839393 AluSp 311 - 9 311 109574 151 15 14 137 chain 16428 chr7 159138663 + 66855553 66855753 AluSp 311 + 20 218 137123 112 2 0 86 chain 4117 chr7 159138663 + 66864546 66864594 tRNA-Trp-TGG 72 - 0 48 205689 48 chain 18032 chr7 159138663 + 66864733 66865077 L1PB1 5432 - 10 323 132773 8 0 2 8 1 0 13 1 0 21 1 0 24 2 0 13 15 12 24 12 1 15 1 0 45 1 0 15 2 1 53 2 0 8 6 2 11 1 0 12 1 0 20 3 0 5 chain 30237 chr7 159138663 + 66875985 66876765 MLT2A2 560 + 0 560 84093 169 12 11 14 365 38 63 0 98 9 0 11 92 2 1 54 chain 7159 chr7 159138663 + 66881205 66881327 MLT1B 390 - 211 342 176344 24 24 33 74 chain 30916 chr7 159138663 + 66887364 66887873 MER1A 529 - 0 527 82659 54 13 18 122 1 0 95 0 15 128 80 79 16 chain 26204 chr7 159138663 + 66896606 66896964 L1PA8 5853 + 5501 5853 99183 61 1 0 41 4 8 68 1 0 9 1 0 36 0 1 18 8 0 17 1 0 86 0 1 6 chain 32753 chr7 159138663 + 66905110 66905547 MER4A1 472 - 14 472 79610 183 21 42 233 chain 4339 chr7 159138663 + 66907865 66907918 MSTC 436 + 381 434 202722 53 chain 23899 chr7 159138663 + 66955400 66955814 MSTA 426 + 0 421 110914 130 24 22 49 40 44 35 21 22 90 0 4 25 chain 14113 chr7 159138663 + 66959469 66959663 MER30 238 + 36 238 144167 69 8 18 5 2 0 110 chain 12120 chr7 159138663 + 66963780 66963961 L1PA15 4387 + 3827 4006 151739 64 18 17 24 1 0 74 chain 24580 chr7 159138663 + 66974085 66974411 LTR9 672 - 336 660 107081 247 11 7 35 4 6 29 chain 3474 chr7 159138663 + 66975071 66975131 L1MA4 2864 - 60 118 215746 38 8 6 14 chain 44376 chr7 159138663 + 66981810 66982349 MER41A 554 + 13 554 63721 295 0 1 98 0 1 146 chain 35055 chr7 159138663 + 66984846 66985368 MER4D 903 + 387 903 76108 24 2 1 177 0 1 73 55 50 182 1 0 8 chain 43247 chr7 159138663 + 66986200 66986732 MER41A 554 + 21 554 65121 18 0 1 514 chain 39565 chr7 159138663 + 66989971 66990446 LTR2 463 + 0 463 69940 174 18 6 283 chain 27668 chr7 159138663 + 66993433 66993786 THE1A 353 - 0 353 94157 243 1 0 83 0 1 26 chain 128312 chr7 159138663 + 66993786 66995376 THE1A-int 1579 - 0 1579 28491 199 14 1 922 1 0 337 1 0 26 8 10 67 3 5 12 chain 27336 chr7 159138663 + 66995376 66995730 THE1A 353 - 0 353 95156 51 1 0 192 1 0 84 1 2 24 chain 26807 chr7 159138663 + 67000997 67001366 L1PA8 5853 - 10 371 96946 83 1 0 19 2 1 35 18 17 9 1 0 71 3 1 43 1 0 50 1 0 32 chain 4315 chr7 159138663 + 67018132 67018209 MADE1 96 + 0 91 203021 20 17 31 40 chain 39738 chr7 159138663 + 67026762 67027276 MER41C 542 + 10 542 69703 39 0 1 181 0 3 77 6 7 93 5 1 15 3 20 95 chain 47716 chr7 159138663 + 67032068 67032659 LTR71B 605 - 0 605 60678 44 1 0 409 4 18 6 0 1 127 chain 43419 chr7 159138663 + 67033679 67034206 MER41A 554 - 26 554 64910 97 1 2 106 1 0 4 0 1 318 chain 7629 chr7 159138663 + 67038730 67038845 LTR19B 566 + 440 556 173360 73 10 11 32 chain 15793 chr7 159138663 + 67038927 67039142 L1PA8 5853 + 5636 5848 138973 43 1 0 14 7 6 45 1 0 16 1 0 55 0 1 32 chain 37655 chr7 159138663 + 67039161 67039664 LTR19B 566 + 64 566 72615 96 19 13 184 2 1 10 0 1 144 0 1 33 0 4 15 chain 38703 chr7 159138663 + 67046178 67046680 MER41C 542 - 0 527 71147 200 10 31 115 0 3 143 0 1 34 chain 44967 chr7 159138663 + 67049495 67050044 MER41A 554 + 0 554 63094 43 0 4 492 1 2 13 chain 24644 chr7 159138663 + 67105797 67106157 THE1B 368 + 0 368 106761 168 1 0 30 35 45 68 2 1 56 chain 24086 chr7 159138663 + 67108374 67108671 AluSc8 310 + 5 306 109826 126 0 4 171 chain 12100 chr7 159138663 + 67110957 67111102 MER51E 476 - 313 460 151799 31 0 2 114 chain 37449 chr7 159138663 + 67112095 67112632 MLT2A2 560 - 9 560 72892 18 1 11 105 12 18 187 7 6 25 14 13 168 chain 45676 chr7 159138663 + 67128782 67129336 LTR19B 566 - 11 566 62333 34 7 8 513 chain 9197 chr7 159138663 + 67146150 67146251 L1PA6 6164 + 6061 6162 164569 101 chain 39957 chr7 159138663 + 67156686 67157216 MER41A 554 - 0 554 69383 15 6 12 127 10 12 71 2 0 83 4 22 212 chain 38099 chr7 159138663 + 67183397 67183868 MER4A1 472 + 0 472 71986 379 0 1 92 chain 41608 chr7 159138663 + 67185129 67185750 MER41B 635 + 0 635 67142 118 11 12 256 1 7 61 27 28 42 37 43 68 chain 57897 chr7 159138663 + 67187733 67188473 MER4E1 777 + 0 760 54039 155 13 20 17 0 1 123 0 2 120 0 5 99 13 14 52 0 4 148 chain 47081 chr7 159138663 + 67189512 67190127 PABL_B 668 + 5 643 61139 13 0 25 194 1 0 44 1 0 69 2 1 285 0 1 6 chain 12208 chr7 159138663 + 67193402 67193569 L1PB2 3958 - 120 285 151385 63 2 1 95 1 0 6 chain 23459 chr7 159138663 + 67215758 67216104 THE1B 368 - 13 368 113325 112 35 45 30 1 0 168 chain 56989 chr7 159138663 + 67242892 67243562 L1PA7 6471 - 2 673 54534 11 0 1 659 chain 9432 chr7 159138663 + 67245501 67245628 L1PA11 4918 + 4365 4487 163397 30 1 0 12 2 0 67 2 0 13 chain 10411 chr7 159138663 + 67264155 67264297 MER30B 195 + 22 189 158640 71 0 20 26 0 1 6 1 4 29 0 1 9 chain 42807 chr7 159138663 + 67265715 67266202 L1PA7 6471 + 5968 6455 65646 487 chain 5568 chr7 159138663 + 67281360 67281438 MLT1B 390 - 41 121 189395 35 1 3 42 chain 7263 chr7 159138663 + 67282310 67282399 MLT1B 390 - 39 128 175701 89 chain 9719 chr7 159138663 + 67292354 67292477 MER50 708 + 563 686 161988 6 0 1 59 1 0 57 chain 10988 chr7 159138663 + 67303595 67303719 AluSp 311 + 62 186 156239 124 chain 38876 chr7 159138663 + 67315233 67315666 L1PA4 6152 - 1 435 70906 146 1 2 286 chain 3697 chr7 159138663 + 67334490 67334554 MER58B 340 + 265 330 211984 16 8 9 40 chain 3531 chr7 159138663 + 67346591 67346631 LTR5B 1012 - 972 1012 214851 40 chain 22630 chr7 159138663 + 67347038 67347328 AluSp 311 + 5 292 117423 144 2 1 134 2 0 8 chain 3771 chr7 159138663 + 67354338 67354448 SVA_F 1814 + 823 1094 210801 16 29 193 24 13 10 28 chain 18608 chr7 159138663 + 67361115 67361533 L1PB1 5432 - 12 401 131198 16 1 0 13 1 0 21 1 0 8 0 1 4 71 56 5 3 0 16 1 0 34 10 13 12 2 1 53 2 0 9 6 2 9 1 0 33 3 0 7 5 4 4 0 1 67 chain 19038 chr7 159138663 + 67367847 67368182 THE1B 368 - 13 368 130006 43 7 6 64 16 28 12 0 1 6 35 28 32 9 24 111 chain 42242 chr7 159138663 + 67372700 67373241 LTR66 600 - 22 600 66344 15 1 3 55 0 32 16 0 1 55 0 2 399 chain 45005 chr7 159138663 + 67379258 67379810 MER41A 554 + 0 554 63055 211 5 6 210 0 1 126 chain 9285 chr7 159138663 + 67394664 67394886 MER30 238 + 0 235 164144 15 0 40 9 45 4 5 0 1 33 3 0 12 15 34 36 4 1 45 chain 37954 chr7 159138663 + 67402959 67403456 LTR3B_ 500 + 0 497 72205 78 1 0 72 0 1 4 8 7 135 1 3 8 3 0 98 1 3 88 chain 10169 chr7 159138663 + 67403633 67403758 AluSz6 309 + 8 133 159758 125 chain 42407 chr7 159138663 + 67404115 67404600 L1PA4 6152 + 5658 6143 66139 485 chain 6885 chr7 159138663 + 67428274 67428355 MER4E1 777 - 249 330 178318 81 chain 60956 chr7 159138663 + 67433778 67434552 LTR12 884 + 0 869 52354 25 1 0 230 0 91 32 2 0 379 0 8 5 1 0 99 chain 11265 chr7 159138663 + 67439152 67439349 LTR43B 570 - 255 461 155173 7 0 6 125 42 45 23 chain 53399 chr7 159138663 + 67445016 67445706 L1PA8 5853 - 12 698 56760 80 2 1 21 1 0 50 2 1 6 1 0 74 2 0 44 1 0 43 0 1 86 1 3 276 chain 16479 chr7 159138663 + 67445967 67446313 MER4A1 472 - 12 367 136984 56 3 5 48 3 4 49 109 115 78 chain 22297 chr7 159138663 + 67460359 67460635 AluY 311 + 10 286 118919 133 3 0 7 0 3 133 chain 6154 chr7 159138663 + 67467833 67467965 MER1A 529 - 9 131 183948 19 48 38 65 chain 20740 chr7 159138663 + 67498923 67499258 THE1B 368 - 29 368 124818 78 66 71 21 1 0 169 chain 8839 chr7 159138663 + 67507199 67507301 MLT2A2 560 + 3 105 166440 102 chain 40923 chr7 159138663 + 67508546 67509105 MLT2A2 560 + 0 560 68005 191 39 36 258 0 3 17 0 1 54 chain 11753 chr7 159138663 + 67509567 67509732 MER1A 529 - 16 185 153251 47 10 14 108 chain 21665 chr7 159138663 + 67522504 67522781 AluSp 311 + 11 299 121521 25 2 0 157 7 20 86 chain 4295 chr7 159138663 + 67527081 67527142 LTR56 451 + 20 80 203299 13 2 1 46 chain 13817 chr7 159138663 + 67527512 67527686 L1PA16 3655 + 3423 3594 145193 153 3 0 18 chain 8734 chr7 159138663 + 67542812 67542913 MSTA 426 - 318 419 167004 101 chain 5957 chr7 159138663 + 67547065 67547640 SVA_F 1814 + 437 763 185622 35 460 133 22 2 0 29 5 85 22 chain 3622 chr7 159138663 + 67547103 67547159 SVA_F 1814 + 629 686 213308 32 7 8 17 chain 98403 chr7 159138663 + 67547879 67549247 SVA_A 1864 + 422 1864 37194 19 1 0 51 39 0 37 1 4 7 0 37 88 0 40 58 1 0 69 10 45 9 1 0 79 1 78 52 3 0 49 1 0 22 4 1 115 2 0 28 6 7 7 3 0 3 65 0 537 chain 130590 chr7 159138663 + 67554374 67555965 LTR12C 1709 - 0 1709 27946 471 0 1 9 0 4 77 1 0 30 3 1 5 1 0 263 0 118 416 1 0 4 0 1 201 5 4 104 chain 43648 chr7 159138663 + 67557668 67558236 L1PA8 5853 - 0 579 64630 14 1 0 78 2 1 19 2 1 7 0 4 27 0 13 10 2 1 70 2 0 46 1 0 167 0 1 120 chain 13401 chr7 159138663 + 67560561 67560727 L1PA8 5853 + 5577 5739 146708 32 2 0 73 1 0 9 1 0 48 chain 86425 chr7 159138663 + 67568739 67569752 LTR5A 1029 - 0 1029 40996 253 9 11 533 0 1 84 0 13 134 chain 6644 chr7 159138663 + 67574630 67574712 MSTB 430 + 2 84 180135 82 chain 7305 chr7 159138663 + 67577548 67577656 MLT1D 503 - 389 501 175403 7 1 0 21 1 2 5 1 0 40 0 5 32 chain 23704 chr7 159138663 + 67588936 67589294 THE1B 368 + 0 368 112012 15 2 0 24 1 6 29 8 9 24 0 5 5 0 1 54 2 1 18 5 1 55 0 6 40 1 0 75 chain 25593 chr7 159138663 + 67592634 67593000 THE1B 368 - 0 368 101763 130 1 0 8 19 22 7 0 3 6 3 1 18 1 0 173 chain 20326 chr7 159138663 + 67652171 67652453 AluSp 311 + 5 284 126156 191 7 11 28 19 12 37 chain 45867 chr7 159138663 + 67657059 67657630 L1PA8 5853 + 5286 5853 62160 194 0 1 54 0 1 28 1 0 44 2 0 70 2 1 61 2 1 19 1 0 93 chain 105109 chr7 159138663 + 67695852 67697167 LTR12C 1709 + 0 1709 35473 9 2 0 206 0 18 163 7 5 35 0 1 213 0 278 184 1 0 4 4 2 106 0 4 211 0 101 153 2 1 15 chain 41959 chr7 159138663 + 67730715 67731291 LTR10A 586 + 0 586 66675 144 2 1 34 2 3 20 11 12 50 0 10 7 1 2 220 8 6 77 chain 23232 chr7 159138663 + 67734804 67735151 THE1B 368 - 15 368 114533 39 6 7 77 1 0 13 30 37 4 1 0 176 chain 59470 chr7 159138663 + 67753785 67754866 MER4E1 777 + 0 769 53130 25 0 2 62 331 0 451 2 10 24 0 9 186 chain 6155 chr7 159138663 + 67755825 67755905 MLT2B2 565 - 429 506 183942 5 3 0 72 chain 23936 chr7 159138663 + 67776012 67779859 LTR9 672 - 98 672 110713 26 2 1 8 2 0 10 34 28 99 36 78 60 5 4 58 8 8 17 3302 0 99 34 31 47 chain 6045 chr7 159138663 + 67776380 67776461 LTR9 672 - 497 573 184850 69 5 0 7 chain 9560 chr7 159138663 + 67778901 67779046 MER51B 395 - 263 395 162779 94 21 8 30 chain 64777 chr7 159138663 + 67788713 67789495 LTR17 781 + 0 773 50670 299 10 0 27 1 2 445 chain 3084 chr7 159138663 + 67794617 67794653 LTR34 700 + 589 625 223245 36 chain 26541 chr7 159138663 + 67831509 67831863 L1PA8 5853 - 0 347 97875 93 1 0 19 2 1 51 1 0 10 4 3 68 2 0 44 1 0 58 chain 14992 chr7 159138663 + 67832208 67832435 L1PB2 3958 - 120 343 141344 63 1 0 21 10 8 63 6 5 63 chain 25890 chr7 159138663 + 67833259 67833620 THE1D 372 + 0 372 100483 160 1 3 9 18 27 173 chain 33654 chr7 159138663 + 67837832 67838736 L1PB1 5432 - 5 565 78162 5 2 0 18 1 0 12 1 0 22 1 0 20 16 14 4 1 0 5 2 0 10 0 2 18 14 2 15 1 0 19 6 0 25 21 19 50 2 0 8 5 1 12 1 0 8 1 0 21 3 0 9 2 5 43 307 0 193 chain 13259 chr7 159138663 + 67852028 67852197 LTR66 600 - 0 186 147249 145 1 18 23 chain 4685 chr7 159138663 + 67859233 67859292 L1PB1 5432 + 5346 5403 198690 24 1 0 21 1 0 12 chain 34148 chr7 159138663 + 67859908 67861309 L1PB1 5432 + 4819 5416 77416 280 788 0 15 1 0 20 1 0 13 1 0 9 2 0 3 2 0 8 2 0 45 14 13 11 1 0 41 7 6 13 3 0 6 54 64 8 9 0 17 1 0 13 1 0 12 chain 16840 chr7 159138663 + 67872630 67872869 MER41B 635 + 10 250 136016 91 0 1 26 1 2 49 16 15 56 chain 5403 chr7 159138663 + 67874038 67874101 MER41B 635 - 385 448 190965 63 chain 7848 chr7 159138663 + 67875472 67875568 MER30 238 + 0 96 172014 96 chain 46067 chr7 159138663 + 67875568 67876122 MER41A 554 - 0 554 61979 554 chain 19053 chr7 159138663 + 67892995 67893265 AluSc 308 + 29 306 129958 99 10 0 109 16 33 36 chain 23568 chr7 159138663 + 67893782 67894072 AluSq2 311 + 11 298 112759 123 1 0 154 2 0 10 chain 38045 chr7 159138663 + 67897931 67898478 MLT2A2 560 + 0 560 72067 37 0 1 200 6 7 154 3 14 71 14 0 7 14 28 41 chain 8325 chr7 159138663 + 67916767 67916889 MER44A 345 - 85 208 169254 14 7 8 101 chain 25208 chr7 159138663 + 67918899 67919202 MER41C 542 + 0 304 103697 49 0 1 254 chain 44699 chr7 159138663 + 67920842 67921393 MER41A 554 - 0 554 63378 15 4 5 83 0 1 410 0 1 39 chain 23804 chr7 159138663 + 67925020 67925356 THE1A 353 - 24 353 111457 204 25 18 11 1 0 48 0 1 47 chain 27499 chr7 159138663 + 67947245 67947611 THE1B 368 + 0 368 94655 13 2 0 27 0 5 127 10 9 187 chain 3012 chr7 159138663 + 67957992 67958029 MER5A1 166 - 19 57 224781 19 0 1 18 chain 42491 chr7 159138663 + 67989692 67990622 MER41A 554 - 1 554 66024 45 392 14 183 6 7 304 chain 29568 chr7 159138663 + 67989746 67990114 L1PA7 6471 - 7 384 86337 225 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1 51 3 0 87 chain 16557 chr7 159138663 + 68098130 68098793 MER4D1 891 - 529 887 136775 58 33 9 17 370 80 30 6 4 92 7 18 50 chain 97325 chr7 159138663 + 68116718 68117771 L1PA2 6032 - 0 1053 37476 1053 chain 44215 chr7 159138663 + 68117771 68118260 L1P1 4361 + 3613 4102 63816 489 chain 5515 chr7 159138663 + 68122542 68122613 MSTA 426 - 0 72 189886 19 0 1 52 chain 18674 chr7 159138663 + 68138268 68138502 LTR8 732 + 31 265 131018 234 chain 5005 chr7 159138663 + 68154200 68154259 MER51A 677 - 419 478 195091 59 chain 43288 chr7 159138663 + 68157629 68158172 MER41A 554 + 0 543 65068 82 11 12 269 1 0 180 chain 29697 chr7 159138663 + 68163755 68164208 MLT2A1 477 + 0 477 85843 37 0 1 46 1 0 84 5 2 10 1 2 13 4 5 37 1 0 147 30 56 37 chain 7683 chr7 159138663 + 68164410 68164504 MER5A 189 - 40 133 173028 33 1 0 60 chain 21309 chr7 159138663 + 68165267 68165692 MER65C 458 - 47 432 122832 96 3 0 16 83 34 21 1 0 48 16 12 89 9 26 43 chain 42768 chr7 159138663 + 68192512 68193231 L1MA3 4352 + 3633 4305 65692 48 13 15 203 1 0 40 0 1 108 1 3 20 93 50 113 5 1 25 2 0 22 2 1 5 1 0 17 chain 28980 chr7 159138663 + 68225723 68226174 MLT2A2 560 - 0 560 89092 142 7 116 22 0 1 46 65 64 169 chain 23574 chr7 159138663 + 68236934 68237208 AluY 311 + 26 301 112712 105 1 2 168 chain 5054 chr7 159138663 + 68240915 68240975 L1MB2 1706 + 1356 1416 194590 60 chain 9675 chr7 159138663 + 68265490 68265607 LTR39 781 - 618 739 162217 97 0 4 20 chain 44952 chr7 159138663 + 68277650 68278161 MER9a3 513 - 1 513 63116 498 0 1 13 chain 18538 chr7 159138663 + 68285151 68285423 MER1A 529 - 0 269 131394 13 10 9 46 10 8 193 chain 33732 chr7 159138663 + 68289286 68289762 LTR15 485 - 0 485 78041 19 0 11 20 4 0 89 3 0 3 1 0 60 1 5 145 7 0 25 0 1 25 12 18 38 0 2 24 chain 17799 chr7 159138663 + 68292054 68292433 L1PB1 5432 - 41 391 133407 18 8 7 20 2 0 14 1 0 5 2 0 12 17 8 11 2 0 16 1 0 44 21 19 50 2 0 6 6 3 12 1 0 12 1 0 20 13 11 62 chain 23983 chr7 159138663 + 68307653 68307935 AluSp 311 + 0 289 110426 50 0 7 232 chain 15381 chr7 159138663 + 68312931 68313597 MSTA 426 + 0 404 140257 56 16 15 23 20 45 54 381 74 26 2 23 88 chain 6305 chr7 159138663 + 68324071 68324140 L1PA5 6144 + 6052 6121 182749 69 chain 59918 chr7 159138663 + 68331537 68332291 MER4E1 777 + 0 767 52864 15 5 6 252 1 4 262 17 12 111 0 14 91 chain 4672 chr7 159138663 + 68332642 68332703 LTR8A 794 - 0 59 198848 38 2 0 21 chain 9250 chr7 159138663 + 68343504 68343613 L1PA6 6164 - 12 121 164304 109 chain 7080 chr7 159138663 + 68345086 68345192 HERVL-int 5654 + 5200 5306 176891 13 14 14 79 chain 112016 chr7 159138663 + 68367047 68368470 THE1A-int 1579 + 0 1570 33660 21 1 33 558 0 1 23 9 12 4 1 0 4 0 1 163 5 118 337 0 1 163 4 0 81 0 1 49 chain 27837 chr7 159138663 + 68368479 68368834 THE1A 353 + 0 353 93571 15 2 0 33 0 1 45 1 0 259 chain 17830 chr7 159138663 + 68412169 68412526 THE1B 368 + 0 368 133302 24 1 0 22 0 6 16 17 18 20 24 25 38 5 4 25 9 16 11 26 24 119 chain 46707 chr7 159138663 + 68446929 68447490 LTR10C 591 + 0 563 61450 80 1 0 114 1 2 313 1 3 51 chain 44922 chr7 159138663 + 68448732 68449280 MER41A 554 + 0 554 63150 111 0 1 357 7 12 73 chain 28997 chr7 159138663 + 68462083 68462396 AluYa5 310 + 0 310 89001 132 3 0 178 chain 6072 chr7 159138663 + 68478174 68478256 MLT2B2 565 - 2 107 184640 44 0 24 4 1 0 33 chain 50747 chr7 159138663 + 68487559 68488215 L1PA8 5853 - 0 658 58467 93 1 0 15 2 1 48 9 8 6 1 0 62 2 12 46 1 0 228 8 5 134 chain 29045 chr7 159138663 + 68498177 68499484 L1PB1 5432 + 4919 5420 88783 45 7 5 128 794 17 24 1 0 9 1 0 9 10 6 6 2 0 9 0 2 41 2 1 15 1 0 44 1 0 16 15 2 29 2 0 5 1 0 14 2 0 24 1 0 21 2 0 9 1 4 16 chain 15715 chr7 159138663 + 68516410 68516774 THE1B 368 - 0 368 139226 39 39 38 49 10 18 10 42 38 59 34 35 82 chain 27223 chr7 159138663 + 68525012 68525462 MER4A1 472 - 0 471 95518 193 65 85 60 10 9 38 0 1 53 1 0 16 0 2 14 chain 129158 chr7 159138663 + 68527788 68529182 L1PA3long 6157 + 4763 6157 28276 1394 chain 11435 chr7 159138663 + 68533772 68533935 THE1D 372 + 4 169 154546 69 12 13 74 0 1 8 chain 13506 chr7 159138663 + 68550064 68550231 L1PA8 5853 + 5688 5853 146342 52 2 1 19 1 0 93 chain 10343 chr7 159138663 + 68569660 68569800 L1P4 1494 - 104 243 158929 40 2 1 98 chain 41792 chr7 159138663 + 68570810 68572412 MER4D 903 + 228 894 66909 289 18 33 17 5 3 32 0 1 35 46 47 24 960 9 176 chain 40037 chr7 159138663 + 68612943 68613818 MER41A 554 - 0 554 69265 36 8 0 45 365 51 99 0 1 322 chain 17899 chr7 159138663 + 68617077 68617448 L1PB1 5432 + 5083 5420 133103 20 3 0 11 1 0 22 1 0 11 1 0 11 5 1 8 2 0 53 2 1 16 1 0 43 1 0 16 4 0 4 8 0 27 2 0 5 6 5 9 2 0 18 0 1 5 31 29 5 1 0 16 chain 15096 chr7 159138663 + 68624513 68624771 AluJr 308 + 10 269 141047 92 53 56 12 2 0 99 chain 59095 chr7 159138663 + 68630846 68631831 MER4E1 777 - 0 777 53334 36 0 2 52 3 1 144 209 0 95 1 0 4 1 2 164 1 4 248 5 0 9 0 3 13 chain 8254 chr7 159138663 + 68677338 68677439 MER1B 344 + 153 251 169658 68 3 0 30 chain 3910 chr7 159138663 + 68685706 68685784 MER1A 529 - 384 485 208704 23 1 2 23 12 34 19 chain 23094 chr7 159138663 + 68709265 68709655 L1PA17 2846 - 153 526 115172 43 1 0 15 6 5 19 34 33 45 2 1 12 11 2 16 4 0 182 chain 7816 chr7 159138663 + 68745737 68745833 LTR29 598 + 462 558 172207 96 chain 24922 chr7 159138663 + 68746251 68746608 THE1B 368 + 0 368 105213 169 1 0 32 0 1 12 17 29 63 7 6 56 chain 29891 chr7 159138663 + 68760361 68760735 MLT2A1 477 - 5 477 85125 45 0 93 160 1 5 28 5 6 135 chain 23865 chr7 159138663 + 68770001 68770376 THE1D 372 + 0 372 111108 56 10 1 115 20 22 27 13 18 101 1 0 32 chain 33473 chr7 159138663 + 68778318 68779104 MER1A 529 - 0 470 78454 15 4 0 43 18 19 46 316 3 306 17 17 21 chain 22800 chr7 159138663 + 68785824 68786123 AluSp 311 + 9 304 116575 48 1 8 55 11 0 184 chain 19997 chr7 159138663 + 68795317 68795558 MER9a1 513 + 0 265 127153 24 0 23 210 0 1 7 chain 34671 chr7 159138663 + 68802320 68803091 MER4A1 472 + 0 470 76664 171 0 3 39 0 18 185 322 0 54 chain 12345 chr7 159138663 + 68826514 68826677 THE1B 368 + 0 164 150847 105 4 5 54 chain 9476 chr7 159138663 + 68827787 68827907 L1PB2 3958 + 3719 3838 163185 56 1 0 63 chain 20567 chr7 159138663 + 68832278 68832521 AluSp 311 + 50 293 125402 243 chain 90286 chr7 159138663 + 68840114 68841112 L1PA4 6152 - 372 1371 39541 346 0 1 652 chain 34045 chr7 159138663 + 68841112 68841486 L1PA4 6152 + 5778 6152 77556 374 chain 113909 chr7 159138663 + 68858633 68860014 LTR12C 1709 + 0 1709 33118 265 0 2 170 0 1 289 3 321 27 0 2 35 1 0 4 4 2 106 0 4 337 0 4 140 chain 4397 chr7 159138663 + 68861914 68862002 MER5A 189 - 83 169 201971 21 5 6 38 10 7 14 chain 33225 chr7 159138663 + 68868724 68869271 L1PB1 5432 + 4903 5420 78839 199 14 12 24 1 0 8 1 0 10 10 6 6 2 0 52 2 1 16 1 0 43 1 0 12 29 16 19 2 0 5 1 0 14 2 0 23 2 1 20 0 3 11 1 0 16 chain 7695 chr7 159138663 + 68890504 68890591 MER44A 345 - 111 198 172966 87 chain 35987 chr7 159138663 + 68897144 68897602 LTR3B_ 500 - 10 488 74914 5 0 2 131 6 4 49 0 20 267 chain 3964 chr7 159138663 + 68931023 68931090 MER21B 843 - 774 843 207926 25 9 11 33 chain 6385 chr7 159138663 + 68931527 68931606 MER21B 843 - 764 843 182142 79 chain 6013 chr7 159138663 + 68944905 68944985 MADE1 96 + 0 95 185106 36 0 15 44 chain 10783 chr7 159138663 + 68945216 68945380 MER4A1 472 - 10 208 157062 58 11 13 74 1 33 20 chain 54286 chr7 159138663 + 68947412 68948149 LTR17 781 + 0 757 56175 53 6 3 123 1 0 148 1 0 248 9 12 119 13 35 16 chain 19986 chr7 159138663 + 68964461 68964750 THE1B 368 + 0 306 127187 108 5 6 50 0 11 15 7 10 9 1 5 16 1 0 10 1 0 66 chain 8426 chr7 159138663 + 68996897 68997000 MLT2B2 565 - 454 558 168706 33 0 1 70 chain 3305 chr7 159138663 + 69005442 69005482 MER51A 677 - 416 456 218892 40 chain 24083 chr7 159138663 + 69059339 69059656 L1PA8 5853 - 0 310 109852 93 1 0 17 7 6 48 1 0 10 2 1 70 2 0 44 1 0 21 chain 29486 chr7 159138663 + 69076634 69076943 AluYb8 318 + 0 309 86681 309 chain 19090 chr7 159138663 + 69125656 69125905 AluY 311 + 20 268 129844 111 14 12 48 0 1 76 chain 47527 chr7 159138663 + 69251055 69251659 LTR12 884 + 0 634 60823 25 1 0 299 0 25 25 7 6 127 0 7 120 chain 106210 chr7 159138663 + 69293947 69295391 L1PA8 5853 + 4414 5853 35207 371 1 0 142 0 1 8 0 4 68 7 9 142 1 0 318 0 1 86 1 0 43 3 1 24 65 66 42 2 1 19 1 0 45 13 6 42 chain 3516 chr7 159138663 + 69353855 69353901 MSTB1 431 - 368 417 215127 13 0 3 33 chain 5587 chr7 159138663 + 69492454 69492522 MER5A 189 + 0 68 189208 68 chain 16756 chr7 159138663 + 69565430 69565630 L1PA6 6164 - 13 213 136243 200 chain 14730 chr7 159138663 + 69589259 69589547 L1PA14 3548 - 63 334 142171 10 1 0 10 1 0 9 6 0 36 6 5 17 1 0 5 20 17 34 4 0 7 12 11 47 0 2 54 1 0 7 chain 20736 chr7 159138663 + 69638093 69638361 AluY 311 + 11 297 124830 121 0 1 6 7 4 7 0 3 11 0 17 116 chain 567893 chr7 159138663 + 69662314 69668343 L1HS 6032 + 0 6032 33 888 0 1 4856 0 2 285 chain 19886 chr7 159138663 + 69740570 69740943 THE1C 375 + 0 375 127530 29 5 0 6 0 5 39 12 13 50 18 22 17 46 43 151 chain 8129 chr7 159138663 + 69747175 69747283 MLT1A0-int 1658 - 1536 1639 170343 65 6 0 14 0 1 23 chain 3781 chr7 159138663 + 69748373 69748509 MER104 178 - 41 175 210650 21 48 46 26 10 0 9 2 12 20 chain 11552 chr7 159138663 + 69765123 69765300 MER30 238 - 0 187 154094 107 22 30 32 0 2 16 chain 51073 chr7 159138663 + 69795945 69796561 L1PA7 6471 - 2412 3019 58269 335 0 1 178 1 0 22 1 0 20 8 0 51 chain 201366 chr7 159138663 + 69796561 69798955 L1PA7 6471 + 4063 6466 19113 29 0 1 250 1 7 107 0 1 29 1 2 716 1 0 265 0 1 146 1 4 79 1 4 750 6 0 12 chain 25944 chr7 159138663 + 69813508 69813821 AluY 311 + 0 307 100233 123 1 0 3 4 0 81 1 0 100 chain 11704 chr7 159138663 + 69828324 69828453 L1HS 6032 + 5903 6032 153447 129 chain 28191 chr7 159138663 + 69895814 69896122 AluYa5 310 - 4 310 92339 174 2 0 132 chain 29433 chr7 159138663 + 69949815 69950253 L1PB2 3958 + 3409 3838 86927 17 0 1 12 2 0 12 4 0 94 1 0 72 1 0 64 2 1 48 0 3 12 4 3 8 2 0 5 3 0 5 7 9 63 chain 25176 chr7 159138663 + 70218860 70219150 AluY 311 + 0 286 103863 126 4 0 160 chain 6437 chr7 159138663 + 70274556 70274664 MER21C 908 - 726 868 181730 43 16 50 49 chain 56472 chr7 159138663 + 70276221 70276919 L1P1 4361 - 20 714 54866 12 2 1 23 1 0 157 1 0 18 0 1 36 2 0 258 6 4 147 0 2 35 chain 32502 chr7 159138663 + 70276927 70277303 L1PA5 6144 + 5755 6131 80020 376 chain 9759 chr7 159138663 + 70281638 70281766 L1MA9 1812 + 387 514 161796 46 1 0 81 chain 4899 chr7 159138663 + 70287198 70287419 L1PB1 5432 + 4771 4992 77710 221 chain 62842 chr7 159138663 + 70287420 70288226 LTR12 884 + 0 884 51518 18 0 13 203 0 70 37 4 3 21 2 1 12 2 0 331 1 0 175 chain 7493 chr7 159138663 + 70288391 70288729 L1PB1 5432 + 5114 5420 77710 24 1 0 8 1 0 12 7 3 6 2 0 52 7 6 11 1 0 39 47 33 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 9651 chr7 159138663 + 70288754 70288908 L1MA7 2200 + 1787 1943 162342 42 1 0 31 0 1 4 20 22 56 chain 8791 chr7 159138663 + 70297612 70297830 L1MB7 1623 - 356 550 166693 19 44 27 12 1 0 5 29 21 10 0 3 27 1 0 70 chain 28820 chr7 159138663 + 70298197 70298503 AluYb8 318 - 11 317 89802 306 chain 513930 chr7 159138663 + 70303035 70309299 L1PA7 6471 + 5 6470 5785 192 15 14 110 19 189 109 6 7 52 3 4 68 1 0 460 0 4 23 1 0 926 0 4 173 5 4 87 1 2 207 0 1 397 6 5 51 0 1 426 0 2 6 1 2 13 0 4 382 9 13 159 1 0 8 0 3 541 0 1 10 1 0 150 1 5 186 0 1 355 0 1 4 1 0 247 0 3 691 7 9 153 chain 28296 chr7 159138663 + 70325066 70325488 LTR7B 505 + 0 495 91959 108 0 10 66 35 11 17 0 88 62 1 0 23 0 1 55 14 13 41 chain 25031 chr7 159138663 + 70344322 70344685 THE1B 368 - 0 368 104633 49 5 13 70 1 4 32 4 0 26 6 5 61 4 3 105 chain 42359 chr7 159138663 + 70344746 70345346 MER41B 635 + 25 628 66205 66 11 1 36 0 1 149 0 1 110 0 1 32 1 0 85 0 1 7 7 12 22 13 18 61 chain 18889 chr7 159138663 + 70356420 70356677 LTR8 732 + 0 271 130394 15 0 16 11 6 0 102 2 0 12 0 6 109 chain 54392 chr7 159138663 + 70360243 70360936 LTR8 732 - 14 709 56101 70 2 0 53 0 2 273 2 0 255 0 4 38 chain 47115 chr7 159138663 + 70373115 70373761 PABL_A 660 + 0 651 61115 23 7 8 27 4 9 8 5 0 7 5 4 4 0 1 163 1 0 10 2 1 173 3 5 42 0 4 162 chain 56479 chr7 159138663 + 70374038 70374774 MER4E1 777 - 27 777 54861 89 4 0 49 0 4 62 3 0 4 8 0 78 7 8 66 0 17 77 0 1 115 1 0 133 0 4 12 6 9 22 chain 3421 chr7 159138663 + 70397947 70398044 L1MD2 1676 - 1584 1672 216743 22 8 1 22 27 25 18 chain 6901 chr7 159138663 + 70407470 70407650 LTR60 593 + 323 536 178180 29 70 104 14 1 0 38 0 1 4 1 0 23 chain 10449 chr7 159138663 + 70439035 70439156 LTR45C 530 + 374 495 158496 121 chain 4865 chr7 159138663 + 70448814 70448881 L1MA4A 3247 - 119 185 196639 21 1 0 45 chain 38744 chr7 159138663 + 70454820 70455367 LTR71B 605 + 2 556 71088 54 8 7 60 13 25 124 1 9 62 15 3 210 chain 28064 chr7 159138663 + 70463807 70464185 THE1C 375 + 0 375 92776 180 0 1 4 12 10 43 1 0 111 1 0 26 chain 44116 chr7 159138663 + 70466949 70467497 MLT2A2 560 + 0 560 64065 132 12 13 254 3 14 147 chain 34535 chr7 159138663 + 70482252 70483114 MER4A1 472 + 0 472 76855 151 0 1 69 10 31 118 412 0 102 chain 32492 chr7 159138663 + 70482624 70483012 MER48 407 + 19 407 80042 388 chain 3566 chr7 159138663 + 70488711 70488776 L1MA3 4352 - 50 111 214193 12 10 8 23 2 0 18 chain 9415 chr7 159138663 + 70494492 70494613 MER30 238 - 0 117 163484 111 4 0 6 chain 31547 chr7 159138663 + 70495175 70495562 MLT2A1 477 + 0 393 81574 142 0 1 25 1 5 32 0 1 187 chain 5609 chr7 159138663 + 70497119 70497196 L1PB1 5432 - 10 84 188987 18 1 0 13 1 0 21 1 0 22 chain 42767 chr7 159138663 + 70497203 70497840 L1PB1 5432 + 4672 5300 65694 36 1 0 90 0 8 162 5 4 128 18 16 21 1 0 10 1 0 11 9 3 7 2 0 52 2 1 15 1 0 45 1 0 7 0 1 7 1 0 4 chain 3959 chr7 159138663 + 70500218 70500266 LTR53 516 + 0 48 207996 48 chain 2739 chr7 159138663 + 70501915 70501961 L1MB3 1562 - 15 60 229624 18 6 5 22 chain 131268 chr7 159138663 + 70502400 70503948 LTR12C 1709 + 0 1709 27804 30 0 2 119 2 1 114 7 8 300 5 4 121 0 159 254 1 0 5 3 1 106 0 4 481 chain 4993 chr7 159138663 + 70504835 70504892 MSTC 436 + 379 436 195214 57 chain 11383 chr7 159138663 + 70508576 70509092 MER30 238 - 3 238 154770 110 10 0 8 0 18 6 307 0 31 22 0 9 0 40 13 chain 86936 chr7 159138663 + 70517767 70518832 MER11C 1089 - 16 1089 40812 474 7 8 89 0 1 42 0 1 233 7 12 213 chain 3408 chr7 159138663 + 70527762 70527800 L1MB7 1623 + 999 1037 216946 38 chain 4359 chr7 159138663 + 70536861 70536927 Kanga1d 558 + 27 97 202461 51 3 7 12 chain 29782 chr7 159138663 + 70538824 70539166 LTR14A 344 + 0 344 85537 262 1 3 79 chain 15706 chr7 159138663 + 70541748 70541936 L1PA5 6144 + 5954 6143 139244 177 1 2 10 chain 4162 chr7 159138663 + 70542733 70542783 L1MB2 1706 + 891 941 205061 50 chain 29531 chr7 159138663 + 70567077 70567393 AluYb8 318 + 0 313 86527 132 3 0 181 chain 16516 chr7 159138663 + 70574447 70574735 LTR45B 484 + 8 312 136872 73 15 17 10 15 15 30 10 11 75 6 19 54 chain 39411 chr7 159138663 + 70575736 70576302 MER4B 649 - 30 649 70142 19 0 1 37 1 0 25 21 19 160 1 16 23 8 6 114 0 42 157 chain 12049 chr7 159138663 + 70576773 70576919 LTR8 732 + 586 732 151985 146 chain 25611 chr7 159138663 + 70580769 70581063 AluYk4 311 - 16 311 101675 33 0 1 261 chain 8521 chr7 159138663 + 70603326 70603467 Tigger2a 444 - 238 389 168187 28 6 0 7 6 12 38 1 8 48 0 3 7 chain 23344 chr7 159138663 + 70609555 70610674 LTR26 622 - 0 606 113961 165 797 283 126 0 1 31 chain 30270 chr7 159138663 + 70612157 70612577 MLT2A1 477 - 0 477 84016 4 1 0 27 0 10 7 0 46 49 2 1 8 4 3 115 2 3 31 1 4 169 chain 29998 chr7 159138663 + 70639443 70639862 LTR7B 505 - 10 505 84819 41 18 17 51 0 1 23 1 0 82 0 2 26 6 68 69 0 10 8 0 3 94 chain 32691 chr7 159138663 + 70644059 70644507 MER4A1 472 + 0 472 79700 15 26 28 50 0 1 153 7 28 197 chain 23389 chr7 159138663 + 70646884 70647168 AluSp 311 + 5 290 113705 276 0 1 8 chain 65356 chr7 159138663 + 70652741 70653769 L1PB1 5432 - 5 1007 50395 5 2 0 18 1 0 13 9 8 13 1 0 24 2 0 14 8 5 10 17 21 15 1 0 44 6 5 11 2 1 8 1 0 34 5 0 11 16 10 10 1 0 8 2 1 25 1 0 10 1 0 87 0 2 206 6 4 178 2 0 5 1 0 86 1 3 107 chain 42302 chr7 159138663 + 70656806 70657363 MLT2A2 560 - 0 560 66265 61 6 7 79 10 16 4 1 0 22 4 1 370 chain 24633 chr7 159138663 + 70674689 70675319 THE1A 353 - 0 347 106811 74 1 0 98 312 31 40 1 0 104 chain 26600 chr7 159138663 + 70676113 70676475 THE1A 353 + 0 353 97660 109 5 4 81 5 4 26 8 1 128 chain 128605 chr7 159138663 + 70676475 70678038 THE1A-int 1579 + 0 1574 28417 241 0 3 168 1 11 48 0 4 19 1 0 656 2 1 61 1 0 41 7 4 317 chain 26918 chr7 159138663 + 70678043 70678395 THE1A 353 + 0 353 96558 110 1 0 33 0 2 57 1 0 109 6 7 35 chain 25910 chr7 159138663 + 70705641 70705938 AluYf4 310 - 3 299 100376 19 2 0 84 0 1 192 chain 12921 chr7 159138663 + 70716007 70716159 L1PA5 6144 - 1 154 148551 57 0 1 95 chain 5078 chr7 159138663 + 70727966 70728089 MLT1B 390 + 148 263 194314 37 6 4 9 1 0 4 1 0 6 24 21 29 1 0 5 chain 5039 chr7 159138663 + 70749171 70749227 LTR12_ 688 + 621 677 194742 56 chain 29336 chr7 159138663 + 70774848 70775202 THE1B 368 + 0 368 87365 40 0 15 117 1 0 196 chain 5684 chr7 159138663 + 70812274 70812341 MIR 256 + 70 137 188254 67 chain 35193 chr7 159138663 + 70822718 70823203 LTR12F 595 + 0 595 75928 55 8 160 25 42 0 355 chain 23258 chr7 159138663 + 70831289 70831568 AluSc 308 + 0 282 114393 27 0 3 252 chain 23728 chr7 159138663 + 70842613 70842958 THE1D 372 + 0 333 111891 79 19 0 36 13 11 18 0 3 39 1 7 140 chain 4544 chr7 159138663 + 70848322 70848397 MER2 342 - 114 178 200297 56 11 0 8 chain 5334 chr7 159138663 + 70851940 70852169 LTR16C 481 - 8 265 191698 33 1 0 34 144 173 17 chain 6853 chr7 159138663 + 70852172 70852287 MADE1 96 - 0 96 178553 38 14 0 6 6 0 5 0 1 46 chain 5431 chr7 159138663 + 70852840 70852907 LTR16C 481 + 406 473 190701 67 chain 26521 chr7 159138663 + 70864982 70865353 L1PA8 5853 - 0 367 97966 89 5 4 19 2 1 52 1 0 9 2 1 70 2 0 46 1 0 24 0 2 14 0 1 35 chain 12852 chr7 159138663 + 70901035 70901197 LTR8 732 + 571 732 148833 69 1 0 92 chain 48198 chr7 159138663 + 70906466 70907112 L1PA8 5853 - 0 640 60320 48 1 0 44 2 1 19 2 1 36 28 26 70 2 0 25 0 4 15 1 0 166 8 4 5 0 2 174 chain 25268 chr7 159138663 + 70915917 70916201 L1PA5 6144 - 0 284 103377 284 chain 18672 chr7 159138663 + 70918295 70918638 THE1B 368 - 21 368 131026 104 64 68 6 1 0 34 26 27 108 chain 3267 chr7 159138663 + 70920168 70920275 MER72 723 - 437 543 219638 19 15 14 16 1 0 4 30 31 22 chain 41881 chr7 159138663 + 70922354 70922910 MER41A 554 - 0 554 66786 380 27 25 149 chain 53822 chr7 159138663 + 70924440 70925186 MER4E1 777 + 0 759 56466 23 1 0 15 0 4 28 0 7 6 5 0 149 12 10 11 0 1 43 0 1 62 0 2 162 1 0 16 11 18 201 chain 43538 chr7 159138663 + 70925516 70926045 MER41A 554 - 0 528 64754 215 1 0 173 2 1 70 0 1 68 chain 47925 chr7 159138663 + 70928411 70929044 MER41B 635 - 0 635 60539 123 1 0 7 0 1 36 1 0 341 7 8 18 4 5 24 0 1 71 chain 6003 chr7 159138663 + 70948108 70948177 Tigger3 1187 - 289 358 185217 69 chain 5316 chr7 159138663 + 70955339 70955400 LTR32 486 - 410 471 191859 61 chain 23376 chr7 159138663 + 70956995 70957266 AluSc5 308 + 11 283 113782 119 0 1 152 chain 3016 chr7 159138663 + 70996385 70996418 MER3 215 - 127 160 224685 33 chain 12040 chr7 159138663 + 70999604 70999764 THE1C 375 - 214 375 152030 105 5 6 50 chain 8455 chr7 159138663 + 71039045 71039164 L1PA15 4387 - 120 233 168537 50 1 0 10 4 0 22 1 0 31 chain 6087 chr7 159138663 + 71039657 71039727 MER5A 189 + 43 113 184521 70 chain 31280 chr7 159138663 + 71047033 71047938 L1PB1 5432 + 4860 5420 82023 103 1 2 126 327 14 9 3 0 20 1 0 13 1 0 9 17 11 50 21 19 37 37 24 30 24 19 24 1 0 21 1 0 29 chain 30931 chr7 159138663 + 71065767 71066378 L1PB1 5432 - 8 566 82630 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 45 32 4 1 0 16 1 0 9 0 1 33 1 0 16 2 1 53 2 0 6 23 18 5 1 0 24 37 11 39 1 2 10 1 0 5 0 1 68 0 1 12 1 2 97 chain 20558 chr7 159138663 + 71099264 71099909 MER4E 760 - 0 318 125446 182 326 0 40 46 45 51 chain 44968 chr7 159138663 + 71100557 71101090 MER41A 554 - 0 554 63092 109 0 8 9 0 1 19 0 12 396 chain 47802 chr7 159138663 + 71102794 71103419 MER41B 635 - 7 635 60621 70 0 1 383 5 6 41 1 2 125 chain 10358 chr7 159138663 + 71131407 71131723 L1PB1 5432 - 7 308 158871 5 1 0 16 1 0 13 1 0 21 72 57 17 3 0 16 1 0 43 19 17 17 0 17 17 2 0 11 26 20 14 chain 19659 chr7 159138663 + 71150493 71150732 7SK 245 - 6 245 128219 239 chain 22483 chr7 159138663 + 71158945 71159286 THE1B 368 - 2 352 118093 113 45 55 29 1 0 153 chain 39376 chr7 159138663 + 71182683 71183206 LTR2C 499 - 0 496 70207 63 0 1 25 5 4 207 54 27 169 chain 105239 chr7 159138663 + 71202362 71203627 LTR12C 1709 - 0 1709 35442 143 0 13 32 0 102 191 0 4 61 1 326 259 4 3 138 0 1 232 1 2 16 1 0 186 chain 15523 chr7 159138663 + 71208831 71209171 L1PA16 3655 - 733 1048 139817 11 3 4 4 1 0 12 13 4 43 13 14 61 16 0 41 9 7 45 23 24 45 chain 16757 chr7 159138663 + 71211918 71212098 L1HS 6032 - 311 491 136241 180 chain 29838 chr7 159138663 + 71212098 71212418 L1HS 6032 + 5712 6032 85318 320 chain 18879 chr7 159138663 + 71221945 71222302 THE1B 368 + 7 368 130428 101 8 9 44 39 32 7 1 0 8 2 6 10 11 19 63 16 15 47 chain 29306 chr7 159138663 + 71230688 71231092 L1PA16 3655 - 115 518 87542 127 6 9 15 2 0 99 10 8 145 chain 28594 chr7 159138663 + 71303573 71303950 THE1C 375 + 0 375 90763 61 7 9 51 3 0 229 1 0 25 chain 15609 chr7 159138663 + 71312173 71312999 THE1B 368 + 0 328 139555 19 1 0 89 23 27 34 1 0 6 568 69 59 2 0 7 1 2 16 chain 43146 chr7 159138663 + 71345842 71346381 MLT2A2 560 + 0 549 65233 341 1 0 58 3 14 136 chain 13831 chr7 159138663 + 71350437 71350615 MER4E1 777 + 581 770 145127 6 1 0 111 0 12 60 chain 20656 chr7 159138663 + 71365255 71365529 L1PB4 2604 + 695 974 125120 66 6 11 202 chain 42811 chr7 159138663 + 71385798 71386354 L1PA7 6471 + 5907 6469 65639 49 0 11 224 0 1 105 22 16 156 chain 3680 chr7 159138663 + 71393544 71393589 MADE1 96 + 46 91 212221 45 chain 22201 chr7 159138663 + 71414170 71415165 MER51B 395 + 0 395 119347 84 0 1 30 14 16 70 678 75 119 chain 22794 chr7 159138663 + 71428162 71428434 AluSc5 308 - 26 297 116611 24 2 1 246 chain 4679 chr7 159138663 + 71446670 71446737 MER21A 919 + 401 463 198768 18 6 1 43 chain 45902 chr7 159138663 + 71503495 71504048 MER41A 554 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71607000 71613087 L1PA5 6144 + 22 6144 3431 401 0 1 97 4 0 1824 0 2 158 0 1 349 0 2 300 0 1 1183 0 4 90 0 1 192 1 0 196 0 1 467 1 5 86 1 0 117 0 18 463 1 6 38 0 1 118 chain 4447 chr7 159138663 + 71614481 71614536 MSTB1 431 + 364 419 201374 55 chain 41867 chr7 159138663 + 71652878 71653676 L1PB1 5432 + 4737 5422 66808 57 9 0 10 1 9 288 84 4 9 1 0 24 1 0 9 20 15 6 2 0 52 2 1 15 1 0 45 40 27 19 2 0 4 1 0 15 2 0 21 6 5 19 1 0 13 1 0 18 chain 16868 chr7 159138663 + 71657659 71657844 L1PA2 6032 - 18 207 135918 40 0 4 145 chain 2163 chr7 159138663 + 71658717 71658744 L1PB1 5432 + 5071 5098 237048 27 chain 4235 chr7 159138663 + 71658777 71658851 L1PB1 5432 + 5144 5212 204098 13 6 2 9 2 0 44 chain 3553 chr7 159138663 + 71658883 71658922 L1PB1 5432 + 5242 5281 214491 39 chain 6659 chr7 159138663 + 71658978 71659079 L1PB1 5432 + 5327 5422 180009 5 1 0 14 2 0 24 1 0 21 1 0 14 1 0 17 chain 47409 chr7 159138663 + 71667752 71668336 L1PA8 5853 + 5255 5853 60896 74 0 18 47 0 2 166 1 0 46 2 0 71 1 0 61 2 1 19 1 0 93 chain 97723 chr7 159138663 + 71685028 71686101 L1PA4 6152 - 1 1073 37356 339 1 0 733 chain 43307 chr7 159138663 + 71694386 71695258 L1PA8 5853 + 5313 5853 65034 251 1 0 45 2 0 73 1 0 8 1 0 49 5 2 19 325 1 92 chain 25746 chr7 159138663 + 71722366 71722732 L1PB2 3958 + 3477 3838 101100 63 2 0 6 0 1 46 6 5 19 1 0 62 1 0 92 9 8 59 chain 21511 chr7 159138663 + 71734196 71734439 L1PA4 6152 - 1 245 122097 7 0 1 236 chain 127068 chr7 159138663 + 71760663 71762180 L1P1 4361 - 33 1496 28801 23 1 0 155 1 0 217 0 1 387 0 1 293 0 4 213 68 0 152 0 10 7 chain 39474 chr7 159138663 + 71770997 71771498 MER4E1 777 + 23 522 70053 318 3 2 36 5 0 37 0 4 102 chain 26451 chr7 159138663 + 71784173 71784532 THE1B 368 - 0 368 98233 170 2 0 25 1 0 59 0 13 11 16 0 35 0 15 40 chain 5391 chr7 159138663 + 71796523 71796583 MER66B 489 - 26 86 191080 60 chain 8984 chr7 159138663 + 71804433 71804555 LTR39 781 + 64 186 165692 20 1 2 94 1 0 6 chain 3378 chr7 159138663 + 71812783 71812832 MADE1 96 - 1 66 217530 36 1 17 12 chain 45970 chr7 159138663 + 71846204 71846847 L1PA8 5853 + 5227 5853 62065 269 1 2 35 0 5 8 30 10 8 1 0 45 3 1 68 2 1 14 3 2 45 2 1 19 1 0 46 0 4 43 chain 12322 chr7 159138663 + 71940734 71940897 THE1B 368 + 24 186 150929 15 0 1 129 1 0 6 1 0 11 chain 23984 chr7 159138663 + 71999680 71999964 AluY 311 + 11 295 110418 121 0 1 81 1 0 81 chain 16115 chr7 159138663 + 72007625 72007812 L1PA5 6144 - 18 205 138006 187 chain 44322 chr7 159138663 + 72012278 72013797 MER4D1 891 - 8 891 63802 4 1 0 8 0 2 81 0 1 15 7 8 70 61 38 63 756 143 21 1 0 15 1 0 224 0 2 9 1 0 52 11 19 40 24 15 5 2 0 6 0 1 41 chain 46935 chr7 159138663 + 72024948 72025499 MER41A 554 + 0 554 61277 100 0 3 451 chain 23946 chr7 159138663 + 72026772 72027258 LTR10G 522 + 22 497 110647 69 7 0 27 9 16 40 5 0 11 109 105 61 0 1 13 4 5 79 0 2 16 6 0 30 chain 20052 chr7 159138663 + 72035004 72035238 AluY 311 + 58 293 126962 74 0 1 160 chain 3034 chr7 159138663 + 72044447 72044496 MLT1B 390 - 52 101 224312 9 1 0 5 1 2 33 chain 31238 chr7 159138663 + 72062991 72063410 MLT2A1 477 + 2 477 82100 26 1 0 112 0 1 20 8 12 212 0 53 20 2 1 18 chain 3982 chr7 159138663 + 72067564 72067610 MER47B 469 - 0 46 207660 46 chain 3190 chr7 159138663 + 72072013 72072052 L1MDa 1598 + 441 480 221100 39 chain 24297 chr7 159138663 + 72136941 72137301 THE1B 368 + 0 367 108669 44 0 15 15 0 1 32 6 7 58 10 9 18 5 0 23 3 0 69 1 0 76 chain 4443 chr7 159138663 + 72137621 72137718 MER8 282 + 170 269 201411 21 30 33 12 1 0 33 chain 37961 chr7 159138663 + 72175881 72176385 LTR19B 566 + 0 512 72190 42 1 0 51 1 6 201 1 2 12 0 1 52 6 0 85 1 0 37 3 12 11 chain 64049 chr7 159138663 + 72185724 72186456 L1PA5 6144 - 9 743 50986 408 0 2 324 chain 18735 chr7 159138663 + 72191726 72192104 THE1D 372 - 9 372 130866 55 1 0 84 1 0 24 35 37 68 57 43 28 3 0 6 1 3 15 chain 46596 chr7 159138663 + 72200955 72201516 LTR10C 591 - 29 591 61534 248 0 3 276 3 1 34 chain 3828 chr7 159138663 + 72207641 72207700 MER82 654 - 22 79 209959 46 1 0 6 1 0 5 chain 4164 chr7 159138663 + 72218412 72218460 Tigger1 2417 + 2160 2208 205050 48 chain 16370 chr7 159138663 + 72222681 72222936 MER65A 464 + 60 325 137283 69 9 18 43 1 2 46 9 10 71 1 0 6 chain 14452 chr7 159138663 + 72232127 72232335 MER65A 464 + 136 339 143042 59 18 14 104 1 0 26 chain 11855 chr7 159138663 + 72266977 72267164 MER30 238 + 0 238 152815 25 1 33 43 11 24 28 1 7 78 chain 5669 chr7 159138663 + 72284143 72284212 MER5A 189 - 120 189 188397 69 chain 3344 chr7 159138663 + 72288840 72288877 MSTA 426 - 1 38 218149 37 chain 3539 chr7 159138663 + 72312313 72312351 LOR1a 498 - 431 469 214717 38 chain 6295 chr7 159138663 + 72322793 72322872 Tigger3c 601 + 237 317 182851 14 0 1 65 chain 22216 chr7 159138663 + 72327153 72327435 AluY 311 + 11 294 119279 121 0 1 63 1 2 9 9 8 79 chain 6037 chr7 159138663 + 72348862 72348931 MER4D 903 + 715 784 184915 69 chain 76315 chr7 159138663 + 72378728 72379740 MER11C 1089 - 37 1089 45308 54 0 1 11 1 0 204 0 8 56 0 5 8 0 1 105 62 63 199 1 18 57 0 3 29 0 5 225 chain 9098 chr7 159138663 + 72380615 72380743 MER75B 242 - 0 128 165080 26 1 0 40 4 5 57 chain 84813 chr7 159138663 + 72388214 72389224 LTR13 1007 - 0 1007 41586 213 0 2 81 4 0 169 0 2 236 1 0 199 6 0 8 0 6 8 0 3 6 6 1 73 chain 20738 chr7 159138663 + 72391443 72391731 AluSq 315 + 11 297 124825 25 3 0 100 0 1 42 2 0 87 13 15 16 chain 24750 chr7 159138663 + 72394126 72394436 AluYa5 310 - 1 310 106177 245 3 1 33 11 12 18 chain 81129 chr7 159138663 + 72421752 72422735 LTR5B 1012 + 0 1012 43122 95 5 7 16 5 19 218 0 1 44 7 14 60 0 2 171 0 2 329 0 1 33 chain 8476 chr7 159138663 + 72450302 72450405 MER50 708 + 571 674 168422 103 chain 7207 chr7 159138663 + 72453902 72453990 HY3 101 - 12 100 176017 88 chain 24138 chr7 159138663 + 72467271 72467570 AluSp 311 - 14 311 109530 5 2 0 292 chain 7964 chr7 159138663 + 72481664 72481760 HY3 101 + 0 96 171257 96 chain 7964 chr7 159138663 + 72509640 72509736 HY3 101 + 0 96 171256 96 chain 36410 chr7 159138663 + 72548405 72548842 L1PA5 6144 + 5681 6132 74355 86 13 27 338 chain 7701 chr7 159138663 + 72603535 72603619 L1PA5 6144 + 6055 6139 172930 84 chain 5891 chr7 159138663 + 72635706 72635771 AluJb 308 - 54 119 186260 65 chain 7930 chr7 159138663 + 72642494 72642656 MLT1B 390 - 215 365 171443 79 45 34 10 1 0 27 chain 25759 chr7 159138663 + 72660843 72661151 AluSc5 308 - 0 308 101047 308 chain 14442 chr7 159138663 + 72687613 72687891 L1PB4 2604 - 183 462 143073 58 40 39 33 7 8 68 16 17 56 chain 13986 chr7 159138663 + 72691733 72691915 L1PA16 3655 + 3402 3578 144625 156 6 0 20 chain 165019 chr7 159138663 + 72697294 72699306 SVA_F 1814 - 3 1805 22650 20 2 0 25 0 2 577 1 0 10 1 0 203 48 0 12 124 14 20 49 0 712 1 0 207 chain 4093 chr7 159138663 + 72698133 72698180 SVA_F 1814 - 664 711 112091 47 chain 7664 chr7 159138663 + 72698193 72698281 SVA_F 1814 - 725 815 112091 61 0 1 12 0 1 15 chain 2590 chr7 159138663 + 72698354 72698386 SVA_F 1814 - 614 646 157135 19 1 0 10 0 1 2 chain 24535 chr7 159138663 + 72720098 72720410 AluSp 311 + 0 310 107338 68 11 10 196 4 3 33 chain 5807 chr7 159138663 + 72729789 72730240 MADE1 96 - 1 96 187071 37 369 13 45 chain 73115 chr7 159138663 + 72774329 72775169 L1PA5 6144 + 5298 6142 46972 726 1 5 113 chain 25088 chr7 159138663 + 72783917 72784214 AluSp 311 - 6 300 104362 24 1 0 149 2 0 121 chain 4762 chr7 159138663 + 72800185 72800246 MER50 708 + 495 560 197789 8 1 0 40 0 5 12 chain 42437 chr7 159138663 + 72802698 72803438 LTR10F 562 - 0 562 66097 331 3 0 72 0 56 60 231 0 43 chain 5454 chr7 159138663 + 72818130 72818189 HY3 101 - 12 71 190481 59 chain 26175 chr7 159138663 + 72820471 72820774 AluSc 308 - 5 308 99300 303 chain 23012 chr7 159138663 + 72823152 72823446 AluY 311 + 0 291 115565 35 6 0 90 1 2 139 0 2 23 chain 5826 chr7 159138663 + 72890292 72890364 L1MB8 1703 - 185 255 186892 6 2 0 64 chain 11833 chr7 159138663 + 72928296 72928514 Tigger4a 237 - 0 217 152894 30 12 19 12 7 0 52 5 12 75 8 0 17 chain 24713 chr7 159138663 + 72975232 72975539 AluSp 311 - 15 311 106367 9 11 0 287 chain 3242 chr7 159138663 + 72999608 72999644 MER5A 189 + 1 37 220181 36 chain 23788 chr7 159138663 + 73006794 73007098 AluY 311 + 0 293 111542 66 4 0 67 16 9 151 chain 23556 chr7 159138663 + 73057600 73057860 AluY 311 + 38 299 112814 94 0 1 166 chain 9439 chr7 159138663 + 73073995 73074116 FLAM_C 140 + 11 132 163367 121 chain 8019 chr7 159138663 + 73167608 73167710 Tigger1 2417 + 1822 1924 170940 102 chain 24711 chr7 159138663 + 73191981 73192273 AluSq2 311 - 0 291 106380 177 1 0 114 chain 17788 chr7 159138663 + 73194836 73195049 AluY 311 + 69 283 133450 63 0 1 150 chain 6311 chr7 159138663 + 73195049 73195194 L1MA3 4352 + 4212 4352 182704 39 16 17 14 9 8 26 1 0 12 6 2 22 chain 12659 chr7 159138663 + 73195773 73195932 MSTB 430 - 0 160 149607 58 0 1 101 chain 81747 chr7 159138663 + 73201735 73205524 MER41-int 2638 + 135 2636 42872 35 28 13 30 4 1 34 1 0 5 18 8 35 4 0 70 2209 1256 68 6 5 171 15 13 32 2 0 241 20 21 50 5 7 174 303 0 140 0 3 89 chain 33872 chr7 159138663 + 73205539 73205967 MER41A 554 + 5 441 77826 19 0 3 60 5 10 221 0 1 4 1 0 118 chain 134351 chr7 159138663 + 73210948 73212455 SVA_D 2077 - 28 2069 27141 607 0 534 147 40 0 11 0 40 702 chain 11690 chr7 159138663 + 73230190 73230344 L1PA5 6144 - 0 156 153518 71 0 2 83 chain 151724 chr7 159138663 + 73249571 73251624 SVA_F 1814 + 0 1803 24372 827 281 0 29 1 0 31 0 1 37 1 0 4 46 33 166 1 49 620 3 0 6 chain 7528 chr7 159138663 + 73250455 73250640 SVA_F 1814 + 925 1155 122347 21 1 16 16 1 2 35 37 65 8 0 1 66 chain 3444 chr7 159138663 + 73250529 73250566 SVA_F 1814 + 1093 1130 135983 37 chain 3630 chr7 159138663 + 73250640 73250679 SVA_F 1814 + 1204 1243 135983 39 chain 1872 chr7 159138663 + 73250782 73250828 SVA_F 1814 + 1219 1265 122347 46 chain 3624 chr7 159138663 + 73257646 73257689 MER3 215 - 125 168 213254 43 chain 19978 chr7 159138663 + 73258608 73258898 MER4A1 472 + 150 462 127213 24 0 1 18 20 21 11 0 21 14 1 0 202 chain 79134 chr7 159138663 + 73259742 73260689 LTR13A 966 + 0 966 43984 74 1 5 94 0 17 85 0 1 394 2 0 127 16 15 154 chain 50085 chr7 159138663 + 73262214 73262843 PABL_A 660 - 0 660 58954 299 0 1 29 7 12 113 0 1 115 0 9 45 3 18 18 chain 36792 chr7 159138663 + 73274354 73274823 MER9a2 513 - 67 513 73807 34 1 0 104 23 1 28 1 0 265 0 1 13 chain 17061 chr7 159138663 + 73343558 73343882 L1MC1 2226 - 195 505 135428 39 2 0 12 29 26 40 1 0 26 10 4 28 0 3 9 10 4 76 5 6 37 chain 5252 chr7 159138663 + 73347632 73347708 MLT1A0 366 - 24 113 192500 13 0 9 18 1 5 44 chain 5364 chr7 159138663 + 73434230 73434319 MLT1B 390 + 0 88 191383 34 17 16 38 chain 23031 chr7 159138663 + 73486734 73487016 AluSp 311 + 15 294 115486 117 3 0 162 chain 20390 chr7 159138663 + 73526873 73527167 AluY 311 + 11 295 125927 53 35 24 37 1 2 168 chain 20012 chr7 159138663 + 73530450 73530748 AluSq2 311 + 9 290 127106 102 7 5 17 0 1 17 25 7 103 4 6 23 chain 19480 chr7 159138663 + 73532445 73532691 AluSc 308 + 21 265 128714 110 2 0 17 2 0 5 0 2 110 chain 11284 chr7 159138663 + 73548104 73548277 MER41B 635 + 11 173 155114 106 23 12 44 chain 7118 chr7 159138663 + 73552073 73552167 LTR29 598 - 176 269 176628 54 1 0 39 chain 4532 chr7 159138663 + 73554300 73554441 MER41B 635 + 79 220 129078 45 30 30 66 chain 23372 chr7 159138663 + 73554462 73554745 AluSp 311 + 8 288 113799 11 1 0 113 2 0 156 chain 4725 chr7 159138663 + 73554755 73554902 MER41B 635 + 220 368 129078 58 0 1 89 chain 21165 chr7 159138663 + 73561938 73562191 AluSp 311 + 11 264 123328 253 chain 42941 chr7 159138663 + 73574368 73575921 MER41B 635 + 0 632 65490 93 1 0 34 1 2 11 0 5 309 987 61 117 chain 13097 chr7 159138663 + 73577147 73577382 LTR9 672 - 337 581 147858 34 40 41 45 4 13 7 1 0 104 chain 39963 chr7 159138663 + 73579296 73579864 LTR61 567 + 0 554 69375 17 6 0 38 17 11 25 7 0 22 1 0 22 0 5 81 7 11 286 3 0 36 chain 24666 chr7 159138663 + 73586261 73586553 AluY 311 + 0 296 106630 69 1 4 59 0 1 163 chain 29121 chr7 159138663 + 73616238 73616544 AluYb8 318 - 12 318 88453 306 chain 20247 chr7 159138663 + 73633347 73633561 AluYb8 318 - 0 214 126389 214 chain 25181 chr7 159138663 + 73679837 73680123 AluSc5 308 - 13 302 103843 128 0 3 158 chain 28605 chr7 159138663 + 73696117 73696423 AluYa5 310 - 5 310 90712 179 1 0 126 chain 7729 chr7 159138663 + 73698544 73698645 FLAM_A 137 + 9 109 172719 42 3 2 56 chain 6059 chr7 159138663 + 73711148 73711241 MLT1B 390 + 263 357 184750 54 10 11 29 chain 3321 chr7 159138663 + 73737360 73737405 Tigger3 1187 + 918 963 218561 45 chain 22189 chr7 159138663 + 73777334 73777620 AluSp 311 - 17 300 119405 12 10 5 166 1 3 97 chain 23659 chr7 159138663 + 73795534 73795807 AluSc5 308 - 25 299 112258 4 0 1 269 chain 3357 chr7 159138663 + 73799075 73799121 L1MB5 1630 - 524 572 217916 15 0 2 31 chain 21929 chr7 159138663 + 73816425 73816689 AluY 311 + 50 310 120502 83 2 0 163 2 0 14 chain 22478 chr7 159138663 + 73826139 73826449 AluSz6 309 + 14 307 118119 114 11 0 82 4 1 74 3 0 22 chain 22911 chr7 159138663 + 73861762 73862049 AluYc3 301 + 2 292 116059 111 13 14 89 0 2 74 chain 20239 chr7 159138663 + 73886794 73887076 AluSq 315 + 0 279 126415 134 26 23 122 chain 23558 chr7 159138663 + 73954493 73954766 AluSp 311 - 29 302 112808 273 chain 22660 chr7 159138663 + 73962467 73962765 AluY 311 + 2 296 117272 121 27 20 7 0 3 143 chain 16078 chr7 159138663 + 73998825 73999103 MER4C 627 - 314 605 138119 38 0 2 14 8 11 10 15 16 10 9 8 112 3 11 59 chain 23981 chr7 159138663 + 73999143 73999430 AluSq10 312 - 25 312 110440 287 chain 3592 chr7 159138663 + 74000336 74000378 MIRb 242 + 68 110 213797 42 chain 6787 chr7 159138663 + 74011128 74011211 5S 121 - 31 114 179054 83 chain 18799 chr7 159138663 + 74040506 74040715 AluYa5 310 - 5 211 130680 179 3 0 27 chain 28186 chr7 159138663 + 74051644 74051950 AluYa5 310 - 6 310 92354 211 2 0 93 chain 28359 chr7 159138663 + 74060693 74061001 AluYg6 310 + 0 308 91733 308 chain 21136 chr7 159138663 + 74065523 74065766 AluSp 311 + 46 289 123423 243 chain 18832 chr7 159138663 + 74100130 74100354 AluY 311 + 12 250 130570 19 0 13 79 0 1 126 chain 7851 chr7 159138663 + 74157216 74157304 L1PA5 6144 + 6055 6143 171990 88 chain 23126 chr7 159138663 + 74177924 74178204 AluSp 311 - 17 298 115016 88 1 2 191 chain 5891 chr7 159138663 + 74189404 74189469 AluJb 308 - 54 119 186259 65 chain 8061 chr7 159138663 + 74196178 74196340 MLT1B 390 - 215 365 170693 79 45 34 10 1 0 27 chain 25750 chr7 159138663 + 74214543 74214851 AluSc5 308 - 0 308 101087 308 chain 14609 chr7 159138663 + 74241530 74241815 L1PB4 2604 - 183 475 142553 58 40 39 33 7 8 68 16 17 54 0 6 9 chain 13855 chr7 159138663 + 74245652 74245834 L1PA16 3655 + 3402 3578 145055 156 6 0 20 chain 22504 chr7 159138663 + 74284808 74285089 AluSc 308 - 15 297 118011 138 6 7 137 chain 7964 chr7 159138663 + 74311935 74312031 HY3 101 + 0 96 171255 96 chain 36864 chr7 159138663 + 74357883 74358327 L1PA5 6144 + 5681 6139 73708 86 13 27 345 chain 23836 chr7 159138663 + 74459629 74459908 AluSc5 308 - 16 295 111276 279 chain 15806 chr7 159138663 + 74534436 74535165 L1PB4 2604 + 2129 2552 138940 7 0 6 56 16 17 68 7 8 33 40 39 46 321 0 38 82 90 15 chain 5047 chr7 159138663 + 74539703 74539762 L1PA8A 6298 + 6188 6247 194662 59 chain 8061 chr7 159138663 + 74579772 74579934 MLT1B 390 + 25 175 170692 27 1 0 10 45 34 79 chain 7027 chr7 159138663 + 74586472 74586721 AluJb 308 + 5 254 177276 33 1 136 11 95 0 4 40 0 65 chain 3832 chr7 159138663 + 74631714 74631761 MADE1 96 + 1 48 209889 47 chain 23986 chr7 159138663 + 74668764 74669057 AluSq2 311 + 4 300 110409 59 0 2 68 0 1 166 chain 36410 chr7 159138663 + 74673783 74674220 L1PA5 6144 - 12 463 74357 338 13 27 86 chain 7964 chr7 159138663 + 74712852 74712948 HY3 101 - 5 101 171261 96 chain 26427 chr7 159138663 + 74835215 74835530 AluSx1 309 + 0 309 98314 129 6 0 180 chain 23986 chr7 159138663 + 74882923 74883216 AluSq2 311 + 4 300 110408 59 0 2 68 0 1 166 chain 36410 chr7 159138663 + 74888032 74888469 L1PA5 6144 - 12 463 74356 338 13 27 86 chain 7964 chr7 159138663 + 74927126 74927222 HY3 101 - 5 101 171260 96 chain 7964 chr7 159138663 + 74955151 74955247 HY3 101 - 5 101 171259 96 chain 7964 chr7 159138663 + 74983131 74983227 HY3 101 - 5 101 171258 96 chain 7207 chr7 159138663 + 75010915 75011003 HY3 101 + 1 89 176016 88 chain 8476 chr7 159138663 + 75014500 75014603 MER50 708 - 34 137 168423 103 chain 81574 chr7 159138663 + 75042165 75043148 LTR5B 1012 - 0 1012 42941 33 0 1 329 0 2 173 0 2 58 7 14 44 0 1 207 0 14 32 5 7 95 chain 5255 chr7 159138663 + 75087157 75087247 MER50 708 - 107 188 192456 43 17 8 30 chain 6132 chr7 159138663 + 75087250 75087334 MER75B 242 + 114 199 184155 57 4 5 23 chain 27949 chr7 159138663 + 75102952 75103253 AluYa5 310 - 9 310 93168 301 chain 6013 chr7 159138663 + 75118116 75118196 MER67C 710 - 49 129 185111 80 chain 6041 chr7 159138663 + 75142351 75142422 HY3 101 - 2 73 184881 71 chain 21546 chr7 159138663 + 75270811 75271085 AluSp 311 - 14 300 121981 156 6 0 77 0 18 35 chain 24845 chr7 159138663 + 75280506 75280807 AluSx4 309 + 11 309 105651 96 1 0 170 2 0 32 chain 24926 chr7 159138663 + 75285800 75286093 AluSp 311 - 19 310 105182 5 2 0 286 chain 4200 chr7 159138663 + 75331861 75331914 MSTB1 431 - 39 92 204536 53 chain 8848 chr7 159138663 + 75335839 75335944 L1PA6 6164 - 6 111 166385 105 chain 91745 chr7 159138663 + 75335949 75336921 L1HS 6032 - 0 972 39053 972 chain 51040 chr7 159138663 + 75336921 75337466 L1HS 6032 + 4521 5066 58174 545 chain 24371 chr7 159138663 + 75394980 75395284 AluSx1 309 + 9 308 108252 32 5 0 267 chain 26062 chr7 159138663 + 75408229 75408620 LTR7 482 + 0 477 99782 101 15 14 17 0 51 41 5 37 46 0 1 78 0 2 31 13 14 44 chain 274336 chr7 159138663 + 75408627 75415658 HERVH-int 3825 + 0 3825 14961 319 26 25 20 4 5 33 15 14 30 474 31 8 2 0 4 0 1 25 53 254 9 1 0 92 2 0 110 2 1 248 15 0 201 9 0 28 0 2 10 1 0 307 2776 0 309 4 9 32 0 1 498 11 13 5 2 0 329 6 0 4 158 0 39 1 0 809 chain 29075 chr7 159138663 + 75410853 75411244 LTR7 482 + 0 474 88661 79 7 57 88 0 1 29 7 38 13 0 1 168 chain 4310 chr7 159138663 + 75411300 75411383 HERVH-int 3825 + 45 132 203102 12 18 22 53 chain 23654 chr7 159138663 + 75411396 75411699 HERVH-int 3825 + 145 446 112289 188 1 0 66 23 22 25 chain 13632 chr7 159138663 + 75413139 75413328 HERVH-int 3825 + 1469 1653 145847 4 1 0 99 5 0 55 0 1 25 chain 27699 chr7 159138663 + 75417481 75417875 LTR7 482 + 0 477 94044 28 8 7 66 0 50 73 5 37 46 0 1 111 13 14 44 chain 12887 chr7 159138663 + 75431179 75431361 MER41B 635 + 0 183 148682 113 13 14 56 chain 43852 chr7 159138663 + 75436968 75437512 MER41A 554 + 0 544 64385 74 0 1 291 8 7 171 chain 4648 chr7 159138663 + 75472450 75472499 LTR47B 464 - 43 92 199085 49 chain 13350 chr7 159138663 + 75480497 75480657 L1PA5 6144 - 3 160 146880 12 3 0 145 chain 23018 chr7 159138663 + 75504976 75505278 AluSp 311 + 0 299 115539 47 10 7 245 chain 5281 chr7 159138663 + 75514868 75514938 MSTB 430 - 13 84 192192 43 0 1 27 chain 18988 chr7 159138663 + 75520377 75520625 MER1A 529 - 0 260 130137 58 11 15 47 0 9 15 1 0 116 chain 30090 chr7 159138663 + 75581297 75581712 SVA_F 1814 - 523 1150 84529 17 1 0 184 0 142 67 0 1 25 1 0 8 30 62 9 1 0 25 6 46 41 chain 2792 chr7 159138663 + 75581600 75581630 SVA_F 1814 - 678 708 110829 30 chain 6235 chr7 159138663 + 75581712 75581779 SVA_F 1814 - 790 921 110829 12 0 64 55 chain 77084 chr7 159138663 + 75581793 75582629 SVA_D 2077 - 1179 2018 44923 508 0 3 328 chain 8496 chr7 159138663 + 75632481 75632583 AluJr 308 + 10 112 168312 102 chain 12718 chr7 159138663 + 75634353 75634495 L1PA4 6152 + 6009 6151 149383 142 chain 12137 chr7 159138663 + 75636305 75636455 MER2 342 + 73 217 151662 7 6 0 137 chain 7704 chr7 159138663 + 75644188 75644281 L1PA17 2846 + 2013 2106 172910 93 chain 3330 chr7 159138663 + 75645824 75645863 MLT2A2 560 + 508 547 218407 39 chain 25834 chr7 159138663 + 75680636 75680933 AluSp 311 - 9 306 100729 297 chain 3634 chr7 159138663 + 75693453 75693492 MER66B 489 - 156 195 213099 39 chain 2912 chr7 159138663 + 75724002 75724188 LTR41 747 - 491 723 226828 17 135 181 34 chain 18182 chr7 159138663 + 75748946 75749213 AluSp 311 - 20 296 132378 63 23 26 147 2 8 32 chain 4399 chr7 159138663 + 75821154 75821207 MLT1J2 417 - 115 168 201947 53 chain 18464 chr7 159138663 + 75828328 75828552 AluSp 311 + 75 300 131600 96 0 1 128 chain 27135 chr7 159138663 + 75846520 75847295 LTR46 455 - 0 455 95813 44 13 9 10 316 0 86 6 5 41 0 3 23 0 1 4 1 0 27 56 54 148 chain 11149 chr7 159138663 + 75872303 75872441 MSTB 430 - 273 411 155634 138 chain 29256 chr7 159138663 + 75885839 75886517 MER41A 554 - 130 554 87759 144 0 56 39 311 0 92 0 1 92 chain 29481 chr7 159138663 + 75895177 75895485 AluYa5 310 - 2 310 86704 308 chain 10036 chr7 159138663 + 75929750 75929877 Tigger3a 397 - 48 175 160402 127 chain 93871 chr7 159138663 + 75937965 75939316 LTR12C 1709 - 0 1709 38393 84 1 0 11 1 34 63 5 4 70 36 37 28 0 29 28 24 23 70 11 4 11 24 0 16 0 2 77 3 1 5 1 0 168 0 286 185 3 4 5 1 0 83 0 43 195 3 4 139 chain 28956 chr7 159138663 + 75945294 75945602 AluYb8 318 - 10 318 89191 308 chain 11770 chr7 159138663 + 75960792 75960970 MER30 238 + 37 238 153175 55 19 30 64 2 14 38 chain 4544 chr7 159138663 + 75972537 75972592 MER20 218 + 98 153 200299 55 chain 70562 chr7 159138663 + 76076377 76077168 L1PA5 6144 + 5355 6144 48131 34 2 0 755 chain 15412 chr7 159138663 + 76082770 76082979 LTR26E 604 + 0 210 140164 140 0 1 4 1 2 50 1 0 13 chain 45486 chr7 159138663 + 76083862 76084753 MER41A 554 - 0 554 62512 83 0 5 290 342 0 176 chain 4107 chr7 159138663 + 76136513 76136651 ORSL 269 - 98 242 205810 20 36 39 11 2 0 25 22 27 22 chain 23539 chr7 159138663 + 76152580 76152868 AluSp 311 - 15 306 112910 104 0 3 184 chain 7930 chr7 159138663 + 76152921 76153020 HY3 101 + 0 99 171441 99 chain 22301 chr7 159138663 + 76182101 76182344 L1P1 4361 + 3950 4192 118907 200 1 0 42 chain 543654 chr7 159138663 + 76190518 76196672 L1PA4 6152 - 1 6149 2248 457 0 2 807 0 1 223 0 2 1143 1 0 263 0 3 67 0 1 485 0 3 1383 1 0 4 0 1 419 0 1 45 17 0 265 1 0 573 chain 69187 chr7 159138663 + 76233504 76234295 L1PA5 6144 - 0 789 48723 138 0 7 2 7 0 610 2 0 32 chain 45861 chr7 159138663 + 76250796 76251677 MER41A 554 + 0 554 62168 164 332 0 302 0 5 83 chain 5255 chr7 159138663 + 76271804 76271894 MER50 708 - 107 188 192455 43 17 8 30 chain 180349 chr7 159138663 + 76280732 76282697 L1PA2 6032 + 4068 6032 20960 312 1 0 1652 chain 46890 chr7 159138663 + 76302607 76303230 LTR9 672 - 13 672 61314 16 1 2 102 8 42 427 1 0 23 1 3 44 chain 73934 chr7 159138663 + 76324695 76325500 L1PA3long 6157 + 5351 6156 46550 805 chain 84374 chr7 159138663 + 76345549 76346650 MER11A 1151 - 0 1151 41764 59 8 7 191 0 32 291 0 19 7 26 7 4 0 1 89 0 1 54 0 1 74 1 0 9 0 11 66 1 0 96 2 1 44 0 8 79 chain 9351 chr7 159138663 + 76349637 76349759 MER85 139 + 6 139 163800 84 0 10 10 0 1 28 chain 19627 chr7 159138663 + 76354655 76354994 THE1C 375 - 40 375 128315 93 17 14 29 7 5 12 7 8 60 0 1 23 26 27 49 2 0 14 chain 544316 chr7 159138663 + 76357802 76363822 L1PA3long 6157 + 0 6152 2167 152 0 1 98 5 6 484 0 1 34 0 128 3423 0 1 1824 chain 74652 chr7 159138663 + 76377094 76377982 L1PA8A 6298 - 8 902 46185 690 0 1 29 0 2 77 0 3 92 chain 281951 chr7 159138663 + 76395729 76399499 L1PB1 5432 + 1692 5420 14539 560 0 1 117 6 2 115 5 6 25 0 1 323 1 0 423 0 1 263 9 10 184 31 14 249 7 0 212 0 1 272 26 29 108 0 13 482 1 2 9 5 0 24 1 0 9 16 11 11 4 2 49 2 1 16 1 0 42 2 1 16 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21773 chr7 159138663 + 76441611 76441867 AluSc 308 - 50 306 121121 256 chain 25291 chr7 159138663 + 76456188 76456547 THE1B 368 - 0 368 103267 124 7 0 25 1 0 20 0 3 22 1 0 108 7 22 44 chain 115925 chr7 159138663 + 76456557 76458097 THE1B-int 1605 - 11 1578 32485 410 14 9 212 1 0 4 2 3 279 15 16 86 10 14 104 0 25 198 0 3 121 0 3 17 4 0 63 chain 50109 chr7 159138663 + 76462572 76463166 L1PA7 6471 - 10 604 58938 14 1 0 345 0 1 234 chain 19988 chr7 159138663 + 76515225 76515521 L1PA8 5853 + 5564 5853 127176 44 2 0 69 15 13 5 1 0 45 2 1 19 7 6 87 chain 25305 chr7 159138663 + 76536852 76537140 L1PA5 6144 - 2 290 103195 288 chain 45530 chr7 159138663 + 76581946 76582841 MER41A 554 - 0 554 62478 83 0 5 290 346 0 176 chain 7964 chr7 159138663 + 76642899 76642995 HY3 101 + 0 96 171254 96 chain 7964 chr7 159138663 + 76670963 76671059 HY3 101 + 0 96 171253 96 chain 137733 chr7 159138663 + 76696954 76698770 L1PBa 3878 - 130 1959 26523 11 2 0 21 2 1 494 7 4 166 9 12 22 1 2 154 11 29 103 0 3 7 6 5 183 14 7 304 1 3 298 chain 541148 chr7 159138663 + 76713832 76720001 L1PA4 6152 - 0 6151 2639 471 0 2 1324 0 4 430 0 1 240 0 1 700 40 7 570 2 0 123 0 1 856 2 7 381 1 0 159 0 2 187 0 3 434 1 0 248 chain 52344 chr7 159138663 + 76729418 76730338 L1PA16 3655 - 36 914 57402 21 24 5 14 4 1 272 19 16 86 1 0 75 52 49 98 0 2 34 97 82 123 chain 28419 chr7 159138663 + 76759914 76760213 AluYg6 310 - 11 310 91504 299 chain 95237 chr7 159138663 + 76770239 76771366 L1PA7 6471 - 2 1134 38023 370 0 1 456 1 2 16 0 3 284 chain 538431 chr7 159138663 + 76771659 76777868 L1PA5 6144 - 10 6144 3083 72 87 3 765 1 0 429 0 1 1191 1 0 319 0 1 918 0 4 284 7 12 2135 chain 4263 chr7 159138663 + 76771763 76771813 L1PA5 6144 - 32 82 203711 50 chain 51318 chr7 159138663 + 76783625 76784212 L1PA5 6144 - 0 590 58090 154 0 1 183 0 1 79 1 2 170 chain 2620 chr7 159138663 + 76786275 76786303 MamRep4096 390 - 284 312 231436 28 chain 90166 chr7 159138663 + 76789113 76790099 L1PA3long 6157 - 1027 2013 39588 986 chain 92403 chr7 159138663 + 76790099 76791114 L1PA3long 6157 + 5142 6157 38844 1015 chain 12849 chr7 159138663 + 76802349 76802516 L1PA8A 6298 + 6126 6292 148852 65 2 1 100 chain 21738 chr7 159138663 + 76814869 76815216 L1M1 2793 + 766 1116 121246 9 2 0 22 3 1 4 1 0 29 2 0 8 1 0 45 14 12 5 1 0 102 1 0 26 0 10 44 0 5 28 chain 47020 chr7 159138663 + 76816432 76817204 MER57-int 2662 - 15 753 61187 22 14 11 9 6 0 7 20 21 17 5 2 10 1 0 5 1 0 26 27 13 15 4 0 53 18 12 11 5 0 12 0 5 64 2 0 358 25 30 35 chain 27971 chr7 159138663 + 76872941 76874013 Tigger3b 1229 + 273 1168 93109 18 1 0 47 0 1 60 0 3 18 5 22 27 16 19 47 558 345 92 10 20 21 0 3 30 22 50 12 28 0 60 chain 3855 chr7 159138663 + 76884267 76884312 MLT1H 522 - 23 68 209507 45 chain 29235 chr7 159138663 + 76890775 76891093 AluYb8 318 - 0 318 87885 318 chain 29548 chr7 159138663 + 76900405 76900786 MLT2A1 477 + 5 385 86425 161 7 4 12 0 1 18 1 3 80 1 0 101 chain 26728 chr7 159138663 + 76904045 76904349 L1PA5 6144 + 5834 6138 97230 304 chain 7413 chr7 159138663 + 76917597 76917697 MSTB 430 - 14 113 174690 58 2 1 40 chain 43998 chr7 159138663 + 76919192 76919692 L1PA5 6144 + 5617 6132 64208 187 0 1 155 0 7 32 0 7 126 chain 299414 chr7 159138663 + 76929495 76933970 L1PB1 5432 - 24 4386 13457 4 1 0 12 1 0 22 1 0 24 2 0 14 14 11 13 31 20 7 1 0 44 7 6 10 2 1 50 30 23 7 1 0 26 42 2 9 7 0 51 1 0 5 0 1 194 21 20 17 4 3 190 0 1 123 1 2 59 2 1 5 1 0 5 0 1 601 4 8 79 0 3 254 0 4 234 0 1 24 11 12 112 4 5 74 7 0 176 303 0 225 5 3 115 1 0 117 0 4 54 12 13 31 2 1 374 3 6 18 4 3 105 0 266 85 20 10 15 1 0 160 0 6 64 24 22 48 1 0 47 chain 36137 chr7 159138663 + 76933970 76934445 LTR2B 499 - 0 490 74722 182 1 0 8 4 5 175 0 19 29 10 7 60 1 0 5 chain 30193 chr7 159138663 + 76946491 76946851 L1PA6 6164 + 5805 6162 84218 165 0 1 4 5 1 186 chain 14366 chr7 159138663 + 76948222 76948390 L1PA5 6144 + 5973 6141 143324 168 chain 22199 chr7 159138663 + 76962219 76962494 AluSc 308 + 16 293 119357 256 0 2 19 chain 24124 chr7 159138663 + 76972256 76972623 HERVH-int 3825 + 3186 3566 109625 57 11 22 18 11 12 131 22 23 117 chain 46166 chr7 159138663 + 76979240 76979748 L1PA3long 6157 + 5650 6157 61880 146 3 0 354 0 2 5 chain 25290 chr7 159138663 + 76993714 76994001 L1PA3long 6157 + 5872 6157 103272 280 2 0 5 chain 117080 chr7 159138663 + 76995678 76997423 L1PREC2 3366 - 302 2045 32101 5 1 0 11 2 0 36 8 6 18 0 1 16 22 8 11 3 0 15 0 4 11 2 0 10 10 7 5 2 0 12 54 42 39 2 1 112 0 3 94 0 5 17 4 6 50 5 0 207 1 5 54 1 0 4 0 12 155 0 3 14 0 2 87 0 2 150 0 3 78 2 1 399 1 3 7 0 4 8 chain 3722 chr7 159138663 + 77005495 77005575 MADE1 96 + 0 94 211609 20 9 25 16 8 6 27 chain 5769 chr7 159138663 + 77015439 77015610 Ricksha_0 1343 - 10 162 187449 9 2 0 13 11 3 14 2 0 9 2 0 4 9 0 18 28 31 46 0 1 4 chain 110046 chr7 159138663 + 77018705 77019954 L1PA4 6152 - 100 1353 34204 49 1 0 5 3 8 645 1 0 48 1 2 496 chain 10231 chr7 159138663 + 77019956 77020078 L1PA4 6152 + 6026 6152 159465 10 0 1 99 0 3 13 chain 43434 chr7 159138663 + 77077317 77077854 MER41A 554 - 0 554 64890 134 8 24 303 1 2 91 chain 8633 chr7 159138663 + 77104144 77104245 MER41B 635 - 534 635 167574 101 chain 2545 chr7 159138663 + 77104958 77105013 Charlie2b 853 - 28 82 232551 23 15 14 17 chain 23793 chr7 159138663 + 77109706 77110001 AluSg7 307 - 5 299 111513 22 2 0 153 0 1 118 chain 28466 chr7 159138663 + 77122289 77122656 THE1B 368 + 0 366 91317 172 11 10 184 chain 126824 chr7 159138663 + 77122658 77124236 THE1B-int 1605 + 0 1600 28853 430 1 26 985 3 0 159 chain 24287 chr7 159138663 + 77127389 77127683 AluY 311 + 0 290 108723 72 5 1 5 1 0 54 0 1 157 chain 152139 chr7 159138663 + 77137858 77139915 SVA_F 1814 + 101 1814 24318 600 0 40 195 0 1 9 0 16 4 274 0 172 127 0 676 chain 16819 chr7 159138663 + 77138666 77138858 SVA_F 1814 + 1093 1284 135108 181 1 0 10 chain 11131 chr7 159138663 + 77139113 77139239 SVA_F 1814 + 963 1089 139739 126 chain 23838 chr7 159138663 + 77139916 77140475 L1PA15 4387 + 3846 4347 111265 36 10 8 22 19 19 21 12 6 57 17 19 70 1 0 26 1 0 54 2 1 19 69 30 22 17 14 7 1 0 4 0 1 31 2 0 14 6 1 19 chain 4370 chr7 159138663 + 77156133 77156204 L1MB3 1562 - 7 77 202311 22 11 10 38 chain 151279 chr7 159138663 + 77162222 77164102 SVA_D 2077 - 0 1951 24432 397 0 4 88 0 1 177 16 12 10 24 0 4 1 0 78 0 1 6 60 37 4 0 1 148 0 1 54 16 20 7 0 1 72 0 36 10 3 0 42 0 40 223 0 1 60 12 48 368 chain 5060 chr7 159138663 + 77163023 77163083 SVA_D 2077 - 1031 1092 69115 8 0 2 50 1 0 1 chain 18859 chr7 159138663 + 77175971 77176232 THE1D 372 - 0 266 130490 147 1 0 25 15 17 51 0 4 22 chain 4348 chr7 159138663 + 77196901 77196977 MER5A 189 + 81 168 202616 28 1 0 5 4 5 14 0 11 24 chain 2244 chr7 159138663 + 77205574 77205640 L1MB8 1703 - 370 437 236044 22 14 15 14 1 0 4 1 2 10 chain 24610 chr7 159138663 + 77276981 77277272 AluYk4 311 + 1 294 106937 161 0 2 130 chain 13418 chr7 159138663 + 77291999 77292174 AluSx 319 + 2 203 146638 32 0 27 64 1 0 78 chain 14681 chr7 159138663 + 77293154 77293338 AluSp 311 + 0 193 142318 72 3 12 109 chain 12675 chr7 159138663 + 77315088 77315242 L1PA4 6152 - 9 167 149553 148 0 4 6 chain 9917 chr7 159138663 + 77316103 77316293 MSTD 398 - 218 392 160982 13 27 28 104 22 5 24 chain 24859 chr7 159138663 + 77319000 77319301 AluSp 311 + 0 295 105571 89 4 0 43 2 0 163 chain 11368 chr7 159138663 + 77377095 77377249 MSTA 426 - 0 152 154821 132 1 0 4 5 4 12 chain 12584 chr7 159138663 + 77430930 77431106 Tigger4b 360 + 133 301 149908 34 1 0 120 7 0 14 chain 2793 chr7 159138663 + 77432905 77432935 MIRb 242 + 167 197 228820 30 chain 21088 chr7 159138663 + 77443830 77444082 AluSc5 308 - 12 308 123581 236 0 44 16 chain 42631 chr7 159138663 + 77445956 77446634 L1MA5A 2387 - 86 733 65860 5 1 0 64 48 17 33 0 1 26 2 0 47 1 0 64 14 15 88 0 1 45 1 0 107 5 7 45 1 0 22 10 11 49 chain 181955 chr7 159138663 + 77459749 77462266 Charlie3 2679 + 68 2674 20791 319 18 15 14 1 59 27 1 0 95 1 0 43 9 8 22 0 1 31 1 0 108 1 4 22 1 2 178 2 3 53 4 0 103 0 3 24 0 4 164 0 36 31 9 7 130 1 0 31 0 3 108 0 1 32 8 9 13 8 0 181 0 11 12 2 0 6 4 1 325 0 1 57 11 5 233 2 0 6 8 9 40 2 1 15 chain 38678 chr7 159138663 + 77465825 77466289 L1PA7 6471 + 5992 6466 71179 150 0 8 158 0 2 156 chain 15449 chr7 159138663 + 77481170 77481730 L1MA3 4352 - 3246 4301 140054 25 1 0 34 6 7 105 322 817 67 chain 29668 chr7 159138663 + 77499585 77500000 MLT2A1 477 - 0 451 85967 6 0 4 27 10 46 9 0 2 168 5 0 10 0 1 24 14 12 142 chain 265636 chr7 159138663 + 77500026 77503673 HERVL-int 5654 - 0 5654 15409 77 0 12 113 1 0 28 1 0 46 0 2 143 10 11 5 1 0 38 2 0 164 3 16 5 1 0 88 0 6 221 0 15 238 1 2 21 0 1 307 1 2 32 0 13 131 0 2248 218 1 0 159 6 3 158 297 0 230 7 4 248 1 0 30 4 6 55 1 2 305 5 7 244 chain 31704 chr7 159138663 + 77503675 77504113 MLT2A1 477 - 4 477 81322 33 23 57 22 0 2 155 0 1 23 0 1 9 5 2 168 chain 10336 chr7 159138663 + 77527899 77528069 MER82 654 + 9 242 158958 36 5 4 32 12 72 68 0 4 17 chain 16045 chr7 159138663 + 77534206 77534425 MER30 238 + 0 238 138229 108 2 0 7 2 23 100 chain 6072 chr7 159138663 + 77546341 77546583 L1MC4 1079 - 660 940 184634 57 154 192 31 chain 23719 chr7 159138663 + 77562290 77562561 AluY 311 + 17 289 111938 115 0 1 156 chain 25296 chr7 159138663 + 77605360 77605688 MER83C 372 - 13 372 103247 175 9 40 144 chain 13971 chr7 159138663 + 77616518 77616725 L1P5 443 - 234 440 144677 55 1 0 8 16 17 122 1 0 4 chain 242818 chr7 159138663 + 77617194 77620385 L1PBa1 4058 - 847 4047 16619 858 0 1 324 2 1 112 1 2 134 7 18 60 9 14 25 1 0 197 3 4 110 5 1 167 0 2 73 10 9 200 0 13 33 4 0 24 33 33 174 14 15 29 0 1 4 1 0 135 33 34 64 3 2 81 1 0 130 1 0 65 18 15 8 10 0 28 chain 15354 chr7 159138663 + 77632853 77633062 MER47A 366 + 157 366 140330 76 1 2 72 1 0 59 chain 9890 chr7 159138663 + 77649800 77649989 MER30 238 - 0 238 161120 25 13 19 35 0 6 15 1 0 10 11 25 56 7 31 16 chain 30376 chr7 159138663 + 77705881 77706197 AluYb9 318 + 0 316 83723 316 chain 4783 chr7 159138663 + 77738116 77738171 L1M1 2793 + 1376 1431 197532 55 chain 24719 chr7 159138663 + 77758990 77759280 AluSp 311 + 11 310 106331 74 1 10 215 chain 14902 chr7 159138663 + 77774099 77774316 L1PA8A 6298 - 9 224 141623 39 5 3 62 15 15 96 chain 25042 chr7 159138663 + 77791566 77791866 AluYc 301 + 6 296 104587 116 10 0 174 chain 8413 chr7 159138663 + 77794550 77794648 AluJb 308 + 191 289 168770 98 chain 5328 chr7 159138663 + 77814366 77814637 MER33 330 - 35 313 191736 15 0 1 5 1 0 19 186 193 45 chain 31723 chr7 159138663 + 77869307 77869671 L1PA6 6164 - 2 368 81290 9 0 2 355 chain 512303 chr7 159138663 + 77898109 77904716 L1PA7 6471 - 6 6471 5942 291 0 1 33 10 9 264 0 1 27 3 4 132 2 3 79 2 0 5 7 9 11 0 12 103 3 8 651 0 4 272 216 15 151 3 0 7 16 15 186 6 20 486 0 2 90 0 4 22 9 13 38 0 1 194 3 4 29 1 0 33 0 1 136 0 3 463 0 1 461 0 5 243 3 4 205 1 2 110 0 1 534 0 1 273 0 1 10 7 5 305 6 1 68 1 0 341 1 8 54 chain 16719 chr7 159138663 + 77900004 77900209 L1PA7 6471 + 2854 3059 135473 205 chain 465291 chr7 159138663 + 77917901 77923401 L1PA5 6144 + 614 6140 8209 555 9 0 54 0 1 146 0 1 63 4 9 153 0 1 62 7 1 174 0 5 144 4 0 40 5 6 143 0 2 139 0 1 41 0 5 200 0 4 131 7 2 78 0 4 21 0 5 30 1 0 26 0 4 263 0 5 2849 8 15 143 chain 69769 chr7 159138663 + 77926546 77927315 L1PA2 6032 + 5269 6032 48485 607 6 0 156 chain 8647 chr7 159138663 + 77942340 77942473 L1PB4 2604 + 2403 2549 167493 52 17 30 64 chain 425557 chr7 159138663 + 77946849 77952055 L1PA7 6471 + 844 6438 9405 332 0 21 80 2 0 495 7 11 380 0 4 467 45 382 80 0 4 402 1 0 47 9 13 251 0 4 183 1 0 42 5 6 4 1 0 613 0 4 952 0 3 32 0 4 38 0 2 249 6 7 482 chain 29121 chr7 159138663 + 77959652 77959961 AluYf4 310 + 0 309 88455 309 chain 110419 chr7 159138663 + 77969632 77970966 L1PA7 6471 + 3817 5150 34091 774 3 0 34 1 0 107 0 1 96 0 1 58 0 1 261 chain 110718 chr7 159138663 + 77970967 77972284 L1PA7 6471 + 5150 6466 34023 475 6 9 67 0 2 133 11 7 616 2 0 7 chain 5112 chr7 159138663 + 77985669 77985738 L1MA5A 2387 + 2238 2306 193956 57 1 0 11 chain 8485 chr7 159138663 + 78003934 78004035 L1PA16 3655 - 2294 2396 168382 83 0 1 18 chain 6193 chr7 159138663 + 78023495 78023575 MLT2B2 565 - 485 565 183639 80 chain 71487 chr7 159138663 + 78032331 78033133 L1PA5 6144 - 12 815 47621 305 0 1 497 chain 101816 chr7 159138663 + 78033133 78034313 L1PA5 6144 + 4133 5310 36310 293 9 6 788 0 1 73 1 0 16 chain 122741 chr7 159138663 + 78052780 78054355 THE1B-int 1605 + 0 1599 30143 13 5 7 234 3 1 175 1 26 219 0 3 218 3 0 124 2 1 79 9 10 143 1 0 346 chain 28641 chr7 159138663 + 78055611 78055932 L1PA3long 6157 + 5834 6156 90559 114 0 1 207 chain 4032 chr7 159138663 + 78080927 78081008 MIR 256 + 109 188 206888 35 23 21 23 chain 25422 chr7 159138663 + 78107241 78107599 L1PA7 6471 - 1 333 102585 4 1 0 64 3 1 6 0 2 159 37 12 84 chain 22343 chr7 159138663 + 78124445 78124714 L1PA7 6471 - 10 284 118731 6 0 5 263 chain 13264 chr7 159138663 + 78133142 78133301 THE1D 372 + 211 370 147236 159 chain 29612 chr7 159138663 + 78165420 78165728 AluYa5 310 - 2 310 86167 308 chain 13900 chr7 159138663 + 78166168 78166485 L1PB1 5432 - 28 317 144917 11 1 0 23 1 0 16 33 28 17 39 28 45 1 0 17 1 0 50 3 1 9 6 2 13 1 0 10 1 0 19 chain 9227 chr7 159138663 + 78174066 78174180 AluSp 311 + 197 311 164412 114 chain 21512 chr7 159138663 + 78201991 78202258 AluSp 311 - 24 301 122091 247 0 10 20 chain 12974 chr7 159138663 + 78202723 78202881 HERVL-int 5654 - 2474 2641 148337 64 0 9 94 chain 28568 chr7 159138663 + 78206794 78207197 LTR7 482 - 0 481 90874 158 0 10 34 2 0 19 5 37 109 23 61 53 chain 3047 chr7 159138663 + 78218949 78218981 U2 167 - 135 167 224053 32 chain 21517 chr7 159138663 + 78222480 78222716 AluY 311 + 53 290 122079 79 0 1 157 chain 13013 chr7 159138663 + 78223582 78223772 PABL_A 660 + 0 195 148194 63 1 6 76 9 8 5 0 1 36 chain 29853 chr7 159138663 + 78238160 78238579 MLT2A1 477 - 0 457 85266 39 16 46 55 1 5 9 1 0 150 1 5 25 0 1 122 chain 26299 chr7 159138663 + 78254101 78254474 Tigger3b 1229 + 197 571 98838 71 24 23 16 1 0 28 1 3 32 0 1 200 chain 85924 chr7 159138663 + 78276412 78277468 L1PA6 6164 + 5102 6161 41184 5 0 1 80 8 12 18 5 0 100 0 4 352 1 0 487 chain 119073 chr7 159138663 + 78281673 78283102 L1PA7 6471 + 5040 6470 31381 155 0 4 116 15 3 96 0 1 199 2 0 11 0 1 449 0 1 284 0 8 102 chain 4283 chr7 159138663 + 78289236 78289285 L1PA5 6144 + 5781 5830 203441 49 chain 27698 chr7 159138663 + 78289285 78289595 L1PA5 6144 + 5831 6141 94049 310 chain 118408 chr7 159138663 + 78296708 78298003 L1PA3long 6157 - 0 1293 31584 639 2 0 654 chain 185785 chr7 159138663 + 78298003 78300075 L1PA3long 6157 + 2759 4833 20433 166 0 1 852 1 0 95 0 1 493 0 1 465 chain 38111 chr7 159138663 + 78311565 78312023 L1PA7 6471 - 25 484 71967 246 0 4 65 4 1 143 chain 9385 chr7 159138663 + 78312023 78312131 L1PA7 6471 + 5886 5994 163207 108 chain 11055 chr7 159138663 + 78353302 78353433 LOR1a 498 - 0 131 155991 131 chain 29438 chr7 159138663 + 78357870 78358180 AluYa5 310 - 0 310 86902 310 chain 47947 chr7 159138663 + 78379215 78379806 L1PA7 6471 - 15 600 60524 135 0 1 6 1 2 299 8 0 142 chain 42386 chr7 159138663 + 78453559 78454086 L1PA8 5853 - 464 994 66171 305 0 2 75 0 1 147 chain 33864 chr7 159138663 + 78454086 78454567 L1PA8 5853 + 5398 5853 77833 5 1 0 117 0 1 37 7 6 45 2 0 70 1 0 11 1 0 50 21 1 19 2 1 92 chain 74504 chr7 159138663 + 78461981 78462852 MER11D 897 + 0 895 46273 10 0 1 587 4 27 270 chain 518217 chr7 159138663 + 78484584 78490675 L1PA5 6144 - 12 6144 5353 740 2 5 170 0 1 1714 0 1 186 0 1 150 1 0 73 0 1 463 0 15 298 3 1 629 0 1 513 9 0 91 1 4 477 0 1 429 0 12 19 3 17 120 chain 76648 chr7 159138663 + 78496169 78497015 L1PA3long 6157 + 5309 6156 45142 74 0 1 520 1 0 180 0 1 71 chain 10788 chr7 159138663 + 78500006 78500148 L1PB2 3958 + 3696 3836 157043 57 2 0 7 0 1 14 1 0 61 chain 24568 chr7 159138663 + 78510309 78510659 L1PA16 3655 + 20 366 107157 5 1 0 26 2 0 78 1 0 129 12 13 4 1 0 91 chain 20156 chr7 159138663 + 78510670 78510892 L1PA5 6144 + 5910 6132 126656 222 chain 536957 chr7 159138663 + 78517061 78523203 L1PA4 6152 + 2 6152 3317 1705 0 1 599 0 1 5 0 1 2567 0 1 1094 0 2 23 1 3 148 chain 18063 chr7 159138663 + 78526884 78527124 L1PREC2 3366 - 572 810 132690 41 9 7 190 chain 81790 chr7 159138663 + 78538176 78539544 L1PA8A 6298 + 5227 6273 42849 262 7 6 128 3 0 19 0 4 22 325 0 99 0 3 413 4 0 4 1 5 81 chain 30370 chr7 159138663 + 78541654 78542072 MLT2A1 477 + 0 415 83739 168 2 6 5 0 1 24 0 1 90 11 16 74 4 0 12 5 0 10 5 0 8 chain 228742 chr7 159138663 + 78551510 78554051 L1PA3long 6157 - 0 2542 17371 2518 0 1 23 chain 9207 chr7 159138663 + 78655786 78655905 L1MA7 2200 + 1225 1343 164520 103 1 0 15 chain 14494 chr7 159138663 + 78668793 78668974 L1MA4 2864 + 1821 2002 142905 181 chain 484868 chr7 159138663 + 78694879 78701562 L1PA7 6471 - 1 6466 7562 26 41 5 10 0 36 83 7 8 554 12 5 33 1 0 6 0 1 79 0 1 103 42 0 470 1 2 231 0 4 867 0 1 272 0 12 108 0 4 482 10 5 38 12 7 317 4 5 54 0 2 118 0 2 55 15 6 422 0 1 53 1 0 351 0 1 10 339 0 49 0 1 307 0 5 8 6 0 33 15 16 133 2 1 164 17 17 92 27 16 28 1 0 139 24 26 75 19 189 106 16 14 4 0 1 191 chain 30780 chr7 159138663 + 78716921 78717279 L1PA7 6471 - 1109 1467 82903 358 chain 70830 chr7 159138663 + 78717299 78718161 L1PA7 6471 - 1490 2336 47999 207 18 0 286 0 2 351 chain 83584 chr7 159138663 + 78718177 78719327 L1PA7 6471 + 5372 6468 42080 171 3 1 23 10 9 43 1 0 15 1 0 439 6 4 125 44 7 204 16 6 49 chain 6439 chr7 159138663 + 78731449 78731525 L1PA8 5853 - 0 78 181714 58 0 2 18 chain 6604 chr7 159138663 + 78739102 78739193 MSTA-int 1630 - 660 748 180426 70 5 2 16 chain 122070 chr7 159138663 + 78756117 78757481 L1PA4 6152 - 0 1366 30359 483 0 1 295 0 1 586 chain 56334 chr7 159138663 + 78785376 78786133 MER4E1 777 + 0 762 54946 270 17 13 67 1 0 188 20 28 15 1 3 178 chain 53731 chr7 159138663 + 78793474 78794241 MER4E1 777 + 0 764 56515 25 1 0 251 11 7 63 14 13 79 1 6 82 41 39 199 chain 42225 chr7 159138663 + 78797084 78797593 MER9a2 513 + 0 513 66368 352 0 3 138 1 2 18 chain 556883 chr7 159138663 + 78859110 78865127 L1PA2 6032 - 1 6023 619 161 1 3 176 0 1 1873 0 1 2480 0 1 1326 chain 5280 chr7 159138663 + 78925611 78925676 L1MA6 2487 + 2142 2207 192201 65 chain 4951 chr7 159138663 + 78946875 78947015 MER33 330 - 148 293 195692 31 11 13 9 2 0 26 40 45 21 chain 8851 chr7 159138663 + 78961179 78961273 L1PA2 6032 + 5936 6030 166370 94 chain 32220 chr7 159138663 + 78989160 78989589 MER75 514 - 0 426 80489 24 3 0 101 1 0 137 8 9 155 chain 72500 chr7 159138663 + 79008290 79009209 L1PA5 6144 - 16 876 47265 21 4 0 112 1 0 652 79 25 50 chain 35489 chr7 159138663 + 79009209 79009594 L1PA5 6144 + 4879 5264 75568 385 chain 59067 chr7 159138663 + 79021264 79022037 L1PA8 5853 - 94 858 53356 18 2 1 40 5 4 6 1 0 11 1 0 70 2 0 45 1 0 555 2 0 14 chain 204352 chr7 159138663 + 79073322 79075628 L1PA4 6152 + 3831 6137 18901 399 0 1 404 1 0 1502 chain 14353 chr7 159138663 + 79112952 79113108 L1PA2 6032 + 5876 6032 143367 156 chain 3096 chr7 159138663 + 79124308 79124347 MIR 256 + 112 151 222994 39 chain 29987 chr7 159138663 + 79129271 79129589 AluYb9 318 - 0 318 84846 318 chain 85542 chr7 159138663 + 79155711 79156786 L1PA7 6471 - 25 1098 41325 48 0 2 83 13 16 165 1 0 8 1 4 37 1 2 459 10 0 249 chain 17886 chr7 159138663 + 79191754 79192029 L1PA8 5853 - 0 268 133151 93 1 0 19 2 1 9 1 0 29 25 23 70 3 1 23 chain 30123 chr7 159138663 + 79198103 79198419 AluYb8 318 + 0 316 84404 316 chain 79586 chr7 159138663 + 79215055 79215992 L1PA6 6164 + 5167 6150 43788 77 0 23 47 0 1 661 7 29 145 chain 26654 chr7 159138663 + 79223980 79224356 THE1C 375 + 0 375 97474 115 9 29 9 20 0 197 1 0 25 chain 39972 chr7 159138663 + 79245605 79246128 LTR12_ 688 + 0 662 69359 316 0 3 35 0 103 91 1 34 80 chain 4040 chr7 159138663 + 79248498 79248548 MLT1D 503 + 437 487 206784 50 chain 164092 chr7 159138663 + 79291730 79293535 L1PA3long 6157 - 5 1810 22801 1805 chain 117623 chr7 159138663 + 79298850 79300407 THE1B-int 1605 + 13 1597 31917 417 1 26 148 1 0 84 27 27 548 0 2 138 4 5 59 1 0 4 0 1 52 0 2 6 1 0 53 1 0 12 chain 52928 chr7 159138663 + 79305858 79306507 L1PA7 6471 - 4 656 57066 8 2 0 87 0 3 162 1 3 4 1 0 63 0 1 321 chain 188308 chr7 159138663 + 79357264 79359375 L1PA4 6152 + 4022 6140 20209 622 0 1 653 0 4 130 0 1 605 0 1 101 chain 119904 chr7 159138663 + 79368434 79369865 LTR12C 1709 + 0 1709 31088 399 1 0 251 0 278 184 1 0 6 2 0 106 0 4 481 chain 58908 chr7 159138663 + 79377182 79378003 LTR12 884 + 0 884 53449 115 0 91 33 41 28 110 2 0 444 14 1 62 chain 3012 chr7 159138663 + 79377334 79377371 LTR12 884 + 33 71 215356 26 0 1 11 chain 75741 chr7 159138663 + 79380155 79381135 LTR5B 1012 - 17 1012 45626 268 0 4 234 1 0 107 18 17 223 1 14 128 chain 7295 chr7 159138663 + 79383738 79383827 L1PB1 5432 + 2568 2657 175477 89 chain 166996 chr7 159138663 + 79386608 79388979 L1PA8 5853 - 1 2325 22395 92 1 0 18 16 15 38 1 0 4 16 15 60 2 0 8 8 2 25 7 4 5 0 2 62 0 1 151 8 26 8 31 0 229 2 3 69 8 5 338 35 4 102 1 0 162 0 1 67 0 2 467 10 13 47 0 1 105 0 5 168 chain 172838 chr7 159138663 + 79388981 79391251 L1PA8 5853 + 1234 3501 21729 276 0 1 4 2 0 5 7 9 20 0 1 386 0 1 85 6 0 459 0 4 141 1 6 252 1 0 19 13 5 593 chain 112540 chr7 159138663 + 79396463 79397843 LTR12C 1709 - 0 1709 33523 481 0 4 28 0 366 131 41 0 79 1 0 196 0 1 423 chain 3488 chr7 159138663 + 79397103 79397144 LTR12C 1709 - 691 732 164202 41 chain 34051 chr7 159138663 + 79409250 79409641 L1PA5 6144 - 2 393 77543 391 chain 91637 chr7 159138663 + 79430910 79432026 MER11A 1151 + 0 1151 39076 79 0 8 141 1 0 66 0 11 61 0 1 338 0 6 126 7 0 7 1 15 274 0 3 15 chain 41083 chr7 159138663 + 79463712 79464186 L1PA4 6152 - 9 488 67790 299 0 5 175 chain 25309 chr7 159138663 + 79487993 79488285 L1P3 4156 - 353 644 103177 283 1 0 8 chain 53808 chr7 159138663 + 79488285 79488925 L1PA7 6471 + 5828 6466 56473 631 2 0 7 chain 4394 chr7 159138663 + 79488925 79488978 MER74C 455 - 397 450 202022 53 chain 4797 chr7 159138663 + 79492649 79492806 LTR73 568 + 409 568 197390 42 86 88 29 chain 59589 chr7 159138663 + 79493626 79494409 LTR12 884 - 0 884 53058 157 0 103 246 26 0 25 1 26 303 1 0 24 chain 40223 chr7 159138663 + 79504608 79505057 L1PA5 6144 - 3 452 68998 449 chain 58170 chr7 159138663 + 79505059 79505761 L1PA5 6144 + 4963 5675 53890 48 1 2 278 0 4 23 5 10 227 12 11 80 0 1 28 chain 49505 chr7 159138663 + 79514215 79514755 L1PA2 6032 - 0 540 59382 540 chain 148552 chr7 159138663 + 79514761 79516368 L1PA2 6032 + 3878 5485 24810 1607 chain 380070 chr7 159138663 + 79544395 79549030 L1P2 5180 + 2 4675 10752 148 2 1 49 1 0 47 3 2 212 1 0 52 29 29 245 1 0 6 1 0 1399 1 3 53 0 2 142 0 4 533 0 3 257 1 0 146 0 11 336 10 6 212 0 1 179 0 16 94 1 4 161 0 8 278 1 0 34 chain 68756 chr7 159138663 + 79563198 79563996 L1PA5 6144 + 5335 6138 48918 269 0 5 529 chain 26390 chr7 159138663 + 79566482 79566778 AluYk4 311 - 7 303 98451 296 chain 56916 chr7 159138663 + 79568488 79569103 L1PA2 6032 - 0 615 54582 615 chain 529054 chr7 159138663 + 79570417 79576545 L1PA5 6144 - 12 6144 4293 845 1 0 298 0 1 103 0 1 255 2 1 306 0 1 1585 0 1 395 1 2 904 0 1 273 2 6 76 0 1 590 6 1 486 chain 17624 chr7 159138663 + 79583879 79584102 L1PA17 2846 + 1685 1907 133922 170 1 0 52 chain 140535 chr7 159138663 + 79605588 79607488 LTR12C 1709 - 0 1709 26067 60 129 0 301 0 8 112 0 4 13 70 0 100 1 0 273 4 3 188 0 3 207 8 9 179 6 0 249 chain 6696 chr7 159138663 + 79605678 79605777 LTR12C 1709 - 92 191 136388 99 chain 2965 chr7 159138663 + 79606207 79606238 LTR12C 1709 - 428 459 225775 31 chain 22600 chr7 159138663 + 79607499 79607809 LTR8 732 - 408 732 117585 99 1 12 35 9 12 166 chain 112839 chr7 159138663 + 79624844 79626139 L1PA4 6152 - 8 1304 33425 90 1 0 781 0 1 401 0 1 22 chain 509901 chr7 159138663 + 79649153 79655528 L1PA7 6471 + 9 6467 6174 393 10 12 181 10 13 97 3 0 7 11 14 517 1 2 461 0 2 61 0 4 855 4 5 437 0 1 12 11 22 270 5 6 22 0 3 500 7 46 36 16 11 4 1 0 689 0 2 192 0 4 11 0 15 33 1 0 221 0 1 346 0 1 29 0 3 71 1 0 31 0 4 29 8 1 24 0 1 255 2 0 483 0 1 17 chain 34412 chr7 159138663 + 79655567 79656033 L1PA8 5853 + 5394 5853 77043 170 1 0 44 2 0 70 2 1 10 0 6 7 7 0 34 6 5 19 2 1 92 chain 26096 chr7 159138663 + 79673004 79673361 THE1B 368 - 0 360 99641 128 1 0 8 1 0 18 0 1 4 1 0 4 0 5 6 0 2 16 1 0 4 1 0 164 chain 22587 chr7 159138663 + 79706970 79707249 AluSp 311 + 10 302 117648 42 0 12 145 0 1 92 chain 30427 chr7 159138663 + 79742090 79742408 AluYb8 318 - 0 318 83601 318 chain 46291 chr7 159138663 + 79742981 79743601 LTR12_ 688 + 0 673 61778 31 0 2 88 0 25 15 24 0 10 3 27 158 0 1 152 0 17 114 0 8 25 chain 4880 chr7 159138663 + 79775913 79775969 MER5A1 166 - 50 106 196492 56 chain 5938 chr7 159138663 + 79808572 79808660 MER5A 189 - 14 96 185800 53 2 0 15 4 0 14 chain 8650 chr7 159138663 + 79849040 79849167 L1PA8 5853 - 0 125 167470 92 2 1 19 2 1 12 chain 4401 chr7 159138663 + 79910037 79910092 L1ME1 1623 + 1215 1270 201910 55 chain 25534 chr7 159138663 + 79922918 79923266 THE1B 368 - 12 361 102085 141 0 1 39 4 3 89 9 10 66 chain 98665 chr7 159138663 + 79955785 79957155 L1PA10 4194 + 2762 4150 37106 17 5 9 288 4 8 44 2 10 86 8 9 21 12 13 86 6 7 426 1 2 102 6 7 37 13 14 134 1 0 30 7 4 34 chain 71039 chr7 159138663 + 79966997 79967863 L1PA6 6164 - 3 867 47910 155 6 5 175 2 1 119 5 2 6 0 2 116 0 1 282 chain 10954 chr7 159138663 + 79967863 79967985 L1PA6 6164 + 5170 5292 156383 122 chain 46257 chr7 159138663 + 79981276 79981855 HERVL-int 5654 - 371 950 61806 39 0 1 402 4 3 134 chain 16857 chr7 159138663 + 79981911 79982173 MLT2A1 477 - 212 477 135952 34 35 39 15 0 2 5 4 1 169 chain 23740 chr7 159138663 + 80007352 80007710 L1PA13 3608 - 199 551 111833 13 2 0 5 1 2 54 1 0 54 10 8 105 5 4 36 1 0 71 chain 95234 chr7 159138663 + 80036106 80037328 L1PA8 5853 - 2 1228 38024 91 1 0 19 2 1 35 1 0 10 2 0 7 3 0 9 3 2 32 0 1 35 2 0 45 1 0 20 0 1 47 7 13 69 1 0 405 0 2 32 0 1 115 0 5 120 0 1 108 chain 24722 chr7 159138663 + 80051442 80051728 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MER11C 1089 + 21 1085 39672 227 0 1 340 29 10 17 1 2 467 chain 8925 chr7 159138663 + 80291911 80292045 L1PA8 5853 - 6 130 166005 87 1 0 20 11 2 15 chain 101993 chr7 159138663 + 80313347 80314518 L1PA6 6164 - 1048 2222 36265 148 0 2 389 0 1 634 chain 86413 chr7 159138663 + 80314518 80315541 L1PA6 6164 + 5110 6133 41000 900 0 1 6 1 0 116 chain 521843 chr7 159138663 + 80318064 80324435 L1PA7 6471 + 2 6455 4977 28 1 2 50 0 1 321 1 2 287 0 1 4 22 21 75 0 27 36 1 13 118 8 7 218 0 4 147 1 2 116 0 1 681 1 6 82 1 2 241 0 2 329 0 7 22 0 2 305 4 3 331 4 1 47 0 4 22 0 3 888 0 3 8 0 4 786 1 0 4 0 1 353 1 8 639 0 1 30 17 14 7 0 3 133 chain 73668 chr7 159138663 + 80341498 80342357 L1PA5 6144 - 0 860 46699 33 1 0 307 1 0 230 0 2 104 0 1 83 0 1 89 1 0 10 chain 540967 chr7 159138663 + 80342423 80348451 L1PA3long 6157 + 0 6152 2666 153 1 2 621 0 128 3968 10 0 416 0 4 733 8 9 118 chain 39501 chr7 159138663 + 80363954 80364581 L1PA15 4387 + 3482 4104 70020 7 0 5 6 5 0 102 10 11 117 5 6 72 6 5 4 1 0 10 4 0 6 0 2 56 19 16 26 1 0 149 8 9 13 chain 34894 chr7 159138663 + 80364584 80365091 LTR10D 510 - 0 510 76348 42 0 4 45 2 0 145 5 4 27 17 18 126 1 0 4 2 1 15 5 1 6 0 7 65 chain 3639 chr7 159138663 + 80379636 80379726 L1MB3 1562 + 1132 1222 212976 21 16 17 22 11 10 20 chain 142222 chr7 159138663 + 80491094 80493689 L1PB1 5432 + 3149 5413 25776 426 0 3 68 3 0 7 5 9 287 9 7 156 0 1 267 0 1 15 0 6 29 1 0 54 6 7 18 119 205 97 10 1 290 1 2 11 392 4 18 27 21 10 3 1 48 21 19 30 2 1 12 1 0 16 3 0 7 13 5 15 28 23 23 2 1 21 1 0 13 1 0 9 chain 7752 chr7 159138663 + 80500857 80500980 MER85 139 - 0 138 172592 12 7 12 13 3 13 88 chain 57576 chr7 159138663 + 80555930 80556678 LTR12 884 - 0 884 54197 273 13 46 73 7 0 20 0 22 50 0 22 17 0 66 295 chain 30616 chr7 159138663 + 80558636 80559020 MLT2A1 477 - 92 477 83177 180 0 3 20 0 1 11 4 1 169 chain 93274 chr7 159138663 + 80581144 80582260 L1PA6 6164 - 2 1130 38574 8 2 0 135 13 27 339 0 1 340 1 0 278 chain 19613 chr7 159138663 + 80582260 80582475 L1PA6 6164 + 4808 5023 127830 215 chain 32843 chr7 159138663 + 80591166 80591601 LOR1b 457 + 0 449 79471 29 0 11 212 0 1 70 5 7 119 chain 14546 chr7 159138663 + 80617647 80617821 THE1C 375 - 198 375 142738 69 0 1 39 0 2 66 chain 41832 chr7 159138663 + 80625758 80626247 L1PA7 6471 + 5805 6294 66848 489 chain 13667 chr7 159138663 + 80626248 80626422 L1PA7 6471 + 6297 6469 145716 10 0 1 151 3 0 10 chain 54231 chr7 159138663 + 80663327 80664034 LTR12_ 688 + 0 688 56204 121 0 25 21 1 0 12 41 0 334 1 0 98 1 0 77 chain 146612 chr7 159138663 + 80671843 80673661 LTR12C 1709 + 0 1709 25070 263 0 1 573 120 0 80 0 6 189 1 0 5 3 1 106 0 4 6 0 3 472 chain 9707 chr7 159138663 + 80672679 80672799 LTR12C 1709 + 877 997 109717 120 chain 9168 chr7 159138663 + 80675221 80675360 THE1D 372 + 250 372 164714 5 1 0 26 16 0 91 chain 299111 chr7 159138663 + 80683706 80688440 L1PA3long 6157 + 2837 6147 13473 835 0 1 1024 0 1 363 1427 0 245 0 1 840 chain 117840 chr7 159138663 + 80685932 80687355 LTR12C 1709 - 0 1709 31853 481 0 4 106 3 1 5 1 0 101 0 278 531 6 13 189 chain 3116 chr7 159138663 + 80690079 80690113 MER3 215 + 174 208 222609 34 chain 26453 chr7 159138663 + 80702432 80702721 AluYa5 310 + 15 301 98225 108 3 0 178 chain 4080 chr7 159138663 + 80767593 80767764 MER3 215 - 4 182 206185 13 0 1 7 96 0 12 1 103 42 chain 114325 chr7 159138663 + 80770897 80772313 LTR12C 1709 + 0 1709 32988 12 0 16 183 0 9 244 0 1 4 1 0 185 0 278 101 0 1 78 1 0 5 3 1 106 11 4 399 1 0 82 chain 74501 chr7 159138663 + 80775165 80776149 L1PA8 5853 - 79 1066 46275 14 1 0 19 2 1 33 6 11 8 1 0 9 1 0 71 2 0 44 1 0 306 0 1 155 1 4 14 0 2 73 2 0 115 0 1 106 chain 42758 chr7 159138663 + 80776247 80776722 L1PA3long 6157 + 5681 6156 65713 475 chain 35491 chr7 159138663 + 80783740 80784376 MER4A 717 + 0 700 75566 116 3 0 5 7 10 201 12 3 63 3 0 9 5 21 47 116 175 25 0 1 24 chain 42869 chr7 159138663 + 80792125 80792679 MLT2A2 560 + 0 560 65573 127 5 1 65 18 20 301 0 8 38 chain 30558 chr7 159138663 + 80801700 80802018 AluYb9 318 + 0 318 83321 318 chain 205537 chr7 159138663 + 80806182 80808605 L1PA6 6164 - 2 2456 18822 18 0 18 122 1 2 663 1 2 308 6 20 366 3 0 935 chain 2971 chr7 159138663 + 80811145 80811178 MSTB 430 + 375 408 225643 33 chain 54608 chr7 159138663 + 80811339 80812044 LTR17 781 - 0 771 55962 28 0 22 128 0 49 21 2 1 11 1 0 52 3 0 45 3 4 93 1 0 317 chain 3883 chr7 159138663 + 80823483 80823528 MLT1C 463 + 369 414 209128 45 chain 123662 chr7 159138663 + 80851544 80853119 THE1B-int 1605 + 0 1600 29821 305 0 1 124 1 26 553 4 3 134 5 4 48 5 6 396 chain 4352 chr7 159138663 + 80853474 80853527 L1MA6 2487 - 1399 1452 202558 53 chain 31369 chr7 159138663 + 80875592 80875997 L1PREC2 3366 - 1427 1833 81875 44 0 1 5 1 0 124 1 2 230 chain 5858 chr7 159138663 + 80877339 80877414 MER2 342 + 140 215 186600 75 chain 49184 chr7 159138663 + 80915362 80915934 L1PA5 6144 + 5572 6144 59607 572 chain 16548 chr7 159138663 + 80944636 80944829 L1PA3long 6157 - 0 192 136805 20 1 0 172 chain 14739 chr7 159138663 + 80966074 80966242 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2 66 2 0 295 0 10 36 1 16 324 0 4 28 1 0 3 4 0 10 chain 123319 chr7 159138663 + 81138876 81140476 THE1A-int 1579 + 0 1568 29940 37 0 1 42 6 5 488 33 5 159 6 7 139 0 3 546 1 0 130 7 0 6 chain 27177 chr7 159138663 + 81140480 81140834 THE1A 353 + 0 353 95674 109 2 1 119 0 1 4 2 1 118 chain 25103 chr7 159138663 + 81148607 81148968 L1PA8 5853 + 5499 5853 104271 110 5 3 64 6 5 13 2 0 46 2 1 19 6 5 88 chain 8557 chr7 159138663 + 81215591 81215710 MER2 342 + 124 246 167977 11 4 7 104 chain 25403 chr7 159138663 + 81224521 81224820 AluSg7 307 - 7 307 102669 173 0 1 126 chain 13528 chr7 159138663 + 81247362 81247547 HSMAR2 1300 - 94 279 146252 114 1 0 45 7 8 18 chain 58846 chr7 159138663 + 81260937 81261597 L1PA4 6152 + 5489 6152 53490 232 4 7 424 chain 3294 chr7 159138663 + 81298851 81299237 LTR33A_ 513 + 125 508 219097 21 219 215 21 97 98 28 chain 14943 chr7 159138663 + 81326137 81326479 L1PB1 5432 + 5114 5424 141491 20 1 0 13 16 11 11 2 0 51 2 1 11 12 11 37 1 0 16 3 0 7 14 5 16 11 8 14 2 0 20 5 4 21 1 0 13 1 0 16 1 0 4 chain 118240 chr7 159138663 + 81414101 81415400 L1PA2 6032 - 0 1300 31713 127 0 1 25 0 6 7 5 0 709 1 0 425 chain 502527 chr7 159138663 + 81453395 81459484 L1PA6 6164 - 2 6164 6700 6 4 0 162 1 2 668 0 7 106 7 0 614 0 34 292 5 1 317 0 1 723 0 13 418 1 5 393 0 3 73 9 1 337 6 8 156 0 1 151 6 19 393 5 4 103 1 7 39 0 1 49 1 0 4 0 1 107 10 4 115 0 17 240 1 0 450 0 1 116 chain 69511 chr7 159138663 + 81472838 81473755 L1PA7 6471 - 12 899 48604 128 22 24 155 0 1 21 39 0 424 0 3 78 0 3 50 chain 57944 chr7 159138663 + 81473766 81474489 L1PA7 6471 + 4842 5554 54007 132 0 1 44 14 1 126 5 6 159 0 1 20 1 0 222 chain 44278 chr7 159138663 + 81487973 81488525 LTR10F 562 - 0 562 63848 330 15 14 17 0 11 190 chain 53235 chr7 159138663 + 81493812 81494401 L1PA5 6144 - 0 589 56870 589 chain 126915 chr7 159138663 + 81509193 81510843 L1P3 4156 + 2474 4139 28836 42 0 4 178 1 0 11 8 5 172 9 13 194 0 4 328 7 8 67 1 0 46 0 4 17 0 5 74 1 2 452 9 7 6 1 0 26 chain 52735 chr7 159138663 + 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1 0 44 2 0 49 1 0 21 2 1 8 0 6 47 2 1 21 1 0 14 0 1 75 chain 47812 chr7 159138663 + 81684695 81685231 L1PA4 6152 + 5607 6143 60615 536 chain 39894 chr7 159138663 + 81689023 81689455 L1PA4 6152 + 5702 6134 69463 432 chain 20142 chr7 159138663 + 81704199 81704439 L1PA7 6471 - 20 260 126702 240 chain 29336 chr7 159138663 + 81728754 81729064 AluYa5 310 - 0 310 87368 310 chain 21900 chr7 159138663 + 81766910 81767185 AluY 311 + 5 292 120620 118 11 3 113 0 20 33 chain 23776 chr7 159138663 + 81870005 81870294 AluSc 308 + 9 291 111614 22 6 0 226 1 0 34 chain 5831 chr7 159138663 + 81919394 81919474 MADE1 96 + 0 96 186856 46 1 17 33 chain 23465 chr7 159138663 + 81919918 81920203 AluSp 311 - 18 303 113288 285 chain 46459 chr7 159138663 + 81925078 81925585 L1PA3long 6157 + 5650 6157 61633 507 chain 22676 chr7 159138663 + 81962646 81963006 THE1B 368 - 0 368 117183 4 1 0 124 1 0 10 1 0 13 32 40 8 1 0 27 9 13 129 chain 14185 chr7 159138663 + 81987021 81987179 L1PA4 6152 + 5985 6143 143933 158 chain 7383 chr7 159138663 + 81996526 81996615 L1PA16 3655 - 567 658 174889 14 0 2 75 chain 21550 chr7 159138663 + 82015791 82016054 AluSp 311 + 11 287 121963 34 0 14 73 1 0 155 chain 40725 chr7 159138663 + 82029311 82029752 L1PA3long 6157 - 1293 1734 68273 441 chain 116101 chr7 159138663 + 82029752 82031027 L1PA3long 6157 + 4877 6152 32417 1275 chain 75061 chr7 159138663 + 82035208 82036110 L1PA5 6144 - 4 899 45987 9 3 0 100 1 0 34 0 1 170 3 0 528 21 20 33 chain 3503 chr7 159138663 + 82088013 82088052 MSTA 426 - 320 359 215309 39 chain 12440 chr7 159138663 + 82089268 82089455 MER30 238 - 0 198 150495 48 3 0 3 3 0 60 4 0 7 0 21 59 chain 2938 chr7 159138663 + 82093025 82093056 MER51A 677 - 282 313 226380 31 chain 169196 chr7 159138663 + 82115366 82117428 L1PA7 6471 - 9 2075 22153 4 1 0 146 4 5 686 1 0 205 1 0 747 0 4 26 0 1 30 0 2 158 4 3 49 chain 296088 chr7 159138663 + 82118143 82122474 L1P2 5180 - 1102 5177 13641 378 8 10 398 1 0 501 1 5 241 4 5 350 0 2 183 0 1 955 1 0 4 0 1 73 12 32 137 0 15 49 21 0 172 53 0 4 23 0 38 25 19 59 19 0 76 228 52 58 36 35 16 0 4 6 4 0 50 1 0 32 1 0 51 17 20 12 2 0 31 chain 95119 chr7 159138663 + 82128757 82130076 LTR12C 1709 + 0 1709 38059 24 51 61 206 4 5 42 0 43 83 8 7 248 0 118 197 0 125 56 20 13 164 0 102 133 1 0 82 chain 24687 chr7 159138663 + 82143486 82143789 AluYk4 311 + 0 301 106515 132 2 0 74 5 4 49 1 2 40 chain 4169 chr7 159138663 + 82160216 82160337 MLT1H1 527 - 389 512 204987 8 0 1 36 57 58 20 chain 5777 chr7 159138663 + 82186833 82187040 L1PA15-16 3068 + 2308 2485 187380 36 4 0 13 84 64 21 2 0 15 6 3 18 1 0 7 chain 21279 chr7 159138663 + 82203395 82203677 THE1D-int 1627 - 2 287 122932 32 0 3 13 1 0 17 1 2 218 chain 18197 chr7 159138663 + 82204231 82204559 THE1D 372 - 25 372 132337 101 64 80 27 4 5 55 4 5 42 1 0 17 0 2 13 chain 367706 chr7 159138663 + 82209018 82213620 L1PA7 6471 - 5 4675 11160 404 0 5 64 1 4 360 0 6 149 10 24 285 0 1 51 3 0 300 0 2 130 4 12 355 0 5 87 0 9 165 0 1 37 13 10 212 8 18 217 0 4 46 1 0 53 8 13 156 45 49 133 0 1 208 0 4 253 13 0 240 1 0 128 1 0 97 0 6 30 0 2 97 1 0 85 0 1 151 chain 208534 chr7 159138663 + 82239365 82241652 L1PA3long 6157 + 3869 6157 18603 1517 0 2 439 1 0 330 chain 487380 chr7 159138663 + 82262415 82277880 L1PA7 6471 + 0 6469 7463 207 2 0 5 0 2 26 0 10 359 3 4 134 1 0 7 0 11 5 1 0 49 1 0 4 0 1 1131 1 0 147 0 1 450 0 1 120 0 1 204 12 96 111 11 15 11 0 1 86 0 1 15 39 40 191 0 4 53 2 6 97 0 1 288 9139 0 36 2 0 18 0 1 41 0 2 681 0 2 137 0 5 416 5 14 351 0 4 18 1 2 177 1 0 669 chain 53631 chr7 159138663 + 82266192 82266889 LTR12_ 688 + 0 688 56599 25 5 0 65 25 0 63 1 25 191 1 0 73 1 0 71 1 0 175 chain 370934 chr7 159138663 + 82266910 82272034 HERV9-int 5642 + 0 5642 11059 162 0 4 430 13 12 187 1 0 71 85 0 35 12 97 29 81 1 77 4 1 378 12 23 633 1 3 76 7 0 209 0 1 581 7 942 977 0 1 96 3 4 199 1 0 228 3 1 12 315 0 27 17 21 7 1 0 56 4 3 14 28 5 19 4 0 3 2 0 17 chain 54207 chr7 159138663 + 82274647 82275327 LTR12_ 688 + 1 688 56226 15 9 8 67 25 0 277 0 1 144 1 0 32 0 33 110 chain 447197 chr7 159138663 + 82279170 82284300 L1PA4 6152 + 0 6143 8842 59 7 8 514 0 3 5 3 0 147 1 0 335 0 1 1079 0 6 75 1 1005 279 1 0 1148 0 1 1336 0 1 128 0 1 12 chain 82335 chr7 159138663 + 82287804 82288859 MER11C 1089 - 26 1089 42614 325 0 1 34 2 1 8 0 4 91 10 8 19 38 40 146 1 0 65 0 4 65 0 1 251 chain 43727 chr7 159138663 + 82329283 82329888 MER41B 635 + 0 635 64534 125 1 2 264 3 11 48 1 17 82 12 17 69 chain 68049 chr7 159138663 + 82349273 82350124 THE1A-int 1579 - 0 847 49226 261 11 0 252 0 7 327 chain 11219 chr7 159138663 + 82372160 82372285 L1P3 4156 - 396 521 155347 125 chain 14649 chr7 159138663 + 82406272 82406458 L1PREC2 3366 - 2193 2380 142425 94 0 1 92 chain 12173 chr7 159138663 + 82410668 82410827 L1PA8A 6298 - 11 169 151528 92 5 4 62 chain 66678 chr7 159138663 + 82415924 82416711 L1PA7 6471 - 15 808 49797 45 0 2 379 4 8 359 chain 3190 chr7 159138663 + 82455363 82455409 L1MA3 4352 - 24 68 221097 14 1 0 26 1 0 4 chain 42976 chr7 159138663 + 82481544 82482083 MLT2A2 560 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82622074 L1PA8 5853 + 5663 5853 149196 16 1 0 14 12 11 36 2 1 19 1 0 93 chain 4877 chr7 159138663 + 82629699 82629757 L1MCa 1829 + 1431 1488 196521 53 1 0 4 chain 544979 chr7 159138663 + 82653413 82659432 L1PA3long 6157 + 4 6152 2077 148 0 1 628 3 133 4393 3 1 844 chain 3996 chr7 159138663 + 82681494 82681546 L1MC2 1988 + 1849 1906 207437 46 0 5 6 chain 30975 chr7 159138663 + 82716183 82716548 L1PA5 6144 + 5783 6144 82559 224 5 1 136 chain 8038 chr7 159138663 + 82750344 82750444 AluY 311 + 27 128 170823 81 1 2 18 chain 20552 chr7 159138663 + 82753353 82753686 AluYk4 311 + 11 311 125469 19 13 5 7 0 6 78 7 0 121 42 5 29 0 13 17 chain 96954 chr7 159138663 + 82754023 82755219 SVA_B 1603 + 0 1603 37572 21 15 0 15 24 8 20 5 10 445 3 233 75 0 201 135 0 4 430 2 0 6 chain 18628 chr7 159138663 + 82768072 82768298 L1PA7 6471 + 6239 6466 131141 89 0 1 137 chain 3914 chr7 159138663 + 82796594 82796674 MLT2B1 522 + 271 401 208642 19 21 71 40 chain 4063 chr7 159138663 + 82798229 82798274 L1PA3long 6157 + 6112 6157 206446 45 chain 22870 chr7 159138663 + 82847393 82847734 THE1A 353 + 0 341 116228 29 0 7 46 2 0 6 19 17 5 1 0 9 2 1 158 1 0 63 chain 124859 chr7 159138663 + 82847749 82849314 THE1A-int 1579 + 0 1572 29437 33 1 0 4 0 1 75 1 4 421 11 12 444 0 2 278 0 1 297 chain 26962 chr7 159138663 + 82849321 82849663 THE1A 353 + 0 341 96402 109 2 1 231 chain 88527 chr7 159138663 + 82851786 82852774 L1PA4 6152 - 373 1365 40174 471 0 4 517 chain 32589 chr7 159138663 + 82852774 82853146 L1PA4 6152 + 5780 6152 79871 354 0 3 9 3 0 6 chain 12690 chr7 159138663 + 82868060 82868363 THE1B 368 - 23 367 149487 94 42 53 24 3 4 29 68 97 43 chain 21602 chr7 159138663 + 82883088 82883350 AluY 311 + 38 301 121758 124 0 1 138 chain 21172 chr7 159138663 + 82894719 82894973 L1PA8A 6298 + 5998 6252 123301 254 chain 22502 chr7 159138663 + 82920330 82920579 L1PA4 6152 - 1688 1937 115426 249 chain 148956 chr7 159138663 + 82920579 82922259 L1PA4 6152 + 4467 6151 24763 168 1 0 669 0 4 64 0 1 445 1 0 322 0 1 10 chain 57544 chr7 159138663 + 82928060 82928692 L1PA2 6032 + 5400 6032 54214 632 chain 28937 chr7 159138663 + 82946477 82946782 AluYg6 310 + 0 305 89282 305 chain 25341 chr7 159138663 + 82967105 82967479 THE1C 375 - 0 375 103014 25 1 0 152 22 19 33 0 4 48 6 7 87 chain 523667 chr7 159138663 + 82970634 82977065 L1PA7 6471 + 0 6469 4794 187 10 11 189 9 0 24 0 1 1026 1 4 310 0 1 4 1 3 6 4 0 404 0 1 468 5 8 403 0 2 44 0 4 384 0 2 6 2 0 346 19 20 528 6 8 97 0 1 70 0 1 11 1 0 234 1 9 78 0 1 724 1 4 251 1 2 54 0 18 508 2 0 12 chain 30344 chr7 159138663 + 82993191 82993509 AluYb9 318 - 0 318 83800 318 chain 24904 chr7 159138663 + 83059792 83060159 L1PA8 5853 + 5492 5853 105317 72 1 0 46 2 0 72 1 0 11 1 0 6 4 5 32 8 7 17 8 7 86 chain 29399 chr7 159138663 + 83064021 83064328 AluYa5 310 - 3 310 87079 307 chain 40957 chr7 159138663 + 83088983 83089434 LTR7 482 + 0 482 67967 264 0 31 187 chain 291493 chr7 159138663 + 83089436 83093009 HERVH-int 3825 + 0 3816 13932 212 0 11 17 0 5 290 1 54 14 7 1 14 1 0 12 4 1 6 65 0 54 0 20 18 2 1 49 1 0 444 15 0 195 0 1 261 6 36 290 0 4 1032 1 2 76 8 218 478 chain 38241 chr7 159138663 + 83094252 83094690 LTR7 482 + 0 473 71785 38 0 2 46 0 2 147 0 31 207 chain 20339 chr7 159138663 + 83102028 83102405 THE1C 375 + 0 374 126111 14 2 0 49 22 23 100 7 8 18 19 21 17 6 0 77 17 18 29 chain 43878 chr7 159138663 + 83143171 83143749 MER41A 554 + 0 554 64359 325 7 0 81 0 2 106 19 0 40 chain 29887 chr7 159138663 + 83148289 83148617 L1PA3long 6157 - 0 328 85141 328 chain 78758 chr7 159138663 + 83181488 83182576 MER11A 1151 + 0 1151 44165 55 0 99 76 1 0 64 4 0 149 0 1 91 0 1 101 2 0 43 0 1 129 0 26 26 43 0 22 18 0 36 0 1 9 0 1 49 5 6 165 chain 26418 chr7 159138663 + 83194172 83194473 L1P3 4156 + 3465 3766 98344 301 chain 28043 chr7 159138663 + 83194483 83194819 L1PA8A 6298 + 5953 6290 92847 108 0 1 228 chain 77082 chr7 159138663 + 83233947 83235338 L1PA8 5853 - 1 1071 44925 92 1 0 19 2 1 50 6 5 6 1 0 69 2 0 46 8 7 40 0 3 445 313 0 60 8 5 80 1 0 95 0 1 4 1 0 42 chain 39457 chr7 159138663 + 83235667 83236091 L1HS 6032 + 5608 6032 70077 424 chain 148986 chr7 159138663 + 83249671 83251639 L1PA11 4918 + 2527 4504 24756 350 0 3 780 1 0 106 0 4 126 0 1 211 0 1 185 6 8 29 9 11 51 2 1 13 4 5 61 6 4 10 2 1 16 chain 502338 chr7 159138663 + 83253076 83259558 L1PA7 6471 - 33 6468 6708 19 0 1 109 1 2 531 0 1 73 0 1 84 2 0 637 0 1 270 0 14 23 7 11 34 0 1 556 4 5 65 1 0 129 10 11 150 2 1 254 1 2 433 0 3 240 98 0 82 3 4 50 15 0 162 0 1 4 5 4 366 0 2 72 0 1 9 4 29 20 3 4 148 0 1 49 0 1 87 6 10 497 21 1 166 1 0 5 0 1 120 0 17 256 10 13 190 2 3 140 18 20 61 2 3 175 chain 17276 chr7 159138663 + 83266771 83267096 THE1C 375 + 0 336 134844 15 2 0 32 0 6 17 15 16 9 0 1 28 20 0 7 1 21 30 4 5 16 16 20 113 chain 7145 chr7 159138663 + 83297565 83297751 MER65A 464 - 278 455 176446 29 5 4 29 50 48 23 8 0 27 0 2 15 chain 130685 chr7 159138663 + 83302452 83304054 LTR12C 1709 + 0 1709 27928 436 0 1 50 0 6 157 0 119 68 1 0 75 0 2 114 18 2 82 1 0 5 3 1 106 0 4 101 4 0 176 1 0 204 chain 54070 chr7 159138663 + 83304066 83304768 LTR17 781 - 27 781 56308 13 14 36 14 8 18 97 0 1 248 1 0 280 0 20 27 chain 521038 chr7 159138663 + 83340742 83346840 L1PA5 6144 - 4 6139 5049 732 1 0 24 0 22 192 1 0 913 0 1 358 0 4 75 22 0 5 0 21 60 3 1 412 0 2 676 0 2 122 1 7 269 1 2 792 0 4 379 1 2 819 1 0 239 chain 9556 chr7 159138663 + 83363540 83363686 L1PA8 5853 - 0 143 162803 93 1 0 11 13 11 28 chain 508562 chr7 159138663 + 83373058 83378686 L1PA3long 6157 - 0 6151 6273 95 21 10 1648 0 2 1341 0 1 1645 0 4 162 0 1 624 0 526 92 chain 26681 chr7 159138663 + 83383631 83384002 THE1B 368 - 0 368 97383 159 11 9 16 1 0 5 5 6 4 1 0 169 chain 15322 chr7 159138663 + 83385831 83386032 L1PA8 5853 - 0 198 140419 93 1 0 19 2 1 58 1 0 27 chain 3382 chr7 159138663 + 83390278 83390428 MER8 282 + 102 256 217428 19 75 80 31 10 9 15 chain 12096 chr7 159138663 + 83402919 83403118 L1PA8 5853 + 5651 5847 151807 31 1 0 6 8 7 34 1 2 9 2 1 18 3 2 86 chain 40501 chr7 159138663 + 83403233 83403742 L1PA6 6164 + 5658 6161 68587 26 1 0 305 2 4 135 9 0 23 0 2 8 chain 8989 chr7 159138663 + 83433644 83433913 MLT1B 390 - 11 277 165665 86 134 132 27 1 0 21 chain 32174 chr7 159138663 + 83453214 83453638 L1PA8A 6298 - 8 434 80571 104 7 6 193 3 0 65 0 6 52 chain 3977 chr7 159138663 + 83456061 83456106 MADE1 96 + 1 46 207721 45 chain 16499 chr7 159138663 + 83458724 83458945 L1PA7 6471 - 4 224 136923 152 18 17 51 chain 27472 chr7 159138663 + 83463000 83463407 LTR7 482 - 0 482 94739 158 0 10 19 1 32 14 9 5 19 0 1 109 26 64 39 1 0 12 chain 5610 chr7 159138663 + 83475761 83475831 MER3 215 + 97 167 188978 70 chain 10762 chr7 159138663 + 83516641 83517020 L1MA6 2487 - 102 386 157145 6 3 0 40 216 125 84 1 0 29 chain 362383 chr7 159138663 + 83519605 83523631 L1PA4 6152 - 62 4094 11310 622 1 2 164 0 4 2854 0 1 385 chain 13284 chr7 159138663 + 83538489 83538774 L1PB1 5432 - 9 270 147153 32 1 0 21 1 0 20 36 31 24 12 0 15 1 0 38 6 5 16 2 1 52 2 0 6 chain 21084 chr7 159138663 + 83575805 83576060 AluY 311 + 30 286 123602 102 4 5 149 chain 26786 chr7 159138663 + 83596024 83596326 AluSp 311 - 9 311 97024 302 chain 20681 chr7 159138663 + 83609697 83609940 AluSc 308 + 57 300 125031 243 chain 544255 chr7 159138663 + 83618652 83624658 L1PA2 6032 - 20 6032 2178 2872 0 2 553 5 0 8 3 9 189 0 1 297 0 2 1823 2 1 181 1 2 72 chain 540706 chr7 159138663 + 83679036 83685045 L1PA3long 6157 - 4 6157 2708 544 0 6 2426 1 0 464 5 0 8 3 9 1286 0 9 497 9 137 614 0 1 152 chain 544554 chr7 159138663 + 83691725 83697752 L1PA2 6032 + 3 6032 2134 68 1 2 183 1 0 199 3 4 2109 0 1 3297 5 0 8 0 5 153 chain 105541 chr7 159138663 + 83708507 83709673 L1PA3long 6157 + 4985 6152 35363 978 0 1 188 chain 29313 chr7 159138663 + 83709876 83710187 AluYa5 310 - 0 310 87491 184 1 0 126 chain 11644 chr7 159138663 + 83735608 83735775 Tigger3a 397 + 148 323 153726 11 2 12 24 1 0 48 1 0 80 chain 53938 chr7 159138663 + 83750533 83751483 L1PA5 6144 - 5 644 56407 91 0 1 17 1 0 71 1 0 154 0 1 75 311 0 229 chain 28312 chr7 159138663 + 83750954 83751254 AluYa5 310 - 11 310 91898 173 1 0 126 chain 19452 chr7 159138663 + 83751503 83751734 L1PA5 6144 + 5245 5476 128812 48 2 1 134 0 1 47 chain 212118 chr7 159138663 + 83779558 83782017 L1PA3long 6157 + 13 6157 18350 4 0 1 134 7 8 204 5 6 398 8 136 666 0 3549 191 0 4 838 0 1 4 chain 24889 chr7 159138663 + 83793158 83793450 AluSp 311 - 9 301 105412 292 chain 24722 chr7 159138663 + 83795910 83796221 AluSg4 309 + 4 304 106315 122 4 0 145 7 0 33 chain 444118 chr7 159138663 + 83869957 83875544 L1PA7 6471 - 34 6455 8927 104 7 8 550 0 1 157 1 0 115 32 10 543 1 0 273 0 4 13 0 2 172 24 13 301 18 0 59 0 1 39 0 4 227 6 8 335 4 0 83 0 2 11 0 50 252 0 4 137 0 1 68 0 4 149 0 1 96 1 3 127 0 1 78 3 0 8 0 3 65 0 2 87 10 9 222 1 0 147 1 0 405 0 241 480 6 5 32 18 17 43 0 573 76 chain 38484 chr7 159138663 + 83928024 83928536 MLT2A2 560 + 0 505 71465 204 0 1 107 1 2 128 11 2 61 chain 28772 chr7 159138663 + 83947633 83947937 AluYa5 310 - 6 310 90009 304 chain 9290 chr7 159138663 + 83958298 83958406 L1PA7 6471 - 13 119 164110 48 2 0 58 chain 291880 chr7 159138663 + 83986452 83989843 L1PA5 6144 - 5 3384 13913 137 11 0 11 0 5 1635 0 4 50 0 7 20 18 6 588 0 1 691 4 0 123 0 1 92 3 0 8 chain 37931 chr7 159138663 + 84007589 84008036 L1PA7 6471 + 6024 6469 72234 260 0 1 174 3 0 10 chain 541287 chr7 159138663 + 84032280 84038370 L1PA4 6152 + 54 6151 2623 478 0 1 202 0 1 2134 4 1 818 2 0 277 0 1 376 0 8 751 0 1 124 0 1 590 1 0 333 chain 32934 chr7 159138663 + 84050025 84050417 L1P3 4156 - 409 804 79315 310 0 3 82 chain 80023 chr7 159138663 + 84051158 84052127 L1P3 4156 - 17 986 43577 24 2 1 9 2 0 182 0 1 96 1 0 389 0 3 264 chain 2949 chr7 159138663 + 84055227 84055290 L1PB3 3668 + 3505 3566 226086 22 20 18 21 chain 81568 chr7 159138663 + 84062410 84063408 L1PA7 6471 - 17 1019 42944 482 1 0 255 15 17 84 0 3 161 chain 27949 chr7 159138663 + 84082555 84082851 AluYf4 310 - 14 310 93170 296 chain 18305 chr7 159138663 + 84118344 84118685 THE1D 372 - 15 372 132064 119 61 78 74 18 20 15 3 0 51 chain 407832 chr7 159138663 + 84147055 84151733 L1PA5 6144 + 1354 6047 9854 487 0 1 363 3 6 1194 6 8 534 1 0 305 0 3 706 0 1 30 1 3 295 0 5 409 7 6 337 chain 7287 chr7 159138663 + 84152421 84152502 L1PA6 6164 + 6079 6160 175533 81 chain 8078 chr7 159138663 + 84184687 84184773 L1PA3long 6157 - 0 86 170603 86 chain 89300 chr7 159138663 + 84210951 84211970 L1PA5 6144 + 5125 6141 39886 168 0 1 440 1 0 397 3 0 10 chain 66512 chr7 159138663 + 84219765 84220537 L1PA5 6144 - 2 771 49861 7 4 0 144 1 2 616 chain 47551 chr7 159138663 + 84221794 84222366 L1P3 4156 - 607 1177 60809 49 1 0 479 1 0 42 chain 82781 chr7 159138663 + 84222387 84223396 L1PA7 6471 + 5461 6469 42425 101 0 1 52 1 0 34 0 1 60 1 0 21 4 3 735 chain 25158 chr7 159138663 + 84308850 84309145 AluY 311 + 0 303 103963 48 9 17 238 chain 4536 chr7 159138663 + 84332480 84332530 MER121 330 + 128 178 200396 50 chain 105696 chr7 159138663 + 84335751 84336895 L1PA2 6032 - 626 1770 35331 1144 chain 57898 chr7 159138663 + 84336895 84337519 L1PA2 6032 + 5408 6032 54037 624 chain 40582 chr7 159138663 + 84339974 84340415 L1PA2 6032 + 5591 6032 68465 441 chain 250943 chr7 159138663 + 84355219 84358368 L1PA7 6471 + 3311 6470 16183 186 4 0 312 0 4 126 0 10 633 0 3 81 0 8 442 2 0 103 0 5 382 0 1 11 13 0 501 4 0 17 8 9 175 2 3 147 chain 57222 chr7 159138663 + 84359702 84360358 L1PA5 6144 - 12 674 54388 316 0 6 340 chain 36260 chr7 159138663 + 84360418 84360830 L1PA3long 6157 - 0 413 74549 338 0 1 74 chain 73105 chr7 159138663 + 84363144 84364088 L1PA8A 6298 + 5340 6291 46976 149 7 10 312 14 10 53 0 6 87 2 0 99 0 4 221 chain 8642 chr7 159138663 + 84407025 84407134 L1PA7 6471 + 5547 5655 167526 76 1 0 32 chain 63221 chr7 159138663 + 84407134 84407961 L1PA7 6471 + 5656 6464 51354 689 38 1 66 1 19 33 chain 6918 chr7 159138663 + 84408794 84408880 L1PREC2 3366 - 1508 1594 178057 86 chain 32073 chr7 159138663 + 84408930 84409386 L1PBa 3878 + 1518 1978 80733 49 30 29 5 0 2 19 0 1 10 0 1 330 1 2 12 chain 8190 chr7 159138663 + 84421991 84422096 L1PA7 6471 + 6197 6302 170003 105 chain 12737 chr7 159138663 + 84422096 84422242 L1PA7 6471 + 6313 6459 149304 146 chain 8755 chr7 159138663 + 84431859 84431959 L1PA4 6152 + 5938 6038 166888 100 chain 10206 chr7 159138663 + 84431959 84432072 L1PA4 6152 + 6039 6152 159594 113 chain 38588 chr7 159138663 + 84484024 84484631 THE1D-int 1627 - 5 1615 71308 217 1 0 51 3 4 15 14 1067 30 6 7 122 51 0 97 chain 18609 chr7 159138663 + 84496253 84496461 L1PA5 6144 - 0 208 131195 208 chain 19090 chr7 159138663 + 84500779 84501111 L1PA8 5853 + 5552 5853 129845 12 1 0 45 35 0 23 10 20 26 2 1 10 1 0 4 3 2 45 2 1 17 2 1 94 chain 90109 chr7 159138663 + 84509703 84511052 LTR12C 1709 + 0 1709 39609 192 16 2 15 0 2 42 42 49 36 0 43 83 0 4 182 0 119 68 4 0 116 7 35 16 35 114 97 20 13 35 0 2 143 5 111 86 5 1 12 8 7 84 chain 8652 chr7 159138663 + 84520794 84521042 Tigger4b 360 + 82 333 167466 33 24 35 5 1 0 47 80 72 23 1 0 6 0 2 28 chain 86897 chr7 159138663 + 84583555 84584536 L1PA5 6144 - 2386 3367 40706 588 1 0 263 0 1 129 chain 207220 chr7 159138663 + 84584536 84586925 L1PA5 6144 + 3750 6139 18701 602 0 2 304 1 0 636 1 0 845 chain 47565 chr7 159138663 + 84606230 84606876 L1PA8 5853 + 5213 5852 60795 351 5 4 42 2 0 71 1 0 6 16 15 38 2 1 9 11 10 92 chain 4404 chr7 159138663 + 84607494 84607557 L1MC1 2226 - 28 89 201886 14 1 0 32 1 0 15 chain 106236 chr7 159138663 + 84607642 84609012 L1PBa1 4058 - 514 1909 35200 109 0 3 130 1 0 128 0 4 63 1 0 509 0 4 129 0 6 18 0 3 163 1 5 44 0 3 74 chain 545030 chr7 159138663 + 84616758 84622907 L1PA4 6152 - 0 6152 2069 18 0 3 129 0 1 1242 0 1 410 0 4 117 0 7 279 0 1 66 22 1 18 2 8 157 1 3 522 3 0 2832 2 5 251 1 0 77 chain 5619 chr7 159138663 + 84638011 84638089 Tigger4 2445 + 2232 2308 188881 38 1 0 14 2 1 23 chain 18397 chr7 159138663 + 84667292 84667508 L1PA4 6152 + 5921 6136 131795 81 1 0 134 chain 24131 chr7 159138663 + 84672891 84673257 THE1B 368 + 0 368 109583 15 2 0 22 0 5 130 3 2 18 0 2 100 1 0 8 29 28 38 chain 20629 chr7 159138663 + 84751294 84751559 L1PA7 6471 + 6201 6470 125191 114 0 1 139 1 4 11 chain 21399 chr7 159138663 + 84764707 84764975 L1PA5 6144 + 5870 6137 122513 127 1 0 20 2 0 5 1 3 112 chain 90417 chr7 159138663 + 84787109 84788177 MER11C 1089 + 0 1069 39504 599 0 1 469 chain 15124 chr7 159138663 + 84794267 84794434 L1PA4 6152 - 105 272 140982 167 chain 9721 chr7 159138663 + 84794434 84794542 L1PA4 6152 + 6044 6152 161979 108 chain 18938 chr7 159138663 + 84807163 84807525 THE1C 375 + 0 360 130265 13 2 0 6 1 2 26 69 67 71 0 12 7 14 2 112 0 1 41 chain 6922 chr7 159138663 + 84809276 84809356 THE1C-int 1605 + 1488 1568 178019 80 chain 58897 chr7 159138663 + 84826233 84827017 MER4E1 777 + 0 770 53459 24 0 1 69 21 18 319 0 6 25 1 2 59 9 0 19 10 0 228 chain 39523 chr7 159138663 + 84831377 84831819 L1PA2 6032 - 4 446 69993 442 chain 52556 chr7 159138663 + 84870193 84871085 L1PB1 5432 + 4528 5380 57262 79 16 14 281 5 7 42 19 10 145 28 11 29 1 0 10 2 0 3 2 0 9 2 0 7 8 10 34 2 0 17 1 0 24 0 16 4 1 0 15 4 0 7 16 6 16 27 22 24 2 0 10 chain 548374 chr7 159138663 + 84879170 84885195 L1PA2 6032 + 0 6029 1654 436 3 1 1642 0 4 1589 0 1 804 0 1 1551 chain 551032 chr7 159138663 + 84959032 84965055 L1PA2 6032 - 0 6028 1302 162 0 1 4961 1 0 326 0 4 54 0 1 519 chain 19239 chr7 159138663 + 85006512 85006787 AluY 311 + 11 288 129414 19 0 3 90 24 20 9 0 3 133 chain 36422 chr7 159138663 + 85008677 85009111 L1PA6 6164 + 5728 6162 74339 434 chain 4795 chr7 159138663 + 85027052 85027110 MER4D 903 - 658 716 197413 58 chain 37524 chr7 159138663 + 85047889 85048295 L1PA2 6032 - 0 406 72783 406 chain 49822 chr7 159138663 + 85067720 85068377 L1PA8 5853 - 1111 1774 58801 79 2 1 4 0 1 113 0 7 91 2 0 230 1 2 135 chain 76856 chr7 159138663 + 85068377 85069462 L1PA8 5853 + 4764 5848 45054 5 0 3 237 7 0 74 25 26 42 0 7 288 4 5 30 0 3 78 1 0 48 2 0 69 1 0 8 2 1 52 2 1 19 2 1 12 11 9 66 chain 33920 chr7 159138663 + 85107911 85108397 MER41A 554 + 0 554 77740 235 1 0 26 3 63 101 0 1 41 32 39 10 0 1 37 chain 6600 chr7 159138663 + 85124511 85124584 L1PA2 6032 + 5959 6032 180453 73 chain 7223 chr7 159138663 + 85152080 85152157 L1PA2 6032 + 5949 6026 175926 77 chain 9293 chr7 159138663 + 85157331 85157431 L1PA2 6032 + 5932 6032 164093 100 chain 368784 chr7 159138663 + 85167627 85172005 L1P2 5180 - 192 4570 11126 225 0 1 69 2 1 51 1 0 1463 0 1 302 1 3 553 2 1 264 1 0 79 0 1 144 2 1 10 0 2 384 25 25 160 1 0 293 0 1 161 1 0 6 1 0 177 chain 35629 chr7 159138663 + 85249689 85250126 L1PA6 6164 + 5725 6162 75367 273 3 5 126 2 0 33 chain 14341 chr7 159138663 + 85251930 85252169 L1MA3 4352 - 0 224 143414 21 3 0 3 1 0 14 1 0 26 1 0 5 1 0 25 2 0 78 1 0 25 0 1 20 6 0 6 chain 120755 chr7 159138663 + 85277393 85278982 THE1A-int 1579 - 5 1579 30778 301 0 2 479 28 12 199 2 1 82 1 0 50 8 10 67 6 5 186 4 5 6 1 0 169 chain 86309 chr7 159138663 + 85286245 85287180 L1PA2 6032 - 0 941 41037 852 0 6 83 chain 37178 chr7 159138663 + 85291279 85291712 L1PA5 6144 - 2 444 73266 147 0 8 14 0 1 272 chain 10240 chr7 159138663 + 85301010 85301158 L1P1 4361 + 4199 4341 159414 105 6 1 23 2 1 12 chain 58591 chr7 159138663 + 85301587 85302318 LTR12 884 + 0 884 53643 25 1 0 162 0 157 34 2 0 398 2 1 107 chain 407264 chr7 159138663 + 85304266 85309282 L1PA6 6164 - 2 6164 9870 583 0 1 243 1 2 573 4 5 556 0 1 67 0 2 553 0 1137 105 5 0 118 0 4 64 12 5 541 0 1 211 0 1 131 0 1 409 0 1 31 0 1 261 0 1 41 13 12 83 1 0 14 25 32 371 chain 64775 chr7 159138663 + 85313050 85313828 LTR17 781 + 0 781 50673 232 0 1 94 0 1 37 2 3 413 chain 33589 chr7 159138663 + 85333120 85333648 MER41C 542 + 0 535 78257 49 0 1 131 0 1 51 0 3 79 6 0 14 85 93 113 chain 44088 chr7 159138663 + 85335733 85336226 L1PA5 6144 - 5 499 64110 144 0 1 349 chain 82353 chr7 159138663 + 85360245 85361299 MER11C 1089 + 0 1063 42607 249 0 1 25 0 1 37 0 4 215 64 63 93 0 4 7 1 0 38 0 1 127 0 1 54 1 0 143 chain 331723 chr7 159138663 + 85382384 85386589 L1PA7 6471 + 2274 6469 12139 367 7 0 59 1 2 128 0 2 119 62 7 18 1 3 148 1 8 210 0 1 92 4 0 11 1 5 48 1 0 334 3 1 255 1 2 628 0 1 49 0 42 135 1 0 81 0 1 253 0 1 336 1 0 88 0 1 83 1 0 300 0 1 354 9 6 15 chain 24502 chr7 159138663 + 85458839 85459108 L1PA3long 6157 - 0 269 107537 269 chain 5845 chr7 159138663 + 85463615 85463787 MLT2B2 565 + 391 555 186732 48 87 79 37 chain 25230 chr7 159138663 + 85472490 85472800 AluYf4 310 + 1 303 103592 230 7 1 34 2 0 37 chain 8923 chr7 159138663 + 85486631 85486769 THE1B-int 1605 + 1464 1605 166017 15 0 3 44 8 7 58 1 2 12 chain 28021 chr7 159138663 + 85500019 85500388 L1PA10 4194 + 3704 4069 92926 137 12 8 220 chain 13934 chr7 159138663 + 85509531 85509872 L1PB1 5432 + 5114 5414 144806 20 1 0 12 1 0 12 16 10 50 35 23 40 1 0 8 1 0 4 28 17 16 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 10 chain 9854 chr7 159138663 + 85515038 85515177 L1PA8 5853 + 5716 5853 161322 24 2 1 19 2 1 92 chain 19478 chr7 159138663 + 85533603 85533953 THE1D 372 + 10 372 128719 90 85 98 142 1 0 32 chain 10906 chr7 159138663 + 85549277 85549412 L1PREC2 3366 + 385 519 156568 83 1 0 51 chain 3011 chr7 159138663 + 85555309 85555341 L1PA2 6032 - 18 50 224792 32 chain 4169 chr7 159138663 + 85567141 85567193 L1MA8 2339 + 2166 2218 204980 52 chain 8672 chr7 159138663 + 85577273 85577380 L1MA3 4352 - 4060 4167 167345 107 chain 44828 chr7 159138663 + 85596042 85596579 L1PA7 6471 + 5873 6411 63259 263 0 1 274 chain 4003 chr7 159138663 + 85596580 85596626 L1PA7 6471 + 6413 6459 207346 46 chain 5253 chr7 159138663 + 85618349 85618412 FAM 185 + 87 151 192481 31 0 1 32 chain 90367 chr7 159138663 + 85619125 85620114 L1PA3long 6157 - 2230 3218 39455 238 1 0 750 chain 198005 chr7 159138663 + 85620114 85622306 L1PA3long 6157 + 3963 6156 19356 909 0 1 1283 chain 5816 chr7 159138663 + 85629637 85629716 L1MA5 2750 + 1277 1355 186983 20 1 0 58 chain 93381 chr7 159138663 + 85668779 85669791 L1PA2 6032 + 5020 6032 38541 1012 chain 28948 chr7 159138663 + 85689080 85689388 AluYg6 310 - 2 310 89234 308 chain 17875 chr7 159138663 + 85691965 85692325 THE1B 368 + 16 367 133178 24 8 13 78 80 71 105 18 13 47 chain 4610 chr7 159138663 + 85694107 85694169 THE1B 368 + 201 290 199512 53 0 27 9 chain 4126 chr7 159138663 + 85694221 85694266 THE1B 368 + 323 368 205569 45 chain 7765 chr7 159138663 + 85700380 85700482 L1MA8 2339 - 1612 1716 172506 15 0 2 87 chain 69917 chr7 159138663 + 85705119 85705897 L1PA4 6152 + 5373 6151 48423 778 chain 22799 chr7 159138663 + 85710603 85710900 AluSp 311 - 1 299 116578 96 10 11 191 chain 438169 chr7 159138663 + 85717505 85723164 HERVL-int 5654 + 0 5654 9101 421 2 0 169 0 3 273 0 5 65 5 4 27 0 1 4 4 5 99 2 1 169 5 6 47 0 1 255 0 1 10 4 6 108 16 15 93 2 1 5 0 1 1160 10 12 381 0 1 617 0 2 65 0 4 633 0 1 316 11 17 198 57 28 124 23 21 279 chain 8871 chr7 159138663 + 85747427 85747541 L1PA7 6471 - 1 114 166274 4 1 0 109 chain 68949 chr7 159138663 + 85770353 85771143 L1PA4 6152 + 5340 6143 48836 34 1 3 385 0 2 125 0 1 81 0 8 164 chain 21165 chr7 159138663 + 85771986 85772342 THE1B 368 - 0 368 123330 39 15 22 64 2 1 12 13 16 16 6 8 21 1 0 47 14 16 106 chain 47483 chr7 159138663 + 85782707 85783234 L1PA3long 6157 - 372 899 60850 527 chain 26288 chr7 159138663 + 85783238 85783529 L1PA3long 6157 + 5855 6146 98868 291 chain 215882 chr7 159138663 + 85790006 85792791 L1PA8A 6298 + 3486 6290 18117 5 0 3 118 4 5 254 0 1 259 0 1 113 0 1 220 0 1 227 0 1 110 0 1 12 2 0 218 0 5 6 9 4 380 0 9 46 1 0 13 2 3 68 0 2 718 chain 5683 chr7 159138663 + 85793546 85793614 LTR32 486 + 15 83 188263 68 chain 504847 chr7 159138663 + 85803361 85809422 L1PA5 6144 + 64 6138 6550 57 0 14 18 3 15 105 1 22 874 9 0 548 1 2 194 3 9 388 15 5 123 6 0 101 0 6 739 0 1 331 4 0 66 1 0 42 0 1 260 0 1 91 0 1 147 0 1 4 1 0 520 22 0 669 0 1 718 chain 180259 chr7 159138663 + 85825877 85827863 L1PA3long 6157 - 1 1989 20966 337 0 1 517 0 1 1132 chain 224787 chr7 159138663 + 85832803 85835653 L1PA3long 6157 + 3621 6153 17611 140 5 6 560 325 0 134 6 5 286 0 8 1144 1 0 249 chain 30211 chr7 159138663 + 85833515 85833833 AluYb9 318 - 0 318 84162 318 chain 335161 chr7 159138663 + 85858796 85862983 L1PA5 6144 + 2273 6143 12022 545 319 0 388 0 1 183 1 2 617 1 0 364 0 1 320 0 1 1186 5 6 243 3 1 12 chain 28069 chr7 159138663 + 85859364 85859660 AluYf4 310 - 14 310 92758 296 chain 231768 chr7 159138663 + 85883526 85886106 L1PA4 6152 + 3573 6152 17214 107 3 0 428 0 1 71 0 1 1971 chain 75911 chr7 159138663 + 85896135 85897089 L1PA7 6471 + 5496 6468 45532 81 0 2 22 0 8 91 0 2 196 0 5 233 0 1 184 6 5 123 0 1 18 chain 117978 chr7 159138663 + 85915346 85916895 L1PB1 5432 - 981 2522 31813 719 1 4 22 1 0 27 10 3 57 7 6 20 0 2 247 14 9 276 0 1 148 chain 23442 chr7 159138663 + 85921144 85921447 AluY 311 + 0 287 113417 99 16 0 24 1 0 9 0 1 154 chain 29794 chr7 159138663 + 85951431 85951741 AluYa5 310 - 0 310 85460 310 chain 4003 chr7 159138663 + 85954373 85954416 L1HS 6032 + 5989 6032 207343 43 chain 29016 chr7 159138663 + 85956538 85956848 AluYb8 318 - 8 318 88920 310 chain 546284 chr7 159138663 + 85969524 85975549 L1PA2 6032 + 3 6028 1910 253 1 0 5402 0 1 221 1 0 6 6 7 135 chain 9128 chr7 159138663 + 85982898 85983008 L1PA8 5853 + 5744 5853 164920 16 1 0 93 chain 41068 chr7 159138663 + 85997544 85998009 L1PA5 6144 + 4917 5386 67813 380 0 4 85 chain 63918 chr7 159138663 + 85998009 85998755 L1PA5 6144 + 5389 6135 51045 216 1 0 18 7 8 504 chain 25693 chr7 159138663 + 85999780 86000134 L1PA7 6471 + 6115 6465 101313 193 33 33 117 4 0 7 chain 367528 chr7 159138663 + 86004720 86008999 L1P1 4361 + 1 4328 11167 110 0 14 11 11 25 81 0 1 1212 1 0 38 0 1 867 1 2 60 0 3 142 1 4 125 0 5 365 0 4 8 1 5 424 1 2 637 1 0 158 1 0 23 chain 52715 chr7 159138663 + 86010315 86010931 L1PA4 6152 + 5523 6141 57180 455 1 2 23 1 2 136 chain 9534 chr7 159138663 + 86040916 86041029 L1PA4 6152 + 6039 6152 162913 113 chain 135085 chr7 159138663 + 86042359 86043853 L1PA3long 6157 + 4663 6157 26998 1494 chain 120414 chr7 159138663 + 86069701 86071126 LTR12C 1709 + 0 1707 30898 320 13 13 244 2 1 72 0 278 184 1 0 5 7 5 102 0 4 21 0 1 139 0 3 315 chain 27798 chr7 159138663 + 86073292 86073663 THE1B 368 + 0 368 93704 169 1 0 26 3 0 51 0 1 55 10 10 56 chain 253491 chr7 159138663 + 86086365 86089135 L1PA2 6032 - 17 2788 16057 1915 0 1 855 chain 160956 chr7 159138663 + 86113345 86115120 L1PA3long 6157 - 0 1780 23201 55 0 4 653 0 1 1067 chain 26325 chr7 159138663 + 86122547 86122852 AluYk4 311 + 1 305 98721 131 1 0 173 chain 169806 chr7 159138663 + 86153602 86155819 L1PA4 6152 + 4240 6152 22075 208 0 3 979 307 0 717 1 0 5 chain 27777 chr7 159138663 + 86154799 86155096 AluYa5 310 + 0 296 93772 132 1 0 164 chain 44534 chr7 159138663 + 86162473 86163002 L1PA5 6144 - 0 534 63542 11 3 1 383 0 7 132 chain 19988 chr7 159138663 + 86167288 86167640 L1PA14 3548 + 3118 3456 127179 13 2 0 6 1 0 84 1 0 111 14 9 32 46 41 42 chain 141832 chr7 159138663 + 86175780 86177723 L1P2 5180 - 3235 5178 25852 280 1 0 872 1 0 6 1 0 272 1 0 8 11 10 97 25 32 22 0 21 10 89 68 53 78 76 116 chain 173997 chr7 159138663 + 86177732 86179763 L1P2 5180 + 1960 4254 21593 1007 0 263 379 1 0 402 0 1 242 chain 35371 chr7 159138663 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2113 72187 301 1 4 158 chain 25349 chr7 159138663 + 86216928 86217260 L1PA7 6471 + 2124 2455 102963 225 6 5 101 chain 125684 chr7 159138663 + 86217261 86218784 L1PA7 6471 + 2455 3981 29193 166 5 0 11 5 0 7 0 3 316 0 1 213 0 1 185 0 1 77 0 3 57 1 0 80 0 3 98 0 1 260 0 1 42 chain 17815 chr7 159138663 + 86246936 86247284 THE1C 375 + 0 350 133352 87 4 5 15 115 116 127 chain 5815 chr7 159138663 + 86252740 86252814 MER54B 801 + 726 801 187000 63 0 1 11 chain 3283 chr7 159138663 + 86263446 86263481 MLT1I 406 + 227 262 219301 35 chain 8790 chr7 159138663 + 86327660 86327758 LTR15 485 + 358 456 166702 98 chain 2770 chr7 159138663 + 86340510 86340542 L1PA4 6152 - 8 40 229188 32 chain 30212 chr7 159138663 + 86351533 86351883 L1PA7 6471 + 5925 6275 84159 350 chain 14687 chr7 159138663 + 86351898 86352074 L1PA7 6471 + 6287 6467 142299 124 0 4 52 chain 4648 chr7 159138663 + 86368625 86368776 L1MA8 2339 - 182 315 199081 38 59 34 25 10 17 19 chain 27420 chr7 159138663 + 86409294 86409599 L1PA4 6152 - 254 560 94904 257 0 1 48 chain 54291 chr7 159138663 + 86425824 86428850 L1PA10 4194 - 44 782 56170 34 3 0 5 1 3 29 2 3 172 2293 0 227 0 5 260 chain 75143 chr7 159138663 + 86429289 86430255 L1PA10 4194 + 2265 3237 45950 254 0 2 90 20 18 69 0 3 48 0 1 345 0 1 97 0 1 43 chain 229300 chr7 159138663 + 86435078 86437710 L1PA5 6144 - 12 2648 17339 843 1 0 15 0 5 596 0 2 49 1 0 588 0 1 358 1 0 173 1 0 6 chain 5371 chr7 159138663 + 86443598 86443769 L1PB1 5432 - 41 194 191298 15 92 75 20 1 0 43 chain 20603 chr7 159138663 + 86462478 86462707 L1PA3long 6157 + 5913 6142 125287 229 chain 8282 chr7 159138663 + 86493361 86493530 L1PB1 5432 - 10 157 169502 18 1 0 13 1 0 21 1 0 24 5 3 12 8 4 18 9 0 13 3 0 16 1 0 5 chain 15183 chr7 159138663 + 86609140 86609313 MER107 203 + 0 173 140819 173 chain 512938 chr7 159138663 + 86611005 86617663 L1PA6 6164 + 0 6157 5887 280 0 1 4 2 1 179 1 0 749 0 1 535 0 1 572 11 6 67 1 4 28 1 6 77 12 11 214 0 1 452 0 1 37 0 1 229 8 1 243 0 2 245 2 3 27 221 0 273 289 0 120 0 4 274 1 0 43 0 2 1389 7 9 65 chain 17427 chr7 159138663 + 86614998 86615195 L1PA4 6152 - 14 211 134441 197 chain 27231 chr7 159138663 + 86615478 86615764 AluYa5 310 + 15 301 95494 286 chain 14255 chr7 159138663 + 86635680 86635851 L1PA7 6471 + 6300 6469 143695 159 2 0 10 chain 6152 chr7 159138663 + 86640043 86640146 MER2 342 - 205 313 183964 28 4 5 20 1 5 50 chain 236234 chr7 159138663 + 86651395 86654041 L1PA4 6152 - 0 2664 16963 10 1 0 248 1 0 201 0 2 383 0 4 131 0 11 1062 0 2 603 0 1 6 chain 16676 chr7 159138663 + 86654041 86654224 L1PA4 6152 + 3310 3493 136474 183 chain 19416 chr7 159138663 + 86660148 86660485 THE1B 368 - 24 368 128902 32 7 6 62 61 67 60 7 9 108 chain 20186 chr7 159138663 + 86667842 86669072 L1MA2 4263 + 1008 2267 23995 40 3 4 350 0 7 14 0 3 16 0 6 6 0 3 75 0 4 212 8 12 123 5 6 73 0 1 271 7 6 27 chain 548601 chr7 159138663 + 86669072 86675084 L1PA2 6032 + 0 6029 1627 257 1 0 440 0 7 203 0 1 856 0 2 430 1 2 504 1 2 1273 0 2 250 0 4 1796 chain 17773 chr7 159138663 + 86676196 86677279 L1MA2 4263 + 2957 4047 23995 122 1 0 149 0 1 48 0 1 225 0 9 54 1 0 18 6 2 76 1 0 42 0 5 27 0 3 52 18 15 148 23 21 72 chain 362588 chr7 159138663 + 86691723 86695695 L1PA3long 6157 - 0 3968 11300 5 3 0 1258 1 0 2705 chain 64781 chr7 159138663 + 86725313 86726033 L1PA4 6152 - 1199 1920 50666 552 0 1 168 chain 105439 chr7 159138663 + 86726033 86727213 L1PA4 6152 + 4949 6143 35386 213 0 11 402 0 1 427 0 1 126 0 1 12 chain 26076 chr7 159138663 + 86743192 86743557 THE1B 368 + 0 368 99720 172 7 6 22 8 4 102 7 15 47 chain 46880 chr7 159138663 + 86761336 86762074 L1MA2 4263 + 3387 4114 61325 58 2 0 15 3 4 120 6 2 77 11 22 9 1 0 4 5 1 97 13 10 56 0 1 93 11 9 82 18 11 45 2 1 10 chain 8851 chr7 159138663 + 86778283 86778429 L1MB1 2102 + 1898 2038 166369 44 2 0 65 21 17 14 chain 6088 chr7 159138663 + 86789092 86789181 Tigger3a 397 - 162 258 184517 26 9 16 54 chain 13067 chr7 159138663 + 86815947 86816165 Tigger3a 397 + 158 377 147967 97 15 11 50 23 28 33 chain 3593 chr7 159138663 + 86819028 86819066 MER58C 217 - 29 67 213790 38 chain 113214 chr7 159138663 + 86833630 86835240 THE1B-int 1605 - 6 1604 33310 131 4 14 170 0 20 141 15 16 40 0 3 29 0 1 92 0 1 115 7 18 96 3 0 5 0 2 134 0 1 43 6 8 25 49 0 43 0 25 253 0 1 31 1 4 22 45 0 32 0 2 64 0 2 14 chain 11408 chr7 159138663 + 86837254 86837411 THE1B 368 - 208 366 154666 43 9 10 105 chain 27875 chr7 159138663 + 86837419 86837794 THE1B-int 1605 - 6 411 93439 65 1 2 64 4 14 87 11 10 74 0 20 69 chain 11530 chr7 159138663 + 86838454 86838595 THE1D 372 - 8 149 154184 141 chain 27906 chr7 159138663 + 86839603 86839946 MSTA-int 1630 - 0 342 93345 49 1 2 26 2 1 132 1 0 132 chain 25145 chr7 159138663 + 86866558 86866872 AluY 311 + 0 309 104029 126 6 0 40 1 2 141 chain 490803 chr7 159138663 + 86867980 86873473 L1PA3long 6157 + 4 6156 7326 90 0 526 154 6 130 1546 3 1 82 4 8 11 0 3 1389 0 1 15 1 0 390 0 4 1802 chain 28716 chr7 159138663 + 86873493 86873803 AluYa5 310 + 0 309 90273 132 1 0 177 chain 116672 chr7 159138663 + 86874279 86875799 THE1A-int 1579 + 2 1546 32235 88 0 1 146 8 9 31 14 31 247 0 1 92 2 1 6 0 1 329 9 11 259 4 0 92 0 5 125 0 1 68 chain 26567 chr7 159138663 + 86875831 86876480 THE1A 353 + 0 353 97777 15 2 0 24 0 1 69 4 3 177 294 0 64 chain 47528 chr7 159138663 + 86885593 86887148 L1PA7 6471 + 2388 3942 12913 88 4 5 22 1 0 16 0 4 107 15 17 305 0 1 84 0 1 240 1 0 206 3 2 17 1 0 67 0 4 26 28 21 271 3 0 50 chain 494205 chr7 159138663 + 86887189 86893296 L1PA6 6164 - 3 6164 7160 143 1 11 653 16 20 97 2 1 187 0 29 1081 0 7 517 1 2 137 0 1 4 1 0 909 5 6 31 2 0 264 2 3 137 0 1 200 2 1 249 16 16 247 0 1 55 39 40 238 3 4 302 1 0 231 3 4 189 3 4 139 chain 76839 chr7 159138663 + 86893303 86895817 L1PA7 6471 + 3942 6465 12913 235 0 3 362 0 1 641 7 11 107 0 1 28 17 16 961 0 1 156 chain 27128 chr7 159138663 + 86904445 86904784 THE1D-int 1627 - 1260 1602 95837 250 1 4 88 chain 452484 chr7 159138663 + 86908022 86913688 HERVL-int 5654 + 0 5654 8672 325 0 2 277 0 1 41 6 5 186 0 1 16 12 17 26 4 0 152 0 6 669 0 2 735 3 0 43 7 8 206 5 4 97 0 1 61 0 1 534 0 1 47 1 0 5 0 2 621 0 1 122 6 0 278 7 6 36 68 19 55 6 3 7 0 4 59 0 1 26 0 22 68 0 1 630 10 11 151 0 4 58 chain 25340 chr7 159138663 + 86913688 86914059 MLT2A1 477 + 0 383 103024 169 4 1 11 0 1 22 0 1 93 0 29 9 27 11 36 chain 9017 chr7 159138663 + 86914832 86916582 L1P3 4156 - 567 2299 21390 95 1 0 25 1 5 68 0 1 539 0 1 150 0 1 66 19 0 220 0 1 36 2 1 116 7 1 75 0 1 61 0 1 99 5 4 165 chain 107905 chr7 159138663 + 86917858 86919178 LTR12C 1709 + 0 1702 34753 649 0 280 143 0 2 34 1 0 8 5 3 105 0 4 183 1 0 28 0 101 85 1 0 77 chain 7544 chr7 159138663 + 86919822 86919911 THE1A-int 1579 + 1255 1344 173911 89 chain 2015 chr7 159138663 + 86919911 86919936 THE1A-int 1579 + 1345 1371 238485 7 0 1 18 chain 15032 chr7 159138663 + 86919951 86920136 THE1A-int 1579 + 1387 1572 141230 185 chain 27543 chr7 159138663 + 86920145 86920497 THE1A 353 + 2 353 94523 104 5 4 243 chain 11142 chr7 159138663 + 86927191 86927549 THE1B 368 - 0 368 155663 68 184 194 53 7 9 29 2 0 15 chain 41590 chr7 159138663 + 86929488 86930317 L1PA15 4387 + 3574 4366 67166 189 66 61 6 2 0 61 3 1 41 1 0 34 1 0 54 32 33 46 10 9 21 1 0 54 6 5 19 22 17 18 5 7 17 7 4 43 3 1 14 15 0 27 1 0 10 chain 4190 chr7 159138663 + 86931396 86931446 MER5B 177 + 20 70 204694 50 chain 519185 chr7 159138663 + 86933383 86939870 L1PA7 6471 + 5 6469 5243 131 31 35 240 0 1 654 1 2 30 0 1 46 6 8 244 0 3 760 0 4 439 9 0 29 33 0 843 13 11 34 43 24 62 0 1 229 0 1 135 1 2 34 0 1 57 7 13 181 0 1 932 0 4 421 1 3 79 1 4 42 1 2 148 9 12 23 1 2 11 0 1 377 0 1 131 3 0 15 chain 6157 chr7 159138663 + 86947705 86948900 L1P3 4156 - 2568 3768 21390 83 20 16 62 0 2 278 0 2 31 3 1 126 0 1 74 1 6 504 0 1 13 chain 217536 chr7 159138663 + 86948900 86951523 L1PA7 6471 + 3839 6466 18029 256 3 4 216 1 2 591 2 0 18 0 1 51 17 17 359 1 0 269 0 6 830 2 0 7 chain 43741 chr7 159138663 + 86960068 86960617 MER61E 571 - 0 562 64516 39 0 1 407 1 0 26 0 13 76 chain 24185 chr7 159138663 + 86987526 86987825 AluY 311 + 15 310 109295 118 14 10 167 chain 5337 chr7 159138663 + 87017511 87017579 L1PA7 6471 + 4880 4948 191665 68 chain 132400 chr7 159138663 + 87017581 87019096 L1PA7 6471 + 4949 6467 27542 672 0 3 657 0 1 167 1 0 18 chain 22003 chr7 159138663 + 87024348 87024784 MLT2A2 560 - 0 560 120217 44 24 36 19 0 5 43 43 152 34 34 34 15 11 9 169 chain 5170 chr7 159138663 + 87087232 87087312 L1MA3 4352 - 92 168 193343 21 7 3 52 chain 12756 chr7 159138663 + 87089760 87089930 L1PA16 3655 - 62 228 149231 14 3 0 36 1 0 116 chain 529151 chr7 159138663 + 87094212 87100679 L1PA5 6144 + 0 6132 4283 487 25 0 481 0 1 1477 3 1 55 0 6 72 0 1 890 0 12 256 339 0 297 0 1 40 0 1 263 0 4 786 2 0 166 10 14 549 0 3 269 chain 22992 chr7 159138663 + 87097970 87098252 AluYk4 311 + 4 287 115663 127 1 2 154 chain 102962 chr7 159138663 + 87114307 87115643 L1PA8 5853 + 4493 5853 36001 96 1 0 123 0 6 16 0 1 133 0 1 48 0 27 66 2 0 554 1 0 44 2 0 70 11 10 8 1 0 44 3 2 15 8 6 90 chain 9175 chr7 159138663 + 87137140 87137248 L1PA16 3655 + 3430 3538 164684 108 chain 4457 chr7 159138663 + 87146453 87146583 MLT1H 522 + 0 150 201271 19 0 1 5 63 82 43 chain 24213 chr7 159138663 + 87153769 87154062 L1PA4 6152 + 5860 6152 109133 136 7 6 150 chain 5599 chr7 159138663 + 87164888 87164953 L1P3 4156 + 3874 3939 189085 65 chain 28480 chr7 159138663 + 87208004 87208308 AluYa5 310 - 6 310 91264 304 chain 16838 chr7 159138663 + 87208906 87209176 L1MA3 4352 - 4039 4312 136019 114 33 37 6 1 0 77 1 0 4 0 1 34 chain 3189 chr7 159138663 + 87271989 87272024 L1PA5 6144 + 5842 5877 221122 35 chain 30512 chr7 159138663 + 87309262 87309627 L1PA7 6471 - 69 434 83401 365 chain 23609 chr7 159138663 + 87313811 87314091 AluSc 308 + 29 308 112524 102 1 0 177 chain 80051 chr7 159138663 + 87343473 87344376 MER11D 897 - 0 897 43568 613 6 0 284 chain 193250 chr7 159138663 + 87354410 87356587 L1PA5 6144 - 2 2184 19751 1681 5 10 491 chain 9555 chr7 159138663 + 87356587 87356703 L1PA5 6144 + 3801 3918 162412 94 0 1 22 chain 77465 chr7 159138663 + 87361846 87362736 MER11D 897 - 0 897 44752 45 1 2 5 0 3 300 1 5 256 1 0 281 chain 333326 chr7 159138663 + 87371547 87376731 L1PB1 5432 - 12 5402 12075 16 1 0 13 1 0 21 1 0 24 2 0 14 29 19 17 3 0 15 3 2 42 1 0 16 2 1 53 2 0 9 19 14 10 1 0 20 626 10 20 0 3 277 1 0 48 2 3 39 0 2 17 0 1 68 2 0 5 6 4 92 0 3 209 0 1 355 0 1 80 1 0 140 5 1 259 0 4 95 11 11 106 2 0 366 0 3 23 0 3 20 7 5 186 0 1 27 0 2 11 10 16 104 0 1 246 0 1 374 17 6 324 0 4 119 49 897 381 6 5 89 8 0 16 chain 341026 chr7 159138663 + 87379196 87382957 L1PA3long 6157 - 0 3769 11870 1808 0 3 117 0 3 1273 0 2 563 chain 16311 chr7 159138663 + 87398965 87399173 L1PA8 5853 - 0 205 137459 93 1 0 19 2 1 60 1 0 32 chain 6702 chr7 159138663 + 87418036 87418118 L1PA2 6032 - 1 80 179668 28 3 0 51 chain 82492 chr7 159138663 + 87423775 87425473 L1MA2 4263 + 2735 4102 42541 149 19 18 76 6 9 17 0 2 42 33 36 39 27 28 15 1 0 6 19 29 85 2 0 88 4 1 106 7 6 56 6 8 23 17 12 76 1 0 144 3 0 66 333 6 80 21 20 80 7 0 44 chain 339166 chr7 159138663 + 87448605 87452363 L1PA4 6152 + 2390 6151 11918 1609 1 0 1305 0 4 843 chain 15832 chr7 159138663 + 87452775 87453113 L1PB1 5432 - 28 333 138847 13 1 0 21 1 0 24 2 0 14 1 0 5 2 1 29 13 0 11 13 12 38 18 16 53 2 0 8 2 0 3 2 0 9 1 0 13 6 5 15 3 0 15 chain 40082 chr7 159138663 + 87453845 87454336 THE1B-int 1605 + 0 518 69208 73 1 0 323 3 5 23 0 26 68 chain 29255 chr7 159138663 + 87457752 87458145 L1PA16 3655 - 118 507 87767 114 7 6 127 2 0 86 1 0 56 chain 77344 chr7 159138663 + 87486831 87487875 MER11A 1151 + 0 1132 44807 48 7 106 140 4 0 94 0 1 284 11 14 150 42 25 55 0 1 6 1 0 47 0 1 28 1 0 70 0 6 56 chain 5427 chr7 159138663 + 87494647 87494791 L1M3f 2199 - 342 481 190731 5 3 0 27 58 56 51 chain 48229 chr7 159138663 + 87495823 87496390 LTR14C 587 + 0 587 60293 178 0 1 140 0 17 10 0 2 239 chain 29537 chr7 159138663 + 87522548 87522859 AluYb8 318 - 7 318 86491 311 chain 5850 chr7 159138663 + 87527672 87527776 L1MB3 1562 + 6 108 186682 14 2 1 63 11 10 14 chain 6766 chr7 159138663 + 87553890 87553987 L1PBa 3878 + 3147 3242 179197 30 4 5 38 3 0 22 chain 299949 chr7 159138663 + 87557934 87562181 L1PB1 5432 + 1171 5422 13427 35 1 0 98 4 5 10 0 1 67 33 36 119 11 15 239 5 6 168 0 1 179 0 1 344 5 0 116 8 3 6 0 5 34 9 10 48 4 0 102 2 1 114 0 6 315 0 1 8 6 17 199 0 2 51 1 2 166 3 2 6 0 1 18 2 5 90 12 9 158 0 5 159 10 14 162 0 1 44 3 4 71 1 2 158 0 1 15 9 0 13 1 0 165 0 9 290 3 2 8 2 1 20 1 0 8 3 2 13 23 17 44 5 4 15 1 0 45 1 0 4 0 1 9 2 0 6 15 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 551752 chr7 159138663 + 87579455 87585589 L1PA3long 6157 - 0 6153 1217 1263 1 0 1628 0 4 73 1 0 18 3 1 1740 0 8 362 0 1 344 0 7 10 5 4 126 0 4 560 chain 26370 chr7 159138663 + 87596182 87596552 THE1C 375 + 0 375 98532 184 29 31 65 6 7 5 0 2 81 chain 183863 chr7 159138663 + 87601341 87603412 L1PA4 6152 + 4082 6151 20604 660 1 0 56 9 1 283 0 2 222 0 4 698 1 2 141 chain 29088 chr7 159138663 + 87620667 87620979 AluYb8 318 - 5 317 88603 312 chain 37795 chr7 159138663 + 87627120 87627647 MLT2A2 560 - 0 549 72424 14 0 12 122 2 13 181 54 53 154 chain 3817 chr7 159138663 + 87635372 87635414 L1P1 4361 - 1258 1300 210126 42 chain 246854 chr7 159138663 + 87635479 87638206 L1PA3long 6157 + 3407 6142 16406 950 7 11 1646 1 5 123 chain 4163 chr7 159138663 + 87652405 87652454 L1M1 2793 - 458 507 205052 49 chain 6333 chr7 159138663 + 87652633 87652735 L1MA3 4352 - 50 148 182518 14 1 0 6 1 0 24 8 6 48 chain 59576 chr7 159138663 + 87653878 87654539 L1PA4 6152 - 11 672 53063 661 chain 38690 chr7 159138663 + 87657400 87657974 L1MA3 4352 - 3212 3778 71162 21 26 24 14 2 1 195 19 17 16 1 0 80 2 0 173 1 0 6 0 1 18 chain 26811 chr7 159138663 + 87667763 87668049 AluYg6 310 - 6 292 96940 286 chain 12026 chr7 159138663 + 87675052 87675203 L1MA8 2339 - 253 405 152089 75 0 2 51 1 0 24 chain 39386 chr7 159138663 + 87679898 87680336 L1PA5 6144 - 722 1161 70189 11 0 1 427 chain 60047 chr7 159138663 + 87680336 87681028 L1PA5 6144 + 5453 6141 52796 74 0 1 607 5 0 6 chain 5610 chr7 159138663 + 87688792 87688865 Tigger1 2417 - 44 117 188983 73 chain 14824 chr7 159138663 + 87696558 87696739 L1PA2 6032 - 0 180 141865 13 2 0 162 0 1 4 chain 541774 chr7 159138663 + 87706679 87712807 L1PA4 6152 + 6 6152 2550 20 0 1 719 8 0 204 0 4 634 0 1 1158 0 1 461 2 1 257 1 8 205 0 1 670 0 4 309 7 8 1467 0 7 6 chain 17992 chr7 159138663 + 87749499 87749699 L1PA5 6144 - 5 205 132879 200 chain 22924 chr7 159138663 + 87764328 87764618 AluSx1 309 + 22 308 115994 29 4 0 257 chain 8798 chr7 159138663 + 87769068 87769185 LTR45B 484 - 156 289 166655 74 6 22 37 chain 190764 chr7 159138663 + 87787226 87790954 L1PREC2 3366 + 233 3249 19973 15 1 0 5 2 1 6 1 0 9 1 0 22 1 2 67 1 0 5 7 8 32 5 4 59 1 0 374 14 10 110 1 0 348 3 6 43 9 10 74 3 4 46 13 11 94 1 0 480 0 3 163 0 1 5 2 1 395 0 1 69 4 6 10 11 51 16 9 8 43 1 0 4 3 0 11 54 41 14 5 3 25 617 4 11 22 8 35 6 4 26 244 157 22 10 5 21 9 0 8 chain 43881 chr7 159138663 + 87789923 87790431 L1PA5 6144 + 5627 6138 64355 263 0 1 177 4 6 64 chain 20444 chr7 159138663 + 87833579 87833954 THE1D 372 + 0 372 125774 76 13 0 8 5 1 50 0 4 27 29 32 38 16 18 45 0 4 29 13 14 26 chain 82784 chr7 159138663 + 87851004 87851903 L1PA2 6032 - 2 902 42424 528 0 1 371 chain 47164 chr7 159138663 + 87851904 87852425 L1PA2 6032 + 4607 5128 61076 521 chain 22447 chr7 159138663 + 87856659 87856942 AluSg7 307 - 10 296 118265 21 0 2 146 4 5 112 chain 39398 chr7 159138663 + 87894147 87894662 MER41A 554 - 1 544 70168 72 0 24 59 2 1 226 3 7 94 3 4 56 chain 159849 chr7 159138663 + 87894807 87896740 SVA_D 2077 - 11 2077 23361 728 97 0 120 1 0 147 0 51 36 0 83 33 0 117 188 40 0 508 0 1 6 0 10 10 1 0 4 0 11 9 1 0 4 chain 3471 chr7 159138663 + 87895535 87895583 SVA_D 2077 - 1044 1092 146795 48 chain 3459 chr7 159138663 + 87895583 87895632 SVA_D 2077 - 815 866 122536 4 0 1 43 0 1 2 chain 5203 chr7 159138663 + 87900428 87900499 L1MA5A 2387 - 81 151 192997 11 1 0 59 chain 3385 chr7 159138663 + 87926783 87926975 MER53 195 + 1 195 217368 31 139 141 22 chain 29263 chr7 159138663 + 87933334 87933660 L1PA3long 6157 + 5831 6157 87727 326 chain 12922 chr7 159138663 + 87947980 87948141 PRIMA4_LTR 623 - 1 164 148550 67 0 2 94 chain 27054 chr7 159138663 + 87949604 87949984 LTR7B 505 + 0 491 96097 105 0 10 56 1 0 4 13 77 59 0 41 85 18 17 26 2 0 11 chain 23948 chr7 159138663 + 87976708 87977078 MER83 447 - 50 438 110634 62 14 22 35 5 8 5 0 1 23 1 8 79 6 5 98 0 1 6 1 0 35 chain 50996 chr7 159138663 + 87992777 87993410 PABL_A 660 - 0 660 58315 127 1 2 21 0 2 415 0 9 49 0 15 20 chain 4446 chr7 159138663 + 87998546 87998600 MLT2B1 522 - 312 366 201394 54 chain 231160 chr7 159138663 + 88000102 88003353 L1PA6 6164 - 2 6164 17247 8 2 0 53 23 10 77 15 22 409 7 10 180 0 2 242 2 0 374 0 1 263 0 4 141 0 4 117 317 3213 117 0 3 95 0 17 231 1 0 120 8 0 449 chain 116629 chr7 159138663 + 88008170 88009919 L1PB1 5432 - 36 1761 32254 4 1 0 22 1 0 24 2 0 14 9 6 18 18 7 20 1 0 41 8 7 12 3 1 52 2 0 5 11 7 10 1 0 12 1 0 21 1 0 10 3 0 17 8 5 65 0 2 201 0 8 41 9 5 52 0 2 70 7 6 20 0 4 94 4 3 509 15 15 32 22 22 198 4 7 54 chain 379246 chr7 159138663 + 88009929 88014809 HERVL-int 5654 + 1047 5654 10782 272 1 0 4 0 1 638 6 8 115 1 21 230 0 1 777 0 12 840 0 2 279 0 2 176 0 1 82 318 8 241 0 1 149 0 1 310 8 0 162 0 2 52 0 1 219 chain 15356 chr7 159138663 + 88056427 88056604 L1PA5 6144 + 5859 6036 140324 177 chain 10471 chr7 159138663 + 88059947 88060081 L1PB4 2604 - 62 196 158379 134 chain 44374 chr7 159138663 + 88063543 88064104 L1PA7 6471 + 5908 6467 63724 83 4 0 316 2 4 103 1 0 4 0 1 48 chain 67587 chr7 159138663 + 88068387 88069389 L1PA6 6164 - 10 824 49406 285 0 2 271 0 6 102 202 1 48 0 5 94 chain 18492 chr7 159138663 + 88069051 88069247 AluYa5 310 - 0 196 131528 196 chain 6540 chr7 159138663 + 88078671 88078765 LTR9B 643 - 420 517 180917 12 0 5 5 3 0 13 0 1 61 chain 35715 chr7 159138663 + 88091373 88091752 L1HS 6032 - 0 379 75250 379 chain 14278 chr7 159138663 + 88098021 88098308 THE1C 375 + 0 307 143625 15 2 0 31 1 7 17 15 16 21 8 10 62 0 3 18 40 50 57 chain 17261 chr7 159138663 + 88120045 88120257 AluSc 308 + 93 304 134890 25 1 0 186 chain 12546 chr7 159138663 + 88139662 88139955 L1PB1 5432 - 12 278 150057 16 1 0 13 5 4 17 1 0 17 0 1 6 2 0 14 8 5 19 45 31 40 1 0 16 2 1 50 3 1 10 2 0 5 chain 6061 chr7 159138663 + 88150428 88150600 L1PB1 5432 + 5270 5422 184734 10 1 0 16 1 0 4 2 0 13 24 14 5 1 0 14 2 0 24 10 9 13 2 1 11 1 0 18 chain 4653 chr7 159138663 + 88153419 88153477 MER58B 340 + 276 334 199039 58 chain 120627 chr7 159138663 + 88154907 88156462 THE1A-int 1579 - 5 1579 30831 61 0 1 14 0 5 170 13 6 193 10 13 115 1 0 5 5 6 299 1 15 168 0 1 60 3 5 437 chain 27145 chr7 159138663 + 88160516 88160872 THE1B 368 + 0 356 95778 15 2 0 25 0 5 123 1 0 24 2 0 164 chain 540920 chr7 159138663 + 88180354 88186375 L1PA3long 6157 - 1 6153 2677 2580 0 1 2671 0 128 189 0 1 417 27 28 137 chain 122498 chr7 159138663 + 88187436 88188996 THE1A-int 1579 + 0 1568 30223 148 5 8 284 0 2 52 1 0 699 18 22 278 0 1 23 2 1 50 chain 9138 chr7 159138663 + 88207502 88207671 MER30 238 - 0 169 164868 70 30 45 16 15 0 38 chain 149482 chr7 159138663 + 88213777 88215459 L1PA4 6152 - 0 1692 24688 6 0 5 102 0 1 140 1 0 592 1 6 840 chain 16154 chr7 159138663 + 88250307 88250488 L1PA5 6144 + 5953 6134 137884 181 chain 20231 chr7 159138663 + 88253678 88253945 L1PA7 6471 - 5 288 126437 5 3 0 132 13 32 114 chain 37191 chr7 159138663 + 88259651 88260077 L1PA5 6144 - 2808 3234 73116 57 1 0 101 0 1 267 chain 244613 chr7 159138663 + 88260077 88262877 L1PA5 6144 + 3347 6143 16524 160 1 3 1117 0 1 107 3 4 212 0 1 1079 1 0 104 8 0 8 chain 21985 chr7 159138663 + 88273212 88273503 THE1A 353 + 0 292 120294 22 5 7 81 1 0 182 chain 32992 chr7 159138663 + 88308971 88309576 L1PB1 5432 + 4839 5422 79231 38 10 16 33 1 9 67 4 3 98 1 0 11 3 0 24 1 0 4 3 2 14 5 1 9 2 0 51 1 0 18 13 12 32 1 0 15 1 0 2 11 0 28 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3134 chr7 159138663 + 88315078 88315113 MLT2A2 560 - 291 326 222298 35 chain 22914 chr7 159138663 + 88338690 88339033 THE1B 368 + 0 368 116036 13 2 0 27 0 5 57 4 8 13 11 32 19 2 1 82 0 1 33 3 0 77 chain 5848 chr7 159138663 + 88350243 88350316 L1PA16 3655 - 76 149 186704 73 chain 12640 chr7 159138663 + 88365814 88365950 AluYa8 305 + 169 305 149684 136 chain 4251 chr7 159138663 + 88430383 88430444 L1PB1 5432 - 5 62 203855 5 2 0 18 1 0 13 1 0 21 chain 95702 chr7 159138663 + 88445569 88446701 L1PA5 6144 + 5006 6140 37898 664 0 1 247 7 8 44 0 12 6 12 0 152 chain 218131 chr7 159138663 + 88483931 88486369 L1PA4 6152 - 12 2450 17998 462 0 1 1086 1 0 889 chain 62389 chr7 159138663 + 88486369 88487099 L1PA4 6152 + 2931 3664 51573 240 1 0 453 1 5 35 chain 29139 chr7 159138663 + 88499418 88499721 AluYg6 310 + 0 303 88368 303 chain 203029 chr7 159138663 + 88501786 88504046 L1PA3long 6157 - 1 2262 18991 849 1 2 1410 chain 119949 chr7 159138663 + 88504046 88505370 L1PA3long 6157 + 2566 3890 31076 1324 chain 17229 chr7 159138663 + 88521057 88521265 L1PA5 6144 - 2 226 134981 123 0 8 13 1 9 71 chain 52709 chr7 159138663 + 88567212 88567955 MER4E1 777 - 18 777 57184 51 10 12 74 0 1 71 26 14 188 0 19 67 1 0 135 5 9 100 2 5 13 chain 6081 chr7 159138663 + 88574041 88574208 Tigger4b 360 + 1 190 184567 18 17 11 44 4 8 14 18 41 5 0 1 14 7 8 5 1 0 20 chain 156790 chr7 159138663 + 88574246 88576151 L1PA7 6471 - 839 2737 23760 8 0 3 196 0 1 296 2 1 322 0 2 73 1 0 354 0 2 4 0 1 95 6 0 272 15 6 232 0 1 29 chain 68664 chr7 159138663 + 88576151 88576995 L1PA7 6471 + 5633 6470 48927 70 1 0 623 5 0 131 1 0 13 chain 26791 chr7 159138663 + 88599993 88600292 L1PA4 6152 + 5853 6151 97009 45 1 0 253 chain 3407 chr7 159138663 + 88621942 88621983 MLT1E1 597 - 379 420 216970 41 chain 192991 chr7 159138663 + 88644651 88646791 L1PA3long 6157 - 0 2143 19774 23 1 0 1439 0 1 125 0 1 543 0 2 9 chain 14396 chr7 159138663 + 88660311 88660491 L1PA6 6164 + 5982 6162 143220 180 chain 56508 chr7 159138663 + 88663585 88664254 L1PA7 6471 - 7 689 54847 99 3 16 567 chain 6567 chr7 159138663 + 88677296 88677505 L1PB1 5432 - 15 211 180720 13 6 5 8 1 0 23 40 43 16 29 17 12 1 0 37 7 6 16 chain 21626 chr7 159138663 + 88705529 88705868 THE1B 368 + 2 368 121670 45 20 52 6 12 0 67 1 0 134 5 13 49 chain 11509 chr7 159138663 + 88716181 88716306 L1PA4 6152 + 6027 6152 154256 125 chain 23123 chr7 159138663 + 88725198 88725490 AluY 311 + 15 305 115025 110 4 1 151 4 5 23 chain 34113 chr7 159138663 + 88776898 88777385 MER1A 529 + 32 527 77464 48 15 20 296 1 0 48 23 27 56 chain 34691 chr7 159138663 + 88791972 88792379 L1PA3long 6157 - 2 390 76637 224 19 0 164 chain 150654 chr7 159138663 + 88822625 88824300 L1PA3long 6157 - 0 1673 24520 6 3 0 963 0 1 703 chain 127286 chr7 159138663 + 88824300 88826352 L1PA11 4918 + 2816 4567 28712 152 1 2 528 215 0 11 0 1 186 1 0 106 92 18 107 0 1 140 0 1 20 6 8 185 1 2 33 8 10 62 8 7 11 2 0 68 2 0 13 1 0 20 4 0 9 31 22 15 1 0 13 chain 11383 chr7 159138663 + 88824981 88825121 L1PA11 4918 + 3284 3425 154773 36 0 1 104 chain 34472 chr7 159138663 + 88836097 88836524 THE1B-int 1605 - 1176 1605 76954 214 0 2 213 chain 24181 chr7 159138663 + 88841103 88841416 L1PA10 4194 - 44 354 109317 25 11 8 277 chain 22674 chr7 159138663 + 88847901 88848298 Tigger2a 444 - 48 420 117197 27 42 18 24 14 12 11 22 20 73 0 3 184 chain 98515 chr7 159138663 + 88857318 88858605 LTR12C 1709 - 0 1709 37154 50 0 131 52 1 0 4 38 9 22 0 1 212 0 4 106 4 2 4 1 0 104 0 278 124 0 1 136 8 5 83 0 43 338 chain 12216 chr7 159138663 + 88890931 88891082 Tigger3a 397 - 94 245 151359 151 chain 251089 chr7 159138663 + 88898387 88901250 L1PA5 6144 - 8 2882 16169 1128 1 0 1331 2 0 393 0 14 8 chain 36337 chr7 159138663 + 88903473 88903864 L1PA2 6032 - 0 391 74454 391 chain 225573 chr7 159138663 + 88906644 88909181 L1PA3long 6157 - 0 2516 17554 151 21 0 2365 chain 93424 chr7 159138663 + 88909181 88910219 L1PA3long 6157 + 2602 3644 38505 662 0 4 376 chain 24545 chr7 159138663 + 88911270 88911533 AluYa5 310 + 37 300 107288 263 chain 14502 chr7 159138663 + 88927572 88927742 L1PA7 6471 - 18 189 142884 137 0 1 33 chain 40642 chr7 159138663 + 88948072 88948564 MER9a1 513 - 0 513 68382 246 4 26 39 1 0 202 chain 12624 chr7 159138663 + 88949362 88949515 L1PA7 6471 + 6310 6462 149754 148 1 0 4 chain 28526 chr7 159138663 + 88972266 88972564 AluYd8 298 - 0 298 91073 298 chain 139029 chr7 159138663 + 88989066 88990673 L1PA4 6152 - 11 1613 26292 130 7 0 471 5 6 898 0 1 96 chain 44159 chr7 159138663 + 88990673 88991182 L1PA4 6152 + 4030 4545 63396 416 5 11 88 chain 233302 chr7 159138663 + 89035304 89037945 L1PA5 6144 - 70 2713 17125 1676 1 0 231 0 1 5 0 1 379 0 1 349 chain 88205 chr7 159138663 + 89070681 89071704 L1PA4 6152 - 15 1036 40297 38 0 1 137 0 1 268 2 1 506 6 3 66 chain 81449 chr7 159138663 + 89071704 89072633 L1PA4 6152 + 4172 5105 42842 182 0 4 277 1 0 129 2 1 115 0 1 172 0 1 51 chain 4999 chr7 159138663 + 89074692 89074773 MLT1E3 631 + 546 631 195149 13 11 15 57 chain 176831 chr7 159138663 + 89077415 89079398 L1PA4 6152 - 14 1994 21269 488 0 1 374 4 0 1117 chain 530075 chr7 159138663 + 89088320 89095841 L1PA4 6152 - 1 6146 4179 501 0 1 471 5 0 542 1 2 739 0 1 262 6 21 225 1345 0 76 8 0 57 0 3 508 5 0 540 0 2 257 0 1 859 0 3 244 43 9 251 1 0 3 4 0 249 18 17 301 chain 120100 chr7 159138663 + 89091090 89092417 L1PA2 6032 - 14 1340 30988 328 1 0 998 chain 6862 chr7 159138663 + 89101762 89102084 MLT1B 390 + 55 379 178484 46 218 220 58 chain 9010 chr7 159138663 + 89110489 89110590 L1PA5 6144 + 6029 6130 165539 101 chain 22244 chr7 159138663 + 89120241 89120509 AluY 311 + 36 301 119144 96 12 9 160 chain 39433 chr7 159138663 + 89134203 89134639 L1PA4 6152 - 1 438 70113 147 0 1 289 chain 53997 chr7 159138663 + 89134639 89135256 L1P1 4361 + 3711 4328 56366 439 1 0 130 0 2 23 1 0 23 chain 79977 chr7 159138663 + 89151275 89152200 L1PA4 6152 - 2480 3410 43607 109 0 1 405 15 17 11 0 1 243 0 1 142 chain 74893 chr7 159138663 + 89152202 89153073 L1PA4 6152 - 3410 4280 46066 833 2 1 36 chain 216771 chr7 159138663 + 89153074 89155535 L1PA4 6152 + 3676 6138 18071 1831 0 1 384 1 0 146 0 1 99 chain 10541 chr7 159138663 + 89168979 89169099 L1PA7 6471 - 6351 6471 158084 120 chain 508177 chr7 159138663 + 89169102 89176288 L1PA7 6471 + 125 6470 6307 253 0 1 27 1 2 246 0 1 524 1 0 170 15 16 630 4 0 172 1 2 40 0 1 313 0 2 58 5 6 50 0 2 455 0 4 397 1 0 26 0 1 6 0 2 12 0 4 203 0 10 72 7 1 8 0 6 22 7 6 115 1 0 23 0 1 92 0 5 94 0 2 107 0 1 110 0 1 242 1 9 152 2 1 154 0 1 511 879 0 116 0 1 7 2 0 720 0 1 81 10 7 27 1 0 13 chain 76375 chr7 159138663 + 89174437 89175311 MER11D 897 - 0 897 45278 287 1 24 586 chain 41028 chr7 159138663 + 89204864 89205322 L1PA4 6152 + 5530 5988 67862 458 chain 12911 chr7 159138663 + 89205331 89205476 L1PA4 6152 + 5996 6141 148586 145 chain 80965 chr7 159138663 + 89230084 89231133 MER11A 1151 - 0 1151 43208 209 5 6 20 0 1 53 5 28 24 25 5 436 0 2 74 0 2 60 6 10 22 2 0 21 8 0 24 0 99 55 chain 136972 chr7 159138663 + 89238296 89239960 L1PA7 6471 - 1211 2877 26646 352 0 1 73 3 2 336 13 15 404 2 1 469 0 1 12 chain 2265 chr7 159138663 + 89239964 89239988 L1PA7 6471 + 5278 5302 235787 24 chain 25618 chr7 159138663 + 89239988 89240283 L1PA7 6471 + 5303 5599 101631 268 0 1 27 chain 57400 chr7 159138663 + 89240284 89240975 L1PA7 6471 + 5604 6298 54287 263 0 3 266 0 1 138 7 6 17 chain 11952 chr7 159138663 + 89240994 89241142 L1PA7 6471 + 6317 6469 152399 136 1 5 11 chain 37927 chr7 159138663 + 89253468 89253943 LTR10F 562 + 2 562 72238 104 0 84 45 0 3 19 1 0 24 2 1 280 chain 183911 chr7 159138663 + 89256748 89259239 HERVIP10FH-int 2884 + 149 2567 20597 64 14 4 26 0 3 153 3 0 197 1 0 400 0 2 174 1 0 21 2 1 14 2 0 172 4 1 7 3 0 11 1 0 7 1 0 63 9 4 122 4 0 12 49 32 12 7 1 14 23 6 38 21 9 39 17 6 15 5 4 137 0 1 129 1 0 35 0 14 128 0 4 19 1 0 24 1 0 106 0 1 153 0 4 29 chain 21966 chr7 159138663 + 89273528 89273765 L1PA2 6032 + 5790 6028 120367 96 0 1 141 chain 17713 chr7 159138663 + 89274283 89274505 MER47A 366 - 77 300 133669 110 0 1 112 chain 29978 chr7 159138663 + 89297575 89298192 L1PA13 3608 + 116 703 84882 16 100 86 56 19 17 124 1 0 13 2 1 16 2 0 14 28 25 16 3 1 15 6 4 12 1 0 98 2 0 73 chain 389217 chr7 159138663 + 89298286 89303353 L1PA7 6471 - 10 4799 10474 133 8 0 9 1 9 171 1 2 4 1 0 101 0 7 398 7 5 224 0 1 763 1 0 131 0 8 216 0 2 229 5 6 39 0 1 223 0 1 198 0 3 21 4 8 45 1 0 869 0 2 146 3 2 330 305 0 275 9 11 196 chain 69318 chr7 159138663 + 89303361 89304212 L1PA7 6471 + 809 1670 48673 102 3 6 5 3 0 246 0 1 41 0 4 160 0 1 12 0 3 221 0 1 58 chain 100567 chr7 159138663 + 89311650 89312774 L1PA3long 6157 + 5032 6157 36613 163 0 1 961 chain 24988 chr7 159138663 + 89337195 89337486 AluYk4 311 + 10 302 104873 70 0 1 221 chain 4576 chr7 159138663 + 89346578 89346707 MER58B 340 - 156 293 199922 41 59 67 29 chain 105625 chr7 159138663 + 89348028 89349482 L1P2 5180 + 2 1458 35344 148 2 1 49 1 0 35 0 1 8 8 7 55 5 8 123 0 1 8 19 0 69 1 0 50 1 0 218 4 19 291 32 36 191 3 5 133 chain 40607 chr7 159138663 + 89360883 89361377 LTR3B_ 500 - 0 494 68426 494 chain 23642 chr7 159138663 + 89375429 89375695 AluYc 301 + 0 264 112345 122 2 0 142 chain 25887 chr7 159138663 + 89417917 89418277 L1PA7 6471 - 2 370 100493 12 0 2 132 3 5 11 7 10 68 2 3 125 chain 332699 chr7 159138663 + 89418299 89421936 L1PA2 6032 - 0 3641 12099 2965 0 4 672 chain 140472 chr7 159138663 + 89489980 89492122 HUERS-P3b-int 2065 + 13 2031 26075 80 4 0 202 4 0 21 75 0 84 2 1 179 3 0 135 0 1 4 17 16 34 13 12 23 0 5 9 49 45 203 0 1 403 1 0 44 25 2 21 8 9 54 2 0 13 1 0 24 1 0 90 3 1 69 26 22 59 25 21 43 1 0 88 chain 3936 chr7 159138663 + 89522532 89522602 L1ME2 1516 - 890 960 208318 22 6 7 6 1 0 35 chain 9658 chr7 159138663 + 89524570 89524682 L1PA5 6144 + 6027 6139 162308 112 chain 3091 chr7 159138663 + 89525798 89526166 L1PA4 6152 - 9 370 57164 134 7 0 227 chain 489233 chr7 159138663 + 89526234 89531707 L1PA3long 6157 - 15 6153 7398 657 1 2 169 0 4 880 0 8 128 0 2 2716 0 1 326 0 1 339 0 128 10 0 1 57 7 0 91 0 526 92 chain 3057 chr7 159138663 + 89531713 89532077 L1PA4 6152 - 370 735 57164 106 0 1 258 chain 14658 chr7 159138663 + 89532077 89532238 L1PA4 6152 + 5241 5402 141533 161 chain 3259 chr7 159138663 + 89533854 89533892 MER115 684 + 590 628 219794 38 chain 3494 chr7 159138663 + 89540711 89540753 Tigger13a 716 + 155 198 215451 38 0 1 4 chain 16885 chr7 159138663 + 89557551 89557765 MER30 238 - 9 238 135878 115 0 15 99 chain 29094 chr7 159138663 + 89598879 89599188 AluYa5 310 - 1 310 88577 309 chain 166339 chr7 159138663 + 89612947 89614854 L1PA4 6152 - 9 1919 22481 130 0 5 9 7 0 1279 0 3 357 1 3 124 chain 16378 chr7 159138663 + 89620940 89621119 L1PA5 6144 + 5721 5900 137262 179 chain 13062 chr7 159138663 + 89625204 89625555 THE1B 368 - 12 368 147982 105 178 183 68 chain 3026 chr7 159138663 + 89658938 89659123 L1MC5 759 + 308 507 224445 24 124 142 9 3 0 19 1 0 5 chain 14555 chr7 159138663 + 89665396 89665574 L1PA7 6471 - 448 626 142720 178 chain 38176 chr7 159138663 + 89665574 89666024 L1PA7 6471 + 6021 6470 71875 292 0 1 52 2 0 104 chain 16324 chr7 159138663 + 89671156 89671353 L1PA4 6152 - 0 204 137422 6 0 5 137 2 4 52 chain 12500 chr7 159138663 + 89671353 89671491 L1PA4 6152 + 5820 5958 150237 138 chain 17638 chr7 159138663 + 89677608 89677899 THE1B 368 + 2 306 133885 102 14 15 50 1 0 21 19 24 10 8 16 66 chain 100110 chr7 159138663 + 89692265 89693444 L1PA6 6164 - 2 1190 36743 52 0 4 113 2 1 160 0 1 515 0 4 185 0 1 152 chain 477178 chr7 159138663 + 89699620 89706356 L1PA5 6144 + 354 6144 7824 207 6 5 110 0 3 132 0 17 81 17 10 26 25 0 203 29 21 25 0 1 1104 1 0 4 1 2 912 1 2 135 0 1 147 2 0 239 1 0 7 1 2 122 1 0 29 8 4 311 5 1 90 937 0 322 0 5 319 0 1 149 0 1 189 2 1 308 4 0 351 2 20 171 chain 86701 chr7 159138663 + 89703618 89704539 L1HS 6032 + 5108 6029 40791 921 chain 2927 chr7 159138663 + 89707352 89707411 MLT1B 390 + 287 348 226562 24 17 19 18 chain 21053 chr7 159138663 + 89726342 89726605 AluY 311 + 36 299 123716 87 8 4 141 0 4 27 chain 16969 chr7 159138663 + 89742576 89742812 MER75B 242 + 2 235 135673 27 1 3 24 4 1 169 2 0 9 chain 69542 chr7 159138663 + 89744942 89745707 L1PA5 6144 + 5373 6138 48592 765 chain 3307 chr7 159138663 + 89746175 89746216 MADE1 96 - 55 96 218827 41 chain 32867 chr7 159138663 + 89755087 89755541 L1PA8 5853 + 5415 5853 79427 149 1 0 47 2 0 68 1 0 6 13 3 52 27 25 88 chain 13062 chr7 159138663 + 89764440 89764645 THE1D-int 1627 - 0 207 147987 72 2 4 20 11 17 8 6 0 86 chain 21390 chr7 159138663 + 89782216 89782449 SVA_D 2077 + 1835 2068 122542 233 chain 3980 chr7 159138663 + 89788057 89788105 Tigger3b 1229 - 1127 1175 207690 48 chain 6264 chr7 159138663 + 89802968 89803105 MLT1C 463 + 20 152 183057 68 3 4 13 39 33 14 chain 118276 chr7 159138663 + 89814503 89815827 L1PA5 6144 + 4515 5845 31699 255 0 1 329 0 1 196 0 4 544 chain 256841 chr7 159138663 + 89831410 89834270 L1PA3long 6157 + 3289 6149 15891 1415 10 11 1425 1 0 9 chain 14540 chr7 159138663 + 89860793 89861031 Tigger3a 397 - 70 396 142762 13 20 58 117 16 66 72 chain 23493 chr7 159138663 + 89878383 89878747 THE1D 372 + 2 372 113161 126 0 4 34 45 45 41 5 7 113 chain 34420 chr7 159138663 + 89885442 89885851 L1PA7 6471 + 6059 6470 77030 40 0 1 289 0 1 80 chain 21625 chr7 159138663 + 89894140 89894405 AluSc 308 - 43 308 121674 111 2 0 5 0 2 147 chain 3416 chr7 159138663 + 89903944 89903981 tRNA-Gln-CAG 43 + 0 37 216846 37 chain 13075 chr7 159138663 + 89944036 89944186 L1PA3long 6157 - 0 150 147935 150 chain 8920 chr7 159138663 + 89953486 89953582 L1PA4 6152 + 6055 6151 166026 96 chain 17534 chr7 159138663 + 89957160 89957364 L1PA5 6144 - 0 213 134173 37 0 9 167 chain 3289 chr7 159138663 + 89958451 89958487 MLT2B1 522 - 4 40 219207 36 chain 8141 chr7 159138663 + 89964200 89964382 LTR12C 1709 + 933 1037 170288 89 78 0 15 chain 7800 chr7 159138663 + 89966224 89966339 LOR1b 457 - 299 418 172308 44 16 20 55 chain 15555 chr7 159138663 + 89966910 89967115 MSTA-int 1630 + 1420 1630 139715 113 6 11 86 chain 45403 chr7 159138663 + 89979238 89979803 L1PA6 6164 - 2 585 62591 8 2 0 178 0 3 6 1 0 111 0 16 8 0 1 234 4 5 13 chain 492656 chr7 159138663 + 89988468 89994583 L1PA6 6164 - 2 6164 7239 29 0 4 137 0 2 33 1 3 411 10 9 105 5 9 573 0 3 5 3 0 123 0 2 6 1 0 237 0 3 189 0 3 229 1 0 74 0 2 274 0 1 10 1 3 492 2 1 1997 9 18 132 6 5 74 0 25 86 0 2 90 24 26 216 0 2 6 9 11 46 0 1 41 0 1 5 5 1 205 0 1 80 21 7 112 chain 331777 chr7 159138663 + 89994592 89999265 L1P2 5180 - 852 5178 12137 78 319 3 38 0 1 158 3 4 354 23 10 384 1 0 64 26 19 32 1 0 477 1 4 123 0 4 1056 16 11 69 1 0 53 5 1 184 0 1 220 0 1 181 0 15 173 0 1 39 8 7 13 7 7 28 1 0 68 19 0 52 5 3 141 8 7 41 6 5 47 18 17 19 8 8 105 chain 28929 chr7 159138663 + 89994678 89994989 AluYa5 310 - 0 310 89331 184 1 0 126 chain 93490 chr7 159138663 + 90052728 90053798 MER11C 1089 + 2 1073 38511 21 1 0 446 0 1 127 0 1 475 chain 10802 chr7 159138663 + 90055313 90055482 L1PB4 2604 + 2377 2548 156976 8 2 0 15 19 23 125 chain 68822 chr7 159138663 + 90077293 90078116 L1PA6 6164 + 5327 6151 48886 675 1 6 5 4 0 138 chain 9973 chr7 159138663 + 90088597 90088742 L1M1 2793 - 1144 1272 160708 42 17 0 86 chain 27411 chr7 159138663 + 90094428 90094782 THE1C 375 + 0 352 94929 22 0 1 102 3 0 59 1 2 76 1 0 90 chain 6619 chr7 159138663 + 90116859 90116936 L1PA8 5853 + 5776 5853 180310 77 chain 29735 chr7 159138663 + 90135016 90135334 AluYb8 318 + 0 318 85710 318 chain 123885 chr7 159138663 + 90151679 90153032 L1PA2 6032 - 0 1355 29738 775 0 2 578 chain 4753 chr7 159138663 + 90153032 90153085 L1P1 4361 + 3812 3865 195901 53 chain 182008 chr7 159138663 + 90154698 90156760 L1PA4 6152 - 0 2063 20783 149 0 1 1913 chain 6974 chr7 159138663 + 90160494 90160577 MER2 342 - 127 210 177654 83 chain 496840 chr7 159138663 + 90174729 90180979 L1PA6 6164 - 12 6164 7018 407 9 10 342 0 2 681 1 2 449 4 5 35 0 1 273 1 2 118 0 1 91 0 1 542 0 1 489 0 3 138 0 1 146 0 2 84 0 1 275 4 5 403 161 0 309 0 7 13 1 27 379 0 4 98 1 18 220 1 0 68 2 1 49 16 8 29 17 18 394 chain 13506 chr7 159138663 + 90179234 90179382 L1PA5 6144 - 1 149 146341 148 chain 28448 chr7 159138663 + 90228018 90228317 AluYa5 310 - 11 310 91380 299 chain 16133 chr7 159138663 + 90232688 90232911 Tigger3a 397 + 158 384 137958 178 14 17 31 chain 552297 chr7 159138663 + 90263451 90269584 L1PA3long 6157 - 0 6157 1159 287 0 3 1922 0 1 1440 0 1 210 0 4 1214 0 3 466 0 12 594 chain 153181 chr7 159138663 + 90278797 90280564 L1PA6 6164 - 20 1792 24203 406 0 2 358 0 1 258 0 1 344 0 1 401 chain 36927 chr7 159138663 + 90282990 90283427 L1PA5 6144 - 6 444 73621 138 2 3 297 chain 89502 chr7 159138663 + 90293262 90294263 L1PA4 6152 + 5146 6151 39807 152 0 4 849 chain 7175 chr7 159138663 + 90300167 90300260 MSTA-int 1630 - 13 105 176242 4 1 0 88 chain 21153 chr7 159138663 + 90329440 90329694 AluSc5 308 - 43 297 123362 254 chain 511842 chr7 159138663 + 90359189 90365596 L1PA7 6471 - 2 6471 5995 10 3 0 141 1 20 598 0 2 68 0 3 5 3 0 323 0 1 99 1 0 74 0 1 131 6 17 166 0 2 274 0 1 271 0 1 4 1 0 723 0 1 430 1 5 218 12 29 131 0 1 17 2 0 6 0 2 29 0 9 15 0 2 118 1 3 60 3 1 1243 5 9 169 20 21 133 1 0 84 1 0 69 1 0 7 1 0 1 11 0 89 17 18 272 0 1 144 2 1 42 0 4 150 chain 75945 chr7 159138663 + 90373322 90374218 SVA_D 2077 - 5 1259 45517 8 10 0 111 0 1 410 0 225 240 0 51 59 13 20 24 0 84 21 chain 15978 chr7 159138663 + 90392941 90393127 L1PA6 6164 + 5966 6152 138415 186 chain 181164 chr7 159138663 + 90409742 90411761 L1PA3long 6157 - 0 2030 20885 220 1 23 33 0 1 443 13 0 1133 0 1 176 chain 22434 chr7 159138663 + 90414846 90415121 AluY 311 + 28 302 118324 105 1 0 169 chain 86299 chr7 159138663 + 90423301 90424324 MER11B 1079 - 37 1079 41044 269 1 3 436 1 18 316 chain 534208 chr7 159138663 + 90435805 90441943 L1PA4 6152 + 9 6152 3688 867 0 1 365 16 17 686 1 0 459 4 0 664 1 0 114 0 3 661 6 5 277 0 6 1166 0 1 851 chain 62321 chr7 159138663 + 90444613 90445394 L1PA8 5853 + 5074 5849 51746 170 0 1 319 1 0 44 2 0 70 2 1 8 1 0 53 2 1 19 1 0 89 chain 6091 chr7 159138663 + 90449415 90449524 MER53 195 - 27 189 184488 36 1 0 19 13 67 40 chain 19556 chr7 159138663 + 90449632 90449995 THE1D 372 + 0 372 128503 100 119 128 144 chain 78475 chr7 159138663 + 90467373 90468473 MER11A 1151 + 0 1151 44283 79 11 19 40 0 1 60 2 0 28 0 4 58 8 5 18 0 4 366 20 24 37 0 4 70 0 1 15 0 1 26 0 31 95 13 12 87 1 0 24 1 0 27 1 2 13 chain 30296 chr7 159138663 + 90503824 90504142 AluYb9 318 - 0 318 83944 318 chain 9193 chr7 159138663 + 90508950 90509067 L1PA6 6164 + 6045 6160 164588 25 0 1 83 3 0 6 chain 392428 chr7 159138663 + 90510230 90515331 L1PA8A 6298 + 1145 6289 10379 266 1 0 121 0 1 6 22 18 71 0 1 7 1 11 385 1 0 4 0 1 269 0 1 172 0 1 21 7 0 125 2 0 116 0 1 161 13 12 49 0 4 384 13 9 202 1 0 117 5 16 4 1 0 173 3 4 247 14 15 226 1 5 450 1 0 39 3 4 294 3 2 322 21 22 25 0 4 9 0 1 25 0 2 130 1 4 17 1 2 11 10 19 314 1 5 79 1 3 28 0 2 105 chain 3961 chr7 159138663 + 90532600 90532662 L1MA4A 3247 + 3148 3207 207974 31 3 0 28 chain 8517 chr7 159138663 + 90543129 90543274 LTR48B 642 - 476 611 168211 69 0 1 4 20 6 18 3 6 31 chain 126127 chr7 159138663 + 90556981 90558654 L1P2 5180 - 3479 5178 29057 459 1 0 287 0 25 138 13 11 266 1 0 8 1 0 84 0 1 73 4 25 9 6 0 3 15 0 62 23 17 81 0 11 139 chain 28855 chr7 159138663 + 90583928 90584239 AluYa5 310 - 0 310 89646 184 1 0 126 chain 18420 chr7 159138663 + 90586650 90586864 L1P1 4361 + 4116 4328 131712 34 1 0 155 1 0 23 chain 17975 chr7 159138663 + 90600246 90600474 L1PA4 6152 - 0 260 132925 84 8 16 81 0 17 46 0 7 9 chain 9660 chr7 159138663 + 90606249 90606372 L1MA5A 2387 - 966 1104 162301 6 0 1 96 0 14 21 chain 33654 chr7 159138663 + 90612175 90612696 L1PA16 3655 + 2903 3416 78164 236 15 10 55 1 0 43 56 54 115 chain 3162 chr7 159138663 + 90650045 90650080 MLT1E1A 663 - 25 60 221714 35 chain 28731 chr7 159138663 + 90665148 90665456 AluYb8 318 - 9 317 90202 308 chain 46631 chr7 159138663 + 90673340 90673996 MER4B 649 - 9 649 61515 7 1 0 71 1 0 256 9 0 79 6 1 76 1 0 5 5 6 18 5 6 6 1 0 109 chain 540247 chr7 159138663 + 90685729 90691863 L1PA4 6152 - 0 6152 2780 6 0 5 833 0 4 1304 0 2 59 0 1 1440 0 1 33 0 1 75 0 4 71 2 1 322 1 2 1988 chain 372547 chr7 159138663 + 90701581 90706972 L1PA8 5853 + 445 5852 11009 78 337 330 24 21 20 50 3 2 67 0 2 127 1 0 9 8 8 192 0 13 185 0 5 173 1 0 154 0 2 87 0 1 6 0 1 36 3 1 32 1 0 224 0 4 129 41 40 40 1 0 220 4 6 157 2 1 43 1 0 20 1 5 16 0 6 145 6 7 374 0 23 176 8 9 639 3 0 135 31 3 275 0 1 4 8 7 126 5 9 11 12 7 95 0 2 134 0 2 421 1 0 38 1 4 70 2 1 13 5 3 45 2 1 19 1 0 92 chain 5582 chr7 159138663 + 90719762 90719844 MER3 215 + 117 205 189251 38 1 7 43 chain 11506 chr7 159138663 + 90727688 90727825 L1PA5 6144 + 6002 6144 154270 124 0 5 13 chain 542731 chr7 159138663 + 90802758 90808832 L1HS 6032 + 1 6031 2386 256 1 0 1567 1 0 1172 0 1 2179 0 4 347 0 1 126 47 0 212 5 0 7 0 5 140 1 0 13 chain 45054 chr7 159138663 + 90843061 90843591 L1PA4 6152 - 9 540 62989 96 8 9 36 1 0 101 0 1 288 chain 175608 chr7 159138663 + 90844003 90845950 L1PA3long 6157 - 5 1955 21386 261 0 2 235 0 1 335 0 1 682 1 0 433 chain 158416 chr7 159138663 + 90845951 90847672 L1PA3long 6157 + 2520 4242 23541 604 0 1 1117 chain 461088 chr7 159138663 + 90882068 90887650 L1PA7 6471 - 10 6470 8358 762 0 2 76 1 0 253 2 1 23 0 13 296 0 2 182 0 1 574 0 1 73 0 1 191 0 2 428 3 8 575 2 0 104 0 4 133 0 4 184 0 1 45 0 2 96 2 5 247 0 54 74 0 1 549 0 787 49 1 2 7 1 0 37 5 4 607 chain 28508 chr7 159138663 + 90921425 90921845 MER1A 529 + 102 528 91154 87 33 34 144 0 4 83 16 17 57 chain 22575 chr7 159138663 + 90937689 90937976 L1PA7 6471 + 6184 6466 117692 138 1 0 71 6 5 61 3 0 7 chain 4498 chr7 159138663 + 90946323 90946375 L1PA8 5853 + 5795 5847 200801 52 chain 115873 chr7 159138663 + 90961367 90962645 L1PA3long 6157 - 0 1279 32505 839 0 1 439 chain 42424 chr7 159138663 + 90994381 90994906 MER41A 554 + 0 554 66112 397 8 12 48 0 24 44 0 1 28 chain 8440 chr7 159138663 + 91003871 91003996 MER85 139 + 5 139 168621 91 16 25 18 chain 539255 chr7 159138663 + 91018808 91024822 L1PA3long 6157 - 1 6157 2939 842 0 4 165 0 9 1001 0 1 1820 2 0 1074 0 2 334 0 128 463 1 0 160 0 1 152 chain 119835 chr7 159138663 + 91031242 91032976 L1PB2 3958 - 120 1833 31109 12 4 8 43 1 0 22 2 0 11 1 0 25 0 1 37 3 2 60 1 0 60 15 12 72 0 4 14 1 0 4 1 0 12 2 0 65 5 0 11 8 7 49 2 0 128 6 5 25 5 6 181 1 0 38 1 0 137 11 0 6 0 1 27 8 7 234 53 57 330 chain 28984 chr7 159138663 + 91035391 91035798 L1P1 4361 + 3455 3790 89071 151 72 0 184 chain 27901 chr7 159138663 + 91047665 91047974 L1PA4 6152 - 13 322 93363 309 chain 470399 chr7 159138663 + 91079432 91085246 HERV9-int 5642 - 0 5642 8019 17 2 0 3 4 0 19 28 5 13 1 0 60 2 1 20 7 5 39 2 1 114 0 8 105 4 6 381 10 22 810 2 0 9 0 2 803 0 1 360 0 2 487 0 6 607 0 1 629 3 0 32 80 0 55 86 0 215 10 9 795 chain 3361 chr7 159138663 + 91084156 91084212 HERV9-int 5642 - 4638 4779 217873 13 5 90 38 chain 50081 chr7 159138663 + 91085274 91086224 LTR12 884 - 0 884 58959 80 322 0 96 0 102 206 0 22 37 0 132 209 chain 8904 chr7 159138663 + 91088973 91089098 Tigger3 1187 - 281 407 166121 97 0 1 10 6 6 12 chain 7551 chr7 159138663 + 91093393 91093475 AluYf4 310 + 222 304 173866 82 chain 81295 chr7 159138663 + 91099991 91101253 L1PB1 5432 - 2 1232 43043 5 1 0 7 1 0 12 8 7 6 1 0 23 1 0 24 2 0 14 1 0 5 5 3 16 24 12 12 5 9 39 1 0 17 1 0 51 2 0 9 6 2 13 2 1 5 1 0 25 1 0 6 5 4 287 7 6 176 9 7 273 7 8 146 chain 549901 chr7 159138663 + 91105999 91112133 L1PA3long 6157 - 11 6157 1459 846 1 0 22 0 1 196 0 1 3888 0 3 474 0 7 399 7 8 301 chain 131742 chr7 159138663 + 91117443 91118915 L1PA3long 6157 - 0 1489 27688 856 0 1 104 0 16 512 chain 32751 chr7 159138663 + 91118915 91119272 L1P1 4361 + 3917 4273 79030 233 1 0 123 chain 12512 chr7 159138663 + 91119277 91119434 Tigger4 2445 - 1869 2026 150200 157 chain 9296 chr7 159138663 + 91126121 91126430 L1PB1 5432 - 12 329 24819 16 1 0 13 1 0 21 1 0 24 2 0 11 11 8 18 13 5 8 3 0 16 1 0 19 6 49 45 2 0 8 21 12 13 1 0 16 4 1 14 chain 239715 chr7 159138663 + 91126442 91129275 L1PA7 6471 - 1 2831 16789 856 3 0 665 2 1 369 0 1 7 1 0 84 1 2 845 chain 53488 chr7 159138663 + 91129279 91131057 L1PB1 5432 - 329 2106 24819 170 0 6 306 3 0 150 9 0 39 0 1 155 0 1 312 8 11 231 2 0 108 0 2 285 chain 549788 chr7 159138663 + 91136057 91142179 L1PA3long 6157 + 4 6157 1474 706 0 7 383 0 19 2072 1 0 1162 0 4 947 0 4 498 0 1 18 1 0 327 2 0 5 chain 23340 chr7 159138663 + 91158045 91158310 AluY 311 + 38 304 113978 94 0 1 171 chain 319085 chr7 159138663 + 91158358 91163304 L1PB1 5432 + 845 5422 12632 59 4 5 309 0 1 109 10 10 39 2 0 5 33 37 743 6 5 101 0 3 62 15 14 99 9 13 33 0 1 93 0 1 4 0 2 8 0 1 157 20 21 60 1 2 49 7 10 106 12 8 44 27 35 377 3 5 243 5 8 175 0 10 716 0 1 6 2 1 92 0 1 96 2 17 37 4 0 6 0 1 71 0 11 122 489 80 50 2 1 16 1 0 45 1 0 5 37 26 13 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 21101 chr7 159138663 + 91172215 91172520 L1MA2 4263 + 3819 4114 123548 137 2 1 9 1 0 91 8 1 47 1 0 9 chain 18405 chr7 159138663 + 91203921 91204259 L1PB1 5432 - 21 327 131762 7 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 10 1 12 1 0 15 1 0 43 1 0 16 2 1 53 21 15 5 1 0 9 1 0 21 3 0 12 chain 61790 chr7 159138663 + 91205420 91206342 L1PB 1623 - 53 909 52002 17 52 28 9 1 0 14 5 1 13 3 0 4 1 0 30 2 1 7 1 0 134 44 10 226 0 3 359 chain 550022 chr7 159138663 + 91212585 91218615 L1PA2 6032 + 0 6031 1444 2569 1 0 818 0 2 2642 chain 545535 chr7 159138663 + 91218971 91225109 L1PA3long 6157 + 6 6157 2005 120 0 14 8 14 0 2527 1 0 587 0 1 1087 0 4 137 0 2 147 0 1 1202 1 0 36 0 1 121 4 10 146 chain 3288 chr7 159138663 + 91226309 91226346 MER45B 1037 - 8 45 219242 37 chain 21901 chr7 159138663 + 91245404 91245706 L1MA7 2200 + 1380 1683 120615 173 1 0 67 11 13 50 chain 104202 chr7 159138663 + 91256050 91257271 LTR12C 1709 - 0 1709 35691 24 1 0 457 0 4 21 0 485 138 4 3 78 7 8 491 chain 26796 chr7 159138663 + 91260891 91261175 AluYf4 310 + 19 303 96995 284 chain 4149 chr7 159138663 + 91264552 91264636 MLT1B 390 + 0 85 205253 29 27 28 28 chain 34400 chr7 159138663 + 91264660 91265293 L1MA3 4352 + 3754 4352 77055 59 1 2 55 2 0 7 6 8 19 1 3 113 0 1 71 66 42 102 7 3 20 2 0 23 1 0 28 25 20 14 3 0 8 chain 20250 chr7 159138663 + 91266434 91266660 AluYk4 311 - 11 237 126383 226 chain 27505 chr7 159138663 + 91274718 91275062 L1PA7 6471 - 5 362 94635 41 9 10 256 0 12 38 chain 274229 chr7 159138663 + 91276547 91279677 L1PA4 6152 + 3021 6136 14967 64 26 0 1573 2 1 471 0 9 143 0 4 723 1 0 127 chain 282456 chr7 159138663 + 91329182 91334307 L1PA10 4194 + 417 4161 14509 62 36 26 286 14 19 333 0 1 309 10 11 369 332 5 371 6 5 231 1062 0 165 9 9 10 0 1 39 9 18 15 0 7 233 0 4 121 11 7 56 2 0 318 9 3 397 0 2 51 0 3 146 0 1 31 4 5 29 3 0 34 1 0 11 chain 65230 chr7 159138663 + 91331671 91332385 L1PA2 6032 + 5318 6032 50455 714 chain 48208 chr7 159138663 + 91338931 91339492 L1PA5 6144 - 0 560 60309 11 2 1 548 chain 31273 chr7 159138663 + 91346333 91346670 L1PA2 6032 - 5 342 82033 337 chain 231282 chr7 159138663 + 91362647 91365226 L1PA4 6152 + 3558 6152 17242 307 0 1 1104 0 9 1162 0 5 6 chain 144685 chr7 159138663 + 91385473 91388054 L1PA8A 6298 + 3886 5970 25372 76 21 31 69 0 1 121 612 0 451 9 10 142 1 2 43 1 0 5 0 1 349 0 1 103 12 2 9 0 15 18 0 6 59 0 1 4 0 93 244 1 0 16 13 14 97 6 1 89 0 1 10 chain 490558 chr7 159138663 + 91388512 91394490 L1PA7 6471 + 410 6457 7340 42 7 10 112 3 0 5 5 7 156 10 15 268 8 9 218 0 19 122 0 3 638 0 1 139 0 1 80 0 4 243 1 0 137 0 2 59 1 0 571 0 9 269 1 9 224 0 4 89 0 1 222 12 14 1137 1 0 150 0 1 12 0 8 201 1 0 79 0 2 595 14 14 146 chain 302889 chr7 159138663 + 91419792 91425028 L1PA6 6164 + 0 6159 13286 465 1 0 284 0 1 43 0 17 99 1590 3 81 0 2481 231 1 0 175 1 2 86 0 2 240 1 0 60 3 10 82 0 4 894 0 1 47 1 0 851 chain 137841 chr7 159138663 + 91420697 91422261 L1PA4 6152 - 1 1565 26507 137 4 0 7 0 4 1416 chain 93604 chr7 159138663 + 91436729 91437779 L1PA4 6152 - 27 1082 38474 306 1 2 515 0 4 228 chain 367923 chr7 159138663 + 91448324 91453692 L1PB1 5432 - 10 5415 11156 18 1 0 13 7 6 15 1 0 17 57 39 18 3 0 16 6 5 38 1 0 16 2 1 52 17 11 11 5 4 4 1 0 24 3 0 11 15 5 10 9 27 45 0 2 5 2 0 132 1 2 83 0 1 159 9 4 571 37 37 28 2 0 5 0 2 56 1 0 4 0 1 165 0 1 21 31 15 44 14 37 295 21 14 45 0 1 38 0 1 80 0 38 149 0 1 132 20 19 169 0 3 88 4 5 110 0 1 181 19 20 84 0 1 212 0 5 157 0 1 150 1 0 232 80 81 169 0 1 94 0 1 17 0 1 224 9 8 36 0 2 6 4 6 427 26 30 27 27 39 214 6 0 9 chain 20815 chr7 159138663 + 91462255 91462500 AluSp 311 + 37 282 124552 245 chain 81861 chr7 159138663 + 91468759 91469704 L1PA4 6152 - 0 953 42818 6 0 7 126 1 8 9 7 0 183 1 2 612 chain 75942 chr7 159138663 + 91469704 91470537 L1PA4 6152 + 4362 5204 45355 608 0 9 225 chain 3086 chr7 159138663 + 91474226 91474286 MLT1H 522 - 396 457 223165 34 14 15 12 chain 16238 chr7 159138663 + 91484279 91484489 L1PA17 2846 + 35 245 137655 106 4 3 89 0 1 11 chain 7453 chr7 159138663 + 91500813 91500956 L1MB8 1703 + 1403 1556 174428 18 6 8 17 10 13 20 0 3 35 5 7 32 chain 145944 chr7 159138663 + 91516211 91519027 SVA_A 1864 + 13 1863 25177 15 0 1 734 1 0 76 3 0 14 992 7 17 2 0 10 1 0 26 22 20 46 10 8 33 16 51 74 1 0 26 2 0 37 2 0 37 2 0 212 0 1 405 chain 5091 chr7 159138663 + 91517194 91517529 SVA_F 1814 + 513 1097 194169 17 95 60 10 77 0 36 48 411 17 5 3 30 chain 14361 chr7 159138663 + 91517706 91517976 SVA_F 1814 + 374 848 143337 15 0 3 31 11 128 60 39 0 45 5 8 36 1 121 27 chain 556577 chr7 159138663 + 91532996 91539020 L1PA2 6032 - 5 6029 661 6024 chain 2974 chr7 159138663 + 91553913 91553945 L2a 937 - 554 586 225543 32 chain 89128 chr7 159138663 + 91554322 91555379 MER11C 1089 - 15 1089 39952 9 1 2 291 0 1 33 0 1 45 0 4 371 0 4 62 0 1 20 0 5 225 chain 40414 chr7 159138663 + 91560882 91561439 L1PA8 5853 + 5302 5853 68717 258 7 6 42 2 0 70 2 1 8 4 3 9 1 2 42 1 0 12 10 9 89 chain 4851 chr7 159138663 + 91564327 91564448 L1MA4 2864 + 2725 2809 196768 12 34 8 21 11 0 43 chain 11526 chr7 159138663 + 91597556 91597745 L1MA4 2864 - 2642 2834 154193 21 11 18 75 7 3 46 1 0 12 0 1 16 chain 72421 chr7 159138663 + 91611521 91612361 L1PA6 6164 - 13 859 47293 597 0 3 142 0 3 101 chain 78930 chr7 159138663 + 91613889 91614959 L1PA10 4194 - 44 1134 44093 30 7 4 40 5 4 342 8 25 13 4 5 539 10 13 52 3 6 17 chain 4702 chr7 159138663 + 91625878 91626039 MER82 654 + 477 648 198504 18 74 78 34 6 12 29 chain 54705 chr7 159138663 + 91633946 91634575 L1P1 4361 - 33 717 55895 23 1 0 157 1 0 439 0 57 8 chain 29663 chr7 159138663 + 91642294 91642604 AluYa5 310 - 0 310 85992 310 chain 158481 chr7 159138663 + 91655661 91657622 SVA_A 1864 + 15 1864 23533 312 0 1 325 3 1 105 14 13 115 2 4 22 2 0 44 40 0 141 41 0 46 1 0 173 38 10 537 chain 2820 chr7 159138663 + 91656605 91656645 SVA_A 1864 + 773 810 66184 29 3 0 8 chain 3137 chr7 159138663 + 91656788 91656825 SVA_A 1864 + 1024 1061 77745 37 chain 4499 chr7 159138663 + 91662512 91662561 L1PA4 6152 + 6089 6138 200789 49 chain 3235 chr7 159138663 + 91703172 91703208 L1PA7 6471 + 5291 5327 220320 36 chain 82390 chr7 159138663 + 91703208 91704160 L1PA7 6471 + 5334 6294 42591 280 0 4 178 1 5 493 chain 9683 chr7 159138663 + 91704191 91704311 L1PA7 6471 + 6326 6446 162181 120 chain 35718 chr7 159138663 + 91713143 91713565 L1PA7 6471 - 1 424 75245 150 6 7 266 chain 39079 chr7 159138663 + 91764805 91765304 HERV1_LTRb 511 + 9 511 70634 71 14 12 16 1 3 188 0 2 159 0 1 50 chain 15559 chr7 159138663 + 91765897 91766199 L1PB1 5432 + 5134 5409 139701 13 1 0 7 2 0 5 2 0 8 2 0 53 2 1 15 1 0 44 1 0 16 22 12 19 2 0 5 1 0 11 7 6 21 1 0 21 1 0 13 1 0 5 chain 106988 chr7 159138663 + 91771856 91773202 LTR12C 1709 - 0 1709 34973 52 0 3 426 11 4 4 1 0 36 0 1 50 0 47 59 0 278 138 4 0 141 5 6 83 0 43 34 4 5 38 0 1 260 chain 41818 chr7 159138663 + 91784878 91785433 MLT2A2 560 - 0 556 66870 43 2 0 100 7 18 63 9 1 331 chain 551602 chr7 159138663 + 91813070 91819192 L1PA3long 6157 - 0 6152 1239 671 0 7 171 0 4 270 1 0 394 1 0 237 0 1 706 0 3 269 0 1 214 1 0 815 0 4 585 0 2 219 0 3 251 4 5 276 0 2 166 0 2 307 0 4 251 1 0 312 chain 20852 chr7 159138663 + 91830860 91831147 L1PA7 6471 - 10 296 124454 26 0 9 8 10 1 148 7 6 88 chain 3376 chr7 159138663 + 91882085 91882209 L1MC4 1079 - 916 1008 217547 11 3 0 10 53 5 10 5 24 32 chain 22802 chr7 159138663 + 91884146 91884495 THE1B 368 + 0 366 116567 44 0 15 46 5 0 67 1 0 26 3 0 68 0 3 15 31 39 43 chain 18930 chr7 159138663 + 91899108 91899362 L1PA6 6164 - 2 240 130289 8 7 0 131 7 0 6 0 1 8 4 0 24 0 1 59 chain 6754 chr7 159138663 + 91912914 91913077 Tigger3c 601 + 0 184 179302 18 21 37 19 1 0 8 1 0 23 30 37 42 chain 7189 chr7 159138663 + 91920622 91920756 L1MA3 4352 + 4204 4333 176146 28 4 5 21 2 0 24 2 1 5 1 0 27 1 0 13 1 0 5 chain 55190 chr7 159138663 + 91988402 91989060 L1PA7 6471 - 15 676 55592 4 0 1 555 0 2 99 chain 513641 chr7 159138663 + 92009092 92015199 L1PA6 6164 + 0 6159 5818 44 0 3 256 2 1 66 4 12 22 6 5 26 0 7 66 3 2 393 0 4 49 1 0 195 0 1 207 0 16 959 2 0 36 0 2 27 0 4 1354 0 1 421 0 2 187 0 4 875 0 1 64 0 4 75 1 3 114 2 1 650 chain 2183 chr7 159138663 + 92039226 92039249 L1PA6 6164 + 5447 5470 236719 23 chain 57693 chr7 159138663 + 92039249 92039996 L1PA6 6164 + 5471 6162 54136 136 35 0 4 17 0 545 4 0 6 chain 23841 chr7 159138663 + 92066967 92067255 AluSg7 307 + 20 307 111244 44 2 0 67 0 1 175 chain 73834 chr7 159138663 + 92071898 92073000 MER11A 1151 - 8 1151 46601 19 9 13 127 0 1 23 6 5 31 4 5 35 18 0 11 37 11 26 25 1 145 5 6 145 0 1 90 10 13 141 4 0 60 0 4 52 0 99 79 chain 14830 chr7 159138663 + 92079026 92079222 L1PA8 5853 - 0 195 141842 59 0 2 32 1 0 19 2 1 61 2 1 20 chain 60454 chr7 159138663 + 92097312 92098020 LTR17 781 - 72 781 52606 59 0 1 321 0 1 25 10 0 174 0 9 119 chain 375351 chr7 159138663 + 92100613 92105075 HERV17-int 4347 - 0 4335 10905 219 0 2 1042 0 12 256 0 4 144 0 2 759 1 0 81 0 4 1199 0 2 127 0 3 57 1 33 209 182 0 53 1 0 26 2 0 35 1 0 51 1 0 15 chain 12457 chr7 159138663 + 92104711 92104876 HERV17-int 4347 - 4159 4320 150433 49 1 0 27 2 0 34 2 1 50 chain 64235 chr7 159138663 + 92106726 92107506 LTR17 781 - 0 781 50901 453 0 1 29 12 4 34 7 6 126 0 9 119 chain 19777 chr7 159138663 + 92108515 92108901 LTR7 482 - 7 482 127884 11 2 0 97 1 2 33 11 79 25 3 4 13 62 28 32 0 50 68 4 9 24 chain 239429 chr7 159138663 + 92110413 92113663 HERVH-int 3825 - 0 3336 16801 767 18 16 26 1 0 43 165 0 292 1 0 5 0 1 961 0 2 49 1 2 178 0 1 52 9 0 204 15 0 51 1 4 372 16 285 11 0 2 12 chain 26483 chr7 159138663 + 92114156 92114588 LTR7 482 - 0 482 98103 23 2 0 154 0 2 5 3 34 36 3 4 13 1 11 17 44 0 32 0 50 67 1 3 31 chain 97871 chr7 159138663 + 92170511 92171842 L1MA3 4352 + 2218 3561 37309 14 0 2 14 0 2 63 1 0 39 1 0 13 0 4 34 13 0 3 1 0 31 0 7 13 2 6 120 4 1 463 9 10 121 0 12 122 6 0 110 0 5 134 chain 124693 chr7 159138663 + 92173722 92175170 SVA_B 1603 - 0 1602 29477 549 1 162 40 5 4 159 0 2 491 1 0 149 12 5 41 chain 29153 chr7 159138663 + 92203937 92204241 AluYb8 318 + 0 304 88298 304 chain 3828 chr7 159138663 + 92216649 92216766 L1MC1 2226 + 2009 2123 209957 38 58 55 21 chain 8490 chr7 159138663 + 92222644 92222966 L1MA7 2200 - 42 320 168350 20 48 40 15 5 1 7 3 0 22 10 0 9 89 72 23 3 1 68 chain 8826 chr7 159138663 + 92253598 92253850 MLT1B 390 + 71 325 166518 38 7 16 17 113 106 77 chain 51293 chr7 159138663 + 92315495 92316369 L1PB1 5432 - 34 882 58116 7 1 0 21 2 3 20 6 4 11 1 0 5 3 1 14 9 0 6 2 1 8 4 3 13 1 0 34 0 10 16 2 1 52 2 0 9 2 0 3 2 0 12 7 6 22 3 0 9 17 4 80 0 1 31 0 3 102 1 2 67 6 13 165 17 11 18 1 0 60 chain 9794 chr7 159138663 + 92331021 92331128 U6 107 - 0 107 161622 107 chain 62272 chr7 159138663 + 92387379 92388327 L1PA14 3548 - 63 987 51769 19 1 0 8 9 0 11 0 1 24 0 1 4 31 41 33 4 0 11 1 0 107 5 4 84 14 11 8 4 0 113 2 0 4 2 0 48 2 0 14 3 1 23 3 1 224 2 1 27 3 1 100 chain 143933 chr7 159138663 + 92405230 92407286 L1PA7 6471 - 4 1740 25491 145 2 1 11 0 2 81 1 2 522 1 0 39 2 1 46 0 3 12 1 0 89 0 2 37 8 13 308 332 3 419 chain 8626 chr7 159138663 + 92418002 92418126 L1M4c 1769 + 894 1019 167607 74 10 11 40 chain 21757 chr7 159138663 + 92488289 92488553 AluSc 308 + 37 301 121180 85 0 1 8 2 0 146 0 1 23 chain 115454 chr7 159138663 + 92491701 92493223 THE1B-int 1605 - 6 1568 32625 11 0 1 93 0 1 37 9 10 187 17 18 344 3 4 291 0 1 114 0 1 5 3 2 20 1 27 164 0 2 23 0 6 200 chain 214006 chr7 159138663 + 92515082 92517848 L1PA10 4194 - 44 3788 18226 34 3 0 72 0 11 402 0 1 197 5 10 286 1 0 53 1 3 198 0 966 96 3 1 60 10 9 460 0 1 36 0 4 36 1 0 139 2 0 29 0 1 276 8 7 278 4 2 76 chain 512208 chr7 159138663 + 92522052 92528473 L1PA7 6471 - 10 6471 5953 140 2 0 5 21 19 160 1 0 90 0 1 162 0 1 173 0 1 31 1 0 57 1 0 216 0 1 154 1 4 297 5 4 270 0 4 186 0 5 119 0 1 358 1 0 168 1 0 348 8 2 38 0 4 78 1 0 264 0 4 234 23 14 207 15 0 281 1 0 319 1 0 241 0 8 68 0 1 26 18 0 343 6 5 489 0 4 138 0 47 16 0 1 244 15 0 238 49 80 92 chain 6047 chr7 159138663 + 92528902 92529020 L1MB8 1703 - 1497 1610 184832 33 0 27 12 32 0 41 chain 446028 chr7 159138663 + 92548548 92554107 L1PA7 6471 - 5 5599 8873 7 4 0 5 0 1 143 0 2 550 0 3 138 0 3 195 0 6 69 12 19 1058 6 0 781 0 1 65 0 2 760 0 1 24 5 6 874 2 0 192 1 0 197 1 2 5 1 0 284 40 61 140 chain 17041 chr7 159138663 + 92554443 92554670 L1PA7 6471 - 6239 6466 135490 227 chain 10840 chr7 159138663 + 92564123 92564277 L1PA8 5853 + 5701 5853 156829 26 18 17 16 1 0 93 chain 20730 chr7 159138663 + 92572003 92572368 THE1B 368 + 0 368 124857 34 1 0 74 14 15 46 49 45 18 3 11 75 2 1 49 chain 370856 chr7 159138663 + 92586426 92590722 L1PA5 6144 + 1813 6143 11061 24 0 4 98 2 1 34 1 0 336 7 0 266 0 2 571 0 6 85 0 7 524 0 1 215 1 4 340 0 6 6 0 6 137 0 4 793 0 2 525 0 2 331 chain 21389 chr7 159138663 + 92600332 92600604 7SLRNA 320 - 38 311 122546 130 1 2 141 chain 27131 chr7 159138663 + 92633471 92633872 MER57A1 433 + 0 433 95831 72 30 0 11 0 30 127 0 29 12 0 2 7 2 1 42 0 2 98 chain 118145 chr7 159138663 + 92648838 92650190 L1PA5 6144 - 0 1352 31753 11 1 3 19 1 0 817 1 0 502 chain 71157 chr7 159138663 + 92651923 92652857 LTR12 884 - 15 884 47863 387 7 8 96 2 0 182 64 0 196 chain 4735 chr7 159138663 + 92652597 92652661 LTR12 884 - 754 795 134353 40 23 0 1 chain 30051 chr7 159138663 + 92658707 92659092 MLT2A1 477 + 0 384 84641 169 4 1 11 4 5 18 0 1 179 chain 177330 chr7 159138663 + 92661234 92664093 L1PREC2 3366 + 209 3037 21222 24 2 1 9 3 2 12 2 0 32 1 0 111 1 0 27 62 55 170 8 12 78 8 7 107 63 44 9 0 19 81 2 1 103 0 1 76 0 1 56 1 2 30 14 16 15 0 3 27 0 4 208 0 7 14 17 19 9 1 0 94 0 3 27 6 10 31 7 1 4 0 1 188 0 4 48 8 12 177 6 12 92 2 1 52 1 0 33 0 1 347 0 7 6 2 0 10 10 0 18 21 27 37 1 0 6 1 0 4 13 0 13 29 21 16 7 2 15 3 1 29 37 20 28 7 0 7 6 4 27 chain 24068 chr7 159138663 + 92680516 92680791 L1PA4 6152 - 9 284 109939 275 chain 9711 chr7 159138663 + 92688337 92688483 Tigger1 2417 - 1329 1517 162030 37 12 54 97 chain 533614 chr7 159138663 + 92696812 92703263 L1PA4 6152 - 0 6146 3750 8 0 1 146 0 1 111 1 3 566 1 2 318 0 1 125 1 0 205 0 1 35 1 0 946 0 1 505 1 0 337 319 0 922 0 5 1545 0 1 34 0 3 324 chain 285731 chr7 159138663 + 92706365 92710363 L1PA10 4194 + 175 4104 14302 14 3 0 12 70 58 12 2 0 16 1 0 7 54 28 13 2 0 21 4 3 4 1 0 11 1 0 8 1 0 13 7 0 8 2 1 80 2 0 14 1 8 340 0 1 127 19 22 233 10 4 44 8 9 225 17 18 353 52 24 109 1 2 233 5 10 366 1 2 196 0 1 4 1 0 79 2 0 687 4 8 86 0 1 44 0 2 368 chain 4591 chr7 159138663 + 92714156 92714210 L1PB4 2604 + 1595 1649 199733 54 chain 524173 chr7 159138663 + 92737648 92743759 L1PA5 6144 + 0 6131 4752 135 10 24 389 0 1 619 10 1 46 4 5 973 0 2 981 1 0 428 1 0 77 0 3 44 0 1 523 0 3 861 0 1 154 1 5 48 0 2 133 2 1 412 7 6 111 0 1 141 chain 477401 chr7 159138663 + 92750861 92756815 L1PA7 6471 + 517 6470 7818 346 0 1 101 7 0 852 11 10 66 8 12 93 0 2 674 0 1 61 1 0 260 1 6 374 1 2 106 1 2 5 1 0 27 4 5 26 0 4 16 0 1 42 2 1 389 2 0 63 0 4 538 0 2 339 2 1 5 0 1 111 4 0 52 16 1 71 6 0 178 0 1 74 0 1 40 0 1 136 1 0 241 0 1 13 0 1 71 5 7 334 6 9 141 0 1 30 chain 95576 chr7 159138663 + 92756828 92758207 MER4-int 2692 + 1428 2692 37937 425 0 1 8 0 1 57 154 33 52 1 0 496 1 5 164 1 2 20 chain 33416 chr7 159138663 + 92758215 92758668 MER4A1 472 + 0 472 78539 22 8 0 3 2 0 200 5 27 94 0 7 119 chain 29130 chr7 159138663 + 92789398 92789763 THE1C 375 + 0 364 88408 350 1 0 14 chain 270910 chr7 159138663 + 92795917 92800177 L1P2 5180 - 1178 5175 15144 55 0 1 13 4 5 221 9 7 4 0 1 14 0 11 155 1 0 725 0 4 349 0 3 68 0 1 250 23 13 250 0 1 558 13 13 15 17 18 25 0 13 132 34 37 58 23 42 138 0 15 26 56 37 153 152 65 35 43 24 18 404 206 74 6 5 139 chain 8255 chr7 159138663 + 92879722 92879818 L1PA7 6471 + 5169 5265 169650 96 chain 80962 chr7 159138663 + 92879819 92880798 L1PA7 6471 + 5272 6270 43209 342 0 3 60 0 12 301 7 10 119 0 1 150 chain 15784 chr7 159138663 + 92880799 92880993 L1PA7 6471 + 6279 6470 139004 185 3 0 6 chain 45127 chr7 159138663 + 92953426 92953931 L1PA3long 6157 - 1810 2334 62811 58 0 17 374 0 2 73 chain 167109 chr7 159138663 + 92953931 92955769 L1PA3long 6157 + 4321 6157 22384 253 2 0 406 4 0 324 0 4 849 chain 537745 chr7 159138663 + 92971283 92977292 L1PA3long 6157 + 6 6155 3195 146 0 1 110 1 2 5 1 0 416 0 3 24 7 0 56 7 135 142 1 0 804 0 4 611 1 0 408 0 3 766 0 2 710 0 4 1776 0 4 17 chain 11055 chr7 159138663 + 92998868 92998997 L1P1 4361 + 4200 4328 155987 105 1 0 23 chain 30816 chr7 159138663 + 93000000 93000333 L1PA3long 6157 + 5345 5678 82840 333 chain 42693 chr7 159138663 + 93000333 93000811 L1PA3long 6157 + 5679 6157 65783 478 chain 121326 chr7 159138663 + 93001023 93002605 THE1B-int 1605 - 0 1605 30588 65 10 8 1064 41 66 345 0 1 4 1 0 52 chain 19741 chr7 159138663 + 93009906 93010132 L1PA5 6144 - 1208 1434 127135 226 chain 107165 chr7 159138663 + 93010132 93011339 L1PA5 6144 + 4929 6144 34924 555 0 1 514 0 7 138 chain 239054 chr7 159138663 + 93024412 93027278 HERVH-int 3825 + 511 3822 16825 21 0 207 17 0 1 7 0 2 12 0 3 445 15 0 41 0 4 170 0 1 230 0 1 12 4 31 931 0 1 4 8 7 411 9 11 39 8 218 98 0 3 9 3 0 150 0 2 222 chain 31610 chr7 159138663 + 93028524 93028932 LTR7 482 + 0 477 81465 69 8 46 28 1 0 81 0 1 39 0 31 182 chain 9530 chr7 159138663 + 93043062 93043322 L1MB1 2102 - 54 298 162925 10 1 0 23 2 0 8 2 0 40 46 44 25 48 40 28 1 0 26 chain 8703 chr7 159138663 + 93048813 93048914 L1PA2 6032 - 0 99 167177 6 2 0 93 chain 25265 chr7 159138663 + 93100085 93100374 L1PA3long 6157 - 0 285 103395 7 4 0 278 chain 354289 chr7 159138663 + 93117153 93121606 L1PA8A 6298 + 1757 6229 11496 477 0 1 65 1 2 199 9 0 58 6 5 17 9 10 22 0 3 756 1 0 225 3 10 268 1 2 123 0 1 145 0 1 39 0 3 46 7 8 19 6 7 65 3 0 868 1 2 282 1 0 39 0 4 41 0 2 447 11 17 144 5 0 6 4 9 34 chain 4273 chr7 159138663 + 93135264 93135432 LTR9 672 + 414 573 203565 25 0 1 17 101 91 25 chain 25548 chr7 159138663 + 93157595 93157886 L1PA5 6144 - 4 295 101999 291 chain 12642 chr7 159138663 + 93165860 93166004 L1PA4 6152 - 1 146 149670 26 0 1 118 chain 27770 chr7 159138663 + 93196867 93197187 L1PA6 6164 - 2 333 93798 241 2 13 77 chain 4368 chr7 159138663 + 93211162 93211235 MER5A1 166 - 34 108 202353 34 12 13 27 chain 545617 chr7 159138663 + 93213392 93221079 L1PA2 6032 - 23 6029 1996 1140 1682 0 2227 0 1 2385 1 0 183 0 1 69 chain 146424 chr7 159138663 + 93214545 93216213 SVA_D 2077 - 0 1841 25102 338 0 10 251 0 115 276 0 51 82 1 38 33 40 0 647 chain 1284 chr7 159138663 + 93215530 93215558 SVA_D 2077 - 889 917 129351 28 chain 19810 chr7 159138663 + 93244888 93245268 L1PREC2 3366 - 2022 2377 127783 5 0 1 29 4 3 24 20 0 33 17 19 37 50 43 161 chain 38879 chr7 159138663 + 93256692 93257223 MLT2A2 560 + 0 560 70901 61 1 15 111 0 1 6 10 13 185 19 30 138 chain 18871 chr7 159138663 + 93264362 93264590 L1PA7 6471 - 3 229 130453 9 2 0 217 chain 19902 chr7 159138663 + 93266589 93266911 THE1C 375 - 42 375 127476 84 52 64 9 0 1 160 2 0 15 chain 2701 chr7 159138663 + 93269321 93269464 LTR7 482 + 164 289 230223 21 97 79 25 chain 287111 chr7 159138663 + 93269658 93273203 HERVH-int 3825 + 0 3825 14213 115 0 1 414 1 0 8 1 0 7 0 1 24 2 1 9 1 0 12 11 39 14 6 4 7 1 0 40 1 21 62 1 0 450 15 0 38 0 4 414 4 31 370 8 13 331 4 7 5 3 0 628 9 11 39 8 218 45 0 2 215 0 2 14 0 1 208 chain 38732 chr7 159138663 + 93281757 93282217 L1PA7 6471 - 9 469 71102 460 chain 512867 chr7 159138663 + 93287355 93293470 L1PA6 6164 - 2 6145 5894 847 1 0 949 0 4 666 1 0 506 0 1 4 1 2 133 1 2 441 8 17 340 0 9 292 7 9 686 1 0 344 0 4 387 11 10 106 26 34 238 20 13 99 chain 65551 chr7 159138663 + 93302331 93303101 L1P1 4361 - 40 1110 50314 173 1 0 459 0 301 137 chain 117215 chr7 159138663 + 93303103 93304490 L1PA5 6144 + 4747 6144 32049 65 3 4 129 0 8 857 0 1 333 chain 32752 chr7 159138663 + 93311177 93311548 L1PA4 6152 + 5781 6150 79611 117 1 0 36 1 0 216 chain 12656 chr7 159138663 + 93322598 93322877 MER50 708 - 448 708 149619 23 0 7 55 1 2 14 55 32 52 35 31 44 chain 93696 chr7 159138663 + 93335330 93336460 L1PA6 6164 - 6 1167 38441 616 0 26 200 0 4 213 5 6 96 chain 123203 chr7 159138663 + 93374094 93375495 L1PA4 6152 + 4750 6152 29977 111 0 1 443 0 1 343 0 1 492 2 0 10 chain 26204 chr7 159138663 + 93398002 93398759 L1MA1 4479 + 3761 4150 99182 58 24 21 19 1 0 88 1 0 5 8 5 49 356 0 72 1 0 29 2 0 35 1 0 8 chain 27700 chr7 159138663 + 93412374 93412683 AluYf4 310 - 0 309 94042 309 chain 566148 chr7 159138663 + 93416959 93422991 L1HS 6032 - 0 6032 142 6032 chain 160156 chr7 159138663 + 93436532 93438661 L1PB1 5432 + 3297 5384 23319 200 0 3 232 11 0 230 5 7 657 3 0 61 0 1 127 3 0 288 3 2 9 1 0 21 1 0 12 27 20 53 2 1 10 7 6 45 1 0 14 3 0 17 9 0 14 11 8 11 2 0 24 1 0 14 chain 81277 chr7 159138663 + 93499175 93500069 MER11D 897 - 0 897 43051 313 0 3 581 chain 22703 chr7 159138663 + 93500177 93500452 AluY 311 + 24 300 117057 108 0 1 167 chain 25376 chr7 159138663 + 93505823 93506124 AluYk4 311 - 14 310 102801 165 5 0 131 chain 3593 chr7 159138663 + 93531280 93531318 MLT2A2 560 - 0 38 213793 38 chain 6623 chr7 159138663 + 93592520 93592647 MSTA 426 + 259 405 180283 41 34 53 52 chain 3645 chr7 159138663 + 93610202 93610248 MER41G 495 - 109 154 212885 13 1 0 32 chain 19636 chr7 159138663 + 93640638 93641093 LTR12C 1709 - 253 936 128296 41 195 424 154 1 0 64 chain 144386 chr7 159138663 + 93648676 93650357 L1PA6 6164 + 4474 6161 25415 38 0 4 859 0 1 640 1 2 143 chain 22007 chr7 159138663 + 93651925 93652302 THE1C 375 + 0 375 120199 67 1 15 9 13 0 13 10 11 65 0 1 4 37 33 132 1 0 25 chain 72217 chr7 159138663 + 93655813 93656734 L1PA8 5853 - 0 925 47367 93 1 0 69 22 13 40 0 1 29 2 0 46 1 0 113 0 12 62 0 1 361 0 3 82 chain 15947 chr7 159138663 + 93665395 93665594 L1PA5 6144 + 5947 6144 138527 46 3 0 138 1 2 11 chain 3701 chr7 159138663 + 93667040 93667137 L1MD3 1191 - 71 169 211920 46 38 39 13 chain 32183 chr7 159138663 + 93684874 93685294 L1P2 5180 + 2044 2475 80555 67 0 3 60 5 14 19 0 2 174 1 0 76 2 0 16 chain 12575 chr7 159138663 + 93727274 93727599 L1PB1 5432 + 5135 5427 149937 9 1 0 14 18 12 50 18 16 37 48 35 19 8 5 13 4 2 23 1 0 21 1 0 13 1 0 12 2 0 7 1 0 4 chain 23758 chr7 159138663 + 93730682 93731539 LTR12C 1709 + 795 1541 111722 42 1 0 48 32 69 107 11 58 84 24 25 11 454 259 43 chain 2748 chr7 159138663 + 93731042 93731074 LTR12C 1709 + 1031 1063 186778 32 chain 8113 chr7 159138663 + 93731074 93731249 LTR12C 1709 + 703 877 143932 46 2 17 7 15 0 64 1 0 40 chain 217796 chr7 159138663 + 93787461 93789847 L1PA3long 6157 + 3773 6157 18015 566 1 0 972 1 0 846 chain 44310 chr7 159138663 + 93795190 93795703 MER9a1 513 + 0 513 63812 94 1 2 20 1 0 397 chain 3061 chr7 159138663 + 93803255 93803290 MER33 330 + 260 295 223792 35 chain 263042 chr7 159138663 + 93820487 93824263 L1PA5 6144 + 3101 6144 15536 75 1 0 314 1 0 195 0 1 300 1 0 1662 744 13 483 chain 29664 chr7 159138663 + 93833428 93833745 AluYb8 318 - 0 317 85985 317 chain 116192 chr7 159138663 + 93848387 93849668 L1PA3long 6157 + 4875 6157 32376 450 1 2 830 chain 80847 chr7 159138663 + 93850321 93851288 L1PA6 6164 + 5182 6156 43247 70 0 1 105 0 1 16 0 1 455 0 1 48 4 7 269 chain 2909 chr7 159138663 + 93875967 93876007 MER113A 284 + 137 175 226897 31 2 0 7 chain 20838 chr7 159138663 + 93882096 93882356 L1PA5 6144 - 9 267 124493 66 11 6 24 0 3 159 chain 41026 chr7 159138663 + 93897471 93898082 LTR8 732 - 0 669 67864 191 1 0 4 13 11 19 0 5 30 5 10 114 0 27 34 3 4 41 3 19 42 3 10 9 0 7 7 7 0 85 chain 42985 chr7 159138663 + 93898804 93899362 L1PA7 6471 + 5933 6470 65431 34 29 0 15 1 5 152 0 1 233 1 2 15 0 4 5 2 0 71 chain 22389 chr7 159138663 + 93900488 93900735 L1PA4 6152 + 5903 6151 118541 91 0 1 156 chain 26212 chr7 159138663 + 93948731 93949078 THE1A 353 - 0 346 99162 240 7 6 100 chain 26434 chr7 159138663 + 93950657 93951340 THE1A 353 - 0 353 98291 124 329 0 119 3 2 108 chain 46652 chr7 159138663 + 93956704 93957256 L1PA6 6164 + 5607 6160 61494 409 1 2 142 chain 32628 chr7 159138663 + 93957277 93957654 L1PA7 6471 + 6086 6464 79800 229 0 1 148 chain 3600 chr7 159138663 + 93970024 93970066 THE1C 375 + 2 44 213643 42 chain 12970 chr7 159138663 + 94001333 94001555 MER1B 344 + 59 344 148352 18 25 57 86 4 0 47 10 45 32 chain 11272 chr7 159138663 + 94002594 94002794 L1PB1 5432 - 28 207 155152 12 1 0 22 1 0 24 2 0 9 13 10 16 9 0 15 3 0 16 1 0 43 1 0 12 chain 3188 chr7 159138663 + 94076232 94076268 MADE1 96 + 57 93 221154 36 chain 45130 chr7 159138663 + 94083813 94084349 L1PA7 6471 - 1 539 62896 160 14 16 362 chain 24908 chr7 159138663 + 94088275 94088587 Tigger3b 1229 + 883 1204 105294 64 1 0 33 0 10 214 chain 47900 chr7 159138663 + 94108679 94109207 L1PA4 6152 - 1 529 60556 528 chain 32936 chr7 159138663 + 94117201 94119552 L1MA3 4352 - 501 2075 79311 64 2 1 10 0 7 6 25 5 23 7 8 43 1 0 118 1 0 122 1790 1025 49 0 4 21 3 4 28 3 1 35 chain 8359 chr7 159138663 + 94120410 94120526 L1PB1 5432 + 4705 4822 169078 99 1 2 16 chain 27062 chr7 159138663 + 94125397 94125721 L1PA7 6471 - 10 333 96074 151 1 0 172 chain 5576 chr7 159138663 + 94183043 94183102 L1PA5 6144 + 6067 6126 189314 59 chain 167165 chr7 159138663 + 94201872 94204951 L1PREC2 3366 - 117 2731 22377 8 13 0 3 1 0 9 4 0 9 10 5 17 106 75 15 3 0 5 116 59 25 0 1 8 20 18 21 22 8 11 3 0 16 0 1 13 2 0 15 50 43 11 7 3 40 7 4 54 2 0 41 2 0 211 0 1 16 1 0 168 8 7 11 3 2 11 1 2 391 6 7 36 0 1 82 6 5 397 0 1 59 5 4 13 319 0 384 21 22 110 7 10 6 0 1 118 chain 13960 chr7 159138663 + 94211734 94211942 L1PA11 4918 - 501 714 144708 10 2 0 13 2 1 56 0 6 7 2 0 10 0 4 106 chain 23233 chr7 159138663 + 94266107 94266386 AluSq2 311 + 14 299 114530 164 0 6 115 chain 122652 chr7 159138663 + 94334625 94336054 LTR12C 1709 + 0 1709 30178 262 0 1 32 0 1 354 0 278 184 1 0 8 2 0 104 0 4 21 1 0 460 chain 379387 chr7 159138663 + 94343181 94349021 L1PA8 5853 - 17 5596 10775 42 10 1 32 11 10 10 0 1 4 2 0 45 0 3 9 21 14 57 2 0 44 1 0 122 6 11 42 229 0 129 14 0 31 4 2 28 0 1 6 19 22 83 7 5 71 0 2 50 7 0 29 1 2 410 9 9 23 6 0 36 0 3 22 0 1 84 0 1 333 2 1 250 0 2 162 1 3 170 5 6 199 0 1 240 0 5 28 0 4 54 2 1 9 8 1 152 1 0 64 0 1 620 0 1 155 0 10 125 6 8 177 0 5 312 0 1 28 14 15 23 9 7 26 0 1 120 0 21 158 8 9 66 39 37 40 178 165 78 186 153 8 0 4 7 3 0 16 chain 10567 chr7 159138663 + 94351419 94351598 L1M1 2793 + 1158 1341 157967 19 10 9 24 0 4 55 25 26 46 chain 37072 chr7 159138663 + 94351624 94352100 MER9a3 513 - 20 498 73426 48 0 2 10 0 1 174 1 0 24 3 2 118 13 14 85 chain 395543 chr7 159138663 + 94352113 94356766 HERVK9-int 4720 - 0 4666 10254 63 2 5 36 0 4 175 0 1 420 1 2 48 1 3 1462 0 1 136 0 1 1332 1 0 456 0 4 229 3 4 175 2 1 29 1 0 9 1 0 66 1 0 4 chain 39408 chr7 159138663 + 94358112 94358608 MER9a3 513 - 0 498 70154 68 9 12 177 1 0 145 0 1 18 1 0 77 chain 188928 chr7 159138663 + 94361272 94364016 L1PA13 3608 + 775 3548 20154 33 1 2 296 2 1 5 0 1 8 0 2 29 9 12 227 5 51 71 7 11 410 2 1 26 6 10 7 0 4 160 0 1 6 16 5 175 1 0 338 8 9 160 3 0 133 6 14 88 0 3 55 8 6 24 1 0 114 2 0 59 6 5 15 4 5 32 17 14 23 2 1 17 2 0 4 2 0 20 1 0 24 3 0 9 12 7 10 1 0 6 7 1 9 5 2 12 chain 14753 chr7 159138663 + 94364322 94364504 L1PA13 3608 + 2039 2221 142089 182 chain 4439 chr7 159138663 + 94369730 94369777 U6 107 - 51 98 201458 47 chain 3819 chr7 159138663 + 94376058 94376137 MER89 557 + 0 69 210101 43 7 8 10 11 0 8 chain 431945 chr7 159138663 + 94380939 94386233 L1PA7 6471 - 14 5298 9272 5 1 0 142 1 2 261 0 1 122 2 1 302 1 0 326 0 6 189 1 0 575 1 3 153 5 6 169 0 1 358 12 0 278 0 7 21 0 1 299 6 5 4 0 1 115 0 1 16 11 4 58 0 2 383 13 0 379 1 0 1047 0 4 37 chain 189921 chr7 159138663 + 94386552 94389610 L1PBa 3878 + 48 2891 20059 12 3 0 3 1 0 16 142 86 48 163 15 9 2 0 250 8 9 28 2 1 238 32 35 27 2 0 5 6 12 138 8 11 50 10 19 99 34 11 21 2 0 6 0 1 94 1 2 245 0 5 70 43 39 178 1 3 15 8 11 75 40 0 94 0 13 40 0 1 327 1 0 120 5 1 169 0 4 87 0 5 36 3 18 41 chain 2731 chr7 159138663 + 94387856 94387888 L1PBa 3878 + 1119 1151 227010 32 chain 10133 chr7 159138663 + 94401461 94401635 L1PB1 5432 + 5159 5325 159931 9 2 0 52 2 1 16 2 1 42 1 0 14 6 3 28 chain 43319 chr7 159138663 + 94406515 94407093 LTR12 884 + 48 873 65011 29 14 16 247 1 2 36 2 0 54 4 14 98 0 236 93 chain 46705 chr7 159138663 + 94409596 94410113 L1PA4 6152 - 1 518 61451 517 chain 244699 chr7 159138663 + 94413285 94416564 L1PA7 6471 + 3489 6466 16518 8 2 0 32 6 5 302 1 0 166 0 1 665 0 4 499 0 4 446 316 3 59 15 17 201 17 23 381 21 22 132 3 0 7 chain 167121 chr7 159138663 + 94418459 94420973 L1PA14 3548 - 63 2705 22383 20 1 0 10 6 0 40 1 0 13 5 4 5 1 0 11 18 16 23 5 1 10 2 1 36 6 210 80 8 4 42 20 42 60 4 5 41 17 18 29 3 1 75 1 0 151 3 2 185 0 15 18 0 3 255 7 0 82 5 6 65 16 17 393 0 1 9 11 16 19 3 1 7 0 5 103 1 2 5 0 4 236 110 0 197 0 8 40 chain 480044 chr7 159138663 + 94423846 94429833 L1PA6 6164 + 160 6162 7728 291 41 22 96 1 0 228 0 17 914 1 0 82 1 2 401 1 3 114 2 0 62 4 5 562 0 2 87 1 2 139 0 1 36 1 2 72 0 1 702 1 0 195 2 1 204 0 2 439 9 11 343 7 5 5 0 2 108 0 4 48 1 4 69 1 2 569 8 9 139 chain 82828 chr7 159138663 + 94436230 94437272 MER11C 1089 - 26 1089 42407 143 1 0 54 0 1 127 0 1 11 0 3 24 1 0 4 1 5 328 1 0 41 0 4 62 0 9 150 0 2 94 chain 418325 chr7 159138663 + 94445130 94450786 L1PA7 6471 - 1 6468 9578 330 1 2 434 1 4 79 1 0 526 20 0 110 0 1 35 1 0 240 0 6 6 12 6 67 1 0 576 2 1 254 0 1 34 7 6 170 0 2 46 1 0 37 1 0 397 12 16 120 487 0 65 6 10 254 10 0 330 0 7 893 0 1312 90 chain 4231 chr7 159138663 + 94453166 94453215 MER34C 514 - 52 101 204162 49 chain 206067 chr7 159138663 + 94496243 94500000 L1PB1 5432 - 9 3112 18786 19 1 0 13 1 0 21 1 0 13 7 0 6 0 5 14 1 0 5 3 1 15 27 15 16 6 5 34 5 4 16 2 1 52 2 0 9 2 0 3 2 0 8 672 45 82 6 0 7 0 6 194 9 11 6 1 0 26 5 10 56 18 20 50 16 6 211 3 5 186 2 3 262 0 1 46 2 0 171 33 32 67 23 6 17 0 1 24 15 14 134 0 1 96 0 12 143 1 3 187 1 0 165 1 0 8 6 9 236 0 4 57 1 2 26 1 0 66 14 14 100 chain 156084 chr7 159138663 + 94500367 94502593 L1PBa 3878 - 1354 3511 23847 198 14 10 57 8 13 80 0 1 137 74 0 78 7 11 74 0 6 236 8 1 8 4 0 94 1 0 4 0 1 49 2 1 33 0 1 308 0 1 48 0 2 5 0 7 230 5 4 55 8 9 113 7 3 17 0 1 4 1 0 100 1 0 109 14 13 35 chain 33108 chr7 159138663 + 94507036 94507538 LTR10F 562 + 0 562 79040 134 38 5 89 0 3 14 0 20 12 5 76 40 0 1 30 6 5 69 3 2 62 chain 75955 chr7 159138663 + 94509587 94510554 HERVIP10FH-int 2884 + 149 1126 45508 64 3 0 186 11 9 112 0 5 66 0 2 91 0 5 81 0 1 279 0 1 40 7 8 27 chain 14353 chr7 159138663 + 94512217 94512392 LTR10F 562 + 0 231 143370 148 1 57 26 chain 12306 chr7 159138663 + 94525399 94525552 THE1B 368 - 196 364 150988 113 0 15 40 chain 3225 chr7 159138663 + 94526117 94526154 MER74A 558 + 521 558 220513 37 chain 5568 chr7 159138663 + 94544704 94544780 MER5A1 166 - 1 76 189399 40 1 0 35 chain 24130 chr7 159138663 + 94560894 94561188 AluSp 311 - 16 310 109586 294 chain 3938 chr7 159138663 + 94573476 94573531 L1MA4 2864 - 55 108 208293 43 2 0 10 chain 181569 chr7 159138663 + 94581280 94583409 L1PA7 6471 - 10 2138 20839 151 0 4 332 2 0 264 0 1 86 3 0 523 1 0 731 0 1 5 2 1 29 chain 464546 chr7 159138663 + 94593655 94599940 L1PA7 6471 - 6 6471 8236 7 3 0 40 1 5 276 0 1 157 0 10 260 0 8 78 3 0 462 0 2 59 1 0 151 1 0 200 0 1 127 2 1 63 0 1 15 9 0 53 0 1 14 0 11 181 5 7 477 0 1 89 1 0 71 2 0 17 36 37 29 0 4 52 3 0 221 2 1 115 93 0 450 288 6 182 1 3 62 0 552 496 3 0 94 11 14 648 1 0 190 0 1 56 1 2 217 41 19 168 chain 26412 chr7 159138663 + 94597492 94597769 AluYa5 310 - 19 296 98366 277 chain 16628 chr7 159138663 + 94609402 94609622 MER30 238 - 2 238 136588 78 0 6 33 6 15 17 0 1 86 chain 334296 chr7 159138663 + 94611141 94615053 L1PA6 6164 - 2 3915 12044 145 0 7 7 8 1 849 0 8 71 1 0 167 1 0 3 10 0 2115 0 3 38 0 7 408 5 0 84 chain 4646 chr7 159138663 + 94636573 94636644 MER20 218 - 21 93 199102 12 6 7 53 chain 44383 chr7 159138663 + 94638109 94638611 L1PA5 6144 + 5630 6132 63711 502 chain 2670 chr7 159138663 + 94644696 94644752 L1MEf 1413 - 410 466 230771 13 7 9 4 1 0 5 1 0 25 chain 517730 chr7 159138663 + 94649785 94656855 L1PA7 6471 - 11 6471 5398 140 6 0 6 6 0 16 4 21 144 23 5 426 0 2 37 0 4 35 3 0 146 0 2 528 1 0 95 1 0 27 0 1 200 1 0 71 1 2 12 8 1 536 0 1 56 1 4 5 3 0 389 0 4 47 1 0 79 324 13 161 4 8 136 0 4 84 1 4 55 1 2 775 295 0 323 0 1 4 1 0 145 1 0 131 1 0 178 0 2 428 6 1 557 1 2 404 chain 17061 chr7 159138663 + 94672735 94673045 MER83B 357 + 0 314 135431 34 0 1 9 1 18 62 48 30 57 1 0 21 7 13 65 1 0 4 chain 6210 chr7 159138663 + 94697278 94697359 LTR7Y 441 + 211 395 183496 10 0 103 71 chain 14070 chr7 159138663 + 94698285 94698461 MER2 342 - 83 259 144318 176 chain 23563 chr7 159138663 + 94704870 94705157 AluY 311 + 10 291 112774 14 5 0 109 1 0 158 chain 127097 chr7 159138663 + 94707303 94708704 L1PA3long 6157 - 10 1410 28792 7 1 0 614 0 1 289 1 0 489 chain 119003 chr7 159138663 + 94708704 94710002 L1PA3long 6157 + 3447 4746 31341 516 0 2 278 1 0 503 chain 9141 chr7 159138663 + 94710002 94710129 MER34C_ 573 - 424 567 164855 55 1 15 29 0 2 42 chain 35155 chr7 159138663 + 94763330 94763776 L1PA8 5853 + 5395 5834 75981 126 1 0 43 1 0 46 2 0 68 2 1 11 1 0 50 2 1 93 chain 27870 chr7 159138663 + 94766412 94766728 L1PA5 6144 - 14 330 93456 316 chain 194735 chr7 159138663 + 94774978 94777281 L1PA7 6471 - 165 2474 19599 329 0 1 355 1 0 18 0 4 649 0 1 41 0 1 910 chain 380976 chr7 159138663 + 94805443 94811470 L1PB1 5432 + 78 5420 10725 199 5 6 123 14 0 76 0 3 38 45 41 135 0 4 370 0 1 4 1 0 299 0 5 2 5 0 11 1 0 4 9 5 51 2 0 146 7 12 38 0 3 15 9 13 22 2 0 79 9 0 206 12 13 516 0 5 314 6 5 80 0 3 93 4 5 450 4 8 38 1 0 60 1 0 4 0 1 152 3 0 59 0 1 159 1 0 38 5 7 250 3 0 85 13 18 56 8 4 216 0 3 27 15 14 30 0 2 83 1 0 24 14 13 168 767 112 12 3 0 18 1 0 11 1 0 12 15 9 35 7 6 12 2 1 16 1 0 44 1 0 23 11 5 18 3 1 4 1 0 14 1 0 24 1 0 7 0 3 11 1 0 13 1 0 16 chain 28804 chr7 159138663 + 94818745 94819047 AluYa5 310 - 8 310 89876 302 chain 46903 chr7 159138663 + 94839929 94840468 L1PA7 6471 + 5930 6469 61306 539 chain 407777 chr7 159138663 + 94844281 94848914 L1PA5 6144 - 2 4636 9856 14 6 0 143 0 1 99 12 11 963 0 7 491 1 0 738 2 0 698 0 3 1466 chain 109328 chr7 159138663 + 94861572 94862835 L1PA7 6471 + 5198 6467 34360 423 0 3 718 0 3 122 chain 48089 chr7 159138663 + 94862861 94863497 L1PB1 5432 + 2837 3468 60410 5 3 0 362 3 2 36 1 0 226 chain 57850 chr7 159138663 + 94863497 94864236 L1PB1 5432 + 3472 4224 54064 258 1 2 218 12 17 105 1 8 144 chain 80426 chr7 159138663 + 94864242 94865441 L1PB1 5432 + 4231 5422 43416 395 2 0 33 4 0 190 1 0 100 1 28 126 13 11 23 1 0 7 1 0 14 5 1 9 2 0 52 2 1 16 1 0 32 11 12 15 29 20 10 3 1 5 1 0 14 2 0 24 1 0 17 7 6 11 1 0 18 chain 86300 chr7 159138663 + 94886832 94887789 L1PA4 6152 - 0 960 41042 13 1 4 943 chain 34278 chr7 159138663 + 94928739 94929175 MLT2A1 477 + 0 477 77242 66 0 2 101 0 4 75 0 1 76 1 0 60 5 40 52 chain 20242 chr7 159138663 + 94967190 94967518 THE1D 372 - 40 372 126408 90 1 7 40 19 17 6 0 6 88 11 12 13 9 0 38 0 2 13 chain 23370 chr7 159138663 + 94973131 94973416 L1PA7 6471 + 6182 6465 113815 135 3 4 138 3 0 6 chain 14342 chr7 159138663 + 94988356 94988622 MER2 342 - 47 319 143409 68 21 26 27 24 24 31 1 3 36 4 1 8 0 2 46 chain 188812 chr7 159138663 + 95006091 95008536 L1P2 5180 + 2 2464 20164 143 9 13 8 5 0 28 1 0 50 11 10 192 19 0 67 5 2 48 1 0 220 0 15 194 3 21 67 1 4 165 7 8 176 7 11 489 0 1 273 0 2 103 11 7 115 0 3 27 chain 534364 chr7 159138663 + 95008539 95014670 L1PA5 6144 + 3 6139 3670 869 0 1 1785 0 1 915 5 6 1716 0 5 166 0 1 20 0 1 67 0 1 33 6 0 549 chain 302265 chr7 159138663 + 95014689 95018409 L1PA6 6164 + 2458 6162 13308 329 0 3 108 0 1 170 72 6 98 6 7 444 0 1 123 4 0 617 0 4 7 0 1 356 2 1 370 0 43 247 0 2 751 1 0 15 chain 4025 chr7 159138663 + 95015296 95015344 L1PA6 6164 - 3990 4038 206994 48 chain 12192 chr7 159138663 + 95032782 95032995 L1PA16 3655 - 36 230 151451 16 5 0 7 37 18 22 0 2 89 0 3 37 chain 28014 chr7 159138663 + 95053023 95053394 THE1C 375 - 3 373 92952 22 1 0 174 0 1 55 17 16 102 chain 39843 chr7 159138663 + 95058347 95058790 L1PA5 6144 - 0 443 69545 443 chain 24116 chr7 159138663 + 95071954 95072247 AluSp 311 - 8 301 109656 293 chain 3669 chr7 159138663 + 95073823 95073868 MADE1 96 - 50 95 212421 45 chain 117274 chr7 159138663 + 95089496 95091004 THE1C-int 1605 + 0 1599 32032 14 2 1 280 0 3 29 0 6 112 0 7 300 6 0 80 0 2 5 4 84 83 2 1 249 0 1 234 5 4 36 0 1 67 chain 4001 chr7 159138663 + 95101654 95101734 MER45A 178 + 91 168 207380 32 18 15 30 chain 99711 chr7 159138663 + 95181075 95182341 LTR12C 1709 - 0 1709 36854 74 1 0 8 1 0 151 2 5 163 4 6 57 0 1 16 0 4 100 14 449 201 9 12 158 1 0 7 0 2 6 4 0 289 chain 125493 chr7 159138663 + 95195370 95196766 L1PA3long 6157 - 2 1391 29219 781 8 0 521 0 1 86 chain 137685 chr7 159138663 + 95196766 95198294 L1PA3long 6157 + 3245 4777 26527 47 0 1 221 0 1 74 0 1 865 0 1 321 chain 19585 chr7 159138663 + 95233979 95234541 L1PA6 6164 - 2 565 43584 11 1 0 444 0 2 106 chain 89811 chr7 159138663 + 95234620 95235870 LTR12C 1709 + 84 1709 39720 274 12 155 297 0 200 58 5 52 95 22 15 70 5 22 139 26 3 77 1 0 86 6 5 77 chain 14114 chr7 159138663 + 95235870 95236275 L1PA6 6164 - 565 969 43584 284 1 0 120 chain 4346 chr7 159138663 + 95236275 95236327 L1P2 5180 + 1284 1338 198753 40 0 2 12 chain 231842 chr7 159138663 + 95243234 95247021 L1PA13 3608 + 147 3548 17210 16 1 0 14 3 0 24 53 33 54 1 0 4 1 0 8 1 2 102 46 42 16 6 2 36 3 1 15 2 0 16 1 0 99 2 0 271 10 11 5 2 0 277 0 2 316 0 4 386 31 33 11 0 6 8 8 7 41 2 0 5 0 2 106 0 3 54 1 2 64 30 8 42 2 1 202 0 2 125 320 1 411 1 0 95 1 0 6 1 4 18 1 0 114 3 1 58 24 24 39 2 0 48 4 0 24 1 0 10 59 47 9 1 0 14 chain 23727 chr7 159138663 + 95288333 95288622 L1PA6 6164 - 4 292 111898 178 1 0 110 chain 28804 chr7 159138663 + 95293272 95293574 AluYa5 310 - 8 310 89875 302 chain 112459 chr7 159138663 + 95295209 95296571 L1PA7 6471 + 5095 6461 33549 6 1 0 519 2 1 37 0 2 133 0 2 512 0 1 100 0 1 52 chain 46408 chr7 159138663 + 95335643 95336240 LTR12F 595 + 0 595 61680 102 1 2 41 2 0 32 6 14 19 14 5 380 chain 11050 chr7 159138663 + 95353844 95354056 Tigger3a 397 + 158 373 156016 135 54 60 7 3 0 13 chain 29759 chr7 159138663 + 95361664 95361976 AluYb8 318 - 6 318 85611 312 chain 11101 chr7 159138663 + 95365250 95365389 L1MA3 4352 - 507 646 155797 139 chain 3088 chr7 159138663 + 95385942 95385979 MIRc 230 + 83 119 223129 29 1 0 7 chain 28137 chr7 159138663 + 95386268 95386580 AluYa5 310 - 0 310 92516 183 0 1 33 3 0 93 chain 3716 chr7 159138663 + 95394157 95394228 MER2 342 - 127 203 211686 5 0 1 5 1 0 18 2 0 6 5 12 29 chain 8116 chr7 159138663 + 95421910 95422010 MER34 540 + 370 470 170407 100 chain 11337 chr7 159138663 + 95425640 95425778 AluSp 311 - 31 168 154927 103 1 0 34 chain 545321 chr7 159138663 + 95461282 95467304 L1PA3long 6157 - 0 6156 2032 4305 0 5 943 9 137 614 0 1 151 chain 37742 chr7 159138663 + 95471491 95471989 LTR6B 557 - 10 557 72496 13 0 1 10 0 1 21 0 1 6 0 1 96 0 2 35 0 1 272 0 15 15 8 35 22 chain 98147 chr7 159138663 + 95523892 95525164 HSMAR1 1287 - 1 1287 37239 20 9 17 221 0 6 84 15 8 307 8 9 91 0 1 165 0 1 231 0 4 121 chain 278070 chr7 159138663 + 95568190 95571258 L1PA3long 6157 - 3083 6150 14739 1811 1 0 185 0 1 596 1 0 474 chain 279908 chr7 159138663 + 95571258 95574345 L1PA3long 6157 + 3068 6157 14646 2416 0 1 338 0 1 333 chain 41265 chr7 159138663 + 95585697 95586174 L1PA7 6471 - 1 479 67578 156 0 1 321 chain 6260 chr7 159138663 + 95587325 95587477 MER20 218 - 29 180 183086 12 19 20 66 12 14 11 5 6 8 5 0 14 chain 102912 chr7 159138663 + 95683290 95684527 L1PA7 6471 - 1 1249 36022 18 0 6 43 16 0 406 0 1 223 7 22 49 0 2 83 0 3 392 chain 14908 chr7 159138663 + 95684527 95684729 L1PA7 6471 + 6266 6468 141610 47 13 13 142 chain 10128 chr7 159138663 + 95757930 95758064 L1PA8 5853 + 5717 5849 159957 23 2 1 19 1 0 89 chain 29589 chr7 159138663 + 95769259 95769569 AluYa5 310 - 0 310 86237 310 chain 6542 chr7 159138663 + 95858548 95858675 LTR12C 1709 + 751 837 180908 51 41 0 35 chain 23636 chr7 159138663 + 95871861 95872283 MER4E 760 + 330 748 112384 17 97 97 35 1 0 50 5 0 209 0 2 8 chain 363761 chr7 159138663 + 95885129 95889528 L1PA7 6471 + 2047 6467 11268 421 1 7 106 0 2 512 0 4 248 0 1 4 1 0 25 0 3 104 1 2 4 1 0 7 2 0 659 6 4 153 2 1 183 0 1 170 0 4 645 0 2 67 0 1 228 1 4 29 0 1 36 3 4 96 8 9 248 0 2 417 5 0 6 chain 88432 chr7 159138663 + 95903523 95904510 L1PA4 6152 - 703 1695 40209 884 0 5 103 chain 61296 chr7 159138663 + 95904510 95905200 L1PA4 6152 + 5454 6143 52210 438 1 0 251 chain 17610 chr7 159138663 + 95908645 95909002 THE1B 368 - 0 368 133967 56 7 6 38 0 1 25 1 0 12 1 0 11 1 0 5 0 4 9 0 3 29 1 0 46 84 92 31 chain 539280 chr7 159138663 + 95917605 95923748 L1PA5 6144 + 3 6140 2933 460 0 1 55 1 9 148 0 3 348 1 0 208 1 0 207 1 0 267 1 0 83 20 6 507 4 1 717 0 1 182 0 1 433 1 0 555 0 1 687 0 1 1256 chain 5195 chr7 159138663 + 95935393 95935472 MIRb 242 - 110 188 193081 54 0 1 8 5 3 12 chain 20975 chr7 159138663 + 95942636 95942976 L1PA16 3655 + 3301 3619 124014 26 0 1 4 2 1 66 11 12 166 3 0 13 21 6 7 5 0 16 chain 27349 chr7 159138663 + 95956062 95956438 THE1C 375 - 1 368 95118 24 1 0 119 4 7 37 0 2 55 10 0 10 3 0 113 chain 6417 chr7 159138663 + 95959949 95960025 U6 107 + 0 76 181888 76 chain 7571 chr7 159138663 + 95970466 95970558 U6 107 + 15 107 173716 92 chain 20878 chr7 159138663 + 95977899 95978306 MSTA 426 + 7 426 124367 109 116 114 21 0 2 20 0 3 24 0 5 7 3 7 107 chain 4212 chr7 159138663 + 95984628 95984683 LTR39 781 - 511 567 204398 33 0 1 22 chain 17887 chr7 159138663 + 95986737 95987023 LTR23 429 + 0 276 133146 99 17 16 84 19 10 67 chain 33485 chr7 159138663 + 95995079 95995453 L1PA6 6164 - 3 378 78433 40 0 1 334 chain 3239 chr7 159138663 + 96007169 96007207 U7 62 + 1 39 220234 38 chain 3290 chr7 159138663 + 96007727 96007767 L1MC4 1079 - 198 238 219169 40 chain 5792 chr7 159138663 + 96041111 96041181 MER41B 635 + 481 551 187244 70 chain 29668 chr7 159138663 + 96067521 96067832 AluYb8 318 + 0 311 85960 311 chain 235360 chr7 159138663 + 96083848 96086733 HERVL-int 5654 + 2762 5654 17003 683 3 0 5 18 21 622 1 2 559 2 3 165 2 0 120 5 6 99 6 10 145 0 1 231 0 1 219 chain 31635 chr7 159138663 + 96086733 96087137 MLT2A1 477 + 0 402 81426 141 6 0 28 1 5 228 chain 77284 chr7 159138663 + 96099953 96101014 L1PBa 3878 - 101 1147 44839 7 1 0 9 19 13 11 2 0 18 22 16 481 3 0 174 9 8 88 1 2 4 1 0 187 1 5 23 chain 3763 chr7 159138663 + 96116717 96116765 MER96B 391 - 266 316 210911 9 0 2 39 chain 10970 chr7 159138663 + 96131227 96131364 L1PA16 3655 - 91 228 156321 137 chain 12384 chr7 159138663 + 96134884 96135205 MLT1A0 366 - 4 366 150697 100 74 116 18 60 59 69 chain 70102 chr7 159138663 + 96144518 96145347 L1PA6 6164 + 5335 6161 48351 821 3 0 5 chain 14140 chr7 159138663 + 96155041 96155274 MER1B 344 + 96 339 144073 34 14 15 71 4 0 49 18 31 43 chain 5300 chr7 159138663 + 96177739 96177803 MER5A1 166 + 67 131 192023 64 chain 547898 chr7 159138663 + 96181507 96187526 L1PA2 6032 - 5 6032 1720 145 0 1 398 4 0 358 0 1 1780 1 0 300 0 1 28 0 5 87 0 1 59 0 1 2606 1 0 24 0 4 228 chain 393146 chr7 159138663 + 96199515 96205046 L1PA7 6471 - 5 5777 10348 8 0 2 324 0 1 107 11 4 310 6 0 88 1 4 187 0 1 304 82 993 253 8 18 289 0 3 198 5 4 226 0 1 509 5 1 110 0 2 145 3 22 215 0 1 163 0 3 58 0 9 98 707 0 1111 chain 59993 chr7 159138663 + 96203254 96203935 L1PA5 6144 - 5 686 52832 681 chain 538064 chr7 159138663 + 96209284 96215284 L1PA3long 6157 - 1 6137 3143 855 4 5 282 1 0 1963 0 1 786 0 2 149 0 3 1133 1 0 71 1 129 62 0 7 2 7 0 14 0 1 30 0 1 507 0 1 132 chain 23811 chr7 159138663 + 96239416 96239708 AluSp 311 - 15 309 111408 19 0 2 273 chain 5535 chr7 159138663 + 96242400 96242550 LTR37A 408 + 6 163 189716 25 66 70 47 0 3 12 chain 96350 chr7 159138663 + 96260891 96262030 L1PA7 6471 + 5335 6468 37718 286 1 0 17 0 1 497 0 1 324 7 0 7 chain 11488 chr7 159138663 + 96272661 96272801 L1PA7 6471 - 1 139 154342 5 2 0 133 chain 28875 chr7 159138663 + 96272801 96273148 L1PA7 6471 + 5994 6341 89560 314 7 0 7 0 7 19 chain 52421 chr7 159138663 + 96291322 96291997 L1PA8 5853 + 5182 5853 57339 333 0 3 46 1 0 45 2 0 67 4 3 9 1 0 56 1 0 16 1 0 93 chain 68794 chr7 159138663 + 96312520 96313346 L1PA7 6471 + 5635 6468 48899 67 2 1 287 0 3 143 0 1 146 0 3 91 0 1 90 chain 106184 chr7 159138663 + 96315929 96317101 L1PA3long 6157 + 4975 6153 35217 337 0 3 443 0 3 392 chain 48577 chr7 159138663 + 96327572 96328236 L1PA8 5853 - 0 656 60053 93 1 0 16 10 9 42 0 1 13 1 0 27 4 1 43 2 0 44 1 0 218 0 1 31 1 0 117 chain 25322 chr7 159138663 + 96335602 96335904 AluSp 311 + 10 307 103111 275 5 0 22 chain 28432 chr7 159138663 + 96352012 96352346 L1PA7 6471 - 409 741 91455 5 2 0 327 chain 33296 chr7 159138663 + 96352365 96352761 L1PA7 6471 + 6080 6470 78733 378 0 1 4 7 0 7 chain 10955 chr7 159138663 + 96398947 96399106 MLT2B3 573 + 421 573 156379 95 17 10 47 chain 14828 chr7 159138663 + 96436387 96436706 THE1C 375 - 40 359 141851 100 42 49 54 0 3 13 65 46 17 0 9 28 chain 251310 chr7 159138663 + 96441246 96444353 L1PA8 5853 + 2743 5841 16154 132 0 1 132 0 1 90 0 4 118 2 0 116 0 1 718 0 4 259 0 1 394 19 19 222 24 0 52 0 2 555 1 0 45 2 0 62 9 8 15 0 9 37 2 1 19 2 1 80 chain 12151 chr7 159138663 + 96450567 96450703 L1PA8 5853 + 5421 5557 151606 136 chain 3918 chr7 159138663 + 96450709 96450755 L1PA8 5853 + 5562 5608 208569 46 chain 8129 chr7 159138663 + 96450757 96450888 L1PA8 5853 + 5608 5739 170337 70 2 1 14 14 15 31 chain 7068 chr7 159138663 + 96450977 96451057 L1PA8 5853 + 5769 5849 176958 80 chain 46765 chr7 159138663 + 96464045 96464883 L1PB1 5432 - 9 750 61402 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 11 6 18 7 0 11 6 0 12 7 6 43 1 0 15 2 1 52 2 0 9 5 1 16 1 0 4 1 0 18 1 0 3 55 0 15 11 0 32 1 18 15 14 1 9 0 2 221 1 0 122 chain 567960 chr7 159138663 + 96475962 96481992 L1HS 6032 - 0 6031 27 5959 0 1 71 chain 3885 chr7 159138663 + 96486774 96486824 Charlie1a 1436 + 1328 1378 209107 50 chain 29541 chr7 159138663 + 96522761 96523071 AluYa5 310 - 0 310 86454 310 chain 14678 chr7 159138663 + 96559758 96559984 L1PA11 4918 + 4269 4485 142337 59 5 0 60 22 19 67 2 0 11 chain 30713 chr7 159138663 + 96664130 96665162 LTR12C 1709 + 773 1515 83014 64 6 5 229 0 47 85 543 238 22 54 24 7 1 0 21 chain 3099 chr7 159138663 + 96664551 96664641 LTR12C 1709 + 714 767 222928 12 43 6 35 chain 3085 chr7 159138663 + 96664756 96664791 LTR12C 1709 + 683 718 223190 35 chain 5859 chr7 159138663 + 96676567 96676633 MSTC 436 + 370 436 186596 66 chain 503172 chr7 159138663 + 96679927 96686558 L1PA7 6471 + 3 6452 6661 407 4 6 262 42 40 214 0 24 34 2 1 310 0 6 452 0 1 63 0 1 159 1 2 276 1 0 237 0 2 63 0 1 7 0 2 59 5 0 334 0 6 121 0 3 120 315 98 180 6 5 314 0 4 185 0 1 155 4 2 280 19 15 119 1 0 4 0 1 755 5 6 157 4 1 4 0 1 121 0 1 77 2 1 90 1 0 474 11 10 175 chain 297576 chr7 159138663 + 96688210 96691933 L1PA6 6164 + 2403 6157 13548 20 7 12 358 0 4 397 1 0 27 32 30 148 0 1 65 0 1 471 3 4 324 1 0 7 0 1 808 0 2 170 1 0 59 0 4 539 1 0 6 0 18 278 chain 44835 chr7 159138663 + 96691943 96692555 L1PA8A 6298 + 5665 6291 63249 270 1 2 86 0 5 117 61 69 77 chain 360552 chr7 159138663 + 96698611 96703719 L1PB1 5432 - 8 4881 11348 4 1 0 16 1 0 9 5 4 21 1 0 24 2 0 14 8 5 18 25 13 15 1 0 44 1 0 16 2 1 53 27 20 13 1 0 20 1 0 7 1 4 74 1 2 229 2 1 88 0 1 19 2 0 6 0 2 58 0 2 115 1 2 124 1 0 642 0 2 4 1 0 381 0 105 54 5 16 334 1 0 7 5 0 69 0 3 62 0 1 113 0 5 84 2 1 253 309 0 499 11 12 171 0 7 137 0 8 13 39 3 691 0 2 150 chain 65089 chr7 159138663 + 96703719 96704509 LTR17 781 + 0 781 50535 299 10 0 27 1 2 453 chain 17855 chr7 159138663 + 96714300 96714668 THE1D 372 - 1 372 133224 144 98 99 44 12 0 8 6 20 56 chain 6266 chr7 159138663 + 96714720 96714847 MER45B 1037 - 144 273 183037 5 0 1 42 37 38 43 chain 184495 chr7 159138663 + 96728178 96731319 L1PB1 5432 + 1661 4181 20545 157 3 0 6 0 3 280 389 69 25 0 1 110 5 4 106 0 9 69 1 0 333 1 0 26 318 0 147 1 2 57 1 0 120 9 11 534 2 3 94 0 4 192 0 3 155 chain 29446 chr7 159138663 + 96728689 96728999 AluYb8 318 + 0 310 86867 310 chain 279412 chr7 159138663 + 96752309 96755944 L1PA8 5853 - 6 5803 14666 87 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 474 0 3 30 7 0 42 0 1 324 9 14 231 1 0 111 2 0 427 0 6 140 0 756 8 0 1 49 9 13 34 0 2 10 1 0 23 0 4 232 2 1397 265 0 1 255 0 28 16 0 1 41 0 4 18 1 5 263 42 30 197 32 12 14 1 0 10 2 0 22 chain 91199 chr7 159138663 + 96769799 96770882 MER11B 1079 + 0 1079 39235 200 0 1 27 0 5 26 3 0 513 6 0 292 5 4 11 chain 126475 chr7 159138663 + 96772649 96774515 L1PB1 5432 - 22 1851 28952 6 1 0 12 2 1 21 1 0 24 2 0 14 8 5 19 19 8 4 1 0 16 1 0 13 1 0 30 1 0 18 1 0 49 3 1 11 16 11 13 1 0 19 40 14 114 9 2 187 2 1 135 15 17 24 3 0 85 1 0 15 0 5 9 12 25 71 0 5 239 0 1 86 10 15 12 0 2 37 0 1 189 0 4 86 5 0 153 chain 31246 chr7 159138663 + 96783247 96783691 LTR7B 505 - 11 505 82088 40 14 13 79 1 0 82 0 2 26 5 3 8 0 26 18 6 13 69 0 10 66 0 9 30 chain 18475 chr7 159138663 + 96786139 96786377 L1PA6 6164 - 4 258 131572 16 1 0 151 1 18 69 chain 61348 chr7 159138663 + 96786701 96787441 L1PA4 6152 + 5413 6140 52173 409 0 3 230 28 6 55 4 10 14 chain 49734 chr7 159138663 + 96789347 96789916 SVA_A 1864 + 913 1551 59206 148 2 0 37 2 73 380 chain 71251 chr7 159138663 + 96790756 96791637 L1PA7 6471 - 10 897 47742 146 9 7 201 1 2 63 0 1 346 0 4 51 2 1 22 0 3 40 chain 102219 chr7 159138663 + 96791637 96793260 L1P2 5180 - 1969 3322 36211 28 8 7 97 22 14 564 5 4 15 0 15 22 0 4 77 279 0 348 6 5 86 0 1 66 chain 28201 chr7 159138663 + 96813213 96813513 AluYa5 310 - 10 310 92307 300 chain 66370 chr7 159138663 + 96814056 96815059 L1MA3 4352 - 384 1405 49921 92 1 7 83 4 8 28 0 3 8 22 19 295 1 2 44 1 0 89 0 2 12 0 4 94 63 66 111 1 0 54 chain 9894 chr7 159138663 + 96816081 96816192 L1PA5 6144 + 6033 6144 161099 111 chain 68101 chr7 159138663 + 96823690 96824548 L1PA7 6471 + 825 1697 49201 136 1 0 6 0 1 64 0 9 194 0 4 7 2 0 387 0 2 49 0 1 12 chain 41604 chr7 159138663 + 96824548 96825024 L1PA7 6471 + 5002 5478 66809 476 chain 8675 chr7 159138663 + 96825049 96825159 L1PA7 6471 + 5503 5614 167330 62 0 1 48 chain 5635 chr7 159138663 + 96825159 96825237 L1PA7 6471 + 5617 5694 188708 22 2 1 54 chain 24165 chr7 159138663 + 96825238 96825548 L1PA7 6471 + 5699 6010 109400 46 1 0 153 17 19 93 chain 34919 chr7 159138663 + 96825548 96825988 L1PA7 6471 + 6012 6451 76312 290 11 10 139 chain 510873 chr7 159138663 + 96839373 96845477 L1PA6 6164 - 3 6164 6080 7 2 0 143 0 1 6 2 0 684 0 3 47 0 1 821 0 1 81 0 4 456 0 2 144 0 5 55 6 10 466 2 1 28 1 0 5 5 6 143 1 6 709 0 1 255 0 1 740 5 14 222 0 3 180 0 4 30 15 26 283 1 0 48 0 2 55 4 8 216 4 6 232 chain 78350 chr7 159138663 + 96863162 96864242 MER11A 1151 + 1 1151 44353 54 0 99 73 0 4 63 4 0 73 1 0 31 0 4 41 0 1 94 0 1 31 2 0 114 5 6 120 0 26 26 43 0 22 18 0 36 0 1 46 0 1 183 chain 361444 chr7 159138663 + 96865641 96871762 L1PA7 6471 + 1819 6467 11330 343 1 6 97 1 0 99 12 13 201 2 0 5 0 2 49 4 6 794 0 1 66 656 14 30 7 11 29 0 2 16 0 4 201 1 5 370 0 2 22 0 2 72 0 3 20 0 2 214 0 6 31 297 0 112 0 8 167 295 0 111 1 0 69 0 3 307 306 6 207 11 12 55 0 4 53 0 3 24 0 2 85 22 30 117 2 0 28 2 0 4 0 1 165 2 0 5 4 6 268 0 1 49 2 0 8 chain 551660 chr7 159138663 + 96887386 96893529 L1PA3long 6157 - 2 6157 1229 847 0 4 693 0 8 1979 1 0 101 0 1 671 0 4 1406 6 0 223 0 2 216 chain 22137 chr7 159138663 + 96894747 96894978 AluYa5 310 + 74 305 119639 231 chain 24220 chr7 159138663 + 96896586 96896873 AluYc3 301 - 15 301 109095 173 1 0 113 chain 3005 chr7 159138663 + 96898972 96899031 L1MDa 1598 - 201 260 224943 22 2 0 13 7 9 15 chain 28909 chr7 159138663 + 96911909 96912348 MLT2A2 560 + 0 560 89423 183 55 62 47 0 98 13 1 12 43 0 5 97 chain 212022 chr7 159138663 + 96937830 96940237 L1PA5 6144 + 3710 6128 18361 148 0 12 2015 1 0 96 6 6 141 chain 59713 chr7 159138663 + 96944848 96945628 LTR17 781 + 0 781 52985 326 2 1 46 48 28 308 10 32 40 chain 6930 chr7 159138663 + 96949613 96950339 MER57A-int 1588 - 992 1500 177962 31 275 255 60 332 134 28 chain 3783 chr7 159138663 + 96952237 96952281 U5 65 + 0 44 210617 44 chain 5472 chr7 159138663 + 96957633 96957699 L1P2 5180 + 39 105 190282 66 chain 521205 chr7 159138663 + 96959075 96965513 L1PA6 6164 + 13 6157 5038 272 5 3 18 0 4 199 0 1 59 1 0 337 0 4 180 0 3 344 5 14 816 0 5 112 0 1 705 321 0 40 1 0 55 3 0 5 0 2 336 1 0 407 0 1 434 0 4 664 0 1 1118 chain 26213 chr7 159138663 + 96981612 96981921 AluYk4 311 + 0 307 99156 123 2 0 184 chain 6668 chr7 159138663 + 96992810 96992903 MLT2B1 522 - 72 166 179927 55 1 2 37 chain 13377 chr7 159138663 + 96995402 96995816 L1PA7 6471 + 3994 4412 146792 47 6 7 10 2 3 175 158 160 16 chain 12201 chr7 159138663 + 96996251 96996402 L1PA7 6471 + 5050 5193 151421 16 9 1 126 chain 106435 chr7 159138663 + 96996402 96997662 L1PA7 6471 + 5197 6470 35143 424 0 3 71 0 4 298 1 0 20 0 1 113 0 1 193 1 6 139 chain 5198 chr7 159138663 + 97000921 97001002 LOR1b 457 + 0 91 193041 22 10 20 49 chain 25327 chr7 159138663 + 97007531 97007809 AluYb8 318 - 0 278 103085 278 chain 29818 chr7 159138663 + 97073553 97073868 AluYb8 318 + 0 315 85385 315 chain 3831 chr7 159138663 + 97078359 97078402 MER21C 908 - 821 864 209919 43 chain 38981 chr7 159138663 + 97078846 97079290 L1PA6 6164 + 5712 6156 70765 444 chain 15047 chr7 159138663 + 97079622 97079840 MER34D 576 - 340 559 141186 5 1 0 145 0 1 38 15 16 14 chain 10448 chr7 159138663 + 97080018 97080205 LTR73 568 + 170 350 158499 73 2 0 5 7 1 12 1 0 5 22 24 60 chain 22382 chr7 159138663 + 97082756 97083397 L1PA8 5853 - 0 329 118576 92 314 4 16 2 1 43 7 0 18 2 1 62 1 9 45 1 0 38 chain 6468 chr7 159138663 + 97101521 97101602 MER5A 189 + 24 105 181490 81 chain 28150 chr7 159138663 + 97121589 97121940 THE1A 353 - 0 351 92459 351 chain 6051 chr7 159138663 + 97125041 97125134 MLT1E2 623 + 525 622 184805 41 9 13 43 chain 16676 chr7 159138663 + 97161656 97161873 THE1B 368 - 0 215 136476 46 0 1 127 2 0 30 1 0 11 chain 554464 chr7 159138663 + 97161883 97168335 L1PA3long 6157 + 7 6149 887 170 0 1 10 0 2 746 0 1 2194 317 1 300 0 1 1619 0 1 948 1 0 6 0 1 141 chain 442877 chr7 159138663 + 97187241 97192913 L1PA8A 6298 + 572 6291 8961 6 6 0 451 7 11 62 0 4 14 0 2 14 4 1 42 0 6 17 0 2 161 0 3 20 4 1 113 6 8 403 2 1 458 0 1 76 2 0 52 10 0 50 9 10 197 0 4 199 4 8 401 1 0 278 0 1 29 0 4 54 1 0 147 0 1 263 0 5 98 0 1 35 8 10 382 0 2 47 8 23 106 1 2 4 1 0 287 33 33 41 0 1 40 6 7 22 1 0 176 0 4 16 0 5 75 5 4 109 0 1 608 chain 99093 chr7 159138663 + 97203427 97204599 L1PA7 6471 - 3 1175 37000 7 4 0 323 2 3 518 0 3 318 chain 5942 chr7 159138663 + 97208268 97208339 L1PA8 5853 + 5778 5849 185763 71 chain 142890 chr7 159138663 + 97213862 97215780 L1PA8 5853 + 3914 5853 25666 190 0 1 234 2 3 23 8 11 252 11 34 343 14 9 73 1 0 477 9 8 38 2 0 70 1 0 7 12 17 36 2 1 19 1 0 93 chain 76297 chr7 159138663 + 97227055 97227930 MER11D 897 + 0 897 45312 432 2 1 160 1 24 280 chain 4585 chr7 159138663 + 97228500 97228570 7SK 245 - 171 243 199796 37 7 9 26 chain 5129 chr7 159138663 + 97228908 97229011 MER3 215 + 61 169 193788 49 30 35 24 chain 564965 chr7 159138663 + 97242968 97249000 L1HS 6032 + 0 6031 209 483 1 0 2578 1 0 560 0 1 2409 chain 37618 chr7 159138663 + 97258289 97258705 L1PA4 6152 + 5737 6152 72663 265 1 0 150 chain 33837 chr7 159138663 + 97269166 97269534 L1PA2 6032 + 5666 6032 77876 353 2 0 13 chain 24443 chr7 159138663 + 97273143 97273477 MER1A 529 - 0 325 107841 55 25 16 254 chain 122128 chr7 159138663 + 97273846 97275452 THE1B-int 1605 + 1 1605 30336 288 0 2 139 1 26 134 0 1 4 4 3 240 18 22 593 13 14 89 34 0 49 chain 2816 chr7 159138663 + 97275370 97275401 THE1B-int 1605 + 1561 1592 228527 31 chain 23940 chr7 159138663 + 97275452 97275780 THE1B 368 + 0 342 110692 44 0 15 48 3 4 61 1 0 8 0 1 4 1 0 108 1 0 49 chain 26730 chr7 159138663 + 97281010 97281303 AluYk4 311 + 0 293 97222 293 chain 12661 chr7 159138663 + 97289306 97289467 L1PA7 6471 + 6311 6469 149600 146 3 0 12 chain 4969 chr7 159138663 + 97311849 97311921 MER21-int 1364 + 61 126 195495 6 7 0 59 chain 126713 chr7 159138663 + 97330826 97332215 L1PA3long 6157 + 4762 6157 28877 1374 0 6 15 chain 52260 chr7 159138663 + 97339355 97339957 L1PA6 6164 - 3032 3634 57192 602 chain 176401 chr7 159138663 + 97339957 97342038 L1PA6 6164 + 3142 6159 21314 47 0 1 73 1 0 13 0 3 6 3 0 15 1 0 96 1 0 663 0 933 320 0 4 734 0 1 108 chain 313599 chr7 159138663 + 97342084 97346503 L1PB1 5432 + 1106 5422 12872 283 0 1 10 7 24 159 4 6 127 88 0 127 0 4 225 0 5 344 4 0 19 6 0 37 0 1 21 4 10 68 1 0 140 1 8 93 0 1 7 2 1 756 0 1 12 18 18 4 0 1 109 2 4 124 8 10 95 1 2 62 21 3 349 2 3 55 0 1 9 14 11 131 1 0 36 4 0 82 1 3 99 0 8 288 1 2 9 5 0 24 1 0 9 1 0 10 16 10 53 2 1 15 1 0 45 1 0 18 39 22 6 2 0 4 1 0 17 2 0 22 1 0 21 1 0 13 1 0 18 chain 13622 chr7 159138663 + 97389145 97389416 L1PB1 5432 - 5 252 145891 5 2 0 31 1 0 20 2 1 24 2 0 15 1 0 4 2 0 19 29 17 10 1 0 45 6 5 10 2 1 40 chain 519021 chr7 159138663 + 97389748 97395856 L1PA5 6144 + 3 6132 5267 44 0 1 88 8 22 910 13 16 85 9 0 446 9 0 353 1 4 273 0 2 9 2 0 674 0 4 33 3 16 282 0 5 105 1 0 699 9 14 341 6 0 103 4 0 1200 1 2 159 0 1 238 chain 4195 chr7 159138663 + 97395941 97395992 MLT1E2 623 + 569 623 204623 16 0 3 35 chain 28519 chr7 159138663 + 97397808 97398109 AluYb9 318 + 12 313 91102 301 chain 140835 chr7 159138663 + 97407211 97408784 L1PA3long 6157 - 4573 6149 25908 647 0 1 412 0 1 81 1 2 432 chain 409292 chr7 159138663 + 97408784 97413333 L1PA3long 6157 + 1588 6157 9822 59 0 2 2242 0 1 674 0 1 76 0 3 750 0 13 748 chain 525434 chr7 159138663 + 97414929 97421049 L1PA5 6144 + 3 6144 4638 201 0 1 428 19 20 501 1 4 430 0 1 46 0 2 97 0 18 128 0 1 87 1 4 1192 4 3 515 1 0 1170 2 0 1286 5 0 6 chain 516784 chr7 159138663 + 97439689 97445800 L1PA6 6164 + 1 6162 5510 84 0 4 160 5 7 253 2 1 17 0 28 289 0 1 83 0 4 303 0 1 229 0 4 245 8 9 237 0 1 933 1 0 295 0 1 578 1 2 121 0 1 1939 0 1 171 19 21 138 chain 27618 chr7 159138663 + 97445804 97446108 AluYk11 308 + 0 307 94301 40 0 3 264 chain 4330 chr7 159138663 + 97447996 97448054 L1MA4 2864 + 2750 2806 202830 17 2 0 39 chain 3427 chr7 159138663 + 97448581 97448621 MIR 256 + 72 112 216623 40 chain 79808 chr7 159138663 + 97479473 97480398 L1PA5 6144 - 0 927 43678 64 2 0 781 1 5 77 chain 34064 chr7 159138663 + 97480398 97480766 L1PA5 6144 + 4876 5244 77282 368 chain 7578 chr7 159138663 + 97491500 97491585 L1PA5 6144 + 6053 6138 173677 85 chain 54490 chr7 159138663 + 97503240 97503995 MER11C 1089 - 319 1089 56033 25 1 2 5 0 1 38 1 0 4 1 5 304 1 0 63 4 8 21 7 8 23 7 16 73 3 0 174 chain 8145 chr7 159138663 + 97507590 97507720 LTR2 463 - 108 222 170256 54 20 3 47 0 1 9 chain 19935 chr7 159138663 + 97547983 97548244 L1PA8 5853 + 5586 5842 127345 20 7 5 71 1 0 58 2 1 19 1 0 82 chain 12384 chr7 159138663 + 97551234 97551394 L1MA8 2339 + 1931 2088 150692 23 2 0 55 1 0 79 chain 106872 chr7 159138663 + 97565060 97566447 LTR12C 1709 + 0 1708 35013 260 1 2 37 1 2 35 5 48 80 0 3 183 0 278 184 1 0 4 4 2 97 21 13 101 0 1 231 1 0 62 1 0 62 0 7 16 chain 82541 chr7 159138663 + 97570328 97571358 LTR5A 1029 - 0 1029 42522 877 6 5 147 chain 345461 chr7 159138663 + 97580630 97584705 HERVE-int 4064 - 0 4064 11746 463 2 1 123 0 3 71 2 0 900 2 0 195 1 2 201 5 4 566 1 2 722 4 1 523 7 0 287 chain 23942 chr7 159138663 + 97602487 97602975 MER51E 476 - 0 476 110674 61 2 0 9 4 0 7 9 12 40 53 65 117 17 1 21 47 39 93 0 3 8 chain 7942 chr7 159138663 + 97621984 97622105 L1MB2 1706 - 172 289 171365 16 10 6 95 chain 2902 chr7 159138663 + 97636840 97636871 LTR34 700 - 235 266 227011 31 chain 24023 chr7 159138663 + 97654590 97654872 AluY 311 + 11 298 110197 120 0 5 162 chain 17770 chr7 159138663 + 97657964 97658633 L1MA3 4352 - 0 328 133511 21 3 0 3 1 0 14 11 10 16 1 0 6 1 0 17 299 0 5 2 0 81 5 9 57 1 0 8 40 14 56 10 0 11 chain 3484 chr7 159138663 + 97697930 97697967 MER3 215 - 17 54 215605 37 chain 6017 chr7 159138663 + 97713759 97713868 LTR36 617 - 492 609 185074 45 1 3 9 1 0 4 6 16 5 3 0 35 chain 2626 chr7 159138663 + 97729908 97729985 L1M4 1397 - 471 547 231341 16 0 24 10 29 4 22 chain 5878 chr7 159138663 + 97730612 97730690 THE1B 368 + 293 368 186395 37 3 0 38 chain 4825 chr7 159138663 + 97775730 97775792 HY3 101 - 5 68 197072 49 0 1 13 chain 9347 chr7 159138663 + 97813884 97813997 MER4B 649 + 459 572 163812 113 chain 8951 chr7 159138663 + 97830011 97830126 MER2 342 - 96 211 165867 115 chain 3352 chr7 159138663 + 97863765 97863834 MSTB1 431 + 359 430 218012 22 20 22 27 chain 18600 chr7 159138663 + 97877098 97877326 AluJr 308 - 69 297 131227 228 chain 5584 chr7 159138663 + 97895144 97895215 LTR24 460 - 380 451 189237 71 chain 29647 chr7 159138663 + 97919490 97919806 AluYb8 318 - 2 318 86082 316 chain 29693 chr7 159138663 + 97945281 97945637 THE1B 368 + 0 356 85857 197 0 1 133 1 0 25 chain 25338 chr7 159138663 + 97967472 97967752 AluYc 301 + 10 290 103033 280 chain 28836 chr7 159138663 + 97977115 97977456 L1PA7 6471 + 6123 6467 89741 84 0 1 59 0 2 198 chain 12562 chr7 159138663 + 97979139 97979285 AluSp 311 + 53 198 149999 79 1 0 66 chain 6522 chr7 159138663 + 98054710 98054869 L1MA5A 2387 + 2128 2266 181071 28 2 0 12 0 5 14 1 0 28 37 16 15 8 6 14 chain 5462 chr7 159138663 + 98090149 98090216 L1MB3 1562 - 234 301 190389 67 chain 3643 chr7 159138663 + 98098031 98098072 THE1D 372 + 331 372 212933 41 chain 43919 chr7 159138663 + 98122942 98123677 L1PB1 5432 - 23 717 64311 5 2 0 13 1 0 21 1 0 5 1 0 19 2 0 6 16 13 14 8 0 18 3 0 15 1 0 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 1 0 9 1 2 97 13 12 179 3 4 80 9 0 16 chain 31728 chr7 159138663 + 98153090 98153510 MER1A 529 - 6 430 81280 52 14 18 354 chain 3713 chr7 159138663 + 98166179 98166247 L1MA6 2487 - 87 148 211737 22 3 0 22 7 3 14 chain 46091 chr7 159138663 + 98209670 98210224 MER41A 554 - 0 554 61954 554 chain 4690 chr7 159138663 + 98272284 98272341 MLT1F 544 - 250 307 198638 57 chain 21541 chr7 159138663 + 98274913 98275186 AluSc 308 - 36 308 121999 111 13 12 149 chain 20910 chr7 159138663 + 98284184 98284513 MSTA 426 + 7 389 124242 53 6 7 43 18 46 80 2 0 19 1 0 4 0 7 26 9 29 68 chain 14471 chr7 159138663 + 98285593 98285836 MSTA 426 - 6 265 142979 61 0 8 34 0 2 5 6 24 22 3 9 19 2 0 67 16 0 8 chain 23300 chr7 159138663 + 98292222 98292488 L1PA7 6471 - 10 276 114201 266 chain 3771 chr7 159138663 + 98293711 98293757 MLT1H 522 - 25 71 210799 46 chain 25560 chr7 159138663 + 98305667 98306021 L1PA8 5853 - 0 347 101930 92 2 1 19 2 1 47 16 14 71 2 0 44 1 0 58 chain 64688 chr7 159138663 + 98344861 98345586 L1PA4 6152 + 5410 6136 50701 460 0 1 137 0 1 29 0 1 52 2 0 45 chain 9950 chr7 159138663 + 98350596 98350742 THE1B 368 - 205 360 160836 28 19 28 99 chain 4559 chr7 159138663 + 98363348 98363443 MER96B 391 - 294 390 200120 32 23 25 19 1 0 20 chain 34288 chr7 159138663 + 98391901 98392339 L1PA7 6471 - 3 441 77229 138 23 23 277 chain 9309 chr7 159138663 + 98392340 98392447 U6 107 - 0 107 164016 107 chain 8046 chr7 159138663 + 98416374 98416474 MER66B 489 - 341 441 170781 100 chain 39182 chr7 159138663 + 98416511 98417350 LTR10D 510 - 0 510 70487 248 8 1 65 325 0 101 1 0 11 3 6 22 0 1 55 chain 3717 chr7 159138663 + 98427090 98427134 MLT1B 390 + 281 325 211674 44 chain 6411 chr7 159138663 + 98478208 98478341 MER58B 340 + 64 213 181939 18 0 1 14 39 46 55 0 8 7 chain 18121 chr7 159138663 + 98501308 98501524 THE1B 368 - 0 215 132537 200 1 0 15 chain 19647 chr7 159138663 + 98522102 98522329 AluY 311 + 74 300 128257 59 1 0 167 chain 24187 chr7 159138663 + 98527928 98528209 AluSp 311 + 11 290 109288 121 2 0 158 chain 5665 chr7 159138663 + 98530307 98530373 MER2 342 - 127 193 188427 66 chain 22025 chr7 159138663 + 98633827 98634120 AluJb 308 + 11 302 120116 30 1 0 9 9 8 244 chain 26802 chr7 159138663 + 98656740 98657020 AluYa8 305 + 0 280 96977 280 chain 9542 chr7 159138663 + 98683034 98683159 MSTA 426 + 287 426 162869 14 1 15 110 chain 2979 chr7 159138663 + 98758236 98758300 L1MDa 1598 - 992 1064 225464 24 16 24 24 chain 63628 chr7 159138663 + 98761535 98762250 L1PA4 6152 + 5415 6135 51177 588 0 1 34 0 1 31 0 3 62 chain 13766 chr7 159138663 + 98765403 98765572 MER1A 529 + 243 421 145379 157 0 9 12 chain 5922 chr7 159138663 + 98771545 98771620 L1MB3 1562 - 40 115 185970 75 chain 30546 chr7 159138663 + 98771638 98772100 MER1A 529 + 0 486 83347 17 3 21 36 0 11 7 15 4 63 1 0 118 1 0 45 3 4 72 0 7 51 3 0 6 6 9 15 chain 9070 chr7 159138663 + 98789745 98789869 MER85 139 - 0 134 165215 29 4 14 91 chain 22096 chr7 159138663 + 98826233 98826470 L1PA2 6032 + 5718 5955 119804 237 chain 14741 chr7 159138663 + 98835531 98835704 L1PA16 3655 - 109 282 142138 173 chain 11353 chr7 159138663 + 98896390 98896514 L1PA2 6032 - 1 125 154886 124 chain 8977 chr7 159138663 + 98945364 98945468 AluSp 311 + 194 298 165729 104 chain 23318 chr7 159138663 + 98951115 98951400 AluSp 311 - 27 310 114107 155 2 0 128 chain 24449 chr7 159138663 + 98952460 98952755 AluSp 311 + 7 300 107810 122 2 0 171 chain 24555 chr7 159138663 + 98954253 98954542 AluY 311 + 11 297 107221 120 0 2 157 5 0 7 chain 21832 chr7 159138663 + 98956159 98956453 AluSp 311 - 7 311 120882 65 10 11 195 5 14 19 chain 23403 chr7 159138663 + 98986262 98986553 AluSg7 307 - 15 307 113632 165 1 2 125 chain 77529 chr7 159138663 + 99012667 99013646 LTR13 1007 - 0 1007 44727 94 0 5 6 12 17 69 0 1 96 0 1 17 0 15 300 4 5 116 0 2 192 2 0 71 chain 165838 chr7 159138663 + 99023774 99025740 SVA_D 2077 + 0 2075 22536 19 5 0 38 0 2 41 1 0 332 0 14 324 40 0 150 1 0 24 4 44 46 8 9 37 0 49 54 48 0 36 0 1 127 1 98 630 chain 2529 chr7 159138663 + 99024898 99024928 SVA_D 2077 + 1310 1341 96066 5 5 6 20 chain 27546 chr7 159138663 + 99039997 99040308 AluYf4 310 + 0 310 94518 209 1 0 101 chain 21623 chr7 159138663 + 99059793 99060077 AluY 311 + 0 269 121686 123 18 3 143 chain 6808 chr7 159138663 + 99067306 99067378 tRNA-Trp-TGG 72 + 0 72 178896 72 chain 34044 chr7 159138663 + 99068783 99069188 L1PA8A 6298 + 5875 6290 77559 376 0 10 29 chain 21029 chr7 159138663 + 99069232 99069500 AluSx1 309 + 38 301 123818 91 9 0 134 0 2 10 0 2 24 chain 10281 chr7 159138663 + 99071788 99071936 MER30 238 - 0 166 159232 109 13 31 26 chain 21660 chr7 159138663 + 99080201 99080492 AluSp 311 + 10 296 121540 36 11 7 140 5 4 99 chain 4524 chr7 159138663 + 99098896 99098963 LTR12F 595 + 75 137 200506 28 6 1 33 chain 36340 chr7 159138663 + 99110453 99110862 L1PA3long 6157 - 1 413 74448 364 1 4 44 chain 8508 chr7 159138663 + 99114560 99114659 MER30 238 - 1 100 168254 99 chain 59116 chr7 159138663 + 99147011 99147679 L1PA5 6144 + 5473 6141 53321 668 chain 534384 chr7 159138663 + 99251717 99257824 L1PA4 6152 - 12 6140 3667 622 2 1 158 0 3 51 0 2 1296 5 4 716 0 1 109 1 0 12 1 0 963 0 2 1078 0 3 76 0 2 65 0 1 142 0 1 586 0 10 224 chain 4503 chr7 159138663 + 99268787 99268854 Charlie12 129 + 65 129 200749 5 1 0 28 1 0 3 1 0 28 chain 470795 chr7 159138663 + 99283642 99289070 L1PA4 6152 + 0 6151 8007 571 6 5 154 4 0 104 18 1 95 0 4 297 1 2 201 0 1 1259 0 5 471 0 1 344 0 1 8 0 714 118 0 4 515 0 4 425 0 4 826 0 6 11 chain 185844 chr7 159138663 + 99289077 99291467 L1P2 5180 - 2583 5178 20426 70 0 1 32 0 1 1042 0 2 9 2 0 132 1 3 371 0 4 130 1 16 217 18 13 39 1 0 69 8 0 34 8 9 118 0 195 88 chain 16965 chr7 159138663 + 99315690 99315882 L1PA4 6152 + 5936 6128 135679 192 chain 292492 chr7 159138663 + 99341630 99345150 L1PA5 6144 + 2606 6144 13862 131 0 1 184 0 1 261 2 1 322 0 2 357 10 8 170 0 13 6 3 4 275 1 5 74 0 1 200 2 0 1405 0 2 101 3 1 13 chain 55828 chr7 159138663 + 99352916 99353680 L1MA2 4263 - 985 1758 55233 373 0 3 33 0 2 47 1 0 39 10 19 60 5 0 60 5 6 131 chain 306931 chr7 159138663 + 99370689 99374472 L1PA7 6471 + 2678 6465 13134 103 1 0 753 5 4 41 0 5 204 9 10 172 0 1 176 1 0 5 5 6 324 0 3 89 1 0 4 0 1 183 4 2 857 2 0 352 1 4 160 3 2 320 2 0 6 chain 10726 chr7 159138663 + 99386857 99386987 THE1D 372 + 194 324 157298 130 chain 49101 chr7 159138663 + 99393352 99393936 L1PA7 6471 - 12 596 59668 584 chain 6752 chr7 159138663 + 99396521 99396679 L1PA15 4387 - 170 306 179309 11 4 0 57 41 24 20 2 1 23 chain 352446 chr7 159138663 + 99397382 99401369 L1P1 4361 - 346 4360 11537 242 0 1 857 0 10 338 0 1 1110 0 1 722 0 14 718 chain 31440 chr7 159138663 + 99404505 99404915 LTR15 485 - 65 485 81748 48 1 6 13 3 4 63 0 4 178 0 1 69 1 0 34 chain 28074 chr7 159138663 + 99406449 99406822 LTR71A 459 - 68 445 92748 126 7 10 76 15 16 149 chain 560290 chr7 159138663 + 99406822 99412854 L1PA2 6032 + 0 6031 337 3392 1 0 2639 chain 21718 chr7 159138663 + 99416672 99417032 MSTA 426 + 0 410 121322 90 25 47 69 2 0 9 29 40 7 1 0 34 0 20 94 chain 16113 chr7 159138663 + 99426889 99427092 MER4E1 777 - 8 216 138018 137 0 1 18 1 5 47 chain 23747 chr7 159138663 + 99430069 99430324 L1PA4 6152 + 5897 6152 111791 255 chain 36613 chr7 159138663 + 99430809 99431289 LTR15 485 - 5 485 74081 44 4 0 89 1 2 64 0 4 218 6 5 54 chain 7530 chr7 159138663 + 99433813 99433910 LTR15 485 + 387 480 173973 49 4 0 44 chain 27552 chr7 159138663 + 99434646 99434971 AluYk4 311 + 0 311 94497 126 14 0 185 chain 6285 chr7 159138663 + 99456852 99456928 MER5A1 166 - 89 165 182923 76 chain 60552 chr7 159138663 + 99465740 99466531 MER4E1 777 + 0 770 52540 247 1 0 26 10 7 151 9 0 6 1 0 101 21 13 103 0 1 115 chain 1143 chr7 159138663 + 99471060 99471159 MER30 238 - 7 106 157494 99 chain 65556 chr7 159138663 + 99471193 99471936 L1PA5 6144 - 12 758 50312 344 1 4 398 chain 554 chr7 159138663 + 99471937 99471985 MER30 238 - 144 192 157494 48 chain 6394 chr7 159138663 + 99484455 99484528 HERVL-int 5654 + 3663 3736 182074 73 chain 169339 chr7 159138663 + 99484931 99486888 SVA_D 2077 - 0 2077 22139 18 2 0 293 2 1 120 0 1 222 0 49 175 48 0 111 0 51 82 0 36 15 2 0 278 0 40 266 0 1 293 5 0 25 chain 4014 chr7 159138663 + 99485763 99485811 SVA_D 2077 - 1006 1106 97397 28 0 52 20 chain 24808 chr7 159138663 + 99520023 99520316 AluY 311 + 5 298 105844 293 chain 43843 chr7 159138663 + 99548328 99548849 MER9a1 513 - 0 513 64395 384 9 1 128 chain 24249 chr7 159138663 + 99560926 99561221 AluYf4 310 - 14 310 108950 89 1 2 205 chain 80795 chr7 159138663 + 99576137 99577185 LTR13 1007 + 0 1007 43271 73 2 0 70 56 13 148 1 0 77 4 5 11 0 1 248 0 2 46 0 3 278 3 1 31 chain 11266 chr7 159138663 + 99611084 99611225 Tigger2 2703 + 2330 2477 155169 51 0 6 90 chain 11205 chr7 159138663 + 99623894 99624068 Tigger3 1187 - 291 465 155402 5 1 0 88 9 6 7 0 7 33 4 1 27 chain 10129 chr7 159138663 + 99639503 99639654 MER4B 649 + 37 229 159950 105 0 1 4 4 3 7 0 42 7 2 1 22 chain 3111 chr7 159138663 + 99641298 99641331 MER31A 484 + 77 110 222737 33 chain 23390 chr7 159138663 + 99667243 99667524 AluSp 311 - 19 300 113695 281 chain 26102 chr7 159138663 + 99694443 99694748 AluYk4 311 + 0 306 99613 86 0 1 219 chain 9772 chr7 159138663 + 99703296 99703420 FLAM_C 140 + 9 136 161740 108 3 6 13 chain 21861 chr7 159138663 + 99712068 99712351 AluSz 310 + 11 299 120778 22 3 0 228 0 10 12 2 0 16 chain 23211 chr7 159138663 + 99714593 99714867 AluSc 308 + 5 279 114636 274 chain 9049 chr7 159138663 + 99730784 99730958 MER51D 577 - 0 168 165321 40 2 1 27 1 0 11 4 0 24 26 26 39 chain 7073 chr7 159138663 + 99731737 99731818 MER1A 529 - 140 221 176930 81 chain 21749 chr7 159138663 + 99738638 99738939 AluSp 311 - 16 302 121211 8 12 0 98 4 0 77 4 5 98 chain 82528 chr7 159138663 + 99741803 99742877 MER11B 1079 - 0 1079 42526 11 5 4 141 7 13 29 2 0 109 11 7 69 0 3 98 34 32 259 0 3 42 3 0 29 0 5 225 chain 29196 chr7 159138663 + 99759314 99759754 L1PA8 5853 + 5452 5853 88065 112 1 0 7 4 1 14 27 0 27 2 0 12 4 0 53 2 1 13 0 1 47 2 1 19 1 0 93 chain 2258 chr7 159138663 + 99760311 99760341 L1PA8 5853 + 5710 5740 235886 30 chain 7602 chr7 159138663 + 99760364 99760450 L1PA8 5853 + 5761 5847 173530 86 chain 15926 chr7 159138663 + 99791867 99792127 Tigger1 2417 - 1913 2187 138592 74 0 9 43 4 0 31 24 25 12 7 15 65 chain 8993 chr7 159138663 + 99859892 99860074 L1MB3 1562 - 141 322 165642 10 0 3 16 44 41 93 5 4 14 chain 5199 chr7 159138663 + 99889154 99889215 MSTA 426 + 358 419 193026 61 chain 8064 chr7 159138663 + 99928403 99928500 HY3 101 - 4 101 170671 97 chain 24657 chr7 159138663 + 99978614 99978897 AluY 311 + 7 290 106686 125 0 1 142 1 0 15 chain 42337 chr7 159138663 + 99979178 99980082 LTR12C 1709 + 0 1068 66221 20 1 10 247 6 15 122 0 1 4 1 0 36 211 318 16 1 0 48 1 0 4 35 113 50 43 6 20 8 8 30 chain 2274 chr7 159138663 + 99979898 99979922 LTR12C 1709 + 1044 1068 235661 24 chain 7931 chr7 159138663 + 99984731 99984826 MER85 139 - 43 138 171437 95 chain 22144 chr7 159138663 + 100077616 100077878 AluSc 308 + 32 294 119607 262 chain 3524 chr7 159138663 + 100078069 100078108 MER6A 605 - 476 515 214978 39 chain 4880 chr7 159138663 + 100080335 100080398 MER30B 195 + 113 174 196491 7 1 0 27 1 0 27 chain 19089 chr7 159138663 + 100093510 100093750 AluSp 311 + 58 291 129846 67 1 0 7 3 0 90 4 1 68 chain 23078 chr7 159138663 + 100117000 100117271 AluSp 311 - 34 304 115256 135 1 0 135 chain 158709 chr7 159138663 + 100119857 100122236 SVA_D 2077 - 16 2077 23501 120 0 20 479 0 49 4 0 1 53 0 78 152 0 1 66 0 2 88 45 5 25 50 0 15 2 0 25 412 27 57 40 0 31 0 40 343 0 4 334 0 5 12 9 8 17 chain 1746 chr7 159138663 + 100120819 100120864 SVA_D 2077 - 902 947 77219 45 chain 1940 chr7 159138663 + 100120889 100120939 SVA_D 2077 - 972 1074 77219 12 0 1 7 0 51 31 chain 15984 chr7 159138663 + 100120981 100121393 SVA_D 2077 - 1116 1186 77219 1 386 44 25 chain 5448 chr7 159138663 + 100121249 100121306 SVA_D 2077 - 553 610 162793 57 chain 1812 chr7 159138663 + 100121306 100121368 SVA_D 2077 - 835 897 99232 62 chain 3563 chr7 159138663 + 100179034 100179116 MLT1A0 366 + 42 123 214272 34 27 26 21 chain 79092 chr7 159138663 + 100315765 100316666 MER11D 897 + 0 897 44007 282 6 0 501 3 5 109 chain 166899 chr7 159138663 + 100337919 100340469 SVA_F 1814 - 0 1805 22409 639 633 0 213 126 14 17 0 1 49 1 0 872 chain 19060 chr7 159138663 + 100338564 100339080 SVA_F 1814 - 644 995 78277 42 0 1 116 1 0 49 0 15 18 129 0 31 1 0 43 50 0 36 chain 10918 chr7 159138663 + 100338790 100338904 SVA_F 1814 - 694 808 134699 114 chain 4596 chr7 159138663 + 100338994 100339044 SVA_F 1814 - 669 719 128689 50 chain 8641 chr7 159138663 + 100339080 100339174 SVA_F 1814 - 755 847 128689 48 1 0 10 1 0 34 chain 2691 chr7 159138663 + 100339404 100339432 SVA_F 1814 - 725 753 143499 28 chain 1514 chr7 159138663 + 100339432 100339473 SVA_F 1814 - 1153 1194 78277 41 chain 29830 chr7 159138663 + 100374336 100374653 AluYb8 318 - 1 318 85350 317 chain 27457 chr7 159138663 + 100415473 100415788 AluYk4 311 - 0 311 94795 5 3 0 231 1 0 75 chain 24391 chr7 159138663 + 100425881 100426197 AluSz 310 + 3 306 108130 206 6 0 21 8 1 75 chain 411016 chr7 159138663 + 100438714 100444345 Harlequin-int 5206 + 141 5206 9777 8 0 2 60 0 3 74 0 1 29 0 1 57 10 0 48 0 11 45 1 0 5 3 0 348 4 5 169 1 0 84 5 9 74 5 0 115 1 0 274 3 4 961 0 9 265 0 1 618 6 7 236 16 12 534 5 51 171 321 0 285 1 0 4 0 1 150 0 4 185 307 0 127 0 2 16 chain 36772 chr7 159138663 + 100444353 100444807 LTR2 463 + 8 463 73844 351 15 16 88 chain 24025 chr7 159138663 + 100496338 100496641 AluSp 311 + 0 297 110186 23 3 0 109 3 0 165 chain 42713 chr7 159138663 + 100516858 100517876 MER41A 554 - 0 554 65757 31 2 0 19 7 11 19 0 5 298 472 0 96 0 1 74 chain 37528 chr7 159138663 + 100517237 100517705 LTR2 463 + 0 463 72777 95 13 3 123 0 5 237 chain 26464 chr7 159138663 + 100519901 100520282 LTR7 482 + 7 475 98188 94 0 50 73 5 37 44 0 3 57 1 2 51 14 15 42 chain 288494 chr7 159138663 + 100520291 100524023 HERVH-int 3825 + 0 3825 14124 114 0 1 218 13 13 18 15 16 93 15 17 40 1 0 11 1 0 4 0 1 12 23 22 25 73 165 9 1 0 123 0 1 320 15 0 207 9 0 28 0 2 10 1 0 39 0 2 260 7 8 227 0 4 82 0 5 40 0 3 268 0 1 5 5 4 472 0 2 516 37 38 139 0 4 236 chain 40521 chr7 159138663 + 100526873 100527411 MER4D1 891 - 352 891 68563 108 1 0 114 2 0 200 3 4 55 0 1 4 1 0 4 12 15 34 chain 5332 chr7 159138663 + 100537135 100537197 MLT1A0 366 + 89 151 191712 62 chain 31016 chr7 159138663 + 100538241 100538613 L1PA6 6164 - 2 375 82486 184 1 2 187 chain 4066 chr7 159138663 + 100541894 100541969 MLT1I 406 + 312 388 206389 37 15 16 23 chain 24721 chr7 159138663 + 100614016 100614287 AluYf4 310 + 20 292 106325 186 0 1 85 chain 8517 chr7 159138663 + 100627384 100627536 MER51D 577 - 27 172 168212 13 2 1 26 1 0 16 3 0 7 15 13 69 chain 17266 chr7 159138663 + 100650828 100651077 L1MA2 4263 - 149 393 134877 9 1 0 47 7 0 83 16 19 86 chain 29856 chr7 159138663 + 100687123 100687488 L1PA6 6164 - 2 363 85258 8 3 0 322 1 0 31 chain 25950 chr7 159138663 + 100725411 100725943 LTR61 567 - 22 567 100212 15 6 3 10 1 2 9 11 10 130 12 0 55 1 0 28 8 56 19 0 1 4 53 54 55 3 0 20 25 19 33 12 0 22 chain 140455 chr7 159138663 + 100735043 100736635 SVA_C 1631 + 13 1631 26077 7 0 1 41 6 0 655 0 40 95 4 0 12 1 0 46 1 0 45 1 0 48 0 1 39 1 0 574 2 0 14 chain 21450 chr7 159138663 + 100754327 100754586 AluSp 311 + 16 299 122333 116 1 0 15 2 27 125 chain 23988 chr7 159138663 + 100768466 100768770 AluSg 306 + 1 305 110390 35 0 1 85 0 1 126 0 1 34 3 0 21 chain 75039 chr7 159138663 + 100793134 100794102 LTR5_Hs 974 - 0 974 46000 19 0 1 83 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 181 0 1 118 1 0 167 chain 25752 chr7 159138663 + 100833955 100834248 AluSp 311 + 4 297 101073 293 chain 11680 chr7 159138663 + 100834248 100834411 MER21A 919 - 578 739 153561 80 9 7 74 chain 24197 chr7 159138663 + 100836072 100836364 AluY 311 + 0 288 109231 123 0 3 1 7 0 161 chain 14772 chr7 159138663 + 100868335 100868530 MER30 238 + 30 238 142023 77 4 17 114 chain 25366 chr7 159138663 + 100893189 100893486 AluSp 311 + 3 300 102850 297 chain 23974 chr7 159138663 + 100906439 100906719 AluSp 311 + 11 295 110482 31 0 4 249 chain 6332 chr7 159138663 + 100913246 100913322 U6 107 - 28 107 182524 32 0 3 44 chain 23775 chr7 159138663 + 100915666 100915959 AluSp 311 + 6 298 111624 174 1 0 118 chain 26759 chr7 159138663 + 100936024 100936788 LTR8 732 + 218 729 97127 87 16 43 10 282 0 72 4 5 11 2 0 42 59 58 103 9 13 67 chain 24024 chr7 159138663 + 100941080 100941379 AluSp 311 + 8 307 110193 299 chain 8121 chr7 159138663 + 100949271 100949596 L1MB3 1562 + 1254 1551 170374 32 125 122 13 1 0 4 41 17 12 11 12 58 1 0 27 chain 84432 chr7 159138663 + 100952502 100953507 LTR13 1007 - 0 1007 41743 298 1 3 7 1 0 217 1 0 96 4 5 77 1 0 148 1 3 153 chain 20576 chr7 159138663 + 100963235 100963529 AluSq2 311 - 8 303 125372 147 22 23 125 chain 122906 chr7 159138663 + 100991688 100993150 LTR12C 1709 + 14 1709 30078 796 0 200 102 1 0 6 2 0 106 0 4 101 13 42 230 0 3 105 chain 182924 chr7 159138663 + 101001283 101003625 SVA_D 2077 - 4 2077 20688 672 4 0 13 74 0 174 0 1 5 49 0 71 0 1 46 69 0 52 0 2 84 44 8 4 0 1 22 4 1 12 2 0 62 40 0 811 1 0 9 1 0 4 0 5 13 chain 6449 chr7 159138663 + 101001972 101002046 SVA_D 2077 - 918 992 79448 74 chain 2733 chr7 159138663 + 101002225 101002257 SVA_D 2077 - 996 1079 118957 13 1 52 18 chain 2075 chr7 159138663 + 101002403 101002433 SVA_D 2077 - 954 987 237912 16 0 3 14 chain 650 chr7 159138663 + 101003637 101003705 SVA_D 2077 - 1972 2040 163559 68 chain 35025 chr7 159138663 + 101022830 101023271 MER41A 554 + 0 448 76154 137 0 6 285 1 2 18 chain 6213 chr7 159138663 + 101089769 101089844 LTR8 732 - 7 82 183468 75 chain 22272 chr7 159138663 + 101096376 101096652 AluSz6 309 + 10 287 119027 44 0 1 232 chain 45495 chr7 159138663 + 101134667 101135207 MER41A 554 - 0 541 62503 479 0 1 61 chain 3468 chr7 159138663 + 101139852 101139894 MER41A 554 - 4 46 215841 42 chain 25206 chr7 159138663 + 101144190 101144495 AluSx3 311 + 8 311 103707 125 2 0 178 chain 20678 chr7 159138663 + 101148787 101149142 MLT2A2 560 - 102 560 125042 45 9 118 58 73 71 36 5 1 129 chain 4658 chr7 159138663 + 101160721 101160772 THE1B 368 + 225 276 198978 51 chain 5875 chr7 159138663 + 101164145 101164232 MSTD 398 + 268 356 186422 12 6 7 69 chain 3707 chr7 159138663 + 101195236 101195309 MIRb 242 - 101 174 211839 11 8 15 6 7 0 41 chain 4125 chr7 159138663 + 101217805 101217851 LTR9 672 + 1 47 205575 46 chain 35033 chr7 159138663 + 101217862 101218321 LTR2 463 - 0 463 76140 88 14 15 213 0 1 82 0 3 37 1 0 24 chain 10617 chr7 159138663 + 101223198 101223363 THE1C 375 - 213 375 157744 9 20 0 9 0 17 127 chain 4826 chr7 159138663 + 101251000 101251054 MLT2A1 477 + 348 402 197068 54 chain 9943 chr7 159138663 + 101278615 101278763 MLT2A2 560 + 388 560 160870 12 0 11 37 11 24 88 chain 23442 chr7 159138663 + 101281342 101281703 THE1B 368 + 0 368 113420 117 7 4 48 1 0 21 42 53 125 chain 20582 chr7 159138663 + 101283261 101283601 Tigger3b 1229 - 602 959 125358 46 0 2 5 1 6 120 23 31 31 18 22 36 1 0 37 1 0 21 chain 10008 chr7 159138663 + 101292353 101292472 MER30 238 + 121 238 160546 50 2 0 67 chain 28604 chr7 159138663 + 101297756 101298292 MER4A1 472 - 10 392 90718 230 7 8 86 159 4 54 chain 7010 chr7 159138663 + 101299245 101299327 MER4A1 472 + 0 82 177399 82 chain 23134 chr7 159138663 + 101302954 101303315 MER4D1 891 - 508 891 114981 117 1 29 116 12 10 53 31 27 31 chain 11482 chr7 159138663 + 101305353 101305554 MER47B 469 - 135 404 154367 42 6 55 19 23 26 28 1 17 82 chain 28346 chr7 159138663 + 101306670 101307042 THE1C 375 + 0 375 91776 116 4 7 49 1 2 175 1 0 26 chain 12536 chr7 159138663 + 101320613 101320838 LTR8 732 + 507 732 150094 19 14 12 5 1 0 125 1 2 11 20 22 29 chain 20082 chr7 159138663 + 101327356 101327592 AluY 311 + 49 287 126882 83 0 1 85 0 1 68 chain 29703 chr7 159138663 + 101334206 101334515 AluYa5 310 - 1 310 85817 309 chain 28354 chr7 159138663 + 101338096 101338394 AluYb8 318 - 20 318 91748 298 chain 14753 chr7 159138663 + 101390437 101390632 MER107 203 + 0 203 142090 151 1 6 15 7 10 21 chain 8245 chr7 159138663 + 101403491 101403594 MER21C 908 - 101 204 169713 103 chain 24045 chr7 159138663 + 101423262 101423561 AluY 311 + 2 304 110077 33 1 2 72 0 1 22 0 1 171 chain 14209 chr7 159138663 + 101427009 101427203 MLT2A2 560 - 368 560 143849 14 15 13 165 chain 16415 chr7 159138663 + 101439970 101440186 AluY 311 + 82 299 137164 57 18 19 141 chain 24056 chr7 159138663 + 101441096 101441427 L1PA8 5853 + 5524 5847 110013 40 1 0 45 2 0 73 1 0 5 2 1 12 1 0 40 2 1 19 6 5 82 chain 25442 chr7 159138663 + 101464621 101464917 AluYk4 311 - 15 311 102490 296 chain 27122 chr7 159138663 + 101571955 101572249 AluYa5 310 - 16 310 95863 294 chain 31593 chr7 159138663 + 101578303 101578707 LTR7 482 + 0 475 81505 69 8 46 109 0 1 33 0 32 185 chain 17478 chr7 159138663 + 101626003 101626196 L1PA5 6144 - 0 193 134307 193 chain 3900 chr7 159138663 + 101648213 101648262 MER58B 340 - 240 290 208853 45 0 1 4 chain 12767 chr7 159138663 + 101695752 101696553 L1MB7 1623 - 136 567 149185 8 1 0 26 48 24 6 3 0 38 549 202 87 0 5 35 chain 48066 chr7 159138663 + 101715336 101716025 MER51A 677 - 0 677 60431 60 0 3 66 14 15 73 0 1 118 1 0 80 1 0 19 0 7 16 0 5 14 10 0 24 17 0 99 1 0 4 0 1 72 chain 25659 chr7 159138663 + 101724596 101725245 THE1D 372 + 0 372 101455 62 0 14 115 0 3 55 5 9 74 298 0 40 chain 26200 chr7 159138663 + 101728614 101728983 THE1C 375 + 1 375 99203 23 4 5 52 1 2 101 13 17 149 1 0 25 chain 4590 chr7 159138663 + 101780583 101780633 MADE1 96 - 0 50 199746 50 chain 11926 chr7 159138663 + 101792019 101792311 L1PB1 5432 - 35 315 152493 6 1 0 21 1 0 24 2 0 14 1 0 5 5 3 16 16 6 6 3 0 14 0 18 28 1 0 15 2 1 47 38 31 4 1 0 21 chain 21439 chr7 159138663 + 101834536 101834789 AluSp 311 - 35 288 122374 253 chain 82063 chr7 159138663 + 101880926 101881932 LTR13 1007 - 0 1007 42739 93 0 5 93 0 1 147 0 10 159 1 2 70 17 0 41 4 5 381 chain 8688 chr7 159138663 + 101912608 101913088 MSTB-int 1649 - 5 1542 167262 5 0 1 6 5 0 62 329 1390 73 chain 7360 chr7 159138663 + 101954981 101955073 MER39B 650 - 60 152 175037 92 chain 7930 chr7 159138663 + 101977280 101977379 HY3 101 + 0 99 171440 99 chain 25384 chr7 159138663 + 102033860 102034264 LTR35 598 + 45 434 102763 61 2 0 25 36 45 164 0 1 14 25 2 77 chain 83014 chr7 159138663 + 102046187 102047375 HSMAR1 1287 - 3 1221 42330 65 0 1 65 12 16 399 0 1 34 3 0 5 5 8 15 16 17 257 35 37 194 1 0 5 0 14 26 11 19 40 chain 22135 chr7 159138663 + 102093432 102093710 AluSp 311 - 24 301 119647 145 11 10 122 chain 25349 chr7 159138663 + 102118433 102118729 AluSp 311 - 15 311 102961 296 chain 34519 chr7 159138663 + 102120282 102120711 LTR13 1007 + 0 432 76879 73 2 0 52 0 2 114 1 3 137 4 5 46 chain 38283 chr7 159138663 + 102141944 102142869 L1PB1 5432 + 4851 5420 71735 50 2 4 75 0 3 30 330 0 90 1 2 9 3 0 24 2 0 9 1 0 11 5 1 8 2 0 53 3 1 16 1 0 44 1 0 15 4 0 12 9 0 19 2 0 5 1 0 14 2 0 24 1 0 13 0 1 8 0 3 9 1 0 16 chain 6477 chr7 159138663 + 102188076 102188152 AluSp 311 + 30 106 181414 76 chain 25349 chr7 159138663 + 102212096 102212392 AluSp 311 - 15 311 102960 296 chain 79414 chr7 159138663 + 102213938 102214909 LTR13 1007 + 0 1007 43864 73 2 0 52 0 2 114 0 2 138 4 5 90 0 26 238 0 1 74 0 1 92 0 5 94 chain 38283 chr7 159138663 + 102241105 102242030 L1PB1 5432 + 4851 5420 71734 50 2 4 75 0 3 30 330 0 90 1 2 9 3 0 24 2 0 9 1 0 11 5 1 8 2 0 53 3 1 16 1 0 44 1 0 15 4 0 12 9 0 19 2 0 5 1 0 14 2 0 24 1 0 13 0 1 8 0 3 9 1 0 16 chain 6477 chr7 159138663 + 102287167 102287243 AluSp 311 + 30 106 181413 76 chain 25349 chr7 159138663 + 102311176 102311472 AluSp 311 - 15 311 102959 296 chain 79711 chr7 159138663 + 102313010 102313981 LTR13 1007 + 0 1007 43730 73 2 0 52 0 2 114 0 2 138 4 5 90 0 26 238 0 1 74 0 1 92 0 5 94 chain 12181 chr7 159138663 + 102338082 102338248 L1PA8A 6298 - 6 172 151490 77 3 4 20 1 0 65 chain 26832 chr7 159138663 + 102340329 102340693 L1PA16 3655 - 536 900 96866 25 5 6 171 2 0 19 1 0 58 0 2 83 chain 28931 chr7 159138663 + 102343440 102343750 AluYa5 310 + 1 308 89322 131 3 0 176 chain 92705 chr7 159138663 + 102349782 102350797 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chain 23782 chr7 159138663 + 102546361 102546687 THE1A 353 - 0 353 111583 155 6 5 83 2 1 26 10 39 44 chain 38662 chr7 159138663 + 102547768 102548226 L1PA5 6144 - 0 457 71209 147 10 9 301 chain 28781 chr7 159138663 + 102548226 102548555 L1PA5 6144 + 5349 5678 89974 329 chain 24938 chr7 159138663 + 102563141 102563455 AluY 311 + 4 311 105118 129 18 10 7 0 3 151 2 0 7 chain 20052 chr7 159138663 + 102581807 102582051 LTR8 732 + 479 723 126964 244 chain 385184 chr7 159138663 + 102594407 102598976 L1PA6 6164 + 0 6149 10600 236 0 2 42 0 1564 488 0 2 644 0 2 54 0 1 74 0 4 71 8 7 81 0 5 1914 0 1 123 1 0 474 2 1 41 0 1 159 12 13 145 chain 255753 chr7 159138663 + 102600649 102603433 L1PA2 6032 + 3234 6023 15948 1876 0 1 257 0 3 225 0 1 426 chain 30948 chr7 159138663 + 102613656 102614025 MER48 407 + 0 370 82602 260 0 1 109 chain 177267 chr7 159138663 + 102614506 102617487 HERVH48-int 3304 + 191 2717 21226 5 2 0 30 312 0 31 9 1 10 2 1 8 1 0 9 11 6 4 1 0 66 6 2 5 1 0 72 1 0 17 3 0 6 13 7 16 8 9 54 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68 18 12 91 6 1 151 0 2 53 1 2 163 11 14 39 4 1 290 0 16 105 0 1 91 1 0 36 1 3 281 0 1 44 0 1 6 5 44 73 18 1 36 0 8 251 0 1 31 0 4 54 1 0 35 1 0 25 0 243 95 315 6 17 1 0 9 43 29 30 chain 56090 chr7 159138663 + 102696314 102697557 L1PB1 5432 - 5 916 55074 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 19 8 4 1 0 15 1 0 10 0 1 32 2 1 16 2 1 52 2 0 9 5 1 12 5 4 8 1 0 10 27 10 9 3 2 81 6 8 65 13 3 51 0 14 2 298 0 66 3 1 107 0 2 81 0 1 64 7 16 25 chain 5179 chr7 159138663 + 102709425 102709531 SVA_F 1814 + 1045 1279 193237 20 5 2 16 0 139 19 5 2 28 5 0 8 chain 37917 chr7 159138663 + 102736112 102736540 L1PA3long 6157 + 5728 6156 72257 411 0 1 10 1 0 6 chain 2611 chr7 159138663 + 102743192 102743220 L1MB3 1562 + 1527 1555 231535 28 chain 520045 chr7 159138663 + 102746412 102753210 L1PA7 6471 + 19 6470 5157 384 5 0 374 7 5 10 0 1 64 1 2 354 0 4 444 0 1 160 2 4 269 36 5 27 1 0 22 314 0 11 0 4 48 0 1 52 1 0 215 0 1 159 0 1 59 1 0 48 0 3 231 1 0 114 0 4 19 0 1 61 15 0 26 0 1 108 0 1 74 0 4 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6471 + 5853 6468 57360 258 0 1 23 0 2 331 chain 4690 chr7 159138663 + 103490227 103490308 MER58C 217 + 129 206 198644 19 13 9 49 chain 36211 chr7 159138663 + 103490642 103491134 L1PBa1 4058 + 107 591 74614 192 30 25 105 2 0 133 2 1 28 chain 42760 chr7 159138663 + 103491136 103491902 L1PB1 5432 + 4669 5405 65710 124 22 22 156 0 1 20 1 4 44 0 1 5 0 1 5 2 1 45 12 7 9 1 0 22 1 0 10 17 12 11 2 0 43 1 0 8 2 1 16 1 0 44 1 0 15 3 0 7 56 43 26 1 0 19 1 0 9 0 1 4 chain 3186 chr7 159138663 + 103498786 103498826 MIR 256 + 215 255 221192 40 chain 85398 chr7 159138663 + 103512511 103513440 L1PA2 6032 - 2 932 41348 858 0 1 71 chain 249131 chr7 159138663 + 103513440 103552462 L1PA2 6032 + 2653 6030 16305 1870 35645 0 1507 chain 239286 chr7 159138663 + 103522955 103526176 L1PA7 6471 + 3518 6451 16811 11 1 0 41 0 8 235 0 4 102 0 1 359 0 4 518 0 1 183 6 7 629 1 0 273 0 2 179 306 0 142 1 0 234 chain 23222 chr7 159138663 + 103525515 103525797 AluY 311 + 11 294 114581 120 1 2 161 chain 51686 chr7 159138663 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chr7 159138663 + 103759872 103761407 L1PA4 6152 - 312 1857 26131 538 0 4 585 0 6 412 chain 20159 chr7 159138663 + 103768973 103769194 L1PA3long 6157 - 0 220 126649 155 1 0 65 chain 113381 chr7 159138663 + 103798683 103799935 L1PA3long 6157 + 4905 6157 33257 399 1 0 294 0 1 558 chain 29003 chr7 159138663 + 103814286 103814591 AluYa5 310 - 5 310 88971 305 chain 92937 chr7 159138663 + 103818022 103819252 L1PA8 5853 - 0 1246 38675 40 0 4 28 22 21 19 2 1 51 13 11 19 0 2 35 0 1 13 2 0 44 1 0 47 1 2 319 0 4 101 4 7 75 0 2 303 7 12 21 1 2 62 chain 25903 chr7 159138663 + 103821951 103822261 AluY 311 + 0 304 100419 126 5 0 9 1 0 169 chain 547595 chr7 159138663 + 103850184 103856328 L1PA3long 6157 + 6 6147 1753 1395 9 0 10 0 9 435 10 0 215 0 1 1237 0 1 1048 0 4 291 0 1 1494 chain 5609 chr7 159138663 + 103857843 103857996 L1ME1 1623 + 177 327 188986 42 69 66 42 chain 27523 chr7 159138663 + 103874951 103875248 AluYa5 310 + 0 298 94592 131 0 1 166 chain 125735 chr7 159138663 + 103875695 103877076 L1PA4 6152 - 1 1384 29176 859 0 1 32 0 1 490 chain 10168 chr7 159138663 + 103877076 103877191 L1PA4 6152 + 4620 4735 159761 115 chain 315488 chr7 159138663 + 103884856 103888739 L1PA8 5853 - 0 3886 12787 29 1 2 62 1 0 19 2 1 40 0 1 11 8 6 74 10 0 46 1 0 338 0 1 174 0 1 37 12 10 249 1 0 4 0 1 64 2 1 662 0 1 140 0 6 170 4 5 215 0 1 491 1 0 58 0 4 444 0 4 271 0 1 242 chain 41562 chr7 159138663 + 103888739 103889267 L1PA8 5853 + 1343 1867 67001 184 1 0 79 0 2 63 16 8 113 0 3 72 chain 8737 chr7 159138663 + 103889568 103889668 L1P2 5180 + 2159 2259 166991 100 chain 549012 chr7 159138663 + 103916978 103923124 L1PA3long 6157 + 4 6146 1576 454 12 6 2058 0 1 333 0 1 358 1 0 77 0 1 441 1 0 1530 3 0 43 0 1 112 1 3 677 0 1 45 chain 39516 chr7 159138663 + 103943128 103943577 L1PA4 6152 + 5691 6140 70003 201 1 0 109 1 2 137 chain 18206 chr7 159138663 + 103984943 103985269 L1PB3 3668 - 72 368 132320 14 1 0 13 5 1 39 3 1 25 1 0 8 1 0 13 24 4 87 13 12 79 chain 11196 chr7 159138663 + 103990042 103990178 L1PA7 6471 + 6332 6465 155437 127 3 0 6 chain 4360 chr7 159138663 + 103990600 103990776 MER3 215 - 28 210 202445 33 12 0 8 16 32 27 64 66 16 chain 29668 chr7 159138663 + 104005947 104006258 AluYb8 318 + 0 311 85959 311 chain 14424 chr7 159138663 + 104013928 104014122 MER4E 760 - 2 216 143136 62 0 21 47 2 1 83 chain 32541 chr7 159138663 + 104014167 104014576 MER4E1 777 - 379 777 79960 193 12 0 180 0 1 24 chain 247712 chr7 159138663 + 104030637 104033428 L1PA5 6144 - 0 2794 16370 298 0 4 2337 1 0 155 chain 4942 chr7 159138663 + 104065029 104065135 MER20 218 + 51 162 195780 31 3 0 5 11 18 26 9 10 21 chain 13622 chr7 159138663 + 104080483 104080635 L1PA3long 6157 + 6005 6157 145897 152 chain 32570 chr7 159138663 + 104080650 104081015 L1PA5 6144 + 5773 6137 79905 106 1 0 258 chain 27201 chr7 159138663 + 104090866 104091181 L1PA7 6471 + 6155 6470 95593 315 chain 140860 chr7 159138663 + 104097569 104099127 L1PA3long 6157 - 0 1563 26016 252 1 2 28 0 3 53 0 1 1224 chain 26690 chr7 159138663 + 104105888 104106255 THE1C 375 - 0 375 97352 26 1 0 91 0 8 37 20 19 6 0 1 96 0 1 90 chain 21531 chr7 159138663 + 104126072 104126342 L1PA6 6164 - 2 267 122042 157 1 0 10 5 1 97 chain 25292 chr7 159138663 + 104129526 104129799 AluYa5 310 - 7 279 103263 210 1 0 62 chain 4636 chr7 159138663 + 104134419 104134480 MER33 330 + 142 234 199240 44 0 31 17 chain 60899 chr7 159138663 + 104136431 104137118 L1PA4 6152 - 14 699 52386 4 1 0 654 2 1 26 chain 136462 chr7 159138663 + 104147589 104149066 L1PA2 6032 + 4551 6028 26750 1477 chain 5595 chr7 159138663 + 104152172 104152251 L1PB1 5432 + 5346 5422 189134 24 1 0 21 1 0 11 1 0 20 chain 11442 chr7 159138663 + 104156309 104156464 THE1C-int 1605 - 1455 1605 154528 134 7 2 14 chain 25968 chr7 159138663 + 104156467 104156852 THE1C 375 - 2 375 100144 23 1 0 67 7 0 86 33 29 168 chain 12976 chr7 159138663 + 104158314 104158475 L1PA7 6471 + 6311 6469 148325 150 3 0 8 chain 131162 chr7 159138663 + 104160439 104161897 L1P1 4361 - 262 1720 27823 1458 chain 20934 chr7 159138663 + 104161897 104162122 L1PA3long 6157 + 5058 5283 123166 225 chain 67674 chr7 159138663 + 104162122 104162858 L1PA3long 6157 + 5285 6021 49374 736 chain 11154 chr7 159138663 + 104162864 104162993 L1PA3long 6157 + 6028 6157 155617 129 chain 2656 chr7 159138663 + 104165853 104165881 MLT1K 546 - 14 42 230935 28 chain 34308 chr7 159138663 + 104183221 104183653 L1PA8 5853 + 5316 5740 77194 248 1 0 45 2 0 14 1 0 55 2 1 9 1 0 12 2 0 40 chain 51965 chr7 159138663 + 104183662 104184486 L1PA8 5853 + 5145 5853 57640 417 1 0 22 13 12 12 2 0 68 15 13 48 121 12 11 2 1 92 chain 5396 chr7 159138663 + 104184277 104184346 L1PA8 5853 + 5769 5838 191023 69 chain 30376 chr7 159138663 + 104187401 104187717 AluYb8 318 + 0 316 83716 316 chain 24996 chr7 159138663 + 104195749 104196109 THE1B 368 - 0 368 104815 49 26 34 101 1 2 9 1 0 173 chain 551950 chr7 159138663 + 104198123 104204153 L1PA2 6032 - 0 6029 1196 7 1 0 2208 0 1 761 1 0 1944 0 1 854 2 1 252 chain 4770 chr7 159138663 + 104212623 104212699 MADE1 96 - 4 96 197688 33 8 24 35 chain 124346 chr7 159138663 + 104223532 104224915 L1PA4 6152 + 4764 6151 29585 318 0 1 215 0 3 850 chain 506471 chr7 159138663 + 104227574 104233418 L1PA5 6144 - 6 5870 6435 837 0 4 949 0 4 63 0 2 999 0 1 109 1 0 1235 1 0 764 9 0 336 0 17 135 0 3 406 chain 262440 chr7 159138663 + 104233427 104236637 L1P2 5180 - 1968 5176 15562 29 2 0 804 9 5 55 1 0 95 8 16 15 0 2 5 2 0 47 0 1 190 1 0 1155 1 0 6 1 0 224 1 0 48 0 1 267 1 0 10 0 2 35 3 2 47 2 1 146 chain 94843 chr7 159138663 + 104248028 104249088 L1PA4 6152 + 5074 6136 38132 230 0 4 76 3 0 116 0 1 635 chain 26266 chr7 159138663 + 104255977 104256299 L1PA7 6471 - 6 328 98950 139 8 6 127 1 3 47 chain 116411 chr7 159138663 + 104256299 104257641 L1PA7 6471 + 4674 6003 32310 726 0 1 147 15 0 74 0 2 86 1 0 293 chain 3767 chr7 159138663 + 104263140 104263192 L1MB8 1703 - 186 238 210854 4 0 1 4 1 0 43 chain 98218 chr7 159138663 + 104278073 104279944 L1PREC2 3366 - 403 2052 37232 11 4 1 29 70 55 13 3 0 4 1 0 44 1 0 23 33 21 9 2 0 6 1 3 5 1 0 23 1 3 196 0 1 54 13 12 26 0 3 173 7 5 298 13 12 66 304 0 36 27 154 4 0 1 49 7 0 34 1 0 117 9 8 108 3 0 42 chain 39351 chr7 159138663 + 104280566 104281086 L1PA8 5853 - 0 515 70252 93 1 0 19 2 1 39 15 14 8 1 0 9 0 2 58 2 0 46 1 0 226 chain 28456 chr7 159138663 + 104306959 104307271 AluYa5 310 - 2 310 91351 215 1 0 83 3 0 10 chain 7471 chr7 159138663 + 104322769 104322863 MER5A1 166 + 43 140 174341 75 0 3 19 chain 286370 chr7 159138663 + 104328437 104332215 HERVL-int 5654 + 105 4195 14266 105 11 6 371 1 2 93 5 4 19 0 1 102 5 6 19 0 1 13 17 39 268 0 108 94 5 4 292 38 38 560 3 1 718 1 2 814 1 2 96 0 1 48 1 0 34 0 2 26 0 184 8 1 0 9 chain 4755 chr7 159138663 + 104332234 104332288 THE1C-int 1605 + 153 207 197858 54 chain 102360 chr7 159138663 + 104332288 104333829 THE1C-int 1605 + 153 1599 36180 105 0 1 185 86 12 55 1 0 227 7 16 18 67 0 199 6 15 252 0 6 36 5 6 11 11 14 136 1 9 104 9 19 20 chain 25583 chr7 159138663 + 104342324 104342655 L1PA7 6471 - 10 332 101810 37 6 10 62 14 0 113 0 1 99 chain 84158 chr7 159138663 + 104349679 104350611 SVA_B 1603 - 4 1407 41836 6 3 0 523 0 474 400 chain 121657 chr7 159138663 + 104360597 104361993 L1PA6 6164 + 4763 6162 30494 552 2 6 694 1 0 147 chain 530737 chr7 159138663 + 104370199 104376288 L1PA5 6144 - 5 6141 4114 292 0 1 1058 2 0 6 1 4 109 11 32 91 0 1 1625 0 1 351 0 2 352 0 1 510 0 3 510 0 1 460 1 2 576 2 16 132 chain 77272 chr7 159138663 + 104388368 104389335 LTR5_Hs 974 + 0 974 44843 289 0 1 40 0 1 136 0 1 188 1 0 168 0 7 22 20 18 103 chain 350195 chr7 159138663 + 104389348 104393263 HERVK-int 6823 - 2935 6818 11599 2053 1 0 6 7 2 173 0 1 194 1 0 441 1 0 311 1 0 19 1 0 28 2 0 206 1 0 304 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 chain 4316 chr7 159138663 + 104393428 104393476 L1MC2 1988 - 166 214 203010 48 chain 78553 chr7 159138663 + 104397485 104398580 L1PA16 3655 + 2423 3519 44239 4 0 1 209 10 11 18 0 1 8 2 1 51 1 0 176 1 0 8 5 4 7 0 7 62 8 7 202 6 5 85 2 0 124 1 0 105 chain 24419 chr7 159138663 + 104409905 104410203 L1PA7 6471 - 3 296 107969 7 4 0 134 7 6 146 chain 9592 chr7 159138663 + 104410203 104410316 L1PA7 6471 + 6034 6146 162632 103 1 0 9 chain 22544 chr7 159138663 + 104412263 104412564 AluSc 308 - 3 308 117827 33 0 2 107 0 1 31 1 2 44 1 0 26 5 6 53 chain 6339 chr7 159138663 + 104427830 104427907 MLT1A0 366 - 33 110 182479 77 chain 133816 chr7 159138663 + 104469783 104471273 L1PA4 6152 - 5 1494 27259 1118 1 0 371 chain 32545 chr7 159138663 + 104473364 104474722 MLT2A1 477 - 0 477 79953 55 922 32 67 1 0 140 0 1 11 0 4 23 1 2 123 0 4 15 chain 4592 chr7 159138663 + 104473583 104473642 MLT2A1 477 + 317 375 199728 6 1 0 52 chain 5863 chr7 159138663 + 104473881 104473951 MLT2A1 477 + 316 385 186561 7 1 0 62 chain 3253 chr7 159138663 + 104474001 104474037 MLT2A1 477 - 92 128 219956 36 chain 5863 chr7 159138663 + 104474047 104474117 MLT2A1 477 - 92 161 186562 62 1 0 7 chain 11141 chr7 159138663 + 104476216 104476375 L1PA8 5853 - 0 157 155667 83 17 16 10 1 0 48 chain 5900 chr7 159138663 + 104478097 104478191 L1PB1 5432 - 16 104 186188 12 1 0 13 1 0 21 1 0 24 3 1 13 1 0 4 chain 10650 chr7 159138663 + 104490792 104490923 MER39B 650 - 518 650 157607 109 0 1 22 chain 537797 chr7 159138663 + 104504580 104510698 L1PA4 6152 + 6 6151 3184 235 4 1 214 6 30 237 0 17 496 1 0 32 0 1 1908 1 0 1179 0 4 688 13 0 180 1 0 923 chain 5144 chr7 159138663 + 104512404 104512501 Tigger3b 1229 - 597 701 193620 6 1 0 22 17 19 8 0 6 43 chain 112089 chr7 159138663 + 104516476 104517725 L1PA4 6152 + 4889 6143 33640 342 1 2 65 0 4 841 chain 26019 chr7 159138663 + 104520931 104521333 Tigger1 2417 + 1103 1480 99951 11 0 2 176 6 0 12 16 0 59 19 14 59 2 0 37 0 2 5 chain 26074 chr7 159138663 + 104551437 104551740 AluY 311 + 0 299 99729 126 6 0 138 0 2 33 chain 16002 chr7 159138663 + 104553962 104554180 THE1B 368 - 0 216 138341 65 0 1 8 1 0 113 11 9 20 chain 12205 chr7 159138663 + 104568943 104569159 MLT1B 390 + 197 378 151404 29 19 9 21 25 0 122 chain 3713 chr7 159138663 + 104576481 104576526 MER39B 650 - 600 645 211746 45 chain 105322 chr7 159138663 + 104580423 104581877 LTR12C 1709 + 1 1709 35419 264 0 2 32 1 2 68 0 1 279 0 280 68 0 1 73 0 47 100 17 10 311 2 1 32 0 7 6 0 23 38 100 0 63 chain 5746 chr7 159138663 + 104581714 104581781 LTR12C 1709 + 1515 1581 142376 43 1 0 23 chain 60450 chr7 159138663 + 104599381 104600485 L1PA8 5853 + 5080 5849 52608 163 0 3 141 312 0 77 28 8 130 15 13 64 1 0 12 6 5 44 2 1 19 1 0 89 chain 28975 chr7 159138663 + 104683674 104683982 AluYa5 310 - 2 310 89111 308 chain 22607 chr7 159138663 + 104691654 104691920 AluSp 311 - 34 300 117558 266 chain 4944 chr7 159138663 + 104699604 104699665 Tigger7 736 + 495 556 195762 61 chain 89630 chr7 159138663 + 104789086 104790112 LTR5A 1029 + 0 1029 39771 13 0 4 131 1 0 881 chain 6214 chr7 159138663 + 104801682 104801756 MER2 342 - 132 206 183453 74 chain 21528 chr7 159138663 + 104803959 104804245 AluSp 311 + 0 269 122051 118 21 4 147 chain 46108 chr7 159138663 + 104805824 104806493 LTR12 884 + 0 869 61937 24 1 0 84 0 1 22 0 91 75 0 4 40 39 0 34 29 39 266 0 134 55 chain 2222 chr7 159138663 + 104806070 104806109 LTR12 884 + 209 250 168352 13 1 3 25 chain 3241 chr7 159138663 + 104825127 104825185 L1M7 962 - 260 317 220206 28 9 8 21 chain 111274 chr7 159138663 + 104832523 104834163 L1PB1 5432 - 8 1637 33870 6 1 0 14 1 0 13 1 0 21 1 0 24 5 3 12 1 0 4 3 1 18 16 6 6 3 0 13 7 6 41 1 0 10 2 0 5 2 1 44 2 0 9 2 0 8 49 56 143 1 0 20 0 1 235 5 6 75 1 2 8 0 4 164 6 0 8 1 7 66 6 5 140 8 16 408 chain 27819 chr7 159138663 + 104851796 104852200 MSTA 426 - 6 426 93634 179 30 26 32 1 0 46 8 29 108 chain 5596 chr7 159138663 + 104854487 104854631 MER3 215 - 56 210 189121 36 2 0 5 15 0 7 34 61 45 chain 22395 chr7 159138663 + 104872631 104872929 AluSp 311 + 0 306 118510 47 5 11 49 1 2 165 7 8 24 chain 12363 chr7 159138663 + 104875358 104875554 MER30 238 + 0 227 150786 13 2 13 67 15 38 59 3 0 37 chain 213416 chr7 159138663 + 104898975 104901480 L1PA6 6164 + 3646 6162 18258 78 10 0 6 0 10 142 2 0 476 0 4 110 0 1 48 2 1 121 2 0 669 0 4 831 0 7 8 chain 29728 chr7 159138663 + 104931203 104931516 AluYb8 318 + 0 313 85729 313 chain 66682 chr7 159138663 + 104941022 104943769 L1PA6 6164 + 5215 6013 49795 100 1 0 216 2 1 251 1947 0 230 chain 12843 chr7 159138663 + 104943770 104943917 L1PA6 6164 + 6015 6162 148878 147 chain 8207 chr7 159138663 + 104961166 104961284 MER85 139 - 0 132 169913 23 2 0 6 1 14 33 0 3 53 chain 22991 chr7 159138663 + 104970508 104970788 AluY 311 + 1 287 115664 47 1 4 136 0 3 96 chain 2784 chr7 159138663 + 104999156 104999186 Tigger2 2703 - 223 253 228965 30 chain 82654 chr7 159138663 + 105000252 105001221 L1P2 5180 - 2452 3434 42484 344 2 0 242 1 6 94 0 6 182 0 4 104 chain 30620 chr7 159138663 + 105001224 105001614 L1P1 4361 + 3933 4328 83170 167 3 1 47 1 0 141 6 2 7 0 12 18 chain 57505 chr7 159138663 + 105002977 105003643 L1PA5 6144 + 5467 6143 54236 91 0 1 260 0 5 95 0 4 220 chain 83157 chr7 159138663 + 105003661 105004637 L1PA6 6164 + 5187 6161 42270 24 0 4 473 8 5 23 3 0 445 chain 24285 chr7 159138663 + 105036372 105036660 AluSp 311 - 22 310 108738 288 chain 30305 chr7 159138663 + 105046161 105046479 AluYb8 318 - 0 318 83897 318 chain 156801 chr7 159138663 + 105050468 105052241 SVA_D 2077 - 5 2075 23758 333 0 10 291 1 98 120 49 0 117 0 185 27 0 40 166 0 14 669 chain 2847 chr7 159138663 + 105051216 105051262 SVA_D 2077 - 684 731 121542 4 0 1 42 chain 8387 chr7 159138663 + 105060358 105060458 7SLRNA 320 - 36 136 168921 100 chain 8329 chr7 159138663 + 105064497 105064601 Tigger1 2417 - 565 669 169226 104 chain 16340 chr7 159138663 + 105077915 105078116 THE1C 375 + 154 356 137369 115 0 1 86 chain 23857 chr7 159138663 + 105099018 105099299 AluYc3 301 - 11 293 111144 175 1 2 105 chain 10314 chr7 159138663 + 105121847 105121975 MER85 139 - 0 139 159074 40 0 10 79 0 1 9 chain 28692 chr7 159138663 + 105132947 105133253 AluYa5 310 - 6 310 90356 211 2 0 93 chain 10664 chr7 159138663 + 105155086 105155913 LTR24B 570 + 15 570 157549 31 2 0 42 0 3 9 608 299 12 6 0 7 29 71 81 chain 10361 chr7 159138663 + 105215583 105215732 THE1B 368 - 204 368 158864 90 15 30 44 chain 72683 chr7 159138663 + 105224270 105225224 MER11B 1079 + 0 1057 47181 55 1 95 169 0 1 154 0 3 83 18 14 98 2 1 96 2 4 106 0 1 117 0 6 27 0 1 26 chain 8313 chr7 159138663 + 105243742 105243858 MER50 708 + 561 683 169311 73 10 16 33 chain 21932 chr7 159138663 + 105285971 105286254 AluY 311 + 10 277 120488 118 16 0 149 chain 26095 chr7 159138663 + 105330452 105330750 AluSp 311 - 13 310 99644 170 1 0 127 chain 76180 chr7 159138663 + 105337268 105338317 MER11C 1089 - 26 1089 45376 25 0 1 108 10 9 56 0 1 125 1 2 37 1 0 4 1 5 112 50 47 145 1 0 65 0 4 54 7 16 247 chain 23400 chr7 159138663 + 105414799 105415097 AluSz6 309 - 11 309 113646 165 1 0 111 1 2 20 chain 23621 chr7 159138663 + 105459343 105459625 L1PA6 6164 - 2 293 112464 8 0 7 41 0 2 233 chain 9219 chr7 159138663 + 105496196 105496318 MER2 342 + 91 212 164455 23 2 1 97 chain 6934 chr7 159138663 + 105500000 105500085 Tigger3c 601 + 386 468 177943 14 3 0 68 chain 23806 chr7 159138663 + 105522656 105522952 THE1A 353 + 0 294 111441 109 2 1 92 1 0 92 chain 28567 chr7 159138663 + 105524972 105525271 AluYb8 318 - 19 318 90884 299 chain 5117 chr7 159138663 + 105540380 105540471 L1PB3 3668 - 100 186 193891 24 1 0 15 3 1 24 6 4 18 chain 6086 chr7 159138663 + 105541453 105541563 L1MC1 2226 - 835 947 184529 18 1 0 15 19 20 5 0 2 52 chain 14651 chr7 159138663 + 105561533 105561693 L1PA4 6152 - 345 505 142420 160 chain 29870 chr7 159138663 + 105561698 105562031 L1PA4 6152 + 5806 6139 85208 333 chain 9103 chr7 159138663 + 105564559 105564684 MER30 238 + 0 145 165056 106 5 25 14 chain 4841 chr7 159138663 + 105566278 105566340 L1MC1 2226 - 179 239 196870 55 2 0 5 chain 16516 chr7 159138663 + 105577021 105577225 AluSp 311 + 98 294 136870 189 8 0 7 chain 44336 chr7 159138663 + 105578266 105578812 MER41A 554 + 0 547 63778 349 1 2 196 chain 212799 chr7 159138663 + 105589147 105591496 L1PA5 6144 - 1 2350 18305 251 2 1 255 0 1 1841 chain 3358 chr7 159138663 + 105595935 105595973 LTR12C 1709 - 872 910 217900 38 chain 10644 chr7 159138663 + 105596029 105596170 LTR12C 1709 - 597 781 157631 36 0 2 49 1 42 55 chain 5004 chr7 159138663 + 105597346 105597411 MADE1 96 - 0 96 195098 18 0 31 47 chain 16809 chr7 159138663 + 105599038 105599281 Tigger3b 1229 - 14 267 136092 111 19 19 82 0 10 31 chain 97626 chr7 159138663 + 105607402 105608516 L1PA5 6144 - 0 1114 37389 253 1 0 255 0 1 605 chain 28350 chr7 159138663 + 105609560 105609866 AluYf4 310 + 0 303 91765 132 3 0 171 chain 23119 chr7 159138663 + 105611334 105611603 AluY 311 + 29 299 115041 105 0 1 164 chain 5731 chr7 159138663 + 105620881 105620942 L1PA4 6152 - 11 72 187825 61 chain 26700 chr7 159138663 + 105646372 105646728 THE1B 368 - 1 368 97323 74 1 0 98 2 0 21 1 0 109 6 21 44 chain 124089 chr7 159138663 + 105646738 105648303 THE1B-int 1605 - 11 1605 29670 224 0 1 334 13 0 10 6 19 45 1 2 502 2 27 394 0 2 34 chain 27905 chr7 159138663 + 105648303 105648657 THE1B 368 - 0 368 93346 196 1 0 114 1 16 42 chain 30803 chr7 159138663 + 105702881 105703307 MER51A 677 - 16 677 82856 145 7 6 120 7 245 10 2 0 135 chain 54258 chr7 159138663 + 105718977 105719745 MER4E 760 + 0 760 56195 24 3 0 127 49 52 20 3 0 16 1 0 22 0 1 8 4 0 93 1 3 19 0 1 60 1 0 83 1 0 4 7 5 222 chain 6000 chr7 159138663 + 105744019 105744163 MER33 330 + 90 242 185240 38 53 61 53 chain 25383 chr7 159138663 + 105759320 105759608 L1PA5 6144 - 0 288 102765 288 chain 44104 chr7 159138663 + 105770483 105771011 MER41A 554 + 16 554 64080 190 0 11 102 1 0 235 chain 7580 chr7 159138663 + 105807140 105807228 L1PA5 6144 + 6056 6144 173666 88 chain 26655 chr7 159138663 + 105841130 105841412 AluYg6 310 + 26 308 97471 282 chain 3456 chr7 159138663 + 105847079 105847120 ORSL-2b 485 - 282 323 216082 41 chain 531747 chr7 159138663 + 105849176 105856506 L1PA5 6144 + 3 6134 3996 201 1 0 525 4 3 343 1 0 79 0 3 276 0 1 389 1243 0 116 1 0 36 0 4 467 3 1 553 1 0 206 0 1 245 0 1 229 1 0 260 0 2 40 0 3 56 3 12 102 0 1 400 0 1 201 0 22 515 0 4 833 chain 73845 chr7 159138663 + 105851043 105851889 L1PA3long 6157 - 0 808 46594 182 38 0 626 chain 30630 chr7 159138663 + 105851889 105852230 L1PA3long 6157 + 4987 5332 83158 317 0 4 24 chain 138102 chr7 159138663 + 105868715 105871081 L1PA14 3548 - 63 2108 26470 20 1 0 10 6 0 7 10 12 15 8 7 12 5 4 5 1 0 13 5 3 36 14 9 12 6 7 55 0 1 36 1 0 84 1 0 6 2 0 17 5 1 108 2 0 5 2 0 47 2 0 14 3 1 26 6 0 223 2 1 152 1 0 7 308 0 11 1 2 227 2 1 41 19 6 61 0 4 63 17 23 75 11 14 201 1 0 15 0 4 25 0 2 82 0 18 33 1 2 179 chain 140759 chr7 159138663 + 105885804 105887369 L1P1 4361 - 33 1596 26030 23 1 0 155 1 0 1385 chain 11516 chr7 159138663 + 105904867 105905064 Tigger4a 237 - 22 237 154234 20 15 16 72 13 0 28 0 15 34 0 15 15 chain 29170 chr7 159138663 + 105908006 105908315 AluYa5 310 + 1 310 88197 309 chain 4298 chr7 159138663 + 105910123 105910191 MER5C1 258 - 118 188 203254 29 3 5 36 chain 164675 chr7 159138663 + 105937771 105939588 L1PA3long 6157 + 4320 6147 22709 676 0 10 1141 chain 333956 chr7 159138663 + 105940939 105945394 L1P3 4156 - 17 4156 12055 24 2 1 9 2 0 73 0 2 33 1 0 426 0 4 80 1 0 4 0 1 584 2 1 90 316 0 169 16 17 784 8 10 280 0 1 199 2 1 705 6 26 212 20 0 82 2 1 68 2 1 94 6 4 153 chain 5465 chr7 159138663 + 105960520 105960592 MER30 238 - 35 104 190358 5 3 0 64 chain 319141 chr7 159138663 + 105962395 105965973 L1PA3long 6157 + 2574 6156 12631 2413 0 2 394 0 1 11 0 1 760 chain 25986 chr7 159138663 + 105972850 105973240 MER51B 395 + 0 395 100071 165 2 3 60 28 27 16 0 1 15 1 0 18 0 1 27 1 5 57 chain 24790 chr7 159138663 + 105980674 105981030 THE1B 368 - 0 368 105944 68 2 0 126 1 0 92 24 39 43 chain 114810 chr7 159138663 + 105981040 105982614 THE1B-int 1605 - 11 1605 32842 195 4 5 182 1 2 12 1 0 261 10 14 84 46 32 275 12 14 62 1 26 413 0 2 15 chain 13252 chr7 159138663 + 105983062 105983328 MER51-int 1546 + 1302 1542 147281 104 86 60 76 chain 28294 chr7 159138663 + 105983345 105983736 MER51B 395 + 5 395 91968 222 31 30 138 chain 19590 chr7 159138663 + 105993717 105994068 L1PB3 3668 - 102 433 128408 37 3 1 14 4 3 8 1 0 5 2 0 16 21 5 83 9 8 37 6 10 48 1 0 56 chain 384157 chr7 159138663 + 106000317 106005094 L1PA7 6471 + 1659 6465 10639 341 1 2 152 6 11 282 0 1 84 26 0 100 7 0 58 0 1 367 2 0 47 0 8 7 6 12 85 16 20 6 4 0 107 0 1 193 0 4 478 0 2 101 3 4 535 0 4 199 1 17 267 3 0 296 0 8 163 2 0 226 0 1 105 1 12 336 1 0 163 chain 8078 chr7 159138663 + 106038291 106038380 L1PA4 6152 - 11 100 170599 89 chain 4608 chr7 159138663 + 106045857 106045915 Tigger1 2417 - 1057 1115 199534 58 chain 326404 chr7 159138663 + 106076930 106080611 L1PA5 6144 - 15 3701 12327 830 0 5 1133 0 1 651 2 0 916 0 1 149 chain 127844 chr7 159138663 + 106080613 106082134 L1P1 4361 + 778 2307 28608 89 6 9 534 3 8 889 chain 3845 chr7 159138663 + 106082406 106082531 MER5A1 166 + 53 162 209719 26 18 19 22 40 23 19 chain 12575 chr7 159138663 + 106085592 106085909 L1MA3 4352 - 0 287 149934 22 6 2 11 1 0 24 16 14 21 6 4 31 1 0 44 21 24 42 48 25 23 chain 144185 chr7 159138663 + 106092293 106094502 MER4-int 2692 - 529 2691 25445 14 33 0 12 7 5 17 5 6 39 21 2 97 7 9 17 2 0 71 9 10 354 5 0 184 2 0 14 2 1 82 1 2 95 15 14 38 11 14 147 0 1 14 45 57 115 19 18 23 2 0 99 3 0 29 1 0 73 0 13 104 9 10 244 1 0 4 5 0 7 1 0 72 2 0 25 1 0 10 chain 81822 chr7 159138663 + 106096492 106097955 MER41-int 2638 - 2 1143 42833 57 3 4 63 8 6 6 0 2 45 12 16 67 1 3 16 1 0 113 16 8 135 2 0 218 3 1 89 0 1 96 7 8 12 1 0 125 317 0 50 chain 20745 chr7 159138663 + 106124531 106124771 AluSc 308 + 17 257 124802 240 chain 32283 chr7 159138663 + 106131748 106132209 L1P3 4156 + 0 452 80393 31 0 13 107 21 0 100 1 0 71 1 0 44 9 10 16 9 8 9 0 1 42 chain 451544 chr7 159138663 + 106133425 106138938 L1PA7 6471 + 406 6466 8719 531 42 23 353 0 7 708 0 1 66 0 589 78 11 0 722 27 16 598 0 1 233 0 1 103 21 4 959 0 1 110 0 5 951 chain 21467 chr7 159138663 + 106146285 106146526 L1PA4 6152 + 5910 6151 122266 241 chain 113860 chr7 159138663 + 106166905 106168197 L1PA5 6144 - 12 1309 33131 834 1 6 457 chain 28842 chr7 159138663 + 106168207 106168627 LTR7B 505 - 10 505 89705 41 14 13 79 1 0 80 0 2 28 15 77 62 0 10 10 0 3 90 chain 231812 chr7 159138663 + 106170357 106173636 HERVH-int 3825 - 0 3522 17212 245 7 3 10 2 1 268 1 0 38 18 17 13 0 2 133 0 3 77 1 0 215 11 0 520 0 3 182 18 23 74 0 2 11 7 42 163 0 1 172 1 0 4 67 68 19 22 23 61 9 0 13 1 0 193 15 0 95 0 3 333 5 273 6 0 1 17 0 2 5 82 45 26 22 21 67 1 0 29 chain 28435 chr7 159138663 + 106173655 106174104 LTR7B 505 - 10 505 91440 41 14 13 32 0 1 4 0 2 40 1 0 81 11 13 16 37 68 58 1 0 8 0 10 15 0 3 90 chain 11145 chr7 159138663 + 106174603 106174749 L1P1 4361 - 20 164 155650 12 2 1 23 1 0 108 chain 27645 chr7 159138663 + 106184465 106184767 AluYk4 311 - 0 302 94226 302 chain 478187 chr7 159138663 + 106194987 106201024 L1PA6 6164 - 8 6164 7794 6 0 6 189 0 3 43 1 2 24 0 3 323 0 3 229 0 9 9 2 1 138 0 5 566 0 35 514 0 1 20 0 1 177 0 2 142 0 3 169 3 2 176 7 11 48 9 14 14 5 8 70 0 1 409 0 5 192 5 9 249 14 1 590 0 6 12 0 1 62 0 3 11 1 0 13 0 1 159 15 14 59 0 7 148 1 0 156 6 10 162 5 9 33 0 10 54 0 17 123 0 3 94 9 8 110 8 0 252 7 3 194 chain 35135 chr7 159138663 + 106207798 106208279 LTR7B 505 + 0 497 76014 95 0 31 81 34 0 24 0 21 78 0 1 110 0 2 5 9 6 26 2 0 17 chain 32063 chr7 159138663 + 106209955 106210382 LTR10F 562 + 0 554 80746 24 4 13 39 0 5 35 0 115 67 1 0 81 0 1 13 3 1 160 chain 13481 chr7 159138663 + 106221697 106221982 L1PA15 4387 + 4087 4355 146411 17 1 0 26 30 29 26 1 0 19 4 0 12 6 5 46 6 3 43 2 0 13 10 6 23 chain 21080 chr7 159138663 + 106222644 106222902 MER4A1 472 + 200 458 123620 258 chain 3025 chr7 159138663 + 106239380 106239413 MLT1J 494 - 366 399 224470 33 chain 5344 chr7 159138663 + 106274004 106274116 MLT1C 463 + 351 463 191603 24 35 34 7 0 1 46 chain 33664 chr7 159138663 + 106278843 106279282 MLT2A1 477 - 0 477 78151 49 4 44 214 4 1 162 0 1 6 chain 3895 chr7 159138663 + 106310688 106310757 MLT1D 503 - 31 97 208934 39 13 10 17 chain 507011 chr7 159138663 + 106312208 106319029 L1PA6 6164 + 0 6152 6396 566 2 1 483 1 0 46 2 40 232 8 1 210 3 0 46 0 1 623 0 14 487 1 0 439 0 1 213 2 1 115 4 5 58 733 0 113 1 2 102 15 16 557 0 1 440 0 1 42 0 1 156 0 14 337 0 1 537 0 4 98 4 3 145 chain 60140 chr7 159138663 + 106315757 106316457 L1PA5 6144 + 5436 6137 52754 374 0 1 326 chain 535232 chr7 159138663 + 106324836 106330957 L1PA5 6144 - 4 6144 3562 138 0 1 115 0 1 192 0 1 644 0 1 353 0 1 1039 6 13 2194 0 5 9 0 1 543 0 1 888 chain 523859 chr7 159138663 + 106349854 106356020 L1PA6 6164 + 0 6162 4782 165 6 5 339 2 1 57 1 0 201 0 1 56 6 5 424 1 0 218 0 1 429 0 1 310 0 2 119 11 7 50 0 1 797 0 1 1075 1 0 7 0 1 1220 0 1 618 3 0 50 chain 317643 chr7 159138663 + 106364596 106368563 L1PA5 6144 + 2519 6138 12691 760 1 0 2077 298 1 22 51 0 593 1 2 164 chain 24185 chr7 159138663 + 106367437 106367725 AluYf4 310 + 17 304 109299 192 1 0 95 chain 8706 chr7 159138663 + 106377402 106377523 MER50B 698 - 575 685 167164 53 11 0 57 chain 26476 chr7 159138663 + 106378190 106378491 L1PA4 6152 + 5846 6152 98141 295 0 5 6 chain 29268 chr7 159138663 + 106387729 106388129 MER57B1 401 - 0 401 87702 38 11 12 13 5 0 191 0 4 74 0 1 68 chain 35169 chr7 159138663 + 106396025 106396494 MER4D1 891 - 430 891 75953 32 1 0 13 1 0 18 7 0 84 1 2 4 1 0 88 0 2 187 1 0 31 chain 60704 chr7 159138663 + 106403093 106403799 L1PA7 6471 + 5757 6464 52471 563 0 1 143 chain 17843 chr7 159138663 + 106412667 106413005 L1PB1 5432 + 5114 5420 133264 24 1 0 9 1 0 11 4 0 9 2 0 53 2 1 16 1 0 44 1 0 15 4 1 14 9 0 16 24 19 24 1 0 21 2 0 13 1 0 16 chain 40388 chr7 159138663 + 106436541 106437373 MER41A 554 - 0 534 68758 116 315 14 67 0 3 280 1 0 4 0 1 49 chain 121892 chr7 159138663 + 106437400 106439055 MER41-int 2638 - 2 1678 30416 155 8 11 16 2 3 78 8 15 217 0 1 11 0 10 56 0 3 149 2 0 36 2 0 20 1 0 160 6 5 13 0 3 6 2 0 149 0 1 144 1 0 46 2 1 27 0 1 86 1 0 115 0 3 63 1 0 72 chain 42600 chr7 159138663 + 106441719 106442262 MER41A 554 - 0 554 65900 108 0 10 199 8 9 228 chain 13903 chr7 159138663 + 106485127 106485316 LTR8 732 - 538 723 144904 5 2 0 53 1 0 123 1 0 4 chain 18654 chr7 159138663 + 106492075 106492459 THE1B 368 - 0 368 131076 56 7 6 56 89 73 42 23 24 111 chain 23301 chr7 159138663 + 106515516 106515820 AluSx3 311 + 3 298 114196 120 1 0 7 2 0 75 9 3 90 chain 29735 chr7 159138663 + 106516343 106516658 AluYb9 318 - 3 318 85713 315 chain 32146 chr7 159138663 + 106525156 106525574 Charlie3 2679 - 2235 2660 80618 81 5 11 276 0 2 40 1 0 15 chain 10973 chr7 159138663 + 106527346 106527520 MER30 238 - 0 201 156302 45 0 3 29 0 8 15 0 27 13 17 6 55 chain 188697 chr7 159138663 + 106538798 106541357 L1PA14 3548 - 112 3458 20171 22 1 0 16 1 0 11 14 11 35 15 10 110 1 0 84 1 0 6 2 0 5 16 12 77 0 6 26 2 0 4 2 0 48 2 0 14 3 1 74 0 8 167 1 0 78 0 2 9 0 1 64 1 0 389 0 1 117 0 4 54 1 3 72 0 3 89 1 0 154 4 10 83 25 816 119 2 4 15 1 0 93 1 0 41 0 2 167 2 0 31 2 0 30 2 1 20 1 0 69 4 0 58 chain 488028 chr7 159138663 + 106559261 106565400 L1PA6 6164 + 8 6162 7442 130 21 16 8 0 5 282 8 0 120 1 0 49 0 1 168 0 17 129 1 0 153 0 3 157 0 1 366 219 1 14 0 218 478 4 1 696 1 2 152 10 10 4 0 1 50 0 4 31 1 0 5 5 3 247 2 0 26 1 0 2588 0 6 12 chain 34463 chr7 159138663 + 106569878 106570267 L1PA4 6152 - 0 391 76970 6 0 2 383 chain 23380 chr7 159138663 + 106577378 106577655 AluSc 308 - 15 293 113758 97 0 1 180 chain 121729 chr7 159138663 + 106577689 106579081 L1PA5 6144 + 4742 6131 30468 552 1 0 478 0 1 50 3 0 308 chain 24897 chr7 159138663 + 106594168 106594467 AluSp 311 + 11 308 105361 121 2 0 176 chain 51748 chr7 159138663 + 106607862 106608451 LTR10C 591 + 0 591 57790 508 0 2 81 chain 37758 chr7 159138663 + 106630002 106630471 LTR15 485 - 9 485 72479 19 0 1 14 2 0 5 1 0 156 0 4 102 0 2 22 0 2 45 0 1 103 chain 4100 chr7 159138663 + 106656718 106656768 MER58C 217 - 16 67 205952 17 0 1 33 chain 112172 chr7 159138663 + 106681947 106683326 LTR12C 1709 - 0 1709 33619 84 2 1 145 0 7 244 0 4 79 0 1 25 5 3 4 1 0 85 0 278 280 1 0 4 0 1 64 1 2 17 0 43 338 chain 168177 chr7 159138663 + 106695267 106697169 L1PA4 6152 - 9 1912 22264 130 0 7 9 8 1 820 2 0 755 0 1 86 0 2 92 chain 522209 chr7 159138663 + 106733958 106740073 L1PA5 6144 - 0 6140 4936 769 1 3 56 0 3 531 0 2 435 1 5 1164 6 0 18 1 0 212 0 3 54 2 0 469 0 3 100 5 4 249 2 1 579 0 1 312 9 0 161 0 1 840 10 36 129 chain 4967 chr7 159138663 + 106751782 106752043 L1M1 2793 + 495 695 195506 4 1 0 10 1 0 10 9 6 9 1 0 6 1 0 14 2 0 8 3 0 8 11 9 11 118 71 34 chain 23742 chr7 159138663 + 106766556 106766888 AluY 311 + 0 305 111819 119 14 0 14 15 2 170 chain 3901 chr7 159138663 + 106769031 106769126 LTR40c 466 - 357 454 208833 23 36 38 36 chain 43530 chr7 159138663 + 106769996 106770532 MER41A 554 - 0 541 64774 79 1 6 263 11 1 8 0 10 174 chain 17166 chr7 159138663 + 106787547 106787764 AluYc 301 + 61 279 135119 59 0 2 95 13 12 50 chain 40801 chr7 159138663 + 106796164 106796711 L1PA8 5853 + 5307 5853 68172 236 0 1 20 1 0 45 2 0 73 1 0 6 1 0 52 2 1 12 5 8 76 4 5 11 chain 24255 chr7 159138663 + 106870285 106870586 AluSc5 308 - 0 299 108914 244 3 1 54 chain 175122 chr7 159138663 + 106883994 106886866 L1PA14 3548 + 802 3456 21445 185 0 2 196 1 0 25 308 0 109 7 8 61 0 3 46 0 1 5 11 11 49 1 0 7 1 5 30 8 14 49 38 54 253 2 0 78 0 88 456 1 0 87 3 0 6 0 3 45 10 10 223 7 6 21 3 1 14 2 0 47 2 0 5 2 0 104 13 9 13 9 6 82 1 0 79 0 1 29 20 15 34 26 22 14 1 0 43 chain 35645 chr7 159138663 + 106912558 106913006 MER4A1 472 + 0 472 75346 230 1 22 142 7 10 68 chain 29869 chr7 159138663 + 106918718 106919065 L1PA7 6471 - 1 349 85215 148 0 1 199 chain 30296 chr7 159138663 + 106951819 106952137 AluYb8 318 - 0 318 83928 318 chain 16306 chr7 159138663 + 106987149 106987341 L1PA5 6144 - 0 192 137465 192 chain 119488 chr7 159138663 + 106991577 106992914 L1PA4 6152 + 4813 6151 31223 488 1 0 390 0 2 283 0 9 96 9 0 70 chain 2822 chr7 159138663 + 107000159 107000396 MER52A 1651 + 798 993 228431 15 69 0 21 110 137 22 chain 232954 chr7 159138663 + 107018356 107021466 L1P2 5180 + 635 3880 17144 106 21 0 46 0 15 242 0 1 5 2 1 249 1 0 140 1 3 217 0 3 5 5 4 647 9 0 252 1 5 32 0 1 171 6 10 57 10 106 58 7 20 151 3 1 30 1 0 19 0 4 282 0 4 290 9 33 35 chain 214665 chr7 159138663 + 107021483 107024764 MER61-int 3695 + 579 3695 18187 59 0 96 45 0 3 14 5 4 45 13 18 199 0 1 60 0 8 34 0 3 13 1 2 5 0 4 72 0 3 128 16 14 94 4 5 67 5 9 39 0 5 79 0 1 380 323 3 30 7 11 292 0 1 164 1 0 24 1 0 141 0 4 10 1 0 95 1 0 64 7 16 195 15 14 12 0 1 92 15 26 71 2 1 217 0 1 25 1 0 45 15 14 38 chain 143945 chr7 159138663 + 107028122 107030323 HERVK22-int 3844 + 1401 3466 25486 494 10 18 170 0 3 28 0 1 55 0 1 480 13 17 30 2 1 280 94 0 69 1 0 19 3 1 52 1 0 4 1 0 18 8 7 28 1 0 21 2 0 39 17 12 43 2 0 14 173 131 29 chain 14590 chr7 159138663 + 107043833 107044030 L1PA7 6471 - 1 196 142626 12 2 0 76 1 0 66 3 4 37 chain 17654 chr7 159138663 + 107089522 107089800 L1PA8 5853 + 5595 5853 133829 13 2 0 70 2 1 11 1 0 49 6 5 16 1 0 42 13 0 5 2 1 45 chain 15374 chr7 159138663 + 107134805 107135138 Tigger3c 601 + 1 587 140280 26 11 27 46 43 250 20 10 14 44 0 25 77 27 28 29 chain 542277 chr7 159138663 + 107148379 107154503 L1PA4 6152 + 42 6151 2460 273 2 1 264 1 0 254 17 0 600 1 0 435 1 0 331 0 2 560 0 4 3235 2 0 6 0 2 142 chain 410679 chr7 159138663 + 107157007 107163039 L1PA8 5853 + 387 5853 9782 208 7 11 40 0 4 365 0 13 126 3 2 302 2 1 80 304 0 76 7 0 268 4 3 437 0 1 119 0 1 48 0 8 76 0 1 34 1 0 323 4 8 19 0 3 82 1 0 168 0 1 376 24 23 293 0 2 591 4 5 267 6 6 221 14 16 69 3 5 70 11 17 168 0 1 137 11 23 59 1 0 44 6 4 67 18 16 6 0 1 37 4 3 9 309 0 9 2 1 92 chain 377644 chr7 159138663 + 107173431 107178193 L1PA7 6471 + 1112 6469 10828 152 5 15 37 1 0 233 7 6 41 0 3 34 0 2 885 0 2 119 7 3 23 6 6 131 1 2 649 0 5 43 2 0 44 5 9 24 0 2 222 5 9 65 4 1 127 0 4 230 0 4 96 1 34 295 0 8 455 17 3 156 2 555 42 9 19 34 0 1 25 26 0 295 0 2 195 2 0 10 chain 69634 chr7 159138663 + 107267597 107268620 L1MA2 4263 - 150 1162 48555 8 1 0 42 16 9 89 11 9 32 0 3 8 4 0 106 14 10 31 1 5 98 1 0 67 16 12 17 1 0 31 0 4 68 2 3 255 0 1 104 chain 13038 chr7 159138663 + 107277834 107278067 LTR24B 570 + 0 237 148089 38 19 20 20 25 23 83 0 5 48 chain 550648 chr7 159138663 + 107286777 107292922 L1PA4 6152 - 1 6140 1354 147 0 1 475 0 2 2762 0 1 4 1 0 893 1 0 81 0 2 61 2 0 1146 1 0 116 6 0 105 5 2 37 0 2 302 chain 5517 chr7 159138663 + 107299966 107300061 MER20 218 - 72 171 189868 45 20 24 30 chain 4732 chr7 159138663 + 107312771 107312853 MADE1 96 + 0 96 198137 30 8 6 12 2 18 30 chain 10950 chr7 159138663 + 107322653 107322773 L1PA4 6152 + 6021 6141 156397 120 chain 21567 chr7 159138663 + 107370404 107370680 AluSc8 310 + 11 292 121895 121 0 3 136 1 3 18 chain 462325 chr7 159138663 + 107373272 107379427 HERVL-int 5654 + 0 5645 8309 19 2 0 4 0 1 38 0 1 6 1 0 228 4 0 351 2 1 100 0 3 156 0 2 158 0 1 21 0 2 31 0 1 716 0 11 164 32 16 437 0 5 686 1 0 670 519 0 225 4 0 523 11 9 34 0 6 273 1 4 321 0 1 260 0 3 157 chain 43938 chr7 159138663 + 107377105 107377618 MER9a2 513 - 0 513 64281 513 chain 31462 chr7 159138663 + 107379436 107379907 MLT2A1 477 + 0 477 81716 28 0 5 135 12 7 112 0 2 87 54 58 43 chain 3239 chr7 159138663 + 107419078 107419116 MADE1 96 - 58 96 220247 38 chain 38187 chr7 159138663 + 107432626 107433117 MER1A 529 - 0 492 71853 58 12 13 421 chain 24739 chr7 159138663 + 107470075 107470335 AluYa5 310 + 38 298 106226 260 chain 23451 chr7 159138663 + 107472429 107472846 MSTA 426 - 18 425 113377 38 10 0 5 3 0 113 62 59 24 20 26 142 chain 13546 chr7 159138663 + 107479093 107479281 MER30 238 + 26 228 146184 81 4 21 71 4 1 28 chain 160699 chr7 159138663 + 107480933 107482756 L1PA5 6144 + 4312 6129 23235 220 10 1 405 0 1 358 0 4 139 1 0 445 1 0 244 chain 134272 chr7 159138663 + 107487975 107489498 SVA_C 1631 + 10 1623 27157 6 3 0 14 1 0 7 0 4 6 1 0 5 0 2 783 0 88 29 1 0 47 1 3 619 chain 30344 chr7 159138663 + 107523945 107524263 AluYb9 318 + 0 318 83797 318 chain 43932 chr7 159138663 + 107525183 107525690 MER9a2 513 - 0 513 64292 302 1 7 204 chain 95884 chr7 159138663 + 107528250 107529927 LTR12C 1709 + 0 1709 37850 274 22 22 84 0 167 23 5 7 142 0 118 271 242 10 89 24 0 8 20 13 31 0 5 143 98 0 32 3 4 13 0 101 70 1 0 82 chain 1099 chr7 159138663 + 107529094 107529135 LTR12C 1709 + 734 1053 206271 16 5 283 20 chain 1161 chr7 159138663 + 107529213 107529287 LTR12C 1709 + 734 1086 175345 27 0 278 47 chain 18843 chr7 159138663 + 107556847 107557070 AluSc 308 + 10 234 130537 81 0 1 142 chain 98774 chr7 159138663 + 107562170 107563411 L1PA8 5853 - 7 1380 37083 86 1 0 7 0 17 29 0 8 11 3 27 4 0 1 48 2 0 44 1 0 480 0 2 70 11 75 78 0 5 93 1 0 4 0 12 164 0 4 104 chain 5955 chr7 159138663 + 107631001 107631069 MER41A 554 - 88 156 185640 68 chain 17009 chr7 159138663 + 107678994 107679216 MER30 238 + 0 230 135568 106 8 16 108 chain 49489 chr7 159138663 + 107680248 107680924 L1PA13 3608 + 2758 3433 59396 26 0 1 107 8 9 104 1 5 122 1 0 27 1 0 114 2 0 61 1 0 28 0 1 28 10 7 35 chain 45349 chr7 159138663 + 107757998 107758552 MER41A 554 - 0 554 62655 222 9 8 5 0 1 318 chain 29140 chr7 159138663 + 107766999 107767312 AluYb8 318 - 9 318 88362 177 4 0 132 chain 32858 chr7 159138663 + 107810776 107811228 MER4A1 472 + 0 472 79440 175 1 0 36 10 35 140 9 4 29 0 1 52 chain 20778 chr7 159138663 + 107841069 107841562 L1PB1 5432 + 4986 5427 124684 86 0 1 25 49 15 22 1 0 9 1 0 14 16 10 52 2 1 15 1 0 43 41 29 16 36 29 17 0 14 7 1 0 13 2 1 17 2 0 5 chain 396867 chr7 159138663 + 107852410 107862299 L1PB1 5432 + 19 5420 10208 69 15 19 297 1 0 577 4 8 413 16 0 138 0 1 287 4613 174 456 0 4 32 5 0 345 1 3 82 1 7 83 1 0 4 10 11 706 0 1 76 8 12 58 0 1 745 3 0 77 0 2 105 4 3 288 1 2 11 5 0 22 1 0 9 1 0 9 6 2 11 3 1 49 1 0 18 1 0 38 6 5 16 3 0 12 9 0 19 24 19 24 1 0 21 18 0 13 1 0 16 chain 331435 chr7 159138663 + 107854365 107858830 L1P3 4156 - 17 4150 12148 24 2 1 7 2 0 449 11 0 80 0 1 27 0 4 136 3 4 55 18 19 6 0 1 33 11 12 183 0 4 234 313 0 152 0 4 44 7 9 12 8 0 166 0 1 246 1 0 865 1 0 6 3 4 57 9 8 8 1 0 383 0 1 271 11 12 290 2 1 67 11 1 42 5 1 36 6 5 161 chain 130305 chr7 159138663 + 107895592 107897080 SVA_B 1603 + 0 1599 28018 19 22 25 449 0 77 179 0 40 132 4 0 42 4 0 27 1 0 609 chain 4094 chr7 159138663 + 107909659 107909711 MER96B 391 + 142 194 206029 52 chain 496963 chr7 159138663 + 107913207 107919341 L1PA6 6164 - 8 6164 7011 104 1 6 700 0 1 16 6 11 359 0 1 155 7 9 122 0 1 536 6 7 109 0 2 49 1 0 444 0 1 36 0 1 218 0 3 75 0 1 399 0 1 455 2 0 11 0 1 293 0 1 949 30 0 8 0 30 134 0 4 82 1 18 235 2 1 32 1 2 84 19 0 132 5 8 113 1 0 125 12 6 65 chain 3929 chr7 159138663 + 107933063 107933163 MIR 256 + 79 141 208427 9 37 0 46 1 0 7 chain 44351 chr7 159138663 + 107977732 107978272 LTR17 781 + 259 775 63756 68 1 0 377 22 0 66 1 0 5 chain 370009 chr7 159138663 + 107979973 107984280 HERV17-int 4347 + 12 4347 11098 15 1 0 52 1 0 13 0 1 20 2 0 18 9 8 75 8 8 75 1 0 572 0 1 18 0 3 456 0 1 11 0 23 86 2 3 132 0 1 375 0 1 275 7 10 524 0 1 312 3 0 640 0 3 562 2 0 40 chain 28392 chr7 159138663 + 107984610 107984934 LTR17 781 + 0 324 91608 324 chain 4578 chr7 159138663 + 107987363 107987458 MER33 330 + 195 291 199893 12 8 11 32 14 12 29 chain 10288 chr7 159138663 + 107997778 107998053 AluSq10 312 - 13 156 159196 108 34 0 5 98 0 30 chain 535075 chr7 159138663 + 108028013 108034168 L1PA5 6144 - 3 6144 3583 144 0 1 19 0 5 1180 0 1 450 0 4 661 0 1 70 0 2 257 34 14 35 0 1 982 2 1 501 0 1 377 0 2 353 7 10 223 0 3 520 21 3 193 0 1 126 chain 3568 chr7 159138663 + 108133552 108133596 MLT1H2 457 + 398 442 214163 44 chain 224550 chr7 159138663 + 108148219 108150634 L1PA2 6032 + 3617 6032 17626 2415 chain 5200 chr7 159138663 + 108153504 108153564 MLT1A0 366 + 256 316 193023 60 chain 37283 chr7 159138663 + 108163750 108164259 MER84 505 + 0 505 73108 333 11 13 105 20 14 40 chain 12930 chr7 159138663 + 108175703 108176044 THE1D 372 - 5 342 148501 11 1 0 72 24 9 28 8 13 11 57 63 49 13 12 20 24 26 23 chain 10844 chr7 159138663 + 108178404 108178527 MLT2A1 477 - 333 456 156811 123 chain 120374 chr7 159138663 + 108178744 108180324 HERVL-int 5654 + 3524 5654 30915 136 7 6 91 30 1 75 11 583 196 1 0 62 52 52 31 1 7 9 6 0 126 1 4 40 0 1 329 0 1 82 0 3 127 0 1 167 chain 31669 chr7 159138663 + 108180326 108180811 MLT2A1 477 + 2 477 81377 86 0 38 16 5 6 19 6 3 107 1 0 108 4 0 38 52 11 43 chain 11393 chr7 159138663 + 108223102 108223241 MSTD 398 - 251 390 154728 139 chain 37339 chr7 159138663 + 108227760 108228266 MLT2A2 560 - 0 560 73039 46 16 18 92 1 51 145 10 11 130 0 1 66 chain 28456 chr7 159138663 + 108255786 108256097 L1PA2 6032 - 948 1259 90977 311 chain 88296 chr7 159138663 + 108256097 108257053 L1PA2 6032 + 5076 6032 40263 956 chain 4258 chr7 159138663 + 108262006 108262055 MIR 256 - 67 116 203762 49 chain 92921 chr7 159138663 + 108265109 108267389 HUERS-P1-int 2401 - 262 2196 38679 15 2 0 47 1 0 7 30 19 10 1 0 3 1 0 25 1 0 3 3 0 8 36 13 15 5 4 32 2 1 12 1 0 6 110 55 14 7 0 7 2 0 8 1 0 12 61 31 17 9 0 18 2 1 16 8 6 10 6 0 7 40 27 28 4 0 27 15 1 98 1 0 59 1 2 5 1 0 10 87 80 23 0 1 74 16 13 30 2 0 79 3 0 18 9 7 11 4 2 27 0 1 19 2 1 11 5 1 37 2 0 9 1 0 8 1 0 142 0 1 35 11 3 119 2 1 14 16 0 97 2 1 24 9 6 17 10 1 13 9 6 10 22 6 7 2 0 23 3 1 46 1 0 5 7 5 40 1 0 13 1 0 13 98 46 14 11 8 14 4 0 34 4 0 13 1 0 25 chain 43423 chr7 159138663 + 108286088 108286588 MER9a2 513 - 0 513 64902 225 5 18 270 chain 122639 chr7 159138663 + 108296716 108298223 LTR12C 1709 - 0 1709 30183 82 1 0 399 0 4 69 0 47 260 0 118 156 23 12 96 0 2 75 8 51 42 6 5 84 0 1 206 chain 27309 chr7 159138663 + 108309717 108310121 MLT2A1 477 + 0 477 95248 142 0 1 4 28 32 20 1 0 172 5 75 11 1 0 20 chain 450472 chr7 159138663 + 108310121 108316840 HERVL-int 5654 + 0 5654 8752 52 10 9 37 3 4 7 1 0 761 14 19 124 0 1 6 1 0 382 2 0 175 9 5 80 8 9 47 1069 0 397 4 5 115 16 17 247 0 6 175 11 10 4 0 1 32 4 1 5 0 3 447 0 1 232 0 1 177 1 0 538 11 1 223 18 17 190 1 0 485 0 1 103 0 1 58 5 6 121 1 5 87 0 1 223 chain 66006 chr7 159138663 + 108312128 108312849 SVA_D 2077 + 1132 2077 50094 53 0 225 649 1 0 18 chain 30196 chr7 159138663 + 108316840 108317231 MLT2A1 477 + 0 396 84201 142 0 1 26 0 4 26 1 0 124 1 0 61 0 2 10 chain 44399 chr7 159138663 + 108317653 108318348 L1MA2 4263 - 158 807 63693 47 7 0 18 34 0 74 1 0 9 6 5 138 28 26 111 0 3 11 3 2 76 4 0 8 1 2 119 chain 230920 chr7 159138663 + 108329484 108333014 L1MA1 4479 - 317 4254 17257 11 1 0 8 2 1 34 12 10 12 32 15 119 10 7 86 1 0 14 2 0 19 1 0 63 0 1 7 1 0 20 3 1 20 4 3 189 0 1 10 1 0 57 0 2 26 11 393 48 7 5 17 7 5 12 0 1 59 27 24 5 2 0 53 1 0 33 2 0 101 1 0 85 0 4 60 16 15 29 0 3 44 0 1 79 0 7 124 7 8 37 1 0 107 15 27 35 0 1 4 1 0 161 6 7 122 9 10 204 0 1 17 0 1 350 0 1 4 19 21 73 5 0 5 0 3 29 0 1 6 25 40 33 1 0 121 2 6 19 29 32 33 0 4 60 0 5 47 0 14 40 7 8 96 0 2 36 16 1 33 0 1 74 2 0 18 5 9 23 1 0 4 chain 30282 chr7 159138663 + 108357532 108357878 L1PA4 6152 + 5808 6152 83985 337 2 0 7 chain 211583 chr7 159138663 + 108367400 108369792 L1PA4 6152 - 1 2396 18390 149 2 1 188 0 1 1466 8 10 94 0 1 485 chain 162043 chr7 159138663 + 108369792 108371611 L1PA4 6152 + 1929 3754 23043 204 1 2 99 0 1 151 0 4 1364 chain 86924 chr7 159138663 + 108397558 108398889 L1PA13 3608 + 138 1461 40816 15 11 10 15 3 0 25 26 15 69 6 4 125 1 0 12 1 0 16 3 1 16 6 2 19 2 1 17 3 1 15 3 1 17 1 0 96 2 0 268 2 29 123 1 0 56 11 14 78 32 15 78 7 20 150 chain 24200 chr7 159138663 + 108408211 108408500 L1PA7 6471 - 3 293 109213 58 0 1 231 chain 21872 chr7 159138663 + 108413291 108413555 AluSp 311 + 21 285 120741 264 chain 17099 chr7 159138663 + 108430585 108430974 L1PA15 4387 - 20 387 135319 11 1 0 24 11 6 11 3 1 22 7 6 13 19 16 37 49 41 48 1 0 22 10 9 100 chain 7061 chr7 159138663 + 108475702 108475786 L1MA4 2864 - 2182 2267 177023 49 0 1 35 chain 24488 chr7 159138663 + 108482281 108482698 L1MA3 4352 - 26 406 107611 12 8 7 19 1 0 6 1 0 24 2 0 22 4 0 122 57 29 139 chain 2774 chr7 159138663 + 108507821 108507874 MER53 195 + 117 172 229102 13 10 12 30 chain 29877 chr7 159138663 + 108517431 108517925 HUERS-P2-int 2744 + 2271 2742 85180 126 0 1 41 0 2 95 30 18 27 24 20 14 1 0 40 3 0 34 1 0 8 3 1 5 2 0 12 2 0 6 0 1 20 chain 13879 chr7 159138663 + 108527242 108527530 L1PB1 5432 - 5 273 144984 5 2 0 18 1 0 12 1 0 22 1 0 16 28 30 27 13 1 16 1 0 44 5 4 11 2 1 52 2 0 9 chain 6042 chr7 159138663 + 108528874 108528948 L1PA16 3655 - 660 738 184875 10 0 4 64 chain 406043 chr7 159138663 + 108555445 108560846 L1PB1 5432 - 21 5413 9912 5 0 2 13 1 0 17 0 1 4 2 0 23 2 0 14 1 0 4 3 1 14 9 0 15 7 4 14 1 0 43 19 17 54 2 0 8 19 14 6 2 0 24 1 0 8 0 5 17 11 12 450 0 1 76 0 1 13 0 4 2 4 0 196 0 1 522 2 1 4 0 1 79 5 4 875 2 1 205 0 3 137 1 5 336 0 1 535 0 1 210 46 36 233 1 2 40 0 1 45 0 7 66 0 1 221 0 5 27 0 1 169 4 2 8 1 0 70 0 1 4 1 0 363 7 9 78 chain 551170 chr7 159138663 + 108577591 108583742 L1PA4 6152 - 0 6152 1290 3388 0 1 220 0 1 1306 1 0 1236 chain 41166 chr7 159138663 + 108601107 108601592 L1PA7 6471 - 2 489 67687 456 0 2 29 chain 79408 chr7 159138663 + 108601592 108602547 L1PA7 6471 + 5017 5980 43867 133 5 6 151 3 4 223 0 3 77 0 3 363 chain 31154 chr7 159138663 + 108605505 108605920 MLT2A1 477 - 13 477 82247 37 3 53 169 0 1 24 1 2 8 5 2 168 chain 224864 chr7 159138663 + 108617828 108620719 L1PA7 6471 - 13 4115 17608 180 18 20 634 0 3 18 0 4 5 0 1 55 0 1 324 1 2 219 8 5 89 0 1229 62 2 1 29 36 12 31 1 0 37 26 14 117 3 14 252 0 4 196 3 0 205 1 0 7 1 5 51 12 7 131 0 1 137 chain 53022 chr7 159138663 + 108630655 108631520 MER4E 760 - 2 760 57003 228 20 0 45 0 16 30 6 5 48 0 4 21 0 2 91 1 0 5 0 1 98 8 7 68 109 1 58 7 8 22 chain 100621 chr7 159138663 + 108650718 108651838 L1PA3long 6157 - 10 1130 36578 248 1 0 486 0 1 385 chain 189048 chr7 159138663 + 108651838 108653973 L1P1 4361 + 2195 4328 20141 1956 1 0 154 1 0 23 chain 46635 chr7 159138663 + 108671548 108672131 L1PA7 6471 - 4 592 61510 8 3 0 256 0 4 215 0 4 101 chain 201920 chr7 159138663 + 108681209 108683681 L1PA7 6471 + 3965 6470 19072 210 12 11 470 1 14 291 2 1 5 0 1 16 0 1 16 1 2 174 5 7 46 0 3 168 0 2 12 0 2 197 0 3 661 0 2 28 1 3 142 0 3 14 chain 18430 chr7 159138663 + 108710012 108710382 MSTA 426 - 0 417 131689 92 27 47 38 50 49 30 7 11 22 0 3 5 12 33 87 chain 10186 chr7 159138663 + 108722382 108722541 L1P3 4156 - 160 323 159690 67 1 0 6 5 6 58 8 12 14 chain 130929 chr7 159138663 + 108725219 108726853 L1PA7 6471 + 4826 6461 27878 211 0 3 69 4 0 77 0 9 33 0 4 241 0 5 121 0 4 17 13 17 256 0 1 114 27 0 51 1 2 194 0 1 205 chain 33807 chr7 159138663 + 108728323 108728730 L1PA6 6164 + 5749 6156 77930 234 0 2 7 3 1 163 chain 87943 chr7 159138663 + 108734700 108735658 L1PA3long 6157 - 0 958 40398 958 chain 99563 chr7 159138663 + 108735733 108736794 L1HS 6032 - 1650 2711 36799 1061 chain 153634 chr7 159138663 + 108736794 108738435 L1HS 6032 + 4390 6031 24139 1641 chain 28635 chr7 159138663 + 108754315 108754767 MLT2A2 560 - 0 560 90581 147 9 118 77 69 68 150 chain 154911 chr7 159138663 + 108776883 108779452 L1MA1 4479 - 295 2822 23989 12 7 0 10 4 1 10 0 2 7 1 0 35 2 0 29 1 0 123 14 10 40 31 36 10 1 0 13 2 0 7 15 14 58 0 1 5 33 30 17 6 5 22 9 11 89 7 6 34 0 1 28 2 0 125 31 27 5 0 1 97 5 0 12 1 0 57 0 3 34 8 6 122 10 11 36 22 20 4 1 0 38 9 10 5 0 2 5 3 0 31 6 5 58 1 0 29 5 0 4 0 3 100 1 0 66 1 0 43 35 38 306 1 2 6 1 0 22 5 7 5 1 0 61 5 0 3 13 0 25 0 1 129 1 0 208 0 3 53 0 3 30 chain 24805 chr7 159138663 + 108779452 108779750 AluY 311 + 0 304 105861 47 1 7 250 chain 7474 chr7 159138663 + 108784293 108784400 L1P4 1494 - 148 254 174312 5 2 0 7 0 1 93 chain 5571 chr7 159138663 + 108788455 108788520 MLT1A1 405 - 12 77 189368 65 chain 29933 chr7 159138663 + 108821789 108822166 THE1C 375 - 0 375 85012 361 2 0 14 chain 13168 chr7 159138663 + 108829152 108829304 AluYk4 311 - 0 152 147589 152 chain 30675 chr7 159138663 + 108833078 108833476 LTR66 600 - 202 600 83083 125 15 15 258 chain 33376 chr7 159138663 + 108886574 108887005 LTR3B 427 - 0 427 78608 40 0 1 46 1 0 4 6 4 33 12 10 289 chain 29944 chr7 159138663 + 108893635 108894082 MLT2A1 477 - 0 477 84989 8 0 4 7 1 0 24 22 0 11 5 43 16 1 7 184 8 12 20 0 1 140 chain 76547 chr7 159138663 + 108906916 108907970 MER11C 1089 + 0 1073 45188 146 8 9 92 4 13 57 5 9 58 2 1 305 1 5 4 1 0 38 0 1 95 30 31 39 0 1 16 1 0 144 0 1 8 chain 6155 chr7 159138663 + 108926243 108926472 MLT1D-int 1367 - 753 984 183943 19 35 39 22 60 61 43 23 20 27 chain 57126 chr7 159138663 + 108939045 108939725 LTR12_ 688 + 0 681 54447 49 0 1 631 chain 239449 chr7 159138663 + 108939760 108942853 HERV9-int 5642 + 0 4812 16798 260 1 0 207 0 4 242 0 4 64 11 10 69 1 0 225 80 0 22 3 0 128 14 9 9 0 1 154 1 0 228 12 13 89 4 5 45 0 3 438 1 2 508 5 6 95 0 1795 177 chain 49681 chr7 159138663 + 108944362 108944974 LTR12_ 688 + 0 673 59249 89 0 41 13 0 24 74 5 1 431 chain 7074 chr7 159138663 + 108965141 108965227 MER57A1 433 + 184 270 176925 86 chain 6883 chr7 159138663 + 108965335 108965419 MER57A1 433 + 186 270 178330 84 chain 150380 chr7 159138663 + 108966833 108968513 L1PA4 6152 - 9 1691 24555 502 0 1 890 0 1 288 chain 19873 chr7 159138663 + 108974900 108975172 AluSq10 312 - 29 303 127584 200 28 30 44 chain 53086 chr7 159138663 + 109013681 109014500 L1PB1 5432 - 16 799 56966 12 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 9 7 23 33 20 39 7 6 11 2 1 53 17 11 10 1 0 8 1 0 24 1 0 6 6 5 299 1 0 37 2 0 134 chain 18003 chr7 159138663 + 109014500 109014742 L1PB 1623 + 1212 1453 132652 85 0 2 6 2 0 141 1 0 7 chain 462442 chr7 159138663 + 109021492 109026713 L1PA4 6152 + 915 6143 8304 1267 0 2 1766 2 0 89 4 5 130 0 1 179 0 1 280 1 0 230 1 0 554 0 6 718 chain 382615 chr7 159138663 + 109055825 109060101 L1PA4 6152 - 11 4305 10676 137 0 1 1456 1 0 1233 3 0 92 0 18 626 0 3 728 chain 2806 chr7 159138663 + 109071360 109071393 L1PB3 3668 - 100 133 228650 33 chain 3188 chr7 159138663 + 109088434 109088470 L1P5 443 + 262 298 221149 36 chain 60174 chr7 159138663 + 109091857 109092601 LTR17 781 + 0 763 52741 44 4 2 281 1 0 382 6 28 26 chain 8523 chr7 159138663 + 109092673 109092810 L1M1 2793 - 241 375 168170 4 1 0 90 11 12 6 3 0 22 chain 28119 chr7 159138663 + 109097792 109098093 AluYk11 308 + 0 301 92580 301 chain 30160 chr7 159138663 + 109101428 109102020 L1PB1 5432 + 4880 5423 84308 215 28 6 14 6 0 23 1 0 8 1 0 9 8 4 9 2 0 45 22 31 37 1 0 15 54 39 11 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 46307 chr7 159138663 + 109122312 109131309 L1PA5 6144 - 3 784 61768 258 8284 67 100 0 1 355 chain 27295 chr7 159138663 + 109131309 109131632 L1PA5 6144 + 5820 6144 95286 63 1 2 116 0 1 30 1 0 112 chain 33311 chr7 159138663 + 109154431 109154865 MLT2A1 477 - 0 477 78717 41 4 0 6 4 46 60 1 0 150 1 5 26 0 1 24 0 1 117 chain 45181 chr7 159138663 + 109164852 109165374 L1PA5 6144 + 5610 6132 62841 522 chain 34982 chr7 159138663 + 109231890 109232317 LTR7 482 - 13 482 76207 145 0 10 17 0 31 41 0 1 224 chain 315208 chr7 159138663 + 109233578 109237243 HERVH-int 3825 - 0 3825 12797 320 4 8 119 0 2 422 0 1 51 0 4 317 0 5 750 1 0 539 1 0 138 1 0 370 0 1 13 0 2 6 0 1 59 1 0 40 3 40 13 3 111 160 1 0 333 chain 34948 chr7 159138663 + 109237253 109237736 LTR7 482 - 8 482 76266 150 0 10 22 0 31 33 3 4 44 51 0 180 chain 3462 chr7 159138663 + 109264763 109264805 LTR14B 630 - 588 630 215965 42 chain 78074 chr7 159138663 + 109272589 109273633 MER11A 1151 - 17 1142 44479 34 2 1 127 0 1 53 0 1 58 41 24 155 6 7 354 0 1 24 4 0 140 0 99 46 chain 144192 chr7 159138663 + 109284339 109286301 HERVH-int 3825 - 259 2643 25442 271 3 4 26 11 22 57 0 367 401 5 4 5 0 1 227 0 5 75 10 15 84 0 2 15 12 47 135 0 3 8 3 0 77 5 32 26 0 4 224 9 0 203 27 0 39 0 1 4 chain 10705 chr7 159138663 + 109286325 109286460 HERVH-int 3825 - 2661 2796 157393 135 chain 22378 chr7 159138663 + 109286460 109286730 HERVH-int 3825 - 2799 3068 118596 248 1 0 21 chain 4568 chr7 159138663 + 109286730 109286875 HERVH-int 3825 - 3219 3481 200029 18 13 12 6 1 0 14 41 160 52 chain 25629 chr7 159138663 + 109286892 109287199 HERVH-int 3825 - 3497 3804 101587 307 chain 256363 chr7 159138663 + 109289491 109292334 L1PA3long 6157 - 7 2863 15913 81 0 1 1185 0 4 1165 0 8 412 chain 26775 chr7 159138663 + 109293426 109293799 L1PA8 5853 - 11 378 97065 79 7 6 16 2 1 60 4 3 69 2 0 44 1 0 89 chain 13752 chr7 159138663 + 109313285 109313473 L1P3 4156 + 3954 4139 145427 147 17 14 24 chain 3240 chr7 159138663 + 109318461 109318498 MLT2B2 565 - 528 565 220229 37 chain 541357 chr7 159138663 + 109327193 109333330 L1PA4 6152 - 2 6152 2611 842 0 4 427 0 4 1179 1 0 178 1 0 333 1 0 125 0 1 854 0 2 335 1 0 630 3 0 202 1 0 100 4 0 780 0 14 140 chain 37596 chr7 159138663 + 109344888 109345664 L1PB1 5432 - 41 619 72689 21 1 0 7 1 0 17 2 0 15 1 0 4 9 0 30 14 1 15 1 0 45 18 16 53 2 0 8 17 12 13 2 0 17 174 14 264 0 1 25 chain 16458 chr7 159138663 + 109353167 109353424 L1PA13 3608 + 3198 3443 137043 33 0 1 41 2 0 62 1 0 56 1 0 5 2 0 27 14 7 13 chain 533438 chr7 159138663 + 109359190 109365313 L1PA4 6152 + 12 6140 3780 2992 0 1 204 2 1 11 0 1 1125 0 4 1789 chain 24461 chr7 159138663 + 109380104 109380472 THE1B 368 - 0 368 107751 60 0 1 4 6 4 56 13 11 15 4 8 9 1 0 4 0 4 23 1 0 71 3 0 98 chain 3230 chr7 159138663 + 109393838 109393879 MIR 256 - 142 183 220415 41 chain 40737 chr7 159138663 + 109401712 109402291 L1PA7 6471 + 5928 6469 68262 38 1 0 56 43 11 158 7 3 52 0 2 137 1 0 74 2 0 10 chain 3831 chr7 159138663 + 109413751 109413813 L1PB1 5432 + 489 551 209903 44 1 0 5 1 2 11 chain 3699 chr7 159138663 + 109430201 109430255 MLT2A2 560 - 0 54 211954 5 2 0 40 0 2 7 chain 153790 chr7 159138663 + 109430725 109435030 HERVL-int 5654 - 5 4287 9471 104 22 25 82 0 2 80 16 0 82 0 3 44 34 10 60 4 0 173 27 2 69 0 1 190 7 9 196 0 17 446 4 0 295 4 5 156 1 0 45 0 1 227 1 0 1125 0 1 4 1 0 11 3 15 6 3 0 70 9 18 83 14 14 31 0 1 57 0 1 277 42 42 153 0 2 47 chain 537657 chr7 159138663 + 109435040 109441191 L1PA4 6152 + 0 6151 3211 384 0 1 343 3 4 308 1 0 2366 9 11 5 2 0 527 1 0 235 0 1 362 1 0 572 0 1 22 1 0 750 1 0 248 0 1 10 chain 48262 chr7 159138663 + 109441203 109442554 HERVL-int 5654 - 4289 5654 9471 21 0 2 213 1 0 126 8 9 240 0 2 524 0 1 125 0 9 93 chain 26770 chr7 159138663 + 109446950 109447303 THE1B 368 + 0 368 97087 44 0 6 6 0 9 101 1 0 29 1 3 95 1 0 75 chain 120673 chr7 159138663 + 109447338 109448874 THE1B-int 1605 + 34 1605 30808 200 0 1 191 0 25 68 3 2 35 0 6 113 0 3 84 16 17 826 chain 22303 chr7 159138663 + 109473884 109474180 AluSg7 307 + 0 296 118904 30 21 19 77 0 1 152 0 1 16 chain 10324 chr7 159138663 + 109476593 109476709 L1PA4 6152 + 5741 5857 159014 116 chain 8656 chr7 159138663 + 109476710 109476806 L1PA4 6152 + 5871 5967 167444 96 chain 41376 chr7 159138663 + 109498346 109498887 L1PA7 6471 + 5929 6468 67435 273 0 1 48 25 25 177 4 1 14 chain 263813 chr7 159138663 + 109500536 109503705 L1PA6 6164 + 2989 6162 15495 175 0 2 19 5 0 4 0 1 276 0 2 369 0 1 506 16 22 282 0 1 22 3 2 99 5 2 708 2 0 337 1 2 331 0 1 9 chain 4911 chr7 159138663 + 109514263 109514447 L1MC1 2226 + 1998 2159 196146 43 28 25 16 5 0 12 55 41 17 1 0 7 chain 61271 chr7 159138663 + 109529221 109529987 L1PA7 6471 + 5674 6450 52221 430 0 4 151 30 28 77 3 11 75 chain 16920 chr7 159138663 + 109540943 109541136 L1PA4 6152 + 5947 6140 135793 193 chain 541818 chr7 159138663 + 109545485 109554281 L1PA3long 6157 + 0 6157 2541 574 2646 0 554 0 1 61 0 3 528 0 1 1575 0 3 214 2 1 2642 chain 140274 chr7 159138663 + 109546072 109547573 L1HS 6032 - 1138 2639 26103 1501 chain 105095 chr7 159138663 + 109547573 109548698 L1HS 6032 + 4907 6032 35452 1125 chain 39833 chr7 159138663 + 109555269 109555692 L1HS 6032 - 2 425 69574 423 chain 540774 chr7 159138663 + 109559098 109565288 L1PA4 6152 - 0 6150 2694 150 0 1 289 0 2 408 0 4 2006 0 1 120 1 0 858 1 0 38 0 1 253 47 0 2019 chain 32704 chr7 159138663 + 109592317 109592720 THE1C-int 1605 - 1185 1588 79679 403 chain 21566 chr7 159138663 + 109598982 109599242 L1PA7 6471 + 6209 6470 121899 243 0 1 17 chain 123007 chr7 159138663 + 109614638 109616125 L1PA7 6471 - 10 1506 30047 757 1 4 9 0 4 63 1 4 26 6 5 624 chain 20821 chr7 159138663 + 109620133 109620394 L1PA5 6144 - 5 266 124539 133 0 7 10 7 0 111 chain 3988 chr7 159138663 + 109626991 109627036 MLT1B 390 + 334 379 207561 45 chain 24160 chr7 159138663 + 109629025 109629312 AluY 311 + 0 284 109424 55 3 0 229 chain 12750 chr7 159138663 + 109632220 109632384 L1PA7 6471 - 6 166 149256 6 4 0 154 chain 535280 chr7 159138663 + 109670186 109676346 L1PA4 6152 - 1 6151 3551 857 1 0 1245 1 2 220 4 0 138 0 1 510 0 1 1028 0 6 1308 17 0 257 0 3 574 chain 209374 chr7 159138663 + 109698785 109701091 L1PA3long 6157 - 0 2309 18537 1166 1 0 629 0 4 510 chain 146227 chr7 159138663 + 109739316 109741527 L1PB1 5432 + 3144 5422 25128 56 2 0 171 1 2 13 2 0 45 0 1 306 6 5 52 20 124 107 5 9 416 9 5 172 3 0 80 3 0 54 90 91 250 14 12 29 1 0 14 16 10 52 2 1 12 1 3 45 1 0 7 59 44 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 12582 chr7 159138663 + 109746339 109746475 L1PA2 6032 - 1 137 149912 136 chain 416813 chr7 159138663 + 109760162 109766307 L1PA8 5853 + 105 5844 9609 130 0 11 59 0 4 425 8 7 7 14 0 312 0 1 46 14 379 119 0 1 100 11 0 4 15 0 886 6 10 148 0 1 31 0 32 70 1 0 95 2 0 5 808 3 784 11 20 248 0 2 9 0 4 837 7 19 92 2 7 551 1 0 46 2 0 70 1 0 7 3 1 52 2 1 18 2 1 84 chain 71491 chr7 159138663 + 109762670 109763475 L1PA3long 6157 + 5351 6157 47377 330 0 2 231 1 0 243 chain 13733 chr7 159138663 + 109767579 109767728 L1PA2 6032 + 5879 6028 145492 149 chain 82602 chr7 159138663 + 109772267 109773222 L1PA5 6144 - 7 966 42502 842 1 5 112 chain 69873 chr7 159138663 + 109781038 109781841 L1PA4 6152 - 0 801 48449 13 0 3 97 0 1 25 7 0 115 0 1 546 chain 33743 chr7 159138663 + 109781841 109782226 L1PA4 6152 + 4967 5352 76610 385 chain 3652 chr7 159138663 + 109789024 109789069 MER52A 1651 - 810 856 212777 29 0 1 16 chain 6703 chr7 159138663 + 109799205 109799310 MER30 238 + 130 232 179665 49 14 11 42 chain 7414 chr7 159138663 + 109800631 109800710 L1PA3long 6157 - 2 81 174689 79 chain 41466 chr7 159138663 + 109804014 109804477 L1PA5 6144 + 5674 6137 67330 463 chain 16094 chr7 159138663 + 109839894 109840125 L1MA2 4263 - 817 1044 138077 74 5 0 17 6 7 129 chain 29191 chr7 159138663 + 109872932 109873243 AluYa5 310 + 0 310 88090 123 1 0 187 chain 7150 chr7 159138663 + 109879714 109879853 L1MA3 4352 + 4177 4314 176404 23 14 20 16 6 2 20 2 0 24 1 0 6 1 0 26 chain 31378 chr7 159138663 + 109881819 109882177 L1PA4 6152 + 5784 6143 81857 218 1 3 134 1 0 4 chain 9292 chr7 159138663 + 109894004 109894161 MER30 238 + 47 227 164102 46 0 3 10 7 24 22 6 12 26 3 0 37 chain 13538 chr7 159138663 + 109903407 109903591 Tigger3b 1229 + 390 565 146222 156 10 1 18 chain 105432 chr7 159138663 + 109905957 109907115 L1PA2 6032 - 9 1166 35390 142 1 0 1015 chain 60876 chr7 159138663 + 109907115 109907770 L1PA2 6032 + 4220 4875 52348 655 chain 33677 chr7 159138663 + 109925986 109926392 L1P1 4361 + 3935 4341 78131 89 0 3 123 1 0 154 2 1 23 2 1 12 chain 57020 chr7 159138663 + 109928559 109929324 MER4E1 777 + 0 772 54520 23 0 7 265 1 0 137 0 3 101 31 15 53 16 30 138 chain 2970 chr7 159138663 + 109949264 109949298 L1MA8 2339 - 257 291 225667 34 chain 67802 chr7 159138663 + 109960066 109961147 MER11A 1151 + 1 1151 49322 64 0 1 19 0 91 54 1 0 64 4 0 32 0 2 51 0 3 6 10 11 41 5 6 5 0 1 84 1 8 121 13 4 14 6 7 53 0 4 41 50 0 33 8 41 21 18 0 37 0 1 57 9 10 78 5 9 76 chain 513558 chr7 159138663 + 109988367 109997294 L1PA7 6471 - 23 6468 5826 787 2490 0 36 0 3 506 13 8 159 1 0 174 0 1 393 0 1 619 0 1 65 20 14 128 0 4 195 1 2 252 0 4 45 0 1 203 0 3 90 5 4 55 0 1 36 37 17 44 0 1 74 0 2 304 0 14 789 1 2 993 5 6 355 8 10 44 chain 27951 chr7 159138663 + 109989162 109989470 L1PA3long 6157 - 2153 2461 93161 308 chain 194050 chr7 159138663 + 109989471 109991625 L1PA3long 6157 + 4003 6157 19668 2154 chain 103734 chr7 159138663 + 110006773 110007954 L1PA5 6144 - 1704 2889 35747 690 0 1 63 0 2 404 0 1 24 chain 149587 chr7 159138663 + 110007954 110009643 L1PA5 6144 + 4452 6139 24677 705 1 0 719 11 10 253 chain 90420 chr7 159138663 + 110075901 110077092 HERVL-int 5654 + 4460 5654 39502 328 1 0 4 0 1 425 1 3 126 31 31 25 0 1 20 8 8 222 chain 36799 chr7 159138663 + 110078816 110079231 L1PA3long 6157 + 5559 5974 73802 415 chain 30254 chr7 159138663 + 110081801 110082117 AluYb8 318 - 2 318 84048 316 chain 37552 chr7 159138663 + 110097566 110098032 L1P3 4156 + 3665 4131 72751 68 0 1 133 0 2 238 2 0 7 2 1 16 chain 525437 chr7 159138663 + 110112286 110118389 L1PA4 6152 + 10 6143 4636 500 15 16 1675 0 2 117 2 0 4 0 1 141 0 1 696 0 1 7 9 5 153 2 1 680 0 1 11 0 1 1064 0 23 54 1 0 140 0 4 721 0 2 7 0 1 104 chain 32365 chr7 159138663 + 110121679 110122096 THE1B-int 1605 - 1180 1599 80248 380 8 10 29 chain 13072 chr7 159138663 + 110132709 110132892 L1MA3 4352 + 4152 4326 147944 83 4 0 23 2 0 24 1 0 6 1 0 29 1 0 9 chain 26879 chr7 159138663 + 110163672 110163965 AluYk4 311 - 18 311 96703 293 chain 49464 chr7 159138663 + 110173261 110173918 MER50 708 + 0 686 59415 48 11 9 43 0 4 185 3 0 76 1 0 119 1 0 65 0 32 105 chain 3484 chr7 159138663 + 110190601 110190644 MSTB-int 1649 - 355 398 215618 43 chain 554135 chr7 159138663 + 110197588 110203620 L1PA2 6032 - 0 6032 931 156 0 7 4040 0 1 127 9 0 11 0 1 1689 chain 40441 chr7 159138663 + 110224605 110225047 L1PA2 6032 + 5590 6032 68674 442 chain 26931 chr7 159138663 + 110274151 110274529 MLT2A1 477 - 92 477 96511 82 19 17 81 0 1 15 16 20 148 0 4 17 chain 5741 chr7 159138663 + 110288508 110288611 MADE1 96 - 0 96 187722 24 3 4 18 9 1 49 chain 503409 chr7 159138663 + 110295197 110301285 L1PA4 6152 - 6 6142 6646 107 0 1 41 0 1 12 1 2 74 1 0 8 0 4 636 0 1 139 0 1 454 0 1 1675 0 2 725 1 3 6 2 0 58 1 23 353 7 0 7 0 1 364 1 5 106 12 11 149 9 0 991 0 1 9 6 18 16 7 21 110 chain 123181 chr7 159138663 + 110312488 110314074 THE1C-int 1605 - 11 1605 29984 226 0 1 92 1 0 434 8 10 60 0 1 15 7 1 284 17 25 395 0 1 8 1 0 8 0 1 15 3 5 12 chain 27214 chr7 159138663 + 110314074 110314446 THE1C 375 - 0 375 95547 26 1 0 20 1 4 126 10 9 8 0 2 180 chain 24047 chr7 159138663 + 110345846 110346170 L1PA16 3655 - 129 452 110064 110 0 1 109 17 15 88 chain 566063 chr7 159138663 + 110347060 110353080 L1HS 6032 - 0 6020 148 6020 chain 40291 chr7 159138663 + 110370160 110371028 MLT2A2 560 + 0 558 68889 397 365 55 106 chain 5209 chr7 159138663 + 110374709 110374770 MER61E 571 + 0 62 192927 57 0 1 4 chain 3029 chr7 159138663 + 110375531 110375563 MLT1A1-int 1737 + 658 690 224423 32 chain 212620 chr7 159138663 + 110377785 110380727 L1PBa 3878 + 192 3134 18318 45 7 5 172 3 0 5 18 21 67 0 1 16 2 1 141 1 0 231 82 74 267 0 5 41 8 10 100 0 1 52 0 2 171 1 0 309 0 3 113 0 1 590 1 7 9 7 1 61 12 1 81 5 11 173 9 11 49 2 1 14 5 7 72 chain 517713 chr7 159138663 + 110383568 110389954 L1PA7 6471 + 22 6461 5400 218 0 10 24 26 48 90 9 7 44 1 0 36 17 21 29 0 1 27 3 0 141 0 1 6 1 0 15 1 13 716 10 9 143 0 1 257 1 2 750 4 1 466 1 5 400 1 0 73 0 1 57 0 2 58 0 1 260 0 1 54 0 1 416 0 1 260 5 6 255 1 0 665 0 3 187 0 1 206 1 0 208 1 0 4 2 3 145 1 0 90 chain 3551 chr7 159138663 + 110411520 110411585 MIR 256 + 32 104 214524 12 11 17 10 0 1 32 chain 8395 chr7 159138663 + 110450610 110450727 MER85 139 - 0 139 168881 39 5 27 73 chain 180694 chr7 159138663 + 110455116 110457137 L1PA4 6152 - 2096 4118 20922 863 10 11 1148 chain 181803 chr7 159138663 + 110457137 110459175 L1PA4 6152 + 4108 6151 20807 1552 0 1 48 0 3 326 0 1 112 chain 173378 chr7 159138663 + 110464941 110466903 L1PA5 6144 + 4177 6144 21667 169 1 5 1010 0 1 782 chain 32154 chr7 159138663 + 110498661 110499017 L1PA3long 6157 - 0 356 80605 356 chain 28317 chr7 159138663 + 110542698 110543012 AluYa5 310 + 0 306 91879 126 8 0 180 chain 3258 chr7 159138663 + 110553490 110553614 L1MA9 1812 + 1302 1407 219797 27 51 33 22 12 11 12 chain 5235 chr7 159138663 + 110560905 110560970 L1MD3 1191 - 32 97 192672 65 chain 130263 chr7 159138663 + 110573906 110575692 L1P2 5180 - 2035 3665 28028 166 0 1 49 0 4 6 12 8 332 0 4 18 166 4 226 0 1 811 chain 58321 chr7 159138663 + 110575722 110576409 L1PA7 6471 + 4927 5614 53799 30 1 0 27 14 15 615 chain 42492 chr7 159138663 + 110576417 110576932 L1PA7 6471 + 5621 6137 66022 408 8 9 99 chain 13643 chr7 159138663 + 110576933 110577103 L1PA7 6471 + 6139 6304 145807 85 5 0 80 chain 11228 chr7 159138663 + 110577131 110577269 L1PA7 6471 + 6333 6470 155313 133 1 0 4 chain 2692 chr7 159138663 + 110591109 110591154 L1MB1 2102 + 2021 2065 230315 14 4 3 27 chain 68238 chr7 159138663 + 110593229 110594073 L1PA7 6471 - 5 850 49143 8 0 1 81 8 0 7 1 9 83 1 0 35 1 0 299 0 1 238 0 1 82 chain 6781 chr7 159138663 + 110619630 110619704 L1PA5 6144 + 6058 6132 179096 74 chain 24739 chr7 159138663 + 110620280 110620571 AluYc3 301 - 5 301 106227 25 1 5 151 1 2 113 chain 4325 chr7 159138663 + 110675941 110675995 MIR 256 + 79 138 202886 18 0 5 36 chain 51011 chr7 159138663 + 110691899 110692802 MER4D 903 + 0 895 58298 27 1 2 19 7 6 32 54 55 85 16 21 180 1 2 74 21 15 23 12 6 5 0 1 81 0 1 4 1 0 6 51 46 23 0 1 110 1 0 5 5 6 59 chain 118735 chr7 159138663 + 110702525 110704090 THE1B-int 1605 - 12 1605 31520 230 0 1 4 4 3 264 0 7 8 19 11 30 11 0 10 6 19 166 5 6 378 2 27 126 0 1 302 chain 89269 chr7 159138663 + 110704405 110705489 HERVL-int 5654 + 4567 5654 39900 789 0 3 295 chain 28682 chr7 159138663 + 110719170 110719472 AluYa5 310 - 8 310 90399 302 chain 4075 chr7 159138663 + 110740229 110740312 L1PB1 5432 - 30 108 206262 11 8 7 14 1 0 24 2 0 14 1 0 8 chain 5070 chr7 159138663 + 110749350 110749414 U13_ 108 - 44 108 194422 64 chain 22352 chr7 159138663 + 110761228 110761474 L1PA4 6152 - 816 1062 117456 246 chain 70638 chr7 159138663 + 110761474 110762280 L1PA4 6152 + 5329 6143 48090 327 1 3 239 1 0 108 0 7 130 chain 25204 chr7 159138663 + 110776088 110776381 AluSg7 307 - 13 307 103718 167 0 1 126 chain 11766 chr7 159138663 + 110819327 110819545 MER30 238 + 0 233 153193 56 4 5 46 4 0 10 32 53 28 3 0 35 chain 23246 chr7 159138663 + 110851783 110852069 AluY 311 + 0 299 114459 57 0 16 52 3 0 174 chain 567983 chr7 159138663 + 110883571 110889602 L1HS 6032 - 0 6032 25 5959 0 1 72 chain 122910 chr7 159138663 + 110889680 110891297 L1PA11 4918 + 2882 4504 30076 219 0 6 409 1 3 254 0 3 6 2 0 303 6 5 90 11 12 116 0 2 18 1 0 60 22 20 66 2 0 13 2 1 16 chain 18062 chr7 159138663 + 110897853 110898079 L1PA6 6164 - 12 240 132692 66 0 1 141 0 1 19 chain 28199 chr7 159138663 + 110911030 110911381 THE1C 375 + 0 352 92313 313 0 1 38 chain 28380 chr7 159138663 + 110917635 110918098 L1PB4 2604 + 2070 2549 91660 27 12 11 16 11 26 123 18 17 91 16 13 91 1 7 57 chain 95660 chr7 159138663 + 110928332 110929485 L1PA7 6471 + 5299 6470 37912 201 0 13 101 0 4 82 0 2 606 1 0 162 chain 82229 chr7 159138663 + 110963253 110964207 L1PA4 6152 + 5197 6152 42666 946 0 1 8 chain 47076 chr7 159138663 + 110972971 110973574 HERVL-int 5654 + 5029 5654 61146 32 6 11 156 0 1 75 0 7 93 0 1 36 1 2 133 0 3 27 0 4 44 chain 34228 chr7 159138663 + 110987959 110988352 L1PA5 6144 + 5751 6142 77313 60 2 0 331 chain 27753 chr7 159138663 + 111028579 111028934 THE1A 353 - 0 353 93854 119 1 0 5 1 2 25 1 0 91 1 0 111 chain 62817 chr7 159138663 + 111035919 111036721 L1PA8 5853 + 5075 5853 51533 314 27 1 130 0 1 43 1 0 39 0 5 71 1 0 61 2 1 19 1 0 93 chain 67044 chr7 159138663 + 111038277 111039269 L1PB 1623 + 633 1585 49639 170 17 21 43 5 4 435 5 1 139 1 0 7 2 1 29 2 1 5 3 0 12 7 0 15 1 0 8 52 29 22 2 0 10 chain 33102 chr7 159138663 + 111059442 111059883 MER4A1 472 + 0 472 79051 12 1 10 209 0 21 46 7 8 166 chain 242476 chr7 159138663 + 111060478 111063685 L1PA6 6164 - 15 2914 16643 31 2 0 661 1 0 140 312 0 429 3 0 224 0 1 9 6 7 191 2 3 91 7 11 647 0 3 451 chain 22085 chr7 159138663 + 111063691 111063952 L1PA6 6164 + 2977 3246 119865 187 0 8 74 chain 555881 chr7 159138663 + 111085750 111091781 L1PA2 6032 + 1 6032 738 2714 0 1 4 1 0 1981 0 2 825 2 0 504 chain 69659 chr7 159138663 + 111105588 111106401 L1PA4 6152 + 5348 6143 48545 469 0 1 80 1 0 149 19 1 95 chain 44756 chr7 159138663 + 111109134 111109624 L1PA3long 6157 - 1323 1814 62815 489 0 1 1 chain 118206 chr7 159138663 + 111109624 111110941 L1PA3long 6157 + 4840 6157 31728 842 0 2 214 1 0 110 1 0 149 chain 44064 chr7 159138663 + 111128285 111129084 L1PB1 5432 - 31 780 64143 10 2 0 21 1 0 24 61 46 4 1 0 15 1 0 44 1 0 18 1 0 51 23 17 7 1 0 6 1 0 15 0 9 11 3 0 88 0 2 8 4 0 18 25 4 28 4 0 16 12 13 274 chain 546811 chr7 159138663 + 111139877 111146036 L1PA4 6152 + 3 6151 1850 312 2 1 264 1 0 254 17 0 1195 0 1 179 2 5 472 2 1 76 0 1 607 0 1 1929 1 0 383 0 2 5 5 7 453 chain 20162 chr7 159138663 + 111154344 111154579 L1PA5 6144 + 5903 6138 126634 235 chain 27634 chr7 159138663 + 111184123 111184459 L1PA5 6144 + 5804 6141 94253 51 1 0 31 1 2 113 1 2 138 chain 9250 chr7 159138663 + 111194990 111195117 MER85 139 - 0 138 164307 29 3 14 95 chain 32256 chr7 159138663 + 111204653 111205092 MLT2A1 477 - 0 477 80430 43 18 50 61 1 0 9 0 1 140 1 5 29 0 1 53 0 1 84 chain 74760 chr7 159138663 + 111212018 111213071 MER11C 1089 - 20 1089 46131 4 0 1 144 1 0 13 1 0 4 5 6 33 30 31 95 0 1 38 1 0 4 1 5 112 48 46 215 0 4 58 13 22 233 chain 136428 chr7 159138663 + 111215474 111217716 L1MA1 4479 + 1956 4172 26759 75 14 0 52 0 1 94 5 4 412 30 18 7 0 2 30 10 51 17 8 8 29 17 15 33 1 0 66 1 0 61 94 92 99 0 5 31 2 0 17 4 0 76 1 0 12 5 0 43 10 5 79 5 1 62 3 5 60 2 0 197 1 0 24 2 0 16 1 0 71 7 6 14 2 0 13 7 6 82 9 5 97 0 3 26 1 0 20 13 11 27 7 6 9 1 0 6 9 2 13 chain 69918 chr7 159138663 + 111217789 111218570 L1PA5 6144 - 12 793 48422 781 chain 135551 chr7 159138663 + 111220973 111222562 LTR12C 1709 - 0 1709 26916 481 0 4 106 12 9 272 1 0 15 0 119 266 0 1 436 chain 12159 chr7 159138663 + 111236217 111236707 MER41A 554 - 0 480 67655 104 1 0 53 0 1 207 14 4 111 chain 89682 chr7 159138663 + 111236710 111237761 MER11C 1089 + 0 1073 39752 200 0 1 45 0 9 62 0 4 271 0 1 95 0 4 45 0 1 148 0 1 20 0 1 165 chain 1563 chr7 159138663 + 111237814 111237877 MER41A 554 - 491 554 67655 63 chain 9794 chr7 159138663 + 111243754 111243876 MER39 703 + 581 703 161624 122 chain 164117 chr7 159138663 + 111249332 111251221 SVA_D 2077 + 6 2073 22793 4 1 0 6 1 0 6 1 0 6 1 0 9 1 0 866 1 0 8 0 36 54 1 69 16 1 0 17 0 78 32 0 3 857 chain 3454 chr7 159138663 + 111263305 111263567 LTR37A 408 + 77 387 216118 19 186 234 22 2 0 6 1 3 26 chain 13137 chr7 159138663 + 111276123 111276331 MER67C 710 - 0 215 147697 9 0 5 25 15 24 123 7 0 29 chain 3973 chr7 159138663 + 111282139 111282190 LTR49 580 + 0 50 207789 11 1 0 39 chain 78823 chr7 159138663 + 111284516 111285519 LTR13 1007 + 0 1007 44136 263 0 2 116 4 5 297 26 28 30 1 0 74 2 3 149 10 9 31 chain 24912 chr7 159138663 + 111293376 111294045 THE1B 368 - 0 367 105267 182 338 22 19 1 0 86 0 15 43 chain 21709 chr7 159138663 + 111303363 111303722 THE1B 368 - 0 368 121354 116 44 54 21 1 0 107 15 6 8 0 9 47 chain 518876 chr7 159138663 + 111340005 111346704 L1PA7 6471 - 1 6466 5282 12 0 2 742 0 3 33 0 3 54 5 4 184 2 1 35 6 0 239 0 5 568 0 3 321 0 1 324 0 3 96 1 0 16 4 8 119 1 5 29 0 3 84 0 3 17 0 4 33 319 0 130 0 8 278 0 4 97 0 7 87 0 2 37 0 2 275 10 9 295 0 1 119 0 5 560 0 3 153 1 0 41 1 0 38 7 5 24 0 14 108 0 4 561 0 1 234 1 2 14 1 0 148 0 10 235 chain 2620 chr7 159138663 + 111412498 111412527 L1MB3 1562 + 1523 1552 231421 29 chain 3848 chr7 159138663 + 111478478 111478532 L1ME1 1623 + 1433 1481 209662 12 6 0 36 chain 8855 chr7 159138663 + 111490237 111490346 MER31A 484 + 146 256 166350 43 0 1 66 chain 35028 chr7 159138663 + 111494168 111494587 LTR2 463 + 0 435 76148 255 0 14 50 10 11 38 0 1 66 chain 3448 chr7 159138663 + 111498916 111498956 MLT2B1 522 + 482 522 216248 40 chain 3081 chr7 159138663 + 111499339 111499395 MLT1D 503 + 438 495 223305 28 11 12 17 chain 28995 chr7 159138663 + 111499618 111499922 AluYa5 310 - 6 310 89007 304 chain 83797 chr7 159138663 + 111520683 111521848 L1MA2 4263 + 2967 4114 41991 200 0 2 59 12 5 46 0 1 89 3 5 18 0 1 4 1 0 38 0 3 96 0 1 49 8 4 74 1 0 140 3 0 153 1 0 11 3 0 83 2 0 5 9 4 48 1 0 8 chain 60598 chr7 159138663 + 111548601 111549394 L1PA8 5853 - 0 823 52522 93 1 0 19 2 1 61 1 0 66 4 19 30 1 0 180 0 17 111 0 1 86 1 0 21 1 2 60 0 1 55 chain 24308 chr7 159138663 + 111573353 111573641 AluSc5 308 - 14 300 108615 163 1 0 25 1 0 98 chain 3839 chr7 159138663 + 111578744 111578788 MLT1C 463 + 36 80 209801 44 chain 8510 chr7 159138663 + 111579594 111579719 MER85 139 + 4 139 168244 38 0 1 36 14 23 37 chain 42522 chr7 159138663 + 111582451 111583018 LTR10A 586 + 0 574 65991 202 8 9 27 0 1 41 2 3 95 0 1 124 5 4 4 1 0 28 0 5 30 chain 565637 chr7 159138663 + 111603248 111609278 L1HS 6032 + 0 6032 180 918 1 0 121 0 3 4990 chain 23567 chr7 159138663 + 111612903 111613372 L1PB1 5432 - 42 460 112762 20 1 0 24 2 0 14 1 0 5 3 1 14 35 23 9 1 0 43 1 0 16 2 1 51 2 0 10 10 6 9 1 0 9 1 0 21 38 16 126 chain 16356 chr7 159138663 + 111658016 111658227 AluY 311 + 57 311 137320 66 6 4 78 0 45 61 chain 2499 chr7 159138663 + 111688160 111688221 L1MEc 1507 + 984 1043 233141 19 18 17 7 1 0 16 chain 3477 chr7 159138663 + 111708499 111708542 MIRb 242 + 84 127 215695 43 chain 10349 chr7 159138663 + 111762267 111762448 L1MB2 1706 - 17 189 158907 78 1 0 13 1 0 12 32 25 44 chain 96804 chr7 159138663 + 111766569 111767625 L1PA3long 6157 + 5102 6157 37612 288 1 0 767 chain 60935 chr7 159138663 + 111768310 111768982 SVA_D 2077 + 1401 2073 52371 44 1 0 253 0 2 47 0 1 317 2 0 8 chain 4144 chr7 159138663 + 111788669 111788722 Charlie4a 502 - 378 431 205330 53 chain 27366 chr7 159138663 + 111849879 111850206 L1PA6 6164 + 5832 6159 95061 327 chain 27151 chr7 159138663 + 111853066 111853418 THE1B 368 + 0 368 95755 44 0 15 113 4 3 29 1 5 87 2 0 72 chain 60097 chr7 159138663 + 111860704 111861471 LTR17 781 + 2 781 52772 325 1 0 68 20 9 267 0 1 38 5 27 31 0 1 12 chain 26767 chr7 159138663 + 111861484 111861907 MER1A 529 - 0 529 97101 58 7 21 59 16 44 41 4 5 157 0 44 8 8 12 39 11 26 15 chain 33984 chr7 159138663 + 111862778 111863216 MLT2A1 477 + 0 473 77639 169 4 1 12 0 1 21 0 1 180 19 55 33 chain 11712 chr7 159138663 + 111864249 111864431 MER30 238 - 0 201 153419 82 34 53 66 chain 3122 chr7 159138663 + 111880115 111880151 L1MA3 4352 + 44 80 222514 36 chain 12399 chr7 159138663 + 111880391 111880617 L1MA3 4352 + 4123 4347 150638 37 0 1 14 0 4 27 0 1 28 4 0 23 2 0 24 1 0 6 1 0 14 8 12 14 6 2 17 chain 14542 chr7 159138663 + 111887028 111887241 LTR56 451 + 111 326 142746 22 2 3 99 14 15 76 chain 78887 chr7 159138663 + 111889658 111890717 MER11C 1089 + 0 1073 44117 247 1 10 60 0 4 64 1 0 148 53 50 107 1 5 4 1 0 38 0 1 127 0 1 54 10 9 135 0 1 8 chain 3863 chr7 159138663 + 111918330 111918376 MADE1 96 - 50 96 209401 46 chain 8753 chr7 159138663 + 111929947 111930046 L1PA2 6032 - 1 100 166899 99 chain 28924 chr7 159138663 + 111956403 111956741 L1PA7 6471 - 786 1124 89351 64 1 0 131 0 1 142 chain 49313 chr7 159138663 + 111956750 111957374 L1PA7 6471 + 5853 6470 59513 283 5 6 139 0 1 119 11 4 60 2 0 5 chain 21805 chr7 159138663 + 111994429 111994762 L1MA5A 2387 - 192 525 121002 39 2 0 49 1 0 17 7 8 13 1 0 28 11 10 11 0 4 154 chain 15869 chr7 159138663 + 112008438 112008656 MLT2A1 477 + 0 217 138749 169 4 1 11 0 1 21 1 2 12 chain 127393 chr7 159138663 + 112057625 112059197 L1PA8 5853 + 4283 5853 28720 302 0 1 423 0 2 48 0 3 279 1 0 223 1 0 45 2 0 70 1 0 10 1 0 51 2 1 19 1 0 93 chain 7611 chr7 159138663 + 112067265 112067402 MSTD 398 - 259 396 173468 54 23 22 45 3 4 12 chain 17883 chr7 159138663 + 112110695 112110985 MER2 342 - 14 320 133156 45 8 10 49 0 8 106 1 0 19 19 25 30 2 3 11 chain 8649 chr7 159138663 + 112147244 112147380 L1PB4 2604 - 154 282 167474 43 7 1 23 7 5 56 chain 70588 chr7 159138663 + 112181717 112182497 L1PA5 6144 - 0 781 48120 521 0 1 259 chain 274432 chr7 159138663 + 112182945 112186787 L1PA10 4194 - 44 3888 14954 34 28 23 7 0 1 101 7 0 27 1 0 6 1 6 180 2 1 13 4 0 71 0 1 179 0 1 98 1 0 180 0 1 90 0 5 94 19 22 309 0 3 152 0 2 71 1 2 228 0 1 11 0 4 60 27 14 128 1 0 58 0 1 101 0 5 81 11 13 6 2 0 111 0 2 380 2 0 93 0 1 17 16 17 81 9 10 36 22 9 17 3 11 89 1 0 315 10 11 75 2 0 20 6 22 26 0 2 5 2 0 6 1 0 6 3 0 17 8 6 11 1 0 8 1 0 7 9 6 4 0 1 24 1 0 7 chain 140751 chr7 159138663 + 112191104 112192655 SVA_D 2077 + 65 2056 26031 81 4 7 735 0 83 39 0 305 37 0 49 655 chain 45372 chr7 159138663 + 112195319 112195918 LTR66 600 + 0 600 62632 161 1 0 39 0 1 202 42 10 27 0 33 127 chain 18456 chr7 159138663 + 112231171 112231399 AluSc 308 + 72 308 131625 129 8 16 91 chain 104900 chr7 159138663 + 112231405 112232912 L1PA10 4194 + 2280 3767 35528 87 0 3 206 4 9 7 5 0 15 33 17 54 4 8 93 0 4 271 1 4 70 1 2 94 3 4 30 1 2 204 1 2 13 3 0 34 6 8 71 0 1 91 31 9 74 chain 32025 chr7 159138663 + 112232966 112233363 MLT2A2 560 + 0 396 80828 183 1 0 213 chain 215511 chr7 159138663 + 112240139 112242691 L1PA7 6471 + 3165 6469 18134 596 0 407 25 0 4 131 3 0 1145 0 5 76 6 348 559 3 0 8 chain 19062 chr7 159138663 + 112252876 112253114 L1P1 4361 - 20 255 129930 12 2 1 23 1 0 157 1 0 42 chain 24292 chr7 159138663 + 112269632 112269944 AluY 311 + 0 296 108689 133 22 6 157 chain 409264 chr7 159138663 + 112281209 112286342 L1PA8A 6298 - 8 5161 9823 117 0 1 257 0 1 222 0 2 117 0 2 31 0 7 34 6 5 279 0 1 5 1 0 54 1 2 14 0 2 274 12 11 27 1 0 320 0 1 349 0 1 113 0 1 168 0 1 516 3 2 380 0 4 21 1 0 264 0 1 67 0 1 105 7 0 58 2 0 6 0 2 118 0 2 71 8 5 39 0 1 168 0 5 392 6 7 14 1 0 200 0 1 59 1 0 67 0 1 157 chain 508800 chr7 159138663 + 112296274 112303076 L1PA7 6471 - 1 6471 6259 189 1 0 200 11 1 90 0 3 269 3 2 51 36 6 42 0 3 52 2 3 312 0 1 573 0 8 81 6 7 270 0 2 170 14 15 513 0 1 173 5 12 23 317 0 140 4 0 170 6 5 420 1 0 25 1 2 129 1 2 36 6 1 695 14 16 136 1 5 229 3 2 29 1 2 404 0 1 76 15 16 105 8 7 342 17 8 141 4 14 240 chain 30140 chr7 159138663 + 112307447 112307837 LTR7 482 - 7 482 84347 154 0 2 13 0 1 28 0 31 21 0 1 73 0 50 101 chain 25089 chr7 159138663 + 112308240 112308530 AluSc5 308 - 10 304 104358 200 0 4 90 chain 17111 chr7 159138663 + 112311951 112312293 THE1D 372 + 0 330 135278 40 25 7 22 33 34 63 32 34 25 1 0 72 0 4 29 chain 5358 chr7 159138663 + 112312322 112312385 THE1C 375 - 40 103 191456 63 chain 22835 chr7 159138663 + 112318389 112318722 AluY 311 + 1 302 116419 31 24 10 91 19 1 168 chain 516236 chr7 159138663 + 112324122 112330672 L1PA7 6471 - 3 6466 5555 9 3 0 604 1 2 153 0 2 21 0 1 34 10 19 259 6 9 254 22 0 218 0 1 7 7 14 183 0 12 31 0 1 107 3 5 511 0 1 6 3 0 228 0 1 607 0 1 497 124 5 33 6 7 976 10 11 34 0 3 95 8 11 172 2 6 49 0 1 193 0 1 447 13 15 191 8 10 405 chain 198559 chr7 159138663 + 112333609 112336556 L1MA1 4479 - 289 3195 19315 14 1 0 4 6 0 7 36 30 28 2 0 18 4 5 6 1 0 121 8 5 8 1 0 98 2 0 20 1 0 71 1 0 14 3 2 25 1 0 132 0 1 70 2 0 122 3 0 43 0 12 71 3 1 11 1 0 93 2 0 88 0 11 70 14 12 19 1 0 40 9 12 30 27 16 56 1 0 29 12 10 97 10 9 49 4 9 72 1 2 10 16 0 351 4 0 44 0 3 34 0 3 98 10 11 13 2 0 8 2 1 97 17 7 161 3 1 248 0 4 137 0 3 9 chain 118988 chr7 159138663 + 112336700 112338092 SVA_C 1631 - 0 1630 31418 17 4 0 178 1 0 139 0 1 66 0 1 225 1 2 104 0 42 18 0 157 199 0 1 422 0 40 18 chain 12512 chr7 159138663 + 112352021 112352172 Tigger3c 601 + 371 522 150201 151 chain 306734 chr7 159138663 + 112356324 112359802 L1PA5 6144 - 0 3479 13141 14 1 0 99 1 0 146 1 0 74 0 1 515 0 4 520 0 1 4 1 0 1608 1 0 493 chain 38512 chr7 159138663 + 112363583 112364096 MLT2A2 560 - 0 560 71420 64 3 0 78 0 22 94 0 1 28 10 0 28 4 10 25 0 23 15 0 9 46 1 0 117 chain 217661 chr7 159138663 + 112371260 112373803 L1PA5 6144 - 8 2592 18023 46 0 13 174 28 20 728 1 0 323 0 33 94 0 1 57 0 1 338 0 1 386 2 4 240 1 0 125 chain 130704 chr7 159138663 + 112376378 112377829 L1PA3long 6157 - 7 1457 27922 1115 1 0 335 chain 31788 chr7 159138663 + 112387391 112388142 MSTA 426 + 0 426 81190 28 0 1 45 4 0 29 1 2 271 323 0 50 chain 3440 chr7 159138663 + 112390219 112390259 Tigger3c 601 + 541 581 216388 40 chain 9420 chr7 159138663 + 112394672 112394782 L1PA7 6471 - 125 235 163458 110 chain 10459 chr7 159138663 + 112394788 112394911 L1PA7 6471 + 6347 6470 158441 123 chain 177004 chr7 159138663 + 112453428 112455419 L1PA4 6152 - 174 2179 21251 21 8 0 649 0 4 226 0 6 582 0 3 129 0 4 39 0 1 154 0 4 183 chain 11131 chr7 159138663 + 112455419 112455548 L1PA4 6152 + 6007 6136 155693 129 chain 104034 chr7 159138663 + 112475831 112477510 L1PA15 4387 - 22 1731 35726 9 1 0 28 6 1 12 3 1 44 9 6 39 23 18 22 1 0 36 2 0 7 16 15 18 10 9 168 4 3 103 15 13 51 0 5 97 1 0 4 46 53 50 1 8 14 7 5 67 0 4 11 0 10 24 0 4 37 0 7 24 0 1 84 2 0 93 1 0 64 1 2 52 0 1 29 27 31 32 0 1 162 1 2 65 7 8 7 0 2 14 0 4 28 chain 29309 chr7 159138663 + 112497134 112497445 AluYb8 318 - 6 318 87521 39 0 1 272 chain 25130 chr7 159138663 + 112500676 112500990 AluY 311 + 1 305 104124 66 7 0 51 2 0 142 2 1 44 chain 24591 chr7 159138663 + 112523934 112524296 THE1C 375 - 0 359 107038 25 1 0 18 0 1 5 1 0 65 0 2 71 10 9 9 1 0 45 3 0 14 3 4 91 chain 119964 chr7 159138663 + 112524322 112525926 THE1C-int 1605 - 11 1605 31071 158 0 1 343 1 0 167 10 11 47 18 8 98 8 2 50 1 0 30 0 1 8 1 0 218 5 12 107 16 22 44 6 0 252 2 1 14 chain 25572 chr7 159138663 + 112525952 112526305 THE1C 375 - 25 375 101867 187 29 9 10 0 17 127 chain 554324 chr7 159138663 + 112556513 112564258 L1PA3long 6157 + 4 6157 907 522 4 0 100 3 0 238 0 5 707 0 1 2785 0 4 957 1 10 150 1604 0 674 chain 135061 chr7 159138663 + 112562001 112563526 SVA_D 2077 + 0 2056 27006 36 0 25 712 0 40 99 0 440 36 0 1 60 6 0 7 0 3 18 1 29 550 chain 76755 chr7 159138663 + 112588404 112589507 L1PB2 3958 - 120 1409 45103 62 2 1 22 2 0 22 13 207 69 1 0 4 3 0 10 8 6 8 0 1 51 6 0 12 1 0 46 10 8 124 0 1 260 1 0 171 2 13 23 0 1 101 16 13 53 chain 25353 chr7 159138663 + 112602070 112602340 AluY 311 + 31 302 102931 101 0 1 169 chain 46115 chr7 159138663 + 112616082 112616653 L1PA7 6471 + 5888 6467 61933 211 0 8 360 chain 67591 chr7 159138663 + 112621078 112621853 L1PA5 6144 + 5352 6129 49404 435 15 16 198 0 1 127 chain 3763 chr7 159138663 + 112640275 112640317 Tigger7 736 + 67 109 210912 42 chain 99248 chr7 159138663 + 112647654 112648912 L1PA10 4194 - 44 1288 36962 32 18 14 401 3 0 660 0 1 9 0 1 69 9 0 57 chain 126821 chr7 159138663 + 112657214 112658709 LTR12C 1709 + 0 1709 28855 211 2 0 363 3 0 145 0 118 273 1 0 8 2 0 28 2 1 77 0 4 168 0 102 129 1 0 82 chain 469196 chr7 159138663 + 112689125 112694734 L1PA7 6471 - 4 5643 8064 145 25 25 331 0 2 262 0 2 76 0 3 203 9 0 503 6 10 323 10 7 746 1 0 108 0 1 234 1 2 660 0 6 170 10 7 41 0 22 402 0 3 746 0 1 80 1 2 516 chain 116541 chr7 159138663 + 112729483 112730762 L1PA3long 6157 - 830 2109 32270 1279 chain 73804 chr7 159138663 + 112730762 112731570 L1PA3long 6157 + 5339 6147 46566 808 chain 3070 chr7 159138663 + 112743432 112743469 MLT1A0 366 - 214 250 223580 4 1 0 32 chain 4102 chr7 159138663 + 112756452 112756502 MER5A1 166 - 73 125 205920 5 0 1 34 0 1 11 chain 5919 chr7 159138663 + 112788769 112788932 L1MA3 4352 + 4202 4352 185990 17 7 5 11 2 0 24 2 0 23 8 6 20 10 9 11 1 0 4 6 3 17 chain 3378 chr7 159138663 + 112795042 112795084 L2a 937 + 734 776 217526 42 chain 48124 chr7 159138663 + 112806098 112806694 L1PA7 6471 - 12 611 60387 133 1 2 234 4 1 217 0 5 7 chain 167495 chr7 159138663 + 112834150 112836761 L1MA1 4479 - 327 2947 22334 10 1 0 36 2 0 111 2 0 37 15 11 94 1 0 8 14 12 4 1 0 74 1 0 20 2 0 15 6 5 171 1 2 22 3 0 9 0 1 47 0 1 65 11 9 125 4 0 12 1 0 7 20 18 49 4 0 20 2 0 172 2 0 14 11 10 95 1 0 9 17 15 39 32 33 102 1 0 70 1 0 54 5 17 119 0 2 28 26 25 10 0 2 88 0 1 72 0 2 63 0 3 28 1 0 170 1 2 55 49 47 60 4 6 56 15 41 32 1 2 81 chain 13985 chr7 159138663 + 112846464 112846631 L1PA5 6144 + 5972 6139 144627 167 chain 40217 chr7 159138663 + 112874485 112874957 LTR7Y 441 - 0 441 69009 272 31 0 169 chain 282744 chr7 159138663 + 112875402 112878875 HERVH-int 3825 - 63 3809 14489 162 3 8 143 1 4 6 3 0 101 8 218 39 9 11 1049 0 10 295 4 31 824 1 2 80 1 0 24 1 151 24 1 0 10 1 0 39 132 2 478 0 1 34 chain 39318 chr7 159138663 + 112878892 112879363 LTR7Y 441 - 0 441 70300 117 0 1 158 31 0 165 chain 10805 chr7 159138663 + 112882599 112882940 MSTA 426 + 29 396 156968 23 10 7 43 0 1 6 0 4 20 30 37 34 130 147 45 chain 541409 chr7 159138663 + 112897759 112903778 L1PA3long 6157 - 5 6157 2604 1358 1 0 159 1 0 747 0 1 716 1 0 2103 0 2 103 0 4 55 9 137 614 0 1 152 chain 74776 chr7 159138663 + 112909739 112910582 L1PA5 6144 + 5302 6144 46120 382 0 2 451 3 0 7 chain 13737 chr7 159138663 + 112929110 112929305 MER30 238 - 0 213 145478 109 15 33 71 chain 6073 chr7 159138663 + 112939130 112939204 L1PA4 6152 + 6069 6143 184627 74 chain 341778 chr7 159138663 + 112972351 112977841 L1PA8A 6298 + 1807 6290 11843 42 4 5 39 0 1 186 9 10 131 0 2 287 1 9 54 0 4 207 0 2 49 2 17 514 1 0 26 2 0 11 9 11 330 6 5 4 0 1 41 0 1 71 2 5 50 0 1 268 0 2 126 0 1 23 0 7 6 10 2 76 1066 0 297 0 2 330 0 3 16 0 1 106 8 16 107 10 11 166 3 1 5 0 4 80 0 1 379 0 1 11 4 3 174 0 1 141 chain 14866 chr7 159138663 + 112974942 112975123 L1PA5 6144 + 5956 6132 141730 134 5 0 42 chain 74118 chr7 159138663 + 112981572 112982532 LTR5_Hs 974 - 0 974 46449 103 20 18 19 8 15 122 0 1 40 1 0 188 0 1 177 0 1 122 1 0 39 5 13 115 chain 55987 chr7 159138663 + 112986216 112986899 L1PA7 6471 - 2 684 55126 63 1 0 74 14 0 8 2 16 521 chain 54132 chr7 159138663 + 112986905 112987538 L1PA7 6471 + 5175 5807 56273 445 2 1 186 chain 55866 chr7 159138663 + 113004029 113004674 L1P1 4361 - 3196 3841 55202 645 chain 17659 chr7 159138663 + 113021399 113021622 HSMAR1 1287 + 1 222 133808 123 3 1 97 chain 155232 chr7 159138663 + 113024793 113070043 L1PA2 6032 - 1 2493 23955 851 0 5 141 0 1 108 42764 0 1386 chain 7546 chr7 159138663 + 113068552 113068633 L1PA2 6032 - 1015 1096 173897 81 chain 93588 chr7 159138663 + 113070043 113071047 L1PA2 6032 + 5026 6030 38480 1004 chain 8894 chr7 159138663 + 113075733 113075940 L1PB1 5432 - 10 196 166163 17 8 7 7 1 0 21 1 0 26 45 31 11 1 0 6 2 0 15 1 0 45 chain 492771 chr7 159138663 + 113110112 113116404 L1PA7 6471 - 13 6467 7234 185 0 3 549 0 3 95 3 0 7 2 1 394 1 5 67 5 82 23 13 14 49 1 0 442 0 2 10 1 5 37 0 4 478 1 0 4 0 3 389 0 1 109 1 0 11 11 9 474 1 19 280 4 3 60 0 3 376 6 7 84 0 5 94 0 2 244 7 8 4 1 0 67 1 0 153 0 5 340 10 14 411 0 1 68 4 19 19 42 41 153 3 4 102 19 20 118 2 3 133 6 21 118 chain 4008 chr7 159138663 + 113127994 113128041 LTR12C 1709 - 506 553 207274 47 chain 23323 chr7 159138663 + 113131707 113131990 L1PA5 6144 + 5851 6132 114074 27 1 0 7 0 1 6 1 0 103 2 1 136 chain 46115 chr7 159138663 + 113133552 113134123 L1PA7 6471 + 5888 6467 61932 211 0 8 360 chain 73001 chr7 159138663 + 113138615 113139410 L1HS 6032 + 5237 6032 47027 795 chain 23506 chr7 159138663 + 113148106 113148400 AluSc8 310 + 10 300 113095 122 0 3 85 7 0 80 chain 20994 chr7 159138663 + 113152753 113153011 L1PA7 6471 - 3 260 123941 70 1 0 187 chain 349970 chr7 159138663 + 113153731 113157772 L1PA5 6144 - 0 4039 11607 147 3 4 706 5 12 990 10 0 96 3 0 393 0 1 4 1 0 221 0 3 64 8 7 994 0 1 396 chain 32415 chr7 159138663 + 113159621 113160012 LTR71A 459 - 68 459 80180 391 chain 64400 chr7 159138663 + 113163044 113163746 L1PA3long 6157 - 713 1415 50842 702 chain 49743 chr7 159138663 + 113163746 113164307 L1PA3long 6157 + 5597 6156 59199 418 1 0 137 1 0 4 chain 4429 chr7 159138663 + 113168485 113168669 MLT2F 649 - 1 184 201597 27 117 116 40 chain 545724 chr7 159138663 + 113173393 113179735 L1PA2 6032 + 0 6029 1986 256 1 0 485 0 1 2307 1 0 878 2 1 1304 322 0 48 0 10 591 1 2 146 chain 29077 chr7 159138663 + 113178640 113178945 AluYa8 305 + 0 305 88658 305 chain 44743 chr7 159138663 + 113207274 113207809 L1PA7 6471 + 5934 6470 63340 372 15 16 148 chain 190018 chr7 159138663 + 113212170 113214342 L1PA5 6144 + 3978 6140 20045 215 3 0 1101 0 2 5 6 2 59 7 0 83 0 2 693 chain 117466 chr7 159138663 + 113233212 113234617 LTR12C 1709 + 0 1709 31974 23 0 19 224 0 1 171 0 1 207 2 282 184 1 0 5 5 3 104 0 4 358 0 2 121 chain 7172 chr7 159138663 + 113235380 113235458 L1PA5 6144 - 12 90 176255 78 chain 234907 chr7 159138663 + 113240786 113243786 L1PA8 5853 + 2768 5853 17036 33 0 1 107 6 8 19 13 12 7 0 4 167 0 1 86 2 1 138 11 12 543 0 1 198 0 1 86 0 2 408 6 83 326 3 0 503 1 0 49 1 0 45 2 0 31 0 8 30 2 1 8 2 1 44 13 12 16 1 0 93 chain 162905 chr7 159138663 + 113258795 113260939 MER4-int 2692 - 523 2691 22950 31 0 1 106 4 7 23 2 0 112 1 0 134 0 2 4 1 0 272 6 12 59 0 16 194 7 10 84 1 0 383 4 5 431 13 13 152 20 19 12 2 6 9 3 0 36 2 0 25 1 0 10 chain 10722 chr7 159138663 + 113261781 113261927 LTR8 732 + 31 171 157309 8 6 0 132 chain 14539 chr7 159138663 + 113264603 113264800 MER4A1 472 - 0 197 142767 121 5 0 6 0 5 65 chain 42997 chr7 159138663 + 113267220 113268060 MER9a3 513 - 0 513 65415 25 1 0 108 0 2 35 329 0 217 0 1 125 chain 14285 chr7 159138663 + 113293619 113293944 THE1D 372 + 0 335 143609 12 0 3 42 55 47 62 69 84 85 chain 7282 chr7 159138663 + 113300781 113300858 L1PA2 6032 - 1298 1375 174916 77 chain 40473 chr7 159138663 + 113300858 113301297 L1PA2 6032 + 4740 5179 68631 439 chain 79464 chr7 159138663 + 113301297 113302146 L1PA2 6032 + 5180 6029 43843 849 chain 21114 chr7 159138663 + 113309821 113310154 THE1B 368 + 0 356 123516 43 1 16 110 1 0 29 36 46 43 8 7 62 chain 111802 chr7 159138663 + 113310163 113311708 THE1B-int 1605 + 0 1605 33718 136 0 1 289 0 25 78 0 3 13 5 13 232 10 28 224 3 7 84 60 0 7 26 86 310 0 1 68 chain 8247 chr7 159138663 + 113325197 113325294 MER41B 635 + 538 635 169703 97 chain 17876 chr7 159138663 + 113329850 113330241 L1PB 1623 + 1214 1576 133175 87 8 10 55 0 1 37 16 17 25 1 0 7 2 1 30 1 0 3 3 0 14 5 1 10 4 3 10 50 28 23 chain 7097 chr7 159138663 + 113336306 113336438 L1MB1 2102 - 95 227 176772 8 0 3 38 18 16 15 6 5 47 chain 72628 chr7 159138663 + 113344099 113344981 L1PA6 6164 - 5 885 47202 142 28 21 301 0 2 184 4 7 223 chain 5733 chr7 159138663 + 113348673 113348745 MER53 195 + 1 73 187814 72 chain 200079 chr7 159138663 + 113378635 113380873 L1PA3long 6157 - 1175 3415 19204 671 1 0 4 0 1 784 2 1 5 0 2 178 0 2 163 1 0 429 chain 103059 chr7 159138663 + 113380873 113382005 L1PA3long 6157 + 5001 6134 35940 345 0 1 787 chain 10560 chr7 159138663 + 113382042 113382183 THE1D 372 + 226 372 157997 12 2 8 90 2 1 35 chain 538677 chr7 159138663 + 113382960 113388955 L1PA2 6032 + 5 6009 3044 66 1 2 184 1 0 262 11 23 2507 1 0 246 2 0 883 2 1 127 0 1 1702 chain 375296 chr7 159138663 + 113396645 113400871 L1PA4 6152 + 1912 6143 10909 1093 0 1 504 1 0 841 0 4 790 0 1 997 chain 42476 chr7 159138663 + 113409965 113410786 LTR1 825 - 7 823 66039 86 0 1 115 14 0 9 0 3 20 18 22 143 0 13 28 10 0 32 54 114 18 104 10 6 1 0 15 1 15 45 13 20 23 0 12 66 chain 566988 chr7 159138663 + 113416177 113422207 L1HS 6032 - 0 6032 90 5295 0 1 663 0 1 72 chain 5416 chr7 159138663 + 113466576 113466644 MER67D 511 + 349 418 190839 61 0 1 7 chain 318660 chr7 159138663 + 113496026 113500000 L1P3 4156 + 0 3968 12643 124 4 0 117 11 11 67 4 3 84 0 3 475 16 16 151 4 5 151 0 4 374 0 2 1042 2 3 60 1 0 194 0 4 497 1 0 4 1 2 279 1 2 257 16 0 37 chain 202334 chr7 159138663 + 113500000 113502502 L1PA7 6471 + 3971 6465 19037 28 0 1 34 2 1 171 2 1 54 11 6 23 8 7 4 0 1 360 7 10 817 7 1 122 0 1 4 1 3 72 0 1 615 9 8 142 2 0 7 chain 7737 chr7 159138663 + 113504450 113504569 LTR23 429 - 297 427 172675 25 8 9 38 0 10 48 chain 5478 chr7 159138663 + 113507751 113507833 L1P1 4361 - 20 100 188958 12 2 1 23 1 0 44 chain 99162 chr7 159138663 + 113507833 113508928 L1PA4 6152 + 5048 6143 36984 1095 chain 23434 chr7 159138663 + 113510978 113511230 L1PA2 6032 + 5778 6030 113455 252 chain 28743 chr7 159138663 + 113526248 113526618 THE1B 368 + 0 368 90158 64 1 0 108 5 4 192 chain 27505 chr7 159138663 + 113568590 113568946 THE1A 353 + 0 353 94636 92 1 0 18 1 0 92 1 0 151 chain 120679 chr7 159138663 + 113568946 113570505 THE1A-int 1579 + 0 1574 30805 36 1 2 34 0 14 408 2 1 155 0 2 295 0 1 4 1 0 161 2 0 107 1 14 7 13 0 296 0 1 36 chain 27287 chr7 159138663 + 113570510 113570865 THE1A 353 + 0 353 95319 111 1 0 91 1 0 151 chain 29323 chr7 159138663 + 113573110 113573497 THE1B-int 1605 - 1199 1588 87416 332 20 21 31 0 1 4 chain 9090 chr7 159138663 + 113587104 113587290 L1PB1 5432 - 144 318 165119 8 1 0 40 10 9 10 2 1 34 1 0 18 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 chain 5038 chr7 159138663 + 113587912 113588073 L1PBb 2709 + 2454 2599 194745 21 84 69 9 1 0 46 chain 42014 chr7 159138663 + 113611145 113611682 MLT2A2 560 - 8 560 66606 139 2 13 203 0 3 137 0 1 56 chain 7630 chr7 159138663 + 113619213 113619312 L1MB5 1630 - 214 312 173350 24 1 0 74 chain 5978 chr7 159138663 + 113677416 113677485 L1PA3long 6157 - 0 70 185451 7 0 1 62 chain 120293 chr7 159138663 + 113679457 113681533 L1PA15 4387 - 23 1760 30942 10 1 0 25 22 15 41 4 0 4 1 2 50 1 0 6 6 2 24 1 0 55 1 0 23 8 7 69 0 1 32 1 0 6 0 3 57 11 0 22 1 2 13 7 5 78 2 0 149 348 38 429 1 0 28 3 2 416 8 11 112 chain 530307 chr7 159138663 + 113694997 113701124 L1PA5 6144 + 0 6144 4150 142 1 2 199 0 2 1050 14 14 1168 0 1 664 0 1 4 2 1 1532 0 2 562 0 6 490 1 4 18 0 1 126 0 1 154 chain 119844 chr7 159138663 + 113716045 113717460 LTR12C 1709 - 7 1709 31107 77 5 4 393 0 4 106 9 6 104 0 278 286 0 8 192 0 1 243 chain 27031 chr7 159138663 + 113774504 113774788 AluYa5 310 + 18 302 96182 284 chain 6141 chr7 159138663 + 113777814 113778214 L1MC3 1789 + 914 1439 184066 15 0 12 20 84 79 17 20 37 24 93 262 11 67 0 24 1 0 24 chain 9831 chr7 159138663 + 113786241 113786363 MER85 139 - 13 135 161443 122 chain 42186 chr7 159138663 + 113795205 113796781 MER4D1 891 + 0 865 66414 41 0 1 7 1 2 10 3 0 55 4 5 23 0 1 72 0 2 163 833 106 30 21 22 58 0 5 52 57 53 54 35 45 18 0 1 39 chain 4454 chr7 159138663 + 113807471 113807523 Tigger1 2417 + 54 106 201303 52 chain 25358 chr7 159138663 + 113809763 113810125 THE1B 368 + 0 368 102899 19 2 0 10 7 13 64 1 2 62 9 8 57 0 2 131 chain 2418 chr7 159138663 + 113847281 113847316 L1MB7 1623 - 194 230 234063 6 1 0 11 0 2 17 chain 45218 chr7 159138663 + 113848072 113848635 THE1B-int 1605 + 1045 1605 62808 88 3 0 472 chain 27104 chr7 159138663 + 113848639 113849004 THE1B 368 + 4 368 95930 103 3 4 63 1 0 18 4 0 92 0 2 37 0 1 44 chain 7471 chr7 159138663 + 113877619 113877703 MER51A 677 + 528 612 174340 84 chain 9159 chr7 159138663 + 113887905 113888499 MLT2B4 540 - 0 540 164772 34 442 389 13 0 2 12 0 1 21 1 0 52 3 0 16 chain 526929 chr7 159138663 + 113889867 113895988 L1PA5 6144 - 12 6144 4511 319 0 3 485 7 3 27 6 9 323 5 6 607 0 8 162 1 0 447 2 1 789 11 12 1120 1 0 141 0 1 641 0 1 300 3 4 278 6 4 233 0 1 207 chain 19677 chr7 159138663 + 113896804 113897066 L1PA10 4194 + 3889 4150 128176 25 1 2 194 9 7 33 chain 14538 chr7 159138663 + 113906167 113906338 MSTA-int 1630 - 1433 1604 142775 171 chain 14916 chr7 159138663 + 113927201 113927392 MER30 238 - 0 199 141586 48 3 0 69 4 15 67 chain 22556 chr7 159138663 + 113959478 113959798 THE1B 368 - 44 366 117781 141 12 11 129 1 6 18 2 0 17 chain 10395 chr7 159138663 + 113973535 113973661 AluSz 310 + 10 136 158716 126 chain 18252 chr7 159138663 + 113990198 113990443 L1PA8 5853 - 0 243 132195 93 1 0 16 1 0 42 0 2 5 3 2 12 1 0 71 chain 6190 chr7 159138663 + 113992742 113992843 MLT1B 390 - 252 353 183652 35 0 11 8 15 4 43 chain 3238 chr7 159138663 + 114000000 114000034 THE1B-int 1605 + 1560 1594 220290 34 chain 15692 chr7 159138663 + 114000044 114000346 THE1B 368 + 0 306 139296 131 94 99 12 1 0 64 chain 26935 chr7 159138663 + 114019142 114019469 LTR17 781 - 455 781 96500 17 10 0 181 0 9 119 chain 381064 chr7 159138663 + 114019783 114024302 HERV17-int 4347 - 0 4335 10723 1575 0 1 791 1 2 363 0 1 137 1 0 172 0 1 106 0 1 1058 1 0 25 2 0 36 1 0 40 183 0 11 1 0 15 chain 43564 chr7 159138663 + 114025831 114026364 LTR17 781 - 0 525 64726 9 1 2 442 0 1 18 10 0 53 chain 16709 chr7 159138663 + 114083827 114084093 L1PA15 4387 - 73 328 136383 41 9 6 51 1 0 8 4 0 23 1 0 53 2 1 26 2 1 45 chain 119553 chr7 159138663 + 114093795 114095087 L1PA2 6032 + 4740 6032 31198 1292 chain 254865 chr7 159138663 + 114130573 114133413 L1PA4 6152 - 12 3952 15991 1157 0 1097 1306 0 3 377 chain 62770 chr7 159138663 + 114150699 114151419 L1PA7 6471 + 5748 6467 51551 234 0 1 478 2 0 6 chain 99309 chr7 159138663 + 114154778 114155865 L1PA3long 6157 - 0 1091 36950 48 0 4 1039 chain 59733 chr7 159138663 + 114155865 114156528 L1PA3long 6157 + 4396 5059 52821 663 chain 31195 chr7 159138663 + 114227128 114227593 L1PA8 5853 - 0 427 82170 92 2 1 19 2 1 52 2 1 8 1 0 71 34 1 43 2 1 137 chain 7291 chr7 159138663 + 114238690 114238794 L1MB2 1706 - 18 120 175501 77 1 0 11 3 2 12 chain 7663 chr7 159138663 + 114345109 114345206 LTR32 486 - 196 293 173145 97 chain 24826 chr7 159138663 + 114372269 114372630 THE1B 368 + 0 366 105737 39 0 1 4 6 20 108 1 0 28 2 0 94 20 13 59 chain 21930 chr7 159138663 + 114389306 114389576 L1PA7 6471 - 6 276 120500 270 chain 48642 chr7 159138663 + 114402640 114403258 L1PA8 5853 - 1467 2098 59935 45 2 1 477 9 23 85 chain 108369 chr7 159138663 + 114403258 114404635 L1PA8 5853 + 4481 5853 34599 296 0 6 223 2 0 3 2 0 75 3 4 344 1 0 89 1 0 43 1 0 44 2 0 65 10 9 6 1 0 52 2 1 19 1 0 78 0 1 14 chain 12582 chr7 159138663 + 114413083 114413240 L1PA6 6164 - 2 155 149913 54 4 0 99 chain 71672 chr7 159138663 + 114456730 114457621 L1PA7 6471 + 5569 6465 47616 45 0 3 522 0 1 106 0 1 38 1 0 22 8 9 149 chain 25532 chr7 159138663 + 114465386 114465744 THE1D 372 - 6 372 102091 26 1 0 146 25 34 160 chain 26175 chr7 159138663 + 114478152 114478461 AluY 311 + 2 310 99299 131 1 0 177 chain 14698 chr7 159138663 + 114490032 114490396 THE1D 372 + 0 372 142273 26 53 54 20 17 16 44 29 80 7 44 0 25 0 1 99 chain 302384 chr7 159138663 + 114532065 114536465 L1PA8 5853 - 0 4142 13303 57 4 12 23 2 1 19 2 1 38 14 23 71 5 3 40 2 1 168 0 2 246 1 0 19 13 23 454 0 1 131 5 0 10 1 6 94 22 6 64 2 0 15 1 0 15 0 1 174 13 3 66 6 10 285 10 27 239 2 1 111 1 2 64 0 1 10 9 11 84 1 0 229 0 1 58 0 4 20 4 3 24 0 1 170 306 0 24 0 4 21 9 8 4 0 1 52 1 0 5 0 1 106 0 4 63 1 0 4 5 0 321 0 3 84 5 23 263 0 1 8 chain 37728 chr7 159138663 + 114541707 114542254 MLT2A2 560 - 2 560 72520 140 1 12 140 11 12 46 40 39 169 chain 4328 chr7 159138663 + 114543398 114543448 MLT2A1 477 - 0 50 202858 50 chain 145175 chr7 159138663 + 114544259 114546009 HERVL-int 5654 - 0 1749 25296 74 0 3 146 0 1 198 10 7 854 3 0 363 0 1 102 chain 3125 chr7 159138663 + 114546025 114546061 MLT2A1 477 + 363 399 222457 36 chain 492321 chr7 159138663 + 114630406 114636011 L1PA5 6144 - 0 6144 7254 146 8 10 1694 0 1 374 0 1 379 7 5 498 0 1 125 0 4 12 6 4 1223 0 2 227 0 1 388 0 2 421 0 4 6 0 525 91 chain 545906 chr7 159138663 + 114665168 114671169 L1PA2 6032 - 18 6032 1957 142 2 1 89 0 2 453 0 1 153 0 1 1577 0 10 676 0 1 266 0 1 2385 1 0 102 1 0 154 chain 98850 chr7 159138663 + 114715801 114716978 L1PA7 6471 - 13 1193 37061 321 0 1 515 1 0 110 0 2 80 0 1 150 chain 46753 chr7 159138663 + 114724289 114724823 L1PA5 6144 + 5606 6141 61411 389 1 2 144 chain 2834 chr7 159138663 + 114760142 114760178 L1MA5A 2387 - 12 47 228162 16 1 0 19 chain 119164 chr7 159138663 + 114802439 114803977 THE1B-int 1605 - 5 1567 31350 208 4 0 343 15 12 94 0 3 49 0 2 189 23 24 220 2 27 391 chain 536351 chr7 159138663 + 114807827 114813842 L1PA3long 6157 - 0 6157 3402 5 0 2 672 1 0 156 0 1 7 0 4 514 1 3 1530 0 6 441 0 1 1769 1 0 142 9 137 20 0 1 435 8 6 152 0 1 152 chain 48651 chr7 159138663 + 114823988 114824556 L1P1 4361 - 1616 2189 59991 320 0 3 115 0 2 133 chain 101861 chr7 159138663 + 114827327 114828576 L1PA8A 6298 - 9 1272 36296 102 1 8 171 1 0 63 0 3 60 0 2 310 0 2 454 0 1 87 chain 94229 chr7 159138663 + 114887003 114888298 L1PA8 5853 - 0 1602 38285 93 1 0 16 6 5 49 17 15 65 4 2 86 2 1 163 0 1 264 8 321 157 1 0 228 17 18 118 chain 273005 chr7 159138663 + 114901294 114904265 L1PA2 6032 - 0 2988 15018 89 0 12 43 0 1 105 0 2 855 0 1 1372 0 1 507 chain 52384 chr7 159138663 + 114915780 114916408 L1PA7 6471 - 12 649 57368 87 0 3 102 0 3 221 0 2 134 6 7 78 chain 141518 chr7 159138663 + 114919936 114921538 L1PA5 6144 - 4 1606 25897 846 1 0 257 0 1 498 chain 36285 chr7 159138663 + 114968186 114968695 MLT2A2 560 - 0 547 74524 58 0 1 36 22 32 16 0 11 208 13 29 156 chain 162020 chr7 159138663 + 115001167 115003114 L1PA7 6471 - 2 1946 23060 748 12 11 89 1 0 473 2 1 198 8 7 56 0 1 360 chain 49929 chr7 159138663 + 115041494 115042080 L1PA7 6471 + 5858 6450 59071 463 1 7 122 chain 9201 chr7 159138663 + 115046427 115046538 UCON28a 235 + 44 155 164551 111 chain 6621 chr7 159138663 + 115074200 115074498 L1MA8 2339 - 75 341 180294 8 1 0 28 189 157 11 0 2 49 1 0 11 chain 25925 chr7 159138663 + 115079523 115079799 AluYa5 310 - 0 276 100320 276 chain 45988 chr7 159138663 + 115106673 115107226 L1PA7 6471 + 5912 6467 62051 182 0 1 190 1 2 180 chain 16761 chr7 159138663 + 115163142 115163390 MLT2A1 477 - 222 477 136227 77 9 13 24 0 1 43 12 14 83 chain 193027 chr7 159138663 + 115163390 115165805 HERVL-int 5654 - 0 2412 19768 73 0 2 204 1 0 4 0 1 135 1 2 8 1 2 219 0 1 181 0 1 5 1 0 422 10 0 120 1 2 574 8 9 447 chain 21023 chr7 159138663 + 115176514 115176761 L1PA7 6471 + 6208 6455 123839 247 chain 8182 chr7 159138663 + 115177360 115177474 MER85 139 + 14 139 170055 15 4 5 56 0 10 39 chain 47461 chr7 159138663 + 115197240 115197810 L1PA7 6471 - 1 573 60860 4 1 0 8 0 2 323 1 2 233 chain 30195 chr7 159138663 + 115223710 115224113 LTR2 463 + 0 463 84203 282 33 93 88 chain 380542 chr7 159138663 + 115225728 115231105 L1PB1 5432 + 74 5420 10737 524 0 3 5 0 3 32 3 21 33 0 3 179 3 5 88 2 0 6 17 19 248 3 7 121 0 3 20 1 0 8 2 0 5 26 11 28 0 5 360 1 0 320 0 71 290 5 0 8 0 7 54 0 1 40 32 18 220 14 16 49 65 67 35 3 4 273 12 14 321 1 2 107 1 4 150 8 0 738 1 0 7 2 0 295 1 16 108 0 1 5 1 0 51 2 0 11 94 0 24 1 0 9 19 14 8 2 0 51 2 1 16 1 0 44 2 1 14 1 0 4 21 9 15 11 8 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 482399 chr7 159138663 + 115233877 115239777 L1PA6 6164 + 2 6162 7646 326 8 9 73 0 1 6 12 11 125 0 232 158 0 6 7 5 0 56 0 1 249 8 5 65 0 1 173 2 1 242 4 6 570 4 0 72 0 4 180 1 5 603 0 1 332 1 2 651 4 10 355 0 1 269 2 0 32 0 3 276 0 1 193 5 15 222 1 2 608 chain 34119 chr7 159138663 + 115273972 115274428 L1PA8 5853 + 5395 5853 77450 60 0 2 105 1 0 38 5 10 69 2 1 60 2 1 12 1 0 7 1 0 93 chain 40106 chr7 159138663 + 115351435 115351897 L1PA7 6471 - 350 812 69169 462 chain 25790 chr7 159138663 + 115351897 115352204 L1PA7 6471 + 6148 6460 100911 51 0 4 183 0 1 73 chain 13919 chr7 159138663 + 115372958 115373176 L1PA8 5853 + 5639 5853 144859 40 1 0 9 5 0 10 0 4 38 2 1 15 7 6 91 chain 116160 chr7 159138663 + 115377910 115379186 L1PA3long 6157 + 4881 6156 32392 1127 1 0 148 chain 36788 chr7 159138663 + 115399344 115399745 L1PA2 6032 + 5630 6032 73810 256 0 1 145 chain 15408 chr7 159138663 + 115420983 115421160 L1PREC2 3366 - 1595 1772 140176 177 chain 6119 chr7 159138663 + 115429446 115429831 LTR12D 1347 - 174 874 184289 35 185 363 16 1 0 23 86 224 39 chain 29208 chr7 159138663 + 115469454 115469759 AluYa5 310 - 5 310 88010 305 chain 38883 chr7 159138663 + 115477967 115478412 L1PA5 6144 - 9 464 70891 190 0 9 69 0 1 186 chain 27559 chr7 159138663 + 115478417 115478729 L1PA5 6144 + 5360 5672 94471 312 chain 294426 chr7 159138663 + 115529865 115533522 L1PA7 6471 + 2781 6464 13739 194 8 11 551 7 11 565 15 16 257 1 0 292 0 2 11 7 9 96 0 1 45 0 3 652 4 1 112 4 7 81 6 8 260 0 1 42 0 2 87 0 1 34 1 0 84 6 10 229 0 2 6 chain 184106 chr7 159138663 + 115568623 115570722 L1PA5 6144 + 4022 6127 20581 1002 4 5 268 0 4 751 1 2 73 chain 80265 chr7 159138663 + 115586978 115587873 L1PA3long 6157 - 1 899 43486 39 0 1 269 0 1 545 0 1 42 chain 191256 chr7 159138663 + 115587884 115590004 L1PA3long 6157 + 3126 5246 19937 1999 1 0 4 0 1 116 chain 23192 chr7 159138663 + 115602915 115603195 L1PA6 6164 - 6 287 114712 46 0 1 234 chain 7772 chr7 159138663 + 115626678 115626769 L1PA5 6144 + 5860 5951 172467 91 chain 16869 chr7 159138663 + 115626781 115626964 L1PA5 6144 + 5952 6135 135916 183 chain 512056 chr7 159138663 + 115629333 115635409 L1PA5 6144 + 0 6144 5974 121 0 14 163 1 23 114 70 67 559 0 1 107 9 0 254 0 2 390 7 8 66 0 4 38 0 1 412 0 1 137 0 18 220 5 6 625 0 3 481 2 0 668 0 2 865 4 15 80 1 0 524 0 2 153 chain 21443 chr7 159138663 + 115644880 115645224 THE1B 368 + 0 368 122359 44 10 25 98 6 5 20 41 51 125 chain 21577 chr7 159138663 + 115646800 115647128 THE1B 368 + 0 353 121857 44 0 15 48 0 1 67 1 0 23 35 45 110 chain 95990 chr7 159138663 + 115685073 115686293 THE1A-int 1579 + 10 1574 37824 161 1 2 5 1 0 209 7 300 49 0 32 310 16 33 95 0 1 187 0 1 179 chain 281808 chr7 159138663 + 115687101 115690443 L1PA5 6144 + 0 3387 14545 121 0 14 18 3 15 644 2 19 24 0 1 274 5 15 21 13 4 876 0 1 266 1 2 204 0 1 638 3 0 229 chain 78017 chr7 159138663 + 115690462 115691346 L1PA5 6144 + 5245 6129 44503 884 chain 23188 chr7 159138663 + 115702440 115702889 L1PB1 5432 - 151 572 114736 45 1 0 15 2 1 48 118 89 17 0 1 23 1 0 174 0 3 5 chain 13733 chr7 159138663 + 115704599 115704766 L1PA8 5853 + 5688 5853 145495 54 1 0 18 1 0 93 chain 3521 chr7 159138663 + 115713518 115713561 L1PA8 5853 - 0 43 215045 43 chain 26398 chr7 159138663 + 115730850 115731174 L1PA7 6471 + 6139 6466 98417 128 5 6 40 0 1 137 0 1 14 chain 114699 chr7 159138663 + 115748998 115750281 L1PA5 6144 + 4854 6135 32884 611 1 0 351 6 5 314 chain 25227 chr7 159138663 + 115787463 115787742 L1PA5 6144 - 3 282 103605 279 chain 4663 chr7 159138663 + 115796011 115796074 MER96B 391 + 278 338 198929 13 3 0 47 chain 95644 chr7 159138663 + 115821181 115822529 LTR12C 1709 - 0 1709 37919 84 13 12 214 5 4 18 1 0 65 2 1 83 44 13 84 0 47 123 0 278 210 0 3 7 11 0 63 3 4 17 0 43 41 0 25 73 3 4 163 0 9 21 chain 17345 chr7 159138663 + 115835674 115836013 Tigger3b 1229 - 0 346 134673 18 44 46 35 22 23 83 9 13 48 1 0 4 1 2 74 chain 14387 chr7 159138663 + 115837802 115838033 MER30 238 + 0 238 143240 98 1 2 9 2 0 11 17 28 51 7 4 35 chain 28296 chr7 159138663 + 115883841 115884185 THE1C 375 - 28 375 91960 141 0 3 203 chain 12617 chr7 159138663 + 115917682 115917867 L1PREC2 3366 - 2879 3062 149786 18 1 0 49 16 15 101 chain 28708 chr7 159138663 + 115917929 115918394 L1PA15 4387 + 3893 4356 90302 40 1 0 170 2 1 26 1 0 55 1 0 23 0 11 37 29 26 32 27 21 21 chain 56553 chr7 159138663 + 115930136 115930779 L1PA5 6144 - 5 646 54821 133 1 0 443 1 0 65 chain 16571 chr7 159138663 + 115938285 115938618 THE1B 368 + 0 338 136731 81 1 2 25 31 32 34 61 66 66 2 0 32 chain 21694 chr7 159138663 + 115967009 115967408 L1PA15 4387 - 21 401 121414 10 1 0 25 5 0 10 10 7 44 6 3 50 1 0 10 4 0 22 1 0 25 41 40 16 1 0 58 1 2 58 chain 5705 chr7 159138663 + 115987595 115987687 LOR1b 457 - 23 114 188058 11 7 0 6 3 9 65 chain 545991 chr7 159138663 + 116011305 116017443 L1PA4 6152 + 0 6152 1944 145 0 2 1097 2 1 1197 0 1 101 0 2 631 2 0 399 0 1 358 6 5 1360 0 1 263 0 12 571 1 0 5 chain 56774 chr7 159138663 + 116031739 116032442 L1PA8 5853 + 5156 5853 54669 408 1 0 41 5 3 71 1 0 61 2 1 19 2 1 92 chain 7978 chr7 159138663 + 116047656 116047741 L1PA2 6032 - 3 88 171187 85 chain 543931 chr7 159138663 + 116048914 116054928 L1PA3long 6157 + 0 6156 2222 152 0 1 615 8 136 141 0 1 697 0 2 2209 0 1 338 0 2 59 0 4 832 0 3 963 chain 18488 chr7 159138663 + 116068979 116069175 L1PA3long 6157 - 2 198 131540 196 chain 7136 chr7 159138663 + 116075757 116075848 L1PREC2 3366 - 815 907 176507 39 0 1 52 chain 9815 chr7 159138663 + 116096022 116096127 LTR7 482 + 377 482 161517 105 chain 288675 chr7 159138663 + 116096135 116099596 HERVH-int 3825 + 16 3825 14110 356 0 1 116 2 0 11 24 80 20 5 56 42 2 1 30 1 0 50 1 0 180 0 24 702 4 31 403 29 12 702 3 1 236 9 11 39 8 218 139 1 0 123 0 2 223 chain 25696 chr7 159138663 + 116100796 116101190 LTR7 482 + 0 442 101300 138 21 28 10 25 35 10 1 2 31 2 0 11 0 31 9 0 1 136 chain 128529 chr7 159138663 + 116113293 116116178 L1PB1 5432 + 3510 5423 28442 222 2 0 87 0 4 169 12 11 50 13 22 181 318 4 39 8 6 82 0 1 234 5 10 73 0 2 354 8 8 34 18 9 26 1 0 4 32 26 45 5 9 15 2 1 34 649 8 14 25 14 18 10 7 13 2 0 24 1 0 22 1 0 12 1 0 15 1 0 4 chain 54270 chr7 159138663 + 116115366 116115972 L1PA5 6144 + 5523 6128 56181 308 1 0 297 chain 116951 chr7 159138663 + 116119559 116120875 L1PA5 6144 - 14 1336 32143 239 1 3 587 0 4 489 chain 32976 chr7 159138663 + 116124341 116124725 L1PA7 6471 - 6 396 79253 216 0 6 168 chain 22117 chr7 159138663 + 116128744 116129004 AluY 311 + 39 300 119717 87 0 1 173 chain 12896 chr7 159138663 + 116178749 116179096 THE1B 368 - 0 368 148647 37 22 20 4 0 1 63 7 15 14 0 1 4 105 104 22 10 24 59 chain 23769 chr7 159138663 + 116227332 116227692 L1PA8 5853 + 5408 5767 111656 71 13 13 72 1 0 43 3 1 63 2 0 5 0 1 29 0 5 29 2 1 19 1 0 7 chain 4484 chr7 159138663 + 116230657 116230713 L1MA4 2864 - 63 117 200974 34 2 0 20 chain 6710 chr7 159138663 + 116240291 116240375 MLT2D 439 + 1 85 179609 84 chain 21893 chr7 159138663 + 116248858 116249108 L1PA7 6471 + 6207 6457 120651 250 chain 4940 chr7 159138663 + 116262825 116262897 MADE1 96 - 2 91 195795 24 0 1 19 1 17 28 chain 95970 chr7 159138663 + 116278211 116279405 SVA_A 1864 + 10 1644 37829 5 1 0 10 4 0 476 0 40 75 2 0 36 3 0 37 3 0 113 3 0 30 1 0 1 0 3 39 41 455 105 0 2 103 2 0 104 chain 4448 chr7 159138663 + 116329503 116329561 MER53 195 + 108 165 201359 20 1 0 37 chain 553324 chr7 159138663 + 116358551 116364543 L1PA2 6032 - 6 6026 1034 846 0 4 783 0 5 1360 0 1 14 0 1 746 0 4 1350 1 0 677 0 14 215 chain 17461 chr7 159138663 + 116365580 116365796 Tigger3a 397 - 29 245 134358 216 chain 502578 chr7 159138663 + 116382997 116391531 L1PA7 6471 + 6 6365 6692 270 24 25 90 0 7 5 0 1 267 5 198 692 4 3 26 0 1 520 2100 0 309 0 14 205 0 2 441 0 16 53 320 0 59 39 0 62 14 8 93 0 1 119 0 19 179 0 1 239 2 1 68 2 0 774 0 3 10 0 25 529 1 0 132 0 5 144 0 7 211 1 0 525 chain 182972 chr7 159138663 + 116384919 116386987 L1PA5 6144 + 4068 6139 20686 1224 3 4 733 0 1 37 0 1 71 chain 52377 chr7 159138663 + 116460781 116461545 L1PA15 4387 - 81 827 57376 34 9 6 49 2 1 10 4 0 21 1 0 55 1 0 26 2 1 171 10 9 14 0 2 15 3 1 60 4 0 19 2 0 252 chain 70122 chr7 159138663 + 116461561 116462448 L1PA7 6471 - 5 894 48344 79 0 4 73 4 1 373 3 4 94 1 0 136 0 2 70 12 11 42 chain 22390 chr7 159138663 + 116470614 116470888 AluSg4 309 + 0 288 118536 14 3 17 257 chain 6116 chr7 159138663 + 116501985 116502062 L1PB2 3958 - 130 206 184303 53 1 0 23 chain 8336 chr7 159138663 + 116532608 116532786 MER30 238 - 0 238 169197 21 1 11 7 3 0 41 0 6 27 15 44 20 21 39 22 chain 3229 chr7 159138663 + 116543375 116543409 U2 167 + 0 34 220428 34 chain 27005 chr7 159138663 + 116554079 116554382 AluYk4 311 - 10 311 96267 175 2 0 126 chain 10195 chr7 159138663 + 116601036 116601608 L1PREC2 3366 - 345 871 78170 11 3 1 38 41 24 15 0 1 5 74 59 13 3 0 4 1 0 42 15 7 26 0 1 22 2 0 257 chain 73586 chr7 159138663 + 116601834 116602840 L1PA8 5853 - 0 997 46742 93 1 0 19 2 1 38 3 2 12 1 0 9 1 0 71 2 0 36 0 3 5 4 0 49 9 8 149 0 1 46 3 0 62 0 1 160 1 3 74 3 1 55 5 6 93 chain 1426 chr7 159138663 + 116602844 116602924 L1PREC2 3366 - 1037 1118 78170 53 0 1 27 chain 13655 chr7 159138663 + 116605418 116605630 L1PA8 5853 + 5649 5853 145758 32 1 0 6 4 3 52 1 0 16 5 4 24 12 8 59 chain 4981 chr7 159138663 + 116610790 116610851 MER89 557 - 488 549 195345 61 chain 8637 chr7 159138663 + 116624309 116624410 MSTC 436 + 335 436 167555 101 chain 24784 chr7 159138663 + 116631359 116633622 THE1A 353 - 0 353 105973 259 1909 0 46 0 1 34 2 0 13 chain 5099 chr7 159138663 + 116631635 116631714 THE1A 353 - 275 353 194096 23 7 8 34 2 0 13 chain 16951 chr7 159138663 + 116633267 116633526 THE1A 353 - 0 259 135729 187 1 0 4 43 43 6 0 1 18 chain 121655 chr7 159138663 + 116637021 116638615 LTR12C 1709 - 0 1709 30495 77 6 5 96 0 102 200 45 14 90 0 47 241 1 0 318 0 1 4 1 0 46 5 4 464 chain 11215 chr7 159138663 + 116698809 116698963 L1MA2 4263 + 3968 4114 155367 90 8 1 46 1 0 9 chain 24176 chr7 159138663 + 116720023 116720278 AluYa5 310 - 0 255 109341 255 chain 43188 chr7 159138663 + 116741285 116741834 HERVL-int 5654 - 5049 5604 65188 124 0 3 31 1 0 103 5 9 285 chain 13025 chr7 159138663 + 116745197 116745371 L1MA4 2864 + 2516 2692 148156 10 0 3 124 0 2 16 3 0 21 chain 28795 chr7 159138663 + 116746034 116746351 AluYb8 318 - 1 318 89919 317 chain 142253 chr7 159138663 + 116746976 116749330 L1PB1 5432 - 151 2139 25765 13 1 0 32 1 0 15 2 4 39 32 26 6 1 0 12 90 55 176 1 3 102 0 1 89 2 3 41 3 0 10 324 0 457 1 0 154 2 3 71 8 7 241 7 1 192 2 1 124 0 6 85 0 1 18 chain 53670 chr7 159138663 + 116749336 116750062 L1PB1 5432 + 2532 3279 56569 237 15 34 39 1 0 81 6 10 50 2 1 5 0 1 107 1 0 182 chain 3622 chr7 159138663 + 116758250 116758291 Tigger4a 237 - 191 232 213316 41 chain 4804 chr7 159138663 + 116783978 116784373 Charlie1b 519 - 4 451 197320 23 54 70 16 1 0 20 9 0 8 214 258 18 9 11 23 chain 17600 chr7 159138663 + 116807129 116807335 L1PA3long 6157 - 0 208 133998 5 0 2 201 chain 27718 chr7 159138663 + 116842015 116842315 AluYa5 310 - 12 310 93980 166 2 0 132 chain 140699 chr7 159138663 + 116874940 116876835 L1MA2 4263 - 149 2032 26038 10 1 0 46 22 15 77 1 0 9 2 1 150 3 0 144 1 0 75 7 3 18 1 0 69 1 0 5 0 2 586 0 2 132 9 10 76 5 0 39 2 0 101 2 5 83 1 0 22 0 5 154 14 17 27 chain 3741 chr7 159138663 + 116884071 116884115 L1MB1 2102 + 480 524 211311 44 chain 26632 chr7 159138663 + 116885799 116886153 THE1B 368 - 2 368 97550 73 1 0 121 11 9 95 9 24 44 chain 7128 chr7 159138663 + 116886174 116886286 L1MB1 2102 + 1885 2008 176556 34 1 2 18 9 19 50 chain 6244 chr7 159138663 + 116912205 116912388 MER20 218 + 0 159 183218 14 37 21 4 1 0 38 23 19 12 4 0 38 2 3 10 chain 333033 chr7 159138663 + 116982805 116987686 L1PB1 5432 - 10 5404 12088 18 1 0 12 2 1 21 1 0 23 3 1 14 1 0 8 2 0 11 9 0 11 2 0 5 2 1 15 0 15 29 1 0 16 2 1 52 2 0 7 7 3 12 1 0 8 1 0 24 21 19 43 1 0 5 0 1 8 11 8 36 0 3 227 4 5 54 0 2 82 3 0 12 0 2 543 7 17 62 0 1 40 0 1 39 4 5 27 0 20 86 2 1 42 3 11 486 4 16 129 2 3 180 19 8 48 2 0 122 3 32 103 0 1 91 5 0 42 0 1 4 1 0 20 0 1 2 0 395 261 0 1 92 0 5 33 4 5 211 31 34 152 4 1 104 0 1 29 1 2 73 5 6 66 0 1 34 0 1 119 0 1 13 1 0 5 6 16 178 80 84 98 7 31 22 9 17 26 1 0 133 34 34 26 23 33 52 chain 59456 chr7 159138663 + 117054542 117055276 L1PA7 6471 - 3 727 53139 87 0 1 224 0 1 231 9 1 169 4 0 10 chain 2724 chr7 159138663 + 117069447 117069508 L2a 937 - 695 754 229801 24 14 13 17 1 0 5 chain 45126 chr7 159138663 + 117072662 117073299 L1PA11 4918 + 3866 4507 62902 286 1 3 122 1 0 4 0 1 8 20 24 20 0 1 17 1 0 43 1 0 10 14 15 54 1 0 15 1 0 18 chain 29228 chr7 159138663 + 117081546 117081854 AluYa5 310 - 2 310 87917 308 chain 254702 chr7 159138663 + 117091200 117095063 L1MA2 4263 + 169 4100 16000 38 7 0 43 2 1 14 0 1 67 1 0 6 0 4 138 0 6 146 1 0 38 0 4 74 56 6 47 28 0 229 9 19 7 10 0 68 0 2 189 5 6 12 0 4 110 0 4 30 0 1 51 11 15 18 0 3 7 12 4 32 1 2 404 9 13 21 10 11 159 24 25 162 1 5 141 0 4 9 7 20 56 2 0 32 7 13 61 10 14 46 0 103 57 1 3 112 0 5 9 14 0 30 16 17 22 0 4 281 1 5 16 6 1 76 1 5 23 6 5 14 0 1 58 26 25 18 2 0 92 18 15 62 0 5 83 19 17 83 7 0 17 1 4 16 3 0 5 chain 21899 chr7 159138663 + 117096215 117096501 AluSc5 308 - 22 297 120626 160 14 3 112 chain 31687 chr7 159138663 + 117100737 117101098 L1PA5 6144 - 6 372 81342 84 0 5 277 chain 60479 chr7 159138663 + 117101936 117102691 L1PA7 6471 - 23 769 52592 97 7 0 108 0 1 78 0 1 26 2 0 339 15 13 83 chain 98900 chr7 159138663 + 117102717 117103889 L1PA7 6471 + 4487 5673 37050 86 1 0 5 0 1 97 0 4 67 1 0 87 0 2 359 0 4 273 10 16 133 1 0 52 chain 24022 chr7 159138663 + 117106065 117106360 AluSg7 307 + 10 306 110209 121 0 1 174 chain 138531 chr7 159138663 + 117154267 117156021 L1PA8A 6298 - 9 1774 26389 40 0 1 55 11 12 633 0 3 36 9 14 369 1 0 297 7 4 6 0 3 102 13 14 159 5 6 11 chain 73635 chr7 159138663 + 117157219 117158088 L1PA7 6471 - 107 982 46715 208 0 1 125 1 4 6 3 0 318 0 2 83 0 3 125 chain 86309 chr7 159138663 + 117165286 117166212 L1HS 6032 - 3355 4281 40936 926 chain 315954 chr7 159138663 + 117166212 117169583 L1HS 6032 + 2661 6032 12766 3371 chain 23619 chr7 159138663 + 117185052 117185411 THE1B 368 - 0 368 112478 118 48 58 23 1 0 169 chain 14863 chr7 159138663 + 117192931 117193269 MLT1A0 366 + 32 350 141744 81 143 122 5 0 1 109 chain 29672 chr7 159138663 + 117196562 117196872 AluYa5 310 - 0 310 85935 310 chain 18598 chr7 159138663 + 117198389 117198607 AluY 311 + 63 282 131233 69 0 1 149 chain 106662 chr7 159138663 + 117223603 117225068 L1PB2 3958 - 120 1536 35076 62 2 1 22 2 0 72 1 0 64 1 0 77 1 0 89 18 12 10 0 5 17 0 1 32 7 0 11 1 0 55 2 0 383 1 0 45 0 1 162 0 2 234 38 3 56 chain 99524 chr7 159138663 + 117236020 117237441 LTR12C 1709 + 0 1709 36899 192 3 4 18 3 5 119 0 6 4 0 37 79 17 9 27 1 2 63 8 1 10 0 7 67 0 119 68 1 0 238 0 47 93 40 13 72 9 20 119 0 101 81 15 14 74 chain 5713 chr7 159138663 + 117237461 117237536 MER30B 195 - 6 76 187993 42 5 0 28 chain 37723 chr7 159138663 + 117250044 117250453 L1PA2 6032 + 5623 6032 72522 409 chain 42532 chr7 159138663 + 117348088 117348606 L1PA7 6471 - 3 529 65975 7 4 0 224 0 4 18 0 7 117 0 1 148 chain 22749 chr7 159138663 + 117392997 117393297 L1PA11 4918 + 4203 4502 116832 126 2 0 52 0 2 10 2 1 7 0 2 72 2 0 27 chain 28837 chr7 159138663 + 117434931 117435248 AluYb8 318 - 2 318 89736 190 2 0 110 0 1 15 chain 27255 chr7 159138663 + 117441960 117442254 L1PA2 6032 - 0 294 95418 294 chain 22409 chr7 159138663 + 117526450 117526921 L1PB1 5432 + 4989 5426 118443 109 18 16 24 1 0 6 1 0 14 27 21 41 2 1 15 1 0 43 2 1 16 24 12 18 14 11 9 2 0 27 1 0 19 1 0 12 1 0 11 2 1 10 chain 390281 chr7 159138663 + 117559532 117566471 L1PB1 5432 + 19 5419 10446 189 0 10 184 1 0 9 0 1 131 0 1 8 0 1 24 0 1 72 1 0 144 8 0 229 2 11 370 137 16 289 0 1 14 0 1 13 0 28 12 17 0 79 9 0 300 34 31 28 0 8 58 0 1 93 0 4 99 0 1 14 1 0 88 0 3 107 5 6 80 5 6 55 5 4 441 1445 0 52 0 79 317 23 0 472 0 2 17 0 1 403 6 8 279 3 7 112 0 1 69 56 14 21 1 0 9 1 0 10 19 13 50 2 1 15 1 0 41 11 10 9 5 1 11 9 0 19 8 5 14 2 0 24 1 0 13 0 4 4 1 0 13 2 1 14 chain 121782 chr7 159138663 + 117562891 117564304 L1PA4 6152 + 2890 6151 30452 281 1 0 120 0 1 36 0 1 32 6 1854 175 1 0 761 chain 59475 chr7 159138663 + 117606197 117606867 L1PA4 6152 - 2883 3552 53127 114 1 0 555 chain 258328 chr7 159138663 + 117606871 117609766 L1PA4 6152 + 3254 6151 15791 1097 0 4 1791 2 0 5 chain 34113 chr7 159138663 + 117624356 117624730 L1PA3long 6157 - 883 1257 77465 374 chain 79738 chr7 159138663 + 117624730 117625612 L1PA3long 6157 + 5276 6157 43716 728 1 0 153 chain 129861 chr7 159138663 + 117634333 117635913 THE1A-int 1579 + 0 1579 28120 430 1 0 5 4 7 134 1 0 7 0 1 676 3 0 319 chain 27680 chr7 159138663 + 117635913 117636266 THE1A 353 + 0 353 94116 110 1 0 181 0 1 61 chain 399593 chr7 159138663 + 117656949 117662298 L1PB1 5432 + 19 5422 10110 174 0 25 187 2 3 19 9 10 168 0 3 82 3 4 33 0 1 89 0 1 205 2 11 106 0 1 86 0 4 165 0 4 108 4 12 413 2 3 322 30 24 48 1 2 159 1 2 337 6 0 9 6 7 519 0 1 29 0 7 123 2 3 297 0 1 11 9 27 98 0 1 23 1 0 219 5 6 371 0 1 122 0 2 38 1 0 59 1 0 51 0 3 53 0 3 189 1 2 10 5 2 21 1 0 9 1 0 11 5 1 8 2 0 53 2 1 60 1 0 15 3 0 6 16 6 19 31 26 17 1 0 16 6 5 13 1 0 18 chain 27436 chr7 159138663 + 117696099 117696405 AluYf5 307 + 0 304 94860 266 2 0 38 chain 61182 chr7 159138663 + 117709918 117710650 L1PA7 6471 + 5732 6466 52258 399 0 1 254 0 1 79 chain 25658 chr7 159138663 + 117736052 117736356 AluSg7 307 - 4 307 101459 177 1 0 126 chain 140024 chr7 159138663 + 117742912 117744454 L1PA3long 6157 + 4614 6157 26143 917 0 1 625 chain 24834 chr7 159138663 + 117748787 117749080 L1PA6 6164 + 5867 6160 105702 293 chain 275948 chr7 159138663 + 117756933 117761418 HERVK22-int 3844 + 13 3844 14877 30 3 0 1030 1 0 273 0 1 157 11 12 236 3 27 1268 1 0 71 1 0 6 1 0 20 1 0 36 1 0 18 2 0 33 11 9 7 1 0 39 6 4 16 26 15 10 2 0 7 14 8 10 1 0 5 69 51 19 10 6 12 0 2 12 826 203 77 24 23 78 chain 516853 chr7 159138663 + 117762282 117768419 L1PA6 6164 + 0 6160 5503 252 0 2 259 15 0 7 0 15 694 0 4 1040 0 1 51 16 0 64 5 0 7 0 31 754 3 4 4 0 1 459 0 1 46 1 0 95 0 1 69 0 1 265 0 3 282 0 1 78 1 6 184 0 1 682 0 3 166 1 2 489 1 0 125 11 0 11 chain 7730 chr7 159138663 + 117772541 117772637 MLT1B 390 - 0 97 172710 67 0 1 29 chain 126540 chr7 159138663 + 117774647 117776224 THE1B-int 1605 + 0 1605 28932 15 0 2 415 5 30 1102 0 1 40 chain 19949 chr7 159138663 + 117836811 117837060 AluSc 308 - 38 288 127306 144 3 4 102 chain 4404 chr7 159138663 + 117842922 117842976 MER5A1 166 + 111 165 201889 54 chain 17168 chr7 159138663 + 117870019 117870268 L1P4 1494 + 80 326 135113 8 2 0 4 3 0 32 2 1 20 1 0 154 0 4 23 chain 32932 chr7 159138663 + 117880225 117880589 L1PA2 6032 - 10 374 79318 364 chain 30092 chr7 159138663 + 117880926 117881243 AluYb8 318 + 0 317 84508 317 chain 27628 chr7 159138663 + 117893963 117894255 AluYa5 310 - 0 292 94271 292 chain 31389 chr7 159138663 + 117910361 117910818 L1PA10 4194 - 44 496 81840 33 3 0 41 9 10 129 20 16 40 2 3 180 chain 46943 chr7 159138663 + 117924797 117925333 L1PA4 6152 + 5604 6141 61266 434 0 1 102 chain 114231 chr7 159138663 + 117942676 117943983 L1PA5 6144 - 0 1303 33018 154 1 0 696 1 0 329 1 0 73 1 0 51 chain 360111 chr7 159138663 + 117953355 117958084 L1PA7 6471 - 2 5720 11360 86 7 9 384 0 9 357 0 3 352 0 2 60 1 2 598 0 1 40 325 0 66 2 1 91 0 1 145 7 5 306 0 656 52 4 0 6 0 4 208 5 8 171 2 0 208 4 5 137 0 635 101 6 7 307 0 4 691 chain 38311 chr7 159138663 + 117959959 117960475 MER41A 554 - 7 544 71696 143 3 15 261 2 12 52 4 3 51 chain 15434 chr7 159138663 + 117977591 117978031 L1MA2 4263 - 43 353 140093 14 4 2 16 162 48 15 3 1 9 4 2 9 1 0 46 7 0 93 9 7 48 chain 127688 chr7 159138663 + 117978374 117979943 THE1A-int 1579 + 0 1579 28649 117 1 2 158 0 1 130 0 1 298 0 7 865 chain 27404 chr7 159138663 + 117979943 117980297 THE1A 353 + 0 353 94953 110 1 0 92 2 1 9 2 3 138 chain 28534 chr7 159138663 + 117981011 117981366 THE1C 375 + 0 355 91030 103 0 1 246 1 0 5 chain 199020 chr7 159138663 + 117981941 117984127 L1PA3long 6157 - 15 2200 19277 244 1 0 1941 chain 44241 chr7 159138663 + 117993595 117994172 MER4A 717 - 0 561 63894 227 16 0 334 chain 74860 chr7 159138663 + 117996609 117997465 L1PA4 6152 + 5281 6152 46084 247 0 2 121 1 7 346 1 2 32 0 1 102 0 5 6 chain 29470 chr7 159138663 + 118002137 118002582 MLT2A2 560 + 0 560 86756 183 43 49 62 6 0 4 0 115 147 chain 25295 chr7 159138663 + 118011063 118011421 THE1B 368 - 12 368 103248 55 6 7 68 15 10 43 2 1 130 0 5 24 2 0 13 chain 18821 chr7 159138663 + 118017337 118017593 L1PA7 6471 - 6 275 130605 98 3 17 22 1 0 4 0 1 106 1 0 21 chain 23964 chr7 159138663 + 118023345 118023712 THE1D 372 + 0 372 110547 97 7 8 56 27 33 117 9 8 21 1 0 32 chain 19897 chr7 159138663 + 118032481 118032698 L1PA4 6152 - 1484 1701 127492 217 chain 132511 chr7 159138663 + 118032698 118034178 L1PA4 6152 + 4659 6141 27521 212 0 1 667 0 1 601 chain 21258 chr7 159138663 + 118044660 118044980 THE1D 372 + 0 332 122998 58 3 18 7 4 0 18 1 0 64 23 22 9 0 3 133 chain 93266 chr7 159138663 + 118052582 118053635 L1PA4 6152 - 0 1046 38578 141 7 0 905 chain 33391 chr7 159138663 + 118076777 118077233 LTR9 672 - 173 672 78586 99 3 45 19 0 1 244 5 4 22 10 11 54 chain 4404 chr7 159138663 + 118083933 118083993 MADE1 96 - 0 96 201888 22 0 36 38 chain 4607 chr7 159138663 + 118085048 118085107 L1MCb 1641 - 779 838 199536 59 chain 11798 chr7 159138663 + 118089265 118089390 L1PA6 6164 - 314 439 153053 125 chain 25989 chr7 159138663 + 118096614 118096975 THE1B 368 + 0 368 100055 55 0 9 108 2 1 47 1 0 16 0 5 6 11 6 115 chain 42363 chr7 159138663 + 118114323 118114872 MLT2A2 560 - 0 560 66199 92 0 1 54 3 14 184 5 0 6 0 5 185 1 0 19 chain 33425 chr7 159138663 + 118124358 118124725 L1PA2 6032 - 0 368 78523 341 0 1 26 chain 15053 chr7 159138663 + 118127638 118127970 L1PB1 5432 + 5114 5420 141163 32 1 0 10 17 11 53 3 2 9 2 5 18 0 1 20 7 6 15 14 1 30 3 1 4 1 0 14 2 0 24 1 0 21 6 5 8 1 0 16 chain 11869 chr7 159138663 + 118147455 118147610 L1PA8 5853 + 5702 5850 152744 41 1 0 17 1 0 64 4 0 15 1 0 11 chain 5365 chr7 159138663 + 118168354 118168418 L1PA8A 6298 + 6212 6276 191370 64 chain 137816 chr7 159138663 + 118191934 118193440 L1PA3long 6157 - 410 1916 26514 1506 chain 10468 chr7 159138663 + 118193440 118193552 L1PA3long 6157 + 4129 4241 157210 112 chain 21763 chr7 159138663 + 118203345 118203686 THE1B 368 + 0 342 121163 15 2 0 25 0 5 18 26 22 85 1 0 22 6 0 47 1 10 93 chain 22296 chr7 159138663 + 118210850 118211548 MSTA 426 - 0 426 118926 186 329 47 5 1 0 4 1 0 24 0 6 18 35 40 23 8 9 64 chain 5173 chr7 159138663 + 118211268 118211365 L1PB1 5432 + 5114 5203 193316 20 1 0 12 1 0 10 9 5 6 2 0 36 chain 33773 chr7 159138663 + 118220780 118221247 LTR7C 471 - 0 471 77980 16 0 1 8 2 0 5 0 2 32 1 0 213 1 6 6 5 0 13 0 3 67 8 9 90 chain 28580 chr7 159138663 + 118260811 118261136 L1PA7 6471 - 4 331 90820 143 0 1 71 0 1 111 chain 31799 chr7 159138663 + 118286077 118286498 MER57A1 433 - 10 433 81170 43 23 21 31 0 2 42 0 2 282 chain 24047 chr7 159138663 + 118323192 118323563 THE1C 375 - 0 371 110061 24 2 1 22 4 5 132 1 0 9 0 1 27 0 20 9 23 0 90 1 4 27 chain 28965 chr7 159138663 + 118343845 118344155 AluYa5 310 - 0 310 89155 310 chain 27546 chr7 159138663 + 118350564 118350873 L1PA4 6152 + 5841 6151 94516 155 0 1 154 chain 28642 chr7 159138663 + 118365299 118365623 L1PA3long 6157 + 5828 6152 90555 324 chain 41058 chr7 159138663 + 118369906 118370355 L1PA2 6032 + 5580 6029 67823 449 chain 12630 chr7 159138663 + 118380137 118380312 THE1D-int 1627 - 1450 1607 149730 38 1 0 102 1 0 10 16 0 7 chain 12750 chr7 159138663 + 118427756 118427906 L1PA5 6144 + 5994 6143 149254 137 3 2 10 chain 4508 chr7 159138663 + 118455582 118455662 MER20 218 + 0 77 200694 17 16 13 47 chain 54411 chr7 159138663 + 118467316 118467987 L1PA7 6471 + 5794 6466 56088 369 0 1 126 2 0 5 5 7 164 chain 29292 chr7 159138663 + 118471133 118471484 L1PA7 6471 - 184 536 87612 123 0 1 228 chain 36179 chr7 159138663 + 118491037 118491473 L1PA7 6471 + 6012 6450 74663 397 0 2 39 chain 2889 chr7 159138663 + 118491520 118491577 L1MA10 1535 + 1382 1441 227217 8 4 0 11 5 11 29 chain 5760 chr7 159138663 + 118498424 118498550 LTR12C 1709 - 506 591 187553 24 50 9 52 chain 5646 chr7 159138663 + 118500654 118500825 MLT1A0 366 - 17 194 188607 62 86 92 23 chain 46229 chr7 159138663 + 118509267 118510187 LTR71B 605 + 0 605 61826 134 22 17 281 1 2 99 311 0 72 chain 11584 chr7 159138663 + 118512048 118512202 LTR71B 605 - 0 162 153954 42 3 11 109 chain 18378 chr7 159138663 + 118519224 118519553 THE1B 368 - 57 368 131854 68 77 45 29 1 0 110 0 15 44 chain 17387 chr7 159138663 + 118556416 118556612 L1PA3long 6157 - 0 199 134549 187 0 3 9 chain 29925 chr7 159138663 + 118563306 118563785 MER75 514 + 45 514 85028 60 37 38 214 16 4 112 18 19 22 chain 6123 chr7 159138663 + 118596364 118596444 L1PBa 3878 - 2271 2351 184242 80 chain 69923 chr7 159138663 + 118603520 118604286 L1PA2 6032 - 0 760 48388 606 6 0 154 chain 128034 chr7 159138663 + 118604286 118605670 L1PA2 6032 + 3882 5266 28559 1384 chain 3586 chr7 159138663 + 118608290 118608334 MER5A1 166 - 86 130 213890 44 chain 13259 chr7 159138663 + 118665393 118665612 L1PA8 5853 - 0 214 147248 93 1 0 16 1 0 42 26 23 40 chain 80296 chr7 159138663 + 118672055 118673042 L1PA7 6471 - 1 986 43476 848 2 1 131 1 0 5 chain 22657 chr7 159138663 + 118674552 118674805 L1PA4 6152 + 5898 6151 117293 253 chain 6241 chr7 159138663 + 118682513 118682591 L1PA8 5853 + 5775 5853 183240 78 chain 121891 chr7 159138663 + 118722772 118724139 L1PA4 6152 - 1 1368 30418 548 1 0 257 0 1 561 chain 79781 chr7 159138663 + 118740300 118741264 LTR5_Hs 974 - 0 974 43692 63 1 0 41 0 1 217 0 6 182 1 5 459 chain 20710 chr7 159138663 + 118759981 118760343 L1PB 1623 + 1190 1529 124928 106 1 0 13 3 1 126 0 1 9 1 0 7 2 1 26 12 8 13 5 1 13 1 0 7 10 0 7 chain 7621 chr7 159138663 + 118762969 118763169 MLT1B 390 + 139 342 173401 32 57 59 32 28 29 51 chain 37108 chr7 159138663 + 118781542 118781946 L1PA2 6032 - 0 404 73370 404 chain 6247 chr7 159138663 + 118783854 118783924 L1PA5 6144 - 14 84 183187 70 chain 147545 chr7 159138663 + 118799245 118801459 L1PB1 5432 - 8 2178 24954 4 1 0 16 1 0 8 0 11 15 1 0 8 78 62 4 1 0 16 1 0 43 1 0 16 8 7 47 2 0 5 105 59 394 1 4 83 8 9 91 0 5 561 1 0 135 4 0 24 1 4 71 0 3 31 4 9 253 18 19 153 chain 21945 chr7 159138663 + 118814723 118815066 L1PA8 5853 - 0 337 120442 73 12 13 7 1 0 16 9 8 46 17 15 67 2 0 44 1 0 48 chain 10574 chr7 159138663 + 118835789 118836184 L1PB4 2604 - 153 549 157936 56 11 9 24 140 153 74 51 0 6 12 53 21 chain 103472 chr7 159138663 + 118854152 118855302 L1PA3long 6157 - 0 1150 35692 1150 chain 133366 chr7 159138663 + 118855302 118856785 L1PA3long 6157 + 3495 4984 27352 25 5 10 1323 0 1 130 chain 3794 chr7 159138663 + 118856883 118856934 L1M3e 1964 - 203 253 210468 46 1 0 4 chain 3357 chr7 159138663 + 118857607 118857646 MLT2A1 477 + 438 477 217937 39 chain 5027 chr7 159138663 + 118870022 118870084 MER41B 635 - 87 153 194860 45 0 4 17 chain 125129 chr7 159138663 + 118870170 118871568 L1PA4 6152 - 9 1407 29350 1398 chain 6731 chr7 159138663 + 118922077 118922163 L1PA8 5853 + 5766 5853 179463 9 0 1 77 chain 93537 chr7 159138663 + 118940142 118941360 L1PA8A 6298 - 7 1229 38500 430 0 5 14 1 0 4 0 7 165 8 14 69 28 16 288 1 0 210 chain 72170 chr7 159138663 + 118956154 118956986 L1PA5 6144 - 0 833 47395 154 7 8 671 chain 128485 chr7 159138663 + 118956991 118958440 L1PA5 6144 + 3788 5236 28459 514 1 0 934 chain 92060 chr7 159138663 + 118962724 118963743 L1PA3long 6157 - 21 1041 38951 126 0 1 893 chain 14314 chr7 159138663 + 118975642 118975829 Tigger3a 397 - 55 246 143515 160 1 5 26 chain 176310 chr7 159138663 + 118979611 118981759 L1PA6 6164 + 4071 6161 21328 578 1 0 192 5 6 127 41 0 8 23 0 12 0 7 397 1 0 606 6 7 6 1 0 144 chain 17085 chr7 159138663 + 118987933 118988236 L1PREC2 3366 + 1685 1960 135363 141 8 5 42 19 15 26 6 5 16 20 1 4 1 0 20 chain 41278 chr7 159138663 + 119003021 119003485 L1PA3long 6157 + 5690 6157 67564 323 0 3 141 chain 21721 chr7 159138663 + 119004336 119004748 L1PA11 4918 - 338 733 121312 13 2 0 13 1 0 15 8 4 13 31 22 11 1 0 14 2 0 68 2 0 13 10 9 45 6 9 21 0 2 123 chain 13083 chr7 159138663 + 119013484 119013654 L1PA14 3548 + 1786 1961 147912 25 0 5 145 chain 55345 chr7 159138663 + 119018670 119019408 LTR17 781 - 24 781 55493 38 13 36 220 1 0 136 1 0 148 1 0 118 1 0 61 chain 23349 chr7 159138663 + 119052887 119053299 LTR12C 1709 - 672 1042 113927 21 6 47 66 41 0 65 1 0 159 41 0 12 chain 1362 chr7 159138663 + 119052980 119053009 LTR12C 1709 - 521 550 137360 29 chain 1925 chr7 159138663 + 119053246 119053287 LTR12C 1709 - 711 752 137360 41 chain 6330 chr7 159138663 + 119072830 119072904 L1PA11 4918 + 3350 3424 182542 74 chain 123395 chr7 159138663 + 119103465 119104892 L1P2 5180 + 1851 3262 29916 466 14 1 5 1 0 854 1 0 12 1 0 73 chain 7081 chr7 159138663 + 119124188 119124315 MLT1C 463 + 58 178 176879 47 1 2 14 10 4 11 1 0 32 1 0 10 chain 56282 chr7 159138663 + 119132051 119132691 L1PA3long 6157 + 5417 6156 54971 374 0 99 266 chain 32994 chr7 159138663 + 119132730 119133101 L1PA4 6152 + 5768 6139 79225 371 chain 10118 chr7 159138663 + 119139858 119139975 L1PA4 6152 + 6026 6143 160001 117 chain 187161 chr7 159138663 + 119142220 119144373 L1PA5 6144 - 2 2184 20322 58 0 19 766 1 5 754 0 1 78 5 10 491 chain 9683 chr7 159138663 + 119144373 119144489 L1PA5 6144 + 3801 3918 161762 94 0 1 22 chain 28627 chr7 159138663 + 119157091 119157455 L1PA6 6164 - 3 367 90622 146 7 0 6 0 7 205 chain 24337 chr7 159138663 + 119197045 119197305 AluYg6 310 - 11 271 108438 260 chain 265314 chr7 159138663 + 119207209 119210254 HERV17-int 4347 + 1300 4347 15425 920 1 0 385 0 1 165 0 1 122 1 0 6 0 1 239 0 1 351 1 0 6 0 1 848 chain 26972 chr7 159138663 + 119210566 119210883 LTR17 781 + 0 326 96367 119 0 9 198 chain 551761 chr7 159138663 + 119226763 119232790 L1PA2 6032 + 0 6032 1216 228 0 4 25 1 0 1417 0 1 1766 0 1 2129 1 0 204 0 1 256 chain 248804 chr7 159138663 + 119238239 119242718 L1PA8 5853 - 0 3276 16322 93 1 0 19 6 5 47 9 7 70 3 1 47 1 0 43 0 1 339 4 1 168 4 2 138 9 14 375 1 0 149 1 0 27 8 19 35 6 7 149 7 1 157 11 12 56 0 1 206 1203 0 534 3 4 211 1 0 338 chain 37820 chr7 159138663 + 119240480 119240944 L1PA7 6471 - 11 492 72385 284 3 20 177 chain 11197 chr7 159138663 + 119249461 119249612 L1PA8 5853 + 5704 5853 155431 36 2 1 19 1 0 93 chain 34364 chr7 159138663 + 119252170 119252561 L1PA7 6471 + 6073 6465 77113 240 0 1 151 chain 175257 chr7 159138663 + 119274094 119276026 L1PA3long 6157 - 0 1937 21426 1553 0 1 249 0 1 4 0 3 126 chain 275601 chr7 159138663 + 119284153 119287285 L1PA4 6152 - 1 3150 14893 843 0 4 150 0 5 59 0 3 206 5 6 107 0 1 1212 0 1 44 0 1 326 0 1 180 chain 219737 chr7 159138663 + 119288835 119291291 L1PA3long 6157 + 3698 6157 17898 39 0 1 208 0 1 1036 0 1 1173 chain 97910 chr7 159138663 + 119296766 119297823 L1HS 6032 - 0 1057 37302 1057 chain 41586 chr7 159138663 + 119297823 119298269 L1HS 6032 + 4526 4972 66936 446 chain 4997 chr7 159138663 + 119351953 119352011 THE1B 368 - 246 304 195172 58 chain 47973 chr7 159138663 + 119367561 119368186 PRIMA4_LTR 623 + 2 623 60505 23 1 0 234 3 4 47 6 5 77 3 0 231 chain 36555 chr7 159138663 + 119376210 119376650 L1PA7 6471 + 6024 6465 74164 112 0 1 328 chain 7095 chr7 159138663 + 119417469 119417549 L1PA3long 6157 + 6072 6152 176801 80 chain 108170 chr7 159138663 + 119435742 119436977 L1PA4 6152 - 1 1245 34660 147 0 1 5 3 4 209 10 12 252 0 1 212 0 4 397 chain 27579 chr7 159138663 + 119459863 119460166 AluYb8 318 - 0 298 94408 192 2 0 3 3 0 103 chain 5803 chr7 159138663 + 119468556 119468628 MLT1B 390 + 276 348 187117 72 chain 38588 chr7 159138663 + 119478732 119479214 LTR7B 505 - 0 505 71306 56 0 1 131 0 1 59 2 25 19 7 5 208 chain 4769 chr7 159138663 + 119484416 119484475 MSTB-int 1649 - 1502 1561 197711 59 chain 376225 chr7 159138663 + 119494874 119499206 L1P1 4361 + 6 4341 10875 145 15 16 355 4 0 85 0 1 629 0 1 1017 2 1 49 1 6 67 0 4 795 1 0 974 1 0 154 1 0 23 2 1 12 chain 88311 chr7 159138663 + 119500000 119500997 L1PA4 6152 + 5145 6143 40257 244 0 1 753 chain 136388 chr7 159138663 + 119506315 119507836 L1PA3long 6157 + 4629 6157 26767 1378 1 8 142 chain 62279 chr7 159138663 + 119516264 119517012 L1PA6 6164 - 2 746 51764 6 4 0 738 chain 92775 chr7 159138663 + 119521814 119522874 L1PA5 6144 + 5079 6140 38723 104 1 0 620 0 1 279 0 1 56 chain 25840 chr7 159138663 + 119546851 119547150 AluYk4 311 - 1 310 100705 123 0 10 176 chain 110663 chr7 159138663 + 119547549 119549067 THE1A-int 1579 - 52 1579 34042 13 9 8 51 0 3 72 0 25 221 3 4 158 8 9 170 2 1 20 0 2 205 9 5 85 0 4 90 35 14 189 0 1 7 2 1 169 chain 18705 chr7 159138663 + 119554095 119554314 L1P3 4156 + 2669 2888 130929 219 chain 32051 chr7 159138663 + 119554326 119554705 L1PA7 6471 + 6088 6467 80777 379 chain 108717 chr7 159138663 + 119554821 119556510 L1PB1 5432 - 12 1688 34503 16 1 0 9 0 3 20 1 0 26 2 0 14 1 0 5 2 0 28 36 22 41 6 5 10 1 2 52 2 0 8 6 2 10 1 0 7 3 2 24 13 11 179 0 1 115 13 13 67 0 10 11 0 2 14 10 14 49 7 0 130 13 18 25 4 3 119 4 5 147 1 0 205 2 1 5 0 1 147 8 10 63 1 0 5 chain 23185 chr7 159138663 + 119567323 119567660 THE1B 368 + 8 368 114751 36 0 15 113 1 0 25 37 46 125 chain 9835 chr7 159138663 + 119569310 119569442 THE1B 368 + 2 151 161424 17 0 2 18 5 20 92 chain 9825 chr7 159138663 + 119569460 119569625 THE1B 368 + 168 342 161476 28 0 1 4 34 42 99 chain 141907 chr7 159138663 + 119590361 119592127 LTR12C 1709 - 0 1709 25838 216 102 0 265 0 4 90 0 1 15 3 1 5 1 0 198 5 7 30 0 40 697 0 1 139 chain 2852 chr7 159138663 + 119590577 119590627 LTR12C 1709 - 85 165 199400 17 0 1 4 9 38 20 chain 19618 chr7 159138663 + 119603337 119603552 L1PA5 6144 + 5923 6138 128338 215 chain 30376 chr7 159138663 + 119621415 119621731 AluYb8 318 + 0 316 83715 316 chain 45916 chr7 159138663 + 119631460 119632071 MER11C 1089 - 33 1089 62117 137 1 0 53 0 1 20 17 8 99 0 1 42 2 6 49 2 451 189 chain 9611 chr7 159138663 + 119646039 119646150 U1 164 - 48 159 162531 111 chain 32825 chr7 159138663 + 119649232 119649671 LTR7 482 + 0 470 79497 48 1 0 53 15 14 110 5 36 46 0 2 161 chain 271464 chr7 159138663 + 119649685 119653179 HERVH-int 3825 + 0 3825 15115 333 2 1 33 83 401 13 2 0 6 3 8 338 15 21 83 13 7 187 9 0 27 0 2 10 1 0 183 0 4 165 9 7 87 5 6 64 0 1 13 0 4 85 0 5 272 0 1 396 0 1 309 13 16 45 5 1 273 36 37 103 0 2 38 0 2 235 chain 30243 chr7 159138663 + 119654445 119654889 LTR7 482 + 0 482 84079 100 7 64 16 51 0 50 0 31 44 0 1 176 chain 128916 chr7 159138663 + 119667130 119668906 L1PA11 4918 - 340 2095 28331 11 2 0 13 2 1 14 45 30 6 0 1 11 4 3 14 2 0 48 0 3 16 14 12 58 1 6 348 4 0 66 1 0 141 0 3 33 0 3 22 0 4 88 26 11 396 0 3 390 chain 4996 chr7 159138663 + 119680506 119680565 THE1B 368 - 309 368 195183 59 chain 23633 chr7 159138663 + 119681572 119681884 THE1A 353 + 42 353 112403 42 0 1 4 1 0 13 9 8 243 chain 123360 chr7 159138663 + 119681884 119683454 THE1A-int 1579 + 0 1579 29927 163 19 9 656 0 1 298 0 18 434 chain 57620 chr7 159138663 + 119687141 119687915 LTR17 781 + 0 771 54176 244 14 15 24 4 0 43 5 4 38 7 8 319 1 23 20 22 0 33 chain 40249 chr7 159138663 + 119721744 119722233 L1PA5 6144 + 5649 6138 68945 332 17 17 140 chain 15199 chr7 159138663 + 119725148 119725333 L1PA7 6471 + 6284 6470 140778 172 1 2 12 chain 74767 chr7 159138663 + 119749750 119750817 MER11A 1151 + 1 1150 46128 78 0 8 135 7 6 59 7 18 119 5 6 118 2 1 5 0 1 127 6 9 11 3 4 22 6 4 11 0 4 69 4 31 16 0 32 99 5 4 87 1 0 65 chain 102281 chr7 159138663 + 119756204 119757418 L1PA6 6164 + 4951 6162 36200 285 0 1 594 0 1 324 5 0 6 chain 29191 chr7 159138663 + 119764560 119764994 MER4A1 472 + 0 458 88098 133 1 0 51 0 4 16 50 71 183 chain 27952 chr7 159138663 + 119794510 119794862 L1PA8A 6298 - 709 1073 92045 63 0 5 28 1 4 60 0 4 200 chain 57090 chr7 159138663 + 119794862 119795573 L1PA8A 6298 + 5580 6291 54481 153 0 1 298 1 0 122 0 1 26 8 7 103 chain 22621 chr7 159138663 + 119799362 119799643 AluSc8 310 + 4 288 117484 124 11 14 146 chain 41996 chr7 159138663 + 119807626 119808130 MER9a1 513 + 0 504 66631 233 3 0 7 1 4 260 chain 24413 chr7 159138663 + 119835501 119835882 MSTA 426 + 0 424 108011 112 0 25 67 50 48 44 1 21 107 chain 364090 chr7 159138663 + 119847409 119852268 L1PA8A 6298 + 1712 6289 11256 68 0 27 637 0 2 50 0 19 25 0 1 905 0 2 5 2 0 85 12 8 52 15 20 23 0 1 200 0 1 228 0 1 37 12 13 410 4 7 285 0 1 64 27 1 599 2 1 110 0 4 68 314 0 40 2 3 4 1 0 499 4 1 70 chain 3562 chr7 159138663 + 119854861 119855008 L1MA8 2339 - 82 220 214279 25 90 81 32 chain 548438 chr7 159138663 + 119874886 119881028 L1PA4 6152 - 1 6146 1649 104 0 3 40 0 1 420 0 1 220 0 1 702 1 0 978 1 0 1203 0 1 1233 1 0 668 2 1 569 chain 20509 chr7 159138663 + 119894312 119894637 THE1D 372 + 0 336 125603 56 16 7 36 5 6 5 1 0 18 0 4 36 15 25 45 0 6 92 chain 4475 chr7 159138663 + 119908672 119908735 Tigger3d 321 + 14 78 201072 35 1 2 27 chain 21691 chr7 159138663 + 119963053 119963327 L1PA8 5853 - 6 276 121426 87 1 0 18 1 0 63 1 0 28 0 1 42 2 0 31 chain 217688 chr7 159138663 + 119963354 119965737 L1PA3long 6157 - 0 2383 18022 2383 chain 5042 chr7 159138663 + 119995615 119995675 MER47B 469 + 247 307 194717 60 chain 3437 chr7 159138663 + 119995675 119995737 MER47B 469 - 314 376 211734 17 7 0 6 1 8 31 chain 3600 chr7 159138663 + 120000000 120000066 THE1D 372 + 257 325 213644 12 15 17 39 chain 114876 chr7 159138663 + 120030967 120032492 L1PA8 5853 - 0 1521 32827 29 8 7 52 6 5 19 2 1 4 0 1 34 15 14 8 1 0 71 2 0 43 2 1 61 0 1 415 2 3 74 2 0 228 7 9 403 0 1 37 chain 34884 chr7 159138663 + 120050602 120051027 L1PA5 6144 - 0 425 76362 425 chain 12064 chr7 159138663 + 120051027 120051169 L1P1 4361 + 4169 4310 151923 136 1 0 5 chain 42803 chr7 159138663 + 120088103 120088603 L1PA5 6144 - 18 518 65652 132 0 5 7 6 1 355 chain 21532 chr7 159138663 + 120088613 120088878 L1P1 4361 + 3620 3882 122036 55 4 1 206 chain 22206 chr7 159138663 + 120219378 120219653 AluSc5 308 + 2 278 119323 106 2 3 167 chain 3216 chr7 159138663 + 120254861 120254898 Charlie16a 284 + 145 182 220647 37 chain 29287 chr7 159138663 + 120257385 120257939 L1PA15 4387 + 3857 4366 87633 33 4 2 15 1 0 26 1 0 66 0 2 98 5 0 5 1 0 26 1 0 52 16 15 8 4 0 12 17 16 21 19 16 44 10 6 8 22 0 28 1 0 10 chain 172679 chr7 159138663 + 120289765 120291806 L1P1 4361 - 2314 4355 21744 709 0 1 302 0 1 4 1 0 300 1 0 724 chain 21139 chr7 159138663 + 120395105 120395412 Tigger3a 397 + 0 366 123416 75 15 64 20 1 11 196 chain 28734 chr7 159138663 + 120416684 120417078 LTR7 482 - 8 482 90189 150 0 10 18 0 31 31 9 10 109 8 46 69 chain 286179 chr7 159138663 + 120418887 120422537 HERVH-int 3825 - 0 3825 14274 488 7 217 1403 4 32 175 0 2 38 1 0 39 9 0 652 1 0 30 4 0 52 1 0 38 5 42 13 87 0 24 4 3 7 1 0 40 1 0 44 24 0 9 1 27 81 4 5 30 2 1 50 0 2 281 chain 4523 chr7 159138663 + 120421877 120421934 HERVH-int 3825 - 3280 3337 168347 57 chain 29749 chr7 159138663 + 120422539 120422939 LTR7 482 - 0 481 85658 158 0 10 9 0 1 39 9 41 109 8 46 68 chain 32849 chr7 159138663 + 120451180 120452094 L1PB1 5432 + 4847 5422 79460 220 0 2 29 318 9 7 3 0 24 1 0 20 5 1 9 14 12 33 13 12 12 1 0 16 6 7 20 1 0 21 19 7 18 3 1 5 1 0 14 2 0 24 1 0 22 14 12 18 chain 15825 chr7 159138663 + 120455355 120455678 THE1C 375 + 0 335 138874 14 2 0 27 43 45 21 13 14 65 9 10 32 13 9 67 0 14 17 chain 23651 chr7 159138663 + 120525753 120526122 LTR7 482 - 0 482 112300 49 12 14 123 6 7 25 10 82 67 8 46 69 chain 273599 chr7 159138663 + 120527381 120531035 HERVH-int 3825 - 0 3825 14993 135 0 4 86 0 2 143 0 1 5 1 4 6 3 0 72 49 259 27 9 11 223 0 8 692 0 4 41 11 16 308 0 1 307 1 0 10 0 2 28 9 0 159 0 3 42 15 0 447 1 0 62 6 26 11 5 25 17 77 7 13 7 6 8 70 0 22 4 61 188 1 0 333 chain 510230 chr7 159138663 + 120540805 120546910 L1PA6 6164 + 0 6161 6142 145 15 16 34 0 1 79 0 2 190 1 0 201 0 10 4 0 1 224 0 27 382 16 24 407 0 1 50 3 4 165 3 0 245 0 2 120 1 0 171 0 1 462 11 8 201 9 14 109 2 1 967 1 0 101 1 5 98 0 1 83 0 3 142 1 0 476 0 1 181 2 0 27 1 2 438 0 1 48 0 1 177 8 7 94 2 0 7 chain 28435 chr7 159138663 + 120599689 120599988 AluYk12 309 - 0 299 91450 299 chain 14869 chr7 159138663 + 120621220 120621500 L1PB4 2604 - 68 337 141718 45 3 14 65 2 0 20 64 44 81 chain 48287 chr7 159138663 + 120623449 120623976 L1PA3long 6157 - 6 534 60256 428 0 1 99 chain 29751 chr7 159138663 + 120645186 120645529 L1PA7 6471 - 202 547 85645 258 0 2 85 chain 14204 chr7 159138663 + 120645529 120645709 L1PA7 6471 + 6282 6466 143868 41 0 1 41 4 7 94 chain 146578 chr7 159138663 + 120676207 120678345 L1PB1 5432 - 17 2111 25076 10 2 1 13 1 0 21 1 0 24 2 0 14 1 0 7 2 0 10 32 21 13 1 0 33 0 2 9 7 6 10 3 2 13 0 2 33 6 3 9 5 1 14 1 0 10 1 0 19 9 0 12 17 5 36 2 1 84 1 2 47 0 1 5 5 4 48 1 0 4 0 1 22 0 1 31 2 0 5 1 2 182 3 0 28 0 2 573 0 2 18 1 2 252 18 19 257 0 1 147 chain 117522 chr7 159138663 + 120699842 120701243 LTR12C 1709 + 0 1709 31958 300 0 1 100 0 34 173 1 0 42 0 278 140 0 2 42 1 0 4 4 2 95 15 5 6 0 4 397 1 0 53 0 4 27 chain 161404 chr7 159138663 + 120707176 120708977 L1PA4 6152 - 0 1809 23134 6 0 7 279 1 2 1515 chain 6525 chr7 159138663 + 120715768 120716030 Tigger2 2703 - 2444 2703 181057 17 48 50 16 93 91 9 1 0 21 2 0 55 chain 18283 chr7 159138663 + 120727753 120727993 AluSg7 307 - 48 287 132120 103 4 7 7 3 0 18 1 0 104 chain 35430 chr7 159138663 + 120765360 120765843 L1PA8 5853 - 0 476 75640 93 1 0 19 2 1 52 2 1 8 2 1 70 4 2 44 1 0 41 1 0 92 0 1 51 chain 7410 chr7 159138663 + 120815418 120815523 L1PREC2 3366 + 1977 2083 174715 21 1 2 83 chain 18778 chr7 159138663 + 120858686 120858917 L1PA7 6471 + 6236 6465 130741 223 2 0 6 chain 455569 chr7 159138663 + 120861027 120866456 L1PA6 6164 - 2 6164 8556 66 0 2 68 10 2 7 0 11 680 0 8 130 4 5 533 1 2 147 1 0 314 0 1 285 1 0 315 1 0 56 1 0 97 1 2 240 11 8 76 0 4 769 13 0 559 4 0 388 0 1 464 1 0 4 0 1 94 2 737 86 chain 29307 chr7 159138663 + 120881115 120881430 AluYa5 310 + 0 310 87531 126 5 0 184 chain 335734 chr7 159138663 + 120889773 120893526 L1PA4 6152 + 2385 6151 12007 867 0 4 268 0 1 135 2 4 694 0 2 68 0 1 599 6 3 273 0 4 187 0 2 654 chain 22238 chr7 159138663 + 120924043 120924409 THE1C 375 - 0 375 119174 120 1 3 55 12 11 32 20 0 10 23 51 93 chain 111464 chr7 159138663 + 120924409 120925969 THE1C-int 1605 - 0 1578 33819 18 1 0 383 0 3 129 4 5 4 1 0 254 56 50 50 27 28 153 3 4 32 0 1 39 6 14 264 0 2 39 0 8 76 0 1 21 chain 339662 chr7 159138663 + 120929868 120934020 L1PA7 6471 - 7 6471 11907 87 8 0 8 0 8 215 1 0 173 0 1 352 1 4 39 0 1 590 0 1 34 0 2 664 0 2295 221 5 0 1038 41 56 155 0 1 115 2 1 403 chain 8588 chr7 159138663 + 120954795 120955428 L1PA7 6471 + 5111 5758 37115 319 0 15 176 8 7 130 chain 40416 chr7 159138663 + 120955433 120955873 LTR7Y 441 + 0 441 68712 334 0 1 106 chain 292760 chr7 159138663 + 120955873 120959648 HERVH-int 3825 + 0 3825 13837 532 354 0 38 2 1 9 1 0 14 0 150 35 1 0 507 0 1 4 7 6 388 4 31 141 4 0 154 0 10 575 0 14 510 8 218 487 chain 3251 chr7 159138663 + 120956554 120956590 HERVH-int 3825 + 477 513 219997 36 chain 5048 chr7 159138663 + 120956635 120956691 HERVH-int 3825 + 476 532 194655 56 chain 39966 chr7 159138663 + 120960908 120961347 LTR7Y 441 + 0 441 69371 92 0 1 241 0 1 106 chain 9755 chr7 159138663 + 120961347 120962066 L1PA7 6471 + 5758 6465 37115 150 1 0 94 4 0 131 1 0 130 0 1 34 1 0 4 17 14 143 3 0 6 chain 4754 chr7 159138663 + 121022695 121022758 Tigger4a 237 - 139 200 197873 27 2 0 34 chain 20670 chr7 159138663 + 121030349 121030628 LTR8 732 + 11 309 125072 4 0 1 14 4 13 78 1 4 32 0 6 146 chain 25847 chr7 159138663 + 121045266 121045565 AluSc5 308 + 1 300 100666 299 chain 5629 chr7 159138663 + 121048378 121048448 MSTB2 466 + 353 428 188772 14 0 5 56 chain 125257 chr7 159138663 + 121061581 121063186 LTR12C 1709 + 0 1709 29308 183 21 0 116 1 2 163 4 6 249 0 118 274 1 0 6 3 1 74 0 16 16 11 4 330 1 0 67 1 0 84 chain 26261 chr7 159138663 + 121078475 121078793 L1P1 4361 - 3681 4000 98972 102 0 1 216 chain 180262 chr7 159138663 + 121078803 121080852 L1PA5 6144 + 4080 6142 20965 79 1 2 183 0 4 943 0 4 154 0 1 33 0 3 656 chain 11409 chr7 159138663 + 121091397 121091540 Tigger3a 397 + 183 326 154658 143 chain 23293 chr7 159138663 + 121107153 121107441 AluSq2 311 + 19 307 114237 288 chain 4172 chr7 159138663 + 121110541 121110588 MER31B 477 + 421 468 204955 47 chain 72614 chr7 159138663 + 121137321 121138285 MER11A 1151 - 0 1150 47207 60 7 6 87 3 4 101 1 59 19 0 1 67 0 4 52 6 9 136 0 13 228 0 11 66 1 0 29 2 0 44 2 101 53 chain 13857 chr7 159138663 + 121141735 121141976 LTR39 781 + 2 260 145044 13 0 2 5 5 22 130 27 32 45 7 0 9 chain 11070 chr7 159138663 + 121157565 121157702 MSTD 398 - 260 398 155929 26 0 1 111 chain 29313 chr7 159138663 + 121166476 121166851 MLT2A1 477 - 98 477 87502 78 7 6 121 1 5 25 1 2 142 chain 305272 chr7 159138663 + 121205360 121209321 HERVH-int 3825 - 0 3825 13201 225 0 2 582 1 0 43 165 0 136 36 37 23 20 31 1276 1 0 10 0 2 27 9 0 205 15 0 446 1 0 67 9 68 14 4 1 12 1 0 14 7 1 13 2 0 3 2 0 7 1 0 9 2 1 10 0 3 24 6 1 22 1 0 510 chain 24996 chr7 159138663 + 121225429 121225849 LTR9 672 + 15 488 104811 42 20 20 129 6 8 46 1 0 72 33 76 17 9 18 45 chain 75513 chr7 159138663 + 121225862 121226713 L1PA4 6152 - 0 857 45762 6 0 5 566 0 1 279 chain 59027 chr7 159138663 + 121226713 121227380 L1PA4 6152 + 4618 5285 53077 667 chain 26066 chr7 159138663 + 121248258 121248630 THE1D 372 + 5 372 99774 35 12 0 128 18 26 146 1 0 32 chain 85682 chr7 159138663 + 121256581 121257622 MER11C 1089 + 27 1079 41275 223 6 7 165 7 17 128 12 11 14 0 1 486 chain 24022 chr7 159138663 + 121271581 121271857 AluSp 311 - 25 301 110203 276 chain 32951 chr7 159138663 + 121276840 121277219 L1PA5 6144 + 5753 6134 79292 357 0 2 22 chain 56953 chr7 159138663 + 121286948 121287902 L1PA15 4387 - 21 951 54559 10 1 0 27 5 0 12 3 1 46 9 6 47 2 1 9 4 0 22 1 0 16 3 1 6 0 2 30 1 0 5 0 9 7 15 5 172 1 0 41 4 2 25 25 20 15 3 0 11 7 5 100 8 5 28 8 17 57 1 2 7 0 1 160 chain 6225 chr7 159138663 + 121290263 121290356 MLT2A1 477 - 39 167 183369 12 3 41 12 3 0 63 chain 29708 chr7 159138663 + 121307113 121307423 AluYb8 318 - 8 318 85801 310 chain 382367 chr7 159138663 + 121349030 121353658 L1P2 5180 - 538 5178 10683 637 0 2 507 0 4 309 1 0 12 2 1 425 0 1 183 2 1 121 0 3 377 0 1 15 48 39 146 0 5 409 1 0 4 0 1 643 0 15 32 0 1 185 1 0 48 1 0 18 4 0 250 1 0 52 19 18 27 1 0 88 0 1 59 chain 33231 chr7 159138663 + 121387547 121388043 L1PB3 3668 - 167 662 78829 19 20 4 82 6 5 100 1 0 62 7 8 135 0 13 12 1 4 51 chain 33841 chr7 159138663 + 121429780 121430185 L1PA4 6152 - 0 408 77868 13 10 13 79 1 0 8 0 1 294 chain 22153 chr7 159138663 + 121433231 121433512 L1PA8 5853 - 0 276 119580 93 1 0 16 9 8 54 1 0 74 2 0 31 chain 2886 chr7 159138663 + 121433515 121433548 L1PA8 5853 + 5511 5544 227256 33 chain 39775 chr7 159138663 + 121433887 121434389 HERVL-int 5654 + 4554 5654 69659 49 2 573 42 1 0 110 0 2 94 1 0 48 0 23 107 0 4 48 chain 48893 chr7 159138663 + 121448354 121448884 L1PA3long 6157 + 5627 6157 59813 530 chain 18885 chr7 159138663 + 121451007 121451355 THE1B 368 - 0 368 130408 73 16 8 36 50 57 26 1 0 77 14 0 11 0 36 44 chain 28168 chr7 159138663 + 121486269 121486579 AluYg6 310 + 0 310 92407 310 chain 18027 chr7 159138663 + 121536627 121536843 AluY 311 + 82 299 132783 50 0 1 166 chain 3071 chr7 159138663 + 121536853 121536887 L1MB1 2102 + 1965 1999 223539 34 chain 5119 chr7 159138663 + 121589696 121589754 MER4A1 472 - 112 170 193883 58 chain 26215 chr7 159138663 + 121590028 121590387 THE1B 368 - 0 368 99139 75 1 0 94 4 0 17 10 9 114 0 15 44 chain 23937 chr7 159138663 + 121604271 121604636 THE1C 375 - 12 375 110710 146 36 31 5 0 2 87 4 5 87 chain 124306 chr7 159138663 + 121609863 121611250 L1PA5 6144 - 6 1393 29596 1387 chain 21744 chr7 159138663 + 121627437 121627739 L1PA16 3655 - 376 679 121228 75 1 0 9 0 1 90 22 23 105 chain 24545 chr7 159138663 + 121629429 121629717 AluSp 311 - 13 301 107284 288 chain 7890 chr7 159138663 + 121662467 121662564 LTR9B 643 - 84 182 171727 65 0 1 32 chain 20621 chr7 159138663 + 121712734 121712969 L1PA5 6144 - 10 245 125219 235 chain 18882 chr7 159138663 + 121716027 121716257 AluY 311 + 83 302 130418 35 1 0 170 10 0 14 chain 17357 chr7 159138663 + 121732583 121732790 AluSp 311 + 87 294 134636 207 chain 21850 chr7 159138663 + 121746070 121746356 L1PREC2 3366 - 933 1227 120820 85 4 8 177 0 4 20 chain 21232 chr7 159138663 + 121746356 121746777 L1PREC2 3366 + 2619 3000 122393 95 1 0 32 7 6 27 2 1 26 1 0 43 8 4 14 30 22 16 6 1 16 2 0 29 37 20 29 chain 42298 chr7 159138663 + 121765396 121765912 LTR10C 591 - 0 591 66269 81 0 2 329 1 73 10 0 2 84 1 0 10 chain 51897 chr7 159138663 + 121774734 121775336 L1PA5 6144 + 5539 6144 57687 92 0 1 498 1 3 11 chain 18121 chr7 159138663 + 121778336 121778638 MER44A 345 - 31 333 132538 123 8 15 75 8 0 33 17 18 23 1 0 6 0 1 8 chain 4719 chr7 159138663 + 121788663 121788865 MER6B 211 - 3 192 198294 15 0 3 5 7 4 29 111 98 35 chain 42914 chr7 159138663 + 121793678 121794257 L1PREC2 3366 - 721 1303 65524 168 2 0 197 0 1 4 1 0 107 1 3 55 7 10 37 chain 9797 chr7 159138663 + 121800414 121800537 L1PB4 2604 - 52 175 161608 123 chain 214471 chr7 159138663 + 121812478 121815414 HERV17-int 4347 + 11 4341 18195 16 1 0 50 2 1 34 2 0 26 2 1 138 1 0 89 321 5 20 1 0 87 0 1 135 0 17 17 0 1 218 3 23 178 0 1 284 1 0 120 1 2 223 0 2 360 0 1672 96 0 2 48 0 1 462 chain 2849 chr7 159138663 + 121820557 121820620 L1MA4 2864 - 249 311 227862 18 21 20 24 chain 97587 chr7 159138663 + 121825570 121827067 L1MA2 4263 + 2598 4115 37400 42 9 8 49 5 0 177 17 18 10 0 2 7 2 0 280 55 54 163 3 16 99 0 14 47 14 11 65 5 17 117 10 7 155 2 1 9 1 0 51 0 1 40 7 0 17 7 9 21 1 0 10 chain 4604 chr7 159138663 + 121836459 121836515 MLT2C1 407 + 332 388 199582 56 chain 17011 chr7 159138663 + 121842667 121843066 MLT2A2 560 - 40 553 135562 35 64 184 7 6 0 52 0 1 8 84 83 143 chain 445432 chr7 159138663 + 121843073 121848695 HERVL-int 5654 - 0 5654 8888 211 0 2 133 5 4 1006 3 0 26 8 8 35 0 1 203 5 8 15 0 1 107 4 7 264 0 3 155 1 2 226 0 5 394 19 11 107 28 51 418 2 1 196 0 1 10 1 2 285 0 2 535 0 1 100 1 0 468 0 1 49 15 17 288 7 3 292 chain 39827 chr7 159138663 + 121849159 121849889 L1MA1 4479 + 3494 4190 69583 25 2 0 5 0 1 6 1 0 76 0 1 18 11 16 72 1 0 25 3 0 16 1 0 61 35 33 10 1 0 5 0 1 77 33 29 59 1 0 44 17 4 29 2 0 35 1 0 9 25 16 4 1 0 19 chain 551335 chr7 159138663 + 121878574 121884605 L1PA2 6032 + 0 6030 1272 257 1 0 5519 1 0 241 0 1 12 chain 31276 chr7 159138663 + 121898520 121898877 L1PA4 6152 - 214 571 82025 357 chain 16926 chr7 159138663 + 121898877 121899071 L1PA4 6152 + 5946 6140 135777 194 chain 556675 chr7 159138663 + 121918969 121924999 L1PA2 6032 - 2 6032 649 1897 0 1 968 1 0 3164 chain 62885 chr7 159138663 + 121928676 121929487 L1PA8 5853 - 7 823 51496 8 0 9 69 1 0 19 2 1 32 0 1 19 1 0 8 6 5 67 2 0 46 1 0 128 0 1 100 0 1 302 chain 5964 chr7 159138663 + 121964547 121964618 MER5A 189 - 82 153 185568 71 chain 5176 chr7 159138663 + 122029893 122029950 L1PA8 5853 + 5796 5853 193276 57 chain 63472 chr7 159138663 + 122044056 122044792 L1PA4 6152 - 9 745 51255 251 1 0 117 0 1 367 chain 30072 chr7 159138663 + 122113103 122113495 MER57B1 401 + 2 401 84597 340 5 12 47 chain 9897 chr7 159138663 + 122113511 122113639 Tigger4a 237 + 109 237 161087 128 chain 21728 chr7 159138663 + 122131959 122132230 AluSc8 310 + 15 289 121289 117 0 3 154 chain 6210 chr7 159138663 + 122155796 122155874 L1PA3long 6157 + 6072 6149 183505 68 1 0 9 chain 6057 chr7 159138663 + 122202207 122202356 MLT1D 503 + 23 173 184762 45 3 0 15 54 58 32 chain 18786 chr7 159138663 + 122204283 122205116 L1PB4 2604 + 2115 2572 130718 60 316 0 59 3 7 43 189 127 102 46 44 15 chain 195067 chr7 159138663 + 122208944 122211097 L1PA3long 6157 + 4004 6157 19579 2153 chain 171142 chr7 159138663 + 122231093 122233037 L1PA5 6144 + 4185 6129 21923 1590 0 1 212 1 0 141 chain 3578 chr7 159138663 + 122251519 122251570 MADE1 96 + 46 96 214005 7 1 0 43 chain 25224 chr7 159138663 + 122265107 122265395 AluSp 311 - 15 303 103612 288 chain 39613 chr7 159138663 + 122275338 122275780 L1PA3long 6157 - 2 445 69874 58 0 1 384 chain 102194 chr7 159138663 + 122296835 122297977 L1PA5 6144 - 972 2114 36216 649 0 1 46 1 0 446 chain 81544 chr7 159138663 + 122297987 122298944 L1PA5 6144 + 5177 6140 42959 436 0 1 69 0 1 57 0 4 46 1 0 180 25 27 5 1 0 137 chain 4926 chr7 159138663 + 122313404 122313509 LTR12C 1709 - 991 1055 195981 38 41 0 26 chain 48690 chr7 159138663 + 122320791 122321337 L1PA3long 6157 + 5605 6152 59965 409 0 1 137 chain 4061 chr7 159138663 + 122326612 122326657 MER5A 189 - 114 159 206473 45 chain 16250 chr7 159138663 + 122332752 122333176 LTR18B 584 - 16 584 137615 43 7 0 20 0 2 35 13 0 7 14 41 25 7 23 44 18 143 54 105 99 32 chain 33886 chr7 159138663 + 122341267 122341646 L1PA4 6152 + 5764 6143 77797 379 chain 73408 chr7 159138663 + 122349297 122350105 L1PA3long 6157 + 5333 6149 46829 754 0 8 54 chain 13643 chr7 159138663 + 122356573 122356745 L1PA5 6144 + 5822 6144 145805 14 0 152 147 2 0 9 chain 261027 chr7 159138663 + 122361262 122364236 L1PA4 6152 + 3156 6146 15641 135 0 1 397 2 0 925 0 13 674 0 3 734 0 1 107 chain 3495 chr7 159138663 + 122365621 122365699 L1P5 443 + 75 151 215431 31 27 25 20 chain 8200 chr7 159138663 + 122386569 122386674 MER30 238 - 0 103 169951 46 3 1 56 chain 35276 chr7 159138663 + 122400633 122401027 L1PA4 6152 + 5758 6152 75824 394 chain 20155 chr7 159138663 + 122416507 122416882 THE1B-int 1605 + 0 293 126661 84 0 2 24 91 0 127 11 12 24 1 7 13 chain 137832 chr7 159138663 + 122434546 122436626 L1PA13 3608 + 1241 3548 26510 58 8 12 172 0 6 19 30 20 88 8 9 278 4 2 49 4 13 21 1 6 178 4 5 39 22 265 114 0 2 126 0 3 317 4 3 86 1 0 22 6 5 37 0 2 76 2 0 32 0 1 15 0 1 12 1 0 21 1 0 34 8 1 5 2 0 48 2 0 4 2 0 20 1 0 20 28 20 10 14 7 10 4 1 12 chain 4567 chr7 159138663 + 122443722 122443774 L1P1 4361 - 1011 1063 200031 52 chain 39590 chr7 159138663 + 122456782 122457230 LTR7 482 + 0 482 69902 264 0 31 10 0 3 174 chain 291976 chr7 159138663 + 122457232 122461343 HERVH-int 3825 + 0 3825 13905 186 3 0 26 0 11 308 5 0 39 1 0 9 2 1 9 1 0 7 100 8 14 1 0 9 7 4 26 2 1 31 62 0 25 21 0 15 2 1 49 1 0 450 15 0 456 4 31 410 2 1 370 2 4 130 1 0 489 390 274 431 chain 2501 chr7 159138663 + 122458029 122458055 HERVH-int 3825 + 699 725 233130 26 chain 39773 chr7 159138663 + 122462604 122463052 LTR7 482 + 0 482 69660 239 0 31 35 0 3 174 chain 539157 chr7 159138663 + 122474370 122480495 L1PA5 6144 + 3 6144 2959 53 0 7 509 0 1 835 1 6 889 0 2 1768 0 1 104 0 1 1625 0 1 327 3 1 11 chain 24004 chr7 159138663 + 122491585 122491950 THE1B 368 - 0 368 110311 56 8 7 61 41 46 29 1 0 169 chain 83871 chr7 159138663 + 122513242 122514301 L1PA7 6471 - 5 1089 41959 12 0 2 37 0 4 37 5 9 51 7 9 504 0 4 91 0 3 75 0 4 221 0 2 19 chain 60945 chr7 159138663 + 122514301 122515004 L1PA7 6471 + 4673 5378 52365 310 0 2 393 chain 3089 chr7 159138663 + 122520743 122520777 MER5B 177 - 125 159 223108 34 chain 42956 chr7 159138663 + 122548058 122548609 MER41A 554 - 0 554 65466 126 0 1 8 3 1 9 8 12 397 chain 9557 chr7 159138663 + 122549390 122549506 THE1B 368 + 252 368 162801 116 chain 28972 chr7 159138663 + 122551847 122552251 MLT2A1 477 + 0 393 89126 117 6 1 22 0 1 28 1 5 150 1 0 61 10 0 8 chain 19078 chr7 159138663 + 122560609 122560843 L1PA7 6471 - 4 234 129884 6 4 0 224 chain 15668 chr7 159138663 + 122593801 122593982 L1PA5 6144 - 203 384 139372 181 chain 9316 chr7 159138663 + 122607520 122607621 L1PA6 6164 - 247 348 163979 101 chain 17593 chr7 159138663 + 122607621 122607822 L1PA6 6164 + 5953 6154 134017 201 chain 82222 chr7 159138663 + 122616941 122617866 L1PA5 6144 + 4864 5789 42670 925 chain 29974 chr7 159138663 + 122617867 122618206 L1PA5 6144 + 5789 6128 84891 339 chain 81617 chr7 159138663 + 122625787 122626681 L1PA3long 6157 - 0 894 42921 894 chain 121518 chr7 159138663 + 122655827 122657274 L1PA6 6164 - 10 1471 30532 196 2 3 453 5 7 77 0 10 166 0 1 548 chain 26317 chr7 159138663 + 122666598 122666926 THE1C-int 1605 - 1277 1605 98758 328 chain 4587 chr7 159138663 + 122687655 122687729 L1M1 2793 - 112 183 199773 8 1 0 45 8 6 12 chain 38352 chr7 159138663 + 122690592 122691080 THE1B-int 1605 - 1091 1605 71644 57 0 25 185 2 3 244 chain 3961 chr7 159138663 + 122703357 122703442 L1PA15 4387 - 39 117 207975 19 5 0 14 18 16 29 chain 535370 chr7 159138663 + 122719398 122725490 L1PA5 6144 - 0 6111 3541 258 1 0 129 0 1 586 0 5 54 0 15 749 1 0 677 3 0 15 0 1 152 2 1 1196 0 2 465 1 0 879 0 1 527 0 1 397 chain 47216 chr7 159138663 + 122726898 122727484 L1PA7 6471 + 5884 6469 61033 183 0 1 196 8 10 41 2 1 143 3 0 10 chain 17986 chr7 159138663 + 122729020 122729389 THE1D 372 + 0 323 132899 13 1 3 21 19 10 108 95 56 112 chain 9124 chr7 159138663 + 122755840 122755940 L1PA5 6144 - 12 112 164948 100 chain 5748 chr7 159138663 + 122756362 122756524 MER58A 224 + 47 216 187659 32 40 44 44 27 30 19 chain 12211 chr7 159138663 + 122804731 122804900 L1PREC2 3366 + 1065 1240 151380 10 0 2 76 1 0 21 5 10 56 chain 39977 chr7 159138663 + 122806458 122806915 L1PA4 6152 - 9 469 69350 323 0 3 134 chain 32726 chr7 159138663 + 122806915 122807276 L1PA4 6152 + 5308 5669 79646 361 chain 17973 chr7 159138663 + 122828082 122828408 THE1C 375 + 16 354 132932 31 38 39 100 7 8 33 8 10 41 8 16 60 chain 21346 chr7 159138663 + 122855237 122855551 THE1B 368 + 0 345 122703 41 0 15 136 4 0 7 35 51 40 0 4 51 chain 5544 chr7 159138663 + 122860223 122860364 L1MA9 1812 - 167 308 189617 23 8 6 34 1 0 15 11 9 16 19 24 14 chain 63604 chr7 159138663 + 122867367 122868335 MER11C 1089 + 0 1063 51186 98 1 0 144 8 17 51 4 8 68 2 1 146 71 69 22 6 7 59 0 10 37 0 1 127 0 1 13 16 74 45 0 15 50 chain 26555 chr7 159138663 + 122890400 122890731 THE1C 375 - 44 375 97825 331 chain 92879 chr7 159138663 + 122938810 122939951 L1PA7 6471 - 10 1365 38693 53 0 4 614 54 262 128 0 1 194 4 5 94 chain 106758 chr7 159138663 + 122984220 122985475 L1PA5 6144 - 0 1312 35045 11 1 2 132 4 0 11 12 17 677 1 0 43 1 51 160 1 0 149 0 7 52 chain 18143 chr7 159138663 + 122989672 122989875 L1PA7 6471 + 6243 6447 132485 180 0 1 23 chain 8860 chr7 159138663 + 122999895 122999992 L1PA5 6144 + 5998 6095 166322 97 chain 13694 chr7 159138663 + 123021585 123021748 L1PA7 6471 - 2 165 145617 163 chain 110746 chr7 159138663 + 123022655 123024265 THE1C-int 1605 + 0 1605 34015 12 12 11 87 0 54 276 90 16 223 1 0 67 6 15 385 23 24 127 0 3 8 7 0 7 23 33 45 0 1 211 chain 59843 chr7 159138663 + 123043341 123044121 L1P2 5180 - 3698 4541 52904 19 0 4 29 8 13 89 0 14 332 0 1 26 0 25 132 0 15 42 2 1 4 0 1 18 1 0 78 chain 37868 chr7 159138663 + 123044147 123044597 L1PA5 6144 + 5684 6129 72322 350 5 0 95 chain 65952 chr7 159138663 + 123045695 123046689 L1PB1 5432 - 12 967 50123 16 1 0 13 1 0 21 1 0 24 2 0 11 11 8 14 21 11 6 1 0 16 6 5 39 18 16 53 2 0 8 2 0 3 2 0 10 1 0 9 1 0 23 3 0 9 3 2 355 1 0 116 8 0 153 0 4 10 chain 103272 chr7 159138663 + 123066908 123068073 L1PA3long 6157 - 1 1166 35887 4 1 0 142 1 0 81 0 2 936 chain 179449 chr7 159138663 + 123068073 123070060 L1PA3long 6157 + 3000 4987 21039 177 1 0 1054 0 1 755 chain 46008 chr7 159138663 + 123074454 123074960 L1PA3long 6157 - 0 511 62038 55 0 4 83 0 1 368 chain 543036 chr7 159138663 + 123085244 123091264 L1PA3long 6157 - 2 6157 2335 505 1 0 1010 1 2 693 0 1 2483 0 4 548 0 128 490 0 1 137 0 1 152 chain 26202 chr7 159138663 + 123110633 123110931 AluY 311 + 11 309 99189 24 1 0 91 0 1 182 chain 147230 chr7 159138663 + 123116915 123118632 L1PA6 6164 + 4427 6162 25000 222 1 0 336 2 0 481 0 1 73 0 1 228 0 12 74 0 6 152 5 6 143 chain 43937 chr7 159138663 + 123139806 123140366 MER41A 554 + 0 554 64284 87 5 6 298 17 10 153 chain 6331 chr7 159138663 + 123154874 123154949 L1PB4 2604 - 78 153 182528 75 chain 506171 chr7 159138663 + 123162764 123168394 L1PA3long 6157 - 5 6157 6454 530 0 1 1263 0 4 1908 0 4 454 0 1 182 1 384 516 1 129 623 0 1 152 chain 23106 chr7 159138663 + 123169815 123170113 AluSc5 308 + 8 304 115111 39 8 9 243 3 0 5 chain 17146 chr7 159138663 + 123170283 123170511 AluSc 308 + 74 304 135179 48 0 1 8 1 0 142 0 4 17 2 0 10 chain 38096 chr7 159138663 + 123192258 123192701 L1PA7 6471 + 6025 6470 71991 44 1 4 385 1 0 12 chain 18208 chr7 159138663 + 123217949 123218169 L1PA7 6471 - 6 222 132315 6 4 0 210 chain 3640 chr7 159138663 + 123224451 123224492 MER5B 177 + 112 153 212964 41 chain 474588 chr7 159138663 + 123229392 123235177 L1PA6 6164 - 15 5847 7893 142 8 9 5 1 0 256 0 1 428 1 0 312 1 0 7 1 3 193 0 22 807 0 1 606 0 2 165 0 13 71 0 1 449 9 24 669 0 1 101 5 0 22 1 0 53 1 0 91 1 0 298 0 1 4 1 0 5 0 1 209 0 1 352 0 17 240 1 0 117 19 0 133 chain 27113 chr7 159138663 + 123245290 123245758 L1PA15 4387 + 3909 4356 95891 23 1 0 44 2 0 128 1 0 27 1 0 54 4 3 19 31 26 27 13 10 44 3 1 12 11 6 23 chain 24993 chr7 159138663 + 123271854 123272134 AluY 311 + 4 285 104832 128 0 1 152 chain 9918 chr7 159138663 + 123272542 123272714 L1PB1 5432 - 29 188 160978 10 1 0 23 1 0 24 2 0 14 1 0 5 3 1 17 2 0 13 3 0 15 1 0 37 chain 8285 chr7 159138663 + 123299050 123299168 Tigger2 2703 - 45 164 169490 56 5 6 57 chain 23587 chr7 159138663 + 123328421 123328707 AluSp 311 - 19 303 112644 153 0 1 6 3 0 124 chain 28195 chr7 159138663 + 123339948 123340259 AluYg6 310 + 0 310 92327 131 1 0 179 chain 21907 chr7 159138663 + 123399804 123400071 L1PA7 6471 - 1 267 120597 45 0 1 112 1 0 4 2 1 103 chain 104508 chr7 159138663 + 123402308 123403788 LTR12C 1709 - 0 1709 35617 84 5 4 55 4 0 21 0 101 114 16 18 83 12 5 15 24 0 91 25 22 242 0 118 126 4 6 129 15 16 78 0 43 41 26 27 270 chain 20658 chr7 159138663 + 123410251 123410512 AluY 311 + 26 300 125113 6 0 4 32 0 7 56 1 2 148 0 1 18 chain 4904 chr7 159138663 + 123411763 123411822 MLT2B1 522 + 56 115 196244 59 chain 75982 chr7 159138663 + 123420690 123421658 LTR5_Hs 974 + 0 974 45494 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 9996 chr7 159138663 + 123430660 123430765 U6 107 - 2 107 160597 105 chain 24066 chr7 159138663 + 123435458 123435823 THE1C 375 + 0 375 109952 107 15 18 17 7 11 50 11 14 76 0 1 55 1 0 26 chain 305860 chr7 159138663 + 123472352 123476802 L1PB1 5432 - 5 4132 13174 4 1 0 5 1 0 14 1 0 13 2 0 21 1 0 24 2 0 15 7 4 18 17 7 6 3 0 13 325 6 40 1 0 69 2 0 9 6 2 11 1 0 12 1 0 8 22 23 94 0 17 70 0 1 79 1 2 148 2 3 36 0 1 24 3 0 184 2 0 120 4 1 283 0 1 307 2 0 8 5 8 194 0 2 27 0 4 473 2 0 127 10 13 40 2 3 13 4 2 75 7 6 72 1 0 87 3 4 45 5 6 30 0 1 236 0 1 10 1 0 49 0 3 35 1 0 246 0 1 48 3 0 298 0 2 12 2 0 138 0 4 10 7 9 90 chain 56850 chr7 159138663 + 123477592 123478230 L1PA4 6152 - 11 657 54631 188 0 8 450 chain 513865 chr7 159138663 + 123479040 123485208 L1PA6 6164 - 2 6160 5793 6 6 0 19 0 1 121 1 0 8 3 4 296 0 2 397 2 0 288 1 2 1148 0 1 64 1 0 91 2 0 15 11 9 160 1 0 192 10 11 142 1 0 11 2 0 1519 0 2 183 0 1 22 7 8 512 0 4 107 17 0 66 0 1 182 1 0 47 0 2 200 16 20 23 11 13 23 0 2 233 chain 513855 chr7 159138663 + 123491301 123497695 L1PA7 6471 - 5 6471 5794 7 2 0 156 0 2 4 1 0 277 9 11 309 1 3 82 1 0 13 0 1 393 1 0 4 0 1 44 0 2 364 0 1 242 0 4 258 0 1 8 0 4 94 0 1 478 0 1 148 0 4 190 14 15 60 0 1 649 3 23 282 1 2 87 0 1 26 0 1 51 0 1 10 0 1 40 2 0 5 4 6 699 0 8 243 0 1 8 0 2 51 9 10 38 6 11 20 6 8 387 1 2 135 0 1 60 1 4 7 1 0 36 0 1 366 chain 3497 chr7 159138663 + 123528702 123528785 LTR49 580 + 476 564 215392 5 1 0 22 1 6 14 17 18 23 chain 13770 chr7 159138663 + 123533855 123534194 THE1D 372 + 0 333 145365 53 45 37 30 3 9 5 2 0 5 3 0 27 72 73 94 chain 550118 chr7 159138663 + 123534552 123540699 L1PA3long 6157 + 0 6157 1434 838 5 4 348 0 3 388 0 3 1081 0 4 3448 0 1 39 chain 29663 chr7 159138663 + 123549526 123549836 AluYa5 310 - 0 310 85991 310 chain 21381 chr7 159138663 + 123563952 123564533 MER51E 476 - 2 476 122583 44 0 24 102 4 5 21 2 1 21 1 0 46 6 0 7 70 0 33 1 2 32 173 118 18 chain 55975 chr7 159138663 + 123566526 123567282 MER4E 760 - 0 760 55137 73 1 0 255 1 0 53 8 10 19 18 17 70 0 1 32 8 10 50 1 0 30 0 2 114 0 1 23 chain 19972 chr7 159138663 + 123573122 123573397 L1PA8 5853 - 1 271 127228 91 4 3 16 5 4 59 1 0 72 2 0 25 chain 26326 chr7 159138663 + 123622238 123622599 THE1B 368 - 0 368 98715 168 6 0 26 1 0 23 1 0 84 8 23 44 chain 103380 chr7 159138663 + 123629220 123630680 L1PB1 5432 - 8 2876 35903 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 9 13 10 8 0 2 9 31 18 9 1 0 44 1 0 16 2 1 53 2 0 9 16 11 9 1 0 23 5 0 8 1 4 482 9 6 11 0 1446 316 2 0 286 chain 31391 chr7 159138663 + 123632307 123632756 MER4A1 472 + 0 472 81836 175 1 0 41 10 31 144 14 16 21 1 2 42 chain 3834 chr7 159138663 + 123653136 123653182 LTR44 473 + 427 473 209855 46 chain 23297 chr7 159138663 + 123654027 123654392 THE1D 372 + 3 372 114222 101 2 0 7 3 4 20 0 4 14 38 41 146 1 0 7 1 0 25 chain 43740 chr7 159138663 + 123664413 123664909 L1PA4 6152 + 5653 6152 64518 165 0 1 189 0 1 94 0 1 48 chain 8312 chr7 159138663 + 123687443 123687535 L1PA5 6144 - 12 104 169320 92 chain 49472 chr7 159138663 + 123704519 123705422 LTR12_ 688 + 0 688 59409 166 0 1 79 9 6 7 0 3 112 12 11 15 12 16 86 0 1 82 220 0 103 chain 3457 chr7 159138663 + 123714546 123714602 L1MA4 2864 + 2747 2801 216034 18 3 1 35 chain 19354 chr7 159138663 + 123722956 123723271 MER1B 344 + 36 339 129059 67 10 0 30 0 2 81 4 0 35 1 0 6 31 32 50 chain 22592 chr7 159138663 + 123726029 123726395 THE1A 353 + 0 353 117620 79 19 11 17 19 18 74 20 16 138 chain 549630 chr7 159138663 + 123734160 123740264 L1PA3long 6157 - 15 6157 1503 1776 0 4 1191 3 1 1880 0 36 1254 chain 82004 chr7 159138663 + 123742940 123743971 MER11C 1089 + 0 1054 42756 227 0 5 32 0 3 323 8 9 175 0 8 82 0 5 20 0 1 164 chain 238852 chr7 159138663 + 123774783 123778745 L1MA1 4479 - 570 4251 16838 47 19 16 20 1 0 61 11 10 16 2 0 25 1 0 129 9 4 53 343 0 10 2 0 129 3 0 54 8 7 13 5 0 36 43 39 57 9 5 21 2 0 58 4 0 114 8 6 21 1 0 93 1 0 61 2 1 32 2 0 103 2 1 47 11 12 6 1 0 122 1 4 19 3 57 46 0 1 178 0 1 4 10 13 54 0 9 8 1 9 196 0 1 68 1 2 29 0 1 85 23 24 50 0 1 367 9 10 108 0 1 4 6 4 95 1 2 85 2 1 24 0 2 5 6 0 95 8 13 13 49 57 7 0 2 24 0 4 12 2 5 243 1 5 60 8 12 82 2 0 50 chain 31518 chr7 159138663 + 123775184 123775520 L1PA2 6032 + 5695 6031 81615 336 chain 14245 chr7 159138663 + 123785091 123785356 MER50 708 - 421 683 143741 11 0 4 165 72 65 17 chain 11029 chr7 159138663 + 123791540 123791724 MER30 238 - 0 202 156097 48 4 1 31 9 13 15 6 23 71 chain 7311 chr7 159138663 + 123797342 123797435 MLT1B 390 + 280 373 175362 93 chain 249881 chr7 159138663 + 123811762 123814806 L1PA7 6471 - 12 3058 16263 92 0 3 5 3 0 66 4 0 671 4 0 37 0 1 996 0 1 578 2 0 146 17 27 423 chain 39674 chr7 159138663 + 123833278 123833870 MLT2A2 560 - 0 560 69795 40 28 0 14 16 4 89 3 14 184 5 0 6 0 5 23 0 1 18 3 0 117 1 0 45 chain 9872 chr7 159138663 + 123833956 123834093 L1P4 1494 - 107 242 161221 20 1 0 16 2 1 98 chain 36438 chr7 159138663 + 123850572 123851032 L1PA6 6164 - 2 464 74319 10 0 3 133 0 2 6 7 0 107 0 1 109 2 3 81 0 2 5 chain 43915 chr7 159138663 + 123851203 123851930 L1PB1 5432 + 4732 5404 64317 69 5 1 63 1 3 231 42 19 20 2 1 7 1 0 10 2 0 3 2 0 10 2 0 51 2 1 16 1 0 42 1 0 22 21 9 17 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 chain 11860 chr7 159138663 + 123858915 123859065 THE1B 368 - 19 168 152790 56 5 4 89 chain 9035 chr7 159138663 + 123910744 123910879 Tigger2 2703 - 305 445 165417 63 12 15 29 0 2 31 chain 81600 chr7 159138663 + 123954938 123955828 L1PA3long 6157 - 0 895 42925 282 0 1 586 0 4 22 chain 10636 chr7 159138663 + 123961991 123962306 L1MA4 2864 + 2506 2802 157666 8 1 0 100 170 152 36 chain 24751 chr7 159138663 + 124025450 124025766 THE1A 353 + 22 343 106167 62 0 1 25 1 0 148 0 2 33 0 3 47 chain 10861 chr7 159138663 + 124051288 124051454 Tigger3d 321 - 99 272 156741 33 0 5 41 16 17 61 0 1 15 chain 531884 chr7 159138663 + 124102791 124108921 L1PA4 6152 - 11 6140 3975 140 1 2 1059 11 5 577 0 8 158 0 1 511 1 0 394 1 0 651 6 9 154 15 0 103 0 1 842 0 1 262 14 21 95 1 0 159 0 1 975 chain 121358 chr7 159138663 + 124113558 124114909 L1PA4 6152 + 4799 6151 30577 501 0 1 850 chain 4797 chr7 159138663 + 124115013 124115071 MER6 865 - 190 248 197387 58 chain 37552 chr7 159138663 + 124132781 124133235 L1PA7 6471 + 6013 6467 72752 454 chain 157497 chr7 159138663 + 124134558 124136331 L1PA4 6152 - 0 1776 23662 1607 0 3 166 chain 29738 chr7 159138663 + 124157472 124158478 THE1D-int 1627 + 0 404 85702 10 0 2 118 607 2 83 0 1 188 chain 20685 chr7 159138663 + 124157651 124157897 L1PA5 6144 + 5894 6139 125016 102 1 0 143 chain 13796 chr7 159138663 + 124169981 124170218 MSTA-int 1630 - 1377 1630 145285 120 4 9 31 14 24 40 16 17 12 chain 29636 chr7 159138663 + 124170259 124170575 AluYb8 318 + 0 316 86109 316 chain 288642 chr7 159138663 + 124218602 124221806 L1PA3long 6157 - 0 3205 14112 330 1 4 769 6 0 690 0 4 1408 chain 3983 chr7 159138663 + 124227386 124227432 MADE1 96 - 5 51 207642 46 chain 8487 chr7 159138663 + 124233413 124233506 L1PA3long 6157 - 15 108 168374 93 chain 24099 chr7 159138663 + 124235339 124235624 AluSp 311 + 0 302 109745 17 0 17 268 chain 3339 chr7 159138663 + 124247064 124247106 MER3 215 - 0 42 218233 42 chain 380709 chr7 159138663 + 124255136 124260069 HERVL-int 5654 + 0 5031 10730 113 1 0 252 10 11 203 22 40 35 0 1 448 9 8 7 0 1 296 9 10 70 0 2 92 0 6 129 0 2 37 0 7 559 8 9 302 0 3 14 26 7 621 19 4 95 8 0 113 1 0 6 1 11 577 1 81 170 2 3 260 0 1 117 0 1 105 5 8 24 7 11 159 chain 34552 chr7 159138663 + 124260102 124260743 L1PB1 5432 + 4862 5430 76830 9 0 1 210 0 3 18 45 3 8 3 0 24 39 31 50 1 0 18 1 0 6 0 1 36 1 0 16 4 1 11 9 0 16 11 8 14 2 0 24 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 37588 chr7 159138663 + 124261279 124261686 L1PA3long 6157 - 0 407 72702 407 chain 20226 chr7 159138663 + 124272946 124273302 THE1B 368 + 1 368 126446 101 23 24 46 1 0 26 1 0 4 30 41 33 11 12 80 chain 6106 chr7 159138663 + 124305943 124306014 MER41A 554 + 399 470 184374 71 chain 21948 chr7 159138663 + 124369210 124369609 LTR7 482 + 0 482 120431 22 76 64 15 15 14 17 2 53 26 0 11 11 0 31 41 0 3 174 chain 278950 chr7 159138663 + 124369611 124373119 HERVH-int 3825 + 0 3825 14695 45 0 1 273 15 14 97 0 14 53 11 153 6 1 0 29 2 0 12 1 0 13 66 1 68 1 0 213 0 1 140 0 1 95 16 1 200 9 0 40 1 0 215 4 31 36 0 1 247 0 4 20 0 3 274 0 1 24 0 1 563 0 1 179 9 11 39 8 218 260 0 2 85 0 2 138 chain 30757 chr7 159138663 + 124374379 124374788 LTR7 482 + 1 482 82942 68 8 46 109 0 1 5 0 31 104 1 2 79 0 1 35 chain 15464 chr7 159138663 + 124379894 124380097 MER30 238 - 14 236 140003 84 0 2 7 6 23 106 chain 3443 chr7 159138663 + 124420545 124420586 MLT2D 439 + 399 439 216309 33 1 0 7 chain 43334 chr7 159138663 + 124420891 124421437 MLT2A2 560 - 0 560 64997 147 0 11 193 12 15 194 chain 33322 chr7 159138663 + 124429711 124430136 MER57A1 433 + 0 433 78702 105 0 5 12 0 1 83 0 1 75 0 1 150 chain 25155 chr7 159138663 + 124442487 124442782 AluSg 306 + 9 305 103982 270 0 1 25 chain 3138 chr7 159138663 + 124445942 124445992 MADE1 96 - 30 96 222210 11 2 18 37 chain 10391 chr7 159138663 + 124450882 124451066 LTR54 533 + 353 533 158735 56 5 0 13 32 33 78 chain 105895 chr7 159138663 + 124474006 124475304 L1PA7 6471 + 5151 6467 35283 81 0 3 45 0 3 268 0 4 47 8 15 513 0 1 305 0 1 15 1 0 15 chain 24779 chr7 159138663 + 124478664 124478957 AluSp 311 - 17 310 106001 293 chain 25461 chr7 159138663 + 124484510 124484809 AluY 311 + 2 305 102402 130 0 1 8 1 2 123 0 2 37 chain 120748 chr7 159138663 + 124500684 124502151 L1PA7 6471 - 22 1493 30779 318 0 1 317 0 2 193 0 4 93 1 0 47 18 16 480 chain 3845 chr7 159138663 + 124513348 124513400 L1MA8 2339 - 2062 2116 209708 12 0 2 40 chain 21684 chr7 159138663 + 124517621 124517923 AluY 311 + 13 311 121449 20 10 14 76 1 0 8 1 2 112 8 0 66 chain 505641 chr7 159138663 + 124540587 124546704 L1PA5 6144 + 1 6144 6484 134 10 24 793 25 0 219 22 13 78 1 6 569 0 1 466 0 1 411 0 2 158 1 0 380 0 7 142 0 2 357 0 21 453 1 0 109 0 4 172 2 1 100 0 14 384 5 0 272 1 0 309 2 1 522 1 0 18 chain 1740 chr7 159138663 + 124581186 124581397 THE1C-int 1605 + 195 425 125680 92 1 12 21 0 2 5 0 6 92 chain 26235 chr7 159138663 + 124581397 124581778 LTR8 732 - 0 384 99073 62 0 2 91 1 0 4 4 5 25 21 17 17 0 5 156 chain 1039 chr7 159138663 + 124583544 124583670 THE1C-int 1605 + 1472 1597 125680 16 8 7 102 chain 108881 chr7 159138663 + 124597501 124599081 THE1B-int 1605 + 0 1594 34468 19 15 16 270 0 1 124 38 21 257 33 50 71 53 58 155 3 0 242 14 22 102 1 5 111 9 8 57 1 0 5 chain 6668 chr7 159138663 + 124599310 124599405 THE1B 368 + 234 327 179925 6 1 0 63 2 0 7 1 2 15 chain 146881 chr7 159138663 + 124602168 124604006 HERVH-int 3825 - 0 1831 25037 284 2 0 276 21 22 223 5 4 144 0 2 68 11 0 153 0 3 220 0 1 7 5 4 5 0 1 414 chain 277032 chr7 159138663 + 124614614 124617925 L1PA6 6164 - 2 3441 14812 262 0 3 178 16 8 395 0 1 240 4 1 212 0 110 1061 5 26 141 0 1 91 0 2 240 0 1 466 chain 88805 chr7 159138663 + 124617925 124619232 L1P2 5180 + 1790 3040 39999 214 1 0 4 0 1 171 0 2 130 24 7 397 211 168 146 0 1 9 chain 541833 chr7 159138663 + 124619527 124625544 L1PA3long 6157 - 1 6157 2535 5 0 2 1035 0 1 1283 0 4 556 0 3 5 0 1 1577 0 2 775 0 127 626 0 1 148 2 0 5 chain 6007 chr7 159138663 + 124629054 124629123 MLT2A2 560 - 491 560 185181 69 chain 33336 chr7 159138663 + 124634540 124634930 L1PA7 6471 - 1599 1989 78401 390 chain 123604 chr7 159138663 + 124634930 124636459 L1PA7 6471 + 4876 6413 29841 574 1 0 130 0 1 42 0 6 152 8 9 46 7 8 308 0 2 154 7 0 8 1 6 91 chain 58440 chr7 159138663 + 124662669 124663436 THE1B-int 1605 + 797 1587 53721 215 7 9 126 21 42 398 chain 31210 chr7 159138663 + 124669864 124670371 L1PB2 3958 - 120 610 82144 7 0 1 49 42 39 61 1 0 63 1 0 73 1 0 93 4 0 14 2 0 57 9 4 12 3 2 15 chain 31335 chr7 159138663 + 124680564 124680929 L1PA7 6471 + 6095 6461 81921 225 1 2 139 chain 30165 chr7 159138663 + 124682348 124682737 L1PA8 5853 + 5468 5853 84282 8 0 3 85 1 0 44 2 0 70 12 10 52 2 1 19 1 0 93 chain 338530 chr7 159138663 + 124686068 124690154 L1P3 4156 + 0 4105 11939 135 0 11 105 1 0 69 1 0 524 1 0 69 0 1 200 0 1 41 0 6 40 1 0 1392 8 4 39 1 2 52 2 1 833 0 1 13 0 5 64 0 1 284 0 1 211 chain 26811 chr7 159138663 + 124701207 124701566 L1PA8 5853 - 0 351 96939 93 1 0 19 2 1 49 7 5 7 1 0 71 2 0 44 1 0 62 chain 11366 chr7 159138663 + 124737883 124738042 L1PA8 5853 + 5695 5853 154831 34 12 12 19 1 0 93 chain 58429 chr7 159138663 + 124743702 124744433 L1PA8 5853 + 5128 5853 53729 139 0 1 296 1 0 46 2 0 65 5 4 9 2 1 51 2 1 19 1 0 93 chain 38405 chr7 159138663 + 124746326 124746754 L1PA5 6144 + 5684 6112 71569 428 chain 19884 chr7 159138663 + 124752245 124752530 Tigger3b 1229 - 700 987 127537 154 0 1 38 6 8 33 8 7 46 chain 173460 chr7 159138663 + 124763010 124765107 L1PA7 6471 - 3 2103 21657 9 2 0 45 2 1 30 0 1 59 1 2 648 0 1 55 1 3 56 2 0 280 0 1 360 0 2 41 3 4 82 1 0 420 chain 27397 chr7 159138663 + 124779201 124779513 AluYb8 318 - 8 318 94982 247 2 0 63 chain 4094 chr7 159138663 + 124782985 124783042 MADE1 96 - 4 87 206021 35 1 27 21 chain 220630 chr7 159138663 + 124819624 124822032 L1HS 6032 - 3622 6031 17842 1088 0 1 1320 chain 21106 chr7 159138663 + 124840602 124840857 AluSc5 308 - 43 298 123535 255 chain 22611 chr7 159138663 + 124848981 124849326 THE1B 368 + 0 368 117534 40 0 15 114 1 0 28 43 53 56 1 0 62 chain 23901 chr7 159138663 + 124849456 124849740 AluY 311 + 15 299 110906 117 0 1 111 1 0 55 chain 76693 chr7 159138663 + 124861223 124862191 LTR5_Hs 974 - 0 974 45127 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 25842 chr7 159138663 + 124883765 124884074 AluY 311 + 10 306 100685 122 13 0 174 chain 32838 chr7 159138663 + 124898881 124899368 LTR7 482 + 0 470 79478 130 51 0 89 1 0 4 5 38 158 14 16 35 chain 301853 chr7 159138663 + 124900662 124904242 HERVH-int 3825 - 9 3825 13328 478 8 218 289 0 1 684 0 1 37 0 2 96 0 4 290 4 31 462 15 0 442 0 3 12 0 2 7 0 1 57 2 1 42 1 0 25 3 0 9 6 18 24 1 0 10 1 0 38 5 0 532 chain 39565 chr7 159138663 + 124904244 124904691 LTR7 482 - 0 482 69941 92 0 4 94 0 31 261 chain 22783 chr7 159138663 + 124907143 124907488 THE1C 375 + 16 363 116664 113 23 24 23 5 6 134 1 2 32 1 0 13 chain 53948 chr7 159138663 + 124914813 124915502 LTR12 884 + 0 884 56406 23 2 1 31 0 41 120 0 1 97 0 24 39 2 0 139 1 0 195 1 134 39 chain 11131 chr7 159138663 + 124916884 124917016 THE1B-int 1605 + 1473 1605 155697 132 chain 12025 chr7 159138663 + 124928650 124928798 THE1D 372 + 224 372 152096 148 chain 4051 chr7 159138663 + 124934025 124934081 L1MA6 2487 - 95 148 206621 15 3 0 38 chain 5223 chr7 159138663 + 124938827 124938984 LTR12D 1347 - 187 311 192806 32 61 30 15 1 0 27 8 7 13 chain 320571 chr7 159138663 + 124949489 124953299 HERV9-int 5642 + 1027 4824 12574 80 6 4 37 1 2 423 0 2 760 0 3 5 7 5 1162 19 0 704 0 1 515 0 3 38 0 1 41 1 0 11 chain 59892 chr7 159138663 + 124954894 124955727 LTR12 884 + 0 884 52878 74 0 132 148 0 22 90 0 1 94 103 0 148 1 0 175 chain 13749 chr7 159138663 + 124969878 124970057 Tigger3a 397 - 70 258 145445 28 1 10 150 chain 212457 chr7 159138663 + 124971720 124974247 L1PA6 6164 + 3600 6158 18329 23 0 9 268 0 19 127 1 0 195 0 2 604 0 5 1137 11 5 9 1 4 151 chain 28571 chr7 159138663 + 124982457 124982769 AluYk4 311 + 0 311 90867 134 1 0 177 chain 21306 chr7 159138663 + 124992606 124992998 L1PA16 3655 + 3147 3540 122841 55 26 25 63 2 0 74 2 0 4 0 1 14 46 49 75 4 6 27 chain 128690 chr7 159138663 + 125023704 125025118 L1PA4 6152 - 818 2233 28390 386 0 1 1028 chain 71359 chr7 159138663 + 125025118 125025920 L1PA4 6152 + 5349 6151 47767 35 0 1 617 1 0 149 chain 140960 chr7 159138663 + 125055343 125056921 L1PA4 6152 + 4561 6143 25990 737 0 4 841 chain 330896 chr7 159138663 + 125058900 125063549 L1PB1 5432 + 791 5401 12168 5 0 1 350 72 73 33 2 0 156 2 1 127 0 4 625 0 1 60 0 1 267 5 0 8 0 2 35 2 1 69 4 9 6 5 0 215 1 2 152 0 1 9 22 15 120 0 1 106 7 3 107 0 1 371 2 4 307 0 9 315 17 0 97 0 1 14 7 11 142 10 11 44 1 0 101 0 1 18 36 33 267 16 14 17 1 0 13 1 0 11 4 0 9 2 0 53 2 1 10 6 5 44 1 0 16 1 0 6 16 6 14 0 1 4 7 4 15 2 0 19 6 5 21 1 0 10 chain 15486 chr7 159138663 + 125070140 125070468 MSTA 426 + 0 380 139935 100 13 37 67 66 63 24 1 31 14 11 12 32 chain 16700 chr7 159138663 + 125087588 125087776 L1PA4 6152 + 5955 6143 136405 188 chain 63582 chr7 159138663 + 125095614 125096399 LTR17 781 - 0 781 51196 46 0 1 358 13 8 41 1 0 210 5 6 111 chain 21280 chr7 159138663 + 125117801 125118092 L1PA8 5853 - 3 291 122928 77 14 13 65 6 7 9 1 0 71 2 0 46 chain 36167 chr7 159138663 + 125145196 125145658 MER41A 554 - 89 554 74684 105 4 6 300 0 1 53 chain 10626 chr7 159138663 + 125147429 125147549 L1PA6 6164 + 6042 6162 157704 120 chain 4754 chr7 159138663 + 125184938 125184996 ERVL-int 1947 + 1397 1455 197872 58 chain 3466 chr7 159138663 + 125197893 125197930 MSTA 426 - 2 39 215866 37 chain 13152 chr7 159138663 + 125223108 125223295 MLT2A2 560 - 367 560 147639 15 5 10 26 1 2 140 chain 51303 chr7 159138663 + 125224997 125225578 L1PA4 6152 + 5571 6151 58109 122 1 0 458 chain 8088 chr7 159138663 + 125260814 125260907 L1PA4 6152 + 6053 6146 170553 93 chain 30091 chr7 159138663 + 125265108 125265426 AluYb8 318 - 0 318 84523 318 chain 24436 chr7 159138663 + 125294790 125295089 L1PA7 6471 - 10 309 107876 299 chain 384514 chr7 159138663 + 125348726 125355770 L1PB1 5432 - 28 5374 10629 13 9 4 17 1 0 22 69 52 15 1 0 44 1 0 15 1 0 55 2 0 5 20 15 33 215 11 305 7 5 163 3 0 5 7 8 166 0 1 219 1334 0 269 1 0 107 1 0 118 32 4 446 1 2 428 0 1 14 5 0 6 0 5 8 110 1 4 1 0 186 31 27 51 0 2 26 1 2 5 1 0 21 14 11 1056 50 39 302 7 21 128 0 6 33 0 1 164 0 4 91 0 2 49 12 16 173 14 13 331 chain 116499 chr7 159138663 + 125350153 125351471 L1PA5 6144 + 4487 6144 32279 58 0 340 1104 1 0 155 chain 75760 chr7 159138663 + 125377568 125378627 MER11A 1151 - 0 1151 45614 59 8 7 87 9 8 97 1 33 16 0 28 69 0 4 37 3 4 11 6 9 377 0 11 60 0 4 30 1 0 115 5 13 34 9 13 25 chain 4368 chr7 159138663 + 125384628 125384684 MER2 342 - 164 217 202335 5 3 0 48 chain 16637 chr7 159138663 + 125447479 125447796 THE1C 375 + 0 332 136565 14 9 0 33 0 6 17 12 16 20 1 0 69 52 67 90 chain 18628 chr7 159138663 + 125468578 125468821 THE1B-int 1605 + 1359 1598 131143 177 5 1 61 chain 22908 chr7 159138663 + 125468828 125469204 THE1B 368 + 0 368 116073 15 2 0 32 0 1 60 14 15 43 34 27 94 7 6 75 chain 55998 chr7 159138663 + 125469204 125470050 THE1B-int 1605 - 715 1578 55121 409 31 95 88 0 1 10 27 33 132 54 0 95 chain 18417 chr7 159138663 + 125471966 125472158 AluYg6 310 - 11 203 131724 192 chain 26433 chr7 159138663 + 125473956 125474317 MER57B1 401 + 3 392 98299 56 1 0 247 5 35 22 0 1 7 2 0 21 chain 120185 chr7 159138663 + 125477454 125478808 L1PA4 6152 - 0 1358 30992 843 1 5 510 chain 44582 chr7 159138663 + 125478808 125479297 L1PA4 6152 + 4288 4777 63408 489 chain 16989 chr7 159138663 + 125520341 125520550 L1PA5 6144 + 5934 6144 135617 18 3 4 188 chain 26946 chr7 159138663 + 125523508 125523798 L1PA2 6032 - 1090 1380 95822 290 chain 98674 chr7 159138663 + 125523798 125524882 L1PA2 6032 + 4948 6032 37104 1084 chain 37593 chr7 159138663 + 125550018 125550467 LTR7 482 + 0 482 72693 246 0 31 142 12 14 49 chain 287017 chr7 159138663 + 125550469 125554076 HERVH-int 3825 + 0 3816 14221 17 0 1 123 0 1 70 0 11 277 37 89 14 51 1 14 1 0 12 4 1 24 4 3 16 3 23 20 42 1 11 2 1 49 1 0 444 15 0 462 4 31 1389 19 229 482 chain 36480 chr7 159138663 + 125555344 125555793 LTR7 482 + 0 482 74263 263 1 32 124 12 14 49 chain 8605 chr7 159138663 + 125557610 125557796 LTR7 482 + 0 224 167699 69 6 95 21 51 0 39 chain 14672 chr7 159138663 + 125557804 125558006 LTR7 482 + 264 469 142355 101 1 2 52 12 14 36 chain 302239 chr7 159138663 + 125558038 125561876 HERVH-int 3825 + 16 3825 13309 33 7 3 483 6 1 34 2 1 9 1 0 12 38 27 12 66 0 18 3 23 26 2 1 79 0 1 322 0 2 18 0 1 309 9 0 348 0 1 224 1 5 40 47 52 233 37 84 36 21 7 409 0 2 953 chain 8738 chr7 159138663 + 125563754 125563940 LTR7 482 + 0 224 166986 69 6 95 21 51 0 39 chain 12890 chr7 159138663 + 125563948 125564103 LTR7 482 + 264 419 148666 155 chain 3215 chr7 159138663 + 125564115 125564151 LTR7 482 + 433 469 220652 36 chain 27481 chr7 159138663 + 125568840 125569161 L1PA7 6471 + 6144 6466 94711 169 0 1 152 chain 38955 chr7 159138663 + 125572760 125573201 L1PA4 6152 - 1 445 70796 389 0 1 37 0 2 15 chain 14055 chr7 159138663 + 125578286 125578589 THE1B 368 + 0 307 144365 142 115 119 46 chain 16541 chr7 159138663 + 125580748 125580950 HERVL-int 5654 + 2722 2923 136812 196 1 0 5 chain 15818 chr7 159138663 + 125583282 125583480 MLT2A2 560 + 0 196 138904 180 2 0 16 chain 20715 chr7 159138663 + 125587967 125588228 AluY 311 + 20 275 124914 112 0 1 104 9 2 36 chain 25547 chr7 159138663 + 125631747 125632013 AluYa5 310 + 37 303 102006 266 chain 19570 chr7 159138663 + 125634748 125634986 L1PA6 6164 + 5924 6162 128461 238 chain 8462 chr7 159138663 + 125637092 125637195 THE1A 353 + 0 103 168502 103 chain 89198 chr7 159138663 + 125637254 125638338 THE1A-int 1579 + 490 1574 39928 7 1 0 18 5 6 1053 chain 158380 chr7 159138663 + 125648806 125650829 L1PA8 5853 - 0 2027 23544 93 1 0 19 2 1 45 8 7 9 1 0 71 2 0 44 1 0 169 3 5 381 2 0 7 0 3 8 0 4 180 2 0 6 0 1 31 5 6 465 0 1 80 1 2 5 1 0 233 0 3 148 chain 21255 chr7 159138663 + 125674124 125674421 L1P3 4156 + 3396 3692 123005 86 0 1 4 17 17 11 19 17 160 chain 3042 chr7 159138663 + 125681268 125681322 MER52A 1651 + 786 840 224182 4 1 0 22 6 7 21 chain 23875 chr7 159138663 + 125727768 125728152 THE1C 375 - 0 375 111058 25 1 0 107 6 0 45 6 0 14 6 9 58 12 12 14 19 20 71 chain 76697 chr7 159138663 + 125808213 125809181 LTR5_Hs 974 + 0 974 45125 289 0 1 177 0 1 188 1 0 163 8 15 17 22 20 103 chain 43763 chr7 159138663 + 125812735 125813247 MER9a1 513 + 0 513 64494 508 0 1 4 chain 7830 chr7 159138663 + 125834320 125834465 MSTB 430 - 13 162 172127 59 2 1 20 25 30 39 chain 126998 chr7 159138663 + 125834473 125835899 L1PA5 6144 + 4715 6142 28815 1274 0 1 152 chain 8313 chr7 159138663 + 125854364 125854529 MSTA 426 + 7 194 169310 75 32 50 10 10 14 38 chain 23879 chr7 159138663 + 125885644 125885911 AluY 311 + 38 305 111030 267 chain 125146 chr7 159138663 + 125918074 125919657 L1P2 5180 - 2868 4586 29345 49 0 2 390 1 145 229 0 1 28 12 0 22 1 0 75 12 14 154 1 0 4 6 7 399 1 0 6 1 0 67 1 2 124 chain 170288 chr7 159138663 + 125919673 125921707 L1P1 4361 - 20 2053 22017 12 2 1 23 1 0 157 10 9 629 0 1 1148 0 1 52 chain 480346 chr7 159138663 + 125932223 125938415 L1PA8A 6298 + 36 6292 7719 4 1 0 16 1 0 11 3 0 4 2 0 7 6 1 20 42 31 18 1 0 9 24 21 9 2 0 17 2 0 5 16 14 6 1 0 7 1 0 6 2 1 14 4 0 9 2 0 41 7 6 17 2 0 5 2 0 4 4 0 68 2 0 15 1 0 10 1 0 5 1 0 67 8 7 755 0 3 313 0 1 141 8 6 126 0 1 235 0 1 295 0 2 181 0 9 95 1 0 87 4 5 127 0 1 70 0 4 178 0 6 213 1 0 23 6 3 6 0 5 400 12 10 56 0 1 342 0 7 127 0 1 181 0 1 132 0 42 156 0 8 17 0 14 49 0 22 47 0 1 356 1 3 112 3 0 804 chain 21251 chr7 159138663 + 125968195 125968543 THE1B 368 + 0 368 123017 44 6 21 71 29 36 30 2 0 68 0 1 28 14 13 56 chain 52872 chr7 159138663 + 125984364 125984939 L1PA3long 6157 - 1758 2333 57038 575 chain 158628 chr7 159138663 + 125984939 125986678 L1PA3long 6157 + 4417 6157 23515 1732 0 1 7 chain 8743 chr7 159138663 + 126013437 126013532 L1PA5 6144 - 16 111 166953 95 chain 62282 chr7 159138663 + 126024842 126025550 L1PA4 6152 + 5443 6151 51762 708 chain 29052 chr7 159138663 + 126031776 126032093 AluYb8 318 - 8 318 88754 53 7 0 257 chain 167436 chr7 159138663 + 126046647 126048522 L1PA3long 6157 - 0 1880 22345 223 1 6 1651 chain 3744 chr7 159138663 + 126079421 126079462 Tigger3b 1229 + 53 94 211273 41 chain 34200 chr7 159138663 + 126092108 126092498 L1PA5 6144 + 5754 6144 77351 390 chain 22574 chr7 159138663 + 126107059 126107325 L1PA7 6471 - 10 276 117697 17 0 1 4 1 0 244 chain 202935 chr7 159138663 + 126110246 126112487 L1PA3long 6157 - 0 2247 19001 856 0 1 942 0 4 272 0 1 171 chain 3639 chr7 159138663 + 126126723 126126767 Charlie1a 1436 - 82 126 212999 44 chain 25737 chr7 159138663 + 126201686 126201969 L1PA4 6152 - 5 287 101133 255 1 0 27 chain 28789 chr7 159138663 + 126207280 126207610 L1PA4 6152 + 5810 6143 89943 82 1 0 146 0 1 95 0 3 6 chain 201528 chr7 159138663 + 126225581 126227888 L1PA5 6144 + 3828 6144 19104 800 0 1 18 0 1 177 1 0 172 1 2 294 5 9 583 1 0 90 0 1 16 1 4 148 chain 23932 chr7 159138663 + 126236202 126236560 L1PA15 4387 - 206 558 110742 21 1 0 32 1 0 24 1 0 64 1 0 23 6 7 78 1 0 40 3 1 62 chain 166785 chr7 159138663 + 126240987 126242796 L1PA2 6032 - 3 1812 22422 1809 chain 80351 chr7 159138663 + 126242796 126243659 L1PA2 6032 + 3373 4236 43456 863 chain 536256 chr7 159138663 + 126253455 126259576 L1PA5 6144 + 3 6142 3414 475 12 10 93 0 2 353 0 1 72 1 0 132 8 11 2014 1 0 35 0 1 1327 0 2 126 1 0 640 0 4 689 8 1 8 0 7 20 0 10 106 chain 144158 chr7 159138663 + 126270377 126272429 L1PA11 4918 + 2463 4504 25451 36 4 5 74 5 0 140 0 3 81 2 1 5 0 1 162 0 1 77 2 0 215 5 0 7 42 44 55 0 3 293 1 0 18 6 5 103 3 4 38 5 6 9 0 1 213 1 2 266 10 5 20 39 38 13 2 0 67 2 0 14 1 0 16 chain 224619 chr7 159138663 + 126289675 126292410 HERVL-int 5654 + 2892 5646 17624 90 1 3 381 15 7 59 4 5 61 0 11 247 2 1 1467 0 1 52 0 6 176 0 4 154 0 3 26 chain 27342 chr7 159138663 + 126308994 126309386 L1PA8 5853 + 5467 5853 95135 97 1 0 44 2 0 71 1 0 13 5 4 44 2 1 17 9 8 76 0 1 10 chain 262689 chr7 159138663 + 126309419 126313054 MER61-int 3695 + 46 3687 15555 48 5 6 171 2 1 27 0 1 12 23 20 70 23 10 61 4 1 168 2 0 89 2 3 45 0 3 66 0 5 291 0 2 99 0 1 186 1 0 39 16 13 44 13 11 80 0 5 156 7 8 316 24 31 430 0 2 47 3 1 150 1 0 9 0 6 81 2 1 38 1 0 245 0 1 4 3 1 13 0 5 134 1 0 182 9 10 39 0 1 78 10 9 65 chain 2711 chr7 159138663 + 126326099 126326151 MER52D 1964 + 1161 1199 230089 27 14 0 11 chain 86457 chr7 159138663 + 126344152 126345204 MER11C 1089 + 0 1059 40984 313 0 4 244 11 12 19 0 1 83 12 16 45 0 1 38 4 0 283 chain 80193 chr7 159138663 + 126352621 126353666 L1PA8 5853 + 4813 5853 43509 194 0 5 58 20 17 104 0 2 46 2 0 323 2 1 45 2 0 79 14 13 40 2 1 19 2 0 93 chain 9911 chr7 159138663 + 126372989 126373176 MER30 238 + 38 238 161012 57 16 32 26 6 0 8 8 14 14 3 0 49 chain 12914 chr7 159138663 + 126379861 126380083 Tigger3a 397 + 158 366 148577 8 10 0 10 0 4 11 12 0 65 0 3 46 9 10 51 chain 70888 chr7 159138663 + 126446093 126447109 LTR12D 1347 - 0 1347 47967 247 0 97 75 13 15 137 0 24 41 1 59 19 1 110 153 3 4 26 8 44 14 20 17 38 19 26 201 chain 546371 chr7 159138663 + 126465776 126471889 L1PA3long 6157 - 0 6155 1898 627 0 1 215 0 4 298 12 14 108 1 0 346 0 2 349 0 3 920 0 4 103 0 7 2527 0 3 203 0 3 271 0 14 133 chain 27298 chr7 159138663 + 126488871 126489226 THE1B 368 - 1 368 95282 166 3 1 31 1 0 110 0 15 44 chain 17903 chr7 159138663 + 126494938 126495148 L1PB 1623 - 526 736 133091 210 chain 73125 chr7 159138663 + 126532199 126533009 L1PA3long 6157 - 0 817 46964 146 2 9 662 chain 14663 chr7 159138663 + 126538829 126539070 L1PA8 5853 - 0 237 142379 93 1 0 19 2 1 24 41 39 61 chain 22420 chr7 159138663 + 126562703 126563109 MSTA 426 + 0 426 118373 15 0 2 114 2 0 5 9 20 50 73 74 20 0 5 8 2 5 108 chain 70020 chr7 159138663 + 126567561 126568425 L1PA7 6471 + 5597 6458 48383 17 0 3 514 1 0 182 7 0 124 4 6 15 chain 13320 chr7 159138663 + 126596549 126596695 L1PA4 6152 - 9 155 147007 146 chain 156195 chr7 159138663 + 126603450 126605356 L1PA7 6471 + 4530 6452 23833 76 0 2 53 7 11 107 0 4 686 0 5 144 4 6 507 0 1 153 1 0 9 21 20 138 chain 20010 chr7 159138663 + 126614731 126615019 AluY 311 + 25 311 127110 22 5 6 72 21 19 132 2 1 34 chain 72299 chr7 159138663 + 126622455 126623325 HERVL-int 5654 - 0 884 47332 181 6 0 45 0 5 57 0 1 12 0 4 133 0 3 329 0 6 62 0 1 45 chain 59605 chr7 159138663 + 126623583 126624326 HERVL-int 5654 + 4928 5654 53049 299 1 0 170 14 1 69 6 0 150 0 2 28 0 1 6 chain 24278 chr7 159138663 + 126624326 126624775 MLT2A2 560 + 0 560 108791 139 91 94 69 2 111 45 0 5 39 12 6 52 chain 332303 chr7 159138663 + 126665920 126669855 L1PA6 6164 - 12 3970 12117 269 0 3 556 0 10 146 0 5 789 0 4 362 0 3 169 4 0 523 1 0 43 0 4 76 0 1 4 4 0 21 1 0 460 0 3 507 chain 113820 chr7 159138663 + 126682534 126683820 L1PA4 6152 + 4857 6143 33143 538 1 0 583 0 1 164 chain 23278 chr7 159138663 + 126686192 126686454 AluY 311 + 49 311 114301 262 chain 7419 chr7 159138663 + 126706759 126706984 L1MA5A 2387 - 81 275 174661 11 1 0 10 1 3 52 76 46 29 15 13 30 chain 4070 chr7 159138663 + 126717954 126718052 MER20 218 + 57 156 206317 16 39 40 43 chain 97854 chr7 159138663 + 126724883 126726024 L1PA6 6164 - 13 1164 37317 275 0 1 367 0 3 189 0 5 87 0 1 223 chain 8621 chr7 159138663 + 126760501 126760606 MER5A1 166 + 32 137 167631 105 chain 90080 chr7 159138663 + 126807934 126809041 L1PA7 6471 + 5330 6438 39622 93 0 1 197 0 3 185 7 10 62 0 1 120 6 0 204 0 3 102 1 5 7 8 0 115 chain 46321 chr7 159138663 + 126810240 126811020 L1PB1 5432 + 4663 5408 61754 42 0 2 10 7 3 374 22 20 23 9 7 12 20 14 25 1 0 25 2 1 15 1 0 45 2 1 14 2 0 6 16 6 11 9 8 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 4 chain 395672 chr7 159138663 + 126817621 126823081 L1PB1 5432 + 19 5413 10252 257 1 2 128 1 0 166 0 1 4 1 0 184 0 1 375 4 17 110 7 6 124 16 3 5 2 0 67 0 1 74 0 4 53 0 5 50 0 1 187 0 4 19 1 2 131 6 8 5 2 0 441 10 6 35 7 8 178 4 5 12 1 2 475 1 6 661 0 1 8 1 0 110 1 3 28 1 0 219 0 1 32 0 1 371 8 5 190 3 4 211 135 82 6 1 0 24 37 29 52 24 22 40 1 0 15 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 41729 chr7 159138663 + 126851102 126851642 MLT2A2 560 - 0 560 66990 6 0 4 47 0 1 4 1 0 81 1 12 372 0 5 28 chain 29299 chr7 159138663 + 126852464 126852770 AluYa5 310 - 4 310 87577 306 chain 27200 chr7 159138663 + 126898897 126899270 THE1C 375 + 0 375 95600 186 14 13 25 4 7 144 chain 93136 chr7 159138663 + 126917311 126918339 L1PA4 6152 + 5110 6138 38620 1028 chain 12656 chr7 159138663 + 126944743 126944905 Tigger3 1187 + 346 509 149624 20 1 2 141 chain 109039 chr7 159138663 + 126950403 126951603 L1PA3long 6157 + 4955 6157 34432 352 0 1 844 0 1 4 chain 162872 chr7 159138663 + 126951681 126954223 L1MA2 4263 + 1609 4110 22955 87 1 0 52 2 1 40 5 0 8 30 16 33 12 15 25 0 3 70 1 0 7 25 24 101 13 12 55 3 0 5 7 10 50 21 16 90 1 0 30 0 3 177 5 3 102 7 19 19 4 3 90 1 2 157 0 1 60 8 9 25 20 10 223 0 1 300 5 3 18 5 1 77 1 0 42 0 6 50 0 1 4 18 19 24 3 0 37 16 5 105 12 10 93 8 1 12 1 0 4 0 1 29 1 0 5 chain 8676 chr7 159138663 + 126955041 126955142 THE1C 375 - 269 371 167327 18 0 1 83 chain 64672 chr7 159138663 + 126955150 126956613 L1PREC2 3366 + 254 3249 50709 5 1 0 49 4 6 88 1 0 63 1 0 5 11 6 77 2 0 91 0 1 7 6 10 39 4 7 39 0 1671 36 6 6 18 1 0 144 0 3 36 4 14 36 1 0 36 23 8 44 9 8 43 1 0 4 3 0 9 33 25 13 28 21 23 43 26 35 6 4 34 245 156 18 5 0 23 2 0 8 chain 25912 chr7 159138663 + 127024278 127024587 AluYk4 311 - 3 311 100364 166 6 5 137 chain 127964 chr7 159138663 + 127036886 127038322 L1PA4 6152 - 11 1448 28577 29 2 0 735 1 3 547 0 1 122 chain 58861 chr7 159138663 + 127041190 127041887 L1PA7 6471 - 25 734 53483 485 0 10 130 0 2 82 chain 516007 chr7 159138663 + 127062701 127070797 L1PA7 6471 - 183 6469 5574 573 0 3 91 2 1 282 0 1 666 1 5 270 11 20 153 0 1 480 6 7 845 0 4 254 0 1 93 315 3 359 0 1 4 1 0 163 0 1 254 2 1 120 0 2 728 4 0 6 4 8 312 0 1 52 0 13 122 12 13 50 0 1 23 0 1 75 1543 3 220 chain 111508 chr7 159138663 + 127069036 127070572 LTR12C 1709 + 0 1709 33808 67 19 17 172 38 34 69 4 3 161 4 11 180 0 159 199 0 47 88 24 0 8 20 13 313 1 0 84 1 0 84 chain 518358 chr7 159138663 + 127091027 127097150 L1PA6 6164 + 4 6161 5342 233 26 28 255 0 15 34 1 0 17 11 1 210 1 18 39 4 0 756 0 1 597 5 7 672 0 1 102 0 1 82 2 1 97 1 0 18 0 1 33 9 7 305 0 9 303 0 2 1055 0 1 209 0 1 1046 chain 4342 chr7 159138663 + 127100367 127100419 L1M1 2793 + 1720 1772 202694 52 chain 21889 chr7 159138663 + 127103880 127104271 MSTC 436 + 0 436 120665 45 0 2 25 35 79 55 0 6 19 8 0 26 39 41 25 1 0 113 chain 28895 chr7 159138663 + 127104956 127105281 L1PA4 6152 + 5805 6131 89470 7 0 1 318 chain 17844 chr7 159138663 + 127110400 127110815 L1MA5A 2387 + 2019 2375 133259 14 1 0 5 6 0 32 2 0 34 8 13 38 2 0 10 16 17 33 3 0 15 27 0 65 1 0 7 48 28 10 1 0 22 2 0 13 chain 180424 chr7 159138663 + 127128777 127131144 L1PA5 6144 - 9 2063 20949 363 328 0 477 0 2 1138 0 13 61 chain 25688 chr7 159138663 + 127131150 127131433 L1PA5 6144 + 3751 4034 101339 283 chain 56968 chr7 159138663 + 127140952 127141837 L1PREC2 3366 + 2198 3043 54550 397 3 1 93 8 9 19 1 0 30 1 0 5 2 0 11 0 3 40 1 0 44 1 0 4 3 0 13 29 21 12 2 0 5 23 18 28 4 1 11 22 8 35 6 4 12 3 4 17 chain 20670 chr7 159138663 + 127152985 127153229 L1PA7 6471 + 6226 6470 125073 244 chain 5891 chr7 159138663 + 127153447 127153525 MER66B 489 + 251 330 186274 20 0 2 15 1 0 42 chain 105602 chr7 159138663 + 127160551 127161777 L1PA7 6471 - 495 1729 35349 117 0 3 231 0 4 456 0 1 169 18 18 235 chain 44216 chr7 159138663 + 127161779 127162300 L1PA7 6471 + 5951 6470 63925 26 1 0 333 1 0 160 chain 17023 chr7 159138663 + 127163397 127163632 L1PA16 3655 - 315 547 135529 46 12 10 83 1 0 93 chain 18458 chr7 159138663 + 127163682 127163936 L1PA16 3655 + 3342 3593 131624 140 0 6 7 6 0 83 3 0 15 chain 23338 chr7 159138663 + 127187193 127187564 THE1D 372 - 0 372 113991 35 2 1 102 0 6 32 6 9 55 5 9 51 4 0 6 1 5 20 12 1 40 chain 52077 chr7 159138663 + 127192555 127193145 L1PA5 6144 + 5542 6132 57577 590 chain 25150 chr7 159138663 + 127196677 127197040 THE1B 368 + 0 366 104000 169 1 0 29 9 16 14 3 2 10 1 0 66 7 6 54 chain 11679 chr7 159138663 + 127198346 127198517 THE1B 368 + 0 169 153567 66 20 18 85 chain 11101 chr7 159138663 + 127198573 127198712 THE1B 368 + 230 368 155801 10 1 0 128 chain 103450 chr7 159138663 + 127207511 127208628 L1PA3long 6157 + 5040 6157 35886 1117 chain 4827 chr7 159138663 + 127210424 127210601 L1MC4 1079 + 712 881 197045 44 105 97 28 chain 31613 chr7 159138663 + 127210710 127211165 LTR2 463 + 0 463 81461 57 1 4 75 6 5 147 8 9 13 4 10 60 0 1 30 1 0 28 1 0 24 chain 6343 chr7 159138663 + 127213771 127213852 Tigger3b 1229 + 771 853 182446 65 0 1 16 chain 3230 chr7 159138663 + 127278453 127278491 MIR 256 - 106 144 220414 38 chain 29319 chr7 159138663 + 127289039 127289538 LTR64 526 + 0 526 87439 79 0 2 5 19 16 151 5 0 3 20 0 23 1 0 9 0 38 83 30 48 49 2 0 20 chain 3621 chr7 159138663 + 127296756 127296796 MER11C 1089 + 0 40 213329 40 chain 89049 chr7 159138663 + 127320029 127321076 MER11C 1089 - 26 1089 39984 325 0 1 20 0 5 20 0 4 370 1 5 63 0 1 154 0 1 94 chain 23308 chr7 159138663 + 127325942 127326222 AluSp 311 - 9 290 114159 23 0 1 257 chain 7080 chr7 159138663 + 127414929 127415022 Tigger3 1187 + 915 1007 176889 63 1 0 29 chain 3544 chr7 159138663 + 127455275 127455314 MLT1C 463 + 66 105 214657 39 chain 32921 chr7 159138663 + 127477905 127478369 LTR10A 586 - 24 540 79335 117 3 18 137 0 2 60 1 28 59 1 0 26 6 14 26 12 13 16 chain 3265 chr7 159138663 + 127486812 127486846 MER57A1 433 - 75 109 219691 34 chain 32073 chr7 159138663 + 127529873 127530408 L1MA2 4263 - 149 670 80732 9 1 0 37 1 0 10 7 0 83 21 19 32 0 3 5 6 1 109 13 10 24 9 12 98 1 0 10 5 12 7 7 0 40 chain 272570 chr7 159138663 + 127603306 127606254 L1PA2 6032 - 0 2949 15044 156 4 5 2788 chain 69030 chr7 159138663 + 127606254 127607005 L1PA2 6032 + 2363 3114 48537 751 chain 3787 chr7 159138663 + 127619225 127619272 MER58B 340 - 147 194 210566 47 chain 25981 chr7 159138663 + 127737742 127738037 AluY 311 + 5 298 100086 286 2 0 7 chain 74078 chr7 159138663 + 127749559 127750519 MER11A 1151 - 0 1151 46473 81 0 2 79 5 6 16 1 0 42 0 9 28 0 81 117 5 6 107 0 1 37 0 1 94 0 1 54 0 1 94 4 0 66 1 0 74 0 99 55 chain 3977 chr7 159138663 + 127762809 127762889 L1MB3 1562 + 1442 1524 207720 27 17 15 21 0 3 5 0 1 10 chain 10311 chr7 159138663 + 127845019 127845146 MLT2B4 540 - 413 540 159085 127 chain 74947 chr7 159138663 + 127878819 127879790 MER11A 1151 + 0 1151 46039 85 0 91 54 2 1 63 4 0 146 4 5 93 0 1 145 5 6 112 0 81 33 0 9 10 1 2 30 1 0 16 0 1 167 chain 52777 chr7 159138663 + 127908747 127909552 L1MA2 4263 + 3066 4014 57147 90 16 22 100 7 9 209 0 1 66 4 3 17 9 4 57 10 96 69 4 1 47 2 0 29 1 61 11 1 0 6 2 1 38 0 1 10 chain 4010 chr7 159138663 + 127919931 127920170 L1P3 4156 - 17 252 114874 26 9 6 108 3 2 93 chain 67846 chr7 159138663 + 127920176 127921213 MER11A 1151 - 0 1151 49309 59 8 7 9 0 6 153 24 33 25 6 40 72 0 4 54 1 0 7 6 9 36 38 1 67 23 22 8 0 1 94 15 16 39 0 1 94 4 0 64 1 0 74 0 100 56 chain 3093 chr7 159138663 + 127920636 127920672 MER11A 1151 - 525 561 223055 36 chain 1644 chr7 159138663 + 127921213 127921311 L1P3 4156 - 252 351 114874 56 1 2 41 chain 6024 chr7 159138663 + 127931397 127932049 MER11A 1151 + 9 761 50068 62 1 100 59 1 0 64 5 1 84 1 3 61 0 1 94 0 1 145 5 6 38 0 1 32 chain 553893 chr7 159138663 + 127932066 127938188 L1PA3long 6157 + 0 6149 961 710 0 7 473 0 3 372 4 6 363 0 1 3371 0 1 490 1 10 263 1 2 68 0 3 6 chain 3271 chr7 159138663 + 127938194 127938548 MER11A 1151 + 761 1151 50068 47 0 1 17 0 33 31 0 1 29 0 1 14 1 2 30 1 0 16 0 1 61 1 0 106 chain 4563 chr7 159138663 + 127954314 127954364 MSTA 426 + 355 405 200070 50 chain 26213 chr7 159138663 + 127969153 127969451 AluSp 311 - 13 311 99150 298 chain 9567 chr7 159138663 + 127986530 127986652 HSMAR2 1300 - 57 179 162751 122 chain 83797 chr7 159138663 + 128007454 128011284 L1MA3 4352 + 575 4204 41992 38 0 8 152 2 0 20 0 3 56 1 0 6 13 5 11 1 0 51 11 14 88 0 2 49 4 3 29 1 0 45 1 4 41 78 10 11 0 3 7 3 0 13 1742 2160 162 2 1 61 6 1 130 627 95 208 0 4 27 33 13 6 3 0 27 0 1 51 1 0 4 0 1 8 chain 29071 chr7 159138663 + 128012521 128012831 AluYa5 310 - 3 310 88678 214 3 0 93 chain 12572 chr7 159138663 + 128054640 128054802 HSMAR2 1300 - 1134 1297 149958 104 0 2 21 1 0 36 chain 6052 chr7 159138663 + 128055618 128055789 MER20 218 + 36 211 184792 19 48 43 48 30 39 26 chain 3844 chr7 159138663 + 128078216 128078285 MER51D 577 + 491 558 209735 7 4 0 11 1 4 21 1 0 24 chain 121827 chr7 159138663 + 128102945 128104338 SVA_B 1603 + 44 1603 30436 22 0 5 626 0 40 48 0 3 58 0 123 45 2 0 386 1 0 197 2 0 6 chain 22541 chr7 159138663 + 128123797 128124056 AluSp 311 - 31 290 117841 259 chain 28588 chr7 159138663 + 128129679 128129981 AluYa5 310 - 8 310 90792 302 chain 16607 chr7 159138663 + 128129981 128130275 Tigger1 2417 - 329 621 136649 90 0 4 34 12 13 36 32 26 6 2 0 20 4 5 58 chain 25111 chr7 159138663 + 128138227 128138559 L1PA7 6471 + 6141 6469 104223 167 8 7 144 3 0 10 chain 23276 chr7 159138663 + 128160791 128161083 AluSg7 307 - 7 296 114318 37 1 0 121 7 4 6 0 1 120 chain 674 chr7 159138663 + 128161093 128161145 MER41B 635 + 495 547 195261 52 chain 23205 chr7 159138663 + 128207650 128207926 AluSg7 307 - 32 307 114664 262 1 0 13 chain 5138 chr7 159138663 + 128211986 128212051 L1MB3 1562 - 1367 1434 193684 47 0 2 18 chain 142770 chr7 159138663 + 128216063 128217799 SVA_D 2077 - 1 2076 25689 8 3 0 657 20 18 4 0 1 41 0 1 138 0 78 92 0 2 22 78 0 62 0 36 8 2 0 109 0 309 468 3 0 21 chain 4527 chr7 159138663 + 128217048 128217126 SVA_D 2077 - 758 836 82439 78 chain 9167 chr7 159138663 + 128241044 128241147 Harlequin-int 5206 + 485 588 164726 103 chain 49111 chr7 159138663 + 128256731 128257291 L1PA4 6152 - 12 571 59662 248 1 0 311 chain 21471 chr7 159138663 + 128264362 128264641 AluSp 311 + 4 286 122248 49 12 14 43 0 1 175 chain 87284 chr7 159138663 + 128270179 128271241 MER11B 1079 - 0 1079 40655 308 8 2 385 0 1 50 0 17 86 0 5 225 chain 118852 chr7 159138663 + 128301682 128303223 THE1B-int 1605 + 0 1600 31473 15 0 2 7 9 10 398 25 50 31 3 8 206 13 14 87 8 2 215 0 30 9 0 1 515 chain 24993 chr7 159138663 + 128303228 128303583 THE1B 368 + 0 368 104837 44 5 20 16 1 2 90 1 0 20 2 0 64 0 1 36 1 0 13 1 0 4 0 1 57 chain 29043 chr7 159138663 + 128309224 128309528 AluYa5 310 - 6 310 88789 304 chain 136727 chr7 159138663 + 128328839 128330460 SVA_C 1631 + 18 1616 26689 619 0 8 75 40 0 135 7 10 5 2 0 7 1 2 18 12 17 10 0 1 42 0 1 34 1 0 16 1 0 495 0 2 101 chain 22732 chr7 159138663 + 128331482 128331851 MER41B 635 + 0 635 116912 125 1 2 25 6 33 92 13 246 4 1 0 22 0 5 6 25 26 49 chain 9470 chr7 159138663 + 128337505 128337612 5S 121 + 14 121 163214 107 chain 4720 chr7 159138663 + 128337749 128337798 5S 121 + 7 56 198274 49 chain 9464 chr7 159138663 + 128344669 128344871 MER1B 344 - 136 298 163253 95 72 33 22 1 0 12 chain 2988 chr7 159138663 + 128350268 128350302 U7 62 - 28 62 225269 34 chain 24781 chr7 159138663 + 128390007 128390299 AluY 311 + 9 307 105984 124 1 0 138 0 7 29 chain 23620 chr7 159138663 + 128408622 128408922 AluSp 311 + 12 303 112470 177 25 16 98 chain 6948 chr7 159138663 + 128423503 128423575 tRNA-Pro-CCY 72 + 0 72 177839 72 chain 38943 chr7 159138663 + 128429893 128430432 MER41A 554 + 0 549 70812 229 11 9 68 23 23 48 0 10 43 0 1 47 0 1 70 chain 28853 chr7 159138663 + 128436793 128437094 AluYa5 310 - 9 310 89658 301 chain 17720 chr7 159138663 + 128463837 128464089 MER1B 344 - 0 251 133647 59 15 19 50 4 0 65 1 0 58 chain 43197 chr7 159138663 + 128535570 128536106 MER41A 554 + 0 554 65176 93 0 1 81 0 12 128 11 11 142 0 5 81 chain 25447 chr7 159138663 + 128536661 128536968 AluSc 308 + 0 305 102466 20 3 1 284 chain 120723 chr7 159138663 + 128538494 128540371 PABL_A-int 1935 + 99 1915 30785 8 2 0 12 1 0 16 14 4 187 22 20 63 5 0 4 6 0 13 0 2 97 11 1 23 1 0 47 2 0 5 10 13 220 0 3 151 1 0 45 1 0 41 1 0 12 8 5 25 0 5 18 12 26 69 0 2 55 0 1 176 32 6 4 0 1 35 3 1 7 1 0 84 1 0 81 5 0 10 1 5 21 0 1 33 15 14 65 2 1 18 1 0 15 42 28 17 chain 47259 chr7 159138663 + 128540936 128541799 MER41A 554 + 0 554 60993 50 1 0 43 0 1 359 309 0 101 chain 5892 chr7 159138663 + 128546831 128546911 MADE1 96 - 0 96 186254 43 5 21 32 chain 5466 chr7 159138663 + 128558243 128558309 MER53 195 + 0 66 190341 66 chain 12446 chr7 159138663 + 128567362 128567565 MER1B 344 - 8 201 150474 51 26 15 63 7 8 56 chain 3864 chr7 159138663 + 128596622 128596667 Tigger4a 237 - 189 234 209393 45 chain 28993 chr7 159138663 + 128602137 128602445 AluYb8 318 + 0 308 89021 308 chain 11225 chr7 159138663 + 128641448 128641644 MER2 342 + 143 318 155325 135 44 23 17 chain 26201 chr7 159138663 + 128675046 128675331 AluYk4 311 + 0 285 99197 285 chain 6913 chr7 159138663 + 128679036 128679170 L1MB7 1623 + 1049 1187 178087 43 24 27 23 6 7 38 chain 5565 chr7 159138663 + 128697879 128698010 L1MB7 1623 + 910 1041 189429 26 28 30 21 8 7 43 1 0 4 chain 40469 chr7 159138663 + 128707219 128707694 LTR15 485 - 7 485 68640 105 0 2 295 0 1 75 chain 19753 chr7 159138663 + 128721154 128721378 AluY 311 + 82 305 127948 41 1 0 182 chain 9141 chr7 159138663 + 128737604 128737759 FAM 185 + 20 173 164851 41 1 0 7 36 35 70 chain 2561 chr7 159138663 + 128738425 128738598 MER20B 722 - 516 695 232361 17 5 6 19 115 120 17 chain 15769 chr7 159138663 + 128756618 128756833 L1PA8 5853 + 5637 5849 139057 42 1 0 7 5 4 50 2 1 19 1 0 76 0 1 12 chain 44763 chr7 159138663 + 128758857 128759623 L1MA5A 2387 - 91 817 63319 58 2 0 7 26 1 13 8 5 29 1 0 28 2 0 44 33 32 9 2 0 8 6 5 20 5 4 202 0 1 64 4 5 27 8 7 10 0 1 76 1 0 16 5 1 48 0 1 4 chain 28962 chr7 159138663 + 128761599 128761953 THE1B 368 - 0 368 89167 194 3 2 113 0 15 44 chain 9227 chr7 159138663 + 128804689 128804799 HY1 111 + 0 110 164411 110 chain 42984 chr7 159138663 + 128810156 128810675 MER41A 554 - 29 554 65434 52 0 5 37 0 1 430 chain 24603 chr7 159138663 + 128839980 128840272 AluY 311 + 0 293 106978 23 0 1 7 0 3 99 3 0 160 chain 125875 chr7 159138663 + 128855584 128857118 SVA_A 1864 + 10 1864 29137 5 1 0 264 0 4 251 0 3 39 5 4 33 3 0 40 2 0 20 0 37 17 2 0 36 1 0 77 2 0 29 9 301 35 3 0 40 2 0 603 0 1 15 chain 24611 chr7 159138663 + 128868902 128869195 AluSp 311 - 6 299 106931 293 chain 22628 chr7 159138663 + 128879782 128880074 AluSp 311 + 0 297 117432 134 9 17 118 8 5 23 chain 27949 chr7 159138663 + 128889263 128889556 AluYb8 318 - 16 309 93169 293 chain 26366 chr7 159138663 + 128913162 128913468 AluSp 311 - 5 311 98549 306 chain 128597 chr7 159138663 + 128940967 128942845 L1MA2 4263 - 604 2484 28418 34 0 3 36 7 3 13 1 0 180 0 1 19 1 0 125 0 1 77 1 0 4 0 1 290 43 28 66 23 18 84 53 51 41 0 15 126 0 1 147 5 6 6 0 2 38 1 0 219 0 1 33 1 8 19 1 0 68 18 18 98 chain 7063 chr7 159138663 + 128945332 128945443 L1MA2 4263 - 4127 4244 176999 13 10 9 45 0 4 10 0 3 33 chain 5114 chr7 159138663 + 128997885 128997947 L1MB3 1562 + 1201 1263 193920 62 chain 23844 chr7 159138663 + 129006352 129006633 AluSp 311 + 12 298 111218 79 0 3 18 0 2 184 chain 32111 chr7 159138663 + 129006638 129007048 MER4A1 472 - 38 472 80670 178 4 25 169 0 1 45 1 3 13 chain 3450 chr7 159138663 + 129045476 129045515 U7 62 + 1 40 216200 39 chain 13051 chr7 159138663 + 129051219 129052678 L1MB8 1703 - 140 756 148025 39 1226 383 52 22 23 30 1 0 89 chain 32772 chr7 159138663 + 129084041 129084486 MLT2A1 477 - 0 477 79576 20 1 0 22 10 0 9 3 41 211 1 5 26 0 1 142 chain 464393 chr7 159138663 + 129084486 129090075 HERVL-int 5654 - 0 5654 8241 100 43 28 116 0 5 61 0 20 444 1 2 105 0 6 223 0 10 446 0 1 162 1 0 4 0 1 308 1 4 554 11 19 78 0 4 82 7 8 776 1 10 336 0 4 75 0 4 511 0 4 359 5 3 538 0 2 241 chain 29082 chr7 159138663 + 129090766 129091079 AluYa5 310 - 0 310 88627 217 3 0 93 chain 17287 chr7 159138663 + 129115183 129115386 SVA_D 2077 - 4 203 134817 6 5 0 116 0 1 76 chain 137226 chr7 159138663 + 129115404 129117045 SVA_C 1631 - 0 1613 26600 595 0 45 111 80 1 9 2 0 5 12 15 233 0 2 561 0 2 27 0 1 6 chain 3260 chr7 159138663 + 129116143 129116190 SVA_C 1631 - 786 833 133304 47 chain 17108 chr7 159138663 + 129130444 129130688 MER2 342 + 89 336 135287 15 4 5 122 0 1 87 4 5 12 chain 8284 chr7 159138663 + 129156349 129156458 MSTA 426 - 36 147 169491 64 0 3 39 1 0 5 chain 30390 chr7 159138663 + 129173770 129174522 LTR7 482 - 17 482 83698 78 2 0 26 1 0 55 0 1 10 11 42 12 0 1 15 0 1 109 332 14 101 chain 5458 chr7 159138663 + 129207733 129207802 MSTD 398 - 0 69 190434 69 chain 26555 chr7 159138663 + 129217256 129217556 AluYk4 311 - 12 311 97828 181 1 0 118 chain 4737 chr7 159138663 + 129218670 129218727 LTR2 463 + 406 463 198056 57 chain 241398 chr7 159138663 + 129219574 129222472 Harlequin-int 5206 + 150 3039 16700 144 3 0 191 2 0 103 0 1 93 1 0 626 0 6 387 0 2 241 2 0 543 10 0 552 chain 8063 chr7 159138663 + 129231189 129231312 L1MCa 1829 - 731 861 170675 51 0 6 23 10 11 39 chain 16192 chr7 159138663 + 129277591 129277825 MER30 238 + 0 238 137776 107 16 0 11 3 20 58 0 3 39 chain 5506 chr7 159138663 + 129298702 129298842 MER2 342 + 135 278 189976 6 0 5 43 57 55 34 chain 27431 chr7 159138663 + 129299758 129300122 THE1B 368 - 0 368 94876 30 0 1 18 0 10 13 1 0 96 4 0 26 1 0 126 0 1 31 3 1 15 chain 120930 chr7 159138663 + 129300122 129301694 THE1B-int 1605 - 0 1605 30717 147 0 1 108 5 6 141 1 0 183 11 6 172 4 3 141 12 21 225 2 29 405 0 2 15 chain 115924 chr7 159138663 + 129302607 129303956 SVA_A 1864 - 12 1836 32486 310 0 1 299 4 406 34 3 0 129 0 75 570 chain 4400 chr7 159138663 + 129313613 129313668 L1PA8 5853 + 5789 5853 201927 24 0 9 31 chain 14840 chr7 159138663 + 129333272 129333494 MER30 238 + 0 236 141810 106 4 0 10 24 42 78 chain 21786 chr7 159138663 + 129355590 129355864 AluSp 311 + 28 294 121076 121 5 4 129 7 0 12 chain 25115 chr7 159138663 + 129361952 129362249 AluSp 311 + 0 300 104199 91 0 3 206 chain 21496 chr7 159138663 + 129372454 129372706 AluSp 311 - 24 276 122158 252 chain 23462 chr7 159138663 + 129424053 129424341 AluSp 311 + 0 284 113305 85 4 0 199 chain 25304 chr7 159138663 + 129427781 129428077 AluY 311 + 10 306 103201 99 1 0 23 0 1 173 chain 24501 chr7 159138663 + 129448910 129449199 AluY 311 + 21 311 107538 111 0 1 178 chain 4628 chr7 159138663 + 129455731 129455791 L1MB7 1623 - 1546 1603 199320 7 3 0 50 chain 44989 chr7 159138663 + 129507077 129507552 L1HS 6032 + 5557 6032 63065 475 chain 28132 chr7 159138663 + 129508160 129508456 AluYb8 318 + 22 318 92535 296 chain 16287 chr7 159138663 + 129527520 129527751 AluSp 311 + 63 308 137511 110 0 32 25 16 0 73 2 0 5 chain 6701 chr7 159138663 + 129540463 129540536 L1PA2 6032 - 4 77 179677 73 chain 12915 chr7 159138663 + 129552353 129552555 Tigger4b 360 - 132 360 148573 89 15 38 21 11 14 66 chain 24858 chr7 159138663 + 129576895 129577195 AluY 311 + 8 309 105577 109 0 1 191 chain 22885 chr7 159138663 + 129585584 129585874 AluSp 311 - 16 300 116165 99 5 0 76 1 0 109 chain 6134 chr7 159138663 + 129593849 129593957 MER5A1 166 + 36 146 184142 32 16 19 25 1 0 34 chain 8397 chr7 159138663 + 129594533 129594632 HY3 101 + 1 100 168867 99 chain 5718 chr7 159138663 + 129601830 129601916 HY3 101 - 1 101 187944 53 5 16 9 0 3 19 chain 24994 chr7 159138663 + 129616237 129616536 AluY 311 + 10 309 104824 116 1 0 154 0 1 28 chain 10288 chr7 159138663 + 129624752 129624887 L1MA5 2750 + 1929 2068 159190 53 1 5 81 chain 24002 chr7 159138663 + 129635014 129635309 AluY 311 + 11 300 110319 36 4 0 17 2 0 236 chain 25499 chr7 159138663 + 129659649 129659954 AluSc5 308 - 3 308 102224 33 0 1 58 2 1 212 chain 7269 chr7 159138663 + 129667116 129667204 5S 121 + 0 88 175656 88 chain 7714 chr7 159138663 + 129698404 129698545 MER2 342 + 133 278 172834 76 19 13 23 10 20 13 chain 3253 chr7 159138663 + 129750050 129750086 L1MC4 1079 - 439 475 219938 36 chain 3779 chr7 159138663 + 129760234 129760279 Tigger4a 237 - 8 53 210684 45 chain 23940 chr7 159138663 + 129789995 129790286 AluY 311 + 0 286 110683 125 6 1 160 chain 22155 chr7 159138663 + 129790935 129791225 AluYc3 301 - 7 290 119574 5 3 0 23 4 0 77 0 1 73 12 11 93 chain 3154 chr7 159138663 + 129820124 129820189 L1MB8 1703 + 874 940 221861 20 17 18 28 chain 24981 chr7 159138663 + 129826806 129827117 AluSz 310 + 6 307 104903 290 10 0 11 chain 23128 chr7 159138663 + 129833104 129833396 AluSp 311 + 1 299 115004 73 1 8 121 1 0 96 chain 6573 chr7 159138663 + 129856957 129857187 MER31B 477 - 10 259 180676 29 60 79 33 0 1 8 62 61 38 chain 20828 chr7 159138663 + 129862523 129862866 MER1B 344 + 29 344 124511 80 6 0 107 26 0 20 0 8 17 29 25 58 chain 32335 chr7 159138663 + 129864281 129865111 LTR8 732 + 31 577 80293 11 6 0 61 0 7 46 320 6 139 20 47 95 0 1 4 1 0 56 0 5 18 32 29 21 chain 18896 chr7 159138663 + 129865564 129865811 AluY 311 + 58 299 130378 74 0 1 160 7 0 6 chain 117977 chr7 159138663 + 129869680 129871068 LTR12C 1709 + 0 1708 31814 792 9 325 107 0 4 480 chain 20193 chr7 159138663 + 129871068 129872396 MSTA 426 - 0 417 126549 26 1 0 83 5 25 36 31 29 71 1 42 6 13 0 19 956 0 80 chain 3304 chr7 159138663 + 129873994 129874089 MER63A 208 - 1 99 218907 35 10 14 11 26 25 13 chain 34712 chr7 159138663 + 129874956 129875710 MLT2A1 477 + 0 477 76606 17 0 4 147 5 2 191 312 0 24 3 37 55 chain 128547 chr7 159138663 + 129883126 129884813 L1PA13 3608 - 806 2595 28435 39 3 1 40 0 1 114 1 0 163 0 8 10 0 1 118 0 1 279 32 121 264 0 1 247 1 0 77 15 19 190 0 1 94 chain 48989 chr7 159138663 + 129884813 129885489 L1PA13 3608 + 2821 3488 59645 230 1 0 45 0 1 32 1 0 30 1 0 108 8 6 60 2 1 22 1 0 30 1 0 10 2 0 47 2 0 5 6 9 11 1 0 20 chain 530847 chr7 159138663 + 129888557 129895019 L1PA6 6164 - 7 6164 4105 146 0 1 212 315 0 1698 0 1 147 0 1 248 1 0 128 0 1 51 1 0 200 0 3 44 0 2 84 0 1 4 0 1 850 0 1 725 1 0 333 0 1 707 1 0 457 0 1 109 chain 71920 chr7 159138663 + 129898125 129899306 MER61-int 3695 + 29 1601 47514 5 2 0 10 3 2 15 24 25 109 12 303 44 46 45 36 1 3 12 0 96 22 8 7 92 2 0 62 0 1 21 10 12 179 0 6 88 0 1 30 1 2 87 3 2 72 16 14 43 1 5 91 6 0 6 0 2 22 chain 27215 chr7 159138663 + 129924507 129924812 AluYf4 310 + 0 310 95544 172 0 5 133 chain 29311 chr7 159138663 + 129925544 129925856 AluYb8 318 + 0 312 87509 312 chain 3613 chr7 159138663 + 129933567 129933611 tRNA-Cys-TGY 72 - 28 72 213447 44 chain 12478 chr7 159138663 + 129952302 129952453 THE1B 368 + 0 166 150349 44 0 15 107 chain 20739 chr7 159138663 + 129961386 129961738 THE1B 368 - 12 368 124821 44 7 6 66 8 16 10 41 37 60 10 11 106 chain 6304 chr7 159138663 + 129972323 129972391 L1PA5 6144 - 8 76 182758 68 chain 2793 chr7 159138663 + 129976998 129977028 MER58B 340 + 66 96 228857 30 chain 3589 chr7 159138663 + 129984441 129984480 MER3 215 + 51 90 213830 39 chain 24571 chr7 159138663 + 130016322 130016660 THE1B 368 + 0 348 107130 44 18 33 91 2 0 32 2 0 92 2 1 55 chain 13289 chr7 159138663 + 130046662 130046817 L1PA5 6144 + 5986 6141 147133 155 chain 4369 chr7 159138663 + 130062706 130062777 L1MB7 1623 + 941 1011 202328 43 11 10 17 chain 23604 chr7 159138663 + 130083220 130083512 AluY 311 + 2 301 112554 45 1 7 78 7 8 161 chain 13441 chr7 159138663 + 130120285 130120502 L1MB8 1703 - 115 339 146547 98 0 11 29 29 27 38 2 0 21 chain 55289 chr7 159138663 + 130120652 130121245 L1HS 6032 + 5439 6032 55526 593 chain 131422 chr7 159138663 + 130254545 130256505 L1PB1 5432 + 3534 5422 27771 76 1 3 115 1 4 82 0 5 58 7 8 68 19 15 24 1 0 201 5 6 154 14 19 256 3 0 86 1 0 34 1 0 62 1 4 113 1 0 14 0 2 155 57 10 6 5 0 20 1 0 12 1 0 10 19 13 51 3 2 15 1 0 44 1 0 15 3 0 7 15 6 17 25 20 24 1 0 22 1 0 12 1 0 18 chain 88726 chr7 159138663 + 130258632 130261413 L1PB1 5432 + 115 2842 10578 16 0 2 171 7 8 90 5 0 4 2 0 187 11 9 151 0 2 385 1 2 216 2 0 37 1 0 6 16 1 129 6 10 41 37 44 350 0 2 247 1 2 39 0 3 71 43 5 93 7 1 54 11 0 84 0 5 260 chain 553602 chr7 159138663 + 130261431 130267780 L1PA2 6032 + 3 6032 994 207 0 1 107 332 4 1942 0 4 2274 0 1 869 0 1 455 0 1 163 chain 83622 chr7 159138663 + 130268105 130270726 L1PB1 5432 + 2842 5424 10578 12 3 4 7 6 0 235 1 3 341 6 12 21 7 3 249 1 3 189 9 0 77 0 2 458 1 0 76 2 1 93 0 1 175 1 0 90 1 0 80 0 1 34 0 1 93 7 6 5 1 0 24 2 0 9 1 0 7 9 5 8 2 0 52 1 0 62 1 0 15 1 0 4 45 33 13 2 0 24 1 0 21 4 3 10 1 0 16 1 0 4 chain 113359 chr7 159138663 + 130271813 130273076 L1PA4 6152 + 4891 6152 33262 410 2 0 851 chain 162003 chr7 159138663 + 130274486 130277290 SVA_D 2077 + 1 2072 23065 18 5 0 523 0 80 102 0 3 34 3 0 157 0 36 33 0 51 48 1 0 52 942 0 219 0 49 312 2 1 353 chain 3045 chr7 159138663 + 130275462 130275497 SVA_D 2077 + 1265 1300 149795 35 chain 570 chr7 159138663 + 130275497 130275531 SVA_D 2077 + 1174 1208 132328 34 chain 32406 chr7 159138663 + 130275566 130276341 SVA_F 1814 + 664 1193 80193 41 6 46 25 1 0 19 0 1 4 146 50 5 1 0 29 1 2 62 204 14 231 chain 10843 chr7 159138663 + 130275662 130275808 SVA_F 1814 + 993 1139 92473 146 chain 7055 chr7 159138663 + 130275915 130276010 SVA_F 1814 + 1197 1291 92473 77 1 0 17 chain 893 chr7 159138663 + 130276041 130276069 SVA_F 1814 + 1196 1224 181711 28 chain 11720 chr7 159138663 + 130280521 130280689 MER41E 591 + 403 575 153382 24 0 5 17 12 11 115 chain 64120 chr7 159138663 + 130285939 130286707 L1PA7 6471 + 5704 6466 50956 152 0 3 60 0 1 307 2 0 82 1 2 116 9 0 39 chain 21009 chr7 159138663 + 130288728 130289076 Tigger2a 444 - 66 444 123882 21 4 7 14 44 52 59 0 3 31 0 3 54 0 1 15 13 25 93 chain 25251 chr7 159138663 + 130294083 130294433 THE1B 368 + 0 364 103474 44 5 20 67 7 11 30 2 1 19 4 0 172 chain 29464 chr7 159138663 + 130309683 130310091 L1PB2 3958 - 145 541 86779 38 1 0 22 2 0 72 1 0 64 1 0 77 1 0 88 4 0 14 3 1 20 chain 11912 chr7 159138663 + 130311112 130311560 LTR19A 502 + 103 502 152545 50 11 0 20 0 37 15 214 141 64 39 37 35 chain 25072 chr7 159138663 + 130312080 130312512 MER83 447 + 0 433 104447 151 1 0 90 5 7 65 49 52 15 35 32 21 chain 542590 chr7 159138663 + 130317613 130324057 L1PA7 6471 - 3 6471 2408 7 4 0 762 0 18 64 8 15 653 1 0 226 0 2 43 0 4 170 0 5 11 0 1 865 1 3 40 0 5 412 0 1 298 1 0 92 9 0 125 14 5 14 0 1 1027 0 1 202 0 3 786 2 0 204 1 0 107 0 1 295 chain 16784 chr7 159138663 + 130331463 130331777 THE1D 372 + 0 333 136151 19 5 4 38 4 14 60 0 4 26 62 69 42 1 0 57 chain 30071 chr7 159138663 + 130336337 130336655 AluYb8 318 - 0 318 84600 318 chain 15590 chr7 159138663 + 130373365 130373580 MER30 238 - 3 238 139612 36 0 3 62 10 27 107 chain 131408 chr7 159138663 + 130386825 130388230 L1HS 6032 - 0 1405 27774 1405 chain 43184 chr7 159138663 + 130388234 130388693 L1HS 6032 + 4110 4569 65192 459 chain 219686 chr7 159138663 + 130449226 130451981 L1PA7 6471 - 10 2795 17904 4 1 0 147 1 2 296 0 2 392 4 7 229 0 1 98 3 11 60 2 1 264 2 0 276 0 8 91 0 1 50 0 2 108 0 1 62 0 1 63 1 4 72 0 2 266 0 1 263 chain 515130 chr7 159138663 + 130481078 130487742 L1PA7 6471 - 15 6471 5655 838 1 4 111 1 0 107 10 6 36 1 0 683 0 8 149 40 15 239 1 2 46 0 2 38 1 0 619 0 4 52 16 15 583 6 10 256 7 8 104 0 2 343 219 0 146 0 1 67 4 9 75 0 2 108 1 0 137 0 1 391 0 4 87 0 1 245 4 0 6 4 8 65 4 5 119 17 19 199 0 24 54 22 0 302 0 1 100 chain 79637 chr7 159138663 + 130497455 130498417 L1PA7 6471 - 18 981 43762 122 1 0 7 16 17 345 0 2 339 1 0 131 chain 3362 chr7 159138663 + 130521208 130521245 MLT1I 406 - 54 91 217838 37 chain 16092 chr7 159138663 + 130535062 130535287 MER30 238 - 0 238 138081 39 3 0 71 4 21 62 1 0 45 chain 120321 chr7 159138663 + 130545131 130546674 THE1A-int 1579 + 0 1571 30932 150 1 13 163 2 1 66 2 1 22 2 1 77 5 4 92 3 1 90 12 28 120 11 16 470 1 2 254 chain 28682 chr7 159138663 + 130546682 130547035 THE1A 353 + 0 353 90398 109 2 1 88 1 0 120 0 2 33 chain 8324 chr7 159138663 + 130559601 130559720 MER85 139 + 5 138 169256 44 3 7 33 1 11 38 chain 36109 chr7 159138663 + 130576693 130577078 L1HS 6032 + 5644 6029 74752 385 chain 15039 chr7 159138663 + 130591912 130592115 L1PA7 6471 + 6258 6461 141206 49 18 18 136 chain 3289 chr7 159138663 + 130619335 130619371 MLT2D 439 - 0 36 219198 36 chain 40236 chr7 159138663 + 130657361 130657827 L1PA5 6144 - 0 472 68968 138 0 7 113 1 0 214 chain 39239 chr7 159138663 + 130690581 130691021 L1PA3long 6157 + 5713 6157 70402 300 0 2 75 0 2 65 chain 29176 chr7 159138663 + 130720862 130721177 AluYa5 310 - 0 310 88172 178 5 0 132 chain 9310 chr7 159138663 + 130743992 130744287 LTR12C 1709 + 773 1196 164014 59 0 81 47 151 73 26 0 125 12 chain 31557 chr7 159138663 + 130756715 130757165 MER41B 635 + 97 549 81550 29 0 1 324 31 30 27 0 1 16 5 6 18 chain 22021 chr7 159138663 + 130769084 130769441 THE1C 375 + 0 360 120136 72 63 67 119 1 0 102 chain 14269 chr7 159138663 + 130781903 130782114 MER30 238 + 0 238 143651 13 8 26 69 4 16 74 3 0 40 chain 3973 chr7 159138663 + 130788045 130788106 MER3 215 - 83 153 207786 23 4 13 34 chain 11053 chr7 159138663 + 130802724 130802988 MSTB 430 + 0 285 155997 83 1 2 28 82 100 30 16 18 24 chain 25908 chr7 159138663 + 130805353 130805690 MSTA-int 1630 - 1274 1611 100391 8 0 3 5 3 0 321 chain 18262 chr7 159138663 + 130806197 130806426 AluY 311 + 82 311 132170 50 0 1 74 5 4 100 chain 27144 chr7 159138663 + 130807498 130807808 AluYk4 311 + 0 308 95783 132 2 0 176 chain 5484 chr7 159138663 + 130846150 130846216 Tigger4b 360 + 0 66 190186 66 chain 5789 chr7 159138663 + 130873264 130873483 MLT1H 522 - 240 466 187264 34 136 143 49 chain 15475 chr7 159138663 + 130913922 130914106 L1PA7 6471 - 1 184 139976 12 1 0 171 chain 3522 chr7 159138663 + 130933239 130933286 MIRb 242 - 29 75 215026 25 1 0 21 chain 114631 chr7 159138663 + 130944594 130946614 L1PA15 4387 + 2654 4356 32912 148 19 11 24 0 1 8 299 28 98 0 7 51 0 4 95 0 14 23 2 3 88 1 28 23 71 0 50 4 8 446 2 0 21 4 0 58 3 1 37 4 3 83 0 2 87 1 0 26 1 0 55 1 0 17 4 0 13 4 3 19 3 0 30 6 3 44 3 1 11 6 3 27 chain 27273 chr7 159138663 + 130957338 130957692 THE1A 353 - 0 353 95362 155 1 0 88 2 1 81 4 5 23 chain 10783 chr7 159138663 + 130959806 130960096 MLT1A0 366 - 0 305 157063 93 146 161 51 chain 21547 chr7 159138663 + 130972458 130972829 THE1D 372 + 0 357 121978 46 10 1 10 20 21 88 26 26 137 20 14 14 chain 24564 chr7 159138663 + 130982760 130983043 AluYc 301 + 0 285 107172 120 0 2 163 chain 40114 chr7 159138663 + 130984291 130984799 MER75 514 - 0 514 69160 23 12 15 194 0 3 279 chain 459652 chr7 159138663 + 131000484 131006344 L1PA8 5853 + 50 5853 8414 22 2 0 10 63 26 118 31 15 61 18 6 90 24 0 240 0 3 6 3 0 25 1 0 608 0 3 113 0 1 4 3 2 503 0 2 79 0 15 16 13 0 71 0 4 36 13 1 351 0 4 133 0 2 281 5 6 22 0 4 30 0 5 627 0 2 244 1 0 104 11 11 48 0 14 39 0 1 135 0 2 811 1 0 3 2 0 42 15 16 171 1 0 174 0 2 107 1 4 39 1 0 46 2 0 48 4 7 33 1 2 40 2 1 112 chain 15047 chr7 159138663 + 131007112 131007316 THE1D 372 - 0 207 141185 181 8 11 15 chain 30012 chr7 159138663 + 131007316 131007628 AluYb8 318 - 6 318 84768 312 chain 20510 chr7 159138663 + 131050124 131050526 L1PA14 3548 - 63 443 125598 20 1 0 10 6 0 41 1 0 16 1 0 11 1 0 8 15 17 19 18 13 103 1 0 6 5 4 75 6 5 6 2 0 11 7 3 12 chain 15244 chr7 159138663 + 131103162 131103379 MER30 238 - 0 238 140654 80 0 6 14 3 0 8 4 22 108 chain 9323 chr7 159138663 + 131104841 131104954 L1PA4 6152 + 6034 6152 163934 107 0 5 6 chain 16608 chr7 159138663 + 131121840 131122040 L1PA6 6164 - 5 204 136640 13 1 0 186 chain 5971 chr7 159138663 + 131202811 131202901 MLT1C 463 - 298 383 185501 19 0 2 6 1 0 14 6 0 44 chain 3837 chr7 159138663 + 131249868 131249913 MSTA 426 - 18 63 209822 45 chain 10376 chr7 159138663 + 131274866 131274992 L1PB4 2604 + 2426 2552 158800 126 chain 23162 chr7 159138663 + 131275208 131275506 AluSp 311 + 10 303 114844 30 0 1 83 7 0 157 0 1 21 chain 24375 chr7 159138663 + 131278619 131278905 AluSp 311 - 13 300 108221 210 0 1 76 chain 20794 chr7 159138663 + 131300373 131300688 AluSp 311 - 18 302 124625 56 27 28 35 33 1 164 chain 6496 chr7 159138663 + 131332003 131332207 L1MB3 1562 - 286 503 181282 70 109 122 25 chain 35627 chr7 159138663 + 131346330 131347603 MER4A1 472 - 0 472 75373 231 9 10 54 801 0 168 1 0 9 chain 77382 chr7 159138663 + 131361463 131362733 L1PA7 6471 - 1 945 44788 11 2 0 51 21 4 45 0 5 260 0 1 209 312 0 270 1 0 88 chain 22715 chr7 159138663 + 131397750 131398030 AluSq2 311 + 11 293 117012 122 0 1 10 0 1 148 chain 3357 chr7 159138663 + 131440846 131440883 SVA_F 1814 - 1401 1438 217930 37 chain 58347 chr7 159138663 + 131458516 131459265 MER4E1 777 + 0 777 53778 24 1 0 97 0 4 59 4 6 101 4 0 38 0 19 193 1 9 48 1 0 49 0 1 129 chain 5121 chr7 159138663 + 131472934 131473320 L1ME1 1623 - 101 388 193859 23 307 208 56 chain 27561 chr7 159138663 + 131474621 131474966 THE1C 375 + 6 350 94466 198 1 0 146 chain 24945 chr7 159138663 + 131495894 131496197 AluYf4 310 + 0 304 105080 4 0 1 85 4 5 114 1 0 95 chain 182941 chr7 159138663 + 131506679 131508910 HERV17-int 4347 - 0 4324 20687 400 1 0 212 0 1672 245 0 3 168 0 1 4 38 39 135 26 19 33 1 0 651 0 430 196 1 0 27 2 0 33 1 0 52 1 0 4 chain 4664 chr7 159138663 + 131508919 131508972 HERV17-int 4347 - 4155 4208 198922 53 chain 2470 chr7 159138663 + 131508973 131509000 HERV17-int 4347 - 4208 4235 233487 27 chain 2803 chr7 159138663 + 131509002 131509036 HERV17-int 4347 - 4235 4269 228696 34 chain 3321 chr7 159138663 + 131509041 131509087 HERV17-int 4347 - 4273 4320 218562 28 1 2 17 chain 101428 chr7 159138663 + 131509717 131510855 L1PA4 6152 - 1 1140 36413 167 4 5 967 chain 6558 chr7 159138663 + 131510855 131510946 L1P1 4361 + 4252 4341 179149 53 1 0 23 2 1 12 chain 39057 chr7 159138663 + 131540655 131541165 THE1D-int 1627 + 0 511 70657 9 0 1 4 2 1 22 1 0 150 0 1 239 4 5 79 chain 12296 chr7 159138663 + 131541170 131541430 THE1D 372 + 102 372 151026 58 71 81 65 3 6 12 1 0 15 2 0 33 chain 3047 chr7 159138663 + 131560130 131560162 MIR 256 + 96 128 224061 32 chain 71761 chr7 159138663 + 131599239 131600039 L1PA3long 6157 - 0 799 47583 108 2 0 550 0 1 140 chain 65144 chr7 159138663 + 131600039 131600753 L1PA3long 6157 + 4624 5338 50252 714 chain 536356 chr7 159138663 + 131663116 131669242 L1PA4 6152 - 11 6151 3398 751 1 0 99 5 9 210 0 1 719 0 4 231 0 2 426 0 1 479 1 0 44 1 0 1746 0 5 177 4 5 192 1 0 304 1 0 490 0 1 244 chain 17248 chr7 159138663 + 131669639 131669878 MER1B 344 + 41 344 134932 39 9 8 141 0 65 50 chain 156458 chr7 159138663 + 131692461 131694596 L1PBa 3878 - 1730 3793 23804 530 1 4 70 21 0 200 1 0 101 1 2 142 0 1 485 0 1 90 1 0 30 1 0 20 0 6 9 6 0 223 12 10 11 1 0 48 72 24 37 1 0 11 2 0 8 chain 132019 chr7 159138663 + 131698576 131700224 L1PB1 5432 - 747 2425 27632 35 0 1 21 3 0 21 9 8 134 1 5 451 3 0 74 1 4 79 6 0 6 0 6 113 1 3 216 0 22 171 0 5 303 chain 51766 chr7 159138663 + 131700226 131700985 L1PB1 5432 + 4677 5413 57778 120 1 0 6 0 3 136 0 1 58 0 1 101 5 4 6 1 0 25 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 31 8 14 15 15 2 29 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 9 chain 5779 chr7 159138663 + 131703315 131703394 MADE1 96 - 0 96 187361 26 0 1 10 1 0 14 0 17 28 chain 153054 chr7 159138663 + 131716736 131718437 L1PA3long 6157 - 553 2253 24224 783 5 0 165 0 1 618 0 3 130 chain 65740 chr7 159138663 + 131718440 131719161 L1P1 4361 + 2300 3021 50226 721 chain 8252 chr7 159138663 + 131727932 131728042 MSTD 398 - 0 110 169667 42 0 1 4 1 0 63 chain 119149 chr7 159138663 + 131742330 131743891 THE1B-int 1605 + 0 1594 31360 21 0 1 270 6 5 134 0 30 332 7 8 37 20 19 117 1 3 130 0 1 486 chain 3453 chr7 159138663 + 131769583 131769735 MER51A 677 + 179 344 216157 14 86 8 27 2 93 23 chain 7081 chr7 159138663 + 131774086 131774227 L1MC2 1988 + 1847 1988 176877 64 41 41 36 chain 44640 chr7 159138663 + 131800001 131800549 MER41A 554 + 0 554 63438 430 0 1 34 11 16 73 chain 4862 chr7 159138663 + 131857463 131857517 L1PA3long 6157 + 6088 6142 196661 54 chain 3973 chr7 159138663 + 131962548 131962618 MER58A 224 - 28 94 207794 10 2 0 18 4 2 36 chain 11723 chr7 159138663 + 131966913 131967046 L1PA3long 6157 - 0 133 153374 133 chain 4908 chr7 159138663 + 131979433 131979492 THE1B 368 - 308 368 196188 40 0 1 19 chain 69618 chr7 159138663 + 132073778 132074618 L1PA7 6471 - 750 1589 48565 97 0 2 28 0 1 71 0 1 68 3 0 506 2 0 65 chain 59636 chr7 159138663 + 132074623 132075334 L1PA7 6471 + 5757 6470 53031 591 0 1 109 0 1 11 chain 6039 chr7 159138663 + 132155271 132155679 MLT1D 503 + 22 407 184898 69 314 291 25 chain 5664 chr7 159138663 + 132183377 132183446 MER44A 345 + 245 314 188446 69 chain 30122 chr7 159138663 + 132225328 132225645 AluYb8 318 - 1 318 84417 317 chain 36194 chr7 159138663 + 132275075 132275594 MLT2A2 560 - 0 560 74634 54 0 1 4 1 0 87 1 12 56 10 44 124 11 9 44 2 1 15 1 0 109 chain 21870 chr7 159138663 + 132290670 132290938 AluSz6 309 + 30 298 120751 268 chain 28937 chr7 159138663 + 132319546 132319926 MLT2A1 477 + 0 385 89285 15 12 20 133 6 3 214 chain 25959 chr7 159138663 + 132342794 132343178 MSTA 426 - 0 426 100175 107 3 23 60 2 0 28 1 0 4 1 2 54 16 40 108 chain 212638 chr7 159138663 + 132346904 132349244 L1PA3long 6157 - 0 2348 18314 367 0 1 1701 0 7 272 chain 78005 chr7 159138663 + 132349244 132350107 L1PA3long 6157 + 2939 3801 44338 231 2 1 630 chain 295594 chr7 159138663 + 132358163 132361434 L1PA4 6152 - 5 3283 13666 1390 0 5 961 0 2 920 chain 11654 chr7 159138663 + 132366164 132366320 MLT2D 439 - 268 420 153674 76 4 0 76 chain 60116 chr7 159138663 + 132380117 132380795 L1PA5 6144 + 5459 6137 52762 678 chain 12233 chr7 159138663 + 132392004 132392154 Tigger4b 360 + 149 303 151290 19 0 4 131 chain 14859 chr7 159138663 + 132493497 132493655 L1PA2 6032 - 2 160 141760 158 chain 4481 chr7 159138663 + 132493655 132493704 L1PA2 6032 + 5729 5778 201002 49 chain 25980 chr7 159138663 + 132506508 132506780 AluYb9 318 - 4 276 100097 272 chain 31533 chr7 159138663 + 132550384 132550789 LTR3B_ 500 - 88 494 81594 5 2 0 56 5 4 48 0 1 178 0 4 95 1 0 15 chain 117510 chr7 159138663 + 132582579 132583930 LTR12C 1709 - 0 1709 31962 84 5 4 356 2 0 37 0 4 106 3 1 5 1 0 64 0 360 688 chain 45762 chr7 159138663 + 132586310 132586866 L1PA5 6144 - 734 1276 62263 22 8 9 14 1 0 303 0 1 32 15 0 161 chain 62391 chr7 159138663 + 132586868 132587588 L1PA5 6144 + 5419 6144 51725 25 1 6 694 chain 65525 chr7 159138663 + 132589236 132590009 L1PA6 6164 + 5390 6156 50329 503 4 0 91 3 0 172 chain 3912 chr7 159138663 + 132618887 132618961 MER5A1 166 - 5 77 208676 12 17 15 45 chain 2992 chr7 159138663 + 132667440 132667511 MIR 256 - 67 153 225202 30 27 42 14 chain 175275 chr7 159138663 + 132668779 132671174 SVA_D 2077 + 1 2077 21424 12 5 0 12 5 0 535 0 40 87 0 40 190 303 0 30 11 0 83 1 0 6 42 16 197 49 0 91 3 0 636 0 4 97 chain 10280 chr7 159138663 + 132669625 132669753 SVA_D 2077 + 1002 1181 67752 19 0 51 109 chain 2249 chr7 159138663 + 132669753 132669780 SVA_D 2077 + 1308 1335 97473 27 chain 8611 chr7 159138663 + 132669795 132669928 SVA_D 2077 + 949 1004 60591 54 78 0 1 chain 6264 chr7 159138663 + 132669849 132669927 SVA_D 2077 + 1230 1308 67752 78 chain 2719 chr7 159138663 + 132670059 132670101 SVA_D 2077 + 1137 1179 60591 42 chain 3173 chr7 159138663 + 132670298 132670347 SVA_D 2077 + 1425 1474 60591 49 chain 5580 chr7 159138663 + 132739476 132739553 L1MB8 1703 - 126 202 189276 5 1 0 71 chain 5325 chr7 159138663 + 132770888 132770955 L1MB7 1623 + 4 71 191771 67 chain 22907 chr7 159138663 + 132774443 132774785 THE1C 375 + 0 350 116080 47 0 6 17 16 17 116 17 18 129 chain 121502 chr7 159138663 + 132861717 132863088 SVA_D 2077 + 13 2077 30539 16 3 7 558 0 40 49 0 77 118 0 183 78 0 389 549 chain 3881 chr7 159138663 + 132865757 132865931 MLT1H 522 + 315 486 209154 24 111 108 39 chain 25635 chr7 159138663 + 132866880 132867183 AluSp 311 + 9 311 101559 39 1 0 263 chain 6351 chr7 159138663 + 132876776 132876861 L1MB1 2102 - 104 187 182364 56 2 0 27 chain 314041 chr7 159138663 + 132895276 132899399 L1PA7 6471 + 2644 6470 12852 49 0 8 329 18 17 293 4 5 237 0 1 426 1 0 571 2 1 87 0 4 277 1 0 671 2 1 686 0 1 28 307 0 134 chain 14149 chr7 159138663 + 132903625 132903870 L1PA16 3655 - 36 253 144044 13 6 0 10 25 6 12 7 4 172 chain 4296 chr7 159138663 + 132904717 132904781 MSTC 436 + 371 436 203266 35 5 6 24 chain 19531 chr7 159138663 + 132908317 132908644 THE1B 368 - 29 368 128567 17 17 16 64 1 0 12 7 6 10 0 1 4 1 0 4 10 17 19 1 0 94 0 9 66 chain 20338 chr7 159138663 + 132911478 132911779 THE1B 368 - 62 368 126116 55 10 9 12 1 0 17 0 4 9 10 14 17 1 0 169 chain 18817 chr7 159138663 + 132917502 132917745 AluSp 311 - 9 252 130623 89 9 8 73 0 1 72 chain 15967 chr7 159138663 + 132954701 132955063 THE1B 368 + 0 368 138467 44 84 79 46 10 11 16 3 0 5 29 42 125 chain 51477 chr7 159138663 + 132963574 132964142 L1PA4 6152 - 0 569 57986 531 0 1 37 chain 5236 chr7 159138663 + 132965988 132966050 L1PA2 6032 + 5970 6032 192658 62 chain 11804 chr7 159138663 + 132968129 132968370 L1MA8 2339 - 371 635 153013 14 2 0 23 3 1 44 18 46 23 30 30 38 1 0 45 chain 493302 chr7 159138663 + 133006030 133012104 L1PA6 6164 - 2 6164 7211 8 2 0 68 0 3 105 3 4 81 0 44 155 0 1 24 0 1 268 5 10 285 0 2 454 1 0 138 0 4 141 0 4 435 0 1 192 0 1 210 2 1 330 0 2 294 0 1 569 0 1 605 1 0 532 4 13 10 6 9 104 0 1 93 0 25 416 18 17 134 4 0 6 0 4 154 4 5 65 2 0 13 21 7 112 chain 219016 chr7 159138663 + 133012110 133015660 L1P2 5180 - 1946 5177 17944 51 2 0 12 8 7 416 0 1 198 2 0 37 1 9 107 0 4 64 2 1 47 0 1 190 1 5 84 0 1 13 8 10 167 12 15 649 5 1 56 0 3 283 0 15 46 27 6 75 15 18 76 53 0 5 23 0 11 0 1 25 26 14 4 0 1 58 19 0 77 250 52 20 189 159 136 chain 25295 chr7 159138663 + 133016208 133016484 AluYf4 310 - 0 276 103251 276 chain 29576 chr7 159138663 + 133023066 133023377 AluYb8 318 + 1 312 86295 311 chain 8677 chr7 159138663 + 133023810 133023985 L1PB1 5432 - 153 318 167317 43 1 0 15 2 1 42 12 10 9 5 1 14 3 2 4 1 0 24 chain 20003 chr7 159138663 + 133064757 133064981 L1PA5 6144 + 5898 6122 127134 224 chain 38438 chr7 159138663 + 133104723 133105133 L1PA2 6032 - 0 410 71529 410 chain 29599 chr7 159138663 + 133107690 133108006 AluYb9 318 + 0 315 86214 200 1 0 115 chain 63128 chr7 159138663 + 133108370 133109322 LTR12D 1347 + 0 1340 51389 70 1 44 93 91 129 23 0 1 142 1 209 120 9 12 17 11 20 68 0 81 20 10 9 24 1 0 90 0 1 29 0 6 132 chain 125416 chr7 159138663 + 133208195 133209577 L1PA2 6032 - 0 1386 29274 342 1 0 504 0 4 379 0 1 156 chain 5091 chr7 159138663 + 133226852 133226918 MER39B 650 - 33 98 194172 19 1 0 46 chain 24864 chr7 159138663 + 133264440 133264748 AluSc 308 - 10 308 105548 172 1 0 39 9 0 87 chain 29123 chr7 159138663 + 133266230 133266536 AluYk12 309 + 0 306 88442 306 chain 19553 chr7 159138663 + 133293296 133293588 AluSc5 308 - 2 296 128510 28 13 12 29 24 26 33 0 1 165 chain 69784 chr7 159138663 + 133328275 133329178 HERVL-int 5654 - 0 4250 48478 368 8 3355 527 chain 8752 chr7 159138663 + 133366359 133366464 THE1A 353 - 248 353 166912 105 chain 15356 chr7 159138663 + 133367110 133367332 THE1A 353 + 120 353 140326 73 6 5 20 12 24 111 chain 20194 chr7 159138663 + 133369933 133370288 THE1D 372 + 19 372 126547 32 9 0 23 3 0 6 17 22 26 0 4 29 37 39 25 1 0 147 chain 47758 chr7 159138663 + 133371302 133372153 L1PB1 5432 + 4643 5427 60650 17 0 4 133 2 1 5 0 9 36 0 2 203 4 3 41 63 17 20 1 0 12 1 0 10 22 16 48 23 18 43 1 0 8 29 19 19 2 0 5 2 1 13 2 0 23 2 1 21 1 0 13 1 0 18 2 0 5 chain 40760 chr7 159138663 + 133377765 133378312 MLT2A2 560 - 0 560 68225 6 0 4 83 0 5 6 6 1 42 5 16 188 6 5 198 1 0 6 chain 3520 chr7 159138663 + 133386637 133386675 Tigger4 2445 - 85 123 215078 38 chain 4414 chr7 159138663 + 133389709 133389789 Tigger7 736 - 265 345 201754 39 3 0 8 8 11 22 chain 3364 chr7 159138663 + 133390278 133390319 MER44D 709 + 39 80 217794 41 chain 8002 chr7 159138663 + 133457203 133457293 L1PA2 6032 + 5940 6030 171041 90 chain 24329 chr7 159138663 + 133481227 133481520 AluSc 308 + 0 290 108492 15 3 0 275 chain 38753 chr7 159138663 + 133518868 133519374 LTR10D 510 + 0 510 71073 62 10 12 4 0 1 22 1 0 161 1 2 75 1 2 169 chain 158823 chr7 159138663 + 133526717 133529012 L1PA15 4387 - 31 2312 23484 18 19 22 45 7 4 50 1 0 11 4 0 21 1 0 54 1 0 28 1 0 95 0 4 69 19 18 27 2 0 78 2 0 62 0 1 112 4 14 123 9 5 73 24 6 27 1 4 33 11 0 183 4 0 141 1 2 82 0 1 168 4 6 75 12 15 102 0 1 189 1 0 136 8 7 21 0 2 99 0 10 37 chain 20489 chr7 159138663 + 133541600 133541848 AluSc8 310 + 29 283 125658 104 7 13 137 chain 558707 chr7 159138663 + 133574180 133580208 L1PA2 6032 - 6 6032 429 4582 2 0 1444 chain 63847 chr7 159138663 + 133591064 133591822 LTR17 781 + 0 781 51081 25 0 1 64 1 0 236 1 2 387 0 22 44 chain 20182 chr7 159138663 + 133593593 133593846 L1PA7 6471 - 2 255 126587 253 chain 4435 chr7 159138663 + 133640081 133640192 MER52A 1651 - 659 761 201529 10 4 3 13 23 24 23 9 0 29 chain 19921 chr7 159138663 + 133645025 133645287 L1PB 1623 - 995 1256 127395 78 4 0 65 1 0 14 0 3 24 0 3 23 1 0 19 2 1 31 chain 10357 chr7 159138663 + 133645287 133645405 L1PB 1623 + 730 848 158122 118 chain 9197 chr7 159138663 + 133645405 133645526 L1PB 1623 - 904 1027 160045 116 0 2 5 chain 533802 chr7 159138663 + 133649076 133655557 L1PA7 6471 - 5 6471 3727 10 11 0 366 1 0 643 0 1 196 0 1 14 0 3 565 0 1 45 1 0 51 1 0 177 1 2 154 0 1 226 1 6 6 6 0 13 0 1 4 1 0 140 1 2 256 0 7 72 4 0 18 0 2 6 3 1 15 5 0 422 2 1 241 1 0 70 1 0 88 9 0 117 0 2 347 6 5 133 0 1 274 0 1 203 0 1 238 11 12 91 0 4 337 11 6 528 0 1 338 chain 5497 chr7 159138663 + 133713958 133714028 LTR22C 500 - 429 500 190076 33 0 1 37 chain 2820 chr7 159138663 + 133761670 133761700 Tigger5 388 - 26 56 228476 30 chain 30784 chr7 159138663 + 133769533 133769963 MER57A1 433 - 0 433 82892 38 0 1 110 0 2 172 30 0 8 1 31 71 chain 45393 chr7 159138663 + 133771391 133771946 MER41A 554 - 0 554 62605 337 5 4 213 chain 166989 chr7 159138663 + 133771955 133774700 MER41-int 2638 - 2 2522 22396 21 6 7 221 11 12 162 0 6 101 17 16 87 0 1 89 7 5 33 2 0 205 1 0 203 6 12 128 1 0 287 0 4 71 6 94 29 2 0 20 2 16 133 2 1 13 6 0 3 5 0 111 0 2 83 5 7 88 5 6 57 16 12 18 0 1 15 4 3 5 1 0 19 2 0 3 306 0 9 7 4 29 31 17 51 chain 44117 chr7 159138663 + 133775832 133776375 MER41A 554 - 0 542 64061 337 5 4 201 chain 16116 chr7 159138663 + 133777260 133777465 L1PA15-16 3068 + 971 1176 138005 205 chain 41657 chr7 159138663 + 133781161 133781704 MLT2A2 560 - 0 560 67083 45 2 0 54 2 1 47 5 18 83 0 1 200 0 1 72 0 5 33 chain 15105 chr7 159138663 + 133784277 133784450 AluYf5 307 - 0 175 141015 32 0 2 141 chain 28919 chr7 159138663 + 133791997 133792382 MER51B 395 - 22 395 89378 122 1 2 4 1 0 15 0 1 189 13 0 40 chain 64041 chr7 159138663 + 133798490 133799390 MER4D1 891 + 0 882 50994 26 11 0 21 4 5 67 4 11 89 4 1 132 0 1 77 2 1 146 4 0 152 10 0 37 0 1 36 5 4 62 0 2 11 chain 10509 chr7 159138663 + 133831883 133832014 AluY 311 + 0 127 158210 67 4 0 60 chain 21746 chr7 159138663 + 133858590 133858874 AluSc5 308 + 10 294 121222 124 17 17 143 chain 4391 chr7 159138663 + 133879152 133879206 MLT2D 439 - 1 58 202068 44 0 3 10 chain 43278 chr7 159138663 + 133879587 133880251 LTR8 732 - 8 721 65081 50 3 5 51 4 5 31 58 55 19 0 5 20 0 1 134 9 36 156 1 7 110 0 9 10 0 1 8 chain 34562 chr7 159138663 + 133889646 133890123 LTR12F 595 - 0 595 76808 235 10 5 116 25 148 91 chain 4274 chr7 159138663 + 133900815 133900912 MIR 256 + 77 194 203552 20 14 32 31 12 14 20 chain 529378 chr7 159138663 + 133923848 133929948 L1PA5 6144 + 0 6144 4261 121 0 14 24 7 19 966 0 5 20 9 0 817 0 1 326 3 1 647 0 2 212 0 1 506 1 0 8 0 1 666 0 3 934 1 0 357 0 1 134 1 2 180 0 16 160 chain 20840 chr7 159138663 + 134024935 134025237 THE1B 368 - 61 368 124485 65 1 0 9 2 1 18 0 4 10 1 0 4 8 11 4 0 1 11 1 0 89 0 1 79 chain 55195 chr7 159138663 + 134034260 134034879 L1PA4 6152 + 5525 6143 55586 373 1 0 245 chain 34367 chr7 159138663 + 134058254 134058693 MER4A1 472 - 32 472 77110 175 1 0 129 3 5 98 1 0 5 2 3 25 chain 51024 chr7 159138663 + 134063256 134063956 MER51A 677 - 0 677 58292 61 1 0 77 3 4 7 2 0 127 0 5 167 0 1 27 13 3 19 20 3 176 chain 3084 chr7 159138663 + 134075928 134075961 MSTA 426 - 24 57 223239 33 chain 23758 chr7 159138663 + 134075968 134076368 MSTA 426 - 19 426 111719 117 4 3 21 43 44 8 0 7 9 6 5 34 0 1 29 1 0 53 1 2 44 0 1 10 1 0 19 chain 13813 chr7 159138663 + 134095389 134095707 THE1D 372 + 72 372 145208 29 6 5 54 0 1 14 115 97 100 chain 34376 chr7 159138663 + 134116938 134117418 MER1A 529 - 9 529 77097 55 25 63 267 5 8 113 1 0 14 chain 3609 chr7 159138663 + 134148249 134148290 L1M2c 2366 + 593 634 213488 41 chain 7468 chr7 159138663 + 134166426 134166515 MER31A 484 + 0 89 174358 89 chain 51039 chr7 159138663 + 134171751 134172378 HERV9-int 5642 - 5002 5631 58286 107 6 8 514 chain 28400 chr7 159138663 + 134172415 134172869 LTR12F 595 - 25 595 91583 219 0 64 14 49 1 24 0 130 14 6 1 12 25 0 91 chain 18818 chr7 159138663 + 134205311 134205521 L1PA7 6471 + 6247 6457 130619 210 chain 30505 chr7 159138663 + 134206728 134207454 MER4A1 472 + 30 472 83419 41 4 5 26 309 0 94 0 3 26 0 21 120 0 3 5 4 1 97 chain 39980 chr7 159138663 + 134230928 134231435 LTR10D 510 + 0 510 69343 65 9 11 26 1 0 168 0 1 113 0 1 125 chain 70586 chr7 159138663 + 134238196 134240643 HERVS71-int 4705 + 2385 4446 48121 15 1 0 8 7 4 11 3 0 8 1 0 7 1 0 4 10 6 10 35 23 9 1 0 4 1 0 11 2 1 9 3 0 42 1 0 53 1 0 18 5 4 38 2 0 17 2 0 9 2 1 21 23 17 10 2 1 13 3 1 12 1 0 10 81 64 21 1 0 6 9 7 32 2 0 8 1 0 8 2 1 13 82 8 19 1 0 20 1 0 4 1 0 8 1 0 16 144 112 40 1 0 12 16 13 13 8 5 19 1 0 13 1 0 10 3 0 9 1 0 9 21 15 13 27 20 4 1 0 27 35 29 15 2 1 11 8 6 57 25 20 7 1 0 28 1 0 33 5 2 53 2 0 18 1 0 36 1 0 10 2 0 11 1 0 12 2 0 8 8 4 32 1 0 7 1 0 4 2 0 4 1 0 29 9 5 19 1 0 7 1 0 4 1 0 33 4 1 22 1 0 18 2 0 6 10 9 16 2 0 16 1 0 20 1 0 38 2 1 11 4 2 13 23 18 47 1 0 12 6 4 14 2 0 18 2 0 6 144 104 19 170 113 20 2 1 14 20 12 15 chain 10003 chr7 159138663 + 134247171 134247384 LTR12 884 - 483 635 160568 24 2 0 38 47 0 17 7 6 45 11 0 22 chain 3312 chr7 159138663 + 134247235 134247280 LTR12 884 - 499 542 200915 9 2 0 34 chain 85201 chr7 159138663 + 134254320 134255368 MER11B 1079 + 0 1057 41452 358 0 5 407 1 3 138 8 9 56 1 0 11 0 1 42 0 1 26 chain 180187 chr7 159138663 + 134272785 134275568 HERV17-int 4347 + 12 4347 20974 15 1 0 50 2 1 15 2 0 19 2 0 27 1 0 45 514 0 97 0 5 44 14 444 577 1 2 117 1 2 146 33 0 121 3 0 321 0 1672 615 chain 40580 chr7 159138663 + 134272970 134273478 MER9a3 513 - 0 513 68470 79 0 1 177 1 0 30 0 1 47 4 5 62 0 1 87 0 1 8 0 1 13 chain 19081 chr7 159138663 + 134280151 134280471 THE1D 372 - 36 365 129878 45 6 8 86 31 37 12 24 25 116 chain 132705 chr7 159138663 + 134281896 134284032 L1PREC2 3366 - 318 2448 27478 32 9 7 11 49 35 13 3 0 29 2 0 9 62 49 9 3 0 5 1 0 42 2 1 54 2 0 312 13 49 36 5 0 326 112 11 54 4 5 55 11 12 127 3 5 100 38 134 105 0 1 99 0 1 14 0 3 181 1 0 190 0 1 13 chain 18633 chr7 159138663 + 134297509 134297873 THE1B 368 - 0 368 131127 40 23 22 38 1 0 26 68 73 52 9 10 107 chain 26618 chr7 159138663 + 134341518 134341865 THE1C-int 1605 - 7 350 97606 49 1 0 86 0 1 4 5 4 120 3 0 79 chain 34848 chr7 159138663 + 134350004 134350379 L1HS 6032 + 5657 6032 76408 375 chain 8329 chr7 159138663 + 134381817 134381907 L1PA2 6032 + 5941 6031 169223 90 chain 23162 chr7 159138663 + 134392249 134392531 AluSp 311 + 10 297 114843 122 1 0 44 0 6 115 chain 8510 chr7 159138663 + 134400714 134400809 L1PA3long 6157 - 2 97 168248 95 chain 24450 chr7 159138663 + 134425902 134426227 THE1C 375 - 39 375 107806 140 4 10 45 1 5 87 0 1 48 chain 13736 chr7 159138663 + 134450381 134450693 MSTA 426 + 18 192 145482 118 138 0 56 chain 16548 chr7 159138663 + 134476511 134476834 THE1B 368 - 30 367 136802 26 1 2 68 1 0 12 1 0 16 3 7 6 0 3 29 1 0 43 70 79 46 chain 58388 chr7 159138663 + 134538468 134539149 L1PA7 6471 - 7 685 53757 46 1 2 105 4 0 179 0 1 45 1 0 300 chain 26503 chr7 159138663 + 134541909 134542207 AluYc3 301 - 2 301 98032 184 1 2 113 chain 2782 chr7 159138663 + 134553561 134553598 MIRb 242 + 41 76 228988 25 2 0 10 chain 3712 chr7 159138663 + 134560434 134560479 MER61A 341 + 295 341 211766 34 0 1 11 chain 5926 chr7 159138663 + 134562339 134562431 MER2 342 + 80 173 185929 44 8 9 40 chain 40793 chr7 159138663 + 134580493 134581064 LTR10A 586 + 0 571 68185 164 1 0 37 6 7 72 2 3 116 0 1 103 30 11 8 0 17 32 chain 15777 chr7 159138663 + 134587687 134588054 L1MC1 2226 + 1848 2197 139027 6 1 0 31 9 3 29 1 0 63 3 0 16 2 0 49 27 18 19 6 1 15 49 59 27 1 0 13 chain 19052 chr7 159138663 + 134609481 134609844 THE1D 372 + 11 372 129963 43 9 0 11 25 26 32 5 9 34 9 10 13 22 23 12 1 0 135 1 2 11 chain 26317 chr7 159138663 + 134614006 134614632 L1PB1 5432 - 2 539 98753 4 1 0 8 1 0 13 2 0 11 2 1 23 1 0 16 105 88 30 2 1 13 6 5 48 3 1 9 5 1 14 3 2 4 1 0 22 57 0 13 1 0 197 0 2 11 chain 4221 chr7 159138663 + 134632706 134632757 MIR 256 - 101 157 204283 9 0 5 42 chain 16853 chr7 159138663 + 134634558 134634783 MER30 238 - 0 238 135966 114 4 19 5 2 0 100 chain 15403 chr7 159138663 + 134659767 134660118 THE1B 368 + 0 368 140193 47 0 6 8 74 81 27 43 49 14 1 0 7 6 5 124 chain 3234 chr7 159138663 + 134660138 134660178 LTR72B 493 - 54 94 220361 40 chain 519492 chr7 159138663 + 134660753 134666896 L1PA5 6144 + 7 6132 5215 113 0 14 70 0 1 738 21 0 211 24 15 356 0 1 311 0 1 101 1 0 374 2 1 89 0 1 754 1 0 18 1 0 703 2 0 1283 5 4 4 0 1 123 1 0 128 0 1 709 chain 3547 chr7 159138663 + 134668649 134668686 Tigger2a 444 + 52 89 214597 37 chain 27164 chr7 159138663 + 134700483 134700810 AluY 311 + 0 311 95705 126 16 0 185 chain 23807 chr7 159138663 + 134704345 134704606 L1PA5 6144 + 4661 4922 111436 261 chain 105910 chr7 159138663 + 134704606 134705816 L1PA5 6144 + 4926 6144 35277 371 0 4 688 0 1 136 0 3 15 chain 77515 chr7 159138663 + 134706429 134707540 L1PA8 5853 - 12 1125 44731 80 6 5 13 8 7 38 11 13 6 1 0 71 2 0 44 5 4 330 20 21 143 1 3 61 4 7 267 chain 35256 chr7 159138663 + 134729466 134729853 L1PA3long 6157 - 0 387 75854 387 chain 18211 chr7 159138663 + 134731102 134731564 L1MC1 2226 - 52 478 132309 22 12 13 10 8 0 6 1 0 33 74 61 37 38 33 45 1 0 26 9 3 31 15 12 94 chain 538978 chr7 159138663 + 134751509 134757675 L1PA4 6152 + 7 6152 2994 115 5 6 418 3 0 596 0 2 92 0 1 224 0 1 480 1 0 164 1 4 66 1 5 70 0 2 53 0 1 198 0 2 392 0 1 59 0 1 205 1 0 1183 0 4 149 0 1 52 40 0 830 1 0 612 0 1 155 chain 32568 chr7 159138663 + 134758295 134758722 LTR2 463 - 12 463 79911 76 12 13 167 1 0 4 8 29 104 0 3 55 chain 4931 chr7 159138663 + 134762429 134762493 MER50B 698 + 548 611 195922 46 1 0 17 chain 204863 chr7 159138663 + 134790129 134793069 L1PREC2 3366 - 318 3222 18866 38 7 5 34 22 8 11 3 1 25 8 6 14 11 6 12 4 1 9 16 11 13 2 0 4 1 0 44 1 0 54 18 8 154 0 3 218 1 2 42 0 2 9 0 6 120 3 4 63 0 2 32 0 10 26 0 1 82 0 1 547 10 14 87 24 20 45 1 0 336 13 12 250 0 4 39 0 1 120 2 0 92 1 0 100 11 9 33 4 1 12 1 0 12 1 0 24 1 0 7 7 2 20 6 0 6 1 4 26 chain 485426 chr7 159138663 + 134806453 134816175 L1PA8A 6298 + 34 6290 7543 6 1 0 16 1 0 11 3 0 6 34 27 19 26 12 16 2 1 9 2 1 18 2 0 13 2 0 13 9 6 21 1 0 6 1 0 8 1 0 16 16 9 40 2 1 21 9 1 77 2 0 16 1 0 8 5 3 75 1 0 590 1 5 34 1 0 33 0 1 329 13 15 200 0 2 782 4 0 59 0 1 141 0 2 102 2 0 370 2 0 185 1 0 10 8 9 10 0 1 7 2 1 19 0 4 58 0 1 4 0 1 144 4 7 68 8 7 493 5 6 244 0 1 78 0 1 125 0 4 239 10 8 46 0 22 310 0 1 199 2 1 37 0 2 52 298 0 9 9 0 96 1 0 283 1 2 30 3138 0 69 1 0 220 chain 6921 chr7 159138663 + 134813092 134813178 MER41A 554 - 270 356 178025 86 chain 6801 chr7 159138663 + 134855881 134855994 HERV1_LTRd 520 + 9 124 178951 22 0 3 29 1 2 17 6 4 38 chain 186909 chr7 159138663 + 134857813 134860590 Harlequin-int 5206 + 142 3715 20341 17 11 11 52 42 41 19 0 4 8 17 15 47 16 14 56 6 2 17 6 8 32 3 0 401 1 779 296 0 6 291 104 95 138 1 0 211 0 3 90 10 11 66 0 1 47 9 22 192 3 4 160 0 1 5 1 0 77 4 3 42 37 46 25 6 6 115 23 26 29 7 0 9 3 8 25 chain 25695 chr7 159138663 + 134866218 134866637 HERV1_LTRd 520 + 0 414 101305 14 0 3 6 0 3 37 8 12 75 0 1 4 1 0 69 8 11 12 4 0 85 14 5 22 7 2 53 chain 4942 chr7 159138663 + 134935527 134935614 MER53 195 - 102 189 195782 20 8 9 17 1 0 41 chain 174475 chr7 159138663 + 134980013 134982201 L1PA8 5853 + 3646 5853 21542 66 0 6 415 0 9 198 6 4 117 0 5 436 0 1 106 0 2 84 3 6 266 10 12 125 2 0 47 0 1 12 1 0 46 2 0 68 2 1 8 2 1 38 0 1 8 7 6 19 1 0 93 chain 39834 chr7 159138663 + 134985223 134985755 LTR19B 566 + 0 566 69572 106 0 13 43 0 12 320 32 42 24 1 0 6 chain 11604 chr7 159138663 + 134992650 134992822 THE1D 372 + 0 165 153875 15 1 3 38 10 1 108 chain 29191 chr7 159138663 + 135009907 135010218 AluYa5 310 - 0 310 88093 178 1 0 132 chain 14076 chr7 159138663 + 135147937 135148520 L1PA14 3548 + 3245 3481 144302 61 329 0 17 1 0 9 16 11 33 5 3 14 1 0 5 1 0 16 1 0 41 6 0 10 1 0 16 chain 29235 chr7 159138663 + 135189223 135189533 AluYa5 310 - 0 310 87880 310 chain 14922 chr7 159138663 + 135201179 135201399 MER30 238 + 0 238 141570 109 14 35 45 3 0 49 chain 4421 chr7 159138663 + 135213585 135213668 MER5A1 166 + 1 84 201687 17 11 14 8 3 0 44 chain 18111 chr7 159138663 + 135220350 135220585 THE1A 353 + 0 234 132566 109 2 1 124 chain 16503 chr7 159138663 + 135230666 135230998 MSTD 398 - 39 396 136906 34 4 5 64 99 125 79 2 0 50 chain 17186 chr7 159138663 + 135245385 135245692 L1MB2 1706 + 1385 1686 135073 66 1 4 24 3 4 91 35 24 13 1 0 11 8 7 15 0 3 39 chain 23523 chr7 159138663 + 135263945 135264232 AluSp 311 - 15 301 112996 270 6 5 11 chain 16660 chr7 159138663 + 135294027 135294219 AluY 311 + 83 276 136507 49 0 1 143 chain 39669 chr7 159138663 + 135324463 135324972 L1PA8 5853 + 5349 5853 69798 45 0 2 77 1 2 4 1 0 85 1 0 46 2 0 69 1 0 14 1 0 47 3 2 18 2 1 92 chain 26627 chr7 159138663 + 135353638 135353989 THE1B 368 - 0 368 97566 58 6 4 4 0 1 42 0 2 88 1 0 103 0 2 5 0 15 44 chain 32763 chr7 159138663 + 135532398 135532778 L1PA5 6144 - 3 383 79592 380 chain 230085 chr7 159138663 + 135532788 135535332 L1PA3long 6157 - 5 2537 17302 339 0 1 504 0 2 104 0 1 92 15 0 849 1 0 640 chain 21064 chr7 159138663 + 135535332 135535564 L1PA3long 6157 + 3326 3558 121738 232 chain 66384 chr7 159138663 + 135536583 135537590 L1PB1 5432 - 12 985 49916 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 3 0 15 1 0 44 1 0 18 1 0 48 31 24 7 1 0 25 5 0 10 1 2 51 1 0 5 0 1 341 0 2 71 4 0 10 0 1 11 2 0 5 0 6 63 3 0 36 8 9 44 chain 2489 chr7 159138663 + 135542555 135542597 MER52D 1964 - 771 814 233233 27 4 5 11 chain 6251 chr7 159138663 + 135545560 135545646 MLT1B 390 - 24 110 183163 47 0 1 18 1 0 20 chain 204714 chr7 159138663 + 135557480 135559814 L1PA4 6152 - 11 2302 18876 102 0 1 810 0 1 620 0 1 161 46 0 595 chain 34549 chr7 159138663 + 135565876 135566393 L1PA16 3655 + 2073 2595 76836 41 2 1 274 0 4 46 51 53 103 chain 13233 chr7 159138663 + 135577334 135577483 AluYk4 311 + 161 310 147349 149 chain 6008 chr7 159138663 + 135585545 135585645 Tigger2b_Pri 1066 - 625 723 185172 27 14 12 59 chain 44851 chr7 159138663 + 135594186 135594726 MER41A 554 + 15 554 63232 511 1 0 28 chain 7563 chr7 159138663 + 135607056 135607231 MER58A 224 - 2 181 173780 44 71 75 60 chain 4242 chr7 159138663 + 135649693 135649848 MER58A 224 + 46 208 203984 30 89 96 36 chain 5354 chr7 159138663 + 135653741 135653799 L1PA2 6032 - 212 270 191492 58 chain 17164 chr7 159138663 + 135653799 135653999 L1PA2 6032 + 5837 6032 135126 29 5 0 166 chain 2829 chr7 159138663 + 135665707 135665737 MER51A 677 - 448 478 228260 30 chain 6358 chr7 159138663 + 135675924 135676108 MER4C 627 - 0 185 182323 59 75 74 30 6 8 14 chain 10548 chr7 159138663 + 135677517 135677630 L1PA2 6032 - 214 327 158052 113 chain 11011 chr7 159138663 + 135677630 135677749 L1PA2 6032 + 5912 6031 156165 119 chain 33993 chr7 159138663 + 135697457 135697871 LTR12C 1709 - 2 413 77627 82 8 6 78 1 0 245 chain 20675 chr7 159138663 + 135728665 135728969 THE1B 368 + 0 306 125054 126 3 0 43 1 0 7 2 3 6 1 0 13 0 3 7 1 6 14 1 0 13 1 0 65 chain 26178 chr7 159138663 + 135750619 135750909 AluY 311 + 0 297 99281 96 0 7 194 chain 4374 chr7 159138663 + 135761626 135761681 L1PB4 2604 + 2444 2499 202271 55 chain 495448 chr7 159138663 + 135778956 135784440 L1PA3long 6157 - 0 6156 7105 843 0 4 2044 0 4 670 0 2 623 0 515 233 0 16 299 0 128 404 0 2 216 0 1 152 chain 72152 chr7 159138663 + 135792168 135792960 L1PA3long 6157 - 0 793 47406 197 0 1 595 chain 504516 chr7 159138663 + 135793672 135800073 L1PA7 6471 - 19 6208 6571 401 1 0 435 0 2 228 0 1 374 0 40 361 0 1 34 0 1 757 1 5 230 0 1 2 0 3 90 1 2 148 1 0 466 1 0 238 0 1 137 0 1 66 0 3 120 0 20 148 1 0 893 1 0 56 1 11 6 0 1 169 9 10 415 306 7 163 1 2 140 chain 24040 chr7 159138663 + 135810045 135810410 THE1B 368 - 0 368 110118 56 7 6 56 18 26 10 18 15 30 1 0 169 chain 6238 chr7 159138663 + 135814729 135814807 HY3 101 - 1 79 183261 78 chain 14866 chr7 159138663 + 135823228 135823458 Tigger4a 237 + 5 237 141732 123 12 13 38 6 0 8 4 11 39 chain 30757 chr7 159138663 + 135857265 135857689 L1PA8 5853 + 5431 5848 82943 129 13 12 38 2 0 68 2 1 11 1 0 50 2 1 19 1 0 88 chain 29817 chr7 159138663 + 135870234 135870618 L1PA8A 6298 - 10 407 85388 95 2 3 17 0 10 61 7 8 101 0 1 101 chain 22906 chr7 159138663 + 135876030 135876325 AluSp 311 + 6 294 116083 104 2 1 143 6 0 40 chain 315981 chr7 159138663 + 135906923 135911269 L1PA7 6471 + 3 6466 12762 197 4 8 34 26 34 91 4 3 42 15 1 103 8 0 129 5 7 523 0 1 217 0 3 273 0 1 37 0 21 103 6 0 495 0 1 21 0 1 209 4 2354 66 1 0 6 10 11 336 304 3 139 0 5 143 1 0 81 0 2 62 0 5 45 0 27 68 0 13 276 0 2 122 0 2 140 chain 5644 chr7 159138663 + 135921674 135921745 LOR1b 457 - 339 411 188618 18 0 1 53 chain 30794 chr7 159138663 + 135928685 135929115 L1PA8 5853 - 0 423 82876 81 2 0 12 1 0 19 3 2 38 22 22 68 3 1 48 1 0 132 chain 45393 chr7 159138663 + 135948227 135948930 HERVK14-int 1672 - 7 1662 62606 6 1 0 74 7 8 58 1 0 9 70 1027 178 6 5 161 0 1 10 1 0 40 1 0 47 1 0 11 1 0 20 chain 14080 chr7 159138663 + 135985603 135985874 L1PA11 4918 + 4314 4567 144290 11 0 1 6 2 0 61 3 2 74 4 3 16 1 0 20 44 31 15 1 0 13 chain 178421 chr7 159138663 + 136000271 136002482 L1PA8 5853 - 0 2206 21126 94 1 0 18 2 1 52 2 1 8 2 1 70 2 0 46 1 0 476 0 2 217 0 1 176 1 2 164 24 24 166 1 0 448 2 0 173 1 2 64 chain 18492 chr7 159138663 + 136008657 136009020 THE1B 368 - 0 368 131526 39 26 23 57 9 17 18 40 38 41 25 27 108 chain 558086 chr7 159138663 + 136098936 136104958 L1PA2 6032 - 8 6029 494 834 1 0 5187 chain 273247 chr7 159138663 + 136116394 136119787 L1PA7 6471 + 730 6466 15005 284 2 3 184 1 8 117 9 8 61 1 4 288 11 10 179 3 27 35 9 0 8 0 2310 266 0 2 147 0 4 274 1 0 117 0 1 430 2 1 119 1 4 836 0 1 8 chain 107286 chr7 159138663 + 136125485 136127163 L1PB1 5432 - 14 1613 34893 14 1 0 13 1 0 21 1 0 24 2 0 11 10 9 18 1 3 9 14 0 15 1 0 45 2 1 13 3 2 52 2 0 9 11 7 6 1 0 10 1 0 22 90 22 69 5 0 185 32 26 107 0 2 80 0 6 120 0 1 281 2 3 45 1 9 141 13 24 35 1 0 75 0 1 63 chain 70092 chr7 159138663 + 136127651 136128620 L1PB 1623 + 428 1376 48353 50 19 0 7 0 5 349 4 3 122 3 2 89 0 2 37 0 1 208 18 10 63 chain 227137 chr7 159138663 + 136151831 136155178 L1PA11 4918 - 413 3745 17480 17 1 0 16 3 1 65 4 0 10 8 7 61 33 26 97 0 1 6 6 8 40 1 2 221 0 13 101 0 1 146 1 3 5 2 0 182 29 17 91 0 1 81 0 1 4 1 0 54 2 0 53 5 19 522 1 0 93 10 11 46 12 13 298 0 1 38 39 7 38 0 3 270 0 3 24 8 7 146 15 17 34 14 13 32 4 5 171 85 89 101 chain 14991 chr7 159138663 + 136162030 136162216 L1PA7 6471 - 2 186 141350 9 2 0 175 chain 2929 chr7 159138663 + 136171727 136171879 MER5B 177 - 5 158 226525 19 6 7 15 1 0 7 83 84 21 chain 21165 chr7 159138663 + 136176504 136176856 THE1D 372 + 0 372 123331 61 6 16 89 27 30 5 2 0 15 14 22 95 5 6 33 chain 7924 chr7 159138663 + 136184199 136184290 L1PA5 6144 - 13 104 171488 91 chain 40476 chr7 159138663 + 136224313 136224922 L1PA8 5853 + 5210 5837 68626 272 19 47 13 1 0 22 1 0 44 2 0 70 20 17 12 1 0 33 2 1 17 7 6 73 chain 108404 chr7 159138663 + 136246002 136247462 L1P3 4156 - 60 1519 34589 313 0 3 227 1 5 28 5 4 22 1 0 65 3 0 141 0 1 79 15 15 108 7 5 309 3 1 133 chain 411354 chr7 159138663 + 136258560 136263758 HERVL-int 5654 - 0 5654 9764 58 0 1 10 3 6 144 0 2 11 5 7 38 0 2 949 5 6 58 9 23 66 1 0 305 0 2 120 0 12 85 1 0 5 0 1 206 1 0 19 4 7 246 0 318 245 17 16 80 0 1 457 1 7 400 0 4 230 36 36 360 0 1 198 4 73 70 0 5 23 0 4 82 0 3 166 5 8 60 0 2 134 0 1 281 chain 27112 chr7 159138663 + 136263861 136264254 MLT2A1 477 - 94 477 95894 178 0 1 10 1 0 4 11 9 11 4 1 64 1 0 26 8 4 75 chain 30165 chr7 159138663 + 136273868 136274186 AluYb8 318 - 0 318 84287 318 chain 51635 chr7 159138663 + 136282746 136283377 L1PA7 6471 - 10 646 57874 147 0 1 34 0 2 5 2 0 204 0 1 134 0 3 105 chain 43751 chr7 159138663 + 136283377 136283893 L1P2 5180 + 1507 2027 64504 340 0 4 176 chain 22178 chr7 159138663 + 136298042 136298305 L1PA4 6152 + 5885 6152 119448 118 2 1 137 0 5 6 chain 3156 chr7 159138663 + 136300950 136300996 L1MA4 2864 - 100 141 221802 26 5 0 15 chain 27922 chr7 159138663 + 136307716 136308023 L1PA2 6032 + 5725 6032 93271 307 chain 51246 chr7 159138663 + 136313919 136314614 LTR12 884 + 0 884 58155 25 1 0 52 1 67 40 5 10 21 0 1 67 1 0 53 1 2 38 2 0 119 0 8 35 0 1 9 0 103 97 0 8 128 chain 28324 chr7 159138663 + 136315135 136315443 AluYa5 310 - 4 310 91849 180 2 0 126 chain 70914 chr7 159138663 + 136365072 136365843 L1PA3long 6157 - 1 772 47953 771 chain 44286 chr7 159138663 + 136365884 136366366 L1PA3long 6157 + 4862 5344 63840 482 chain 10350 chr7 159138663 + 136371941 136372077 MER85 139 + 2 139 158902 107 1 2 28 chain 27164 chr7 159138663 + 136401960 136402257 AluYd8 298 + 0 289 95707 255 8 0 34 chain 39030 chr7 159138663 + 136406203 136406629 L1PA4 6152 - 9 435 70692 426 chain 85791 chr7 159138663 + 136429893 136430976 MER11B 1079 - 0 1079 41230 29 1 0 173 0 1 103 5 7 25 10 0 194 6 5 4 0 1 15 0 4 518 chain 46942 chr7 159138663 + 136436749 136437330 LTR10C 591 + 14 591 61268 20 3 1 103 3 1 452 chain 171173 chr7 159138663 + 136447571 136449463 L1PA3long 6157 - 0 1893 21918 11 1 4 842 2 0 1036 chain 3348 chr7 159138663 + 136449463 136450856 L1PA3long 6157 + 2859 4254 26538 318 1 0 92 0 1 346 0 2 636 chain 38532 chr7 159138663 + 136454639 136455080 L1PA5 6144 - 6 445 71392 362 2 0 77 chain 548886 chr7 159138663 + 136459503 136465530 L1PA2 6032 - 1 6026 1592 260 3 4 447 1 0 1943 0 1 1556 1 0 116 2 0 1698 chain 232013 chr7 159138663 + 136480860 136483388 L1PA2 6032 + 3499 6032 17196 780 0 2 750 0 5 985 2 0 11 chain 3694 chr7 159138663 + 136488286 136488333 L1MB4 1306 + 622 670 212018 42 0 1 5 chain 23089 chr7 159138663 + 136488428 136488708 AluY 311 + 9 296 115200 80 0 4 39 0 1 142 0 2 19 chain 163218 chr7 159138663 + 136497980 136500000 L1PA7 6471 - 3 2574 22921 444 22 569 201 1 0 145 3 0 3 1 0 25 0 1 131 22 21 256 0 4 162 0 1 114 2 4 111 0 2 377 chain 78216 chr7 159138663 + 136500007 136501001 L1P3 4156 - 269 1270 44408 52 3 4 123 0 9 7 0 3 5 15 3 49 4 5 10 0 1 519 0 4 207 chain 10836 chr7 159138663 + 136503585 136503716 L1PA5 6144 + 6014 6144 156840 118 2 1 11 chain 63682 chr7 159138663 + 136504529 136505294 L1P3 4156 - 513 1282 51150 33 0 1 29 1 3 394 0 1 308 chain 2759 chr7 159138663 + 136505583 136506731 L1PA3long 6157 + 5006 6155 26538 1017 0 1 131 chain 550185 chr7 159138663 + 136515938 136521963 L1PA2 6032 + 2 6030 1425 72 0 1 2115 0 2 1310 4 0 732 0 4 1792 chain 17102 chr7 159138663 + 136524950 136525181 L1PA8A 6298 + 6060 6290 135310 110 19 18 102 chain 26130 chr7 159138663 + 136573527 136573820 AluY 311 + 16 308 99479 107 1 0 185 chain 26672 chr7 159138663 + 136608960 136609266 L1PA4 6152 - 0 307 97417 155 0 1 151 chain 23320 chr7 159138663 + 136644386 136644684 AluSp 311 + 9 309 114092 44 4 5 222 0 1 28 chain 520242 chr7 159138663 + 136663203 136669647 L1PA7 6471 - 4 6467 5130 175 0 1 589 0 2 79 1 4 536 0 1 433 0 1 71 11 12 195 1 0 4 0 1 83 5 6 68 0 1 199 1 0 5 0 1 476 0 1 58 8 0 166 0 1 14 0 1 393 0 4 243 5 7 261 0 2 324 0 1 478 0 11 272 1 0 6 2 3 301 6 3 562 2 0 102 4 0 25 1 2 165 20 21 93 chain 10386 chr7 159138663 + 136679265 136679388 AluSp 311 - 0 123 158757 123 chain 3559 chr7 159138663 + 136695882 136695933 Ricksha_c 1012 - 405 459 214351 19 3 6 29 chain 44017 chr7 159138663 + 136725563 136726104 MER41A 554 + 0 546 64182 369 0 6 53 1 0 118 chain 31441 chr7 159138663 + 136732208 136732557 L1PA3long 6157 + 5806 6157 81747 202 0 2 147 chain 70173 chr7 159138663 + 136750261 136751032 L1PA3long 6157 - 0 771 48321 771 chain 6760 chr7 159138663 + 136757611 136758004 MLT1B 390 + 67 367 179244 29 294 201 70 chain 27905 chr7 159138663 + 136786317 136786623 AluYf4 310 - 4 310 93350 306 chain 418677 chr7 159138663 + 136787908 136793072 L1PA7 6471 + 54 6465 9568 29 0 4 140 22 35 353 8 9 47 0 47 518 0 1 156 0 3 268 3 12 58 12 15 4 1 0 115 0 1 25 0 3 263 0 5 45 0 1162 106 0 1 132 0 1 220 17 0 371 0 11 735 1 0 264 0 1 459 0 1 24 0 1 471 0 1 288 3 0 6 chain 113740 chr7 159138663 + 136803204 136804454 L1PA2 6032 - 0 1249 33166 13 2 0 178 0 1 1057 chain 5295 chr7 159138663 + 136804454 136804514 L1P1 4361 + 3348 3408 192064 60 chain 310822 chr7 159138663 + 136821093 136824535 L1PA3long 6157 + 2720 6157 12969 727 0 3 904 0 4 1478 1 0 168 8 0 148 3 0 5 chain 2484 chr7 159138663 + 136834818 136834845 LTR37A 408 - 69 96 233279 27 chain 28403 chr7 159138663 + 136851624 136851925 AluYa5 310 + 0 300 91566 132 1 0 168 chain 33296 chr7 159138663 + 136862214 136862615 L1PA8A 6298 + 5879 6281 78734 373 0 1 28 chain 49225 chr7 159138663 + 136863301 136864173 L1MA2 4263 + 3320 4114 59571 115 17 19 73 4 0 21 36 19 17 9 3 72 12 11 11 45 2 126 11 8 9 0 3 113 14 15 9 1 0 92 7 0 47 1 0 4 1 0 5 chain 535602 chr7 159138663 + 136866357 136872340 L1PA3long 6157 + 0 6149 3501 152 0 1 614 11 139 334 0 1 1489 1 0 2453 2 1 120 0 4 233 0 1 71 1 0 122 0 33 130 0 1 250 chain 24050 chr7 159138663 + 136878624 136878923 AluY 311 + 0 283 110040 126 16 0 157 chain 78916 chr7 159138663 + 136890310 136891206 MER11D 897 + 0 897 44099 287 2 1 20 11 13 576 chain 108156 chr7 159138663 + 136894573 136895784 L1PA4 6152 - 1 1223 34538 147 1 0 633 0 12 430 chain 116473 chr7 159138663 + 136895784 136897068 L1PA4 6152 + 3641 4926 32288 308 0 1 976 chain 31412 chr7 159138663 + 136924149 136924503 L1PA3long 6157 - 1 354 81793 4 1 0 349 chain 22842 chr7 159138663 + 136927716 136927981 AluSc 308 - 43 308 116383 265 chain 24598 chr7 159138663 + 136929133 136929418 L1PA5 6144 - 0 287 107005 11 0 4 244 2 0 28 chain 41495 chr7 159138663 + 136940966 136941518 L1PA8A 6298 - 9 563 67285 96 7 0 6 1 8 273 2 4 167 chain 19544 chr7 159138663 + 136941578 136941822 L1PA8A 6298 + 5496 5746 128534 30 0 1 14 0 3 22 0 2 178 chain 285398 chr7 159138663 + 136947745 136951389 Harlequin-int 5206 - 0 5081 14330 8 0 1 15 6 3 621 16 8 7 0 8 526 0 10 11 0 644 40 1 0 5 0 1 550 0 6 101 0 1 73 12 7 206 0 1 326 1 0 362 0 778 198 0 1 205 4 0 120 0 5 56 0 2 13 5 7 27 0 1 29 10 8 90 chain 17777 chr7 159138663 + 136959112 136959323 L1PA7 6471 - 3 213 133491 11 1 0 199 chain 2916 chr7 159138663 + 136973395 136973427 U2 167 + 0 32 226738 32 chain 26254 chr7 159138663 + 136974695 136975042 THE1B 368 - 0 361 99008 75 1 0 91 2 0 30 1 0 23 0 3 87 0 15 37 chain 8273 chr7 159138663 + 136977402 136977499 MER2 342 - 165 262 169551 97 chain 18039 chr7 159138663 + 136995463 136995696 Tigger1 2417 - 1425 1659 132764 113 0 1 93 2 0 6 0 2 19 chain 141855 chr7 159138663 + 137018404 137019949 L1PA3long 6157 + 4612 6157 25846 1545 chain 6427 chr7 159138663 + 137041014 137041163 MER66C 541 - 15 168 181811 53 53 52 20 1 6 22 chain 4059 chr7 159138663 + 137078359 137078405 MADE1 96 + 50 96 206496 46 chain 9805 chr7 159138663 + 137108621 137108762 L1PA7 6471 - 6 150 161573 31 9 0 7 2 14 92 chain 556933 chr7 159138663 + 137109150 137115310 L1PA3long 6157 + 5 6157 614 642 1 0 67 8 1 5442 chain 14994 chr7 159138663 + 137124095 137124391 THE1B 368 - 61 368 141337 63 22 20 6 0 4 12 0 1 28 6 5 51 10 12 14 37 44 47 chain 12211 chr7 159138663 + 137189743 137189897 L1PA6 6164 + 5876 6031 151378 99 0 1 55 chain 15405 chr7 159138663 + 137198331 137198536 Tigger3a 397 - 48 257 140186 43 1 0 124 1 5 15 0 1 21 chain 29136 chr7 159138663 + 137243808 137244116 AluYa5 310 - 2 310 88384 308 chain 27830 chr7 159138663 + 137325697 137326066 THE1B 368 + 0 368 93586 172 2 1 169 3 0 5 1 4 17 chain 23092 chr7 159138663 + 137347036 137347288 AluYa5 310 - 58 310 115188 252 chain 26858 chr7 159138663 + 137378785 137379083 AluYf4 310 + 0 298 96778 298 chain 26861 chr7 159138663 + 137404996 137405303 AluYk4 311 - 5 311 96768 174 1 0 132 chain 39293 chr7 159138663 + 137437166 137437626 LTR2 463 + 0 463 70339 129 0 3 331 chain 25802 chr7 159138663 + 137444077 137444377 AluSq10 312 - 7 302 100862 15 5 0 280 chain 81820 chr7 159138663 + 137454183 137455189 L1PA8 5853 + 4805 5815 42834 108 1 2 169 0 2 438 0 7 33 1 0 44 2 0 69 1 0 16 1 0 8 0 1 38 2 1 19 1 0 55 chain 28702 chr7 159138663 + 137455280 137455578 AluYa5 310 - 12 310 90323 298 chain 25368 chr7 159138663 + 137553553 137553858 AluY 311 + 4 309 102836 305 chain 10967 chr7 159138663 + 137566039 137566237 Tigger4a 237 + 21 237 156333 32 1 0 4 13 14 25 7 14 66 5 16 45 chain 21701 chr7 159138663 + 137591363 137591730 THE1B 368 + 0 368 121382 15 2 0 21 4 9 45 62 63 19 4 2 119 1 0 75 chain 48980 chr7 159138663 + 137610780 137611391 L1PA8 5853 + 5147 5777 59766 417 1 0 34 9 10 71 1 0 11 1 0 43 1 23 4 1 0 17 chain 11000 chr7 159138663 + 137640503 137640637 MER85 139 + 5 139 156204 134 chain 36305 chr7 159138663 + 137652961 137653403 L1PA6 6164 - 2 444 74496 442 chain 2956 chr7 159138663 + 137656630 137656661 MER41A 554 + 399 430 225964 31 chain 7532 chr7 159138663 + 137657828 137657932 L1HS 6032 + 5929 6032 173958 32 0 4 49 3 0 7 2 0 11 chain 34359 chr7 159138663 + 137701407 137701925 MER1A 529 - 5 529 77117 57 2 0 5 9 10 68 0 1 294 34 34 22 11 17 16 chain 5155 chr7 159138663 + 137703815 137704277 HUERS-P1-int 2401 + 1823 2137 193503 13 1 0 8 2 0 6 7 0 13 350 214 47 2 0 13 chain 27345 chr7 159138663 + 137719887 137720212 THE1A-int 1579 - 0 325 95127 325 chain 15963 chr7 159138663 + 137722992 137723306 MER4-int 2692 + 656 970 138479 9 4 0 52 13 15 76 0 1 34 55 57 18 0 1 20 2 0 31 chain 313701 chr7 159138663 + 137723364 137726962 L1PA6 6164 + 2563 6162 12868 2751 0 1 6 1 2 156 1 2 273 0 1 399 3 0 8 chain 59758 chr7 159138663 + 137736201 137736919 LTR12 884 - 0 884 52956 157 0 103 224 0 22 40 0 1 230 1 42 41 1 0 24 chain 162106 chr7 159138663 + 137740330 137742167 L1PA5 6144 - 12 1851 23048 1239 9 9 535 0 2 54 chain 28299 chr7 159138663 + 137761906 137762283 THE1C 375 - 0 375 91951 27 1 0 12 2 0 146 4 5 185 chain 22869 chr7 159138663 + 137799132 137799428 AluSp 311 + 0 304 116231 23 3 12 97 1 0 172 chain 26418 chr7 159138663 + 137802483 137802789 AluYk4 311 + 0 306 98346 306 chain 3263 chr7 159138663 + 137804365 137804444 MLT1C 463 + 0 77 219730 22 30 28 27 chain 15934 chr7 159138663 + 137830457 137830701 MER1A 529 - 0 223 138569 62 0 1 6 19 0 6 6 0 52 0 3 93 chain 121141 chr7 159138663 + 137830727 137832174 LTR12C 1709 + 0 1698 30655 92 1 0 246 0 43 310 0 159 221 0 47 106 0 4 385 13 12 73 chain 23943 chr7 159138663 + 137840129 137840380 AluYa5 310 + 54 305 110664 251 chain 5785 chr7 159138663 + 137859807 137859875 HY3 101 + 27 95 187322 68 chain 20736 chr7 159138663 + 137869341 137869610 AluY 311 + 15 296 124829 23 0 12 82 0 1 6 4 5 105 2 0 47 chain 13756 chr7 159138663 + 137875084 137876409 PRIMA4_LTR 623 - 262 623 145419 16 1 2 26 1065 77 29 10 33 18 8 10 4 1 0 121 8 7 18 chain 23977 chr7 159138663 + 137891042 137891315 L1PA5 6144 - 0 274 110465 154 0 1 119 chain 6539 chr7 159138663 + 137893578 137893701 THE1D 372 - 0 121 180930 23 20 17 18 7 8 55 chain 127227 chr7 159138663 + 137899974 137901999 MER57-int 2662 - 334 2080 28761 156 0 1 4 2 1 190 0 4 64 3 0 26 0 1 25 6 8 12 0 7 5 1 0 4 0 1 15 9 0 76 1 4 140 4 6 14 299 0 117 5 6 6 1 0 31 1 0 11 0 5 177 1 0 4 0 1 109 4 0 137 0 16 117 14 12 219 1 0 14 chain 113208 chr7 159138663 + 137904684 137906142 THE1B-int 1605 + 114 1605 33313 318 4 29 522 1 2 107 14 13 341 2 10 149 chain 26371 chr7 159138663 + 137917884 137918274 LTR3A 482 - 102 482 98530 109 51 43 118 0 1 84 1 0 13 2 0 12 chain 8715 chr7 159138663 + 137922279 137922466 L1PB1 5432 - 28 195 167113 13 8 7 14 1 0 24 2 0 14 8 5 19 14 5 7 3 0 16 1 0 43 chain 454675 chr7 159138663 + 137934182 137940121 HERVL-int 5654 + 0 5654 8592 153 0 11 46 3 0 445 2 0 284 2 1 36 0 8 472 1 0 239 0 7 22 0 2 68 43 6 36 324 0 26 8 12 152 5 4 447 0 1 156 2 3 120 0 10 309 0 5 728 1 2 624 2 6 395 8 14 52 0 23 217 2 0 60 0 1 23 0 1 52 0 1 374 chain 7811 chr7 159138663 + 137941351 137941442 MER61E 571 - 57 148 172246 91 chain 85619 chr7 159138663 + 137957751 137959325 L1PB1 5432 + 4220 5430 41297 150 8 0 89 305 6 40 1 4 117 3 0 474 11 0 16 13 0 22 1 0 8 1 0 11 5 1 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 18 7 19 17 14 5 2 0 26 1 0 19 1 0 13 1 0 16 2 0 10 chain 5869 chr7 159138663 + 137975229 137975299 Tigger1 2417 - 96 166 186498 70 chain 13599 chr7 159138663 + 137979640 137979923 THE1C 375 + 0 298 145980 78 44 46 60 0 3 6 49 59 46 chain 3749 chr7 159138663 + 137982763 137982808 MADE1 96 - 50 96 211150 10 0 1 35 chain 4472 chr7 159138663 + 137993981 137994038 MSTC 436 - 51 108 201092 57 chain 14246 chr7 159138663 + 137995732 137995943 MER61E 571 - 7 218 143739 34 1 0 7 2 3 4 1 0 98 2 3 62 chain 16032 chr7 159138663 + 137997061 137997269 MER4E1 777 - 566 777 138276 75 0 2 55 0 2 54 1 0 23 chain 158335 chr7 159138663 + 138002249 138005618 L1PA8 5853 + 3795 5849 23553 301 1 0 105 1 5 164 1 0 139 0 1 314 1317 0 178 5 7 73 0 2 232 0 1 161 18 18 68 1 0 46 2 0 68 2 1 61 2 1 19 1 0 89 chain 116041 chr7 159138663 + 138003288 138004586 L1PA4 6152 + 4839 6138 32441 978 0 1 74 1 0 173 0 1 72 chain 1253 chr7 159138663 + 138013792 138013999 Tigger2 2703 + 550 758 75291 175 1 2 31 chain 28540 chr7 159138663 + 138013999 138014430 LTR7B 505 + 0 505 90996 108 0 10 66 35 11 17 0 88 62 1 0 79 14 13 40 0 2 9 chain 200922 chr7 159138663 + 138014953 138017641 HERVH-int 3825 + 769 3819 19151 11 2 0 7 3 8 194 43 40 45 0 1 96 1 4 48 15 0 72 1 3 132 9 0 87 0 1 436 0 4 128 4 9 313 0 1 5 5 4 401 0 367 167 17 18 312 1 3 133 chain 30576 chr7 159138663 + 138018844 138019262 LTR7B 505 + 0 491 83248 108 0 10 57 0 38 12 3 27 28 0 2 41 0 1 41 1 0 76 14 13 37 chain 2210 chr7 159138663 + 138019322 138019687 Tigger2 2703 + 800 1166 75291 22 1 0 18 0 1 217 0 1 107 chain 28955 chr7 159138663 + 138023958 138024282 LTR14A 344 + 16 344 89202 252 0 4 72 chain 130455 chr7 159138663 + 138024493 138026166 HERVK14-int 1672 + 9 1658 27976 21 1 0 11 1 0 49 1 0 156 6 0 59 1 0 29 2 0 232 2 1 46 1 0 206 1 0 163 1 0 79 1 0 3 1 0 9 4 2 30 1 0 203 1 0 76 1 0 4 7 8 20 1 0 62 10 9 23 2 0 9 1 0 101 0 3 35 chain 29237 chr7 159138663 + 138030264 138030604 LTR14A 344 + 0 344 87871 268 0 4 72 chain 7197 chr7 159138663 + 138044258 138044340 MER41B 635 + 463 545 176086 82 chain 50488 chr7 159138663 + 138048409 138049224 MER57-int 2662 - 0 808 58657 5 2 0 32 3 0 14 21 30 22 4 1 10 1 0 5 1 0 15 39 24 68 18 12 89 0 7 54 3 4 172 7 14 98 2 0 77 5 6 4 0 1 44 chain 8929 chr7 159138663 + 138049452 138049588 HERVH-int 3825 + 1730 1865 165992 57 14 13 65 chain 70374 chr7 159138663 + 138049589 138050487 HERVH-int 3825 + 1867 2796 48226 219 4 9 313 0 1 5 5 4 130 7 32 149 0 1 66 chain 78729 chr7 159138663 + 138050499 138051518 HERVH-int 3825 + 2797 3825 44176 65 2 0 154 14 14 56 0 3 25 0 8 124 2 1 179 13 10 9 1 4 334 0 1 41 chain 28538 chr7 159138663 + 138052611 138053030 LTR7B 505 + 0 491 91007 108 0 10 66 35 11 17 0 88 62 1 0 79 14 13 37 chain 62030 chr7 159138663 + 138063056 138063753 SVA_B 1603 - 0 779 51886 6 2 0 643 0 84 46 chain 12876 chr7 159138663 + 138064305 138064628 MLT1A1 405 - 12 333 148724 60 1 0 88 145 144 29 chain 21531 chr7 159138663 + 138073519 138073962 LTR8A 794 - 301 794 122043 23 4 0 7 1 5 127 1 0 18 0 22 8 0 2 72 42 61 49 63 70 10 1 2 17 chain 10414 chr7 159138663 + 138076731 138076860 AluSc 308 + 10 145 158621 20 0 6 109 chain 18849 chr7 159138663 + 138077294 138077719 L1MA6 2487 + 2045 2400 130517 19 8 5 156 27 12 40 111 62 40 3 0 21 chain 16566 chr7 159138663 + 138078717 138078985 MSTA 426 + 133 426 136742 70 17 20 17 6 0 21 1 2 33 1 21 7 0 6 11 0 1 84 chain 20203 chr7 159138663 + 138079112 138079343 AluSx 319 + 5 236 126521 231 chain 41052 chr7 159138663 + 138087909 138088433 LTR10F 562 + 0 562 67829 181 1 4 43 5 8 7 0 34 198 2 0 87 chain 11169 chr7 159138663 + 138098575 138098747 MER30B 195 - 11 190 155558 4 0 1 64 0 6 14 8 0 7 7 15 68 chain 9776 chr7 159138663 + 138099295 138099443 MLT1C 463 - 304 463 161717 35 4 15 7 0 2 78 3 1 21 chain 6190 chr7 159138663 + 138100224 138100313 HY4 93 + 0 90 183650 61 6 7 22 chain 30113 chr7 159138663 + 138103000 138103358 L1PA5 6144 - 0 358 84446 358 chain 45495 chr7 159138663 + 138116048 138116619 MER61E 571 - 0 571 62504 39 0 1 401 1 0 130 chain 39789 chr7 159138663 + 138120119 138120620 LTR10F 562 - 0 562 69642 56 4 10 267 1 54 135 0 2 38 chain 36055 chr7 159138663 + 138123901 138124382 LTR10F 562 - 0 556 74829 324 28 0 9 0 15 14 1 85 69 0 4 36 chain 163528 chr7 159138663 + 138129171 138132312 HERVIP10F-int 4088 - 804 3837 22871 7 1 0 15 25 21 16 9 5 18 1 0 4 93 79 16 3 0 3 1 0 7 46 27 60 24 21 129 0 1 240 0 84 73 4 3 130 1 0 18 1 0 73 1 0 84 2 1 62 4 3 14 6 5 376 0 1 24 25 21 28 5 4 62 1 0 19 7 5 63 1 0 29 1 0 24 7 5 12 1 0 14 21 14 6 1 0 9 13 9 131 1 0 56 1 0 22 7 4 24 21 16 13 1 0 8 6 5 6 2 0 41 1 0 30 1 0 7 4 1 5 1 0 20 1 0 4 14 6 5 1 0 7 2 1 20 1 0 11 1 0 22 25 23 45 1 0 7 1 0 33 10 7 44 1 0 5 10 8 23 1 0 8 1 0 14 8 7 8 0 2 13 1 0 10 12 9 8 1 0 34 1 0 29 1 0 19 40 45 16 1 0 13 1 0 10 1 0 7 26 15 29 2 0 7 123 79 11 1 0 13 3 1 7 3 0 15 chain 18908 chr7 159138663 + 138134609 138134855 LTR10F 562 - 0 245 130341 154 5 4 87 chain 431968 chr7 159138663 + 138170103 138175203 L1PA6 6164 - 2 5115 9270 258 0 12 194 0 2 297 0 1 83 1 0 18 3 7 647 1 0 572 11 5 387 12 13 109 0 1 339 4 1 26 0 1 4 2 1 851 1 3 376 1 0 131 0 2 59 4 0 452 0 1 216 0 3 41 chain 14434 chr7 159138663 + 138195809 138195979 MSTA 426 - 15 185 143094 170 chain 538819 chr7 159138663 + 138215877 138222101 L1PA5 6144 - 6 6144 3022 45 97 4 741 0 3 519 1 4 720 3 0 153 0 2 726 0 4 21 1 0 17 4 3 668 1 0 1784 0 1 723 chain 3060 chr7 159138663 + 138230505 138230572 L1MC4 1079 + 157 225 223811 32 22 23 13 chain 9045 chr7 159138663 + 138275370 138275506 L1P3 4156 + 4007 4139 165343 49 7 6 43 2 0 8 1 0 26 chain 5535 chr7 159138663 + 138285424 138285545 L1MA9 1812 + 1359 1472 189714 29 1 0 27 14 10 30 9 6 11 chain 55258 chr7 159138663 + 138296551 138297160 SVA_F 1814 + 320 1814 55549 71 0 885 538 chain 18848 chr7 159138663 + 138319731 138320030 AluSp 311 + 0 297 130519 46 0 2 5 10 4 68 38 38 112 0 2 20 chain 14724 chr7 159138663 + 138325321 138325560 L1PA16 3655 + 3402 3619 142185 176 3 0 15 29 10 16 chain 23513 chr7 159138663 + 138328683 138328971 AluSc 308 + 17 308 113053 114 0 1 142 1 3 31 chain 17985 chr7 159138663 + 138333196 138333434 AluYc 301 + 32 253 132903 90 24 7 124 chain 5147 chr7 159138663 + 138339178 138339240 Tigger1 2417 + 1195 1257 193582 62 chain 55847 chr7 159138663 + 138362063 138363160 MER4E1 777 + 0 777 55218 104 0 1 27 4 10 20 0 3 6 6 4 252 328 0 106 34 19 78 11 26 121 chain 6900 chr7 159138663 + 138451612 138451699 Charlie1 1172 + 740 827 178195 87 chain 3981 chr7 159138663 + 138463125 138463172 Tigger4b 360 + 224 271 207673 47 chain 10750 chr7 159138663 + 138465266 138465440 ERVL-B4-int 2334 - 1038 1209 157200 130 30 27 14 chain 21764 chr7 159138663 + 138473364 138473707 THE1B 368 + 2 349 121158 167 1 0 21 7 10 9 1 5 16 1 0 10 1 0 66 1 0 4 20 21 18 chain 87384 chr7 159138663 + 138495984 138496961 L1PA4 6152 - 9 991 40616 412 0 1 428 0 4 137 chain 37940 chr7 159138663 + 138510953 138511458 Tigger1 2417 + 967 1477 72224 18 0 1 15 0 1 37 6 0 57 0 1 142 0 1 152 3 6 63 0 4 12 chain 21323 chr7 159138663 + 138543501 138543754 AluY 311 + 30 285 122784 64 0 1 37 0 1 152 chain 3741 chr7 159138663 + 138570403 138570460 MER4D 903 + 828 885 211312 18 1 2 23 1 0 14 chain 13824 chr7 159138663 + 138591272 138591537 L1PB1 5432 + 5175 5420 145165 45 2 1 16 1 0 44 1 0 15 1 0 4 15 7 20 8 5 14 2 0 23 1 0 22 7 6 7 1 0 16 chain 12226 chr7 159138663 + 138613363 138613525 Tigger1 2417 - 17 176 151317 144 3 0 15 chain 10146 chr7 159138663 + 138613542 138613656 L1PA5 6144 + 6025 6139 159868 114 chain 93241 chr7 159138663 + 138624771 138625809 L1PA4 6152 - 9 1048 38586 104 1 2 933 chain 3089 chr7 159138663 + 138664197 138664231 MIRb 242 + 104 138 223096 34 chain 3366 chr7 159138663 + 138685827 138685866 L1MC4 1079 + 159 198 217739 39 chain 43823 chr7 159138663 + 138685933 138686484 MER41A 554 + 0 554 64420 284 0 4 16 2 0 134 5 1 29 1 6 80 chain 173541 chr7 159138663 + 138687963 138690475 MER41-int 2638 + 112 2632 21644 42 108 106 30 62 57 7 0 1 96 4 0 10 2 0 147 0 1 38 1 0 5 16 5 21 1 0 121 9 24 129 0 2 92 29 30 222 0 2 26 0 1 19 0 1 9 1 0 159 0 2 251 1 0 108 2 0 35 4 2 13 10 14 25 0 1 358 0 9 299 chain 43889 chr7 159138663 + 138690502 138691952 MER41A 554 + 13 551 64344 177 916 0 218 0 4 139 chain 17464 chr7 159138663 + 138690809 138691032 MER41A 554 + 319 541 134348 78 2 0 56 0 1 87 chain 4890 chr7 159138663 + 138691034 138691088 MER41-int 2638 + 2582 2636 196379 54 chain 13758 chr7 159138663 + 138691428 138691591 MER41A 554 + 22 185 145411 163 chain 40405 chr7 159138663 + 138694522 138695020 MER41A 554 - 12 554 68728 69 0 5 99 0 43 128 4 0 198 chain 52252 chr7 159138663 + 138696353 138698177 MER4E1 777 + 0 771 57463 13 18 19 59 372 0 240 0 1 14 56 1 57 305 0 134 35 23 19 326 0 48 13 28 115 chain 28727 chr7 159138663 + 138696461 138696815 THE1A 353 - 0 353 90221 151 1 0 202 chain 9571 chr7 159138663 + 138753113 138753240 MER34 540 - 383 514 162732 38 5 9 84 chain 18963 chr7 159138663 + 138771365 138771706 THE1C 375 + 0 347 130198 121 6 23 9 16 0 26 0 3 11 59 60 22 0 1 71 chain 49288 chr7 159138663 + 138776612 138777171 LTR6B 557 - 0 557 59521 102 5 4 56 1 0 395 chain 29349 chr7 159138663 + 138778164 138778558 LTR7 482 + 0 477 87300 101 15 14 17 0 51 41 5 37 46 0 1 169 chain 105964 chr7 159138663 + 138785546 138786765 SVA_C 1631 + 1 1626 35264 17 11 3 13 3 1 589 0 413 196 0 3 390 chain 176489 chr7 159138663 + 138813593 138815578 L1PA5 6144 + 4185 6144 21304 156 0 4 1032 1 0 552 29 0 215 chain 5125 chr7 159138663 + 138844405 138844550 Charlie1b 519 + 223 366 193834 31 1 0 34 55 56 12 2 0 10 chain 32420 chr7 159138663 + 138859204 138861053 L1MA3 4352 + 3167 4306 80167 74 2 1 59 0 1 14 0 8 22 950 568 79 1 9 24 3 0 67 365 34 40 7 5 63 4 0 23 2 0 20 6 5 5 1 0 18 chain 29659 chr7 159138663 + 138871558 138871869 AluYb8 318 + 0 311 86028 311 chain 48718 chr7 159138663 + 138878464 138879285 L1PB1 5432 + 4649 5400 59938 56 0 2 194 0 3 199 59 11 20 1 0 9 21 16 8 2 0 52 1 0 18 3 1 4 0 1 21 1 0 16 1 0 16 3 0 6 57 47 21 1 0 21 1 0 9 chain 25959 chr7 159138663 + 138882355 138882658 AluSp 311 + 2 304 100176 11 0 1 111 2 0 179 chain 134828 chr7 159138663 + 138890313 138892200 L1MA3 4352 + 1460 3363 27051 68 1 0 125 4 0 6 0 3 120 0 1 197 26 27 36 2 0 5 16 15 79 2 3 168 1 0 39 2 0 17 16 44 104 6 1 66 3 0 152 9 10 495 2 1 59 0 1 61 chain 328356 chr7 159138663 + 138898116 138901705 L1PA3long 6157 - 15 3600 12264 2971 7 3 611 chain 148005 chr7 159138663 + 138909642 138911725 SVA_A 1864 + 26 1864 24878 15 0 6 413 4 3 71 0 3 40 1 3 36 2 0 34 3 0 22 37 0 13 40 0 63 70 0 16 105 0 68 10 8 46 1 0 27 0 1 10 6 9 128 2 0 56 34 1 27 0 36 683 chain 2076 chr7 159138663 + 138910283 138910320 SVA_A 1864 + 559 598 55513 18 0 2 19 chain 2244 chr7 159138663 + 138910333 138910373 SVA_A 1864 + 611 648 55513 1 4 1 35 chain 3730 chr7 159138663 + 138910436 138910506 SVA_A 1864 + 1008 1119 93264 45 5 6 13 6 46 1 chain 3290 chr7 159138663 + 138910522 138910577 SVA_A 1864 + 987 1042 56074 55 chain 1867 chr7 159138663 + 138910981 138911015 SVA_A 1864 + 1227 1265 68076 10 5 6 13 1 4 5 chain 16259 chr7 159138663 + 138994391 138994594 AluSp 311 + 57 259 137581 58 1 0 144 chain 24276 chr7 159138663 + 139011788 139012067 AluSp 311 - 21 300 108800 279 chain 19488 chr7 159138663 + 139012854 139013217 THE1D 372 - 0 372 128693 125 69 78 8 0 1 32 28 27 101 chain 11298 chr7 159138663 + 139016379 139016506 AluSc8 310 + 0 127 155065 127 chain 25358 chr7 159138663 + 139018190 139018507 AluSg 306 + 1 306 102897 21 15 0 201 0 1 50 0 2 30 chain 6066 chr7 159138663 + 139025445 139025509 tRNA-Arg-AGG 67 + 0 64 184700 64 chain 16461 chr7 159138663 + 139029012 139029326 MER2 342 - 22 336 137036 25 12 0 57 1 0 31 1 3 11 0 4 72 61 68 43 chain 29680 chr7 159138663 + 139109631 139109953 AluYb8 318 - 0 318 85902 195 4 0 123 chain 52233 chr7 159138663 + 139114124 139114720 SVA_D 2077 - 0 639 57476 99 0 4 290 1 4 53 2 1 84 0 37 67 chain 43053 chr7 159138663 + 139125856 139126369 L1PA6 6164 + 5641 6162 65351 95 0 2 154 0 1 163 0 5 101 chain 41236 chr7 159138663 + 139128242 139129054 MLT2A2 560 - 1 555 67602 34 283 19 15 0 3 303 0 2 124 0 1 53 chain 11584 chr7 159138663 + 139137064 139137199 L1PA7 6471 + 6328 6463 153952 135 chain 227195 chr7 159138663 + 139146609 139149880 HERVH-int 3825 + 0 3825 17475 21 6 10 37 0 16 197 0 2 33 29 28 20 1 2 103 1 0 4 0 5 11 2 1 28 13 12 15 24 32 11 8 0 9 3 152 7 0 3 19 1 0 444 3 0 5 0 3 5 22 7 133 0 1 35 0 10 10 9 0 78 0 1 35 5 1 235 56 41 264 4 9 15 5 3 186 1 2 284 1 9 225 0 367 57 18 17 66 3 1 5 0 2 19 9 9 64 23 23 5 0 1 4 1 0 214 11 43 109 chain 25405 chr7 159138663 + 139150158 139150452 AluY 311 + 2 297 102658 130 0 1 164 chain 79643 chr7 159138663 + 139152150 139153119 LTR5_Hs 974 + 0 974 43761 285 0 1 132 1 0 401 15 22 30 2 0 103 chain 20518 chr7 159138663 + 139153124 139153392 LTR7 482 + 164 475 125574 48 10 52 41 0 1 169 chain 26297 chr7 159138663 + 139162509 139162792 AluYk11 308 - 14 297 98844 283 chain 10053 chr7 159138663 + 139185782 139186242 L1PA16 3655 + 3427 3578 160311 66 4 0 10 312 7 68 chain 24964 chr7 159138663 + 139187717 139188012 AluSg7 307 + 9 307 104989 29 0 2 86 0 1 180 chain 6727 chr7 159138663 + 139189544 139189648 MER20 218 + 59 161 179496 23 11 9 70 chain 131313 chr7 159138663 + 139204129 139205837 SVA_D 2077 - 7 2077 27798 417 140 0 189 0 1 42 0 49 44 0 477 124 5 8 29 2 0 37 0 2 69 48 12 515 0 18 22 10 0 15 chain 4399 chr7 159138663 + 139205227 139205275 SVA_D 2077 - 1535 1583 148929 48 chain 28898 chr7 159138663 + 139207161 139207466 AluYa5 310 + 0 304 89462 132 1 0 172 chain 118209 chr7 159138663 + 139238247 139239807 THE1B-int 1605 + 0 1605 31725 103 0 1 326 1 26 219 0 3 10 4 9 65 32 33 52 9 10 94 1 4 8 8 0 287 0 13 272 6 5 8 0 1 43 0 1 12 chain 25297 chr7 159138663 + 139239807 139240178 THE1B 368 + 0 356 103244 13 2 0 22 5 10 127 3 2 141 19 2 39 chain 13033 chr7 159138663 + 139362324 139362480 L1PA7 6471 - 4 158 148111 8 2 0 146 chain 73668 chr7 159138663 + 139370208 139371146 Tigger1 2417 + 965 1907 46700 334 1 0 73 0 3 8 0 1 360 0 1 162 chain 27693 chr7 159138663 + 139371146 139371518 THE1C 375 + 0 375 94065 130 5 9 41 7 6 189 chain 28005 chr7 159138663 + 139424332 139424635 L1PA3long 6157 - 0 303 92985 303 chain 29948 chr7 159138663 + 139432660 139433084 MSTA 426 + 0 426 84973 37 0 5 61 0 1 25 4 3 14 23 22 40 2 0 218 chain 5246 chr7 159138663 + 139443697 139443871 L1MB7 1623 + 995 1179 192560 42 1 0 4 92 103 35 chain 3992 chr7 159138663 + 139479828 139479907 MIRb 242 + 33 113 207497 35 22 23 22 chain 5473 chr7 159138663 + 139480104 139480191 MER3 215 + 90 209 190275 51 10 42 26 chain 112631 chr7 159138663 + 139494313 139495525 L1PA2 6032 - 1 1213 33490 1212 chain 7671 chr7 159138663 + 139516363 139516470 MER5A 189 + 5 113 173094 19 1 2 87 chain 357783 chr7 159138663 + 139532029 139537603 L1PB1 5432 + 569 5424 11406 43 2 1 4 0 1 63 0 5 76 0 1 501 0 1 128 53 27 181 0 5 45 10 5 60 316 0 105 1 2 367 3 0 303 13 3 5 0 2 290 0 1 48 1 0 30 0 1 177 331 16 148 6 12 384 1 3 110 51 12 24 8 7 4 0 1 377 0 1 21 0 2 195 2 3 165 0 2 84 0 1 81 0 2 228 4 0 113 0 1 5 1 0 51 7 6 5 1 0 24 1 0 4 21 16 9 2 0 52 3 2 16 1 0 44 1 0 15 25 13 12 30 25 24 1 0 21 1 0 13 2 1 15 1 0 4 chain 4602 chr7 159138663 + 139537883 139537941 L1PB 1623 + 1135 1195 199589 53 0 2 5 chain 190758 chr7 159138663 + 139602767 139605535 L1PB1 5432 - 14 2577 19976 14 1 0 13 1 0 21 1 0 24 2 0 14 8 5 4 0 1 14 23 8 4 1 0 16 1 0 43 1 0 16 2 1 50 27 21 4 1 0 12 1 0 17 7 0 7 1 6 51 1 0 5 0 1 31 2 3 197 15 8 186 3 0 319 0 5 21 0 1 47 0 1 496 1 3 130 1 0 50 14 18 38 3 0 5 170 1 631 chain 38308 chr7 159138663 + 139628930 139629423 LTR10F 562 - 0 562 71699 253 36 18 29 0 87 175 chain 22018 chr7 159138663 + 139631239 139631595 THE1B 368 - 0 368 120150 46 0 1 22 0 2 36 61 71 21 1 0 169 chain 6808 chr7 159138663 + 139645459 139645573 MLT1F2 592 - 0 116 178889 27 1 0 32 17 20 37 chain 11595 chr7 159138663 + 139653742 139653915 MER30 238 + 37 227 153912 69 4 0 11 0 23 40 0 1 13 4 1 32 chain 24068 chr7 159138663 + 139655956 139656234 AluSp 311 - 22 301 109938 7 0 1 271 chain 29504 chr7 159138663 + 139676955 139677324 THE1B 368 - 0 368 86624 192 5 4 172 chain 16140 chr7 159138663 + 139686188 139686532 L1PB1 5432 - 12 329 137934 16 1 0 13 1 0 21 1 0 24 2 0 9 16 13 27 18 6 10 1 0 34 6 10 16 2 1 50 20 14 10 2 1 7 1 0 24 1 0 11 chain 4377 chr7 159138663 + 139693023 139693075 MLT1A 405 - 282 334 202229 52 chain 16176 chr7 159138663 + 139750969 139751188 HSMAR2 1300 - 1 225 137826 27 1 2 5 0 7 5 1 0 139 2 0 39 chain 28949 chr7 159138663 + 139772817 139773169 MLT2A1 477 - 121 477 89227 33 1 0 146 5 9 27 0 1 140 chain 18876 chr7 159138663 + 139781194 139781541 MLT2A1 477 + 116 477 130436 24 1 2 29 3 0 24 10 14 148 2 4 10 60 66 30 0 4 6 chain 24774 chr7 159138663 + 139794651 139794945 AluSp 311 - 16 309 106032 167 1 0 126 chain 517545 chr7 159138663 + 139803124 139809196 L1PA5 6144 - 9 6143 5418 111 0 1 27 8 9 182 0 1 653 0 5 228 0 3 41 5 16 320 0 3 186 0 2 309 0 1 315 1 0 475 0 4 67 1 0 561 0 1 153 0 15 132 1 0 86 0 1 983 11 9 64 9 0 144 1 0 88 0 4 19 1 0 48 0 2 31 0 8 487 0 1 205 1 15 118 chain 136333 chr7 159138663 + 139813990 139815612 SVA_C 1631 + 56 1626 26777 663 43 0 242 0 4 11 13 9 22 12 11 99 1 0 501 7 0 8 chain 1984 chr7 159138663 + 139814656 139814696 SVA_C 1631 + 719 759 137169 40 chain 22517 chr7 159138663 + 139823599 139823885 AluY 311 + 0 298 117954 42 1 11 46 0 1 32 0 1 165 chain 8717 chr7 159138663 + 139829785 139829961 Tigger4a 237 + 26 237 167105 16 16 49 16 2 9 53 0 3 8 15 7 50 chain 21340 chr7 159138663 + 139842746 139842997 AluY 311 + 47 300 122719 85 0 1 42 0 1 124 chain 22640 chr7 159138663 + 139879082 139879454 MSTA 426 + 9 392 117374 170 64 74 85 6 7 47 chain 21551 chr7 159138663 + 139888638 139888928 AluY 311 + 31 311 121960 6 1 0 96 21 12 166 chain 4256 chr7 159138663 + 139893869 139893949 MER45A 178 - 47 127 203798 27 18 15 5 0 3 30 chain 44571 chr7 159138663 + 139902727 139903241 MER9a1 513 + 0 513 63507 164 2 1 348 chain 27724 chr7 159138663 + 139933989 139934282 AluYd8 298 + 0 293 93955 293 chain 32571 chr7 159138663 + 139957066 139957614 L1PB1 5432 + 4904 5420 79901 199 1 2 9 3 0 20 1 0 13 1 0 11 4 0 9 2 0 53 2 1 15 1 0 41 33 21 29 2 0 5 25 22 16 1 0 21 1 0 13 1 0 16 chain 24163 chr7 159138663 + 140008533 140008813 AluSg7 307 - 15 296 109413 159 1 2 120 chain 22132 chr7 159138663 + 140057442 140057726 AluSp 311 + 8 298 119658 50 2 1 188 1 8 43 chain 76819 chr7 159138663 + 140061322 140062213 SVA_D 2077 + 0 943 45076 14 0 4 12 1 18 11 13 0 149 2 1 669 0 45 20 chain 16961 chr7 159138663 + 140062252 140062468 SVA_F 1814 + 664 1116 135697 41 6 46 10 0 1 7 0 193 38 0 1 80 0 1 34 chain 84696 chr7 159138663 + 140062543 140063500 SVA_E 1901 + 807 1892 41640 5 1 0 5 1 0 106 0 46 5 1 0 41 5 90 116 0 1 39 1 0 631 chain 20922 chr7 159138663 + 140074671 140074983 AluSx4 309 + 6 306 124204 190 38 30 71 4 0 9 chain 29696 chr7 159138663 + 140110107 140110425 AluYb8 318 - 0 318 85846 318 chain 131501 chr7 159138663 + 140130759 140132204 SVA_D 2077 + 15 2077 27748 540 0 40 92 0 40 181 0 537 632 chain 27462 chr7 159138663 + 140134434 140134730 AluYf4 310 + 0 296 94774 296 chain 25949 chr7 159138663 + 140138187 140138490 AluY 311 + 0 298 100216 133 6 1 164 chain 24265 chr7 159138663 + 140168855 140169138 AluY 311 + 11 297 108870 121 0 1 131 0 2 31 chain 22220 chr7 159138663 + 140180904 140181198 AluY 311 + 1 297 119260 42 0 1 83 1 0 16 3 0 7 0 3 108 1 3 33 chain 4686 chr7 159138663 + 140181481 140181538 LTR49 580 - 334 391 198680 57 chain 22634 chr7 159138663 + 140193146 140193418 AluSp 311 + 6 275 117406 126 3 0 143 chain 57138 chr7 159138663 + 140229103 140229754 L1PA5 6144 + 5492 6144 54437 331 0 2 301 1 0 18 chain 24480 chr7 159138663 + 140248401 140248699 AluSp 311 - 6 300 107652 7 6 0 258 0 2 27 chain 74799 chr7 159138663 + 140252783 140253742 LTR5_Hs 974 - 0 974 46114 103 20 18 19 8 15 163 1 0 47 0 7 96 0 1 219 0 1 128 0 2 155 chain 24272 chr7 159138663 + 140262183 140262465 AluY 311 + 4 286 108832 282 chain 33006 chr7 159138663 + 140265500 140265892 MER41A 554 + 38 446 79206 60 0 16 332 chain 21228 chr7 159138663 + 140294545 140294803 AluSc 308 - 38 298 123113 35 0 1 29 0 1 194 chain 10390 chr7 159138663 + 140321144 140321278 MER2 342 - 128 260 158738 99 1 0 5 1 0 28 chain 21325 chr7 159138663 + 140347744 140347995 AluSc5 308 - 54 308 122773 181 0 3 70 chain 19413 chr7 159138663 + 140357539 140357767 AluY 311 + 13 288 128910 113 0 47 115 chain 197747 chr7 159138663 + 140362142 140364626 L1PA5 6144 - 9 2250 19375 249 0 1 828 13 5 311 241 1 387 5 9 450 chain 17623 chr7 159138663 + 140363588 140363780 L1PA5 6144 + 3894 4086 133926 192 chain 103470 chr7 159138663 + 140364640 140365893 L1P2 5180 + 2044 3253 35876 5 0 1 157 0 2 157 0 1 39 0 1 480 4 0 217 46 1 148 chain 38256 chr7 159138663 + 140365912 140366598 HERV3-int 2824 + 1987 2695 71769 14 30 25 8 1 0 26 1 0 3 1 0 15 1 0 19 1 0 50 12 8 28 1 0 132 1 0 102 1 0 65 1 0 29 53 44 29 13 10 15 10 63 13 1 0 10 chain 29976 chr7 159138663 + 140371918 140372544 LTR8 732 - 14 721 84887 82 24 67 31 16 13 14 112 113 48 11 38 24 1 3 123 0 6 11 7 0 101 6 17 7 0 1 8 chain 503675 chr7 159138663 + 140408416 140414028 L1PA4 6152 - 1 6151 6623 112 0 1 697 2 1 699 0 5 1405 0 2 58 0 1 2006 0 3 455 0 2 81 0 525 97 chain 95639 chr7 159138663 + 140442464 140443513 L1PA3long 6157 + 5088 6137 37920 1049 chain 440940 chr7 159138663 + 140460440 140466249 L1PA3long 6157 + 1243 6157 9026 467 0 1 1459 0 1 36 907 0 85 1 0 1244 0 1 8 2 1 1255 0 10 195 1 2 149 chain 79785 chr7 159138663 + 140462406 140463301 SVA_D 2077 - 0 892 43689 18 2 0 658 10 8 4 0 1 203 chain 8980 chr7 159138663 + 140478403 140478508 L1PA3long 6157 + 6053 6157 165715 87 1 0 17 chain 22394 chr7 159138663 + 140481713 140482002 L1PA6 6164 - 2 290 118515 4 1 0 136 1 0 4 1 2 142 chain 6488 chr7 159138663 + 140482376 140482449 L1PA8 5853 - 0 73 181340 73 chain 27150 chr7 159138663 + 140521373 140521792 L1PA16 3655 + 3082 3560 95762 73 7 8 41 2 1 42 5 1 30 15 23 23 1 56 180 chain 16598 chr7 159138663 + 140543852 140544045 LTR10F 562 + 319 512 136678 193 chain 28075 chr7 159138663 + 140563338 140563734 MSTA 426 + 0 407 92737 29 0 1 116 5 8 52 5 8 11 13 17 165 chain 3180 chr7 159138663 + 140582019 140582054 MADE1 96 - 61 96 221341 35 chain 7456 chr7 159138663 + 140602615 140602720 Tigger1 2417 + 659 1083 174419 59 1 0 4 0 320 41 chain 4640 chr7 159138663 + 140627160 140627211 MLT1G 592 - 118 169 199190 51 chain 24516 chr7 159138663 + 140653231 140653520 AluSp 311 + 0 288 107465 24 1 0 264 chain 128583 chr7 159138663 + 140655768 140657307 LTR12C 1709 - 0 1709 28425 84 1 0 397 0 4 106 8 165 116 1 0 535 1 2 8 4 13 11 1 2 192 0 1 9 1 0 64 chain 23894 chr7 159138663 + 140663647 140663935 AluSc 308 - 14 302 110932 288 chain 8127 chr7 159138663 + 140686052 140686171 MER1A 529 + 409 529 170350 45 17 18 57 chain 23390 chr7 159138663 + 140700544 140700842 AluSx1 309 + 10 292 113701 119 4 0 156 12 0 7 chain 11780 chr7 159138663 + 140719966 140720113 L1MB2 1706 + 1422 1569 153130 147 chain 34750 chr7 159138663 + 140721705 140722173 L1PB1 5432 - 1230 1693 76545 33 1 0 84 19 13 79 1 2 28 0 1 223 chain 542126 chr7 159138663 + 140732406 140738409 L1PA2 6032 + 3 6032 2481 254 1 0 62 1 8 199 4 0 190 0 1 2086 0 1 477 0 19 926 0 4 313 1 0 1323 1 6 6 5 0 154 chain 3721 chr7 159138663 + 140758931 140758971 L1PA3long 6157 + 6117 6157 211633 40 chain 4027 chr7 159138663 + 140760638 140760689 MLT1C 463 + 36 87 206966 51 chain 564843 chr7 159138663 + 140761814 140767842 L1HS 6032 - 0 6032 213 2892 0 3 317 0 1 2819 chain 57317 chr7 159138663 + 140789179 140789818 L1PA5 6144 + 5503 6143 54328 493 0 1 146 chain 14145 chr7 159138663 + 140797032 140797188 AluYk4 311 + 145 304 144053 67 0 3 89 chain 19566 chr7 159138663 + 140805034 140805311 AluSz 310 + 8 287 128471 34 0 1 95 28 29 120 chain 119579 chr7 159138663 + 140816319 140817750 L1PA7 6471 - 1 1440 31188 12 1 2 135 0 6 6 7 1 294 6 8 5 1 0 69 0 1 302 0 6 274 1 0 318 chain 53660 chr7 159138663 + 140829424 140830194 MER4E1 777 - 7 764 56577 17 0 1 5 1 0 182 34 26 15 0 10 108 7 0 53 12 0 209 1 3 22 9 11 95 chain 19940 chr7 159138663 + 140834640 140834921 THE1B 368 + 0 283 127328 13 2 0 26 4 9 124 3 2 109 chain 362192 chr7 159138663 + 140873761 140878074 L1PA7 6471 - 6 4336 11316 6 4 0 139 4 0 266 0 1 1375 0 4 52 0 1 945 7 8 64 0 1 29 0 4 14 4 8 51 1 0 250 16 22 517 0 3 72 0 1 370 0 1 8 1 0 118 chain 109509 chr7 159138663 + 140886743 140887938 L1PA4 6152 - 1 1196 34314 1195 chain 3957 chr7 159138663 + 140888062 140888149 Tigger4a 237 + 2 107 208027 18 0 14 9 15 0 13 4 23 28 chain 14742 chr7 159138663 + 140889928 140890111 MER47A 366 - 39 222 142135 183 chain 17512 chr7 159138663 + 140893723 140893951 THE1A 353 - 126 353 134234 117 4 3 107 chain 126321 chr7 159138663 + 140893951 140895510 THE1A-int 1579 - 0 1579 29001 81 0 5 117 1 2 54 0 2 299 0 1 248 22 33 737 chain 27869 chr7 159138663 + 140895510 140895864 THE1A 353 - 0 353 93460 243 5 4 106 chain 22331 chr7 159138663 + 140954245 140954524 AluSq10 312 + 10 287 118774 200 8 5 67 0 1 4 chain 30840 chr7 159138663 + 140976130 140976509 THE1C 375 - 0 375 82785 25 1 0 160 1 0 8 0 1 61 3 0 120 chain 46522 chr7 159138663 + 140985363 140985897 L1PA7 6471 + 5929 6464 61577 125 0 1 81 0 1 315 1 0 12 chain 92138 chr7 159138663 + 140997174 140998197 L1PA5 6144 - 16 1039 38921 1023 chain 35791 chr7 159138663 + 141009701 141010207 L1PA8A 6298 + 5146 5664 75146 130 10 9 184 0 4 16 12 15 63 0 2 8 5 9 78 chain 13874 chr7 159138663 + 141010222 141010416 L1PA8 5853 - 0 190 144994 93 1 0 19 2 1 50 4 3 8 1 0 16 chain 8369 chr7 159138663 + 141012786 141012887 MER41B 635 - 534 635 169030 101 chain 5223 chr7 159138663 + 141036985 141037079 HAL1-2a_MD 234 + 60 231 192807 18 0 100 30 23 0 23 chain 17448 chr7 159138663 + 141059551 141059908 THE1B 368 - 0 368 134381 39 24 23 49 80 90 44 17 19 104 chain 3134 chr7 159138663 + 141076492 141076531 MADE1 96 + 55 94 222286 39 chain 138216 chr7 159138663 + 141083019 141084570 L1PA5 6144 - 1 1553 26449 10 3 1 514 0 1 699 0 3 293 1 0 31 chain 7066 chr7 159138663 + 141106901 141106997 MER58A 224 + 115 216 176973 4 1 0 24 0 6 67 chain 3842 chr7 159138663 + 141107342 141107384 5S 121 + 0 42 209749 42 chain 29169 chr7 159138663 + 141113876 141114183 AluYk11 308 - 1 308 88206 307 chain 25467 chr7 159138663 + 141196225 141196493 AluYa5 310 + 37 305 102367 268 chain 23679 chr7 159138663 + 141206151 141206452 THE1A 353 - 52 353 112159 41 0 1 139 2 1 119 chain 127770 chr7 159138663 + 141206461 141208336 THE1A-int 1579 - 9 1579 28627 8 1 0 246 1 0 447 0 6 16 303 0 244 0 2 307 11 3 61 0 1 90 1 0 139 chain 27282 chr7 159138663 + 141208336 141208686 THE1A 353 - 0 353 95332 40 12 13 4 0 1 268 0 1 26 chain 12871 chr7 159138663 + 141213637 141213957 MER57D 437 - 0 437 148750 97 71 74 18 8 36 29 43 129 54 chain 35162 chr7 159138663 + 141255674 141256457 MER4A1 472 - 0 472 75968 196 2 1 184 308 0 39 6 5 38 1 0 9 chain 9705 chr7 159138663 + 141257707 141257936 L1MB2 1706 - 41 260 162057 54 1 0 13 1 0 16 42 28 19 34 37 42 0 3 7 chain 33432 chr7 159138663 + 141260945 141261447 L1PB2 3958 - 120 609 78512 63 2 1 21 2 0 71 2 1 63 1 0 23 0 2 53 1 0 40 5 4 38 0 1 6 21 14 6 0 3 51 4 0 16 1 0 12 chain 40826 chr7 159138663 + 141275980 141276543 LTR10A 586 - 15 586 68138 7 1 0 111 0 6 6 6 0 190 0 29 79 28 8 135 chain 28768 chr7 159138663 + 141277877 141278275 LTR7 482 - 0 482 90028 49 13 14 52 1 2 70 1 32 38 0 1 73 0 50 101 chain 280301 chr7 159138663 + 141280108 141283840 HERVH-int 3825 - 0 3825 14626 403 1 0 127 7 4 202 0 3 71 1 0 26 0 3 568 5 4 5 0 1 112 0 1 199 5 10 88 0 2 9 1 36 476 1 0 34 18 9 206 15 0 446 1 0 25 0 210 15 18 8 5 0 2 30 2 0 8 146 21 20 27 26 66 13 12 281 0 2 49 chain 27248 chr7 159138663 + 141283850 141284242 LTR7 482 - 8 482 95437 41 13 14 113 0 1 10 12 43 27 0 1 74 0 50 41 2 0 59 chain 9071 chr7 159138663 + 141288037 141288145 MER41B 635 - 8 116 165214 108 chain 23240 chr7 159138663 + 141289363 141289636 AluSp 311 - 15 288 114493 273 chain 28658 chr7 159138663 + 141369609 141369909 AluYf4 310 - 10 310 90498 300 chain 13467 chr7 159138663 + 141427783 141427948 U1 164 + 0 164 146459 45 1 0 119 chain 81218 chr7 159138663 + 141450925 141451903 LTR5_Hs 974 + 0 974 43075 156 7 0 302 0 4 449 1 0 63 chain 306497 chr7 159138663 + 141451917 141455903 HERVK-int 6823 - 2936 6822 13155 97 0 7 124 0 2 142 0 2 17 1 3 163 0 4 135 0 1 4 11 10 230 3 0 544 0 3 5 0 4 554 1 0 7 7 2 164 0 3 21 0 2 181 1 0 209 4 0 223 6 5 303 97 1 8 1 0 19 1 0 28 2 0 204 1 0 135 0 11 12 11 0 46 0 1 34 1 0 20 11 8 56 2 0 11 6 5 17 1 0 26 1 0 6 7 6 20 1 0 23 4 2 12 1 0 4 chain 3170 chr7 159138663 + 141455904 141455938 LTR5B 1012 - 0 34 221555 34 chain 12762 chr7 159138663 + 141468932 141469248 MSTD 398 + 58 398 149199 74 1 30 10 11 14 16 97 90 35 6 5 66 chain 543564 chr7 159138663 + 141469769 141475886 L1PA4 6152 - 9 6149 2260 835 0 4 808 0 13 131 0 4 288 1 0 895 0 1 97 0 1 752 0 1 2310 chain 22244 chr7 159138663 + 141491653 141491900 AluYb8 318 + 13 305 119152 71 0 45 176 chain 25453 chr7 159138663 + 141499548 141499896 THE1B 368 + 0 368 102441 40 0 15 14 4 14 85 1 0 24 5 2 99 1 0 75 chain 6042 chr7 159138663 + 141503356 141503428 tRNA-Gln-CAA_ 72 + 0 72 184878 72 chain 83204 chr7 159138663 + 141521634 141522664 L1PA7 6471 - 12 1034 42249 142 1 2 121 14 0 492 0 2 65 9 11 79 1 2 106 chain 20692 chr7 159138663 + 141522664 141522974 L1MA3 4352 - 4005 4314 124757 38 7 6 129 5 0 18 1 0 20 4 6 39 0 4 49 chain 175740 chr7 159138663 + 141569712 141571824 L1PA6 6164 + 4081 6162 21370 162 1 0 551 0 12 25 43 1 359 3 1 120 0 4 426 0 2 85 1 2 220 4 0 107 1 0 4 chain 70636 chr7 159138663 + 141581958 141582716 L1HS 6032 - 0 758 48091 758 chain 77214 chr7 159138663 + 141582716 141583542 L1HS 6032 + 4441 5267 44863 826 chain 37706 chr7 159138663 + 141598192 141598615 L1PA5 6144 - 1123 1546 72039 423 chain 97723 chr7 159138663 + 141598615 141599710 L1PA5 6144 + 5032 6128 37357 268 0 1 592 0 1 104 1 0 130 chain 567900 chr7 159138663 + 141620481 141626512 L1HS 6032 - 0 6032 32 5959 0 1 72 chain 48591 chr7 159138663 + 141626526 141627093 L1PA5 6144 - 12 577 60044 317 2 0 248 chain 41686 chr7 159138663 + 141650411 141650951 MLT2A2 560 + 0 560 67043 180 1 0 25 4 9 139 0 1 48 0 11 137 0 4 6 chain 79765 chr7 159138663 + 141662152 141663043 MER11D 897 + 0 888 43702 283 3 0 605 chain 49804 chr7 159138663 + 141664170 141664945 L1PB 1623 - 37 780 59153 11 2 0 22 27 29 9 1 0 13 21 14 4 1 0 18 0 1 11 2 1 7 1 0 122 8 0 13 15 0 25 1 0 4 0 1 316 0 1 5 1 0 75 0 1 40 chain 17811 chr7 159138663 + 141674273 141674489 L1PA7 6471 - 21 237 133369 216 chain 543912 chr7 159138663 + 141679893 141685912 L1PA3long 6157 - 5 6157 2226 259 0 3 1359 0 1 3626 0 128 623 0 1 152 chain 51048 chr7 159138663 + 141698052 141698690 L1PA8 5853 - 0 634 58280 93 1 0 19 2 1 47 1 0 14 3 2 69 2 0 44 1 0 321 0 3 21 chain 5491 chr7 159138663 + 141770281 141770455 MER20 218 + 22 204 190129 56 4 0 7 1 0 4 78 91 24 chain 3856 chr7 159138663 + 141798760 141798832 MER58A 224 + 11 86 209504 16 0 1 7 14 16 35 chain 5541 chr7 159138663 + 141798900 141799074 MER20 218 + 22 204 189649 57 4 0 6 1 0 4 1 0 4 73 87 24 chain 5114 chr7 159138663 + 141818070 141818141 L1MB1 2102 - 102 172 193919 4 0 1 53 2 0 12 chain 4678 chr7 159138663 + 141834603 141834746 MER5C 305 - 66 209 198772 36 0 1 6 1 0 13 4 0 9 1 0 4 19 28 14 12 10 14 2 0 8 chain 3572 chr7 159138663 + 141848001 141848241 HAL1-2a_MD 234 + 0 124 214113 21 125 36 12 6 0 11 13 4 18 9 0 11 3 0 11 chain 25203 chr7 159138663 + 141849743 141850039 AluSp 311 - 14 310 103724 296 chain 18240 chr7 159138663 + 141874818 141875038 L1PREC2 3366 - 1117 1337 132234 220 chain 36140 chr7 159138663 + 141903162 141903702 L1PA16 3655 + 2081 2651 74719 19 1 3 6 2 0 24 8 35 71 1 0 25 1 0 137 21 23 72 3 6 149 chain 4464 chr7 159138663 + 141909598 141909649 MER33 330 + 8 59 201181 51 chain 442717 chr7 159138663 + 141909715 141915268 L1PA7 6471 + 3 6470 8969 205 0 1 35 0 15 144 3 0 67 0 10 360 0 1 430 16 16 313 0 1 300 4 5 335 12 1 78 1 0 261 0 1 45 6 5 4 1 0 91 0 20 123 0 1 148 0 1 274 6 19 190 9 8 299 1 0 19 0 1 93 0 8 169 6 14 557 0 8 206 0 850 578 17 18 45 8 0 94 chain 23016 chr7 159138663 + 141915288 141915577 AluSp 311 + 10 301 115547 97 1 0 25 4 7 162 chain 3413 chr7 159138663 + 141917508 141917567 L1MA4 2864 + 2749 2806 216878 18 8 6 33 chain 95126 chr7 159138663 + 141960833 141962138 L1PBa 3878 - 143 1424 38055 19 2 1 208 10 0 93 0 1 192 2 0 68 17 7 96 1 3 321 12 0 11 5 12 121 10 11 117 chain 4662 chr7 159138663 + 142047862 142047916 L1PB1 5432 - 329 386 198934 49 0 3 5 chain 28030 chr7 159138663 + 142182739 142183143 L1PA8 5853 - 0 400 92890 93 1 0 17 1 0 38 16 15 9 1 0 57 2 5 10 2 0 45 1 0 111 chain 2602 chr7 159138663 + 142185970 142185998 L1MA4 2864 - 55 83 231667 28 chain 27563 chr7 159138663 + 142196008 142196361 THE1A 353 - 0 353 94460 243 1 0 19 8 9 82 chain 111050 chr7 159138663 + 142219933 142221231 L1PA7 6471 - 7 1304 33916 143 1 0 6 0 1 353 2 0 327 0 1 466 chain 20203 chr7 159138663 + 142256934 142257205 L1PA8 5853 - 0 266 126522 92 2 1 19 2 1 61 1 0 69 2 0 23 chain 50235 chr7 159138663 + 142343534 142344131 L1PA7 6471 + 5862 6461 58844 88 0 1 345 1 2 163 chain 75779 chr7 159138663 + 142357893 142358857 L1PA10 4194 + 3181 4150 45605 73 1 0 4 0 1 127 0 5 9 0 2 21 0 1 692 10 7 27 chain 29216 chr7 159138663 + 142367403 142367723 AluYb8 318 - 0 318 87982 192 2 0 126 chain 42759 chr7 159138663 + 142371179 142371713 HSMAR1 1287 + 747 1287 65711 430 1 0 56 0 3 16 0 4 31 chain 10378 chr7 159138663 + 142376175 142376348 MER2 342 + 142 336 158792 120 30 51 23 chain 70360 chr7 159138663 + 142381240 142382049 L1PA6 6164 + 5352 6161 48235 809 chain 3775 chr7 159138663 + 142391283 142391323 MLT1D 503 + 89 129 210738 40 chain 38044 chr7 159138663 + 142416268 142416771 MER41A 554 + 13 523 72069 131 2 1 4 0 1 25 0 1 261 0 3 31 10 13 39 chain 13995 chr7 159138663 + 142430600 142430773 MER75B 242 + 51 224 144597 173 chain 30175 chr7 159138663 + 142431835 142432270 L1PA8 5853 - 0 428 84250 92 2 1 19 5 4 42 2 1 15 5 4 67 2 0 44 1 0 139 chain 24410 chr7 159138663 + 142433501 142433855 THE1A 353 - 0 352 108028 72 5 4 63 3 0 5 0 3 8 6 5 83 1 0 45 3 4 60 chain 120785 chr7 159138663 + 142433868 142435408 THE1A-int 1579 - 12 1577 30762 156 0 7 94 4 3 288 4 5 4 1 0 92 0 1 120 1 8 212 0 1 31 0 7 49 8 11 476 chain 4350 chr7 159138663 + 142452941 142452990 L1MA5A 2387 + 2241 2290 202590 49 chain 15630 chr7 159138663 + 142524937 142525135 L1PA16 3655 + 3306 3503 139492 110 1 0 87 chain 19150 chr7 159138663 + 142632364 142632584 L1PA5 6144 - 0 222 129680 104 0 1 29 0 1 87 chain 3354 chr7 159138663 + 142652263 142652315 MER96B 391 - 55 114 217996 28 4 0 7 0 11 13 chain 55035 chr7 159138663 + 142655535 142656281 MER4E1 777 + 0 777 55687 34 1 0 37 3 5 34 12 13 150 20 0 21 0 27 8 0 19 85 0 1 115 0 2 226 chain 215085 chr7 159138663 + 142676716 142679656 L1PA13 3608 - 128 3091 18160 12 1 0 20 2 0 4 2 0 43 7 6 4 1 0 34 0 1 20 1 0 63 2 0 114 1 0 31 8 7 249 4 1 360 0 1 18 2 1 4 0 1 27 1 0 46 1 0 42 5 6 120 28 9 169 1 2 23 0 1 76 0 4 37 0 32 604 15 3 17 3 0 5 0 5 19 2 0 304 1 0 12 5 12 153 0 1 123 0 1 52 0 23 24 2 1 16 chain 34743 chr7 159138663 + 142690796 142691229 L1PA8 5853 + 5430 5853 76553 134 1 0 43 3 1 73 1 0 9 1 0 52 1 0 21 1 0 31 3 0 59 chain 32326 chr7 159138663 + 142701156 142701644 MER87B 500 - 8 500 80313 33 16 18 95 5 7 13 11 12 129 9 8 177 chain 4861 chr7 159138663 + 142721067 142721158 MSTD-int 1705 + 1591 1680 196676 40 22 20 29 chain 373689 chr7 159138663 + 142729430 142734162 L1PA8 5853 + 52 5853 10969 20 2 0 9 2 1 12 50 14 194 18 6 63 0 1 220 7 11 23 0 4 357 0 3 68 13 10 52 3 6 13 0 1 344 0 2 40 1 0 145 1 0 529 1 0 521 0 1072 12 7 19 289 0 1 171 1 0 49 1 0 159 31 60 456 0 2 71 3 4 478 4 3 41 2 0 70 2 1 17 1 0 48 1 0 16 2 1 92 chain 27023 chr7 159138663 + 142734866 142735169 AluYk4 311 - 8 311 96209 303 chain 4872 chr7 159138663 + 142753002 142753088 L1PA15 4387 + 4270 4349 196570 44 3 1 12 9 4 18 chain 12695 chr7 159138663 + 142760496 142760635 SVA_E 1901 + 1762 1901 149464 139 chain 29127 chr7 159138663 + 142762329 142762703 THE1C 375 - 0 373 88423 186 9 8 179 chain 77064 chr7 159138663 + 142769704 142770561 L1PA4 6152 + 5290 6152 44935 851 0 5 6 chain 218189 chr7 159138663 + 142775387 142785361 L1PB1 5432 + 41 4811 10860 98 47 32 230 7 5 127 1 0 4 0 1 6 2 1 13 8 9 199 12 12 33 8 0 440 4 2 44 0 1 86 6 8 13 0 8 131 0 4 291 7 9 54 0 1 23 3 1 271 327 0 278 4863 0 21 3 1 5 1 0 5 0 1 330 4 6 146 1 0 243 4 3 365 1 0 130 0 4 645 1 0 246 3 0 184 chain 158531 chr7 159138663 + 142778195 142780560 L1PB1 5432 + 2506 5281 23526 104 12 21 29 10 8 151 2 1 21 5 4 161 0 1 4 1 0 200 6 5 143 3 0 234 0 12 115 0 1 11 3 0 179 0 1 142 8 13 145 1 2 132 0 1 138 226 618 13 1 2 29 1 0 9 1 0 3 2 0 9 7 5 47 2 1 9 3 6 14 0 2 29 chain 540402 chr7 159138663 + 142785374 142791525 L1PA4 6152 + 8 6151 2754 178 4 0 69 1 0 205 14 8 112 1 0 453 0 1 904 0 4 357 0 1 128 0 3 524 0 1 1413 8 0 230 0 1 770 0 1 118 0 1 644 1 0 17 chain 13060 chr7 159138663 + 142792006 142792603 L1PB1 5432 + 4845 5408 10860 254 12 11 4 1 0 20 1 0 13 27 20 50 22 20 43 1 0 16 3 0 15 9 0 11 30 24 24 1 0 22 1 0 12 1 0 4 chain 27106 chr7 159138663 + 142793637 142793961 L1PA5 6144 - 0 320 95919 9 3 0 12 1 0 299 chain 27927 chr7 159138663 + 142802209 142802598 LTR7B 505 + 0 505 93253 105 0 10 56 15 81 37 1 0 22 0 41 89 15 14 19 0 1 30 chain 47277 chr7 159138663 + 142805151 142805790 HERVH-int 3825 + 3186 3825 60983 57 18 17 171 18 18 140 0 1 235 chain 25551 chr7 159138663 + 142807217 142807589 LTR7B 505 + 0 491 101976 105 0 10 56 10 24 6 1 0 18 0 55 15 1 0 22 0 41 18 0 1 70 14 13 20 0 1 16 chain 4199 chr7 159138663 + 142808056 142808137 MER4B 649 - 570 649 204552 21 3 6 5 3 0 19 4 2 26 chain 347266 chr7 159138663 + 142810453 142814537 L1PA6 6164 + 2061 6162 11687 272 0 1 189 0 2 508 0 1 142 1 2 11 0 1 100 1 0 511 0 1 379 0 1 319 0 1 141 1 0 212 3 0 292 12 16 158 0 4 506 0 1 181 0 4 145 chain 3885 chr7 159138663 + 142815445 142815490 MADE1 96 - 50 95 209098 45 chain 29638 chr7 159138663 + 142818829 142819571 MLT2A1 477 + 0 477 86102 154 2 1 8 1 7 16 341 23 174 0 48 46 chain 73863 chr7 159138663 + 142819796 142821114 MER11A 1151 - 0 1151 46584 66 1 0 28 0 1 49 12 13 101 1 0 4 22 29 24 319 34 233 0 1 156 0 1 22 0 1 13 0 1 69 5 16 61 1 0 29 2 0 36 0 99 64 chain 10196 chr7 159138663 + 142822555 142822691 LTR8 732 + 588 724 159643 80 0 2 21 2 0 33 chain 52016 chr7 159138663 + 142824335 142825102 MER4E 760 + 0 752 57617 19 21 0 35 4 19 31 2 1 46 22 25 187 1 3 80 2 1 76 23 11 75 1 0 13 0 1 129 chain 45500 chr7 159138663 + 142830950 142831699 L1PB1 5432 - 23 700 62495 5 1 0 13 1 0 19 0 3 23 2 0 14 8 5 19 14 5 7 3 0 16 1 0 43 1 0 16 2 1 53 27 20 11 1 0 16 3 0 6 53 11 371 chain 14792 chr7 159138663 + 142831889 142832062 L1P5 443 - 25 198 141955 173 chain 7868 chr7 159138663 + 142840245 142840340 L1PA8A 6298 + 6190 6285 171882 95 chain 73127 chr7 159138663 + 142847633 142848586 L1PA7 6471 - 14 953 46961 389 0 6 19 1 0 3 31 0 13 0 11 316 0 2 73 5 4 103 chain 34514 chr7 159138663 + 142853255 142853953 L1PB1 5432 + 4847 5422 76884 199 0 1 5 1 0 51 91 4 7 5 0 22 1 0 10 11 8 5 2 0 9 2 0 51 1 2 5 2 0 11 4 3 40 1 0 16 25 12 16 14 12 10 2 0 24 1 0 22 7 6 6 1 0 18 chain 538570 chr7 159138663 + 142857311 142863441 L1PA5 6144 - 4 6144 3059 109 1 0 1678 2 0 9 0 2 60 1 0 605 3 6 1353 0 1 610 1 2 121 0 6 145 1 0 66 0 1 17 3 4 1345 chain 45314 chr7 159138663 + 142874908 142875539 LTR10E 629 - 0 629 62700 6 1 0 41 33 31 256 2 1 120 17 14 91 0 6 47 1 0 16 chain 32834 chr7 159138663 + 142875883 142876308 MLT2A1 477 - 0 476 79486 51 3 41 153 0 8 50 1 5 28 0 1 139 chain 5771 chr7 159138663 + 142877846 142877930 MADE1 96 - 0 96 187430 34 5 17 45 chain 33328 chr7 159138663 + 142878021 142878407 L1PA5 6144 + 5757 6144 78689 304 0 1 82 chain 7890 chr7 159138663 + 142899025 142899139 L1MA6 2487 - 289 404 171725 47 1 0 15 3 4 34 0 1 14 chain 30010 chr7 159138663 + 142925199 142925541 L1PA7 6471 - 1 343 84776 342 chain 3733 chr7 159138663 + 142954416 142954538 L1MA7 2200 + 2050 2164 211413 35 4 2 10 44 39 23 1 0 5 chain 13967 chr7 159138663 + 142961361 142961529 AluSp 311 + 107 274 144685 54 5 4 109 chain 8857 chr7 159138663 + 142973540 142973651 Tigger1 2417 - 829 941 166341 7 0 1 104 chain 7751 chr7 159138663 + 142978202 142978297 MER4A 717 + 0 95 172600 95 chain 2740 chr7 159138663 + 142995150 142995213 MER5A 189 - 7 71 229619 12 14 16 32 1 0 4 chain 13765 chr7 159138663 + 143010473 143010751 LTR3B_ 500 - 55 302 145386 23 48 15 47 0 1 4 9 10 42 1 0 6 3 0 7 0 1 23 12 15 53 chain 43825 chr7 159138663 + 143109582 143110136 MER41A 554 + 0 554 64417 262 1 0 168 0 1 123 chain 25918 chr7 159138663 + 143117774 143118133 THE1B 368 - 0 368 100344 124 7 0 43 1 3 26 8 7 105 1 16 44 chain 139640 chr7 159138663 + 143120308 143122050 LTR12C 1709 - 0 1709 26196 164 5 4 313 0 4 106 4 2 4 1 0 125 77 0 110 0 40 399 0 1 344 0 3 90 chain 3051 chr7 159138663 + 143121030 143121067 LTR12C 1709 - 881 918 152385 37 chain 3334 chr7 159138663 + 143121067 143121107 LTR12C 1709 - 760 800 133559 40 chain 25173 chr7 159138663 + 143124875 143125158 AluYc 301 - 14 299 103892 171 0 2 112 chain 23220 chr7 159138663 + 143132857 143133145 AluSc 308 + 8 300 114597 264 1 5 23 chain 49187 chr7 159138663 + 143169266 143169837 LTR14C 587 + 0 587 59604 64 6 21 50 0 1 451 chain 20616 chr7 159138663 + 143183378 143183618 THE1A 353 - 0 243 125239 148 0 3 92 chain 2953 chr7 159138663 + 143211245 143211278 L1MA5A 2387 + 2237 2270 226024 33 chain 22100 chr7 159138663 + 143234384 143234759 LTR7 482 - 57 482 119780 87 8 9 23 0 1 8 1 32 42 67 85 23 1 0 115 chain 296530 chr7 159138663 + 143236014 143239599 HERVH-int 3825 - 0 3825 13616 225 3 8 135 9 10 80 37 247 1116 0 4 284 8 35 239 0 1 218 15 0 260 2 0 184 1 0 50 1 0 30 2 1 21 43 1 17 0 51 28 1 0 10 1 0 38 5 0 309 0 11 43 1 0 169 chain 9068 chr7 159138663 + 143239601 143239706 LTR7 482 - 0 105 165223 105 chain 6414 chr7 159138663 + 143239721 143239793 L1PA3long 6157 - 4 76 181923 72 chain 66452 chr7 159138663 + 143250049 143251098 MER11B 1079 - 31 1079 49890 168 0 1 51 103 98 10 1 0 9 0 7 109 5 0 8 5 11 32 8 10 10 0 1 15 24 12 22 19 18 93 0 5 74 0 1 283 chain 3121 chr7 159138663 + 143251098 143251135 L1MA4A 3247 - 3066 3103 222533 37 chain 22482 chr7 159138663 + 143266621 143267005 THE1B 368 - 0 368 118098 128 14 12 14 30 36 9 1 0 66 1 0 27 26 8 68 chain 282925 chr7 159138663 + 143274000 143277869 L1P3 4156 - 18 3559 14477 22 1 0 9 2 0 176 0 1 326 0 1 53 0 4 27 15 0 17 0 2 790 0 1 80 13 1 131 0 2 344 302 0 39 9 13 609 0 1 37 0 2 158 27 3 495 0 1 86 9 2 42 0 16 50 chain 230130 chr7 159138663 + 143281184 143284234 L1P3 4156 + 0 3063 17301 239 23 22 59 11 10 79 14 7 325 0 12 22 17 8 33 7 6 112 12 6 220 0 10 94 20 21 12 0 1 294 0 1 923 0 2 88 15 16 145 6 7 173 0 9 107 chain 10239 chr7 159138663 + 143324024 143324176 MER1A 529 - 42 202 159424 22 19 27 111 chain 44610 chr7 159138663 + 143332717 143333290 LTR19B 566 - 1 566 63469 267 16 9 164 1 0 125 chain 10117 chr7 159138663 + 143403243 143403395 MER1A 529 - 42 202 160006 22 19 27 111 chain 44610 chr7 159138663 + 143411935 143412508 LTR19B 566 - 1 566 63468 267 16 9 164 1 0 125 chain 72478 chr7 159138663 + 143426706 143427645 L1PA8 5853 - 6 947 47278 84 1 0 22 2 1 49 1 0 12 2 3 68 3 1 43 1 0 79 0 2 399 0 2 68 14 16 38 6 7 47 chain 44644 chr7 159138663 + 143438221 143439092 L1M1 2793 + 656 2695 63434 8 0 11 27 128 104 25 14 11 50 4 2 8 1 0 59 1 0 4 0 1 23 17 16 174 1 0 33 29 1222 118 13 12 64 1 0 46 1 0 11 1 0 10 chain 240725 chr7 159138663 + 143439263 143442466 L1P3 4156 - 941 4156 16733 259 0 9 173 6 7 145 15 16 88 0 2 410 2 0 5 4 6 502 0 1 294 0 1 12 20 21 93 0 10 221 12 6 112 7 6 33 17 8 22 0 12 325 24 16 70 11 10 59 23 22 239 chain 262123 chr7 159138663 + 143446043 143449862 L1P2 5180 + 565 4035 15576 176 21 0 46 21 36 156 24 0 159 12 14 27 0 1 606 15 19 36 303 0 344 0 2 140 20 1 71 0 1 782 2 1 5 0 3 17 15 0 24 0 4 56 0 1 328 0 1 413 chain 23085 chr7 159138663 + 143456652 143457035 THE1B 368 + 0 368 115218 68 26 8 93 1 0 9 30 36 14 14 12 128 chain 66089 chr7 159138663 + 143472546 143473595 MER11B 1079 + 0 1048 50059 283 0 1 74 0 5 93 19 18 22 24 12 15 0 1 10 8 10 32 5 11 8 5 0 99 5 12 14 1 0 10 56 48 16 5 7 16 10 11 51 0 1 168 chain 6668 chr7 159138663 + 143483853 143483924 L1PA4 6152 + 6075 6146 179917 71 chain 9068 chr7 159138663 + 143483940 143484045 LTR7 482 + 377 482 165222 105 chain 301104 chr7 159138663 + 143484047 143487637 HERVH-int 3825 + 0 3825 13367 169 1 0 43 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 2 1 30 1 0 50 1 0 184 2 0 266 16 1 211 0 1 239 8 35 833 2 1 570 8 218 109 9 10 135 3 8 225 chain 22497 chr7 159138663 + 143488892 143489271 LTR7 482 + 0 429 118038 115 1 0 23 56 73 10 1 2 42 1 32 8 0 1 23 8 9 91 chain 43829 chr7 159138663 + 143518537 143519110 LTR19B 566 + 0 565 64408 125 1 0 147 16 0 4 0 1 12 1 9 267 chain 10239 chr7 159138663 + 143527654 143527806 MER1A 529 + 327 487 159423 111 19 27 22 chain 37556 chr7 159138663 + 143639255 143639757 L1PREC2 3366 + 2272 2799 72745 15 6 10 153 0 19 156 1 4 123 2 0 26 0 1 20 chain 59693 chr7 159138663 + 143663148 143663802 L1PA3long 6157 - 8 663 52998 537 0 1 117 chain 21035 chr7 159138663 + 143666181 143666440 AluY 311 + 36 296 123787 117 1 2 141 chain 27565 chr7 159138663 + 143692540 143692826 AluYd8 298 - 12 298 94452 286 chain 85156 chr7 159138663 + 143693218 143694232 LTR5B 1012 - 0 1012 41465 124 14 26 729 15 1 132 chain 3339 chr7 159138663 + 143702520 143702559 LTR67B 553 + 488 527 218252 39 chain 78860 chr7 159138663 + 143707068 143708070 MER11A 1151 - 0 1151 44122 183 0 1 108 6 40 96 6 9 409 0 11 33 0 1 106 0 99 55 chain 136394 chr7 159138663 + 143711810 143713465 L1PA8 5853 + 4203 5853 26766 201 0 1 134 1 0 467 0 2 310 0 1 245 1 0 46 2 0 65 15 13 11 1 0 45 1 0 16 1 0 93 chain 27081 chr7 159138663 + 143715883 143716231 THE1B 368 - 0 368 95995 27 0 18 155 1 0 123 0 5 27 2 0 13 chain 25907 chr7 159138663 + 143737780 143738051 AluYb8 318 + 38 309 100396 271 chain 44594 chr7 159138663 + 143742179 143742681 L1PA4 6152 + 5637 6151 63487 14 3 14 431 0 1 54 chain 11688 chr7 159138663 + 143755492 143755711 THE1C 375 - 0 221 153528 26 1 0 30 11 10 92 45 49 14 chain 33382 chr7 159138663 + 143756205 143756696 THE1C-int 1605 - 18 505 78599 29 6 8 109 1 0 21 6 0 248 31 32 19 0 2 5 2 0 14 chain 84067 chr7 159138663 + 143757765 143758852 MER11B 1079 + 0 1079 41877 101 1 0 149 0 1 8 3 0 301 36 35 175 0 2 2 8 0 279 1 2 19 0 1 4 chain 24694 chr7 159138663 + 143758852 143759136 THE1B-int 1605 + 1305 1594 106470 213 0 5 71 chain 5979 chr7 159138663 + 143759507 143759597 THE1C-int 1605 - 1421 1568 185438 24 4 61 62 chain 50265 chr7 159138663 + 143762907 143763527 L1PB1 5432 - 2028 2650 58813 78 1 0 4 0 1 100 0 3 382 1 0 54 chain 140501 chr7 159138663 + 143763527 143765582 L1PB1 5432 + 3417 5413 26073 197 8 6 112 1 0 99 0 1 460 1 6 12 1 0 70 0 1 82 3 4 160 3 1 75 1 3 157 1 4 32 1 0 200 55 18 21 1 0 9 1 0 9 43 37 26 1 0 18 2 1 43 1 0 15 1 0 4 27 16 11 8 5 14 2 0 24 5 7 14 2 1 12 1 0 9 chain 13349 chr7 159138663 + 143781890 143782220 MER51B 395 - 6 395 146888 35 1 0 29 14 31 49 70 86 38 1 3 14 1 7 29 23 42 26 chain 30261 chr7 159138663 + 143789249 143789767 L1PA13 3608 - 60 563 84033 11 3 0 16 6 0 3 1 0 18 20 12 22 1 0 18 9 5 47 2 0 10 8 5 47 1 0 17 7 25 18 2 0 114 1 0 28 1 0 87 chain 41373 chr7 159138663 + 143790586 143791045 L1PA4 6152 - 14 474 67437 99 0 1 360 chain 78023 chr7 159138663 + 143816879 143817732 L1PA3long 6157 - 410 1263 44500 853 chain 76102 chr7 159138663 + 143817732 143818593 L1P1 4361 + 3460 4319 45370 691 1 0 154 1 0 14 chain 118012 chr7 159138663 + 143867529 143869064 THE1B-int 1605 + 0 1600 31799 11 5 7 118 0 1 4 6 5 282 0 26 78 0 3 359 0 1 128 0 2 143 0 1 82 0 22 128 1 2 111 4 9 52 0 2 23 chain 13338 chr7 159138663 + 143877482 143877649 MER47A 366 + 112 279 146941 167 chain 23049 chr7 159138663 + 143878297 143878679 THE1B 368 - 0 368 115400 128 14 12 14 5 13 9 2 0 23 1 0 87 35 18 64 chain 28671 chr7 159138663 + 143898612 143898923 AluYa5 310 - 0 310 90444 184 1 0 126 chain 3102 chr7 159138663 + 143900511 143900544 L1M3b 1512 - 737 770 222885 33 chain 44371 chr7 159138663 + 143904910 143905391 LTR7 482 - 0 482 63732 261 0 1 220 chain 7500 chr7 159138663 + 143905781 143905867 HERVH-int 3825 - 0 86 174160 86 chain 26902 chr7 159138663 + 143910731 143911150 THE1A 353 + 0 353 96623 101 78 13 28 1 0 211 chain 123775 chr7 159138663 + 143911150 143912721 THE1A-int 1579 + 0 1574 29783 438 0 2 300 16 17 209 1 2 180 9 8 418 chain 28274 chr7 159138663 + 143912726 143913080 THE1A 353 + 0 352 92022 45 1 0 66 1 0 241 chain 11129 chr7 159138663 + 143932937 143933115 MER30 238 - 0 202 155703 30 12 9 49 13 40 74 chain 22070 chr7 159138663 + 143952914 143953166 L1PA2 6032 + 5782 6032 119921 237 2 0 13 chain 23049 chr7 159138663 + 143968260 143968642 THE1B 368 + 0 368 115399 64 35 18 87 1 0 23 2 0 9 5 13 14 14 12 128 chain 28274 chr7 159138663 + 144032096 144032450 THE1A 353 - 1 353 92023 242 1 0 65 1 0 45 chain 123374 chr7 159138663 + 144032455 144034026 THE1A-int 1579 - 5 1579 29925 418 9 8 180 1 2 209 16 17 300 0 2 438 chain 26902 chr7 159138663 + 144034026 144034445 THE1A 353 - 0 353 96624 211 1 0 28 78 13 101 chain 7500 chr7 159138663 + 144039309 144039395 HERVH-int 3825 + 3739 3825 174159 86 chain 44371 chr7 159138663 + 144039785 144040266 LTR7 482 + 0 482 63731 224 0 1 257 chain 3102 chr7 159138663 + 144044636 144044669 L1M3b 1512 + 742 775 222884 33 chain 107432 chr7 159138663 + 144114151 144115554 LTR12C 1709 - 0 1709 34855 84 1 0 68 0 101 228 11 4 15 24 0 53 0 47 242 0 118 279 0 1 78 14 57 34 0 28 272 chain 416768 chr7 159138663 + 144116630 144121458 HERV9-int 5642 - 818 5642 9611 2567 2 1 159 0 3 222 0 1 593 0 2 169 4 0 197 4 0 119 1 0 791 chain 16044 chr7 159138663 + 144121504 144121695 LTR12C 1709 - 1518 1709 138235 191 chain 25201 chr7 159138663 + 144123617 144123941 THE1B 368 - 27 368 103734 53 2 1 85 0 4 34 1 0 109 2 17 38 chain 118506 chr7 159138663 + 144123947 144125458 THE1B-int 1605 - 6 1567 31618 284 1 28 160 9 2 7 0 7 18 4 0 296 11 12 328 0 25 241 5 6 147 chain 3293 chr7 159138663 + 144133287 144133322 MER3 215 + 6 41 219103 35 chain 21985 chr7 159138663 + 144142489 144142748 AluSc8 310 + 40 302 120295 91 1 4 167 chain 23854 chr7 159138663 + 144143497 144143832 L1PA8 5853 + 5518 5847 111160 46 1 0 44 2 0 26 0 1 44 1 0 15 1 0 45 3 2 19 2 1 86 chain 13923 chr7 159138663 + 144145527 144145698 MER47A 366 - 9 180 144849 171 chain 13831 chr7 159138663 + 144156343 144156636 L1PB1 5432 - 5 264 145123 5 2 0 18 1 0 13 1 0 21 1 0 24 28 23 15 33 12 15 1 0 45 1 0 15 2 1 52 chain 160882 chr7 159138663 + 144233385 144235150 L1PA3long 6157 + 4385 6157 23213 1627 0 7 138 chain 27609 chr7 159138663 + 144235160 144235976 L1PREC2 3366 + 2521 3216 94326 223 11 8 46 13 17 9 1 0 4 0 1 21 1 0 3 3 0 14 55 42 13 2 0 30 3 0 8 25 11 35 14 12 21 241 157 20 chain 18643 chr7 159138663 + 144260658 144260873 L1PA4 6152 + 5936 6152 131101 131 0 1 84 chain 25305 chr7 159138663 + 144264543 144264866 THE1A 353 - 0 341 103197 243 1 0 21 3 22 55 chain 17745 chr7 159138663 + 144270669 144270897 THE1C-int 1605 - 1306 1588 133581 85 5 59 138 chain 39789 chr7 159138663 + 144271741 144272212 L1PA7 6471 - 12 492 69641 32 0 9 439 chain 374881 chr7 159138663 + 144311276 144315734 L1PA5 6144 + 0 6144 10925 265 1 2 89 6 29 44 14 4 319 15 17 392 18 9 172 0 1675 147 1 0 15 0 1 505 2 0 1609 1 0 10 0 1 332 0 6 501 chain 25296 chr7 159138663 + 144324263 144324617 THE1B 368 - 0 368 103246 77 5 4 93 0 2 24 1 0 60 1 0 53 4 19 36 chain 117524 chr7 159138663 + 144347400 144349095 LTR12C 1709 + 69 1709 31956 391 32 27 30 14 15 278 0 40 172 41 0 50 0 47 40 41 0 56 44 13 240 23 0 72 1 0 85 1 0 84 chain 1874 chr7 159138663 + 144348333 144348358 LTR12C 1709 + 837 862 80595 25 chain 3074 chr7 159138663 + 144348448 144348489 LTR12C 1709 + 952 993 80595 41 chain 80897 chr7 159138663 + 144359597 144360702 L1PA11 4918 - 3736 4833 43235 105 0 2 32 32 11 33 0 4 372 0 1 75 0 4 60 0 1 175 0 9 26 1 0 53 2 1 5 2 0 33 2 1 51 2 0 15 1 0 28 chain 11860 chr7 159138663 + 144361043 144361189 L1PA11 4918 + 4215 4356 152791 110 5 0 31 chain 31597 chr7 159138663 + 144387915 144388430 L1PA15 4387 + 3868 4366 81495 22 2 0 9 3 9 24 1 0 83 1 0 89 1 0 27 1 0 54 1 0 18 22 17 47 9 6 41 3 1 12 10 5 25 1 0 9 chain 164385 chr7 159138663 + 144388761 144390550 L1PA2 6032 - 4 1797 22762 18 0 4 1771 chain 51668 chr7 159138663 + 144390550 144391110 L1PA2 6032 + 3667 4227 57782 560 chain 29833 chr7 159138663 + 144412763 144413153 MLT2A1 477 - 74 476 85341 25 0 7 60 0 1 52 0 7 81 6 3 166 chain 88040 chr7 159138663 + 144423825 144424817 LTR13 1007 + 10 1007 40358 186 7 10 719 0 2 80 chain 252616 chr7 159138663 + 144448220 144451414 L1P2 5180 - 6 3224 16096 39 1 0 48 1 0 141 2 1 240 1 0 4 0 1 18 8 10 37 3 0 134 0 5 132 11 23 81 1 0 51 0 2 200 0 3 748 29 33 52 1 0 53 2 0 222 0 4 110 0 3 460 4 3 360 chain 121688 chr7 159138663 + 144453095 144454854 L1PA5 6144 - 1 1437 30485 10 4 1 371 1 0 117 0 6 343 0 3 283 328 0 302 chain 26263 chr7 159138663 + 144487065 144487359 AluSq10 312 - 17 311 98966 294 chain 222422 chr7 159138663 + 144495390 144498762 L1PA10 4194 + 950 4083 17733 167 0 1 314 4 3 249 3 53 20 29 29 84 0 3 90 0 6 147 0 1 101 4 8 175 1 0 215 1 2 16 312 7 28 2 0 6 18 8 16 0 4 41 14 7 210 39 39 129 1 0 250 6 7 15 1 0 221 14 15 13 0 4 130 9 21 213 0 1 64 chain 21912 chr7 159138663 + 144512250 144512543 AluY 311 + 0 287 120578 48 19 12 72 0 1 154 chain 7530 chr7 159138663 + 144525029 144525115 LTR12C 1709 + 1293 1379 173977 86 chain 49608 chr7 159138663 + 144546187 144547305 L1PA16 3655 - 1070 1826 59314 130 12 16 170 1 0 37 1 0 85 12 0 17 9 25 100 4 0 47 376 9 77 17 20 23 chain 16657 chr7 159138663 + 144592763 144593076 Tigger3c 601 - 26 547 136521 47 12 14 31 8 9 131 45 250 39 chain 4271 chr7 159138663 + 144614277 144614328 L1MB1 2102 - 97 148 203606 51 chain 155252 chr7 159138663 + 144615809 144617602 L1PA5 6144 + 4330 6143 23954 13 0 8 119 6 8 44 5 9 611 0 5 150 0 4 444 0 3 242 6 0 153 chain 8279 chr7 159138663 + 144622183 144622280 L1P5 443 - 110 207 169516 97 chain 8686 chr7 159138663 + 144665331 144665457 L1PA8 5853 - 0 125 167272 15 2 3 75 1 0 19 2 1 12 chain 82171 chr7 159138663 + 144688762 144689672 L1PA3long 6157 - 854 1763 42693 460 1 0 449 chain 76965 chr7 159138663 + 144689672 144690521 L1PA3long 6157 + 5295 6142 44940 5 1 0 598 1 0 244 chain 18956 chr7 159138663 + 144701146 144701464 THE1D 372 + 0 332 130210 47 3 0 20 18 19 16 1 0 64 20 19 6 0 2 26 4 20 93 chain 29714 chr7 159138663 + 144708358 144708676 AluYb8 318 + 0 318 85784 318 chain 20626 chr7 159138663 + 144718460 144718698 L1PA5 6144 - 6 251 125203 136 1 8 101 chain 23383 chr7 159138663 + 144751804 144752074 AluY 311 + 43 310 113743 100 3 0 167 chain 41697 chr7 159138663 + 144766357 144766813 L1PA5 6144 - 3 460 67029 151 0 1 305 chain 74057 chr7 159138663 + 144766813 144767636 L1PA5 6144 + 4848 5675 46480 449 0 4 374 chain 25899 chr7 159138663 + 144773032 144773383 THE1A 353 + 0 353 100443 109 2 1 19 8 12 62 1 0 150 chain 17106 chr7 159138663 + 144815167 144815429 MER75B 242 - 4 242 135295 89 37 3 6 1 0 69 1 12 59 chain 3254 chr7 159138663 + 144819870 144820213 MLT1E2 623 - 47 439 219924 14 7 12 28 58 74 17 201 229 18 chain 26698 chr7 159138663 + 144853201 144853508 AluYk11 308 - 1 308 97330 307 chain 5366 chr7 159138663 + 144862925 144863004 L1PA8 5853 + 5696 5773 191350 44 2 1 19 1 0 13 chain 29932 chr7 159138663 + 144904863 144905177 AluYb8 318 - 4 318 85016 314 chain 270467 chr7 159138663 + 144910273 144913489 L1PA7 6471 - 19 3250 15166 155 2 0 160 0 1 342 0 1 89 6 7 76 2 0 413 0 1 548 0 11 646 6 5 240 0 1 380 0 8 85 4 0 62 chain 48564 chr7 159138663 + 144924668 144925386 L1PB1 5432 - 285 1050 60067 13 4 2 18 1 0 8 21 48 38 14 35 276 2 5 83 11 8 78 5 7 146 chain 30760 chr7 159138663 + 144930205 144930576 L1PA7 6471 - 6 383 82940 181 0 4 184 0 2 6 chain 42838 chr7 159138663 + 144930665 144932643 L1PA5 6144 - 12 1998 19984 784 0 3 50 0 2 85 0 1 46 0 1 810 0 1 203 chain 547802 chr7 159138663 + 144932646 144939161 L1PA3long 6157 - 8 6149 1729 617 0 1 153 1 0 564 10 4 2951 0 1 100 373 0 566 0 3 416 5 6 759 chain 30513 chr7 159138663 + 144937042 144937411 L1HS 6032 + 1033 1406 82937 23 6 9 55 0 1 285 chain 6367 chr7 159138663 + 144939175 144939469 L1PA5 6144 - 1998 2292 19984 294 chain 4903 chr7 159138663 + 144964539 144964600 MLT1A1-int 1737 + 1021 1082 196252 61 chain 7958 chr7 159138663 + 144964739 144964851 MLT1A1 405 + 295 405 171290 40 1 0 58 2 1 11 chain 9926 chr7 159138663 + 144987517 144987633 L1PA4 6152 - 9 125 160944 116 chain 66932 chr7 159138663 + 145001862 145002593 L1PA3long 6157 - 0 731 49671 731 chain 37607 chr7 159138663 + 145002593 145002998 L1PA3long 6157 + 5003 5408 72677 405 chain 23827 chr7 159138663 + 145013073 145013401 L1PA8 5853 - 0 324 111321 66 0 3 25 1 0 15 1 0 44 7 6 15 1 0 69 2 0 46 1 0 35 chain 49245 chr7 159138663 + 145032244 145032879 THE1C-int 1605 - 13 648 59557 5 1 0 188 0 1 181 0 1 6 3 2 251 chain 95366 chr7 159138663 + 145032887 145034100 L1PA8 5853 + 4613 5853 37996 319 0 1 73 0 1 116 8 39 155 1 2 245 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 2 1 92 chain 252729 chr7 159138663 + 145038201 145040971 L1PA3long 6157 + 3382 6153 16094 267 0 1 2503 chain 53369 chr7 159138663 + 145044794 145050626 L1PA5 6144 - 9 793 56793 138 0 1 271 5111 61 235 1 0 54 1 3 21 chain 49063 chr7 159138663 + 145046331 145046915 L1PA7 6471 - 16 603 59701 65 0 1 205 2 3 49 0 1 263 chain 40665 chr7 159138663 + 145050626 145051088 L1PA5 6144 + 5677 6139 68344 462 chain 16642 chr7 159138663 + 145053659 145053843 L1PA4 6152 + 5955 6139 136547 184 chain 6910 chr7 159138663 + 145057048 145057167 LTR12C 1709 - 832 991 147971 12 8 48 99 chain 18868 chr7 159138663 + 145057167 145057598 LTR12C 1709 - 506 939 130469 19 14 98 35 43 6 81 95 8 66 1 0 17 0 40 55 0 3 5 chain 2861 chr7 159138663 + 145060127 145060161 L1PA5 6144 + 5966 6000 227660 34 chain 12302 chr7 159138663 + 145060161 145060302 L1PA5 6144 + 6003 6144 151006 141 chain 14781 chr7 159138663 + 145063228 145063384 L1HS 6032 + 5876 6032 141996 156 chain 547637 chr7 159138663 + 145110069 145116198 L1PA3long 6157 - 2 6151 1748 226 0 2 83 0 1 1482 0 4 1055 0 1 384 0 4 17 0 7 51 0 1 602 1 0 154 1 0 640 0 1 1116 0 1 317 chain 102582 chr7 159138663 + 145203163 145204300 L1PA4 6152 + 5013 6151 36111 823 1 2 313 chain 2923 chr7 159138663 + 145205627 145205664 MLT1E 632 - 442 479 226639 37 chain 15923 chr7 159138663 + 145212874 145213060 L1PA3long 6157 - 1 186 138600 4 1 0 181 chain 34349 chr7 159138663 + 145215067 145215564 LTR43 600 - 1 496 77127 17 9 14 128 4 9 209 19 6 98 1 2 12 chain 210037 chr7 159138663 + 145256263 145258589 L1PA3long 6157 - 1 2325 18478 1313 1 0 172 1 0 839 chain 275556 chr7 159138663 + 145258589 145261688 L1HS 6032 + 593 3697 14897 1714 0 3 833 0 2 552 chain 23694 chr7 159138663 + 145271216 145271505 AluSc 308 + 11 303 112059 12 0 5 103 2 0 172 chain 38773 chr7 159138663 + 145282159 145282674 LTR12 884 + 0 626 71047 25 1 0 52 25 0 42 0 25 120 0 113 190 1 0 59 chain 88343 chr7 159138663 + 145303399 145304450 MER11C 1089 + 0 1063 40247 249 0 1 63 0 4 373 0 4 5 1 0 38 0 1 127 0 1 122 0 1 62 0 1 11 chain 43442 chr7 159138663 + 145305238 145305803 L1PA8 5853 - 0 559 64881 43 0 1 48 2 1 19 2 1 50 1 0 11 3 2 69 2 0 44 1 0 270 chain 112847 chr7 159138663 + 145309079 145310698 L1P1 4361 - 730 2025 33420 351 1 0 24 0 2 91 1 0 329 324 0 498 chain 28479 chr7 159138663 + 145309890 145310200 AluYg6 310 - 0 310 91273 310 chain 138202 chr7 159138663 + 145310706 145312254 L1PA5 6144 + 4593 6144 26454 563 0 3 985 chain 5634 chr7 159138663 + 145312782 145312852 L1MB8 1703 + 1486 1556 188718 70 chain 31464 chr7 159138663 + 145347332 145347704 L1PA7 6471 + 6099 6470 81706 38 1 0 333 chain 26404 chr7 159138663 + 145352138 145352416 AluYg6 310 + 31 309 98395 278 chain 465886 chr7 159138663 + 145356184 145361777 L1PA5 6144 + 1 6132 8193 88 0 525 253 0 1 301 9 0 672 0 1 23 0 89 41 0 1 317 11 8 120 0 6 518 0 1 192 1 0 17 83 0 506 0 1 619 0 1 10 1 0 32 1 5 282 0 3 1318 21 23 157 chain 41671 chr7 159138663 + 145374761 145375313 MER41A 554 + 0 554 67067 136 0 1 117 10 9 95 0 3 163 1 0 30 chain 28002 chr7 159138663 + 145385727 145386280 MER61-int 3695 + 9 504 92996 19 13 1 5 2 0 12 1 0 147 39 0 21 1 2 44 7 21 45 13 6 28 17 18 25 32 18 51 0 1 31 chain 102920 chr7 159138663 + 145393686 145395025 LTR12C 1709 - 0 1709 36017 77 0 3 171 4 5 225 20 13 26 0 207 145 1 0 32 0 123 211 6 7 85 0 43 34 9 0 2 0 9 291 chain 5577 chr7 159138663 + 145396475 145396549 MADE1 96 + 6 96 189305 23 0 16 51 chain 114844 chr7 159138663 + 145489401 145490685 L1PA3long 6157 + 4860 6147 32834 7 0 1 356 0 1 8 6 5 533 0 1 51 0 1 323 chain 9131 chr7 159138663 + 145496032 145496248 L1PA16 3655 + 3408 3593 164904 65 54 24 35 15 17 29 3 0 15 chain 18956 chr7 159138663 + 145502583 145502814 L1PA3long 6157 - 0 248 130212 155 4 21 72 chain 7834 chr7 159138663 + 145511759 145511850 L1PA8 5853 + 5762 5853 172102 91 chain 144634 chr7 159138663 + 145515163 145516811 L1PA4 6152 - 1 1647 25379 243 6 5 839 1 0 559 chain 7391 chr7 159138663 + 145534841 145534928 L1PA3long 6157 + 5865 5952 174828 87 chain 18699 chr7 159138663 + 145534937 145535142 L1PA3long 6157 + 5952 6157 130950 205 chain 45410 chr7 159138663 + 145552115 145552628 MER9a1 513 + 0 513 62583 513 chain 5675 chr7 159138663 + 145625995 145626061 MER58C 217 - 140 206 188345 66 chain 2816 chr7 159138663 + 145645569 145645603 L1MA4A 3247 + 3026 3061 228517 18 0 1 16 chain 11954 chr7 159138663 + 145646306 145646443 L1PA5 6144 - 257 394 152387 137 chain 4166 chr7 159138663 + 145646680 145646724 L1PA5 6144 + 6086 6130 205013 44 chain 21926 chr7 159138663 + 145658021 145658298 AluSp 311 - 30 301 120517 153 9 3 115 chain 498617 chr7 159138663 + 145663685 145669795 L1PA6 6164 + 0 6162 6921 203 0 1 93 0 1 72 26 33 97 11 10 153 2 1 124 0 17 103 0 19 148 7 8 155 5 6 179 8 13 10 1 0 324 7 8 1201 8 0 180 0 1 29 0 1 339 0 1 161 3 0 11 0 1 661 1 3 311 0 1 83 5 6 545 1 5 682 8 0 8 5 13 13 0 1 127 chain 95622 chr7 159138663 + 145674600 145675730 L1PA7 6471 + 5337 6469 37926 284 0 3 76 2 3 503 2 0 263 chain 18057 chr7 159138663 + 145677111 145677311 L1PA4 6152 + 5951 6151 132703 200 chain 5915 chr7 159138663 + 145708861 145708955 L1PB1 5432 - 140 230 186041 12 1 0 43 1 0 16 4 2 17 chain 552122 chr7 159138663 + 145710651 145716685 L1PA2 6032 - 0 6031 1176 13 2 0 839 0 1 2885 1 0 1385 1 0 908 chain 9587 chr7 159138663 + 145732425 145732534 L1PA4 6152 - 9 118 162655 109 chain 536281 chr7 159138663 + 145734056 145740969 L1PA4 6152 - 0 6150 3412 8 0 1 134 0 5 5 3 0 1334 0 2 34 1 0 1178 0 2 1624 769 11 1235 5 0 104 39 33 440 chain 19897 chr7 159138663 + 145738377 145738598 L1PA4 6152 - 736 957 126622 221 chain 45717 chr7 159138663 + 145738598 145739110 L1PA3long 6157 + 5637 6149 62304 512 chain 4639 chr7 159138663 + 145741677 145741734 L1PA4 6152 - 1452 1509 199200 57 chain 65867 chr7 159138663 + 145741734 145742480 L1PA4 6152 - 1514 2260 50122 746 chain 126666 chr7 159138663 + 145742480 145743923 L1PA4 6152 + 4704 6151 28900 302 5 7 288 0 1 38 0 1 810 chain 14704 chr7 159138663 + 145761444 145761612 L1PA4 6152 + 5985 6151 142261 161 2 0 5 chain 24455 chr7 159138663 + 145793060 145793347 AluY 311 + 16 300 107776 116 0 1 101 4 0 66 chain 35267 chr7 159138663 + 145820916 145821351 L1PA7 6471 + 6035 6469 75835 114 0 1 308 2 0 11 chain 241743 chr7 159138663 + 145829512 145832144 L1PA2 6032 - 6 2645 16685 282 1 4 1504 0 4 845 chain 19313 chr7 159138663 + 145846059 145846284 L1PA5 6144 + 5920 6141 129206 215 4 0 6 chain 488903 chr7 159138663 + 145854373 145860258 L1PA5 6144 + 0 6143 7412 120 38 64 625 17 0 9 2 19 332 9 0 383 3 5 275 0 1 558 0 1 352 4 52 442 12 0 64 2 5 572 6 8 321 0 189 260 0 1 612 0 6 705 0 2 5 3 0 6 5 6 143 chain 35903 chr7 159138663 + 145864814 145865352 MLT2A2 560 - 8 560 75012 47 0 14 7 11 0 67 7 18 67 2 1 21 3 1 30 4 0 25 11 10 167 0 8 69 chain 87652 chr7 159138663 + 145888203 145889287 MER11B 1079 - 0 1079 40511 198 1 2 106 5 7 185 10 1 445 0 1 134 chain 4223 chr7 159138663 + 145915813 145915868 MER3 215 + 136 197 204255 33 0 6 22 chain 115268 chr7 159138663 + 145930559 145931825 L1PA3long 6157 - 0 1270 32693 849 0 4 417 chain 285702 chr7 159138663 + 145942170 145945904 HERVH-int 3825 - 0 3825 14307 225 0 2 260 8 218 39 9 11 301 6 5 466 0 1 39 0 1 5 0 1 247 0 4 284 4 31 215 1 0 10 0 2 27 9 0 215 0 13 422 0 3 13 0 3 7 0 1 32 0 20 26 132 0 18 25 1 19 75 42 7 4 0 9 2 1 9 1 0 24 0 1 4 1 0 11 1 0 5 8 16 176 1 0 263 0 1 69 chain 28996 chr7 159138663 + 145945906 145946317 LTR7 482 - 0 482 89002 49 13 14 109 1 0 17 3 35 33 0 1 109 8 46 69 chain 15785 chr7 159138663 + 145957990 145958353 THE1D 372 + 0 372 138999 59 155 165 116 1 0 32 chain 174174 chr7 159138663 + 146000633 146002736 L1P2 5180 - 2297 4440 21576 202 0 2 360 4 2 601 1 0 148 1 3 125 1 0 485 0 25 128 0 15 47 chain 277455 chr7 159138663 + 146002746 146006049 L1PA5 6144 + 2888 6114 14780 619 1 2 335 86 0 61 0 1 65 4 5 304 0 2 753 0 3 233 1 2 21 1 0 536 0 1 283 chain 24599 chr7 159138663 + 146033008 146033313 AluSp 311 + 0 302 106999 4 1 0 293 2 0 5 chain 69800 chr7 159138663 + 146046552 146047348 L1P1 4361 - 2211 3006 48443 88 1 0 707 chain 84486 chr7 159138663 + 146047348 146048281 L1PA4 6152 + 5218 6151 41720 933 chain 29437 chr7 159138663 + 146077879 146078189 AluYf4 310 - 0 310 86916 310 chain 25352 chr7 159138663 + 146100969 146101234 AluYa5 310 + 34 299 102942 265 chain 5108 chr7 159138663 + 146105553 146105608 L1PA5 6144 + 5823 5878 193992 55 chain 23713 chr7 159138663 + 146105609 146105874 L1PA5 6144 + 5878 6143 111963 265 chain 3610 chr7 159138663 + 146113434 146113615 7SLRNA 320 - 104 290 213485 28 44 45 19 70 74 20 chain 22447 chr7 159138663 + 146191154 146191435 AluY 311 + 11 290 118261 26 1 0 95 0 1 143 3 1 13 chain 9746 chr7 159138663 + 146196671 146196831 L1PA8 5853 - 141 295 161862 11 3 1 8 1 0 6 0 1 6 2 1 70 2 0 42 1 0 8 chain 56696 chr7 159138663 + 146227204 146228131 L1PA15 4387 + 3403 4313 54723 288 30 31 91 11 9 45 40 41 25 1 0 170 4 3 25 11 10 44 1 0 21 4 0 6 9 8 47 6 3 25 5 0 18 chain 3591 chr7 159138663 + 146240017 146240157 L1MA8 2339 + 2119 2254 213811 36 85 80 19 chain 22862 chr7 159138663 + 146242449 146242748 L1PA7 6471 - 15 314 116276 135 7 0 7 11 18 139 chain 32013 chr7 159138663 + 146248302 146248672 L1PA2 6032 - 73 443 80842 370 chain 39410 chr7 159138663 + 146286375 146286846 L1PA7 6471 + 5994 6466 70145 318 3 4 150 chain 5044 chr7 159138663 + 146290064 146290125 LTR32 486 - 411 472 194685 61 chain 153199 chr7 159138663 + 146300515 146302178 L1PA2 6032 + 4368 6031 24201 1663 chain 53853 chr7 159138663 + 146327093 146327833 L1PA8 5853 - 6 759 56453 46 0 16 25 1 0 19 4 3 42 25 23 63 2 0 46 1 0 226 5 8 32 1 2 202 chain 222310 chr7 159138663 + 146339249 146341706 L1PA3long 6157 - 0 2460 17738 5 3 0 1481 1 0 538 0 7 429 chain 38971 chr7 159138663 + 146341707 146342139 L1PA3long 6157 + 3278 3710 70781 432 chain 64246 chr7 159138663 + 146346948 146347783 L1PA7 6471 + 5653 6461 50898 202 31 0 15 10 9 173 0 1 84 1 2 187 0 2 63 6 7 63 chain 24125 chr7 159138663 + 146421653 146421950 AluSc5 308 - 1 298 109616 297 chain 95076 chr7 159138663 + 146448714 146449952 L1PA8 5853 - 0 1238 38071 90 1 0 22 2 1 60 2 1 71 2 0 44 1 0 543 22 28 378 chain 5622 chr7 159138663 + 146460099 146460171 THE1B 368 - 294 367 188857 36 0 1 36 chain 22640 chr7 159138663 + 146477707 146478035 L1PA8 5853 + 5437 5760 117375 127 1 0 40 5 4 72 1 0 5 13 12 43 2 1 19 chain 14899 chr7 159138663 + 146484867 146485051 LTR12D 1347 - 695 910 141637 84 2 33 98 chain 40868 chr7 159138663 + 146488018 146488541 L1PA7 6471 - 1 508 68063 12 0 4 137 1 2 27 21 0 325 chain 5446 chr7 159138663 + 146506058 146506238 L1MA9 1812 - 96 242 190562 12 1 0 26 72 42 15 7 5 36 1 0 10 chain 29469 chr7 159138663 + 146509138 146509513 THE1C-int 1605 + 0 429 86763 110 0 54 265 chain 7783 chr7 159138663 + 146509560 146509647 L1PA5 6144 - 17 104 172397 87 chain 32519 chr7 159138663 + 146512856 146513285 L1PA6 6164 - 2 428 79992 140 37 35 247 1 0 4 chain 94592 chr7 159138663 + 146517542 146518582 L1P1 4361 - 1502 2544 38187 358 0 2 682 chain 88621 chr7 159138663 + 146518582 146519574 L1PA4 6152 + 5159 6152 40106 658 0 1 334 chain 57210 chr7 159138663 + 146520976 146521754 L1PA8 5853 - 0 772 54398 54 0 2 28 10 9 19 2 1 37 10 9 15 1 0 71 2 0 46 4 3 63 4 3 260 1 0 4 0 1 147 chain 30205 chr7 159138663 + 146540086 146540403 AluYb9 318 - 1 318 84183 317 chain 553403 chr7 159138663 + 146602879 146608909 L1PA2 6032 + 3 6030 1019 36 1 0 45 5 6 70 5 0 136 0 1 1063 0 2 1701 1 0 2967 chain 557263 chr7 159138663 + 146625545 146631694 L1PA3long 6157 + 6 6157 583 1686 0 1 414 0 3 1681 0 1 1515 2 0 703 7 0 127 0 6 14 chain 132439 chr7 159138663 + 146647398 146649035 L1PA7 6471 - 1 1650 27536 43 0 9 106 15 16 77 0 1 597 2 1 490 0 1 174 0 1 133 chain 69887 chr7 159138663 + 146649035 146649874 L1PA7 6471 + 3969 4813 48333 33 0 3 93 0 1 373 0 1 340 chain 216661 chr7 159138663 + 146664429 146666799 L1PA3long 6157 - 1528 3897 18075 2310 1 0 59 chain 121895 chr7 159138663 + 146666799 146668158 L1PA3long 6157 + 4643 6002 30390 1359 chain 12207 chr7 159138663 + 146668162 146668299 L1PA3long 6157 + 6010 6147 151393 137 chain 3475 chr7 159138663 + 146677015 146677090 MADE1 96 + 0 94 215728 16 15 33 16 1 2 27 chain 47781 chr7 159138663 + 146683118 146683957 L1PB1 5432 - 12 811 60630 16 1 0 13 1 0 21 1 0 20 9 7 11 13 10 14 25 12 14 6 5 6 0 1 34 7 6 9 2 1 52 2 0 9 5 1 11 1 0 13 1 0 17 3 0 9 8 7 328 0 1 19 11 0 65 7 11 19 0 3 28 2 0 6 chain 3506 chr7 159138663 + 146732175 146732214 MER66D 528 - 485 524 215274 39 chain 7340 chr7 159138663 + 146746209 146746297 MSTD 398 - 287 375 175155 88 chain 25901 chr7 159138663 + 146758944 146759248 AluY 311 + 0 311 100429 46 1 7 78 1 2 178 chain 79840 chr7 159138663 + 146772723 146773643 L1PA5 6144 - 0 918 43665 11 3 1 906 chain 3367 chr7 159138663 + 146774793 146774831 MIR 256 + 82 120 217717 38 chain 10882 chr7 159138663 + 146776556 146776681 L1PA4 6152 + 6011 6136 156650 125 chain 166657 chr7 159138663 + 146810843 146813068 L1PA11 4918 - 2683 4893 22441 39 1 0 4 6 0 6 4 3 369 0 1 110 1 2 5 1 0 381 0 1 540 8 0 138 0 1 241 2 3 28 5 13 107 0 1 23 2 1 5 2 0 35 1 0 50 3 1 14 1 0 9 0 1 18 11 7 36 2 0 17 chain 15165 chr7 159138663 + 146817727 146817901 L1PA3long 6157 - 1 175 140871 174 chain 64621 chr7 159138663 + 146839018 146839741 L1P1 4361 - 70 792 50737 141 1 0 581 chain 8160 chr7 159138663 + 146839754 146839844 L1PA4 6152 + 6051 6141 170171 90 chain 20991 chr7 159138663 + 146844065 146844444 THE1D 372 - 0 372 123954 132 57 0 11 7 63 65 0 1 47 9 0 30 8 10 13 chain 63306 chr7 159138663 + 146845597 146846534 LTR12 884 - 0 884 51320 204 103 0 211 6 8 6 16 0 74 2 0 36 11 78 242 1 0 25 chain 52437 chr7 159138663 + 146862250 146862953 L1PB1 5432 - 618 1344 57332 10 3 0 177 2 0 6 10 7 124 0 16 178 1 14 35 0 1 133 0 1 24 chain 38480 chr7 159138663 + 146862954 146863622 L1PB1 5432 + 4798 5422 71469 300 94 72 50 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 7 4 15 2 0 24 1 0 21 1 0 7 0 1 5 1 0 18 chain 151461 chr7 159138663 + 146891074 146892923 L1PA8A 6298 - 7 1875 24402 516 1 7 12 0 1 208 1 5 717 3 0 96 0 6 154 2 7 139 chain 23118 chr7 159138663 + 146899653 146899938 L1PA6 6164 + 5766 6054 115048 49 0 5 12 2 0 222 chain 33474 chr7 159138663 + 146925749 146926136 L1PA7 6471 - 1 387 78452 4 1 0 382 chain 25816 chr7 159138663 + 146965419 146965767 L1PA7 6471 + 6119 6466 100803 91 2 9 102 0 1 126 15 6 12 chain 13715 chr7 159138663 + 146988258 146988460 L1PA8 5853 - 0 198 145556 93 1 0 19 2 1 44 10 9 5 1 0 27 chain 168055 chr7 159138663 + 147009355 147011225 L1PA3long 6157 - 0 1870 22278 923 0 1 4 1 0 942 chain 24560 chr7 159138663 + 147015583 147015922 L1PA8 5853 + 5500 5853 107193 64 0 19 21 5 4 70 2 1 12 1 0 49 2 1 18 2 1 93 chain 106126 chr7 159138663 + 147019584 147020771 L1P1 4361 - 634 1820 35227 1046 2 1 139 chain 11647 chr7 159138663 + 147035155 147035366 THE1D 372 - 34 263 153708 92 12 27 25 31 28 5 0 2 27 0 4 19 chain 21664 chr7 159138663 + 147038273 147038536 L1PA7 6471 + 6203 6466 121526 263 chain 29440 chr7 159138663 + 147043227 147043545 AluYb8 318 - 0 318 86895 318 chain 160267 chr7 159138663 + 147050255 147052190 L1PA7 6471 - 14 1964 23300 134 10 11 90 0 1 425 0 3 89 1 4 70 1 6 989 0 1 85 0 1 41 chain 76167 chr7 159138663 + 147052275 147053212 L1P3 4156 + 3196 4137 45384 389 0 3 15 0 1 210 0 3 290 2 0 7 2 1 22 chain 4076 chr7 159138663 + 147075153 147075200 MADE1 96 + 49 96 206248 47 chain 20096 chr7 159138663 + 147080607 147080877 L1PA8 5853 + 5588 5853 126841 22 3 1 68 1 0 13 0 1 15 1 0 32 2 1 19 1 0 93 chain 20338 chr7 159138663 + 147156980 147157226 L1PA7 6471 + 6206 6452 126114 107 3 0 5 0 3 131 chain 23871 chr7 159138663 + 147179538 147179814 AluY 311 + 10 284 111075 122 2 0 152 chain 6622 chr7 159138663 + 147198727 147198808 MER47A 366 + 187 268 180292 81 chain 122740 chr7 159138663 + 147227818 147229692 THE1A-int 1579 - 14 1579 30145 323 13 0 10 0 13 71 10 11 575 0 1 65 314 0 221 0 1 155 3 6 60 1 0 53 chain 28587 chr7 159138663 + 147229692 147230047 THE1A 353 - 0 353 90798 58 1 0 185 2 1 109 chain 44688 chr7 159138663 + 147240056 147240567 MER9a1 513 - 0 511 63390 511 chain 156961 chr7 159138663 + 147244751 147246656 L1PA8A 6298 - 7 1921 23729 318 0 1 90 0 2 396 1 0 313 1 2 208 0 1 128 10 14 218 0 1 222 chain 25332 chr7 159138663 + 147256991 147257283 AluSp 311 + 11 305 103059 43 0 2 249 chain 21025 chr7 159138663 + 147268214 147268450 L1PA3long 6157 - 0 234 123835 175 1 0 53 1 0 6 chain 28850 chr7 159138663 + 147295270 147295639 L1PA8 5853 - 0 362 89670 93 1 0 15 2 1 55 1 0 10 1 0 70 3 1 46 1 0 71 chain 27727 chr7 159138663 + 147295768 147296098 THE1C 375 + 0 332 93945 186 0 1 131 0 1 13 chain 76482 chr7 159138663 + 147299596 147300454 L1PA3long 6157 - 13 875 45064 457 3 7 398 chain 94083 chr7 159138663 + 147300454 147301478 L1PA3long 6157 + 4286 5309 38327 745 1 0 278 chain 28653 chr7 159138663 + 147305814 147306191 LTR7 482 - 12 482 90512 164 0 1 41 11 53 60 0 50 101 chain 116210 chr7 159138663 + 147320242 147322062 L1MA2 4263 + 2313 4113 32371 14 1 2 83 1 0 227 10 7 60 0 1 64 37 36 104 15 4 134 1 2 81 0 1 32 0 2 101 0 5 161 5 1 12 0 5 87 3 0 17 2 1 15 37 34 41 19 18 18 0 1 125 4 1 23 30 33 71 21 20 9 1 0 92 7 0 16 0 1 30 1 0 8 chain 50587 chr7 159138663 + 147325506 147331333 L1PB2 3958 + 25 3838 58593 27 1 0 4 18 14 14 5 0 16 0 8 31 7 5 28 8 0 8 1 0 44 9 6 195 10 9 17 1 0 9 13 0 167 2 1 59 4803 2824 34 1 0 11 4 7 49 6 5 62 1 0 76 23 20 63 chain 8274 chr7 159138663 + 147330523 147330639 THE1C-int 1605 + 1481 1598 169550 51 7 8 58 chain 15895 chr7 159138663 + 147333531 147333780 L1PA8 5853 - 0 244 138668 92 2 1 19 2 1 36 23 21 4 1 0 70 chain 25602 chr7 159138663 + 147345549 147345901 THE1B 368 - 2 368 101718 115 25 37 13 0 3 29 1 0 169 chain 27731 chr7 159138663 + 147355066 147355367 AluYa5 310 + 0 300 93932 123 1 0 177 chain 29120 chr7 159138663 + 147396363 147396694 L1PA7 6471 + 6132 6462 88456 7 1 0 323 chain 4815 chr7 159138663 + 147406443 147406503 ERV3-16A3_LTR 481 + 416 476 197179 60 chain 66958 chr7 159138663 + 147409220 147409995 L1PA5 6144 + 5367 6143 49666 16 1 0 422 0 1 28 1 2 307 chain 14894 chr7 159138663 + 147423820 147424018 MER75B 242 + 42 242 141652 67 0 3 71 5 4 55 chain 530754 chr7 159138663 + 147429132 147435250 L1PA5 6144 - 1 6143 4112 147 0 1 11 1 0 178 0 1 431 4 7 201 1 2 51 0 1 199 1 14 241 0 1 309 0 4 1168 5 0 1021 0 1 1095 2 1 379 0 3 52 0 2 230 2 1 165 0 1 224 chain 130580 chr7 159138663 + 147498419 147499862 SVA_D 2077 - 3 2020 27948 522 0 351 109 0 183 259 0 40 553 chain 25225 chr7 159138663 + 147534197 147534555 THE1B 368 - 1 368 103610 124 35 45 29 1 0 169 chain 566632 chr7 159138663 + 147539683 147545715 L1HS 6032 - 0 6032 112 6032 chain 155753 chr7 159138663 + 147547259 147549004 L1PA5 6144 + 4383 6136 23884 350 5 0 560 0 1 517 0 11 21 0 1 292 chain 11830 chr7 159138663 + 147557064 147557206 THE1D 372 + 3 145 152908 142 chain 519250 chr7 159138663 + 147560025 147566197 L1PA6 6164 - 5 6164 5234 7 5 0 287 0 1 548 0 3 977 0 2 1064 0 6 467 0 4 322 4 0 142 24 0 514 0 1 615 0 2 193 6 7 430 1 0 398 7 8 161 chain 113353 chr7 159138663 + 147570746 147572244 THE1B-int 1605 - 5 1572 33263 106 0 7 188 3 0 118 15 14 152 2 1 434 17 14 106 1 65 115 0 6 241 chain 5517 chr7 159138663 + 147596008 147596097 L1MB1 2102 - 125 216 189866 37 14 16 38 chain 61496 chr7 159138663 + 147599521 147600521 L1PB1 5432 - 10 911 52119 18 1 0 13 1 0 21 1 0 24 2 0 15 13 10 24 14 1 60 1 0 11 9 8 44 7 5 9 2 0 3 2 0 10 1 0 8 1 0 24 1 0 5 76 7 479 12 14 88 chain 6755 chr7 159138663 + 147620950 147621034 MLT1C 463 + 345 429 179282 84 chain 15038 chr7 159138663 + 147648801 147649027 L1PA8 5853 + 5632 5853 141210 38 11 9 14 5 4 43 2 1 19 1 0 93 chain 7156 chr7 159138663 + 147665894 147666104 LTR54 533 - 0 214 176365 17 10 14 12 84 0 11 0 84 76 chain 15389 chr7 159138663 + 147681219 147681416 MER41A 554 - 279 477 140236 177 4 5 16 chain 56788 chr7 159138663 + 147684625 147685714 MER4E1 777 - 9 777 54662 126 335 0 93 6 0 8 2 0 4 0 1 169 0 1 18 0 23 179 2 4 32 0 1 83 2 0 7 4 0 19 chain 3432 chr7 159138663 + 147694325 147694364 LTR43 600 - 20 59 216536 39 chain 20190 chr7 159138663 + 147706195 147706460 MER47A 366 - 50 313 126558 12 2 0 251 chain 12946 chr7 159138663 + 147730467 147730659 L1PA8A 6298 - 7 201 148446 39 0 1 53 22 23 78 chain 187536 chr7 159138663 + 147760756 147763572 L1PB1 5432 - 888 4663 20289 451 2 3 6 1 0 114 6 8 163 352 1288 16 0 3 588 4 9 315 0 2 37 0 3 134 25 30 143 1 3 236 0 1 222 chain 30237 chr7 159138663 + 147778356 147778784 MLT2A1 477 + 0 473 84092 170 4 1 24 3 2 103 0 1 43 1 11 40 6 44 34 chain 44428 chr7 159138663 + 147797872 147798385 L1PA4 6152 + 5641 6151 63662 262 3 0 248 chain 31976 chr7 159138663 + 147799910 147800409 MER4A1_ 611 - 20 586 80894 47 11 9 223 27 91 5 0 1 49 6 17 26 9 1 28 4 5 64 chain 24751 chr7 159138663 + 147806465 147806757 AluSp 311 - 1 293 106164 292 chain 45057 chr7 159138663 + 147806765 147807333 PABL_A 660 - 86 660 62983 225 21 26 182 0 1 140 chain 14613 chr7 159138663 + 147854021 147854315 MER51B 395 + 0 221 142544 33 18 6 48 26 2 7 36 0 89 1 0 36 chain 61608 chr7 159138663 + 147865129 147865804 L1PA4 6152 + 5466 6141 52075 675 chain 32294 chr7 159138663 + 147871846 147872324 L1PA8 5853 - 0 474 80370 70 0 1 22 1 0 19 6 5 38 22 20 70 2 0 44 5 4 44 3 4 90 1 2 41 chain 25295 chr7 159138663 + 147904913 147905196 AluYc3 301 + 6 287 103250 107 2 0 174 chain 24360 chr7 159138663 + 147921826 147922129 THE1C 375 - 72 375 108321 303 chain 24129 chr7 159138663 + 147925646 147925935 AluY 311 + 13 298 109590 113 4 0 172 chain 20761 chr7 159138663 + 147930919 147931230 MSTA 426 + 73 426 124748 35 16 40 88 6 4 56 1 21 109 chain 22500 chr7 159138663 + 147981261 147981614 THE1B 368 + 7 368 118027 101 7 9 59 0 2 7 16 8 8 0 1 8 0 4 14 7 15 63 5 4 58 chain 32311 chr7 159138663 + 147988339 147988800 MLT2A1 477 - 0 477 80351 37 43 61 168 1 0 5 0 1 25 1 2 7 3 0 171 chain 15530 chr7 159138663 + 147995562 147995770 MLT2A2 560 - 372 560 139802 148 22 2 38 chain 3361 chr7 159138663 + 148000194 148000232 THE1D 372 + 334 372 217866 38 chain 48670 chr7 159138663 + 148005683 148006244 L1PA7 6471 - 15 575 59980 138 1 0 422 chain 28533 chr7 159138663 + 148006514 148006918 LTR7 482 - 7 482 91032 108 1 2 57 13 45 38 0 1 109 8 46 48 1 0 21 chain 281303 chr7 159138663 + 148008832 148012264 HERVH-int 3825 - 0 3794 14573 376 7 1 9 7 13 33 1 0 55 8 218 570 0 1 108 13 11 118 1 0 308 0 4 221 0 1 174 0 1 179 0 1 642 1 0 27 0 150 24 1 0 10 1 0 40 1 0 44 24 0 9 1 27 81 4 5 20 9 8 305 chain 30240 chr7 159138663 + 148012303 148012707 LTR7 482 - 6 482 84085 184 0 31 36 0 1 109 8 46 32 4 6 31 chain 12000 chr7 159138663 + 148013303 148013447 L1PA5 6144 + 6006 6144 152195 132 6 0 6 chain 26361 chr7 159138663 + 148054152 148054513 THE1B 368 + 0 368 98569 128 0 3 38 1 0 29 0 3 8 1 5 15 6 5 8 1 0 126 chain 12152 chr7 159138663 + 148059314 148059460 THE1D 372 - 215 365 151601 18 0 4 128 chain 123471 chr7 159138663 + 148060727 148062206 LTR12C 1709 + 0 1709 29892 212 0 9 88 0 1 4 1 0 336 0 119 58 11 10 274 1 0 5 3 1 107 0 4 168 0 102 211 chain 22998 chr7 159138663 + 148072833 148073114 AluSg7 307 + 29 303 115632 97 7 0 177 chain 26521 chr7 159138663 + 148084887 148085235 MER41A 554 + 0 436 97969 72 0 89 34 0 1 112 8 6 122 chain 39564 chr7 159138663 + 148085243 148085683 L1PA3long 6157 - 5 445 69944 440 chain 43038 chr7 159138663 + 148085683 148086247 L1P1 4361 - 3278 4360 65368 256 18 21 6 3 0 93 12 5 85 0 525 91 chain 27495 chr7 159138663 + 148086295 148086632 THE1B 368 + 16 368 94664 28 0 15 60 0 1 49 1 0 199 chain 24274 chr7 159138663 + 148089181 148089463 AluSc 308 - 26 308 108817 282 chain 28173 chr7 159138663 + 148106862 148107160 AluYk11 308 + 1 299 92394 298 chain 108562 chr7 159138663 + 148123319 148124645 LTR12C 1709 + 0 1709 34545 260 1 2 388 0 278 56 0 1 127 1 0 4 4 2 106 0 4 212 0 1 22 43 13 40 1 132 61 chain 142400 chr7 159138663 + 148124645 148127039 L1P3 4156 + 1815 3582 25742 180 0 1 327 3 4 199 323 0 37 0 2 67 1 4 81 2 0 169 0 4 501 321 0 86 0 2 22 0 2 38 0 4 37 chain 65330 chr7 159138663 + 148127357 148128304 L1PA7 6471 + 5629 6458 50410 75 1 2 304 0 2 137 122 0 131 8 7 18 17 19 134 chain 23490 chr7 159138663 + 148137691 148138020 L1MA4 2864 + 1860 2190 113172 49 10 15 88 3 1 14 1 0 91 1 0 72 chain 10654 chr7 159138663 + 148140945 148141092 THE1B 368 - 0 154 157589 56 7 6 66 0 8 18 chain 4051 chr7 159138663 + 148141823 148141871 LTR12C 1709 - 973 1021 206632 48 chain 3699 chr7 159138663 + 148150240 148150286 LTR37A 408 + 351 397 211953 46 chain 74035 chr7 159138663 + 148159327 148160321 MER11A 1151 + 8 1135 46492 77 0 91 54 0 4 60 4 0 149 0 1 94 0 1 144 5 7 53 0 4 60 2 3 25 17 48 37 0 1 60 13 14 140 chain 5495 chr7 159138663 + 148199481 148199543 LTR9B 643 - 581 643 190095 62 chain 24605 chr7 159138663 + 148206648 148206945 AluSc5 308 - 1 298 106968 297 chain 178600 chr7 159138663 + 148214475 148216636 L1PA8 5853 - 0 2170 21113 82 9 17 13 2 1 45 3 0 5 1 3 8 2 1 70 2 0 44 1 0 40 0 3 510 3 1 49 4 0 115 0 9 621 0 1 532 chain 33770 chr7 159138663 + 148216910 148217345 MER4A1 472 + 0 472 77984 19 6 12 61 5 15 118 0 21 226 chain 3471 chr7 159138663 + 148226942 148226980 MER103C 291 - 59 97 215806 38 chain 370018 chr7 159138663 + 148228105 148232203 L1PA5 6144 + 2027 6139 11095 511 0 1 1144 0 1 27 0 1 628 0 4 276 1 0 1360 0 9 137 1 0 13 chain 73271 chr7 159138663 + 148270580 148271522 L1PA8 5853 - 15 1027 46898 72 29 66 21 10 9 62 2 0 44 1 0 86 0 38 431 2 0 9 0 1 173 chain 19886 chr7 159138663 + 148276401 148276757 THE1B 368 - 0 361 127529 124 32 35 7 0 1 6 2 4 22 1 0 87 34 36 33 2 0 6 chain 30919 chr7 159138663 + 148278198 148278624 MLT2A1 477 - 24 477 82653 21 7 23 13 1 0 147 0 1 76 7 11 10 7 9 12 0 5 125 chain 4737 chr7 159138663 + 148279490 148279563 L1PB1 5432 - 12 82 198059 16 2 1 12 1 0 21 1 0 20 chain 43746 chr7 159138663 + 148283462 148283992 MER41A 554 + 0 534 64510 443 0 4 87 chain 12453 chr7 159138663 + 148301526 148301790 L1PB1 5432 + 5178 5422 150450 42 2 1 14 2 1 34 1 4 7 1 0 15 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 5 4 14 chain 32486 chr7 159138663 + 148307271 148307722 MLT2A1 477 + 0 477 80056 15 0 4 109 0 1 40 4 1 215 23 43 39 0 4 6 chain 4519 chr7 159138663 + 148314290 148314348 THE1D 372 - 315 372 200569 53 1 0 4 chain 4807 chr7 159138663 + 148318587 148318647 MER21B 843 + 255 315 197274 60 chain 9432 chr7 159138663 + 148318752 148318899 LTR8 732 - 0 145 163391 29 5 1 76 9 11 28 chain 12720 chr7 159138663 + 148329802 148330014 MSTA 426 + 0 216 149374 76 0 1 23 3 4 22 28 34 46 4 0 10 chain 29815 chr7 159138663 + 148336188 148336545 THE1A 353 - 0 353 85394 242 4 0 111 chain 18571 chr7 159138663 + 148350071 148350420 THE1B 368 + 0 357 131304 100 22 23 54 65 73 56 7 6 45 chain 16761 chr7 159138663 + 148363515 148363754 MER30 238 + 0 238 136223 80 1 0 21 8 0 11 2 10 116 chain 69906 chr7 159138663 + 148376069 148377097 L1MA3 4352 + 61 1125 48433 19 0 1 72 0 7 5 4 0 9 2 0 5 10 15 46 0 3 63 0 1 55 0 2 226 0 1 25 7 11 21 0 32 92 2 0 16 0 3 63 1 0 4 0 1 8 2 0 7 1 0 23 4 0 164 6 0 16 5 4 30 1 0 14 chain 5429 chr7 159138663 + 148388665 148388727 MLT2D 439 + 47 109 190714 62 chain 3261 chr7 159138663 + 148392218 148392284 MIR 256 - 105 168 219769 13 20 17 33 chain 3193 chr7 159138663 + 148415515 148415550 L1MB8 1703 - 129 164 221054 35 chain 29463 chr7 159138663 + 148447394 148447754 L1PA6 6164 - 2 359 86781 8 2 0 299 5 4 46 chain 32621 chr7 159138663 + 148476823 148477218 MLT2A1 477 + 0 399 79815 140 0 1 28 1 5 149 1 0 76 chain 3284 chr7 159138663 + 148502934 148502969 MER30 238 - 144 179 219283 35 chain 19375 chr7 159138663 + 148507789 148508014 AluSp 311 + 11 308 129007 56 0 72 169 chain 4766 chr7 159138663 + 148518107 148518164 U7 62 + 4 61 197741 57 chain 24201 chr7 159138663 + 148524931 148525220 AluY 311 + 4 293 109202 119 1 0 9 0 1 160 chain 28912 chr7 159138663 + 148530268 148530577 AluYg6 310 + 0 309 89407 309 chain 8243 chr7 159138663 + 148550088 148550227 MER1B 344 - 0 141 169717 13 0 1 45 18 23 42 4 0 17 chain 24170 chr7 159138663 + 148551260 148551545 AluY 311 + 5 300 109374 78 0 9 40 0 1 167 chain 9502 chr7 159138663 + 148558099 148558311 MER2 342 - 7 206 163062 19 10 0 13 7 8 25 6 8 62 4 0 15 6 5 15 15 14 15 chain 23669 chr7 159138663 + 148582068 148582349 AluSp 311 - 16 303 112207 12 4 0 119 0 1 55 0 9 91 chain 26305 chr7 159138663 + 148582593 148582886 AluY 311 + 5 298 98809 90 2 1 36 0 1 165 chain 24385 chr7 159138663 + 148595230 148595524 AluY 311 + 8 295 108160 115 13 6 166 chain 7864 chr7 159138663 + 148632925 148633079 MER2 342 - 23 178 171907 19 53 54 82 chain 6665 chr7 159138663 + 148638579 148638654 HY5 76 + 0 75 179944 75 chain 29386 chr7 159138663 + 148639932 148640240 AluYb8 318 - 10 318 87135 308 chain 21898 chr7 159138663 + 148643354 148643635 AluSx4 309 + 9 286 120633 19 2 1 13 3 0 244 chain 132608 chr7 159138663 + 148645991 148647539 LTR12C 1709 + 0 1709 27500 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 54 0 1 426 chain 8823 chr7 159138663 + 148660406 148660499 HY4 93 + 0 93 166535 93 chain 13422 chr7 159138663 + 148665841 148666188 MSTB 430 + 0 391 146615 20 0 4 55 2 1 32 119 153 42 1 0 4 14 21 41 0 1 17 chain 9605 chr7 159138663 + 148680846 148680947 HY3 101 + 0 101 162571 101 chain 10551 chr7 159138663 + 148684229 148684340 HY1 111 - 0 111 158042 111 chain 8555 chr7 159138663 + 148689512 148689619 L1MB5 1630 + 1339 1445 167990 53 1 0 53 chain 2903 chr7 159138663 + 148716918 148716953 Charlie1a 1436 + 1316 1351 226995 35 chain 4872 chr7 159138663 + 148730154 148730238 U6 107 + 11 86 196565 7 0 1 9 12 0 51 0 2 5 chain 119292 chr7 159138663 + 148734965 148736352 LTR12C 1709 - 0 1709 31295 481 0 4 107 2 0 6 1 319 392 0 1 136 0 1 262 chain 3061 chr7 159138663 + 148746070 148746205 MLT1F2 592 + 223 424 223805 23 7 6 16 69 136 20 chain 7216 chr7 159138663 + 148748315 148748405 MER30 238 - 1 94 175960 38 1 4 51 chain 30089 chr7 159138663 + 148748405 148748844 MLT2A1 477 + 0 477 84534 169 4 1 9 0 1 14 5 11 96 5 13 69 0 2 10 8 0 10 3 35 37 chain 242426 chr7 159138663 + 148748844 148754659 HERVL-int 5654 + 0 5654 16646 101 0 6 49 2 1 254 0 4 110 350 0 174 0 1 8 1 2 116 7 8 36 0 5 163 340 4 82 2 0 330 1023 2464 25 1 0 53 6 8 88 1 3 174 1 9 163 0 13 52 328 0 46 1 0 55 8 0 290 0 6 193 304 2 14 13 0 110 1 2 54 0 1 85 0 3 37 1 0 21 341 28 201 chain 23116 chr7 159138663 + 148754981 148755295 MLT2A1 477 + 14 333 115058 114 6 7 34 7 11 153 chain 20976 chr7 159138663 + 148758428 148758727 AluSp 311 + 14 296 124007 16 19 8 87 2 0 105 10 6 60 chain 12476 chr7 159138663 + 148762087 148762234 AluSz6 309 + 134 281 150358 147 chain 102545 chr7 159138663 + 148781480 148783201 L1PA15 4387 - 267 1732 36121 16 1 0 79 2 16 12 0 3 18 4 22 20 2 1 44 7 1 76 0 2 56 0 5 476 0 3 102 317 0 12 0 11 116 0 4 79 17 26 87 1 0 28 1 0 24 2 4 122 chain 24384 chr7 159138663 + 148803040 148803334 AluSg7 307 - 4 297 108174 7 2 0 164 0 1 121 chain 8829 chr7 159138663 + 148817683 148817798 Tigger3a 397 + 158 303 166498 96 1 31 18 chain 29369 chr7 159138663 + 148818174 148818486 AluYa5 310 - 0 310 87207 184 2 0 126 chain 23535 chr7 159138663 + 148824520 148824838 AluY 311 + 4 301 112929 92 0 2 35 13 1 155 2 0 5 9 0 7 chain 24211 chr7 159138663 + 148826903 148827190 AluSp 311 - 23 311 109148 154 0 1 133 chain 16452 chr7 159138663 + 148830116 148830645 MER41A 554 - 310 543 137059 57 1 0 34 305 0 84 0 10 48 chain 16082 chr7 159138663 + 148845829 148846075 MER30 238 + 0 238 138107 103 23 7 43 7 12 31 0 3 39 chain 23161 chr7 159138663 + 148886494 148886783 AluSz 310 + 8 301 114849 44 1 5 172 0 2 53 2 0 17 chain 24405 chr7 159138663 + 148919752 148920037 AluSc 308 - 23 308 108047 285 chain 29187 chr7 159138663 + 148934040 148934480 MLT2A1 477 + 0 463 88112 18 1 3 119 0 1 28 4 1 102 19 9 104 13 41 20 0 1 5 0 4 7 chain 18634 chr7 159138663 + 148953223 148953492 MER1B 344 - 5 313 131122 24 0 1 29 17 20 107 3 6 47 0 32 42 chain 47932 chr7 159138663 + 148966763 148967291 L1PA4 6152 - 1 529 60535 528 chain 90857 chr7 159138663 + 148969688 148971410 L1MA3 4352 - 0 1364 39337 22 9 5 11 1 0 26 1 0 6 1 0 24 9 8 14 4 0 31 0 2 24 1 0 60 59 30 26 8 7 157 13 12 152 8 9 42 1 0 232 304 0 49 25 10 6 1 0 194 14 18 187 chain 7864 chr7 159138663 + 148976738 148976829 SVA_E 1901 - 0 88 171911 6 3 0 82 chain 45880 chr7 159138663 + 148976835 148977340 SVA_D 2077 - 275 956 62143 369 0 176 136 chain 25559 chr7 159138663 + 148998163 148998533 THE1B 368 + 0 368 101937 47 0 9 8 9 0 25 0 1 22 0 1 44 6 0 15 3 2 32 5 8 154 chain 6576 chr7 159138663 + 149007280 149007352 tRNA-Cys-TGY 72 + 0 72 180651 72 chain 46008 chr7 159138663 + 149009658 149010486 L1PA17 2846 - 162 982 62037 35 1 0 13 1 0 36 13 9 59 1 0 10 12 7 76 0 1 4 16 19 17 21 1 39 9 8 94 6 22 133 41 45 65 30 31 96 chain 24550 chr7 159138663 + 149012168 149012451 AluYc3 301 - 7 290 107256 283 chain 23479 chr7 159138663 + 149017427 149019364 MSTA 426 - 0 425 113222 118 0 1 33 3 0 5 38 42 13 6 8 22 1539 21 59 0 1 36 1 2 64 chain 6912 chr7 159138663 + 149028219 149028291 tRNA-Cys-TGY 72 + 0 72 178101 72 chain 56529 chr7 159138663 + 149029652 149030282 SVA_B 1603 - 0 670 54837 613 0 40 17 chain 76411 chr7 159138663 + 149032404 149033699 L1PB1 5432 + 4215 5418 45256 27 7 8 130 0 1 228 0 4 15 3 0 75 6 8 91 1 6 5 2 0 31 11 12 246 84 12 24 1 0 4 7 6 10 9 5 5 2 0 50 21 18 45 1 0 15 1 0 4 17 9 17 25 20 24 1 0 21 1 0 13 1 0 14 chain 513104 chr7 159138663 + 149035961 149043031 L1PA5 6144 - 0 6131 5874 219 539 0 631 1 0 318 1 0 354 1 0 4 0 1 264 5 9 213 0 1 247 0 6 204 0 3 288 455 10 93 1 0 77 0 1 7 1 0 237 0 1 408 1 6 62 0 4 162 2 1 104 0 7 646 5 6 381 9 0 610 14 15 141 5 16 246 2 16 112 chain 21350 chr7 159138663 + 149036263 149036501 L1PA5 6144 - 306 546 122683 152 0 2 86 chain 17484 chr7 159138663 + 149036503 149036712 L1PA5 6144 - 0 209 134303 209 chain 40837 chr7 159138663 + 149039253 149039705 L1PA3long 6157 - 0 452 68122 452 chain 6239 chr7 159138663 + 149048266 149048341 L1MB3 1562 + 610 685 183254 75 chain 6406 chr7 159138663 + 149052765 149052837 tRNA-Cys-TGY 72 - 0 72 181985 72 chain 94900 chr7 159138663 + 149065634 149066694 L1PA4 6152 - 0 1065 38123 148 0 1 6 1 6 29 1 0 875 chain 17507 chr7 159138663 + 149066732 149067018 MER31A 484 + 188 484 134247 10 3 0 76 1 4 27 2 1 79 10 7 29 11 24 30 0 1 8 chain 6781 chr7 159138663 + 149072849 149072921 tRNA-Cys-TGY 72 - 0 72 179106 72 chain 6821 chr7 159138663 + 149074601 149074672 tRNA-Cys-TGY 72 - 1 72 178788 71 chain 65738 chr7 159138663 + 149105333 149106355 L1PB1 5432 - 12 1004 50228 16 1 0 11 6 5 18 1 0 24 2 0 14 1 0 5 9 7 23 13 1 15 1 0 45 6 5 10 2 1 53 2 0 8 5 1 12 1 0 6 3 2 24 13 11 274 3 4 195 5 1 7 0 1 41 8 13 139 chain 79290 chr7 159138663 + 149107677 149108660 L1PREC2 3366 - 883 1871 43917 122 0 4 779 0 1 82 chain 48992 chr7 159138663 + 149108685 149109478 L1PA14 3548 + 2704 3435 59759 59 1 0 157 0 1 17 3 1 10 10 8 43 2 0 5 2 0 105 2 0 5 5 3 13 2 0 6 1 0 84 1 0 50 36 0 64 1 0 6 4 0 38 4 2 12 5 3 19 1 0 20 chain 6312 chr7 159138663 + 149112228 149112300 tRNA-Cys-TGY 72 - 0 72 182703 72 chain 22919 chr7 159138663 + 149180421 149180720 AluSc 308 + 0 304 116015 44 9 13 221 0 1 25 chain 3577 chr7 159138663 + 149198599 149198699 LTR1 825 - 0 99 214011 20 44 43 36 chain 296965 chr7 159138663 + 149209093 149213285 L1PB1 5432 - 9 4183 13589 5 2 0 14 1 0 12 1 0 22 1 0 26 2 0 12 1 0 5 3 1 14 13 5 7 2 0 4 1 0 15 1 0 44 1 0 16 2 1 52 2 0 9 2 0 3 2 0 18 1 0 21 16 14 109 3 1 187 0 6 144 0 1 10 0 1 4 1 0 8 7 4 46 0 1 31 1 0 436 0 4 168 1 4 6 3 0 196 15 0 7 12 20 277 17 18 175 2 0 214 14 18 113 0 3 57 3 0 5 10 9 208 1 2 115 10 1 111 0 1 166 0 5 284 0 4 249 0 5 71 0 6 182 4 0 8 1 5 44 0 1 103 chain 29335 chr7 159138663 + 149236669 149236975 AluYb8 318 + 0 306 87371 306 chain 6528 chr7 159138663 + 149243630 149243702 tRNA-Cys-TGY 72 + 0 72 181034 72 chain 172977 chr7 159138663 + 149250629 149252940 SVA_D 2077 + 19 2064 21710 5 0 2 8 0 2 14 1 7 635 0 40 184 2 1 26 19 6 85 2 4 206 275 0 140 1 0 4 24 0 13 4 0 58 0 1 8 0 1 289 2 0 306 chain 14514 chr7 159138663 + 149251816 149252091 SVA_D 2077 + 1017 1117 72214 17 177 2 81 chain 7608 chr7 159138663 + 149251854 149252010 SVA_D 2077 + 1312 1438 137377 35 1 0 37 1 0 4 50 22 28 chain 4077 chr7 159138663 + 149251932 149251982 SVA_D 2077 + 1487 1537 144489 50 chain 5967 chr7 159138663 + 149253801 149253873 tRNA-Cys-TGY 72 + 0 72 185535 72 chain 4719 chr7 159138663 + 149255132 149255198 tRNA-Cys-TGY 72 + 0 65 198300 24 2 1 40 chain 18176 chr7 159138663 + 149269787 149270049 LTR10E 629 + 0 264 132394 20 1 0 37 0 2 6 2 1 86 15 17 95 chain 43720 chr7 159138663 + 149270053 149270541 L1PA4 6152 + 5660 6151 64542 92 0 3 396 chain 537134 chr7 159138663 + 149270910 149277032 L1PA5 6144 - 3 6144 3296 45 0 3 299 2 0 495 0 5 49 5 6 1252 0 5 373 0 2 864 1 4 433 2 0 1363 0 4 939 chain 6781 chr7 159138663 + 149281815 149281887 tRNA-Cys-TGY 72 + 0 72 179105 72 chain 6790 chr7 159138663 + 149286163 149286235 tRNA-Cys-TGY 72 - 0 72 179033 72 chain 5361 chr7 159138663 + 149292315 149292376 tRNA-Cys-TGY 72 - 11 72 191427 61 chain 49609 chr7 159138663 + 149293790 149294415 L1P3 4156 - 2836 3460 59312 59 7 8 68 2 1 334 1 0 154 chain 6181 chr7 159138663 + 149295045 149295117 tRNA-Cys-TGY 72 + 0 72 183738 72 chain 18011 chr7 159138663 + 149299220 149299433 AluSp 311 - 40 253 132829 213 chain 6006 chr7 159138663 + 149305466 149305538 tRNA-Cys-TGY 72 + 0 72 185192 72 chain 24822 chr7 159138663 + 149309830 149310142 LTR14A 344 + 16 344 105759 37 1 0 35 8 17 61 0 8 170 chain 6650 chr7 159138663 + 149310155 149310227 tRNA-Cys-TGY 72 - 0 72 180098 72 chain 28031 chr7 159138663 + 149325431 149325770 MER4A1 472 - 133 472 92887 339 chain 6912 chr7 159138663 + 149332777 149332849 tRNA-Cys-TGY 72 + 0 72 178100 72 chain 6519 chr7 159138663 + 149344045 149344117 tRNA-Cys-TGY 72 - 0 72 181098 72 chain 21208 chr7 159138663 + 149345785 149346114 LTR17 781 - 455 781 123188 40 41 42 14 1 0 51 1 0 23 1 0 100 1 0 56 chain 93659 chr7 159138663 + 149346116 149347282 HERVK9-int 4720 - 3521 4683 38456 215 1 0 103 3 0 177 0 6 524 17 16 26 4 3 5 1 0 33 0 1 32 1 0 4 8 5 12 chain 38835 chr7 159138663 + 149348571 149349061 MER9a3 513 - 0 506 70972 79 0 1 173 5 4 78 0 1 66 1 2 65 0 12 12 0 2 11 chain 155437 chr7 159138663 + 149349921 149352349 L1MA3 4352 + 1875 4345 23929 56 2 1 33 0 2 168 7 8 51 0 1 13 0 1 104 1 0 37 1 2 10 4 8 143 10 5 32 2 0 37 3 4 94 0 1 347 3 11 211 0 1 20 0 1 72 46 48 81 4 1 73 54 9 47 7 34 74 0 81 229 3 0 33 82 61 35 7 11 69 4 0 19 6 4 23 3 2 5 1 0 26 21 16 15 chain 7728 chr7 159138663 + 149354632 149354750 L1PB 1623 + 1323 1453 172725 17 8 20 44 0 1 41 1 0 7 chain 139087 chr7 159138663 + 149355117 149358400 L1PBa 3878 - 145 2861 26279 17 2 1 190 1 5 16 1347 773 20 5 0 182 33 37 34 0 1 136 4 0 292 0 1 21 5 6 180 1 2 205 1 0 58 2 0 158 1 12 38 11 12 100 16 0 8 0 12 19 0 1 4 1 0 175 chain 6181 chr7 159138663 + 149361914 149361986 tRNA-Cys-TGY 72 + 0 72 183737 72 chain 33800 chr7 159138663 + 149368688 149369121 LTR17 781 + 277 754 77938 6 2 0 9 0 2 33 1 0 250 0 1 117 2 46 13 chain 185124 chr7 159138663 + 149370980 149373218 HERV17-int 4347 + 12 4347 20489 10 0 1 4 1 0 52 1 0 36 2 0 4 0 1 19 1 0 59 24 24 105 0 430 716 1 2 282 2 0 313 0 1671 606 chain 16491 chr7 159138663 + 149380637 149380984 MER41-int 2638 - 2136 2454 136957 7 0 1 33 1 0 12 19 4 98 3 1 41 1 0 5 13 10 35 55 47 24 chain 22928 chr7 159138663 + 149384344 149384672 MER41B 635 - 284 617 115977 20 4 5 63 15 18 113 5 6 108 chain 9855 chr7 159138663 + 149385463 149385634 LTR56 451 - 127 296 161313 19 12 16 14 9 5 96 2 0 19 chain 6446 chr7 159138663 + 149388272 149388343 tRNA-Cys-TGY 72 - 1 72 181673 71 chain 76134 chr7 159138663 + 149394509 149395481 MER11A 1151 + 0 1151 45399 69 0 98 63 1 0 58 10 6 146 0 1 97 0 1 145 5 6 118 0 81 31 0 1 60 17 18 152 chain 6912 chr7 159138663 + 149404759 149404831 tRNA-Cys-TGY 72 + 0 72 178099 72 chain 4550 chr7 159138663 + 149414293 149414485 MER68B 564 - 331 524 200219 51 120 121 21 chain 19538 chr7 159138663 + 149436913 149437271 THE1B 368 - 0 368 128545 56 1 2 4 1 0 63 21 19 10 0 1 4 1 0 4 26 36 83 20 22 64 chain 3052 chr7 159138663 + 149481464 149481530 MIRc 230 - 98 166 223954 32 19 21 15 chain 24821 chr7 159138663 + 149636081 149636368 AluSp 311 - 24 311 105764 287 chain 23347 chr7 159138663 + 149695494 149695840 THE1C 375 - 25 375 113939 127 8 11 25 1 2 46 0 4 10 0 1 50 19 14 60 chain 54469 chr7 159138663 + 149718570 149719471 L1PB1 5432 - 2 866 56051 4 1 0 4 1 0 20 2 1 9 2 1 21 1 0 24 3 1 13 3 1 5 1 0 14 9 0 16 3 0 16 2 1 43 22 20 47 17 11 11 2 1 10 2 0 21 5 0 8 1 4 81 7 9 385 3 0 62 chain 4217 chr7 159138663 + 149727310 149727367 MER3 215 - 0 53 204321 37 4 0 16 chain 40281 chr7 159138663 + 149731237 149731822 HERVE-int 4064 - 1362 1946 68902 104 11 9 195 1 0 5 7 8 48 0 2 109 65 64 40 chain 46523 chr7 159138663 + 149733315 149733909 HERVE-int 4064 - 1359 1946 61575 311 1 0 5 0 1 166 23 16 88 chain 23554 chr7 159138663 + 149735241 149735539 HERVE-int 4064 - 1359 1670 112829 238 0 7 6 16 22 38 chain 4959 chr7 159138663 + 149735540 149735600 HERVE-int 4064 - 1670 1731 195593 6 0 1 54 chain 13431 chr7 159138663 + 149735600 149735805 HERVE-int 4064 - 1733 1946 146571 120 6 5 23 16 25 40 chain 47309 chr7 159138663 + 149737218 149737807 HERVE-int 4064 - 1359 1946 60961 112 1 2 380 16 13 80 chain 44421 chr7 159138663 + 149737956 149738553 HERVE-int 4064 - 1350 1946 63672 320 1 0 5 0 1 177 56 55 38 chain 47785 chr7 159138663 + 149739742 149740331 HERVE-int 4064 - 1359 1946 60628 112 1 2 380 16 13 80 chain 10247 chr7 159138663 + 149740480 149740600 HERVE-int 4064 - 1350 1470 159389 120 chain 29202 chr7 159138663 + 149788789 149789105 AluY 311 + 0 311 88036 126 5 0 185 chain 529627 chr7 159138663 + 149813883 149820329 L1PA7 6471 + 9 6466 4232 259 0 1 140 1 2 1055 0 3 699 8 6 465 0 2 12 1 4 30 2 1 4 0 1 804 0 1 145 2 1 192 2 0 120 0 1 253 0 2 184 0 5 224 1 0 15 1 0 339 1 0 82 0 5 407 0 5 16 37 5 22 0 15 78 0 3 519 0 1 64 0 2 106 1 2 106 0 1 14 1 0 34 chain 23527 chr7 159138663 + 149829535 149830014 L1PA16 3655 + 2934 3416 112978 118 132 137 11 11 10 67 9 6 5 0 2 126 chain 5209 chr7 159138663 + 149831230 149831295 L1PA4 6152 + 6076 6141 192920 65 chain 33487 chr7 159138663 + 149835861 149836299 MER1A 529 + 99 529 78428 302 1 0 59 8 1 68 chain 7054 chr7 159138663 + 149837478 149837641 Tigger1 2417 + 1942 2107 177076 21 0 1 26 60 61 56 chain 35600 chr7 159138663 + 149837812 149838297 Tigger1 2417 + 433 913 75415 50 22 19 258 5 0 107 0 3 43 chain 29776 chr7 159138663 + 149846433 149846794 L1PA5 6144 - 2 361 85557 7 4 0 248 0 2 102 chain 18278 chr7 159138663 + 149848769 149848978 L1PA3long 6157 + 5941 6157 132133 71 0 7 138 chain 98442 chr7 159138663 + 149849029 149850160 L1P1 4361 - 20 1150 37176 12 2 1 23 1 0 155 1 0 428 0 1 348 0 1 161 chain 106200 chr7 159138663 + 149850165 149851322 L1PA3long 6157 + 5000 6157 35210 1157 chain 34440 chr7 159138663 + 149858318 149858717 L1PA5 6144 - 13 413 77009 319 1 2 79 chain 11025 chr7 159138663 + 149858721 149858848 L1PA5 6144 + 5600 5727 156111 127 chain 25486 chr7 159138663 + 149869295 149869649 THE1A 353 - 0 353 102290 135 3 0 5 4 7 93 7 6 107 chain 120929 chr7 159138663 + 149869649 149871245 THE1A-int 1579 - 0 1579 30718 609 0 1 292 12 36 21 78 26 79 0 10 505 chain 28338 chr7 159138663 + 149871245 149871601 THE1A 353 - 0 353 91805 92 2 0 151 1 0 110 chain 162175 chr7 159138663 + 149894970 149896715 SVA_F 1814 + 9 1814 23039 871 1 0 22 0 64 211 1 0 10 1 0 617 1 0 10 chain 9143 chr7 159138663 + 149937522 149937652 L1PA8 5853 + 5708 5836 164845 32 2 1 19 2 1 75 chain 45594 chr7 159138663 + 149968288 149968836 L1PA7 6471 - 10 561 62409 139 12 15 5 0 1 5 1 0 386 chain 25925 chr7 159138663 + 149989589 149989885 AluSp 311 - 11 311 100315 46 0 1 90 0 3 160 chain 31745 chr7 159138663 + 150004328 150004792 LTR7C 471 + 0 471 81254 157 0 3 205 51 54 20 1 2 30 chain 38548 chr7 159138663 + 150009905 150010354 LTR7C 471 + 0 449 71369 180 0 1 4 1 0 264 chain 24329 chr7 159138663 + 150010379 150010820 MER4B 649 - 202 649 108496 21 9 0 7 2 1 20 6 7 25 5 0 48 4 1 63 1 3 34 45 68 65 2 0 21 0 1 37 1 0 25 chain 20902 chr7 159138663 + 150015578 150015836 AluSx4 309 + 8 282 124268 198 2 18 58 chain 7798 chr7 159138663 + 150153276 150153457 MLT1D 503 - 0 201 172318 51 0 1 5 9 12 28 1 0 7 48 65 32 chain 30289 chr7 159138663 + 150158967 150159410 LTR7B 505 - 20 505 83963 10 0 1 20 14 13 78 1 0 83 29 0 28 6 68 69 0 10 105 chain 35580 chr7 159138663 + 150171811 150172196 L1PA2 6032 - 0 385 75433 385 chain 207503 chr7 159138663 + 150187316 150189697 L1PA5 6144 + 3711 6098 18680 923 0 2 21 0 1 877 1 2 189 0 2 370 chain 127144 chr7 159138663 + 150190393 150191804 L1PA3long 6157 - 0 1401 28782 155 1 0 205 9 0 1041 chain 84574 chr7 159138663 + 150191804 150192743 L1PA3long 6157 + 3794 4733 41689 939 chain 503232 chr7 159138663 + 150193332 150199331 L1PA6 6164 + 2 6152 6657 183 2 3 220 1 140 23 5 0 6 2 0 108 1 2 779 0 4 862 0 2 850 0 1 4 0 1 194 0 3 504 5 4 9 0 2 46 0 1 412 0 4 946 1 0 28 0 1 58 1 0 613 4 5 132 chain 61632 chr7 159138663 + 150202798 150203489 SVA_D 2077 - 0 867 52065 11 2 0 509 0 2 140 1 177 28 chain 8850 chr7 159138663 + 150204275 150204376 Tigger1 2417 + 1745 1846 166376 101 chain 7544 chr7 159138663 + 150204382 150204553 L1PB1 5432 + 5249 5404 173907 32 1 0 15 1 0 6 1 0 12 30 18 14 2 0 7 0 3 14 1 0 23 2 1 10 chain 73882 chr7 159138663 + 150219832 150220881 MER11C 1089 - 26 1089 46570 20 1 0 5 0 1 117 1 0 56 31 32 87 7 8 38 1 0 4 1 5 118 1 0 4 34 33 149 1 0 56 9 13 61 0 9 247 chain 219083 chr7 159138663 + 150225266 150229323 L1PA14 3548 - 63 3458 17939 27 24 20 24 0 1 4 9 11 21 4 2 33 5 1 10 1 0 13 0 1 96 10 0 84 1 0 6 2 0 17 4 0 110 1 0 4 2 0 37 34 30 16 2 0 101 0 6 122 1 0 101 1 0 49 2 1 126 0 2 48 49 51 114 7 12 371 22 10 198 184 157 123 299 1 176 17 28 83 0 3 70 13 9 322 312 0 117 1 2 61 1 0 19 0 1 91 0 6 37 2 0 27 6 4 30 5 4 17 1 0 69 3 0 58 chain 464498 chr7 159138663 + 150240043 150245875 L1PA7 6471 + 623 6464 8239 224 1 0 4 0 1 149 0 1 4 1 0 259 16 14 1203 0 1 151 24 6 697 0 1 34 0 11 875 5 6 310 1 0 4 4 5 88 0 8 71 0 1 204 1 0 542 22 1 125 0 4 74 4 26 380 4 5 44 0 1 307 chain 89844 chr7 159138663 + 150254115 150255107 L1PA3long 6157 + 5162 6157 39707 644 0 1 200 1 3 147 chain 73691 chr7 159138663 + 150256489 150257580 MER11A 1151 + 0 1151 46684 93 0 91 43 0 4 56 14 10 29 0 4 48 12 13 49 5 6 92 5 0 145 5 7 120 0 26 26 43 0 22 18 0 36 0 1 34 6 5 23 0 1 167 chain 538373 chr7 159138663 + 150271568 150277709 L1PA4 6152 - 1 6151 3090 338 0 1 503 0 4 953 0 4 409 0 1 249 1 0 212 2 0 58 0 2 214 1 0 26 1 0 2073 0 1 210 0 2 315 2 1 574 chain 514353 chr7 159138663 + 150285135 150292259 L1PA7 6471 - 12 6439 5739 19 0 1 581 717 16 137 1 5 11 0 1 67 1 0 38 0 1 548 0 1 468 0 2 66 3 1 492 3 0 262 0 1 49 0 1 62 1 0 99 7 1 76 0 4 16 1 0 333 3 7 286 0 4 135 1 0 34 8 9 84 8 6 50 1 0 40 0 2 300 5 1 106 2 1 212 1 10 54 1 0 198 0 1 938 3 0 11 6 0 579 chain 10280 chr7 159138663 + 150285805 150285927 L1PA6 6164 + 5539 5661 159235 122 chain 42512 chr7 159138663 + 150285929 150286431 L1PA6 6164 + 5661 6160 65997 491 3 0 8 chain 497051 chr7 159138663 + 150294194 150300442 L1PA5 6144 + 5 6035 7006 130 10 24 62 1 0 4 15 16 95 44 23 26 0 1 313 2 3 447 0 3 83 0 1 670 0 5 74 0 1 664 0 3 513 0 1 515 1 0 195 1 2 1091 0 1 125 0 1 419 230 0 514 0 1 4 chain 15227 chr7 159138663 + 150299716 150299916 L1PA3long 6157 - 1 190 140698 4 1 0 7 3 0 136 7 0 42 chain 374537 chr7 159138663 + 150302692 150306993 L1P1 4361 + 1 4302 10938 3171 2 1 865 0 2 114 1 0 148 chain 29272 chr7 159138663 + 150308038 150308382 L1P1 4361 - 322 666 87683 194 2 1 4 0 1 144 chain 43088 chr7 159138663 + 150308404 150308885 L1PA4 6152 + 5662 6143 65304 68 1 0 34 0 1 378 chain 7758 chr7 159138663 + 150309409 150309503 L1P3 4156 + 1 95 172552 94 chain 94878 chr7 159138663 + 150313842 150315841 L1PA8 5853 - 6 1195 38130 66 0 8 13 1 0 9 807 0 7 1 0 56 2 1 8 2 1 70 2 0 44 1 0 555 2 0 250 4 0 52 0 2 47 chain 62682 chr7 159138663 + 150313948 150314738 L1P3 4156 - 827 1698 51519 18 0 2 364 0 1 63 0 97 150 19 0 176 chain 369728 chr7 159138663 + 150331734 150336494 L1PA7 6471 - 3 4801 11107 7 4 0 187 0 1 29 1 3 1208 20 6 42 1 0 208 3 0 37 0 1 142 3 2 16 0 1 4 1 0 12 0 1 32 0 4 92 0 1 420 26 18 26 6 7 131 0 1 85 0 26 161 4 8 14 16 6 356 15 17 321 1 0 268 4 16 213 4 5 229 7 9 196 0 3 26 0 1 95 1 5 7 0 13 79 chain 18075 chr7 159138663 + 150341933 150342175 L1PA4 6152 + 5898 6143 132661 101 7 0 7 4 13 103 0 1 20 chain 22012 chr7 159138663 + 150343973 150344355 MSTA 426 + 0 426 120172 100 29 59 43 10 4 11 3 9 12 3 0 56 2 0 6 18 37 89 chain 165361 chr7 159138663 + 150347973 150350203 L1PB1 5432 - 338 2602 22608 42 1 0 5 20 21 398 0 3 57 0 9 130 0 8 163 0 1 42 1 0 103 41 65 220 1 5 84 40 15 105 0 1 116 0 1 375 13 22 9 0 3 249 3 0 12 chain 23048 chr7 159138663 + 150352143 150352740 MER51E 476 - 0 476 115409 61 2 0 11 1 0 9 3 11 27 268 107 68 4 39 143 chain 77984 chr7 159138663 + 150369145 150370061 L1PA7 6471 - 10 932 44518 329 0 1 431 0 2 81 0 3 75 chain 112302 chr7 159138663 + 150370820 150372099 L1PA4 6152 - 0 1278 33590 386 4 1 39 0 1 747 0 1 103 chain 373667 chr7 159138663 + 150375474 150379847 L1P1 4361 + 10 4341 10971 109 0 14 901 1 0 355 0 9 9 9 0 172 0 1 255 59 0 99 0 2 1241 1 0 43 0 1 289 1 0 194 1 4 443 1 0 129 1 3 21 2 1 23 2 1 12 chain 9541 chr7 159138663 + 150402110 150402227 L1PA16 3655 + 3460 3578 162880 63 0 1 54 chain 541898 chr7 159138663 + 150403327 150409350 L1PA3long 6157 + 0 6156 2527 153 1 2 621 0 128 536 1 0 1819 0 4 683 0 1 2209 chain 176032 chr7 159138663 + 150409359 150411513 L1PA8 5853 + 3696 5850 21351 8 1 0 702 7 1 269 7 0 108 1 2 168 0 1 51 1 0 4 2 0 62 0 4 113 0 3 328 0 1 43 1 0 44 2 0 69 3 2 20 2 0 31 0 14 16 2 1 89 chain 146133 chr7 159138663 + 150457052 150458708 L1PA5 6144 - 7 1681 25141 1309 1 3 51 0 1 264 0 15 31 chain 7797 chr7 159138663 + 150458708 150458792 L1PA5 6144 + 3652 3736 171150 84 chain 64095 chr7 159138663 + 150458792 150459518 L1PA5 6144 + 3738 4458 50967 192 0 2 153 8 0 373 chain 19914 chr7 159138663 + 150468551 150468790 AluSp 311 + 64 305 127418 68 1 3 170 chain 111788 chr7 159138663 + 150470102 150472078 L1PA15 4387 + 2610 4242 33726 184 15 11 27 0 1 4 1 0 91 8 1 20 70 11 177 15 16 14 1 0 128 1 0 5 5 6 245 0 1 12 6 7 241 2 0 17 7 12 44 2 0 30 0 3 14 1 0 68 0 1 1 279 0 19 1 3 80 1 0 18 15 19 44 1 0 15 4 0 16 2 1 25 chain 495021 chr7 159138663 + 150504645 150510802 L1PA6 6164 + 0 6162 7120 157 0 378 6 379 0 246 0 17 10 17 0 230 1 6 112 0 2 1160 5 1 859 3 1 4 0 1 715 0 2 167 4 5 1233 0 4 836 3 0 10 chain 24561 chr7 159138663 + 150512342 150512641 AluY 311 + 5 303 107186 119 1 0 179 chain 25036 chr7 159138663 + 150531799 150532431 L1MA8 2339 + 1554 2150 104612 21 0 1 4 1 0 7 2 1 23 7 6 25 20 15 183 166 156 66 8 0 17 12 11 10 26 16 34 chain 85279 chr7 159138663 + 150540109 150541693 L1M1 2793 + 561 2042 41430 9 1 0 9 1 0 11 3 0 12 34 16 17 82 26 5 0 1 35 61 44 19 14 9 28 2 1 28 32 29 16 22 20 5 1 0 69 0 1 32 1 0 80 0 1 9 0 2 85 1 0 41 3 5 17 9 5 14 0 1 4 9 6 89 0 1 162 13 8 24 9 1 112 0 1 15 0 2 5 8 6 30 0 4 56 2 1 115 1 4 29 1 6 40 0 6 52 chain 181821 chr7 159138663 + 150579340 150581903 L1PB2 3958 + 1324 3838 20804 92 0 1 165 8 4 90 0 1 148 1 0 172 2 3 146 6 7 85 0 1 237 1 4 297 13 7 89 15 5 46 1 0 43 9 6 284 0 2 6 15 0 42 2 0 43 0 1 12 1 0 13 4 0 63 2 0 12 1 0 4 1 0 90 10 9 64 1 0 63 1 0 40 3 0 20 82 79 18 chain 29178 chr7 159138663 + 150584338 150584790 LTR7B 505 - 8 505 88156 40 17 16 79 1 0 42 1 2 36 0 2 28 37 68 69 0 10 8 0 3 94 chain 40171 chr7 159138663 + 150585185 150585711 MER9a2 513 - 0 513 69076 137 0 1 70 32 0 29 3 21 255 chain 8148 chr7 159138663 + 150587316 150587461 L1MB8 1703 + 903 1053 170239 17 0 4 9 7 8 76 7 0 7 1 8 21 chain 78822 chr7 159138663 + 150724100 150725056 LTR5_Hs 974 + 0 974 44138 255 18 0 23 0 2 79 0 5 160 1 0 14 7 18 205 0 19 194 chain 3903 chr7 159138663 + 150880141 150880189 MER33 330 + 15 63 208801 48 chain 11242 chr7 159138663 + 151016200 151016344 MER107 203 + 0 162 155254 46 0 1 37 1 18 60 chain 21231 chr7 159138663 + 151041819 151042102 AluSz 310 + 14 299 123097 21 20 22 242 chain 25941 chr7 159138663 + 151067630 151067917 L1PA3long 6157 - 0 286 100247 20 1 0 266 chain 48439 chr7 159138663 + 151119836 151120396 LTR6B 557 - 0 557 60157 161 0 1 125 2 0 222 2 0 48 chain 6866 chr7 159138663 + 151131906 151131989 MER6B 211 - 128 211 178452 83 chain 5047 chr7 159138663 + 151139864 151139944 L1MC1 2226 - 179 254 194658 54 2 0 13 3 0 8 chain 8484 chr7 159138663 + 151178067 151178192 MER85 139 - 0 135 168386 23 2 0 6 6 15 18 0 3 70 chain 8652 chr7 159138663 + 151211552 151211779 L1MB8 1703 + 1057 1285 167463 30 35 37 48 50 51 6 1 0 5 1 0 51 chain 26775 chr7 159138663 + 151230102 151230456 THE1D-int 1627 - 1255 1612 97068 65 19 18 17 0 1 158 0 3 95 chain 15805 chr7 159138663 + 151285744 151285958 THE1B 368 + 154 368 138943 15 1 0 31 0 2 104 7 6 56 chain 19101 chr7 159138663 + 151299756 151300080 THE1C 375 + 0 331 129813 15 2 0 159 65 74 83 chain 4619 chr7 159138663 + 151326270 151326330 MER58A 224 + 152 212 199421 60 chain 4409 chr7 159138663 + 151327570 151327669 MIR 256 - 70 185 201815 20 36 52 43 chain 23773 chr7 159138663 + 151335448 151335728 AluSc 308 + 10 289 111636 95 1 0 184 chain 3057 chr7 159138663 + 151352816 151352870 MIR 256 + 108 163 223854 30 11 12 13 chain 42387 chr7 159138663 + 151435476 151435946 MER9a1 513 + 0 471 66168 383 0 1 87 chain 2797 chr7 159138663 + 151465022 151465055 LTR16D2 557 - 11 45 228791 10 0 1 23 chain 7137 chr7 159138663 + 151475493 151475580 MSTB1 431 + 336 423 176494 87 chain 3397 chr7 159138663 + 151520484 151520522 MLT1C 463 + 51 89 217118 38 chain 24330 chr7 159138663 + 151578334 151578677 THE1B 368 - 0 368 108490 132 25 28 5 0 1 10 0 2 21 1 0 72 0 20 77 chain 3783 chr7 159138663 + 151608373 151608417 MSTB2 466 + 411 455 210624 44 chain 15820 chr7 159138663 + 151610617 151610937 THE1D 372 - 49 372 138897 48 2 3 26 63 68 6 0 6 88 33 24 54 chain 31486 chr7 159138663 + 151638012 151638516 MER51A 677 - 14 677 81666 44 5 4 102 1 0 54 9 7 32 0 189 32 11 1 22 17 0 19 8 6 64 0 2 48 0 1 36 chain 13706 chr7 159138663 + 151643439 151643592 L1PA5 6144 - 9 162 145577 153 chain 13479 chr7 159138663 + 151643598 151643744 L1PA5 6144 + 5831 5977 146418 146 chain 9230 chr7 159138663 + 151655413 151655565 LTR27B 950 - 205 356 164396 34 17 16 17 0 3 5 4 1 75 chain 23691 chr7 159138663 + 151670566 151670873 THE1D-int 1627 + 1312 1622 112081 58 8 0 113 0 5 105 0 6 23 chain 21519 chr7 159138663 + 151670878 151671233 THE1D 372 + 0 362 122075 161 56 63 69 0 1 43 7 6 19 chain 3345 chr7 159138663 + 151675536 151675602 MER5A1 166 + 46 112 218146 37 1 0 4 10 11 14 chain 17661 chr7 159138663 + 151693295 151693486 L1PA3long 6157 - 0 191 133804 191 chain 3439 chr7 159138663 + 151708058 151708172 MIR 256 - 57 172 216393 27 60 61 27 chain 65549 chr7 159138663 + 151724729 151725761 LTR12D 1347 - 0 942 50315 15 10 0 243 15 14 26 1 0 27 7 3 280 22 0 33 20 13 83 79 0 20 1 0 22 2 33 68 7 11 51 chain 40853 chr7 159138663 + 151727131 151727680 LTR13 1007 - 0 1007 68090 31 4 3 47 0 2 15 0 426 97 4 5 18 0 26 62 5 6 186 0 2 16 0 1 64 chain 407193 chr7 159138663 + 151727976 151732912 HERV9-int 5642 - 818 5638 9873 8 0 1 749 11 17 246 0 1 421 10 1 774 1 0 223 1 0 755 0 1 374 3 4 142 3 0 62 84 0 225 1 3 22 1 0 65 1 0 23 10 11 84 5 0 8 5 4 61 2 1 317 1 0 114 21 0 103 chain 36072 chr7 159138663 + 151735212 151735700 MER9a3 513 - 0 513 74798 79 0 1 96 0 21 58 14 13 67 0 1 70 10 11 81 0 2 13 chain 379055 chr7 159138663 + 151735700 151740575 HERVK9-int 4720 - 0 4586 10787 7 0 3 94 0 4 278 0 2 162 0 2 25 0 1 15 0 6 280 0 11 22 0 9 165 0 1 293 27 29 740 0 2 210 337 2 116 5 8 64 23 12 56 0 3 87 0 4 420 0 2 56 0 8 45 6 0 719 0 1 582 18 17 23 chain 13148 chr7 159138663 + 151738018 151738166 HERVK9-int 4720 - 932 1080 144762 148 chain 15941 chr7 159138663 + 151738172 151738355 HERVK9-int 4720 - 1087 1270 138011 183 chain 31873 chr7 159138663 + 151741129 151741568 MER9a3 513 - 0 461 81059 79 0 1 67 2 1 28 9 30 49 1 0 80 0 1 70 3 4 51 chain 3842 chr7 159138663 + 151751963 151752044 MLT2D 439 - 10 96 209758 38 26 31 17 chain 537939 chr7 159138663 + 151757575 151763665 L1PA5 6144 - 13 6144 3159 135 0 2 1426 0 1 165 0 1 57 0 8 469 0 1 496 0 1 123 0 3 73 1 0 113 0 1 366 0 3 304 0 4 261 0 2 297 0 1 551 0 7 103 0 3 126 0 2 509 0 3 420 1 0 94 chain 78487 chr7 159138663 + 151767877 151768926 MER11C 1089 - 25 1089 44278 144 1 0 39 1 0 17 0 1 125 0 1 38 6 9 91 68 67 146 1 0 65 0 4 30 0 1 30 0 9 247 chain 20374 chr7 159138663 + 151772615 151772896 AluSp 311 + 11 297 125978 42 6 1 61 2 5 10 7 14 153 chain 50478 chr7 159138663 + 151779271 151779853 LTR10C 591 - 0 591 58658 50 0 5 26 0 2 249 0 2 257 chain 38871 chr7 159138663 + 151786385 151786979 LTR10E 629 - 0 629 70913 7 1 0 11 47 63 15 6 5 149 1 0 55 1 0 27 1 27 96 19 16 158 chain 24610 chr7 159138663 + 151872407 151872714 L1PA7 6471 - 1 311 106934 9 2 0 36 7 11 105 0 1 148 chain 3539 chr7 159138663 + 151911483 151911524 MER6B 211 - 3 44 214718 41 chain 7989 chr7 159138663 + 151954837 151954939 MER30 238 - 1 100 171123 38 3 0 61 chain 4239 chr7 159138663 + 151963753 151963871 MER58C 217 - 9 139 204037 47 55 67 16 chain 11051 chr7 159138663 + 152016029 152016235 Tigger4b 360 + 2 232 156011 61 53 76 28 0 1 64 chain 74739 chr7 159138663 + 152016236 152017222 LTR13 1007 + 0 1007 46144 73 2 0 14 0 7 224 0 11 52 4 5 49 12 13 234 22 21 112 0 1 109 0 2 27 0 2 19 2 1 31 chain 6096 chr7 159138663 + 152020991 152021064 L1MA7 2200 + 1876 1949 184446 73 chain 5200 chr7 159138663 + 152021323 152021402 MADE1 96 - 0 96 193018 28 5 22 46 chain 9316 chr7 159138663 + 152041396 152041578 MER44B 551 - 299 491 163984 72 54 64 56 chain 15276 chr7 159138663 + 152043696 152043929 Tigger2b_Pri 1066 - 0 236 140554 44 6 2 13 5 7 92 6 11 67 chain 90279 chr7 159138663 + 152048669 152049738 MER11C 1089 + 0 1073 39545 58 0 1 533 0 1 83 1 0 26 0 2 182 0 1 186 chain 22671 chr7 159138663 + 152067022 152067291 AluY 311 + 8 295 117206 27 0 18 242 chain 21576 chr7 159138663 + 152111343 152111620 AluSp 311 + 12 289 121862 36 8 7 76 0 1 157 chain 35617 chr7 159138663 + 152117543 152118696 L1PA15 4387 + 3689 4366 75388 96 486 25 5 0 2 115 1 0 73 23 20 77 1 0 18 23 27 38 1 0 18 6 2 11 18 17 34 6 3 43 4 2 12 25 21 8 1 0 10 chain 10896 chr7 159138663 + 152117977 152118111 L1PA5 6144 + 6007 6140 156605 64 2 1 68 chain 16632 chr7 159138663 + 152140322 152140585 AluSp 311 + 21 278 136580 19 1 0 115 9 7 22 16 24 25 11 0 45 chain 5423 chr7 159138663 + 152155014 152155086 MSTB 430 + 358 429 190770 58 1 0 13 chain 24359 chr7 159138663 + 152165009 152165278 AluYc3 301 - 32 301 108326 269 chain 27037 chr7 159138663 + 152166634 152166983 THE1A 353 + 0 351 96153 27 4 0 83 1 0 108 0 7 126 chain 123115 chr7 159138663 + 152167300 152169507 THE1A-int 1579 + 0 1574 30003 170 0 1 132 6 7 129 316 0 32 9 10 792 342 0 53 0 1 154 0 21 72 chain 10401 chr7 159138663 + 152169512 152169711 THE1A 353 + 0 198 158689 77 58 57 64 chain 7754 chr7 159138663 + 152169712 152169815 THE1A 353 + 198 301 172582 35 0 3 5 3 0 60 chain 23721 chr7 159138663 + 152174515 152174806 AluSp 311 + 8 294 111926 23 0 1 94 6 0 168 chain 3490 chr7 159138663 + 152176863 152176907 MLT1B 390 + 329 374 215507 26 0 1 18 chain 25728 chr7 159138663 + 152196234 152197329 MER4A 717 + 0 458 101178 45 0 2 6 1 0 15 0 2 57 704 0 123 11 30 45 5 10 26 13 53 44 chain 28450 chr7 159138663 + 152212414 152213002 LTR12_ 688 - 0 688 91373 16 0 10 42 0 7 21 15 152 6 4 0 49 104 0 47 34 63 112 1 0 23 20 5 39 0 41 55 chain 14310 chr7 159138663 + 152220334 152220488 L1PA4 6152 + 5997 6151 143531 154 chain 22918 chr7 159138663 + 152228913 152229202 AluSp 311 + 10 306 116021 128 2 12 151 3 0 5 chain 102030 chr7 159138663 + 152235249 152236508 LTR12C 1709 - 0 1709 36254 84 17 16 67 0 102 212 0 4 107 2 0 6 1 319 156 0 1 328 3 18 13 1 14 262 chain 24190 chr7 159138663 + 152242970 152243256 AluSp 311 - 16 302 109272 286 chain 169373 chr7 159138663 + 152281731 152284304 SVA_E 1901 - 1 1898 22136 147 6 0 738 1 0 9 45 0 32 1 0 5 0 46 106 668 0 672 1 0 142 chain 8123 chr7 159138663 + 152282821 152282931 SVA_E 1901 - 659 797 131401 13 0 1 8 26 53 63 chain 2253 chr7 159138663 + 152282842 152282868 SVA_E 1901 - 933 958 135400 9 2 1 15 chain 30798 chr7 159138663 + 152282973 152283414 SVA_F 1814 - 540 1126 82869 68 49 0 33 0 1 207 0 27 8 4 1 27 6 135 16 6 46 17 chain 3721 chr7 159138663 + 152283041 152283090 SVA_F 1814 - 784 833 121893 49 chain 9314 chr7 159138663 + 152290059 152290169 5S 121 - 4 114 163994 110 chain 4994 chr7 159138663 + 152306932 152307080 L1MC5 759 + 135 288 195207 23 7 5 25 2 0 7 48 57 36 chain 28432 chr7 159138663 + 152309886 152310239 THE1A 353 + 0 353 91456 110 1 0 185 0 1 57 chain 15975 chr7 159138663 + 152310245 152310462 L1MA3 4352 - 620 830 138430 140 12 5 65 chain 25637 chr7 159138663 + 152315236 152315534 AluSp 311 - 8 304 101551 5 2 0 291 chain 25607 chr7 159138663 + 152315932 152316228 AluSp 311 - 15 311 101690 296 chain 4003 chr7 159138663 + 152320864 152320910 MSTA 426 - 236 282 207345 46 chain 344478 chr7 159138663 + 152324083 152328087 L1PA5 6144 - 6 4139 11773 106 1 0 1004 5 0 613 107 249 920 0 3 47 6 5 782 10 0 102 0 1 301 chain 9450 chr7 159138663 + 152325816 152325919 L1PA5 6144 + 4306 4409 161509 103 chain 37950 chr7 159138663 + 152341753 152342217 MER75 514 + 45 514 72211 229 0 1 7 5 8 207 0 1 16 chain 28949 chr7 159138663 + 152359650 152359957 AluYa5 310 - 4 310 89224 180 1 0 126 chain 23217 chr7 159138663 + 152364217 152364519 AluSp 311 + 8 311 114609 37 9 8 149 4 6 103 chain 16335 chr7 159138663 + 152381948 152382140 AluY 311 + 105 297 137381 18 1 0 9 0 1 164 chain 66339 chr7 159138663 + 152385567 152386348 LTR17 781 - 0 781 49933 12 0 1 438 6 5 325 chain 5715 chr7 159138663 + 152387632 152387721 L1PB1 5432 + 5346 5430 187972 24 1 0 21 1 0 13 1 0 14 1 0 6 1 0 6 chain 54011 chr7 159138663 + 152394622 152395274 LTR12C 1709 + 599 1709 56355 4 1 0 47 0 278 143 0 47 106 0 4 276 1 0 12 1 132 61 chain 38109 chr7 159138663 + 152401609 152402136 LTR10A 586 + 0 586 71970 18 0 1 152 5 35 18 1 30 27 1 2 220 8 6 77 chain 29362 chr7 159138663 + 152408616 152409010 MER51B 395 + 0 395 87236 15 11 10 225 0 1 4 1 2 138 chain 29299 chr7 159138663 + 152419409 152419715 AluYa5 310 - 4 310 87576 306 chain 132911 chr7 159138663 + 152426379 152427924 LTR12C 1709 - 0 1709 27442 222 0 2 257 0 4 106 3 1 5 1 0 116 0 161 835 chain 8305 chr7 159138663 + 152448107 152448285 LTR56 451 - 228 404 169368 87 61 59 30 chain 9056 chr7 159138663 + 152450591 152450702 MER72 723 - 612 723 165283 111 chain 3683 chr7 159138663 + 152452856 152452909 MLT1B 390 - 43 97 212180 29 3 4 21 chain 19639 chr7 159138663 + 152461432 152461750 AluSc8 310 + 0 306 128287 52 4 5 9 5 0 54 10 0 13 0 2 10 20 16 47 1 2 51 4 7 38 chain 4262 chr7 159138663 + 152461996 152462050 MSTD 398 - 12 66 203721 54 chain 23678 chr7 159138663 + 152471218 152471509 AluSp 311 - 16 300 112164 7 7 0 277 chain 46121 chr7 159138663 + 152535220 152535768 L1PA7 6471 + 5910 6461 61923 397 12 15 139 chain 28077 chr7 159138663 + 152560947 152561245 AluYg6 310 + 0 298 92726 298 chain 4493 chr7 159138663 + 152571111 152571433 L1PA8 5853 - 0 315 78632 93 1 0 17 1 0 55 1 0 6 1 0 74 2 0 44 1 0 26 chain 159852 chr7 159138663 + 152571459 152573370 L1PA6 6164 - 7 1932 23360 173 1 0 234 0 3 164 15 12 32 9 8 177 0 4 34 0 4 12 0 4 53 0 1 4 1 0 867 0 4 135 chain 1842 chr7 159138663 + 152573370 152573502 L1PA8 5853 - 316 448 78632 132 chain 191112 chr7 159138663 + 152576279 152578437 L1PA5 6144 + 3961 6144 19951 525 0 4 801 0 4 676 1 14 18 0 4 137 chain 25526 chr7 159138663 + 152581717 152582075 LTR7 482 + 0 474 102111 23 13 36 42 0 50 60 8 50 44 0 1 168 chain 27568 chr7 159138663 + 152606005 152606362 L1PA8 5853 - 0 351 94441 93 1 0 15 2 1 35 0 1 17 4 3 9 1 0 71 2 0 44 1 0 62 chain 5838 chr7 159138663 + 152612004 152612096 HAL1-2a_MD 234 + 0 146 186792 17 1 10 26 1 43 26 0 3 21 chain 25593 chr7 159138663 + 152626634 152626981 THE1B 368 + 0 356 101762 172 2 1 19 5 7 107 5 13 37 chain 405917 chr7 159138663 + 152638444 152643853 L1PB1 5432 - 45 5413 9915 17 1 0 24 24 19 30 14 1 16 1 0 13 12 11 20 1 0 15 2 1 24 0 1 28 2 0 8 5 1 12 1 0 11 1 0 21 1 0 4 13 8 105 7 6 111 1 0 35 32 40 10 8 0 150 1 2 13 0 1 344 1 0 13 0 3 160 0 2 359 11 12 109 7 8 35 0 1 4 1 0 73 15 3 71 0 9 10 9 0 826 8 13 22 0 1 59 4 0 52 0 6 9 6 0 842 3 0 30 4 8 131 3 5 12 9 0 732 1 3 210 0 3 159 0 1 184 5 4 82 chain 23742 chr7 159138663 + 152647728 152648015 AluYc 301 + 4 293 111823 116 0 2 171 chain 28747 chr7 159138663 + 152656376 152656800 MLT2A1 477 - 0 477 90140 8 0 4 25 7 3 13 3 39 84 7 8 28 1 17 44 0 1 23 0 1 9 4 1 42 0 1 126 chain 31110 chr7 159138663 + 152659049 152659413 L1PA7 6471 + 6100 6464 82325 364 chain 3936 chr7 159138663 + 152666662 152666710 MER34C_ 573 - 370 418 208328 48 chain 7724 chr7 159138663 + 152679377 152679468 MER41B 635 + 515 606 172759 91 chain 26739 chr7 159138663 + 152684348 152684687 THE1A 353 - 12 353 97192 57 1 5 77 1 0 92 1 0 110 chain 20928 chr7 159138663 + 152688132 152688437 MER4C 627 + 0 304 124183 84 1 0 7 0 1 26 1 0 36 11 12 38 8 7 93 chain 66008 chr7 159138663 + 152696143 152696982 L1P3 4156 - 2495 3370 50092 380 13 32 13 0 4 40 0 10 236 8 11 36 4 0 9 0 4 100 chain 7844 chr7 159138663 + 152700815 152700939 L1PA8 5853 + 5725 5847 172049 12 14 13 9 2 0 4 0 1 83 chain 35305 chr7 159138663 + 152708923 152709392 L1PA8 5853 + 5394 5852 75789 39 9 8 121 1 0 46 2 0 70 13 11 50 3 2 20 2 1 34 3 0 56 chain 35894 chr7 159138663 + 152717846 152718329 L1PA8 5853 - 0 476 75019 93 1 0 15 10 9 36 7 0 7 10 15 70 2 0 44 1 0 169 0 4 4 4 0 10 chain 32041 chr7 159138663 + 152720957 152721311 L1PA3long 6157 + 5803 6157 80799 354 chain 22789 chr7 159138663 + 152722921 152723183 L1PA6 6164 - 3 265 116634 262 chain 47300 chr7 159138663 + 152773292 152773839 L1PA5 6144 - 3 561 60966 153 1 11 261 0 1 132 chain 27087 chr7 159138663 + 152795152 152795479 L1PA7 6471 + 6114 6441 95982 172 4 6 6 2 0 143 chain 3380 chr7 159138663 + 152797932 152797994 MADE1 96 - 16 96 217476 21 11 29 30 chain 25230 chr7 159138663 + 152808764 152809051 AluY 311 + 14 302 103583 118 0 1 169 chain 498759 chr7 159138663 + 152814117 152819730 L1PA5 6144 - 0 6144 6911 843 0 4 1219 0 2 573 0 1 299 2 1 32 1 0 829 1 0 35 1 0 1241 0 1 303 1 2 143 0 525 26 0 1 64 chain 397389 chr7 159138663 + 152830999 152836346 L1PB1 5432 - 48 5420 10184 14 1 0 24 2 0 10 13 10 18 40 27 45 2 1 14 2 1 53 2 0 8 2 0 3 2 0 9 1 0 9 1 0 22 3 0 7 5 6 323 5 4 150 3 0 128 8 7 533 0 2 224 4 5 463 0 1 278 0 1 45 0 6 90 19 17 281 1 5 44 13 5 396 0 5 120 8 11 147 0 1 364 3 0 34 1 0 16 0 5 164 0 1 76 17 19 69 1 27 125 0 10 16 6 5 106 6 8 4 1 0 119 1 5 68 1 0 4 1 2 157 0 1 4 1 0 145 2 3 143 23 25 59 0 1 7 1 0 7 chain 25346 chr7 159138663 + 152846900 152847199 AluYc3 301 - 0 301 102980 112 0 1 73 1 2 113 chain 33565 chr7 159138663 + 152848494 152848946 MER4A1 472 - 0 472 78297 226 0 21 54 15 14 125 1 0 5 1 3 4 1 0 20 chain 55406 chr7 159138663 + 152851959 152852700 LTR17 781 - 27 781 55458 13 12 35 379 1 0 72 18 11 65 1 0 123 1 0 56 chain 22725 chr7 159138663 + 152853989 152854344 THE1A 353 - 0 353 116958 219 17 15 5 0 2 18 16 15 24 10 11 29 2 0 15 chain 3456 chr7 159138663 + 152856194 152856237 MER20 218 - 84 127 216064 43 chain 11052 chr7 159138663 + 152863293 152863425 L1PB4 2604 + 231 363 156004 132 chain 85281 chr7 159138663 + 152896454 152897670 L1PB1 5432 + 4248 5427 41428 32 0 2 346 3 0 151 2 0 18 1 9 297 1 0 11 11 0 24 7 6 14 4 0 10 2 0 52 2 1 15 1 0 45 1 0 9 29 18 18 3 1 5 1 0 14 2 0 6 0 1 17 1 0 22 1 0 12 1 0 18 2 0 5 chain 50636 chr7 159138663 + 152922394 152923072 LTR12_ 688 + 0 688 58550 142 1 2 195 0 17 22 5 6 45 8 0 180 1 0 79 chain 525527 chr7 159138663 + 152926112 152932524 L1PA7 6471 - 16 6456 4622 245 0 1 592 0 3 8 0 4 654 1 0 291 1 3 818 4 0 229 0 1 111 0 1 8 4 2 120 0 2 118 0 1 367 0 1 87 0 15 141 14 0 286 0 4 313 1 0 250 0 11 433 0 1 99 0 4 437 0 1 138 1 0 4 1 2 52 29 13 10 12 24 146 0 1 205 18 19 164 chain 4605 chr7 159138663 + 152937188 152937292 MER58A 224 - 32 144 199576 42 23 31 12 5 4 4 0 1 18 chain 143857 chr7 159138663 + 152937802 152940274 L1PB1 5432 - 10 1983 25505 18 1 0 12 1 0 20 1 0 28 2 0 12 1 0 5 3 1 17 21 8 20 1 0 45 369 3 12 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 118 20 154 2 3 131 9 1 72 1 0 105 3 0 150 0 1 339 0 1 175 1 0 7 0 1 96 5 7 128 0 3 271 chain 74199 chr7 159138663 + 152941763 152942637 MER11D 897 - 0 897 46413 130 0 1 156 4 27 122 1 0 461 chain 58287 chr7 159138663 + 152966571 152967227 L1PA4 6152 - 2167 2823 53815 656 chain 189784 chr7 159138663 + 152967227 152969363 L1PA4 6152 + 4001 6141 20073 1187 13 14 98 0 1 183 0 1 553 0 1 102 chain 4719 chr7 159138663 + 153000048 153000153 L1MA6 2487 + 2166 2255 198285 54 36 20 15 chain 320085 chr7 159138663 + 153001667 153005421 L1PA6 6164 + 2393 6161 12593 26 0 1 20 7 0 142 0 4 1260 6 5 44 0 1 19 0 4 728 0 3 52 0 1 615 0 5 338 0 1 438 6 10 46 2 0 5 chain 536504 chr7 159138663 + 153007429 153015825 L1PA5 6144 - 1 6141 3374 111 1 0 3520 2255 0 277 0 1 483 0 1 723 1 0 298 1 0 726 chain 176030 chr7 159138663 + 153011143 153013316 SVA_D 2077 - 14 2065 21352 662 4 0 13 81 0 41 1 2 104 17 0 155 2 0 34 1 0 6 35 10 6 1 0 7 7 8 33 0 38 27 2 1 526 0 3 315 33 0 60 chain 4580 chr7 159138663 + 153011822 153011891 SVA_D 2077 - 791 860 80201 69 chain 2716 chr7 159138663 + 153012264 153012299 SVA_D 2077 - 905 940 109587 35 chain 31071 chr7 159138663 + 153016516 153016977 L1PA8 5853 - 0 450 82392 92 2 1 19 2 1 59 10 0 73 9 7 37 1 0 46 12 15 33 0 1 66 chain 69632 chr7 159138663 + 153022779 153023559 L1PA4 6152 - 0 780 48556 780 chain 30494 chr7 159138663 + 153025296 153025686 MLT2A1 477 + 0 397 83443 142 0 1 25 0 4 210 1 3 12 chain 17049 chr7 159138663 + 153032430 153032620 L1PA4 6152 + 5962 6152 135460 190 chain 24528 chr7 159138663 + 153058625 153058888 AluYa5 310 - 7 270 107387 263 chain 24380 chr7 159138663 + 153085235 153085597 THE1C 375 - 0 375 108200 26 1 0 45 8 7 121 3 21 20 13 10 125 chain 15499 chr7 159138663 + 153087708 153087928 MER50 708 + 465 685 139901 37 1 0 128 1 0 5 5 6 30 0 1 13 chain 399495 chr7 159138663 + 153106482 153110892 HERV-Fc1-int 4575 - 176 4575 10116 97 1 0 14 0 2 33 4 0 3267 4 0 314 1 0 381 2 0 256 1 0 35 chain 31004 chr7 159138663 + 153110892 153111238 HERV-Fc1_LTR1 345 - 0 345 82502 65 1 0 280 chain 4411 chr7 159138663 + 153126254 153126422 MLT1F 544 + 353 544 201785 21 101 124 46 chain 3496 chr7 159138663 + 153128005 153128174 LTR9B 643 + 20 186 102191 75 4 1 90 chain 43240 chr7 159138663 + 153128512 153129067 LTR6B 557 + 0 557 65127 50 1 0 309 0 1 47 1 2 66 2 0 5 5 7 8 0 1 4 1 2 25 2 0 7 0 1 22 chain 3537 chr7 159138663 + 153129067 153129238 LTR9B 643 + 472 643 102191 171 chain 3566 chr7 159138663 + 153133713 153133926 L1MC4a 1092 - 574 785 214210 24 148 147 16 1 0 24 chain 15341 chr7 159138663 + 153135528 153135695 L1PA4 6152 - 16 183 140363 167 chain 123790 chr7 159138663 + 153162056 153163634 THE1A-int 1579 + 0 1579 29775 451 5 6 210 5 4 80 0 1 282 5 3 282 2 3 16 0 1 240 chain 30390 chr7 159138663 + 153181306 153181749 MLT2A1 477 - 0 477 83700 6 0 4 23 16 44 15 0 2 43 11 0 8 2 13 115 0 1 23 0 1 8 3 0 164 0 1 6 chain 47766 chr7 159138663 + 153185367 153185957 L1PA10 4194 - 48 640 60646 15 0 1 10 2 0 4 1 0 317 5 8 129 0 1 107 chain 8666 chr7 159138663 + 153185957 153186063 L1PA10 4194 + 3454 3560 166083 106 chain 19759 chr7 159138663 + 153190765 153191093 THE1C 375 + 16 341 127933 30 11 8 14 46 46 62 0 1 84 1 0 80 chain 30836 chr7 159138663 + 153191128 153191560 THE1C-int 1605 + 0 494 82796 16 1 2 78 0 57 13 3 0 136 0 1 4 4 3 130 5 12 42 chain 50272 chr7 159138663 + 153197830 153198563 L1PA10 4194 + 3424 4161 58808 12 0 1 99 0 4 129 0 2 5 29 26 316 0 4 59 5 4 16 25 23 26 2 1 10 chain 28511 chr7 159138663 + 153202179 153202577 MLT2A1 477 + 0 393 91146 131 20 10 28 0 4 149 2 1 60 0 2 8 chain 31630 chr7 159138663 + 153214551 153214989 MER4A1 472 + 0 472 81433 14 0 2 210 18 39 129 0 13 39 2 0 26 chain 40389 chr7 159138663 + 153232530 153233092 MLT2A2 560 + 0 560 68757 19 8 0 122 22 18 21 1 0 219 3 14 147 chain 121798 chr7 159138663 + 153256437 153258000 THE1A-int 1579 - 5 1579 30443 126 0 10 287 0 1 352 12 11 100 1 2 100 13 13 572 chain 12324 chr7 159138663 + 153269742 153269923 THE1C 375 - 190 375 150916 46 17 21 118 chain 33588 chr7 159138663 + 153272384 153272812 THE1B-int 1605 + 0 432 78262 184 0 3 116 5 6 123 chain 15815 chr7 159138663 + 153274308 153274667 THE1B 368 + 2 368 138910 79 53 54 34 76 81 60 1 2 56 chain 7289 chr7 159138663 + 153278272 153278385 L1MA3 4352 + 4173 4280 175513 6 1 0 82 2 0 14 3 0 5 chain 28664 chr7 159138663 + 153280125 153280434 AluYg6 310 + 0 308 90472 259 1 0 49 chain 20145 chr7 159138663 + 153310139 153310363 L1P1 4361 - 72 295 126690 139 1 0 84 chain 42303 chr7 159138663 + 153310363 153310821 L1PA2 6032 + 5573 6031 66264 458 chain 35265 chr7 159138663 + 153319408 153319834 L1PA7 6471 - 7 430 75837 30 5 1 120 1 2 270 chain 7434 chr7 159138663 + 153327393 153327516 MER85 139 + 2 139 174550 37 12 16 33 1 11 40 chain 47685 chr7 159138663 + 153386959 153387526 LTR22 571 + 0 568 60708 436 3 4 128 chain 29726 chr7 159138663 + 153387766 153388119 THE1B 368 - 0 368 85734 313 0 15 40 chain 45099 chr7 159138663 + 153390804 153391358 MLT2A2 560 - 0 560 62938 242 0 1 119 1 4 33 0 1 99 0 1 60 chain 5145 chr7 159138663 + 153391459 153391515 MLT2A2 560 - 496 552 193604 56 chain 10026 chr7 159138663 + 153425807 153425946 L1PA8 5853 - 9 145 160443 39 1 0 44 2 1 19 2 1 32 chain 3639 chr7 159138663 + 153489753 153489810 MER50B 698 - 130 182 212997 32 1 0 14 4 0 6 chain 27825 chr7 159138663 + 153489825 153490170 THE1A 353 + 10 352 93604 100 1 0 152 2 0 90 chain 121237 chr7 159138663 + 153490171 153491768 THE1A-int 1579 + 0 1579 30624 505 0 10 90 67 15 21 12 36 290 4 5 423 1 0 184 chain 27448 chr7 159138663 + 153491768 153492122 THE1A 353 + 0 353 94823 107 7 6 240 chain 34583 chr7 159138663 + 153502685 153503095 L1PA5 6144 + 5731 6142 76778 79 5 6 326 chain 104042 chr7 159138663 + 153510106 153511265 L1PA3long 6157 - 0 1157 35724 147 8 1 190 0 1 530 0 4 284 chain 98646 chr7 159138663 + 153511270 153512405 L1P1 4361 + 3211 4341 37112 213 2 0 726 1 0 155 1 0 23 2 1 12 chain 29382 chr7 159138663 + 153514653 153515016 L1PA5 6144 + 5783 6143 87158 22 1 2 82 0 2 140 1 0 104 5 0 8 chain 74286 chr7 159138663 + 153540483 153541351 MER11D 897 - 0 897 46365 91 0 2 20 0 1 172 2 25 573 0 3 10 chain 18228 chr7 159138663 + 153541352 153541560 HERVK11D-int 613 - 1 208 132262 80 1 0 127 chain 5856 chr7 159138663 + 153544266 153544332 MER41B 635 - 88 154 186630 66 chain 12957 chr7 159138663 + 153545101 153545601 LTR22C 500 - 11 500 148405 35 1 0 16 55 60 10 0 1 4 7 4 69 0 1 29 28 0 6 17 0 18 169 200 36 chain 25564 chr7 159138663 + 153549323 153549719 MSTA 426 - 15 426 101909 61 25 34 43 8 10 53 13 18 63 2 0 25 0 1 103 chain 50976 chr7 159138663 + 153550859 153551408 L1PA2 6032 - 931 1480 58273 549 chain 85920 chr7 159138663 + 153551408 153552336 L1PA2 6032 + 5104 6032 41189 928 chain 14338 chr7 159138663 + 153560297 153560461 L1PA7 6471 - 277 441 143433 164 chain 547607 chr7 159138663 + 153562740 153568884 L1PA4 6152 - 1 6151 1752 16 0 1 826 0 4 3102 0 2 961 6 7 604 1 0 322 1 0 305 chain 2893 chr7 159138663 + 153573924 153573955 Tigger3b 1229 + 963 994 227167 31 chain 3140 chr7 159138663 + 153575055 153575096 L1ME3A 1206 + 589 630 222184 41 chain 34898 chr7 159138663 + 153581113 153581512 L1PA5 6144 - 16 416 76343 382 0 1 17 chain 14998 chr7 159138663 + 153581512 153581678 L1PA5 6144 + 5533 5699 141323 166 chain 3527 chr7 159138663 + 153591260 153591305 MER65C 458 - 408 454 214933 4 0 1 41 chain 19686 chr7 159138663 + 153611102 153611391 THE1B 368 + 6 306 128140 169 2 0 17 35 48 66 chain 5412 chr7 159138663 + 153663700 153663765 L1PA4 6152 - 11 76 190869 65 chain 23590 chr7 159138663 + 153664982 153665461 L1PA16 3655 - 239 721 112632 126 0 2 5 9 6 67 11 10 11 9 19 11 112 107 118 chain 527262 chr7 159138663 + 153674648 153681081 L1PA7 6471 - 5 6462 4472 34 1 0 13 0 1 109 0 1 107 0 2 62 0 1 519 0 3 80 0 15 20 27 5 16 0 5 154 0 5 249 0 5 81 1 0 339 1 0 19 1 0 100 1 3 561 0 1 127 1 0 185 2 1 113 2 1 31 0 1 441 0 1 362 0 1 4 2 1 30 1 4 19 23 25 1140 0 3 1055 1 2 140 0 1 259 chain 10247 chr7 159138663 + 153754245 153754365 HERVE-int 4064 + 2594 2714 159388 120 chain 49332 chr7 159138663 + 153754514 153755104 HERVE-int 4064 + 2118 2705 59498 93 3 0 494 chain 46642 chr7 159138663 + 153756452 153757038 HERVE-int 4064 + 2118 2705 61500 88 6 5 121 0 2 54 0 1 5 1 0 311 chain 3148 chr7 159138663 + 153757591 153757631 HERVE-int 4064 + 2118 2158 221987 40 chain 47130 chr7 159138663 + 153758058 153758644 HERVE-int 4064 + 2118 2705 61103 88 6 5 121 0 2 54 0 1 5 1 0 311 chain 4217 chr7 159138663 + 153764126 153764183 MER3 215 + 162 215 204320 15 4 0 38 chain 53957 chr7 159138663 + 153771987 153772892 L1PB1 5432 + 4566 5430 56398 62 3 0 340 4 0 45 7 9 81 1 4 7 5 0 22 2 0 8 1 0 14 17 11 47 22 20 43 2 1 16 3 0 16 9 0 14 1 0 5 3 1 13 3 1 24 1 0 21 2 1 9 2 1 20 1 0 4 1 0 4 chain 26337 chr7 159138663 + 153781804 153782096 AluY 311 + 12 304 98662 292 chain 25803 chr7 159138663 + 153795128 153795503 THE1C 375 + 0 375 100854 60 17 12 52 0 1 10 0 4 46 1 2 163 8 7 18 chain 76077 chr7 159138663 + 153862090 153862917 L1PA2 6032 - 0 827 45428 827 chain 39669 chr7 159138663 + 153946926 153947385 LTR2 463 + 0 463 69797 187 0 3 5 1 0 159 0 1 13 0 1 94 chain 17611 chr7 159138663 + 153957402 153958397 L1PB1 5432 - 12 619 133963 13 5 4 9 4 3 16 9 8 14 74 57 14 14 5 39 2 1 16 9 8 46 17 11 9 1 0 13 2 0 18 536 188 115 chain 45843 chr7 159138663 + 153958397 153958949 L1PB1 5432 + 4240 4789 62186 388 3 0 161 chain 59257 chr7 159138663 + 154026536 154027282 L1PA8 5853 + 5111 5853 53245 150 6 9 104 0 3 185 1 0 46 2 0 47 3 0 23 2 1 12 1 0 5 1 0 4 0 1 39 2 1 19 1 0 93 chain 21430 chr7 159138663 + 154049593 154049917 L1PA8 5853 + 5532 5844 122408 7 5 0 25 1 0 44 2 0 70 2 1 8 0 6 7 8 1 39 2 1 19 1 0 84 chain 26345 chr7 159138663 + 154062756 154063064 AluY 311 + 0 304 98631 95 5 0 37 0 1 171 chain 17019 chr7 159138663 + 154076398 154076607 L1PA6 6164 + 5960 6162 135540 187 1 0 9 6 0 6 chain 109002 chr7 159138663 + 154098635 154099842 L1PA3long 6157 + 4953 6156 34441 7 3 0 4 1 0 1192 chain 36834 chr7 159138663 + 154153826 154154232 L1P1 4361 - 40 444 73099 16 1 0 155 1 0 233 chain 79110 chr7 159138663 + 154154232 154155070 L1HS 6032 + 5194 6032 43995 838 chain 19675 chr7 159138663 + 154155210 154155510 THE1B 368 + 0 306 128183 108 11 13 48 2 0 5 1 2 14 7 10 10 0 4 16 1 0 10 1 0 66 chain 21489 chr7 159138663 + 154159737 154159972 L1PA4 6152 - 1 236 122184 235 chain 10653 chr7 159138663 + 154159972 154160140 L1MA3 4352 - 1899 2066 157592 59 1 0 40 0 2 6 11 10 23 1 0 27 chain 28798 chr7 159138663 + 154160280 154160591 AluYg6 310 - 0 310 89907 184 1 0 126 chain 82949 chr7 159138663 + 154162418 154163446 L1PA7 6471 + 5434 6466 42359 75 1 0 112 7 10 458 0 1 47 1 2 73 1 0 6 7 8 240 chain 18987 chr7 159138663 + 154185301 154185552 AluY 311 + 14 297 130138 6 4 0 113 1 0 49 0 41 37 8 4 33 chain 12273 chr7 159138663 + 154204368 154204529 L1PA8 5853 - 0 159 151102 93 1 0 19 2 1 46 chain 21446 chr7 159138663 + 154236482 154236727 L1PA5 6144 + 5899 6144 122346 245 chain 33378 chr7 159138663 + 154252343 154252711 L1PA4 6152 + 5783 6151 78603 368 chain 19700 chr7 159138663 + 154255043 154255287 L1PA7 6471 - 10 253 128101 144 1 0 99 chain 24425 chr7 159138663 + 154391238 154391544 L1PA6 6164 - 15 311 107938 59 12 2 235 chain 25255 chr7 159138663 + 154422304 154422658 L1PA8 5853 + 5503 5853 103450 18 0 1 42 1 0 46 2 0 68 2 1 14 1 0 47 2 1 19 14 13 58 0 2 20 chain 36364 chr7 159138663 + 154425728 154426144 L1PA4 6152 - 0 422 74415 6 0 5 102 0 1 308 chain 4832 chr7 159138663 + 154426144 154426198 L1PA4 6152 + 5645 5699 196996 54 chain 20496 chr7 159138663 + 154466831 154467074 L1PA6 6164 + 5918 6162 125640 68 0 1 175 chain 39852 chr7 159138663 + 154468378 154468895 HERV1_LTRd 520 - 9 520 69532 43 1 0 36 0 1 71 0 2 17 1 0 198 1 0 79 6 1 8 1 0 55 chain 58708 chr7 159138663 + 154469586 154470375 LTR12 884 + 0 880 53577 94 0 2 29 0 66 35 1 2 127 0 22 34 0 1 31 9 8 12 3 0 18 0 3 396 chain 112267 chr7 159138663 + 154504539 154506067 THE1C-int 1605 - 8 1590 33597 74 1 6 239 15 30 34 0 4 56 11 15 162 1 2 284 7 6 228 23 30 92 0 6 78 1 13 82 7 8 133 chain 38785 chr7 159138663 + 154546371 154546852 L1PA8 5853 + 5379 5853 71032 185 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 23303 chr7 159138663 + 154553430 154553717 L1PA5 6144 - 0 311 114184 33 0 21 82 5 8 167 chain 2965 chr7 159138663 + 154570281 154570426 HAL1-2a_MD 234 + 22 226 225780 16 3 0 5 43 129 14 19 1 6 3 0 8 3 0 25 chain 26252 chr7 159138663 + 154578058 154578390 THE1C 375 + 0 336 99012 186 0 1 20 0 3 126 chain 12925 chr7 159138663 + 154637228 154637383 L1PA5 6144 + 5989 6144 148529 155 chain 28002 chr7 159138663 + 154671008 154671328 AluYf4 310 + 0 307 92995 118 10 0 184 3 0 5 chain 26981 chr7 159138663 + 154689447 154689773 L1PA6 6164 - 3 327 96343 5 2 0 319 chain 29490 chr7 159138663 + 154699885 154700254 LTR12_ 688 - 23 403 86672 31 0 2 72 0 5 175 2 6 89 chain 10692 chr7 159138663 + 154709981 154710109 PRIMA4_LTR 623 + 495 623 157446 128 chain 8117 chr7 159138663 + 154727019 154727174 THE1C-int 1605 - 1449 1605 170402 66 17 18 28 13 12 16 1 2 14 chain 6627 chr7 159138663 + 154791792 154791869 MER61E 571 + 390 467 180258 77 chain 29986 chr7 159138663 + 154813357 154813726 MER41A 554 - 164 534 84855 274 0 1 95 chain 6139 chr7 159138663 + 154822810 154822883 SVA_B 1603 - 0 71 184090 5 2 0 66 chain 59255 chr7 159138663 + 154826369 154827016 SVA_C 1631 + 889 1623 53246 55 0 87 592 chain 4786 chr7 159138663 + 154828710 154828763 MER41A 554 - 501 554 197512 53 chain 16441 chr7 159138663 + 154835127 154835444 THE1B 368 - 29 365 137092 27 7 6 53 43 46 6 0 3 29 1 0 59 2 3 24 14 28 52 chain 3911 chr7 159138663 + 154835446 154835487 MER87 546 + 163 204 208691 41 chain 17837 chr7 159138663 + 154852986 154853762 L1PB1 5432 - 12 416 133280 16 1 0 13 1 0 21 1 0 17 31 26 18 24 13 16 1 0 43 1 0 16 2 1 35 342 4 14 2 0 5 9 5 10 1 0 9 1 0 20 23 19 46 16 16 21 chain 95213 chr7 159138663 + 154887999 154889112 SVA_A 1864 - 1 1851 38029 146 4 0 401 3 0 35 0 745 354 1 0 169 chain 4889 chr7 159138663 + 154896323 154896377 MER4E 760 + 0 54 196382 54 chain 22661 chr7 159138663 + 154907420 154907781 THE1B 368 - 0 368 117267 60 1 0 58 14 22 14 0 1 4 1 0 4 0 5 7 23 16 60 4 6 111 chain 91780 chr7 159138663 + 154942638 154943699 MER11C 1089 + 0 1063 39037 592 0 1 144 0 1 325 chain 25279 chr7 159138663 + 154964979 154965276 AluY 311 + 11 309 103322 115 0 1 182 chain 6610 chr7 159138663 + 154971327 154971404 MLT2A1 477 - 92 168 180382 62 1 0 14 chain 11864 chr7 159138663 + 155013002 155013162 L1PA8 5853 - 0 158 152769 93 1 0 19 8 7 39 chain 42378 chr7 159138663 + 155029914 155030449 MER9a1 513 - 10 513 66181 308 0 2 96 1 0 47 5 0 3 28 0 47 chain 302068 chr7 159138663 + 155030449 155034053 HERVK9-int 4720 - 0 4666 13316 165 2 1 8 0 28 80 0 96 273 0 1 131 1 5 42 0 9 247 0 1 577 0 4 582 0 1 4 1 0 45 0 924 1329 6 5 30 1 0 8 1 0 66 1 0 4 chain 44260 chr7 159138663 + 155035384 155035897 MER9a1 513 - 0 513 63868 513 chain 32624 chr7 159138663 + 155078031 155078478 MLT2A1 477 + 0 477 79809 167 6 3 33 5 6 176 4 0 8 11 47 37 chain 99134 chr7 159138663 + 155105993 155107156 L1PA7 6471 + 5301 6464 36992 159 1 2 159 1 0 843 chain 102020 chr7 159138663 + 155158776 155160110 SVA_E 1901 - 0 1232 36257 597 128 0 209 1 0 135 1 2 31 4 0 110 1 0 5 1 0 8 47 39 17 6 46 33 chain 3480 chr7 159138663 + 155159373 155159414 SVA_E 1901 - 724 765 72086 41 chain 6469 chr7 159138663 + 155159415 155159501 SVA_E 1901 - 638 724 70580 86 chain 2261 chr7 159138663 + 155160023 155160054 SVA_E 1901 - 642 673 124652 31 chain 3210 chr7 159138663 + 155160110 155160154 SVA_E 1901 - 729 773 124652 44 chain 3979 chr7 159138663 + 155160154 155160196 SVA_E 1901 - 899 941 149096 42 chain 81280 chr7 159138663 + 155160201 155161163 SVA_D 2077 - 518 2072 43050 17 1 0 16 0 1 124 9 5 6 0 5 172 1 310 130 0 270 444 0 12 42 chain 64841 chr7 159138663 + 155177751 155178503 LTR17 781 - 8 781 50638 23 0 22 401 1 0 327 chain 93711 chr7 159138663 + 155190217 155191407 LTR12C 1709 - 0 1709 38435 7 0 1 76 1 0 6 0 33 72 0 1 285 0 4 21 0 485 250 53 6 81 0 43 338 chain 16530 chr7 159138663 + 155223662 155223850 L1PA5 6144 + 5955 6143 136834 188 chain 3296 chr7 159138663 + 155226667 155226708 MSTA 426 + 385 426 219057 41 chain 8758 chr7 159138663 + 155239156 155239267 Charlie1a 1436 + 708 819 166876 111 chain 8782 chr7 159138663 + 155368699 155368828 MER85 139 - 0 139 166755 23 3 0 6 1 14 96 chain 27611 chr7 159138663 + 155388732 155389072 LTR9 672 - 333 672 94320 314 1 0 25 chain 5435 chr7 159138663 + 155396920 155396994 MLT1D 503 + 17 89 190656 7 2 0 65 chain 93762 chr7 159138663 + 155420128 155421194 L1PA6 6164 + 5097 6162 38419 1056 1 0 9 chain 12965 chr7 159138663 + 155426705 155427067 L1MA8 2339 - 76 391 148370 6 1 0 24 8 6 26 11 5 36 16 13 21 74 48 15 4 0 50 7 5 49 2 0 7 1 0 4 chain 11599 chr7 159138663 + 155455939 155456325 MSTA 426 - 0 398 153890 100 25 28 18 188 197 55 chain 437323 chr7 159138663 + 155479173 155484122 L1PA5 6144 - 0 4963 9117 11 3 1 837 0 4 474 0 1 931 0 2 200 0 3 990 0 3 380 0 1 111 9 11 1003 chain 3927 chr7 159138663 + 155591976 155592023 MER58B 340 - 145 192 208462 47 chain 5110 chr7 159138663 + 155664601 155664673 MADE1 96 - 8 96 193974 37 2 18 33 chain 13639 chr7 159138663 + 155665025 155665177 L1PA4 6152 + 5984 6136 145817 152 chain 2893 chr7 159138663 + 155723229 155723260 MER53 195 - 89 120 227134 31 chain 3693 chr7 159138663 + 155738364 155738403 MER51A 677 + 622 661 212039 39 chain 22628 chr7 159138663 + 155779851 155780211 THE1B 368 + 1 368 117437 168 1 0 21 7 10 14 1 5 11 1 0 9 15 14 53 10 13 49 chain 5116 chr7 159138663 + 155855568 155855630 MER5A1 166 - 59 121 193908 62 chain 12577 chr7 159138663 + 155867320 155867488 MER30 238 + 50 236 149926 57 4 21 52 0 1 55 chain 13909 chr7 159138663 + 155923085 155923239 L1PA4 6152 - 5 159 144887 154 chain 13809 chr7 159138663 + 155925756 155925980 L1PB 1623 + 1312 1524 145224 25 1 0 113 11 9 25 1 0 4 4 1 9 8 4 13 1 0 9 chain 25853 chr7 159138663 + 155945700 155946036 THE1B 368 + 12 359 100640 32 0 15 110 1 0 31 2 0 87 7 6 66 chain 33123 chr7 159138663 + 155953960 155954333 L1PA4 6152 + 5771 6143 79021 127 1 0 245 chain 8864 chr7 159138663 + 155978817 155978916 HY3 101 - 1 100 166306 99 chain 22070 chr7 159138663 + 155981965 155982234 AluSx1 309 + 16 285 119924 4 0 1 234 1 0 30 chain 25126 chr7 159138663 + 155997884 155998177 AluSp 311 - 8 301 104147 293 chain 122390 chr7 159138663 + 156036959 156038864 L1M1 2793 - 149 2064 30253 16 1 0 128 6 27 39 18 15 172 0 1 33 12 18 4 0 1 83 0 7 91 1 0 18 43 49 41 5 6 186 43 14 31 10 9 123 0 1 6 1 0 240 22 18 6 2 0 13 4 0 66 0 30 149 5 4 97 1 0 6 5 3 54 1 0 9 12 9 18 2 1 30 2 0 6 4 1 20 2 0 5 2 0 11 chain 70777 chr7 159138663 + 156055289 156056186 L1PA8 5853 - 0 903 48025 93 1 0 19 2 1 61 1 0 70 2 0 45 1 0 168 0 6 228 6 8 68 0 2 75 0 2 57 chain 38738 chr7 159138663 + 156069486 156070036 MLT2A2 560 - 0 560 71094 43 2 0 6 1 3 18 5 6 71 4 15 87 3 0 111 7 8 192 chain 17559 chr7 159138663 + 156102281 156102505 L1PA8 5853 + 5633 5853 134102 49 1 0 6 1 0 52 2 1 19 1 0 93 chain 13102 chr7 159138663 + 156106685 156106969 MER44A 345 + 1 344 147839 17 34 60 29 13 19 48 0 4 79 38 60 20 0 1 6 chain 34690 chr7 159138663 + 156113965 156114378 L1PA7 6471 - 2 418 76640 11 0 2 140 2 3 260 chain 27404 chr7 159138663 + 156162595 156162952 THE1B 368 + 0 368 94954 44 0 15 110 1 0 31 2 0 87 7 6 75 chain 146916 chr7 159138663 + 156185560 156187199 L1PA4 6152 + 4508 6152 25031 828 0 4 49 0 1 762 chain 3368 chr7 159138663 + 156226207 156226275 L1MA10 1535 + 1472 1535 217704 31 17 12 20 chain 30879 chr7 159138663 + 156293620 156293984 L1PA7 6471 - 1058 1419 82438 38 2 0 72 2 0 106 1 2 143 chain 88868 chr7 159138663 + 156293984 156295035 L1PA7 6471 + 5417 6469 40055 207 0 4 82 1 0 749 2 0 10 chain 30496 chr7 159138663 + 156321329 156321668 L1PA4 6152 + 5813 6152 83437 339 chain 25472 chr7 159138663 + 156330028 156330392 THE1B 368 + 0 368 102349 168 36 41 4 0 1 18 1 0 10 1 0 126 chain 20894 chr7 159138663 + 156356183 156356549 THE1D 372 - 0 372 124298 57 11 12 79 58 64 41 7 6 113 chain 106073 chr7 159138663 + 156356563 156357953 THE1D-int 1627 - 15 1408 35238 35 1 0 676 0 6 111 1 7 9 20 14 71 15 12 86 1 3 46 7 6 311 chain 16243 chr7 159138663 + 156363076 156363459 L1PB1 5432 + 5070 5420 137640 33 3 4 7 1 0 24 1 0 9 21 16 7 2 0 50 2 1 17 1 0 37 6 5 16 69 50 24 1 0 21 1 0 13 1 0 16 chain 54100 chr7 159138663 + 156383558 156384231 MER11B 1079 + 0 667 56294 101 1 0 158 3 0 304 34 32 72 chain 3624 chr7 159138663 + 156384231 156384271 MER11B 1079 - 443 483 202605 40 chain 68227 chr7 159138663 + 156391787 156392542 L1PA3long 6157 + 5400 6157 49147 181 0 2 574 chain 46503 chr7 159138663 + 156412555 156413107 MER41A 554 - 0 554 61593 123 1 2 116 0 1 312 chain 13295 chr7 159138663 + 156414336 156414507 L1MA8 2339 + 43 213 147105 31 1 0 139 chain 12152 chr7 159138663 + 156429127 156429270 L1PA3long 6157 + 6009 6152 151602 143 chain 4086 chr7 159138663 + 156439497 156439543 MSTC 436 + 1 47 206127 46 chain 36705 chr7 159138663 + 156440124 156440777 L1PB3 3668 - 73 710 73952 13 5 16 37 3 1 25 1 0 8 2 1 12 20 4 87 12 11 62 37 36 61 1 0 4 1 2 108 11 14 9 0 2 79 8 0 16 2 0 29 chain 8630 chr7 159138663 + 156445316 156445450 Tigger3b 1229 + 484 634 167584 77 12 24 6 0 1 23 0 3 16 chain 68199 chr7 159138663 + 156489475 156491852 THE1B-int 1605 - 5 1341 32668 197 1036 0 259 1 12 276 4 5 77 0 2 73 12 11 221 8 35 15 7 0 6 38 0 147 chain 71760 chr7 159138663 + 156489696 156490708 MER11A 1151 - 18 1151 47584 18 0 4 32 9 13 145 0 1 36 18 0 22 8 41 34 0 2 95 5 6 16 1 0 120 13 14 90 0 1 115 0 2 32 4 0 60 0 4 52 8 0 24 0 99 55 chain 125458 chr7 159138663 + 156491852 156493242 L1PA4 6152 + 4743 6146 29255 561 0 4 241 0 9 259 0 1 185 1 0 143 chain 6656 chr7 159138663 + 156493263 156493495 THE1B-int 1605 - 1346 1578 32668 232 chain 41538 chr7 159138663 + 156511679 156512135 L1PA3long 6157 - 0 458 67238 141 0 2 315 chain 134855 chr7 159138663 + 156532116 156534317 L1M1 2793 + 534 2685 27049 6 1 0 15 89 63 17 76 26 41 87 108 18 14 11 54 11 8 102 1 2 170 4 5 89 7 0 39 0 1 6 1 0 174 0 8 366 1 0 16 0 1 5 2 0 221 13 18 27 0 1 141 1 9 11 3 1 105 6 8 13 1 0 188 7 6 39 1 0 12 chain 43563 chr7 159138663 + 156552397 156552957 LTR10A 586 - 21 586 64729 137 7 10 135 1 2 101 1 2 178 chain 19277 chr7 159138663 + 156557868 156558217 THE1D 372 + 0 357 129299 12 1 3 41 31 22 88 22 19 6 0 2 26 3 19 32 1 2 4 1 0 81 chain 77004 chr7 159138663 + 156564977 156567580 L1PA15 4387 + 2418 4366 44964 173 2 1 65 1 0 41 565 253 34 0 3 83 0 3 93 6 5 22 0 2 144 8 1 216 3 2 14 4 3 130 961 623 27 1 0 10 chain 119214 chr7 159138663 + 156595524 156596847 L1PA4 6152 + 4819 6151 31328 730 0 9 593 chain 5191 chr7 159138663 + 156601503 156601570 MER41B 635 + 481 547 193137 26 1 0 40 chain 2745 chr7 159138663 + 156618142 156618192 L1MA3 4352 + 4228 4276 229547 25 10 8 15 chain 34738 chr7 159138663 + 156621488 156621974 LTR10D 510 + 0 510 76560 61 15 18 16 0 1 76 0 5 11 1 5 17 4 12 11 2 0 5 3 2 30 0 1 22 0 5 212 chain 46440 chr7 159138663 + 156640775 156641911 L1PA15 4387 + 3521 4356 61645 40 5 6 107 2 1 37 0 1 7 7 10 59 0 37 65 3 1 40 1 0 23 0 11 12 1 0 80 15 14 28 351 21 9 1 0 55 1 0 17 4 0 6 12 10 49 9 6 41 3 1 10 9 4 27 chain 23373 chr7 159138663 + 156651665 156651957 AluSp 311 + 0 297 113795 174 4 9 114 chain 25261 chr7 159138663 + 156652830 156653192 THE1B 368 - 0 368 103408 37 9 10 14 1 5 107 1 0 26 1 0 63 3 4 32 2 4 66 chain 29424 chr7 159138663 + 156654762 156655130 THE1B 368 - 0 366 86967 175 1 0 24 1 0 167 chain 33835 chr7 159138663 + 156655764 156656223 MLT2A1 477 - 7 461 77881 32 2 0 15 16 0 13 3 25 190 7 0 25 4 1 49 0 1 103 chain 3721 chr7 159138663 + 156661680 156661728 MER45B 1037 + 787 835 211628 48 chain 8600 chr7 159138663 + 156665623 156665714 LTR12C 1709 - 0 91 167733 91 chain 127678 chr7 159138663 + 156665755 156667260 LTR12C 1709 - 0 1709 28651 481 0 4 107 3 1 5 1 0 74 0 200 411 2 3 66 1 2 193 0 1 161 chain 404373 chr7 159138663 + 156667283 156673174 L1PB1 5432 + 92 5414 9967 52 0 1 11 1 3 211 25 24 12 2 0 359 17 0 319 0 4 212 0 1 108 3 1 127 0 4 68 0 2 839 0 1 37 8 0 104 17 88 140 2 0 5 0 1 7 2 1 48 0 4 44 2 0 5 0 6 45 0 1 23 1 0 4 1 2 92 0 2 49 307 0 452 0 2 115 5 0 73 0 4 362 0 4 54 0 6 378 0 4 8 3 0 23 310 0 159 1 3 206 5 7 84 1 2 8 2 0 25 1 0 6 1 0 14 5 1 8 2 0 53 3 2 14 1 0 60 3 0 6 16 6 19 7 4 15 3 1 26 1 0 18 2 0 14 1 0 9 chain 555294 chr7 159138663 + 156702091 156708234 L1PA3long 6157 - 0 6157 794 849 0 1 625 5 13 108 0 1 1598 0 1 774 0 2 361 0 1 1823 chain 79847 chr7 159138663 + 156713074 156714034 LTR13A 966 - 0 966 43660 83 0 2 189 1 0 188 0 5 113 1 0 167 4 0 91 0 1 47 0 4 76 chain 4372 chr7 159138663 + 156720675 156720732 MER4E1 777 - 11 70 202294 12 0 2 45 chain 16365 chr7 159138663 + 156721494 156721716 MER4D1 891 - 96 324 137298 121 12 9 53 0 9 36 chain 3440 chr7 159138663 + 156741750 156741789 MLT1C 463 - 361 400 216378 39 chain 36545 chr7 159138663 + 156856573 156856967 L1PA3long 6157 + 5752 6146 74177 394 chain 28657 chr7 159138663 + 156857295 156857645 THE1A 353 + 0 353 90499 110 1 0 49 0 1 33 0 1 101 0 2 56 chain 7680 chr7 159138663 + 156876620 156876724 MSTA-int 1630 + 370 471 173045 96 3 0 5 chain 9042 chr7 159138663 + 156885500 156885611 LTR23 429 - 164 275 165363 111 chain 4645 chr7 159138663 + 156888093 156888147 LTR54 533 + 360 414 199121 54 chain 416721 chr7 159138663 + 156892552 156897236 L1PA5 6144 - 1 4690 9613 112 2 1 71 0 3 573 1 0 270 0 2 1101 0 1 22 0 3 808 1 0 862 2 1 859 chain 23546 chr7 159138663 + 156898169 156898466 THE1A 353 + 0 296 112875 110 1 0 186 chain 4006 chr7 159138663 + 156935320 156935389 L1PA16 3655 + 3525 3592 207308 40 2 3 8 4 1 15 chain 4936 chr7 159138663 + 156947446 156947503 HY3 101 - 5 62 195861 57 chain 48484 chr7 159138663 + 157097822 157099638 MER4E1 777 - 9 688 60127 13 0 2 109 0 5 56 336 0 33 0 8 113 824 0 23 8 10 112 0 4 27 1 2 17 1 2 143 chain 3882 chr7 159138663 + 157101426 157101471 MER41B 635 - 377 422 209151 45 chain 26724 chr7 159138663 + 157101496 157101799 AluSp 311 - 7 311 97242 40 0 1 263 chain 2883 chr7 159138663 + 157102042 157102077 MER34C2 569 + 496 531 227327 35 chain 4495 chr7 159138663 + 157105543 157105595 LTR62 707 + 431 483 200834 52 chain 30670 chr7 159138663 + 157108239 157108855 MER4E1 777 + 331 769 83094 124 3 4 4 0 1 34 220 46 6 6 0 219 chain 3934 chr7 159138663 + 157138959 157139001 MER66B 489 + 295 337 208359 42 chain 24229 chr7 159138663 + 157146841 157147127 AluSp 311 - 16 298 109045 7 4 0 275 chain 28208 chr7 159138663 + 157169666 157170043 MER4E1 777 - 262 777 92277 51 0 1 191 9 10 11 0 1 38 0 133 60 0 2 17 chain 542432 chr7 159138663 + 157241115 157247239 L1PA4 6152 - 0 6151 2441 16 0 3 122 7 0 45 2 0 51 6 8 377 1 2 545 1 0 354 1 0 281 0 4 259 0 1 244 7 19 651 1 0 1924 1 0 104 0 1 842 4 5 82 0 1 54 1 15 141 chain 25535 chr7 159138663 + 157284612 157284890 L1PA3long 6157 - 0 278 102081 278 chain 3908 chr7 159138663 + 157300195 157300257 L1MA9 1812 - 213 272 208729 19 1 0 13 3 1 26 chain 277084 chr7 159138663 + 157302612 157305768 L1PA5 6144 + 2971 6144 14807 187 4 0 12 0 1 295 0 14 715 0 2 397 0 2 693 1 2 690 18 19 144 chain 2777 chr7 159138663 + 157308884 157308970 LTR19A 502 + 417 502 229074 13 11 9 10 23 24 29 chain 50909 chr7 159138663 + 157417559 157418408 L1PB1 5432 + 4605 5420 58361 24 3 0 408 16 16 50 8 7 4 1 0 20 1 0 13 16 11 11 3 1 44 6 7 16 1 0 43 1 0 16 3 0 5 16 7 13 41 36 13 1 0 22 1 0 12 1 0 16 chain 9888 chr7 159138663 + 157424134 157424240 AluY 311 + 26 132 161134 106 chain 41113 chr7 159138663 + 157458335 157458833 L1PA6 6164 + 5664 6162 67758 339 1 9 7 8 0 143 chain 13324 chr7 159138663 + 157548194 157548357 L1PA16 3655 + 3366 3530 146991 44 0 1 119 chain 18223 chr7 159138663 + 157553420 157553623 L1PA2 6032 - 1822 2021 131775 157 4 0 42 chain 167218 chr7 159138663 + 157553623 157555449 L1PA2 6032 + 4200 6032 22366 313 1 0 667 0 7 845 chain 6091 chr7 159138663 + 157600812 157600885 MER1A 529 + 18 91 184487 73 chain 19531 chr7 159138663 + 157677217 157677571 THE1B 368 - 8 368 128566 83 7 5 19 44 52 110 0 14 8 19 5 64 chain 75039 chr7 159138663 + 157847679 157848653 LTR13 1007 + 0 1007 45999 72 2 0 309 8 9 97 0 13 154 0 2 30 0 12 8 0 1 108 3 4 87 0 7 48 0 2 6 2 0 6 3 1 31 chain 3319 chr7 159138663 + 157855810 157855951 LTR12C 1709 + 810 872 218619 27 1 0 11 88 10 14 chain 43204 chr7 159138663 + 157892977 157893542 L1PB1 5432 - 334 909 64236 82 0 2 85 0 3 300 1 2 9 4 8 84 chain 59660 chr7 159138663 + 157893542 157894267 L1PB1 5432 + 3793 4525 53012 239 1 2 135 1 0 36 0 2 26 0 1 241 0 4 46 chain 14119 chr7 159138663 + 157911847 157912040 L1MB3 1562 + 720 910 144140 24 2 0 46 2 0 27 0 1 92 chain 13316 chr7 159138663 + 157912277 157912506 MER44A 345 + 79 305 147027 23 9 0 18 13 11 41 6 10 18 0 4 101 chain 34327 chr7 159138663 + 157945777 157946306 LTR1 825 + 287 825 77172 20 7 15 56 15 14 14 2 15 153 0 1 45 14 0 88 22 24 93 chain 5932 chr7 159138663 + 157966836 157966910 MER11A 1151 - 924 996 185869 28 2 0 44 chain 54741 chr7 159138663 + 157971583 157972367 L1PB3 3668 - 199 1001 55876 78 6 5 38 0 4 29 2 1 24 1 0 204 2 1 8 0 1 68 0 2 14 6 4 85 0 12 15 4 5 25 1 5 174 chain 27471 chr7 159138663 + 157975066 157975400 L1PA8A 6298 - 7 341 94742 334 chain 25702 chr7 159138663 + 157990272 157990626 THE1C 375 - 20 375 101281 5 1 0 37 0 2 17 0 2 33 1 0 64 3 1 11 7 8 175 chain 56569 chr7 159138663 + 157993967 157994714 MER4E 760 + 0 760 54814 23 1 2 29 0 1 4 1 0 103 2 0 7 6 0 84 7 8 102 1 3 79 0 3 103 0 1 14 0 13 181 chain 45608 chr7 159138663 + 157999499 157999999 L1PA2 6032 - 0 500 62394 500 chain 76019 chr7 159138663 + 158029482 158030450 LTR5_Hs 974 + 0 974 45468 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 5895 chr7 159138663 + 158071861 158071981 LTR12D 1347 - 595 859 186234 46 39 183 35 chain 30665 chr7 159138663 + 158161562 158162074 MLT2A1 477 + 0 477 83097 161 14 11 141 0 12 60 4 0 10 91 51 31 chain 123261 chr7 159138663 + 158172826 158174388 THE1B-int 1605 - 5 1605 29956 789 2 1 352 11 48 373 0 2 35 chain 3874 chr7 159138663 + 158233567 158233718 HAL1-2a_MD 234 - 118 234 209254 12 3 33 12 24 6 30 23 0 14 24 0 9 chain 4348 chr7 159138663 + 158275596 158275859 MER39 703 + 166 577 202615 15 23 145 28 62 58 16 90 120 29 chain 5399 chr7 159138663 + 158336969 158337045 MER30 238 + 14 106 190989 12 4 20 60 chain 14202 chr7 159138663 + 158364239 158364420 MER50 708 - 108 290 143874 20 0 2 94 1 0 66 chain 25243 chr7 159138663 + 158387409 158387789 MSTA 426 + 0 426 103512 108 0 21 4 1 0 20 0 6 44 5 3 30 2 0 60 1 21 73 16 20 16 chain 71794 chr7 159138663 + 158397450 158398242 L1PA3long 6157 + 5362 6153 47568 658 1 0 133 chain 2826 chr7 159138663 + 158409849 158409971 HAL1 992 + 444 573 228280 30 65 74 8 1 0 4 1 0 13 chain 8109 chr7 159138663 + 158418747 158418845 LTR38C 690 + 60 158 170440 98 chain 28029 chr7 159138663 + 158420546 158420844 AluYg6 310 + 0 298 92898 298 chain 25573 chr7 159138663 + 158429082 158429393 AluSp 311 - 1 311 101858 178 1 0 132 chain 59285 chr7 159138663 + 158450214 158450858 SVA_D 2077 + 1432 2076 53234 644 chain 21856 chr7 159138663 + 158485190 158485441 AluSp 311 + 39 290 120797 251 chain 10207 chr7 159138663 + 158489820 158490005 Tigger3b 1229 + 387 568 159591 26 17 12 73 27 28 42 chain 4006 chr7 159138663 + 158537749 158537811 MADE1 96 - 5 96 207290 24 1 30 37 chain 4497 chr7 159138663 + 158569929 158570036 Tigger1 2417 - 2014 2126 200820 35 4 5 12 16 18 19 6 8 15 chain 24887 chr7 159138663 + 158601892 158602188 AluSc 308 + 6 302 105425 296 chain 4635 chr7 159138663 + 158602228 158602283 L1MB8 1703 + 963 1018 199244 55 chain 78208 chr7 159138663 + 158627239 158628197 LTR13A 966 + 0 966 44414 76 0 4 47 0 1 75 0 1 80 2 1 99 1 0 510 0 2 11 0 2 57 chain 6629 chr7 159138663 + 158637659 158637746 MER4B 649 + 0 86 180244 23 2 1 62 chain 17614 chr7 159138663 + 158645895 158646142 MER4B 649 + 0 287 133952 54 1 0 102 8 50 8 1 0 73 chain 22343 chr7 159138663 + 158647064 158647345 L1PA7 6471 + 6182 6468 118730 132 6 15 132 4 0 7 chain 12328 chr7 159138663 + 158647346 158647516 LTR8 732 - 526 732 150899 34 0 3 21 7 36 47 0 4 61 chain 57325 chr7 159138663 + 158655369 158656115 LTR12 884 - 0 882 54324 381 0 1 57 17 5 38 1 145 151 7 9 66 0 1 28 chain 27317 chr7 159138663 + 158692231 158692580 THE1A 353 + 6 353 95215 38 0 1 62 4 3 102 10 8 133 chain 23806 chr7 159138663 + 158759455 158759934 LTR10E 629 + 0 549 111444 16 1 0 21 0 3 117 16 91 99 1 0 4 0 1 6 24 23 48 11 6 4 0 1 13 58 59 22 1 0 10 2 0 5 chain 17274 chr7 159138663 + 158775602 158775983 THE1B 368 - 0 366 134854 49 30 13 62 8 16 14 42 39 6 1 0 45 33 34 31 3 0 57 chain 123116 chr7 159138663 + 158775985 158777553 THE1B-int 1605 - 0 1604 30002 72 0 1 10 0 5 48 0 1 193 0 3 105 1 3 94 3 6 45 13 9 554 1 26 429 chain 45675 chr7 159138663 + 158786767 158787619 L1PA15 4387 + 3454 4356 62334 59 2 12 44 28 29 44 26 90 21 0 1 58 2 0 9 19 14 56 3 1 40 1 0 153 5 6 4 1 0 9 1 0 26 1 0 21 1 6 9 3 0 19 1 0 23 4 0 7 1 0 39 42 39 21 3 1 14 5 0 27 chain 3867 chr7 159138663 + 158855156 158855199 LTR12C 1709 - 270 313 209350 43 chain 309997 chr7 159138663 + 158871883 158875311 L1PA4 6152 + 2709 6143 13005 359 0 4 1098 0 1 1127 0 4 696 1 0 4 4 2 139 chain 31715 chr7 159138663 + 158905750 158906228 LTR2B 499 + 0 499 81308 14 1 0 38 47 70 322 14 13 42 chain 67900 chr7 159138663 + 158916792 158917890 L1PA14 3548 - 92 1175 49288 41 1 0 11 7 6 5 1 0 15 4 2 31 18 13 65 0 1 24 1 2 19 13 12 33 1 0 39 1 0 6 2 0 11 14 10 24 0 3 73 7 5 6 2 0 35 13 11 14 3 1 24 1 0 52 4 13 160 1 0 83 0 1 4 9 8 53 6 5 43 9 10 109 chain 3276 chr7 159138663 + 158975258 158975304 MLT1A 405 + 301 348 219424 12 1 2 33 chain 69055 chr7 159138663 + 159050846 159051596 L1PA3long 6157 - 0 749 48783 138 1 0 611 chain 16348 chr7 159138663 + 159067284 159067510 MER30 238 - 0 238 137347 39 3 0 70 7 21 84 0 1 23 chain 165901 chr7 159138663 + 159081203 159083347 L1PA7 6471 + 4263 6465 22526 34 0 1 4 0 1 117 0 1 12 0 1 65 0 2 32 0 1 9 3 7 28 0 1 203 0 28 19 1 2 124 1 0 62 0 9 149 4 5 363 0 1 676 0 7 80 8 9 135 0 1 7 2 0 6 chain 537009 chr7 159138663 + 159091068 159097202 L1PA4 6152 + 1 6143 3309 161 6 7 251 0 1 1013 1 0 290 0 1 1604 0 2 355 1 0 771 0 2 842 1 0 19 0 1 641 0 3 178 chain 30021 chr7 159138663 + 159115362 159115741 PABL_A 660 + 281 660 84740 379 chain 35187 chr7 159138663 + 159116720 159117181 MER4A1 472 + 0 472 75934 109 0 1 265 19 29 68 chain 21444 chr7 159138663 + 159119509 159119851 LTR18B 584 - 221 584 122353 109 49 68 47 0 1 23 7 8 107 chain 3234 chrX 155270560 + 60224 60259 LTR12D 1347 + 1142 1177 220360 35 chain 3836 chrX 155270560 + 60325 60369 LTR12D 1347 + 1111 1155 209838 44 chain 36074 chrX 155270560 + 61799 62245 LTR6B 557 + 0 446 74794 359 0 1 40 1 0 46 chain 38573 chrX 155270560 + 73328 74257 LTR2C 499 + 6 478 71336 176 1 4 71 459 0 178 1 0 43 chain 38667 chrX 155270560 + 152063 152992 LTR2C 499 + 6 478 71199 176 1 4 71 459 0 178 1 0 43 chain 21165 chrX 155270560 + 154178 154442 AluSp 311 + 17 282 123327 98 0 3 14 2 0 150 chain 6019 chrX 155270560 + 166388 166488 MER4D0 881 + 1 103 185062 47 8 9 31 3 4 11 chain 54877 chrX 155270560 + 167837 168808 LTR5A 1029 - 0 1027 55786 60 2 1 11 1 2 117 223 267 9 0 2 17 6 5 32 2 1 13 1 0 329 0 13 148 chain 5183 chrX 155270560 + 196088 196154 MER4B 649 - 227 292 193206 16 1 0 49 chain 4934 chrX 155270560 + 199761 199815 LTR9B 643 - 63 117 195880 54 chain 7385 chrX 155270560 + 199856 199940 AluSp 311 + 211 295 174869 84 chain 9611 chrX 155270560 + 208696 208817 AluSx 319 + 10 133 162534 54 0 2 67 chain 28387 chrX 155270560 + 344293 344601 AluY 311 + 3 311 91633 308 chain 24950 chrX 155270560 + 357982 358283 AluY 311 + 0 297 105058 33 0 1 99 6 1 163 chain 3358 chrX 155270560 + 363174 363212 tRNA-Gln-CAG 43 - 4 42 217910 38 chain 7568 chrX 155270560 + 370097 370250 THE1B 368 + 153 307 173748 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 6234 chrX 155270560 + 378569 378642 MER41C 542 - 241 314 183289 73 chain 24449 chrX 155270560 + 391391 391692 AluY 311 + 0 291 107809 64 2 0 64 3 0 157 5 0 6 chain 12506 chrX 155270560 + 394950 395101 L1PA5 6144 - 2 153 149884 151 chain 54327 chrX 155270560 + 395101 395727 L1PA3long 6157 + 5487 6142 56148 424 0 5 131 0 24 71 chain 23568 chrX 155270560 + 414857 415119 AluY 311 + 38 301 112752 94 0 1 168 chain 19224 chrX 155270560 + 415296 415526 L1PA7 6471 - 207 436 129456 223 1 0 6 chain 23717 chrX 155270560 + 415672 415956 L1PA7 6471 + 6065 6349 111955 284 chain 4732 chrX 155270560 + 424829 424887 L1PA16 3655 + 3403 3461 198145 58 chain 34181 chrX 155270560 + 432961 433402 L1PA8 5853 + 5251 5688 77375 263 13 13 37 1 0 44 2 0 74 1 0 6 chain 46778 chrX 155270560 + 437734 438288 LTR6B 557 - 0 557 61390 10 1 0 119 2 1 105 0 6 266 1 0 50 chain 20111 chrX 155270560 + 455555 455823 AluSc8 310 + 15 287 126794 116 13 14 7 0 3 132 chain 65975 chrX 155270560 + 469426 470208 L1PA7 6471 - 4 784 50115 764 1 0 12 1 0 4 chain 50083 chrX 155270560 + 471792 472389 L1PA7 6471 + 5871 6470 58957 147 0 1 302 5 6 143 chain 7240 chrX 155270560 + 479421 479502 L1PA4 6152 - 1 82 175829 81 chain 9469 chrX 155270560 + 479593 479715 L1PA7 6471 - 1 120 163222 12 1 0 58 2 0 49 chain 24442 chrX 155270560 + 479810 480102 AluY 311 + 15 306 107845 116 0 2 17 3 0 156 chain 70518 chrX 155270560 + 481019 481894 L1PA7 6471 + 5593 6469 48153 29 3 6 74 0 1 7 2 0 73 2 3 534 1 0 118 0 1 20 2 0 10 chain 53520 chrX 155270560 + 527869 528481 L1PA4 6152 - 0 612 56666 612 chain 37644 chrX 155270560 + 558191 560584 LTR7B 505 - 11 505 72632 19 0 1 222 4 25 26 1921 0 201 chain 5581 chrX 155270560 + 558559 558635 LTR7B 505 - 177 253 189266 4 0 1 38 1 0 33 chain 2938 chrX 155270560 + 558639 558670 LTR7B 505 - 278 309 226367 31 chain 2074 chrX 155270560 + 558675 558697 LTR7B 505 - 226 248 237921 22 chain 2056 chrX 155270560 + 558705 558727 LTR7B 505 - 278 300 238134 22 chain 5667 chrX 155270560 + 558731 558802 LTR7B 505 - 182 253 188416 71 chain 2633 chrX 155270560 + 558806 558836 LTR7B 505 - 278 308 231222 30 chain 4963 chrX 155270560 + 558913 558970 LTR7B 505 - 196 253 195558 57 chain 2847 chrX 155270560 + 558974 559004 LTR7B 505 - 278 308 227901 30 chain 5789 chrX 155270560 + 559067 559138 LTR7B 505 - 182 253 187263 71 chain 2847 chrX 155270560 + 559142 559172 LTR7B 505 - 278 308 227900 30 chain 2074 chrX 155270560 + 559212 559234 LTR7B 505 - 226 248 237920 22 chain 2447 chrX 155270560 + 559242 559268 LTR7B 505 - 278 304 233731 26 chain 5298 chrX 155270560 + 559268 559334 LTR7B 505 - 182 248 192032 66 chain 2691 chrX 155270560 + 559336 559373 LTR7B 505 - 249 308 230328 7 0 22 30 chain 4963 chrX 155270560 + 559450 559507 LTR7B 505 - 196 253 195559 57 chain 2847 chrX 155270560 + 559511 559541 LTR7B 505 - 278 308 227899 30 chain 3380 chrX 155270560 + 559628 559665 LTR7B 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5749 6143 79387 249 7 0 8 0 7 130 chain 52844 chrX 155270560 + 679710 680324 L1PA7 6471 - 2 615 57107 17 1 0 596 chain 4840 chrX 155270560 + 703409 703474 MLT2B4 540 + 351 415 196886 40 1 0 24 chain 49989 chrX 155270560 + 720632 721252 L1PA7 6471 + 5851 6468 59020 365 0 1 244 4 0 7 chain 8260 chrX 155270560 + 751961 752063 L1PA3long 6157 + 6055 6157 169629 102 chain 32048 chrX 155270560 + 766992 767460 LTR7B 505 + 0 498 80783 175 50 81 20 2 4 63 2 0 16 1 0 139 chain 5119 chrX 155270560 + 781877 781935 L1PA6 6164 + 5858 5916 193877 58 chain 32319 chrX 155270560 + 783658 784054 L1PA7 6471 - 6 399 80333 6 2 0 136 2 1 250 chain 34412 chrX 155270560 + 796434 796882 L1PA7 6471 - 4 446 77042 143 7 4 10 4 3 148 2 0 134 chain 3498 chrX 155270560 + 797195 797238 L1PA16 3655 + 3245 3288 215387 43 chain 47592 chrX 155270560 + 816604 817136 L1PA7 6471 + 5908 6440 60773 532 chain 15289 chrX 155270560 + 827971 828150 L1PA3long 6157 - 0 179 140515 179 chain 25756 chrX 155270560 + 843240 843542 AluY 311 + 0 296 101054 118 7 0 14 0 1 163 chain 34516 chrX 155270560 + 860358 860801 L1PA8 5853 - 6 442 76882 87 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 153 chain 49795 chrX 155270560 + 890224 890869 L1PA8 5853 - 0 637 59159 93 1 0 19 3 2 37 14 10 13 2 1 70 2 0 42 3 2 161 0 1 134 0 1 51 chain 46330 chrX 155270560 + 918419 919031 L1PA8 5853 - 63 667 61742 30 1 0 19 2 1 47 2 0 14 15 14 57 2 0 46 1 0 376 chain 26707 chrX 155270560 + 925185 925509 L1PA7 6471 - 10 333 97297 138 2 1 184 chain 17812 chrX 155270560 + 939943 940160 AluSp 311 + 69 285 133363 63 1 0 153 chain 17884 chrX 155270560 + 942908 943197 LTR6A 649 - 359 649 133153 185 1 0 11 14 15 33 23 24 22 chain 41933 chrX 155270560 + 948281 948781 LTR5_Hs 974 - 46 549 66713 68 8 7 390 1 5 33 chain 5401 chrX 155270560 + 949184 949250 MER41C 542 - 228 294 190976 66 chain 68484 chrX 155270560 + 985324 986114 L1PA4 6152 + 5361 6151 49052 423 2 0 5 0 2 360 chain 23321 chrX 155270560 + 991435 991718 AluSg 306 + 11 294 114083 283 chain 12308 chrX 155270560 + 1026931 1027088 L1PA7 6471 + 6311 6467 150982 35 8 7 114 chain 32641 chrX 155270560 + 1042712 1043147 LTR7 482 + 0 475 79781 103 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 31962 chrX 155270560 + 1105100 1105527 LTR7 482 + 8 475 80917 95 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 3834 chrX 155270560 + 1342288 1342336 MLT1H1 527 - 105 152 209875 32 1 0 15 chain 6658 chrX 155270560 + 1353512 1353610 MER4E1 777 + 346 440 180027 75 9 5 14 chain 147662 chrX 155270560 + 1353939 1355935 SVA_D 2077 + 316 2075 24928 592 50 0 6 1 0 33 110 0 4 0 1 93 48 0 10 49 0 165 1 0 127 1 0 35 31 6 13 4 0 32 0 49 38 0 3 14 6 9 85 0 2 133 1 0 303 5 0 6 chain 2960 chrX 155270560 + 1354532 1354573 SVA_D 2077 + 908 947 69119 8 3 1 30 chain 4477 chrX 155270560 + 1354621 1354683 SVA_D 2077 + 985 1047 69119 62 chain 3325 chrX 155270560 + 1354683 1354731 SVA_D 2077 + 947 996 63533 4 0 1 44 chain 1940 chrX 155270560 + 1354828 1354856 SVA_D 2077 + 1094 1123 63533 8 0 1 20 chain 2148 chrX 155270560 + 1355264 1355295 SVA_D 2077 + 1480 1511 63533 31 chain 7234 chrX 155270560 + 1375610 1375727 MER4B 649 - 305 420 175868 26 19 17 72 chain 20726 chrX 155270560 + 1381614 1381894 AluY 311 + 19 299 124871 31 0 1 77 25 26 132 2 0 13 chain 43967 chrX 155270560 + 1384332 1384827 L1PA4 6152 - 1 496 64241 495 chain 11287 chrX 155270560 + 1392012 1392147 MER4E1 777 + 12 147 155106 135 chain 21713 chrX 155270560 + 1395721 1395991 AluSc5 308 + 10 279 121341 247 2 1 21 chain 9042 chrX 155270560 + 1399395 1399501 MER4E 760 - 182 288 165365 106 chain 39391 chrX 155270560 + 1451191 1451667 L1PA7 6471 - 8 489 70180 6 0 5 239 1 0 194 0 1 36 chain 20869 chrX 155270560 + 1463781 1464043 AluY 311 + 8 265 124395 118 6 0 80 1 2 57 chain 3708 chrX 155270560 + 1556456 1556500 MLT1A0 366 - 16 60 211836 44 chain 29333 chrX 155270560 + 1579927 1580306 MLT2A1 477 + 0 373 87386 129 5 1 39 4 1 11 0 1 191 chain 25934 chrX 155270560 + 1599411 1599723 L1PA7 6471 + 6156 6469 100281 38 0 1 274 chain 33519 chrX 155270560 + 1601611 1601979 L1PA4 6152 + 5766 6134 78372 368 chain 25498 chrX 155270560 + 1623743 1624046 AluY 311 + 0 298 102227 123 3 0 7 2 0 168 chain 12315 chrX 155270560 + 1631459 1631648 THE1B 368 - 30 228 150959 98 1 0 10 1 0 16 0 1 4 14 25 15 1 0 29 chain 32443 chrX 155270560 + 1631759 1632224 L1PA8 5853 - 0 458 80123 93 1 0 19 2 1 46 1 0 6 2 1 5 1 0 74 10 8 29 11 12 85 2 1 78 chain 38349 chrX 155270560 + 1650691 1651605 L1PB1 5432 + 4705 5276 71650 277 40 5 112 293 0 15 13 0 16 28 30 7 2 0 53 2 1 16 1 0 39 chain 6099 chrX 155270560 + 1654965 1655035 MER85 139 + 16 86 184422 70 chain 43740 chrX 155270560 + 1682979 1683509 L1PA5 6144 + 5617 6142 64521 371 8 6 141 3 0 7 chain 23739 chrX 155270560 + 1724115 1724423 AluSg7 307 - 2 307 111839 11 5 0 18 15 17 259 chain 9733 chrX 155270560 + 1738312 1738442 L1PA8 5853 + 5703 5849 161924 33 8 24 89 chain 3085 chrX 155270560 + 1748897 1748935 MER74A 558 + 8 47 223229 21 0 1 17 chain 26749 chrX 155270560 + 1751573 1751908 L1PA6 6164 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1846443 MER4E1 777 - 582 777 146628 6 1 0 31 0 10 67 3 0 22 3 0 34 7 0 25 chain 37798 chrX 155270560 + 1848901 1849328 L1PA7 6471 + 6033 6460 72422 427 chain 6414 chrX 155270560 + 1856655 1856790 MER4D0 881 - 126 273 181922 58 15 15 10 19 31 33 chain 8644 chrX 155270560 + 1861597 1861708 MER41B 635 - 13 124 167518 111 chain 48408 chrX 155270560 + 1866662 1867300 L1PA8 5853 - 0 636 60172 93 1 0 19 8 7 32 10 9 14 1 0 71 2 0 44 1 0 318 0 5 24 chain 4012 chrX 155270560 + 1896852 1896901 L1P5 443 - 155 204 207203 49 chain 50181 chrX 155270560 + 1916299 1916902 L1PA8 5853 - 0 597 58879 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 46 1 0 246 0 1 59 chain 6272 chrX 155270560 + 1917483 1917550 L1PA8 5853 - 173 240 182990 67 chain 13134 chrX 155270560 + 1934163 1934312 L1PA5 6144 - 12 161 147708 149 chain 47169 chrX 155270560 + 1941498 1942085 L1PA7 6471 + 5883 6469 61074 425 1 2 149 2 0 10 chain 33708 chrX 155270560 + 1955019 1955555 LTR61 567 - 0 567 78086 49 1 0 11 1 0 65 21 77 141 3 4 30 3 0 77 0 1 27 12 0 19 21 15 32 4 0 19 chain 6302 chrX 155270560 + 1956075 1956152 THE1B 368 - 291 368 182781 77 chain 5203 chrX 155270560 + 1956236 1956294 THE1B 368 - 304 362 192996 58 chain 6302 chrX 155270560 + 1956371 1956448 THE1B 368 - 291 368 182780 77 chain 34487 chrX 155270560 + 1958948 1959360 L1PA7 6471 - 1 411 76930 28 1 0 144 2 1 237 chain 21396 chrX 155270560 + 1962948 1963207 AluSc8 310 + 32 290 122525 102 2 1 155 chain 78461 chrX 155270560 + 1965750 1966680 L1PA6 6164 - 2 931 44290 6 4 0 136 1 2 171 0 1 531 0 1 81 chain 23908 chrX 155270560 + 1970124 1970417 AluSc 308 + 10 304 110869 267 0 1 26 chain 35696 chrX 155270560 + 1975405 1975819 L1PA5 6144 - 1 412 75276 6 3 0 405 chain 37620 chrX 155270560 + 1982756 1983254 L1PA8 5853 - 1 492 72660 92 1 0 19 2 1 47 1 0 14 1 0 71 3 1 45 1 0 201 chain 15605 chrX 155270560 + 1997871 1998188 THE1B 368 - 30 353 139567 26 1 2 7 2 0 60 7 15 11 4 8 8 1 0 4 4 0 6 15 14 40 29 30 92 chain 19265 chrX 155270560 + 1998854 1999073 L1PA7 6471 + 6242 6461 129333 219 chain 56875 chrX 155270560 + 2010276 2010943 L1PA6 6164 - 21 686 54616 139 2 0 526 chain 4480 chrX 155270560 + 2011352 2011431 THE1B 368 + 253 327 201019 47 7 1 9 1 2 15 chain 6389 chrX 155270560 + 2017401 2017503 MER66A 478 - 0 104 182109 22 18 20 62 chain 17889 chrX 155270560 + 2025608 2025840 LTR62 707 - 98 330 133138 208 0 1 12 1 0 11 chain 29580 chrX 155270560 + 2026534 2026894 L1PA7 6471 + 6100 6461 86271 184 0 1 12 2 1 135 0 1 27 chain 23295 chrX 155270560 + 2036192 2036476 AluSp 311 + 5 289 114231 284 chain 17402 chrX 155270560 + 2036567 2037489 LTR19C 757 - 166 662 134503 104 63 53 22 8 5 9 0 4 60 1 0 10 7 0 7 5 12 10 12 9 14 525 115 44 9 6 12 chain 17788 chrX 155270560 + 2038261 2038498 AluSz 310 + 3 236 133453 38 1 0 70 2 1 21 2 0 103 chain 17339 chrX 155270560 + 2051749 2051953 AluY 311 + 105 307 134682 17 3 0 4 0 1 180 chain 38918 chrX 155270560 + 2126571 2127010 L1PA7 6471 - 2 441 70843 439 chain 25449 chrX 155270560 + 2133989 2134282 AluYk4 311 - 17 310 102463 293 chain 25424 chrX 155270560 + 2136892 2137334 LTR21B 408 + 0 408 102580 61 8 4 4 1 0 28 1 0 5 5 0 124 41 0 14 1 0 4 13 31 70 5 7 4 1 0 52 chain 7466 chrX 155270560 + 2163659 2164176 MER4A1 472 + 288 472 174368 52 409 74 14 0 2 42 chain 46212 chrX 155270560 + 2169202 2169783 LTR10C 591 + 0 591 61839 14 0 5 372 1 2 117 2 1 26 0 5 49 chain 3234 chrX 155270560 + 2188823 2188863 LTR12 884 + 228 268 220347 40 chain 3678 chrX 155270560 + 2188960 2189011 LTR12 884 + 181 274 212267 27 0 42 24 chain 7685 chrX 155270560 + 2190934 2191031 L1PB3 3668 + 3291 3388 173010 97 chain 3806 chrX 155270560 + 2205509 2205557 MLT1D 503 + 0 50 210290 20 0 2 28 chain 3195 chrX 155270560 + 2205665 2205704 MLT1D 503 + 9 50 221022 11 0 2 28 chain 3064 chrX 155270560 + 2205811 2205850 MLT1D 503 + 9 50 223679 11 0 2 28 chain 54838 chrX 155270560 + 2212973 2213627 L1PA7 6471 + 5817 6468 55810 151 0 1 168 1 0 302 0 1 21 4 0 7 chain 60322 chrX 155270560 + 2223310 2224032 L1PA7 6471 + 5739 6461 52668 722 chain 24969 chrX 155270560 + 2225532 2225837 AluY 311 + 10 303 104963 56 2 0 60 0 1 169 11 0 7 chain 25620 chrX 155270560 + 2230389 2230706 L1PA7 6471 + 6084 6408 101625 280 6 13 31 chain 4717 chrX 155270560 + 2230706 2230765 L1PA7 6471 + 6409 6468 198316 59 chain 4442 chrX 155270560 + 2231348 2231404 LTR39 781 + 505 564 201425 9 0 3 47 chain 58111 chrX 155270560 + 2231719 2232830 MER4E 760 - 0 760 53921 316 12 11 69 1 3 86 0 2 6 350 0 97 5 1 169 chain 9564 chrX 155270560 + 2234735 2234862 MER85 139 + 0 138 162765 42 0 1 46 1 11 38 chain 13704 chrX 155270560 + 2253246 2253477 MER4A1 472 - 45 297 145588 25 5 7 103 37 56 61 chain 8762 chrX 155270560 + 2254906 2255019 L1PA8 5853 - 0 112 166858 93 1 0 19 chain 23905 chrX 155270560 + 2258088 2258390 L1PA7 6471 + 6168 6469 110881 249 10 0 7 0 9 36 chain 2780 chrX 155270560 + 2259627 2259658 MLT1C 463 - 359 390 229009 31 chain 49038 chrX 155270560 + 2262286 2262911 L1PA7 6471 + 5709 6467 59722 84 1 0 139 9 143 24 9 7 30 0 1 320 0 1 9 chain 31331 chrX 155270560 + 2264686 2265066 L1PA7 6471 - 2 375 81929 13 11 0 41 0 4 315 chain 33202 chrX 155270560 + 2268816 2269287 L1PA8 5853 + 5390 5853 78882 71 1 0 103 6 5 39 2 0 74 1 0 6 8 7 45 2 1 16 5 4 92 chain 4207 chrX 155270560 + 2273592 2273639 MADE1 96 + 49 96 204453 47 chain 10215 chrX 155270560 + 2283821 2283956 L1PA8 5853 + 5674 5805 159540 5 1 0 12 1 0 49 2 1 19 1 0 45 chain 2935 chrX 155270560 + 2300491 2300572 HAL1-2a_MD 234 + 57 111 226423 6 3 0 20 28 4 24 chain 18460 chrX 155270560 + 2302742 2302964 L1PA2 6032 + 5808 6032 131614 79 0 2 143 chain 3102 chrX 155270560 + 2314285 2314318 MLT1C 463 - 358 391 222893 33 chain 20982 chrX 155270560 + 2327319 2327597 L1PA7 6471 - 4 280 123983 9 1 0 135 0 1 6 3 1 124 chain 53569 chrX 155270560 + 2337431 2338025 L1PA4 6152 + 5563 6152 56631 583 5 0 6 chain 42320 chrX 155270560 + 2346324 2346819 L1PA7 6471 + 5971 6468 66245 32 0 2 463 chain 24286 chrX 155270560 + 2351450 2351812 L1PA8 5853 - 9 365 108733 84 1 0 19 2 1 40 23 21 69 2 0 45 2 1 48 0 1 27 chain 13814 chrX 155270560 + 2384849 2385123 AluSq2 311 + 25 301 145202 107 86 88 81 chain 37438 chrX 155270560 + 2431035 2431491 PABL_B 668 - 213 668 72909 177 1 0 278 chain 12545 chrX 155270560 + 2433596 2433761 L1PA8 5853 - 0 163 150060 93 1 0 19 3 2 49 chain 3782 chrX 155270560 + 2445966 2446010 THE1B 368 - 1 45 210642 44 chain 57778 chrX 155270560 + 2452547 2453228 L1PA7 6471 + 5786 6468 54097 649 3 4 29 chain 39754 chrX 155270560 + 2467052 2467636 MER41A 554 - 8 553 69682 23 1 0 50 0 5 12 1 0 25 1 2 32 0 1 26 38 0 7 5 6 42 0 1 140 13 4 100 0 1 68 chain 22452 chrX 155270560 + 2471962 2472232 AluSc 308 + 12 283 118235 192 1 2 77 chain 27637 chrX 155270560 + 2472696 2473051 THE1A 353 - 0 353 94243 155 1 0 88 4 2 18 5 6 84 chain 24653 chrX 155270560 + 2480472 2480855 MLT2A1 477 - 92 477 106707 74 0 1 8 4 10 88 0 3 21 0 1 9 50 41 129 chain 3990 chrX 155270560 + 2486552 2486631 MSTB1 431 + 351 431 207532 31 21 22 27 chain 25097 chrX 155270560 + 2513138 2513480 THE1B 368 - 0 368 104311 64 2 0 128 0 1 8 2 0 84 10 39 44 chain 32368 chrX 155270560 + 2517978 2518400 L1PA8 5853 + 5438 5853 80244 124 1 0 46 2 0 74 1 0 5 4 3 50 2 1 19 1 0 93 chain 44716 chrX 155270560 + 2522581 2523111 MER41A 554 + 18 553 63365 390 0 4 18 0 1 122 chain 7876 chrX 155270560 + 2602706 2602830 MER1A 529 - 0 127 171830 58 17 16 32 0 4 17 chain 44678 chrX 155270560 + 2605904 2606422 L1PA7 6471 + 5927 6447 63400 91 0 1 100 0 1 327 chain 4114 chrX 155270560 + 2649930 2649980 MADE1 96 - 1 51 205723 50 chain 4368 chrX 155270560 + 2650090 2650139 MADE1 96 + 45 94 202337 49 chain 29688 chrX 155270560 + 2664472 2664895 MLT2A1 477 - 0 450 85874 51 9 41 186 1 2 28 4 1 38 8 5 98 chain 31407 chrX 155270560 + 2672559 2672996 MLT2A1 477 - 0 477 81801 37 24 56 119 1 10 50 0 1 24 0 1 9 7 4 166 chain 41622 chrX 155270560 + 2694150 2694702 LTR6B 557 - 0 557 67129 22 0 1 6 0 5 22 0 1 5 13 14 82 4 0 44 0 1 304 1 0 22 0 1 27 chain 47783 chrX 155270560 + 2699101 2699735 PABL_A 660 + 0 660 60629 63 0 5 16 0 9 263 0 1 105 12 14 33 1 3 123 0 7 18 chain 35541 chrX 155270560 + 2717339 2717886 PRIMA4_LTR 623 - 0 623 75489 25 12 22 22 4 0 8 2 1 64 1 36 51 2 3 110 0 1 17 0 2 13 17 26 16 5 28 178 chain 15435 chrX 155270560 + 2722183 2722448 LTR8 732 - 459 724 140091 73 52 53 11 1 0 128 chain 26256 chrX 155270560 + 2768566 2768971 LTR7 482 + 0 475 98990 69 6 95 16 51 0 44 8 40 211 chain 3681 chrX 155270560 + 2773979 2774023 MER58A 224 - 136 180 212218 44 chain 5467 chrX 155270560 + 2784587 2784664 L1MA5A 2387 + 2230 2306 190335 65 1 0 11 chain 4417 chrX 155270560 + 2802192 2802307 L1MA5A 2387 + 2190 2275 201720 16 54 24 45 chain 14525 chrX 155270560 + 2802673 2802849 MER4A1 472 + 296 472 142809 176 chain 4479 chrX 155270560 + 2808118 2808174 MER4E 760 + 693 751 201024 42 0 2 14 chain 42497 chrX 155270560 + 2808548 2809097 LTR6B 557 - 0 557 66018 22 0 1 33 0 1 4 0 1 95 4 0 45 0 1 64 0 8 225 8 7 22 0 1 27 chain 28100 chrX 155270560 + 2811656 2812426 L1PB1 5432 + 4933 5427 92647 61 11 6 91 1 0 12 249 14 21 1 0 9 1 0 11 5 1 9 2 0 52 2 1 15 1 0 44 1 0 13 50 34 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 21803 chrX 155270560 + 2819385 2819833 THE1B 368 + 0 368 121007 33 0 1 10 5 20 64 78 0 21 56 39 7 3 0 64 0 2 107 chain 7652 chrX 155270560 + 2829088 2829878 MER4D1 891 + 55 193 173214 39 638 0 10 29 15 74 chain 51297 chrX 155270560 + 2843973 2844623 PABL_A 660 - 10 660 58114 483 2 1 102 0 1 63 chain 6427 chrX 155270560 + 2845189 2845281 MER51A 677 + 0 93 181810 41 10 11 41 chain 44060 chrX 155270560 + 2855459 2856032 PABL_B 668 + 92 668 64149 14 4 10 165 1 0 8 1 0 153 1 0 111 0 1 32 6 5 77 chain 24994 chrX 155270560 + 2859595 2859932 MER4E 760 + 416 753 104830 53 8 10 53 4 2 219 chain 56325 chrX 155270560 + 2879414 2880353 MER4E1 777 + 0 777 54950 22 3 0 86 0 2 43 9 12 95 8 0 23 8 4 178 159 0 77 3 9 90 0 1 135 chain 112893 chrX 155270560 + 2898606 2900118 THE1B-int 1605 + 0 1591 33406 12 17 18 202 0 1 4 5 4 61 10 17 71 4 68 34 8 15 796 3 2 4 0 1 281 chain 53332 chrX 155270560 + 2912619 2913279 PABL_A 660 - 0 660 56812 660 chain 23537 chrX 155270560 + 2919355 2919636 AluY 311 + 21 301 112918 105 0 1 60 2 0 114 chain 5914 chrX 155270560 + 2926137 2926210 L1MB8 1703 - 195 268 186053 73 chain 8325 chrX 155270560 + 2933550 2933658 L1PA16 3655 - 153 261 169253 67 1 0 4 0 1 36 chain 4471 chrX 155270560 + 2962371 2962424 LTR1C 686 - 16 69 201108 53 chain 21167 chrX 155270560 + 2964234 2964510 LTR9 672 - 396 672 123319 131 3 0 39 0 1 28 1 3 74 chain 31189 chrX 155270560 + 2966231 2966832 MER4A1_ 611 + 0 611 82184 45 0 1 78 1 3 78 14 11 34 39 45 18 1 0 4 10 11 27 68 73 108 14 12 49 0 1 13 chain 528683 chrX 155270560 + 2977365 2983479 L1PA6 6164 + 0 6159 4337 184 1 8 29 0 1 195 13 12 36 1 0 278 1 2 465 1 2 461 0 12 528 0 2 2286 1 3 488 0 1 42 0 1 666 0 18 276 0 1 162 chain 15134 chrX 155270560 + 2988635 2988978 L1PB1 5432 - 6 318 140962 4 1 0 18 1 0 11 1 0 23 1 0 21 50 36 11 1 0 5 2 1 16 4 3 41 1 0 15 2 1 51 3 1 9 2 0 3 2 0 12 3 2 4 1 0 24 chain 11528 chrX 155270560 + 2989651 2989839 L1P5 443 - 100 296 154186 113 9 17 11 16 16 39 chain 18522 chrX 155270560 + 3008700 3008950 L1PA16 3655 - 122 371 131443 203 1 2 38 2 0 6 chain 17454 chrX 155270560 + 3034202 3034620 L1PB1 5432 + 5038 5427 134367 60 6 7 9 5 0 20 1 0 13 1 0 9 2 0 3 2 0 9 33 39 13 2 1 15 1 0 37 9 8 15 14 1 30 8 5 14 2 1 23 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 19318 chrX 155270560 + 3037730 3038002 MER57A1 433 + 0 272 129186 222 18 18 32 chain 147362 chrX 155270560 + 3039944 3041570 L1PA3long 6157 - 8 1637 24987 104 0 1 34 0 1 1132 0 1 356 chain 26537 chrX 155270560 + 3062123 3062475 MER41A 554 + 204 554 97903 199 5 4 123 6 5 19 chain 34122 chrX 155270560 + 3081750 3082182 MLT2A1 477 + 0 469 77446 169 4 1 11 0 1 22 0 1 194 3 41 29 chain 51892 chrX 155270560 + 3087850 3088579 LTR12D 1347 - 10 942 57689 48 0 152 55 1 0 33 1 0 27 27 0 80 7 20 43 0 2 26 1 0 145 18 53 86 0 31 131 chain 37887 chrX 155270560 + 3090206 3090809 LTR8 732 + 39 731 72300 118 0 6 25 12 13 40 6 9 62 11 38 77 25 80 20 19 16 188 chain 16180 chrX 155270560 + 3100758 3101141 THE1D 372 + 0 372 137818 56 66 56 46 78 81 44 8 4 85 chain 42039 chrX 155270560 + 3102951 3103488 MER41A 554 - 23 554 66574 137 6 0 394 chain 10937 chrX 155270560 + 3103912 3104050 LTR12F 595 - 0 143 156463 40 0 4 85 1 2 12 chain 28283 chrX 155270560 + 3112192 3112759 L1PA15 4387 - 31 552 91995 28 6 1 12 3 1 44 6 3 50 1 0 10 10 6 16 2 1 54 1 0 26 1 0 15 1 0 76 47 25 51 1 0 4 1 0 19 0 1 4 23 20 16 8 7 31 chain 17495 chrX 155270560 + 3142993 3143337 THE1B 368 + 0 368 134277 125 0 19 9 95 90 41 7 17 67 chain 9240 chrX 155270560 + 3146507 3146621 MER41B 635 + 512 626 164354 114 chain 19903 chrX 155270560 + 3172952 3173339 MSTA 426 - 21 426 127468 91 0 3 34 62 52 74 26 32 32 15 34 53 chain 13694 chrX 155270560 + 3179930 3180270 L1PB1 5432 - 5 318 145619 4 1 0 5 1 0 14 1 0 9 0 3 22 1 0 26 20 17 19 28 16 11 1 0 41 10 9 10 2 1 50 20 14 7 5 0 8 0 3 24 chain 13991 chrX 155270560 + 3184639 3184974 L1PB1 5432 - 68 367 144606 18 2 0 14 42 30 5 1 0 16 1 0 45 6 5 10 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 8 13 0 22 10 13 30 chain 3748 chrX 155270560 + 3185567 3185617 MER82 654 + 355 404 211188 18 1 0 31 chain 1066 chrX 155270560 + 3190949 3191093 L1PB4 2604 - 52 196 123981 144 chain 10177 chrX 155270560 + 3191121 3191278 THE1B 368 + 4 162 159735 102 28 29 27 chain 158632 chrX 155270560 + 3191289 3193147 L1PA6 6164 - 11 1865 23514 65 20 0 772 0 4 46 0 7 760 0 2 135 4 8 29 2 1 25 chain 20872 chrX 155270560 + 3193147 3193383 L1PA6 6164 + 4056 4299 124065 57 0 7 179 chain 1369 chrX 155270560 + 3193599 3193784 L1PB4 2604 - 219 403 123981 154 1 0 30 chain 17800 chrX 155270560 + 3195575 3195951 MSTA 426 - 12 426 133404 97 1 21 31 77 71 46 36 60 88 chain 18219 chrX 155270560 + 3209326 3209639 THE1C 375 + 2 375 132284 106 0 22 8 73 111 126 chain 27547 chrX 155270560 + 3260032 3260390 L1PA8A 6298 + 5913 6289 94513 25 0 19 117 8 7 208 chain 29158 chrX 155270560 + 3291421 3291775 THE1B 368 - 0 368 88265 199 1 0 114 0 15 40 chain 5908 chrX 155270560 + 3299623 3299709 Tigger2a 444 + 182 267 186109 37 5 4 44 chain 25392 chrX 155270560 + 3309773 3310073 AluSp 311 + 11 311 102728 300 chain 36850 chrX 155270560 + 3316733 3317224 MER41A 554 + 0 554 73734 87 5 15 196 0 2 57 8 59 138 chain 29331 chrX 155270560 + 3318477 3318946 MER4D1 891 + 286 891 87392 4 1 0 16 1 0 5 0 1 53 1 0 27 20 155 19 2 1 29 1 8 40 6 3 41 10 10 85 0 1 38 1 0 69 chain 7571 chrX 155270560 + 3341508 3341621 L1PB4 2604 - 76 195 173719 36 12 18 65 chain 4479 chrX 155270560 + 3344900 3344985 HAL1-2a_MD 234 - 133 224 201031 20 6 0 24 0 18 15 7 1 13 chain 31003 chrX 155270560 + 3351653 3352237 L1PB1 5432 - 12 552 82503 16 1 0 11 1 0 23 1 0 24 2 0 13 44 31 6 2 0 15 1 0 45 7 6 9 2 1 52 18 12 11 0 13 18 42 12 96 0 2 124 chain 6011 chrX 155270560 + 3358510 3358734 L1PA10 4194 - 3838 4016 185130 21 2 0 22 59 32 9 2 0 22 1 0 8 3 2 8 2 0 9 25 19 5 3 0 10 2 0 11 chain 13947 chrX 155270560 + 3382368 3382553 THE1D 372 - 0 183 144765 35 2 1 110 2 1 36 chain 14209 chrX 155270560 + 3391482 3391682 HERVH-int 3825 - 3558 3780 143850 120 0 18 51 17 21 12 chain 28943 chrX 155270560 + 3391738 3392161 LTR7B 505 - 10 505 89259 41 14 13 79 1 0 52 0 88 27 35 11 69 0 10 105 chain 9121 chrX 155270560 + 3411369 3411481 L1P5 443 + 230 342 164961 112 chain 3077 chrX 155270560 + 3411892 3412028 MLT2B4 540 + 374 415 223377 17 95 0 24 chain 7871 chrX 155270560 + 3413023 3413244 L1MA7 2200 - 112 315 171862 32 16 5 49 63 52 32 8 12 21 chain 84078 chrX 155270560 + 3420667 3421962 L1PB1 5432 + 4221 5427 41868 405 3 0 196 0 12 8 0 1 26 0 1 116 2 1 112 21 19 20 1 0 9 1 0 9 8 4 7 2 0 53 85 19 34 8 7 21 19 7 19 3 1 4 1 0 14 2 0 24 1 0 20 2 1 13 1 0 18 2 0 5 chain 3313 chrX 155270560 + 3421690 3421728 L1PB1 5432 + 5178 5216 218719 38 chain 22697 chrX 155270560 + 3426330 3426692 THE1B 368 - 0 368 117087 56 7 6 63 7 15 14 0 4 8 0 1 8 31 24 52 7 8 109 chain 4334 chrX 155270560 + 3431879 3431930 MADE1 96 + 45 96 202783 51 chain 9727 chrX 155270560 + 3455954 3456085 LTR9B 643 + 428 561 161953 47 0 1 55 1 2 28 chain 7192 chrX 155270560 + 3468916 3469022 MER66A 478 + 373 478 176129 77 7 6 22 chain 30370 chrX 155270560 + 3471182 3471616 LTR7Y 441 - 0 441 83738 197 68 84 57 9 0 103 chain 294558 chrX 155270560 + 3472867 3477768 HERVH-int 3825 - 0 3825 13727 376 1 4 6 3 0 101 8 218 39 9 11 339 0 1 281 0 1 427 0 10 295 8 33 119 2 0 122 0 1 302 1 0 276 1187 0 27 0 3 52 0 3 12 0 2 7 0 1 35 21 0 24 1 0 25 40 20 21 126 34 7 4 0 10 1 0 10 1 0 39 5 0 531 chain 51855 chrX 155270560 + 3475587 3476148 L1PA2 6032 - 605 1170 57715 371 0 4 190 chain 54788 chrX 155270560 + 3476148 3476742 L1PA2 6032 + 5432 6027 55849 470 0 1 124 chain 7537 chrX 155270560 + 3477047 3477160 HERVH-int 3825 - 3235 3342 161231 10 2 1 8 5 4 4 0 1 29 5 0 50 chain 30184 chrX 155270560 + 3477768 3478202 LTR7Y 441 - 0 441 84235 197 68 84 57 9 0 103 chain 16958 chrX 155270560 + 3489545 3489809 Tigger3a 397 + 30 377 135707 62 13 93 148 17 20 24 chain 7036 chrX 155270560 + 3502739 3502856 MER1A 529 + 32 150 177204 30 22 23 65 chain 3832 chrX 155270560 + 3504375 3504418 MER53 195 + 150 193 209891 43 chain 16907 chrX 155270560 + 3509362 3509630 LTR7 482 + 164 477 135828 43 5 16 31 7 38 13 0 1 56 4 5 52 13 14 44 chain 39447 chrX 155270560 + 3510064 3510693 LTR9B 643 - 0 638 70097 40 17 15 81 0 7 29 0 1 15 30 31 21 7 9 45 17 16 105 3 4 18 6 5 64 7 8 124 chain 3082 chrX 155270560 + 3514463 3514526 MER20 218 + 32 76 223298 10 19 0 34 chain 4684 chrX 155270560 + 3519624 3519689 L1MA5A 2387 + 2241 2305 198703 54 1 0 10 chain 13139 chrX 155270560 + 3545010 3545508 L1MA5A 2387 + 1590 1778 147688 46 3 0 58 4 0 41 303 0 43 chain 37320 chrX 155270560 + 3609037 3609562 HERV1_LTRb 511 - 0 511 73061 42 0 1 6 17 7 359 20 14 31 16 17 34 chain 43566 chrX 155270560 + 3619630 3620163 MER41A 554 + 13 546 64725 533 chain 10995 chrX 155270560 + 3650477 3650597 MER41B 635 - 184 304 156223 120 chain 5345 chrX 155270560 + 3659366 3659424 L1PA5 6144 + 6071 6129 191591 58 chain 15627 chrX 155270560 + 3667652 3667980 L1PA15 4387 - 77 396 139502 37 11 8 48 1 0 10 4 0 22 1 0 31 56 54 68 8 9 26 0 1 5 chain 26427 chrX 155270560 + 3668983 3669340 THE1C 375 - 12 373 98313 13 1 0 75 0 2 50 14 17 204 chain 6030 chrX 155270560 + 3671639 3671718 L1PA11 4918 + 4431 4507 184976 41 2 0 17 1 0 18 chain 7717 chrX 155270560 + 3675154 3675275 LTR36 617 - 488 607 172814 65 0 1 4 2 0 9 7 6 34 chain 25628 chrX 155270560 + 3707099 3707407 MER41A 554 - 246 554 101591 308 chain 13805 chrX 155270560 + 3711960 3712296 L1PB1 5432 - 6 312 145252 4 1 0 18 1 0 12 1 0 22 1 0 17 53 40 17 3 0 3 0 1 12 5 4 34 6 5 16 2 1 52 2 0 7 11 7 8 1 0 8 1 0 18 chain 3819 chrX 155270560 + 3713589 3713633 MLT1B 390 - 58 102 210102 44 chain 24371 chrX 155270560 + 3718076 3718406 L1PA16 3655 - 81 410 108254 163 0 1 120 8 6 39 chain 14563 chrX 155270560 + 3721614 3721867 MER75B 242 - 0 242 142698 26 25 18 22 5 1 108 15 15 52 chain 5421 chrX 155270560 + 3722488 3722561 L1MA5A 2387 + 2234 2306 190795 61 1 0 11 chain 25833 chrX 155270560 + 3727015 3727399 LTR7 482 + 0 475 100734 101 10 14 17 0 51 41 5 37 44 0 1 76 0 2 35 14 15 41 chain 10102 chrX 155270560 + 3739686 3739833 L1MA4 2864 - 171 316 160078 18 3 0 64 11 12 51 chain 6460 chrX 155270560 + 3756418 3756491 tRNA-Ile-ATC 73 - 0 73 181561 73 chain 117761 chrX 155270560 + 3758011 3759529 THE1A-int 1579 + 0 1579 31875 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 155270560 + 3776948 3777423 LTR2B 499 + 5 497 73015 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 9980 chrX 155270560 + 3778099 3778246 L1MA4 2864 - 171 316 160676 18 3 0 64 11 12 51 chain 6460 chrX 155270560 + 3794842 3794915 tRNA-Ile-ATC 73 - 0 73 181560 73 chain 5997 chrX 155270560 + 3795256 3795329 tRNA-Ile-ATC 73 - 0 73 185278 73 chain 117883 chrX 155270560 + 3796435 3797953 THE1A-int 1579 + 0 1579 31840 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 155270560 + 3815372 3815847 LTR2B 499 + 5 497 73014 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 9980 chrX 155270560 + 3816525 3816672 L1MA4 2864 - 171 316 160675 18 3 0 64 11 12 51 chain 6460 chrX 155270560 + 3833271 3833344 tRNA-Ile-ATC 73 - 0 73 181559 73 chain 5997 chrX 155270560 + 3833685 3833758 tRNA-Ile-ATC 73 - 0 73 185277 73 chain 117761 chrX 155270560 + 3834864 3836382 THE1A-int 1579 + 0 1579 31874 15 0 2 171 1 0 4 0 1 261 1 2 46 5 4 49 0 27 57 0 8 567 3 13 223 0 14 48 1 0 57 0 1 9 chain 37362 chrX 155270560 + 3853811 3854286 LTR2B 499 + 5 497 73013 7 0 1 58 3 0 40 3 22 175 0 1 8 1 0 180 chain 9980 chrX 155270560 + 3854963 3855110 L1MA4 2864 - 171 316 160674 18 3 0 64 11 12 51 chain 61687 chrX 155270560 + 3882394 3883154 MER4E1 777 + 0 769 52042 20 1 3 73 0 1 254 2 1 190 2 9 218 chain 37936 chrX 155270560 + 3883915 3884356 LTR2 463 + 2 463 72226 160 0 21 6 1 0 274 chain 186840 chrX 155270560 + 3884713 3886727 L1PA2 6032 - 0 2014 20345 2014 chain 521873 chrX 155270560 + 3886730 3893750 HERVE_a-int 7009 + 186 6997 4973 73 11 7 25 8 6 4 1 0 8 1 0 14 47 37 18 28 0 35 4 2 24 1 0 45 1 0 22 1 0 52 1 0 34 1 0 98 1 0 12 1 0 15 2 1 4 0 1 25 15 13 55 2 0 27 1 0 66 1 0 27 1 0 8 1 0 73 2 1 32 1 0 30 10 8 16 2 1 51 1 0 21 1 0 15 4 2 4 1 0 12 4 0 27 2 0 14 1 0 23 1 0 5 1 0 7 1 0 10 2 1 4 1 0 5 1 0 55 4 2 57 1 0 23 1 0 16 1 0 114 2 1 19 1 0 19 2 1 10 2 1 18 1 0 4 5 7 4 1 0 10 9 8 29 16 15 39 1 0 10 0 3 47 2 1 35 1 0 5 1 0 37 1 0 46 1 0 21 1 0 17 1 0 24 1 0 13 1 0 93 2 1 23 11 9 26 16 8 17 7 5 6 1 0 136 11 10 14 1 0 38 1 0 168 1 0 170 18 8 6 1 0 221 1 0 88 1 0 495 1 0 1754 9 0 111 1 0 29 1 0 8 1 0 72 1 0 10 4 0 41 1 0 22 2 1 87 3 2 10 1 0 253 8 6 101 1 0 15 1 0 3 1 0 77 1 0 12 1 0 77 5 3 136 1 0 44 1 0 32 1 0 9 5 4 13 1 0 5 2 0 7 1 0 39 1 0 19 1 0 47 5 3 27 8 6 55 2 1 9 4 0 26 3 0 54 3 1 26 1 0 31 1 0 6 17 14 24 2 0 34 4 2 15 32 24 25 2 0 6 chain 39299 chrX 155270560 + 3893768 3894228 LTR2 463 + 0 463 70323 55 0 3 405 chain 107561 chrX 155270560 + 3900167 3901538 L1P3 4156 + 405 1796 34834 65 1 0 104 3 0 165 0 5 99 1 0 135 4 5 267 12 31 515 chain 4715 chrX 155270560 + 3903058 3903117 MLT1C 463 + 43 102 198332 59 chain 50731 chrX 155270560 + 3906775 3907411 L1PA8 5853 - 0 626 58480 93 1 0 19 2 1 52 1 0 8 1 0 73 3 1 42 1 0 108 3 0 229 chain 14848 chrX 155270560 + 3926954 3927150 MER107 203 - 1 203 141786 14 9 15 173 chain 25842 chrX 155270560 + 3935769 3936137 THE1B 368 - 0 368 100691 75 1 0 100 2 0 12 22 10 111 1 16 44 chain 27320 chrX 155270560 + 3944710 3945089 L1PA16 3655 + 3201 3579 95209 85 22 20 203 0 1 69 chain 36833 chrX 155270560 + 3956050 3956543 LTR3B_ 500 + 6 500 73758 143 12 13 140 2 1 29 4 1 9 12 16 142 chain 144266 chrX 155270560 + 3971792 3973493 L1PA7 6471 - 7 1718 25434 5 2 0 322 1 0 108 0 1 7 0 1 160 0 4 13 0 1 218 0 3 154 0 1 103 0 2 608 chain 3894 chrX 155270560 + 4026492 4026537 MADE1 96 + 51 96 208947 45 chain 36786 chrX 155270560 + 4028109 4028508 L1PA2 6032 - 1 400 73816 399 chain 24115 chrX 155270560 + 4050655 4051042 MLT2A2 560 + 0 500 109668 169 68 67 59 0 98 13 0 11 41 0 5 37 chain 98365 chrX 155270560 + 4071986 4073113 L1PA7 6471 - 1374 2505 36886 428 0 4 699 chain 111727 chrX 155270560 + 4073113 4074439 L1PA7 6471 + 5134 6469 33748 186 0 1 300 1 0 82 0 1 110 4 7 141 0 4 357 0 1 145 chain 27768 chrX 155270560 + 4089231 4089587 THE1B 368 - 0 368 93810 172 2 0 22 5 4 115 0 15 40 chain 36125 chrX 155270560 + 4091073 4091621 MER1A 529 + 0 529 74734 13 46 36 32 0 4 192 0 1 171 31 17 63 chain 15242 chrX 155270560 + 4122802 4122999 Tigger2 2703 + 2334 2531 140661 197 chain 16759 chrX 155270560 + 4136284 4136566 L1PA15 4387 + 4102 4366 136235 28 1 0 55 1 0 19 4 0 12 1 0 40 17 14 43 2 0 12 9 4 27 1 0 10 chain 36075 chrX 155270560 + 4144479 4144968 L1PB 1623 - 140 632 74792 29 2 1 7 1 0 147 1 3 19 0 1 43 2 0 170 0 4 68 chain 24459 chrX 155270560 + 4144968 4145654 L1PB1 5432 + 4933 5413 107761 94 19 20 5 1 0 51 174 0 11 1 0 24 26 20 11 3 1 50 2 1 16 4 3 40 1 0 16 1 0 4 2 0 13 51 37 20 1 0 22 1 0 12 1 0 9 chain 18694 chrX 155270560 + 4153342 4153834 L1PB1 5432 - 131 483 130963 5 1 0 12 6 5 41 2 1 18 6 5 45 3 1 9 6 2 13 3 2 6 1 0 22 1 0 11 128 5 101 12 8 40 chain 35727 chrX 155270560 + 4161940 4162437 MER1A 529 + 31 524 75232 40 0 14 9 3 0 4 8 0 359 16 9 58 chain 21900 chrX 155270560 + 4164157 4164427 L1PA16 3655 - 77 347 120622 270 chain 7722 chrX 155270560 + 4179837 4179950 MLT1A0 366 + 25 139 172771 7 1 0 10 4 6 91 chain 8760 chrX 155270560 + 4187665 4187768 L1PA16 3655 - 237 340 166867 103 chain 14235 chrX 155270560 + 4201535 4201800 L1MB3 1562 - 244 530 143779 50 6 4 63 45 53 9 0 16 35 2 1 55 chain 3327 chrX 155270560 + 4203538 4203578 MLT1C 463 - 359 399 218449 40 chain 7196 chrX 155270560 + 4269135 4269251 MER6C 202 - 84 202 176091 58 14 16 44 chain 17258 chrX 155270560 + 4270293 4270582 Tigger3 1187 - 573 838 134902 15 2 1 15 0 1 4 1 0 4 1 0 14 45 23 188 chain 121584 chrX 155270560 + 4282633 4283982 L1PA4 6152 + 4788 6141 30510 494 0 4 855 chain 25436 chrX 155270560 + 4301953 4302322 THE1B 368 + 0 368 102520 151 4 5 13 1 0 21 4 2 8 1 0 10 0 4 8 9 8 10 1 0 128 chain 14799 chrX 155270560 + 4307339 4307679 L1PB1 5432 - 10 318 141937 18 2 1 12 1 0 21 1 0 24 2 0 13 13 10 15 24 12 16 1 0 43 1 0 16 2 1 42 28 22 10 1 0 8 2 0 24 chain 37386 chrX 155270560 + 4312554 4312975 L1PA6 6164 - 2 423 72977 421 chain 6068 chrX 155270560 + 4341449 4341603 L1MB3 1562 - 66 196 184666 28 1 0 15 61 38 49 chain 51733 chrX 155270560 + 4354038 4354693 PABL_B 668 + 15 668 57800 266 1 0 71 1 0 29 0 1 146 0 1 68 1 0 52 3 2 17 chain 203665 chrX 155270560 + 4370627 4373249 L1PA10 4194 + 382 3018 18949 13 0 1 7 1 0 79 4 2 138 10 11 403 0 9 111 1 0 428 5 6 843 1 2 175 1 2 59 0 4 343 chain 15728 chrX 155270560 + 4400683 4401015 L1PB1 5432 + 5114 5416 139181 20 1 0 12 1 0 12 17 11 51 2 1 14 2 1 44 1 0 16 1 0 6 1 0 9 9 0 11 13 10 14 2 0 24 1 0 21 1 0 6 8 7 12 chain 44136 chrX 155270560 + 4455399 4455976 MER41A 554 + 0 554 64033 86 28 10 173 0 1 197 7 1 86 chain 39473 chrX 155270560 + 4458514 4458955 LTR7Y 441 - 0 441 70055 117 0 1 60 1 0 263 chain 289607 chrX 155270560 + 4460226 4463911 HERVH-int 3825 - 0 3825 14045 107 0 8 110 6 8 143 1 4 6 3 0 101 8 218 39 9 11 339 0 1 1014 10 33 241 0 1 595 0 3 64 1 0 49 91 87 14 10 34 15 1 0 10 1 0 38 127 0 532 chain 3334 chrX 155270560 + 4463073 4463122 HERVH-int 3825 - 3245 3293 218348 9 2 1 38 chain 6180 chrX 155270560 + 4463257 4463328 HERVH-int 3825 - 3293 3364 183745 71 chain 38677 chrX 155270560 + 4463911 4464361 LTR7Y 441 - 0 441 71182 335 17 8 98 chain 18031 chrX 155270560 + 4475395 4475787 L1PB1 5432 + 5068 5427 132774 35 1 2 9 1 0 24 1 0 6 20 15 8 2 0 53 18 16 44 1 0 16 26 12 15 1 4 4 1 0 15 2 0 24 1 0 21 1 0 13 4 0 18 2 0 5 chain 12235 chrX 155270560 + 4530431 4530595 MLT2A2 560 - 395 560 151283 38 14 15 112 chain 79552 chrX 155270560 + 4531512 4532535 MER11A 1151 - 0 1151 43803 60 1 5 102 0 1 16 1 0 46 0 1 58 2 35 288 0 1 92 5 6 107 1 3 36 4 0 66 1 0 52 0 91 85 chain 39595 chrX 155270560 + 4541866 4542535 L1PB1 5432 - 5 655 69894 4 1 0 19 1 0 13 1 0 21 1 0 23 3 1 11 56 40 15 1 0 44 1 0 15 2 1 53 2 0 8 5 1 12 1 0 24 21 19 104 0 13 169 1 3 37 chain 13401 chrX 155270560 + 4544721 4544918 L1PB2 3958 - 120 314 146711 63 1 0 22 2 0 30 0 1 40 6 5 33 chain 12416 chrX 155270560 + 4561032 4561183 THE1D 372 + 224 372 150572 50 3 0 98 chain 21528 chrX 155270560 + 4567827 4568109 AluSg4 309 + 27 309 122053 81 0 1 13 1 0 13 9 6 7 0 3 158 chain 15508 chrX 155270560 + 4576231 4576428 L1PA16 3655 - 67 266 139866 11 3 0 171 0 5 12 chain 26748 chrX 155270560 + 4621320 4621602 AluYa5 310 - 7 289 97172 282 chain 32798 chrX 155270560 + 4624926 4625358 MER57A1 433 - 0 432 79533 139 5 4 44 5 6 239 chain 46276 chrX 155270560 + 4643083 4643891 LTR12D 1347 - 1 909 61791 67 2 0 178 127 69 10 47 0 23 2 1 45 7 6 67 1 2 162 6 214 64 chain 2735 chrX 155270560 + 4643334 4643407 LTR12D 1347 - 147 220 180810 73 chain 3199 chrX 155270560 + 4646456 4646589 MER58A 224 - 41 175 220948 17 82 83 34 chain 42019 chrX 155270560 + 4657720 4658188 L1PA5 6144 - 2 470 66596 468 chain 52526 chrX 155270560 + 4658620 4659278 PABL_A 660 - 0 660 57285 235 0 3 80 1 0 66 2 3 5 1 0 268 chain 26894 chrX 155270560 + 4663069 4663568 L1PB1 5432 + 4847 5277 96647 230 68 9 12 20 16 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 45 9 8 11 1 4 41 chain 39177 chrX 155270560 + 4665214 4665982 L1PB1 5432 - 10 714 70492 18 1 0 11 2 1 22 1 0 14 5 5 5 2 0 14 1 0 4 9 7 12 8 0 9 2 0 4 1 0 16 6 5 37 2 1 55 33 27 11 1 0 6 1 0 24 3 0 5 5 6 131 35 0 77 41 43 134 chain 38524 chrX 155270560 + 4666604 4667169 PRIMA4_LTR 623 - 62 623 71406 109 7 8 32 1 0 5 0 5 10 13 0 32 9 8 89 1 0 5 0 2 28 0 7 33 4 0 96 0 1 58 0 1 7 7 6 19 chain 24680 chrX 155270560 + 4685054 4685351 AluSp 311 - 3 300 106551 297 chain 40821 chrX 155270560 + 4689061 4689698 LTR66 600 - 0 600 68144 127 0 33 26 80 4 31 3 0 7 0 3 35 10 11 171 9 14 138 chain 40995 chrX 155270560 + 4693094 4693637 LTR66 600 - 31 600 67913 80 0 49 26 34 11 403 chain 4344 chrX 155270560 + 4703139 4703207 MER1B 344 + 0 81 202676 12 11 24 45 chain 21986 chrX 155270560 + 4703640 4703894 LTR13A 966 + 0 254 120287 254 chain 43973 chrX 155270560 + 4722214 4722782 MER4E1 777 - 7 777 64232 15 0 2 120 5 203 256 6 7 149 0 1 17 chain 45592 chrX 155270560 + 4723488 4724162 LTR76 689 - 0 682 62415 41 10 11 24 17 18 84 9 4 76 3 2 218 0 1 83 11 10 62 1 3 10 0 6 18 0 4 7 chain 34723 chrX 155270560 + 4740974 4741793 MER4A1 472 - 0 472 76585 223 1 22 80 370 0 130 0 2 15 chain 28593 chrX 155270560 + 4741283 4741648 THE1A 353 + 0 353 90769 109 2 1 150 12 1 92 chain 18794 chrX 155270560 + 4742915 4743173 THE1B 368 + 0 272 130688 44 6 21 101 7 6 100 chain 128191 chrX 155270560 + 4765104 4766590 L1PA6 6164 + 4662 6161 28526 845 0 2 236 0 1 59 0 10 346 chain 16516 chrX 155270560 + 4772995 4773228 MER30 238 + 0 238 136871 100 19 27 65 3 0 46 chain 73535 chrX 155270560 + 4777537 4778455 L1PA8A 6298 + 5378 6291 46771 106 2 0 101 17 16 95 0 2 87 5 1 505 chain 41470 chrX 155270560 + 4809654 4810105 LTR7 482 + 0 482 67323 247 0 31 204 chain 297394 chrX 155270560 + 4810107 4813660 HERVH-int 3825 + 0 3825 13560 181 4 8 23 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 26 1 0 41 3 2 49 0 1 13 0 2 14 0 3 258 2 0 401 0 1 241 8 33 299 0 10 428 0 1 276 0 1 339 9 11 39 4 214 264 0 2 225 chain 40621 chrX 155270560 + 4814923 4815372 LTR7 482 + 0 481 68404 225 0 1 35 0 31 189 chain 3321 chrX 155270560 + 4830072 4830111 MLT1D 503 - 2 41 218552 39 chain 25081 chrX 155270560 + 4830337 4830701 THE1C 375 + 13 375 104400 50 14 16 46 13 10 215 1 0 25 chain 9237 chrX 155270560 + 4840290 4840413 L1PBa1 4058 + 85 209 164370 84 1 0 11 0 2 27 chain 18458 chrX 155270560 + 4865128 4865333 L1PA4 6152 - 0 205 131622 205 chain 43095 chrX 155270560 + 4875588 4876082 L1PA5 6144 + 5634 6128 65296 494 chain 5080 chrX 155270560 + 4880766 4880920 L1PB1 5432 - 5 196 194292 5 2 0 18 1 0 13 54 104 6 10 0 45 chain 3678 chrX 155270560 + 4894095 4894305 L1MDa 1598 - 185 396 212265 42 150 151 18 chain 29248 chrX 155270560 + 4904718 4905022 AluYa5 310 - 6 310 87798 304 chain 5147 chrX 155270560 + 4919706 4919844 MSTB1 431 + 37 176 193576 20 22 24 30 34 33 32 chain 26617 chrX 155270560 + 4923461 4923828 THE1C 375 + 0 374 97610 107 2 3 20 0 3 67 13 16 50 0 1 82 1 0 25 chain 16913 chrX 155270560 + 4924433 4924800 THE1B 368 - 2 368 135817 45 9 3 12 1 0 63 121 124 5 0 3 111 chain 12771 chrX 155270560 + 4980286 4980432 L1PA5 6144 - 12 158 149170 146 chain 27098 chrX 155270560 + 4998341 4998722 MER1A 529 - 86 487 95949 238 6 11 101 21 36 15 chain 33755 chrX 155270560 + 5012214 5012644 MER4A1 472 - 0 472 78012 220 1 22 10 0 4 9 0 17 190 chain 168395 chrX 155270560 + 5025421 5027231 L1PA2 6032 + 4220 6030 22239 1810 chain 10519 chrX 155270560 + 5048566 5048696 MER41A 554 + 102 232 158171 130 chain 63132 chrX 155270560 + 5074439 5075190 MER4E 760 + 0 750 51388 17 2 0 352 0 2 73 1 0 306 chain 36407 chrX 155270560 + 5080961 5081429 LTR2B 499 + 9 499 74362 5 1 0 60 5 2 35 0 19 52 6 13 113 0 1 8 1 0 182 chain 14513 chrX 155270560 + 5145522 5145719 L1PB4 2604 + 2376 2570 142845 9 2 0 167 1 0 18 chain 9892 chrX 155270560 + 5151023 5151147 MER85 139 + 5 139 161112 85 0 10 39 chain 9907 chrX 155270560 + 5159265 5159382 LTR7B 505 + 0 117 161033 117 chain 30219 chrX 155270560 + 5160354 5160805 MER4A1 472 - 0 472 84133 173 5 21 19 32 35 194 3 2 6 0 1 4 0 2 15 chain 33708 chrX 155270560 + 5165217 5165621 LTR2 463 + 0 405 78082 362 12 13 30 chain 20750 chrX 155270560 + 5182523 5182883 THE1B 368 - 0 368 124785 40 25 24 55 49 59 21 2 1 168 chain 16942 chrX 155270560 + 5186517 5186772 Tigger4 2445 + 201 447 135746 21 2 0 13 3 0 8 3 0 41 5 4 159 chain 55977 chrX 155270560 + 5206243 5206957 LTR12_ 688 - 0 688 55136 345 0 1 253 25 0 34 2 0 15 0 1 14 1 0 25 chain 25544 chrX 155270560 + 5211496 5211878 THE1D 372 + 0 371 102029 52 35 26 109 4 0 10 1 3 171 chain 3755 chrX 155270560 + 5232255 5232299 U5 65 - 21 65 211044 44 chain 4357 chrX 155270560 + 5238911 5238957 MER41B 635 + 481 527 202478 46 chain 3088 chrX 155270560 + 5254366 5254413 L1MC3 1789 + 825 865 223131 6 7 0 34 chain 33764 chrX 155270560 + 5267282 5267728 MER4A1 472 - 3 472 77992 221 14 35 188 8 10 15 chain 18555 chrX 155270560 + 5271798 5272169 MER87B 500 - 9 378 131347 24 31 30 115 1 2 9 11 5 14 46 53 26 3 0 91 chain 53385 chrX 155270560 + 5291682 5292353 PABL_B 668 + 0 668 56774 150 2 0 41 8 4 86 1 0 238 0 4 145 chain 50008 chrX 155270560 + 5305589 5306211 PABL_B 668 + 0 668 59011 233 2 45 73 1 0 86 0 3 154 0 1 73 chain 4188 chrX 155270560 + 5311820 5311935 MLT1A 405 + 218 334 204723 17 9 10 36 33 33 20 chain 6344 chrX 155270560 + 5313384 5313519 Tigger2 2703 - 270 423 182439 57 44 0 11 0 62 23 chain 5412 chrX 155270560 + 5354474 5354538 MER41B 635 - 90 154 190876 64 chain 52124 chrX 155270560 + 5363430 5364092 PABL_B 668 + 1 668 57544 229 0 1 144 4 5 57 10 13 78 0 1 97 3 2 40 chain 2702 chrX 155270560 + 5386219 5386248 MER58A 224 - 153 182 230218 29 chain 11921 chrX 155270560 + 5391520 5391654 L1PA7 6471 - 7 141 152507 134 chain 551582 chrX 155270560 + 5398497 5404507 L1PA2 6032 + 2 6027 1243 72 0 1 79 1 0 553 0 7 28 1 0 86 0 4 441 0 5 4749 chain 10258 chrX 155270560 + 5412027 5412157 MLT2B2 565 + 0 130 159333 130 chain 18463 chrX 155270560 + 5412157 5412454 THE1B 368 + 0 300 131603 104 1 0 65 2 0 6 35 43 12 1 0 8 3 2 60 chain 58176 chrX 155270560 + 5417474 5418125 L1PA5 6144 + 5488 6139 53886 651 chain 5055 chrX 155270560 + 5448943 5449036 Tigger3b 1229 + 484 597 194586 13 0 1 44 5 31 17 7 0 7 chain 31116 chrX 155270560 + 5459217 5459622 MER4A1 472 - 43 472 82312 80 1 2 95 9 30 206 1 3 13 chain 6878 chrX 155270560 + 5461526 5461653 MER4C 627 + 0 116 178377 47 8 3 26 18 12 28 chain 18938 chrX 155270560 + 5489633 5489996 THE1B 368 + 0 368 130264 105 18 19 51 69 75 56 8 6 56 chain 43989 chrX 155270560 + 5510612 5511219 MER4A 717 + 114 717 64216 376 14 9 97 21 22 99 chain 10162 chrX 155270560 + 5518502 5518642 MER85 139 + 0 139 159789 101 5 4 34 chain 6326 chrX 155270560 + 5543003 5543195 L1MA8 2339 - 13 167 182580 27 72 42 24 3 1 36 6 0 24 chain 9940 chrX 155270560 + 5551764 5551882 MER4A1 472 + 354 472 160878 118 chain 37699 chrX 155270560 + 5561225 5561751 MLT2A2 560 - 0 560 72556 147 3 14 53 12 36 130 2 0 49 0 1 7 0 2 7 2 0 114 chain 41551 chrX 155270560 + 5565232 5565855 PRIMA4_LTR 623 - 9 614 67221 229 0 1 13 0 2 106 7 8 27 0 7 33 4 0 9 54 15 68 10 6 55 0 18 8 chain 21483 chrX 155270560 + 5584296 5584569 MER41A 554 + 0 270 122207 41 6 2 189 0 1 37 chain 18872 chrX 155270560 + 5589634 5589952 THE1C 375 - 1 367 130450 24 1 0 142 29 36 26 0 1 23 33 74 40 chain 17100 chrX 155270560 + 5601709 5602077 THE1D 372 + 0 362 135316 12 1 3 17 1 0 22 45 37 5 1 0 43 0 1 40 68 69 113 chain 3755 chrX 155270560 + 5605648 5605692 MADE1 96 - 50 94 211048 44 chain 19489 chrX 155270560 + 5613281 5613642 THE1B 368 - 0 368 128690 126 12 10 14 21 28 21 1 0 48 16 16 33 19 25 28 1 0 6 2 0 13 chain 2829 chrX 155270560 + 5616804 5616895 LTR16A1 462 + 277 392 228262 25 48 72 18 chain 132076 chrX 155270560 + 5630034 5631671 L1PA7 6471 - 2029 3902 27603 256 3 5 142 5 0 201 1 19 105 0 1 27 4 3 9 0 225 422 6 9 376 8 1 72 chain 166836 chrX 155270560 + 5631671 5633686 L1PA7 6471 + 4433 6470 22414 235 0 4 69 25 16 56 0 4 51 0 17 626 0 1 107 1 2 12 1 0 5 0 1 326 0 3 168 0 1 333 chain 13298 chrX 155270560 + 5638022 5638183 L1PA5 6144 - 9 171 147088 84 0 1 77 chain 10842 chrX 155270560 + 5647893 5648048 MSTA-int 1630 - 0 154 156823 109 12 11 34 chain 48881 chrX 155270560 + 5656803 5657368 LTR19B 566 + 0 566 59822 452 0 1 113 chain 4727 chrX 155270560 + 5658463 5658518 L1MB3 1562 + 1361 1416 198196 55 chain 27020 chrX 155270560 + 5676006 5676393 MLT2A1 477 + 0 405 96217 98 0 1 25 4 30 14 5 2 11 0 1 13 4 5 193 8 0 12 chain 70388 chrX 155270560 + 5676732 5677604 L1PA7 6471 - 5 855 48219 498 17 0 17 10 3 33 0 1 4 1 0 210 0 2 82 chain 224504 chrX 155270560 + 5682052 5684502 L1PA3long 6157 - 0 2456 17627 843 0 4 1345 0 2 262 chain 217692 chrX 155270560 + 5684503 5735036 L1PA3long 6157 + 2654 6157 18021 517 1 0 517 47280 251 2218 chain 23382 chrX 155270560 + 5700744 5701016 L1PA6 6164 - 2 277 113750 10 0 3 262 chain 13417 chrX 155270560 + 5712339 5712487 L1PA4 6152 - 6 154 146641 148 chain 28906 chrX 155270560 + 5713828 5714266 MER1A 529 - 0 433 89434 54 39 37 295 29 26 21 chain 12062 chrX 155270560 + 5714948 5715252 L1PA15 4387 + 4080 4365 151940 24 1 0 26 6 5 28 75 69 35 6 3 44 3 1 12 6 1 28 1 0 9 chain 28513 chrX 155270560 + 5726393 5726770 THE1C 375 - 0 373 91129 26 1 0 159 1 0 12 0 1 57 10 7 111 chain 15061 chrX 155270560 + 5732099 5732463 L1PB1 5432 + 5114 5430 141135 24 1 0 6 1 0 14 5 1 8 3 1 52 2 1 15 1 0 41 4 3 16 1 0 4 2 0 11 24 0 13 27 22 13 0 8 10 9 0 14 1 0 13 1 0 18 2 0 8 chain 5283 chrX 155270560 + 5732753 5732818 L1MCa 1829 + 1285 1350 186662 65 chain 67425 chrX 155270560 + 5745402 5746173 L1PA5 6144 - 0 771 49475 771 chain 22495 chrX 155270560 + 5781137 5781501 MSTA 426 + 15 423 118047 92 17 41 51 1 3 36 3 1 57 29 49 78 chain 4626 chrX 155270560 + 5787969 5788049 THE1D 372 + 284 359 199343 25 16 11 39 chain 5011 chrX 155270560 + 5790800 5790888 L1MB7 1623 - 454 551 195010 36 15 24 37 chain 42976 chrX 155270560 + 5793666 5794788 L1PB1 5432 + 4628 5423 65442 70 5 7 98 4 7 7 3 0 286 1 2 9 5 0 23 1 0 5 11 2 12 35 29 35 2 1 16 371 71 18 10 7 13 2 0 24 1 0 21 7 6 7 1 0 19 chain 5391 chrX 155270560 + 5830353 5830477 LTR8A 794 + 545 669 191075 60 3 0 5 40 43 16 chain 17370 chrX 155270560 + 5837565 5837780 Charlie3 2679 + 42 257 134598 215 chain 16442 chrX 155270560 + 5841510 5841808 THE1B 368 - 40 368 137091 40 2 1 44 35 45 30 1 0 73 29 51 44 chain 20278 chrX 155270560 + 5842628 5843046 L1PB1 5432 + 5049 5430 126286 16 0 1 37 8 5 6 1 0 21 1 0 12 1 0 11 5 1 9 2 0 52 2 1 10 6 5 44 1 0 16 27 14 17 2 0 4 1 0 15 2 0 24 1 0 17 5 4 13 1 0 14 1 0 5 1 0 7 chain 104007 chrX 155270560 + 5887034 5888217 L1PA4 6152 + 4960 6143 35734 857 0 1 73 0 1 4 1 0 238 1 0 9 chain 11376 chrX 155270560 + 5888260 5888389 L1PA5 6144 + 6014 6144 154794 8 0 1 121 chain 23646 chrX 155270560 + 5918636 5918922 THE1C-int 1605 - 1247 1590 112333 188 0 57 98 chain 7188 chrX 155270560 + 5938357 5938735 L1MA8 2339 + 1998 2324 176155 11 1 0 70 188 154 19 64 47 25 chain 3818 chrX 155270560 + 5969259 5969305 MER44A 345 - 113 159 210124 46 chain 28578 chrX 155270560 + 6000989 6001298 AluYf4 310 - 1 310 90832 309 chain 40713 chrX 155270560 + 6017906 6018411 MER9a3 513 - 0 513 68288 57 0 4 74 19 22 41 0 1 58 1 0 201 0 1 54 chain 9398 chrX 155270560 + 6019363 6019511 L1MA2 4263 + 3913 4058 163563 37 17 15 69 1 0 24 chain 9100 chrX 155270560 + 6024638 6024791 L1MC1 2226 - 217 358 165069 14 2 0 15 3 0 66 1 0 24 9 3 19 chain 3476 chrX 155270560 + 6030455 6030496 L1MC3 1789 + 1334 1375 215709 41 chain 7319 chrX 155270560 + 6046611 6046714 L1PA16 3655 + 3492 3592 175311 85 3 0 15 chain 26026 chrX 155270560 + 6074273 6074579 AluY 311 + 5 303 99910 127 0 1 161 9 0 9 chain 11694 chrX 155270560 + 6074581 6074723 L1PA16 3655 + 3417 3559 153509 142 chain 27656 chrX 155270560 + 6111180 6111474 AluYd8 298 + 0 294 94193 294 chain 26565 chrX 155270560 + 6114319 6114621 AluY 311 + 9 311 97784 302 chain 40372 chrX 155270560 + 6164856 6165306 L1PA4 6152 - 1 453 68775 17 0 1 314 0 1 119 chain 8504 chrX 155270560 + 6186675 6186769 L1PA3long 6157 - 0 94 168271 94 chain 28796 chrX 155270560 + 6190260 6190669 LTR7 482 - 0 482 89909 45 16 18 113 0 1 8 5 36 36 0 1 109 8 46 69 chain 286839 chrX 155270560 + 6191921 6195573 HERVH-int 3825 - 0 3825 14233 225 0 2 149 1 4 6 3 0 72 37 247 39 9 11 236 0 1 536 0 2 155 0 3 126 0 4 232 0 3 56 4 31 215 1 0 13 0 2 24 9 0 130 5 0 75 15 0 447 5 4 64 65 0 14 1 0 11 2 0 30 1 0 4 9 7 14 11 39 12 1 0 10 1 0 24 0 1 6 6 4 514 7 1 20 chain 29547 chrX 155270560 + 6195575 6195984 LTR7 482 - 0 482 86428 49 12 14 113 0 1 8 5 36 36 0 1 109 8 46 69 chain 39927 chrX 155270560 + 6211048 6211592 MLT2A2 560 - 0 560 69429 69 0 1 65 8 19 192 13 18 13 2 0 143 0 1 39 chain 28426 chrX 155270560 + 6226043 6226404 LTR7 482 + 0 482 91481 63 0 89 80 1 32 24 0 1 193 chain 16820 chrX 155270560 + 6226536 6226733 MLT2A2 560 + 0 196 136066 180 1 0 16 chain 27625 chrX 155270560 + 6226736 6227085 MLT2A1 477 + 0 348 94285 168 5 2 9 0 1 132 0 1 35 chain 23984 chrX 155270560 + 6227517 6227792 AluSp 311 - 25 300 110421 275 chain 31307 chrX 155270560 + 6229365 6229825 LTR8 732 - 261 732 81977 184 6 8 103 27 26 108 0 9 16 1 2 15 chain 31434 chrX 155270560 + 6256683 6257113 MER57A1 433 - 0 433 81760 109 22 23 16 3 5 280 chain 80372 chrX 155270560 + 6273266 6274157 MER11D 897 - 6 897 43445 113 0 1 491 1 0 286 chain 4099 chrX 155270560 + 6296665 6296710 MADE1 96 + 50 95 205960 45 chain 43187 chrX 155270560 + 6303275 6303903 MER41B 635 - 0 635 65191 115 14 8 18 39 54 308 7 8 94 3 0 30 chain 14035 chrX 155270560 + 6337950 6338306 THE1B 368 + 0 368 144436 18 2 0 28 0 6 16 53 56 19 93 98 127 chain 32395 chrX 155270560 + 6355415 6355766 L1PA4 6152 - 1 352 80200 351 chain 42977 chrX 155270560 + 6373519 6374068 MLT2A2 560 - 0 560 65438 54 0 1 6 1 0 82 0 11 406 chain 77065 chrX 155270560 + 6396160 6397201 MER11C 1089 + 7 1063 44933 240 7 16 54 0 4 65 1 0 149 33 32 11 1 0 106 7 11 4 1 0 38 0 1 125 0 1 56 1 0 117 0 1 25 chain 5009 chrX 155270560 + 6398327 6398388 MER41D 557 - 9 70 195038 61 chain 116674 chrX 155270560 + 6398400 6399671 L1PA3long 6157 - 0 1271 32233 1271 chain 20223 chrX 155270560 + 6405275 6405539 LTR8 732 - 467 732 126459 68 3 4 57 1 0 120 0 1 15 chain 24964 chrX 155270560 + 6414861 6415187 THE1C 375 + 0 331 104988 130 5 9 127 0 1 64 chain 17778 chrX 155270560 + 6430026 6430356 THE1B 368 - 24 363 133488 23 14 15 63 11 19 10 38 37 54 11 12 106 chain 28866 chrX 155270560 + 6436374 6436692 AluYb8 318 - 0 318 89597 318 chain 9786 chrX 155270560 + 6437775 6438049 L1MC1 2226 - 176 448 161672 4 1 0 9 3 0 45 38 33 24 40 50 21 28 25 61 chain 32182 chrX 155270560 + 6439014 6439395 L1PA7 6471 - 6 388 80558 333 0 1 48 chain 45077 chrX 155270560 + 6445602 6446154 MLT2A2 560 - 0 560 62963 6 0 4 529 0 4 17 chain 21638 chrX 155270560 + 6458440 6458742 THE1B 368 + 0 306 121620 169 1 0 29 0 3 7 7 11 11 1 0 10 1 0 66 chain 42605 chrX 155270560 + 6462426 6463044 L1PA10 4194 - 33 666 65893 11 1 0 28 9 6 23 1 0 6 1 2 75 18 19 34 1 13 59 0 5 36 12 13 303 chain 81231 chrX 155270560 + 6485131 6486028 MER11D 897 - 0 897 43071 897 chain 451719 chrX 155270560 + 6502055 6506926 L1PA2 6032 - 0 4871 8712 4871 chain 25200 chrX 155270560 + 6519615 6519937 THE1B 368 - 23 367 103743 26 5 13 138 1 0 109 0 15 43 chain 29209 chrX 155270560 + 6520817 6521179 THE1C 375 + 0 364 88004 204 0 2 158 chain 21768 chrX 155270560 + 6536405 6536756 THE1B 368 - 4 367 121144 33 33 32 59 5 13 13 0 1 4 1 0 4 0 5 31 1 0 92 1 2 74 chain 36506 chrX 155270560 + 6545391 6545897 MER1A 529 + 1 529 74232 34 12 33 376 28 29 56 chain 11164 chrX 155270560 + 6546226 6546494 THE1B 368 - 0 277 155573 37 23 24 67 2 1 9 41 50 11 1 0 32 19 17 6 0 3 20 chain 4594 chrX 155270560 + 6555864 6555932 L1MB3 1562 - 39 112 199703 10 0 6 39 1 0 18 chain 40318 chrX 155270560 + 6556383 6556846 L1PA4 6152 + 5680 6143 68857 463 chain 33358 chrX 155270560 + 6559920 6560378 MER4A1 472 + 0 472 78638 30 1 0 140 8 1 59 6 7 10 7 28 197 chain 18299 chrX 155270560 + 6568662 6568909 L1PA16 3655 + 3313 3563 132080 98 16 19 133 chain 83242 chrX 155270560 + 6582163 6583234 MER11B 1079 - 5 1073 42237 19 9 10 263 8 0 8 1 4 175 36 35 246 0 4 38 11 8 215 1 2 41 chain 24290 chrX 155270560 + 6590782 6591146 THE1B 368 + 0 368 108706 140 0 3 26 1 0 32 33 42 70 7 0 55 chain 33907 chrX 155270560 + 6594792 6595244 MLT2A2 560 + 0 560 77763 183 1 0 112 0 98 13 9 20 134 chain 129296 chrX 155270560 + 6607606 6609112 LTR12C 1709 - 0 1709 28244 52 0 1 428 0 4 107 2 0 6 1 0 74 0 200 400 0 1 436 chain 12178 chrX 155270560 + 6613935 6614085 LTR8 732 + 572 722 151501 150 chain 31670 chrX 155270560 + 6625326 6625806 MER1A 529 - 8 488 81376 55 29 23 74 21 27 166 6 6 129 chain 7368 chrX 155270560 + 6643539 6643655 L1PB4 2604 - 117 303 174991 22 9 79 85 chain 34129 chrX 155270560 + 6647148 6647596 MER4A1 472 + 0 472 77438 4 0 1 9 0 2 203 12 33 220 chain 35023 chrX 155270560 + 6647624 6648144 LTR10D 510 + 0 510 76156 72 19 7 14 0 1 52 0 1 38 13 13 31 2 0 5 1 0 4 1 5 176 5 4 87 chain 70678 chrX 155270560 + 6671074 6672152 L1PB1 5432 - 46 1088 48075 16 1 0 14 78 60 12 8 7 40 1 0 16 2 3 50 2 0 10 26 20 24 1 0 5 7 6 116 5 4 353 4 0 84 2 1 201 chain 39355 chrX 155270560 + 6701023 6701532 MER41C 542 + 13 523 70245 36 0 1 125 1 2 175 2 1 170 chain 25170 chrX 155270560 + 6738056 6738370 THE1A 353 - 42 353 103907 195 2 0 6 1 0 110 chain 63568 chrX 155270560 + 6738375 6739123 THE1A-int 1579 - 5 752 51208 67 1 0 680 chain 57681 chrX 155270560 + 6748876 6749611 LTR8 732 - 0 732 54145 41 1 0 42 2 0 649 chain 23858 chrX 155270560 + 6758037 6758399 THE1B 368 + 0 368 111138 105 11 13 51 38 31 10 0 4 18 0 8 68 1 0 60 chain 22135 chrX 155270560 + 6764195 6764473 AluY 311 + 36 305 119645 14 4 0 147 5 0 108 chain 4763 chrX 155270560 + 6781281 6781372 MER33 330 - 179 269 197778 23 18 17 50 chain 26102 chrX 155270560 + 6788322 6788675 THE1B 368 + 2 368 99611 42 1 16 116 1 0 22 3 0 101 0 2 67 chain 14384 chrX 155270560 + 6798170 6798443 L1PB1 5432 - 10 264 143258 18 1 0 4 5 8 22 1 0 24 2 0 14 9 6 18 27 15 13 1 0 44 1 0 15 2 1 52 chain 552077 chrX 155270560 + 6850522 6856682 L1PA2 6032 + 0 6032 1183 74 0 1 639 15 1 52 138 11 180 0 3 3265 0 4 1782 1 6 14 chain 25228 chrX 155270560 + 6862084 6862446 THE1D 372 + 4 372 103599 11 0 2 148 24 29 139 8 7 32 chain 48405 chrX 155270560 + 6876001 6876587 LTR10C 591 - 0 591 60178 81 7 9 29 0 3 469 chain 344954 chrX 155270560 + 6890573 6894686 L1P3 4156 - 17 4141 11755 23 1 0 9 2 0 1039 0 3 239 0 2 191 0 1 233 12 3 45 1 3 573 0 1 381 0 3 503 0 10 163 6 0 6 11 21 286 1 0 72 10 9 69 1 0 236 chain 46132 chrX 155270560 + 6903142 6903751 PABL_A 660 - 52 660 61913 144 1 0 181 4 5 10 1 0 46 0 1 32 15 14 175 chain 44178 chrX 155270560 + 6903828 6904386 MER41A 554 + 0 554 63974 404 15 11 139 chain 55755 chrX 155270560 + 6906354 6907023 PABL_B 668 - 0 668 55269 85 2 0 352 0 1 230 chain 9784 chrX 155270560 + 6927777 6927883 L1PA5 6144 + 6034 6140 161682 106 chain 14545 chrX 155270560 + 6933917 6934137 MER39B 650 - 382 604 142739 143 11 13 40 2 0 7 1 3 16 chain 45691 chrX 155270560 + 6935803 6936348 MER41A 554 + 0 552 62323 377 0 1 90 0 5 25 1 2 52 chain 40088 chrX 155270560 + 6936782 6937320 MER41C 542 + 0 542 69201 49 0 1 173 0 1 89 2 0 6 7 10 26 8 7 116 0 2 62 chain 4989 chrX 155270560 + 6947300 6947361 MLT1B 390 - 291 352 195257 61 chain 42509 chrX 155270560 + 6948821 6949365 MER41A 554 - 0 554 66002 52 3 4 25 0 5 90 0 1 183 1 0 4 12 16 174 chain 3156 chrX 155270560 + 6966929 6967105 LTR37A 408 - 22 197 221825 30 120 120 13 1 0 12 chain 28482 chrX 155270560 + 6985784 6986153 THE1B 368 + 0 368 91256 168 12 11 189 chain 6972 chrX 155270560 + 7032512 7032610 MSTC 436 - 310 407 177670 33 0 1 9 9 7 47 chain 3148 chrX 155270560 + 7042635 7042672 MLT1D 503 + 457 494 221964 37 chain 22690 chrX 155270560 + 7043657 7044004 THE1B 368 - 12 368 117124 44 7 6 62 38 49 21 6 5 169 chain 40487 chrX 155270560 + 7115366 7115882 MER41C 542 - 0 528 68610 88 0 10 128 1 2 264 0 1 35 chain 59996 chrX 155270560 + 7127719 7128419 L1PA8A 6298 - 7 710 52828 38 0 1 66 0 1 220 0 1 376 chain 29467 chrX 155270560 + 7132608 7133354 L1PB1 5432 - 10 480 86769 18 1 0 13 1 0 21 1 0 23 5 1 15 7 4 10 23 15 6 3 0 16 1 0 44 1 0 15 2 1 53 2 0 8 5 1 12 1 0 12 1 0 20 1 0 11 243 0 151 chain 4936 chrX 155270560 + 7149027 7149084 L1MB5 1630 + 1098 1155 195863 57 chain 3394 chrX 155270560 + 7166781 7166884 L1MB3 1562 - 10 123 217193 17 0 11 10 47 46 29 chain 41868 chrX 155270560 + 7233465 7234016 MLT2A2 560 - 0 560 66807 70 0 1 64 8 19 35 7 4 367 chain 52606 chrX 155270560 + 7263175 7263832 PABL_A 660 - 0 660 57235 123 7 6 20 0 2 318 0 1 116 1 2 72 chain 28051 chrX 155270560 + 7274356 7274730 THE1C 375 - 0 375 92824 26 1 0 166 1 0 37 0 4 33 2 1 108 chain 39266 chrX 155270560 + 7274738 7275222 THE1C-int 1605 - 8 501 70376 49 0 1 5 1 0 7 0 11 143 2 0 277 chain 27499 chrX 155270560 + 7283474 7283844 THE1B 368 + 10 368 94654 162 2 1 19 4 0 55 11 4 117 chain 122217 chrX 155270560 + 7283845 7285417 THE1B-int 1605 + 1 1605 30305 422 3 28 318 1 0 6 10 11 354 0 4 248 7 8 78 0 1 108 0 1 17 chain 26806 chrX 155270560 + 7285419 7285779 THE1B 368 + 2 368 96954 170 2 1 9 12 10 118 0 10 8 1 0 40 chain 18256 chrX 155270560 + 7298825 7299033 L1PA5 6144 + 5936 6144 132183 208 chain 10726 chrX 155270560 + 7319566 7319798 L1PA15 4387 + 4093 4314 157299 11 1 0 26 4 3 51 8 7 17 14 9 28 31 28 41 chain 77876 chrX 155270560 + 7369544 7370438 L1PA4 6152 - 0 898 44576 10 0 6 107 1 0 137 1 0 638 chain 73318 chrX 155270560 + 7370438 7371248 L1PA4 6152 + 4450 5259 46692 216 1 0 593 chain 26515 chrX 155270560 + 7396132 7396489 THE1C 375 - 13 375 97990 148 5 6 4 1 0 17 1 2 46 5 9 130 chain 84817 chrX 155270560 + 7427076 7428014 L1PA3long 6157 - 10 946 41584 137 1 0 620 1 0 179 chain 70115 chrX 155270560 + 7428014 7428776 L1PA3long 6157 + 4461 5223 48265 762 chain 425828 chrX 155270560 + 7442373 7447636 L1PA6 6164 + 1209 6156 9400 87 1 2 514 1 0 520 2 3 970 0 1 1185 0 1 4 0 1 152 1 0 755 1 0 380 318 0 372 chain 98245 chrX 155270560 + 7459018 7460449 L1PB1 5432 - 8 1431 37226 4 1 0 16 1 0 13 1 0 21 2 1 23 2 0 14 12 9 14 20 9 4 1 0 16 1 0 43 1 0 15 3 2 53 2 0 9 16 11 13 10 9 11 37 20 35 2 45 38 0 1 174 1 0 128 0 1 51 3 0 393 8 9 4 1 0 214 chain 8377 chrX 155270560 + 7465114 7465231 LOR1b 457 + 41 157 168982 91 5 4 21 chain 5861 chrX 155270560 + 7468606 7468826 AluJo 314 - 49 132 186574 72 137 0 11 chain 11318 chrX 155270560 + 7468932 7469056 L1PA5 6144 - 1 125 155003 124 chain 104632 chrX 155270560 + 7473792 7475011 L1PA4 6152 - 0 1229 35584 773 10 12 232 0 8 204 chain 560209 chrX 155270560 + 7505635 7511793 L1PA3long 6157 - 0 6155 341 5 0 2 4 1 0 140 1 0 4815 0 3 306 1 2 165 8 1 712 chain 4635 chrX 155270560 + 7523662 7523727 MER31A 484 + 419 484 199251 50 2 0 5 0 2 8 chain 34559 chrX 155270560 + 7524842 7525309 MLT2A1 477 + 7 477 76815 135 0 1 26 1 5 28 0 1 53 0 1 126 0 2 11 8 0 7 1 0 6 3 0 10 6 12 46 chain 167916 chrX 155270560 + 7526041 7528376 SVA_D 2077 - 0 2071 22292 7 2 0 633 0 49 166 127 0 184 0 2 88 299 5 26 3 1 13 2 0 130 0 77 565 0 27 44 0 2 22 1 7 23 chain 2831 chrX 155270560 + 7526849 7526891 SVA_D 2077 - 982 1024 139049 42 chain 1652 chrX 155270560 + 7526942 7526976 SVA_D 2077 - 694 728 87334 34 chain 17623 chrX 155270560 + 7527248 7527452 SVA_D 2077 - 775 979 71750 204 chain 5777 chrX 155270560 + 7527487 7527547 SVA_D 2077 - 535 595 155561 60 chain 2911 chrX 155270560 + 7531829 7531860 L1MA8 2339 + 2165 2196 226848 31 chain 5973 chrX 155270560 + 7555775 7555998 L1MC1 2226 - 28 233 185482 15 1 0 28 5 4 16 49 38 14 54 49 41 chain 8025 chrX 155270560 + 7603671 7603836 L1PA14 3548 + 3277 3436 170909 55 16 11 25 11 0 11 10 21 14 1 0 22 chain 16114 chrX 155270560 + 7607781 7608033 L1PB4 2604 - 428 683 138014 54 36 37 108 0 2 54 chain 6790 chrX 155270560 + 7616918 7617030 L1MC1 2226 - 179 288 179023 51 8 6 10 1 0 42 chain 28711 chrX 155270560 + 7617209 7617533 LTR17 781 - 457 781 90287 324 chain 77380 chrX 155270560 + 7619169 7620046 HERV17-int 4347 - 2116 2993 44790 85 0 1 678 2 1 112 chain 43666 chrX 155270560 + 7621582 7622109 LTR17 781 - 0 526 64607 454 1 0 72 chain 22737 chrX 155270560 + 7679637 7679970 THE1C 375 - 40 375 116886 17 0 4 70 0 1 45 22 19 65 6 7 5 1 0 102 chain 43272 chrX 155270560 + 7682250 7682789 MER4E1 777 + 0 542 65089 18 1 3 273 0 1 247 chain 18253 chrX 155270560 + 7682848 7683065 MER4E1 777 - 0 230 132194 193 0 13 24 chain 68068 chrX 155270560 + 7692721 7693478 L1PA4 6152 + 5401 6151 49213 596 7 0 154 chain 74057 chrX 155270560 + 7723575 7724392 L1PA3long 6157 - 0 815 46481 5 2 0 810 chain 40040 chrX 155270560 + 7724392 7724836 L1PA3long 6157 + 4913 5356 69139 197 1 0 246 chain 21032 chrX 155270560 + 7729722 7730107 THE1C 375 - 0 375 123804 153 0 1 8 117 106 107 chain 9129 chrX 155270560 + 7752590 7752693 L1P2 5180 + 1842 1945 164913 103 chain 7363 chrX 155270560 + 7752731 7752959 L1MB3 1562 + 1351 1552 175014 58 58 30 26 1 0 12 47 46 9 0 3 17 chain 4256 chrX 155270560 + 7757850 7757899 MER77 626 - 563 612 203793 49 chain 9130 chrX 155270560 + 7758607 7758787 MER50 708 - 25 189 164906 43 5 6 14 17 18 61 18 0 22 chain 22451 chrX 155270560 + 7765943 7766276 THE1B 368 + 0 353 118245 169 1 0 28 0 3 10 0 4 18 1 0 7 5 4 45 18 34 31 chain 17658 chrX 155270560 + 7767367 7767552 AluYb8 318 + 133 318 133817 185 chain 19509 chrX 155270560 + 7775256 7775613 THE1B 368 + 0 368 128630 19 2 0 28 0 6 4 0 1 4 1 0 42 11 10 50 72 80 124 chain 19927 chrX 155270560 + 7788665 7789023 THE1B 368 - 0 368 127368 56 7 6 20 0 2 31 21 29 10 0 1 4 36 34 6 1 0 13 0 1 38 7 9 108 chain 27726 chrX 155270560 + 7806601 7807967 THE1A 353 - 0 353 93947 193 1012 0 49 1 0 111 chain 8592 chrX 155270560 + 7806837 7806956 THE1A 353 - 234 353 167777 6 0 2 15 1 0 48 0 1 34 2 0 13 chain 13677 chrX 155270560 + 7807614 7807795 THE1A 353 - 0 181 145681 151 1 0 9 0 1 20 chain 74535 chrX 155270560 + 7807967 7808895 THE1A-int 1579 - 0 938 46244 22 1 8 36 0 1 4 1 0 369 0 3 265 11 12 199 6 5 14 chain 37101 chrX 155270560 + 7818378 7818914 MLT2A2 560 + 0 560 73383 15 0 4 172 15 18 34 14 19 86 4 0 51 3 14 91 0 1 42 0 4 9 chain 6384 chrX 155270560 + 7819678 7819774 THE1A-int 1579 - 1484 1579 182156 50 11 10 35 chain 29662 chrX 155270560 + 7819776 7820128 THE1A 353 - 2 353 86019 241 1 0 110 chain 13357 chrX 155270560 + 7858176 7858406 AluYb8 318 + 11 318 146856 52 69 146 109 chain 34843 chrX 155270560 + 7859912 7860357 LTR46 455 - 0 455 76415 37 4 0 114 1 0 5 0 17 93 3 1 188 chain 22723 chrX 155270560 + 7867874 7868235 THE1B 368 + 0 368 116970 44 4 0 125 1 0 23 53 63 45 0 2 66 chain 81833 chrX 155270560 + 7913609 7914778 L1MA1 4479 - 331 1467 42828 6 1 0 35 2 0 29 1 0 88 1 2 36 3 0 8 1 0 11 12 11 63 1 0 19 8 6 8 1 0 73 1 0 14 2 0 24 1 0 196 2 0 130 3 0 126 5 0 11 3 2 72 4 0 19 2 0 147 chain 45022 chrX 155270560 + 7925266 7925777 MER9a1 513 - 0 513 63032 147 0 4 195 2 0 167 chain 167228 chrX 155270560 + 7934152 7936010 L1PA5 6144 - 12 1872 22364 838 1 0 117 1 0 826 0 4 75 chain 55406 chrX 155270560 + 7936010 7936625 L1P1 4361 + 2480 3095 55324 615 chain 20454 chrX 155270560 + 7937085 7937398 THE1B 368 - 0 368 125744 60 0 31 34 35 45 30 1 0 103 6 21 44 chain 29895 chrX 155270560 + 7942903 7943283 MLT2A1 477 + 0 385 85117 142 0 1 20 6 10 212 chain 345166 chrX 155270560 + 7943351 7947514 HERVL-int 5654 + 437 5654 11753 155 6 5 52 1 0 63 1 0 153 1 6 110 2 1 127 1 2 7 1 0 53 0 1033 60 0 1 52 5 3 273 0 10 155 1 2 384 0 1 737 1 0 82 0 4 678 0 2 108 0 6 11 6 0 161 0 3 449 2 0 38 0 1 9 0 2 218 chain 24842 chrX 155270560 + 7947514 7947851 MLT2A1 477 + 0 342 105670 117 1 0 4 9 10 11 0 1 20 6 10 169 chain 25304 chrX 155270560 + 7954698 7954976 L1PA3long 6157 - 0 278 103208 278 chain 3425 chrX 155270560 + 7954976 7955013 tRNA-Ile-ATA 38 + 1 38 216671 37 chain 104436 chrX 155270560 + 7970351 7971824 LTR12C 1709 - 0 1709 35630 86 11 10 141 24 1 243 20 13 8 24 0 89 4 51 230 1 119 11 0 28 183 1 38 76 0 5 96 0 4 107 54 106 64 chain 22719 chrX 155270560 + 7993012 7993372 THE1B 368 - 0 368 116991 117 19 27 10 12 16 18 7 5 144 1 0 7 1 0 24 chain 22152 chrX 155270560 + 8000350 8000614 AluSg7 307 + 0 266 119583 10 0 3 119 1 0 134 chain 37175 chrX 155270560 + 8030371 8030883 MER1A 529 + 0 529 73275 16 11 25 227 0 3 185 3 0 5 8 11 57 chain 18536 chrX 155270560 + 8054475 8054863 THE1D 372 - 0 372 131404 31 2 1 115 12 9 22 1 0 5 26 27 30 8 12 15 34 36 12 19 1 56 chain 2985 chrX 155270560 + 8074245 8074293 MER34C_ 573 + 480 518 225345 30 10 0 8 chain 28723 chrX 155270560 + 8076208 8076578 THE1B 368 - 0 368 90231 102 0 1 63 2 0 29 2 1 172 chain 84813 chrX 155270560 + 8089456 8090741 LTR12C 1709 + 0 1709 41587 24 0 9 244 18 19 42 3 46 82 10 0 7 96 42 94 7 8 33 0 278 143 0 47 88 24 22 168 0 102 129 1 0 4 7 17 61 chain 27691 chrX 155270560 + 8102125 8102584 MLT2A1 477 - 0 477 94075 51 26 55 27 54 46 128 4 1 169 chain 35310 chrX 155270560 + 8105240 8105666 HERVL-int 5654 - 5226 5654 75783 61 8 10 357 chain 28594 chrX 155270560 + 8105728 8106131 MLT2A1 477 - 92 477 90768 84 0 1 103 26 9 18 4 1 27 1 2 140 chain 86142 chrX 155270560 + 8112342 8113512 LTR12C 1709 - 0 1709 41101 84 4 3 64 1 0 330 11 4 83 1 485 143 13 12 34 1 0 88 13 56 40 43 66 217 chain 3898 chrX 155270560 + 8121778 8121825 Tigger3b 1229 - 1129 1176 208890 47 chain 81393 chrX 155270560 + 8121827 8122722 MER11D 897 + 0 897 43014 856 0 2 39 chain 42383 chrX 155270560 + 8126883 8127644 L1PB1 5432 - 12 719 66177 16 1 0 13 1 0 21 1 0 24 1 0 9 13 10 28 33 21 42 1 0 15 2 1 47 6 4 10 7 3 9 1 0 13 1 0 16 29 15 226 1 2 60 9 11 35 15 2 50 1 0 4 chain 2030 chrX 155270560 + 8128002 8128026 L1PB1 5432 - 62 86 238350 24 chain 2131 chrX 155270560 + 8128028 8128065 L1PB1 5432 - 86 120 237365 15 1 0 4 2 0 15 chain 27507 chrX 155270560 + 8128085 8128504 L1PB1 5432 - 130 535 94632 6 1 0 16 4 3 41 1 0 14 3 2 47 6 4 10 7 3 9 1 0 13 1 0 19 5 0 8 1 4 206 chain 15875 chrX 155270560 + 8143762 8143957 THE1A 353 + 0 194 138723 111 1 0 83 chain 16070 chrX 155270560 + 8180670 8180837 AluYa5 310 + 137 304 138147 167 chain 37461 chrX 155270560 + 8181328 8181801 LTR2 463 + 0 463 72875 57 2 1 181 6 0 22 2 0 119 0 1 30 1 0 28 1 0 24 chain 17373 chrX 155270560 + 8194598 8194937 L1PB1 5432 - 5 314 134589 5 2 0 18 1 0 12 1 0 22 1 0 24 2 0 15 1 0 6 2 0 28 16 3 14 1 0 44 2 5 10 2 1 53 2 0 8 5 1 12 1 0 8 1 0 20 chain 3995 chrX 155270560 + 8199939 8199984 MADE1 96 - 3 48 207453 45 chain 33787 chrX 155270560 + 8209830 8210281 MLT2A2 560 - 0 560 77959 87 0 1 59 4 113 117 1 0 183 chain 8876 chrX 155270560 + 8222992 8223172 L1PB1 5432 - 9 167 166254 5 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 9 6 17 9 0 9 2 0 4 1 0 16 1 0 15 chain 46871 chrX 155270560 + 8236749 8237264 L1P1 4361 - 1071 1586 61333 515 chain 101083 chrX 155270560 + 8239007 8240138 L1PA5 6144 + 5017 6143 36493 166 3 0 949 3 1 10 chain 174810 chrX 155270560 + 8259718 8262130 L1PBa 3878 + 1386 3727 21489 29 8 10 7 0 4 169 11 12 5 2 0 932 80 5 144 0 5 7 2 9 55 3 5 16 19 0 232 0 1 7 8 8 121 4 0 51 3 0 197 11 17 90 0 1 4 0 3 149 0 1 33 2 1 11 chain 15587 chrX 155270560 + 8276350 8276712 THE1B 368 - 0 368 139623 49 14 13 64 10 18 10 3 7 7 1 0 7 23 16 35 64 67 75 chain 22618 chrX 155270560 + 8279059 8279401 THE1B 368 + 14 368 117496 161 1 0 16 3 1 6 0 3 9 0 4 13 0 10 6 2 1 62 19 18 44 chain 3272 chrX 155270560 + 8289834 8289894 L1MA6 2487 + 2149 2210 219551 25 12 13 23 chain 10409 chrX 155270560 + 8290925 8291053 Tigger2a 444 - 232 364 158647 41 0 1 43 0 3 44 chain 24465 chrX 155270560 + 8324121 8324538 LTR7 482 - 15 482 107732 100 1 2 60 0 1 6 4 35 40 1 12 28 44 0 32 0 50 68 9 4 7 1 0 4 0 6 12 chain 3185 chrX 155270560 + 8333845 8334009 L1MB7 1623 - 205 365 221206 39 88 89 5 1 0 17 2 0 3 2 0 7 chain 50378 chrX 155270560 + 8341209 8341810 LTR14B 630 + 10 613 58727 305 1 4 233 1 0 61 chain 53591 chrX 155270560 + 8369264 8369866 L1PA4 6152 + 5542 6143 56616 361 1 0 240 chain 3435 chrX 155270560 + 8371268 8371306 MER58A 224 + 45 83 216491 38 chain 28881 chrX 155270560 + 8375389 8375699 AluYa5 310 - 0 310 89536 183 0 1 33 1 0 93 chain 17057 chrX 155270560 + 8378563 8378874 THE1D 372 - 64 372 135441 84 1 0 32 24 26 28 1 5 31 32 33 17 9 0 52 chain 21613 chrX 155270560 + 8384442 8384790 THE1B 368 + 8 368 121717 56 15 18 87 1 0 21 51 61 117 chain 12579 chrX 155270560 + 8406751 8407063 MSTA 426 - 21 367 149920 66 25 46 30 59 50 5 2 0 60 27 51 38 chain 109411 chrX 155270560 + 8419801 8421096 LTR12C 1709 - 0 1709 34341 168 0 102 111 8 0 100 0 4 107 2 0 6 1 319 792 chain 27860 chrX 155270560 + 8426003 8426342 THE1A 353 - 12 353 93491 231 1 0 39 0 3 68 chain 124223 chrX 155270560 + 8426342 8427898 THE1A-int 1579 - 0 1579 29613 25 0 7 12 0 1 530 0 1 5 0 13 834 5 6 145 chain 25991 chrX 155270560 + 8427898 8428252 THE1A 353 - 0 353 100048 134 1 0 78 1 0 21 12 11 44 2 4 61 chain 24057 chrX 155270560 + 8462223 8462597 THE1D 372 - 0 372 110002 35 4 5 107 1 0 25 32 34 34 0 4 49 4 5 19 9 0 55 chain 12178 chrX 155270560 + 8462597 8462866 MER44D 709 + 442 709 151505 33 35 41 87 1 0 5 22 16 57 17 16 12 chain 62190 chrX 155270560 + 8470248 8470951 SVA_A 1864 + 1161 1864 51811 7 3 0 92 1 4 600 chain 10194 chrX 155270560 + 8474690 8474864 MER4B 649 - 16 170 159656 71 1 0 36 37 18 29 chain 82098 chrX 155270560 + 8481265 8482318 MER11C 1089 + 0 1063 42724 250 0 1 66 0 4 65 1 0 146 45 47 12 6 4 95 0 4 5 1 0 38 0 1 38 0 1 88 0 1 197 chain 18335 chrX 155270560 + 8518890 8519192 THE1B 368 + 0 306 131973 169 56 61 12 2 1 63 chain 311557 chrX 155270560 + 8522650 8526352 L1PA7 6471 + 2683 6449 12943 73 2 6 1015 0 36 343 3 17 94 1 0 220 0 1 180 0 4 523 7 11 319 0 1 47 3 0 18 0 1 4 6 7 18 1 0 376 0 1 103 0 2 29 1 2 5 1 0 168 1 2 102 1 0 38 chain 28477 chrX 155270560 + 8549140 8549493 THE1A 353 + 0 353 91278 109 2 1 183 0 2 6 2 1 51 chain 38821 chrX 155270560 + 8563801 8564324 MER1A 529 + 1 529 70989 147 1 6 59 8 10 233 2 0 5 1 0 4 3 4 60 chain 24206 chrX 155270560 + 8576680 8577025 THE1C 375 + 14 360 109179 75 0 1 96 7 8 31 4 9 9 6 0 117 chain 15707 chrX 155270560 + 8578083 8578305 HSMAR2 1300 + 1076 1296 139243 35 15 13 172 chain 50069 chrX 155270560 + 8611432 8612189 MER4E1 777 + 0 777 58967 19 12 13 157 1 0 11 0 1 28 25 26 47 0 32 17 2 1 134 19 17 25 34 23 226 chain 21035 chrX 155270560 + 8631472 8631828 LTR45C 530 + 0 372 123790 180 2 1 28 68 76 62 0 9 16 chain 18163 chrX 155270560 + 8636098 8636446 L1PB1 5432 - 12 329 132427 16 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 28 20 9 10 4 3 41 1 0 15 2 1 45 8 6 10 2 0 3 2 0 9 1 0 13 1 0 20 1 0 11 chain 16081 chrX 155270560 + 8642534 8642756 MER30 238 - 0 238 138112 39 3 0 70 4 23 106 chain 6503 chrX 155270560 + 8647731 8647808 L1MB2 1706 + 1611 1688 181212 77 chain 84021 chrX 155270560 + 8676339 8677318 L1PA7 6471 + 5495 6470 41897 126 2 0 39 0 1 48 0 1 650 4 0 110 chain 8756 chrX 155270560 + 8680059 8680464 MLT1C 463 - 4 431 166882 36 18 19 38 81 99 5 1 0 13 70 87 28 53 48 14 8 0 40 chain 39905 chrX 155270560 + 8690266 8690969 L1PB1 5432 - 10 680 69450 18 1 0 10 4 3 21 1 0 24 2 0 15 1 0 4 3 1 29 14 1 16 1 0 44 1 0 15 2 1 53 2 0 8 18 13 12 68 31 65 1 24 17 1 0 102 0 13 130 chain 45870 chrX 155270560 + 8690970 8691538 L1PB1 5432 + 4186 4749 62154 111 1 2 324 1 0 6 4 0 84 1 0 36 chain 25723 chrX 155270560 + 8709099 8709402 AluSp 311 - 9 311 101201 176 2 1 125 chain 31176 chrX 155270560 + 8714232 8714682 L1PB1 5432 + 4831 5277 82208 238 0 6 28 1 2 9 1 0 24 1 0 9 18 13 7 2 0 53 2 1 16 1 0 40 chain 44404 chrX 155270560 + 8734539 8735054 MER9a1 513 - 0 513 63688 68 2 0 445 chain 5136 chrX 155270560 + 8739043 8739107 L1PA2 6032 - 0 62 193717 7 2 0 55 chain 19082 chrX 155270560 + 8739150 8739444 HUERS-P3b-int 2065 - 1759 2050 129875 7 4 0 123 24 27 27 0 1 27 3 0 79 chain 445230 chrX 155270560 + 8741435 8747055 L1PA8 5853 + 121 5853 8897 9 0 15 160 0 4 836 1 0 10 1 5 261 1 0 15 21 21 86 0 1 114 16 12 348 4 0 347 3 2 260 5 6 237 2 1 35 0 1 100 0 1 362 1 0 680 0 8 236 1 2 4 1 0 442 0 1 185 0 93 97 10 6 175 0 6 259 1 0 46 2 0 69 1 0 14 1 0 13 0 1 33 2 1 19 1 0 93 chain 19028 chrX 155270560 + 8750187 8750548 LTR7 482 - 40 472 130037 136 23 24 21 5 37 35 6 57 17 15 14 15 29 17 59 chain 29025 chrX 155270560 + 8752591 8753185 L1PB1 5432 + 4929 5412 88880 49 10 0 116 76 11 12 22 17 13 1 0 10 5 1 11 3 1 50 3 1 15 1 0 44 1 0 16 4 0 11 10 1 15 10 8 15 2 0 24 1 0 21 1 0 13 1 0 8 chain 5115 chrX 155270560 + 8780637 8780720 MER53 195 - 101 182 193914 45 12 10 26 chain 23131 chrX 155270560 + 8814803 8815088 AluSp 311 + 19 298 114991 113 1 0 156 5 0 10 chain 4437 chrX 155270560 + 8817748 8817804 LTR24C 604 + 548 604 201499 56 chain 21086 chrX 155270560 + 8827051 8827328 AluSq2 311 - 23 300 123591 134 0 3 6 9 6 128 chain 19597 chrX 155270560 + 8846121 8846382 L1PB2 3958 - 121 376 128392 62 1 0 22 2 0 67 6 5 64 1 0 6 1 0 29 chain 18904 chrX 155270560 + 8863409 8863652 L1PA8A 6298 + 6047 6291 130353 142 1 2 51 8 8 41 chain 29511 chrX 155270560 + 8888354 8888860 MLT2A1 477 + 19 477 86601 98 1 0 4 0 1 16 0 1 31 4 1 51 1 0 10 5 13 124 0 1 8 4 6 10 1 0 11 72 17 55 chain 3717 chrX 155270560 + 8889692 8889733 MER58A 224 + 50 91 211681 41 chain 13130 chrX 155270560 + 8896854 8897243 L1PB1 5432 - 10 370 147722 18 1 0 13 2 1 20 1 0 23 62 47 4 1 0 15 9 8 14 7 12 11 18 16 44 10 8 9 2 0 3 2 0 10 1 0 8 1 0 24 3 0 6 6 5 41 chain 5813 chrX 155270560 + 8897244 8897310 L1PB1 5432 + 4945 5011 187010 66 chain 5159 chrX 155270560 + 8897353 8897417 L1P5 443 + 336 400 193454 64 chain 330878 chrX 155270560 + 8900205 8904142 L1PA7 6471 - 3 3954 12170 10 4 0 256 0 1 286 0 1 204 1 0 70 0 1 184 2 1 927 0 4 153 0 2 4 1 0 970 0 2 288 0 4 33 0 2 165 0 1 49 0 3 175 1 0 32 1 2 121 chain 134904 chrX 155270560 + 8904144 8905892 L1P3 4156 - 2400 4156 27030 340 1 4 54 14 0 77 13 32 101 8 10 729 0 1 85 8 7 53 22 21 45 12 11 186 chain 19199 chrX 155270560 + 8935791 8936094 THE1D 372 - 78 372 129531 70 6 7 24 1 0 10 13 17 91 13 0 75 chain 25617 chrX 155270560 + 8936094 8936557 L1PA15 4387 + 3925 4366 101637 7 1 0 81 0 3 36 7 1 30 23 22 25 1 0 55 1 0 22 4 0 10 1 0 42 14 11 38 9 7 11 7 3 25 2 1 11 chain 24000 chrX 155270560 + 8937971 8938262 AluSp 311 - 12 303 110329 291 chain 3756 chrX 155270560 + 8946858 8946935 MADE1 96 - 2 96 211019 19 5 6 22 10 26 21 chain 25960 chrX 155270560 + 8947962 8948239 L1PA2 6032 + 5755 6032 100169 277 chain 30641 chrX 155270560 + 8984536 8985045 L1PB1 5432 + 4897 5375 83138 205 0 1 10 4 1 21 1 0 12 1 0 6 10 6 10 6 4 47 3 2 14 1 0 37 8 7 16 3 0 6 16 6 19 7 4 15 2 0 29 chain 9309 chrX 155270560 + 8995490 8995622 MER85 139 + 0 139 164020 96 7 14 29 chain 26134 chrX 155270560 + 9003906 9004192 L1PA4 6152 + 5865 6151 99463 286 chain 32919 chrX 155270560 + 9010711 9011097 L1PA8A 6298 - 7 392 79340 101 1 0 284 chain 66169 chrX 155270560 + 9011494 9012240 L1PA5 6144 - 3 746 50018 6 3 0 737 chain 118809 chrX 155270560 + 9058877 9060296 HERVL-int 5654 - 1400 2837 31483 123 0 15 152 1 2 330 0 1 202 0 1 4 1 0 413 0 1 193 chain 32523 chrX 155270560 + 9117500 9117902 MER57B1 401 + 0 401 79987 70 1 0 331 chain 44105 chrX 155270560 + 9141559 9142632 L1PA15 4387 + 3636 4366 64078 125 0 4 34 17 15 13 4 0 38 35 33 9 5 0 25 1 0 80 2 0 3 321 0 84 7 6 26 1 0 54 1 0 23 4 0 9 1 0 50 6 3 17 0 9 15 8 6 12 5 0 26 1 0 11 chain 6799 chrX 155270560 + 9143389 9143484 MSTD 398 + 286 382 178959 34 4 5 57 chain 23858 chrX 155270560 + 9160066 9160370 AluY 311 + 0 300 111134 133 14 10 157 chain 28010 chrX 155270560 + 9162484 9162816 L1PA7 6471 + 6134 6470 92965 320 0 4 12 chain 41319 chrX 155270560 + 9197389 9197848 L1PA6 6164 - 10 469 67510 459 chain 20956 chrX 155270560 + 9242715 9242981 AluSg4 309 + 1 270 124080 10 2 0 123 1 6 130 chain 8524 chrX 155270560 + 9264483 9264624 Tigger2a 444 + 295 444 168169 9 0 6 80 19 21 33 chain 19885 chrX 155270560 + 9307342 9307567 AluY 311 + 81 305 127531 42 2 0 9 0 1 172 chain 6195 chrX 155270560 + 9317236 9317321 MER20 218 - 140 218 183615 47 7 0 31 chain 23930 chrX 155270560 + 9366847 9367144 AluY 311 + 11 309 110748 20 8 9 269 chain 4349 chrX 155270560 + 9395537 9395587 MLT1D 503 + 435 485 202600 50 chain 5332 chrX 155270560 + 9414479 9414538 U3 216 + 12 71 191705 59 chain 9540 chrX 155270560 + 9420080 9420201 MER2 342 + 99 220 162882 121 chain 21303 chrX 155270560 + 9440700 9440966 AluY 311 + 29 296 122844 103 0 1 10 3 0 7 0 3 143 chain 454379 chrX 155270560 + 9471156 9477110 L1PA8A 6298 + 43 6290 8600 15 2 1 7 3 0 5 2 0 7 6 1 19 3 0 21 1 0 4 33 25 9 3 2 11 1 0 7 3 5 5 2 0 17 7 4 13 2 1 7 1 0 6 1 0 8 1 0 6 13 9 7 1 0 57 6 0 66 1 7 12 2 0 15 2 0 9 15 13 142 29 14 61 0 1 16 0 1 310 0 1 46 1 0 63 0 4 35 13 5 25 0 1 47 0 4 295 20 0 120 0 10 254 1 0 5 0 3 172 3 16 409 2 0 132 4 0 121 5 9 428 1 3 155 4 3 84 0 12 17 0 2 187 0 3 90 0 2 113 0 343 882 1 0 398 0 3 75 7 9 76 0 1 429 0 2 106 1 2 15 45 19 65 chain 23151 chrX 155270560 + 9514278 9514577 AluY 311 + 7 297 114884 77 1 0 42 0 1 163 9 0 7 chain 5111 chrX 155270560 + 9524875 9524935 MLT1D 503 - 194 254 193965 60 chain 22461 chrX 155270560 + 9532503 9532788 AluSc 308 + 12 296 118192 31 16 15 238 chain 22729 chrX 155270560 + 9543019 9543384 THE1D 372 - 0 372 116930 138 30 28 12 0 2 5 20 27 58 1 0 23 1 2 77 chain 10861 chrX 155270560 + 9548038 9548186 MER4B 649 - 9 156 156738 7 1 0 52 0 1 18 1 0 69 chain 5096 chrX 155270560 + 9567283 9567375 MLT1C 463 - 285 391 194123 42 18 32 32 chain 6005 chrX 155270560 + 9611221 9611302 MER20 218 + 48 129 185197 32 0 1 7 1 0 41 chain 8063 chrX 155270560 + 9633377 9633494 LTR8A 794 + 0 102 170677 17 15 0 85 chain 19057 chrX 155270560 + 9635070 9635297 AluY 311 + 49 279 129950 82 0 2 105 0 1 40 chain 14219 chrX 155270560 + 9669514 9669721 MER30 238 - 6 204 143820 85 1 0 36 24 16 61 chain 21148 chrX 155270560 + 9717025 9717450 THE1D 372 + 0 357 123379 52 91 27 87 45 38 20 1 0 100 0 4 29 chain 3803 chrX 155270560 + 9756912 9756957 MER20 218 - 150 196 210349 34 0 1 11 chain 25004 chrX 155270560 + 9776623 9776911 AluSq10 312 + 4 293 104761 268 0 1 20 chain 32445 chrX 155270560 + 9777132 9777541 MLT2A1 477 - 2 477 80120 40 0 42 9 4 0 159 0 8 39 0 19 18 0 1 140 chain 457186 chrX 155270560 + 9777541 9783422 HERVL-int 5654 - 0 5654 8507 17 2 21 59 1 4 84 311 0 35 4 0 5 0 5 17 7 1 168 17 13 201 0 1 168 2 1 369 0 4 387 0 2 210 8 33 122 0 1 176 0 1 119 1 2 5 1 0 274 0 9 137 0 4 32 7 4 57 0 4 299 0 10 504 0 9 187 1 0 4 5 6 765 1 0 7 1 2 127 1 0 111 1 6 55 0 1 97 1 0 115 6 5 524 10 12 56 chain 30173 chrX 155270560 + 9783649 9784027 MLT2A1 477 - 92 477 84265 128 0 1 82 1 5 26 0 1 47 0 1 94 chain 24705 chrX 155270560 + 9799425 9799703 AluSp 311 + 9 287 106404 278 chain 29858 chrX 155270560 + 9816262 9816576 AluYb8 318 + 0 314 85250 314 chain 15972 chrX 155270560 + 9823149 9823346 L1PA7 6471 + 6269 6470 138443 43 1 0 8 2 7 143 chain 6782 chrX 155270560 + 9828153 9828289 MER20 218 + 71 206 179088 17 2 0 43 34 35 40 chain 27045 chrX 155270560 + 9832576 9832870 AluYa5 310 + 0 287 96132 93 7 0 194 chain 4873 chrX 155270560 + 9844301 9844374 MER21B 843 - 3 73 196564 10 5 2 58 chain 24541 chrX 155270560 + 9922100 9922481 MSTA 426 - 0 426 107305 109 1 21 47 15 13 23 2 1 56 18 46 110 chain 11600 chrX 155270560 + 9944903 9945154 MER2 342 + 91 342 153884 20 1 0 92 78 79 13 1 2 4 1 0 41 chain 10399 chrX 155270560 + 9956838 9956971 Tigger1 2417 + 1793 1927 158702 105 0 1 28 chain 23448 chrX 155270560 + 9963156 9963436 AluSc5 308 + 0 279 113389 123 4 3 153 chain 7352 chrX 155270560 + 10025141 10025322 L1MB7 1623 - 132 288 175078 13 1 0 23 46 27 6 1 0 47 1 0 11 3 1 19 1 0 9 chain 8025 chrX 155270560 + 10029271 10029362 HY3 101 + 10 101 170900 91 chain 6719 chrX 155270560 + 10041430 10041587 MER58A 224 + 51 218 179549 42 56 66 59 chain 24203 chrX 155270560 + 10044579 10044873 AluSc 308 - 10 303 109191 124 2 1 168 chain 8943 chrX 155270560 + 10059108 10059247 MER2B 336 - 1 132 165905 39 3 0 7 6 0 65 0 2 5 1 0 13 chain 20141 chrX 155270560 + 10117108 10117365 L1PA5 6144 - 1 258 126704 138 1 8 8 7 0 103 chain 6703 chrX 155270560 + 10173564 10173646 MER34 540 - 446 528 179666 82 chain 5810 chrX 155270560 + 10184658 10184738 MADE1 96 + 0 96 187041 42 1 17 37 chain 81577 chrX 155270560 + 10194098 10195209 L1P3 4156 + 2971 4072 42938 190 4 1 342 11 2 40 13 17 105 4 5 109 0 6 77 4 0 192 5 0 15 chain 45020 chrX 155270560 + 10197443 10197943 L1PA5 6144 - 7 507 63038 500 chain 6606 chrX 155270560 + 10217422 10217505 MLT1D 503 + 36 120 180410 48 0 1 35 chain 266776 chrX 155270560 + 10217770 10220703 L1PA4 6152 - 1 2947 15348 17 0 6 124 0 1 1325 0 6 1467 chain 14152 chrX 155270560 + 10243942 10244213 L1PB1 5432 + 5174 5422 144033 46 1 2 4 2 0 10 1 0 45 1 0 15 23 12 18 15 12 8 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 18702 chrX 155270560 + 10263526 10263909 MSTA 426 + 6 419 130937 101 13 37 62 49 43 27 8 1 21 39 58 63 chain 33064 chrX 155270560 + 10269922 10270814 L1PREC2 3366 + 2409 2962 79108 9 0 3 189 0 1 56 332 15 30 1 0 40 2 0 42 22 21 35 4 0 17 29 21 17 6 1 16 2 0 29 4 1 10 chain 10930 chrX 155270560 + 10272128 10272364 L1PB4 2604 - 54 227 156488 56 30 0 29 31 1 57 1 2 20 4 0 8 chain 200837 chrX 155270560 + 10272383 10274636 L1PA4 6152 - 7 2279 19156 106 0 1 969 1 10 381 1 7 406 0 3 389 chain 9606 chrX 155270560 + 10285407 10285548 L1PA5 6144 - 189 302 162565 51 28 0 62 chain 9674 chrX 155270560 + 10285548 10285660 L1PA5 6144 + 6024 6144 162225 49 0 8 63 chain 126732 chrX 155270560 + 10305939 10307342 L1PA4 6152 - 6 1410 28873 107 0 1 1296 chain 10541 chrX 155270560 + 10312864 10312981 AluYc 301 + 183 300 158081 117 chain 24134 chrX 155270560 + 10336189 10336485 AluSp 311 + 0 294 109558 35 1 0 178 6 5 76 chain 100805 chrX 155270560 + 10352936 10354072 L1PA4 6152 - 7 1143 36559 200 0 1 650 1 0 285 chain 13107 chrX 155270560 + 10354072 10357923 L1PA4 6152 + 4904 6143 147787 90 3609 997 152 chain 64673 chrX 155270560 + 10373294 10374052 L1PA5 6144 + 5352 6102 50708 652 8 0 98 chain 79994 chrX 155270560 + 10385567 10386457 L1PA4 6152 - 0 900 43598 139 0 7 251 0 3 500 chain 24005 chrX 155270560 + 10419598 10419958 THE1B 368 + 0 368 110304 44 0 15 55 1 0 4 5 6 48 2 0 89 6 7 19 9 1 9 2 0 9 0 4 58 chain 6568 chrX 155270560 + 10438271 10438388 MER58A 224 - 50 173 180718 55 1 0 4 19 26 38 chain 33299 chrX 155270560 + 10456632 10457066 MLT2A1 477 + 0 477 78732 46 0 1 91 0 1 30 1 5 5 0 1 139 0 4 61 8 40 53 chain 13609 chrX 155270560 + 10492342 10492564 MER30 238 - 0 238 145942 72 0 1 38 4 20 60 34 33 14 chain 171079 chrX 155270560 + 10528317 10530415 L1PA8 5853 + 3749 5853 21932 136 0 1 349 0 1 102 1 2 107 1 4 18 1 0 540 2 0 80 3 0 157 1 3 315 1 0 45 2 0 69 2 1 9 19 20 38 1 0 14 1 0 52 0 9 32 chain 242029 chrX 155270560 + 10553439 10556365 Harlequin-int 5206 - 1186 4906 16670 330 5 8 194 26 19 165 0 1 736 1 0 126 0 1 775 0 778 125 0 2 72 1 2 201 3 0 122 6 21 32 0 4 6 chain 26261 chrX 155270560 + 10557892 10558380 LTR2B 499 - 0 499 98973 42 58 57 53 16 14 24 0 1 82 0 11 93 2 0 4 6 0 7 5 4 26 17 29 38 1 0 14 chain 9508 chrX 155270560 + 10563290 10563478 L1MA5 2750 + 2487 2661 163024 75 1 0 8 25 13 28 5 6 15 2 1 13 1 0 15 chain 523381 chrX 155270560 + 10606124 10612199 L1PA5 6144 + 2 6138 4829 45 3 33 41 0 14 24 3 10 8 0 5 982 14 5 540 1 0 592 5 6 669 0 1 168 5 1 20 1 0 319 1 4 19 0 1 815 1 3 5 2 0 9 0 4 1172 1 11 610 chain 29951 chrX 155270560 + 10636977 10637295 AluYb8 318 + 0 318 84963 318 chain 46873 chrX 155270560 + 10653278 10653903 MER39B 650 + 0 650 61332 35 0 12 187 1 0 112 0 1 106 1 2 143 2 0 16 0 9 6 1 6 15 chain 4884 chrX 155270560 + 10656838 10656899 LTR23 429 + 0 63 196434 14 0 2 47 chain 76004 chrX 155270560 + 10659381 10660451 MER11A 1151 + 0 1151 45477 79 7 15 95 19 18 21 1 0 66 0 11 143 0 1 233 20 24 37 0 4 72 0 1 14 0 57 100 1 0 94 8 7 20 6 5 34 chain 26644 chrX 155270560 + 10674391 10674767 THE1C 375 + 0 375 97498 108 15 12 20 1 5 130 1 0 75 1 0 25 chain 546140 chrX 155270560 + 10683099 10689240 L1PA4 6152 + 0 6143 1925 581 0 3 5 3 0 467 0 8 7 13 6 1235 2 1 1567 0 1 1472 0 1 789 chain 106828 chrX 155270560 + 10731211 10732423 L1PA5 6144 - 6 1216 35030 106 1 0 37 1 0 1067 chain 31656 chrX 155270560 + 10790019 10790665 L1PB1 5432 + 4856 5417 81394 18 0 3 14 0 12 191 79 12 8 1 0 24 1 0 8 1 0 10 18 12 52 2 1 16 2 1 21 0 1 4 2 1 15 1 0 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 14 15 14 17 1 0 13 1 0 13 chain 16954 chrX 155270560 + 10802925 10803110 L1PA4 6152 + 3969 4154 135717 185 chain 178164 chrX 155270560 + 10803110 10805091 L1PA4 6152 + 4164 6137 21148 1653 1 2 260 9 0 58 chain 4777 chrX 155270560 + 10810289 10810350 MER58A 224 - 114 175 197617 61 chain 68499 chrX 155270560 + 10819709 10821130 L1PA16 3655 + 2485 3576 49038 146 49 48 116 355 23 70 12 10 58 0 1 23 4 5 11 0 12 114 20 13 61 10 9 42 1 0 4 1 2 30 9 7 125 10 11 150 chain 110520 chrX 155270560 + 10823191 10824398 L1PA3long 6157 - 0 1206 34070 872 1 0 334 chain 112497 chrX 155270560 + 10826772 10828044 L1PA5 6144 + 4859 6143 33540 1041 2 8 122 5 11 102 chain 15732 chrX 155270560 + 10835841 10836029 AluSz6 309 - 112 301 139168 61 0 1 127 chain 55296 chrX 155270560 + 10840222 10841024 L1PA11 4918 + 3783 4578 55524 397 0 5 146 9 19 43 2 1 13 2 0 25 0 2 5 2 0 35 2 0 15 2 1 18 4 0 9 31 22 15 1 0 13 2 0 11 chain 16531 chrX 155270560 + 10858214 10858555 L1PB1 5432 + 5114 5422 136831 24 1 0 6 1 0 14 5 1 9 3 1 51 2 1 15 1 0 45 8 7 7 4 0 17 0 3 5 44 26 24 1 0 21 1 0 13 1 0 18 chain 341808 chrX 155270560 + 10887958 10892031 L1P2 5180 + 2 4078 11842 143 6 5 44 1 0 41 0 2 6 1 0 250 10 9 12 0 1 45 0 3 63 28 12 145 0 15 1385 0 1 143 0 1 883 2 0 4 0 1 297 3 2 474 2 0 52 0 4 33 chain 22991 chrX 155270560 + 10892058 10892319 L1PA6 6164 + 5901 6162 115666 261 chain 2956 chrX 155270560 + 10897125 10897156 MIRb 242 - 190 221 225946 31 chain 7604 chrX 155270560 + 10907411 10907541 L1PB1 5432 - 5 124 173518 5 2 0 10 1 0 8 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 chain 7433 chrX 155270560 + 10914514 10914607 MER5A1 166 + 40 134 174557 69 0 1 24 chain 70704 chrX 155270560 + 10914607 10915587 L1PA16 3655 + 2493 3481 48066 142 10 22 20 1 0 87 0 3 121 11 10 24 1 0 46 12 14 221 1 0 88 2 0 43 3 0 147 chain 16364 chrX 155270560 + 10918195 10918372 L1PA4 6152 + 5975 6152 137299 177 chain 135059 chrX 155270560 + 10958736 10960245 L1PA5 6144 - 2 1514 27007 257 1 0 151 0 1 361 0 2 280 0 1 459 chain 345169 chrX 155270560 + 10972055 10976620 L1PA11 4918 + 7 4578 11752 37 2 0 35 12 10 4 1 0 23 1 0 12 2 0 52 1 0 26 0 3 3 4 0 6 2 1 78 0 1 176 1 0 222 0 6 246 0 15 625 0 4 220 1 2 304 0 3 74 2 1 5 0 1 6 2 0 33 1 0 83 9 19 74 4 0 130 22 7 80 1 0 42 0 17 205 4 10 35 1 0 432 0 3 317 1 0 18 0 1 393 5 6 213 8 2 58 9 8 13 2 1 50 0 1 16 2 0 13 0 2 5 3 0 9 24 16 10 13 9 15 1 0 13 2 0 11 chain 8845 chrX 155270560 + 10984019 10984115 L1PA4 6152 - 161 257 166401 96 chain 14387 chrX 155270560 + 10984115 10984282 L1PA4 6152 + 5985 6152 143238 167 chain 214210 chrX 155270560 + 10984694 10987056 L1PA3long 6157 - 0 2364 18214 623 0 2 891 4 0 275 0 4 569 chain 41255 chrX 155270560 + 10991394 10991842 L1PA2 6032 - 2 450 67587 448 chain 118189 chrX 155270560 + 10993559 10994856 L1PA3long 6157 - 5 1302 31730 1297 chain 299034 chrX 155270560 + 11017239 11020489 L1PA3long 6157 + 2907 6157 13476 3250 chain 390265 chrX 155270560 + 11036099 11040513 L1PA5 6144 - 0 4449 10448 1554 7 4 233 1 3 26 0 1 52 2 11 386 0 1 709 0 1 480 3 0 664 0 1 130 0 22 25 0 4 142 chain 236716 chrX 155270560 + 11040535 11043372 L1P3 4156 - 1312 4153 16943 207 1 2 19 19 14 96 0 1 479 1 0 255 1 2 18 0 5 715 1 7 499 2 0 205 1 0 68 11 10 239 chain 52234 chrX 155270560 + 11051866 11052450 LTR14C 587 + 0 587 57473 12 0 2 564 0 1 8 chain 11807 chrX 155270560 + 11052498 11052657 L1PA16 3655 + 3429 3586 152999 26 0 1 122 3 0 8 chain 9970 chrX 155270560 + 11058707 11058833 MER20 218 + 92 218 160724 126 chain 62865 chrX 155270560 + 11072427 11073123 L1PA4 6152 + 5446 6143 51502 562 0 1 134 chain 7890 chrX 155270560 + 11084400 11084500 L1PA16 3655 - 92 192 171731 100 chain 37995 chrX 155270560 + 11106371 11106989 L1PREC2 3366 + 2475 3051 72140 277 2 0 54 1 0 44 53 38 17 7 2 14 3 1 30 34 19 38 3 1 41 chain 22998 chrX 155270560 + 11107445 11107741 L1PA7 6471 - 3 297 115631 145 21 19 130 chain 8438 chrX 155270560 + 11134213 11134313 HY3 101 - 1 101 168633 100 chain 35519 chrX 155270560 + 11141298 11141798 L1PA7 6471 + 6004 6469 75529 233 2 6 50 1 5 10 11 0 12 23 0 141 9 0 8 chain 28412 chrX 155270560 + 11146828 11147134 AluYg6 310 + 1 307 91530 306 chain 5845 chrX 155270560 + 11153032 11153259 MER53 195 + 0 195 186728 24 50 63 18 78 33 57 chain 39268 chrX 155270560 + 11171935 11172371 L1PA4 6152 - 1 436 70374 258 1 0 177 chain 7285 chrX 155270560 + 11201216 11201344 L1PB1 5432 + 5309 5427 175550 18 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 1 0 5 chain 4131 chrX 155270560 + 11209234 11209284 MER58A 224 - 6 59 205487 7 0 3 43 chain 181003 chrX 155270560 + 11234835 11237010 L1PA7 6471 - 1 2933 20898 4 1 0 22 3 1 129 0 1 386 0 1 303 2 4 467 5 6 329 0 4 18 7 754 493 0 4 6 chain 128735 chrX 155270560 + 11237010 11238400 L1PA2 6032 - 4 1394 28329 1390 chain 73782 chrX 155270560 + 11238400 11239219 L1HS 6032 + 1512 2331 46629 819 chain 34340 chrX 155270560 + 11244122 11244538 L1PA5 6144 - 0 425 77144 63 0 1 74 0 7 112 1 2 166 chain 80845 chrX 155270560 + 11253107 11254175 THE1C-int 1605 - 517 1589 43248 119 0 1 163 0 5 48 6 0 300 6 13 180 1 2 74 21 15 12 1 3 137 chain 21369 chrX 155270560 + 11254191 11254564 THE1C 375 - 0 375 122620 81 9 11 84 21 22 20 11 15 72 25 20 50 chain 70403 chrX 155270560 + 11266492 11267526 L1PB1 5432 + 4422 5416 48213 204 3 0 81 0 1 395 1 2 9 7 0 22 1 0 11 1 0 11 4 0 9 2 0 46 7 6 18 1 0 40 71 54 15 2 0 26 1 0 20 1 0 12 1 0 12 chain 6062 chrX 155270560 + 11304333 11304419 L1PB1 5432 - 5 86 184729 5 2 0 18 1 0 12 1 0 22 1 0 24 chain 8127 chrX 155270560 + 11337457 11337617 MER5A 189 - 22 184 170351 79 6 6 24 38 40 13 chain 63116 chrX 155270560 + 11342015 11342937 HSMAR2 1300 + 331 1294 51394 10 0 5 58 1 0 320 0 3 109 7 6 61 6 38 12 6 5 117 10 4 97 1 0 41 1 10 7 0 4 17 1 0 7 5 0 6 4 8 18 chain 26981 chrX 155270560 + 11342982 11343266 AluYb8 318 - 23 307 96345 284 chain 26148 chrX 155270560 + 11351293 11351625 THE1C 375 + 0 336 99410 142 0 4 190 chain 36212 chrX 155270560 + 11353347 11353780 L1PA7 6471 - 5 438 74613 433 chain 3152 chrX 155270560 + 11362324 11362358 MER20 218 - 88 122 221896 34 chain 19830 chrX 155270560 + 11374300 11374548 L1PA8 5853 + 5608 5853 127713 74 1 0 58 2 1 19 2 1 92 chain 277412 chrX 155270560 + 11377721 11380770 L1PA3long 6157 + 3089 6142 14782 1266 1 5 1782 chain 24913 chrX 155270560 + 11390615 11390920 AluY 311 + 5 311 105251 120 3 4 182 chain 107779 chrX 155270560 + 11405691 11406892 L1PA4 6152 - 17 1218 34782 1201 chain 33880 chrX 155270560 + 11408120 11408491 L1PA5 6144 - 1073 1444 77807 371 chain 96214 chrX 155270560 + 11408492 11409595 L1PA5 6144 + 5042 6144 37762 1090 2 1 11 chain 4646 chrX 155270560 + 11433008 11433234 L1MA8 2339 + 2121 2322 199100 16 0 1 19 88 80 20 1 0 8 5 2 12 34 20 23 chain 97427 chrX 155270560 + 11509339 11510427 L1PA3long 6157 - 0 1096 37447 55 0 4 784 0 4 249 chain 4985 chrX 155270560 + 11510427 11510480 L1PA3long 6157 + 5008 5061 192352 53 chain 5823 chrX 155270560 + 11513893 11514291 MLT1F2 592 + 105 528 186916 40 219 243 30 77 78 32 chain 62247 chrX 155270560 + 11524366 11525129 L1PA6 6164 - 4 769 51780 8 1 0 366 8 9 269 0 2 111 chain 8450 chrX 155270560 + 11534391 11534505 L1MB3 1562 - 7 120 168564 31 1 0 82 chain 81195 chrX 155270560 + 11536751 11537644 L1PA2 6032 - 0 895 43089 13 2 0 839 0 4 39 chain 52709 chrX 155270560 + 11537644 11538220 L1PA2 6032 + 4555 5131 57131 576 chain 163420 chrX 155270560 + 11538298 11540168 L1PA5 6144 - 15 1890 22888 97 1 0 37 0 1 693 0 4 326 0 1 716 chain 135107 chrX 155270560 + 11540168 11541678 L1PA5 6144 + 2793 4305 26976 632 6 7 249 1 2 622 chain 4708 chrX 155270560 + 11557302 11557413 MER20 218 - 89 218 198407 26 19 18 35 15 34 16 chain 162255 chrX 155270560 + 11590310 11592107 L1PA3long 6157 - 0 1801 23026 843 0 4 954 chain 83010 chrX 155270560 + 11592108 11593007 L1PA3long 6157 + 3407 4306 42334 899 chain 67969 chrX 155270560 + 11596481 11597309 L1PA6 6164 + 5335 6156 49257 63 0 1 617 9 1 139 chain 103893 chrX 155270560 + 11613443 11614703 L1PA7 6471 + 5207 6470 35750 407 3 0 8 0 7 508 2 1 36 0 1 146 2 1 148 chain 4509 chrX 155270560 + 11638837 11638895 MER20 218 + 30 87 200684 17 1 0 40 chain 23912 chrX 155270560 + 11641547 11641836 AluY 311 + 18 302 110852 105 0 3 6 8 0 170 chain 31471 chrX 155270560 + 11657338 11657710 L1PA6 6164 - 3 375 81687 372 chain 28823 chrX 155270560 + 11693008 11693314 AluYg6 310 - 4 310 89792 306 chain 29836 chrX 155270560 + 11693320 11693714 LOR1b 457 + 41 457 85329 5 0 2 78 1 18 121 1 2 175 0 2 13 chain 29330 chrX 155270560 + 11723756 11724122 MER50 708 - 22 389 87393 24 0 1 218 0 1 76 2 1 46 chain 568385 chrX 155270560 + 11725368 11731399 L1HS 6032 + 0 6032 13 74 0 1 5957 chain 106055 chrX 155270560 + 11745127 11746565 L1PA16 3655 - 63 1495 35241 14 3 0 6 0 3 268 16 14 11 3 4 68 1 0 219 1 2 61 2 1 22 15 14 51 3 2 155 3 2 406 1 0 109 chain 4424 chrX 155270560 + 11751524 11751636 MER20 218 - 110 218 201657 17 1 0 4 8 10 40 0 2 5 23 16 14 chain 12431 chrX 155270560 + 11820787 11820965 L1MA7 2200 + 1573 1760 150528 124 15 24 39 chain 27222 chrX 155270560 + 11832473 11832772 L1PA2 6032 - 0 299 95519 299 chain 27156 chrX 155270560 + 11834982 11835348 THE1B 368 - 0 368 95735 128 2 1 7 1 0 27 10 15 21 1 0 169 chain 3051 chrX 155270560 + 11835921 11835958 MER89 557 - 53 90 223983 37 chain 7385 chrX 155270560 + 11858177 11858393 L1ME1 1623 - 1243 1451 174870 42 26 20 37 76 74 35 chain 200078 chrX 155270560 + 11858865 11861062 L1PA3long 6157 - 0 2195 19205 333 2 0 1862 chain 248562 chrX 155270560 + 11863449 11866161 L1PA3long 6157 + 3445 6157 16330 2712 chain 176378 chrX 155270560 + 11870711 11875453 L1PA13 3608 + 1053 3485 21319 247 1 5 207 1 5 46 0 4 317 0 13 34 3 4 13 32 37 352 3 0 111 2324 0 91 1 0 4 0 1 34 0 1 102 2 0 447 1 0 32 1 0 115 3 1 60 2 1 55 1 0 4 2 0 47 2 0 5 5 3 16 1 0 18 chain 118999 chrX 155270560 + 11872443 11874035 THE1C-int 1605 - 0 1590 31411 185 9 0 35 1 0 56 0 1 94 5 6 477 16 10 235 17 16 31 20 27 86 13 19 312 chain 33175 chrX 155270560 + 11881124 11881525 L1PA4 6152 - 9 384 78946 43 26 0 332 chain 4083 chrX 155270560 + 11892199 11892276 MER2 342 + 87 154 206157 16 14 5 10 1 0 36 chain 25780 chrX 155270560 + 11905385 11905728 MER83C 372 + 0 331 100968 160 12 0 171 chain 9409 chrX 155270560 + 11935184 11935356 L1PA17 2846 + 2526 2693 163510 7 1 0 7 1 2 42 23 20 27 1 0 18 1 0 44 chain 239229 chrX 155270560 + 11942242 11945716 L1PA13 3608 + 95 3541 16815 14 6 4 23 2 0 6 2 1 20 21 17 21 44 59 31 2 0 128 3 2 7 1 0 17 2 0 17 30 25 13 3 1 15 3 1 15 1 0 99 2 0 110 0 2 93 0 3 188 0 3 16 0 1 66 13 4 60 2 0 114 0 3 5 2 3 71 0 4 82 5 6 155 2 1 136 2 1 96 0 13 94 0 4 204 0 1 47 0 3 7 9 6 8 17 0 88 1 0 79 9 7 234 5 7 61 0 1 60 0 6 303 0 7 34 8 0 58 0 1 87 2 0 62 6 5 51 1 0 4 2 0 48 14 9 13 1 0 22 24 16 14 14 7 10 1 0 6 chain 19894 chrX 155270560 + 11946326 11946679 THE1C 375 - 0 368 127504 26 1 0 42 0 5 44 75 68 6 0 4 98 5 19 56 chain 567824 chrX 155270560 + 11953402 11959433 L1HS 6032 - 0 6032 36 5959 0 1 72 chain 18903 chrX 155270560 + 11968107 11968446 THE1D 372 + 0 332 130358 37 19 10 20 11 12 86 45 46 121 chain 22120 chrX 155270560 + 11973626 11973889 AluYc 301 + 38 298 119702 73 2 0 10 0 1 171 2 0 5 chain 4705 chrX 155270560 + 11975249 11975317 LTR37A 408 - 0 63 198465 13 1 0 29 4 0 21 chain 3385 chrX 155270560 + 11986878 11986916 LTR32 486 - 413 451 217366 38 chain 70236 chrX 155270560 + 12001871 12002855 HSMAR2 1300 - 2 958 48297 18 1 9 50 53 8 106 20 23 260 0 8 21 1 0 135 1 0 318 chain 209200 chrX 155270560 + 12004406 12007465 L1MA2 4263 + 1133 4114 18550 281 9 12 92 0 1 10 0 4 6 2 0 26 0 1 85 0 11 79 0 1 230 23 0 40 0 1 45 0 1 12 0 3 42 14 15 408 2 0 105 1 0 5 1 2 34 33 12 70 0 1 382 0 1 7 1 0 213 11 0 5 1 2 11 3 0 45 7 6 127 1 0 17 6 1 77 1 0 107 96 93 84 24 0 10 11 9 93 7 0 46 1 0 10 chain 6675 chrX 155270560 + 12012248 12012350 MER20 218 + 86 184 179867 74 11 7 17 chain 2436 chrX 155270560 + 12019078 12019121 MER46C 351 + 134 177 233903 22 6 6 15 chain 3744 chrX 155270560 + 12067670 12067711 Tigger3c 601 + 51 92 211274 41 chain 6047 chrX 155270560 + 12078086 12078188 MER39B 650 - 455 561 184836 11 1 2 59 10 13 21 chain 26399 chrX 155270560 + 12100284 12100638 THE1A 353 + 0 353 98414 75 4 5 29 2 1 92 1 0 151 chain 129733 chrX 155270560 + 12100638 12102205 THE1A-int 1579 + 0 1574 28143 12 4 6 220 0 3 691 1 0 248 0 2 296 1 2 94 chain 26613 chrX 155270560 + 12102211 12102559 THE1A 353 + 0 341 97619 88 6 1 20 2 1 88 1 0 143 chain 20640 chrX 155270560 + 12117105 12117341 L1PA3long 6157 + 5920 6149 125158 83 7 0 146 chain 536600 chrX 155270560 + 12124545 12130690 L1PA5 6144 + 3 6138 3363 251 0 1 66 0 3 117 1 0 716 24 0 60 3 4 212 6 5 926 0 1 880 0 4 413 12 13 861 1 2 759 0 4 681 7 10 5 3 0 141 chain 109422 chrX 155270560 + 12145707 12147283 THE1C-int 1605 - 0 1605 34336 422 26 27 103 0 40 261 6 0 51 0 1 4 12 11 188 13 28 13 92 18 262 0 54 100 9 8 14 chain 27389 chrX 155270560 + 12147283 12147648 THE1C 375 - 0 375 95004 144 1 2 46 0 2 36 1 5 76 1 4 60 chain 5895 chrX 155270560 + 12167253 12167322 HY1 111 + 9 78 186227 69 chain 8554 chrX 155270560 + 12168839 12168943 Tigger1 2417 + 1291 1395 167997 104 chain 28113 chrX 155270560 + 12171042 12171347 AluYb8 318 - 9 311 92596 183 3 0 119 chain 302454 chrX 155270560 + 12182166 12185554 L1PA4 6152 - 0 3385 13299 21 1 0 92 0 1 139 2 1 472 1 0 2219 2 1 439 chain 12173 chrX 155270560 + 12190264 12190457 MER107 203 - 0 203 151529 27 3 0 84 0 2 5 28 39 46 chain 3307 chrX 155270560 + 12198255 12198291 MER3 215 + 47 83 218821 36 chain 5465 chrX 155270560 + 12202719 12202810 L1MA2 4263 + 4031 4114 190356 25 14 7 42 1 0 9 chain 4487 chrX 155270560 + 12235531 12235584 tRNA-Met 55 + 0 53 200955 53 chain 21739 chrX 155270560 + 12256258 12256550 AluSp 311 - 27 304 121244 227 25 10 40 chain 42752 chrX 155270560 + 12294333 12294922 MER4B 649 - 8 649 65718 8 1 0 18 1 0 51 1 0 205 0 15 108 1 2 17 0 1 17 0 42 125 2 0 7 2 0 25 chain 37308 chrX 155270560 + 12328145 12328594 LTR7 482 - 0 482 73072 49 12 14 122 0 31 12 1 0 213 0 1 40 chain 23930 chrX 155270560 + 12369012 12369306 AluSc5 308 + 0 294 110756 163 0 2 109 6 4 16 chain 92980 chrX 155270560 + 12380333 12381368 L1PA5 6144 - 6 1042 38662 271 0 1 764 chain 3745 chrX 155270560 + 12389900 12390010 MER53 195 - 14 122 211247 42 44 43 7 1 0 16 chain 8526 chrX 155270560 + 12406763 12406937 L1MA7 2200 + 1625 1789 168159 20 49 40 34 1 0 70 chain 439227 chrX 155270560 + 12490653 12495587 L1PA4 6152 + 1207 6152 9071 731 0 4 17 5 0 758 0 1 126 0 4 678 1 0 2101 0 10 371 0 1 136 3 0 7 chain 46179 chrX 155270560 + 12527150 12527839 L1PB1 5432 + 4760 5418 61865 7 0 1 223 0 3 108 1 0 12 3 0 20 1 0 12 1 0 12 4 0 9 2 0 53 2 1 15 1 0 44 1 0 16 24 12 19 11 8 11 2 0 24 1 0 21 1 0 13 1 0 14 chain 305292 chrX 155270560 + 12531769 12535796 L1PA10 4194 - 33 4019 13199 11 1 0 34 3 0 758 16 22 375 5 0 227 0 1 32 13 29 203 0 11 225 3 7 231 15 7 93 2 0 74 2 1 526 0 4 65 0 3 263 0 1 80 12 0 332 6 11 45 10 8 77 1 0 10 7 0 15 1 0 10 10 8 9 1 0 16 2 0 12 61 35 4 1 0 15 2 0 21 1 0 9 1 0 9 42 31 15 2 0 11 chain 7894 chrX 155270560 + 12543395 12543490 MER49 923 + 151 249 171689 8 0 3 87 chain 3385 chrX 155270560 + 12551076 12551116 Charlie4a 502 + 384 424 217378 40 chain 124584 chrX 155270560 + 12551503 12553072 THE1B-int 1605 + 0 1600 29511 25 3 0 5 0 5 395 1 26 25 0 1 148 0 1 420 0 1 214 1 0 7 0 1 313 0 1 12 chain 19153 chrX 155270560 + 12553077 12553469 THE1B 368 + 0 368 129673 44 6 21 90 22 0 11 3 2 16 87 71 113 chain 527976 chrX 155270560 + 12556003 12562361 L1PA5 6144 + 3 6140 4406 116 16 48 253 0 1 110 0 2 285 0 17 14 0 3 238 9 27 316 2 1 311 1 0 77 300 0 934 0 1 1193 0 2 271 0 1 116 0 4 65 4 0 114 0 1 104 1 0 851 0 3 330 0 1 327 chain 7585 chrX 155270560 + 12569988 12570175 L1MC5 759 - 355 562 173636 29 76 96 82 chain 22878 chrX 155270560 + 12575293 12575683 LTR49 580 - 153 579 116195 49 10 40 26 0 9 67 9 8 4 0 1 55 9 7 26 2 0 37 30 31 66 chain 29580 chrX 155270560 + 12578877 12579187 AluYa5 310 - 0 310 86275 310 chain 2777 chrX 155270560 + 12579896 12579939 MLT1K 546 - 18 60 229072 20 4 3 19 chain 10181 chrX 155270560 + 12632198 12632316 7SK 245 - 127 245 159711 118 chain 4871 chrX 155270560 + 12632530 12632622 MER5A1 166 + 26 138 196588 51 18 38 23 chain 5665 chrX 155270560 + 12633888 12633968 MADE1 96 - 0 96 188429 37 1 17 42 chain 5178 chrX 155270560 + 12640264 12640343 L1M3a 1038 + 800 883 193247 53 9 13 17 chain 22414 chrX 155270560 + 12649527 12649778 L1PA7 6471 - 13 264 118411 251 chain 249917 chrX 155270560 + 12680318 12683707 L1PA7 6471 - 1 3016 16259 6 4 0 843 18 17 137 0 5 85 12 16 282 8 0 627 1 0 79 0 1 841 0 2 6 373 0 19 5 6 43 chain 226694 chrX 155270560 + 12683707 12689859 L1PA7 6471 + 2114 6465 17496 46 1 5 179 0 1 287 4 0 29 0 1 6 1 0 410 0 1 157 1 5 34 9 2 178 3386 1579 245 0 4 338 1 0 79 3 6 211 0 1 547 chain 38873 chrX 155270560 + 12717845 12718394 MER39B 650 - 78 650 70909 190 0 8 27 0 1 111 4 7 113 23 22 36 1 13 44 chain 26663 chrX 155270560 + 12751972 12752283 AluSp 311 + 0 308 97442 132 3 0 176 chain 13449 chrX 155270560 + 12763536 12763716 MER4A1 472 + 279 458 146534 117 7 5 47 0 1 9 chain 55696 chrX 155270560 + 12764801 12765428 L1PA5 6144 + 5517 6144 55307 627 chain 14611 chrX 155270560 + 12772445 12772639 MLT2B4 540 - 334 529 142551 109 7 8 78 chain 8778 chrX 155270560 + 12779095 12779235 MER5A 189 - 37 189 166775 18 1 8 30 15 20 76 chain 10815 chrX 155270560 + 12781678 12781809 MSTD 398 - 267 398 156913 131 chain 4149 chrX 155270560 + 12805446 12805494 L1MB8 1703 - 1046 1094 205250 48 chain 9344 chrX 155270560 + 12807098 12807240 MER20 218 + 37 183 163836 40 10 12 67 1 3 24 chain 14011 chrX 155270560 + 12819022 12819310 MER58B 340 - 58 340 144542 35 20 22 88 17 23 52 37 23 39 chain 3140 chrX 155270560 + 12839754 12839790 U2 167 - 117 153 222174 36 chain 542506 chrX 155270560 + 12851165 12857939 L1PA7 6471 - 14 6471 2424 750 1 6 80 1 0 160 0 2 467 9 8 35 3 0 40 0 1 1489 0 2 59 1 0 210 0 1 47 0 4 105 0 1 289 1 0 60 332 0 292 0 1 88 2 0 8 0 1 87 0 1 23 0 5 367 0 1 588 4 5 771 2 0 403 chain 7362 chrX 155270560 + 12864249 12864355 MER53 195 - 0 195 175021 53 0 4 29 1 86 23 chain 463409 chrX 155270560 + 12866926 12872622 L1PA8 5853 - 0 5745 8275 93 2 1 18 2 1 52 1 0 10 1 0 70 2 0 46 1 0 220 0 1 254 2 3 74 2 0 584 6 4 347 1 3 258 0 22 957 0 4 49 1 6 747 6 4 98 8 5 15 0 2 66 0 3 129 6 7 555 0 1 22 7 5 5 0 2 197 0 1 291 0 4 9 7 14 75 0 23 184 23 10 47 5 6 141 chain 542630 chrX 155270560 + 12876425 12882555 L1PA5 6144 - 7 6144 2402 106 1 0 654 1 0 749 1 0 279 0 4 345 1 2 508 0 4 1738 0 1 1598 0 14 15 14 0 120 chain 4089 chrX 155270560 + 12899007 12899056 MIR 256 + 100 149 206087 49 chain 5899 chrX 155270560 + 12900692 12900804 MER63B 433 + 319 433 186201 53 13 0 9 9 24 28 chain 32198 chrX 155270560 + 12918160 12918608 MER4A1 472 + 0 472 80525 15 4 7 10 1 0 102 1 0 37 0 1 53 0 21 23 9 10 193 chain 25400 chrX 155270560 + 12919092 12919381 AluYc 301 + 1 293 102685 119 0 2 148 0 1 22 chain 246703 chrX 155270560 + 12944333 12947032 L1PA3long 6157 + 3461 6157 16414 1846 2 1 844 2 0 5 chain 44699 chrX 155270560 + 12951207 12952077 L1PREC2 3366 + 1577 2154 63379 14 1 0 46 14 9 168 287 0 340 chain 31308 chrX 155270560 + 12957983 12958395 LTR7 482 + 0 482 81975 68 9 47 109 0 1 29 0 30 23 2 3 172 chain 293475 chrX 155270560 + 12958397 12961984 HERVH-int 3825 + 0 3825 13797 521 65 1 8 1 0 11 1 90 25 0 20 15 7 6 82 1 0 60 1 4 386 15 0 200 9 0 26 0 2 13 1 0 216 1 6 240 11 0 844 0 5 289 9 11 39 8 218 136 0 2 122 0 2 146 0 1 78 chain 30907 chrX 155270560 + 12963245 12963656 LTR7 482 + 0 482 82671 69 8 46 109 0 1 39 0 31 11 1 2 174 chain 5176 chrX 155270560 + 12963746 12963823 MADE1 96 - 1 96 193277 40 7 25 30 chain 46023 chrX 155270560 + 12964312 12964944 MER4A1_ 611 - 0 611 62025 13 0 1 210 1 0 38 3 4 51 17 0 20 1 2 62 3 0 78 8 3 78 0 2 49 chain 6508 chrX 155270560 + 12971143 12971221 LTR49 580 + 501 579 181176 78 chain 17275 chrX 155270560 + 12976678 12976909 Tigger3a 397 - 2 258 134850 33 0 15 185 2 12 11 chain 156560 chrX 155270560 + 12980723 12982554 SVA_D 2077 + 1 2074 23790 16 9 2 16 3 6 427 5 0 306 0 40 106 1 0 27 11 225 8 0 1 207 0 1 4 15 14 36 1 2 623 4 0 6 chain 34343 chrX 155270560 + 13004039 13004456 MLT2A1 477 + 0 475 77137 153 0 1 15 4 1 213 0 60 32 chain 21054 chrX 155270560 + 13008091 13008442 MSTC 436 + 0 371 123713 96 30 31 33 13 30 124 2 0 11 13 17 29 chain 26480 chrX 155270560 + 13034766 13035197 MER57A1 433 + 1 433 98125 233 91 92 107 chain 9585 chrX 155270560 + 13066296 13066441 MER20 218 + 31 178 162666 40 9 11 5 2 0 73 0 2 16 chain 29150 chrX 155270560 + 13079368 13079725 THE1B 368 - 0 368 88313 97 0 1 73 4 0 28 1 0 110 0 15 44 chain 127041 chrX 155270560 + 13079725 13081308 THE1B-int 1605 - 0 1605 28805 9 0 1 37 11 11 373 2 0 715 0 2 6 0 23 11 1 0 5 1 2 74 2 0 336 chain 21201 chrX 155270560 + 13097708 13098000 AluSg7 307 - 7 299 123211 18 2 0 127 3 6 6 0 3 14 0 3 5 7 0 110 chain 43804 chrX 155270560 + 13101914 13102539 LTR9B 643 - 12 638 64443 28 17 15 137 21 22 109 0 1 10 0 1 82 2 1 15 10 9 13 0 1 110 1 0 38 0 2 32 chain 8758 chrX 155270560 + 13110663 13110785 MER20 218 + 42 157 166874 41 3 0 6 4 0 68 chain 5153 chrX 155270560 + 13132580 13132657 MER65C 458 + 0 78 193523 54 7 8 16 chain 68586 chrX 155270560 + 13135414 13136352 MER11C 1089 - 0 1089 48995 29 9 8 20 5 1 247 1 9 171 17 18 36 11 47 166 1 18 57 0 3 113 0 91 55 chain 562794 chrX 155270560 + 13150440 13156585 L1PA3long 6157 - 0 6147 274 4 0 1 2140 0 1 4001 chain 2829 chrX 155270560 + 13165753 13165795 Tigger5 388 - 55 95 228263 35 2 0 5 chain 24161 chrX 155270560 + 13173751 13174057 THE1D-int 1627 - 0 308 109423 33 0 3 14 1 0 258 chain 29019 chrX 155270560 + 13192893 13193299 MSTC 436 - 12 436 88908 132 4 6 94 4 3 56 9 25 6 0 1 101 chain 26480 chrX 155270560 + 13194401 13194755 THE1A 353 + 0 353 98121 109 6 5 88 1 0 111 2 3 37 chain 420287 chrX 155270560 + 13200057 13205239 L1PA8 5853 + 50 5824 9526 22 2 0 8 46 0 9 10 19 197 0 4 292 0 4 549 7 6 99 0 1 258 21 5 495 3 0 140 2 0 691 0 1 38 1 0 180 67 711 231 1 0 44 0 8 948 2 0 219 0 1 334 2 1 43 2 0 71 1 0 61 2 1 19 1 0 64 chain 10608 chrX 155270560 + 13207390 13207534 L1PA7 6471 + 6326 6470 157790 34 5 6 92 1 0 12 chain 63885 chrX 155270560 + 13216653 13217549 MER4D1 891 + 0 883 51060 27 1 2 19 9 10 54 16 14 101 1 0 42 1 0 275 10 10 113 1 0 65 11 1 150 chain 72444 chrX 155270560 + 13227773 13228789 L1PA6 6164 + 5288 6162 47288 125 0 2 125 153 8 19 0 1 594 chain 21701 chrX 155270560 + 13252052 13252395 THE1D 372 - 11 372 121383 17 1 4 20 0 2 108 41 44 91 9 19 56 chain 4481 chrX 155270560 + 13256215 13256348 MER5A1 166 + 0 136 201014 19 4 5 8 6 0 8 47 55 41 chain 20586 chrX 155270560 + 13321425 13321723 THE1B 368 - 70 368 125345 45 31 29 6 0 4 14 1 0 31 1 0 169 chain 4801 chrX 155270560 + 13325758 13325827 L1PB1 5432 - 10 75 197348 18 2 0 13 1 0 21 1 0 13 chain 49044 chrX 155270560 + 13349735 13350291 L1PA7 6471 - 12 568 59715 556 chain 3949 chrX 155270560 + 13366344 13366419 L1ME1 1623 + 1415 1484 208143 16 20 14 39 chain 32287 chrX 155270560 + 13398715 13399231 MER4B 649 - 72 649 80385 121 39 34 63 0 15 94 0 1 16 12 34 29 2 30 19 3 5 8 1 0 84 1 0 24 chain 35346 chrX 155270560 + 13401167 13401737 LTR49 580 - 0 574 75739 95 0 1 14 54 48 43 17 29 67 11 10 103 8 7 28 1 0 22 1 0 37 0 1 69 chain 5752 chrX 155270560 + 13402405 13402474 MER20 218 - 149 218 187618 69 chain 28858 chrX 155270560 + 13404084 13404430 MER41B 635 - 288 635 89634 218 1 2 127 chain 26265 chrX 155270560 + 13414239 13414593 THE1A 353 - 0 353 98958 155 1 0 39 12 13 37 1 0 109 chain 10843 chrX 155270560 + 13414593 13414722 MER51B 395 - 266 395 156816 129 chain 363214 chrX 155270560 + 13422715 13427242 L1PA8 5853 + 50 5853 11283 21 2 0 11 1 0 13 34 13 54 10 10 130 36 24 97 0 3 173 0 4 42 0 6 6 1 0 516 0 324 394 0 1 13 0 2 118 1 0 852 6 5 83 0 2 398 0 1 229 0 2 273 4 5 102 0 995 12 0 4 21 2 0 555 1 0 45 2 0 50 21 0 19 12 10 51 3 2 19 2 1 92 chain 36965 chrX 155270560 + 13432085 13432605 MER41A 554 - 0 554 73563 16 6 5 106 1 0 184 12 19 75 1 2 56 8 36 55 chain 3440 chrX 155270560 + 13450036 13450077 MER33 330 + 191 232 216376 41 chain 20361 chrX 155270560 + 13459727 13460067 THE1C 375 - 0 375 126030 26 1 0 98 25 54 10 0 1 7 0 2 23 16 0 9 16 36 109 chain 4104 chrX 155270560 + 13468795 13468844 MER5A 189 - 139 188 205883 49 chain 12476 chrX 155270560 + 13483447 13483616 THE1D 372 + 0 185 150357 124 11 27 34 chain 42766 chrX 155270560 + 13498766 13499262 L1PA7 6471 - 16 512 65695 496 chain 20861 chrX 155270560 + 13499262 13499516 L1PA7 6471 + 5658 5914 124424 40 0 2 214 chain 71911 chrX 155270560 + 13521698 13522683 L1MA2 4263 - 146 1117 47517 13 1 0 43 12 5 90 1 0 9 2 1 146 4 1 95 5 10 42 1 0 79 2 0 9 3 0 428 chain 6409 chrX 155270560 + 13535180 13535271 MER58A 224 + 57 147 181954 62 4 3 25 chain 203566 chrX 155270560 + 13544739 13547019 L1PA4 6152 - 1 2287 18956 767 1 0 83 1 0 223 0 6 180 0 1 644 0 1 381 chain 3689 chrX 155270560 + 13554444 13554484 MER3 215 + 174 214 212095 40 chain 34948 chrX 155270560 + 13559827 13560411 L1PB1 5432 + 4846 5404 76268 41 0 1 72 1 0 128 0 1 5 0 4 5 1 2 9 1 0 24 37 29 53 3 2 14 1 0 44 1 0 16 3 0 6 16 6 19 7 4 15 2 0 24 1 0 21 1 0 13 chain 8534 chrX 155270560 + 13576573 13576701 HSMAR2 1300 - 1071 1226 168111 38 1 26 72 5 7 12 chain 23769 chrX 155270560 + 13579646 13579929 AluY 311 + 22 300 111652 101 2 0 8 3 0 169 chain 26011 chrX 155270560 + 13594188 13594570 MSTA 426 - 12 398 99973 96 2 16 6 6 0 82 9 13 11 8 0 162 chain 63996 chrX 155270560 + 13596339 13597054 L1PA4 6152 + 5432 6152 51008 606 0 1 57 0 4 52 chain 18563 chrX 155270560 + 13614354 13614590 7SK 245 + 0 239 131324 194 1 4 41 chain 61064 chrX 155270560 + 13630162 13630829 SVA_B 1603 - 0 662 52304 6 3 0 607 1 0 14 1 0 35 chain 19099 chrX 155270560 + 13634978 13635177 AluYb8 318 - 9 208 129819 199 chain 4996 chrX 155270560 + 13644237 13644301 MER53 195 - 131 195 195180 64 chain 80569 chrX 155270560 + 13655030 13656045 MER11A 1151 - 0 1144 43361 36 0 4 22 1 4 10 1 7 206 16 23 146 9 8 380 0 11 116 0 99 72 chain 132245 chrX 155270560 + 13659300 13660754 L1PA4 6152 + 4687 6141 27579 1454 chain 3915 chrX 155270560 + 13675957 13676210 L1MB7 1623 + 1375 1580 208619 45 179 136 8 5 0 16 chain 98519 chrX 155270560 + 13692135 13693210 L1PA3long 6157 - 5 1080 37150 1075 chain 174649 chrX 155270560 + 13696331 13698339 L1PA5 6144 + 4130 6143 21521 845 0 1 93 0 6 907 5 0 6 4 0 5 0 9 130 3 1 10 chain 63090 chrX 155270560 + 13700897 13701588 L1PA3long 6157 + 5462 6153 51406 691 chain 20512 chrX 155270560 + 13731654 13731944 AluSg 306 + 0 293 125590 20 2 0 19 12 18 199 8 7 30 chain 3965 chrX 155270560 + 13740023 13740074 MER58A 224 + 164 215 207916 51 chain 524987 chrX 155270560 + 13742749 13749195 L1PA6 6164 + 0 6162 4687 158 5 0 4 0 5 290 0 1 60 0 2 47 1 0 52 0 2 5 6 4 157 0 17 924 1 0 12 0 1 112 0 4 201 1 0 268 1 2 231 1 0 19 0 4 14 0 3 162 0 2 408 8 9 1182 0 4 217 1 0 434 322 0 300 0 3 84 4 6 737 1 0 6 1 0 9 chain 36352 chrX 155270560 + 13759693 13760135 LTR7C 471 - 6 471 74427 27 0 1 254 0 1 54 0 4 14 0 3 9 4 18 80 chain 43532 chrX 155270560 + 13799429 13800033 MER4A1_ 611 + 14 611 64769 66 3 7 26 0 1 8 0 4 61 1 5 18 3 0 62 1 2 20 17 0 108 1 0 209 chain 3977 chrX 155270560 + 13872678 13872723 L1MA5A 2387 + 2251 2296 207733 45 chain 33753 chrX 155270560 + 13878774 13879603 L1PB1 5432 - 10 631 78018 18 1 0 13 1 0 21 1 0 20 6 4 14 1 0 5 3 1 17 19 9 4 1 0 10 6 5 44 7 6 9 3 2 52 2 0 9 6 2 10 6 5 7 1 0 12 0 3 5 202 17 106 14 16 77 1 2 58 0 1 37 chain 44436 chrX 155270560 + 13908106 13908632 MER41A 554 + 0 554 63652 377 4 32 145 chain 4419 chrX 155270560 + 13910514 13910565 MADE1 96 + 45 96 201697 51 chain 21586 chrX 155270560 + 13944273 13944556 AluY 311 + 33 301 121823 90 8 4 135 2 0 27 9 0 12 chain 9269 chrX 155270560 + 13947779 13947955 MER20 218 + 44 218 164222 36 37 42 36 8 0 4 0 1 55 chain 4707 chrX 155270560 + 13951624 13951676 Tigger13a 716 + 176 228 198420 52 chain 4130 chrX 155270560 + 13957320 13957387 MER5B 177 + 95 163 205498 24 9 10 34 chain 109641 chrX 155270560 + 13963649 13964870 L1PA5 6144 + 4909 6129 34291 1122 1 0 98 chain 16485 chrX 155270560 + 13974652 13974877 L1PREC2 3366 - 1896 2131 136970 49 5 6 76 0 6 23 0 3 72 chain 138892 chrX 155270560 + 13990161 13991747 L1PA5 6144 - 4 1592 26331 149 8 10 1429 chain 218635 chrX 155270560 + 13994602 13997043 L1P1 4361 + 1788 4230 17963 748 2 1 621 2 1 349 1 2 88 0 1 30 0 2 520 1 0 79 chain 95927 chrX 155270560 + 14000054 14001430 MER57-int 2662 + 1225 2625 37841 50 0 1 367 9 11 244 0 1 6 3 4 32 0 3 46 0 45 19 0 7 231 0 1 39 2 0 10 7 4 73 25 19 66 28 14 25 2 0 6 1 0 9 4 1 24 1 0 6 16 11 25 chain 24574 chrX 155270560 + 14001809 14002107 MER57A1 433 + 0 300 107114 282 0 2 16 chain 14224 chrX 155270560 + 14012970 14013142 MLT2A2 560 - 0 172 143810 172 chain 24265 chrX 155270560 + 14039245 14039513 L1PA4 6152 + 5872 6140 108873 268 chain 171512 chrX 155270560 + 14052439 14054896 L1MA2 4263 + 712 4104 21882 132 1 0 73 0 2 52 6 5 128 6 11 110 0 655 83 23 6 74 11 12 46 0 11 114 4 287 8 2 0 12 0 2 5 0 1 12 0 4 56 0 1 30 1 0 4 8 11 122 1 6 180 12 10 101 0 6 148 7 5 271 13 6 60 2 0 10 9 4 74 1 0 140 3 0 55 0 1 98 11 9 92 14 7 11 2 1 8 0 9 11 chain 39905 chrX 155270560 + 14065711 14066490 L1MA6 2487 - 85 787 69449 4 1 0 21 3 0 29 109 58 14 2 0 34 31 15 151 2 0 8 2 1 64 7 6 70 1 0 65 12 10 22 1 0 92 1 5 33 chain 3666 chrX 155270560 + 14073872 14073911 L1MA6 2487 - 108 147 212452 39 chain 79341 chrX 155270560 + 14103259 14104106 L1PA2 6032 - 8 855 43889 847 chain 41969 chrX 155270560 + 14104106 14104567 L1PA2 6032 + 4751 5213 66659 427 0 1 34 chain 18266 chrX 155270560 + 14115341 14115537 L1PA7 6471 - 30 226 132163 196 chain 548274 chrX 155270560 + 14122072 14128093 L1PA3long 6157 - 5 6157 1666 333 0 1 40 0 1 4873 0 128 623 0 1 152 chain 8966 chrX 155270560 + 14159691 14159791 L1PA3long 6157 - 202 302 165790 100 chain 17906 chrX 155270560 + 14159791 14159993 L1PA3long 6157 + 5954 6157 133087 48 0 1 154 chain 71743 chrX 155270560 + 14168648 14169540 L1PA8A 6298 - 8 907 47592 99 11 8 14 3 4 484 13 15 175 0 3 15 0 4 78 chain 62357 chrX 155270560 + 14174356 14175072 L1PA4 6152 - 794 1517 51663 204 0 5 481 0 2 31 chain 69915 chrX 155270560 + 14175072 14175855 L1PA4 6152 + 5362 6143 48424 729 2 0 52 chain 52564 chrX 155270560 + 14178822 14179446 L1PA7 6471 - 12 635 57259 145 1 0 478 chain 17861 chrX 155270560 + 14201845 14202166 L1PA13 3608 + 3256 3548 133213 17 2 0 62 1 0 51 1 0 10 2 0 47 2 0 5 2 0 18 1 0 22 26 18 12 1 0 6 7 1 10 4 1 12 chain 293272 chrX 155270560 + 14207173 14211200 L1PA10 4194 - 33 3859 13806 11 1 0 32 5 2 28 3 6 222 1 0 206 16 21 146 0 1 223 0 1 122 20 9 356 0 1 40 0 1 69 5 0 7 1 2 43 8 6 45 1 0 121 135 0 450 0 2 89 2 0 691 50 9 709 4 2 79 22 14 15 1 0 10 1 0 7 1 0 10 1 0 18 chain 21849 chrX 155270560 + 14213673 14214020 THE1D 372 + 0 355 120822 165 61 69 121 chain 19179 chrX 155270560 + 14215881 14216136 L1PA5 6144 - 4 257 129585 109 1 0 40 21 20 84 chain 44144 chrX 155270560 + 14216146 14216637 L1PA4 6152 - 1 492 64021 491 chain 42765 chrX 155270560 + 14218094 14218562 L1PA3long 6157 - 0 468 65704 468 chain 12818 chrX 155270560 + 14218609 14218785 L1PA15-16 3068 - 2430 2603 148987 7 3 0 166 chain 508091 chrX 155270560 + 14218824 14225113 L1PA5 6144 - 0 6141 6311 64 0 10 282 0 1 674 0 1 823 0 1 420 1 0 784 0 1 62 2 0 23 1 3 612 0 4 65 2 1 744 0 1 277 351 132 336 0 17 67 3 2 6 0 1 5 1 0 56 0 12 381 1 2 106 4 16 14 7 20 115 chain 27338 chrX 155270560 + 14223675 14224010 L1P2 5180 + 724 1102 95148 59 0 15 129 0 25 132 0 3 15 chain 29153 chrX 155270560 + 14268081 14268400 AluYb8 318 - 0 317 88299 255 2 0 62 chain 2678 chrX 155270560 + 14271176 14271245 MER5A 189 - 82 153 230452 12 19 20 24 1 2 13 chain 281550 chrX 155270560 + 14277392 14283505 L1PA7 6471 - 16 3637 14561 244 0 1 500 1 0 96 1 0 384 2768 302 1431 1 0 69 24 0 594 chain 15002 chrX 155270560 + 14286028 14286215 L1PB1 5432 - 344 530 141313 37 1 0 149 chain 18776 chrX 155270560 + 14286229 14286579 L1PB1 5432 + 5106 5422 130754 8 3 0 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 7 6 11 1 0 44 1 0 15 1 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 19248 chrX 155270560 + 14298515 14298856 L1PA15 4387 - 21 344 129381 10 1 0 27 5 0 2 0 1 10 2 0 46 6 3 50 14 9 23 1 0 43 12 11 26 2 1 61 chain 272872 chrX 155270560 + 14304730 14307747 L1PA3long 6157 - 0 3017 15025 6 2 0 373 0 1 1815 0 2 782 2 1 37 chain 123080 chrX 155270560 + 14320234 14321591 SVA_C 1631 - 20 1590 30017 581 0 175 131 2 40 643 chain 23416 chrX 155270560 + 14327011 14327360 L1PA8 5853 - 0 342 113560 47 4 3 43 1 0 19 2 1 61 2 1 70 2 0 44 1 0 42 1 0 6 0 1 4 chain 3496 chrX 155270560 + 14339965 14340015 MER58B 340 + 292 340 215428 34 2 0 14 chain 17955 chrX 155270560 + 14360322 14360530 L1PA6 6164 - 4 212 132969 208 chain 24147 chrX 155270560 + 14361538 14361855 THE1B 368 + 0 333 109487 25 1 0 4 1 2 13 0 15 110 1 0 29 0 2 133 chain 38633 chrX 155270560 + 14364133 14364566 L1PA5 6144 - 3 434 71246 145 2 0 286 chain 38791 chrX 155270560 + 14377700 14378285 LTR9 672 + 1 572 71027 268 23 16 57 17 16 142 34 28 44 chain 462952 chrX 155270560 + 14387817 14393352 L1PA7 6471 + 787 6461 8292 115 21 36 139 0 1 379 0 7 532 0 18 123 1 0 128 1 0 373 1 2 125 6 0 56 0 1 353 6 105 259 0 1 387 1 0 4 0 1 1023 2 6 164 5 0 422 0 1 66 2 0 13 0 1 41 0 3 137 0 5 167 0 1 402 0 1 8 13 8 60 chain 440686 chrX 155270560 + 14409954 14414963 L1PA5 6144 + 0 6138 9036 51 0 1 37 0 996 413 2 0 1500 0 1 1837 5 10 4 1 0 57 6 130 254 0 4 701 0 1 141 chain 3420 chrX 155270560 + 14427251 14427310 L1MA4 2864 - 61 118 216760 30 8 6 21 chain 20588 chrX 155270560 + 14436249 14436493 L1PA5 6144 - 3 241 125341 6 4 0 146 3 1 85 chain 3662 chrX 155270560 + 14454072 14454112 MER5A1 166 - 33 73 212545 40 chain 56534 chrX 155270560 + 14475336 14476000 L1PA7 6471 - 12 678 54832 77 0 1 73 0 1 514 chain 468657 chrX 155270560 + 14476000 14482110 L1PA4 6152 - 3 6128 8083 145 1 4 1712 0 2 273 1 0 166 0 1 328 4 5 66 6 19 166 0 2 83 2 0 346 0 6 45 3 7 178 1 2 327 13 13 242 2 3 298 3 0 30 0 4 248 6 1 6 0 5 140 6 10 79 24 15 213 25 0 124 0 17 109 0 1 92 52 51 33 1 2 59 19 0 250 1 0 23 0 1 31 32 46 96 chain 38013 chrX 155270560 + 14482976 14483605 L1MA5A 2387 - 1336 2010 72114 32 1 0 43 3 4 109 25 19 55 1 4 13 8 17 55 1 41 54 10 12 5 2 0 96 19 18 29 0 1 6 1 0 61 chain 63891 chrX 155270560 + 14486778 14487476 L1PA3long 6157 - 490 1188 51056 698 chain 45146 chrX 155270560 + 14487476 14487973 L1PA3long 6157 + 5657 6153 62873 23 1 0 473 chain 33233 chrX 155270560 + 14501832 14502293 MLT2A1 477 + 0 469 78826 168 5 2 9 0 1 24 0 1 135 0 1 42 12 1 14 11 0 9 3 33 29 chain 156675 chrX 155270560 + 14530340 14532509 L1PB1 5432 + 3261 5422 23776 467 0 9 207 0 3 6 0 1 4 15 9 191 9 13 44 1 0 4 8 4 281 3 7 116 3 0 356 2 1 110 6 11 9 5 0 17 4 13 12 2 0 3 2 0 9 3 1 51 2 1 15 1 0 45 1 0 15 1 0 4 2 0 13 9 0 14 7 5 14 2 0 18 0 1 5 1 0 18 2 5 11 1 0 18 chain 25289 chrX 155270560 + 14535447 14535821 THE1C 375 - 0 375 103276 167 11 8 19 0 1 41 34 37 102 chain 11244 chrX 155270560 + 14542005 14542145 Tigger1 2417 - 526 666 155245 140 chain 3271 chrX 155270560 + 14542300 14542336 MLT2B3 573 + 524 560 219589 36 chain 4957 chrX 155270560 + 14579543 14579605 MER58A 224 + 45 108 195623 4 0 1 58 chain 36265 chrX 155270560 + 14600200 14600624 L1PA3long 6157 - 8 434 74544 130 0 7 9 7 2 278 chain 26235 chrX 155270560 + 14601186 14601577 L1PA15 4387 + 3911 4291 99078 21 1 0 172 2 1 10 5 10 5 1 0 55 1 0 22 8 0 10 1 0 50 6 3 21 chain 81131 chrX 155270560 + 14606328 14607466 L1PA16 3655 - 1010 2168 43119 134 10 9 15 5 8 9 0 9 13 0 4 211 3 0 91 10 14 69 0 3 186 0 1 53 30 29 141 0 1 158 chain 43515 chrX 155270560 + 14609284 14609854 MLT2A2 560 - 0 560 64791 35 22 16 27 4 0 197 0 1 74 5 6 54 2 0 150 chain 65126 chrX 155270560 + 14620590 14621529 L1PB1 5432 - 28 934 50516 13 2 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 15 1 0 45 1 0 14 6 5 49 2 0 9 5 1 11 1 0 9 1 0 21 5 0 7 4 7 87 0 2 149 0 8 51 8 2 178 3 0 128 chain 23236 chrX 155270560 + 14621539 14621821 L1PB1 5432 + 4194 4476 114515 17 1 0 4 0 1 169 1 0 75 4 5 11 chain 70514 chrX 155270560 + 14630258 14631098 L1PA7 6471 + 5621 6461 48156 32 0 1 661 1 0 146 chain 372255 chrX 155270560 + 14639490 14643819 L1PA5 6144 - 1 4350 11017 10 1 3 133 2 1 12 0 1 297 0 2 247 0 1 142 1 0 265 0 9 386 0 5 754 0 1 386 1 5 80 11 7 229 1 0 44 1 0 108 0 1 282 0 1 307 0 3 513 2 0 114 chain 21239 chrX 155270560 + 14672845 14673209 THE1B 368 - 0 368 123057 56 7 6 56 69 73 60 5 6 111 chain 118158 chrX 155270560 + 14686964 14688531 THE1B-int 1605 - 5 1605 31747 13 1 2 574 1 0 5 0 1 107 0 6 164 47 40 117 1 3 101 0 2 11 1 26 312 0 3 98 0 1 14 chain 26579 chrX 155270560 + 14688531 14688884 THE1B 368 - 0 368 97729 169 0 1 23 4 3 108 5 20 44 chain 6422 chrX 155270560 + 14699190 14699266 L1PA5 6144 - 12 88 181840 76 chain 537098 chrX 155270560 + 14700674 14707064 L1PA5 6144 - 0 6144 3300 843 0 4 240 0 1 164 269 0 303 1 0 240 0 2 1103 0 4 228 0 1 296 4 2 400 1 0 276 0 12 870 1 4 1151 chain 7864 chrX 155270560 + 14701943 14702029 L1PA3long 6157 + 6071 6157 171913 86 chain 7350 chrX 155270560 + 14711088 14711166 L1PA3long 6157 + 6071 6149 175096 78 chain 4740 chrX 155270560 + 14723414 14723578 MER20 218 + 0 153 198013 18 15 12 29 70 62 32 chain 4795 chrX 155270560 + 14739374 14739510 L1MA7 2200 + 2049 2170 197410 39 2 0 17 50 38 17 1 0 10 chain 369766 chrX 155270560 + 14750010 14754813 L1PA7 6471 - 4 6465 11104 153 1 0 356 0 1 257 0 2 81 0 3 304 0 5 84 0 4 400 0 4 389 411 2058 593 10 5 213 1 0 683 0 1 468 2 0 397 chain 117524 chrX 155270560 + 14776417 14778013 L1PBa 3878 + 100 1702 31955 33 19 18 6 3 0 6 1 0 50 0 1 6 11 9 8 2 0 261 2 0 26 1 0 222 15 17 8 0 2 28 4 8 646 0 12 147 2 0 8 5 4 76 chain 23969 chrX 155270560 + 14778013 14778289 L1P2 5180 + 1875 2151 110007 276 chain 350112 chrX 155270560 + 14785325 14789942 L1PA11 4918 - 289 4912 11601 18 47 33 11 2 0 13 1 0 15 44 31 20 1 0 16 2 0 28 2 1 36 2 0 13 2 1 51 9 11 397 5 9 149 0 3 41 0 18 724 0 2 280 3 0 261 0 1 19 0 4 214 0 1 6 0 1 105 9 12 238 22 33 83 1 0 298 0 5 78 1 0 33 0 1 32 1 3 278 0 1 361 0 1 420 9 6 33 2 1 51 2 0 10 4 3 27 4 2 6 1 0 38 2 0 36 chain 13496 chrX 155270560 + 14797488 14797819 MLT1A1 405 + 0 391 146367 17 23 38 78 91 133 19 5 7 26 2 0 62 0 3 8 chain 77395 chrX 155270560 + 14821895 14822758 L1PA4 6152 + 5280 6143 44783 863 chain 493310 chrX 155270560 + 14827321 14833451 L1PA6 6164 + 2 6162 7210 132 26 12 50 0 1 312 2 1 48 1 0 118 7 0 98 25 42 122 1 26 87 1 0 4 8 9 111 123 132 1024 0 1 205 1 4 648 0 1 1155 7 0 50 2 0 474 0 1 420 0 5 210 0 1 648 2 0 8 chain 36909 chrX 155270560 + 14833568 14834100 L1PB4 2604 + 1998 2553 73646 32 0 20 20 1 0 210 7 9 48 11 15 20 7 5 176 chain 4196 chrX 155270560 + 14834708 14834764 MER20 218 - 62 117 204595 23 1 0 32 chain 81093 chrX 155270560 + 14866252 14867151 MER11D 897 + 0 897 43145 595 2 0 302 chain 4731 chrX 155270560 + 14897709 14897773 Charlie1b 519 + 456 519 198163 33 1 0 30 chain 23005 chrX 155270560 + 14899944 14900209 L1PA5 6144 + 5794 6059 115598 265 chain 27396 chrX 155270560 + 14906394 14906759 THE1B 368 + 0 368 94984 168 1 0 138 6 14 29 4 0 19 chain 3827 chrX 155270560 + 14906765 14906817 MLT2A2 560 + 506 560 209977 7 0 2 45 chain 2802 chrX 155270560 + 14923425 14923468 L1MB7 1623 + 240 285 228699 16 2 4 25 chain 3910 chrX 155270560 + 14923913 14923959 MER2 342 - 120 166 208700 46 chain 12030 chrX 155270560 + 14933555 14933685 L1PA4 6152 + 6022 6152 152071 130 chain 7901 chrX 155270560 + 14963836 14963933 BC200 147 - 33 130 171646 97 chain 3571 chrX 155270560 + 14967453 14967495 MER21C 908 - 127 169 214121 42 chain 122751 chrX 155270560 + 14972693 14974259 THE1B-int 1605 - 8 1605 30136 162 0 1 406 2 0 7 10 13 268 1 4 280 1 26 228 0 1 4 1 0 31 0 1 129 3 6 5 3 0 25 chain 23127 chrX 155270560 + 14974259 14974611 THE1B 368 - 0 366 115014 64 1 0 61 35 45 30 2 1 89 0 1 35 0 5 7 0 2 15 2 0 11 chain 170219 chrX 155270560 + 14984112 14986454 L1PA7 6471 - 5 2047 22023 7 3 0 145 0 2 180 1 2 172 0 1 254 2 0 18 316 0 57 0 5 637 7 21 10 2 0 531 chain 529926 chrX 155270560 + 14987123 14993244 L1PA5 6144 - 2 6144 4196 142 6 12 82 2 0 2409 0 1 51 0 2 273 0 1 435 0 1 329 0 1 93 8 0 130 0 6 949 0 2 54 9 0 135 1 0 4 1 2 806 0 6 80 1 15 121 chain 8491 chrX 155270560 + 15007241 15007596 MLT1C 463 + 64 439 168343 20 54 58 22 12 0 6 1 2 15 137 163 58 1 2 29 chain 3062 chrX 155270560 + 15013137 15013171 L1MD3 1191 - 314 348 223775 34 chain 29411 chrX 155270560 + 15017129 15017456 L1PA3long 6157 - 0 327 87013 327 chain 102024 chrX 155270560 + 15017456 15018566 L1PA3long 6157 + 4709 5818 36255 598 1 0 511 chain 33045 chrX 155270560 + 15020639 15021022 L1PA5 6144 + 5750 6137 79146 123 0 1 60 3 6 197 chain 14189 chrX 155270560 + 15040556 15040742 HERVL-int 5654 - 2484 2678 143923 112 15 23 59 chain 145980 chrX 155270560 + 15047638 15049230 L1PA3long 6157 + 4564 6156 25172 1592 chain 25149 chrX 155270560 + 15058630 15058982 THE1C 375 - 0 355 104004 25 1 0 137 18 9 7 0 12 142 1 2 21 chain 3031 chrX 155270560 + 15059079 15059114 L1MB5 1630 - 83 118 224357 35 chain 41493 chrX 155270560 + 15065209 15065666 L1PA3long 6157 - 0 455 67289 259 2 0 196 chain 4431 chrX 155270560 + 15067792 15067877 MER50C 576 + 0 80 201576 15 12 10 36 3 0 19 chain 3462 chrX 155270560 + 15070198 15070236 MLT1A0 366 - 58 96 215970 38 chain 20334 chrX 155270560 + 15074440 15074668 L1PA6 6164 + 5219 5450 126121 96 0 3 132 chain 61856 chrX 155270560 + 15074678 15075386 L1PA6 6164 + 5450 6162 51972 628 0 4 80 chain 19568 chrX 155270560 + 15084945 15085205 L1PA10 4194 + 3909 4167 128467 173 0 2 32 3 0 30 8 7 14 chain 27092 chrX 155270560 + 15096410 15096751 THE1A 353 + 13 353 95965 34 0 1 46 1 0 200 1 0 59 chain 25193 chrX 155270560 + 15101502 15101823 THE1A 353 + 33 353 103781 14 0 1 48 1 0 196 1 0 61 chain 124587 chrX 155270560 + 15101823 15103400 THE1A-int 1579 + 0 1573 29510 438 0 2 132 16 16 25 9 0 41 0 3 916 chain 551717 chrX 155270560 + 15106543 15112680 L1PA4 6152 + 0 6151 1219 29 0 13 486 4 0 4526 0 5 1092 chain 26169 chrX 155270560 + 15119101 15119387 L1PA3long 6157 - 5 291 99329 286 chain 24538 chrX 155270560 + 15121888 15122177 L1PA7 6471 + 6175 6461 107321 127 1 0 13 2 0 146 chain 25461 chrX 155270560 + 15134203 15134545 L1PA16 3655 + 3238 3578 102410 44 20 18 278 chain 51764 chrX 155270560 + 15153006 15154189 L1PB1 5432 + 4640 5418 57779 157 0 1 14 311 3 288 73 11 24 1 0 9 1 0 9 6 2 11 2 0 51 2 1 14 6 5 41 1 0 15 4 0 6 16 6 19 3 1 4 1 0 7 4 1 6 2 0 24 1 0 21 1 0 13 1 0 14 chain 49197 chrX 155270560 + 15202124 15202957 L1PB3 3668 - 991 1834 59601 12 1 0 158 164 189 202 12 0 59 12 10 213 chain 23243 chrX 155270560 + 15214695 15214962 L1PA4 6152 - 0 262 114473 146 5 0 116 chain 71597 chrX 155270560 + 15217157 15218102 THE1B-int 1605 - 0 954 47659 225 0 3 23 1 0 5 12 13 185 5 9 378 0 9 7 13 5 58 3 4 30 chain 46640 chrX 155270560 + 15218102 15218641 HERVL-int 5654 - 2431 2971 61505 392 0 1 147 chain 9199 chrX 155270560 + 15218693 15218801 THE1B 368 - 260 368 164560 108 chain 5626 chrX 155270560 + 15221876 15221948 MER20 218 + 124 194 188816 40 2 0 30 chain 134182 chrX 155270560 + 15248872 15250417 LTR12C 1709 - 0 1709 27168 481 0 4 114 0 1 113 0 159 837 chain 29058 chrX 155270560 + 15254791 15255174 L1MA3 4352 - 421 805 88724 23 1 3 170 2 1 187 chain 3221 chrX 155270560 + 15274564 15274602 MER58D 378 + 326 364 220567 38 chain 5765 chrX 155270560 + 15276683 15276789 Charlie4a 502 + 87 195 187491 60 22 24 24 chain 48263 chrX 155270560 + 15291306 15292019 LTR12 884 + 0 752 60270 24 1 0 50 25 0 12 0 1 179 0 3 29 1 5 43 41 0 32 2 0 66 4 1 102 0 103 102 chain 3318 chrX 155270560 + 15291670 15291711 LTR12 884 + 280 321 157133 41 chain 4787 chrX 155270560 + 15297925 15297995 MER33 330 - 69 138 197491 23 4 3 43 chain 20338 chrX 155270560 + 15298748 15299026 L1MA5 2750 + 2125 2405 126113 20 2 0 120 11 14 104 0 1 21 chain 16197 chrX 155270560 + 15311971 15312157 L1PA5 6144 + 5947 6144 137763 71 0 11 115 chain 32028 chrX 155270560 + 15327336 15327754 MER1A 529 + 97 529 80821 90 8 20 46 0 2 274 chain 5613 chrX 155270560 + 15336810 15336887 MER30 238 - 0 80 188946 35 4 7 38 chain 28385 chrX 155270560 + 15369228 15369540 AluYa5 310 - 2 310 91641 176 4 0 132 chain 4232 chrX 155270560 + 15375873 15375970 MIRb 242 + 32 128 204137 29 35 34 33 chain 22319 chrX 155270560 + 15377512 15377797 L1PA8 5853 - 0 279 118830 93 1 0 16 1 0 54 1 0 11 1 0 71 2 0 34 chain 3847 chrX 155270560 + 15388805 15388861 MER5A1 166 - 3 66 209686 8 1 0 4 0 1 12 0 7 31 chain 11013 chrX 155270560 + 15405950 15406084 MER5A1 166 - 21 155 156152 134 chain 12761 chrX 155270560 + 15416220 15416365 L1PA5 6144 + 5985 6130 149203 145 chain 8074 chrX 155270560 + 15433626 15433861 L1MA8 2339 + 2133 2339 170619 28 5 2 33 6 0 31 20 18 11 1 0 8 54 37 38 chain 17957 chrX 155270560 + 15463449 15463670 L1PA6 6164 + 5946 6162 132964 210 5 0 6 chain 11908 chrX 155270560 + 15464494 15464685 MER30 238 - 0 204 152565 13 6 9 78 5 0 10 8 23 71 chain 27669 chrX 155270560 + 15492160 15492585 MER57A1 433 - 0 433 94154 13 0 1 31 40 34 66 1 2 57 9 10 9 0 11 199 chain 17407 chrX 155270560 + 15517195 15517561 THE1B 368 - 0 368 134483 25 15 16 15 7 6 63 48 53 21 1 0 33 36 34 102 chain 28440 chrX 155270560 + 15533085 15533440 L1PA8 5853 + 5505 5853 91419 59 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 3595 chrX 155270560 + 15542512 15542553 L1MB2 1706 - 29 70 213733 41 chain 68343 chrX 155270560 + 15557905 15558705 L1PA7 6471 + 5663 6470 49105 171 2 0 486 1 2 43 0 8 97 chain 44195 chrX 155270560 + 15575074 15575721 LTR70 1284 - 9 659 63953 39 1 0 43 1 0 37 7 4 189 7 8 17 19 23 48 3 4 72 0 3 150 1 0 13 chain 6526 chrX 155270560 + 15575761 15575838 LTR70 1284 + 151 228 181046 77 chain 25457 chrX 155270560 + 15600299 15600654 L1MA2 4263 + 3732 4075 102425 76 3 0 148 11 9 89 11 4 17 chain 43203 chrX 155270560 + 15624989 15625515 LTR10C 591 + 0 523 65165 138 3 1 65 1 0 319 chain 106469 chrX 155270560 + 15626866 15628516 L1PA8 5853 + 4514 5839 35129 270 0 1 4 4 3 57 323 0 138 0 4 19 2 0 74 0 2 151 0 1 326 1 0 44 2 0 70 6 5 8 1 0 49 2 1 19 1 0 79 chain 36423 chrX 155270560 + 15642788 15643196 L1PA4 6152 + 5745 6152 74333 251 0 1 150 2 0 5 chain 25911 chrX 155270560 + 15652779 15653068 L1PA2 6032 + 5742 6027 100366 279 4 0 6 chain 3226 chrX 155270560 + 15662635 15662671 LTR37A 408 + 359 395 220495 36 chain 4075 chrX 155270560 + 15688854 15688900 MER20 218 + 93 139 206265 46 chain 81244 chrX 155270560 + 15745604 15747092 L1PA15 4387 - 21 1310 43066 9 1 0 28 5 0 14 3 1 44 6 3 50 2 1 9 10 6 16 1 0 51 198 30 31 0 5 35 16 18 83 1 0 37 8 5 57 2 0 4 4 0 16 2 0 110 0 1 135 1 2 15 1 2 122 33 19 32 11 14 193 2 1 90 chain 21819 chrX 155270560 + 15759611 15759898 AluSg7 307 - 18 307 120950 120 0 10 27 0 1 15 12 3 113 chain 4426 chrX 155270560 + 15770107 15770290 MER4D 903 - 8 204 69732 14 0 2 111 0 10 24 0 1 34 chain 59774 chrX 155270560 + 15770290 15771353 MER4E1 777 + 0 773 52944 25 2 0 243 301 0 61 0 19 85 0 1 106 7 0 233 chain 9167 chrX 155270560 + 15771370 15771749 MER4D 903 - 213 602 69732 17 7 9 17 5 1 207 0 12 126 chain 3111 chrX 155270560 + 15796653 15796688 MLT2B1 522 - 13 48 222740 35 chain 3366 chrX 155270560 + 15802760 15802796 L1MB2 1706 + 1649 1685 217735 36 chain 10592 chrX 155270560 + 15847858 15848051 L1MB2 1706 + 1514 1686 157860 63 14 2 7 3 0 12 1 0 10 5 4 50 4 0 24 chain 111793 chrX 155270560 + 15877936 15879160 L1PA5 6144 - 12 1237 33725 135 0 1 1089 chain 27615 chrX 155270560 + 15896262 15897007 THE1C 375 - 0 375 94310 25 1 0 136 368 1 28 1 0 4 1 3 53 3 0 125 chain 15469 chrX 155270560 + 15900605 15900823 MER41B 635 - 55 272 139993 112 19 18 87 chain 13296 chrX 155270560 + 15901688 15902049 LTR29 598 + 144 520 147097 89 22 48 81 147 136 22 chain 37109 chrX 155270560 + 15914363 15914777 L1PA5 6144 - 1 415 73367 414 chain 8294 chrX 155270560 + 15914873 15914989 MER85 139 - 0 127 169432 22 1 0 7 2 14 84 chain 14337 chrX 155270560 + 15916500 15916907 L1MA8 2339 - 130 485 143436 13 6 0 38 74 57 8 7 0 84 1 0 16 29 16 15 6 4 23 2 0 9 7 5 19 4 1 9 6 7 31 chain 122728 chrX 155270560 + 15918450 15920029 THE1B-int 1605 - 5 1605 30151 420 0 1 4 1 0 466 31 33 71 1 2 146 0 25 249 3 0 4 6 0 134 8 10 35 chain 28111 chrX 155270560 + 15920029 15920383 THE1B 368 - 0 368 92602 189 11 10 114 0 15 40 chain 6595 chrX 155270560 + 15922630 15922716 MER53 195 - 108 193 180495 65 1 0 20 chain 37378 chrX 155270560 + 15957506 15957953 L1PA7 6471 - 3 446 72993 10 1 0 354 3 0 79 chain 4762 chrX 155270560 + 15982117 15982178 MADE1 96 - 1 96 197788 26 0 34 35 chain 31105 chrX 155270560 + 15982963 15983440 MER34B 572 - 0 521 82331 13 14 28 196 1 0 10 1 2 13 27 59 93 1 0 72 4 0 15 0 3 17 chain 11349 chrX 155270560 + 15994095 15994234 L1PA8 5853 - 0 137 154897 93 1 0 19 2 1 24 chain 30806 chrX 155270560 + 15996567 15997071 L1PB3 3668 + 3091 3563 82852 190 12 3 9 0 2 93 4 3 84 61 39 14 3 1 34 chain 5428 chrX 155270560 + 15997996 15998089 MER5A 189 + 40 132 190726 30 19 18 44 chain 45968 chrX 155270560 + 16028890 16029418 LTR6B 557 - 0 557 62066 56 0 1 6 0 1 133 0 1 293 1 27 39 chain 21145 chrX 155270560 + 16038111 16038445 THE1B 368 + 1 368 123389 39 0 15 64 1 2 27 0 8 16 2 1 25 37 47 123 chain 4017 chrX 155270560 + 16046481 16046530 MER2 342 + 153 202 207109 49 chain 27067 chrX 155270560 + 16062842 16063245 LTR7 482 - 6 482 96045 92 0 2 87 20 21 10 1 32 66 7 8 43 9 47 68 chain 297360 chrX 155270560 + 16064508 16068136 HERVH-int 3825 - 0 3825 13566 225 0 2 149 1 4 6 3 0 101 8 218 39 31 34 745 0 1 290 0 4 291 4 31 906 1 0 59 42 0 27 45 0 36 1 0 26 11 42 19 1 0 35 1 0 202 1 0 110 0 11 212 chain 21942 chrX 155270560 + 16068138 16068537 LTR7 482 - 0 482 120448 45 16 18 52 4 5 38 0 10 22 0 31 36 0 1 39 51 0 30 12 101 54 chain 19796 chrX 155270560 + 16085763 16086003 L1PA6 6164 + 5921 6161 127825 240 chain 5334 chrX 155270560 + 16087317 16087388 L1PB4 2604 - 32 102 191694 20 1 0 50 chain 231166 chrX 155270560 + 16087850 16091221 L1MA2 4263 - 149 3555 17246 10 1 0 39 14 7 83 19 17 18 26 24 107 3 0 62 1 2 83 1 0 38 21 6 32 6 2 185 6 2 165 0 1 147 0 2 49 34 72 60 1 3 254 3 0 120 0 2 330 0 1 67 4 8 146 31 17 17 0 10 151 0 2 65 116 140 24 13 17 782 7 9 5 3 0 4 0 1 18 chain 8321 chrX 155270560 + 16090263 16090360 L1MA2 4263 + 1575 1672 169275 97 chain 4399 chrX 155270560 + 16091227 16091289 MADE1 96 + 17 95 201939 15 2 18 45 chain 102657 chrX 155270560 + 16112094 16113865 L1MA2 4263 - 149 1600 36088 10 1 0 46 7 0 92 1 0 9 2 1 150 16 13 47 0 5 27 0 8 44 1 0 76 8 4 15 1 0 245 4 6 146 6 5 217 342 27 11 1 2 59 1 0 186 chain 4195 chrX 155270560 + 16116140 16116187 LTR8A 794 + 29 76 204617 47 chain 9731 chrX 155270560 + 16124185 16124306 MLT1A0-int 1658 + 12 133 161939 121 chain 14227 chrX 155270560 + 16127461 16127637 MSTA 426 - 234 410 143803 176 chain 3630 chrX 155270560 + 16130710 16130765 MLT1H 522 - 231 286 213157 34 0 4 4 4 0 13 chain 3916 chrX 155270560 + 16147427 16147561 MER3 215 + 62 206 208602 28 74 84 32 chain 3961 chrX 155270560 + 16149871 16149933 L1ME1 1623 - 134 190 207966 43 6 0 13 chain 7582 chrX 155270560 + 16154933 16155074 MER58B 340 - 152 301 173659 38 25 33 16 1 0 10 0 1 51 chain 3740 chrX 155270560 + 16160716 16160760 Charlie7a 264 + 138 182 211339 44 chain 22474 chrX 155270560 + 16163176 16163489 L1MA2 4263 + 3809 4115 118140 88 0 3 56 11 9 91 7 0 49 1 0 10 chain 25117 chrX 155270560 + 16173196 16173500 AluSp 311 - 9 311 104189 182 2 0 120 chain 93086 chrX 155270560 + 16179284 16181246 THE1C-int 1605 - 250 1560 38634 185 0 1 57 3 0 133 771 0 277 1 47 80 1 5 54 0 1 63 5 12 105 0 6 160 0 57 67 chain 27445 chrX 155270560 + 16181293 16181665 THE1C 375 - 0 375 94831 26 1 0 57 13 14 53 1 4 221 chain 29405 chrX 155270560 + 16197324 16197734 LTR7 482 - 0 482 87039 49 12 14 129 0 1 4 1 0 5 0 31 24 0 1 109 9 47 68 chain 242937 chrX 155270560 + 16199002 16202149 HERVH-int 3825 - 0 3825 16617 27 0 2 45 0 1 150 0 2 260 8 218 39 9 11 224 0 8 57 0 5 478 0 1 153 0 4 43 0 5 82 0 4 226 0 1 93 0 5 211 1 0 10 0 2 27 9 0 208 75 483 13 24 84 13 2 32 10 57 0 8 1 0 10 1 0 24 0 1 4 1 0 11 1 0 15 1 0 182 1 0 333 chain 5628 chrX 155270560 + 16216442 16216510 MER4D 903 + 236 304 188782 68 chain 11556 chrX 155270560 + 16222053 16222442 L1MA2 4263 + 3957 4218 154078 10 1 0 38 4 5 48 7 0 47 1 0 9 189 71 19 3 1 13 chain 22417 chrX 155270560 + 16224976 16225392 L1PB1 5432 + 5031 5413 118396 72 7 6 5 1 0 24 1 0 6 1 0 8 10 6 9 2 0 53 3 2 15 1 0 44 1 0 15 3 0 7 19 9 12 11 8 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 25830 chrX 155270560 + 16235009 16235377 LTR7B 505 - 14 505 100747 37 14 13 89 0 41 54 20 93 46 0 10 108 chain 205777 chrX 155270560 + 16236798 16239734 HERVH-int 3825 - 0 3544 18804 255 5 4 4 0 1 301 18 17 57 0 367 29 5 6 136 2 1 213 28 29 309 19 24 62 0 4 291 0 27 55 0 1 25 1 0 4 0 1 171 9 0 202 15 0 35 49 52 364 1 0 13 0 2 6 1 0 6 39 320 14 62 7 66 12 11 52 chain 26148 chrX 155270560 + 16240003 16240380 LTR7B 505 - 9 505 99407 42 14 13 88 1 42 54 17 86 56 0 10 105 chain 23875 chrX 155270560 + 16245992 16246392 LTR7 482 + 0 475 111057 41 50 45 15 21 71 52 8 40 48 2 0 163 chain 557238 chrX 155270560 + 16248801 16254978 L1PA3long 6157 - 0 6157 587 1074 11 0 1841 7 3 67 0 1 458 5 0 1998 11 11 698 1 0 6 chain 17008 chrX 155270560 + 16261142 16261384 L1MA1 4479 - 331 729 135570 5 1 0 36 2 0 29 1 0 126 3 0 6 1 0 13 0 163 13 0 1 6 chain 65142 chrX 155270560 + 16263212 16263984 L1PA7 6471 + 5699 6467 50505 608 0 1 149 5 0 10 chain 30231 chrX 155270560 + 16278920 16279238 AluYb8 318 + 0 318 84109 318 chain 61932 chrX 155270560 + 16289163 16289939 L1PA10 4194 - 33 808 51927 11 1 0 34 4 1 163 12 15 551 chain 273135 chrX 155270560 + 16291421 16295164 L1PB1 5432 - 10 3712 15009 15 4 3 13 1 0 21 1 0 24 67 50 12 8 7 41 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 13 11 131 0 1 165 1 0 39 2 0 141 10 30 604 0 1 21 6 8 7 10 0 19 8 0 58 23 0 135 27 19 68 9 14 37 5 4 120 0 4 57 0 4 135 1 18 75 2 0 688 8 0 48 1 2 4 1 0 685 0 1 40 chain 24866 chrX 155270560 + 16307735 16308093 THE1B 368 - 0 368 105541 65 0 1 59 35 45 29 1 0 169 chain 15374 chrX 155270560 + 16333153 16333333 L1PA3long 6157 - 10 191 140281 132 0 1 48 chain 558693 chrX 155270560 + 16339777 16345923 L1PA3long 6157 + 6 6157 432 929 0 4 2073 1 0 721 0 1 1572 0 1 850 chain 33824 chrX 155270560 + 16354980 16355359 L1P1 4361 - 33 410 77900 23 1 0 155 1 0 199 chain 73997 chrX 155270560 + 16355364 16356167 L1PA2 6032 + 5231 6032 46513 788 2 0 13 chain 4428 chrX 155270560 + 16358133 16358184 MADE1 96 + 45 96 201607 51 chain 41559 chrX 155270560 + 16358755 16359227 MER9a1 513 + 0 472 67207 472 chain 56649 chrX 155270560 + 16359628 16360409 L1PA16 3655 - 1197 2003 54751 196 0 1 71 1 0 86 1 2 48 9 30 14 1 2 210 7 9 137 chain 53545 chrX 155270560 + 16360411 16361034 L1PA6 6164 + 5538 6162 56647 508 0 1 115 chain 80757 chrX 155270560 + 16375726 16376860 L1MA2 4263 - 151 1276 43287 6 1 0 45 6 3 92 1 0 9 2 1 86 0 1 63 3 0 144 1 0 8 3 2 20 0 4 33 21 17 12 2 1 144 5 4 4 0 1 37 1 2 216 0 1 169 chain 554186 chrX 155270560 + 16378202 16384340 L1PA3long 6157 + 1 6157 928 304 7 6 168 0 3 221 0 14 37 0 1 967 1 0 235 0 1 3349 0 1 849 chain 39315 chrX 155270560 + 16391359 16391866 LTR19A 502 - 0 502 70301 24 1 0 166 0 1 74 6 5 176 4 0 56 chain 3174 chrX 155270560 + 16393684 16393717 LTR16C 481 - 171 204 221467 33 chain 11656 chrX 155270560 + 16398625 16398809 L1MB2 1706 + 21 218 153663 57 1 0 46 9 12 18 0 18 9 7 0 37 chain 98050 chrX 155270560 + 16416012 16417210 L1PA8 5853 - 7 1199 37263 85 3 2 15 1 0 49 2 0 16 1 0 71 4 2 42 1 0 555 0 2 353 chain 23215 chrX 155270560 + 16417947 16418292 L1MA2 4263 - 150 483 114622 9 1 0 34 18 12 93 2 1 6 1 0 152 3 0 26 chain 45958 chrX 155270560 + 16427696 16428185 L1HS 6032 + 5542 6032 62075 368 0 1 121 chain 20654 chrX 155270560 + 16428397 16428654 L1PA16 3655 + 3320 3578 125123 97 1 2 159 chain 30016 chrX 155270560 + 16439073 16439492 MSTA 426 - 0 426 84751 108 10 18 93 4 0 37 7 11 30 1 0 129 chain 95021 chrX 155270560 + 16440224 16441287 MER11C 1089 + 12 1073 38089 563 2 0 498 chain 6328 chrX 155270560 + 16441326 16441396 MER11B 1079 - 1009 1079 182569 70 chain 14013 chrX 155270560 + 16446738 16447083 L1PB1 5432 - 10 323 144537 18 1 0 13 1 0 15 0 5 15 68 54 6 1 0 14 1 0 45 2 1 15 2 1 52 18 12 12 1 0 6 1 0 22 9 0 7 chain 6700 chrX 155270560 + 16455476 16455563 MLT1B 390 - 23 109 179688 69 1 0 17 chain 29538 chrX 155270560 + 16457975 16458362 L1PA8 5853 - 0 372 86487 93 1 0 19 2 1 53 9 0 8 2 1 70 2 0 44 1 0 83 chain 5927 chrX 155270560 + 16462930 16463006 MLT1H2 457 - 316 392 185925 76 chain 60088 chrX 155270560 + 16464229 16465054 MER4D1 891 + 0 816 52780 76 0 2 32 29 1 6 4 0 84 0 15 106 0 1 89 2 1 17 1 0 165 5 12 209 chain 8720 chrX 155270560 + 16467410 16467521 MLT1A 405 - 264 375 167086 111 chain 26178 chrX 155270560 + 16470193 16470496 AluSp 311 - 7 311 99282 162 0 1 141 chain 22984 chrX 155270560 + 16472447 16472722 AluSp 311 + 10 289 115695 37 0 1 6 1 4 231 chain 36976 chrX 155270560 + 16474494 16475049 LTR7B 505 - 0 505 73542 226 5 60 17 107 2 200 chain 4804 chrX 155270560 + 16509415 16509510 MER33 330 - 76 177 197308 30 27 33 38 chain 28483 chrX 155270560 + 16511853 16512576 MSTA 426 - 0 426 91249 65 0 3 41 1 4 9 1 6 92 324 12 43 1 8 10 3 0 133 chain 25958 chrX 155270560 + 16512080 16512373 AluYk4 311 - 5 298 100182 293 chain 558423 chrX 155270560 + 16515482 16521631 L1PA3long 6157 + 6 6157 463 1440 1 14 1737 0 1 2107 0 2 802 2 0 5 12 0 43 chain 17677 chrX 155270560 + 16527263 16527561 MER1B 344 - 0 292 133755 69 69 63 160 chain 53604 chrX 155270560 + 16530746 16531371 PABL_A 660 + 0 660 56611 102 0 1 65 0 35 319 1 0 138 chain 23653 chrX 155270560 + 16533342 16533744 MSTA 426 - 0 426 112290 108 16 19 28 37 35 14 14 18 53 11 8 13 0 22 108 chain 56043 chrX 155270560 + 16539151 16539975 L1M1 2793 + 1877 2684 55093 47 0 1 159 0 4 15 13 4 22 5 10 30 1 2 177 0 1 85 5 0 40 4 5 39 0 1 33 17 1 75 1 0 56 chain 23671 chrX 155270560 + 16543099 16543486 THE1D 372 - 0 372 112196 35 2 1 62 13 6 34 4 10 31 2 0 5 14 22 91 19 0 75 chain 11253 chrX 155270560 + 16544988 16545127 THE1D 372 - 0 138 155215 34 1 0 104 chain 13455 chrX 155270560 + 16549648 16549924 L1PB1 5432 + 5170 5422 146503 50 2 1 16 1 0 40 5 4 15 1 0 4 3 0 9 8 0 14 31 26 21 1 0 21 1 0 13 4 3 10 1 0 5 chain 5338 chrX 155270560 + 16559627 16559703 MER33 330 + 132 219 191652 22 1 0 14 0 12 39 chain 25592 chrX 155270560 + 16566469 16566771 AluYc3 301 - 0 301 101771 11 2 0 175 1 2 113 chain 4549 chrX 155270560 + 16593114 16593390 MER4A1 472 + 0 297 82020 223 9 30 44 chain 123099 chrX 155270560 + 16593394 16594839 LTR12C 1709 + 0 1709 30007 262 8 9 193 0 1 363 0 160 124 1 0 5 3 1 106 0 4 25 1 0 143 0 102 211 chain 2851 chrX 155270560 + 16594839 16595012 MER4A1 472 + 297 472 82020 94 11 13 68 chain 11579 chrX 155270560 + 16597735 16597886 LTR8 732 - 505 658 153984 23 3 5 125 chain 212629 chrX 155270560 + 16598099 16601114 MER4-int 2692 + 11 2692 18316 25 2 0 44 368 0 19 2 0 19 1 0 26 0 2 5 11 5 11 1 0 370 6 0 63 1 0 91 0 2 90 1 14 114 0 1 69 1 0 4 0 1 25 4 22 7 0 5 16 0 1 188 1 0 208 1 0 13 1 4 172 0 10 362 1 0 257 1 0 59 0 1 177 0 1 178 chain 21351 chrX 155270560 + 16598174 16598538 LTR7 482 - 0 482 122680 45 17 18 31 1 3 79 0 1 44 8 40 10 1 11 17 0 51 17 15 14 18 1 0 37 0 23 23 chain 34389 chrX 155270560 + 16601122 16601815 MER4A1 472 + 0 449 77078 221 243 0 83 3 0 96 13 15 34 chain 11239 chrX 155270560 + 16601366 16601497 MER4A1 472 + 0 131 155265 131 chain 172810 chrX 155270560 + 16614318 16616223 L1PA3long 6157 - 0 1906 21733 12 3 5 204 1 0 187 1 0 448 0 1 1049 chain 102861 chrX 155270560 + 16616233 16617361 L1PA3long 6157 + 3046 4174 36035 1128 chain 38288 chrX 155270560 + 16628643 16629163 L1PA16 3655 + 3066 3590 71727 14 1 0 40 7 13 72 1 0 87 2 0 45 0 1 77 6 10 153 3 0 12 chain 4281 chrX 155270560 + 16629677 16629779 MER3 215 - 14 160 203460 35 39 83 28 chain 16828 chrX 155270560 + 16632124 16632348 MER30 238 - 0 238 136044 45 3 0 65 4 21 107 chain 2711 chrX 155270560 + 16634046 16634075 MER58B 340 - 144 173 230090 29 chain 15256 chrX 155270560 + 16639398 16639569 L1PA6 6164 + 5977 6149 140612 65 0 1 106 chain 4753 chrX 155270560 + 16645136 16645211 MADE1 96 - 5 96 197879 33 8 24 34 chain 3662 chrX 155270560 + 16662222 16662262 MLT1D 503 + 76 116 212535 40 chain 5329 chrX 155270560 + 16671735 16671847 MER5A 189 + 70 175 191731 52 38 31 22 chain 11239 chrX 155270560 + 16689413 16689566 MER41A 554 + 400 554 155264 30 6 7 117 chain 29117 chrX 155270560 + 16691004 16691308 AluYa5 310 - 6 310 88468 304 chain 159070 chrX 155270560 + 16691858 16695654 MER41-int 2638 + 86 2638 23454 18 24 15 25 0 3 23 27 13 16 16 15 18 2 0 14 2 9 35 9 5 151 7 0 13 1 0 19 1131 200 50 0 4 51 10 8 18 8 22 90 0 1 107 0 1 5 4 5 59 1 4 110 0 1 90 14 20 26 2 0 138 4 0 86 4 0 92 1 0 191 1 0 59 0 1 116 1 0 34 6 1 19 1 0 81 313 4 145 0 7 127 1 2 24 0 1 54 0 4 102 chain 7042 chrX 155270560 + 16692993 16693106 PABL_A-int 1935 + 441 556 177172 24 11 14 68 1 0 9 chain 37027 chrX 155270560 + 16695664 16696116 MER41A 554 + 13 467 73484 79 0 1 284 1 2 88 chain 3066 chrX 155270560 + 16704569 16704605 MLT1C 463 + 63 99 223644 36 chain 49646 chrX 155270560 + 16744123 16744734 PABL_A 660 - 0 660 59277 196 1 0 234 1 0 18 1 40 39 0 3 37 0 9 84 chain 94008 chrX 155270560 + 16745228 16748658 PABL_A-int 1935 - 42 1836 38348 4 1 0 9 2 0 9 6 1 16 3 1 17 5 4 50 69 30 25 1 0 8 310 0 172 8 10 176 0 1 39 7 10 41 1 6 99 15 19 161 5 4 21 678 52 14 5 9 33 0 3 27 3 5 114 15 14 195 913 242 91 0 4 18 8 6 28 2 0 6 chain 11953 chrX 155270560 + 16750416 16750787 PABL_A 660 - 480 660 152398 40 2 0 6 1 4 44 194 2 84 chain 24306 chrX 155270560 + 16775573 16775850 AluY 311 + 12 287 108625 121 2 0 154 chain 24230 chrX 155270560 + 16786041 16786344 AluY 311 + 1 299 109041 120 11 5 154 0 1 18 chain 33903 chrX 155270560 + 16787068 16787520 MER4A1 472 - 11 472 77767 217 16 18 48 0 5 143 1 0 8 0 1 4 0 2 15 chain 5709 chrX 155270560 + 16791634 16791702 MER51A 677 - 609 677 188026 68 chain 26143 chrX 155270560 + 16791751 16792042 AluSp 311 - 10 301 99428 291 chain 13520 chrX 155270560 + 16793680 16794181 MER47A 366 - 84 279 146283 46 319 13 44 0 1 46 1 0 45 chain 3453 chrX 155270560 + 16808624 16808662 L1MC2 1988 - 330 368 216126 38 chain 24534 chrX 155270560 + 16817009 16817291 AluSp 311 - 17 301 107346 29 0 2 253 chain 24523 chrX 155270560 + 16841324 16841607 AluSp 311 + 25 308 107419 283 chain 23804 chrX 155270560 + 16882364 16882676 AluSp 311 + 4 310 111453 224 19 11 24 0 2 45 chain 23956 chrX 155270560 + 16884386 16884672 AluSg 306 + 18 306 110585 255 0 2 31 chain 6074 chrX 155270560 + 16893322 16893390 U4 144 - 76 144 184620 68 chain 20764 chrX 155270560 + 16893795 16894039 L1PA6 6164 + 5918 6162 124734 244 chain 26341 chrX 155270560 + 16927548 16927844 AluSp 311 - 15 311 98647 296 chain 15192 chrX 155270560 + 16934623 16934809 L1PA3long 6157 - 15 204 140798 132 0 1 7 7 9 40 chain 35233 chrX 155270560 + 16939389 16939877 L1MA4 2864 + 1226 1714 75878 294 13 12 32 17 18 132 chain 37705 chrX 155270560 + 16944088 16944511 L1PA7 6471 - 19 441 72547 321 1 0 101 chain 21163 chrX 155270560 + 16954818 16955121 THE1B 368 - 61 368 123334 63 3 2 11 15 18 12 0 3 29 1 0 169 chain 3162 chrX 155270560 + 16956331 16956366 MER65A 464 + 410 445 221712 35 chain 24783 chrX 155270560 + 16963499 16963820 AluSq2 311 + 0 307 105979 52 16 1 80 0 1 173 chain 24286 chrX 155270560 + 16970204 16970510 L1PA7 6471 - 6 309 108731 6 2 0 10 0 1 48 3 1 237 chain 175872 chrX 155270560 + 16982167 16987893 SVA_D 2077 - 14 2077 21364 618 1 0 44 4 0 13 24 0 4 1 0 346 0 2 8 127 0 81 11 0 30 3 1 13 2 0 142 40 0 18 2784 0 33 676 0 619 7 8 58 2 8 17 chain 5595 chrX 155270560 + 16983295 16983357 SVA_D 2077 - 535 597 149358 62 chain 2941 chrX 155270560 + 16983642 16983676 SVA_D 2077 - 1316 1350 56603 34 chain 48871 chrX 155270560 + 16983697 16984262 SVA_D 2077 - 1374 2055 56603 114 0 116 451 chain 45027 chrX 155270560 + 16985965 16986481 SVA_D 2077 - 0 516 40096 516 chain 40839 chrX 155270560 + 16986514 16986982 SVA_D 2077 - 549 1016 40096 122 0 49 146 50 0 150 chain 313 chrX 155270560 + 16986782 16986828 SVA_D 2077 - 993 1039 99921 46 chain 3372 chrX 155270560 + 16986982 16987021 SVA_D 2077 - 1199 1238 145116 39 chain 1905 chrX 155270560 + 16987021 16987046 SVA_D 2077 - 889 914 126565 25 chain 4669 chrX 155270560 + 16987046 16987100 SVA_D 2077 - 1263 1317 145116 54 chain 4308 chrX 155270560 + 16987132 16987181 SVA_D 2077 - 1269 1318 203120 49 chain 22957 chrX 155270560 + 16998422 16998710 AluSc 308 - 9 299 115816 12 3 0 8 0 1 232 0 4 33 chain 14257 chrX 155270560 + 17012588 17012920 L1PB1 5432 + 5114 5418 143685 24 1 0 8 1 0 10 19 13 45 12 11 11 1 0 45 1 0 12 7 4 14 5 0 15 3 1 5 1 0 14 16 14 13 2 1 17 2 0 13 1 0 14 chain 28676 chrX 155270560 + 17017887 17018191 AluYa5 310 + 0 303 90426 132 1 0 171 chain 25194 chrX 155270560 + 17019801 17020159 THE1A 353 - 4 353 103771 135 13 12 92 4 3 22 13 5 12 0 1 67 chain 2895 chrX 155270560 + 17030112 17030146 Charlie4a 502 - 176 210 227118 34 chain 75804 chrX 155270560 + 17033536 17034366 L1PA4 6152 - 1 831 45592 830 chain 5941 chrX 155270560 + 17037674 17037917 AluJo 314 + 10 255 185771 28 138 0 24 11 151 42 chain 17205 chrX 155270560 + 17068542 17068756 Tigger3c 601 + 364 578 135027 214 chain 32974 chrX 155270560 + 17073769 17074124 L1HS 6032 + 5677 6032 79257 355 chain 21868 chrX 155270560 + 17084740 17085006 AluSc8 310 + 26 295 120759 106 0 3 160 chain 29026 chrX 155270560 + 17114500 17114810 AluYa5 310 + 0 309 88868 132 1 0 177 chain 2848 chrX 155270560 + 17129160 17129194 Tigger4a 237 - 187 221 227875 34 chain 81492 chrX 155270560 + 17133133 17134100 LTR5_Hs 974 - 0 974 42976 103 2 0 37 8 15 351 0 1 181 0 1 285 chain 61962 chrX 155270560 + 17135398 17136071 L1PA4 6152 - 0 673 51916 673 chain 29532 chrX 155270560 + 17136071 17136381 AluYa5 310 - 0 310 86512 310 chain 73774 chrX 155270560 + 17202164 17202969 L1PA3long 6157 - 11 816 46632 805 chain 42196 chrX 155270560 + 17215614 17216222 LTR18B 584 + 0 584 66400 208 6 3 40 4 0 135 6 4 10 34 19 49 1 0 69 0 1 46 chain 49759 chrX 155270560 + 17227344 17228250 PABL_A 660 + 0 607 59188 84 0 9 87 0 1 3 310 0 389 0 1 33 chain 95853 chrX 155270560 + 17239391 17240461 L1PA4 6152 - 22 1099 37861 737 3 10 330 chain 422116 chrX 155270560 + 17248145 17252772 L1PA4 6152 - 1 4631 9484 849 0 3 1360 0 1 427 1 0 1990 chain 127140 chrX 155270560 + 17262404 17263920 SVA_C 1631 - 7 1574 28783 620 0 1 53 1 0 6 0 88 42 37 0 55 36 37 272 1 0 393 chain 2515 chrX 155270560 + 17263126 17263163 SVA_C 1631 - 897 934 119837 37 chain 2447 chrX 155270560 + 17263218 17263254 SVA_C 1631 - 989 1025 119837 36 chain 6798 chrX 155270560 + 17265436 17265516 MLT1J1 437 + 60 140 178970 80 chain 2641 chrX 155270560 + 17281092 17281195 HAL1-2a_MD 234 + 39 144 231161 14 11 8 18 7 35 15 3 0 6 20 0 9 chain 111145 chrX 155270560 + 17282145 17283639 THE1B-int 1605 + 18 1605 33896 255 0 6 52 2 3 61 0 64 20 3 4 175 2 3 94 0 9 418 0 1 47 7 24 30 0 1 4 6 4 38 24 20 19 6 8 180 1 0 14 3 0 33 chain 66121 chrX 155270560 + 17293028 17293873 SVA_A 1864 - 0 1293 50041 310 0 1 226 38 452 38 8 5 35 5 2 32 8 44 88 0 3 57 chain 86191 chrX 155270560 + 17315378 17316700 L1PA7 6471 + 5447 6467 41079 174 1 0 84 2 0 437 299 2 317 2 0 6 chain 413583 chrX 155270560 + 17319959 17325693 L1PB1 5432 - 13 5413 9709 15 1 0 13 1 0 21 1 0 24 24 19 30 13 1 15 1 0 44 1 0 16 11 9 31 41 34 9 1 0 24 3 0 8 2 3 299 0 1 182 21 22 163 0 1 4 1 0 364 0 5 143 1 0 195 1 4 478 0 2 398 2 0 216 302 0 104 1 6 22 6 0 489 0 1 128 0 1 334 0 4 118 29 17 7 1 0 258 1 0 112 9 14 227 7 5 23 1 0 7 0 1 19 14 11 154 11 12 421 0 2 75 9 8 27 chain 149191 chrX 155270560 + 17337262 17338863 L1PA2 6032 - 2 1603 24729 1601 chain 40224 chrX 155270560 + 17342601 17343450 MER41C 542 - 0 542 68997 113 319 0 27 10 0 62 1 3 9 0 19 259 0 1 49 chain 551497 chrX 155270560 + 17360606 17366635 L1PA2 6032 - 0 6027 1251 58 0 4 2824 0 4 2028 1 0 735 8 0 123 1 0 251 chain 6122 chrX 155270560 + 17375692 17375814 L1PB3 3668 - 73 186 184249 13 3 2 12 6 2 37 3 1 25 1 0 3 1 0 18 chain 8648 chrX 155270560 + 17376063 17376159 U13_ 108 + 12 108 167480 96 chain 6688 chrX 155270560 + 17418340 17418425 L1MB7 1623 + 37 123 179774 34 0 1 51 chain 24524 chrX 155270560 + 17464425 17464770 LTR7 482 + 0 430 107414 101 13 63 60 8 40 41 0 1 13 0 2 109 chain 94209 chrX 155270560 + 17497033 17498136 L1PA7 6471 - 5 1120 38296 334 0 1 265 0 8 241 0 3 263 chain 56821 chrX 155270560 + 17498149 17498796 L1PA7 6471 + 4706 5351 54642 279 2 0 366 chain 311729 chrX 155270560 + 17506915 17510908 L1PA7 6471 - 2 3653 12937 10 2 0 659 336 0 176 0 3 607 0 1 64 1 0 659 0 6 448 11 0 138 1 0 168 2 1 7 0 1 24 3 1 5 0 1 672 chain 35916 chrX 155270560 + 17532335 17532818 MLT2A2 560 + 65 560 74994 63 13 14 64 8 3 190 3 14 74 0 4 30 0 1 38 chain 3534 chrX 155270560 + 17532818 17532863 MER20 218 + 117 161 214807 27 1 0 17 chain 6859 chrX 155270560 + 17546238 17546362 MER20 218 + 29 161 178509 53 31 39 40 chain 15897 chrX 155270560 + 17572970 17573187 L1PA7 6471 - 2 215 138666 10 3 0 103 7 6 27 1 2 4 1 0 61 chain 511079 chrX 155270560 + 17586806 17592954 L1PA6 6164 - 16 6164 6062 143 4 5 529 2 0 828 1 0 127 0 1 818 0 1 428 0 3 75 0 1 194 0 1 615 0 3 42 13 0 156 1 0 434 0 2 103 1 0 448 0 3 380 1 18 126 0 3 94 1 0 118 19 0 123 8 10 316 chain 50253 chrX 155270560 + 17607297 17608131 L1PB1 5432 - 5 781 58826 5 2 0 17 2 1 10 4 3 21 1 0 24 2 0 15 1 0 4 2 0 30 16 1 16 1 0 44 18 16 53 2 0 8 22 17 4 1 0 15 10 0 9 28 16 106 0 3 183 4 2 96 1 0 57 chain 27642 chrX 155270560 + 17683438 17683731 AluYf4 310 - 2 295 94234 293 chain 4830 chrX 155270560 + 17692537 17692611 MADE2 80 + 4 79 197017 27 6 7 41 chain 12734 chrX 155270560 + 17733522 17733708 L1PB2 3958 - 120 303 149312 63 2 1 21 2 0 21 1 2 51 1 0 24 chain 5239 chrX 155270560 + 17747325 17747403 L1PB1 5432 + 5350 5424 192625 20 1 0 22 1 0 12 1 0 14 1 0 6 chain 11706 chrX 155270560 + 17759802 17759944 MER107 203 - 58 202 153441 100 0 2 42 chain 544148 chrX 155270560 + 17799498 17805509 L1PA3long 6157 - 0 6157 2196 1522 1 0 278 0 8 1294 0 1 364 2 0 482 0 2 1041 0 3 258 5 133 57 0 7 84 0 1 469 1 0 153 chain 12714 chrX 155270560 + 17826102 17826317 MER30 238 + 0 238 149405 14 28 29 21 0 1 43 7 22 23 1 7 78 chain 20085 chrX 155270560 + 17844755 17845104 THE1D 372 + 0 372 126871 82 26 40 38 55 64 148 chain 24483 chrX 155270560 + 17898128 17898417 AluY 311 + 0 303 107636 17 4 19 97 1 0 170 chain 8870 chrX 155270560 + 17899368 17899467 LTR9B 643 - 84 183 166283 99 chain 14110 chrX 155270560 + 17925484 17925680 MER3 215 + 8 210 144174 143 5 11 48 chain 207630 chrX 155270560 + 17926477 17929184 L1PA11 4918 - 289 3032 18668 18 47 33 11 2 0 13 1 0 15 13 9 10 2 0 3 3 0 9 4 0 15 6 5 13 2 0 68 2 0 12 1 0 31 1 0 36 5 0 239 2 0 15 5 4 212 0 1 38 0 61 159 1 0 143 1 9 250 0 5 4 4 0 180 0 1 719 2 7 17 0 4 14 1 0 10 6 12 137 4 0 201 chain 5302 chrX 155270560 + 17957550 17957612 MLT1J2 417 - 247 309 192006 62 chain 12783 chrX 155270560 + 17972326 17972504 L1MA4A 3247 + 2953 3129 149123 16 2 1 137 1 0 22 chain 31937 chrX 155270560 + 17982091 17982573 L1PA15 4387 - 31 495 80956 24 14 8 11 0 1 4 3 1 37 15 13 40 1 0 16 4 0 15 3 2 54 1 0 26 1 0 172 1 0 40 chain 26878 chrX 155270560 + 17997847 17998212 L1PA7 6471 - 1 366 96705 67 6 7 59 30 29 203 chain 10386 chrX 155270560 + 17998212 17998326 L1PA7 6471 + 5966 6080 158758 114 chain 5281 chrX 155270560 + 18010308 18010368 MLT1A0 366 - 250 310 192198 60 chain 59566 chrX 155270560 + 18036581 18037278 L1PA6 6164 + 5467 6160 53074 514 0 1 171 5 0 7 chain 18831 chrX 155270560 + 18037822 18038181 L1PA15 4387 + 4015 4366 130574 85 10 9 21 1 0 24 0 11 19 6 5 15 5 1 12 1 0 50 10 7 40 25 18 24 1 0 10 chain 53829 chrX 155270560 + 18070650 18071527 L1PA15 4387 - 21 884 56464 10 1 0 28 5 1 12 3 1 39 22 19 39 18 13 10 0 1 8 1 0 16 4 11 28 1 0 26 1 0 214 33 31 13 0 2 13 4 0 19 2 0 119 6 8 182 chain 336694 chrX 155270560 + 18085668 18089409 L1PA5 6144 - 20 3759 11976 674 2 0 3065 chain 132313 chrX 155270560 + 18101740 18103287 LTR12C 1709 + 0 1709 27561 309 0 1 4 1 0 385 0 159 178 0 1 60 0 1 13 1 0 6 2 0 107 0 4 481 chain 41847 chrX 155270560 + 18113942 18114450 MER41A 554 - 0 554 66835 5 1 0 4 0 1 113 0 1 137 0 45 248 chain 14394 chrX 155270560 + 18117971 18118153 MER41B 635 + 0 183 143224 127 1 2 54 chain 551554 chrX 155270560 + 18122412 18129028 L1PA2 6032 + 2 6023 1248 625 602 0 80 0 7 5309 chain 54205 chrX 155270560 + 18123044 18123638 L1PA2 6032 + 5440 6032 56228 581 2 0 11 chain 4285 chrX 155270560 + 18129209 18129259 L1MD2 1676 + 750 800 203407 50 chain 18400 chrX 155270560 + 18129293 18129494 L1PA3long 6157 + 5956 6157 131787 201 chain 22899 chrX 155270560 + 18144871 18145159 AluSp 311 + 0 299 116112 43 0 13 230 2 0 13 chain 8179 chrX 155270560 + 18159810 18159904 L1PA7 6471 + 6376 6470 170071 94 chain 43902 chrX 155270560 + 18160702 18161403 Tigger1 2417 + 0 753 64332 21 5 0 7 38 83 111 49 50 32 6 8 13 0 5 278 2 6 139 chain 18587 chrX 155270560 + 18170394 18170744 THE1B 368 + 0 368 131267 64 21 31 12 8 10 60 36 32 4 0 1 14 7 15 41 0 2 22 1 0 60 chain 23563 chrX 155270560 + 18174719 18175111 THE1D 372 + 1 372 112776 70 32 12 82 29 28 41 12 12 126 chain 121494 chrX 155270560 + 18202612 18205576 L1M1 2793 + 670 2678 30540 32 112 74 23 1 0 32 10 8 62 1 0 99 10 9 100 0 4 67 1 0 68 4 6 15 1 4 74 5 3 9 1 4 19 366 44 16 0 3 130 4 5 91 0 1 207 5 16 29 13 18 70 313 0 22 0 3 19 5 8 44 1 0 105 326 14 71 4 0 61 19 18 37 0 2 24 1 0 50 4 10 103 5 4 14 11 10 42 1 0 5 chain 13122 chrX 155270560 + 18215871 18216028 THE1A 353 + 0 156 147760 110 1 0 46 chain 115212 chrX 155270560 + 18216047 18217331 L1PA3long 6157 + 4871 6156 32711 509 6 5 140 0 2 629 chain 14440 chrX 155270560 + 18239690 18239972 L1PA16 3655 - 63 343 143081 15 3 0 5 0 2 29 80 79 150 chain 3599 chrX 155270560 + 18241258 18241298 LTR41 747 + 669 709 213655 40 chain 39370 chrX 155270560 + 18245154 18245669 MLT2A2 560 - 0 558 70218 147 0 11 56 6 38 128 12 11 84 0 1 82 chain 23885 chrX 155270560 + 18268890 18269252 THE1C 375 - 0 371 110992 25 1 0 35 2 1 46 0 9 17 40 40 21 0 2 175 chain 14008 chrX 155270560 + 18286739 18286897 L1PA3long 6157 + 5999 6157 144555 158 chain 6909 chrX 155270560 + 18289887 18289976 Tigger7 736 - 265 353 178130 40 1 0 48 chain 24100 chrX 155270560 + 18327339 18327725 L1PA15 4387 + 3952 4327 109744 152 1 0 27 1 0 46 9 8 9 0 2 8 4 0 13 1 0 38 24 21 38 3 1 12 chain 6159 chrX 155270560 + 18328073 18328204 L1MA4 2864 + 2445 2584 183907 13 7 11 27 23 26 15 1 2 45 chain 26540 chrX 155270560 + 18331316 18331667 THE1A 353 + 0 353 97879 84 0 1 20 6 5 183 0 3 5 1 0 52 chain 8767 chrX 155270560 + 18338228 18338332 MLT1B 390 + 284 390 166831 28 0 2 76 chain 22679 chrX 155270560 + 18354292 18354573 AluSc 308 + 10 295 117168 43 10 14 228 chain 21923 chrX 155270560 + 18368419 18368715 AluSx 319 + 9 300 120533 30 21 18 225 2 0 18 chain 23189 chrX 155270560 + 18411056 18411398 THE1B 368 - 5 360 114729 70 7 6 117 2 1 78 14 0 8 10 39 36 chain 26627 chrX 155270560 + 18412163 18412455 AluYk4 311 - 12 304 97569 292 chain 5803 chrX 155270560 + 18414133 18414201 HY3 101 - 19 87 187112 68 chain 5623 chrX 155270560 + 18415816 18415896 MSTC 436 - 352 436 188842 59 6 10 15 chain 25620 chrX 155270560 + 18423691 18424079 MLT2A2 560 - 59 560 101626 86 6 115 82 30 31 4 1 0 164 1 5 14 chain 23802 chrX 155270560 + 18429014 18429307 AluY 311 + 0 289 111463 122 0 3 6 9 0 105 1 3 50 chain 2938 chrX 155270560 + 18430529 18430587 MER20 218 + 135 194 226368 26 15 16 17 chain 22366 chrX 155270560 + 18451389 18451684 AluSp 311 + 0 293 118644 32 1 0 74 4 6 167 6 3 11 chain 9057 chrX 155270560 + 18480450 18480559 MER5A 189 + 1 110 165276 109 chain 8961 chrX 155270560 + 18489305 18489479 L1MA3 4352 - 0 161 165821 22 6 2 14 1 0 26 1 0 5 2 1 24 10 8 15 4 0 44 chain 16488 chrX 155270560 + 18507580 18507884 MER4D1 891 + 448 765 136963 34 19 37 43 16 9 23 6 17 51 1 0 4 24 16 83 chain 27918 chrX 155270560 + 18522769 18523073 AluYg6 310 + 0 301 93287 123 3 0 178 chain 23720 chrX 155270560 + 18536514 18536808 AluSc 308 - 0 296 111932 177 1 0 76 0 3 40 chain 26062 chrX 155270560 + 18544907 18545202 AluSp 311 - 16 311 99783 295 chain 29677 chrX 155270560 + 18549807 18550125 AluYb8 318 - 0 318 85912 318 chain 18907 chrX 155270560 + 18572186 18572400 L1PA5 6144 - 0 213 130342 18 1 0 195 chain 62747 chrX 155270560 + 18577755 18578442 L1PA3long 6157 - 0 688 51561 519 0 1 168 chain 101249 chrX 155270560 + 18607263 18608416 L1PA5 6144 - 0 1161 36451 138 2 3 360 0 4 615 0 2 20 0 1 18 chain 24665 chrX 155270560 + 18629268 18629579 AluY 311 + 0 307 106635 123 4 3 6 3 0 175 chain 23956 chrX 155270560 + 18655238 18655532 AluSg 306 + 8 304 110584 125 0 4 120 0 1 41 3 0 5 chain 48069 chrX 155270560 + 18679383 18680148 LTR1 825 - 16 785 60429 72 0 1 73 0 3 42 8 9 32 8 3 37 1 0 116 53 66 34 6 0 10 9 18 13 27 16 224 chain 26682 chrX 155270560 + 18680430 18680749 L1PA5 6144 - 6 333 97379 143 0 1 165 0 7 11 chain 7078 chrX 155270560 + 18691387 18691473 L1MB2 1706 + 1604 1689 176896 7 1 0 78 chain 6994 chrX 155270560 + 18693028 18693101 tRNA-Val-GTA 73 - 0 73 177516 73 chain 48636 chrX 155270560 + 18698738 18699278 L1PA4 6152 - 1 542 60000 147 0 1 393 chain 3664 chrX 155270560 + 18707691 18707752 MER5A 189 + 43 105 212502 26 8 9 27 chain 5107 chrX 155270560 + 18719804 18719867 MER103C 291 - 110 173 194014 63 chain 45768 chrX 155270560 + 18728584 18729421 L1PB4 2604 + 1876 2572 62259 21 0 1 47 1 0 31 5 4 69 2 0 77 0 1 77 8 0 26 7 9 14 1 6 115 134 2 10 4 0 95 2 1 65 13 12 13 chain 3842 chrX 155270560 + 18747943 18747989 MIR 256 - 99 145 209751 46 chain 534299 chrX 155270560 + 18752258 18758380 L1PA5 6144 - 9 6144 3678 115 0 1 547 0 1 300 0 1 1972 0 3 251 0 2 59 0 1 220 0 1 347 2 1 620 1 0 524 30 21 1014 3 17 117 chain 2939 chrX 155270560 + 18765067 18765104 MIR 256 + 194 230 226343 31 1 0 5 chain 33424 chrX 155270560 + 18780541 18780934 MER41A 554 - 0 394 78526 386 0 1 7 chain 57372 chrX 155270560 + 18780997 18781656 PABL_A 660 - 0 660 54302 558 0 1 101 chain 14190 chrX 155270560 + 18790581 18790737 L1P1 4361 - 678 834 143918 156 chain 45040 chrX 155270560 + 18821075 18821587 MER9a2 513 - 0 513 63006 66 0 2 426 1 0 19 chain 49704 chrX 155270560 + 18862181 18863088 LTR10C 591 - 1 584 59234 157 0 2 84 326 0 340 chain 12665 chrX 155270560 + 18864460 18864609 AluSp 311 - 25 174 149587 149 chain 74031 chrX 155270560 + 18864610 18865533 LTR5_Hs 974 - 3 933 46498 188 7 7 94 6 8 17 0 1 21 10 9 164 0 4 172 0 1 244 chain 56916 chrX 155270560 + 18865826 18866478 PABL_A 660 - 7 660 54585 567 0 1 85 chain 23732 chrX 155270560 + 18876890 18877237 THE1B 368 - 0 368 111875 56 7 6 19 5 11 36 0 8 11 3 7 10 0 3 32 1 0 51 0 1 25 0 1 91 chain 6647 chrX 155270560 + 18879909 18880085 LTR35B 538 - 360 500 180123 37 72 0 48 6 42 13 chain 10037 chrX 155270560 + 18881439 18881560 MER50 708 + 562 683 160393 121 chain 5650 chrX 155270560 + 18882799 18882918 LTR23 429 + 178 298 188564 22 24 24 49 5 6 19 chain 25650 chrX 155270560 + 18882918 18883226 AluY 311 + 0 306 101492 7 0 1 74 4 0 182 0 1 41 chain 29992 chrX 155270560 + 18934600 18934994 MSTB 430 + 27 430 84829 95 0 1 42 7 0 28 4 19 218 chain 28532 chrX 155270560 + 18965736 18966255 L1PB1 5432 + 4930 5420 91039 132 0 1 40 1 2 9 1 0 20 1 0 12 1 0 10 6 2 11 3 1 50 2 1 15 1 0 41 6 5 14 3 0 6 16 6 19 24 19 24 1 0 20 0 1 13 1 0 16 chain 28895 chrX 155270560 + 18993260 18993633 THE1B 368 + 0 368 89472 13 2 0 34 0 1 145 4 1 99 1 0 75 chain 77731 chrX 155270560 + 18998007 18998972 LTR5B 1012 + 0 1012 44642 33 1 0 59 20 45 5 1 0 223 1 0 97 0 26 460 1 0 64 chain 4883 chrX 155270560 + 19035278 19035357 MER5A1 166 + 43 126 196452 7 1 0 32 6 11 33 chain 3106 chrX 155270560 + 19037500 19037535 MER5B 177 - 125 160 222814 35 chain 10060 chrX 155270560 + 19038063 19038295 L1MA8 2339 + 1996 2203 160273 13 1 0 69 60 41 38 6 3 8 0 4 24 6 0 7 chain 12378 chrX 155270560 + 19038583 19038735 L1PA8 5853 + 5703 5853 150715 37 2 1 19 1 0 93 chain 4807 chrX 155270560 + 19065441 19065497 LTR16E1 515 + 416 472 197275 56 chain 25551 chrX 155270560 + 19069200 19069491 AluYk4 311 - 20 311 101983 291 chain 2341 chrX 155270560 + 19071117 19071156 L1MB3 1562 - 10 48 234888 24 4 3 11 chain 23316 chrX 155270560 + 19085135 19085471 MER51B 395 + 0 392 114126 40 7 26 31 0 6 88 6 25 29 1 0 8 0 1 45 0 12 81 chain 15515 chrX 155270560 + 19090179 19090400 MER30 238 + 0 238 139840 16 1 2 81 10 0 13 0 26 100 chain 46040 chrX 155270560 + 19121083 19121707 MER41B 635 + 0 626 62003 126 0 1 72 1 0 83 0 1 101 15 16 51 18 17 40 0 1 117 chain 27692 chrX 155270560 + 19123538 19123854 L1PA7 6471 + 6151 6467 94069 316 chain 16886 chrX 155270560 + 19155019 19155211 L1PA5 6144 - 12 204 135873 192 chain 560179 chrX 155270560 + 19160786 19166818 L1PA2 6032 + 0 6032 342 6032 chain 3056 chrX 155270560 + 19187843 19187875 MER3 215 + 48 80 223872 32 chain 25382 chrX 155270560 + 19205866 19206211 MER83B 357 - 0 357 102771 207 22 34 116 chain 4894 chrX 155270560 + 19225108 19225195 AluJr4 308 - 130 219 196334 40 0 1 4 16 17 27 chain 14475 chrX 155270560 + 19226366 19226524 L1PA4 6152 - 9 167 142964 158 chain 11964 chrX 155270560 + 19226537 19226671 L1PA4 6152 + 5826 5962 152341 96 0 2 38 chain 112848 chrX 155270560 + 19238269 19239878 L1PB1 5432 - 8 1593 33419 4 1 0 16 1 0 9 0 3 22 1 0 24 3 4 10 8 5 19 19 8 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 20 15 9 1 0 20 3 0 9 1 2 20 0 4 82 4 3 85 8 10 84 5 3 179 8 5 391 0 8 20 22 0 6 0 1 184 0 16 163 chain 122498 chrX 155270560 + 19247885 19249317 L1PA7 6471 - 12 1455 30221 143 15 7 20 0 12 231 0 1 429 0 2 8 0 4 586 chain 66641 chrX 155270560 + 19249317 19250058 L1PA7 6471 + 4278 5019 49654 741 chain 2744 chrX 155270560 + 19252532 19252585 MER51A 677 + 176 224 229560 24 11 6 18 chain 34561 chrX 155270560 + 19253636 19254206 L1PB2 3958 - 120 674 76809 63 6 5 13 15 14 62 1 0 29 10 10 25 1 0 57 1 4 9 0 3 5 15 8 55 0 3 22 5 0 15 2 0 7 1 0 61 10 6 55 2 0 23 chain 3065 chrX 155270560 + 19258846 19258878 MLT1H2 457 + 88 120 223671 32 chain 23454 chrX 155270560 + 19263015 19263376 THE1B 368 + 0 368 113357 42 6 7 59 3 2 59 1 0 31 35 43 125 chain 94059 chrX 155270560 + 19265607 19266679 MER11C 1089 + 0 1073 38332 216 0 2 345 6 5 505 chain 20489 chrX 155270560 + 19284395 19284773 THE1D 372 + 0 372 125657 56 11 2 16 4 5 87 80 82 124 chain 12954 chrX 155270560 + 19290020 19290204 MLT1B 390 - 0 158 148410 134 26 0 24 chain 545178 chrX 155270560 + 19291492 19297625 L1PA4 6152 - 0 6146 2052 6 0 5 322 5 6 792 4 12 1585 2 0 241 1 0 17 0 1 2219 0 1 939 chain 5929 chrX 155270560 + 19310163 19310378 MER3 215 - 17 214 185895 12 0 1 19 124 104 36 0 1 24 chain 28507 chrX 155270560 + 19330418 19330785 THE1B 368 - 0 368 91164 173 1 3 23 1 0 169 chain 4109 chrX 155270560 + 19341606 19341699 MER8 282 + 0 137 205782 32 30 74 31 chain 7867 chrX 155270560 + 19355283 19355379 LTR3A 482 - 40 135 171887 40 1 0 55 chain 23919 chrX 155270560 + 19382736 19383032 AluSp 311 + 0 303 110813 91 0 4 14 0 3 191 chain 18052 chrX 155270560 + 19383350 19383657 MER39B 650 + 267 586 132728 36 1 0 5 0 2 23 4 0 6 5 10 85 21 25 70 11 17 40 chain 8063 chrX 155270560 + 19394891 19394987 HY3 101 + 0 96 170673 96 chain 6433 chrX 155270560 + 19395037 19395159 MLT1C 463 - 306 431 181752 28 34 35 55 0 2 5 chain 48894 chrX 155270560 + 19401623 19402546 L1MA2 4263 + 3439 4218 59810 146 6 0 47 4 2 28 1 0 147 3 0 146 22 20 83 8 1 10 1 2 34 1 0 9 195 74 15 1 0 3 1 0 12 chain 6161 chrX 155270560 + 19434864 19434942 Tigger2 2703 + 2542 2632 183881 18 0 12 60 chain 540803 chrX 155270560 + 19435183 19441296 L1PA4 6152 + 7 6143 2689 364 0 2 1049 0 5 13 1 0 1598 0 1 144 1 0 68 0 3 239 0 4 276 0 1 475 0 1 12 0 3 1127 0 3 606 1 3 139 chain 28562 chrX 155270560 + 19465719 19466027 AluYa5 310 + 0 307 90910 97 1 0 210 chain 11511 chrX 155270560 + 19470901 19471067 MER30 238 + 46 232 154246 58 7 21 24 4 10 73 chain 7122 chrX 155270560 + 19477342 19477458 MIR 256 + 73 185 176599 71 18 14 27 chain 43470 chrX 155270560 + 19486732 19487215 L1PA4 6152 - 1498 1985 64519 302 0 4 181 chain 130903 chrX 155270560 + 19487215 19488662 L1PA4 6152 + 4687 6134 27883 1447 chain 32172 chrX 155270560 + 19493044 19493520 MER1A 529 - 0 471 80578 64 19 11 303 25 24 39 4 8 22 chain 254245 chrX 155270560 + 19527361 19530447 L1PA8 5853 + 2338 5853 16018 147 0 4 393 1 0 316 0 4 19 4 10 84 1 28 63 0 12 100 1 2 76 0 2 306 0 2 217 0 373 511 0 2 85 15 14 456 1 0 44 2 0 70 8 1 8 0 1 4 1 0 5 0 5 38 0 4 16 2 1 92 chain 122012 chrX 155270560 + 19614308 19616333 Tigger1 2417 - 0 1754 30380 19 25 42 17 5 4 50 10 8 5 0 2 5 0 3 11 2 0 30 9 7 6 0 2 8 0 1 161 0 2 114 0 1 475 11 13 254 310 0 125 9 14 56 4 6 35 0 7 174 1 3 94 chain 30513 chrX 155270560 + 19653307 19653648 L1PA8A 6298 + 5950 6291 83398 341 chain 6516 chrX 155270560 + 19657118 19657237 MER20 218 + 90 206 181114 60 29 25 12 0 1 18 chain 6456 chrX 155270560 + 19658928 19659017 MER51A 677 + 178 257 181595 21 10 0 58 chain 23866 chrX 155270560 + 19668388 19668715 THE1C 375 - 39 375 111104 138 12 13 71 1 2 56 0 9 34 2 0 13 chain 3705 chrX 155270560 + 19675523 19675565 L1MB3 1562 + 1232 1274 211877 42 chain 46495 chrX 155270560 + 19775329 19775927 PRIMA4_LTR 623 + 37 623 61603 54 0 1 96 4 0 66 3 4 74 3 2 50 8 0 151 1 0 88 chain 127116 chrX 155270560 + 19797544 19798949 L1PA2 6032 - 0 1390 28786 535 17 3 608 1 0 244 chain 30449 chrX 155270560 + 19854848 19855223 THE1C 375 + 0 375 83533 258 1 0 34 0 2 56 1 0 25 chain 23712 chrX 155270560 + 19890607 19890902 AluY 311 + 0 293 111966 107 16 11 14 0 1 142 0 2 16 chain 23051 chrX 155270560 + 19897093 19897382 AluJb 308 + 12 302 115388 11 0 2 100 1 0 177 chain 37311 chrX 155270560 + 19910887 19911321 L1PA7 6471 - 8 448 73070 311 0 1 19 0 1 47 0 4 57 chain 18777 chrX 155270560 + 19925062 19925838 L1PB1 5432 + 5030 5422 130749 73 436 67 59 9 8 44 1 0 15 45 36 13 1 0 25 1 0 22 1 0 12 1 0 18 chain 25814 chrX 155270560 + 19926702 19927121 MER50 708 - 18 708 100815 147 1 6 18 16 17 18 1 0 44 9 215 40 0 62 19 7 8 38 4 1 57 chain 558239 chrX 155270560 + 19958394 19964414 L1PA2 6032 - 0 6028 480 149 2 9 4744 0 1 1125 chain 15752 chrX 155270560 + 19976675 19976925 Tigger3a 397 + 139 335 139107 188 54 0 8 chain 4589 chrX 155270560 + 19991291 19991342 L1MB7 1623 - 436 487 199756 51 chain 22544 chrX 155270560 + 19992733 19993006 AluSc8 310 + 16 291 117830 117 0 2 156 chain 8399 chrX 155270560 + 20003177 20003277 HY3 101 - 1 101 168857 100 chain 3448 chrX 155270560 + 20050809 20050849 MLT1G3 592 + 13 53 216247 40 chain 7706 chrX 155270560 + 20055106 20055190 HERVL-int 5654 - 5569 5653 172897 84 chain 10106 chrX 155270560 + 20055193 20055319 MLT2A2 560 - 17 145 160068 70 0 2 56 chain 177889 chrX 155270560 + 20055324 20057654 HERVL-int 5654 + 3366 5654 21175 170 0 14 47 12 2 367 5 7 286 0 1 641 0 23 58 6 8 355 0 1 50 115 28 9 4 0 51 0 3 63 0 14 20 1 0 70 chain 8086 chrX 155270560 + 20057322 20057417 HERVL-int 5654 + 4365 4460 170566 95 chain 36350 chrX 155270560 + 20057654 20058471 MLT2A2 560 + 0 560 74432 86 0 1 96 1 0 5 349 49 71 6 38 56 0 11 147 chain 5198 chrX 155270560 + 20077384 20077464 MER5A 189 - 74 151 193044 34 8 5 38 chain 25794 chrX 155270560 + 20084032 20084303 AluYb8 318 - 11 282 100901 271 chain 25280 chrX 155270560 + 20118859 20119154 AluSp 311 + 2 297 103315 295 chain 6598 chrX 155270560 + 20128808 20128920 MER2 342 + 217 329 180467 62 0 1 8 18 17 24 chain 22956 chrX 155270560 + 20152584 20152883 AluSz 310 + 11 299 115822 281 11 0 7 chain 7714 chrX 155270560 + 20189195 20189285 Tigger2b_Pri 1066 + 830 927 172843 83 0 7 7 chain 72248 chrX 155270560 + 20208990 20209813 L1PA7 6471 - 1 823 47358 764 1 0 58 chain 8875 chrX 155270560 + 20231731 20231837 L1PA4 6152 + 6047 6151 166258 98 2 0 6 chain 3298 chrX 155270560 + 20276328 20276364 MER3 215 - 100 136 219003 36 chain 330596 chrX 155270560 + 20293722 20297644 L1PA7 6471 + 2364 6469 12181 155 0 2 111 13 0 1314 0 7 249 1 0 4 0 1 324 0 11 32 1 0 4 0 1 770 1 0 272 1 0 77 1 3 90 1 0 80 0 176 89 0 1 332 chain 5795 chrX 155270560 + 20352324 20352406 MER5A1 166 - 35 116 187207 57 4 3 21 chain 69416 chrX 155270560 + 20353467 20354237 L1P1 4361 + 3560 4328 48643 591 1 0 154 1 0 23 chain 28740 chrX 155270560 + 20361524 20361878 THE1A 353 + 0 353 90169 110 1 0 243 chain 126281 chrX 155270560 + 20361879 20363473 THE1A-int 1579 + 1 1562 29009 32 0 1 576 39 5 104 0 1 28 1 0 668 1 0 91 1 2 53 chain 28125 chrX 155270560 + 20363492 20363844 THE1A 353 + 2 353 92554 109 1 0 114 10 10 118 chain 5139 chrX 155270560 + 20374257 20374408 MER3 215 - 5 159 193679 35 65 0 13 4 72 34 chain 125219 chrX 155270560 + 20384074 20385532 LTR12C 1709 - 0 1709 29317 481 0 4 100 0 207 40 0 40 837 chain 8964 chrX 155270560 + 20403376 20403480 L1PA7 6471 + 5705 5809 165803 104 chain 58039 chrX 155270560 + 20403480 20404140 L1PA7 6471 + 5814 6469 53954 643 5 0 12 chain 21595 chrX 155270560 + 20409102 20409371 AluY 311 + 10 286 121786 43 19 25 54 0 1 153 chain 32425 chrX 155270560 + 20430568 20430954 L1PA8A 6298 - 6 406 80160 105 0 2 270 0 12 11 chain 122040 chrX 155270560 + 20434478 20435798 L1PA2 6032 + 4709 6029 30372 1320 chain 4356 chrX 155270560 + 20453985 20454077 MLT1G 592 - 462 551 202484 21 1 0 6 6 5 33 10 9 15 chain 28533 chrX 155270560 + 20508628 20508940 L1PA5 6144 - 1 313 91033 312 chain 9071 chrX 155270560 + 20509666 20509811 MER3 215 + 48 198 165212 32 1 0 31 6 6 37 2 8 36 chain 45266 chrX 155270560 + 20512399 20512912 L1PA3long 6157 - 0 513 62750 147 6 0 349 0 6 11 chain 30427 chrX 155270560 + 20524200 20524518 AluYb8 318 + 0 318 83586 318 chain 4200 chrX 155270560 + 20537371 20537424 MER5A1 166 - 1 54 204540 53 chain 49629 chrX 155270560 + 20557961 20559356 L1MA3 4352 - 0 785 59296 22 6 2 12 1 0 28 8 6 24 2 0 22 4 0 15 585 11 14 30 29 54 50 24 26 6 8 375 0 2 111 chain 16885 chrX 155270560 + 20558137 20558332 L1PA6 6164 - 2 197 135877 165 1 0 4 0 1 25 chain 32145 chrX 155270560 + 20558332 20558690 L1PA6 6164 + 5594 5953 80315 237 0 1 121 chain 41474 chrX 155270560 + 20570496 20571073 MLT2A2 560 - 0 560 67321 43 2 0 104 0 11 38 8 10 37 28 1 136 2 1 179 chain 16868 chrX 155270560 + 20573306 20573526 L1PA8 5853 + 5638 5853 135919 44 1 0 5 3 1 52 2 1 19 1 0 93 chain 26632 chrX 155270560 + 20583318 20583621 L1PA4 6152 + 5854 6152 97549 87 6 0 97 0 1 113 chain 3555 chrX 155270560 + 20590539 20590623 MER53 195 + 75 159 214440 20 11 13 22 10 8 21 chain 32113 chrX 155270560 + 20594622 20594974 L1PA3long 6157 - 0 352 80669 352 chain 180257 chrX 155270560 + 20598504 20600492 L1PA4 6152 + 4145 6134 20967 1672 0 1 316 chain 31162 chrX 155270560 + 20604859 20605294 MLT2A1 477 + 2 467 82235 166 5 2 33 1 2 175 9 5 12 10 46 24 chain 21505 chrX 155270560 + 20606143 20606508 THE1D 372 - 0 364 122128 141 1 0 7 1 0 24 33 34 14 1 8 64 5 6 22 9 0 20 1 0 17 0 2 5 chain 36977 chrX 155270560 + 20608661 20609183 L1MA2 4263 - 2389 2941 73541 77 1 0 4 2 1 16 2 6 21 0 8 9 1 7 96 5 6 77 0 12 93 7 8 111 chain 13363 chrX 155270560 + 20639136 20639433 MLT1B 390 - 42 343 146840 111 70 65 41 5 4 8 5 0 9 8 13 32 0 10 8 chain 26562 chrX 155270560 + 20663384 20663718 L1PA10 4194 + 3830 4160 97801 275 14 11 34 1 0 10 chain 81238 chrX 155270560 + 20666545 20667426 L1PA3long 6157 - 2323 3204 43068 881 chain 208465 chrX 155270560 + 20667427 20669723 L1PA3long 6157 + 3861 6150 18610 2142 7 0 147 chain 133866 chrX 155270560 + 20677031 20678527 L1P1 4361 - 356 1856 27248 18 0 4 1478 chain 25323 chrX 155270560 + 20678527 20678800 L1PA3long 6157 - 549 822 101726 273 chain 50976 chrX 155270560 + 20678800 20679356 L1PA3long 6157 + 5601 6157 58326 556 chain 12540 chrX 155270560 + 20689125 20689341 MER6A 605 - 30 252 150080 24 32 38 17 1 2 59 1 0 82 chain 76912 chrX 155270560 + 20705443 20706613 L1MA2 4263 - 150 1310 45017 9 1 0 35 19 11 83 23 21 5 0 2 104 47 44 137 1 0 74 7 4 18 8 7 84 5 4 67 1 0 117 0 6 29 0 1 49 0 1 13 0 1 234 chain 54002 chrX 155270560 + 20706613 20707375 L1M1 2793 - 1235 1983 56216 266 30 23 18 4 0 43 0 4 24 1 0 177 1 0 101 12 9 62 2 0 21 chain 7609 chrX 155270560 + 20710099 20710428 MLT2D 439 - 109 439 173483 15 0 1 15 1 0 45 220 221 33 chain 251474 chrX 155270560 + 20721125 20723887 L1PA3long 6157 - 2 2764 16147 337 1 0 641 0 1 1783 chain 23029 chrX 155270560 + 20724900 20725170 AluY 311 + 39 311 115493 93 0 1 11 0 1 166 chain 27818 chrX 155270560 + 20725489 20725861 THE1B 368 + 0 367 93637 15 2 0 157 5 4 23 2 0 168 chain 19596 chrX 155270560 + 20735528 20735885 THE1C 375 - 0 375 128396 126 26 43 6 7 0 18 0 3 61 47 48 17 0 6 34 2 0 13 chain 236808 chrX 155270560 + 20740277 20742878 L1PA3long 6157 + 3557 6157 16937 498 1 0 2102 chain 23612 chrX 155270560 + 20767137 20767395 L1PA5 6144 + 5872 6130 112514 258 chain 302412 chrX 155270560 + 20775011 20778652 L1PA4 6152 + 2468 6151 13301 448 2 0 340 0 1 29 0 1 46 260 302 47 1 0 1499 0 1 969 chain 23306 chrX 155270560 + 20775876 20776133 L1PA4 6152 - 1704 1961 113187 257 chain 7559 chrX 155270560 + 20788983 20789109 L1MA4 2864 + 1884 2012 173813 61 12 8 30 0 1 9 1 6 13 chain 511136 chrX 155270560 + 20789492 20795431 L1PA5 6144 + 219 6134 6055 189 3 6 6 3 0 498 0 4 30 24 0 217 9 0 1025 0 2 528 0 1 307 0 1 4 1 0 133 1 0 332 1 0 540 1 0 277 0 1 977 0 4 833 chain 4772 chrX 155270560 + 20795447 20795499 L1PA5 6144 + 5761 5813 197665 52 chain 27598 chrX 155270560 + 20795500 20795831 L1PA5 6144 + 5813 6144 94350 331 chain 14534 chrX 155270560 + 20796897 20797241 L1MA4 2864 + 2479 2801 142787 18 3 2 10 7 6 140 113 94 19 1 0 33 chain 40156 chrX 155270560 + 20802515 20802967 L1PA3long 6157 + 5707 6152 69101 296 7 0 149 chain 48035 chrX 155270560 + 20804183 20804842 L1PA7 6471 - 1 643 60453 40 14 17 99 5 6 247 17 0 25 32 28 180 chain 12980 chrX 155270560 + 20814127 20814294 L1PA8 5853 - 0 165 148311 92 2 1 19 2 1 52 chain 27176 chrX 155270560 + 20816989 20817337 THE1C 375 + 0 347 95678 180 1 0 6 1 0 98 0 1 62 chain 37582 chrX 155270560 + 20817366 20817944 THE1C-int 1605 + 0 510 72711 12 5 6 34 0 1 154 0 3 235 86 13 52 chain 11704 chrX 155270560 + 20818832 20818972 THE1C 375 + 36 177 153451 4 0 1 136 chain 7112 chrX 155270560 + 20818997 20819087 THE1C 375 + 195 285 176668 90 chain 5676 chrX 155270560 + 20819090 20819164 THE1C 375 + 302 375 188333 47 1 0 26 chain 2926 chrX 155270560 + 20819787 20819823 MIR 256 + 136 172 226567 36 chain 75051 chrX 155270560 + 20829935 20830770 L1PA4 6152 - 6 841 45995 835 chain 40491 chrX 155270560 + 20836340 20837007 L1PB1 5432 + 4782 5420 68605 23 0 1 113 0 9 175 3 2 11 7 0 18 1 0 12 1 0 12 5 1 8 2 0 52 1 0 14 8 7 31 16 15 10 1 0 4 2 0 8 9 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 7527 chrX 155270560 + 20840776 20840949 L1MC1 2226 - 144 295 173991 19 1 0 8 15 21 40 7 0 10 24 4 49 chain 545987 chrX 155270560 + 20863561 20869742 L1PA4 6152 + 0 6150 1947 580 1 0 182 5 6 66 17 0 271 17 0 841 0 2 3267 1 2 933 chain 72835 chrX 155270560 + 20877085 20877915 L1PA4 6152 - 3 834 47109 110 0 1 720 chain 26365 chrX 155270560 + 20877916 20878246 L1P1 4361 + 4023 4341 98556 23 9 0 104 1 0 155 1 0 23 2 1 12 chain 22448 chrX 155270560 + 20880291 20880658 THE1D 372 + 0 372 118260 25 2 4 131 31 34 12 17 18 116 1 0 32 chain 2848 chrX 155270560 + 20881537 20881588 MLT1A0 366 + 290 342 227874 10 1 0 14 3 5 23 chain 273563 chrX 155270560 + 20886909 20890400 HERVL-int 5654 + 13 3710 14994 402 11 7 177 7 8 239 0 1 450 6 2 534 0 3 102 3 212 499 42 41 5 0 1 1014 chain 286706 chrX 155270560 + 20893421 20897423 L1PA10 4194 + 175 4150 14244 12 2 0 14 67 54 14 55 45 21 13 11 7 1 0 10 5 4 7 1 0 6 1 0 15 7 0 10 1 0 66 1 0 4 17 6 8 0 9 13 0 1 162 0 1 192 0 1 216 3 19 50 1 0 237 0 3 143 1 0 56 0 7 17 1 0 177 0 1 4 7 6 10 1 0 4 0 1 386 0 3 402 0 2 51 1 0 16 0 4 13 0 3 118 0 1 138 23 0 268 0 1 210 0 1 168 3 1 95 1 0 4 1 2 90 0 4 282 1 0 19 7 6 10 2 0 33 chain 12403 chrX 155270560 + 20939984 20940312 L1PB1 5432 - 6 306 150624 8 1 0 12 0 2 12 9 8 14 1 0 24 2 0 11 12 9 17 42 30 43 18 16 51 19 13 12 1 0 6 1 0 12 chain 23844 chrX 155270560 + 20956008 20956490 L1M1 2793 - 1677 2132 111216 62 7 9 38 0 3 5 15 12 85 1 0 8 3 1 54 1 0 6 2 0 31 1 0 30 2 0 6 10 7 14 2 0 5 2 0 7 49 36 36 chain 27630 chrX 155270560 + 20971745 20972063 AluYk4 311 + 0 311 94266 45 7 0 266 chain 31367 chrX 155270560 + 20982088 20982724 L1MA3 4352 + 3686 4328 81877 179 15 19 147 5 9 53 142 150 17 1 0 22 2 1 5 1 0 24 9 2 14 chain 63309 chrX 155270560 + 20989597 20990354 LTR17 781 + 0 781 51316 327 1 0 285 0 1 64 0 1 50 0 22 23 0 1 7 chain 3968 chrX 155270560 + 21008755 21008807 L1MB3 1562 + 1323 1374 207863 28 1 0 23 chain 116331 chrX 155270560 + 21009183 21010718 THE1C-int 1605 - 0 1605 32330 451 1 2 270 12 13 115 4 13 98 22 21 164 6 13 262 0 54 109 5 4 16 chain 32321 chrX 155270560 + 21013311 21013761 MER4A1 472 + 0 472 80329 14 0 2 25 0 6 5 1 2 85 1 0 41 13 25 195 3 5 67 chain 26222 chrX 155270560 + 21018779 21019138 MER4A1 472 + 81 472 99119 25 1 0 33 1 0 35 0 33 188 9 11 60 1 0 6 chain 5074 chrX 155270560 + 21024492 21024577 LTR16A2 485 - 161 245 194380 19 1 2 37 1 0 11 3 2 13 chain 3630 chrX 155270560 + 21033025 21033067 MLT1G1 539 - 9 51 213169 42 chain 17546 chrX 155270560 + 21039343 21039749 L1M1 2793 + 661 1026 134135 20 69 59 5 2 0 20 32 11 26 1 0 29 2 0 8 5 4 52 3 1 5 1 0 22 0 1 4 1 0 75 1 0 23 chain 122146 chrX 155270560 + 21048159 21049697 THE1B-int 1605 - 0 1571 30331 9 0 1 10 0 1 152 3 8 820 2 3 145 1 26 396 chain 2436 chrX 155270560 + 21059539 21059642 L2a 937 + 189 292 233900 16 52 57 7 5 0 23 chain 298094 chrX 155270560 + 21061328 21065912 L1PA8 5853 - 0 5275 13527 15 9 47 21 11 10 19 2 1 26 20 21 14 2 1 66 3 1 42 6 5 555 2 0 556 3 0 460 0 2 596 1 2 127 0 6 46 3 0 253 0 4 24 0 4 369 0 1 352 767 1424 8 3 0 15 4 3 147 14 10 9 1 0 13 chain 18517 chrX 155270560 + 21079374 21079690 L1PA17 2846 + 2380 2685 131453 82 10 14 20 37 25 5 0 1 6 1 0 67 1 0 32 1 0 18 1 0 35 chain 57083 chrX 155270560 + 21083220 21084145 L1PB1 5432 + 4512 5427 54486 109 3 0 127 7 11 74 6 28 131 0 1 110 1 2 9 1 0 24 1 0 9 1 0 9 7 3 7 0 4 50 3 2 14 1 0 44 1 0 11 60 49 6 2 0 24 1 0 17 15 4 13 1 0 12 2 0 7 1 0 4 chain 163461 chrX 155270560 + 21085744 21087680 L1PA7 6471 - 1 1944 22883 4 1 0 8 0 1 143 0 2 126 3 5 176 0 2 389 1 0 257 0 2 828 chain 27992 chrX 155270560 + 21103410 21103768 THE1B 368 - 0 368 93023 168 4 0 27 2 1 113 0 15 44 chain 540935 chrX 155270560 + 21107300 21113580 L1PA4 6152 + 6 6151 2674 525 4 0 49 1 0 592 1 2 155 16 5 1491 108 0 857 1 0 1194 9 5 423 0 4 256 15 4 583 chain 137903 chrX 155270560 + 21116575 21118103 L1P1 4361 - 48 1573 26495 8 1 0 155 1 0 475 1 0 887 chain 7113 chrX 155270560 + 21148106 21148181 L1PA2 6032 + 5771 5846 176660 75 chain 115444 chrX 155270560 + 21151705 21153114 L1PA8A 6298 + 4882 6292 32627 265 1 0 6 1 0 54 6 7 272 1 0 81 6 8 165 0 1 551 chain 147595 chrX 155270560 + 21155941 21157680 L1PA7 6471 - 2 1743 24943 332 0 1 515 1 0 26 0 1 4 1 0 7 0 3 624 2 1 227 chain 92598 chrX 155270560 + 21157680 21158852 L1PA7 6471 + 3550 4707 38730 110 45 29 553 0 1 464 chain 102868 chrX 155270560 + 21161770 21163214 THE1D-int 1627 - 0 1614 36033 313 12 15 329 1 2 53 8 234 28 102 43 572 1 0 25 chain 34291 chrX 155270560 + 21175094 21175520 LTR17 781 + 0 423 77224 56 1 0 100 1 0 171 1 0 96 chain 12036 chrX 155270560 + 21211002 21211150 L1PA4 6152 - 0 151 152049 13 0 3 135 chain 31601 chrX 155270560 + 21218578 21219004 MLT2A1 477 + 0 421 81485 162 14 11 28 0 3 6 4 2 129 1 2 42 4 0 36 chain 19513 chrX 155270560 + 21225437 21225781 L1PA15 4387 + 4033 4366 128617 71 1 0 23 4 3 54 2 1 16 4 0 15 2 1 21 5 6 4 1 0 19 5 2 45 3 1 13 0 3 25 1 0 10 chain 217140 chrX 155270560 + 21232861 21235685 L1PA8 5853 + 3058 5853 18047 152 23 4 175 14 12 203 0 1 265 0 1 32 8 7 197 3 0 296 8 9 597 2 0 555 1 0 44 2 0 132 2 1 19 2 1 92 chain 446560 chrX 155270560 + 21236741 21242578 L1PA5 6144 - 0 5206 8862 35 0 2 828 0 4 956 0 1 642 2 0 591 6 7 589 0 1 357 627 0 700 1 0 262 9 0 90 0 1 135 2 0 5 chain 8413 chrX 155270560 + 21240761 21240857 L1PA5 6144 - 506 602 168772 96 chain 43000 chrX 155270560 + 21240869 21241368 L1PA4 6152 + 5642 6143 65411 61 4 6 434 chain 214394 chrX 155270560 + 21246559 21248989 L1PA5 6144 - 6 2426 18203 108 12 0 1003 1 0 489 0 3 817 chain 83352 chrX 155270560 + 21248993 21249956 L1PA5 6144 + 2731 3711 42179 97 0 4 166 0 10 249 0 3 451 chain 3264 chrX 155270560 + 21250422 21250550 MLT1H 522 - 242 402 219698 19 76 108 33 chain 167844 chrX 155270560 + 21250983 21253257 L1PB1 5432 - 21 2261 22300 7 1 0 13 1 0 21 1 0 22 2 0 16 61 46 6 1 0 43 1 0 16 2 1 49 31 24 9 1 0 24 3 0 9 1 2 51 1 0 5 0 1 359 4 7 54 3 0 122 1 0 239 8 9 344 0 1 183 2 0 247 0 2 5 4 1 147 0 1 154 chain 8842 chrX 155270560 + 21258966 21259098 L1MA2 4263 + 3989 4113 166421 69 7 0 47 1 0 8 chain 23286 chrX 155270560 + 21272157 21272494 THE1B 368 - 23 368 114278 102 35 45 29 1 0 26 1 0 143 chain 56548 chrX 155270560 + 21280642 21281316 L1PA7 6471 - 4 678 54827 674 chain 96046 chrX 155270560 + 21281328 21282412 L1PA3long 6157 - 12 1086 37807 100 12 1 145 0 1 827 chain 63640 chrX 155270560 + 21282412 21283105 L1PA3long 6157 + 4391 5084 51047 693 chain 31386 chrX 155270560 + 21298153 21298658 L1PA11 4918 - 340 818 81843 11 2 0 13 1 0 15 48 35 16 1 0 14 11 9 57 2 1 12 3 2 65 6 0 228 chain 127619 chrX 155270560 + 21300303 21302125 L1PA11 4918 + 2700 4578 28666 76 0 3 144 13 17 101 0 1 416 16 51 151 1 0 197 0 1 14 16 52 8 0 1 17 0 1 113 5 6 194 0 1 66 11 6 56 2 1 12 3 1 58 11 9 14 1 0 14 68 54 11 2 0 11 chain 34972 chrX 155270560 + 21330409 21330906 MLT2A2 560 + 0 560 76225 169 46 47 92 6 38 41 0 30 143 chain 15304 chrX 155270560 + 21333044 21333219 L1PA3long 6157 + 5981 6157 140482 152 0 1 23 chain 115644 chrX 155270560 + 21336731 21338294 THE1B-int 1605 - 0 1605 32575 9 1 2 12 1 0 286 0 1 87 39 39 407 0 9 232 0 2 5 2 0 24 0 1 7 4 3 27 5 30 30 0 4 132 4 5 224 13 15 12 chain 4835 chrX 155270560 + 21344789 21344851 L1MA3 4352 + 91 153 196961 62 chain 100459 chrX 155270560 + 21348764 21349890 L1HS 6032 - 4072 5198 36639 1126 chain 80232 chrX 155270560 + 21352402 21353443 MER11C 1089 + 0 1074 43494 225 0 5 34 0 3 52 1 18 221 40 41 176 0 8 199 1 0 15 0 1 54 9 8 14 chain 3860 chrX 155270560 + 21353496 21353574 L1PREC2 3366 + 2972 3048 209461 26 19 17 33 chain 8728 chrX 155270560 + 21353615 21353736 MSTA 426 - 293 426 167038 20 4 16 97 chain 557034 chrX 155270560 + 21357583 21363836 L1PA3long 6157 + 0 6157 605 633 104 0 1686 0 1 845 0 1 1478 0 5 1358 1 2 148 chain 333832 chrX 155270560 + 21367711 21372328 L1PA11 4918 + 15 4578 12059 26 3 1 35 5 2 36 1 0 13 2 0 53 1 0 18 0 3 11 2 0 7 1 0 254 3 1 114 0 2 127 1 2 30 1 24 57 0 1 118 1 0 390 0 1 14 1 0 173 58 0 60 0 1 224 2 1 376 41 14 25 14 16 15 4 8 279 33 15 72 1 0 34 0 2 269 10 11 242 1 0 263 0 35 35 0 1 159 1 0 219 0 4 57 1 0 254 0 9 51 0 1 48 1 0 60 7 6 12 1 2 67 3 0 10 5 4 12 28 19 10 29 24 13 2 0 11 chain 69456 chrX 155270560 + 21375418 21376594 L1PA8 5853 - 120 972 48602 33 20 18 74 2 0 46 1 0 369 320 0 186 0 1 125 chain 78083 chrX 155270560 + 21376594 21377641 L1PA8 5853 + 3918 4884 44472 154 0 2 562 10 9 71 11 10 54 81 0 104 chain 17644 chrX 155270560 + 21410439 21410804 MSTA 426 - 20 426 133856 6 1 0 82 0 20 58 81 79 13 27 51 97 chain 12499 chrX 155270560 + 21431044 21431399 L1MB3 1562 - 10 345 150242 29 1 0 15 41 40 26 52 26 20 0 2 9 20 11 23 1 0 61 22 26 20 0 9 7 0 3 8 chain 97579 chrX 155270560 + 21432151 21433629 L1MA2 4263 - 307 1797 37404 13 0 8 2 8 0 127 6 5 5 2 0 120 16 15 32 0 3 41 4 1 17 5 0 133 7 18 128 0 5 21 1 6 88 7 8 161 3 4 84 4 3 90 2 1 120 46 41 11 0 1 87 0 4 16 1 0 4 0 1 66 chain 17361 chrX 155270560 + 21433714 21433900 L1PA5 6144 + 5944 6130 134624 186 chain 3640 chrX 155270560 + 21466825 21466871 MADE1 96 + 50 96 212961 46 chain 50822 chrX 155270560 + 21469420 21469976 L1PA3long 6157 + 5601 6157 58420 556 chain 123208 chrX 155270560 + 21479023 21480831 L1MA2 4263 - 215 2019 29975 41 0 2 39 1 0 9 2 1 36 1 2 112 14 12 132 2 1 75 6 2 17 2 0 389 0 2 5 14 12 68 24 23 124 0 6 31 7 0 68 1 2 30 0 5 100 5 0 129 21 20 55 1 0 137 0 3 40 0 4 70 chain 15957 chrX 155270560 + 21497249 21497569 L1PB4 2604 - 76 392 138495 111 8 9 22 2 0 3 40 0 16 1 4 8 2 5 14 10 6 24 0 34 11 0 1 48 chain 39088 chrX 155270560 + 21501231 21501711 L1PA5 6144 + 5681 6136 70620 237 25 0 218 chain 534257 chrX 155270560 + 21562709 21569482 L1PA7 6471 + 0 6459 3683 409 0 3 47 0 1 249 9 8 26 8 0 10 24 1 388 3 0 177 1 2 35 0 1 147 0 2 248 10 0 12 0 10 43 15 9 100 0 1 106 2 1 310 7 8 280 3 0 72 0 4 447 0 1 318 0 4 67 5 9 16 11 12 150 1 0 932 0 8 281 1 0 135 1 2 45 4 0 350 0 1 109 4 0 17 0 6 83 1 0 437 298 0 319 chain 15594 chrX 155270560 + 21588949 21589137 Tigger1 2417 - 1561 1748 139607 155 1 0 32 chain 10669 chrX 155270560 + 21589150 21589278 Tigger1 2417 - 1334 1462 157532 128 chain 119596 chrX 155270560 + 21590951 21592474 THE1C-int 1605 - 11 1605 31182 35 9 15 244 0 3 845 5 12 7 0 1 255 0 54 123 chain 19340 chrX 155270560 + 21622372 21622589 L1PA5 6144 + 5922 6139 129107 217 chain 122443 chrX 155270560 + 21645948 21647500 THE1B-int 1605 - 0 1589 30235 201 1 0 225 9 11 235 0 2 20 0 3 70 0 1 119 1 0 213 6 7 41 0 25 64 0 1 29 0 2 43 1 0 177 0 3 97 chain 26021 chrX 155270560 + 21647516 21647866 THE1B 368 - 0 368 99943 74 1 0 102 2 0 24 1 0 26 0 10 87 0 5 19 0 7 14 chain 2402 chrX 155270560 + 21667904 21667933 L1PA7 6471 + 5669 5698 234194 29 chain 67811 chrX 155270560 + 21667933 21668703 L1PA7 6471 + 5700 6470 49317 585 1 0 160 0 1 24 chain 28013 chrX 155270560 + 21687547 21687874 L1PA4 6152 - 0 333 92954 6 0 5 178 0 1 143 chain 81488 chrX 155270560 + 21704530 21705529 LTR13A 966 + 0 966 42978 125 0 1 11 12 0 6 21 0 241 1 0 582 chain 25204 chrX 155270560 + 21731505 21731871 THE1B 368 - 0 368 103714 56 7 6 64 1 0 12 1 0 16 12 13 32 1 0 135 0 5 29 chain 27000 chrX 155270560 + 21735218 21735559 THE1C 375 + 0 350 96284 134 0 4 74 2 3 87 0 4 44 chain 297243 chrX 155270560 + 21790344 21794580 L1PB1 5432 + 1418 5413 13569 98 9 5 293 45 8 260 1 3 168 8 7 29 0 7 204 4 2 82 5 4 186 0 8 155 7 17 246 5 6 267 26 6 123 2 0 124 1 4 388 0 1 338 42 41 128 3 0 455 16 8 14 165 0 11 1 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 12 75 61 17 1 0 21 1 0 13 1 0 9 chain 75750 chrX 155270560 + 21826068 21827080 MER11A 1151 - 0 1151 45621 51 0 2 7 7 6 224 1 34 7 0 1 16 1 0 56 0 4 52 6 9 123 1 0 12 12 13 90 0 1 54 0 1 94 8 5 111 0 99 79 chain 33882 chrX 155270560 + 21838147 21838578 L1PA8 5853 - 0 425 77804 93 1 0 19 2 1 28 0 2 21 1 0 10 1 0 71 2 0 46 1 0 40 1 0 94 chain 22246 chrX 155270560 + 21853358 21853666 MER4A 717 + 0 322 119137 122 7 0 44 0 23 73 3 1 59 chain 20951 chrX 155270560 + 21866532 21866803 AluY 311 + 32 289 124099 96 15 0 148 0 1 12 chain 2920 chrX 155270560 + 21867246 21867278 L1MC1 2226 - 42 74 226677 32 chain 24929 chrX 155270560 + 21880649 21880941 AluY 311 + 8 295 105164 12 4 0 87 2 0 18 0 1 169 chain 26659 chrX 155270560 + 21907513 21907826 AluYk4 311 - 3 311 97458 176 5 0 132 chain 21587 chrX 155270560 + 21912967 21913370 THE1B 368 + 0 368 121820 169 1 0 6 69 74 18 1 0 60 48 10 31 chain 5667 chrX 155270560 + 21914422 21914565 L1MB3 1562 - 88 207 188411 22 1 0 14 42 13 4 1 0 37 7 14 15 chain 35157 chrX 155270560 + 21917687 21918137 MLT2A1 477 - 0 477 75978 42 1 39 11 8 0 214 5 2 169 chain 236156 chrX 155270560 + 21935431 21938740 L1PB1 5432 - 335 3827 16970 29 1 0 264 0 1 141 0 1 34 3 0 239 1 2 6 1 0 197 303 0 384 0 3 64 10 11 90 0 484 181 0 1 123 1 0 10 8 6 279 1 5 55 8 0 302 0 2 68 18 19 25 0 1 285 0 2 9 1 0 57 0 1 111 chain 5162 chrX 155270560 + 21962106 21962170 Charlie13b 329 - 113 177 193431 64 chain 99607 chrX 155270560 + 21968578 21969848 L1PA8 5853 - 10 1286 36882 11 6 7 64 2 1 14 12 18 40 1 0 9 1 0 69 2 0 46 1 0 157 3 4 193 0 1 121 2 1 86 0 2 11 0 5 182 3 1 117 1 0 116 chain 40221 chrX 155270560 + 21971284 21971750 LTR15 485 - 10 479 69002 129 3 2 128 0 4 206 chain 54392 chrX 155270560 + 21997338 21998019 L1PA8 5853 - 20 695 56102 73 1 0 19 2 1 54 5 4 74 2 0 46 1 0 404 chain 7274 chrX 155270560 + 22008159 22008269 LTR45C 530 + 350 459 175627 30 11 10 69 chain 522754 chrX 155270560 + 22017566 22023705 L1PA6 6164 - 2 6164 4891 855 1 0 650 0 5 280 0 4 262 1 0 200 0 2 208 1 0 498 10 1 190 0 2 2181 0 17 139 0 3 91 8 7 8 0 4 95 1 0 460 chain 20601 chrX 155270560 + 22027562 22027829 L1MA4 2864 + 1268 1537 125292 236 3 5 28 chain 6245 chrX 155270560 + 22096775 22096853 MER58B 340 - 22 100 183214 78 chain 7457 chrX 155270560 + 22120486 22120614 L1MA2 4263 - 149 268 174412 8 1 0 47 9 2 22 5 4 36 chain 31701 chrX 155270560 + 22121797 22122264 L1PB2 3958 - 120 580 81325 63 2 1 5 3 0 16 21 19 55 2 1 10 0 2 49 1 0 70 2 1 53 5 10 32 3 0 11 2 0 62 chain 8365 chrX 155270560 + 22123939 22124054 Tigger4a 237 - 4 120 169048 56 1 2 58 chain 20406 chrX 155270560 + 22128255 22128508 MER6 865 - 0 255 125873 170 0 1 27 0 1 56 chain 12662 chrX 155270560 + 22128583 22128728 L1PA5 6144 - 12 152 149598 90 5 0 50 chain 48496 chrX 155270560 + 22134799 22135458 PABL_A 660 + 0 660 60112 45 23 23 59 1 0 151 0 1 130 0 1 151 9 8 8 0 1 82 chain 10156 chrX 155270560 + 22178199 22178326 THE1B 368 - 0 128 159820 56 1 2 70 chain 22843 chrX 155270560 + 22189214 22189549 THE1D 372 - 21 343 116380 152 23 21 6 0 4 36 0 4 53 19 0 46 chain 11620 chrX 155270560 + 22197451 22197790 L1PB1 5432 - 2 306 153806 4 1 0 4 1 0 4 1 0 14 2 1 11 1 0 22 1 0 23 3 1 11 17 9 18 32 19 8 1 0 42 21 19 27 5 10 15 2 0 9 5 1 14 1 0 10 1 0 8 chain 18066 chrX 155270560 + 22207194 22207470 L1MA2 4263 - 150 423 132684 43 0 1 11 7 0 93 2 1 6 1 0 22 3 12 5 4 0 79 chain 14528 chrX 155270560 + 22226020 22226182 L1PA6 6164 - 14 176 142800 162 chain 496696 chrX 155270560 + 22246857 22253417 L1PA7 6471 - 12 6465 7024 143 12 8 227 5 0 80 5 0 287 8 6 84 0 3 288 6 2 62 0 2 282 27 0 37 1 2 10 4 0 39 5 1 715 0 12 58 2 0 97 1 0 5 2 0 428 0 7 12 5 1 472 7 3 79 0 3 91 4 0 13 0 1 6 0 4 21 0 1 217 30 9 45 4 0 21 4 0 53 0 2 154 4 0 14 1 4 188 10 5 46 2 0 13 4 0 576 1 0 150 1 0 4 0 1 81 1 0 4 8 28 14 4 0 54 0 10 235 5 0 6 0 1 4 1 28 118 7 5 22 8 13 165 3 0 100 16 15 20 75 27 6 4 0 96 7 0 5 11 8 56 0 1 177 25 10 50 chain 498427 chrX 155270560 + 22256259 22262556 L1PA7 6471 + 5 6465 6930 191 16 15 107 21 191 240 0 15 17 1 5 114 4 27 154 1 0 48 11 9 69 1 0 7 0 2 15 4 0 214 4 0 542 0 1 360 1 4 286 25 8 66 4 0 170 15 3 9 0 3 10 2 0 78 5 0 559 0 4 288 8 4 637 0 4 58 4 0 266 2 1 150 1 0 347 1 0 311 0 3 91 1 2 34 4 0 258 1 0 303 9 0 8 0 8 144 chain 23886 chrX 155270560 + 22278501 22278787 L1PA7 6471 + 5982 6269 110983 154 0 1 132 chain 16046 chrX 155270560 + 22278797 22278991 L1PA7 6471 + 6273 6468 138222 35 0 1 159 chain 18726 chrX 155270560 + 22284833 22285090 MER47A 366 + 97 366 130890 38 5 12 96 1 6 117 chain 29897 chrX 155270560 + 22299416 22299733 AluYb8 318 - 1 318 85112 317 chain 10210 chrX 155270560 + 22305431 22305554 MER83B 357 + 194 317 159569 123 chain 14584 chrX 155270560 + 22306530 22306887 THE1C 375 + 0 351 142646 19 3 0 17 9 18 15 41 54 54 83 58 116 chain 102298 chrX 155270560 + 22306950 22308348 THE1C-int 1605 + 53 1557 36194 61 1 55 276 3 10 216 39 38 43 6 0 69 1 9 33 0 3 284 8 50 293 1 0 51 1 0 4 0 1 8 chain 3970 chrX 155270560 + 22366911 22366991 MER96 175 - 46 127 207834 35 22 23 23 chain 22244 chrX 155270560 + 22374858 22375220 THE1B 368 + 0 368 119150 125 4 1 36 5 0 10 2 1 25 46 61 109 chain 9576 chrX 155270560 + 22377478 22377597 L1PA5 6144 + 6018 6144 162712 69 0 2 37 0 5 13 chain 17064 chrX 155270560 + 22392495 22392698 L1PA7 6471 + 6265 6468 135416 203 chain 90012 chrX 155270560 + 22411752 22413389 L1PB1 5432 + 4108 5413 39644 407 302 0 8 0 4 100 1 2 85 1 0 90 32 31 268 3 0 10 9 8 15 1 0 6 3 2 12 18 12 52 3 1 14 0 1 34 0 1 10 44 31 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 9 chain 3205 chrX 155270560 + 22415142 22415210 MER5A1 166 - 11 78 220872 16 20 19 32 chain 25689 chrX 155270560 + 22420468 22420816 THE1B 368 - 0 368 101335 121 0 5 69 8 7 101 5 21 44 chain 200721 chrX 155270560 + 22450950 22453615 L1PBa1 4058 + 10 2750 19161 26 1 0 11 24 2 6 1 0 157 2 3 11 1 10 192 2 0 138 1 0 50 70 68 396 1 0 4 3 4 326 6 100 6 6 0 90 0 1 47 1 0 9 2 1 71 0 1 60 0 6 635 1 7 8 11 0 146 0 4 9 0 1 134 chain 279302 chrX 155270560 + 22457912 22462211 L1PB1 5432 + 1701 5402 14677 690 22 12 97 2 0 314 584 6 14 2 0 8 2 1 170 0 1 94 0 23 41 0 1 468 0 1 93 0 1 315 0 1 46 15 10 200 3 4 122 0 1 192 8 5 164 0 2 6 14 11 288 1 0 8 5 4 23 1 0 6 19 14 11 3 1 50 2 1 16 1 0 21 3 0 23 1 0 14 4 1 31 24 19 24 1 0 22 1 0 10 chain 42146 chrX 155270560 + 22459042 22459523 L1PA4 6152 + 5674 6152 66457 4 0 1 467 4 0 6 chain 24366 chrX 155270560 + 22464379 22464648 L1PA3long 6157 + 5885 6156 108288 264 0 2 5 chain 30677 chrX 155270560 + 22486459 22487006 L1MA8 2339 - 1474 2029 83075 57 7 4 105 15 16 100 0 3 5 0 4 46 5 4 7 0 2 28 0 13 7 35 20 12 1 2 72 22 26 12 1 0 10 chain 196207 chrX 155270560 + 22494219 22496971 L1PBa 3878 - 1082 3788 19484 90 11 0 54 6 0 9 32 38 145 1 0 177 0 1 151 0 1 33 0 1 118 0 3 156 1 2 182 25 53 121 1 5 111 1 0 358 8 7 171 0 4 270 12 11 50 2 0 6 1 3 223 7 5 24 1 0 45 92 22 45 2 1 10 chain 46864 chrX 155270560 + 22507185 22507730 L1PA7 6471 + 5760 6307 61338 282 0 2 263 chain 13737 chrX 155270560 + 22507737 22507888 L1PA7 6471 + 6314 6465 145476 151 chain 18741 chrX 155270560 + 22514899 22515256 THE1D 372 - 0 361 130851 33 0 1 100 1 7 29 74 79 32 8 12 5 3 0 19 9 0 44 chain 27361 chrX 155270560 + 22532422 22532774 L1PA8 5853 + 5508 5853 95071 56 1 0 45 3 1 69 1 0 14 1 0 47 2 1 22 1 0 90 chain 129042 chrX 155270560 + 22546078 22548053 L1PREC2 3366 + 1112 3041 28307 166 46 40 18 4 3 303 0 3 40 1 0 85 1 0 122 0 1 421 0 1 4 8 6 308 11 12 71 0 1 35 2 0 27 29 28 41 54 40 12 2 0 6 21 15 4 0 1 25 46 30 25 6 4 31 chain 78388 chrX 155270560 + 22548809 22549700 L1PA7 6471 + 5572 6467 44330 882 0 4 9 chain 13357 chrX 155270560 + 22566014 22566215 LTR38 553 + 167 411 146854 85 5 26 13 4 0 28 1 27 65 chain 49569 chrX 155270560 + 22582289 22582867 L1PA7 6471 + 5890 6469 59346 246 0 1 332 chain 20706 chrX 155270560 + 22583782 22584051 AluSp 311 - 23 297 124942 205 21 26 43 chain 27631 chrX 155270560 + 22597155 22597479 L1PA5 6144 - 3 327 93984 324 chain 62711 chrX 155270560 + 22597479 22598191 L1PA4 6152 + 5441 6152 51584 342 1 0 369 chain 7810 chrX 155270560 + 22599040 22599131 L1PA7 6471 + 5679 5770 172250 91 chain 41845 chrX 155270560 + 22599134 22599629 L1PA7 6471 + 5772 6269 66837 300 3 5 192 chain 14111 chrX 155270560 + 22599630 22599818 L1PA7 6471 + 6278 6463 144172 179 3 0 6 chain 132987 chrX 155270560 + 22624676 22626418 L1PA8 5853 + 4137 5853 27425 195 2 0 7 1 0 4 0 3 512 0 5 146 2 0 78 0 1 283 18 0 23 2 0 170 1 0 43 2 0 57 16 15 23 5 0 38 2 1 19 1 0 16 0 1 76 chain 533033 chrX 155270560 + 22627309 22633425 L1PA4 6152 + 7 6132 3847 29 1 3 15 0 1 152 8 8 262 0 9 42 4 0 321 1 4 137 0 1 644 2 1 565 0 2 962 0 1 17 1 0 75 0 5 1781 12 1 455 0 2 630 chain 23066 chrX 155270560 + 22637666 22638003 L1PA17 2846 + 2365 2693 115325 134 27 18 16 2 1 98 1 0 18 1 0 27 0 3 13 chain 187702 chrX 155270560 + 22676784 22678864 L1P1 4361 + 2126 4206 20272 716 0 1 1307 1 0 56 chain 528786 chrX 155270560 + 22694975 22701417 L1PA5 6144 + 0 6137 4328 135 23 49 294 2 1 65 2 1 351 1 0 273 9 0 708 0 9 109 0 1 1126 0 4 2635 333 0 376 chain 28809 chrX 155270560 + 22700721 22701037 AluY 311 + 0 311 89843 126 5 0 185 chain 8472 chrX 155270560 + 22741944 22742042 L1PA16 3655 - 1876 1974 168445 98 chain 243487 chrX 155270560 + 22746042 22749463 L1PBa1 4058 - 822 4048 16591 88 1 0 229 3 0 5 93 0 4 98 0 199 6 0 56 13 19 30 0 4 75 0 1 62 4 0 228 1 2 136 3 0 66 5 6 364 1 0 97 0 2 322 0 1 137 5 0 107 15 23 105 0 6 23 9 13 160 9 7 24 19 18 39 17 7 120 21 22 123 1 3 153 1 0 93 15 12 9 1 0 26 chain 23425 chrX 155270560 + 22787148 22787434 L1PA7 6471 + 6179 6458 113501 39 7 0 240 chain 61444 chrX 155270560 + 22788500 22789172 L1PA4 6152 + 5479 6151 52135 672 chain 17915 chrX 155270560 + 22789300 22789516 L1PB 1623 + 411 627 133069 74 1 0 104 0 1 37 chain 5449 chrX 155270560 + 22789527 22789585 L1PA4 6152 + 6085 6143 190533 58 chain 9606 chrX 155270560 + 22800559 22800739 L1MA8 2339 + 1996 2150 162564 13 1 0 86 45 21 8 1 0 26 chain 377734 chrX 155270560 + 22808849 22813655 L1PA7 6471 + 1961 6461 10823 678 1 2 1484 0 4 1493 0 2 187 325 0 510 0 2 7 0 10 121 chain 26245 chrX 155270560 + 22855560 22855837 AluYa5 310 - 12 289 99034 277 chain 535133 chrX 155270560 + 22884498 22890969 L1PA7 6471 + 0 6470 3577 117 1 0 294 0 1 589 0 1 249 0 19 864 0 2 21 0 3 468 42 14 245 8 12 197 0 4 403 1 0 494 6 0 13 0 5 472 0 1 44 0 1 344 1 18 128 0 1 359 25 1 237 1 0 672 23 23 7 0 1 146 chain 31543 chrX 155270560 + 22891265 22891636 L1PA8A 6298 + 5916 6289 81578 269 0 1 15 0 1 87 chain 19442 chrX 155270560 + 22899164 22899391 L1PA7 6471 + 6238 6465 128844 227 chain 7998 chrX 155270560 + 22918499 22918642 L1MA7 2200 - 263 397 171076 21 14 6 72 8 7 28 chain 108900 chrX 155270560 + 22924852 22926423 L1MA3 4352 - 0 1567 34461 22 6 2 14 1 0 26 1 0 5 2 1 46 0 1 19 0 5 6 0 1 4 1 0 15 9 8 52 52 35 406 0 1 155 1 0 48 10 15 58 1 0 4 8 9 437 0 9 83 0 1 79 chain 72593 chrX 155270560 + 22966994 22967835 L1PA7 6471 - 3 841 47223 7 4 0 587 0 1 243 chain 19477 chrX 155270560 + 22985849 22986152 THE1B 368 - 61 367 128724 67 2 1 9 7 6 10 0 4 10 7 10 14 10 8 167 chain 25906 chrX 155270560 + 22988062 22988467 THE1B 368 + 0 368 100403 44 0 15 109 2 0 108 75 25 67 chain 18365 chrX 155270560 + 22989804 22990097 L1MA2 4263 + 3812 4095 131892 104 6 5 31 15 13 93 15 8 29 chain 38785 chrX 155270560 + 22994143 22994702 L1PA15 4387 + 3635 4185 71033 162 18 16 20 5 1 6 0 1 49 2 0 42 1 0 26 4 0 146 1 0 18 13 17 46 chain 17773 chrX 155270560 + 23025663 23026027 THE1B 368 - 0 368 133498 25 0 1 30 1 2 7 2 0 51 11 10 12 20 22 7 0 3 29 1 0 48 57 58 63 chain 3662 chrX 155270560 + 23043094 23043134 MLT2D 439 + 397 437 212537 40 chain 62114 chrX 155270560 + 23087235 23088693 L1PA15 4387 + 373 1249 51845 72 2 1 168 6 9 5 3 0 66 7 6 53 586 6 88 0 2 7 2 0 393 chain 7499 chrX 155270560 + 23088862 23088976 MER75B 242 - 1 122 174167 23 1 2 58 3 9 29 chain 30376 chrX 155270560 + 23094459 23094775 AluYb8 318 + 0 316 83713 316 chain 35759 chrX 155270560 + 23122497 23122903 L1PA7 6471 + 6063 6470 75193 250 0 1 156 chain 60501 chrX 155270560 + 23146117 23147569 MER4E1 777 + 0 770 52577 199 685 0 265 1 2 69 0 1 11 3 4 219 chain 3421 chrX 155270560 + 23167113 23167153 MER58A 224 - 8 48 216754 40 chain 21259 chrX 155270560 + 23168056 23168312 AluY 311 + 43 309 122994 89 2 0 114 0 12 51 chain 30546 chrX 155270560 + 23175128 23175912 LTR7B 505 + 0 505 83346 59 0 1 33 1 0 15 0 10 56 367 78 26 0 2 85 1 0 76 11 10 54 chain 26239 chrX 155270560 + 23211565 23211870 AluY 311 + 3 309 99051 128 1 2 176 chain 102432 chrX 155270560 + 23221467 23222601 L1PA4 6152 + 5017 6151 36156 97 0 1 724 1 0 312 chain 75398 chrX 155270560 + 23231898 23232864 L1PA8 5853 + 4901 5853 45824 109 2 0 77 1 0 300 4 2 14 0 3 158 10 9 36 2 0 69 6 5 5 1 0 52 2 1 19 5 4 20 5 0 69 chain 14341 chrX 155270560 + 23241171 23241406 THE1D 372 - 0 264 143418 81 0 2 42 4 10 11 40 61 57 chain 3440 chrX 155270560 + 23247279 23247318 MLT1H2 457 + 102 141 216386 39 chain 15643 chrX 155270560 + 23252380 23252567 MER4A1 472 + 275 462 139456 187 chain 21253 chrX 155270560 + 23254949 23255190 AluSp 311 + 46 287 123008 241 chain 11090 chrX 155270560 + 23256450 23256633 MER4-int 2692 + 1 183 155847 10 1 0 25 2 0 63 1 0 4 1 2 13 9 11 54 chain 562915 chrX 155270560 + 23256633 23262663 L1HS 6032 + 0 6032 269 213 0 1 631 0 1 5186 chain 185631 chrX 155270560 + 23262692 23265485 MER4-int 2692 + 168 2665 20448 33 15 13 196 4 3 97 2 1 203 4 5 55 4 0 66 1 0 310 3 0 167 1 0 9 2 0 90 2 1 65 35 31 70 3 0 55 0 5 52 4 28 34 7 6 127 0 2 127 1 0 97 0 2 19 0 1 124 0 13 9 18 0 4 1 0 112 300 0 265 chain 347739 chrX 155270560 + 23274676 23279649 L1PA11 4918 + 3 4629 11673 39 2 0 36 4 1 36 0 2 11 2 0 52 1 0 32 2 0 6 2 1 71 0 9 35 0 1 10 5 10 56 0 1 71 0 4 306 10 11 164 0 2 559 355 12 88 0 2 182 4 1 389 9 5 44 1 0 4 0 1 277 1 2 234 0 2 424 0 1 279 7 10 180 6 7 17 0 1 514 0 13 95 0 4 11 5 0 65 2 1 12 1 0 68 2 0 14 1 0 10 57 45 11 6 5 8 2 0 11 47 33 18 chain 9536 chrX 155270560 + 23285625 23285743 Tigger3a 397 - 117 239 162907 97 0 4 21 chain 6007 chrX 155270560 + 23331331 23331400 Charlie1b 519 + 179 248 185182 69 chain 519592 chrX 155270560 + 23375790 23381904 L1PA6 6164 - 11 6164 5203 60 21 20 96 1 2 148 1 2 443 0 12 1653 5 6 92 0 1 97 1 0 331 0 1 863 0 1 830 0 2 140 0 23 763 1 0 102 6 5 460 chain 24940 chrX 155270560 + 23393401 23393698 AluYd8 298 - 6 298 105110 152 11 9 126 3 0 5 chain 3325 chrX 155270560 + 23416055 23416096 MIR 256 + 104 145 218474 41 chain 529631 chrX 155270560 + 23441435 23447562 L1PA4 6152 - 19 6152 4231 122 7 0 8 0 7 627 0 1 66 0 4 435 0 1 232 1 0 185 0 1 180 0 1 190 0 1 344 0 1 1181 1 0 1491 0 1 6 1 0 98 0 4 349 10 3 236 4 5 353 chain 6680 chrX 155270560 + 23450167 23450261 L1PA17 2846 + 2600 2692 179830 32 1 0 17 1 0 43 chain 30783 chrX 155270560 + 23456270 23456685 LTR7B 505 - 14 505 82895 10 0 3 36 2 1 54 0 1 24 1 0 82 0 2 25 7 69 66 0 10 108 chain 30352 chrX 155270560 + 23459923 23460486 L1PB1 5432 + 4898 5427 83771 205 5 3 8 1 0 15 6 5 13 1 0 11 15 9 52 1 0 62 1 0 15 71 53 21 1 0 14 0 2 5 1 0 13 7 6 12 2 0 5 chain 4527 chrX 155270560 + 23465833 23465884 5S 121 + 0 51 200477 51 chain 382574 chrX 155270560 + 23471846 23476649 L1PA4 6152 - 12 5089 10678 101 0 1 219 1 2 139 0 1 237 14 0 261 0 1 5 1 0 1304 0 1 222 0 1 178 0 8 209 0 4 42 1 2 116 0 165 1080 322 0 170 5 429 78 0 3 98 chain 36778 chrX 155270560 + 23476658 23477082 L1PA4 6152 - 5098 5522 73832 424 chain 3262 chrX 155270560 + 23477082 23477130 L1PA4 6152 - 5523 5568 219752 40 3 0 5 chain 44352 chrX 155270560 + 23477130 23477695 L1PA4 6152 - 5571 6150 63753 440 5 19 120 chain 5743 chrX 155270560 + 23484983 23485051 MER2B 336 + 6 74 187703 68 chain 3066 chrX 155270560 + 23490151 23490184 L1PA6 6164 - 3 36 223637 33 chain 312558 chrX 155270560 + 23491578 23495481 L1P3 4156 - 163 4156 12909 167 2 1 337 1 0 181 0 1 206 1 5 283 8 7 113 11 6 48 13 0 185 0 3 5 8 5 55 0 1 265 1 0 18 0 2 254 0 100 148 0 3 200 5 16 333 0 3 35 0 1 173 0 1 257 7 0 166 6 0 89 1 0 57 24 23 240 chain 29316 chrX 155270560 + 23499302 23499612 AluYa5 310 - 0 310 87457 310 chain 14659 chrX 155270560 + 23500288 23500458 L1P3 4156 - 3986 4156 142394 170 chain 8814 chrX 155270560 + 23502453 23502554 L1P3 4156 + 0 101 166585 101 chain 3543 chrX 155270560 + 23502791 23502831 U2 167 - 116 156 214663 40 chain 121306 chrX 155270560 + 23502832 23504274 L1PA7 6471 + 5026 6469 30599 52 0 1 540 5 6 698 0 1 135 2 0 10 chain 25574 chrX 155270560 + 23518085 23518408 AluYk4 311 - 1 311 101853 180 15 0 15 4 6 109 chain 31285 chrX 155270560 + 23524709 23525125 MER61B 427 + 6 427 82014 148 5 6 32 1 2 4 1 0 77 0 4 148 chain 13305 chrX 155270560 + 23528477 23528681 MSTA 426 + 216 426 147063 20 2 0 64 23 31 95 chain 85945 chrX 155270560 + 23535472 23536870 L1MA1 4479 - 328 1674 41178 9 1 0 35 2 0 29 1 0 37 5 8 50 8 0 4 1 0 27 3 0 5 1 0 59 1 2 27 1 0 13 4 0 20 1 0 71 6 5 11 2 0 21 4 3 40 19 0 157 1 2 126 4 2 72 5 0 53 4 0 12 1 0 8 0 1 25 1 2 37 4 0 20 2 0 66 0 4 34 4 8 50 15 13 25 1 0 64 24 23 61 0 1 4 chain 163464 chrX 155270560 + 23538248 23540133 L1PA4 6152 - 9 1868 22881 5 3 0 850 16 1 17 26 16 558 0 1 24 0 1 386 chain 38878 chrX 155270560 + 23540134 23540573 L1PA4 6152 + 3835 4274 70902 439 chain 96233 chrX 155270560 + 23540942 23542239 SVA_A 1864 + 533 1864 37754 23 1 40 20 16 14 33 4 7 95 0 2 36 2 0 50 1 4 31 1 0 4 5 42 125 5 3 72 41 0 10 1 0 24 3 0 74 6 4 599 0 4 15 chain 17854 chrX 155270560 + 23551811 23552013 L1PA3long 6157 + 5940 6142 133229 202 chain 29163 chrX 155270560 + 23560859 23561302 L1M1 2793 + 2245 2685 88234 26 0 2 6 9 13 16 1 0 16 0 1 43 0 3 48 25 15 100 1 0 94 1 0 57 chain 42326 chrX 155270560 + 23564873 23565579 L1MA3 4352 + 3684 4346 66236 51 2 0 172 0 1 180 81 48 44 6 5 73 2 0 24 2 1 5 1 0 13 16 15 5 2 0 9 2 0 16 chain 532838 chrX 155270560 + 23578778 23584903 L1PA5 6144 - 4 6144 3870 136 2 0 6 14 17 686 0 4 2422 14 0 622 0 2 964 1 0 129 0 3 177 0 1 166 0 6 449 1 0 215 1 15 120 chain 195043 chrX 155270560 + 23590021 23592779 L1PB1 5432 + 2726 5410 19582 294 0 1 419 0 2 156 1 0 46 0 8 69 61 17 224 2 1 246 7 3 147 10 5 11 0 10 247 5 1 267 2 1 88 39 41 31 12 16 6 4 0 20 1 2 9 5 0 24 1 0 6 1 0 14 5 1 9 7 5 45 24 22 4 1 0 35 2 1 16 5 0 11 9 1 18 34 29 15 1 0 22 1 0 12 1 0 6 chain 31374 chrX 155270560 + 23595066 23595575 L1MA2 4263 - 150 664 81865 9 1 0 34 22 16 89 11 9 85 1 11 54 13 10 71 2 3 60 1 0 26 1 2 5 0 6 24 chain 19830 chrX 155270560 + 23609940 23610231 THE1B 368 + 0 302 127714 169 1 0 21 38 50 62 chain 34984 chrX 155270560 + 23610342 23610734 THE1B-int 1605 + 40 432 76204 392 chain 13338 chrX 155270560 + 23610786 23610969 MSTA 426 - 237 426 146939 26 11 17 146 chain 39175 chrX 155270560 + 23613251 23613694 L1PA5 6144 - 2 445 70496 443 chain 25884 chrX 155270560 + 23623124 23623479 THE1A 353 + 0 353 100509 84 5 6 19 2 1 88 1 0 94 1 3 6 3 0 52 chain 27658 chrX 155270560 + 23637251 23637616 THE1B 368 - 0 368 94189 16 14 4 52 1 0 127 1 0 110 0 15 44 chain 13432 chrX 155270560 + 23641492 23641672 LTR39 781 + 48 227 146565 29 1 0 116 0 1 9 1 0 24 chain 3685 chrX 155270560 + 23649847 23649895 MSTA 426 - 26 74 212153 34 1 0 4 0 1 9 chain 12758 chrX 155270560 + 23651110 23651304 L1PB4 2604 - 127 316 149219 57 4 0 13 0 1 20 1 3 8 5 1 86 chain 25566 chrX 155270560 + 23662664 23662969 AluSp 311 + 1 300 101894 127 6 0 172 chain 520688 chrX 155270560 + 23664025 23669943 L1PA5 6144 - 4 6144 5084 673 1 0 1197 1 5 1107 1 0 295 1 208 669 0 1 1744 0 5 6 6 1 35 0 12 182 chain 24700 chrX 155270560 + 23675463 23675745 AluYc 301 + 15 300 106437 104 0 3 178 chain 76887 chrX 155270560 + 23677999 23678949 LTR5_Hs 974 - 0 974 45037 61 4 8 226 1 0 43 0 17 156 0 4 201 3 0 7 0 3 248 chain 19043 chrX 155270560 + 23683239 23683562 L1MA3 4352 + 3977 4278 129991 7 0 1 108 40 15 6 0 5 51 21 20 68 2 0 20 chain 3082 chrX 155270560 + 23692081 23692125 MER112 246 - 7 50 223302 11 1 0 32 chain 25751 chrX 155270560 + 23699065 23699356 AluYf4 310 + 1 289 101084 122 3 0 166 chain 5902 chrX 155270560 + 23707442 23707519 MER20 218 + 93 172 186167 63 1 3 13 chain 7625 chrX 155270560 + 23710711 23711000 MER21A 919 - 753 919 173381 10 12 0 10 11 9 50 142 33 54 chain 25583 chrX 155270560 + 23726363 23726676 AluSp 311 + 0 311 101808 48 11 9 254 chain 21127 chrX 155270560 + 23737620 23737923 MER1B 344 - 7 344 123467 55 13 14 201 11 44 23 chain 6287 chrX 155270560 + 23757406 23757486 MIR 256 + 89 169 182902 80 chain 13882 chrX 155270560 + 23759090 23759245 L1PA3long 6157 + 5999 6155 144976 134 0 1 21 chain 5102 chrX 155270560 + 23783563 23783626 MER41B 635 - 90 154 194063 33 0 1 30 chain 25748 chrX 155270560 + 23786950 23787262 AluSp 311 - 1 311 101094 178 2 0 132 chain 7350 chrX 155270560 + 23813939 23814092 LTR49 580 + 379 528 175093 5 0 1 44 49 44 55 chain 25201 chrX 155270560 + 23819858 23820154 AluSx4 309 + 1 297 103737 296 chain 16462 chrX 155270560 + 23828397 23828618 L1MB2 1706 + 1189 1406 137031 92 3 0 87 4 3 35 chain 25060 chrX 155270560 + 23869316 23869605 AluSg7 307 - 15 303 104508 166 1 0 122 chain 9187 chrX 155270560 + 23890663 23890886 L1MA3 4352 - 3 175 164620 18 3 0 3 1 0 10 2 1 29 1 0 5 2 1 23 2 0 24 6 0 39 38 2 17 chain 29724 chrX 155270560 + 23913324 23913772 L1PA8 5853 + 5395 5853 85743 136 5 11 20 1 0 45 3 1 23 0 1 22 1 9 15 21 19 43 2 1 19 2 1 30 0 2 60 chain 112566 chrX 155270560 + 23936205 23938100 L1M1 2793 - 353 2131 33512 7 3 0 51 1 2 49 0 2 190 45 33 203 1 5 40 5 8 77 22 26 79 4 0 39 1 3 145 0 3 39 0 1 165 1 0 6 5 0 17 4 0 37 0 4 16 14 13 50 4 0 111 52 0 16 1 0 101 1 0 6 6 4 22 8 0 31 1 0 8 3 0 22 66 44 21 2 0 4 2 0 11 48 35 32 chain 14103 chrX 155270560 + 23942775 23942941 L1PA4 6152 + 5985 6151 144206 166 chain 25463 chrX 155270560 + 23947256 23947551 AluY 311 + 15 311 102388 117 0 1 178 chain 52220 chrX 155270560 + 23947558 23948877 Tigger1 2417 + 701 2226 57488 363 0 8 112 321 295 55 13 14 37 277 500 141 chain 12450 chrX 155270560 + 23952692 23952830 L1PA5 6144 - 1 139 150462 138 chain 21245 chrX 155270560 + 23961986 23962250 AluSq2 311 + 0 266 123039 10 3 0 114 0 1 8 0 1 115 0 3 14 chain 4935 chrX 155270560 + 23967208 23967271 MER63C 923 + 43 106 195876 63 chain 19172 chrX 155270560 + 23983599 23984086 THE1B 368 - 0 365 129609 56 7 6 64 213 91 31 2 0 6 0 3 108 chain 120543 chrX 155270560 + 23984089 23985960 THE1B-int 1605 - 0 1605 30861 115 1 0 185 309 0 101 2 1 30 1 0 367 0 2 96 14 20 10 1 0 79 16 17 115 9 35 228 10 22 182 chain 25725 chrX 155270560 + 23990729 23991031 AluYk4 311 + 0 286 101194 131 16 0 155 chain 22387 chrX 155270560 + 23994586 23994960 THE1B 368 - 0 368 118553 75 1 0 92 5 1 28 8 6 23 0 4 27 23 5 25 23 38 44 chain 26683 chrX 155270560 + 24017430 24017728 AluYk4 311 + 0 298 97376 298 chain 12522 chrX 155270560 + 24060846 24061032 L1PA11 4918 + 4328 4508 150152 65 2 1 13 3 1 67 2 0 12 2 1 20 chain 141421 chrX 155270560 + 24067626 24069265 LTR12C 1709 + 0 1709 25916 812 0 40 259 1 0 8 3 1 65 0 28 11 0 4 147 0 2 214 1 0 118 chain 23623 chrX 155270560 + 24078801 24079088 AluSp 311 + 5 305 112448 168 0 13 119 chain 22285 chrX 155270560 + 24107639 24108551 Tigger1 2417 - 940 1250 118975 96 298 0 80 316 12 122 chain 3753 chrX 155270560 + 24133350 24133395 L1MEf 1413 - 719 763 211088 8 1 0 36 chain 2797 chrX 155270560 + 24143320 24143508 LTR40c 466 + 158 338 228787 21 142 134 25 chain 6171 chrX 155270560 + 24147168 24147239 L1MA8 2339 + 2009 2080 183790 71 chain 45807 chrX 155270560 + 24159170 24159982 LOR1-int 1871 + 422 1270 62224 158 19 22 30 6 0 63 2 3 23 99 147 21 3 1 5 1 0 106 3 0 36 0 1 48 1 0 3 1 0 7 1 0 4 10 7 23 1 0 90 1 3 47 chain 25343 chrX 155270560 + 24194157 24194446 AluSp 311 - 13 302 102996 289 chain 13472 chrX 155270560 + 24201623 24201840 Tigger4b 360 + 0 221 146444 106 28 33 24 2 1 57 chain 2874 chrX 155270560 + 24240922 24241001 MER101 471 + 187 266 227466 20 33 33 26 chain 10556 chrX 155270560 + 24245065 24245238 L1MA1 4479 + 4024 4183 158018 54 1 0 29 2 0 35 1 0 9 0 1 7 6 2 11 7 0 11 chain 25685 chrX 155270560 + 24270741 24271058 AluSp 311 - 2 311 101355 11 6 0 178 2 0 120 chain 41898 chrX 155270560 + 24282077 24282625 MLT2A2 560 - 0 558 66757 108 6 10 25 0 11 79 1 2 18 11 0 103 0 1 185 0 4 12 chain 3579 chrX 155270560 + 24313326 24313370 MER57B1 401 + 357 401 214004 44 chain 4888 chrX 155270560 + 24315064 24315180 MER5A1 166 - 40 160 196393 38 25 21 11 10 18 32 chain 16414 chrX 155270560 + 24327633 24327807 L1HS 6032 + 5858 6032 137168 174 chain 2608 chrX 155270560 + 24335169 24335327 MER20 218 - 57 216 231583 29 36 0 6 67 0 9 0 104 11 chain 4114 chrX 155270560 + 24339025 24339156 L1MC1 2226 - 744 873 205719 26 69 67 36 chain 21114 chrX 155270560 + 24342879 24343109 L1PA3long 6157 - 4 235 123517 150 0 1 80 chain 264731 chrX 155270560 + 24354646 24357554 L1PA4 6152 + 3232 6151 15456 898 0 7 1162 1 5 847 chain 11887 chrX 155270560 + 24362266 24362554 MER57-int 2662 - 23 277 152670 12 6 3 32 5 0 9 1 0 24 74 55 68 18 12 39 chain 15684 chrX 155270560 + 24376650 24376837 AluY 311 + 38 226 139316 94 0 1 93 chain 9685 chrX 155270560 + 24408110 24408233 MER3 215 + 86 215 162171 66 0 6 57 chain 6252 chrX 155270560 + 24416934 24417019 MER63D 473 - 357 440 183157 78 2 0 5 chain 121252 chrX 155270560 + 24438354 24440961 L1PA15 4387 - 30 2010 30618 28 5 0 14 6 4 41 6 3 50 2 1 10 4 0 21 3 2 53 1 0 25 2 1 172 1 0 40 3 1 17 0 1 46 22 14 54 0 1 254 934 319 16 3 0 395 1 2 261 0 16 61 0 1 56 chain 21968 chrX 155270560 + 24439260 24439563 THE1B 368 - 12 368 120360 63 1 0 7 0 43 41 2 0 22 9 8 4 1 0 109 0 15 44 chain 3038 chrX 155270560 + 24444575 24444607 LTR67B 553 + 70 102 224259 32 chain 3294 chrX 155270560 + 24448062 24448109 MSTA 426 + 355 414 219089 18 1 13 28 chain 9310 chrX 155270560 + 24450916 24451165 L1PA8 5853 + 5401 5647 75365 163 1 0 44 2 0 39 chain 42419 chrX 155270560 + 24451176 24451659 LTR15 485 - 1 485 66121 433 1 2 49 chain 7852 chrX 155270560 + 24451659 24451869 L1PA8 5853 + 5647 5853 75365 35 1 0 6 1 0 52 2 1 19 1 0 93 chain 23878 chrX 155270560 + 24460620 24460979 THE1B 368 - 0 368 111037 56 13 12 57 17 29 13 0 3 6 4 0 23 1 0 169 chain 27642 chrX 155270560 + 24470964 24471327 THE1B 368 + 0 368 94233 15 3 1 21 0 5 130 2 1 17 0 1 9 0 2 166 chain 4746 chrX 155270560 + 24472454 24472508 THE1B 368 - 314 368 197962 54 chain 5920 chrX 155270560 + 24479327 24479401 L1MA5A 2387 - 84 157 185989 8 1 0 65 chain 24472 chrX 155270560 + 24479926 24480216 AluSp 311 - 1 291 107692 290 chain 6940 chrX 155270560 + 24486457 24486572 MER20 218 - 92 205 177888 37 14 13 47 1 0 16 chain 20948 chrX 155270560 + 24489089 24489328 L1PA7 6471 + 6229 6467 124116 86 1 0 152 chain 6248 chrX 155270560 + 24588740 24588814 MLT1F1 559 + 462 536 183183 74 chain 42051 chrX 155270560 + 24596131 24596597 L1PA7 6471 + 5986 6452 66555 466 chain 8940 chrX 155270560 + 24620025 24620640 L1MC1 2226 + 1643 2188 165921 47 34 29 19 115 116 33 7 1 29 1 0 5 270 213 13 2 0 5 4 5 26 1 0 4 chain 8354 chrX 155270560 + 24630169 24630387 MLT1E1A 663 + 294 494 169102 33 10 1 25 1 0 21 52 53 43 20 11 13 chain 3587 chrX 155270560 + 24633027 24633082 MER5A 189 + 2 54 213871 27 4 1 24 chain 2998 chrX 155270560 + 24641516 24641549 L1PA6 6164 - 15 48 225055 33 chain 4484 chrX 155270560 + 24649712 24649759 MER6A 605 + 126 173 200979 47 chain 21410 chrX 155270560 + 24673992 24674270 AluSq2 311 + 40 308 122475 88 12 0 13 2 4 163 chain 20430 chrX 155270560 + 24708635 24709204 L1PB1 5432 - 43 497 125816 19 1 0 24 2 0 14 1 0 5 3 1 18 31 27 15 75 46 52 2 0 9 18 13 12 4 3 17 99 31 148 chain 136928 chrX 155270560 + 24726498 24728160 SVA_F 1814 - 0 1479 26658 627 1 0 10 1 0 166 1 0 48 0 15 61 195 0 552 chain 4034 chrX 155270560 + 24727413 24727459 SVA_F 1814 - 687 734 161911 38 0 1 8 chain 4444 chrX 155270560 + 24727473 24727593 SVA_F 1814 - 600 720 150765 120 chain 29949 chrX 155270560 + 24756048 24756363 AluYb9 318 + 0 315 84971 315 chain 3102 chrX 155270560 + 24801897 24801933 MER3 215 + 54 90 222882 36 chain 5048 chrX 155270560 + 24807431 24807643 L1M3 994 + 69 274 194649 6 1 0 25 5 0 16 7 5 16 85 84 26 6 9 10 1 0 8 chain 33573 chrX 155270560 + 24837768 24838211 L1PA8 5853 - 0 435 78280 93 1 0 19 2 1 39 26 23 70 2 0 44 1 0 146 chain 37721 chrX 155270560 + 24851085 24851722 L1PB1 5432 - 40 660 72526 23 1 0 18 1 5 13 2 1 9 2 0 10 38 26 7 1 0 44 1 0 15 2 1 47 37 35 23 5 0 9 2 3 20 0 4 307 chain 55327 chrX 155270560 + 24900552 24901440 L1PA16 3655 - 36 877 55506 16 5 0 7 38 28 169 5 1 9 44 10 57 4 9 23 2 0 81 6 5 205 1 4 25 10 13 35 1 0 24 11 10 110 chain 15310 chrX 155270560 + 24914458 24914733 MER30 238 + 6 238 140463 87 42 8 22 12 0 29 0 6 41 3 0 39 chain 25298 chrX 155270560 + 24924036 24924408 L1PB2 3958 + 3470 3838 103238 75 5 4 5 1 0 63 1 0 56 0 1 5 1 0 57 1 3 14 2 0 21 2 1 63 chain 199941 chrX 155270560 + 24926368 24928619 L1PA4 6152 - 0 2263 19216 14 0 12 204 0 4 26 1 0 120 1 2 1606 4 0 275 chain 3357 chrX 155270560 + 24930934 24930979 L1ME1 1623 + 1124 1169 217918 45 chain 34153 chrX 155270560 + 24992495 24992930 L1PA8 5853 + 5420 5847 77407 95 1 0 49 1 0 44 2 0 74 8 6 52 2 1 19 1 0 87 chain 28848 chrX 155270560 + 25081556 25081928 L1PA16 3655 + 3223 3590 89679 68 2 0 287 3 0 12 chain 43223 chrX 155270560 + 25091352 25091896 MLT2A2 560 - 4 560 65143 65 0 1 77 0 11 402 chain 9913 chrX 155270560 + 25107831 25107956 L1MA9 1812 - 1266 1390 161000 113 1 0 11 chain 114531 chrX 155270560 + 25109709 25111446 L1PA14 3548 - 101 1814 32938 32 1 0 19 1 0 4 2 1 12 10 8 28 5 1 11 1 0 110 1 0 22 3 11 51 1 0 5 3 1 17 4 0 109 2 0 5 2 0 58 7 4 24 1 0 153 10 11 62 1 0 25 7 8 119 8 7 157 35 34 51 3 0 6 0 3 113 0 2 149 15 16 30 0 1 171 12 2 37 5 6 17 chain 3216 chrX 155270560 + 25117631 25117669 MER58D 378 + 331 370 220644 32 0 1 6 chain 67333 chrX 155270560 + 25119981 25120725 L1PA4 6152 + 5409 6152 49517 596 1 0 147 chain 25282 chrX 155270560 + 25129078 25129473 MSTB 430 - 20 430 103305 88 10 15 61 49 60 170 1 0 16 chain 28299 chrX 155270560 + 25131038 25131407 MSTB-int 1649 - 1255 1623 91952 121 10 9 238 chain 499264 chrX 155270560 + 25135259 25141278 L1PA6 6164 - 2 6162 6874 8 3 0 493 2 0 346 1 0 178 4 5 304 5 0 6 0 5 452 0 8 711 0 1 23 0 2 430 0 1 749 0 3 112 3 0 315 0 1 1358 19 151 17 0 1 480 chain 83978 chrX 155270560 + 25167221 25168769 L1MA1 4479 - 328 1553 41911 9 1 0 33 4 2 28 2 1 115 1 4 7 5 0 5 1 0 88 1 0 13 4 0 6 4 6 8 1 0 71 304 0 16 1 0 4 1 0 21 1 0 46 0 1 38 0 1 52 1 0 56 3 0 131 3 0 72 2 1 53 7 0 12 1 0 34 0 1 36 0 13 10 7 5 167 17 15 12 8 7 25 chain 11053 chrX 155270560 + 25177373 25177508 L1PA5 6144 + 6015 6143 155999 120 7 0 8 chain 23104 chrX 155270560 + 25227059 25227396 L1PA16 3655 + 3300 3619 115120 277 36 19 7 1 0 16 chain 24485 chrX 155270560 + 25241366 25241767 L1PA14 3548 - 83 464 107632 10 6 0 41 1 0 22 1 0 14 4 2 26 1 0 9 14 9 111 1 0 70 0 5 6 1 0 3 1 0 6 2 0 13 5 3 5 2 0 26 chain 32939 chrX 155270560 + 25246605 25247133 L1MA2 4263 + 3585 4114 79307 19 0 4 50 6 8 124 20 16 150 11 9 39 19 28 20 13 6 47 1 0 9 chain 57721 chrX 155270560 + 25252061 25253228 HSMAR2 1300 + 447 1299 54125 78 16 14 29 23 19 204 1 0 4 1 0 129 5 8 46 1 0 4 302 0 57 6 0 36 1 0 12 6 5 179 0 1 27 chain 24473 chrX 155270560 + 25255273 25255544 L1PA5 6144 + 5858 6128 107686 174 1 0 96 chain 2997 chrX 155270560 + 25259843 25259877 MER5A1 166 + 87 121 225098 34 chain 30794 chrX 155270560 + 25268783 25269309 L1PA15 4387 - 31 539 82878 27 35 28 28 24 17 38 4 3 8 4 0 22 2 1 54 1 0 5 0 5 20 1 0 168 1 0 24 17 17 43 chain 28725 chrX 155270560 + 25269326 25269692 THE1B 368 + 0 368 90227 15 2 0 25 0 5 127 2 1 195 chain 22776 chrX 155270560 + 25274216 25274568 THE1D 372 + 0 372 116701 61 4 14 88 28 30 61 8 16 102 chain 8397 chrX 155270560 + 25303587 25303978 MSTD 398 - 78 398 168868 28 11 12 30 213 143 15 16 15 56 5 4 17 chain 33460 chrX 155270560 + 25315647 25316063 MER1A 529 - 0 436 78476 62 0 4 171 1 17 182 chain 125177 chrX 155270560 + 25320239 25321621 L1PA4 6152 + 4759 6140 29329 1139 1 0 242 chain 184296 chrX 155270560 + 25327245 25329960 L1PA15 4387 - 60 2774 20559 12 3 1 44 6 3 49 4 3 8 4 0 19 6 5 29 25 24 25 7 6 167 1 0 42 2 0 62 17 15 396 1 2 243 9 12 88 6 10 5 0 2 93 0 17 196 16 13 17 18 10 519 5 0 61 1 0 24 41 44 29 9 5 132 1 11 15 13 9 61 0 2 184 chain 363435 chrX 155270560 + 25329966 25334108 L1PA4 6152 - 0 6142 11277 139 0 7 20 14 7 806 0 1 2450 14 2014 132 1 0 566 chain 16331 chrX 155270560 + 25338033 25338234 L1PA7 6471 - 12 213 137399 155 1 0 5 1 2 39 chain 10895 chrX 155270560 + 25339873 25340076 L1PA15 4387 - 31 218 156609 27 25 18 41 6 3 50 3 2 7 4 0 23 1 0 16 chain 30075 chrX 155270560 + 25342518 25343289 L1MA8 2339 - 6 716 84579 34 54 34 8 1 0 10 0 2 8 12 10 8 0 5 3 5 0 13 15 9 26 4 0 32 60 40 27 76 77 18 0 1 9 7 5 25 6 0 40 0 2 47 4 0 178 24 22 17 chain 29282 chrX 155270560 + 25344769 25345289 L1PA11 4918 - 292 776 87647 14 48 34 11 2 0 13 1 0 15 48 35 16 1 0 16 2 0 66 3 0 12 2 1 43 3 4 204 chain 495199 chrX 155270560 + 25346790 25352305 L1PA3long 6157 + 629 6146 7114 1054 6 5 138 0 3 1433 2 1 2092 2 1 4 0 1 542 1 2 241 chain 237813 chrX 155270560 + 25353296 25356514 L1PA8A 6298 - 6 6258 16892 106 12 11 31 0 2 119 0 1 298 0 1 222 9 12 64 3 0 11 0 1712 171 0 3 47 1 0 89 8 5 21 2 0 397 0 4 413 1 0 42 11 0 175 0 1 13 0 3 487 0 1 4 0 1389 5 1 0 25 2 0 77 13 1 11 8 0 50 79 67 12 2 0 12 1 0 7 1 0 11 3 2 8 1 0 18 21 12 16 3 0 24 6 1 5 2 0 9 3 0 5 2 1 18 chain 8471 chrX 155270560 + 25358743 25358846 MSTB1 431 + 76 179 168453 103 chain 36832 chrX 155270560 + 25359424 25359918 MER9a3 513 + 15 513 73760 95 0 1 145 26 25 137 0 1 14 2 3 7 0 2 68 chain 13858 chrX 155270560 + 25360607 25360818 MER30 238 - 0 238 145037 105 11 30 7 0 3 46 12 17 30 chain 375007 chrX 155270560 + 25378364 25383585 L1PB1 5432 - 15 4834 10918 13 1 0 8 6 5 21 1 0 24 2 0 14 1 0 4 3 1 19 24 12 16 1 0 44 6 5 10 2 1 52 2 0 10 16 11 9 1 0 21 34 14 253 5 6 4 1 0 135 0 2 82 10 7 64 1 0 4 0 1 204 1 2 111 320 2 118 2 1 81 1 0 60 0 4 6 5 4 104 37 1 115 1 0 5 2 0 885 1 0 296 0 1 48 5 0 54 1 2 62 0 4 106 8 11 861 8 0 151 0 4 411 0 6 227 chain 115960 chrX 155270560 + 25393829 25395351 THE1C-int 1605 + 0 1591 32471 13 5 7 96 2 56 268 5 12 240 18 12 249 7 8 44 7 8 16 0 8 306 0 1 191 0 1 55 chain 43268 chrX 155270560 + 25426367 25426882 L1PA6 6164 - 10 527 65093 7 1 0 124 0 1 361 0 2 22 chain 217111 chrX 155270560 + 25434883 25437931 L1MA2 4263 - 205 3245 18050 93 19 17 139 3 0 107 0 6 29 6 5 26 1 3 9 1 0 31 15 11 91 1 0 107 0 2 57 1 0 357 0 1 57 1 3 210 5 0 53 1 0 232 6 2 440 18 21 47 1 0 7 3 0 6 26 29 15 0 3 68 2 0 94 1 2 14 1 2 7 13 0 59 8 0 108 1 2 19 0 1 8 1 2 51 0 5 82 0 8 158 0 1 97 1 2 34 chain 406080 chrX 155270560 + 25438495 25443961 L1PB1 5432 - 12 5371 9911 16 1 0 13 1 0 21 1 0 24 2 0 13 9 6 18 23 13 15 1 0 44 1 0 16 2 1 51 2 0 11 65 55 51 1 0 5 9 10 266 19 16 134 2 0 657 0 2 226 9 12 135 0 1 304 0 2 408 0 1 260 26 31 60 0 3 25 6 0 712 6 7 987 10 11 24 1 2 95 0 1 4 2 1 382 54 0 16 45 16 175 chain 26926 chrX 155270560 + 25467164 25467511 THE1C 375 + 0 350 96530 136 1 5 45 1 0 164 chain 27360 chrX 155270560 + 25467538 25467882 THE1C-int 1605 + 1 406 95078 13 3 4 98 0 54 157 0 6 73 chain 55009 chrX 155270560 + 25468199 25468842 L1PA7 6471 + 5822 6467 55699 244 0 2 149 2 1 28 0 1 220 chain 34457 chrX 155270560 + 25477342 25477773 MLT2A1 477 + 0 477 76985 142 0 1 26 0 4 151 1 0 61 3 45 47 chain 22095 chrX 155270560 + 25478548 25478916 THE1D 372 - 0 372 119814 159 0 2 18 18 25 36 30 34 51 16 7 40 chain 6513 chrX 155270560 + 25482415 25482502 MLT1B 390 + 282 368 181136 13 1 0 73 chain 21294 chrX 155270560 + 25485132 25485893 L1MA8 2339 - 75 475 122882 7 1 0 44 7 8 9 6 0 77 28 0 19 354 36 8 4 0 42 6 5 40 3 5 10 2 0 23 4 0 67 chain 56509 chrX 155270560 + 25502567 25503243 L1PA7 6471 - 4 681 54846 495 0 1 181 chain 21903 chrX 155270560 + 25515266 25515621 THE1B 368 + 0 368 120606 48 18 22 99 1 0 29 1 4 8 0 4 18 1 0 10 2 1 63 22 27 35 chain 55598 chrX 155270560 + 25519616 25520240 L1PA5 6144 - 669 1298 55361 180 0 5 444 chain 58740 chrX 155270560 + 25520240 25520897 L1PA5 6144 + 5484 6141 53557 657 chain 3190 chrX 155270560 + 25530990 25531029 L1MB2 1706 - 32 71 221098 39 chain 5950 chrX 155270560 + 25543567 25543642 MLT1F1 559 - 48 125 185679 29 0 2 46 chain 24304 chrX 155270560 + 25545635 25546007 THE1C 375 - 0 373 108638 25 1 0 79 16 20 43 4 1 20 13 14 171 chain 92964 chrX 155270560 + 25550800 25552059 HSMAR1 1287 + 1 1287 38667 29 12 15 26 0 4 70 0 3 6 0 5 116 0 3 88 25 18 52 0 6 122 1 5 14 0 3 35 0 1 122 3 0 20 1 4 244 0 1 229 0 1 44 chain 6787 chrX 155270560 + 25621128 25621221 L1PA16 3655 - 3526 3617 179061 78 2 0 13 chain 23262 chrX 155270560 + 25635275 25635640 THE1C 375 - 0 375 114375 133 4 17 19 40 38 119 1 2 33 2 0 14 chain 110589 chrX 155270560 + 25635648 25637174 THE1C-int 1605 - 8 1605 34055 43 6 19 152 5 7 70 10 0 130 10 12 141 0 2 270 7 1 143 2 0 3 1 0 148 4 11 53 0 6 130 9 10 69 0 54 86 16 19 18 chain 4987 chrX 155270560 + 25701005 25701064 MLT1B 390 - 280 339 195279 59 chain 155429 chrX 155270560 + 25709170 25711262 L1MA1 4479 - 2102 4240 23931 123 1 0 22 6 7 101 1 10 25 2 0 42 0 2 9 0 5 71 2 0 101 0 3 86 0 1 88 1 2 286 0 1 27 0 1 72 3 4 84 2 1 14 0 2 107 0 5 87 5 3 5 0 1 93 0 4 81 0 1 30 0 1 21 1 2 164 1 12 60 0 1 88 0 4 137 2 0 41 chain 22087 chrX 155270560 + 25720967 25721223 L1PA3long 6157 - 0 255 119854 17 1 0 238 chain 33483 chrX 155270560 + 25753063 25753433 L1PA4 6152 + 5781 6152 78435 36 0 1 334 chain 55634 chrX 155270560 + 25761326 25762353 MER57-int 2662 - 0 904 55345 7 2 0 30 3 0 27 120 94 68 18 12 88 30 27 109 17 10 57 77 1 224 3 0 101 0 2 33 0 1 13 chain 24621 chrX 155270560 + 25771379 25771755 MSTA 426 - 0 426 106876 71 0 4 20 23 31 60 9 14 19 0 8 39 1 5 26 0 21 108 chain 57316 chrX 155270560 + 25775932 25776633 L1PA7 6471 - 2 699 54329 5 2 0 5 3 0 139 7 0 6 0 7 174 1 2 359 chain 96813 chrX 155270560 + 25789417 25790540 L1P1 4361 - 3193 4315 37547 467 1 0 655 chain 315744 chrX 155270560 + 25790540 25794077 L1PA4 6152 + 2610 6152 12774 560 0 1 1285 0 3 509 1 0 809 0 1 229 1 2 143 chain 72385 chrX 155270560 + 25795121 25796394 L1MA2 4263 - 149 1402 47310 10 1 0 30 24 17 22 0 1 58 74 72 25 21 24 19 37 40 135 1 0 39 1 0 9 88 78 240 20 15 312 1 0 56 0 1 50 chain 48134 chrX 155270560 + 25821217 25821810 L1PA7 6471 - 1 591 60377 12 1 0 141 1 4 6 5 0 427 chain 29504 chrX 155270560 + 25821810 25822162 L1PA7 6471 + 5517 5879 86623 82 0 4 16 0 6 254 chain 93827 chrX 155270560 + 25822942 25824255 LTR12D 1347 - 0 1347 38406 265 1 0 30 4 3 27 4 0 131 0 1 174 1 18 130 18 49 186 98 29 45 1 0 37 6 66 24 1 2 130 chain 9277 chrX 155270560 + 25854201 25854307 L1MA4 2864 - 222 328 164174 106 chain 31378 chrX 155270560 + 25855659 25856538 L1PREC2 3366 + 2498 3242 81858 5 0 3 243 11 9 48 1 0 9 5 1 33 8 4 14 29 21 12 2 0 5 4 1 15 3 1 29 37 20 28 17 15 29 172 98 14 51 41 19 19 10 17 chain 77244 chrX 155270560 + 25879283 25880240 L1PB1 5432 - 294 1252 44852 23 5 0 9 3 4 41 0 2 43 0 1 39 0 1 267 1 0 130 0 1 189 0 1 207 chain 24877 chrX 155270560 + 25882147 25882454 AluY 311 + 0 302 105469 123 10 5 174 chain 26408 chrX 155270560 + 25898206 25898564 THE1B 368 + 0 368 98382 44 8 23 101 1 0 24 5 2 99 1 0 75 chain 250250 chrX 155270560 + 25900395 25903910 L1P2 5180 + 34 3503 16233 116 2 1 43 1 0 46 18 19 83 46 19 30 34 32 23 19 0 58 0 1 6 105 52 176 22 1 47 0 15 236 6 7 4 1 0 31 0 3 364 0 2 8 0 4 389 0 4 328 0 32 112 0 1 122 14 28 294 2 3 219 0 1 189 1 0 320 chain 39446 chrX 155270560 + 25905372 25905806 L1PA3long 6157 + 5724 6157 70100 168 1 0 265 chain 245990 chrX 155270560 + 25913970 25917773 HERVK22-int 3844 + 0 3430 16450 36 0 2 133 361 0 136 1 0 360 1 0 5 1 3 535 0 3 49 12 14 8 0 2 17 5 9 507 0 5 25 0 4 228 0 5 252 1 0 10 0 1 4 0 3 34 0 1 7 28 27 100 0 3 5 0 5 253 0 1 7 1 0 37 0 1 17 13 13 180 1 0 72 7 5 18 1 0 26 1 2 8 1 0 19 3 1 39 4 0 10 1 0 43 2 0 14 23 13 4 1 0 12 104 77 20 chain 29205 chrX 155270560 + 25914146 25914479 L1PA5 6144 + 5807 6144 88020 322 0 4 11 chain 136170 chrX 155270560 + 25923348 25924909 SVA_B 1603 + 6 1595 26803 13 35 25 772 0 40 54 14 10 28 0 1 203 0 1 442 chain 16421 chrX 155270560 + 25939851 25940034 L1PA3long 6157 + 5974 6157 137152 183 chain 29357 chrX 155270560 + 25947955 25948273 AluYb8 318 - 0 318 87256 318 chain 416716 chrX 155270560 + 25953263 25957935 L1PA4 6152 + 1462 6145 9614 2896 0 2 940 0 1 545 3 7 26 0 4 262 chain 10624 chrX 155270560 + 25983077 25983218 MER2 342 - 127 260 157711 51 8 0 82 chain 275595 chrX 155270560 + 25995569 25999581 L1PA10 4194 + 179 4161 14894 9 2 0 11 3 0 8 2 0 9 11 7 9 2 0 8 10 9 6 0 3 14 2 0 15 1 0 7 69 41 21 1 0 6 2 1 11 1 0 6 1 0 12 22 11 10 0 1 74 5 2 13 1 2 301 15 14 180 0 2 341 3 2 4 0 1 131 21 37 114 4 34 41 0 8 52 1 0 93 5 16 439 39 2 299 7 8 25 8 1 45 3 7 7 0 9 209 1 0 27 0 2 5 2 0 41 0 1 41 0 1 62 0 1 6 10 13 5 3 0 346 0 1 435 6 0 190 15 12 34 1 0 11 chain 78702 chrX 155270560 + 26000000 26000962 L1PA8A 6298 + 5327 6289 44184 163 4 1 201 0 2 496 4 5 94 chain 39422 chrX 155270560 + 26006398 26006829 L1PA3long 6157 - 0 431 70129 431 chain 114245 chrX 155270560 + 26006832 26008078 L1PA3long 6157 + 4484 5730 33013 1246 chain 27405 chrX 155270560 + 26023179 26024269 MER4A1 472 + 0 446 94952 25 1 0 59 1 2 14 8 10 120 23 45 39 674 6 126 chain 26401 chrX 155270560 + 26032520 26032876 THE1B 368 - 0 368 98409 75 1 0 101 2 1 15 3 2 115 0 15 44 chain 25664 chrX 155270560 + 26036727 26037092 THE1D 372 + 0 372 101435 119 9 13 34 6 10 13 6 5 178 chain 156190 chrX 155270560 + 26051401 26053193 L1PA5 6144 + 4351 6140 23834 301 4 0 35 0 1 5 1 0 225 0 2 374 1 0 846 chain 308473 chrX 155270560 + 26060012 26063621 HERV9-int 5642 + 15 4820 13071 68 26 1204 216 0 4 316 2 1 106 1 2 632 3 5 372 1 0 125 2 0 1691 0 15 48 chain 33767 chrX 155270560 + 26065330 26065837 LTR12F 595 + 0 595 77989 24 0 1 78 0 1 25 0 1 6 43 16 24 15 63 47 0 64 245 chain 24292 chrX 155270560 + 26071550 26071908 THE1B 368 + 0 368 108691 44 5 20 79 31 29 20 2 0 101 1 0 75 chain 5359 chrX 155270560 + 26082729 26082790 L1PA8 5853 - 17 78 191444 61 chain 55454 chrX 155270560 + 26087938 26088817 L1PA11 4918 - 415 4898 55434 15 2 1 15 2 0 57 3 1 8 5 0 6 0 1 4 2 0 58 5 6 98 4 3614 143 0 2 118 0 5 15 0 1 36 0 9 71 2 1 5 2 0 33 1 0 52 2 0 13 3 2 34 5 1 35 2 0 23 chain 5655 chrX 155270560 + 26106800 26107084 MLT1B 390 + 66 335 188512 30 199 184 55 chain 10746 chrX 155270560 + 26107870 26108002 L1PA7 6471 - 6 140 157219 7 0 2 125 chain 42374 chrX 155270560 + 26127908 26128378 L1PA3long 6157 - 3 473 66185 470 chain 72602 chrX 155270560 + 26131134 26131932 L1P1 4361 + 2411 3208 47215 766 1 0 31 chain 19986 chrX 155270560 + 26161245 26161564 MSTA-int 1630 - 6 335 127189 110 0 6 29 21 33 19 19 11 49 0 1 4 2 1 66 chain 4214 chrX 155270560 + 26170051 26170102 MADE1 96 + 45 96 204376 51 chain 21466 chrX 155270560 + 26173421 26173807 THE1D 372 - 4 372 122269 24 12 11 122 46 48 84 2 8 6 0 4 11 29 0 50 chain 3702 chrX 155270560 + 26185221 26185262 L1M1 2793 - 2091 2132 211903 41 chain 57292 chrX 155270560 + 26193203 26194629 L1PA5 6144 + 621 2019 8671 331 25 0 69 8 12 132 15 6 156 0 2 105 1 0 274 0 1 310 chain 514279 chrX 155270560 + 26194664 26200343 L1PA3long 6157 - 0 5689 5749 12 3 5 1255 0 4 523 0 4 163 11 11 3712 chain 165648 chrX 155270560 + 26200343 26204466 L1PA5 6144 + 2019 6139 8671 173 1 3 118 14 1 2030 0 4 520 0 4 1267 chain 26026 chrX 155270560 + 26211322 26211610 L1PA4 6152 - 9 297 99913 288 chain 118293 chrX 155270560 + 26222737 26224182 LTR12C 1709 + 0 1709 31692 338 0 43 83 0 1 185 0 119 58 11 10 271 1 0 12 2 0 104 0 4 168 0 102 129 1 0 82 chain 3602 chrX 155270560 + 26226893 26226931 MSTD 398 + 30 68 213613 38 chain 14779 chrX 155270560 + 26238562 26238901 MLT1B 390 - 45 369 142005 98 130 119 19 0 1 80 5 0 7 chain 42961 chrX 155270560 + 26261722 26262216 MER9a2 513 - 19 513 65461 494 chain 16152 chrX 155270560 + 26267674 26267883 L1PA7 6471 + 6262 6466 137893 59 10 7 131 2 0 7 chain 519180 chrX 155270560 + 26299437 26305530 L1PA6 6164 - 9 6164 5244 139 0 1 626 0 5 709 0 2 348 0 2 521 0 1 611 0 1 371 1 0 345 1 2 135 5 6 881 1 0 362 0 2 620 1 0 226 12 61 178 chain 52880 chrX 155270560 + 26316937 26317512 L1PA5 6144 + 5553 6128 57086 575 chain 567308 chrX 155270560 + 26332534 26338563 L1HS 6032 - 1 6030 70 6029 chain 8500 chrX 155270560 + 26340721 26340857 L1PA8 5853 + 5714 5853 168293 26 2 1 19 2 1 46 2 7 39 chain 516265 chrX 155270560 + 26352126 26358221 L1PA6 6164 + 0 6156 5551 418 2 0 5 0 2 84 4 3 275 0 17 1524 1 0 6 4 0 494 0 21 340 0 1 332 0 2 179 2 0 659 0 4 52 0 1 4 1 0 334 1 0 402 0 25 972 chain 28249 chrX 155270560 + 26363660 26363959 AluY 311 + 9 309 92112 123 0 1 176 chain 112201 chrX 155270560 + 26368748 26370297 THE1B-int 1605 - 0 1570 33610 120 21 0 85 0 1 409 0 35 15 13 0 138 10 7 31 7 16 81 5 10 207 37 20 27 0 1 204 0 24 139 chain 39204 chrX 155270560 + 26390863 26391475 MER41B 635 - 0 620 70449 12 1 2 55 27 32 25 46 47 335 8 9 103 chain 15277 chrX 155270560 + 26391500 26391699 MER41-int 2638 - 2 202 140552 182 1 2 16 chain 40021 chrX 155270560 + 26395862 26396331 L1PA5 6144 - 0 469 69286 469 chain 316586 chrX 155270560 + 26434227 26438339 L1P3 4156 - 27 4153 12739 14 2 1 7 2 0 576 0 1 40 0 2 55 0 1 178 0 1 156 0 4 222 1 6 227 0 1 510 0 1 376 1 0 15 0 1 137 0 3 243 0 1 124 1 0 4 1 2 258 224 0 8 1 225 325 1 0 84 1 0 68 2 1 248 chain 94400 chrX 155270560 + 26438343 26439472 L1PA7 6471 + 5344 6469 38234 19 0 1 5 2 1 251 2 0 18 0 1 103 0 1 570 1 0 140 3 0 15 chain 129700 chrX 155270560 + 26440362 26441770 L1PA4 6152 - 1 1409 28152 1408 chain 43097 chrX 155270560 + 26486480 26487019 MER41A 554 - 1 541 65292 264 4 5 81 1 0 4 0 1 185 chain 92027 chrX 155270560 + 26487044 26488553 MER41-int 2638 - 5 1200 38967 148 318 0 29 11 12 216 0 2 104 1 6 202 5 3 36 2 0 437 chain 19563 chrX 155270560 + 26502344 26502687 THE1B 368 + 0 353 128481 14 2 0 33 17 23 99 1 0 11 0 1 7 7 12 10 0 4 16 1 0 12 8 7 50 0 4 8 13 8 34 chain 10849 chrX 155270560 + 26505221 26505353 THE1D 372 + 239 372 156787 99 0 1 33 chain 117891 chrX 155270560 + 26507968 26509276 L1PA3long 6157 - 0 1395 31781 239 1 88 1068 chain 121944 chrX 155270560 + 26509276 26510632 L1PA3long 6157 + 3416 4776 30397 530 0 1 174 0 1 146 0 3 343 1 0 162 chain 28080 chrX 155270560 + 26515421 26515903 LTR12 884 + 0 677 92709 60 6 113 8 1 0 24 17 6 36 1 0 66 1 0 23 1 2 39 2 0 12 28 28 127 3 106 27 chain 404512 chrX 155270560 + 26516015 26520991 HERV9-int 5642 + 17 4825 9960 693 12 6 79 4 3 47 7 4 254 172 10 487 4 2 123 0 1 303 1 0 315 3 4 222 0 1 340 0 1 525 0 1 109 6 9 757 0 2 6 3 1 484 5 4 15 chain 10300 chrX 155270560 + 26538666 26538800 LTR8 732 - 1 145 159129 97 5 15 32 chain 30331 chrX 155270560 + 26540659 26541119 MER4A 717 - 275 707 83840 106 4 0 4 5 0 15 3 0 35 2 5 148 37 18 101 chain 49720 chrX 155270560 + 26546727 26547442 L1PA13 3608 + 2779 3482 59216 189 3 4 14 0 1 84 0 3 52 6 0 16 1 5 13 1 0 114 2 0 61 1 0 27 1 0 7 0 1 21 11 5 47 9 5 18 1 0 16 chain 28209 chrX 155270560 + 26570962 26571316 THE1B 368 - 0 368 92271 196 1 0 113 0 15 44 chain 3062 chrX 155270560 + 26614590 26614665 MER5A1 166 - 36 112 223788 32 27 28 16 chain 7529 chrX 155270560 + 26628609 26628695 L1PA5 6144 - 0 86 173981 86 chain 20585 chrX 155270560 + 26656481 26656869 THE1D 372 - 0 372 125346 147 1 0 17 39 42 38 18 17 20 7 11 6 3 0 21 18 0 53 chain 65998 chrX 155270560 + 26659493 26660413 L1PREC2 3366 + 1285 2202 50099 25 5 8 58 2 3 212 17 0 93 1 0 85 0 2 42 0 1 39 4 5 132 9 16 196 chain 29461 chrX 155270560 + 26664289 26664770 L1PA15 4387 - 20 482 86792 11 1 0 26 24 16 41 9 6 50 1 0 12 3 0 20 1 0 55 6 5 20 2 1 125 0 1 45 1 0 28 chain 104642 chrX 155270560 + 26691052 26692262 L1PA6 6164 - 3 1215 35581 144 2 1 10 3 4 687 1 0 185 0 3 178 chain 31764 chrX 155270560 + 26697639 26698085 MLT2A1 477 + 0 477 81226 169 4 1 11 0 1 17 1 0 4 0 2 180 10 0 10 3 45 37 chain 57629 chrX 155270560 + 26704304 26704948 L1P1 4361 - 293 937 54171 644 chain 46522 chrX 155270560 + 26704948 26705468 L1PA3long 6157 + 5629 6157 61579 377 0 3 137 0 5 6 chain 4113 chrX 155270560 + 26735281 26735331 HSMAR2 1300 - 781 830 205739 5 1 0 44 chain 24884 chrX 155270560 + 26743194 26743615 L1PB3 3668 - 54 446 105441 15 8 4 12 1 0 14 7 3 37 4 2 24 1 0 8 1 0 13 20 4 76 10 11 100 1 0 69 chain 215763 chrX 155270560 + 26748744 26751299 L1PA7 6471 - 10 2572 18123 437 0 1 321 0 2 79 1 0 949 7 11 282 0 1 156 0 1 128 1 0 194 chain 26153 chrX 155270560 + 26755763 26756115 THE1B 368 - 0 368 99393 159 1 5 12 2 0 23 1 0 99 11 26 44 chain 23138 chrX 155270560 + 26758913 26759262 THE1C 375 - 14 373 114951 12 1 0 29 2 1 121 11 5 11 0 3 5 1 2 89 8 22 59 chain 15777 chrX 155270560 + 26762278 26762463 MER4E 760 - 8 197 139029 157 0 4 28 chain 17837 chrX 155270560 + 26770238 26770447 AluYk4 311 + 88 297 133282 209 chain 23999 chrX 155270560 + 26772662 26772950 AluSp 311 - 15 303 110334 288 chain 51898 chrX 155270560 + 26773788 26774521 LTR17 781 - 0 781 57686 12 0 1 35 1 23 107 0 49 14 23 21 46 9 6 43 2 1 96 1 0 177 19 2 148 chain 52833 chrX 155270560 + 26774944 26775535 LTR10C 591 + 0 591 57116 34 2 0 476 0 2 79 chain 29104 chrX 155270560 + 26777038 26777414 MER57B1 401 - 23 400 88534 185 0 1 141 0 1 4 1 0 45 chain 29765 chrX 155270560 + 26792562 26793044 L1PB3 3668 + 3157 3610 85589 133 1 0 101 1 0 84 25 7 18 0 1 22 8 6 37 7 3 13 1 0 13 7 4 11 chain 120140 chrX 155270560 + 26797068 26799207 HUERS-P3b-int 2065 - 34 2048 31012 62 6 10 13 6 5 49 14 21 40 19 16 12 3 1 73 3 1 90 1 0 24 29 25 38 2 0 34 25 2 44 1 0 263 0 1 259 191 189 181 19 16 68 0 1 113 2 0 25 13 12 29 86 8 7 4 0 27 10 0 96 21 23 59 1 0 77 chain 22059 chrX 155270560 + 26813486 26813740 AluSp 311 - 49 303 119968 254 chain 11645 chrX 155270560 + 26820120 26820300 MER5B 177 - 1 177 153716 98 17 14 5 0 1 15 2 0 43 chain 141046 chrX 155270560 + 26885473 26887029 L1PA4 6152 - 6 1569 25976 142 1 8 1413 chain 108673 chrX 155270560 + 26890958 26892341 LTR12C 1709 - 0 1709 34520 296 0 4 181 9 13 93 8 6 4 1 0 92 1 3 23 0 278 247 4 5 80 5 48 53 33 30 253 chain 36341 chrX 155270560 + 26897510 26897972 MER4A1 472 + 0 458 74446 235 12 9 16 6 5 193 chain 50206 chrX 155270560 + 26898171 26898802 PABL_A 660 - 0 660 58862 76 9 19 39 4 5 428 0 9 37 0 9 38 chain 128844 chrX 155270560 + 26899273 26901103 PABL_A-int 1935 - 21 1836 28350 16 11 5 9 1 0 5 15 9 16 2 0 18 1 0 109 1 0 212 15 16 42 0 2 467 1 0 100 0 3 191 2 1 132 12 11 81 10 11 46 1 3 70 1 0 11 0 1 31 1 0 37 8 9 111 8 6 28 2 0 6 chain 48388 chrX 155270560 + 26903848 26904441 PABL_A 660 - 57 660 60190 482 16 17 14 0 9 81 chain 12426 chrX 155270560 + 26921709 26921841 L1PA3long 6157 + 6025 6157 150547 132 chain 114167 chrX 155270560 + 26929060 26930567 THE1B-int 1605 + 0 1599 33042 273 0 6 22 1 0 48 1 2 35 9 73 165 6 10 217 7 4 99 0 16 172 11 15 231 2 1 189 0 1 6 0 1 13 chain 12414 chrX 155270560 + 26950257 26950619 THE1B 368 - 0 368 150580 39 24 23 56 163 170 80 chain 14664 chrX 155270560 + 26950620 26950820 MER50 708 + 456 686 142375 36 6 12 9 0 24 149 chain 14581 chrX 155270560 + 26957957 26958118 L1PA4 6152 - 279 440 142655 161 chain 8410 chrX 155270560 + 26958119 26958215 L1PA5 6144 + 6043 6139 168788 96 chain 10302 chrX 155270560 + 26980664 26980962 L1MA8 2339 - 143 436 159123 36 6 3 34 68 39 45 29 55 25 6 7 24 4 0 14 0 4 7 chain 32363 chrX 155270560 + 26994722 26995164 L1PA8 5853 + 5418 5853 80250 146 2 1 43 2 0 71 1 0 5 17 16 40 2 1 21 1 0 91 chain 6186 chrX 155270560 + 27000000 27000067 AluSq2 311 + 216 283 183693 67 chain 25372 chrX 155270560 + 27004131 27004425 AluSp 311 - 16 311 102822 249 0 1 45 chain 72669 chrX 155270560 + 27014865 27015968 L1PB 1623 - 37 1088 47184 11 2 0 22 66 43 8 4 0 14 10 6 28 2 1 7 1 0 44 0 4 88 25 6 493 7 5 271 chain 75615 chrX 155270560 + 27015972 27017000 L1PB1 5432 + 4079 5103 45705 133 2 1 198 2 1 4 0 1 54 0 4 29 18 17 108 7 1 167 2 1 130 0 1 174 chain 63337 chrX 155270560 + 27020158 27020974 LTR12 884 - 0 884 51304 229 23 22 24 4 5 206 0 22 38 0 1 18 2 43 101 0 4 171 chain 32055 chrX 155270560 + 27039527 27039907 L1PA6 6164 - 2 382 80769 380 chain 27347 chrX 155270560 + 27039913 27040225 L1PA6 6164 - 8 320 95123 312 chain 57485 chrX 155270560 + 27041146 27041781 L1PA3long 6157 - 749 1434 54251 424 0 50 211 chain 67144 chrX 155270560 + 27041781 27042515 L1PA3long 6157 + 5423 6157 49589 734 chain 5303 chrX 155270560 + 27060923 27060995 L1MCa 1829 + 806 875 191987 20 4 1 48 chain 9860 chrX 155270560 + 27095700 27095813 L1PA8 5853 + 5741 5853 161288 19 1 0 93 chain 22805 chrX 155270560 + 27110443 27110745 AluSp 311 + 0 298 116554 31 12 11 251 3 0 5 chain 3395 chrX 155270560 + 27120513 27120552 L1MB2 1706 + 1654 1693 217171 39 chain 132042 chrX 155270560 + 27127104 27128535 L1PA2 6032 - 2 1432 27628 450 1 0 980 chain 55611 chrX 155270560 + 27128535 27129167 L1P1 4361 + 2820 3453 54803 358 0 1 274 chain 6455 chrX 155270560 + 27133451 27133529 MER11A 1151 + 154 230 181604 45 2 0 31 chain 4031 chrX 155270560 + 27141794 27141842 AluJr 308 + 36 84 206899 48 chain 113868 chrX 155270560 + 27148241 27149755 THE1B-int 1605 - 8 1587 33127 651 8 19 107 0 1 109 39 22 167 1 0 5 1 2 53 0 64 117 1 7 255 chain 54062 chrX 155270560 + 27164754 27165401 L1P1 4361 + 3697 4341 56313 451 1 0 156 2 1 23 2 1 12 chain 24607 chrX 155270560 + 27166570 27166852 AluSp 311 - 18 300 106957 282 chain 145386 chrX 155270560 + 27174939 27177085 LTR12C 1709 + 0 1709 25270 265 1 2 161 8 9 400 1 0 273 440 0 7 3 1 106 0 4 481 chain 14560 chrX 155270560 + 27176048 27176210 LTR12C 1709 + 950 1112 106354 162 chain 23826 chrX 155270560 + 27176214 27176488 LTR12C 1709 + 837 1111 110850 274 chain 18334 chrX 155270560 + 27185346 27185544 L1PA3long 6157 + 5959 6157 131977 198 chain 118575 chrX 155270560 + 27214807 27216319 L1P3 4156 + 3 1516 31592 239 31 30 48 1 0 352 16 17 15 10 10 260 9 8 276 0 15 3 15 0 118 0 3 119 chain 74516 chrX 155270560 + 27216323 27217177 L1PA7 6471 + 5614 6470 46265 397 0 3 301 0 1 146 2 0 8 chain 42687 chrX 155270560 + 27226225 27226711 L1PA4 6152 + 5656 6143 65793 339 8 9 139 chain 83748 chrX 155270560 + 27242777 27243707 L1PA3long 6157 - 8 942 42015 835 0 4 95 chain 175142 chrX 155270560 + 27243707 27245631 L1PA3long 6157 + 3270 5194 21443 1924 chain 121252 chrX 155270560 + 27257701 27259266 THE1B-int 1605 + 0 1594 30619 25 3 0 5 1 4 398 13 38 9 1 2 653 6 10 200 1 0 250 chain 15456 chrX 155270560 + 27281232 27281409 L1PA4 6152 - 2245 2422 140032 177 chain 201649 chrX 155270560 + 27281409 27283639 L1PA4 6152 + 3913 6136 19094 916 7 0 1307 chain 529492 chrX 155270560 + 27317339 27323800 L1PA7 6471 + 0 6469 4245 392 1 2 18 1 0 470 15 0 50 0 7 90 0 14 388 2 1 99 0 1 427 1 0 36 4 0 711 0 4 123 0 2 662 1 0 79 0 3 105 4 3 39 3 11 85 17 7 648 0 4 36 0 1 248 0 3 180 1 0 129 7 17 7 6 0 103 1 2 409 1 4 674 20 7 168 chain 38661 chrX 155270560 + 27328009 27328446 L1PA4 6152 - 289 727 71212 107 5 6 325 chain 10207 chrX 155270560 + 27328450 27328562 L1PA4 6152 + 6039 6151 159584 112 chain 23345 chrX 155270560 + 27340822 27341069 L1PA2 6032 - 0 247 113957 247 chain 49879 chrX 155270560 + 27393729 27394299 LTR10C 591 + 0 591 59100 37 0 19 452 0 2 81 chain 79117 chrX 155270560 + 27460016 27461006 LTR13 1007 - 0 996 43991 31 2 1 26 0 1 25 0 4 100 3 4 119 0 2 308 4 5 308 2 0 62 chain 27400 chrX 155270560 + 27468662 27469031 THE1C 375 + 0 375 94970 118 0 1 23 7 11 32 9 10 180 chain 22626 chrX 155270560 + 27471827 27472079 L1PA4 6152 + 5639 5891 117450 252 chain 133479 chrX 155270560 + 27475986 27477677 SVA_A 1864 + 19 1864 27327 74 0 11 454 0 1 93 40 0 39 41 1 36 0 39 118 1 0 23 3 0 107 3 0 41 3 110 78 3 0 3 0 74 24 0 16 486 7 3 14 chain 2530 chrX 155270560 + 27476608 27476647 SVA_A 1864 + 763 802 79500 39 chain 2659 chrX 155270560 + 27476686 27476727 SVA_A 1864 + 841 952 79500 27 10 80 4 chain 10951 chrX 155270560 + 27517288 27517593 L1MA9 1812 - 260 536 156394 12 4 2 14 1 0 34 38 20 13 1 0 36 10 6 27 1 0 17 58 56 39 chain 24610 chrX 155270560 + 27541740 27542040 L1PA5 6144 - 1 304 106933 10 1 4 289 chain 324099 chrX 155270560 + 27542041 27545773 L1P1 4361 - 612 4357 12433 1552 0 2 258 0 2 139 0 1 414 0 1 1098 4 5 252 0 6 15 chain 89321 chrX 155270560 + 27559999 27561631 L1PA16 3655 - 93 1438 39877 19 29 27 101 1 0 58 21 16 37 16 14 86 1 0 202 0 1 70 283 0 9 1 0 24 21 19 205 15 14 109 5 8 217 6 13 7 5 0 18 0 6 49 1 0 16 chain 25857 chrX 155270560 + 27560650 27560923 AluYa5 310 - 2 275 100621 273 chain 19562 chrX 155270560 + 27586801 27587019 L1PA4 6152 - 12 230 128485 218 chain 42288 chrX 155270560 + 27595691 27596250 L1PA10 4194 + 3609 4163 66286 64 0 1 139 0 1 269 3 0 33 3 0 34 1 0 13 chain 3794 chrX 155270560 + 27604545 27604595 MADE1 96 + 45 96 210471 18 0 1 32 chain 37828 chrX 155270560 + 27616384 27616902 HERV1_LTRb 511 + 0 500 72369 14 0 1 70 28 13 248 4 0 109 1 0 5 1 2 38 chain 294302 chrX 155270560 + 27629575 27633014 L1PA6 6164 - 12 3446 13746 22 36 0 6 0 36 393 0 1 316 5 3 523 2 0 59 2 1 149 1 0 396 1 0 1057 0 1 471 chain 22992 chrX 155270560 + 27640296 27640566 AluY 311 + 37 303 115657 244 1 0 10 3 0 12 chain 11028 chrX 155270560 + 27658073 27658213 L1PA5 6144 - 16 158 156098 52 7 9 81 chain 12040 chrX 155270560 + 27658214 27658346 L1PA5 6144 + 5813 5945 152026 132 chain 83961 chrX 155270560 + 27663172 27664258 L1PA10 4194 + 3070 4160 41919 317 0 2 88 0 3 145 2 0 63 4 6 135 0 1 252 7 9 26 3 0 33 1 0 10 chain 26366 chrX 155270560 + 27674981 27675356 MLT2A1 477 + 0 470 98555 160 22 20 24 0 1 4 0 71 105 21 46 39 chain 4374 chrX 155270560 + 27685027 27685100 MER5A1 166 - 1 73 202276 34 10 9 29 chain 46594 chrX 155270560 + 27687594 27688145 L1PA5 6144 - 0 553 61535 147 23 25 381 chain 43813 chrX 155270560 + 27711749 27712315 L1PA16 3655 + 3013 3578 64434 187 2 1 377 chain 17269 chrX 155270560 + 27726235 27726517 L1PA16 3655 - 36 307 134869 16 5 0 7 32 18 72 9 17 141 chain 27237 chrX 155270560 + 27738492 27738789 AluYb8 318 - 21 318 95472 297 chain 14280 chrX 155270560 + 27771614 27771989 MSTB 430 - 15 392 143618 48 0 3 5 163 171 13 9 0 137 chain 537406 chrX 155270560 + 27776702 27782849 L1PA5 6144 + 4 6132 3254 543 0 1 175 8 9 86 1 18 163 1 0 380 0 1 230 1 0 698 8 0 2280 0 1 770 2 0 63 29 0 703 0 1 6 chain 11998 chrX 155270560 + 27783966 27784239 LTR1 825 - 46 299 152204 18 108 89 136 1 0 10 chain 27936 chrX 155270560 + 27817195 27817506 L1PA4 6152 + 5832 6143 93215 311 chain 31010 chrX 155270560 + 27819163 27819526 L1P1 4361 + 1 398 82493 302 0 34 61 chain 52423 chrX 155270560 + 27819526 27820107 L1PA4 6152 + 5571 6152 57337 581 chain 96257 chrX 155270560 + 27827073 27828549 LTR12C 1709 + 0 1709 37746 284 8 0 7 1 11 29 5 48 82 204 0 9 1 8 171 0 280 179 1 0 10 2 0 106 14 7 165 0 102 129 1 0 36 1 15 31 chain 3024 chrX 155270560 + 27867498 27867748 L1MCa 1829 - 393 647 224489 26 3 0 5 180 190 5 3 0 28 chain 50151 chrX 155270560 + 27875213 27875852 LTR12_ 688 - 15 688 58906 104 0 8 123 1 2 132 0 1 132 5 4 21 0 25 121 chain 4201 chrX 155270560 + 27883999 27884061 L1MA7 2200 + 2050 2105 204522 39 7 0 16 chain 4031 chrX 155270560 + 27912422 27912467 MER20 218 - 143 188 206904 45 chain 71061 chrX 155270560 + 27945716 27946491 L1PA2 6032 + 5252 6027 47904 775 chain 27883 chrX 155270560 + 27966710 27967075 L1PA8 5853 - 0 358 93415 93 1 0 19 2 1 52 2 1 8 2 1 70 2 0 46 1 0 67 chain 20582 chrX 155270560 + 27971230 27971695 L1MA8 2339 - 71 486 125355 11 1 0 24 2 0 14 0 5 6 5 0 10 15 1 37 63 41 19 22 20 71 1 0 51 4 0 17 9 7 5 2 0 76 chain 48510 chrX 155270560 + 27973298 27974012 MER4-int 2692 + 373 2692 60097 14 12 1 33 0 1 119 13 1641 5 0 2 67 5 0 18 0 1 4 7 0 7 2 0 144 3 0 255 0 1 6 chain 2508 chrX 155270560 + 27977927 27978129 L1PA8 5853 - 0 188 135042 9 3 0 81 4 3 13 10 8 51 18 10 13 chain 78109 chrX 155270560 + 27978135 27979187 MER11B 1079 + 0 1049 44460 354 21 24 47 12 11 305 10 0 25 1 3 51 5 6 41 0 1 16 4 5 160 chain 1167 chrX 155270560 + 27979218 27979312 L1PA8 5853 - 188 280 135042 57 2 0 35 chain 55469 chrX 155270560 + 27981682 27982287 L1PA4 6152 - 16 621 55430 605 chain 55687 chrX 155270560 + 27983204 27984202 MER11B 1079 - 5 1079 55315 24 2 1 176 0 1 4 0 1 41 0 1 29 0 2 7 27 29 17 10 0 23 1 0 45 187 177 22 18 17 31 0 1 279 0 91 55 chain 5047 chrX 155270560 + 27992184 27992246 LTR16B2 458 - 20 82 194665 62 chain 4392 chrX 155270560 + 28013222 28013276 MER58B 340 + 286 340 202052 54 chain 15861 chrX 155270560 + 28017699 28017935 MER30 238 - 0 238 138775 100 3 0 6 4 8 82 17 0 8 0 18 16 chain 123852 chrX 155270560 + 28025659 28027261 THE1D-int 1627 - 9 1613 29749 162 0 1 5 1 0 26 1 2 135 1 0 11 0 4 9 5 4 81 1 0 483 1 0 4 0 1 383 3 4 266 1 0 23 chain 5388 chrX 155270560 + 28039896 28039963 L1P5 443 + 176 243 191100 67 chain 25113 chrX 155270560 + 28044312 28044620 AluSx4 309 + 1 309 104210 308 chain 13784 chrX 155270560 + 28079521 28079767 L1MA4A 3247 - 62 294 145324 6 3 0 31 25 19 22 1 0 69 1 0 67 3 0 18 chain 27437 chrX 155270560 + 28108736 28109061 L1PA7 6471 - 1 327 94856 18 0 1 307 chain 277116 chrX 155270560 + 28112493 28115521 L1PA3long 6157 - 10 3035 14803 112 1 0 108 2 0 2805 chain 4503 chrX 155270560 + 28133077 28133125 MER45A 178 + 68 116 200748 48 chain 13873 chrX 155270560 + 28139445 28139632 Tigger3b 1229 - 287 614 144998 166 1 141 20 chain 21574 chrX 155270560 + 28147024 28147463 L1PA11 4918 - 293 692 121870 14 2 0 5 1 0 7 44 32 13 1 0 15 31 22 9 4 0 20 2 1 13 2 0 67 2 0 13 2 1 54 9 5 6 1 0 102 chain 21291 chrX 155270560 + 28155172 28155420 L1PA5 6144 + 5896 6144 122899 248 chain 534126 chrX 155270560 + 28164515 28170953 L1PA5 6144 - 12 6144 3693 135 0 1 702 1 0 279 5 6 1334 1 0 255 0 1 261 1 0 936 8 0 15 319 0 1036 9 0 174 0 1 298 0 1 73 0 2 429 32 58 135 chain 14442 chrX 155270560 + 28168459 28168766 AluYk4 311 - 6 176 143075 156 137 0 14 chain 10670 chrX 155270560 + 28174986 28175102 L1PA5 6144 + 5490 5606 157528 116 chain 47698 chrX 155270560 + 28175102 28175639 L1PA5 6144 + 5607 6144 60697 537 chain 14792 chrX 155270560 + 28191633 28191986 L1PB1 5432 - 2 315 141959 4 1 0 4 1 0 18 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 18 39 27 45 1 0 15 2 1 51 3 1 9 30 17 4 1 0 21 chain 11476 chrX 155270560 + 28192058 28192227 L1PB4 2604 - 1611 1779 154398 129 6 8 26 3 0 5 chain 3799 chrX 155270560 + 28212299 28212341 L1MC2 1988 + 1946 1988 210400 42 chain 552894 chrX 155270560 + 28224908 28230906 L1PA2 6032 + 25 6030 1077 521 0 6 1230 0 1 4247 chain 5104 chrX 155270560 + 28236593 28237048 MSTB1 431 + 0 431 194048 11 5 17 25 333 298 15 1 6 9 5 0 38 1 0 12 chain 3289 chrX 155270560 + 28246906 28246942 MLT2D 439 + 399 435 219197 36 chain 53533 chrX 155270560 + 28263997 28264771 L1MA2 4263 - 164 952 56659 41 8 1 50 0 4 37 1 0 11 2 1 83 1 3 61 17 14 6 1 0 4 0 2 99 0 23 74 5 1 18 1 0 73 0 1 181 chain 28679 chrX 155270560 + 28281163 28281505 L1PA7 6471 - 10 353 90412 152 0 1 190 chain 27941 chrX 155270560 + 28297305 28297703 L1PA8 5853 - 0 409 93196 22 24 42 29 1 0 19 2 1 51 1 0 10 5 4 67 2 0 44 1 0 120 chain 34977 chrX 155270560 + 28307448 28307967 MER51A 677 - 16 677 76217 72 8 0 26 1 0 23 2 3 24 2 1 56 0 3 56 1 0 19 1 169 10 10 0 20 12 3 176 chain 8660 chrX 155270560 + 28317108 28317209 THE1A 353 + 10 111 167427 101 chain 18050 chrX 155270560 + 28323258 28323474 MER1B 344 - 91 307 132736 216 chain 10663 chrX 155270560 + 28339825 28340221 MER4A1 472 - 14 409 79106 184 27 6 22 0 20 11 1 0 10 0 1 141 chain 53672 chrX 155270560 + 28340225 28340941 LTR17 781 + 0 754 56566 57 1 0 32 0 1 89 1 0 69 10 9 70 1 0 103 4 1 265 1 45 13 chain 1723 chrX 155270560 + 28340989 28341053 MER4A1 472 - 409 472 79106 54 1 0 9 chain 57991 chrX 155270560 + 28344189 28344937 MER4E1 777 - 7 777 53980 163 5 9 31 17 18 29 0 13 331 0 3 155 0 1 17 chain 7718 chrX 155270560 + 28349353 28349476 L1PB 1623 - 1377 1506 172805 55 16 22 52 chain 20919 chrX 155270560 + 28361075 28361462 L1MA2 4263 - 150 563 124215 9 1 0 9 1 2 21 15 15 12 0 3 15 7 37 25 9 7 151 44 39 68 chain 540153 chrX 155270560 + 28380218 28386338 L1PA4 6152 - 9 6152 2799 842 1 0 78 1 0 235 0 12 1080 0 1 730 1 0 465 0 3 927 0 1 922 1 0 663 1 11 173 chain 18333 chrX 155270560 + 28388391 28388699 L1PREC2 3366 - 2903 3196 131980 5 2 0 57 1 0 112 1 0 31 3 1 12 1 0 5 0 3 4 1 0 14 27 19 20 2 0 10 chain 6567 chrX 155270560 + 28395056 28395170 MER5A1 166 + 0 133 180728 24 0 7 36 19 31 35 chain 134214 chrX 155270560 + 28406072 28407571 L1P1 4361 - 356 1854 27101 496 1 0 1002 chain 175909 chrX 155270560 + 28407571 28409516 L1PA3long 6157 + 4210 6157 21361 1702 1 3 242 chain 217435 chrX 155270560 + 28417829 28420317 L1PA5 6144 + 3657 6141 18032 1598 0 7 8 17 6 293 1 3 563 2 0 6 chain 3380 chrX 155270560 + 28422246 28422420 LTR37A 408 - 19 209 217495 37 121 137 16 chain 93696 chrX 155270560 + 28442102 28443335 HSMAR1 1287 + 3 1255 38442 68 0 4 45 8 5 150 1 4 190 7 12 153 6 10 510 0 6 95 chain 9467 chrX 155270560 + 28445242 28445396 L1MA3 4352 - 0 145 163236 21 7 3 14 1 0 26 1 0 6 1 0 22 2 0 53 chain 17415 chrX 155270560 + 28472242 28472436 L1PA4 6152 + 5956 6151 134467 45 0 1 149 chain 477371 chrX 155270560 + 28473757 28480976 L1PA7 6471 + 756 6466 7820 538 1 0 215 3 2 5 0 1 43 0 1 758 0 3 5 1 2 311 0 1 53 2 1 199 0 3 100 0 1 215 4 5 262 3 5 242 0 1 943 3 7 260 1547 11 535 0 10 61 10 14 52 1 0 515 0 1 160 18 19 142 4 0 8 chain 136945 chrX 155270560 + 28477923 28479469 L1PA5 6144 - 0 1563 26653 115 1 15 717 0 3 713 chain 10208 chrX 155270560 + 28483733 28483854 MER85 139 - 0 131 159577 40 0 10 81 chain 24124 chrX 155270560 + 28490244 28490583 THE1B 368 - 11 368 109621 39 2 15 78 5 8 44 2 1 130 0 5 24 2 0 13 chain 58758 chrX 155270560 + 28500093 28500770 L1PA6 6164 - 2 674 53549 10 5 0 136 0 1 11 1 0 514 chain 23232 chrX 155270560 + 28511489 28511846 THE1B 368 - 0 352 114532 75 1 0 101 26 18 21 0 2 34 11 12 38 3 4 47 chain 33290 chrX 155270560 + 28522057 28522432 HERVH-int 3825 + 3443 3818 78746 375 chain 206346 chrX 155270560 + 28522545 28525578 HERVH-int 3825 - 394 3825 18763 411 6 5 13 16 16 13 165 0 311 0 295 16 1 0 7 1 2 105 16 17 130 15 16 148 0 1 4 1 0 206 4 31 72 0 1 81 0 1 59 1 0 39 9 0 205 15 0 197 0 3 248 1 0 20 0 1 4 28 296 37 11 10 66 23 22 66 6 1 227 2 1 27 chain 31167 chrX 155270560 + 28537676 28538051 THE1C 375 + 0 374 82224 350 1 0 24 chain 3369 chrX 155270560 + 28538921 28539326 MLT1H2 457 - 37 381 217697 22 240 186 14 7 1 11 79 78 32 chain 36928 chrX 155270560 + 28558644 28559222 L1MA2 4263 + 3537 4103 73619 47 14 11 67 1 0 87 0 4 7 2 1 48 4 1 53 1 0 50 0 1 42 11 9 24 10 11 55 19 12 36 chain 21504 chrX 155270560 + 28575232 28575582 THE1D 372 - 6 372 122133 54 0 1 62 23 0 9 33 80 106 9 0 54 chain 53451 chrX 155270560 + 28575587 28576268 THE1D-int 1627 - 5 726 56721 248 1 2 149 9 48 274 chain 17815 chrX 155270560 + 28593229 28593458 AluSx4 309 + 11 254 133354 46 12 26 171 chain 24302 chrX 155270560 + 28595765 28596054 AluSc 308 + 10 300 108650 115 0 1 174 chain 21233 chrX 155270560 + 28653481 28653822 MER47A 366 + 11 346 123088 21 37 38 62 4 0 33 6 0 4 1 0 50 0 4 123 chain 68755 chrX 155270560 + 28659183 28660010 L1PA7 6471 - 1 822 48920 442 4 0 317 2 1 7 1 0 54 chain 82588 chrX 155270560 + 28660012 28661009 L1P3 4156 + 2536 3531 42505 99 8 9 439 10 14 382 7 0 52 chain 28141 chrX 155270560 + 28668343 28668695 THE1B 368 - 0 368 92498 194 1 0 108 0 2 5 0 15 44 chain 22796 chrX 155270560 + 28705942 28706240 AluSz6 309 + 6 302 116598 144 11 9 143 chain 25353 chrX 155270560 + 28707295 28707662 THE1C 375 + 0 375 102935 30 1 0 17 0 6 10 9 19 7 9 0 53 0 4 38 2 1 165 1 0 25 chain 50924 chrX 155270560 + 28718665 28719303 L1PA8 5853 - 0 630 58355 92 2 1 19 2 1 37 1 0 13 1 0 11 2 1 70 2 0 44 1 0 341 chain 115172 chrX 155270560 + 28733031 28734508 L1PA13 3608 + 1236 2931 32722 259 0 1 328 10 226 363 6 5 29 0 1 106 5 1 258 8 13 105 chain 372721 chrX 155270560 + 28738719 28742891 L1PA5 6144 - 0 4181 11002 331 0 6 240 0 1 1216 0 4 357 1 0 1683 1 0 343 chain 39187 chrX 155270560 + 28745466 28745906 L1P1 4361 - 33 471 70474 23 1 0 155 1 0 260 chain 25407 chrX 155270560 + 28745906 28746199 L1PA2 6032 + 5738 6031 102648 128 5 0 7 0 5 153 chain 19436 chrX 155270560 + 28750733 28750963 AluSc 308 + 27 258 128855 81 1 2 148 chain 40538 chrX 155270560 + 28782961 28783426 L1PA5 6144 + 5675 6140 68537 465 chain 14639 chrX 155270560 + 28789929 28790083 AluYb8 318 + 163 317 142459 154 chain 5758 chrX 155270560 + 28795929 28795999 MER20 218 + 89 159 187569 70 chain 122339 chrX 155270560 + 28814364 28815943 THE1B-int 1605 - 0 1605 30271 9 0 1 337 10 8 38 1 2 567 1 0 186 2 27 402 14 16 12 chain 16449 chrX 155270560 + 28834034 28834349 L1MA4 2864 - 415 725 137067 115 2 0 84 92 89 22 chain 45024 chrX 155270560 + 28851049 28851697 L1PA16 3655 - 36 657 63028 16 5 0 11 6 0 6 0 1 8 3 0 156 24 14 63 1 0 55 2 0 85 1 0 206 chain 29336 chrX 155270560 + 28866074 28866446 L1PA8 5853 + 5486 5853 87364 34 0 1 43 1 0 44 2 0 74 1 0 58 2 1 19 2 1 92 chain 2893 chrX 155270560 + 28878167 28878198 Tigger1 2417 + 2056 2087 227165 31 chain 13296 chrX 155270560 + 28884310 28884641 L1PB1 5432 + 5129 5427 147096 5 1 0 12 1 0 10 2 0 3 2 0 9 2 0 33 0 1 17 1 0 17 1 0 45 1 0 15 85 67 7 1 0 34 2 1 13 3 0 9 chain 8577 chrX 155270560 + 28896682 28896792 MER92B 628 - 402 512 167867 67 0 1 12 1 0 30 chain 12173 chrX 155270560 + 28902164 28902304 L1PA2 6032 + 5891 6029 151523 128 2 0 10 chain 31555 chrX 155270560 + 28910241 28910691 LTR7 482 - 5 482 81554 44 13 14 50 3 4 70 0 31 149 23 17 98 chain 277282 chrX 155270560 + 28912435 28915828 HERVH-int 3825 - 7 3825 14791 480 8 218 25 0 3 448 0 1 54 0 1 4 1 0 166 5 4 5 0 1 51 0 24 232 4 9 312 0 1 309 1 0 13 0 2 24 9 0 205 15 0 446 0 1 26 0 149 15 0 57 47 3 0 10 0 4 105 1 2 31 1 0 50 0 2 260 6 0 21 chain 31804 chrX 155270560 + 28915835 28916285 LTR7 482 - 5 482 81160 44 13 14 50 3 4 70 0 31 149 20 14 101 chain 22649 chrX 155270560 + 28943769 28944037 AluSc5 308 + 8 280 117330 20 0 4 248 chain 52619 chrX 155270560 + 28955779 28956651 L1PREC2 3366 + 2207 3043 57227 77 0 1 4 7 8 58 0 4 67 8 11 313 2 0 28 0 1 25 1 0 46 1 0 4 3 0 10 32 24 12 11 6 16 3 0 30 3 0 4 4 0 7 22 8 33 8 6 33 chain 48930 chrX 155270560 + 28963144 28963882 L1PA8 5853 + 5120 5853 59790 66 1 0 4 21 22 144 7 8 200 1 0 41 5 3 43 0 1 27 1 0 5 28 27 25 6 5 15 8 7 90 chain 19692 chrX 155270560 + 28965582 28965835 L1PA5 6144 + 5896 6139 128127 147 12 4 79 2 0 13 chain 99940 chrX 155270560 + 28967687 28968770 L1PA3long 6157 - 630 1713 36798 1083 chain 56933 chrX 155270560 + 28968770 28969388 L1PA3long 6157 + 5528 6146 54573 618 chain 96642 chrX 155270560 + 28974193 28975272 L1P1 4361 - 33 1110 37657 23 1 0 155 1 0 899 chain 12872 chrX 155270560 + 28975273 28975413 L1PA2 6032 + 5892 6032 148739 140 chain 28303 chrX 155270560 + 28979462 28979822 L1PA8 5853 - 0 354 91931 93 1 0 19 2 1 52 1 0 9 1 0 70 2 0 45 1 0 48 0 1 16 chain 26962 chrX 155270560 + 28995294 28995707 MSTA 426 - 0 426 96399 108 10 18 46 19 18 86 11 16 29 5 6 99 chain 9753 chrX 155270560 + 29027000 29027124 L1PA16 3655 - 116 240 161835 124 chain 8577 chrX 155270560 + 29031220 29031415 L1PA11 4918 + 4410 4578 167864 65 2 0 13 1 0 23 49 28 10 6 5 13 2 0 11 chain 4891 chrX 155270560 + 29145373 29145530 MER5A 189 - 24 183 196362 17 88 90 52 chain 54361 chrX 155270560 + 29179825 29180489 L1PA8 5853 + 5195 5853 56124 369 1 0 46 2 0 68 2 1 15 7 6 60 1 0 93 chain 13115 chrX 155270560 + 29187194 29187399 L1MA6 2487 - 225 414 147783 21 38 22 146 chain 157750 chrX 155270560 + 29195722 29197505 L1PA6 6164 - 8 1791 23624 159 0 1 681 1 0 942 chain 19504 chrX 155270560 + 29221612 29221839 AluSp 311 + 57 285 128645 74 0 1 153 chain 16462 chrX 155270560 + 29257729 29257957 MER30 238 + 0 238 137032 113 4 17 69 4 1 38 chain 92045 chrX 155270560 + 29262928 29263999 L1PA7 6471 - 3 1106 38961 12 1 0 10 0 1 32 0 32 766 1 0 97 0 1 152 chain 36323 chrX 155270560 + 29269992 29270392 L1PA3long 6157 + 5757 6157 74471 400 chain 21813 chrX 155270560 + 29280527 29280795 AluSp 311 + 29 297 120964 268 chain 34565 chrX 155270560 + 29283590 29283965 L1PA3long 6157 - 0 375 76804 375 chain 36369 chrX 155270560 + 29283974 29284368 L1PA3long 6157 + 5388 5782 74403 394 chain 6463 chrX 155270560 + 29288415 29288829 L1ME1 1623 - 798 1185 181526 14 2 0 29 2 0 34 11 8 16 1 0 11 273 254 21 chain 83657 chrX 155270560 + 29289287 29290816 L1PA15 4387 - 36 4250 42052 22 20 13 46 17 14 39 2 1 12 4 0 19 1 0 44 12 11 26 1 0 172 2 1 40 4 2 53 7 3 21 12 10 93 41 1 223 0 1 19 5 6 106 3 5 77 89 2837 11 1 0 28 25 27 74 0 1 45 1 0 54 23 22 35 chain 19188 chrX 155270560 + 29295804 29296175 Tigger4b 360 - 0 359 129566 14 10 8 24 21 19 23 5 0 96 44 45 60 6 2 68 chain 19487 chrX 155270560 + 29309527 29309752 L1PA7 6471 - 4 229 128696 225 chain 34462 chrX 155270560 + 29316983 29317429 MLT2A1 477 + 0 477 76975 169 4 1 25 20 12 186 1 43 41 chain 99621 chrX 155270560 + 29350781 29351908 SVA_E 1901 - 17 1284 36880 425 1 0 198 1 0 166 1 0 168 4 0 110 1 0 5 1 0 5 25 174 16 chain 36915 chrX 155270560 + 29351931 29352550 SVA_F 1814 - 523 1150 73638 17 1 0 185 0 1 8 10 37 4 0 1 76 45 33 4 1 0 44 0 1 25 0 39 28 86 0 12 1 0 4 0 40 68 chain 3169 chrX 155270560 + 29352232 29352277 SVA_F 1814 - 725 771 104444 7 0 1 38 chain 3640 chrX 155270560 + 29352379 29352435 SVA_F 1814 - 746 802 133366 56 chain 1972 chrX 155270560 + 29352435 29352463 SVA_F 1814 - 866 894 104444 28 chain 71141 chrX 155270560 + 29352586 29353431 SVA_D 2077 - 1179 2077 47870 248 0 40 401 2 1 23 0 14 111 0 6 13 6 5 8 1 0 6 1 0 6 1 0 6 1 0 6 1 0 4 chain 25348 chrX 155270560 + 29403293 29403593 AluSp 311 + 4 305 102968 260 0 1 40 chain 26541 chrX 155270560 + 29423493 29423780 AluYa5 310 - 21 308 97877 287 chain 28942 chrX 155270560 + 29431472 29431789 L1PA4 6152 - 0 317 89265 317 chain 3180 chrX 155270560 + 29447292 29447327 MER5A1 166 - 36 71 221358 35 chain 4676 chrX 155270560 + 29460513 29460611 L1PB1 5432 + 5332 5424 198798 14 2 0 24 1 0 17 8 7 10 2 1 15 1 0 4 chain 22593 chrX 155270560 + 29494986 29495224 AluYb8 318 - 8 246 117615 238 chain 6234 chrX 155270560 + 29498037 29498128 L1PB2 3958 - 147 235 183284 36 1 0 22 4 2 28 chain 14732 chrX 155270560 + 29592505 29592703 MSTA-int 1630 - 6 204 142168 73 0 1 34 8 7 83 chain 64199 chrX 155270560 + 29600509 29601205 L1PA2 6032 - 0 696 50919 696 chain 29350 chrX 155270560 + 29601205 29601532 L1P1 4361 + 4003 4328 87287 148 1 0 154 1 0 23 chain 8883 chrX 155270560 + 29607893 29608023 MSTA 426 - 12 144 166216 22 12 14 96 chain 159312 chrX 155270560 + 29612880 29615266 L1PB1 5432 - 16 2375 23428 12 1 0 13 1 0 9 0 1 11 1 0 24 2 0 10 13 10 18 38 26 42 22 20 50 20 14 10 1 0 6 4 3 23 3 0 23 0 1 18 8 2 54 1 2 210 1 0 178 2 0 55 11 12 27 21 24 128 6 5 15 5 7 149 4 0 25 0 9 172 7 6 25 6 7 173 9 10 44 5 0 6 0 6 66 2 0 28 0 1 114 0 1 454 chain 61018 chrX 155270560 + 29628997 29629765 MER4E 760 + 0 760 52321 23 0 1 344 2 0 54 9 11 36 0 1 22 13 0 243 0 2 16 0 1 6 chain 25686 chrX 155270560 + 29634448 29634762 L1PA4 6152 - 0 315 101351 9 0 1 129 0 7 10 7 0 159 chain 15191 chrX 155270560 + 29639900 29640211 L1MA4 2864 - 58 342 140799 40 3 1 28 6 0 10 30 50 10 0 1 4 42 0 72 0 1 56 0 1 10 chain 23361 chrX 155270560 + 29654884 29655187 AluSp 311 + 11 299 113861 129 20 4 19 1 2 134 chain 17932 chrX 155270560 + 29674397 29674846 L1PB1 5432 - 2 402 133027 4 1 0 8 1 0 14 1 0 12 7 6 16 1 0 24 2 0 15 1 0 4 3 1 13 9 0 14 0 6 6 8 0 7 4 3 41 1 0 15 2 1 47 7 5 8 4 0 16 1 0 10 1 0 12 1 0 8 5 0 11 11 0 20 4 0 6 14 18 29 chain 8122 chrX 155270560 + 29709804 29709889 AluYb8 318 + 225 310 170372 85 chain 30394 chrX 155270560 + 29724382 29724748 THE1B-int 1605 - 5 371 83695 366 chain 29795 chrX 155270560 + 29736362 29736731 L1PA7 6471 + 6100 6470 85451 207 2 1 148 0 2 12 chain 66826 chrX 155270560 + 29738128 29738882 L1PA7 6471 + 5715 6469 49719 37 0 3 698 3 0 16 chain 4095 chrX 155270560 + 29769570 29769616 U2 167 + 0 46 206000 46 chain 29401 chrX 155270560 + 29801010 29801320 AluYa5 310 - 0 310 87060 310 chain 27108 chrX 155270560 + 29818819 29819146 AluSp 311 + 0 311 95909 128 16 0 183 chain 18335 chrX 155270560 + 29824925 29825234 MSTA 426 + 46 426 131972 65 2 59 33 11 9 24 2 0 64 27 41 54 0 4 27 chain 5813 chrX 155270560 + 29846934 29847005 MER39 703 - 380 451 187012 71 chain 11973 chrX 155270560 + 29862719 29862880 MER2 342 + 132 295 152313 112 7 9 42 chain 38664 chrX 155270560 + 29878481 29878943 L1PA7 6471 - 3 472 71205 169 0 2 16 1 0 269 0 6 7 chain 103731 chrX 155270560 + 29922493 29923763 L1PA8 5853 - 6 1274 35789 87 1 0 19 2 1 47 0 1 13 2 1 23 0 1 46 2 0 44 1 0 42 1 0 428 0 1 86 0 2 71 0 4 117 0 1 103 4 0 30 1 0 100 chain 21221 chrX 155270560 + 29924207 29924481 AluY 311 + 36 300 123133 86 0 1 6 5 6 154 12 0 11 chain 21898 chrX 155270560 + 29927855 29928233 L1PA15 4387 + 3987 4356 120634 116 0 2 17 4 8 17 0 1 36 7 4 19 4 0 10 1 0 19 0 2 18 17 14 44 3 1 14 5 0 27 chain 54290 chrX 155270560 + 29933873 29934458 L1PA2 6032 - 8 593 56171 585 chain 5994 chrX 155270560 + 29934458 29934521 L1PA2 6032 + 5363 5426 185295 63 chain 21132 chrX 155270560 + 29951197 29951454 L1PA7 6471 + 6205 6468 123439 11 0 1 231 0 5 15 chain 24377 chrX 155270560 + 29986896 29987184 AluY 311 + 11 300 108206 121 0 1 167 chain 25176 chrX 155270560 + 29993662 29994063 LTR7 482 + 0 482 103864 69 6 95 16 51 0 20 1 11 13 8 40 43 0 1 174 chain 286263 chrX 155270560 + 29994065 29997697 HERVH-int 3825 + 0 3825 14268 282 0 2 49 2 1 42 0 2 17 22 21 30 91 323 11 2 0 7 3 8 20 6 4 405 1 0 377 1 6 75 0 3 169 0 3 143 0 4 118 2 0 220 62 0 491 5 1 240 3 6 28 1 6 164 0 1 12 1 6 111 13 14 13 7 4 386 chain 28602 chrX 155270560 + 29998956 29999357 LTR7 482 + 2 475 90722 67 8 46 43 7 8 58 11 12 31 0 31 7 0 1 169 chain 28963 chrX 155270560 + 29999406 29999852 L1MA3 4352 - 813 1265 89164 136 7 8 68 8 10 30 8 9 83 0 1 64 11 12 31 chain 545228 chrX 155270560 + 30000000 30006000 L1PA3long 6157 - 149 6157 2044 2063 0 1 1787 0 6 1492 0 1 658 chain 24024 chrX 155270560 + 30008812 30009451 L1M1 2793 - 1685 2233 110191 105 1 0 99 14 11 54 1 0 8 2 0 29 64 44 13 2 0 5 2 0 11 58 45 23 84 30 14 6 18 10 3 0 7 5 4 10 1 0 8 chain 259657 chrX 155270560 + 30030295 30033175 L1PA4 6152 + 3259 6152 15720 47 0 3 205 1 2 424 0 1 48 0 5 357 0 4 1792 1 0 5 chain 26658 chrX 155270560 + 30043427 30043791 THE1B 368 + 1 368 97460 103 1 0 65 1 0 29 9 16 18 1 0 10 1 0 126 chain 28500 chrX 155270560 + 30054341 30054806 MER11A 1151 - 0 530 91184 66 1 0 87 8 7 96 1 33 21 34 61 33 0 4 37 29 33 52 chain 4674 chrX 155270560 + 30079000 30079076 MER20 218 + 63 144 198816 20 12 17 44 chain 52393 chrX 155270560 + 30090966 30091611 THE1A-int 1579 - 937 1579 57357 139 2 1 444 7 5 53 chain 27107 chrX 155270560 + 30091611 30091966 THE1A 353 - 0 353 95915 155 1 0 86 2 1 111 chain 29572 chrX 155270560 + 30121729 30122129 LTR7 482 + 0 482 86310 69 8 46 92 15 57 43 0 2 173 chain 299635 chrX 155270560 + 30122131 30125708 HERVH-int 3825 + 0 3825 13445 333 2 1 65 24 23 24 91 323 9 2 0 9 3 8 698 0 9 1570 5 8 328 13 14 126 0 2 275 chain 31189 chrX 155270560 + 30126960 30127370 LTR7 482 + 0 482 82181 68 9 47 109 0 1 8 0 31 43 0 2 173 chain 11726 chrX 155270560 + 30129798 30129938 L1PA16 3655 - 94 234 153363 140 chain 66623 chrX 155270560 + 30146798 30147814 L1PB1 5432 + 4429 5413 49820 200 0 1 9 0 1 74 2 0 91 1 2 6 1 0 71 4 5 214 7 6 5 1 0 26 1 0 7 30 23 50 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 21 1 0 13 1 0 9 chain 14086 chrX 155270560 + 30154873 30155023 L1PA4 6152 - 6 156 144274 150 chain 44606 chrX 155270560 + 30156939 30157479 MER41A 554 - 0 554 63474 275 0 14 265 chain 13334 chrX 155270560 + 30160323 30160476 L1PA5 6144 + 5991 6144 146958 153 chain 65905 chrX 155270560 + 30167108 30168207 MER11A 1151 - 0 1151 50134 39 1 0 27 1 0 72 8 7 115 0 57 17 0 1 7 31 30 32 15 19 22 3 4 11 6 9 57 0 1 68 0 1 6 1 0 5 35 47 182 31 0 15 14 11 55 0 4 23 12 11 93 16 24 79 chain 21587 chrX 155270560 + 30187010 30187248 L1PA5 6144 + 5902 6140 121818 238 chain 59513 chrX 155270560 + 30220288 30221057 MER4E 760 + 0 760 53096 24 2 0 127 44 47 28 3 0 134 0 2 84 1 0 83 2 0 6 6 0 225 chain 34201 chrX 155270560 + 30228343 30228831 MER4A 717 + 0 476 77348 54 0 5 69 2 1 210 10 0 47 1 0 9 1 0 59 9 5 17 chain 16467 chrX 155270560 + 30229448 30229698 L1PA8 5853 + 5608 5853 137016 71 1 0 21 0 1 39 2 1 19 1 0 56 26 23 14 chain 26076 chrX 155270560 + 30234715 30235021 AluYk4 311 + 0 299 99723 126 5 0 155 2 0 18 chain 4292 chrX 155270560 + 30246189 30246292 L1MA9 1812 - 339 436 203329 16 3 2 34 1 0 7 27 23 15 chain 14447 chrX 155270560 + 30255967 30256126 AluYk11 308 + 141 300 143057 159 chain 23759 chrX 155270560 + 30265800 30266086 AluY 311 + 21 308 111710 104 1 2 181 chain 62961 chrX 155270560 + 30273530 30274518 MER11B 1079 - 8 1079 51465 20 1 0 174 0 1 50 8 9 16 39 43 16 18 8 16 1 0 7 0 7 160 7 8 12 0 1 15 24 12 22 16 17 311 9 100 46 chain 20011 chrX 155270560 + 30291297 30291585 THE1B 368 + 0 299 127109 102 1 8 59 1 0 29 0 3 5 4 8 18 1 0 5 7 6 56 chain 58113 chrX 155270560 + 30299175 30299838 L1PA5 6144 - 16 679 53918 137 8 9 463 1 0 54 chain 120251 chrX 155270560 + 30312308 30313890 THE1B-int 1605 + 0 1605 30963 113 1 4 189 1 2 124 0 25 240 7 1 26 69 68 449 0 1 363 chain 3385 chrX 155270560 + 30317986 30318029 Charlie4a 502 + 115 158 217377 43 chain 266573 chrX 155270560 + 30341111 30344052 L1PA3long 6157 - 795 3743 15360 61 0 1 951 0 3 417 0 1 744 0 1 492 0 1 276 chain 71238 chrX 155270560 + 30344052 30344856 L1PA3long 6157 + 5356 6157 47694 791 3 0 10 chain 23667 chrX 155270560 + 30364856 30365143 AluSc8 310 + 0 289 112219 52 3 0 66 0 1 13 0 3 126 0 1 27 chain 198827 chrX 155270560 + 30370681 30373582 L1PA13 3608 - 120 3470 19295 20 1 0 20 16 12 40 2 0 10 1 0 10 3 4 37 1 0 42 0 1 19 2 0 67 28 22 7 0 6 11 1 0 32 2 1 112 1 0 286 4 0 28 7 1 249 0 1 187 8 7 8 1 0 214 1 0 5 0 1 58 45 544 377 0 3 374 0 2 39 2 0 99 1 0 17 2 0 17 2 0 16 1 0 19 6 2 18 2 0 15 1 0 15 2 1 117 107 94 17 9 7 12 2 1 26 chain 25906 chrX 155270560 + 30396739 30397094 THE1C 375 + 0 350 100405 179 0 2 5 22 12 6 0 3 143 chain 2915 chrX 155270560 + 30397287 30397320 THE1C-int 1605 + 123 156 226796 33 chain 27168 chrX 155270560 + 30398704 30399082 THE1C 375 + 0 375 95701 144 0 1 34 0 3 12 25 19 137 1 0 25 chain 3517 chrX 155270560 + 30399162 30399248 L1MCa 1829 - 82 169 215105 17 31 32 38 chain 38777 chrX 155270560 + 30399611 30400299 L1PB1 5432 - 40 692 71044 22 1 0 20 29 24 18 25 15 11 1 0 45 1 0 16 2 1 47 7 5 9 5 1 14 47 41 34 6 0 72 1 2 255 chain 5234 chrX 155270560 + 30401860 30401961 MLT1B 390 - 55 157 192686 39 28 29 34 chain 16985 chrX 155270560 + 30439856 30440034 AluYb8 318 - 0 178 135632 178 chain 6992 chrX 155270560 + 30440727 30440823 L1MA8 2339 + 1396 1493 177527 36 0 2 34 1 0 25 chain 128587 chrX 155270560 + 30447341 30448856 L1P1 4361 + 4 1519 28422 1515 chain 27493 chrX 155270560 + 30467048 30467458 LTR7 482 - 0 482 94668 176 0 1 15 0 32 33 0 1 39 2 53 18 14 13 15 29 17 69 chain 312914 chrX 155270560 + 30468717 30472515 HERVH-int 3825 - 0 3825 12895 225 0 2 429 1 0 65 0 19 66 1 0 896 0 4 17 11 16 370 4 31 215 1 0 13 0 2 24 9 0 7 0 1 86 1 2 148 0 4 337 0 10 57 1 0 57 0 20 46 14 11 14 3 0 12 1 0 15 66 12 12 1 0 10 1 0 36 5 0 58 0 1 216 0 1 35 0 11 212 chain 32166 chrX 155270560 + 30472517 30472978 LTR7 482 - 0 482 80589 176 0 1 15 0 32 33 0 1 109 15 14 15 29 17 69 chain 72114 chrX 155270560 + 30474393 30475218 L1PA6 6164 - 2 827 47426 825 chain 7885 chrX 155270560 + 30490724 30490824 L1MA3 4352 - 328 428 171769 100 chain 3353 chrX 155270560 + 30498185 30498222 LTR16A2 485 + 419 456 218006 37 chain 114234 chrX 155270560 + 30503690 30505385 L1PA7 6471 - 4 1401 33016 190 1 3 284 0 3 276 2 1 6 0 1 82 4 11 5 0 3 90 313 0 442 chain 5047 chrX 155270560 + 30509781 30509842 MIR 256 - 107 168 194656 61 chain 6224 chrX 155270560 + 30543926 30544027 MLT2B1 522 - 98 199 183379 51 20 20 30 chain 43270 chrX 155270560 + 30545245 30545759 MER9a3 513 - 0 513 65092 21 4 0 58 0 1 177 1 0 145 0 1 90 0 2 18 chain 56370 chrX 155270560 + 30554461 30555197 L1PA15 4387 + 2256 3017 54921 156 1 7 443 0 18 20 7 8 109 chain 10112 chrX 155270560 + 30559687 30559816 HSMAR1 1287 + 0 130 160034 76 0 1 53 chain 146129 chrX 155270560 + 30562560 30564158 L1PA3long 6157 - 0 1597 25142 1522 1 0 75 chain 45605 chrX 155270560 + 30564158 30564681 L1P1 4361 + 3821 4341 62157 330 1 0 154 1 0 23 2 1 12 chain 15406 chrX 155270560 + 30569562 30569782 MER30 238 + 0 238 140181 107 13 34 58 5 2 37 chain 21955 chrX 155270560 + 30597878 30598194 L1MA2 4263 - 205 516 120403 92 1 0 8 1 0 152 16 13 46 chain 20547 chrX 155270560 + 30600502 30600784 Tigger3c 601 - 23 308 125480 39 14 17 229 chain 29447 chrX 155270560 + 30617791 30618101 AluYa5 310 - 0 310 86863 310 chain 164097 chrX 155270560 + 30619646 30622016 SVA_F 1814 + 9 1813 22799 177 1 2 649 6 6 51 578 0 43 1 0 10 0 15 39 1 0 10 1 0 159 1 0 643 chain 12990 chrX 155270560 + 30620535 30620712 SVA_F 1814 + 898 1091 82057 50 3 18 39 0 1 85 chain 2208 chrX 155270560 + 30620712 30620737 SVA_F 1814 + 1267 1291 137622 7 1 0 17 chain 19927 chrX 155270560 + 30620760 30621108 SVA_F 1814 + 899 1134 80934 52 0 15 41 1 2 97 129 0 28 chain 4423 chrX 155270560 + 30620998 30621044 SVA_F 1814 + 1200 1246 176640 46 chain 1232 chrX 155270560 + 30621044 30621069 SVA_F 1814 + 830 855 138756 25 chain 23636 chrX 155270560 + 30623581 30623898 AluSp 311 + 13 306 112380 119 2 0 101 16 0 63 3 0 5 3 0 5 chain 16658 chrX 155270560 + 30626165 30626392 MER30 238 - 1 237 136514 38 3 0 73 4 16 109 chain 28570 chrX 155270560 + 30639819 30640125 AluYg6 310 + 0 306 90869 306 chain 30276 chrX 155270560 + 30642176 30642573 L1MA2 4263 + 3395 3788 84008 189 7 3 75 1 0 7 14 15 104 chain 39958 chrX 155270560 + 30657711 30658222 MER9a3 513 - 0 513 69381 68 2 0 9 1 2 176 5 4 71 1 2 70 0 1 90 0 2 18 chain 26719 chrX 155270560 + 30684994 30685303 AluY 311 + 5 311 97263 127 0 1 163 2 0 6 2 0 9 chain 25803 chrX 155270560 + 30689122 30689432 AluSq2 311 + 0 308 100855 10 3 1 297 chain 118772 chrX 155270560 + 30771486 30772892 SVA_D 2077 - 12 2035 31503 620 2 0 19 0 615 88 1 77 57 76 0 388 1 5 154 chain 4963 chrX 155270560 + 30772273 30772343 SVA_D 2077 - 1528 1598 138510 70 chain 8965 chrX 155270560 + 30785672 30785811 MER58A 224 - 74 194 165799 10 19 0 110 chain 432623 chrX 155270560 + 30785894 30790749 L1PA4 6152 - 9 4871 9245 138 9 11 646 11 16 697 1 0 1913 0 1 1440 chain 11099 chrX 155270560 + 30790971 30791108 L1PA6 6164 + 5941 6078 155812 137 chain 5312 chrX 155270560 + 30793049 30793182 L1MB7 1623 - 130 242 191901 15 1 0 20 56 36 41 chain 26292 chrX 155270560 + 30828284 30828584 AluYf4 310 - 12 310 98858 31 3 1 266 chain 81031 chrX 155270560 + 30836677 30837913 L1PB1 5432 - 9 1216 43178 5 1 0 11 8 7 7 1 0 23 1 0 23 3 1 14 1 0 5 24 25 6 2 0 16 1 0 44 1 0 15 4 3 46 2 0 4 2 0 9 5 1 14 3 2 4 1 0 24 33 11 294 18 20 55 0 4 25 0 2 74 0 1 153 0 4 24 1 2 229 chain 17095 chrX 155270560 + 30858616 30858881 THE1B 368 + 0 368 135332 44 8 23 49 0 15 7 0 4 24 1 0 9 1 0 23 1 21 47 1 52 50 chain 27625 chrX 155270560 + 30891372 30891660 AluYd8 298 + 0 288 94282 288 chain 16342 chrX 155270560 + 30912686 30913048 THE1B 368 + 0 368 137362 15 2 0 32 0 1 34 49 50 45 60 66 108 1 0 4 2 3 10 chain 47492 chrX 155270560 + 30923749 30924534 MER4D1 891 + 0 818 60847 26 29 32 54 14 19 84 0 4 16 0 27 151 0 1 180 6 17 45 98 79 59 0 1 23 chain 3674 chrX 155270560 + 30933666 30933714 MLT1D 503 + 409 457 212317 48 chain 12884 chrX 155270560 + 30942982 30943298 L1MA6 2487 + 2144 2398 148687 83 30 14 35 2 0 15 1 0 4 84 44 40 3 0 19 chain 4183 chrX 155270560 + 30953369 30953489 MER20 218 + 0 148 204786 14 56 84 50 chain 50549 chrX 155270560 + 30957186 30957791 L1PA7 6471 + 5861 6465 58612 159 6 0 60 0 4 224 0 1 156 chain 5922 chrX 155270560 + 30976468 30976656 MLT1A1 405 + 188 357 185976 20 92 67 29 2 8 45 chain 29502 chrX 155270560 + 31028621 31029155 MER51B 395 - 8 373 86633 87 170 0 49 7 6 62 0 1 102 0 1 57 chain 13183 chrX 155270560 + 31028724 31028871 L1PA7 6471 - 14 161 147534 147 chain 5013 chrX 155270560 + 31039386 31039465 MADE1 96 + 0 96 194986 31 1 17 9 1 2 37 chain 20289 chrX 155270560 + 31051056 31051418 THE1B 368 - 0 368 126255 56 1 2 7 2 0 60 7 15 14 39 37 54 17 18 105 chain 30635 chrX 155270560 + 31060991 31061433 MER4D1 891 - 342 831 83148 21 9 10 31 1 19 38 1 0 14 1 0 51 4 7 97 0 27 174 chain 35386 chrX 155270560 + 31073985 31074379 L1PA4 6152 + 5745 6139 75684 394 chain 551140 chrX 155270560 + 31095442 31101580 L1PA4 6152 - 9 6152 1295 2536 0 1 2875 0 1 40 0 3 687 chain 3451 chrX 155270560 + 31114229 31114287 L1ME1 1623 - 138 190 216193 36 9 3 13 chain 7051 chrX 155270560 + 31197654 31197748 LTR19B 566 - 0 91 177103 52 3 0 39 chain 72608 chrX 155270560 + 31202461 31203241 L1PA3long 6157 + 5377 6157 47212 780 chain 8562 chrX 155270560 + 31225894 31226022 MER85 139 - 0 139 167948 22 14 25 92 chain 3997 chrX 155270560 + 31237879 31237945 MER8 282 - 212 279 207428 4 1 0 14 3 5 44 chain 15543 chrX 155270560 + 31238921 31239138 MER30 238 + 0 238 139757 15 0 18 32 3 4 25 0 6 13 4 0 125 chain 8443 chrX 155270560 + 31243745 31243912 MER5A 189 - 24 188 168605 18 28 24 38 18 19 65 chain 41547 chrX 155270560 + 31245932 31246386 L1PA2 6032 + 5577 6032 67226 310 0 1 144 chain 23934 chrX 155270560 + 31329601 31329896 L1PA8A 6298 - 1293 1587 110244 176 6 4 26 0 1 87 chain 108833 chrX 155270560 + 31329896 31331179 L1PA8A 6298 + 5003 6289 34480 481 1 0 553 0 4 248 chain 204386 chrX 155270560 + 31390713 31392947 L1PA3long 6157 + 3918 6156 18896 439 0 4 868 1 0 920 0 1 6 chain 9218 chrX 155270560 + 31393186 31393313 MER85 139 + 1 139 164465 95 9 20 23 chain 31998 chrX 155270560 + 31395838 31396288 LTR7 482 + 0 482 80866 101 15 14 149 14 44 74 0 2 35 13 14 49 chain 297364 chrX 155270560 + 31396290 31399866 HERVH-int 3825 + 0 3825 13565 180 0 2 99 0 2 56 0 2 23 15 16 78 12 72 22 0 1 5 11 160 38 0 1 22 0 1 457 0 11 228 1 2 124 0 5 36 0 3 133 0 1 226 0 4 318 0 1 101 5 6 667 0 1 304 9 10 273 0 2 16 1 0 116 chain 32115 chrX 155270560 + 31401034 31401482 LTR7 482 + 0 477 80661 101 20 14 106 0 1 44 0 31 89 0 2 31 13 14 44 chain 64776 chrX 155270560 + 31403764 31404505 L1PA5 6144 + 5402 6140 50671 111 0 3 615 6 0 9 chain 3393 chrX 155270560 + 31416157 31416302 MIR 256 - 21 147 217218 16 50 33 29 32 30 18 chain 32322 chrX 155270560 + 31418229 31418680 MER4A1 472 + 0 472 80324 220 33 55 51 1 0 146 chain 32289 chrX 155270560 + 31426904 31427276 L1PA4 6152 - 1 373 80378 372 chain 5556 chrX 155270560 + 31455840 31455919 MER33 330 - 140 222 189510 38 0 4 25 3 2 13 chain 533568 chrX 155270560 + 31483322 31489724 L1PA7 6471 - 3 6471 3756 7 4 0 689 3 22 50 0 2 67 4 11 283 12 23 178 0 5 181 0 1 137 3 0 1479 1 0 230 1 5 384 9 7 75 0 1 9 3 0 249 0 1 76 3 0 224 0 1 86 0 1 429 2 1 307 11 39 173 1 0 513 2 1 94 15 17 259 0 2 149 chain 38945 chrX 155270560 + 31510691 31511153 L1PA7 6471 + 6009 6468 70809 445 3 0 14 chain 189583 chrX 155270560 + 31529451 31531533 L1PA3long 6157 - 0 2081 20092 332 2 1 1748 chain 98336 chrX 155270560 + 31548791 31549842 L1HS 6032 - 0 1051 37213 1051 chain 366852 chrX 155270560 + 31549843 31553756 L1HS 6032 + 1105 5019 11192 469 0 1 3444 chain 40348 chrX 155270560 + 31559458 31559927 L1PA5 6144 - 1 471 68810 333 1 2 135 chain 29090 chrX 155270560 + 31577478 31577782 AluYg6 310 + 1 305 88593 304 chain 7305 chrX 155270560 + 31600152 31600230 L1PA3long 6157 + 6079 6157 175407 78 chain 37952 chrX 155270560 + 31601880 31602313 L1PA4 6152 - 4 437 72208 433 chain 20266 chrX 155270560 + 31624059 31624432 THE1D 372 + 5 372 126326 10 3 0 14 3 1 10 25 7 27 3 0 6 14 18 32 0 14 22 32 34 172 chain 20696 chrX 155270560 + 31635678 31636062 L1PA15 4387 + 4001 4366 124984 103 37 35 46 1 0 22 4 0 10 1 0 50 11 8 38 26 19 24 1 0 10 chain 25204 chrX 155270560 + 31659346 31659639 AluSg7 307 + 10 301 103717 122 2 0 169 chain 25237 chrX 155270560 + 31689028 31689318 AluYk4 311 - 11 301 103555 290 chain 267837 chrX 155270560 + 31706256 31709245 L1PA5 6144 + 3152 6144 15302 24 1 0 865 0 1 959 0 1 285 0 1 234 0 1 621 chain 28610 chrX 155270560 + 31733379 31733680 AluYg6 310 + 0 301 90697 301 chain 18640 chrX 155270560 + 31757643 31757892 L1PA8 5853 + 5608 5853 131107 74 1 0 6 2 1 50 1 0 20 2 1 93 chain 127921 chrX 155270560 + 31767277 31768677 L1PA3long 6157 - 15 1415 28592 1400 chain 63620 chrX 155270560 + 31768677 31769368 L1PA3long 6157 + 4059 4750 51055 691 chain 15142 chrX 155270560 + 31778570 31778761 Tigger3a 397 + 142 333 140938 191 chain 25129 chrX 155270560 + 31780406 31780702 AluSc5 308 + 1 301 104135 264 0 4 32 chain 13072 chrX 155270560 + 31787628 31787806 MER30 238 - 8 207 147945 99 5 25 5 2 0 5 0 3 62 chain 70230 chrX 155270560 + 31803576 31804443 L1PA7 6471 - 6 874 48300 6 2 0 145 2 0 5 4 11 21 5 4 652 1 0 24 chain 19878 chrX 155270560 + 31819203 31819567 THE1C 375 - 0 375 127559 126 65 76 103 23 23 47 chain 25154 chrX 155270560 + 31821817 31822106 AluSp 311 - 13 302 103991 289 chain 31842 chrX 155270560 + 31830331 31830686 L1PA4 6152 + 5788 6143 81100 355 chain 21085 chrX 155270560 + 31831416 31831718 THE1B 368 + 0 306 123598 169 1 0 29 0 3 7 20 23 11 1 0 64 chain 39153 chrX 155270560 + 31840898 31841378 LTR10D 510 + 0 510 70537 70 3 16 14 0 1 33 0 16 112 0 2 67 2 0 179 chain 96048 chrX 155270560 + 31845335 31847043 L1PB2 3958 + 369 1774 37806 84 25 24 44 17 13 42 0 1 198 0 3 26 21 25 175 0 1 4 10 13 5 1 0 76 1 2 175 0 4 256 349 28 20 0 2 95 0 4 80 0 1 4 chain 26545 chrX 155270560 + 31903444 31903754 AluY 311 + 0 308 97859 43 1 0 89 0 1 150 2 0 25 chain 99771 chrX 155270560 + 31915044 31916142 L1PA3long 6157 - 0 1101 36837 10 1 4 1087 chain 60834 chrX 155270560 + 31916143 31916809 L1PA3long 6157 + 4403 5069 52414 666 chain 26977 chrX 155270560 + 31918357 31918712 THE1B 368 + 0 368 96352 44 0 15 109 1 0 42 1 0 158 chain 119027 chrX 155270560 + 31925435 31926831 L1PA6 6164 + 4759 6152 31398 131 1 0 107 4 0 50 0 1 268 0 3 522 4 1 176 0 1 133 chain 97377 chrX 155270560 + 31929537 31930783 HSMAR1 1287 + 38 1287 37459 503 21 22 38 1 0 140 0 4 269 2 1 272 chain 39284 chrX 155270560 + 32024893 32025331 L1PA3long 6157 + 5706 6142 70346 118 1 0 191 1 0 127 chain 2805 chrX 155270560 + 32028474 32028595 MER63B 433 + 313 433 228676 18 75 74 28 chain 28117 chrX 155270560 + 32072320 32072630 L1PA4 6152 - 9 319 92582 310 chain 16465 chrX 155270560 + 32088651 32089042 L1PB1 5432 + 5057 5391 136475 46 31 0 13 0 1 21 1 0 9 16 11 9 2 0 52 3 2 16 1 0 44 82 66 23 1 0 21 chain 40099 chrX 155270560 + 32089043 32089492 L1PA4 6152 - 261 711 69185 411 0 1 38 chain 25601 chrX 155270560 + 32089502 32089777 L1PA4 6152 + 5868 6143 101723 275 chain 9733 chrX 155270560 + 32114033 32114147 L1PA4 6152 - 9 123 161921 114 chain 30225 chrX 155270560 + 32115219 32115637 L1PA8 5853 - 6 417 84117 87 1 0 19 2 1 49 1 0 11 1 0 68 21 19 29 1 0 128 chain 50361 chrX 155270560 + 32117430 32118015 L1PA4 6152 + 5562 6152 58748 579 0 5 6 chain 11041 chrX 155270560 + 32120268 32120403 MSTC 436 + 300 435 156049 135 chain 19271 chrX 155270560 + 32154911 32155139 L1PA3long 6157 + 5932 6157 129317 220 3 0 5 chain 11796 chrX 155270560 + 32180142 32180296 L1PA8 5853 + 5701 5853 153058 39 2 1 19 1 0 93 chain 36262 chrX 155270560 + 32193283 32193754 LTR12F 595 + 0 595 74547 91 20 13 13 0 130 118 1 2 228 chain 19012 chrX 155270560 + 32198712 32199083 THE1D 372 - 2 369 130085 116 18 16 5 0 3 6 1 0 13 39 45 75 23 22 11 10 1 54 chain 6601 chrX 155270560 + 32215927 32216089 L1MA8 2339 - 60 212 180441 11 3 0 10 2 1 18 25 28 15 6 0 32 3 0 37 chain 4291 chrX 155270560 + 32240607 32240669 L1PB 1623 + 117 176 203339 52 3 0 7 chain 22924 chrX 155270560 + 32254579 32254914 THE1B 368 + 1 366 115991 43 6 21 104 1 0 11 0 17 102 21 20 47 chain 262782 chrX 155270560 + 32262072 32264928 L1PA2 6032 - 1 2852 15548 223 5 0 2628 chain 27546 chrX 155270560 + 32268976 32269321 L1PA7 6471 + 6128 6469 94517 179 1 2 152 5 0 8 chain 68498 chrX 155270560 + 32274158 32275064 L1P2 5180 - 2582 3460 49039 19 0 4 176 6 1 73 27 0 106 0 1 185 4 3 310 chain 151065 chrX 155270560 + 32275067 32276942 L1PA7 6471 + 4594 6470 24466 39 0 1 4 1 0 192 1 0 257 0 6 8 6 0 39 0 2 5 7 5 179 0 7 8 7 0 278 1 4 467 0 1 365 2 0 9 chain 51238 chrX 155270560 + 32306796 32307509 MER41-int 2638 + 1917 2622 58162 116 2 0 35 0 7 276 1 0 87 7 17 129 40 18 20 chain 234374 chrX 155270560 + 32330738 32333641 L1PA7 6471 + 3504 6470 17074 309 0 4 12 15 0 101 13 11 67 1 40 153 3 0 37 8 9 239 1 2 180 0 4 415 13 14 379 0 6 136 1 4 469 0 1 148 0 1 27 5 26 153 0 1 18 chain 9000 chrX 155270560 + 32341118 32341319 MER2 342 + 6 205 165594 21 63 60 28 5 6 84 chain 15220 chrX 155270560 + 32413514 32413687 L1PA5 6144 + 5959 6132 140716 173 chain 60505 chrX 155270560 + 32417986 32418672 L1P1 4361 - 129 814 52481 82 1 0 603 chain 69753 chrX 155270560 + 32418672 32419453 L1PA3long 6157 + 5371 6152 48490 781 chain 97107 chrX 155270560 + 32423737 32424836 L1PA4 6152 - 1369 2468 37542 1099 chain 124424 chrX 155270560 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49 0 1 362 1 2 255 1 0 241 0 3 184 0 4 38 0 7 467 1 0 426 chain 30888 chrX 155270560 + 32684320 32684731 L1PA8 5853 - 0 407 82705 93 1 0 19 2 1 48 1 0 11 3 2 71 2 0 46 1 0 68 0 3 45 chain 49357 chrX 155270560 + 32701347 32701906 L1PA4 6152 + 5578 6143 59484 550 0 6 9 chain 14518 chrX 155270560 + 32723783 32723940 L1PA4 6152 - 637 794 142827 157 chain 49984 chrX 155270560 + 32723940 32724511 L1PA4 6152 + 5588 6152 59026 411 7 0 153 chain 537545 chrX 155270560 + 32749020 32755038 L1PA3long 6157 + 4 6152 3227 148 0 1 623 0 128 4402 0 1 845 chain 15532 chrX 155270560 + 32797637 32797809 L1PA5 6144 - 179 350 139793 6 1 0 165 chain 11708 chrX 155270560 + 32797848 32797981 L1PA4 6152 + 6004 6143 153428 124 0 6 9 chain 8266 chrX 155270560 + 32801756 32801857 MER2 342 + 145 246 169581 101 chain 274530 chrX 155270560 + 32818679 32822209 L1PA7 6471 - 4 3638 14949 89 7 11 50 12 12 18 10 14 129 1 0 128 4 27 130 0 3 153 8 7 26 0 1 49 0 6 15 0 6 95 1 0 26 1 6 517 1 0 31 10 11 229 0 8 151 0 22 21 0 4 158 0 3 53 3 4 200 11 12 32 0 4 451 1 5 37 12 10 46 0 5 7 0 3 129 3 0 126 1 0 22 6 10 51 0 4 233 2 0 34 chain 23364 chrX 155270560 + 32845777 32846043 AluSp 311 - 12 276 113844 96 1 0 146 1 0 22 chain 32104 chrX 155270560 + 32856379 32856778 L1PA7 6471 - 6 413 80684 32 0 9 287 1 0 79 chain 27950 chrX 155270560 + 32856778 32857138 L1PA7 6471 + 5689 6056 93163 20 5 8 90 0 4 245 chain 14587 chrX 155270560 + 32906273 32906483 L1PA8 5853 - 6 206 142637 87 1 0 16 7 6 39 8 0 11 0 1 6 1 0 34 chain 27741 chrX 155270560 + 32907581 32908007 LTR7B 505 + 0 505 93903 13 0 6 76 0 1 9 0 10 69 35 11 17 0 88 65 1 0 76 14 13 51 chain 3823 chrX 155270560 + 32934954 32934998 L1MA4 2864 + 2766 2810 210033 44 chain 16341 chrX 155270560 + 32935100 32935470 THE1D 372 + 0 372 137365 35 84 83 42 0 1 8 53 55 148 chain 34272 chrX 155270560 + 32947690 32948091 L1PA7 6471 - 10 411 77246 401 chain 49003 chrX 155270560 + 32974022 32974903 L1PA13 3608 - 107 810 59748 9 3 0 24 1 0 20 2 0 4 2 0 17 134 7 22 1 0 4 1 0 6 2 0 52 1 0 32 1 0 31 2 0 108 6 5 31 1 0 35 47 14 282 chain 22489 chrX 155270560 + 33017639 33017915 AluSc8 310 + 26 307 118071 55 0 1 49 0 4 172 chain 41735 chrX 155270560 + 33020350 33020945 MER51A 677 - 8 677 66982 54 1 0 23 1 13 15 1 0 29 1 2 28 2 0 228 0 4 32 8 71 32 1 0 61 1 0 4 0 1 13 1 0 59 chain 53375 chrX 155270560 + 33034004 33034664 PABL_A 660 + 0 660 56789 660 chain 16075 chrX 155270560 + 33061805 33061984 L1PA4 6152 - 0 182 138132 13 0 3 166 chain 34879 chrX 155270560 + 33092094 33092527 MER57A1 433 + 0 433 76365 433 chain 83294 chrX 155270560 + 33099709 33101845 HUERS-P1-int 2401 - 425 2218 42209 37 1 0 14 44 15 12 16 0 9 19 6 5 1 0 10 5 0 18 7 0 7 2 0 7 1 0 10 64 34 17 9 0 15 11 10 13 2 0 18 51 29 28 50 29 37 0 1 13 1 2 44 1 0 78 6 5 8 2 0 41 1 0 7 31 28 12 0 3 68 9 21 26 2 0 79 1 0 4 26 21 11 4 2 25 0 1 21 16 12 38 2 0 6 1 0 11 1 0 144 0 1 33 11 3 43 0 7 57 1 5 12 34 20 87 35 31 17 10 1 13 9 6 24 18 0 23 2 0 11 1 0 35 1 0 5 9 6 37 2 1 14 1 0 11 100 48 15 1 0 6 3 1 14 4 0 34 6 1 12 2 1 24 1 0 4 56 0 18 chain 47380 chrX 155270560 + 33116747 33117331 LTR10C 591 - 7 581 60913 72 0 2 228 14 4 244 2 0 24 chain 33229 chrX 155270560 + 33121391 33122824 LTR7 482 + 0 482 78833 101 15 14 132 991 31 38 0 10 156 chain 13421 chrX 155270560 + 33121639 33121833 LTR7 482 + 278 477 146620 29 0 1 4 4 7 100 13 14 44 chain 4587 chrX 155270560 + 33122422 33122476 LTR7 482 + 0 54 199774 54 chain 10392 chrX 155270560 + 33122499 33122630 LTR7 482 + 115 247 158732 109 0 1 22 chain 48326 chrX 155270560 + 33177405 33177974 L1PA7 6471 - 2 571 60223 251 0 1 4 1 0 313 chain 3212 chrX 155270560 + 33186030 33186087 MIR 256 + 175 231 220701 35 7 6 15 chain 29668 chrX 155270560 + 33208592 33208903 AluYb8 318 - 7 318 85963 311 chain 13182 chrX 155270560 + 33234383 33234568 L1PA16 3655 + 3411 3592 147540 137 1 0 21 11 8 15 chain 6252 chrX 155270560 + 33251396 33251745 L1MD2 1676 + 1173 1518 183150 51 258 254 40 chain 75107 chrX 155270560 + 33260246 33261355 L1PB1 5432 - 8 1090 45965 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 12 10 7 18 18 8 5 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 46 55 7 2 0 216 2 0 257 3 0 98 4 0 183 chain 5549 chrX 155270560 + 33261355 33261461 L1MA8 2339 - 1795 1913 188049 19 15 22 7 0 6 11 2 0 46 0 1 6 chain 3650 chrX 155270560 + 33277638 33277683 Tigger4a 237 - 189 234 212801 45 chain 10437 chrX 155270560 + 33309058 33309176 L1P3 4156 + 3989 4107 158536 118 chain 6899 chrX 155270560 + 33321075 33321329 L1MC1 2226 - 184 438 178197 47 137 143 8 6 0 56 chain 130978 chrX 155270560 + 33322276 33323694 L1PA3long 6157 + 4739 6157 27866 1418 chain 5638 chrX 155270560 + 33334905 33334969 L1MD 993 - 516 580 188676 64 chain 29363 chrX 155270560 + 33382388 33382698 AluYb9 318 - 8 318 87232 310 chain 20282 chrX 155270560 + 33383290 33383507 L1PA2 6032 + 5811 6028 126273 217 chain 61734 chrX 155270560 + 33387945 33388974 L1PB1 5432 - 2 1018 52020 4 1 0 10 1 0 7 6 5 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 15 9 0 13 2 0 15 15 14 33 18 16 51 30 23 12 1 0 19 7 8 62 1 8 7 7 0 196 0 11 191 0 3 20 12 16 179 chain 10107 chrX 155270560 + 33393238 33393350 L1PA5 6144 - 695 808 160059 41 0 1 71 chain 60084 chrX 155270560 + 33393362 33394043 L1PA5 6144 + 5461 6143 52782 349 0 1 332 chain 54642 chrX 155270560 + 33414056 33414726 L1PA7 6471 - 6 677 55940 6 4 0 319 0 3 290 11 13 40 chain 29318 chrX 155270560 + 33424110 33424444 L1P1 4361 + 3418 3752 87450 334 chain 35039 chrX 155270560 + 33424444 33424872 L1PA5 6144 + 5742 6141 76134 246 29 0 153 chain 76377 chrX 155270560 + 33440287 33441127 L1PA3long 6157 - 15 856 45277 132 0 1 708 chain 23939 chrX 155270560 + 33444341 33444673 L1PA13 3608 - 165 490 110697 47 2 0 4 4 0 56 1 0 61 0 1 115 1 0 41 chain 22115 chrX 155270560 + 33448603 33448962 THE1B 368 - 0 368 119726 61 3 1 13 1 0 101 2 0 20 7 6 69 38 53 44 chain 71559 chrX 155270560 + 33459828 33460641 L1PA4 6152 - 1499 2315 47673 272 0 1 505 0 2 36 chain 133347 chrX 155270560 + 33460641 33462121 L1PA4 6152 + 4661 6140 27358 322 1 0 1157 chain 4190 chrX 155270560 + 33482864 33482910 L1PA6 6164 - 2 48 204681 46 chain 43130 chrX 155270560 + 33516353 33516822 L1PA3long 6157 + 5674 6142 65255 224 1 0 244 chain 250575 chrX 155270560 + 33525925 33528983 L1PA6 6164 + 3205 6154 16206 101 5 4 387 2 0 611 0 1 346 105 0 633 5 6 14 1 0 112 1 0 294 7 6 434 chain 20252 chrX 155270560 + 33530363 33530718 L1M1 2793 - 108 466 126370 12 1 0 45 1 0 88 54 64 39 1 0 66 0 3 34 7 0 7 chain 28566 chrX 155270560 + 33533121 33533418 AluYd8 298 + 0 297 90893 297 chain 29247 chrX 155270560 + 33541839 33542177 L1P1 4361 + 4006 4341 87805 145 1 0 154 1 0 23 2 1 12 chain 10994 chrX 155270560 + 33582929 33583048 L1PA5 6144 - 4 123 156224 119 chain 58228 chrX 155270560 + 33586759 33587653 L1PA11 4918 + 3704 4578 53850 364 0 1 99 0 1 114 27 31 14 5 0 55 12 11 13 2 0 67 17 14 20 4 0 9 34 26 9 3 2 13 2 0 11 chain 10421 chrX 155270560 + 33600144 33600286 L1PA7 6471 + 6330 6470 158592 34 9 1 85 0 6 14 chain 9926 chrX 155270560 + 33614020 33614198 L1MA3 4352 - 20 193 160941 4 1 0 9 0 1 4 2 0 26 1 0 5 14 13 12 2 0 53 0 2 23 1 0 21 chain 5517 chrX 155270560 + 33628071 33628150 MADE1 96 - 1 96 189867 47 1 17 31 chain 108157 chrX 155270560 + 33652694 33654022 L1PA7 6471 - 327 1667 34670 7 0 1 143 0 3 43 8 0 232 0 3 10 0 2 26 2 1 50 1 4 76 2 1 25 0 9 210 0 1 493 chain 54967 chrX 155270560 + 33654022 33654651 L1PA7 6471 + 4148 4777 55669 629 chain 45647 chrX 155270560 + 33657541 33658088 L1PA5 6144 - 1 554 62357 12 1 0 135 2 3 21 1 2 77 0 1 45 0 4 253 chain 137085 chrX 155270560 + 33658088 33659611 L1PA5 6144 + 4075 5599 26625 889 0 1 634 chain 10068 chrX 155270560 + 33659844 33659965 L1PA7 6471 - 7 128 160230 121 chain 119220 chrX 155270560 + 33665415 33666970 THE1B-int 1605 - 4 1586 31327 102 1 0 175 5 6 279 25 27 490 1 2 11 1 0 52 0 25 413 chain 14266 chrX 155270560 + 33692546 33692916 L1PB1 5432 - 11 349 143665 4 1 0 13 1 0 12 1 0 22 1 0 26 2 0 12 1 0 5 47 35 4 1 0 8 2 1 43 1 0 15 2 1 23 0 1 18 28 22 10 1 0 8 1 0 23 5 0 8 1 4 20 chain 15026 chrX 155270560 + 33697104 33697445 THE1C 375 - 15 353 141251 142 34 35 38 4 0 6 5 9 10 10 11 11 56 51 25 chain 133988 chrX 155270560 + 33701184 33702683 L1PA4 6152 + 4641 6143 27212 298 0 2 1097 0 1 104 chain 12043 chrX 155270560 + 33706285 33706429 L1M1 2793 - 859 1003 152012 144 chain 13743 chrX 155270560 + 33735969 33736122 L1PA5 6144 - 8 161 145457 153 chain 32172 chrX 155270560 + 33752091 33752460 L1PA7 6471 - 6 372 80576 6 2 0 139 1 0 221 chain 182570 chrX 155270560 + 33758403 33760909 L1PBa1 4058 - 1418 4048 20727 173 4 0 7 1 0 5 6 0 7 13 7 57 0 1 346 0 6 80 0 1 288 1 0 206 11 0 37 0 5 228 16 5 254 9 10 245 18 13 28 14 13 6 0 1 41 49 202 102 0 3 117 1 4 87 23 19 26 chain 31227 chrX 155270560 + 33805907 33806303 MER75 514 - 0 395 82113 21 1 0 374 chain 7111 chrX 155270560 + 33825546 33825625 L1PA4 6152 + 6057 6136 176675 79 chain 278647 chrX 155270560 + 33843298 33847368 L1PA10 4194 - 33 4019 14710 11 1 0 33 3 0 382 0 2 444 2 0 158 4 0 103 12 11 63 1 0 226 3 0 58 0 5 43 1 0 136 0 1 13 0 1 245 0 4 106 0 6 92 1 5 151 4 3 20 7 19 72 0 1 288 15 16 135 63 56 96 1 0 133 0 1 4 1 0 117 18 16 90 18 1 103 28 5 22 7 8 129 0 3 40 2 0 8 2 1 72 1 0 9 14 1 9 0 1 4 2 0 9 1 0 6 2 1 10 1 0 18 2 0 22 1 0 7 76 56 9 1 0 9 2 0 9 13 9 8 2 0 7 16 11 13 chain 26921 chrX 155270560 + 33851527 33852016 L1MA1 4479 - 289 752 96547 19 19 9 11 1 0 9 7 4 8 0 2 12 8 6 32 5 4 117 14 10 88 1 0 13 3 1 19 1 0 71 11 10 6 2 0 12 chain 26240 chrX 155270560 + 33890384 33890722 THE1B 368 - 0 352 99050 196 1 0 113 0 15 28 chain 5367 chrX 155270560 + 33893356 33893421 THE1B 368 + 266 333 191345 33 0 2 32 chain 24163 chrX 155270560 + 33896053 33896452 MER4A1 472 - 10 418 109414 58 9 11 97 0 2 6 64 69 85 1 0 32 0 1 47 chain 27860 chrX 155270560 + 33902130 33902507 THE1C 375 + 0 375 93492 174 22 21 155 1 0 25 chain 45870 chrX 155270560 + 33921002 33921831 L1PREC2 3366 + 2285 3075 62155 16 1 4 449 2 0 46 7 6 44 46 38 17 28 21 25 4 1 11 67 51 5 1 0 35 2 0 5 1 0 4 1 0 12 chain 49077 chrX 155270560 + 33925920 33926766 MER4D1 891 + 0 883 59689 25 3 0 9 24 25 40 4 22 170 0 6 118 1 0 15 1 0 10 65 83 4 0 1 33 0 9 30 1 6 61 42 27 128 3 2 59 chain 75013 chrX 155270560 + 33943934 33945029 MER11B 1079 + 0 1079 46009 219 1 3 212 5 4 19 18 17 22 24 12 15 0 1 12 4 3 4 0 1 50 0 1 125 1 0 10 21 11 29 6 8 16 0 2 29 0 1 53 0 1 169 2 1 29 chain 2907 chrX 155270560 + 33951409 33951446 L1MC4 1079 - 817 854 226910 37 chain 10765 chrX 155270560 + 33955496 33956075 L1MA7 2200 - 755 974 157127 45 4 7 37 402 39 49 0 1 4 1 0 37 chain 7339 chrX 155270560 + 33969585 33969683 L1MA4 2864 + 2549 2647 175161 48 1 0 4 0 1 45 chain 22221 chrX 155270560 + 33971973 33972334 THE1B 368 - 0 368 119257 113 74 82 4 1 0 169 chain 21825 chrX 155270560 + 34016247 34016546 THE1B 368 - 0 297 120920 33 4 8 135 4 0 17 5 3 101 chain 31464 chrX 155270560 + 34016806 34017540 L1PB1 5432 - 13 594 81707 15 1 0 13 1 0 21 1 0 24 2 0 14 8 5 31 2 0 15 1 0 45 6 5 10 2 1 48 75 56 11 5 6 102 1 2 23 0 1 49 2 1 5 0 1 6 118 0 32 3 0 5 3 0 34 chain 10395 chrX 155270560 + 34023506 34023730 L1PA16 3655 - 36 234 158721 16 74 47 17 3 4 114 chain 19508 chrX 155270560 + 34027071 34027306 AluSg7 307 + 38 274 128634 89 1 2 145 chain 34876 chrX 155270560 + 34035684 34036083 L1PA2 6032 + 5635 6032 76370 61 2 1 177 1 0 158 chain 5847 chrX 155270560 + 34061933 34062007 L1PB4 2604 + 2389 2464 186708 50 0 1 24 chain 121844 chrX 155270560 + 34097827 34099393 THE1A-int 1579 - 9 1579 30430 110 1 0 274 8 9 44 1 0 35 5 6 304 31 32 78 1 2 236 0 2 438 chain 28244 chrX 155270560 + 34099393 34099747 THE1A 353 - 0 353 92137 242 1 0 111 chain 29082 chrX 155270560 + 34113043 34113475 L1PB3 3668 + 1846 2244 88623 271 54 20 107 chain 57570 chrX 155270560 + 34113475 34114174 LTR12_ 688 - 0 688 54199 175 1 0 214 0 15 202 25 0 82 chain 37860 chrX 155270560 + 34140303 34140782 MER9a3 513 + 7 513 72329 11 0 26 67 9 10 135 1 0 178 0 1 78 chain 29162 chrX 155270560 + 34142845 34143236 L1PA13 3608 - 1200 1591 88246 370 3 4 6 1 0 11 chain 89480 chrX 155270560 + 34152445 34153449 L1PA5 6144 - 0 1004 39813 1004 chain 102137 chrX 155270560 + 34160686 34161961 L1PA8 5853 - 5 1282 36225 88 1 0 17 4 3 50 1 0 13 1 0 69 2 0 36 9 8 480 0 2 73 0 2 151 0 1 273 0 4 7 chain 51611 chrX 155270560 + 34178571 34179181 L1PA7 6471 + 5857 6468 57885 279 1 2 330 chain 97699 chrX 155270560 + 34184098 34185274 L1PA7 6471 - 10 1194 37248 648 0 2 189 2 1 283 0 7 54 chain 170087 chrX 155270560 + 34185274 34187348 L1PA7 6471 + 3194 5263 22039 384 1 6 118 1 0 134 15 2 131 0 1 304 1 0 27 1 2 104 0 1 49 0 1 259 0 2 70 0 1 40 1 0 125 1 0 308 chain 20202 chrX 155270560 + 34233553 34233978 MSTA 426 + 0 426 126524 28 13 14 17 7 17 26 4 6 91 19 15 11 40 24 24 37 45 108 chain 6058 chrX 155270560 + 34233978 34234053 MSTA-int 1630 + 0 75 184760 75 chain 5938 chrX 155270560 + 34234569 34234642 L1PA15 4387 + 4234 4307 185807 73 chain 43453 chrX 155270560 + 34244342 34245224 MER11C 1089 - 22 1089 64866 26 0 1 150 0 1 53 298 382 88 0 5 99 8 11 105 11 102 44 chain 24556 chrX 155270560 + 34248118 34248476 LTR7 482 - 6 482 107219 43 13 14 113 0 1 10 0 32 40 0 11 61 0 50 42 13 36 23 chain 15033 chrX 155270560 + 34250705 34250927 L1M1 2793 + 2452 2674 141224 177 4 3 10 3 4 28 chain 518212 chrX 155270560 + 34266405 34272030 L1PA2 6032 - 12 6032 5356 890 7 7 21 0 396 4395 1 0 311 chain 22257 chrX 155270560 + 34272370 34272630 L1PA7 6471 - 633 894 119090 138 0 2 77 1 0 44 chain 51258 chrX 155270560 + 34272630 34273226 L1PA7 6471 + 5870 6467 58151 420 0 5 156 1 0 8 3 0 8 chain 26830 chrX 155270560 + 34311938 34312276 THE1C 375 + 17 359 96873 123 0 5 38 1 0 176 chain 25706 chrX 155270560 + 34313860 34314238 THE1C 375 + 0 375 101264 18 4 1 141 34 35 161 1 0 19 chain 9716 chrX 155270560 + 34338338 34338466 MER85 139 - 0 139 162005 39 0 10 19 0 1 70 chain 11920 chrX 155270560 + 34342116 34342351 L1PB2 3958 + 3579 3812 152513 25 18 17 60 2 3 31 20 21 12 3 1 26 2 1 36 chain 3297 chrX 155270560 + 34351362 34351427 Tigger3b 1229 + 510 571 219056 33 4 5 14 5 0 9 chain 209519 chrX 155270560 + 34362093 34364645 L1PA8A 6298 + 3704 6276 18520 170 1 3 447 0 13 18 0 2 468 1 0 35 1 2 627 1 2 87 1 2 367 1 0 190 0 2 137 chain 179140 chrX 155270560 + 34385370 34387966 L1PB2 3958 + 1250 3838 21062 49 0 4 13 4 8 147 20 23 81 3 0 5 0 3 9 7 0 173 8 6 42 7 8 93 4 3 39 4 6 456 3 0 6 1 7 50 3 0 235 8 10 19 7 8 30 0 1 136 7 6 383 2 0 51 2 1 13 5 0 77 4 0 18 0 4 70 3 2 72 1 0 62 1 0 62 12 9 24 5 4 60 chain 58952 chrX 155270560 + 34392271 34393274 L1MA1 4479 + 3179 4156 53428 72 1 0 12 5 0 71 60 57 119 5 3 202 1 0 9 12 11 4 1 0 16 1 0 7 1 2 6 0 3 20 7 5 28 1 0 14 2 0 19 1 0 88 1 0 5 3 0 126 10 9 20 2 0 35 2 1 8 1 0 5 chain 22518 chrX 155270560 + 34411265 34411506 L1PA2 6032 - 252 493 117949 241 chain 22749 chrX 155270560 + 34411506 34411749 L1PA2 6032 + 5788 6031 116831 243 chain 539638 chrX 155270560 + 34433307 34439279 L1PA3long 6157 + 4 6150 2873 147 1 2 73 0 37 513 0 128 1325 0 7 3063 0 1 850 chain 3059 chrX 155270560 + 34441727 34441762 L1PA3long 6157 + 3710 3745 223839 35 chain 69709 chrX 155270560 + 34442648 34444146 L1PA4 6152 + 5364 6143 48520 520 719 0 259 chain 3717 chrX 155270560 + 34444748 34444872 LTR16E2 555 + 431 553 211682 14 5 0 7 58 61 40 chain 62128 chrX 155270560 + 34452252 34452954 L1PA4 6152 - 9 712 51841 173 0 1 529 chain 40769 chrX 155270560 + 34458627 34459175 L1PB1 5432 - 1736 2285 68217 29 1 0 88 5 6 278 4 5 143 chain 112609 chrX 155270560 + 34459490 34461034 THE1A-int 1579 - 8 1579 33501 70 0 2 250 21 24 19 34 37 149 6 7 332 36 30 8 0 9 16 14 13 10 0 16 579 chain 25284 chrX 155270560 + 34461034 34461389 THE1A 353 - 0 353 103296 234 2 0 6 0 2 17 8 7 39 0 1 33 2 0 14 chain 112735 chrX 155270560 + 34461391 34463222 L1PB1 5432 + 3778 5420 33466 150 0 1 221 2 1 72 0 12 170 1 0 188 0 3 32 14 9 71 1 0 40 1 0 347 14 10 9 160 0 24 1 0 5 20 15 10 2 0 40 1 0 12 2 1 16 2 1 37 6 5 14 26 14 19 8 5 14 2 0 24 10 9 12 1 0 13 1 0 16 chain 89842 chrX 155270560 + 34475752 34476799 L1P1 4361 + 4 1050 39708 1030 1 0 16 chain 24199 chrX 155270560 + 34506441 34506751 L1PA2 6032 - 0 272 109222 10 38 0 262 chain 19327 chrX 155270560 + 34514140 34514419 L1PA4 6152 + 5866 6139 129153 131 7 0 41 0 1 40 36 0 6 0 36 18 chain 16914 chrX 155270560 + 34514967 34515146 L1PA3long 6157 + 5835 6014 135814 179 chain 12588 chrX 155270560 + 34515146 34515287 L1PA3long 6157 + 6015 6156 149894 141 chain 22976 chrX 155270560 + 34516562 34516828 AluSx4 309 + 1 267 115732 266 chain 24460 chrX 155270560 + 34520884 34521179 AluSp 311 + 10 305 107754 115 2 0 151 3 5 24 chain 60716 chrX 155270560 + 34526499 34527284 L1PB 1623 + 742 1516 52462 545 0 1 17 1 0 141 1 0 7 3 1 30 11 7 10 5 1 14 chain 24994 chrX 155270560 + 34562044 34562329 AluYc 301 + 0 281 104827 116 4 0 165 chain 20944 chrX 155270560 + 34569401 34569770 THE1D 372 + 11 372 124138 42 9 0 21 3 0 6 28 32 54 1 0 15 17 19 21 4 3 148 chain 5926 chrX 155270560 + 34570229 34570309 LOR1b 457 - 368 457 185931 48 1 10 31 chain 183180 chrX 155270560 + 34572011 34574675 MER57-int 2662 + 40 2662 20660 30 57 38 35 0 1 38 1 0 120 2 0 12 8 6 199 0 3 232 0 1 64 2 0 222 1 0 46 1 5 302 7 5 442 17 0 13 0 2 52 3 0 160 11 31 173 4 5 50 13 10 87 18 12 19 5 19 27 22 10 7 2 0 25 1 0 7 1 0 4 8 5 24 1 0 6 17 12 23 4 1 31 2 0 6 chain 62192 chrX 155270560 + 34581008 34581770 MER4E 760 - 0 760 51810 20 0 15 190 11 0 7 7 0 504 0 1 23 chain 25071 chrX 155270560 + 34587037 34587400 THE1B 368 - 1 361 104453 74 1 0 117 6 4 25 13 10 95 0 5 24 2 0 6 chain 33282 chrX 155270560 + 34587439 34587879 LTR7 482 + 0 474 78754 101 15 14 29 0 3 116 1 32 70 5 6 103 chain 119344 chrX 155270560 + 34587889 34589443 THE1B-int 1605 - 27 1605 31284 65 1 0 602 11 5 450 1 26 165 0 2 147 0 3 64 23 24 25 chain 25078 chrX 155270560 + 34626550 34626860 MER4E1 777 - 459 770 104420 296 1 2 13 chain 7806 chrX 155270560 + 34626867 34626959 MER57A1 433 - 341 433 172275 92 chain 31052 chrX 155270560 + 34666021 34666574 L1PREC2 3366 + 2428 2963 82436 51 2 0 50 8 10 141 0 10 25 1 2 30 1 0 5 2 0 54 1 0 44 1 0 3 6 0 11 32 24 12 2 0 6 3 0 15 12 10 21 3 0 11 chain 2938 chrX 155270560 + 34689922 34689953 Tigger4a 237 + 206 237 226385 31 chain 23725 chrX 155270560 + 34701070 34701371 THE1C 375 + 37 335 111908 88 3 0 210 chain 97423 chrX 155270560 + 34706356 34710974 L1MA1 4479 - 372 4237 37448 14 0 8 7 1 0 30 12 9 87 3 0 5 1 0 88 2 1 12 2 0 20 1 0 51 12 12 8 1 0 16 2 0 25 1 0 154 0 1 41 2 0 31 1 0 91 3052 2288 128 6 5 191 4 0 32 8 9 63 0 3 45 0 20 57 0 1 54 5 7 130 4 5 79 2 0 37 chain 11765 chrX 155270560 + 34739636 34739928 L1PB1 5432 - 12 275 153196 16 1 0 14 1 0 20 1 0 11 22 20 7 1 0 5 2 0 30 14 1 12 8 7 32 13 8 16 2 1 13 4 5 35 2 0 10 chain 23199 chrX 155270560 + 34755458 34755912 L1PA13 3608 - 60 489 114683 7 2 0 6 1 0 14 6 0 3 1 0 18 25 15 19 1 0 18 2 0 5 2 0 35 24 21 25 4 0 27 1 0 62 2 0 64 0 11 8 0 1 23 7 6 28 1 0 13 chain 21550 chrX 155270560 + 34766418 34766665 L1PA5 6144 + 5897 6144 121964 247 chain 72400 chrX 155270560 + 34792436 34793359 L1PA8 5853 + 4944 5853 47304 592 0 1 27 1 0 36 11 8 92 13 4 36 2 1 19 1 0 93 chain 70762 chrX 155270560 + 34793952 34794832 L1PA7 6471 - 12 899 48033 319 0 3 6 11 13 41 4 3 451 1 4 47 chain 8179 chrX 155270560 + 34794834 34794936 L1PA7 6471 + 5481 5584 170070 16 0 1 86 chain 58674 chrX 155270560 + 34803146 34803819 L1PA5 6144 - 61 737 53595 35 0 1 58 1 3 579 chain 10921 chrX 155270560 + 34810859 34811083 L1PA15 4387 - 21 232 156524 10 1 0 23 32 22 41 6 10 43 2 1 10 4 0 21 1 0 30 chain 79631 chrX 155270560 + 34814140 34815162 MER11C 1089 + 0 1056 43765 220 0 5 34 0 3 57 1 18 188 0 1 8 17 16 36 12 13 169 6 14 274 chain 78017 chrX 155270560 + 34818391 34819524 HERVK11-int 2540 + 1155 2245 44504 18 8 7 8 3 0 27 10 0 13 11 10 15 12 1 36 21 1 353 0 1 74 17 12 104 1 0 190 6 5 74 5 9 119 0 5 8 chain 84389 chrX 155270560 + 34820506 34821524 MER11B 1079 + 1 1042 41756 224 0 1 64 0 3 23 1 18 430 3 5 273 chain 75963 chrX 155270560 + 34837471 34838276 L1HS 6032 - 0 805 45504 805 chain 49786 chrX 155270560 + 34838276 34838803 L1HS 6032 + 4682 5209 59036 527 chain 76905 chrX 155270560 + 34840886 34842074 L1PB 1623 + 356 1525 45025 49 4 3 5 1 0 69 9 8 131 19 20 96 20 2 43 1 4 322 23 25 7 0 8 157 1 0 141 1 0 7 2 1 26 12 8 13 4 0 14 1 0 10 chain 22884 chrX 155270560 + 34859237 34859513 L1PA8 5853 - 254 530 114983 36 1 0 47 3 4 189 chain 81270 chrX 155270560 + 34859513 34860576 L1PA8 5853 + 4793 5853 43057 150 0 1 54 0 1 4 1 0 4 0 2 75 0 2 465 12 11 48 2 0 72 1 0 5 3 1 50 9 8 14 3 2 91 chain 113975 chrX 155270560 + 34863047 34864467 L1PA8A 6298 - 10 1436 33100 447 5 11 345 1 0 132 0 1 82 10 11 123 2 0 118 0 1 44 0 6 6 6 0 99 chain 9444 chrX 155270560 + 34864472 34864578 L1P3 4156 + 3766 3872 163341 106 chain 40947 chrX 155270560 + 34930577 34931295 L1PB1 5432 + 4717 5404 67978 77 18 19 25 1 0 265 3 2 8 2 1 24 8 6 10 12 8 6 2 0 52 2 1 16 1 0 45 1 0 12 52 38 14 2 0 24 1 0 22 1 0 12 chain 13368 chrX 155270560 + 34952031 34952392 L1PA13 3608 + 114 460 146822 22 6 7 19 116 106 23 2 0 118 15 14 5 1 0 17 2 0 15 chain 26788 chrX 155270560 + 34959477 34959789 AluYk4 311 + 0 310 97017 281 2 0 29 chain 20459 chrX 155270560 + 35010021 35010243 L1PA3long 6157 + 5935 6157 125734 222 chain 4324 chrX 155270560 + 35010585 35010636 MER4D 903 - 102 153 202906 51 chain 57995 chrX 155270560 + 35040630 35041390 MER4E1 777 - 7 777 53978 219 9 15 170 0 1 122 0 12 129 5 1 77 5 0 24 chain 74607 chrX 155270560 + 35086265 35087106 L1PA5 6144 - 5 845 46206 248 1 0 592 chain 54067 chrX 155270560 + 35087108 35087719 L1PA5 6144 + 4696 5308 56309 597 0 1 14 chain 73696 chrX 155270560 + 35088385 35089302 L1PA8A 6298 - 7 933 46678 101 1 2 4 0 1 191 0 2 495 2 6 19 0 1 104 chain 77474 chrX 155270560 + 35089307 35090252 L1PA8A 6298 + 4263 5211 44750 186 1 0 98 0 4 149 1 0 190 0 1 320 chain 36148 chrX 155270560 + 35108299 35108786 MER9a3 513 + 15 513 74710 4 0 1 236 19 18 109 21 31 21 0 1 77 chain 24022 chrX 155270560 + 35118974 35119262 L1PA5 6144 - 0 288 110205 151 0 5 6 6 1 125 chain 93038 chrX 155270560 + 35132209 35133279 MER11C 1089 + 0 1073 38648 525 0 1 73 0 1 326 1 2 145 chain 310861 chrX 155270560 + 35151301 35155654 L1PA11 4918 - 411 4615 12966 19 4 3 13 2 0 65 2 0 13 9 8 58 5 0 104 0 2 82 6 0 124 6 8 5 1 0 500 2 0 15 0 20 74 0 1 186 0 1 401 6 7 74 27 5 67 21 20 4 0 1 80 7 0 516 0 1 4 2 1 211 0 1 177 40 41 236 6 7 289 1 0 4 0 1 175 4 0 235 138 6 165 0 3 122 0 3 46 chain 33857 chrX 155270560 + 35156106 35156496 L1PA5 6144 - 2722 3110 77455 126 2 0 262 chain 234007 chrX 155270560 + 35156496 35159111 L1PA5 6144 + 3539 6144 17088 541 4 0 1563 0 2 24 0 2 319 9 0 42 1 0 112 chain 10449 chrX 155270560 + 35200043 35200347 L1PA11 4918 - 289 557 158495 18 2 0 6 112 88 9 4 0 13 3 0 6 0 2 14 2 0 66 2 0 13 2 1 32 chain 6158 chrX 155270560 + 35212161 35212278 L1MB3 1562 - 1425 1542 183914 64 1 0 9 21 22 22 chain 35415 chrX 155270560 + 35218155 35218565 L1P1 4361 + 3931 4341 75664 217 0 2 155 1 0 23 2 1 12 chain 219990 chrX 155270560 + 35239536 35241993 L1HS 6032 + 0 2456 17879 137 0 1 118 2 0 2200 chain 11671 chrX 155270560 + 35286230 35286369 L1PREC2 3366 - 1255 1394 153593 139 chain 8662 chrX 155270560 + 35286812 35286937 L1PB1 5432 + 5161 5281 167414 6 2 0 18 1 0 35 2 1 16 1 0 44 chain 100066 chrX 155270560 + 35288529 35289617 L1PA3long 6157 + 5070 6157 36758 932 1 0 155 chain 223643 chrX 155270560 + 35290713 35293715 MER61-int 3695 - 254 3319 17675 78 19 20 17 4 0 165 2 0 9 3 0 126 10 9 138 31 30 84 1 0 142 24 14 49 4 1 134 0 1 203 6 5 109 0 4 356 0 79 191 0 1 71 0 5 120 2 1 54 0 3 98 8 5 201 0 1 275 2 0 95 0 4 6 5 0 125 1 2 34 chain 17331 chrX 155270560 + 35302759 35303064 THE1C 375 - 34 348 134710 91 57 66 67 5 4 64 1 2 20 chain 2502 chrX 155270560 + 35322861 35322908 THE1C-int 1605 + 157 201 233123 13 10 7 24 chain 43932 chrX 155270560 + 35328436 35328949 MER9a2 513 - 0 513 64291 513 chain 3655 chrX 155270560 + 35331306 35331350 MLT1B 390 + 319 363 212672 44 chain 218776 chrX 155270560 + 35332938 35335297 L1PA2 6032 - 1 2360 17958 2359 chain 54341 chrX 155270560 + 35341421 35342314 L1MA1 4479 + 3279 4148 56138 37 4 0 4 1 0 68 7 5 120 7 5 33 12 5 20 0 1 138 1 0 24 2 0 8 0 1 7 5 4 67 30 33 88 9 5 126 1 0 7 4 3 19 7 5 30 1 0 6 chain 132789 chrX 155270560 + 35349494 35351422 L1PA8A 6298 - 7 1657 27461 341 4 0 377 1 0 18 303 0 62 1 5 311 0 23 329 1 0 128 5 9 47 chain 25882 chrX 155270560 + 35363104 35363449 MER4-int 2692 - 0 355 100522 118 0 10 54 2 1 15 1 3 29 4 3 122 chain 53444 chrX 155270560 + 35363850 35364477 L1PA5 6144 - 3 637 56728 208 0 1 215 0 2 71 2 8 124 2 0 5 chain 29316 chrX 155270560 + 35415566 35415940 THE1C 375 - 0 375 87456 188 4 5 182 chain 121343 chrX 155270560 + 35415947 35417519 THE1C-int 1605 - 7 1604 30580 287 11 14 127 2 0 210 1 6 23 7 13 204 5 4 23 8 9 7 1 0 207 12 19 110 1 7 312 1 2 13 chain 12118 chrX 155270560 + 35417559 35417708 THE1C 375 - 39 188 151747 149 chain 12695 chrX 155270560 + 35417709 35417891 THE1C 375 - 190 375 149465 102 20 23 60 chain 10286 chrX 155270560 + 35419327 35419466 L1P4 1494 + 682 816 159202 85 1 0 18 4 0 31 chain 70363 chrX 155270560 + 35432299 35433143 L1PA6 6164 - 2 853 48232 9 0 1 110 4 0 38 1 11 682 chain 57263 chrX 155270560 + 35448702 35449573 MER4E 760 - 9 760 54360 106 0 19 61 148 0 271 0 1 4 0 4 16 1 0 4 0 1 101 0 2 144 1 3 14 chain 61976 chrX 155270560 + 35449629 35450401 MER4E1 777 - 4 777 51909 61 0 1 161 1 9 518 8 0 23 chain 16515 chrX 155270560 + 35451259 35451832 MER4B 649 - 380 649 136875 34 335 9 9 0 23 169 6 5 20 chain 24440 chrX 155270560 + 35458348 35458663 MER4E 760 + 441 755 107863 92 7 5 145 1 2 70 chain 7654 chrX 155270560 + 35460746 35460839 MER4B 649 - 550 643 173194 93 chain 36837 chrX 155270560 + 35461069 35461531 LTR2B 499 - 0 490 73754 162 0 1 19 1 0 8 0 1 179 0 19 45 1 0 31 0 10 10 1 0 5 chain 25585 chrX 155270560 + 35469912 35470255 THE1A 353 + 0 341 101801 84 0 1 4 1 0 21 1 0 93 3 5 6 3 0 127 chain 45326 chrX 155270560 + 35480388 35480968 LTR10C 591 + 11 591 62686 23 3 1 474 5 2 18 7 12 50 chain 98011 chrX 155270560 + 35517209 35518591 LTR12C 1709 + 0 1513 37276 23 1 0 225 1 0 90 0 43 80 61 16 129 0 1 43 0 119 68 1 0 249 17 64 58 24 0 16 11 4 285 chain 6375 chrX 155270560 + 35531391 35531549 MER21A 919 + 54 203 182209 27 40 44 30 1 0 16 18 6 26 chain 122749 chrX 155270560 + 35549866 35551735 L1PA10 4194 + 175 1982 30138 13 2 0 11 3 0 7 3 1 9 11 8 8 2 0 10 1 0 8 1 0 7 19 17 13 1 0 7 45 19 23 2 0 20 1 0 6 3 2 10 1 0 8 20 0 13 0 1 4 7 8 80 4 2 34 14 17 319 0 1 212 2 1 238 0 1 100 1 0 43 16 15 103 4 0 193 2 10 205 chain 24912 chrX 155270560 + 35554431 35554744 AluSp 311 - 5 311 105265 186 1 0 79 10 4 37 chain 59514 chrX 155270560 + 35554989 35555744 MER4E1 777 - 7 775 53095 108 13 14 98 1 9 77 1 2 174 1 0 54 0 3 205 1 2 22 chain 111576 chrX 155270560 + 35572335 35573906 L1PA11 4918 + 3038 4567 33786 4 0 1 174 0 1 316 0 1 508 18 9 272 0 1 4 30 12 7 0 1 15 9 9 20 2 1 10 2 0 70 2 0 10 5 4 20 4 0 9 31 22 15 1 0 13 chain 26431 chrX 155270560 + 35588308 35588601 L1PA4 6152 + 5853 6146 98303 293 chain 5686 chrX 155270560 + 35601034 35601126 AluSq2 311 + 217 303 188240 48 5 6 25 7 0 7 chain 26143 chrX 155270560 + 35604568 35604949 THE1C 375 - 0 375 99434 26 1 0 151 26 23 38 1 0 23 7 6 108 chain 188786 chrX 155270560 + 35614350 35617273 L1PB1 5432 + 2779 5422 20165 63 2 1 41 0 2 33 0 1 47 0 1 735 11 38 221 2 0 137 2 0 530 2 1 420 0 8 45 281 2 9 3 0 19 32 26 9 2 0 52 6 5 12 1 0 45 75 59 5 2 0 24 1 0 22 1 0 12 1 0 18 chain 23565 chrX 155270560 + 35627541 35627877 LTR7B 505 + 32 441 112769 76 0 10 66 35 11 17 0 88 65 1 0 76 chain 6283 chrX 155270560 + 35640512 35640587 LTR47A 437 + 310 385 182933 75 chain 36941 chrX 155270560 + 35640717 35641158 LTR22A 463 + 0 441 73599 441 chain 44279 chrX 155270560 + 35646917 35647649 L1PA11 4918 - 289 986 63846 18 47 33 11 2 0 12 30 25 10 19 13 18 1 0 17 2 0 66 3 0 12 2 1 8 0 3 25 3 0 211 2 1 13 2 1 4 0 1 194 chain 536770 chrX 155270560 + 35648525 35654939 L1PA7 6471 - 1 6471 3343 201 0 2 64 0 2 571 7 3 6 1 0 130 1 6 813 0 4 413 17 13 745 14 13 384 0 4 575 0 2 52 0 6 84 0 16 252 0 2 77 0 1 124 0 1 126 5 6 78 0 4 408 0 2 483 0 13 380 0 1 403 chain 45753 chrX 155270560 + 35663299 35663807 MER9a1 513 - 5 513 62272 508 chain 21084 chrX 155270560 + 35689843 35690150 L1PA16 3655 - 66 381 123608 13 3 0 73 1 0 21 9 23 169 2 0 16 chain 9192 chrX 155270560 + 35694639 35694863 L1PB1 5432 + 5221 5422 164596 16 1 0 40 7 6 13 14 1 30 36 31 12 1 0 21 1 0 13 1 0 18 chain 18291 chrX 155270560 + 35698152 35698390 L1PA7 6471 - 2 243 132099 11 0 2 134 8 9 85 chain 58554 chrX 155270560 + 35712738 35713506 MER4E1 777 + 0 769 53673 21 1 2 441 0 1 22 1 5 46 9 7 6 2 0 73 4 3 142 chain 2916 chrX 155270560 + 35737807 35737839 U2 167 - 135 167 226743 32 chain 3440 chrX 155270560 + 35741103 35741142 MLT2B2 565 - 1 40 216387 39 chain 2998 chrX 155270560 + 35741860 35741893 HSMAR1 1287 - 1254 1287 225065 33 chain 5950 chrX 155270560 + 35771292 35771363 LTR8 732 - 123 194 185673 71 chain 3684 chrX 155270560 + 35840401 35840446 LTR49 580 + 372 417 212169 45 chain 43515 chrX 155270560 + 35841547 35842104 MER4A 717 + 125 678 64789 516 13 9 28 chain 48352 chrX 155270560 + 35843064 35843849 L1PA14 3548 - 92 856 60208 42 1 0 18 7 5 13 4 2 35 11 6 30 1 0 84 1 0 84 1 0 6 2 0 17 2 0 5 12 5 15 6 14 70 2 0 5 2 0 44 0 1 4 2 0 8 9 8 148 1 2 46 1 0 20 0 1 26 chain 61414 chrX 155270560 + 35848639 35849588 L1PB1 5432 - 11 920 52145 7 1 0 10 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 17 24 13 14 1 0 45 22 20 49 18 12 12 3 2 4 1 0 32 8 3 298 4 1 178 1 0 114 chain 5063 chrX 155270560 + 35850672 35850761 L1PB1 5432 + 5177 5263 194508 29 1 0 14 18 16 27 chain 16056 chrX 155270560 + 35885374 35885592 THE1B 368 + 151 368 138197 21 13 12 184 chain 51132 chrX 155270560 + 35888802 35889362 L1PA4 6152 - 9 569 58231 560 chain 23254 chrX 155270560 + 35897082 35897362 AluSp 311 - 23 303 114424 280 chain 5995 chrX 155270560 + 35908847 35909109 LTR41 747 + 5 304 185288 31 32 33 30 39 43 21 61 31 12 10 72 26 chain 22263 chrX 155270560 + 35913618 35913894 AluSx4 309 + 27 300 119061 148 0 1 51 8 4 69 chain 10256 chrX 155270560 + 35919204 35919353 L1MA2 4263 - 209 356 159343 89 9 7 51 chain 95666 chrX 155270560 + 35919353 35920534 L1P3 4156 + 2959 4137 37911 357 0 1 703 1 0 87 2 0 7 2 1 22 chain 40084 chrX 155270560 + 35934918 35935355 L1PA3long 6157 + 5710 6147 69204 437 chain 22838 chrX 155270560 + 35941668 35941945 AluSc 308 + 13 289 116401 15 1 0 261 chain 5158 chrX 155270560 + 35946046 35946109 L1MD2 1676 - 275 338 193465 63 chain 105263 chrX 155270560 + 35957413 35958558 L1PA3long 6157 - 0 1145 35435 1145 chain 14708 chrX 155270560 + 35966116 35966336 MER30 238 - 0 238 142247 29 13 10 66 6 27 106 chain 160615 chrX 155270560 + 36004197 36006181 L1P3 4156 - 2167 4153 23249 778 0 4 93 0 1 330 4 1 175 14 15 121 0 1 150 1 0 58 26 25 234 chain 26640 chrX 155270560 + 36021714 36022072 L1PREC2 3366 + 2043 2412 97511 116 0 1 105 0 8 113 10 12 14 chain 23690 chrX 155270560 + 36029835 36030127 L1PA8 5853 - 862 1155 111648 108 1 2 183 chain 60555 chrX 155270560 + 36030127 36030947 L1PA8 5853 + 5028 5853 52537 22 0 8 18 9 11 350 0 1 126 1 0 37 8 7 62 0 2 6 23 19 43 2 1 19 1 0 93 chain 33587 chrX 155270560 + 36039633 36040055 L1PA8 5853 - 3 421 78264 90 1 0 19 3 2 51 1 0 8 1 0 72 2 0 44 1 0 40 0 3 89 chain 7854 chrX 155270560 + 36040055 36040147 U6 107 - 0 92 171963 92 chain 3348 chrX 155270560 + 36054675 36054712 L1MA9 1812 - 196 233 218079 37 chain 22520 chrX 155270560 + 36059788 36060065 AluSc8 310 + 30 307 117937 277 chain 4429 chrX 155270560 + 36066831 36066908 MADE1 96 - 5 96 201594 33 13 27 31 chain 110975 chrX 155270560 + 36068270 36069894 THE1B-int 1605 + 0 1605 33939 12 5 4 100 15 14 4 0 1 18 54 0 117 20 26 99 0 64 187 0 1 258 0 3 5 13 10 32 14 15 121 42 4 303 0 1 90 0 1 115 chain 22484 chrX 155270560 + 36073802 36074254 L1PA11 4918 - 289 714 118091 17 52 48 10 5 4 11 13 9 10 8 3 9 4 0 20 1 0 13 2 0 69 3 0 12 2 1 68 1 0 70 2 1 50 chain 20352 chrX 155270560 + 36093935 36094242 L1PA16 3655 - 187 497 126057 8 0 2 143 36 38 73 1 0 46 chain 104343 chrX 155270560 + 36097814 36099052 L1PA6 6164 + 4922 6159 35657 393 1 0 188 6 8 69 1 0 567 1 0 12 chain 171526 chrX 155270560 + 36144222 36146274 L1PA7 6471 - 17 2064 21879 89 15 7 19 1 0 207 0 1 19 4 3 485 0 3 710 0 1 503 chain 8740 chrX 155270560 + 36153186 36153398 L1PB1 5432 + 5236 5407 166975 44 1 0 16 3 0 6 16 6 17 26 21 24 1 0 21 1 0 8 20 0 8 chain 541680 chrX 155270560 + 36188421 36194441 L1PA3long 6157 - 4 6156 2562 61 0 1 149 0 1 4806 1 3 228 0 128 38 1 0 573 12 13 151 chain 25617 chrX 155270560 + 36222412 36222700 L1PA4 6152 + 5856 6146 101634 36 0 1 110 0 1 142 chain 48327 chrX 155270560 + 36233754 36234312 LTR22 571 + 0 571 60222 27 0 13 531 chain 33978 chrX 155270560 + 36237648 36238114 MER4A1 472 + 0 472 77646 226 1 22 20 17 7 121 14 9 67 chain 557557 chrX 155270560 + 36247729 36253882 L1PA3long 6157 - 0 6153 549 683 0 1 838 1 0 1458 1 0 780 0 1 541 1 0 103 0 1 1440 1 0 8 0 1 298 chain 23027 chrX 155270560 + 36256209 36256566 THE1B 368 + 0 368 115502 169 1 0 23 2 0 6 9 16 10 8 16 59 14 13 56 chain 61713 chrX 155270560 + 36279440 36280130 SVA_C 1631 - 0 687 52035 613 1 0 16 1 0 52 1 0 6 chain 3558 chrX 155270560 + 36295865 36295905 MER3 215 + 174 214 214354 40 chain 69610 chrX 155270560 + 36295939 36296838 L1P2 5180 - 4286 5178 48569 101 1 0 6 1 0 272 1 0 50 10 9 203 7 6 53 2 1 42 2 1 148 chain 21303 chrX 155270560 + 36312573 36312821 AluY 311 + 30 277 122843 103 1 0 144 chain 56953 chrX 155270560 + 36316058 36316679 L1PA3long 6157 + 5531 6152 54560 621 chain 29414 chrX 155270560 + 36346643 36346955 AluYb9 318 + 0 312 87006 312 chain 9606 chrX 155270560 + 36354117 36354283 MER73 639 + 0 172 162567 76 8 16 25 18 17 23 1 0 15 chain 27089 chrX 155270560 + 36360925 36361291 L1PA8 5853 - 6 361 95973 58 8 3 45 2 1 52 1 0 9 1 0 71 2 0 44 1 0 72 chain 41420 chrX 155270560 + 36361297 36361818 L1PA8 5853 + 4937 5466 67392 8 0 4 56 1 3 72 8 7 50 0 1 139 1 3 186 chain 26880 chrX 155270560 + 36361905 36362193 L1PA2 6032 - 169 457 96699 288 chain 14869 chrX 155270560 + 36362193 36362358 L1PA2 6032 + 5867 6032 141717 165 chain 93708 chrX 155270560 + 36364913 36366057 L1PA6 6164 + 5014 6162 38437 278 0 4 98 3 4 156 0 3 175 0 1 423 5 0 6 chain 35641 chrX 155270560 + 36388219 36388645 L1PA6 6164 - 4 430 75352 6 3 0 256 0 3 161 chain 81072 chrX 155270560 + 36394746 36395667 L1PA5 6144 - 6 927 43152 106 1 0 226 0 1 588 chain 15310 chrX 155270560 + 36403573 36403933 L1MA8 2339 - 74 394 140461 8 1 0 24 7 5 32 6 0 32 6 0 43 65 43 58 21 20 46 2 0 9 chain 327545 chrX 155270560 + 36433256 36437110 L1PA6 6164 - 10 6164 12291 151 1 11 163 0 16 324 0 1 171 1 2 329 0 1 200 0 1 127 0 1 144 0 1 660 0 2247 780 0 17 240 1 0 47 0 2 310 0 2 37 0 1 168 chain 47562 chrX 155270560 + 36441929 36442563 MER41B 635 + 0 635 60798 43 0 1 81 4 5 326 20 19 160 chain 32345 chrX 155270560 + 36447383 36447741 L1PA2 6032 - 2 361 80280 127 0 1 231 chain 33354 chrX 155270560 + 36449159 36449697 HSMAR2 1300 - 762 1297 78643 19 0 1 33 8 13 66 0 1 30 3 0 6 25 29 32 7 4 156 21 16 6 3 0 123 chain 81566 chrX 155270560 + 36450788 36451747 LTR13_ 950 - 0 950 42946 83 0 2 258 11 0 607 chain 9275 chrX 155270560 + 36452146 36452259 MER50 708 - 33 146 164187 113 chain 554372 chrX 155270560 + 36483274 36489300 L1PA2 6032 - 0 6032 901 75 2 0 2508 0 9 3184 1 0 256 chain 61388 chrX 155270560 + 36505628 36506308 L1PA4 6152 + 5468 6148 52157 680 chain 48677 chrX 155270560 + 36506470 36507062 L1PA7 6471 + 5884 6467 59975 522 0 2 15 12 1 43 chain 44715 chrX 155270560 + 36563955 36564468 MER9a2 513 - 0 513 63366 513 chain 120018 chrX 155270560 + 36565720 36567083 L1PA5 6144 - 1 1371 31053 10 1 2 433 1 2 376 6 7 12 0 4 524 chain 10214 chrX 155270560 + 36570146 36570272 THE1C 375 + 250 375 159546 99 1 0 26 chain 7469 chrX 155270560 + 36589024 36589120 MER85 139 - 0 106 174352 40 0 10 56 chain 43641 chrX 155270560 + 36593747 36594330 LTR26E 604 - 8 594 64642 39 11 12 348 5 7 180 chain 6109 chrX 155270560 + 36595482 36595562 MADE1 96 - 0 96 184349 45 2 18 33 chain 3940 chrX 155270560 + 36598761 36598811 MLT1C 463 - 348 400 208268 11 0 2 39 chain 69121 chrX 155270560 + 36607563 36608356 L1PA5 6144 - 4 799 48752 381 0 1 60 1 2 351 chain 275970 chrX 155270560 + 36614288 36617337 L1PA3long 6157 - 1 3059 14875 408 0 1 418 0 1 14 0 4 433 1 0 519 0 4 1256 chain 18124 chrX 155270560 + 36617337 36617533 L1PA3long 6157 + 2889 3085 132054 196 chain 7011 chrX 155270560 + 36630369 36630447 L1PA4 6152 - 371 449 177385 78 chain 33476 chrX 155270560 + 36630447 36630817 L1PA4 6152 + 5781 6151 78446 370 chain 13777 chrX 155270560 + 36671808 36672014 L1PA8A 6298 - 7 208 145346 94 7 6 36 11 7 58 chain 19168 chrX 155270560 + 36673220 36673433 L1P1 4361 - 832 1044 129621 26 1 0 186 chain 25393 chrX 155270560 + 36674127 36674629 L1MA3 4352 - 133 609 102721 39 1 0 67 155 129 84 0 1 156 chain 73486 chrX 155270560 + 36680112 36680993 MER11D 897 + 0 897 46792 119 8 5 5 0 3 285 8 0 157 0 23 186 0 1 113 chain 28232 chrX 155270560 + 36694768 36695123 THE1A 353 - 0 353 92184 155 1 0 88 1 0 110 chain 5985 chrX 155270560 + 36695128 36695203 THE1A-int 1579 - 5 81 185388 12 0 1 63 chain 12980 chrX 155270560 + 36705608 36705818 L1PB2 3958 - 120 325 148312 62 2 1 26 11 8 56 5 4 48 chain 14749 chrX 155270560 + 36708373 36708575 THE1D 372 + 0 193 142107 56 16 7 130 chain 144540 chrX 155270560 + 36714044 36715822 L1PA8A 6298 - 37 1829 25393 56 0 1 138 0 1 391 5 6 168 12 11 75 0 1 519 0 1 68 1 0 257 1 0 72 0 12 15 chain 15856 chrX 155270560 + 36715822 36716022 L1P3 4156 + 3834 4035 138076 150 0 1 50 chain 534151 chrX 155270560 + 36718282 36724398 L1PA4 6152 - 11 6142 3691 1254 1 2 1708 1 0 1069 1 4 153 0 1 447 0 12 51 1 0 22 5 0 9 1 6 1393 chain 94238 chrX 155270560 + 36731362 36732435 MER11C 1089 - 16 1089 38282 1073 chain 46155 chrX 155270560 + 36755237 36755794 MLT2A2 560 + 0 560 61891 35 1 2 46 0 1 119 0 1 356 chain 36808 chrX 155270560 + 36759518 36760157 L1PA14 3548 - 95 738 73790 38 1 0 13 11 31 29 5 1 9 1 0 39 1 0 72 1 0 48 1 2 34 1 0 6 31 18 108 2 0 5 2 0 14 1 13 18 29 26 119 chain 9009 chrX 155270560 + 36770315 36770430 MSTB 430 + 300 415 165543 115 chain 5481 chrX 155270560 + 36808951 36809012 L1PA2 6032 + 5970 6031 190209 61 chain 8988 chrX 155270560 + 36844150 36844264 L1PB4 2604 + 2407 2531 165669 74 0 10 40 chain 16774 chrX 155270560 + 36847963 36848321 L1PB1 5432 - 10 329 136187 4 1 0 14 4 3 8 1 0 23 1 0 24 2 0 14 1 0 5 3 1 18 25 12 16 1 0 43 1 0 16 2 1 52 2 0 9 18 13 8 1 0 18 3 0 6 3 0 11 chain 9725 chrX 155270560 + 36865095 36865202 L1P2 5180 - 3245 3352 161960 107 chain 12302 chrX 155270560 + 36921968 36922116 THE1B 368 + 209 357 151008 148 chain 115114 chrX 155270560 + 36922127 36923632 THE1B-int 1605 + 0 1600 32752 98 52 25 183 1 2 122 0 25 683 0 4 208 0 92 158 chain 19165 chrX 155270560 + 36923637 36923985 THE1B 368 + 0 368 129631 17 4 0 22 16 31 12 8 31 36 22 19 6 0 2 68 15 0 56 0 2 66 chain 171021 chrX 155270560 + 36932577 36934484 L1PA4 6152 + 4237 6146 21941 897 0 1 10 0 1 833 1 0 4 0 1 162 chain 4180 chrX 155270560 + 36969629 36969687 LTR23-int 503 - 42 99 204831 43 3 2 12 chain 15287 chrX 155270560 + 36970154 36970360 MER57B1 401 + 0 207 140520 93 9 10 104 chain 30373 chrX 155270560 + 36973129 36973524 MER57B1 401 + 0 401 83732 13 0 3 226 5 6 118 0 2 33 chain 130398 chrX 155270560 + 37015939 37018323 MER61-int 3695 + 1873 3695 27987 69 3 5 152 14 15 24 1 0 286 0 1 114 2 0 76 3 0 23 0 1 126 1 0 62 73 71 254 569 5 177 0 1 12 0 1 128 0 5 78 0 4 41 3 4 25 17 11 51 chain 21320 chrX 155270560 + 37017234 37017534 MER61-int 3695 + 3157 3456 122802 150 2 1 45 0 1 48 1 0 54 chain 7704 chrX 155270560 + 37017697 37017778 MER61-int 3695 + 3071 3152 172914 81 chain 73718 chrX 155270560 + 37046299 37047260 L1PA8 5853 - 0 963 46665 89 8 7 16 2 1 52 2 1 8 2 1 69 2 0 45 1 0 466 0 3 9 0 2 52 0 1 22 1 4 115 chain 57473 chrX 155270560 + 37047260 37047952 L1PA8 5853 + 4209 4902 54123 456 0 1 236 chain 32177 chrX 155270560 + 37048517 37048970 LTR2 463 + 0 463 80566 61 0 3 42 10 17 237 27 28 19 1 0 56 chain 3084 chrX 155270560 + 37058635 37058668 MER58A 224 + 50 83 223263 33 chain 22930 chrX 155270560 + 37088378 37088650 AluY 311 + 38 311 115962 94 0 1 178 chain 7431 chrX 155270560 + 37151078 37151379 MER70A 477 + 167 475 174570 31 134 139 14 0 1 34 46 47 42 chain 76168 chrX 155270560 + 37156448 37157329 MER11D 897 - 0 897 45383 287 2 25 80 1 3 218 9 0 284 chain 222039 chrX 155270560 + 37158183 37160964 L1P2 5180 - 2511 5178 17755 342 13 0 147 2 0 333 0 1 481 97 4 567 2 1 6 1 0 224 1 0 48 1 0 35 2 3 228 3 2 47 1 0 49 2 1 11 2 1 136 chain 22217 chrX 155270560 + 37163410 37163923 L1PREC2 3366 - 323 809 119278 33 13 16 23 37 20 29 2 0 12 15 10 12 29 21 13 3 0 5 1 0 43 6 5 43 4 13 34 13 7 107 18 22 18 chain 292080 chrX 155270560 + 37163947 37167243 L1PA5 6144 - 5 3314 13896 169 0 7 652 10 17 636 1 0 783 0 1 716 1 0 328 chain 23889 chrX 155270560 + 37168615 37168931 L1PA7 6471 - 1 317 110963 145 28 28 143 chain 33093 chrX 155270560 + 37224341 37224729 LTR3 431 - 0 404 79063 86 0 1 85 0 1 44 5 19 168 chain 19200 chrX 155270560 + 37228908 37229207 THE1B 368 + 0 304 129526 167 4 3 28 0 3 8 38 40 18 0 1 36 chain 6710 chrX 155270560 + 37231256 37231345 L1MA8 2339 - 562 652 179608 22 0 1 67 chain 25278 chrX 155270560 + 37255592 37255945 THE1B 368 + 0 368 103327 44 0 15 49 1 0 58 7 6 22 7 5 107 0 4 58 chain 509202 chrX 155270560 + 37257293 37262892 L1PA3long 6157 + 552 6157 6228 151 1 0 4 0 1 34 1 0 2386 2 1 1786 0 3 386 0 4 516 0 1 332 chain 8513 chrX 155270560 + 37272780 37272992 L1MC1 2226 - 519 735 168225 33 76 77 67 4 7 32 chain 3925 chrX 155270560 + 37280938 37280980 MER4E1 777 + 663 705 208493 42 chain 23766 chrX 155270560 + 37282236 37282727 Tigger3 1187 + 359 738 111676 178 100 0 22 7 0 14 1 0 27 1 0 22 2 1 41 5 2 13 1 17 8 15 0 34 chain 28230 chrX 155270560 + 37287080 37287431 THE1A 353 - 0 353 92193 31 1 0 17 0 2 8 0 2 183 1 0 110 chain 23949 chrX 155270560 + 37289036 37289352 THE1A 353 - 31 353 110627 77 0 1 134 1 0 25 6 7 40 0 5 33 chain 171486 chrX 155270560 + 37317682 37320112 HERVH-int 3825 - 1179 3825 21887 544 8 12 284 40 25 171 57 56 123 9 0 184 43 13 47 0 1 4 1 0 5 5 6 393 1 0 22 80 348 74 2 1 333 chain 6032 chrX 155270560 + 37324317 37324388 LTR56 451 + 13 84 184955 71 chain 4007 chrX 155270560 + 37327295 37327339 tRNA-Met 55 + 0 44 207286 44 chain 13831 chrX 155270560 + 37332703 37332902 LTR56 451 + 120 325 145124 15 0 1 24 12 17 148 chain 35166 chrX 155270560 + 37337594 37338069 LTR10F 562 + 0 562 75958 75 0 1 31 1 85 21 16 19 22 6 1 42 0 1 112 0 1 93 0 1 39 0 1 17 chain 208414 chrX 155270560 + 37340502 37343501 HERVIP10FH-int 2884 + 148 2876 18613 60 4 0 86 0 2 101 12 6 284 0 5 516 2 0 140 0 4 28 4 1 7 3 0 11 1 0 7 1 0 19 2 1 43 5 0 115 1 0 4 8 5 20 4 1 13 45 25 14 28 3 43 22 10 39 10 0 3 1 0 15 5 4 67 0 15 185 0 1 199 1 0 26 1 0 16 4 6 341 1 0 66 1 0 39 12 11 17 1 0 8 15 9 35 205 23 8 2 0 16 2 0 5 chain 44679 chrX 155270560 + 37343560 37344090 LTR10F 562 + 0 562 63398 200 0 31 273 0 1 57 chain 16021 chrX 155270560 + 37353828 37354190 THE1B 368 - 0 366 138305 12 1 0 102 133 134 6 0 3 59 4 5 45 chain 21937 chrX 155270560 + 37365644 37365909 AluSp 311 + 11 277 120471 26 1 2 238 chain 329664 chrX 155270560 + 37386040 37390168 L1P3 4156 - 17 4153 12215 24 2 1 7 2 0 109 5 1 426 0 4 936 0 2 102 0 1 169 0 8 252 3 4 1175 0 3 201 42 40 91 4 5 167 3 2 85 51 50 13 13 12 180 1 0 5 0 1 60 chain 74729 chrX 155270560 + 37403449 37404295 L1PA5 6144 + 5276 6128 46149 18 1 0 695 1 8 131 chain 21877 chrX 155270560 + 37411284 37411589 AluSg7 307 + 9 299 120726 123 17 13 134 7 0 14 4 0 6 chain 117371 chrX 155270560 + 37413033 37415213 MER61-int 3695 - 0 1822 32007 51 534 188 54 1 0 48 0 1 45 2 1 150 12 5 254 73 71 62 1 0 126 0 1 23 3 0 82 2 0 112 0 1 282 1 0 24 14 15 152 0 2 72 chain 35664 chrX 155270560 + 37419766 37420199 L1P1 4361 + 1 434 75000 433 chain 285597 chrX 155270560 + 37420199 37423380 L1PA5 6144 + 2963 6144 14313 3181 chain 6606 chrX 155270560 + 37439844 37439953 L1MA7 2200 - 110 208 180409 37 13 2 59 chain 536327 chrX 155270560 + 37441040 37447187 L1PA5 6144 - 4 6141 3405 335 1 0 541 33 0 2006 0 14 43 0 8 292 0 1 1494 9 0 9 0 9 323 0 1 1061 chain 555223 chrX 155270560 + 37487702 37493839 L1PA3long 6157 - 0 6151 801 1522 1 0 1945 1 0 1234 5 1 149 0 29 535 1 0 471 8 0 265 chain 99805 chrX 155270560 + 37507649 37508818 L1PA8A 6298 + 5115 6291 36826 374 1 4 9 0 1 16 0 1 48 0 2 721 chain 2860 chrX 155270560 + 37508935 37508967 MER5A1 166 - 131 163 227672 32 chain 49966 chrX 155270560 + 37509993 37510573 L1PA5 6144 - 0 589 59046 111 0 9 469 chain 22419 chrX 155270560 + 37510859 37511110 L1PA5 6144 - 3 254 118381 251 chain 25543 chrX 155270560 + 37541344 37541616 AluYa5 310 - 0 272 102034 272 chain 24958 chrX 155270560 + 37564430 37564718 AluY 311 + 14 296 105013 112 6 0 170 chain 134895 chrX 155270560 + 37565890 37567494 SVA_D 2077 - 3 2061 27033 376 0 2 207 1 0 4 0 1 34 0 1 4 0 1 18 0 49 20 0 1 9 0 2 30 0 1 28 18 106 20 4 273 127 3 0 32 0 3 75 0 40 594 chain 48620 chrX 155270560 + 37607148 37608048 L1P3 4156 + 3317 3897 60016 70 322 0 90 0 3 14 1 0 403 chain 3963 chrX 155270560 + 37612062 37612122 L1MA4 2864 + 2479 2539 207930 18 3 2 21 0 1 18 chain 547194 chrX 155270560 + 37627864 37634007 L1PA4 6152 + 1 6143 1807 630 0 1 2541 1 0 2128 1 0 842 chain 10156 chrX 155270560 + 37667357 37667489 MLT1A1 405 - 0 130 159823 73 1 0 53 1 0 4 chain 24755 chrX 155270560 + 37673539 37673830 AluSp 311 - 20 311 106141 291 chain 35616 chrX 155270560 + 37680857 37681311 L1PA8 5853 + 5392 5853 75391 172 1 0 45 2 0 73 1 0 5 0 13 40 2 1 19 3 2 91 chain 22370 chrX 155270560 + 37690766 37691018 L1PA7 6471 + 6218 6470 118628 252 chain 45659 chrX 155270560 + 37707718 37708735 MER51A 677 - 0 677 62344 64 1 0 78 9 10 102 0 30 11 0 5 46 2 1 10 0 1 119 10 0 21 38 3 87 334 4 85 chain 22265 chrX 155270560 + 37712399 37712670 AluY 311 + 4 275 119053 271 chain 24765 chrX 155270560 + 37715289 37715579 AluSp 311 + 4 293 106079 121 1 0 168 chain 40466 chrX 155270560 + 37719962 37720462 LTR19A 502 + 0 502 68646 6 0 2 47 0 1 248 1 0 198 chain 9346 chrX 155270560 + 37729361 37729468 U6 107 + 0 107 163816 107 chain 55942 chrX 155270560 + 37729468 37730088 L1PA5 6144 + 5520 6144 55159 166 0 4 454 chain 50111 chrX 155270560 + 37742767 37743709 MER41-int 2638 - 67 1264 58936 36 1 0 73 3 1 10 26 273 82 55 64 4 0 1 10 4 5 40 19 0 51 12 10 9 2 0 8 4 21 21 0 1 5 2 0 19 25 19 62 3 35 41 1 0 15 9 10 22 16 0 89 3 0 160 chain 52215 chrX 155270560 + 37749182 37749841 PABL_A 660 + 0 660 57490 222 0 1 45 1 0 10 4 5 303 1 0 4 1 2 68 chain 5254 chrX 155270560 + 37749993 37750057 L1MB8 1703 + 954 1018 192472 64 chain 72063 chrX 155270560 + 37762171 37762955 L1PA4 6152 + 5359 6143 47451 784 chain 17179 chrX 155270560 + 37768624 37768847 MER30 238 + 0 238 135090 108 3 18 112 chain 31560 chrX 155270560 + 37784874 37785450 L1PB1 5432 - 5 538 81544 5 2 0 18 1 0 13 1 0 22 1 0 21 2 0 17 1 0 4 3 1 18 23 12 13 5 4 42 1 0 16 2 1 50 18 12 12 5 4 4 1 0 24 1 0 9 5 2 149 11 4 56 chain 3163 chrX 155270560 + 37789770 37789850 MLT1J 494 + 317 401 221694 31 29 33 20 chain 22244 chrX 155270560 + 37806503 37806868 THE1D 372 + 0 372 119151 62 0 3 5 11 8 82 30 36 10 17 18 148 chain 47049 chrX 155270560 + 37818465 37819033 LTR22 571 - 3 571 61167 296 22 22 250 chain 65025 chrX 155270560 + 37821329 37822057 L1PA5 6144 - 1 729 50562 258 1 0 73 0 1 396 chain 4744 chrX 155270560 + 37822176 37822232 MSTD 398 - 342 398 197976 56 chain 61793 chrX 155270560 + 37831819 37832578 MER4E 760 - 0 760 51998 328 1 0 66 1 3 201 1 0 137 0 1 24 chain 24498 chrX 155270560 + 37839067 37839348 L1PA5 6144 - 1 288 107551 143 0 4 120 0 2 18 chain 36643 chrX 155270560 + 37845469 37845890 LTR2 463 - 42 463 74035 421 chain 10051 chrX 155270560 + 37845916 37846123 HERVE_a-int 7009 - 18 213 160319 25 32 24 15 4 2 34 2 0 24 1 0 13 3 1 6 1 0 31 0 4 16 chain 130483 chrX 155270560 + 37861132 37862599 L1PA4 6152 - 13 1479 27968 535 1 2 302 1 0 122 1 0 505 chain 35247 chrX 155270560 + 37862599 37862992 L1PA4 6152 + 4259 4653 75532 385 0 1 8 chain 36299 chrX 155270560 + 37863005 37863588 L1MA2 4263 - 407 983 74505 41 25 22 126 6 5 56 36 34 5 2 0 119 4 5 110 1 0 4 0 1 48 chain 16645 chrX 155270560 + 37863601 37863829 L1MA2 4263 + 3832 4058 136537 124 11 9 93 chain 3015 chrX 155270560 + 37865456 37865493 MIR 256 + 189 226 224721 37 chain 44849 chrX 155270560 + 37873711 37874301 MER4A1_ 611 - 7 611 63233 6 1 0 268 12 26 93 0 1 55 4 3 29 0 1 122 chain 48516 chrX 155270560 + 37876827 37877516 PABL_A 660 - 3 660 60093 4 1 0 56 13 9 6 0 6 17 14 23 33 43 2 163 1 0 338 chain 5292 chrX 155270560 + 37883877 37883944 MIR 256 + 79 149 192091 59 0 3 8 chain 43309 chrX 155270560 + 37885657 37886194 MER41A 554 - 0 554 65031 356 0 12 16 0 4 69 1 2 95 chain 121445 chrX 155270560 + 37886203 37888209 MER41-int 2638 - 2 1814 30553 534 1 0 8 13 2 110 39 23 102 3 0 50 313 8 129 1 0 189 0 1 157 1 0 256 57 200 43 chain 18898 chrX 155270560 + 37894647 37894859 AluY 311 + 85 298 130373 47 0 1 165 chain 24910 chrX 155270560 + 37905506 37905865 THE1B 368 - 0 368 105281 115 45 55 29 1 0 169 chain 116534 chrX 155270560 + 37905876 37907696 THE1B-int 1605 - 11 1578 32273 194 0 1 155 4 0 228 0 1 318 27 36 75 0 1 92 0 16 10 10 35 160 305 0 91 0 3 151 chain 21018 chrX 155270560 + 37907725 37908081 THE1B 368 - 2 368 123852 55 8 0 68 34 42 8 0 2 22 1 0 19 6 9 31 9 15 95 chain 3613 chrX 155270560 + 37911458 37911509 MLT1D 503 - 8 56 213440 41 3 0 7 chain 33308 chrX 155270560 + 37964482 37964931 MER4A1 472 - 0 472 78720 10 0 1 4 1 0 209 1 22 115 0 1 4 1 0 90 0 2 14 chain 7303 chrX 155270560 + 38007280 38007400 L1PB1 5432 - 10 121 175420 17 3 1 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 16 chain 6729 chrX 155270560 + 38044213 38044304 MER3 215 + 125 215 179472 5 1 0 85 chain 5503 chrX 155270560 + 38058221 38058297 MADE1 96 + 2 96 190012 29 0 9 12 0 9 35 chain 12326 chrX 155270560 + 38086402 38086603 L1PA8 5853 + 5640 5834 150907 35 30 25 40 2 1 19 2 1 73 chain 157750 chrX 155270560 + 38110217 38112252 L1PA8 5853 - 0 2067 23625 93 1 0 19 2 1 33 0 8 11 1 0 9 10 9 62 5 3 41 6 5 235 0 9 50 13 10 243 4 8 125 0 1 294 4 3 87 0 22 132 1 0 254 0 3 10 4 0 217 0 1 69 chain 6899 chrX 155270560 + 38118010 38118171 MER20 218 - 65 210 178200 18 9 14 30 10 0 11 4 0 50 18 11 11 chain 23755 chrX 155270560 + 38131574 38131860 AluSp 311 + 10 297 111741 203 8 9 75 chain 15523 chrX 155270560 + 38174096 38174300 L1MA2 4263 + 3842 4044 139816 114 11 9 79 chain 10614 chrX 155270560 + 38235885 38236060 L1M1 2793 + 2509 2686 157754 96 24 27 39 3 2 13 chain 3718 chrX 155270560 + 38237720 38237775 L1M1 2793 + 2632 2686 211658 39 3 2 13 chain 24741 chrX 155270560 + 38250368 38250646 L1PA4 6152 + 5862 6140 106219 278 chain 17309 chrX 155270560 + 38277817 38278179 THE1B 368 + 0 368 134762 80 1 2 20 35 36 37 61 65 37 0 1 28 7 6 56 chain 10952 chrX 155270560 + 38278983 38279171 L1MA7 2200 + 1871 2040 156392 78 2 0 28 38 21 42 chain 14447 chrX 155270560 + 38285328 38285540 MER30 238 - 5 235 143055 40 0 3 36 22 41 6 4 0 104 chain 7420 chrX 155270560 + 38285554 38285726 MER5A 189 - 2 176 174649 73 67 69 32 chain 11553 chrX 155270560 + 38322049 38322178 L1PA4 6152 + 6022 6151 154089 129 chain 23141 chrX 155270560 + 38336283 38336744 L1PB1 5432 - 5 439 114931 5 2 0 18 1 0 10 5 4 20 1 0 26 3 1 12 1 0 4 2 0 19 24 13 15 2 1 41 2 1 14 8 7 48 2 0 6 10 6 10 6 5 6 1 0 16 0 3 15 1 3 105 chain 3329 chrX 155270560 + 38350664 38350710 MER20 218 + 176 218 218419 13 4 0 29 chain 85807 chrX 155270560 + 38356275 38357823 L1PB1 5432 + 4240 5422 41228 388 3 0 75 0 2 212 0 4 179 46 14 20 1 0 13 1 0 9 2 0 3 2 0 8 2 0 53 3 2 14 1 0 44 1 0 16 3 0 6 332 17 8 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 45596 chrX 155270560 + 38368309 38369026 L1PA15 4387 + 3649 4356 62407 164 1 2 4 0 1 70 2 0 16 3 2 24 1 0 85 0 2 85 2 1 11 5 10 4 1 0 54 2 1 13 8 0 6 0 4 9 1 0 50 7 4 18 0 3 22 3 1 15 5 0 26 chain 52735 chrX 155270560 + 38371432 38372242 Tigger3b 1229 - 379 1206 57167 79 3 1 59 8 0 15 0 9 16 20 28 11 6 9 46 5 7 23 0 1 160 0 3 120 7 9 81 6 7 16 4 8 48 6 0 71 chain 173953 chrX 155270560 + 38380554 38395283 L1PA3long 6157 - 0 3074 21597 845 12527 872 1357 chain 43675 chrX 155270560 + 38381400 38381889 L1PA3long 6157 + 4806 5295 64598 489 chain 49572 chrX 155270560 + 38384845 38385615 L1PB1 5432 - 10 749 59345 4 1 0 14 1 0 13 1 0 21 1 0 24 61 45 19 1 0 45 1 0 18 1 0 44 9 7 9 5 1 14 1 0 6 1 0 24 3 0 5 3 6 290 0 1 101 1 0 28 chain 7580 chrX 155270560 + 38385615 38385708 L1PB1 5432 + 4543 4637 173667 85 0 1 8 chain 40474 chrX 155270560 + 38387518 38387978 L1PA5 6144 - 611 1071 68630 460 chain 53219 chrX 155270560 + 38387978 38388584 L1PA5 6144 + 5538 6142 56876 229 0 1 361 3 0 13 chain 7697 chrX 155270560 + 38390319 38390405 L1PA8 5853 + 5767 5853 172951 86 chain 156912 chrX 155270560 + 38395283 38396998 L1PA3long 6157 + 4439 6153 23722 202 1 0 1512 chain 2800 chrX 155270560 + 38399960 38400003 MER110A 451 + 8 82 228731 26 1 32 16 chain 10348 chrX 155270560 + 38400651 38400866 MER6A 605 - 9 193 158914 36 26 29 4 1 0 4 0 1 30 34 0 80 chain 13043 chrX 155270560 + 38400868 38401026 L1PA6 6164 + 5999 6158 148066 19 0 1 139 chain 107386 chrX 155270560 + 38409047 38410437 L1MA3 4352 - 260 1662 34867 86 5 13 424 0 1 194 0 2 645 5 6 31 chain 28896 chrX 155270560 + 38436751 38437065 L1PA4 6152 + 5825 6140 89465 123 0 1 191 chain 23821 chrX 155270560 + 38440513 38440855 THE1B 368 - 20 368 111356 36 7 6 66 2 1 24 0 5 10 1 0 24 0 1 6 1 0 65 1 0 70 0 5 29 chain 5373 chrX 155270560 + 38461230 38461302 MLT1H2 457 - 332 402 191283 56 2 0 14 chain 72650 chrX 155270560 + 38463127 38463916 L1PA3long 6157 - 0 792 47195 658 0 3 131 chain 148286 chrX 155270560 + 38463917 38465523 L1PA3long 6157 + 3749 5355 24848 1606 chain 5310 chrX 155270560 + 38467468 38467528 U7 62 + 1 61 191914 60 chain 15009 chrX 155270560 + 38475716 38475908 MER107 203 + 0 203 141295 50 0 1 5 0 1 56 1 0 36 0 4 20 0 6 24 chain 2766 chrX 155270560 + 38502064 38502103 MIR 256 + 117 159 229226 23 1 0 7 0 4 8 chain 12535 chrX 155270560 + 38513023 38513157 L1PA5 6144 - 3 137 150099 134 chain 16712 chrX 155270560 + 38522462 38522794 L1PB1 5432 + 5122 5422 136365 16 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 2 1 16 1 0 27 2 1 16 1 0 20 23 11 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 13204 chrX 155270560 + 38566273 38566459 MER30 238 - 0 199 147449 49 3 0 57 8 24 69 chain 22441 chrX 155270560 + 38571453 38571751 L1PA8 5853 + 5560 5853 118288 48 2 0 48 0 1 22 1 0 10 1 0 55 2 1 15 1 0 93 chain 76240 chrX 155270560 + 38573570 38574424 L1PA5 6144 - 14 869 45341 158 1 2 695 chain 52763 chrX 155270560 + 38578467 38579170 LTR17 781 - 86 781 57156 368 1 0 72 21 19 10 2 0 47 1 0 24 1 0 99 1 0 56 chain 18919 chrX 155270560 + 38579170 38579433 AluSq4 311 + 38 302 130318 85 13 3 24 5 18 114 2 0 20 chain 33968 chrX 155270560 + 38583829 38584203 L1PA4 6152 + 5777 6152 77661 114 0 1 260 chain 3120 chrX 155270560 + 38585334 38585367 MER61A 341 + 308 341 222554 33 chain 269129 chrX 155270560 + 38586118 38590025 MER61-int 3695 + 0 3695 15226 28 6 4 6 2 0 8 2 0 58 10 11 156 2 1 139 15 1 84 311 0 51 1 2 29 5 8 52 0 96 111 13 18 18 13 12 137 1 0 4 0 1 191 0 3 434 3 0 522 1 6 232 1 2 16 4 2 322 1 0 84 21 20 26 0 1 7 9 1 241 0 1 4 11 8 192 1 2 7 0 16 187 0 4 45 0 1 83 chain 29964 chrX 155270560 + 38603637 38604051 L1PA16 3655 + 3171 3576 84925 7 6 0 24 1 0 78 12 10 286 chain 13112 chrX 155270560 + 38605037 38605202 MLT2A1 477 - 92 261 147801 11 0 5 46 1 0 107 chain 90981 chrX 155270560 + 38605208 38606274 HERVL-int 5654 - 1562 2641 39300 223 0 1 124 6 17 19 0 1 694 chain 30712 chrX 155270560 + 38617986 38618361 THE1C 375 + 0 375 83016 181 0 1 167 1 0 26 chain 22225 chrX 155270560 + 38624000 38624243 L1PA3long 6157 - 0 243 119239 243 chain 11680 chrX 155270560 + 38626208 38626386 MER30 238 + 36 238 153559 57 0 3 11 13 31 14 0 6 35 3 0 45 chain 33814 chrX 155270560 + 38640438 38640910 Tigger3b 1229 - 0 489 77919 240 0 10 31 2 0 67 1 13 92 5 3 4 1 0 29 chain 25822 chrX 155270560 + 38659828 38660132 AluSc 308 + 0 303 100780 10 1 0 293 chain 132211 chrX 155270560 + 38685199 38686712 L1PA6 6164 - 15 1528 27585 1513 chain 91382 chrX 155270560 + 38748281 38749370 L1PA8A 6298 + 5194 6291 39168 289 2 1 5 0 7 72 0 2 721 chain 197083 chrX 155270560 + 38768711 38770885 L1PA4 6152 + 3960 6134 19420 1341 2 1 699 0 1 132 chain 64807 chrX 155270560 + 38804220 38805899 L1PB1 5432 - 5 1002 50655 5 2 0 18 1 0 13 1 0 18 7 6 23 2 0 13 1 0 4 2 0 19 19 7 21 1 0 5 566 0 39 1 0 15 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 98 11 191 15 14 273 1 2 116 4 3 44 1 6 24 chain 29695 chrX 155270560 + 38818822 38819296 MER4D1 891 - 388 874 85850 73 1 0 16 1 0 10 1 0 5 5 6 70 0 2 56 11 39 105 19 4 64 1 2 5 1 0 20 1 0 9 chain 36733 chrX 155270560 + 38889480 38889959 LTR12D 1347 - 0 451 73908 261 7 6 31 1 0 27 27 0 13 0 1 112 chain 28932 chrX 155270560 + 38927749 38928107 L1PA6 6164 - 2 359 89311 6 2 0 152 1 2 197 chain 15629 chrX 155270560 + 38928542 38929219 LTR12D 1347 - 347 751 139498 16 0 1 60 252 172 45 207 13 97 chain 3983 chrX 155270560 + 38928660 38928720 LTR12D 1347 - 265 324 207646 30 4 3 26 chain 3762 chrX 155270560 + 38928917 38928958 LTR12D 1347 - 571 612 210932 41 chain 5974 chrX 155270560 + 38928992 38929065 LTR12D 1347 - 837 907 185478 26 3 0 44 chain 3780 chrX 155270560 + 38929072 38929122 LTR12D 1347 - 686 845 186936 17 0 109 33 chain 4683 chrX 155270560 + 38929647 38929724 MADE1 96 - 1 94 198714 47 11 27 19 chain 9250 chrX 155270560 + 38929733 38929873 MER4B 649 - 186 331 164306 38 11 1 68 0 15 23 chain 518840 chrX 155270560 + 38947762 38954808 L1PA7 6471 + 0 6463 5288 147 0 2 254 0 1 1747 328 7 101 0 2 275 5 31 39 4 0 22 34 17 120 8 0 83 0 5 174 58 0 110 0 26 366 2 1 18 4 8 229 12 59 157 11 9 275 312 0 240 0 4 1091 3 2 87 0 1 197 4 14 340 0 10 41 0 2 125 1 2 22 chain 7867 chrX 155270560 + 38958591 38958686 MER2 342 - 103 198 171884 95 chain 39473 chrX 155270560 + 38960393 38960972 L1PA13 3608 - 120 686 70056 22 1 0 18 2 0 4 2 0 41 9 7 12 1 0 44 5 4 60 9 7 105 7 6 26 1 0 210 chain 3249 chrX 155270560 + 38963174 38963216 L1MD2 1676 + 115 157 220022 42 chain 12642 chrX 155270560 + 38979231 38979439 L1MA5 2750 + 2455 2661 149668 27 4 5 77 14 13 53 3 2 16 1 0 13 chain 94343 chrX 155270560 + 38989424 38990460 L1PA3long 6157 - 0 1051 38250 1025 0 15 11 chain 3135 chrX 155270560 + 39016239 39016274 MER5C 305 - 172 207 222255 35 chain 541140 chrX 155270560 + 39039625 39045752 L1PA5 6144 - 1 6141 2640 141 0 1 686 1 2 441 0 2 202 5 6 1159 0 1 344 1 0 1263 0 5 98 0 2 1297 5 6 484 chain 4131 chrX 155270560 + 39053553 39053602 LTR16A 446 - 364 413 205486 49 chain 59230 chrX 155270560 + 39057827 39058474 L1PA3long 6157 + 5513 6157 53262 629 3 0 15 chain 21928 chrX 155270560 + 39071449 39071779 THE1C 375 + 46 375 120510 69 19 16 52 22 25 141 1 0 26 chain 2869 chrX 155270560 + 39078582 39078640 MLT1E 632 - 548 621 227543 25 15 30 18 chain 18393 chrX 155270560 + 39130120 39130347 L1PA15 4387 + 2639 2865 131816 205 1 0 21 chain 523166 chrX 155270560 + 39130369 39140417 L1PA7 6471 - 12 6471 4853 210 0 1 368 21 1 154 0 13 5 1 2 76 0 5 326 0 1 349 0 1 55 9 0 10 1 2 208 0 4 120 2 0 5 0 2 294 0 1 176 0 1 65 3 0 151 10 57 251 1 0 22 2 0 891 2 0 531 3638 2 148 0 4 72 1 2 114 0 1 1144 27 28 181 1 2 403 chain 113325 chrX 155270560 + 39134688 39136093 LTR12C 1709 + 0 1709 33272 338 0 43 83 4 0 1 1 0 6 1 0 179 0 278 184 1 0 4 4 2 106 11 4 399 1 0 82 chain 171258 chrX 155270560 + 39136108 39138268 SVA_D 2077 + 0 2066 21906 769 0 40 107 50 1 25 85 0 5 4 0 87 1 2 6 0 1 140 48 0 51 48 0 69 0 98 665 chain 2968 chrX 155270560 + 39136985 39137034 SVA_D 2077 + 1054 1104 75387 38 0 1 11 chain 3029 chrX 155270560 + 39137059 39137109 SVA_D 2077 + 1129 1179 75387 50 chain 2614 chrX 155270560 + 39137109 39137144 SVA_D 2077 + 1306 1341 81494 35 chain 2908 chrX 155270560 + 39137387 39137435 SVA_D 2077 + 1310 1359 75387 30 0 1 18 chain 2908 chrX 155270560 + 39137486 39137534 SVA_D 2077 + 1410 1459 75387 33 1 2 14 chain 96350 chrX 155270560 + 39140420 39141963 L1PA15 4387 + 2845 4365 37719 323 2 0 167 9 11 300 29 33 134 2 0 16 14 9 53 3 1 40 1 0 29 7 6 27 15 13 97 1 0 22 0 4 17 22 22 15 10 9 15 70 62 42 30 23 21 1 0 9 chain 24913 chrX 155270560 + 39161256 39161579 MSTA-int 1630 + 30 353 105260 13 0 1 4 1 0 305 chain 30845 chrX 155270560 + 39175602 39175963 L1PA6 6164 + 5796 6162 82776 35 0 1 317 0 4 9 chain 15001 chrX 155270560 + 39182753 39183143 L1MA6 2487 + 2069 2394 141316 28 4 5 127 176 109 35 0 1 20 chain 395429 chrX 155270560 + 39204562 39210032 L1PB1 5432 + 56 5417 10259 106 60 61 163 16 13 8 8 0 349 0 1 356 9 8 21 8 9 111 10 8 125 1 0 3 29 0 13 11 7 279 6 8 5 2 0 620 1 0 101 1 2 58 6 1 30 2 3 311 2 0 6 1 0 640 8 0 244 5 6 675 0 1 4 1 0 113 1 2 90 7 4 93 2 0 39 8 0 49 13 4 112 5 6 69 5 4 46 10 10 50 1 2 8 0 1 23 1 0 10 19 14 6 2 0 53 2 1 16 1 0 43 1 0 15 1 0 7 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 276439 chrX 155270560 + 39210251 39214126 L1PB1 5432 - 33 3836 14845 8 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 27 14 13 1 0 62 1 0 51 18 12 12 1 0 6 1 0 24 5 0 6 56 59 52 3 2 159 3 0 30 1 9 166 4 0 182 0 6 149 0 5 225 6 11 67 0 1 16 6 7 180 0 1 54 2 0 5 10 11 160 16 13 196 0 15 152 1 0 168 0 1 164 2 0 60 68 39 250 0 1 471 6 10 262 51 7 146 chain 2487 chrX 155270560 + 39247967 39248353 MLT1G1 539 + 0 398 233256 23 315 329 12 10 9 18 1 0 7 chain 21415 chrX 155270560 + 39281709 39282086 MSTA 426 - 27 426 122459 82 1 21 47 10 1 12 3 0 7 30 31 39 17 25 21 7 12 101 chain 119711 chrX 155270560 + 39294286 39295816 THE1A-int 1579 - 0 1579 31142 110 0 2 229 0 1 250 8 0 209 8 50 225 2 1 60 0 2 372 0 11 57 chain 28668 chrX 155270560 + 39295816 39296170 THE1A 353 - 0 353 90458 242 1 0 111 chain 2780 chrX 155270560 + 39301081 39301199 LTR16E1 515 - 65 182 229021 22 74 73 22 chain 31035 chrX 155270560 + 39303928 39304287 L1PA5 6144 + 5768 6127 82460 359 chain 16962 chrX 155270560 + 39320052 39320375 MSTB 430 + 26 410 135693 70 13 71 24 41 43 40 12 10 42 1 4 68 0 1 4 1 0 7 chain 4027 chrX 155270560 + 39356062 39356115 LTR16C 481 - 0 52 206972 17 1 0 35 chain 3410 chrX 155270560 + 39372228 39372268 MER5B 177 + 65 105 216926 40 chain 362986 chrX 155270560 + 39403389 39407827 L1PA6 6164 + 1728 6162 11293 62 6 4 6 0 2 410 0 2 117 7 10 64 5 1 380 7 11 587 19 1 317 12 13 256 0 2 242 0 2 1098 0 5 90 1 4 742 4 0 6 chain 96544 chrX 155270560 + 39407835 39408970 L1PA7 6471 + 5320 6457 37679 302 10 13 71 1 0 751 chain 5078 chrX 155270560 + 39432293 39432393 L1MA8 2339 + 2165 2257 194311 21 11 0 6 1 6 36 3 1 22 chain 25849 chrX 155270560 + 39446984 39447376 MSTA 426 + 2 407 100659 26 2 0 75 0 1 6 1 5 14 2 0 15 17 21 135 10 18 89 chain 125496 chrX 155270560 + 39479828 39481391 THE1B-int 1605 - 0 1605 29243 28 0 2 868 2 14 234 1 27 392 0 2 38 chain 19623 chrX 155270560 + 39491464 39491824 MLT1A1 405 - 0 335 128327 73 1 0 57 0 1 46 1 26 15 0 10 9 58 8 36 25 15 39 chain 68808 chrX 155270560 + 39494623 39495383 L1PA4 6152 + 5378 6141 48889 6 0 1 406 0 1 211 0 1 137 chain 7852 chrX 155270560 + 39502751 39502864 MER3 215 - 88 202 171980 16 7 8 90 chain 30004 chrX 155270560 + 39509563 39509941 THE1C 375 + 0 375 84795 12 6 3 129 0 1 203 1 0 27 chain 22494 chrX 155270560 + 39518248 39518533 AluSp 311 + 0 282 118051 11 2 0 167 8 7 97 chain 4585 chrX 155270560 + 39529266 39529388 LTR16E1 515 - 22 175 199806 55 53 84 14 chain 33356 chrX 155270560 + 39543882 39544314 MER57A1 433 + 0 433 78641 280 3 4 149 chain 58173 chrX 155270560 + 39554336 39555060 Tigger1 2417 - 208 936 53888 374 2 1 7 0 3 158 0 2 183 chain 11641 chrX 155270560 + 39558961 39559103 MSTA 426 - 284 426 153733 142 chain 29881 chrX 155270560 + 39574571 39574883 AluYb8 318 - 6 318 85160 312 chain 25703 chrX 155270560 + 39611566 39611857 AluYh9 303 + 9 300 101275 291 chain 5203 chrX 155270560 + 39656960 39657021 MER45C 884 + 765 826 193000 61 chain 11411 chrX 155270560 + 39690945 39691131 MER2B 336 - 0 170 154636 23 2 1 21 17 1 14 2 3 107 chain 9009 chrX 155270560 + 39705604 39705735 MER20 218 - 62 182 165544 66 17 6 48 chain 8364 chrX 155270560 + 39708685 39708782 MSTB 430 + 0 97 169049 97 chain 22617 chrX 155270560 + 39727600 39727919 MLT1B 390 - 40 358 117500 120 0 13 7 18 5 151 1 0 22 chain 26250 chrX 155270560 + 39729859 39730169 AluY 311 + 4 309 99019 128 0 1 140 6 0 36 chain 11017 chrX 155270560 + 39744420 39744601 MER51A 677 - 261 456 156138 52 0 1 17 20 0 57 7 40 28 chain 22393 chrX 155270560 + 39798522 39798795 AluSg 306 + 13 286 118519 273 chain 3065 chrX 155270560 + 39831169 39831201 LTR67B 553 - 444 476 223670 32 chain 23625 chrX 155270560 + 39846671 39846963 AluY 311 + 0 294 112434 46 1 7 73 4 0 168 chain 28762 chrX 155270560 + 39848785 39849162 THE1C 375 + 0 375 90057 184 1 0 5 10 9 177 chain 12626 chrX 155270560 + 39959840 39959981 AluSp 311 + 170 311 149743 141 chain 110708 chrX 155270560 + 40069777 40071064 SVA_B 1603 - 0 1603 34027 540 0 281 117 0 37 558 14 1 16 1 10 13 7 9 21 chain 24750 chrX 155270560 + 40088776 40089060 AluSc 308 - 10 294 106172 284 chain 4160 chrX 155270560 + 40101919 40101985 MLT1B 390 - 225 288 205095 18 1 0 9 0 1 4 1 0 21 2 0 10 chain 3110 chrX 155270560 + 40107658 40107714 LTR16A1 462 + 408 462 222754 16 10 8 30 chain 5704 chrX 155270560 + 40137868 40137932 MLT1A0 366 + 274 338 188076 64 chain 36667 chrX 155270560 + 40140044 40140519 MER41A 554 + 80 554 74004 12 0 1 58 0 1 243 19 16 143 chain 4150 chrX 155270560 + 40145080 40145132 MLT1G1 539 + 225 278 205246 41 0 1 11 chain 23779 chrX 155270560 + 40147037 40147424 THE1D 372 - 0 372 111599 148 1 0 24 32 34 80 10 12 16 20 2 56 chain 3102 chrX 155270560 + 40191134 40191174 MLT2D 439 + 395 439 222896 34 0 4 6 chain 31140 chrX 155270560 + 40197089 40197492 L1PA8 5853 + 5450 5847 82272 53 0 1 60 1 0 45 2 0 69 2 1 14 1 0 47 2 1 19 1 0 87 chain 6384 chrX 155270560 + 40204124 40204198 MLT1D 503 - 145 219 182149 74 chain 40466 chrX 155270560 + 40206072 40206757 L1PB1 5432 + 4797 5427 68643 282 9 6 18 1 2 9 15 0 20 1 0 13 1 0 9 6 2 10 7 5 47 2 1 15 1 0 44 1 0 16 1 0 4 3 0 8 9 0 17 17 10 13 3 1 21 1 0 21 1 0 13 1 0 15 1 0 4 1 0 4 chain 4602 chrX 155270560 + 40209228 40209285 L1M4c 1769 - 50 107 199591 57 chain 13187 chrX 155270560 + 40212886 40213173 L1PA16 3655 - 36 351 147520 16 40 19 6 3 0 19 46 100 33 1 0 10 1 0 112 chain 11755 chrX 155270560 + 40220485 40220681 MER2 342 + 132 342 153239 52 2 0 31 1 17 62 4 5 15 7 6 22 chain 88576 chrX 155270560 + 40223597 40224921 L1PA16 3655 - 36 1337 40159 15 60 44 246 25 23 86 9 8 109 8 0 43 6 7 121 12 10 4 1 0 52 4 6 170 1 0 211 10 11 62 1 5 68 chain 23833 chrX 155270560 + 40225563 40225967 MSTA 426 - 18 426 111292 90 10 18 55 15 14 13 10 13 11 0 1 34 25 19 7 1 0 133 chain 3151 chrX 155270560 + 40271369 40271407 LTR16C 481 + 443 481 221915 38 chain 3806 chrX 155270560 + 40288039 40288100 MLT1F2 592 + 2 74 210301 33 3 14 25 chain 26164 chrX 155270560 + 40289608 40289963 THE1A 353 + 0 353 99350 106 15 14 82 13 12 139 chain 128924 chrX 155270560 + 40289963 40291539 THE1A-int 1579 + 0 1579 28327 338 0 6 135 25 19 53 0 1 71 1 0 161 0 1 73 15 16 448 0 1 256 chain 12109 chrX 155270560 + 40291541 40291705 THE1A 353 + 2 202 151765 107 5 41 20 0 1 4 1 0 27 chain 12863 chrX 155270560 + 40291706 40291857 THE1A 353 + 202 353 148785 151 chain 38426 chrX 155270560 + 40298008 40298521 LTR10D 510 - 0 510 71544 248 3 0 26 7 1 13 6 12 109 12 0 15 6 18 68 chain 4509 chrX 155270560 + 40310398 40310463 L1MA4 2864 - 55 118 200682 43 2 0 20 chain 3657 chrX 155270560 + 40313409 40313464 MADE1 96 - 0 96 212617 17 2 43 36 chain 4784 chrX 155270560 + 40341210 40341260 MER44C 733 - 22 72 197531 50 chain 23608 chrX 155270560 + 40341998 40342325 THE1A 353 - 24 353 112534 87 31 33 209 chain 6966 chrX 155270560 + 40352108 40352189 HY3 101 + 16 97 177702 81 chain 3006 chrX 155270560 + 40355089 40355125 MLT1H1 527 + 384 419 224938 6 1 0 29 chain 3190 chrX 155270560 + 40356540 40356586 MLT1D 503 + 305 353 221102 22 1 3 23 chain 26639 chrX 155270560 + 40358622 40358903 AluYa5 310 + 27 308 97515 281 chain 26708 chrX 155270560 + 40391799 40392550 L1PB2 3958 + 3408 3838 97291 31 2 0 13 12 8 49 9 1 30 3 0 6 2 1 18 0 6 5 6 0 40 2 1 25 303 1 36 1 0 70 0 2 24 2 1 62 chain 3400 chrX 155270560 + 40402710 40402778 Arthur1B 1073 + 894 959 217077 15 19 16 34 chain 5134 chrX 155270560 + 40417567 40417654 MADE1 96 - 1 96 193740 34 3 19 34 8 0 8 chain 22055 chrX 155270560 + 40463520 40463849 THE1D 372 - 22 372 120001 104 2 8 9 6 0 21 8 6 13 2 20 8 0 1 26 1 5 129 chain 27709 chrX 155270560 + 40505198 40505497 AluYd8 298 - 0 298 94009 184 1 0 114 chain 10178 chrX 155270560 + 40511569 40511732 MER3 215 + 0 195 159727 46 9 36 74 1 7 21 1 0 11 chain 22857 chrX 155270560 + 40532848 40533115 AluSp 311 + 32 299 116297 267 chain 23841 chrX 155270560 + 40607528 40607886 THE1B 368 + 0 368 111240 168 5 4 28 9 14 14 7 15 43 1 0 20 7 6 56 chain 9829 chrX 155270560 + 40620018 40620163 THE1D 372 - 215 370 161457 73 4 0 8 9 23 51 chain 31422 chrX 155270560 + 40624633 40625006 THE1C 375 - 0 373 81779 26 1 0 330 0 1 16 chain 56514 chrX 155270560 + 40629096 40629716 L1PA3long 6157 + 5535 6157 54843 193 0 2 427 chain 11393 chrX 155270560 + 40629876 40630162 L1MB8 1703 + 1399 1626 154729 4 0 1 21 13 10 70 22 21 62 71 15 23 chain 4722 chrX 155270560 + 40635319 40635379 MER6B 211 + 0 60 198260 60 chain 24503 chrX 155270560 + 40641032 40641363 THE1B 368 + 0 368 107530 139 0 4 13 7 38 16 0 4 16 1 0 10 1 0 128 chain 8286 chrX 155270560 + 40649484 40649586 LTR40b 463 - 0 102 169481 102 chain 17564 chrX 155270560 + 40650868 40651173 HUERS-P2-int 2744 - 2 288 134087 28 2 0 9 13 9 7 1 0 34 3 0 35 12 11 8 1 0 3 1 0 7 1 0 9 2 1 37 4 0 88 chain 414838 chrX 155270560 + 40654084 40660141 L1PB1 5432 + 59 5430 9675 182 0 1 161 1 0 8 10 11 122 1 0 690 1 2 159 1 0 7 18 12 58 0 2 67 336 0 55 0 6 12 1 0 560 4 1 12 0 1 303 3 1 6 3 0 342 18 2 7 0 1 169 298 0 545 7 10 6 3 0 148 1 4 110 2 12 239 0 3 454 1 0 71 0 1 481 1 0 13 7 0 22 1 0 9 16 11 11 3 1 47 11 4 11 6 5 44 1 0 15 3 0 17 9 0 14 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 30427 chrX 155270560 + 40671684 40672098 MER51B 395 - 0 395 83640 324 33 14 57 chain 30377 chrX 155270560 + 40676652 40677064 MER51B 395 - 3 395 83710 254 0 1 27 2 0 39 19 0 71 chain 90791 chrX 155270560 + 40678307 40679532 HSMAR1 1287 + 0 1256 39360 105 15 20 94 4 14 30 0 3 127 5 8 36 1 0 112 4 8 43 0 3 73 0 1 232 26 29 318 chain 48272 chrX 155270560 + 40682379 40682951 LTR10C 591 + 0 589 60265 439 0 15 49 5 7 79 chain 24004 chrX 155270560 + 40692585 40692882 AluSz 310 + 5 302 110309 232 2 0 38 0 2 25 chain 12086 chrX 155270560 + 40698492 40698730 L1MB3 1562 - 13 219 151849 25 1 0 85 59 29 59 1 0 8 chain 43702 chrX 155270560 + 40705382 40705919 MER41A 554 - 0 541 64565 142 0 4 30 1 0 21 0 1 343 chain 14590 chrX 155270560 + 40711428 40711602 LTR26B 539 - 338 512 142630 174 chain 21426 chrX 155270560 + 40718056 40718340 AluSp 311 - 15 300 122420 110 0 9 35 20 9 5 0 3 114 chain 54310 chrX 155270560 + 40718352 40719151 L1MA2 4263 - 179 1500 56154 28 7 0 41 0 16 34 34 30 126 3 0 73 14 530 46 1 0 27 0 3 220 1 3 131 0 1 7 1 0 5 chain 4890 chrX 155270560 + 40721231 40721370 SVA_F 1814 + 635 1063 196376 25 34 157 26 11 128 16 1 50 26 chain 109343 chrX 155270560 + 40721566 40722923 SVA_A 1864 + 402 1864 34358 58 49 5 28 0 40 44 0 2 66 0 37 83 0 2 111 0 73 12 1 4 8 0 1 122 2 0 36 3 0 10 1 0 26 3 0 694 chain 2763 chrX 155270560 + 40721624 40721660 SVA_A 1864 + 536 572 59588 36 chain 25730 chrX 155270560 + 40730190 40730586 L1PA16 3655 - 36 401 101164 16 5 0 7 19 0 18 3 0 288 23 19 17 chain 29751 chrX 155270560 + 40743097 40743516 MLT2A1 477 - 0 460 85648 32 13 53 7 6 0 180 1 2 23 0 1 9 4 1 70 1 2 47 0 7 26 chain 8960 chrX 155270560 + 40763390 40763500 L1MB3 1562 + 788 898 165828 110 chain 3880 chrX 155270560 + 40770309 40770356 MSTB 430 - 383 430 209162 47 chain 16453 chrX 155270560 + 40773343 40773560 MER30 238 + 0 230 137055 106 5 21 72 3 0 31 chain 14096 chrX 155270560 + 40781396 40781619 L1MB1 2102 + 1182 1386 144233 74 36 15 101 0 2 12 chain 83517 chrX 155270560 + 40785131 40786526 Tigger3b 1229 + 0 1228 42112 103 33 40 37 3 4 100 0 7 28 0 3 239 0 2 33 1 2 13 5 9 14 0 1 59 213 13 62 3 0 223 1 11 225 chain 21037 chrX 155270560 + 40789970 40790211 AluY 311 + 52 293 123774 79 0 2 149 2 0 11 chain 12738 chrX 155270560 + 40801013 40801267 MER2 342 - 64 328 149296 49 2 3 91 77 86 35 chain 27686 chrX 155270560 + 40808659 40809072 MSTA 426 - 0 426 94091 45 0 1 62 10 18 48 15 14 32 1 0 47 10 16 143 chain 119628 chrX 155270560 + 40809072 40810693 MSTA-int 1630 - 0 1630 31168 113 6 5 31 5 6 151 3 10 369 5 6 202 19 20 172 2 1 117 10 11 244 0 1 30 6 5 136 chain 6344 chrX 155270560 + 40810725 40810802 MSTA 426 - 31 108 182430 77 chain 21701 chrX 155270560 + 40810812 40811100 MSTA 426 - 126 419 121379 54 9 8 32 1 0 6 0 1 40 0 6 146 chain 25981 chrX 155270560 + 40813959 40814261 AluSp 311 + 0 298 100087 120 4 0 178 chain 5010 chrX 155270560 + 40817857 40817922 MLT1C 463 - 3 68 195025 65 chain 31448 chrX 155270560 + 40818756 40819189 MER51A 677 + 0 661 81735 132 0 9 29 4 230 179 13 6 76 chain 10197 chrX 155270560 + 40820990 40821118 MER85 139 + 1 139 159631 92 0 11 6 1 0 29 chain 25740 chrX 155270560 + 40827314 40827693 THE1C 375 - 0 375 101119 26 6 2 161 2 1 94 14 0 8 6 20 40 0 1 22 chain 29160 chrX 155270560 + 40828567 40828928 MER51A 677 - 271 677 88255 186 0 44 32 0 1 143 chain 44216 chrX 155270560 + 40831946 40832547 MER41A 554 + 0 554 63927 131 6 7 315 10 6 11 45 1 83 chain 37824 chrX 155270560 + 40835658 40836337 L1PB1 5432 - 5 613 72375 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 24 12 15 1 0 45 1 0 15 10 9 45 2 0 8 5 1 12 1 0 12 79 40 128 1 0 127 0 1 19 chain 3107 chrX 155270560 + 40836990 40837028 L1MB7 1623 - 132 169 222785 12 1 0 25 chain 50744 chrX 155270560 + 40849652 40850291 MSTA-int 1630 - 7 647 58469 72 0 1 35 1 0 173 5 6 353 chain 27451 chrX 155270560 + 40852024 40852338 AluYk4 311 - 4 311 94813 265 7 0 42 chain 20796 chrX 155270560 + 40872345 40872605 AluSc 308 - 42 302 124615 76 18 19 40 1 0 125 chain 5638 chrX 155270560 + 40883662 40883751 LTR41 747 + 10 100 188678 34 9 10 46 chain 40719 chrX 155270560 + 40892429 40893091 MER51A 677 - 18 677 68279 46 1 0 55 0 22 8 40 38 14 12 25 54 7 0 35 6 7 100 1 0 22 0 1 33 10 0 23 17 0 24 1 0 10 2 1 141 chain 32669 chrX 155270560 + 40894321 40894712 L1PA7 6471 + 6075 6468 79734 228 0 1 4 1 2 158 chain 45658 chrX 155270560 + 40900299 40901092 L1MA4 2864 + 1452 2075 62346 106 175 0 149 6 19 4 0 1 281 8 0 33 1 0 30 chain 25797 chrX 155270560 + 40908496 40908790 AluYc3 301 + 0 287 100889 113 7 0 174 chain 3841 chrX 155270560 + 40930081 40930316 MLT1J1 437 - 328 405 209773 4 0 1 11 169 0 12 1 0 14 0 11 24 chain 20005 chrX 155270560 + 40952652 40952883 AluSp 311 - 67 299 127129 159 0 1 72 chain 3598 chrX 155270560 + 40954313 40954370 Tigger4a 237 - 181 237 213693 25 6 5 26 chain 10368 chrX 155270560 + 40961019 40961212 L1MB8 1703 + 1349 1529 158836 14 7 0 31 0 11 17 4 3 4 1 0 59 1 0 33 14 0 8 chain 21433 chrX 155270560 + 40983420 40983711 AluSx4 309 + 4 293 122395 119 19 18 63 0 1 75 2 0 13 chain 10473 chrX 155270560 + 40992991 40993202 L1MA2 4263 - 151 355 158373 7 1 0 29 2 1 17 7 0 34 26 30 29 2 1 6 1 0 50 chain 7654 chrX 155270560 + 41033248 41033355 Tigger3a 397 + 158 268 173200 18 0 4 47 6 5 36 chain 13899 chrX 155270560 + 41054784 41055036 MER1B 344 - 0 252 144921 57 18 20 47 4 0 16 33 35 77 chain 78356 chrX 155270560 + 41070820 41071728 SVA_D 2077 + 730 2076 44344 38 2 82 21 1 83 38 0 51 13 0 127 120 0 98 675 chain 17021 chrX 155270560 + 41072568 41072795 MER47A 366 + 79 331 135535 73 2 28 73 1 0 78 chain 8196 chrX 155270560 + 41073639 41073737 L1PA6 6164 + 6066 6162 169972 88 2 0 8 chain 5194 chrX 155270560 + 41120012 41120080 MER21A 919 - 513 586 193109 4 0 1 34 0 4 30 chain 11392 chrX 155270560 + 41121145 41121295 MER65C 458 - 295 448 154737 81 5 8 64 chain 23900 chrX 155270560 + 41127827 41128166 THE1B 368 + 0 368 110910 44 5 39 81 5 4 20 9 6 99 1 0 75 chain 24486 chrX 155270560 + 41128803 41129108 AluSp 311 - 8 311 107622 90 6 7 78 1 0 3 2 0 125 chain 26283 chrX 155270560 + 41138492 41138784 AluSp 311 - 4 296 98889 292 chain 7807 chrX 155270560 + 41152050 41152140 5S 121 + 0 90 172264 90 chain 19986 chrX 155270560 + 41152863 41153105 AluY 311 + 36 295 127183 8 0 1 51 0 16 183 chain 42815 chrX 155270560 + 41154380 41155375 LTR66 600 - 0 594 65633 104 1 17 25 0 17 26 144 9 126 0 4 99 303 0 167 chain 10433 chrX 155270560 + 41175496 41175618 AluJo 314 + 151 273 158554 122 chain 8344 chrX 155270560 + 41175740 41175840 HY3 101 + 0 100 169149 100 chain 5423 chrX 155270560 + 41186523 41186590 MLT2D 439 - 366 432 190776 57 1 0 9 chain 25333 chrX 155270560 + 41240299 41240591 AluSp 311 - 19 311 103052 292 chain 12028 chrX 155270560 + 41243884 41244017 SVA_B 1603 + 1470 1603 152085 133 chain 43798 chrX 155270560 + 41249340 41250530 MER41A 554 + 0 554 64455 90 0 1 41 324 0 36 10 0 175 0 2 136 305 0 73 chain 25483 chrX 155270560 + 41270118 41270410 AluSp 311 - 19 311 102302 292 chain 7882 chrX 155270560 + 41270591 41270699 LTR8 732 - 599 701 171792 91 6 0 11 chain 22451 chrX 155270560 + 41275921 41276216 AluSq 315 + 4 301 118242 41 14 13 75 0 2 86 0 1 79 chain 11950 chrX 155270560 + 41282872 41283011 Tigger2 2703 + 2384 2523 152409 139 chain 181804 chrX 155270560 + 41285946 41287929 L1PA3long 6157 - 0 1983 20806 140 7 0 13 0 7 1823 chain 18611 chrX 155270560 + 41294754 41294983 L1PA8A 6298 - 14 247 131188 214 0 4 15 chain 9124 chrX 155270560 + 41316112 41316278 MLT1A0 366 + 0 159 164952 19 41 34 106 chain 50365 chrX 155270560 + 41320288 41321402 L1PB1 5432 - 5 765 58742 5 2 0 18 1 0 13 1 0 21 1 0 24 27 22 16 24 12 15 1 0 45 1 0 11 9 8 49 2 0 9 6 2 11 1 0 8 1 0 22 29 13 88 0 2 295 309 0 11 0 2 38 chain 49630 chrX 155270560 + 41330189 41332435 PABL_A 660 - 0 660 59294 71 12 11 82 316 0 56 0 2 196 0 4 146 1282 7 85 chain 22496 chrX 155270560 + 41342146 41342494 THE1C 375 - 28 375 118044 115 18 19 23 1 0 6 1 2 43 13 14 11 0 1 105 4 0 8 chain 3553 chrX 155270560 + 41345957 41345996 MADE1 96 - 57 96 214493 39 chain 33209 chrX 155270560 + 41346840 41347268 MER4A1 472 + 0 472 78866 14 0 2 206 5 26 86 3 22 97 0 2 17 chain 6846 chrX 155270560 + 41355200 41355317 L1PB4 2604 - 130 246 178618 67 6 7 22 10 8 12 chain 23370 chrX 155270560 + 41392920 41393210 AluSp 311 - 20 311 113813 84 10 11 196 chain 314561 chrX 155270560 + 41423905 41427497 L1PA6 6164 + 2568 6160 12826 622 0 1 31 1 0 398 0 1 222 0 1 805 2 0 1511 chain 19757 chrX 155270560 + 41443663 41443981 MER1B 344 - 5 306 127937 57 41 23 145 12 13 63 chain 16842 chrX 155270560 + 41460150 41460493 L1MB3 1562 + 1238 1549 136011 113 11 10 9 2 0 51 1 0 4 60 33 26 17 17 22 1 0 26 chain 166580 chrX 155270560 + 41470975 41472900 SVA_D 2077 + 58 2077 22450 472 1 0 34 0 40 120 0 3 21 16 13 156 2 0 26 45 5 86 2 4 11 1 0 4 0 1 39 2 0 219 0 98 649 1 0 18 chain 3658 chrX 155270560 + 41471823 41471868 SVA_D 2077 + 1257 1302 63309 45 chain 355559 chrX 155270560 + 41501002 41509638 L1PA5 6144 - 3 4136 11460 62 1 0 785 1 0 520 22 0 94 4 0 52 0 1 925 4479 0 20 2 0 179 0 1 255 0 4 67 1 0 84 1 0 29 2 0 273 0 2 86 5 7 381 2 1 294 0 1 10 chain 79028 chrX 155270560 + 41504491 41505846 HERVK11-int 2540 + 911 2189 44043 52 30 22 16 59 43 16 7 5 65 1 0 23 1 0 5 121 96 36 21 1 419 25 20 105 1 0 183 13 12 72 6 9 78 chain 24422 chrX 155270560 + 41539890 41540180 AluSp 311 + 1 294 107954 66 0 3 224 chain 4195 chrX 155270560 + 41542111 41542164 Tigger2 2703 + 1269 1323 204624 44 0 1 9 chain 23434 chrX 155270560 + 41567124 41567391 AluSc5 308 + 34 301 113457 267 chain 24851 chrX 155270560 + 41577943 41578422 LTR35A 463 - 0 463 105623 116 4 0 15 13 11 7 1 0 27 46 57 21 2 0 32 10 8 39 13 11 35 14 4 17 1 0 48 3 0 15 chain 50863 chrX 155270560 + 41578752 41579338 LTR10C 591 - 1 591 58392 80 0 2 249 0 2 257 chain 177712 chrX 155270560 + 41633337 41635297 L1PA3long 6157 + 4138 6156 21189 224 0 4 83 0 54 41 1 0 532 0 1 1079 chain 12524 chrX 155270560 + 41650451 41650694 L1PB1 5432 - 32 262 150141 8 1 0 22 1 0 24 2 0 14 1 0 5 3 1 10 12 3 17 0 6 10 1 0 39 9 8 12 2 1 50 chain 28723 chrX 155270560 + 41659757 41660064 L1PA3long 6157 - 0 307 90233 307 chain 548004 chrX 155270560 + 41667845 41674004 L1PA5 6144 + 0 6144 1707 290 18 0 1406 0 5 412 6 8 152 0 1 456 6 0 952 1 0 2227 0 2 233 chain 5383 chrX 155270560 + 41697443 41697509 L1MD2 1676 - 681 747 191157 66 chain 11625 chrX 155270560 + 41702140 41702299 L1MB7 1623 - 1451 1606 153793 148 4 0 7 chain 21583 chrX 155270560 + 41705218 41705532 L1MA2 4263 + 3803 4105 121835 6 3 0 147 11 9 93 22 15 32 chain 15054 chrX 155270560 + 41715893 41716066 AluY 311 + 127 300 141157 173 chain 48855 chrX 155270560 + 41747595 41748745 L1PB1 5432 - 58 798 59835 4 1 0 24 2 0 14 1 0 5 39 31 15 1 0 45 2 5 10 2 1 52 18 12 10 1 0 8 1 0 24 247 11 87 0 2 97 157 0 104 0 1 16 1 0 162 chain 13646 chrX 155270560 + 41755954 41756159 L1MA3 4352 - 42 245 145793 21 1 8 23 2 0 22 4 0 123 3 0 6 chain 18501 chrX 155270560 + 41771140 41771348 L1PA7 6471 - 5 213 131491 208 chain 9194 chrX 155270560 + 41771348 41771449 L1PA7 6471 + 6166 6267 164583 101 chain 11366 chrX 155270560 + 41772488 41772611 L1PA4 6152 + 6028 6151 154829 123 chain 5384 chrX 155270560 + 41798417 41798481 AluJr4 308 - 41 105 191153 64 chain 27917 chrX 155270560 + 41813896 41814264 THE1B 368 - 0 368 93290 75 1 0 91 2 0 28 3 2 107 0 1 22 0 5 24 2 0 13 chain 5520 chrX 155270560 + 41824377 41824443 MLT1A 405 + 338 404 189839 66 chain 11742 chrX 155270560 + 41838776 41838925 L1PA8 5853 + 5706 5853 153292 34 2 1 19 1 0 93 chain 8813 chrX 155270560 + 41862593 41863516 L1PA16 3655 + 1834 2757 49022 142 38 41 92 1 0 130 4 3 433 2 1 81 chain 541263 chrX 155270560 + 41863558 41869581 L1PA3long 6157 + 4 6157 2628 117 0 2 30 0 1 622 0 128 145 0 2 4256 1 0 845 2 0 5 chain 1661 chrX 155270560 + 41869597 41869771 L1PA16 3655 + 2777 2950 49022 108 0 1 4 1 0 13 2 1 46 chain 73228 chrX 155270560 + 41869778 41870585 L1PA5 6144 - 3 809 46913 330 1 0 476 chain 53878 chrX 155270560 + 41888930 41889825 L1PB1 5432 - 19 831 56441 9 1 0 13 1 0 22 1 0 23 2 0 20 8 5 13 14 5 7 3 0 17 1 0 42 1 0 16 2 1 46 7 5 11 16 11 9 1 0 24 60 12 281 2 1 18 1 0 97 0 2 73 4 0 29 chain 19284 chrX 155270560 + 41900691 41901058 THE1B 368 + 0 368 129276 63 68 64 49 0 2 7 29 24 4 0 1 18 0 8 66 1 0 62 chain 7031 chrX 155270560 + 41916095 41916184 MLT1B 390 - 2 90 177247 66 1 0 22 chain 26536 chrX 155270560 + 41918335 41918731 MSTA 426 - 0 426 97904 182 5 37 6 2 0 30 20 0 10 10 30 131 chain 146444 chrX 155270560 + 41921492 41923567 L1PA16 3655 - 1577 3641 25098 69 7 11 151 0 2 38 12 18 49 10 13 16 9 0 474 4 5 105 0 1 4 2 1 251 2 0 4 1 0 76 1 0 4 34 27 28 2 1 177 0 2 73 0 1 110 5 1 213 1 0 24 1 0 78 2 0 26 1 0 11 chain 3435 chrX 155270560 + 41924871 41924914 MER33 330 + 240 283 216481 43 chain 45608 chrX 155270560 + 41950180 41950783 MER4-int 2692 - 2093 2691 62396 213 3 2 258 0 5 6 11 7 9 2 0 63 2 0 25 1 0 10 chain 34059 chrX 155270560 + 41954592 41955033 MER4A1 472 - 0 472 77530 109 0 2 238 0 25 21 4 8 69 chain 10542 chrX 155270560 + 41970936 41971070 THE1D 372 - 15 148 158075 18 2 0 61 0 1 53 chain 27486 chrX 155270560 + 41971554 41971883 L1PA7 6471 - 2 332 94695 11 0 2 136 2 1 180 chain 117453 chrX 155270560 + 41972122 41973692 THE1D-int 1627 - 11 1610 31981 22 0 3 14 1 0 49 4 5 45 0 1 122 5 4 268 0 1 21 3 2 242 9 10 99 0 1 23 2 1 12 1 0 40 1 0 137 0 2 42 0 30 152 12 8 222 1 0 21 chain 21074 chrX 155270560 + 41973713 41974046 THE1D 372 - 0 331 123643 32 1 0 146 49 49 43 2 1 60 chain 2913 chrX 155270560 + 41975261 41975298 MER96B 391 - 13 48 226822 15 2 0 20 chain 11740 chrX 155270560 + 41975340 41975618 L1MA4 2864 + 2560 2805 153298 74 4 3 34 3 0 13 81 58 20 10 4 39 chain 11469 chrX 155270560 + 41995184 41995392 Tigger1 2417 + 2204 2416 154433 4 0 1 5 2 0 35 0 2 26 0 2 55 27 11 15 6 23 33 chain 5655 chrX 155270560 + 42015872 42015950 Charlie2b 853 - 63 137 188524 66 4 0 8 chain 221413 chrX 155270560 + 42017388 42020595 L1PA13 3608 - 128 3274 17787 32 8 4 48 2 0 10 7 6 46 1 0 54 8 6 115 1 0 31 1 0 64 1 2 232 0 1 137 0 1 276 2 1 6 0 2 70 0 1 4 5 4 14 8 5 45 27 15 244 0 1 50 25 5 50 7 0 43 0 3 538 19 25 182 2 1 66 1 2 95 10 5 301 8 6 20 27 28 31 1 0 20 1 0 16 2 0 15 2 1 7 1 0 12 1 0 18 6 2 16 2 0 17 1 0 12 1 0 82 chain 85962 chrX 155270560 + 42020595 42021653 MER11B 1079 - 0 1079 41169 29 10 9 181 0 3 84 1 3 436 1 18 316 chain 80170 chrX 155270560 + 42022647 42023823 HERVK11-int 2540 - 305 1484 43520 126 1 5 74 6 5 62 1 0 126 1 0 107 16 11 386 1 5 38 4 5 7 21 0 24 12 1 27 22 11 18 49 96 35 2 0 10 chain 25146 chrX 155270560 + 42027219 42027687 MLT2B2 565 + 11 563 104028 120 3 0 5 12 15 35 5 6 11 18 14 11 0 4 31 14 110 116 49 36 38 chain 109590 chrX 155270560 + 42032251 42033531 L1PA7 6471 - 7 1291 34302 37 0 1 515 8 11 196 0 1 81 3 2 440 chain 9093 chrX 155270560 + 42033531 42033638 U6 107 - 0 107 165102 107 chain 543960 chrX 155270560 + 42061424 42067435 L1PA3long 6157 - 5 6157 2219 1788 0 4 1124 0 4 2164 0 2 15 1 3 139 0 128 628 0 1 152 chain 19787 chrX 155270560 + 42084824 42085050 L1PA4 6152 - 9 235 127854 226 chain 28614 chrX 155270560 + 42090830 42091139 AluYb8 318 - 11 317 90680 181 3 0 125 chain 145035 chrX 155270560 + 42116162 42118680 L1PB1 5432 + 1478 5417 25318 102 0 2 80 0 4 246 0 2 12 4 32 288 0 2 40 3 1 56 0 1 41 0 1764 8 4 0 63 8 7 124 10 11 253 0 1 10 4 1 15 0 1 62 372 17 101 0 10 156 0 3 15 10 9 85 1 0 10 2 1 24 1 0 8 1 0 10 10 6 6 2 0 45 26 24 45 1 0 14 23 12 18 28 23 21 1 0 22 2 1 11 1 0 13 chain 5685 chrX 155270560 + 42120981 42121053 MLT1D 503 + 418 490 188247 72 chain 5686 chrX 155270560 + 42135208 42135295 MLT1C 463 + 63 144 188239 61 9 4 12 1 0 4 chain 146035 chrX 155270560 + 42144303 42145921 SVA_D 2077 - 17 2077 25163 650 1 0 21 0 1 31 1 441 483 0 2 431 chain 25609 chrX 155270560 + 42147603 42147967 THE1D 372 - 0 370 101683 32 2 0 146 1 0 6 11 10 8 0 4 9 0 1 17 14 19 118 chain 3288 chrX 155270560 + 42163109 42163159 L1MB5 1630 + 1277 1330 219214 25 1 4 24 chain 441340 chrX 155270560 + 42165540 42171661 L1PA8A 6298 + 50 6288 9017 6 1 0 10 3 0 5 2 0 7 6 1 12 5 0 7 0 2 19 19 10 20 1 0 8 2 1 12 1 0 7 17 14 13 9 4 13 2 1 7 1 0 5 2 1 8 1 0 14 23 9 39 16 15 10 8 0 78 2 0 18 1 0 6 1 0 5 1 0 69 12 11 272 1 2 295 0 4 13 31 14 15 2 11 342 4 527 296 16 0 154 1 0 39 15 0 69 5 1 184 0 4 121 11 1 472 3 2 39 2 0 5 1 0 19 3 7 273 1 0 180 0 1 191 0 1 645 0 1 771 0 3 55 317 0 46 0 5 433 4 18 137 1 0 103 chain 31713 chrX 155270560 + 42171749 42172152 MER57A1 433 - 26 431 81313 119 1 3 5 1 0 18 0 1 259 chain 46109 chrX 155270560 + 42185008 42185585 L1PREC2 3366 - 798 1376 61936 544 4 5 29 chain 3502 chrX 155270560 + 42186438 42186475 MLT2A1 477 - 0 37 215347 37 chain 56654 chrX 155270560 + 42194590 42195709 L1PA8A 6298 - 8 779 54627 93 21 11 85 11 9 122 332 0 395 33 29 27 chain 536016 chrX 155270560 + 42195709 42203082 L1PA7 6471 - 4 6471 3444 6 4 0 134 0 3 678 6 7 17 2 0 35 0 1 181 2 1 276 0 1 256 1 0 4 1 2 185 0 2 375 1 0 18 0 1 284 0 3 406 908 0 68 1 0 609 2 1 272 8 0 362 5 8 167 0 2 41 0 1 767 4 5 7 1 0 596 0 1 280 0 1 403 chain 36352 chrX 155270560 + 42198609 42199077 L1PA7 6471 - 1990 2468 74426 234 4 5 118 6 17 98 2 0 6 chain 32511 chrX 155270560 + 42199077 42199473 L1PA7 6471 - 2469 2865 80004 396 chain 8046 chrX 155270560 + 42203104 42203218 L1PA8A 6298 - 767 884 170779 42 1 0 13 0 4 58 chain 42654 chrX 155270560 + 42203221 42203733 L1PA8A 6298 + 4862 5375 65837 451 0 2 5 1 0 55 chain 23466 chrX 155270560 + 42212608 42212911 AluSc5 308 + 7 299 113287 204 18 1 61 0 6 20 chain 7547 chrX 155270560 + 42223976 42224176 MER30 238 + 0 238 173890 15 41 59 28 9 0 11 25 51 26 0 3 45 chain 48505 chrX 155270560 + 42230382 42231065 L1MA2 4263 - 150 814 60103 8 1 0 47 7 0 93 2 1 6 1 0 99 0 2 51 3 0 144 1 0 76 8 3 16 2 0 118 chain 314405 chrX 155270560 + 42267535 42271665 L1PA11 4918 - 340 4441 12831 11 2 0 13 1 0 13 15 11 10 8 3 9 4 0 20 1 0 13 2 0 68 17 14 68 1 0 294 0 1 370 1 0 6 5 8 721 1 0 115 0 1 4 1 0 228 5 6 244 0 3 90 3 1 29 0 2 6 41 32 350 4 1 417 3 0 57 0 1 485 1 0 27 0 1 81 0 2 265 chain 31906 chrX 155270560 + 42271665 42272047 L1PA7 6471 - 3 385 80999 9 2 0 116 0 1 205 0 1 50 chain 8370 chrX 155270560 + 42274537 42274644 L1MB8 1703 + 1456 1563 169017 107 chain 550375 chrX 155270560 + 42284112 42290142 L1PA2 6032 - 2 6030 1398 928 0 1 2851 0 1 1210 1 4 336 7 0 443 1 0 183 0 1 70 chain 27066 chrX 155270560 + 42294543 42294898 THE1B 368 + 0 368 96051 40 0 15 51 1 0 66 3 2 4 0 1 5 1 0 184 chain 81591 chrX 155270560 + 42306153 42307052 L1PA3long 6157 - 0 899 42929 899 chain 63964 chrX 155270560 + 42308627 42309563 L1M1 2793 + 1739 2682 51023 118 0 1 141 9 13 32 1 2 58 1 4 124 4 8 30 31 28 133 20 19 178 1 0 40 2 1 13 chain 14849 chrX 155270560 + 42317861 42318077 L1PB2 3958 - 120 335 141783 60 5 4 21 3 1 73 1 0 10 0 3 43 chain 29793 chrX 155270560 + 42327860 42328280 LTR7Y 441 + 0 431 85489 103 9 0 58 63 83 187 chain 141773 chrX 155270560 + 42332658 42334215 SVA_F 1814 - 0 1805 25863 609 0 289 36 1 0 62 40 0 809 chain 17022 chrX 155270560 + 42359116 42359393 MER2 342 + 33 319 135530 35 0 3 9 8 0 17 5 8 28 5 12 63 0 2 85 3 5 19 chain 38090 chrX 155270560 + 42364127 42364732 LTR9B 643 - 0 643 72002 40 17 15 57 0 14 17 13 0 7 6 0 54 21 22 191 0 1 17 32 35 49 0 37 14 3 6 67 chain 523799 chrX 155270560 + 42365980 42372420 L1PA7 6471 + 0 6465 4788 189 0 1 140 3 0 5 4 7 61 6 0 116 2 3 92 0 1 541 2 18 107 1 0 4 7 8 50 0 2 364 0 2 359 0 1 60 1 0 98 2 0 293 7 11 108 13 0 888 1 0 83 1 0 396 2 1 26 0 1 71 6 17 118 4 5 360 1 3 56 0 8 156 1 0 769 0 4 18 1 0 221 3 2 471 1 10 7 11 0 133 chain 3280 chrX 155270560 + 42404809 42404845 L1PA8A 6298 + 6079 6115 219358 36 chain 13718 chrX 155270560 + 42404854 42405012 L1PA8A 6298 + 6133 6291 145547 114 2 0 5 0 2 37 chain 10986 chrX 155270560 + 42408881 42409012 MSTA-int 1630 - 1499 1630 156249 131 chain 298956 chrX 155270560 + 42412104 42415964 L1PA7 6471 - 12 4513 13480 7 0 1 121 19 20 502 278 0 121 6 15 48 0 3 26 0 1 4 1 0 509 0 1 472 0 2 180 0 1 431 0 892 440 0 8 13 0 1 682 chain 129958 chrX 155270560 + 42416121 42418037 L1PREC2 3366 + 878 2799 28096 156 6 5 54 7 8 166 41 43 59 20 19 22 4 0 7 8 12 167 8 0 14 4 0 73 9 10 80 2 0 49 0 2 64 11 12 41 0 1 599 4 9 30 4 16 31 0 1 89 2 0 35 9 6 41 chain 25080 chrX 155270560 + 42424037 42424307 L1PA2 6032 - 1 271 104406 270 chain 549502 chrX 155270560 + 42448941 42455061 L1PA3long 6157 + 4 6157 1517 41 0 18 89 0 1 95 50 57 402 0 1 248 0 4 80 1 0 1352 0 4 1383 2 0 1331 0 1 1046 chain 15113 chrX 155270560 + 42471034 42471380 L1PB1 5432 - 5 318 141003 4 1 0 11 2 1 7 1 0 13 1 0 21 1 0 24 24 19 19 17 6 6 1 0 16 1 0 43 1 0 16 2 1 52 2 0 9 27 21 24 chain 21578 chrX 155270560 + 42506382 42506760 THE1C 375 + 0 374 121853 22 0 1 57 21 11 17 5 7 5 3 0 58 41 48 124 1 0 24 chain 1748 chrX 155270560 + 42506761 42507204 THE1C-int 1605 + 0 445 57933 13 10 12 28 15 6 270 0 8 39 1 2 67 chain 111448 chrX 155270560 + 42508540 42509991 L1PBa1 4058 + 1308 2990 33824 16 0 240 38 11 1 59 4 1 267 1 2 53 2 0 162 0 3 317 9 1 116 4 16 42 2 0 348 chain 537100 chrX 155270560 + 42509993 42516098 L1PA4 6152 + 0 6143 3299 122 8 22 221 0 1 1136 0 21 34 0 1 1619 1 0 778 0 1 1428 0 1 758 chain 102937 chrX 155270560 + 42516691 42518060 L1PB 1623 + 98 1453 36010 4 1 0 10 1 0 5 1 0 52 4 1 18 7 4 77 1 0 128 3 2 19 2 0 68 1 0 255 0 1 413 1 0 4 10 11 9 0 1 125 1 0 56 1 0 37 5 6 42 1 0 7 chain 2242 chrX 155270560 + 42519253 42519821 THE1C-int 1605 + 1031 1602 57933 31 7 10 242 0 1 4 1 0 283 chain 27232 chrX 155270560 + 42519824 42520185 THE1C 375 + 0 369 95488 103 10 19 227 1 0 20 chain 4061 chrX 155270560 + 42541490 42541535 MER39 703 - 613 658 206472 45 chain 19563 chrX 155270560 + 42565996 42566257 AluY 311 + 34 286 128480 92 9 0 13 5 5 142 chain 258637 chrX 155270560 + 42580007 42582944 L1PA5 6144 - 0 2943 15772 11 2 5 134 1 3 4 1 0 160 0 1 2217 0 1 407 chain 19852 chrX 155270560 + 42609157 42609474 L1MA2 4263 + 3806 4114 127647 55 1 0 93 13 11 67 8 11 15 7 0 17 1 0 30 1 0 9 chain 5337 chrX 155270560 + 42609973 42610173 MER2 342 + 143 342 191664 36 120 119 44 chain 23683 chrX 155270560 + 42629793 42630263 LTR19A 502 + 0 502 112138 33 39 38 81 21 58 19 31 30 171 45 42 30 chain 48836 chrX 155270560 + 42630410 42631025 PABL_B 668 - 42 665 59851 348 1 0 33 14 13 197 3 13 19 chain 51237 chrX 155270560 + 42645089 42645724 PABL_B 668 - 28 663 58164 353 12 13 41 1 0 228 chain 24403 chrX 155270560 + 42647602 42647951 THE1A 353 - 0 353 108062 189 3 7 23 17 15 9 0 2 14 1 0 47 0 1 46 chain 259991 chrX 155270560 + 42648292 42652025 MER61-int 3695 - 0 3695 15699 43 6 0 61 2 1 129 0 1 4 1 0 104 1 2 94 0 1 5 6 5 99 1 0 134 0 4 7 10 5 29 42 40 56 14 10 27 11 12 52 0 5 146 6 5 305 0 3 120 0 3 45 1 0 16 4 0 90 7 31 333 0 1 323 1 0 138 1 3 46 1 13 50 2 1 144 8 10 21 0 1 309 4 7 74 11 12 29 1 0 13 0 1 60 21 7 55 3 4 14 3 0 4 4 0 56 1 0 79 39 0 127 0 1 19 8 7 11 14 0 28 chain 502022 chrX 155270560 + 42669995 42676200 L1PA6 6164 - 2 6157 6726 54 0 58 726 0 7 673 0 1 273 0 2 176 0 1 671 0 1 764 2 1 32 0 1 268 0 4 124 1 0 278 6 5 572 15 18 219 0 1 408 0 17 65 21 0 172 53 0 4 23 0 116 19 0 34 1 0 5 16 17 30 34 7 350 chain 7972 chrX 155270560 + 42680441 42680577 LTR49 580 + 0 135 171213 69 26 25 41 chain 51317 chrX 155270560 + 42692787 42693378 LTR10C 591 + 0 591 58095 34 2 0 474 0 2 81 chain 32604 chrX 155270560 + 42720300 42720722 MER57A1 433 + 15 433 79844 276 1 0 9 1 3 4 0 1 45 1 0 4 5 0 76 chain 3013 chrX 155270560 + 42723480 42723515 MER47C 97 - 32 67 224766 35 chain 275274 chrX 155270560 + 42731398 42734516 L1PA4 6152 - 9 3130 14910 126 4 11 15 9 3 462 10 0 796 0 11 829 0 1 867 chain 556778 chrX 155270560 + 42747619 42753620 L1PA2 6032 + 21 6030 636 2169 0 1 324 0 8 1044 1 0 2463 chain 94247 chrX 155270560 + 42767761 42768831 L1PA5 6144 - 1197 2269 38229 776 0 1 63 0 1 231 chain 107062 chrX 155270560 + 42768831 42770025 L1PA5 6144 + 4946 6141 34954 348 0 2 736 1 0 109 chain 28004 chrX 155270560 + 42772100 42772405 AluYa5 310 + 0 303 92987 13 0 1 118 3 0 171 chain 6186 chrX 155270560 + 42810155 42810233 LTR49-int 1717 - 1467 1545 183695 78 chain 3541 chrX 155270560 + 42828077 42828117 MER61E 571 - 172 212 214696 40 chain 10076 chrX 155270560 + 42837015 42837148 LTR23 429 - 5 139 160191 107 6 7 20 chain 31369 chrX 155270560 + 42840177 42840606 MLT2A1 477 + 0 477 81874 169 4 1 20 11 0 74 11 33 88 3 39 43 0 4 6 chain 9112 chrX 155270560 + 42847284 42847408 MER85 139 + 4 139 165003 25 1 2 59 0 10 39 chain 7682 chrX 155270560 + 42851248 42851367 MER34C_ 573 - 6 126 173035 21 13 12 14 0 2 71 chain 26384 chrX 155270560 + 42866333 42866740 LTR7 482 - 5 482 98471 182 1 32 38 0 1 39 57 6 27 9 98 54 chain 7333 chrX 155270560 + 42868119 42868521 MLT1F2 592 - 39 487 175206 34 278 320 12 4 8 74 chain 17031 chrX 155270560 + 42873126 42873484 THE1B 368 + 0 368 135511 111 121 132 63 7 6 56 chain 63945 chrX 155270560 + 42876032 42876774 L1PA8A 6298 - 16 756 51030 424 0 1 284 9 6 25 chain 13080 chrX 155270560 + 42880572 42880745 HSMAR2 1300 - 10 185 147921 89 5 7 79 chain 125449 chrX 155270560 + 42882152 42883717 THE1B-int 1605 - 5 1605 29262 4 0 1 137 0 1 66 1 0 237 0 1 132 1 3 336 0 1 162 1 2 50 10 35 172 0 4 256 chain 25660 chrX 155270560 + 42883717 42884051 THE1B 368 - 0 368 101449 166 2 0 34 1 0 76 0 28 8 0 9 47 chain 76258 chrX 155270560 + 42887287 42888162 MER11D 897 - 0 897 45332 287 3 26 300 1 0 284 chain 86544 chrX 155270560 + 42889840 42890827 L1PA5 6144 + 5149 6137 40956 145 1 0 508 0 1 186 1 2 146 chain 4669 chrX 155270560 + 42929230 42929286 L1M1 2793 + 1668 1724 198875 56 chain 19207 chrX 155270560 + 42932010 42932232 L1PA7 6471 + 6218 6440 129512 222 chain 3495 chrX 155270560 + 42941053 42941093 L1MD 993 + 741 781 215430 40 chain 24882 chrX 155270560 + 42957861 42958224 L1PA8 5853 + 5504 5853 105450 25 0 1 30 1 0 47 2 0 72 1 0 13 13 9 39 2 1 19 1 0 59 5 0 34 chain 31180 chrX 155270560 + 42978181 42978569 MLT2A1 477 - 92 477 82200 215 4 1 169 chain 27099 chrX 155270560 + 43008580 43008944 THE1C 375 - 0 361 95946 255 20 17 89 chain 3465 chrX 155270560 + 43013100 43013136 LTR16A 446 + 35 71 215905 36 chain 41070 chrX 155270560 + 43026302 43026929 Tigger3b 1229 - 65 728 67811 21 0 2 19 1 0 77 5 9 21 0 4 241 13 19 42 0 3 25 10 11 44 3 8 20 2 1 16 0 4 11 6 15 50 chain 8346 chrX 155270560 + 43030993 43031086 L1P1 4361 - 1065 1158 166667 93 chain 112243 chrX 155270560 + 43031086 43032364 L1PA5 6144 + 4864 6144 33603 1022 13 15 243 chain 28617 chrX 155270560 + 43033330 43033705 THE1C 375 - 0 373 90670 25 1 0 57 0 1 105 1 0 6 0 1 55 3 0 97 0 1 25 chain 12949 chrX 155270560 + 43038366 43038570 MER61-int 3695 + 9 198 148437 15 14 0 22 2 0 19 4 5 128 chain 47674 chrX 155270560 + 43038598 43039260 L1PB 1623 - 861 1508 60715 35 6 0 243 2 1 82 1 0 131 2 1 65 0 5 6 13 5 21 4 1 51 chain 22203 chrX 155270560 + 43048213 43048562 THE1D 372 - 0 356 119337 114 0 2 32 59 64 144 chain 331294 chrX 155270560 + 43057652 43062186 L1PA11 4918 - 351 4862 12152 13 1 0 15 13 9 10 21 13 19 2 1 11 3 1 65 22 21 58 3 0 17 0 4 412 6 9 223 1 0 435 0 3 304 10 14 14 1 0 167 4 7 175 34 0 283 0 4 13 4 0 13 10 5 63 0 11 111 17 16 197 0 3 17 0 4 82 0 3 235 0 4 333 0 2 296 6 12 96 4 0 152 0 2 122 6 3 110 2 7 132 1 0 3 2 0 33 1 0 19 2 1 32 2 0 13 1 0 30 2 1 6 2 0 22 chain 11796 chrX 155270560 + 43127572 43127725 L1P4 1494 - 963 1116 153056 153 chain 62149 chrX 155270560 + 43155024 43155746 L1PA7 6471 + 5738 6464 51831 216 0 1 369 0 3 137 chain 28507 chrX 155270560 + 43163323 43163672 L1PA5 6144 - 9 359 91160 329 0 1 20 chain 523834 chrX 155270560 + 43165446 43171039 L1HS 6032 - 0 5591 4783 5 2 0 5586 chain 119988 chrX 155270560 + 43179736 43181522 L1PB1 5432 - 39 1695 31065 23 1 0 24 2 0 9 13 11 15 9 0 17 3 0 13 1 0 45 1 0 17 1 0 47 22 16 12 3 2 8 1 0 20 3 0 15 73 1 46 0 1 245 0 5 169 4 0 9 11 3 108 31 10 765 chain 12017 chrX 155270560 + 43199105 43199266 THE1C 375 - 214 375 152132 9 4 0 14 0 4 134 chain 52158 chrX 155270560 + 43209462 43210050 LTR10C 591 + 0 591 57521 113 0 3 475 chain 73006 chrX 155270560 + 43240736 43241765 L1PBa 3878 + 562 1605 47024 63 1 0 197 1 5 60 0 2 12 9 8 7 0 2 23 0 1 4 5 4 29 7 8 78 0 5 52 1 0 231 1 0 112 6 10 71 0 1 4 0 1 4 8 6 43 chain 34197 chrX 155270560 + 43241814 43242432 L1PB1 5432 + 4886 5422 77353 212 55 5 11 1 0 20 1 0 12 1 0 12 18 12 50 2 1 15 1 0 45 1 0 15 50 35 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 12966 chrX 155270560 + 43247594 43247767 MSTA 426 + 245 426 148367 55 0 5 8 2 5 108 chain 23260 chrX 155270560 + 43253437 43253781 THE1B 368 - 0 368 114387 125 35 45 30 1 0 109 0 15 44 chain 124306 chrX 155270560 + 43253786 43255360 THE1B-int 1605 - 5 1605 29597 36 0 1 5 1 0 530 0 2 282 8 9 144 1 0 120 14 39 15 1 2 152 2 0 263 chain 44632 chrX 155270560 + 43260297 43260810 MER9a1 513 + 0 513 63446 513 chain 43881 chrX 155270560 + 43296447 43297312 L1PA7 6471 + 5929 6470 64356 167 324 0 321 2 1 39 0 1 12 chain 4258 chrX 155270560 + 43298791 43298857 MSTB 430 - 0 69 203765 36 8 11 22 chain 24722 chrX 155270560 + 43299395 43299673 L1PA3long 6157 - 0 275 106318 5 3 0 270 chain 77425 chrX 155270560 + 43299677 43300868 L1PREC2 3366 - 2032 3227 44764 23 60 64 161 8 8 90 0 9 508 2 1 87 6 7 5 1 0 70 22 27 16 2 0 12 1 0 13 1 0 24 15 9 18 6 4 8 1 0 31 chain 19661 chrX 155270560 + 43310405 43310650 LTR10A 586 - 99 345 128217 204 1 2 40 chain 37602 chrX 155270560 + 43312898 43313493 MER34D 576 + 5 575 72682 10 3 0 183 23 28 12 24 0 18 1 3 29 4 0 19 1 0 221 20 20 27 chain 34052 chrX 155270560 + 43320128 43320662 MER34D 576 + 47 576 77541 160 12 15 51 3 4 33 3 2 82 2 0 21 9 0 98 32 35 28 chain 29472 chrX 155270560 + 43331867 43332277 MER51B 395 - 0 395 86746 41 4 0 19 0 4 86 1 0 10 9 8 187 13 0 40 chain 3381 chrX 155270560 + 43352738 43352779 MLT1F2 592 - 47 88 217460 41 chain 6290 chrX 155270560 + 43385929 43386004 MLT1B 390 + 283 358 182882 75 chain 3407 chrX 155270560 + 43393376 43393413 LTR33 499 - 7 44 216960 37 chain 6892 chrX 155270560 + 43396338 43396422 MER34A 573 + 0 84 178255 84 chain 16515 chrX 155270560 + 43405277 43405501 HSMAR2 1300 - 0 225 136877 181 10 11 33 chain 180338 chrX 155270560 + 43433861 43435841 L1PA4 6152 - 0 1977 20963 6 3 0 1971 chain 59068 chrX 155270560 + 43447645 43448275 L1HS 6032 - 249 879 53353 630 chain 23622 chrX 155270560 + 43448275 43448527 L1HS 6032 + 5780 6032 112454 252 chain 37809 chrX 155270560 + 43466086 43467026 L1MA2 4263 - 149 737 72400 10 1 0 35 19 11 92 1 0 9 2 1 147 16 13 13 0 1 120 4 3 62 350 13 10 1 0 48 chain 40347 chrX 155270560 + 43476131 43476648 MER41A 554 - 21 537 68814 107 1 0 253 3 2 81 0 1 72 chain 83403 chrX 155270560 + 43478614 43479717 MER4-int 2692 - 1595 2687 42156 286 4 0 20 0 13 60 17 4 354 0 1 240 0 10 8 36 21 44 2 0 25 1 0 6 chain 15298 chrX 155270560 + 43480930 43481169 LTR8 732 + 0 269 140496 15 0 1 16 0 9 55 0 1 100 29 48 24 chain 25228 chrX 155270560 + 43482362 43482779 LTR7 482 + 0 473 103595 57 2 10 19 0 50 47 45 0 28 1 12 41 10 42 56 1 0 4 0 1 106 chain 36379 chrX 155270560 + 43484602 43485076 MER4A1 472 - 0 472 74387 172 8 5 102 0 1 192 chain 36549 chrX 155270560 + 43494378 43494875 MER84 505 - 10 505 74172 78 1 0 94 2 0 138 19 19 155 0 1 10 chain 16548 chrX 155270560 + 43498994 43499205 MER84 505 - 91 301 136801 91 1 0 119 chain 86183 chrX 155270560 + 43508892 43509855 L1PA4 6152 - 0 966 41084 8 0 1 104 0 1 674 1 2 176 chain 25970 chrX 155270560 + 43513023 43513322 AluSp 311 - 12 311 100136 299 chain 18949 chrX 155270560 + 43526160 43526397 L1PA5 6144 + 5903 6140 130228 92 1 3 4 0 1 128 3 0 9 chain 559281 chrX 155270560 + 43529697 43535837 L1PA3long 6157 - 0 6151 398 318 0 6 2085 0 5 572 7 1 1660 0 6 1498 chain 7095 chrX 155270560 + 43541455 43541540 L1MC3 1789 + 1048 1133 176797 85 chain 499640 chrX 155270560 + 43580937 43587178 L1PA7 6471 - 1 6449 6855 12 1 0 327 1 0 374 0 1 135 1 4 430 0 1 70 2 0 131 1 0 316 0 4 177 0 1 86 0 5 556 3 4 262 0 3 18 0 4 47 1 0 259 4 0 6 8 12 186 0 1 133 0 1 14 5 9 249 2 0 307 1 2 294 1 0 663 1 0 149 0 4 234 0 1 7 0 3 65 15 15 152 5 15 211 11 181 63 88 87 157 chain 22074 chrX 155270560 + 43610277 43610563 L1PA8 5853 - 0 289 119907 93 1 0 19 2 1 45 1 9 7 1 0 71 2 0 44 chain 9605 chrX 155270560 + 43613521 43613770 L1PB1 5432 - 19 244 162574 9 1 0 13 1 0 15 18 17 12 3 1 14 8 5 19 14 5 7 4 0 16 1 0 39 12 11 9 2 1 32 chain 24421 chrX 155270560 + 43623547 43623817 L1PA5 6144 + 5862 6131 107965 169 1 0 100 chain 42193 chrX 155270560 + 43635867 43636334 L1PA4 6152 - 9 477 66402 330 0 1 137 chain 13004 chrX 155270560 + 43636334 43636476 L1PA4 6152 + 5529 5671 148232 142 chain 68901 chrX 155270560 + 43641232 43642075 L1P3 4156 + 3301 4139 48857 193 1 0 40 0 3 7 0 1 118 5 0 444 2 0 7 2 1 24 chain 23278 chrX 155270560 + 43650742 43651016 AluSc8 310 + 20 297 114307 112 0 3 162 chain 60322 chrX 155270560 + 43651544 43652371 L1PA16 3655 + 2698 3534 52670 185 0 4 17 1 0 18 1 0 179 0 11 86 20 19 73 3 1 124 1 0 119 chain 20785 chrX 155270560 + 43661920 43662192 L1PA8 5853 + 5587 5853 124664 21 2 0 70 2 1 15 1 0 46 2 1 19 1 0 93 chain 6840 chrX 155270560 + 43664326 43664557 L1MA8 2339 - 20 220 178651 17 66 45 20 2 0 18 27 21 35 3 0 10 1 2 32 chain 39544 chrX 155270560 + 43699738 43700264 L1P3 4156 + 0 516 69965 251 2 1 71 0 1 85 41 31 76 chain 2963 chrX 155270560 + 43700264 43700302 L1PA7 6471 + 6428 6464 224185 31 2 0 5 chain 30074 chrX 155270560 + 43713502 43713923 L1PA8 5853 + 5437 5853 84584 83 1 2 42 1 0 44 2 0 74 1 0 5 2 1 11 4 5 36 2 1 19 2 1 92 chain 24847 chrX 155270560 + 43729767 43730065 AluY 311 + 8 307 105637 124 0 1 174 chain 10152 chrX 155270560 + 43775645 43775818 Tigger3a 397 - 173 395 159841 85 15 64 21 13 13 39 chain 464969 chrX 155270560 + 43781176 43786754 L1PA7 6471 - 14 5726 8223 603 0 17 216 2 1 641 0 1 600 0 2 26 0 2 123 0 1 23 2 0 198 0 1 160 7 6 115 0 1 190 2 1 28 1 0 279 7 30 490 15 1 68 0 1 116 0 20 236 12 88 292 0 1 109 10 11 361 1 4 103 0 4 542 chain 5750 chrX 155270560 + 43791674 43791875 MLT1D 503 + 0 186 187635 24 1 0 8 114 100 54 chain 29846 chrX 155270560 + 43839453 43839774 AluYb8 318 - 0 318 85296 200 3 0 118 chain 35912 chrX 155270560 + 43842285 43842805 L1PA16 3655 + 3062 3578 74998 106 0 1 5 12 11 19 1 0 24 8 7 55 18 16 272 chain 56717 chrX 155270560 + 43846969 43847619 L1PA5 6144 + 5486 6141 54707 324 0 1 96 0 4 230 chain 67729 chrX 155270560 + 43854478 43855236 L1PA5 6144 - 4 761 49356 662 1 0 95 chain 3206 chrX 155270560 + 43862288 43862324 MLT2B1 522 + 482 518 220849 36 chain 9195 chrX 155270560 + 43904529 43904974 MER41A 554 + 0 447 68189 92 0 1 303 8 9 42 chain 98561 chrX 155270560 + 43905004 43906410 L1PB1 5432 - 12 1381 37135 16 1 0 13 1 0 21 1 0 24 26 23 15 16 6 6 3 0 12 8 7 6 0 1 33 1 0 16 2 1 53 17 11 9 1 0 33 13 11 254 3 0 37 1 0 182 5 0 7 7 9 167 0 1 137 1 0 258 chain 1922 chrX 155270560 + 43906410 43906503 MER41A 554 + 461 554 68189 93 chain 220171 chrX 155270560 + 43910326 43913046 L1PA7 6471 - 232 2974 17871 257 37 22 59 8 0 280 1 0 474 0 1 82 0 1 319 0 5 130 0 2 22 0 3 17 4 5 232 1 34 24 1 2 511 9 0 65 7 18 120 0 4 27 8 1 25 chain 18194 chrX 155270560 + 43913050 43913270 L1PA7 6471 + 6248 6465 132343 211 3 0 6 chain 53407 chrX 155270560 + 43924693 43925306 L1PA6 6164 - 13 625 56755 325 1 0 287 chain 10542 chrX 155270560 + 43926325 43926506 MSTB 430 - 22 217 158070 76 8 14 12 0 5 46 17 18 11 0 2 11 chain 20115 chrX 155270560 + 43933668 43933982 L1PA16 3655 + 3331 3619 126782 99 0 1 148 3 0 9 41 17 14 chain 51556 chrX 155270560 + 43946881 43947469 L1PA5 6144 - 0 587 57919 113 1 0 474 chain 4739 chrX 155270560 + 43951585 43951896 MLT1G 592 + 70 473 198034 28 168 176 27 56 140 32 chain 74749 chrX 155270560 + 43999325 44000144 L1PA4 6152 + 5324 6143 46137 819 chain 25000 chrX 155270560 + 44002017 44002659 MER41B 635 - 312 635 104789 91 320 0 102 1 2 128 chain 24814 chrX 155270560 + 44002120 44002398 L1PA5 6144 - 0 278 105812 278 chain 2793 chrX 155270560 + 44018167 44018404 LTR16A 446 + 59 334 228851 16 148 185 13 31 32 29 chain 97115 chrX 155270560 + 44065280 44067038 L1PA17 2846 + 22 2503 37536 5 1 0 9 1 0 99 0 7 8 1 0 82 35 1044 126 1 0 4 0 1 179 10 11 51 18 19 166 2 0 24 3 1 32 1 0 4 0 1 111 14 7 138 9 22 52 311 0 24 0 13 204 1 0 23 0 5 9 chain 67195 chrX 155270560 + 44075835 44076726 L1MA2 4263 + 3138 4014 49565 112 5 1 77 0 1 237 1 0 17 9 5 74 1 0 82 4 3 55 7 4 150 11 9 49 chain 17662 chrX 155270560 + 44085941 44086147 L1PA7 6471 + 6261 6467 133799 206 chain 545988 chrX 155270560 + 44112080 44118792 L1PA7 6471 + 0 6459 1945 400 5 3 111 0 12 15 4 5 349 0 1 104 0 1 30 21 25 323 1 0 1261 0 1 686 16 0 361 0 9 85 4 0 222 12 0 459 0 8 203 0 4 94 0 3 74 0 1 105 1 0 404 0 1 264 0 7 156 272 0 225 0 2 445 chain 2798 chrX 155270560 + 44139352 44139405 MER5B 177 - 125 177 228758 23 10 9 20 chain 6597 chrX 155270560 + 44151722 44151850 Tigger4 2445 - 85 208 180481 33 22 17 25 0 1 13 4 3 31 chain 37670 chrX 155270560 + 44158393 44158930 MER4B 649 + 0 568 72585 93 1 0 101 0 23 124 0 15 65 35 30 49 1 0 68 chain 10061 chrX 155270560 + 44159594 44159717 MLT1B 390 + 243 369 160269 91 0 3 32 chain 3177 chrX 155270560 + 44176145 44176181 LTR3B_ 500 - 42 78 221397 36 chain 36395 chrX 155270560 + 44176194 44176656 LTR3B_ 500 - 17 484 74370 131 6 10 43 1 0 137 14 15 71 0 1 59 chain 7431 chrX 155270560 + 44176656 44176749 L1MB5 1630 + 831 924 174567 93 chain 3029 chrX 155270560 + 44188006 44188038 MER51A 677 + 201 233 224413 32 chain 24905 chrX 155270560 + 44208227 44208525 AluSc 308 - 10 308 105307 298 chain 6586 chrX 155270560 + 44220627 44220708 L1PA6 6164 - 2 83 180567 81 chain 43674 chrX 155270560 + 44221682 44222176 LTR2C 499 + 0 499 64601 171 1 7 169 1 0 152 chain 25228 chrX 155270560 + 44222224 44222512 L1PA5 6144 + 5855 6144 103598 134 0 1 154 chain 4683 chrX 155270560 + 44227584 44227643 Tigger3b 1229 + 711 770 198727 59 chain 52251 chrX 155270560 + 44234538 44235670 L1P4 1494 - 111 921 57464 33 1 0 134 376 55 12 0 1 52 5 8 187 30 31 80 11 6 85 1 0 4 0 1 121 chain 3158 chrX 155270560 + 44241311 44241347 U6 107 + 1 37 221760 36 chain 8057 chrX 155270560 + 44245155 44245269 MER41B 635 + 509 627 170713 7 0 4 41 1 2 4 1 0 60 chain 3609 chrX 155270560 + 44256198 44256240 Tigger1 2417 - 1643 1685 213499 42 chain 8000 chrX 155270560 + 44260848 44260947 HY3 101 + 0 99 171060 99 chain 64532 chrX 155270560 + 44274256 44275665 L1M1 2793 - 1128 2393 50782 169 3 0 83 2 0 50 0 1 37 0 1 55 7 0 21 4 0 66 0 1 84 0 4 27 0 4 59 1 0 17 1 3 75 18 15 14 6 16 9 0 9 6 1 0 9 2 0 25 1 0 27 24 20 19 4 0 10 39 29 36 147 74 11 1 0 11 1 0 5 3 0 9 2 0 5 171 121 6 1 0 10 3 0 12 chain 134065 chrX 155270560 + 44283286 44284819 L1P2 5180 - 1734 3272 27187 186 0 4 84 0 1 1263 chain 23320 chrX 155270560 + 44286890 44287165 AluSp 311 + 14 289 114091 275 chain 6873 chrX 155270560 + 44293933 44294315 L1PREC2 3366 + 2927 3215 178414 24 37 20 35 6 4 38 167 93 14 39 38 22 chain 25432 chrX 155270560 + 44297433 44297793 THE1B 368 + 7 368 102537 6 2 0 27 0 5 127 21 20 100 2 1 75 chain 9506 chrX 155270560 + 44322677 44322847 L1PA16 3655 + 3164 3337 163041 13 0 1 13 10 14 85 22 20 27 chain 11561 chrX 155270560 + 44328639 44328784 MLT1A0 366 + 0 142 154065 30 3 0 112 chain 34885 chrX 155270560 + 44341080 44341488 L1PA6 6164 - 2 413 76360 28 0 1 304 2 3 19 0 1 55 chain 13062 chrX 155270560 + 44342405 44342563 LTR8 732 - 0 160 147977 81 0 2 77 chain 3010 chrX 155270560 + 44359430 44359601 L1ME1 1623 + 1090 1261 224819 20 121 121 30 chain 22686 chrX 155270560 + 44395279 44395583 AluSg4 309 + 10 299 117140 12 8 0 131 12 5 141 chain 6867 chrX 155270560 + 44402485 44402698 MER31B 477 + 0 182 178444 37 3 0 11 69 74 19 1 0 26 32 0 15 chain 49235 chrX 155270560 + 44404605 44405194 LTR10C 591 - 0 591 59565 81 0 2 508 chain 57290 chrX 155270560 + 44406341 44407351 MER4E1 777 - 0 765 54343 188 268 0 39 0 8 108 0 1 27 10 0 55 1 20 107 0 1 29 0 2 14 0 1 159 0 1 5 chain 20596 chrX 155270560 + 44408429 44409747 LTR8 732 + 31 732 125309 9 5 0 117 1028 415 96 0 1 63 chain 44711 chrX 155270560 + 44412651 44413458 MER4D1 891 - 0 891 63370 43 141 187 52 0 5 20 9 0 13 15 17 74 10 23 5 0 3 19 1 0 15 1 0 92 0 2 200 1 24 66 0 1 30 chain 29159 chrX 155270560 + 44424770 44425076 AluYg6 310 - 4 310 88260 306 chain 36814 chrX 155270560 + 44431706 44432212 LTR10G 522 - 10 508 73785 61 0 2 40 5 4 42 4 0 8 15 12 182 0 1 22 2 0 22 1 0 102 chain 20101 chrX 155270560 + 44432807 44433094 MER41A 554 - 185 465 126824 106 41 34 140 chain 101128 chrX 155270560 + 44435193 44438025 Tigger1 2417 + 29 1477 36481 13 16 1 11 1 0 164 773 0 100 24 28 97 0 1 91 5 6 13 7 16 419 0 1 49 0 3 26 6 1 67 0 11 37 0 2 189 3 0 44 620 1 57 chain 27844 chrX 155270560 + 44441420 44441792 THE1C 375 + 0 375 93545 183 3 4 92 0 1 67 6 7 21 chain 109369 chrX 155270560 + 44441839 44443632 THE1C-int 1605 + 47 1596 34351 49 0 57 176 0 6 75 0 1 34 0 7 219 1 0 7 77 78 482 0 1 182 316 0 175 chain 4779 chrX 155270560 + 44444081 44444153 THE1C 375 + 155 228 197587 30 7 8 35 chain 12069 chrX 155270560 + 44444154 44444299 THE1C 375 + 230 375 151902 145 chain 15573 chrX 155270560 + 44446159 44446384 Tigger3a 397 - 23 258 139663 21 13 12 4 0 1 168 1 11 18 chain 45172 chrX 155270560 + 44449644 44450922 LTR8 732 + 39 732 62848 118 0 6 63 0 1 94 0 27 178 684 61 58 0 2 24 0 2 59 chain 24057 chrX 155270560 + 44454466 44454737 AluSg4 309 + 30 301 110003 271 chain 22560 chrX 155270560 + 44462531 44462823 AluSp 311 + 11 297 117759 42 10 4 240 chain 4401 chrX 155270560 + 44468447 44468498 L1MB2 1706 + 1364 1415 201908 51 chain 16731 chrX 155270560 + 44505599 44506949 LTR8 732 - 0 732 136310 77 1 0 44 1063 435 13 0 6 15 12 5 98 8 20 19 chain 6439 chrX 155270560 + 44518148 44518242 MLT1A0 366 - 209 305 181721 5 0 2 47 1 2 18 1 0 22 chain 9710 chrX 155270560 + 44533939 44534099 THE1B 368 - 205 366 162036 28 5 4 14 7 8 12 6 7 88 chain 4081 chrX 155270560 + 44549876 44549924 MSTD 398 - 1 49 206179 48 chain 23152 chrX 155270560 + 44561106 44561383 AluSp 311 + 12 287 114882 69 2 0 206 chain 6485 chrX 155270560 + 44561526 44561604 L1PA8 5853 + 5775 5853 181358 78 chain 23653 chrX 155270560 + 44562978 44563280 AluSc5 308 - 4 307 112294 226 5 6 71 chain 5004 chrX 155270560 + 44575911 44575987 LTR54B 464 - 9 77 195100 47 8 0 21 chain 9546 chrX 155270560 + 44577364 44577507 MLT2B2 565 - 424 565 162853 11 1 0 57 11 10 63 chain 8841 chrX 155270560 + 44588362 44588470 MSTA 426 - 317 426 166428 5 0 1 103 chain 32576 chrX 155270560 + 44625910 44626322 L1PA16 3655 + 2233 2648 79892 6 0 2 238 1 2 167 chain 12755 chrX 155270560 + 44634350 44634531 LTR54 533 - 0 184 149234 55 3 4 89 1 0 19 1 4 13 chain 38773 chrX 155270560 + 44637519 44638031 LTR12F 595 + 0 588 71048 100 6 18 25 3 1 8 0 66 370 chain 27313 chrX 155270560 + 44640574 44640882 AluYf4 310 + 0 306 95232 132 3 0 74 0 1 99 chain 23142 chrX 155270560 + 44654171 44654439 AluSc 308 + 15 283 114926 268 chain 22763 chrX 155270560 + 44657603 44657877 AluSp 311 - 38 311 116762 141 1 0 132 chain 25134 chrX 155270560 + 44660503 44660802 AluSc5 308 + 8 307 104101 299 chain 22509 chrX 155270560 + 44663217 44663513 AluY 311 + 4 299 117988 119 2 0 11 0 1 8 1 4 6 3 0 146 chain 32000 chrX 155270560 + 44667161 44667517 L1PA4 6152 - 1 359 80864 112 0 1 41 0 1 203 chain 18418 chrX 155270560 + 44672088 44672398 L1MA5A 2387 - 85 354 131721 7 1 0 65 44 15 28 7 0 32 2 0 48 1 0 38 1 0 36 chain 26533 chrX 155270560 + 44681077 44681435 THE1C 375 + 0 355 97921 125 3 0 69 3 4 152 1 0 5 chain 118144 chrX 155270560 + 44681455 44683025 THE1C-int 1605 + 0 1599 31755 396 32 60 130 11 12 64 0 1 38 3 4 49 14 8 519 27 30 239 0 1 48 chain 23040 chrX 155270560 + 44692989 44693271 AluSp 311 - 30 311 115446 149 1 0 132 chain 119281 chrX 155270560 + 44695553 44697931 L1PB3 3668 + 1537 3185 31301 90 0 1 259 425 0 22 0 2 22 6 2 96 7 6 52 322 5 19 10 7 200 1 0 21 2 3 32 0 2 84 0 14 161 1 2 26 5 4 93 1 2 61 0 1 162 2 0 17 1 0 75 0 2 103 chain 21880 chrX 155270560 + 44709194 44709451 AluSp 311 - 34 291 120708 257 chain 25255 chrX 155270560 + 44743076 44743374 AluSp 311 + 13 308 103448 10 3 0 285 chain 48740 chrX 155270560 + 44750794 44751379 LTR10C 591 - 0 583 59920 134 4 0 273 0 4 167 2 0 5 chain 135660 chrX 155270560 + 44769748 44771317 SVA_C 1631 - 6 1615 26900 15 1 0 567 0 1 6 0 45 88 0 4 20 0 1 8 14 15 799 0 1 14 18 4 4 0 1 11 0 1 4 chain 4737 chrX 155270560 + 44772846 44772904 Tigger2a 444 + 291 353 198093 7 0 4 51 chain 22659 chrX 155270560 + 44801283 44801567 AluSc 308 - 16 298 117279 35 1 0 18 6 5 224 chain 42948 chrX 155270560 + 44809997 44810513 LTR10D 510 + 0 510 65480 95 4 0 23 2 0 113 1 0 38 1 2 239 chain 24448 chrX 155270560 + 44830807 44831310 LTR21A 479 - 0 479 107820 45 7 9 6 1 0 74 80 88 49 0 1 115 0 1 12 78 44 15 1 0 20 chain 5440 chrX 155270560 + 44834629 44834708 L1M3e 1964 - 609 687 190603 24 4 3 51 chain 539996 chrX 155270560 + 44842668 44848793 L1PA4 6152 - 9 6150 2818 323 0 3 1462 0 4 175 2 1 309 0 1 688 1 0 789 0 4 1148 6 4 229 0 1 342 8 10 201 0 1 14 0 1 102 0 3 326 chain 33125 chrX 155270560 + 44853825 44854263 LTR10F 562 - 0 562 79019 160 0 1 136 5 36 35 1 85 66 10 18 25 chain 36733 chrX 155270560 + 44858411 44858901 LTR10F 562 - 0 562 73907 179 4 1 66 0 5 56 1 7 17 1 4 23 18 79 125 chain 204964 chrX 155270560 + 44859201 44862021 HERVIP10FH-int 2884 - 60 2735 18859 35 10 4 14 2 1 15 12 11 39 1 0 66 1 0 290 26 0 75 1 0 24 1 0 80 3 5 43 32 0 71 0 1 267 5 4 15 1 0 3 10 0 39 47 38 15 20 3 14 7 1 12 26 12 12 5 2 35 0 4 100 10 5 63 1 0 7 1 0 11 3 0 8 4 1 51 0 1 61 0 1 37 0 2 22 2 0 806 7 1 184 4 0 64 chain 36378 chrX 155270560 + 44865572 44866034 LTR10F 562 - 0 562 74388 99 13 15 197 0 93 72 0 5 81 chain 36801 chrX 155270560 + 44868307 44868871 MER41B 635 - 0 635 73798 35 0 9 26 10 12 42 24 60 104 33 57 125 1 0 38 1 2 125 chain 69154 chrX 155270560 + 44882906 44884006 L1PB1 5432 - 7 1078 48739 7 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 16 16 7 7 1 0 16 4 3 41 2 1 13 3 2 51 34 27 8 0 1 19 1 0 9 1 2 20 4 0 6 12 16 245 1 9 13 8 0 87 2 1 76 6 1 225 0 5 45 chain 13326 chrX 155270560 + 44897842 44898013 L1PA8 5853 + 5688 5853 146985 8 3 0 44 2 1 19 2 0 93 chain 90138 chrX 155270560 + 44898755 44899739 SVA_E 1901 - 0 978 39599 746 9 4 192 2 1 35 chain 33222 chrX 155270560 + 44899757 44900519 SVA_F 1814 - 523 1182 78846 17 1 0 60 198 0 98 126 0 120 1 0 34 1 16 16 5 4 21 0 129 25 10 90 29 chain 12733 chrX 155270560 + 44899835 44899978 SVA_F 1814 - 776 933 128170 75 0 15 18 1 0 49 chain 3067 chrX 155270560 + 44899978 44900033 SVA_F 1814 - 775 825 136316 7 4 0 39 1 0 4 chain 5465 chrX 155270560 + 44900131 44900229 SVA_F 1814 - 889 1160 136316 24 0 169 9 1 2 57 0 3 7 chain 2169 chrX 155270560 + 44900519 44900544 SVA_F 1814 - 782 807 105368 25 chain 84274 chrX 155270560 + 44900562 44901556 SVA_D 2077 - 742 2077 41790 109 9 318 178 0 40 631 0 12 10 0 4 11 1 0 6 1 0 3 22 0 13 chain 117456 chrX 155270560 + 44932136 44933514 L1PA6 6164 - 16 1393 31979 502 4 0 24 0 1 67 1 4 94 1 0 106 0 1 95 1 0 483 chain 13109 chrX 155270560 + 44937183 44937339 L1MB2 1706 - 133 289 147812 156 chain 24497 chrX 155270560 + 44940187 44940476 AluSp 311 - 22 311 107557 289 chain 5078 chrX 155270560 + 44944593 44944682 Tigger5 388 + 301 388 194321 16 13 12 40 1 0 19 chain 55533 chrX 155270560 + 44967763 44968373 L1PA2 6032 + 5418 6026 55398 601 2 0 7 chain 48234 chrX 155270560 + 44981507 44982203 L1MA2 4263 - 150 828 60286 8 1 0 35 0 1 11 10 3 89 1 0 9 2 1 146 11 8 140 1 0 70 2 1 6 3 0 11 1 0 139 chain 40933 chrX 155270560 + 44983165 44983647 L1PA7 6471 + 5982 6467 67994 5 0 3 477 chain 21950 chrX 155270560 + 44985203 44985461 L1PBa 3878 + 1166 1424 120428 258 chain 28600 chrX 155270560 + 44992427 44992972 L1MA3 4352 - 0 519 90728 17 22 24 23 1 0 5 2 1 22 2 0 25 4 0 23 5 7 41 91 71 218 2 0 42 chain 6661 chrX 155270560 + 44997937 44998018 AluJr4 308 + 160 241 179987 81 chain 3853 chrX 155270560 + 44999785 44999832 MER57B2 428 + 0 47 209608 47 chain 7614 chrX 155270560 + 45004403 45004489 L1PA8 5853 - 0 86 173450 86 chain 23786 chrX 155270560 + 45023703 45024010 L1PA7 6471 + 6162 6461 111556 50 2 1 84 8 1 163 chain 4244 chrX 155270560 + 45053352 45053406 MIR 256 - 125 179 203948 54 chain 142108 chrX 155270560 + 45064072 45066334 L1MA3 4352 - 0 4352 25801 21 3 0 3 1 0 14 8 7 19 2 1 5 1 0 9 15 13 35 0 4 16 0 1 4 1 0 23 1 0 58 130 43 44 1 0 4 0 1 8 2 1 292 44 34 174 0 33 32 14 12 36 10 9 8 1 0 171 1 0 270 1 0 4 1 2 181 0 2162 59 0 13 318 1 0 4 0 1 28 1 0 19 1 0 109 39 32 15 chain 3419 chrX 155270560 + 45071877 45071933 MER57E1 380 - 29 84 216787 40 4 3 12 chain 244273 chrX 155270560 + 45075005 45078806 L1PA13 3608 + 113 3549 16542 23 32 44 17 42 31 15 3 5 41 12 10 102 39 37 7 2 0 16 6 2 18 1 0 17 2 0 18 2 0 16 1 0 99 2 0 307 317 0 25 0 1 71 3 4 8 11 0 71 8 9 18 1 0 106 0 1 676 12 7 12 7 3 11 5 9 832 1 0 130 0 8 24 1 0 5 0 1 158 1 0 32 1 0 113 2 0 62 1 0 61 2 0 48 8 4 18 1 0 35 36 24 10 4 1 13 chain 4158 chrX 155270560 + 45082789 45082835 L1M3e 1964 - 1664 1710 205123 46 chain 14713 chrX 155270560 + 45102489 45102701 L1PA8 5853 - 0 206 142228 93 1 0 16 1 0 53 16 12 32 chain 151859 chrX 155270560 + 45103679 45105997 L1MA1 4479 - 289 2584 24358 18 7 0 9 3 1 11 1 0 9 1 0 35 3 1 17 1 2 9 1 0 69 17 21 37 3 0 4 1 0 88 2 1 12 2 0 19 2 1 35 5 8 28 1 0 16 2 0 24 1 0 188 7 8 109 34 31 116 9 5 7 1 0 38 0 1 15 9 11 11 4 0 18 10 8 57 10 11 96 2 0 17 1 0 4 1 2 4 1 0 92 2 1 61 1 0 12 20 25 98 2 1 66 1 0 123 10 11 259 0 3 122 0 2 187 chain 20432 chrX 155270560 + 45113628 45113886 L1PA8 5853 + 5601 5853 125803 7 2 0 71 1 0 10 1 0 51 2 1 19 1 0 93 chain 4540 chrX 155270560 + 45116712 45116764 MER45C 884 - 41 93 200336 52 chain 4299 chrX 155270560 + 45130770 45130817 MLT2B2 565 - 0 47 203241 47 chain 65741 chrX 155270560 + 45134079 45135110 L1PA10 4194 - 2964 3942 50225 52 0 2 22 1 0 275 1 0 395 4 2 80 1 0 7 7 0 10 18 3 12 4 7 9 1 0 4 3 4 11 2 0 11 87 58 14 chain 24868 chrX 155270560 + 45138325 45138617 AluSc5 308 - 5 298 105526 178 0 1 114 chain 71240 chrX 155270560 + 45141112 45141958 L1PA8A 6298 - 7 855 47837 107 0 1 204 0 6 93 2 1 309 0 2 81 6 0 44 chain 51452 chrX 155270560 + 45142347 45143075 MER4A 717 - 0 717 58005 4 1 0 233 6 5 76 8 2 90 0 1 6 0 1 13 12 10 7 4 0 25 0 2 41 0 4 71 9 3 35 0 1 87 chain 5381 chrX 155270560 + 45191907 45191968 FAM 185 - 23 84 191180 61 chain 159759 chrX 155270560 + 45196869 45199590 L1PA13 3608 + 716 3438 23369 150 3 0 48 0 2 131 0 4 33 2 1 21 3 1 6 1 0 178 1 7 129 0 1 10 4 3 68 53 58 196 30 365 109 0 8 16 14 7 468 4 3 225 1 0 4 36 41 112 20 10 29 1 0 103 331 1 9 2 0 62 1 0 27 15 23 6 1 0 5 2 0 26 12 3 13 chain 10534 chrX 155270560 + 45239552 45239819 L1MA4A 3247 - 75 325 158121 17 45 39 9 1 0 6 0 1 4 1 0 113 54 44 17 chain 10114 chrX 155270560 + 45250047 45250335 L1PA15 4387 - 71 344 160020 33 26 19 47 96 89 23 4 3 59 chain 13111 chrX 155270560 + 45261898 45262232 L1PA11 4918 - 289 587 147805 17 134 104 20 1 0 14 2 0 67 2 0 13 2 1 62 chain 233067 chrX 155270560 + 45271884 45275442 L1MA1 4479 - 328 4210 17139 9 1 0 34 3 1 29 1 0 83 0 1 42 3 0 5 1 0 88 1 0 13 3 1 19 2 1 25 0 2 16 40 26 7 0 10 22 5 4 111 0 12 70 1 0 20 56 364 78 0 1 72 2 0 27 1 0 87 9 8 59 1 0 33 3 2 20 20 12 7 0 8 52 1 0 68 1 0 41 5 7 19 26 26 28 1 4 69 0 2 25 0 6 185 0 4 23 30 26 10 0 1 16 0 1 10 1 0 46 0 3 7 3 0 20 5 4 64 6 7 710 0 1 28 4 5 211 0 1 33 0 3 7 2 1 42 0 1 21 2 3 102 38 37 6 0 1 31 0 4 185 0 1 4 1 0 34 0 2 46 1 2 66 2 0 91 chain 110864 chrX 155270560 + 45289511 45290824 L1PA6 6164 - 2 1323 33979 384 2 1 82 6 8 8 0 3 359 1 5 471 chain 4016 chrX 155270560 + 45302079 45302146 L1MA6 2487 - 192 255 207132 4 1 0 14 2 0 26 1 0 19 chain 60751 chrX 155270560 + 45321186 45322137 L1PB3 3668 + 2694 3614 52448 65 7 0 121 0 4 79 0 2 16 8 6 19 23 24 251 1 2 8 1 0 100 1 0 87 20 4 21 2 0 25 3 1 33 11 7 12 3 2 11 8 5 15 chain 400007 chrX 155270560 + 45324463 45330330 L1PB1 5432 - 22 5352 10096 6 1 0 13 1 0 21 1 0 24 2 0 14 10 7 30 5 1 7 6 0 6 1 0 44 6 5 11 2 1 22 1 0 31 2 0 9 20 15 9 1 0 20 3 0 9 1 2 100 1 0 6 2 3 366 3 0 248 2 0 153 296 0 23 2 1 471 4 7 96 12 13 392 0 1 380 5 6 240 1 2 10 6 9 31 0 4 48 0 1 4 6 2 620 0 1 49 2 6 408 23 0 7 1 0 895 0 2 16 203 15 61 5 4 63 29 4 87 0 1 7 8 24 136 chain 22265 chrX 155270560 + 45325694 45325948 L1PA6 6164 + 5905 6159 119054 254 chain 22973 chrX 155270560 + 45347901 45348333 L1MA5 2750 + 2155 2587 115741 197 119 120 57 0 1 34 1 0 5 1 0 18 chain 14710 chrX 155270560 + 45351279 45351511 THE1B 368 - 61 298 142241 67 1 0 10 4 3 13 1 5 9 0 3 28 1 0 53 8 9 37 chain 122390 chrX 155270560 + 45362500 45364153 SVA_B 1603 - 0 1583 30254 6 2 0 603 1 4 6 0 2 24 25 109 21 0 3 159 37 0 168 113 0 132 0 1 293 3 8 23 14 0 8 2 0 13 chain 19461 chrX 155270560 + 45371243 45371491 L1PA8 5853 + 5609 5853 128784 69 2 1 11 1 0 4 0 1 6 1 0 39 2 1 19 1 0 93 chain 19077 chrX 155270560 + 45379305 45379560 L1PA8 5853 - 0 245 129887 93 1 0 19 2 1 42 6 0 5 1 0 14 5 4 67 chain 5397 chrX 155270560 + 45403333 45403402 THE1D-int 1627 + 14 82 191019 23 1 0 45 chain 4909 chrX 155270560 + 45405036 45405096 MSTA-int 1630 - 8 68 196175 60 chain 9387 chrX 155270560 + 45407033 45407166 MSTA-int 1630 - 1498 1630 163625 32 3 1 85 1 2 12 chain 51629 chrX 155270560 + 45417934 45418609 L1P4 1494 - 84 757 57876 20 2 0 41 1 0 213 0 1 398 chain 16206 chrX 155270560 + 45421856 45422179 Tigger3a 397 + 14 397 137731 27 49 98 22 7 17 143 33 34 42 chain 3976 chrX 155270560 + 45434245 45434291 MADE1 96 - 50 96 207745 46 chain 34708 chrX 155270560 + 45447712 45448172 L1MA2 4263 - 1499 1962 76609 116 9 12 335 chain 46772 chrX 155270560 + 45448925 45449419 L1HS 6032 + 5538 6032 61395 494 chain 50334 chrX 155270560 + 45463593 45464147 L1PA2 6032 - 0 555 58763 500 0 1 54 chain 11059 chrX 155270560 + 45474724 45474911 LTR12 884 + 171 399 155965 10 0 25 89 30 48 38 2 0 18 chain 43719 chrX 155270560 + 45484888 45485399 L1PA6 6164 - 2 509 64544 388 4 0 119 chain 20575 chrX 155270560 + 45486065 45486346 L1PA13 3608 - 148 423 125378 12 2 0 5 2 0 17 0 2 30 2 0 3 1 0 118 2 0 58 0 1 29 chain 25643 chrX 155270560 + 45493966 45494340 THE1A 353 + 0 353 101525 81 3 4 24 7 4 209 23 4 27 chain 34821 chrX 155270560 + 45498261 45498664 L1PA6 6164 + 5754 6156 76445 88 2 1 313 chain 182685 chrX 155270560 + 45512667 45515143 L1PA13 3608 - 143 2632 20717 17 8 4 50 2 0 3 1 0 56 1 0 60 3 1 114 13 12 20 1 0 119 0 3 129 4 5 456 11 10 156 0 11 22 16 21 161 1 0 7 0 2 27 0 2 29 16 20 203 1 0 247 4 3 367 5 6 146 chain 34033 chrX 155270560 + 45516248 45516680 THE1B-int 1605 + 0 432 77576 107 3 0 6 7 10 309 chain 78151 chrX 155270560 + 45516681 45517546 L1PA3long 6157 + 5291 6157 44438 187 5 6 673 chain 40915 chrX 155270560 + 45519078 45519805 L1PB1 5432 + 4716 5404 68017 86 19 16 278 7 4 14 3 0 24 1 0 5 2 1 11 24 18 47 2 1 15 1 0 45 1 0 15 67 50 24 1 0 22 1 0 12 chain 104741 chrX 155270560 + 45523161 45524577 LTR12C 1709 - 0 1709 35558 84 1 0 67 1 0 21 16 0 194 0 8 107 11 4 20 0 1 23 2 143 200 1 0 15 0 119 230 7 9 12 5 0 64 7 50 52 65 75 211 chain 3349 chrX 155270560 + 45548906 45548944 L1PA13 3608 - 1443 1481 218069 38 chain 22680 chrX 155270560 + 45550471 45550786 L1PA13 3608 + 3128 3436 117165 32 1 0 113 2 0 63 1 0 53 1 0 7 2 0 40 chain 61030 chrX 155270560 + 45561063 45561829 LTR12 884 - 0 884 52315 411 1 13 84 2 0 15 0 2 176 0 107 51 1 0 25 chain 12085 chrX 155270560 + 45584307 45584498 L1PA16 3655 + 3220 3410 151859 4 0 1 23 7 0 5 0 7 35 12 10 105 chain 26596 chrX 155270560 + 45587572 45587866 AluYc3 301 - 12 301 97678 168 5 0 121 chain 54386 chrX 155270560 + 45593284 45593996 THE1D-int 1627 + 0 722 56108 38 1 0 481 0 1 8 0 1 48 9 11 55 3 10 69 chain 43130 chrX 155270560 + 45594030 45594559 HERVL-int 5654 - 2935 3467 65254 24 3 5 268 0 1 61 1 2 4 1 0 167 chain 6838 chrX 155270560 + 45596035 45596111 HERVL-int 5654 - 3391 3467 178672 76 chain 39248 chrX 155270560 + 45672310 45672834 L1PA8 5853 - 0 522 70390 93 1 0 16 1 0 42 0 4 19 1 0 69 7 5 40 2 1 233 chain 45842 chrX 155270560 + 45672835 45673400 L1PA8 5853 + 4627 5188 62187 255 1 0 128 2 0 84 2 1 93 chain 16397 chrX 155270560 + 45673704 45673902 L1PA8A 6298 + 5668 5866 137215 198 chain 24512 chrX 155270560 + 45685286 45685679 MSTC 436 - 0 382 107481 163 37 43 72 25 9 52 1 0 43 chain 17241 chrX 155270560 + 45693458 45693766 MER47A 366 + 0 316 134953 10 0 10 43 50 51 75 1 0 29 5 4 79 1 0 15 chain 8689 chrX 155270560 + 45695207 45695371 L1MA3 4352 + 4169 4327 167251 6 0 4 78 10 3 22 1 0 5 12 11 16 1 0 13 chain 15501 chrX 155270560 + 45730927 45731129 Tigger1a_Art 216 - 0 205 139894 156 5 7 20 0 1 21 chain 15930 chrX 155270560 + 45754573 45754791 MER30 238 + 19 237 138577 68 5 8 103 3 0 39 chain 3850 chrX 155270560 + 45763372 45763430 LTR33A_ 513 - 97 158 209648 18 6 9 34 chain 33188 chrX 155270560 + 45765020 45765577 L1PA15 4387 - 21 555 78917 10 1 0 27 9 4 10 3 1 18 4 5 21 6 3 50 2 1 9 4 0 22 1 0 24 13 11 20 1 0 21 10 9 168 1 0 37 7 5 58 chain 30725 chrX 155270560 + 45767092 45767485 PRIMA4_LTR 623 - 20 401 82994 334 13 6 6 5 0 35 chain 25767 chrX 155270560 + 45769109 45769410 AluY 311 + 0 298 101017 126 5 0 133 9 11 28 chain 3752 chrX 155270560 + 45778920 45778970 MADE1 96 + 1 67 211105 28 0 16 22 chain 5175 chrX 155270560 + 45784408 45784524 Tigger1 2417 + 2303 2416 193303 38 11 12 10 4 5 20 10 5 23 chain 14708 chrX 155270560 + 45793812 45793973 L1PA5 6144 + 5889 6050 142246 161 chain 34271 chrX 155270560 + 45805663 45806160 L1PA8 5853 - 2 458 77248 91 1 0 19 2 1 52 2 1 8 1 0 69 2 0 15 0 1 19 16 11 39 31 0 130 chain 78747 chrX 155270560 + 45835366 45836496 L1PB1 5432 + 4316 5409 44171 297 11 8 413 19 19 50 1 2 9 5 0 24 1 0 9 16 11 11 7 5 46 2 1 16 1 0 43 1 0 16 3 0 15 8 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 30762 chrX 155270560 + 45842319 45842747 L1PA16 3655 + 3141 3570 82936 62 1 0 4 0 2 5 15 16 20 1 0 4 0 1 35 2 0 207 0 1 72 chain 156429 chrX 155270560 + 45851701 45853941 L1MA2 4263 - 150 2434 23807 9 1 0 26 0 3 17 13 20 55 9 20 5 1 0 101 1 0 49 3 0 25 0 1 21 0 3 93 7 6 73 6 2 25 1 0 128 6 9 156 0 2 28 0 1 48 25 50 220 8 9 250 32 30 71 0 4 314 1 0 4 5 1 264 2 0 66 0 2 5 0 3 15 3 2 48 chain 538072 chrX 155270560 + 45857753 45863916 L1PA5 6144 - 0 6144 3140 10 2 0 21 0 2 1489 2 0 2314 7 0 1139 9 0 429 0 1 7 1 0 131 2 1 600 chain 312516 chrX 155270560 + 45880180 45884689 L1PB1 5432 + 986 5424 12911 253 1 0 154 1 0 9 2 0 5 25 11 184 0 1 11 0 1 84 10 3 57 0 1 10 8 1 328 0 2 439 1 0 24 0 3 27 314 25 147 0 1 57 10 10 300 1 9 335 0 6 248 3 0 84 0 3 43 0 1 157 0 240 305 4 5 56 3 0 273 0 2 198 5 6 9 3 0 24 38 43 39 1 2 4 2 0 11 1 0 42 34 29 19 8 5 14 2 0 24 1 0 20 2 1 13 1 0 16 1 0 4 chain 7912 chrX 155270560 + 45887397 45887497 MER33 330 - 201 301 171569 100 chain 535843 chrX 155270560 + 45911471 45917884 L1PA4 6152 - 9 6112 3466 145 7 0 2379 318 0 3347 1 16 216 chain 36588 chrX 155270560 + 45920045 45920508 L1PA8 5853 - 898 1351 73650 47 6 3 76 0 1 154 8 1 26 0 2 20 3 0 123 chain 71571 chrX 155270560 + 45920508 45921399 L1PA8 5853 + 4957 5853 47669 53 2 0 127 0 1 81 0 2 343 1 0 44 2 0 80 1 0 13 0 10 29 2 1 19 4 3 90 chain 36605 chrX 155270560 + 45931784 45932458 L1PA16 3655 - 36 685 74091 16 47 28 85 7 9 60 5 6 69 0 3 53 3 1 58 17 10 10 24 23 66 1 0 7 3 0 11 29 31 103 chain 518740 chrX 155270560 + 45933995 45940167 L1PA6 6164 - 3 6164 5299 178 2 1 5 0 1 474 1 0 1902 13 0 329 0 1 645 0 1 9 0 1 289 14 0 1273 0 1 586 6 5 109 22 36 315 chain 5605 chrX 155270560 + 45945227 45945349 L1MC1 2226 - 123 234 189035 21 46 35 55 chain 4979 chrX 155270560 + 45946156 45946219 L1MC1 2226 + 1726 1789 195374 63 chain 540186 chrX 155270560 + 45946259 45952706 L1PA7 6471 + 1 6470 2792 134 5 0 270 8 0 35 5 20 570 0 2 329 1 0 11 1 0 6 1 2 178 1 0 135 0 1 246 1 2 93 1 0 33 0 6 557 1 3 72 3 7 561 2 3 226 1 0 982 1 2 1127 0 3 195 0 2 501 0 1 154 chain 4077 chrX 155270560 + 45956829 45956875 MLT2A2 560 + 514 560 206242 46 chain 11808 chrX 155270560 + 45960467 45960737 L1PA13 3608 - 120 345 152992 22 32 27 37 43 11 26 8 3 26 1 0 63 2 0 10 chain 47673 chrX 155270560 + 45961500 45963295 L1PA10 4194 - 44 1855 14634 34 3 0 155 1 0 53 6 0 355 6 26 81 0 2 74 1 0 6 0 2 315 0 1 45 0 1 373 12 13 275 chain 532968 chrX 155270560 + 45963305 45969443 L1PA4 6152 + 10 6152 3854 92 24 24 2194 4 1 1976 0 1 24 3 0 641 0 13 329 2 0 698 7 0 138 0 5 6 chain 68761 chrX 155270560 + 45969460 45972049 L1PA10 4194 - 1857 4015 14634 250 43 6 556 4 5 232 0 1 109 0 9 244 0 8 26 8 5 184 358 0 85 2 3 130 3 1 60 0 1 19 30 21 7 0 3 9 1 0 7 1 0 15 83 55 15 2 0 21 11 9 9 2 0 7 13 9 9 3 1 9 2 0 11 2 0 7 chain 215227 chrX 155270560 + 45972910 45975977 L1PA13 3608 - 334 3350 18150 65 2 1 48 1 0 24 11 7 135 47 44 5 0 3 243 19 13 40 2 3 126 6 7 96 7 2 54 0 1 235 1 0 239 0 3 704 6 0 69 16 8 399 32 24 45 2 0 4 0 1 92 1 0 18 2 0 18 7 5 12 1 0 18 6 2 16 2 0 12 31 29 113 2 0 33 chain 2594 chrX 155270560 + 45981338 45981372 L1MB7 1623 - 130 163 231756 15 1 0 18 chain 32592 chrX 155270560 + 45993837 45994246 L1PA8 5853 + 5442 5853 79863 122 1 0 45 2 0 41 0 8 21 1 0 61 2 1 19 1 0 93 chain 82037 chrX 155270560 + 46002372 46003687 L1MA1 4479 + 2897 4172 42746 19 24 24 17 3 1 9 28 25 165 2 0 18 4 0 76 1 0 4 13 8 43 11 6 77 3 0 93 1 0 36 2 0 163 16 16 16 2 1 21 2 0 20 1 0 71 1 0 19 2 0 14 1 0 88 1 0 5 2 0 46 0 10 70 1 0 5 2 1 22 2 0 36 1 0 9 1 0 4 6 1 16 chain 5450 chrX 155270560 + 46006367 46006429 L1PA2 6032 + 5966 6028 190525 62 chain 5991 chrX 155270560 + 46016826 46016952 MER5A 189 + 13 163 185322 5 2 0 53 38 64 28 chain 23851 chrX 155270560 + 46029885 46030250 THE1B 368 - 0 368 111181 29 0 4 42 1 0 72 12 13 6 2 0 34 2 0 116 12 17 20 2 0 15 chain 121259 chrX 155270560 + 46030250 46031837 THE1B-int 1605 - 0 1605 30616 141 4 0 228 19 18 158 0 2 61 5 6 224 21 15 71 1 0 8 0 1 9 4 5 202 1 26 430 chain 352958 chrX 155270560 + 46033005 46037765 L1PB1 5432 - 10 4719 11527 18 1 0 12 1 0 22 1 0 4 0 2 18 2 0 14 1 0 5 3 1 18 3 1 10 9 1 15 2 1 20 8 7 16 1 0 18 1 0 51 2 0 6 8 4 14 8 6 24 3 0 8 7 8 428 0 2 40 3 0 661 17 5 230 6 0 808 0 1 81 1 0 16 1 0 300 1 7 9 5 0 11 1 2 137 0 1 402 0 8 110 14 0 326 2 0 63 12 7 20 62 64 320 0 2 8 0 5 311 chain 4268 chrX 155270560 + 46041059 46041107 L1MA6 2487 + 2162 2210 203639 48 chain 72553 chrX 155270560 + 46046329 46047232 HERV17-int 4347 + 1772 4347 47242 163 1 0 51 1 0 5 0 1 68 0 1672 13 6 7 181 1 0 4 5 11 10 5 0 389 chain 23251 chrX 155270560 + 46048684 46049013 LTR17 781 + 0 326 114441 56 1 0 89 12 11 23 1 0 57 1 0 46 0 1 43 chain 3479 chrX 155270560 + 46066953 46067172 LTR16A 446 + 202 420 215687 37 164 163 18 chain 9032 chrX 155270560 + 46092384 46092533 L1MA4A 3247 + 3022 3165 165434 73 0 1 11 1 0 24 23 17 17 chain 54544 chrX 155270560 + 46103238 46103917 LTR12_ 688 - 0 688 55999 16 5 15 386 1 0 271 chain 30207 chrX 155270560 + 46104504 46104880 THE1C 375 + 0 375 84172 348 2 1 26 chain 30933 chrX 155270560 + 46107353 46107691 L1PA4 6152 + 5814 6152 82625 338 chain 17941 chrX 155270560 + 46111534 46111882 MSTA 426 + 0 392 133002 10 0 1 89 1 0 8 15 39 10 1 5 43 5 1 6 0 4 11 40 38 22 2 0 9 1 21 75 chain 5829 chrX 155270560 + 46116393 46116462 LTR56 451 + 18 87 186868 69 chain 65581 chrX 155270560 + 46121052 46121842 LTR17 781 - 0 781 50303 57 3 0 8 8 11 378 0 1 27 10 0 299 chain 37379 chrX 155270560 + 46133070 46133557 LTR10F 562 + 0 562 72992 33 0 4 66 0 56 73 0 3 21 7 0 10 5 11 90 0 13 182 chain 167570 chrX 155270560 + 46134172 46136097 SVA_F 1814 + 0 1814 22329 930 0 1 16 0 15 186 127 0 666 chain 8355 chrX 155270560 + 46135304 46135431 SVA_F 1814 + 1021 1099 151274 9 49 0 69 chain 2855 chrX 155270560 + 46135313 46135344 SVA_F 1814 + 917 948 189782 31 chain 23823 chrX 155270560 + 46145653 46145993 THE1C 375 + 0 347 111348 40 0 5 97 0 4 35 5 6 41 18 14 51 0 1 53 chain 28464 chrX 155270560 + 46164547 46164889 L1PA7 6471 + 6117 6468 91321 307 0 9 35 chain 20978 chrX 155270560 + 46174784 46175025 L1PA3long 6157 + 5916 6157 124000 241 chain 9651 chrX 155270560 + 46188734 46188910 MLT1C 463 + 17 181 162344 70 18 21 16 15 1 9 1 0 47 chain 341757 chrX 155270560 + 46193423 46199040 L1PB1 5432 + 832 5424 11844 301 0 1 261 1 0 7 8 0 33 6 0 9 22 17 124 2 0 230 68 16 13 0 4 640 348 19 21 0 1 258 0 2 927 5 11 342 1 2 557 310 1 52 319 0 22 0 2 99 12 50 74 0 3 54 6 23 5 0 2 88 53 11 20 1 0 13 16 11 9 2 0 40 3 2 11 2 1 17 1 0 43 1 0 8 58 43 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 108407 chrX 155270560 + 46216596 46218723 L1MA2 4263 - 149 1942 34588 10 1 0 34 23 16 16 38 39 33 1 0 11 2 1 148 3 0 144 1 0 29 4 7 39 6 3 91 2 1 57 0 1 108 5 6 287 5 10 43 9 0 7 0 9 61 3 0 5 0 6 94 522 197 41 0 4 23 13 1 27 0 3 181 chain 49582 chrX 155270560 + 46219212 46219816 LTR10C 591 - 7 591 59336 72 1 3 388 22 0 121 chain 25779 chrX 155270560 + 46220564 46221224 L1M1 2793 - 854 1216 100970 35 1 11 155 0 1 25 318 0 41 0 9 85 chain 17441 chrX 155270560 + 46221893 46222113 Tigger1 2417 - 1171 1394 134401 199 8 11 13 chain 3487 chrX 155270560 + 46223995 46224187 MER3 215 - 8 205 215573 6 1 0 14 96 0 10 25 127 40 chain 36618 chrX 155270560 + 46227796 46228266 MER41A 554 - 82 554 74070 5 0 1 177 0 19 10 24 5 162 0 1 92 chain 6235 chrX 155270560 + 46237005 46237097 L1PA8 5853 - 19 103 183278 74 8 0 10 chain 5137 chrX 155270560 + 46239246 46239309 MER58A 224 - 11 74 193712 63 chain 169455 chrX 155270560 + 46254121 46256474 SVA_D 2077 - 18 2066 22120 320 0 10 247 226 0 274 98 0 154 0 1 10 0 1 4 1 4 31 1 0 8 44 16 27 0 36 155 3 0 34 41 4 35 3 0 38 0 40 599 chain 3315 chrX 155270560 + 46254688 46254730 SVA_D 2077 - 947 989 163601 42 chain 12854 chrX 155270560 + 46254731 46254914 SVA_D 2077 - 637 869 79071 3 0 49 180 chain 4967 chrX 155270560 + 46255202 46255263 SVA_D 2077 - 1010 1073 125788 10 21 23 30 chain 1532 chrX 155270560 + 46255495 46255539 SVA_D 2077 - 778 822 98037 44 chain 1136 chrX 155270560 + 46255765 46255799 SVA_D 2077 - 1280 1314 174449 34 chain 26453 chrX 155270560 + 46259121 46259500 MSTA 426 - 0 426 98223 27 0 4 71 5 24 64 3 0 20 0 2 66 23 48 100 chain 552890 chrX 155270560 + 46269329 46275473 L1PA4 6152 - 6 6151 1078 132 2 0 732 0 4 543 3 0 224 0 1 2350 0 1 867 0 1 261 1 0 1029 chain 3374 chrX 155270560 + 46287480 46287515 LTR16A 446 + 236 271 217609 35 chain 5191 chrX 155270560 + 46302322 46302408 MER5A1 166 + 39 126 193139 43 13 14 30 chain 10511 chrX 155270560 + 46314284 46314408 MER30 238 + 114 238 158199 124 chain 22289 chrX 155270560 + 46319583 46319866 AluSp 311 + 6 296 118952 13 1 6 104 1 3 164 chain 32106 chrX 155270560 + 46330853 46331402 L1MC2 1988 - 72 648 80675 48 19 21 15 5 6 31 1 0 26 2 8 57 28 34 139 1 5 48 7 15 45 0 1 4 6 5 26 0 1 41 chain 33039 chrX 155270560 + 46338240 46338958 THE1C-int 1605 + 0 411 79157 18 0 2 56 0 4 264 317 4 63 chain 508046 chrX 155270560 + 46339020 46345951 L1PA6 6164 - 2 6164 6315 8 7 0 894 0 42 214 0 5 344 0 5 151 0 2 65 0 1 244 517 0 101 0 1 389 2 1 395 1 0 115 2 0 5 5 1 499 0 1 354 6 0 344 0 1 132 300 0 579 0 1 5 1 0 330 0 5 103 0 17 230 12 11 118 19 0 162 0 2 162 0 9 109 2 0 5 chain 45398 chrX 155270560 + 46340953 46341464 MER9a1 513 - 0 513 62599 288 0 1 165 0 1 58 chain 33027 chrX 155270560 + 46345951 46346514 HERVK11-int 2540 - 833 1484 79176 140 4 89 189 21 1 34 13 2 26 22 11 18 28 24 18 3 54 36 2 0 9 chain 51621 chrX 155270560 + 46349134 46349722 MER11C 1089 - 16 606 57881 145 0 1 328 0 1 115 chain 72060 chrX 155270560 + 46351651 46352510 L1PA8A 6298 + 5400 6290 47455 94 0 5 175 0 1 503 0 17 20 0 8 67 chain 28254 chrX 155270560 + 46355319 46355689 THE1B 368 - 0 368 92096 176 2 0 19 2 1 61 3 4 107 chain 42178 chrX 155270560 + 46367904 46368361 L1PA3long 6157 - 1506 1962 66307 10 1 0 446 chain 126192 chrX 155270560 + 46368361 46369732 L1PA3long 6157 + 4784 6157 29037 1366 0 2 5 chain 5923 chrX 155270560 + 46377213 46377285 U6 107 + 17 89 185952 72 chain 16090 chrX 155270560 + 46392186 46392412 MER30 238 - 4 237 138089 35 0 3 70 4 0 7 11 19 99 chain 3239 chrX 155270560 + 46396296 46396334 LTR87 602 - 122 160 220242 38 chain 50738 chrX 155270560 + 46427503 46428442 PABL_B 668 - 0 668 58473 85 2 0 296 324 51 166 0 4 66 chain 24458 chrX 155270560 + 46451148 46451480 L1PA8 5853 - 0 325 107762 93 1 0 19 2 1 52 1 0 9 5 4 66 2 0 45 1 0 36 chain 3089 chrX 155270560 + 46514337 46514371 MER33 330 + 53 87 223107 34 chain 547234 chrX 155270560 + 46514792 46520817 L1PA3long 6157 + 0 6157 1799 5 2 0 125 33 34 612 0 128 1647 0 1 1392 0 1 759 0 4 1116 1 0 333 chain 9043 chrX 155270560 + 46527973 46528107 L1MB2 1706 + 1367 1500 165357 5 2 0 28 4 5 95 chain 8340 chrX 155270560 + 46548127 46548245 L1MB7 1623 - 442 557 169173 78 0 1 27 4 0 9 chain 31798 chrX 155270560 + 46549057 46549501 L1PA8 5853 - 6 513 81174 85 1 0 18 1 0 56 1 0 9 1 0 71 2 0 44 1 0 107 33 103 14 chain 2938 chrX 155270560 + 46549455 46549487 L1PA8 5853 + 5308 5340 147029 32 chain 9091 chrX 155270560 + 46549501 46549600 L1PA8 5853 + 5354 5453 147029 99 chain 5054 chrX 155270560 + 46556625 46556761 L1MA8 2339 + 2130 2262 194589 27 2 3 33 44 40 24 1 0 5 chain 79700 chrX 155270560 + 46556809 46557856 MER11C 1089 + 0 1064 43734 246 0 9 62 0 4 212 50 50 107 1 5 4 1 0 34 4 5 127 0 1 50 1 0 148 chain 5881 chrX 155270560 + 46565637 46565715 MADE1 96 - 2 96 186358 35 1 17 42 chain 152443 chrX 155270560 + 46577162 46578886 L1PA5 6144 + 4414 6141 24289 174 1 0 683 1 2 443 0 2 92 0 1 330 chain 5378 chrX 155270560 + 46626314 46626427 L1ME1 1623 + 1376 1484 191209 42 40 35 31 chain 12118 chrX 155270560 + 46635822 46637070 MER41B 635 + 0 635 151750 81 1 11 11 1060 437 95 chain 10875 chrX 155270560 + 46644912 46645144 L1MC1 2226 + 1756 1981 156679 88 6 0 9 73 73 4 1 0 51 chain 126792 chrX 155270560 + 46680151 46682124 L1M1 2793 + 673 2685 28859 24 102 78 27 1 0 29 11 8 54 5 3 5 1 0 70 4 56 15 0 2 138 1 0 57 0 11 19 4 0 6 11 8 246 20 24 111 5 0 100 9 8 106 7 0 21 0 7 112 0 1 82 1 4 15 0 4 5 0 2 71 16 17 58 2 1 19 6 0 7 0 9 76 0 1 43 1 0 112 2 1 5 0 1 64 1 5 7 1 0 46 1 0 11 chain 3634 chrX 155270560 + 46686127 46686166 MER66B 489 - 156 195 213098 39 chain 3399 chrX 155270560 + 46701732 46701770 L1MA4 2864 + 2766 2804 217080 38 chain 73191 chrX 155270560 + 46703619 46704436 L1PA5 6144 - 4 819 46930 705 1 0 74 1 0 36 chain 5761 chrX 155270560 + 46735893 46735986 MER2B 336 + 200 312 187529 52 6 0 18 5 30 12 chain 28019 chrX 155270560 + 46737527 46737831 AluYa5 310 + 0 301 92933 132 3 0 169 chain 3458 chrX 155270560 + 46780943 46780982 MER68B 564 + 0 39 216025 39 chain 5583 chrX 155270560 + 46786238 46786306 L1MD2 1676 - 273 344 189244 20 0 3 48 chain 44523 chrX 155270560 + 46800530 46801169 L1PA16 3655 - 63 733 63553 15 0 13 76 0 6 122 5 18 52 2 0 44 1 0 32 17 16 72 0 2 139 1 0 24 2 0 20 0 4 15 chain 3101 chrX 155270560 + 46819279 46819358 MADE2 80 + 0 80 222908 26 29 30 24 chain 6942 chrX 155270560 + 46831488 46831577 MER58B 340 + 71 160 177878 89 chain 22439 chrX 155270560 + 46869643 46869917 AluSp 311 - 25 311 118304 232 7 19 35 chain 5133 chrX 155270560 + 46891641 46891765 MER58C 217 - 8 151 193755 14 13 15 10 11 12 32 9 25 35 chain 11816 chrX 155270560 + 46895572 46895701 L1PA2 6032 - 834 963 152564 129 chain 76266 chrX 155270560 + 46895701 46896522 L1PA2 6032 + 5210 6030 45330 147 1 0 673 chain 20192 chrX 155270560 + 46897557 46897901 L1MA2 4263 - 205 515 126555 97 5 3 93 17 14 45 40 10 19 0 1 28 chain 33588 chrX 155270560 + 46899649 46900129 MER1A 529 + 0 529 78260 15 18 22 38 20 60 318 8 13 63 chain 69521 chrX 155270560 + 46932039 46932805 L1PA2 6032 + 5263 6032 48598 751 1 4 14 chain 138092 chrX 155270560 + 46968754 46970971 LTR12C 1709 - 0 1709 26471 481 0 4 106 3 1 5 1 0 46 234 0 30 262 32 116 40 44 7 1 0 107 44 0 688 5 1 41 chain 4156 chrX 155270560 + 46969400 46969454 LTR12C 1709 - 888 942 160560 54 chain 5025 chrX 155270560 + 46969454 46969532 LTR12C 1709 - 705 783 127453 78 chain 5351 chrX 155270560 + 46969532 46969630 LTR12C 1709 - 705 803 123263 98 chain 3672 chrX 155270560 + 46969706 46969763 LTR12C 1709 - 1001 1058 127453 57 chain 8408 chrX 155270560 + 46969766 46969920 LTR12C 1709 - 865 1059 123263 7 1 0 93 1 42 52 chain 3305 chrX 155270560 + 46970038 46970078 LTR12C 1709 - 743 783 169153 40 chain 3049 chrX 155270560 + 46970193 46970237 LTR12C 1709 - 820 861 125984 16 4 0 9 0 1 15 chain 16421 chrX 155270560 + 46975858 46976086 L1M1 2793 + 2122 2353 137149 44 0 3 62 1 0 55 4 5 62 chain 12365 chrX 155270560 + 46986359 46986518 THE1D 372 - 212 367 150776 25 4 0 130 chain 5441 chrX 155270560 + 46987598 46987658 HERVL40-int 1241 - 711 771 190602 60 chain 10058 chrX 155270560 + 46991359 46991928 L1PB1 5432 - 2 252 160281 5 1 0 7 1 0 14 1 0 13 2 1 20 1 0 22 39 35 6 0 7 12 8 7 45 319 4 11 2 1 40 chain 26920 chrX 155270560 + 47009216 47009520 AluSp 311 - 9 311 96555 170 2 0 132 chain 25697 chrX 155270560 + 47018907 47019254 L1P4 1494 + 819 1191 101297 163 2 0 6 0 2 68 0 3 75 1 23 32 chain 25025 chrX 155270560 + 47063140 47063436 AluSp 311 - 6 301 104659 75 1 0 220 chain 14782 chrX 155270560 + 47066684 47066884 MER30 238 - 2 206 141994 118 11 15 71 chain 8758 chrX 155270560 + 47110013 47110261 MSTA 426 - 21 270 166873 42 28 12 30 17 38 16 44 41 10 0 4 6 6 1 49 chain 56466 chrX 155270560 + 47111407 47112032 L1PA3long 6157 - 2 627 54870 625 chain 4053 chrX 155270560 + 47116590 47116634 MER50 708 + 641 685 206593 44 chain 12996 chrX 155270560 + 47126412 47126608 MER30 238 + 25 235 148262 70 20 37 67 3 0 36 chain 26301 chrX 155270560 + 47129050 47129358 AluY 311 + 0 304 98824 130 4 0 174 chain 42297 chrX 155270560 + 47144747 47145304 LTR19B 566 - 0 566 66272 52 0 3 13 45 48 147 0 4 181 1 0 118 chain 39980 chrX 155270560 + 47152982 47153532 LTR19B 566 - 0 566 69344 52 0 3 13 0 9 35 5 4 11 0 12 131 5 0 83 1 0 91 5 4 50 0 12 8 13 1 47 chain 4194 chrX 155270560 + 47161266 47161388 LTR49 580 - 446 569 204632 15 57 58 50 chain 4904 chrX 155270560 + 47162659 47162721 MER4C 627 - 0 62 196238 62 chain 11293 chrX 155270560 + 47183255 47183383 L1PA5 6144 + 6001 6129 155076 128 chain 6567 chrX 155270560 + 47187287 47187363 MER30 238 - 26 102 180722 76 chain 3182 chrX 155270560 + 47189868 47189906 L1MD1 2063 + 928 966 221276 38 chain 25264 chrX 155270560 + 47199264 47199564 AluSc 308 + 0 299 103396 125 2 1 173 chain 6372 chrX 155270560 + 47211262 47211337 U6 107 - 21 96 182230 75 chain 24663 chrX 155270560 + 47214447 47214738 AluSp 311 - 9 300 106654 291 chain 6229 chrX 155270560 + 47240649 47240752 MER50 708 - 576 692 183324 29 1 0 22 0 17 11 4 0 6 3 4 27 chain 31890 chrX 155270560 + 47241385 47242110 MER4A 717 - 192 717 81025 131 20 57 69 4 0 12 3 0 62 244 3 63 10 0 55 4 24 44 0 1 4 chain 24951 chrX 155270560 + 47246523 47246811 AluSp 311 - 14 301 105050 130 1 0 157 chain 23314 chrX 155270560 + 47249851 47250115 AluSp 311 + 29 293 114131 264 chain 6472 chrX 155270560 + 47254754 47254825 MLT2C1 407 - 294 365 181464 71 chain 15977 chrX 155270560 + 47268114 47268352 MSTA 426 - 178 426 138422 12 2 0 18 12 17 45 8 12 14 2 0 12 0 4 10 0 1 103 chain 23805 chrX 155270560 + 47283149 47283491 AluSc 308 + 4 305 111447 123 56 15 163 chain 6336 chrX 155270560 + 47290133 47290210 MSTA 426 + 337 414 182496 77 chain 8287 chrX 155270560 + 47319258 47319355 AluSq2 311 + 200 297 169474 97 chain 29563 chrX 155270560 + 47328429 47328738 AluYa5 310 + 1 310 86367 309 chain 3384 chrX 155270560 + 47354040 47354089 L1MA8 2339 - 130 173 217389 13 6 0 30 chain 24868 chrX 155270560 + 47363216 47363592 MLT2A1 477 - 19 477 105528 27 4 0 6 0 84 129 9 8 31 6 10 20 0 1 53 6 5 65 1 0 19 chain 6894 chrX 155270560 + 47394280 47394364 L1MD1 2063 + 1098 1182 178227 84 chain 3946 chrX 155270560 + 47397403 47397454 L1MC4 1079 + 286 337 208177 51 chain 22970 chrX 155270560 + 47406803 47407077 AluSz 310 + 28 302 115749 274 chain 26120 chrX 155270560 + 47454114 47454424 AluSp 311 - 0 310 99525 310 chain 37144 chrX 155270560 + 47458653 47459152 MER75 514 - 0 480 73316 15 1 0 155 18 0 310 chain 8360 chrX 155270560 + 47488572 47488683 MER20 218 + 0 110 169075 82 1 0 28 chain 3095 chrX 155270560 + 47505347 47505399 MIR 256 + 88 142 223012 20 6 8 26 chain 3749 chrX 155270560 + 47525039 47525083 LTR64 526 + 482 526 211146 44 chain 36691 chrX 155270560 + 47526214 47526856 L1MA3 4352 - 0 614 73967 24 1 0 14 1 0 26 1 0 6 1 0 24 2 0 22 4 0 9 0 1 19 5 7 81 92 67 92 8 13 48 2 1 160 chain 107253 chrX 155270560 + 47528614 47529796 L1PA3long 6157 - 1 1183 34897 665 1 0 329 2 3 185 chain 40002 chrX 155270560 + 47530422 47531026 L1M1 2793 - 1071 2017 69318 51 1 0 57 0 352 11 4 0 71 2 1 69 0 4 103 1 0 100 2 1 9 2 0 40 25 22 22 11 10 23 chain 47130 chrX 155270560 + 47532517 47533083 L1PA8A 6298 - 17 583 61101 88 16 16 462 chain 58594 chrX 155270560 + 47533083 47533772 L1PA8A 6298 + 5017 5712 53642 298 4 10 387 chain 48652 chrX 155270560 + 47535314 47535878 LTR19B 566 + 0 564 59990 118 1 0 332 0 1 113 chain 21884 chrX 155270560 + 47535889 47536258 THE1D 372 + 16 372 120695 4 1 0 31 9 0 23 3 0 6 7 6 80 32 34 19 6 5 148 chain 3376 chrX 155270560 + 47562075 47562115 LTR64 526 + 486 526 217551 40 chain 34837 chrX 155270560 + 47572088 47572534 LTR19B 566 + 9 440 76423 285 24 7 81 0 2 56 chain 208427 chrX 155270560 + 47572537 47575008 L1PA8 5853 + 3382 5853 18612 320 0 2 378 0 1 745 1 0 182 2 0 74 0 2 124 0 2 86 0 1 309 2 0 12 0 1 57 2 1 9 1 0 52 2 1 19 1 0 93 chain 38255 chrX 155270560 + 47597475 47597890 L1PA4 6152 - 6 421 71770 415 chain 19158 chrX 155270560 + 47597890 47598095 L1P1 4361 + 1663 1868 129650 205 chain 41253 chrX 155270560 + 47598325 47598796 L1PA7 6471 + 5999 6470 67592 471 chain 3467 chrX 155270560 + 47610524 47610563 MER41D 557 + 395 434 215861 39 chain 29086 chrX 155270560 + 47623047 47623435 L1P4 1494 + 531 921 88607 18 6 6 48 0 3 178 1 0 137 chain 4060 chrX 155270560 + 47627227 47627324 L1PA16 3655 - 36 116 206484 14 29 15 12 3 0 39 chain 55824 chrX 155270560 + 47628858 47629673 L1PA14 3548 + 901 3478 55234 202 0 1 283 1 0 7 0 1 13 4 1782 29 1 0 67 4 5 40 1 0 12 5 1 25 12 10 14 1 0 5 1 0 17 1 0 40 6 0 10 1 0 13 chain 6161 chrX 155270560 + 47634369 47634450 L1MA4 2864 + 2504 2587 183872 15 0 2 66 chain 34877 chrX 155270560 + 47639024 47639515 MER1A 529 - 0 493 76368 64 5 7 55 5 0 55 0 6 246 17 16 44 chain 555130 chrX 155270560 + 47643070 47649096 L1PA2 6032 - 1 6030 812 1969 0 3 4057 chain 3234 chrX 155270560 + 47662507 47662544 MER41B 635 - 87 124 220362 37 chain 22317 chrX 155270560 + 47668214 47668580 THE1D 372 - 0 372 118845 30 1 0 5 2 1 45 8 10 42 0 6 24 32 41 113 9 0 55 chain 32827 chrX 155270560 + 47668580 47669016 MER41B 635 - 199 635 79495 307 13 14 11 2 1 103 chain 45908 chrX 155270560 + 47670122 47670887 MER41-int 2638 - 1829 2552 62127 4 1 0 73 6 8 45 1 0 70 0 1 6 4 6 22 1 3 112 1 0 6 8 0 162 5 1 35 4 0 7 1 0 19 3 1 14 4 1 29 31 16 49 24 15 18 chain 22226 chrX 155270560 + 47684938 47685317 THE1D 372 - 0 372 119230 143 7 6 23 14 16 71 3 2 25 0 4 8 3 0 15 1 2 8 9 0 20 1 0 8 5 6 15 chain 28326 chrX 155270560 + 47691491 47691932 MLT2A2 560 - 0 560 91847 40 2 0 10 0 10 37 0 5 45 0 11 9 1 98 68 34 34 15 10 8 170 chain 6310 chrX 155270560 + 47702606 47702681 L1MB8 1703 - 309 384 182712 75 chain 5248 chrX 155270560 + 47708034 47708168 Tigger4a 237 - 0 236 192542 22 0 93 22 52 61 38 chain 65255 chrX 155270560 + 47713247 47714212 Tigger1 2417 - 1288 2228 50441 85 13 0 137 4 0 8 12 4 142 19 17 10 5 1 157 6 10 21 2 1 107 7 8 72 18 20 140 chain 28820 chrX 155270560 + 47740470 47740870 MER83 447 + 0 435 89799 51 0 1 91 30 64 228 chain 7777 chrX 155270560 + 47743237 47743353 MLT1F2 592 + 47 162 172437 23 12 11 81 chain 24947 chrX 155270560 + 47748996 47749414 MSTA 426 - 0 426 105068 11 11 7 90 10 18 56 54 57 158 3 4 25 chain 211078 chrX 155270560 + 47762307 47764622 L1PA4 6152 + 3837 6151 18425 1284 3 0 67 0 2 961 chain 22285 chrX 155270560 + 47765951 47766231 AluSx1 309 + 18 298 118973 173 1 0 21 1 2 84 chain 54723 chrX 155270560 + 47769011 47769611 L1PA3long 6157 - 0 602 55883 5 0 2 595 chain 38650 chrX 155270560 + 47769611 47770040 L1PA3long 6157 + 5121 5552 71226 73 0 2 356 chain 4584 chrX 155270560 + 47779253 47779331 L1MCc 1008 - 395 475 199808 49 11 13 18 chain 30697 chrX 155270560 + 47792031 47792363 L1PA4 6152 - 9 341 83043 332 chain 14248 chrX 155270560 + 47792400 47792626 MER30 238 - 0 237 143728 7 4 0 73 20 43 8 8 0 106 chain 38677 chrX 155270560 + 47795900 47796469 LTR19B 566 + 0 566 71183 115 1 0 41 41 19 46 0 1 74 3 0 5 20 0 134 0 41 12 3 4 74 chain 34547 chrX 155270560 + 47824373 47825644 MSTB-int 1649 + 0 505 76838 143 5 1 40 27 0 4 10 0 172 742 0 32 16 34 28 1 0 51 chain 3477 chrX 155270560 + 47825000 47825044 SVA_F 1814 + 1242 1289 215704 29 0 3 15 chain 3575 chrX 155270560 + 47844254 47844294 L1ME1 1623 + 1043 1083 214050 40 chain 71002 chrX 155270560 + 47845109 47845991 HERVL-int 5654 + 4773 5654 47927 830 1 0 51 chain 41029 chrX 155270560 + 47845995 47846530 MLT2A2 560 + 4 560 67861 195 0 3 5 11 8 5 0 1 109 0 9 67 0 11 143 chain 4457 chrX 155270560 + 47866945 47867028 MSTD 398 + 0 81 201265 19 22 20 42 chain 134330 chrX 155270560 + 47875723 47877252 SVA_B 1603 + 44 1603 27145 738 0 1 33 0 40 23 4 0 12 2 0 42 2 0 43 1 0 621 2 0 6 chain 33269 chrX 155270560 + 47897333 47897765 L1PA8 5853 + 5426 5853 78772 15 0 1 122 1 0 46 2 0 69 1 0 9 2 1 51 2 1 19 1 0 39 0 1 53 chain 126398 chrX 155270560 + 47898431 47899832 L1PA3long 6157 - 0 1407 28974 422 0 2 199 3 6 179 0 1 598 chain 3049 chrX 155270560 + 47902184 47902219 MER21C 908 - 763 798 224013 35 chain 3385 chrX 155270560 + 47906581 47906619 LTR14 556 - 516 554 217365 38 chain 25214 chrX 155270560 + 47912948 47913309 THE1C 375 - 0 375 103667 80 6 13 87 8 10 4 0 1 41 8 12 127 chain 13216 chrX 155270560 + 47936275 47936464 MLT1A 405 + 218 405 147406 69 10 9 41 1 0 68 chain 81576 chrX 155270560 + 47937117 47938173 MER11C 1089 + 0 1073 42939 246 0 9 62 0 4 65 1 0 146 47 46 91 0 1 20 0 4 5 1 0 38 0 1 324 0 1 10 chain 6517 chrX 155270560 + 47949868 47949950 LTR47A 437 + 304 386 181110 82 chain 22695 chrX 155270560 + 47962782 47963053 AluSp 311 + 11 279 117100 121 3 0 147 chain 157177 chrX 155270560 + 47974008 47975745 SVA_D 2077 + 24 2077 23702 6 6 0 808 0 223 31 0 1 210 0 98 676 chain 6735 chrX 155270560 + 47978452 47978612 Tigger1 2417 - 2163 2417 179437 75 64 158 21 chain 4457 chrX 155270560 + 47989814 47989897 MSTD 398 + 0 81 201264 19 22 20 42 chain 131709 chrX 155270560 + 47997983 47999513 SVA_B 1603 + 44 1603 27696 798 0 36 13 46 0 44 0 41 621 2 0 6 chain 17565 chrX 155270560 + 48012607 48012808 L1PA4 6152 + 5949 6150 134082 201 chain 7265 chrX 155270560 + 48013422 48013502 U6 107 - 27 107 175682 80 chain 70751 chrX 155270560 + 48032085 48032849 L1PA2 6032 - 1 765 48039 764 chain 20000 chrX 155270560 + 48046622 48046873 AluY 311 + 13 260 127143 115 4 0 132 chain 8943 chrX 155270560 + 48075912 48076014 L1PA4 6152 + 6049 6151 165904 102 chain 42506 chrX 155270560 + 48079371 48079886 MER9a1 513 + 2 513 66007 483 4 0 28 chain 130324 chrX 155270560 + 48081205 48082652 SVA_D 2077 + 16 2075 28015 526 0 40 144 0 37 115 0 535 662 chain 3885 chrX 155270560 + 48082886 48082929 5S 121 + 0 43 209090 43 chain 3443 chrX 155270560 + 48090202 48090239 MER4E1 777 + 663 700 216326 37 chain 81780 chrX 155270560 + 48091758 48092635 L1HS 6032 - 0 877 42856 877 chain 33031 chrX 155270560 + 48092635 48092985 L1HS 6032 + 4821 5171 78848 350 chain 71308 chrX 155270560 + 48092985 48093935 MER11C 1089 + 63 1052 47791 201 9 12 23 4 32 231 36 37 176 5 13 140 2 1 123 chain 96770 chrX 155270560 + 48118896 48119954 L1PA3long 6157 - 8 1066 37628 1058 chain 16228 chrX 155270560 + 48119955 48120146 L1P1 4361 + 4139 4328 137675 11 1 0 155 1 0 23 chain 6416 chrX 155270560 + 48125258 48125333 Tigger1 2417 - 2163 2238 181903 75 chain 37247 chrX 155270560 + 48202952 48203363 L1PA4 6152 + 5730 6141 73171 411 chain 4016 chrX 155270560 + 48231037 48231096 LOR1-int 1871 + 761 818 207140 14 1 0 23 1 0 20 chain 2883 chrX 155270560 + 48238218 48238253 L1MD2 1676 + 1388 1423 227296 35 chain 40655 chrX 155270560 + 48241944 48242389 L1PA3long 6157 + 5707 6152 68363 445 chain 139241 chrX 155270560 + 48255779 48257352 L1PA4 6152 - 13 1573 26259 128 6 0 14 7 0 1418 chain 40441 chrX 155270560 + 48271922 48272367 L1PA3long 6157 - 5 450 68675 445 chain 3989 chrX 155270560 + 48286176 48286348 MER31A 484 + 242 414 207553 19 113 113 40 chain 508236 chrX 155270560 + 48291859 48297706 L1PA5 6144 + 0 6143 6301 47 11 23 43 7 21 996 0 4 35 9 0 721 3 2 3345 0 278 617 3 1 10 chain 4575 chrX 155270560 + 48315474 48315641 MER58B 340 - 48 200 199947 32 29 39 16 62 37 28 chain 13270 chrX 155270560 + 48401368 48401556 MER44A 345 + 147 345 147212 21 1 16 63 2 0 54 3 0 44 chain 21979 chrX 155270560 + 48409735 48410012 AluSc 308 - 22 308 120319 12 1 9 216 7 8 41 chain 17365 chrX 155270560 + 48444257 48444572 L1MA9 1812 - 342 645 134610 13 1 0 36 1 0 7 11 8 18 1 0 29 36 33 117 2 0 19 2 1 22 chain 9982 chrX 155270560 + 48450236 48450379 L1PA8 5853 + 5712 5853 160666 28 2 1 19 6 5 88 chain 3403 chrX 155270560 + 48498488 48498536 L1M3 994 + 40 86 217012 21 1 0 14 1 0 11 chain 17892 chrX 155270560 + 48500000 48501045 Tigger3b 1229 - 341 650 133125 111 744 0 52 4 12 14 4 2 29 15 16 54 0 1 18 chain 5278 chrX 155270560 + 48500759 48500824 MER66C 541 + 370 435 192232 65 chain 64578 chrX 155270560 + 48512912 48513664 LTR17 781 + 0 773 50763 71 1 0 256 1 0 296 0 1 91 1 23 35 chain 3850 chrX 155270560 + 48516376 48516468 MLT1A0-int 1658 - 1565 1658 209649 23 13 15 25 2 0 5 5 6 19 chain 151474 chrX 155270560 + 48517222 48518949 SVA_D 2077 - 114 2019 24400 24 0 20 158 1 0 423 15 0 124 0 1 6 0 78 42 0 1 18 1 52 55 0 1 10 12 54 838 chain 12547 chrX 155270560 + 48538204 48538359 MER41B 635 + 478 635 150055 29 0 1 98 0 1 28 chain 41593 chrX 155270560 + 48538710 48539259 MER41B 635 + 0 549 67162 78 9 0 50 0 1 179 0 8 135 16 15 45 0 1 37 chain 25150 chrX 155270560 + 48576190 48576477 AluSc5 308 - 21 308 104001 287 chain 7592 chrX 155270560 + 48582866 48582960 U6 107 - 7 101 173599 94 chain 15585 chrX 155270560 + 48589816 48590018 MER30 238 + 0 219 139627 106 5 21 37 1 2 53 chain 5743 chrX 155270560 + 48616155 48616223 ERVL-B4-int 2334 + 323 391 187712 68 chain 2926 chrX 155270560 + 48631175 48631211 MIR 256 - 101 137 226568 36 chain 9816 chrX 155270560 + 48635379 48635485 U6 107 - 0 106 161514 106 chain 7545 chrX 155270560 + 48638719 48638823 L1MB7 1623 + 994 1097 173900 42 2 1 60 chain 24959 chrX 155270560 + 48710231 48710575 THE1B 368 - 0 368 105010 124 8 16 10 0 4 10 9 7 28 1 0 110 0 15 44 chain 37365 chrX 155270560 + 48712123 48712572 LTR2 463 + 0 463 73010 98 1 12 19 0 3 331 chain 435923 chrX 155270560 + 48714364 48719738 Harlequin-int 5206 + 135 5206 9169 9 11 0 149 5 0 7 1 0 183 2 0 199 1 0 61 296 0 101 0 1 213 6 0 1523 2 0 28 0 20 2577 chain 37455 chrX 155270560 + 48719738 48720196 LTR2 463 + 0 463 72884 127 0 3 16 1 2 120 0 1 194 chain 60006 chrX 155270560 + 48726827 48727508 L1PA4 6152 - 4726 5407 52775 681 chain 418954 chrX 155270560 + 48727508 48732537 L1PA4 6152 + 1431 6152 9559 384 0 2 6 2 0 26 323 0 285 0 2 1803 1 11 273 2 1 97 0 1 32 0 4 958 2 0 692 13 14 130 chain 21324 chrX 155270560 + 48733751 48734037 HSMAR2 1300 + 52 336 122782 161 0 1 40 2 0 40 1 0 42 chain 14102 chrX 155270560 + 48766427 48766590 AluSc5 308 + 10 171 144211 121 2 0 40 chain 5521 chrX 155270560 + 48816444 48816528 U6 107 - 5 91 189824 39 4 3 10 0 3 31 chain 4998 chrX 155270560 + 48863470 48863558 L1MC4 1079 + 324 407 195153 13 10 0 6 1 6 58 chain 175064 chrX 155270560 + 48865870 48867783 L1PA3long 6157 - 0 1917 21452 1799 0 4 114 chain 26258 chrX 155270560 + 48872707 48873002 AluSp 311 + 0 298 98982 91 0 3 204 chain 23652 chrX 155270560 + 48888318 48888599 AluSp 311 + 0 287 112296 30 0 5 97 1 0 131 0 2 22 chain 10821 chrX 155270560 + 48906746 48906936 MER1B 344 - 43 226 156901 15 11 19 47 4 0 18 16 5 79 chain 3835 chrX 155270560 + 48914491 48914551 MIR 256 - 141 199 209842 26 8 6 26 chain 4090 chrX 155270560 + 48943461 48943509 LTR23 429 - 358 406 206080 48 chain 26451 chrX 155270560 + 48959790 48960091 AluSp 311 - 10 311 98230 301 chain 3923 chrX 155270560 + 48965852 48965896 MLT1B 390 + 300 344 208520 44 chain 23316 chrX 155270560 + 48989461 48989746 AluSp 311 - 16 301 114123 285 chain 23243 chrX 155270560 + 48990530 48990805 AluSc 308 - 34 308 114472 143 1 0 131 chain 23697 chrX 155270560 + 48992951 48993260 AluY 311 + 6 311 112046 127 17 10 7 0 3 158 chain 4334 chrX 155270560 + 48995838 48995892 LTR42 492 + 357 411 202782 54 chain 9795 chrX 155270560 + 49000778 49000899 HERVE-int 4064 + 1118 1239 161620 121 chain 3603 chrX 155270560 + 49005050 49005097 LTR2C 499 - 117 161 213597 6 3 0 38 chain 16081 chrX 155270560 + 49011992 49012172 L1PA5 6144 + 5955 6135 138109 180 chain 24604 chrX 155270560 + 49027515 49027801 AluSp 311 - 24 311 106972 155 1 0 93 0 2 37 chain 23320 chrX 155270560 + 49079789 49080083 AluY 311 + 8 311 114088 115 0 6 102 7 10 70 chain 25730 chrX 155270560 + 49111406 49111707 AluSg7 307 - 6 307 101163 301 chain 331813 chrX 155270560 + 49152427 49156946 L1P3 4156 - 131 4154 12136 785 0 3 425 487 0 129 6 0 54 19 1 38 1 0 72 0 2 133 0 3 279 7 9 337 0 9 655 1 0 48 0 2 5 2 0 715 2 1 59 36 35 224 chain 37468 chrX 155270560 + 49164258 49164734 LTR15 485 + 0 478 72862 107 0 1 17 4 0 25 0 2 129 0 4 42 0 1 109 1 0 5 2 0 14 0 1 21 chain 34492 chrX 155270560 + 49172531 49173003 LTR15 485 + 0 478 76919 107 0 1 17 4 0 24 0 2 23 0 2 98 1 5 44 0 1 16 5 6 60 0 1 30 1 0 5 2 0 16 0 1 19 chain 48158 chrX 155270560 + 49175053 49175587 L1PA2 6032 - 10 544 60355 534 chain 47580 chrX 155270560 + 49184600 49185130 L1PA2 6032 - 14 544 60780 530 chain 46975 chrX 155270560 + 49194105 49194633 L1PA2 6032 - 10 544 61227 10 0 6 518 chain 47189 chrX 155270560 + 49203657 49204187 L1PA2 6032 - 14 544 61054 530 chain 48075 chrX 155270560 + 49213150 49213684 L1PA2 6032 - 10 544 60421 534 chain 47944 chrX 155270560 + 49222673 49223207 L1PA2 6032 - 10 544 60529 534 chain 48075 chrX 155270560 + 49232211 49232745 L1PA2 6032 - 10 544 60420 534 chain 48075 chrX 155270560 + 49241746 49242280 L1PA2 6032 - 10 544 60419 534 chain 48007 chrX 155270560 + 49293321 49293852 L1PA2 6032 - 13 544 60483 531 chain 48007 chrX 155270560 + 49302877 49303408 L1PA2 6032 - 13 544 60482 531 chain 47885 chrX 155270560 + 49312433 49312964 L1PA2 6032 - 13 544 60568 531 chain 48007 chrX 155270560 + 49321985 49322516 L1PA2 6032 - 13 544 60481 531 chain 47885 chrX 155270560 + 49331544 49332075 L1PA2 6032 - 13 544 60567 531 chain 48007 chrX 155270560 + 49341093 49341624 L1PA2 6032 - 13 544 60480 531 chain 48007 chrX 155270560 + 49350640 49351171 L1PA2 6032 - 13 544 60479 531 chain 47876 chrX 155270560 + 49360163 49360694 L1PA2 6032 - 13 544 60571 531 chain 550411 chrX 155270560 + 49384665 49390808 L1PA4 6152 - 1 6152 1391 855 1 2 658 0 1 2640 0 8 750 0 1 944 3 0 292 chain 123696 chrX 155270560 + 49392903 49394357 L1PA7 6471 - 2 1458 29814 10 2 0 693 0 5 140 1 0 608 chain 16438 chrX 155270560 + 49395961 49396169 L1PA8 5853 - 2 206 137098 90 2 1 19 2 1 50 1 0 9 1 0 34 chain 36732 chrX 155270560 + 49415716 49416121 L1PA2 6032 - 0 405 73911 405 chain 16622 chrX 155270560 + 49422347 49422527 L1PA3long 6157 - 5 185 136607 180 chain 15909 chrX 155270560 + 49423125 49423362 LTR44 473 - 9 249 138631 88 2 0 5 7 11 55 11 12 69 chain 26305 chrX 155270560 + 49437846 49438146 AluSp 311 - 1 301 98810 300 chain 4929 chrX 155270560 + 49447585 49447686 L1MD 993 - 160 256 195943 50 32 27 19 chain 10814 chrX 155270560 + 49464411 49464904 L1MB7 1623 - 137 566 156919 6 4 0 15 128 102 19 1 0 7 1 0 14 39 38 12 16 12 13 40 25 14 5 0 7 1 0 5 5 0 9 2 0 37 20 21 73 chain 16654 chrX 155270560 + 49465904 49466110 Tigger3c 601 - 54 258 136522 72 2 0 132 chain 4170 chrX 155270560 + 49468164 49468264 MIRb 242 - 34 136 204971 40 36 38 24 chain 14860 chrX 155270560 + 49468311 49468519 MER30 238 - 3 238 141755 17 0 11 8 3 0 70 3 22 107 chain 3097 chrX 155270560 + 49473683 49473718 MER34C_ 573 - 0 35 222990 35 chain 56656 chrX 155270560 + 49473726 49474512 MER4E1 777 - 8 777 54748 91 1 2 126 2 0 10 46 0 67 8 0 21 5 49 71 0 1 306 7 0 25 chain 4173 chrX 155270560 + 49475968 49476048 LTR37A 408 - 8 86 204939 11 1 0 26 8 7 34 chain 6219 chrX 155270560 + 49476159 49476270 MER41B 635 - 8 124 183421 44 29 34 38 chain 23298 chrX 155270560 + 49479539 49479873 L1M1 2793 - 1223 1547 114209 179 4 0 27 5 3 22 0 1 13 0 2 50 3 0 4 4 0 23 chain 53517 chrX 155270560 + 49480899 49481583 LTR17 781 + 0 728 56669 327 1 0 59 0 1 85 4 1 47 2 1 10 1 0 25 0 49 123 chain 43225 chrX 155270560 + 49481939 49482587 L1PB2 3958 + 3211 3838 65140 23 0 2 73 2 0 53 28 17 60 2 0 12 7 0 94 1 0 32 6 8 32 1 0 11 3 4 49 2 1 93 1 0 63 chain 17638 chrX 155270560 + 49484762 49484979 MER4E1 777 - 383 604 133887 198 0 2 13 0 2 6 chain 14589 chrX 155270560 + 49484980 49485152 MER4E1 777 - 604 777 142632 155 0 1 17 chain 3112 chrX 155270560 + 49492116 49492151 MER52D 1964 + 1224 1259 222706 35 chain 42237 chrX 155270560 + 49492893 49493434 L1PB 1623 - 506 1051 66351 152 7 8 373 0 3 9 chain 54052 chrX 155270560 + 49515151 49515922 MER4E 760 - 0 760 56324 230 3 0 67 7 12 5 1 0 83 0 2 185 69 72 18 2 0 65 15 0 21 chain 3654 chrX 155270560 + 49524429 49524478 MIR 256 - 111 157 212713 6 3 0 40 chain 97253 chrX 155270560 + 49536891 49538971 L1M1 2793 - 450 2397 37496 55 23 27 35 1 8 76 5 6 28 11 6 32 18 17 22 16 17 50 0 3 119 18 17 43 1 0 253 0 1 134 1 4 27 0 1 50 101 83 49 1 0 119 0 2 21 1 11 24 1 0 101 1 0 6 5 3 54 1 0 8 2 0 25 16 45 17 68 51 17 121 77 9 31 0 11 1 0 9 1 0 7 3 0 9 2 0 11 11 9 12 25 19 11 113 64 6 1 0 8 3 0 13 1 0 5 chain 90382 chrX 155270560 + 49543230 49544232 L1PA3long 6157 - 1823 2828 39448 354 1 2 93 0 2 554 chain 165939 chrX 155270560 + 49544232 49546070 L1PA3long 6157 + 4304 6142 22521 1838 chain 5042 chrX 155270560 + 49549811 49549869 MER77B 728 + 306 364 194718 58 chain 55545 chrX 155270560 + 49550521 49551565 L1PA8A 6298 - 344 1052 55390 263 352 14 186 0 3 125 1 0 117 chain 25344 chrX 155270560 + 49555104 49555453 THE1B 368 - 11 368 102988 38 5 13 109 2 0 24 2 1 127 0 5 27 2 0 13 chain 4491 chrX 155270560 + 49565713 49565780 L1MA8 2339 + 2198 2262 200889 35 2 0 23 1 0 6 chain 29474 chrX 155270560 + 49573351 49574616 L1PA15 4387 - 31 494 86738 27 5 0 13 2 0 46 13 11 42 1 0 10 4 0 15 8 7 55 1 0 26 1 0 99 0 1 14 786 2 56 1 0 7 1 0 32 chain 91393 chrX 155270560 + 49578576 49579571 L1PA3long 6157 - 7 1003 39166 556 0 1 439 chain 45440 chrX 155270560 + 49579571 49580070 L1PA3long 6157 + 4650 5149 61876 499 chain 32722 chrX 155270560 + 49587111 49587480 L1PA4 6152 - 11 380 79652 369 chain 27594 chrX 155270560 + 49592682 49593099 MER31A 484 - 74 484 94362 201 6 5 39 17 0 11 1 18 40 1 0 47 3 0 19 2 0 30 chain 56944 chrX 155270560 + 49622165 49622803 L1PA4 6152 - 1 631 54564 95 7 0 158 1 0 377 chain 21317 chrX 155270560 + 49639411 49639751 MER1B 344 + 0 338 122816 16 9 29 228 5 0 6 26 10 5 0 2 26 3 0 16 chain 23015 chrX 155270560 + 49661514 49661900 THE1D 372 + 0 372 115556 45 28 0 27 0 10 106 23 21 13 0 1 15 5 11 83 6 5 35 chain 109421 chrX 155270560 + 49661916 49663394 THE1D-int 1627 + 12 1627 34337 16 0 1 352 7 0 339 1 0 21 38 45 64 10 95 222 14 53 24 2 0 108 0 7 123 1 6 103 0 3 33 chain 55961 chrX 155270560 + 49668174 49668824 L1PA6 6164 - 2 646 55145 6 6 0 638 chain 20978 chrX 155270560 + 49692266 49692584 L1MA4 2864 + 2344 2663 123997 26 6 8 96 26 25 21 0 1 122 1 0 20 chain 2970 chrX 155270560 + 49695723 49695760 MER5B 177 - 135 172 225670 37 chain 142238 chrX 155270560 + 49702799 49704391 L1PA5 6144 + 4533 6126 25769 481 1 0 277 0 3 701 1 0 131 chain 218410 chrX 155270560 + 49707022 49709472 L1PA5 6144 - 6 2458 17975 149 1 0 695 0 3 729 1 0 630 1 2 244 chain 5630 chrX 155270560 + 49709975 49710041 U6 107 - 29 95 188760 66 chain 24185 chrX 155270560 + 49711427 49711731 AluSp 311 - 1 311 109296 167 4 10 133 chain 82726 chrX 155270560 + 49731227 49732107 L1HS 6032 - 0 880 42374 880 chain 137654 chrX 155270560 + 49732107 49733577 L1HS 6032 + 3696 5165 26532 754 1 0 715 chain 14611 chrX 155270560 + 49737977 49738141 L1PA4 6152 - 1 172 142549 116 0 7 48 chain 9704 chrX 155270560 + 49739747 49739870 MER85 139 - 17 139 162063 12 2 1 109 chain 5033 chrX 155270560 + 49740590 49740669 MER20 218 + 93 171 194793 26 11 10 42 chain 63291 chrX 155270560 + 49755352 49756260 L1PB1 5432 - 153 1053 51324 38 5 4 11 7 6 20 0 1 30 19 13 12 1 0 6 1 0 24 3 0 6 8 5 82 0 1 240 11 12 44 1 4 90 4 1 8 0 5 237 chain 23073 chrX 155270560 + 49766091 49766344 L1PA5 6144 - 13 266 115284 253 chain 566682 chrX 155270560 + 49784085 49790114 L1HS 6032 - 0 6032 110 1741 0 4 1894 1 0 2393 chain 36953 chrX 155270560 + 49793780 49794186 L1PA4 6152 - 18 424 73579 406 chain 34395 chrX 155270560 + 49794186 49794575 L1PA4 6152 + 5334 5722 77065 32 2 0 24 0 1 331 chain 127621 chrX 155270560 + 49796332 49797723 L1PA3long 6157 - 2 1393 28665 1391 chain 59845 chrX 155270560 + 49797723 49798375 L1PA3long 6157 + 4091 4743 52854 652 chain 20468 chrX 155270560 + 49812626 49812944 MER1B 344 - 0 303 125708 28 6 0 25 31 27 44 4 0 54 1 0 125 chain 558142 chrX 155270560 + 49824800 49830832 L1PA2 6032 + 0 6032 487 6032 chain 7723 chrX 155270560 + 49834859 49834942 L1PA5 6144 - 4 87 172762 83 chain 5210 chrX 155270560 + 49838803 49838870 MADE1 96 + 3 96 192916 20 0 26 47 chain 45023 chrX 155270560 + 49873709 49874276 MER4B 649 + 0 575 63029 192 2 0 173 1 10 128 0 1 71 chain 25000 chrX 155270560 + 49875624 49875953 MER51B 395 - 10 394 104790 140 6 5 95 0 56 88 chain 21628 chrX 155270560 + 49881926 49882197 L1PA16 3655 - 76 349 121665 160 1 3 110 chain 62002 chrX 155270560 + 49895135 49895820 L1PA4 6152 + 5454 6139 51900 685 chain 20092 chrX 155270560 + 49913732 49913951 L1PA5 6144 + 5923 6142 126850 219 chain 29841 chrX 155270560 + 49914499 49914948 MLT2A1 477 + 0 477 85314 142 0 1 25 1 5 26 0 1 124 1 0 33 12 16 9 4 0 10 24 47 38 chain 11031 chrX 155270560 + 49916525 49916647 L1PA4 6152 - 6 128 156088 122 chain 5071 chrX 155270560 + 49916679 49916744 MLT1E3 631 + 565 631 194416 59 0 1 6 chain 4541 chrX 155270560 + 49923244 49923296 MLT1B 390 - 24 76 200323 52 chain 145768 chrX 155270560 + 49926753 49928541 LTR12C 1709 - 0 1709 25213 481 0 4 107 2 0 6 1 0 274 1 0 9 41 0 125 41 0 125 2 1 9 1 3 276 3 0 6 13 17 174 0 1 91 chain 3615 chrX 155270560 + 49927634 49927675 LTR12C 1709 - 640 681 181056 41 chain 3753 chrX 155270560 + 49927800 49927841 LTR12C 1709 - 687 728 138843 41 chain 5873 chrX 155270560 + 49928718 49928785 MER21A 919 - 850 917 186444 67 chain 51574 chrX 155270560 + 49939589 49940154 L1PA2 6032 - 727 1292 57905 565 chain 63900 chrX 155270560 + 49940154 49940852 L1PA2 6032 + 5334 6031 51053 678 1 0 19 chain 5019 chrX 155270560 + 49956399 49956455 MER96 175 + 0 56 194938 56 chain 3125 chrX 155270560 + 49968922 49968956 MER5A 189 - 13 47 222446 34 chain 7168 chrX 155270560 + 49972602 49972694 L1MB8 1703 - 115 207 176277 92 chain 3541 chrX 155270560 + 49973929 49973977 L1MA10 1535 - 136 186 214691 7 0 2 41 chain 37956 chrX 155270560 + 50030762 50031273 MER1A 529 + 3 529 72200 77 13 17 303 0 8 43 12 15 63 chain 548690 chrX 155270560 + 50039138 50045260 L1PA4 6152 - 6 6130 1618 99 0 3 1415 1 0 3189 0 1 194 2 1 1222 chain 116207 chrX 155270560 + 50047355 50048653 L1PA4 6152 + 4842 6139 32372 316 1 0 981 chain 3499 chrX 155270560 + 50048663 50048705 L1MB7 1623 - 1238 1280 215364 42 chain 133673 chrX 155270560 + 50065064 50066567 L1PA4 6152 + 4637 6143 27284 6 3 0 22 1 0 633 0 4 620 0 2 114 0 1 104 chain 28438 chrX 155270560 + 50072998 50073456 LTR2 463 - 0 463 91428 24 1 0 28 1 0 26 14 15 249 62 67 4 0 1 49 chain 522275 chrX 155270560 + 50073464 50080497 HERVE_a-int 7009 - 1 6874 4929 12 1 0 5 3 1 20 36 28 17 2 0 34 2 0 24 3 12 8 1 0 30 1 0 27 3 1 54 7 4 31 2 1 55 9 7 24 2 1 4 1 0 47 1 0 19 3 2 36 2 1 7 2 0 4 1 0 17 1 0 10 5 4 28 1 0 17 0 2 23 1 0 42 2 0 96 2 0 81 1 0 13 1 0 18 2 0 57 1 0 3 1 0 15 1 0 102 2 0 258 1 0 11 2 1 87 1 0 23 1 0 41 2 0 7 1 0 74 1 0 9 1 0 29 1 0 66 0 1 44 10 1 374 0 3 51 2 19 282 3 1 546 19 16 454 6 5 500 1 0 85 1 0 150 7 6 80 5 6 163 1 0 152 8 14 4 1 0 36 1 0 14 1 0 144 1 0 8 7 5 17 13 8 29 6 4 25 2 1 95 1 0 10 2 1 24 1 0 16 1 0 24 1 0 44 2 1 33 1 0 8 1 0 39 1 0 57 1 0 40 1 0 39 1 0 22 1 0 4 2 1 10 1 0 18 1 0 10 2 1 20 1 0 19 1 0 115 1 0 16 1 0 23 5 4 52 3 1 57 1 0 5 1 0 5 1 0 10 1 0 12 1 0 21 2 1 16 1 0 3 1 0 21 1 0 4 3 0 10 8 6 15 1 0 23 1 0 50 1 0 14 2 0 40 4 3 10 0 4 15 3 2 72 1 0 8 1 0 26 1 0 66 2 1 26 6 4 49 1 0 13 1 0 33 2 1 15 1 0 12 1 0 99 1 0 32 0 2 32 1 2 18 2 1 21 1 0 44 1 0 25 4 2 34 28 0 18 13 10 6 1 0 7 20 14 14 1 0 4 13 11 4 1 0 22 18 14 68 3 1 29 3 0 21 chain 17276 chrX 155270560 + 50086008 50086415 Tigger3b 1229 + 303 568 134846 13 2 5 7 4 0 33 0 1 37 1 4 133 147 2 30 chain 114379 chrX 155270560 + 50098302 50099812 L1PB2 3958 - 120 1643 32974 63 1 0 22 2 0 63 10 9 64 1 0 77 6 23 26 5 6 34 4 0 12 2 0 68 1 0 8 0 3 36 1 0 15 2 0 155 0 1 111 0 9 58 15 17 34 5 4 438 4 0 167 chain 23924 chrX 155270560 + 50172418 50172684 AluY 311 + 17 280 110782 116 3 0 147 chain 4904 chrX 155270560 + 50174825 50174907 MIRb 242 + 24 118 196236 14 9 23 6 2 0 51 chain 55680 chrX 155270560 + 50188397 50189327 L1PREC2 3366 - 296 1182 55320 7 1 0 4 1 0 11 2 0 38 6 4 29 31 17 8 3 0 30 7 5 12 3 0 5 43 33 14 9 5 43 1 0 53 2 0 13 18 18 380 0 1 4 1 0 53 6 7 92 chain 3242 chrX 155270560 + 50198909 50199033 MER91B 187 - 57 171 220200 33 71 61 20 chain 7740 chrX 155270560 + 50223674 50223863 L1PA16 3655 - 36 204 172657 21 82 61 86 chain 272647 chrX 155270560 + 50231621 50234690 L1PA5 6144 - 0 3072 15039 86 4 0 68 0 1 646 0 1 864 0 2 524 0 1 744 1 2 41 0 1 91 chain 14856 chrX 155270560 + 50254980 50255176 L1PA16 3655 - 77 269 141769 57 1 0 34 3 0 101 chain 3718 chrX 155270560 + 50257423 50257482 MER52C 1267 - 283 393 211664 6 4 0 25 0 55 24 chain 26494 chrX 155270560 + 50265297 50265711 MSTA 426 + 2 424 98066 86 20 25 14 30 36 47 2 0 99 1 0 115 chain 19614 chrX 155270560 + 50269393 50269614 L1PA5 6144 + 5893 6114 128355 221 chain 405841 chrX 155270560 + 50301345 50306830 L1PB1 5432 + 58 5391 9916 45 23 25 20 2 15 78 0 7 5 1 0 506 1 0 636 1 0 6 3 0 4 9 0 98 131 0 258 0 2 106 0 1 56 5 9 397 0 1 22 1 0 139 7 0 268 0 1 80 1 0 73 1 0 27 14 11 709 0 6 52 1 3 194 0 1 43 0 1 663 3 0 102 0 4 101 0 1 269 5 0 12 7 0 10 10 9 13 16 11 9 2 0 62 9 8 43 1 0 16 3 0 7 14 5 19 25 23 20 1 0 5 0 1 15 chain 7755 chrX 155270560 + 50313976 50314064 L1P4 1494 + 1071 1158 172570 35 1 0 52 chain 34120 chrX 155270560 + 50314495 50314889 L1PA7 6471 + 6076 6470 77449 394 chain 24641 chrX 155270560 + 50354136 50354409 AluYk4 311 - 0 271 106778 185 2 0 86 chain 3371 chrX 155270560 + 50388120 50388157 MER5A1 166 - 34 71 217659 37 chain 4231 chrX 155270560 + 50394480 50394577 MER5A 189 + 32 130 204151 27 39 40 31 chain 199240 chrX 155270560 + 50394596 50396931 L1PA7 6471 - 13 2369 19265 141 3 2 6 0 1 610 0 5 65 0 6 310 1 6 321 1 0 216 0 3 462 0 2 44 0 1 155 chain 23386 chrX 155270560 + 50398011 50398320 L1PA16 3655 - 130 432 113731 14 5 0 219 3 1 68 chain 71829 chrX 155270560 + 50413109 50413949 L1PA7 6471 - 3 839 47547 7 4 0 829 chain 35230 chrX 155270560 + 50425783 50426235 MLT2A1 477 + 0 477 75884 142 0 1 26 1 5 211 4 0 8 10 34 50 chain 4505 chrX 155270560 + 50431043 50431189 MER58B 340 - 38 200 200728 17 77 93 52 chain 18340 chrX 155270560 + 50431266 50431619 L1MA5A 2387 + 1919 2254 131957 18 3 4 19 39 44 29 1 0 65 0 9 48 2 0 64 3 0 9 31 4 22 chain 23326 chrX 155270560 + 50446486 50446852 THE1D 372 + 0 372 114054 162 0 2 5 46 55 50 4 0 66 1 0 32 chain 6643 chrX 155270560 + 50452797 50452948 MER5A 189 + 0 163 180142 66 47 56 19 1 4 18 chain 43459 chrX 155270560 + 50464189 50464737 MER41A 554 - 0 554 64860 79 1 6 40 1 2 427 chain 38686 chrX 155270560 + 50466679 50467200 HERVH-int 3825 + 2101 2648 71167 268 36 49 160 1 14 56 chain 22996 chrX 155270560 + 50468452 50468810 THE1D 372 + 0 372 115641 145 65 79 148 chain 114715 chrX 155270560 + 50468825 50470416 THE1D-int 1627 + 14 1616 32876 24 1 0 72 0 1 69 9 5 40 0 1 70 0 2 35 1 3 80 6 7 248 5 6 22 0 3 136 64 67 70 10 11 156 2 1 103 4 6 222 3 4 4 1 0 134 chain 245325 chrX 155270560 + 50480603 50483329 L1PA4 6152 + 3413 6141 16497 1216 1 0 1417 0 3 92 chain 4706 chrX 155270560 + 50499701 50499761 L1MB7 1623 - 445 505 198423 60 chain 18057 chrX 155270560 + 50531419 50531625 AluYc3 301 + 83 289 132708 206 chain 10572 chrX 155270560 + 50561130 50561347 L1MB1 2102 - 39 242 157949 25 1 0 23 2 0 6 5 3 62 3 1 27 2 0 17 18 16 10 3 0 13 chain 24297 chrX 155270560 + 50561832 50562594 Tigger3b 1229 - 1 1168 108671 286 429 834 47 chain 42899 chrX 155270560 + 50563677 50564793 L1MA4 2864 + 1892 2643 65539 113 71 33 25 0 3 29 1 0 22 1 0 45 5 0 28 10 23 22 2 0 99 3 0 7 28 29 127 359 25 102 4 6 13 chain 10022 chrX 155270560 + 50573349 50573470 MER85 139 + 8 139 160472 82 0 10 39 chain 4750 chrX 155270560 + 50575743 50575802 MLT1A0 366 + 301 361 197920 37 0 1 22 chain 13020 chrX 155270560 + 50583892 50584078 MER30 238 + 38 237 148177 57 5 26 6 5 0 71 3 0 39 chain 49635 chrX 155270560 + 50585441 50586118 LTR8 732 - 13 732 59288 176 19 16 179 0 27 78 0 2 79 0 6 117 6 15 4 0 1 19 chain 8725 chrX 155270560 + 50590113 50590682 HUERS-P1-int 2401 - 277 688 61921 45 52 41 25 1 0 3 3 0 8 20 1 12 5 0 15 1 0 35 1 0 14 260 150 18 3 2 15 6 4 12 3 0 7 1 0 4 chain 56130 chrX 155270560 + 50590889 50591512 L1PA5 6144 + 5516 6140 55048 478 1 2 144 chain 17358 chrX 155270560 + 50591989 50593121 HUERS-P1-int 2401 - 881 2190 61921 27 0 1 13 233 188 16 14 7 28 2 0 55 1 0 26 3 0 24 1 0 12 3 1 97 2 0 8 1 0 9 1 0 92 0 1 33 5 347 5 1 0 22 2 0 5 26 7 15 2 0 8 1 0 37 1 0 8 3 0 28 144 90 12 6 0 6 3 1 13 4 1 34 6 1 8 1 0 17 2 0 6 chain 43744 chrX 155270560 + 50593773 50594499 LTR8 732 - 0 732 64511 118 31 7 13 21 28 28 13 11 128 5 0 51 19 46 60 0 2 40 0 3 35 0 6 11 17 0 103 7 0 7 0 16 19 chain 3618 chrX 155270560 + 50624208 50624265 MLT1A-int 1186 - 518 571 213385 21 8 4 28 chain 70533 chrX 155270560 + 50630984 50631994 Tigger1 2417 - 836 1833 48144 125 1 3 42 1 2 52 0 1 58 2 0 38 1 0 220 6 9 41 0 1 4 22 21 168 1 0 39 4 5 42 23 6 120 chain 18151 chrX 155270560 + 50636564 50636859 L1MA1 4479 + 3888 4172 132455 58 1 0 6 8 5 121 1 0 10 0 1 16 2 0 37 1 0 5 13 9 16 chain 6785 chrX 155270560 + 50649574 50649722 MIR 256 - 24 153 179068 64 51 32 33 chain 4246 chrX 155270560 + 50651461 50651565 Tigger2b_Pri 1066 + 970 1066 203936 24 0 2 6 41 31 33 chain 58573 chrX 155270560 + 50667604 50668269 L1PA7 6471 - 2 666 53659 332 1 0 332 chain 66781 chrX 155270560 + 50700163 50700941 L1PA6 6164 + 5384 6162 49741 618 15 15 145 chain 51864 chrX 155270560 + 50711897 50712549 PABL_A 660 - 10 660 57707 371 0 1 54 2 0 97 1 0 64 4 0 8 6 10 45 chain 38350 chrX 155270560 + 50721088 50721587 LTR10D 510 - 0 510 71648 91 2 0 148 2 0 124 0 1 43 4 12 12 0 6 73 chain 261325 chrX 155270560 + 50723002 50726980 MER61-int 3695 + 1 3695 15629 29 4 0 20 1 0 148 39 0 74 1 0 42 21 18 27 10 14 25 2 1 12 34 20 111 0 4 92 0 96 112 0 5 56 14 19 77 2 1 127 0 2 4 1 0 108 0 1 53 26 0 142 2 0 80 1 0 17 7 5 50 0 1 17 0 1 7 0 5 321 0 2 23 317 0 161 1 0 36 2 0 98 0 1 154 0 1 194 5 0 93 6 5 52 1 0 66 0 1 14 63 53 211 0 1 4 1 0 30 0 1 4 3 1 30 1 3 127 1 0 4 0 20 11 2 0 211 6 7 41 2 3 87 chain 29308 chrX 155270560 + 50741992 50742307 AluYb8 318 + 0 317 87527 272 1 3 42 chain 22090 chrX 155270560 + 50749977 50750272 L1PA8 5853 - 0 289 119836 93 1 0 19 2 1 54 1 0 7 1 0 71 3 1 43 chain 148875 chrX 155270560 + 50751895 50755633 L1PA7 6471 - 4 3766 6679 10 3 0 324 0 2 410 0 3 8 0 1 92 0 3 188 0 85 87 2 0 68 0 1 115 36 0 812 0 1 406 1 2 111 0 1 49 46 12 232 0 1 738 chain 542388 chrX 155270560 + 50755668 50761797 L1PA4 6152 - 9 6145 2449 835 0 4 1200 0 1 221 0 1 677 0 1 3196 chain 107574 chrX 155270560 + 50761819 50764520 L1PA7 6471 - 3766 6467 6679 72 1 2 93 17 18 219 12 0 419 7 8 464 0 3 82 0 4 58 6 4 57 7 0 323 0 1 27 0 1 79 3 13 241 24 21 82 5 7 236 17 11 6 0 6 144 chain 13947 chrX 155270560 + 50779661 50779828 L1PA16 3655 - 190 357 144766 167 chain 16352 chrX 155270560 + 50791625 50791817 MER4E1 777 - 0 192 137336 192 chain 28104 chrX 155270560 + 50802313 50802619 AluYf4 310 - 4 310 92635 306 chain 213222 chrX 155270560 + 50853638 50855961 L1PA3long 6157 - 8 2332 18281 146 0 1 2177 chain 432019 chrX 155270560 + 50855962 50860710 L1PA3long 6157 + 1408 6157 9268 3311 0 1 1437 chain 133891 chrX 155270560 + 50861418 50863334 SVA_B 1603 - 0 1603 27240 53 0 1 324 1 0 210 0 1 52 16 17 62 90 0 21 1 0 10 1 0 24 175 0 84 80 0 589 0 6 101 0 26 22 chain 2442 chrX 155270560 + 50862140 50862166 SVA_B 1603 - 678 704 233800 26 chain 241308 chrX 155270560 + 50867769 50870692 L1P3 4156 + 3 2938 16704 234 30 29 54 1 0 74 5 8 236 0 2 587 0 8 1389 18 19 295 chain 45076 chrX 155270560 + 50913743 50914270 L1PA7 6471 + 5935 6463 62964 418 4 5 105 chain 22890 chrX 155270560 + 50917690 50917984 L1PA8 5853 + 5564 5853 116142 43 3 1 73 1 0 59 2 1 19 1 0 93 chain 81268 chrX 155270560 + 50920127 50921091 LTR13A 966 - 0 966 43059 83 1 0 405 1 0 94 1 0 256 0 1 47 0 4 76 chain 2795 chrX 155270560 + 50924547 50924595 MLT1C-int 1263 - 1217 1263 228812 29 1 0 5 2 1 11 chain 116748 chrX 155270560 + 50937804 50939324 THE1B-int 1605 - 1 1559 32211 8 0 1 243 0 1 669 1 0 9 0 1 81 14 17 117 0 25 73 27 14 37 0 21 241 chain 4107 chrX 155270560 + 50939449 50939497 THE1B 368 - 321 368 205824 6 1 0 41 chain 88946 chrX 155270560 + 50945112 50946078 L1PA3long 6157 - 1172 2138 40026 966 chain 106287 chrX 155270560 + 50946079 50947241 L1PA3long 6157 + 4994 6156 35186 1162 chain 105697 chrX 155270560 + 50949038 50950596 THE1B-int 1605 + 0 1599 35330 13 4 5 94 51 0 161 0 6 118 0 64 11 3 9 180 72 73 21 7 1 25 1 18 497 18 15 92 11 12 86 0 5 93 chain 125052 chrX 155270560 + 50955577 50956954 L1PA4 6152 + 4769 6146 29378 1377 chain 105457 chrX 155270560 + 50961220 50962715 L1PA14 3548 - 522 2019 35382 18 11 7 48 9 7 12 2 0 14 1 0 139 0 2 91 1 0 126 7 1 25 2 1 350 0 1 70 0 1 99 15 16 21 8 6 27 1 0 59 0 1 89 0 1 84 2 17 164 chain 32359 chrX 155270560 + 50963411 50963794 L1PA7 6471 + 6087 6468 80256 220 1 3 151 4 0 7 chain 42899 chrX 155270560 + 50970132 50970612 L1PA4 6152 - 801 1281 65540 480 chain 72997 chrX 155270560 + 50970613 50971405 L1PA4 6152 + 5353 6145 47028 792 chain 255238 chrX 155270560 + 50989298 50992115 L1PA3long 6157 + 3336 6152 15972 1971 1 0 845 chain 68599 chrX 155270560 + 50995270 50996046 L1PA3long 6157 - 15 789 48986 324 2 1 445 1 0 4 chain 188505 chrX 155270560 + 51002152 51004255 L1PA3long 6157 - 0 2090 20195 69 7 1 93 7 0 1927 chain 544519 chrX 155270560 + 51004954 51011021 L1PA3long 6157 + 71 6157 2141 373 0 20 431 8 0 68 0 1 225 0 3 1534 4 2 2582 0 4 256 0 1 586 chain 145090 chrX 155270560 + 51022112 51023820 SVA_D 2077 + 2 2056 25311 5 3 0 6 5 0 18 1 0 185 1 0 412 7 15 185 40 0 80 2 0 8 1 38 37 0 51 198 0 302 514 chain 139932 chrX 155270560 + 51032144 51033770 L1PA6 6164 + 4536 6162 26152 1626 chain 65627 chrX 155270560 + 51039278 51040028 L1PA5 6144 + 5392 6138 50281 462 0 1 141 5 0 142 chain 149288 chrX 155270560 + 51055721 51057372 L1PA4 6152 + 4493 6146 24718 883 1 3 767 chain 45467 chrX 155270560 + 51059561 51060133 MLT2A2 560 + 0 560 62527 203 0 1 111 21 7 170 0 1 67 chain 7702 chrX 155270560 + 51084064 51084616 LTR52-int 974 - 57 521 172928 20 33 24 15 7 0 24 369 303 28 6 0 50 chain 18191 chrX 155270560 + 51089228 51089560 THE1B 368 - 12 368 132353 102 46 56 30 1 0 82 31 46 40 chain 91235 chrX 155270560 + 51100062 51101096 L1PA6 6164 + 5118 6156 39221 200 0 4 834 chain 485187 chrX 155270560 + 51103945 51110604 L1PA8A 6298 + 34 6292 7552 6 1 0 15 1 0 9 3 0 6 2 0 8 4 1 19 3 0 21 28 10 18 13 11 15 1 0 15 5 2 14 2 0 5 1 0 12 10 8 6 1 0 8 2 1 13 8 4 4 1 0 42 2 1 20 6 0 79 2 0 15 1 0 10 1 0 3 1 0 76 1 0 178 1 0 4 0 1 74 16 16 10 1 0 74 0 1 92 5 0 171 3 0 39 2 6 253 314 0 186 7 6 56 1 2 83 0 3 90 0 1 411 1 0 237 4 0 861 4 0 75 0 4 253 7 0 16 5 1 149 0 2 5 0 1 333 2 3 198 35 1 377 0 3 403 1 2 132 0 1 80 0 2 81 0 3 198 2 3 260 0 4 199 0 6 23 11 11 97 chain 257012 chrX 155270560 + 51113294 51117205 L1MA1 4479 + 278 4190 15881 255 0 4 129 0 4 14 3 1 84 0 1 12 1 6 194 0 4 6 5 16 26 6 10 76 0 1 109 0 4 318 42 0 132 0 1 6 0 1 15 0 5 31 1 2 164 4 5 25 0 1 13 1 0 5 34 38 4 0 1 45 10 11 33 2 0 24 0 1 61 7 11 55 0 1 186 37 54 119 1 0 44 0 1 20 2 1 10 0 1 81 13 11 33 1 0 62 1 0 92 1 0 27 2 0 76 0 4 9 23 21 53 11 9 18 4 0 37 0 1 25 7 39 99 16 13 43 29 17 67 6 4 194 1 0 21 1 0 4 1 0 16 1 0 71 1 0 9 0 1 5 8 0 18 9 8 72 8 7 6 3 0 123 8 7 25 2 0 32 4 3 9 1 0 4 30 18 17 chain 23582 chrX 155270560 + 51130352 51131086 L1PREC2 3366 + 2634 3233 112681 112 1 0 6 2 0 47 9 8 43 1 0 3 3 0 14 56 39 14 3 0 5 0 1 25 37 20 35 6 4 41 159 90 14 56 41 22 5 0 15 chain 34801 chrX 155270560 + 51156798 51157201 L1PA6 6164 + 5761 6162 76474 304 0 1 88 3 0 8 chain 47671 chrX 155270560 + 51164892 51165495 LTR43 600 + 0 600 60718 213 1 0 229 2 0 158 chain 4419 chrX 155270560 + 51166862 51166921 L1ME1 1623 + 1190 1248 201696 18 1 0 40 chain 558280 chrX 155270560 + 51170303 51176450 L1PA3long 6157 - 0 6157 474 239 4 5 3245 0 2 62 0 3 414 0 2 1172 0 1 275 0 1 736 chain 58601 chrX 155270560 + 51205332 51205989 L1PA4 6152 + 5481 6143 53639 44 2 1 602 0 6 9 chain 52447 chrX 155270560 + 51210910 51211494 L1PA5 6144 + 5557 6143 57324 127 0 2 457 chain 70757 chrX 155270560 + 51222048 51222933 LTR12 884 + 0 884 48036 25 1 0 72 26 1 133 0 4 30 0 1 88 0 22 291 1 0 169 1 0 48 chain 248068 chrX 155270560 + 51222961 51226032 HERV9-int 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628 0 1 152 chain 146241 chrX 155270560 + 51283547 51285221 L1PA5 6144 + 4438 6132 25124 657 0 15 208 1 2 587 0 4 221 chain 538764 chrX 155270560 + 51293224 51299338 L1PA4 6152 - 1 6152 3029 1792 0 1 508 0 1 2394 0 4 453 1 4 800 0 24 35 0 4 131 chain 187957 chrX 155270560 + 51301024 51303611 MER61-int 3695 - 0 2617 20240 30 11 5 92 8 38 77 0 2 18 3 5 73 1 3 6 3 0 194 4 0 146 11 10 45 15 13 38 2 1 36 1 0 86 7 12 36 9 10 79 4 5 26 1 0 227 0 1 247 1 3 463 0 1 242 0 1 4 1 0 8 9 14 52 3 2 245 1 0 5 2 1 15 chain 388295 chrX 155270560 + 51319828 51324616 L1PA8A 6298 + 1505 6290 10504 348 1 0 84 6 5 95 1 4 347 0 4 118 28 4 236 0 1 65 0 1 147 0 9 418 1 0 6 0 1 43 0 4 259 0 1 136 0 1 29 0 1 979 6 7 550 0 1 4 2 1 75 0 2 77 0 2 75 32 23 445 0 1 42 0 1 133 chain 150008 chrX 155270560 + 51329842 51331542 L1PA5 6144 - 3 1706 24608 582 1 2 493 0 2 624 chain 116695 chrX 155270560 + 51334096 51335404 L1P1 4361 - 442 1749 32223 760 1 0 547 chain 29921 chrX 155270560 + 51341793 51342214 MER57A1 433 - 0 423 85044 141 0 1 82 11 0 9 17 28 49 0 1 112 chain 535574 chrX 155270560 + 51365993 51372113 L1PA5 6144 + 3 6142 3505 62 1 0 4 0 1 1372 11 5 252 0 1 689 0 19 1925 0 1 1577 0 4 227 chain 47657 chrX 155270560 + 51379444 51380000 LTR14 556 + 0 556 60730 556 chain 536918 chrX 155270560 + 51387694 51393700 L1PA3long 6157 + 0 6156 3322 152 10 11 155 0 1 164 1 2 296 0 128 546 0 3 2304 0 6 618 0 1 257 0 5 847 0 3 508 0 1 148 chain 70253 chrX 155270560 + 51403732 51404775 L1MA2 4263 - 150 1178 48288 7 1 0 48 7 0 90 11 10 12 25 24 105 11 8 147 1 0 77 1 5 14 9 8 68 5 0 387 0 1 17 chain 11675 chrX 155270560 + 51405407 51405675 L1MC2 1988 + 1577 1844 153578 84 54 53 18 44 44 68 chain 4842 chrX 155270560 + 51440153 51440214 MLT2B3 573 - 159 220 196867 61 chain 6012 chrX 155270560 + 51460770 51461290 L1MB8 1703 + 1015 1537 185115 57 420 419 8 0 3 35 chain 21462 chrX 155270560 + 51469813 51470097 AluSg7 307 - 3 298 122290 9 3 0 18 1 13 136 2 3 19 0 1 96 chain 25357 chrX 155270560 + 51521100 51521474 MER4E 760 + 364 741 102910 11 1 15 17 1 0 5 1 0 26 7 6 29 1 0 60 15 8 200 chain 12919 chrX 155270560 + 51542357 51543694 HSMAR2 1300 - 0 1003 148564 19 13 13 144 1117 783 44 chain 7234 chrX 155270560 + 51570382 51570642 L1MC1 2226 + 1967 2195 175866 13 3 0 14 2 0 49 52 40 14 76 62 26 1 0 10 chain 140270 chrX 155270560 + 51583532 51585075 L1PA3long 6157 - 0 1543 26105 1543 chain 3709 chrX 155270560 + 51587291 51587335 MLT1D 503 + 11 55 211807 44 chain 21851 chrX 155270560 + 51589646 51590032 MSTA 426 - 24 426 120812 80 14 22 26 1 0 19 25 38 36 1 0 11 31 27 44 3 4 95 chain 33230 chrX 155270560 + 51610376 51610812 MLT2A1 477 - 0 477 78832 33 0 50 8 15 1 212 0 4 28 5 6 135 chain 4951 chrX 155270560 + 51612507 51612580 THE1D 372 - 2 72 195697 54 2 0 12 1 0 4 chain 94146 chrX 155270560 + 51614372 51615444 L1PA5 6144 - 0 1071 38316 18 0 2 473 2 0 274 2 1 303 chain 23708 chrX 155270560 + 51642235 51642525 AluSp 311 - 8 302 111991 208 0 4 82 chain 29105 chrX 155270560 + 51648106 51648466 L1PA6 6164 - 4 361 88525 6 3 0 125 5 1 6 0 4 215 chain 316235 chrX 155270560 + 51670453 51674272 L1PA8 5853 - 0 3857 12753 92 2 1 65 0 1 4 1 0 9 1 0 72 2 0 4 0 1 42 1 0 474 3 2 56 3 20 142 0 1 1100 4 9 542 1 0 219 0 1 55 3 7 52 3 2 18 9 25 805 5 6 30 chain 16365 chrX 155270560 + 51675800 51676083 L1PA16 3655 - 36 290 137296 16 39 15 11 3 0 160 3 0 6 1 2 44 chain 124357 chrX 155270560 + 51676085 51677458 L1PA3long 6157 - 0 1374 29583 923 0 1 450 chain 138567 chrX 155270560 + 51684003 51685910 L1PA11 4918 + 2695 4578 26383 25 3 0 67 1 0 4 1 2 717 0 1 206 1 0 99 24 32 473 11 7 64 11 2 12 3 0 7 3 9 52 2 0 14 2 1 19 45 32 14 1 0 13 2 0 11 chain 23421 chrX 155270560 + 51691105 51691392 AluY 311 + 0 305 113532 123 2 0 3 8 0 30 0 28 121 chain 2758 chrX 155270560 + 51696502 51696631 L2a 937 + 225 338 229337 17 4 3 14 7 9 16 28 27 15 14 0 3 2 0 9 chain 15034 chrX 155270560 + 51701780 51702014 L1M1 2793 - 114 350 141223 6 1 0 45 5 4 14 11 16 42 1 0 109 chain 547462 chrX 155270560 + 51702464 51708623 L1PA3long 6157 - 0 6157 1773 167 8 9 974 0 1 698 0 1 132 1 2 5 1 0 3825 4 0 65 1 0 278 chain 48830 chrX 155270560 + 51716764 51717310 L1P1 4361 - 496 1043 59856 92 1 2 453 chain 90909 chrX 155270560 + 51726941 51728272 L1PA14 3548 - 73 1373 39323 10 1 0 9 6 0 41 1 0 7 11 10 5 1 0 16 4 2 29 8 4 10 1 0 111 1 0 84 1 0 6 2 0 7 16 12 75 1 3 25 12 8 48 19 15 18 2 0 231 1 0 152 7 6 37 0 4 315 chain 18921 chrX 155270560 + 51728768 51729018 AluY 311 + 10 269 130312 35 6 12 62 4 6 7 0 1 136 chain 34384 chrX 155270560 + 51731176 51731776 L1PB1 5432 - 10 579 77089 4 1 0 14 1 0 13 1 0 20 2 1 23 3 1 13 10 7 21 8 1 4 2 0 4 1 0 15 1 0 40 5 4 16 2 1 52 2 0 9 6 2 12 1 0 7 1 0 24 3 0 6 4 5 213 0 1 36 chain 101936 chrX 155270560 + 51732727 51734200 L1PA11 4918 - 340 1786 36281 11 2 0 13 1 0 12 42 25 9 4 0 33 19 17 48 25 22 60 6 0 47 0 1 489 1 3 69 0 1 264 18 22 218 0 1 4 1 0 77 chain 528870 chrX 155270560 + 51734432 51740519 L1PA4 6152 - 17 6152 4316 76 11 25 156 1 2 17 0 1 1704 0 3 467 0 2 1016 1 0 4 0 1 2116 8 35 510 chain 3041 chrX 155270560 + 51743950 51744007 L1PB3 3668 + 3543 3595 224186 23 7 3 13 1 0 13 chain 62159 chrX 155270560 + 51744442 51745230 L1PA7 6471 - 6 807 51825 88 8 0 8 1 9 101 0 2 366 1 11 166 5 6 44 chain 180640 chrX 155270560 + 51750836 51752849 L1PA3long 6157 - 0 2013 20928 2013 chain 105757 chrX 155270560 + 51753891 51755437 L1PA5 6144 + 4906 6144 35317 183 0 1 214 0 1 473 314 0 107 1 0 111 0 1 99 0 4 44 chain 27677 chrX 155270560 + 51762160 51763098 L1PA7 6471 - 3 949 12925 5 3 0 35 5 0 40 0 1 78 3 4 168 0 1 205 1 0 199 0 7 10 17 20 70 0 4 99 chain 35072 chrX 155270560 + 51763122 51763503 L1PA3long 6157 - 0 381 76089 381 chain 524258 chrX 155270560 + 51763543 51769680 L1PA2 6032 - 16 6024 4745 611 0 1 655 3 1 199 7 6 916 0 1 802 0 1 820 0 2 880 1 0 343 138 10 512 1 0 90 13 12 146 chain 89789 chrX 155270560 + 51769688 51772731 L1PA7 6471 - 949 4132 12925 47 0 1 4 1 0 633 0 2 274 0 16 287 0 1 158 0 1 519 0 5 77 1 0 11 1 2 678 1 123 36 13 6 302 chain 7823 chrX 155270560 + 51782379 51782483 L1PA8 5853 + 5750 5853 172173 10 2 1 92 chain 11148 chrX 155270560 + 51792236 51792391 L1PA5 6144 + 5965 6131 155639 19 6 0 81 1 18 48 chain 110505 chrX 155270560 + 51815898 51817571 L1PA14 3548 - 92 1729 34073 59 1 0 10 13 10 13 22 18 14 1 0 111 1 0 84 1 0 6 55 35 38 6 0 44 0 30 30 42 37 229 0 1 4 5 0 146 1 0 228 0 1 19 6 5 317 3 0 76 18 1 62 0 1 8 chain 92261 chrX 155270560 + 51835873 51836916 L1PA3long 6157 - 2151 3196 38887 713 0 1 45 0 1 285 chain 191504 chrX 155270560 + 51836916 51839048 L1PA3long 6157 + 4024 6156 19912 1276 1 0 685 0 1 170 chain 30562 chrX 155270560 + 51839061 51839432 L1PA5 6144 + 5761 6136 83275 229 0 5 6 5 4 131 chain 528946 chrX 155270560 + 51843670 51849845 L1PA4 6152 - 1 6150 4308 138 0 7 5 7 0 1130 2 1 204 0 1 2846 0 1 108 1 0 466 1 0 410 17 0 121 12 5 132 1 0 574 chain 433671 chrX 155270560 + 51854229 51860361 L1PA7 6471 + 5 6468 9221 92 71 57 55 161 358 15 28 27 22 3 1 16 0 19 10 5 5 35 152 237 37 79 100 24 22 5 115 0 25 19 1 0 9 8 9 185 4 13 23 39 37 6 0 2 28 23 24 905 0 2 119 2 0 198 2 1 1892 0 10 336 0 1 5 1 0 537 1 0 847 chain 520375 chrX 155270560 + 51862251 51868407 L1PA5 6144 + 0 6144 5116 91 0 1 696 31 14 12 4 21 334 9 0 264 3 1 512 0 1 497 7 9 20 9 0 64 0 2 51 0 1 2187 0 1 1365 chain 41268 chrX 155270560 + 51871124 51871683 L1PA15 4387 + 63 616 67574 9 0 2 171 1 0 200 6 1 65 1 0 83 1 0 22 chain 33353 chrX 155270560 + 51877955 51878329 L1PA3long 6157 + 5778 6152 78647 374 chain 519318 chrX 155270560 + 51888430 51894376 L1PA4 6152 - 9 6150 5232 56 4 0 95 0 1 256 0 1 2403 0 1 256 0 180 63 5 19 610 0 2 648 0 1 315 1 0 1234 chain 54280 chrX 155270560 + 51894376 51894991 L1PA4 6152 - 322 937 56120 615 chain 9326 chrX 155270560 + 51894991 51895100 L1PA4 6152 + 5106 5215 163910 109 chain 43470 chrX 155270560 + 51898817 51899296 L1PA3long 6157 + 5677 6156 64846 479 chain 537136 chrX 155270560 + 51903017 51909152 L1PA4 6152 + 0 6144 3294 172 1 2 1032 0 1 993 0 2 696 0 1 298 0 1 1376 0 1 595 0 1 148 1 2 823 chain 26905 chrX 155270560 + 51909164 51909480 L1PA4 6152 + 5820 6136 96609 316 chain 528429 chrX 155270560 + 51913880 51920014 L1PA5 6144 + 0 6135 4360 337 23 21 1263 1 0 877 0 2 509 1 0 149 1 0 1183 0 4 1790 chain 110697 chrX 155270560 + 51922715 51924388 L1PA14 3548 + 1819 3456 34033 8 0 1 62 18 1 76 3 0 317 6 5 19 0 1 231 1 0 143 5 0 4 0 1 229 42 37 27 0 30 46 6 0 39 55 35 6 1 0 14 3 4 7 1 0 59 1 0 111 1 0 10 5 1 34 13 10 10 1 0 59 chain 11148 chrX 155270560 + 51947922 51948077 L1PA5 6144 - 13 179 155640 48 1 18 79 6 0 21 chain 3738 chrX 155270560 + 51963041 51963180 THE1C 375 - 39 178 121482 139 chain 43573 chrX 155270560 + 51963181 51963670 MER9a1 513 + 2 491 64716 489 chain 4572 chrX 155270560 + 51963677 51963847 THE1C 375 - 207 375 121482 50 1 2 50 0 2 18 5 0 46 chain 552371 chrX 155270560 + 51965232 51971252 L1PA2 6032 + 12 6031 1150 797 4 0 284 0 1 3448 0 1 1317 0 1 170 chain 130330 chrX 155270560 + 51971252 51973116 L1MA2 4263 + 2257 4114 27942 385 1 0 266 5 6 40 47 56 430 3 0 126 0 3 11 6 1 4 0 1 76 1 0 131 37 34 89 2 1 39 15 13 65 5 7 17 7 0 11 0 1 35 1 0 9 chain 86656 chrX 155270560 + 51979051 51980102 MER11C 1089 + 0 1063 40901 150 0 2 98 1 2 65 0 4 211 24 25 131 0 4 12 1 0 33 0 1 325 chain 34607 chrX 155270560 + 51987174 51987601 L1PA7 6471 + 5188 5614 76748 65 9 10 234 8 6 111 chain 72164 chrX 155270560 + 51987601 51988466 L1PA7 6471 + 5617 6468 47398 331 17 7 506 4 0 7 chain 10571 chrX 155270560 + 51996864 51996978 L1PA4 6152 + 5865 5979 157951 114 chain 14254 chrX 155270560 + 51996980 51997141 L1PA4 6152 + 5980 6141 143703 161 chain 25816 chrX 155270560 + 52006781 52007223 MLT2A2 560 + 0 560 100806 168 61 59 68 0 1 4 4 113 45 0 5 39 6 4 12 6 13 29 chain 27733 chrX 155270560 + 52014472 52014843 LTR1 825 - 7 385 93924 16 0 1 47 1 2 159 0 4 49 8 6 78 0 3 13 chain 41347 chrX 155270560 + 52014844 52015353 MER11B 1079 + 0 510 67475 363 0 2 64 1 0 34 1 0 29 1 2 16 chain 28282 chrX 155270560 + 52015360 52015715 MER4A1 472 + 122 472 91997 65 4 0 81 1 0 204 chain 16104 chrX 155270560 + 52023805 52024284 LTR10B1 532 - 18 525 138044 139 42 46 32 37 152 25 147 58 22 14 12 21 chain 534649 chrX 155270560 + 52034929 52041075 L1PA4 6152 + 1 6152 3635 74 0 1 959 1 0 420 0 1 254 1 0 603 2 0 5 0 2 809 2 1 47 0 1 72 0 5 434 1 0 2128 1 2 333 chain 99801 chrX 155270560 + 52041875 52043129 L1P2 5180 + 2 1271 36830 133 32 31 34 1 0 47 7 6 262 1 0 71 0 4 197 0 15 469 chain 6418 chrX 155270560 + 52044228 52044350 L1MA5A 2387 - 57 173 181881 13 24 10 12 1 0 65 0 9 7 chain 75671 chrX 155270560 + 52048129 52048971 L1PA4 6152 - 1 843 45675 842 chain 121839 chrX 155270560 + 52051235 52052603 L1PA5 6144 + 4758 6129 30431 913 0 3 455 chain 8958 chrX 155270560 + 52059665 52059765 L1PA5 6144 + 6040 6140 165836 100 chain 78939 chrX 155270560 + 52064562 52065438 L1PA4 6152 + 4494 5370 44087 876 chain 67211 chrX 155270560 + 52065445 52066217 L1PA4 6152 + 5379 6150 49560 505 9 8 258 chain 17799 chrX 155270560 + 52070210 52070412 L1PA6 6164 - 8 211 133406 140 1 2 61 chain 5074 chrX 155270560 + 52102506 52102568 MER66C 541 + 0 63 194378 28 0 1 34 chain 109107 chrX 155270560 + 52126958 52128157 L1PA3long 6157 + 4959 6157 34418 1047 1 0 151 chain 403361 chrX 155270560 + 52136010 52141709 L1PB1 5432 - 35 5327 9989 6 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 14 1 16 2 1 43 1 0 15 10 9 43 2 0 11 4 0 11 1 0 13 1 0 20 1 0 9 14 25 34 15 13 313 287 0 93 3 0 247 1 2 158 0 1 20 0 1 148 0 1 56 1 0 35 0 2 133 1 3 88 1 4 80 0 1 84 0 1 314 0 1 182 126 13 19 0 1 98 0 4 39 1 4 50 6 1 286 0 4 19 3 4 30 0 1 114 0 4 15 17 18 135 1 2 806 17 2 41 0 1 711 0 4 230 1 2 5 1 0 151 5 6 140 chain 14580 chrX 155270560 + 52136726 52136910 L1PA4 6152 - 0 182 142659 6 0 5 133 8 1 37 chain 7805 chrX 155270560 + 52136910 52136997 L1PA4 6152 + 5853 5940 170621 87 chain 30108 chrX 155270560 + 52181602 52181996 MLT2A1 477 - 76 469 84465 16 0 2 213 12 9 153 chain 4209 chrX 155270560 + 52182772 52182849 L1MA3 4352 - 20 93 204427 4 1 0 14 1 0 26 1 0 5 2 1 23 chain 182867 chrX 155270560 + 52185356 52187405 L1PA4 6152 - 66 2138 20693 35 0 18 1652 0 3 89 0 2 273 chain 7293 chrX 155270560 + 52214411 52214500 MLT2A2 560 - 470 559 175494 89 chain 7029 chrX 155270560 + 52215473 52215553 L1PA2 6032 - 2 82 177259 80 chain 37665 chrX 155270560 + 52216056 52216538 LTR2B 499 + 0 499 72595 14 0 1 59 3 0 37 0 19 175 3 4 8 1 0 182 chain 41255 chrX 155270560 + 52220535 52221009 L1PA7 6471 + 5986 6460 67589 474 chain 3567 chrX 155270560 + 52237284 52237324 MER66C 541 + 0 40 214185 40 chain 41255 chrX 155270560 + 52278164 52278638 L1PA7 6471 - 11 485 67591 474 chain 35804 chrX 155270560 + 52282635 52283117 LTR2B 499 - 0 499 75126 182 1 0 8 3 4 41 0 5 11 6 1 103 0 12 15 0 7 36 3 0 59 0 1 14 chain 7029 chrX 155270560 + 52283620 52283700 L1PA2 6032 + 5950 6030 177258 80 chain 7293 chrX 155270560 + 52284673 52284762 MLT2A2 560 + 1 90 175492 89 chain 32512 chrX 155270560 + 52311768 52312130 L1PA4 6152 + 4014 4378 80002 273 0 2 89 chain 150805 chrX 155270560 + 52312130 52313817 L1PA4 6152 + 4381 6086 24498 1657 0 18 30 chain 30108 chrX 155270560 + 52317177 52317571 MLT2A1 477 + 8 401 84464 153 12 9 213 0 2 16 chain 403361 chrX 155270560 + 52357464 52363163 L1PB1 5432 + 105 5397 9988 140 5 6 151 1 0 5 1 2 230 0 4 711 0 1 41 17 2 806 1 2 135 17 18 16 0 4 120 0 1 23 3 4 19 0 4 286 6 1 50 1 4 34 0 4 103 0 1 19 126 13 182 0 1 314 0 1 84 0 1 80 1 4 88 1 3 138 0 2 30 1 0 56 0 1 152 0 1 16 0 1 158 1 2 247 3 0 84 287 0 322 15 13 34 14 25 9 1 0 24 1 0 9 1 0 11 4 0 11 2 0 43 10 9 15 1 0 43 2 1 16 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 6 chain 8074 chrX 155270560 + 52362173 52362263 L1PA4 6152 - 209 299 170622 90 chain 14580 chrX 155270560 + 52362263 52362447 L1PA4 6152 + 5970 6152 142658 37 8 1 133 0 5 6 chain 109107 chrX 155270560 + 52371016 52372215 L1PA3long 6157 - 0 1198 34419 151 1 0 1047 chain 30472 chrX 155270560 + 52454538 52454936 MLT2A1 477 - 72 469 83484 20 0 2 213 12 9 153 chain 2466 chrX 155270560 + 52455712 52455749 L1MA3 4352 - 20 55 233506 4 1 0 14 1 0 17 chain 182867 chrX 155270560 + 52458296 52460345 L1PA4 6152 - 66 2138 20692 35 0 18 1652 0 3 89 0 2 273 chain 7293 chrX 155270560 + 52487351 52487440 MLT2A2 560 - 470 559 175493 89 chain 37665 chrX 155270560 + 52488996 52489478 LTR2B 499 + 0 499 72594 14 0 1 59 3 0 37 0 19 175 3 4 8 1 0 182 chain 41255 chrX 155270560 + 52493475 52493949 L1PA7 6471 + 5986 6460 67588 474 chain 3567 chrX 155270560 + 52510235 52510275 MER66C 541 + 0 40 214184 40 chain 41255 chrX 155270560 + 52564030 52564504 L1PA7 6471 - 11 485 67590 474 chain 192280 chrX 155270560 + 52579783 52582238 L1P2 5180 + 4 2529 19842 146 1 0 44 1 0 45 0 29 180 33 14 20 0 1 32 1 0 47 16 15 123 3 7 80 0 15 258 0 1 394 0 5 748 5 6 24 0 44 25 19 12 210 chain 44318 chrX 155270560 + 52597185 52597695 HERV1_LTRb 511 - 0 511 63808 10 0 1 500 chain 87081 chrX 155270560 + 52600340 52601373 MER11C 1089 + 0 1073 40745 567 2 1 234 0 69 138 28 0 64 chain 44074 chrX 155270560 + 52607349 52607860 HERV1_LTRb 511 - 0 511 64132 511 chain 22696 chrX 155270560 + 52623776 52624056 L1PB 1623 - 731 1011 117093 280 chain 69243 chrX 155270560 + 52629644 52630407 L1PA3long 6157 - 1415 2178 48640 763 chain 124414 chrX 155270560 + 52630407 52631789 L1PA3long 6157 + 4774 6157 29567 98 0 1 1284 chain 4978 chrX 155270560 + 52661377 52661443 Tigger1 2417 - 2163 2226 195392 57 3 0 6 chain 37179 chrX 155270560 + 52722996 52723418 L1PA4 6152 + 5730 6149 73263 411 3 0 8 chain 138215 chrX 155270560 + 52756572 52758131 L1PA4 6152 + 4579 6132 26450 494 0 1 920 7 0 138 chain 140176 chrX 155270560 + 52758351 52759929 L1PA4 6152 - 1 1573 26119 154 7 0 924 0 1 493 chain 37179 chrX 155270560 + 52793140 52793562 L1PA4 6152 - 3 422 73264 8 3 0 411 chain 32326 chrX 155270560 + 52825856 52826306 LTR46 455 + 0 455 80310 188 8 6 21 0 1 140 25 32 6 1 0 61 chain 146287 chrX 155270560 + 52855231 52856824 SVA_F 1814 - 0 1814 25116 676 1 0 49 0 142 35 0 1 19 5 4 143 0 40 29 0 40 636 chain 50839 chrX 155270560 + 52865172 52866070 L1P1 4361 - 33 612 58299 23 1 0 157 1 0 231 317 0 168 chain 124218 chrX 155270560 + 52866070 52867477 L1PA4 6152 + 4600 6143 29615 604 1 0 286 0 136 37 0 1 479 chain 39114 chrX 155270560 + 52869038 52869513 L1PA6 6164 + 5678 6162 70584 312 23 32 140 chain 12500 chrX 155270560 + 52870889 52871027 L1PA4 6152 - 16 154 150238 138 chain 18991 chrX 155270560 + 52872288 52872507 L1PA4 6152 - 12 235 130134 144 0 4 75 chain 513094 chrX 155270560 + 52872516 52878703 L1PA6 6164 - 4 6147 5876 24 12 6 106 8 0 11 1 9 689 1 0 1926 9 8 156 4 2 22 4 5 52 0 1 811 41 0 64 2 0 1018 2 3 651 17 7 79 2 1 42 0 6 366 0 11 67 chain 24340 chrX 155270560 + 52884577 52884927 L1PA8 5853 + 5495 5853 108421 69 1 0 33 8 16 53 1 0 12 7 10 55 1 0 17 2 1 22 0 1 69 chain 156768 chrX 155270560 + 52887807 52889642 L1PA3long 6157 + 4332 6132 23765 695 1 0 4 0 1 272 0 4 443 40 1 380 chain 31190 chrX 155270560 + 52889669 52890023 L1PA4 6152 + 5768 6122 82179 354 chain 11862 chrX 155270560 + 52900226 52900450 L1PB1 5432 + 5221 5422 152779 16 1 0 44 1 0 15 2 0 6 16 6 19 7 4 15 2 0 26 1 0 19 1 0 13 1 0 14 1 0 4 chain 358563 chrX 155270560 + 52906794 52910841 L1PA4 6152 + 2109 6143 11391 278 0 1 1265 6 0 8 1 0 28 2 0 616 1 0 433 4 0 1405 chain 215867 chrX 155270560 + 52911623 52914059 L1PA5 6144 - 2 2457 18118 150 1 0 594 0 36 25 26 14 590 4 0 439 1 0 362 0 1 244 chain 15807 chrX 155270560 + 52942798 52942966 AluYb8 318 + 145 313 138936 168 chain 142320 chrX 155270560 + 52958244 52959937 L1PA7 6471 + 4765 6462 25759 190 1 0 39 1 0 174 0 1 452 0 3 430 0 1 252 0 1 154 chain 29428 chrX 155270560 + 52961291 52961607 AluYb8 318 - 1 318 86943 33 0 1 283 chain 213015 chrX 155270560 + 53000001 53002409 L1PA5 6144 + 3715 6142 18296 218 0 1 364 1 0 433 4 0 592 26 14 25 0 36 594 1 0 150 chain 8304 chrX 155270560 + 53030307 53030421 MER5A 189 - 1 113 169375 27 1 0 47 3 2 36 chain 13316 chrX 155270560 + 53036451 53036630 MSTB-int 1649 - 1280 1458 147028 132 6 5 41 chain 4488 chrX 155270560 + 53044211 53044282 L1MB7 1623 + 710 795 200921 37 9 23 25 chain 29067 chrX 155270560 + 53073990 53074377 MER41G 495 + 5 386 88688 193 12 8 131 2 0 49 chain 23968 chrX 155270560 + 53086648 53086966 AluSp 311 + 10 309 110524 35 0 1 79 18 1 162 3 0 21 chain 20665 chrX 155270560 + 53091417 53091729 MSTD-int 1705 - 14 330 125090 121 5 7 43 31 33 112 chain 2889 chrX 155270560 + 53093101 53093133 MSTD-int 1705 + 203 235 227222 32 chain 2920 chrX 155270560 + 53119216 53119247 L1MC3 1789 - 214 245 226679 31 chain 96336 chrX 155270560 + 53128565 53130499 Tigger1 2417 - 632 1955 37724 113 1 0 40 5 6 436 0 4 50 8 7 12 1 0 77 1 4 71 655 40 15 1 0 448 chain 15331 chrX 155270560 + 53140856 53141049 MER107 203 + 0 201 140390 156 1 9 36 chain 24646 chrX 155270560 + 53141177 53141656 L1PB1 5432 - 10 458 106747 18 2 1 11 6 5 17 1 0 24 2 0 13 10 7 18 18 8 4 1 0 16 1 0 12 1 0 32 6 5 10 2 1 52 2 0 9 6 2 13 1 0 6 1 0 23 5 0 7 3 5 119 0 3 7 chain 24658 chrX 155270560 + 53166673 53166967 AluSp 311 + 9 298 106678 111 5 0 178 chain 458887 chrX 155270560 + 53174200 53179421 L1PA4 6152 + 1 6141 8445 474 7 11 652 0 6 309 0 4 160 0 18 209 0 4 739 0 1 908 12 895 161 0 1 745 0 4 340 4 0 19 2 0 480 chain 24647 chrX 155270560 + 53188295 53188726 LTR3A 482 - 62 482 106735 17 1 0 89 1 3 39 85 67 44 2 6 40 4 6 109 chain 9285 chrX 155270560 + 53193759 53193887 LTR9B 643 + 0 138 164143 67 4 6 30 0 8 27 chain 148593 chrX 155270560 + 53194828 53196864 HUERS-P3b-int 2065 + 13 2031 24808 81 3 0 214 23 27 220 26 23 62 0 8 39 4 0 33 0 1 36 18 17 50 5 4 21 1 0 57 2 0 84 0 2 228 0 1 164 0 1 85 1 0 44 4 2 84 2 0 13 1 0 25 1 0 89 3 1 73 2 0 18 4 1 9 4 1 53 4 0 57 2 1 24 4 6 59 chain 13223 chrX 155270560 + 53197408 53197584 LTR9B 643 + 0 186 147379 67 4 6 30 0 8 75 chain 23785 chrX 155270560 + 53211260 53211563 AluSp 311 - 6 310 111558 153 0 3 5 9 6 30 0 1 106 chain 14920 chrX 155270560 + 53351847 53352085 L1MB7 1623 + 933 1176 141573 57 10 9 23 27 33 7 0 1 4 1 0 109 chain 9447 chrX 155270560 + 53353766 53353877 HY1 111 + 0 111 163326 111 chain 7234 chrX 155270560 + 53443667 53443762 L1MB2 1706 + 1600 1694 175865 11 1 0 83 chain 3562 chrX 155270560 + 53464479 53464521 MER57C2 434 + 326 368 214300 42 chain 21020 chrX 155270560 + 53488822 53489136 LTR61 567 + 0 293 123847 21 18 0 34 0 11 128 13 0 28 1 0 71 chain 8329 chrX 155270560 + 53489265 53489371 LTR61 567 - 0 103 169224 49 3 0 54 chain 3212 chrX 155270560 + 53495822 53495860 L1MB5 1630 - 327 365 220705 38 chain 16726 chrX 155270560 + 53495860 53496816 Tigger4b 360 + 0 360 136328 25 7 0 9 15 39 10 0 1 16 16 39 31 637 0 83 0 1 49 12 11 46 chain 43571 chrX 155270560 + 53496985 53497475 LTR2C 499 + 8 499 64721 427 0 1 63 chain 6865 chrX 155270560 + 53505796 53506536 MER51A 677 - 18 497 178464 46 0 3 27 586 352 32 36 6 13 chain 1177 chrX 155270560 + 53529209 53529413 LTR49-int 1717 + 658 858 135312 33 1 0 32 1 0 11 3 1 6 1 0 40 0 1 76 chain 5549 chrX 155270560 + 53529413 53529481 MER41B 635 - 0 68 189577 68 chain 138613 chrX 155270560 + 53530356 53532064 SVA_C 1631 + 14 1627 26377 16 15 0 564 40 0 248 13 9 13 1 0 47 0 1 15 0 1 17 0 4 6 10 15 11 42 1 20 2 0 5 2 1 10 1 0 593 1 0 16 chain 2447 chrX 155270560 + 53531372 53531400 SVA_C 1631 + 1063 1091 142854 28 chain 634 chrX 155270560 + 53532064 53532174 LTR49-int 1717 + 887 994 135312 20 2 1 71 2 0 15 chain 9475 chrX 155270560 + 53537141 53537375 LTR49 580 + 6 213 163192 5 1 0 64 9 10 12 0 1 33 2 1 15 8 1 14 53 33 18 chain 40083 chrX 155270560 + 53539640 53540103 LTR2 463 + 0 463 69205 463 chain 434236 chrX 155270560 + 53541891 53547280 Harlequin-int 5206 + 125 5206 9208 181 1 0 70 2 0 78 1 2 28 3 0 198 1 0 164 0 1 297 0 3 108 1 0 56 0 4 2073 0 1 248 0 1 15 0 2 29 1 0 4 1 2 8 0 1 547 0 1 288 0 9 6 6 0 5 3 0 125 314 0 91 2 1 434 chain 37440 chrX 155270560 + 53547280 53547741 LTR2 463 + 0 463 72903 127 1 4 107 5 4 221 chain 40106 chrX 155270560 + 53547917 53548397 LTR10F 562 + 0 562 69170 107 0 84 40 3 0 91 1 2 238 chain 9179 chrX 155270560 + 53549063 53549204 Tigger2 2703 + 128 268 164663 18 13 12 110 chain 21190 chrX 155270560 + 53552563 53552879 THE1D 372 + 58 370 123241 42 1 2 58 41 36 174 chain 117560 chrX 155270560 + 53552904 53554834 THE1D-int 1627 + 20 1627 31942 18 2 1 384 5 8 209 10 17 62 24 7 70 20 21 89 316 0 143 2 0 308 3 4 248 1 0 4 1 3 11 chain 20905 chrX 155270560 + 53555791 53556066 LTR54 533 - 255 533 124258 31 1 2 173 0 2 70 chain 23656 chrX 155270560 + 53580127 53580402 AluSg7 307 - 32 307 112278 275 chain 3505 chrX 155270560 + 53590052 53590095 MIRc 230 + 86 129 215278 43 chain 87178 chrX 155270560 + 53604458 53605437 SVA_D 2077 + 0 1335 40699 24 0 2 21 0 12 149 4 1 557 0 37 105 0 81 4 0 227 115 chain 10707 chrX 155270560 + 53605502 53605675 SVA_E 1901 + 848 1046 75514 32 17 43 4 1 0 119 chain 103981 chrX 155270560 + 53605675 53606925 SVA_E 1901 + 669 1901 35737 49 0 41 13 1 0 18 72 14 8 1 0 5 1 0 110 4 0 39 5 13 162 1 0 4 0 1 748 2 0 7 chain 2599 chrX 155270560 + 53605756 53605798 SVA_E 1901 + 1127 1167 75514 7 2 0 33 chain 7921 chrX 155270560 + 53611760 53611875 MER30 238 - 1 112 171516 70 0 6 28 10 0 7 chain 5577 chrX 155270560 + 53678192 53678323 L1MA10 1535 - 74 192 189307 13 6 3 23 0 2 8 33 21 48 chain 8204 chrX 155270560 + 53698060 53698230 L1PB1 5432 + 5280 5427 169932 16 3 0 6 16 6 19 2 0 4 1 0 15 3 1 23 1 0 21 1 0 13 1 0 18 2 0 5 chain 26786 chrX 155270560 + 53698473 53698770 AluYf4 310 + 11 305 97027 121 3 0 173 chain 24236 chrX 155270560 + 53708118 53708393 AluSc 308 + 20 297 109017 240 0 2 35 chain 136939 chrX 155270560 + 53725233 53726718 L1PA2 6032 - 2 1487 26654 1485 chain 14076 chrX 155270560 + 53733960 53734445 MER101 471 + 175 471 144304 26 24 0 65 252 85 41 7 9 70 chain 108889 chrX 155270560 + 53748081 53749425 SVA_B 1603 + 0 1603 34464 19 0 28 144 6 5 288 75 1 33 1 194 61 0 40 108 4 0 29 0 77 576 chain 3835 chrX 155270560 + 53751330 53751380 MSTB1-int 1597 + 342 392 209851 50 chain 7272 chrX 155270560 + 53753815 53753907 MSTB1 431 + 323 416 175639 7 0 1 85 chain 19158 chrX 155270560 + 53758030 53758662 Tigger2 2703 + 1054 1332 129654 72 342 0 81 29 19 28 2 0 78 chain 59958 chrX 155270560 + 53788385 53789046 L1PA5 6144 - 293 954 52843 661 chain 23276 chrX 155270560 + 53789046 53789314 L1PA5 6144 + 5861 6128 114316 232 1 0 35 chain 37317 chrX 155270560 + 53797430 53797891 LTR2 463 + 0 463 73063 21 1 0 108 0 3 22 4 3 210 0 1 95 chain 83354 chrX 155270560 + 53798470 53799388 SVA_E 1901 - 0 1039 42178 536 0 127 279 3 1 31 4 0 65 chain 165946 chrX 155270560 + 53805932 53809040 L1MA1 4479 - 343 3247 22520 29 2 0 29 9 8 99 6 4 15 12 8 15 1 0 70 1 0 6 0 1 7 2 0 8 19 18 60 11 10 14 3 1 19 1 0 177 13 468 51 0 2 27 9 7 25 1 0 87 14 9 37 0 1 20 1 0 31 2 0 105 2 1 65 1 0 74 330 19 110 7 14 7 7 0 20 1 0 5 0 2 139 0 1 44 0 1 42 13 15 19 2 0 118 0 4 21 1 0 33 329 0 37 6 3 27 6 4 6 0 1 75 0 1 313 4 7 17 0 1 115 0 1 74 chain 28761 chrX 155270560 + 53808042 53808360 AluYb8 318 - 4 318 90068 182 4 0 132 chain 544682 chrX 155270560 + 53809860 53816004 L1PA4 6152 + 6 6137 2112 203 0 1 4 1 0 41 0 4 11 0 1 1753 0 1 175 0 2 1620 3 0 50 1 2 4 1 0 881 22 0 539 0 4 835 chain 3450 chrX 155270560 + 53816341 53816380 L1MC4 1079 + 712 751 216203 39 chain 23603 chrX 155270560 + 53824489 53824775 AluSg 306 + 10 296 112566 286 chain 23942 chrX 155270560 + 53825204 53825495 AluSp 311 + 10 300 110666 269 1 0 21 chain 24636 chrX 155270560 + 53834577 53834869 AluSc8 310 + 11 305 106802 121 0 3 25 0 1 133 2 0 11 chain 7550 chrX 155270560 + 53846096 53846193 MER41E 591 - 495 591 173875 26 1 0 70 chain 40142 chrX 155270560 + 53852039 53853171 L1MA2 4263 + 3434 4043 69122 64 2 0 26 5 0 37 6 5 15 9 5 76 1 0 71 506 0 60 16 13 53 1 0 23 0 2 60 23 21 78 chain 4296 chrX 155270560 + 53862956 53863004 L1MA4A 3247 - 2192 2240 203289 48 chain 537351 chrX 155270560 + 53874590 53880995 L1PA4 6152 - 9 6152 3265 139 1 2 110 0 1 833 5 4 34 1 0 628 276 8 534 18 0 998 1 0 1616 1 0 506 1 0 105 0 1 437 6 32 155 chain 22989 chrX 155270560 + 53876354 53876617 L1PA4 6152 - 2656 2925 114440 128 0 1 108 0 5 27 chain 20326 chrX 155270560 + 53881279 53881561 L1MA3 4352 - 1629 1909 126157 141 6 5 13 1 0 47 5 0 13 0 5 56 chain 8461 chrX 155270560 + 53882571 53882670 L1PA8A 6298 + 6192 6291 168509 99 chain 93518 chrX 155270560 + 53891415 53893379 L1MA3 4352 + 2954 4309 38502 182 1 0 111 1 4 130 2 0 15 7 8 37 0 1 74 7 8 4 0 1 16 305 0 139 1 0 317 0 4 87 38 27 55 303 0 55 16 23 6 2 0 24 1 0 6 1 0 21 chain 53394 chrX 155270560 + 53907089 53907842 MER4E 760 + 0 760 56764 17 0 1 36 0 1 57 1 5 53 1 0 15 1 0 65 1 0 31 4 2 76 2 4 56 23 0 10 23 45 106 0 1 5 0 4 170 chain 7617 chrX 155270560 + 53913455 53913598 MER2 342 + 53 195 173429 15 35 34 93 chain 488295 chrX 155270560 + 53915344 53920951 L1PA4 6152 + 631 6137 7427 2781 71 0 82 11 0 4 7 0 353 18 0 1126 0 1 565 1 6 588 chain 79314 chrX 155270560 + 53933863 53934740 L1PA3long 6157 - 0 888 43901 778 0 1 7 0 10 92 chain 3461 chrX 155270560 + 53936931 53936971 L1MD2 1676 - 312 352 215983 40 chain 23438 chrX 155270560 + 53942876 53943163 AluSp 311 + 12 298 113432 41 6 5 240 chain 9650 chrX 155270560 + 53945214 53945350 LTR42 492 + 106 243 162347 14 1 2 36 3 0 8 0 3 74 chain 6830 chrX 155270560 + 53945820 53945898 Tigger1 2417 + 2077 2155 178724 78 chain 36364 chrX 155270560 + 53948335 53948784 MER4A1 472 + 0 472 74416 15 0 2 205 10 31 219 chain 44870 chrX 155270560 + 53949055 53949937 MER41A 554 + 0 554 63210 361 332 0 44 0 4 145 chain 26538 chrX 155270560 + 53954327 53954801 MER41-int 2638 + 86 2636 97899 15 7 4 6 3 0 18 15 17 24 29 14 29 17 2105 46 0 2 41 0 5 224 chain 44673 chrX 155270560 + 53954810 53955662 MER41A 554 + 0 554 63409 181 0 1 226 0 4 15 309 6 121 chain 24897 chrX 155270560 + 53958589 53958895 AluSp 311 - 0 303 105362 34 2 1 148 2 0 120 chain 22839 chrX 155270560 + 53986032 53986320 AluSz6 309 + 20 306 116400 113 2 0 173 chain 70506 chrX 155270560 + 53989972 53990820 L1PA7 6471 + 5614 6466 48160 489 2 0 5 0 2 26 0 1 72 0 1 97 9 9 130 0 4 9 2 0 7 chain 6732 chrX 155270560 + 53991401 53991484 L1MB2 1706 + 1611 1694 179452 83 chain 17027 chrX 155270560 + 53991837 53992046 AluSz6 309 + 48 257 135517 209 chain 165470 chrX 155270560 + 53992633 53994565 SVA_D 2077 + 0 2077 22595 20 0 3 739 40 0 141 1 0 14 2 0 26 3 0 4 37 0 89 0 2 54 0 1 114 0 225 334 1 0 304 2 0 7 chain 3290 chrX 155270560 + 53993623 53993660 SVA_D 2077 + 1137 1174 80848 37 chain 210629 chrX 155270560 + 53996791 53999793 L1PA10 4194 + 1413 4146 18460 19 9 39 140 2 0 36 0 2 42 7 9 416 0 2 37 0 4 67 0 4 266 0 12 122 17 10 75 0 1 27 0 1 5 1 0 387 317 0 196 0 3 781 4 1 29 chain 32373 chrX 155270560 + 54000004 54000401 L1PA11 4918 + 3948 4347 80236 381 0 2 16 chain 25657 chrX 155270560 + 54000411 54000709 AluY 311 + 1 293 101460 161 6 0 131 chain 7463 chrX 155270560 + 54022853 54022963 MER30 238 + 116 238 174384 6 4 0 35 4 20 61 chain 4462 chrX 155270560 + 54027960 54028025 L1MD2 1676 + 1481 1541 201202 53 5 0 7 chain 4679 chrX 155270560 + 54036995 54037097 L1MD 993 + 361 466 198764 27 2 0 18 26 31 29 chain 24354 chrX 155270560 + 54045054 54045341 AluSp 311 - 13 300 108347 186 0 1 4 1 0 96 chain 24574 chrX 155270560 + 54046335 54046623 AluSq10 312 + 0 287 107113 103 2 1 183 chain 29288 chrX 155270560 + 54047890 54048200 AluYa5 310 - 0 310 87628 310 chain 23265 chrX 155270560 + 54060987 54061282 AluSg7 307 + 14 306 114360 49 3 1 132 14 13 97 chain 24213 chrX 155270560 + 54068453 54068761 AluSp 311 + 0 311 109131 173 1 2 88 0 2 46 chain 21771 chrX 155270560 + 54078749 54078985 L1PA4 6152 - 1 237 121126 236 chain 55225 chrX 155270560 + 54078985 54079676 L1P1 4361 - 563 4360 55569 119 4 5 227 2 3107 339 chain 5780 chrX 155270560 + 54087288 54087372 L1PB1 5432 + 5337 5420 187353 9 2 0 24 1 0 22 0 3 9 1 0 16 chain 29419 chrX 155270560 + 54091732 54092042 AluYa5 310 - 0 310 86989 310 chain 24865 chrX 155270560 + 54092043 54092338 AluSp 311 - 15 310 105544 295 chain 5894 chrX 155270560 + 54109190 54109268 Charlie20a 515 - 163 240 186243 15 1 0 62 chain 5810 chrX 155270560 + 54112795 54112866 MER58A 224 - 9 80 187047 71 chain 23191 chrX 155270560 + 54116113 54116405 AluSp 311 + 1 294 114717 98 0 2 176 6 5 12 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54242725 SVA_B 1603 + 0 1593 37947 11 12 1 12 1 25 165 0 1 228 0 76 118 0 398 139 0 2 278 7 0 139 chain 27073 chrX 155270560 + 54269566 54269880 AluYk4 311 + 0 308 96029 109 1 0 17 5 0 182 chain 24518 chrX 155270560 + 54293172 54293485 L1PA8 5853 - 1 307 107454 91 2 1 17 1 0 50 1 0 11 1 0 74 2 0 44 1 0 18 chain 15004 chrX 155270560 + 54293485 54293666 L1PA8 5853 + 5341 5522 141308 156 1 0 4 0 1 20 chain 27464 chrX 155270560 + 54297018 54297365 L1PA8 5853 - 6 347 94765 87 1 0 17 1 0 54 1 0 81 2 0 39 6 5 58 chain 24680 chrX 155270560 + 54306448 54306743 AluSg4 309 + 0 294 106552 28 1 0 266 chain 13613 chrX 155270560 + 54307014 54307270 L1PA16 3655 + 3391 3619 145924 111 1 0 60 69 42 15 chain 8468 chrX 155270560 + 54369989 54370085 U6 107 + 11 107 168470 96 chain 116630 chrX 155270560 + 54391307 54393031 L1PA8A 6298 + 4868 6291 32253 58 319 0 21 8 22 73 3 8 383 4 3 52 1 0 92 0 1 710 chain 24735 chrX 155270560 + 54398480 54398766 AluY 311 + 11 297 106246 286 chain 4684 chrX 155270560 + 54405354 54405414 LTR10E 629 + 570 629 198704 52 1 0 7 chain 24192 chrX 155270560 + 54406642 54406940 AluY 311 + 8 301 109262 115 0 3 8 13 5 162 chain 15135 chrX 155270560 + 54407955 54408143 MER51A 677 - 445 677 140961 12 0 44 176 chain 6737 chrX 155270560 + 54417026 54417099 MLT1F2 592 + 503 576 179423 73 chain 26571 chrX 155270560 + 54421556 54421854 AluSp 311 - 13 311 97755 298 chain 7672 chrX 155270560 + 54422128 54422229 MSTA 426 - 48 169 173087 59 3 23 39 chain 22166 chrX 155270560 + 54443652 54443966 L1PA16 3655 + 3306 3603 119517 272 3 0 7 11 0 7 3 0 11 chain 5519 chrX 155270560 + 54486339 54486404 MER41B 635 + 481 547 189854 30 0 1 35 chain 7544 chrX 155270560 + 54500048 54500135 MER2 342 + 135 222 173905 87 chain 93828 chrX 155270560 + 54513878 54516476 L1PA15 4387 + 3017 4356 38405 160 1 0 17 4 6 39 955 2 16 1 2 15 1 0 35 0 1 92 0 1 327 0 4 79 0 2 76 9 7 15 301 0 20 1 0 82 4 10 79 1 0 81 1 0 27 30 25 30 6 3 44 3 1 14 5 0 27 chain 26566 chrX 155270560 + 54527271 54527578 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chrX 155270560 + 54871335 54871797 MER41A 554 - 88 554 75834 14 0 3 11 1 0 5 4 5 297 6 7 124 chain 205413 chrX 155270560 + 54872041 54874658 L1PA7 6471 + 0 6453 18830 86 10 1050 116 0 19 538 17 18 38 1 2 80 0 4 10 0 15 289 1 0 163 0 2759 7 6 1 426 1 0 238 8 11 266 0 1 316 chain 16182 chrX 155270560 + 54877061 54877251 L1PA7 6471 + 6261 6451 137811 190 chain 12541 chrX 155270560 + 54879039 54879193 MER41A 554 - 1 155 150078 154 chain 534613 chrX 155270560 + 54880378 54886534 L1PA4 6152 - 14 6152 3638 551 1 0 1633 1 0 1639 1 0 387 0 1 477 3 10 7 5 0 692 0 1 164 1 0 40 4 0 380 14 0 156 chain 217149 chrX 155270560 + 54886534 54889072 L1PA4 6152 - 368 2909 18046 2276 0 1 245 0 2 17 chain 174892 chrX 155270560 + 54889072 54891390 L1P1 4361 + 1200 3241 21446 29 0 2 178 1 6 219 0 1 329 5 6 431 0 1 14 0 1 402 289 0 201 0 1 220 chain 24060 chrX 155270560 + 54890695 54890967 AluY 311 + 38 311 109980 94 0 1 178 chain 370179 chrX 155270560 + 54905295 54909645 L1P1 4361 - 20 4360 11091 12 2 1 23 1 0 155 1 0 2781 0 1 117 55 55 383 0 2 51 1 0 25 1 0 34 7 0 127 1 0 573 chain 55508 chrX 155270560 + 54910911 54911531 L1PA4 6152 - 1 629 55412 532 0 8 88 chain 21739 chrX 155270560 + 54922724 54923011 L1PA16 3655 - 66 349 121245 10 4 1 168 1 0 104 chain 24159 chrX 155270560 + 54930841 54931167 L1PA16 3655 + 3252 3578 109437 34 8 6 54 0 1 67 1 2 162 chain 77325 chrX 155270560 + 54931346 54932198 L1PA3long 6157 + 5304 6157 44819 726 0 1 126 chain 11310 chrX 155270560 + 54932257 54932429 L1MA3 4352 + 4139 4311 155025 50 1 2 43 0 3 23 2 0 22 1 0 6 1 0 23 chain 28811 chrX 155270560 + 54934543 54934961 L1PA8 5853 + 5437 5852 89835 127 1 0 44 2 0 62 21 23 47 2 1 12 10 9 90 chain 122644 chrX 155270560 + 54934984 54936349 L1PA3long 6157 + 4782 6156 30181 54 4 12 267 0 1 1040 chain 201173 chrX 155270560 + 54943950 54946177 L1PA3long 6157 + 3925 6157 19127 19 0 1 46 0 2 647 0 1 1182 0 1 333 chain 352440 chrX 155270560 + 54964807 54968830 L1PA4 6152 + 2116 6152 11538 270 0 4 160 0 1 265 3 0 240 0 1 629 1 3 644 0 1 703 0 1 115 1 0 322 1 0 4 0 1 558 0 1 97 0 6 10 chain 99281 chrX 155270560 + 54993812 54994906 L1PA3long 6157 + 5055 6149 36954 1094 chain 292931 chrX 155270560 + 54996772 55000000 L1PA3long 6157 - 0 3229 13827 76 0 1 2084 0 1 575 2 0 466 0 1 25 chain 24200 chrX 155270560 + 55000000 55000274 L1P1 4361 - 1445 1719 109209 231 1 0 4 0 1 38 chain 78554 chrX 155270560 + 55000624 55001673 L1PB2 3958 + 2809 3838 44238 115 1 0 384 2 0 52 1 0 3 1 0 11 4 0 61 22 16 166 1 0 64 1 0 72 2 0 22 1 0 63 chain 3753 chrX 155270560 + 55061125 55061166 MLT2A2 560 - 0 41 211101 41 chain 68130 chrX 155270560 + 55062239 55062986 L1PA4 6152 - 1507 2254 49151 747 chain 136595 chrX 155270560 + 55062986 55064493 L1PA4 6152 + 4642 6151 26716 1190 0 1 313 0 1 4 chain 5494 chrX 155270560 + 55065848 55065918 L1MB3 1562 + 1206 1276 190101 70 chain 27755 chrX 155270560 + 55066573 55066908 L1PA5 6144 - 1 333 93849 8 5 0 87 0 1 52 0 1 183 chain 140232 chrX 155270560 + 55068333 55071003 L1PB1 5432 + 3308 5399 26109 80 0 1 325 8 7 94 292 3 172 8 9 92 0 3 228 0 6 311 17 21 123 0 1 13 3 2 18 318 0 129 8 33 57 46 47 20 13 11 24 1 0 7 1 0 13 8 20 41 1 0 18 1 0 44 1 0 15 3 0 12 7 0 18 13 10 10 2 0 24 1 0 23 1 0 6 chain 25729 chrX 155270560 + 55068840 55069115 AluYa5 310 + 35 310 101170 275 chain 535511 chrX 155270560 + 55073374 55079373 L1PA4 6152 - 12 6149 3513 431 0 11 400 0 103 482 0 11 1524 1 0 3037 0 14 124 chain 487473 chrX 155270560 + 55093493 55099947 L1PA7 6471 - 3 6470 7456 158 1 2 90 10 12 474 0 2 95 12 8 14 1 0 308 0 7 32 1 12 184 0 1 1047 15 11 175 0 1 319 7 12 63 0 1 152 3 4 190 5 8 453 0 1 272 26 11 649 70 67 43 1 0 78 0 1 127 24 7 171 9 30 253 22 7 125 0 1 48 71 74 68 6 5 143 17 18 20 4 2 5 3 0 148 64 79 4 0 1 174 chain 187624 chrX 155270560 + 55109245 55111430 L1P2 5180 - 917 3113 20280 1549 0 5 9 14 8 107 0 13 51 1 0 454 chain 63025 chrX 155270560 + 55111489 55112192 L1PA3long 6157 + 5453 6157 51432 166 0 1 537 chain 90217 chrX 155270560 + 55131468 55132478 L1PA5 6144 - 14 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THE1B 368 + 0 368 122936 27 0 41 98 7 6 19 20 18 82 3 0 15 14 1 61 chain 42007 chrX 155270560 + 55200953 55201459 L1PA7 6471 - 12 517 66614 145 7 6 354 chain 6256 chrX 155270560 + 55206665 55206737 tRNA-Gln-CAA_ 72 + 0 72 183125 72 chain 46847 chrX 155270560 + 55218974 55219579 PRIMA4_LTR 623 - 0 623 61347 56 6 21 46 1 0 44 0 1 71 0 2 76 1 0 43 1 2 21 0 1 239 chain 191210 chrX 155270560 + 55219609 55222561 MER4-int 2692 - 16 2687 19941 152 6 5 32 0 3 254 1 0 93 2 0 243 11 10 65 1 0 62 3 5 138 11 12 25 1 2 6 18 0 7 0 2 35 0 1 55 3 4 53 1 18 54 5 9 65 5 8 57 12 15 84 1 0 92 0 2 199 3 1 40 0 4 47 2 3 28 0 2 87 0 1 48 0 9 28 308 0 73 0 2 321 1 0 16 1 0 63 2 0 26 1 0 5 chain 65216 chrX 155270560 + 55224908 55225637 L1PA3long 6157 - 0 729 50464 729 chain 5773 chrX 155270560 + 55227917 55227988 MER4B 649 + 505 576 187417 71 chain 12465 chrX 155270560 + 55237000 55237225 L1MC2 1988 - 634 866 150397 32 22 32 10 9 8 75 8 6 69 chain 40545 chrX 155270560 + 55237257 55237900 MER51A 677 + 0 661 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49 0 1 106 0 1 187 7 9 55 7 11 32 5 4 87 1 0 4 chain 265151 chrX 155270560 + 55267748 55270712 L1PA4 6152 + 3186 6151 15433 113 1 0 2715 0 1 116 0 1 19 chain 135687 chrX 155270560 + 55270729 55272570 L1PA10 4194 + 2280 4129 26897 7 1 0 104 0 2 288 5 6 59 0 1 364 6 7 107 0 1 6 3 0 5 9 12 19 4 0 99 0 1 123 0 1 155 8 7 14 1 10 163 3 2 4 0 1 268 3 0 13 chain 10299 chrX 155270560 + 55292894 55293045 MER41A 554 + 400 549 159139 86 1 0 39 8 7 17 chain 329095 chrX 155270560 + 55295537 55299357 L1PA4 6152 + 10 6143 12233 1024 1 0 398 0 2286 465 3 14 1105 5 9 79 0 13 740 chain 37855 chrX 155270560 + 55302874 55303327 MER41A 554 + 13 467 72337 373 0 1 80 chain 10932 chrX 155270560 + 55303558 55303713 L1PA8 5853 - 0 153 156478 93 1 0 6 12 11 43 chain 57059 chrX 155270560 + 55303713 55304577 L1P3 4156 - 2867 3750 54494 47 1 0 4 0 1 11 1 0 4 0 1 291 26 14 214 45 80 124 13 7 51 7 9 25 chain 28371 chrX 155270560 + 55317834 55318145 AluYa5 310 - 5 310 91694 9 5 0 170 1 0 126 chain 322129 chrX 155270560 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6143 15389 143 0 5 214 0 1 1271 0 1 79 0 2 734 0 1 584 chain 285074 chrX 155270560 + 55383612 55387706 L1PA10 4194 + 181 4137 14348 7 2 0 10 3 0 9 2 0 9 2 1 4 3 0 11 2 0 9 1 0 9 1 0 20 3 1 15 1 0 8 37 12 7 1 0 22 2 0 21 1 0 7 51 47 74 2 0 252 1 5 207 8 9 92 0 8 702 2 0 6 5 8 53 4 8 83 0 2 69 0 1 131 4 0 373 0 1 134 3 5 18 14 0 12 0 7 4 0 1 238 4 5 32 42 13 168 37 38 382 80 10 418 0 1 136 3 0 21 chain 3900 chrX 155270560 + 55392543 55392588 Tigger4a 237 + 192 237 208857 45 chain 53500 chrX 155270560 + 55397645 55398297 SVA_A 1864 - 12 1191 56680 525 45 572 82 chain 41701 chrX 155270560 + 55411145 55411640 MER9a1 513 - 0 513 67025 57 4 0 189 1 23 244 chain 58576 chrX 155270560 + 55417344 55418275 L1PB2 3958 + 2915 3838 53658 9 1 0 190 27 0 7 1 28 15 0 1 142 10 8 40 25 19 19 11 11 35 2 0 12 2 0 18 0 4 138 12 15 55 1 0 64 10 8 21 2 1 55 0 1 7 chain 511878 chrX 155270560 + 55422956 55429092 L1PA5 6144 + 3 6139 5992 433 6 5 119 17 10 235 23 6 197 1 0 829 0 4 1513 6 7 1084 0 1 234 0 2 391 0 1 409 0 1 58 8 16 96 0 8 319 1 6 5 5 0 147 chain 5233 chrX 155270560 + 55430074 55430139 L1PA4 6152 + 6015 6080 192696 65 chain 5710 chrX 155270560 + 55430141 55430207 L1PA4 6152 + 6080 6146 188008 66 chain 171228 chrX 155270560 + 55447316 55449242 L1PA4 6152 - 10 1935 21910 1477 1 0 448 chain 533908 chrX 155270560 + 55452955 55459111 L1PA4 6152 + 6 6151 3717 137 15 0 317 6 0 120 1 0 164 1 0 2417 5 4 344 0 1 428 0 2 208 0 6 511 1 0 161 6 7 468 0 3 73 0 1 274 0 1 356 1 0 142 chain 512838 chrX 155270560 + 55469674 55475837 L1PA6 6164 + 0 6156 5897 157 32 33 317 5 14 19 0 1 563 0 8 139 1 0 476 0 1 80 6 3 515 32 0 858 5 6 86 0 5 202 11 5 220 0 1 191 2 1 845 0 5 402 0 1 149 5 8 845 chain 4561 chrX 155270560 + 55562028 55562090 L1P4e 1373 - 71 131 200095 25 2 0 35 chain 54059 chrX 155270560 + 55570366 55570976 L1P1 4361 - 33 641 56320 23 1 0 155 1 0 430 chain 62697 chrX 155270560 + 55570976 55571678 L1PA3long 6157 + 5455 6157 51594 702 chain 100691 chrX 155270560 + 55578705 55579887 L1P2 5180 - 2204 3385 36585 301 1 0 880 chain 34124 chrX 155270560 + 55579889 55580276 L1P1 4361 + 3864 4250 77444 286 1 0 100 chain 17390 chrX 155270560 + 55582972 55583272 THE1C 375 + 0 363 134538 44 4 5 27 7 8 24 0 50 28 0 1 4 48 58 114 chain 5664 chrX 155270560 + 55588562 55588635 MLT1F2 592 + 519 592 188447 73 chain 280796 chrX 155270560 + 55593387 55597680 L1PA10 4194 + 223 4161 14598 9 2 0 9 1 0 9 1 0 11 82 53 20 3 1 21 1 0 5 4 3 6 1 0 10 1 0 15 9 8 80 10 8 386 0 3 6 2 0 7 4 8 6 4 0 78 0 1 375 0 1 5 1 0 60 5 2 46 1 0 4 318 0 370 1 2 47 17 18 219 5 8 66 10 6 260 24 26 128 0 1 46 0 4 193 2 1 171 1 5 86 1 0 108 0 1 158 9 1 83 2 1 71 0 1 144 0 1 229 1 8 174 3 0 34 2 1 10 chain 82076 chrX 155270560 + 55612491 55613385 L1PA2 6032 - 8 902 42731 894 chain 439128 chrX 155270560 + 55626961 55632760 L1PA8 5853 - 0 5803 9078 93 1 0 19 2 1 51 1 0 10 2 1 116 1 0 47 1 0 506 0 2 153 6 5 25 0 1 225 0 1 136 0 1 52 0 2 103 7 1 85 1 0 8 0 1 8 0 5 692 0 1 482 0 3 5 9 6 65 3 7 44 3 2 227 5 6 19 0 1 346 0 2 62 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25785 chrX 155270560 + 55676375 55676740 L1PA8 5853 + 5494 5853 100936 70 2 1 43 2 0 70 2 1 14 4 3 44 2 1 19 1 0 23 0 1 69 chain 31483 chrX 155270560 + 55678559 55678935 LTR3 431 + 0 416 81670 76 0 38 187 0 1 37 0 1 76 chain 308184 chrX 155270560 + 55690852 55698584 L1PA7 6471 - 2 3823 13079 6 7 0 6 0 5 320 1 2 511 1 0 633 2 1 320 3906 0 328 0 1 451 1 0 247 0 1 768 1 2 154 5 1 64 chain 70663 chrX 155270560 + 55694765 55695686 L1PA7 6471 - 1 922 48079 13 1 0 149 0 1 36 0 2 5 11 9 615 0 1 18 2 1 71 chain 71886 chrX 155270560 + 55695687 55696565 L1PA7 6471 - 924 1802 47526 878 chain 331615 chrX 155270560 + 55703518 55707587 L1PA6 6164 - 8 4090 12144 313 11 13 217 0 2 170 0 1 321 0 1 82 7 8 225 0 3 22 0 1 94 9 4 43 0 12 14 11 4 903 0 1 753 0 1 4 1 0 249 2 0 207 0 1 114 0 2 297 chain 526480 chrX 155270560 + 55707589 55713611 L1PA3long 6157 - 0 6153 4552 225 1 0 553 0 1 1688 0 1 209 8 9 73 0 3 224 1 0 852 1 0 863 2 1 551 0 128 601 23 24 147 chain 163503 chrX 155270560 + 55713617 55715693 L1P2 5180 - 3100 5178 22876 21 11 14 197 0 1 175 0 1 286 0 2 141 1 0 311 0 1 136 2 1 6 1 0 272 1 0 105 1 2 165 1 0 49 1 0 45 1 0 147 chain 287358 chrX 155270560 + 55715821 55719457 L1PA7 6471 + 2808 6457 14196 252 1 2 34 0 4 175 2 1 18 17 18 264 10 6 350 0 2 73 1 2 198 0 1 65 0 1 211 4 5 234 0 1 897 0 2 94 0 1 30 0 1 527 1 0 8 0 2 170 chain 8625 chrX 155270560 + 55722922 55723035 THE1D 372 - 249 365 167613 5 2 0 38 0 5 68 chain 504012 chrX 155270560 + 55728558 55735020 L1PA7 6471 + 0 6470 6601 227 2 17 11 15 0 29 15 16 103 1 2 109 1 0 272 0 1 366 3 1 5 0 2 180 0 1 4 1 0 51 5 6 216 17 7 101 1 2 430 1 2 104 1 0 112 0 1 71 1 4 143 0 2 546 0 1 143 0 1 4 1 0 193 0 1 16 1 0 93 0 2 5 2 0 279 0 1 209 0 1 113 5 6 209 2 0 301 0 3 897 0 2 79 0 1 448 0 1 304 2 1 12 chain 17403 chrX 155270560 + 55735347 55735634 L1PA8 5853 - 3 288 134495 89 2 1 19 5 4 49 1 0 5 22 21 13 0 4 35 2 0 45 chain 38299 chrX 155270560 + 55738352 55738843 MER41A 554 - 55 554 71708 26 0 5 15 1 2 200 0 2 249 chain 167158 chrX 155270560 + 55774261 55776499 SVA_D 2077 + 0 2077 22380 19 5 0 819 1 0 60 338 200 115 1 0 175 0 1 585 16 0 85 1 0 18 chain 17948 chrX 155270560 + 55775235 55775490 SVA_F 1814 + 1013 1219 132985 172 50 0 29 0 1 4 chain 13986 chrX 155270560 + 55791911 55792068 L1PA2 6032 - 61 217 144621 97 1 0 59 chain 5373 chrX 155270560 + 55792068 55792133 L1PA2 6032 + 5966 6032 191272 34 0 1 31 chain 515331 chrX 155270560 + 55795354 55801477 L1PA6 6164 - 2 6159 5632 9 8 0 136 13 13 411 0 10 1215 0 4 231 0 7 570 3 5 102 0 1 196 9 13 49 0 1 36 0 5 292 2 0 166 2 0 238 0 4 1173 0 1 450 0 17 297 2 1 257 20 11 236 chain 120725 chrX 155270560 + 55805738 55807914 L1PB1 5432 + 3796 5409 30783 169 1 0 643 1 5 13 3 0 380 0 1 92 542 7 8 1 0 24 1 0 9 16 11 9 2 0 55 0 2 7 7 6 44 1 0 15 24 12 19 12 9 10 2 0 24 6 5 16 1 0 13 1 0 5 chain 21547 chrX 155270560 + 55811361 55811591 L1PA3long 6157 - 1081 1311 120909 230 chain 95998 chrX 155270560 + 55811591 55812661 L1PA3long 6157 + 5075 6157 37822 84 0 5 54 0 1 88 0 5 708 0 1 136 chain 23916 chrX 155270560 + 55814858 55815181 LTR7B 505 - 64 505 110834 89 0 41 22 1 0 37 13 81 53 0 10 108 chain 48600 chrX 155270560 + 55816617 55817255 HERVH-int 3825 - 0 639 60038 141 0 2 114 3 2 4 0 1 301 18 17 57 chain 7264 chrX 155270560 + 55819731 55819838 LTR7B 505 - 0 106 175692 51 14 13 42 chain 518026 chrX 155270560 + 55832525 55838609 L1PA4 6152 - 16 6146 5379 42 0 10 296 5 20 2106 0 1 1575 18 19 429 6 4 6 0 2 638 1 5 49 0 1 777 0 14 136 chain 520064 chrX 155270560 + 55853532 55859653 L1PA4 6152 + 10 6131 5152 1042 11 11 1119 0 2 16 0 2 1691 5 0 1407 0 1 830 chain 61816 chrX 155270560 + 55860652 55861350 L1PA3long 6157 + 5458 6157 51986 360 0 1 338 chain 75284 chrX 155270560 + 55861657 55862641 LTR5B 1012 - 14 1012 45877 381 32 34 94 1 0 74 5 5 45 1 0 228 0 14 123 chain 152969 chrX 155270560 + 55870090 55872040 L1PA8 5853 + 3827 5853 24236 45 0 1 310 0 1 146 5 4 7 0 1 79 0 2 143 0 1 42 1 6 208 0 1 185 2 0 216 0 8 74 1 28 229 2 1 43 2 0 32 25 61 59 1 0 93 chain 540264 chrX 155270560 + 55872193 55878343 L1PA3long 6157 - 0 6151 2779 266 1 0 577 0 4 228 1 0 53 14 0 671 0 4 828 0 5 807 0 5 9 8 4 146 0 1 342 0 1 1495 0 1 704 chain 84482 chrX 155270560 + 55884788 55885878 THE1A-int 1579 - 5 1579 41725 177 0 480 130 0 1 160 0 18 21 16 1 410 0 1 5 2 1 43 2 0 5 0 2 119 chain 24659 chrX 155270560 + 55885878 55886231 THE1A 353 - 0 353 106675 39 7 8 108 1 0 67 11 12 9 2 1 109 chain 58472 chrX 155270560 + 55889953 55890866 L1PA13 3608 + 2597 3482 53712 188 1 0 33 6 8 258 13 6 41 5 7 22 10 9 43 19 23 38 2 0 62 2 1 25 16 0 28 1 0 7 2 0 47 2 0 5 2 0 18 1 0 16 chain 48188 chrX 155270560 + 55892937 55893491 LTR6B 557 - 0 557 60331 22 0 1 33 0 1 4 0 1 135 0 1 312 1 0 47 chain 27391 chrX 155270560 + 55894649 55895054 LTR7 482 + 0 477 95001 50 27 65 109 5 37 44 0 1 113 13 14 44 chain 59469 chrX 155270560 + 55911467 55912137 L1PA3long 6157 - 0 689 53131 50 1 5 71 0 1 289 0 14 259 chain 365856 chrX 155270560 + 55912154 55916566 L1PA5 6144 - 18 6144 11209 94 1 0 140 6 5 410 0 4 176 4 5 254 0 3 264 0 1 728 1 2 347 1 2 9 1 0 120 0 3 745 67 1769 524 0 1 520 chain 405129 chrX 155270560 + 55922528 55927578 L1PA7 6471 + 0 6467 9940 367 43 44 486 0 7 122 0 1 168 0 16 130 0 1 4 1 0 356 0 2 64 1 6 6 4 0 705 1 0 5 0 1 10 0 2 134 1 2 64 0 1378 955 0 2 274 0 1 161 0 1 145 2 1 38 0 4 242 0 3 20 0 1 209 0 1 322 4 0 6 chain 3732 chrX 155270560 + 55938530 55938575 MER5A 189 + 24 69 211427 45 chain 6684 chrX 155270560 + 55945561 55945658 MLT1C-int 1263 - 147 244 179803 42 1 2 18 1 0 35 chain 10622 chrX 155270560 + 55949075 55949250 L1PA11 4918 + 4335 4502 157724 58 2 1 13 2 0 18 2 0 50 2 0 7 7 6 14 chain 5090 chrX 155270560 + 55953656 55953737 MER20 218 - 72 157 194176 55 8 12 18 chain 365763 chrX 155270560 + 55954798 55959327 L1PA7 6471 - 1 4530 11214 243 12 5 268 6 5 321 0 4 597 30 17 52 4 3 259 1 0 863 1 0 91 19 9 126 0 5 18 2 24 31 1 0 26 1 0 403 0 4 801 0 1 353 chain 527538 chrX 155270560 + 55962824 55968961 L1PA4 6152 + 1 6151 4446 469 0 1 54 1 2 1289 0 1 5 1 0 1136 1 0 224 0 1 506 6 5 654 0 4 365 1 6 581 0 4 694 12 11 138 chain 129879 chrX 155270560 + 55970477 55971914 L1PA3long 6157 - 2214 3652 28094 587 0 1 850 chain 193180 chrX 155270560 + 55971914 55974080 L1PA3long 6157 + 3987 6157 19755 367 0 4 1799 chain 376224 chrX 155270560 + 56013656 56018078 L1PA4 6152 - 22 6146 10876 2402 0 1 45 1 0 548 1 4 309 4 1706 519 11 8 5 0 3 44 4 0 63 2 0 35 0 1 166 0 2 263 chain 73684 chrX 155270560 + 56024202 56025163 LTR5_Hs 974 - 0 974 46690 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 122 1 0 39 5 13 115 chain 30479 chrX 155270560 + 56039546 56039931 THE1C-int 1605 + 1204 1592 83472 318 0 1 5 6 8 56 chain 44024 chrX 155270560 + 56040321 56040980 L1PA11 4918 + 3924 4567 64176 380 4 6 19 0 2 62 2 1 13 7 5 60 2 0 17 1 0 15 48 35 15 1 0 13 chain 37276 chrX 155270560 + 56050892 56051368 LTR2B 499 - 0 499 73124 55 1 0 274 0 26 123 0 1 6 3 0 14 chain 38842 chrX 155270560 + 56058150 56058652 LTR2B 499 - 0 499 70960 42 14 13 282 0 1 81 1 0 59 0 1 6 3 0 14 chain 16750 chrX 155270560 + 56067873 56068100 L1PA11 4918 - 2628 2857 136255 4 1 0 37 0 2 15 1 2 169 chain 516510 chrX 155270560 + 56073700 56079713 L1PA4 6152 - 0 6152 5529 155 0 1 560 1 0 1036 0 2 1690 5 0 8 1 6 1794 6 135 66 7 0 119 1 0 153 0 1 271 0 1 80 5 6 26 0 13 29 chain 34078 chrX 155270560 + 56082875 56083246 L1PA2 6032 + 5662 6032 77499 355 1 0 15 chain 431801 chrX 155270560 + 56084773 56090316 L1PA7 6471 - 1 5742 9275 13 1 0 136 8 0 12 16 11 178 6 7 439 1 2 51 2 0 272 5 4 291 0 1 266 3 170 92 0 1 96 9 10 220 1 0 195 8 0 166 0 1 214 0 29 103 1 0 4 1 2 274 0 1 291 6 9 196 0 3 78 38 35 268 27 1 10 1 6 315 12 33 729 0 1 20 0 4 88 0 1 89 0 8 237 0 4 54 chain 44432 chrX 155270560 + 56096267 56096846 L1PA8 5853 + 5277 5852 63657 287 1 0 44 2 0 31 0 3 36 2 1 13 10 9 39 2 1 19 1 0 92 chain 22179 chrX 155270560 + 56096886 56097200 L1PA8A 6298 + 5971 6289 119445 208 3 0 5 24 31 74 chain 16593 chrX 155270560 + 56102390 56102582 L1PA3long 6157 - 147 339 136688 192 chain 457191 chrX 155270560 + 56102583 56107779 L1PA3long 6157 - 8 5203 8506 1784 0 1 1327 0 1 428 6 0 1443 8 11 200 chain 16189 chrX 155270560 + 56117508 56117891 THE1C 375 + 0 375 137789 13 2 0 25 79 79 69 69 63 126 chain 19235 chrX 155270560 + 56123968 56124180 L1PA3long 6157 - 15 228 129425 132 0 1 80 chain 394095 chrX 155270560 + 56129465 56134285 L1P2 5180 - 344 5176 10315 743 1 0 4 0 1 400 1 0 198 7 5 191 1 2 579 0 1 322 3 11 60 4 1 199 8 0 330 0 1 116 3 4 245 3 8 617 0 15 268 1 0 262 8 6 53 1 0 44 6 5 26 1 0 115 chain 91892 chrX 155270560 + 56137828 56138920 L1PA7 6471 + 5376 6467 39000 223 1 0 22 1 0 82 1 0 626 0 2 136 chain 161783 chrX 155270560 + 56162390 56164190 L1PA3long 6157 + 4352 6152 23093 299 4 0 43 0 1 1300 0 3 154 chain 79067 chrX 155270560 + 56172201 56173156 L1PA7 6471 + 5510 6470 44023 116 0 6 676 7 0 6 2 8 148 chain 4954 chrX 155270560 + 56179957 56180014 L1PA5 6144 - 2027 2084 192876 57 chain 172696 chrX 155270560 + 56180014 56182047 L1PA5 6144 + 4133 6143 21742 188 1 0 4 1 2 331 1 0 94 22 0 1229 1 6 6 1 0 5 4 0 145 chain 493927 chrX 155270560 + 56183020 56189350 L1PA4 6152 - 13 6152 7176 158 1 8 154 508 185 553 0 1 722 0 4 1189 2 1 456 6 6 966 0 122 396 3 1 661 11 12 544 chain 19738 chrX 155270560 + 56183347 56183567 L1PA5 6144 + 5664 5884 127989 220 chain 19595 chrX 155270560 + 56183569 56183813 L1PA5 6144 + 5885 6129 128398 244 chain 35724 chrX 155270560 + 56191184 56191570 L1HS 6032 - 0 386 75235 386 chain 31405 chrX 155270560 + 56194935 56195305 L1PA5 6144 - 2 373 81806 151 1 2 218 chain 27852 chrX 155270560 + 56197812 56198532 L1PA5 6144 - 4 725 7955 138 0 1 582 chain 510314 chrX 155270560 + 56198553 56204642 L1PA4 6152 - 12 6112 6138 132 10 11 176 0 1 515 0 7 431 0 1 514 0 4 1682 1 0 387 0 1 144 11 6 931 0 1 738 14 15 403 chain 208386 chrX 155270560 + 56204643 56210030 L1PA5 6144 - 725 6144 7955 147 0 1 756 16 9 347 0 1 372 0 1 110 2 1 244 0 14 172 7 20 30 2 5 19 7 6 127 0 1 695 2 1 168 0 1 4 1 0 149 0 1 200 2 1 7 0 3 626 49 40 1006 3 17 117 chain 535837 chrX 155270560 + 56210322 56216463 L1PA3long 6157 + 6 6157 3469 1009 1 2 1103 1 0 859 0 1 187 0 2 40 0 1 1120 0 4 340 1 2 602 0 1 28 1 0 178 0 1 83 12 0 9 0 12 567 chain 492043 chrX 155270560 + 56220528 56226661 L1PA6 6164 + 0 6151 7266 236 0 2 78 0 4 198 0 2 47 1 0 44 0 2 840 0 2 250 0 1 4 4 3 265 0 1 355 20 6 379 0 1 56 0 1 130 1 2 176 4 9 91 3 0 4 0 1 82 5 10 388 0 1 32 1 0 392 0 1 401 1 0 494 0 1 267 0 1 153 7 10 21 5 10 453 2 1 243 chain 120184 chrX 155270560 + 56247869 56249549 LTR12C 1709 - 0 1709 30993 84 5 4 158 1 0 50 0 3 182 36 5 90 0 47 158 0 1 87 6 5 136 41 0 82 11 12 132 11 19 34 0 1 40 6 49 330 chain 17848 chrX 155270560 + 56274540 56274749 L1PA5 6144 + 5932 6143 133247 198 1 3 10 chain 198361 chrX 155270560 + 56278961 56283121 L1MA2 4263 - 158 3107 19329 35 0 1 11 7 0 93 11 9 90 4 3 57 21 18 62 0 13 51 1 0 77 6 2 156 0 1 100 16 17 139 6 6 206 17 20 29 2 0 5 0 2 6 379 5 44 851 14 189 1 0 33 0 2 77 0 1 267 12 14 10 0 15 55 9 10 42 0 2 20 0 1 7 0 4 121 1 0 61 5 8 173 0 3 47 2 1 131 8 5 40 0 1 36 0 7 9 30 35 34 42 0 82 1 0 54 0 1 79 chain 28646 chrX 155270560 + 56293660 56294010 THE1A 353 - 0 353 90531 155 0 3 195 chain 14696 chrX 155270560 + 56314919 56315125 Tigger1a_Art 216 - 0 205 142278 109 2 1 57 2 1 18 0 1 18 chain 396115 chrX 155270560 + 56318954 56323507 L1PA4 6152 + 1562 6130 10237 1323 4 0 298 1 0 1166 0 12 40 0 2 607 0 1 267 0 4 284 2 1 460 3 5 98 chain 127539 chrX 155270560 + 56332860 56334435 L1PA8 5853 - 1 1593 28685 91 27 25 27 0 1 16 1 0 13 2 1 68 2 0 48 1 0 205 4 0 273 0 2 7 1 0 64 0 2 221 0 2 5 0 21 412 7 8 80 chain 13588 chrX 155270560 + 56337559 56337822 L1PB1 5432 + 5167 5421 146021 53 2 1 16 1 0 44 1 0 20 17 7 14 8 18 6 2 0 24 1 0 22 1 0 12 1 0 10 1 0 7 chain 5106 chrX 155270560 + 56338858 56338918 MLT1A0 366 - 50 110 194026 60 chain 367454 chrX 155270560 + 56346113 56350412 L1P1 4361 + 1 4321 11170 37 0 16 421 0 1 979 4 5 182 16 17 1044 0 1 507 0 1 661 0 2 276 1 0 154 1 0 16 chain 4274 chrX 155270560 + 56350897 56351382 MER11B 1079 + 0 482 51257 101 1 0 159 3 0 31 4 0 176 1 6 9 chain 529960 chrX 155270560 + 56351398 56357572 L1PA3long 6157 - 2 6150 4190 129 11 12 706 0 2 392 0 1 278 1 0 623 28 0 505 0 1 718 9 7 67 5 0 8 1 6 310 19 19 2364 chain 4644 chrX 155270560 + 56357572 56358099 MER11B 1079 + 482 1008 51257 78 41 39 104 0 7 56 1 3 8 8 0 231 chain 528368 chrX 155270560 + 56362080 56368222 L1PA4 6152 - 1 6152 4367 841 8 9 1547 0 1 575 0 1 862 0 2 1092 0 1 42 0 1 443 1 2 246 5 6 480 chain 55331 chrX 155270560 + 56374317 56375372 L1PA6 6164 - 5 677 55503 185 383 0 149 1 0 327 0 1 10 chain 13022 chrX 155270560 + 56374531 56374694 L1PA6 6164 - 218 382 148172 5 0 1 158 chain 13389 chrX 155270560 + 56374695 56374872 L1PA6 6164 - 2 179 146754 139 1 0 5 1 2 31 chain 222022 chrX 155270560 + 56375406 56378107 L1PA5 6144 - 8 2816 17758 140 2 4 686 0 1 6 1 0 4 0 1 106 1 5 147 5 18 673 0 4 371 0 1 37 0 1 438 1 82 83 chain 31402 chrX 155270560 + 56378618 56378970 L1PA2 6032 - 6 358 81813 352 chain 511751 chrX 155270560 + 56379063 56385205 L1PA4 6152 - 9 6148 6004 132 6 9 689 13 14 1055 3 4 7 1 0 456 1 0 4 0 1 82 2 1 235 1 0 214 5 6 56 0 1 11 0 1 390 0 1 438 5 6 119 0 1 585 10 0 451 3 2 1168 chain 288551 chrX 155270560 + 56388889 56392914 L1PB1 5432 - 35 4010 14121 5 1 0 22 1 0 23 3 1 14 8 5 14 9 0 9 1 0 8 2 0 15 1 0 45 1 0 15 2 1 53 27 20 9 1 0 24 34 3 5 0 3 50 16 16 408 7 0 19 2 0 5 12 18 88 29 30 271 1 0 139 26 11 62 3 1 249 2 0 108 4 16 78 0 4 367 0 6 263 0 3 294 1 2 10 0 1 47 0 1 38 3 0 180 1 6 6 0 1 675 12 11 92 6 3 5 0 3 94 chain 94358 chrX 155270560 + 56396251 56397321 L1PA3long 6157 - 0 1072 38245 154 1 0 357 2 5 556 chain 475052 chrX 155270560 + 56397323 56402709 L1PA3long 6157 + 768 6157 7881 286 0 1 1786 0 1 373 1 0 1426 1 0 307 0 1 429 0 1 773 0 1 4 chain 10345 chrX 155270560 + 56402774 56402904 MER4E 760 - 629 760 158923 110 1 2 19 chain 133942 chrX 155270560 + 56405922 56407647 SVA_C 1631 - 15 1631 27226 598 1 0 16 1 0 52 1 0 39 1 0 46 1 0 14 5 1 13 1 0 8 21 16 18 17 1 67 40 0 55 40 0 644 3 0 6 0 5 17 chain 998 chrX 155270560 + 56406842 56406881 SVA_C 1631 - 824 863 152596 39 chain 6272 chrX 155270560 + 56412408 56412486 MER84 505 - 427 505 182992 78 chain 511610 chrX 155270560 + 56414923 56421326 L1PA4 6152 - 9 6151 6014 172 2 0 8 0 1 70 1 0 120 4 5 268 0 1 196 0 4 560 4 0 108 0 1 535 0 2 19 0 1 190 0 1 595 1 0 121 1 0 74 3 4 312 0 1 823 304 45 12 0 1 1207 11 14 240 16 5 426 chain 229315 chrX 155270560 + 56424802 56427358 L1PA3long 6157 - 245 2802 17336 527 0 1 2029 chain 457768 chrX 155270560 + 56431402 56437917 L1PA7 6471 - 13 6471 8479 138 2 3 365 0 9 315 1 5 127 22 26 245 6 5 4 0 1 192 0 1 37 1 0 35 0 1 4 0 116 54 4 108 35 0 1 114 1 0 546 0 1 162 332 0 8 1 0 5 0 1 227 2 1 18 0 6 40 1 0 124 0 1 43 7 8 82 18 18 461 0 2 123 2 0 5 0 3 9 4 17 22 2 0 7 17 19 514 2 3 66 0 1 75 0 3 8 0 7 184 8 9 416 12 6 297 235 238 48 5 6 53 3 5 4 1 0 21 0 1 593 chain 175046 chrX 155270560 + 56446056 56448209 L1P1 4361 - 2274 4360 21453 178 61 10 111 17 1 1371 3 2 4 0 1 408 chain 498224 chrX 155270560 + 56450497 56456641 L1PA6 6164 - 2 6159 6944 679 0 3 589 0 1 210 1 0 6 13 14 230 7 8 89 1 0 15 0 3 277 4 0 112 1 0 382 14 15 339 0 1 855 1 2 432 1 5 136 10 12 894 1 3 845 chain 8044 chrX 155270560 + 56456658 56456767 L1PA13 3608 - 2666 2773 170788 44 1 0 14 1 0 49 chain 475906 chrX 155270560 + 56457634 56463090 L1PA3long 6157 - 0 5459 7860 141 3 8 13 5 0 1679 0 1 472 3 1 353 0 1 709 1 2 760 4 0 198 0 2 625 0 3 447 0 1 43 chain 478310 chrX 155270560 + 56463091 56468575 L1PA3long 6157 + 660 6151 7789 83 0 1 446 0 3 624 0 2 198 4 0 760 1 2 709 0 1 353 3 1 472 0 1 990 1 5 840 chain 70515 chrX 155270560 + 56469202 56470043 L1PA5 6144 + 5299 6143 48155 8 0 1 518 0 1 95 0 1 58 1 6 5 5 0 151 chain 52138 chrX 155270560 + 56475833 56476465 L1PA4 6152 - 1 634 57533 43 0 1 90 5 12 14 15 8 465 chain 89673 chrX 155270560 + 56477222 56478298 L1P1 4361 - 20 1097 39755 12 2 1 23 1 0 155 1 0 208 1 2 660 0 3 13 chain 40512 chrX 155270560 + 56478541 56479042 L1PA4 6152 - 5645 6146 68576 501 chain 47969 chrX 155270560 + 56479050 56479611 L1PA3long 6157 + 5346 5901 60508 41 0 2 504 8 0 8 chain 20035 chrX 155270560 + 56479620 56479859 L1PA3long 6157 + 5918 6157 127027 239 chain 43067 chrX 155270560 + 56481116 56481633 L1P1 4361 - 20 534 65341 12 2 1 23 1 0 155 1 0 323 chain 480947 chrX 155270560 + 56481880 56487681 L1PA3long 6157 - 245 6153 7695 533 0 1 3692 1 0 257 0 5 550 19 19 136 5 12 128 0 1 338 3 96 41 1 2 97 chain 4293 chrX 155270560 + 56499520 56499599 MLT1C 463 - 278 366 203322 40 18 27 21 chain 28527 chrX 155270560 + 56507998 56508303 AluYa5 310 - 5 310 91065 305 chain 5422 chrX 155270560 + 56508335 56508399 L1PA11 4918 - 443 507 190788 64 chain 7837 chrX 155270560 + 56509626 56509722 L1PA10 4194 - 756 852 172092 96 chain 482591 chrX 155270560 + 56515966 56522002 L1PA6 6164 - 16 6150 7640 132 0 6 6 17 11 166 0 1 514 1 0 143 0 14 31 1 30 291 1 3 53 0 1 21 9 40 647 4 0 516 0 1 215 0 1 115 0 1 4 1 2 403 0 5 14 1 2 55 0 3 78 8 9 459 4 13 341 5 7 24 8 0 288 1 0 391 1 4 279 3 0 55 1 0 4 0 1 113 7 8 27 1 0 33 1 0 46 0 9 250 1 0 17 6 8 223 chain 7174 chrX 155270560 + 56531593 56531682 L1PBa1 4058 + 2050 2138 176250 84 1 0 4 chain 142068 chrX 155270560 + 56531694 56533680 L1PBa1 4058 + 11 1993 25812 8 0 5 11 11 1 11 13 10 133 13 4 81 4 5 146 21 20 172 7 6 36 1 2 420 7 8 18 1 0 331 1 11 5 0 3 42 2 0 130 30 33 148 1 0 182 chain 459282 chrX 155270560 + 56534599 56540545 L1PA7 6471 + 510 6465 8433 67 12 9 22 1 0 6 21 22 106 0 5 243 5 5 118 0 2 137 17 36 105 0 3 363 10 14 387 55 11 300 22 24 25 0 2 71 0 1 156 1 5 13 1 0 315 0 1 12 0 4 124 9 13 6 4 0 306 12 16 264 5 0 54 0 1 113 3 0 5 0 1 197 0 1 92 0 9 1218 0 1 100 1 0 79 1 3 762 chain 5887 chrX 155270560 + 56540575 56540744 L1PB1 5432 + 5269 5416 186304 12 1 0 20 21 8 18 8 5 14 2 0 24 17 16 5 1 0 13 1 0 12 chain 286929 chrX 155270560 + 56547811 56551025 L1PA3long 6157 - 15 3231 14225 1247 0 1 1710 0 1 257 chain 161369 chrX 155270560 + 56551025 56552840 L1PA3long 6157 + 1117 2936 23100 746 16 19 808 0 1 245 chain 34305 chrX 155270560 + 56566476 56566855 L1PA4 6152 + 5611 5990 77201 379 chain 12456 chrX 155270560 + 56566855 56567003 L1PA4 6152 + 5991 6139 150436 148 chain 283494 chrX 155270560 + 56573659 56577179 L1P2 5180 + 4 3530 14435 146 1 0 9 36 35 53 1 0 267 0 1 48 1 0 224 0 15 16 27 10 137 0 6 53 0 1 223 17 16 176 1 0 133 0 6 137 1 0 601 4 2 45 0 2 324 0 1 839 chain 28540 chrX 155270560 + 56581692 56582088 MER57A1 433 + 2 396 91002 282 1 2 77 20 17 16 chain 4046 chrX 155270560 + 56588286 56588333 MADE1 96 + 49 96 206689 47 chain 548237 chrX 155270560 + 56607955 56614105 L1PA3long 6157 - 0 6153 1674 142 0 1 125 3 0 2262 2 6 855 0 1 1527 0 1 501 1 0 732 chain 499531 chrX 155270560 + 56618133 56624565 L1PA7 6471 - 4 6471 6859 289 1 8 110 0 11 293 6 11 6 5 0 118 1 4 299 41 0 362 5 1 283 0 4 161 0 1 754 7 82 58 0 1 113 0 2 395 0 3 324 55 19 22 2 3 502 14 12 119 0 2 322 0 4 8 0 2 358 0 4 178 3 7 719 8 0 7 9 17 52 11 5 159 1 16 12 4 1 6 12 0 218 chain 120115 chrX 155270560 + 56628048 56629612 THE1A-int 1579 - 0 1579 31022 217 1 12 126 7 8 96 9 11 294 3 4 53 2 1 608 0 1 119 4 4 25 chain 27847 chrX 155270560 + 56629612 56629963 THE1A 353 - 0 353 93538 243 1 0 42 0 3 65 chain 51350 chrX 155270560 + 56642141 56642766 LTR14B 630 - 0 630 58064 4 0 1 69 1 6 119 1 0 431 chain 73440 chrX 155270560 + 56643468 56644352 L1PA8A 6298 - 7 895 46818 105 0 1 692 1 4 86 chain 160076 chrX 155270560 + 56650419 56652440 L1PA8A 6298 + 4234 6290 23328 835 8 9 169 0 1 215 4 28 18 7 6 5 0 1 432 0 9 328 chain 519210 chrX 155270560 + 56656011 56662153 L1PA4 6152 - 1 6151 5240 483 0 1 192 0 1 92 0 2 579 0 1 1186 0 2 3032 1 0 93 32 26 178 1 2 112 15 22 146 chain 537774 chrX 155270560 + 56662443 56668596 L1PA3long 6157 + 0 6157 3188 3162 4 7 1501 0 1 1486 chain 109983 chrX 155270560 + 56672814 56674048 L1PA3long 6157 - 0 1237 34111 772 0 3 462 chain 163758 chrX 155270560 + 56674048 56675937 L1HS 6032 + 1146 3036 22839 1416 0 1 473 chain 3995 chrX 155270560 + 56675958 56676016 L1PA11 4918 - 515 572 207459 9 2 1 47 chain 84330 chrX 155270560 + 56682266 56683376 L1PA8 5853 - 0 1101 41778 93 2 1 18 2 1 51 2 1 9 2 1 70 2 0 44 1 0 90 2 1 464 2 0 219 0 1 37 chain 44347 chrX 155270560 + 56683397 56684019 L1PA8 5853 - 0 625 63762 93 1 0 19 2 1 52 1 0 9 1 0 71 23 21 23 1 0 122 2 1 42 0 1 4 1 11 155 chain 161074 chrX 155270560 + 56689343 56691239 L1PA5 6144 - 0 2479 23184 138 6 12 748 3 0 743 0 580 258 chain 21282 chrX 155270560 + 56698229 56698499 AluSp 311 - 23 301 122923 42 0 10 84 2 0 142 chain 456166 chrX 155270560 + 56700136 56706279 L1PA7 6471 + 5 6467 8538 181 26 25 110 87 311 89 63 148 180 0 21 1118 4 5 10 1 5 428 2 3 269 0 1 575 11 2 5 0 2 343 13 6 110 0 1 10 0 3 6 3 1 125 0 1 263 0 1 58 19 0 12 12 6 368 6 10 803 1 4 105 0 9 316 0 1 257 4 5 150 chain 151549 chrX 155270560 + 56710334 56712432 L1PA8A 6298 - 840 2956 24391 168 63 66 128 13 14 60 6 5 154 15 16 8 0 1 6 2 1 475 0 1 255 0 1 172 8 15 33 0 1 461 1 5 70 chain 18646 chrX 155270560 + 56718365 56718683 L1PB2 3958 + 3559 3838 131096 58 1 0 64 1 0 61 9 7 20 47 12 57 chain 566933 chrX 155270560 + 56722317 56728349 L1HS 6032 + 0 6032 93 6032 chain 62156 chrX 155270560 + 56730979 56731837 L1P3 4156 - 3313 4156 51827 438 24 0 75 12 11 56 36 35 171 0 11 46 chain 31735 chrX 155270560 + 56737449 56738045 L1PB1 5432 + 4861 5427 81270 232 55 55 10 5 1 9 2 0 51 1 0 17 1 0 44 1 0 16 28 16 15 7 4 15 2 0 13 0 1 10 1 0 19 4 3 12 1 0 11 1 0 8 1 0 4 chain 145771 chrX 155270560 + 56749516 56751878 L1PB1 5432 + 3096 5077 25211 52 2 0 486 0 1 70 1 0 4 0 1 15 17 7 162 0 1 4 1 2 51 0 2 418 337 25 67 59 1 7 0 2 148 6 0 7 0 1 175 2 1 28 3 2 6 0 1 112 3 0 29 0 3 90 chain 183161 chrX 155270560 + 56768142 56770847 L1MA1 4479 - 328 3000 20662 9 1 0 33 5 3 26 25 33 23 0 1 71 3 0 5 1 0 23 0 1 64 1 0 14 2 0 19 1 0 71 1 0 16 2 0 10 3 5 9 1 0 196 2 0 122 11 8 74 5 0 52 4 0 12 1 0 266 2 0 27 1 0 90 3 4 60 1 0 33 2 0 9 3 17 77 1 0 60 0 2 8 10 13 20 0 10 160 0 14 26 1 0 253 10 4 8 2 0 105 0 3 6 8 5 15 14 15 7 30 0 224 0 3 68 24 7 153 chain 118578 chrX 155270560 + 56781418 56782734 L1PA3long 6157 + 4841 6157 31589 1316 chain 499254 chrX 155270560 + 56832257 56838643 L1PA7 6471 - 3 6471 6875 331 1 2 431 0 2 78 0 3 412 0 1 259 1 0 690 16 18 35 1 0 113 19 82 59 6 1 113 15 14 327 1 0 241 2 3 153 0 4 462 1 2 38 0 1 94 0 1 173 5 6 245 0 5 678 9 10 200 1 0 429 2 1 349 10 7 118 29 39 75 1 0 163 chain 16919 chrX 155270560 + 56839415 56839618 L1PA5 6144 + 5926 6131 135797 70 0 1 19 0 1 114 chain 4414 chrX 155270560 + 56847783 56847849 L1M3e 1964 + 99 167 201746 42 0 4 6 1 0 6 1 0 10 chain 32753 chrX 155270560 + 56850806 56851194 L1PA6 6164 + 5780 6162 79609 64 1 0 312 5 0 6 chain 282591 chrX 155270560 + 56853808 56857554 L1PA7 6471 - 6 3753 14497 6 3 0 41 12 11 108 0 2 365 0 1 227 0 1 20 0 1 116 1 0 156 0 1 28 0 1 419 5 6 127 1 0 4 0 1 200 0 2 95 0 1 266 1 2 519 2 0 6 5 7 39 8 9 57 9 10 28 0 45 43 53 1 242 0 2 115 11 1 33 0 4 255 6 8 54 2 3 58 chain 523279 chrX 155270560 + 56862099 56868754 L1PA4 6152 - 1 6151 4840 846 1 5 759 0 1 790 1 2 486 0 2 167 16 15 72 0 1 346 0 1 132 547 12 6 0 2 882 0 1 386 0 1 201 0 1 220 0 13 92 0 1 132 0 1 88 1 2 484 chain 44965 chrX 155270560 + 56865718 56866262 L1PA4 6152 - 0 542 63097 334 1 0 47 2 1 160 chain 10814 chrX 155270560 + 56870492 56870636 L1PA8 5853 - 0 142 156920 93 1 0 19 2 1 29 chain 433125 chrX 155270560 + 56873494 56879711 L1PA8 5853 + 50 5853 9234 22 3 1 9 1 0 12 51 15 174 57 45 61 1 3 270 4 0 783 0 1 108 0 1 462 3 4 300 6 15 8 9 0 93 5 8 233 0 1 210 103 23 80 1 2 36 0 2 353 0 1 4 1 0 4 1 0 80 0 1 270 0 1 236 8 0 120 0 8 365 0 1 113 9 8 18 311 0 208 3 1 29 0 1 140 0 1 11 1 0 4 2 0 81 3 0 240 1 31 160 16 15 27 1 0 5 0 3 38 2 0 68 2 1 14 1 0 47 2 1 19 1 0 93 chain 4786 chrX 155270560 + 56883111 56883169 L1M1 2793 - 1226 1284 197502 58 chain 25257 chrX 155270560 + 56885102 56885415 THE1A 353 - 40 353 103439 313 chain 527797 chrX 155270560 + 56895435 56901558 L1PA4 6152 + 6 6140 4420 188 1 0 464 0 1 409 0 9 159 0 1 758 2 1 403 4 5 601 0 1 3134 chain 119773 chrX 155270560 + 56905175 56906510 L1PA3long 6157 - 0 1336 31130 154 0 1 1181 chain 4625 chrX 155270560 + 56909260 56909396 L1MA2 4263 - 4031 4147 199345 34 69 49 33 chain 83016 chrX 155270560 + 56915189 56916128 L1PA3long 6157 - 5 945 42328 167 16 17 756 chain 509815 chrX 155270560 + 56920364 56926471 L1PA4 6152 + 3 6119 6183 122 2 16 12 29 15 313 12 13 355 12 20 891 0 1 551 1 2 271 1 0 598 1 0 103 1 0 131 8 6 1084 1 4 74 0 1 367 4 5 4 1 0 339 1 0 818 chain 201258 chrX 155270560 + 56926498 56929306 L1PA7 6471 + 3570 6466 19119 120 44 6 133 10 0 151 0 1 4 1 0 56 6 7 36 15 16 124 4 6 243 0 1 100 1 0 4 4 5 372 14 142 142 0 1 188 1 0 245 0 1 35 0 1 34 0 1 527 15 15 20 15 16 9 1 3 124 3 0 7 chain 3784 chrX 155270560 + 56933288 56933328 L1PA6 6164 - 48 88 210602 40 chain 475628 chrX 155270560 + 56940988 56947726 L1PA6 6164 - 2 6164 7866 139 724 0 316 0 2 5 2 0 61 0 1 48 1 0 136 9 0 651 0 22 162 4 5 359 0 1 34 0 1 264 1 0 184 1 2 74 0 128 28 10 9 249 0 2 63 0 1 316 3 0 446 0 4 17 6 7 99 1 2 301 0 1 186 0 1 4 1 0 1292 2 1 293 1 0 245 chain 19525 chrX 155270560 + 56941150 56941367 L1PA6 6164 - 165 382 128581 217 chain 21940 chrX 155270560 + 56961602 56961853 L1P1 4361 + 2374 2625 120460 251 chain 157344 chrX 155270560 + 56962419 56964315 L1P1 4361 - 40 1940 23685 16 1 0 26 0 1 105 0 1 24 9 8 101 0 1 245 0 1 267 16 15 252 1 3 83 0 1 750 chain 388743 chrX 155270560 + 56964336 56968849 L1PA4 6152 - 6 4523 10494 620 0 1 224 0 1 948 0 4 83 0 3 572 0 2 310 1 0 127 0 1 79 6 0 484 2 1 373 2 0 632 0 1 8 0 1 42 chain 83061 chrX 155270560 + 56969061 56974594 HERVK11-int 2540 + 678 2227 42308 49 42 32 4 1 0 9 2 0 21 77 41 44 3 0 11 7 6 9 96 0 4 3758 0 17 68 60 16 59 43 22 2 0 55 19 18 35 7 6 8 3 0 27 13 3 8 1 0 27 12 1 36 21 1 311 0 3 114 17 12 106 1 0 172 18 21 70 14 9 17 1 2 99 chain 432216 chrX 155270560 + 56975180 56980256 L1PA4 6152 - 6 6152 9259 838 0 4 383 0 1 140 0 1 1097 1 0 21 0 1 1205 5 0 67 0 4 605 0 1067 131 14 17 93 32 27 444 chain 86523 chrX 155270560 + 56980677 56981735 MER11B 1079 + 0 1057 40963 225 0 5 511 10 0 25 1 3 107 0 1 156 0 1 23 chain 57520 chrX 155270560 + 56996983 56997680 L1PA4 6152 + 3043 3738 54223 633 4 1 4 0 1 56 chain 214992 chrX 155270560 + 56997682 57000090 L1PA4 6152 + 3738 6151 18164 1478 0 1 87 0 4 843 chain 11400 chrX 155270560 + 57000395 57000525 L1PA5 6144 + 5998 6128 154696 130 chain 120413 chrX 155270560 + 57024517 57025836 L1PA3long 6157 + 4840 6157 30899 187 1 0 357 1 0 773 chain 9327 chrX 155270560 + 57034465 57034569 L1PA3long 6157 - 5 109 163909 104 chain 276862 chrX 155270560 + 57037761 57041050 L1PA5 6144 - 27 3785 14826 231 0 1 91 14 330 347 0 1 415 0 123 92 6 8 30 0 3 513 0 1 8 0 1 239 4 1 512 6 7 412 1 22 9 0 2 359 chain 211552 chrX 155270560 + 57050359 57052853 L1PA6 6164 - 4 2555 18394 326 0 2 235 0 52 230 1 0 168 1 2 430 2 0 6 0 2 576 0 2 202 0 1 317 chain 483279 chrX 155270560 + 57058595 57064899 L1PA7 6471 - 7 6471 7618 142 3 4 180 9 9 127 7 1 67 0 9 50 0 4 250 1 4 210 3 4 300 0 1 117 0 1 33 2 0 222 4 99 408 0 9 119 0 1 84 16 0 184 0 1 93 0 7 67 9 13 41 2 6 74 3 4 480 1 2 359 0 3 34 0 1 100 6 7 33 0 2 244 0 3 175 1 0 46 0 2 473 0 1 159 1 0 39 15 7 96 0 1 90 0 9 333 0 1 4 1 0 446 23 50 157 0 1 161 chain 192439 chrX 155270560 + 57068640 57071164 HERVL-int 5654 - 0 2586 19819 217 0 4 145 5 2 10 0 3 167 23 44 190 0 2 109 1 3 4 1 0 569 6 8 50 1 18 87 7 21 640 1 2 291 chain 202879 chrX 155270560 + 57072683 57075340 L1PA7 6471 + 3110 5785 19005 439 0 4 27 0 4 429 1 0 607 2 1 42 0 8 264 2 1 19 2 0 4 0 1 142 0 1 312 0 1 4 3 4 189 1 0 11 6 9 112 0 1 39 chain 273831 chrX 155270560 + 57075356 57078557 L1P1 4361 + 1 3201 14982 790 0 6 231 1 0 74 4 0 288 3 0 53 8 9 1749 chain 46163 chrX 155270560 + 57078585 57079168 L1PA3long 6157 - 0 584 61886 34 9 0 8 0 9 87 6 0 10 3 10 426 chain 213903 chrX 155270560 + 57081511 57084678 L1P3 4156 - 19 3352 18234 24 1 0 5 3 1 168 6 8 167 10 14 564 0 5 22 1 0 267 0 1 157 22 32 7 10 0 59 1 2 165 19 413 244 337 0 72 0 1 636 0 99 200 chain 52221 chrX 155270560 + 57103891 57104794 L1PB2 3958 - 120 998 57487 63 1 0 22 7 5 14 32 31 24 1 0 12 1 2 34 3 0 13 1 0 60 14 13 96 3 0 11 2 0 36 45 21 18 0 3 22 6 6 25 2 0 174 12 18 95 0 6 54 chain 13814 chrX 155270560 + 57104890 57105040 L1PA5 6144 - 837 987 143948 150 chain 73449 chrX 155270560 + 57105040 57105883 L1PA5 6144 + 5295 6139 46814 697 2 3 144 chain 296912 chrX 155270560 + 57114016 57117570 L1P1 4361 - 781 4357 13594 301 1 0 29 0 4 82 1 0 408 0 21 424 1 0 867 0 1 6 0 2 7 10 6 367 0 1 4 0 1 147 1 0 898 chain 14681 chrX 155270560 + 57120430 57120588 L1PA2 6032 + 5868 6026 142319 158 chain 479834 chrX 155270560 + 57120789 57127191 L1PA7 6471 + 16 6466 7735 184 6 7 31 5 6 109 20 21 28 1 0 1 7 0 10 8 7 53 1 0 104 10 7 53 1 2 103 9 14 375 7 8 113 0 19 836 0 22 8 0 1 500 8 9 245 30 0 23 0 12 169 0 4 28 2 0 89 0 16 10 16 0 151 10 9 100 2 0 103 0 1 131 1 5 5 3 0 99 0 4 74 9 13 23 12 15 24 5 6 65 0 1 262 0 6 490 0 1 16 8 7 194 0 1 179 0 4 318 8 10 150 1 0 38 0 1 559 1 2 149 2 0 7 chain 174426 chrX 155270560 + 57135829 57138258 L1PB1 5432 + 3028 5430 21547 522 8 9 159 12 14 149 0 2 25 1 0 54 6 5 521 0 1 75 8 9 54 2 0 80 0 2 209 5 6 155 0 4 20 1 0 11 2 1 23 1 0 9 1 0 5 11 7 9 2 0 52 2 1 10 6 5 44 1 0 16 1 0 4 2 0 11 11 0 16 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 7 chain 207337 chrX 155270560 + 57149448 57151790 L1PA4 6152 - 11 2354 18694 102 0 1 2240 chain 29617 chrX 155270560 + 57157508 57157817 AluYb8 318 - 9 318 86152 309 chain 9621 chrX 155270560 + 57168267 57168398 L1PA8 5853 - 38 166 162484 55 1 0 16 2 1 51 1 0 5 chain 234814 chrX 155270560 + 57170974 57174474 L1PB1 5432 - 10 3440 17040 6 1 0 12 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 6 4 15 29 16 10 2 1 45 1 0 15 2 1 52 18 12 9 1 0 13 1 0 19 64 12 119 9 23 155 1 2 22 10 6 67 0 3 71 10 8 176 0 1 5 1 0 415 11 4 34 1 0 230 45 47 140 0 2 639 0 4 34 4 5 34 18 15 148 5 11 183 32 29 86 4 0 38 13 16 35 5 7 222 0 1 74 chain 362710 chrX 155270560 + 57174994 57179344 L1P1 4361 - 20 4360 11298 12 2 1 23 1 0 155 1 0 40 0 1 141 0 1 145 0 2 661 3 1 1798 0 1 121 1 0 85 8 11 229 5 11 73 17 0 253 3 2 573 chain 513130 chrX 155270560 + 57184287 57190319 L1PA4 6152 - 0 6150 5873 6 0 4 137 5 6 370 0 1 320 0 4 232 0 1 104 0 4 607 0 2 238 0 1 426 2 0 428 0 7 16 29 3 2335 11 139 54 7 0 131 2 1 419 0 1 153 chain 56740 chrX 155270560 + 57191484 57192133 L1PA3long 6157 + 5508 6156 54691 632 1 0 16 chain 71629 chrX 155270560 + 57209911 57210965 MER11A 1151 + 0 1151 47638 55 0 99 22 8 0 52 1 0 66 4 0 38 0 2 106 7 8 49 0 2 39 0 1 14 0 34 97 0 3 27 0 1 99 46 29 41 18 0 36 0 1 34 6 5 23 0 1 46 4 5 116 chain 344670 chrX 155270560 + 57211988 57216666 L1PA8 5853 - 1 5801 11767 89 8 7 15 2 1 52 2 1 7 2 1 71 12 11 34 1 0 27 9 0 179 4 0 151 4 5 187 0 6 601 1 0 8 2 1 196 8 12 19 9 5 568 0 3 4 0 1 153 1 0 4 0 1 111 0 1 243 0 1 64 2 0 50 0 1 23 0 4 17 1 3 101 7 8 161 0 1171 691 0 3 475 14 3 193 49 13 13 1 0 10 2 0 20 chain 86829 chrX 155270560 + 57219094 57220144 MER11C 1089 + 7 1074 40846 105 0 3 135 0 1 62 0 4 237 0 1 133 0 4 45 0 1 151 0 1 18 0 1 154 1 2 9 chain 40081 chrX 155270560 + 57229457 57229960 MER9a3 513 - 7 513 69210 70 0 1 179 1 0 145 0 1 90 5 7 13 chain 370719 chrX 155270560 + 57229973 57234404 HERVK9-int 4720 - 16 4586 11068 23 2 3 214 0 1 90 0 1 622 3 135 308 1 0 7 0 1 171 0 1 49 0 2 532 0 1 1431 5 7 239 0 1 575 2 0 116 13 12 28 chain 38209 chrX 155270560 + 57234982 57235484 MER9a3 513 - 6 513 71827 49 0 1 21 0 1 179 1 0 66 17 18 61 0 1 95 0 2 13 chain 188841 chrX 155270560 + 57242574 57245360 L1PB1 5432 - 8 2684 20163 4 1 0 19 1 0 10 1 0 21 9 8 16 2 0 14 53 36 15 1 0 44 1 0 16 2 1 53 2 0 9 6 2 22 1 0 20 173 21 239 3 0 221 4 0 100 0 2 31 28 23 335 0 1 360 0 86 273 11 9 11 1 0 5 0 1 125 0 1 331 0 4 6 4 0 87 1 0 7 1 0 78 0 1 8 chain 117644 chrX 155270560 + 57246895 57248868 HERVH48-int 3304 + 1398 3244 31911 172 2 1 88 1 0 63 1 0 208 1 2 204 5 6 4 1 0 48 1 0 18 2 0 70 1 0 12 1 0 46 9 8 222 1 0 3 1 0 19 1 0 44 1 0 4 1 0 17 3 0 25 2 0 19 1 0 4 1 0 4 124 87 11 14 8 28 3 0 7 10 6 19 19 11 10 9 8 13 3 0 6 1 0 45 1 0 3 2 0 68 60 44 69 90 65 27 chain 6251 chrX 155270560 + 57265465 57265564 L1PA15 4387 - 73 169 183165 39 11 8 49 chain 40902 chrX 155270560 + 57268304 57268854 L1P3 4156 + 728 1311 68027 194 16 0 310 0 25 9 9 33 12 chain 313955 chrX 155270560 + 57268894 57272990 L1P3 4156 + 0 4139 12859 247 17 16 278 1 7 194 0 2 102 1 2 32 0 2 67 0 1 315 3 6 281 1 0 42 0 3 99 8 9 367 0 1 31 10 25 5 0 1 529 2 1 131 0 1 103 0 2 267 0 3 354 1 2 40 3 0 10 0 3 42 4 5 379 0 1 23 5 9 67 2 0 7 2 1 24 chain 285486 chrX 155270560 + 57296973 57301701 L1P2 5180 + 3 4508 14320 147 1 0 4 1 0 4 0 1 43 681 448 37 81 60 26 10 25 141 0 19 69 127 122 168 33 36 93 0 4 6 12 4 514 0 1 112 10 3 423 0 2 463 0 1 226 5 4 11 0 1 149 0 1 144 0 1 116 0 4 57 0 2 5 6 4 394 0 1 409 chain 321885 chrX 155270560 + 57301837 57306043 L1PA7 6471 + 2286 6467 12526 4 1 0 230 0 2 118 5 6 857 1 0 754 1 2 10 0 1 97 1 2 586 1 0 6 0 2 162 5 0 242 2 0 130 31 4 42 1 0 34 16 20 24 20 19 184 0 1 34 0 1 205 1 2 350 1 4 17 2 1 4 0 1 17 4 0 6 chain 4937 chrX 155270560 + 57314468 57314558 MADE1 96 + 3 96 195828 20 23 26 47 chain 529292 chrX 155270560 + 57321919 57328040 L1PA4 6152 + 16 6136 4267 431 1 5 582 1 0 197 3 2 225 5 6 735 0 1 4 1 0 979 1 0 161 1 3 342 1 0 1244 3 1 294 1 0 215 1 0 693 chain 294302 chrX 155270560 + 57343575 57347289 L1PA7 6471 + 2431 6146 13747 207 1 2 94 8 9 473 0 4 264 6 4 9 2 0 47 0 1 126 1 0 82 5 0 74 1 2 234 0 1 823 0 1 188 22 0 11 0 22 118 17 21 179 5 3 142 0 1 46 1 0 402 18 17 108 chain 472451 chrX 155270560 + 57349272 57354783 L1PA4 6152 - 0 5516 7958 6 0 5 655 0 1 43 1 0 58 1 0 90 6 1 548 0 1 570 0 1 234 0 1 591 1 3 167 1 0 973 1 0 4 0 1 735 5 6 225 3 2 239 0 1 290 0 1 64 chain 84429 chrX 155270560 + 57356169 57357222 MER11C 1089 + 0 1063 41746 250 3 4 59 0 4 68 1 0 150 14 15 138 0 4 45 0 1 325 chain 81036 chrX 155270560 + 57361596 57362974 LTR5_Hs 974 - 0 974 43175 65 4 0 39 10 1 38 6 33 710 418 0 88 chain 35352 chrX 155270560 + 57364503 57364997 LTR7 482 - 7 482 75728 42 13 14 137 0 31 71 51 0 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57409967 L1PA4 6152 + 2515 4348 23489 1527 0 1 135 0 1 169 chain 146031 chrX 155270560 + 57409967 57411610 L1PA4 6152 + 4350 6038 25164 1300 0 23 13 0 22 330 chain 9309 chrX 155270560 + 57411610 57411714 L1PA4 6152 + 6039 6143 164017 104 chain 32598 chrX 155270560 + 57424136 57424532 L1PA5 6144 - 3 397 79849 6 5 0 248 4 6 69 0 1 64 chain 15103 chrX 155270560 + 57424533 57424698 L1PA5 6144 + 5584 5749 141019 165 chain 25960 chrX 155270560 + 57424991 57425317 LTR17 781 - 455 781 100171 25 0 1 61 7 6 233 chain 329867 chrX 155270560 + 57425658 57429898 HERV17-int 4347 - 0 4334 12208 144 0 1 705 0 1 757 326 0 1135 0 1 131 1 2 115 1 0 148 0 1 154 9 0 256 0 1 30 0 430 45 0 1 18 11 1 90 1 9 32 1 0 27 2 0 34 1 0 51 2 1 13 chain 496479 chrX 155270560 + 57438644 57445122 L1PA7 6471 - 4 6471 7040 8 2 0 28 21 7 289 1 0 429 2 0 73 5 8 4 1 0 127 8 9 290 0 4 90 0 6 139 0 3 570 2 3 18 10 4 522 12 0 229 0 1 67 12 10 31 7 8 10 0 4 781 2 1 55 1 2 287 3 1 244 14 16 191 6 7 93 2 0 24 7 8 13 2 1 52 19 20 115 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46 2 0 14 chain 6858 chrX 155270560 + 57741287 57741369 L1PA8 5853 + 5527 5608 178515 39 1 0 42 chain 6239 chrX 155270560 + 57741371 57741441 L1PA8 5853 + 5608 5678 183255 70 chain 10729 chrX 155270560 + 57741468 57741619 L1PA8 5853 + 5704 5853 157284 31 9 8 17 1 0 93 chain 174295 chrX 155270560 + 57744217 57746183 L1PA3long 6157 - 0 1969 21563 171 0 1 175 0 2 1620 chain 24519 chrX 155270560 + 57747306 57747707 L1PA11 4918 - 493 900 107447 13 2 0 18 11 14 53 2 0 13 19 23 57 13 16 200 chain 500499 chrX 155270560 + 57751920 57757888 L1PA4 6152 - 9 6089 6806 146 4 5 698 0 1 1544 5 6 53 2 1 12 3 0 169 0 103 475 1 0 588 0 2 459 0 1 494 0 2 31 0 1 291 5 6 17 1 0 4 0 1 76 0 4 769 0 1 4 1 0 116 chain 468653 chrX 155270560 + 57770437 57776696 L1PA7 6471 + 5 6466 8086 196 11 10 118 24 194 132 30 8 9 0 22 27 4 14 45 1 2 547 18 17 423 3 1 75 3 4 66 0 1 83 5 4 444 0 1 980 0 2 124 7 8 23 0 2 97 3 7 306 6 0 11 9 10 256 0 2 41 0 2 107 2 1 201 2 3 32 0 8 158 0 7 788 1 7 264 0 1 102 8 0 84 1 5 211 18 0 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57878645 57878694 L1PA13 3608 - 3341 3390 205005 49 chain 451139 chrX 155270560 + 57881814 57887576 L1PA7 6471 + 695 6466 8733 224 6 7 227 0 1 4 1 0 174 1 2 38 3 4 4 1 0 511 0 1 248 1 2 258 6 5 115 0 4 40 0 1 126 0 1 37 0 1 119 1 4 149 9 12 392 0 1 32 0 5 86 0 1 11 0 4 47 0 1 17 0 1 181 0 3 185 0 1 22 20 19 58 10 7 890 37 14 305 0 1 34 9 10 7 1 0 134 0 1 140 4 0 85 0 1 425 0 4 327 chain 21608 chrX 155270560 + 57887900 57888144 L1PA4 6152 + 5899 6143 121743 244 chain 520936 chrX 155270560 + 57889632 57895737 L1PA5 6144 + 0 6144 5064 182 0 20 1193 1 10 506 0 1 77 0 4 174 0 2 144 2 0 66 0 4 69 1 0 308 0 1 413 1 0 328 1 0 1233 0 3 1014 1 0 58 0 1 170 1 6 4 5 0 153 chain 41973 chrX 155270560 + 57903104 57903589 LTR15 485 + 0 485 66653 23 1 0 4 0 1 457 chain 10954 chrX 155270560 + 57903595 57903752 HERVK22-int 3844 + 2995 3148 156386 53 2 1 69 1 0 6 1 0 20 1 0 4 chain 3135 chrX 155270560 + 57953467 57953568 L1PA16 3655 - 36 114 222270 14 5 0 13 17 0 15 3 0 7 9 11 18 chain 76420 chrX 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520 11 12 68 27 10 378 0 1 67 4 0 195 1 2 159 25 22 1021 0 3 1544 7 6 98 0 4 694 0 1 1090 chain 233920 chrX 155270560 + 58159674 58162232 L1PA2 6032 - 0 2529 17092 12 28 0 2459 2 1 57 chain 77356 chrX 155270560 + 58178584 58179483 MER11D 897 - 0 897 44799 119 1 2 169 3 0 607 chain 160467 chrX 155270560 + 58185903 58187968 L1PA7 6471 + 4142 6438 23277 272 5 0 70 0 1 300 4 7 90 0 1 104 0 128 59 1 2 15 30 31 325 0 1 73 1 0 79 0 2 52 0 2 69 7 8 168 0 1 18 0 95 323 chain 86755 chrX 155270560 + 58245332 58246396 MER11C 1089 - 16 1082 40863 186 0 1 286 8 9 496 0 1 74 1 0 13 chain 195042 chrX 155270560 + 58351745 58353992 L1PA4 6152 + 3890 6140 19583 1429 0 1 512 0 1 170 1 2 135 chain 29182 chrX 155270560 + 58421109 58421420 AluYa5 310 + 0 310 88134 132 1 0 178 chain 390832 chrX 155270560 + 58423661 58428210 L1PA4 6152 + 1586 6143 10425 482 1 0 244 0 5 62 0 1 428 1 0 700 1 2 534 1 2 31 1 2 1738 0 1 325 chain 74746 chrX 155270560 + 58471301 58472188 MER11D 897 - 0 887 46138 887 chain 175718 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0 1 405 0 1 239 0 1 273 0 1 293 0 1 719 18 0 431 chain 286656 chrX 155270560 + 61973618 61977371 HERVK9-int 4720 - 6 4684 14246 272 1 0 35 9 13 17 0 1 889 16 17 10 5 6 83 0 1 63 1 0 4 16 13 426 0 915 362 0 2 215 0 3 6 4 2 19 8 17 104 0 1 331 0 1 705 25 24 25 10 8 66 1 0 4 8 5 13 chain 138446 chrX 155270560 + 62000723 62002401 L1PA5 6144 - 6 1680 26404 107 7 4 1069 0 1 269 7 8 54 3 0 162 chain 64259 chrX 155270560 + 62002401 62003195 L1P1 4361 + 3103 3899 50800 64 0 1 342 1 0 261 2 3 17 0 1 107 chain 351946 chrX 155270560 + 62041193 62045215 L1PA4 6152 + 2128 6151 11549 414 0 1 239 3 1 425 0 1 731 0 1 233 0 1 273 1 0 1703 chain 4324 chrX 155270560 + 62067322 62067393 MLT2D 439 + 121 193 202907 45 10 11 16 chain 76114 chrX 155270560 + 62075096 62076092 L1P3 4156 + 3143 4139 45413 70 7 8 352 1 6 23 1 2 326 1 0 62 2 0 11 1 0 97 7 5 8 1 0 26 chain 348797 chrX 155270560 + 62077564 62081753 L1PA4 6152 + 10 6152 11644 890 0 2 130 1 0 1169 0 2 305 0 1946 209 11 14 779 10 11 685 chain 3129 chrX 155270560 + 62082929 62082962 MER5A 189 + 33 66 222370 33 chain 345235 chrX 155270560 + 62086733 62090805 L1P1 4361 - 41 4352 11751 15 1 0 154 2 1 474 3 0 103 0 8 256 3 22 128 1 0 443 0 201 122 0 1 493 0 1 888 1 0 394 0 1 448 17 31 20 0 1 106 chain 147775 chrX 155270560 + 62099056 62100712 L1PA3long 6157 - 0 1665 24911 619 0 10 488 1 0 548 chain 121910 chrX 155270560 + 62100712 62102083 L1PA3long 6157 + 3128 4500 30410 60 0 1 1311 chain 418979 chrX 155270560 + 62107894 62113714 L1PA8 5853 + 50 5853 9558 21 2 0 11 1 0 4 58 22 194 38 26 64 0 17 227 0 7 7 1 12 6 17 0 539 4 0 7 4 8 384 3 2 91 17 18 309 6 3 4 1 0 140 7 8 6 2 0 18 0 1 198 20 21 39 0 1 184 4 7 196 3 5 109 29 28 75 23 33 119 1 0 320 16 16 28 6 4 470 0 2 154 2 1 294 1 6 83 1 0 4 0 1 339 0 4 59 7 10 68 4 5 475 5 4 43 2 0 67 2 1 9 3 2 50 8 7 13 2 1 92 chain 494947 chrX 155270560 + 62120199 62126585 L1PA4 6152 - 0 6146 7124 13 0 8 248 556 0 690 0 1 733 9 99 11 0 2 1044 0 1 45 0 1 863 3 4 80 0 1 53 0 1 349 0 1 529 0 198 203 1 2 296 16 24 295 0 1 250 7 8 92 chain 12026 chrX 155270560 + 62120758 62120903 L1PA4 6152 - 9 154 152090 145 chain 199602 chrX 155270560 + 62156703 62159109 L1PA6 6164 - 2 2409 19238 144 4 3 444 27 19 7 0 8 222 1 0 685 2 1 263 13 17 594 chain 22963 chrX 155270560 + 62160206 62160536 L1PA8 5853 + 5214 5562 115791 30 1 0 10 3 0 210 1 24 27 1 0 47 chain 3289 chrX 155270560 + 62160541 62160584 L1PA8 5853 + 5566 5608 219189 34 1 0 8 chain 9098 chrX 155270560 + 62160586 62160713 L1PA8 5853 + 5608 5740 165079 70 13 18 44 chain 7560 chrX 155270560 + 62160717 62160820 L1PA8 5853 + 5743 5853 173806 17 1 0 24 0 8 61 chain 15658 chrX 155270560 + 62165041 62165228 L1P2 5180 + 1369 1556 139401 187 chain 73095 chrX 155270560 + 62165274 62166260 MER11C 1089 - 39 1062 46983 267 5 13 86 0 1 65 0 2 11 14 15 94 2 1 57 24 30 71 1 18 49 4 7 236 chain 393004 chrX 155270560 + 62166414 62171184 L1PA6 6164 + 1375 6156 10358 1848 6 2 238 0 2 63 1 2 211 0 1 46 4 6 212 0 1 307 0 1 4 1 0 43 0 4 101 1 4 419 1 4 421 1 0 702 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309 6 0 340 12 9 8 0 3 402 0 870 887 0 1 730 3 2 469 2 0 212 21 23 347 0 1 659 0 4 300 7 0 8 3 10 123 chain 33351 chrX 155270560 + 62258981 62259396 THE1A-int 1579 + 1161 1579 78653 150 0 1 108 0 2 157 chain 31088 chrX 155270560 + 62268453 62268825 L1P1 4361 + 3972 4341 82367 176 1 0 157 1 0 23 2 1 12 chain 222778 chrX 155270560 + 62280246 62282793 L1PA4 6152 + 3601 6151 17720 1254 0 1 452 0 1 821 0 1 20 chain 66701 chrX 155270560 + 62282807 62283574 L1PA5 6144 + 5377 6144 49787 767 chain 246134 chrX 155270560 + 62286812 62289984 L1PA7 6471 + 3313 6457 16438 184 1 0 32 1 2 75 1 0 230 1 2 141 38 34 232 0 1 231 2 1 240 0 2 374 9 8 235 31 0 255 4 6 23 1 0 186 0 2 304 0 1 30 0 9 122 31 24 158 chain 22418 chrX 155270560 + 62290586 62290907 THE1A 353 - 31 352 118387 44 0 1 35 8 8 5 0 1 17 10 9 91 1 0 110 chain 9830 chrX 155270560 + 62308343 62308495 LTR9 672 - 505 657 161447 22 18 17 78 0 1 34 chain 207489 chrX 155270560 + 62309132 62311674 L1P1 4361 + 2 2538 18681 278 37 38 247 6 5 35 3 7 80 7 0 329 3 0 1517 chain 455037 chrX 155270560 + 62311727 62317009 L1PA4 6152 - 0 5278 8579 15 0 3 210 2 0 827 4 5 898 0 4 228 0 1 790 1 0 306 0 1 421 3 1 119 3 1 313 8 0 439 0 1 333 1 0 183 0 1 178 chain 493745 chrX 155270560 + 62322390 62328532 L1PA5 6144 + 0 6142 7187 65 1 0 59 5 19 144 0 2 463 15 16 184 25 0 12 0 1 63 12 13 124 14 5 17 0 1 199 0 1 509 0 1 176 6 7 229 5 8 85 23 7 271 0 3 290 0 1 715 0 1 551 0 17 142 0 1 522 0 1 534 10 11 672 chain 48199 chrX 155270560 + 62349972 62350611 L1PA8A 6298 - 8 834 60319 98 11 195 57 21 21 428 0 3 24 chain 18355 chrX 155270560 + 62359866 62360098 MER41-int 2638 + 2386 2627 131922 136 0 9 96 chain 161938 chrX 155270560 + 62365467 62367298 L1PA4 6152 + 4322 6151 23074 254 1 0 218 8 7 1350 chain 199973 chrX 155270560 + 62369343 62371622 L1PA4 6152 + 3866 6143 19214 74 0 1 688 5 0 1164 5 0 102 6 13 235 chain 40601 chrX 155270560 + 62373553 62374000 L1PA5 6144 + 5695 6142 68438 447 chain 87438 chrX 155270560 + 62375150 62376320 L1PA11 4918 + 3342 4504 40584 187 2 1 136 15 4 70 0 11 502 3 2 138 2 1 13 2 0 59 8 6 16 1 0 16 chain 65000 chrX 155270560 + 62393490 62394317 LTR25 836 - 0 836 50575 156 0 1 78 1 0 80 1 6 65 0 7 322 0 1 8 4 0 112 chain 46329 chrX 155270560 + 62399784 62400399 MER41B 635 + 0 615 61744 92 1 0 36 1 2 321 18 17 25 0 1 121 chain 21584 chrX 155270560 + 62403136 62403382 L1PA5 6144 + 3963 4209 121831 246 chain 16108 chrX 155270560 + 62403383 62403561 L1PA5 6144 + 4444 4622 138031 178 chain 135005 chrX 155270560 + 62403562 62405080 L1PA5 6144 + 4622 6139 27014 1490 1 0 27 chain 133945 chrX 155270560 + 62405282 62406869 LTR12C 1709 + 0 1708 27225 259 1 3 280 0 1 176 0 118 275 1 0 6 2 0 106 0 4 399 1 0 81 chain 130062 chrX 155270560 + 62408107 62410215 SVA_F 1814 + 335 1811 28075 448 0 40 43 49 0 21 0 1 60 584 14 37 51 0 6 1 0 172 1 0 10 1 0 624 chain 27918 chrX 155270560 + 62408731 62409104 SVA_F 1814 + 966 1284 93285 129 50 0 37 1 0 42 2 0 13 1 0 87 1 0 10 chain 3673 chrX 155270560 + 62409140 62409183 SVA_F 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696 0 1 72 chain 161938 chrX 155270560 + 62450996 62452827 L1PA4 6152 - 1 1830 23075 1350 8 7 218 1 0 254 chain 19201 chrX 155270560 + 62457961 62458202 MER41-int 2638 - 2 252 129523 105 0 9 136 chain 18039 chrX 155270560 + 62458202 62458430 MER41-int 2638 - 15 252 131923 92 0 9 136 chain 48199 chrX 155270560 + 62467683 62468322 L1PA8A 6298 + 5464 6290 60318 25 0 3 427 21 21 57 11 195 98 chain 4842 chrX 155270560 + 62475164 62475459 MER4E1 777 - 8 308 60034 227 1 6 67 chain 184903 chrX 155270560 + 62475518 62477726 L1PA7 6471 + 4250 6468 20509 43 0 1 279 1 0 5 0 1 1042 1 0 6 0 1 71 1 3 308 1 5 98 0 5 329 1 0 4 0 1 7 2 0 9 chain 6468 chrX 155270560 + 62477731 62478125 MER4E1 777 - 340 770 60034 101 5 7 74 8 29 10 0 12 26 1 0 4 0 1 155 0 1 10 chain 513657 chrX 155270560 + 62480955 62486882 L1PA4 6152 - 0 6145 5816 626 0 1 410 1 2 1100 0 1 48 0 2 45 0 1 458 1 0 2221 0 1 407 0 1 518 0 211 92 chain 16637 chrX 155270560 + 62488427 62488613 L1PA5 6144 + 4573 4759 136563 186 chain 16105 chrX 155270560 + 62488613 62488796 L1PA5 6144 + 4767 4950 138038 183 chain 98725 chrX 155270560 + 62488796 62489949 L1PA5 6144 + 4979 6142 37095 825 0 1 193 1 3 4 1 0 99 0 8 30 chain 16392 chrX 155270560 + 62491774 62491970 MER4E 760 - 27 223 137230 196 chain 12470 chrX 155270560 + 62492445 62492902 MER83 447 + 0 440 150376 56 27 26 16 50 0 21 14 5 19 34 22 23 93 147 37 1 0 27 18 20 21 chain 522083 chrX 155270560 + 62505888 62511950 L1PA4 6152 - 9 6146 4949 1791 0 4 144 0 2 865 4 63 759 0 2 211 0 1 857 0 1 16 0 5 60 13 14 609 1 0 566 11 12 155 chain 32847 chrX 155270560 + 62526529 62526891 L1PA5 6144 + 5770 6132 79463 362 chain 3956 chrX 155270560 + 62529641 62529696 MLT2A1 477 - 0 57 208053 37 1 3 17 chain 444940 chrX 155270560 + 62530151 62536386 HERVL-int 5654 - 0 5653 8906 43 3 13 18 0 3 146 0 1 12 0 5 79 0 1 16 12 11 79 0 1 8 2 0 53 5 6 10 1 0 246 1 4 320 5 11 250 0 1 688 3 1 573 0 1 324 0 1 258 7 0 90 670 0 281 0 1 172 0 5 33 0 53 110 0 2 656 0 2 93 1 0 9 1 2 175 0 1 76 2 0 253 0 1 43 1 3 247 0 2 160 chain 39719 chrX 155270560 + 62533406 62534071 LTR66 600 - 0 600 69729 31 3 7 99 14 0 31 2 3 24 8 0 12 71 0 78 0 5 130 5 3 26 0 2 6 7 25 118 chain 27305 chrX 155270560 + 62538208 62538518 L1PA2 6032 - 4 314 95261 150 0 5 7 5 0 148 chain 162512 chrX 155270560 + 62538518 62540319 L1HS 6032 + 934 2738 22998 1396 0 2 236 0 1 169 chain 499805 chrX 155270560 + 62550608 62557257 L1PA7 6471 + 0 6470 6850 92 7 8 305 1 2 106 12 11 395 0 3 357 2 0 6 19 8 51 0 1 10 2 1 114 2 1 177 3 6 662 0 1 145 0 1 11 4 13 153 0 1 54 0 1 113 11 0 3 222 0 9 0 12 56 16 20 187 0 4 167 0 1 556 13 5 42 0 8 327 8 7 337 18 46 26 10 23 304 2 0 171 26 16 190 0 1 183 1 0 111 1 0 390 1 0 126 2 1 175 2 0 6 0 2 134 2 4 11 chain 8498 chrX 155270560 + 62553425 62553527 L1PA7 6471 + 1565 1670 164319 85 1 4 16 chain 10359 chrX 155270560 + 62553527 62553647 L1PA7 6471 + 3557 3676 158516 55 1 0 64 chain 259249 chrX 155270560 + 62578364 62582752 HERVK22-int 3844 - 0 3741 15741 94 1 0 88 788 196 29 11 7 17 145 107 14 2 0 45 1 0 6 8 4 39 2 0 20 1 0 36 1 0 18 1 0 5 2 1 59 1 0 12 1 0 24 7 7 116 0 1 89 0 4 476 0 1 114 0 1 183 6 24 30 0 1 101 28 12 1242 0 2 8 2 0 172 8 0 81 6 7 248 chain 491008 chrX 155270560 + 62587317 62593071 L1PA4 6152 + 6 6143 7318 975 4 6 75 0 2 83 8 12 47 2 1 4 0 1 495 0 1 1850 0 366 296 0 8 61 0 1 1528 1 0 325 chain 49971 chrX 155270560 + 62596725 62597349 L1P2 5180 + 1800 2426 59039 218 0 1 257 0 1 149 chain 27090 chrX 155270560 + 62604099 62604655 MER41B 635 - 241 624 95972 65 175 3 23 14 11 165 1 2 37 0 1 76 chain 156941 chrX 155270560 + 62612275 62614047 SVA_D 2077 + 0 2077 23733 19 5 0 615 3 0 282 5 42 34 0 51 47 0 127 86 0 98 676 chain 79439 chrX 155270560 + 62617827 62618935 MER57-int 2662 - 1398 2529 43853 129 43 39 193 0 4 73 9 7 235 0 21 103 9 13 128 8 6 124 0 2 54 chain 56375 chrX 155270560 + 62620812 62621568 MER4E 760 + 0 760 54918 24 6 0 124 22 24 9 0 1 82 0 1 104 0 2 75 1 0 6 0 5 113 8 5 163 0 2 12 0 1 7 chain 32003 chrX 155270560 + 62628912 62629367 LTR2 463 + 0 445 80859 60 2 1 237 24 14 47 15 16 70 chain 421801 chrX 155270560 + 62631047 62636113 Harlequin-int 5206 + 125 5206 9493 75 0 5 101 1 0 64 4 0 25 0 1 86 1 0 424 0 7 89 6 5 174 29 0 111 3 2 340 0 1 71 0 5 861 0 1 65 0 1 1037 9 0 873 1 0 247 0 3 110 1 39 258 chain 32996 chrX 155270560 + 62636113 62636571 LTR2 463 + 0 463 79219 60 2 1 224 16 18 48 20 24 88 chain 56428 chrX 155270560 + 62662036 62662793 MER4E1 777 + 0 770 54893 17 3 0 176 8 13 44 0 1 161 0 2 127 16 24 205 chain 509533 chrX 155270560 + 62666352 62672362 L1PA5 6144 - 12 6139 6203 826 6 103 665 0 3 594 0 1 336 0 2 438 1 0 407 0 1 561 1 3 353 0 1 602 0 1 22 0 1 42 9 0 220 0 4 797 0 14 130 chain 221366 chrX 155270560 + 62682412 62685003 L1P2 5180 - 1243 3838 17790 422 1 0 255 0 4 72 0 1 736 0 4 235 0 2 558 12 6 10 1 0 4 0 1 285 chain 249525 chrX 155270560 + 62686643 62690330 MER61-int 3695 - 3 3688 16280 46 6 0 55 3 2 89 0 1 124 52 28 195 3 2 20 1 2 189 2 1 38 1 0 36 2 1 87 6 11 96 0 1 73 0 1 87 1 0 29 0 1 243 0 1 101 2 0 342 1 0 201 5 9 82 0 1 61 16 15 144 8 10 42 0 3 95 0 5 193 9 8 68 2 0 93 22 85 64 4 10 102 10 3 77 27 13 74 3 0 5 5 1 54 1 0 29 88 74 103 0 4 16 33 18 21 chain 41526 chrX 155270560 + 62694621 62695339 LTR76 689 + 6 689 67249 19 0 4 20 2 0 64 60 61 24 0 2 13 0 1 29 2 0 144 5 3 12 24 0 105 10 0 3 5 0 76 2 1 21 9 10 17 1 3 51 chain 502565 chrX 155270560 + 62697903 62704345 L1PA6 6164 + 0 6162 6696 227 9 11 24 2 1 255 0 2 47 1 0 226 1 18 12 17 0 199 1 2 9 1 0 4 0 1 165 309 0 75 1 8 927 0 2 119 0 1 852 1 0 240 5 7 89 0 1 76 8 9 93 0 1 465 0 1 196 0 4 1675 0 7 58 0 1 48 1 0 4 chain 517449 chrX 155270560 + 62711978 62718130 L1PA5 6144 + 0 6144 5429 63 1 0 91 5 7 391 0 1 91 1 2 177 18 1 244 8 0 6 9 17 144 1 0 315 0 2 114 0 1 1503 1 0 20 0 1 405 1 2 325 1 0 329 0 3 18 0 3 396 1 0 1292 2 0 5 5 8 155 3 1 11 chain 16122 chrX 155270560 + 62725151 62725446 LTR56 451 + 36 330 137988 4 1 0 28 74 74 188 chain 55524 chrX 155270560 + 62737876 62738481 L1PA2 6032 - 372 977 55402 605 chain 33086 chrX 155270560 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62793165 L1PA3long 6157 + 5899 6157 112895 258 chain 55073 chrX 155270560 + 62795504 62796125 L1PA5 6144 + 5521 6142 55661 621 chain 547026 chrX 155270560 + 62817075 62823103 L1PA2 6032 - 3 6029 1826 2986 2 0 381 0 4 210 0 1 2191 5 0 253 chain 469220 chrX 155270560 + 62826913 62832548 L1PA4 6152 + 10 6152 8063 93 15 0 8 4 19 464 7 0 440 1 0 177 1 0 4 0 1 218 1 0 84 0 1 247 8 0 296 0 1 432 5 6 670 7 6 28 1 0 4 0 1 70 5 531 818 1 0 377 4 0 995 0 1 150 chain 375426 chrX 155270560 + 62833081 62837804 L1PA7 6471 + 31 6470 10900 402 2 3 414 0 1 218 9 8 302 0 1 214 0 1 160 8 19 867 10 5 219 0 1 90 0 2 411 5 13 70 2 1685 210 5 6 270 3 0 709 0 15 123 chain 147297 chrX 155270560 + 62841931 62843590 L1PA4 6152 - 857 2523 24995 199 4 11 1456 chain 60570 chrX 155270560 + 62843590 62844272 L1PA4 6152 + 5319 6001 52491 682 chain 13061 chrX 155270560 + 62844272 62844424 L1PA4 6152 + 6002 6151 147989 144 3 0 5 chain 30734 chrX 155270560 + 62846925 62847344 MLT2A1 477 - 74 475 82977 8 16 0 118 1 0 72 0 1 17 5 6 11 4 1 167 chain 439255 chrX 155270560 + 62847346 62853086 HERVL-int 5654 - 0 5653 9070 276 0 1 252 6 1 312 0 1 151 0 1 700 6 7 214 0 2 203 2 1 54 6 7 67 0 1 759 2 0 73 4 3 49 0 1 106 171 0 114 39 41 323 0 1 198 4 3 6 0 2 172 1 0 40 12 8 380 3 0 43 10 11 93 0 2 325 0 1 297 2 1 35 0 85 230 chain 7970 chrX 155270560 + 62850615 62850713 MLT2A1 477 - 379 477 171222 98 chain 30500 chrX 155270560 + 62853217 62853620 MLT2A1 477 - 80 477 83429 12 6 0 180 0 1 24 0 1 9 4 1 106 0 1 62 chain 239352 chrX 155270560 + 62865122 62867794 L1PA4 6152 - 13 2685 16806 2672 chain 175838 chrX 155270560 + 62867794 62869757 L1PA4 6152 + 1450 3425 21367 1244 0 5 32 0 7 687 chain 16984 chrX 155270560 + 62879800 62880074 L1PA15 4387 + 4042 4305 135636 62 2 1 25 1 0 55 1 0 22 4 0 8 1 0 45 13 10 35 chain 44448 chrX 155270560 + 62894274 62894829 LTR19B 566 - 0 566 63637 52 3 0 16 0 5 143 1 0 184 1 0 24 0 11 131 chain 5926 chrX 155270560 + 62913640 62913733 L1ME1 1623 + 1038 1129 185930 45 9 7 39 chain 9333 chrX 155270560 + 62914980 62915114 MER20 218 + 30 161 163888 53 11 8 70 chain 18762 chrX 155270560 + 62983909 62984192 L1PA11 4918 + 4232 4504 130792 99 5 0 64 1 0 12 2 1 66 13 10 4 1 0 16 chain 17395 chrX 155270560 + 62988127 62988463 L1PB3 3668 - 102 416 134522 15 54 50 19 23 7 84 0 1 4 4 2 93 1 0 39 chain 12761 chrX 155270560 + 62991770 62991985 MLT2D 439 + 199 437 149206 52 6 12 55 15 17 35 7 13 7 0 9 38 chain 50471 chrX 155270560 + 62994590 62995381 L1PA15 4387 + 3557 4326 58664 103 14 15 38 0 7 91 27 13 67 3 1 40 1 0 86 1 0 86 1 0 25 1 0 56 1 0 14 6 0 6 0 2 7 4 3 39 19 17 43 2 0 10 chain 27066 chrX 155270560 + 62996938 62997314 THE1C 375 - 0 375 96052 25 1 0 67 1 0 87 14 13 98 0 2 83 chain 6146 chrX 155270560 + 63014561 63014660 MER5A1 166 - 1 110 184033 22 12 22 65 chain 513961 chrX 155270560 + 63017361 63023787 L1PA7 6471 + 0 6466 5781 411 0 1 104 10 13 179 7 32 41 0 1 107 34 32 289 0 4 395 0 4 510 7 0 15 10 9 125 3 6 303 0 2 56 0 2 52 0 2 8 4 2 5 0 3 588 0 1 107 0 4 110 0 1 216 7 8 298 1 2 4 1 0 42 4 0 480 1 0 4 0 1 376 1 0 666 1 0 79 0 2 604 0 1 152 2 0 7 chain 25894 chrX 155270560 + 63031260 63031544 L1PA4 6152 + 5536 5817 100466 166 3 0 115 chain 30712 chrX 155270560 + 63031544 63031877 L1PA4 6152 + 5818 6151 83015 333 chain 4398 chrX 155270560 + 63037792 63037843 MLT1C 463 + 125 175 201957 12 1 0 38 chain 8720 chrX 155270560 + 63040395 63040621 L1PB1 5432 - 106 318 167085 15 9 0 15 17 22 38 1 0 15 2 1 35 36 30 12 2 1 4 1 0 24 chain 26552 chrX 155270560 + 63041713 63042074 THE1A 353 - 0 353 97832 52 0 1 106 1 0 52 0 2 30 1 0 44 9 0 66 chain 134082 chrX 155270560 + 63044674 63046235 SVA_B 1603 - 0 1597 27184 619 0 41 891 7 9 13 14 7 17 chain 14344 chrX 155270560 + 63048224 63048506 L1PB1 5432 + 5158 5417 143402 9 2 0 53 2 1 16 1 0 42 6 5 17 20 11 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 31291 chrX 155270560 + 63051438 63051814 THE1C-int 1605 + 1228 1605 82003 367 0 1 9 chain 543212 chrX 155270560 + 63058530 63064659 L1PA3long 6157 + 6 6149 2310 567 0 4 310 0 1 608 0 1 32 5 6 209 0 2 306 4 3 625 1 0 460 0 1 47 0 1 67 0 3 1405 0 1 641 0 1 842 chain 3553 chrX 155270560 + 63068678 63068717 MLT1C 463 - 55 94 214496 39 chain 527308 chrX 155270560 + 63080263 63086335 L1PA4 6152 - 6 6145 4466 146 9 11 3302 2 5 197 0 41 124 1 0 355 0 1 750 0 1 4 1 0 517 1 0 311 15 23 211 0 14 126 chain 208573 chrX 155270560 + 63093971 63101789 L1PA3long 6157 - 0 2433 18599 526 0 4 552 5388 0 430 1 0 921 chain 5079 chrX 155270560 + 63095084 63095144 L1PA3long 6157 - 1118 1178 190821 60 chain 11964 chrX 155270560 + 63095144 63095287 L1P1 4361 + 4186 4328 152340 119 1 0 23 chain 19795 chrX 155270560 + 63101789 63102005 L1PA3long 6157 + 5084 5300 127214 216 chain 76976 chrX 155270560 + 63102006 63102853 L1PA3long 6157 + 5300 6147 44984 847 chain 6338 chrX 155270560 + 63118379 63118456 L1PA7 6471 + 0 77 182480 77 chain 48176 chrX 155270560 + 63118532 63119079 L1PA4 6152 - 62 609 60339 547 chain 301625 chrX 155270560 + 63121161 63124708 L1P1 4361 - 822 4359 13337 286 0 5 934 1 0 1447 6 0 166 7 0 127 1 0 572 chain 14032 chrX 155270560 + 63124717 63124904 L1PA7 6471 + 2153 2341 144451 154 5 6 28 chain 60218 chrX 155270560 + 63124911 63125639 L1PA7 6471 + 2348 3079 52719 283 0 2 54 0 1 391 chain 24510 chrX 155270560 + 63125674 63125987 L1PA7 6471 + 3079 3392 107492 313 chain 41504 chrX 155270560 + 63125987 63126536 L1PA7 6471 + 3395 3933 67275 108 1 0 407 17 7 16 chain 115369 chrX 155270560 + 63126547 63127985 L1PA7 6471 + 4181 5615 32653 769 1 0 35 2 1 368 18 16 245 chain 3057 chrX 155270560 + 63127987 63128023 L1PA7 6471 + 5616 5652 223857 36 chain 25345 chrX 155270560 + 63128023 63128320 L1PA7 6471 + 5662 5959 102983 297 chain 36900 chrX 155270560 + 63128320 63128787 L1PA7 6471 + 5960 6428 73657 348 7 8 112 chain 8467 chrX 155270560 + 63129803 63129973 MER96B 391 + 225 390 168482 46 3 4 16 2 0 45 34 30 24 chain 118577 chrX 155270560 + 63133076 63134704 THE1B-int 1605 + 0 1605 31590 114 54 0 177 8 0 139 0 25 251 2 4 310 4 3 79 0 4 11 10 11 191 12 18 6 0 2 260 chain 77291 chrX 155270560 + 63142801 63144275 MER4-int 2692 + 1537 2681 44836 60 0 5 87 0 1 71 309 1 102 0 1 6 7 17 16 34 9 82 20 19 154 19 14 64 45 38 228 1 0 169 chain 423777 chrX 155270560 + 63156477 63161314 L1PA3long 6157 + 1316 6157 9449 129 0 1 232 0 2 75 0 1 570 6 5 278 0 1 579 0 1 748 0 1 712 0 1 200 4 0 454 0 1 850 chain 214464 chrX 155270560 + 63173084 63176289 L1PB1 5432 + 2467 5420 18196 29 3 0 334 21 1 5 1 0 81 4 0 57 0 8 260 1 0 187 4 5 145 20 19 70 7 8 49 1 4 848 17 0 51 4 0 473 221 37 8 1 0 10 6 2 11 3 1 50 2 1 16 1 0 37 7 6 16 27 15 16 28 23 20 1 0 21 1 0 13 1 0 16 chain 20185 chrX 155270560 + 63178858 63179098 AluY 311 + 38 288 126575 94 0 1 28 0 9 118 chain 136028 chrX 155270560 + 63189245 63190751 L1PA3long 6157 - 1422 2928 26827 1506 chain 125948 chrX 155270560 + 63190751 63192149 L1PA3long 6157 + 4751 6157 29117 558 0 7 508 0 1 332 chain 43417 chrX 155270560 + 63198260 63198888 MSTA-int 1630 - 0 624 64914 38 3 0 11 1 2 185 16 17 176 26 23 132 3 4 4 1 0 32 chain 25786 chrX 155270560 + 63201407 63201704 AluY 311 + 9 305 100925 124 1 0 172 chain 23139 chrX 155270560 + 63201786 63202109 L1M1 2793 + 2374 2695 114941 60 3 0 173 0 5 16 1 0 11 1 0 32 1 0 14 1 0 10 chain 35544 chrX 155270560 + 63206354 63206808 L1P1 4361 - 1381 1836 75482 325 4 5 125 chain 5185 chrX 155270560 + 63214719 63214780 THE1C 375 - 314 375 193194 61 chain 41647 chrX 155270560 + 63219322 63219807 LTR15 485 + 0 485 67094 17 1 2 462 1 0 4 chain 7070 chrX 155270560 + 63224429 63224523 L1PA16 3655 + 3492 3583 176947 86 3 0 5 chain 40613 chrX 155270560 + 63231974 63232541 L1PA10 4194 + 3538 4099 68414 79 18 19 95 0 3 217 2 1 106 10 1 40 chain 562782 chrX 155270560 + 63233135 63239166 L1HS 6032 - 1 6032 275 6031 chain 25342 chrX 155270560 + 63255397 63255801 L1PA15 4387 + 3919 4314 103008 13 1 0 172 1 0 23 15 13 4 0 1 40 1 0 18 16 14 43 15 12 42 chain 25411 chrX 155270560 + 63263577 63263881 AluSc5 308 - 4 308 102632 304 chain 504957 chrX 155270560 + 63277387 63283297 L1PA4 6152 - 0 6149 6537 6 0 5 242 2 1 1109 0 2 123 1 0 797 0 2 261 4 5 348 0 7 553 0 3 545 0 1 905 4 5 149 0 3 725 13 12 28 0 217 95 chain 43060 chrX 155270560 + 63285633 63286155 MER9a1 513 - 0 513 65343 175 1 0 286 9 1 51 chain 17894 chrX 155270560 + 63288440 63288746 L1PA13 3608 - 1718 2039 133115 56 16 17 45 5 0 48 22 41 114 chain 521070 chrX 155270560 + 63298750 63304874 L1PA4 6152 - 9 6140 5045 1688 0 1 938 2 1 399 0 1 126 0 2 204 3 1 394 0 4 5 0 1 2150 0 1 54 17 31 12 14 0 118 chain 493335 chrX 155270560 + 63305282 63311633 L1PA7 6471 + 0 6464 7209 224 1 16 173 14 13 295 1 18 223 7 16 66 0 1 60 5 52 574 4 6 508 0 2 202 2 1 182 6 0 454 10 14 384 4 2 58 0 1 74 4 3 54 5 4 29 2 1 190 3 2 61 0 1 70 1 14 108 1 2 77 0 1 435 0 4 917 5 7 16 1 4 79 0 2 34 0 1 270 23 20 113 0 1 88 0 4 84 0 1 143 2 0 5 chain 533385 chrX 155270560 + 63328611 63335910 L1PA3long 6157 - 0 6157 3796 209 0 3 954 27 13 620 0 4 1144 0 1 71 0 1 731 1 2 1234 0 3 116 1 2 139 0 128 191 1280 0 59 0 9 370 1 2 151 chain 87922 chrX 155270560 + 63334063 63335000 L1HS 6032 - 0 937 40402 937 chain 30951 chrX 155270560 + 63335000 63335329 L1HS 6032 + 4753 5082 82597 329 chain 529039 chrX 155270560 + 63351762 63357780 L1PA3long 6157 - 1 6151 4296 151 1 2 1367 0 1 1425 0 1 71 0 1 644 5 2 85 1 2 76 6 2 1156 0 3 263 0 128 457 0 2 160 4 5 146 chain 254943 chrX 155270560 + 63361540 63364554 L1PA5 6144 + 3141 6144 15984 13 0 2 122 0 1 918 0 1 22 0 1 127 1 5 274 0 1 664 2 6 289 25 0 557 chain 5836 chrX 155270560 + 63370284 63370353 THE1D-int 1627 - 791 860 186805 69 chain 471564 chrX 155270560 + 63372490 63378216 L1PA6 6164 + 0 6160 7984 368 0 9 72 8 0 118 1 0 224 0 17 90 0 7 410 0 421 598 3 0 199 0 2 47 6 10 528 0 1 35 0 1 268 1 0 527 0 1 664 0 1 4 1 0 316 22 0 380 0 4 456 0 1 224 3 4 153 chain 5578 chrX 155270560 + 63387571 63387844 L1MB7 1623 - 507 783 189298 49 155 167 19 19 11 23 1 0 7 chain 5399 chrX 155270560 + 63395357 63395417 L1PA3long 6157 + 6097 6157 190997 60 chain 15663 chrX 155270560 + 63415413 63415646 MER1B 344 + 95 336 139388 5 0 3 117 4 0 40 17 26 50 chain 41892 chrX 155270560 + 63432725 63433265 MLT2A2 560 - 4 556 66769 143 12 23 38 8 9 339 chain 38770 chrX 155270560 + 63438852 63439401 MLT2A2 560 - 10 560 71056 65 4 1 62 5 16 269 12 8 29 8 5 95 chain 50094 chrX 155270560 + 63450846 63451404 L1PA4 6152 - 11 569 58947 558 chain 31467 chrX 155270560 + 63453244 63453710 L1PA8 5853 + 5383 5853 81700 224 7 5 66 19 17 42 12 11 12 1 0 37 0 10 46 chain 28392 chrX 155270560 + 63456978 63457353 MLT2A1 477 - 98 477 91611 30 5 4 171 1 5 26 0 1 142 chain 4802 chrX 155270560 + 63457353 63457411 MSTA 426 - 368 426 197335 58 chain 24097 chrX 155270560 + 63470047 63470332 L1PA4 6152 - 2 287 109756 35 0 1 106 2 0 5 3 4 134 chain 546901 chrX 155270560 + 63472226 63478253 L1PA3long 6157 - 0 6157 1841 5251 1 129 521 0 1 102 5 6 147 chain 38407 chrX 155270560 + 63483409 63483855 L1PA4 6152 - 20 470 71565 55 0 2 76 1 3 314 chain 175029 chrX 155270560 + 63495921 63498329 L1P2 5180 - 1883 4248 21455 5 2 0 103 1 0 74 0 6 30 114 9 72 5 38 54 33 5 289 7 37 222 0 4 140 0 2 349 0 5 115 0 7 63 0 3 30 0 1 66 1 3 633 chain 13865 chrX 155270560 + 63499829 63500000 L1P3 4156 + 3706 3877 145015 171 chain 160626 chrX 155270560 + 63500000 63502196 L1PA8A 6298 + 3749 5926 23247 121 5 6 249 3 4 391 12 8 5 0 3 32 1 2 261 8 8 103 3 1 51 1 6 6 5 0 79 0 1 4 7 6 293 0 4 91 26 7 52 8 1 79 3 6 297 chain 524374 chrX 155270560 + 63502727 63508903 L1PA5 6144 + 0 6139 4733 157 11 13 1999 0 2 604 3 1 663 0 13 56 0 1 785 1 0 364 1 0 498 52 10 96 0 1 30 0 1 76 2 0 3 9 0 608 18 18 140 chain 553288 chrX 155270560 + 63516462 63522471 L1PA2 6032 - 3 6031 1039 1799 0 4 1960 0 4 1466 0 11 784 chain 160875 chrX 155270560 + 63530393 63532275 L1PA6 6164 - 10 1891 23217 758 0 2 74 0 5 420 14 5 383 0 1 233 chain 16839 chrX 155270560 + 63532275 63532465 L1PA6 6164 + 4070 4260 135050 190 chain 9293 chrX 155270560 + 63544590 63544697 LTR7Y 441 + 295 403 164096 103 0 1 4 chain 42921 chrX 155270560 + 63571357 63571899 MLT2A2 560 - 13 558 65514 367 0 1 92 8 6 60 0 4 15 chain 515902 chrX 155270560 + 63583507 63589652 L1PA6 6164 + 7 6160 5583 56 2 3 128 4 5 334 1 2 651 0 3 276 3 5 742 0 2 5 1 0 114 0 1 110 0 4 736 0 2 87 0 2 72 4 0 176 1 0 839 0 4 283 2 0 791 5 1 713 3 0 6 chain 5794 chrX 155270560 + 63590565 63590644 Tigger3c 601 + 449 540 187222 16 2 0 25 0 14 36 chain 188654 chrX 155270560 + 63600485 63602652 L1PA4 6152 - 10 2170 20178 715 9 5 120 6 1 181 0 1 484 0 1 652 chain 29794 chrX 155270560 + 63618355 63618665 AluYa5 310 - 0 310 85457 310 chain 350384 chrX 155270560 + 63620260 63624157 L1PA3long 6157 + 2261 6157 11591 435 0 1 339 0 1 77 6 5 1372 3 0 732 0 1 933 chain 4458 chrX 155270560 + 63628312 63628363 L1PA6 6164 + 4307 4358 201251 51 chain 154695 chrX 155270560 + 63628368 63630159 L1PA6 6164 + 4367 6161 24018 801 0 5 41 3 2 182 1 0 763 chain 31782 chrX 155270560 + 63633956 63634360 MSTA-int 1630 + 1227 1630 81198 230 2 1 172 chain 38792 chrX 155270560 + 63644284 63644702 L1PA2 6032 - 0 418 71026 418 chain 3956 chrX 155270560 + 63644717 63644763 MER50 708 + 640 686 208032 46 chain 10590 chrX 155270560 + 63646202 63646353 MER4A1 472 + 0 153 157876 12 16 18 123 chain 126153 chrX 155270560 + 63650177 63652062 MER4-int 2692 + 1 1963 29051 10 1 0 25 15 13 35 2 3 12 1 0 28 0 1 197 62 65 165 1 0 4 0 11 22 2 1 63 0 3 6 9 12 48 2 0 25 10 5 109 1 2 239 1 0 72 0 1 68 5 4 58 5 10 72 0 16 52 8 11 155 0 8 98 0 36 14 1 0 111 4 3 55 0 2 12 chain 31207 chrX 155270560 + 63657042 63657531 LTR2B 499 - 0 499 82152 38 73 72 227 0 1 24 2 14 100 0 1 8 3 0 14 chain 262048 chrX 155270560 + 63671053 63674475 HERVL-int 5654 - 12 5654 15580 59 21 2216 156 0 1 179 0 1 158 0 1 176 0 1 4 1 0 274 0 3 161 0 1 344 0 2 13 1 0 4 4 5 142 0 4 509 0 2 115 0 1 439 0 1 200 0 1 48 0 2 73 0 3 156 8 10 68 1 0 5 2 3 101 chain 9054 chrX 155270560 + 63694102 63694283 L1MA1 4479 - 337 514 165288 35 2 0 29 6 5 25 1 0 4 4 5 44 13 12 18 chain 283283 chrX 155270560 + 63694383 63697951 L1P2 5180 - 1526 5166 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64082342 64082925 L1PA10 4194 - 2287 2871 67157 68 0 3 5 3 0 10 0 1 52 2 0 5 4 6 23 14 14 397 chain 30586 chrX 155270560 + 64097126 64097483 L1PA4 6152 + 5806 6152 83227 133 11 0 213 chain 40176 chrX 155270560 + 64097483 64098043 L1MA2 4263 + 3434 3985 69071 149 5 0 7 0 1 43 0 1 27 1 0 146 3 0 148 2 1 9 1 0 19 chain 503530 chrX 155270560 + 64098578 64104549 L1PA5 6144 + 0 6129 6633 193 0 1 683 4 5 145 1 0 82 3 0 324 1 0 312 0 1 161 1 2 629 0 1 126 0 163 336 1 0 235 5 6 103 0 1 266 1 0 4 4 5 107 1 3 16 0 1 166 0 1 1013 1 0 203 14 1 13 0 3 420 1 0 5 9 10 64 1 2 317 chain 212993 chrX 155270560 + 64108176 64110553 L1PA4 6152 + 3762 6140 18297 1341 0 1 1036 chain 14153 chrX 155270560 + 64116451 64116796 L1PB1 5432 - 2 310 144029 4 1 0 4 1 0 12 10 5 13 1 0 22 1 0 24 2 0 14 9 6 21 10 1 8 3 0 16 2 1 43 21 19 48 3 1 9 5 1 14 1 0 8 1 0 14 chain 453046 chrX 155270560 + 64127875 64133631 L1PA7 6471 + 710 6457 8649 4 0 1 62 1 0 8 0 1 86 1 0 326 21 22 19 15 9 113 0 1 92 0 1 73 0 1 319 0 1 171 1 2 5 0 1 275 0 1 91 0 1 11 1 4 176 0 1 50 13 0 132 3 0 53 10 12 48 1 3 2069 1 0 254 0 11 154 0 1 68 21 3 175 0 3 171 1 0 248 0 1 413 chain 2892 chrX 155270560 + 64140642 64140685 MER5A 189 + 29 75 227171 27 1 4 15 chain 115288 chrX 155270560 + 64147015 64148419 L1PA7 6471 - 1 1416 32684 160 0 2 483 3 6 115 0 1 82 1 0 82 0 6 35 0 1 4 1 0 438 chain 356691 chrX 155270560 + 64154481 64159847 L1P2 5180 + 56 5178 11441 78 18 17 74 28 37 49 289 97 4 1 0 35 45 27 28 28 22 35 82 6 176 21 0 46 14 29 122 0 19 42 0 1 28 0 34 185 0 1 790 1 3 41 0 3 242 3 0 43 24 9 390 17 21 399 1 0 25 0 1 5 22 21 651 3 1 291 0 1 4 1 0 452 1 0 155 6 14 278 1 0 10 22 7 12 0 14 43 1 0 4 chain 112326 chrX 155270560 + 64161598 64164008 L1P3 4156 - 17 1990 33582 22 22 19 40 20 33 25 11 0 153 15 14 138 1 0 116 0 2 27 0 4 18 3 4 30 772 325 102 0 3 15 1 2 138 0 2 5 6 3 195 0 3 19 0 1 162 3 0 112 10 11 223 0 1 6 chain 98733 chrX 155270560 + 64169525 64170663 L1P1 4361 - 1015 2154 37092 1024 1 0 4 3 5 106 chain 143617 chrX 155270560 + 64170690 64172295 L1PA3long 6157 - 2 1614 25532 424 0 2 44 0 4 380 0 1 757 chain 164703 chrX 155270560 + 64172295 64174198 L1PA4 6152 + 4236 6141 22700 399 3 0 303 0 1 516 0 4 544 3 2 33 0 1 102 chain 182748 chrX 155270560 + 64174288 64176863 MER57-int 2662 + 113 2658 20708 18 0 1 4 1 0 48 0 5 113 2 1 10 2 0 84 0 1 4 0 6 281 4 0 130 5 3 124 9 8 129 0 1 8 4 0 328 0 2 258 0 1 18 0 1 4 1 0 205 12 9 56 0 4 285 0 2 58 12 11 90 18 12 64 40 26 17 2 1 4 1 0 10 8 5 20 1 0 9 5 0 33 7 4 29 chain 6475 chrX 155270560 + 64177296 64177398 Tigger3b 1229 - 541 642 181433 25 1 3 12 2 0 57 1 0 4 chain 155427 chrX 155270560 + 64207615 64209376 L1PA4 6152 - 0 1778 23933 857 8 13 35 0 8 297 0 4 564 chain 67451 chrX 155270560 + 64222204 64222952 SVA_C 1631 + 878 1629 49470 25 2 1 45 2 1 35 0 4 14 0 1 625 chain 32766 chrX 155270560 + 64223771 64224206 L1PA5 6144 + 3285 3725 79583 223 6 12 201 1 0 4 chain 90585 chrX 155270560 + 64224206 64225368 L1PA5 6144 + 3726 4890 39438 433 9 10 488 0 1 232 chain 29700 chrX 155270560 + 64225368 64225726 L1PA5 6144 + 4912 5270 85827 358 chain 4842 chrX 155270560 + 64225762 64225823 L1PA5 6144 + 5308 5369 196860 61 chain 63923 chrX 155270560 + 64225832 64226590 L1PA5 6144 + 5377 6135 51043 758 chain 326504 chrX 155270560 + 64238116 64242242 L1P3 4156 + 4 4139 12325 182 23 22 43 1 0 69 1 0 81 3 0 437 17 18 482 5 7 746 0 1 324 1 4 62 0 1 179 0 5 33 0 1 25 0 1 35 0 1 162 0 1 171 10 14 221 4 0 665 1 2 108 2 0 5 2 1 26 chain 19792 chrX 155270560 + 64243089 64243343 L1P1 4361 - 70 323 127842 143 5 4 106 chain 15697 chrX 155270560 + 64243343 64243525 L1PA7 6471 + 5666 5848 138746 182 chain 38545 chrX 155270560 + 64243525 64243997 L1PA7 6471 + 5849 6321 71373 354 6 0 7 0 6 105 chain 12779 chrX 155270560 + 64244000 64244146 L1PA7 6471 + 6321 6467 149140 146 chain 13855 chrX 155270560 + 64244152 64244340 L1PA16 3655 + 2998 3174 145054 80 0 2 74 14 0 20 chain 519712 chrX 155270560 + 64272994 64279104 L1PA4 6152 - 0 6152 5185 6 0 5 102 0 1 1259 0 22 469 0 2 600 1 0 509 1 0 11 1 0 778 0 4 275 5 8 262 0 1 690 26 27 175 0 4 44 0 2 896 chain 445481 chrX 155270560 + 64281042 64286754 L1PA8 5853 - 0 5745 8885 93 1 0 17 1 0 38 13 6 6 0 6 8 2 1 70 2 0 46 1 0 553 0 2 128 0 1 9 1 4 530 1 2 139 6 5 598 0 1 206 0 3 389 0 1 50 3 7 135 0 1 337 0 1 59 0 8 33 0 1 307 0 1 729 1 2 160 7 6 137 1 0 31 0 3 84 7 8 228 6 8 55 0 1 74 0 1 215 0 4 61 5 7 129 chain 397568 chrX 155270560 + 64319019 64325299 L1PA8 5853 + 109 5853 10180 193 18 6 97 1 3 160 11 0 8 20 31 27 1 4 24 7 0 153 3 4 182 3 0 99 0 1 265 6 503 141 27 8 44 0 2 6 0 1 9 0 1 8 0 4 174 5 9 12 0 2 482 0 1 58 0 4 47 1 0 114 0 1 223 1 3 9 42 48 119 1 0 538 1 0 4 5 6 60 1 0 158 0 1 17 1034 0 93 0 1 435 0 6 223 8 9 33 0 4 19 1 0 4 0 2 120 7 8 41 0 1 338 0 1 43 1 0 46 9 7 62 1 0 14 1 0 47 2 1 19 4 3 90 chain 72560 chrX 155270560 + 64322637 64323632 MER11C 1089 - 70 1089 47238 120 4 5 11 5 6 41 5 6 45 1 9 177 35 36 297 1 4 86 0 1 69 0 8 98 chain 61049 chrX 155270560 + 64336447 64338510 L1PA5 6144 - 0 2068 18885 231 1 5 87 0 2 552 2 1 452 1 0 4 0 1 733 chain 303812 chrX 155270560 + 64338541 64342070 L1PA4 6152 - 9 3546 13252 138 1 3 691 3 7 990 6 5 360 1 0 783 0 1 155 0 7 54 4 0 343 chain 70244 chrX 155270560 + 64342071 64342874 L1PA4 6152 + 1792 2596 48250 200 0 1 603 chain 14323 chrX 155270560 + 64342874 64343358 L1PA5 6144 - 2068 2550 18885 205 0 1 197 3 0 79 chain 12810 chrX 155270560 + 64351095 64351249 HERVH-int 3825 - 0 154 149018 154 chain 343746 chrX 155270560 + 64361425 64366697 L1PB1 5432 - 12 5326 11789 16 1 0 13 1 0 21 1 0 26 2 0 12 1 0 4 3 1 12 1 8 10 34 20 40 7 6 10 2 1 51 2 0 11 4 0 9 5 0 9 10 13 12 1 0 12 1 0 18 0 3 75 14 13 89 5 7 83 2 10 97 12 11 76 1 0 66 6 4 5 0 1 53 25 30 242 1 0 8 0 1 4 3 8 6 4 0 172 2 1 57 3 1 224 1 2 11 10 0 30 0 321 168 0 3 100 330 14 23 0 1 50 0 1 80 4 8 178 0 20 60 0 7 168 0 1 232 1 2 11 3 0 97 0 4 303 0 4 69 6 0 56 14 4 42 0 12 30 0 2 213 17 1 15 2 1 86 1 11 303 0 2 351 0 2 20 4 8 20 5 9 18 4 19 439 chain 23379 chrX 155270560 + 64370275 64370572 L1PA8A 6298 - 7 310 113766 36 4 8 52 2 4 203 chain 228184 chrX 155270560 + 64371546 64374120 L1PA3long 6157 + 3578 6157 17404 63 0 1 715 0 4 34 14 8 210 0 2 695 0 4 843 chain 539843 chrX 155270560 + 64377654 64383801 L1PA3long 6157 - 0 6157 2838 676 0 1 831 0 5 153 0 2 131 0 4 659 5 6 76 1 2 319 0 1 594 1 0 590 4 0 2107 chain 14712 chrX 155270560 + 64385156 64385900 L1PA8 5853 - 0 722 22015 89 5 4 19 2 1 28 31 30 70 10 8 27 15 3 11 5 0 432 chain 501152 chrX 155270560 + 64385932 64392037 L1PA5 6144 - 5 6144 6779 142 4 5 599 7 10 59 0 1 4 1 0 849 0 4 122 0 4 658 4 0 318 6 7 107 0 1 26 0 4 48 1 2 848 6 7 1145 15 6 127 11 12 853 0 12 13 0 14 132 chain 34171 chrX 155270560 + 64392040 64393768 L1PA8 5853 - 722 2478 22015 121 2 0 59 12 18 9 1 3 162 0 4 548 0 4 738 0 14 56 2 1 6 0 1 12 chain 27932 chrX 155270560 + 64393768 64394147 L1PA8 5853 - 5152 5525 91945 325 4 5 15 12 5 23 chain 14614 chrX 155270560 + 64394303 64394479 L1PA8 5853 - 5555 5733 142538 65 0 1 87 0 1 24 chain 218262 chrX 155270560 + 64396449 64399297 L1PA7 6471 + 3598 6470 17987 406 5 6 321 0 1 149 2 1 191 1 5 18 6 7 242 0 6 7 6 11 15 1 2 115 0 1 4 1 0 429 1 3 8 2 0 75 0 3 5 6 5 266 0 1 32 0 1 5 0 1 196 1 2 174 1 0 8 2 3 147 chain 29776 chrX 155270560 + 64399312 64399735 L1PA8 5853 + 2782 3190 85558 214 0 1 5 0 4 55 2 1 19 18 0 58 2 1 50 chain 46506 chrX 155270560 + 64399736 64400331 L1PA8 5853 + 3195 3790 61590 595 chain 25728 chrX 155270560 + 64400331 64400652 L1PA8 5853 + 3881 4203 101177 235 0 1 86 chain 34337 chrX 155270560 + 64400669 64401121 L1PA8 5853 + 4232 4683 77149 138 11 10 303 chain 90460 chrX 155270560 + 64401122 64402293 L1PA8 5853 + 4683 5849 39482 323 13 14 544 6 5 39 7 5 65 4 3 61 1 0 18 1 0 89 chain 32098 chrX 155270560 + 64406437 64406998 L1PB1 5432 - 10 541 80693 18 1 0 13 1 0 21 1 0 24 60 44 21 1 0 44 1 0 18 1 0 51 17 11 11 1 0 11 1 0 21 3 0 9 1 2 87 0 2 123 chain 3111 chrX 155270560 + 64407472 64407505 MADE1 96 + 57 90 222720 33 chain 319084 chrX 155270560 + 64408682 64412172 L1PA2 6032 - 1 3496 12633 13 0 6 2848 2 1 627 chain 14787 chrX 155270560 + 64414123 64414284 L1PA3long 6157 + 5996 6157 141982 161 chain 21760 chrX 155270560 + 64420000 64420303 L1PA11 4918 - 410 710 121174 13 0 3 4 1 0 16 2 0 57 3 0 20 1 0 68 1 0 33 0 2 84 chain 196100 chrX 155270560 + 64427475 64429556 L1HS 6032 - 1421 3502 19492 2081 chain 131877 chrX 155270560 + 64429556 64430963 L1HS 6032 + 4626 6032 27661 1254 1 0 152 chain 45728 chrX 155270560 + 64442532 64443114 L1PB1 5432 + 3734 4316 62289 100 0 2 126 8 5 280 0 1 68 chain 547520 chrX 155270560 + 64444265 64450411 L1PA3long 6157 + 0 6144 1766 558 0 1 425 0 1 865 0 4 230 10 0 2197 0 1 1629 1 2 231 chain 16547 chrX 155270560 + 64456909 64457118 L1PA10 4194 - 78 287 136806 209 chain 219551 chrX 155270560 + 64469819 64472301 L1PA5 6144 - 0 2486 17915 147 0 1 1368 1 0 277 0 4 689 chain 71081 chrX 155270560 + 64476668 64477489 L1PA6 6164 + 5341 6162 47898 57 1 0 604 0 1 159 chain 30547 chrX 155270560 + 64479483 64480092 L1PB1 5432 + 4848 5423 83345 65 1 0 190 20 18 21 1 0 4 1 0 10 2 0 3 2 0 9 2 0 45 9 8 16 11 10 34 1 0 11 71 54 24 1 0 22 14 12 19 chain 21160 chrX 155270560 + 64498096 64498421 MER41B 635 + 219 547 123344 199 4 7 25 34 33 24 0 1 39 chain 92786 chrX 155270560 + 64502384 64503513 L1P1 4361 + 3159 4291 38720 62 7 11 916 1 0 143 chain 2895 chrX 155270560 + 64515056 64515090 L1PBa 3878 + 2296 2330 227111 34 chain 55046 chrX 155270560 + 64520722 64521715 L1PB1 5432 + 4473 5414 55677 18 20 24 114 7 5 73 3 1 203 32 35 152 2 7 10 27 0 18 6 1 10 1 0 12 2 0 3 2 0 7 5 2 52 2 1 15 1 0 44 1 0 8 32 22 4 0 1 11 3 1 5 1 0 9 5 3 26 1 0 23 1 0 11 1 0 10 chain 327960 chrX 155270560 + 64528131 64532030 L1PA6 6164 + 2258 6161 12277 67 0 1 73 0 4 782 5 0 31 2 1 389 0 2 88 1 2 34 16 10 499 1 0 261 0 5 399 0 1 411 0 4 82 1 0 757 chain 2657 chrX 155270560 + 64537074 64537242 L1PA13 3608 + 1429 1595 230926 25 123 121 20 chain 50626 chrX 155270560 + 64537274 64538681 L1PB1 5432 - 5 822 58560 4 1 0 11 1 0 8 1 0 13 1 0 21 1 0 22 7 6 11 7 4 17 27 14 15 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 10 1 0 12 168 19 10 0 3 207 1 2 91 4 0 115 410 0 65 0 1 11 chain 84550 chrX 155270560 + 64543223 64544241 L1PA8 5853 - 154 1163 41701 6 3 0 14 1 0 71 2 0 46 1 0 547 7 5 320 chain 198082 chrX 155270560 + 64548445 64550696 L1PA4 6152 - 9 2414 19351 66 0 7 1166 0 1 380 0 145 597 0 1 42 chain 159722 chrX 155270560 + 64552035 64554369 MER41-int 2638 - 2 2275 23373 182 1 2 243 6 0 88 3 5 20 3 0 37 77 7 107 0 1 33 2 0 60 3 0 74 7 6 101 1 0 72 0 1 150 1 3 59 6 5 16 0 2 39 4 3 101 1 0 87 1 0 30 1 4 65 1 0 200 10 24 89 6 7 15 0 1 24 2 1 144 0 1 4 10 13 51 2 1 95 chain 74198 chrX 155270560 + 64567257 64568117 L1PA5 6144 + 5275 6140 46414 536 2 1 87 8 12 90 0 2 137 chain 146099 chrX 155270560 + 64573448 64575197 L1P3 4156 + 401 2157 25147 508 2 0 137 0 6 105 0 2 597 0 1 400 chain 102882 chrX 155270560 + 64577416 64578699 L1P2 5180 + 1835 3129 36026 57 0 1 434 11 7 168 0 1 68 0 13 545 chain 185767 chrX 155270560 + 64581468 64584028 HERVH-int 3825 + 1437 3825 20435 98 29 34 33 0 1 4 1 0 347 0 4 107 21 37 47 2 0 259 0 1 5 5 4 277 6 3 102 11 0 173 165 0 42 1 0 126 15 0 684 chain 62490 chrX 155270560 + 64593057 64593771 L1PA5 6144 + 5420 6131 51683 645 3 0 66 chain 521362 chrX 155270560 + 64598478 64604401 L1PA3long 6157 + 0 6156 5021 67 0 3 83 1 2 403 0 1 222 0 128 1410 0 4 249 0 1 931 0 1 45 0 1 1140 0 1 615 1 0 9 0 86 601 1 8 145 chain 362149 chrX 155270560 + 64605354 64609654 L1P1 4361 - 43 4360 11318 13 1 0 92 1 4 54 7 8 495 1 0 454 0 1 630 0 4 179 0 1 28 1 2 1115 1 0 294 0 4 77 0 1 214 6 7 469 13 16 155 chain 51970 chrX 155270560 + 64609661 64610283 L1PA5 6144 + 5508 6132 57638 227 1 2 141 1 0 99 0 1 18 0 1 135 chain 115255 chrX 155270560 + 64611673 64613145 SVA_B 1603 + 44 1603 32699 25 1 6 544 0 37 38 15 55 62 16 18 48 1 43 15 0 1 7 4 5 82 37 0 255 0 1 71 3 0 240 2 0 6 chain 5757 chrX 155270560 + 64626650 64626717 MER52D 1964 + 117 185 187581 40 0 1 27 chain 96241 chrX 155270560 + 64642418 64644015 L1PA7 6471 - 1 2369 37751 80 0 1 64 16 17 147 9 10 50 327 0 237 2 5 159 13 15 68 0 3 192 0 1083 78 0 1 80 7 10 68 chain 168353 chrX 155270560 + 64644790 64647219 L1PA10 4194 - 44 2480 22244 28 9 6 159 1 0 352 3 1 6 0 8 432 6 7 39 0 1 132 30 29 90 0 1 44 3 4 75 5 11 16 0 2 36 34 15 7 1 0 25 6 8 6 1 0 109 8 10 265 0 4 58 9 14 34 1 0 4 0 1 189 10 13 141 0 1 8 2 0 13 8 9 4 1 0 19 chain 38194 chrX 155270560 + 64650228 64650661 L1PA5 6144 - 0 436 71843 11 2 5 420 chain 40821 chrX 155270560 + 64658332 64658821 MER9a1 513 - 0 513 68146 66 0 2 174 0 22 249 chain 237595 chrX 155270560 + 64658821 64661901 HERVK9-int 4720 - 0 4684 16901 129 1 4 109 0 1 39 0 96 233 2 1 208 0 48 214 0 10 174 118 649 385 0 924 449 0 1 4 1 0 83 1 0 64 1 0 4 0 1 728 1 0 30 10 8 66 1 0 4 8 5 13 chain 40844 chrX 155270560 + 64663220 64663729 MER9a1 513 - 0 513 68106 33 18 0 209 0 22 249 chain 12641 chrX 155270560 + 64664504 64664658 THE1B-int 1605 + 0 154 149679 154 chain 4214 chrX 155270560 + 64669540 64669628 L1PB3 3668 + 3482 3566 204374 16 2 1 4 1 0 21 10 8 34 chain 67941 chrX 155270560 + 64671980 64673869 L1PB1 5432 + 3382 5359 49263 351 1 4 103 324 2 98 0 3 91 3 0 130 549 982 10 2 0 3 2 0 9 12 10 42 2 1 15 1 0 44 1 0 16 7 4 13 9 0 13 3 1 5 1 0 14 2 0 13 chain 526492 chrX 155270560 + 64673885 64681728 L1PA4 6152 + 2 6143 4546 232 0 10 403 0 1 362 0 1 1309 1 0 23 0 2 30 1732 0 923 1 2 152 0 2 1844 0 4 232 0 1 11 0 2 130 0 1 449 0 6 9 chain 149786 chrX 155270560 + 64676346 64677961 SVA_E 1901 + 0 1901 24650 145 4 0 179 3 0 493 1 0 12 1 295 777 chain 34265 chrX 155270560 + 64682529 64683053 L1PA16 3655 + 3125 3619 77257 79 3 2 84 3 1 278 11 8 10 28 9 7 5 0 16 chain 8060 chrX 155270560 + 64683185 64683303 L1PB 1623 - 135 250 170695 4 1 0 30 2 1 7 1 0 73 chain 7795 chrX 155270560 + 64688634 64688733 L1PB3 3668 - 1318 1415 172328 41 2 0 56 chain 9491 chrX 155270560 + 64745534 64745679 MER85 139 + 0 139 163116 95 24 18 26 chain 43572 chrX 155270560 + 64758739 64759970 MER41A 554 + 13 554 64717 106 1 0 68 1 0 185 352 1 59 337 0 122 chain 28168 chrX 155270560 + 64762290 64762659 MER4A1 472 + 84 472 92409 141 0 21 150 10 8 68 chain 21422 chrX 155270560 + 64763112 64763371 LTR8 732 - 459 721 122435 244 0 2 11 0 1 4 chain 51433 chrX 155270560 + 64773492 64774085 LTR10C 591 + 0 591 58017 10 1 0 209 1 0 372 chain 75606 chrX 155270560 + 64775803 64777126 L1PA13 3608 - 1794 2825 45707 297 8 12 54 318 10 260 1 0 19 0 4 50 4 2 59 1 0 83 5 13 4 0 1 109 1 4 50 chain 495300 chrX 155270560 + 64782619 64789658 L1PA7 6471 - 13 6468 7109 746 2 1 8 2 3 15 331 0 63 2 0 52 0 1 569 0 2 44 1 0 146 0 1 4 7 6 96 9 0 29 0 4 140 1 0 526 1 0 116 0 297 103 8 6 305 0 1 532 0 1 6 50 11 219 4 5 51 0 8 312 1 0 103 519 0 373 0 1 152 6 14 104 15 14 586 5 4 64 20 19 62 0 1 529 chain 44172 chrX 155270560 + 64787229 64787742 MER9a1 513 - 0 513 63981 513 chain 25578 chrX 155270560 + 64804555 64805317 L1PA15 4387 - 96 522 101834 21 6 3 50 1 0 6 9 5 10 13 12 15 4 0 37 2 1 25 325 6 168 1 0 40 8 6 21 chain 145345 chrX 155270560 + 64832764 64834549 L1PA7 6471 - 4 1801 25274 10 1 0 148 1 2 21 0 5 332 0 1 136 0 3 188 2 0 5 0 2 287 10 11 367 2 0 133 0 1 5 0 2 91 0 1 46 chain 548473 chrX 155270560 + 64834582 64840614 L1PA2 6032 - 0 6032 1644 2567 0 1 3208 1 0 256 chain 25284 chrX 155270560 + 64847181 64847526 THE1A 353 - 0 353 103295 242 1 0 36 2 10 22 7 8 35 chain 122941 chrX 155270560 + 64847538 64849378 THE1A-int 1579 - 12 1570 30070 429 9 23 74 8 21 122 0 3 319 1 0 134 0 2 17 313 0 414 chain 27491 chrX 155270560 + 64849387 64849742 THE1A 353 - 0 353 94676 151 1 0 92 2 1 19 1 0 7 1 2 81 chain 24985 chrX 155270560 + 64868139 64868444 AluSx1 309 + 5 308 104888 287 2 0 16 chain 24567 chrX 155270560 + 64880152 64881187 L1P4 1494 - 994 1399 107159 280 689 61 13 2 1 17 2 1 32 chain 3047 chrX 155270560 + 64905760 64905792 HY4 93 + 61 93 224059 32 chain 19852 chrX 155270560 + 64913106 64913328 L1P1 4361 - 1152 1375 127646 114 0 1 108 chain 5704 chrX 155270560 + 64928455 64928538 L1MA5A 2387 - 231 313 188071 48 7 6 28 chain 59636 chrX 155270560 + 64934986 64935947 L1PA13 3608 - 60 990 53032 7 2 0 6 1 0 10 15 8 15 6 1 10 6 3 22 1 0 18 2 0 5 2 0 38 18 14 57 1 0 31 6 1 28 2 0 106 16 15 13 0 1 106 6 5 279 7 9 100 5 8 14 chain 6088 chrX 155270560 + 64968085 64968253 L1PB1 5432 - 5 150 184502 5 2 0 18 1 0 13 1 0 21 1 0 21 38 31 10 16 6 6 1 0 14 chain 506790 chrX 155270560 + 64979256 64985590 L1PA7 6471 - 3 6381 6415 847 2 0 14 0 4 105 27 1 130 1 0 4 0 1 154 0 1 230 0 1 22 1 2 88 3 9 183 0 4 139 0 4 192 6 5 137 0 1 190 3 0 452 0 4 47 1 0 397 0 4 12 0 1 443 1 2 91 0 1 280 0 1 4 1 0 9 0 20 119 4 3 108 3 1 24 0 1 222 0 1 39 0 1 109 0 3 207 9 15 357 0 14 225 1 0 379 0 1 190 0 1 122 chain 19470 chrX 155270560 + 64987692 64988059 MSTA 426 + 0 402 128753 59 9 3 48 10 34 51 62 58 6 0 1 36 1 21 85 chain 114770 chrX 155270560 + 64998147 64999541 L1P1 4361 + 2948 4341 32855 348 0 1 213 1 0 638 1 0 47 0 2 108 1 0 23 2 1 12 chain 108449 chrX 155270560 + 65000002 65001318 L1PA6 6164 + 4832 6149 34577 65 8 1 389 0 1 20 0 3 56 1 2 390 0 1 73 0 1 169 7 8 102 0 9 8 9 0 19 chain 24969 chrX 155270560 + 65015104 65015415 AluY 311 + 0 305 104962 57 6 0 248 chain 304816 chrX 155270560 + 65018935 65022437 L1PA4 6152 + 2603 6143 13216 1766 0 1 638 0 5 244 0 2 317 0 2 112 0 28 425 chain 30241 chrX 155270560 + 65022452 65022814 L1PA5 6144 + 5761 6130 84082 156 0 7 206 chain 64394 chrX 155270560 + 65039592 65040359 L1PA7 6471 + 5683 6469 50845 62 0 18 107 1 0 173 0 1 391 0 1 33 chain 13492 chrX 155270560 + 65043601 65043770 THE1A-int 1579 - 0 169 146382 9 1 2 6 1 0 152 chain 141609 chrX 155270560 + 65044064 65045649 L1PA3long 6157 + 4554 6157 25879 1085 0 18 343 0 1 13 1 0 143 chain 163924 chrX 155270560 + 65053541 65055327 L1PA2 6032 - 1205 2991 22817 1786 chain 110833 chrX 155270560 + 65055327 65056537 L1PA2 6032 + 4818 6028 33907 1210 chain 494672 chrX 155270560 + 65070540 65076634 L1PA6 6164 - 2 6164 7133 8 2 0 127 3 0 695 1 2 9 0 1 4 3 1 10 0 1 56 0 7 518 0 1 356 0 4 29 1 0 112 6 10 458 1 56 373 8 0 66 7 13 29 0 1 25 0 1 4 2 3 456 13 8 7 0 5 170 1 0 66 6 0 884 0 1 337 1 0 738 11 10 35 5 6 54 29 36 172 7 8 189 chain 41709 chrX 155270560 + 65090871 65091618 L1PA11 4918 - 340 999 67018 11 2 0 13 1 0 14 30 28 24 6 5 9 2 0 67 2 0 12 8 7 54 4 0 5 1 0 121 0 1 49 0 15 10 110 22 192 chain 5209 chrX 155270560 + 65091624 65091684 L1PBa 3878 - 864 924 192921 60 chain 124605 chrX 155270560 + 65095693 65097058 L1PA3long 6157 - 525 1894 29507 324 0 4 1041 chain 49268 chrX 155270560 + 65097058 65097594 L1PA3long 6157 + 5621 6157 59537 536 chain 498452 chrX 155270560 + 65107860 65114658 L1PA6 6164 - 2 6164 6928 455 0 2 360 0 1 22 0 4 270 4 0 682 0 4 839 1 0 113 648 0 134 0 2 79 25 26 674 0 1 484 0 1 62 0 1 256 1 3 101 0 1 114 0 1 652 1 18 233 1 0 117 19 0 37 18 19 71 2 1 36 2 1 285 chain 53182 chrX 155270560 + 65110643 65111229 L1PA3long 6157 - 0 589 56903 282 0 3 304 chain 27736 chrX 155270560 + 65118966 65119317 THE1A-int 1579 - 6 364 93919 98 0 7 253 chain 44358 chrX 155270560 + 65145874 65146508 LTR9B 643 - 12 643 63742 27 1 0 73 0 14 86 1 2 82 0 1 10 2 3 123 10 9 101 30 12 88 chain 41496 chrX 155270560 + 65147127 65147619 LTR10F 562 - 0 562 67283 331 0 70 161 chain 150196 chrX 155270560 + 65147916 65150255 HERVIP10FH-int 2884 - 61 2735 24587 34 10 4 14 1 0 16 1 0 50 1 0 53 1 0 13 1 0 96 0 1 167 8 5 96 1 0 21 5 4 42 0 1 156 1 0 201 374 723 25 0 1 29 0 1 443 1 0 195 0 1 4 1 0 29 3 0 97 0 4 15 0 1 73 2 0 59 chain 43920 chrX 155270560 + 65152294 65152897 LTR10F 562 - 0 562 64309 190 2 4 95 1 0 42 14 0 29 28 0 202 chain 208467 chrX 155270560 + 65154117 65156448 L1PA3long 6157 - 0 2331 18601 2331 chain 268290 chrX 155270560 + 65156448 65159449 L1PA3long 6157 + 822 3824 15275 418 0 1 924 0 1 531 1 0 1127 chain 20825 chrX 155270560 + 65169996 65170261 AluSg7 307 - 14 283 124522 13 4 7 146 0 1 102 chain 219922 chrX 155270560 + 65171219 65175357 L1PB1 5432 - 12 3139 17881 8 0 1 7 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 10 1 16 1 0 44 18 16 53 2 0 9 6 2 9 1 0 11 2 1 27 10 6 193 1 5 89 3 0 192 2 0 268 0 2 15 1 0 346 1 0 24 1 0 5 0 1 88 338 0 43 5 6 93 5 7 352 1 0 4 0 1 93 1 0 223 2 1 209 6 5 7 327 0 4 0 1 205 332 15 9 1 0 35 16 12 7 0 4 35 0 5 10 30 21 73 10 17 84 chain 15863 chrX 155270560 + 65178467 65178762 L1MA3 4352 + 4017 4282 138765 76 63 41 101 6 0 24 2 0 23 chain 285323 chrX 155270560 + 65184257 65187505 L1PA5 6144 + 2878 6131 14335 98 0 1 995 0 1 1308 5 6 24 1 2 681 1 0 6 0 2 129 chain 111992 chrX 155270560 + 65194547 65195875 SVA_B 1603 - 0 1578 33669 40 0 1 478 5 0 108 1 0 14 13 93 4 1 0 13 1 0 185 0 153 440 11 35 14 chain 27716 chrX 155270560 + 65198245 65198678 L1PA13 3608 - 120 540 93988 20 1 0 20 2 0 5 3 1 35 19 16 55 1 0 63 2 0 111 6 5 25 1 0 64 chain 21812 chrX 155270560 + 65203021 65203316 L1PA10 4194 + 3867 4161 120973 28 9 12 209 3 0 34 1 0 11 chain 6453 chrX 155270560 + 65280794 65280892 L1PB1 5432 - 8 100 181618 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 chain 300059 chrX 155270560 + 65280997 65285045 L1PBa1 4058 - 18 4048 13421 42 1 0 14 25 20 10 2 1 15 1 0 19 1 0 4 2 1 19 2 0 15 7 0 12 1 0 17 3 1 108 2 0 38 0 7 25 1 0 6 1 0 92 1 0 25 3 1 113 1 0 195 1 11 416 5 4 244 2 1 104 7 0 293 0 13 81 4 1 410 2 5 51 6 4 84 2 0 67 1 0 343 1 0 109 25 37 127 1 2 209 10 15 179 12 0 191 0 3 126 0 1 53 1 0 5 7 5 10 14 4 22 chain 143578 chrX 155270560 + 65286019 65287575 L1PA2 6032 + 4476 6032 25548 1556 chain 4642 chrX 155270560 + 65288162 65288236 L1MA5A 2387 - 81 157 199154 10 1 0 36 3 6 24 chain 79009 chrX 155270560 + 65299838 65300682 L1PA2 6032 + 5179 6023 44059 844 chain 20333 chrX 155270560 + 65305221 65305449 L1PA4 6152 + 5915 6143 126123 228 chain 5175 chrX 155270560 + 65307545 65307607 L1PA16 3655 + 3140 3202 193297 62 chain 12141 chrX 155270560 + 65307736 65307985 L1PB1 5432 - 105 327 151646 30 8 4 10 16 6 40 1 0 16 2 1 50 3 1 10 2 0 3 2 0 10 1 0 7 2 1 24 3 0 9 chain 197110 chrX 155270560 + 65314155 65316874 L1PA8A 6298 + 3656 6291 19418 45 14 0 84 4 0 89 0 5 65 5 6 268 0 3 35 29 0 80 3 8 248 0 5 228 4 1 209 0 1 165 0 14 154 17 4 116 1 6 85 2 1 15 0 1 28 0 3 44 10 9 38 0 11 179 80 7 375 chain 505438 chrX 155270560 + 65322141 65328283 L1PA6 6164 - 4 6164 6499 1422 1 0 105 1 0 317 4 5 8 0 2 128 17 8 343 0 1 125 1 0 452 0 4 49 9 9 848 1 2 479 0 1 226 11 16 356 1 0 166 8 9 262 4 21 286 2 1 151 0 1 5 0 2 14 10 5 134 0 1 196 chain 39196 chrX 155270560 + 65341086 65341534 L1PA5 6144 - 0 448 70461 448 chain 33588 chrX 155270560 + 65341551 65342024 L1PA8 5853 - 0 461 78259 87 8 7 18 2 1 45 16 10 6 1 0 67 3 1 47 1 0 172 chain 79185 chrX 155270560 + 65355011 65356005 L1PA7 6471 - 1 1001 43957 162 1 0 44 0 3 558 0 1 81 1 4 147 chain 79312 chrX 155270560 + 65356832 65357675 L1HS 6032 - 0 843 43905 843 chain 40205 chrX 155270560 + 65357675 65358102 L1HS 6032 + 4731 5158 68748 427 chain 6039 chrX 155270560 + 65371075 65371358 L1MA7 2200 - 171 423 184896 31 100 84 43 67 58 27 6 0 9 chain 141194 chrX 155270560 + 65393884 65400457 L1PB1 5432 - 19 4470 13910 9 1 0 13 1 0 21 1 0 17 31 26 19 25 14 13 1 0 29 5 0 6 7 11 16 1 0 52 27 20 9 1 0 24 17 15 207 9 10 33 4 0 45 3 0 183 8 5 151 4 10 180 0 4 189 1 2 345 15 9 85 0 1 434 4 6 60 22 5 127 3055 1024 133 20 4 7 4 0 283 7 12 148 0 7 10 36 8 5 2 0 343 4 1 61 chain 33057 chrX 155270560 + 65396342 65396715 L1PA4 6152 - 0 372 79124 260 1 0 112 chain 142264 chrX 155270560 + 65397789 65399383 L1PA5 6144 - 1 1595 25763 1594 chain 564984 chrX 155270560 + 65400538 65406570 L1HS 6032 - 0 6032 208 256 1 0 5577 0 1 198 chain 19440 chrX 155270560 + 65406570 65407475 L1PB1 5432 - 4470 5355 13910 137 1 0 229 5 0 38 0 5 8 22 1 97 5 0 180 4 11 7 1 0 6 4 5 161 chain 28081 chrX 155270560 + 65432880 65433202 L1PA3long 6157 - 0 324 92707 5 0 2 317 chain 153141 chrX 155270560 + 65436168 65438379 L1PBa 3878 + 258 2519 24211 106 12 5 6 0 7 52 2 19 12 0 1 59 1 0 82 13 13 7 0 1 10 5 6 22 1 0 157 14 45 45 3 7 60 12 18 150 2 1 5 0 1 99 17 16 205 2 1 128 3 5 13 2 0 197 1 0 4 0 1 108 4 0 98 0 9 123 0 1 40 0 1 70 16 3 188 17 16 38 chain 40371 chrX 155270560 + 65438392 65438855 LTR2 463 - 0 463 68777 463 chain 426663 chrX 155270560 + 65438855 65443942 Harlequin-int 5206 - 0 5081 9381 176 0 4 1482 0 2 247 0 1 4 2 1 108 3 1 44 1 0 569 1 0 554 0 1 453 1 0 351 1 4 522 1 0 155 0 1 50 1 0 106 2 0 211 0 1 9 12 0 14 0 3 7 chain 39170 chrX 155270560 + 65445681 65446143 LTR2 463 - 0 463 70510 314 0 1 148 chain 14563 chrX 155270560 + 65449081 65449433 L1PB1 5432 + 5106 5422 142697 8 5 0 16 35 29 9 2 0 49 9 8 11 1 0 45 1 0 13 2 0 8 16 6 18 9 6 14 2 0 14 0 1 4 7 5 21 1 0 13 1 0 18 chain 236427 chrX 155270560 + 65449616 65452180 L1PA2 6032 - 0 2564 16959 2564 chain 37881 chrX 155270560 + 65458555 65459002 MER9a2 513 - 63 513 72306 369 0 2 60 1 2 17 chain 74615 chrX 155270560 + 65464872 65465700 L1P1 4361 + 2031 2859 46202 828 chain 98751 chrX 155270560 + 65511114 65512207 L1PA3long 6157 - 9 1120 37087 495 0 18 598 chain 19009 chrX 155270560 + 65517019 65517244 LTR17 781 - 531 781 130091 203 0 25 22 chain 147530 chrX 155270560 + 65517558 65519281 HERV17-int 4347 - 1 1714 24956 995 9 8 201 9 0 509 chain 257554 chrX 155270560 + 65525358 65528975 L1PA7 6471 - 3 3328 15842 145 14 15 171 0 1 372 4 0 140 0 3 672 2 0 67 10 1 93 307 0 13 0 3 102 0 4 344 0 1 13 12 23 83 13 14 174 1 0 4 9 10 233 6 10 263 0 1 147 1 0 122 4 5 76 chain 98461 chrX 155270560 + 65528975 65530255 L1PA7 6471 + 1761 3136 37142 7 0 11 12 8 9 318 6 7 41 0 5 92 9 11 320 1 0 5 0 2 17 3 74 17 0 1 242 0 1 30 3 0 117 0 4 32 chain 92474 chrX 155270560 + 65534237 65535306 L1PA4 6152 - 12 1083 38822 135 4 7 179 2 1 749 chain 6839 chrX 155270560 + 65539382 65539474 L1PA8 5853 - 182 273 178662 63 2 0 5 1 2 21 chain 11272 chrX 155270560 + 65539474 65539633 L1PA8 5853 + 5696 5853 155151 44 2 1 18 2 1 93 chain 4390 chrX 155270560 + 65541621 65541669 L1MA2 4263 - 1382 1430 202080 48 chain 5819 chrX 155270560 + 65549853 65549950 LTR12D 1347 + 1023 1121 186971 26 1 0 26 7 6 25 2 5 10 chain 129738 chrX 155270560 + 65557726 65559459 L1PA8 5853 - 4 1735 28142 88 2 1 19 2 1 39 3 4 5 1 0 13 2 1 68 2 0 46 1 0 43 0 1 434 0 2 75 0 2 334 17 16 539 chain 68912 chrX 155270560 + 65559459 65560245 L1PA3long 6157 + 5367 6152 48807 29 1 0 756 chain 421666 chrX 155270560 + 65567127 65571946 L1PA3long 6157 + 1327 6157 9496 127 5 6 746 1 3 1737 0 1 1126 0 1 236 0 4 415 0 2 269 9 0 6 0 9 142 chain 415124 chrX 155270560 + 65591117 65596546 L1PA7 6471 - 2 6098 9664 10 2 0 141 0 3 7 9 0 401 25 10 197 0 2 70 1 4 270 5 0 549 0 2 257 5 9 16 1 3 272 11 10 234 17 0 160 8 6 25 0 1 43 0 1 269 1 0 114 0 667 351 0 1 34 0 3 5 1 2 5 3 0 158 5 7 45 8 7 126 1 0 4 0 1 36 0 1 170 0 2 358 0 3 41 1 0 83 6 5 619 1 0 13 15 41 151 45 47 24 chain 237413 chrX 155270560 + 65608006 65610778 L1PA5 6144 - 7 2759 16914 105 1 0 37 8 1 703 17 0 393 0 3 488 0 1 124 0 2 560 2 1 334 chain 44714 chrX 155270560 + 65620165 65620659 L1PA3long 6157 - 0 494 63369 494 chain 509214 chrX 155270560 + 65637637 65643988 L1PA4 6152 - 0 6152 6227 6 0 2 105 0 1 131 7 9 75 5 9 198 0 5 436 0 6 535 1 0 48 240 8 1407 1 2 723 1 5 184 0 6 309 1 0 412 1 2 84 1 0 201 1 2 491 5 6 4 1 0 151 7 8 54 0 1 104 4 5 417 chain 14742 chrX 155270560 + 65639210 65639394 L1PA4 6152 + 5239 5425 142131 137 1 3 46 chain 116254 chrX 155270560 + 65646101 65647488 L1PA3long 6157 + 4 1521 32182 133 29 30 84 4 5 521 1 129 615 chain 127721 chrX 155270560 + 65647488 65648917 L1PA3long 6157 + 4728 6157 28638 1429 chain 90268 chrX 155270560 + 65649840 65650902 L1PA6 6164 - 4 1066 39551 1062 chain 2940 chrX 155270560 + 65651011 65651045 LTR9B 643 - 599 633 226332 34 chain 523315 chrX 155270560 + 65673683 65679824 L1PA4 6152 + 0 6141 4835 570 0 1 296 0 2 1077 1 0 507 2 0 1268 5 6 908 1 0 1506 chain 10101 chrX 155270560 + 65684007 65684123 L1PA6 6164 - 5 121 160083 116 chain 159385 chrX 155270560 + 65684131 65686148 HERVK-int 6823 - 1715 3738 23418 863 0 1 178 1 0 4 1 0 4 0 2 230 0 2 7 1 0 11 10 11 326 0 3 381 chain 133747 chrX 155270560 + 65686453 65687934 L1PA3long 6157 - 1 1482 27269 1481 chain 45399 chrX 155270560 + 65687934 65688438 L1PA3long 6157 + 4154 4658 62506 504 chain 32797 chrX 155270560 + 65699665 65700110 MLT2A1 477 - 0 477 79537 42 2 0 9 6 42 214 4 1 28 0 1 140 chain 19518 chrX 155270560 + 65700110 65700377 HERVL-int 5654 - 0 274 128600 218 0 1 4 1 9 9 3 1 32 chain 81169 chrX 155270560 + 65700387 65701652 L1PA4 6152 - 11 992 43102 322 0 1 91 0 1 415 296 14 64 7 4 60 1 0 9 chain 27464 chrX 155270560 + 65701216 65701511 L1PA2 6032 - 0 295 94763 295 chain 374121 chrX 155270560 + 65710862 65715542 L1PA7 6471 + 1800 6469 10958 544 1 0 297 15 6 382 3 1 189 6 11 273 1 0 506 1 0 617 1 2 420 9 0 575 0 6 71 0 2 8 1 0 597 1 2 149 2 0 11 chain 3265 chrX 155270560 + 65744126 65744631 L1PA4 6152 - 1 505 45119 339 1 0 165 chain 427 chrX 155270560 + 65744654 65744880 L1PA4 6152 + 5398 5625 120433 79 1 2 146 chain 434101 chrX 155270560 + 65754467 65761554 HERVL-int 5654 + 0 5654 9211 592 5 6 57 2 0 247 1109 21 12 16 0 103 1 3 82 1 2 288 22 23 197 11 8 83 0 2 179 0 2 254 0 1 253 0 3 368 1 3 182 0 1 90 11 10 168 1 0 424 7 0 1143 1 2 82 0 1 197 0 1 134 2 5 207 0 1 141 337 0 34 1 0 42 chain 3872 chrX 155270560 + 65755392 65755991 L1PA4 6152 - 505 1104 45119 599 chain 531 chrX 155270560 + 65755991 65756272 L1PA4 6152 + 5697 5976 120433 195 2 0 84 chain 14615 chrX 155270560 + 65756272 65756446 L1PA4 6152 + 5978 6152 142535 174 chain 161976 chrX 155270560 + 65770715 65772859 L1PA8 5853 - 6 2171 23069 87 1 0 5 16 15 52 1 0 6 1 4 70 2 0 42 3 2 184 0 9 357 0 7 283 2 1 127 1 0 6 8 9 80 2 0 5 0 2 328 0 1 19 3 6 124 0 2 108 14 17 207 chain 485746 chrX 155270560 + 65773335 65782453 L1PA7 6471 + 1 6434 7529 139 9 15 46 7 6 205 9 0 105 11 14 456 7 8 136 0 1 28 0 2 144 76 0 317 0 1 128 1 0 6 0 1 597 5 6 123 1 0 154 0 2 31 2 1 716 2 1 26 0 1 86 1 0 97 3 6 230 2 0 96 0 2 267 1 0 291 0 1 4 2 6 227 0 5 221 1 0 251 0 1 19 1 0 82 9 10 19 1 0 7 0 1 246 1 2 29 1 2 123 0 1 425 14 8 17 0 10 3 6 0 14 2627 0 72 17 10 7 0 1 7 0 7 104 chain 155084 chrX 155270560 + 65779748 65781439 L1PA2 6032 - 7 1700 23970 852 0 1 104 0 1 735 chain 70931 chrX 155270560 + 65781439 65782228 L1PA2 6032 + 3503 4292 47806 789 chain 190862 chrX 155270560 + 65783644 65785846 L1PA4 6152 - 1 2218 19964 334 1 2 93 0 1 415 3 7 262 0 9 324 0 1 714 1 0 55 chain 121404 chrX 155270560 + 65785846 65787266 L1P1 4361 + 2907 4328 30565 178 4 6 189 0 1 395 1 0 198 0 1 276 1 0 154 1 0 23 chain 42714 chrX 155270560 + 65788975 65789488 MER9a3 513 - 0 513 65755 204 1 0 4 0 1 304 chain 86593 chrX 155270560 + 65794361 65795491 L1PA8 5853 - 10 1276 40933 82 2 1 19 2 1 49 16 13 68 2 0 46 5 4 36 0 3 437 0 141 366 chain 38866 chrX 155270560 + 65802210 65802651 L1PA3long 6157 + 5714 6156 70922 425 0 1 16 chain 263300 chrX 155270560 + 65805142 65808485 L1PA7 6471 - 3 3750 15520 149 1 0 32 0 2 7 2 0 146 0 1 418 0 1 10 0 2 70 0 8 290 6 0 667 0 13 70 0 3 242 16 18 132 3 4 181 0 4 66 6 1 98 1 0 310 5 1 36 1 0 35 0 385 190 5 6 24 0 1 124 chain 4311 chrX 155270560 + 65814612 65814677 L1MB8 1703 - 295 361 203076 15 4 5 46 chain 379789 chrX 155270560 + 65845615 65851151 L1PB1 5432 + 60 5384 10760 608 0 1 93 2 0 120 13 15 81 2 1 74 100 0 337 32 28 422 54 0 413 1 0 41 0 6 194 4 0 6 9 4 239 7 8 83 4 0 226 0 1 666 5 6 101 0 2 116 8 4 6 0 4 660 2 0 52 0 1 129 1 0 4 4 3 112 266 240 52 1 0 18 1 0 43 1 0 16 25 12 19 8 5 14 2 0 24 1 0 14 chain 478235 chrX 155270560 + 65864676 65870281 L1PA5 6144 - 0 6141 7792 174 0 1 655 0 1 16 4 5 600 0 1 1220 5 6 209 1 3 80 1 0 867 1 0 864 1 10 507 4 0 27 0 1 269 10 535 90 chain 5238 chrX 155270560 + 65872500 65872627 MER2 342 + 136 260 192630 36 21 20 25 15 13 30 chain 16219 chrX 155270560 + 65889525 65889728 L1PA8A 6298 - 17 221 137699 90 0 1 113 chain 539328 chrX 155270560 + 65906835 65912971 L1PA3long 6157 - 0 6151 2923 455 0 2 310 1 0 1095 0 2 331 0 2 335 0 10 112 4 0 154 0 2 176 1 0 842 0 1 435 0 1 1446 5 6 434 chain 12239 chrX 155270560 + 65919065 65919337 L1PB1 5432 - 16 264 151256 12 1 0 13 1 0 21 1 0 24 2 0 14 56 40 12 4 3 40 8 7 11 1 0 51 chain 20574 chrX 155270560 + 65919379 65919648 L1PA8 5853 + 5590 5853 125380 19 2 0 73 1 0 6 1 0 52 2 1 19 1 0 93 chain 35763 chrX 155270560 + 65920979 65921462 L1PB 1623 + 995 1482 75184 60 0 1 234 0 7 11 15 13 125 1 0 7 6 5 24 chain 9554 chrX 155270560 + 65930107 65930240 L1P4 1494 - 148 284 162813 79 4 7 50 chain 197702 chrX 155270560 + 65933388 65935551 L1PA2 6032 - 2 2169 19378 988 0 3 131 0 1 1044 chain 9506 chrX 155270560 + 65935551 65935658 L1PA2 6032 + 3761 3868 162175 107 chain 436808 chrX 155270560 + 65938878 65944582 L1PA8 5853 + 109 5848 9137 192 10 14 290 1 0 4 1 0 5 0 1 8 12 13 232 0 1 249 47 38 630 8 27 530 0 1 82 25 25 110 0 1 211 2 0 6 0 1 153 0 12 93 1 0 888 1 5 468 0 1 319 16 15 239 11 15 22 3 1 6 0 1 23 0 1 99 3 0 202 0 1 139 4 13 66 1 0 48 2 0 58 1 0 7 7 6 59 2 1 19 1 0 88 chain 4553 chrX 155270560 + 65948575 65948647 Tigger3b 1229 - 1135 1201 200191 20 9 3 43 chain 56167 chrX 155270560 + 65949620 65950561 L1PA8 5853 - 0 896 55029 93 1 0 19 2 1 39 0 2 6 0 1 11 1 0 71 2 0 48 1 0 339 168 131 13 2 0 61 41 38 23 chain 12360 chrX 155270560 + 65950256 65950399 L1PA8 5853 + 4763 4906 150797 143 chain 250565 chrX 155270560 + 65960226 65963094 L1PA4 6152 - 9 2878 16208 325 1 2 425 0 1 4 1 0 618 6 4 135 1 0 273 0 2 4 0 1 1075 chain 29672 chrX 155270560 + 65967205 65967515 AluYa5 310 - 0 310 85932 310 chain 87099 chrX 155270560 + 65967822 65969019 L1PBa1 4058 - 26 1564 40739 34 1 0 17 5 316 60 0 4 43 1 2 7 0 2 112 1 0 216 0 1 22 0 1 189 1 4 110 0 5 124 10 12 40 1 0 69 0 14 134 chain 70627 chrX 155270560 + 65973735 65974992 L1PB1 5432 - 14 1131 48098 14 1 0 8 7 6 20 2 1 9 16 14 15 7 4 16 10 1 14 3 0 16 1 0 44 18 16 12 3 2 40 2 0 7 2 0 3 2 0 9 5 4 29 1 0 11 95 0 284 33 32 110 0 3 42 4 0 81 10 0 24 1 0 226 chain 3821 chrX 155270560 + 65975320 65975367 L1MB8 1703 - 674 721 210071 47 chain 441200 chrX 155270560 + 65980895 65986789 L1PA8 5853 - 2 5803 9019 91 1 0 19 3 2 45 1 0 12 1 0 61 13 11 44 0 6 6 7 0 221 0 1 55 0 3 75 0 1 189 2 0 75 12 13 52 0 3 78 5 7 68 34 0 208 1 0 285 9 5 378 0 1 352 0 1 261 14 1 194 0 1 23 1 2 113 0 1 51 13 12 195 12 12 599 0 1 137 0 1 478 0 1 578 1 0 4 14 10 72 5 1 132 0 4 168 10 1 122 18 6 178 50 29 13 1 0 11 2 0 21 chain 12626 chrX 155270560 + 66002979 66003135 L1PA7 6471 + 4799 4955 149744 156 chain 14635 chrX 155270560 + 66003140 66003317 L1PA7 6471 + 4957 5133 142474 22 1 0 154 chain 96498 chrX 155270560 + 66003317 66004447 L1PA7 6471 + 5134 6267 37688 197 0 1 67 1 2 66 0 1 153 1 0 18 0 1 627 chain 518814 chrX 155270560 + 66008888 66015002 L1PA5 6144 - 2 6141 5292 186 0 1 69 0 1 743 0 4 1162 5 0 303 0 2 385 0 1 221 0 2 539 0 1 784 0 4 1579 6 20 132 chain 190236 chrX 155270560 + 66022435 66024876 L1PA7 6471 + 4010 6463 20023 390 0 1 24 0 3 454 1 0 5 1 2 345 2 0 129 0 1 257 11 10 72 0 1 240 0 1 325 30 34 11 0 1 73 1 2 45 0 2 25 chain 28056 chrX 155270560 + 66029280 66029589 L1PA3long 6157 + 5846 6155 92806 309 chain 84563 chrX 155270560 + 66047400 66048482 MER11B 1079 - 5 1079 41698 24 2 1 172 0 1 101 3 5 29 10 0 194 6 5 4 0 1 537 chain 286156 chrX 155270560 + 66060013 66063808 L1PA3long 6157 + 2183 6157 14276 109 50 22 8 0 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548607 chrX 155270560 + 67436757 67442781 L1PA2 6032 + 1 6031 1624 254 2 1 3973 0 4 535 1 2 928 0 1 245 4 5 82 chain 527715 chrX 155270560 + 67444598 67450766 L1PA5 6144 + 0 6144 4429 120 0 14 1035 9 0 1034 26 0 502 1 2 233 0 1 210 1 0 13 3 1 222 0 1 294 3 0 2462 chain 31861 chrX 155270560 + 67478110 67478485 L1PA4 6152 - 18 379 81079 133 14 0 228 chain 21002 chrX 155270560 + 67482344 67482624 AluSp 311 + 1 277 123903 130 15 11 135 chain 529903 chrX 155270560 + 67484393 67490595 L1PA5 6144 + 3 6143 4199 446 6 4 397 5 6 1285 0 1 979 7 3 49 1 0 292 0 1 78 58 0 59 0 1 737 0 4 1790 5 0 8 chain 2570 chrX 155270560 + 67504172 67504204 MSTB1 431 + 29 60 232230 5 1 0 26 chain 45809 chrX 155270560 + 67532984 67533840 L1MA3 4352 + 3551 4352 62220 49 0 1 4 1 0 181 11 40 50 57 7 6 2 0 43 1 0 16 0 3 142 74 50 73 46 43 25 1 0 4 1 0 29 1 0 11 1 0 3 3 0 21 chain 169692 chrX 155270560 + 67545740 67547636 SVA_E 1901 + 5 1901 22092 148 1 0 585 0 1 23 0 1 54 1 0 16 1 0 18 5 6 17 0 1 12 1 2 38 3 0 31 2 1 181 5 6 99 0 1 655 chain 83275 chrX 155270560 + 67568926 67569918 L1PA7 6471 + 5489 6470 42216 134 3 0 508 1 0 327 4 0 7 3 0 5 chain 6818 chrX 155270560 + 67576678 67576793 L1MB8 1703 + 1464 1579 178810 44 1 0 4 11 12 55 chain 52942 chrX 155270560 + 67577104 67577683 L1PA4 6152 - 9 588 57054 579 chain 7111 chrX 155270560 + 67579803 67579936 MIR 256 + 87 219 176671 50 33 32 50 chain 9333 chrX 155270560 + 67580916 67581027 HY1 111 + 0 111 163886 111 chain 24821 chrX 155270560 + 67593921 67594212 AluSc 308 + 4 295 105761 291 chain 306587 chrX 155270560 + 67597275 67600702 L1PA3long 6157 - 0 3432 13150 144 1 2 873 1 0 780 0 4 584 0 3 289 2 0 753 chain 5714 chrX 155270560 + 67630865 67630931 LTR49 580 - 45 112 187980 50 0 1 16 chain 34334 chrX 155270560 + 67658749 67659256 MER51A 677 + 0 661 77159 176 31 113 12 1 73 137 32 32 118 chain 9060 chrX 155270560 + 67664338 67664442 L1PA4 6152 - 9 113 165258 104 chain 6434 chrX 155270560 + 67674122 67674204 HY4 93 + 11 93 181744 82 chain 10468 chrX 155270560 + 67677440 67677564 L1PA5 6144 + 5877 6001 158396 124 chain 12231 chrX 155270560 + 67677564 67677704 L1PA5 6144 + 6002 6142 151294 140 chain 27377 chrX 155270560 + 67680995 67681426 MER51B 395 - 16 395 95033 41 4 7 75 5 6 79 63 7 164 chain 22200 chrX 155270560 + 67697747 67697991 L1PA5 6144 + 5888 6132 119353 244 chain 60769 chrX 155270560 + 67698664 67699362 SVA_A 1864 + 1164 1864 52441 113 9 7 149 0 4 427 chain 66921 chrX 155270560 + 67705904 67706633 L1PA3long 6157 - 15 744 49676 729 chain 50307 chrX 155270560 + 67713554 67714131 L1PA5 6144 + 5547 6125 58786 134 3 4 440 chain 29221 chrX 155270560 + 67734886 67735195 AluYk12 309 + 0 309 87952 309 chain 533396 chrX 155270560 + 67744374 67750767 L1PA7 6471 - 10 6471 3791 146 8 7 140 1 11 169 1 26 339 1 4 947 0 4 219 3 11 557 0 1 332 0 4 15 2 0 7 0 1 420 23 0 120 9 21 319 0 2 512 0 4 105 2 3 411 0 3 132 0 3 203 0 1 318 14 24 39 0 1 467 0 1 412 chain 4538 chrX 155270560 + 67759325 67759380 U6 107 - 41 96 200352 55 chain 28915 chrX 155270560 + 67761132 67761559 LTR12F 595 - 0 595 89395 227 16 84 41 15 140 19 25 0 84 chain 17139 chrX 155270560 + 67765655 67765907 LTR39 781 - 503 771 135208 115 0 13 95 15 16 11 2 4 14 chain 4348 chrX 155270560 + 67766561 67766607 L1PA5 6144 + 5845 5891 202611 46 chain 22477 chrX 155270560 + 67766608 67766856 L1PA5 6144 + 5891 6139 118125 248 chain 25073 chrX 155270560 + 67772991 67773268 L1PA4 6152 + 5866 6143 104443 277 chain 420665 chrX 155270560 + 67779628 67784598 L1PA6 6164 - 2 4959 9521 152 1 0 154 6 12 659 12 13 523 1 0 78 5 4 128 0 1 135 0 2 1111 5 6 574 0 2 274 11 0 47 0 1 4 1 0 16 12 1 417 0 1 609 2 0 33 chain 51355 chrX 155270560 + 67784604 67785613 MER4E1 777 + 47 769 58058 138 0 15 21 0 13 37 0 2 197 0 1 70 2 9 27 327 0 175 0 2 15 chain 55941 chrX 155270560 + 67786212 67788924 L1PB1 5432 - 329 1149 55160 37 37 37 117 0 1 58 9 1 145 0 2 84 25 22 53 1 0 64 1 0 107 1882 0 92 chain 53376 chrX 155270560 + 67787332 67788010 THE1B-int 1605 - 899 1605 56786 104 0 1 120 5 6 19 1 26 254 0 1 175 chain 30951 chrX 155270560 + 67788295 67788745 MLT2A1 477 + 0 469 82600 142 0 1 19 8 12 68 3 1 141 30 0 10 10 56 19 chain 5805 chrX 155270560 + 67788750 67788832 THE1B 368 - 287 368 187093 52 7 6 23 chain 303212 chrX 155270560 + 67796137 67799538 L1PA4 6152 - 23 3421 13274 231 1 0 596 0 4 320 1 0 1645 4 0 156 1 0 446 chain 20172 chrX 155270560 + 67805579 67805948 MSTA 426 - 22 426 126608 79 18 26 47 20 0 10 21 46 54 24 46 96 chain 127252 chrX 155270560 + 67813465 67815245 L1MA2 4263 + 766 2560 28753 29 7 11 82 6 8 55 1 2 84 7 8 65 0 2 208 0 3 154 1 2 39 1 2 429 0 4 16 9 8 219 0 1 100 17 10 119 5 0 6 5 10 39 0 2 77 chain 530921 chrX 155270560 + 67822116 67828236 L1PA4 6152 + 1 6140 4089 127 0 14 2257 0 1 29 0 3 1508 0 1 404 9 13 26 58 4 1424 0 1 193 0 49 85 chain 4441 chrX 155270560 + 67830433 67830483 L1MB7 1623 + 263 313 201436 50 chain 50645 chrX 155270560 + 67834428 67835017 L1PA7 6471 - 3 585 58541 326 8 0 211 0 1 44 chain 34482 chrX 155270560 + 67835017 67835418 L1PA7 6471 + 5476 5880 76939 138 0 4 92 1 0 170 chain 16510 chrX 155270560 + 67836698 67836916 MER30 238 - 10 233 136888 112 4 9 102 chain 42884 chrX 155270560 + 67848703 67849245 MLT2A2 560 + 4 560 65552 136 0 1 256 7 19 74 0 1 69 chain 67802 chrX 155270560 + 67876054 67876841 L1PA5 6144 + 5338 6126 49321 148 3 6 175 1 0 113 2 0 211 1 2 133 chain 21004 chrX 155270560 + 67881871 67882122 AluSp 311 - 34 283 123895 145 2 0 104 chain 6617 chrX 155270560 + 67930226 67930367 MER5A1 166 - 5 166 180325 19 31 51 6 1 0 55 6 7 23 chain 71530 chrX 155270560 + 67948486 67949532 L1MA2 4263 + 3071 4102 47682 144 1 4 170 14 1 184 8 13 75 1 0 80 5 9 58 9 7 4 1 0 129 40 38 71 7 0 17 1 0 27 chain 15383 chrX 155270560 + 67954906 67956064 L1PB3 3668 + 1833 3007 35799 252 40 58 16 0 3 127 0 4 17 5 0 8 5 1 349 1 0 52 0 2 127 7 8 130 2 0 20 chain 557290 chrX 155270560 + 67956092 67962238 L1PA3long 6157 + 6 6157 580 6002 0 5 144 chain 5725 chrX 155270560 + 67962282 67962713 L1PB3 3668 + 3044 3474 35799 40 17 18 87 0 1 101 1 0 100 1 0 78 1 0 5 chain 330239 chrX 155270560 + 67996041 68000000 L1P2 5180 + 2 4475 12195 86 0 507 191 1 16 559 0 1 959 23 5 92 0 1 671 0 6 87 0 1 818 1 0 233 0 2 238 chain 140501 chrX 155270560 + 68000000 68001664 L1PA6 6164 + 4483 6152 26072 182 4 5 642 0 4 836 chain 13870 chrX 155270560 + 68002803 68002972 L1P2 5180 - 2 168 145007 4 1 0 39 1 0 45 1 0 78 chain 59693 chrX 155270560 + 68006276 68006953 L1PA5 6144 + 5467 6142 52995 249 0 2 417 4 0 7 chain 19126 chrX 155270560 + 68011269 68011473 L1PA2 6032 - 282 486 129751 204 chain 7806 chrX 155270560 + 68011519 68011604 L1PA3long 6157 + 6058 6143 172276 85 chain 24275 chrX 155270560 + 68017416 68017771 THE1A 353 + 0 353 108810 13 2 0 34 0 1 48 32 31 226 chain 97640 chrX 155270560 + 68017771 68019024 THE1A-int 1579 + 0 1574 37387 130 0 2 412 13 11 232 0 7 6 7 1 27 0 1 38 0 3 118 0 1 58 0 315 212 chain 3877 chrX 155270560 + 68030277 68030325 ERVL-int 1947 + 1812 1860 209206 48 chain 330012 chrX 155270560 + 68034185 68038579 L1PB1 5432 + 1085 5422 12202 349 2 3 1332 9 14 37 2 0 5 0 1 15 2 1 755 4 5 125 9 12 189 0 1 184 0 1 513 2 0 135 7 2 339 1 2 9 29 0 22 1 0 6 3 2 14 5 1 9 3 1 51 2 1 16 1 0 42 0 3 10 70 54 24 1 0 8 20 13 13 1 0 18 chain 6857 chrX 155270560 + 68079885 68080007 MER5A 189 + 27 151 178526 60 30 32 32 chain 112140 chrX 155270560 + 68171822 68173245 LTR12C 1709 + 0 1709 33627 48 0 1 223 11 14 13 1 2 33 23 66 63 0 1 4 1 0 281 9 46 23 0 159 94 0 47 106 11 4 32 0 2 447 chain 171484 chrX 155270560 + 68272943 68274887 L1PA6 6164 + 4217 6160 21888 1519 1 0 424 chain 4099 chrX 155270560 + 68275774 68275883 L1MC4a 1092 + 27 122 205974 18 1 0 11 17 17 12 19 6 31 chain 81048 chrX 155270560 + 68276524 68277410 L1PA3long 6157 - 874 1762 43166 488 0 2 398 chain 78764 chrX 155270560 + 68277410 68278283 L1PA3long 6157 + 5287 6157 44039 865 3 0 5 chain 22756 chrX 155270560 + 68347862 68348154 MER47A 366 + 35 330 116800 76 0 2 6 0 1 210 chain 5321 chrX 155270560 + 68389225 68389295 MLT1F2 592 - 406 483 191819 6 0 7 64 chain 4182 chrX 155270560 + 68391628 68391680 L1MCa 1829 - 317 368 204795 28 1 0 23 chain 99732 chrX 155270560 + 68463598 68464757 L1PA7 6471 - 547 1719 36847 303 1 0 147 0 5 22 0 1 156 0 7 80 1 0 154 0 1 33 0 1 262 chain 47697 chrX 155270560 + 68464757 68465309 L1PA7 6471 + 5916 6468 60699 552 chain 428743 chrX 155270560 + 68465453 68471056 L1PA7 6471 + 3 6464 9337 149 20 19 110 2 1 125 1 2 50 1 0 777 0 1 744 6 1186 330 1 0 89 324 8 63 6 0 75 0 6 338 0 1 166 22 24 411 1 3 939 7 0 46 0 1 473 1 0 319 2 0 5 chain 16644 chrX 155270560 + 68490731 68491085 L1PB1 5432 - 5 402 136542 5 2 0 18 1 0 13 1 0 21 1 0 15 26 23 5 2 0 18 9 0 9 2 0 4 1 0 10 11 9 41 1 0 15 2 1 53 20 89 48 chain 33505 chrX 155270560 + 68524627 68525037 L1PA6 6164 + 5761 6162 78403 358 7 0 35 2 0 8 chain 2888 chrX 155270560 + 68532797 68532837 MER53 195 - 15 54 227230 15 1 0 24 chain 20120 chrX 155270560 + 68547741 68548088 THE1D 372 + 0 372 126771 56 0 26 16 1 0 47 0 8 7 76 68 144 chain 255477 chrX 155270560 + 68558607 68561441 L1PA4 6152 - 1 2838 15960 2210 0 1 304 2 4 318 chain 535841 chrX 155270560 + 68570607 68576740 L1PA5 6144 + 0 6141 3468 120 1 15 8 14 0 1076 0 1 1941 1 4 1176 0 4 948 2 1 40 4 9 792 4 0 6 chain 17818 chrX 155270560 + 68589713 68589938 MER30 238 + 0 238 133338 107 4 17 114 chain 3431 chrX 155270560 + 68590621 68590660 MLT2F 649 + 593 632 216551 39 chain 19086 chrX 155270560 + 68597247 68597646 MLT1A1 405 - 17 403 129860 67 3 0 25 13 23 57 49 58 13 23 0 10 7 0 93 16 17 23 chain 91529 chrX 155270560 + 68636452 68637897 LTR12C 1709 + 0 1709 39121 14 0 1 114 6 8 71 6 26 26 7 8 23 4 5 40 0 43 84 25 0 7 64 45 51 7 13 71 0 119 68 1 0 234 0 47 95 46 15 235 62 31 40 0 131 44 chain 132145 chrX 155270560 + 68641207 68642840 SVA_B 1603 + 7 1603 27606 15 11 2 18 15 8 146 1 0 466 1 0 184 0 1 4 3 1 12 1 0 15 4 0 41 4 0 43 4 0 13 1 0 10 21 16 330 0 1 270 chain 228521 chrX 155270560 + 68653585 68656160 L1PA5 6144 - 16 2596 17388 131 0 1 56 0 2 916 2 0 25 0 1 545 1 2 407 1 2 108 1 2 382 chain 237413 chrX 155270560 + 68657393 68661430 L1PA14 3548 - 83 3458 16915 10 6 0 40 1 0 19 1 0 3 1 0 15 4 2 35 23 18 71 1 2 28 3 2 83 1 0 6 2 0 13 5 3 5 2 0 105 2 0 7 13 11 34 19 15 102 0 1 12 0 4 118 13 14 87 0 1 63 1 0 254 13 1 168 9 15 42 0 1 86 1 0 334 0 1 4 2 1 6 0 3 38 623 0 53 1 0 53 9 8 160 0 4 126 2 4 236 5 6 136 1 2 4 1 0 303 5 0 34 1 0 40 0 1 113 11 9 22 10 8 22 2 1 19 2 1 69 4 0 6 2 1 51 chain 543204 chrX 155270560 + 68668214 68674230 L1PA2 6032 + 1 6027 2311 709 0 7 1480 0 1 1182 0 1 815 0 1 1830 chain 487143 chrX 155270560 + 68678395 68683882 L1PA3long 6157 - 11 6157 7475 750 0 1 227 0 1 178 0 1 613 2 0 15 1 0 966 0 4 1070 0 1 1415 0 128 156 0 2 5 0 524 89 chain 192343 chrX 155270560 + 68701942 68704884 L1PA4 6152 - 1 2218 19830 85 5 0 719 727 0 46 1 0 552 0 8 807 chain 62286 chrX 155270560 + 68702764 68703451 L1PA3long 6157 + 5455 6142 51759 687 chain 13644 chrX 155270560 + 68704887 68705067 L1P3 4156 + 3962 4136 145796 44 3 0 101 2 0 7 2 1 21 chain 2909 chrX 155270560 + 68753359 68753407 MER52C 1267 - 254 311 226896 21 5 14 22 chain 18185 chrX 155270560 + 68794105 68794459 THE1A 353 - 0 353 132373 76 40 40 16 17 15 8 0 2 49 46 45 102 chain 124360 chrX 155270560 + 68794459 68796037 THE1A-int 1579 - 0 1579 29581 11 0 1 5 1 0 566 0 2 56 12 11 270 0 2 4 0 1 12 2 3 625 4 0 10 chain 25292 chrX 155270560 + 68796037 68796375 THE1A 353 - 0 353 103261 95 1 0 16 13 30 102 1 0 110 chain 18821 chrX 155270560 + 68800652 68800872 L1PA7 6471 + 6242 6462 130604 220 chain 27371 chrX 155270560 + 68805851 68806140 AluYd8 298 + 0 289 95046 289 chain 3034 chrX 155270560 + 68816643 68816681 MLT1A1 405 - 11 49 224320 38 chain 267241 chrX 155270560 + 68863891 68867724 L1PA10 4194 - 44 3795 15329 33 4 1 34 4 0 374 8 0 95 0 1 403 0 15 58 1 0 178 2 0 5 20 24 87 2 1 94 30 125 91 184 0 301 0 4 101 0 2 31 0 4 345 0 1 74 6 5 38 2 0 36 22 9 108 0 1 76 18 21 335 11 11 66 4 8 62 0 1 4 0 1 359 0 3 40 2 0 85 chain 68372 chrX 155270560 + 68872695 68873456 L1PA4 6152 - 1374 2138 49010 154 0 1 267 0 2 340 chain 122573 chrX 155270560 + 68873456 68874798 L1PA4 6152 + 4802 6148 30199 480 0 4 862 chain 131514 chrX 155270560 + 68880188 68881658 L1PA5 6144 - 1 1467 27744 510 4 0 956 chain 10921 chrX 155270560 + 68892322 68892443 5S 121 + 0 121 156521 121 chain 539923 chrX 155270560 + 68896677 68902690 L1PA3long 6157 - 0 6157 2826 11 1 4 751 0 1 76 0 4 140 0 3 1025 1 0 42 0 2 580 1 3 2611 0 128 34 0 1 584 4 5 152 chain 9168 chrX 155270560 + 68907242 68907354 L1MB7 1623 - 1316 1428 164712 112 chain 2984 chrX 155270560 + 68907509 68907541 L1MB7 1623 - 831 863 225356 32 chain 3735 chrX 155270560 + 68913006 68913053 MER57C2 434 - 24 71 211395 47 chain 196822 chrX 155270560 + 68919506 68922846 HERVH48-int 3304 - 59 3116 19439 26 88 67 27 38 5 37 58 44 68 2 0 3 1 0 45 1 0 5 2 0 22 1 0 10 13 5 22 13 9 8 3 0 27 147 114 17 1 0 3 1 0 29 2 1 13 4 2 44 1 0 19 1 0 3 1 0 229 5 4 21 6 0 15 8 7 13 1 0 69 4 0 18 2 1 245 2 1 17 2 0 271 1 0 64 0 1 23 2 1 19 0 2 39 0 2 110 1 14 32 1 0 8 1 0 12 1 0 122 24 15 16 1 0 25 2 0 22 1 0 15 1 0 5 2 0 21 2 0 3 3 0 34 2 0 12 0 3 17 1 0 11 1 0 118 25 17 70 1 0 27 1 0 11 1 0 34 2 0 63 6 4 4 1 0 16 4 0 18 1 0 3 8 0 28 60 0 28 10 11 8 1 0 4 0 11 66 12 6 10 6 0 13 1 0 73 1 0 5 6 2 43 0 1 21 1 0 4 11 6 9 1 0 21 22 9 21 9 0 27 2 0 11 chain 29407 chrX 155270560 + 68923287 68923674 MER48 407 - 0 407 87033 236 1 0 19 0 20 96 1 0 5 3 5 26 chain 131332 chrX 155270560 + 68930637 68932111 L1P1 4361 - 20 1490 27792 12 2 1 23 1 0 154 1 0 980 1 0 300 chain 74328 chrX 155270560 + 68932216 68933054 L1PA4 6152 + 5302 6139 46347 516 1 0 80 1 0 109 1 2 130 chain 67423 chrX 155270560 + 68936156 68937125 L1PREC2 3366 - 403 1348 49476 6 2 0 6 3 0 22 10 8 11 10 5 16 50 39 44 1 0 22 8 5 25 1 0 4 7 6 212 0 5 509 chain 152965 chrX 155270560 + 68951952 68953705 L1PA5 6144 - 7 1759 24237 11 1 0 120 15 15 231 0 1 895 1 0 479 chain 57612 chrX 155270560 + 68968784 68969404 L1PA2 6032 - 3 623 54178 620 chain 518641 chrX 155270560 + 68969875 68976024 L1PA5 6144 - 12 6144 5317 126 21 16 696 1 0 342 0 1 87 1 0 205 1 0 325 55 5 821 1 2 936 0 3 259 0 3 123 0 2 247 0 4 40 0 1 241 0 3 193 1 5 32 1 6 237 9 0 309 2 0 589 1 0 105 7 33 135 chain 16857 chrX 155270560 + 68992492 68992717 L1PA16 3655 - 72 294 135951 5 3 0 217 chain 544558 chrX 155270560 + 69003138 69009161 L1PA3long 6157 - 5 6157 2133 421 4 0 340 0 1 2111 5 8 2368 0 128 621 0 1 153 chain 6802 chrX 155270560 + 69010066 69010143 L1PA4 6152 - 6 83 178936 77 chain 56916 chrX 155270560 + 69012188 69012997 L1PB2 3958 - 120 913 54583 63 1 0 22 2 0 72 1 0 58 6 5 27 5 3 135 6 1 13 2 0 65 5 0 13 1 0 18 0 2 34 2 0 25 5 9 228 chain 7526 chrX 155270560 + 69019637 69019736 L1MA4A 3247 + 3011 3104 174004 27 6 0 66 chain 3431 chrX 155270560 + 69023390 69023429 HSMAR1 1287 - 1238 1277 216554 39 chain 338481 chrX 155270560 + 69036019 69040663 L1PA11 4918 + 8 4578 11943 7 1 0 27 2 0 42 4 1 30 0 2 10 2 0 18 1 0 36 1 0 32 2 0 5 2 1 128 10 8 143 1 0 70 9 0 137 5 0 19 0 1 111 2 1 15 0 1 22 10 0 7 0 5 521 3 1 9 0 4 47 28 24 132 8 7 16 2 1 163 1 2 381 2 1 5 0 1 58 3 7 448 2 0 193 4 5 279 9 2 298 1 0 95 7 6 75 0 2 7 2 0 19 18 3 632 1 0 45 1 2 15 2 1 18 3 4 58 2 0 14 1 0 15 58 46 5 1 0 13 2 0 11 chain 543412 chrX 155270560 + 69042544 69048570 L1PA3long 6157 - 1 6157 2277 153 0 1 2057 0 1 3041 0 128 775 chain 448964 chrX 155270560 + 69050919 69056710 L1PA6 6164 - 8 6164 8788 144 14 22 30 3 0 5 0 3 120 1 0 293 0 2 31 0 14 75 0 1 91 6 10 434 2 3 229 2 0 67 0 1 5 2 1 680 9 4 10 1 8 179 5 0 260 376 692 25 3 28 355 8 0 562 0 1 229 1 2 392 0 2 245 0 1 333 1 0 47 0 2 280 0 2 236 chain 28331 chrX 155270560 + 69053661 69053981 L1PA5 6144 - 13 333 91833 320 chain 28811 chrX 155270560 + 69062466 69062879 MSTA 426 + 0 414 89834 143 21 27 35 4 1 32 6 4 172 chain 222748 chrX 155270560 + 69075556 69080701 L1PA13 3608 - 144 3354 17724 16 18 14 32 28 25 21 1 0 20 1 0 10 1918 4 47 3 1 53 4 6 55 1 0 326 2 4 67 1 4 71 0 2 5 6 0 268 6 5 61 0 3 8 4 1 397 1 0 4 17 18 83 24 25 23 0 3 215 1 7 36 11 10 196 0 2 209 6 1 475 2 0 99 1 0 6 36 32 30 7 3 16 2 0 17 1 0 15 16 15 107 1 0 3 1 0 34 chain 107332 chrX 155270560 + 69075750 69077350 L1PB1 5432 - 10 1606 34884 18 1 0 11 1 0 23 1 0 24 2 0 14 8 5 19 14 5 7 3 0 16 1 0 9 0 2 32 1 0 16 2 1 51 3 1 9 2 0 3 2 0 12 1 0 6 1 0 24 43 73 31 10 8 288 0 1 95 7 0 313 7 5 220 7 12 242 chain 2930 chrX 155270560 + 69077541 69077599 L1PA13 3608 - 212 265 226506 5 1 0 23 9 5 20 chain 28247 chrX 155270560 + 69085172 69085525 MLT2A1 477 - 119 477 92128 185 1 5 25 0 1 142 chain 469102 chrX 155270560 + 69085525 69091121 HERVL-int 5654 - 0 5654 8069 71 1 4 92 0 3 53 0 1 915 5 1 712 0 1 16 6 9 85 0 1 47 0 1 303 4 14 10 6 4 697 0 1 600 0 18 263 4 20 973 0 4 171 2 1 221 0 3 339 chain 311793 chrX 155270560 + 69091575 69096108 L1PB1 5432 + 797 5103 12932 34 8 9 547 29 35 178 0 1 113 5 7 9 1 0 213 11 12 116 12 15 338 1 7 6 6 0 51 4 0 89 0 5 148 9 75 31 22 20 151 0 1 4 1 0 28 0 6 116 320 0 337 15 23 207 0 3 181 0 5 387 1 0 31 2 0 75 5 3 65 0 1 150 5 0 57 8 6 20 0 1 44 0 3 342 chain 69285 chrX 155270560 + 69109936 69110882 L1PA11 4918 + 3399 4331 48691 291 5 0 50 44 25 285 3 4 42 6 14 25 0 1 195 chain 5209 chrX 155270560 + 69110882 69110942 L1PA11 4918 + 4333 4393 192926 60 chain 8767 chrX 155270560 + 69110958 69111134 L1PA11 4918 + 4407 4567 166834 67 2 0 14 1 0 19 21 13 13 10 6 15 1 0 13 chain 4106 chrX 155270560 + 69130357 69130663 L1MEf 1413 - 744 1055 205831 18 72 71 30 67 69 18 71 76 23 1 0 6 chain 374977 chrX 155270560 + 69143026 69147604 L1PA8A 6298 - 10 4566 10922 229 0 1 195 35 0 13 0 2 347 1 0 10 0 3 15 1 5 399 24 24 395 4 0 107 0 1 187 0 1 419 2 1 56 1 2 84 0 3 84 8 0 104 2 0 134 7 10 40 0 4 47 3 0 592 0 1 154 1 4 112 0 2 356 6 7 107 0 2 297 chain 115214 chrX 155270560 + 69169699 69170950 L1PA3long 6157 + 4904 6156 32709 47 0 1 1204 chain 11242 chrX 155270560 + 69171077 69171255 MLT1A1 405 + 186 355 155256 9 7 0 75 12 11 54 1 0 20 chain 116144 chrX 155270560 + 69202489 69203728 L1HS 6032 - 3387 4626 32327 1239 chain 316591 chrX 155270560 + 69203728 69207137 L1PA2 6032 + 2623 6032 12737 3409 chain 118915 chrX 155270560 + 69216889 69218438 THE1A-int 1579 + 0 1554 31449 302 5 6 155 0 3 262 68 6 9 0 62 414 0 6 150 9 4 175 chain 17560 chrX 155270560 + 69230492 69230854 THE1B 368 - 0 368 134100 56 10 10 62 61 66 51 36 38 60 2 1 24 chain 14738 chrX 155270560 + 69259511 69259700 MER30 238 - 3 199 142146 42 0 3 74 5 9 68 chain 50377 chrX 155270560 + 69292566 69293826 PABL_A 660 + 0 660 58728 60 1 0 10 0 5 6 0 9 72 331 17 24 4 3 223 298 0 231 chain 47229 chrX 155270560 + 69297292 69297877 LTR10C 591 - 7 591 61022 74 0 2 248 7 6 220 2 0 34 chain 12627 chrX 155270560 + 69318793 69319220 L1MD2 1676 + 1240 1654 149739 31 36 37 15 1 0 106 196 183 42 chain 55572 chrX 155270560 + 69319358 69319974 L1P1 4361 + 2851 3467 55372 616 chain 378800 chrX 155270560 + 69319979 69324105 L1PA3long 6157 + 2030 6157 10797 3276 0 1 850 chain 5095 chrX 155270560 + 69336717 69336778 LTR51 675 + 0 61 194130 61 chain 28076 chrX 155270560 + 69338890 69339276 LTR26 622 - 0 412 92731 49 0 1 144 1 0 85 19 45 88 chain 35094 chrX 155270560 + 69341347 69341830 MLT2A1 477 - 0 477 76057 8 0 4 43 6 0 8 7 4 210 0 1 19 1 2 9 5 2 167 chain 126969 chrX 155270560 + 69342263 69343752 SVA_B 1603 + 7 1603 28822 15 36 20 590 1 3 181 0 40 8 0 42 29 0 41 621 2 0 6 chain 39298 chrX 155270560 + 69343764 69344259 LTR19A 502 - 11 502 70332 32 0 1 145 0 1 42 13 8 69 1 0 193 chain 13593 chrX 155270560 + 69348947 69349159 LTR26 622 - 416 622 146003 112 30 23 13 0 1 57 chain 8533 chrX 155270560 + 69356152 69356302 Tigger5 388 + 164 312 168120 71 1 0 26 13 10 19 7 9 13 chain 25773 chrX 155270560 + 69368800 69369095 AluSp 311 + 4 299 100999 295 chain 3231 chrX 155270560 + 69379510 69379667 L1M2a 2583 - 1274 1464 220392 25 65 0 11 9 122 10 15 0 22 chain 8440 chrX 155270560 + 69381231 69381344 L1MC3 1789 + 1094 1208 168619 31 1 2 81 chain 35696 chrX 155270560 + 69429819 69430247 THE1C-int 1605 + 0 429 75277 14 2 1 221 0 2 191 chain 549165 chrX 155270560 + 69430254 69436385 L1PA4 6152 - 0 6146 1559 259 0 1 597 0 1 504 1 3 1534 0 3 85 1 0 68 0 2 1043 0 4 290 0 1 981 0 2 768 chain 6723 chrX 155270560 + 69437797 69437870 THE1C-int 1605 + 1525 1598 179521 73 chain 25436 chrX 155270560 + 69437879 69438573 THE1C 375 + 4 373 102521 65 341 15 91 0 1 9 13 14 150 1 0 24 chain 24539 chrX 155270560 + 69440639 69440935 AluSx4 309 + 11 308 107317 16 0 3 273 2 0 5 chain 12636 chrX 155270560 + 69464050 69464196 LTR8 732 + 586 732 149699 146 chain 19740 chrX 155270560 + 69466091 69466460 L1PA15 4387 + 3996 4352 127982 62 0 4 42 1 0 26 1 0 54 2 1 23 4 0 8 2 1 32 27 24 32 29 23 24 chain 2959 chrX 155270560 + 69481793 69481955 L2a 937 - 661 818 225900 7 5 0 18 19 18 18 74 75 21 chain 55670 chrX 155270560 + 69523791 69524396 L1PA3long 6157 - 0 605 55328 605 chain 6337 chrX 155270560 + 69524396 69524497 L1MB8 1703 - 158 268 182491 48 9 18 44 chain 6884 chrX 155270560 + 69527051 69527133 L1MB7 1623 - 1444 1526 178323 82 chain 158464 chrX 155270560 + 69568202 69570326 SVA_A 1864 - 0 1836 23535 720 1 0 46 39 0 59 40 0 14 76 0 139 1 0 16 3 0 107 1 0 38 43 0 38 3 0 50 40 0 23 43 0 35 4 3 37 0 3 508 chain 2716 chrX 155270560 + 69568969 69569006 SVA_A 1864 - 877 914 58488 37 chain 2936 chrX 155270560 + 69569067 69569107 SVA_A 1864 - 1009 1046 58488 16 3 0 21 chain 5358 chrX 155270560 + 69569124 69569197 SVA_A 1864 - 1061 1136 58488 36 5 7 32 chain 3112 chrX 155270560 + 69569504 69569545 SVA_A 1864 - 1404 1445 66867 41 chain 2590 chrX 155270560 + 69569703 69569742 SVA_A 1864 - 1064 1102 142346 37 1 0 1 chain 23213 chrX 155270560 + 69576909 69577188 AluY 311 + 27 294 114625 105 0 1 154 13 0 7 chain 538479 chrX 155270560 + 69583100 69589247 L1PA4 6152 - 0 6152 3072 6 0 5 342 0 3 320 0 2 817 1 0 1376 5 0 104 1 0 292 4 0 46 0 4 1676 8 11 128 1 0 1020 chain 125219 chrX 155270560 + 69591097 69592548 SVA_D 2077 - 261 2077 29316 77 0 10 376 1 2 36 12 13 16 19 106 23 0 269 327 0 1 532 4 0 28 chain 4978 chrX 155270560 + 69592776 69592836 MER68 562 - 36 96 195383 60 chain 23813 chrX 155270560 + 69598721 69599041 AluY 311 + 0 311 111400 24 3 0 105 6 0 10 7 4 7 0 3 158 chain 3134 chrX 155270560 + 69602680 69602751 L1MB8 1703 + 833 901 222283 5 1 0 32 18 16 15 chain 22913 chrX 155270560 + 69602754 69603055 AluSp 311 + 2 301 116040 130 6 3 127 9 10 29 chain 7033 chrX 155270560 + 69616138 69616222 HY4 93 + 10 93 177231 61 1 0 22 chain 2816 chrX 155270560 + 69617330 69617385 MER4D 903 + 800 854 228512 25 11 9 14 0 1 5 chain 26193 chrX 155270560 + 69619516 69619807 L1PA3long 6157 + 5862 6157 99228 240 0 4 51 chain 37143 chrX 155270560 + 69619872 69620291 L1PA2 6032 - 1 419 73317 153 0 5 7 5 0 96 1 0 157 chain 23883 chrX 155270560 + 69620929 69621211 AluSc5 308 - 10 292 111005 282 chain 5489 chrX 155270560 + 69658163 69658223 MER44B 551 - 31 91 190142 60 chain 8610 chrX 155270560 + 69661265 69661377 L1MDa 1598 + 1146 1266 167669 91 0 8 21 chain 23854 chrX 155270560 + 69707509 69707792 AluSp 311 - 20 303 111157 159 0 1 6 1 0 117 chain 506986 chrX 155270560 + 69734982 69741123 L1PA5 6144 - 12 6143 6397 132 7 5 1023 1 2 1458 4 5 303 0 2 6 19 15 22 0 1 577 0 3 146 0 4 47 0 4 754 9 7 447 32 23 203 26 1 337 0 5 345 4 5 36 1 0 48 4 1 16 0 14 134 chain 92855 chrX 155270560 + 69767260 69768278 L1PA4 6152 + 5132 6151 38699 644 0 1 374 chain 98007 chrX 155270560 + 69769898 69771395 L1MA3 4352 + 2878 4352 37278 6 0 5 143 30 28 327 2 0 191 7 4 323 0 1 67 17 12 57 13 11 23 38 29 7 0 7 14 9 10 36 1 0 16 0 1 9 0 2 53 2 0 22 8 6 29 1 0 4 20 9 22 chain 555445 chrX 155270560 + 69784256 69790403 L1PA3long 6157 - 0 6153 776 769 1 0 78 0 3 1250 0 1 3348 0 1 128 0 2 573 chain 92817 chrX 155270560 + 69791805 69792853 L1PA4 6152 + 5090 6143 38705 99 1 6 948 chain 28514 chrX 155270560 + 69803847 69804156 AluYb8 318 + 0 305 91121 126 4 0 179 chain 112463 chrX 155270560 + 69806602 69808112 THE1D-int 1627 + 0 1627 33548 77 2 1 23 3 6 234 5 107 273 47 58 406 11 8 126 0 4 294 0 1 9 chain 18825 chrX 155270560 + 69814471 69814806 THE1C 375 + 0 352 130592 138 3 7 21 71 84 102 chain 70976 chrX 155270560 + 69819372 69820168 L1PA3long 6157 - 0 797 47939 147 0 1 649 chain 167474 chrX 155270560 + 69820175 69822763 L1P1 4361 + 2439 4341 22340 1194 683 0 518 1 0 154 1 0 23 2 1 12 chain 60723 chrX 155270560 + 69821386 69822052 SVA_E 1901 - 0 919 52459 535 0 127 18 0 126 113 chain 31822 chrX 155270560 + 69836394 69837007 L1MA3 4352 + 3750 4347 81129 158 1 0 181 151 145 26 2 0 22 1 0 6 1 0 19 8 7 14 6 2 17 chain 21509 chrX 155270560 + 69856767 69857109 L1PA11 4918 + 4183 4517 122112 125 18 14 7 0 6 56 4 3 9 6 4 67 2 0 14 1 0 20 4 0 9 chain 541799 chrX 155270560 + 69858752 69864774 L1PA3long 6157 + 1 6149 2545 151 0 1 45 6 0 166 0 1 411 0 128 1303 0 2 3940 chain 57138 chrX 155270560 + 69867617 69868272 L1PA5 6144 + 5488 6144 54436 506 3 4 146 chain 8483 chrX 155270560 + 69875581 69875692 MLT1C 463 + 351 462 168392 111 chain 44968 chrX 155270560 + 69877442 69877930 L1PA3long 6157 + 5664 6152 63093 488 chain 156907 chrX 155270560 + 69880748 69882545 L1P1 4361 + 4 1810 23740 201 1 0 609 3 9 26 0 1 305 0 3 652 chain 146538 chrX 155270560 + 69898784 69900446 SVA_D 2077 + 1 2077 25084 58 0 2 43 0 27 497 0 39 21 0 40 33 3 0 134 0 83 41 0 1 16 0 2 51 1 0 131 1 225 632 chain 2897 chrX 155270560 + 69903680 69903718 L1M3 994 + 534 572 227078 38 chain 3325 chrX 155270560 + 69904006 69904060 L1M3 994 + 40 92 218476 21 1 0 14 1 0 17 chain 32970 chrX 155270560 + 69905523 69905952 L1PA8 5853 - 592 1029 79262 30 0 2 221 0 2 18 7 11 153 chain 43674 chrX 155270560 + 69905952 69906550 L1PA8 5853 + 5258 5853 64600 97 0 1 208 1 0 6 0 1 39 2 0 66 6 5 10 1 0 4 6 7 38 2 1 15 6 5 75 0 1 16 chain 3256 chrX 155270560 + 69918053 69918096 L1MA4 2864 - 74 115 219851 24 2 0 17 chain 52253 chrX 155270560 + 69924698 69925271 L1PA5 6144 - 1052 1625 57461 573 chain 92450 chrX 155270560 + 69925272 69926314 L1PA5 6144 + 5096 6140 38826 281 0 1 82 0 1 535 0 1 134 1 0 9 chain 64838 chrX 155270560 + 69927680 69928700 L1PA16 3655 + 2647 3619 50642 28 2 1 101 26 45 40 1 0 20 5 4 12 38 0 19 1 0 195 0 1 91 1 0 86 2 0 125 8 9 151 1 0 18 33 10 16 chain 542532 chrX 155270560 + 69930651 69936778 L1PA4 6152 - 12 6152 2416 4581 0 2 701 0 1 598 11 21 236 chain 92958 chrX 155270560 + 69939343 69940378 L1PA5 6144 + 5106 6143 38669 187 0 1 516 0 1 332 chain 537096 chrX 155270560 + 69948028 69954153 L1PA4 6152 + 1 6141 3301 854 0 1 305 0 3 699 0 1 195 1 7 1536 0 1 546 0 3 1220 2 0 95 0 1 507 0 1 165 chain 99965 chrX 155270560 + 69957745 69958967 L1PA8 5853 + 4639 5853 36786 86 0 1 283 2 0 75 0 2 478 1 0 46 2 0 62 1 0 6 2 1 8 2 1 52 3 1 19 1 0 93 chain 11570 chrX 155270560 + 69967618 69967749 L1PA5 6144 - 5 136 154020 131 chain 134611 chrX 155270560 + 69968301 69969772 L1PA2 6032 - 1032 2505 27093 82 0 1 1385 0 1 4 chain 92357 chrX 155270560 + 69969772 69970783 L1PA2 6032 + 5018 6031 38685 543 0 2 468 chain 17794 chrX 155270560 + 69970816 69971018 L1PA4 6152 + 5476 5678 133431 202 chain 41811 chrX 155270560 + 69971020 69971485 L1PA4 6152 + 5678 6143 66876 465 chain 429497 chrX 155270560 + 69976093 69981568 L1PA8 5853 + 284 5848 9319 17 3 7 126 0 21 77 0 1 88 14 18 104 1 0 4 0 1 204 3 4 4 1 0 461 3 2 596 2 0 461 1 5 63 0 1 98 0 1 81 0 2 5 6 4 179 0 2 179 0 1 99 2 0 336 0 5 728 0 1 259 0 5 134 0 7 7 8 1 321 7 5 554 1 0 45 2 0 69 0 34 25 10 26 71 5 4 11 chain 6504 chrX 155270560 + 69982152 69982237 L1MA2 4263 + 5 89 181206 17 4 3 64 chain 10704 chrX 155270560 + 69982911 69983085 L1PB2 3958 + 3661 3838 157395 20 1 0 41 22 28 25 1 0 7 1 0 56 chain 137793 chrX 155270560 + 69985265 69987678 L1MA2 4263 + 2044 4104 26517 16 0 4 175 1 0 194 1 0 4 7 11 85 0 1 109 1 0 6 1 0 109 348 0 358 1 0 16 6 12 52 0 8 4 1 0 178 7 8 123 144 145 115 13 0 34 3 0 147 1 0 6 2 1 73 0 1 10 2 0 5 8 3 47 chain 14083 chrX 155270560 + 69990284 69990439 L1PA2 6032 + 5877 6032 144280 155 chain 3875 chrX 155270560 + 69998209 69998258 MLT1A0 366 + 4 53 209239 49 chain 512438 chrX 155270560 + 70000187 70006331 L1PA6 6164 + 0 6162 5927 343 0 1 455 1 18 202 1 0 187 15 16 411 1 0 701 12 1 149 18 19 121 1 0 232 1 2 261 0 1 49 0 4 16 0 1 340 1 0 58 0 1 114 2 0 324 1 0 329 2 6 539 0 1 115 0 8 992 1 0 107 4 0 38 chain 8058 chrX 155270560 + 70009055 70009160 L1MA7 2200 + 1349 1454 170705 105 chain 6296 chrX 155270560 + 70010792 70010863 L1PA4 6152 - 0 71 182833 71 chain 8364 chrX 155270560 + 70010864 70010956 L1PA4 6152 + 5776 5869 169052 41 0 1 51 chain 57913 chrX 155270560 + 70016393 70017186 L1PA16 3655 + 2678 3462 54028 30 3 0 194 1 4 16 1 0 4 9 5 273 1 0 85 3 1 120 2 1 51 chain 70706 chrX 155270560 + 70029833 70030650 L1PA7 6471 + 5650 6469 48064 806 0 2 11 chain 109453 chrX 155270560 + 70030881 70032452 L1PA5 6144 - 4 1254 34257 1112 14 0 42 307 0 96 chain 154576 chrX 155270560 + 70032452 70034192 L1PA5 6144 + 3136 4873 24037 546 1 0 823 2 0 368 chain 15394 chrX 155270560 + 70035801 70036077 L1PB1 5432 - 12 264 140215 16 1 0 13 1 0 21 1 0 22 14 12 4 1 0 5 2 0 30 14 1 15 1 0 45 1 0 15 2 1 52 chain 21268 chrX 155270560 + 70041147 70041535 MSTA 426 + 0 426 122961 108 5 29 16 1 5 50 2 0 9 48 46 19 23 37 107 chain 545861 chrX 155270560 + 70058348 70064471 L1PA4 6152 + 0 6151 1965 456 12 6 118 1 0 155 0 1 522 0 1 146 0 9 70 0 1 2867 1 4 303 0 1 130 0 21 527 4 1 128 0 1 683 chain 17648 chrX 155270560 + 70065929 70066145 U3 216 - 0 216 133843 216 chain 18707 chrX 155270560 + 70077643 70078017 L1PB1 5432 + 5053 5395 130926 50 1 2 11 4 1 21 1 0 9 16 11 9 2 0 53 2 1 16 1 0 43 1 0 14 27 15 18 11 8 11 2 0 24 1 0 21 1 0 4 chain 28662 chrX 155270560 + 70080911 70081210 AluYa5 310 - 11 310 90479 299 chain 463389 chrX 155270560 + 70082831 70088881 L1PA8 5853 + 108 5843 8278 194 20 8 37 2 0 358 2 0 172 0 1 35 0 1 92 0 1 9 0 2 55 1 2 26 11 1 452 322 0 44 20 30 390 0 1 29 0 2 430 0 4 404 1 0 37 1 0 4 0 1 57 2 5 149 0 1 79 9 1 166 1 2 273 0 23 815 3 1 79 2 1 35 0 1 392 2 0 67 2 1 8 1 2 99 0 1 133 1 0 243 1 0 44 3 1 47 0 1 20 1 0 13 1 0 9 0 1 40 2 1 19 2 1 82 chain 6694 chrX 155270560 + 70098389 70098464 L1PA6 6164 + 6072 6147 179731 75 chain 5605 chrX 155270560 + 70101465 70101566 L1MA3 4352 + 4237 4332 189033 23 2 0 22 1 0 5 6 5 22 1 0 14 1 0 4 chain 6862 chrX 155270560 + 70105306 70105422 L1MB1 2102 + 1457 1567 178479 8 0 1 32 1 0 7 0 1 32 15 8 21 chain 74413 chrX 155270560 + 70107523 70108983 L1M1 2793 + 512 1855 46309 10 3 0 10 2 1 8 1 0 13 267 175 11 9 5 20 4 1 6 2 0 25 8 7 26 2 0 9 1 0 54 3 1 8 1 0 68 0 1 12 2 1 19 1 0 105 9 9 18 4 6 38 1 0 69 4 0 21 7 0 122 0 3 81 24 22 227 0 4 73 28 30 24 chain 88196 chrX 155270560 + 70112026 70113396 L1PA8 5853 + 1617 2668 40300 273 303 0 136 1 0 62 2 6 379 20 0 127 0 1 67 chain 248770 chrX 155270560 + 70113406 70116707 L1PA8 5853 + 2673 5679 16325 312 1 3 136 0 1 260 3 0 64 306 0 35 1 0 236 0 1 271 0 11 331 0 1 477 0 1 106 1 0 90 0 2 504 1 0 49 1 0 46 2 0 24 4 5 40 chain 31769 chrX 155270560 + 70121614 70122370 Tigger3b 1229 - 75 518 81218 21 0 5 157 0 1 8 0 5 5 320 0 168 19 15 58 chain 9670 chrX 155270560 + 70124517 70124634 MER33 330 + 0 117 162244 117 chain 23458 chrX 155270560 + 70129488 70129771 AluSp 311 + 9 288 113331 111 6 0 42 0 2 124 chain 523190 chrX 155270560 + 70158179 70163960 L1PA3long 6157 - 368 6157 4851 445 0 1 35 0 1 1428 0 2 1946 0 1 5 0 1 1421 0 1 150 0 1 351 chain 3425 chrX 155270560 + 70174919 70174959 MADE1 96 + 3 44 216656 27 0 1 13 chain 111658 chrX 155270560 + 70183539 70184760 L1PA3long 6157 + 4936 6157 33758 1221 chain 11038 chrX 155270560 + 70208842 70208974 MER66C 541 - 409 541 156060 132 chain 20802 chrX 155270560 + 70212140 70212499 THE1B 368 - 0 366 124592 56 7 6 63 62 68 58 8 10 105 chain 152032 chrX 155270560 + 70212502 70216457 L1MA3 4352 - 1209 4114 24332 265 0 2 43 317 0 312 9 4 11 15 19 109 0 1 8 0 1 42 1 0 13 1 0 33 0 3 166 0 1 203 3 4 31 0 1 37 1364 700 24 1 0 29 1 0 65 0 11 7 40 29 91 8 10 77 1 2 16 2 0 31 19 10 210 72 6 5 0 1 27 0 2 55 1 0 7 1 2 104 3 0 75 chain 5973 chrX 155270560 + 70215377 70215485 MADE1 96 - 1 96 185484 42 29 16 37 chain 26746 chrX 155270560 + 70222258 70222634 THE1C 375 + 0 375 97178 63 22 23 95 1 0 169 1 0 25 chain 4275 chrX 155270560 + 70222818 70222863 L1PA8 5853 + 5519 5564 203537 45 chain 22608 chrX 155270560 + 70222864 70223159 L1PA8 5853 + 5564 5853 117552 46 2 0 69 1 0 15 3 2 44 2 1 19 1 0 93 chain 6697 chrX 155270560 + 70233343 70233484 L1MC1 2226 + 2061 2183 179707 22 5 0 20 3 1 17 1 0 7 18 8 16 1 0 31 chain 28411 chrX 155270560 + 70263299 70263656 L1PA7 6471 - 3 348 91531 143 0 1 44 15 4 77 1 0 68 1 0 8 chain 25462 chrX 155270560 + 70268009 70268296 AluSp 311 - 14 301 102396 287 chain 22208 chrX 155270560 + 70295633 70295928 AluSq 315 + 1 292 119311 126 23 18 120 0 1 26 chain 4337 chrX 155270560 + 70296942 70296994 MER2 342 + 14 66 202739 52 chain 23419 chrX 155270560 + 70336349 70336637 AluSp 311 + 10 286 113545 120 12 0 156 chain 21901 chrX 155270560 + 70377942 70378233 AluJb 308 - 23 307 120613 122 20 13 149 chain 24855 chrX 155270560 + 70417373 70417668 AluSp 311 - 16 311 105595 295 chain 35806 chrX 155270560 + 70484229 70484776 LTR7B 505 + 0 505 75123 139 0 10 43 71 0 35 2 0 5 2 25 184 14 13 20 7 6 25 chain 97287 chrX 155270560 + 70487042 70488523 HERVH-int 3825 + 2282 3825 37487 13 0 1 112 0 1 5 5 4 365 18 7 183 165 0 43 43 42 101 0 12 131 1 0 115 0 227 181 chain 33574 chrX 155270560 + 70492141 70492681 LTR7B 505 + 0 505 78278 20 0 1 120 0 10 57 17 15 10 2 0 5 8 4 7 8 0 32 34 0 14 0 5 113 0 1 27 14 13 22 5 4 25 chain 13667 chrX 155270560 + 70527427 70527594 Tigger2a 444 - 67 234 145719 167 chain 8312 chrX 155270560 + 70546273 70546390 LTR10E 629 - 0 114 169321 6 1 0 55 9 7 46 chain 8643 chrX 155270560 + 70546401 70546541 LTR10E 629 + 490 627 167524 71 23 21 41 1 0 4 chain 25505 chrX 155270560 + 70560159 70560462 AluSg4 309 - 7 309 102202 171 1 0 131 chain 165622 chrX 155270560 + 70560528 70562436 SVA_D 2077 - 0 2071 22564 638 0 99 111 50 0 67 0 1 76 0 51 48 1 0 4 0 38 27 2 1 191 0 37 634 11 0 48 chain 3083 chrX 155270560 + 70561277 70561327 SVA_D 2077 - 672 721 121604 7 2 0 9 0 1 32 chain 22515 chrX 155270560 + 70564517 70564783 AluSp 311 - 19 286 117966 84 1 2 181 chain 34552 chrX 155270560 + 70577848 70578296 MER4A1 472 - 0 472 76832 48 1 0 80 6 8 90 0 21 208 0 2 15 chain 15825 chrX 155270560 + 70580190 70580390 HSMAR2 1300 - 990 1194 138876 95 0 4 105 chain 9009 chrX 155270560 + 70604562 70604715 Tigger4a 237 + 54 237 165547 15 13 18 27 1 8 49 1 19 47 chain 4278 chrX 155270560 + 70661487 70661539 L1MA5A 2387 - 92 144 203496 52 chain 171690 chrX 155270560 + 70661543 70663528 L1PA6 6164 - 23 2015 21858 434 0 2 343 0 1 62 1 5 380 1 0 108 0 2 489 2 1 165 chain 24452 chrX 155270560 + 70668851 70669139 AluSp 311 - 12 311 107792 21 0 9 199 0 2 68 chain 143752 chrX 155270560 + 70671329 70672966 SVA_D 2077 - 0 2077 25525 5 2 0 91 1 5 531 4 0 19 0 176 62 12 13 10 0 269 865 1 0 16 3 0 15 chain 19522 chrX 155270560 + 70686943 70687168 SVA_A 1864 - 0 229 128588 14 0 2 187 0 2 24 chain 39853 chrX 155270560 + 70691430 70691957 MER51A 677 - 0 677 69529 62 1 0 28 2 0 45 1 0 180 0 1 10 0 152 19 3 4 176 chain 10709 chrX 155270560 + 70703137 70703274 Tigger1 2417 - 580 716 157381 10 1 0 126 chain 7897 chrX 155270560 + 70710922 70711008 HY3 101 - 6 92 171669 86 chain 7300 chrX 155270560 + 70714331 70714426 MER30 238 + 137 238 175449 14 5 11 76 chain 407254 chrX 155270560 + 70716700 70721741 HERV9-int 5642 - 844 5636 9872 275 1 0 740 1 2 340 3 4 881 0 15 148 0 2 1280 35 9 73 6 91 143 318 0 79 6 0 107 2 0 603 chain 41312 chrX 155270560 + 70721768 70722365 LTR12 884 - 0 884 67517 61 13 253 183 0 113 215 65 0 34 1 0 25 chain 25275 chrX 155270560 + 70730683 70730978 AluSp 311 + 12 307 103343 295 chain 4510 chrX 155270560 + 70733944 70733999 LTR12B 2670 + 2115 2170 200677 55 chain 12173 chrX 155270560 + 70737009 70737337 L1MA3 4352 + 4054 4352 151522 10 0 1 28 100 78 81 8 6 24 2 1 5 1 0 29 1 0 4 1 0 5 11 8 18 chain 14172 chrX 155270560 + 70748875 70749370 LTR12 884 - 699 884 143979 42 309 0 69 1 0 74 chain 5541 chrX 155270560 + 70750472 70750718 LTR12 884 - 547 641 189648 24 1 0 5 140 1 36 11 0 24 1 0 4 chain 3037 chrX 155270560 + 70750521 70750642 LTR12 884 - 589 643 210157 17 57 16 10 28 2 9 chain 25517 chrX 155270560 + 70756812 70757117 AluSp 311 - 6 311 102147 88 0 1 84 1 0 132 chain 7506 chrX 155270560 + 70768306 70768472 L1PA15 4387 + 4188 4356 174124 19 4 0 9 3 9 31 20 21 10 0 3 24 3 1 13 2 0 28 chain 101702 chrX 155270560 + 70821274 70823287 L1MA2 4263 - 150 1500 36342 9 1 0 39 22 7 28 322 0 34 0 1 29 1 0 8 1 0 150 3 0 100 317 0 46 1 0 67 1 0 9 6 2 17 3 0 320 3 5 176 1 0 84 1 2 69 2 3 124 0 2 19 chain 18104 chrX 155270560 + 70840540 70840820 MER1B 344 - 0 308 132588 63 6 15 100 13 33 41 16 15 41 chain 5430 chrX 155270560 + 70845605 70845703 MADE1 96 + 0 96 190705 33 25 23 40 chain 38737 chrX 155270560 + 70850770 70851613 MER41A 554 + 15 554 71096 7 0 1 85 8 13 218 2 0 29 322 10 73 0 4 99 chain 21531 chrX 155270560 + 70863061 70864192 L1PB3 3668 - 110 794 41841 6 0 5 18 3 1 23 8 5 16 15 6 87 2 1 14 1 0 69 1 3 13 1 0 99 476 42 137 13 7 19 2 0 16 1 0 77 0 6 14 chain 130580 chrX 155270560 + 70864220 70865715 SVA_B 1603 - 0 1562 27947 588 1 0 25 1 0 14 1 0 98 4 0 13 1 0 13 1 0 187 0 37 136 0 39 412 chain 31734 chrX 155270560 + 70865814 70867481 L1PB3 3668 - 802 1531 41841 111 314 0 66 1 0 4 1 0 5 0 2 13 2 1 105 11 7 59 1 0 4 0 1 143 0 2 7 713 89 87 0 3 20 chain 14470 chrX 155270560 + 70873039 70873619 THE1A-int 1579 - 547 1137 44358 90 8 11 201 5 13 222 1 0 53 chain 181039 chrX 155270560 + 70873647 70875736 L1PA5 6144 - 6 2104 20894 580 0 1 949 0 4 259 1 5 300 chain 11027 chrX 155270560 + 70875737 70876179 THE1A-int 1579 - 1137 1579 44358 442 chain 26786 chrX 155270560 + 70876179 70876529 THE1A 353 - 0 351 97025 58 0 2 173 11 10 108 chain 137313 chrX 155270560 + 70895049 70897402 SVA_A 1864 + 15 1863 26587 482 0 40 36 17 16 23 5 8 34 1 0 35 3 0 36 6 4 32 0 2 49 3 0 19 5 5 17 429 80 30 4 7 101 39 0 73 1 0 19 154 0 700 chain 2062 chrX 155270560 + 70895985 70896152 SVA_F 1814 + 387 636 238075 11 37 0 13 37 193 15 38 1 16 chain 4304 chrX 155270560 + 70896163 70896256 SVA_F 1814 + 375 661 203167 36 33 226 24 chain 770 chrX 155270560 + 70896416 70896455 SVA_A 1864 + 813 850 134003 27 2 0 10 chain 4799 chrX 155270560 + 70896548 70896702 SVA_A 1864 + 756 832 72879 7 82 4 65 chain 1600 chrX 155270560 + 70896556 70896637 SVA_A 1864 + 984 1062 134003 37 3 0 41 chain 28575 chrX 155270560 + 70925070 70925581 L1PA13 3608 - 146 649 90846 14 2 0 4 2 0 26 2 1 17 18 15 23 11 12 12 11 10 55 2 0 26 0 1 87 6 5 15 13 14 67 7 8 91 chain 21551 chrX 155270560 + 70928418 70928672 AluY 311 + 49 303 121959 74 1 0 9 0 1 170 chain 12771 chrX 155270560 + 70949009 70949174 L1PA13 3608 + 2959 3125 149172 84 5 6 76 chain 30996 chrX 155270560 + 70971680 70972217 L1PA13 3608 - 146 649 82521 14 2 0 4 2 0 26 1 0 18 6 4 10 2 1 23 0 1 23 15 14 51 2 0 7 0 1 20 0 1 85 6 5 17 38 12 76 5 6 84 chain 4686 chrX 155270560 + 71009008 71009077 MER21C 908 + 507 574 198686 4 1 0 17 1 0 46 chain 23695 chrX 155270560 + 71013547 71013845 AluSc 308 + 11 308 112056 246 2 1 50 chain 296864 chrX 155270560 + 71018307 71021682 L1HS 6032 - 1758 5138 13596 108 0 2 369 1 2 2103 0 2 794 chain 154561 chrX 155270560 + 71021682 71023431 L1PA4 6152 + 4394 6143 24025 673 0 1 725 2 1 349 chain 108065 chrX 155270560 + 71026208 71027464 L1PA6 6164 - 11 1267 34672 150 1 0 26 1 2 1078 chain 112049 chrX 155270560 + 71027464 71028774 L1PA6 6164 + 3562 4874 33651 141 1 0 631 0 2 22 1 2 514 chain 510200 chrX 155270560 + 71036561 71042685 L1PA5 6144 + 0 6142 6146 125 1 15 13 3 15 240 22 31 185 0 1 186 0 17 341 9 0 658 0 9 472 8 0 89 13 12 531 1 4 178 0 4 231 2 3 225 0 2 75 4 1 165 6 7 159 39 2 59 4 5 280 1 5 122 0 1 160 1 0 1058 0 1 299 5 6 143 4 0 7 chain 525213 chrX 155270560 + 71049533 71055956 L1PA7 6471 + 16 6468 4667 375 0 1 308 5 25 617 13 13 100 14 15 217 1 4 353 5 7 408 0 1 36 0 1 134 0 1 7 11 6 451 0 4 397 1 0 1141 0 1 231 6 34 202 39 13 502 1 0 18 2 1 32 0 1 134 4 6 323 1 2 323 4 0 7 chain 15678 chrX 155270560 + 71057229 71057423 L1PA6 6164 + 5962 6156 139340 194 chain 537640 chrX 155270560 + 71057794 71063914 L1PA4 6152 - 11 6146 3212 142 0 3 272 0 2 28 0 1 1341 0 4 2146 0 2 1385 0 3 806 chain 33686 chrX 155270560 + 71076181 71076716 L1PA13 3608 - 139 669 78114 21 2 0 4 2 0 20 4 1 23 6 4 10 2 1 15 0 1 7 0 1 26 8 7 55 2 0 26 0 1 87 26 30 78 0 1 111 chain 25627 chrX 155270560 + 71080913 71081266 THE1A 353 - 0 353 101595 118 5 6 109 12 11 109 chain 125521 chrX 155270560 + 71081271 71082836 THE1A-int 1579 - 5 1578 29236 4 0 1 162 0 1 706 0 1 46 0 5 647 chain 133845 chrX 155270560 + 71096098 71097628 SVA_C 1631 - 7 1615 27251 10 4 0 741 7 88 595 3 0 6 4 7 156 0 1 4 chain 193729 chrX 155270560 + 71097777 71100768 L1MA2 4263 + 1425 4083 19707 33 0 2 6 2 0 27 3 17 29 3 0 76 14 17 231 0 1 106 1 0 157 0 4 32 305 0 205 3 0 154 0 2 120 6 4 127 0 1 132 1 2 614 36 16 17 12 0 9 1 0 18 15 11 67 5 4 38 0 5 98 3 0 149 2 1 8 1 0 93 7 0 25 chain 124924 chrX 155270560 + 71101965 71103449 L1PA6 6164 + 4657 6162 29417 98 0 8 44 4 0 681 1 3 517 1 3 55 0 13 83 chain 112243 chrX 155270560 + 71103541 71106410 L1PB1 5432 - 5 1601 33604 5 2 0 4 1 0 14 1 0 11 2 1 22 1 0 24 2 0 14 1 0 5 2 0 19 8 0 8 2 0 4 1 0 15 1 0 45 5 4 10 3 2 50 1319 73 291 3 2 6 0 1 89 1 0 75 8 6 89 3 7 537 3 0 163 chain 12332 chrX 155270560 + 71108777 71108915 L1PA5 6144 + 5753 5891 150885 138 chain 21782 chrX 155270560 + 71108916 71109169 L1PA5 6144 + 5891 6144 121096 253 chain 542487 chrX 155270560 + 71116924 71123061 L1PA4 6152 - 1 6150 2433 112 0 1 1725 4 5 609 0 3 531 1 0 260 0 1 1242 0 5 919 5 2 160 1 0 60 0 5 192 6 7 310 chain 29216 chrX 155270560 + 71123228 71123537 AluYa5 310 - 1 310 87979 309 chain 61995 chrX 155270560 + 71124165 71124857 L1PA3long 6157 - 1 693 51905 692 chain 14673 chrX 155270560 + 71167608 71167890 L1PB1 5432 + 5169 5427 142351 49 8 7 11 1 0 34 0 1 9 1 0 14 26 14 18 9 6 12 2 0 26 1 0 22 1 0 12 1 0 18 2 0 5 chain 32238 chrX 155270560 + 71183922 71184298 L1PA7 6471 - 7 384 80461 155 1 2 220 chain 7570 chrX 155270560 + 71185821 71185914 U6 107 - 0 93 173722 93 chain 151137 chrX 155270560 + 71198613 71200284 L1PA5 6144 - 0 1672 24456 333 0 1 1338 chain 29871 chrX 155270560 + 71203542 71203916 MER41A 554 - 179 554 85207 282 6 7 86 chain 166715 chrX 155270560 + 71203928 71207401 MER41-int 2638 - 5 2552 22430 57 2 15 36 1 2 63 7 8 424 1 0 117 2 0 16 317 0 20 3 1 12 1 6 125 2 0 214 0 2 168 1 0 20 1 2 5 1 0 90 0 2 14 0 1 189 29 29 14 28 25 25 0 1 40 0 1 66 452 80 76 0 3 28 40 1 36 0 3 137 1 0 8 5 0 80 180 0 69 109 97 21 31 14 58 16 11 15 chain 12659 chrX 155270560 + 71208580 71208733 MER41A 554 - 0 153 149610 153 chain 25141 chrX 155270560 + 71307772 71308101 AluSp 311 + 0 302 104056 45 26 0 87 1 0 170 chain 4006 chrX 155270560 + 71316546 71316614 L1MA5A 2387 - 7 70 207307 5 1 0 16 2 0 19 1 0 10 1 0 13 chain 58915 chrX 155270560 + 71326264 71326968 L1PA6 6164 + 5454 6160 53446 244 0 2 5 3 1 31 0 2 235 3 2 39 0 1 144 chain 37890 chrX 155270560 + 71383396 71383989 MER51A 677 + 0 675 72296 6 0 3 143 7 12 12 0 135 48 4 5 52 61 0 97 1 0 69 1 0 33 0 1 59 chain 1310 chrX 155270560 + 71383668 71383700 MER51A 677 + 253 285 196586 32 chain 3862 chrX 155270560 + 71386188 71386262 L1MD2 1676 + 1100 1174 209415 19 4 5 9 5 4 37 chain 41627 chrX 155270560 + 71388707 71389305 MER51A 677 - 0 677 67122 60 0 3 81 1 0 5 2 0 96 7 111 90 0 1 30 10 0 21 17 0 37 6 7 135 chain 124745 chrX 155270560 + 71395207 71396644 L1PA6 6164 + 4728 6162 29466 220 2 0 95 0 1 248 2 1 22 0 1 336 0 1 502 3 0 7 chain 169441 chrX 155270560 + 71397823 71399841 SVA_E 1901 + 3 1901 22124 150 2 0 170 4 1 328 0 1 164 1 0 26 1 0 37 0 1 4 14 38 42 98 0 130 1 0 33 40 0 773 chain 2790 chrX 155270560 + 71398766 71398808 SVA_E 1901 + 1014 1057 81891 38 0 1 4 chain 1578 chrX 155270560 + 71398826 71398851 SVA_E 1901 + 1230 1255 153560 25 chain 3466 chrX 155270560 + 71399028 71399068 SVA_E 1901 + 953 1002 75395 3 3 0 11 0 12 23 chain 14764 chrX 155270560 + 71405954 71406156 MER30 238 + 0 218 142048 105 8 19 47 0 2 23 0 3 19 chain 7511 chrX 155270560 + 71408551 71408665 AluJr 308 - 186 298 174085 81 20 18 13 chain 44363 chrX 155270560 + 71413165 71414896 Tigger3b 1229 + 323 1146 63740 4 0 1 68 0 3 172 0 5 7 0 2 20 1140 209 47 0 4 127 0 10 11 2 0 133 chain 10232 chrX 155270560 + 71418436 71418560 7SLRNA 320 + 19 143 159461 124 chain 55710 chrX 155270560 + 71433011 71433724 LTR17 781 + 0 754 55298 59 1 0 102 1 0 18 1 0 93 0 1 54 1 0 368 2 46 13 chain 39581 chrX 155270560 + 71440240 71440733 LTR19A 502 + 6 502 69919 298 1 0 143 20 24 31 chain 52514 chrX 155270560 + 71447595 71448184 LTR10C 591 + 0 591 57294 510 0 2 79 chain 21645 chrX 155270560 + 71449769 71450044 AluY 311 + 9 302 121591 44 0 17 62 6 7 163 chain 26221 chrX 155270560 + 71450099 71450454 LTR19A 502 + 146 502 99121 85 9 10 63 1 0 97 2 1 55 13 15 30 chain 22589 chrX 155270560 + 71457201 71457465 AluY 311 + 35 302 117635 91 0 1 148 0 2 25 chain 23269 chrX 155270560 + 71461404 71461679 AluSp 311 + 13 294 114344 19 0 1 61 0 6 144 1 0 50 chain 25892 chrX 155270560 + 71470925 71471225 AluY 311 + 0 295 100470 126 5 0 169 chain 3509 chrX 155270560 + 71486576 71486616 MER4E1 777 - 74 114 215224 40 chain 25403 chrX 155270560 + 71497422 71497719 AluY 311 + 18 311 102667 100 4 0 193 chain 8275 chrX 155270560 + 71504795 71504893 HY3 101 - 0 98 169541 98 chain 27752 chrX 155270560 + 71506296 71506599 AluYf4 310 - 7 310 93860 303 chain 28652 chrX 155270560 + 71508142 71508494 THE1A 353 + 0 351 90516 110 1 0 241 chain 8816 chrX 155270560 + 71517109 71517223 L1MB2 1706 - 12 124 166573 83 1 0 13 1 0 16 chain 2640 chrX 155270560 + 71546893 71546923 MIR 256 - 162 192 231162 30 chain 30813 chrX 155270560 + 71590512 71590887 MLT2A1 477 - 92 477 82845 52 0 11 122 0 1 19 0 1 8 3 0 171 chain 11160 chrX 155270560 + 71596843 71597009 U2 167 - 1 161 155587 24 2 0 3 2 0 10 12 10 113 chain 9118 chrX 155270560 + 71621439 71621694 L1MB7 1623 - 450 1152 164975 15 14 15 66 44 49 21 28 29 32 5 445 30 chain 47863 chrX 155270560 + 71647065 71647604 L1PA4 6152 + 5609 6151 60581 393 0 3 146 chain 14068 chrX 155270560 + 71656200 71656463 L1MDa 1598 + 1040 1295 144322 60 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250 3 1 14 2 0 48 14 10 12 0 1 4 1 0 82 12 8 13 2 0 6 1 0 84 1 0 110 5 4 6 4 0 35 2 0 15 2 1 4 1 0 19 2 1 39 6 0 10 chain 5640 chrX 155270560 + 71729259 71729326 L1MA10 1535 - 171 238 188659 67 chain 12065 chrX 155270560 + 71729354 71729535 L1MA10 1535 + 1009 1196 151920 18 4 0 23 1 0 17 1 8 55 0 1 12 0 3 50 chain 5940 chrX 155270560 + 71738158 71738264 L1MB8 1703 - 119 220 185778 29 0 1 36 5 0 10 9 8 17 chain 24558 chrX 155270560 + 71745419 71745692 AluY 311 + 38 311 107201 273 chain 129322 chrX 155270560 + 71778917 71780428 SVA_B 1603 + 24 1603 28237 18 12 5 120 4 6 23 1 0 431 0 40 126 0 1 85 4 0 41 4 0 15 0 41 627 chain 121918 chrX 155270560 + 71780812 71782517 L1PB1 5432 + 3721 5422 30408 15 0 7 69 0 5 7 1 0 166 4 12 9 1 0 42 9 14 48 0 1 407 0 4 66 0 1 33 3 0 475 0 1 10 4 1 24 1 0 7 1 0 13 8 4 6 2 0 52 2 1 10 28 29 14 10 9 13 2 0 6 16 7 17 2 0 6 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 chain 24670 chrX 155270560 + 71804603 71804884 L1PA5 6144 - 0 281 106605 281 chain 508485 chrX 155270560 + 71805301 71811418 L1PA6 6164 + 0 6162 6281 460 6 5 279 13 14 30 3 20 920 1 0 432 0 1 172 0 1 6 2 1 117 0 1 109 0 1 205 0 3 137 12 0 9 0 12 54 0 2 199 0 1 339 1 0 93 0 2 725 10 14 285 1 0 63 0 1 359 0 14 907 11 12 157 chain 10673 chrX 155270560 + 71817402 71817579 L1MA3 4352 - 23 193 157511 13 1 0 28 1 0 5 2 1 24 2 0 23 5 1 29 0 1 5 0 1 39 chain 72545 chrX 155270560 + 71826425 71827514 L1MA3 4352 - 0 1052 47245 16 11 8 11 1 0 13 0 1 15 8 6 24 2 0 78 1 0 11 5 6 47 54 25 13 1 0 178 4 5 160 0 1 56 2 1 40 0 1 255 2 0 81 chain 17361 chrX 155270560 + 71846417 71846727 MER44A 345 - 24 342 134625 20 2 1 27 9 7 74 7 15 74 0 2 32 10 9 22 18 20 15 chain 28437 chrX 155270560 + 71874647 71874946 AluYa5 310 - 11 310 91433 299 chain 3243 chrX 155270560 + 71877096 71877135 L1MC4a 1092 - 523 562 220165 39 chain 93729 chrX 155270560 + 71889232 71890291 L1PA4 6152 - 1 1066 38428 777 4 6 66 0 4 212 chain 143516 chrX 155270560 + 71890292 71891863 L1PA4 6152 + 3495 5066 25558 1571 chain 73686 chrX 155270560 + 71893665 71894479 L1PA4 6152 - 9 822 46688 181 1 0 632 chain 131126 chrX 155270560 + 71900738 71902794 SVA_F 1814 + 335 1814 27829 500 72 12 9 1 0 22 2 3 67 130 18 58 181 0 153 1 0 83 223 0 554 chain 11166 chrX 155270560 + 71901411 71901541 SVA_F 1814 + 1012 1142 76623 130 chain 7902 chrX 155270560 + 71901599 71901691 SVA_F 1814 + 1200 1291 76623 74 1 0 17 chain 5804 chrX 155270560 + 71902017 71902186 SVA_F 1814 + 1084 1219 95262 43 33 0 43 1 0 17 1 0 27 0 1 4 chain 2743 chrX 155270560 + 71902062 71902093 SVA_F 1814 + 905 936 176297 31 chain 3647 chrX 155270560 + 71902186 71902240 SVA_F 1814 + 993 1047 135537 54 chain 6869 chrX 155270560 + 71903656 71903769 L1ME1 1623 - 138 246 178435 39 6 0 49 4 5 15 chain 183448 chrX 155270560 + 71919416 71922599 MER4-int 2692 + 74 2679 20634 21 1 0 4 2 0 18 9 0 210 7 4 13 14 14 20 11 12 118 0 1 6 1 0 17 9 0 21 0 9 37 1 2 113 2 3 36 0 16 34 9 10 289 1 0 51 1 0 20 1 0 116 1 0 105 1 17 23 1 0 28 5 6 94 1 0 190 1 3 131 1 0 66 301 0 116 0 1 36 1 2 21 1 0 13 14 15 28 2 0 86 7 6 103 300 0 79 5 4 31 1 0 12 1 0 60 0 10 104 chain 32191 chrX 155270560 + 71950480 71950939 LTR7B 505 + 0 503 80540 105 0 10 60 15 22 28 3 27 26 0 2 41 0 2 39 1 0 26 4 5 48 2 1 61 chain 88318 chrX 155270560 + 71953008 71953980 LTR5_Hs 974 + 0 974 40254 183 0 1 383 0 1 406 chain 3019 chrX 155270560 + 71964878 71964990 MIR 256 + 63 181 224630 31 65 71 16 chain 271186 chrX 155270560 + 71969989 71974667 L1PA6 6164 - 4 3323 15130 473 1 0 57 5 9 306 1 0 520 0 6 343 0 1 263 0 1 347 2 0 132 13 0 29 0 1 127 0 1 134 0 5 11 1 2 108 1357 0 93 11 9 276 4 1 64 chain 102401 chrX 155270560 + 71973073 71974219 L1PA4 6152 - 9 1154 36113 251 1 0 894 chain 93539 chrX 155270560 + 71974696 71975751 L1PA5 6144 - 3 1057 38499 109 1 0 945 chain 11050 chrX 155270560 + 71977574 71977708 L1PA4 6152 - 0 134 156015 134 chain 225913 chrX 155270560 + 71978120 71980959 L1P2 5180 - 2334 5176 17534 118 1 0 226 0 5 1016 1 0 217 1 0 466 0 15 220 1 0 48 10 9 60 8 0 76 2 1 125 1 0 46 1 0 48 1 0 146 chain 7216 chrX 155270560 + 71983929 71984022 L1MA4A 3247 + 3040 3132 175965 67 1 0 25 chain 142375 chrX 155270560 + 71985929 71988017 L1PB1 5432 + 3417 5416 25747 166 8 7 132 63 24 762 7 4 5 0 3 25 0 1 4 1 0 76 3 0 51 0 1 30 0 1 85 0 8 72 24 0 11 15 14 195 14 13 7 3 0 17 4 3 11 1 0 11 9 5 7 2 0 52 25 23 37 2 1 15 1 0 4 3 0 13 24 14 5 1 0 14 2 0 27 1 0 15 4 7 9 1 0 12 chain 4481 chrX 155270560 + 71992076 71992133 MER53 195 + 0 57 201005 57 chain 210629 chrX 155270560 + 72031431 72034025 L1PA8A 6298 - 7 2631 18461 397 1 0 226 1 0 184 6 1 409 0 5 249 2 0 27 1 3 98 0 4 109 10 6 79 1 0 253 0 32 333 1 2 207 chain 25128 chrX 155270560 + 72040345 72040613 AluYf4 310 - 4 272 104139 268 chain 505953 chrX 155270560 + 72045053 72051239 L1PA7 6471 - 1 6466 6468 383 3 0 200 0 5 172 1 0 83 4 0 10 1 3 690 0 11 513 1 11 318 1 0 125 1 4 5 3 0 451 6 4 349 0 1 50 4 0 134 0 87 224 1 2 591 4 3 6 1 0 1300 4 14 211 23 193 106 11 10 196 chain 28105 chrX 155270560 + 72053283 72053636 L1PA8 5853 + 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207 1 2 333 0 32 253 1 0 79 10 6 109 0 4 98 1 3 27 2 0 249 0 5 423 5 1 170 1 0 226 1 0 397 chain 142421 chrX 155270560 + 72172472 72174565 L1PB1 5432 - 16 2015 25740 12 1 0 9 4 7 18 1 0 24 2 0 14 1 0 5 24 14 13 3 0 4 1 0 15 2 1 37 25 23 52 2 0 7 9 5 11 1 0 11 4 3 17 3 0 7 14 13 195 15 14 10 24 0 62 0 8 96 0 1 30 0 1 51 3 0 76 1 0 4 0 1 25 0 3 5 7 4 762 68 24 132 8 7 166 chain 226780 chrX 155270560 + 72179533 72182371 L1P2 5180 + 4 2846 17493 146 1 0 44 1 0 50 1 0 202 8 0 60 10 9 48 1 0 224 0 15 462 1 0 217 1 0 1016 0 5 226 1 0 118 chain 11050 chrX 155270560 + 72182784 72182918 L1PA4 6152 + 6018 6152 156014 134 chain 93539 chrX 155270560 + 72184743 72185798 L1PA5 6144 + 5087 6141 38498 945 1 0 109 chain 271420 chrX 155270560 + 72185827 72190505 L1PA6 6164 + 2841 6160 15116 64 4 1 276 11 9 89 1357 0 112 1 2 11 0 5 134 0 1 127 0 1 29 13 0 132 2 0 347 0 1 263 0 1 343 0 6 520 1 0 306 5 9 57 1 0 473 chain 102355 chrX 155270560 + 72186273 72187421 L1PA4 6152 + 4996 6143 36182 896 1 0 251 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chrX 155270560 + 72336754 72342777 L1PA4 6152 + 6 6151 4668 148 0 1 146 7 8 271 1 0 128 12 5 57 0 128 245 0 2 101 1 0 1440 2 1 484 1 0 1116 0 2 1143 1 0 719 chain 2989 chrX 155270560 + 72351103 72351136 MLT2B2 565 - 12 45 225265 33 chain 31778 chrX 155270560 + 72352499 72352846 L1PA4 6152 + 5796 6143 81201 347 chain 3498 chrX 155270560 + 72359163 72359201 MER90 571 + 510 548 215381 38 chain 260731 chrX 155270560 + 72369342 72373203 L1PB1 5432 - 5 3784 15656 4 1 0 21 1 0 11 10 4 17 3 2 22 2 0 14 8 5 19 18 8 5 0 1 13 1 0 38 7 6 16 2 1 54 138 68 15 0 14 186 1 0 257 3 0 134 5 4 11 1 0 6 0 1 295 4 8 200 8 9 226 6 9 134 3 0 48 21 20 266 1 0 248 14 0 78 0 4 332 0 4 69 0 1 9 47 48 38 15 0 8 0 15 328 0 2 221 5 9 193 chain 415260 chrX 155270560 + 72385953 72391510 HERVL-int 5654 - 47 5654 9659 819 20 15 10 3 9 583 0 1 86 0 1 6 1 0 57 16 7 60 0 3 4 1 0 19 1 0 5 1 2 776 1 2 481 14 15 430 2 1 5 0 1 127 0 283 229 0 1 368 1 11 151 0 2 88 256 5 288 3 1 131 0 10 514 chain 32487 chrX 155270560 + 72391510 72391953 MLT2A1 477 - 0 473 80051 37 23 55 205 0 1 9 4 1 165 chain 28215 chrX 155270560 + 72395770 72396110 L1PA4 6152 + 4570 4910 92249 340 chain 96205 chrX 155270560 + 72396110 72397212 L1PA4 6152 + 4911 6013 37767 1102 chain 12062 chrX 155270560 + 72397213 72397352 L1PA4 6152 + 6013 6152 151932 139 chain 195156 chrX 155270560 + 72401923 72404736 L1P3 4156 + 0 2506 19570 251 1 0 69 1 0 779 0 10 5 1 0 199 1 0 46 2 3 164 7 8 352 11 1 261 304 0 149 6 5 204 chain 389194 chrX 155270560 + 72405355 72410700 L1PA7 6471 + 954 6469 10475 84 78 82 126 9 35 68 9 8 4 0 1 69 0 1 4 1 0 21 40 49 254 13 14 77 0 1 148 17 16 589 27 28 302 0 1 303 3 0 4 4 0 284 1 0 309 3 2 375 0 3 157 1 241 597 0 1 27 0 1 193 0 1 187 1 0 181 1 2 199 8 10 208 5 6 80 8 9 20 139 0 71 0 26 36 chain 2812 chrX 155270560 + 72410527 72410561 L1PA7 6471 + 6435 6469 228586 34 chain 80551 chrX 155270560 + 72411922 72413025 MER11A 1151 - 7 1151 43368 52 1 5 5 5 0 75 12 13 74 0 35 23 3 0 30 0 1 16 0 1 128 2 1 9 0 1 50 0 1 64 1 0 171 0 1 83 7 6 4 1 0 96 2 0 89 21 31 79 chain 2407 chrX 155270560 + 72415616 72415652 L1M4c 1769 + 1364 1401 234143 21 1 2 14 chain 9844 chrX 155270560 + 72425520 72425643 L1MC3 1789 + 1097 1220 161369 123 chain 5696 chrX 155270560 + 72439836 72440176 L1M1 2793 + 2350 2685 188144 30 42 44 12 198 192 45 1 0 12 chain 122885 chrX 155270560 + 72441078 72442561 L1PA6 6164 - 16 1511 30084 564 0 14 261 0 1 279 1 0 352 2 0 24 chain 1875 chrX 155270560 + 72442572 72442845 L1P1 4361 + 2160 2433 88353 273 chain 40583 chrX 155270560 + 72446127 72446615 L1P3 4156 + 2744 3229 68461 32 3 0 453 chain 1339 chrX 155270560 + 72446620 72446815 L1P1 4361 + 4148 4341 88353 157 2 0 5 0 1 17 2 1 12 chain 477234 chrX 155270560 + 72449693 72455564 L1PA6 6164 + 14 6161 7822 7 0 13 7 13 0 186 21 14 4 0 1 5 1 0 941 0 1 407 0 1 54 0 1 40 0 257 173 0 1 206 0 1 417 0 3 422 3 4 440 0 1 279 2 1 292 0 5 35 10 11 115 3 7 801 0 5 143 0 1 4 5 9 39 0 1 82 11 7 373 0 1 321 1 0 8 chain 22864 chrX 155270560 + 72466833 72467191 THE1B 368 + 0 368 116263 69 0 1 36 7 6 57 1 0 30 1 0 4 3 0 6 25 40 119 chain 185757 chrX 155270560 + 72474133 72476789 MER61-int 3695 - 5 2605 20436 336 12 0 173 14 13 12 5 6 4 0 1 249 41 37 94 1 0 10 1 5 135 15 0 199 1 2 29 10 0 222 2 0 375 3 4 10 3 5 92 1 0 10 9 7 36 0 5 40 2 0 147 1 0 7 0 1 5 2 1 116 56 31 144 2 7 30 chain 40749 chrX 155270560 + 72476789 72477315 LTR10D 510 - 0 510 68240 84 0 1 154 17 0 175 0 1 12 2 1 82 chain 526958 chrX 155270560 + 72501213 72507332 L1PA4 6152 + 12 6143 4507 18 0 1 690 0 2 711 0 1 300 0 2 408 0 6 2095 1 0 1056 1 0 211 0 1 41 0 1 587 chain 42647 chrX 155270560 + 72509750 72510414 L1PB1 5432 - 212 1686 65842 52 2 0 6 10 6 14 1 0 8 1 0 21 1 0 8 8 7 39 53 877 205 7 2 197 0 1 31 chain 105931 chrX 155270560 + 72510864 72512011 L1PA2 6032 + 4884 6031 35275 1147 chain 11464 chrX 155270560 + 72512116 72512281 L1PB1 5432 + 4686 4852 154455 140 12 13 13 chain 58081 chrX 155270560 + 72514658 72515436 L1PA13 3608 + 872 1664 53936 357 0 1 165 9 9 14 3 1 112 0 15 118 chain 516771 chrX 155270560 + 72519478 72525504 L1PA4 6152 - 11 6089 5512 340 0 1 421 0 2 461 1 0 1234 1 0 1056 1 0 74 0 2 834 1 0 40 1 3 435 4 6 289 4 51 829 chain 354254 chrX 155270560 + 72526015 72530846 L1PA8 5853 + 108 5853 11498 89 0 1 102 20 8 325 0 6 12 16 12 5 1 0 111 0 3 923 0 2 6 4 3 74 0 1 114 0 4 84 7 1 32 8 5 469 0 1 47 3 6 253 1 0 4 0 1 149 0 1 421 5 6 65 0 978 164 5 6 59 0 1 4 1 0 340 2 0 3 2 0 35 63 9 34 1 0 9 0 1 9 0 1 84 11 14 69 1 2 288 1 0 37 11 9 49 7 6 13 19 17 49 1 0 16 1 0 93 chain 100406 chrX 155270560 + 72533076 72535199 L1PB1 5432 - 12 1534 36653 16 1 0 13 1 0 18 4 3 24 2 0 14 1 0 5 334 0 19 25 12 16 6 5 39 31 29 37 20 14 12 2 1 9 3 2 14 21 19 102 7 6 184 0 10 153 256 18 7 6 0 721 chain 52084 chrX 155270560 + 72535201 72535815 L1P1 4361 + 3717 4328 57572 434 1 0 88 1 0 66 1 0 23 chain 43306 chrX 155270560 + 72538156 72538668 MER9a1 513 - 0 513 65039 66 1 2 445 chain 371018 chrX 155270560 + 72538668 72543141 HERVK9-int 4720 - 0 4684 11055 24 19 20 130 0 28 74 6 102 398 1 0 840 0 1 520 0 1 617 0 22 582 1 0 122 0 2 6 0 68 348 7 8 647 6 5 23 2 1 7 1 0 66 1 0 4 8 5 13 chain 43146 chrX 155270560 + 72544460 72544974 MER9a1 513 - 0 513 65232 229 0 1 54 6 3 24 0 1 201 chain 273085 chrX 155270560 + 72547970 72551381 L1PA6 6164 - 2 5013 15012 13 3 0 163 9 10 149 0 1 126 0 2 378 4 0 303 12 1609 22 15 1 8 0 16 126 0 1 44 0 1 560 0 1 302 0 1 161 1 0 910 0 1 102 chain 24130 chrX 155270560 + 72569839 72570171 THE1C 375 + 0 330 109589 100 23 20 154 0 1 55 chain 4054 chrX 155270560 + 72576436 72576484 L1PA7 6471 + 5262 5310 206571 48 chain 26058 chrX 155270560 + 72576484 72576794 L1PA7 6471 + 5311 5621 99800 310 chain 69286 chrX 155270560 + 72576795 72577635 L1PA7 6471 + 5621 6454 48690 95 8 0 323 0 1 414 chain 11429 chrX 155270560 + 72580690 72581011 L1PB1 5432 - 41 318 154565 21 1 0 24 2 0 13 49 37 16 3 1 8 15 0 31 10 9 10 2 1 12 3 1 38 2 0 10 7 3 12 1 0 6 1 0 24 chain 566413 chrX 155270560 + 72600828 72606850 L1HS 6032 + 10 6032 122 6022 chain 131446 chrX 155270560 + 72612895 72614556 L1PA7 6471 - 8 1683 27765 147 0 1 183 0 1 431 0 2 82 2 0 16 0 10 566 0 1 4 0 1 25 9 8 160 0 1 36 chain 49464 chrX 155270560 + 72614556 72615162 L1PA7 6471 + 5843 6450 59414 545 9 10 52 chain 498238 chrX 155270560 + 72620912 72627311 L1PA7 6471 + 5 6465 6941 238 0 1 8 7 14 139 2 0 7 1 0 61 1 0 104 3 0 165 10 15 496 7 26 641 1 2 68 25 11 27 0 1 4 1 0 50 0 13 66 0 1 335 0 2 15 4 8 109 11 0 454 10 14 441 0 1 375 0 1 391 0 1 45 1 2 835 1 0 52 1 0 280 3 36 61 2 0 171 5 6 518 19 20 121 0 1 7 chain 10900 chrX 155270560 + 72635897 72636025 L1PA5 6144 - 12 140 156586 128 chain 56763 chrX 155270560 + 72639087 72639702 L1PA3long 6157 - 0 615 54676 615 chain 12385 chrX 155270560 + 72639702 72639834 L1PA3long 6157 + 5394 5526 150691 132 chain 530380 chrX 155270560 + 72648463 72654587 L1PA4 6152 - 6 6149 4145 250 1 0 271 0 1 4 2 1 703 1 0 25 5 6 70 5 0 611 0 2 1037 1 0 1200 0 1 1195 0 19 232 4 7 392 2 3 113 chain 65904 chrX 155270560 + 72660092 72660844 L1PA4 6152 - 9 766 50135 138 2 5 506 1 3 105 chain 40694 chrX 155270560 + 72660844 72661292 L1PA4 6152 + 4943 5391 68302 448 chain 6457 chrX 155270560 + 72686872 72686955 L1MA3 4352 - 4225 4308 181576 83 chain 459166 chrX 155270560 + 72696042 72702409 L1PA7 6471 - 16 6414 8437 95 19 1 25 62 18 179 0 1 520 1 0 39 0 1 155 0 1 143 0 1 186 62 0 90 1 2 18 0 1 4 1 0 90 0 1 50 5 4 55 0 3 130 14 0 7 16 30 336 1 0 259 6 7 175 0 1 117 2 1 314 0 1 291 1 5 182 0 3 34 0 1 240 8 0 94 9 7 194 7 3 19 0 1 832 6 7 199 19 13 5 1 0 237 11 12 92 16 0 205 33 51 253 17 172 30 1 0 38 6 7 110 chain 349495 chrX 155270560 + 72702472 72707326 L1PA8A 6298 + 1682 6281 11626 658 6 21 90 3 1 14 1 5 29 1 2 96 0 1 370 0 4 38 0 1 360 2 4 21 0 1 41 17 7 35 1 0 271 0 1 113 3 0 106 1 0 248 0 3 228 350 5 93 8 7 132 0 1 136 1 0 121 19 8 545 0 78 373 0 4 52 6 7 146 0 2 11 6 7 102 chain 176557 chrX 155270560 + 72708883 72711832 L1PA11 4918 - 289 3062 21298 18 174 141 76 4 5 61 20 15 523 1 2 128 3 0 83 14 18 21 5 9 151 0 3 111 1 2 156 1 0 8 0 1 175 12 13 89 0 4 7 1 6 76 64 50 92 0 1 28 3 0 6 3 4 41 171 31 149 9 12 29 0 3 14 9 10 10 5 0 33 1 0 18 8 0 89 1 3 20 0 1 227 chain 474017 chrX 155270560 + 72711875 72717918 L1PA7 6471 - 2 6054 7911 758 0 1 7 0 1 88 1 0 628 10 1 499 0 1 56 1 0 68 2 1 101 0 2 645 0 1 83 2 1 7 0 1 405 10 14 164 9 11 11 0 3 272 4 6 27 0 1 576 1 0 473 0 1 104 0 2 667 0 1 309 1 0 8 4 5 42 chain 8073 chrX 155270560 + 72720515 72720609 MER11B 1079 - 14 108 170633 94 chain 153012 chrX 155270560 + 72720610 72722493 L1P1 4361 + 2436 4328 24227 255 8 11 49 0 5 392 6 11 342 3 2 131 1 0 514 1 0 157 1 0 23 chain 53310 chrX 155270560 + 72728450 72729173 MER4E1 777 - 18 777 56825 208 1 9 105 0 1 26 4 5 53 0 19 289 22 29 15 chain 532614 chrX 155270560 + 72730852 72736895 L1PA3long 6157 + 0 6145 3897 152 0 1 17 36 5 166 1 2 350 5 11 11 7 0 66 0 128 546 6 8 890 1 0 81 0 3 1873 0 1 1829 1 0 5 chain 12803 chrX 155270560 + 72747792 72747946 LTR7 482 + 314 469 149038 51 1 2 102 chain 265858 chrX 155270560 + 72747961 72751551 HERVH-int 3825 + 0 3824 15400 281 0 2 50 2 1 31 15 16 75 0 61 18 1 0 10 3 1 12 192 30 16 21 174 30 10 14 69 0 1 334 15 0 206 10 1 37 1 0 130 1 0 179 0 1 357 6 0 271 0 1 5 5 4 597 1 0 103 6 216 490 chain 26898 chrX 155270560 + 72753384 72753767 LTR7 482 + 0 466 96633 101 15 14 13 2 53 41 7 39 44 0 1 160 chain 310148 chrX 155270560 + 72762425 72766438 L1PA7 6471 + 2456 6469 13000 175 26 1 265 6 8 65 5 6 37 2 5 5 3 0 271 7 8 298 4 5 121 3 8 376 0 3 53 5 6 195 17 18 67 5 8 149 0 1 1004 0 3 81 0 2 581 1 2 25 1 2 12 0 1 131 5 3 12 chain 345639 chrX 155270560 + 72766438 72770896 L1PA8 5853 + 1347 5822 11742 180 1 2 485 0 4 695 1 2 167 1 0 99 0 2 38 0 1 142 0 3 47 7 0 20 13 14 178 7 8 107 16 16 346 1 3 31 0 1 72 1 0 247 0 1 354 0 1 79 0 5 157 0 5 707 1 0 47 3 5 59 13 11 54 1 0 15 7 6 59 chain 21923 chrX 155270560 + 72781259 72781496 AluYb8 318 - 12 247 120536 180 2 0 55 chain 19083 chrX 155270560 + 72795254 72795498 Tigger3b 1229 - 61 320 129872 77 0 1 88 0 10 33 0 5 25 1 0 20 chain 77903 chrX 155270560 + 72815016 72815980 L1PA7 6471 - 5 972 44565 13 0 1 315 1 0 520 0 3 115 chain 74394 chrX 155270560 + 72815989 72816891 L1PA7 6471 + 4585 5487 46317 724 12 11 29 0 1 137 chain 483569 chrX 155270560 + 72817474 72827783 L1PA7 6471 - 17 6471 7606 594 0 32 91 3931 0 37 0 2 66 0 1 4 4 5 323 0 1 150 1 0 128 0 3 211 0 8 73 0 1 44 0 4 679 4 1 255 6 1 192 0 4 47 1 0 26 0 2 381 6 12 355 0 1 86 8 9 50 0 6 699 3 2 22 0 12 299 0 1 258 0 2 57 5 9 350 237 0 13 0 237 206 2 0 33 8 7 5 0 1 94 18 14 136 0 1 111 chain 225657 chrX 155270560 + 72818166 72820626 L1PA2 6032 - 0 2460 17549 2460 chain 124437 chrX 155270560 + 72820626 72822084 L1PA2 6032 + 2097 3547 29535 101 2 0 889 1 0 44 3 0 5 12 15 145 8 3 87 2 1 5 0 1 154 chain 110372 chrX 155270560 + 72830856 72832084 L1PA4 6152 - 0 1229 34099 153 1 2 1074 chain 314950 chrX 155270560 + 72839554 72843402 L1PA7 6471 - 10 3889 12809 9 0 1 301 0 2 444 0 2 83 1 4 64 7 8 352 0 1 386 0 2 180 0 1 64 0 1 726 0 2 212 0 3 20 10 15 478 0 4 372 3 4 78 0 1 43 0 1 15 chain 9507 chrX 155270560 + 72845861 72846000 MER41B 635 - 0 144 163037 65 16 21 58 chain 133925 chrX 155270560 + 72861354 72862832 L1PA3long 6157 - 0 1476 27229 141 1 0 1038 1 0 297 chain 170989 chrX 155270560 + 72862839 72864949 L1P1 4361 - 2355 4360 21944 995 0 1 182 17 0 254 1 0 259 103 15 299 chain 5326 chrX 155270560 + 72864564 72864621 L1P1 4361 - 4061 4118 191760 57 chain 380582 chrX 155270560 + 72868112 72873168 L1PA8A 6298 + 1232 6290 10735 44 15 16 306 0 1 4 1 0 67 19 21 57 1 13 28 1 5 116 0 1 168 5 6 48 21 20 217 0 2 76 0 4 44 5 7 45 1 4 413 0 4 62 1 0 76 0 3 250 1 0 6 0 1 25 0 1 25 4 8 272 11 0 144 0 3 26 0 1 271 0 1 37 59 19 95 5 4 336 9 0 346 0 4 139 1 0 7 0 1 4 1 0 333 0 4 12 1 0 8 12 16 64 1 0 157 0 1 213 8 9 54 8 13 270 chain 262442 chrX 155270560 + 72879222 72883257 HERVK22-int 3844 - 15 3844 15561 14 2 0 35 322 310 5 1 0 9 0 3 16 11 7 20 65 47 7 1 0 9 2 0 4 2 0 6 2 0 6 2 0 10 41 29 45 1 0 10 5 1 37 3 1 20 1 0 16 9 0 9 4 12 17 1 0 6 1 0 74 1 0 326 1 0 736 0 1 158 0 5 127 15 20 163 1 13 14 0 2 150 166 0 58 0 1 184 0 1 12 18 17 83 1 0 235 1 0 99 0 2 41 2 3 255 6 7 189 0 3 96 3 0 43 chain 9492 chrX 155270560 + 72881767 72881873 L1PA2 6032 + 5913 6019 163111 106 chain 30318 chrX 155270560 + 72886116 72886496 MLT2A1 477 - 92 477 83867 211 3 7 24 0 1 142 chain 128672 chrX 155270560 + 72886496 72888376 L1PA11 4918 - 3041 4912 28400 63 1 2 15 0 1 96 2 1 14 0 1 54 0 2 82 10 11 61 0 1 127 1 0 4 0 1 61 2 28 10 29 3 48 0 1 19 0 3 5 21 17 318 2 1 29 15 1 84 16 21 342 1 4 133 3 0 35 1 0 48 2 0 16 1 0 29 4 1 6 0 4 32 2 0 36 chain 533941 chrX 155270560 + 72891607 72897716 L1PA4 6152 - 1 6146 3714 152 1 2 139 3 4 548 2 6 429 1 17 65 0 2 1070 0 16 524 1 0 445 1 5 2151 1 0 114 12 6 450 chain 309755 chrX 155270560 + 72912630 72916548 L1PA7 6471 + 2437 6395 13003 138 0 2 194 0 4 69 0 3 6 3 0 92 0 1 470 0 1 432 9 13 100 4 0 32 14 8 63 11 16 176 2 3 225 0 1 67 0 1 15 0 1 8 6 5 61 0 1 24 0 8 12 0 2 139 0 1 263 7 8 12 0 2 195 0 1 287 0 4 15 0 7 172 0 4 293 1 0 301 chain 398266 chrX 155270560 + 72916548 72921081 L1PA3long 6157 + 1614 6157 10162 361 0 1 1239 6 5 46 0 3 869 8 13 163 0 1 618 0 1 1223 chain 33789 chrX 155270560 + 72921084 72921468 L1PA4 6152 + 5768 6152 77955 384 chain 467331 chrX 155270560 + 72921790 72927369 L1PA6 6164 + 516 6156 8138 43 9 8 126 1 2 390 0 12 49 0 11 289 1 0 171 0 4 206 0 2 80 0 6 104 0 1 172 2 0 21 0 4 117 10 4 506 0 2 153 0 1 187 0 1 118 1 0 209 0 11 162 0 5 5 1 0 664 0 4 946 0 4 448 0 3 247 1 2 140 chain 10442 chrX 155270560 + 72935523 72935653 L1PB4 2604 - 85 217 158523 31 0 2 99 chain 19933 chrX 155270560 + 72936919 72937199 THE1A 353 - 0 279 127353 111 0 1 6 1 0 99 28 27 35 chain 5510 chrX 155270560 + 72941649 72941716 L1PA11 4918 - 4372 4439 189944 67 chain 2978 chrX 155270560 + 72943473 72943516 L1PA8 5853 + 5510 5564 225479 19 1 12 23 chain 4035 chrX 155270560 + 72943517 72943561 L1PA8 5853 + 5564 5608 206844 44 chain 18508 chrX 155270560 + 72943564 72943806 L1PA8 5853 + 5609 5847 131475 73 1 0 6 1 0 52 2 1 19 2 1 86 chain 7523 chrX 155270560 + 72951383 72951515 L1PB4 2604 - 49 182 174021 4 0 1 44 15 21 6 6 0 57 chain 16997 chrX 155270560 + 72952900 72953146 L1PA8 5853 - 4 245 135603 89 1 0 19 2 1 39 10 8 14 8 7 64 chain 3084 chrX 155270560 + 72955402 72955436 L1P4 1494 - 346 380 223236 34 chain 20134 chrX 155270560 + 72959374 72959623 L1PA7 6471 - 1286 1535 126731 249 chain 108131 chrX 155270560 + 72959624 72960906 L1PA7 6471 + 5186 6467 34678 435 1 0 846 chain 22580 chrX 155270560 + 72962914 72963296 L1PA15 4387 - 59 431 117671 13 3 1 23 38 35 39 1 0 10 4 0 14 7 9 53 1 0 27 1 0 148 chain 39514 chrX 155270560 + 72964703 72965171 L1PA7 6471 - 5 470 70007 6 5 0 315 0 1 7 0 1 135 chain 5522 chrX 155270560 + 72978267 72978391 LTR43B 570 + 212 377 189821 62 1 41 15 33 34 13 chain 3180 chrX 155270560 + 72978525 72978560 MER50C 576 + 528 563 221357 35 chain 56198 chrX 155270560 + 72982236 72982964 L1PA10 4194 - 33 895 55021 11 1 0 33 4 1 206 2 1 199 0 2 79 0 1 93 0 136 100 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155270560 + 73028864 73029220 LTR7 482 - 9 482 120266 40 13 14 111 0 1 12 6 0 6 1 38 28 1 12 60 0 50 42 13 36 23 chain 23158 chrX 155270560 + 73090972 73091239 AluSp 311 - 35 300 114861 153 2 0 112 chain 41039 chrX 155270560 + 73100406 73100896 L1PA7 6471 - 479 971 67842 242 0 2 65 0 1 65 1 0 117 chain 40715 chrX 155270560 + 73100896 73101363 L1PA7 6471 + 6002 6467 68283 457 2 0 8 chain 99915 chrX 155270560 + 73101507 73102685 SVA_B 1603 + 0 1264 36807 22 9 29 18 18 5 782 0 41 27 0 38 302 chain 23508 chrX 155270560 + 73105005 73105283 AluYc 301 + 11 291 113087 103 0 2 175 chain 382497 chrX 155270560 + 73106974 73111137 L1PA2 6032 + 1873 6031 10680 325 1 0 1369 1 0 834 6 5 1620 2 0 5 chain 513602 chrX 155270560 + 73112068 73118671 L1PA7 6471 + 0 6461 5823 403 1 2 562 10 27 403 0 3 251 0 1 107 2 1 126 0 12 110 15 2 311 7 8 103 5 6 55 1 0 6 0 1 20 0 2 110 7 0 231 0 2 231 0 4 145 0 9 113 0 5 112 3 2 25 304 0 201 0 4 20 1 3 885 0 1 59 0 1 96 3 121 719 1 0 508 3 4 328 chain 10568 chrX 155270560 + 73132838 73133013 MER30 238 - 1 190 157964 73 29 47 10 4 0 59 chain 2697 chrX 155270560 + 73138094 73138127 MLT1E3 631 + 4 36 230258 25 1 0 7 chain 38126 chrX 155270560 + 73138158 73138620 LTR2 463 - 0 463 71946 88 14 15 360 chain 24470 chrX 155270560 + 73140216 73140516 AluSp 311 + 9 304 107703 23 5 0 272 chain 4833 chrX 155270560 + 73146377 73146447 L1MA8 2339 - 1535 1793 196988 58 0 188 12 chain 4081 chrX 155270560 + 73152725 73152810 MER96B 391 + 97 183 206184 20 22 24 38 1 0 4 chain 5431 chrX 155270560 + 73156647 73156719 MER2 342 + 132 203 190692 4 1 0 67 chain 24024 chrX 155270560 + 73197957 73198228 AluSp 311 + 4 275 110192 271 chain 30487 chrX 155270560 + 73217113 73217482 L1PA5 6144 + 5775 6144 83455 196 4 6 155 3 1 11 chain 88719 chrX 155270560 + 73224608 73225654 MER11C 1089 - 26 1089 40100 173 0 1 151 0 1 45 0 4 371 0 4 63 0 1 23 0 6 220 chain 58629 chrX 155270560 + 73244729 73245803 MER11C 1089 - 15 1089 53624 14 2 1 130 1 3 39 0 1 50 0 1 29 0 2 7 27 35 18 16 6 16 1 0 45 187 178 22 4 0 6 8 11 92 1 0 106 0 3 29 0 5 130 7 8 87 chain 54116 chrX 155270560 + 73250570 73251157 L1PA3long 6157 + 5570 6157 56284 587 chain 532564 chrX 155270560 + 73253778 73259910 L1PA5 6144 - 3 6139 3901 6 5 0 133 0 1 685 0 1 14 0 4 423 6 5 520 3 7 1087 5 0 552 1 3 537 1 0 449 5 6 296 0 5 684 1 0 126 1 0 444 4 18 10 14 0 120 chain 499238 chrX 155270560 + 73260445 73266810 L1PA7 6471 - 4 6471 6879 9 0 2 144 1 0 105 1 3 109 1 0 5 0 1 389 0 2 76 2 1 187 0 15 268 0 2 622 9 13 701 0 4 187 2 3 122 1 0 4 1 2 96 0 1 6 1 0 144 5 1 5 0 2 136 0 4 242 0 3 92 15 17 101 8 0 73 0 2 114 0 3 192 0 2 11 0 2 18 0 3 57 0 1 4 1 0 400 1 0 77 38 9 47 2 1 127 0 3 138 0 1 434 3 0 5 3 6 185 2 4 92 29 111 60 9 8 47 0 4 245 6 7 148 chain 106044 chrX 155270560 + 73288234 73291656 L1MA1 4479 - 289 2213 35243 18 53 42 23 2 0 30 5 4 101 29 217 17 2 0 23 1 0 171 0 1 24 2 7 124 2 0 125 4 0 12 1 0 34 1715 0 39 4 0 23 1 0 170 2 0 24 1 0 157 1 0 33 3 0 16 4 8 12 0 1 66 2 1 54 29 113 18 0 3 38 54 21 68 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35 0 51 106 0 1 34 188 40 163 0 1 4 186 8 37 1 0 636 chain 2589 chrX 155270560 + 73386452 73386484 SVA_D 2077 + 984 1084 86508 8 0 51 11 0 17 13 chain 4450 chrX 155270560 + 73386531 73386586 SVA_D 2077 + 1257 1312 86508 55 chain 10592 chrX 155270560 + 73386810 73386936 SVA_F 1814 + 1093 1219 157861 84 1 0 37 0 1 4 chain 7816 chrX 155270560 + 73387116 73387302 SVA_D 2077 + 989 1176 74039 47 0 2 55 1 0 83 chain 38095 chrX 155270560 + 73401853 73402327 LTR3A 482 + 0 482 71993 160 1 10 237 1 0 75 chain 17819 chrX 155270560 + 73409851 73410053 L1PA7 6471 + 6256 6459 133335 28 0 1 174 chain 4894 chrX 155270560 + 73418415 73418482 L1MC2 1988 + 1020 1086 196324 9 1 0 57 chain 11161 chrX 155270560 + 73440116 73440343 Tigger3a 397 + 142 396 155584 105 5 3 15 63 92 39 chain 26891 chrX 155270560 + 73469774 73470247 LTR21A 479 + 0 479 96664 52 24 35 61 24 23 75 9 10 23 1 0 66 0 1 31 0 3 6 24 18 15 1 0 7 0 4 20 10 5 24 chain 12866 chrX 155270560 + 73473739 73473923 LTR9B 643 + 461 643 148773 127 16 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16 22 12 295 0 1 32 42 17 77 0 5 149 1 0 100 4 1 428 0 1 79 9 8 368 1 0 203 1 2 241 0 4 97 0 1 188 0 14 149 1 0 6 3 0 176 16 13 288 5 0 14 3 0 17 1 0 13 20 15 5 2 0 52 326 0 18 2 1 42 1 0 16 1 0 4 2 0 10 9 0 17 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 74945 chrX 155270560 + 73866321 73869614 L1MA1 4479 - 339 2352 46040 33 2 0 10 0 1 13 6 5 123 13 9 13 0 1 73 1 0 13 2 0 20 1 0 71 1 0 16 1 0 4 30 28 126 0 1 61 2 0 131 2 0 64 13 8 51 2115 856 282 chain 130253 chrX 155270560 + 73873252 73875568 L1PA11 4918 - 562 2233 28031 28 6 0 53 1 0 138 1 0 406 0 1 119 1 0 33 328 3 33 2 1 113 0 1 81 313 0 428 2 1 62 9 16 129 5 0 25 chain 11444 chrX 155270560 + 73875592 73875964 L1PA10 4194 - 3714 4019 154521 77 1 0 6 8 2 15 17 0 9 15 18 16 2 0 24 1 0 5 50 24 13 3 1 20 1 0 9 44 35 6 3 0 13 2 0 12 chain 65828 chrX 155270560 + 73879789 73880521 L1PA3long 6157 - 1123 1853 50176 8 1 0 537 1 0 185 chain 104139 chrX 155270560 + 73880521 73881655 L1PA3long 6157 + 5023 6157 35709 1134 chain 178659 chrX 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6 1 0 12 0 2 14 8 0 26 1 0 48 42 0 15 2 0 33 0 1 79 1 0 28 1 0 61 0 3 59 0 4 275 chain 85775 chrX 155270560 + 73979341 73980671 L1PREC2 3366 - 296 1585 41235 7 1 0 4 1 0 11 2 0 38 63 47 11 8 5 19 76 61 14 11 7 39 13 11 42 2 0 7 1 0 544 0 3 193 2 3 115 0 1 36 0 1 70 chain 287611 chrX 155270560 + 73981807 73985578 L1PA5 6144 - 5 4321 14183 69 5 7 26 3 0 175 0 3 565 2 0 909 1 0 119 0 1 806 34 583 30 154 151 314 21 19 162 0 1 376 chain 549446 chrX 155270560 + 74008817 74014835 L1PA2 6032 - 7 6030 1524 13 1 0 130 0 1 26 0 2 2708 0 4 76 5 4 2804 1 0 184 0 1 70 chain 76036 chrX 155270560 + 74037704 74038797 L1PA15 4387 + 2934 4022 45458 29 29 30 42 2 1 132 28 4 9 0 4 110 0 3 35 0 1 4 16 15 215 0 13 232 6 8 69 2 0 43 1 0 89 chain 47239 chrX 155270560 + 74038798 74039331 L1PA6 6164 + 4783 5315 61010 385 1 0 147 chain 70084 chrX 155270560 + 74039332 74040165 L1PA6 6164 + 5315 6149 48358 696 9 10 128 chain 118847 chrX 155270560 + 74049250 74050901 L1MA2 4263 - 208 1861 31475 90 2 1 6 1 0 152 15 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74177839 L1PA3long 6157 + 175 4756 9780 648 3 4 322 0 2 1003 0 1 1958 0 1 642 chain 210762 chrX 155270560 + 74179873 74182303 L1PA5 6144 + 3699 6132 18452 1593 1 2 173 0 1 525 3 0 6 0 4 129 chain 276022 chrX 155270560 + 74190022 74193112 L1PA3long 6157 - 0 3094 14870 2864 0 1 32 0 3 194 chain 6600 chrX 155270560 + 74193739 74193884 L1PA15 4387 + 4222 4357 180458 40 14 11 27 18 16 17 5 0 24 chain 66150 chrX 155270560 + 74195010 74196382 L1PB1 5432 - 10 1011 50024 18 1 0 12 1 0 23 1 0 14 38 33 25 13 1 16 2 1 42 307 0 16 2 1 52 18 12 12 9 6 23 15 0 15 15 0 439 2 1 31 9 6 188 0 1 13 chain 6250 chrX 155270560 + 74202072 74202139 L1PA2 6032 + 5965 6032 183166 67 chain 36275 chrX 155270560 + 74204534 74208032 L1PA6 6164 - 2 2740 9358 331 1 0 570 0 1 27 1 0 554 0 1 629 745 0 519 15 0 106 chain 60127 chrX 155270560 + 74206651 74207392 LTR17 781 - 0 781 52757 329 17 58 67 1 0 327 chain 141672 chrX 155270560 + 74210797 74212312 L1HS 6032 + 4514 6029 25871 1515 chain 524144 chrX 155270560 + 74213868 74220003 L1PA4 6152 - 1 6140 4753 142 1 0 197 17 16 774 0 1 1342 0 1 420 0 2 52 1 2 515 0 1 421 1 22 798 0 1 210 0 2 48 0 1 213 0 1 134 32 15 244 2 1 71 0 1 348 9 0 143 chain 31902 chrX 155270560 + 74235474 74235892 L1PA10 4194 - 33 446 81008 11 1 0 34 3 0 30 5 4 334 chain 21902 chrX 155270560 + 74236988 74237353 THE1B 368 - 12 368 120610 63 7 6 83 3 2 9 24 18 6 1 0 43 8 6 6 0 3 63 0 1 33 2 0 14 chain 160613 chrX 155270560 + 74240770 74242661 L1PA6 6164 - 2 1895 23250 137 17 17 177 1 0 511 0 5 7 9 5 933 0 2 99 chain 32282 chrX 155270560 + 74242665 74245778 L1PA6 6164 - 3036 6164 9358 244 1 4 33 0 1 508 8 4 178 0 6 290 0 4 557 0 1 71 3 4 130 0 3 426 0 3 64 3 1 131 6 5 460 chain 442432 chrX 155270560 + 74251083 74257005 L1PA7 6471 - 7 6471 8984 164 1 2 23 0 1 135 0 1 476 0 2 31 9 11 646 1 2 247 0 2 82 0 1 435 1 0 323 404 0 273 0 1 53 0 4 18 1 2 70 0 2 7 6 11 39 3 0 246 0 1 108 0 1 396 8 7 639 0 3 3 0 2 70 16 17 8 0 3 497 1 4 389 0 913 93 chain 7902 chrX 155270560 + 74262914 74263003 L1PA4 6152 + 4564 4653 171636 89 chain 60897 chrX 155270560 + 74263014 74263707 L1PA4 6152 + 4659 5353 52388 649 0 1 44 chain 68950 chrX 155270560 + 74263707 74264490 L1PA4 6152 + 5354 6136 48835 464 2 1 317 chain 25612 chrX 155270560 + 74294098 74294535 L1PA15 4387 + 3925 4356 101667 7 1 0 158 0 3 11 1 0 27 1 0 36 15 11 7 1 0 16 5 1 15 1 0 30 21 29 38 3 1 12 3 1 28 chain 39138 chrX 155270560 + 74336498 74337043 MER41A 554 + 0 554 70558 172 3 1 30 1 0 138 26 16 22 0 22 153 chain 78840 chrX 155270560 + 74340467 74341860 MER41-int 2638 + 1546 2636 44129 122 1 0 250 318 9 100 2 1 63 6 7 20 0 2 16 14 8 69 0 1 11 3 5 122 0 3 40 0 5 236 chain 30951 chrX 155270560 + 74341869 74342252 MER41A 554 + 0 383 82599 383 chain 270121 chrX 155270560 + 74346164 74349428 L1PA7 6471 + 3232 6457 15178 259 10 6 32 0 1 871 1 0 224 38 0 322 1 2 4 1 0 553 0 5 110 2 0 836 chain 35139 chrX 155270560 + 74362971 74363404 THE1B-int 1605 - 1173 1605 76009 243 1 0 189 chain 95207 chrX 155270560 + 74364864 74366362 L1PA13 3608 + 2161 3548 38031 132 0 3 49 0 3 20 0 2 51 0 1 338 8 0 37 8 9 239 75 0 42 11 12 30 5 4 27 3 0 113 6 4 52 13 6 51 1 0 7 5 3 48 10 6 15 1 0 18 29 21 14 1 0 6 7 1 12 3 0 11 chain 24073 chrX 155270560 + 74388355 74388652 AluSp 311 - 10 300 109909 11 6 0 27 1 0 252 chain 77340 chrX 155270560 + 74388668 74389870 L1PB1 5432 - 41 3722 44810 21 5 4 20 2 0 5 77 60 45 1 0 15 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 23 5 0 8 2 5 212 0 11 73 4 2 67 0 2497 117 0 1 265 7 11 136 chain 136308 chrX 155270560 + 74392371 74393997 LTR12C 1709 - 0 1709 26781 104 0 1 5 2 1 303 0 1 66 0 4 107 2 0 6 1 0 193 0 81 837 chain 257698 chrX 155270560 + 74394999 74398189 HERV9-int 5642 - 2608 5642 15830 4 1 0 644 0 10 1266 1 0 3 163 0 194 4 0 116 1 0 631 0 4 162 chain 5837 chrX 155270560 + 74396922 74397000 HERV9-int 5642 - 4536 4614 186800 62 3 0 8 0 3 5 chain 7054 chrX 155270560 + 74397001 74397080 HERV9-int 5642 - 4535 4614 177077 79 chain 132564 chrX 155270560 + 74398288 74399917 LTR12C 1709 - 0 1709 27509 104 0 1 5 2 1 370 0 4 107 2 0 6 1 0 34 1 0 80 0 41 40 8 49 30 1 0 236 0 3 45 4 0 553 chain 499766 chrX 155270560 + 74402855 74408868 L1PA5 6144 - 0 6141 6851 9 4 0 1513 1 0 250 0 1 26 0 4 3332 1 0 36 4 5 77 7 135 47 15 8 131 1 0 409 6 28 10 27 13 107 chain 250237 chrX 155270560 + 74408879 74411933 L1P1 4361 - 1280 4357 16234 18 15 15 740 3 7 120 6 7 997 9 10 136 1 0 199 0 1 179 7 21 341 0 3 283 chain 9027 chrX 155270560 + 74419580 74419689 L1PA7 6471 - 1 110 165454 109 chain 7726 chrX 155270560 + 74422548 74422643 U6 107 + 11 106 172737 95 chain 53400 chrX 155270560 + 74422644 74423282 L1PA10 4194 + 1440 2083 56759 142 0 3 122 0 2 374 chain 20732 chrX 155270560 + 74423739 74424039 LTR46-int 301 - 2 293 124850 38 9 1 105 2 4 103 17 14 26 chain 29780 chrX 155270560 + 74424923 74425248 AluYb8 318 + 0 318 85542 242 7 0 76 chain 38312 chrX 155270560 + 74437066 74437490 L1PA3long 6157 - 1426 1850 71695 424 chain 128135 chrX 155270560 + 74437490 74438883 L1PA3long 6157 + 4764 6157 28539 1393 chain 530876 chrX 155270560 + 74451772 74457793 L1PA3long 6157 + 10 6157 4100 141 14 15 401 0 4 210 0 128 981 0 1 1400 0 1 92 1 0 331 10 0 1370 0 1 598 0 1 472 chain 70848 chrX 155270560 + 74465950 74466739 L1PA5 6144 - 9 800 47990 610 0 2 179 chain 525434 chrX 155270560 + 74466972 74473036 L1PA4 6152 + 44 6151 4637 197 2 1 243 0 3 87 0 4 322 0 9 241 0 5 910 1 2 252 7 6 2307 1 2 614 0 21 821 0 1 59 chain 29422 chrX 155270560 + 74474596 74474909 AluYb8 318 - 5 318 86978 313 chain 372933 chrX 155270560 + 74477627 74487421 L1PA5 6144 + 1 6144 10996 134 17 31 53 438 208 36 19 0 51 158 61 9 0 12 32 34 38 86 32 11 48 0 17 125 39 14 173 38 29 52 3 16 62 148 149 102 0 2 122 0 4 31 1 0 44 1 0 310 0 2 168 0 1 14 0 2 63 2 1 266 8 7 4 0 1 578 1 0 18 0 87 220 8 0 10 15 19 154 1 0 15 0 2 174 3971 554 843 22 24 4 0 1 485 1 13 351 chain 96113 chrX 155270560 + 74481744 74482979 L1P2 5180 + 1617 2832 37740 391 0 1 311 28 7 505 chain 237394 chrX 155270560 + 74482989 74485715 L1P1 4361 - 653 3421 16903 32 1 0 396 0 2 577 5 0 451 0 34 206 4 13 128 0 1 831 0 2 95 chain 263956 chrX 155270560 + 74487434 74490749 L1PA7 6471 + 3146 6467 15487 338 14 13 47 1 5 1122 0 4 270 4 5 639 8 9 23 1 0 510 1 0 163 25 26 141 2 0 6 chain 114006 chrX 155270560 + 74490764 74492557 L1PB1 5432 + 3727 5420 33094 59 0 1 59 0 1 133 23 40 116 11 12 16 0 4 441 11 12 180 1 0 78 0 11 4 0 1 187 137 34 22 1 0 9 1 0 6 9 5 9 2 0 53 2 1 16 1 0 18 1 0 26 1 0 12 17 4 30 3 1 4 1 0 14 3 1 22 2 1 21 1 0 13 1 0 16 chain 13294 chrX 155270560 + 74499499 74499853 L1PB1 5432 - 8 327 147114 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 48 34 38 1 0 16 2 1 40 13 11 11 24 20 4 1 0 17 3 0 12 chain 289335 chrX 155270560 + 74501560 74505536 L1PBa1 4058 - 18 3951 14064 42 1 0 17 1 0 8 25 20 12 43 37 9 2 0 15 8 0 14 1 0 11 10 8 63 2 1 42 2 0 40 2 1 28 1 0 7 1 0 28 0 5 72 1 3 11 4 0 111 1 0 106 12 0 85 0 1 426 1 0 6 1 2 11 0 1 4 1 0 313 43 37 138 5 9 74 26 14 16 8 15 51 0 4 460 1 0 59 1 2 493 3 0 486 1 0 21 33 40 129 3 1 324 chain 408918 chrX 155270560 + 74527682 74533116 L1PA8 5853 - 3 5116 9833 89 2 1 13 1 0 54 10 9 76 2 0 44 0 6 201 0 1 6 0 1 21 0 1 316 1 3 125 10 1 534 0 5 209 0 1 746 1 0 168 2 0 124 2 1 103 1 0 50 3 7 44 0 2 343 290 0 50 1 0 7 1 0 4 0 1 102 0 2 98 0 1 262 1 0 460 0 1 176 3 5 62 39 0 20 1 2 4 1 0 142 1 0 253 7 8 148 chain 528915 chrX 155270560 + 74533364 74539492 L1PA4 6152 - 0 6152 4313 6 0 7 834 0 5 162 19 20 762 0 2 1185 1 0 4 0 1 1288 0 1 314 0 2 326 3 2 794 0 6 143 0 1 287 chain 41531 chrX 155270560 + 74543028 74543538 MER9a3 513 + 0 513 67244 17 0 2 160 0 1 78 1 0 175 1 2 78 chain 171325 chrX 155270560 + 74544121 74549194 HERVK9-int 4720 + 145 4720 21902 17 2 1 721 0 1726 41 2935 707 193 3 4 888 8 11 40 0 1 225 chain 38885 chrX 155270560 + 74549195 74549696 MER9a3 513 + 1 513 70888 12 0 2 69 16 17 78 0 1 76 1 0 56 0 7 114 5 6 74 chain 152869 chrX 155270560 + 74553763 74556179 SVA_A 1864 - 1 1849 24246 695 3 0 23 80 0 120 76 0 42 294 0 60 34 0 29 39 0 8 1 0 114 3 0 6 9 11 19 3 0 74 3 0 614 44 10 23 chain 3372 chrX 155270560 + 74554484 74554564 SVA_A 1864 - 829 867 68003 14 43 1 23 chain 3337 chrX 155270560 + 74554684 74554760 SVA_A 1864 - 765 802 57894 22 39 0 15 chain 1644 chrX 155270560 + 74554706 74554745 SVA_A 1864 - 1008 1045 68003 14 6 4 19 chain 10200 chrX 155270560 + 74554809 74555051 SVA_A 1864 - 1111 1246 68003 31 71 0 18 37 1 85 chain 2006 chrX 155270560 + 74554929 74554961 SVA_A 1864 - 1387 1419 142157 32 chain 2146 chrX 155270560 + 74555156 74555190 SVA_A 1864 - 977 1014 79392 28 3 6 3 chain 1644 chrX 155270560 + 74555219 74555258 SVA_A 1864 - 1267 1306 68003 39 chain 47735 chrX 155270560 + 74564016 74564631 L1PA8 5853 - 0 626 60666 92 2 1 19 2 1 40 1 0 21 2 1 70 2 0 44 1 0 38 0 18 281 chain 9770 chrX 155270560 + 74566187 74566301 L1PA13 3608 - 2245 2359 161746 114 chain 24000 chrX 155270560 + 74566302 74566656 THE1B 368 + 0 368 110331 13 2 0 24 0 5 57 7 11 59 8 7 130 8 16 46 chain 278249 chrX 155270560 + 74568293 74571676 L1PA7 6471 - 6 3412 14740 6 3 0 603 0 1 234 1 5 602 0 1 34 1 0 216 0 1 73 0 1 17 0 8 106 1 0 4 1 2 844 1 0 101 0 4 48 1 5 449 10 14 27 chain 17637 chrX 155270560 + 74574745 74575009 L1M1 2793 - 1545 1811 133888 66 1 0 115 16 20 44 1 0 21 chain 127470 chrX 155270560 + 74584384 74586466 MER41-int 2638 + 371 2632 28700 84 0 4 98 0 2 121 1 0 32 1 0 15 0 2 74 1 0 6 237 403 85 4 7 18 1 0 1 1 0 48 8 10 41 0 3 120 0 2 33 5 8 82 1 0 215 0 2 28 5 2 6 0 2 29 58 41 100 1 0 92 3 4 35 0 2 138 0 1 26 0 4 5 1 0 42 1 9 179 chain 25981 chrX 155270560 + 74593916 74594229 L1PA7 6471 + 6160 6467 100090 202 5 1 96 2 0 8 chain 91878 chrX 155270560 + 74612349 74613562 HERVL-int 5654 - 10 5654 39005 266 2 1 152 6 0 358 0 4437 250 0 1 179 chain 29125 chrX 155270560 + 74613562 74614001 MLT2A1 477 - 0 477 88439 37 6 3 8 0 46 17 6 11 10 0 1 136 3 4 24 0 1 8 3 0 67 2 0 71 8 0 33 chain 227903 chrX 155270560 + 74620624 74624269 L1PA14 3548 + 90 3456 17427 58 3 0 69 1 0 6 47 45 31 2 0 6 204 0 7 58 0 325 0 2 79 1 0 86 0 2 247 0 1 5 8 7 203 11 10 115 1 0 102 1 0 4 1 2 60 0 1 55 0 3 57 0 4 109 15 16 36 0 1 4 0 3 71 0 2 47 20 10 216 1 0 5 1 2 36 1 10 665 4 6 13 9 7 12 2 0 48 8 4 105 2 0 5 20 16 6 1 0 61 24 23 95 34 29 34 4 2 12 1 0 5 5 4 11 1 0 43 chain 99187 chrX 155270560 + 74626813 74628061 SVA_B 1603 + 316 1603 36976 134 0 116 52 0 37 223 109 0 43 4 0 55 1 0 627 chain 19418 chrX 155270560 + 74629357 74629583 AluY 311 + 8 236 128897 123 0 2 103 chain 115856 chrX 155270560 + 74638392 74640796 L1PA7 6471 + 5051 6469 32511 127 0 9 428 996 0 6 2 0 516 1 2 234 1 3 93 chain 86718 chrX 155270560 + 74638971 74639936 L1PA4 6152 + 5177 6143 40873 263 0 1 702 chain 19427 chrX 155270560 + 74642643 74642855 L1PA3long 6157 - 1 213 128881 212 chain 3292 chrX 155270560 + 74650258 74650368 L1MC3 1789 + 1288 1386 219138 23 54 43 23 1 0 9 chain 10710 chrX 155270560 + 74653137 74653491 L1PB1 5432 - 10 309 157368 18 1 0 12 1 0 22 1 0 19 59 46 9 3 0 8 10 9 43 24 22 45 3 1 9 52 21 15 chain 53794 chrX 155270560 + 74657124 74657709 L1PA3long 6157 - 1 586 56479 585 chain 30256 chrX 155270560 + 74657725 74658056 L1PA3long 6157 + 5258 5589 84040 331 chain 178241 chrX 155270560 + 74662098 74664463 L1PA5 6144 + 4092 6144 21142 249 0 4 151 0 1 32 315 0 99 0 1 140 5 0 341 0 1 1033 chain 354541 chrX 155270560 + 74671662 74676346 L1PA6 6164 + 1944 6161 11486 246 0 1 134 8 0 210 0 1 228 0 3 137 0 4 117 1 0 164 0 1 33 1 0 25 9 1 21 0 3 322 0 3 105 1 0 92 0 1 42 1 0 494 0 1 35 0 4 47 483 0 766 0 1 106 0 4 92 0 1 98 1 11 658 2 0 5 chain 30407 chrX 155270560 + 74674149 74674501 L1PA6 6164 - 378 730 83672 352 chain 8846 chrX 155270560 + 74674502 74674610 L1PA5 6144 + 6036 6144 166396 108 chain 321739 chrX 155270560 + 74680599 74686208 L1PA11 4918 + 3 4578 12531 36 9 7 34 1 0 4 3 1 8 0 2 19 1 0 13 3 1 52 1 0 33 2 0 5 2 1 233 0 4 14 26 28 241 0 1 8 5 7 101 0 1 32 22 23 360 0 1 195 0 5 340 0 1 23 0 1 357 2 1 12 2 0 19 0 5 8 0 4 85 0 1 57 0 1 37 8 16 269 1057 0 102 10 11 19 6 7 94 0 5 130 1 2 476 1 0 175 19 27 111 12 13 152 1 0 150 6 11 104 5 0 14 5 9 6 5 0 61 11 8 9 2 1 28 4 8 31 2 0 14 1 0 18 3 0 10 30 23 15 1 0 13 2 0 11 chain 82440 chrX 155270560 + 74683287 74684280 L1PA5 6144 + 5155 6144 42567 120 38 27 188 0 7 647 chain 5757 chrX 155270560 + 74686323 74686391 THE1D 372 + 249 317 187578 68 chain 287343 chrX 155270560 + 74690244 74693884 HERVL-int 5654 + 219 5654 14198 68 0 1563 55 0 2 63 0 3 102 6 1 219 1 4 133 5 10 446 6 7 561 0 1 49 0 4 714 1 0 93 11 12 81 13 16 116 0 10 72 0 1 275 0 3 182 1 196 138 1 5 110 0 1 112 0 1 6 chain 30435 chrX 155270560 + 74693884 74694283 MLT2A1 477 + 0 399 83569 168 1 5 212 4 0 14 chain 13203 chrX 155270560 + 74699546 74699708 L1PB4 2604 - 56 218 147454 162 chain 518283 chrX 155270560 + 74708455 74715756 L1PA4 6152 + 10 6131 5348 49 8 9 185 4 1 172 0 7 806 1 2 199 1 0 8 0 1 392 1201 0 508 0 11 811 2 1 127 1 0 4 0 1 272 0 1 1077 4 5 219 14 14 407 0 3 829 chain 68889 chrX 155270560 + 74710701 74711470 L1PA3long 6157 + 5387 6157 48860 627 0 1 142 chain 77773 chrX 155270560 + 74727994 74728882 L1PA5 6144 - 12 899 44628 241 2 0 417 1 2 227 chain 21444 chrX 155270560 + 74728882 74729120 L1PA5 6144 + 5010 5248 122029 238 chain 4513 chrX 155270560 + 74729132 74729286 MER33 330 - 153 313 200635 29 83 89 42 chain 99103 chrX 155270560 + 74730423 74731496 L1PA2 6032 - 13 1086 36998 1073 chain 147822 chrX 155270560 + 74731496 74733078 L1PA2 6032 + 3390 4973 24899 1470 0 1 112 chain 5049 chrX 155270560 + 74734659 74734713 L1PA4 6152 + 3238 3292 194643 54 chain 53565 chrX 155270560 + 74734714 74735359 L1PA4 6152 + 3292 3930 56635 396 9 0 43 0 1 193 0 1 4 chain 193129 chrX 155270560 + 74735360 74737582 L1PA4 6152 + 3930 6151 19758 729 1 0 1492 chain 10395 chrX 155270560 + 74748857 74749153 L1PB3 3668 - 48 294 158719 7 1 0 10 11 8 13 1 0 13 7 3 32 8 6 9 0 1 4 2 1 10 1 0 8 1 0 13 64 28 63 1 0 17 chain 13207 chrX 155270560 + 74754199 74754454 L1PB1 5432 - 10 243 147432 18 1 0 12 5 4 18 1 0 24 1 0 14 1 0 9 2 0 10 10 1 16 3 0 15 7 6 39 1 0 14 1 0 33 chain 58682 chrX 155270560 + 74756137 74756807 L1PA4 6152 - 4 675 53590 102 7 8 561 chain 96746 chrX 155270560 + 74757642 74760607 L1PA3long 6157 - 5 1302 37635 596 1873 206 287 1 0 208 chain 73679 chrX 155270560 + 74760607 74761416 L1PA3long 6157 + 5348 6157 46352 809 chain 202889 chrX 155270560 + 74769489 74771975 L1PA7 6471 + 3978 6470 19004 338 2 1 257 0 1 18 0 1 178 0 3 30 7 3 139 3 0 269 4 13 205 0 3 110 0 1 73 1 0 18 0 1 496 0 1 44 0 1 115 20 19 115 1 0 33 4 0 6 chain 547567 chrX 155270560 + 74774994 74781013 L1PA2 6032 - 2 6032 1758 3081 0 1 868 0 2 490 0 1 626 0 3 390 0 4 564 chain 520032 chrX 155270560 + 74781106 74787138 L1PA3long 6157 - 0 6156 5159 5 2 0 144 0 1 878 0 1 1439 2 1 396 2 1 787 0 1 1599 9 137 193 2 1 418 6 7 140 3 0 7 chain 76234 chrX 155270560 + 74791812 74792686 MER11D 897 + 0 897 45347 587 0 23 287 chain 23229 chrX 155270560 + 74796582 74796837 L1PA2 6032 - 18 273 114548 255 chain 19423 chrX 155270560 + 74797077 74797324 L1MA1 4479 - 3995 4240 128888 201 8 6 38 chain 525779 chrX 155270560 + 74806363 74812347 L1PA3long 6157 + 5 6156 4605 130 11 30 308 0 4 290 9 137 52 0 4 752 0 1 1537 6 13 323 0 1 1717 0 4 140 1 0 708 chain 513135 chrX 155270560 + 74816350 74822458 L1PA4 6152 - 9 6144 5871 147 0 3 438 2 1 260 1 0 622 7 8 772 0 2 314 0 1 245 0 2 146 1 2 872 0 1 164 0 1 57 0 1 377 0 1 490 10 11 86 0 1 57 10 8 6 0 2 230 3 0 6 0 3 731 27 40 27 chain 147865 chrX 155270560 + 74832306 74834103 L1PA7 6471 - 43 1861 24893 50 0 10 21 0 2 12 0 1 16 7 8 234 0 1 456 0 3 281 1 0 661 0 4 58 chain 129725 chrX 155270560 + 74834105 74835769 L1PA7 6471 + 2935 4599 28146 53 0 1 97 3 4 163 6 9 75 2 1 55 1 0 136 2 1 19 0 4 94 3 0 357 7 4 308 2 1 68 0 1 213 chain 522170 chrX 155270560 + 74836234 74842364 L1PA4 6152 + 0 6143 4940 513 6 5 416 0 3 106 0 2 200 0 1 65 1 0 109 0 1 663 0 1 116 0 2 1311 1 3 165 0 3 597 0 1 1366 1 2 4 1 0 479 1 0 9 chain 229347 chrX 155270560 + 74845926 74849081 L1PB1 5432 - 12 3153 17332 13 4 3 13 1 0 21 1 0 23 3 1 14 8 5 17 9 0 14 2 0 17 2 1 41 1 0 12 6 5 51 2 0 11 23 11 10 1 0 16 0 5 301 4 3 104 0 1 72 10 7 196 7 8 208 0 10 122 0 1 347 0 1 178 0 1 277 0 1 135 1 9 292 1 0 110 0 1 135 1 0 9 0 5 52 0 1 28 25 18 204 chain 14992 chrX 155270560 + 74853672 74853859 HERVH-int 3825 - 0 188 141347 180 0 1 7 chain 28728 chrX 155270560 + 74857126 74857565 LTR7C 471 - 10 471 90217 15 2 0 5 0 1 35 9 8 93 1 21 76 0 4 6 12 8 23 0 3 54 18 19 90 chain 97616 chrX 155270560 + 74861182 74862455 L1PA8 5853 - 17 1284 37393 76 1 0 19 2 1 49 18 16 67 2 0 44 1 0 43 1 0 90 1 0 204 0 6 6 7 1 201 1 0 3 1 0 22 0 4 346 4 5 64 chain 33156 chrX 155270560 + 74862455 74862905 LTR2B 499 - 0 463 78977 57 1 0 309 0 13 45 0 4 6 17 14 15 chain 402428 chrX 155270560 + 74862930 74867999 Harlequin-int 5206 - 0 5078 10016 26 6 1 110 0 5 505 31 24 10 30 6 276 17 1 442 1 2 8 2 1 423 0 2 310 0 2 385 3 4 400 0 3 433 0 35 84 0 5 477 1 3 13 0 3 339 0 3 187 2 1 5 0 1 6 2 0 137 4 5 40 0 1 96 0 8 77 1 2 5 14 0 5 0 3 116 0 2 24 1 0 8 0 1 7 chain 32901 chrX 155270560 + 74868972 74869456 LTR2B 499 - 0 499 79366 54 1 0 312 0 1 5 15 27 35 12 14 22 16 17 12 chain 7730 chrX 155270560 + 74881762 74881977 L1PA16 3655 - 36 225 172713 16 104 78 95 chain 31488 chrX 155270560 + 74890397 74890746 L1PA4 6152 - 9 359 81661 330 0 1 19 chain 26147 chrX 155270560 + 74892476 74892799 L1PA7 6471 - 5 329 99415 147 1 2 175 chain 47515 chrX 155270560 + 74896305 74896833 L1PA2 6032 - 1079 1607 60830 528 chain 94361 chrX 155270560 + 74896836 74897867 L1PA2 6032 + 4998 6030 38243 765 0 1 266 chain 509464 chrX 155270560 + 74900372 74906367 L1PA4 6152 - 18 6146 6208 567 0 1 261 0 1 1620 0 2 217 1 0 179 2 1 123 0 2 262 0 131 1757 0 1 4 4 1 998 chain 338380 chrX 155270560 + 74910013 74913928 L1PA4 6152 - 12 3938 11947 658 0 4 176 0 4 722 0 2 1108 1 0 262 0 1 898 0 1 90 chain 17134 chrX 155270560 + 74918361 74918559 L1PA5 6144 + 5930 6128 135219 198 chain 100737 chrX 155270560 + 74920542 74921667 L1PA3long 6157 - 0 1125 36555 1125 chain 105052 chrX 155270560 + 74921667 74922853 L1PA3long 6157 + 3818 5011 35493 66 0 1 476 1 5 435 0 2 208 chain 77418 chrX 155270560 + 74926955 74927967 MER11A 1151 + 0 1151 44767 55 0 99 136 9 5 31 0 2 38 0 1 5 11 13 299 0 1 132 13 47 171 0 1 4 1 0 71 7 11 29 chain 78645 chrX 155270560 + 74929740 74930630 L1PA4 6152 - 9 900 44208 702 0 1 188 chain 20592 chrX 155270560 + 74930636 74930873 L1PA4 6152 + 5012 5249 125326 237 chain 469014 chrX 155270560 + 74934088 74944833 L1PA7 6471 - 14 6471 8071 98 51 52 411 0 2 91 0 1 102 0 2 73 1 5 551 4401 0 114 1 0 281 0 8 60 0 2 475 0 1 227 0 1 56 8 9 262 0 4 71 1 2 174 1 0 5 4 5 21 13 14 9 0 2 19 0 1 136 0 8 18 0 1 185 0 3 117 2 1 30 0 3 33 11 12 65 0 2 24 0 1 467 1 2 108 0 1 26 6 7 789 5 6 259 13 14 219 32 31 155 10 71 153 15 16 89 29 27 167 chain 348878 chrX 155270560 + 74935504 74939860 L1PA5 6144 - 16 6144 11642 89 0 3 46 0 1 507 1 0 188 1 0 642 1 2 710 5 6 59 1 2 76 10 1546 361 0 216 247 1 0 149 0 3 5 11 8 32 0 1 59 9 0 436 1 0 549 0 11 25 0 14 135 chain 21527 chrX 155270560 + 74970391 74970736 THE1B 368 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75053112 75057990 L1PA3long 6157 - 1 4894 9888 530 0 11 400 2 1 919 0 2 108 4 5 231 0 1 4 1 0 681 5 4 87 0 1 162 5 6 850 0 1 519 2 1 61 6 7 301 chain 131551 chrX 155270560 + 75063514 75065074 L1PA5 6144 - 42 1975 27736 211 1 0 210 0 2 566 7 381 80 1 0 24 1 0 459 chain 91180 chrX 155270560 + 75065081 75066132 L1PA5 6144 + 3088 4140 39238 644 0 1 407 chain 110083 chrX 155270560 + 75068538 75069982 THE1A-int 1579 - 5 1579 34193 252 1 0 198 0 1 62 11 130 256 24 33 16 18 19 189 1 2 416 chain 128080 chrX 155270560 + 75071932 75073550 L1PA7 6471 - 19 1631 28550 208 18 18 605 1 0 62 5 1 474 1 0 244 chain 444023 chrX 155270560 + 75073874 75083202 L1PA6 6164 - 2 6164 8928 839 7 4 14 0 1 472 1 2 359 0 3 234 3624 473 20 1 0 234 0 4 276 0 4 6 31 0 6 0 1 4 1 0 27 2 0 62 0 1 317 4 5 458 5 4 137 1 5 569 0 1 163 6 5 204 1 0 57 0 3 171 4 0 61 17 15 632 0 1 253 9 16 39 chain 27278 chrX 155270560 + 75075800 75076253 LTR7B 505 - 0 505 95345 106 0 1 37 9 50 35 3 58 17 1 0 6 78 24 56 0 10 105 chain 484596 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chain 82660 chrX 155270560 + 75156799 75157771 L1PA4 6152 + 5034 6006 42479 972 chain 9716 chrX 155270560 + 75157785 75157906 L1PA4 6152 + 6022 6143 162004 121 chain 68141 chrX 155270560 + 75162322 75166417 L1PB1 5432 - 65 3211 49185 21 2 0 11 11 8 11 33 16 4 1 0 15 1 0 44 2 1 15 2 1 18 0 1 34 2 0 9 16 11 11 1 0 18 4 1 10 2770 1851 60 0 1 18 10 11 158 11 1 172 1 0 211 23 30 100 1 3 46 11 14 47 68 70 62 5 6 25 chain 50202 chrX 155270560 + 75164702 75165360 L1PA8 5853 - 0 652 58867 93 1 0 19 2 1 58 1 0 74 2 0 48 1 0 45 3 1 174 0 1 87 10 11 40 chain 99168 chrX 155270560 + 75178619 75179752 L1P1 4361 + 2570 3704 36982 939 0 1 194 chain 140198 chrX 155270560 + 75181035 75182641 L1PA5 6144 - 9 1616 26114 195 0 1 1411 chain 32957 chrX 155270560 + 75183493 75183940 MER48 407 - 0 407 79283 273 41 1 133 chain 137720 chrX 155270560 + 75185851 75188386 HERVH48-int 3304 - 138 2508 26525 11 2 0 72 60 44 68 28 25 19 12 9 13 6 5 13 239 186 17 30 27 18 4 2 45 1 0 19 1 0 3 1 0 49 0 2 192 8 9 24 1 0 11 2 1 59 13 11 10 10 9 202 0 4 187 80 0 141 1 0 88 2 1 19 0 2 182 0 35 122 11 5 5 1 0 5 2 0 41 3 1 21 1 0 15 1 0 4 2 0 22 2 0 3 3 0 32 2 0 14 1 0 20 1 0 11 4 1 107 39 31 66 2 1 9 chain 28846 chrX 155270560 + 75189274 75189682 MER48 407 - 38 406 89683 227 50 10 131 chain 4007 chrX 155270560 + 75189859 75189907 L1PA7 6471 + 6220 6268 207280 48 chain 17931 chrX 155270560 + 75189912 75190109 L1PA7 6471 + 6268 6465 133030 197 chain 86394 chrX 155270560 + 75190123 75191079 L1PA3long 6157 + 5201 6157 41005 956 chain 3812 chrX 155270560 + 75191864 75191908 L1MB1 2102 + 148 192 210196 44 chain 4262 chrX 155270560 + 75191932 75191980 L1PA4 6152 + 6104 6152 203722 48 chain 17707 chrX 155270560 + 75193116 75193323 L1PA3long 6157 + 5944 6152 133686 65 0 1 142 chain 46574 chrX 155270560 + 75194156 75194746 L1PA8 5853 - 188 775 61545 55 2 0 46 1 0 486 chain 52915 chrX 155270560 + 75194758 75195411 L1PA8 5853 + 4408 5059 57074 601 2 0 50 chain 25142 chrX 155270560 + 75196361 75196845 L1PB1 5432 - 19 477 104052 9 1 0 13 1 0 22 1 0 18 0 5 14 11 8 16 22 12 15 1 0 44 1 0 16 2 1 41 1 2 10 2 0 6 19 14 9 1 0 24 15 11 106 3 2 40 chain 487437 chrX 155270560 + 75211461 75218097 L1PA6 6164 - 6 6164 7458 6 2 0 42 0 4 566 2 3 47 0 2 154 539 17 503 6 4 105 6 10 23 0 1 53 0 1 55 0 1 609 0 1 433 0 1 261 12 16 23 2 1 26 0 1 11 6 5 44 0 1 224 0 7 197 0 1 373 0 1 496 0 2 185 0 2 436 1 0 75 0 1 4 1 0 43 1 2 255 0 17 240 1 0 138 13 12 417 chain 46596 chrX 155270560 + 75212287 75212810 L1PA4 6152 - 9 531 61533 281 1 0 241 chain 436465 chrX 155270560 + 75222928 75227684 L1PA2 6032 - 0 6031 9153 800 1 2 1340 0 1273 616 0 1 1999 chain 73637 chrX 155270560 + 75230476 75231344 MER11D 897 + 3 897 46714 322 3 0 177 1 3 87 0 23 242 0 4 36 chain 168844 chrX 155270560 + 75239632 75241666 L1PA5 6144 + 4127 6129 22181 280 0 1 75 51 0 145 1 0 63 0 1 79 0 1 91 0 1 162 3 4 210 0 7 47 0 6 215 1 0 295 0 3 316 chain 6528 chrX 155270560 + 75244310 75244392 L1PA10 4194 - 3520 3602 181025 82 chain 443042 chrX 155270560 + 75253070 75259284 L1PA8 5853 - 4 5803 8952 81 1 0 7 1 0 20 2 1 132 2 0 43 2 1 385 0 2 110 310 0 57 6 0 8 6 0 329 1 0 163 1 0 175 1 0 108 1 0 199 0 15 209 74 5 16 0 1 476 2 1 84 1 0 259 23 26 82 0 3 222 5 4 296 5 12 294 1 2 132 0 2 363 1 0 93 1 2 768 5 6 19 0 3 325 18 6 67 0 1 36 0 1 25 6 5 4 0 1 54 67 30 7 2 0 21 chain 28594 chrX 155270560 + 75253863 75254166 AluYa5 310 - 8 310 90764 176 1 0 126 chain 530677 chrX 155270560 + 75266636 75272774 L1PA4 6152 - 5 6149 4117 1117 0 2 375 4 0 301 0 4 469 0 1 281 15 0 8 7 22 316 0 1 520 0 1 42 2 1 1251 0 1 423 0 1 1007 chain 22239 chrX 155270560 + 75273911 75274224 L1PREC2 3366 - 580 889 119172 34 2 0 12 1 0 22 1 2 234 2 0 5 chain 16095 chrX 155270560 + 75276743 75276962 L1PA8 5853 - 0 215 138075 93 1 0 19 2 1 52 1 0 9 2 1 40 chain 98358 chrX 155270560 + 75277101 75278187 L1PA2 6032 - 0 1088 37208 775 1 2 280 0 1 30 chain 91907 chrX 155270560 + 75278187 75279198 L1PA2 6032 + 3935 4946 38970 1011 chain 530410 chrX 155270560 + 75288639 75294662 L1PA3long 6157 + 0 6157 4138 152 14 15 605 10 138 536 1 0 593 2 1 5 0 1 650 0 1 1660 0 4 427 0 1 1368 chain 23585 chrX 155270560 + 75302044 75302350 L1PA7 6471 + 6165 6470 112662 148 0 1 130 0 2 12 2 0 7 2 0 5 chain 204777 chrX 155270560 + 75303738 75306371 L1PA7 6471 - 6 3039 18871 6 2 0 393 1 16 158 3 386 102 0 1 79 11 12 9 0 1 8 3 10 337 2 0 296 8 0 173 0 1 645 9 4 159 4 5 14 0 1 42 0 1 41 12 16 109 0 1 7 chain 47197 chrX 155270560 + 75307161 75307824 HSMAR1 1287 + 626 1285 61050 115 2 0 5 0 1 97 6 1 62 29 28 259 1 0 47 0 4 40 chain 481576 chrX 155270560 + 75309101 75316138 L1PA7 6471 - 16 6470 7669 241 0 1 509 4 7 34 1 5 37 2 1 428 0 1 776 3 5 333 5 6 59 11 12 102 2 10 155 0 2 55 0 78 41 4 8 114 2 1 169 0 1 476 687 0 89 5 0 320 0 2 11 6 8 97 1 0 61 0 1 422 0 4 5 4 0 319 4 0 41 16 19 84 16 15 9 1 0 6 0 2 67 23 23 192 1 2 86 1 5 8 5 1 26 1 0 459 3 4 98 11 12 289 chain 29881 chrX 155270560 + 75312786 75313098 AluYb8 318 - 6 318 85159 312 chain 12399 chrX 155270560 + 75319007 75319142 L1PA2 6032 - 2 137 150639 135 chain 6814 chrX 155270560 + 75319142 75319218 L1PA2 6032 + 5701 5777 178844 76 chain 12675 chrX 155270560 + 75329280 75329427 L1PA6 6164 - 4 151 149554 147 chain 163786 chrX 155270560 + 75332206 75334006 L1PA3long 6157 - 0 1800 22835 1800 chain 24694 chrX 155270560 + 75334153 75334490 L1PA8 5853 - 0 330 106467 93 1 0 16 1 0 55 1 0 10 1 0 71 2 0 44 7 6 35 chain 258760 chrX 155270560 + 75347657 75353171 L1PA11 4918 + 8 4567 15761 7 1 0 27 2 0 28 8 9 36 1 0 13 2 0 53 1 0 32 6 3 244 1 0 295 0 5 282 2 1 191 0 52 95 1 0 5 6 8 421 8 5 113 0 11 286 0 5 61 0 2 118 14 12 130 3 4 45 1878 857 21 0 3 52 1 2 157 15 14 191 0 4 9 1 0 5 5 6 396 1 0 7 0 7 42 0 5 8 16 14 48 0 5 14 2 0 13 4 3 16 3 0 11 8 3 10 13 9 14 2 1 13 chain 41810 chrX 155270560 + 75364059 75364578 MER41C 542 - 0 542 66880 207 0 1 4 0 21 259 0 1 49 chain 31931 chrX 155270560 + 75366478 75366840 L1PA3long 6157 - 27 380 80967 39 2 0 88 7 0 226 chain 43823 chrX 155270560 + 75367092 75367783 PABL_B 668 - 0 668 64423 87 78 41 190 1 0 28 0 1 6 1 0 28 7 6 44 1 0 42 0 3 27 5 6 81 0 9 45 0 4 20 chain 41810 chrX 155270560 + 75370200 75370719 MER41C 542 + 0 542 66879 49 0 1 259 0 21 4 0 1 207 chain 103616 chrX 155270560 + 75374099 75375452 L1PA8 5853 + 4536 5853 35825 80 41 7 386 0 2 121 0 1 431 1 0 45 2 0 70 1 0 61 2 1 16 4 3 41 5 6 46 chain 506038 chrX 155270560 + 75378861 75385313 L1PA7 6471 + 0 6457 6462 240 4 14 149 0 4 240 4 5 4 1 0 53 8 4 39 1 0 263 13 18 222 15 0 7 7 22 271 0 1 199 9 0 7 0 13 256 1 0 5 5 2 493 6 2 104 2 1 367 0 1 410 0 1 37 5 8 74 8 12 58 0 1 211 12 20 293 6 5 528 9 7 520 0 1 120 5 6 300 3 0 5 19 0 834 chain 325924 chrX 155270560 + 75399450 75403565 L1P3 4156 - 17 4156 12348 24 2 1 7 2 0 101 1 0 169 6 4 249 0 5 60 0 1 108 0 1 349 0 1 197 0 2 79 0 1 145 5 6 111 0 2 69 1 0 286 0 4 1082 0 1 110 0 3 53 0 2 344 10 11 207 0 1 23 2 1 58 6 11 53 10 11 186 chain 44403 chrX 155270560 + 75410893 75411386 L1PA4 6152 + 5658 6151 63689 493 chain 240971 chrX 155270560 + 75417487 75421042 L1PB1 5432 - 27 3529 16727 14 1 0 21 1 0 24 2 0 14 12 9 15 11 4 9 4 0 14 1 0 19 2 3 9 16 15 14 2 1 53 17 11 10 1 0 9 1 0 23 42 20 279 3 4 26 2 1 115 1 2 32 34 35 406 10 9 186 9 8 9 0 1 195 1 0 5 0 1 59 2 0 106 6 7 526 10 11 9 1 0 218 17 17 9 1 0 233 0 1 5 6 5 55 9 7 16 1 0 8 6 1 14 0 3 468 18 21 78 chain 80083 chrX 155270560 + 75428841 75430172 L1PB1 5432 - 19 1221 43549 9 1 0 13 1 0 21 1 0 24 2 0 11 15 8 19 27 15 13 2 1 41 2 1 16 2 1 53 27 20 13 1 0 20 105 11 182 3 0 242 1 0 4 0 1 51 0 2 165 2 1 4 0 1 70 1 0 41 1 2 30 2 3 93 chain 386481 chrX 155270560 + 75430766 75435129 L1PA3long 6157 + 1784 6157 10563 463 1 0 73 0 10 1878 0 2 973 1 0 974 chain 165721 chrX 155270560 + 75436948 75439598 SVA_F 1814 - 0 1804 22544 601 683 0 247 180 18 62 1 0 876 chain 7074 chrX 155270560 + 75437576 75437814 SVA_F 1814 - 627 877 73675 10 1 0 166 1 0 10 1 0 39 0 15 10 chain 2185 chrX 155270560 + 75437814 75437844 SVA_F 1814 - 686 716 74725 30 chain 25736 chrX 155270560 + 75437844 75438220 SVA_F 1814 - 540 927 71949 87 1 0 10 1 0 166 1 0 10 1 0 36 2 17 61 chain 11510 chrX 155270560 + 75438479 75438633 SVA_F 1814 - 672 776 122602 26 50 0 78 chain 2497 chrX 155270560 + 75438505 75438531 SVA_F 1814 - 889 915 198444 26 chain 2452 chrX 155270560 + 75438633 75438659 SVA_F 1814 - 600 626 144381 26 chain 68789 chrX 155270560 + 75445493 75446299 L1PA6 6164 - 3 807 48903 7 3 0 137 1 2 658 chain 8052 chrX 155270560 + 75473585 75473685 MSTA 426 + 326 426 170738 100 chain 496693 chrX 155270560 + 75475789 75482035 L1PA6 6164 - 18 6161 7025 132 5 0 6 0 5 607 0 2 86 1 0 83 1 0 944 5 0 402 9 10 76 0 1 224 0 1 10 7 26 341 6 7 289 0 1 562 1 0 295 0 1 389 170 1 178 0 6 894 1 0 41 6 8 13 0 10 143 39 67 47 0 2 233 chain 12853 chrX 155270560 + 75480270 75480431 L1PA6 6164 + 2835 2997 148827 58 0 1 103 chain 422678 chrX 155270560 + 75482195 75487748 L1PA7 6471 - 10 5740 9469 139 1 2 181 0 2 431 6 1 17 3 4 63 1 0 264 4 3 21 0 14 78 0 1 139 0 1 80 0 1 195 0 1 48 0 3 346 4 1 5 0 3 24 0 32 41 0 1 49 5 6 282 0 1 184 11 12 179 1 0 84 0 1 78 7 6 127 1 2 139 22 7 99 0 1 424 4 5 46 3 98 41 0 1 421 0 1 375 8 44 117 0 1 682 8 10 65 chain 546408 chrX 155270560 + 75487804 75493828 L1PA2 6032 + 0 6028 1894 3060 0 1 1271 0 3 1693 chain 28017 chrX 155270560 + 75496075 75496377 AluYf4 310 + 0 302 92945 302 chain 51827 chrX 155270560 + 75498091 75498651 L1PA2 6032 - 2 562 57734 560 chain 79838 chrX 155270560 + 75500935 75502091 L1PA8 5853 - 0 1155 43668 57 2 3 33 1 0 19 2 1 16 44 42 74 2 0 44 1 0 548 13 12 14 1 5 102 1 2 40 0 1 20 0 1 4 1 0 117 chain 70911 chrX 155270560 + 75502110 75502980 L1PA8 5853 + 3809 4684 47958 340 1 6 529 chain 525083 chrX 155270560 + 75508402 75514414 L1PA3long 6157 + 4 6156 4681 147 14 15 271 0 1 96 0 5 238 1 129 2310 0 1 49 0 2 1402 0 1 1152 0 1 332 chain 4595 chrX 155270560 + 75514479 75514549 L1PA7 6471 - 779 850 199690 20 4 5 46 chain 8827 chrX 155270560 + 75514558 75514666 L1PA7 6471 - 851 959 166509 108 chain 49828 chrX 155270560 + 75514666 75515300 L1PA7 6471 - 1092 1749 59135 74 3 11 549 0 15 8 chain 195768 chrX 155270560 + 75515346 75517859 L1PA7 6471 - 1780 4307 19520 836 27 27 280 0 4 9 0 1 4 1 0 33 1 0 329 10 11 57 0 4 388 7 10 177 0 2 161 0 1 193 chain 49517 chrX 155270560 + 75518251 75518816 L1PA5 6144 - 0 565 59377 565 chain 11489 chrX 155270560 + 75525147 75525269 L1PA3long 6157 + 6035 6157 154341 122 chain 19094 chrX 155270560 + 75525678 75525908 L1PA4 6152 - 115 343 129830 74 0 1 144 2 0 5 1 0 4 chain 181518 chrX 155270560 + 75535142 75537214 L1PA4 6152 - 0 2072 20844 6 1 0 1984 0 1 81 chain 562821 chrX 155270560 + 75543184 75549215 L1HS 6032 - 0 6029 272 5674 1 0 102 1 0 253 chain 11946 chrX 155270560 + 75549216 75549352 MLT2A1 477 - 116 252 152422 136 chain 80012 chrX 155270560 + 75551212 75552249 L1PA10 4194 - 1750 2784 43586 265 0 1 33 6 2 21 7 6 7 0 1 698 chain 30976 chrX 155270560 + 75552444 75552886 L1P3 4156 + 5 446 82554 244 16 14 56 2 1 29 1 2 34 16 17 44 chain 123124 chrX 155270560 + 75560462 75561891 L1PA5 6144 + 4688 6126 30000 15 3 12 290 0 1 288 1 0 832 chain 7836 chrX 155270560 + 75574587 75574679 L1PBa 3878 - 2086 2178 172095 92 chain 6298 chrX 155270560 + 75574682 75574761 L1PB1 5432 + 3323 3402 182808 79 chain 246289 chrX 155270560 + 75579432 75582587 L1PA6 6164 - 2 3137 16428 4 1 0 236 0 1 4 30 8 61 3 2 161 1 4 365 0 4 179 0 1 258 6 5 226 1 0 1118 3 0 5 4 8 231 0 2 50 0 1 4 1 0 33 20 14 150 chain 100392 chrX 155270560 + 75584757 75586011 L1PA7 6471 - 7 1259 36657 6 6 0 142 0 1 604 24 24 61 4 7 407 chain 78611 chrX 155270560 + 75587979 75588873 L1PA4 6152 - 0 892 44220 6 2 0 886 chain 34467 chrX 155270560 + 75588873 75589298 L1P1 4361 + 3919 4341 76965 231 1 0 161 1 0 17 2 1 12 chain 24676 chrX 155270560 + 75589952 75590237 L1PA3long 6157 + 5872 6157 106577 285 chain 458799 chrX 155270560 + 75593943 75598979 L1PA2 6032 - 0 5033 8448 20 1 0 3450 2 0 1563 chain 480867 chrX 155270560 + 75599819 75606227 L1PA7 6471 + 0 6464 7696 24 0 13 374 0 1 483 0 1 372 7 8 73 6 5 120 0 2 138 0 9 40 0 1 146 36 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0 1 117 0 1 9 2 0 3 3 0 202 16 2 7 0 2 242 0 1 215 8 7 864 15 16 439 2 0 685 15 17 134 chain 9367 chrX 155270560 + 76574121 76574230 L1PA5 6144 - 4 113 163722 109 chain 52459 chrX 155270560 + 76574237 76574815 L1PA4 6152 + 5485 6063 57319 578 chain 6485 chrX 155270560 + 76582137 76582256 L1PB1 5432 - 106 211 181359 17 9 0 13 3 0 12 6 5 43 1 0 15 chain 312273 chrX 155270560 + 76585790 76590282 L1PB1 5432 + 111 5413 12920 40 0 7 7 15 8 409 1 2 15 2 3 316 17 19 136 1 0 4 0 1 317 1 0 7 2 0 5 28 11 88 12 11 429 13 12 539 5 6 211 0 756 250 1 8 10 5 0 647 0 2 68 0 6 138 6 10 12 0 1 182 1 0 100 189 266 7 0 2 41 2 1 16 1 0 44 1 0 15 1 0 4 2 0 13 54 41 16 1 0 21 1 0 13 1 0 9 chain 379856 chrX 155270560 + 76596056 76601409 L1PB1 5432 + 11 5416 10756 11 6 0 111 6 0 123 0 34 216 0 1 100 0 1 108 0 29 21 10 8 28 0 1 83 1 0 349 1 0 4 0 1 82 12 10 52 20 17 9 0 2 581 11 12 7 0 2 254 0 3 179 1 0 4 6 7 38 0 1 51 0 3 272 1 0 112 0 4 258 8 11 185 11 13 319 1 4 83 0 5 4 1 0 65 10 1 96 1 0 503 0 17 117 2 3 5 5 0 13 6 13 22 4 7 22 1 0 86 0 8 169 6 7 15 5 4 101 18 16 16 13 4 12 1 0 11 19 13 43 25 23 42 3 2 16 28 16 15 2 0 5 1 0 14 2 0 13 0 8 7 9 0 18 2 1 11 1 0 12 chain 23804 chrX 155270560 + 76609418 76609771 THE1B 368 + 1 367 111458 43 5 20 18 5 6 80 17 16 120 2 0 63 chain 12820 chrX 155270560 + 76609778 76609973 L1MA2 4263 + 3917 4105 148972 41 9 7 93 7 0 17 0 2 28 chain 509106 chrX 155270560 + 76610402 76616785 L1PA7 6471 + 32 6464 6234 371 1 2 58 6 7 208 0 1 5 1 0 98 0 4 102 3 4 216 6 0 453 1 0 198 0 18 276 0 1 7 4 5 203 2 1 149 0 1 207 15 16 25 1 0 165 0 2 62 4 6 583 2 0 1469 0 1 276 0 3 308 2 1 70 0 3 49 5 22 21 4 7 677 4 5 66 chain 519607 chrX 155270560 + 76626294 76632962 L1PA7 6471 - 5 6471 5202 424 0 1 773 1 0 175 0 37 107 1 0 273 1 3 39 0 1 274 0 8 657 0 1 162 0 1 33 2 1 582 1 0 99 1 0 42 0 2 272 0 1 5 1 0 4 0 1 120 0 3 191 304 0 7 0 4 263 8 55 71 16 15 354 20 20 29 1 0 953 0 1 402 chain 7945 chrX 155270560 + 76635733 76635991 MER20 218 + 1 213 171358 33 1 0 31 2 3 15 15 0 3 2 0 5 1 0 19 98 70 33 chain 51341 chrX 155270560 + 76639844 76640417 L1PA4 6152 + 5582 6152 58072 563 3 0 7 chain 37328 chrX 155270560 + 76719903 76720509 L1PB1 5432 + 4819 5391 73054 172 2 1 111 1 2 9 5 0 24 2 1 5 1 0 12 20 13 51 2 1 15 1 0 43 1 0 18 2 0 5 16 6 18 3 1 5 1 0 14 2 0 13 0 1 10 1 0 21 chain 67334 chrX 155270560 + 76724391 76726133 L1M1 2793 + 662 2607 49516 40 40 27 11 2 0 4 2 0 21 69 60 5 0 1 8 1 0 54 16 13 97 1 0 99 0 3 5 3 0 21 7 8 40 1 0 64 0 1 7 4 0 11 28 25 149 11 14 138 563 800 52 11 10 157 chain 533516 chrX 155270560 + 76726140 76732260 L1PA5 6144 + 3 6132 3764 117 1 15 13 21 7 784 0 1 1441 0 3 1546 1 2 1339 0 4 857 chain 7516 chrX 155270560 + 76732280 76732385 L1M1 2793 + 2593 2695 174060 35 1 0 46 1 0 11 1 0 10 chain 24325 chrX 155270560 + 76733606 76733898 AluSp 311 + 20 303 108515 273 9 0 10 chain 130546 chrX 155270560 + 76741922 76744023 L1PA15 4387 + 2144 4009 27955 5 0 3 173 313 94 106 1 4 31 0 1 303 0 2 6 2 0 42 15 14 233 2 7 27 0 1 120 0 1 389 23 0 107 9 7 65 7 5 23 7 5 14 1 0 77 chain 6599 chrX 155270560 + 76748493 76748576 MLT1D 503 - 420 503 180463 83 chain 481075 chrX 155270560 + 76749453 76756136 L1PA8A 6298 + 34 6283 7690 6 1 0 15 2 1 12 23 12 23 3 0 16 19 10 20 1 0 6 1 4 14 1 0 4 1 0 12 2 0 15 2 0 4 1 0 10 5 4 7 1 0 5 2 1 8 1 0 14 5 0 9 2 0 42 1 0 22 2 0 5 14 8 65 2 0 18 1 0 5 6 4 71 6 5 289 10 6 222 0 5 60 0 4 44 6 4 131 5 8 83 0 1 260 1 0 568 309 0 56 0 1 134 1 3 117 9 10 56 1 5 5 0 1 110 0 2 510 113 6 24 0 5 198 0 4 261 1 3 149 16 18 320 1 0 282 0 2 324 0 2 21 1 0 625 0 1 37 0 3 49 3 0 5 0 3 299 0 1 334 1 2 99 chain 9122 chrX 155270560 + 76756183 76756291 MSTA 426 - 317 426 164957 82 0 1 26 chain 6846 chrX 155270560 + 76767946 76768502 L1MA3 4352 + 0 248 178615 15 25 28 30 0 4 6 417 102 63 chain 50632 chrX 155270560 + 76769112 76769942 L1PA13 3608 + 2747 3548 58555 133 21 21 71 0 2 16 1 0 139 2 0 31 1 0 64 0 1 49 2 0 59 2 1 15 0 1 35 2 0 6 8 5 45 11 7 19 1 0 19 24 18 14 14 7 10 4 1 12 chain 305742 chrX 155270560 + 76784113 76788650 L1PA11 4918 + 7 4533 13178 35 2 0 36 10 7 27 0 1 4 2 0 11 2 0 44 21 20 21 23 18 143 0 5 110 0 5 295 7 5 270 0 1 81 8 361 93 0 4 166 0 4 39 0 1 191 0 22 20 1 0 16 334 0 142 28 9 67 0 3 27 22 3 8 0 3 127 0 1 150 2 10 20 6 7 123 2 0 28 4 0 185 1 0 486 2 0 181 1 0 17 4 0 52 2 3 45 6 7 71 6 1 489 1 0 59 14 13 7 2 0 65 8 6 10 1 0 20 4 0 10 7 2 13 chain 362658 chrX 155270560 + 76795079 76799429 L1PA7 6471 + 2087 6450 11299 402 1 0 31 0 2 118 0 1 42 1 0 218 0 2 95 5 4 413 0 1 81 2 0 479 1 0 30 1 0 40 0 3 473 0 2 279 1 0 585 0 6 227 0 3 76 0 2 235 1 0 513 chain 40608 chrX 155270560 + 76799896 76800341 L1PA2 6032 - 1 446 68424 445 chain 14480 chrX 155270560 + 76805737 76805894 L1PA5 6144 + 3773 3930 142949 157 chain 156554 chrX 155270560 + 76805895 76807657 L1PA5 6144 + 3932 5692 23792 353 0 1 619 2 0 386 1 0 401 chain 38511 chrX 155270560 + 76807657 76808102 L1PA5 6144 + 5700 6141 71421 435 4 0 6 chain 57087 chrX 155270560 + 76810628 76811349 L1PA8 5853 + 5134 5853 54483 46 1 0 72 0 4 264 0 1 43 1 0 44 2 0 66 6 5 9 1 0 52 2 1 19 1 0 53 0 1 39 chain 14930 chrX 155270560 + 76867836 76868055 L1PA8 5853 + 5638 5853 141539 37 5 4 8 2 1 56 1 0 3 1 0 4 0 1 11 1 0 90 chain 230875 chrX 155270560 + 76878323 76881913 L1PB1 5432 + 2262 5424 17261 6 0 1 126 1 6 93 8 0 49 1 0 299 1 0 47 1 4 65 8 14 97 1 0 328 0 1 4 2 1 71 0 4 7 326 0 53 8 10 173 38 19 207 4 6 114 6 5 556 4 0 176 3 11 288 77 11 24 1 0 9 17 12 10 3 0 4 0 1 46 3 2 15 1 0 40 6 5 14 56 41 9 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4704 chrX 155270560 + 76882053 76882110 MER77 626 + 524 581 198477 57 chain 24399 chrX 155270560 + 76882430 76882729 AluY 311 + 1 293 108075 110 9 7 10 5 0 165 chain 8561 chrX 155270560 + 76899976 76900069 L1PA6 6164 + 6058 6151 167956 93 chain 13572 chrX 155270560 + 76940584 76940874 L1MA1 4479 + 3917 4191 146085 27 15 11 12 5 6 105 1 0 15 0 1 8 7 5 32 31 27 6 7 0 19 chain 4467 chrX 155270560 + 76961025 76961079 L1MB7 1623 + 343 397 201146 54 chain 311008 chrX 155270560 + 76974926 76978752 L1PA7 6471 + 2571 6404 12956 69 1 2 155 1 2 297 0 4 445 14 18 955 0 2 145 5 9 281 3 0 421 3 1 120 20 7 37 10 10 69 2 1 389 0 2 295 9 17 80 chain 63460 chrX 155270560 + 76980628 76981334 L1PA5 6144 + 4662 5367 51260 632 1 0 73 chain 69002 chrX 155270560 + 76981334 76982108 L1PA5 6144 + 5368 6142 48804 774 chain 4450 chrX 155270560 + 76982404 76982454 L1PA7 6471 + 5552 5602 201336 50 chain 6299 chrX 155270560 + 76982462 76982549 L1PA7 6471 + 5617 5700 182803 10 4 0 73 chain 50499 chrX 155270560 + 76982549 76983143 L1PA7 6471 + 5702 6295 58651 435 1 0 158 chain 13390 chrX 155270560 + 76983144 76983318 L1PA7 6471 + 6298 6467 146751 163 5 0 6 chain 10728 chrX 155270560 + 76985633 76985775 L1M1 2793 + 2533 2674 157287 95 1 0 46 chain 21608 chrX 155270560 + 76990802 76991070 AluY 311 + 15 288 121739 78 0 3 36 0 1 8 12 13 134 chain 12165 chrX 155270560 + 76994489 76994838 L1PB1 5432 - 13 329 151554 15 1 0 10 8 7 17 1 0 21 19 17 5 2 0 19 25 12 10 10 9 37 11 10 9 3 1 53 2 0 8 2 0 3 2 0 10 1 0 7 14 13 12 1 0 11 chain 441737 chrX 155270560 + 77006008 77011662 L1PA8 5853 - 0 5803 9005 93 1 0 19 2 1 9 0 2 41 1 0 9 11 10 61 2 0 44 1 0 258 1 0 223 0 2 70 0 2 17 0 5 104 0 1 23 0 5 60 1 0 419 3 36 6 1 0 138 0 4 130 0 4 207 1 10 119 0 1 773 9 13 62 2 3 77 1 2 122 1 0 73 0 1 57 0 121 7 4 7 255 3 7 54 1 0 54 19 16 521 21 26 146 0 1 147 5 4 182 1 4 382 0 4 291 19 7 190 52 16 13 1 0 10 2 0 22 chain 24221 chrX 155270560 + 77015818 77016109 L1PA2 6032 + 5743 6031 109085 132 7 0 95 0 4 57 chain 141067 chrX 155270560 + 77021173 77022752 SVA_D 2077 - 0 2077 25972 379 0 2 283 0 1 10 5 1 7 0 498 504 0 1 367 5 7 11 2 0 6 chain 116825 chrX 155270560 + 77055128 77056844 L1PA7 6471 - 4 1412 32187 10 7 0 108 0 4 333 0 2 166 315 5 225 4 1 186 0 7 280 3 2 79 chain 93059 chrX 155270560 + 77064029 77065677 L1PB2 3958 - 120 1470 38554 25 15 16 16 7 6 88 0 1 4 2 1 64 1 0 37 0 1 30 5 4 94 5 1 11 2 0 62 6 0 16 0 3 36 0 14 18 0 2 55 0 9 300 1 0 45 309 6 133 2 1 19 0 3 7 6 4 65 19 7 67 7 10 69 chain 162248 chrX 155270560 + 77065677 77067654 L1PA4 6152 - 0 1971 23027 6 0 2 842 0 1 892 110 99 108 4 6 15 chain 39804 chrX 155270560 + 77073396 77074322 MER41C 542 - 0 542 69625 210 0 21 49 406 0 212 0 1 49 chain 10032 chrX 155270560 + 77076962 77077108 AluJr4 308 - 9 148 160415 8 9 0 13 5 6 65 0 1 46 chain 36611 chrX 155270560 + 77077342 77077777 L1PA7 6471 - 1 436 74086 146 18 18 271 chain 55885 chrX 155270560 + 77077777 77078710 L1P1 4361 - 2521 3522 55188 136 0 3 273 1 0 6 173 229 23 13 4 184 14 33 110 chain 32823 chrX 155270560 + 77078810 77079295 MLT2A2 560 + 0 502 79498 7 0 6 81 1 0 65 49 51 141 0 2 45 9 20 14 3 0 70 chain 27234 chrX 155270560 + 77080658 77081059 MSTA 426 + 1 411 95481 80 9 12 66 6 10 23 21 23 196 chain 8678 chrX 155270560 + 77087802 77087976 MER30 238 - 0 184 167311 26 27 0 10 1 28 50 6 0 7 2 18 45 chain 15395 chrX 155270560 + 77090149 77090392 L1MA1 4479 + 3900 4136 140208 46 1 0 6 3 0 114 13 12 22 11 9 27 chain 8112 chrX 155270560 + 77092796 77092892 U6 107 + 11 107 170426 96 chain 12317 chrX 155270560 + 77099185 77099331 L1PA4 6152 - 0 148 150948 7 0 2 139 chain 329491 chrX 155270560 + 77099339 77103070 L1P1 4361 - 613 4359 12222 49 1 0 196 1 0 305 0 1 20 1 0 24 0 2 219 0 3 618 0 4 209 0 3 273 0 1 153 0 2 113 0 2 1549 chain 4747 chrX 155270560 + 77118268 77118326 MER83 447 + 319 377 197951 58 chain 7014 chrX 155270560 + 77119028 77119143 L1MA4A 3247 + 3015 3129 177368 76 5 0 8 4 8 22 chain 5390 chrX 155270560 + 77123217 77123275 LTR40b 463 + 377 435 191090 58 chain 54369 chrX 155270560 + 77124452 77125533 L1PB2 3958 + 3058 3838 56116 74 285 0 175 2 0 54 1 0 11 11 6 61 4 21 25 1 7 51 50 25 28 1 0 21 1 0 62 1 0 74 2 0 22 1 0 63 chain 50469 chrX 155270560 + 77136774 77137351 L1PA5 6144 - 9 588 58667 73 0 1 64 0 1 440 chain 47236 chrX 155270560 + 77137351 77137888 L1P1 4361 + 3689 4225 61012 461 1 0 75 chain 23515 chrX 155270560 + 77140750 77141031 AluSg 306 + 11 292 113038 281 chain 4604 chrX 155270560 + 77145572 77145629 L1MA2 4263 - 149 205 199579 9 1 0 47 chain 25917 chrX 155270560 + 77153849 77154158 AluSc5 308 - 0 308 100349 182 1 0 126 chain 21836 chrX 155270560 + 77167179 77167446 AluSq 315 + 21 292 120869 112 0 2 143 0 2 12 chain 28095 chrX 155270560 + 77176023 77176425 L1PA16 3655 - 118 522 92667 48 11 12 56 7 5 125 2 0 77 7 12 69 chain 28172 chrX 155270560 + 77183137 77183460 L1PA5 6144 - 3 332 92395 145 0 7 104 1 0 73 chain 170619 chrX 155270560 + 77186511 77188447 SVA_D 2077 - 0 2071 21978 595 0 98 164 51 0 133 0 51 82 1 38 910 chain 4290 chrX 155270560 + 77187271 77187321 SVA_D 2077 - 984 1034 80858 50 chain 21809 chrX 155270560 + 77211377 77211881 L1MA6 2487 - 101 542 120988 7 3 0 39 128 79 32 16 0 10 1 0 152 3 0 16 23 14 7 0 10 9 0 8 58 chain 17098 chrX 155270560 + 77211907 77212223 MSTB 430 + 26 391 135322 117 0 13 45 7 12 13 45 73 14 14 17 61 chain 10148 chrX 155270560 + 77212730 77212839 L1PA4 6152 - 2 111 159856 109 chain 15665 chrX 155270560 + 77217742 77218029 MER51B 395 + 66 387 139382 31 6 6 6 0 7 50 11 28 16 26 25 10 1 0 51 4 16 75 chain 49861 chrX 155270560 + 77219921 77220543 L1PA7 6471 - 5 628 59112 144 2 3 32 1 0 5 12 13 426 chain 75304 chrX 155270560 + 77222301 77223196 L1PA8A 6298 - 8 906 45870 37 0 2 8 2 0 752 0 3 14 0 1 59 2 1 21 chain 10198 chrX 155270560 + 77230378 77230491 L1PA2 6032 - 4 118 159626 94 0 1 19 chain 4886 chrX 155270560 + 77241021 77241140 MER3 215 + 21 147 196409 17 48 55 54 chain 5470 chrX 155270560 + 77249458 77249521 MER39B 650 - 111 174 190307 63 chain 23773 chrX 155270560 + 77271547 77271904 THE1D 372 - 2 372 111641 124 7 8 45 25 27 88 6 16 62 chain 114932 chrX 155270560 + 77271916 77274166 THE1D-int 1627 - 12 1604 32813 19 0 1 53 0 5 24 6 5 57 3 7 255 4 0 70 2 0 337 39 38 22 1 0 8 20 18 5 0 2 318 2 1 85 334 0 136 324 0 126 chain 6859 chrX 155270560 + 77282244 77282346 L1PA17 2846 + 23 123 178511 4 1 0 8 1 0 26 0 1 4 1 0 57 chain 24489 chrX 155270560 + 77299487 77299772 AluSp 311 + 18 303 107601 285 chain 22590 chrX 155270560 + 77313667 77313906 L1HS 6032 - 0 239 117629 239 chain 65730 chrX 155270560 + 77313906 77314608 L1HS 6032 + 5088 5790 50230 702 chain 31332 chrX 155270560 + 77318309 77318739 MLT2A1 477 - 0 477 81927 58 0 36 11 6 13 36 1 0 150 4 8 14 8 9 142 chain 52073 chrX 155270560 + 77326419 77327073 PABL_A 660 - 0 660 57581 32 13 16 59 0 2 396 1 2 153 chain 25180 chrX 155270560 + 77328480 77328871 Tigger3b 1229 - 702 1098 103850 88 12 10 134 15 14 60 21 29 61 chain 55598 chrX 155270560 + 77328879 77329575 LTR12 884 - 2 884 55363 92 6 37 377 2 0 13 0 157 206 chain 37770 chrX 155270560 + 77331380 77331871 LTR10F 562 - 0 533 72460 47 0 1 4 1 0 10 3 2 224 0 1 42 0 14 18 0 28 142 chain 447838 chrX 155270560 + 77331876 77337027 L1PA5 6144 - 12 5175 8819 157 1 7 681 7 5 477 0 1 405 0 1 1240 2 1 1007 0 1 377 0 1 184 0 1 384 0 1 44 0 3 185 chain 17941 chrX 155270560 + 77345098 77345366 L1M1 2793 - 108 372 133001 14 2 1 42 1 0 112 13 12 70 1 0 13 chain 22249 chrX 155270560 + 77384413 77384681 AluY 311 + 0 266 119118 33 4 1 98 0 1 133 chain 5514 chrX 155270560 + 77391736 77391932 L1MC4 1079 + 35 229 189902 34 116 114 46 chain 56704 chrX 155270560 + 77399502 77401060 L1PREC2 3366 - 124 1207 54718 13 4 0 8 1 0 3 4 0 22 236 148 18 6 7 13 6 4 35 22 8 11 4 1 29 2 0 16 12 7 12 28 20 14 9 5 42 1 0 54 2 0 5 3 0 31 335 0 149 6 1 179 1 0 66 1 2 75 7 11 23 1 2 49 chain 118370 chrX 155270560 + 77402831 77404403 THE1B-int 1605 + 1 1605 31658 11 4 6 414 0 25 191 0 1 361 0 13 12 27 14 65 23 25 58 1 2 4 1 0 327 0 2 73 chain 12595 chrX 155270560 + 77407563 77407819 L1PB1 5432 - 12 268 149860 16 1 0 13 1 0 21 1 0 10 3 4 12 2 0 12 1 0 4 3 1 7 0 3 8 0 7 6 3 0 11 9 8 40 1 0 16 2 1 48 0 3 5 chain 485561 chrX 155270560 + 77407954 77413526 L1PA4 6152 - 13 6152 7536 326 1 2 2525 1 0 972 0 1 627 0 563 83 1 0 351 0 1 268 0 1 177 9 11 231 chain 284543 chrX 155270560 + 77413569 77418383 L1PBa1 4058 + 12 4040 14382 20 21 17 6 1 0 249 1 0 23 3 0 11 2 5 87 14 11 109 3 2 10 6 5 23 4 5 27 0 7 64 5 6 113 5 6 151 21 21 103 31 30 14 5 7 37 14 17 253 1 0 10 0 1 109 0 1 89 0 3 259 9 7 6 0 1 166 1 2 267 0 1 24 2 3 59 1 0 4 5 13 58 0 3 99 471 0 166 1 2 504 312 10 117 1 0 51 1 7 58 1 0 4 10 4 102 7 6 5 1 0 29 2 1 40 2 0 42 1 0 66 3 1 15 1 0 14 7 0 15 2 0 17 16 11 18 1 0 12 12 9 5 1 0 5 1 0 10 1 0 16 1 0 42 chain 27939 chrX 155270560 + 77416194 77416645 LTR7 482 - 13 482 93205 34 15 16 142 0 31 25 1 0 106 15 14 12 32 20 69 chain 138822 chrX 155270560 + 77429118 77430805 HERVL-int 5654 - 3946 5654 26347 837 0 5 120 0 3 142 3 15 398 0 1 187 chain 25167 chrX 155270560 + 77431001 77431406 MLT2A2 560 - 40 560 103928 14 0 6 39 0 5 43 2 111 70 65 63 23 3 0 146 chain 283999 chrX 155270560 + 77431640 77435155 L1P1 4361 + 676 3910 14417 550 3 4 439 0 2 896 5 7 175 0 1 736 287 0 424 chain 127326 chrX 155270560 + 77439974 77444328 L1PB1 5432 + 632 4699 12279 275 3 4 286 1 4 194 1 0 15 16 8 258 2 1 769 0 5 49 1 0 211 3 0 5 0 3 67 12 3 32 377 0 21 1 0 120 2 86 684 0 4 80 0 3 143 0 1 204 0 4 27 1 0 35 1 0 382 0 4 41 0 4 35 chain 29764 chrX 155270560 + 77442187 77442531 L1PA5 6144 + 5795 6139 85590 344 chain 550991 chrX 155270560 + 77444355 77450497 L1PA3long 6157 + 7 6156 1313 715 0 1 1669 0 4 46 0 1 2370 0 1 1342 chain 11522 chrX 155270560 + 77450793 77451187 L1PB1 5432 + 4707 5103 12279 211 0 1 178 0 1 5 chain 236992 chrX 155270560 + 77461044 77464460 L1PA7 6471 + 3479 6461 16932 18 2 0 52 4 8 276 17 18 151 0 1 461 1 2 58 1 0 36 0 1 323 0 1 736 2 0 213 439 0 314 5 6 4 1 0 139 11 12 152 chain 9376 chrX 155270560 + 77463445 77463554 L1PA5 6144 - 0 109 163676 109 chain 237440 chrX 155270560 + 77469250 77472408 HERVK22-int 3844 - 15 3844 16912 73 13 12 56 7 6 12 0 653 125 47 48 6 0 2 31 4 3 125 0 3 5 20 29 681 0 2 434 16 16 243 0 2 794 8 9 318 0 4 97 3 0 40 chain 12682 chrX 155270560 + 77478150 77478303 L1PREC2 3366 - 2206 2359 149522 153 chain 482711 chrX 155270560 + 77481404 77489006 L1PA7 6471 - 6 6464 7635 6 3 0 150 1 2 456 42 9 218 0 3 397 3 4 30 0 1 210 5 2 165 0 74 462 9 9 87 117 0 232 4 0 25 0 3 69 17 15 212 0 1 125 0 1 69 55 54 183 0 1 249 9 12 248 1098 0 179 1 3 127 8 7 287 1 0 4 7 8 31 0 1 257 2 1 419 0 1 77 16 35 487 31 36 20 4 3 4 0 1 102 17 14 104 1 0 68 2 0 114 44 52 232 chain 98718 chrX 155270560 + 77485275 77486327 L1PA2 6032 + 4977 6029 37097 1052 chain 2628 chrX 155270560 + 77502254 77502305 L1PREC2 3366 + 2984 3033 231330 22 6 4 23 chain 286608 chrX 155270560 + 77514146 77517383 L1PA3long 6157 - 0 3245 14254 843 0 4 95 0 1 1136 0 1 181 3 4 199 1 0 4 0 1 765 0 1 10 chain 111994 chrX 155270560 + 77520679 77521986 SVA_D 2077 - 337 2075 33668 333 22 23 72 4 394 153 0 40 723 chain 131124 chrX 155270560 + 77529729 77531238 L1PA4 6152 + 4657 6152 27830 120 14 0 375 0 1 735 7 5 143 0 1 115 chain 20980 chrX 155270560 + 77541999 77542240 L1PA3long 6157 - 0 251 123992 11 1 4 138 0 7 91 chain 2810 chrX 155270560 + 77542746 77542850 L1MB8 1703 + 1438 1546 228620 25 41 44 13 7 8 18 chain 510835 chrX 155270560 + 77544467 77550612 L1PA6 6164 - 4 6164 6082 492 0 1 567 15 16 80 0 1 360 1 0 49 9 16 870 11 6 124 3 1 5 0 2 271 6 5 77 5 1 30 1 0 69 0 1 437 0 1 345 7 0 143 1 0 744 1 0 482 0 25 372 1 0 152 1 0 6 0 1 408 chain 76180 chrX 155270560 + 77556333 77557284 THE1B-int 1605 - 625 1605 45377 272 2 3 248 0 25 294 1 3 5 0 1 129 chain 51540 chrX 155270560 + 77559886 77560526 PABL_A 660 + 0 652 57935 84 0 9 34 1 0 151 0 1 156 3 4 148 0 2 63 chain 5189 chrX 155270560 + 77562178 77562255 MIRb 242 + 61 141 193151 5 0 1 38 4 6 30 chain 65179 chrX 155270560 + 77572130 77573096 L1PB2 3958 + 2869 3821 50484 5 1 0 4 1 0 46 1 0 40 0 1 183 17 19 140 2 0 43 1 2 8 2 1 13 5 0 65 3 1 12 4 0 78 0 5 5 1 0 77 1 0 52 11 10 74 2 0 22 1 0 46 chain 160980 chrX 155270560 + 77574621 77576425 L1PA4 6152 - 9 1818 23198 566 0 2 273 0 4 427 1 0 537 chain 23827 chrX 155270560 + 77576913 77577202 AluSp 311 + 8 297 111320 289 chain 6189 chrX 155270560 + 77584433 77584504 LTR5B 1012 + 13 84 183658 71 chain 7202 chrX 155270560 + 77587649 77587739 L1PA16 3655 + 3506 3593 176056 72 3 0 15 chain 271751 chrX 155270560 + 77598310 77601792 L1P2 5180 + 1661 5171 15096 186 10 11 149 11 12 187 0 2 111 1 0 714 0 2 197 0 4 285 0 1 111 0 1 263 0 2 23 23 24 208 0 1 478 1 2 335 8 9 22 0 1 18 0 1 14 0 11 41 1 0 48 1 0 36 chain 135988 chrX 155270560 + 77602102 77603776 HERV17-int 4347 - 2227 4334 26838 580 1 0 4 5 6 22 0 1 35 7 8 110 0 1 147 1 3 436 4 434 34 2 0 5 0 2 15 2 0 138 1 0 27 2 0 10 2 6 15 5 4 64 chain 36775 chrX 155270560 + 77605539 77606015 LTR17 781 - 53 528 73840 297 5 4 4 0 1 95 1 0 74 chain 10372 chrX 155270560 + 77610585 77610744 L1MA2 4263 - 2068 2229 158818 33 4 5 50 5 6 67 chain 388843 chrX 155270560 + 77623896 77628682 L1PA7 6471 - 5 4859 10490 307 0 10 58 1 0 87 1 3 380 1 0 295 5 1 36 4 1 190 3 2 110 0 1 36 1 0 314 0 1 55 0 1 4 1 0 53 1 3 261 0 53 80 12 18 1300 0 2 116 0 4 12 0 1 37 0 2 72 3 2 236 8 2 105 6 8 595 chain 5948 chrX 155270560 + 77631439 77631525 LTR47A 437 - 44 128 185702 30 2 1 30 1 0 23 chain 21818 chrX 155270560 + 77658294 77658551 L1PA11 4918 + 949 1206 120280 257 chain 100996 chrX 155270560 + 77658551 77659651 L1PA2 6032 - 3 1103 36514 14 0 1 1081 1 0 4 chain 445760 chrX 155270560 + 77665359 77670276 L1PA2 6032 + 1108 6032 8880 1345 0 3 112 0 1 3175 0 3 285 chain 58330 chrX 155270560 + 77675366 77676029 L1PA7 6471 - 5 668 53790 663 chain 55346 chrX 155270560 + 77696863 77697451 L1HS 6032 - 34 622 55492 588 chain 3349 chrX 155270560 + 77698554 77698592 LTR8 732 - 108 146 218060 38 chain 396137 chrX 155270560 + 77701081 77705509 L1PA4 6152 - 0 4428 10236 851 1 0 1257 1 2 2318 chain 27957 chrX 155270560 + 77720935 77721522 L1PB1 5432 - 10 517 93138 13 6 4 4 0 1 9 1 0 21 1 0 24 2 0 15 1 0 4 2 0 16 50 39 53 1 0 47 20 14 14 1 0 10 1 0 20 1 0 15 53 2 182 chain 532662 chrX 155270560 + 77721722 77727888 L1PA4 6152 - 1 6150 3891 1664 0 2 815 2 0 979 1 0 4 0 1 185 0 1 431 7 6 815 5 4 224 1 2 182 23 6 97 1 2 155 1 0 256 1 0 4 0 1 313 chain 193218 chrX 155270560 + 77729298 77731937 L1PBa 3878 - 138 2786 19753 23 3 2 23 4 0 472 3 0 61 17 20 74 18 26 140 2 0 184 3 1 6 0 7 770 9 10 6 1 0 259 4 9 32 4 1 11 0 1 352 0 1 6 4 3 148 chain 158008 chrX 155270560 + 77733191 77735112 L1PA7 6471 - 2 1925 23591 10 2 0 105 2 0 220 3 4 420 3 0 86 0 4 366 5 0 181 1 0 73 0 1 19 0 1 305 0 8 120 chain 301800 chrX 155270560 + 77743885 77747301 L1PA4 6152 - 7 3424 13329 14 1 0 651 5 6 1193 0 1 1552 chain 21560 chrX 155270560 + 77769370 77769665 LTR2B 499 - 0 305 121924 182 1 0 8 5 6 49 15 25 35 chain 5869 chrX 155270560 + 77786002 77786133 L1PB3 3668 - 55 174 186484 14 7 4 13 1 0 13 10 6 34 3 1 25 2 0 9 chain 4044 chrX 155270560 + 77791115 77791159 L1PA5 6144 - 262 306 206737 44 chain 23798 chrX 155270560 + 77791159 77791419 L1PA5 6144 + 5877 6137 111488 260 chain 322899 chrX 155270560 + 77804822 77808479 L1P1 4361 + 651 4321 12485 104 5 7 654 0 5 2137 1 0 102 0 1 109 0 1 214 0 3 26 0 4 132 1 0 155 1 0 16 chain 3016 chrX 155270560 + 77809820 77809853 HSMAR2 1300 + 773 806 224699 33 chain 27492 chrX 155270560 + 77820043 77820506 L1MA2 4263 - 205 663 94672 23 3 4 63 27 25 26 26 26 85 24 21 123 1 0 62 chain 33880 chrX 155270560 + 77836619 77837057 L1PA7 6471 + 6028 6470 77808 194 11 10 80 0 2 6 0 1 135 0 2 12 chain 32046 chrX 155270560 + 77837125 77837560 L1PA8 5853 + 5424 5853 80785 140 1 0 44 5 4 67 1 0 5 5 4 40 14 13 21 1 0 91 chain 22986 chrX 155270560 + 77853272 77853547 AluSp 311 - 26 301 115686 275 chain 5079 chrX 155270560 + 77855173 77855236 L1PA16 3655 + 2015 2078 194305 63 chain 35706 chrX 155270560 + 77855272 77855910 L1PB1 5432 + 4815 5424 75264 283 18 16 20 1 0 12 24 21 53 2 1 16 1 0 38 6 5 12 27 16 19 8 5 14 3 1 23 1 0 22 1 0 12 1 0 16 1 0 4 chain 78917 chrX 155270560 + 77881623 77882612 L1PA7 6471 - 1 1002 44097 40 0 3 294 2 1 12 11 13 19 4 14 371 1 0 82 1 0 152 chain 106548 chrX 155270560 + 77884118 77885524 L1P3 4156 - 19 1430 35107 21 1 0 9 2 0 17 1 0 82 9 7 359 0 2 4 1 0 13 20 13 6 0 7 43 4 8 542 0 3 114 0 4 9 1 0 148 chain 14143 chrX 155270560 + 77904535 77904874 L1PB1 5432 + 5114 5423 144062 24 38 31 51 2 1 10 14 13 33 7 6 13 3 0 16 9 0 13 10 7 14 2 0 24 1 0 22 1 0 12 1 0 19 chain 9964 chrX 155270560 + 77927135 77927256 L1PA5 6144 - 4 125 160757 121 chain 4100 chrX 155270560 + 77947835 77947899 MADE1 96 - 15 95 205943 31 3 19 30 chain 184281 chrX 155270560 + 77951108 77953345 L1PA7 6471 + 4246 6465 20560 425 0 4 700 0 1 546 18 0 381 8 9 143 6 0 10 chain 139083 chrX 155270560 + 77974270 77975831 L1PA3long 6157 + 4600 6157 26281 652 4 0 905 chain 14601 chrX 155270560 + 77976978 77977324 L1PB1 5432 + 5117 5430 142583 20 12 10 9 2 0 3 2 0 9 3 1 51 2 1 16 5 4 40 1 0 15 3 0 6 15 6 18 9 6 14 2 0 24 1 0 21 1 0 13 1 0 5 6 5 11 1 0 5 chain 83045 chrX 155270560 + 78015618 78016540 L1PA4 6152 - 816 1738 42314 922 chain 68997 chrX 155270560 + 78016540 78017335 L1PA4 6152 + 5346 6151 48702 736 1 11 58 chain 64174 chrX 155270560 + 78020746 78021447 SVA_D 2077 + 1278 2077 50924 30 0 98 671 chain 363717 chrX 155270560 + 78029785 78035033 L1PB1 5432 - 329 5355 11270 205 1 14 50 19 27 108 1 2 71 10 0 49 0 1 64 0 4 539 6 7 20 0 3 117 22 24 59 27 17 475 7 11 396 2 0 184 0 1 75 1 2 79 4 5 223 0 1 23 1 0 12 0 67 231 314 0 138 0 1 96 1 0 90 0 5 26 0 2 169 1 5 154 0 4 83 6 1 277 1 2 6 0 1 40 9 6 228 0 1 48 13 16 15 12 5 49 0 1 391 chain 36918 chrX 155270560 + 78041945 78042399 MER9a3 513 + 15 470 73636 96 0 1 144 1 0 177 2 3 34 chain 2567 chrX 155270560 + 78056596 78056999 THE1C-int 1605 + 23 503 76326 18 1 0 84 1 55 23 0 11 101 13 19 111 0 7 14 0 2 5 2 0 30 chain 247207 chrX 155270560 + 78057874 78060652 L1PA3long 6157 - 0 2777 16385 258 0 1 4 3 0 1975 0 1 538 chain 103151 chrX 155270560 + 78060652 78061822 L1PA3long 6157 + 2217 3386 35834 109 7 5 834 0 1 220 chain 1376 chrX 155270560 + 78061861 78062077 THE1C-int 1605 + 1376 1592 76326 216 chain 10995 chrX 155270560 + 78072487 78072715 L1MA3 4352 + 4129 4322 156221 88 17 13 4 0 1 23 2 0 24 8 6 23 28 0 11 chain 34392 chrX 155270560 + 78094558 78095151 MER4A1_ 611 + 4 607 77073 41 0 1 76 0 2 86 3 0 47 17 0 15 0 23 86 29 34 17 2 0 6 50 52 106 1 0 11 chain 172743 chrX 155270560 + 78109473 78111394 L1PA3long 6157 - 1 1925 21740 158 0 3 1763 chain 359 chrX 155270560 + 78111395 78111483 L1PA3long 6157 + 4131 4219 60261 88 chain 27886 chrX 155270560 + 78116958 78117437 L1M1 2793 + 803 1271 93409 26 22 19 45 53 47 62 1 0 59 0 1 118 1 0 6 4 7 55 4 0 23 chain 107622 chrX 155270560 + 78121196 78122524 L1P1 4361 - 33 3777 34821 23 1 0 155 1 0 201 1 2426 822 7 0 117 chain 2892 chrX 155270560 + 78122524 78123233 L1PA3long 6157 + 5447 6157 60261 456 0 1 253 chain 161276 chrX 155270560 + 78136835 78138933 L1PA7 6471 - 2219 4283 23126 240 0 3 173 17 0 102 1 0 127 1 2 23 1 2 62 0 1 20 1 0 863 48 18 181 0 8 100 0 1 138 chain 182848 chrX 155270560 + 78138933 78141146 L1PA7 6471 + 4246 6457 20694 422 0 4 56 0 1 81 0 1 352 1 2 375 1 0 7 1 2 72 1 0 481 8 0 355 chain 8918 chrX 155270560 + 78155120 78155233 THE1B-int 1605 - 35 148 166048 113 chain 38217 chrX 155270560 + 78155562 78155978 L1PA3long 6157 - 0 416 71818 416 chain 52252 chrX 155270560 + 78180184 78180833 L1PB 1623 - 445 1099 57462 471 0 4 140 0 1 38 chain 13559 chrX 155270560 + 78182479 78182830 L1PB1 5432 + 5099 5419 146137 4 1 0 14 3 0 17 1 0 13 1 0 11 4 0 11 3 1 50 14 16 33 18 16 11 3 0 6 23 15 10 8 5 14 5 3 21 1 0 21 1 0 13 1 0 15 chain 201024 chrX 155270560 + 78192812 78195338 L1PA7 6471 - 4 2522 19141 8 1 0 99 0 5 4 5 0 456 7 4 267 0 3 323 1 0 20 0 1 472 0 2 125 1 5 101 0 1 50 0 2 135 6 4 96 0 3 271 0 5 6 22 0 50 chain 23137 chrX 155270560 + 78199063 78199429 THE1A 353 - 0 353 114956 75 1 0 161 18 8 13 17 16 32 0 1 23 11 9 15 chain 7985 chrX 155270560 + 78217643 78217786 L1PB1 5432 - 2 135 171138 6 1 0 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 chain 77748 chrX 155270560 + 78224083 78225127 MER11A 1151 - 0 1141 44635 13 1 2 50 2 1 223 31 2 24 6 31 123 6 9 96 4 0 18 1 0 16 0 7 92 0 1 149 4 0 116 0 99 69 chain 386777 chrX 155270560 + 78229457 78234132 L1PA6 6164 - 2 4673 10555 11 3 0 324 0 1 340 1 0 45 0 1 723 17 4 154 0 3 474 0 1 127 0 3 5 3 0 43 1 2 204 0 1 5 3 0 15 0 1 485 0 1 80 0 4 98 0 1 79 0 1 275 2 0 192 0 1 126 1 2 839 chain 13723 chrX 155270560 + 78240021 78240396 MSTA 426 - 0 410 145530 77 127 145 34 23 36 4 1 0 17 12 17 80 chain 84650 chrX 155270560 + 78248553 78249491 L1PA3long 6157 - 0 939 41659 535 0 1 403 chain 479628 chrX 155270560 + 78262920 78269371 L1PA7 6471 - 2 6471 7741 99 0 1 4 1 0 392 0 1 249 118 114 116 6 4 281 0 1 532 0 4 50 3 1 144 0 2 199 0 13 257 9 5 7 0 1 71 2 1 92 19 12 52 0 3 205 3 7 31 1 6 77 2 1 495 0 2 36 10 14 246 0 2 473 1 2 201 0 2 111 3 2 45 0 2 201 0 3 91 1 2 111 0 2 18 8 8 55 0 2 28 11 13 225 6 10 151 0 1 22 12 12 164 0 6 8 47 3 257 1 2 26 3 15 26 0 1 143 41 35 6 0 6 107 0 1 31 0 1 8 chain 108399 chrX 155270560 + 78276411 78277688 L1PA4 6152 + 4908 6152 34592 393 1 0 841 32 0 10 chain 519920 chrX 155270560 + 78282093 78288223 L1PA5 6144 - 0 6141 5169 258 0 1 507 0 1 755 1 0 757 0 1 189 3 0 505 1 0 413 0 1 402 0 1 106 5 6 110 0 3 561 0 3 149 1 6 326 14 14 239 1 2 259 2 5 418 1 15 63 23 4 61 chain 30650 chrX 155270560 + 78288419 78288872 MER57A1 433 - 4 433 83120 115 10 7 25 18 16 4 0 1 11 20 0 250 chain 18400 chrX 155270560 + 78297244 78297498 THE1A-int 1579 - 11 283 131788 60 0 1 14 1 17 35 9 10 135 chain 116275 chrX 155270560 + 78311450 78314916 L1P1 4361 + 1351 2675 32349 484 2141 0 440 1 0 400 chain 94952 chrX 155270560 + 78311948 78313002 L1PA3long 6157 - 1065 2119 38111 1054 chain 93555 chrX 155270560 + 78313002 78314057 L1PA3long 6157 + 5103 6157 38460 906 3 2 146 chain 3193 chrX 155270560 + 78324770 78324804 LTR5 62 + 4 38 221049 34 chain 412185 chrX 155270560 + 78327504 78333195 L1PA8 5853 + 497 5853 9740 97 8 9 27 0 3 5 3 0 12 1 0 4 1 2 6 0 1 297 0 3 174 2 0 5 1 4 267 3 4 601 7 0 221 10 4 287 341 0 479 1 2 203 16 0 179 0 1 63 0 35 99 4 1 303 3 4 435 4 0 182 0 1 226 5 6 254 5 7 160 8 7 385 1 0 49 2 0 68 1 0 61 2 1 19 1 0 93 chain 100280 chrX 155270560 + 78341520 78342607 L1PA2 6032 - 0 1087 36698 1087 chain 27281 chrX 155270560 + 78361326 78361652 L1PA8 5853 + 5214 5540 95336 326 chain 10229 chrX 155270560 + 78361652 78361791 L1PA8 5853 + 5541 5679 159475 23 1 0 31 0 2 11 2 0 71 chain 3119 chrX 155270560 + 78361792 78361854 L1PA8 5853 + 5679 5740 222561 14 13 12 35 chain 9729 chrX 155270560 + 78361856 78361969 L1PA8 5853 + 5741 5853 161942 19 1 0 93 chain 25301 chrX 155270560 + 78371921 78372244 THE1D-int 1627 - 1280 1602 103225 310 1 0 12 chain 18043 chrX 155270560 + 78372297 78372650 THE1D 372 - 0 364 132751 126 2 8 6 6 0 32 33 34 28 4 0 6 46 60 64 chain 8174 chrX 155270560 + 78374499 78374630 L1P4 1494 - 804 938 170101 37 0 1 13 18 20 63 chain 97478 chrX 155270560 + 78376461 78377537 L1PA4 6152 - 9 1085 37430 1076 chain 10864 chrX 155270560 + 78433394 78433585 L1MA1 4479 + 4009 4186 156725 66 4 3 29 2 0 35 1 0 9 11 8 13 7 0 14 chain 32693 chrX 155270560 + 78448324 78448808 L1PA8 5853 - 0 534 79697 6 0 1 86 2 1 16 5 4 46 18 16 69 3 1 43 1 0 77 10 66 102 chain 28463 chrX 155270560 + 78449143 78449495 L1PA8 5853 + 4634 4987 91326 248 0 1 104 chain 9992 chrX 155270560 + 78449504 78449630 L1PA8 5853 + 4997 5122 160617 12 2 0 84 0 1 28 chain 373113 chrX 155270560 + 78452062 78456928 L1PA7 6471 + 1595 6466 10987 97 0 1 16 0 1 244 0 1 515 0 60 114 11 12 33 16 13 396 7 14 432 15 16 418 5 3 27 0 2 85 1 0 141 1 0 869 4 0 323 1 0 69 68 9 111 0 7 291 0 12 13 42 20 9 0 1 115 0 2 49 0 1 14 0 1 104 5 4 47 2 3 156 chain 542394 chrX 155270560 + 78461205 78467324 L1PA3long 6157 - 1 6153 2447 4 1 0 840 0 8 2121 2 1 5 0 1 431 0 5 49 0 1 295 0 1 813 0 6 353 0 1 774 0 1 84 2 13 345 chain 61232 chrX 155270560 + 78469845 78470699 L1PA7 6471 - 10 872 52242 29 49 0 8 0 49 67 3 4 231 7 8 393 0 3 41 4 7 22 chain 295133 chrX 155270560 + 78470959 78474975 L1P2 5180 - 2 3953 13693 4 1 0 17 0 1 20 1 0 49 1 0 386 0 1 65 8 4 278 0 3 100 4 3 723 1 2 126 27 26 161 2 1 279 0 4 6 17 13 446 60 14 68 2 1 50 19 0 15 1 3 229 0 3 505 9 12 16 6 5 4 0 1 75 33 30 202 chain 92254 chrX 155270560 + 78479425 78480432 L1PA3long 6157 - 15 1023 38890 139 0 1 868 chain 75501 chrX 155270560 + 78480432 78481282 L1P1 4361 + 3381 4230 45767 770 1 0 79 chain 71074 chrX 155270560 + 78507260 78508188 L1PA7 6471 - 2 966 47900 11 1 0 101 18 0 246 0 47 142 1 0 19 0 3 171 0 1 98 0 4 35 0 1 85 chain 55726 chrX 155270560 + 78521375 78521997 L1PA4 6152 - 17 639 55285 622 chain 249412 chrX 155270560 + 78532848 78535842 L1PA7 6471 + 3451 6438 16288 830 0 1 467 0 1 200 1 0 669 1 2 6 8 0 122 3 2 687 chain 23079 chrX 155270560 + 78551790 78552061 AluSp 311 - 42 311 115251 137 2 0 132 chain 19956 chrX 155270560 + 78566435 78566675 L1PA3long 6157 - 96 339 127284 52 6 9 182 chain 7528 chrX 155270560 + 78566675 78566763 L1PA3long 6157 + 6072 6157 173990 80 3 0 5 chain 257307 chrX 155270560 + 78571008 78574712 L1PB1 5432 - 8 5376 15863 4 1 0 16 1 0 12 1 0 22 1 0 24 2 0 8 14 11 18 27 15 13 1 0 44 1 0 17 1 0 50 29 23 9 1 0 24 1 0 8 0 3 258 0 1725 278 2 3 57 8 0 44 2 1 150 0 5 88 6 0 75 3 0 35 0 8 155 17 8 189 8 10 22 32 20 226 11 12 121 7 12 183 23 9 14 1 0 254 0 1 283 26 26 117 12 12 157 2 0 255 0 1 233 chain 18074 chrX 155270560 + 78575840 78576181 L1MA3 4352 + 4001 4316 132664 92 44 21 18 0 2 28 5 6 12 1 0 11 1 0 62 8 6 23 1 0 6 1 0 28 chain 42063 chrX 155270560 + 78580693 78581208 L1P3 4156 - 3232 3748 66540 74 1 0 337 0 1 43 2 3 58 chain 33304 chrX 155270560 + 78594805 78595242 L1PA7 6471 - 1 433 78724 4 1 0 24 11 7 303 0 1 86 1 0 7 chain 23207 chrX 155270560 + 78613760 78614021 L1PA3long 6157 - 0 260 114658 17 1 0 243 chain 47447 chrX 155270560 + 78630038 78630732 L1PA11 4918 - 414 1101 60869 16 1 0 14 2 0 72 2 0 8 2 1 65 6 0 134 0 3 40 20 21 108 8 9 94 1 0 76 0 1 25 chain 278262 chrX 155270560 + 78645045 78648186 L1PA4 6152 + 3015 6152 14737 41 1 2 121 1 0 499 0 1 1622 0 1 176 0 1 413 14 6 103 0 1 150 chain 33099 chrX 155270560 + 78648204 78648589 L1PA5 6144 + 5761 6144 79056 373 2 0 10 chain 8879 chrX 155270560 + 78661677 78661809 MER20 218 + 37 170 166231 43 16 17 73 chain 134891 chrX 155270560 + 78662590 78664466 L1PA11 4918 + 2312 4560 27035 228 12 0 96 0 1 78 2 0 43 0 1 493 1 2 116 1 4 306 0 380 135 2 7 101 6 11 10 1 0 7 1 6 43 11 14 81 2 0 13 1 0 23 17 8 11 13 9 15 1 0 6 chain 42019 chrX 155270560 + 78672959 78673447 L1PA5 6144 - 5 493 66595 140 4 3 6 0 1 338 chain 7774 chrX 155270560 + 78673448 78673535 L1PA5 6144 + 5570 5657 172456 87 chain 3497 chrX 155270560 + 78678309 78678348 MLT2A2 560 - 485 524 215409 39 chain 2890 chrX 155270560 + 78679585 78679621 MER11C 1089 + 101 137 227201 36 chain 36780 chrX 155270560 + 78706183 78706647 MER4A1 472 - 11 472 73826 100 4 0 129 5 6 226 chain 47474 chrX 155270560 + 78707944 78708574 PABL_A 660 - 0 660 60853 76 0 2 139 0 4 152 9 0 23 0 1 129 9 32 9 0 9 84 chain 21211 chrX 155270560 + 78709417 78709662 L1PA7 6471 - 1015 1260 123174 245 chain 81967 chrX 155270560 + 78709664 78710666 L1PA7 6471 + 5458 6467 42775 156 0 3 519 0 1 154 18 20 4 0 1 151 chain 62501 chrX 155270560 + 78711709 78712582 LTR12 884 + 1 884 51679 118 0 25 127 0 67 26 0 22 341 105 1 156 chain 4946 chrX 155270560 + 78712352 78712426 LTR12 884 + 788 861 190211 54 1 0 19 chain 26299 chrX 155270560 + 78723172 78723545 L1PA8 5853 + 5486 5853 98837 34 1 2 42 1 0 49 2 0 66 1 0 8 0 6 6 8 1 40 2 1 22 1 0 90 chain 4248 chrX 155270560 + 78742896 78742946 L1PA3long 6157 + 6107 6157 203899 50 chain 486548 chrX 155270560 + 78749363 78755755 L1PA4 6152 + 25 6125 7498 96 9 23 327 0 4 484 25 0 215 9 0 284 0 50 453 0 1 6 1 0 233 0 2 76 9 0 36 9 10 4 1 0 768 0 12 66 1 3 31 0 1 568 0 1 237 11 3 249 0 1 230 0 1 79 20 11 13 3 4 237 325 0 434 1 5 18 1 0 737 0 1 86 chain 11337 chrX 155270560 + 78755795 78755996 L1MA1 4479 + 3874 4074 154928 12 1 3 47 41 38 100 chain 28949 chrX 155270560 + 78760209 78760516 AluYa5 310 + 0 306 89223 132 1 0 174 chain 3952 chrX 155270560 + 78762839 78762883 L1PA4 6152 + 3381 3425 208105 44 chain 235181 chrX 155270560 + 78762884 78765579 L1PA4 6152 + 3440 6143 17018 500 0 1 50 0 3 34 0 3 604 16 15 14 0 1 155 0 1 555 9 8 433 0 1 325 chain 134174 chrX 155270560 + 78768547 78770365 MER61-int 3695 + 903 2726 27170 14 29 32 80 0 3 219 0 1 83 6 5 80 7 5 152 4 0 90 0 1 117 1 3 6 1 0 72 11 12 301 8 11 425 1 0 111 chain 20765 chrX 155270560 + 78786550 78787160 LTR12C 1709 + 773 1541 124730 64 1 0 27 4 45 88 0 41 37 0 84 44 302 295 43 chain 3185 chrX 155270560 + 78786857 78786893 LTR12C 1709 + 682 718 221211 36 chain 53688 chrX 155270560 + 78793210 78793908 THE1B-int 1605 + 870 1599 56552 360 7 40 131 3 2 63 1 0 133 chain 13633 chrX 155270560 + 78805698 78806014 AluYk4 311 + 135 299 145842 12 37 0 5 115 0 147 chain 28921 chrX 155270560 + 78809133 78809484 THE1C 375 + 0 351 89366 351 chain 29541 chrX 155270560 + 78811077 78811453 THE1C 375 + 0 375 86450 36 0 1 71 2 1 241 1 0 25 chain 53185 chrX 155270560 + 78881406 78882099 THE1A-int 1579 - 6 726 56901 75 0 5 18 0 1 62 0 5 70 0 4 33 0 1 23 0 1 55 8 17 269 2 3 78 chain 21136 chrX 155270560 + 78904701 78905018 L1PA8 5853 - 1 307 123424 92 1 0 19 2 1 52 1 0 7 7 6 11 5 1 55 2 0 46 1 0 16 chain 506125 chrX 155270560 + 78905724 78912085 L1PA6 6164 - 2 6163 6457 10 1 0 366 0 1 474 1 2 35 1 8 67 193 0 417 8 20 246 0 1 889 2 1 412 4 0 23 0 1 4 2 3 848 21 0 133 0 1 673 10 0 273 0 1 384 0 1 185 1 0 218 6 5 115 60 64 30 16 16 170 1 2 62 chain 34218 chrX 155270560 + 78913603 78914067 L1PA7 6471 - 17 485 77324 75 1 9 7 8 0 15 0 1 27 2 0 7 1 6 187 0 1 29 2 1 103 chain 93799 chrX 155270560 + 78927442 78928532 L1PA7 6471 + 5363 6458 38410 493 0 3 277 0 1 5 0 1 315 chain 515138 chrX 155270560 + 78946521 78953241 L1PA7 6471 - 6 6471 5653 137 7 0 6 8 16 672 6 13 636 0 1 305 6 10 61 0 2 371 0 23 194 1 0 191 0 7 198 0 9 65 0 4 5 313 0 35 25 20 704 0 1 74 4 5 228 0 1 442 1 0 79 0 1 550 5 6 507 0 1 862 0 1 22 chain 28993 chrX 155270560 + 78954999 78955317 L1PA2 6032 + 5714 6032 89019 318 chain 16038 chrX 155270560 + 78963277 78963639 L1PA13 3608 + 3128 3488 138257 29 8 7 58 10 7 25 43 53 21 12 11 56 13 11 35 2 0 7 2 0 20 7 6 14 chain 116490 chrX 155270560 + 78973197 78974490 L1PA3long 6157 - 0 1315 32283 607 0 22 686 chain 3268 chrX 155270560 + 78974891 78974937 MER4D1 891 + 303 349 219628 12 1 0 7 0 1 26 chain 9206 chrX 155270560 + 78974976 78975092 LTR29 598 + 465 581 164525 116 chain 38187 chrX 155270560 + 78994062 78994592 MLT2A2 560 + 0 560 71856 169 22 38 72 0 2 30 1 0 94 1 12 14 0 1 58 0 1 69 chain 85661 chrX 155270560 + 78998579 78999511 L1PA3long 6157 - 6 938 41288 932 chain 6082 chrX 155270560 + 78999511 78999591 L1P1 4361 + 4249 4328 182129 55 2 1 23 chain 37022 chrX 155270560 + 79005282 79005790 MER9a3 513 - 0 513 73490 55 0 2 19 4 5 137 15 0 3 3 0 17 4 21 143 0 1 90 0 2 18 chain 556028 chrX 155270560 + 79021102 79027122 L1PA2 6032 - 10 6030 722 6020 chain 154878 chrX 155270560 + 79043474 79045191 L1PA3long 6157 - 0 1717 23993 338 0 1 440 1 0 938 chain 22741 chrX 155270560 + 79046145 79046462 L1PA11 4918 - 434 742 116867 10 2 0 67 2 0 12 8 7 60 5 0 136 0 1 15 chain 43102 chrX 155270560 + 79052144 79052792 LTR76 689 + 0 667 65286 14 0 8 23 5 4 80 8 28 18 0 2 212 2 0 8 2 1 71 6 12 33 6 0 35 2 1 86 5 0 11 5 4 16 chain 28230 chrX 155270560 + 79072211 79072510 AluYa5 310 - 12 310 92195 172 1 0 126 chain 45813 chrX 155270560 + 79074136 79074727 PRIMA4_LTR 623 - 8 604 62216 186 0 4 33 1 0 20 0 2 77 1 0 30 4 5 209 1 0 5 0 1 24 chain 66720 chrX 155270560 + 79082682 79083461 LTR17 781 - 0 781 49774 14 0 1 439 0 1 326 chain 41509 chrX 155270560 + 79083678 79084305 PRIMA4_LTR 623 - 0 623 67270 94 5 9 123 71 9 13 0 56 56 4 5 145 3 0 113 chain 157892 chrX 155270560 + 79095458 79097294 L1PA4 6152 - 9 1860 23609 87 0 1 537 0 10 195 5 9 1012 chain 72604 chrX 155270560 + 79097294 79098158 L1PA5 6144 + 5265 6130 47137 725 7 0 9 6 13 35 0 1 82 chain 206219 chrX 155270560 + 79098169 79100800 L1PA7 6471 + 3817 6470 18774 63 0 2 19 1 2 25 1 0 81 1 5 564 0 1 89 0 4 30 5 4 112 0 4 133 1 0 24 7 6 258 0 1 375 7 6 57 6 13 647 1 3 30 0 1 94 chain 425117 chrX 155270560 + 79104914 79110496 HERVL-int 5654 + 0 5654 9416 644 6 5 268 0 1 52 0 2 152 12 8 538 0 2 5 25 23 121 15 15 82 5 7 765 1 0 4 0 1 87 54 67 18 14 38 171 6 0 139 0 1 571 7 24 155 0 2 580 0 2 101 9 11 345 7 11 325 0 11 116 0 2 182 chain 33772 chrX 155270560 + 79110496 79110941 MLT2A1 477 + 0 477 77982 169 4 1 212 3 2 9 5 41 43 chain 22988 chrX 155270560 + 79124658 79125034 L1PA14 3548 + 90 466 115680 50 3 0 64 6 5 8 1 0 20 2 1 16 16 14 23 10 8 15 0 10 142 chain 79078 chrX 155270560 + 79140858 79141881 MER11A 1151 - 0 1151 44017 167 0 1 16 1 0 42 0 9 33 17 48 266 0 1 29 0 1 94 0 1 149 4 0 65 10 0 73 1 100 56 chain 4992 chrX 155270560 + 79151697 79151754 L1PREC2 3366 - 1414 1471 195232 57 chain 91152 chrX 155270560 + 79151801 79152873 MER11C 1089 + 0 1073 39248 586 12 13 474 chain 3450 chrX 155270560 + 79152900 79152943 L1PB2 3958 + 2781 2824 216204 43 chain 304979 chrX 155270560 + 79157181 79160540 L1PA3long 6157 + 2791 6151 13209 2592 0 1 767 chain 150689 chrX 155270560 + 79174118 79175968 L1PA7 6471 + 4599 6464 24516 65 0 4 595 3 0 5 4 10 342 0 4 44 0 8 33 5 6 360 4 0 235 5 8 131 4 0 15 chain 3897 chrX 155270560 + 79176577 79176891 L1PB1 5432 - 32 318 208894 7 1 0 22 2 1 10 72 58 7 1 0 15 6 5 14 112 104 13 6 5 4 1 0 21 chain 69842 chrX 155270560 + 79179362 79181818 L1PA8 5853 + 1559 4025 13343 349 0 1 213 0 1 45 0 1 113 6 8 506 0 1 85 1 0 52 12 16 270 0 1 804 chain 553259 chrX 155270560 + 79182296 79188325 L1PA2 6032 + 0 6032 1042 197 0 1 3602 0 1 34 0 2 672 1 0 1523 chain 46694 chrX 155270560 + 79188325 79189967 L1PA8 5853 + 4210 5851 13343 39 9 10 190 0 3 171 1 2 385 6 4 73 0 1 305 0 2 169 1 0 31 0 7 6 9 0 60 23 21 7 1 0 4 0 1 39 2 1 19 1 0 91 chain 14042 chrX 155270560 + 79193301 79193597 L1PA14 3548 - 104 407 144416 30 1 0 16 1 0 6 2 1 11 2 0 37 20 32 20 1 2 6 1 0 16 1 5 15 24 21 5 1 0 80 chain 14149 chrX 155270560 + 79204095 79204442 L1PB1 5432 + 5118 5430 144043 20 11 8 12 5 1 9 6 4 48 18 16 32 1 0 11 2 1 16 1 0 4 23 12 15 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 2 1 13 1 0 5 1 0 7 chain 39999 chrX 155270560 + 79211389 79211941 LTR17 781 + 255 781 69320 44 10 0 27 0 1 68 36 18 360 0 1 7 chain 365427 chrX 155270560 + 79213654 79217954 HERV17-int 4347 + 12 4347 11220 14 2 1 51 1 0 34 2 0 27 1 0 156 5 0 79 0 2 46 0 1 250 1 2 203 0 1 290 0 3 154 0 16 172 0 1 699 0 12 22 0 1 894 1 0 4 0 1 164 0 4 234 4 5 71 0 1 316 0 5 10 5 0 329 0 1 59 chain 27163 chrX 155270560 + 79218268 79218593 LTR17 781 + 0 324 95712 119 0 9 171 10 0 25 chain 16758 chrX 155270560 + 79236469 79236868 L1PA15 4387 - 22 401 136239 8 1 0 29 9 7 5 2 0 46 35 27 26 74 68 13 7 6 26 1 0 13 0 1 104 chain 276482 chrX 155270560 + 79240742 79243847 L1PA3long 6157 - 7 3112 14843 762 0 2 1044 2 0 1297 chain 57211 chrX 155270560 + 79243864 79244503 L1HS 6032 + 1889 2528 54395 639 chain 94714 chrX 155270560 + 79255646 79256711 L1PA3long 6157 - 5 1071 38161 577 5 6 483 chain 55112 chrX 155270560 + 79256711 79257338 L1P1 4361 + 3707 4328 55529 71 4 0 372 1 0 155 1 0 23 chain 5801 chrX 155270560 + 79260704 79260781 L1MD2 1676 + 1578 1654 187136 27 1 0 49 chain 10250 chrX 155270560 + 79261178 79261291 L1PA4 6152 - 778 891 159369 113 chain 69914 chrX 155270560 + 79261291 79262065 L1PA4 6152 + 5379 6152 48427 284 1 0 489 chain 14988 chrX 155270560 + 79285462 79285714 MER1B 344 - 5 252 141360 55 17 18 58 11 10 63 3 0 5 0 3 26 5 0 9 chain 55551 chrX 155270560 + 79297234 79298131 L1PB1 5432 - 563 1455 55386 31 36 45 158 4 6 8 1 0 96 0 4 61 4 0 241 20 9 44 73 69 120 chain 30364 chrX 155270560 + 79298132 79298576 MER9a3 513 + 0 443 83751 15 2 5 91 0 1 12 0 5 90 19 0 13 5 14 10 4 3 175 0 1 8 chain 333238 chrX 155270560 + 79299325 79303279 HERVK9-int 4720 + 334 4720 12078 137 0 1 538 0 1 333 29 457 262 0 3 1232 1 2 12 2 1 1051 1 0 356 chain 36941 chrX 155270560 + 79303292 79303771 MER9a3 513 + 15 513 73600 96 12 13 134 0 17 158 1 2 78 chain 48657 chrX 155270560 + 79312509 79313066 L1PA4 6152 - 9 570 59988 120 0 1 13 0 1 228 0 1 155 0 1 41 chain 506773 chrX 155270560 + 79316057 79322190 L1PA6 6164 - 8 6164 6416 763 0 2 717 0 1 114 0 1 851 0 2 778 0 1 600 0 1 569 1 2 130 0 7 43 17 19 109 2 0 462 5 4 292 1 2 176 11 10 97 17 16 8 0 8 352 5 6 13 chain 143193 chrX 155270560 + 79330043 79331669 L1PA5 6144 + 4514 6144 25616 757 0 4 714 1 3 5 2 0 147 chain 33220 chrX 155270560 + 79350137 79350621 MER4A1_ 611 + 0 465 78850 77 0 1 216 17 0 62 2 0 30 30 29 50 chain 215728 chrX 155270560 + 79350621 79353128 L1PA6 6164 + 3648 6161 18125 48 0 1 794 1 2 185 0 1 211 0 1 1111 1 4 4 1 0 151 chain 121240 chrX 155270560 + 79369503 79371129 THE1B-int 1605 + 0 1605 30623 360 35 0 4 20 0 68 0 25 24 38 41 176 0 1 4 0 1 548 0 1 234 0 1 51 0 2 64 chain 91715 chrX 155270560 + 79379378 79380731 L1MA2 4263 - 158 1671 39058 36 2 0 10 12 5 88 1 0 7 2 1 152 56 222 10 0 1 7 1 0 269 0 1 52 12 13 68 6 7 202 0 1 41 0 2 135 0 1 130 2 0 52 chain 142849 chrX 155270560 + 79385627 79387317 L1PA6 6164 - 2 1704 25678 33 0 1 301 5 6 499 0 4 692 0 1 121 0 5 39 chain 49255 chrX 155270560 + 79404927 79405668 L1PB 1623 - 48 764 59546 22 43 29 9 1 0 13 5 1 13 10 6 28 2 1 7 1 0 138 2 0 207 0 2 240 chain 5477 chrX 155270560 + 79405683 79405810 L1PB1 5432 + 5309 5427 190240 14 15 12 11 2 0 18 0 1 5 1 0 21 1 0 13 2 1 14 2 0 8 chain 555413 chrX 155270560 + 79406801 79412952 L1PA3long 6157 - 0 6153 781 977 0 1 658 0 1 4516 chain 15959 chrX 155270560 + 79424282 79424462 L1P1 4361 + 2505 2685 138483 180 chain 74053 chrX 155270560 + 79424478 79425301 L1PA4 6152 + 5328 6151 46485 823 chain 95572 chrX 155270560 + 79428380 79430459 L1PB1 5432 - 10 1520 37939 18 1 0 13 8 7 14 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 15 1 0 44 1 0 18 18 17 34 2 0 9 7 3 10 1 0 4 6 4 20 547 18 79 9 11 104 7 20 38 0 1 215 22 9 74 1 6 85 1 3 11 6 0 80 0 1 148 1 0 216 17 17 17 0 3 6 19 5 39 chain 40631 chrX 155270560 + 79428744 79429221 HERV1_LTRc 486 - 0 482 68398 10 0 4 383 0 1 84 chain 58482 chrX 155270560 + 79442007 79442700 L1PA7 6471 - 1 693 53710 243 1 0 449 chain 159067 chrX 155270560 + 79443045 79444807 L1PA3long 6157 - 0 1762 23455 323 0 1 9 1 0 1189 1 0 104 0 1 135 chain 119412 chrX 155270560 + 79445274 79446783 L1P3 4156 + 2630 4139 31261 5 2 0 68 0 4 131 16 16 213 0 1 419 1 0 80 0 3 27 8 6 504 2 0 7 2 1 24 chain 8027 chrX 155270560 + 79448664 79448769 L1MB2 1706 - 1286 1393 170891 58 0 2 47 chain 112614 chrX 155270560 + 79450747 79452115 L1PA7 6471 + 5106 6466 33498 487 0 1 20 22 13 76 1 0 184 0 1 578 chain 6805 chrX 155270560 + 79460906 79460994 LTR9 672 + 2 89 178908 15 1 0 72 chain 49073 chrX 155270560 + 79461024 79461601 MER11D 897 - 0 897 59693 81 13 333 483 chain 121828 chrX 155270560 + 79469982 79471338 SVA_C 1631 + 16 1616 30435 4 0 1 647 2 159 116 0 87 464 1 0 122 chain 6265 chrX 155270560 + 79494912 79494988 L1P4b 1366 - 222 298 183047 76 chain 4634 chrX 155270560 + 79512298 79512356 MSTA 426 + 0 56 199253 20 2 0 36 chain 30115 chrX 155270560 + 79527660 79528387 LTR3B 427 + 0 423 84431 78 2 0 83 1 0 109 308 0 50 9 15 23 15 16 49 chain 525978 chrX 155270560 + 79528929 79535378 L1PA7 6471 + 0 6466 4590 124 0 2 114 25 24 148 1 0 235 4 5 6 1 0 9 0 4 184 0 3 457 8 0 24 3 6 442 0 1 328 0 8 188 26 22 119 0 3 103 0 1 6 0 4 66 8 0 65 15 1 353 0 1 108 4 1 412 0 4 16 0 1 1213 0 4 441 0 1 262 0 1 42 3 2 38 2 12 10 1 6 522 0 1 313 chain 57722 chrX 155270560 + 79549906 79550544 L1PA4 6152 - 1189 1827 54080 638 chain 106543 chrX 155270560 + 79550544 79551729 L1PA4 6152 + 4966 6152 35111 216 0 1 825 0 1 138 1 0 5 chain 44008 chrX 155270560 + 79567632 79568193 LTR19B 566 + 0 566 64196 94 0 5 83 0 1 115 1 0 80 0 1 45 1 0 22 20 22 90 2 0 8 chain 17752 chrX 155270560 + 79573281 79573487 LTR19B 566 + 0 206 133560 206 chain 5420 chrX 155270560 + 79574689 79574776 MER82 654 + 56 160 190802 42 11 28 34 chain 515086 chrX 155270560 + 79574777 79581068 L1PA6 6164 + 2 6151 5662 355 0 1 151 2 1 205 11 0 125 0 1 413 0 2 124 0 2 76 12 7 517 146 0 133 1 0 282 0 4 475 0 1 306 4 5 82 0 1 346 0 2 1376 0 2 72 0 1 320 0 1 728 3 6 26 chain 8714 chrX 155270560 + 79576814 79576906 L1PA5 6144 + 6039 6131 167120 92 chain 17583 chrX 155270560 + 79587950 79588147 L1PA7 6471 + 6255 6452 134045 197 chain 25086 chrX 155270560 + 79599599 79600084 L1PA15 4387 - 31 493 104376 28 25 18 40 20 17 33 42 36 54 1 0 9 1 0 19 1 0 99 5 2 39 6 7 22 1 0 26 1 0 13 chain 457586 chrX 155270560 + 79602173 79607993 L1PA8 5853 - 0 5803 8489 91 0 2 5 3 0 11 1 0 51 6 5 9 1 0 71 2 0 32 0 1 11 1 0 358 3 2 117 0 3 26 0 5 44 3 0 539 6 0 23 0 3 50 10 19 321 0 8 630 17 22 12 3 0 370 0 1 54 0 5 14 0 4 26 2 0 419 0 4 405 2 1 448 0 1 73 0 5 404 4 0 204 5 6 258 0 1 76 0 4 203 2 1 75 30 18 122 1 3 66 67 30 10 2 0 21 chain 82009 chrX 155270560 + 79612274 79613186 L1PA4 6152 - 13 927 42754 834 0 2 78 chain 63743 chrX 155270560 + 79613186 79613906 L1PA4 6152 + 4513 5232 51126 122 1 0 59 0 1 4 1 0 533 chain 41356 chrX 155270560 + 79614503 79614988 L1PA7 6471 + 5660 6149 67464 213 0 4 272 chain 24939 chrX 155270560 + 79614988 79615282 L1PA7 6471 + 6163 6457 105115 294 chain 8210 chrX 155270560 + 79616846 79616947 MER82 654 - 552 653 169892 101 chain 476734 chrX 155270560 + 79632747 79638626 L1PA6 6164 - 10 6164 7840 1222 43 0 8 0 1 282 1 413 76 0 1 230 81 0 293 10 0 327 7 8 804 0 1 162 0 1 634 0 2 243 1 0 163 0 2 189 0 4 377 11 0 57 0 4 31 0 1 67 35 27 14 2 1 43 0 1 54 2 0 225 0 1 185 chain 238688 chrX 155270560 + 79639367 79642065 L1PA5 6144 + 3435 6144 16843 172 10 0 797 0 4 1469 6 23 244 chain 30333 chrX 155270560 + 79647996 79648314 AluYb8 318 - 0 318 83838 318 chain 152034 chrX 155270560 + 79651773 79653482 SVA_D 2077 - 0 2071 24330 535 0 225 224 0 102 30 0 1 10 12 54 575 0 1 285 9 0 29 chain 544749 chrX 155270560 + 79660741 79666745 L1PA3long 6157 + 0 6149 2103 153 0 1 101 0 1 324 0 4 193 1 129 2354 0 2 5 1 3 1100 0 3 508 0 4 1264 chain 3849 chrX 155270560 + 79668887 79668930 THE1A-int 1579 + 1531 1574 209657 43 chain 27914 chrX 155270560 + 79682299 79682653 THE1A 353 + 0 353 93306 109 2 1 243 chain 33202 chrX 155270560 + 79691891 79692283 L1PA7 6471 - 4 394 78880 6 4 0 152 7 8 218 0 1 5 chain 11739 chrX 155270560 + 79708016 79708200 L1PA8 5853 - 0 174 153303 38 10 2 53 1 0 19 2 1 44 1 2 6 1 0 9 chain 25596 chrX 155270560 + 79708902 79709208 AluY 311 + 8 309 101746 125 6 1 175 chain 505942 chrX 155270560 + 79717688 79724211 L1PA7 6471 + 5 6467 6472 325 3 0 6 1 4 66 2 3 775 23 23 22 0 1 126 2 0 6 3 4 264 0 1 291 1 0 91 49 1 244 4 3 377 9 10 247 0 3 6 0 1 178 0 1 283 0 1 63 0 1 81 24 25 74 9 8 92 32 5 284 1 0 4 6 5 5 1 0 295 1 2 6 0 2 66 0 1 133 0 6 239 0 1 300 0 1 40 0 2 89 4 0 159 0 1 253 0 3 10 0 1 4 4 0 789 9 0 6 1 10 25 2 0 8 chain 119270 chrX 155270560 + 79724559 79727225 HERVK22-int 3844 + 1764 3810 31306 385 5 6 72 0 1 15 15 14 10 0 7 6 3 0 51 0 1 56 7 27 179 59 60 393 10 9 62 1 0 6 1 0 20 1 0 34 1 0 20 2 0 39 15 10 32 23 38 4 1 0 12 104 77 20 11 7 28 1 0 4 809 193 88 1 0 60 chain 248296 chrX 155270560 + 79727790 79731101 L1P3 4156 - 806 4153 16347 146 7 18 208 0 2 336 0 2 311 8 10 92 8 12 52 0 1 119 10 9 85 0 1 437 7 8 149 8 6 5 0 2 40 0 1 35 0 4 17 6 10 81 9 7 67 1 2 5 1 0 490 0 1 154 16 18 51 0 1 33 6 5 30 3 2 8 0 1 13 13 12 122 1 5 121 chain 151002 chrX 155270560 + 79745259 79747078 L1PA7 6471 - 6 1906 24479 6 4 0 393 0 1 265 8 97 82 2 0 272 1 0 112 7 6 282 1 0 384 chain 64578 chrX 155270560 + 79757051 79757749 L1PA3long 6157 + 5459 6157 50764 698 chain 37937 chrX 155270560 + 79763410 79763955 MLT2A2 560 - 0 560 72225 6 0 4 136 6 17 154 0 2 5 47 45 14 1 0 28 0 1 148 chain 12131 chrX 155270560 + 79767952 79768242 LTR19C 757 - 409 684 151691 26 12 13 64 9 18 29 10 0 8 47 39 42 5 2 10 8 4 20 chain 5985 chrX 155270560 + 79769770 79769875 LTR25-int 2185 - 1688 1784 185387 22 7 5 53 7 0 16 chain 283034 chrX 155270560 + 79773525 79777118 L1P3 4156 - 472 4154 14466 118 37 58 20 2 0 100 0 7 119 0 28 603 16 13 121 0 2 9 1 0 357 0 2 31 0 1 537 2 0 18 4 0 249 13 17 177 0 7 152 8 4 46 1 2 431 0 30 16 3 0 90 1 0 58 15 14 17 1 0 108 0 8 112 chain 202974 chrX 155270560 + 79778309 79783228 HERVL-int 5654 + 2977 5654 18997 320 0 2 667 0 2 135 11 5 51 17 4 83 27 28 329 0 1 56 0 1 205 1 2 226 17 3 262 0 1 4 2232 11 48 18 21 210 chain 81703 chrX 155270560 + 79780816 79781864 L1PA8A 6298 - 7 1063 42890 100 8 6 125 4 5 91 1 0 4 0 1 385 0 1 75 1 9 254 chain 85841 chrX 155270560 + 79781872 79782931 L1PA8A 6298 + 4172 5236 41216 266 18 18 365 0 4 257 0 1 153 chain 168521 chrX 155270560 + 79789702 79791500 L1HS 6032 - 938 2736 22221 1798 chain 87078 chrX 155270560 + 79791500 79792434 L1HS 6032 + 5098 6032 40469 934 chain 107973 chrX 155270560 + 79818332 79819541 L1PA4 6152 + 4934 6143 34728 1209 chain 442874 chrX 155270560 + 79836410 79842108 L1PA8 5853 - 62 5745 8963 25 7 6 16 1 0 43 14 13 9 2 1 70 3 1 43 1 0 36 0 3 154 5 1 6 13 0 119 0 1 10 0 1 149 0 2 73 5 4 196 1 0 137 6 0 1360 0 4 87 10 0 102 3 1 203 3 2 42 4 6 99 4 0 297 0 1 138 0 1 404 8 14 349 5 10 244 3 4 184 6 5 80 0 2 285 1 0 5 4 5 42 13 14 88 2 3 282 0 4 197 chain 157411 chrX 155270560 + 79845908 79847746 SVA_D 2077 + 55 2064 23676 826 40 0 12 0 83 27 1 52 175 0 78 44 1 0 36 0 1 4 18 17 654 chain 264841 chrX 155270560 + 79849026 79852056 L1PA4 6152 + 3114 6151 15448 833 1 2 99 0 1 1249 0 4 68 2 3 778 chain 166489 chrX 155270560 + 79853291 79855334 L1P1 4361 - 20 4359 22460 12 2 1 23 1 0 155 1 0 471 1 0 112 4 0 27 0 2283 92 0 6 434 0 1 191 1 0 398 5 19 47 15 16 51 chain 17467 chrX 155270560 + 79856278 79856534 L1PA8 5853 + 5593 5843 134338 15 2 0 70 12 10 52 2 1 19 3 2 81 chain 25192 chrX 155270560 + 79859800 79860186 LTR7B 505 + 0 505 103789 105 0 10 56 13 81 37 2 1 14 9 50 16 0 4 67 14 13 26 2 0 25 chain 279412 chrX 155270560 + 79874104 79878292 L1PA10 4194 - 34 3944 14667 10 1 0 34 3 0 35 1 0 88 15 28 424 0 1 159 0 1 7 10 9 79 3 4 315 3 4 211 6 5 52 300 31 35 17 18 397 3 4 347 5 11 91 1 0 112 9 20 337 0 1 5 2 1 186 0 3 204 10 9 107 0 1 12 0 2 270 5 2 85 1 0 8 7 0 13 1 0 7 0 3 9 1 0 7 1 0 21 2 0 10 23 20 7 19 0 4 4 0 8 1 0 14 2 0 22 chain 14482 chrX 155270560 + 79899053 79899400 L1PB1 5432 + 5107 5422 142941 9 1 0 22 1 0 6 1 0 12 2 0 3 2 0 9 15 13 31 11 9 10 7 6 45 1 0 14 23 12 14 13 10 16 2 0 22 1 0 22 1 0 12 1 0 18 chain 532930 chrX 155270560 + 79906094 79912221 L1PA5 6144 + 3 6139 3861 72 0 8 1352 6 8 78 0 1 4 1 0 1413 0 2 337 1 0 1021 4 0 569 0 1 232 0 1 341 0 1 447 3 2 246 chain 32900 chrX 155270560 + 79914330 79914703 L1PA5 6144 + 5766 6132 79367 231 7 0 135 chain 13563 chrX 155270560 + 79941610 79941763 L1PA5 6144 + 5830 5983 146121 153 chain 13425 chrX 155270560 + 79941763 79941924 L1PA5 6144 + 5984 6137 146599 76 8 0 77 chain 9157 chrX 155270560 + 79956294 79956412 MER2 342 + 143 262 164777 110 0 1 8 chain 137921 chrX 155270560 + 79967654 79969204 SVA_D 2077 + 0 2077 26493 7 1 0 4 0 17 15 1 26 473 0 40 308 0 396 28 0 1 37 0 49 676 chain 21983 chrX 155270560 + 79991048 79991320 AluY 311 + 11 300 120301 28 0 1 4 6 21 67 0 1 167 chain 248171 chrX 155270560 + 79996421 79999212 L1PA4 6152 - 11 2819 16355 144 0 1 1342 1 15 317 0 2 987 chain 494091 chrX 155270560 + 80022140 80028125 L1PA6 6164 + 0 6162 7165 280 0 1 4 1 0 175 2 3 40 0 61 164 0 1 65 0 16 90 0 1 177 22 1 314 4 0 34 4 9 10 1 0 887 10 0 767 1 0 90 6 1 205 1 0 1086 0 2 481 0 134 913 6 7 135 2 0 8 chain 26989 chrX 155270560 + 80036670 80036994 LTR17 781 - 455 781 96319 94 0 2 230 chain 14031 chrX 155270560 + 80038418 80038598 L1MA3 4352 + 3343 3520 144455 37 4 1 139 chain 6456 chrX 155270560 + 80066783 80066883 Tigger4b 360 - 0 99 181596 46 12 11 42 chain 449565 chrX 155270560 + 80077724 80083421 L1PA8 5853 - 5 5745 8778 71 0 1 16 1 0 12 9 8 52 1 0 9 3 2 16 0 1 52 2 0 44 9 8 547 0 3 668 1 0 4 0 1 173 0 3 326 0 9 221 5 7 169 0 3 64 0 7 129 0 1 159 0 1 37 0 12 799 0 2 119 0 3 70 0 1 154 0 1 334 2 1 5 0 3 9 1 2 349 4 5 157 0 3 140 0 1 32 0 1 24 1 2 128 1 3 7 1 0 349 17 6 127 9 8 4 0 1 54 chain 24430 chrX 155270560 + 80098331 80098615 AluY 311 + 2 287 107911 124 0 1 160 chain 129165 chrX 155270560 + 80113012 80114476 L1PA5 6144 - 0 1461 28274 113 1 0 140 2 0 597 1 0 399 0 1 211 chain 53494 chrX 155270560 + 80114480 80115077 L1PA5 6144 + 4073 4670 56685 597 chain 137252 chrX 155270560 + 80118628 80120565 L1PA11 4918 - 444 2351 26598 21 0 2 42 24 21 61 2 0 18 9 23 40 6 7 331 0 1 4 1 0 169 36 4 33 0 1 30 2 0 42 19 8 119 2 0 5 0 2 63 5 4 705 1 3 82 5 6 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80226486 L1PA4 6152 - 0 658 54068 6 0 5 85 0 1 561 chain 530983 chrX 155270560 + 80232368 80238303 L1PA3long 6157 - 1 6157 4082 252 0 87 3103 0 5 1805 0 128 623 0 1 152 chain 37443 chrX 155270560 + 80243776 80244265 MER9a3 513 - 0 513 72899 78 0 1 97 8 29 52 1 0 74 3 4 163 0 2 13 chain 23242 chrX 155270560 + 80255768 80256038 AluSc 308 - 27 297 114478 270 chain 29694 chrX 155270560 + 80270004 80270467 L1PA8 5853 + 5397 5853 85852 167 1 0 46 14 12 53 42 40 25 2 1 19 1 0 93 chain 31468 chrX 155270560 + 80274472 80274904 L1PA8 5853 - 0 428 81695 92 6 5 15 2 1 49 1 0 12 1 0 71 2 0 46 1 0 38 0 3 96 chain 537394 chrX 155270560 + 80282333 80288472 L1PA4 6152 + 0 6140 3256 485 1 0 95 1 0 128 28 25 257 0 1 1883 0 1 723 0 1 749 0 4 1650 1 0 138 chain 54965 chrX 155270560 + 80289269 80289879 L1PA5 6144 - 14 624 55728 610 chain 36531 chrX 155270560 + 80289888 80290303 L1PA5 6144 + 5126 5544 74197 298 0 3 117 chain 2583 chrX 155270560 + 80292637 80292669 L1PA4 6152 + 3572 3604 231863 32 chain 52437 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11 9 30 chain 55353 chrX 155270560 + 80387161 80388012 L1PA13 3608 + 2668 3518 55487 56 1 2 361 32 34 11 5 4 13 13 12 112 2 0 56 9 8 21 1 0 33 4 3 49 2 0 5 2 0 34 0 4 11 4 7 14 chain 483670 chrX 155270560 + 80398877 80405115 L1PA7 6471 + 5 6455 7602 135 114 113 76 11 181 51 6 11 466 0 1 34 7 8 297 9 9 18 0 2 6 15 15 445 0 1 115 0 1 61 7 0 30 0 1 156 0 1 22 0 2 367 2 3 275 0 1 187 0 4 889 0 1 16 1 2 229 8 23 799 0 2 562 0 1 76 12 14 371 1 0 4 0 1 163 0 9 57 3 1 135 chain 70441 chrX 155270560 + 80406667 80407437 L1PA3long 6157 - 1220 1990 48188 770 chain 110065 chrX 155270560 + 80407437 80408654 L1PA3long 6157 + 4940 6157 34202 1217 chain 28515 chrX 155270560 + 80415904 80416319 L1PA8 5853 - 38 446 91116 48 8 7 19 13 12 38 8 7 5 1 0 69 2 0 46 1 0 157 chain 441016 chrX 155270560 + 80431324 80436702 L1PA6 6164 + 10 6161 9022 78 0 511 188 0 17 274 3 0 68 0 2 106 1 0 114 8 9 61 0 4 166 15 5 246 63 6 102 0 309 58 27 5 850 0 2 55 1 5 258 0 9 1800 0 4 509 0 1 176 1 3 150 chain 35811 chrX 155270560 + 80443976 80444387 L1PA5 6144 - 4 410 75116 9 5 0 397 chain 13381 chrX 155270560 + 80452338 80452565 THE1D 372 + 147 372 146781 19 27 27 22 0 1 7 4 0 136 2 3 10 chain 145951 chrX 155270560 + 80453873 80455540 L1PA6 6164 + 3652 5318 25176 51 3 0 1152 0 1 244 0 1 217 chain 34945 chrX 155270560 + 80455540 80455966 L1PA6 6164 + 5322 5763 76272 165 0 14 115 0 1 146 chain 34490 chrX 155270560 + 80455966 80456363 L1PA6 6164 + 5765 6162 76924 397 chain 8194 chrX 155270560 + 80466697 80466801 MLT2A1 477 + 0 103 169989 64 2 1 38 chain 16571 chrX 155270560 + 80474527 80474731 L1PBa 3878 + 1087 1292 136730 200 0 1 4 chain 100468 chrX 155270560 + 80477681 80478822 L1PA4 6152 - 9 1152 36638 478 0 1 4 8 7 359 1 0 286 0 3 5 chain 40083 chrX 155270560 + 80483651 80484217 MER4B 649 - 61 649 69206 26 1 0 27 4 1 109 21 5 217 10 52 151 chain 14183 chrX 155270560 + 80500152 80500346 L1PA7 6471 - 5 199 143941 17 1 0 32 1 0 92 1 8 20 5 0 25 chain 452305 chrX 155270560 + 80520711 80526878 L1PA7 6471 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0 24 2 0 14 1 0 5 2 0 15 49 35 31 10 9 12 6 7 48 3 1 10 5 1 10 6 5 9 1 0 16 298 15 37 0 1 195 0 17 37 7 4 178 24 17 74 1 2 43 13 18 15 10 6 154 11 8 69 0 1 4 13 12 240 9 7 236 2 0 21 0 1 4 1 0 99 6 5 284 1 5 45 0 1 182 42 41 23 chain 174999 chrX 155270560 + 80575177 80577143 L1PA5 6144 - 0 1970 21461 1649 0 4 317 chain 534660 chrX 155270560 + 80595391 80601405 L1PA3long 6157 - 1 6157 3633 16 0 6 205 0 2 302 0 1 589 1 0 388 0 5 956 0 1 422 2 1 571 0 1 1786 0 128 616 0 2 5 0 1 4 2 0 38 1 0 110 chain 28623 chrX 155270560 + 80605490 80605802 AluYa5 310 - 0 310 90638 184 2 0 126 chain 42805 chrX 155270560 + 80642158 80642709 L1P3 4156 - 17 621 65649 24 2 1 7 2 0 189 0 25 127 1 27 46 0 4 84 1 0 29 1 3 38 chain 131983 chrX 155270560 + 80692503 80694223 HERVL-int 5654 - 3936 5654 27638 311 8 9 280 10 9 272 1 2 66 10 7 762 chain 29250 chrX 155270560 + 80694290 80694670 MLT2A1 477 - 92 477 87792 61 1 0 124 0 1 25 1 5 26 0 1 142 chain 346696 chrX 155270560 + 80705434 80709918 L1P2 5180 + 663 5178 11702 36 0 1 39 28 7 41 0 15 242 0 1 4 1 0 170 0 8 124 14 16 73 1 2 241 0 2 22 1 0 34 0 2 782 0 1 190 0 1 104 0 8 133 5 4 223 1 0 26 1 0 289 0 9 473 0 1 219 0 2 42 0 1 416 0 4 317 0 1 100 1 0 47 1 0 38 1 0 4 chain 16263 chrX 155270560 + 80710637 80710834 L1PA7 6471 + 5852 6049 137572 197 chain 36514 chrX 155270560 + 80710834 80711253 L1PA7 6471 + 6050 6469 74221 419 chain 490342 chrX 155270560 + 80724989 80731087 L1PA6 6164 - 2 6164 7346 158 7 8 4 1 0 9 0 20 59 9 20 393 22 0 173 1 5 75 1 2 350 0 2 111 10 0 124 1 0 576 0 1 103 0 1 435 4 3 72 1 2 266 0 1 64 0 10 323 1 0 128 0 10 109 1 4 1293 1 0 341 0 4 99 0 17 100 0 1 119 1 0 47 0 2 56 0 12 128 1 0 59 2 1 23 10 12 27 1 0 4 0 1 195 chain 3555 chrX 155270560 + 80750406 80750475 L1MA10 1535 - 32 87 214466 10 2 0 26 12 0 19 chain 53411 chrX 155270560 + 80763553 80764179 L1PA7 6471 - 1289 1916 56684 193 4 5 429 chain 97714 chrX 155270560 + 80764179 80765765 L1PA7 6471 + 5203 6468 37362 49 20 15 152 0 1 65 0 1 135 1 0 79 0 2 10 0 3 40 313 0 29 13 11 124 18 10 373 6 7 159 chain 7749 chrX 155270560 + 80790644 80790740 L1PA15 4387 - 3287 3383 172609 96 chain 2769 chrX 155270560 + 80797454 80797506 L1MA7 2200 - 94 142 229201 19 9 5 24 chain 81152 chrX 155270560 + 80798822 80799849 MER11A 1151 + 0 1151 43111 55 0 99 52 1 3 85 0 2 29 0 2 352 0 1 159 1 0 11 0 23 44 0 1 181 7 3 10 2 1 38 chain 73687 chrX 155270560 + 80816179 80817052 MER11D 897 + 0 897 46687 14 0 1 578 1 24 280 chain 27111 chrX 155270560 + 80839222 80839675 MLT2A2 560 - 0 560 95900 54 0 1 6 18 17 65 1 108 5 0 2 82 56 54 166 chain 12596 chrX 155270560 + 80841916 80842059 MLT2A2 560 - 391 534 149859 143 chain 225365 chrX 155270560 + 80845831 80849063 L1P1 4361 - 20 2610 17566 12 2 1 23 1 0 157 1 0 645 0 1 214 642 0 700 0 1 235 1 2 599 chain 56594 chrX 155270560 + 80846900 80847526 L1PA2 6032 - 2 627 54786 23 1 0 602 chain 123879 chrX 155270560 + 80849063 80850498 L1PA4 6152 + 4703 6143 29711 290 7 0 6 0 7 265 0 5 160 1 0 24 0 1 682 chain 39723 chrX 155270560 + 80857665 80858160 L1P1 4361 - 1190 1685 69722 495 chain 106740 chrX 155270560 + 80858160 80859479 L1PA7 6471 + 5138 6464 35049 454 2 7 21 2 1 80 0 2 595 17 18 148 chain 14687 chrX 155270560 + 80866579 80866882 L1PB1 5432 - 14 288 142301 14 1 0 12 1 0 22 1 0 24 3 1 13 1 0 5 3 1 14 10 1 11 2 0 4 1 0 16 1 0 44 1 0 15 2 1 49 21 15 12 chain 345366 chrX 155270560 + 80872082 80876618 HERVL-int 5654 + 619 5654 11748 27 4 472 63 0 4 5 4 0 256 5 6 49 18 6 98 0 4 115 7 9 79 0 1 5 1 0 66 0 4 101 7 11 25 11 9 67 2 0 14 0 1 236 0 10 190 1 0 519 7 15 456 0 2 53 4 12 43 0 1 4 7 6 236 0 1 199 1 0 1124 1 3 67 0 3 124 6 5 229 chain 18635 chrX 155270560 + 80876618 80876889 MLT2A2 560 + 0 270 131119 180 1 0 16 26 27 4 1 0 43 chain 8603 chrX 155270560 + 80886363 80886495 L1PA8 5853 + 5724 5853 167711 16 2 1 19 1 0 79 1 0 14 chain 35347 chrX 155270560 + 80925935 80926381 L1PB1 5432 + 4217 4664 75736 94 1 0 56 0 5 78 0 1 175 4 0 38 chain 4761 chrX 155270560 + 80927224 80927280 L1PB2 3958 - 120 176 197794 56 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80967110 80967228 L1PA3long 6157 - 2140 2258 158400 118 chain 191460 chrX 155270560 + 80967228 80969351 L1PA3long 6157 + 4024 6149 19917 942 0 1 1033 0 1 148 chain 28949 chrX 155270560 + 80989728 80990035 AluYa5 310 + 0 306 89222 132 1 0 174 chain 110930 chrX 155270560 + 80998675 80999991 L1P1 4361 + 7 1347 33956 521 0 4 28 0 4 498 0 1 64 0 15 205 chain 419132 chrX 155270560 + 81000000 81004807 L1PA4 6152 + 1362 6152 9555 749 31 7 6 0 2 393 0 1 650 0 1 1789 0 1 980 0 3 61 1 0 147 chain 120381 chrX 155270560 + 81026994 81028313 L1PA3long 6157 + 4835 6157 30911 1217 0 3 102 chain 117239 chrX 155270560 + 81030682 81032255 THE1B-int 1605 - 5 1604 32042 400 0 60 18 65 5 89 1 0 571 0 25 56 2 4 371 chain 6749 chrX 155270560 + 81044381 81044473 L1PB3 3668 - 3188 3279 179330 30 5 4 57 chain 447283 chrX 155270560 + 81047621 81052709 L1PA4 6152 + 1047 6143 8837 189 1 0 1268 0 4 1174 0 1 673 0 4 812 0 1 832 1 0 138 chain 42420 chrX 155270560 + 81053605 81054149 MLT2A2 560 + 1 560 66119 193 11 14 191 3 14 77 0 1 69 chain 48635 chrX 155270560 + 81061238 81061936 LTR30 714 - 2 714 60003 20 1 0 29 8 12 16 8 7 7 2 0 160 7 18 166 21 24 63 1 0 4 0 1 185 chain 17721 chrX 155270560 + 81064269 81064473 L1PA4 6152 + 5937 6141 133642 204 chain 8665 chrX 155270560 + 81066532 81066632 HERV30-int 1034 - 776 875 167401 58 1 0 41 chain 150819 chrX 155270560 + 81081839 81084008 L1PA7 6471 + 4424 6464 24496 201 1 0 68 1 0 419 0 4 264 4 0 242 0 2 20 320 2 72 0 3 53 0 4 349 14 199 133 3 0 5 chain 146957 chrX 155270560 + 81087989 81089611 L1PA3long 6157 + 4518 6142 25027 1018 0 2 604 chain 29706 chrX 155270560 + 81091149 81091657 MLT2A1 477 - 0 477 85806 37 95 57 179 0 1 23 0 1 9 4 1 106 19 27 36 chain 49711 chrX 155270560 + 81093223 81093783 L1PA4 6152 + 5252 5812 59225 49 0 1 402 1 0 108 chain 30401 chrX 155270560 + 81093783 81094121 L1PA4 6152 + 5813 6151 83680 338 chain 565885 chrX 155270560 + 81096652 81102683 L1HS 6032 + 0 6032 164 74 0 1 5957 chain 7548 chrX 155270560 + 81132344 81132442 THE1C 375 - 270 373 173886 60 0 5 38 chain 27801 chrX 155270560 + 81151755 81152128 MLT2A1 477 + 0 377 93690 84 1 0 56 1 2 18 8 12 205 chain 4044 chrX 155270560 + 81152149 81152193 Tigger1 2417 + 1726 1770 206750 44 chain 4586 chrX 155270560 + 81158180 81158270 L1PB3 3668 - 100 186 199791 39 3 1 21 5 4 8 1 0 13 chain 27828 chrX 155270560 + 81182773 81184194 L1PA15 4387 + 3579 4356 93593 45 8 9 131 464 152 17 1 0 86 36 29 50 482 159 10 0 4 42 2 0 13 6 2 28 chain 525454 chrX 155270560 + 81195836 81201868 L1PA4 6152 + 106 6143 4634 394 0 3 76 11 13 115 1 2 196 9 5 324 0 2 1084 1 0 815 0 1 2588 1 2 417 chain 7815 chrX 155270560 + 81207108 81207209 LTR8 732 - 558 664 172214 28 1 6 72 chain 126609 chrX 155270560 + 81219031 81220528 L1PA7 6471 - 1616 3123 28916 264 0 1 70 0 1 464 0 1 49 4 1 428 0 6 154 0 4 64 chain 120877 chrX 155270560 + 81220528 81221993 L1PA7 6471 + 4854 6467 30733 667 0 1 99 1 0 218 4 155 465 3 0 8 chain 61664 chrX 155270560 + 81225859 81226618 L1P3 4156 - 17 768 52052 24 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4 0 52 5 2 189 37 31 95 chain 112743 chrX 155270560 + 81268021 81269262 L1PA4 6152 + 4911 6152 33463 1241 chain 15390 chrX 155270560 + 81287336 81287634 MER61A 341 + 0 305 140233 71 1 0 19 43 43 78 36 44 50 chain 7935 chrX 155270560 + 81292622 81292718 L1PA15 4387 + 3209 3305 171417 96 chain 19646 chrX 155270560 + 81292744 81293020 L1PA8 5853 + 5583 5853 128264 25 2 0 70 2 1 12 1 0 49 5 4 16 1 0 93 chain 40786 chrX 155270560 + 81322554 81323111 MLT2A2 560 - 7 560 68195 47 0 1 4 1 0 88 5 16 73 16 1 323 chain 15148 chrX 155270560 + 81331536 81331720 PABL_B 668 + 440 628 140922 8 0 4 176 chain 87385 chrX 155270560 + 81359586 81360554 L1PA4 6152 - 9 977 40614 104 0 1 739 1 0 124 chain 43506 chrX 155270560 + 81365118 81365611 L1PA4 6152 - 1 494 64805 493 chain 66424 chrX 155270560 + 81375017 81375744 L1PA3long 6157 - 1 730 49903 5 0 2 722 chain 25006 chrX 155270560 + 81376072 81376374 L1PA5 6144 + 5834 6132 104751 43 5 1 254 chain 20094 chrX 155270560 + 81382266 81382488 L1PA2 6032 - 3 225 126847 222 chain 30467 chrX 155270560 + 81415519 81415836 AluYb8 318 + 0 317 83494 317 chain 8202 chrX 155270560 + 81423925 81424092 L1PREC2 3366 + 351 513 169947 27 8 0 26 18 17 33 10 14 45 chain 121883 chrX 155270560 + 81441389 81442954 L1PA8 5853 - 175 1762 30420 70 2 0 46 1 0 467 2 1 80 6 4 4 1 0 77 1 2 299 18 10 85 2 1 197 4 5 52 0 36 151 chain 280593 chrX 155270560 + 81454079 81457263 L1PA3long 6157 - 797 3971 14610 1379 27 3 718 0 4 11 6 14 540 0 1 346 0 1 157 chain 68531 chrX 155270560 + 81457263 81458044 L1PA3long 6157 + 5364 6157 48973 471 0 11 170 0 4 121 4 1 15 chain 113439 chrX 155270560 + 81459690 81461168 L1PA8A 6298 - 7 1517 33122 99 8 7 345 0 27 241 0 2 127 7 8 140 6 5 117 1 0 281 0 2 59 11 14 36 chain 139198 chrX 155270560 + 81461168 81462953 L1PA8A 6298 + 2889 4677 26263 18 0 1 445 15 12 33 2 1 14 0 4 30 0 3 115 1 0 256 1 0 4 0 1 44 4 3 96 1 0 420 0 2 286 chain 48514 chrX 155270560 + 81486592 81487242 THE1B-int 1605 + 0 672 60094 48 0 1 383 10 35 80 4 1 20 5 4 100 chain 50664 chrX 155270560 + 81520399 81520971 L1PA4 6152 + 5571 6143 58523 572 chain 26912 chrX 155270560 + 81564589 81564943 THE1A 353 - 1 353 96586 154 1 0 88 2 1 109 chain 211372 chrX 155270560 + 81581547 81584283 L1PA8 5853 + 3072 5815 18408 319 0 3 121 0 1 62 4 2 57 0 7 725 0 1 454 0 1 184 1 0 85 0 1 386 0 3 30 1 0 6 9 11 33 1 0 46 2 0 70 1 0 12 1 0 7 3 2 31 10 9 14 6 5 55 chain 27337 chrX 155270560 + 81589959 81590329 MER4A1 472 + 0 393 95153 213 9 30 18 4 5 83 0 1 43 chain 33744 chrX 155270560 + 81604395 81604827 THE1C-int 1605 - 1174 1605 78027 416 2 1 14 chain 65659 chrX 155270560 + 81611422 81612168 L1PA4 6152 - 1243 1990 50218 299 0 1 447 chain 108168 chrX 155270560 + 81612168 81613390 L1PA4 6152 + 4920 6143 34661 378 1 0 74 0 1 56 0 1 713 chain 44795 chrX 155270560 + 81615932 81616429 LTR2C 499 - 0 499 63297 64 1 0 260 0 3 172 chain 20967 chrX 155270560 + 81619559 81619905 MER51B 395 - 7 395 124047 79 8 20 44 1 0 26 1 0 4 4 5 83 15 27 34 7 26 40 chain 350548 chrX 155270560 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0 1 37 13 1 160 1 0 4 0 2 245 14 6 144 0 1 340 2 0 15 0 2 19 8 7 212 1 2 419 2 0 13 0 1 63 1 0 88 12 6 383 1 0 46 2 0 67 3 2 13 10 9 39 2 1 19 1 0 93 chain 47158 chrX 155270560 + 81710983 81711561 L1PA8 5853 + 5031 5608 61081 531 1 0 46 chain 9225 chrX 155270560 + 81711564 81711693 L1PA8 5853 + 5609 5736 164425 73 1 0 5 2 1 48 chain 3589 chrX 155270560 + 81711703 81711749 L1PA8 5853 + 5762 5807 213833 41 1 0 4 chain 15641 chrX 155270560 + 81723711 81723932 L1PA7 6471 - 5 217 139460 7 9 0 99 8 0 90 0 8 8 chain 50841 chrX 155270560 + 81725554 81726127 L1PA3long 6157 - 0 572 58403 15 3 0 139 0 1 183 0 1 233 chain 370538 chrX 155270560 + 81727545 81732309 L1PA7 6471 - 4 6471 11075 264 0 2 355 9 10 42 0 1 172 2 1 500 2 13 289 13 0 449 0 1 210 3 2 62 0 1 16 8 10 58 0 1 126 0 10 39 5 6 83 0 1 621 12 14 292 0 1 470 0 1 480 15 1697 167 chain 13029 chrX 155270560 + 81746184 81746497 L1PB1 5432 + 5114 5398 148135 24 1 0 7 1 0 12 47 41 21 1 0 12 6 5 45 1 0 15 2 0 6 16 6 16 2 0 8 1 0 14 2 0 14 0 1 9 1 0 22 1 0 6 chain 90367 chrX 155270560 + 81746649 81747615 L1HS 6032 - 1 967 39516 966 chain 49271 chrX 155270560 + 81747615 81748146 L1HS 6032 + 4522 5053 59074 531 chain 46892 chrX 155270560 + 81759773 81760379 L1PA8 5853 - 212 814 61313 33 2 0 44 1 0 167 0 2 307 2 0 6 1 0 43 chain 48033 chrX 155270560 + 81760380 81760979 L1PA8 5853 + 4442 5039 60455 566 3 1 30 chain 8430 chrX 155270560 + 81765232 81765431 MLT2D 439 + 43 246 168686 42 4 6 5 2 0 30 0 1 20 62 65 34 chain 9018 chrX 155270560 + 81766053 81766163 MER2 342 + 136 249 165506 66 0 3 44 chain 141497 chrX 155270560 + 81791198 81792817 L1PA4 6152 - 0 1636 25900 6 0 5 128 0 7 709 1 2 9 0 4 766 chain 7009 chrX 155270560 + 81797121 81797240 L1PB1 5432 - 32 136 177404 7 1 0 23 1 0 24 2 0 14 1 0 9 2 0 12 8 0 15 chain 537995 chrX 155270560 + 81801988 81808013 L1PA3long 6157 - 4 6151 3150 203 3 0 572 1 0 350 0 1 716 6 0 2367 0 1 1036 11 139 60 0 1 554 0 1 146 chain 13388 chrX 155270560 + 81808740 81808913 THE1D 372 + 200 372 146760 136 2 1 35 chain 11385 chrX 155270560 + 81812313 81812521 MER41-int 2638 + 184 378 154760 29 7 4 13 2 0 18 24 19 29 4 0 82 chain 27304 chrX 155270560 + 81820971 81821322 L1PA7 6471 - 2 354 95265 11 0 1 143 0 2 99 1 0 82 1 0 14 chain 53041 chrX 155270560 + 81831217 81831806 L1PA4 6152 - 9 598 56990 589 chain 316790 chrX 155270560 + 81833088 81837243 L1P3 4156 - 17 4156 12733 24 11 8 101 1 0 76 0 1 4 2 0 157 13 14 232 5 6 684 0 2 132 0 1 48 16 11 109 8 0 580 14 5 66 6 9 14 7 0 105 2 1 395 15 16 119 0 12 511 2 1 4 0 1 280 0 2 88 6 5 37 58 57 80 2 0 141 chain 24860 chrX 155270560 + 81838902 81839200 L1PA7 6471 + 6174 6469 105567 285 3 0 10 chain 5446 chrX 155270560 + 81846484 81846610 L1MA3 4352 - 0 117 190559 17 34 29 18 1 0 6 1 0 23 2 0 24 chain 133794 chrX 155270560 + 81872304 81873953 L1PA7 6471 - 3 1706 27261 257 0 1 324 0 1 152 12 15 97 2 0 6 4 5 113 0 47 495 1 0 109 0 4 77 chain 17067 chrX 155270560 + 81875381 81875574 L1PA3long 6157 + 5960 6153 135409 193 chain 38009 chrX 155270560 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81993212 LTR12C 1709 - 899 942 136555 43 chain 3526 chrX 155270560 + 81993238 81993280 LTR12C 1709 - 809 891 132282 28 0 40 14 chain 34553 chrX 155270560 + 82000775 82001248 LTR2B 499 + 9 499 76826 5 1 0 60 3 0 37 0 19 103 5 7 54 8 9 14 1 0 182 chain 29321 chrX 155270560 + 82002610 82003038 MER4E 760 - 0 760 87433 167 11 347 70 22 25 131 7 0 20 chain 36122 chrX 155270560 + 82011319 82011814 LTR10F 562 + 0 559 74737 38 0 2 67 1 85 40 25 0 32 4 5 283 0 2 5 chain 83960 chrX 155270560 + 82022046 82023158 MER11A 1151 - 0 1151 41922 30 6 10 112 17 18 26 2 0 18 1 2 16 0 1 54 10 43 12 0 1 118 5 6 145 0 1 94 0 1 149 4 0 64 1 0 120 0 2 108 chain 12904 chrX 155270560 + 82024385 82024717 L1PB1 5432 - 4 304 148611 6 2 0 17 2 1 13 4 3 18 1 0 24 2 0 14 1 0 5 2 0 14 46 32 45 1 0 17 1 0 38 2 4 9 2 0 9 5 1 14 3 2 8 1 0 6 chain 31666 chrX 155270560 + 82042825 82043277 THE1B-int 1605 + 0 406 81382 27 6 7 198 47 0 174 chain 483443 chrX 155270560 + 82043282 82049456 L1PA6 6164 + 0 6162 7612 449 19 0 118 1 0 220 0 17 99 0 4 9 0 1 5 1 0 517 7 9 594 1 0 11 19 15 177 26 0 80 12 0 864 1 2 80 0 3 42 0 1 189 0 2 195 5 3 350 0 1 8 0 1 123 0 1 85 0 3 84 0 4 277 1 0 135 0 2 93 0 1 262 1 2 53 13 8 41 0 9 69 0 4 376 5 7 457 chain 545199 chrX 155270560 + 82057809 82063948 L1PA3long 6157 - 0 6153 2049 20 1 0 307 0 1 5 0 2 195 0 9 47 1 2 262 1 0 672 1 0 563 0 1 1380 0 1 371 2 0 1363 1 5 947 chain 159294 chrX 155270560 + 82064870 82066883 L1PA7 6471 - 1577 3590 23429 106 10 1 109 0 4 195 0 1 38 0 1 25 0 2 306 0 2 118 0 2 431 0 4 63 10 4 328 1 0 273 chain 127521 chrX 155270560 + 82066883 82068435 L1PA7 6471 + 4917 6466 28650 279 8 1 222 0 1 200 0 4 834 1 0 8 chain 218591 chrX 155270560 + 82104646 82107272 L1PA5 6144 - 5 2629 17967 545 0 1 299 2 0 381 6 5 1393 chain 253348 chrX 155270560 + 82111487 82114246 L1PA2 6032 + 3275 6032 16065 2744 2 0 13 chain 29576 chrX 155270560 + 82116667 82117124 MLT2A1 477 - 0 477 86296 13 36 12 26 3 41 62 1 0 150 5 9 21 1 2 123 0 2 16 chain 5086 chrX 155270560 + 82137544 82137603 MER41B 635 + 482 542 194225 29 0 1 30 chain 16765 chrX 155270560 + 82146078 82146547 L1PB1 5432 + 5059 5396 136213 44 92 0 12 11 0 23 1 0 8 1 0 12 5 1 8 2 0 53 2 1 10 6 5 15 0 2 28 30 16 30 8 5 14 6 4 20 1 0 21 1 0 5 chain 19588 chrX 155270560 + 82151254 82151471 AluYk4 311 - 6 224 128412 130 0 1 87 chain 103804 chrX 155270560 + 82158304 82159442 L1PA4 6152 + 5014 6151 35771 1117 1 0 20 chain 33652 chrX 155270560 + 82176432 82176882 L1PA8 5853 - 0 444 78167 92 2 1 19 2 1 61 1 0 69 2 0 48 2 1 152 chain 37248 chrX 155270560 + 82200800 82201293 L1PA7 6471 - 6 505 73169 10 3 0 21 0 2 61 4 0 47 4 5 9 1 0 240 6 17 87 chain 325028 chrX 155270560 + 82201366 82205651 L1PA8A 6298 + 1984 6291 12387 404 0 2 120 23 1 423 4 0 47 0 1 369 5 6 14 0 1 12 0 6 8 15 19 33 3 4 27 1 0 54 0 1 323 12 13 229 9 30 60 6 7 165 0 1 75 14 10 28 0 2 554 0 1 109 3 2 112 0 1 64 0 1 169 0 3 84 0 1 424 0 4 235 2 0 5 0 2 41 chain 9308 chrX 155270560 + 82209344 82209450 L1PA3long 6157 - 810 916 163583 106 chain 74884 chrX 155270560 + 82209450 82210265 L1PA3long 6157 + 5342 6157 46071 815 chain 179386 chrX 155270560 + 82249535 82251591 L1PA5 6144 + 4073 6135 21042 12 0 2 375 0 3 856 0 1 813 chain 29649 chrX 155270560 + 82251603 82251958 L1P1 4361 + 3166 3521 86065 114 1 0 230 0 1 10 chain 60006 chrX 155270560 + 82256217 82256896 L1PA4 6152 + 5472 6151 52819 679 chain 23165 chrX 155270560 + 82258187 82258451 L1PA4 6152 + 5873 6139 114836 65 0 1 69 0 1 130 chain 3034 chrX 155270560 + 82262876 82262909 LTR9 672 - 241 274 224308 33 chain 9666 chrX 155270560 + 82272952 82273056 L1PA3long 6157 + 6053 6157 162267 104 chain 25744 chrX 155270560 + 82285071 82285356 L1PA4 6152 - 588 872 101110 155 1 0 129 chain 52875 chrX 155270560 + 82285356 82285940 L1PA4 6152 + 5567 6151 57088 584 chain 18335 chrX 155270560 + 82285984 82286219 MER11C 1089 - 852 1089 131975 32 5 7 198 chain 564218 chrX 155270560 + 82314613 82320645 L1HS 6032 - 0 6032 231 6032 chain 29827 chrX 155270560 + 82321028 82321377 LTR14A 344 - 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chain 15500 chrX 155270560 + 82631797 82631982 L1PA6 6164 + 5977 6162 139895 185 chain 196931 chrX 155270560 + 82635746 82638128 L1PA6 6164 + 3783 6156 19430 1248 0 8 8 12 4 353 1 0 87 0 2 157 16 15 59 8 0 103 2 0 314 0 1 14 chain 7861 chrX 155270560 + 82641940 82642042 L1PB1 5432 - 4259 4358 171929 66 3 0 33 chain 152639 chrX 155270560 + 82642088 82644408 L1PB1 5432 + 1157 5422 24274 74 4 3 95 9 7 60 5 15 91 1 0 4 0 1 4 0 8 244 6 24 76 5 3 117 0 1932 40 1 0 4 1 2 288 0 1 127 2 3 251 1 0 76 1 2 96 19 30 57 0 1 5 1 0 128 2 1 71 18 16 23 9 7 13 6 2 9 2 0 51 1 0 13 5 4 39 6 5 23 14 5 18 3 1 5 1 0 14 6 4 20 1 0 22 1 0 15 1 0 15 chain 516995 chrX 155270560 + 82662146 82668208 L1PA5 6144 + 0 6144 5482 513 0 22 160 55 57 413 5 34 1107 0 1 812 1 5 376 0 1 181 3 0 269 0 1 406 0 22 599 0 1 91 5 6 216 0 1 850 chain 7086 chrX 155270560 + 82670346 82670443 L1MA3 4352 + 4146 4242 176850 34 2 1 61 chain 5449 chrX 155270560 + 82676950 82677014 MSTA-int 1630 + 0 64 190542 64 chain 123249 chrX 155270560 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155270560 + 82748824 82749056 MER1B 344 + 103 338 141702 85 1 0 28 4 0 37 24 32 53 chain 9377 chrX 155270560 + 82796105 82796212 L1PA4 6152 - 1 108 163664 107 chain 565679 chrX 155270560 + 82797404 82803428 L1HS 6032 + 2 6030 178 5180 0 4 844 chain 372844 chrX 155270560 + 82816771 82821976 L1PA8 5853 - 0 5291 10999 76 23 22 11 1 0 40 43 41 55 2 0 44 1 0 42 2 3 58 1 0 13 0 7 364 2 0 123 0 1 293 0 1 699 10 40 216 0 3 213 5 6 281 0 7 107 1 0 4 4 5 190 0 1 402 10 14 10 5 0 91 5 4 104 0 1 13 0 1 13 0 1 215 0 2 391 0 1 680 0 1 73 63 75 21 0 18 14 154 163 17 chain 25203 chrX 155270560 + 82822671 82822944 L1PA2 6032 - 1008 1281 101864 273 chain 90603 chrX 155270560 + 82822944 82823933 L1PA2 6032 + 5040 6030 39428 46 0 1 943 chain 12521 chrX 155270560 + 82827157 82827301 L1PA5 6144 + 5999 6143 150157 144 chain 15561 chrX 155270560 + 82833423 82833610 L1PA4 6152 + 5958 6152 139698 50 0 1 52 0 1 79 0 5 6 chain 68908 chrX 155270560 + 82864491 82865879 L1PA11 4918 - 289 1319 48855 18 19 13 5 1 0 8 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551709 chrX 155270560 + 83005508 83011656 L1PA3long 6157 + 2 6157 1220 571 0 4 130 0 1 801 0 1 816 1 0 223 0 2 42 0 1 583 1 0 2819 0 1 4 1 0 156 chain 186135 chrX 155270560 + 83031607 83033889 L1PA7 6471 - 7 2300 20403 155 1 2 173 1 0 294 0 1 36 0 1 4 5 7 175 1 0 248 5 6 93 0 2 35 0 4 575 0 1 481 chain 289339 chrX 155270560 + 83033895 83045225 L1PA7 6471 + 2463 6465 14063 104 7 8 22 3 2 33 19 0 1084 0 1 216 0 2 67 1 0 152 7529 212 302 0 4 283 3 0 64 0 1 601 1 0 19 0 1 19 6 7 118 8 9 569 0 1 82 0 1 18 chain 77450 chrX 155270560 + 83037387 83038399 MER11A 1151 + 0 1147 44758 66 1 100 122 9 6 94 0 1 54 0 1 90 12 13 12 1 0 125 1 2 122 0 1 7 10 43 51 5 6 55 0 1 175 chain 22844 chrX 155270560 + 83053649 83053921 L1PA4 6152 + 5871 6143 116373 272 chain 2945 chrX 155270560 + 83055585 83055624 L1MA4 2864 + 2740 2778 226223 28 1 0 10 chain 162528 chrX 155270560 + 83093059 83094868 L1HS 6032 - 4222 6030 22996 1554 5 4 250 chain 387418 chrX 155270560 + 83094868 83099084 L1PA2 6032 + 1810 6026 10538 4216 chain 3462 chrX 155270560 + 83109074 83109112 MLT2A2 560 - 0 38 215973 38 chain 3930 chrX 155270560 + 83139563 83139621 L1PB1 5432 + 5365 5420 208416 5 1 0 21 1 0 13 1 0 16 chain 11748 chrX 155270560 + 83142771 83142899 L1PA5 6144 - 0 128 153263 128 chain 5637 chrX 155270560 + 83152072 83152145 L1P2 5180 + 1894 2002 188683 63 0 35 10 chain 44623 chrX 155270560 + 83163445 83163948 L1PA4 6152 - 13 516 63453 503 chain 196578 chrX 155270560 + 83163952 83166177 L1PA4 6152 + 3915 6152 19457 611 0 1 506 0 1 264 0 4 680 1 2 12 0 6 6 6 0 133 0 5 6 chain 66508 chrX 155270560 + 83169795 83170771 L1PB1 5432 - 12 951 49862 16 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 2 0 29 15 2 16 4 3 41 1 0 14 6 5 49 2 0 10 4 0 12 1 0 9 1 0 24 3 0 10 5 0 106 1 2 288 0 2 224 chain 83259 chrX 155270560 + 83172183 83173090 L1PA3long 6157 - 0 915 42227 849 0 4 12 0 4 46 chain 187955 chrX 155270560 + 83181365 83183762 L1PA8 5853 - 1 2393 20242 5 1 0 86 2 1 16 1 0 56 2 1 8 1 0 71 2 0 46 1 0 129 0 1 416 5 7 12 3 0 5 7 0 121 0 6 283 0 1 204 4 6 9 1 0 457 0 1 365 5 6 73 chain 22141 chrX 155270560 + 83183762 83184043 L1PA8 5853 + 3152 3431 117109 69 3 1 209 chain 53808 chrX 155270560 + 83209809 83210516 L1P3 4156 - 276 990 56472 296 2 0 17 2 1 212 0 1 76 3 11 62 0 1 37 chain 135987 chrX 155270560 + 83210684 83212482 L1P3 4156 + 2326 4139 26839 301 5 7 436 1 0 27 0 4 102 0 1 63 27 35 49 0 1 84 0 4 126 2 1 17 2 0 398 0 1 18 5 6 100 2 0 7 2 1 24 chain 44333 chrX 155270560 + 83233648 83234441 L1PB2 3958 + 3061 3838 63783 17 10 12 41 2 1 161 16 14 56 1 0 4 0 4 6 47 44 18 4 1 4 0 1 7 5 0 92 2 1 46 2 0 15 12 11 64 2 1 71 2 0 20 14 13 52 chain 31623 chrX 155270560 + 83256395 83256892 PRIMA4_LTR 623 + 0 611 81444 175 18 41 30 16 24 98 0 1 5 17 97 75 7 9 56 chain 391230 chrX 155270560 + 83263837 83268666 L1PA6 6164 + 0 6159 10420 204 0 1 45 0 1 316 1 0 671 1 0 150 1 2 56 2 0 19 1 2 858 14 0 197 6 1 13 0 1 265 0 2 38 5 0 6 15 19 315 10 12 112 1 0 823 0 2 48 0 2 93 1 1360 199 0 1 217 40 22 86 chain 179384 chrX 155270560 + 83270832 83273357 MER4-int 2692 - 115 2691 21043 24 0 1 43 0 4 46 0 4 149 26 24 12 2 0 7 1 2 28 16 16 87 0 2 111 13 12 59 0 1 79 0 1 280 1 3 38 0 4 32 6 1 19 6 11 206 0 1 260 10 9 5 0 2 74 0 1 15 0 27 17 1 2 126 11 10 24 15 16 367 1 9 133 0 1 73 1 0 57 8 6 25 1 0 10 chain 104162 chrX 155270560 + 83303260 83304770 L1PA5 6144 - 5 1480 35702 146 5 0 6 1 6 351 309 274 692 chain 26899 chrX 155270560 + 83303769 83304078 L1PA5 6144 + 5735 6044 95438 309 chain 20016 chrX 155270560 + 83307681 83307924 THE1B-int 1605 + 1362 1605 127097 243 chain 17592 chrX 155270560 + 83312265 83312504 AluY 311 + 81 311 134019 33 5 4 15 14 7 157 1 0 14 chain 24320 chrX 155270560 + 83314125 83314436 AluSp 311 - 0 311 108546 28 1 0 38 11 10 127 0 1 50 1 2 55 chain 309120 chrX 155270560 + 83321452 83325567 L1PA8 5853 + 50 5853 13041 22 2 0 10 1 0 12 50 14 45 6 10 39 0 1 101 9 0 715 0 2 84 19 24 45 2 1 19 20 24 235 1 0 189 6 5 21 0 1 68 1 3 132 4 1695 28 0 2 63 4 5 34 0 4 167 0 1 241 0 7 14 1 0 55 0 2 819 0 2 66 0 1 50 2 1 4 0 1 222 1 2 156 0 15 33 1 0 50 2 0 59 10 9 60 2 1 19 1 0 93 chain 206628 chrX 155270560 + 83334029 83336788 L1P3 4156 + 6 4137 18744 93 6 4 142 20 19 57 1 0 45 7 5 25 0 3 5 11 0 416 0 1 212 47 0 278 9 1407 168 7 11 555 0 5 26 0 1 62 0 4 261 0 1 133 0 1 28 27 47 36 0 1 49 11 8 22 chain 9101 chrX 155270560 + 83388082 83388211 MER85 139 + 0 139 165065 76 13 23 40 chain 29708 chrX 155270560 + 83418365 83418675 AluYb8 318 + 0 310 85800 310 chain 39974 chrX 155270560 + 83426685 83427318 L1PA8 5853 - 0 567 69355 91 4 3 16 1 0 35 16 14 10 7 6 70 2 0 46 6 5 41 0 1 105 59 0 124 chain 38528 chrX 155270560 + 83445736 83446375 THE1C-int 1605 + 1 624 71400 94 0 57 12 3 0 79 0 4 44 0 1 30 1 0 88 120 46 168 chain 130175 chrX 155270560 + 83467605 83469128 L1PA6 6164 - 2 1527 28054 100 0 3 1016 1 0 406 chain 4279 chrX 155270560 + 83471882 83471933 L1MDb 1215 - 354 405 203480 51 chain 3188 chrX 155270560 + 83480802 83480838 MADE1 96 + 60 96 221152 36 chain 5083 chrX 155270560 + 83485010 83485067 L1PA6 6164 + 5951 6008 194250 57 chain 12141 chrX 155270560 + 83485067 83485219 L1PA6 6164 + 6009 6162 151645 143 0 1 9 chain 3926 chrX 155270560 + 83493105 83493148 L1PB2 3958 + 3795 3838 208471 43 chain 9601 chrX 155270560 + 83501588 83501707 L1MA2 4263 - 688 807 162591 119 chain 50079 chrX 155270560 + 83502669 83503377 MER4E1 777 - 1 777 58960 94 0 6 49 5 6 70 18 13 45 1 83 77 11 1 315 7 1 16 chain 5202 chrX 155270560 + 83516107 83516170 MIR 256 + 165 228 193003 63 chain 55000 chrX 155270560 + 83517045 83517702 L1PA6 6164 - 8 666 55704 129 6 0 15 1 8 506 chain 433957 chrX 155270560 + 83517819 83523026 L1P2 5180 - 2 5178 9214 4 1 0 38 1 0 47 1 0 731 10 14 83 0 1 353 0 6 17 0 1 754 2 1 734 0 1 66 18 0 1534 18 0 6 1 0 272 1 0 7 1 0 261 2 1 96 1 0 79 0 1 68 chain 116653 chrX 155270560 + 83527842 83531810 L1PB1 5432 + 2924 5422 32244 4 0 1 77 0 5 116 0 1 28 7 8 151 1 2 57 0 1 83 0 1 51 2162 710 225 1 2 110 1 2 58 1 3 6 13 0 73 0 1 403 9 6 5 1 0 20 1 0 12 1 0 10 18 12 52 2 1 15 1 0 39 75 71 24 1 0 22 1 0 10 5 4 16 chain 18251 chrX 155270560 + 83528670 83528929 L1PB 1623 - 152 407 132200 17 2 1 7 1 0 139 14 12 79 chain 28498 chrX 155270560 + 83536299 83536688 L1PREC2 3366 - 966 1359 91190 30 0 2 60 15 18 101 1 0 182 chain 29498 chrX 155270560 + 83610535 83610871 L1PA5 6144 + 5802 6138 86643 336 chain 182381 chrX 155270560 + 83620810 83623007 L1PA7 6471 + 4277 6459 20750 210 1 2 340 0 1 379 23 7 404 2 1 81 2 1 592 6 5 20 0 2 137 chain 227348 chrX 155270560 + 83628383 83630912 L1PA3long 6157 + 3610 6157 17465 214 0 1 969 0 16 947 0 1 399 chain 29410 chrX 155270560 + 83640210 83640520 AluYa5 310 - 0 310 87016 310 chain 303075 chrX 155270560 + 83653143 83657217 L1PA8 5853 + 1750 5853 13276 70 0 1 197 0 2 104 1 4 8 2 3 140 0 3 625 0 1 25 1 5 49 1 0 141 0 1 92 1 0 157 15 17 315 1 0 50 0 6 120 0 4 182 6 7 255 0 1 626 1 0 7 3 0 35 9 6 73 0 2 70 23 24 326 0 1 13 0 11 35 1 0 6 8 9 28 3 1 70 2 1 11 1 0 50 2 1 19 1 0 93 chain 81428 chrX 155270560 + 83663995 83664890 L1PA4 6152 + 5255 6151 43000 753 0 1 142 chain 46515 chrX 155270560 + 83690247 83690763 L1PA2 6032 - 680 1196 61586 516 chain 59605 chrX 155270560 + 83690763 83691413 L1PA2 6032 + 5346 6032 53048 616 0 36 34 chain 3567 chrX 155270560 + 83696134 83696245 MER44A 345 - 198 345 214183 28 9 19 18 38 64 18 chain 22642 chrX 155270560 + 83704844 83705115 L1PA4 6152 + 5870 6143 117363 112 1 2 19 1 2 138 chain 8722 chrX 155270560 + 83714028 83714136 L1MA3 4352 + 874 982 167077 108 chain 142185 chrX 155270560 + 83719146 83720832 L1PA7 6471 + 4773 6464 25786 120 4 3 420 0 1 297 0 3 221 0 1 118 0 1 349 0 7 7 7 0 143 chain 6095 chrX 155270560 + 83745730 83745795 L1PA4 6152 - 6 71 184457 65 chain 77481 chrX 155270560 + 83769694 83770743 MER11C 1089 - 26 1089 44745 143 1 0 54 0 1 120 10 11 35 1 0 4 1 5 112 1 0 11 36 35 146 1 0 65 0 4 62 0 9 246 chain 63905 chrX 155270560 + 83771165 83772280 L1PB1 5432 - 13 1025 51050 15 1 0 13 1 0 17 5 4 24 2 0 14 1 0 5 2 0 19 47 33 39 1 0 15 2 1 53 2 0 8 17 12 13 1 0 6 53 0 11 3 0 14 5 0 57 0 1 46 18 0 193 2 9 122 0 1 46 3 0 45 8 9 127 5 6 34 chain 4450 chrX 155270560 + 83782155 83782205 Ricksha_c 1012 - 870 920 201350 50 chain 41013 chrX 155270560 + 83792739 83793201 L1PA5 6144 + 5678 6144 67882 6 0 4 456 chain 15314 chrX 155270560 + 83799274 83799460 L1PA7 6471 + 6279 6465 140445 186 chain 26633 chrX 155270560 + 83801647 83801939 AluYf4 310 + 8 300 97545 292 chain 13404 chrX 155270560 + 83803040 83803205 L1PA3long 6157 - 0 167 146695 146 5 7 14 chain 63164 chrX 155270560 + 83803212 83803918 L1PA3long 6157 + 5283 5990 51374 130 0 1 576 chain 17987 chrX 155270560 + 83804789 83805027 L1MA1 4479 - 3696 3938 132896 16 2 5 12 0 1 208 chain 535914 chrX 155270560 + 83810556 83816694 L1PA5 6144 + 11 6144 3455 113 14 0 2340 0 1 752 0 1 466 0 1 265 0 2 327 0 2 376 6 7 1146 0 1 333 chain 515647 chrX 155270560 + 83826190 83832693 L1PA7 6471 + 0 6459 5602 92 5 6 99 0 1 5 1 0 33 1 0 158 11 12 114 4 3 378 5 8 66 0 1 585 4 0 198 1 0 145 1 0 733 1 0 4 29 6 313 26 5 554 5 4 754 0 2 212 2 0 54 8 5 695 0 11 46 0 1 318 1 0 103 1 2 31 11 2 250 0 2 127 0 1 163 22 23 134 chain 157959 chrX 155270560 + 83847150 83849649 L1PA10 4194 + 175 2602 23599 11 5 3 10 3 0 8 2 0 9 22 16 9 1 0 9 1 0 18 8 6 12 1 0 4 59 33 12 2 0 18 1 0 10 1 0 7 1 0 13 7 5 6 4 0 4 1 0 5 1 0 79 3 2 274 22 27 111 20 20 229 31 0 195 1 0 282 22 26 350 3 4 176 15 18 23 0 7 55 18 22 199 2 1 39 7 5 8 8 0 10 7 12 25 chain 3699 chrX 155270560 + 83854943 83854984 L1PA7 6471 + 5580 5621 211944 41 chain 72062 chrX 155270560 + 83854985 83855831 L1PA7 6471 + 5621 6464 47453 616 1 0 83 0 1 138 3 0 5 chain 180524 chrX 155270560 + 83859301 83861301 L1PA3long 6157 - 0 1999 20940 66 2 0 62 1 2 1869 chain 3106 chrX 155270560 + 83873830 83873865 MER5A 189 + 35 70 222813 35 chain 21302 chrX 155270560 + 83874571 83874807 L1PA4 6152 + 5910 6146 122852 236 chain 49011 chrX 155270560 + 83923686 83924220 L1PA3long 6157 - 4 538 59740 534 chain 156028 chrX 155270560 + 83946667 83948521 L1PA6 6164 - 2 1851 23856 6 4 0 27 9 10 1127 1 0 343 1 0 336 chain 2784 chrX 155270560 + 83949303 83949337 L1MA8 2339 + 2299 2333 228938 34 chain 24420 chrX 155270560 + 83952740 83953195 HERVL-int 5654 - 5305 5654 107968 185 128 13 44 1 0 5 0 1 5 8 17 79 chain 4277 chrX 155270560 + 83952936 83952988 HERVL-int 5654 + 111 163 203514 52 chain 57744 chrX 155270560 + 83954293 83955365 L1PA8 5853 - 0 771 54109 93 2 1 18 2 1 39 3 4 9 2 1 8 2 1 70 2 0 44 1 0 39 310 0 4 0 1 402 0 14 22 chain 253462 chrX 155270560 + 83955367 83958234 L1PA4 6152 + 3291 6146 16058 1338 1 0 656 12 0 137 0 2 186 1 0 536 chain 40786 chrX 155270560 + 83985745 83986292 MER41A 554 - 0 554 68194 76 4 9 28 0 1 18 10 14 39 4 0 354 0 1 14 chain 27923 chrX 155270560 + 83993507 83993957 LTR21A 479 + 0 479 93270 22 2 0 34 4 1 7 1 0 11 0 3 97 1 0 82 0 3 44 24 51 39 0 4 27 7 9 15 9 6 24 chain 6683 chrX 155270560 + 83996391 83996955 HERVFH21-int 991 + 490 856 179814 42 9 7 13 397 224 13 21 3 17 6 2 8 1 0 37 chain 20376 chrX 155270560 + 83999674 83999977 LTR21A 479 + 0 308 125973 22 2 0 34 20 19 11 0 1 145 7 11 13 0 3 49 chain 10134 chrX 155270560 + 84003916 84004047 L1P3 4156 - 4024 4156 159926 44 2 3 85 chain 27635 chrX 155270560 + 84016863 84017186 LTR17 781 + 0 324 94249 165 0 1 158 chain 14669 chrX 155270560 + 84028707 84028868 L1HS 6032 - 0 162 142362 98 0 1 63 chain 34899 chrX 155270560 + 84033472 84033873 L1PA5 6144 - 0 400 76342 21 2 1 378 chain 21904 chrX 155270560 + 84058998 84059236 L1PA3long 6157 - 0 238 120604 238 chain 79656 chrX 155270560 + 84061804 84062830 L1PA8A 6298 + 5268 6291 43752 221 2 1 78 6 5 576 0 1 17 7 5 119 chain 288217 chrX 155270560 + 84064059 84067549 L1PA7 6471 - 2 3510 14150 10 3 1 23 4 13 793 0 2 524 0 1 27 3 0 55 0 1 64 0 1 703 0 1 673 5 8 194 5 6 269 0 4 135 chain 225202 chrX 155270560 + 84071823 84074306 L1PA3long 6157 + 3673 6157 17580 2329 1 0 11 0 2 142 chain 44347 chrX 155270560 + 84075560 84076113 MER41A 554 - 0 554 63763 419 0 1 134 chain 32845 chrX 155270560 + 84091035 84091480 MLT2A1 477 + 0 477 79467 168 5 2 9 0 1 24 0 1 58 1 0 120 23 57 37 chain 32920 chrX 155270560 + 84098704 84099076 L1PA6 6164 + 5790 6162 79337 372 chain 62913 chrX 155270560 + 84103232 84104216 L1PA14 3548 + 2387 3413 51484 64 4 5 81 1 0 43 6 5 104 1 0 78 1 70 101 3 1 8 0 1 5 2 0 26 1 0 22 2 0 4 2 0 105 20 16 5 2 0 6 1 0 84 2 1 109 25 20 28 4 2 12 1 0 5 1 0 15 chain 77546 chrX 155270560 + 84105874 84106882 MER11A 1151 + 0 1151 44716 55 0 99 140 0 2 92 0 1 23 0 1 260 10 14 132 6 40 58 0 1 41 8 10 116 1 0 66 chain 124978 chrX 155270560 + 84110627 84112173 LTR12C 1709 - 0 1709 29400 481 0 4 106 12 9 272 1 0 15 0 119 98 0 1 134 3 0 81 8 51 36 1 3 5 1 0 24 0 1 34 4 5 230 chain 25752 chrX 155270560 + 84118313 84118678 MER4E 760 - 7 357 101076 219 13 1 4 1 0 85 7 6 28 1 0 7 chain 38387 chrX 155270560 + 84124011 84124475 L1PA5 6144 + 4722 5187 71589 173 1 2 78 1 2 139 1 0 71 chain 40654 chrX 155270560 + 84124475 84124947 L1PA5 6144 + 5671 6144 68365 330 0 1 142 chain 24643 chrX 155270560 + 84125192 84125468 L1PA5 6144 + 4872 5148 106765 276 chain 19002 chrX 155270560 + 84125468 84125697 L1PA5 6144 + 5764 5988 130101 218 5 0 6 chain 10880 chrX 155270560 + 84125709 84125836 L1PA5 6144 + 6005 6132 156662 127 chain 64245 chrX 155270560 + 84134829 84135838 L1PA14 3548 - 135 1182 50899 15 1 0 5 1 0 15 4 2 25 13 9 10 1 0 36 3 0 74 2 1 84 18 15 12 4 0 105 2 0 4 2 0 20 3 0 5 5 7 16 2 0 10 6 5 105 0 69 75 1 0 104 6 5 44 1 0 170 chain 54635 chrX 155270560 + 84138618 84139396 THE1-int 844 + 1 772 55946 18 1 0 22 2 1 13 1 0 51 1 0 20 1 0 124 0 1 438 31 52 6 24 0 25 chain 43044 chrX 155270560 + 84150553 84151100 LTR25 836 - 292 836 65363 91 15 9 409 0 3 32 chain 100830 chrX 155270560 + 84153945 84155203 L1PA8A 6298 - 8 1289 36551 114 2 1 321 7 31 341 2 0 159 0 1 246 1 2 65 chain 187566 chrX 155270560 + 84156172 84158302 L1PA5 6144 - 9 2144 20286 322 0 1 1179 0 1 184 0 3 445 chain 7743 chrX 155270560 + 84175433 84175650 THE1C 375 - 39 261 172643 20 3 6 16 7 9 35 68 67 50 5 6 13 chain 58816 chrX 155270560 + 84193758 84194533 MER4E1 777 - 6 777 53512 88 4 0 56 8 7 69 1 9 197 1 2 318 8 0 25 chain 22517 chrX 155270560 + 84196528 84196814 AluSq10 312 + 19 304 117958 156 9 8 121 chain 39412 chrX 155270560 + 84199689 84200148 LTR2 463 + 0 463 70140 129 0 3 132 0 1 198 chain 422889 chrX 155270560 + 84201971 84207028 Harlequin-int 5206 + 144 5206 9460 162 2 5 45 4 9 117 1 0 165 0 1 4 1 0 30 1 0 47 1 2 115 0 1 19 1 0 67 1 0 4 0 1 211 2 6 244 0 1 152 4 0 392 2 0 500 0 2 545 0 1 957 0 2 173 11 4 101 1 0 304 7 0 7 4 11 246 1 0 269 1 4 136 chain 1151 chrX 155270560 + 84207028 84207113 LTR2 463 + 0 85 75305 85 chain 189765 chrX 155270560 + 84207122 84209233 L1PA4 6152 + 4007 6124 20075 1376 0 1 616 1 6 118 chain 5062 chrX 155270560 + 84209289 84209663 LTR2 463 + 85 463 75305 44 0 3 136 0 1 194 chain 58413 chrX 155270560 + 84212673 84213792 MER4E1 777 - 8 777 53737 21 0 1 196 1 9 16 1 7 202 3 19 202 371 0 75 10 0 21 chain 48431 chrX 155270560 + 84214190 84214807 LTR10C 591 + 0 591 60159 198 4 2 316 25 1 74 chain 4172 chrX 155270560 + 84214930 84214987 L1PREC2 3366 + 2990 3046 204956 22 1 0 34 chain 477132 chrX 155270560 + 84220419 84227015 L1PA8A 6298 - 7 6264 7828 104 1 2 220 0 2 224 0 1 248 2 1 121 23 6 26 2 1 67 0 1 58 0 1 389 1 0 124 1 0 291 0 1 12 7 9 508 1 2 157 0 1 15 0 1 63 0 3 240 3 1 341 8 9 72 0 4 4 0 1 111 300 0 25 0 1 53 3 4 200 0 9 54 2 3 365 2 1 581 19 30 387 2 1 9 10 7 13 7 11 310 14 7 8 0 1 331 1 0 6 2 1 9 1 0 15 2 0 73 6 0 23 5 4 42 13 8 13 2 1 8 1 0 4 12 10 13 1 0 4 2 0 17 2 0 10 1 0 6 2 1 10 4 3 9 2 1 15 22 13 19 3 1 20 6 1 6 2 0 8 3 0 5 2 1 18 1 0 6 chain 22482 chrX 155270560 + 84234165 84234448 AluSp 311 + 28 310 118096 102 2 0 97 0 1 82 chain 59682 chrX 155270560 + 84240789 84241553 L1PA8 5853 - 1 764 53001 91 2 1 19 2 1 46 3 1 14 1 0 71 2 0 44 1 0 283 0 7 185 chain 25454 chrX 155270560 + 84246899 84247220 L1PA5 6144 + 5784 6114 102438 206 1 8 88 1 3 25 chain 84102 chrX 155270560 + 84248503 84249466 L1P1 4361 + 3382 4341 41852 4 1 0 764 1 0 155 1 0 23 2 1 12 chain 77657 chrX 155270560 + 84251687 84252617 L1PA7 6471 + 5538 6470 44672 84 0 2 846 chain 32091 chrX 155270560 + 84284650 84285148 L1PB2 3958 + 3338 3838 80711 20 0 3 13 3 0 54 11 16 8 4 0 61 0 1 31 24 23 37 0 4 8 1 0 62 1 0 66 0 2 6 2 0 22 1 0 63 chain 18660 chrX 155270560 + 84292224 84292572 THE1B 368 + 0 368 131049 76 26 41 57 64 69 125 chain 294153 chrX 155270560 + 84313885 84317167 L1PA4 6152 - 1 3284 13757 923 0 1 598 1 0 328 2 1 1137 1 3 292 chain 202606 chrX 155270560 + 84317813 84320593 L1PA10 4194 - 44 2826 19017 7 1 0 26 3 0 239 0 2 29 0 1 98 1 0 79 1 0 64 6 5 314 1 0 145 10 0 304 1 4 51 0 1 4 1 0 19 13 13 70 0 4 6 15 2 27 0 6 7 50 47 316 0 1 30 1 5 105 0 2 5 7 0 60 0 1 108 5 6 284 0 2 5 3 1 21 0 1 192 5 22 41 chain 7610 chrX 155270560 + 84330900 84331254 MLT1A 405 - 28 405 173471 25 2 0 29 215 242 28 10 8 45 chain 467295 chrX 155270560 + 84332118 84337526 L1PA6 6164 - 3 5436 8140 76 1 0 653 0 15 95 0 4 675 1 0 174 1 2 535 1 2 740 0 1 663 1 0 200 0 1 295 0 4 616 8 4 24 0 1 99 0 4 550 chain 2878 chrX 155270560 + 84365976 84366013 MIR 256 - 148 185 227397 37 chain 10217 chrX 155270560 + 84366950 84367074 MER50 708 - 22 146 159528 124 chain 37390 chrX 155270560 + 84378032 84378667 L1PA15 4387 - 87 700 72970 8 0 2 20 6 3 49 2 1 12 8 4 16 2 1 9 7 2 32 11 10 29 1 0 44 23 27 99 1 0 40 3 1 68 8 1 9 2 0 126 chain 519554 chrX 155270560 + 84382659 84388790 L1PA6 6164 - 5 6163 5207 327 1 0 750 0 1 612 0 1 628 5 6 643 0 1 1693 0 1 50 2 1 621 0 17 218 0 1 78 11 10 97 25 32 370 chain 550955 chrX 155270560 + 84401843 84407978 L1PA3long 6157 + 6 6152 1321 1016 1 0 427 0 9 867 6 7 364 6 7 2299 0 1 1149 chain 49546 chrX 155270560 + 84417488 84418180 L1PBa 3878 - 136 820 59360 5 2 0 16 1 0 60 1 0 173 22 20 4 0 1 235 6 0 120 5 8 42 chain 41897 chrX 155270560 + 84428776 84429266 L1PA5 6144 - 1 485 66758 8 5 0 249 1 0 227 chain 28699 chrX 155270560 + 84445794 84446129 L1PA5 6144 + 5805 6138 90330 167 2 0 166 chain 36559 chrX 155270560 + 84449594 84450026 L1PA7 6471 + 6025 6457 74159 432 chain 37262 chrX 155270560 + 84452506 84452912 L1PA3long 6157 - 1 407 73154 406 chain 174733 chrX 155270560 + 84462913 84465002 L1PA6 6164 - 4 3164 21505 6 2 0 139 13 13 307 9 11 362 0 4 298 0 8 177 0 14 464 0 1043 123 0 1 38 0 1 151 chain 3693 chrX 155270560 + 84469017 84469101 MLT1E1A 663 - 0 86 212044 33 22 26 6 2 0 21 chain 7173 chrX 155270560 + 84509245 84509325 AluY 311 + 52 132 176252 80 chain 30108 chrX 155270560 + 84509328 84509649 AluYb8 318 + 0 318 84460 123 3 0 195 chain 37695 chrX 155270560 + 84512869 84513519 L1PB1 5432 + 4787 5422 72559 18 0 8 238 2 0 52 6 10 25 1 0 6 1 0 12 17 12 49 0 2 8 12 11 27 0 1 16 2 1 18 65 49 20 1 0 22 1 0 12 1 0 18 chain 4195 chrX 155270560 + 84516307 84516366 L1MB7 1623 - 194 253 204615 6 1 0 27 0 1 25 chain 164534 chrX 155270560 + 84538929 84540812 L1PA5 6144 + 4247 6139 22741 200 0 3 933 1 0 45 15 22 689 chain 4447 chrX 155270560 + 84565079 84565132 5S 121 - 29 82 201371 53 chain 238996 chrX 155270560 + 84566209 84569119 L1PA7 6471 - 1 2919 16832 4 1 0 106 4 0 76 0 12 178 0 6 25 1 0 90 0 1 77 0 12 181 0 2 79 6 5 214 1 2 421 1 0 23 0 1 886 1 2 236 20 0 279 chain 36201 chrX 155270560 + 84575264 84575661 L1PA3long 6157 + 2810 3208 74625 378 0 1 19 chain 267349 chrX 155270560 + 84575663 84578611 L1PA3long 6157 + 3209 6157 15323 2948 chain 13655 chrX 155270560 + 84585678 84585834 L1PA5 6144 + 5988 6144 145757 156 chain 13011 chrX 155270560 + 84598045 84598202 L1PA7 6471 + 6309 6466 148200 14 0 1 89 1 0 53 chain 59208 chrX 155270560 + 84605041 84605688 L1PA3long 6157 - 0 648 53279 338 0 1 309 chain 14869 chrX 155270560 + 84605688 84605855 L1PA3long 6157 + 5341 5509 141723 42 0 1 125 chain 171562 chrX 155270560 + 84609522 84611472 L1PA5 6144 + 4192 6144 21875 1789 19 22 29 1 0 112 chain 33037 chrX 155270560 + 84616371 84616959 L1PREC2 3366 - 330 878 79161 26 6 4 35 22 8 11 4 1 28 2 0 9 60 47 13 3 0 4 1 0 32 0 2 9 9 8 47 2 0 10 1 0 29 2 0 129 0 2 94 chain 8694 chrX 155270560 + 84644521 84644634 MER85 139 + 15 139 167224 55 0 1 17 1 11 40 chain 51852 chrX 155270560 + 84652334 84653357 L1MA1 4479 - 297 1253 57718 10 7 0 9 3 1 11 1 0 9 1 0 14 0 3 5 3 0 13 2 0 29 1 0 126 3 0 5 1 0 14 2 0 6 1 3 33 6 7 24 2 1 13 2 0 23 9 10 58 1 0 16 8 6 19 1 0 200 1 0 104 143 106 41 5 0 12 6 5 20 chain 262717 chrX 155270560 + 84657032 84660558 L1PA7 6471 - 13 3208 15551 837 1 0 323 0 1 182 1 2 164 5 4 273 0 4 147 1 3 25 337 0 512 1 0 436 1 0 4 10 12 266 chain 129818 chrX 155270560 + 84660558 84662107 L1PA7 6471 + 1716 3264 28105 379 4 0 67 1 6 463 1 2 60 5 2 569 chain 96605 chrX 155270560 + 84669627 84670805 L1PA6 6164 - 9 1189 37666 97 0 3 51 3 4 168 2 3 520 0 1 17 5 1 315 chain 537977 chrX 155270560 + 84676843 84682866 L1PA3long 6157 - 1 6157 3152 2468 0 1 208 6 5 207 1 0 4 1 2 2096 5 8 253 4 132 455 0 1 160 4 5 151 chain 119206 chrX 155270560 + 84697567 84699112 THE1A-int 1579 - 11 1579 31333 193 0 1 253 0 4 128 29 40 618 2 3 4 1 0 87 0 7 230 chain 24885 chrX 155270560 + 84725009 84725366 THE1B 368 + 0 368 105438 44 0 15 113 2 1 27 13 9 18 8 9 132 chain 21429 chrX 155270560 + 84737383 84737646 L1PA4 6152 - 0 268 122410 6 0 5 257 chain 21188 chrX 155270560 + 84776831 84777210 THE1D 372 + 2 372 123251 54 26 17 165 5 11 14 5 1 38 42 40 30 chain 537279 chrX 155270560 + 84784218 84790233 L1PA3long 6157 + 4 6157 3280 59 7 8 81 0 1 615 5 136 253 5 8 2529 0 3 2127 1 0 333 chain 476600 chrX 155270560 + 84810467 84816726 L1PA8A 6298 - 10 6221 7844 416 2 3 365 2 1 10 1 4 277 2 1 392 1 0 94 18 6 140 0 1 443 0 1 262 0 1 162 4 5 245 0 4 34 1 6 49 1 0 210 0 2 296 0 1 280 0 1 69 12 0 80 0 1 208 0 1 81 1 2 143 0 1 86 0 1 69 0 1 10 0 1 144 1 0 384 1 2 68 1 0 24 0 2 61 1 0 603 0 1 20 1 0 5 0 1 70 8 6 9 1 0 14 2 0 80 39 27 35 2 0 8 16 11 4 1 0 5 1 0 9 11 9 12 1 0 4 2 0 15 2 0 12 1 0 7 4 3 9 2 1 9 2 1 11 14 8 5 2 0 4 1 0 18 4 1 23 chain 340509 chrX 155270560 + 84818713 84823172 L1PA6 6164 - 8 4530 11886 94 3 0 5 0 3 96 3 0 76 13 64 304 7 10 129 0 1 51 0 8 7 0 1 10 13 17 124 1 2 194 0 1 4 1 0 241 21 1 53 6 9 698 16 17 36 0 1 106 1 2 96 0 1 393 0 1 120 2 3 241 0 4 8 10 6 584 0 2 15 1 0 34 8 10 202 3 6 379 0 2 50 chain 6201 chrX 155270560 + 84832907 84832978 MER21A 919 + 503 574 183579 71 chain 520330 chrX 155270560 + 84838173 84844304 L1PA5 6144 + 0 6143 5121 270 1 0 203 14 15 235 3 1 309 0 1 1014 3 6 256 7 0 847 0 12 150 0 4 177 0 1 369 0 1 1038 1 0 1068 20 20 146 chain 38226 chrX 155270560 + 84878617 84879079 LTR2 463 + 0 463 71808 362 12 13 88 chain 12651 chrX 155270560 + 84886650 84886803 L1PB 1623 - 319 472 149637 153 chain 10231 chrX 155270560 + 84886806 84886936 L1PB 1623 + 474 603 159464 10 1 0 119 chain 128192 chrX 155270560 + 84891568 84893314 L1PB1 5432 - 334 2084 28525 288 6 13 33 16 15 27 0 1 91 5 0 281 5 6 222 8 9 126 1 0 225 10 10 146 7 8 249 chain 22801 chrX 155270560 + 84905831 84906082 L1PA4 6152 + 5899 6151 116572 139 0 1 112 chain 49436 chrX 155270560 + 84917739 84918352 L1PA7 6471 + 5852 6457 59430 117 10 9 78 0 1 264 19 11 125 chain 75248 chrX 155270560 + 84919146 84919968 L1PA4 6152 - 254 1076 45898 822 chain 19133 chrX 155270560 + 84919969 84920216 L1PA4 6152 + 5897 6152 129728 82 19 27 146 chain 25221 chrX 155270560 + 84925425 84925698 L1PA3long 6157 - 551 826 103637 259 0 2 14 chain 45897 chrX 155270560 + 84925698 84926217 L1PA3long 6157 + 5635 6154 62134 519 chain 82297 chrX 155270560 + 84927111 84928308 L1MA2 4263 - 223 1415 42625 74 1 0 9 2 1 36 0 1 7 1 0 51 1 0 55 12 9 75 19 20 40 2 1 76 8 5 6 0 1 413 14 15 164 1 0 4 1 2 65 3 5 57 chain 27287 chrX 155270560 + 84934352 84934657 L1PA4 6152 - 9 314 95318 305 chain 32844 chrX 155270560 + 84940147 84940567 L1PB1 5432 + 4049 4461 79469 190 8 0 222 chain 466038 chrX 155270560 + 84948235 84954548 L1PA8A 6298 - 7 6268 8184 100 8 0 7 0 7 451 13 14 142 0 2 78 2 1 145 7 2 278 9 0 7 7 16 673 0 1 4 2 1 4 0 1 485 3 5 169 11 2 83 18 17 224 1 0 26 14 17 692 3 0 65 0 1 64 5 6 72 0 1 404 12 15 508 0 2 91 0 1 183 6 2 19 0 2 65 0 1 9 26 27 146 1 4 45 15 24 198 1 0 4 0 1 242 4 2 11 4 3 11 2 0 77 6 0 12 7 6 47 2 0 8 20 15 5 1 0 9 30 25 15 2 0 8 14 12 10 1 0 11 2 1 18 27 11 20 3 0 19 32 21 28 chain 133602 chrX 155270560 + 84957058 84958717 L1PA6 6164 + 3720 6156 27298 204 0 745 4 0 1 680 0 11 482 0 1 95 5 9 46 4 19 139 chain 16546 chrX 155270560 + 84961649 84961877 L1MA1 4479 + 1814 2041 136807 137 19 18 72 chain 91605 chrX 155270560 + 84966940 84968013 L1PA5 6144 - 16 1090 39093 131 0 1 118 1 0 51 0 1 13 0 1 518 1 0 240 chain 69972 chrX 155270560 + 84968013 84968808 L1PA5 6144 + 3972 4768 48403 71 0 1 128 0 1 485 1 0 110 chain 22770 chrX 155270560 + 84968814 84969085 L1PA5 6144 + 4777 5062 116725 227 5 19 39 chain 184115 chrX 155270560 + 84970747 84973072 L1P2 5180 - 1103 3442 20579 271 0 1 223 0 1 317 0 5 469 5 9 108 1 2 348 1 2 309 0 1 273 chain 165162 chrX 155270560 + 84973076 84975152 L1PA7 6471 + 4394 6465 22635 238 0 2 321 1 0 227 0 1 208 1 10 218 3 0 5 22 11 68 1 0 256 3 1 176 0 1 22 0 2 298 2 0 6 chain 67908 chrX 155270560 + 84978264 84979023 SVA_D 2077 - 21 831 49282 607 3 5 38 0 49 111 chain 457262 chrX 155270560 + 84983534 84988691 L1PA3long 6157 - 5 5167 8503 152 6 0 1815 0 1 1006 0 1 1339 0 1 260 0 6 328 0 1 150 0 1 101 chain 68770 chrX 155270560 + 84988691 84989504 L1HS 6032 + 78 894 48873 173 6 5 324 0 4 310 chain 141256 chrX 155270560 + 84995899 84997856 L1P2 5180 + 2016 3952 25945 311 26 0 5 1 2 51 7 1 33 0 1 323 8 7 36 0 4 136 0 3 303 12 16 202 55 54 448 chain 119684 chrX 155270560 + 85002198 85003668 L1PA8A 6298 - 10 1489 31150 405 5 7 303 0 2 78 1 4 6 0 1 592 0 1 80 chain 28106 chrX 155270560 + 85003717 85005174 L1PB1 5432 - 19 1694 18339 9 1 0 8 2 5 20 66 69 7 1 0 15 1 0 43 1 0 16 2 1 52 2 0 5 11 7 9 1 0 9 1 0 24 3 0 6 21 26 239 38 27 7 0 12 20 8 7 82 0 2 48 4 29 115 9 10 36 0 2 68 0 1 268 8 200 171 chain 542222 chrX 155270560 + 85006727 85012871 L1PA3long 6157 - 0 6157 2467 849 1 2 1115 0 1 228 0 2 1705 1 2 37 4 7 282 0 5 1922 chain 34800 chrX 155270560 + 85012920 85014724 L1PB1 5432 - 2974 4771 18339 481 3 6 561 20 1 63 1 3 212 0 1 105 1 2 167 0 5 190 chain 528823 chrX 155270560 + 85021908 85028039 L1PA4 6152 - 11 6152 4321 1786 0 4 701 5 6 650 0 1 111 0 2 379 0 1 298 0 2 264 1 0 1936 chain 34621 chrX 155270560 + 85029295 85029782 MER9a3 513 - 0 513 76725 75 3 4 17 0 1 79 0 21 58 1 0 80 6 8 5 1 0 34 1 2 114 0 2 13 chain 11405 chrX 155270560 + 85036055 85036226 L1PA11 4918 + 4301 4471 154676 30 2 1 61 2 1 12 4 5 60 chain 294452 chrX 155270560 + 85043753 85047015 L1PA3long 6157 - 0 3261 13738 253 1 0 3008 chain 3929 chrX 155270560 + 85052713 85052768 L1PA17 2846 - 2771 2824 208438 40 1 0 8 1 0 5 chain 115490 chrX 155270560 + 85072097 85073953 HUERS-P3b-int 2065 + 13 1764 32610 81 4 0 59 23 26 90 9 8 18 4 0 11 76 8 92 4 5 29 0 4 118 2 3 13 3 0 118 0 1 63 0 2 12 1 0 54 1 0 20 3 1 205 0 1 22 4 3 10 0 1 19 4 0 109 1 2 211 116 91 78 2 0 13 1 0 82 1 0 32 3 1 35 chain 415885 chrX 155270560 + 85077095 85082571 L1PB1 5432 + 20 5420 9643 530 1 0 52 2 0 473 0 1 91 0 2 226 1 0 8 10 0 307 2 1 99 1 0 443 1 0 124 5 9 119 8 0 56 3 0 176 2 0 105 2 0 49 0 1 434 1 2 49 0 1 344 35 17 509 2 1 139 0 1 187 3 2 48 4 0 172 1 0 216 7 9 80 0 3 8 1 0 24 1 0 8 1 0 12 5 1 8 2 0 53 18 16 45 1 0 15 3 0 6 50 35 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 41790 chrX 155270560 + 85092834 85093378 MLT2A2 560 - 0 560 66914 8 0 4 23 13 7 10 0 2 16 0 1 78 0 11 71 1 5 324 chain 24942 chrX 155270560 + 85101728 85102071 L1PA7 6471 - 5324 5672 104366 108 18 23 114 4 0 6 4 8 89 chain 102745 chrX 155270560 + 85102071 85103303 L1PA7 6471 + 5248 6468 36065 209 0 1 156 0 3 496 20 0 195 8 12 148 chain 44172 chrX 155270560 + 85109175 85109677 L1PA7 6471 + 5964 6466 63980 502 chain 122867 chrX 155270560 + 85120515 85122087 THE1D-int 1627 + 0 1611 30089 15 0 2 13 0 1 6 1 0 613 0 31 7 0 1 13 12 15 580 0 3 123 0 1 119 2 0 68 chain 24621 chrX 155270560 + 85142158 85142513 THE1B 368 + 0 368 106883 44 6 21 108 1 0 27 2 0 38 9 12 45 2 0 73 chain 56119 chrX 155270560 + 85142513 85143278 THE1B-int 1605 + 0 791 55059 421 9 34 172 11 10 48 17 19 87 chain 25495 chrX 155270560 + 85145389 85145743 THE1A 353 + 0 353 102245 109 2 1 92 7 6 46 15 16 83 chain 122221 chrX 155270560 + 85145757 85147297 THE1A-int 1579 + 14 1574 30303 72 1 0 388 10 16 181 13 19 94 0 1 286 3 0 19 4 11 294 1 0 99 0 5 75 chain 63248 chrX 155270560 + 85170144 85171161 L1PA13 3608 + 2377 3548 51339 70 0 180 202 0 2 102 5 6 29 0 1 16 0 1 118 6 7 21 1 0 28 1 0 85 0 1 13 16 14 62 1 0 12 11 9 30 13 10 47 2 0 5 2 0 20 2 1 13 0 3 12 18 7 14 1 0 4 23 14 12 chain 40358 chrX 155270560 + 85189298 85189810 L1PA5 6144 - 0 520 68792 11 0 16 141 5 7 14 12 1 235 0 1 94 chain 25776 chrX 155270560 + 85197779 85198069 L1PA4 6152 - 13 303 100981 290 chain 15428 chrX 155270560 + 85218006 85218238 L1PA7 6471 - 6 206 140107 6 5 0 105 29 0 40 0 2 47 chain 143219 chrX 155270560 + 85226260 85227925 LTR12C 1709 - 0 1709 25610 426 0 1 54 0 4 106 9 6 235 0 40 400 0 1 296 0 1 139 chain 139752 chrX 155270560 + 85242546 85244596 L1PA14 3548 + 1453 3485 26177 81 0 2 6 0 7 8 9 2 237 0 1 50 1 0 45 0 6 104 8 7 167 0 2 160 0 3 122 6 7 59 6 7 153 1 0 81 1 3 10 2 1 153 2 0 11 6 5 47 2 0 6 3 1 102 13 9 13 2 0 6 1 0 79 6 5 111 1 0 11 5 1 35 4 2 12 1 0 5 1 0 17 2 1 39 6 0 10 1 0 20 chain 506930 chrX 155270560 + 85257438 85263419 L1PA6 6164 + 2 6162 6402 193 0 1 4 1 0 23 0 165 38 0 1 91 0 2 47 1 0 475 6 7 1164 0 2 111 1 0 947 0 2 722 0 1 367 0 4 943 0 4 785 1 0 61 chain 20937 chrX 155270560 + 85264945 85265187 L1PA6 6164 + 5759 6002 124160 72 0 1 170 chain 13343 chrX 155270560 + 85265213 85265365 L1PA6 6164 + 6010 6162 146920 152 chain 22663 chrX 155270560 + 85270112 85270443 THE1A 353 + 0 346 117252 44 6 21 44 23 22 13 0 1 201 chain 117779 chrX 155270560 + 85270450 85272327 THE1A-int 1579 + 0 1570 31863 33 0 1 136 1 0 5 2 3 227 314 0 89 15 20 122 49 52 404 0 1 141 3 0 336 chain 24549 chrX 155270560 + 85272336 85272691 THE1A 353 + 0 353 107261 15 2 0 33 0 1 40 37 36 228 chain 8179 chrX 155270560 + 85274611 85274716 HY3 101 + 0 99 170068 72 6 0 27 chain 3198 chrX 155270560 + 85275728 85275763 Tigger4b 360 + 313 348 220986 35 chain 63076 chrX 155270560 + 85291096 85291850 MER4E 760 - 18 760 51413 207 4 0 7 8 0 382 1 0 128 0 1 17 chain 66737 chrX 155270560 + 85308554 85309305 L1PA5 6144 - 12 764 49760 144 0 1 607 chain 9242 chrX 155270560 + 85318584 85318730 MER50 708 - 0 146 164340 68 27 0 8 0 27 43 chain 97522 chrX 155270560 + 85322367 85324809 L1PA11 4918 + 3135 4629 37414 63 0 1 119 0 2 65 1 2 12 0 1 75 3 0 61 1 0 117 14 7 20 25 23 22 0 1 46 12 10 18 1 0 97 5 6 142 923 15 8 0 1 124 0 6 111 0 4 14 6 0 65 2 1 12 3 1 65 2 0 16 1 0 13 8 4 12 8 3 10 13 9 15 1 0 13 60 44 18 chain 49860 chrX 155270560 + 85323294 85324188 LTR10C 591 + 3 591 59115 45 0 4 44 310 0 495 chain 144724 chrX 155270560 + 85329211 85330801 L1PA3long 6157 - 8 1600 25367 175 0 1 1346 0 1 69 chain 77587 chrX 155270560 + 85330802 85331657 L1PA3long 6157 + 3666 4521 44697 855 chain 24626 chrX 155270560 + 85335933 85336275 THE1A 353 - 13 353 106851 246 17 16 30 0 1 32 2 0 15 chain 115837 chrX 155270560 + 85336275 85337842 THE1A-int 1579 - 0 1579 32520 80 0 5 174 1 2 5 1 0 71 13 0 8 0 13 161 0 1 402 0 1 4 1 0 4 9 12 89 6 8 323 0 1 17 28 29 23 6 5 141 chain 5845 chrX 155270560 + 85339009 85339094 THE1D 372 + 80 166 186731 59 5 6 21 chain 3094 chrX 155270560 + 85344777 85344823 L1PB1 5432 + 5114 5158 223030 23 1 0 7 1 0 14 chain 3782 chrX 155270560 + 85344828 85344889 L1PB1 5432 + 5159 5219 210633 9 3 1 33 0 1 16 chain 4631 chrX 155270560 + 85344890 85344947 L1PB1 5432 + 5219 5275 199288 19 1 0 37 chain 24520 chrX 155270560 + 85356393 85356684 AluY 311 + 19 311 107437 107 0 1 184 chain 39937 chrX 155270560 + 85360712 85361418 L1MA1 4479 + 1392 2999 69412 40 10 14 20 2 0 5 0 2 43 16 5 37 0 3 117 0 1 181 2 911 33 1 0 59 66 65 20 15 14 18 7 5 14 chain 539062 chrX 155270560 + 85368334 85374350 L1PA3long 6157 - 10 6157 2980 2668 0 1 2559 0 1 9 0 128 628 0 1 152 chain 178311 chrX 155270560 + 85374372 85376848 L1PBa 3878 - 1141 3612 21135 23 0 2 7 5 0 241 1 0 6 5 6 789 6 1 6 0 1 4 0 4 25 45 42 96 6 2 128 19 20 204 6 5 39 0 2 96 22 26 167 1 0 7 1 2 264 1 0 256 chain 4746 chrX 155270560 + 85390351 85390410 MER53 195 + 0 59 197956 59 chain 6029 chrX 155270560 + 85416930 85416998 MER41B 635 - 86 154 184989 68 chain 52901 chrX 155270560 + 85419398 85420205 L1PA14 3548 - 98 878 57080 36 2 1 15 1 0 5 1 0 16 4 2 33 5 1 10 1 0 110 1 0 76 10 1 7 0 6 17 4 0 109 2 0 5 2 0 47 2 0 14 3 1 24 3 0 132 1 5 13 2 1 75 1 0 18 chain 9927 chrX 155270560 + 85432037 85432198 L1MA3 4352 - 48 201 160938 16 1 0 5 2 1 22 2 0 21 7 3 85 chain 256487 chrX 155270560 + 85436202 85439215 L1PA7 6471 - 12 3039 15907 614 5 6 218 1 0 542 0 9 159 0 1 71 0 1 212 2 0 196 0 1 130 3 5 796 0 1 46 0 1 18 chain 30981 chrX 155270560 + 85445514 85446352 L1PA15 4387 + 3856 4366 82546 34 2 0 42 1 0 31 0 2 42 315 6 91 1 0 26 1 0 55 1 0 22 4 0 11 1 0 35 20 17 46 2 0 10 10 5 21 0 1 4 1 0 9 chain 230550 chrX 155270560 + 85451746 85455077 L1PA13 3608 + 218 3488 17280 68 7 5 125 1 0 12 1 0 17 2 0 16 6 2 18 1 0 17 12 10 8 2 0 16 1 0 99 3 1 193 8 9 158 4 3 52 3 0 72 9 5 117 0 6 243 1 0 347 12 4 162 17 25 796 0 1 120 1 2 119 3 6 60 1 0 16 34 0 11 6 5 109 2 0 61 1 0 22 1 0 40 9 7 17 2 3 20 32 27 18 chain 28686 chrX 155270560 + 85471233 85471567 L1PA6 6164 - 19 352 90381 185 1 0 148 chain 229590 chrX 155270560 + 85483001 85486200 L1PB1 5432 - 19 3169 17323 9 1 0 13 1 0 21 1 0 24 2 0 14 12 9 23 11 0 19 1 0 43 2 1 16 2 1 53 32 50 12 1 2 134 29 3 333 4 0 244 0 1 8 8 6 533 0 1 118 0 1 285 1 6 12 0 1 308 30 6 87 3 0 5 5 8 265 0 1 152 0 1 7 2 0 82 5 4 9 1 2 134 5 6 77 chain 24537 chrX 155270560 + 85488647 85489002 THE1A 353 - 0 353 107328 228 46 45 32 0 1 34 2 0 13 chain 105068 chrX 155270560 + 85506357 85507876 L1PB1 5432 - 5 1484 35487 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 10 1 7 2 0 4 1 0 16 1 0 38 6 5 16 2 1 50 86 74 281 1 0 5 1 2 100 1 0 79 2 0 681 chain 39834 chrX 155270560 + 85507882 85508385 L1PB1 5432 + 3427 3922 69571 301 6 0 8 2 0 186 chain 3085 chrX 155270560 + 85524305 85524382 L1MA2 4263 - 160 229 223175 24 30 22 23 chain 12733 chrX 155270560 + 85527038 85527195 L1PB4 2604 - 57 216 149320 32 0 2 125 chain 58586 chrX 155270560 + 85531359 85532344 L1MA1 4479 - 294 1249 53647 13 6 0 7 2 1 13 1 0 9 1 0 31 10 8 25 12 11 115 3 0 5 1 0 66 0 2 8 0 1 11 1 0 14 2 0 19 1 0 71 22 19 21 1 0 97 12 10 88 1 0 108 6 0 7 11 16 115 15 11 12 1 0 21 chain 96436 chrX 155270560 + 85532348 85533614 HSMAR1 1287 + 4 1274 37695 120 0 1 224 1 3 165 6 7 40 1 0 94 0 3 6 12 9 74 10 8 399 0 4 86 1 0 27 chain 380525 chrX 155270560 + 85533741 85538873 L1PA7 6471 + 495 6457 10738 532 0 1 89 0 2 55 0 10 103 0 14 89 0 1 169 0 1 160 1 67 621 0 2 222 13 15 256 0 2 143 11 961 763 25 26 186 9 7 329 0 13 96 4 79 39 15 14 55 5 4 38 312 0 141 1 0 136 0 1 54 0 1 234 0 2 80 0 1 12 9 8 33 0 3 92 chain 28745 chrX 155270560 + 85537774 85538080 AluYa5 310 - 5 310 90148 187 1 0 118 chain 26480 chrX 155270560 + 85541118 85541411 AluYb8 318 - 6 297 98124 32 0 1 161 3 0 97 chain 535100 chrX 155270560 + 85544427 85550428 L1PA3long 6157 - 1 6139 3581 1518 1 0 2307 0 1 4 2 0 116 0 4 160 10 0 8 0 10 1124 5 136 439 6 9 166 13 0 16 0 14 106 chain 23825 chrX 155270560 + 85555422 85555698 L1PA4 6152 + 5880 6151 111335 121 6 0 37 0 1 112 chain 443521 chrX 155270560 + 85561835 85567458 HERVL-int 5654 + 0 5654 8937 20 5 0 280 0 1 823 1 0 255 39 36 148 1 16 358 0 1 263 1 0 54 0 1 402 0 2 6 22 23 93 0 11 108 11 15 17 1 2 110 2 1 74 0 1 358 4 0 9 0 1 54 10 8 73 5 0 24 6 8 827 6 10 813 13 14 20 0 4 80 0 1 5 0 1 96 1 0 4 0 1 115 0 1 6 chain 9115 chrX 155270560 + 85579060 85579219 LTR19C 757 - 600 757 164993 48 5 2 11 0 1 5 1 0 26 1 0 19 15 17 28 chain 211735 chrX 155270560 + 85588764 85591383 L1PA7 6471 - 4 2633 18357 38 1 0 53 8 0 7 0 8 4 0 1 224 0 1 204 3 0 3 1 0 4 0 1 169 0 1 128 1 0 611 0 8 47 2 0 113 0 1 169 6 10 661 0 1 162 chain 214758 chrX 155270560 + 85591383 85594186 L1P2 5180 + 760 3611 18181 16 7 22 142 22 42 468 1 0 6 0 1 481 12 27 397 6 0 73 0 3 340 9 12 80 4 0 401 0 2 338 chain 360916 chrX 155270560 + 85605181 85609026 L1HS 6032 - 807 4653 11343 678 0 1 3167 chain 75330 chrX 155270560 + 85609027 85609835 L1HS 6032 + 5224 6032 45858 808 chain 77978 chrX 155270560 + 85610334 85611676 L1PA15 4387 - 186 1344 44525 16 1 0 55 1 0 26 1 0 32 0 1 46 191 20 73 1 0 42 9 5 55 4 0 10 2 1 6 1 0 54 6 5 23 0 4 18 0 1 23 19 17 356 5 4 111 0 1 8 1 0 16 9 8 121 chain 545976 chrX 155270560 + 85650392 85656527 L1PA4 6152 - 1 6149 1948 1519 1 0 885 0 1 235 0 2 344 1 0 466 0 5 260 0 4 479 0 1 705 2 1 85 0 3 1153 chain 27593 chrX 155270560 + 85665981 85666436 MLT2A1 477 - 0 477 94371 42 33 50 132 18 13 49 3 0 5 0 4 8 1 5 26 0 1 53 13 17 72 chain 268320 chrX 155270560 + 85666437 85669866 HERVL-int 5654 - 1 4602 15271 222 1 2 213 1 0 77 0 1 40 2 3 190 0 3 491 0 1137 319 0 1 31 0 1 216 35 58 106 1 2 229 5 10 60 0 1 76 7 6 211 0 10 174 8 0 645 3 0 66 chain 6683 chrX 155270560 + 85669952 85670034 MLT2A1 477 - 387 469 179813 82 chain 3864 chrX 155270560 + 85696085 85696160 L1MA3 4352 - 20 91 209382 4 1 0 11 1 0 29 11 9 18 chain 25934 chrX 155270560 + 85700237 85700524 L1HS 6032 + 5745 6028 100279 276 4 0 7 chain 293470 chrX 155270560 + 85701296 85704427 L1HS 6032 - 0 3131 13798 3131 chain 5679 chrX 155270560 + 85713812 85713880 L1PA7 6471 + 6249 6317 188309 68 chain 12553 chrX 155270560 + 85713881 85714027 L1PA7 6471 + 6319 6465 150029 146 chain 104952 chrX 155270560 + 85718374 85719688 L1PA8 5853 + 4541 5853 35510 465 5 7 70 1 3 434 0 1 43 1 0 45 2 0 69 2 1 15 7 6 40 2 1 19 1 0 93 chain 13311 chrX 155270560 + 85721455 85721660 THE1C-int 1605 - 0 208 147046 19 26 29 9 0 1 54 1 0 96 chain 5034 chrX 155270560 + 85726791 85726892 L1MA8 2339 + 2163 2256 194786 31 6 0 12 5 0 8 0 5 15 3 1 21 chain 32268 chrX 155270560 + 85737429 85737775 L1PA2 6032 - 391 737 80408 346 chain 33963 chrX 155270560 + 85737775 85738154 L1PA2 6032 + 5651 6032 77672 229 0 2 150 chain 3474 chrX 155270560 + 85754841 85754965 MER63A 208 - 6 122 215767 28 72 64 24 chain 11212 chrX 155270560 + 85757767 85757969 MER30 238 + 0 238 155381 23 37 38 48 0 31 56 3 7 35 chain 48258 chrX 155270560 + 85790633 85791323 LTR30 714 - 10 714 60272 13 1 0 24 19 21 11 6 5 11 6 3 152 10 21 104 9 10 58 13 18 253 chain 24910 chrX 155270560 + 85798724 85798998 L1PA3long 6157 + 5883 6157 105282 274 chain 44724 chrX 155270560 + 85807985 85808534 MLT2A2 560 - 0 560 63356 146 6 17 397 chain 2976 chrX 155270560 + 85808534 85808568 HERVL-int 5654 - 0 34 225515 34 chain 294415 chrX 155270560 + 85812360 85815510 L1HS 6032 - 1418 4572 13741 376 0 4 2774 chain 129693 chrX 155270560 + 85815510 85816916 L1PA2 6032 + 4626 6031 28093 1392 1 0 13 chain 18338 chrX 155270560 + 85826300 85826507 L1PA4 6152 - 0 206 131962 18 1 0 188 chain 18195 chrX 155270560 + 85827042 85827253 L1PA5 6144 + 5930 6141 132339 211 chain 54010 chrX 155270560 + 85845819 85846444 L1PA4 6152 - 1 618 56356 154 7 0 156 5 6 8 2 0 293 chain 21323 chrX 155270560 + 85852857 85853197 THE1B 368 - 0 368 122786 69 0 2 54 59 69 6 1 0 107 0 17 44 chain 33590 chrX 155270560 + 85853805 85854188 L1PA5 6144 - 0 380 78255 8 3 0 372 chain 47396 chrX 155270560 + 85862601 85863120 L1PA3long 6157 - 2 521 60904 519 chain 28006 chrX 155270560 + 85863120 85863423 L1PA3long 6157 + 5347 5650 92982 303 chain 21680 chrX 155270560 + 85872130 85872535 L1PREC2 3366 - 505 891 121470 7 3 0 4 1 0 43 21 20 35 2 0 11 11 1 29 22 18 159 24 26 33 chain 29104 chrX 155270560 + 85878770 85879080 AluYg6 310 + 0 310 88530 310 chain 5080 chrX 155270560 + 85908094 85908241 L1PREC2 3366 - 333 460 194297 21 11 9 25 29 15 10 9 7 24 2 0 16 chain 6741 chrX 155270560 + 85908584 85908666 L1PA13 3608 - 2931 3011 179385 47 2 0 33 chain 22197 chrX 155270560 + 85917324 85917608 AluSc8 310 + 10 297 119367 98 12 6 18 0 3 44 0 6 112 chain 65595 chrX 155270560 + 85942272 85943053 L1PA7 6471 + 5686 6468 50295 12 0 2 10 1 0 758 chain 12300 chrX 155270560 + 85947221 85947367 L1PA5 6144 - 0 155 151011 110 0 2 25 0 7 11 chain 40290 chrX 155270560 + 85959672 85960433 L1PB1 5432 + 4737 5422 68890 277 0 6 82 65 12 21 1 0 7 35 28 50 27 25 36 1 0 15 22 12 16 3 1 7 1 0 5 13 11 22 1 0 20 1 0 14 2 1 17 chain 6880 chrX 155270560 + 85992973 85993208 MLT1D 503 - 219 452 178356 9 1 0 30 106 100 28 13 18 48 chain 19132 chrX 155270560 + 85995360 85995571 L1PA3long 6157 - 2 213 129739 211 chain 23996 chrX 155270560 + 86006111 86006545 L1PREC2 3366 + 1710 2093 110357 12 21 12 23 23 25 103 9 10 81 45 0 117 chain 27119 chrX 155270560 + 86016044 86016386 L1PA8 5853 - 0 336 95871 93 1 0 19 2 1 61 2 1 70 2 0 44 1 0 47 chain 24260 chrX 155270560 + 86016392 86016685 L1PA8 5853 + 5186 5479 108891 293 chain 68637 chrX 155270560 + 86031610 86032379 L1PA5 6144 - 18 788 48964 622 0 1 147 chain 90094 chrX 155270560 + 86035554 86036649 HERVL-int 5654 - 4550 5654 39616 76 0 2 405 2 3 305 0 5 51 0 1 256 chain 25825 chrX 155270560 + 86041807 86042161 THE1B 368 + 0 368 100771 43 19 34 99 1 0 192 chain 67141 chrX 155270560 + 86050627 86051433 LTR12 884 - 15 884 49591 492 2 0 152 0 66 134 1 0 25 chain 13804 chrX 155270560 + 86054393 86054565 L1P3 4156 + 0 172 145254 172 chain 20360 chrX 155270560 + 86068364 86068615 AluY 311 + 41 283 126032 85 9 0 157 chain 82454 chrX 155270560 + 86078623 86079692 MER11A 1151 - 0 1151 42562 179 0 1 55 0 1 59 38 21 145 5 6 128 4 5 257 4 0 140 0 99 55 chain 36365 chrX 155270560 + 86104839 86105439 L1PB2 3958 - 120 734 74411 43 0 1 4 1 0 8 37 51 52 1 0 62 1 0 72 1 0 61 1 0 33 4 0 12 2 0 18 1 19 28 5 0 14 8 7 44 2 0 74 0 1 4 1 0 6 chain 145484 chrX 155270560 + 86109343 86110997 L1PA5 6144 - 0 1654 25257 1654 chain 18974 chrX 155270560 + 86117199 86117410 L1PA2 6032 + 5819 6030 130170 211 chain 12839 chrX 155270560 + 86123085 86123330 L1M1 2793 - 1698 1940 148885 61 8 10 21 1 0 48 9 0 9 10 18 14 24 21 40 chain 229527 chrX 155270560 + 86127074 86130023 HERVL-int 5654 + 24 3000 17324 267 8 7 112 1 5 104 7 8 34 0 25 802 11 0 282 17 18 164 0 1 262 1 2 159 5 8 196 0 4 479 1 0 37 chain 31600 chrX 155270560 + 86138817 86139175 L1PA3long 6157 - 5 363 81490 358 chain 30325 chrX 155270560 + 86139175 86139503 L1PA3long 6157 + 5506 5834 83855 328 chain 72141 chrX 155270560 + 86148854 86149756 L1PA7 6471 - 3 899 47409 7 7 0 139 8 11 194 5 4 403 1 0 6 8 9 74 2 1 48 chain 147471 chrX 155270560 + 86150626 86152465 L1P3 4156 + 67 1904 24969 184 12 11 56 11 13 5 3 0 72 0 1 1440 1 0 55 chain 110307 chrX 155270560 + 86153785 86155127 L1P3 4156 - 21 1364 34123 19 1 0 9 8 6 205 0 1 314 0 1 59 0 1 17 5 6 705 chain 70930 chrX 155270560 + 86155133 86156007 HERVL-int 5654 - 4740 5629 47950 65 0 1 415 1 13 323 0 2 70 chain 29249 chrX 155270560 + 86156358 86156818 MLT2A1 477 - 1 473 87795 48 4 0 11 64 64 8 0 16 159 4 1 126 0 1 24 0 2 12 chain 20643 chrX 155270560 + 86161999 86162298 L1MA2 4263 + 3756 4050 125149 36 17 14 151 1 0 8 1 0 85 chain 3693 chrX 155270560 + 86167969 86168053 MER4D 903 + 620 706 212030 43 28 30 13 chain 5448 chrX 155270560 + 86183360 86183439 MADE1 96 - 2 96 190543 46 3 18 30 chain 25022 chrX 155270560 + 86194523 86194798 L1PA3long 6157 + 5882 6157 104676 275 chain 45037 chrX 155270560 + 86206380 86206934 MER41A 554 - 0 554 63009 554 chain 16227 chrX 155270560 + 86206941 86207154 MER41-int 2638 - 0 215 137680 171 10 12 32 chain 30165 chrX 155270560 + 86219611 86220041 L1PA7 6471 + 6050 6469 84281 35 9 1 218 4 12 10 19 11 120 3 0 12 chain 552319 chrX 155270560 + 86224634 86230654 L1PA2 6032 + 7 6029 1158 1583 1 0 4 0 1 3073 0 2 1359 chain 4101 chrX 155270560 + 86235682 86235730 L1MA9 1812 + 476 524 205923 48 chain 27650 chrX 155270560 + 86236886 86237287 LTR7 482 + 0 482 94205 44 33 71 109 0 1 38 1 32 21 0 10 38 2 3 115 chain 287133 chrX 155270560 + 86237289 86240842 HERVH-int 3825 + 0 3825 14211 333 1 0 197 1 0 11 1 0 4 11 12 13 1 0 9 2 1 12 11 39 14 14 11 35 0 20 68 1 0 457 16 1 448 4 31 299 0 10 1045 9 11 39 8 218 244 4 0 16 0 2 225 chain 28650 chrX 155270560 + 86242089 86242482 LTR7 482 + 0 474 90520 69 8 46 109 0 1 38 1 32 19 0 10 41 1 2 107 chain 64520 chrX 155270560 + 86267686 86268480 LTR12 884 - 0 883 50790 507 2 0 29 8 9 117 1 92 105 1 0 24 chain 12233 chrX 155270560 + 86282382 86282529 THE1D 372 + 225 372 151288 147 chain 112696 chrX 155270560 + 86287660 86289001 SVA_B 1603 - 6 1603 33479 569 0 138 13 0 40 166 0 37 80 0 37 198 9 0 278 9 22 19 chain 49821 chrX 155270560 + 86334607 86335165 L1PA5 6144 - 9 565 59141 139 1 0 191 1 0 226 chain 278842 chrX 155270560 + 86367401 86370659 L1PA6 6164 + 2900 6162 14702 389 0 1 15 0 1 176 1 2 2259 0 1 418 chain 550376 chrX 155270560 + 86371309 86377340 L1PA2 6032 + 0 6030 1396 252 5 4 5774 chain 3094 chrX 155270560 + 86379076 86379116 L1MEf 1413 + 791 830 223029 17 1 0 22 chain 5643 chrX 155270560 + 86380179 86380250 L1PB 1623 - 1155 1224 188626 50 2 0 19 chain 3949 chrX 155270560 + 86380252 86380300 L1PB 1623 + 469 516 208138 15 1 0 32 chain 305257 chrX 155270560 + 86383338 86387230 L1P3 4156 + 16 4142 13203 61 0 1 150 4 0 8 13 27 57 1 0 798 3 16 24 0 1 109 4 6 97 0 1 397 1 5 924 2 1 196 13 220 403 0 1 12 1 0 85 1 0 4 0 1 200 5 6 171 2 1 108 2 0 9 2 1 25 chain 18384 chrX 155270560 + 86421814 86422018 L1PA2 6032 + 5828 6032 131832 204 chain 14286 chrX 155270560 + 86431963 86432141 L1PA7 6471 - 1404 1596 143598 22 1 15 155 chain 117014 chrX 155270560 + 86432143 86433546 L1PA7 6471 + 5064 6468 32118 550 2 4 20 0 1 61 2 3 183 1 2 573 4 0 7 chain 18961 chrX 155270560 + 86447720 86448025 L1PA8 5853 - 4 301 130201 52 0 2 33 3 2 19 2 1 52 1 0 9 13 9 58 9 7 43 1 0 10 chain 6886 chrX 155270560 + 86464155 86464256 MER54A 897 - 181 274 178305 78 8 0 15 chain 132144 chrX 155270560 + 86475566 86477036 L1PA3long 6157 + 4679 6152 27609 628 0 1 699 1 3 142 chain 27668 chrX 155270560 + 86477815 86478197 MLT2A1 477 + 0 385 94159 17 0 4 135 21 18 5 0 1 23 1 2 180 chain 380354 chrX 155270560 + 86478281 86483186 HERVL-int 5654 + 6 5654 10745 97 3 2 549 1 0 14 25 7 7 0 18 238 16 11 169 1 0 106 0 1 418 18 756 249 0 2 39 0 1 5 2 1 801 6 8 264 44 56 971 1 0 427 8 6 334 1 0 91 chain 30132 chrX 155270560 + 86483190 86483567 MLT2A1 477 + 4 381 84378 165 4 1 9 0 1 24 3 5 172 chain 4367 chrX 155270560 + 86488055 86488107 L1PA8 5853 - 0 52 202358 52 chain 78360 chrX 155270560 + 86492578 86493576 HERVL-int 5654 - 0 985 44340 217 4 5 149 0 1 47 31 16 550 chain 33071 chrX 155270560 + 86503765 86504197 MER57A1 433 - 0 433 79096 151 12 13 269 chain 440856 chrX 155270560 + 86509363 86514776 L1PA7 6471 + 1111 6469 9032 147 0 3 490 1 0 461 7 8 257 0 1 163 2 0 442 40 5 424 2 1 32 10 14 47 0 1 402 1 0 244 0 1 193 28 0 304 0 1 768 1 2 99 1 0 127 0 1 720 chain 150240 chrX 155270560 + 86531901 86533651 L1PA5 6144 - 12 1763 24577 112 0 1 17 7 5 6 0 2 701 1 0 377 0 1 529 chain 25507 chrX 155270560 + 86533651 86533964 L1P1 4361 + 3322 3635 100032 313 chain 66585 chrX 155270560 + 86544980 86545744 L1PA6 6164 - 3 768 49836 334 0 1 430 chain 80064 chrX 155270560 + 86550337 86551259 L1PA4 6152 + 5233 6143 43557 70 1 5 273 18 2 560 chain 254235 chrX 155270560 + 86556761 86560058 L1PA8A 6298 - 7 3150 16019 130 2 0 198 1 0 224 0 1 243 0 3 124 1 0 68 2 0 478 115 0 385 3 0 250 0 1 273 0 1 36 36 0 370 0 1 57 0 5 36 9 2 38 1 0 199 5 7 13 chain 6056 chrX 155270560 + 86560058 86560145 L1PA8A 6298 + 3053 3135 184224 59 6 1 22 chain 53804 chrX 155270560 + 86569057 86569818 MER4-int 2692 + 1919 2692 56475 31 4 9 61 0 3 100 1 0 18 12 13 31 2 0 82 1 0 199 14 13 16 1 0 15 1 0 54 0 10 97 6 5 9 0 1 6 chain 31761 chrX 155270560 + 86571988 86572395 MER48 407 - 0 407 81229 140 10 11 209 1 0 47 chain 17373 chrX 155270560 + 86577827 86578029 L1PA2 6032 + 5814 6009 134587 61 7 0 134 chain 136643 chrX 155270560 + 86600912 86602411 L1PA3long 6157 - 373 1873 26704 405 0 1 1094 chain 35107 chrX 155270560 + 86602411 86602801 L1PA3long 6157 + 5768 6157 76041 186 1 0 203 chain 40548 chrX 155270560 + 86604080 86604616 MLT2A2 560 - 0 556 68517 83 0 6 58 7 18 79 1 4 308 chain 320436 chrX 155270560 + 86604631 86608888 HERVL-int 5654 - 5 4294 12576 218 4 0 398 0 10 56 5 6 58 0 3 428 40 47 153 11 23 244 3 4 153 1 0 305 0 8 127 6 5 438 19 22 50 9 1 600 0 1 4 1 0 8 17 22 35 18 18 117 0 1 147 5 6 563 6 0 10 chain 41990 chrX 155270560 + 86619390 86619867 MER9a3 513 + 14 491 66640 477 chain 21257 chrX 155270560 + 86637621 86637969 THE1B-int 1605 + 1338 1600 123001 179 86 0 83 chain 4619 chrX 155270560 + 86637820 86637876 THE1B-int 1605 + 1538 1594 199422 56 chain 21116 chrX 155270560 + 86637974 86638329 THE1B 368 + 0 357 123508 13 2 0 27 9 14 19 47 48 51 2 1 120 1 0 64 chain 3729 chrX 155270560 + 86664665 86664704 LTR25 836 + 401 440 211484 39 chain 184606 chrX 155270560 + 86667755 86669821 L1PA4 6152 - 1 2066 20536 1013 1 0 1052 chain 9501 chrX 155270560 + 86673389 86673509 L1PB1 5432 + 4965 5085 163070 120 chain 11407 chrX 155270560 + 86678829 86679047 L1PA8 5853 - 41 254 154667 52 1 0 19 7 6 33 37 36 58 2 0 9 chain 7868 chrX 155270560 + 86680041 86680214 LTR43B 570 - 185 358 171883 24 59 59 90 chain 538737 chrX 155270560 + 86698129 86704264 L1PA4 6152 - 1 6141 3037 148 1 0 17 7 9 669 0 4 332 7 8 350 0 3 729 7 8 1329 0 2 1967 2 1 115 6 0 449 chain 92316 chrX 155270560 + 86720826 86721885 SVA_C 1631 + 507 1631 38878 211 4 1 118 0 42 124 0 1 10 0 25 592 chain 48531 chrX 155270560 + 86723150 86723866 L1PB2 3958 + 123 817 60086 15 2 0 29 17 11 52 3 0 200 4 0 5 7 0 3 1 0 5 0 1 107 6 5 39 0 4 7 4 0 76 0 1 134 chain 13163 chrX 155270560 + 86729666 86729844 MER11A 1151 - 874 1150 147605 49 1 0 74 1 100 53 chain 87798 chrX 155270560 + 86754549 86755507 L1PA3long 6157 - 1085 2044 40452 87 0 1 871 chain 95439 chrX 155270560 + 86755508 86756569 L1PA3long 6157 + 5089 6150 37976 1061 chain 9015 chrX 155270560 + 86756714 86756855 MLT1B 390 + 233 377 165519 20 7 9 66 3 4 45 chain 15703 chrX 155270560 + 86759274 86759454 L1PA3long 6157 - 13 193 139257 180 chain 31918 chrX 155270560 + 86769506 86769887 MLT2A1 477 + 0 385 80984 140 0 1 28 0 4 150 1 0 62 chain 3446 chrX 155270560 + 86778627 86778668 L1MC3 1789 + 1334 1375 216258 41 chain 168279 chrX 155270560 + 86785272 86787821 L1PA2 6032 - 0 1887 22250 747 5 6 93 0 4 320 667 0 717 chain 18590 chrX 155270560 + 86786458 86786670 L1P1 4361 + 4106 4316 131258 44 1 0 155 1 0 11 chain 82325 chrX 155270560 + 86787821 86788717 L1PA3long 6157 + 5261 6157 42616 896 chain 28965 chrX 155270560 + 86797458 86797866 THE1D-int 1627 + 1234 1609 89158 109 33 0 266 chain 145934 chrX 155270560 + 86809522 86811177 L1P1 4361 - 20 1673 25179 12 2 1 23 1 0 60 0 1 94 1 0 1462 chain 45086 chrX 155270560 + 86811182 86811681 L1PA3long 6157 + 5654 6151 62958 258 2 0 239 chain 12267 chrX 155270560 + 86820934 86821076 L1PA8A 6298 + 6149 6291 151124 142 chain 21160 chrX 155270560 + 86830196 86830492 MER1B 344 + 50 344 123341 167 4 0 49 18 20 58 chain 41863 chrX 155270560 + 86837700 86838305 LTR12F 595 - 0 595 66814 268 4 3 40 0 24 43 16 7 25 0 8 33 3 1 11 25 0 27 7 2 103 chain 25355 chrX 155270560 + 86855209 86855507 AluY 311 + 1 304 102918 6 0 1 64 0 3 97 0 1 131 chain 93366 chrX 155270560 + 86863770 86864836 L1PA5 6144 - 4 1071 38546 119 1 0 188 0 3 536 1 0 221 chain 9202 chrX 155270560 + 86885380 86885479 L1PA4 6152 - 5 104 164544 99 chain 211278 chrX 155270560 + 86898069 86901018 L1PB1 5432 + 2460 5400 18416 73 0 5 72 13 16 18 20 29 148 1 0 21 2 0 132 0 5 214 11 13 56 1 2 468 2 0 288 3 4 141 1 5 135 0 1 320 3 0 82 0 1 394 1 2 8 4 1 24 1 0 5 21 16 8 2 0 53 2 1 9 8 7 43 1 0 25 17 4 18 8 5 14 2 0 24 1 0 21 1 0 9 chain 8042 chrX 155270560 + 86901052 86901149 L1PB1 5432 + 3626 3723 170800 97 chain 9727 chrX 155270560 + 86901162 86901281 L1PB1 5432 + 3732 3852 161952 4 0 1 115 chain 53606 chrX 155270560 + 86901281 86902004 L1PB1 5432 + 3853 4579 56610 476 7 2 37 4 5 100 0 5 85 0 2 14 chain 9438 chrX 155270560 + 86902004 86902127 L1PB1 5432 + 4587 4707 163371 41 3 0 79 chain 28679 chrX 155270560 + 86902130 86902524 L1PB1 5432 + 4709 5098 90414 128 0 1 4 1 0 10 0 1 208 1 2 9 8 1 25 chain 11400 chrX 155270560 + 86902529 86902722 L1PB1 5432 + 5110 5296 154697 24 1 0 10 1 0 14 8 4 6 2 0 52 14 16 45 1 0 15 chain 3693 chrX 155270560 + 86902767 86902820 L1PB1 5432 + 5345 5396 212027 25 1 0 22 1 0 4 chain 9218 chrX 155270560 + 86906185 86906294 THE1A 353 - 244 353 164467 109 chain 39437 chrX 155270560 + 86931349 86931847 LTR10D 510 - 0 510 70108 126 0 1 112 3 4 33 0 1 132 0 1 9 0 8 12 6 0 6 1 0 10 0 7 48 chain 41435 chrX 155270560 + 86932188 86932736 MLT2A2 560 - 2 560 67372 68 0 1 76 3 14 88 1 0 103 16 15 193 chain 48622 chrX 155270560 + 86935719 86936403 LTR30 714 + 0 704 60015 253 0 5 71 5 6 108 7 18 149 1 2 12 0 1 5 25 24 18 2 5 14 1 0 13 chain 39118 chrX 155270560 + 86936679 86937129 LTR7 482 + 0 482 70578 45 1 2 217 0 31 187 chain 296326 chrX 155270560 + 86937131 86940931 HERVH-int 3825 + 0 3823 13626 219 0 1 309 143 16 25 2 1 8 2 1 10 4 0 13 7 1 15 1 0 11 27 1 17 30 8 42 2 1 18 26 13 49 1 0 39 0 1 404 15 0 92 0 1 125 0 1 239 8 35 1404 8 218 485 chain 40865 chrX 155270560 + 86942193 86942644 LTR7 482 + 0 482 68072 264 0 31 187 chain 26283 chrX 155270560 + 86943958 86944266 L1PA5 6144 + 5838 6144 98890 297 2 0 9 chain 4650 chrX 155270560 + 86946201 86946256 L1PA16 3655 + 2513 2568 199061 55 chain 262136 chrX 155270560 + 86979011 86982659 MER61-int 3695 - 0 3656 15574 49 0 1 173 12 11 106 3 0 204 3 1 4 0 1 72 0 1 51 1 0 51 0 1 4 1 0 68 53 49 83 1 0 149 0 1 14 38 52 308 4 3 106 6 9 495 0 5 57 13 27 25 0 1 32 0 1 4 0 1 41 1 0 183 0 1 75 6 11 147 3 0 201 0 1 175 2 0 97 7 6 75 0 6 12 32 0 20 0 3 5 8 6 87 0 4 25 0 1 22 1 0 225 1 0 7 chain 74480 chrX 155270560 + 87019665 87020626 L1PA8 5853 - 0 963 46286 60 1 12 20 5 4 16 2 1 39 8 1 7 0 6 8 2 1 70 2 0 44 1 0 555 1 0 7 1 0 112 chain 328936 chrX 155270560 + 87033114 87037214 L1P3 4156 + 0 4114 12238 251 1 0 68 2 1 125 3 4 163 1 0 242 1 0 353 0 4 140 0 2 5 3 0 460 1 2 318 0 1 173 8 7 308 8 5 122 0 4 133 0 1 293 0 1 110 10 20 287 0 1 491 0 1 11 2 0 7 chain 30439 chrX 155270560 + 87051552 87052229 L1PB2 3958 + 25 634 83550 27 29 24 8 5 0 18 164 106 19 13 10 120 5 6 107 0 2 26 7 8 66 1 0 62 chain 6089 chrX 155270560 + 87054847 87055027 L1MA9 1812 - 478 658 184494 57 82 83 4 1 0 36 chain 103456 chrX 155270560 + 87062818 87064233 LTR12C 1709 - 0 1709 35883 84 6 5 62 1 0 276 0 1 53 11 4 106 3 1 5 1 0 132 0 278 232 18 7 73 9 52 55 2 1 5 16 0 17 28 29 37 0 1 51 0 10 132 chain 26494 chrX 155270560 + 87072108 87072412 AluSp 311 - 7 311 98068 304 chain 562803 chrX 155270560 + 87076407 87082419 L1HS 6032 + 0 6028 273 486 1 0 251 0 16 145 1 0 2541 0 1 621 0 1 1966 chain 63576 chrX 155270560 + 87082984 87083683 L1PA4 6152 - 13 712 51202 699 chain 81047 chrX 155270560 + 87083696 87084590 L1PA4 6152 + 4575 5469 43168 894 chain 9094 chrX 155270560 + 87108243 87108356 L1PA8 5853 - 0 112 165098 93 1 0 19 chain 6659 chrX 155270560 + 87108474 87108558 L1PA8 5853 + 5711 5793 180008 32 1 0 17 1 0 33 chain 16854 chrX 155270560 + 87108622 87108842 L1PA8 5853 + 5637 5853 135961 42 1 0 9 1 0 56 1 0 16 1 0 93 chain 4111 chrX 155270560 + 87115265 87115313 L1P3 4156 + 2580 2628 205755 48 chain 16835 chrX 155270560 + 87115314 87115510 L1P3 4156 + 2630 2827 136028 30 0 1 166 chain 133274 chrX 155270560 + 87125537 87127059 L1PA4 6152 + 4641 6152 27378 1251 1 0 209 14 0 33 1 0 7 0 5 6 chain 32171 chrX 155270560 + 87131329 87131717 HERVL-int 5654 + 2615 3003 80581 388 chain 206156 chrX 155270560 + 87131717 87134293 HERVL-int 5654 + 1777 4369 18780 261 0 10 13 20 4 138 0 3 185 0 4 295 0 1 225 0 6 113 2 16 414 11 0 37 0 4 96 0 1 766 chain 7609 chrX 155270560 + 87157745 87157951 MER4B 649 + 243 460 173481 67 71 88 23 2 0 5 18 14 20 chain 7997 chrX 155270560 + 87166500 87166598 MER4E 760 - 7 105 171085 98 chain 62794 chrX 155270560 + 87194000 87195097 LTR12D 1347 - 0 1347 51542 198 8 0 2 8 0 14 15 113 19 1 9 63 21 9 53 0 1 4 1 0 84 0 1 63 0 16 14 0 150 201 153 152 130 24 30 21 chain 14429 chrX 155270560 + 87195139 87195451 THE1D 372 - 47 345 143121 9 0 1 4 1 0 70 72 77 70 37 18 49 chain 47338 chrX 155270560 + 87209803 87210360 L1PA7 6471 + 5911 6468 60941 225 0 1 102 0 1 221 2 0 7 chain 83478 chrX 155270560 + 87241487 87242439 L1PA4 6152 - 1461 2413 41970 62 1 0 690 0 1 199 chain 124899 chrX 155270560 + 87242439 87243852 L1PA4 6152 + 4725 6143 29425 166 2 1 90 0 1 315 0 4 515 0 1 325 chain 138720 chrX 155270560 + 87259262 87260806 L1PA3long 6157 - 2 1545 26364 1191 1 0 352 chain 121075 chrX 155270560 + 87262764 87264210 L1PA7 6471 - 14 1460 30562 757 0 2 77 1 0 78 1 0 532 chain 126726 chrX 155270560 + 87264210 87265762 L1P3 4156 + 2592 4139 28874 896 4 3 245 1 0 371 2 0 7 2 1 24 chain 59230 chrX 155270560 + 87286213 87286865 L1PA4 6152 - 8 662 53261 36 0 2 616 chain 319505 chrX 155270560 + 87288196 87291643 L1PA2 6032 - 0 3447 12615 3447 chain 39198 chrX 155270560 + 87329184 87329628 L1PA6 6164 + 5712 6156 70457 444 chain 75493 chrX 155270560 + 87338835 87339688 L1PA4 6152 - 9 862 45771 853 chain 7720 chrX 155270560 + 87341054 87341222 L1PA15 4387 - 42 196 172795 16 21 15 44 20 17 36 1 0 16 4 0 10 chain 2880 chrX 155270560 + 87345638 87345670 THE1D 372 + 340 372 227368 32 chain 109509 chrX 155270560 + 87367023 87368435 L1PA10 4194 - 33 1456 34315 11 1 0 24 12 9 41 17 16 325 0 2 29 0 3 355 0 1 16 0 1 155 0 10 207 3 0 30 0 2 186 chain 22436 chrX 155270560 + 87373481 87373771 AluY 311 + 4 303 118317 128 0 1 18 0 6 109 1 3 34 chain 76827 chrX 155270560 + 87428796 87429891 MER11A 1151 - 0 1151 45071 163 6 7 60 0 1 17 2 1 5 0 1 12 18 0 22 44 27 142 9 10 144 0 1 94 0 1 149 4 0 66 1 0 50 8 0 20 1 100 58 chain 550448 chrX 155270560 + 87462886 87468920 L1PA2 6032 + 0 6030 1382 257 1 0 3288 1 2 280 1 0 67 1 0 2128 2 0 8 chain 37469 chrX 155270560 + 87498021 87498491 MER41A 554 - 85 554 72859 150 2 1 318 chain 29249 chrX 155270560 + 87504370 87504755 MER75 514 + 89 494 87793 83 0 21 45 6 5 251 chain 4807 chrX 155270560 + 87529539 87529607 THE1D 372 + 271 340 197272 32 1 2 35 chain 83596 chrX 155270560 + 87534763 87535782 L1PA7 6471 + 5435 6450 42074 186 1 0 79 4 6 46 7 1 73 0 1 623 chain 114144 chrX 155270560 + 87544197 87546575 L1PB1 5432 + 2278 5427 33053 61 190 193 14 155 1230 186 1 0 141 12 12 91 1 0 103 0 1 70 0 1 69 14 15 61 5 1 96 1 2 82 0 1 128 17 17 229 301 32 20 1 0 12 4 0 12 5 1 9 2 0 52 2 1 16 1 0 43 1 0 12 32 20 16 23 18 24 1 0 21 1 0 13 1 0 18 3 0 5 chain 29454 chrX 155270560 + 87555065 87555376 AluYb8 318 - 7 318 86824 311 chain 69718 chrX 155270560 + 87562423 87563181 L1PA3long 6157 + 5400 6157 48514 147 1 0 610 chain 361353 chrX 155270560 + 87564840 87569495 L1PA8 5853 + 1167 5852 11332 434 4 5 419 0 1 460 0 2 256 0 1 4 3 4 22 1 2 120 2 1 11 1 2 4 1 0 5 0 1 349 0 21 101 1 0 281 0 1 385 0 2 305 1 0 102 0 1 206 0 1 62 0 1 271 2 0 256 0 1 297 1 0 21 4 0 23 2 0 56 28 26 50 8 7 13 2 1 15 31 41 35 chain 250062 chrX 155270560 + 87572193 87575771 L1PA5 6144 - 9 3901 16250 125 15 20 7 4 0 11 1 73 88 0 1 426 0 1 4 11 10 68 0 4 264 575 803 760 0 13 292 6 1 921 chain 169155 chrX 155270560 + 87575771 87577658 L1PA5 6144 + 4245 6132 22067 1887 chain 5520 chrX 155270560 + 87578725 87578813 L1PB3 3668 - 102 186 189836 37 3 1 24 3 1 21 chain 32550 chrX 155270560 + 87598419 87598860 LTR7 482 - 6 482 79942 152 0 3 5 0 1 18 0 31 149 17 16 21 1 2 78 chain 15074 chrX 155270560 + 87599248 87599485 MER50 708 - 22 260 141101 138 1 0 34 37 39 27 chain 82837 chrX 155270560 + 87599619 87600686 MER11B 1079 - 15 1079 42404 14 6 5 17 0 5 142 1 2 82 30 32 24 10 0 741 chain 26945 chrX 155270560 + 87609130 87609434 L1PA4 6152 + 5836 6140 96468 304 chain 3089 chrX 155270560 + 87616638 87616672 MSTB 430 + 2 36 223097 34 chain 9058 chrX 155270560 + 87622624 87622728 MSTA-int 1630 - 1501 1605 165272 104 chain 25643 chrX 155270560 + 87622762 87623178 THE1D 372 - 0 372 101527 26 7 8 145 0 3 107 1 11 27 63 5 40 chain 12140 chrX 155270560 + 87623184 87623402 MSTA 426 - 12 426 151651 94 49 244 48 1 2 26 chain 8034 chrX 155270560 + 87664530 87664722 L1PB1 5432 - 19 190 170843 9 1 0 13 1 0 20 2 1 20 28 23 19 24 12 16 1 0 38 chain 14286 chrX 155270560 + 87712662 87712834 PABL_A 660 - 480 660 143602 14 1 0 76 0 9 81 chain 176989 chrX 155270560 + 87722562 87725377 MER4-int 2692 + 126 2676 21252 28 0 1 228 3 11 6 7 0 86 0 1 6 1 0 103 0 1 26 0 5 89 2 1 37 11 15 130 0 2 10 6 5 59 3 7 122 1 0 48 1 0 222 4 0 15 6 22 22 1 0 8 0 4 19 10 7 5 0 1 84 0 1 133 0 4 31 0 2 26 0 2 128 1 0 65 309 0 114 0 1 32 0 1 23 2 0 15 1 2 40 3 0 5 6 0 85 0 3 7 3 4 65 6 11 97 4 3 33 1 0 17 1 0 54 0 10 43 0 1 56 chain 48219 chrX 155270560 + 87727335 87728150 MER57-int 2662 - 2 781 60303 35 3 0 18 6 0 7 10 11 7 1 0 16 3 8 10 1 0 5 1 0 22 2 0 15 14 2 53 33 27 11 5 0 12 0 5 61 24 19 98 3 0 288 0 1 11 12 9 28 chain 268798 chrX 155270560 + 87741354 87745118 L1PA8 5853 - 0 3528 15244 93 1 0 19 2 1 44 24 19 11 0 1 57 2 0 44 1 0 477 0 3 65 21 27 329 0 1 149 0 1 4 2 1 251 1 0 4 0 1 51 10 42 43 296 0 150 0 2 7 10 8 66 0 5 131 0 1 261 0 1 324 3 8 86 0 1 105 0 4 22 0 4 300 1 4 68 10 13 219 chain 27280 chrX 155270560 + 87743070 87743355 AluYb8 318 - 15 300 95341 285 chain 2898 chrX 155270560 + 87746360 87746392 MLT1A0 366 - 218 250 227075 32 chain 27410 chrX 155270560 + 87770785 87771088 AluYg6 310 - 8 310 94937 171 1 0 131 chain 20044 chrX 155270560 + 87785823 87786039 L1PA3long 6157 + 5941 6157 126997 216 chain 326776 chrX 155270560 + 87789358 87793080 L1PA5 6144 - 4 3729 12314 138 0 1 827 2 3 2581 0 1 141 3 1 9 0 2 21 chain 18480 chrX 155270560 + 87793215 87793461 LOR1b 457 - 118 360 131557 196 5 1 45 chain 24722 chrX 155270560 + 87801541 87801837 AluSc5 308 - 1 297 106314 296 chain 128358 chrX 155270560 + 87802994 87804415 L1PA4 6152 + 4731 6152 28483 548 1 0 729 0 1 143 chain 14706 chrX 155270560 + 87804507 87804835 Tigger2a 444 + 4 327 142258 29 105 107 25 13 6 156 chain 16337 chrX 155270560 + 87811678 87811891 L1PA7 6471 - 1 215 137376 4 1 0 188 8 10 12 chain 25354 chrX 155270560 + 87813910 87814207 AluSp 311 + 0 299 102923 64 0 2 233 chain 133326 chrX 155270560 + 87830724 87832555 L1PB1 5432 - 1139 3007 27365 78 1 0 215 10 0 230 0 1 44 3 0 89 0 4 81 9 7 51 1 2 5 0 4 91 8 15 60 6 12 211 0 1 77 16 12 133 22 22 105 0 3 115 0 5 6 5 0 41 0 37 34 19 12 65 chain 13102 chrX 155270560 + 87833311 87833650 L1PB1 5432 + 5102 5409 147837 12 1 0 24 27 21 9 2 0 43 29 27 41 2 1 15 25 13 16 27 22 24 1 0 21 1 0 13 1 0 5 chain 119853 chrX 155270560 + 87863910 87865329 L1PA7 6471 + 5033 6459 31103 592 1 5 88 0 3 738 chain 37060 chrX 155270560 + 87894791 87895207 L1PA5 6144 - 16 432 73441 416 chain 6062 chrX 155270560 + 87914208 87914378 L1PA15 4387 + 4145 4306 184730 40 1 0 20 76 68 33 chain 22366 chrX 155270560 + 87935621 87935872 L1PA4 6152 + 5892 6143 118645 251 chain 3845 chrX 155270560 + 87938840 87938886 MLT1A1 405 - 41 87 209721 46 chain 52390 chrX 155270560 + 87946660 87947413 LTR12 884 - 0 884 57363 45 0 3 108 0 103 144 5 20 84 15 12 19 41 0 188 12 0 14 1 67 77 chain 3416 chrX 155270560 + 87947080 87947121 LTR12 884 - 629 670 129377 41 chain 254636 chrX 155270560 + 87949207 87952423 L1PA7 6471 + 6 6468 16005 396 24 9 784 11 0 73 6 7 479 1 0 177 5 6 91 0 1 213 17 2144 52 0 1 538 35 1179 303 2 0 9 chain 152643 chrX 155270560 + 87957524 87959445 L1PA8A 6298 + 4355 6291 24273 75 0 1 719 0 1 15 0 2 321 15 12 17 3 15 176 6 8 574 chain 35719 chrX 155270560 + 87970137 87970550 MER11B 1079 - 638 1056 75244 78 0 5 335 chain 32702 chrX 155270560 + 87970581 87970975 L1PA8 5853 + 5216 5610 79681 66 3 4 278 1 0 46 chain 16186 chrX 155270560 + 87985212 87985776 L1MA1 4479 + 3597 4142 137799 118 1 0 24 2 0 16 1 0 20 5 0 18 1 0 9 263 257 15 15 14 14 7 5 35 chain 103508 chrX 155270560 + 88000500 88001891 LTR12C 1709 - 0 1709 35863 84 1 0 343 2 3 51 11 4 106 1 0 8 1 0 102 0 278 119 6 7 27 0 2 102 3 0 8 0 4 80 0 43 49 3 0 8 0 4 13 7 8 172 13 1 7 0 12 64 chain 102989 chrX 155270560 + 88005399 88006659 L1P3 4156 - 17 1290 35991 24 2 1 7 2 0 192 2 3 35 1 0 297 0 1 82 1 2 12 0 2 326 0 1 4 0 2 194 0 9 79 chain 26967 chrX 155270560 + 88034873 88035234 L1PB 1623 - 1043 1398 96378 95 1 0 74 1 0 8 3 0 134 2 1 43 chain 12497 chrX 155270560 + 88035677 88035977 L1PB1 5432 + 5146 5430 150255 10 2 0 3 2 0 9 2 0 50 18 18 29 16 15 16 2 0 8 1 0 23 2 0 5 1 0 14 2 0 26 0 1 4 12 14 13 1 0 8 1 0 10 1 0 4 1 0 4 chain 557862 chrX 155270560 + 88036410 88042563 L1PA3long 6157 - 0 6151 514 138 7 0 1725 0 2 602 0 1 1576 0 1 563 0 1 1542 chain 115264 chrX 155270560 + 88050371 88051730 L1PA6 6164 - 8 1368 32695 821 1 2 537 chain 436515 chrX 155270560 + 88055416 88060818 L1PA7 6471 + 1084 6468 9152 180 2 0 2148 1 5 406 29 10 715 1 0 4 0 1 396 1 0 36 1 0 160 6 4 170 15 14 288 0 3 343 1 2 18 0 1 313 0 1 6 1 2 144 3 0 14 chain 36856 chrX 155270560 + 88065095 88065729 L1PA14 3548 - 83 686 73724 10 6 0 41 1 0 9 16 14 13 4 2 32 6 2 11 1 0 78 1 2 30 1 0 79 13 11 17 4 0 109 9 5 46 3 1 11 5 4 18 2 0 58 chain 28295 chrX 155270560 + 88071688 88072055 L1PB1 5432 - 735 1101 91963 68 4 1 19 0 1 171 5 6 19 1 0 4 0 1 76 chain 44118 chrX 155270560 + 88072063 88072904 L1PB1 5432 + 4699 5424 64059 109 17 7 61 0 10 120 1 2 93 87 2 11 1 0 24 1 0 6 19 14 9 2 0 52 1 0 18 1 0 44 1 0 15 1 0 4 45 32 14 2 0 24 1 0 21 5 4 9 1 0 16 1 0 4 chain 15069 chrX 155270560 + 88074364 88074530 L1PA8 5853 - 846 1012 141115 166 chain 64075 chrX 155270560 + 88074540 88075385 L1PA8 5853 + 4999 5847 50979 7 0 8 69 4 5 354 4 5 115 1 0 32 2 0 14 2 0 68 5 4 10 1 0 49 3 2 19 1 0 71 0 2 14 chain 174854 chrX 155270560 + 88085991 88088144 HERVL-int 5654 - 3482 5654 21485 245 1 0 122 0 1 347 1 2 275 0 1 456 25 43 224 1 0 456 chain 31431 chrX 155270560 + 88088144 88088590 MLT2A1 477 - 0 477 81766 39 4 0 8 7 45 181 0 1 13 27 23 167 chain 12389 chrX 155270560 + 88088995 88089150 L1PA5 6144 - 1 162 150670 10 1 3 133 1 5 10 chain 47628 chrX 155270560 + 88092562 88093147 LTR22 571 - 0 571 60750 319 16 3 167 1 0 82 chain 110121 chrX 155270560 + 88101623 88103227 HERVK14-int 1672 - 63 1667 34175 90 1 0 5 8 6 17 0 3 9 1 0 63 1 0 19 8 9 4 1 0 76 1 0 203 8 7 27 2 0 7 1 0 3 1 0 78 7 6 158 1 0 6 9 10 190 28 27 19 2 1 199 0 18 13 2 0 31 6 5 128 6 5 26 3 5 8 2 0 40 1 0 47 1 0 11 1 0 25 chain 2878 chrX 155270560 + 88118180 88118268 L1MA8 2339 + 2172 2258 227399 24 39 37 25 chain 6118 chrX 155270560 + 88119111 88119421 LTR12D 1347 + 591 1083 184293 61 217 399 32 chain 7835 chrX 155270560 + 88141119 88141233 THE1D 372 + 222 336 172099 86 1 0 4 5 6 18 chain 39409 chrX 155270560 + 88159284 88159999 L1PB2 3958 - 38 694 70151 9 1 0 13 102 60 63 1 0 26 3 1 68 1 0 63 1 0 72 1 0 87 25 19 66 1 0 12 7 6 48 2 0 43 chain 19187 chrX 155270560 + 88165305 88165542 L1PA3long 6157 + 5919 6156 129568 83 1 8 10 7 0 136 chain 24094 chrX 155270560 + 88177125 88177422 AluSp 311 + 20 311 109767 108 6 0 183 chain 56661 chrX 155270560 + 88182277 88182933 L1PA7 6471 - 13 669 54745 656 chain 22410 chrX 155270560 + 88182948 88183227 L1PA7 6471 + 4580 4863 118440 91 0 4 21 0 1 4 1 0 162 chain 9766 chrX 155270560 + 88183232 88183349 L1PA7 6471 + 4867 4984 161763 117 chain 18221 chrX 155270560 + 88183355 88183566 L1PA7 6471 + 4992 5203 132280 211 chain 103063 chrX 155270560 + 88183582 88184808 L1PA7 6471 + 5219 6441 35972 405 2 0 262 18 16 539 chain 7240 chrX 155270560 + 88189442 88189564 L1PA16 3655 + 3389 3519 175834 61 1 0 5 13 20 19 0 2 23 chain 23844 chrX 155270560 + 88207408 88207710 L1PA5 6144 + 5832 6143 111222 147 11 12 99 0 8 45 chain 74248 chrX 155270560 + 88210788 88211747 MER11A 1151 + 0 1151 46388 55 0 99 76 0 4 60 0 11 83 0 1 143 0 13 134 0 1 63 0 4 70 0 1 16 1 59 101 0 1 92 1 0 64 chain 18761 chrX 155270560 + 88239216 88239584 LTR10G 522 - 158 522 130796 11 12 11 85 85 82 49 1 8 27 7 0 91 chain 46368 chrX 155270560 + 88240973 88241493 L1PA4 6152 + 5629 6152 61711 150 0 1 83 0 1 138 0 1 149 chain 4227 chrX 155270560 + 88246348 88246396 MER83 447 + 0 48 204206 48 chain 4108 chrX 155270560 + 88281803 88281848 U5 65 - 20 65 205792 45 chain 144813 chrX 155270560 + 88315241 88316815 L1PA3long 6157 - 957 2530 25353 974 1 0 599 chain 84192 chrX 155270560 + 88316816 88317790 L1PA3long 6157 + 5182 6155 41824 200 9 8 49 0 1 83 3 1 299 0 1 331 chain 13964 chrX 155270560 + 88324521 88324693 LTR29 598 + 379 551 144691 172 chain 147032 chrX 155270560 + 88328939 88331066 MER57-int 2662 - 3 2128 25016 30 8 5 10 30 25 8 1 0 25 3 0 6 1 0 7 1 0 26 2 0 11 14 2 68 24 18 85 3 1 228 13 15 164 25 27 33 7 9 14 17 0 195 0 1 40 0 1 201 1 0 84 0 1 20 1 0 6 0 1 450 0 39 49 7 10 4 0 1 205 chain 18034 chrX 155270560 + 88332034 88332247 L1PA5 6144 + 5929 6143 132770 202 1 2 10 chain 3035 chrX 155270560 + 88340072 88340106 L1M3 994 + 708 742 224286 34 chain 30959 chrX 155270560 + 88342574 88342977 MLT2A1 477 + 0 399 82589 100 0 1 68 4 1 11 0 1 22 0 1 180 4 0 14 chain 14840 chrX 155270560 + 88343146 88343345 HERVL-int 5654 + 0 198 141813 16 1 0 36 2 1 4 0 1 140 chain 3629 chrX 155270560 + 88343894 88343937 MADE1 96 + 53 96 213172 43 chain 55901 chrX 155270560 + 88345553 88346209 L1PA7 6471 - 19 689 55183 321 1 0 92 4 13 102 0 6 136 chain 45693 chrX 155270560 + 88369561 88370084 L1PA4 6152 + 5619 6143 62319 259 0 1 264 chain 54173 chrX 155270560 + 88388776 88389464 L1PA7 6471 - 6 696 56244 228 0 4 71 12 11 20 1 0 356 chain 33898 chrX 155270560 + 88389725 88390153 MER57A1 433 + 0 430 77777 280 3 5 145 chain 184078 chrX 155270560 + 88399339 88401590 L1PA7 6471 + 4201 6464 20584 464 10 16 490 0 7 257 8 9 53 1 0 124 1 0 79 8 10 319 1 2 428 3 0 5 chain 34333 chrX 155270560 + 88406357 88406833 MER9a3 513 + 15 492 77162 95 0 1 147 1 0 11 13 14 151 1 2 16 2 0 20 5 6 14 chain 35852 chrX 155270560 + 88419424 88419931 LTR10F 562 - 2 562 75057 251 9 11 20 5 0 13 13 17 17 5 1 36 0 56 138 chain 5115 chrX 155270560 + 88432078 88432178 MER5A 189 + 26 167 193915 58 25 66 17 chain 34174 chrX 155270560 + 88446520 88446956 LTR7 482 + 0 470 77385 77 0 1 154 1 32 155 12 14 37 chain 28844 chrX 155270560 + 88472174 88472475 AluYa5 310 - 9 310 89691 301 chain 29086 chrX 155270560 + 88480726 88481031 AluYa5 310 - 5 310 88609 305 chain 70878 chrX 155270560 + 88498776 88499610 L1PA6 6164 + 5333 6161 47970 796 1 0 24 5 0 8 chain 158950 chrX 155270560 + 88502623 88504464 L1PA5 6144 - 0 1853 23471 233 7 11 142 0 1 459 1 5 961 0 3 38 chain 20147 chrX 155270560 + 88504472 88504692 L1PA5 6144 + 4017 4237 126686 220 chain 6083 chrX 155270560 + 88504706 88504796 MLT2A2 560 + 484 560 184557 8 14 0 68 chain 266008 chrX 155270560 + 88521442 88525861 MER61-int 3695 - 20 3690 15392 28 13 14 279 25 0 95 0 1 97 1 0 4 8 5 80 0 3 44 19 16 5 0 2 139 11 10 86 1 0 152 14 1 190 1 2 37 13 3 270 6 9 97 4 0 363 1 5 289 0 1 100 7 8 60 18 19 57 688 0 187 13 0 146 0 2 13 14 4 10 0 10 90 3 0 99 7 6 125 1 2 138 2 1 88 4 5 4 1 0 120 3 1 7 1 0 41 chain 54819 chrX 155270560 + 88524058 88524742 LTR12_ 688 - 0 688 55823 296 14 18 374 chain 4314 chrX 155270560 + 88535697 88535749 L1PA17 2846 - 2173 2225 203047 52 chain 540741 chrX 155270560 + 88547633 88553652 L1PA3long 6157 + 4 6156 2699 14 4 5 129 0 1 623 0 128 178 5 8 1851 5 0 1589 0 4 897 0 1 724 chain 69378 chrX 155270560 + 88559944 88560762 L1PA7 6471 - 12 827 48652 261 0 1 66 4 1 328 1 0 158 chain 85605 chrX 155270560 + 88581859 88582965 MER11A 1151 + 0 1151 41305 79 0 8 143 1 0 64 0 11 192 0 2 5 7 5 174 1 2 85 2 1 91 7 5 18 0 35 165 14 8 58 chain 127616 chrX 155270560 + 88585046 88586592 LTR12C 1709 - 0 1709 28669 481 0 4 107 12 9 194 0 161 173 0 7 6 7 0 487 1 2 78 chain 47946 chrX 155270560 + 88625645 88626258 L1P1 4361 + 3717 4328 60525 425 7 6 157 2 1 22 chain 17690 chrX 155270560 + 88670174 88670479 L1PA16 3655 - 206 510 133729 4 0 1 20 7 8 47 0 1 4 22 23 40 17 13 87 1 0 56 chain 23628 chrX 155270560 + 88670559 88670844 AluSp 311 - 13 300 112421 16 0 1 147 0 1 122 chain 9381 chrX 155270560 + 88672329 88672772 LTR12D 1347 + 653 1081 163653 40 46 22 37 244 258 12 4 0 27 3 2 30 chain 3425 chrX 155270560 + 88672613 88672664 LTR12D 1347 + 1048 1098 216664 34 1 0 16 chain 37604 chrX 155270560 + 88687762 88688355 MER51C 639 + 0 603 72679 14 0 61 20 61 5 105 5 6 37 4 0 15 0 2 96 0 4 35 5 7 29 0 1 4 1 0 162 chain 10300 chrX 155270560 + 88718951 88719254 L1MA3 4352 - 84 357 159130 11 2 0 22 6 2 15 16 20 79 115 87 37 chain 25611 chrX 155270560 + 88720876 88721270 L1PB2 3958 + 3451 3838 101673 88 3 1 77 1 0 58 5 4 74 26 23 62 chain 3287 chrX 155270560 + 88721658 88721803 L1M3 994 + 705 835 219246 27 13 0 7 73 71 25 chain 5091 chrX 155270560 + 88736570 88736629 MLT2A2 560 + 0 59 194173 59 chain 94988 chrX 155270560 + 88773733 88774872 L1PA7 6471 - 17 1153 38100 177 6 0 645 8 11 303 chain 51344 chrX 155270560 + 88788118 88788740 LTR12_ 688 + 0 688 58069 80 0 66 367 1 0 165 0 1 9 chain 25248 chrX 155270560 + 88807085 88807446 THE1D 372 - 0 372 103487 32 1 0 147 1 0 6 18 21 91 1 11 64 chain 15589 chrX 155270560 + 88813360 88813653 L1PA5 6144 + 5920 6140 139614 126 21 15 20 67 0 59 chain 53689 chrX 155270560 + 88820568 88821255 MER4E1 777 - 7 702 56551 135 8 7 77 1 9 255 0 1 211 chain 7094 chrX 155270560 + 88842522 88842654 L1PA15 4387 + 4233 4356 176806 31 9 6 44 3 1 11 7 3 27 chain 109578 chrX 155270560 + 88873225 88874475 L1P2 5180 - 2708 3958 34248 1250 chain 138697 chrX 155270560 + 88874475 88876062 L1PA5 6144 + 4557 6144 26366 65 1 0 896 0 1 625 chain 113417 chrX 155270560 + 88881350 88883035 L1PB1 5432 - 9 1694 33247 9 1 0 10 2 1 11 1 0 22 1 0 24 0 1 4 3 0 9 1 0 4 6 4 16 25 13 15 1 0 44 7 6 9 2 1 21 0 2 27 18 12 14 16 14 16 3 0 5 1 6 32 9 10 186 1 28 221 1 0 75 0 1 170 1 0 393 17 15 9 0 1 79 0 1 95 1 2 47 chain 71337 chrX 155270560 + 88892136 88892961 L1PA5 6144 - 2 824 47776 7 4 0 618 0 1 196 chain 50070 chrX 155270560 + 88892961 88893556 L1PA5 6144 + 4710 5309 58902 134 0 7 176 2 1 259 2 0 22 chain 38113 chrX 155270560 + 88895966 88896498 MLT2A2 560 + 0 560 71965 169 3 11 10 9 17 193 14 25 60 5 6 69 chain 24432 chrX 155270560 + 88897754 88898047 L1PA7 6471 + 6168 6461 107904 293 chain 523576 chrX 155270560 + 88928819 88935318 L1PA7 6471 + 0 6466 4802 124 0 1 286 6 7 102 0 1 168 20 21 298 1 0 487 8 11 395 0 1 265 0 1 473 11 1 120 0 4 279 0 1 438 14 13 197 1 0 308 0 3 63 0 1 127 60 0 171 0 2 149 7 6 40 31 28 23 1 2 54 0 4 316 4 5 146 0 1 52 0 4 96 0 2 98 6 7 220 0 9 684 1 2 149 chain 27123 chrX 155270560 + 88951839 88952129 AluY 311 + 16 307 95852 116 0 1 174 chain 8364 chrX 155270560 + 88971313 88971618 L1PA8 5853 + 5158 5464 59977 52 1 2 252 chain 89036 chrX 155270560 + 88971624 88972685 MER11C 1089 + 0 1074 39986 313 0 4 176 0 3 194 0 4 39 15 16 314 1 2 9 chain 10667 chrX 155270560 + 88972699 88973088 L1PA8 5853 + 5464 5853 59977 93 6 5 47 2 0 66 5 4 9 4 0 9 1 4 38 5 4 17 2 1 19 0 7 66 chain 40414 chrX 155270560 + 88973708 88974198 L1PA7 6471 - 1 490 68716 154 2 1 334 chain 62559 chrX 155270560 + 88989202 88989976 LTR17 781 - 0 781 51649 453 0 1 12 8 5 182 9 18 110 chain 120275 chrX 155270560 + 89002230 89003873 L1PB1 5432 - 28 1689 30951 13 1 0 21 1 0 24 2 0 15 1 0 6 2 0 28 12 0 16 1 0 45 1 0 15 2 1 52 2 0 9 6 2 11 5 4 22 1 22 112 0 2 178 1 9 137 2 13 18 17 15 470 0 1 129 0 5 169 0 1 96 chain 6676 chrX 155270560 + 89043003 89043103 L1PA15 4387 - 73 170 179864 41 9 6 50 chain 118390 chrX 155270560 + 89047219 89048817 THE1D-int 1627 - 9 1614 31650 250 5 0 50 0 1 20 0 3 100 49 50 393 0 4 310 5 7 7 2 0 263 0 4 119 1 0 24 chain 35358 chrX 155270560 + 89065256 89065667 L1PA7 6471 - 1233 1643 75721 289 1 0 121 chain 5216 chrX 155270560 + 89065667 89065728 L1PA7 6471 + 5237 5298 189493 61 chain 25210 chrX 155270560 + 89065728 89066045 L1PA7 6471 + 5299 5621 103685 293 2 7 22 chain 25596 chrX 155270560 + 89066046 89066400 L1PA7 6471 + 5621 5938 101747 186 42 1 6 0 4 120 chain 42975 chrX 155270560 + 89066400 89066925 L1PA7 6471 + 5939 6461 65444 454 0 2 6 2 0 53 3 0 7 chain 6374 chrX 155270560 + 89124622 89124706 L1PB 1623 - 170 253 182211 7 1 0 76 chain 25663 chrX 155270560 + 89137300 89137571 AluYa5 310 + 27 298 101442 271 chain 20103 chrX 155270560 + 89176136 89176437 AluSc8 310 + 8 299 126819 45 17 11 44 9 10 14 0 3 103 2 0 3 6 0 58 chain 12013 chrX 155270560 + 89180901 89181131 L1PA8 5853 - 16 259 152140 9 0 1 67 1 0 19 2 1 15 31 47 16 8 0 9 0 8 36 2 0 15 chain 42121 chrX 155270560 + 89181200 89182098 LTR12C 1709 - 0 1709 66481 161 4 106 30 0 4 22 374 1079 307 chain 30213 chrX 155270560 + 89181417 89181791 LTR12C 1709 + 665 1361 83174 90 0 2 37 8 324 106 0 4 133 chain 508940 chrX 155270560 + 89186501 89193197 L1PA7 6471 - 5 6466 6249 849 0 3 602 3 4 438 4 6 356 0 2 142 331 18 390 11 7 111 5 4 5 0 1 840 6 5 42 2 0 135 5 0 514 0 1 12 0 1 417 0 1 290 0 19 374 1 66 64 21 26 144 3 0 108 1 0 12 0 1 37 22 7 125 85 93 189 chain 10874 chrX 155270560 + 89193877 89194184 MST-int 1221 - 90 397 156682 12 10 8 38 1 2 11 4 5 74 118 119 23 1 0 15 chain 132184 chrX 155270560 + 89219619 89221209 LTR12C 1709 - 0 1709 27594 398 1 0 83 0 4 107 3 1 5 1 0 257 0 118 473 3 4 259 chain 4697 chrX 155270560 + 89227705 89227774 MADE1 96 + 0 85 198562 33 2 18 34 chain 97156 chrX 155270560 + 89228117 89229207 L1PA5 6144 + 5044 6138 37523 253 0 4 837 chain 40919 chrX 155270560 + 89229588 89230096 MER9a3 513 - 0 493 68013 29 0 1 18 17 0 30 0 1 176 1 0 147 0 1 90 chain 18854 chrX 155270560 + 89284404 89284642 THE1C-int 1605 - 0 240 130505 36 0 2 202 chain 43982 chrX 155270560 + 89306871 89307368 L1PA4 6152 + 5659 6152 64223 487 4 0 6 chain 4941 chrX 155270560 + 89351446 89351504 THE1C-int 1605 + 1223 1281 195792 58 chain 34584 chrX 155270560 + 89364015 89364434 L1PA8 5853 - 1092 1519 76776 26 0 1 9 1 8 383 chain 83754 chrX 155270560 + 89364448 89365521 L1PA8 5853 + 4775 5851 42008 169 0 4 36 0 4 18 0 3 33 8 0 94 3 5 324 0 4 95 1 0 44 2 0 70 2 1 64 1 0 17 1 0 91 chain 34255 chrX 155270560 + 89388063 89388529 LTR19A 502 - 0 502 77271 70 2 1 131 5 4 59 0 37 85 6 7 108 chain 29551 chrX 155270560 + 89392521 89392894 MER51B 395 + 7 395 86412 221 9 24 143 chain 34723 chrX 155270560 + 89393164 89393637 LTR19A 502 - 0 502 76584 30 0 1 4 12 11 203 0 37 125 1 0 22 11 4 65 chain 10743 chrX 155270560 + 89408876 89409028 L1M1 2793 + 2515 2666 157226 110 9 8 33 chain 3457 chrX 155270560 + 89426623 89426729 L1MC3 1789 + 1334 1439 216035 9 0 4 26 50 45 21 chain 37901 chrX 155270560 + 89428451 89429099 L1PB1 5432 + 4719 5284 72286 360 0 4 15 105 29 11 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 16 2 0 47 chain 93308 chrX 155270560 + 89429609 89430915 MER57-int 2662 - 1341 2622 38562 212 1 2 9 6 2 65 6 5 32 1 4 177 2 0 291 0 1 210 2 0 142 6 1 60 1 0 11 42 27 30 chain 61013 chrX 155270560 + 89436893 89437673 MER4E 760 + 0 760 52325 24 7 0 54 7 0 92 16 9 190 4 6 71 1 0 314 chain 245366 chrX 155270560 + 89448086 89451071 L1PA7 6471 - 5 3005 16494 8 3 0 693 0 13 137 1 0 383 0 4 279 1 0 277 0 4 327 0 1 7 1 0 323 6 10 115 0 1 4 8 7 262 17 9 28 0 4 73 1 0 31 chain 184308 chrX 155270560 + 89451614 89454330 L1P2 5180 + 651 3069 20557 88 30 9 39 0 15 400 0 1 243 16 15 95 0 1 165 1 0 230 1 0 375 2 1 57 2 1 73 9 0 387 283 2 166 0 1 54 chain 5110 chrX 155270560 + 89467466 89467526 L1M3 994 + 218 278 193972 60 chain 75234 chrX 155270560 + 89468329 89469281 LTR5_Hs 974 + 0 974 45910 459 1 5 192 0 1 21 1 19 79 7 7 34 2 1 156 chain 28314 chrX 155270560 + 89470621 89471075 LTR46 455 - 0 455 91887 44 21 17 76 10 20 106 22 23 17 10 4 148 chain 14494 chrX 155270560 + 89471126 89471383 LTR46-int 301 - 39 293 142909 111 1 0 18 6 7 58 44 41 19 chain 25678 chrX 155270560 + 89478263 89478707 LTR46 455 - 0 455 101377 44 15 16 55 17 18 20 5 4 98 27 31 17 12 6 42 6 18 86 chain 11567 chrX 155270560 + 89489826 89489980 LTR19A 502 + 0 153 154041 34 5 4 115 chain 177730 chrX 155270560 + 89540406 89542840 MER4-int 2692 + 36 2510 21186 53 0 1 9 1 0 23 2 0 76 1 0 45 0 1 415 1 0 7 7 8 51 4 2 161 6 7 182 0 3 8 3 0 17 1 0 67 0 1 51 0 1 170 0 16 50 5 7 284 0 1 4 0 1 131 1 0 21 3 4 80 16 14 18 2 5 156 0 11 25 0 3 16 18 21 9 0 1 9 1 4 224 chain 29583 chrX 155270560 + 89570827 89571142 AluYb8 318 + 0 315 86258 315 chain 21582 chrX 155270560 + 89571142 89571513 MER4B 649 + 234 619 121839 76 16 15 18 1 16 173 13 14 18 1 0 8 20 21 4 1 0 22 chain 118645 chrX 155270560 + 89596642 89598314 L1PA10 4194 - 44 1706 31560 34 3 0 40 1 0 243 15 7 196 0 4 101 11 26 371 1 0 31 19 10 44 15 15 68 20 9 249 8 9 63 0 1 17 1 2 11 11 12 99 chain 4927 chrX 155270560 + 89619519 89619594 L1PA13 3608 - 388 471 195968 51 6 14 18 chain 63642 chrX 155270560 + 89624938 89625712 LTR17 781 - 0 781 51172 12 0 1 18 0 22 401 0 1 17 10 0 119 8 1 189 chain 5361 chrX 155270560 + 89630039 89630109 MADE1 96 - 1 91 191420 43 0 20 27 chain 37919 chrX 155270560 + 89638766 89639260 LTR12F 595 - 0 595 72253 271 1 0 40 0 2 43 5 93 34 1 13 99 chain 46127 chrX 155270560 + 89644342 89644952 LTR12F 595 - 0 595 61917 380 14 5 25 0 8 25 0 15 34 5 0 31 24 0 72 chain 23861 chrX 155270560 + 89672947 89673254 AluY 311 + 4 300 111121 122 5 0 140 7 0 15 0 1 18 chain 14454 chrX 155270560 + 89675066 89675247 MER4A1 472 - 14 195 143036 181 chain 514048 chrX 155270560 + 89677120 89683876 L1PA7 6471 + 0 6459 5771 278 1 0 134 35 33 824 27 28 56 5 3 17 2 0 5 0 3 19 3 0 157 1 0 76 0 2 40 0 1 72 5 6 280 0 1 19 7 9 174 0 1 358 6 7 967 2 0 257 29 26 357 0 2 456 0 4 248 0 1 424 0 8 19 4 5 52 0 1 191 1 0 167 318 0 451 7 15 205 chain 2774 chrX 155270560 + 89691889 89691918 MER50-int 1626 - 81 110 229132 29 chain 8447 chrX 155270560 + 89695172 89695273 MER30 238 - 5 106 168579 101 chain 9815 chrX 155270560 + 89701028 89701175 MER99 766 - 376 546 161521 18 11 21 62 0 13 56 chain 7026 chrX 155270560 + 89711229 89711312 LTR35A 463 - 7 90 177291 83 chain 33124 chrX 155270560 + 89722756 89723234 MER9a3 513 - 0 513 79020 78 0 1 14 0 1 33 12 14 66 0 10 12 0 18 8 1 0 68 17 18 61 0 1 90 0 2 18 chain 17802 chrX 155270560 + 89723256 89723554 THE1D 372 + 60 354 133399 14 16 17 59 5 0 34 27 29 11 1 0 32 1 0 98 chain 25403 chrX 155270560 + 89726626 89726928 AluYf4 310 - 11 310 102670 91 1 2 91 4 0 115 chain 128521 chrX 155270560 + 89751812 89753467 L1PA8 5853 - 0 1641 28445 93 1 0 17 1 0 55 13 11 69 2 0 46 1 0 156 3 1 24 2 0 119 5 6 115 1 0 54 2 0 78 3 1 116 0 1 679 chain 15522 chrX 155270560 + 89758039 89758276 LTR62 707 - 2 241 139820 53 14 15 90 9 10 71 chain 16124 chrX 155270560 + 89766842 89767065 L1PB1 5432 + 3117 3332 137983 21 8 0 194 chain 115837 chrX 155270560 + 89776152 89777516 LTR12C 1709 + 0 1709 32519 104 0 1 693 3 319 107 0 4 62 11 35 384 chain 179813 chrX 155270560 + 89782065 89784876 MER4-int 2692 + 1 2692 21009 10 1 0 25 2 0 21 1 0 4 0 1 37 4 1 18 1 0 11 9 4 355 0 1 43 7 16 65 4 5 41 1 0 51 0 1 13 10 11 11 32 47 47 0 1 4 1 0 14 0 1 59 2 1 147 5 57 194 221 27 108 1 0 14 4 3 171 1 0 4 0 1 107 0 1 24 1 0 188 1 2 36 0 1 8 0 1 36 0 4 212 16 17 268 1 0 50 11 12 33 0 1 45 chain 20081 chrX 155270560 + 89790371 89790746 L1PA15 4387 + 3634 3994 126886 47 10 7 125 2 0 16 37 30 32 3 1 38 38 37 27 chain 2932 chrX 155270560 + 89804042 89804079 MADE1 96 - 57 94 226486 37 chain 53722 chrX 155270560 + 89808060 89808801 LTR12 884 - 0 884 56523 156 0 103 237 24 0 11 2 0 34 2 3 183 2 27 11 0 41 54 1 0 24 chain 119710 chrX 155270560 + 89826567 89828179 L1PA10 4194 + 2526 4146 31143 80 32 34 36 4 8 15 0 1 139 0 4 890 0 2 92 2 1 254 47 43 21 chain 3495 chrX 155270560 + 89852285 89852325 U6 107 - 53 93 215429 40 chain 18871 chrX 155270560 + 89864363 89864571 L1PA4 6152 - 6 214 130452 208 chain 25026 chrX 155270560 + 89876792 89877079 AluSq10 312 - 16 303 104658 287 chain 158743 chrX 155270560 + 89886036 89888107 HERVL-int 5654 + 0 5578 23494 72 4 5 537 0 3495 97 0 6 342 5 7 255 0 1 583 0 3 12 6 5 158 chain 33609 chrX 155270560 + 89888144 89888986 MLT2A1 477 + 0 477 78228 168 8 5 219 374 14 18 6 0 43 0 4 6 chain 168860 chrX 155270560 + 89895315 89897198 L1PA3long 6157 - 0 1882 22179 11 1 4 842 1 0 281 4 1 743 chain 29884 chrX 155270560 + 89903731 89904115 L1PA7 6471 - 5 370 85148 130 19 0 14 14 14 207 chain 148794 chrX 155270560 + 89904130 89905965 L1P2 5180 + 1783 3620 24782 256 1 2 56 0 10 175 1 0 37 9 0 858 2 3 440 chain 28684 chrX 155270560 + 89945697 89946126 LTR7B 505 + 0 503 90391 105 0 10 69 6 68 26 0 2 42 29 30 10 1 0 26 0 1 52 14 13 49 chain 34757 chrX 155270560 + 89946988 89947491 LTR21A 479 + 0 479 76531 22 1 0 35 3 0 7 1 0 54 2 11 119 0 1 4 1 0 4 25 0 127 7 5 10 7 6 74 chain 395374 chrX 155270560 + 89949124 89954260 HERVL-int 5654 - 529 5654 10261 787 2 0 110 0 1 11 1 9 100 12 6 79 0 1 51 9 7 247 0 1 90 4 2 268 0 3 274 1 0 60 2 0 851 1 0 257 0 1 8 5 1 78 14 11 56 5 7 364 3 0 180 3 0 298 1 2 254 0 1 85 0 1 6 1 0 217 2 0 4 0 1 335 chain 31091 chrX 155270560 + 89961022 89961475 LTR7B 505 + 0 494 82361 108 0 10 57 0 38 12 34 27 26 0 2 85 1 0 76 14 13 40 chain 26185 chrX 155270560 + 89966467 89966744 AluYk12 309 + 31 308 99260 277 chain 105748 chrX 155270560 + 89968128 89969369 SVA_B 1603 + 42 1603 35319 149 5 4 469 8 48 42 0 281 568 chain 36979 chrX 155270560 + 89973493 89975105 L1PB2 3958 + 34 3836 73537 18 43 26 6 0 7 13 12 7 27 2 0 35 3 0 8 1 0 46 1 0 3 2 0 58 13 16 29 10 11 25 0 2 6 3 0 51 1 0 34 5 0 32 843 3065 58 1 0 64 6 5 67 2 0 19 10 9 55 chain 83268 chrX 155270560 + 89985928 89986906 L1PA6 6164 + 5166 6158 42222 146 1 0 117 0 1 259 0 3 176 0 2 83 0 9 196 chain 44216 chrX 155270560 + 90003462 90004081 L1PBa 3878 - 2257 2881 63926 163 0 1 4 1 0 28 0 1 155 6 7 45 36 39 181 chain 14003 chrX 155270560 + 90020877 90021370 LTR12D 1347 + 478 1082 144569 16 2 74 105 81 45 33 195 271 27 7 6 27 chain 25926 chrX 155270560 + 90021947 90022275 THE1C 375 - 12 357 100314 169 0 14 50 0 3 109 chain 271968 chrX 155270560 + 90022995 90026123 L1PA5 6144 + 2947 6144 15084 221 1 3 83 1 0 268 8 77 46 4 0 831 0 2 466 0 1 1036 1 6 5 5 0 152 chain 36744 chrX 155270560 + 90028313 90028761 LTR7 482 - 0 482 73885 98 0 2 104 1 32 39 0 1 206 chain 294671 chrX 155270560 + 90030021 90033703 HERVH-int 3825 - 0 3825 13718 225 3 8 254 8 218 39 9 11 1045 0 10 299 8 33 241 0 1 660 0 3 13 0 2 8 0 1 54 3 2 42 0 37 15 29 0 24 2 1 8 2 1 38 5 0 17 116 0 515 chain 39506 chrX 155270560 + 90033705 90034154 LTR7 482 - 0 480 70013 185 2 33 262 chain 34726 chrX 155270560 + 90034858 90035302 LTR2 463 + 0 463 76578 161 8 28 162 4 3 109 chain 28760 chrX 155270560 + 90051892 90052330 MER57-int 2662 + 40 458 90072 30 61 42 156 0 1 46 2 0 59 0 1 38 1 0 45 chain 46042 chrX 155270560 + 90075256 90075813 HERVL-int 5654 + 2400 2955 61999 403 1 0 36 1 0 116 chain 71718 chrX 155270560 + 90088881 90089841 L1PA8 5853 - 0 958 47599 56 1 0 37 1 0 16 16 15 50 1 0 12 0 1 58 5 3 43 1 0 340 0 1 43 1 2 164 1 3 114 chain 93747 chrX 155270560 + 90089841 90091055 L1PA8 5853 + 3684 4904 38422 186 0 2 233 0 1 102 3 2 158 6 9 113 0 1 413 chain 538647 chrX 155270560 + 90091229 90097360 L1PA4 6152 + 0 6140 3047 651 0 7 317 0 1 268 1 0 757 5 13 1670 4 0 2451 2 0 5 chain 77137 chrX 155270560 + 90109486 90110357 MER11D 897 + 0 897 44894 559 0 1 14 0 23 259 0 2 39 chain 86266 chrX 155270560 + 90124306 90127698 L1PA10 4194 + 3019 4136 41051 149 2279 7 336 1 0 570 0 1 22 15 12 20 chain 82198 chrX 155270560 + 90135914 90136965 MER11C 1089 + 0 1063 42677 176 0 2 72 0 1 35 0 1 26 0 4 215 33 35 24 6 4 95 0 4 5 1 0 38 0 1 6 0 1 175 1 0 143 chain 36494 chrX 155270560 + 90160655 90161089 L1PA7 6471 + 6034 6469 74247 61 0 1 171 0 2 182 0 1 7 3 0 10 chain 34755 chrX 155270560 + 90162164 90162634 MER4A1 472 - 0 472 76537 274 13 14 14 1 0 153 0 2 15 chain 53886 chrX 155270560 + 90169037 90169894 LTR12D 1347 - 0 938 56439 63 1 0 154 30 8 19 0 97 295 42 18 19 79 1 52 0 109 103 chain 3657 chrX 155270560 + 90169660 90169705 LTR12D 1347 - 864 909 186679 45 chain 7126 chrX 155270560 + 90170052 90170136 LTR12E 1234 + 372 456 176573 84 chain 47204 chrX 155270560 + 90177578 90178165 LTR10C 591 + 0 591 61040 510 0 1 4 14 15 33 2 1 5 0 3 19 chain 37339 chrX 155270560 + 90181179 90181694 MLT2A2 560 - 0 560 73038 8 0 4 87 26 30 18 0 11 48 0 24 25 1 3 302 chain 2857 chrX 155270560 + 90183835 90183869 MER21C 908 + 345 379 227715 34 chain 34340 chrX 155270560 + 90189144 90189588 LTR7 482 - 12 482 77142 192 1 32 21 0 1 109 20 14 101 chain 20427 chrX 155270560 + 90193596 90193865 THE1D-int 1627 - 1 270 125824 71 1 0 86 3 4 108 chain 61179 chrX 155270560 + 90195376 90196216 L1PA11 4918 + 2869 3711 52259 15 9 8 181 6 7 260 0 2 166 9 7 6 0 2 11 1 0 18 0 1 105 3 0 5 2 5 43 chain 9072 chrX 155270560 + 90203837 90203988 MSTA 426 + 264 424 165205 24 31 40 96 chain 1195 chrX 155270560 + 90205566 90205606 LTR17 781 - 0 40 59939 40 chain 76108 chrX 155270560 + 90205613 90206582 LTR5_Hs 974 + 0 974 45417 169 1 0 120 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 17653 chrX 155270560 + 90206606 90207197 LTR17 781 - 65 649 59939 389 0 1 28 12 4 162 chain 4486 chrX 155270560 + 90207197 90207409 MSTA-int 1630 + 1294 1508 140246 46 82 84 84 chain 26281 chrX 155270560 + 90207418 90207811 LTR7 482 - 5 482 98897 110 1 2 60 0 1 7 41 73 73 0 50 101 chain 2116 chrX 155270560 + 90207824 90207924 MSTA-int 1630 + 1517 1616 140246 95 1 0 4 chain 25753 chrX 155270560 + 90225664 90225960 AluSp 311 - 16 310 101070 110 2 0 184 chain 7378 chrX 155270560 + 90231012 90231101 L1PBa 3878 - 2776 2865 174912 89 chain 3238 chrX 155270560 + 90251071 90251154 LTR12C 1709 + 654 698 220282 26 39 0 18 chain 37465 chrX 155270560 + 90260362 90260831 MER4A1 472 - 0 472 72870 112 0 1 315 0 1 29 0 1 13 chain 29304 chrX 155270560 + 90260842 90261149 AluYb8 318 - 11 318 87551 307 chain 55151 chrX 155270560 + 90261158 90261900 MER4-int 2692 - 4 747 55614 152 0 2 33 6 9 157 0 1 4 1 0 58 1 0 3 3 0 266 2 0 44 0 2 12 chain 54906 chrX 155270560 + 90265410 90266154 MER4E 760 + 0 753 55767 23 0 1 127 16 20 26 0 3 78 18 19 74 4 0 208 7 11 163 chain 27018 chrX 155270560 + 90271649 90272014 MLT2A1 477 + 0 371 96223 142 0 1 25 1 5 22 21 22 154 chain 3312 chrX 155270560 + 90272173 90272214 MLT2A2 560 + 520 560 218748 20 1 0 20 chain 48473 chrX 155270560 + 90283193 90283831 LTR9B 643 - 0 643 60135 41 7 8 52 3 0 56 0 2 12 3 4 201 0 2 57 6 8 200 chain 508320 chrX 155270560 + 90288790 90295632 L1PA7 6471 - 7 6471 6295 601 0 1 231 16 7 276 348 0 357 7 6 41 0 5 163 0 1 56 1 3 713 0 1 189 1 0 288 0 2 26 1 0 90 0 1 115 5 6 535 8 1 74 25 3 40 4 1 211 0 17 37 0 1 445 14 3 305 0 4 180 47 48 5 1 0 115 17 6 907 7 6 325 2 3 13 chain 30788 chrX 155270560 + 90298888 90299288 MLT2A1 477 + 0 403 82884 169 1 5 24 0 1 111 0 1 60 6 3 29 chain 90869 chrX 155270560 + 90310944 90312162 L1PA8 5853 + 4639 5853 39331 363 8 10 494 10 11 47 10 9 36 2 0 61 18 23 7 7 0 40 2 1 19 2 1 92 chain 438522 chrX 155270560 + 90314208 90319708 HERVL-int 5654 + 115 5654 9095 500 0 2 65 23 15 4 1 0 4 0 1 55 0 24 75 7 11 58 3 4 17 2 1 26 2 1 63 0 2 29 15 17 203 18 8 6 1 0 839 2 0 608 0 18 303 1 0 31 1 4 334 0 5 1285 0 1 33 0 6 248 3 4 189 1 2 9 12 2 78 8 0 7 1 9 113 0 1 15 0 2 202 chain 27936 chrX 155270560 + 90319708 90320084 MLT2A1 477 + 0 385 93219 91 0 6 43 0 1 27 1 5 35 10 8 169 chain 8964 chrX 155270560 + 90344170 90344338 L1PA14 3548 - 92 260 165807 29 3 12 19 1 0 3 1 0 15 4 2 33 6 2 9 1 0 44 chain 14440 chrX 155270560 + 90354097 90354286 HSMAR1 1287 - 1076 1278 143080 48 0 11 27 0 2 114 chain 11456 chrX 155270560 + 90378191 90378407 MER50 708 + 469 690 154481 15 1 0 7 51 54 66 0 2 32 0 1 44 chain 28435 chrX 155270560 + 90382892 90383246 THE1A 353 - 0 353 91441 22 0 1 128 1 0 92 1 0 110 chain 122684 chrX 155270560 + 90383246 90384795 THE1A-int 1579 - 0 1552 30170 255 6 7 305 0 1 156 5 6 233 3 4 116 3 2 467 chain 33058 chrX 155270560 + 90387688 90388082 THE1B-int 1605 + 0 396 79123 109 0 2 285 chain 12238 chrX 155270560 + 90388809 90388969 THE1B 368 + 199 368 151264 93 2 1 24 0 10 41 chain 44552 chrX 155270560 + 90420421 90421016 LTR22 571 - 0 571 63522 318 5 4 165 25 1 21 0 1 61 chain 88628 chrX 155270560 + 90425264 90426295 LTR5A 1029 + 0 1029 40133 147 1 0 815 1 0 67 chain 152194 chrX 155270560 + 90446653 90449133 L1PA11 4918 + 2441 4567 24312 458 4 6 43 0 1 71 1 0 249 345 12 51 1 0 18 1 0 185 0 1 4 3 2 83 0 1 34 5 0 35 0 1 120 6 4 239 0 9 244 27 15 6 0 4 56 3 2 5 0 1 73 2 0 14 1 0 14 50 37 15 1 0 13 chain 5081 chrX 155270560 + 90454553 90454636 MLT1B 390 - 63 142 194284 54 16 12 13 chain 3695 chrX 155270560 + 90458569 90458611 L1PREC2 3366 + 1980 2022 212014 42 chain 29066 chrX 155270560 + 90470007 90470309 AluYa5 310 - 8 310 88690 302 chain 60486 chrX 155270560 + 90471370 90472123 L1PA7 6471 - 1 749 52586 12 1 0 144 1 2 145 14 13 152 4 0 280 chain 56560 chrX 155270560 + 90473955 90474666 L1PA7 6471 - 3 715 54818 47 2 1 153 1 3 508 chain 45910 chrX 155270560 + 90508517 90509357 L1PB1 5432 - 10 832 62122 15 5 4 12 1 0 6 0 5 10 1 0 24 2 0 14 11 8 12 23 12 4 1 0 15 1 0 36 11 10 14 2 1 52 2 0 9 18 13 13 2 0 19 1 0 8 6 3 102 1 0 4 1 2 101 3 2 64 0 3 6 7 12 41 6 4 105 0 11 25 3 0 21 chain 33278 chrX 155270560 + 90509365 90509767 L1PA7 6471 - 2 401 78759 10 2 0 142 11 10 237 chain 13433 chrX 155270560 + 90513489 90513640 L1P1 4361 - 2434 2585 146560 151 chain 45396 chrX 155270560 + 90520909 90521589 L1PA13 3608 - 123 801 62602 19 1 0 17 9 5 48 6 3 34 6 0 23 1 0 62 2 0 117 1 0 99 0 1 33 19 35 5 1 0 86 0 1 37 1 0 53 chain 3207 chrX 155270560 + 90533506 90533545 HUERS-P3b-int 2065 - 2006 2044 220829 34 1 0 4 chain 454086 chrX 155270560 + 90549494 90555266 L1PA7 6471 - 1 5715 8609 839 4 8 12 3 0 373 0 1 257 0 1 14 11 10 91 6 5 28 0 1 64 17 5 139 8 0 793 3 0 39 3 5 61 0 1 109 3 4 124 4 2 248 15 16 263 9 6 177 44 9 117 1 0 15 0 2 42 19 19 10 0 1 401 2 1 21 2 1 64 0 1 14 0 4 491 4 0 125 1 0 4 0 1 337 5 0 209 0 2 127 chain 43144 chrX 155270560 + 90569163 90569716 MLT2A2 560 - 0 557 65240 87 1 3 146 5 6 6 0 1 70 0 1 4 1 0 233 chain 3475 chrX 155270560 + 90575016 90575053 L1PA7 6471 - 3541 3578 215727 37 chain 96690 chrX 155270560 + 90575054 90576203 L1PA7 6471 - 3583 4734 37647 247 0 1 514 0 1 259 0 1 59 1 0 69 chain 279791 chrX 155270560 + 90576210 90579982 L1PA7 6471 + 2945 6465 14650 266 11 10 328 3 7 14 0 7 29 1 0 230 9 6 167 2 1 664 0 4 178 1 7 86 0 1 107 4 5 476 1 2 4 1 0 65 8 11 162 282 11 238 5 3 101 0 2 177 1 0 151 chain 22708 chrX 155270560 + 90579049 90579305 L1PA5 6144 + 5888 6144 117039 256 chain 281031 chrX 155270560 + 90587921 90591074 L1HS 6032 - 1370 4528 14582 287 1 5 1205 0 1 1660 chain 68874 chrX 155270560 + 90591074 90591838 L1PA3long 6157 + 5393 6157 48827 764 chain 40472 chrX 155270560 + 90603705 90604256 MLT2A2 560 + 0 560 68634 399 12 23 67 0 1 22 6 0 7 7 10 31 chain 158727 chrX 155270560 + 90613208 90614953 L1PA3long 6157 - 1192 2942 23499 504 0 3 840 0 2 401 chain 107877 chrX 155270560 + 90614953 90616134 L1PA3long 6157 + 4971 6152 34584 1181 chain 7204 chrX 155270560 + 90645546 90645640 Tigger2 2703 + 170 268 176045 70 0 4 24 chain 68019 chrX 155270560 + 90656445 90657354 L1PBa 3878 + 1868 2761 49241 18 0 2 102 5 4 18 16 6 352 1 2 328 8 0 61 chain 42468 chrX 155270560 + 90657486 90658222 L1PB1 5432 + 4650 5370 66051 204 1 0 120 15 24 105 7 11 24 1 0 9 1 0 11 5 1 9 2 0 39 0 1 12 19 17 37 92 73 23 chain 23473 chrX 155270560 + 90664682 90665029 L1PREC2 3366 + 219 563 113258 14 1 0 14 1 0 10 2 0 32 1 0 19 0 5 77 12 10 68 1 0 95 chain 6777 chrX 155270560 + 90681903 90681981 L1PB1 5432 - 968 1046 176574 78 chain 62154 chrX 155270560 + 90681981 90682975 L1PB1 5432 + 4487 5427 51829 118 0 4 22 8 0 15 16 17 433 30 13 5 1 0 24 1 0 9 1 0 9 2 0 3 2 0 8 5 3 50 3 2 13 2 1 45 2 1 14 2 0 6 59 44 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 11889 chrX 155270560 + 90713302 90713474 THE1C 375 + 195 369 152652 86 11 13 75 chain 13391 chrX 155270560 + 90713536 90713748 L1MA3 4352 + 4121 4324 146749 109 1 0 7 9 6 16 2 0 23 1 0 6 1 0 29 1 0 7 chain 17245 chrX 155270560 + 90718853 90719050 L1PA4 6152 + 5946 6143 134938 197 chain 184918 chrX 155270560 + 90724485 90726846 L1P3 4156 + 1 2355 20507 160 0 1 34 1 2 50 11 10 61 2 1 89 1 2 199 20 12 20 0 1 344 1 0 17 1 0 145 0 1 1205 chain 22692 chrX 155270560 + 90732327 90732810 L1PA15 4387 - 21 494 117117 9 1 0 28 7 3 11 3 1 44 13 10 23 45 40 12 2 1 54 1 0 13 14 13 64 12 22 12 1 0 72 11 10 31 chain 108798 chrX 155270560 + 90765209 90766425 L1PA4 6152 - 0 1218 34430 113 0 1 225 0 1 878 chain 313086 chrX 155270560 + 90766425 90769962 L1P1 4361 + 799 4341 12888 56 1 2 177 1 0 186 5 6 1269 0 4 698 1 0 96 0 1 388 0 1 468 1 0 129 0 2 23 1 0 23 2 1 12 chain 7577 chrX 155270560 + 90788765 90788855 L1M1 2793 - 1128 1218 173684 90 chain 12864 chrX 155270560 + 90807270 90807427 L1PA4 6152 + 5995 6152 148780 157 chain 3138 chrX 155270560 + 90819177 90819210 LTR12 884 + 345 378 222206 33 chain 219320 chrX 155270560 + 90827054 90829505 L1PA4 6152 + 3692 6141 17927 943 1 0 30 1 0 1476 chain 21727 chrX 155270560 + 90830066 90830338 L1PA7 6471 - 7 281 121293 14 0 1 128 13 14 117 chain 9310 chrX 155270560 + 90842620 90842753 L1PA15 4387 - 3956 4090 164013 60 6 7 67 chain 186728 chrX 155270560 + 90842929 90845558 L1PA10 4194 + 407 4161 20357 54 0 20 9 2 1137 130 4 2 6 0 4 44 0 4 8 34 21 764 1 15 7 1 0 16 13 9 66 2 1 227 0 5 7 27 3 162 20 9 14 2 0 698 0 5 252 20 17 27 1 0 11 chain 29571 chrX 155270560 + 90863309 90863783 L1PB2 3958 + 3361 3814 86323 16 2 0 62 2 0 13 20 16 77 3 4 6 2 0 62 1 0 64 2 1 53 8 1 18 2 0 21 1 0 39 chain 334795 chrX 155270560 + 90872887 90876941 L1PA4 6152 - 10 4068 12032 463 0 1 493 9 15 505 1 0 444 0 1 933 0 1 369 3 4 586 5 6 8 8 0 110 0 2 117 chain 555333 chrX 155270560 + 90882097 90888249 L1PA3long 6157 + 0 6157 787 1867 0 1 2489 0 4 1796 chain 15211 chrX 155270560 + 90890034 90890207 L1PA5 6144 + 5956 6129 140743 173 chain 28569 chrX 155270560 + 90904375 90904680 AluYb8 318 - 1 318 90872 63 0 12 242 chain 45807 chrX 155270560 + 90927355 90927928 L1PA5 6144 + 5593 6144 62222 297 1 2 121 0 1 65 25 1 64 chain 247736 chrX 155270560 + 90928957 90931751 L1PA4 6152 - 9 2904 16368 659 5 17 144 2 90 1183 0 1 801 chain 6426 chrX 155270560 + 90932447 90932532 THE1C-int 1605 - 404 508 181824 74 0 19 11 chain 15254 chrX 155270560 + 90933814 90933981 L1PA3long 6157 + 5989 6157 140620 18 0 1 149 chain 24630 chrX 155270560 + 90948626 90948889 L1HS 6032 + 5769 6032 106826 263 chain 21309 chrX 155270560 + 90957764 90958038 L1P3 4156 + 0 273 122830 251 2 1 21 chain 55208 chrX 155270560 + 90958038 90958759 L1PA8 5853 + 5135 5849 55578 429 1 0 35 11 9 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 101091 chrX 155270560 + 90982140 90983403 L1PA7 6471 - 4 2840 36487 10 9 0 143 1 30 660 0 4 21 4 1553 415 chain 115945 chrX 155270560 + 90992726 90994246 THE1A-int 1579 + 0 1572 32481 115 0 3 91 0 21 172 15 23 26 0 1 204 10 9 121 0 19 199 1 2 134 1 2 8 1 0 422 chain 26036 chrX 155270560 + 90994253 90994592 THE1A 353 + 0 341 99881 109 2 1 25 0 4 63 1 0 139 chain 13427 chrX 155270560 + 90997216 90997700 L1M1 2793 - 1676 2132 146591 114 114 110 31 39 36 17 13 14 17 105 83 34 chain 13476 chrX 155270560 + 91003911 91004067 L1PA4 6152 - 6 162 146429 156 chain 539458 chrX 155270560 + 91007800 91013824 L1PA3long 6157 + 0 6157 2904 153 0 1 614 8 136 115 0 4 5134 chain 5179 chrX 155270560 + 91044866 91044977 MER5A1 166 - 2 117 193244 24 17 20 28 13 14 29 chain 12853 chrX 155270560 + 91053095 91053265 U2 167 + 0 164 148825 130 2 0 11 5 1 22 chain 545063 chrX 155270560 + 91074673 91080699 L1PA3long 6157 - 0 6157 2066 4 0 1 2826 0 1 2416 0 128 628 0 1 152 chain 52250 chrX 155270560 + 91087064 91087650 L1PA5 6144 + 5556 6141 57465 476 1 0 109 chain 106271 chrX 155270560 + 91114939 91116348 L1PA10 4194 - 74 1470 35189 5 1 0 39 3 0 43 0 5 67 9 4 304 0 4 136 0 1 6 1 0 365 13 0 13 1 0 168 1 0 4 1 2 190 3 4 36 chain 10289 chrX 155270560 + 91131114 91131355 L1PB1 5432 + 5207 5424 159184 13 2 1 16 2 1 42 1 0 16 2 0 6 16 6 19 25 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 36683 chrX 155270560 + 91154025 91154529 MLT2A2 560 - 8 556 73981 135 6 17 54 6 38 125 1 0 42 0 2 135 chain 79061 chrX 155270560 + 91154533 91155588 HERVL-int 5654 - 0 1099 44026 41 14 4 6 4 0 13 5 25 132 4 0 213 1 2 495 8 7 67 1 42 10 0 1 41 chain 9129 chrX 155270560 + 91178100 91178212 HERVL-int 5654 + 5538 5653 164918 15 0 3 97 chain 41822 chrX 155270560 + 91178213 91178756 MLT2A2 560 + 0 560 66864 28 0 5 369 0 11 65 11 12 70 chain 11785 chrX 155270560 + 91178761 91178931 L1PA16 3655 + 3460 3619 153114 117 3 0 19 3 0 7 6 1 15 chain 153641 chrX 155270560 + 91210391 91212439 L1PA11 4918 - 2850 4909 24136 42 9 21 177 0 7 13 4 1 14 0 1 204 3 4 120 1 7 48 9 8 93 0 1 62 0 1 490 2 0 241 0 1 292 10 7 11 0 1 12 9 8 53 2 0 13 1 0 36 4 1 36 2 0 26 2 0 7 chain 26325 chrX 155270560 + 91216737 91217077 THE1C 375 - 29 375 98720 35 0 1 28 7 11 95 0 1 175 chain 18816 chrX 155270560 + 91221416 91221652 L1PA6 6164 + 5924 6160 130631 84 1 3 142 2 0 7 chain 18254 chrX 155270560 + 91221819 91222137 L1PA8 5853 - 0 304 132189 89 37 35 41 20 11 68 2 0 45 1 0 15 chain 4798 chrX 155270560 + 91225469 91225528 LTR12D 1347 - 654 713 197381 59 chain 75011 chrX 155270560 + 91227039 91227849 L1PA2 6032 - 594 1415 46010 767 0 11 43 chain 55236 chrX 155270560 + 91227849 91228449 L1PA2 6032 + 5431 6031 55564 600 chain 15635 chrX 155270560 + 91236583 91236775 THE1B 368 - 2 194 139478 192 chain 189906 chrX 155270560 + 91267911 91270045 L1PA4 6152 + 4020 6152 20063 256 1 0 1025 1 0 851 chain 28949 chrX 155270560 + 91291664 91292028 THE1B-int 1605 + 0 368 89229 74 0 4 290 chain 62763 chrX 155270560 + 91292054 91292997 L1PA8 5853 - 0 940 51555 88 6 5 18 1 0 40 0 7 7 19 10 70 2 0 36 10 9 168 0 1 44 6 19 114 12 14 108 2 1 87 6 0 8 21 16 70 chain 54403 chrX 155270560 + 91303737 91304476 MER4E 760 - 30 760 56094 286 1 0 81 0 2 162 0 1 22 22 25 33 28 17 84 4 1 16 chain 70328 chrX 155270560 + 91317531 91318347 L1PA7 6471 + 5646 6469 48253 440 0 4 208 1 2 156 0 2 11 chain 20878 chrX 155270560 + 91342390 91342659 LTR66 600 - 323 600 124370 16 0 3 78 1 0 137 1 7 36 chain 57394 chrX 155270560 + 91346430 91347184 MER4E 760 - 12 760 54290 304 1 0 73 0 2 30 9 1 111 7 4 57 7 0 8 7 17 56 0 1 84 chain 16108 chrX 155270560 + 91351524 91351875 THE1B 368 - 12 368 138033 27 26 23 28 3 4 23 61 66 7 0 2 53 14 15 76 1 0 32 chain 40184 chrX 155270560 + 91355238 91355689 LTR7 482 - 0 482 69057 191 0 31 260 chain 276932 chrX 155270560 + 91356937 91360433 HERVH-int 3825 - 0 3825 14822 225 6 8 143 39 39 72 10 220 37 9 11 813 2 1 148 0 2 81 0 10 299 8 35 769 9 9 84 0 6 32 0 3 13 0 2 7 0 1 26 11 72 26 24 0 12 1 0 15 29 0 24 1 0 10 1 0 25 0 56 412 0 4 73 chain 44624 chrX 155270560 + 91360435 91360916 LTR7 482 - 0 482 63451 430 0 1 51 chain 19554 chrX 155270560 + 91362661 91362889 MER4E 760 + 525 753 128507 228 chain 13556 chrX 155270560 + 91363905 91364101 LTR8 732 - 0 183 146149 59 1 0 91 17 5 28 chain 31948 chrX 155270560 + 91365386 91365875 PRIMA4_LTR 623 - 22 623 80947 49 1 3 89 1 71 11 8 16 40 1 8 46 6 9 47 21 43 169 chain 22945 chrX 155270560 + 91385363 91385668 AluSp 311 + 0 301 115883 30 3 0 108 27 26 137 chain 46340 chrX 155270560 + 91386427 91386985 PABL_A 660 - 0 593 61736 86 0 1 289 0 25 35 0 9 148 chain 47941 chrX 155270560 + 91388789 91389420 MER4A1_ 611 - 0 611 60531 98 0 1 382 0 1 6 23 1 122 chain 38941 chrX 155270560 + 91389526 91390041 MER41A 554 - 9 554 70815 138 0 29 88 11 12 278 chain 79477 chrX 155270560 + 91398291 91399297 THE1A-int 1579 + 568 1574 43837 296 19 16 520 0 4 65 1 0 105 chain 26233 chrX 155270560 + 91399302 91399632 THE1A 353 + 0 329 99083 110 1 0 219 chain 130437 chrX 155270560 + 91415277 91417186 L1PB1 5432 - 100 5133 27979 5 2 0 30 35 22 38 1 0 16 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 3 0 7 1 4 106 18 2 251 3 4 117 2 0 6 4 8 78 7 3172 372 2 3 582 1 0 98 3 0 5 chain 122902 chrX 155270560 + 91435931 91437509 THE1B-int 1605 + 0 1605 30079 127 0 1 5 2 1 298 9 34 215 0 1 485 1 2 436 chain 24711 chrX 155270560 + 91441357 91441646 AluSp 311 + 11 301 106377 99 0 1 190 chain 8219 chrX 155270560 + 91460138 91460241 LTR8 732 - 619 722 169833 103 chain 560256 chrX 155270560 + 91470068 91476208 L1PA3long 6157 + 6 6157 338 1161 0 3 1840 0 7 723 0 1 2416 chain 4120 chrX 155270560 + 91496924 91496982 L1MD2 1676 - 28 85 205647 43 1 0 14 chain 197810 chrX 155270560 + 91509244 91511468 L1HS 6032 - 3810 6032 19369 1504 0 7 346 0 1 92 9 0 15 1 0 257 chain 29177 chrX 155270560 + 91528081 91528515 LTR7Y 441 - 0 441 88159 197 68 84 57 9 0 103 chain 278255 chrX 155270560 + 91529764 91533359 HERVH-int 3825 - 0 3825 14738 225 3 8 254 152 365 902 0 1 45 0 10 214 15 11 72 6 33 410 0 17 479 1 0 49 68 5 28 2 1 40 32 63 4 1 0 9 1 0 10 1 0 38 5 0 199 1 0 256 0 4 73 chain 29614 chrX 155270560 + 91533359 91533793 LTR7Y 441 - 0 441 86163 197 68 84 57 9 0 103 chain 38780 chrX 155270560 + 91540714 91541192 MER9a3 513 - 0 513 71038 79 0 1 21 0 16 85 0 16 39 1 0 145 0 1 95 0 2 13 chain 19347 chrX 155270560 + 91542183 91542463 L1PA8 5853 - 0 275 129081 92 8 7 66 1 0 9 1 0 71 2 0 30 chain 47258 chrX 155270560 + 91553715 91554376 PABL_A 660 - 0 660 60998 68 1 0 4 0 1 77 6 8 219 4 5 10 1 0 155 44 39 5 0 2 67 chain 8928 chrX 155270560 + 91578574 91578671 L1PA3long 6157 - 0 97 165997 97 chain 23976 chrX 155270560 + 91630612 91630911 AluSg7 307 - 14 298 110476 8 16 0 158 0 1 117 chain 82506 chrX 155270560 + 91638327 91639301 L1PA7 6471 - 1 977 42536 20 0 1 749 0 2 77 1 0 127 chain 30706 chrX 155270560 + 91666272 91666730 L1PA8 5853 - 0 449 83026 88 6 5 19 2 1 34 15 13 14 2 1 70 2 0 20 0 6 20 1 0 22 5 0 25 2 0 111 chain 71886 chrX 155270560 + 91678148 91679110 L1PB1 5432 - 625 1579 47528 100 0 2 81 28 14 546 0 5 77 18 16 35 4 5 73 chain 8801 chrX 155270560 + 91689712 91689832 THE1B 368 - 0 119 166643 56 1 2 10 2 0 51 chain 25445 chrX 155270560 + 91731326 91731738 L1M1 2793 - 1612 2015 102479 133 1 0 45 1 0 95 18 15 34 40 37 20 1 0 24 chain 5629 chrX 155270560 + 91732793 91732857 L1PA13 3608 - 1540 1604 188778 64 chain 25081 chrX 155270560 + 91738919 91739846 L1PB1 5432 + 4937 5399 104398 163 449 14 20 1 0 8 3 2 12 11 7 5 2 0 34 20 19 16 1 0 44 1 0 15 1 0 4 2 0 13 9 0 13 14 11 9 2 0 24 1 0 22 1 0 7 chain 187728 chrX 155270560 + 91755606 91758235 L1PA11 4918 + 1902 4517 20268 291 17 15 256 0 2 70 17 14 167 1 0 186 0 8 214 1 3 531 4 1 140 0 6 210 0 5 83 4 5 17 7 8 46 0 5 21 27 4 47 14 15 38 0 4 17 27 20 42 2 1 13 2 0 66 2 0 15 1 0 20 4 0 9 chain 109772 chrX 155270560 + 91788709 91789944 L1P2 5180 + 798 2034 34263 648 1 0 284 0 1 119 0 1 183 chain 18667 chrX 155270560 + 91833147 91833363 L1PA7 6471 + 6248 6464 131034 216 chain 9746 chrX 155270560 + 91838399 91838512 THE1B-int 1605 + 1486 1600 161866 108 0 1 5 chain 63756 chrX 155270560 + 91908495 91909286 L1PA8 5853 - 0 786 51119 93 1 0 19 3 2 49 1 0 10 1 0 72 2 0 44 1 0 480 0 2 15 chain 34488 chrX 155270560 + 91909286 91918199 L1PA8 5853 + 4782 5853 76907 130 1 0 97 2 0 19 8217 366 93 5 3 74 1 0 113 3 2 10 1 0 10 0 2 6 1 0 25 21 37 84 chain 11940 chrX 155270560 + 91931174 91931399 L1MA1 4479 - 289 503 152442 18 9 0 11 2 4 6 1 0 9 1 0 35 2 0 29 1 0 31 5 6 65 chain 45909 chrX 155270560 + 91946024 91946711 THE1C-int 1605 + 15 759 62125 81 0 57 17 3 0 185 3 0 85 5 12 72 5 4 14 9 10 16 27 27 48 1 0 116 chain 5373 chrX 155270560 + 91954331 91954396 LTR12C 1709 - 872 937 191278 65 chain 473414 chrX 155270560 + 91970942 91976657 L1PA6 6164 + 356 6158 7934 55 5 6 24 23 0 19 7 6 14 7 45 262 0 17 194 6 0 454 1 0 83 0 1 294 1 0 495 23 0 25 1 3 328 0 1 88 0 1 141 0 70 233 0 1 7 2 1 479 1 0 201 0 2 1406 0 4 307 0 1 523 0 5 6 chain 3553 chrX 155270560 + 92009117 92009156 L1P4a 3072 - 1931 1970 214489 39 chain 40296 chrX 155270560 + 92079426 92079879 LTR7 482 + 0 482 68883 246 0 31 8 2 0 197 chain 252934 chrX 155270560 + 92079881 92083034 HERVH-int 3825 + 0 3120 16084 488 2 0 44 69 0 38 1 0 9 2 1 24 29 0 15 0 37 42 2 1 10 20 20 27 0 1 6 0 2 13 0 3 455 16 1 215 0 2 119 0 5 57 0 3 43 8 35 359 0 1 187 0 1 738 0 1 67 25 27 23 chain 40498 chrX 155270560 + 92083893 92084344 LTR7 482 + 0 482 68592 264 0 31 187 chain 25696 chrX 155270560 + 92085585 92085882 AluYf4 310 + 11 303 101301 202 2 0 33 3 0 57 chain 58200 chrX 155270560 + 92086058 92086810 MER4E1 777 + 0 767 53863 48 7 8 83 1 3 361 0 1 38 1 8 202 0 4 11 chain 65236 chrX 155270560 + 92106196 92107250 L1PB1 5432 - 19 1046 50449 9 1 0 13 1 0 21 1 0 9 39 34 16 9 0 14 21 18 42 19 17 50 3 1 10 17 12 9 1 0 24 1 0 5 7 6 107 2 5 67 0 1 51 0 1 219 0 4 22 3 0 5 5 4 131 1 0 4 0 1 95 chain 42901 chrX 155270560 + 92114921 92115454 L1PA7 6471 + 5935 6469 65538 219 5 6 309 chain 38953 chrX 155270560 + 92129617 92130141 MER9a3 513 - 0 513 70797 18 21 6 50 4 5 139 2 1 67 0 1 48 0 1 66 0 1 91 0 1 18 chain 4055 chrX 155270560 + 92140313 92140360 MADE1 96 + 48 95 206552 47 chain 27801 chrX 155270560 + 92140605 92140905 AluYg6 310 + 0 300 93689 300 chain 44041 chrX 155270560 + 92152830 92153388 L1P3 4156 + 3551 4108 64157 135 1 0 422 chain 117583 chrX 155270560 + 92154896 92156757 L1P2 5180 - 1761 3274 31931 88 0 1 96 11 19 32 1 0 19 2 0 276 0 3 563 43 3 98 317 0 315 chain 11665 chrX 155270560 + 92170612 92170757 L1P3 4156 + 3961 4107 153622 52 0 1 93 chain 2102 chrX 155270560 + 92170759 92170789 L1P3 4156 + 4107 4136 237615 9 1 0 20 chain 95426 chrX 155270560 + 92174187 92175268 L1PA5 6144 + 5063 6144 37980 170 0 1 171 1 0 739 chain 4457 chrX 155270560 + 92176581 92176628 L1PA5 6144 - 251 298 201268 47 chain 20097 chrX 155270560 + 92193006 92193319 THE1D 372 - 10 325 126839 137 1 0 25 32 34 87 11 12 20 chain 159072 chrX 155270560 + 92232904 92234826 L1PA7 6471 + 4521 6459 23453 25 6 19 41 0 2 222 1 0 769 0 4 18 2 0 838 chain 57620 chrX 155270560 + 92244469 92245250 LTR12 884 - 0 884 54175 61 4 13 223 10 0 211 2 0 199 5 112 41 1 0 24 chain 3937 chrX 155270560 + 92253286 92253332 MADE1 96 - 50 96 208306 46 chain 38097 chrX 155270560 + 92263142 92263609 LTR2 463 - 0 463 71990 94 0 1 142 5 0 226 chain 288694 chrX 155270560 + 92278369 92281964 HERVH-int 3825 + 0 3825 14107 333 1 0 197 1 0 10 1 0 5 0 1 24 1 0 10 1 0 10 4 0 7 6 0 6 3 1 14 1 0 13 3 0 13 0 39 15 2 1 16 21 0 8 0 1 5 2 1 49 1 0 450 16 1 455 4 31 290 0 4 287 0 1 475 0 2 76 1 0 5 1 2 212 9 11 12 1 2 25 8 218 260 0 2 225 chain 349054 chrX 155270560 + 92284341 92288239 L1PA3long 6157 - 0 3885 11635 149 0 1 28 0 2 388 18 2 191 1 0 1700 1 2 1422 chain 109742 chrX 155270560 + 92288239 92289595 L1P1 4361 + 667 2029 34201 35 12 5 93 3 0 6 23 26 203 0 13 981 chain 13459 chrX 155270560 + 92300459 92300603 L1PA3long 6157 - 0 144 146492 144 chain 49383 chrX 155270560 + 92306020 92306609 LTR10C 591 - 0 591 59459 79 1 3 207 0 1 14 1 0 287 chain 542679 chrX 155270560 + 92315247 92321330 L1PA4 6152 + 64 6151 2396 242 1 2 251 0 1 934 8 9 875 0 1 2651 1 0 949 0 1 171 chain 54892 chrX 155270560 + 92327933 92328538 L1PA4 6152 - 9 614 55775 605 chain 3861 chrX 155270560 + 92338663 92338727 L1PB3 3668 - 102 164 209439 31 12 10 21 chain 20034 chrX 155270560 + 92353786 92354042 MSTA-int 1630 + 1361 1616 127034 195 1 0 60 chain 24140 chrX 155270560 + 92377880 92378241 MLT2A1 477 + 0 374 109523 17 0 4 96 28 34 17 2 6 119 0 1 5 9 7 68 chain 308885 chrX 155270560 + 92387743 92391626 L1PA8A 6298 + 2381 6292 13049 127 1 3 49 17 26 122 11 12 44 0 3 185 0 1 12 0 4 164 0 1 4 1 0 739 3 4 759 0 1 704 0 1 43 0 1 42 1 2 57 1 0 77 1 3 435 0 1 168 7 0 8 2 10 99 chain 43455 chrX 155270560 + 92404100 92404758 LTR12_ 688 + 0 688 64863 80 0 90 35 0 66 85 126 0 332 chain 26117 chrX 155270560 + 92405838 92406182 THE1A 353 - 11 353 99540 128 3 0 6 4 6 92 2 1 109 chain 120901 chrX 155270560 + 92406187 92407722 THE1A-int 1579 - 5 1579 30728 367 0 12 91 0 20 171 0 6 66 1 2 268 0 1 6 1 0 564 chain 26165 chrX 155270560 + 92407727 92408082 THE1A 353 - 4 351 99347 32 10 5 114 2 0 88 1 0 108 chain 67196 chrX 155270560 + 92423270 92424321 MER11C 1089 + 0 1059 49564 254 5 8 95 3 6 14 9 10 39 17 16 92 64 65 145 10 0 10 20 28 43 10 11 42 0 1 15 4 5 160 chain 22096 chrX 155270560 + 92443374 92443621 L1PA7 6471 - 164 411 119806 247 chain 69101 chrX 155270560 + 92446103 92446885 L1PA4 6152 - 10 792 48722 782 chain 83162 chrX 155270560 + 92446885 92447809 L1PA4 6152 + 4355 5279 42268 924 chain 6917 chrX 155270560 + 92491289 92491374 LTR12C 1709 + 854 939 178067 85 chain 168569 chrX 155270560 + 92491877 92494178 HERVE_a-int 7009 + 4773 7008 22214 540 9 0 114 1 0 25 1 0 10 2 1 73 1 0 6 3 0 38 2 0 18 10 9 87 2 1 10 1 0 254 2 1 4 1 0 102 1 0 15 1 0 3 1 0 56 3 1 20 1 0 12 1 0 80 2 0 138 1 0 43 1 0 30 2 1 10 1 0 16 1 0 5 2 0 7 1 0 37 1 0 7 0 1 12 1 0 48 1 0 4 2 1 26 7 5 54 1 0 33 7 4 54 3 1 27 1 0 15 1 6 9 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 32 24 25 2 0 6 2 1 10 chain 36489 chrX 155270560 + 92494184 92494645 LTR2 463 + 0 463 74251 88 0 2 121 1 6 14 5 0 232 chain 37103 chrX 155270560 + 92501354 92501771 L1PA3long 6157 - 0 419 73378 148 0 1 182 0 1 87 chain 10410 chrX 155270560 + 92517861 92518083 MER30 238 + 0 238 158643 22 53 52 39 4 20 6 2 0 51 0 3 45 chain 48907 chrX 155270560 + 92528182 92528767 LTR14C 587 - 0 587 59804 151 4 5 287 3 4 140 chain 38014 chrX 155270560 + 92545032 92545585 HSMAR1 1287 - 738 1279 72111 222 14 14 93 12 0 50 0 6 21 0 2 14 28 20 99 chain 119337 chrX 155270560 + 92565511 92566792 L1HS 6032 + 4751 6031 31286 1267 1 0 13 chain 233203 chrX 155270560 + 92569561 92572330 L1PA7 6471 - 4 2775 17131 262 0 1 587 0 3 281 1 0 100 0 3 53 0 1 36 1 0 1026 13 9 409 chain 41931 chrX 155270560 + 92573580 92574123 L1P1 4361 - 975 1509 66716 177 2 1 21 8 0 335 chain 4104 chrX 155270560 + 92599781 92599832 L1MA2 4263 - 3158 3209 205878 51 chain 61187 chrX 155270560 + 92611226 92612326 L1PB1 5432 - 19 925 52256 9 1 0 13 1 0 21 1 0 26 22 17 18 50 18 10 1 0 44 9 8 10 0 6 46 2 0 9 17 11 9 2 0 24 1 0 11 131 0 130 15 0 101 0 1 67 1 0 178 2 0 59 1 2 58 chain 105158 chrX 155270560 + 92647367 92649017 L1PA8 5853 + 4521 5853 35463 489 2 0 179 309 0 373 1 0 47 2 0 70 1 0 14 6 5 42 2 1 19 6 5 88 chain 15316 chrX 155270560 + 92681349 92681558 L1PA7 6471 + 6257 6470 140435 5 0 1 39 1 0 144 8 12 12 chain 43949 chrX 155270560 + 92684666 92685163 LTR2C 499 + 0 499 64265 172 0 3 263 1 0 61 chain 348540 chrX 155270560 + 92686266 92690343 HERVE-int 4064 + 0 4064 11650 494 0 15 303 0 1 147 0 1 4 1 0 568 26 1 839 0 2 1031 2 0 352 4 0 306 chain 42932 chrX 155270560 + 92693000 92693490 LTR2C 499 + 3 499 65500 117 0 4 61 0 3 247 1 0 64 chain 33782 chrX 155270560 + 92710607 92711123 LTR3B_ 500 + 8 499 77967 294 5 1 22 1 2 21 0 1 8 0 1 14 25 35 67 6 0 9 29 1 15 chain 201723 chrX 155270560 + 92712878 92715698 MER61-int 3695 - 7 2832 19086 77 1 0 4 1 2 251 0 3 94 0 1 4 1 0 99 5 3 4 0 1 24 0 15 100 78 79 40 24 20 17 0 1 17 0 1 62 2 1 5 0 1 88 1 0 6 1 2 44 15 8 193 1 2 178 9 8 285 0 2 269 1 0 4 1 0 6 10 0 117 0 1 460 0 6 28 2 1 191 chain 9450 chrX 155270560 + 92716847 92717326 MER61A 341 - 0 160 163312 83 329 17 26 9 0 17 0 2 15 chain 19950 chrX 155270560 + 92730388 92730613 L1PA8A 6298 - 1931 2156 127012 225 chain 156781 chrX 155270560 + 92730613 92732575 L1PA8A 6298 + 4333 6285 23763 168 7 0 667 1 0 47 0 1 272 11 8 77 0 1 94 1 0 513 4 0 6 5 9 89 chain 23395 chrX 155270560 + 92743297 92743628 L1PA8 5853 - 9 335 113675 84 1 0 19 2 1 52 2 1 8 2 1 33 3 5 32 2 0 44 1 0 46 chain 36318 chrX 155270560 + 92745049 92745511 LTR2 463 + 0 463 74480 217 5 0 6 1 6 133 12 13 88 chain 219724 chrX 155270560 + 92749150 92753847 L1PA10 4194 + 175 4146 17899 12 2 0 13 3 0 7 19 13 12 2 0 9 1 0 9 1 0 8 0 1 4 10 8 15 1 0 8 37 12 7 1 0 24 2 0 16 1 0 8 4 3 8 1 0 10 0 1 12 20 12 77 1 0 4 6 5 148 10 5 232 8 8 7 0 4 10 10 6 844 4 5 65 331 3 211 0 2 92 5 8 125 1209 873 394 7 9 532 5 0 30 13 10 30 chain 27464 chrX 155270560 + 92766468 92766889 L1PA15 4387 - 71 477 94768 34 21 15 50 1 0 9 4 0 23 1 0 55 1 0 25 2 1 172 1 0 22 chain 2998 chrX 155270560 + 92787936 92788119 LTR12 884 + 313 398 225056 24 18 31 10 111 0 20 chain 58877 chrX 155270560 + 92801177 92802939 L1PA15 4387 + 3278 4348 53472 32 25 2 175 650 0 78 16 14 148 6 10 51 48 46 11 2 4 41 58 55 159 1 0 20 20 19 41 5 4 17 4 0 12 1 0 39 19 16 44 23 16 16 chain 48290 chrX 155270560 + 92807695 92808361 MER4E1 777 - 0 777 60251 76 16 122 21 18 15 200 2 1 130 0 8 183 1 2 19 chain 91805 chrX 155270560 + 92823134 92824922 L1PB1 5432 - 157 1504 39025 38 19 17 52 532 68 48 1 0 5 0 1 50 7 27 335 4 0 10 5 7 277 0 6 172 0 1 233 chain 32906 chrX 155270560 + 92840294 92840838 MLT2A1 477 - 0 477 79360 19 1 0 20 56 0 7 6 0 5 1 0 9 1 0 4 1 0 7 12 1 6 1 0 6 1 0 119 0 7 96 0 4 16 8 9 142 chain 13740 chrX 155270560 + 92852014 92852175 AluSp 311 - 17 178 145468 161 chain 182124 chrX 155270560 + 92872139 92874136 L1PA4 6152 - 5 2002 20769 1997 chain 555997 chrX 155270560 + 92882329 92888480 L1PA3long 6157 + 4 6157 726 738 1 0 2876 0 2 10 1 2 2525 chain 12219 chrX 155270560 + 92891845 92891991 MSTA-int 1630 + 26 172 151348 146 chain 82174 chrX 155270560 + 92900854 92902034 L1PA10 4194 - 33 1209 42692 11 1 0 33 3 0 33 1 2 151 0 1 4 1 0 74 0 3 53 12 13 170 8 9 158 3 0 5 17 20 290 8 1 98 12 13 34 chain 503474 chrX 155270560 + 92915442 92921610 L1PA7 6471 + 6 6469 6639 210 1 25 157 0 3 2 0 1 508 0 3 6 3 0 78 3 4 385 11 34 387 0 1 455 0 241 126 18 0 464 1 12 486 11 12 13 1 0 126 0 1 137 2 1 393 7 9 201 0 1 71 18 19 613 1 0 150 0 1 283 0 5 80 4 3 756 chain 6807 chrX 155270560 + 92942047 92942142 L1PB2 3958 + 3747 3838 178900 6 2 0 8 1 0 14 1 0 63 chain 38088 chrX 155270560 + 92973463 92973886 L1PA3long 6157 + 5735 6156 72006 234 2 0 187 chain 39368 chrX 155270560 + 93016950 93017532 PRIMA4_LTR 623 + 1 623 70222 67 0 14 7 1 2 24 0 10 53 0 23 53 9 0 7 7 0 9 0 1 46 1 0 35 1 2 20 10 12 51 0 1 7 2 4 96 5 7 71 chain 43612 chrX 155270560 + 93025635 93026202 LTR10C 591 - 0 591 64670 81 0 2 84 9 26 33 4 10 154 3 0 153 0 4 13 2 0 31 chain 29338 chrX 155270560 + 93078447 93078756 AluYa5 310 - 0 309 87359 309 chain 3525 chrX 155270560 + 93091394 93091489 MLT2B3 573 - 52 143 214975 21 32 33 11 5 0 26 chain 36631 chrX 155270560 + 93094178 93094686 MLT2A2 560 + 1 512 74055 165 8 9 5 1 0 209 1 0 4 0 1 9 7 10 99 chain 352039 chrX 155270560 + 93138184 93142154 L1PA4 6152 - 0 4004 11547 1084 0 1 148 30 4 494 0 49 82 0 9 771 0 1 1361 chain 83800 chrX 155270560 + 93183771 93184819 MER11A 1151 - 0 1151 41989 91 0 2 112 1 0 30 0 1 53 9 6 46 6 5 474 0 2 27 1 0 6 0 2 63 0 4 72 0 98 57 chain 549973 chrX 155270560 + 93194744 93200899 L1PA2 6032 + 4 6029 1452 253 1 0 520 129 1 4238 1 0 1013 chain 10168 chrX 155270560 + 93201334 93201446 L1PA3long 6157 + 6045 6157 159766 112 chain 34127 chrX 155270560 + 93208906 93209397 THE1B-int 1605 + 1 479 77442 115 0 4 302 50 33 24 chain 432539 chrX 155270560 + 93212816 93218455 HERVL-int 5654 + 0 5654 9249 56 3 2 175 0 1 176 22 26 204 12 9 243 0 2 230 8 6 1116 0 1 22 0 1 180 0 1 502 0 1 132 0 1 964 41 43 146 1 0 31 1 2 72 0 9 24 1 2 83 0 2 409 0 2 70 0 2 164 0 1 302 10 0 16 1 0 4 0 1 218 chain 28923 chrX 155270560 + 93220799 93221143 LTR14A 344 + 0 344 89363 344 chain 10260 chrX 155270560 + 93226972 93227106 L1PA10 4194 - 69 201 159323 9 3 0 96 0 1 26 chain 62910 chrX 155270560 + 93236115 93236878 LTR17 781 - 8 781 51485 374 8 7 64 0 1 69 3 4 126 0 9 119 chain 21984 chrX 155270560 + 93263899 93264175 AluSp 311 + 11 285 120296 239 3 1 34 chain 9411 chrX 155270560 + 93264210 93264340 PABL_B 668 - 436 575 163503 46 6 15 78 chain 47219 chrX 155270560 + 93271950 93272579 PABL_B 668 - 42 668 61030 280 1 0 49 1 0 4 0 1 8 2 0 3 1 0 37 10 10 176 0 1 57 chain 5944 chrX 155270560 + 93279577 93279682 MER44D 709 - 151 258 185747 48 13 17 12 3 1 29 chain 23623 chrX 155270560 + 93293246 93293514 AluY 311 + 37 305 112447 268 chain 32311 chrX 155270560 + 93299212 93299724 MER4-int 2692 - 0 2691 80352 4 1 0 70 0 1 27 0 2186 276 5 0 41 15 16 35 11 9 16 1 0 10 chain 16100 chrX 155270560 + 93301090 93301823 LTR12D 1347 + 587 1191 138063 106 112 18 41 300 296 34 1 0 24 2 5 10 40 7 22 24 24 17 chain 3446 chrX 155270560 + 93301196 93301307 LTR12D 1347 + 574 652 212527 10 28 24 15 29 0 29 chain 22960 chrX 155270560 + 93306011 93306290 AluY 311 + 15 288 115801 111 6 0 162 chain 5443 chrX 155270560 + 93317305 93317376 L1MA9 1812 + 1337 1409 190578 49 0 1 22 chain 26336 chrX 155270560 + 93320170 93320576 THE1D 372 + 0 372 98670 54 54 24 113 4 0 181 chain 11963 chrX 155270560 + 93335995 93336219 MER1A 529 - 7 223 152353 25 43 45 90 10 0 56 chain 45951 chrX 155270560 + 93336233 93336845 L1PB1 5432 - 864 1478 62021 53 0 7 495 2 1 13 13 9 36 chain 49254 chrX 155270560 + 93336845 93337734 L1PB1 5432 + 4562 5422 59548 63 4 1 115 0 1 237 1 2 74 5 6 4 1 0 33 7 12 7 7 0 21 35 32 38 12 11 12 8 7 39 44 31 16 27 22 24 1 0 21 1 0 13 1 0 18 chain 117612 chrX 155270560 + 93340523 93341848 L1PA5 6144 - 3 1334 31922 144 0 1 184 1 2 513 1 5 482 chain 18541 chrX 155270560 + 93359573 93359802 THE1C-int 1605 - 11 240 131390 229 chain 52233 chrX 155270560 + 93361409 93362072 L1PA8 5853 + 5188 5847 57475 90 0 4 239 1 0 43 1 0 45 2 0 72 1 0 7 1 0 52 2 1 19 7 6 81 chain 78920 chrX 155270560 + 93373428 93374401 HERVL-int 5654 + 4237 5224 44094 223 0 12 81 3 0 101 0 1 98 0 1 4 1 0 143 1 4 78 0 1 240 chain 5248 chrX 155270560 + 93377848 93378087 L1M1 2793 - 1901 2121 192536 27 0 4 8 25 22 20 55 50 17 57 42 30 chain 16168 chrX 155270560 + 93398212 93398479 MST-int 1221 - 846 1107 137850 55 2 1 13 1 0 35 5 7 87 10 7 15 2 0 32 1 0 9 chain 272100 chrX 155270560 + 93403967 93407302 L1PA6 6164 + 2985 6162 15070 204 0 1 560 9 1 717 8 0 1076 2 0 136 172 31 451 chain 4059 chrX 155270560 + 93423799 93423845 MSTA 426 + 370 416 206491 46 chain 19691 chrX 155270560 + 93441551 93441829 L1PA10 4194 - 33 308 128130 11 2 1 31 10 6 36 3 4 16 0 1 169 chain 115992 chrX 155270560 + 93450962 93452544 THE1B-int 1605 + 0 1600 32461 12 5 6 157 0 1 4 5 37 213 38 21 108 0 1 187 10 1 7 0 9 406 7 6 225 4 5 194 chain 21172 chrX 155270560 + 93461859 93462217 THE1B 368 + 1 367 123298 12 2 0 31 33 39 86 1 0 21 17 24 16 1 0 10 1 0 127 chain 6177 chrX 155270560 + 93468089 93468166 MADE1 96 - 0 96 183764 43 0 19 34 chain 24596 chrX 155270560 + 93468477 93468767 AluSp 311 - 10 300 107016 290 chain 23165 chrX 155270560 + 93476717 93477096 LTR7 482 + 0 473 114835 101 15 14 17 36 129 46 0 1 111 13 14 40 chain 13033 chrX 155270560 + 93534479 93534816 L1PB1 5432 - 9 318 148112 7 1 0 12 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 56 45 45 19 17 46 8 6 8 4 0 14 5 4 4 1 0 24 chain 28141 chrX 155270560 + 93545430 93545874 LTR7B 505 + 7 505 92497 31 0 2 68 0 10 30 31 104 28 29 0 82 1 0 79 14 13 51 chain 142781 chrX 155270560 + 93562230 93563850 L1PA4 6152 + 4537 6152 25688 98 1 0 179 5 0 1329 0 1 8 chain 29078 chrX 155270560 + 93564979 93565294 AluYb8 318 - 7 318 88650 179 4 0 132 chain 22234 chrX 155270560 + 93585386 93586549 Tigger3b 1229 + 63 550 119194 41 794 120 67 1 0 43 1 0 82 14 11 5 0 3 47 18 20 41 2 0 7 chain 5384 chrX 155270560 + 93585784 93585961 Tigger3b 1229 - 1058 1166 191155 40 96 27 41 chain 8957 chrX 155270560 + 93586662 93586771 MER85 139 + 7 126 165844 83 0 10 26 chain 4045 chrX 155270560 + 93595285 93595333 MADE1 96 + 42 90 206722 48 chain 36324 chrX 155270560 + 93596572 93597146 MER51A 677 + 0 659 74470 131 1 10 29 13 76 269 3 24 19 33 25 30 17 21 6 4 0 19 chain 27607 chrX 155270560 + 93612412 93612718 L1PA4 6152 + 5829 6136 94329 76 0 1 230 chain 56790 chrX 155270560 + 93619307 93620069 MER4E1 777 + 17 777 54660 222 2 0 5 17 5 58 0 1 192 0 1 31 5 13 223 0 2 7 chain 6549 chrX 155270560 + 93627442 93627523 L1MA1 4479 + 1263 1344 180854 81 chain 3027 chrX 155270560 + 93643927 93643988 MER50C 576 + 491 558 224439 13 16 22 32 chain 63679 chrX 155270560 + 93644710 93645504 LTR12 884 - 0 884 51152 175 1 0 31 1 5 273 0 22 38 0 65 275 chain 56530 chrX 155270560 + 93665861 93666605 MER4E 760 + 0 759 54836 14 4 5 255 0 7 62 0 3 184 8 7 19 5 6 29 5 9 159 chain 61812 chrX 155270560 + 93694009 93694680 L1PA3long 6157 - 13 684 51991 671 chain 7938 chrX 155270560 + 93704668 93704860 L1PB1 5432 + 5251 5423 171397 28 1 0 17 1 0 6 16 6 15 17 14 9 2 0 24 1 0 21 12 10 22 chain 10558 chrX 155270560 + 93704927 93705081 L1MA3 4352 + 3711 3875 158011 28 19 25 21 0 4 86 chain 73136 chrX 155270560 + 93720188 93721290 L1PA14 3548 + 2365 3453 46954 9 0 11 83 0 2 65 2 1 152 2 1 10 0 1 4 11 10 226 2 0 54 6 4 7 2 0 109 9 5 12 2 0 6 1 0 84 1 0 110 1 0 10 6 2 19 2 1 16 23 19 17 1 0 38 chain 276058 chrX 155270560 + 93736225 93739944 L1PA8A 6298 - 652 4328 14869 70 3 0 82 8 7 101 0 2 334 20 21 142 18 14 125 0 1 60 8 12 85 0 3 553 2 1 4 0 1 154 27 0 75 1 0 32 9 1 61 37 0 229 1 0 4 4 11 54 8 4 61 0 1 609 4 8 48 7 24 27 0 1 68 1 5 50 0 2 412 8 3 55 0 1 58 chain 8995 chrX 155270560 + 93745174 93745280 MER4A1 472 + 0 106 165632 106 chain 11860 chrX 155270560 + 93745462 93745643 L1PA5 6144 - 2 180 152789 11 3 0 125 25 25 17 chain 43127 chrX 155270560 + 93746115 93746646 L1P1 4361 - 20 548 65258 12 2 1 23 1 0 157 1 0 335 chain 245789 chrX 155270560 + 93748118 93752968 HERVK22-int 3844 + 313 3844 16467 1772 0 3 764 0 4 103 0 1 53 0 2 33 2 1 9 642 23 37 2 1 5 1 0 18 1 0 34 2 1 21 2 0 39 15 10 45 2 0 14 21 11 4 1 0 12 2 0 5 2 0 5 2 0 3 2 0 9 1 0 8 66 48 19 11 7 29 849 196 88 1 0 94 chain 9872 chrX 155270560 + 93754506 93754620 MLT2A1 477 - 363 477 161226 114 chain 75354 chrX 155270560 + 93757111 93758161 L1PA8 5853 - 0 1046 45841 92 2 1 19 2 1 35 6 5 11 2 1 9 2 1 70 2 0 44 1 0 27 24 21 45 0 1 383 0 1 42 0 4 31 5 4 17 0 4 144 2 0 33 chain 5237 chrX 155270560 + 93777875 93777940 MLT2A1 477 - 0 69 192656 36 0 4 29 chain 91859 chrX 155270560 + 93790826 93792020 L1PA8A 6298 + 4833 6284 39007 201 16 271 76 6 7 100 0 2 81 3 2 235 0 1 192 1 0 283 chain 59784 chrX 155270560 + 93809668 93810454 HERVL-int 5654 + 0 781 52938 294 5 1 6 0 4 40 6 1 435 chain 21505 chrX 155270560 + 93820070 93820318 L1PA7 6471 - 39 287 122126 248 chain 54784 chrX 155270560 + 93820327 93821054 L1PA7 6471 + 5486 6160 55852 134 2 1 124 0 1 105 55 0 159 0 2 148 chain 27799 chrX 155270560 + 93824237 93824556 LTR17 781 - 456 774 93698 242 1 0 76 chain 21250 chrX 155270560 + 93833738 93833969 L1PA4 6152 + 5921 6152 123022 231 chain 21914 chrX 155270560 + 93835075 93835338 AluY 311 + 38 304 120567 94 0 1 86 1 3 82 chain 44017 chrX 155270560 + 93842298 93842852 MER41A 554 - 0 554 64183 554 chain 22425 chrX 155270560 + 93874980 93875642 THE1A 353 - 0 353 118356 172 310 2 62 39 38 79 chain 122546 chrX 155270560 + 93875653 93877216 THE1A-int 1579 - 12 1579 30209 940 1 0 124 2 1 51 0 1 10 0 2 108 0 1 302 10 12 15 chain 46075 chrX 155270560 + 93892511 93893070 L1P3 4156 + 3583 4139 61969 524 2 0 7 2 1 24 chain 16266 chrX 155270560 + 93918586 93918952 L1PB1 5432 - 19 326 137558 9 1 0 12 1 0 22 1 0 24 44 19 20 29 12 15 1 0 43 1 0 15 3 2 53 2 0 8 5 1 14 1 0 5 2 1 24 3 0 8 chain 8605 chrX 155270560 + 93923146 93923763 L1MC3 1789 - 616 1304 167702 77 0 13 7 483 541 50 chain 12426 chrX 155270560 + 93927084 93927234 THE1D-int 1627 - 8 158 150548 150 chain 25914 chrX 155270560 + 93940143 93940498 THE1A 353 + 0 353 100358 105 7 6 118 0 1 5 1 0 57 5 4 57 chain 40601 chrX 155270560 + 93953818 93954269 LTR7 482 - 0 482 68437 197 1 32 253 chain 295572 chrX 155270560 + 93955514 93959173 HERVH-int 3825 - 0 3825 13668 272 0 2 213 8 218 822 0 1 194 26 28 65 0 4 290 4 31 220 0 4 102 0 1 45 6 1 82 16 1 450 1 0 59 44 0 23 7 6 35 0 37 15 67 15 9 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 333 chain 39270 chrX 155270560 + 93959183 93959625 LTR7 482 - 8 481 70368 180 0 31 262 chain 40134 chrX 155270560 + 93959637 93960088 LTR7 482 - 0 482 69132 197 1 32 253 chain 34885 chrX 155270560 + 93960352 93960828 LTR2B 499 + 9 499 76361 5 1 0 51 5 0 25 15 34 175 0 1 6 0 1 10 1 0 182 chain 10239 chrX 155270560 + 93962285 93962432 MER4A1 472 - 325 472 159426 87 7 8 5 1 0 47 chain 24160 chrX 155270560 + 93962509 93962870 THE1A 353 - 0 351 109430 49 10 0 7 4 6 33 9 8 140 2 1 107 chain 5406 chrX 155270560 + 93966260 93966322 MER51A 677 + 460 522 190934 62 chain 6950 chrX 155270560 + 93967322 93967410 L1PA15 4387 + 1156 1244 177815 88 chain 3156 chrX 155270560 + 93970596 93970636 L1PA15 4387 + 4225 4265 221823 40 chain 3426 chrX 155270560 + 93977555 93977598 MLT1E3 631 + 526 569 216652 43 chain 45120 chrX 155270560 + 93978069 93978647 L1PBa 3878 - 1475 2050 62909 56 0 1 394 5 0 58 0 1 65 chain 457991 chrX 155270560 + 94018591 94024098 L1PA6 6164 - 6 5957 8470 141 1 0 6 0 1 151 0 1 4 1 0 6 0 1 513 0 1 30 0 1 610 12 6 7 1 0 29 2 1 494 0 1 631 1 0 247 0 1 4 1 0 55 0 1 6 0 13 417 0 4 431 11 14 1033 0 29 264 0 43 37 0 4 93 1 0 15 1 18 122 1 337 128 chain 32865 chrX 155270560 + 94033679 94034067 L1PA7 6471 - 1490 1880 79429 298 3 5 87 chain 119581 chrX 155270560 + 94034068 94035555 L1PA7 6471 + 4991 6469 31186 161 11 1 471 1 4 75 1 0 300 4 2 68 4 6 236 0 1 143 2 0 10 chain 5799 chrX 155270560 + 94042193 94042381 L1PB1 5432 + 5242 5403 187154 39 1 0 15 35 18 12 51 43 24 1 0 10 chain 126577 chrX 155270560 + 94045195 94046754 L1PA7 6471 - 1 1564 28925 140 9 10 188 0 1 40 0 1 390 0 2 77 4 3 405 0 1 4 1 0 301 chain 133146 chrX 155270560 + 94046755 94048429 L1PA7 6471 + 3233 4908 27400 183 0 1 2 6 0 130 0 4 282 0 1 48 10 3 42 0 2 46 6 12 272 1 0 299 4 5 218 1 0 25 0 2 46 1 0 52 chain 2889 chrX 155270560 + 94049288 94049320 L1PB 1623 + 1310 1342 227205 32 chain 24540 chrX 155270560 + 94049328 94049695 L1PB1 5432 + 4391 5157 107310 19 0 417 175 27 13 88 1 2 10 3 0 23 1 0 6 1 0 13 chain 33685 chrX 155270560 + 94060420 94060792 L1PA3long 6157 + 5785 6157 78118 372 chain 48893 chrX 155270560 + 94067943 94068514 L1PA5 6144 + 5577 6138 59812 419 1 0 20 9 0 122 chain 32062 chrX 155270560 + 94074211 94074603 MLT2A1 477 - 74 463 80750 234 5 2 153 chain 425722 chrX 155270560 + 94074923 94080356 HERVL-int 5654 - 0 5466 9403 368 0 3 58 9 0 369 10 17 621 0 7 6 3 9 331 2 1 737 9 21 150 0 1 4 1 0 256 0 1 4 6 5 137 1 2 708 12 16 475 0 1 275 4 5 19 0 1 389 3 4 57 5 4 404 chain 206590 chrX 155270560 + 94080369 94082692 L1PA4 6152 - 0 2315 18749 1029 0 1 516 11 1 666 0 1 101 chain 14417 chrX 155270560 + 94082692 94082864 L1PA4 6152 + 3671 3843 142643 172 chain 31446 chrX 155270560 + 94083043 94083531 MLT2A1 477 - 0 477 81741 35 54 51 6 0 2 63 8 1 149 6 3 167 chain 2143 chrX 155270560 + 94091364 94091927 L1MA1 4479 - 322 887 74179 6 1 0 9 1 0 35 2 0 29 1 0 126 3 0 5 1 0 88 1 0 13 2 0 20 1 0 27 0 1 43 1 0 9 10 8 24 1 0 4 7 25 93 chain 517159 chrX 155270560 + 94094205 94100648 L1PA7 6471 - 1 6471 5464 12 2 1 4 0 1 37 0 4 259 0 1 264 0 1 41 13 12 131 0 2 77 3 0 549 0 8 39 8 0 148 0 6 308 4 5 52 12 1 479 0 1 23 4 0 390 3 4 57 0 4 897 17 15 114 1 3 44 6 7 124 0 1 202 0 1 167 0 17 146 1 2 280 0 1 149 1 0 45 1 2 920 1 3 331 0 1 77 chain 1180 chrX 155270560 + 94100655 94100965 L1MA1 4479 - 2794 3107 74179 217 3 2 25 24 28 41 chain 539831 chrX 155270560 + 94117378 94123395 L1PA3long 6157 + 4 6156 2841 149 0 1 614 8 136 1682 0 1 682 8 12 2721 0 1 153 chain 49013 chrX 155270560 + 94176580 94177183 L1PA8A 6298 + 5691 6291 59736 266 2 0 62 2 1 271 chain 440844 chrX 155270560 + 94197412 94203749 L1PA8A 6298 + 44 6291 9033 12 1 0 9 10 5 7 6 0 19 8 5 18 22 13 17 1 0 4 25 26 10 2 0 15 2 0 4 1 0 12 3 2 7 1 0 8 1 0 7 1 0 13 129 113 37 2 0 19 1 0 6 6 4 79 7 6 23 0 143 9 143 0 112 4 0 195 12 13 345 1 0 73 5 8 189 1 2 4 1 0 50 43 45 305 7 8 460 18 0 91 1 0 5 3 4 92 10 11 50 0 4 198 7 11 176 20 22 7 0 2 140 0 4 375 10 1 177 51 8 445 8 10 260 0 1 226 28 23 494 0 16 47 0 2 6 5 2 73 0 3 800 chain 3959 chrX 155270560 + 94250606 94250685 MER11A 1151 - 1008 1096 207999 32 23 32 24 chain 6418 chrX 155270560 + 94250698 94250776 MER11A 1151 - 921 997 181882 31 2 0 45 chain 43097 chrX 155270560 + 94252758 94253280 L1PA7 6471 - 7 530 65291 39 0 1 483 chain 13215 chrX 155270560 + 94256848 94257147 L1PB1 5432 - 2 274 147409 8 2 0 18 1 0 23 2 1 10 1 0 24 2 0 10 12 9 16 19 9 6 3 0 16 7 6 37 1 0 16 2 1 11 0 1 41 2 0 9 chain 98450 chrX 155270560 + 94257158 94258431 L1PB1 5432 + 3847 5115 37174 322 1 0 38 4 5 168 0 1 245 3 0 191 37 31 253 1 4 10 chain 16874 chrX 155270560 + 94325919 94326149 L1PA8 5853 + 5623 5853 135906 56 1 0 15 2 1 34 0 4 10 1 0 17 1 0 93 chain 10638 chrX 155270560 + 94342337 94342652 L1PB1 5432 + 5114 5399 157662 24 1 0 4 5 4 10 2 0 3 2 0 9 2 0 44 11 9 16 1 0 26 0 1 17 89 71 18 1 0 22 1 0 7 chain 40038 chrX 155270560 + 94347675 94348126 LTR7 482 + 0 482 69261 263 1 32 187 chain 11331 chrX 155270560 + 94358647 94358818 MER9a3 513 - 0 174 154959 66 0 2 2 2 0 9 1 2 46 6 8 39 chain 202329 chrX 155270560 + 94358840 94362438 HERVK9-int 4720 - 1489 4684 19038 888 9 739 29 1 0 74 0 1 5 2 1 382 1120 0 624 6 1 325 1 0 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 85869 chrX 155270560 + 94360242 94361311 MER11B 1079 + 6 1063 41207 17 0 1 74 1 0 161 3 0 300 37 36 73 1 0 104 6 0 72 1 0 219 chain 40726 chrX 155270560 + 94363752 94364259 MER9a3 513 - 0 513 68272 77 2 3 177 1 0 14 0 1 81 0 1 48 0 1 50 0 1 39 0 2 18 chain 9535 chrX 155270560 + 94366530 94366645 L1PA4 6152 + 6032 6152 162909 109 0 5 6 chain 4110 chrX 155270560 + 94389289 94389366 MADE1 96 - 0 93 205775 15 20 36 42 chain 19472 chrX 155270560 + 94414499 94414879 THE1D 372 + 14 372 128747 38 61 39 9 3 2 64 44 45 161 chain 39725 chrX 155270560 + 94427582 94428150 MER4A1_ 611 + 0 599 69721 122 0 1 165 0 6 59 55 79 167 chain 39965 chrX 155270560 + 94459522 94460009 MER9a3 513 + 20 508 69372 90 0 1 145 1 0 174 5 6 72 chain 45752 chrX 155270560 + 94468771 94469295 L1PA5 6144 - 936 1462 62273 214 0 2 310 chain 78697 chrX 155270560 + 94469295 94470213 L1PA5 6144 + 5222 6143 44191 72 1 0 55 0 3 453 0 1 337 chain 420846 chrX 155270560 + 94480292 94485843 L1PA8 5853 + 50 5853 9516 21 2 0 5 2 1 5 1 0 14 32 12 162 5 0 31 19 7 471 0 97 152 0 197 194 1 0 141 0 1 103 26 6 229 7 9 107 9 6 24 1 3 165 0 30 6 30 0 595 43 38 112 5 6 20 0 10 299 1 2 618 7 8 489 0 5 18 0 1 330 0 1 8 0 1 83 0 9 31 0 1 17 0 1 53 6 9 70 8 3 340 0 1 136 1 0 46 2 0 43 2 1 25 1 0 8 5 4 52 1 0 17 1 0 93 chain 19394 chrX 155270560 + 94500037 94500359 L1MA1 4479 + 3760 4078 128962 66 1 0 17 26 25 49 9 11 18 1 0 6 4 1 125 chain 27127 chrX 155270560 + 94506355 94506935 L1PB1 5432 - 10 511 95840 18 1 0 13 1 0 21 1 0 24 2 0 14 9 6 17 23 13 15 2 1 43 19 17 52 2 0 9 5 1 14 1 0 10 5 4 16 69 19 111 0 1 4 1 0 58 chain 194871 chrX 155270560 + 94515727 94518066 L1PA7 6471 + 4104 6469 19592 163 0 7 225 6 4 45 0 15 1137 1 2 281 0 1 154 0 1 223 0 1 88 1 3 15 chain 17169 chrX 155270560 + 94524448 94524725 THE1B-int 1605 - 1351 1574 135112 144 0 3 11 57 0 65 chain 52158 chrX 155270560 + 94540335 94540962 L1PA6 6164 - 2 630 57520 9 1 0 434 3 5 180 chain 5435 chrX 155270560 + 94544084 94544171 LTR9 672 + 0 88 190651 57 10 11 20 chain 14743 chrX 155270560 + 94554675 94554862 L1PA8 5853 + 4212 4403 142126 5 0 3 139 4 5 39 chain 23523 chrX 155270560 + 94554865 94555265 L1PA8 5853 + 4407 4716 112999 94 94 1 76 0 1 108 5 6 23 chain 8255 chrX 155270560 + 94555272 94555368 L1PA8 5853 + 4722 4818 169651 96 chain 78512 chrX 155270560 + 94555378 94556416 L1PA8 5853 + 4824 5853 44263 182 6 3 220 0 2 96 0 1 234 1 0 46 2 0 65 17 15 8 1 0 44 2 1 19 1 0 15 6 5 73 chain 35044 chrX 155270560 + 94567953 94568338 L1PA4 6152 - 16 401 76125 385 chain 7279 chrX 155270560 + 94590039 94590130 L1PBa 3878 + 2179 2270 175583 91 chain 13477 chrX 155270560 + 94596234 94596453 THE1B 368 + 0 243 146426 38 0 15 55 25 34 24 1 0 11 1 0 23 0 2 41 chain 46631 chrX 155270560 + 94596503 94597104 THE1B-int 1605 + 995 1602 61516 47 4 0 68 12 13 93 0 9 377 chain 224175 chrX 155270560 + 94607869 94610351 L1PA3long 6157 - 1 2484 17641 5 0 2 7 3 0 647 0 3 33 1 0 1786 chain 62520 chrX 155270560 + 94624922 94625621 L1PA3long 6157 - 0 695 51670 149 4 0 546 chain 90746 chrX 155270560 + 94625621 94626618 L1PA3long 6157 + 4457 5454 39375 997 chain 95931 chrX 155270560 + 94630368 94631853 L1PB3 3668 + 2124 3592 37840 218 0 1 29 1 0 68 1 0 151 0 1 6 1 0 53 32 34 38 32 36 188 5 4 4 0 1 32 2 0 6 13 9 241 0 4 42 1 0 70 0 3 20 8 7 79 0 1 7 42 27 24 3 1 34 10 6 13 1 0 10 chain 32905 chrX 155270560 + 94647882 94648254 L1PA4 6152 + 5768 6141 79362 228 0 1 144 chain 107568 chrX 155270560 + 94659379 94660704 L1P3 4156 + 1754 3081 34832 410 1 2 63 1 0 68 1 2 128 1 0 90 0 2 562 chain 38976 chrX 155270560 + 94687011 94687444 L1PA3long 6157 + 5724 6157 70774 433 chain 98887 chrX 155270560 + 94693944 94695030 L1PA3long 6157 + 5070 6157 37056 236 0 1 850 chain 11753 chrX 155270560 + 94703666 94703846 L1MA2 4263 - 158 330 153249 35 0 1 11 7 0 93 11 9 23 chain 11564 chrX 155270560 + 94717753 94717883 L1PA5 6144 + 6014 6144 154048 130 chain 3987 chrX 155270560 + 94718018 94718092 L1M4c 1769 + 1144 1216 207574 31 11 9 32 chain 30240 chrX 155270560 + 94724369 94724744 MLT2A1 477 - 103 477 84086 169 0 1 24 0 1 8 3 0 171 chain 6075 chrX 155270560 + 94734722 94734798 Tigger3b 1229 - 1125 1201 184618 76 chain 18838 chrX 155270560 + 94739298 94739626 L1MA3 4352 + 3981 4282 130551 100 1 0 6 61 37 136 2 0 22 chain 26601 chrX 155270560 + 94748213 94748568 THE1A 353 + 0 353 97655 24 0 1 86 1 0 71 5 6 14 3 0 151 chain 124487 chrX 155270560 + 94748568 94750136 THE1A-int 1579 + 0 1574 29547 76 1 0 37 0 3 57 1 4 311 0 1 142 8 7 17 5 4 331 0 1 543 1 0 5 0 1 26 0 1 7 chain 70059 chrX 155270560 + 94753450 94754231 L1PA5 6144 - 180 969 48366 434 0 4 231 0 4 116 chain 14326 chrX 155270560 + 94754231 94754397 L1PA5 6144 + 5972 6138 143472 166 chain 27939 chrX 155270560 + 94756554 94756908 MLT2A1 477 - 116 476 93208 187 1 5 26 0 1 53 0 1 87 chain 20136 chrX 155270560 + 94774490 94774706 L1PA3long 6157 - 4 220 126726 216 chain 6144 chrX 155270560 + 94774706 94774789 L1PA3long 6157 + 5872 5954 184043 22 5 4 56 chain 48440 chrX 155270560 + 94779656 94780422 L1MA1 4479 + 424 1198 60155 241 9 12 7 5 0 29 46 51 20 8 0 6 11 19 8 0 3 34 1 0 193 0 4 102 2 1 44 chain 540939 chrX 155270560 + 94798893 94804903 L1PA3long 6157 - 0 6155 2673 462 0 1 386 0 4 2374 6 8 152 0 1 247 1 0 241 0 5 1372 0 128 34 0 1 176 0 2 104 0 1 305 1 2 149 chain 65400 chrX 155270560 + 94813260 94814040 L1PA7 6471 - 10 794 50376 146 1 0 6 1 2 33 0 1 411 0 3 182 chain 13305 chrX 155270560 + 94822208 94822375 L1MA2 4263 + 2259 2426 147064 167 chain 46644 chrX 155270560 + 94835379 94836004 MER4A 717 + 85 717 61498 260 0 1 59 0 2 50 8 11 218 6 7 24 chain 12151 chrX 155270560 + 94842893 94843056 Tigger2a 444 - 226 390 151614 18 1 2 115 1 0 8 0 1 20 chain 85079 chrX 155270560 + 94855568 94856476 L1HS 6032 - 680 1588 41487 908 chain 60985 chrX 155270560 + 94856476 94857132 L1HS 6032 + 5376 6032 52341 656 chain 520926 chrX 155270560 + 94867977 94874401 L1PA7 6471 - 7 6464 5065 95 0 17 29 2 3 11 1 0 66 0 2 103 0 2 432 0 1 71 1 2 5 0 1 324 5 10 290 0 1 554 12 24 684 1 0 130 0 1 25 0 1 77 1 0 758 5 13 100 8 7 103 0 9 723 0 1 40 1 6 450 13 12 311 5 4 554 10 0 28 2 0 291 17 0 86 chain 9525 chrX 155270560 + 94897813 94897923 L1P1 4361 + 4219 4328 162953 86 1 0 23 chain 14813 chrX 155270560 + 94909959 94910315 THE1D 372 - 7 372 141900 23 14 20 83 0 6 40 26 28 42 76 69 32 7 9 13 chain 36167 chrX 155270560 + 94915515 94915943 LTR2 463 + 0 433 74680 57 2 1 206 0 5 99 0 1 64 chain 19193 chrX 155270560 + 94918503 94918725 L1PA7 6471 + 6245 6467 129546 222 chain 8467 chrX 155270560 + 94933301 94933406 MSTA 426 + 321 426 168478 105 chain 7290 chrX 155270560 + 94956205 94956307 L1PB2 3958 + 2853 2955 175508 20 0 1 48 6 5 28 chain 101943 chrX 155270560 + 94956824 94958324 L1PB2 3958 - 1314 2817 36279 120 6 5 34 19 14 37 9 14 336 6 7 52 1 0 156 9 1 96 10 7 31 8 0 142 2 0 23 13 14 229 10 30 8 0 1 13 10 11 7 0 1 59 0 1 54 chain 25323 chrX 155270560 + 94965603 94965917 AluYf4 310 + 0 307 103110 132 12 7 67 0 1 75 3 0 25 chain 29971 chrX 155270560 + 94968087 94968454 MLT2A1 477 + 0 371 84908 168 1 5 198 chain 135077 chrX 155270560 + 94968674 94970403 HERVL-int 5654 + 0 5654 27001 42 1 2 78 0 1 152 0 3906 12 0 1 560 1 0 4 0 1 211 1 2 28 1 2 145 1 12 328 0 3 164 chain 32665 chrX 155270560 + 94970403 94970833 MLT2A1 477 + 0 425 79739 164 5 9 21 1 0 205 4 0 8 4 0 18 chain 70863 chrX 155270560 + 94989483 94990271 L1PA2 6032 + 5244 6032 47979 622 5 0 7 1 6 153 chain 36591 chrX 155270560 + 94999497 94999979 L1PA13 3608 + 624 1100 74108 7 2 0 130 0 1 319 5 0 19 chain 2997 chrX 155270560 + 95006199 95006236 L1MA8 2339 - 294 331 225086 37 chain 26027 chrX 155270560 + 95008960 95009294 L1PA11 4918 - 2312 2650 99908 318 1 5 15 chain 5082 chrX 155270560 + 95011767 95011846 L1PA10 4194 - 47 123 194273 4 0 1 25 9 5 41 chain 14138 chrX 155270560 + 95017797 95018159 MLT1A 405 + 11 367 144078 108 13 23 28 150 134 63 chain 23849 chrX 155270560 + 95024188 95024469 AluY 311 + 0 286 111185 52 1 5 75 0 1 153 chain 156895 chrX 155270560 + 95024852 95026725 L1PA6 6164 + 2266 6156 23741 59 15 0 63 0 2 387 0 2021 265 0 11 40 2 1 200 1 0 89 1 0 614 0 1 137 chain 20789 chrX 155270560 + 95040095 95040475 L1MA3 4352 + 3988 4332 124650 105 35 13 6 3 0 124 4 0 24 3 0 22 12 10 18 5 4 14 1 0 4 chain 140702 chrX 155270560 + 95064846 95066358 L1HS 6032 - 2 1515 26037 1467 0 1 45 chain 115873 chrX 155270560 + 95066358 95067589 L1HS 6032 + 3311 4542 32324 1231 chain 206697 chrX 155270560 + 95085756 95088778 L1PA14 3548 - 64 3085 18739 19 1 0 9 6 0 42 1 0 10 1 7 4 1 0 13 10 8 29 5 1 10 6 5 106 1 0 20 1 0 21 6 5 38 1 0 6 2 0 15 10 6 105 2 0 5 2 0 23 1 0 24 2 0 5 0 1 8 3 1 63 0 17 68 24 20 36 2 0 46 1 0 47 0 1 85 21 49 529 2 1 24 0 1 155 3 1 6 12 0 276 6 10 43 0 2 10 6 4 423 0 1 60 10 8 76 3 2 206 1 0 156 0 1 48 chain 37215 chrX 155270560 + 95093371 95093920 L1PA16 3655 + 2958 3578 73219 61 22 96 76 28 27 72 2 0 288 chain 126604 chrX 155270560 + 95106454 95107823 L1PA3long 6157 + 4788 6157 28918 1369 chain 55863 chrX 155270560 + 95109516 95110140 L1PA4 6152 + 5523 6152 55204 618 0 5 6 chain 54565 chrX 155270560 + 95110152 95110986 L1MA1 4479 + 3313 4129 55986 76 4 1 119 14 11 195 1 0 24 2 0 16 1 0 46 0 1 24 1 0 19 2 0 102 17 13 118 2 1 18 17 16 16 chain 472418 chrX 155270560 + 95122500 95128710 L1PA8A 6298 + 129 6289 7959 19 1 0 9 2 1 12 1 0 7 1 0 12 91 77 43 1 0 21 65 9 69 2 0 13 2 1 9 6 4 72 8 7 84 1 0 236 12 13 248 60 53 76 0 1 41 0 3 117 0 1 61 1 7 102 0 3 281 1 4 192 0 1 462 0 1 79 17 1 602 0 1 75 1 0 4 0 1 10 14 13 158 1 4 170 0 1 119 8 20 97 18 24 5 1 0 940 1 0 664 0 3 89 2 4 167 0 1 381 2 0 33 13 24 98 chain 7128 chrX 155270560 + 95175320 95175448 L1MA3 4352 - 44 164 176555 17 11 9 23 2 0 23 4 0 48 chain 62849 chrX 155270560 + 95181034 95181777 L1PA7 6471 + 5732 6466 51512 465 0 1 20 8 0 180 1 3 57 4 0 8 chain 287814 chrX 155270560 + 95191086 95195067 L1PB1 5432 - 334 4290 14170 47 1 0 206 0 1 34 4 0 184 3 0 443 18 29 192 1 0 62 19 0 173 1 0 97 0 1 122 20 21 87 7 1 316 1 2 23 0 1 33 3 1 180 1 0 330 0 10 6 5 0 243 0 1 231 7 13 155 21 16 224 0 1 38 18 3 42 1 0 116 0 18 11 16 3 149 1 3 72 0 1 8 3 0 6 chain 16074 chrX 155270560 + 95195782 95195995 L1PBa 3878 + 217 428 138136 20 3 1 190 chain 31025 chrX 155270560 + 95214098 95214482 MLT2A1 477 - 94 477 82474 179 0 1 23 0 1 9 4 1 169 chain 451545 chrX 155270560 + 95214482 95220354 HERVL-int 5654 - 0 5651 8718 74 0 3 352 42 0 46 0 1 445 0 1 196 1 7 199 0 1 361 0 2 530 128 12 134 0 3 14 13 0 66 0 1 496 8 10 654 2 3 170 0 1 100 1 2 424 1 0 228 12 9 357 0 1 99 1 0 19 0 2 317 0 5 138 68 0 78 3 0 77 5 0 13 chain 9854 chrX 155270560 + 95216728 95216837 HERVL-int 5654 + 4305 4414 161326 109 chain 29783 chrX 155270560 + 95220502 95220913 MLT2A1 477 - 66 477 85534 8 1 0 19 0 2 166 16 17 19 0 1 10 5 2 167 chain 49284 chrX 155270560 + 95229510 95230187 L1PBa1 4058 + 93 749 59524 132 32 14 194 3 1 186 11 10 119 chain 13802 chrX 155270560 + 95235775 95236123 L1PB1 5432 - 10 318 145261 18 1 0 13 1 0 12 14 13 14 8 6 14 9 6 18 8 0 8 2 0 4 1 0 12 1 0 27 0 1 18 2 1 15 1 0 54 48 30 4 1 0 20 chain 310862 chrX 155270560 + 95265398 95269185 L1PA7 6471 + 2715 6466 12965 368 4 5 8 0 4 155 16 0 247 0 1 492 45 12 50 0 3 99 0 1 317 0 1 370 0 1 4 2 1 126 1 2 419 0 1 219 1 0 88 0 1 595 5 4 143 0 1 13 chain 37801 chrX 155270560 + 95275490 95275903 L1P1 4361 - 2377 2790 72414 413 chain 54157 chrX 155270560 + 95275903 95276508 L1PA3long 6157 + 5551 6157 56257 246 0 1 26 1 0 183 0 1 149 chain 2965 chrX 155270560 + 95287180 95287211 HY3 101 - 5 36 225765 31 chain 16700 chrX 155270560 + 95290362 95290557 L1PA7 6471 + 6266 6461 136406 195 chain 83463 chrX 155270560 + 95305305 95306250 SVA_D 2077 - 17 1273 42132 430 1 2 210 0 49 188 0 263 15 2 0 99 chain 101159 chrX 155270560 + 95309745 95312760 L1PA3long 6157 - 0 3012 12114 148 9 2 707 0 1 1141 0 3 268 1 0 716 0 1 25 chain 566627 chrX 155270560 + 95312810 95318841 L1HS 6032 - 0 6031 113 6031 chain 27076 chrX 155270560 + 95318844 95319651 L1PA3long 6157 - 3012 3823 12114 42 0 2 264 0 2 501 chain 37762 chrX 155270560 + 95330314 95330810 L1PA7 6471 - 12 507 72475 135 39 5 12 0 32 105 0 1 205 chain 10631 chrX 155270560 + 95330810 95330933 L1PA7 6471 + 5837 5960 157691 123 chain 9088 chrX 155270560 + 95333151 95333249 L1PA2 6032 - 1958 2056 164199 98 chain 179694 chrX 155270560 + 95333249 95335216 L1PA2 6032 + 4061 6032 21018 166 1 5 1800 chain 12299 chrX 155270560 + 95337048 95337236 L1MA4 2864 + 2008 2175 151014 17 6 0 93 1 0 50 14 0 7 chain 4099 chrX 155270560 + 95363340 95363385 MADE1 96 - 51 96 205962 45 chain 61178 chrX 155270560 + 95371846 95372785 L1MA2 4263 - 160 1069 52260 45 7 0 93 20 17 83 6 4 4 0 1 36 6 0 14 17 14 60 1 0 70 1 0 65 18 13 17 5 4 186 6 3 94 0 1 85 chain 71714 chrX 155270560 + 95375184 95376016 L1PA7 6471 - 269 1102 47602 107 0 1 390 0 1 82 2 1 251 chain 11667 chrX 155270560 + 95376016 95376147 L1PA7 6471 + 6176 6307 153611 131 chain 11846 chrX 155270560 + 95376168 95376303 L1PA7 6471 + 6329 6464 152845 135 chain 111531 chrX 155270560 + 95376308 95378074 L1PB2 3958 + 2077 3838 33801 194 0 4 7 8 13 23 1 0 16 1 0 15 0 4 8 4 0 33 0 1 77 12 9 220 0 1 37 0 1 4 1 0 91 28 27 51 12 11 123 0 1 44 0 7 20 30 31 59 4 0 76 14 12 63 2 1 13 4 0 65 2 0 14 28 29 49 10 9 78 3 2 61 2 1 71 2 0 22 1 0 63 chain 4267 chrX 155270560 + 95400458 95400507 L1PA15 4387 + 3040 3089 203663 49 chain 9557 chrX 155270560 + 95406259 95406362 L1PA2 6032 - 256 359 162797 103 chain 24621 chrX 155270560 + 95406362 95406637 L1PA2 6032 + 5757 6032 106877 275 chain 6746 chrX 155270560 + 95417989 95418087 PABL_B 668 - 41 139 179352 73 0 1 4 6 5 15 chain 100228 chrX 155270560 + 95429580 95430671 L1PA3long 6157 + 5061 6152 36714 1091 chain 325062 chrX 155270560 + 95442058 95445657 L1PA3long 6157 + 2547 6153 12386 1494 0 4 77 0 2 290 4 5 1734 chain 31199 chrX 155270560 + 95449538 95449922 MLT2A1 477 - 96 477 82164 58 1 0 152 3 0 30 0 1 140 chain 19214 chrX 155270560 + 95452516 95452735 AluSp 311 + 81 300 129489 219 chain 16794 chrX 155270560 + 95453285 95453533 L1PA8 5853 + 5609 5853 136128 73 8 6 44 14 13 15 1 0 93 chain 54940 chrX 155270560 + 95462208 95463072 L1MA1 4479 + 3295 4142 55748 16 5 0 79 12 9 46 10 13 52 13 13 192 0 1 4 2 0 13 8 6 16 1 0 11 0 1 78 2 0 14 1 0 89 29 25 7 0 1 97 1 0 29 2 0 35 chain 485189 chrX 155270560 + 95469642 95475658 L1PA7 6471 + 414 6461 7551 651 4 5 107 0 3 685 5 20 278 0 4 96 16 15 361 9 0 62 4 7 316 15 16 199 0 2 580 15 8 172 1 4 92 0 2 5 6 7 87 6 5 316 1 3 149 0 4 260 0 1 602 0 1 4 1 0 71 0 4 82 3 2 205 1 2 227 0 1 290 7 9 25 chain 20605 chrX 155270560 + 95475673 95475989 THE1D 372 - 34 372 125277 99 10 16 30 0 1 5 18 23 89 8 18 57 chain 25389 chrX 155270560 + 95481353 95481706 THE1A 353 - 0 353 102743 74 0 1 80 6 4 11 3 4 38 1 0 31 2 1 26 0 1 55 0 1 26 chain 108953 chrX 155270560 + 95481706 95483012 THE1A-int 1579 - 0 1308 34451 9 0 1 636 2 3 427 0 1 4 1 0 227 chain 25630 chrX 155270560 + 95483048 95483407 THE1A 353 - 0 353 101584 86 1 0 52 16 13 60 1 0 32 1 0 110 chain 179983 chrX 155270560 + 95492090 95494227 L1PA7 6471 - 7 2165 20993 122 0 1 210 0 1 427 2 3 83 0 3 405 0 2 145 0 3 144 1 0 138 0 3 165 0 2 36 0 1 169 0 5 90 chain 20331 chrX 155270560 + 95495403 95495673 AluSp 311 + 11 286 126135 24 15 23 74 3 0 154 chain 113404 chrX 155270560 + 95504005 95505282 L1PA4 6152 + 4863 6141 33252 28 0 1 673 0 1 326 1 0 249 chain 24999 chrX 155270560 + 95505446 95505737 AluSp 311 - 19 310 104793 291 chain 350405 chrX 155270560 + 95509212 95513373 L1PA5 6144 - 0 4165 11589 497 0 1 951 181 191 828 3 0 4 0 1 440 1 0 557 4 0 695 chain 15737 chrX 155270560 + 95510660 95510838 L1PA5 6144 - 318 496 138871 178 chain 34335 chrX 155270560 + 95513561 95514085 MER39B 650 - 116 650 77156 174 3 7 60 17 26 31 7 6 54 3 2 63 0 13 9 14 0 89 chain 43521 chrX 155270560 + 95516363 95516861 L1PA5 6144 + 5629 6132 64780 352 1 6 145 chain 547314 chrX 155270560 + 95524390 95530519 L1PA3long 6157 + 4 6157 1793 606 0 6 97 1 2 696 0 9 838 0 2 9 2 0 844 0 1 306 1 0 185 0 1 1519 0 1 178 0 4 78 0 2 769 chain 329970 chrX 155270560 + 95530773 95535268 L1PB1 5432 + 943 5422 12204 441 13 9 17 0 1 79 1 0 444 0 6 496 1 0 60 0 7 9 0 1 39 0 4 264 2 0 6 27 24 219 0 1 93 2 1 552 8 18 292 0 1 141 10 21 253 0 6 173 3 0 23 5 3 163 1 0 6 0 1 286 2 3 8 17 0 24 8 6 16 4 0 8 2 0 51 1 0 17 1 0 45 1 0 13 26 14 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 3111 chrX 155270560 + 95545389 95545435 LTR53 516 - 88 144 222719 4 1 0 8 0 11 33 chain 14019 chrX 155270560 + 95546848 95547025 L1PA7 6471 + 3379 3555 144507 124 1 0 52 chain 36444 chrX 155270560 + 95547032 95547459 L1PA7 6471 + 3572 4000 74305 299 0 1 128 chain 38751 chrX 155270560 + 95547473 95547961 L1PA7 6471 + 4011 4499 71077 116 1 0 20 9 10 342 chain 92672 chrX 155270560 + 95547968 95549082 L1PA7 6471 + 4508 5622 38763 1114 chain 70841 chrX 155270560 + 95549084 95549933 L1PA7 6471 + 5622 6469 47995 280 3 1 566 chain 117931 chrX 155270560 + 95557577 95558892 L1PA5 6144 + 4821 6137 31826 473 1 0 378 0 2 463 chain 24689 chrX 155270560 + 95562969 95563256 AluY 311 + 16 304 106499 110 0 1 177 chain 18672 chrX 155270560 + 95566361 95566709 THE1C 375 - 2 375 131027 130 6 0 9 1 0 4 0 3 32 8 9 19 1 17 46 38 57 11 5 0 22 2 0 14 chain 3562 chrX 155270560 + 95570602 95570647 MSTC 436 - 381 427 214278 34 0 1 11 chain 75498 chrX 155270560 + 95570804 95571881 L1PB1 5432 - 201 1253 45768 10 2 1 52 2 0 9 5 1 12 1 0 8 1 0 35 6 5 101 3 2 100 0 1 40 0 2 16 0 3 153 8 0 43 12 9 116 21 9 115 0 3 206 chain 79728 chrX 155270560 + 95575066 95576947 L1PB2 3958 - 1632 2749 43720 93 14 10 159 23 16 126 7 4 225 1 0 102 752 2 286 3 8 41 5 0 32 0 1 12 chain 63013 chrX 155270560 + 95575834 95576567 L1PA7 6471 - 4 737 51439 733 chain 22190 chrX 155270560 + 95576960 95577210 L1PA5 6144 - 9 259 119395 250 chain 21811 chrX 155270560 + 95582166 95582440 AluSc 308 + 8 288 120975 39 4 10 231 chain 487329 chrX 155270560 + 95600383 95605979 L1PA5 6144 - 9 6144 7467 124 5 12 12 7 0 23 0 3 433 0 1 8 0 1 219 0 5 1573 0 1 218 0 1 270 1 0 61 1 0 620 0 1 202 0 1 151 0 2 1577 0 525 91 chain 55796 chrX 155270560 + 95615735 95616492 L1PA8 5853 + 5099 5853 55248 48 5 0 417 1 0 45 1 9 61 1 0 5 20 18 38 2 1 19 6 5 88 chain 53736 chrX 155270560 + 95618299 95618890 L1PA4 6152 + 5555 6146 56512 591 chain 107186 chrX 155270560 + 95621177 95622661 L1PB1 5432 - 19 1472 34920 9 1 0 13 1 0 21 1 0 24 24 19 19 24 12 16 1 0 43 1 0 18 1 0 35 0 3 14 2 0 8 17 12 9 1 0 23 5 0 8 4 7 474 3 0 5 0 1 239 0 1 53 0 1 6 0 1 218 2 0 141 chain 21007 chrX 155270560 + 95623909 95624495 Tigger3b 1229 + 719 1148 123885 12 35 1 43 4 3 12 2 0 7 2 9 14 31 1 21 102 41 110 15 29 62 53 0 11 0 3 50 chain 26032 chrX 155270560 + 95636291 95636637 THE1B 368 - 0 357 99893 169 3 0 16 1 0 4 0 1 9 1 0 110 0 15 33 chain 11750 chrX 155270560 + 95651707 95651876 Tigger3c 601 + 406 578 153259 120 13 16 36 chain 349741 chrX 155270560 + 95680607 95684977 L1PA7 6471 - 10 6403 11616 138 2 1 177 8 9 519 0 3 800 4 6 17 15 1696 260 0 6 39 15 21 28 1 337 26 8 3 192 0 1 208 1 2 753 0 4 333 1 12 11 1 2 4 1 0 150 0 10 67 31 6 46 10 0 168 11 13 325 chain 7304 chrX 155270560 + 95708405 95708605 MLT1A0 366 - 65 255 175417 53 8 9 21 81 70 37 chain 45696 chrX 155270560 + 95737542 95738226 MER50B 698 - 43 698 62316 103 8 9 61 3 2 48 21 1 92 0 1 101 37 26 44 0 1 39 5 6 59 5 4 58 chain 522049 chrX 155270560 + 95741662 95747564 L1PA4 6152 + 3 6146 4953 95 6 223 17 7 8 795 0 24 1592 0 1 282 0 1 648 1 0 1612 1 0 517 2 1 327 chain 4339 chrX 155270560 + 95752096 95752146 MLT2B4 540 + 341 391 202732 50 chain 75035 chrX 155270560 + 95756875 95757888 L1PA16 3655 - 455 1480 46001 265 0 1 17 1 0 18 2 1 9 2 6 209 1 0 13 1 2 112 0 1 147 0 2 48 4 9 117 0 1 47 chain 14245 chrX 155270560 + 95763149 95763324 L1PA6 6164 - 3 181 143740 167 0 3 8 chain 131880 chrX 155270560 + 95766272 95767815 LTR12C 1709 - 0 1709 27660 29 0 4 299 0 2 147 0 4 107 2 0 6 1 0 115 0 159 523 1 0 4 0 1 309 chain 39912 chrX 155270560 + 95782215 95782659 L1PA4 6152 + 5707 6151 69439 444 chain 81482 chrX 155270560 + 95784594 95785563 L1PA6 6164 + 5183 6162 42979 120 0 11 809 0 1 31 2 0 7 chain 54060 chrX 155270560 + 95787974 95788664 L1P3 4156 + 3 696 56317 123 0 2 19 5 5 99 11 10 61 1 0 21 0 1 63 0 2 287 chain 37885 chrX 155270560 + 95826103 95826517 L1PA4 6152 + 5727 6141 72301 414 chain 16724 chrX 155270560 + 95837906 95838257 L1PB1 5432 - 12 327 136331 16 1 0 11 1 0 23 1 0 24 2 0 12 45 32 6 3 0 15 1 0 45 1 0 15 3 1 53 2 0 8 5 1 12 1 0 11 4 3 17 3 0 10 chain 479363 chrX 155270560 + 95839626 95845083 L1PA4 6152 + 672 6136 7749 186 4 0 148 0 10 219 2 0 1349 0 1 1193 2 1 834 5 1 106 1 5 569 0 1 456 0 1 123 0 1 260 chain 11759 chrX 155270560 + 95847039 95847248 MER1B 344 - 12 228 153225 45 38 52 15 7 0 104 chain 535544 chrX 155270560 + 95852639 95858780 L1PA5 6144 + 3 6144 3508 1044 1 2 88 5 4 94 1 0 20 15 4 24 0 1 337 0 2 47 0 4 267 0 1 1739 0 1 463 0 1 313 0 1 1351 1 0 319 1 3 11 chain 29235 chrX 155270560 + 95869660 95869972 AluYb8 318 + 0 312 87883 312 chain 30024 chrX 155270560 + 95873628 95874002 THE1C 375 - 0 375 84732 25 1 0 172 0 1 67 3 4 106 chain 314929 chrX 155270560 + 95879444 95883279 HERVH-int 3825 + 38 3825 12811 29 8 9 257 1 0 156 1 0 5 0 1 6 0 4 7 3 68 24 115 0 14 1 0 13 4 1 24 1 0 41 1 0 82 1 0 823 0 5 467 0 1 1104 1 0 646 chain 4814 chrX 155270560 + 95879941 95880056 HERVH-int 3825 + 614 683 187379 17 3 0 14 46 4 7 1 0 27 chain 25559 chrX 155270560 + 95885091 95885447 LTR7 482 + 1 482 101933 70 4 93 60 0 1 41 0 31 10 0 2 110 12 14 49 chain 91780 chrX 155270560 + 95887774 95888960 L1PA8A 6298 + 5112 6291 39036 90 9 10 244 21 0 7 1 21 57 3 0 27 1 3 39 1 0 22 1 0 374 2 1 208 3 0 76 chain 28527 chrX 155270560 + 95888978 95889278 AluYb8 318 - 18 318 91066 300 chain 243991 chrX 155270560 + 95912066 95915784 L1PA13 3608 + 123 3488 16563 15 3 0 26 2 1 12 3 0 24 29 17 41 0 1 29 8 6 121 1 0 12 1 0 17 2 0 8 15 10 18 1 0 17 9 7 11 2 0 18 1 0 97 2 0 45 18 20 151 0 1 927 0 3 137 20 21 92 0 1 300 0 1 72 40 18 38 1 0 91 0 4 239 2 3 59 0 1 178 1 0 99 0 2 26 1 0 36 10 1 76 2 0 63 28 27 17 288 0 4 1 0 12 2 0 47 2 0 5 2 0 18 1 0 22 chain 23608 chrX 155270560 + 95927151 95927495 THE1B 368 - 0 368 112535 125 17 29 10 8 6 30 1 0 113 0 15 40 chain 9403 chrX 155270560 + 95956507 95956618 HY1 111 - 0 111 163542 111 chain 24373 chrX 155270560 + 95963245 95963538 AluSg7 307 - 11 307 108240 28 0 1 9 0 1 125 0 1 131 chain 53116 chrX 155270560 + 95965715 95966583 L1PB1 5432 - 2 867 56953 5 1 0 11 11 9 12 1 0 23 1 0 24 2 0 14 1 0 5 3 1 18 25 30 41 1 0 12 6 5 51 21 13 12 1 0 6 1 0 24 21 19 123 0 11 105 6 4 147 0 2 75 3 0 19 0 4 21 0 4 15 chain 24788 chrX 155270560 + 95969264 95969562 AluSp 311 - 11 311 105953 35 0 2 263 chain 83191 chrX 155270560 + 95973652 95974850 L1MA3 4352 - 484 1681 42254 110 1 0 220 15 16 21 2 5 118 4 0 136 1 0 91 8 7 138 6 7 218 8 7 32 27 28 38 0 1 4 chain 34691 chrX 155270560 + 95985795 95986235 LTR7 482 - 8 482 76636 168 0 4 7 0 31 149 15 14 101 chain 28658 chrX 155270560 + 96006646 96006951 AluYa5 310 - 5 310 90494 305 chain 4433 chrX 155270560 + 96028922 96028987 MLT1B 390 + 323 390 201546 15 5 7 45 chain 30738 chrX 155270560 + 96032883 96033220 L1PA4 6152 - 1 338 82972 337 chain 6357 chrX 155270560 + 96040274 96040392 MLT1A1 405 - 30 180 182332 40 1 0 40 24 57 13 chain 43086 chrX 155270560 + 96057660 96058210 MLT2A2 560 - 0 560 65312 149 0 11 219 1 0 181 chain 519054 chrX 155270560 + 96064520 96070658 L1PA6 6164 - 2 6163 5259 11 1 0 1503 1 2 170 0 1 321 4 1 330 0 1 604 8 9 869 7 6 1510 0 17 173 5 4 105 2 1 59 3 2 80 0 9 88 2 1 4 0 1 214 5 6 59 chain 3481 chrX 155270560 + 96098549 96098593 MER61B 427 - 29 72 215648 4 1 0 39 chain 3916 chrX 155270560 + 96109787 96109839 MER44B 551 - 431 483 208612 52 chain 8691 chrX 155270560 + 96120211 96120338 MER85 139 - 0 139 167244 22 1 0 7 2 14 45 0 1 50 chain 20570 chrX 155270560 + 96127072 96127481 L1MA3 4352 - 42 490 125393 22 1 0 5 2 1 26 11 69 49 96 76 10 1 0 44 0 4 142 chain 27458 chrX 155270560 + 96130773 96131076 L1PA5 6144 + 4993 5297 94786 33 0 1 270 chain 74036 chrX 155270560 + 96131076 96131918 L1PA5 6144 + 5301 6143 46490 842 chain 213384 chrX 155270560 + 96152726 96155055 L1PA3long 6157 - 0 2331 18266 857 1 0 115 0 1 1286 0 2 70 chain 28320 chrX 155270560 + 96194667 96194961 AluYg6 310 - 16 310 91872 294 chain 11674 chrX 155270560 + 96222217 96222363 L1PA16 3655 - 77 226 153586 9 0 3 137 chain 8724 chrX 155270560 + 96228500 96228672 MER2 342 + 131 266 167066 42 40 3 58 2 0 6 0 2 24 chain 26101 chrX 155270560 + 96228687 96228985 AluSp 311 - 5 303 99616 298 chain 20000 chrX 155270560 + 96249573 96249929 THE1D 372 - 0 348 127148 148 1 0 24 55 56 64 15 16 9 9 0 31 chain 19512 chrX 155270560 + 96293237 96293536 L1PB3 3668 - 190 493 128619 76 33 35 60 0 3 14 1 0 115 chain 17081 chrX 155270560 + 96354176 96354379 AluY 311 + 93 298 135376 39 0 1 143 0 1 21 chain 118202 chrX 155270560 + 96373925 96375549 L1PBa1 4058 - 2418 4048 31729 5 0 1 134 3 1 42 2 1 191 10 1 28 1 0 10 1 14 104 1 0 219 0 1 58 3 12 34 4 3 215 1 0 111 1 0 4 0 1 109 1 0 84 1 0 63 7 8 20 0 12 98 1 0 7 8 6 7 10 0 26 chain 11640 chrX 155270560 + 96375566 96375739 MER30 238 + 65 238 153736 42 5 8 84 4 1 38 chain 45042 chrX 155270560 + 96383009 96383549 MER41A 554 - 12 554 63003 115 0 1 313 0 1 112 chain 26122 chrX 155270560 + 96412366 96412733 MER41C 542 + 143 535 99520 26 8 0 13 0 8 121 0 17 8 0 4 34 10 14 147 chain 115310 chrX 155270560 + 96434268 96436056 L1PA8A 6298 - 7 1509 32678 102 1 7 13 0 2 336 352 1 138 14 72 130 2 1 700 chain 24693 chrX 155270560 + 96436424 96436708 AluSp 311 - 26 311 106474 143 0 1 141 chain 2916 chrX 155270560 + 96446360 96446392 U2 167 + 0 32 226737 32 chain 450362 chrX 155270560 + 96455487 96461319 L1PA8 5853 + 50 5853 8756 21 2 0 11 1 0 8 51 18 34 1 2 85 1 0 5 0 1 48 37 25 288 0 4 21 0 4 13 3 0 6 12 13 8 0 1 536 0 2 348 0 5 468 19 0 40 1 0 337 0 10 74 0 3 163 2 0 5 1 3 77 2 1 5 0 1 138 1 0 338 0 1 173 7 6 32 1 0 4 0 1 491 1 3 398 6 5 194 5 4 49 2 1 277 0 1 148 0 7 45 0 7 60 0 5 432 1 0 46 2 0 68 24 22 40 2 1 19 1 0 93 chain 25176 chrX 155270560 + 96469547 96469860 AluSp 311 + 0 310 103866 21 1 0 264 2 0 25 chain 24108 chrX 155270560 + 96489051 96489359 AluSp 311 + 11 311 109699 117 8 0 10 5 5 168 chain 25375 chrX 155270560 + 96504827 96505122 AluSp 311 + 10 304 102803 81 0 3 204 4 0 6 chain 137216 chrX 155270560 + 96529643 96531307 SVA_C 1631 - 8 1630 26601 7 5 0 579 2 0 19 1 0 16 2 0 19 20 20 11 5 0 48 2 0 46 4 0 11 40 0 493 0 1 293 0 31 8 17 4 16 chain 22224 chrX 155270560 + 96567895 96568197 AluY 311 + 0 296 119241 125 7 1 48 14 14 108 chain 23776 chrX 155270560 + 96627688 96627988 AluSp 311 + 1 294 111615 119 3 0 8 4 0 166 chain 24232 chrX 155270560 + 96653740 96654042 AluSg7 307 - 9 307 109035 102 6 0 64 0 1 96 0 1 34 chain 516724 chrX 155270560 + 96664401 96670863 L1PA6 6164 + 0 6162 5514 63 1 2 394 7 6 185 0 4 139 17 0 504 0 8 504 0 2 157 0 1 358 2 3 859 0 1 335 1 0 536 0 2 98 0 2 101 3 5 255 4 1 24 0 1 129 1 0 280 312 0 43 0 1 140 0 9 160 0 4 838 4 0 8 chain 10634 chrX 155270560 + 96672763 96673119 MER44B 551 - 24 473 157680 17 18 0 15 7 27 15 9 3 61 3 0 5 19 73 17 107 153 63 chain 22819 chrX 155270560 + 96683247 96683550 AluSp 311 + 1 298 116494 108 1 2 21 2 1 103 7 1 61 chain 14929 chrX 155270560 + 96742629 96742933 L1MB1 2102 - 390 655 141544 72 9 8 19 49 16 10 15 8 35 1 0 17 1 4 76 chain 547684 chrX 155270560 + 96764509 96770524 L1PA3long 6157 - 0 6147 1743 1863 0 2 1120 0 1 2267 8 136 615 0 1 142 chain 4174 chrX 155270560 + 96804711 96804765 L1MC4 1079 - 193 247 204923 54 chain 4427 chrX 155270560 + 96804767 96804859 L1MC4 1079 + 699 800 201616 45 29 38 18 chain 544608 chrX 155270560 + 96833176 96839187 L1PA3long 6157 - 5 6147 2125 1267 0 4 3027 4 0 323 0 1 626 0 20 6 0 108 405 0 1 210 0 1 143 chain 30584 chrX 155270560 + 96898071 96898461 L1P4 1494 + 831 1220 83234 248 1 0 141 chain 106744 chrX 155270560 + 96903667 96904847 L1PA3long 6157 + 4983 6157 35047 317 1 0 686 5 0 171 chain 40325 chrX 155270560 + 96906647 96907113 L1PA5 6144 - 5 471 68844 466 chain 4194 chrX 155270560 + 96932051 96932099 L1MC4 1079 - 815 863 204630 48 chain 120546 chrX 155270560 + 96965441 96967526 L1PA16 3655 + 1762 3587 30859 33 1 0 104 0 1 97 22 3 129 1 73 7 0 3 28 358 51 21 11 7 15 0 1 127 0 9 7 16 7 63 0 3 122 9 15 210 1 0 24 1 0 282 1 0 88 2 0 123 14 16 92 9 0 55 3 0 9 chain 5546 chrX 155270560 + 96967835 96967897 MER5A 189 - 126 188 189603 62 chain 87496 chrX 155270560 + 96978251 96979295 L1PA7 6471 - 4 1049 40566 240 1 0 595 6 8 202 chain 24517 chrX 155270560 + 96979297 96979705 L1MA2 4263 - 216 601 107460 60 37 35 142 39 18 130 chain 20692 chrX 155270560 + 96989163 96989548 THE1D 372 + 2 370 124996 89 0 1 31 0 1 45 78 66 37 15 9 39 0 1 17 3 1 31 chain 25212 chrX 155270560 + 96997204 96997517 THE1C 375 + 0 314 103678 139 0 1 174 chain 120619 chrX 155270560 + 96997549 96999101 THE1C-int 1605 + 0 1605 30836 14 2 1 108 0 54 150 0 6 107 5 12 150 7 6 96 1 0 50 13 7 407 4 0 312 5 4 121 chain 14435 chrX 155270560 + 97048616 97048768 L1PA2 6032 + 5874 6026 143089 152 chain 5619 chrX 155270560 + 97052741 97052901 MER34A 573 + 109 258 188879 6 1 0 31 73 63 49 chain 527735 chrX 155270560 + 97052915 97059028 L1PA5 6144 - 3 6144 4427 498 0 1 270 0 2 761 5 0 1362 0 4 1829 1 6 164 0 1 73 9 0 91 1 4 630 9 8 236 1 2 31 3 15 18 1 15 120 chain 3535 chrX 155270560 + 97073068 97073111 MLT1D 503 + 4 47 214783 43 chain 9189 chrX 155270560 + 97096552 97096818 HERV-Fc2_LTR 353 + 61 318 164614 40 125 116 101 chain 190220 chrX 155270560 + 97096855 97101498 HERV-Fc2-int 3928 + 0 3928 20024 39 930 228 1121 3 0 111 137 137 589 149 156 7 7 0 552 316 310 36 1 0 191 220 217 234 chain 9127 chrX 155270560 + 97104115 97104385 HERV-Fc2_LTR 353 + 56 318 164935 4 0 1 40 125 116 101 chain 5061 chrX 155270560 + 97125697 97125762 LTR16E1 515 - 427 491 194527 25 1 0 39 chain 4388 chrX 155270560 + 97131522 97131620 MER97c 529 - 413 510 202105 15 25 26 34 2 0 22 chain 201962 chrX 155270560 + 97146142 97148943 L1PB1 5432 - 58 2791 19067 4 1 0 13 4 0 11 2 0 14 1 0 5 38 25 6 1 0 12 5 4 39 2 0 5 1 0 14 3 2 52 2 0 9 5 1 14 1 0 10 1 0 20 65 11 291 1 2 188 0 1 8 0 4 339 3 8 95 4 0 443 4 7 48 0 14 77 1 0 74 11 12 5 1 0 145 0 1 318 21 16 165 2 0 7 5 10 5 2 0 105 0 1 73 chain 333392 chrX 155270560 + 97169959 97174371 L1P3 4156 + 0 4139 12071 17 0 1 233 1 0 69 15 13 395 0 8 466 5 9 179 1 4 187 0 1 12 0 3 132 22 21 89 1 0 309 290 0 197 0 1 92 0 2 189 0 2 1476 2 0 7 2 1 24 chain 521917 chrX 155270560 + 97176048 97182198 L1PA6 6164 + 1 6160 4969 234 0 2 279 2 4 47 1 0 1758 4 0 468 0 4 393 0 2 489 3 4 648 1 0 986 0 4 837 chain 58554 chrX 155270560 + 97182309 97182984 L1PA7 6471 + 5793 6469 53672 531 0 1 144 chain 5161 chrX 155270560 + 97183525 97183581 MIR 256 + 37 93 193432 56 chain 83827 chrX 155270560 + 97218062 97219084 L1PA8A 6298 - 14 1034 41972 283 2 1 118 0 2 147 1 4 6 3 0 10 1 2 258 4 0 189 chain 4915 chrX 155270560 + 97222083 97222154 MADE1 96 - 9 96 196105 38 5 21 28 chain 2847 chrX 155270560 + 97226077 97226107 MIRb 242 + 102 132 227882 30 chain 109369 chrX 155270560 + 97245653 97247286 THE1C-int 1605 - 6 1578 34352 66 43 0 11 0 43 179 0 3 536 15 24 23 3 0 5 14 17 188 4 7 5 3 0 36 102 28 298 1 0 67 11 13 23 chain 24382 chrX 155270560 + 97251180 97251492 AluY 311 + 0 307 108186 66 8 1 64 1 3 173 chain 12096 chrX 155270560 + 97264744 97265084 THE1D 372 + 0 338 151813 37 172 171 17 1 0 113 chain 91305 chrX 155270560 + 97269348 97270756 L1PA16 3655 - 125 1543 39193 210 2 0 13 56 54 33 31 26 118 0 1 77 0 3 78 1 0 219 1 0 10 12 11 79 8 7 106 7 14 46 11 20 165 0 1 4 1 0 43 22 25 55 chain 23952 chrX 155270560 + 97275300 97275644 L1M1 2793 - 133 487 110603 32 3 1 49 0 5 76 5 7 13 2 4 33 1 0 102 0 4 28 chain 18946 chrX 155270560 + 97279414 97279767 THE1B 368 + 0 356 130240 111 0 3 5 2 0 50 71 74 63 17 16 34 chain 38048 chrX 155270560 + 97288031 97288498 L1PA7 6471 + 5996 6464 72060 317 0 1 9 0 1 4 1 0 136 chain 520649 chrX 155270560 + 97298391 97304810 L1PA7 6471 - 5 6468 5089 7 2 0 19 33 1 9 0 36 78 7 8 684 0 3 205 0 4 66 0 1 351 0 10 458 0 4 71 0 13 941 2 0 785 11 12 65 0 3 30 0 1 7 0 1 270 1 0 47 3 4 18 1 0 682 1 0 49 0 1 248 6 7 22 0 1 40 0 1 51 0 1 4 1 0 430 21 19 42 0 1 233 9 13 5 3 0 401 chain 6729 chrX 155270560 + 97334818 97334906 UCON29 292 + 105 192 179485 54 3 0 6 0 2 25 chain 7479 chrX 155270560 + 97341365 97341450 THE1C-int 1605 - 12 97 174283 85 chain 4752 chrX 155270560 + 97341450 97341528 THE1C 375 - 306 375 195871 17 16 7 45 chain 37080 chrX 155270560 + 97348128 97348560 L1PA7 6471 + 6032 6469 73416 420 1 6 11 chain 18135 chrX 155270560 + 97360217 97360440 L1MA2 4263 - 681 904 132504 223 chain 275425 chrX 155270560 + 97380664 97383938 L1PA7 6471 - 2 3281 14903 148 0 6 3 6 0 173 0 1 163 1 0 345 6 8 79 1 0 225 0 1 370 1 0 267 0 4 906 0 1 40 1 0 539 chain 80613 chrX 155270560 + 97385894 97387054 L1PA16 3655 - 63 1241 43336 15 3 0 6 0 1 139 1 3 135 2 0 38 0 5 49 4 7 99 6 7 6 1 0 73 5 8 69 13 12 22 1 0 46 4 0 6 0 16 154 2 1 225 6 8 5 2 0 23 chain 88385 chrX 155270560 + 97390856 97391955 L1PA8 5853 - 0 1125 40227 43 0 4 46 6 27 40 2 0 14 5 4 65 2 0 48 1 0 38 0 1 436 1 0 5 13 18 55 0 2 279 chain 116149 chrX 155270560 + 97392117 97393725 L1PB2 3958 + 2219 3818 32397 267 1 0 4 5 3 245 2 3 79 1 0 27 0 1 76 1 0 122 1 3 75 5 8 177 2 0 13 0 1 5 0 1 25 0 1 6 1 0 11 2 0 53 0 1 12 2 0 13 2 0 89 2 0 76 2 1 64 2 1 64 5 4 24 2 1 43 chain 18720 chrX 155270560 + 97400106 97400342 L1PA16 3655 - 89 325 130903 236 chain 56503 chrX 155270560 + 97402470 97403245 L1P3 4156 + 3395 4139 54850 207 0 1 4 1 0 93 11 0 86 1 2 38 18 0 281 2 0 7 2 1 24 chain 10406 chrX 155270560 + 97405089 97405217 L1P3 4156 + 3627 3755 158658 128 chain 101660 chrX 155270560 + 97409401 97410959 L1PB1 5432 - 12 1433 36352 15 2 1 9 0 3 22 1 0 24 2 0 14 8 5 19 16 6 6 1 0 16 1 0 44 1 0 15 2 1 53 2 0 9 6 2 8 2 1 9 1 0 22 132 16 81 7 9 304 1 3 82 10 12 63 2 1 546 chain 10511 chrX 155270560 + 97410998 97411122 L1PA15 4387 + 2160 2284 158203 124 chain 38609 chrX 155270560 + 97452889 97453392 LTR12 884 + 0 873 71281 25 1 0 30 0 41 41 0 41 155 0 49 189 5 245 57 chain 536221 chrX 155270560 + 97489870 97496300 L1PA7 6471 - 2 6471 3416 14 0 6 456 0 3 275 0 3 96 0 2 104 0 3 833 0 1 4 0 7 660 1 0 26 0 1 398 0 4 16 4 8 131 0 1 209 0 2 307 6 10 255 2 4 154 6 0 6 13 19 2039 3 0 60 0 1 5 1 0 346 chain 7913 chrX 155270560 + 97505357 97505500 L1MA8 2339 - 74 209 171562 8 1 0 24 2 0 37 6 0 27 11 12 27 chain 78626 chrX 155270560 + 97505561 97506490 L1PA7 6471 - 1 938 44212 11 0 4 274 1 0 24 0 1 539 0 3 66 0 1 14 chain 88264 chrX 155270560 + 97524078 97525165 MER11B 1079 + 0 1071 40275 259 3 0 336 1 0 153 0 1 23 14 0 281 5 6 12 chain 23119 chrX 155270560 + 97532745 97533046 AluSp 311 + 2 296 115044 130 14 12 144 5 0 8 chain 29126 chrX 155270560 + 97543785 97544245 LTR7B 505 + 0 503 88430 105 1 11 59 17 79 26 29 0 38 0 1 43 1 0 26 0 1 52 14 13 49 chain 27440 chrX 155270560 + 97544586 97545046 LTR29 598 - 0 460 94848 15 23 24 244 7 6 65 55 54 26 1 2 24 chain 540064 chrX 155270560 + 97555341 97561359 L1PA3long 6157 + 1 6157 2808 151 11 12 398 0 1 213 0 128 237 0 4 571 1 0 992 0 3 465 0 1 1068 0 2 998 1 0 912 chain 52574 chrX 155270560 + 97575976 97576646 L1PA10 4194 - 44 710 57251 21 21 20 236 3 0 108 1 0 4 0 1 276 chain 13930 chrX 155270560 + 97586192 97586525 L1PB1 5432 + 5120 5422 144821 18 1 0 4 3 2 13 17 11 52 2 1 10 6 5 44 1 0 16 1 0 4 2 0 11 12 3 12 30 25 19 1 0 21 1 0 13 1 0 18 chain 4763 chrX 155270560 + 97608145 97608241 MER3 215 + 68 182 197774 38 22 34 16 1 7 19 chain 52789 chrX 155270560 + 97613378 97613969 L1P1 4361 + 3728 4317 57142 423 1 0 154 1 0 12 chain 4558 chrX 155270560 + 97636450 97636565 MER92B 628 + 0 114 200132 42 47 46 26 chain 3067 chrX 155270560 + 97636631 97636666 MLT2B2 565 - 4 39 223631 35 chain 35278 chrX 155270560 + 97639638 97640076 MER4A1 472 - 15 472 75821 16 1 0 188 5 26 178 2 1 48 chain 244494 chrX 155270560 + 97648892 97651816 L1PA7 6471 + 3531 6453 16530 19 0 4 57 4 5 554 7 8 234 15 0 73 0 1 88 1 0 4 0 1 92 0 4 280 1 0 666 0 3 829 chain 3663 chrX 155270560 + 97654958 97655002 MLT1E2 623 + 69 113 212529 44 chain 20117 chrX 155270560 + 97657243 97657476 AluY 311 + 73 305 126776 52 2 1 179 chain 260615 chrX 155270560 + 97669994 97672972 L1PA4 6152 + 0 6151 15661 1609 0 1 154 0 16 62 0 3155 417 5 0 30 0 6 701 chain 556629 chrX 155270560 + 97679323 97685355 L1PA2 6032 - 0 6032 657 6032 chain 19500 chrX 155270560 + 97692740 97693344 L1MA1 4479 - 328 3873 128654 9 1 0 35 2 0 27 13 17 89 223 60 34 12 3116 19 3 2 137 chain 40551 chrX 155270560 + 97763108 97763676 MER11A 1151 - 0 1143 68507 170 0 1 8 1 0 55 0 9 24 18 0 11 0 49 15 0 446 69 4 0 64 1 0 64 4 98 60 chain 54840 chrX 155270560 + 97777505 97778175 PABL_B 668 - 0 668 55808 82 2 0 586 chain 39252 chrX 155270560 + 97779258 97779695 LTR7 482 - 15 482 70386 172 0 31 213 1 0 51 chain 299845 chrX 155270560 + 97780956 97784615 HERVH-int 3825 - 0 3825 13435 487 8 218 1395 3 0 9 4 31 231 0 2 673 2 1 24 0 1 23 2 1 7 0 20 71 4 1 12 1 0 14 28 0 24 1 0 10 65 0 38 5 0 305 4 15 153 0 3 56 chain 5479 chrX 155270560 + 97783990 97784054 HERVH-int 3825 - 3255 3375 179856 30 0 56 34 chain 40044 chrX 155270560 + 97784617 97785068 LTR7 482 - 0 482 69253 188 2 33 261 chain 4077 chrX 155270560 + 97789105 97789169 L1MA1 4479 + 346 409 206228 37 6 5 21 chain 12530 chrX 155270560 + 97789301 97789479 L1MA1 4479 + 346 527 150115 37 6 5 30 0 4 105 chain 27946 chrX 155270560 + 97792404 97792852 MLT2A2 560 + 0 560 93185 144 85 88 67 0 2 8 0 107 144 chain 57426 chrX 155270560 + 97804536 97805494 L1PREC2 3366 - 360 1269 54276 35 22 8 11 4 1 23 9 7 11 77 60 43 18 17 36 1 0 312 20 13 105 9 5 222 chain 488057 chrX 155270560 + 97815099 97820701 L1PA4 6152 - 9 6142 7439 104 1 2 1521 5 0 1098 0 1 234 1 0 600 0 4 177 0 1 459 0 2 141 0 2 679 0 1 494 0 525 88 chain 14651 chrX 155270560 + 97837500 97837685 LTR60 593 - 357 532 142422 82 10 0 93 chain 74265 chrX 155270560 + 97843002 97843928 MER57-int 2662 - 1642 2563 46376 90 0 1 112 7 0 20 0 1 432 1 0 5 0 1 15 0 1 29 2 0 170 0 2 33 1 0 9 chain 154982 chrX 155270560 + 97849000 97850701 L1PA3long 6157 - 2 1703 23982 1701 chain 11325 chrX 155270560 + 97856903 97857048 L1PB4 2604 - 61 206 154982 145 chain 36965 chrX 155270560 + 97895715 97896147 L1PA7 6471 + 6022 6454 73561 290 1 0 77 0 1 64 chain 32898 chrX 155270560 + 97910058 97910519 MLT2A1 477 + 0 477 79375 169 4 1 34 0 1 177 1 3 10 33 49 33 chain 454246 chrX 155270560 + 97910519 97916141 HERVL-int 5654 + 0 5654 8605 81 0 2 783 1 6 9 3 4 51 12 10 29 0 2 94 0 1 46 1 0 60 0 2 44 1 0 497 0 2 330 1 0 298 1 0 1020 0 1 331 0 1 205 0 4 293 0 3 7 0 1 350 1 0 575 0 6 56 0 1 17 1 0 192 0 8 232 chain 31904 chrX 155270560 + 97916141 97916586 MLT2A1 477 + 0 477 81003 165 8 5 34 0 1 180 23 57 35 chain 10234 chrX 155270560 + 97917958 97918198 MER47B 469 - 79 435 159455 66 4 0 32 3 0 6 80 203 49 chain 216083 chrX 155270560 + 97923294 97925663 L1PA3long 6157 + 3781 6155 18109 660 0 1 862 0 4 847 chain 31717 chrX 155270560 + 97942069 97942444 L1PA7 6471 - 10 385 81302 375 chain 558589 chrX 155270560 + 97942503 97948512 L1PA2 6032 - 11 6020 445 6009 chain 336425 chrX 155270560 + 97950462 97954571 L1P3 4156 - 17 4156 11987 24 2 1 9 2 0 144 0 39 428 2 1 96 0 1 675 0 1 82 0 1 245 8 0 360 1 0 431 0 3 30 0 1 203 0 1 962 2 0 79 1 0 70 2 1 251 chain 24344 chrX 155270560 + 97983451 97983784 THE1B 368 - 12 361 108399 162 6 8 14 1 0 104 9 24 37 chain 25727 chrX 155270560 + 98018420 98018760 L1PA7 6471 - 12 373 101184 199 0 8 39 1 0 6 4 0 7 4 21 47 0 1 33 chain 15856 chrX 155270560 + 98025700 98025931 MER30 238 - 0 238 138784 45 4 1 58 2 0 10 4 0 7 4 20 97 chain 24558 chrX 155270560 + 98038022 98038337 AluY 311 + 0 311 107200 123 2 0 9 6 7 20 6 2 98 0 1 51 chain 163613 chrX 155270560 + 98072561 98074359 L1PA3long 6157 - 0 1802 22860 128 1 4 206 0 1 1463 chain 118881 chrX 155270560 + 98074359 98075715 L1P2 5180 + 2081 3437 31461 1356 chain 27444 chrX 155270560 + 98104455 98104832 MLT2A1 477 - 86 477 94836 68 1 0 103 5 15 30 3 7 26 1 2 140 chain 398348 chrX 155270560 + 98104841 98109769 HERVL-int 5654 - 9 5654 10160 125 4 0 83 0 1 127 6 10 74 2 0 220 19 20 40 0 2 33 0 1 4 1 0 408 0 5 836 6 0 470 6 1 513 0 1 20 0 12 250 1 0 4 0 1 479 0 2 84 0 1 188 1 2 465 6 7 63 0 703 390 chain 8582 chrX 155270560 + 98119926 98120782 MER50 708 + 0 696 167832 47 724 563 15 0 1 70 chain 435741 chrX 155270560 + 98135663 98141866 L1PA8A 6298 + 65 6273 9174 5 2 0 7 6 0 23 3 0 19 19 10 18 2 1 9 2 1 18 6 4 9 2 0 11 2 0 8 1 0 6 37 32 12 5 0 8 2 0 31 26 25 8 8 0 77 2 0 16 1 0 8 6 4 11 0 12 57 1 0 293 4 0 12 5 19 147 1 2 77 8 0 46 0 3 18 6 4 93 2 3 34 0 3 5 11 12 435 1 2 244 21 24 367 6 5 78 9 11 32 2 17 31 0 2 88 17 13 60 1 0 4 9 11 259 0 4 133 0 7 60 0 1 198 2 0 138 0 230 13 235 8 23 11 12 75 0 1 953 10 8 56 1 4 161 1 2 268 0 1 164 2 6 85 21 20 673 chain 34636 chrX 155270560 + 98157212 98157651 MER4A1 472 - 14 472 76710 160 4 0 40 1 22 64 0 2 170 chain 144037 chrX 155270560 + 98161590 98163564 L1PA11 4918 - 355 2316 25471 9 1 0 12 16 12 10 8 3 9 4 0 19 1 0 14 2 0 68 2 0 7 17 16 56 5 0 278 0 1 566 6 5 151 1 0 4 10 21 315 0 1 225 8 9 150 chain 39344 chrX 155270560 + 98180640 98181127 L1PA8A 6298 + 4336 4825 70262 11 0 1 92 5 6 379 chain 118490 chrX 155270560 + 98181129 98182567 L1PA8A 6298 + 4825 6289 31621 518 0 5 140 0 3 74 7 8 4 1 0 438 1 18 157 0 1 98 chain 20759 chrX 155270560 + 98247104 98247463 THE1B 368 - 3 368 124762 4 0 1 107 30 29 11 18 23 21 1 0 37 19 20 89 0 1 22 chain 22849 chrX 155270560 + 98260128 98260489 THE1B 368 - 0 368 116349 10 0 1 66 3 0 42 55 65 18 1 0 166 chain 27015 chrX 155270560 + 98307751 98308103 THE1A 353 + 0 353 96233 68 0 3 13 2 1 25 1 0 119 0 1 4 1 0 119 chain 118226 chrX 155270560 + 98308103 98309624 THE1A-int 1579 + 0 1557 31720 123 0 10 76 0 1 151 5 6 49 0 1 5 0 2 80 3 0 5 0 3 158 9 16 230 6 21 292 1 0 328 chain 38011 chrX 155270560 + 98329602 98330217 L1PB1 5432 + 4836 5427 72117 10 0 8 249 3 0 10 2 1 27 0 3 13 6 2 9 2 0 51 3 2 10 6 5 45 2 1 14 14 2 29 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 37300 chrX 155270560 + 98332748 98333192 L1PA6 6164 - 2 445 73077 13 3 0 32 0 1 88 0 1 308 chain 37292 chrX 155270560 + 98361906 98362354 L1PA6 6164 + 5707 6156 73091 295 1 2 152 chain 301973 chrX 155270560 + 98415934 98419782 HERVH-int 3825 - 0 3825 13324 508 0 23 457 74 73 1048 4 31 230 1 0 14 20 10 652 0 1 76 1 0 26 126 0 20 29 25 13 1 71 12 1 0 45 0 1 5 2 1 107 0 1 42 1 0 333 chain 18538 chrX 155270560 + 98429541 98429769 THE1A 353 - 0 228 131396 228 chain 19474 chrX 155270560 + 98429819 98430051 THE1-int 844 + 406 638 128736 232 chain 30436 chrX 155270560 + 98433147 98433465 AluYb8 318 - 0 318 83559 318 chain 115131 chrX 155270560 + 98455413 98456978 THE1B-int 1605 + 0 1605 32745 432 3 28 141 0 1 103 6 7 28 57 57 112 0 10 37 11 12 35 16 18 351 4 5 52 1 0 176 chain 547122 chrX 155270560 + 98489631 98495758 L1PA4 6152 + 20 6151 1817 1014 1 0 26 0 2 393 1 0 858 1 0 1376 1 0 976 1 0 391 0 1 245 1 5 584 0 2 258 chain 29227 chrX 155270560 + 98518314 98518682 MLT2A1 477 - 108 476 87926 122 0 1 39 4 6 31 4 1 168 chain 386429 chrX 155270560 + 98521358 98526757 L1PB1 5432 - 16 5378 10564 12 6 5 8 1 0 18 8 7 11 12 10 13 1 0 4 1 0 3 1 0 28 14 1 16 1 0 38 6 5 16 9 8 46 2 0 9 4 0 12 1 0 12 46 31 258 34 33 25 0 1 156 4 0 249 0 1 347 1 0 301 2 5 41 16 15 532 1 13 255 5 31 259 0 1 48 8 9 28 8 0 102 14 0 15 0 4 114 2 1 4 0 1 284 0 1 195 3 1 221 6 7 35 0 2 94 12 11 8 1 0 9 1 0 89 8 19 52 0 1 5 1 0 213 39 16 291 0 1 41 9 8 91 0 2 309 0 1 4 1 0 189 chain 176387 chrX 155270560 + 98541244 98543194 L1PA3long 6157 - 0 1931 21317 512 2 0 1003 22 5 411 chain 15432 chrX 155270560 + 98568726 98568926 L1PA4 6152 + 5957 6141 140098 138 18 2 44 chain 9146 chrX 155270560 + 98572849 98572968 THE1B-int 1605 + 35 561 164830 105 0 407 14 chain 151755 chrX 155270560 + 98577608 98579544 L1PA8 5853 + 3903 5849 24369 312 4 3 187 0 7 75 0 1 251 1 0 270 0 6 225 0 3 276 8 9 36 1 0 32 18 16 67 10 9 52 2 1 19 1 0 89 chain 181666 chrX 155270560 + 98582403 98584928 MER4-int 2692 + 14 2533 20827 22 2 0 6 7 8 37 11 5 7 2 0 9 0 2 95 0 1 138 4 6 827 0 1 8 7 10 18 1 0 36 1 0 145 0 16 5 2 1 48 6 12 110 0 4 167 0 1 11 13 15 16 32 0 89 0 2 9 1 0 34 8 7 8 0 1 67 1 5 239 0 2 11 8 0 10 2 3 245 chain 14319 chrX 155270560 + 98593076 98593230 L1PA3long 6157 - 0 154 143500 154 chain 60430 chrX 155270560 + 98593230 98593890 L1P1 4361 + 2768 3428 52621 660 chain 33992 chrX 155270560 + 98601425 98601803 L1PA5 6144 + 5531 5910 77628 71 0 1 307 chain 89882 chrX 155270560 + 98610676 98611898 L1PA10 4194 + 2824 4113 39690 199 7 6 94 7 1 5 0 1 427 0 1 125 1 2 83 25 96 249 chain 92992 chrX 155270560 + 98626231 98627575 LTR12C 1709 - 0 1709 38659 84 1 0 124 13 0 195 8 9 66 14 7 31 0 207 119 0 118 138 1 2 38 0 1 4 1 0 74 45 37 76 0 43 40 4 5 199 19 33 17 9 18 24 chain 72582 chrX 155270560 + 98656742 98657532 L1PA3long 6157 - 0 790 47229 790 chain 123545 chrX 155270560 + 98657532 98658877 L1PA3long 6157 + 4016 5361 29862 1345 chain 4772 chrX 155270560 + 98701410 98701462 L1MC1 2226 - 885 937 197664 52 chain 46014 chrX 155270560 + 98702373 98702980 MER41B 635 + 0 635 62031 92 1 0 13 0 24 58 0 1 5 1 0 357 10 15 70 chain 46634 chrX 155270560 + 98740488 98741002 L1PA3long 6157 - 1 514 61513 4 1 0 509 chain 114867 chrX 155270560 + 98741002 98742277 L1PA3long 6157 + 4369 5641 32829 524 15 13 111 1 0 624 chain 322695 chrX 155270560 + 98765020 98769176 L1PA8 5853 - 1 4181 12496 24 3 12 51 6 5 19 2 1 52 1 0 9 2 1 70 2 0 46 1 0 30 16 18 366 0 3 87 0 1 4 1 0 19 1 0 25 5 4 308 0 5 304 0 1 177 1 0 900 0 1 200 17 14 157 0 4 18 3 2 32 14 19 185 0 1 471 0 2 58 1 2 7 0 4 35 0 1 226 1 0 54 0 3 8 3 0 134 chain 55287 chrX 155270560 + 98783869 98784674 L1PA11 4918 + 3576 4464 55534 90 1 0 160 23 126 152 4 5 157 1 3 59 6 0 65 2 1 12 3 0 6 12 0 52 chain 12912 chrX 155270560 + 98806079 98806256 L1PA7 6471 - 3 178 148585 19 1 0 49 9 8 99 chain 13750 chrX 155270560 + 98806263 98806448 L1PA7 6471 + 6118 6290 145439 129 13 0 43 chain 271774 chrX 155270560 + 98821531 98824903 L1PA7 6471 - 1 3377 15095 417 0 1 431 1 4 1038 0 1 4 1 0 509 14 13 50 1 0 454 5 9 16 7 4 10 6 7 143 1 0 5 1 2 258 chain 53643 chrX 155270560 + 98824903 98825591 L1P3 4156 - 623 1317 56184 17 0 3 500 4 7 167 chain 162156 chrX 155270560 + 98837212 98839567 L1PB1 5432 - 16 2292 23040 12 1 0 13 1 0 21 1 0 24 17 14 5 2 0 19 24 12 14 2 1 44 1 0 16 2 1 50 3 1 10 5 1 12 1 0 6 4 3 17 58 22 239 5 0 32 10 6 192 7 4 25 1 2 279 0 5 293 13 6 112 0 7 164 9 5 96 3 1 424 1 0 33 0 1 32 chain 162472 chrX 155270560 + 98846356 98848702 L1PB1 5432 + 3140 5422 23004 34 0 1 451 1 0 101 9 5 197 0 3 60 11 10 13 7 6 293 0 5 279 1 2 25 7 4 192 10 6 30 5 0 241 46 22 17 4 3 6 1 0 12 5 1 10 3 1 50 2 1 16 1 0 44 2 1 14 26 14 17 2 0 5 19 16 22 1 0 22 1 0 12 1 0 18 chain 426685 chrX 155270560 + 98848997 98853742 L1PA3long 6157 - 0 4757 9379 55 0 8 780 0 4 392 0 1 11 15 13 252 1 2 3239 chain 71467 chrX 155270560 + 98872535 98873506 L1PA8 5853 - 0 972 47708 22 0 6 65 1 0 16 1 0 45 6 5 15 1 0 71 2 0 38 0 1 5 1 0 285 1 0 180 0 3 39 0 1 43 0 2 8 12 8 114 chain 62249 chrX 155270560 + 98873506 98874256 L1PA8 5853 + 4147 4890 51777 67 7 0 7 0 1 444 1 0 224 chain 5344 chrX 155270560 + 98879538 98879604 L1PA7 6471 - 5 69 191602 7 2 0 57 chain 2738 chrX 155270560 + 98885324 98885359 MSTA-int 1630 + 1504 1540 229652 7 0 1 28 chain 227188 chrX 155270560 + 98898916 98902010 L1PA8 5853 - 0 3079 17476 11 0 1 81 1 0 44 0 6 22 1 0 9 1 0 71 2 0 44 1 0 90 3 1 464 2 0 3 1 0 271 0 1 21 6 5 336 0 1 31 1 2 31 0 1 4 3 2 73 17 12 263 0 9 44 1 2 26 12 0 14 0 4 145 7 18 147 0 2 5 3 1 317 23 0 47 1 4 286 16 15 92 chain 26778 chrX 155270560 + 98902022 98902342 L1PA7 6471 - 10 330 97055 320 chain 42046 chrX 155270560 + 98904352 98904900 MLT2A2 560 - 0 560 66566 142 1 12 69 1 2 60 0 3 5 3 0 267 chain 32883 chrX 155270560 + 98905730 98906124 L1PA7 6471 - 2 395 79391 12 1 0 381 chain 14596 chrX 155270560 + 98910532 98910693 L1PA4 6152 + 5981 6143 142607 128 0 1 33 chain 4239 chrX 155270560 + 98913584 98913629 L1PA4 6152 + 6097 6142 204019 45 chain 22076 chrX 155270560 + 98924638 98924906 L1PA8 5853 - 1362 1630 119554 268 chain 102558 chrX 155270560 + 98924906 98926263 L1PA8 5853 + 4490 5853 36118 68 33 33 183 4 0 235 0 2 107 1 0 271 0 10 115 1 0 50 1 0 29 0 5 11 2 0 58 0 1 10 12 10 10 1 2 40 2 1 19 1 0 93 chain 7375 chrX 155270560 + 98927185 98927359 L1PREC2 3366 - 307 458 174942 11 2 0 38 12 10 29 22 8 11 3 0 30 4 2 12 chain 44104 chrX 155270560 + 98928021 98928544 MER9a2 513 - 0 513 64082 172 1 0 24 13 4 313 chain 90482 chrX 155270560 + 98929885 98931108 L1PA8A 6298 - 563 1783 39475 12 0 10 130 0 2 11 0 2 78 2 1 589 8 11 67 25 13 50 7 0 244 chain 43656 chrX 155270560 + 98931108 98931628 L1PA8A 6298 + 5745 6291 64620 388 0 25 26 1 0 7 0 2 98 chain 21356 chrX 155270560 + 98936926 98937177 L1PA7 6471 + 6210 6462 122663 243 0 1 8 chain 46688 chrX 155270560 + 98969749 98970366 THE1B-int 1605 - 12 641 61469 35 0 1 33 0 5 114 3 4 248 18 22 62 0 1 104 chain 66620 chrX 155270560 + 98981584 98982407 L1PB1 5432 - 712 1537 49821 80 0 1 5 0 1 4 0 1 424 2 1 308 chain 46032 chrX 155270560 + 98982407 98983268 L1PB1 5432 + 4695 5409 61772 72 4 5 32 1 0 81 1 0 217 0 3 9 111 0 24 1 0 9 1 0 9 6 2 9 2 0 52 1 0 18 1 0 42 2 1 16 3 0 8 20 4 19 24 19 24 1 0 21 1 0 13 1 0 5 chain 35029 chrX 155270560 + 99001199 99001750 L1PA16 3655 - 174 712 76147 191 2 0 59 34 33 22 8 0 189 27 25 19 chain 8242 chrX 155270560 + 99005136 99005238 THE1A 353 + 250 353 169725 78 0 1 24 chain 22449 chrX 155270560 + 99012437 99012718 L1PREC2 3366 - 1608 1890 118257 60 0 1 221 chain 87945 chrX 155270560 + 99048331 99049418 MER11B 1079 + 0 1079 40397 225 0 5 29 3 0 66 2 1 258 12 11 174 6 0 149 1 0 146 5 4 11 chain 54011 chrX 155270560 + 99049500 99050361 L1PB2 3958 - 122 974 56354 61 1 0 22 12 9 18 0 3 34 9 8 64 1 0 40 0 6 9 23 17 93 4 0 14 2 0 55 5 6 6 0 4 4 1 0 56 2 0 72 1 0 16 24 23 212 chain 513466 chrX 155270560 + 99060560 99066342 L1PA5 6144 + 359 6139 5838 1073 6 4 272 0 1 1468 0 1 2109 1 0 606 1 0 246 chain 38911 chrX 155270560 + 99069327 99069798 L1PA7 6471 - 7 478 70851 139 5 4 159 0 1 168 chain 69134 chrX 155270560 + 99071513 99072289 L1PA3long 6157 + 5380 6155 48746 80 4 3 692 chain 246019 chrX 155270560 + 99082424 99085857 L1PB1 5432 - 19 3404 16447 11 1 0 11 1 0 21 1 0 24 24 19 19 19 8 4 1 0 15 1 0 43 20 18 53 30 23 6 1 0 35 1 0 50 19 19 184 8 0 228 0 1 41 3 0 60 0 3 5 3 0 14 12 13 49 0 1 7 2 0 472 1 0 219 29 14 139 0 1 4 12 11 11 10 18 206 1 4 479 0 1 7 1 3 344 3 0 165 1 0 68 6 7 10 7 6 211 chain 116433 chrX 155270560 + 99095595 99096935 L1PA5 6144 + 3689 5040 32300 547 1 0 138 0 9 64 0 3 590 chain 94000 chrX 155270560 + 99096936 99098023 L1PA5 6144 + 5040 6132 38350 935 0 1 13 4 8 135 chain 25115 chrX 155270560 + 99100650 99100939 AluY 311 + 1 300 104196 15 0 12 105 2 0 167 chain 5611 chrX 155270560 + 99102553 99102645 L1MA3 4352 + 4223 4311 188969 35 2 0 24 1 0 4 0 3 6 4 0 16 chain 85605 chrX 155270560 + 99118393 99119356 L1P1 4361 - 563 1528 41270 193 1 0 357 0 3 412 chain 160025 chrX 155270560 + 99119356 99121118 L1PA3long 6157 + 4395 6157 23337 1762 chain 27973 chrX 155270560 + 99121696 99122073 THE1C 375 + 0 375 93103 178 3 0 6 1 3 163 1 0 25 chain 151028 chrX 155270560 + 99132271 99134079 L1PA7 6471 + 4660 6468 24473 276 0 1 366 4 0 311 0 3 851 chain 40135 chrX 155270560 + 99155998 99159960 LTR8 732 - 0 709 69130 74 3305 0 102 32 29 30 0 9 140 16 43 18 7 7 80 1 5 38 0 6 112 0 9 7 chain 185246 chrX 155270560 + 99181785 99183981 L1PA7 6471 + 4266 6461 20475 291 1 3 412 8 7 645 2 0 837 chain 12884 chrX 155270560 + 99195487 99195637 L1PA4 6152 + 6002 6152 148688 150 chain 50373 chrX 155270560 + 99197672 99198253 L1PA7 6471 + 5888 6461 58730 353 8 0 220 chain 37958 chrX 155270560 + 99204425 99204859 L1PA7 6471 - 68 505 72197 333 0 3 101 chain 37434 chrX 155270560 + 99219450 99219877 L1PA4 6152 + 5715 6143 72918 323 0 1 104 chain 28798 chrX 155270560 + 99270176 99270547 THE1B 368 + 0 368 89904 172 2 1 27 2 0 168 chain 29333 chrX 155270560 + 99272123 99272494 THE1B 368 + 0 368 87384 173 1 0 27 2 0 168 chain 92650 chrX 155270560 + 99298699 99299726 L1PA4 6152 - 0 1029 38771 9 0 1 103 0 1 915 chain 551997 chrX 155270560 + 99305782 99311923 L1PA4 6152 + 6 6152 1192 1054 0 2 1369 0 4 857 1 0 2860 chain 3397 chrX 155270560 + 99331717 99331755 MLT2B4 540 - 0 38 217141 38 chain 4871 chrX 155270560 + 99355454 99355698 L1MD3 1191 + 917 1139 196577 31 168 146 45 chain 224214 chrX 155270560 + 99364399 99367458 L1PA7 6471 - 5 2757 17638 7 3 0 318 5 6 25 0 2 6 3 1 156 0 4 124 7 5 195 0 3 11 7 11 637 1 0 129 0 1 115 315 0 172 0 1 823 chain 15521 chrX 155270560 + 99369831 99370030 L1PA6 6164 + 5955 6157 139826 47 6 9 146 chain 550686 chrX 155270560 + 99389935 99395962 L1PA2 6032 + 0 6032 1352 255 2 1 4922 0 1 688 0 5 160 chain 27669 chrX 155270560 + 99399035 99399400 THE1C 375 + 0 372 94150 15 0 6 159 12 14 155 1 0 23 chain 101886 chrX 155270560 + 99399403 99400839 THE1C-int 1605 + 0 1592 36289 12 4 3 96 7 60 63 2 1 92 1 7 89 0 3 19 6 13 57 17 16 68 5 3 176 4 5 134 21 112 192 0 1 127 4 3 240 chain 24190 chrX 155270560 + 99400852 99401203 THE1C 375 + 0 347 109276 109 18 15 60 12 11 152 chain 485701 chrX 155270560 + 99405591 99418014 L1PA7 6471 - 12 6467 7532 231 6026 0 525 0 1 73 0 3 8 11 15 157 1 2 770 0 8 54 12 6 194 2 0 359 0 1 4 7 6 32 10 6 108 0 17 257 0 4 904 1 2 4 1 0 67 2 3 806 4 1 6 0 4 68 1 0 127 1 0 252 9 2 11 1 0 111 9 11 166 14 7 6 0 7 134 30 31 171 27 49 409 2 17 46 16 16 176 chain 17646 chrX 155270560 + 99410544 99410808 L1PA8 5853 - 0 257 133849 82 12 11 19 2 1 52 1 0 9 1 0 71 2 0 8 1 0 4 chain 81456 chrX 155270560 + 99418705 99419970 L1M1 2793 - 108 1411 42985 11 1 0 46 1 0 64 3 6 124 7 6 50 1 4 5 3 0 37 5 8 30 30 31 43 0 1 94 16 19 25 1 2 319 6 0 42 0 11 7 17 6 23 3 0 167 0 1 4 5 8 27 0 35 43 1 0 4 chain 102367 chrX 155270560 + 99420177 99421284 L1PA2 6032 + 4584 5695 36176 598 0 4 509 chain 30502 chrX 155270560 + 99421284 99421622 L1PA2 6032 + 5696 6032 83424 331 2 0 5 chain 53328 chrX 155270560 + 99422131 99422713 L1PA2 6032 + 3921 4507 56815 308 0 4 274 chain 141526 chrX 155270560 + 99422714 99424235 L1PA2 6032 + 4507 6028 25895 1521 chain 286875 chrX 155270560 + 99433414 99437810 L1PB1 5432 + 1657 5419 14231 496 1 0 4 1 2 186 1 0 153 4 0 158 1 0 127 24 1 50 1 0 259 3 0 149 6 1 22 0 1 444 1 0 8 3 6 115 562 0 274 2 0 56 1 0 366 0 2 80 11 4 482 1 2 9 3 0 24 1 0 9 1 0 6 12 8 6 2 0 53 2 1 16 1 0 43 1 0 15 1 0 5 2 0 8 9 0 16 11 8 14 2 0 24 1 0 22 0 3 9 1 0 15 chain 33169 chrX 155270560 + 99435632 99436145 MLT2A1 477 + 0 477 78954 142 0 1 26 1 5 30 0 4 174 1 3 9 3 0 5 0 1 10 1 0 6 6 0 10 48 10 41 chain 2907 chrX 155270560 + 99445129 99445161 MIR 256 - 157 189 226906 32 chain 522257 chrX 155270560 + 99463812 99470242 L1PA7 6471 - 6 6471 4933 746 1 4 94 4 3 306 0 5 245 0 3 110 1 0 463 0 1 238 3 4 233 7 6 219 3 4 174 0 1 499 0 2 5 17 23 174 10 14 255 0 2 168 0 1 176 3 0 125 0 14 274 1 0 4 0 1 105 0 2 494 0 1 50 1 5 221 0 1 88 4 0 6 4 8 485 8 0 26 1 0 177 33 31 169 chain 9377 chrX 155270560 + 99475699 99475831 MER30 238 - 30 179 163667 9 3 0 66 6 26 48 chain 6592 chrX 155270560 + 99476975 99477068 L1MA5 2750 + 2570 2661 180519 60 1 0 16 1 0 15 chain 79446 chrX 155270560 + 99490089 99491064 L1PA8A 6298 + 5316 6288 43851 14 8 7 16 0 1 135 3 1 14 1 0 784 chain 53566 chrX 155270560 + 99491226 99491937 L1P3 4156 - 3463 4156 56633 291 18 7 75 1 0 19 5 0 40 24 23 238 chain 5044 chrX 155270560 + 99504226 99504303 MADE1 96 - 2 96 194687 14 0 1 26 5 21 32 chain 233463 chrX 155270560 + 99506413 99509897 L1PA13 3608 + 95 3548 17120 12 8 6 23 4 1 27 3 2 11 3 0 28 26 15 17 6 8 46 2 0 48 7 11 66 21 23 6 2 0 14 9 6 16 1 0 17 2 0 18 2 0 17 1 0 98 2 0 125 0 1 80 0 3 186 1 0 62 0 1 23 3 4 281 11 6 110 16 20 414 2 0 174 2 1 119 1 0 191 0 1 160 1 3 18 45 46 93 7 21 191 5 17 148 9 8 21 1 0 112 3 0 64 8 7 20 2 0 24 1 0 10 2 0 47 9 5 19 1 0 16 0 3 11 18 7 14 1 0 6 7 1 10 1 0 3 2 0 10 chain 558618 chrX 155270560 + 99510484 99516613 L1PA3long 6157 + 5 6144 442 4848 6 16 1275 chain 482599 chrX 155270560 + 99521528 99527372 L1PA7 6471 + 0 6468 7639 167 11 10 4 0 1 229 0 1 262 9 10 474 0 2 267 0 13 329 0 4 363 0 1 227 0 1 202 18 19 27 1 2 17 0 2 423 0 567 224 0 3 89 0 30 31 2 1 637 1 0 559 0 1 99 1 0 5 1 2 242 0 1 73 1 0 838 2 0 9 chain 5001 chrX 155270560 + 99539010 99539091 L1PB 1623 + 1086 1169 195121 13 12 14 56 chain 3834 chrX 155270560 + 99557446 99557491 MER8 282 + 3 47 209852 27 1 0 17 chain 376614 chrX 155270560 + 99559128 99564525 L1PB1 5432 + 17 5426 10859 9 6 0 280 7 6 377 1 2 32 1 0 19 3 9 10 13 8 473 0 4 140 43 52 174 2 1 67 1 6 427 0 2 18 0 2 363 3 0 42 5 4 12 4 10 253 0 1 4 1 0 12 30 40 304 12 16 435 2 1 57 0 2 34 11 16 30 1 0 250 0 1 17 21 22 97 6 10 37 0 2 4 1 0 8 0 1 146 0 1 113 0 7 140 3 0 170 1 9 123 6 9 33 0 9 15 21 21 66 56 32 4 1 0 20 1 0 4 3 2 11 19 13 52 18 16 45 1 0 15 2 0 6 59 44 24 1 0 22 1 0 12 1 0 18 1 0 4 chain 126697 chrX 155270560 + 99575808 99577986 L1PB1 5432 - 12 1829 28886 29 1 0 21 1 0 24 2 0 14 1 0 4 3 1 15 5 4 12 11 0 15 1 0 39 6 5 15 3 2 53 2 0 8 73 81 25 2 1 5 0 1 420 13 10 39 7 17 99 310 2 73 0 1 169 0 1 4 1 0 41 1 0 143 28 1 205 0 3 80 33 13 122 chain 26298 chrX 155270560 + 99593056 99593362 AluYa5 310 + 0 304 98840 64 3 1 239 chain 49467 chrX 155270560 + 99630124 99630703 L1PA5 6144 - 4 611 59411 51 0 4 65 0 19 85 0 2 103 0 1 266 0 2 9 chain 28782 chrX 155270560 + 99649881 99650184 AluYa5 310 - 7 310 89971 303 chain 4981 chrX 155270560 + 99681795 99681856 MLT1C 463 - 339 400 195347 61 chain 101499 chrX 155270560 + 99707570 99709013 THE1D-int 1627 + 0 1622 36397 38 5 7 109 6 19 124 0 1 50 0 102 231 0 1 20 1 2 63 6 2 68 22 96 220 16 18 14 23 7 385 1 0 14 1 4 16 1 2 9 chain 39020 chrX 155270560 + 99727615 99728243 L1PA13 3608 + 2871 3485 70717 81 1 3 31 1 0 4 0 1 141 6 5 17 10 9 19 0 1 20 4 1 59 12 10 62 1 0 51 2 0 11 14 12 35 8 4 18 1 0 19 chain 25871 chrX 155270560 + 99735357 99735656 AluYk4 311 + 2 300 100566 130 1 0 168 chain 170126 chrX 155270560 + 99755923 99757777 L1PA3long 6157 - 1 1855 22034 147 1 0 1070 0 1 636 chain 35902 chrX 155270560 + 99760111 99760597 MLT2A1 477 + 0 477 75013 169 4 1 215 47 41 51 chain 24846 chrX 155270560 + 99769410 99769701 AluY 311 + 10 301 105641 113 1 0 9 0 1 168 chain 8862 chrX 155270560 + 99786701 99786876 L1MB1 2102 - 1766 1938 166316 35 13 12 59 30 28 38 chain 61688 chrX 155270560 + 99788962 99789674 L1PA6 6164 + 5447 6162 52040 53 0 3 659 chain 50592 chrX 155270560 + 99792146 99792751 L1PA6 6164 - 8 625 58584 61 0 1 64 0 10 173 0 1 307 chain 62531 chrX 155270560 + 99793001 99793750 L1PA7 6471 - 13 759 51664 22 1 0 155 7 5 564 chain 76337 chrX 155270560 + 99794537 99795488 L1PA8 5853 - 0 950 45297 93 1 0 14 1 2 51 7 6 5 1 0 74 2 0 44 1 0 549 0 9 7 6 1 95 chain 79949 chrX 155270560 + 99804142 99805232 L1MA2 4263 + 2234 3324 43619 246 0 1 27 1 0 9 1 2 9 23 29 87 1 0 57 5 0 73 0 1 7 2 0 124 3 4 239 0 1 83 6 4 87 chain 556750 chrX 155270560 + 99805259 99812538 L1PA2 6032 + 0 6032 642 3170 1 0 2009 1 0 1 1245 0 852 chain 94296 chrX 155270560 + 99810512 99811651 SVA_D 2077 + 735 2056 38261 55 0 262 41 1 0 127 1 0 168 0 1 2 38 0 10 41 0 655 chain 2414 chrX 155270560 + 99810907 99810945 SVA_D 2077 + 1087 1125 70816 38 chain 2604 chrX 155270560 + 99810955 99810996 SVA_D 2077 + 1135 1176 70816 41 chain 35041 chrX 155270560 + 99822824 99823272 LTR71A 459 - 0 448 76133 14 2 0 220 0 1 19 4 5 189 chain 21497 chrX 155270560 + 99827590 99827843 L1PA7 6471 - 1 254 122156 253 chain 38078 chrX 155270560 + 99831782 99832243 LTR71A 459 - 0 459 72016 14 2 0 445 chain 40820 chrX 155270560 + 99856570 99858114 L1PB1 5432 - 28 698 68148 13 1 0 21 1 0 24 2 0 15 7 4 19 21 7 20 320 0 44 6 5 10 3 2 50 599 68 50 1 0 5 0 1 312 chain 43693 chrX 155270560 + 99865810 99866361 MER41A 554 - 1 554 64576 71 1 2 178 5 6 296 chain 51533 chrX 155270560 + 99872320 99873122 L1PA11 4918 + 3659 4578 57940 207 0 156 110 1 2 5 1 0 189 5 0 67 2 1 9 5 1 38 11 1 30 4 2 11 1 0 20 45 32 14 1 0 13 2 0 11 chain 26985 chrX 155270560 + 99875082 99875385 AluY 311 + 7 311 96332 118 1 2 184 chain 18770 chrX 155270560 + 99876860 99877079 AluYf4 310 + 76 293 130773 136 0 1 39 1 0 14 2 0 27 chain 54264 chrX 155270560 + 99878743 99879373 L1PA5 6144 - 1 633 56191 245 0 1 66 0 1 319 chain 7736 chrX 155270560 + 99883764 99883850 L1PA8 5853 - 1 87 172678 86 chain 10972 chrX 155270560 + 99886871 99886997 L1PA7 6471 - 3 133 156308 53 0 4 73 chain 11261 chrX 155270560 + 99912647 99912785 L1MA5 2750 - 476 612 155185 48 2 0 88 chain 23808 chrX 155270560 + 99962946 99963222 L1PA7 6471 + 6183 6467 111427 53 0 2 75 0 1 116 0 5 32 chain 2941 chrX 155270560 + 99963668 99963725 MIRb 242 + 30 86 226311 31 14 13 12 chain 150354 chrX 155270560 + 99978129 99979868 SVA_D 2077 + 63 2077 24558 421 0 76 127 0 40 189 5 42 34 0 1 4 0 1 38 0 2 55 1 0 127 1 0 37 0 78 14 7 52 44 1 0 501 1 0 125 1 0 6 chain 56915 chrX 155270560 + 99988582 99990304 Tigger1 2417 + 1549 2358 54586 191 315 9 59 11 13 72 309 0 326 304 0 22 0 5 5 2 0 65 1 2 40 chain 23762 chrX 155270560 + 99990380 99990662 AluY 311 + 8 291 111688 117 1 2 164 chain 16503 chrX 155270560 + 100007156 100007346 L1PA6 6164 - 2 192 136907 190 chain 155787 chrX 155270560 + 100011931 100016414 L1PB1 5432 + 2967 5430 23882 39 1 2 6 2 0 126 1 9 391 1 3 40 0 1 138 415 68 100 1321 0 72 5 6 16 0 1 184 1 0 57 4 1 78 0 1 4 0 1 66 12 11 99 9 7 75 5 1 58 3 0 80 2 0 104 23 26 121 6 1 6 0 8 28 12 3 98 1 4 7 3 0 24 1 0 6 1 0 13 18 12 43 10 9 11 1 4 43 361 30 17 5 2 18 2 0 24 1 0 21 2 1 12 1 0 18 1 0 4 1 0 4 chain 115325 chrX 155270560 + 100013240 100014512 L1PA4 6152 - 1 1272 32638 348 1 0 923 chain 25179 chrX 155270560 + 100019996 100020299 AluY 311 + 0 299 103851 118 5 0 13 1 2 166 chain 179141 chrX 155270560 + 100024304 100026451 L1PA8 5853 - 6 2169 21060 34 0 4 68 2 1 47 1 0 14 2 1 65 6 4 45 1 0 477 0 1 77 0 2 129 0 1 21 0 5 197 0 2 91 0 1 165 0 6 705 chain 3431 chrX 155270560 + 100029913 100029952 L1PB1 5432 + 5064 5103 216547 39 chain 3308 chrX 155270560 + 100030016 100030062 L1PB1 5432 + 5114 5158 218800 24 1 0 8 1 0 12 chain 15014 chrX 155270560 + 100030067 100030364 L1PB1 5432 + 5159 5427 141281 8 2 0 53 18 16 44 1 0 16 2 0 6 17 6 23 2 0 15 8 4 20 1 0 21 1 0 13 1 0 18 2 0 5 chain 131842 chrX 155270560 + 100033467 100035251 L1PBa 3878 - 70 1841 27666 6 2 0 9 1 0 12 6 4 4 1 0 15 5 0 9 2 1 11 2 0 21 2 1 493 3 0 171 0 3 247 0 2 78 13 10 48 1 2 307 0 2 143 0 1 5 4 3 163 chain 42008 chrX 155270560 + 100039722 100040303 PRIMA4_LTR 623 + 0 623 66613 175 1 24 62 8 9 90 5 9 13 1 8 155 5 7 49 0 5 17 chain 10321 chrX 155270560 + 100041620 100041748 LTR7Y 441 - 16 144 159026 128 chain 28140 chrX 155270560 + 100043952 100044307 HERVH-int 3825 - 0 376 92507 58 0 8 193 1 0 4 0 1 7 0 13 92 chain 39900 chrX 155270560 + 100054396 100056073 PRIMA4_LTR 623 + 2 623 69455 23 2 0 150 1 24 61 2 3 102 0 4 10 1111 23 43 0 1 107 0 2 21 1 4 43 chain 2103 chrX 155270560 + 100055823 100055856 PRIMA4_LTR 623 + 311 340 237613 17 4 0 12 chain 370847 chrX 155270560 + 100061249 100067057 L1PB1 5432 - 20 5010 11063 8 1 0 9 3 4 21 1 0 13 5 6 5 2 0 14 8 5 16 9 0 14 4 1 16 1 0 43 1 0 14 8 7 49 2 0 9 16 11 9 1 0 21 3 0 12 1 2 98 1 0 75 0 1 61 0 1 26 30 37 97 0 12 12 0 3 52 3 0 5 2 0 123 0 1 44 0 4 244 0 2 231 0 1 4 2 1 174 0 1 56 2 1 187 503 2 46 0 1 606 0 3 49 1 0 20 1 0 167 0 2 28 322 4 81 0 1 44 5 4 206 0 1 274 2 1 262 0 1 72 0 5 268 9 0 6 1 0 661 0 1 6 10 15 93 0 1 5 13 12 179 chain 35175 chrX 155270560 + 100063121 100063618 LTR10F 562 - 0 562 75946 77 10 8 54 0 4 47 2 4 91 5 11 13 0 24 44 1 4 38 0 28 115 chain 23292 chrX 155270560 + 100074211 100074501 AluSp 311 - 19 311 114241 54 1 2 129 0 1 106 chain 7895 chrX 155270560 + 100095377 100095518 MER20 218 + 91 218 171684 62 37 23 42 chain 193704 chrX 155270560 + 100112160 100114860 L1PA15 4387 - 21 2625 19710 10 1 0 27 5 0 14 3 1 44 6 3 29 4 6 15 1 0 10 4 0 22 1 0 76 10 9 168 1 0 40 8 6 46 59 18 9 2 0 249 17 1 133 0 2 155 0 3 101 4 0 909 0 10 8 14 0 107 1 0 92 6 7 6 1 0 118 8 0 52 6 0 51 0 1 14 1 0 32 chain 3073 chrX 155270560 + 100121570 100121611 MADE1 96 + 5 46 223489 41 chain 69904 chrX 155270560 + 100124465 100125243 L1P1 4361 - 33 810 48434 23 1 0 155 1 0 574 0 1 24 chain 66315 chrX 155270560 + 100134513 100135315 L1PA8 5853 + 5058 5853 49939 506 1 0 44 2 0 70 2 1 14 6 5 42 2 1 19 1 0 93 chain 4998 chrX 155270560 + 100145392 100145471 MADE1 96 - 1 96 195155 46 13 29 20 chain 16783 chrX 155270560 + 100191631 100191928 THE1D 372 - 50 372 136158 78 0 6 43 0 4 11 13 11 6 0 1 30 12 31 16 27 24 61 chain 7215 chrX 155270560 + 100201429 100201541 LTR33 499 - 0 110 175968 44 16 14 52 chain 6432 chrX 155270560 + 100208977 100209094 L1MB8 1703 + 954 1069 181760 56 29 27 32 chain 28783 chrX 155270560 + 100215805 100216112 AluYa5 310 + 0 305 89966 97 2 0 208 chain 128506 chrX 155270560 + 100226714 100228356 SVA_F 1814 - 0 1479 28452 600 0 49 154 1 0 10 1 0 39 0 15 49 79 0 15 1 0 28 1 0 8 154 10 502 chain 7098 chrX 155270560 + 100227568 100227647 SVA_F 1814 - 725 804 91250 79 chain 10089 chrX 155270560 + 100227720 100227824 SVA_F 1814 - 698 802 160139 104 chain 46367 chrX 155270560 + 100233149 100233895 L1MA3 4352 - 3549 4319 61712 18 14 12 79 7 14 10 1 2 26 0 3 5 3 0 23 2 0 59 0 6 26 1 0 4 0 1 66 0 4 24 1 2 12 23 28 57 1 7 9 6 0 68 0 4 57 1 3 19 1 0 118 1 0 4 chain 7398 chrX 155270560 + 100246813 100247031 L1MA4 2864 + 2612 2807 174782 25 4 0 33 102 78 14 0 5 40 chain 5737 chrX 155270560 + 100254752 100254911 MER5B 177 + 15 163 187760 22 1 0 7 1 0 8 12 13 36 34 28 9 1 0 15 3 0 10 chain 24540 chrX 155270560 + 100266861 100267307 Tigger3b 1229 - 733 1165 107313 162 5 6 30 0 3 45 1 0 6 1 7 13 56 32 45 33 34 49 chain 2475 chrX 155270560 + 100267154 100267180 Tigger3b 1229 + 152 178 227759 26 chain 25910 chrX 155270560 + 100267314 100267603 L1PA3long 6157 - 1 290 100378 289 chain 18809 chrX 155270560 + 100267603 100267805 L1PA3long 6157 + 5666 5868 130125 202 chain 20815 chrX 155270560 + 100274674 100274917 AluSg7 307 - 61 306 124555 118 0 2 125 chain 25228 chrX 155270560 + 100293074 100293387 AluSp 311 + 0 309 103596 132 1 0 114 3 0 63 chain 29469 chrX 155270560 + 100321704 100322044 L1PA6 6164 + 5822 6162 86757 340 chain 25371 chrX 155270560 + 100328295 100328587 AluSp 311 + 9 304 102827 82 0 3 210 chain 10779 chrX 155270560 + 100331828 100331973 LTR8 732 + 583 732 157077 25 0 3 17 4 5 99 chain 11212 chrX 155270560 + 100371198 100371368 MER30 238 + 0 210 155380 18 1 19 68 6 23 11 1 0 22 0 6 43 chain 4631 chrX 155270560 + 100400615 100400689 MADE1 96 - 1 91 199289 36 1 0 4 5 22 28 chain 19077 chrX 155270560 + 100402219 100402465 L1PA8 5853 - 0 242 129886 93 1 0 19 2 1 40 1 0 21 2 1 67 chain 41080 chrX 155270560 + 100411505 100412180 L1PB1 5432 - 5 645 67794 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 12 1 16 1 0 44 1 0 15 2 1 50 20 14 10 1 0 7 2 1 24 5 0 8 2 3 91 11 10 189 0 1 4 3 4 17 chain 3784 chrX 155270560 + 100413221 100413261 L1PREC2 3366 - 691 731 210615 40 chain 30050 chrX 155270560 + 100438234 100438577 LTR14A 344 - 0 344 84645 337 0 1 6 chain 134036 chrX 155270560 + 100442621 100444304 HERVK14-int 1672 - 7 1671 27199 6 1 0 22 4 3 115 1 0 9 2 0 31 1 0 63 1 0 27 0 1 4 1 0 70 7 6 163 0 2 38 1 0 33 2 0 8 1 0 3 1 0 79 1 0 163 1 0 206 1 0 46 2 1 261 2 1 216 1 0 47 1 0 11 1 0 29 chain 29445 chrX 155270560 + 100444520 100444860 LTR14A 344 - 0 344 86874 72 0 4 268 chain 21231 chrX 155270560 + 100446762 100447500 L1MA6 2487 - 85 702 123098 4 1 0 20 3 0 38 271 164 105 53 51 17 1 0 9 19 19 48 9 8 64 11 6 17 14 13 34 chain 25172 chrX 155270560 + 100524454 100524801 THE1B 368 - 0 368 103900 39 15 23 35 0 2 75 9 6 20 1 0 114 0 15 39 chain 5738 chrX 155270560 + 100529092 100529157 MER6B 211 - 0 65 187753 65 chain 26923 chrX 155270560 + 100529540 100529952 MER6A 605 + 178 579 96538 58 43 37 148 1 0 121 8 4 33 chain 2898 chrX 155270560 + 100567677 100567732 L1MD 993 - 526 582 227057 26 11 12 18 chain 90778 chrX 155270560 + 100570817 100574336 L1MA3 4352 - 70 2371 39366 22 7 5 76 1 0 63 0 3 8 47 20 180 0 1 106 1 0 60 0 13 53 2 1 150 2168 971 47 22 13 117 0 4 56 1 0 332 chain 408393 chrX 155270560 + 100581976 100589828 L1PB1 5432 + 63 5414 9846 490 652 30 603 351 48 160 310 11 126 24 0 121 312 0 129 4 5 305 1 0 4 0 1 397 7 0 195 7 8 141 618 0 60 0 10 165 9 10 21 312 0 399 0 1 224 3 5 743 0 4 48 0 2 99 3 0 65 0 9 147 8 9 156 0 2 78 22 20 20 1 0 13 1 0 11 4 0 10 2 0 50 2 1 17 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 1 0 13 3 1 24 1 0 4 2 1 16 1 0 13 1 0 10 chain 22506 chrX 155270560 + 100587209 100587500 AluSp 311 + 10 298 118004 18 1 0 247 0 2 10 4 0 11 chain 7432 chrX 155270560 + 100596869 100596951 MLT2A1 477 + 0 82 174562 82 chain 4732 chrX 155270560 + 100623084 100623190 MIR 256 + 84 201 198133 33 1 0 6 0 1 17 32 43 17 chain 17205 chrX 155270560 + 100635733 100636021 AluSp 311 + 15 308 135024 46 25 23 48 22 30 114 7 6 26 chain 25526 chrX 155270560 + 100639307 100639611 AluSp 311 + 4 300 102112 224 8 0 72 chain 8839 chrX 155270560 + 100642214 100642331 L1PA8A 6298 - 14 132 166437 98 3 4 16 chain 24585 chrX 155270560 + 100675914 100676212 AluSp 311 + 11 303 107061 81 4 0 40 2 0 171 chain 544823 chrX 155270560 + 100689640 100696110 L1PA4 6152 - 14 6152 2097 844 1 0 116 5 1 2000 1 0 6 0 1 388 17 1 250 308 0 849 6 0 946 1 0 116 1 5 615 chain 48526 chrX 155270560 + 100704204 100705238 L1M1 2793 - 1342 2250 60088 26 5 6 56 0 1 35 0 4 54 7 0 21 2 0 68 2 1 176 23 22 80 1 0 5 5 3 54 1 0 9 2 0 32 2 1 25 11 8 20 8 4 10 46 33 36 94 26 18 34 18 9 3 0 8 4 3 9 1 0 10 3 0 6 2 0 11 chain 25102 chrX 155270560 + 100717348 100717651 AluSc5 308 + 0 301 104281 4 0 1 291 3 0 5 chain 315217 chrX 155270560 + 100726532 100729969 L1HS 6032 + 601 4038 12796 3437 chain 146025 chrX 155270560 + 100757784 100759402 L1PA4 6152 - 0 1629 25166 6 0 5 7 0 6 1605 chain 519041 chrX 155270560 + 100779329 100785477 L1PA6 6164 + 0 6161 5263 195 0 1 190 7 22 92 15 14 419 0 4 439 28 0 148 4 20 779 4 5 63 0 2 601 0 1 88 0 1 100 6 7 503 1 0 3 1 0 357 0 1 834 0 1 1271 chain 18575 chrX 155270560 + 100794641 100795826 L1PA5 6144 + 4828 6014 34898 1173 0 1 12 chain 498161 chrX 155270560 + 100795848 100801351 L1PA3long 6157 + 0 6157 6948 94 0 526 156 0 128 5253 chain 2038 chrX 155270560 + 100801353 100801483 L1PA5 6144 + 6014 6144 34898 130 chain 73003 chrX 155270560 + 100811254 100812147 L1PA8A 6298 - 7 903 47025 409 3 5 305 0 2 80 2 1 94 chain 6907 chrX 155270560 + 100812197 100812289 L1MA3 4352 - 259 356 178136 42 1 6 49 chain 18157 chrX 155270560 + 100817673 100817946 LTR8 732 - 465 720 132441 54 25 26 8 19 0 167 chain 326751 chrX 155270560 + 100821533 100825634 L1P3 4156 + 0 4136 12315 203 4 0 6 0 4 30 0 1 7 2 1 24 1 0 5 1 2 37 2 1 88 4 0 61 0 1 103 10 7 158 0 5 34 2 1 37 1 2 43 6 5 163 0 2 201 0 4 13 13 32 404 1 4 137 3 0 86 1 3 371 0 1 229 0 2 110 0 2 7 0 1 66 0 1 841 0 4 23 0 1 212 0 2 319 2 0 7 2 1 21 chain 20368 chrX 155270560 + 100825764 100826032 L1PA7 6471 + 6168 6451 126004 38 1 0 6 0 1 99 1 2 43 0 14 80 chain 48899 chrX 155270560 + 100832118 100832664 L1PA4 6152 - 0 546 59806 546 chain 552959 chrX 155270560 + 100835015 100841163 L1PA3long 6157 - 0 6153 1069 1204 0 1 594 0 4 60 0 2 1121 2 1 1928 1 0 920 5 6 7 1 0 305 chain 242210 chrX 155270560 + 100843600 100847087 L1PA13 3608 - 86 3522 16661 4 1 0 16 6 1 10 6 3 23 1 0 17 2 0 5 2 0 41 10 11 55 1 0 42 0 1 20 2 0 37 0 1 48 7 0 27 1 0 32 2 1 357 5 11 137 0 1 6 1 0 102 0 1 85 44 15 180 0 27 300 0 2 5 8 0 586 7 11 54 0 2 138 7 3 15 5 13 164 0 6 275 2 0 99 6 5 11 2 0 15 6 4 16 1 0 18 8 3 15 2 0 17 1 0 13 1 0 124 1 0 3 1 0 70 29 15 26 3 0 7 7 6 26 3 0 25 6 4 19 1 0 4 chain 17923 chrX 155270560 + 100885998 100886240 L1MA7 2200 - 410 654 133053 19 4 8 44 1 0 166 1 0 7 chain 15132 chrX 155270560 + 100888787 100888993 L1PA7 6471 - 12 220 140968 148 14 16 44 chain 9497 chrX 155270560 + 100888993 100889100 U6 107 - 0 107 163088 107 chain 2628 chrX 155270560 + 100896576 100896608 MLT1J2 417 + 98 130 231329 32 chain 232546 chrX 155270560 + 100901022 100903610 L1PA5 6144 + 3551 6141 17169 186 0 2 2402 chain 164649 chrX 155270560 + 100954222 100956775 L1MA1 4479 + 1698 4193 22716 142 9 7 34 1 2 201 10 8 45 0 4 21 4 0 66 1 0 150 3 0 75 0 1 4 1 0 144 1 0 4 14 4 29 2 0 28 9 8 96 2 0 33 1 0 51 1 0 7 0 4 92 1 0 28 2 0 101 7 10 38 1 0 6 0 1 7 7 6 85 15 14 11 3 1 50 6 1 72 2 0 124 1 0 22 13 12 6 0 1 154 0 1 5 1 0 25 2 0 5 2 1 10 1 0 11 1 0 60 1 0 5 18 16 6 0 1 5 1 0 64 0 3 20 31 27 101 5 4 29 2 0 35 1 0 9 1 0 11 4 1 9 7 0 16 1 0 5 chain 39822 chrX 155270560 + 100965185 100965734 MER41A 554 + 0 554 69591 42 0 1 44 5 6 120 3 5 212 15 16 108 chain 539618 chrX 155270560 + 100966049 100972073 L1PA3long 6157 - 1 6153 2877 16 1 0 1518 1 0 3381 0 1 336 0 128 612 11 12 148 chain 64437 chrX 155270560 + 100983713 100984433 L1PA4 6152 - 11 731 50823 137 0 1 398 2 0 179 0 1 4 chain 100803 chrX 155270560 + 100993421 100994659 SVA_A 1864 + 0 1725 36560 13 1 0 8 1 0 485 0 376 141 3 0 21 17 124 103 50 59 395 chain 4321 chrX 155270560 + 101005887 101005933 MADE1 96 - 50 96 202952 46 chain 268374 chrX 155270560 + 101024053 101028425 L1MA1 4479 - 317 4241 15268 11 1 0 9 1 0 35 17 15 14 1 0 122 1 0 4 6 4 24 8 12 18 7 3 32 1 0 14 2 0 7 10 9 69 6 5 10 2 1 5 2 0 24 1 0 165 31 30 70 0 1 1 415 0 33 36 33 36 0 2 81 5 0 12 10 9 59 9 5 20 2 0 41 0 3 129 2 0 25 6 5 97 6 0 54 1 0 26 9 7 103 1 0 74 0 1 181 2 1 249 4 0 21 0 4 45 2 1 54 0 1 82 1 0 147 6 3 46 1 0 5 0 1 5 7 9 231 0 4 53 0 1 165 7 5 271 7 8 15 3 1 79 2 1 152 21 24 196 1 5 207 0 2 31 10 8 7 0 1 33 chain 29557 chrX 155270560 + 101036764 101037071 AluYb8 318 + 0 307 86386 307 chain 3824 chrX 155270560 + 101046189 101046248 L1MA4 2864 - 58 118 210011 33 5 6 21 chain 16776 chrX 155270560 + 101051433 101051678 L1PA15 4387 + 2771 3006 136183 72 0 2 88 15 4 53 1 0 16 chain 491960 chrX 155270560 + 101060928 101066801 L1PA5 6144 - 5 6141 7274 834 0 1 252 9 0 267 0 2 161 4 1 987 0 1 436 2 0 29 14 14 711 0 275 452 0 1 478 1 2 77 0 3 432 0 1 13 16 8 132 10 9 319 10 11 227 chain 94886 chrX 155270560 + 101066812 101068013 L1P1 4361 - 3126 4357 38128 76 0 3 13 1 7 81 1 0 4 0 1 26 0 25 54 0 4 212 9 0 259 0 1 465 chain 118385 chrX 155270560 + 101069769 101071346 THE1B-int 1605 - 0 1605 31652 547 15 16 31 0 1 5 1 0 43 5 6 186 31 32 42 0 1 4 4 3 231 0 25 432 chain 13971 chrX 155270560 + 101071346 101071531 THE1B 368 - 0 193 144679 49 11 19 125 chain 451911 chrX 155270560 + 101071546 101077253 L1PA8 5853 - 0 5745 8701 56 8 0 35 0 2 3 3 0 8 6 5 35 17 16 14 1 0 71 2 0 7 2 1 36 1 0 42 0 1 249 1 0 29 0 3 152 1 4 73 0 2 56 0 2 69 1 0 4 1 2 150 2 1 305 39 16 70 1 0 327 1 2 206 0 2 314 0 1 95 1 0 585 0 1 82 0 1 233 0 4 378 19 17 67 0 1 111 0 2 699 0 2 47 0 56 19 0 1 33 2 1 82 0 1 325 0 6 8 0 4 279 0 1 33 17 6 194 chain 167747 chrX 155270560 + 101080885 101082858 L1PA5 6144 + 4195 6135 22311 156 1 3 125 49 0 143 3 0 861 0 3 54 1 0 448 5 10 50 0 10 77 chain 3180 chrX 155270560 + 101081169 101081204 L1PA5 6144 + 6096 6131 221328 35 chain 77062 chrX 155270560 + 101089898 101090897 MER11A 1151 - 4 1151 44936 159 6 7 60 0 1 36 18 0 22 4 37 135 5 6 139 0 7 5 0 29 210 4 0 66 1 0 74 0 99 55 chain 30543 chrX 155270560 + 101105562 101105942 L1PA8A 6298 - 7 383 83349 74 11 7 295 chain 183061 chrX 155270560 + 101109206 101111239 L1PA4 6152 - 9 2044 20676 802 0 2 1231 chain 26929 chrX 155270560 + 101113370 101113655 L1HS 6032 + 5747 6032 96516 285 chain 26369 chrX 155270560 + 101122709 101123005 L1PA4 6152 + 5855 6151 98535 296 chain 130624 chrX 155270560 + 101124092 101125542 L1PA3long 6157 + 4702 6157 27940 608 0 4 509 1 2 332 chain 85888 chrX 155270560 + 101126736 101127765 L1PA8A 6298 - 7 1051 41198 88 0 1 27 7 0 314 0 15 346 5 11 242 chain 135042 chrX 155270560 + 101127970 101129541 L1PA4 6152 + 4587 6151 27012 48 1 0 170 5 0 261 2 0 777 0 1 307 chain 30962 chrX 155270560 + 101152133 101152473 L1PA2 6032 + 5689 6030 82579 31 0 1 309 chain 157264 chrX 155270560 + 101154321 101156430 L1PB1 5432 - 28 2105 23692 13 1 0 21 1 0 24 2 0 14 8 5 19 1 0 12 11 0 16 1 0 18 0 1 24 8 7 9 2 1 53 2 0 6 19 14 13 1 0 19 3 0 8 1 4 474 4 5 737 16 7 141 0 5 257 0 1 96 1 0 53 chain 81941 chrX 155270560 + 101165992 101172253 L1MA1 4479 + 228 4103 42786 54 2 0 61 0 1 4 0 1 11 5 0 57 0 4 256 0 3 20 0 4 39 4892 2523 50 5 0 73 3 0 131 5 4 75 8 2 114 1 0 24 2 0 14 8 7 62 8 7 16 0 2 12 1 0 85 15 11 34 5 6 79 5 4 25 chain 49003 chrX 155270560 + 101170669 101171375 L1PA8 5853 + 5148 5853 59746 134 11 12 270 1 0 45 4 3 70 8 6 11 5 6 35 2 1 19 1 0 19 0 3 71 chain 71669 chrX 155270560 + 101194864 101195655 L1PA3long 6157 - 0 792 47586 767 0 1 24 chain 164568 chrX 155270560 + 101195655 101197466 L1PA3long 6157 + 3551 5361 22732 137 2 1 1672 chain 7800 chrX 155270560 + 101200300 101200393 L1PA8 5853 + 5760 5853 172307 93 chain 455341 chrX 155270560 + 101205482 101211299 L1PA8 5853 + 50 5853 8565 22 2 0 10 63 26 197 15 3 837 1 0 188 0 4 124 0 1 30 0 1 138 3 4 181 0 10 80 0 2 118 23 6 97 0 1 166 0 1 188 4 8 388 2 1 54 18 19 353 0 4 7 2 0 61 0 2 484 20 22 68 1 0 7 0 1 196 2 11 346 0 5 60 0 1 372 0 13 41 2 0 250 1 2 303 1 0 18 1 5 18 5 3 70 12 10 55 1 0 17 2 1 92 chain 288929 chrX 155270560 + 101249175 101252367 L1PA3long 6157 + 2960 6152 14091 1500 0 1 1547 2 1 143 chain 6855 chrX 155270560 + 101267211 101267287 L1PA8 5853 + 5777 5853 178544 76 chain 544599 chrX 155270560 + 101286418 101292554 L1PA4 6152 + 0 6151 2126 498 0 7 739 1 0 4054 0 4 510 0 1 197 0 4 137 chain 8231 chrX 155270560 + 101292612 101292707 L1PA8 5853 + 2118 2213 169770 95 chain 22103 chrX 155270560 + 101292708 101292980 L1PA8 5853 + 2213 2485 119768 272 chain 29457 chrX 155270560 + 101292984 101293365 L1PA8 5853 + 2493 2877 86815 98 0 1 105 0 2 178 chain 2926 chrX 155270560 + 101293371 101293411 L1PA8 5853 + 2882 2926 226570 24 0 4 16 chain 23674 chrX 155270560 + 101293412 101293708 L1PA8 5853 + 2926 3230 112181 234 0 8 62 chain 10992 chrX 155270560 + 101293724 101293862 L1PA8 5853 + 3249 3387 156229 138 chain 90046 chrX 155270560 + 101293863 101294963 L1PA8 5853 + 3387 4485 39635 953 2 0 145 chain 31208 chrX 155270560 + 101295020 101295416 L1PA8 5853 + 4540 4937 82150 85 2 1 56 0 1 4 5 6 244 chain 17143 chrX 155270560 + 101295417 101295659 L1PA8 5853 + 4939 5188 135191 67 1 6 72 14 16 88 chain 27568 chrX 155270560 + 101295659 101296032 L1PA8 5853 + 5189 5564 94440 154 6 8 213 chain 8913 chrX 155270560 + 101296033 101296141 L1PA8 5853 + 5564 5670 166068 44 2 0 62 chain 3457 chrX 155270560 + 101296183 101296234 L1PA8 5853 + 5710 5760 216038 34 1 0 16 chain 6745 chrX 155270560 + 101296235 101296324 L1PA8 5853 + 5760 5853 179354 49 0 4 40 chain 357402 chrX 155270560 + 101302309 101306288 L1PA3long 6157 - 5 3990 11420 120 14 17 570 0 2 55 0 2 293 0 1 1403 2 1 1369 1 0 152 chain 7775 chrX 155270560 + 101306288 101306371 L1PA3long 6157 + 2076 2159 171879 83 chain 41522 chrX 155270560 + 101307220 101307744 L1P3 4156 - 52 576 67255 98 9 8 70 1 0 259 0 1 59 0 1 28 chain 60326 chrX 155270560 + 101307744 101308451 L1PA7 6471 + 5755 6464 52666 49 1 2 507 0 1 150 chain 10273 chrX 155270560 + 101314175 101314314 L1PREC2 3366 + 2399 2532 159264 9 1 0 110 5 0 14 chain 187723 chrX 155270560 + 101319060 101321599 MER4-int 2692 + 87 2692 20270 12 1 0 9 4 5 8 2 0 4 0 1 18 0 1 231 30 0 348 0 1 47 0 7 6 8 1 76 0 2 241 1 0 252 0 1 22 1 17 56 1 0 8 6 9 287 0 1 23 0 4 106 1 0 110 1 0 4 4 3 108 0 2 31 6 72 41 21 16 10 1 0 268 0 1 9 1 11 115 chain 32049 chrX 155270560 + 101343332 101343679 L1PA3long 6157 - 0 347 80781 347 chain 218361 chrX 155270560 + 101352837 101356056 L1PA10 4194 + 271 3251 17979 16 1 0 6 38 13 7 1 0 24 2 0 16 1 0 10 1 0 11 1 0 6 5 0 15 7 0 8 5 4 81 3 0 311 232 49 296 4 8 5 5 0 6 0 1 12 0 4 273 4 5 534 0 1 229 0 4 371 1 0 25 59 43 12 0 4 347 3 1 107 3 0 115 chain 106175 chrX 155270560 + 101358471 101359715 L1PA7 6471 - 19 1259 35221 320 2 0 195 1 0 53 2 0 130 2 3 130 1 0 82 1 0 250 0 2 75 chain 11489 chrX 155270560 + 101359715 101359880 L1PB1 5432 - 330 499 154069 19 1 4 95 1 0 4 0 1 7 1 2 37 chain 22952 chrX 155270560 + 101363819 101364116 THE1B-int 1605 + 0 300 115847 11 3 6 283 chain 68856 chrX 155270560 + 101366392 101367139 L1PA3long 6157 - 0 748 48872 7 0 1 740 chain 45366 chrX 155270560 + 101367139 101367635 L1PA3long 6157 + 4907 5404 62639 399 0 1 97 chain 6240 chrX 155270560 + 101368957 101369023 L1PA5 6144 + 6062 6128 183245 66 chain 36171 chrX 155270560 + 101413158 101413590 L1PA7 6471 - 7 438 74675 76 2 0 67 1 0 183 0 1 76 0 1 27 chain 22531 chrX 155270560 + 101428622 101428921 AluY 311 + 8 301 117888 115 6 4 163 4 0 11 chain 238035 chrX 155270560 + 101430636 101433841 HERVK22-int 3844 - 0 3835 16883 21 1 0 73 1 0 86 75 713 62 1 2 805 0 3 136 0 1 43 3 0 46 0 4 161 0 4 605 0 1 97 0 2 5 9 7 12 46 35 221 1 0 160 7 4 234 0 1 4 1 0 157 0 1 95 3 0 34 chain 26666 chrX 155270560 + 101439370 101439699 L1PA5 6144 + 5816 6144 97433 165 8 9 142 3 1 11 chain 322965 chrX 155270560 + 101441381 101446032 L1PA6 6164 - 212 4090 12483 6 0 7 132 4 3 387 0 3 6 3 0 90 1 5 32 0 7 749 5 4 509 0 1 314 1 0 3 1 0 69 791 0 819 0 1 469 4 6 256 chain 71391 chrX 155270560 + 101443708 101444484 L1PA2 6032 - 1 777 47540 776 chain 492342 chrX 155270560 + 101446034 101452170 L1PA3long 6157 - 0 6149 7253 830 0 1 3053 0 2 8 2 0 39 0 9 763 7 6 183 88 79 220 2 6 216 8 9 14 5 12 128 0 1 122 15 16 263 30 22 16 45 51 5 0 1 74 chain 539872 chrX 155270560 + 101485475 101491607 L1PA3long 6157 - 2 6146 2832 2978 1 0 783 0 4 815 1 2 859 0 7 128 0 1 567 chain 150469 chrX 155270560 + 101496353 101498489 L1MA2 4263 - 161 2288 24543 32 18 12 65 6 7 20 1 0 7 0 1 143 0 1 8 13 10 95 9 24 15 1 0 73 9 5 47 3 0 112 9 5 234 6 0 20 1 0 4 1 2 192 1 0 58 2 3 31 2 1 5 0 1 99 0 2 558 1 0 235 chain 4996 chrX 155270560 + 101508136 101508192 L1PA3long 6157 + 6101 6157 195190 56 chain 406776 chrX 155270560 + 101519893 101524442 L1PA4 6152 + 1598 6143 9882 1837 2 1 102 4 2 1679 1 0 8 0 1 774 1 0 141 chain 266133 chrX 155270560 + 101530522 101534534 L1MA1 4479 - 352 4248 15385 22 2 0 27 1 0 121 16 12 86 1 0 12 2 0 20 6 5 12 4 3 4 1 0 5 0 1 42 1 0 16 2 0 22 46 45 91 0 3 58 3 0 20 19 10 101 3 0 74 5 0 52 5 0 12 4 3 72 17 12 6 2 0 13 5 4 156 2 0 27 1 0 86 7 6 28 2 0 34 1 0 32 13 11 95 2 1 63 20 0 85 8 8 152 0 11 20 1 0 61 3 0 88 2 0 8 5 3 67 7 4 5 2 0 46 0 3 180 8 20 124 5 0 528 5 7 7 1 0 285 10 1 99 15 0 74 2 0 5 7 9 105 24 24 182 10 9 22 22 0 83 1 0 46 chain 88684 chrX 155270560 + 101543521 101546490 L1PB2 3958 - 120 1447 40117 63 7 6 16 2 0 72 1 0 64 1 0 72 1 0 94 6 0 13 2 0 11 21 1 48 4 1 18 2 0 45 7 5 91 5 1 6 0 4 29 1601 6 40 5 6 56 2 0 14 1 0 132 1 0 160 51 48 205 chain 66999 chrX 155270560 + 101544233 101544978 L1PA4 6152 - 856 1601 49655 745 chain 16153 chrX 155270560 + 101544978 101545160 L1PA4 6152 + 5302 5487 137888 91 0 3 91 chain 59827 chrX 155270560 + 101545161 101545812 L1PA4 6152 + 5489 6140 52917 651 chain 14015 chrX 155270560 + 101548994 101549145 L1PA4 6152 + 5984 6135 144529 151 chain 16992 chrX 155270560 + 101587798 101588078 Tigger3c 601 + 31 535 135613 18 31 244 15 0 1 31 12 22 173 chain 3533 chrX 155270560 + 101588828 101588867 MER52D 1964 - 705 744 214832 39 chain 4071 chrX 155270560 + 101597273 101597348 MER5A 189 - 78 152 206304 30 17 16 28 chain 23527 chrX 155270560 + 101601870 101602246 THE1D 372 - 0 372 112975 37 1 0 64 4 0 25 72 73 173 chain 3238 chrX 155270560 + 101606970 101607024 L1MA4 2864 + 2746 2801 220272 21 5 6 28 chain 16846 chrX 155270560 + 101608872 101609103 Tigger3c 601 - 66 308 135999 173 12 22 31 0 1 15 chain 14015 chrX 155270560 + 101647850 101648001 L1PA4 6152 - 17 168 144530 151 chain 93986 chrX 155270560 + 101650504 101653473 L1PB2 3958 + 2511 3838 38353 207 3 0 206 1 0 132 1 0 14 2 0 56 5 6 40 1601 6 131 7 5 45 2 0 18 4 1 48 21 1 11 2 0 13 6 0 94 1 0 72 1 0 64 1 0 72 2 0 16 7 6 63 chain 75261 chrX 155270560 + 101651182 101652016 L1PA4 6152 - 12 850 45889 651 1 2 91 0 3 91 chain 66877 chrX 155270560 + 101652016 101652761 L1PA4 6152 + 4551 5296 49694 745 chain 269879 chrX 155270560 + 101662459 101666471 L1MA1 4479 + 231 4127 15184 46 1 0 83 22 0 22 10 9 311 7 9 5 2 0 73 15 0 100 10 1 285 1 0 7 5 7 528 5 0 124 8 20 178 0 3 48 2 0 5 7 4 63 4 0 97 3 0 67 1 0 20 0 11 152 8 8 85 20 0 63 2 1 95 13 11 32 1 0 34 2 0 28 7 6 86 1 0 27 2 0 156 5 4 13 2 0 6 17 12 72 4 3 12 5 0 52 5 0 74 3 0 101 19 10 20 3 0 58 0 3 91 46 45 22 2 0 16 1 0 42 0 1 5 1 0 4 4 3 12 6 5 20 2 0 12 1 0 86 16 12 121 1 0 27 2 0 22 chain 407257 chrX 155270560 + 101672598 101677146 L1PA4 6152 - 9 4554 9871 919 0 1 4 1 0 1679 4 2 102 2 1 1837 chain 536633 chrX 155270560 + 101705416 101711545 L1PA3long 6157 + 11 6151 3361 103 0 1 4 1 0 459 0 1 128 0 7 859 1 2 817 0 4 781 1 0 1615 5 4 1207 7 0 10 6 13 125 chain 5295 chrX 155270560 + 101723621 101723711 Tigger4a 237 - 66 211 192075 26 8 46 42 0 17 14 chain 117469 chrX 155270560 + 101753252 101754788 THE1B-int 1605 + 0 1600 31973 12 5 6 279 0 1 80 17 81 142 1 0 41 0 1 206 11 9 344 3 2 148 0 1 247 chain 13632 chrX 155270560 + 101760686 101760973 L1MA5A 2387 - 35 286 145845 12 1 0 10 1 0 9 29 15 11 1 0 50 25 13 17 3 0 31 2 1 28 2 0 48 1 0 6 chain 299481 chrX 155270560 + 101777069 101780880 L1PA8A 6298 + 2231 6187 13454 155 0 1 121 0 2 17 0 136 414 0 1 92 0 8 301 1 0 226 3 1 168 1 2 91 1 2 272 1 2 111 0 1 75 4 5 47 25 10 333 9 8 14 0 1 237 1 20 210 0 1 4 1 0 70 6 0 99 6 9 50 0 4 21 2 0 83 8 0 531 chain 70249 chrX 155270560 + 101788364 101789763 L1M1 2793 + 619 1991 48292 16 82 30 22 101 111 33 11 8 44 53 50 47 20 23 166 21 28 53 4 0 12 36 29 71 0 1 65 12 28 97 1 0 4 17 5 232 12 13 77 1 11 44 0 7 45 chain 17454 chrX 155270560 + 101790167 101790416 L1PA8 5853 + 5608 5853 134366 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 5206 chrX 155270560 + 101793351 101793413 L1M1 2793 - 1059 1121 192953 62 chain 16964 chrX 155270560 + 101797483 101797665 L1PA2 6032 - 3 185 135687 182 chain 83302 chrX 155270560 + 101799332 101800364 L1PA6 6164 - 4 1047 42200 47 0 4 47 3 0 5 0 3 38 1 0 13 5 6 109 0 6 342 2 3 420 chain 4874 chrX 155270560 + 101824927 101824987 L1MA5A 2387 + 2230 2290 196548 60 chain 525348 chrX 155270560 + 101829228 101835368 L1PA3long 6157 + 8 6152 4648 73 13 1 483 9 10 135 0 7 973 1 2 661 1 0 97 0 2 2587 0 1 264 0 4 597 0 1 246 chain 133396 chrX 155270560 + 101841529 101842988 L1PA2 6032 - 6 1466 27342 1118 0 1 341 chain 53662 chrX 155270560 + 101842989 101843570 L1PA2 6032 + 3990 4571 56574 581 chain 14319 chrX 155270560 + 101845071 101845388 L1MA4 2864 + 2515 2801 143496 85 11 13 30 1 3 29 3 0 19 79 49 22 3 1 35 chain 21667 chrX 155270560 + 101852241 101852510 L1PA10 4194 + 3896 4161 121513 220 3 0 34 1 0 11 chain 22154 chrX 155270560 + 101866485 101866862 THE1D 372 + 0 372 119577 76 15 0 8 4 0 22 0 2 5 1 0 52 48 56 15 4 10 94 1 0 32 chain 18402 chrX 155270560 + 101871031 101871227 L1PA2 6032 - 4 200 131780 196 chain 131856 chrX 155270560 + 101871233 101872660 L1PA2 6032 + 4403 5831 27664 1308 0 1 119 chain 75683 chrX 155270560 + 101889409 101890546 L1PA14 3548 + 2367 3485 45664 93 1 0 77 2 0 6 2 3 143 2 1 54 0 8 162 1 0 24 3 1 9 7 5 47 9 5 14 0 4 87 12 8 13 2 0 5 2 1 84 1 0 8 0 1 17 1 0 83 1 0 12 5 1 34 5 3 13 1 0 5 1 0 14 0 5 38 6 0 10 1 0 20 chain 9359 chrX 155270560 + 101894898 101895129 MLT1C 463 + 64 298 163754 30 29 30 9 3 2 53 5 7 31 35 37 16 1 0 19 chain 89262 chrX 155270560 + 101896174 101897248 L1PA7 6471 - 2 1062 39904 226 0 2 156 2 0 161 10 1 216 11 0 65 0 3 15 0 3 212 chain 126708 chrX 155270560 + 101900370 101901935 THE1A-int 1579 - 0 1579 28881 402 0 1 56 1 5 215 9 10 228 6 7 555 0 7 93 chain 28524 chrX 155270560 + 101901935 101902290 THE1A 353 - 0 353 91082 142 10 9 92 1 0 110 chain 276988 chrX 155270560 + 101920071 101924234 L1PA10 4194 - 77 4019 14818 778 5 6 54 13 84 229 4 3 174 14 9 105 23 19 16 252 0 17 0 1 99 1 2 105 0 2 139 14 0 17 0 12 20 0 4 505 6 8 164 9 8 42 0 6 138 0 1 52 1 0 67 0 2 445 1 0 4 1 4 288 18 17 65 1 0 10 12 1 12 6 1 12 11 9 5 1 0 21 2 0 22 35 27 14 3 1 19 44 36 10 2 0 7 3 0 11 2 0 13 chain 46265 chrX 155270560 + 101925797 101926292 L1PA2 6032 - 0 495 61801 495 chain 33975 chrX 155270560 + 101926292 101926658 L1PA2 6032 + 5168 5534 77652 366 chain 191433 chrX 155270560 + 101930489 101933634 L1PA10 4194 - 48 2578 19918 30 3 0 9 0 1 367 0 2 184 335 24 72 322 0 152 13 12 7 0 1 151 1 0 28 1 0 236 0 2 122 0 2 66 41 16 29 4 5 402 0 4 289 2 1 72 3 4 85 0 1 6 1 0 11 1 36 70 0 1 30 chain 8075 chrX 155270560 + 101933634 101933730 U6 107 - 0 96 170612 96 chain 541085 chrX 155270560 + 101940824 101946951 L1PA4 6152 - 11 6146 2654 144 0 1 611 0 1 76 0 4 201 0 1 1897 1 2 1261 1 0 192 0 1 1322 3 0 5 1 4 412 chain 5584 chrX 155270560 + 101984770 101984840 L1MCb 1641 + 1179 1249 189234 70 chain 33581 chrX 155270560 + 101988724 101989165 LTR7 482 - 9 482 78272 167 0 1 8 3 34 35 3 4 109 15 14 101 chain 3717 chrX 155270560 + 102027176 102027223 L1ME1 1623 - 357 405 211669 23 0 1 24 chain 29243 chrX 155270560 + 102032102 102032415 AluYb8 318 - 5 318 87834 313 chain 420216 chrX 155270560 + 102032415 102037094 L1PA4 6152 - 371 5057 9527 1296 0 2 229 1 0 313 0 1 430 0 1 142 0 1 2207 0 3 61 chain 3489 chrX 155270560 + 102038321 102038360 L1M1 2793 + 959 998 215520 39 chain 48565 chrX 155270560 + 102042134 102042757 PRIMA4_LTR 623 + 0 623 60066 188 4 0 38 15 17 89 1 0 46 6 9 236 chain 190151 chrX 155270560 + 102043818 102046326 MER4-int 2692 - 0 2538 20032 127 1 0 191 6 7 55 0 1 39 1 0 4 1 4 73 0 1 52 0 1 5 1 3 240 1 0 345 0 4 30 5 0 19 10 15 147 2 0 17 1 0 44 30 28 35 0 1 4 0 3 189 0 2 209 0 13 66 5 4 78 1 3 16 4 8 31 1 0 83 1 3 338 chain 388995 chrX 155270560 + 102046383 102051157 L1PA8A 6298 - 7 4781 10486 37 12 0 64 1 0 293 0 2 358 0 1 37 7 10 670 3 0 157 1 0 148 0 4 638 0 1 17 0 1 364 0 1 48 0 5 165 0 2 324 0 17 159 6 10 138 0 3 102 4 0 14 16 1 37 0 5 63 11 6 558 11 7 202 9 5 100 chain 106034 chrX 155270560 + 102056460 102057728 L1P3 4156 - 17 1286 35248 24 2 1 7 2 0 562 0 4 47 2 0 161 1 0 431 1 0 15 0 4 13 chain 7301 chrX 155270560 + 102057737 102057821 L1PA8 5853 + 5769 5853 175438 84 chain 86095 chrX 155270560 + 102058249 102059559 L1PB1 5432 - 12 1208 41121 16 1 0 13 1 0 21 1 0 27 2 0 11 1 0 5 2 0 19 3 0 10 2 0 18 5 4 39 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 9 6 20 106 20 244 1 3 225 2 0 56 12 9 337 chain 98225 chrX 155270560 + 102065892 102066951 L1PA2 6032 - 0 1059 37231 1059 chain 2512 chrX 155270560 + 102066987 102067040 L1MD 993 - 331 383 232980 16 15 14 22 chain 26756 chrX 155270560 + 102072131 102072494 THE1A 353 - 0 353 97140 118 2 1 5 0 1 118 1 0 83 4 0 3 5 0 24 chain 128589 chrX 155270560 + 102072499 102074058 THE1A-int 1579 - 5 1579 28420 279 3 2 295 0 4 255 0 9 555 3 6 169 chain 79040 chrX 155270560 + 102082696 102083573 L1PA4 6152 - 9 891 44034 130 0 7 293 2 0 452 chain 397186 chrX 155270560 + 102108168 102114127 L1PB1 5432 - 10 5420 10191 18 1 0 13 1 0 16 0 1 4 2 0 24 2 0 15 7 4 19 16 6 6 1 0 16 1 0 8 0 7 10 0 3 10 6 5 16 2 1 53 17 11 9 1 0 9 1 0 24 1 0 8 10 3 197 0 1 92 2 1 44 9 6 47 0 1 4 4 5 79 5 0 128 12 13 62 1 2 116 0 1 172 150 6 164 1 0 228 3 1 29 0 5 157 0 3 90 0 3 5 3 0 233 0 86 60 304 0 55 0 1 514 4 0 328 11 6 119 174 19 90 0 4 244 0 1 254 20 20 638 6 7 144 9 1 46 1 0 4 0 1 82 0 3 74 0 1 4 2 1 210 13 5 15 8 18 134 1 0 7 chain 13100 chrX 155270560 + 102111959 102112117 L1PB1 5432 - 4015 4176 147846 7 0 3 151 chain 140786 chrX 155270560 + 102122929 102124942 L1P2 5180 - 2845 4754 26023 817 0 1 57 12 14 396 1 0 5 0 1 143 0 4 93 3 18 47 21 0 169 83 8 38 47 36 41 19 0 21 chain 540429 chrX 155270560 + 102126118 102132249 L1PA4 6152 - 12 6146 2749 1995 0 1 1255 1 0 311 0 3 1341 0 2 21 29 28 24 9 12 510 3 0 61 1 0 570 chain 31469 chrX 155270560 + 102136728 102137079 L1PA4 6152 + 5797 6151 81691 24 0 3 327 chain 31810 chrX 155270560 + 102153408 102153812 MLT2A1 477 - 74 477 81151 8 8 0 10 0 2 209 1 5 26 0 1 142 chain 236943 chrX 155270560 + 102168227 102171555 L1PB1 5432 + 1419 5422 16933 36 0 2 257 0 2 81 7 8 693 4 0 84 0 5 181 50 80 38 0 3 61 2 1 62 0 1 154 0 1 31 0 1 41 1 0 92 2 484 42 0 115 41 11 92 56 0 4 175 5 11 255 0 4 14 3 0 5 14 4 187 12 11 180 0 2 87 33 14 40 6 2 9 2 0 51 1 0 17 0 1 45 1 0 14 2 0 6 15 6 16 43 38 8 1 0 22 2 1 11 1 0 18 chain 89701 chrX 155270560 + 102176170 102177497 L1PA15 4387 - 32 1351 39748 26 5 0 11 3 1 47 17 14 39 14 9 23 1 0 46 41 39 167 1 0 40 5 3 65 1 0 13 0 3 301 14 23 168 0 1 171 0 3 5 3 0 11 0 1 89 chain 25525 chrX 155270560 + 102180449 102180876 L1MA2 4263 - 151 569 102117 7 1 0 26 4 5 16 7 0 74 19 18 8 1 0 12 0 1 31 2 0 5 3 5 46 0 1 51 3 0 63 4 5 44 chain 5005 chrX 155270560 + 102211187 102211301 L1PA15 4387 - 2984 3084 195088 34 18 18 21 14 0 27 chain 124155 chrX 155270560 + 102273531 102275384 L1PA10 4194 - 1000 2780 29648 34 0 1 25 1 0 178 9 5 133 4 3 121 197 153 145 0 1 4 2 1 437 0 2 157 28 1 339 0 1 39 chain 556565 chrX 155270560 + 102275390 102281543 L1PA3long 6157 - 0 6157 664 3574 0 1 998 0 3 839 1 0 324 0 1 417 chain 32833 chrX 155270560 + 102281551 102281946 L1PA7 6471 - 49 446 79487 101 6 0 7 0 7 175 0 1 106 chain 165899 chrX 155270560 + 102282388 102284395 L1PA6 6164 + 4136 6162 22527 13 0 9 377 0 1 113 7 17 11 2 3 635 1 0 89 1 0 294 0 2 6 2 0 456 chain 19502 chrX 155270560 + 102293042 102293297 AluSc 308 - 17 273 128650 140 11 12 104 chain 36601 chrX 155270560 + 102293612 102294102 L1PA8 5853 - 0 486 74097 92 3 2 15 1 0 64 1 0 72 2 0 43 2 1 170 7 9 18 chain 49321 chrX 155270560 + 102300819 102301509 L1MA3 4352 - 1469 2156 59503 159 2 0 7 2 3 212 10 11 134 6 5 26 1 0 14 1 0 116 chain 22612 chrX 155270560 + 102306179 102306640 LTR21A 479 - 0 479 117530 48 94 123 49 0 3 5 0 2 102 0 4 61 61 41 41 chain 24034 chrX 155270560 + 102324882 102325209 Tigger1 2417 + 1741 2067 110145 246 0 1 57 12 10 12 chain 44476 chrX 155270560 + 102331410 102331977 PRIMA4_LTR 623 + 0 623 63606 87 0 1 100 4 0 140 0 57 58 1 0 77 1 4 99 chain 20327 chrX 155270560 + 102341074 102341310 AluY 311 + 8 254 126151 90 0 10 146 chain 38647 chrX 155270560 + 102348859 102349356 LTR12C 1709 + 0 534 71228 286 9 10 42 3 46 77 4 0 7 3 0 66 chain 64942 chrX 155270560 + 102351326 102352099 LTR17 781 + 0 773 50597 121 0 9 130 0 1 38 10 0 28 0 1 62 1 0 383 chain 46281 chrX 155270560 + 102356486 102357041 LTR19B 566 + 0 566 61787 295 11 0 213 6 28 30 chain 129849 chrX 155270560 + 102358776 102360246 SVA_D 2077 - 3 2064 28125 6 5 0 618 0 353 54 0 1 4 2 4 47 0 84 137 0 156 597 chain 138456 chrX 155270560 + 102361210 102362842 LTR12C 1709 - 0 1709 26399 481 0 4 104 2 0 8 1 0 108 0 78 89 1 0 259 6 5 573 chain 8370 chrX 155270560 + 102363902 102364004 LTR54 533 - 427 529 169021 102 chain 90553 chrX 155270560 + 102364106 102365272 MER11A 1151 - 0 1151 39453 66 1 0 182 24 0 11 2 32 448 0 1 22 0 1 37 37 0 46 0 11 60 0 4 230 chain 11930 chrX 155270560 + 102365297 102365451 MER50B 698 + 0 146 152483 129 8 0 17 chain 10141 chrX 155270560 + 102367569 102367739 MER4D1 891 + 283 449 159896 25 28 23 32 0 3 44 1 0 20 1 0 19 chain 52997 chrX 155270560 + 102370025 102370728 LTR17 781 - 0 781 57017 12 0 1 31 0 22 112 0 49 11 0 11 11 7 6 42 3 0 145 2 1 327 chain 68101 chrX 155270560 + 102371107 102371953 LTR12C 1709 - 0 940 49202 84 1 0 68 0 101 226 18 11 101 3 1 5 1 0 275 1 0 30 0 5 33 chain 3289 chrX 155270560 + 102371953 102372553 LTR12C 1709 - 1059 1709 54031 39 7 8 135 7 6 81 0 43 34 4 13 147 2 0 144 chain 29227 chrX 155270560 + 102374605 102374949 LTR14A 344 - 0 344 87925 344 chain 35151 chrX 155270560 + 102374956 102375488 L1PB3 3668 - 802 1282 75993 94 6 4 102 1 0 84 50 0 13 3 4 179 chain 538761 chrX 155270560 + 102386335 102392470 L1PA4 6152 + 12 6152 3030 610 0 1 1696 0 1 3718 15 18 96 chain 6866 chrX 155270560 + 102411053 102411139 HY4 93 - 6 93 178447 22 0 1 64 chain 3271 chrX 155270560 + 102426541 102426580 MER74B 573 + 228 267 219587 39 chain 23608 chrX 155270560 + 102441624 102441898 AluY 311 + 2 277 112527 130 0 1 144 chain 104430 chrX 155270560 + 102453466 102454659 L1PA5 6144 - 12 1205 35633 1193 chain 5992 chrX 155270560 + 102466659 102466743 MER21A 919 - 765 846 185317 35 2 0 31 1 0 15 chain 24666 chrX 155270560 + 102469149 102469418 AluY 311 + 0 276 106629 8 0 6 118 0 1 143 chain 5114 chrX 155270560 + 102474898 102474987 MLT1A0 366 + 262 352 193931 49 15 16 25 chain 40785 chrX 155270560 + 102491479 102492341 MLT2A2 560 - 0 560 68197 70 317 2 25 0 3 46 3 14 220 13 12 168 chain 38277 chrX 155270560 + 102493173 102493594 L1PA3long 6157 + 5734 6157 71742 274 0 2 147 chain 37995 chrX 155270560 + 102518540 102519072 L1PA8 5853 + 5329 5853 72138 117 10 11 107 1 0 46 2 0 68 14 12 4 0 1 46 1 0 6 1 0 15 3 0 91 chain 544267 chrX 155270560 + 102537426 102543573 L1PA4 6152 + 1 6152 2175 71 11 3 563 2 1 1327 0 1 587 0 1 695 0 3 160 0 4 763 0 1 1905 3 1 54 0 5 6 chain 15581 chrX 155270560 + 102543757 102543954 L1P4 1494 - 1050 1248 139637 90 0 1 107 chain 15678 chrX 155270560 + 102552527 102552961 MER66B 489 - 0 442 139341 67 2 1 10 86 93 25 6 5 35 98 99 70 5 7 30 chain 4490 chrX 155270560 + 102554886 102554935 MLT2A1 477 + 428 477 200908 49 chain 11653 chrX 155270560 + 102560523 102560678 L1PA7 6471 - 6 153 153678 7 8 0 140 chain 20960 chrX 155270560 + 102560678 102560907 L1PA6 6164 + 5686 5915 124064 229 chain 25286 chrX 155270560 + 102571493 102571790 AluY 311 + 0 308 103283 85 0 5 42 0 1 144 0 5 26 chain 151811 chrX 155270560 + 102575099 102577334 L1MA2 4263 - 150 2410 24362 8 1 0 35 0 1 11 7 0 15 0 3 60 1 0 15 11 9 93 1 0 55 15 12 134 1 0 77 5 1 18 1 0 606 0 24 26 4 5 96 1 35 77 5 0 44 0 2 5 1 0 4 0 1 269 5 0 48 1 0 86 1 0 76 4 5 21 45 45 29 1 0 45 8 7 40 9 0 15 1 0 66 8 12 24 chain 19392 chrX 155270560 + 102580842 102581206 L1MB3 1562 - 7 339 128968 22 10 9 80 61 31 55 14 13 122 chain 27991 chrX 155270560 + 102604703 102605120 LTR24 460 - 0 460 93028 77 5 6 93 4 7 18 19 59 63 0 3 14 4 0 120 chain 101171 chrX 155270560 + 102608174 102609335 L1PA6 6164 - 8 1175 36472 93 3 4 233 1 0 318 0 2 185 1 5 327 chain 21451 chrX 155270560 + 102633117 102633388 AluSc8 310 + 25 296 122332 93 5 0 14 0 3 141 1 3 17 chain 51759 chrX 155270560 + 102635913 102636476 L1PA3long 6157 - 0 563 57783 563 chain 33745 chrX 155270560 + 102636476 102636843 L1PA3long 6157 + 5199 5567 78026 355 0 1 12 chain 44499 chrX 155270560 + 102639963 102640515 LTR6B 557 - 0 557 63579 22 0 1 36 0 2 94 8 10 32 0 1 312 1 0 47 chain 4719 chrX 155270560 + 102642788 102642873 L1MA4 2864 - 654 738 198284 20 21 20 44 chain 36738 chrX 155270560 + 102643640 102644090 MER4A1 472 + 0 472 73899 13 0 1 212 1 22 224 chain 15500 chrX 155270560 + 102654860 102655102 Tigger3a 397 - 60 370 139896 106 7 9 46 0 17 17 18 67 48 chain 8540 chrX 155270560 + 102668634 102668740 L1PREC2 3366 - 975 1081 168065 106 chain 258135 chrX 155270560 + 102686214 102689965 HERVH-int 3825 - 259 3825 15803 312 22 24 33 1 12 259 0 1 420 12 15 395 19 23 641 9 0 208 16 1 444 186 0 28 380 386 31 1 0 312 1 0 21 chain 31890 chrX 155270560 + 102689967 102690366 LTR7 482 - 0 482 81024 176 0 1 20 0 31 29 0 1 73 0 50 101 chain 7264 chrX 155270560 + 102692858 102692982 MER4B 649 + 121 296 175693 19 26 77 79 chain 5322 chrX 155270560 + 102693643 102693711 MER4D1 891 - 7 74 191809 63 1 0 4 chain 113664 chrX 155270560 + 102702522 102704481 L1PB2 3958 - 120 1795 33183 34 25 24 5 1 0 15 11 9 47 0 4 17 0 11 55 1 0 72 1 0 93 4 0 13 2 0 62 4 0 16 0 3 52 3 1 41 6 7 4 1 0 18 1 6 253 0 1 51 1 0 19 1 0 158 321 7 23 0 3 26 0 3 191 14 4 46 0 1 16 1 4 158 3 29 73 chain 548106 chrX 155270560 + 102709486 102715599 L1PA4 6152 - 12 6144 1693 3833 1 2 88 0 1 901 0 1 745 0 2 410 1 15 134 chain 44234 chrX 155270560 + 102724799 102725335 LTR14 556 - 0 556 63907 91 1 0 134 0 10 14 0 11 296 chain 28551 chrX 155270560 + 102736610 102737477 Tigger3b 1229 - 10 590 90958 33 69 81 120 10 13 18 331 0 84 0 12 8 11 7 29 0 2 34 0 20 11 11 9 25 1 2 72 chain 20073 chrX 155270560 + 102744582 102744804 L1PA2 6032 - 3 231 126904 14 0 6 208 chain 123981 chrX 155270560 + 102748657 102750364 L1MA2 4263 - 149 1859 29709 10 1 0 31 23 16 92 11 9 66 0 1 26 1 0 55 3 0 146 1 0 71 20 18 190 1 4 56 6 12 77 1 0 79 7 15 111 0 1 118 1 6 257 7 6 22 4 0 95 0 2 118 chain 21290 chrX 155270560 + 102759474 102759739 AluSz6 309 - 34 299 122902 265 chain 26391 chrX 155270560 + 102761866 102762163 L1PA8A 6298 - 7 306 98447 144 0 2 153 chain 38898 chrX 155270560 + 102765999 102766779 L1PA7 6471 + 6000 6469 70869 98 0 2 37 318 0 183 0 1 81 0 4 63 chain 4612 chrX 155270560 + 102766779 102766846 MLT1C 463 + 84 152 199487 35 4 5 28 chain 11173 chrX 155270560 + 102774120 102774254 L1PA7 6471 - 5 138 155547 14 1 0 119 chain 3550 chrX 155270560 + 102782213 102782257 MER53 195 - 151 195 214538 44 chain 4296 chrX 155270560 + 102812206 102812287 MER53 195 - 28 149 203275 41 19 59 21 chain 185088 chrX 155270560 + 102835702 102838206 L1PA11 4918 + 2052 4559 20495 193 0 4 32 5 0 9 0 10 28 0 1 35 0 1 170 16 6 87 1 0 91 1 0 403 3 1 398 12 0 15 0 1 542 1 0 28 3 32 68 6 8 79 11 13 48 0 1 39 1 0 11 3 1 23 0 4 38 6 4 12 1 0 20 4 0 9 10 5 11 10 6 15 1 0 5 chain 34143 chrX 155270560 + 102847102 102847519 L1PA7 6471 - 1 421 77421 12 1 3 133 0 1 271 chain 38103 chrX 155270560 + 102850124 102850591 MER9a3 513 + 44 513 71976 67 0 1 146 1 0 73 0 1 101 4 5 75 chain 35203 chrX 155270560 + 102869241 102869758 MLT2A2 560 + 0 559 75916 165 54 53 90 7 39 59 0 11 142 chain 43295 chrX 155270560 + 102904439 102905091 L1MA2 4263 + 3465 4105 65058 37 1 0 82 4 1 77 1 0 42 1 6 80 13 10 156 21 19 83 7 0 47 chain 14680 chrX 155270560 + 102911104 102911295 MSTA 426 + 213 404 142326 36 3 1 68 0 2 84 chain 11204 chrX 155270560 + 102914442 102914588 MSTA 426 + 0 195 155404 96 0 49 50 chain 13643 chrX 155270560 + 102916702 102916913 MER66A 478 - 131 375 145808 68 17 19 81 0 33 32 2 0 11 chain 14301 chrX 155270560 + 102935530 102935806 Tigger4b 360 - 0 329 143561 51 1 17 17 3 6 4 1 0 69 5 4 28 16 49 23 20 23 38 chain 2627 chrX 155270560 + 102939729 102939801 MIR 256 - 163 251 231331 16 4 7 20 17 30 15 chain 14542 chrX 155270560 + 102958010 102958263 MER50B 698 - 130 368 142749 31 0 1 21 37 41 44 20 0 100 chain 25121 chrX 155270560 + 102968023 102968313 AluSp 311 - 17 307 104169 290 chain 4112 chrX 155270560 + 102969790 102969881 MER20 218 + 54 143 205748 16 32 30 43 chain 259878 chrX 155270560 + 103018447 103021857 HERVH-int 3825 - 259 3825 15709 268 1 0 283 1 0 26 1 4 84 0 1 466 21 20 5 0 1 206 0 1 106 4 9 538 1 2 113 10 1 89 4 9 43 1 0 5 0 1 21 0 1 21 21 6 455 1 0 30 21 192 11 0 1 17 13 0 7 3 8 30 24 28 37 11 10 66 7 6 338 chain 3352 chrX 155270560 + 103027174 103027256 MER81 114 + 37 114 218010 35 13 15 13 9 2 12 chain 3378 chrX 155270560 + 103063190 103063231 MIR 256 + 119 160 217527 41 chain 328323 chrX 155270560 + 103068483 103072506 L1PA7 6471 + 2440 6457 12266 201 26 9 1025 0 1 73 0 1 86 1 0 157 4 0 290 0 9 480 0 3 845 2 1 81 0 2 604 2 3 146 chain 4301 chrX 155270560 + 103097040 103097093 Charlie4z 170 + 117 170 203206 53 chain 224074 chrX 155270560 + 103106429 103109003 L1PA5 6144 + 2914 6142 17650 164 3 664 1615 1 0 453 0 1 195 8 1 135 chain 40864 chrX 155270560 + 103113442 103113904 LTR2 463 + 0 463 68075 80 0 1 382 chain 514648 chrX 155270560 + 103122623 103128291 L1PA3long 6157 + 439 6149 5710 43 0 31 54 0 4 84 0 1 30 0 3 1140 3 2 376 0 2 575 0 1 2220 0 1 1143 chain 25903 chrX 155270560 + 103129034 103129316 L1PA4 6152 + 5869 6151 100420 282 chain 136580 chrX 155270560 + 103139856 103141468 L1PA6 6164 - 8 1635 26723 552 0 8 150 0 2 128 0 5 782 chain 32620 chrX 155270560 + 103146056 103146423 L1PA4 6152 - 16 384 79816 139 0 1 228 chain 556445 chrX 155270560 + 103146427 103152454 L1PA2 6032 - 0 6028 677 4919 0 1 1108 chain 18041 chrX 155270560 + 103160388 103160601 L1PA4 6152 - 0 214 132756 8 0 1 205 chain 151780 chrX 155270560 + 103176803 103178527 L1PA5 6144 - 13 1744 24365 136 0 1 661 0 4 207 6 7 710 0 1 4 chain 13167 chrX 155270560 + 103184450 103184592 L1PA3long 6157 - 0 142 147592 142 chain 523491 chrX 155270560 + 103188917 103195741 L1PA7 6471 - 2 6468 4810 765 7 5 74 3 0 8 7 10 136 0 1 273 0 4 153 0 3 60 315 0 24 1 0 281 0 4 111 0 1 380 23 1 343 1 3 343 3 2 385 0 3 113 0 1 4 1 3 174 0 5 157 1 2 21 7 11 222 0 1 605 6 5 4 0 1 179 1 0 22 0 1 347 0 4 565 1 0 23 10 9 208 53 2 404 chain 3408 chrX 155270560 + 103201709 103201747 L1ME3A 1206 + 977 1015 216951 38 chain 27397 chrX 155270560 + 103202446 103202757 L1PA7 6471 + 6143 6454 94980 311 chain 235140 chrX 155270560 + 103210045 103213481 L1PA13 3608 + 86 3483 17021 4 1 0 19 6 4 23 4 1 27 71 54 71 8 6 121 1 0 12 20 17 16 6 2 19 1 0 15 6 4 15 6 4 14 1 0 97 2 0 646 0 9 106 6 7 111 11 14 70 30 11 343 1 0 104 2 0 86 0 1 74 9 13 34 1 2 72 0 1 73 26 15 190 0 1 194 1 0 317 1 0 6 0 1 28 1 0 14 8 11 11 12 2 29 3 15 31 2 0 32 6 0 30 1 0 27 0 1 27 0 6 44 7 21 5 1 0 17 chain 75367 chrX 155270560 + 103223820 103224813 L1PA8 5853 - 1 989 45834 92 1 0 19 2 1 39 1 0 22 1 0 71 8 6 40 2 1 45 1 0 338 0 1 86 2 0 76 6 9 128 0 1 13 chain 20912 chrX 155270560 + 103227447 103227735 AluSc 308 - 15 307 124237 14 0 1 127 23 25 104 0 1 20 chain 216617 chrX 155270560 + 103243854 103246516 L1PA7 6471 + 3618 6470 18076 299 0 1 38 1 0 53 4 0 1033 0 14 24 0 1 195 24 199 146 1 0 79 0 2 752 1 4 12 chain 101253 chrX 155270560 + 103277777 103278951 L1PA5 6144 + 4970 6144 36450 270 4 5 49 1 0 850 chain 559996 chrX 155270560 + 103281434 103287465 L1PA2 6032 - 0 6031 357 6031 chain 75084 chrX 155270560 + 103289153 103290146 L1PA8 5853 - 0 989 45976 93 1 0 19 2 1 61 5 4 66 3 1 44 1 0 49 1 0 36 0 1 394 0 2 59 1 2 12 5 4 141 chain 13385 chrX 155270560 + 103303993 103304150 L1P3 4156 - 384 541 146763 157 chain 18038 chrX 155270560 + 103310952 103311214 MER1A 529 - 0 261 132767 58 14 15 65 4 1 107 0 1 14 chain 20912 chrX 155270560 + 103320266 103320554 AluSc 308 + 1 293 124236 21 0 1 103 23 25 127 0 1 14 chain 75828 chrX 155270560 + 103323192 103324185 L1PA8 5853 + 4864 5852 45584 13 0 1 128 6 9 76 2 0 86 0 1 338 1 0 45 2 1 40 8 6 71 1 0 22 1 0 42 1 0 17 1 0 92 chain 220658 chrX 155270560 + 103324334 103326748 L1PA2 6032 - 0 2414 17839 5 2 0 1793 0 2 614 chain 88558 chrX 155270560 + 103326748 103328071 L1PA13 3608 - 2211 3522 40073 2 1 0 110 0 9 61 0 8 381 0 9 186 2 0 99 1 0 16 2 0 18 2 0 17 1 0 18 4 0 9 1 0 9 2 0 16 1 0 8 2 3 127 2 0 73 48 30 10 0 5 8 14 13 14 5 2 23 6 4 19 1 0 4 chain 27178 chrX 155270560 + 103335952 103336268 L1PA7 6471 - 2 319 95670 252 0 1 64 chain 24000 chrX 155270560 + 103347536 103347840 AluSp 311 + 0 300 110328 65 3 0 77 3 0 7 2 5 90 1 0 56 chain 72020 chrX 155270560 + 103368254 103369112 L1PA7 6471 - 5 867 47470 7 3 0 44 0 4 792 1 4 11 chain 416521 chrX 155270560 + 103387651 103393141 L1PA3long 6157 + 871 6156 9623 41 5 24 22 23 0 163 188 180 366 5 8 111 22 22 243 0 1 136 0 1 173 229 12 186 0 1 11 0 4 468 11 13 132 1 0 82 0 2 420 0 2 201 0 2 459 0 4 687 0 3 1105 chain 7194 chrX 155270560 + 103389183 103389273 L1P3 4156 - 4061 4152 176108 22 0 1 68 chain 32487 chrX 155270560 + 103393141 103393521 L1PA6 6164 + 5782 6162 80048 380 chain 34388 chrX 155270560 + 103396768 103397143 L1PA4 6152 - 9 384 77079 375 chain 4255 chrX 155270560 + 103440822 103440871 MER3 215 - 166 215 203801 49 chain 3912 chrX 155270560 + 103448146 103448272 MER5A1 166 - 44 166 208675 35 51 53 6 3 0 21 3 0 7 chain 21547 chrX 155270560 + 103472377 103472741 THE1B 368 + 0 356 121977 12 3 1 30 6 7 61 23 24 34 30 23 101 1 0 63 chain 5484 chrX 155270560 + 103498536 103498645 MER96B 391 - 55 160 190184 44 0 1 4 3 0 19 22 20 17 chain 5178 chrX 155270560 + 103507514 103507580 MER41B 635 - 88 154 193261 20 1 0 4 0 1 41 chain 4997 chrX 155270560 + 103553331 103553391 Tigger2 2703 + 2476 2536 195176 60 chain 3630 chrX 155270560 + 103595557 103595599 MIR 256 + 108 150 213146 42 chain 534863 chrX 155270560 + 103605326 103611468 L1PA5 6144 - 4 6141 3610 153 1 6 360 20 13 309 1 5 2027 0 1 68 1 2 887 1 0 325 0 1 146 1 0 128 1 0 410 0 1 819 7 0 195 1 0 281 chain 7648 chrX 155270560 + 103615181 103615284 MER33 330 - 114 219 173239 64 0 4 21 2 0 16 chain 13346 chrX 155270560 + 103620979 103621157 Tigger2 2703 + 2292 2480 146908 37 0 9 69 0 6 6 6 0 48 0 1 12 chain 24883 chrX 155270560 + 103633204 103633481 AluY 311 + 16 294 105446 110 0 1 167 chain 31077 chrX 155270560 + 103645561 103645932 L1PA7 6471 - 2 379 82385 10 2 0 50 0 2 179 0 6 130 chain 451375 chrX 155270560 + 103648806 103654047 L1PA4 6152 - 1 6150 8722 153 1 2 134 16 915 977 15 1 28 0 1 1145 3 1 879 1 2 203 1 0 102 0 8 314 0 1 1140 6 20 123 chain 45872 chrX 155270560 + 103661576 103662075 L1PA2 6032 + 5533 6032 62150 499 chain 153735 chrX 155270560 + 103700531 103702343 L1PA7 6471 + 4636 6449 24119 280 1 0 696 0 1 285 4 5 546 chain 30893 chrX 155270560 + 103705173 103705547 MER11A 1151 + 693 1151 82691 112 2 1 29 0 84 223 0 1 8 chain 6932 chrX 155270560 + 103707879 103707985 MER4A1_ 611 + 0 107 177951 22 9 8 69 0 2 6 chain 36528 chrX 155270560 + 103709748 103710220 L1PA8 5853 - 5 470 74203 50 1 0 38 1 0 16 5 4 50 1 0 11 2 1 41 0 1 27 2 0 45 1 0 181 chain 14297 chrX 155270560 + 103710538 103710825 L1PB1 5432 - 8 270 143571 4 1 0 18 1 0 11 1 0 21 1 0 24 2 0 14 8 5 16 9 0 12 0 6 11 10 1 44 1 0 14 8 7 49 2 0 5 chain 24780 chrX 155270560 + 103750664 103750946 L1PA4 6152 - 9 290 105994 148 1 0 133 chain 54327 chrX 155270560 + 103756948 103757671 L1PA8 5853 - 6 721 56146 87 1 0 19 2 1 50 14 12 66 6 4 44 1 0 49 1 0 383 chain 3204 chrX 155270560 + 103763792 103763829 L1MDa 1598 - 168 205 220874 37 chain 93648 chrX 155270560 + 103763977 103765004 L1PA2 6032 - 0 1028 38458 150 0 1 877 chain 29138 chrX 155270560 + 103765659 103766132 L1MA2 4263 - 150 628 88372 8 1 0 36 34 26 78 2 1 5 0 1 46 1 21 29 2 0 56 16 13 62 1 0 4 0 1 63 1 0 28 chain 3798 chrX 155270560 + 103776627 103777133 L1PA3long 6157 - 1 507 28657 506 chain 4516 chrX 155270560 + 103782394 103782447 L1MA8 2339 + 2011 2064 200603 53 chain 225966 chrX 155270560 + 103784207 103786881 L1PA4 6152 - 1 2715 17532 4 0 1 1359 2 0 240 65 105 188 1 0 52 0 2 763 chain 63806 chrX 155270560 + 103786883 103787632 L1PA7 6471 + 5722 6469 51095 736 2 0 11 chain 9472 chrX 155270560 + 103792373 103793635 L1PA3long 6157 - 1837 3100 28657 81 5 6 686 0 1 357 1 0 132 chain 166762 chrX 155270560 + 103793635 103795462 L1PA3long 6157 + 4331 6157 22425 1677 1 0 149 chain 23320 chrX 155270560 + 103799831 103800214 THE1D 372 - 0 372 114095 148 43 46 6 0 4 23 0 1 58 29 10 76 chain 164685 chrX 155270560 + 103803794 103805655 L1PA4 6152 - 0 1877 22704 11 1 4 48 0 8 306 0 13 737 1 0 288 7 0 462 chain 8865 chrX 155270560 + 103823965 103824130 L1PA15 4387 + 4200 4350 166304 10 4 0 7 1 0 49 10 7 41 3 1 12 6 1 22 chain 8358 chrX 155270560 + 103833724 103833843 MER85 139 - 3 132 169083 20 2 0 7 1 13 89 chain 500929 chrX 155270560 + 103846718 103853029 L1PA7 6471 + 1 6430 6790 52 11 12 178 0 1 6 0 7 154 3 1 61 1 0 104 3 0 165 0 5 20 0 1 441 1 5 17 0 4 17 0 19 517 2 1 827 29 16 110 9 10 87 0 2 1157 1 0 207 0 1 279 1 2 138 0 13 25 0 8 173 0 61 44 1 0 506 1 3 81 1 0 4 0 1 21 5 6 45 1 4 160 3 7 510 1 2 131 chain 141527 chrX 155270560 + 103853029 103854777 L1P2 5180 - 2539 4274 25880 314 14 0 33 1 0 164 2 0 414 1 0 132 1 4 28 0 1 318 0 1 326 chain 33013 chrX 155270560 + 103854789 103855160 L1P1 4361 + 3959 4328 79193 191 1 0 155 1 0 23 chain 18038 chrX 155270560 + 103871969 103872173 L1PA4 6152 + 5946 6151 132766 92 0 1 112 chain 538747 chrX 155270560 + 103875530 103881670 L1PA4 6152 - 9 6150 3034 144 1 2 743 4 2 1053 0 2 1020 1 0 6 1 0 969 0 2 1662 4 0 7 1 5 524 chain 3047 chrX 155270560 + 103896637 103896669 LTR16E1 515 - 53 85 224088 32 chain 221039 chrX 155270560 + 103899291 103901898 L1PA6 6164 - 1436 4044 17814 195 12 9 55 0 3 370 0 2 301 0 1 96 1 0 391 1 0 112 16 16 1057 chain 116660 chrX 155270560 + 103901906 103903302 L1PA6 6164 + 4756 6161 32241 17 0 1 4 1 0 358 0 1 180 0 6 413 0 2 423 chain 538536 chrX 155270560 + 103916780 103922803 L1PA2 6032 - 2 6032 3064 56 7 0 92 7 16 2135 0 2 465 1 0 2136 1 4 759 0 1 108 2 1 182 1 2 71 chain 3401 chrX 155270560 + 103923448 103923488 L1PA7 6471 + 6253 6293 217058 40 chain 13651 chrX 155270560 + 103923492 103923666 L1PA7 6471 + 6298 6469 145775 156 3 0 15 chain 13934 chrX 155270560 + 103930300 103930459 L1PA5 6144 + 5983 6142 144805 159 chain 11542 chrX 155270560 + 103931837 103932244 MSTB1 431 - 0 413 154133 15 5 6 42 1 0 17 139 145 20 1 0 42 54 53 25 11 13 35 chain 60464 chrX 155270560 + 103937041 103937730 L1PA4 6152 - 2 704 52599 13 0 6 226 0 1 4 1 7 445 chain 4044 chrX 155270560 + 103940405 103940482 MIR 256 - 37 109 206735 13 19 14 45 chain 12971 chrX 155270560 + 103955755 103955938 Tigger3c 601 + 339 526 148350 132 8 10 14 0 2 29 chain 20741 chrX 155270560 + 103958699 103958974 L1PREC2 3366 - 1036 1308 124813 15 2 1 221 7 5 30 chain 66704 chrX 155270560 + 103962295 103963053 L1PA4 6152 - 0 767 49784 6 0 2 132 4 10 186 1 2 429 chain 11855 chrX 155270560 + 103969015 103969147 L1PA4 6152 + 6011 6143 152812 132 chain 154796 chrX 155270560 + 103969571 103971459 L1PA7 6471 - 6 1897 24001 6 2 0 145 1 2 180 0 1 508 3 0 7 0 2 410 1 0 35 14 21 192 3 1 381 chain 106838 chrX 155270560 + 103974914 103976086 L1PA3long 6157 - 8 1186 35022 140 0 1 700 0 5 332 chain 107042 chrX 155270560 + 104006178 104008207 THE1C-int 1605 - 10 1590 34957 168 1 0 71 2 0 8 2 1 48 510 2 95 0 5 179 9 11 131 31 63 49 49 59 185 1 0 8 0 1 22 1 0 17 17 27 270 0 4 33 0 1 122 chain 22481 chrX 155270560 + 104008244 104008568 THE1C 375 - 21 375 118104 4 1 0 37 0 36 91 1 2 53 9 6 48 3 0 77 chain 104981 chrX 155270560 + 104008568 104010024 L1MA1 4479 - 773 2197 35503 193 2 0 124 3 0 124 4 0 14 1 0 60 17 13 20 2 0 173 2 0 27 11 10 82 2 1 61 1 0 33 3 1 102 2 1 68 7 12 105 0 3 54 17 1 142 chain 8793 chrX 155270560 + 104049904 104050022 MER85 139 + 6 139 166686 84 1 12 7 0 4 26 chain 54416 chrX 155270560 + 104053935 104054530 L1PA3long 6157 - 527 1121 56082 330 1 0 264 chain 52079 chrX 155270560 + 104054530 104055104 L1PA3long 6157 + 5583 6157 57575 574 chain 245693 chrX 155270560 + 104065925 104069592 L1PA7 6471 - 1 3031 16474 5 2 0 492 0 1 346 0 1 8 13 4 7 0 4 480 1 0 21 6 0 152 1 0 324 641 11 358 0 1 249 2 0 101 0 2 67 0 1 282 0 4 109 chain 57779 chrX 155270560 + 104067783 104068424 L1PA2 6032 - 3 646 54094 172 0 2 469 chain 269551 chrX 155270560 + 104070813 104074263 L1P3 4156 - 706 4151 15204 63 0 4 315 0 1 165 6 8 265 15 1 282 0 1 230 8 8 408 26 27 388 31 31 31 0 1 219 15 16 585 1 0 81 2 1 57 32 31 197 0 1 28 chain 437779 chrX 155270560 + 104081415 104087822 L1PA8 5853 - 0 5745 9107 93 1 0 19 2 1 31 37 34 67 2 0 23 5 17 4 1 0 381 0 1 91 1 2 80 2 0 529 5 6 134 0 1 179 0 3 370 357 0 11 0 5 130 0 1 8 16 5 34 0 1 147 2 0 363 0 23 81 0 1 699 0 4 22 327 0 532 8 7 354 0 1 218 0 1 441 0 1 23 46 40 9 0 4 51 0 2 242 77 66 9 0 3 7 6 4 4 1 0 125 chain 182307 chrX 155270560 + 104090879 104092921 L1PA5 6144 - 1 2048 20758 848 0 4 256 0 1 938 chain 19701 chrX 155270560 + 104109199 104109448 MLT2A2 560 + 1 249 128098 156 1 0 92 chain 36339 chrX 155270560 + 104109448 104109917 HERVL-int 5654 + 1867 2335 74452 113 1 0 65 0 6 106 12 6 172 chain 43952 chrX 155270560 + 104110141 104110687 MLT2A2 560 + 0 560 64262 310 1 0 96 0 11 15 0 3 54 0 1 70 chain 10930 chrX 155270560 + 104114247 104114371 L1PA4 6152 - 8 132 156486 124 chain 57276 chrX 155270560 + 104121427 104122062 L1PA3long 6157 - 15 650 54352 635 chain 11266 chrX 155270560 + 104122062 104122187 L1P1 4361 + 3568 3693 155167 125 chain 57368 chrX 155270560 + 104127139 104127824 LTR12_ 688 + 0 688 54305 94 0 2 46 1 2 23 1 0 340 4 5 176 chain 413955 chrX 155270560 + 104127852 104132841 HERV9-int 5642 + 0 4836 9701 248 4 5 181 5 7 354 1 0 215 85 0 82 80 0 14 3 0 582 0 1 639 1 0 288 0 1 1124 0 1 514 7 8 116 0 1 438 0 9 8 chain 526116 chrX 155270560 + 104134485 104140607 L1PA5 6144 - 3 6144 4579 329 0 1 85 0 1 1235 0 4 136 0 1 863 0 4 123 3 2 440 0 3 168 1 0 183 0 4 332 0 1 391 0 1 40 0 2 341 6 5 13 1 0 681 0 1 751 chain 45987 chrX 155270560 + 104141187 104141810 LTR12_ 688 + 13 688 62054 57 39 0 15 1 91 333 10 9 28 0 2 140 chain 539748 chrX 155270560 + 104148982 104155059 L1PA2 6032 - 4 6030 2858 7 4 0 2160 1 0 405 0 4 1964 40 0 710 7 6 236 20 12 267 1 0 255 chain 16353 chrX 155270560 + 104155062 104155261 L1PA7 6471 - 12 211 137326 199 chain 240509 chrX 155270560 + 104159249 104161935 L1PA3long 6157 - 0 2686 16741 149 0 1 782 3 1 928 0 1 824 chain 10144 chrX 155270560 + 104177840 104177957 L1PA6 6164 + 6045 6162 159875 117 chain 215138 chrX 155270560 + 104185410 104187890 L1PA5 6144 - 0 2516 18155 147 0 1 129 0 24 495 0 3 43 0 1 956 0 4 59 0 2 349 0 1 210 0 1 44 2 1 46 chain 27078 chrX 155270560 + 104190799 104191090 AluYb8 318 + 28 318 96009 104 1 0 186 chain 408802 chrX 155270560 + 104191102 104195882 L1PA3long 6157 - 4 6155 9839 3654 1 0 214 0 1582 169 4 0 206 207 0 174 0 1 151 chain 15895 chrX 155270560 + 104195380 104195557 AluYf4 310 - 3 180 138671 177 chain 112486 chrX 155270560 + 104253165 104254441 L1PA4 6152 + 4871 6151 33542 305 0 1 125 0 3 846 chain 246158 chrX 155270560 + 104259011 104262008 L1PA7 6471 - 14 3028 16434 4 0 1 137 1 0 341 1 0 4 9 10 332 0 3 194 2 0 451 0 1 1224 0 10 136 1 2 65 0 1 43 15 18 37 chain 65813 chrX 155270560 + 104271080 104272132 L1MA1 4479 + 3090 4136 50185 66 2 0 51 7 5 39 13 12 126 3 0 131 1 0 38 2 1 15 0 16 33 0 14 7 19 5 56 0 1 7 3 1 25 2 0 13 4 3 48 0 2 19 1 0 9 9 7 19 1 0 84 13 9 126 1 0 29 2 0 8 0 1 20 chain 535373 chrX 155270560 + 104273935 104280073 L1PA4 6152 - 1 6152 3540 842 0 4 25 0 3 636 0 3 1060 5 23 660 10 11 529 0 2 39 0 1 1479 17 0 258 1 0 125 0 1 87 1 0 47 2 1 315 chain 172868 chrX 155270560 + 104284267 104286196 L1PA3long 6157 - 1702 3637 21724 95 1 5 35 1 0 1050 0 3 747 chain 156243 chrX 155270560 + 104286197 104287920 L1PA3long 6157 + 4434 6157 23827 1723 chain 13161 chrX 155270560 + 104296484 104296660 L1PA8A 6298 + 6115 6291 147610 64 1 2 27 1 0 83 chain 17694 chrX 155270560 + 104297404 104297696 L1PA8 5853 - 0 289 133720 92 2 1 19 3 2 26 36 37 67 2 0 45 chain 7247 chrX 155270560 + 104297705 104297791 L1P3 4156 - 4065 4151 175784 86 chain 6087 chrX 155270560 + 104317336 104317602 L1PA7 6471 - 14 264 17693 175 25 9 66 chain 10281 chrX 155270560 + 104317603 104317720 L1PA7 6471 - 267 385 159230 4 0 1 113 chain 542883 chrX 155270560 + 104317730 104323831 L1PA4 6152 - 0 6121 2360 13 1 4 719 0 5 39 1 0 624 0 1 3313 2 1 15 17 22 159 0 1 88 0 6 692 0 1 418 chain 67366 chrX 155270560 + 104324155 104327099 L1PA7 6471 - 272 2947 17693 498 5 7 97 5 8 19 24 0 257 1 2 187 0 1 160 1 2 599 261 0 14 0 2 24 0 3 317 1 0 454 0 4 20 chain 15578 chrX 155270560 + 104344696 104344934 MER44A 345 + 79 314 139641 34 10 8 44 2 0 78 4 5 66 chain 8108 chrX 155270560 + 104360229 104360347 LTR12C 1709 - 623 781 170448 26 8 48 84 chain 26108 chrX 155270560 + 104362165 104362527 THE1C 375 + 12 375 99584 216 25 21 64 1 6 56 chain 40674 chrX 155270560 + 104387313 104387767 L1PA4 6152 - 1 456 68332 135 0 1 319 chain 71652 chrX 155270560 + 104387767 104388674 L1PA4 6152 + 5130 6143 47626 588 95 201 224 chain 18636 chrX 155270560 + 104396422 104396819 L1PB1 5432 + 5064 5420 131116 35 5 0 17 5 0 22 1 0 8 1 0 10 9 5 6 2 0 53 26 24 37 1 0 15 1 0 4 19 8 19 22 17 26 1 0 21 1 0 13 1 0 16 chain 66910 chrX 155270560 + 104398147 104399024 MER4D0 881 - 0 881 49678 39 4 0 40 0 2 246 0 10 115 1 0 14 2 3 4 1 0 22 4 0 274 1 2 110 chain 24829 chrX 155270560 + 104402744 104403058 AluY 311 + 2 299 105725 45 16 0 101 0 1 51 2 0 99 chain 37183 chrX 155270560 + 104421741 104422234 MER1A 529 + 30 529 73258 98 1 0 204 0 2 119 17 20 41 0 2 13 chain 7428 chrX 155270560 + 104424627 104424736 L1MA4A 3247 - 1417 1523 174592 26 2 0 9 0 1 21 2 0 49 chain 11536 chrX 155270560 + 104442776 104442972 L1PA15 4387 - 73 256 154165 16 4 0 28 6 3 45 13 10 5 2 0 22 1 0 54 chain 468153 chrX 155270560 + 104456976 104462787 L1PA8 5853 + 53 5847 8102 19 2 0 10 1 0 13 48 13 120 12 12 62 19 7 474 11 14 141 0 1 470 1 4 252 1 0 90 1 7 317 6 1 401 0 4 89 7 18 378 0 2 525 1 0 305 0 2 335 3 12 47 0 4 132 5 0 676 2 0 60 5 9 441 0 1 43 1 0 17 1 5 22 2 0 70 2 1 14 1 0 41 10 9 17 1 0 87 chain 23966 chrX 155270560 + 104477690 104477975 AluY 311 + 0 290 110535 30 0 5 255 chain 83739 chrX 155270560 + 104481530 104482515 L1PA5 6144 - 0 992 42019 253 1 0 114 1 4 90 1 0 311 0 2 75 0 4 139 chain 86421 chrX 155270560 + 104484291 104485482 MER57-int 2662 - 1349 2565 40997 80 2 1 141 25 22 30 0 3 14 0 1 4 11 10 188 2 0 32 0 3 319 0 4 109 0 11 17 1 0 11 2 0 46 15 27 96 1 3 33 1 0 11 chain 42340 chrX 155270560 + 104493260 104493888 L1MA2 4263 + 3498 4112 66218 58 11 10 14 8 6 76 1 0 146 3 0 147 1 0 9 2 1 93 7 0 17 1 4 26 1 0 7 chain 23065 chrX 155270560 + 104508722 104509083 THE1C 375 + 0 375 115327 87 0 1 91 57 70 126 chain 9989 chrX 155270560 + 104516538 104516653 L1P1 4361 - 33 147 160632 23 1 0 91 chain 28555 chrX 155270560 + 104516672 104516979 L1PA2 6032 + 5725 6032 90936 307 chain 37713 chrX 155270560 + 104517920 104518442 MER39B 650 + 0 542 72539 47 10 24 42 11 2 206 0 11 7 4 8 195 chain 134503 chrX 155270560 + 104524486 104526116 L1PA7 6471 + 4834 6466 27111 106 10 9 676 1 5 376 4 6 447 3 0 7 chain 17541 chrX 155270560 + 104560223 104560474 MLT2A1 477 - 2 281 134154 37 29 58 57 1 0 127 chain 116063 chrX 155270560 + 104577149 104578851 L1MA2 4263 + 2363 4054 32429 170 0 1 80 0 1 11 39 33 205 0 1 300 9 10 67 4 6 5 1 0 313 1 0 7 0 1 4 12 8 14 6 5 42 0 2 13 1 0 74 11 4 68 3 0 30 20 19 47 0 1 54 1 0 6 1 0 19 23 29 41 chain 33440 chrX 155270560 + 104586623 104586999 L1PA4 6152 + 5775 6151 78504 376 chain 87190 chrX 155270560 + 104595403 104596469 L1PA7 6471 + 5411 6468 40693 133 1 0 66 4 6 93 0 1 212 8 0 148 0 1 390 4 0 7 chain 148078 chrX 155270560 + 104597153 104598791 L1PA4 6152 - 545 2183 24866 688 1 2 288 1 0 660 chain 48266 chrX 155270560 + 104598791 104599329 L1PA4 6152 + 5603 6142 60267 407 0 1 131 chain 55666 chrX 155270560 + 104615248 104616138 L1PA15 4387 - 73 939 55329 37 23 20 40 1 0 9 4 0 23 1 0 55 1 0 26 1 0 17 0 1 9 17 2 130 38 40 13 3 1 68 0 4 9 2 0 259 5 4 99 chain 119089 chrX 155270560 + 104626484 104627792 L1PA4 6152 + 4834 6143 31374 945 0 1 363 chain 76239 chrX 155270560 + 104636008 104636826 L1PA3long 6157 + 5339 6157 45343 818 chain 33306 chrX 155270560 + 104641558 104642018 MER1A 529 + 59 522 78722 382 39 42 39 chain 148294 chrX 155270560 + 104666118 104668107 MER4-int 2692 - 7 2000 24846 155 1 2 51 15 4 170 8 9 8 1 0 264 1 2 53 0 3 17 0 2 90 1 0 243 5 14 145 1 0 328 28 15 191 0 2 100 20 33 62 1 0 30 chain 36570 chrX 155270560 + 104668755 104669206 MER4A1 472 - 0 472 74139 220 15 36 216 chain 7903 chrX 155270560 + 104679827 104679943 L1PA10 4194 - 44 157 171630 33 7 4 76 chain 57102 chrX 155270560 + 104688359 104689226 L1MA2 4263 - 190 1055 54467 15 7 0 15 1 9 76 1 0 37 0 3 5 12 9 94 4 1 142 9 8 62 16 13 18 1 0 12 5 6 158 0 1 151 7 11 19 chain 10437 chrX 155270560 + 104689329 104689474 L1PA8 5853 - 6 149 158538 87 1 0 19 2 1 36 chain 74180 chrX 155270560 + 104699483 104700600 L1PREC2 3366 - 344 1422 46420 12 7 5 30 26 12 11 3 0 26 28 21 17 54 42 42 1 0 52 2 0 163 1 2 334 0 1 308 chain 16808 chrX 155270560 + 104708359 104708613 MER6 865 - 0 263 136094 95 20 28 40 7 8 92 chain 56584 chrX 155270560 + 104729305 104730179 L1MA3 4352 - 0 839 54795 22 8 4 11 1 0 27 1 0 6 2 1 23 2 0 24 4 0 107 57 38 68 6 4 4 0 1 394 7 5 100 chain 95257 chrX 155270560 + 104756775 104757977 L1PA7 6471 - 13 1214 38017 40 6 5 98 1 0 6 5 6 20 1 2 660 1 0 277 0 13 10 14 1 63 chain 3870 chrX 155270560 + 104789257 104789331 L1MEf 1413 - 412 466 209308 9 19 0 3 1 0 42 chain 23035 chrX 155270560 + 104821881 104822139 L1PA3long 6157 - 5 263 115473 258 chain 36653 chrX 155270560 + 104888604 104889048 L1PA7 6471 - 3 447 74019 140 1 0 4 0 1 9 3 0 146 0 4 24 4 3 113 chain 77280 chrX 155270560 + 104910181 104911055 MER11D 897 - 0 897 44841 287 1 24 586 chain 39986 chrX 155270560 + 104911055 104911515 HERVK11D-int 613 - 0 460 69338 81 1 0 244 1 0 107 0 2 26 chain 109150 chrX 155270560 + 104918669 104920063 L1PA10 4194 - 112 1509 34404 249 10 9 237 0 1 391 0 1 325 0 1 26 3 2 6 0 1 68 1 2 78 chain 7648 chrX 155270560 + 104920063 104920156 U6 107 - 0 93 173238 93 chain 522038 chrX 155270560 + 104928055 104934218 L1PA6 6164 + 0 6162 4956 181 1 0 54 1 3 280 0 2 47 1 0 177 5 6 623 5 9 64 0 1 409 2 1 468 16 0 141 2 0 719 4 0 4 0 1 308 0 3 5 0 1 204 0 1 46 0 1 170 0 1 1164 4 5 214 3 7 48 0 1 793 chain 5066 chrX 155270560 + 104972276 104972345 L1MC1 2226 - 250 318 194463 62 1 0 6 chain 71017 chrX 155270560 + 104983350 104984120 L1PA2 6032 - 10 780 47921 770 chain 16264 chrX 155270560 + 104984120 104984303 L1P1 4361 + 3100 3282 137565 103 1 0 79 chain 29517 chrX 155270560 + 105023170 105023478 AluYb8 318 + 0 308 86573 308 chain 37557 chrX 155270560 + 105033397 105033833 L1PA6 6164 + 5724 6161 72741 109 0 1 327 chain 540441 chrX 155270560 + 105040899 105046909 L1PA3long 6157 + 0 6149 2747 5 2 0 147 0 1 617 0 108 8 0 20 2230 0 1 43 1 0 557 0 1 184 2 1 1065 0 12 1149 chain 530666 chrX 155270560 + 105049484 105056905 L1PA7 6471 - 3 6471 4120 146 2 3 10 1 2 605 0 2 69 0 8 643 1 2 23 4 0 274 0 2 675 47 0 203 0 1 150 0 1 124 0 3 279 916 0 55 0 1 420 1 3 66 1 4 60 3 1 377 1 0 93 1 0 427 0 2 364 1 0 82 1 2 5 8 0 384 0 1 16 0 1 21 8 8 224 34 31 192 1 0 403 chain 77171 chrX 155270560 + 105052798 105053656 L1PA4 6152 - 12 870 44801 858 chain 28060 chrX 155270560 + 105074636 105074969 L1PA5 6144 + 5795 6131 92787 186 6 9 141 chain 27840 chrX 155270560 + 105093043 105093396 THE1A 353 - 0 353 93559 180 2 3 60 1 0 110 chain 123163 chrX 155270560 + 105093401 105094974 THE1A-int 1579 - 5 1579 29987 65 28 23 115 10 9 87 0 1 54 2 3 63 9 5 618 0 2 473 0 7 49 chain 6908 chrX 155270560 + 105094982 105095070 THE1A 353 - 5 87 178132 61 6 0 21 chain 5699 chrX 155270560 + 105104681 105104752 MADE1 96 + 0 96 188121 17 0 25 54 chain 5891 chrX 155270560 + 105122883 105123258 MLT1C 463 - 36 406 186262 23 285 280 67 chain 6894 chrX 155270560 + 105125048 105125129 L1PA7 6471 + 6388 6469 178228 81 chain 15559 chrX 155270560 + 105134456 105134836 THE1B 368 - 0 368 139702 14 60 47 17 0 2 48 1 0 10 1 0 4 79 79 125 4 5 17 chain 80983 chrX 155270560 + 105163745 105164620 L1PA2 6032 - 862 1737 43200 875 chain 79897 chrX 155270560 + 105164620 105165486 L1PA2 6032 + 5166 6032 43516 866 chain 27179 chrX 155270560 + 105191170 105191455 AluYa5 310 + 17 302 95666 285 chain 528291 chrX 155270560 + 105203682 105209729 L1PA4 6152 + 10 6152 4375 47 4 6 324 0 92 1192 1 0 649 1 0 456 15 0 281 0 1 49 1 0 76 1 0 345 0 12 147 1 0 194 1 0 754 1 0 418 0 2 249 0 4 172 0 4 668 chain 72153 chrX 155270560 + 105214601 105215601 L1PA11 4918 + 3570 4563 47405 95 0 1 642 0 12 6 1 0 67 2 1 11 6 4 65 2 0 34 4 0 9 8 3 10 13 9 15 1 0 9 chain 5561 chrX 155270560 + 105220103 105220200 MER20 218 + 21 118 189468 18 4 6 38 8 6 29 chain 43226 chrX 155270560 + 105221856 105222412 LTR19B 566 + 0 566 65139 183 0 8 41 5 0 35 0 4 13 1 2 208 0 5 15 3 0 52 chain 33209 chrX 155270560 + 105234400 105234847 MER4A1 472 + 4 472 78865 107 0 1 20 1 0 90 20 41 209 chain 54491 chrX 155270560 + 105236183 105236763 L1PA2 6032 - 5 585 56031 580 chain 39608 chrX 155270560 + 105236765 105237194 L1PA2 6032 + 5030 5459 69880 429 chain 238354 chrX 155270560 + 105244783 105247480 HERV17-int 4347 + 1653 4347 16861 1357 0 1 123 4 0 1213 chain 27822 chrX 155270560 + 105247795 105248113 LTR17 781 + 0 326 93622 51 0 8 267 chain 37884 chrX 155270560 + 105297982 105298454 MER4A1 472 + 0 472 72303 472 chain 29535 chrX 155270560 + 105300708 105301095 MLT2A1 477 - 92 477 86499 188 3 2 17 1 0 6 7 4 152 0 3 13 chain 171362 chrX 155270560 + 105323644 105325496 L1PA2 6032 - 0 1852 21899 1852 chain 8776 chrX 155270560 + 105325496 105325590 L1PA2 6032 + 4086 4180 165280 94 chain 35655 chrX 155270560 + 105326815 105327383 L1MA1 4479 - 3673 4243 75328 20 4 3 41 0 1 11 1 0 76 18 23 166 25 29 7 0 1 4 1 0 65 4 0 79 2 0 44 chain 228410 chrX 155270560 + 105328254 105330833 L1PA5 6144 + 3538 6132 17394 70 0 1 71 1 0 474 0 4 1776 0 11 187 chain 8846 chrX 155270560 + 105342234 105342357 MSTA 426 + 264 408 166395 29 4 25 90 chain 7661 chrX 155270560 + 105342382 105342507 L1PREC2 3366 - 3027 3147 173159 50 1 0 31 1 0 4 1 0 5 3 2 15 1 0 13 chain 24227 chrX 155270560 + 105348979 105349335 THE1B 368 + 0 368 109052 39 1 16 25 1 2 57 0 4 23 8 6 24 9 3 169 chain 123514 chrX 155270560 + 105349335 105350907 THE1B-int 1605 + 0 1600 29874 326 0 1 102 2 27 71 1 0 129 4 3 16 0 1 4 0 2 816 0 1 101 chain 36304 chrX 155270560 + 105351859 105352321 LTR2 463 + 0 463 74499 197 2 4 179 0 1 30 1 0 28 1 0 24 chain 40119 chrX 155270560 + 105357866 105358363 MER9a3 513 - 0 498 69157 79 0 1 254 7 8 96 1 0 60 chain 24090 chrX 155270560 + 105367893 105368187 MER4E 760 - 9 303 109799 294 chain 135242 chrX 155270560 + 105369002 105370633 L1PA6 6164 - 2 1640 26970 154 20 18 108 0 6 567 0 1 13 4 5 179 0 1 472 0 1 55 2 1 57 chain 22227 chrX 155270560 + 105370658 105370970 L1P2 5180 - 4869 5178 119217 60 23 22 31 1 0 48 1 0 148 chain 13422 chrX 155270560 + 105370987 105371145 MLT2A1 477 - 117 275 146617 158 chain 72178 chrX 155270560 + 105377676 105378452 L1PA3long 6157 - 1309 2085 47389 776 chain 4341 chrX 155270560 + 105378452 105378498 L1PA3long 6157 + 4847 4893 200459 46 chain 115057 chrX 155270560 + 105378498 105379760 L1PA3long 6157 + 4894 6156 32771 1262 chain 19463 chrX 155270560 + 105388219 105388581 THE1B 368 + 0 368 128777 111 0 3 6 17 15 34 31 24 7 0 5 4 1 0 4 0 1 18 0 8 66 30 29 33 chain 4234 chrX 155270560 + 105389366 105389416 LTR25 836 + 496 546 204113 50 chain 12095 chrX 155270560 + 105396122 105396258 L1PA8 5853 - 1929 2065 151814 136 chain 155906 chrX 155270560 + 105396258 105398175 L1PA8 5853 + 3947 5853 23868 387 2 0 36 0 1 28 1 0 611 7 5 549 1 0 45 2 0 73 1 0 6 1 2 5 2 0 45 2 1 19 2 1 92 chain 24003 chrX 155270560 + 105406415 105406680 L1PA4 6152 + 5886 6151 110316 265 chain 64453 chrX 155270560 + 105409490 105410193 L1PA2 6032 - 0 703 50821 703 chain 2906 chrX 155270560 + 105425085 105425510 LTR12 884 - 0 660 68159 51 0 236 219 2 0 37 3 4 113 chain 7153 chrX 155270560 + 105425510 105425603 LTR12 884 - 792 884 138129 59 9 8 25 chain 268913 chrX 155270560 + 105427240 105430524 HERV9-int 5642 - 2432 5635 15237 347 0 3 131 0 1 147 0 1 641 1 0 694 1 0 134 1 2 6 84 0 216 4 8 88 1 0 75 6 0 112 0 2 595 chain 1502 chrX 155270560 + 105429348 105429403 HERV9-int 5642 - 4540 4595 182090 55 chain 20409 chrX 155270560 + 105430562 105430844 LTR12 884 - 236 519 83060 11 0 3 257 2 0 12 chain 1429 chrX 155270560 + 105430844 105431053 LTR12 884 - 676 884 68159 183 1 0 25 chain 493035 chrX 155270560 + 105433225 105439071 L1PA4 6152 - 1 5548 7221 253 0 1 116 314 0 1429 0 4 58 0 1 1690 0 3 880 1 0 1057 0 7 48 chain 3641 chrX 155270560 + 105439558 105439965 L1ME1 1623 - 997 1424 212953 16 65 87 15 43 55 18 201 189 8 2 0 39 chain 116151 chrX 155270560 + 105453725 105455311 THE1B-int 1605 - 0 1605 32395 389 0 1 423 84 66 160 0 4 42 2 1 5 0 1 57 3 28 215 0 3 61 18 20 92 0 2 35 chain 23476 chrX 155270560 + 105455311 105455664 THE1B 368 - 0 368 113236 98 7 6 71 33 31 19 0 3 86 0 15 39 chain 52378 chrX 155270560 + 105464913 105465509 L1PA6 6164 + 5563 6160 57374 269 0 1 327 chain 9439 chrX 155270560 + 105468858 105468963 L1PA3long 6157 + 6048 6153 163368 105 chain 229169 chrX 155270560 + 105477246 105481420 L1PB1 5432 + 2274 5404 17347 78 9 5 140 3 0 113 4 9 6 5 0 211 7 0 157 0 1 4 1 0 311 1016 5 252 0 1 160 4 5 154 1 2 74 0 1 29 0 1 634 4 9 22 1 2 136 8 0 9 2 10 177 6 7 103 1 0 11 2 1 20 1 0 13 1 0 9 6 2 11 2 0 51 19 17 44 3 2 13 1 0 5 18 7 19 3 1 4 1 0 14 3 1 17 0 1 5 1 0 21 1 0 13 chain 71727 chrX 155270560 + 105478300 105479305 MER11A 1151 + 0 1151 47598 55 0 99 135 8 5 94 0 1 51 11 12 81 0 1 3 0 1 21 1 0 114 6 9 8 1 0 55 0 4 50 5 4 15 7 41 49 0 9 167 9 8 59 chain 236538 chrX 155270560 + 105495922 105499911 L1MA1 4479 - 329 3907 16950 8 1 0 35 1 0 12 16 17 126 3 0 5 1 0 14 1 0 4 0 1 69 1 0 19 3 1 13 8 7 64 1 0 13 5 3 25 1 0 4 0 1 169 1 2 25 2 0 118 0 1 4 5 0 15 0 2 62 5 0 44 10 5 11 1 0 39 0 1 34 4 0 20 24 22 44 0 3 90 5 6 7 2 0 27 1 0 91 20 20 43 1 0 29 15 13 38 6 5 51 1 0 66 1 0 132 2 0 291 0 2 6 1 0 9 4 0 78 0 2 21 63 57 52 0 1 77 377 0 49 1 0 140 0 1 73 0 3 13 35 24 162 3 0 102 0 1 43 0 5 371 1 0 4 4 9 88 4 5 80 0 4 7 0 1 4 1 0 7 0 4 79 6 8 15 chain 3946 chrX 155270560 + 105498054 105498101 L1MA1 4479 + 2031 2078 208174 47 chain 25016 chrX 155270560 + 105498249 105498619 THE1B 368 - 2 368 104705 73 7 6 93 1 3 18 4 1 60 11 6 61 0 5 27 2 0 13 chain 178548 chrX 155270560 + 105500326 105502941 MER57-int 2662 - 18 2554 21116 19 3 0 36 13 7 15 21 17 7 1 0 14 154 109 77 2 1 13 13 12 133 5 0 183 0 1 16 0 8 49 0 1 17 11 7 60 17 0 26 0 12 157 0 1 240 1 0 67 1 4 167 10 4 68 4 0 277 2 0 504 2 0 25 13 8 60 3 5 109 chain 9738 chrX 155270560 + 105531795 105531935 THE1B 368 + 0 143 161899 15 2 0 15 7 12 101 chain 83429 chrX 155270560 + 105547436 105550046 L1MA1 4479 - 317 1621 42145 11 1 0 9 4 3 32 2 0 27 14 13 115 3 0 5 1 0 79 1 0 23 10 8 11 1 0 73 1 0 14 14 12 14 1 0 34 0 1 134 5 6 18 3 0 13 17 8 110 34 31 95 3 0 12 5 4 83 11 9 170 2 0 27 1 0 27 1266 0 58 2 1 14 chain 17163 chrX 155270560 + 105551559 105551769 THE1A 353 + 0 208 135130 110 1 0 92 1 0 6 chain 17255 chrX 155270560 + 105553313 105553523 THE1A 353 - 145 353 134912 6 1 0 92 1 0 110 chain 15144 chrX 155270560 + 105558707 105558903 AluSz6 309 + 83 279 140932 56 4 7 5 3 0 128 chain 44868 chrX 155270560 + 105579443 105580049 MER4B 649 - 7 649 63213 9 1 0 68 2 1 199 5 0 11 1 0 155 6 48 10 0 1 80 3 4 56 chain 21641 chrX 155270560 + 105583512 105583759 L1PA7 6471 + 6212 6459 121610 247 chain 50016 chrX 155270560 + 105586142 105586771 LTR12 884 - 133 884 59004 374 2 0 36 0 1 90 2 0 3 0 84 25 0 41 97 chain 71182 chrX 155270560 + 105617400 105618401 L1PA13 3608 + 2494 3488 47854 447 11 16 175 1 0 27 2 1 38 0 2 34 1 0 5 9 10 24 2 0 60 2 1 27 2 1 29 1 0 5 2 0 47 10 6 19 1 0 20 chain 212395 chrX 155270560 + 105625472 105627803 L1PA3long 6157 - 5 2337 18337 333 0 1 1998 chain 2735 chrX 155270560 + 105627803 105627832 L1PA3long 6157 + 3776 3805 228264 29 chain 10209 chrX 155270560 + 105645463 105645586 MER50 708 - 123 245 159571 104 1 0 18 chain 508604 chrX 155270560 + 105650275 105656392 L1PA6 6164 + 0 6161 6271 195 0 1 313 2 1 75 18 24 98 3 0 84 8 12 136 0 25 177 1 0 301 0 9 402 0 4 475 1 2 851 1 0 1177 1 5 88 0 1 193 1 0 29 1 0 100 1 0 534 4 0 6 0 4 504 1 0 10 1 0 325 chain 7368 chrX 155270560 + 105669805 105669889 HY3 101 + 8 92 174990 84 chain 52942 chrX 155270560 + 105689164 105689910 L1PA16 3655 + 2861 3598 57056 36 2 1 24 1 0 161 1 0 121 19 18 69 3 1 118 0 1 167 3 0 15 1 0 5 chain 47992 chrX 155270560 + 105692508 105693028 L1PA4 6152 - 14 534 60495 520 chain 567722 chrX 155270560 + 105712515 105718549 L1HS 6032 + 1 6032 45 740 0 1 1918 4 0 3372 chain 6823 chrX 155270560 + 105720271 105720417 LTR48B 642 - 490 642 178773 13 5 9 35 13 12 11 15 18 54 chain 41655 chrX 155270560 + 105722198 105722671 L1PA5 6144 + 5655 6129 67085 154 1 2 318 chain 517593 chrX 155270560 + 105730369 105737526 L1PA7 6471 - 15 6456 5411 319 0 1 515 2 0 254 1 0 4 0 1 377 1 0 269 1 0 134 0 1 153 3 0 163 0 1 583 691 5 47 0 1 275 0 1 711 9 0 380 1 0 438 9 6 36 0 1 384 0 3 122 0 19 68 10 0 24 4 6 47 16 6 28 5 16 275 8 1 25 11 16 163 3 0 67 12 11 26 1 0 61 4 0 9 25 4 155 0 1 228 chain 49837 chrX 155270560 + 105733172 105733839 LTR12 884 - 15 884 59129 25 0 4 17 3 136 4 0 1 305 2 0 36 0 67 235 21 20 19 chain 24875 chrX 155270560 + 105741035 105741301 L1PA2 6032 - 3 269 105486 266 chain 3974 chrX 155270560 + 105741373 105741450 L1MB8 1703 - 923 1007 207776 27 17 24 33 chain 146748 chrX 155270560 + 105794299 105799066 L1MA2 4263 + 4 4110 25047 18 1 0 21 0 6 94 1 0 4 0 4 12 14 0 19 2004 0 34 1 0 61 1 0 43 5 13 14 8 0 135 1 0 124 432 1777 156 12 11 91 6 4 10 8 0 85 4 5 23 1 0 68 0 4 66 2 4 40 25 27 305 7 12 156 1 0 12 0 1 120 5 0 2 0 1 73 4 3 128 0 16 72 107 105 75 7 0 43 0 3 6 chain 40095 chrX 155270560 + 105794512 105794993 LTR17 781 + 268 781 69190 59 1 0 249 1 12 128 0 22 43 chain 18226 chrX 155270560 + 105813634 105813863 L1PA4 6152 + 5926 6143 132266 112 12 0 105 chain 91650 chrX 155270560 + 105813888 105815194 L1PREC2 3366 + 1682 2948 39071 141 0 9 639 15 7 4 1 0 234 0 1 35 2 0 27 19 7 20 1 0 44 1 0 4 3 0 13 36 21 11 3 1 6 3 0 17 2 0 25 chain 538092 chrX 155270560 + 105816386 105822520 L1PA4 6152 - 17 6152 3138 450 2 0 152 0 1 2219 0 1 1640 2 0 585 1 4 882 0 27 10 34 7 157 chain 6041 chrX 155270560 + 105827067 105827135 L1PA6 6164 + 6093 6161 184882 68 chain 51498 chrX 155270560 + 105845945 105846500 L1PA3long 6157 + 5591 6146 57968 555 chain 4467 chrX 155270560 + 105870925 105870976 L1MA7 2200 + 1865 1916 201145 51 chain 28275 chrX 155270560 + 105881494 105881791 AluYa5 310 - 13 310 92017 297 chain 5586 chrX 155270560 + 105883045 105883125 MADE1 96 - 0 96 189215 34 2 18 44 chain 204156 chrX 155270560 + 105886426 105889467 L1MA1 4479 - 328 3347 18914 9 1 0 35 2 0 29 1 0 126 3 0 6 1 0 84 1 0 17 2 0 19 1 0 71 1 0 16 2 0 25 1 0 6 82 134 61 2 0 80 7 8 21 26 23 69 5 0 47 4 0 14 1 0 93 2 0 176 2 0 9 0 2 13 1 0 86 1 0 68 5 4 29 5 3 6 0 4 88 1 0 75 1 0 443 6 10 53 2 0 39 15 24 338 5 7 425 70 18 106 chain 35421 chrX 155270560 + 105890581 105891216 L1MA2 4263 - 205 801 75651 92 1 0 9 2 1 57 15 15 45 0 1 30 3 0 5 18 18 28 1 0 25 1 0 4 0 1 65 1 0 53 86 53 94 chain 72950 chrX 155270560 + 105896788 105897642 L1PA7 6471 - 21 876 47045 653 1 3 173 1 0 26 chain 40827 chrX 155270560 + 105897642 105898112 L1PA7 6471 + 5116 5589 68134 205 0 2 86 5 6 174 chain 49714 chrX 155270560 + 105898573 105899142 L1PA5 6144 - 0 569 59221 569 chain 3311 chrX 155270560 + 105906394 105906432 tRNA-Ile-ATT 40 + 0 38 218764 38 chain 23404 chrX 155270560 + 105952779 105953064 AluSp 311 - 14 300 113624 15 0 1 270 chain 8023 chrX 155270560 + 105980451 105980549 L1PA3long 6157 - 0 92 170927 14 6 0 78 chain 47605 chrX 155270560 + 105986956 105987487 L1PA5 6144 + 5607 6141 60759 374 1 4 156 chain 90533 chrX 155270560 + 106000000 106000975 L1PA2 6032 + 5051 6030 39459 131 0 4 844 chain 43255 chrX 155270560 + 106004101 106004835 L1PA15 4387 + 3633 4327 65114 28 12 0 152 0 2 13 4 0 63 3 1 8 6 1 31 6 0 9 21 21 141 2 1 16 23 22 43 1 0 22 4 0 9 2 1 50 6 3 41 3 1 15 chain 510779 chrX 155270560 + 106008951 106015099 L1PA6 6164 - 2 6164 6086 99 4 0 38 0 2 175 0 1 14 0 2 285 0 1 106 0 1 368 1 0 394 1 3 1483 0 1 385 0 2 459 22 9 141 21 0 329 0 5 413 3 0 209 0 1 285 0 25 317 0 2 93 6 5 309 0 1 34 10 22 20 12 11 112 chain 42883 chrX 155270560 + 106057092 106057587 L1PA3long 6157 - 0 498 65556 11 1 4 483 chain 130183 chrX 155270560 + 106057587 106059015 L1PA4 6152 - 311 1739 28052 1428 chain 48158 chrX 155270560 + 106059021 106059558 L1PA4 6152 + 3869 4410 60356 478 0 4 59 chain 24278 chrX 155270560 + 106069655 106069939 L1PA4 6152 - 1 286 108787 108 3 5 146 1 0 26 chain 283045 chrX 155270560 + 106071057 106074184 L1PA3long 6157 + 3030 6156 14465 1042 1 0 2084 chain 18768 chrX 155270560 + 106077346 106077690 THE1C 375 - 11 375 130777 115 52 63 5 0 2 63 8 10 20 15 16 17 0 6 32 2 0 15 chain 106833 chrX 155270560 + 106077690 106079286 THE1C-int 1605 - 0 1605 35027 29 5 0 77 6 7 115 1 2 73 18 21 313 2 1 114 21 5 87 8 2 154 6 13 23 25 26 74 0 1 16 5 12 101 11 31 55 59 0 43 0 54 138 1 2 16 chain 23580 chrX 155270560 + 106088541 106088798 L1PA3long 6157 - 10 267 112690 257 chain 177441 chrX 155270560 + 106094646 106096603 L1PA4 6152 - 0 1950 21212 150 0 1 1256 8 0 543 chain 9171 chrX 155270560 + 106115718 106115884 LTR26B 539 - 314 539 164700 12 1 5 32 0 1 16 23 77 82 chain 33199 chrX 155270560 + 106124819 106125224 L1PA7 6471 - 3 402 78887 7 7 0 140 0 1 251 chain 28669 chrX 155270560 + 106177919 106178237 L1PA2 6032 + 5710 6028 90454 50 0 1 251 1 0 16 chain 34967 chrX 155270560 + 106204718 106205158 LTR12F 595 + 0 584 76234 79 1 144 141 0 1 219 chain 466186 chrX 155270560 + 106209554 106215701 L1PA7 6471 + 11 6465 8181 167 2 3 20 11 10 29 134 331 150 5 15 57 35 110 35 16 16 92 0 21 52 0 3 15 8 6 154 4 0 220 1 2 329 5 6 633 1 2 106 0 8 7 8 0 22 15 0 242 3 0 193 0 3 13 15 22 408 54 53 691 1 2 4 1 0 6 0 1 127 1 6 204 0 2 65 0 2 98 0 3 836 1 0 97 1 0 400 0 1 202 0 1 151 chain 6145 chrX 155270560 + 106238760 106238882 L1MA5 2750 - 89 209 184034 13 5 4 12 2 1 14 7 8 47 1 0 21 chain 65166 chrX 155270560 + 106254008 106254723 L1PA5 6144 + 5412 6128 50487 376 0 1 339 chain 9353 chrX 155270560 + 106269337 106269480 Tigger1 2417 - 61 201 163794 105 4 0 11 6 7 17 chain 76887 chrX 155270560 + 106278735 106279551 L1HS 6032 + 5214 6030 45036 816 chain 27663 chrX 155270560 + 106280956 106281407 L1PA15 4387 + 3848 4289 94176 39 21 20 24 1 0 61 0 3 109 1 0 27 4 3 50 2 1 18 19 14 50 6 3 19 chain 24693 chrX 155270560 + 106285843 106286201 THE1B 368 - 0 368 106477 115 45 55 29 1 0 61 0 1 107 chain 28241 chrX 155270560 + 106295360 106295677 LTR17 781 - 455 781 92144 198 0 9 119 chain 61174 chrX 155270560 + 106297394 106298091 HERV17-int 4347 - 955 1654 52262 58 0 1 192 1 0 23 0 1 95 0 1 328 chain 5091 chrX 155270560 + 106299089 106299166 L1MB5 1630 - 1044 1141 194163 14 4 24 59 chain 21928 chrX 155270560 + 106334035 106334322 L1PA8 5853 - 0 281 120509 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 36 chain 18675 chrX 155270560 + 106347845 106348053 L1PA4 6152 - 2221 2429 131009 208 chain 198808 chrX 155270560 + 106348059 106350251 L1PA4 6152 + 3950 6143 19297 752 0 1 1440 chain 556147 chrX 155270560 + 106398997 106405013 L1PA2 6032 + 1 6025 708 1035 0 2 3542 0 1 1292 0 7 139 2 0 6 chain 17718 chrX 155270560 + 106405987 106406248 MER1B 344 - 6 300 133651 53 25 53 96 1 6 86 chain 53483 chrX 155270560 + 106441292 106442114 LTR12 884 + 32 884 56694 23 0 107 42 32 18 156 2 0 212 94 0 121 18 51 122 chain 2849 chrX 155270560 + 106441759 106441792 LTR12 884 + 693 726 188972 33 chain 2775 chrX 155270560 + 106441803 106441845 LTR12 884 + 635 677 188909 42 chain 7127 chrX 155270560 + 106445806 106445906 HY3 101 + 0 94 176564 25 6 0 69 chain 8122 chrX 155270560 + 106475507 106475599 LTR14 556 - 464 556 170369 92 chain 50564 chrX 155270560 + 106495577 106496178 MER4A1_ 611 + 0 602 58607 122 0 1 479 chain 12959 chrX 155270560 + 106497777 106498026 MER49 923 + 3 257 148397 87 69 72 53 0 2 40 chain 12959 chrX 155270560 + 106498071 106498216 MER4A1 472 + 0 145 148398 145 chain 15453 chrX 155270560 + 106499290 106499767 L1MA8 2339 + 1913 2339 140043 18 4 0 23 1 0 55 1 0 90 3 1 19 233 190 30 chain 23570 chrX 155270560 + 106501308 106501564 L1PA3long 6157 + 5900 6157 112741 249 0 1 7 chain 7459 chrX 155270560 + 106512047 106512219 L1MA9 1812 + 1310 1473 174404 19 2 0 7 26 25 27 1 0 27 3 0 5 2 1 36 1 0 16 chain 22093 chrX 155270560 + 106513442 106513698 L1PA4 6152 - 1 261 119824 6 0 2 145 0 2 105 chain 14257 chrX 155270560 + 106521497 106521688 MSTA-int 1630 + 0 196 143692 14 6 7 23 0 1 61 0 3 87 chain 83805 chrX 155270560 + 106522218 106523450 MER41-int 2638 - 2 2285 41984 80 0 1 101 0 3 156 0 3 53 13 15 125 1 0 19 1 4 38 6 5 112 65 1112 4 1 0 76 0 2 35 3 0 18 1 0 211 1 0 10 5 3 97 chain 13168 chrX 155270560 + 106523641 106523827 L1PA8 5853 - 0 182 147587 93 1 0 19 5 4 49 2 1 8 1 0 8 chain 19798 chrX 155270560 + 106523827 106524064 L1P3 4156 - 1092 1349 127816 31 3 23 203 chain 78066 chrX 155270560 + 106524173 106525382 L1MA3 4352 + 93 1300 44484 63 1 0 19 5 0 71 1 0 42 96 100 33 3 5 53 15 17 13 4 5 185 5 6 68 2 0 27 0 2 5 2 0 60 11 8 190 0 1 15 1 0 29 1 0 122 0 1 67 chain 4619 chrX 155270560 + 106534358 106534411 L1PA7 6471 + 5647 5700 199413 53 chain 66101 chrX 155270560 + 106534411 106535175 L1PA7 6471 + 5702 6464 50053 757 2 0 5 chain 5553 chrX 155270560 + 106539055 106539263 MER51A 677 + 297 416 189543 39 45 33 38 77 0 9 chain 26844 chrX 155270560 + 106576088 106576438 THE1B 368 + 0 368 96828 44 0 15 113 2 1 25 0 2 137 0 2 29 chain 3591 chrX 155270560 + 106592385 106592427 MIRb 242 - 101 143 213810 42 chain 552464 chrX 155270560 + 106607566 106613579 L1PA2 6032 + 1 6014 1136 736 2 0 2367 0 4 2586 2 3 195 3 0 122 chain 327693 chrX 155270560 + 106619287 106623198 L1PA7 6471 - 12 3947 12281 133 8 5 403 0 1 300 0 3 44 1 2 251 12 34 198 1 0 43 2 1 703 0 2 327 1 0 403 1 0 68 0 6 35 1 0 703 0 1 161 6 2 106 chain 5315 chrX 155270560 + 106647740 106647805 MLT1B 390 - 28 94 191868 44 0 1 21 chain 5348 chrX 155270560 + 106656388 106656545 L1M2a1 1281 - 154 269 191561 25 79 37 53 chain 432103 chrX 155270560 + 106666077 106671086 L1PA6 6164 + 1155 6156 9265 283 8 9 886 0 1 132 2 0 408 5 0 309 1 2 11 0 1 166 6 7 1430 16 16 499 1 0 93 6 0 423 0 1 324 chain 16482 chrX 155270560 + 106676617 106676807 L1PA5 6144 - 16 206 136974 190 chain 26754 chrX 155270560 + 106712399 106712752 THE1B 368 - 0 368 97149 171 13 25 130 0 5 24 2 0 13 chain 93269 chrX 155270560 + 106714587 106715706 L1PA8A 6298 - 7 1138 38577 92 9 15 612 0 2 76 2 5 39 0 1 289 chain 6411 chrX 155270560 + 106715706 106715825 L1P3b 214 + 3 107 181079 24 9 4 11 10 2 7 2 0 56 chain 166102 chrX 155270560 + 106732067 106733898 L1PA4 6152 - 1 1832 22506 761 1 0 802 0 1 267 chain 17243 chrX 155270560 + 106744583 106744762 AluYb8 318 - 4 183 134947 179 chain 122434 chrX 155270560 + 106759117 106760472 L1PA4 6152 - 11 1382 30240 1270 0 16 85 chain 6179 chrX 155270560 + 106812061 106812131 BC200 147 + 50 120 183746 70 chain 436612 chrX 155270560 + 106826369 106832669 L1PA8A 6298 - 7 5319 9147 101 1 0 6 0 1 600 352 0 85 12 9 814 0 2 384 0 2 210 2 1 196 1 2 19 5 6 4 1 0 432 0 4 47 24 17 138 3 0 710 0 1 486 302 0 133 8 0 26 316 0 397 0 3 279 9 7 28 0 1 22 12 0 14 0 4 121 chain 16268 chrX 155270560 + 106835176 106835536 L1PB1 5432 - 2 324 137553 4 1 0 4 1 0 18 1 0 12 1 0 22 1 0 24 33 25 8 8 0 17 3 0 15 3 2 43 2 1 14 2 1 51 19 13 12 1 0 10 1 0 19 3 0 7 chain 28976 chrX 155270560 + 106837203 106837608 L1PB 1623 - 170 590 89105 7 1 0 119 6 22 21 1 0 5 3 4 242 chain 154477 chrX 155270560 + 106855430 106857077 L1HS 6032 - 3 1649 24050 19 1 0 1627 chain 49606 chrX 155270560 + 106866082 106866793 Tigger1 2417 - 850 1572 59316 78 0 6 185 15 13 105 1 0 56 13 17 68 26 31 14 9 8 141 chain 3381 chrX 155270560 + 106914256 106914363 MIR 256 - 108 232 217444 25 53 70 29 chain 7686 chrX 155270560 + 106936064 106936306 L1MC1 2226 - 911 1154 173003 25 124 127 68 2 0 23 chain 3663 chrX 155270560 + 106962550 106962592 5S 121 + 0 42 212516 42 chain 8786 chrX 155270560 + 106998037 106998158 MER85 139 - 0 131 166733 21 1 0 8 3 14 88 chain 6328 chrX 155270560 + 107045992 107046067 L1MB8 1703 + 1289 1364 182562 75 chain 3762 chrX 155270560 + 107047923 107047990 L1P4 1494 + 1340 1404 210914 10 4 3 37 2 0 14 chain 2940 chrX 155270560 + 107058446 107058480 MIR 256 + 183 217 226324 34 chain 210323 chrX 155270560 + 107117413 107120615 MER52-int 3354 - 64 3211 18485 7 1 0 6 1 0 32 1 0 15 1 0 8 1 0 5 2 1 27 3 1 7 2 0 6 2 0 13 1 0 38 6 4 12 1 0 35 1 0 5 2 0 11 2 0 9 13 11 20 1 0 32 6 5 38 1 0 13 3 1 33 1 0 8 35 33 14 1 0 7 1 0 53 2 1 240 0 1 115 1 0 328 5 7 317 54 54 7 3 0 396 15 17 11 2 0 235 1 0 54 3 1 23 0 1 146 17 15 10 1 3 194 1 0 66 4 1 14 2 0 9 2 0 13 1 0 65 1 0 25 3 0 22 6 5 17 1 2 10 1 0 11 5 6 22 2 1 17 26 21 17 23 19 21 0 6 37 1 0 34 chain 114682 chrX 155270560 + 107125197 107126589 L1PA7 6471 + 5071 6466 32887 169 0 1 350 7 11 20 2 0 334 8 10 493 2 0 7 chain 540781 chrX 155270560 + 107128353 107134488 L1PA4 6152 - 0 6147 2692 8 0 1 9 1 0 95 0 1 3302 0 9 145 0 1 27 3 0 186 2 0 619 0 2 97 0 1 435 0 1 4 1 0 876 0 3 325 chain 3607 chrX 155270560 + 107138629 107138901 L1MD2 1676 - 202 475 213520 33 211 212 28 chain 8063 chrX 155270560 + 107144376 107144476 HY3 101 - 1 101 170674 100 chain 509954 chrX 155270560 + 107186799 107192911 L1PA6 6164 - 2 6162 6169 842 0 3 270 1 0 127 2 0 241 1 0 307 0 4 157 0 130 554 1 0 349 8 7 699 0 1 137 11 0 188 0 3 106 1 0 1068 0 1 164 0 17 224 95 0 98 7 6 349 0 1 41 0 2 64 chain 464070 chrX 155270560 + 107196808 107202993 L1PA8 5853 - 1 5803 8255 90 3 2 19 2 1 24 9 10 18 1 0 6 1 0 56 0 1 17 2 0 46 1 0 46 0 1 21 25 0 60 7 8 265 3 7 147 0 1 28 0 1 607 1 0 35 1 0 197 0 10 34 1 0 497 0 2 208 7 6 412 1 3 173 315 0 19 0 1 886 1 20 492 0 1 632 5 6 222 29 0 167 1 0 39 15 6 138 1 0 4 0 1 51 77 38 20 chain 43894 chrX 155270560 + 107210040 107210540 L1PA3long 6157 - 5 504 64339 150 1 0 349 chain 111048 chrX 155270560 + 107210540 107211747 L1PA3long 6157 + 4379 5586 33917 1207 chain 483357 chrX 155270560 + 107229318 107234913 L1PA4 6152 - 9 6142 7614 664 0 2 870 0 1 924 6 1 516 1 0 460 5 0 7 0 5 17 0 9 349 2 0 539 0 8 710 20 21 417 0 525 88 chain 2960 chrX 155270560 + 107237013 107237059 MIRb 242 - 1 47 225878 14 2 0 5 0 2 25 chain 44596 chrX 155270560 + 107241194 107241964 L1PB1 5432 + 4686 5424 63484 44 8 11 56 1 9 8 6 0 67 5 4 218 1 2 10 3 0 5 3 0 18 1 0 6 1 0 12 10 6 6 2 0 52 2 1 15 1 0 44 1 0 16 13 1 29 10 7 13 2 0 20 5 4 23 1 0 11 1 0 20 chain 376557 chrX 155270560 + 107254663 107258967 L1P1 4361 + 9 4321 10863 54 0 7 691 1 2 80 0 1 1070 0 1 392 1 0 491 0 1 1351 1 0 155 1 0 16 chain 3563 chrX 155270560 + 107261929 107261971 L1M2 1805 - 1441 1483 214263 42 chain 23840 chrX 155270560 + 107281326 107281664 L1PA8 5853 - 0 331 111255 92 2 1 19 2 1 40 14 12 79 2 0 47 1 0 40 chain 21602 chrX 155270560 + 107281664 107281907 L1PA8 5853 + 5269 5512 121760 243 chain 11703 chrX 155270560 + 107341214 107341342 L1PA6 6164 - 20 148 153454 128 chain 11791 chrX 155270560 + 107351876 107352110 L1MB2 1706 - 19 236 153083 76 6 5 8 1 0 12 27 13 76 16 15 12 chain 11013 chrX 155270560 + 107353753 107353953 L1MA5A 2387 - 91 261 156151 66 24 0 12 3 0 37 7 6 20 2 0 29 chain 30394 chrX 155270560 + 107356791 107357145 THE1A 353 - 0 353 83694 243 1 0 110 chain 21454 chrX 155270560 + 107384344 107384589 HERVL-int 5654 - 1383 1628 122316 245 chain 33598 chrX 155270560 + 107385636 107386140 MLT2A1 477 - 0 477 78242 58 6 0 10 43 16 8 6 0 141 1 2 60 4 14 27 1 2 139 chain 416264 chrX 155270560 + 107386140 107391208 HERVL-int 5654 - 0 5654 9632 86 0 1 662 1 4 108 0 1 4 1 0 311 122 6 556 0 4 171 0 708 159 0 1 162 0 10 1143 28 0 129 4 5 338 7 6 214 3 4 618 0 2 241 chain 2282 chrX 155270560 + 107387314 107387341 HERVL-int 5654 - 1183 1210 231434 27 chain 8296 chrX 155270560 + 107387341 107387435 HERVL-int 5654 - 1083 1177 169429 94 chain 29091 chrX 155270560 + 107391306 107391678 MLT2A1 477 - 94 477 88590 197 8 18 69 0 1 98 chain 32773 chrX 155270560 + 107466218 107466625 L1PA7 6471 + 6067 6469 79574 66 1 0 4 0 2 319 6 0 11 chain 21996 chrX 155270560 + 107471771 107472089 THE1C 375 - 55 375 120249 89 4 7 16 25 22 5 0 2 179 chain 21169 chrX 155270560 + 107503589 107503935 THE1B 368 + 0 368 123312 15 2 0 21 0 5 153 42 49 27 8 9 44 0 11 34 chain 18127 chrX 155270560 + 107516175 107516377 L1PA5 6144 - 9 211 132524 202 chain 50769 chrX 155270560 + 107516377 107516929 L1PA5 6144 + 5300 5852 58451 552 chain 557646 chrX 155270560 + 107520252 107526387 L1PA3long 6157 + 10 6157 539 143 0 12 5992 chain 21362 chrX 155270560 + 107527452 107527700 L1PA7 6471 + 6221 6470 122646 45 0 1 203 chain 13142 chrX 155270560 + 107540614 107540797 MER20 218 - 18 212 147677 106 3 8 4 1 0 59 0 7 10 chain 12062 chrX 155270560 + 107556739 107556867 L1PA4 6152 - 6 134 151934 128 chain 49491 chrX 155270560 + 107561245 107561815 L1P1 4361 + 3774 4341 59394 377 1 0 154 1 0 23 2 1 12 chain 5315 chrX 155270560 + 107592253 107592319 MER63A 208 + 94 160 191875 66 chain 17771 chrX 155270560 + 107599268 107599462 L1PA3long 6157 - 88 282 133510 194 chain 9019 chrX 155270560 + 107599469 107599570 L1PA3long 6157 + 6056 6157 165505 101 chain 44022 chrX 155270560 + 107620096 107620618 LTR5_Hs 974 - 0 526 64180 511 1 5 10 chain 499283 chrX 155270560 + 107628948 107635194 L1PA7 6471 - 2 6466 6873 10 2 0 151 4 3 168 1 0 427 2 0 5 7 8 69 0 5 514 1 3 77 1 0 1193 0 1 535 1 2 199 1 0 355 0 1 102 12 0 1037 0 1 274 0 17 179 4 26 112 13 12 4 0 1 241 6 16 121 3 11 66 24 194 27 106 105 192 chain 57651 chrX 155270560 + 107636993 107637666 L1PA7 6471 + 5794 6470 54159 6 0 4 662 1 0 4 chain 3231 chrX 155270560 + 107637679 107637723 MADE1 96 - 53 96 220396 38 1 0 5 chain 212368 chrX 155270560 + 107694082 107696430 L1PA3long 6157 - 0 2375 18338 63 0 6 1004 0 21 1281 chain 460006 chrX 155270560 + 107720467 107726389 HERVL-int 5654 - 0 5654 8399 168 0 1 75 0 5 47 317 0 19 7 9 112 1 0 102 0 1 9 0 10 374 0 1 361 2 1 32 0 1 203 0 10 11 1 2 673 0 1 27 1 0 646 0 1 278 0 1 802 3 5 693 2 0 85 0 1 129 1 6 259 12 15 410 4 12 56 chain 28593 chrX 155270560 + 107726486 107726853 MLT2A1 477 - 92 475 90775 212 0 4 26 0 1 15 5 16 109 chain 4504 chrX 155270560 + 107733799 107733851 Tigger3b 1229 - 980 1032 200740 52 chain 118660 chrX 155270560 + 107746520 107748354 L1PB3 3668 + 1733 3562 31550 73 4 1 305 2 0 96 4 19 238 1 0 5 42 45 32 0 4 14 30 31 72 4 3 61 5 6 121 4 5 19 0 1 103 2 0 17 3 0 46 5 0 32 6 8 23 4 3 175 1 0 91 10 9 21 0 8 58 46 27 23 8 6 28 chain 103866 chrX 155270560 + 107750188 107752421 L1PREC2 3366 + 1478 3215 35753 7 0 6 275 30 0 22 5 8 169 2 3 20 3 0 20 314 0 385 3 4 36 7 0 6 0 7 274 1 0 7 0 1 16 27 0 8 3 1 46 9 8 43 1 0 4 64 52 11 0 1 4 8 5 25 36 19 35 11 9 18 188 108 14 57 41 19 chain 38508 chrX 155270560 + 107755778 107756234 MER11C 1089 - 99 561 71426 126 0 1 125 0 1 45 0 4 160 chain 94225 chrX 155270560 + 107773575 107774595 L1PA3long 6157 + 5136 6153 38288 496 3 0 521 chain 540731 chrX 155270560 + 107785340 107791480 L1PA5 6144 - 0 6144 2701 140 10 11 761 6 7 1549 0 1 76 2 1 433 1 2 312 0 1 2850 chain 33149 chrX 155270560 + 107794109 107794519 L1PA16 3655 + 2479 2888 78988 195 1 0 214 chain 22678 chrX 155270560 + 107801169 107801415 L1PA5 6144 - 12 259 117174 34 0 1 212 chain 3762 chrX 155270560 + 107863017 107863117 MER5C 305 + 11 121 210923 22 40 50 38 chain 155072 chrX 155270560 + 107872902 107874704 L1PA6 6164 - 6 1818 23972 141 19 24 159 0 1 460 0 3 353 0 1 670 chain 139444 chrX 155270560 + 107874718 107876369 L1PA6 6164 + 2656 4312 26229 23 0 1 285 5 7 106 0 2 110 0 1 210 1 0 28 7 6 268 1 0 268 0 2 339 chain 394562 chrX 155270560 + 107885692 107894150 L1PB1 5432 + 25 5424 10302 27 1 2 49 7 8 295 23 0 201 0 1 105 0 46 126 0 1 509 1 0 6 3 0 4 13 0 196 0 5 416 9 10 70 11 13 49 0 10 21 353 5 298 6 4 71 0 4 165 2685 0 100 1 0 144 3 19 237 9 7 474 26 15 34 2 0 298 2 1 383 0 1 171 16 0 82 2 0 287 4 2 85 27 26 6 3 0 19 1 0 13 1 0 10 6 2 10 2 0 52 19 17 44 2 1 13 3 0 15 9 0 13 12 9 14 2 0 24 1 0 21 1 0 12 2 1 16 1 0 4 chain 233377 chrX 155270560 + 107888817 107891410 L1PA4 6152 - 6 2601 17123 498 0 1 1708 0 1 387 chain 10125 chrX 155270560 + 107894229 107894364 L1MB8 1703 + 1431 1565 159968 83 1 0 51 chain 20448 chrX 155270560 + 107905156 107905382 L1PA4 6152 - 2 228 125762 226 chain 12145 chrX 155270560 + 107905407 107905544 L1PA4 6152 + 5780 5918 151628 120 0 1 17 chain 6206 chrX 155270560 + 107905709 107905790 L1P1 4361 + 4249 4328 183534 11 1 0 45 1 0 23 chain 168510 chrX 155270560 + 107925146 107927171 L1PA7 6471 - 10 2050 22222 12 1 0 134 1 0 137 0 13 209 0 2 244 0 1 86 3 0 396 8 11 237 3 2 28 1 0 364 0 3 161 chain 107289 chrX 155270560 + 107927171 107928457 L1PA7 6471 + 3134 4433 34873 350 1 2 66 0 8 27 1 4 801 0 1 40 chain 4859 chrX 155270560 + 107934023 107934145 L1MA4A 3247 + 3059 3179 196686 41 50 48 31 chain 6257 chrX 155270560 + 107991969 107992092 MER44B 551 + 390 511 183118 69 32 30 22 chain 10764 chrX 155270560 + 108013315 108013454 THE1D 372 - 2 146 157137 30 1 0 101 0 6 7 chain 26866 chrX 155270560 + 108013454 108013833 MER11A 1151 - 0 423 96756 167 0 1 16 1 0 25 0 1 16 0 9 32 18 0 11 0 49 15 3 2 60 0 4 15 chain 22390 chrX 155270560 + 108026705 108026999 AluSp 311 - 19 311 118532 154 8 6 132 chain 4174 chrX 155270560 + 108027331 108027846 L1MC4 1079 - 208 720 204922 30 330 330 18 101 98 36 chain 47194 chrX 155270560 + 108037002 108037603 L1PA11 4918 - 514 1111 61051 10 2 1 46 0 1 14 4 0 525 chain 451593 chrX 155270560 + 108044061 108049735 L1PA6 6164 + 0 6156 8715 503 24 28 36 1 0 215 4 22 10 17 0 1260 1 0 144 3 5 109 6 8 61 0 3 110 0 1 192 9 10 460 2 1 10 0 2 48 0 4 7 1 5 52 12 1 96 0 1 73 11 14 211 0 1 98 1 4 560 0 4 12 0 453 57 7 8 387 0 4 25 0 2 81 0 1 93 0 1 339 2 0 7 1 0 163 6 7 147 chain 28319 chrX 155270560 + 108051124 108051451 L1PA5 6144 - 0 327 91873 327 chain 30469 chrX 155270560 + 108057291 108057708 MLT2A1 477 - 2 475 83490 27 3 11 11 3 41 195 4 0 8 0 14 166 chain 357433 chrX 155270560 + 108057719 108062102 HERVL-int 5654 - 9 5396 11417 211 1 0 4 0 2 208 32 0 31 0 2 1381 0 1 271 0 1 157 0 1033 628 3 1 62 0 1 42 4 0 84 0 1 699 0 3 173 1 0 277 1 0 37 0 1 76 chain 26317 chrX 155270560 + 108062109 108062465 L1PA10 4194 - 402 759 98757 267 6 7 83 chain 503787 chrX 155270560 + 108062469 108068898 L1PA7 6471 - 3 6471 6618 93 2 1 20 4 5 20 1 0 198 2 0 258 0 4 705 10 12 86 0 1 80 1 0 211 0 1 95 1 3 67 0 2 473 0 1 122 1 0 6 2 0 168 0 1 248 0 2 54 5 2 316 4 22 211 0 1 253 0 1 165 0 1 802 5 0 551 0 1 21 0 10 272 12 13 204 8 4 22 45 46 196 8 9 142 11 19 50 1 0 197 chain 12039 chrX 155270560 + 108085631 108085779 L1MA7 2200 - 876 1024 152033 148 chain 173280 chrX 155270560 + 108086365 108088795 L1PA8A 6298 - 188 2726 21680 486 0 3 46 11 12 58 181 276 355 0 1 39 0 2 476 0 1 130 8 11 341 1 2 163 1 2 134 chain 11718 chrX 155270560 + 108087008 108087138 L1PA5 6144 - 14 144 153388 130 chain 40670 chrX 155270560 + 108088797 108089278 L1PA7 6471 + 5978 6459 68337 481 chain 214861 chrX 155270560 + 108089298 108092643 L1PB1 5432 + 2361 5408 18177 85 10 14 32 0 3 770 0 1 462 0 10 552 322 0 334 9 6 9 0 1 166 3 0 17 0 19 44 4 3 38 0 1 28 0 20 32 2 0 6 2 6 28 2 0 5 7 9 41 1 2 9 3 0 24 1 0 8 1 0 12 5 1 9 6 4 48 18 16 44 1 0 16 25 16 15 2 0 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 4 chain 29044 chrX 155270560 + 108098265 108098575 AluYa5 310 - 0 310 88786 310 chain 88071 chrX 155270560 + 108098575 108099724 L1PA10 4194 + 2969 4112 40347 44 13 4 119 19 21 714 0 1 80 1 0 59 1 0 4 0 1 66 0 1 29 chain 47898 chrX 155270560 + 108101381 108101911 L1PA4 6152 - 9 540 60558 146 0 1 384 chain 34630 chrX 155270560 + 108101912 108102311 L1P1 4361 + 69 468 76717 399 chain 17072 chrX 155270560 + 108112107 108112327 AluSp 311 + 86 301 135398 46 2 0 96 3 0 73 chain 19401 chrX 155270560 + 108138797 108139100 THE1B 368 + 0 307 128946 169 1 0 17 24 31 13 1 0 9 5 4 64 chain 2776 chrX 155270560 + 108144013 108144045 L1PB1 5432 + 5244 5276 229078 32 chain 4068 chrX 155270560 + 108144050 108144156 L1PB1 5432 + 5280 5370 206338 16 3 0 17 8 0 11 28 23 23 chain 2620 chrX 155270560 + 108144157 108144192 L1PB1 5432 + 5370 5404 231424 21 1 0 13 chain 342714 chrX 155270560 + 108147123 108151202 L1P1 4361 + 4 4319 11816 289 31 260 85 0 1 85 0 1 1931 1 0 4 1 2 213 4 0 384 0 2 6 0 2 158 1 0 723 1 0 112 0 8 35 1 0 14 chain 26840 chrX 155270560 + 108153230 108153634 LTR7 482 + 0 441 96844 100 21 15 108 8 40 28 14 15 8 0 10 117 chain 32060 chrX 155270560 + 108153662 108154035 L1PA5 6144 + 5768 6141 80755 373 chain 3785 chrX 155270560 + 108158693 108158739 MLT1A 405 + 301 346 210592 33 1 0 12 chain 16607 chrX 155270560 + 108161799 108161985 L1PA3long 6157 - 0 185 136650 20 1 0 165 chain 25016 chrX 155270560 + 108172650 108172980 THE1C 375 - 43 371 104706 261 12 10 57 chain 64685 chrX 155270560 + 108172991 108173821 THE1C-int 1605 - 7 840 50702 287 13 16 530 chain 157616 chrX 155270560 + 108176941 108178697 L1PA3long 6157 - 5 1762 23644 149 0 1 1607 chain 395132 chrX 155270560 + 108182150 108187444 L1PA8 5853 - 9 5803 10277 83 2 1 19 2 1 46 1 0 15 1 0 71 13 530 69 3 0 10 3 2 263 1 2 329 1 2 37 9 0 148 3 1 44 8 7 4 0 1 433 1 0 69 5 6 310 1 2 118 5 0 66 0 1 336 0 7 338 10 5 80 0 1 112 0 1 197 12 10 41 2 3 39 6 0 6 2 10 7 2 0 67 17 18 90 1 2 362 0 1 297 0 8 231 1 4 458 5 40 40 0 1 34 18 6 194 74 36 22 chain 24014 chrX 155270560 + 108200534 108200901 THE1D 372 + 0 372 110249 97 7 8 63 36 40 31 0 1 100 1 0 32 chain 4861 chrX 155270560 + 108201838 108201897 L1PA8 5853 + 5794 5853 196665 59 chain 75801 chrX 155270560 + 108211690 108212737 MER11C 1089 + 0 1063 45594 246 0 9 58 0 4 69 1 0 147 72 71 86 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 2034 chrX 155270560 + 108214533 108214556 L1PB1 5432 + 5124 5147 238317 23 chain 14262 chrX 155270560 + 108214573 108214860 L1PB1 5432 + 5159 5424 143674 10 3 1 50 2 1 16 1 0 42 5 4 13 1 0 4 19 8 18 9 6 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 52147 chrX 155270560 + 108216116 108216722 THE1A-int 1579 + 972 1579 57528 561 0 1 45 chain 23458 chrX 155270560 + 108216722 108217032 THE1A 353 + 0 306 113332 12 6 4 94 1 0 92 1 0 104 chain 20245 chrX 155270560 + 108217620 108217899 L1MA3 4352 + 680 962 126394 93 2 0 104 6 11 74 chain 55116 chrX 155270560 + 108222332 108223156 L1PB2 3958 - 127 950 55632 56 2 1 20 13 11 61 11 10 54 1 0 73 1 0 94 1 0 13 2 0 7 6 16 41 10 0 11 0 3 51 2 0 112 0 3 109 0 3 46 11 12 16 chain 28801 chrX 155270560 + 108225781 108226084 AluYa5 310 - 7 310 89895 303 chain 14049 chrX 155270560 + 108231481 108231650 L1PA4 6152 - 9 178 144383 169 chain 65093 chrX 155270560 + 108235093 108235980 L1PA8 5853 - 0 896 50531 77 0 11 5 1 0 17 1 0 41 15 14 9 1 0 69 2 0 38 0 3 6 4 0 465 19 21 59 9 12 49 chain 68468 chrX 155270560 + 108235995 108236876 L1P3 4156 + 2848 3729 49059 38 0 4 322 0 1 255 0 2 24 7 0 25 5 1 26 0 4 179 chain 34806 chrX 155270560 + 108241376 108241992 L1PB1 5432 - 42 626 76464 20 1 0 24 17 14 5 2 0 30 17 4 12 1 0 45 5 4 13 6 5 35 0 2 10 17 11 10 1 0 8 1 0 14 0 1 8 5 0 9 8 3 105 0 1 181 0 4 6 chain 135383 chrX 155270560 + 108242032 108243679 L1PA8A 6298 - 8 1656 26944 720 0 2 35 0 1 42 2 1 274 1 0 573 chain 120153 chrX 155270560 + 108248599 108250155 L1PA7 6471 + 4916 6469 31007 39 1 0 31 14 16 416 1 2 94 16 17 90 1 0 89 2 0 130 0 1 381 0 5 94 1 2 127 16 6 13 chain 521533 chrX 155270560 + 108253633 108260064 L1PA5 6144 + 14 6143 5006 423 1 2 541 4 1 830 0 1 381 0 2 543 0 1 522 0 3 245 6 0 6 3 9 149 1 0 59 0 1 37 0 2 90 0 2 1111 1 0 198 311 0 780 44 45 145 chain 27013 chrX 155270560 + 108258796 108259094 AluYd8 298 + 0 298 96245 298 chain 21874 chrX 155270560 + 108261820 108262115 AluSc5 308 - 13 308 120734 144 15 15 136 chain 497290 chrX 155270560 + 108262570 108268699 L1PA6 6164 - 8 6161 6997 121 0 1 566 9 18 92 0 1 547 1 3 177 0 1 4 9 8 251 3 7 656 0 2 178 0 1 280 0 4 42 2 1 8 0 1 846 12 7 155 1 0 160 4 0 295 0 1 918 0 17 75 0 1 142 5 4 116 8 0 446 chain 113213 chrX 155270560 + 108278147 108279386 L1PA3long 6157 + 4906 6149 33311 488 0 5 608 2 1 141 chain 384546 chrX 155270560 + 108297835 108302024 L1PA2 6032 + 1844 6032 10628 588 1 0 3600 chain 526680 chrX 155270560 + 108309884 108315967 L1PA4 6152 - 9 6152 4530 325 0 1 95 0 1 413 0 4 946 0 4 946 3 4 233 2 0 202 0 6 409 1 0 217 0 10 2119 30 66 142 chain 8621 chrX 155270560 + 108316153 108316254 L1PA5 6144 - 0 101 167629 101 chain 293079 chrX 155270560 + 108316996 108320805 L1P2 5180 - 2 3813 13821 4 1 0 20 0 1 17 1 0 47 1 0 165 1 2 216 0 1 61 5 3 717 0 1 216 23 12 374 0 3 5 30 26 99 1 0 10 0 2 13 1 5 689 10 12 139 0 1 57 0 1 47 1 3 168 1 2 186 1 2 162 6 8 314 chain 490940 chrX 155270560 + 108326566 108332949 L1PA7 6471 - 4 6471 7321 8 0 1 118 18 12 5 0 3 106 0 1 226 0 1 186 5 3 172 9 8 124 17 15 74 0 1 191 8 8 379 1 2 121 0 1 468 0 1 45 0 2 11 11 19 27 1 0 6 27 28 299 6 5 184 1 0 49 0 4 55 0 1 102 1 2 15 0 1 20 1 2 42 0 2 146 0 1 60 0 4 196 0 2 207 8 2 37 0 1 62 0 1 103 1 0 345 11 13 212 0 5 6 10 1 203 0 66 275 13 13 932 5 6 412 chain 163617 chrX 155270560 + 108335129 108336978 L1PA4 6152 - 9 1854 22858 657 3 0 183 0 2 228 4 0 307 0 1 99 0 1 251 1 0 116 chain 159016 chrX 155270560 + 108354379 108356177 L1PA5 6144 - 9 1808 23460 769 0 1 632 1 2 109 1 0 286 chain 551667 chrX 155270560 + 108356537 108362563 L1PA2 6032 + 1 6032 1228 3385 0 1 842 0 4 1799 chain 24751 chrX 155270560 + 108381432 108381744 L1PA7 6471 - 1164 1475 106165 4 1 0 17 0 1 6 1 0 283 chain 91619 chrX 155270560 + 108381756 108382897 L1PA7 6471 + 5299 6467 39086 245 1 0 4 0 1 161 1 0 56 0 26 52 0 1 191 21 22 409 chain 126491 chrX 155270560 + 108418001 108419392 L1PA2 6032 - 2 1393 28945 1391 chain 11464 chrX 155270560 + 108419392 108419528 L1PA2 6032 + 3251 3387 154453 136 chain 114191 chrX 155270560 + 108419528 108420776 L1PA2 6032 + 3388 4636 33031 1248 chain 4813 chrX 155270560 + 108421918 108422008 LTR7A 91 + 0 85 197196 14 2 0 7 5 3 51 2 1 9 chain 285806 chrX 155270560 + 108422023 108425685 HERVH-int 3825 + 0 3825 14297 56 0 3 153 0 11 307 1 0 11 1 0 4 0 1 26 1 0 8 1 0 9 4 0 14 30 1 14 1 0 13 3 0 14 9 7 4 1 0 20 24 21 23 20 0 9 1 0 50 0 1 4 2 0 453 6 7 186 10 0 205 0 1 109 0 2 26 2 6 227 0 4 368 39 40 652 9 11 39 8 218 260 0 2 225 chain 511019 chrX 155270560 + 108434944 108441347 L1PA7 6471 + 5 6463 6066 402 1 0 207 1 2 55 0 1 217 0 1 4 1 0 91 16 10 253 0 1 294 4 0 210 1 0 736 1 0 150 0 2 551 0 3 173 1 0 116 4 2 164 0 1 121 0 1 5 1 0 252 0 36 355 0 1 210 0 1 43 0 4 234 0 1 298 0 7 54 2 1 55 0 1 283 0 3 61 3 9 444 0 3 329 chain 432602 chrX 155270560 + 108445924 108452273 L1PA8 5853 - 0 5745 9247 92 6 5 15 2 1 49 4 0 12 1 0 71 2 0 44 1 0 43 0 1 143 6 39 248 1 2 73 679 10 670 0 1 67 1 2 144 0 1 268 1 9 107 0 3 349 0 1 32 0 16 120 2 1 130 13 7 85 0 1 103 1 0 229 0 2 113 0 1 411 4 5 109 3 0 5 24 7 13 5 3 119 1 0 342 6 4 179 1 2 29 0 1 170 1 0 362 12 15 118 1 0 6 0 46 284 23 11 194 chain 56348 chrX 155270560 + 108446737 108447408 L1PA7 6471 - 1 671 54936 9 2 0 442 0 1 218 chain 7376 chrX 155270560 + 108453435 108453589 L1PB1 5432 - 28 163 174925 11 1 0 23 1 0 24 2 0 14 1 0 9 2 0 15 27 16 12 1 0 11 chain 23996 chrX 155270560 + 108455369 108455792 L1PA8 5853 + 5434 5853 110352 130 7 5 32 20 18 60 1 0 12 2 1 8 1 0 12 25 29 12 21 20 80 chain 164780 chrX 155270560 + 108467334 108469518 L1PA8 5853 + 3622 5813 22681 76 1 0 205 0 2 435 1 0 155 14 13 4 0 1 269 0 8 209 3 0 69 1 8 202 0 1 149 13 14 122 1 0 44 2 0 70 29 27 35 2 1 19 2 1 52 chain 429913 chrX 155270560 + 108472021 108477309 L1PA6 6164 + 0 6162 9309 145 50 51 41 1 3 88 34 35 148 6 8 48 1 0 119 0 1 1647 2 0 828 1 0 4 0 1 10 13 15 203 0 1 298 1 0 8 10 11 645 0 4 73 0 861 855 0 2 9 chain 29528 chrX 155270560 + 108479211 108479661 LTR10F 562 - 47 562 86534 32 10 8 194 0 34 11 10 6 45 1 60 12 27 0 27 0 5 81 chain 197528 chrX 155270560 + 108479958 108483014 HERVIP10FH-int 2884 - 63 2723 19386 32 10 4 13 1 0 16 1 0 51 1 0 66 1 0 365 1 0 23 1 0 23 1 5 173 1 0 225 0 5 12 9 12 13 5 4 15 15 4 38 22 10 45 19 1 14 62 39 13 6 4 132 5 0 38 19 18 9 1 0 11 3 0 8 4 1 76 291 0 99 2 0 132 5 1 354 1 3 30 0 1 52 1 0 231 8 0 192 12 0 47 chain 7658 chrX 155270560 + 108485477 108485574 LTR10F 562 - 18 113 173173 69 2 0 26 chain 505758 chrX 155270560 + 108486225 108492394 L1PA6 6164 - 2 6164 6480 155 10 11 1218 15 0 403 0 1 95 0 3 415 8 11 147 1 0 464 1 2 47 0 1 11 2 1 405 0 1 378 0 1 149 0 1 86 0 1 325 1 0 576 3 0 72 3 0 615 1 0 46 0 2 280 11 13 226 chain 21000 chrX 155270560 + 108497753 108497978 L1PA3long 6157 - 8 233 123923 225 chain 53183 chrX 155270560 + 108520726 108521395 LTR12_ 688 - 1 688 56902 543 1 2 27 8 25 90 chain 118003 chrX 155270560 + 108522834 108524286 HERV9-int 5642 - 856 3254 31802 465 19 27 124 0 3 215 7 942 212 10 9 105 1 0 180 4 5 37 0 1 73 chain 46408 chrX 155270560 + 108536543 108537067 L1PA5 6144 + 5616 6142 61678 388 0 2 136 chain 26178 chrX 155270560 + 108556770 108557090 L1PA4 6152 - 9 325 99283 199 0 3 92 8 1 21 chain 395254 chrX 155270560 + 108558108 108562969 L1PA7 6471 - 10 4833 10271 63 15 14 423 1 0 167 0 1 46 1 2 124 1 0 417 1 0 1157 23 1 42 6 0 507 8 1 67 0 22 139 0 2 177 2 3 258 1 0 55 2 0 134 24 0 730 0 1 270 chain 107422 chrX 155270560 + 108565445 108566981 L1PB1 5432 - 141 1708 34860 10 1 0 44 1 0 18 1 0 11 3 4 36 2 0 9 5 1 13 4 3 4 1 0 24 3 0 8 0 14 201 0 12 228 12 23 45 0 4 8 3 1 5 0 2 183 4 3 67 1 0 114 12 13 38 0 1 87 3 4 314 1 3 12 chain 26518 chrX 155270560 + 108570014 108570369 L1PBa 3878 + 1719 2072 97980 97 1 0 5 1 2 70 3 1 178 chain 523133 chrX 155270560 + 108573050 108579191 L1PA5 6144 - 4 6144 4855 181 0 1 430 0 1 233 1 0 413 0 1 252 1 0 473 1 2 476 2 0 519 1 0 370 2 1 473 0 1 163 0 1 1153 2 1 270 1 2 187 1 0 338 0 1 4 1 0 193 chain 3729 chrX 155270560 + 108579198 108579245 L1PREC2 3366 - 2921 2968 211490 47 chain 17476 chrX 155270560 + 108579358 108579707 L1PREC2 3366 - 2883 3217 134315 12 2 1 5 0 1 6 1 0 53 1 0 55 0 1 60 1 0 32 2 0 12 15 13 13 48 40 9 1 0 21 chain 15477 chrX 155270560 + 108596950 108597153 Tigger1 2417 + 2208 2408 139974 45 2 0 84 1 0 71 chain 23926 chrX 155270560 + 108606475 108606781 Tigger2 2703 - 126 431 110777 210 2 1 94 chain 132123 chrX 155270560 + 108650210 108651756 THE1A-int 1579 + 17 1579 27614 199 0 1 839 0 15 508 chain 26395 chrX 155270560 + 108651756 108652109 THE1A 353 + 0 353 98432 84 0 1 16 20 19 233 chain 39198 chrX 155270560 + 108668294 108669028 L1PB1 5432 + 4836 5427 70458 106 11 7 153 104 1 11 1 0 20 1 0 13 1 0 9 2 0 3 2 0 9 6 4 48 2 1 16 1 0 44 2 1 14 1 0 4 2 0 13 9 0 14 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 4 0 9 chain 136109 chrX 155270560 + 108677783 108679264 L1PA3long 6157 - 927 2408 26814 1481 chain 81801 chrX 155270560 + 108679275 108680174 L1PA3long 6157 + 5258 6157 42841 899 chain 6067 chrX 155270560 + 108688775 108688840 L1P1 4361 - 550 615 183136 65 chain 193028 chrX 155270560 + 108688840 108691005 L1PA5 6144 + 3969 6135 19766 1569 0 1 596 chain 81218 chrX 155270560 + 108733003 108733891 L1PA3long 6157 - 10 897 43076 757 1 0 130 chain 79902 chrX 155270560 + 108739523 108740663 L1MA2 4263 - 214 1353 43640 82 2 1 9 2 1 150 21 18 75 0 2 5 2 0 44 1 0 76 6 2 257 13 21 192 13 12 4 0 1 58 1 2 127 chain 29312 chrX 155270560 + 108741226 108741610 MLT2A1 477 + 0 383 87506 169 4 1 11 0 1 20 1 2 179 chain 30237 chrX 155270560 + 108756150 108756699 L1PB1 5432 + 4922 5427 84091 114 2 3 64 23 11 24 8 6 12 11 7 5 2 0 52 2 1 15 1 0 45 1 0 15 23 12 19 2 0 4 1 0 15 2 0 24 1 0 21 4 3 10 1 0 18 3 0 5 chain 71538 chrX 155270560 + 108760384 108761928 L1MA1 4479 + 2999 4190 47679 26 0 1 132 2 0 17 4 0 76 1 0 12 4 0 41 13 8 76 2 0 11 0 6 11 321 0 80 1 0 7 13 0 4 21 0 11 2 0 107 0 48 42 7 6 34 1 0 71 1 0 7 21 20 6 1 0 74 2 0 4 8 0 9 1 0 6 3 0 38 0 1 39 5 4 41 4 3 29 2 0 29 7 6 9 1 0 11 3 1 9 6 0 18 chain 478486 chrX 155270560 + 108763704 108768985 L1PA3long 6157 + 869 6157 7782 861 0 1 594 0 1 2979 1 2 707 1 5 138 chain 103410 chrX 155270560 + 108782103 108783347 L1PA7 6471 - 8 1287 35896 6 7 0 229 4 3 538 3 9 60 0 4 23 0 1 7 0 1 9 0 16 193 0 15 165 chain 172528 chrX 155270560 + 108788295 108790408 L1PA6 6164 + 2896 6161 21758 283 7 0 6 4 0 4 0 1 84 20 1188 217 1 0 236 1 9 340 24 0 51 4 8 40 1 6 336 0 2 454 chain 39697 chrX 155270560 + 108794132 108794688 MER41A 554 + 0 554 69759 212 9 6 138 12 14 61 1 0 49 0 1 4 5 4 65 chain 165548 chrX 155270560 + 108796342 108798646 MER41-int 2638 + 363 2636 22583 86 15 14 24 1 5 50 0 2 31 18 20 110 42 9 88 6 20 208 1 0 42 7 0 21 3 6 30 1 0 198 1 0 162 2 1 178 1 0 63 14 1 125 10 8 10 2 0 136 1 0 84 1 0 7 2 0 16 0 1 106 1 3 82 0 1 95 1 6 25 0 1 88 0 1 109 chain 42183 chrX 155270560 + 108798657 108799188 MER41A 554 + 0 542 66419 251 0 6 208 0 5 72 chain 7116 chrX 155270560 + 108818711 108818834 MSTB1-int 1597 + 1421 1574 176643 31 0 28 10 1 2 36 12 13 33 chain 37382 chrX 155270560 + 108819284 108819841 LTR7B 505 + 0 505 72985 194 71 0 35 7 28 184 14 13 13 5 6 7 2 0 25 chain 49681 chrX 155270560 + 108838629 108839279 L1PA8 5853 - 0 643 59248 93 1 0 19 2 1 32 1 0 4 0 1 15 2 1 8 5 4 65 2 0 42 9 8 350 chain 32871 chrX 155270560 + 108840677 108841119 MLT2A1 477 + 0 477 79419 142 0 1 26 0 4 151 1 0 57 23 54 42 chain 473696 chrX 155270560 + 108847033 108852780 L1PA7 6471 + 718 6466 7924 773 19 18 725 5 6 6 0 1 207 42 8 57 1 3 69 1 2 41 0 2 191 0 22 602 2 7 26 3 2 63 0 4 32 0 2 40 3 0 5 0 3 618 0 1 19 3 0 214 0 1 467 2 0 29 5 6 631 1 0 845 chain 66107 chrX 155270560 + 108856973 108857698 L1PA5 6144 + 5408 6132 50051 623 1 0 101 chain 8053 chrX 155270560 + 108876425 108876519 L1PA6 6164 - 5 98 170734 7 1 0 86 chain 23079 chrX 155270560 + 108879330 108879709 THE1C 375 + 0 375 115253 14 2 0 46 25 26 100 0 1 23 22 24 13 10 4 124 chain 57475 chrX 155270560 + 108880634 108881340 L1PA8 5853 - 0 705 54256 5 0 2 86 2 1 15 1 0 55 1 0 10 2 1 18 0 2 34 0 2 14 2 0 44 1 0 416 chain 541491 chrX 155270560 + 108887897 108893917 L1PA3long 6157 + 0 6156 2591 151 1 2 95 0 9 524 0 128 518 0 1 898 1 0 3683 1 0 143 1 0 4 chain 19520 chrX 155270560 + 108896404 108896617 L1PA3long 6157 + 5368 5581 128592 213 chain 52948 chrX 155270560 + 108896618 108897190 L1PA3long 6157 + 5581 6153 57049 572 chain 75797 chrX 155270560 + 108900446 108901295 L1PA5 6144 - 1 847 45597 101 2 0 10 1 0 735 chain 11105 chrX 155270560 + 108902891 108903107 L1MB2 1706 + 368 590 155789 34 55 60 71 1 2 55 chain 129478 chrX 155270560 + 108913853 108915321 SVA_B 1603 + 0 1603 28208 20 1 21 744 0 79 107 5 41 591 chain 28766 chrX 155270560 + 108930614 108930953 L1PA7 6471 + 6119 6458 90038 339 chain 6090 chrX 155270560 + 108950747 108950836 MER1B 344 - 226 319 184489 26 6 10 57 chain 7105 chrX 155270560 + 108951926 108952128 Tigger4a 237 + 11 112 176729 90 101 0 11 chain 14598 chrX 155270560 + 108960997 108961186 MER30B 195 + 0 187 142599 83 2 0 104 chain 23929 chrX 155270560 + 108962933 108963230 AluSp 311 + 1 290 110758 76 8 0 213 chain 23216 chrX 155270560 + 108968714 108968997 AluY 311 + 5 311 114612 160 0 23 123 chain 7895 chrX 155270560 + 108987884 108987978 HY1 111 - 17 111 171682 94 chain 132543 chrX 155270560 + 108991223 108993112 LTR12C 1709 - 0 1709 27515 77 6 5 399 44 13 84 132 0 13 31 1 5 1 0 275 1 0 292 2 3 77 1 2 63 18 30 69 6 7 33 1 2 216 12 3 10 0 9 21 chain 2265 chrX 155270560 + 108991833 108991881 LTR12C 1709 - 541 576 235794 8 13 0 27 chain 6365 chrX 155270560 + 108991881 108991965 LTR12C 1709 - 623 707 74600 84 chain 2349 chrX 155270560 + 108991978 108992009 LTR12C 1709 - 720 751 74600 31 chain 126498 chrX 155270560 + 109000001 109002025 L1MA2 4263 + 2274 4218 28943 46 1 0 212 5 0 24 20 24 63 56 54 59 24 0 145 1 3 417 1 12 13 7 6 115 0 5 111 6 2 77 1 0 57 0 1 88 3 0 51 0 25 74 19 17 83 33 11 36 1 0 9 134 74 14 1 0 4 1 0 12 chain 43285 chrX 155270560 + 109005237 109005874 HSMAR2 1300 - 56 699 65070 66 14 22 44 17 15 156 0 18 10 30 12 300 chain 23646 chrX 155270560 + 109005874 109006155 L1PA7 6471 + 6187 6466 112327 272 2 0 7 chain 4595 chrX 155270560 + 109043875 109043933 L1MDa 1598 + 496 556 199688 47 0 2 11 chain 11563 chrX 155270560 + 109055845 109056004 L1PA8 5853 + 5696 5853 154053 44 2 1 19 2 1 92 chain 37060 chrX 155270560 + 109066800 109067297 MER75 514 + 0 514 73442 17 5 21 260 14 15 201 chain 32936 chrX 155270560 + 109072271 109072731 LTR7B 505 + 0 503 79312 105 0 10 69 6 13 28 3 27 26 0 2 42 0 1 42 1 0 23 0 1 52 14 13 49 chain 119475 chrX 155270560 + 109076747 109078055 L1P1 4361 + 2620 3928 31231 1308 chain 5577 chrX 155270560 + 109095054 109095147 MER63A 208 + 81 208 189308 44 19 53 30 chain 16925 chrX 155270560 + 109099759 109100050 L1PA16 3655 + 3358 3619 135784 146 3 2 6 0 1 65 57 27 14 chain 39702 chrX 155270560 + 109109302 109109772 LTR7Y 441 - 0 441 69752 100 0 2 174 31 0 165 chain 287944 chrX 155270560 + 109110217 109113650 HERVH-int 3825 - 63 3825 14163 424 8 218 10 1 2 27 9 11 116 0 1 77 5 7 168 0 4 521 0 1 67 0 2 81 0 10 299 4 31 903 0 3 14 0 2 6 0 1 57 2 1 42 0 37 15 29 0 24 1 0 10 1 0 12 0 58 500 chain 41364 chrX 155270560 + 109113650 109114091 LTR7Y 441 - 0 441 67453 441 chain 12052 chrX 155270560 + 109118374 109119038 LTR12C 1709 - 190 940 151976 25 455 382 85 31 190 68 chain 3678 chrX 155270560 + 109118742 109118802 LTR12C 1709 - 679 1033 212269 16 2 296 42 chain 23474 chrX 155270560 + 109120039 109120311 AluSc5 308 - 26 298 113252 272 chain 548202 chrX 155270560 + 109138702 109144857 L1PA4 6152 - 9 6152 1680 93 2 0 238 1 0 11 0 1 860 3 0 3542 7 0 1398 chain 132026 chrX 155270560 + 109149734 109151514 L1PB1 5432 - 41 1809 27631 45 2 0 11 11 8 19 13 5 7 3 0 15 1 0 44 19 17 53 2 0 9 13 11 9 1 0 21 18 14 288 0 8 15 8 0 171 7 12 157 0 1 452 0 2 34 0 1 230 4 7 45 0 4 53 chain 74494 chrX 155270560 + 109155001 109155827 L1PA5 6144 - 1408 2234 46279 826 chain 124007 chrX 155270560 + 109155827 109157212 L1PA5 6144 + 4751 6138 29702 543 0 1 87 0 1 755 chain 52586 chrX 155270560 + 109175317 109175918 L1PA5 6144 - 3 607 57242 139 1 2 193 0 2 268 chain 168689 chrX 155270560 + 109228301 109230553 L1PA6 6164 - 2 1942 22199 329 0 1 62 4 0 76 322 0 34 0 1 4 3 2 254 0 1 155 0 1 883 0 11 126 chain 35881 chrX 155270560 + 109239139 109239651 MER1A 529 - 0 497 75028 63 53 39 56 4 3 336 chain 40641 chrX 155270560 + 109243979 109244560 MER41B 635 - 24 635 68383 25 8 12 13 13 9 43 0 1 40 13 12 124 4 34 161 1 0 10 0 1 126 chain 34000 chrX 155270560 + 109274140 109274550 L1PA7 6471 - 6 416 77618 410 chain 55848 chrX 155270560 + 109277856 109278458 L1PA3long 6157 + 5555 6157 55216 602 chain 28858 chrX 155270560 + 109281212 109281518 AluYa5 310 - 5 310 89628 195 1 0 110 chain 2670 chrX 155270560 + 109298567 109298658 MER91C 135 + 30 120 230783 13 14 11 12 25 27 27 chain 12262 chrX 155270560 + 109302899 109303074 MER30 238 + 47 238 151145 60 18 34 97 chain 6340 chrX 155270560 + 109310101 109310189 MER53 195 - 100 190 182457 19 1 3 68 chain 15974 chrX 155270560 + 109323036 109323218 L1PA3long 6157 + 5975 6157 138436 182 chain 21914 chrX 155270560 + 109323221 109323506 HSMAR2 1300 - 971 1261 120570 12 0 3 19 1 0 4 0 1 219 2 3 4 0 1 24 chain 528417 chrX 155270560 + 109333938 109340041 L1PA5 6144 - 0 6142 4363 171 0 1 2389 0 21 230 0 3 159 1 0 120 0 1 460 0 3 214 0 2 56 0 4 1120 0 1 19 9 0 826 1 0 210 1 15 117 chain 7432 chrX 155270560 + 109346946 109347031 Tigger2b_Pri 1066 - 367 452 174563 85 chain 6382 chrX 155270560 + 109365126 109365229 Tigger4a 237 - 1 121 182172 56 13 30 34 chain 48736 chrX 155270560 + 109365276 109365809 L1PA3long 6157 + 5620 6157 59924 482 0 4 51 chain 8222 chrX 155270560 + 109376185 109376293 MLT1B 390 - 35 142 169825 100 1 0 7 chain 12541 chrX 155270560 + 109396776 109397184 MER2 342 - 0 203 150074 40 2 0 7 5 2 30 13 14 38 201 0 72 chain 10812 chrX 155270560 + 109396950 109397112 MER30 238 + 49 238 156932 47 12 33 24 2 8 77 chain 3637 chrX 155270560 + 109461695 109461747 L1MB3 1562 - 79 129 213026 44 2 0 6 chain 76744 chrX 155270560 + 109464976 109465830 L1PA2 6032 + 5169 6030 45106 6 1 0 4 0 1 78 0 2 752 1 6 12 chain 519901 chrX 155270560 + 109472766 109479197 L1PA6 6164 + 2 6162 5172 235 0 2 23 1 0 256 0 2 47 1 0 891 6 9 307 0 14 537 0 1 761 314 0 98 4 0 81 0 4 426 0 1 207 0 2 170 0 1 104 0 1 461 1 0 627 4 0 46 14 18 349 0 18 367 0 1 93 chain 225496 chrX 155270560 + 109481642 109484750 L1P2 5180 + 446 3432 17559 60 11 1 8 1 0 46 57 0 4 19 0 13 15 16 144 21 0 49 0 15 224 18 19 4 1 0 73 6 8 237 0 1 137 9 5 329 12 8 429 0 1 50 19 0 58 5 1 186 1 5 349 7 3 260 3 0 243 chain 16707 chrX 155270560 + 109484750 109484940 L1PA7 6471 + 6172 6362 136125 190 chain 57703 chrX 155270560 + 109509916 109510607 L1PA7 6471 - 1 693 54133 11 2 0 52 1 0 275 0 1 276 0 3 74 chain 23091 chrX 155270560 + 109520515 109520808 L1PA5 6144 + 5856 6142 115193 13 0 1 100 6 2 163 4 0 7 chain 3256 chrX 155270560 + 109538049 109538088 MADE1 96 + 57 96 219853 39 chain 7915 chrX 155270560 + 109557200 109557312 MER5A 189 + 33 146 171554 41 5 6 66 chain 71245 chrX 155270560 + 109571698 109572548 L1PA7 6471 - 1 855 47834 12 0 2 382 8 7 212 0 3 236 chain 56424 chrX 155270560 + 109576524 109577207 L1PA7 6471 + 5775 6468 54894 196 0 1 11 0 7 285 15 12 165 0 5 11 chain 3877 chrX 155270560 + 109580334 109580477 MIRb 242 + 53 188 209193 15 2 0 21 22 21 14 45 40 24 chain 238631 chrX 155270560 + 109586084 109588730 L1PA5 6144 + 3495 6141 16845 2646 chain 4765 chrX 155270560 + 109592508 109592566 MLT1A 405 - 45 103 197755 58 chain 26096 chrX 155270560 + 109620981 109621260 AluY 311 + 26 306 99636 106 0 1 173 chain 50374 chrX 155270560 + 109649343 109649967 L1PA7 6471 - 1 634 58729 11 0 6 145 0 1 405 5 7 58 chain 239003 chrX 155270560 + 109710343 109713257 L1PA7 6471 - 7 2932 16830 5 2 0 613 3 4 218 0 4 14 0 4 293 0 4 137 18 18 890 0 3 5 3 0 47 1 0 4 6 7 655 chain 16731 chrX 155270560 + 109720487 109720843 L1M1 2793 - 1798 2132 136309 30 6 13 41 21 18 54 1 0 8 2 0 29 1 0 30 12 7 20 2 0 5 2 0 11 40 27 41 chain 26570 chrX 155270560 + 109723205 109723546 L1PA15 4387 - 3465 3806 97760 341 chain 113067 chrX 155270560 + 109724820 109726831 L1PA7 6471 + 5063 6467 33358 404 0 3 145 1 3 80 0 2 98 617 0 401 0 2 118 4 5 143 chain 271497 chrX 155270560 + 109730957 109735133 L1PBa 3878 - 85 3788 15112 13 5 3 5 1 0 11 19 13 11 2 0 21 2 1 259 1 0 5 13 15 216 12 9 81 1 0 78 1 2 342 0 3 124 0 2 72 0 1 46 1 0 131 0 4 478 0 26 101 0 1 4 1 0 26 302 0 67 4 0 8 132 4 161 0 2 131 0 3 95 8 4 296 0 1 296 14 4 95 2 1 103 0 1 179 3 1 25 1 0 44 84 36 31 2 1 10 chain 3231 chrX 155270560 + 109782490 109782531 L1MD1 2063 + 1325 1365 220393 29 1 0 11 chain 450837 chrX 155270560 + 109789896 109795030 L1PA4 6152 + 0 6152 8745 163 2 742 170 5 17 84 0 1 1429 0 257 665 0 3 2610 0 5 6 chain 254129 chrX 155270560 + 109797687 109801039 L1PA8 5853 - 4 3497 16024 88 2 1 19 2 1 38 0 2 9 1 4 8 1 0 71 9 7 37 1 0 21 1 0 455 0 1 78 14 11 64 0 1 4 1 0 9 0 1 152 0 1 406 0 1 392 3 5 6 2 0 233 3 4 16 1 2 108 0 1 237 0 120 271 0 9 17 0 4 449 0 6 123 chain 2755 chrX 155270560 + 109801478 109801773 SVA_F 1814 - 970 1109 229432 21 247 91 27 chain 133786 chrX 155270560 + 109802134 109804093 L1PA10 4194 - 2079 3997 27264 183 1 0 111 2 1 61 5 1 24 3 1 149 0 3 9 0 1 428 0 1 232 0 1 5 1 0 66 11 15 265 11 34 40 7 5 76 1 0 7 0 1 3 6 0 12 5 0 9 19 9 6 1 0 21 2 0 22 45 19 7 1 0 16 2 0 21 1 0 5 5 4 9 2 0 9 14 10 6 2 0 10 chain 2847 chrX 155270560 + 109806394 109806424 MIRc 230 + 103 133 227885 30 chain 11227 chrX 155270560 + 109813796 109814002 L1MA7 2200 - 269 475 155320 54 32 32 16 1 0 6 8 9 89 chain 87415 chrX 155270560 + 109825089 109826186 MER11A 1151 + 0 1147 40599 77 0 8 145 1 0 64 0 11 69 2 1 467 0 1 7 0 23 13 0 9 90 12 13 84 6 5 60 chain 42847 chrX 155270560 + 109833510 109834070 PRIMA4_LTR 623 - 8 623 65596 158 14 11 59 0 59 66 0 1 73 4 0 98 1 3 87 chain 8571 chrX 155270560 + 109834816 109834923 PRIMA4_LTR 623 - 515 621 167903 84 1 0 22 chain 97352 chrX 155270560 + 109845828 109847551 L1PA4 6152 - 0 1106 37435 861 631 14 231 chain 56457 chrX 155270560 + 109846698 109847320 L1PA3long 6157 - 0 622 54875 622 chain 47331 chrX 155270560 + 109847551 109849047 L1PA7 6471 + 2158 3613 12420 318 9 10 155 33 9 44 24 1 202 1 2 201 0 4 102 0 3 10 0 1 4 4 2 151 0 1 106 3 2 43 2 0 84 chain 539653 chrX 155270560 + 109849062 109855079 L1PA3long 6157 + 4 6157 2867 148 0 1 589 1 0 37 1 129 169 0 1 3282 0 4 277 1 0 669 0 4 843 chain 85741 chrX 155270560 + 109855096 109857806 L1PA7 6471 + 3613 6332 12420 169 0 1 45 5 0 156 0 1 23 0 1 666 1 5 87 0 1 360 0 1 492 0 3 161 8 10 537 chain 406627 chrX 155270560 + 109859253 109864719 L1PB1 5432 - 21 5420 9893 7 1 0 34 1 0 12 19 17 10 1 0 4 2 0 30 13 1 16 1 0 44 18 16 51 2 0 11 16 11 10 1 0 23 1 0 11 67 0 7 9 13 37 2 1 44 1 0 375 6 22 872 1 5 36 0 1 853 1 0 339 2 0 393 0 1 400 6 5 232 0 1 52 7 10 300 0 7 328 5 6 131 0 4 33 0 4 164 24 24 86 9 0 81 0 1 216 1 0 7 chain 526311 chrX 155270560 + 109869243 109875692 L1PA7 6471 + 3 6469 4562 400 5 0 816 1 2 274 0 3 57 1 0 115 0 1 465 0 1 4 1 0 148 0 1 349 6 7 216 0 1 7 0 1 292 2 5 335 2 0 16 5 4 30 1 2 16 1 5 298 0 1 171 1 2 45 0 1 297 5 4 494 0 5 727 5 8 10 8 7 823 chain 51317 chrX 155270560 + 109881134 109881721 L1PA5 6144 + 5559 6144 58092 253 0 1 326 3 0 5 chain 533987 chrX 155270560 + 109883247 109889391 L1PA4 6152 - 9 6151 3702 61 4 5 771 3 1 510 5 0 1581 0 1 766 0 2 132 2 0 1148 1 4 1160 chain 92729 chrX 155270560 + 109897226 109898369 L1PA10 4194 + 3006 4148 38738 471 1 4 595 1 0 40 3 0 32 chain 507491 chrX 155270560 + 109900131 109906269 L1PA6 6164 + 0 6158 6365 246 1 2 103 3 6 92 8 0 120 1 0 225 1 18 148 0 1 281 1 2 11 0 1 583 0 1 490 2 5 835 1 0 19 0 1 332 6 7 1875 3 2 425 0 1 144 1 2 4 1 0 176 chain 26360 chrX 155270560 + 109950498 109950806 L1PA7 6471 + 4938 5245 98571 268 1 0 39 chain 75965 chrX 155270560 + 109950807 109951701 L1PA7 6471 + 5245 6144 45502 583 0 3 210 0 1 94 0 1 7 chain 8348 chrX 155270560 + 109981116 109981260 MER20 218 + 30 178 169129 46 17 20 57 11 12 13 chain 22531 chrX 155270560 + 109981705 109981982 AluY 311 + 17 297 117887 115 0 1 144 1 3 17 chain 5699 chrX 155270560 + 109984083 109984240 MER58A 224 + 47 209 188127 54 73 78 30 chain 89791 chrX 155270560 + 110006373 110008908 L1PB1 5432 - 8 1338 39725 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 14 9 0 17 3 0 15 1 0 44 1 0 16 2 1 8 0 1 44 27 20 9 1 0 21 17 0 18 99 0 234 75 64 170 0 2 19 0 6 205 1061 0 171 6 13 6 1 0 115 chain 77409 chrX 155270560 + 110007554 110008591 MER11A 1151 + 0 1133 44776 55 0 99 140 4 0 94 0 1 39 15 16 85 5 18 137 0 1 150 41 24 58 0 1 53 0 1 161 chain 92585 chrX 155270560 + 110009628 110010819 L1PB 1623 + 102 1290 38791 10 1 0 5 1 0 71 37 40 41 2 1 128 2 1 19 1 0 69 1 0 803 chain 7076 chrX 155270560 + 110017889 110017984 Merlin1_HS 166 - 0 93 176911 40 1 0 19 1 0 34 chain 35614 chrX 155270560 + 110043797 110044206 L1PA5 6144 + 5735 6144 75393 409 chain 17327 chrX 155270560 + 110055944 110056159 MSTB2 466 + 27 242 134721 215 chain 549296 chrX 155270560 + 110059992 110066001 L1PA2 6032 - 11 6029 1538 841 0 4 764 4 0 1247 0 1 910 0 1 1538 0 7 705 chain 186336 chrX 155270560 + 110074473 110076537 L1PA4 6152 - 1 2075 20389 147 0 1 551 0 1 143 0 4 952 0 4 271 chain 23231 chrX 155270560 + 110085731 110086015 AluSc 308 - 13 299 114536 20 0 2 264 chain 26824 chrX 155270560 + 110100505 110100872 THE1B 368 + 0 368 96899 15 2 0 25 0 5 127 4 5 23 12 9 159 chain 11831 chrX 155270560 + 110133311 110133458 L1PA7 6471 + 4670 4818 152897 80 0 1 67 chain 65211 chrX 155270560 + 110133458 110134253 L1PA7 6471 + 4819 5614 50466 128 2 0 6 5 7 654 chain 68803 chrX 155270560 + 110134253 110135105 L1PA7 6471 + 5617 6467 48894 352 5 6 70 4 6 410 5 0 6 chain 505585 chrX 155270560 + 110141629 110147692 L1PA6 6164 - 4 6164 6489 844 0 4 669 1 0 126 6 5 146 0 4 1081 0 2 86 1 3 745 0 3 81 5 27 119 0 2 362 0 7 8 12 5 383 1 3 133 0 55 481 0 3 773 chain 81106 chrX 155270560 + 110151427 110152741 L1P3 4156 - 513 1519 43104 66 0 6 96 8 1 72 310 0 298 0 2 21 0 1 443 chain 231274 chrX 155270560 + 110152741 110155556 L1PA7 6471 + 3647 6468 17243 834 5 7 186 0 4 70 1 0 238 7 6 130 0 1 484 8 7 86 0 2 83 3 4 525 6 5 149 chain 8820 chrX 155270560 + 110165545 110165671 Tigger5 388 - 169 284 166557 83 11 0 32 chain 3334 chrX 155270560 + 110169649 110169685 L1PA7 6471 + 6364 6400 218331 36 chain 6184 chrX 155270560 + 110169689 110169759 L1PA7 6471 + 6400 6470 183703 70 chain 17180 chrX 155270560 + 110174089 110174411 L1PA15 4387 + 4047 4356 135088 57 2 1 26 1 0 54 1 0 20 0 2 5 19 20 33 22 17 34 4 1 12 5 0 27 chain 14250 chrX 155270560 + 110193650 110193854 L1PA8 5853 - 0 200 143718 93 1 0 19 2 1 47 17 15 25 chain 25997 chrX 155270560 + 110213637 110213990 L1PA8 5853 + 5506 5853 100028 56 1 0 47 2 0 70 1 0 61 2 1 19 4 3 90 chain 414001 chrX 155270560 + 110215467 110220343 L1PA6 6164 + 634 6162 9699 69 0 1 17 7 26 46 0 18 219 0 1 1207 0 1 94 0 1 346 0 603 68 1 4 722 0 1 27 3 4 1081 1 2 251 0 1 387 0 1 330 chain 132892 chrX 155270560 + 110266115 110267729 L1PA7 6471 - 4 1608 27410 10 9 0 811 8 7 18 1 0 524 0 1 111 0 1 6 1 0 115 chain 272271 chrX 155270560 + 110267729 110271613 L1PB1 5432 + 1662 5422 15065 34 0 1 57 0 1 69 7 11 416 1 0 61 5 4 62 0 7 114 0 1 342 3 0 129 10 8 28 8 1 28 9 6 157 1 0 91 3 4 86 0 1 303 0 1 41 9 6 230 4 5 53 0 1 4 1 0 204 7 5 144 8 2 246 3 0 177 5 6 290 76 0 15 9 0 24 1 0 6 1 0 14 5 1 9 2 0 52 19 17 36 9 12 11 1 0 4 2 0 11 8 0 13 2 0 8 2 1 13 2 0 20 5 4 22 11 9 21 chain 6255 chrX 155270560 + 110302781 110303041 L1MB7 1623 - 1346 1607 183127 58 169 170 33 chain 33508 chrX 155270560 + 110307632 110308161 L1PA16 3655 - 36 539 78398 16 34 11 15 3 0 62 6 7 33 7 8 176 2 0 20 8 9 58 1 0 88 chain 3731 chrX 155270560 + 110324740 110324792 Tigger1 2417 + 1713 1764 211456 37 2 1 13 chain 4407 chrX 155270560 + 110331988 110332130 LTR65 659 - 498 642 201849 25 39 37 12 10 12 26 8 10 22 chain 49500 chrX 155270560 + 110356860 110357433 L1PA5 6144 - 12 577 59384 139 7 0 229 1 0 197 chain 125939 chrX 155270560 + 110392064 110393634 THE1A-int 1579 - 5 1579 29122 4 0 1 390 2 3 935 0 1 11 1 0 123 8 7 13 1 4 82 chain 28646 chrX 155270560 + 110393634 110393987 THE1A 353 - 0 352 90530 243 1 0 109 chain 128742 chrX 155270560 + 110403695 110405114 L1PA4 6152 - 0 1421 28379 345 0 1 940 0 1 134 chain 23051 chrX 155270560 + 110410845 110411107 L1PA7 6471 + 6203 6465 115389 262 chain 7956 chrX 155270560 + 110418469 110418615 MER33 330 + 28 175 171301 43 31 32 72 chain 121184 chrX 155270560 + 110427630 110429073 L1PA7 6471 - 1 1479 30640 333 0 1 386 2 1 17 0 4 104 0 2 16 1 0 257 1 0 151 0 31 175 chain 81536 chrX 155270560 + 110429074 110430037 L1PA7 6471 + 4010 4985 42963 198 0 3 458 0 8 277 0 1 30 chain 165640 chrX 155270560 + 110485522 110487575 L1PA8 5853 - 6 2064 22562 31 0 11 45 1 0 19 2 1 40 0 6 6 8 1 8 1 0 68 2 0 49 1 0 548 6 9 663 3 2 310 1 0 241 chain 10613 chrX 155270560 + 110520752 110520873 L1PA3long 6157 + 6034 6155 157762 121 chain 6425 chrX 155270560 + 110529576 110529657 L1MB2 1706 - 724 805 181825 81 chain 18381 chrX 155270560 + 110529996 110530230 L1PA7 6471 - 12 245 131839 134 0 1 11 2 0 87 chain 6426 chrX 155270560 + 110535412 110535490 L1MB2 1706 - 15 93 181818 78 chain 26804 chrX 155270560 + 110558114 110558403 L1HS 6032 - 927 1216 96964 289 chain 84574 chrX 155270560 + 110558418 110559320 L1HS 6032 + 5130 6032 41688 902 chain 57573 chrX 155270560 + 110559348 110560555 L1PREC2 3366 + 2085 2951 54198 104 321 0 99 7 11 29 5 4 415 0 6 6 19 10 37 1 0 43 1 0 5 3 0 13 29 21 16 7 2 15 0 7 6 8 0 3 1 0 14 chain 414530 chrX 155270560 + 110583362 110588940 L1PA8A 6298 + 422 5649 9682 10 1 0 4 1 0 48 7 8 21 1 0 370 5 4 118 1 2 133 1 0 126 0 3 5 0 9 5 0 3 71 1 0 1006 0 1 132 9 0 69 1 0 59 47 17 701 25 21 22 1 0 8 7 5 20 0 4 6 5 1 8 0 1 37 0 1 219 12 0 242 304 0 21 1 0 37 0 1 108 0 1 479 3 1 235 3 2 57 0 1 225 1 0 366 1 0 13 2 1 42 0 2 115 chain 45161 chrX 155270560 + 110588940 110589499 L1PA8A 6298 - 425 991 62692 322 0 1 18 0 2 32 6 9 31 0 1 150 chain 31857 chrX 155270560 + 110612163 110612552 MLT2A1 477 - 92 477 81087 57 3 2 156 4 1 169 chain 5133 chrX 155270560 + 110620099 110620156 MER53 195 + 0 57 193750 57 chain 5838 chrX 155270560 + 110664770 110664835 U6 107 - 41 106 186780 65 chain 3681 chrX 155270560 + 110670757 110670801 MER72 723 + 679 723 212211 44 chain 28111 chrX 155270560 + 110673578 110673955 THE1C 375 + 2 375 92603 12 2 0 95 10 8 147 0 1 85 1 0 25 chain 41539 chrX 155270560 + 110675359 110675816 L1PA3long 6157 - 0 457 67236 457 chain 68577 chrX 155270560 + 110707613 110708382 L1PA4 6152 + 5384 6152 48997 759 1 0 9 chain 27556 chrX 155270560 + 110715610 110716023 MSTB 430 - 0 422 94482 177 58 66 165 0 1 13 chain 35837 chrX 155270560 + 110720634 110721097 L1PA8 5853 + 5394 5853 75082 127 0 2 41 1 0 44 2 0 69 15 14 49 2 1 19 1 0 93 chain 13770 chrX 155270560 + 110721171 110721362 THE1B 368 - 178 368 145364 9 0 1 11 1 0 55 7 6 108 chain 27163 chrX 155270560 + 110743826 110744111 AluYa5 310 - 25 310 95714 285 chain 35337 chrX 155270560 + 110775477 110776270 L1MA4 2864 - 55 2831 75756 40 9 7 18 105 69 154 0 1 21 3 2 34 4 3 126 21 18 28 106 2132 97 1 0 26 chain 20418 chrX 155270560 + 110785809 110786080 MER4E 760 - 7 286 125842 13 0 2 189 8 14 61 chain 27459 chrX 155270560 + 110786352 110786704 MER51B 395 - 11 395 94785 131 0 1 65 1 0 64 4 36 87 chain 40170 chrX 155270560 + 110787034 110787486 LTR7 482 + 0 482 69077 220 1 0 10 0 31 221 chain 297789 chrX 155270560 + 110787488 110791190 HERVH-int 3825 + 0 3825 13537 212 0 11 309 5 0 32 18 16 9 4 0 14 7 1 15 0 17 21 24 0 39 23 1 28 68 5 39 5 6 4 1 0 444 15 0 462 4 31 359 1 0 1045 8 218 101 3 0 6 1 4 376 chain 2292 chrX 155270560 + 110788248 110788273 HERVH-int 3825 + 605 630 224482 25 chain 39349 chrX 155270560 + 110792449 110792901 LTR7 482 + 0 482 70254 220 1 0 27 0 31 204 chain 3659 chrX 155270560 + 110796739 110796784 MER110A 451 + 250 295 212593 45 chain 60449 chrX 155270560 + 110796845 110797525 L1PA7 6471 + 5780 6461 52609 356 0 1 324 chain 21071 chrX 155270560 + 110799161 110799413 PABL_A 660 - 405 660 123657 170 2 0 10 0 5 70 chain 129997 chrX 155270560 + 110799780 110801899 PABL_A-int 1935 - 21 1830 28089 16 42 28 21 2 0 11 8 7 103 1 0 18 3 4 384 0 1 6 0 4 72 0 5 246 1 0 97 5 6 135 0 1 72 1 0 94 0 5 48 311 3 115 1 3 70 1 0 8 1 2 29 1 0 47 0 1 113 8 6 28 chain 48054 chrX 155270560 + 110804323 110804907 PABL_A 660 - 0 660 60442 257 1 0 79 0 8 48 0 45 133 0 9 46 1 16 19 chain 47965 chrX 155270560 + 110807814 110808519 L1MA2 4263 - 205 902 60512 93 15 13 152 14 11 127 2 1 36 6 9 31 18 13 211 chain 11440 chrX 155270560 + 110815604 110815761 LTR49-int 1717 + 163 318 154535 16 1 0 60 1 0 79 chain 280154 chrX 155270560 + 110815785 110818875 L1PA3long 6157 - 0 3095 14635 1799 0 4 296 0 1 995 chain 12062 chrX 155270560 + 110818875 110819004 L1PA3long 6157 + 2948 3077 151213 129 chain 12501 chrX 155270560 + 110825632 110825786 L1PA5 6144 - 0 155 150233 11 1 2 142 chain 21924 chrX 155270560 + 110828100 110828375 AluSp 311 + 9 293 120527 38 1 10 236 chain 557167 chrX 155270560 + 110831938 110837955 L1PA2 6032 - 13 6032 595 984 0 2 5033 chain 28973 chrX 155270560 + 110837980 110838302 L1PA4 6152 - 9 331 89121 322 chain 37711 chrX 155270560 + 110838302 110838716 L1PA4 6152 + 5385 5799 72541 414 chain 61158 chrX 155270560 + 110857589 110858258 L1PA4 6152 - 10 679 52272 669 chain 27268 chrX 155270560 + 110858258 110858587 L1PA4 6152 + 5158 5491 95375 114 6 10 209 chain 122893 chrX 155270560 + 110881448 110882809 L1P1 4361 - 451 1812 30052 1361 chain 140261 chrX 155270560 + 110882809 110884322 L1PA2 6032 + 4519 6032 26107 1513 chain 27528 chrX 155270560 + 110898433 110898829 MLT2A1 477 - 78 477 94582 14 2 0 60 10 9 126 2 1 16 8 12 19 1 2 66 0 2 72 chain 32570 chrX 155270560 + 110908840 110909242 MLT2A1 477 + 0 403 79907 142 0 1 24 3 7 46 4 0 183 chain 25910 chrX 155270560 + 110914600 110914907 AluSp 311 - 4 311 100370 307 chain 51907 chrX 155270560 + 110922383 110923345 PABL_A 660 - 6 660 57680 303 312 0 261 6 5 13 0 1 11 0 4 56 chain 21818 chrX 155270560 + 110930185 110930462 AluSp 311 - 12 301 120954 111 0 13 32 8 7 126 chain 23459 chrX 155270560 + 110969186 110969455 AluYk4 311 - 27 294 113326 152 2 0 115 chain 55933 chrX 155270560 + 110976386 110977423 L1PB1 5432 - 10 988 55164 18 2 1 9 4 2 15 8 7 23 3 1 10 1 0 4 11 8 27 13 1 16 1 0 26 0 2 15 1 0 18 1 0 40 30 24 11 6 5 4 1 0 21 3 0 6 4 5 19 9 5 78 1 0 4 3 4 108 16 0 72 0 1 4 4 5 175 1 2 17 6 10 29 15 7 36 4 0 15 9 8 60 chain 2611 chrX 155270560 + 110991750 110991795 L1ME2z 1083 - 668 716 231554 25 5 8 15 chain 257146 chrX 155270560 + 110996464 110999646 L1PA7 6471 + 3243 6467 15870 227 0 6 29 0 2 19 2 0 91 0 21 271 0 1 576 12 8 117 16 8 55 0 12 132 1 5 300 10 1 321 6 1 61 0 3 92 0 4 11 1 4 78 8 16 272 1 4 191 0 3 264 0 3 10 3 0 5 chain 36968 chrX 155270560 + 111004189 111004817 MER39B 650 - 0 642 73557 21 6 9 16 14 13 13 33 38 56 1 0 32 0 1 33 0 3 10 1 0 5 1 0 18 9 16 63 1 0 14 0 4 27 0 1 32 18 0 41 5 4 120 0 14 38 chain 62542 chrX 155270560 + 111009782 111010487 L1PA5 6144 - 0 717 51658 148 1 2 486 0 11 70 chain 3537 chrX 155270560 + 111021332 111021373 L1PA7 6471 + 6267 6308 214754 41 chain 13589 chrX 155270560 + 111021380 111021530 L1PA7 6471 + 6316 6466 146015 150 chain 517934 chrX 155270560 + 111027680 111033789 L1PA6 6164 + 0 6157 5385 227 13 15 190 0 3 82 0 2 177 0 28 1421 0 1 414 0 1 21 0 4 14 13 18 567 6 0 5 0 2 5 2 1 2116 1 5 15 0 1 20 0 2 800 chain 49892 chrX 155270560 + 111035064 111035693 L1PA8 5853 + 5222 5847 59091 44 1 2 296 1 0 41 5 3 71 1 0 8 1 2 51 2 1 19 1 0 87 chain 7390 chrX 155270560 + 111040761 111040882 Charlie4a 502 + 255 371 174835 6 0 1 80 3 1 6 2 0 15 2 0 7 chain 223265 chrX 155270560 + 111046098 111048724 L1PA6 6164 - 2 2645 17699 404 0 19 30 9 0 225 0 6 835 1 0 384 0 3 353 4 3 381 chain 29138 chrX 155270560 + 111071809 111072249 THE1D-int 1627 + 12 495 88377 101 0 1 15 54 0 84 0 16 57 1 0 103 3 84 22 chain 25587 chrX 155270560 + 111083124 111083426 AluY 311 + 8 311 101791 124 0 1 178 chain 37353 chrX 155270560 + 111101623 111102175 LTR19B 566 - 0 566 73026 22 0 2 6 57 69 13 8 7 45 0 1 233 6 7 46 2 1 114 chain 41065 chrX 155270560 + 111115918 111116566 L1PA16 3655 + 2926 3578 67818 59 3 0 113 31 33 73 6 5 71 31 29 93 0 3 8 10 13 34 4 6 112 chain 28311 chrX 155270560 + 111162333 111162750 LTR12F 595 + 0 580 91903 100 0 12 34 15 103 38 7 71 91 4 3 128 chain 12665 chrX 155270560 + 111162932 111163104 MER30 238 - 6 191 149589 42 3 0 61 6 22 60 chain 8145 chrX 155270560 + 111173572 111173667 L1PA7 6471 + 6366 6461 170258 95 chain 226578 chrX 155270560 + 111179574 111182040 L1PA3long 6157 - 0 2466 17508 625 0 1 641 1 0 1199 chain 87640 chrX 155270560 + 111192303 111193859 L1PB1 5432 + 4204 5404 40518 341 2 1 57 3 0 13 11 8 188 1 0 291 3 2 11 13 0 22 1 0 7 322 14 10 3 1 50 2 1 15 1 0 44 1 0 16 2 0 5 18 7 19 8 5 14 2 0 26 1 0 19 1 0 13 chain 4290 chrX 155270560 + 111200730 111200798 MIR 256 - 124 193 203349 39 6 7 23 chain 28789 chrX 155270560 + 111205678 111206066 Tigger1 2417 + 1697 2088 89947 13 7 8 59 0 3 90 1 0 218 chain 539091 chrX 155270560 + 111206066 111212212 L1PA4 6152 + 0 6151 2971 130 14 0 12 12 26 135 0 1 276 1 0 1795 0 1 706 5 1 1009 0 1 536 1 0 23 3 4 52 9 16 581 2 1 837 0 1 7 chain 13943 chrX 155270560 + 111218665 111218825 L1PA6 6164 - 9 168 144778 5 1 0 154 chain 6347 chrX 155270560 + 111231187 111231258 MLT2B4 540 - 468 539 182410 71 chain 442966 chrX 155270560 + 111236139 111241379 L1PA6 6164 - 7 5165 8956 1964 61 0 499 0 1 174 1 0 148 13 1 191 5 0 588 5 7 183 0 4 66 28 6 43 0 1 67 0 2 486 0 10 115 1 0 602 chain 16766 chrX 155270560 + 111242167 111242416 L1PA8 5853 - 0 245 136207 93 2 1 18 2 1 40 24 22 70 chain 6930 chrX 155270560 + 111250069 111250183 MER45A 178 - 0 110 177959 60 20 16 34 chain 22296 chrX 155270560 + 111252983 111253231 L1PA5 6144 + 5893 6141 118928 248 chain 57369 chrX 155270560 + 111271505 111272171 L1PA6 6164 - 3 665 54303 7 4 0 655 chain 19360 chrX 155270560 + 111272527 111272927 L1MA2 4263 - 158 546 129044 36 2 1 10 7 0 93 97 96 59 17 14 79 chain 36218 chrX 155270560 + 111276197 111276604 L1PA5 6144 + 5733 6141 74603 77 0 1 330 chain 5581 chrX 155270560 + 111317552 111317612 L1PA5 6144 + 5833 5893 189264 60 chain 5698 chrX 155270560 + 111331155 111331228 L1MB5 1630 - 29 101 188130 52 1 0 20 chain 71567 chrX 155270560 + 111341201 111341995 L1PA4 6152 - 13 807 47671 794 chain 40793 chrX 155270560 + 111341995 111342450 L1PA4 6152 + 4873 5328 67496 455 chain 20317 chrX 155270560 + 111345876 111346307 L1PA11 4918 + 4231 4629 126186 80 1 5 9 1 0 64 8 7 11 2 0 68 3 1 12 1 0 14 52 39 13 1 0 13 2 0 11 31 21 7 2 0 4 2 0 19 chain 6691 chrX 155270560 + 111352743 111352913 LTR12 884 - 495 711 179753 12 2 0 16 18 0 31 7 85 40 11 0 17 5 4 11 chain 401325 chrX 155270560 + 111354643 111359476 HERV9-int 5642 - 818 5642 10044 11 0 1 772 0 4 1247 0 1 1188 18 19 472 9 8 72 11 14 58 1 0 111 3 1 129 6 0 107 24 13 254 1 2 140 1 2 198 chain 13862 chrX 155270560 + 111365319 111365754 L1MA2 4263 + 3918 4218 145025 40 1 0 4 1 0 96 7 0 16 1 2 29 1 0 9 198 74 16 4 2 12 chain 29557 chrX 155270560 + 111366637 111366986 L1PA8A 6298 - 1051 1402 85739 208 0 1 134 0 1 7 chain 76884 chrX 155270560 + 111366986 111368005 L1PA8A 6298 + 5251 6280 45038 105 0 1 138 6 9 47 0 15 13 0 1 69 4 0 14 0 1 295 2 1 76 3 0 132 0 1 5 3 0 10 9 7 13 0 1 75 chain 3312 chrX 155270560 + 111387795 111387944 MER5B 177 - 7 156 218741 31 97 97 21 chain 38454 chrX 155270560 + 111411613 111412689 MER41B 635 + 2 611 71512 89 6 5 26 4 44 274 32 31 79 521 16 45 chain 105673 chrX 155270560 + 111413450 111414910 L1PA10 4194 - 62 1524 35334 16 18 15 10 10 9 18 0 2 55 9 17 217 7 8 57 0 3 318 1 2 211 2 0 43 7 0 122 0 2 115 7 5 217 chain 141407 chrX 155270560 + 111417313 111418864 L1PA3long 6157 - 2 1556 25919 847 0 3 704 chain 61696 chrX 155270560 + 111418864 111419549 L1PA3long 6157 + 3901 4592 51873 186 0 1 324 0 5 175 chain 230224 chrX 155270560 + 111424110 111426926 L1P3 4156 + 0 2839 17296 251 1 0 64 10 9 289 1 0 4 0 1 87 5 0 6 7 12 927 4 23 76 2 1 143 0 3 203 0 2 453 7 9 276 chain 10222 chrX 155270560 + 111426935 111427047 L1PA7 6471 + 6353 6465 159503 112 chain 28715 chrX 155270560 + 111427264 111427587 L1PA5 6144 + 5818 6141 90274 323 chain 25480 chrX 155270560 + 111442239 111442536 AluY 311 + 5 302 102312 297 chain 102929 chrX 155270560 + 111452148 111453339 HERVL-int 5654 - 1418 2609 36013 161 0 2 639 6 4 385 chain 5361 chrX 155270560 + 111457929 111458001 L1MA10 1535 - 816 889 191425 18 2 3 52 chain 47734 chrX 155270560 + 111463583 111464226 THE1C-int 1605 - 851 1577 60667 45 0 1 250 31 59 235 0 54 82 chain 84354 chrX 155270560 + 111472911 111473884 L1P1 4361 - 3373 4360 41768 827 11 25 135 chain 20994 chrX 155270560 + 111473889 111474119 L1PA4 6152 + 5074 5304 123938 230 chain 52924 chrX 155270560 + 111474119 111474701 L1PA4 6152 + 5308 5892 57070 383 0 2 199 chain 23672 chrX 155270560 + 111474701 111474960 L1PA4 6152 + 5893 6152 112190 259 chain 512423 chrX 155270560 + 111483912 111490081 L1PA6 6164 - 6 6164 5932 140 7 14 286 1 2 29 40 15 274 1 0 83 1 0 1111 0 1 207 0 5 294 5 0 512 0 1 171 0 1 492 0 2 136 0 1 940 18 18 249 0 1 423 0 1 214 0 1 24 2 1 509 chain 4789 chrX 155270560 + 111502712 111502795 MADE1 96 - 0 96 197476 9 4 0 15 1 2 16 1 17 37 chain 178287 chrX 155270560 + 111504393 111506442 L1PA5 6144 + 4105 6144 21138 1783 1 2 10 19 9 79 1 0 156 chain 10692 chrX 155270560 + 111514972 111515160 L1MA3 4352 - 0 174 157441 21 3 0 3 1 0 15 1 0 25 1 0 4 9 8 16 2 0 25 4 0 52 1 0 5 chain 20151 chrX 155270560 + 111540499 111540880 MSTA 426 - 21 426 126668 89 0 20 40 35 30 7 0 7 6 4 0 47 57 63 96 chain 30035 chrX 155270560 + 111546668 111546995 L1PA3long 6157 + 5830 6157 84697 327 chain 540464 chrX 155270560 + 111569374 111575388 L1PA3long 6157 + 4 6149 2741 79 0 1 64 4 5 158 1 0 66 2 1 398 0 128 1422 1 0 2028 0 4 1791 chain 56779 chrX 155270560 + 111575393 111576053 L1PA4 6152 + 5474 6136 54666 282 1 2 280 0 1 97 chain 260746 chrX 155270560 + 111592634 111595513 L1PA4 6152 - 1544 4421 15654 1159 2 0 1718 chain 135590 chrX 155270560 + 111595513 111597071 L1PA4 6152 + 4594 6151 26847 707 1 0 850 chain 4159 chrX 155270560 + 111618174 111618228 MER53 195 - 0 53 205113 35 1 0 18 chain 4130 chrX 155270560 + 111652595 111652639 L1MA3 4352 + 44 88 205493 44 chain 271006 chrX 155270560 + 111674960 111677909 L1PA3long 6157 - 0 2950 15140 2864 0 1 85 chain 14379 chrX 155270560 + 111697352 111697551 MER30 238 - 0 213 143267 39 3 0 69 7 24 81 chain 12254 chrX 155270560 + 111702578 111702743 L1PA4 6152 + 5986 6141 151186 38 18 8 109 chain 459286 chrX 155270560 + 111705041 111711200 L1PA7 6471 + 5 6470 8432 196 11 10 29 62 63 18 140 337 46 4 5 12 5 15 57 1 76 156 23 44 84 5 7 169 34 17 309 2 0 5 4 6 20 0 3 5 3 0 7 1 0 214 0 1 246 0 1 476 5 6 18 0 1 484 0 2 582 0 1 102 5 6 168 2 0 89 0 1 268 1 2 279 0 1 22 0 4 310 1 0 334 1 3 298 8 7 55 16 17 63 1 0 260 9 14 271 0 1 110 0 9 8 9 0 31 1 0 4 chain 70777 chrX 155270560 + 111730582 111731632 L1PB 1623 - 177 1190 48023 74 4 5 43 8 0 14 25 1 87 0 14 29 3 1 76 6 5 75 4 0 182 1 2 247 14 1 102 2 1 54 chain 18051 chrX 155270560 + 111733464 111733724 L1PB 1623 + 117 370 132729 52 4 1 18 7 4 77 5 4 97 chain 7998 chrX 155270560 + 111743403 111743502 MER41B 635 - 55 154 171079 99 chain 539892 chrX 155270560 + 111745271 111751289 L1PA3long 6157 + 4 6156 2828 148 0 1 54 0 1 6 2 1 565 1 129 43 0 4 490 1 0 1079 0 1 2540 0 1 1089 chain 6998 chrX 155270560 + 111772614 111772818 MER53 195 + 2 189 177470 30 79 81 13 19 0 63 chain 39934 chrX 155270560 + 111773607 111774059 LTR7 482 + 0 482 69418 143 1 0 114 0 31 194 chain 298781 chrX 155270560 + 111774082 111777879 HERVH-int 3825 + 0 3825 13491 212 0 11 46 1 0 217 125 0 48 5 0 36 2 1 9 1 0 9 4 0 14 7 1 15 1 0 12 87 0 67 0 20 11 2 1 49 1 0 231 1 0 213 15 0 462 4 31 290 0 4 326 1 3 115 1 0 666 7 217 250 0 4 234 chain 3730 chrX 155270560 + 111774617 111774670 HERVH-int 3825 + 540 592 211471 30 1 0 10 1 0 7 0 1 4 chain 5076 chrX 155270560 + 111774849 111774924 HERVH-int 3825 + 631 725 194345 26 1 0 11 0 21 8 1 0 28 chain 40408 chrX 155270560 + 111779133 111779585 LTR7 482 + 0 482 68723 228 1 0 36 0 31 187 chain 498628 chrX 155270560 + 111789040 111795122 L1PA6 6164 - 3 6164 6919 329 0 1 1188 6 5 48 0 1 625 17 20 151 0 1 169 0 3 368 5 147 38 0 1 725 41 10 854 0 1 515 43 0 27 0 2 365 1 0 306 9 4 6 0 5 246 chain 274570 chrX 155270560 + 111799411 111803316 L1PA10 4194 + 255 4141 14947 15 6 4 12 1 0 8 125 90 11 8 4 4 1 0 41 48 46 370 0 8 12 1 0 238 4 5 290 12 9 201 0 6 527 1 0 264 7 8 30 0 1 13 1 2 4 1 0 141 5 7 22 5 2 64 0 2 63 0 4 330 26 32 190 33 36 272 0 4 73 0 3 317 11 12 30 3 0 30 9 4 25 chain 117568 chrX 155270560 + 111817225 111818776 THE1A-int 1579 + 0 1574 31939 169 2 1 5 0 1 228 7 8 182 11 13 64 18 17 196 0 2 652 0 20 4 1 0 12 chain 246454 chrX 155270560 + 111830113 111833337 L1PBa1 4058 + 105 3416 16423 39 0 1 26 0 1 85 1 0 64 0 1 19 1 0 83 13 14 12 0 1 4 1 0 111 1 0 52 8 7 30 16 41 413 4 0 468 0 1 18 4 0 62 1 0 4 1 0 80 0 4 176 0 4 97 1 45 210 0 2 120 0 2 35 2 3 39 4 15 204 0 2 516 0 1 199 chain 549002 chrX 155270560 + 111833353 111839499 L1PA3long 6157 + 0 6150 1577 126 0 14 14 26 12 1083 1 0 3770 0 1 284 0 4 842 chain 233107 chrX 155270560 + 111839569 111842681 L1PB1 5432 + 2356 5420 17137 22 5 1 121 3 0 10 0 1 743 5 6 389 13 0 74 13 9 883 6 7 472 9 14 30 1 0 8 1 0 12 4 0 11 2 0 50 1 0 18 1 0 43 1 0 16 4 0 7 16 7 13 28 23 24 1 0 21 1 0 13 1 0 16 chain 9837 chrX 155270560 + 111843325 111843484 MLT2B1 522 + 0 140 161409 59 1 2 54 20 0 25 chain 308742 chrX 155270560 + 111848129 111851613 L1PA4 6152 + 2559 6151 13057 424 0 1 185 3 4 80 0 103 485 0 1 250 0 1 670 0 1 1387 chain 121182 chrX 155270560 + 111859387 111860927 THE1C-int 1605 + 0 1597 30643 110 0 54 280 0 8 299 18 10 469 0 1 169 1 0 4 0 1 150 0 2 40 chain 6032 chrX 155270560 + 111868278 111868354 MER5A1 166 - 1 79 184964 19 0 2 57 chain 97626 chrX 155270560 + 111890436 111891564 L1PA7 6471 + 5343 6468 37390 279 0 2 180 5 4 650 4 0 10 chain 10980 chrX 155270560 + 111892324 111892444 L1PA4 6152 - 9 129 156272 120 chain 4004 chrX 155270560 + 111893927 111894133 MER3 215 - 2 188 207320 26 41 29 6 0 1 8 11 0 12 6 0 17 63 71 16 chain 3672 chrX 155270560 + 111899866 111899910 L1MB7 1623 + 3 47 212338 44 chain 8297 chrX 155270560 + 111904884 111904993 HY1 111 + 0 110 169414 82 1 2 26 chain 43077 chrX 155270560 + 111917226 111917743 L1PB1 5432 + 4017 4540 65323 137 0 2 8 0 4 372 chain 37266 chrX 155270560 + 111917744 111918192 L1PB1 5432 + 4543 4993 73146 86 0 1 48 0 1 314 chain 5138 chrX 155270560 + 111918199 111918275 L1PB1 5432 + 5158 5232 193686 9 2 0 65 chain 3802 chrX 155270560 + 111918281 111918321 L1PB1 5432 + 5237 5277 210367 40 chain 6545 chrX 155270560 + 111918353 111918480 L1PB1 5432 + 5296 5418 180884 8 1 4 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 186123 chrX 155270560 + 111927495 111929609 L1PA5 6144 - 1 2116 20405 457 1 0 388 5 6 38 0 1 1225 chain 127356 chrX 155270560 + 111942706 111944183 L1P2 5180 + 2009 3495 28728 28 0 1 956 0 1 236 7 11 201 0 3 49 chain 3393 chrX 155270560 + 111944183 111944219 L1P2 5180 + 3454 3490 217219 36 chain 2970 chrX 155270560 + 111949890 111949941 MER33 330 - 146 197 225669 26 8 8 17 chain 550222 chrX 155270560 + 111961842 111967855 L1PA2 6032 + 5 6019 1416 69 0 1 182 1 0 1940 0 1 3821 chain 17993 chrX 155270560 + 111971481 111971827 MSTD 398 - 0 376 132877 17 1 0 39 17 23 22 15 16 38 48 52 29 2 22 118 chain 87575 chrX 155270560 + 111992668 111993637 L1PA5 6144 - 21 991 40541 317 0 1 652 chain 42566 chrX 155270560 + 111993637 111994111 L1PA5 6144 + 4681 5155 65833 474 chain 3930 chrX 155270560 + 112050452 112050513 L1MCa 1829 + 430 490 208415 13 9 8 39 chain 101433 chrX 155270560 + 112097362 112098647 LTR12C 1709 - 0 1709 36412 73 1 0 9 1 0 86 0 102 211 0 4 99 10 8 5 1 0 124 0 278 133 8 9 187 0 43 42 4 5 291 chain 14329 chrX 155270560 + 112110205 112110424 L1PA8 5853 + 5637 5853 143462 39 1 0 11 6 2 48 5 4 19 1 0 73 1 2 6 0 3 9 chain 268670 chrX 155270560 + 112157617 112160673 L1PA6 6164 - 3 3063 15253 143 5 6 704 1 0 1032 0 3 294 0 1 788 0 1 4 1 0 84 chain 295467 chrX 155270560 + 112166138 112169461 L1PA5 6144 - 12 3343 13674 1579 0 4 99 0 3 1289 0 1 356 chain 172099 chrX 155270560 + 112169854 112172574 L1PB1 5432 + 3120 5419 21802 135 0 1 246 1 2 216 36 15 189 2 1 201 0 1 501 3 0 75 1 3 384 84 24 24 1 0 9 17 12 10 3 1 50 18 16 41 313 3 16 14 1 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 13960 chrX 155270560 + 112181048 112181247 L1PA8 5853 + 5658 5853 144705 20 2 1 10 2 1 49 3 2 19 1 0 93 chain 60358 chrX 155270560 + 112181248 112182243 L1MA1 4479 + 3263 4162 52652 126 3 0 42 1 0 87 1 0 57 1 0 4 87 14 122 3 2 22 2 0 16 9 8 63 1 0 15 10 8 10 1 0 88 1 0 5 3 0 126 1 0 29 2 0 33 2 1 10 1 0 11 chain 8053 chrX 155270560 + 112222558 112222687 L1MB1 2102 - 94 221 170733 66 15 12 7 0 1 41 chain 3768 chrX 155270560 + 112244243 112244309 U13_ 108 - 0 60 210829 23 13 7 30 chain 3016 chrX 155270560 + 112256144 112256177 tRNA-Gln-CAG 43 - 5 38 224718 33 chain 17308 chrX 155270560 + 112267741 112268097 L1PB1 5432 + 5105 5427 134766 9 1 0 24 1 0 9 1 0 10 6 2 10 7 5 46 2 1 15 1 0 44 1 0 16 25 12 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 16 1 0 7 chain 30965 chrX 155270560 + 112270438 112271202 L1MA2 4263 - 207 643 82568 47 0 4 40 2 1 6 1 0 83 331 4 7 0 1 57 3 0 144 1 0 42 chain 10989 chrX 155270560 + 112288775 112288989 L1MA3 4352 - 4106 4313 156236 59 22 21 10 1 0 42 1 8 8 13 0 15 5 6 38 chain 72171 chrX 155270560 + 112323015 112323939 L1PB 1623 + 524 1453 47394 88 9 14 84 0 8 4 8 0 456 3 1 132 0 3 132 1 0 7 chain 27381 chrX 155270560 + 112324161 112324517 THE1B 368 - 0 368 95023 158 12 10 26 1 0 115 0 15 44 chain 21104 chrX 155270560 + 112324522 112324781 THE1B-int 1605 - 5 265 123544 169 0 1 90 chain 16037 chrX 155270560 + 112324945 112325296 L1PB1 5432 - 8 329 138258 4 1 0 16 1 0 13 1 0 21 1 0 21 30 25 16 25 12 16 1 0 43 1 0 16 2 1 13 0 1 22 0 3 14 2 0 8 5 1 12 1 0 12 1 0 20 1 0 11 chain 26594 chrX 155270560 + 112328410 112329019 L1PREC2 3366 - 303 873 97686 4 1 0 11 2 0 31 38 36 10 22 8 13 3 0 24 8 6 14 11 7 11 97 91 44 2 0 41 3 0 219 chain 380762 chrX 155270560 + 112331892 112336883 L1PB1 5432 + 56 5082 10729 17 31 33 46 0 11 310 18 4 139 1 3 186 1 10 548 7 13 19 1 0 15 21 8 126 0 4 133 0 1 26 10 9 338 0 12 74 0 1 358 9 7 468 0 8 426 0 1 201 0 2 108 1 0 241 0 1 172 0 7 243 1 0 78 1 2 163 0 1 376 1 0 77 chain 34361 chrX 155270560 + 112351945 112352380 LTR7 482 - 0 482 77115 79 4 0 79 7 17 39 1 32 15 0 10 211 chain 276771 chrX 155270560 + 112353640 112357193 HERVH-int 3825 - 0 3809 14830 225 0 2 32 1 0 228 8 218 39 9 11 319 2 1 648 11 16 264 0 27 15 0 1 201 6 0 108 1 0 37 11 1 159 0 1 46 0 7 337 0 1 98 9 8 76 2 1 42 1 0 7 28 104 42 59 0 18 10 12 83 0 1 9 15 16 31 1 0 51 0 2 264 chain 2162 chrX 155270560 + 112356652 112356677 HERVH-int 3825 - 3056 3081 217640 25 chain 33835 chrX 155270560 + 112357211 112357652 LTR7 482 - 0 482 77879 158 7 17 12 28 59 236 chain 5147 chrX 155270560 + 112358461 112358527 MSTD 398 - 2 68 193573 66 chain 32831 chrX 155270560 + 112363983 112364363 L1PA7 6471 + 6085 6464 79490 5 0 1 16 2 0 357 chain 10267 chrX 155270560 + 112383287 112383409 Tigger3a 397 + 154 276 159298 122 chain 176964 chrX 155270560 + 112384953 112386913 L1PA4 6152 - 15 1984 21255 753 1 0 755 1 0 75 0 11 375 chain 20701 chrX 155270560 + 112419365 112419825 LTR7Y 441 - 8 441 124964 88 0 2 62 0 9 31 134 118 20 10 0 18 28 16 69 chain 163015 chrX 155270560 + 112421714 112423612 HERVH-int 3825 - 0 2109 22937 495 0 210 331 0 1 490 0 1 13 2 0 504 0 1 63 chain 8504 chrX 155270560 + 112423649 112423785 LTR7B 505 - 381 505 168269 39 28 16 69 chain 77688 chrX 155270560 + 112429001 112430190 L1PA14 3548 - 120 1289 44662 13 1 0 17 1 0 5 1 0 15 4 2 33 16 11 87 25 24 84 1 0 6 2 0 21 4 0 62 0 7 36 2 0 5 2 0 47 8 6 11 2 0 22 2 0 226 8 7 147 1 0 43 0 2 35 1 2 193 chain 277004 chrX 155270560 + 112441821 112445731 L1PA10 4194 - 33 3941 14816 11 1 0 34 4 1 246 3 5 216 0 2 516 2 0 245 0 1 200 5 9 25 55 48 64 0 11 155 0 1 60 11 12 69 0 4 366 4 5 34 2 1 6 0 4 162 0 2 174 6 7 11 1 0 224 5 6 68 7 5 53 0 7 201 0 3 1 6 0 363 5 6 33 2 0 10 8 12 59 16 8 11 0 3 6 21 12 7 1 0 20 2 0 5 44 37 8 1 0 14 3 1 18 chain 516387 chrX 155270560 + 112449858 112455894 L1PA6 6164 - 17 6162 5540 1461 1 90 887 0 6 9 1 0 5 2 0 165 0 1 1198 1 0 95 1 0 293 0 18 241 0 1 1211 7 6 260 1 0 4 1 2 192 chain 27411 chrX 155270560 + 112460270 112461496 MLT2A2 560 - 2 560 94933 145 8 19 18 822 138 19 11 13 26 1 0 161 0 4 15 chain 59760 chrX 155270560 + 112475549 112476537 L1PB1 5432 - 9 1454 52955 4 1 0 15 1 0 13 1 0 21 1 0 17 68 52 19 1 0 45 1 0 18 1 0 41 43 36 4 1 0 24 14 503 12 5 0 55 0 2 7 1 3 65 0 1 473 2 1 14 chain 89347 chrX 155270560 + 112480568 112481708 L1PA8 5853 - 0 1135 39863 93 1 0 19 2 1 24 5 0 25 1 0 12 2 1 68 2 0 46 1 0 241 1 8 243 6 5 56 0 2 25 1 0 266 chain 12284 chrX 155270560 + 112494863 112495002 L1PA6 6164 - 4 143 151064 139 chain 14109 chrX 155270560 + 112517366 112517526 L1PBa1 4058 + 70 230 144180 160 chain 5632 chrX 155270560 + 112517881 112517956 L1PB1 5432 + 5348 5420 188744 22 1 0 21 1 0 13 1 0 16 chain 46724 chrX 155270560 + 112527728 112528301 L1PA8 5853 + 5221 5853 61435 343 1 0 22 0 14 8 2 0 55 0 50 27 2 1 19 1 0 93 chain 17446 chrX 155270560 + 112536680 112536867 L1PA3long 6157 + 5962 6149 134391 187 chain 4048 chrX 155270560 + 112536867 112536910 L1PA2 6032 + 5977 6020 206662 43 chain 74452 chrX 155270560 + 112549288 112550334 MER11C 1089 - 26 1089 46300 25 0 1 117 1 0 54 0 1 127 0 1 38 1 0 4 1 5 48 0 1 37 71 70 149 1 0 64 0 4 54 7 16 247 chain 56471 chrX 155270560 + 112550459 112551333 L1MA4 2864 + 1789 2661 54867 42 1 0 4 0 1 31 11 12 129 1 0 12 4 5 93 16 19 41 11 6 49 11 22 49 10 2 28 3 0 33 1 0 134 1 0 18 1 2 140 chain 11142 chrX 155270560 + 112552512 112552658 MER2 342 + 136 289 155659 46 0 7 100 chain 48024 chrX 155270560 + 112553994 112554830 L1PREC2 3366 + 2201 3002 60464 43 1 0 5 1 2 444 0 1 21 1 0 34 3 1 15 42 41 42 1 0 4 2 0 9 33 25 16 7 2 15 10 8 22 44 30 21 chain 39357 chrX 155270560 + 112560927 112561388 L1PA7 6471 + 5998 6461 70239 132 2 1 306 0 3 21 chain 40568 chrX 155270560 + 112568187 112568638 L1PA2 6032 - 0 454 68482 15 1 4 435 chain 50574 chrX 155270560 + 112568638 112569183 L1PA2 6032 + 4977 5522 58599 545 chain 2856 chrX 155270560 + 112576687 112576717 U2 167 - 137 167 227723 30 chain 555356 chrX 155270560 + 112581049 112587080 L1PA2 6032 - 0 6031 784 13 2 0 515 0 1 2361 0 4 2425 7 0 141 0 4 567 chain 175011 chrX 155270560 + 112603656 112605747 L1PA8A 6298 - 7 2113 21460 311 0 1 64 0 1 88 5 14 322 2 1 806 0 5 493 chain 37681 chrX 155270560 + 112605747 112606272 L1P3 4156 + 2968 3492 72573 128 0 1 62 10 9 172 14 12 55 3 4 70 0 1 6 1 0 4 chain 110882 chrX 155270560 + 112615845 112617173 L1PA7 6471 + 5144 6468 33973 5 2 0 194 5 1 159 0 2 115 2 1 79 0 2 437 1 0 159 1 0 10 1 2 158 chain 27162 chrX 155270560 + 112619187 112619545 THE1B 368 - 0 368 95716 31 0 1 43 1 0 92 5 1 28 1 0 108 5 20 44 chain 42763 chrX 155270560 + 112621122 112621669 L1PA8 5853 + 5313 5853 65707 251 1 0 46 2 0 64 19 17 49 2 1 19 1 0 93 chain 36473 chrX 155270560 + 112645207 112645653 LTR7 482 + 0 477 74270 224 8 40 19 1 0 194 chain 23568 chrX 155270560 + 112645982 112646362 THE1D 372 + 1 372 112758 50 9 0 94 50 49 52 0 1 125 chain 43981 chrX 155270560 + 112648718 112649378 L1PB2 3958 + 2949 3592 64227 196 9 1 53 0 1 35 5 0 61 13 11 53 0 3 13 2 0 58 6 4 10 7 3 94 3 4 4 0 1 38 chain 24177 chrX 155270560 + 112665526 112665902 THE1D 372 + 0 372 109335 48 9 0 71 5 11 54 12 9 112 8 11 24 1 0 32 chain 40515 chrX 155270560 + 112674444 112674904 L1PA5 6144 + 5673 6132 68574 316 1 0 143 chain 493189 chrX 155270560 + 112689224 112694722 L1PA3long 6157 + 0 6156 7217 94 0 526 156 0 128 1590 0 1 140 0 1 1260 0 2 2258 chain 97013 chrX 155270560 + 112697302 112698618 L1PB2 3958 - 171 1476 37560 12 1 0 26 2 0 67 2 1 64 1 0 8 1 4 6 3 0 148 2 0 12 2 0 62 8 0 16 1 0 54 7 5 360 0 11 7 1 0 205 0 1 74 2 0 162 chain 6760 chrX 155270560 + 112707431 112707544 L1MA1 4479 - 337 447 179243 29 7 5 30 5 4 42 chain 3126 chrX 155270560 + 112707652 112707709 L1MA1 4479 - 3765 3826 222414 10 0 4 15 3 0 6 1 4 22 chain 44537 chrX 155270560 + 112710880 112711403 L1PA8 5853 - 880 1404 63456 40 0 2 462 1 0 20 chain 71492 chrX 155270560 + 112711403 112712288 L1PA8 5853 + 4970 5853 47700 35 5 4 279 0 1 275 1 0 44 2 0 74 1 0 11 1 0 10 0 1 40 2 1 15 1 0 49 0 4 40 chain 34470 chrX 155270560 + 112716201 112716677 LTR2B 499 - 0 490 76957 60 0 5 145 0 1 155 14 33 31 10 0 55 1 0 5 chain 534648 chrX 155270560 + 112722547 112728674 L1PA5 6144 + 0 6144 3636 234 4 5 1461 4 5 800 0 1 290 1 0 293 0 10 409 0 1 8 0 1 365 0 2 2109 0 1 149 chain 33591 chrX 155270560 + 112728719 112729225 L1MA1 4479 - 3736 4210 78254 42 0 4 253 18 2 77 38 20 67 2 0 9 chain 3840 chrX 155270560 + 112793731 112793778 MADE1 96 - 50 96 209781 30 1 0 16 chain 12979 chrX 155270560 + 112806167 112806336 MER4A1 472 - 10 183 148316 55 12 16 102 chain 79186 chrX 155270560 + 112809644 112810506 L1PA3long 6157 + 5287 6149 43956 862 chain 25569 chrX 155270560 + 112813936 112814271 L1PA10 4194 - 34 367 101881 10 1 0 34 8 5 22 0 2 260 chain 48531 chrX 155270560 + 112819820 112820635 L1PB1 5432 - 49 827 60085 13 1 0 24 2 0 10 55 40 15 1 0 44 19 17 52 2 0 9 5 1 12 1 0 8 1 0 24 3 0 7 1 4 140 0 3 6 11 8 51 0 1 47 0 1 4 1 0 216 9 0 21 chain 3357 chrX 155270560 + 112838329 112838365 L1MC3 1789 - 415 451 217917 36 chain 39592 chrX 155270560 + 112854387 112854831 L1PA5 6144 - 8 452 69899 444 chain 31699 chrX 155270560 + 112866470 112866999 L1MA3 4352 - 259 807 81328 37 60 63 158 5 14 81 0 17 41 10 0 63 7 6 62 0 1 5 chain 8385 chrX 155270560 + 112890423 112890527 MER4A 717 - 558 662 168934 104 chain 10771 chrX 155270560 + 112920075 112920275 L1PB1 5432 - 17 195 157107 11 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 29 15 2 16 7 6 37 chain 262362 chrX 155270560 + 112930412 112933326 L1HS 6032 + 563 3479 15566 874 0 2 2040 chain 505172 chrX 155270560 + 112935233 112941652 L1PA7 6471 - 10 6471 6523 121 0 3 18 1 0 41 7 0 58 0 1 421 0 1 178 1 4 9 0 4 158 1 2 415 0 1 7 0 1 349 0 4 12 0 1 131 0 2 509 5 6 6 1 0 176 21 24 241 4 8 19 3 1 7 0 1 204 0 1 208 1 2 398 13 17 52 2 4 97 4 5 608 5 6 11 1 0 199 0 2 313 4 10 632 1 0 242 14 11 87 18 0 159 7 17 36 35 52 148 chain 103399 chrX 155270560 + 112951626 112952800 L1PA5 6144 + 4246 5427 35897 98 0 4 280 1 0 669 0 4 126 chain 62799 chrX 155270560 + 112952800 112953508 L1PA5 6144 + 5430 6138 51538 708 chain 13777 chrX 155270560 + 112955187 112955342 L1PA4 6152 + 5997 6152 145342 155 chain 24019 chrX 155270560 + 112962257 112962538 AluY 311 + 16 297 110215 281 chain 522681 chrX 155270560 + 112973000 112979756 L1PA7 6471 - 6 6468 4897 155 10 12 166 0 1 120 0 2 5 2 0 147 3 4 45 2 1 38 0 22 12 0 4 52 13 12 38 0 4 275 0 9 473 8 9 121 0 6 169 328 0 42 0 2 683 4 0 283 0 4 785 0 1 84 0 3 39 6 1 762 1 0 1182 11 16 64 1 2 203 21 0 209 14 13 4 0 1 81 1 2 94 chain 33023 chrX 155270560 + 112995235 112995596 L1PA3long 6157 + 5796 6157 79179 361 chain 32026 chrX 155270560 + 113003674 113004105 MLT2A1 477 + 0 477 80827 168 5 2 67 1 0 4 3 5 15 0 8 113 6 46 49 chain 342583 chrX 155270560 + 113004105 113008293 HERVL-int 5654 + 0 5654 11819 56 6 7 637 5 1 424 0 1 39 5 13 232 0 7 986 0 3 546 0 4 151 0 1416 209 0 1 34 4 10 118 0 3 24 0 5 7 1 2 220 12 23 182 0 3 290 chain 34046 chrX 155270560 + 113008293 113008727 MLT2A1 477 + 0 477 77554 168 9 12 205 3 43 49 chain 85064 chrX 155270560 + 113025808 113026797 L1PA6 6164 + 5168 6162 41490 484 14 19 491 chain 118029 chrX 155270560 + 113039194 113040735 THE1A-int 1579 + 1 1572 31796 98 0 1 39 9 5 492 9 12 4 1 0 4 0 1 516 10 41 348 1 0 10 chain 3335 chrX 155270560 + 113054654 113054868 L1ME1 1623 + 182 382 218313 18 0 1 9 157 142 30 chain 6017 chrX 155270560 + 113055261 113055371 MER34B 572 + 99 216 185079 47 15 23 23 8 7 17 chain 32071 chrX 155270560 + 113056777 113057125 L1PA4 6152 - 579 927 80735 348 chain 50175 chrX 155270560 + 113057132 113057698 L1PA4 6152 + 5577 6143 58884 566 chain 520987 chrX 155270560 + 113062490 113069253 L1PA7 6471 - 1 6466 5057 94 12 26 399 1 0 279 0 3 48 2 0 514 2 1 96 0 1 999 1 2 127 0 1 151 7 5 12 323 0 69 4 3 143 1 20 769 7 11 56 28 0 116 0 2 136 21 0 159 1 0 19 0 1 178 0 1 635 0 1 34 0 33 248 0 1 4 1 0 669 0 1 140 42 42 216 chain 14734 chrX 155270560 + 113079726 113079935 MLT2D 439 - 220 427 142160 13 9 7 65 0 1 69 1 0 52 chain 48857 chrX 155270560 + 113091704 113092255 L1PA4 6152 - 0 563 59833 6 0 7 246 0 1 9 0 4 290 chain 18531 chrX 155270560 + 113096226 113096581 THE1D 372 + 2 372 131427 31 74 72 61 26 27 26 3 19 134 chain 184714 chrX 155270560 + 113102511 113105027 L1PA10 4194 - 57 2600 20522 21 3 0 36 1 0 14 4 13 245 15 23 42 8 7 51 0 1 200 0 5 6 11 6 394 10 14 103 19 6 290 0 4 58 0 3 228 0 3 252 10 12 35 2 1 321 5 6 5 1 0 14 0 8 9 0 2 51 10 12 42 chain 8714 chrX 155270560 + 113112362 113112466 L1PA6 6164 - 2 110 167121 64 0 4 40 chain 110082 chrX 155270560 + 113114144 113115581 THE1D-int 1627 + 25 1577 34195 316 7 109 312 7 22 390 19 17 386 chain 7111 chrX 155270560 + 113136835 113136924 L1MC3 1789 - 596 685 176674 89 chain 64667 chrX 155270560 + 113140360 113141135 LTR17 781 - 9 781 50713 330 2 0 114 0 1 18 10 0 153 1 0 28 9 18 110 chain 29169 chrX 155270560 + 113143989 113144296 AluYk11 308 - 1 308 88205 307 chain 18220 chrX 155270560 + 113150918 113151215 Tigger3a 397 - 1 354 132283 52 5 8 132 13 15 38 25 76 32 chain 26979 chrX 155270560 + 113159072 113159430 MER54A 897 + 534 893 96351 6 0 1 98 0 1 109 8 9 130 2 0 5 chain 6372 chrX 155270560 + 113167432 113167508 L1MA4 2864 + 1587 1663 182231 76 chain 33759 chrX 155270560 + 113194868 113195343 LOR1a 498 - 24 498 78005 82 19 16 141 4 5 154 9 10 66 chain 21734 chrX 155270560 + 113211105 113211378 L1P1 4361 + 4056 4328 121261 39 0 1 51 2 1 156 2 1 23 chain 3490 chrX 155270560 + 113219893 113219936 LTR49 580 + 505 548 215505 43 chain 27738 chrX 155270560 + 113231635 113232065 LTR7Y 441 + 0 441 93910 103 9 0 57 68 84 33 0 2 64 0 2 96 chain 37193 chrX 155270560 + 113233844 113234314 LTR5_Hs 974 + 1 974 73242 16 0 4 47 1 0 221 19 505 119 0 14 47 chain 30498 chrX 155270560 + 113234925 113235305 MLT2A1 477 - 92 477 83434 212 1 5 24 3 4 140 chain 10007 chrX 155270560 + 113236759 113236954 LTR49-int 1717 + 1425 1619 160552 24 1 2 60 1 2 11 25 23 23 5 4 45 chain 17889 chrX 155270560 + 113242531 113242732 L1PA5 6144 + 5939 6140 133136 201 chain 33130 chrX 155270560 + 113260775 113261154 L1PA7 6471 - 7 386 79016 379 chain 80403 chrX 155270560 + 113264361 113265297 L1PA5 6144 - 0 939 43428 533 20 25 299 1 0 71 1 0 11 chain 4832 chrX 155270560 + 113273605 113273667 L1P4 1494 - 1174 1236 196994 62 chain 41752 chrX 155270560 + 113273716 113274208 MER9a1 513 + 0 513 66957 203 1 0 42 1 23 245 chain 5030 chrX 155270560 + 113277819 113277900 MADE1 96 + 0 96 194825 21 9 24 51 chain 26507 chrX 155270560 + 113283262 113283647 LTR7 482 + 0 470 98015 69 8 46 109 12 0 7 0 44 39 0 10 41 1 2 11 0 4 88 chain 314873 chrX 155270560 + 113283661 113287407 HERVH-int 3825 + 0 3824 12813 333 1 0 134 10 66 37 1 0 10 1 0 7 8 4 11 16 10 6 1 0 12 2 40 26 2 1 24 29 8 26 14 1 7 0 2 13 0 1 46 0 1 615 0 1 243 4 31 738 1 0 925 0 2 443 chain 30911 chrX 155270560 + 113294420 113294817 LTR7 482 + 0 477 82666 69 8 46 109 0 1 10 0 31 48 0 10 153 chain 28524 chrX 155270560 + 113298067 113298497 MER57A1 433 - 0 433 91085 148 4 5 99 1 3 56 5 35 12 30 0 75 chain 56364 chrX 155270560 + 113300332 113301402 MER4E1 777 + 1 770 54927 17 1 2 215 19 5 179 324 0 37 0 1 69 5 25 20 0 1 49 0 14 135 chain 31323 chrX 155270560 + 113302210 113302656 LTR2 463 - 0 463 81949 16 1 15 22 1 0 16 18 19 23 5 6 134 0 2 210 chain 4595 chrX 155270560 + 113302659 113302717 MER4B 649 + 488 546 199691 58 chain 20925 chrX 155270560 + 113305639 113305911 AluSg7 307 - 24 307 124196 131 0 3 7 3 0 10 1 0 67 0 12 53 chain 21275 chrX 155270560 + 113315314 113315566 MER57A1 433 - 2 423 122945 62 0 169 190 chain 20764 chrX 155270560 + 113315581 113315919 LTR29 598 - 198 598 124735 52 1 10 23 3 2 34 10 41 35 0 25 83 3 0 7 2 0 49 6 10 7 1 0 22 chain 84293 chrX 155270560 + 113322056 113323042 L1PA6 6164 - 3 989 41786 497 0 1 348 1 0 140 chain 87612 chrX 155270560 + 113325623 113326671 L1PA5 6144 - 10 1049 40529 26 0 9 49 31 12 48 0 1 894 chain 9092 chrX 155270560 + 113341719 113341835 L1PA4 6152 + 6031 6152 165110 110 0 5 6 chain 48562 chrX 155270560 + 113354963 113355611 MER39B 650 - 0 648 60070 12 3 0 5 5 7 31 0 1 49 0 4 7 5 1 531 chain 512598 chrX 155270560 + 113365159 113371472 L1PA7 6471 - 111 6466 5912 505 1 0 151 1 4 79 1 0 518 0 6 8 6 0 281 0 12 127 0 4 663 1 0 173 2 0 255 0 1 25 0 4 40 2 1 197 0 1 4 4 3 469 1 5 183 11 0 296 0 1 190 0 1 127 0 1 730 0 1 15 7 26 180 1 0 77 2 3 172 0 1 62 11 16 165 3 0 104 1 0 61 1 0 7 1 0 139 7 14 8 0 1 238 chain 66137 chrX 155270560 + 113375590 113376546 L1PB1 5432 + 4389 5303 50033 237 4 0 52 0 1 244 1 0 4 0 1 64 1 4 105 41 13 24 1 0 5 20 15 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 chain 18805 chrX 155270560 + 113394805 113395162 THE1C 375 + 0 375 130661 13 2 0 34 49 39 49 0 4 36 33 60 106 4 3 31 chain 75403 chrX 155270560 + 113410188 113411269 MER11B 1079 - 5 1079 45820 23 1 0 131 6 8 32 0 1 53 0 1 47 48 40 20 1 0 175 8 7 12 0 1 60 1 0 34 1 0 68 4 7 30 7 5 319 chain 522929 chrX 155270560 + 113426399 113433261 L1PA7 6471 + 0 6463 4873 404 1 2 155 0 1 287 1 0 7 1 2 22 0 1 350 0 4 208 0 6 8 6 0 380 0 1 28 2 0 287 0 1 194 0 1 75 0 3 205 14 0 254 0 4 303 13 31 117 0 1 86 0 1 47 0 2 6 4 2 456 0 1 20 0 4 520 0 1 145 2 0 578 0 1 60 0 1 348 1 0 77 0 2 63 4 0 61 438 11 120 1 0 193 0 4 45 0 1 265 chain 113531 chrX 155270560 + 113439113 113440641 THE1B-int 1605 - 13 1605 33218 464 1 0 4 6 7 41 2 3 319 6 0 8 6 1 48 8 11 46 6 1 58 4 10 111 1 65 114 4 10 271 chain 8337 chrX 155270560 + 113444947 113445105 MER73 639 - 14 168 169188 38 6 7 43 28 23 43 chain 70087 chrX 155270560 + 113480897 113481700 L1PA6 6164 - 3 811 48356 792 0 5 11 chain 9598 chrX 155270560 + 113484789 113484897 L1PA4 6152 + 6045 6152 162609 102 1 0 5 chain 26046 chrX 155270560 + 113493717 113494112 MSTC 436 + 0 424 99841 96 8 15 26 0 24 61 0 1 11 8 0 52 15 17 37 0 3 81 chain 120625 chrX 155270560 + 113512786 113514348 LTR12C 1709 - 0 1708 30833 84 1 0 84 103 0 240 0 2 71 0 4 33 0 207 147 1 0 27 6 43 460 10 11 295 chain 8765 chrX 155270560 + 113512956 113513058 LTR12C 1709 - 168 270 156210 102 chain 2377 chrX 155270560 + 113585029 113585074 LTR82B 718 - 488 542 234406 23 6 15 16 chain 4595 chrX 155270560 + 113595493 113595546 LTR54B 464 - 10 63 199699 53 chain 33426 chrX 155270560 + 113613918 113614369 MLT2A1 477 - 0 477 78522 20 1 0 26 6 0 8 6 0 10 0 32 137 0 1 4 1 0 65 8 12 21 0 1 90 0 2 48 chain 30357 chrX 155270560 + 113627351 113627793 MLT2A1 477 + 0 477 83762 169 4 1 9 1 2 23 0 1 36 2 0 135 10 8 13 8 48 32 chain 162006 chrX 155270560 + 113628183 113630021 L1PA5 6144 - 5 1856 23064 333 0 1 8 0 8 488 0 4 306 9 0 124 0 9 570 chain 133413 chrX 155270560 + 113630022 113632814 L1P1 4361 + 2738 4284 27337 476 1244 0 237 0 2 55 1 0 498 3 0 144 1 0 80 0 1 53 chain 111455 chrX 155270560 + 113630504 113631729 L1PA3long 6157 + 4922 6147 33820 1225 chain 13173 chrX 155270560 + 113636631 113636787 L1PA2 6032 - 268 417 147572 9 7 0 140 chain 23124 chrX 155270560 + 113636787 113637043 L1PA2 6032 + 5776 6032 115023 256 chain 51777 chrX 155270560 + 113692367 113692936 L1PA3long 6157 + 5573 6142 57767 569 chain 39828 chrX 155270560 + 113701124 113701566 LTR7 482 + 0 474 69582 224 0 1 23 0 31 195 chain 290613 chrX 155270560 + 113701576 113705254 HERVH-int 3825 + 0 3825 13983 212 0 11 250 13 69 28 1 0 10 1 0 9 4 0 14 7 1 15 45 0 11 4 1 25 1 0 13 7 8 6 2 0 11 63 0 23 22 1 11 2 1 49 1 0 444 15 0 458 8 35 411 5 6 213 0 4 754 0 1 15 8 218 487 chain 39503 chrX 155270560 + 113706513 113706984 LTR7 482 + 0 482 70017 143 25 5 116 0 31 187 chain 70495 chrX 155270560 + 113720674 113722387 L1PA11 4918 - 410 1351 48169 20 1 0 10 5 3 81 21 24 39 1 0 218 0 1 37 769 0 97 0 1 58 0 1 149 5 0 202 chain 38853 chrX 155270560 + 113721124 113721550 L1PA4 6152 - 12 438 70938 426 chain 29064 chrX 155270560 + 113721550 113721876 L1PA4 6152 + 5289 5615 87388 326 chain 22592 chrX 155270560 + 113726767 113727011 L1PA3long 6157 - 923 1167 116697 244 chain 86350 chrX 155270560 + 113727011 113727950 L1PA3long 6157 + 5218 6157 41022 939 chain 12310 chrX 155270560 + 113731197 113731383 Tigger1 2417 - 0 201 150977 38 16 33 95 2 0 35 chain 4090 chrX 155270560 + 113741706 113741981 L1MB7 1623 + 1146 1413 206079 41 209 201 25 chain 353965 chrX 155270560 + 113755350 113759316 L1PA4 6152 + 2151 6136 11508 328 1 17 288 5 0 199 0 1 266 0 3 1183 0 1 261 0 1 1279 4 6 152 chain 23921 chrX 155270560 + 113761195 113761487 AluSp 311 + 11 299 110800 15 1 0 261 3 0 12 chain 4827 chrX 155270560 + 113761490 113761730 L1MB1 2102 + 1877 2066 197044 52 113 108 15 46 0 14 chain 38507 chrX 155270560 + 113776563 113777245 L1PB1 5432 - 16 634 71428 6 3 0 5 0 2 10 1 0 20 1 0 27 2 0 14 1 0 5 3 1 18 25 12 16 1 0 44 1 0 9 8 7 48 8 6 7 2 0 3 2 0 10 1 0 11 1 0 13 52 20 304 chain 63335 chrX 155270560 + 113777248 113777940 L1PA4 6152 - 1 694 51305 338 0 1 354 chain 3297 chrX 155270560 + 113784906 113784943 MADE1 96 - 57 94 219033 37 chain 53655 chrX 155270560 + 113793036 113793615 L1PA3long 6157 - 290 869 56581 579 chain 24832 chrX 155270560 + 113793615 113793889 L1PA3long 6157 + 5871 6144 105716 137 1 0 136 chain 24858 chrX 155270560 + 113794270 113794568 AluYk4 311 + 0 299 105583 211 7 8 80 chain 24802 chrX 155270560 + 113807134 113807415 AluSp 311 + 16 297 105879 281 chain 39815 chrX 155270560 + 113835732 113836183 LTR7 482 - 0 482 69602 190 0 31 261 chain 299504 chrX 155270560 + 113837445 113841247 HERVH-int 3825 - 0 3825 13453 339 0 1 36 5 2 109 7 217 163 0 1 824 5 6 411 4 31 462 15 0 444 0 1 48 2 1 11 66 1 18 2 1 42 1 0 7 22 19 11 1 0 15 70 0 24 1 0 10 1 0 21 62 0 17 5 0 309 0 11 212 chain 39020 chrX 155270560 + 113841257 113841698 LTR7 482 - 8 482 70715 51 0 1 127 0 31 43 0 1 220 chain 42177 chrX 155270560 + 113847219 113848085 MER41A 554 - 6 554 66431 67 7 12 60 0 4 16 327 0 389 chain 42235 chrX 155270560 + 113873018 113873483 L1PA2 6032 - 11 478 66353 421 0 2 44 chain 26818 chrX 155270560 + 113893398 113893773 THE1C 375 - 0 375 96916 26 1 0 55 6 8 166 3 0 50 7 9 61 chain 43866 chrX 155270560 + 113923335 113924112 L1PB1 5432 - 19 730 64370 12 2 1 7 1 0 23 1 0 24 2 0 9 44 32 9 3 0 16 2 1 15 1 0 27 1 0 16 2 1 51 2 0 10 5 1 14 1 0 6 1 0 24 43 11 233 1 0 4 5 6 152 2 0 6 chain 554120 chrX 155270560 + 113934992 113941135 L1PA3long 6157 + 6 6157 932 1033 0 1 181 0 1 1097 5 6 946 0 2 673 0 1 28 0 1 169 0 1 1160 0 1 590 0 1 58 2 0 201 chain 541823 chrX 155270560 + 113954924 113960940 L1PA2 6032 - 0 6021 2537 1802 0 4 2033 1 2 1273 0 1 661 1 0 245 chain 19981 chrX 155270560 + 113972933 113973211 L1PA8 5853 + 5582 5853 127203 28 2 0 72 1 0 10 6 3 32 0 1 12 2 1 19 1 0 93 chain 54951 chrX 155270560 + 113977167 113977753 L1HS 6032 - 0 586 55739 586 chain 36987 chrX 155270560 + 113979459 113980068 L1MA2 4263 + 3465 4076 73525 32 1 0 87 2 0 4 1 0 28 0 25 21 1 0 43 11 9 81 14 11 22 8 3 102 33 32 93 7 0 18 chain 4826 chrX 155270560 + 113987804 113987864 MLT1D 503 + 443 503 197057 60 chain 25739 chrX 155270560 + 113989397 113989697 AluSq10 312 + 0 301 101123 282 0 1 18 chain 127909 chrX 155270560 + 114028941 114030363 L1PA4 6152 - 1 1436 28596 870 0 13 552 chain 99457 chrX 155270560 + 114037303 114038389 L1PA3long 6157 - 7 1093 36913 1086 chain 27120 chrX 155270560 + 114055082 114055414 THE1A 353 + 0 342 95868 110 1 0 7 3 14 211 chain 553023 chrX 155270560 + 114065260 114071295 L1PA2 6032 - 2 6032 1065 156 1 0 3675 4 0 2199 chain 2953 chrX 155270560 + 114074961 114075026 L1MEb 951 + 857 921 226016 25 2 0 6 10 11 22 chain 36460 chrX 155270560 + 114081765 114082160 L1PA3long 6157 + 5762 6157 74287 395 chain 15488 chrX 155270560 + 114090554 114090731 L1P1 4361 + 4151 4328 139928 134 0 1 19 1 0 23 chain 60190 chrX 155270560 + 114101895 114102823 L1MA1 4479 - 297 1200 52736 10 7 0 9 3 1 11 1 0 9 1 0 35 3 1 28 1 0 126 3 0 5 1 0 82 0 1 5 1 0 14 8 6 12 1 0 71 12 11 8 2 0 22 1 0 134 0 1 37 0 1 22 3 0 18 1 0 113 3 0 80 7 12 18 chain 50534 chrX 155270560 + 114103409 114103977 L1PA6 6164 - 2 570 58626 568 chain 20342 chrX 155270560 + 114114048 114114461 L1PB1 5432 - 18 414 126094 10 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 16 6 6 2 0 15 1 0 40 5 21 47 23 17 10 5 4 4 1 0 24 5 0 7 3 4 85 chain 9521 chrX 155270560 + 114119819 114119953 Tigger3a 397 + 141 318 162974 7 0 10 76 5 38 46 chain 82184 chrX 155270560 + 114132483 114133778 L1PA11 4918 - 289 1562 42689 17 64 48 10 1 0 15 13 9 10 27 18 14 1 0 9 7 5 72 21 18 4 0 1 4 1 0 44 1 0 59 1 9 194 4 5 4 0 1 389 0 2 63 0 4 12 21 20 213 chain 7164 chrX 155270560 + 114151220 114151313 MLT2A2 560 - 467 560 176316 93 chain 44910 chrX 155270560 + 114160180 114160845 MER50 708 + 10 682 63162 128 5 8 11 3 15 42 13 4 163 13 14 79 33 34 124 1 0 50 chain 15672 chrX 155270560 + 114163378 114163627 LTR62 707 + 380 635 139359 17 6 4 65 0 4 63 23 27 75 chain 514435 chrX 155270560 + 114171507 114178192 L1PA7 6471 - 1 6471 5733 4 1 0 157 15 14 501 12 10 82 0 2 76 1 4 122 22 1 305 0 1 228 315 0 565 7 8 26 0 1 45 0 1 5 0 10 41 0 1 372 0 1 194 0 16 27 2 1 127 1 2 554 12 13 42 1 5 103 6 38 119 5 6 151 1 0 454 1 0 975 0 7 196 0 1 201 6 6 160 11 55 434 chain 115006 chrX 155270560 + 114181024 114182566 THE1B-int 1605 - 0 1578 32794 201 2 3 274 0 1 329 50 46 34 10 12 66 6 13 55 0 1 27 6 9 83 0 25 399 chain 3226 chrX 155270560 + 114183007 114183046 MER31A 484 - 31 70 220496 39 chain 21705 chrX 155270560 + 114189162 114189445 AluY 311 + 30 301 121369 68 0 1 24 7 3 168 9 0 7 chain 31432 chrX 155270560 + 114198636 114199078 MER4A1 472 - 0 467 81763 67 12 14 138 8 29 196 1 0 6 0 1 4 0 2 10 chain 30743 chrX 155270560 + 114211299 114211633 L1PA3long 6157 + 5177 5511 82964 334 chain 58366 chrX 155270560 + 114211633 114212278 L1PA3long 6157 + 5512 6156 53767 640 1 0 4 chain 23147 chrX 155270560 + 114215206 114215516 AluSp 311 - 17 307 114904 13 20 0 277 chain 6669 chrX 155270560 + 114219506 114219585 L1PA8A 6298 + 6212 6291 179915 79 chain 242371 chrX 155270560 + 114228825 114232004 HERVL-int 5654 - 13 5654 16653 126 0 1 105 0 2 525 0 1 304 16 2494 170 1 2 100 9 18 33 11 15 509 0 1 397 55 17 174 1 0 229 0 1 184 0 3 230 chain 58218 chrX 155270560 + 114233445 114234563 MER41-int 2638 + 1794 2614 53855 82 5 3 23 1 0 6 312 0 125 2 0 5 0 1 56 2 0 13 10 16 30 0 4 134 0 9 151 1 2 160 chain 15677 chrX 155270560 + 114235890 114236080 MER50 708 - 0 189 139344 162 1 0 27 chain 13047 chrX 155270560 + 114274815 114274959 L1PA4 6152 + 6002 6146 148044 144 chain 29316 chrX 155270560 + 114288557 114288888 L1PA4 6152 + 5816 6152 87455 325 0 5 6 chain 27646 chrX 155270560 + 114296319 114297657 LTR12 884 + 0 365 94221 25 1 0 55 239 0 109 437 0 89 148 0 17 107 0 55 41 0 15 chain 11744 chrX 155270560 + 114296400 114296615 LTR12 884 + 121 336 134891 143 0 25 18 31 6 23 chain 2334 chrX 155270560 + 114296788 114296814 LTR12 884 + 56 82 234936 26 chain 2954 chrX 155270560 + 114296853 114296942 LTR12 884 + 55 144 142145 89 chain 1620 chrX 155270560 + 114296942 114297002 LTR12 884 + 276 336 157758 60 chain 6643 chrX 155270560 + 114297020 114297185 LTR12 884 + 206 255 163650 20 116 0 29 chain 4904 chrX 155270560 + 114297081 114297156 LTR12 884 + 243 333 194082 58 4 19 13 chain 3000 chrX 155270560 + 114297297 114297332 LTR12 884 + 169 204 156982 35 chain 4847 chrX 155270560 + 114297338 114297422 LTR12 884 + 235 319 164106 84 chain 2366 chrX 155270560 + 114297439 114297466 LTR12 884 + 97 124 178697 27 chain 1904 chrX 155270560 + 114297466 114297499 LTR12 884 + 347 401 164106 18 0 21 15 chain 3464 chrX 155270560 + 114297504 114297546 LTR12 884 + 55 97 149447 42 chain 3381 chrX 155270560 + 114297601 114297642 LTR12 884 + 152 193 149447 41 chain 4273 chrX 155270560 + 114300697 114300914 MLT1J1 437 - 177 394 203582 19 147 148 35 1 0 15 chain 550640 chrX 155270560 + 114315002 114321172 L1PA3long 6157 - 0 6157 1358 790 2 0 477 1 0 940 0 1 170 1 0 680 0 1 303 5 0 1552 0 1 193 0 2 200 17 0 143 0 7 542 0 1 154 chain 24051 chrX 155270560 + 114331532 114331818 AluSc5 308 + 5 294 110038 26 0 1 242 1 3 17 chain 299865 chrX 155270560 + 114334206 114338347 L1PA11 4918 + 439 4567 13431 443 14 0 8 0 14 699 6 10 140 12 13 31 2 1 14 1 2 346 1 0 123 31 37 153 0 2 65 2 0 47 3 1 120 48 17 91 5 6 31 1 2 278 0 1 30 7 8 127 0 3 161 4 0 203 2 0 245 1 0 417 5 0 60 14 46 34 8 6 14 1 0 16 48 35 13 4 3 12 chain 32691 chrX 155270560 + 114344571 114345007 MER4A1 472 - 14 472 79701 53 8 9 148 3 24 224 chain 272437 chrX 155270560 + 114352762 114355744 L1PA3long 6157 + 3175 6156 15051 2977 1 0 4 chain 19640 chrX 155270560 + 114362878 114363161 MER44A 345 - 26 317 128282 59 7 0 53 7 12 85 5 15 67 chain 112934 chrX 155270560 + 114365678 114367003 L1PA5 6144 - 3 1358 33391 49 0 4 92 13 14 615 0 20 176 0 1 4 1 0 15 0 5 360 chain 25890 chrX 155270560 + 114375805 114376176 MER4A1 472 - 44 436 100484 23 12 13 51 1 0 53 20 41 211 chain 176799 chrX 155270560 + 114376477 114380927 L1MA2 4263 + 517 4217 21273 138 5 7 58 5 4 73 7 9 235 33 23 211 1635 965 7 1 0 38 8 49 187 0 2 16 7 4 13 0 4 84 5 3 121 1 0 4 1 2 133 21 22 440 1 3 86 1 5 77 1 3 38 7 4 5 1 0 72 1 0 100 0 2 32 13 10 152 15 13 87 7 0 14 10 13 15 194 85 19 4 2 11 chain 19962 chrX 155270560 + 114378514 114378872 THE1B 368 + 0 368 127268 47 35 36 80 12 11 24 10 11 4 0 1 10 11 19 125 chain 2967 chrX 155270560 + 114398031 114398065 Tigger4b 360 - 0 34 225741 34 chain 20029 chrX 155270560 + 114412202 114412471 L1PA8 5853 - 0 263 127045 93 1 0 13 1 0 55 1 0 13 12 11 60 2 0 18 chain 5459 chrX 155270560 + 114432643 114432710 L1PA8 5853 - 0 67 190422 67 chain 43463 chrX 155270560 + 114440854 114441364 MER9a3 513 + 0 513 64856 18 0 2 414 0 1 78 chain 22969 chrX 155270560 + 114443815 114444159 THE1B 368 + 0 368 115756 40 0 15 117 1 0 24 3 0 5 29 42 125 chain 127598 chrX 155270560 + 114444159 114445725 THE1B-int 1605 + 0 1591 28674 264 2 0 166 0 25 10 0 2 1124 chain 23059 chrX 155270560 + 114445741 114446083 THE1B 368 + 2 368 115359 42 0 15 113 1 0 26 35 45 125 chain 73150 chrX 155270560 + 114451797 114452632 L1PA7 6471 - 5 840 46944 835 chain 232901 chrX 155270560 + 114476116 114478688 L1PA3long 6157 - 0 2573 17146 774 1 3 831 1 0 965 chain 12608 chrX 155270560 + 114515393 114515542 MER107 203 - 54 203 149812 149 chain 27909 chrX 155270560 + 114521230 114521550 L1PA4 6152 + 5826 6152 93324 212 0 1 102 0 5 6 chain 85411 chrX 155270560 + 114531781 114533941 L1M1 2793 - 783 2298 41376 33 0 3 147 0 1 150 0 1 4 0 1 20 7 11 62 0 2 173 555 16 103 19 14 21 4 0 70 1 0 4 0 3 31 1 0 21 21 21 40 7 9 46 1 0 87 26 23 54 1 0 7 11 9 21 1 0 27 23 18 13 59 42 40 2 0 8 173 100 11 26 21 12 1 0 9 1 0 6 chain 13672 chrX 155270560 + 114534866 114535041 MER30 238 - 8 201 145699 100 6 24 69 chain 28383 chrX 155270560 + 114546972 114547371 MER51B 395 - 0 395 91653 60 0 4 74 7 8 4 1 0 24 0 1 5 0 1 5 0 3 166 13 0 40 chain 23427 chrX 155270560 + 114553270 114553689 MER51B 395 - 0 395 113494 85 0 3 6 9 6 41 31 30 14 0 1 132 22 11 26 20 7 33 chain 21321 chrX 155270560 + 114554110 114554507 L1MA1 4479 + 3038 3413 122795 107 1 0 12 2 0 17 22 17 60 20 12 21 0 2 30 32 27 46 3 0 24 chain 4027 chrX 155270560 + 114556778 114556826 MER34C_ 573 - 55 103 206974 48 chain 38014 chrX 155270560 + 114558397 114558924 MER41A 554 - 8 554 72112 62 11 16 40 0 1 128 9 10 196 0 1 63 1 12 17 chain 134651 chrX 155270560 + 114581076 114582891 SVA_F 1814 - 0 1479 27084 10 2 0 617 1 0 10 201 0 163 148 0 51 0 15 60 0 1 552 chain 14361 chrX 155270560 + 114581719 114581916 SVA_F 1814 - 637 877 101790 88 18 46 4 0 1 37 1 0 38 1 16 10 chain 2448 chrX 155270560 + 114582200 114582228 SVA_F 1814 - 645 673 210972 28 chain 28098 chrX 155270560 + 114594226 114594600 THE1C 375 + 2 375 92654 64 0 2 57 3 0 56 3 4 4 1 0 26 0 2 4 1 0 128 1 0 26 chain 52154 chrX 155270560 + 114596716 114597402 LTR12_ 688 + 0 688 57525 22 1 0 16 3 1 51 26 1 30 0 25 21 2 1 91 1 0 253 1 0 40 0 8 128 chain 45820 chrX 155270560 + 114616284 114616946 L1MA2 4263 + 3488 4114 62209 86 2 0 10 6 0 78 1 0 91 14 0 56 3 0 149 1 0 6 2 1 93 7 0 46 1 0 10 chain 25451 chrX 155270560 + 114667958 114668248 AluSq10 312 - 11 302 102455 158 0 1 132 chain 26467 chrX 155270560 + 114670506 114670791 AluYa5 310 + 16 300 98178 102 1 0 182 chain 22450 chrX 155270560 + 114688784 114689063 AluSp 311 + 10 286 118250 53 0 2 20 5 0 201 chain 22067 chrX 155270560 + 114712533 114712815 AluSp 311 + 11 293 119931 203 0 1 45 1 3 19 3 0 11 chain 3376 chrX 155270560 + 114715595 114715704 MLT1L 557 - 420 527 217557 19 57 55 33 chain 265606 chrX 155270560 + 114740237 114743586 HERV9-int 5642 - 2441 5642 15412 366 11 0 365 1 0 294 0 1 17 9 17 582 2 1 443 30 11 75 85 1 182 3 1 41 20 19 45 0 1 21 6 0 117 7 0 577 32 6 18 chain 42258 chrX 155270560 + 114743608 114744165 LTR12 884 - 136 884 66320 25 0 103 214 6 28 40 0 1 166 0 66 80 1 0 25 chain 48818 chrX 155270560 + 114744438 114745059 LTR12 884 + 0 648 59862 25 1 0 109 0 2 204 1 2 36 6 28 228 0 3 11 chain 6450 chrX 155270560 + 114762871 114762962 MER53 195 - 103 192 181638 17 3 1 71 chain 38172 chrX 155270560 + 114772068 114772530 LTR2 463 - 0 463 71880 88 14 15 360 chain 422032 chrX 155270560 + 114772538 114777785 Harlequin-int 5206 - 8 5069 9487 655 2 1 598 0 10 14 0 1 243 3 0 1200 0 1 213 1 2 101 0 56 400 0 2 412 1 0 103 15 5 174 1 0 56 241 0 468 4 0 106 2 1 57 6 7 109 0 4 62 chain 34946 chrX 155270560 + 114779529 114779988 LTR2 463 - 0 463 76270 88 14 15 55 16 18 144 0 1 142 chain 4511 chrX 155270560 + 114786604 114786687 MER58B 340 + 247 332 200667 23 20 22 40 chain 8842 chrX 155270560 + 114788118 114788252 L1MB8 1703 - 115 247 166422 29 12 11 52 1 0 40 chain 25979 chrX 155270560 + 114808898 114809193 AluSp 311 - 16 311 100098 295 chain 14065 chrX 155270560 + 114835793 114835952 L1PA5 6144 + 5982 6141 144334 159 chain 22286 chrX 155270560 + 114865384 114865681 AluSp 311 - 28 310 118965 75 1 2 74 1 0 4 19 4 123 chain 225045 chrX 155270560 + 114903029 114905492 L1PA3long 6157 - 0 2471 17593 144 1 5 1654 0 4 664 chain 24573 chrX 155270560 + 114905786 114906073 AluSp 311 + 12 302 107117 79 0 3 208 chain 65900 chrX 155270560 + 114908058 114908824 L1P2 5180 + 1831 2598 50139 495 5 6 266 chain 27273 chrX 155270560 + 114914228 114914529 AluYc3 301 - 4 301 95363 185 1 0 6 3 0 106 chain 14734 chrX 155270560 + 114916151 114916333 MER30 238 - 0 192 142159 111 2 12 69 chain 29705 chrX 155270560 + 114917971 114918295 AluYb8 318 - 0 318 85808 186 6 0 132 chain 4992 chrX 155270560 + 114927469 114927630 MER4C 627 - 11 167 195222 49 86 81 26 chain 26476 chrX 155270560 + 114940757 114941070 AluSp 311 - 0 311 98140 183 2 0 128 chain 44219 chrX 155270560 + 114942763 114943264 LTR2C 499 + 0 499 63919 172 3 0 305 0 1 21 chain 25640 chrX 155270560 + 114953774 114954650 L1PB1 5432 - 9 496 101539 11 1 0 8 1 0 11 1 0 23 1 0 20 29 24 29 18 3 13 313 0 42 21 19 52 2 0 9 5 1 14 2 1 28 7 0 9 63 27 143 chain 125436 chrX 155270560 + 115031054 115032472 L1PA5 6144 + 4718 6140 29268 557 0 4 861 chain 33514 chrX 155270560 + 115032765 115033231 LTR2 463 - 0 463 78385 44 0 4 50 43 5 74 0 4 93 7 27 104 0 7 51 chain 2564 chrX 155270560 + 115032871 115032902 LTR2 463 + 323 354 223809 31 chain 333220 chrX 155270560 + 115033236 115038316 Harlequin-int 5206 - 5 5081 12082 324 1 5 1278 7 1 13 0 1 4 1 0 161 0 5 166 0 1 297 8 11 181 2 1 593 7 0 20 1076 1069 225 0 1 166 1 0 8 0 6 291 1 0 73 3 0 165 0 2 8 chain 92997 chrX 155270560 + 115036299 115037375 Harlequin-int 5206 + 1069 2143 38609 220 0 1 563 7 4 286 chain 35996 chrX 155270560 + 115040112 115040555 LTR2 463 - 0 463 74898 274 7 27 162 chain 150761 chrX 155270560 + 115070615 115073464 MER57-int 2662 + 40 2498 24507 30 46 29 9 1 0 118 9 252 16 1 0 24 5 0 60 0 2 109 4 0 157 23 31 69 1 0 78 0 3 69 0 1 6 10 10 13 341 0 240 0 2 32 1 0 4 0 1 30 1 0 6 1 2 290 7 3 93 0 7 59 12 14 142 8 20 35 316 0 96 13 19 118 3 0 82 12 26 16 0 2 33 chain 391972 chrX 155270560 + 115077461 115083078 L1PB1 5432 + 19 5413 10394 27 64 65 132 5 8 147 0 2 6 5 2 65 0 1 5 0 3 682 0 1 49 12 1 180 2 0 5 259 49 95 0 4 56 0 5 434 3 14 9 12 0 24 2 1 22 0 2 465 0 3 352 0 4 326 0 1 153 0 2 300 4 0 4 22 0 11 4 1 43 0 1 294 3 5 124 0 2 141 1 2 260 8 13 41 13 16 425 8 10 22 1 0 7 20 15 9 2 0 53 1 2 13 0 15 31 1 0 15 24 12 19 8 5 4 1 0 10 2 0 19 1 0 5 1 0 34 1 0 9 chain 15232 chrX 155270560 + 115095608 115095774 L1PA4 6152 + 5977 6143 140684 166 chain 429371 chrX 155270560 + 115099015 115104337 L1PA7 6471 + 0 6461 9325 330 0 1 81 6 1 1483 0 3 108 7 0 18 6 0 355 0 1 60 1 0 200 7 2 58 1 0 312 0 1 172 0 15 10 1 3 7 0 1 275 1 0 25 3 1 46 18 15 131 0 4 136 2 1141 194 2 1 100 0 1 208 0 1 119 7 6 72 0 2 438 0 1 322 chain 31463 chrX 155270560 + 115108082 115109327 L1M1 2793 + 568 1391 81709 11 1 0 11 3 0 8 133 69 28 227 199 9 1 0 80 51 50 78 0 4 9 1 2 4 1 0 48 321 0 90 16 9 114 chain 90745 chrX 155270560 + 115112328 115113759 L1PA13 3608 - 144 1510 39376 16 2 0 7 2 0 45 35 1 4 1 0 35 2 0 21 18 17 43 3 1 96 20 19 31 1 0 37 5 6 181 16 5 167 2 1 107 7 6 20 0 2 355 3 0 5 4 0 27 11 11 25 6 4 71 chain 5722 chrX 155270560 + 115127321 115127383 HERVH-int 3825 + 0 62 187911 62 chain 15400 chrX 155270560 + 115138408 115138742 THE1B 368 - 20 368 140201 36 7 6 56 60 74 40 45 46 90 chain 6278 chrX 155270560 + 115141447 115141627 MLT1A1 405 + 225 394 182957 35 61 60 24 19 9 41 chain 516331 chrX 155270560 + 115145860 115151975 L1PA5 6144 - 12 6144 5545 106 0 1 6 0 3 345 4 8 286 1 0 31 6 9 395 14 0 320 1 0 1365 1 3 418 9 2 265 0 7 178 0 3 186 0 2 943 1 10 69 9 0 1016 0 1 11 12 26 117 chain 37486 chrX 155270560 + 115163903 115164329 L1PA5 6144 - 383 809 72831 426 chain 38868 chrX 155270560 + 115164329 115164783 L1PA5 6144 + 5690 6144 70917 454 chain 7075 chrX 155270560 + 115164784 115164874 L1PB1 5432 + 3630 3720 176913 90 chain 23317 chrX 155270560 + 115164903 115165209 L1PB1 5432 + 3738 4046 114115 140 1 0 72 4 7 89 chain 34359 chrX 155270560 + 115165209 115165647 L1PB1 5432 + 4047 4485 77116 338 4 3 37 0 1 59 chain 42278 chrX 155270560 + 115165708 115166266 L1PB1 5432 + 4546 5103 66299 80 3 0 365 0 3 10 1 0 99 chain 5925 chrX 155270560 + 115166267 115166385 L1PB1 5432 + 5105 5212 185940 9 3 0 24 1 0 9 1 0 9 17 11 45 chain 3371 chrX 155270560 + 115166393 115166452 L1PB1 5432 + 5219 5277 217646 18 5 4 36 chain 31428 chrX 155270560 + 115166516 115166973 MER9a3 513 + 44 513 81770 56 10 11 52 28 29 64 1 0 40 0 10 128 0 1 78 chain 362934 chrX 155270560 + 115167656 115172214 HERVK9-int 4720 + 350 4718 11294 668 0 1 123 3 5 479 5 6 121 8 9 17 0 1 720 0 1 130 0 4 840 0 3 412 205 0 588 0 1 226 1 0 4 0 1 8 chain 31840 chrX 155270560 + 115172228 115172708 MER9a3 513 + 37 513 81105 68 5 6 68 12 13 64 1 0 40 0 10 102 22 6 17 14 15 67 chain 536299 chrX 155270560 + 115178157 115184172 L1PA3long 6157 - 1 6151 3411 6 2 0 252 1 0 2276 0 9 381 0 123 977 0 1 961 0 3 926 0 1 33 4 5 196 chain 484840 chrX 155270560 + 115195162 115200834 L1PA4 6152 - 9 6149 7563 209 1 9 112 0 1 1460 0 4 484 9 1 35 3 4 620 0 1 31 2 1 126 0 1 865 0 1 4 1 0 306 1 2 302 0 449 745 0 7 117 0 4 239 chain 50432 chrX 155270560 + 115203977 115204665 L1P3 4156 + 2810 3502 58688 61 0 1 19 9 4 195 0 1 206 0 6 110 1 0 6 0 1 55 13 14 13 chain 268291 chrX 155270560 + 115219454 115223282 L1PA8 5853 - 2 5803 15273 91 1 0 19 8 7 55 2 1 70 2 0 44 1 0 550 13 8 280 0 1 391 2 0 174 1 2179 73 0 2 149 0 3 212 286 1 179 0 113 525 0 1 72 0 6 29 0 4 304 18 6 70 1 0 121 37 16 13 1 0 10 2 0 22 chain 1458 chrX 155270560 + 115232143 115232215 L1M1 2793 + 2246 2315 142393 62 3 0 7 chain 22128 chrX 155270560 + 115232379 115232679 AluSq10 312 - 3 301 119672 26 4 1 161 10 11 99 chain 3138 chrX 155270560 + 115232712 115232867 L1M1 2793 + 2495 2652 142393 126 5 7 24 chain 34700 chrX 155270560 + 115236934 115237382 LTR7 482 + 0 475 76624 100 21 15 118 0 31 122 0 2 87 chain 31041 chrX 155270560 + 115247874 115248292 L1P5 443 + 7 434 82452 30 6 7 89 0 8 293 chain 531497 chrX 155270560 + 115252454 115258591 L1PA4 6152 + 0 6143 4021 271 1 0 449 0 4 438 0 3 67 0 1 78 1 0 786 4 6 386 4 0 684 1 0 29 2 1 2091 0 4 845 chain 88927 chrX 155270560 + 115272368 115273562 THE1A-int 1579 + 360 1574 40035 198 2 1 59 2 1 6 14 0 99 0 1 11 1 13 182 1 2 7 1 0 174 7 30 262 1 0 4 0 1 150 1 0 8 0 1 4 chain 3453 chrX 155270560 + 115277023 115277061 L1MCa 1829 - 1330 1368 216127 38 chain 557452 chrX 155270560 + 115290461 115296593 L1PA3long 6157 + 10 6142 562 3167 1 0 1463 0 1 1501 chain 74387 chrX 155270560 + 115315334 115316184 L1PA5 6144 + 5274 6131 46323 73 1 0 75 0 7 572 0 1 129 chain 30163 chrX 155270560 + 115318593 115318908 AluYb9 318 - 3 318 84303 315 chain 76702 chrX 155270560 + 115321116 115322091 L1PA7 6471 - 12 1081 45120 160 1 117 475 30 6 86 0 2 223 chain 33212 chrX 155270560 + 115322091 115322468 L1PA7 6471 + 5037 5414 78859 377 chain 22783 chrX 155270560 + 115339578 115339863 L1PA6 6164 - 8 290 116661 33 3 0 249 chain 28976 chrX 155270560 + 115348166 115348527 L1PA7 6471 - 5 362 89107 52 0 1 115 3 1 182 3 0 6 chain 55972 chrX 155270560 + 115356234 115356985 MER4E1 777 - 17 777 55139 162 0 1 32 22 25 104 0 3 265 1 0 127 17 20 21 chain 49417 chrX 155270560 + 115374639 115375239 LTR12 884 + 0 754 59443 209 13 167 378 chain 313704 chrX 155270560 + 115375261 115379213 HERV9-int 5642 + 5 5642 12867 594 6 5 191 1 0 308 83 0 132 10 9 1009 0 6 581 0 1795 294 0 1 26 3 4 269 1 0 218 16 14 22 0 2 12 3 1 26 4 3 16 1 2 40 1 0 7 0 1 5 28 5 19 4 0 3 2 0 17 chain 68376 chrX 155270560 + 115381830 115382748 LTR12 884 + 32 869 49097 338 0 22 263 103 0 214 chain 416051 chrX 155270560 + 115383963 115388764 L1PA4 6152 + 0 6141 9640 967 0 1 537 0 1305 273 0 33 58 1 0 764 0 1 1558 0 1 643 chain 24457 chrX 155270560 + 115389952 115390251 AluY 311 + 4 303 107769 101 5 4 23 0 1 170 chain 55165 chrX 155270560 + 115400896 115401526 L1PA5 6144 - 0 629 55605 11 3 1 326 0 1 290 chain 9029 chrX 155270560 + 115414636 115414789 L1MA3 4352 + 4157 4302 165442 77 5 1 18 7 5 24 1 0 6 1 0 14 chain 24467 chrX 155270560 + 115418221 115418495 L1PA8 5853 - 289 563 107724 274 chain 32717 chrX 155270560 + 115420246 115420668 MER41C 542 + 0 486 79658 49 0 1 231 0 62 47 2 1 6 0 2 87 chain 12357 chrX 155270560 + 115425505 115425653 MER41C 542 + 393 542 150815 121 0 1 27 chain 107145 chrX 155270560 + 115441982 115443166 L1PA3long 6157 + 3064 4247 34934 372 2 0 510 0 1 300 chain 174807 chrX 155270560 + 115443166 115445074 L1PA3long 6157 + 4249 6157 21490 1908 chain 25658 chrX 155270560 + 115450155 115450626 L1M1 2793 + 772 1247 101457 25 16 15 19 2 0 8 1 0 31 43 44 80 1 0 4 0 1 4 1 0 19 5 15 97 8 7 39 1 0 67 chain 5445 chrX 155270560 + 115455321 115455720 MER5A1 166 - 20 106 190573 35 318 5 46 chain 179937 chrX 155270560 + 115463536 115465743 HERVH-int 3825 + 1174 3566 20999 52 15 0 206 11 1 870 0 1 498 1 0 318 37 247 199 chain 28318 chrX 155270560 + 115467578 115467968 LTR7 482 + 0 474 91874 86 1 51 87 8 40 33 1 2 6 0 1 168 chain 11524 chrX 155270560 + 115479443 115479633 THE1D 372 - 166 354 154199 12 8 6 106 10 0 7 13 23 34 chain 15482 chrX 155270560 + 115482763 115483094 THE1D 372 + 5 344 139956 6 0 5 34 9 0 9 2 7 28 95 102 148 chain 23692 chrX 155270560 + 115492156 115492529 THE1C 375 - 0 353 112073 158 53 31 7 0 2 85 6 6 64 chain 11489 chrX 155270560 + 115499365 115499487 L1PA4 6152 + 6029 6151 154336 122 chain 5843 chrX 155270560 + 115518926 115519002 MER5A1 166 + 85 161 186748 76 chain 6905 chrX 155270560 + 115523043 115523121 L1PA5 6144 + 6064 6142 178148 78 chain 8569 chrX 155270560 + 115532007 115532113 U6 107 - 0 107 167911 16 0 1 90 chain 117635 chrX 155270560 + 115541583 115543152 THE1B-int 1605 + 0 1600 31915 182 0 3 171 6 9 5 3 0 62 76 101 303 0 3 761 chain 36186 chrX 155270560 + 115555589 115556013 L1PA7 6471 + 6033 6458 74650 103 0 1 321 chain 52359 chrX 155270560 + 115604664 115605294 L1PA7 6471 - 2 627 57391 10 3 0 58 4 0 6 0 2 549 chain 116394 chrX 155270560 + 115611895 115613343 L1PA7 6471 + 5060 6468 32314 182 0 8 12 42 0 92 2 1 267 2 0 686 5 6 147 4 0 7 chain 19837 chrX 155270560 + 115644999 115645767 L1PB1 5432 - 45 453 127689 17 1 0 24 2 0 14 9 6 12 10 1 10 2 1 6 2 0 15 1 0 7 1 0 37 1 0 16 2 1 45 23 17 12 5 4 4 1 0 20 346 15 106 5 6 12 chain 540340 chrX 155270560 + 115645774 115651786 L1PA3long 6157 - 8 6157 2765 145 1 0 1090 0 1 862 0 1 3004 1 0 142 0 128 611 8 17 148 chain 39166 chrX 155270560 + 115656504 115657037 MLT2A2 560 - 0 560 70516 123 20 31 142 0 1 65 13 29 80 3 2 87 chain 3088 chrX 155270560 + 115657282 115657317 MER5A1 166 + 130 165 223145 35 chain 214939 chrX 155270560 + 115659701 115662173 L1PA4 6152 - 0 2479 18168 187 2 8 656 1 0 1197 0 3 421 1 0 7 chain 14042 chrX 155270560 + 115662182 115662334 L1PA4 6152 + 3503 3655 144414 152 chain 8474 chrX 155270560 + 115668657 115668828 L1MB2 1706 - 69 225 168431 26 1 0 10 47 33 87 chain 70632 chrX 155270560 + 115747690 115748573 L1P3 4156 + 3238 4139 48094 235 0 2 19 1 0 459 1 0 130 0 18 5 0 1 7 2 1 24 chain 54552 chrX 155270560 + 115750333 115750945 L1PA5 6144 + 5521 6135 55994 468 0 1 11 0 1 133 chain 9726 chrX 155270560 + 115758233 115758377 LTR5A 1029 + 0 148 161955 76 11 17 14 2 0 41 chain 22085 chrX 155270560 + 115758413 115758677 L1PA7 6471 + 6204 6468 119866 264 chain 55296 chrX 155270560 + 115766171 115766865 L1PA8 5853 - 1359 2055 55523 272 2 3 212 0 1 208 chain 97876 chrX 155270560 + 115766870 115768190 L1PA8 5853 + 4536 5853 37307 462 0 1 96 0 1 377 1 2 89 1 0 18 0 2 5 2 0 17 11 9 37 12 10 17 1 0 9 0 1 51 2 1 18 8 7 41 14 15 31 chain 18443 chrX 155270560 + 115781005 115781211 L1PA5 6144 + 5932 6138 131663 206 chain 248217 chrX 155270560 + 115783304 115786739 L1PB1 5432 - 332 3778 16352 97 22 15 152 3 4 22 4 8 95 0 2 10 2 3 65 3 0 114 3 5 117 1 2 363 0 1 92 0 3 192 0 3 584 8 0 8 5 13 48 4 8 5 3 0 5 0 3 123 0 4 58 0 1 30 14 12 284 17 14 42 0 1 43 3 0 6 4 13 4 1 0 6 6 0 322 9 8 436 chain 34873 chrX 155270560 + 115795999 115796379 L1PA4 6152 + 5771 6151 76376 380 chain 4798 chrX 155270560 + 115796830 115796886 HUERS-P2-int 2744 + 1243 1299 197384 56 chain 209636 chrX 155270560 + 115798117 115801238 MER61-int 3695 - 584 3695 18515 4 1 0 48 8 23 62 0 1 81 54 50 10 0 1 50 21 19 40 1 0 46 0 1 37 0 11 11 2 0 6 18 13 176 2 3 17 0 1 6 0 10 13 13 11 22 0 1 4 8 7 85 1 0 109 0 1 5 0 3 134 14 15 172 11 12 252 0 5 133 2 0 161 0 1 45 0 6 93 5 7 224 12 17 76 0 1 163 8 9 49 1 6 130 15 1 80 9 5 54 1 0 74 39 0 89 0 1 6 2 1 55 1 0 12 5 0 4 1 2 28 chain 77859 chrX 155270560 + 115801952 115802982 HUERS-P2-int 2744 + 1295 2308 44584 104 0 1 772 12 14 66 1 0 4 24 5 47 chain 30617 chrX 155270560 + 115806827 115807252 MLT2A1 477 + 0 404 83175 142 0 1 25 0 4 152 1 0 59 21 2 12 6 0 7 chain 78176 chrX 155270560 + 115815549 115816514 L1PA7 6471 + 5500 6470 44426 117 5 4 629 0 5 178 11 13 20 1 0 4 chain 170199 chrX 155270560 + 115847813 115851553 L1PA4 6152 + 2088 6151 22025 42 154 141 8 0 13 27 0 2 11 63 133 77 855 1001 56 111 114 38 0 1 4 1 0 97 36 37 47 308 334 40 0 2 6 95 166 143 0 1 774 0 1 747 chain 30595 chrX 155270560 + 115854291 115854692 LTR7 482 - 12 482 83205 174 1 31 40 0 1 109 8 46 69 chain 279525 chrX 155270560 + 115856620 115860263 HERVH-int 3825 - 0 3825 14659 332 0 4 122 37 247 367 1 0 453 0 1 63 0 2 139 4 9 76 0 4 177 13 11 241 5 0 144 11 1 225 0 1 428 1 0 18 3 4 38 15 107 31 60 0 10 1 0 35 1 0 50 2 0 9 58 3 93 16 17 29 2 1 333 chain 30142 chrX 155270560 + 115860275 115860680 LTR7 482 - 9 482 84340 178 1 32 14 2 0 24 0 1 109 8 46 69 chain 4290 chrX 155270560 + 115871365 115871885 L1P3 4156 - 17 226 70924 24 2 1 9 2 0 36 308 0 139 chain 28373 chrX 155270560 + 115871923 115872248 LTR17 781 - 455 781 91684 276 0 1 49 chain 242545 chrX 155270560 + 115872560 115875386 HERV17-int 4347 - 0 2879 16635 249 2 1 352 0 3 138 8 0 463 1 0 220 6 8 188 0 17 147 0 42 961 1 0 90 chain 17697 chrX 155270560 + 115875429 115875630 HERV17-int 4347 + 2329 2528 133710 75 2 0 124 chain 3341 chrX 155270560 + 115875671 115876076 L1P3 4156 - 226 615 70924 230 19 0 48 0 3 108 chain 28919 chrX 155270560 + 115878331 115878654 L1PA3long 6157 - 0 323 89380 323 chain 46939 chrX 155270560 + 115881258 115881815 L1PA5 6144 - 1 557 61270 145 1 0 120 2 1 43 0 1 246 chain 12319 chrX 155270560 + 115881815 115881970 L1PA5 6144 + 5433 5584 150942 112 4 0 39 chain 14898 chrX 155270560 + 115905186 115905385 MLT2A2 560 + 5 196 141638 122 7 0 53 1 0 16 chain 20952 chrX 155270560 + 115906206 115906482 MER41A 554 - 25 305 124097 56 0 5 41 2 1 177 chain 21828 chrX 155270560 + 115911812 115912062 AluYf4 310 + 58 309 120908 148 0 1 102 chain 201316 chrX 155270560 + 115918459 115922950 L1PB1 5432 + 1397 5419 19114 25 17 15 108 1538 1079 208 3 0 115 0 1 263 2 0 53 1 2 213 0 10 233 0 2 95 0 1 63 7 20 61 0 2 194 0 1 6 1 0 6 0 1 152 1 2 49 17 15 121 0 2 20 8 6 4 0 1 79 4 1 274 1 3 196 9 8 7 1 0 20 1 0 13 1 0 10 5 1 11 2 0 51 2 1 16 1 0 44 1 0 4 57 43 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 62282 chrX 155270560 + 115923004 115923748 L1P3 4156 - 821 1569 51761 234 0 4 510 chain 130472 chrX 155270560 + 115923749 115925317 L1PA7 6471 + 4883 6464 27970 617 0 2 119 1 7 72 1 4 517 4 5 32 0 1 205 chain 183265 chrX 155270560 + 115930751 115933286 L1PA8A 6298 - 11 2576 20654 94 6 10 120 1 5 94 1 0 40 6 1 52 1 10 267 27 25 85 1 0 32 0 15 416 4 0 40 4 0 47 1 0 346 6 8 48 2 0 103 4 0 43 13 12 143 0 27 100 9 11 21 4 5 104 0 1 77 1 0 5 0 6 6 18 3 4 1 0 4 0 1 134 chain 42188 chrX 155270560 + 115946415 115946895 LTR7 482 - 0 482 66409 49 12 14 419 chain 288264 chrX 155270560 + 115948150 115951739 HERVH-int 3825 - 0 3825 14145 487 8 218 33 0 5 228 0 1 828 0 10 81 1 16 202 8 35 900 0 3 12 0 2 7 0 1 30 1 0 6 6 7 15 80 0 26 2 22 10 6 36 24 1 0 10 1 0 30 46 40 11 2 0 438 0 2 49 chain 3039 chrX 155270560 + 115951193 115951228 HERVH-int 3825 - 3341 3376 224221 35 chain 39743 chrX 155270560 + 115951741 115952190 LTR7 482 - 0 482 69694 49 12 14 124 0 31 264 chain 24355 chrX 155270560 + 115953408 115953700 AluYf4 310 + 11 301 108345 117 2 0 173 chain 33586 chrX 155270560 + 115954451 115954976 HERVL-int 5654 + 0 512 78266 337 76 64 107 1 0 4 chain 13944 chrX 155270560 + 115970890 115971044 L1PA3long 6157 - 2 156 144777 154 chain 51681 chrX 155270560 + 115984149 115984806 L1PA7 6471 - 14 671 57834 148 1 2 471 2 1 35 chain 8394 chrX 155270560 + 115984806 115984902 U6 107 - 0 96 168885 96 chain 18657 chrX 155270560 + 116033347 116033716 THE1B 368 - 4 368 131061 71 1 0 81 40 35 42 28 29 13 14 0 8 0 15 21 1 2 34 2 0 13 chain 153454 chrX 155270560 + 116051117 116052872 L1PA5 6144 - 6 1774 24166 153 0 1 686 0 5 360 0 7 556 chain 44027 chrX 155270560 + 116052872 116053546 MER11A 1151 + 502 1151 64170 36 0 1 29 0 1 106 4 7 128 0 26 26 43 0 24 22 4 29 1 2 45 0 1 132 1 0 6 1 6 25 1 0 15 chain 48232 chrX 155270560 + 116064118 116064820 LTR30 714 - 0 712 60290 23 1 0 28 8 12 12 7 0 6 1 3 172 4 15 167 8 7 13 1 6 9 8 5 234 chain 537460 chrX 155270560 + 116075280 116081254 L1PA2 6032 - 33 6018 3244 127 5 6 1014 0 4 981 1 0 1306 3 0 838 0 4 1008 1 8 447 1 0 242 chain 65704 chrX 155270560 + 116096114 116097005 L1P3 4156 - 3268 4144 50246 381 5 6 44 8 9 47 26 10 71 1 0 123 1 0 25 0 1 159 chain 539131 chrX 155270560 + 116098802 116104803 L1PA2 6032 - 0 6032 2964 17 0 6 740 1 0 207 4 14 818 0 4 354 0 3 506 10 12 216 0 4 570 3 0 1439 2 1 417 0 7 441 1 0 183 1 2 71 chain 5360 chrX 155270560 + 116112420 116112499 MADE1 96 - 0 95 191431 37 3 19 39 chain 38231 chrX 155270560 + 116113394 116113852 L1P3 4156 - 963 1419 71801 93 4 0 276 0 2 85 chain 139765 chrX 155270560 + 116113852 116115586 L1PA7 6471 + 4626 6467 26176 201 4 0 795 2 0 88 1 0 93 1 5 30 3 6 24 0 4 307 6 109 179 chain 19327 chrX 155270560 + 116129238 116129613 THE1B 368 - 0 368 129157 46 11 12 4 1 0 61 10 9 6 1 0 16 1 5 9 34 24 41 17 15 6 0 3 111 chain 28775 chrX 155270560 + 116177130 116177436 AluYa5 310 - 4 310 89998 306 chain 123752 chrX 155270560 + 116195214 116196692 L1PA7 6471 - 1 1479 29790 8 2 0 203 0 1 121 0 1 519 1 0 120 0 1 26 1 0 450 0 1 27 chain 16738 chrX 155270560 + 116208067 116208250 THE1C-int 1605 - 1406 1589 136291 183 chain 168250 chrX 155270560 + 116215017 116217555 L1PA10 4194 - 1276 3995 22256 205 17 134 452 4 0 39 4 5 515 1 2 37 31 151 70 0 1 37 8 10 744 58 48 38 1 2 23 17 13 12 2 1 5 1 0 11 1 0 7 1 0 20 2 0 14 56 31 4 1 0 16 2 0 21 11 9 9 2 0 10 10 6 9 2 0 8 chain 9092 chrX 155270560 + 116237861 116237977 L1MA8 2339 + 1357 1534 165108 106 0 61 10 chain 3052 chrX 155270560 + 116246565 116246600 L1MA8 2339 + 691 726 223955 35 chain 28273 chrX 155270560 + 116253962 116254316 THE1A 353 - 0 353 92028 243 1 0 110 chain 27309 chrX 155270560 + 116255880 116256233 THE1A 353 - 0 353 95247 48 0 1 194 5 4 106 chain 5491 chrX 155270560 + 116271064 116271135 L1MA4 2864 + 2045 2116 190125 71 chain 223112 chrX 155270560 + 116277602 116280357 L1PA7 6471 - 254 3037 17704 85 0 1 462 1 2 46 2 0 183 0 15 99 0 1 374 2 0 473 0 4 52 0 1 51 1 2 158 0 1 244 0 1 126 0 1 282 0 4 100 1 2 13 chain 4577 chrX 155270560 + 116280357 116281201 L1PA7 6471 + 5279 6127 47172 24 2 1 321 1 5 416 0 1 80 chain 255364 chrX 155270560 + 116287205 116290593 L1P2 5180 + 1560 4942 15965 392 2 1 422 7 6 510 1 0 35 6 7 39 24 26 211 1 2 60 0 2 14 5 6 222 17 0 175 15 17 792 0 4 209 1 2 51 22 0 8 0 22 147 chain 35631 chrX 155270560 + 116291797 116292194 L1PA2 6032 - 0 397 75366 397 chain 1844 chrX 155270560 + 116293421 116293761 L1PA7 6471 + 6127 6466 47172 92 2 0 238 0 1 8 chain 19536 chrX 155270560 + 116297844 116298205 THE1D 372 + 0 349 128552 51 25 13 68 50 55 5 3 0 92 1 0 56 1 0 9 chain 330945 chrX 155270560 + 116300066 116303943 L1PA4 6152 + 2272 6146 12167 52 1 0 99 1 4 568 17 9 205 2 1 727 1 2 1362 3 5 731 1 2 107 chain 108517 chrX 155270560 + 116313335 116314523 L1PA3long 6157 - 1517 2705 34385 1188 chain 138530 chrX 155270560 + 116314523 116316041 L1PA3long 6157 + 4639 6157 26390 1518 chain 27839 chrX 155270560 + 116324271 116324579 L1PA4 6152 + 5694 6003 93562 123 0 1 185 chain 13400 chrX 155270560 + 116324580 116324729 L1PA4 6152 + 6003 6152 146715 149 chain 27855 chrX 155270560 + 116326758 116327234 MLT2A2 560 - 0 560 93511 38 48 20 14 25 30 45 2 111 124 11 9 169 chain 20430 chrX 155270560 + 116331583 116331883 THE1B 368 + 0 304 125819 169 1 0 21 18 25 17 1 0 7 2 1 64 chain 4838 chrX 155270560 + 116342691 116342783 L1MA5 2750 + 2570 2661 196899 41 21 21 14 1 0 15 chain 73810 chrX 155270560 + 116363708 116364688 THE1B-int 1605 - 5 1578 46610 87 0 562 267 10 13 209 0 1 5 1 26 192 1 0 37 10 13 161 chain 27589 chrX 155270560 + 116365725 116366019 AluYa5 310 - 16 310 94384 294 chain 14812 chrX 155270560 + 116381849 116382117 LTR12C 1709 + 650 876 141907 33 41 0 66 2 17 7 15 0 64 1 0 39 chain 2455 chrX 155270560 + 116381890 116381923 LTR12C 1709 + 891 1168 194547 24 0 244 9 chain 25186 chrX 155270560 + 116382654 116382975 PABL_A 660 + 338 660 103823 150 0 1 171 chain 336483 chrX 155270560 + 116386252 116390428 L1PA7 6471 - 1 4195 11985 4 1 0 79 1 0 504 0 1 253 0 6 28 0 3 637 1 0 196 2 1 733 39 28 161 1 2 43 0 1 207 0 12 18 0 4 26 1 0 133 1 0 269 1 2 425 0 1 25 0 4 31 0 1 356 chain 550485 chrX 155270560 + 116394661 116400773 L1PA3long 6157 + 23 6149 1376 544 0 4 478 0 2 138 1 4 3477 0 1 633 0 4 841 chain 514060 chrX 155270560 + 116402032 116408456 L1PA7 6471 + 0 6468 5768 408 1 2 137 0 19 149 11 12 158 0 11 19 29 1 584 0 1 245 7 8 6 1 0 415 1 0 173 1 2 62 1 0 255 0 30 422 1 2 479 0 1 1947 0 1 72 1 0 82 1 0 424 1 12 167 7 14 84 10 6 51 5 0 7 chain 11872 chrX 155270560 + 116410084 116410396 L1MA7 2200 + 1822 2105 152731 7 1 0 28 10 14 70 80 61 35 24 13 39 2 0 16 chain 23095 chrX 155270560 + 116413285 116413538 LTR7Y 441 + 0 253 115164 253 chain 291027 chrX 155270560 + 116413543 116417142 HERVH-int 3825 + 0 3825 13958 488 0 1 43 127 0 38 1 0 10 1 0 4 57 143 36 0 2 13 0 3 671 0 2 231 4 31 299 0 10 1045 9 11 38 0 210 71 11 18 174 3 8 225 chain 40689 chrX 155270560 + 116418401 116418842 LTR7Y 441 + 0 441 68313 441 chain 28800 chrX 155270560 + 116420711 116421030 L1PA4 6152 + 5712 6030 89899 100 2 1 217 chain 8652 chrX 155270560 + 116421030 116421124 L1PA4 6152 + 6044 6138 167464 94 chain 4146 chrX 155270560 + 116425917 116425965 MADE1 96 - 1 49 205289 48 chain 75409 chrX 155270560 + 116440393 116441339 L1PA7 6471 - 4 2078 45817 59 0 12 109 0 3 7 1 2 579 0 57 22 1 0 64 0 1056 104 chain 112865 chrX 155270560 + 116441341 116442851 L1P3 4156 + 2645 4139 33410 448 0 4 397 1 0 31 0 1 259 60 63 157 44 23 66 1 2 11 9 6 26 chain 53463 chrX 155270560 + 116446224 116446924 L1PB 1623 - 397 1108 56713 169 24 35 507 chain 13191 chrX 155270560 + 116446924 116447189 L1PB1 5432 + 5182 5424 147507 38 19 17 44 1 0 15 4 1 14 8 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 29192 chrX 155270560 + 116454361 116454669 AluYk12 309 + 0 308 88087 308 chain 21245 chrX 155270560 + 116455914 116456266 THE1C 375 + 0 354 123038 100 49 53 27 6 5 165 1 0 4 chain 63943 chrX 155270560 + 116456281 116457195 THE1C-int 1605 + 0 1605 51032 16 1 2 35 0 1 48 7 0 23 4 58 261 36 676 166 23 25 294 chain 10206 chrX 155270560 + 116457571 116457703 L1MA3 4352 - 1023 1155 159593 132 chain 26237 chrX 155270560 + 116467520 116467952 MER57A1 433 - 3 424 99069 22 1 0 4 1 0 7 1 2 73 27 25 15 19 14 145 9 5 53 0 1 55 chain 6277 chrX 155270560 + 116481772 116481839 L1PA4 6152 + 6079 6146 182960 67 chain 29458 chrX 155270560 + 116491809 116492119 AluYa5 310 - 0 310 86804 310 chain 25665 chrX 155270560 + 116494306 116494663 THE1B 368 + 0 368 101426 15 2 0 25 4 18 24 4 5 82 1 0 124 1 0 75 chain 116127 chrX 155270560 + 116494690 116496207 THE1B-int 1605 + 27 1600 32406 65 0 2 336 1 26 282 5 6 25 16 28 480 3 19 304 chain 30271 chrX 155270560 + 116514161 116514506 L1PA5 6144 + 5795 6140 84013 345 chain 135297 chrX 155270560 + 116528461 116530052 LTR12C 1709 + 0 1709 26956 436 0 1 282 0 118 275 1 0 4 4 2 17 4 0 89 0 4 16 3 5 460 chain 149924 chrX 155270560 + 116549916 116551804 L1PA7 6471 - 4 1957 24620 180 0 1 153 1 10 329 12 13 163 0 4 247 1 0 4 0 1 343 0 1 63 1 0 209 6 7 70 0 4 16 4 5 23 3 1 51 0 46 9 chain 30834 chrX 155270560 + 116551808 116552261 LTR7B 505 + 0 495 82800 108 0 10 25 0 1 31 0 38 12 34 27 26 0 2 82 1 0 79 14 13 41 chain 26961 chrX 155270560 + 116552346 116552716 HERVH-int 3825 + 78 446 96407 255 1 0 53 40 39 21 chain 66327 chrX 155270560 + 116554982 116555833 HERVH-int 3825 + 2970 3823 49936 260 28 30 42 1 0 79 0 1 441 chain 3789 chrX 155270560 + 116555956 116555997 LTR7B 505 + 454 495 210530 41 chain 32622 chrX 155270560 + 116556399 116556800 L1P3 4156 - 20 418 79812 20 3 2 7 2 0 369 chain 66292 chrX 155270560 + 116556800 116557633 HERVL-int 5654 + 4815 5654 49957 376 0 8 26 10 8 421 chain 6998 chrX 155270560 + 116566940 116567028 L1PA7 6471 - 850 942 177469 20 0 4 68 chain 47780 chrX 155270560 + 116567028 116567586 L1PA7 6471 - 943 1501 60632 558 chain 3836 chrX 155270560 + 116567586 116567645 L1PA7 6471 + 5639 5698 208824 44 1 0 4 1 2 9 chain 63720 chrX 155270560 + 116567645 116568415 L1PA7 6471 + 5700 6466 51134 301 6 4 454 2 0 7 chain 496953 chrX 155270560 + 116577117 116583537 L1PA7 6471 + 5 6469 7012 234 15 16 152 34 35 95 0 1 39 28 26 16 0 1 40 0 2 47 33 38 505 16 35 110 0 3 336 18 17 219 0 1 667 0 1 218 1 0 133 1 6 33 14 5 448 1 2 4 1 0 32 1 0 6 0 1 16 1 5 61 0 1 153 5 6 202 0 1 265 21 22 407 0 4 152 0 1 124 1 0 89 4 3 148 2 0 5 1 3 299 0 1 64 0 1 53 1 4 92 0 1 291 0 2 5 3 1 458 chain 7792 chrX 155270560 + 116592014 116592173 L1M3e 1964 + 50 195 172345 36 38 26 38 1 0 7 1 0 38 chain 399849 chrX 155270560 + 116596176 116601480 L1PA5 6144 - 12 5306 10099 360 5 4 501 0 1 45 1 0 189 6 5 85 0 22 8 29 7 252 5 15 357 0 2 241 0 1 50 1 0 112 4 5 172 13 11 4 0 1 436 0 3 67 1 0 329 1 0 543 2 0 109 0 2 272 21 0 28 0 3 232 1 0 248 13 17 97 0 1 126 13 4 120 1 0 4 13 14 60 1 0 5 13 8 7 0 4 16 30 34 55 chain 5938 chrX 155270560 + 116605989 116606074 L1MB8 1703 + 1475 1561 185795 26 3 4 56 chain 1668 chrX 155270560 + 116610100 116610332 L1MA1 4479 - 337 562 59610 31 3 1 25 8 7 121 1 0 5 2 0 5 1 0 30 chain 168835 chrX 155270560 + 116610779 116612901 L1PB1 5432 - 329 2428 22183 299 2 0 96 1 0 85 5 7 74 0 1 342 0 1 461 40 15 12 0 1 705 chain 5328 chrX 155270560 + 116616199 116616940 L1MA1 4479 - 562 2505 59610 58 1 0 13 9 7 13 8 7 64 1 0 16 2 0 16 13 1194 52 2 17 252 0 1 27 0 4 14 4 0 56 17 20 37 9 8 16 7 17 34 chain 15262 chrX 155270560 + 116629471 116629646 L1PA7 6471 + 6132 6307 140594 175 chain 13225 chrX 155270560 + 116629658 116629809 L1PA7 6471 + 6319 6470 147369 151 chain 188183 chrX 155270560 + 116637919 116640272 L1PA5 6144 + 3985 6140 20218 560 0 6 874 220 15 581 0 1 118 chain 14639 chrX 155270560 + 116666988 116667152 L1PA4 6152 + 5979 6143 142457 164 chain 64264 chrX 155270560 + 116667715 116668447 L1PA4 6152 + 5415 6152 50892 726 0 5 6 chain 18484 chrX 155270560 + 116668491 116668709 L1PA5 6144 + 5761 5981 131548 50 0 3 71 1 0 96 chain 26606 chrX 155270560 + 116670509 116670877 THE1C 375 + 0 363 97635 21 1 0 206 8 10 6 6 0 120 chain 25193 chrX 155270560 + 116682018 116682299 L1PA4 6152 - 1 282 103779 281 chain 51539 chrX 155270560 + 116688274 116688901 L1PA7 6471 + 5829 6457 57937 548 20 21 59 chain 15998 chrX 155270560 + 116689209 116689426 L1PA4 6152 - 0 214 138351 6 3 0 144 0 5 8 18 13 38 chain 534064 chrX 155270560 + 116689654 116695749 L1PA4 6152 + 0 6140 3699 100 1 0 25 2 16 532 0 4 745 0 1 11 1 0 136 1 4 1167 1 0 43 3 1 321 1 2 428 0 12 830 1 0 80 0 13 1386 0 1 63 0 2 217 chain 235829 chrX 155270560 + 116697999 116702022 L1PA7 6471 - 1 2933 16988 145 21 21 82 0 1 21 1 0 110 0 1 328 0 1 139 2 1 108 1088 0 103 0 1 200 1 0 257 1 0 552 14 7 133 1 2 606 0 3 110 chain 84864 chrX 155270560 + 116698962 116700044 MER11A 1151 - 0 1151 41566 66 1 0 78 12 13 91 1 57 14 0 1 11 0 1 166 1 0 264 0 1 85 4 15 112 8 0 88 1 9 79 chain 278772 chrX 155270560 + 116724197 116728027 L1PA10 4194 + 250 4150 14705 21 2 0 15 1 0 7 46 20 22 2 0 15 4 3 10 8 6 11 1 0 6 3 0 9 7 0 88 12 1 223 0 1 138 17 15 823 3 1 75 1 0 252 0 4 599 1 2 5 0 1 41 0 4 8 7 11 130 0 117 228 6 7 164 0 2 48 0 1 230 0 1 69 1 0 38 15 17 204 1 0 8 2 1 126 1 0 4 1 0 29 8 5 34 chain 189156 chrX 155270560 + 116728739 116730902 L1P1 4361 - 621 2823 20131 210 7 20 229 8 9 75 1 0 341 2 0 474 0 4 5 0 1 756 0 23 55 chain 8298 chrX 155270560 + 116730902 116730993 L1PA4 6152 + 5208 5299 169408 91 chain 75081 chrX 155270560 + 116730994 116731840 L1PA4 6152 + 5301 6152 45978 840 0 5 6 chain 15755 chrX 155270560 + 116735001 116735201 THE1B 368 - 0 199 139094 75 1 0 124 chain 36350 chrX 155270560 + 116735218 116735701 L1PA8 5853 - 0 625 74431 85 18 175 29 1 0 33 15 0 116 0 1 186 chain 7426 chrX 155270560 + 116741979 116742071 L1PA6 6164 + 6067 6159 174605 92 chain 519148 chrX 155270560 + 116750674 116757513 L1PA7 6471 - 2 6469 5247 11 3 6 299 0 1 532 1 4 375 0 1 255 0 1 27 0 2 40 32 0 126 1 2 107 0 2 99 0 2 6 2 0 325 7 9 597 0 1 142 2 1 652 334 0 67 4 1 137 29 4 132 0 2 16 1 0 208 0 8 125 1 2 379 1 4 66 6 5 314 1 0 860 1 0 98 8 10 18 9 3 253 0 1 4 1 0 125 chain 17398 chrX 155270560 + 116767807 116768007 L1PA5 6144 + 5937 6138 134516 57 0 1 143 chain 68883 chrX 155270560 + 116785020 116785891 HERVL-int 5654 + 4762 5654 48861 367 6 7 5 1 0 75 1 16 60 0 1 87 0 1 31 0 1 170 0 3 68 chain 4598 chrX 155270560 + 116792140 116792191 L1MB3 1562 + 1369 1420 199650 51 chain 152001 chrX 155270560 + 116794914 116796693 L1PA6 6164 + 4389 6162 24336 924 13 11 679 7 8 6 1 0 139 4 0 6 chain 466950 chrX 155270560 + 116799550 116806299 L1PA8A 6298 - 9 6264 8152 96 14 8 183 0 1 358 0 19 50 0 1 29 5 1 53 2 1 80 8 9 583 1 3 95 2 0 211 2 17 37 0 3 572 0 1 175 252 0 254 0 3 174 0 1 51 0 1 489 0 58 36 5 7 115 0 1 5 2 0 460 3 4 4 1 0 680 306 0 15 0 19 59 0 4 118 1 0 11 3 0 21 7 11 70 2 0 239 9 13 54 5 0 128 8 12 126 0 1 24 1 0 3 1 0 4 1 0 6 1 0 14 2 0 78 11 5 11 7 6 42 1 0 9 4 0 13 47 40 17 13 10 7 1 0 12 2 1 9 1 0 14 48 36 19 32 21 18 1 0 6 chain 532348 chrX 155270560 + 116861896 116867700 L1PA2 6032 - 3 6020 3926 1490 0 2 1533 0 1 14 0 208 2066 1 0 397 0 1 4 0 2 299 chain 554558 chrX 155270560 + 116891142 116897286 L1PA3long 6157 - 0 6152 877 148 0 1 4 1 0 902 1 0 292 0 1 1793 0 1 325 1 0 795 3 4 430 0 4 641 0 3 808 chain 105639 chrX 155270560 + 116902848 116904348 LTR12C 1709 + 0 1709 35343 168 0 1 4 1 0 83 3 29 10 29 15 26 5 48 80 3 1 8 18 0 230 0 159 209 0 47 106 35 4 54 2 1 16 6 7 313 7 6 84 chain 171804 chrX 155270560 + 116911508 116913397 L1PA3long 6157 - 5 1892 21844 291 1 0 1226 1 0 370 chain 145675 chrX 155270560 + 116913397 116915020 L1PA3long 6157 + 2630 4252 25215 540 2 1 1081 chain 37336 chrX 155270560 + 116932288 116932756 L1PA7 6471 - 979 1441 72611 314 3 0 30 15 12 106 chain 79686 chrX 155270560 + 116932756 116933725 L1PA7 6471 + 5489 6465 43743 135 2 0 79 3 0 510 0 7 93 7 14 132 2 0 6 chain 213529 chrX 155270560 + 116942698 116945664 L1PB1 5432 + 12 5236 18252 7 1 0 80 10 12 203 18 19 189 5 8 22 0 1 7 2 1 44 0 3 158 1 0 9 7 10 96 1 0 7 0 1 250 4 16 88 5 9 38 0 2229 130 0 1 82 2 0 150 0 1 215 0 1 335 0 1 40 0 4 145 1 2 168 8 0 8 1 9 238 6 11 6 0 3 5 0 2 27 6 2 9 1 0 24 1 0 9 1 0 4 27 21 48 2 1 15 chain 28446 chrX 155270560 + 116954979 116955287 AluYa5 310 - 2 310 91391 308 chain 54744 chrX 155270560 + 116955308 116955940 L1PA4 6152 - 9 648 55873 139 0 1 356 6 12 131 chain 81209 chrX 155270560 + 116955940 116956861 L1PA4 6152 + 4565 5491 43082 238 0 1 500 0 4 183 chain 548229 chrX 155270560 + 116961412 116967549 L1PA3long 6157 - 0 6152 1675 155 1 0 415 0 1 944 0 1 307 0 10 1152 0 1 368 0 1 1504 0 1 468 1 2 822 chain 33747 chrX 155270560 + 116975376 116975742 L1PA2 6032 - 2 368 78023 366 chain 20398 chrX 155270560 + 116978357 116978598 L1PA5 6144 + 5900 6139 125900 72 2 0 167 chain 59182 chrX 155270560 + 116989450 116990124 L1PA5 6144 + 5462 6135 53291 224 1 0 449 chain 556991 chrX 155270560 + 117007959 117013986 L1PA2 6032 - 0 6032 609 1236 0 1 4323 0 4 468 chain 180957 chrX 155270560 + 117015515 117018281 L1MA2 4263 + 1369 4110 20904 52 0 5 22 0 4 82 18 24 83 0 2 32 98 99 15 7 0 95 1 0 81 6 5 114 3 0 144 0 1 10 0 1 299 1 0 105 2 0 5 5 6 42 5 0 120 13 14 71 0 2 68 4 5 197 2 0 243 20 19 34 13 6 108 16 11 67 1 0 134 17 14 146 34 31 71 7 0 46 1 0 6 chain 16348 chrX 155270560 + 117042217 117042405 L1PA7 6471 - 10 198 137346 188 chain 30893 chrX 155270560 + 117045396 117045766 L1PA7 6471 - 32 403 82690 5 0 2 31 8 7 326 chain 8470 chrX 155270560 + 117048210 117048308 HY3 101 - 3 101 168456 98 chain 20865 chrX 155270560 + 117066671 117067137 L1MA6 2487 - 289 744 124409 53 47 48 26 8 5 63 1 0 6 71 70 35 5 0 34 11 6 20 0 3 86 chain 438838 chrX 155270560 + 117072905 117078207 L1PA7 6471 - 1 6468 9088 337 1 2 156 1 0 31 0 1 240 1 0 82 1 0 666 1 0 784 0 106 68 0 2 345 1 3 70 0 1 214 0 2 17 2 1 4 0 1 235 1 5 573 0 4 953 5 6 323 1 0 21 0 4 25 5 6 44 6 1046 70 0 1 18 chain 156337 chrX 155270560 + 117085799 117087526 L1PA3long 6157 + 4428 6157 23819 1469 0 1 118 0 1 140 chain 32764 chrX 155270560 + 117097449 117097795 L1HS 6032 - 420 766 79588 346 chain 35094 chrX 155270560 + 117097795 117098168 L1HS 6032 + 5659 6032 76055 373 chain 74706 chrX 155270560 + 117098566 117099422 L1PA4 6152 - 9 875 46155 6 0 6 829 0 4 21 chain 152115 chrX 155270560 + 117099422 117101148 L1PA4 6152 + 3543 5265 24323 722 17 12 72 0 1 915 chain 7939 chrX 155270560 + 117129408 117129498 L1PA8 5853 - 0 90 171387 90 chain 49103 chrX 155270560 + 117133098 117133654 L1PA5 6144 + 5576 6132 59667 556 chain 84909 chrX 155270560 + 117143010 117143921 L1PA2 6032 - 799 1710 41548 911 chain 73198 chrX 155270560 + 117143921 117144716 L1PA2 6032 + 5236 6030 46649 22 0 1 760 2 0 11 chain 104348 chrX 155270560 + 117153219 117154366 L1PA3long 6157 - 763 1910 35655 1147 chain 66962 chrX 155270560 + 117154367 117155114 L1PA3long 6157 + 5409 6157 49665 414 0 1 333 chain 81182 chrX 155270560 + 117155204 117156130 L1PA5 6144 - 0 935 43097 470 0 2 203 0 2 154 0 1 14 1 5 84 chain 539571 chrX 155270560 + 117165692 117171717 L1PA3long 6157 + 0 6157 2888 127 1 15 12 14 1 223 0 1 397 0 128 635 2 1 276 0 2 2992 0 1 1346 chain 48898 chrX 155270560 + 117187067 117187614 L1PA4 6152 + 5605 6152 59808 547 chain 72600 chrX 155270560 + 117204726 117205531 L1PA3long 6157 - 5 809 47085 762 1 0 42 chain 102381 chrX 155270560 + 117205531 117206645 L1PA3long 6157 + 4234 5348 36167 1114 chain 29186 chrX 155270560 + 117207121 117207473 THE1B 368 - 0 368 88117 308 0 16 44 chain 5194 chrX 155270560 + 117209937 117210001 MER41B 635 - 88 153 193111 38 0 1 26 chain 105101 chrX 155270560 + 117224063 117225243 L1PA4 6152 + 4952 6143 35475 82 1 0 69 0 15 180 3 0 845 chain 14767 chrX 155270560 + 117225766 117226161 L1PB1 5432 + 5087 5422 142039 16 23 11 24 1 0 6 1 0 14 43 22 35 3 0 5 6 5 12 1 0 45 39 27 14 2 0 9 1 0 14 3 1 23 1 0 22 1 0 12 1 0 18 chain 459106 chrX 155270560 + 117227850 117233082 L1PA4 6152 + 0 6151 8440 96 0 996 119 16 3 1742 37 0 675 0 1 1096 0 1 553 0 1 18 1 5 699 34 0 146 chain 20085 chrX 155270560 + 117269080 117269333 AluSg7 307 - 44 297 126873 77 1 0 54 0 1 121 chain 28644 chrX 155270560 + 117298381 117298710 L1PA7 6471 + 6132 6464 90541 127 0 3 202 chain 22626 chrX 155270560 + 117327817 117328107 AluSp 311 + 5 297 117445 135 1 2 64 1 2 89 chain 539766 chrX 155270560 + 117375669 117381823 L1PA4 6152 + 6 6152 2855 1086 0 5 1263 1 0 387 31 0 772 0 1 66 0 9 934 0 1 346 6 5 419 0 1 227 0 2 287 0 1 323 0 5 6 chain 27395 chrX 155270560 + 117386216 117386530 AluY 311 + 0 311 94986 17 3 0 294 chain 3262 chrX 155270560 + 117396378 117396418 L1MC1 2226 + 1353 1393 219748 40 chain 102166 chrX 155270560 + 117398697 117400472 L1M1 2793 + 492 2158 36219 9 1 0 7 18 14 13 10 8 8 2 0 11 3 0 8 1 0 9 1 0 11 3 0 8 37 21 16 83 26 39 45 32 7 4 0 26 4 1 6 2 0 30 1 0 26 19 16 46 6 4 8 1 0 101 1 0 176 1 0 71 4 0 19 7 0 48 0 1 246 0 4 56 5 7 39 0 1 18 11 9 146 0 10 44 7 8 33 0 7 160 2 1 51 chain 12161 chrX 155270560 + 117402428 117402708 L1MC1 2226 + 1780 2047 151568 60 27 25 22 51 45 44 21 16 55 chain 24650 chrX 155270560 + 117403331 117403608 L1PA4 6152 + 5866 6143 106720 277 chain 16638 chrX 155270560 + 117412218 117412486 LTR12C 1709 - 0 232 136561 160 69 33 39 chain 222100 chrX 155270560 + 117412542 117415451 HERV9-int 5642 - 72 5642 17753 45 1 0 30 2 0 35 5 3 228 1 0 404 0 2798 445 1 0 304 0 2 166 1 0 3 83 0 118 0 85 19 71 0 5 18 0 60 0 2 23 1 0 778 45 0 17 chain 5771 chrX 155270560 + 117414217 117414279 HERV9-int 5642 - 4536 4598 187435 62 chain 7474 chrX 155270560 + 117415487 117415569 LTR12C 1709 - 8 90 174316 82 chain 134910 chrX 155270560 + 117415603 117417232 LTR12C 1709 - 0 1709 27027 289 4 6 186 0 4 104 14 11 252 0 40 503 1 0 4 12 51 151 5 4 104 chain 99055 chrX 155270560 + 117422111 117423188 L1PA3long 6157 + 5065 6142 37013 1077 chain 29483 chrX 155270560 + 117427036 117427370 LTR14A 344 - 0 344 86696 75 0 2 98 0 8 161 chain 69621 chrX 155270560 + 117427777 117428823 LTR12D 1347 - 0 1347 48564 246 0 97 211 0 1 57 1 233 169 191 162 171 chain 132048 chrX 155270560 + 117432458 117434148 HERVK14-int 1672 - 7 1667 27625 6 1 0 140 1 0 9 2 0 31 1 0 56 8 7 26 1 2 4 1 0 72 6 5 202 1 0 33 2 0 8 1 0 3 1 0 79 1 0 163 1 0 117 0 1 88 1 0 46 2 1 90 14 0 136 2 1 33 1 0 77 0 4 137 1 0 47 13 11 25 chain 31314 chrX 155270560 + 117434355 117434699 LTR14A 344 - 0 344 81967 344 chain 28478 chrX 155270560 + 117438023 117438415 THE1B 368 - 0 368 91275 49 0 1 118 4 0 27 21 0 173 chain 129071 chrX 155270560 + 117438420 117439994 THE1B-int 1605 - 5 1605 28299 660 1 0 484 1 26 413 0 2 15 chain 27032 chrX 155270560 + 117441825 117442197 LOR1b 457 - 0 393 96174 69 1 4 110 1 0 30 13 31 69 0 1 79 chain 14036 chrX 155270560 + 117472232 117472398 L1PA5 6144 - 0 174 144433 37 0 9 108 1 0 20 chain 6101 chrX 155270560 + 117488582 117488652 L1PA7 6471 - 3 73 184397 70 chain 7113 chrX 155270560 + 117496791 117496890 MER53 195 - 41 195 176661 15 0 55 84 chain 20825 chrX 155270560 + 117507914 117508154 L1PA7 6471 - 12 252 124520 240 chain 6738 chrX 155270560 + 117529366 117529464 L1MB3 1562 + 1458 1555 179411 65 5 4 28 chain 114027 chrX 155270560 + 117534633 117535862 L1PA2 6032 - 2 1231 33090 1229 chain 409743 chrX 155270560 + 117546694 117552589 L1PB1 5432 - 8 5413 9809 4 1 0 16 1 0 9 0 3 14 0 11 21 61 45 21 1 0 43 1 0 16 2 1 53 2 0 8 17 12 9 1 0 24 13 13 288 0 1 4 2 5 75 0 1 47 0 2 44 4 6 50 13 9 112 0 6 245 2 0 139 0 5 36 0 1 33 0 2 83 42 0 5 163 0 171 0 3 139 0 2 84 2 1 238 0 1 285 2 0 136 302 0 348 2 0 153 3 1 363 3 1 370 0 5 22 0 11 115 14 21 31 1 0 4 15 6 213 0 1 363 1 2 210 3 1 200 1 0 77 0 6 299 chain 47197 chrX 155270560 + 117604467 117605748 LTR12 884 + 0 873 61049 24 1 0 29 0 2 22 91 0 146 518 0 120 42 1 32 2 0 131 0 7 61 5 241 57 chain 1854 chrX 155270560 + 117604569 117604634 LTR12 884 + 78 143 107199 65 chain 2012 chrX 155270560 + 117604810 117604851 LTR12 884 + 344 382 238078 21 4 3 10 2 0 4 chain 10747 chrX 155270560 + 117604851 117605026 LTR12 884 + 55 189 157214 120 41 0 14 chain 3425 chrX 155270560 + 117604971 117605012 LTR12 884 + 68 109 191569 41 chain 2082 chrX 155270560 + 117605059 117605132 LTR12 884 + 289 362 107199 73 chain 9250 chrX 155270560 + 117605155 117605272 LTR12 884 + 55 172 164305 88 5 5 24 chain 2580 chrX 155270560 + 117605430 117605460 LTR12 884 + 289 319 136874 30 chain 5071 chrX 155270560 + 117635483 117635542 MER3 215 - 102 161 194403 59 chain 5318 chrX 155270560 + 117703374 117703468 HY1 111 - 5 101 191831 42 21 23 31 chain 25050 chrX 155270560 + 117714291 117714579 AluSp 311 - 24 311 104543 155 1 0 132 chain 67804 chrX 155270560 + 117716576 117717389 L1PA7 6471 + 5643 6457 49319 252 9 10 172 0 1 236 1 0 143 chain 14540 chrX 155270560 + 117717632 117717882 MER2 342 - 1 255 142757 55 37 37 136 9 13 13 chain 73301 chrX 155270560 + 117725596 117726408 L1PA4 6152 - 0 812 46884 812 chain 27400 chrX 155270560 + 117727412 117727764 THE1A 353 - 0 353 94969 71 1 0 61 0 4 15 1 0 91 1 0 111 chain 2643 chrX 155270560 + 117782202 117782260 MADE1 96 - 12 89 231115 23 18 37 17 chain 6910 chrX 155270560 + 117791380 117791460 L1PA8 5853 - 0 80 178114 80 chain 25347 chrX 155270560 + 117806406 117806697 AluYk4 311 - 23 311 102975 156 3 0 132 chain 15651 chrX 155270560 + 117809438 117809651 L1PA8A 6298 + 6075 6291 139430 11 0 7 6 7 0 12 0 2 54 0 1 123 chain 11714 chrX 155270560 + 117846616 117847163 MER50 708 - 475 708 153408 66 0 4 43 386 68 52 chain 5012 chrX 155270560 + 117847567 117847636 L1MB8 1703 - 149 220 194994 28 1 3 40 chain 138123 chrX 155270560 + 117849793 117851467 LTR12C 1709 - 0 1709 26466 481 0 4 106 4 2 4 1 0 59 2 0 44 1 0 137 0 40 533 30 27 272 chain 42994 chrX 155270560 + 117866378 117866863 L1PA5 6144 - 9 494 65421 28 0 1 215 1 0 241 chain 3376 chrX 155270560 + 117893036 117893079 MamRep1894 122 + 2 45 217564 43 chain 70408 chrX 155270560 + 117921100 117922181 MER11B 1079 - 5 1079 48210 23 1 0 171 0 1 53 8 9 21 0 2 7 59 53 16 2 6 114 21 22 52 0 1 15 28 16 18 18 17 12 8 10 9 0 1 425 chain 140310 chrX 155270560 + 117932736 117934623 LTR12C 1709 + 0 1707 26099 309 0 1 4 1 0 351 119 0 167 2 0 6 0 1 13 78 0 259 0 1 4 8 4 104 0 4 91 0 15 19 0 2 352 chain 6220 chrX 155270560 + 117933416 117933520 LTR12C 1709 + 799 943 113747 19 0 40 85 chain 2093 chrX 155270560 + 117933708 117933743 LTR12C 1709 + 1053 1088 113747 35 chain 3074 chrX 155270560 + 117933743 117933786 LTR12C 1709 + 650 693 96454 43 chain 10023 chrX 155270560 + 117951491 117951602 L1PA5 6144 + 6028 6139 160468 111 chain 74048 chrX 155270560 + 117992703 117994440 Tigger1 2417 + 1013 2026 46486 168 15 19 260 2 1 25 11 19 112 754 19 390 chain 19912 chrX 155270560 + 117993647 117994050 MSTA 426 + 0 426 127428 103 0 1 9 6 10 10 25 35 35 1 0 4 1 3 28 74 81 107 chain 35074 chrX 155270560 + 118018499 118018963 LTR71A 459 + 0 459 76085 159 12 6 57 0 2 183 2 1 51 chain 34636 chrX 155270560 + 118025251 118025707 LTR71A 459 + 0 459 76709 219 2 4 80 6 7 149 chain 6920 chrX 155270560 + 118032884 118032970 L1MD2 1676 - 648 733 178029 20 1 0 65 chain 117620 chrX 155270560 + 118055122 118056513 LTR12C 1709 - 0 1709 31920 481 0 4 107 2 0 6 1 319 529 1 0 155 5 4 104 chain 5900 chrX 155270560 + 118058554 118058629 L1MD2 1676 - 182 256 186187 54 1 0 20 chain 9451 chrX 155270560 + 118062470 118062593 LTR75 556 + 364 486 163308 117 1 0 5 chain 11670 chrX 155270560 + 118088418 118088553 L1PA3long 6157 + 6022 6157 153602 135 chain 8695 chrX 155270560 + 118100117 118100226 L1MB3 1562 + 625 734 167221 109 chain 366644 chrX 155270560 + 118126741 118132541 L1PB1 5432 + 59 5404 11195 29 6 5 36 0 2 265 1 0 5 3 0 361 1 0 283 0 2 7 1 2 173 4 6 160 1 0 7 2 0 2 4 0 40 16 11 17 0 4 68 0 4 71 8 7 16 1 0 4 1 2 28 301 0 506 1 0 312 7 4 26 2 4 290 1 0 7 10 5 12 1 0 88 0 4 69 0 2 9 1 0 6 155 332 344 1 6 31 0 3 45 0 1 4 325 0 134 0 14 22 2 0 339 0 4 172 14 5 145 0 1 84 0 2 191 0 2 55 0 3 66 13 14 7 0 1 5 2 1 25 0 4 21 1 2 10 3 0 23 1 0 5 20 15 9 2 0 14 1 4 34 1 0 18 1 0 44 1 0 7 0 1 7 1 0 4 24 13 14 8 5 14 2 0 6 0 1 17 1 0 21 1 0 13 chain 9978 chrX 155270560 + 118130012 118130130 L1PB1 5432 - 2113 2231 160687 118 chain 70301 chrX 155270560 + 118161493 118162727 LTR12D 1347 - 0 1347 48263 21 0 2 204 0 200 128 2 1 14 0 7 35 42 0 17 147 29 122 41 31 139 3 0 60 0 37 25 62 92 107 0 15 5 3 0 15 1 0 41 chain 1319 chrX 155270560 + 118161911 118161939 LTR12D 1347 - 667 695 137881 28 chain 5746 chrX 155270560 + 118161956 118162078 LTR12D 1347 - 712 865 137881 67 27 58 28 chain 1728 chrX 155270560 + 118162225 118162260 LTR12D 1347 - 852 887 190689 35 chain 129729 chrX 155270560 + 118163294 118164843 LTR12C 1709 + 0 1709 28145 526 1 0 165 0 159 261 1 0 8 2 0 105 0 4 52 1 2 427 chain 28391 chrX 155270560 + 118167902 118168238 LTR14A 344 + 0 344 91615 171 0 4 91 0 4 74 chain 5586 chrX 155270560 + 118168905 118168978 L1MB2 1706 + 1605 1677 189213 6 1 0 66 chain 6060 chrX 155270560 + 118179466 118179533 MLT2B4 540 + 48 115 184747 67 chain 3209 chrX 155270560 + 118183471 118183509 L1PREC2 3366 + 1735 1773 220757 38 chain 3393 chrX 155270560 + 118218524 118218560 L1PB1 5432 + 5245 5281 217227 36 chain 3935 chrX 155270560 + 118218561 118218669 L1PB1 5432 + 5281 5391 208333 15 14 1 27 14 30 16 1 0 21 chain 23178 chrX 155270560 + 118236753 118237185 MER4A 717 + 207 709 114778 119 0 11 60 0 1 75 119 177 59 chain 40998 chrX 155270560 + 118245246 118245725 L1PA7 6471 + 5988 6464 67908 471 3 0 5 chain 19926 chrX 155270560 + 118245886 118246219 THE1D 372 + 0 372 127375 149 69 75 30 0 31 71 0 2 14 chain 22594 chrX 155270560 + 118262649 118262926 AluSp 311 - 23 300 117607 277 chain 6756 chrX 155270560 + 118265273 118265418 L1PA16 3655 + 3506 3619 179279 71 10 0 14 22 5 7 5 0 16 chain 3831 chrX 155270560 + 118266077 118266190 MLT1E1A 663 + 436 557 209925 18 58 66 37 chain 14924 chrX 155270560 + 118271540 118271754 MER30 238 + 0 238 141561 108 4 0 7 1 23 12 3 9 79 chain 7317 chrX 155270560 + 118279278 118279398 MER20 218 - 79 197 175315 22 1 0 26 17 16 54 chain 5065 chrX 155270560 + 118279509 118279568 MER1A 529 + 32 91 194485 59 chain 188878 chrX 155270560 + 118298089 118300144 L1PA3long 6157 + 4103 6157 20158 1908 1 0 146 chain 19687 chrX 155270560 + 118311638 118311861 L1PA4 6152 - 12 228 128139 135 7 0 81 chain 6147 chrX 155270560 + 118311908 118311977 L1PA4 6152 - 160 229 184010 69 chain 90151 chrX 155270560 + 118314343 118315375 L1PA5 6144 + 5111 6144 39596 673 4 5 355 chain 64201 chrX 155270560 + 118319134 118319895 L1PA7 6471 - 1 761 50917 9 2 0 323 1 2 426 chain 41813 chrX 155270560 + 118321192 118322132 MER51A 677 + 16 661 66873 89 0 1 38 0 10 22 0 44 18 0 19 4 0 1 135 7 0 115 2 1 20 4 6 9 364 0 113 chain 11466 chrX 155270560 + 118330196 118330410 MLT1A1 405 - 0 233 154449 70 1 0 47 1 5 17 42 58 36 chain 126907 chrX 155270560 + 118341336 118342996 LTR12C 1709 - 0 1706 28838 481 0 4 107 3 1 5 1 0 259 78 0 14 2 1 40 5 128 561 9 10 95 chain 3788 chrX 155270560 + 118342192 118342235 LTR12C 1709 - 1016 1059 136996 43 chain 251 chrX 155270560 + 118342235 118342270 LTR12C 1709 - 621 656 142476 35 chain 142478 chrX 155270560 + 118343060 118345407 LTR12C 1709 - 8 1709 25731 57 131 0 416 0 4 107 3 1 5 1 0 274 516 0 837 chain 3917 chrX 155270560 + 118344070 118344123 LTR12C 1709 - 1006 1059 108132 53 chain 444 chrX 155270560 + 118344156 118344218 LTR12C 1709 - 695 757 142476 62 chain 23518 chrX 155270560 + 118344218 118344568 LTR12C 1709 - 597 871 113032 34 0 2 224 78 0 14 chain 3839 chrX 155270560 + 118344476 118344519 LTR12C 1709 - 1016 1059 136415 43 chain 4625 chrX 155270560 + 118349283 118349338 L1MA7 2200 + 1892 1947 199346 55 chain 40775 chrX 155270560 + 118351284 118352239 MER4B 649 - 21 649 68206 63 1 0 76 0 5 31 59 41 209 314 0 11 2 0 125 34 37 30 chain 16082 chrX 155270560 + 118379264 118379486 MER30 238 + 0 238 138106 93 0 3 12 4 14 67 1 4 45 chain 16446 chrX 155270560 + 118411035 118411273 AluSz 310 + 10 237 137076 10 0 8 91 2 1 57 18 0 60 chain 99059 chrX 155270560 + 118433847 118435115 LTR12C 1709 + 386 1709 37010 313 0 159 253 1 0 6 2 0 107 0 4 171 105 0 310 chain 39325 chrX 155270560 + 118441223 118441774 MLT2A2 560 + 0 560 70291 204 0 1 74 0 10 19 22 0 59 23 46 77 0 1 57 4 0 12 chain 62698 chrX 155270560 + 118442778 118443517 LTR17 781 - 0 781 51592 31 0 44 168 1 0 211 1 0 327 chain 33648 chrX 155270560 + 118443670 118444113 MER4A1 472 + 0 458 78174 232 0 21 16 18 11 46 0 1 131 chain 186566 chrX 155270560 + 118447390 118450791 MER4-int 2692 + 5 2692 20373 6 1 0 25 2 0 63 3 0 8 11 8 9 1 3 158 0 1 39 0 1 33 0 1 26 0 2 390 0 13 37 0 2 348 0 1 209 2 230 278 321 0 287 317 0 117 45 0 8 0 46 75 0 1 55 330 0 19 23 33 155 chain 36681 chrX 155270560 + 118450799 118451273 MER4A1 472 + 0 472 73984 12 0 1 246 15 12 201 chain 28044 chrX 155270560 + 118451745 118452177 LTR7Y 441 - 10 441 92841 96 10 2 89 68 84 57 9 0 103 chain 294175 chrX 155270560 + 118453440 118457002 HERVH-int 3825 - 0 3825 13754 225 3 8 143 1 4 6 3 0 72 4 10 6 6 0 21 0 210 39 9 11 621 0 1 98 0 4 48 0 1 81 2 1 75 0 3 112 0 10 299 7 33 241 0 1 483 0 2 177 2 1 51 1 2 5 2 0 21 2 1 42 0 37 15 28 0 24 1 0 9 2 1 38 5 0 532 chain 27557 chrX 155270560 + 118457016 118457434 LTR7Y 441 - 14 441 94481 149 0 2 32 68 84 52 14 5 103 chain 35299 chrX 155270560 + 118463402 118463969 MER51A 677 - 0 677 75798 57 6 5 76 12 13 13 1 0 37 0 1 66 0 87 33 74 53 16 0 44 176 chain 141257 chrX 155270560 + 118465654 118467322 LTR12C 1709 + 0 1709 25944 812 0 40 259 0 1 4 5 1 107 0 4 481 chain 43357 chrX 155270560 + 118467378 118468025 LTR12C 1709 + 2 650 51427 157 10 11 480 chain 26207 chrX 155270560 + 118468025 118468825 LTR12C 1709 + 928 1709 44196 184 132 10 102 0 4 25 0 1 184 1 99 172 chain 7371 chrX 155270560 + 118468209 118468319 LTR12C 1709 + 674 784 51427 110 chain 46151 chrX 155270560 + 118485265 118486472 L1PB3 3668 + 2906 3620 61894 82 0 2 13 2 0 288 1 0 99 4 3 61 69 0 6 5 1 17 407 3 14 2 0 8 2 1 24 8 6 32 8 4 12 21 17 15 1 0 6 chain 2030 chrX 155270560 + 118485984 118486008 L1PB3 3668 + 3529 3553 238351 24 chain 143379 chrX 155270560 + 118495324 118497000 SVA_D 2077 + 0 2077 25585 555 0 40 129 0 3 34 3 0 156 4 268 118 0 98 214 0 1 7 2 1 441 1 0 12 chain 5601 chrX 155270560 + 118497139 118497202 MER51A 677 - 0 63 189075 63 chain 5700 chrX 155270560 + 118499034 118499123 MER58B 340 + 147 232 188115 48 10 6 31 chain 12894 chrX 155270560 + 118506715 118506889 MER51A 677 - 7 180 148657 57 2 1 77 1 2 20 1 0 16 chain 144556 chrX 155270560 + 118520356 118522112 LTR12C 1709 - 0 1709 25388 26 1 0 219 0 1 102 6 0 133 0 4 107 2 0 6 1 0 274 1 0 130 41 0 707 chain 2575 chrX 155270560 + 118521364 118521393 LTR12C 1709 - 843 872 107982 29 chain 38112 chrX 155270560 + 118523073 118523638 MER51A 677 + 0 661 71966 176 0 44 15 34 54 37 0 8 47 0 1 4 0 30 100 3 2 17 0 2 50 10 2 72 chain 3280 chrX 155270560 + 118525863 118525899 MLT1A1 405 + 357 393 219367 36 chain 26655 chrX 155270560 + 118531048 118531337 AluYf4 310 - 21 310 97470 289 chain 17176 chrX 155270560 + 118538685 118538907 MER30 238 - 0 238 135095 53 0 2 58 4 18 107 chain 14538 chrX 155270560 + 118557704 118557868 U1 164 + 0 164 142768 164 chain 566884 chrX 155270560 + 118569431 118575456 L1HS 6032 - 0 6030 96 1657 1 5 4297 0 1 70 chain 7555 chrX 155270560 + 118590520 118590613 HY3 101 + 0 94 173833 69 0 1 24 chain 21735 chrX 155270560 + 118613523 118613780 AluY 311 + 36 291 121258 96 0 1 149 3 0 9 chain 141478 chrX 155270560 + 118620612 118622391 LTR12C 1709 - 0 1709 25903 333 16 18 75 0 1 29 1 0 25 0 4 107 2 0 6 1 0 259 79 0 15 1 0 166 2 9 662 chain 3670 chrX 155270560 + 118621466 118621510 LTR12C 1709 - 1016 1059 139326 30 2 1 12 chain 2968 chrX 155270560 + 118621510 118621545 LTR12C 1709 - 940 975 141555 35 chain 25516 chrX 155270560 + 118638211 118638511 AluSp 311 - 12 311 102157 42 0 1 128 2 0 128 chain 79039 chrX 155270560 + 118643284 118644637 L1PB3 3668 - 499 1524 44035 83 8 9 74 9 1 14 2 0 79 0 2 36 1 0 26 0 4 58 12 5 113 1 0 163 319 0 159 0 3 196 chain 11959 chrX 155270560 + 118652240 118652373 L1PA5 6144 + 6011 6144 152365 133 chain 10160 chrX 155270560 + 118653101 118653223 MER65A 464 - 154 275 159807 16 1 0 105 chain 4653 chrX 155270560 + 118658440 118658513 MADE1 96 - 2 96 199032 30 7 28 36 chain 2742 chrX 155270560 + 118665974 118666178 L2a 937 + 12 210 229577 15 20 14 16 127 127 26 chain 13813 chrX 155270560 + 118668746 118668953 L1MB2 1706 + 911 1104 145204 94 14 8 4 1 0 49 7 0 38 chain 24604 chrX 155270560 + 118690282 118690562 AluY 311 + 18 299 106969 108 0 1 172 chain 24666 chrX 155270560 + 118743873 118744176 AluSg7 307 - 11 307 106633 32 8 0 132 0 1 131 chain 23548 chrX 155270560 + 118757521 118757829 AluSx 319 + 3 297 112863 90 1 0 196 13 0 8 chain 25241 chrX 155270560 + 118758148 118758426 AluSp 311 - 22 300 103524 278 chain 15602 chrX 155270560 + 118802763 118803039 L1PB1 5432 - 5 256 139577 5 2 0 9 0 1 8 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 6 5 38 1 0 18 1 0 43 chain 9175 chrX 155270560 + 118831992 118832176 THE1D 372 + 1 157 164682 55 10 1 17 3 0 6 38 22 55 chain 9351 chrX 155270560 + 118852205 118852319 L1MB7 1623 + 612 726 163799 114 chain 3438 chrX 155270560 + 118867333 118867369 MLT1C 463 + 225 261 216438 36 chain 23212 chrX 155270560 + 118868014 118868298 AluY 311 + 0 293 114630 14 0 10 152 3 2 115 chain 20272 chrX 155270560 + 118875461 118875758 THE1B 368 + 0 306 126308 172 4 3 23 35 45 63 chain 128004 chrX 155270560 + 118883801 118885356 LTR12C 1709 - 1 1709 28567 298 2 1 94 1 0 5 4 5 13 3 0 5 0 3 56 0 4 107 2 0 6 1 0 57 0 1 57 0 159 504 9 2 331 chain 4936 chrX 155270560 + 118901488 118901591 MSTB1 431 + 64 166 195864 50 32 31 21 chain 46735 chrX 155270560 + 118903242 118903951 LTR12 884 + 0 869 61428 24 1 0 34 2 43 277 2 0 66 31 31 29 0 1 26 0 17 13 0 103 109 50 51 45 chain 3942 chrX 155270560 + 118905725 118905794 MLT1A0 366 - 213 282 208242 34 8 9 22 1 0 4 chain 93503 chrX 155270560 + 118939443 118940459 L1PA2 6032 + 5011 6032 38508 164 0 5 852 chain 12741 chrX 155270560 + 118960462 118960625 HSMAR2 1300 + 446 620 149286 23 0 3 47 1 0 34 0 9 58 chain 42050 chrX 155270560 + 118990808 118991337 LTR10A 586 + 25 586 66558 34 0 8 7 0 1 28 0 21 17 2 0 5 0 1 63 0 1 33 0 1 36 1 2 303 chain 43197 chrX 155270560 + 119018935 119019420 L1PA5 6144 + 5646 6131 65175 430 0 2 5 2 0 48 chain 42896 chrX 155270560 + 119019736 119020426 MER51A 677 + 0 661 65544 144 0 1 31 60 0 23 10 0 37 5 6 45 7 14 92 9 39 101 1 2 45 8 9 72 chain 112551 chrX 155270560 + 119024381 119025793 LTR12C 1709 + 0 1702 33517 157 0 10 408 0 1 74 0 278 184 1 0 4 4 2 106 0 4 52 35 32 123 14 13 230 0 4 20 chain 38344 chrX 155270560 + 119025971 119026456 LTR2C 499 + 0 499 71660 159 1 3 18 21 33 286 chain 23569 chrX 155270560 + 119035695 119035985 AluSp 311 + 5 285 112744 199 10 0 81 chain 24416 chrX 155270560 + 119045893 119046199 AluSq2 311 - 10 311 107996 172 0 1 117 7 1 10 chain 29871 chrX 155270560 + 119059898 119060218 AluYb9 318 - 0 318 85205 10 2 0 308 chain 4147 chrX 155270560 + 119075463 119075511 MIR 256 - 147 195 205278 48 chain 4535 chrX 155270560 + 119083392 119083453 L1MC2 1988 - 0 59 200406 5 1 0 37 1 0 17 chain 22851 chrX 155270560 + 119084149 119084826 MLT2A2 560 - 1 560 116338 36 252 22 57 34 143 69 30 36 16 1 0 5 6 7 123 17 14 31 chain 28447 chrX 155270560 + 119087957 119088293 LTR14A 344 + 1 344 91387 170 0 4 64 0 1 21 0 2 81 chain 65962 chrX 155270560 + 119090002 119090885 LTR12 884 - 0 884 50119 244 105 0 262 2 0 40 0 1 153 0 107 77 chain 481353 chrX 155270560 + 119095452 119101322 L1PA5 6144 + 1 6144 7675 120 0 14 1035 9 0 451 0 2 494 309 0 389 0 2 109 0 569 10 1 0 175 1 0 719 0 2 188 0 2 587 0 1 255 0 1 168 1 0 708 0 1 141 chain 64486 chrX 155270560 + 119101959 119102659 L1PA2 6032 + 5330 6028 50807 692 2 0 6 chain 34074 chrX 155270560 + 119104417 119104963 MER51A 677 - 0 677 77508 58 5 4 51 1 0 156 5 172 19 0 1 17 10 0 20 17 0 26 2 1 8 1 2 24 12 4 114 chain 152984 chrX 155270560 + 119111007 119112712 L1PA5 6144 - 0 1706 24232 1274 0 1 431 chain 25363 chrX 155270560 + 119138196 119138551 THE1A 353 + 0 353 102866 13 2 0 34 0 1 46 1 0 17 0 2 6 17 15 219 chain 2655 chrX 155270560 + 119139791 119139876 MER51A 677 - 446 501 230979 11 0 1 4 1 0 19 36 6 14 chain 4885 chrX 155270560 + 119148033 119148265 AluJr4 308 - 51 298 196429 57 124 0 9 22 161 20 chain 5405 chrX 155270560 + 119159462 119159548 LTR12C 1709 - 872 943 190941 64 15 0 7 chain 8015 chrX 155270560 + 119159550 119159645 LTR12C 1709 - 641 777 170965 41 0 41 54 chain 24862 chrX 155270560 + 119161118 119161411 AluSp 311 - 18 311 105560 293 chain 4982 chrX 155270560 + 119167073 119167265 MLT1-int 490 + 165 276 195342 38 121 40 33 chain 40154 chrX 155270560 + 119169769 119170247 LTR2B 499 - 0 484 69104 395 0 7 32 1 0 50 chain 27370 chrX 155270560 + 119175719 119176158 LTR7Y 441 + 0 441 95047 103 10 0 62 63 79 72 4 0 125 chain 546062 chrX 155270560 + 119180379 119186483 L1PA4 6152 - 9 6149 1937 250 0 1 583 0 5 254 0 1 212 6 20 2278 1 17 94 0 1 216 3 5 277 1 0 1740 3 0 186 chain 20091 chrX 155270560 + 119195653 119196000 THE1D 372 + 0 333 126855 12 0 2 15 1 0 25 18 0 20 4 5 60 7 8 19 32 34 25 1 0 108 chain 29876 chrX 155270560 + 119197317 119197725 MLT2A1 477 + 7 411 85182 59 0 1 75 0 1 25 1 5 104 1 0 46 1 0 59 0 1 12 9 0 16 chain 12385 chrX 155270560 + 119202365 119202588 MER57A1 433 + 204 433 150690 37 10 11 19 11 13 14 21 24 111 chain 39684 chrX 155270560 + 119213887 119214349 LTR15 485 - 0 479 69778 138 0 16 260 0 1 64 chain 38184 chrX 155270560 + 119222179 119222652 LTR15 485 - 0 485 71864 49 4 0 56 0 2 31 0 1 53 0 12 177 0 1 103 chain 9412 chrX 155270560 + 119226039 119226245 L1PB1 5432 + 5236 5421 163497 46 1 0 14 26 14 17 2 0 5 1 0 16 2 0 9 16 15 19 1 0 13 1 0 17 chain 213359 chrX 155270560 + 119231901 119234444 Harlequin-int 5206 + 803 3382 18268 111 0 12 281 0 3 98 0 2 838 0 1 349 1 0 52 1 21 272 1 0 539 chain 104010 chrX 155270560 + 119237954 119239175 L1PA7 6471 + 5233 6464 35733 42 0 5 729 1 4 271 0 1 28 6 7 144 chain 5576 chrX 155270560 + 119248407 119248482 L1MB2 1706 + 799 876 189313 27 1 3 47 chain 16340 chrX 155270560 + 119257815 119257998 L1PA4 6152 - 9 193 137368 106 0 1 77 chain 47258 chrX 155270560 + 119262132 119262884 MER51A 677 - 0 677 60997 64 2 1 272 1 2 46 36 56 37 10 0 6 68 0 14 20 3 176 chain 6446 chrX 155270560 + 119267017 119267370 LOR1-int 1871 - 458 862 181672 36 253 304 64 chain 49203 chrX 155270560 + 119276948 119277534 LTR10C 591 + 0 591 59589 227 0 2 281 0 2 39 2 3 37 chain 44326 chrX 155270560 + 119278712 119279313 HERVIP10FH-int 2884 + 165 768 63796 23 0 1 18 7 6 5 0 1 175 1 0 5 1 0 85 2 1 48 0 1 4 1 0 97 0 3 78 1 2 50 chain 40959 chrX 155270560 + 119280308 119280790 LTR15 485 + 0 485 67962 402 7 11 68 1 0 4 chain 39684 chrX 155270560 + 119289818 119290280 LTR15 485 + 6 485 69777 68 0 1 256 0 16 138 chain 29876 chrX 155270560 + 119306448 119306856 MLT2A1 477 - 66 470 85183 15 9 0 11 0 1 61 1 0 46 1 0 104 1 5 25 0 1 75 0 1 59 chain 20091 chrX 155270560 + 119308173 119308520 THE1D 372 - 39 372 126856 109 1 0 24 32 34 19 7 8 60 4 5 20 18 0 22 1 0 18 0 2 12 chain 547543 chrX 155270560 + 119317686 119323804 L1PA4 6152 + 3 6143 1762 186 3 0 1743 1 0 274 3 5 217 0 1 93 1 17 2510 0 1 254 0 5 583 0 1 250 chain 27370 chrX 155270560 + 119328025 119328464 LTR7Y 441 - 0 441 95048 121 4 0 76 63 79 62 10 0 103 chain 5013 chrX 155270560 + 119333240 119333299 MLT1B 390 + 293 352 194987 59 chain 36661 chrX 155270560 + 119342347 119343246 LTR18B 584 + 0 573 74011 139 11 18 20 61 56 226 339 9 21 0 1 51 0 1 31 chain 36923 chrX 155270560 + 119358149 119358614 LTR15 485 - 7 485 73627 28 12 8 123 0 13 21 0 4 281 chain 4553 chrX 155270560 + 119362711 119362771 MER4A 717 + 658 717 200185 51 1 0 8 chain 44427 chrX 155270560 + 119369051 119369650 MER4A1_ 611 + 9 611 63665 57 13 6 4 1 0 46 7 4 48 1 8 174 0 5 85 0 2 163 chain 5180 chrX 155270560 + 119370544 119370615 Tigger2b_Pri 1066 - 996 1066 193227 16 1 0 54 chain 9615 chrX 155270560 + 119400811 119400938 MER85 139 + 0 139 162510 96 2 14 29 chain 12439 chrX 155270560 + 119461407 119461595 MER30 238 + 41 238 150497 41 0 1 14 22 33 66 3 0 42 chain 6013 chrX 155270560 + 119474233 119474306 MLT1A 405 - 331 405 185107 16 0 1 57 chain 7970 chrX 155270560 + 119474799 119474929 L1PB1 5432 + 5297 5427 171217 30 2 0 5 1 0 14 2 0 24 1 0 10 0 9 15 1 0 18 2 0 5 chain 544178 chrX 155270560 + 119478090 119484252 L1PA4 6152 + 0 6141 2190 575 0 1 32 16 0 832 2 1 133 0 1 636 2 0 110 4 0 3820 chain 26529 chrX 155270560 + 119490627 119490932 AluY 311 + 0 305 97935 48 1 0 78 0 1 178 chain 5468 chrX 155270560 + 119502379 119502444 MIRb 242 - 95 160 190322 65 chain 10395 chrX 155270560 + 119507890 119508022 LTR8 732 - 14 146 158715 132 chain 528412 chrX 155270560 + 119519108 119525063 L1PA5 6144 - 188 6139 4364 71 1 0 58 0 1 2655 0 1 856 4 0 110 2 0 1778 0 1 420 chain 5075 chrX 155270560 + 119529462 119529561 MLT1A0 366 + 179 307 194357 22 26 55 51 chain 3499 chrX 155270560 + 119540668 119540903 MLT2F 649 - 337 611 215370 39 52 54 14 113 150 17 chain 20580 chrX 155270560 + 119542704 119543079 THE1D 372 - 0 372 125363 132 68 73 93 27 18 34 0 1 21 chain 17379 chrX 155270560 + 119577618 119577829 AluSc8 310 + 64 278 134567 68 0 3 143 chain 10132 chrX 155270560 + 119593686 119593852 Tigger2 2703 - 61 232 159941 100 28 30 23 0 3 15 chain 75893 chrX 155270560 + 119603394 119604394 L1PA8A 6298 - 7 1040 45551 71 56 17 195 0 2 135 1 61 240 0 2 8 3 4 65 0 3 141 0 4 85 chain 16515 chrX 155270560 + 119609581 119609763 SVA_D 2077 - 0 182 136876 182 chain 34937 chrX 155270560 + 119624080 119624514 L1PA8 5853 + 5427 5853 76281 137 1 0 44 2 0 74 1 0 5 3 1 56 1 0 16 1 0 93 chain 9489 chrX 155270560 + 119626501 119626615 MER49 923 + 612 731 163120 37 0 5 77 chain 4086 chrX 155270560 + 119636904 119636950 U7 62 - 15 61 206126 46 chain 7445 chrX 155270560 + 119637186 119637506 L1MD 993 - 237 562 174471 20 195 201 28 5 4 72 chain 9073 chrX 155270560 + 119638252 119638372 Tigger1 2417 + 13 148 165204 14 1 16 105 chain 6312 chrX 155270560 + 119640752 119640895 L1MA1 4479 - 289 426 182692 18 33 30 33 7 5 26 1 0 25 chain 12748 chrX 155270560 + 119647185 119647336 LTR26B 539 + 284 435 149263 151 chain 24465 chrX 155270560 + 119653271 119653546 L1P1 4361 - 3333 3608 106261 275 chain 212521 chrX 155270560 + 119653546 119655958 L1PA5 6144 + 3707 6126 18326 515 2 0 113 1 0 6 0 4 283 3 6 235 1 0 223 0 1 206 0 3 824 chain 5794 chrX 155270560 + 119680103 119680225 L1PB1 5432 + 5308 5424 187213 22 16 14 26 1 0 21 1 0 13 3 2 14 1 0 4 chain 32590 chrX 155270560 + 119681496 119681939 MLT2A1 477 + 0 477 79870 140 0 1 27 1 5 212 3 43 10 14 4 16 1 0 19 chain 3420 chrX 155270560 + 119720262 119720299 L2a 937 - 175 212 216759 37 chain 22591 chrX 155270560 + 119720424 119720692 AluSq2 311 + 11 278 117624 123 1 0 144 chain 5074 chrX 155270560 + 119723295 119723353 U3 216 + 0 58 194360 58 chain 194087 chrX 155270560 + 119730353 119734700 L1MA1 4479 + 228 4173 19666 50 2 0 9 0 9 22 0 2 208 0 4 35 0 4 172 4 3 37 23 15 104 0 3 6 17 19 49 1 5 163 0 1 530 0 2 271 5 4 130 6 4 27 3 4 42 4 0 31 0 4 396 296 18 38 1344 1213 84 1 0 6 8 5 121 2 1 28 2 0 35 2 1 8 1 0 8 2 0 14 chain 24329 chrX 155270560 + 119765465 119765744 AluYk4 311 + 0 277 108499 64 2 0 213 chain 7800 chrX 155270560 + 119765744 119765827 AluY 311 + 49 132 172306 83 chain 24679 chrX 155270560 + 119770802 119771132 L1PA15 4387 - 528 859 106560 41 7 5 127 3 4 83 7 9 62 chain 61361 chrX 155270560 + 119771463 119772436 L1PREC2 3366 + 2058 3000 52169 85 1 0 204 8 12 75 2 3 41 0 1 28 0 1 117 1 2 125 2 0 22 0 1 31 1 0 44 1 0 3 3 0 11 57 44 12 0 7 7 9 0 17 4 1 11 22 8 29 chain 26440 chrX 155270560 + 119773707 119773997 AluYf4 310 + 1 291 98270 290 chain 228076 chrX 155270560 + 119783917 119786651 L1PA7 6471 + 3749 6470 17413 87 1 0 166 10 0 33 0 1 629 2 1 546 1 2 39 5 0 96 1 0 122 0 2 148 1 0 541 0 1 109 2 3 195 chain 3730 chrX 155270560 + 119804776 119804822 L1MB3 1562 + 1368 1414 211459 46 chain 119190 chrX 155270560 + 119809271 119810853 THE1C-int 1605 - 7 1605 31340 94 1 0 4 0 2 298 1 2 57 6 10 370 8 2 295 7 19 64 1 0 44 0 6 11 6 7 118 9 8 172 2 1 14 chain 19914 chrX 155270560 + 119812604 119813218 L1MA9 1812 - 88 657 127419 16 4 3 28 230 204 16 1 0 36 14 9 16 25 24 38 22 15 5 3 0 125 1 0 34 chain 248976 chrX 155270560 + 119832384 119835798 L1PA14 3548 + 67 3465 16312 6 1 0 10 12 7 58 4 0 69 1 0 8 14 13 22 16 14 23 8 6 364 0 1 66 0 29 679 22 18 25 1 2 9 1 0 80 0 1 218 2 0 104 2 3 67 0 1 204 0 2 359 2 1 91 3 0 5 17 20 125 5 10 146 8 6 14 2 0 47 2 0 5 2 0 105 2 0 5 2 0 16 2 0 6 1 0 84 1 0 111 1 0 11 4 0 36 4 2 11 2 0 4 1 0 18 1 0 41 6 0 10 chain 23260 chrX 155270560 + 119838182 119838438 AluSp 311 - 30 286 114386 256 chain 45684 chrX 155270560 + 119841212 119841838 L1PA16 3655 + 2952 3575 62329 4 1 0 26 13 15 83 1 0 122 0 4 64 5 0 21 2 0 284 chain 29043 chrX 155270560 + 119843928 119844406 MLT2A2 560 + 0 534 88791 169 5 6 8 1 0 13 50 51 30 23 69 15 3 0 31 0 1 9 0 11 121 chain 5162 chrX 155270560 + 119848082 119848155 L1PB1 5432 - 16 86 193425 12 1 0 13 1 0 21 1 0 24 chain 167651 chrX 155270560 + 119854836 119857272 L1PB2 3958 - 120 2541 22322 63 1 0 12 3 0 10 2 0 73 1 0 63 1 0 70 6 7 89 2 0 12 2 0 62 4 0 12 6 5 51 3 0 92 4 0 6 8 12 275 1 0 292 1 0 60 6 5 58 40 28 27 1 9 35 28 35 109 0 1 4 4 3 114 8 3 187 1 5 103 15 13 12 0 1 177 0 3 50 1 0 5 14 17 92 11 12 47 chain 32672 chrX 155270560 + 119863573 119863939 L1PA5 6144 - 8 374 79728 366 chain 4508 chrX 155270560 + 119873016 119873071 MER5A1 166 + 80 135 200697 55 chain 30345 chrX 155270560 + 119906930 119907247 AluYb8 318 - 1 318 83788 317 chain 26119 chrX 155270560 + 119910354 119910728 THE1C 375 - 0 374 99532 9 0 2 84 3 0 82 10 4 12 0 3 36 9 13 129 chain 5421 chrX 155270560 + 119922101 119922158 L1PA4 6152 - 181 238 190792 57 chain 6069 chrX 155270560 + 119922158 119922225 L1PA4 6152 + 6069 6136 184659 67 chain 20324 chrX 155270560 + 119940960 119941690 L1PB1 5432 - 182 516 126168 14 1 0 15 2 1 45 27 21 8 1 0 8 1 0 22 3 0 14 387 4 182 chain 89952 chrX 155270560 + 119941690 119942803 MER11A 1151 + 0 1151 39667 228 1 0 66 0 11 198 0 3 64 2 0 7 6 0 108 3 1 176 7 5 16 1 36 74 0 2 156 chain 6772 chrX 155270560 + 119942838 119943008 L1PB1 5432 + 5260 5409 179164 22 1 0 14 1 0 4 4 6 6 13 0 14 14 11 9 2 0 24 1 0 22 1 0 12 1 0 5 chain 204413 chrX 155270560 + 119945395 119947884 L1P2 5180 + 2 2511 18893 147 1 0 98 1 0 260 1 0 8 1 0 272 1 0 6 1 0 16 0 1 123 0 25 713 0 1 441 0 3 207 4 0 188 chain 53051 chrX 155270560 + 119947884 119948530 LTR6A 649 + 0 649 56985 239 0 3 193 1 0 186 1 2 26 chain 320009 chrX 155270560 + 119948530 119952157 L1PA5 6144 + 2494 6136 12596 581 0 2 99 1 0 505 4 0 342 0 3 353 0 2 95 0 16 178 0 1 67 8 5 551 1 0 842 chain 133477 chrX 155270560 + 119953688 119955296 L1PA8A 6298 - 812 2424 27329 10 0 4 542 3 0 315 0 2 104 0 1 634 chain 66355 chrX 155270560 + 119955320 119956116 L1PA8A 6298 + 5492 6291 49929 337 0 1 337 8 16 10 6 0 98 chain 455856 chrX 155270560 + 119960998 119966751 L1PA8 5853 - 73 5803 8550 20 1 0 16 1 0 42 28 32 62 2 0 46 1 0 553 2 0 443 4 5 117 3 0 110 0 1 34 13 35 14 0 7 181 0 8 227 1 2 268 5 6 306 0 1 186 30 0 278 0 1 647 0 3 170 0 2 209 10 12 499 4 7 524 7 0 7 5 12 341 2 1 36 0 4 189 81 39 5 1 0 22 chain 54410 chrX 155270560 + 119969059 119969893 L1PB1 5432 - 12 839 56089 14 3 1 4 0 1 9 1 0 21 1 0 23 38 46 5 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 23 5 0 10 1 2 292 0 7 176 3 0 35 chain 16924 chrX 155270560 + 119969893 119970105 L1PB1 5432 + 4379 4596 135583 137 0 5 75 chain 10036 chrX 155270560 + 119977500 119977693 L1PB1 5432 - 155 340 160399 41 1 0 15 2 1 53 2 0 8 6 2 11 2 1 7 1 0 21 3 0 8 1 6 11 chain 6433 chrX 155270560 + 119977767 119977851 MER66B 489 - 152 235 181758 48 1 0 35 chain 3980 chrX 155270560 + 119978157 119978202 L1PA7 6471 - 1 46 207680 45 chain 152724 chrX 155270560 + 119980070 119982095 L1PBa 3878 - 130 2159 24264 11 2 0 20 1 0 244 1 2 52 0 1 197 3 0 171 8 11 7 1 0 185 0 1 142 1 5 19 0 1 198 32 32 22 1 4 503 3 0 201 chain 201795 chrX 155270560 + 119991430 119994397 L1PBa 3878 + 216 2832 19084 21 3 1 173 8 8 105 1 0 113 1 0 108 18 20 5 2 0 355 360 0 487 18 17 131 0 3 5 3 0 48 0 8 97 1 0 40 0 1 96 0 4 504 2 1 140 0 3 122 chain 40549 chrX 155270560 + 119996072 119996709 L1PA13 3608 - 90 723 68511 14 24 16 15 25 30 47 2 0 4 0 1 56 1 0 61 2 0 40 0 4 57 0 2 11 1 0 19 5 0 10 1 0 122 0 1 103 1 0 7 0 4 9 chain 51281 chrX 155270560 + 119996710 119997287 L1PA5 6144 - 0 574 58130 8 3 0 566 chain 148604 chrX 155270560 + 120125542 120127366 L1P3 4156 - 2335 4156 24805 159 1 0 229 0 1 779 0 1 332 1 0 69 1 0 50 44 42 159 chain 7348 chrX 155270560 + 120140187 120140287 L1M4c 1769 - 27 125 175105 12 1 0 81 1 0 5 chain 70573 chrX 155270560 + 120145612 120146674 L1MA3 4352 - 424 1522 48126 28 0 1 4 71 29 187 4 12 262 4 12 11 14 5 69 0 73 53 5 0 28 16 17 65 0 1 241 chain 77042 chrX 155270560 + 120151282 120152124 L1PA3long 6157 + 5310 6152 44949 842 chain 157853 chrX 155270560 + 120173995 120175963 L1PA8 5853 + 3890 5842 23618 19 5 7 496 14 13 15 10 0 418 0 5 65 1 0 8 10 3 158 1 4 461 1 0 47 2 0 69 2 1 10 1 0 55 1 0 16 1 0 82 chain 12038 chrX 155270560 + 120178274 120178446 L1PB 1623 - 1286 1456 152037 65 4 3 59 0 2 17 2 0 4 1 0 20 chain 19816 chrX 155270560 + 120178779 120179197 L1PB1 5432 + 5040 5423 127761 63 1 2 11 6 1 18 1 0 11 1 0 12 5 1 9 2 0 52 2 1 16 2 1 43 1 0 15 1 0 4 23 13 13 17 14 6 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 37185 chrX 155270560 + 120197148 120197805 L1PB1 5432 - 10 1632 73253 16 0 2 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 21 12 13 3 2 43 2 1 18 1 0 51 2 0 9 5 1 14 3 2 8 1 0 20 26 22 215 1 995 82 chain 17263 chrX 155270560 + 120199348 120199907 THE1B 368 + 0 368 134886 82 41 43 52 62 66 29 197 0 47 1 0 4 7 8 37 chain 174529 chrX 155270560 + 120204747 120208002 L1MA1 4479 - 289 2869 21537 14 1 0 4 6 0 17 16 13 35 7 5 146 1 0 4 8 5 56 9 11 21 1 0 6 25 22 5 1 0 71 1 0 16 2 0 25 1 0 72 1 0 129 2 0 78 1 0 47 4 1 124 5 0 7 6 5 74 25 19 88 0 1 2 627 0 82 2 0 27 1 0 154 7 11 22 2 0 38 1 0 40 2 1 22 1 0 25 1 0 5 0 2 36 1 0 120 1 4 394 3 2 54 1 2 65 2 1 4 1 0 188 6 0 88 1 2 16 0 1 51 chain 54995 chrX 155270560 + 120205929 120206534 L1PA3long 6157 - 8 613 55705 605 chain 23280 chrX 155270560 + 120210913 120211265 MER51B 395 - 7 395 114296 79 1 13 51 1 0 30 0 1 4 1 0 94 11 17 34 6 25 40 chain 120538 chrX 155270560 + 120211604 120214044 MER57-int 2662 - 168 2561 30864 52 40 49 61 2 0 54 4 0 331 40 37 416 15 12 106 4 7 236 0 43 17 0 1 102 637 7 20 2 1 65 1 9 26 96 616 74 0 13 31 1 0 7 chain 49184 chrX 155270560 + 120218072 120218642 LTR22 571 + 0 571 59609 256 1 2 313 chain 2265 chrX 155270560 + 120218700 120218724 MER51B 395 - 301 325 235796 24 chain 3502 chrX 155270560 + 120218735 120218775 MER51B 395 - 355 395 215343 40 chain 23939 chrX 155270560 + 120230913 120231200 AluSp 311 - 14 301 110695 287 chain 10352 chrX 155270560 + 120242838 120243064 L1PA17 2846 - 153 368 158897 39 24 22 32 1 0 8 17 15 42 1 0 24 15 10 23 chain 2640 chrX 155270560 + 120257196 120257236 L1MD 993 - 424 465 231163 10 1 2 29 chain 22416 chrX 155270560 + 120266582 120266932 MER51B 395 - 8 395 118403 79 0 12 44 11 10 126 0 7 6 4 3 32 18 38 30 chain 30784 chrX 155270560 + 120289301 120289712 MER41C 542 + 0 434 82891 49 0 1 117 8 9 135 7 28 95 chain 25048 chrX 155270560 + 120298055 120298463 L1PA16 3655 - 71 473 104557 6 3 0 152 50 51 72 14 12 21 1 0 66 1 0 22 chain 28514 chrX 155270560 + 120308151 120308454 AluYa5 310 - 2 305 91120 303 chain 81815 chrX 155270560 + 120310361 120311555 L1PB2 3958 - 120 1313 42836 32 1 0 31 1 0 26 2 0 67 2 1 64 1 0 77 3 2 65 0 4 18 3 1 11 3 1 10 0 1 5 13 12 33 3 0 16 1 0 54 2 0 58 32 33 211 0 14 67 1 0 214 2 0 65 chain 24929 chrX 155270560 + 120326890 120327175 L1PA6 6164 - 2 287 105168 285 chain 26385 chrX 155270560 + 120330720 120331114 LTR25 836 + 0 387 98469 57 1 0 62 1 0 76 33 0 10 0 33 41 9 3 29 0 1 75 chain 19733 chrX 155270560 + 120353549 120353795 AluSp 311 - 16 254 128004 24 8 0 214 chain 66252 chrX 155270560 + 120360208 120361637 L1PA13 3608 - 120 1223 49981 15 6 5 20 2 0 7 2 0 45 2 0 49 33 32 41 2 0 94 21 20 32 2 0 36 49 50 287 309 0 135 1 0 6 13 10 18 0 1 13 21 17 100 6 9 21 10 9 31 chain 42887 chrX 155270560 + 120361640 120362224 MER61F 604 + 0 571 65551 135 22 11 195 14 13 183 1 0 34 chain 13827 chrX 155270560 + 120371301 120371500 L1M1 2793 - 987 1185 145148 37 0 3 42 8 7 46 3 0 63 chain 32116 chrX 155270560 + 120384616 120385164 L1M1 2793 - 98 628 80658 10 1 0 11 1 0 40 11 10 164 24 21 101 0 4 33 8 0 10 1 0 4 0 4 7 2 3 54 23 12 8 1 0 34 chain 8616 chrX 155270560 + 120397508 120397630 Tigger4b 360 - 157 293 167654 70 6 17 5 0 3 41 chain 161947 chrX 155270560 + 120397646 120399367 L1HS 6032 - 0 1721 23057 1721 chain 230479 chrX 155270560 + 120399367 120401826 L1HS 6032 + 1866 4325 17283 2459 chain 44466 chrX 155270560 + 120403105 120403718 L1PA10 4194 + 644 4150 63615 321 0 1 28 0 1 8 0 1 127 0 2893 92 3 0 34 chain 79349 chrX 155270560 + 120407678 120408545 L1PA3long 6157 - 0 868 43887 240 0 1 627 chain 20325 chrX 155270560 + 120409747 120410004 MSTA-int 1630 + 0 258 126164 15 0 1 242 chain 111295 chrX 155270560 + 120433082 120434303 L1PA3long 6157 - 352 1576 33860 292 0 3 929 chain 21345 chrX 155270560 + 120434303 120434537 L1PA3long 6157 + 5923 6157 122710 234 chain 26845 chrX 155270560 + 120477757 120478161 LTR7 482 - 8 482 96818 165 1 2 15 0 31 78 0 51 17 15 14 15 29 17 69 chain 260481 chrX 155270560 + 120478691 120482118 HERVH-int 3825 - 357 3825 15671 453 1 0 85 0 5 314 0 1 96 7 8 405 10 15 60 0 3 366 0 4 14 0 1 168 1 0 13 0 2 14 20 11 6 0 3 195 15 0 447 59 0 16 0 38 12 56 109 24 1 21 14 21 0 12 1 0 17 0 1 29 24 0 9 0 26 61 14 26 20 7 6 53 1 0 264 1 0 21 chain 26841 chrX 155270560 + 120482128 120482482 LTR7 482 - 7 482 96841 169 0 1 10 1 32 111 18 107 45 chain 52943 chrX 155270560 + 120490095 120490835 LTR17 781 + 0 757 57053 59 1 0 97 1 0 155 2 0 16 1 0 145 36 36 195 8 30 24 chain 6265 chrX 155270560 + 120492757 120492854 L1MB1 2102 - 1400 1493 183044 79 6 2 12 chain 155272 chrX 155270560 + 120495611 120497320 L1PA3long 6157 - 0 1710 23952 613 1 2 1095 chain 40329 chrX 155270560 + 120499474 120499967 MER9B 498 + 0 493 68836 4 1 0 330 13 14 145 chain 6788 chrX 155270560 + 120514939 120515238 L1MA1 4479 + 2913 3208 47396 45 1 0 25 9 7 15 0 5 147 2 0 18 4 0 33 chain 99887 chrX 155270560 + 120515616 120516762 L1PA6 6164 - 2 1152 36812 9 0 2 775 0 1 49 0 1 313 chain 30601 chrX 155270560 + 120516770 120518118 L1MA1 4479 + 3222 4142 47396 29 1 0 13 5 0 52 10 6 67 4 0 130 2 0 73 5 6 117 11 10 14 2 0 16 1 0 34 0 1 25 23 22 9 3 1 12 6 5 49 91 13 21 1 0 5 3 0 60 333 12 44 13 12 27 2 0 35 chain 18107 chrX 155270560 + 120533729 120533986 LTR8 732 - 0 253 132576 64 3 0 81 11 7 18 0 1 69 0 2 11 chain 134838 chrX 155270560 + 120564398 120565944 LTR12C 1709 - 0 1709 27050 481 0 4 106 3 1 5 1 0 116 0 159 747 0 3 87 chain 330108 chrX 155270560 + 120571498 120575192 L1HS 6032 + 1 3705 12200 255 1 0 570 0 4 204 0 3 2067 0 4 597 chain 2952 chrX 155270560 + 120583144 120583178 L1MB1 2102 - 180 214 226039 34 chain 30933 chrX 155270560 + 120583178 120583620 MLT2A1 477 + 0 477 82628 141 4 3 26 4 1 8 0 1 23 0 1 171 9 10 8 1 0 9 0 37 38 chain 437601 chrX 155270560 + 120583620 120589146 HERVL-int 5654 + 0 5652 9110 185 0 1 469 8 4 45 2 3 345 1 101 758 1 2 5 1 0 769 4 3 4 0 1 90 1 0 199 0 31 163 0 9 99 4 1 258 6 10 65 0 1 37 11 14 160 11 10 123 0 1 117 0 1 25 1 2 256 0 4 113 5 1 411 7 10 59 0 1 98 0 1 160 31 4 17 1 2 116 0 3 285 chain 13272 chrX 155270560 + 120594807 120594975 THE1B-int 1605 + 34 200 147207 160 2 0 6 chain 150392 chrX 155270560 + 120605899 120607690 L1PA7 6471 - 10 1906 24553 347 0 1 236 0 99 138 0 1 18 1 0 15 9 14 637 1 0 223 0 1 166 chain 13293 chrX 155270560 + 120613371 120613585 THE1C 375 + 113 325 147118 7 3 0 54 33 34 117 chain 28851 chrX 155270560 + 120615207 120615688 MER11A 1151 - 135 599 89669 28 6 7 13 0 1 46 0 1 21 31 13 24 8 15 11 25 1 48 0 2 7 1 13 75 5 6 132 chain 22169 chrX 155270560 + 120623241 120623518 AluSp 311 + 9 296 119499 15 1 0 182 0 9 62 1 3 16 chain 168745 chrX 155270560 + 120645037 120646944 L1PA5 6144 - 18 1936 22196 135 1 0 100 0 4 585 0 8 1086 chain 18378 chrX 155270560 + 120646944 120647153 L1PA5 6144 + 3988 4197 131850 209 chain 34313 chrX 155270560 + 120655973 120656439 L1PA10 4194 + 3694 4161 77185 79 0 1 17 0 3 288 39 37 32 1 0 10 chain 2180 chrX 155270560 + 120663087 120663190 MER1B 344 - 109 210 236844 12 2 0 14 53 54 4 1 0 17 chain 553711 chrX 155270560 + 120665052 120671207 L1PA3long 6157 - 0 6151 979 138 7 0 2701 1 0 134 0 1 1661 0 2 497 0 1 1016 chain 4903 chrX 155270560 + 120701320 120701372 L1PA2 6032 - 454 506 196248 52 chain 38973 chrX 155270560 + 120701372 120701799 L1PA2 6032 + 5605 6032 70776 427 chain 22670 chrX 155270560 + 120706714 120707020 L1MA3 4352 + 2337 2646 117212 74 0 1 107 0 3 65 1 0 59 chain 5570 chrX 155270560 + 120755401 120755468 MLT2A1 477 + 288 355 189379 67 chain 45693 chrX 155270560 + 120793327 120793842 L1PA4 6152 - 9 525 62320 330 0 1 185 chain 23387 chrX 155270560 + 120805187 120805465 AluSc 308 + 16 294 113717 278 chain 14324 chrX 155270560 + 120819958 120820549 L1MB7 1623 - 29 571 143478 27 48 35 14 3 0 19 13 8 13 2 1 12 56 38 5 1 0 32 201 193 12 2 0 13 0 3 36 1 0 81 chain 120936 chrX 155270560 + 120824219 120825557 L1PA3long 6157 - 0 1338 30712 1338 chain 96353 chrX 155270560 + 120825557 120826601 L1PA3long 6157 + 3780 4824 37662 1044 chain 221386 chrX 155270560 + 120829358 120831752 L1PA2 6032 - 795 3189 17789 2394 chain 69964 chrX 155270560 + 120831752 120832526 L1PA2 6032 + 5255 6029 48113 774 chain 322873 chrX 155270560 + 120843195 120849466 L1PA11 4918 - 401 4911 12489 9 4 0 20 1 0 12 3 1 68 29 27 33 1 0 5 0 1 4 12 6 131 19 2 33 9 4 8 0 6 234 8 6 177 0 1 188 2 0 220 0 1 17 16 0 3 0 17 17 0 9 170 52 24 38 0 3 302 0 1 84 3 1 93 10 0 189 0 1 80 7 11 20 0 1 26 1723 0 180 1 0 6 0 1 191 4 5 15 3 0 198 2 6 123 0 1 18 0 4 61 0 12 95 0 2 559 0 1 168 1 0 225 0 2 72 0 1 19 0 1 31 1 0 3 2 0 33 1 0 52 2 0 27 0 1 20 2 0 38 13 11 16 1 0 8 chain 148702 chrX 155270560 + 120845552 120847263 L1PA6 6164 - 3 1707 24785 5 5 0 152 2 1 170 0 1 520 1 0 751 1 0 104 chain 20692 chrX 155270560 + 120850912 120851257 THE1B 368 - 12 368 124995 42 10 8 4 0 1 99 10 8 25 1 0 67 37 46 6 0 6 44 chain 3666 chrX 155270560 + 120856576 120856622 L1M1 2793 + 2623 2668 212450 5 1 0 40 chain 18727 chrX 155270560 + 120861762 120861964 L1PA2 6032 - 820 1022 130333 202 chain 77356 chrX 155270560 + 120861964 120862808 L1PA2 6032 + 5195 6032 44798 826 7 0 11 chain 41679 chrX 155270560 + 120885679 120886234 MLT2A2 560 + 11 560 67054 123 19 12 58 0 1 355 chain 31268 chrX 155270560 + 120887312 120887667 L1PA5 6144 - 5 360 82047 355 chain 32915 chrX 155270560 + 120888062 120888509 MER4A1 472 - 0 470 79345 68 6 8 144 9 29 156 0 1 64 chain 31039 chrX 155270560 + 120889381 120889913 LTR4 552 - 1 534 82455 55 0 1 78 30 24 115 1 0 46 0 1 33 6 5 10 3 2 65 26 25 10 1 0 4 1 0 7 24 35 17 chain 20140 chrX 155270560 + 120899855 120900138 AluSp 311 + 11 289 126707 98 24 14 97 5 10 59 chain 80830 chrX 155270560 + 120914623 120915858 L1MA1 4479 - 328 1517 43258 9 1 0 35 2 0 29 1 0 126 3 0 5 1 0 88 1 0 13 2 0 8 10 9 74 1 0 21 2 0 20 1 0 138 7 6 49 4 1 6 0 1 124 10 1 77 12 8 38 4 0 12 4 2 72 4 0 21 2 0 173 2 0 23 chain 23869 chrX 155270560 + 120923570 120923945 MER4A1 472 + 74 472 111090 16 0 5 39 1 0 87 61 67 102 0 13 69 chain 374348 chrX 155270560 + 120931052 120935695 L1PA8A 6298 - 7 4669 10947 192 3 5 238 0 1 281 1 4 413 0 4 268 0 1 1012 0 1 207 9 11 33 0 2 176 0 3 47 14 1 208 0 2 501 6 8 17 0 15 75 5 2 61 3 0 759 1 0 4 0 1 109 chain 11954 chrX 155270560 + 120951141 120951488 L1PREC2 3366 - 307 614 152392 11 2 0 38 6 4 35 37 19 4 0 1 25 73 59 9 3 0 5 1 0 42 11 10 45 chain 4285 chrX 155270560 + 120951508 120951554 L1PA3long 6157 + 6111 6157 203420 46 chain 6994 chrX 155270560 + 120953173 120953393 L1PB4 2604 + 2427 2541 177505 48 6 7 48 107 0 11 chain 3296 chrX 155270560 + 120954138 120954875 L1PA4 6152 - 0 740 37828 13 0 3 226 1 0 97 0 1 400 chain 164327 chrX 155270560 + 120960640 120962424 L1PA2 6032 + 4245 6029 22765 1784 chain 3367 chrX 155270560 + 120974848 120975601 L1PA4 6152 - 816 1569 37828 753 chain 69786 chrX 155270560 + 120975601 120976381 L1PA4 6152 + 5363 6143 48328 780 chain 1189 chrX 155270560 + 120977734 120977825 MLT2A2 560 + 279 370 133604 91 chain 96808 chrX 155270560 + 120977841 120978930 L1PA5 6144 - 0 1089 37611 15 0 1 751 1 0 322 chain 2103 chrX 155270560 + 120978931 120979092 MLT2A2 560 + 388 560 133604 14 0 11 147 chain 102831 chrX 155270560 + 120991604 120993117 L1PBa 3878 - 2294 3778 36044 118 3 1 46 0 4 99 0 3 487 1 0 57 5 23 217 6 5 47 11 12 16 36 34 5 0 2 170 3 1 25 1 0 49 65 17 46 chain 4654 chrX 155270560 + 121010158 121010248 MER2 342 + 147 227 199020 25 4 5 17 1 0 19 10 0 14 chain 557170 chrX 155270560 + 121011217 121017370 L1PA3long 6157 + 13 6157 594 513 4 0 196 4 0 215 4 0 300 3 0 169 0 5 4302 3 0 389 0 4 51 chain 75238 chrX 155270560 + 121073119 121074169 MER11A 1151 + 0 1133 45906 78 0 8 104 18 17 23 1 0 64 0 11 377 6 9 11 3 4 37 0 4 69 0 2 16 2 60 96 9 8 34 0 1 52 7 6 21 1 0 21 chain 194866 chrX 155270560 + 121095243 121098549 MER4-int 2692 + 36 2692 19593 42 0 6 8 12 10 12 1 3 292 0 19 149 700 0 119 0 2 27 4 1 52 0 13 112 0 1 7 1 0 30 0 1 110 9 1 151 0 1 83 0 19 101 0 1 32 11 7 183 1 0 259 0 2 217 0 1 93 1 3 272 2 0 5 0 1 208 chain 38043 chrX 155270560 + 121108398 121108916 MLT2A2 560 + 0 546 72070 168 11 27 207 0 11 68 8 9 56 chain 10142 chrX 155270560 + 121108930 121109060 HERVL-int 5654 + 0 130 159891 130 chain 468062 chrX 155270560 + 121131969 121138529 L1PA8A 6298 - 28 6257 8108 522 1 0 135 0 5 36 0 2 674 0 1 17 5 8 512 3 4 86 7 8 381 0 1 176 10 5 206 307 0 38 1 4 57 7 1 399 7 8 11 0 4 350 0 1 19 0 1 21 20 21 38 10 9 38 1 5 766 17 31 23 0 1 21 1 0 115 7 5 8 0 1 9 6 7 111 1 0 235 7 1 49 0 4 639 10 8 10 1 0 15 2 0 79 6 0 18 4 3 41 1 0 7 25 21 9 1 0 7 2 1 13 37 31 19 2 1 9 2 1 14 24 14 17 3 0 23 32 21 17 chain 111507 chrX 155270560 + 121161855 121163162 L1PA7 6471 - 5 1313 33809 7 3 0 146 1 2 4 1 0 679 1 5 465 chain 90372 chrX 155270560 + 121165877 121167275 L1PB1 5432 - 19 1340 39514 9 1 0 12 1 0 22 1 0 22 27 22 14 9 0 16 2 0 15 1 0 45 1 0 17 1 0 51 2 0 9 9 5 10 1 0 6 1 0 12 75 32 276 0 9 15 9 0 82 1 0 86 3 0 534 chain 19414 chrX 155270560 + 121178168 121178550 L1PBb 2709 - 70 412 128907 4 1 0 10 2 0 6 1 0 7 1 0 9 1 0 50 1 0 34 58 41 52 9 0 5 1 0 6 6 0 118 chain 512660 chrX 155270560 + 121194608 121201382 L1PA7 6471 + 19 6464 5905 384 0 2 262 1 0 499 18 12 90 33 28 1130 0 3 203 15 0 151 0 1 89 0 1 97 3 0 404 5 4 17 315 1 121 5 6 136 0 1 312 15 16 392 18 19 173 1 0 4 0 2 95 0 4 400 0 2 6 2 0 538 6 2 465 0 4 369 chain 36256 chrX 155270560 + 121206204 121206601 L1PA3long 6157 - 0 399 74555 266 0 2 131 chain 23565 chrX 155270560 + 121207812 121208093 THE1A-int 1579 + 1298 1579 112772 281 chain 8560 chrX 155270560 + 121208942 121209081 L1MA3 4352 - 4191 4330 167961 5 1 0 65 6 8 46 1 0 15 chain 75908 chrX 155270560 + 121217885 121218722 L1PA3long 6157 + 5320 6157 45535 837 chain 35222 chrX 155270560 + 121222815 121223200 L1PA3long 6157 + 5772 6157 75897 385 chain 25640 chrX 155270560 + 121230585 121230908 L1PBa 3878 - 1235 1557 101540 76 1 0 197 1 0 5 0 1 43 chain 167972 chrX 155270560 + 121234202 121236605 L1PB1 5432 + 2299 5391 22288 176 0 1 4 1 0 48 9 8 75 3 8 6 5 0 197 1 0 5 0 1 14 1 0 44 0 16 148 3 4 351 1 0 85 0 1 230 0 4 327 54 37 65 0 1 189 0 1 47 1 714 10 3 0 22 1 0 4 36 29 19 0 5 17 1 0 8 2 1 15 1 0 45 1 0 10 76 59 20 1 0 21 chain 79046 chrX 155270560 + 121245081 121246115 L1PBa 3878 - 1379 2423 44030 22 1 8 59 0 4 200 2 9 471 0 1 110 21 12 148 chain 115115 chrX 155270560 + 121267723 121270003 THE1C-int 1605 + 43 1590 32751 60 19 17 260 0 1 64 0 7 292 1 0 121 0 5 270 3 5 50 771 21 62 0 1 82 1 2 77 0 1 30 0 1 26 0 1 91 chain 542504 chrX 155270560 + 121273855 121280040 L1PA4 6152 + 0 6152 2426 528 4 0 1253 0 1 537 0 1 24 10 1 1804 0 3 13 0 1 121 0 2 418 16 1 1059 1 0 212 20 11 150 3 0 12 chain 8948 chrX 155270560 + 121282632 121282745 MSTD-int 1705 + 1545 1657 165882 93 1 0 19 chain 102563 chrX 155270560 + 121294433 121295582 L1PA3long 6157 - 0 1151 36068 149 0 1 183 0 1 817 chain 166287 chrX 155270560 + 121295582 121297421 L1PA3long 6157 + 3166 5011 22486 85 7 12 910 0 1 837 chain 3419 chrX 155270560 + 121304296 121304783 L1PA3long 6157 - 5 496 43972 50 0 4 437 chain 109449 chrX 155270560 + 121307648 121309048 L1PA8 5853 - 0 1408 34330 93 1 0 19 2 1 47 13 11 74 2 0 44 1 0 239 0 8 214 1 0 64 28 30 21 0 4 34 0 1 393 0 1 110 chain 23693 chrX 155270560 + 121314724 121314983 L1PA3long 6157 - 237 496 112067 259 chain 4121 chrX 155270560 + 121314984 121315571 L1PA3long 6157 - 496 1083 43972 587 chain 111289 chrX 155270560 + 121325799 121327296 L1P3 4156 - 25 1556 33861 18 9 6 41 7 0 60 2 0 422 0 2 19 11 20 23 0 1 36 5 6 64 1 20 569 3 15 178 0 2 29 chain 84810 chrX 155270560 + 121332764 121333853 HERVL-int 5654 - 0 1099 41589 204 3 4 7 0 4 69 0 2 417 0 1 4 1 0 39 4 7 341 chain 15220 chrX 155270560 + 121341425 121341604 L1PA7 6471 - 2 185 140717 54 0 4 125 chain 40543 chrX 155270560 + 121355856 121356307 LTR7 482 + 0 482 68525 264 0 31 187 chain 299013 chrX 155270560 + 121356309 121359928 HERVH-int 3825 + 0 3825 13477 386 17 17 106 1 0 23 5 0 38 1 0 10 1 0 24 1 14 13 24 0 5 0 20 42 2 1 12 21 0 18 2 1 49 1 0 235 0 3 206 15 0 462 4 31 291 0 4 1109 8 218 487 chain 39917 chrX 155270560 + 121361187 121361638 LTR7 482 + 0 482 69435 264 0 31 187 chain 364277 chrX 155270560 + 121365171 121370854 L1PB1 5432 - 19 5372 11248 9 1 0 13 1 0 21 2 1 23 2 0 14 8 5 17 68 52 21 6 5 11 2 1 28 1 6 16 3 1 10 17 12 9 1 0 21 79 17 61 3 2 4 0 1 324 1 0 74 0 3 3 6 0 100 0 2 308 6 13 238 14 16 98 1 9 101 7 10 242 0 4 10 32 4 131 0 7 208 334 0 507 2 37 86 1 0 156 11 9 102 1 44 183 4 20 137 4 0 28 5 6 186 8 9 5 0 1 4 1 0 210 16 0 146 0 4 483 0 13 108 50 51 39 2 0 5 12 14 87 6 9 24 0 1 12 13 10 151 31 33 147 chain 45917 chrX 155270560 + 121388150 121388669 L1PA3long 6157 - 2437 2958 61949 371 0 2 148 chain 220122 chrX 155270560 + 121388669 121391101 L1PA3long 6157 + 3705 6142 17875 587 0 2 56 0 2 1474 0 1 315 chain 27844 chrX 155270560 + 121404258 121404568 AluYb9 318 + 13 315 93548 118 8 0 184 chain 11632 chrX 155270560 + 121410133 121410261 L1PA3long 6157 + 5764 5892 153768 128 chain 32188 chrX 155270560 + 121420954 121421354 L1PB 1623 - 349 749 80545 400 chain 12279 chrX 155270560 + 121422600 121422847 L1PB1 5432 + 5101 5322 151080 16 3 0 21 1 0 4 21 16 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 15 6 13 chain 458882 chrX 155270560 + 121428127 121434270 L1PA7 6471 - 16 5843 8446 37 1 5 15 5 1 47 1 0 30 1 2 19 0 1 117 0 1 334 6 7 136 6 5 38 0 2 41 0 3 136 0 5 351 0 1 41 11 4 1072 19 0 69 302 0 257 0 1 65 1 0 152 0 5 301 0 2 66 0 12 365 31 9 68 3 1 413 3 2 58 1 8 7 7 0 591 0 1 200 0 2 5 11 3 172 7 8 233 7 16 191 36 34 18 0 2 39 chain 88248 chrX 155270560 + 121439470 121440594 MER11B 1079 + 0 1074 40283 319 0 1 262 57 13 73 1 0 102 0 2 107 0 1 153 0 1 21 11 0 10 0 1 8 chain 8930 chrX 155270560 + 121441124 121441236 L1PA5 6144 + 6034 6141 165977 100 5 0 7 chain 295254 chrX 155270560 + 121464788 121468052 L1PA3long 6157 + 2892 6157 13684 795 0 1 2469 chain 209384 chrX 155270560 + 121469367 121472053 HERVL-int 5654 - 0 5654 18536 74 0 3 94 17 6 247 22 7 578 6 7 202 0 2 63 0 4 27 0 2981 681 0 1 78 32 32 317 0 2 139 1 0 7 0 1 101 chain 29968 chrX 155270560 + 121472053 121472495 MLT2A1 477 - 0 477 84921 37 3 41 168 2 1 26 5 6 18 0 1 9 4 1 87 22 21 61 chain 25968 chrX 155270560 + 121477977 121478344 L1PA8 5853 + 5493 5853 100143 71 1 0 37 9 7 68 6 5 19 9 8 32 2 1 19 1 0 93 chain 3976 chrX 155270560 + 121486965 121487011 MADE1 96 + 50 96 207743 46 chain 8569 chrX 155270560 + 121487109 121487208 L1PA3long 6157 + 6058 6157 167922 99 chain 59568 chrX 155270560 + 121507809 121508481 L1PA5 6144 - 9 679 53072 12 2 0 658 chain 88864 chrX 155270560 + 121508934 121509941 LTR13 1007 - 0 1007 40057 1007 chain 8626 chrX 155270560 + 121522502 121522752 LTR12D 1347 - 595 760 167608 46 133 48 71 chain 3208 chrX 155270560 + 121522640 121522681 LTR12D 1347 - 689 730 209871 41 chain 178665 chrX 155270560 + 121528249 121530192 L1PA3long 6157 - 1739 3681 21108 423 1 0 1519 chain 158643 chrX 155270560 + 121530192 121531934 L1PA3long 6157 + 4411 6156 23497 1254 0 2 151 0 1 337 chain 41401 chrX 155270560 + 121538209 121538666 L1PA2 6032 + 5578 6031 67413 415 4 0 38 chain 4621 chrX 155270560 + 121580519 121580573 L1PBa 3878 + 165 218 199395 48 1 0 5 chain 12130 chrX 155270560 + 121582135 121582293 L1PBa 3878 + 1522 1683 151694 26 0 1 72 0 2 60 chain 15921 chrX 155270560 + 121582301 121582608 L1PB1 5432 + 5048 5326 138605 54 1 0 12 3 0 24 1 0 4 3 2 11 8 4 8 2 0 52 1 0 17 1 0 45 5 1 14 2 0 6 15 6 18 chain 5212 chrX 155270560 + 121605580 121605659 MADE1 96 - 1 96 192900 37 5 21 37 chain 45364 chrX 155270560 + 121613803 121614382 L1PA7 6471 - 4 602 62641 145 0 2 11 1 2 22 0 1 28 1 2 88 0 11 144 0 2 6 2 0 96 0 1 29 0 2 6 chain 26859 chrX 155270560 + 121614382 121614779 L1PA7 6471 + 5470 5882 96775 101 16 6 19 22 50 40 13 5 7 0 5 179 chain 89118 chrX 155270560 + 121616044 121617150 MER11B 1079 + 2 1079 39955 262 3 0 504 6 0 54 18 0 243 5 3 11 chain 37045 chrX 155270560 + 121625189 121625744 L1PB2 3958 - 120 661 73465 63 2 1 20 8 6 67 1 0 64 1 0 70 17 20 12 1 2 62 1 0 4 2 0 8 2 0 65 5 0 11 1 0 56 2 0 10 chain 363208 chrX 155270560 + 121626330 121633033 L1PA8 5853 - 3 4693 11284 20 0 1 16 0 4 49 1 0 16 5 4 52 1 0 8 1 0 72 2 0 44 1 0 476 0 1 73 5 8 7 0 1 64 0 1 11 1 21 8 20 0 65 1 0 4 0 1 196 22 23 264 1 0 289 1 4 180 1 0 397 10 12 587 5 8 705 2 0 42 0 1 70 0 96 68 0 2 329 2121 0 390 chain 29210 chrX 155270560 + 121630541 121630867 L1PA3long 6157 - 0 327 88002 147 0 1 179 chain 159409 chrX 155270560 + 121630867 121632633 L1PA3long 6157 + 4058 5827 23413 836 1 0 410 0 4 519 chain 3700 chrX 155270560 + 121660898 121660993 L1PA3long 6157 + 3062 3157 211941 29 19 19 26 0 1 4 1 0 16 chain 115109 chrX 155270560 + 121661076 121662353 L1PA3long 6157 - 1739 3026 32753 54 0 8 227 0 1 424 0 1 572 chain 156570 chrX 155270560 + 121662353 121664089 L1PA3long 6157 + 4421 6157 23788 1736 chain 16703 chrX 155270560 + 121664696 121664922 L1MA1 4479 + 2547 2771 136395 55 1 0 65 2 1 103 chain 183392 chrX 155270560 + 121680540 121682560 L1PA3long 6157 - 1 2021 20630 2020 chain 211742 chrX 155270560 + 121682560 121684911 L1PA3long 6157 + 1781 4140 18379 584 0 1 810 1 2 542 0 3 173 0 2 48 0 1 193 chain 7709 chrX 155270560 + 121711998 121712092 L1PA15 4387 - 1969 2063 172876 94 chain 7762 chrX 155270560 + 121727793 121728124 MLT1C 463 - 0 331 172531 37 36 39 34 173 170 51 chain 21530 chrX 155270560 + 121730183 121730471 AluSg7 307 + 11 300 122047 97 1 2 21 0 1 6 18 17 145 chain 319903 chrX 155270560 + 121743409 121747415 HERVL-int 5654 + 0 4443 12600 587 1 2 66 3 0 70 1 0 4 0 1 307 0 2 660 0 3 378 2 11 342 3 0 514 0 1 473 0 429 100 2 0 493 chain 453152 chrX 155270560 + 121749728 121755300 L1PA7 6471 - 10 5612 8644 142 1 2 359 0 1 239 5 11 10 1 0 73 0 2 772 1 7 25 2 0 545 0 10 215 2 12 34 1 0 241 2 1 171 13 17 86 1 2 381 1 5 73 0 2 315 0 4 63 21 0 442 0 1 852 7 1 7 0 6 47 0 1 19 15 15 283 0 3 105 chain 11293 chrX 155270560 + 121755348 121755480 L1PA7 6471 + 6336 6468 155077 132 chain 58785 chrX 155270560 + 121789222 121789939 SVA_A 1864 + 1177 1864 53532 60 8 5 73 40 12 487 0 1 49 chain 388807 chrX 155270560 + 121807138 121812496 L1PB1 5432 + 77 5420 10491 67 0 1 65 9 11 145 0 2 34 7 6 152 6 33 169 1 0 119 0 1 6 1 0 198 5 1 164 3 1 64 6 5 76 14 0 204 4 9 113 16 12 288 0 8 464 49 49 297 3 1 166 1 0 717 12 7 230 0 1 335 0 1 10 0 1 197 0 2 100 11 12 32 0 1 158 4 3 286 0 1 11 1 0 25 1 0 9 19 14 6 2 0 50 9 8 12 16 15 29 1 0 15 3 0 7 35 23 20 2 0 24 1 0 21 1 0 13 1 0 16 chain 47520 chrX 155270560 + 121817850 121818369 L1PA3long 6157 - 0 521 60828 112 0 1 315 0 1 92 chain 27210 chrX 155270560 + 121822879 121823244 THE1B 368 + 0 368 95562 18 2 0 18 1 6 130 2 1 25 0 2 92 2 1 75 chain 22324 chrX 155270560 + 121823597 121824073 L1PB3 3668 + 3143 3554 118804 54 7 9 85 2 1 22 19 28 39 22 21 79 74 4 11 1 0 7 1 0 25 3 1 25 chain 31372 chrX 155270560 + 121828112 121828461 L1PA4 6152 - 0 349 81870 349 chain 59109 chrX 155270560 + 121840382 121841081 L1PA7 6471 + 5762 6461 53324 61 1 2 130 1 0 352 0 7 9 7 0 138 chain 19772 chrX 155270560 + 121862854 121863092 L1PA6 6164 + 5913 6152 127900 97 1 2 140 chain 104136 chrX 155270560 + 121867212 121868635 L1PA10 4194 + 2718 4161 35710 6 3 0 82 0 10 21 0 3 72 2 5 34 8 9 69 1 0 92 0 2 432 5 9 221 0 3 294 1 0 10 24 24 34 1 0 11 chain 29142 chrX 155270560 + 121889112 121889508 THE1D-int 1627 - 0 404 88357 9 0 1 19 4 7 14 1 0 7 1 6 341 chain 44583 chrX 155270560 + 121889508 121890020 MER9a2 513 - 0 513 63496 473 0 1 39 chain 80167 chrX 155270560 + 121933928 121934981 MER11C 1089 + 0 1073 43522 246 0 9 35 1 4 23 0 4 65 1 0 135 0 1 4 1 0 8 43 42 95 0 1 18 0 4 5 1 0 38 0 1 127 0 1 53 1 0 145 0 1 8 chain 108700 chrX 155270560 + 121938019 121939319 L1PA6 6164 + 4830 6162 34510 58 0 9 7 0 5 387 0 4 17 2 0 76 7 14 382 0 7 207 1 2 78 0 1 78 chain 7136 chrX 155270560 + 121939707 121939815 L1M3 994 + 222 328 176499 75 4 3 11 1 0 17 chain 2759 chrX 155270560 + 121939954 121939987 MLT2A2 560 - 506 540 227969 4 0 1 29 chain 27879 chrX 155270560 + 121939987 121940454 MLT2A2 560 + 47 560 93423 133 2 0 13 2 5 9 5 7 82 18 50 17 16 12 31 8 20 79 0 1 7 6 4 33 0 4 6 chain 31181 chrX 155270560 + 121947350 121947814 LTR2B 499 - 0 481 82195 182 6 1 7 0 5 40 0 5 11 6 1 81 29 41 7 0 7 46 2 0 47 chain 31649 chrX 155270560 + 121968840 121969309 MLT2A1 477 + 0 477 81406 142 0 1 26 0 4 151 1 0 4 0 1 25 75 78 45 chain 106625 chrX 155270560 + 121971057 121972266 L1PA5 6144 + 4917 6132 35085 380 1 5 61 0 1 637 0 1 130 chain 17115 chrX 155270560 + 121976129 121976323 L1PA6 6164 - 16 210 135268 194 chain 10652 chrX 155270560 + 121976323 121976448 L1P3 4156 + 3094 3220 157597 32 0 1 93 chain 370361 chrX 155270560 + 122014815 122020104 L1PB1 5432 + 29 5404 11082 277 10 9 171 86 87 55 10 11 117 1 0 625 0 3 6 2 1 44 23 9 157 13 1 96 0 1 397 5 2 15 1 3 347 0 124 99 0 1 133 2 1 11 0 2 52 0 3 101 1 0 17 3 1 109 0 1 82 1 0 221 19 29 276 7 8 532 1 4 4 1 0 139 0 1 155 4 5 54 7 4 17 0 7 21 0 1 29 1 0 96 1 8 92 0 2 198 26 11 24 8 6 14 5 1 9 2 0 52 2 1 15 1 0 46 2 1 13 2 0 7 15 6 17 3 1 5 1 0 11 6 4 18 6 5 22 1 0 12 chain 17037 chrX 155270560 + 122020665 122020863 L1PA5 6144 + 5945 6143 135500 198 chain 10250 chrX 155270560 + 122022008 122022131 L1PA4 6152 + 6032 6152 159368 114 3 0 6 chain 161420 chrX 155270560 + 122042365 122045188 L1PA14 3548 + 67 3465 23133 6 1 0 10 12 7 58 2 0 59 37 31 25 9 7 30 2 0 27 14 18 152 134 5 99 0 1 36 0 1 18 3 5 42 6 7 171 8 10 51 0 37 98 27 13 29 4 14 184 5 4 131 3 0 5 126 841 40 13 13 185 1 0 140 6 5 234 1 0 4 0 1 15 33 29 36 9 5 102 10 6 17 2 0 5 2 1 79 10 9 64 0 1 41 1 0 12 5 1 35 4 2 8 1 0 9 1 0 17 1 0 40 6 0 10 chain 8546 chrX 155270560 + 122042838 122042941 L1PA14 3548 + 856 959 168041 103 chain 20435 chrX 155270560 + 122049303 122049989 L1PA8 5853 - 0 683 16374 93 1 0 19 2 1 58 1 0 74 2 0 43 2 1 49 6 7 163 0 2 173 chain 426334 chrX 155270560 + 122049999 122054857 L1PA5 6144 + 419 6131 9389 180 0 1 158 0 107 568 1 0 633 0 3 125 0 2 643 0 1 73 0 3 388 0 737 746 0 2 504 1 0 838 chain 80310 chrX 155270560 + 122054916 122057612 L1PA8 5853 - 683 3371 16374 92 0 2 9 0 1 57 2 0 3 1 0 90 2 0 148 0 1 169 5 0 29 12 6 219 4 3 359 3 2 281 0 3 213 0 1 447 0 1 103 22 23 426 chain 9955 chrX 155270560 + 122077562 122077679 L1P1 4361 - 33 149 160804 23 1 0 93 chain 176869 chrX 155270560 + 122083878 122086549 L1MA1 4479 - 327 2974 21264 10 1 0 30 7 5 28 7 6 56 2 1 47 0 1 11 8 5 5 1 0 88 1 0 14 2 0 19 1 0 71 1 0 16 2 0 25 1 0 65 19 18 88 1 0 24 2 0 130 3 0 123 5 1 11 6 5 30 0 4 59 16 13 158 2 0 27 1 0 92 2 0 63 6 5 27 3 1 100 1 0 64 17 15 108 3 0 22 1 8 44 8 11 8 0 7 6 6 0 39 9 10 158 1 4 34 7 6 32 6 4 48 0 1 53 0 1 32 5 4 13 6 10 423 chain 97392 chrX 155270560 + 122086922 122088249 L1PB2 3958 - 120 1443 37455 12 0 4 47 1 0 22 2 0 74 2 1 61 1 0 70 1 3 51 1 2 40 2 0 13 0 2 62 3 0 67 2 0 102 2 1 280 1 0 61 8 9 339 chain 26360 chrX 155270560 + 122105597 122105971 THE1C 375 + 0 375 98573 181 25 26 129 1 2 11 1 0 26 chain 53156 chrX 155270560 + 122105971 122106701 THE1C-int 1605 + 0 737 56920 432 13 20 43 6 7 22 9 8 205 chain 16593 chrX 155270560 + 122113356 122113705 L1PB1 5432 - 67 385 136686 19 2 0 14 1 0 4 3 1 16 9 0 15 4 1 15 2 1 42 1 0 16 3 2 52 2 0 8 7 3 10 1 0 12 1 0 17 21 19 46 1 0 5 chain 83411 chrX 155270560 + 122132340 122133442 L1PB1 5432 - 871 1983 42153 46 4 7 119 0 1 99 1 4 213 5 16 142 1 0 22 0 3 5 3 0 150 8 0 189 0 1 95 chain 16914 chrX 155270560 + 122133442 122133674 L1PB1 5432 + 4555 4791 135021 74 7 10 34 1 2 116 chain 21055 chrX 155270560 + 122133693 122133974 L1PB1 5432 + 4817 5100 123710 197 4 6 80 chain 10485 chrX 155270560 + 122133974 122134195 L1PB1 5432 + 5103 5296 158309 11 17 0 20 1 0 10 1 0 13 6 2 9 2 0 52 18 16 46 1 0 14 chain 5137 chrX 155270560 + 122134239 122134341 L1PB1 5432 + 5327 5423 193703 5 1 0 14 2 0 24 1 0 22 2 1 11 7 6 13 chain 256457 chrX 155270560 + 122138725 122141552 L1PA4 6152 - 73 2900 15910 2827 chain 11732 chrX 155270560 + 122144264 122144425 L1PA10 4194 + 4007 4161 153336 75 3 0 34 8 5 29 1 0 11 chain 28339 chrX 155270560 + 122148593 122148899 AluYg6 310 + 0 301 91801 295 5 0 6 chain 57351 chrX 155270560 + 122151760 122152606 L1PA15 4387 - 260 1077 54313 23 1 0 65 1 0 4 3 4 99 1 0 40 3 1 64 5 0 14 2 0 227 13 1 19 3 5 195 3 5 44 10 0 7 chain 296226 chrX 155270560 + 122155990 122159926 L1PB1 5432 + 1448 5408 13631 89 0 4 35 0 7 120 0 1 130 3 1 91 0 1 337 2 5 129 0 1 338 0 1 148 0 3 60 5 5 54 1 0 139 0 1 555 1 2 5 1 0 281 0 1 304 3 0 233 0 1 92 1 2 187 3 4 288 96 118 16 2 1 42 1 0 8 28 20 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 4105 chrX 155270560 + 122168887 122168937 L1MA5A 2387 + 2236 2286 205872 50 chain 78916 chrX 155270560 + 122184532 122185485 L1PA7 6471 - 3 961 44098 7 2 0 6 0 3 320 1 2 426 1 4 190 chain 29986 chrX 155270560 + 122185512 122185833 AluYb9 318 + 0 318 84852 132 3 0 186 chain 98027 chrX 155270560 + 122185850 122187031 L1PA7 6471 + 5191 6466 37270 106 0 1 29 0 6 27 0 79 194 0 1 66 1 4 140 0 1 285 1 2 324 0 2 8 chain 296859 chrX 155270560 + 122189733 122192979 L1PA3long 6157 + 2905 6150 13597 2402 1 0 843 chain 75674 chrX 155270560 + 122201388 122202360 L1PA13 3608 + 2524 3485 45673 608 0 1 27 1 0 114 2 0 61 1 0 55 9 6 47 9 5 20 1 0 17 chain 83376 chrX 155270560 + 122235566 122236578 L1PA7 6471 - 3 1010 42167 152 7 8 687 25 19 141 chain 231428 chrX 155270560 + 122256975 122260371 L1PA13 3608 + 86 3497 17233 21 9 7 23 7 4 22 1 0 14 3 0 10 0 3 10 14 7 10 4 1 19 17 19 29 1 0 6 1 0 92 125 127 6 2 0 17 2 1 96 2 0 104 0 1 6 0 2 123 0 6 88 0 1 123 0 1 68 1 23 285 0 5 46 1 5 380 3 0 64 0 4 370 12 9 70 2 1 44 1 0 227 1 0 229 0 8 205 1 0 32 1 0 113 2 0 62 1 0 23 1 0 22 5 4 12 2 0 47 9 5 20 1 0 20 0 3 6 chain 95233 chrX 155270560 + 122263603 122264770 L1P3 4156 + 406 1573 38025 131 4 0 139 1 0 534 0 4 67 1 2 290 chain 28403 chrX 155270560 + 122266368 122266714 MER48 407 + 0 346 91564 30 0 1 4 1 0 311 chain 70611 chrX 155270560 + 122266740 122267559 L1PA7 6471 + 5630 6467 48110 229 0 3 231 0 1 42 0 1 136 0 13 181 chain 22326 chrX 155270560 + 122288494 122288751 AluSp 311 + 11 269 118797 122 0 1 135 chain 149084 chrX 155270560 + 122295881 122297994 L1PB1 5432 - 17 2091 24742 11 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 25 12 13 7 6 40 1 0 16 2 1 53 2 0 9 6 2 9 1 0 13 97 31 106 1 2 138 0 1 172 7 6 5 0 1 46 3 0 80 2 1 39 0 1 178 0 1 370 1 0 98 0 1 48 0 1 80 1 0 259 0 58 70 chain 40681 chrX 155270560 + 122297997 122298503 L1PB1 5432 + 2799 3310 68322 87 0 3 142 1 0 4 0 1 205 0 1 62 0 1 5 chain 545594 chrX 155270560 + 122416798 122423279 L1PA7 6471 + 0 6467 1998 402 0 1 278 2 1 658 0 1 319 8 9 19 6 5 660 1 2 277 16 0 917 7 11 59 0 1 1889 0 1 112 6 4 84 2 0 749 2 0 8 chain 3682 chrX 155270560 + 122428004 122428057 MIR 256 - 103 153 212192 5 3 0 45 chain 162330 chrX 155270560 + 122433011 122435260 L1PA13 3608 - 165 2471 23019 37 0 1 9 2 0 9 2 0 47 4 3 64 2 0 113 1 0 31 1 0 337 1 0 53 5 7 46 1 0 63 0 2 161 6 7 205 20 0 128 3 106 26 0 4 39 2 0 9 79 49 28 0 4 129 0 1 62 1 0 499 1 4 23 chain 7883 chrX 155270560 + 122450625 122450754 Tigger3a 397 + 0 178 171790 75 18 67 36 chain 27674 chrX 155270560 + 122450780 122451133 THE1A 353 - 0 353 94136 240 5 4 24 0 1 84 chain 131768 chrX 155270560 + 122451138 122452695 THE1A-int 1579 - 6 1579 27682 342 0 13 642 2 0 177 4 9 390 chain 10554 chrX 155270560 + 122500029 122500157 MER41B 635 - 507 635 158032 128 chain 27792 chrX 155270560 + 122500164 122500584 MER41-int 2638 - 0 412 93729 37 13 6 43 0 1 24 16 17 21 21 18 245 chain 188860 chrX 155270560 + 122506732 122509259 L1PA6 6164 - 2 2472 20161 5 3 0 5 3 0 42 0 17 498 0 2 91 0 10 177 1 0 949 0 4 253 226 143 74 26 30 6 4 0 164 chain 118250 chrX 155270560 + 122513505 122514830 L1PA4 6152 - 9 1335 31707 139 0 1 619 1 0 492 0 1 74 chain 38541 chrX 155270560 + 122518740 122519658 L1PREC2 3366 - 153 952 71380 17 242 153 36 3 1 35 22 8 10 5 2 25 0 1 4 4 1 14 12 7 11 38 38 43 9 8 47 2 0 4 1 0 36 1 0 293 0 1 4 chain 67634 chrX 155270560 + 122548278 122549052 L1PA6 6164 - 2 778 49393 158 0 1 535 0 1 81 chain 10448 chrX 155270560 + 122574607 122574785 L1PA14 3548 - 106 273 158501 27 2 0 17 1 0 5 1 0 15 4 2 33 5 1 10 1 0 57 chain 8997 chrX 155270560 + 122582413 122582597 MER3 215 - 5 203 165614 44 21 0 10 17 43 28 0 2 7 2 0 43 0 9 12 chain 55788 chrX 155270560 + 122586773 122587402 L1PA5 6144 + 5517 6144 55251 27 0 1 22 3 0 577 chain 8343 chrX 155270560 + 122617160 122617311 MER33 330 - 35 177 169156 10 13 0 23 8 14 7 2 0 88 chain 33547 chrX 155270560 + 122632351 122632833 L1PA15 4387 - 1345 1840 78321 11 2 1 47 0 13 87 4 7 43 2 0 86 17 14 12 0 3 171 chain 58862 chrX 155270560 + 122639827 122640748 L1MA2 4263 + 3204 4113 53480 156 0 3 83 8 10 90 52 49 63 17 16 128 7 4 139 22 20 93 7 0 47 1 0 8 chain 139248 chrX 155270560 + 122641165 122642756 L1PA5 6144 + 4511 6143 26258 287 5 0 542 1 6 32 0 41 724 chain 73237 chrX 155270560 + 122655002 122655796 L1PA3long 6157 - 0 794 46910 794 chain 28982 chrX 155270560 + 122655796 122656110 L1PA3long 6157 + 5056 5370 89087 314 chain 3780 chrX 155270560 + 122658554 122658605 L1MB3 1562 - 1502 1552 210658 39 2 1 10 chain 288947 chrX 155270560 + 122663462 122667300 L1PA11 4918 - 354 4193 14090 10 1 0 15 64 44 7 1 0 13 3 1 58 26 23 62 1 0 515 1 0 4 0 1 37 1 4 45 1 0 35 1 0 141 0 1 517 3 1 311 0 15 339 0 3 113 2 1 13 1 0 60 1 3 21 0 3 41 2 0 5 12 14 18 0 1 255 4 1 194 2 1 199 0 3 113 5 6 61 0 2 88 0 3 129 6 7 27 7 8 247 chain 30494 chrX 155270560 + 122669492 122669845 L1PA5 6144 + 5785 6140 83442 199 0 1 9 0 1 145 chain 7647 chrX 155270560 + 122680921 122681029 L1PB4 2604 + 2432 2548 173246 16 5 13 87 chain 185116 chrX 155270560 + 122681774 122683974 HERVL-int 5654 + 3433 5646 20491 11 1 0 74 6 0 184 0 16 70 8 1 519 0 1 446 5 11 459 3 0 119 0 7 295 chain 32706 chrX 155270560 + 122683974 122684371 MLT2A1 477 + 3 401 79677 168 4 1 7 0 1 24 0 1 178 0 2 16 chain 202084 chrX 155270560 + 122699988 122702406 L1PA7 6471 + 4036 6467 19059 332 2 1 205 1 0 4 0 1 89 0 4 52 2 1 887 0 3 33 5 4 48 0 2 156 0 9 592 2 0 8 chain 197962 chrX 155270560 + 122704326 122707064 L1PBa 3878 + 29 2723 19360 10 2 0 8 4 1 12 3 0 3 1 0 16 4 0 6 1 0 5 2 0 10 2 1 38 48 12 6 3 0 6 1 0 47 0 4 20 2 0 124 0 10 90 26 38 26 1 0 241 2 3 91 0 2 101 27 28 458 0 2 17 4 12 137 7 0 845 0 1 70 11 0 136 0 1 32 9 1 23 chain 467652 chrX 155270560 + 122707672 122713817 L1PA8 5853 + 50 5853 8124 22 2 0 6 5 4 13 34 13 84 7 5 6 0 1 96 20 8 326 0 6 10 7 1 161 0 2 316 0 20 143 1 2 724 15 0 110 0 3 307 302 0 384 0 1 46 3 1 43 7 6 76 0 1 132 0 1 203 2 0 60 0 1 73 12 0 67 2 1 267 0 2 100 0 2 78 7 9 17 6 5 319 1 0 524 0 5 143 1 0 3 1 0 555 1 0 44 2 0 70 17 15 46 6 5 16 1 0 93 chain 24359 chrX 155270560 + 122710100 122710383 AluYk4 311 + 27 310 108328 283 chain 55378 chrX 155270560 + 122721702 122722325 SVA_B 1603 + 908 1603 55474 12 4 0 49 1 0 5 0 77 552 chain 6002 chrX 155270560 + 122733127 122733249 L1PB1 5432 - 10 124 185219 18 1 0 12 1 0 22 1 0 24 29 24 14 chain 525985 chrX 155270560 + 122781860 122788257 L1PA7 6471 + 0 6461 4588 314 1 0 4 3 5 75 7 1 8 1 2 25 8 7 210 1 0 576 0 4 61 7 16 261 0 1 366 1 0 553 2 0 31 0 2 117 0 2 60 1 0 450 0 8 325 1 2 5 1 0 58 0 4 27 0 1 155 8 5 257 0 19 57 1 0 595 0 8 266 0 2 294 0 1 83 1 0 10 1 0 143 0 6 84 1 0 58 0 4 72 2 3 155 0 9 594 chain 5014 chrX 155270560 + 122794643 122794707 L1MA4A 3247 + 3068 3131 194981 39 1 0 24 chain 51124 chrX 155270560 + 122797474 122798058 L1PA5 6144 - 1 587 58234 267 0 2 317 chain 49066 chrX 155270560 + 122798058 122798620 L1PA5 6144 + 4984 5551 59700 159 0 1 143 0 1 101 1 4 158 chain 24467 chrX 155270560 + 122811742 122812117 Tigger3 1187 - 627 1000 107727 7 2 0 10 7 6 136 0 3 45 0 4 46 6 1 15 5 6 68 8 6 20 chain 83590 chrX 155270560 + 122813497 122814482 LTR5_Hs 974 + 0 974 42078 283 14 0 539 6 12 36 3 0 104 chain 11607 chrX 155270560 + 122816889 122817101 Tigger4a 237 - 0 236 153867 57 2 0 28 4 11 46 0 3 19 3 4 15 24 39 14 chain 15858 chrX 155270560 + 122817450 122817638 AluSp 311 - 14 200 138782 84 3 1 101 chain 9088 chrX 155270560 + 122853068 122853222 L1MB1 2102 + 1431 1593 165127 35 0 3 22 29 34 68 chain 29904 chrX 155270560 + 122855948 122856287 L1PA8 5853 + 5225 5564 85079 339 chain 3685 chrX 155270560 + 122856288 122856333 L1PA8 5853 + 5564 5608 212154 32 1 0 12 chain 17541 chrX 155270560 + 122856335 122856578 L1PA8 5853 + 5608 5847 134153 73 1 0 6 2 1 52 2 1 19 2 1 86 chain 21231 chrX 155270560 + 122864550 122864810 AluSc8 310 + 38 296 123100 94 0 3 151 5 0 10 chain 133495 chrX 155270560 + 122867343 122868845 SVA_D 2077 + 0 2075 27322 13 1 0 12 1 0 76 0 3 502 17 15 207 0 574 673 chain 31950 chrX 155270560 + 122869169 122869539 L1PA5 6144 + 5761 6140 80941 234 1 10 135 chain 26430 chrX 155270560 + 122891788 122892145 THE1B 368 + 0 368 98306 44 1 16 136 3 1 97 2 0 74 chain 121349 chrX 155270560 + 122892163 122893706 THE1B-int 1605 + 28 1599 30579 91 5 4 309 16 41 673 0 2 217 0 2 232 chain 25032 chrX 155270560 + 122893712 122894069 THE1B 368 + 0 368 104627 39 0 15 111 8 7 24 3 1 43 0 4 5 3 0 44 2 0 75 chain 27647 chrX 155270560 + 122946050 122946361 AluYk4 311 + 0 308 94220 123 3 0 185 chain 6727 chrX 155270560 + 122950552 122950630 LTR12F 595 + 402 480 179500 78 chain 30631 chrX 155270560 + 122952874 122954074 LTR9B 643 - 14 605 83153 25 10 9 48 322 0 37 16 21 35 33 35 7 0 1 78 1 0 29 0 1 35 18 28 30 10 9 12 2 3 51 0 1 17 323 18 61 chain 10884 chrX 155270560 + 122955773 122955908 MER51B 395 + 66 207 156643 31 0 6 104 chain 25199 chrX 155270560 + 122961632 122961933 AluSp 311 + 7 306 103748 63 1 0 62 2 0 44 0 1 129 chain 24870 chrX 155270560 + 122980059 122980373 AluY 311 + 4 311 105515 122 7 0 185 chain 10927 chrX 155270560 + 122981112 122981269 L1MA4A 3247 + 2955 3107 156497 14 4 1 65 2 0 72 chain 38971 chrX 155270560 + 122983759 122984263 LTR10F 562 + 0 562 70780 106 1 57 67 5 1 18 9 16 13 1 0 284 chain 19764 chrX 155270560 + 122997361 122997610 AluSp 311 - 14 283 127921 101 4 5 131 1 20 12 chain 4949 chrX 155270560 + 123017654 123017711 HY1 111 - 0 58 195711 18 0 1 39 chain 7937 chrX 155270560 + 123029045 123029584 L1MB7 1623 - 35 532 171405 28 420 378 91 chain 26767 chrX 155270560 + 123050307 123050603 AluY 311 + 6 303 97097 126 0 1 170 chain 27178 chrX 155270560 + 123064493 123064801 AluSc 308 - 0 308 95669 308 chain 10020 chrX 155270560 + 123064874 123065001 THE1C 375 + 228 355 160484 17 0 1 12 1 0 97 chain 86286 chrX 155270560 + 123065833 123067657 THE1C-int 1605 + 417 1605 41047 28 9 16 230 7 0 10 0 7 421 5 4 29 15 7 173 10 13 14 326 0 63 0 4 92 315 0 77 chain 24286 chrX 155270560 + 123091244 123091549 AluSz 310 + 5 310 108730 43 0 1 122 1 0 139 chain 5030 chrX 155270560 + 123112514 123112742 Tigger4a 237 + 0 237 194835 15 0 15 11 1 120 15 138 13 48 chain 23688 chrX 155270560 + 123125511 123125800 AluSp 311 - 9 297 112098 254 11 10 24 chain 22336 chrX 155270560 + 123129270 123129526 AluY 311 + 8 265 118752 124 0 1 132 chain 16566 chrX 155270560 + 123135361 123135679 Tigger3b 1229 + 883 1198 136748 92 1 0 50 1 3 55 36 1 13 6 36 22 25 26 17 chain 5538 chrX 155270560 + 123137855 123137953 L1MB3 1562 - 3 99 189674 35 1 0 9 10 9 43 chain 25353 chrX 155270560 + 123142065 123142362 AluSp 311 - 14 311 102933 297 chain 10939 chrX 155270560 + 123144010 123144439 L1MB2 1706 - 10 1373 156446 14 1 0 7 121 107 8 0 3 50 0 2 28 1 0 29 105 1046 18 1 5 46 chain 3170 chrX 155270560 + 123223666 123223702 MADE2 80 - 5 41 221556 36 chain 537431 chrX 155270560 + 123238293 123244385 L1PA4 6152 - 18 6152 3248 124 0 14 61 1 0 285 0 1 247 0 3 117 0 4 533 0 3 1577 1 0 297 0 1 101 0 3 56 5 0 8 0 5 688 0 3 987 1 0 194 2 13 99 2 1 248 1 4 457 chain 3273 chrX 155270560 + 123254344 123254383 L1ME2z 1083 + 683 722 219543 39 chain 112712 chrX 155270560 + 123261827 123263081 SVA_D 2077 - 21 1683 33476 317 0 10 187 0 225 231 1 0 22 0 51 27 0 83 78 0 40 391 chain 4588 chrX 155270560 + 123267154 123267230 U13_ 108 + 34 108 199763 42 11 9 23 chain 4775 chrX 155270560 + 123267686 123267751 L1MD3 1191 + 997 1060 197636 5 2 0 58 chain 86405 chrX 155270560 + 123270289 123271282 LTR13 1007 + 0 1007 41002 74 0 3 95 0 1 131 1 0 77 4 5 375 0 9 102 0 1 134 chain 85679 chrX 155270560 + 123271771 123280615 L1PREC2 3366 - 338 1820 41279 18 6 4 31 36 23 30 3 1 15 81 64 38 6 5 19 2 1 22 7 5 4 0 1 7 8 0 23 1 0 373 0 16 211 1 0 41 5 0 183 7341 0 285 5 19 29 2 3 11 chain 24057 chrX 155270560 + 123274183 123275212 MER51-int 1546 - 726 1542 110005 31 6 0 55 7 0 118 603 430 36 1 0 74 21 2 8 1 0 14 4 0 22 12 10 16 chain 28758 chrX 155270560 + 123275434 123275809 MER61-int 3695 - 2534 2959 90082 207 0 2 8 4 3 74 0 49 82 chain 39231 chrX 155270560 + 123279369 123279888 LTR10G 522 + 0 520 70410 40 1 0 59 1 0 23 7 12 219 0 1 94 4 1 71 chain 78486 chrX 155270560 + 123280981 123281915 L1PA7 6471 + 5446 6389 44279 168 0 4 91 15 16 72 0 4 588 chain 39361 chrX 155270560 + 123282082 123282573 LTR10F 562 + 0 562 70233 106 1 85 40 14 0 207 0 1 123 chain 30677 chrX 155270560 + 123290110 123290496 MLT2A1 477 - 92 477 83078 111 3 5 99 4 1 169 chain 471184 chrX 155270560 + 123290496 123296466 HERVL-int 5654 - 0 5654 7997 459 2 1 40 4 3 43 13 0 611 1 0 519 0 10 526 1 0 1330 1 0 84 307 0 615 3 0 295 1 0 10 8 7 425 0 1 568 0 3 104 chain 34060 chrX 155270560 + 123296466 123296903 MLT2A1 477 - 0 477 77528 49 5 45 212 3 0 82 0 3 86 chain 25692 chrX 155270560 + 123304214 123304559 THE1B 368 - 11 368 101321 63 1 0 91 6 5 29 1 0 110 0 15 44 chain 68664 chrX 155270560 + 123313029 123313789 L1PA3long 6157 - 0 762 48955 5 0 2 755 chain 21436 chrX 155270560 + 123316956 123317186 L1PA4 6152 + 5906 6136 122385 230 chain 10016 chrX 155270560 + 123325684 123325876 Tigger5 388 + 138 324 160507 95 46 42 23 3 1 25 chain 20095 chrX 155270560 + 123331978 123332342 THE1B 368 - 0 368 126846 56 7 6 29 8 6 28 9 17 12 0 4 10 1 0 5 31 26 52 8 9 108 chain 6880 chrX 155270560 + 123372604 123372709 L1MA7 2200 + 1874 1977 178353 75 11 9 19 chain 3394 chrX 155270560 + 123379016 123379158 LTR82A 830 - 120 251 217216 31 14 28 11 59 36 19 2 0 6 chain 37902 chrX 155270560 + 123398101 123399247 L1PA16 3655 - 277 823 72285 52 0 1 35 2 0 85 2 1 124 629 19 86 0 10 43 1 0 14 0 4 6 1 0 66 chain 111549 chrX 155270560 + 123431027 123432779 L1PA14 3548 + 1823 3485 33795 22 3 0 119 0 1 4 0 1 94 14 15 293 3 5 158 6 5 35 0 4 109 1 0 250 19 15 27 89 25 57 8 9 39 8 4 17 2 0 6 1 0 84 1 0 109 1 0 12 5 1 36 4 2 12 1 0 5 1 0 19 4 3 24 3 1 10 6 0 10 1 0 20 chain 13143 chrX 155270560 + 123443030 123443185 L1PA6 6164 - 160 315 147675 155 chain 92130 chrX 155270560 + 123443867 123444938 L1PA6 6164 - 2 1076 38923 208 6 0 176 0 1 199 0 1 257 0 7 225 chain 37590 chrX 155270560 + 123489776 123490190 L1PA5 6144 - 14 435 72698 124 0 7 290 chain 16602 chrX 155270560 + 123491803 123492043 L1MA8 2339 - 846 1089 136661 15 11 10 116 1 5 97 chain 16122 chrX 155270560 + 123508311 123508542 L1PA8 5853 - 0 229 137987 55 0 1 28 0 1 8 1 0 17 7 6 49 1 0 9 2 1 54 chain 9941 chrX 155270560 + 123524195 123524308 L1PA3long 6157 - 0 113 160873 113 chain 36736 chrX 155270560 + 123537523 123538014 LTR10F 562 + 6 562 73901 101 1 57 67 1 4 21 7 0 10 5 11 101 1 8 176 chain 57270 chrX 155270560 + 123542523 123543163 L1PA4 6152 - 0 643 54356 13 0 3 627 chain 131685 chrX 155270560 + 123543168 123544629 L1PA4 6152 + 3933 5402 27705 283 0 5 813 1 0 270 0 4 94 chain 26489 chrX 155270560 + 123558465 123558881 MSTA 426 + 0 425 98082 102 45 54 60 2 0 36 12 14 159 chain 14629 chrX 155270560 + 123558957 123559264 L1MA5 2750 - 165 545 142488 21 1 0 35 77 123 22 1 0 4 0 1 40 15 39 13 0 4 78 chain 134899 chrX 155270560 + 123585340 123586868 L1PA5 6144 + 4601 6141 27032 692 0 1 7 0 1 345 0 1 162 0 4 158 0 5 164 chain 103200 chrX 155270560 + 123628365 123629491 L1PA3long 6157 - 0 1127 35949 4 0 1 1122 chain 57486 chrX 155270560 + 123629492 123630123 L1PA3long 6157 + 4418 5049 54248 631 chain 43842 chrX 155270560 + 123651173 123651667 L1PA5 6144 + 5645 6138 64396 246 1 0 247 chain 22557 chrX 155270560 + 123687074 123687365 AluSq2 311 + 10 299 117777 35 11 8 77 1 2 167 chain 17535 chrX 155270560 + 123716192 123716415 L1PA16 3655 - 1510 1734 134172 144 0 1 79 chain 555157 chrX 155270560 + 123716420 123722552 L1PA3long 6157 + 24 6157 808 226 2 4 1062 0 1 4276 1 0 295 11 10 259 chain 41385 chrX 155270560 + 123730748 123731536 L1PB1 5432 + 4691 5430 67427 106 3 2 12 1 0 33 8 9 34 0 1 107 2 1 99 21 19 24 1 0 4 5 4 12 5 1 9 4 2 50 16 16 43 10 9 8 3 0 15 24 1 14 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 7 5 3 12 1 0 4 chain 60690 chrX 155270560 + 123731544 123732693 L1MA2 4263 + 3228 4218 52476 356 5 2 4 1 0 71 2 1 85 0 1 5 5 6 37 13 10 40 20 13 54 1 0 6 0 1 35 12 10 44 1 0 49 7 0 47 1 0 9 4 2 11 3 1 14 175 46 16 4 2 12 chain 21677 chrX 155270560 + 123793981 123794240 AluY 311 + 39 297 121476 242 1 0 16 chain 19827 chrX 155270560 + 123801793 123802011 L1PA5 6144 - 681 899 127724 218 chain 61939 chrX 155270560 + 123802015 123802707 L1PA5 6144 + 5450 6141 51926 582 1 0 109 chain 2999 chrX 155270560 + 123811815 123811850 L1MC4a 1092 + 1057 1092 225043 35 chain 5342 chrX 155270560 + 123881342 123881420 MADE1 96 - 0 95 191625 30 0 1 5 2 18 41 chain 559847 chrX 155270560 + 123885343 123891484 L1PA3long 6157 - 0 6147 366 1508 0 5 1002 0 1 125 1 2 2067 2 1 1436 chain 14473 chrX 155270560 + 123893196 123893466 L1PB1 5432 - 10 262 142976 18 1 0 9 0 3 22 1 0 23 6 4 12 1 0 4 2 0 19 23 12 15 1 0 43 2 1 16 2 1 50 chain 9209 chrX 155270560 + 123894243 123894369 L1P1 4361 - 184 309 164157 29 9 8 88 chain 101065 chrX 155270560 + 123894369 123895550 L1PA6 6164 + 4979 6161 36495 65 1 0 271 1 0 47 0 2 225 0 2 562 1 0 8 chain 338868 chrX 155270560 + 123931544 123935869 L1PA8 5853 - 0 4433 11926 92 7 6 13 3 2 13 0 1 22 20 20 5 1 0 71 2 0 44 1 0 69 0 5 145 1 0 5 0 1 178 0 1 153 0 1 426 2 0 4 0 1 48 6 11 7 5 0 175 3 0 281 0 90 122 0 1 91 0 1 698 0 5 151 11 9 130 7 0 6 0 3 5 0 4 248 0 4 311 0 6 163 0 5 580 chain 21345 chrX 155270560 + 123940733 123941129 MSTB 430 - 15 422 122706 95 8 13 16 1 0 77 91 98 108 chain 41001 chrX 155270560 + 123950751 123951226 L1PA7 6471 - 12 487 67901 475 chain 3431 chrX 155270560 + 123980963 123981009 MER103C 291 + 118 163 216557 38 1 0 7 chain 12870 chrX 155270560 + 123988067 123988348 L1PB1 5432 + 5169 5430 148753 51 2 1 16 1 0 42 2 1 16 2 0 6 61 51 17 1 0 23 1 0 11 1 0 13 1 0 8 1 0 5 chain 176533 chrX 155270560 + 124000000 124002673 L1MA1 4479 + 1546 4190 21299 123 1 0 14 1 2 26 0 1 105 12 0 10 0 12 95 0 1 127 18 6 42 0 1 6 0 3 6 0 3 17 0 12 100 8 10 20 4 3 144 0 7 67 1 2 5 1 0 86 1 0 65 2 1 39 0 1 63 6 4 29 1 0 62 70 69 23 1 0 26 13 11 136 0 2 25 2 0 17 4 0 41 0 1 32 9 8 6 4 0 78 2 1 47 3 0 124 1 0 56 0 1 111 0 1 33 1 0 24 2 0 12 5 4 71 1 0 19 2 0 14 1 0 83 15 10 126 1 0 28 12 10 26 1 0 9 1 0 11 4 2 8 7 0 18 chain 23867 chrX 155270560 + 124005616 124005899 AluSc5 308 + 16 299 111101 283 chain 21135 chrX 155270560 + 124016539 124016836 L1PREC2 3366 - 567 870 123430 15 2 12 18 3 1 42 2 0 57 2 1 108 0 1 48 chain 32449 chrX 155270560 + 124042025 124042495 L1PA8 5853 - 0 469 80114 15 0 8 70 1 0 19 2 1 35 38 36 59 4 2 44 1 0 101 2 0 79 chain 26425 chrX 155270560 + 124100244 124100533 AluY 311 + 15 303 98320 117 0 1 164 2 0 6 chain 59737 chrX 155270560 + 124104479 124105147 L1PA5 6144 + 5478 6142 52971 657 4 0 7 chain 25871 chrX 155270560 + 124107625 124107941 L1PA7 6471 + 6128 6463 100563 185 1 0 18 0 13 34 0 7 78 chain 9120 chrX 155270560 + 124115720 124115818 L1HS 6032 + 5934 6032 164967 98 chain 432263 chrX 155270560 + 124140140 124146198 L1PA8 5853 + 108 5852 9254 121 1 0 5 20 21 27 1 4 10 24 12 14 0 11 42 1 2 249 39 31 298 0 1 202 30 24 25 4 0 6 18 22 180 2 0 137 0 5 502 23 22 461 6 7 365 21 19 181 2 0 5 0 2 108 0 3 673 0 6 429 309 4 502 0 1 130 8 6 11 3 0 13 0 2 71 3 0 389 0 3 92 1 0 44 2 0 71 1 0 10 1 0 51 2 1 19 1 0 92 chain 52444 chrX 155270560 + 124151219 124151873 L1PA7 6471 + 5808 6466 57325 328 0 1 6 8 9 25 0 1 127 4 5 156 chain 103611 chrX 155270560 + 124176895 124178015 L1PA2 6032 + 4900 6021 35830 289 0 1 831 chain 60536 chrX 155270560 + 124184027 124184703 L1PA4 6152 - 16 692 52558 676 chain 159346 chrX 155270560 + 124184703 124198169 L1PA4 6152 + 4145 6152 23421 203 0 4 79 2 0 111 0 3 845 11467 0 134 0 2 459 0 1 166 chain 6403 chrX 155270560 + 124197127 124197210 HSMAR2 1300 + 62 145 182001 83 chain 16519 chrX 155270560 + 124197219 124197409 L1PA4 6152 + 5198 5390 136857 8 0 1 68 0 1 114 chain 3142 chrX 155270560 + 124203462 124203500 L1PA8 5853 + 5702 5740 222125 38 chain 9057 chrX 155270560 + 124203502 124203615 L1PA8 5853 + 5741 5853 165274 19 1 0 93 chain 3022 chrX 155270560 + 124204065 124204135 L1PA17 2846 - 174 242 224588 23 23 21 24 chain 6205 chrX 155270560 + 124209107 124209300 L1MB7 1623 - 84 239 183545 7 7 0 12 4 1 20 1 0 5 7 3 12 1 0 27 51 29 39 chain 327155 chrX 155270560 + 124247294 124251549 L1PA7 6471 + 2487 6459 12302 145 0 2 67 4 6 720 0 21 49 1 0 75 0 4 108 9 7 673 0 2 278 0 1 303 7 1 244 0 4 33 0 3 45 1 2 322 0 4 8 1 0 97 0 3 84 312 0 263 24 16 382 chain 7780 chrX 155270560 + 124285589 124285722 MER20 218 + 53 199 172417 27 30 43 76 chain 115176 chrX 155270560 + 124288447 124289873 LTR12C 1709 - 0 1709 32720 84 1 0 63 1 0 334 0 4 45 4 1 56 8 6 4 1 0 98 0 278 266 8 0 109 0 1 61 0 2 5 2 15 15 5 6 256 chain 3939 chrX 155270560 + 124348992 124349034 L1PA6 6164 + 6117 6159 208283 42 chain 8934 chrX 155270560 + 124373749 124373849 L1PA4 6152 - 1 102 165955 79 0 1 21 chain 122857 chrX 155270560 + 124389313 124390726 LTR12C 1709 + 0 1709 30096 569 0 13 68 0 278 184 1 0 4 5 3 95 10 14 36 0 4 441 chain 20000 chrX 155270560 + 124399204 124399525 THE1B 368 + 5 355 127145 13 1 2 11 9 24 12 0 1 100 5 4 22 1 5 96 15 24 36 chain 25564 chrX 155270560 + 124401112 124401458 THE1B 368 + 0 368 101913 44 0 15 117 1 0 130 8 16 46 chain 4948 chrX 155270560 + 124403745 124403825 L1M1 2793 - 98 172 195722 10 1 0 12 1 0 42 1 0 4 3 0 6 chain 9652 chrX 155270560 + 124403825 124403940 THE1C-int 1605 + 1484 1599 162341 115 chain 2528 chrX 155270560 + 124421676 124421720 MER52A 1651 + 795 840 232819 13 6 7 25 chain 7957 chrX 155270560 + 124424466 124424576 L1PA8 5853 - 0 109 171292 64 0 1 19 1 0 9 1 0 16 chain 123410 chrX 155270560 + 124451953 124453477 LTR12C 1709 - 0 1709 29912 60 1 132 40 44 14 22 0 1 212 0 4 38 0 2 67 3 1 5 1 0 193 0 81 595 0 1 133 2 0 108 chain 43491 chrX 155270560 + 124469816 124470364 MLT2A2 560 + 0 560 64824 206 0 1 200 0 11 142 chain 34265 chrX 155270560 + 124470967 124471416 MER4A1 472 - 0 472 77258 210 11 32 197 1 0 5 1 2 10 0 2 14 chain 26296 chrX 155270560 + 124475671 124475969 L1PA5 6144 - 13 311 98845 298 chain 9150 chrX 155270560 + 124482245 124482373 MER85 139 + 0 139 164810 88 4 15 36 chain 14823 chrX 155270560 + 124485272 124485562 L1M1 2793 + 729 1003 141871 11 2 0 4 2 0 13 21 17 28 1 0 29 14 11 51 3 1 8 1 0 25 1 0 76 chain 4008 chrX 155270560 + 124491245 124491709 MLT-int 841 - 339 812 207277 23 268 290 20 114 102 17 1 0 21 chain 149598 chrX 155270560 + 124497873 124499865 L1PA11 4918 - 447 2417 24674 77 2 1 63 4 0 957 0 3 125 0 3 63 17 1 235 7 5 209 9 7 14 7 4 203 chain 144141 chrX 155270560 + 124505113 124507042 L1P3 4156 - 2199 4153 25459 453 4 7 261 0 4 18 0 4 204 22 21 270 39 43 254 10 9 9 1 0 80 1 0 53 8 22 242 chain 14246 chrX 155270560 + 124509317 124509525 L1PA13 3608 - 150 349 143738 10 2 0 5 2 0 47 2 0 61 1 0 60 3 1 15 chain 2725 chrX 155270560 + 124510583 124510834 L1MEb 951 - 233 488 229789 21 204 208 26 chain 15314 chrX 155270560 + 124520092 124520291 MER4D1 891 - 0 197 140447 70 1 0 17 1 0 110 chain 39110 chrX 155270560 + 124522686 124523132 LTR7 482 - 0 475 70588 186 0 31 11 2 0 247 chain 288769 chrX 155270560 + 124524404 124527956 HERVH-int 3825 - 9 3825 14100 80 3 0 136 3 8 254 7 221 36 9 11 195 0 2 862 0 4 291 8 35 390 1 0 4 0 1 63 15 0 16 6 0 428 1 0 24 2 1 24 2 1 7 0 20 46 1 0 25 4 1 12 1 14 24 2 1 8 2 1 38 5 0 309 0 11 23 4 8 181 chain 41245 chrX 155270560 + 124527958 124528409 LTR7 482 - 0 482 67597 187 0 31 264 chain 58505 chrX 155270560 + 124529229 124530024 MER4E1 777 - 8 777 53699 4 1 0 207 57 26 67 0 1 132 1 5 304 4 5 18 chain 13253 chrX 155270560 + 124547739 124547911 L1PA4 6152 + 5969 6142 147272 28 1 8 7 6 0 130 chain 276228 chrX 155270560 + 124579095 124583147 L1PA10 4194 + 253 4161 14860 18 12 8 7 1 0 8 53 30 11 2 0 21 1 0 6 2 1 11 8 6 15 16 10 72 0 1 6 2 0 44 7 8 65 0 1 156 1 0 403 0 1 139 0 18 5 18 0 395 0 1 53 6 5 96 12 15 333 0 4 160 3 0 216 0 1 25 41 42 61 0 10 34 0 4 538 85 1 234 7 15 86 55 0 32 6 7 73 3 4 130 0 3 180 23 29 5 3 0 30 3 1 14 chain 69522 chrX 155270560 + 124600516 124601515 MER11A 1151 + 0 1151 48597 62 0 106 28 2 0 32 1 0 66 0 11 23 35 0 204 0 12 138 2 5 15 3 4 37 0 4 69 0 2 16 1 59 101 5 4 63 4 0 24 9 8 19 1 0 39 chain 49429 chrX 155270560 + 124626808 124627398 LTR10C 591 + 0 591 59436 205 1 0 299 4 6 81 chain 99376 chrX 155270560 + 124641231 124642490 HSMAR1 1287 - 9 1274 36935 540 0 1 170 1 3 170 2 0 177 17 16 32 5 10 128 0 1 17 chain 9769 chrX 155270560 + 124642663 124642787 MER44B 551 + 337 461 161750 124 chain 437899 chrX 155270560 + 124644214 124649036 L1PA3long 6157 - 1 4826 9105 226 0 3 4596 chain 391471 chrX 155270560 + 124670611 124676060 L1PB1 5432 + 57 5274 10408 145 0 3 70 1 2 108 5 6 251 3 1 221 9 11 69 0 10 274 2 4 86 11 0 86 8 7 170 0 1 85 5 8 35 6 1 180 1 11 24 0 2 572 19 6 166 4 5 166 14 13 880 9 1 34 0 1 116 1 0 157 0 1 575 3 0 11 0 1 30 0 7 15 7 10 108 9 10 32 0 1 132 0 18 107 245 2 9 3 0 20 1 0 13 1 0 5 10 6 9 2 0 52 1 0 18 1 0 37 chain 45420 chrX 155270560 + 124679991 124680553 MLT2A2 560 - 0 560 62571 196 3 0 159 0 1 204 chain 83787 chrX 155270560 + 124682927 124683995 MER11B 1079 - 13 1079 41993 8 0 2 285 7 2 35 0 1 45 0 4 89 36 35 296 3 0 264 chain 5261 chrX 155270560 + 124683995 124684079 L1PA16 3655 + 2055 2138 192399 59 10 9 15 chain 2950 chrX 155270560 + 124686981 124687027 L1P4 1494 + 1367 1410 226067 9 1 0 14 2 0 20 chain 25564 chrX 155270560 + 124688892 124689185 L1PA4 6152 + 5847 6140 101911 293 chain 15260 chrX 155270560 + 124693977 124694314 L1M1 2793 + 2314 2685 140602 98 22 53 25 72 74 58 7 9 43 2 1 10 chain 16255 chrX 155270560 + 124695994 124696303 MER61A 341 - 0 298 137595 58 12 16 12 34 27 9 1 0 14 29 22 140 chain 9062 chrX 155270560 + 124726020 124726148 L1PA8 5853 - 0 126 165247 93 1 0 15 2 1 17 chain 519347 chrX 155270560 + 124743221 124748963 L1PA3long 6157 - 266 6157 5229 473 0 10 2837 0 1 1664 1 129 63 0 7 283 0 1 167 0 1 102 0 1 152 chain 25044 chrX 155270560 + 124776153 124776456 AluYk4 311 + 5 309 104578 46 6 7 251 chain 220746 chrX 155270560 + 124790943 124793427 L1PA5 6144 + 3649 6144 17833 324 2 3 503 0 1 107 0 1 69 0 3 48 0 1 280 0 1 281 0 4 12 1 0 96 0 1 547 1 0 213 chain 3560 chrX 155270560 + 124796976 124797027 MADE1 96 + 29 96 214333 13 1 17 37 chain 8314 chrX 155270560 + 124810974 124811080 THE1D-int 1627 - 1496 1605 169308 19 1 4 86 chain 20745 chrX 155270560 + 124817063 124817326 L1PB1 5432 + 3470 3734 124803 12 0 1 251 chain 19831 chrX 155270560 + 124817331 124817582 L1PB1 5432 + 3734 3985 127708 251 chain 23934 chrX 155270560 + 124817584 124817958 L1PB1 5432 + 3986 4353 110720 106 10 7 16 21 31 19 13 0 104 7 6 78 chain 26894 chrX 155270560 + 124817983 124818401 L1PB1 5432 + 4806 5215 96648 190 0 1 106 1 2 9 3 0 24 1 0 5 2 1 12 28 22 37 chain 7654 chrX 155270560 + 124818419 124818616 L1PB1 5432 + 5237 5414 173193 44 1 0 7 77 61 21 1 0 21 1 0 13 1 0 10 chain 51384 chrX 155270560 + 124822425 124823075 PABL_B 668 + 0 651 58039 277 2 1 68 6 5 86 0 3 211 chain 113483 chrX 155270560 + 124823747 124825136 LTR12C 1709 - 0 1709 33228 82 1 0 69 1 0 44 0 4 282 11 4 77 3 208 33 0 2 17 0 1 38 0 118 204 2 1 181 1 0 47 0 1 296 chain 3470 chrX 155270560 + 124833754 124833810 L1P4 1494 + 1326 1381 215808 20 5 4 31 chain 18581 chrX 155270560 + 124852340 124852543 L1PA3long 6157 - 0 203 131286 203 chain 9065 chrX 155270560 + 124854783 124854921 L1M1 2793 + 2547 2685 165235 35 4 6 40 1 0 45 1 0 12 chain 51588 chrX 155270560 + 124855715 124856394 THE1B-int 1605 + 928 1597 57895 33 1 2 490 6 7 78 18 6 53 chain 25333 chrX 155270560 + 124856407 124856759 THE1B 368 + 5 368 103055 35 0 15 105 13 12 21 2 0 101 1 0 74 chain 325143 chrX 155270560 + 124860605 124864796 HERVL-int 5654 - 1074 5625 12383 330 1 3 142 19 8 9 1 0 139 1 0 386 0 1 43 2 1 500 0 1 231 0 8 231 1 0 4 0 1 245 36 4 570 0 2 626 7 10 128 0 1 81 2 387 16 0 2 310 6 7 124 chain 19640 chrX 155270560 + 124866429 124866666 HERVL-int 5654 - 3529 3766 128283 237 chain 4305 chrX 155270560 + 124892254 124892354 LTR25 836 + 498 563 203148 46 41 6 13 chain 94830 chrX 155270560 + 124895528 124896647 L1PA6 6164 + 5035 6160 38137 280 2 6 12 0 2 825 chain 3308 chrX 155270560 + 124903850 124903921 LTR16A 446 + 319 401 218816 32 22 33 17 chain 76629 chrX 155270560 + 124913492 124914460 LTR5_Hs 974 + 0 974 45150 289 0 1 179 0 1 186 1 0 163 8 15 19 20 18 103 chain 9118 chrX 155270560 + 124914914 124915038 MER85 139 + 4 138 164977 85 1 11 38 chain 89929 chrX 155270560 + 124922687 124923698 L1PA5 6144 - 1907 2915 39675 608 4 0 120 0 1 279 chain 170006 chrX 155270560 + 124923700 124925594 L1PA5 6144 + 4250 6143 22050 1752 1 0 141 chain 8415 chrX 155270560 + 124940928 124941021 L1PA3long 6157 - 0 93 168759 93 chain 190496 chrX 155270560 + 124943910 124946418 HERVL-int 5654 - 0 2534 19999 160 0 1 10 3 4 99 0 2 124 0 28 38 0 1 4 1 0 247 33 13 212 0 7 18 0 2 5 2 0 143 6 0 7 12 18 336 1 7 409 0 2 350 1 0 287 chain 2734 chrX 155270560 + 124944596 124944626 HERVL-int 5654 - 2132 2162 224916 30 chain 31996 chrX 155270560 + 124946418 124946848 MLT2A1 477 + 0 463 80873 140 1 2 26 2 6 211 3 31 47 chain 30203 chrX 155270560 + 124956279 124956682 THE1B-int 1605 - 1173 1577 84186 315 4 1 6 0 3 61 4 5 13 chain 45363 chrX 155270560 + 124962465 124963025 MLT2A2 560 + 0 560 62642 560 chain 557578 chrX 155270560 + 124972842 124978994 L1PA3long 6157 + 4 6157 545 703 1 0 2039 0 1 990 1 2 216 1 0 1468 0 1 733 chain 15017 chrX 155270560 + 125016389 125016709 THE1C 375 + 0 336 141274 14 2 0 33 42 51 74 55 64 100 chain 19108 chrX 155270560 + 125050967 125051339 L1PA13 3608 - 123 480 129800 17 1 0 20 2 0 7 9 7 38 2 0 5 1 0 35 29 24 56 24 23 93 1 0 32 chain 451744 chrX 155270560 + 125051346 125057145 L1PA8 5853 - 0 5798 8710 76 1 0 16 6 5 15 2 1 38 6 7 4 1 0 10 6 5 68 2 0 32 13 12 476 0 1 77 2 0 522 0 27 97 0 1 28 14 15 112 1 0 315 0 1 514 6 8 179 1 0 201 0 6 20 0 5 50 0 1 26 27 26 371 0 4 350 0 1 106 12 0 117 0 2 184 4 5 128 7 8 913 8 9 8 0 6 59 0 1 164 1 0 111 3 7 194 52 13 13 1 0 11 2 0 16 chain 189730 chrX 155270560 + 125061347 125063455 L1PA3long 6157 - 0 2105 20081 5 2 0 137 0 2 9 4 0 1647 0 1 304 chain 13271 chrX 155270560 + 125063806 125063997 MER50 708 - 24 654 147209 132 11 450 48 chain 8202 chrX 155270560 + 125066332 125066459 LTR28 1034 - 896 1025 169944 27 0 2 64 16 17 4 1 0 15 chain 16174 chrX 155270560 + 125070009 125070214 L1PA4 6152 - 139 487 137829 10 1 3 173 0 141 21 chain 15472 chrX 155270560 + 125077776 125077939 L1HS 6032 + 5869 6032 139985 163 chain 71919 chrX 155270560 + 125095759 125096770 LTR12 884 - 0 879 47515 139 1 2 366 2 0 152 130 0 203 1 0 17 chain 10906 chrX 155270560 + 125096419 125096549 LTR12 884 - 527 657 154652 130 chain 12298 chrX 155270560 + 125098692 125098912 L1PA8 5853 - 74 288 151016 19 2 1 16 1 0 41 34 32 62 2 0 43 chain 98471 chrX 155270560 + 125113054 125114291 THE1A-int 1579 - 327 1579 37168 307 0 15 394 17 17 519 chain 12494 chrX 155270560 + 125134547 125134716 THE1A 353 + 185 353 150267 25 9 8 135 chain 56662 chrX 155270560 + 125154569 125155211 L1PA5 6144 - 1455 2102 54685 61 0 1 327 0 4 254 chain 125892 chrX 155270560 + 125155211 125156662 L1PA5 6144 + 4709 6144 29132 43 22 0 105 0 1 435 0 5 846 chain 32181 chrX 155270560 + 125168925 125169351 MLT2A1 477 + 0 417 80560 138 0 1 29 1 5 221 1 0 4 11 0 14 2 0 5 chain 419603 chrX 155270560 + 125169891 125176535 HERVL-int 5654 + 0 5654 9540 210 0 3 663 0 1 4 6 12 197 3 4 617 6 0 62 5 0 92 12 11 392 1 2 306 0 1 72 0 1 790 11 9 241 20 280 401 0 2 138 1262 3 214 15 0 10 1 22 11 6 0 23 26 24 7 0 6 746 0 3 74 chain 73904 chrX 155270560 + 125174145 125175031 L1PA7 6471 - 375 1260 46562 474 2 0 187 0 1 223 chain 30962 chrX 155270560 + 125175031 125175385 L1PA7 6471 + 6105 6459 82580 354 chain 31002 chrX 155270560 + 125176535 125176958 MLT2A1 477 + 0 477 82509 59 1 0 80 1 2 28 1 5 90 8 9 110 1 0 2 0 50 42 chain 82019 chrX 155270560 + 125185427 125186323 L1PA3long 6157 - 0 898 42750 772 0 2 124 chain 63774 chrX 155270560 + 125203803 125204498 L1PA4 6152 - 415 1110 51112 695 chain 38085 chrX 155270560 + 125204498 125204922 L1PA4 6152 + 5727 6151 72009 424 chain 379559 chrX 155270560 + 125228076 125233118 HERVL-int 5654 - 0 5654 10769 156 14 0 113 0 1 7 0 1 153 18 0 193 7 1 50 0 3 192 1 20 10 1 0 293 0 1 210 1 3 351 9 6 437 0 34 767 3 4 106 0 1 165 18 603 118 11 15 84 0 1 4 4 3 63 25 24 327 0 1 14 0 1 409 9 12 35 9 7 586 1 0 6 0 1 62 chain 514104 chrX 155270560 + 125238433 125244119 L1PA3long 6157 - 323 6157 5766 1476 0 4 3189 0 3 256 1 129 513 0 6 87 0 6 12 0 1 152 chain 9210 chrX 155270560 + 125273918 125274022 L1PA8A 6298 + 6186 6290 164507 104 chain 94180 chrX 155270560 + 125287393 125288424 L1PA3long 6157 - 0 1035 38198 148 0 2 699 0 2 184 chain 127641 chrX 155270560 + 125288424 125289847 L1P1 4361 + 1598 3021 28660 1423 chain 28946 chrX 155270560 + 125312820 125313139 L1PA3long 6157 - 530 849 89242 319 chain 49984 chrX 155270560 + 125313155 125313703 L1PA3long 6157 + 5609 6157 59028 548 chain 546007 chrX 155270560 + 125319201 125325235 L1PA2 6032 - 0 6020 1943 860 3 1 1632 0 1 1042 0 1 2239 5 4 206 13 0 34 chain 43711 chrX 155270560 + 125326753 125327246 L1PA4 6152 - 1456 1950 63891 292 0 1 201 chain 128450 chrX 155270560 + 125327246 125328686 L1PA4 6152 + 4699 6143 28466 605 0 4 835 chain 18695 chrX 155270560 + 125344115 125344319 L1PA5 6144 - 195 399 130962 204 chain 13374 chrX 155270560 + 125344319 125344471 L1PA5 6144 + 5986 6138 146802 152 chain 6131 chrX 155270560 + 125356177 125356252 Tigger3b 1229 - 1014 1089 184178 75 chain 30490 chrX 155270560 + 125359505 125359923 MSTA 426 + 3 426 83450 201 1 0 4 6 8 9 0 6 5 2 0 190 chain 159609 chrX 155270560 + 125360666 125362695 HERVL-int 5654 + 3644 5645 23384 406 0 1 378 0 1 634 9 7 147 33 1 11 0 3 360 0 1 51 chain 29492 chrX 155270560 + 125362704 125363084 MLT2A1 477 + 1 380 86664 168 4 1 9 1 2 17 0 1 181 chain 535527 chrX 155270560 + 125363449 125369410 L1PA3long 6157 - 6 6103 3510 2858 0 1 108 0 1 2228 0 1 45 0 128 209 0 4 413 1 2 99 chain 26106 chrX 155270560 + 125375138 125375424 L1PA5 6144 - 483 769 99594 286 chain 42241 chrX 155270560 + 125375424 125375902 L1PA5 6144 + 5666 6144 66346 478 chain 60479 chrX 155270560 + 125389590 125390410 L1PA8 5853 - 0 835 52593 93 1 0 14 12 11 28 2 20 8 1 0 71 2 0 5 0 2 37 1 0 470 0 1 75 chain 30296 chrX 155270560 + 125397831 125398149 AluYb8 318 - 0 318 83926 318 chain 188330 chrX 155270560 + 125400559 125402728 L1PA5 6144 - 32 2191 20207 220 0 3 435 4 0 116 2 0 1121 4 0 103 4 0 99 6 7 55 chain 29219 chrX 155270560 + 125420526 125420834 AluYa5 310 - 2 310 87961 308 chain 12035 chrX 155270560 + 125421436 125421574 L1PA2 6032 - 1 137 152053 5 2 0 131 chain 105718 chrX 155270560 + 125421574 125422716 L1PA2 6032 + 4763 5905 35324 1142 chain 3447 chrX 155270560 + 125428655 125428709 MER21C 908 - 28 122 216252 20 1 0 25 0 41 8 chain 244175 chrX 155270560 + 125429852 125432900 HERVL-int 5654 - 2597 5654 16548 448 8 9 57 2 1 671 1 11 204 0 1 537 4 3 367 1 0 93 1 0 393 1 2 260 chain 10261 chrX 155270560 + 125433573 125433693 MLT2A1 477 - 357 477 159320 120 chain 8878 chrX 155270560 + 125435672 125435907 LTR54B 464 - 213 462 166242 27 113 127 95 chain 23292 chrX 155270560 + 125443617 125443873 L1PA3long 6157 - 0 256 114248 256 chain 48394 chrX 155270560 + 125481069 125481614 L1PA4 6152 + 5594 6146 60187 397 5 12 143 chain 158457 chrX 155270560 + 125490920 125493568 L1PA7 6471 + 4492 6462 23536 82 1 0 4 0 1 54 2 1 77 8 3 234 1 2 124 5 6 517 0 2 15 0 2 22 1 2 72 0 3 192 681 0 232 1 0 323 chain 46290 chrX 155270560 + 125492351 125492896 L1PA7 6471 + 5923 6470 61779 208 0 1 165 1 2 171 chain 73149 chrX 155270560 + 125495104 125495999 L1PA7 6471 - 283 1185 46946 490 0 2 26 6 7 46 11 15 316 chain 99032 chrX 155270560 + 125496671 125497891 L1PA8A 6298 - 447 1656 37020 125 11 3 18 6 5 215 1 0 48 0 1 611 2 0 183 chain 34117 chrX 155270560 + 125497891 125498310 L1PA8A 6298 + 5873 6292 77456 82 0 1 50 1 0 160 1 0 6 0 1 119 chain 5434 chrX 155270560 + 125507425 125507504 MADE1 96 + 0 96 190662 23 2 1 7 0 18 47 chain 531787 chrX 155270560 + 125517133 125523242 L1PA4 6152 + 3 6137 3989 1158 0 3 658 1 0 452 2 1 6 0 1 617 1 2 98 1 0 517 1 0 262 0 1 704 0 1 152 0 5 314 1 16 432 0 1 407 1 2 324 chain 21475 chrX 155270560 + 125547219 125547467 L1PA7 6471 - 829 1076 121259 23 1 0 224 chain 52626 chrX 155270560 + 125547467 125548074 L1PA7 6471 + 5688 6295 57223 607 chain 14247 chrX 155270560 + 125548079 125548239 L1PA7 6471 + 6309 6469 143732 160 chain 56723 chrX 155270560 + 125561488 125562110 L1PA2 6032 - 18 640 54703 622 chain 61738 chrX 155270560 + 125571111 125571778 L1PA2 6032 + 5358 6024 52018 338 1 0 328 chain 9488 chrX 155270560 + 125580084 125580295 L1PA14 3548 - 101 301 163128 29 6 5 15 1 0 5 1 0 15 4 2 9 37 32 37 1 0 51 chain 72780 chrX 155270560 + 125586199 125587208 THE1B-int 1605 + 13 1077 47132 414 4 29 217 25 24 84 37 38 217 0 30 11 chain 473374 chrX 155270560 + 125593928 125599271 L1PA4 6152 + 3 6152 7936 577 1 0 142 0 808 3848 1 0 50 0 2 716 2 0 6 chain 111321 chrX 155270560 + 125645288 125646792 THE1B-int 1605 - 9 1605 33854 394 5 6 16 40 107 436 22 20 109 3 4 47 0 25 432 chain 145099 chrX 155270560 + 125657702 125659346 L1PA5 6144 + 4500 6144 25310 128 1 0 666 1 0 608 0 2 240 chain 3437 chrX 155270560 + 125664050 125664091 L1MA9 1812 + 1282 1323 216448 41 chain 8692 chrX 155270560 + 125676943 125677050 MER85 139 + 5 122 167238 85 0 10 22 chain 39229 chrX 155270560 + 125681815 125682244 L1PA4 6152 + 5462 5891 70412 429 chain 23233 chrX 155270560 + 125682244 125682504 L1PA4 6152 + 5892 6152 114528 260 chain 36651 chrX 155270560 + 125688855 125689386 MER51A 677 + 0 658 74023 60 17 18 76 3 2 20 0 135 50 5 6 149 1 0 75 8 0 67 chain 205054 chrX 155270560 + 125696759 125699076 L1PA5 6144 - 1103 3424 18853 766 3 0 209 1 0 390 2 0 217 0 10 729 chain 94006 chrX 155270560 + 125699076 125700167 L1PA5 6144 + 5044 6137 38274 427 1 2 332 0 1 331 chain 27786 chrX 155270560 + 125701360 125701686 L1PA7 6471 + 6134 6461 93748 186 0 1 140 chain 4080 chrX 155270560 + 125703450 125703554 MER53 195 + 24 130 206189 42 43 45 19 chain 79941 chrX 155270560 + 125713955 125714864 L1P1 4361 - 20 926 43625 12 2 1 23 9 8 146 1 0 716 chain 47705 chrX 155270560 + 125726312 125726866 L1PA7 6471 - 2 557 60691 155 0 1 399 chain 17507 chrX 155270560 + 125749895 125750110 L1PA5 6144 + 5929 6144 134243 215 chain 9496 chrX 155270560 + 125754832 125755024 MER66B 489 - 22 202 163094 44 26 21 27 0 17 18 25 1 52 chain 108189 chrX 155270560 + 125774716 125775954 SVA_D 2077 + 8 1699 34654 29 0 5 22 0 1 401 0 76 353 13 55 10 0 1 30 0 229 9 0 1 73 0 98 298 chain 35537 chrX 155270560 + 125775968 125776351 L1PA3long 6157 + 5774 6157 75494 383 chain 333233 chrX 155270560 + 125805267 125811649 L1PA11 4918 + 13 4567 12080 31 2 0 27 10 8 36 1 0 13 8 6 47 2 1 32 2 0 4 2 1 57 12 4 45 6 7 76 1 2 87 9 5 178 12 9 61 4 3 85 0 4 272 0 1 89 0 1 150 11 7 443 3 0 44 1793 9 403 0 4 153 1 0 296 4 0 55 0 2 182 4 5 103 0 3 602 11 9 399 1 0 186 5 4 30 0 2 17 0 4 14 5 0 62 2 1 80 2 0 14 1 0 17 9 0 12 31 22 5 0 3 7 1 0 13 chain 145240 chrX 155270560 + 125807164 125808922 SVA_C 1631 + 0 1629 25288 14 2 0 9 3 1 730 80 0 110 1 0 46 1 0 45 1 0 47 44 2 625 chain 2279 chrX 155270560 + 125807961 125808002 SVA_C 1631 + 753 794 170704 14 5 5 22 chain 19398 chrX 155270560 + 125816712 125816940 L1PA8A 6298 - 7 235 128957 228 chain 4843 chrX 155270560 + 125837859 125837916 L1PA6 6164 + 6103 6160 196855 57 chain 4068 chrX 155270560 + 125853719 125853765 MADE1 96 - 50 96 206344 46 chain 10308 chrX 155270560 + 125878414 125878527 L1PA5 6144 - 5 118 159094 113 chain 52383 chrX 155270560 + 125884842 125885490 PABL_B 668 - 21 668 57370 369 1 0 278 chain 10530 chrX 155270560 + 125910813 125911080 L1PB1 5432 - 10 254 158133 18 1 0 13 2 1 20 1 0 20 64 48 6 1 0 15 1 0 44 23 21 38 chain 10058 chrX 155270560 + 125913634 125913890 L1PB1 5432 + 5178 5411 160280 38 23 21 43 1 0 16 1 0 6 17 6 19 28 23 20 1 0 20 5 4 10 1 0 7 chain 106177 chrX 155270560 + 125917288 125918860 THE1C-int 1605 + 0 1594 35220 16 9 10 84 0 54 54 0 1 103 11 19 102 87 43 193 1 0 19 0 1 42 3 12 252 6 7 110 8 14 22 30 18 229 2 1 178 2 1 9 chain 191904 chrX 155270560 + 125935378 125937620 L1P2 5180 - 417 3423 19872 212 0 3 862 3 0 515 1 0 363 0 760 189 0 1 4 0 4 93 chain 118665 chrX 155270560 + 125937621 125939332 L1PA5 6144 + 4759 6144 31546 176 327 0 359 1 0 30 0 1 488 0 1 173 2 0 6 0 2 149 chain 18405 chrX 155270560 + 125973491 125973703 AluSg4 309 + 35 247 131763 212 chain 8821 chrX 155270560 + 125981432 125981534 L1PA4 6152 + 6039 6141 166546 102 chain 33631 chrX 155270560 + 125982909 125983287 L1PA5 6144 - 2271 2649 78063 378 chain 199018 chrX 155270560 + 125983287 125985536 L1PA5 6144 + 3886 6140 19278 1459 0 5 790 chain 26393 chrX 155270560 + 125987298 125987746 L1MA1 4479 - 1100 1538 98439 83 7 0 33 0 3 10 0 5 7 8 1 80 2 0 15 2 1 69 1 2 36 5 6 37 8 6 17 11 10 17 chain 9457 chrX 155270560 + 125991351 125991500 L1MA1 4479 + 242 379 163286 37 12 2 79 2 0 19 chain 29302 chrX 155270560 + 125997029 125997492 LTR7 482 + 0 482 87559 69 29 17 15 15 14 109 8 9 33 8 40 4 1 0 172 chain 300785 chrX 155270560 + 125997494 126001307 HERVH-int 3825 + 0 3825 13380 90 8 0 8 0 8 227 1 0 200 1 0 12 72 59 14 1 0 13 29 25 35 7 6 82 1 0 84 10 9 907 0 1 38 8 9 169 4 8 82 10 15 131 0 1 68 0 1 78 0 6 6 7 1 103 5 5 371 6 7 196 10 29 494 0 2 225 chain 31165 chrX 155270560 + 126002563 126002975 LTR7 482 + 0 482 82227 69 8 46 109 8 40 218 chain 4376 chrX 155270560 + 126011434 126011482 L1PBa 3878 - 3665 3713 202241 48 chain 10008 chrX 155270560 + 126019739 126019855 L1P2 5180 + 1846 1962 160544 116 chain 89453 chrX 155270560 + 126030744 126031797 MER11B 1079 - 15 1079 39822 292 6 0 435 4 21 316 chain 186969 chrX 155270560 + 126047915 126049947 L1PA2 6032 - 2 2035 20336 148 0 1 1884 chain 381431 chrX 155270560 + 126056931 126063377 L1PB1 5432 - 28 5420 10719 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 16 6 6 3 0 15 1 0 44 19 17 50 1156 55 10 1 2 209 6 8 71 4 3 191 3 0 39 13 21 226 0 19 137 17 22 22 2 1 61 0 5 94 1 0 4 0 1 13 5 4 26 0 1 21 0 1 176 2 0 485 1 0 240 0 1 67 0 4 31 9 11 54 6 0 39 9 10 262 1 0 4 0 9 10 40 26 112 7 12 246 1 9 141 0 34 293 3 5 223 21 12 78 6 5 74 0 2 25 44 44 18 1 0 806 0 2 317 1 0 4 chain 19184 chrX 155270560 + 126057591 126057847 L1PB1 5432 - 329 587 129574 209 6 8 41 chain 10999 chrX 155270560 + 126072503 126072640 MLT2A1 477 + 271 407 156211 114 1 0 22 chain 434325 chrX 155270560 + 126073219 126078622 HERVL-int 5654 - 0 5654 9207 6 0 1 203 1 4 5 0 1 20 0 3 135 0 1 55 9 10 299 0 1 517 9 142 426 1 105 468 2 1 5 0 1 595 0 2 665 8 16 266 0 1 4 1 0 572 0 1 681 0 1 252 9 0 189 chain 7609 chrX 155270560 + 126078718 126078815 HERVL-int 5654 - 4554 4651 173487 97 chain 28367 chrX 155270560 + 126079108 126079492 MLT2A1 477 - 86 477 91705 179 1 3 34 28 33 142 chain 499294 chrX 155270560 + 126080773 126086870 L1PA5 6144 + 1 6142 6872 112 7 21 382 0 1 435 25 0 217 9 0 247 0 1 10 1 0 347 0 1 538 34 3 33 0 93 721 0 1 339 1 2 1152 6 7 1315 10 11 145 4 0 7 chain 12630 chrX 155270560 + 126089297 126089433 L1PA2 6032 + 5895 6031 149726 136 chain 16038 chrX 155270560 + 126094697 126094914 L1PA8 5853 + 5639 5852 138255 37 4 3 10 1 0 51 2 1 19 1 0 92 chain 57200 chrX 155270560 + 126095973 126097555 MER4E 760 + 0 760 54406 23 0 1 130 1 2 13 6 7 85 0 2 9 2 1 90 1 3 81 519 0 82 309 0 5 1 0 155 0 1 70 chain 45877 chrX 155270560 + 126096420 126096933 MER9a2 513 + 0 513 62147 513 chain 4498 chrX 155270560 + 126099701 126099776 MSTB1 431 - 13 90 200805 17 11 13 47 chain 58334 chrX 155270560 + 126103139 126104075 L1PA11 4918 + 3729 4629 53788 245 0 6 6 6 0 217 0 1 10 0 3 111 5 0 10 2 0 50 7 6 78 2 0 16 1 0 13 50 38 15 1 0 13 21 13 5 1 0 8 1 0 5 19 13 18 chain 58186 chrX 155270560 + 126107024 126107666 L1PA4 6152 + 5503 6146 53877 394 0 1 248 chain 46120 chrX 155270560 + 126119436 126120052 PABL_A 660 + 0 652 61927 118 20 6 49 0 39 272 1 10 25 1 0 109 0 3 21 chain 66909 chrX 155270560 + 126122711 126123629 PABL_A-int 1935 + 98 1012 49680 7 2 0 33 10 8 154 1 0 109 14 16 274 2 1 185 0 1 102 1 0 24 chain 47044 chrX 155270560 + 126125330 126125974 PABL_A 660 + 0 660 61170 45 13 0 83 14 0 8 0 2 35 0 39 294 1 4 9 1 0 141 chain 40817 chrX 155270560 + 126128512 126129073 MLT2A2 560 + 0 560 68152 237 30 22 140 3 14 122 5 1 24 chain 21600 chrX 155270560 + 126165982 126166214 L1PA4 6152 - 12 244 121769 232 chain 26637 chrX 155270560 + 126171455 126171767 L1PA7 6471 - 3 316 97521 153 2 3 157 chain 502588 chrX 155270560 + 126184816 126190933 L1PA6 6164 - 8 6162 6691 137 4 3 697 1 5 886 0 1 897 1 2 338 0 1 4 1 0 40 1 5 24 0 1 174 0 1 185 0 1 49 0 1 303 0 1 30 0 1 43 0 1 45 5 9 79 0 1 93 14 17 287 0 1 1149 6 11 123 2 1 258 18 25 30 1 2 192 chain 2822 chrX 155270560 + 126192315 126192347 MLT2B1 522 + 483 515 228432 32 chain 480644 chrX 155270560 + 126236232 126242020 L1PA6 6164 + 0 6162 7708 324 0 10 426 2 1 285 0 338 408 10 11 31 5 0 469 0 1 28 0 2 79 1 17 341 0 1 4 2 1 405 2 3 245 0 1 274 3 0 614 1 0 123 0 1 206 1 0 669 9 14 776 2 1 6 0 10 37 chain 558101 chrX 155270560 + 126250680 126256712 L1PA2 6032 - 0 6032 492 6032 chain 63827 chrX 155270560 + 126276279 126277016 L1PA7 6471 + 5732 6469 51087 737 chain 33055 chrX 155270560 + 126294173 126294547 L1PA4 6152 - 1057 1431 79128 374 chain 95369 chrX 155270560 + 126294547 126295604 L1PA4 6152 + 5086 6143 37993 1057 chain 45953 chrX 155270560 + 126323746 126324315 L1PA7 6471 + 5896 6464 62078 298 2 1 140 6 7 110 1 0 12 chain 37435 chrX 155270560 + 126335432 126335855 L1PA5 6144 - 16 439 72914 423 chain 211240 chrX 155270560 + 126335855 126338248 L1PA5 6144 + 3314 5714 18419 515 2 1 233 0 1 563 0 1 512 0 2 155 0 4 413 chain 37752 chrX 155270560 + 126342257 126342776 MLT2A2 560 - 0 560 72486 30 0 4 113 6 17 182 19 45 169 chain 59151 chrX 155270560 + 126344788 126345569 MER4E1 777 + 0 777 53303 17 5 0 83 8 11 426 19 12 26 0 5 197 chain 462150 chrX 155270560 + 126348713 126353875 L1PA3long 6157 + 982 6147 8321 2087 0 1 92 1 3 1574 1 0 158 0 1 1249 chain 28120 chrX 155270560 + 126359636 126359945 L1PA3long 6157 - 0 309 92576 309 chain 42577 chrX 155270560 + 126359945 126360420 L1P1 4361 + 3855 4328 65930 296 1 0 154 1 0 23 chain 225201 chrX 155270560 + 126362055 126364818 HERVH-int 3825 + 1073 3825 17581 156 16 1 199 9 0 4 1 0 139 5 0 39 1 0 168 0 1 220 0 4 86 0 5 97 0 1 41 0 2 61 0 1 1110 36 37 282 0 5 93 chain 25708 chrX 155270560 + 126366612 126366977 LTR7 482 + 0 451 101253 87 0 50 87 0 1 42 0 32 5 0 1 60 1 2 52 13 14 18 chain 519512 chrX 155270560 + 126384446 126390469 L1PA4 6152 - 1 6146 5213 16 3 0 480 0 1 1025 2 0 162 3 2 113 0 4 1225 10 6 409 0 5 1446 12 11 9 1 2 335 11 139 54 7 0 131 1 0 421 0 1 116 0 1 31 chain 26563 chrX 155270560 + 126397683 126397982 L1PA4 6152 + 5369 5668 97190 299 chain 75351 chrX 155270560 + 126397982 126398855 L1PA4 6152 - 1736 2622 45844 478 10 0 10 0 10 205 5 18 165 chain 126089 chrX 155270560 + 126398857 126400284 L1PA4 6152 + 4715 6140 29067 1177 1 0 242 1 0 6 chain 337475 chrX 155270560 + 126412568 126418567 L1PB1 5432 + 580 5417 11964 92 653 57 20 5 1 7 0 5 13 9 11 243 0 1 196 0 2 73 2 1 92 25 17 97 0 2 18 6 4 170 0 1 646 0 1 127 1 0 10 8 5 26 10 11 120 0 2 38 4 5 59 313 70 7 3 0 677 5 9 17 0 1 39 364 29 103 0 31 226 0 1 365 0 2 298 0 4 71 0 2 50 0 1 49 0 2 296 1 2 9 1 0 24 3 2 6 1 0 12 5 1 8 2 0 39 20 19 11 1 0 44 1 0 16 3 0 6 16 6 19 7 4 15 2 0 17 8 7 21 1 0 13 1 0 13 chain 3990 chrX 155270560 + 126418702 126418746 L1M4c 1769 - 46 90 207524 44 chain 4749 chrX 155270560 + 126429877 126429952 L1P4 1494 - 347 420 197922 34 6 4 35 chain 22562 chrX 155270560 + 126432753 126433143 L1PA13 3608 + 3131 3488 117754 29 1 0 114 3 1 61 1 0 20 4 0 23 10 7 10 2 0 26 20 5 16 2 0 5 2 0 18 1 0 22 chain 66154 chrX 155270560 + 126464931 126465654 L1PA3long 6157 - 1102 1825 49935 723 chain 98506 chrX 155270560 + 126465654 126466738 L1PA3long 6157 + 5054 6139 37159 769 0 1 315 chain 85955 chrX 155270560 + 126487919 126488927 LTR5A 1029 + 0 1029 41173 26 3 5 103 0 13 732 0 6 144 chain 561774 chrX 155270560 + 126496206 126502231 L1HS 6032 + 1 6032 298 6009 0 6 16 chain 70909 chrX 155270560 + 126504792 126505721 THE1A-int 1579 - 662 1579 47961 414 37 25 478 chain 4793 chrX 155270560 + 126521526 126521718 MLT1A 405 + 0 191 197435 25 62 65 27 40 38 19 2 0 17 chain 68156 chrX 155270560 + 126528618 126529485 LTR12 884 + 0 884 49180 55 0 41 244 1 2 36 2 0 13 23 0 493 chain 472909 chrX 155270560 + 126529513 126535257 HERV9-int 5642 + 0 5642 7948 283 11 14 130 3 5 166 7 5 109 0 4 79 1 0 232 80 0 76 1 0 267 0 10 1448 0 1 238 1 0 2164 1 0 226 10 8 32 3 1 9 4 3 14 2 1 60 1 0 13 37 14 10 4 0 3 2 0 17 chain 67360 chrX 155270560 + 126536746 126537502 L1PA4 6152 + 5377 6143 49505 233 0 10 523 chain 5085 chrX 155270560 + 126551774 126551830 L1PA8 5853 + 5797 5853 194232 56 chain 156139 chrX 155270560 + 126553283 126555537 L1PBa 3878 - 130 2349 23842 11 2 0 12 9 8 409 0 5 74 14 16 103 0 3 46 3 5 15 2 1 243 0 3 78 3 0 7 7 3 42 0 1 4 1 0 100 1 0 94 2 0 192 8 9 58 10 11 47 0 5 39 49 1 30 28 29 127 0 1 69 1 0 61 0 4 253 chain 171516 chrX 155270560 + 126566671 126569069 L1PA10 4194 - 33 2466 21881 11 1 0 26 16 12 5 0 2 15 11 8 170 2 3 208 11 19 24 1 0 264 0 1 249 1 0 63 1 2 5 0 1 112 1 0 209 0 4 68 0 4 20 7 39 162 0 2 11 0 1 153 72 62 58 1 0 440 chain 16697 chrX 155270560 + 126572899 126573089 L1PA4 6152 + 5946 6136 136413 190 chain 5101 chrX 155270560 + 126584596 126584657 LTR26 622 - 183 244 194068 61 chain 397289 chrX 155270560 + 126607395 126612849 L1PB1 5432 + 39 5424 10189 317 28 0 8 5 4 9 0 6 20 1 0 9 0 1 460 1 2 234 9 11 275 45 25 125 0 4 142 0 5 304 5 2 349 0 2 141 4 0 12 0 1 11 0 2 90 4 9 6 5 0 281 74 69 38 0 1 14 0 1 637 0 1 29 0 1 24 0 6 204 0 1 235 0 4 312 27 32 113 3 0 170 22 23 102 1 0 4 0 1 171 36 19 20 1 0 8 1 0 12 4 0 9 2 0 53 2 1 16 1 0 44 1 0 10 29 17 19 9 6 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 147555 chrX 155270560 + 126617477 126619100 L1PA3long 6157 - 0 1628 24952 12 1 4 855 0 1 621 0 1 134 chain 71887 chrX 155270560 + 126619100 126619885 L1PA3long 6157 + 3735 4520 47484 785 chain 76112 chrX 155270560 + 126625663 126626685 MER11A 1151 - 0 1151 45416 78 0 1 88 0 1 16 1 0 30 1 2 14 0 1 37 17 48 145 5 6 140 0 7 9 11 5 79 0 1 127 0 1 21 4 0 63 0 93 28 0 2 108 chain 10332 chrX 155270560 + 126649874 126650000 L1PA3long 6157 - 2 129 158978 77 1 2 48 chain 98846 chrX 155270560 + 126660965 126662058 L1PA4 6152 + 5056 6152 37063 418 0 2 532 0 1 143 chain 111912 chrX 155270560 + 126690691 126692387 L1PB1 5432 - 2 1651 33689 6 1 0 4 1 0 16 1 0 13 1 0 21 1 0 24 59 46 4 1 0 12 8 7 40 1 0 15 3 2 41 0 2 10 2 0 9 16 11 13 2 0 20 25 11 258 35 33 8 2 0 183 3 0 24 0 1 279 0 1 289 1 2 244 chain 3717 chrX 155270560 + 126692427 126692468 MER95 416 - 218 259 211673 41 chain 3980 chrX 155270560 + 126695454 126695542 MSTA 426 - 232 359 207677 24 18 62 30 6 1 10 chain 25694 chrX 155270560 + 126696839 126697196 L1PA10 4194 - 33 385 101310 11 1 0 34 3 0 27 6 5 275 chain 129408 chrX 155270560 + 126713911 126715392 L1PA5 6144 - 0 1480 28222 113 1 0 1367 chain 128329 chrX 155270560 + 126720010 126721434 L1PA3long 6157 + 4732 6157 28487 1413 0 1 11 chain 47390 chrX 155270560 + 126724652 126725181 L1PA4 6152 + 5619 6152 60907 206 1 0 316 0 5 6 chain 107880 chrX 155270560 + 126726492 126727690 L1PA3long 6157 - 0 1201 34761 620 0 1 337 1 3 240 chain 101885 chrX 155270560 + 126727690 126728801 L1PA3long 6157 + 3835 4947 36221 111 0 1 1000 chain 63546 chrX 155270560 + 126739266 126740083 HERVL-int 5654 + 0 829 51221 120 5 10 115 18 14 277 0 5 48 3 5 143 0 4 88 chain 239644 chrX 155270560 + 126744829 126747468 L1PA3long 6157 + 3506 6150 16793 469 0 1 1331 0 5 770 1 0 68 chain 173939 chrX 155270560 + 126759913 126761851 L1PA4 6152 + 4215 6151 21598 420 2 0 1516 chain 103237 chrX 155270560 + 126795993 126797506 LTR12C 1709 - 0 1709 35941 70 9 8 4 1 0 186 0 1 35 102 0 63 0 1 113 11 4 14 25 1 53 0 1 37 4 2 4 1 0 104 0 278 349 0 43 42 5 1 6 0 1 7 0 4 243 1 10 24 chain 17287 chrX 155270560 + 126847032 126847265 L1PA8 5853 - 0 245 134815 92 2 1 19 2 1 32 1 16 13 1 0 71 chain 12721 chrX 155270560 + 126856430 126856587 THE1D-int 1627 + 1447 1604 149373 157 chain 46033 chrX 155270560 + 126863392 126864003 L1PA8 5853 - 9 605 62011 84 1 0 19 2 1 61 1 0 71 2 0 44 1 0 46 2 0 18 8 0 229 5 6 17 chain 70653 chrX 155270560 + 126893151 126893971 L1PA7 6471 - 5 825 48084 792 0 1 5 1 0 22 chain 81047 chrX 155270560 + 126909836 126910901 MER11A 1151 + 15 1151 43169 65 0 8 55 0 5 79 1 5 62 0 11 377 6 9 12 1 2 40 0 4 113 3 0 24 0 35 44 0 1 32 10 9 80 1 0 24 0 4 36 chain 519845 chrX 155270560 + 126922780 126928872 L1PA4 6152 + 3 6140 5178 119 5 19 93 10 7 17 1 2 202 0 1 593 8 9 133 17 20 541 0 1 236 0 4 30 2 1 397 0 3 259 0 1 492 1 0 24 1 0 482 2 0 1298 0 2 312 1 5 380 1 18 77 0 1 358 chain 67827 chrX 155270560 + 126934110 126934846 L1PA2 6032 - 2971 3707 49200 736 chain 268835 chrX 155270560 + 126934846 126937813 L1PA2 6032 + 3060 6026 15242 1845 2 1 1120 chain 65540 chrX 155270560 + 126950198 126950977 LTR17 781 - 0 781 50319 11 2 0 247 0 1 180 0 4 11 1 0 327 chain 125906 chrX 155270560 + 126971654 126973215 THE1A-int 1579 - 11 1579 29130 310 0 2 500 1 0 4 0 1 85 0 1 161 1 0 202 2 0 274 0 7 21 chain 26536 chrX 155270560 + 126973225 126973565 THE1A 353 - 10 353 97908 141 1 0 91 2 1 83 0 5 22 chain 69657 chrX 155270560 + 126976369 126977134 L1PA3long 6157 - 0 763 48546 5 2 0 758 chain 60230 chrX 155270560 + 126977134 126977796 L1PA3long 6157 + 4723 5385 52672 662 chain 29366 chrX 155270560 + 126982541 126983008 MER4A1 472 - 1 472 87219 67 18 19 109 48 51 9 3 0 151 0 1 10 2 1 4 0 1 32 0 2 14 chain 67446 chrX 155270560 + 126989270 126990157 L1PA10 4194 - 44 961 49471 33 3 0 125 0 22 68 7 13 146 7 9 100 0 1 17 1 2 149 1 2 230 chain 32771 chrX 155270560 + 126998245 126998794 L1PB2 3958 + 3265 3803 79577 21 4 5 18 2 0 52 1 0 13 5 0 15 9 16 33 2 0 13 4 0 92 1 2 34 1 0 5 1 2 31 1 0 64 1 0 62 13 11 21 1 0 13 1 0 15 chain 70842 chrX 155270560 + 127023399 127024195 L1PA4 6152 + 5355 6152 47993 683 0 1 113 chain 29448 chrX 155270560 + 127039530 127039910 MLT2A1 477 + 0 385 86860 142 0 1 26 6 10 206 chain 26207 chrX 155270560 + 127051706 127052162 LTR2 463 + 0 463 99173 136 92 97 31 0 1 104 24 26 12 1 0 56 chain 173300 chrX 155270560 + 127069957 127072332 HERVL-int 5654 - 2784 5143 21677 239 14 8 49 2 3 28 2 0 267 1 0 554 1 0 52 9 18 142 0 1 36 1 0 4 0 1 39 10 6 37 5 7 28 13 0 5 0 13 196 11 0 7 0 3 140 1 0 43 0 1 15 0 2 245 16 15 17 30 28 98 7 1 11 chain 38023 chrX 155270560 + 127073162 127073689 MLT2A2 560 - 2 556 72090 143 1 12 170 35 43 10 3 11 165 chain 5302 chrX 155270560 + 127080315 127080379 LTR26E 604 + 17 81 192004 64 chain 5490 chrX 155270560 + 127080383 127080455 MER4D1 891 - 4 75 190137 66 1 0 5 chain 75562 chrX 155270560 + 127101970 127103010 MER11A 1151 - 0 1151 45739 66 1 0 87 5 4 101 1 33 16 0 28 69 0 4 37 3 4 11 6 9 138 0 12 23 24 40 164 0 11 66 1 0 28 1 0 115 1 9 76 chain 5772 chrX 155270560 + 127117446 127117511 THE1D 372 - 89 154 187423 65 chain 118296 chrX 155270560 + 127157946 127159526 THE1B-int 1605 - 5 1605 31690 140 9 10 14 1 0 18 0 1 385 18 5 86 7 10 216 0 1 133 16 16 10 0 1 8 0 1 89 3 28 319 0 1 108 chain 20952 chrX 155270560 + 127169009 127169874 L1M1 2793 + 536 1224 124095 4 1 0 14 2 0 8 3 0 8 1 0 9 1 0 12 3 0 7 370 282 11 7 5 5 1 0 98 103 27 20 1 0 56 0 1 33 4 6 39 1 0 43 chain 39220 chrX 155270560 + 127229328 127229870 THE1B-int 1605 - 1032 1601 70431 76 38 65 428 chain 11102 chrX 155270560 + 127233270 127233403 THE1A 353 - 0 133 155795 133 chain 76590 chrX 155270560 + 127233411 127234389 L1PA8 5853 - 0 974 45169 14 1 2 77 1 0 19 2 1 132 2 0 42 7 6 280 0 2 259 0 1 5 11 8 126 chain 23387 chrX 155270560 + 127234393 127234703 L1PA8 5853 + 4564 4876 113720 177 15 16 95 0 1 23 chain 119548 chrX 155270560 + 127234946 127236508 THE1A-int 1579 - 7 1577 31202 94 1 0 40 8 9 59 1 0 209 0 1 63 4 5 54 1 8 36 3 1 9 0 2 6 2 0 353 1 2 204 0 1 414 chain 24684 chrX 155270560 + 127248037 127248477 MER4A1 472 - 0 472 106527 68 30 34 83 47 68 97 4 5 51 17 21 29 0 2 14 chain 51483 chrX 155270560 + 127251022 127252150 MER4-int 2692 - 1874 2618 57982 21 0 13 35 0 2 37 1 0 17 0 2 200 365 0 41 3 0 65 54 22 245 0 1 13 6 5 25 chain 3429 chrX 155270560 + 127256762 127256798 U1 164 + 0 36 216577 36 chain 150326 chrX 155270560 + 127270122 127271768 L1PA3long 6157 + 4508 6154 24560 1079 0 1 252 1 0 314 chain 379007 chrX 155270560 + 127282469 127287758 L1PA8 5853 + 562 5836 10790 16 15 0 6 0 15 39 103 104 14 2 3 5 1 0 382 0 3 5 2 0 298 9 7 530 6 7 30 2 0 747 15 13 83 1 2 15 9 10 38 17 21 144 1 5 83 24 17 10 9 0 6 3 0 84 11 12 161 0 2 237 0 1 227 6 0 74 0 1 445 22 0 336 20 23 64 2 14 108 2 0 229 0 4 125 0 1 196 10 9 35 2 0 50 5 4 17 1 0 8 5 6 47 2 1 19 1 0 15 0 8 53 chain 151198 chrX 155270560 + 127291315 127293612 L1PB1 5432 - 9 2421 24450 19 1 0 13 8 7 14 1 0 26 2 0 12 1 0 5 3 1 20 9 1 5 3 0 4 1 0 16 1 0 44 1 0 11 6 5 52 2 0 9 27 21 24 27 11 59 0 124 116 1 9 112 13 12 44 3 4 40 4 0 54 4 0 241 0 7 84 0 1 188 17 16 161 9 10 82 4 6 179 9 10 53 0 1 150 11 14 76 5 6 61 0 1 63 0 21 87 chain 323850 chrX 155270560 + 127312636 127317161 L1PA11 4918 + 2 4504 12446 8 1 0 5 1 0 27 2 0 30 19 16 27 1 0 13 2 0 14 0 1 37 5 4 29 9 6 54 6 7 67 22 27 86 1 0 525 0 1 56 2 1 211 0 1 40 0 4 50 2 0 190 8 9 198 0 1 5 1 0 59 3 0 136 2 5 95 1 0 180 13 24 7 11 0 38 0 2 26 6 7 4 1 0 293 1 0 83 3 4 363 1 2 212 15 24 199 0 2 493 1 0 321 11 6 47 59 36 23 5 0 6 0 5 22 2 0 11 2 1 16 chain 130692 chrX 155270560 + 127322633 127324395 L1PBa 3878 + 597 2359 27925 27 1 0 202 21 23 89 0 1 30 0 5 441 1 2 188 10 13 480 14 0 243 0 3 15 chain 527014 chrX 155270560 + 127332923 127339073 L1PA5 6144 + 3 6144 4500 3161 1 0 877 0 1 135 0 1 1092 0 2 11 6 4 490 1 7 169 11 13 6 2 0 89 42 26 57 chain 58896 chrX 155270560 + 127341615 127342329 LTR30 714 + 0 714 53460 275 2 1 173 8 9 256 chain 33291 chrX 155270560 + 127344579 127345019 LTR30 714 + 0 443 78742 225 1 0 28 0 5 11 8 7 120 0 1 4 3 2 40 chain 15969 chrX 155270560 + 127345026 127345271 LTR30 714 + 461 704 138458 171 35 34 25 1 0 13 chain 139538 chrX 155270560 + 127346310 127349067 L1PB1 5432 + 3100 5392 26212 50 9 0 135 29 20 13 1 0 217 41 44 157 11 6 211 29 20 221 0 1 143 0 5 280 4 0 6 43 19 162 5 0 209 4 1 31 11 13 15 577 189 12 6 5 11 24 12 18 25 20 24 1 0 22 chain 32618 chrX 155270560 + 127350705 127351081 L1PA7 6471 + 6093 6470 79821 155 0 1 221 chain 38188 chrX 155270560 + 127393204 127393624 L1PA4 6152 + 5731 6151 71850 420 chain 16611 chrX 155270560 + 127449349 127449554 L1PB1 5432 - 1487 1692 136633 205 chain 104596 chrX 155270560 + 127449559 127451096 L1PB1 5432 + 3937 5420 35600 47 1 2 6 1 0 629 0 1 181 2 1 175 0 2 109 41 18 6 4 0 20 1 0 12 1 0 10 20 14 50 0 2 15 1 0 24 1 0 4 0 1 11 8 7 12 3 0 6 18 8 17 2 0 5 1 0 14 3 1 23 1 0 21 1 0 13 4 3 13 chain 25201 chrX 155270560 + 127478608 127478980 THE1C 375 - 0 375 103735 25 1 0 136 10 13 41 0 1 34 3 0 42 5 6 12 1 3 62 chain 102561 chrX 155270560 + 127483358 127484642 L1PA7 6471 - 1689 2962 36097 101 0 1 253 27 16 400 0 1 5 4 1 289 4 1 166 0 4 35 chain 132246 chrX 155270560 + 127484642 127486317 L1PA7 6471 + 4789 6466 27577 194 0 2 231 1 2 67 0 1 328 0 2 5 4 0 12 0 11 19 11 1 39 0 1 306 0 2 41 16 14 241 10 11 136 3 0 11 chain 20884 chrX 155270560 + 127497279 127497533 THE1D-int 1627 - 1297 1552 124343 44 0 1 210 chain 57087 chrX 155270560 + 127510714 127511336 L1PA5 6144 + 4549 5170 54482 276 1 0 345 chain 82138 chrX 155270560 + 127511368 127512314 L1PA5 6144 + 5171 6128 42708 123 0 1 172 0 1 342 1 2 298 0 8 10 chain 29526 chrX 155270560 + 127516506 127516814 AluYb8 318 + 0 308 86542 308 chain 149071 chrX 155270560 + 127524860 127526650 L1PA8 5853 + 4071 5853 24743 194 1 0 69 4 0 501 0 1 175 0 2 551 1 0 45 2 0 69 16 14 7 0 1 40 2 1 19 1 0 93 chain 25899 chrX 155270560 + 127549559 127549923 MLT2A1 477 + 0 372 100446 44 4 6 89 6 7 22 1 5 22 8 9 168 chain 455802 chrX 155270560 + 127550070 127555720 HERVL-int 5654 + 27 5654 8551 30 13 13 34 2 1 372 0 1 85 0 1 40 0 1 265 0 5 1053 57 5 82 0 1 64 0 9 250 0 1 85 0 4 86 1 12 80 37 19 213 0 1 122 1 4 97 15 18 271 0 3 1012 0 4 89 0 1 140 11 6 757 0 3 67 0 1 219 chain 29404 chrX 155270560 + 127555720 127556194 MLT2A1 477 + 0 477 87050 48 0 2 88 0 1 29 1 5 28 3 4 146 35 49 10 14 0 10 7 0 17 1 3 37 chain 8823 chrX 155270560 + 127556217 127556399 L1PB1 5432 + 5242 5404 166538 39 1 0 15 3 0 16 10 1 13 9 6 14 2 0 24 1 0 22 1 0 12 chain 29816 chrX 155270560 + 127560773 127561166 MLT2A1 477 - 82 477 85390 10 4 0 182 0 1 29 5 9 22 1 2 140 chain 14639 chrX 155270560 + 127571120 127571284 L1PA3long 6157 + 5993 6157 142460 164 chain 277080 chrX 155270560 + 127577785 127581146 L1PA7 6471 - 17 3383 14808 146 0 1 19 1 0 6 1 2 631 0 1 27 2 0 858 0 1 742 6 8 15 4 1 448 0 4 58 1 2 396 chain 28919 chrX 155270560 + 127583882 127584190 AluYb8 318 - 10 318 89374 308 chain 5376 chrX 155270560 + 127613394 127613451 L1PA7 6471 - 1457 1514 191238 57 chain 42873 chrX 155270560 + 127613457 127613947 L1PA7 6471 - 1516 2010 65355 277 0 4 213 chain 120422 chrX 155270560 + 127613947 127615382 L1PA7 6471 + 5026 6467 30896 596 2 0 51 0 1 168 0 1 69 0 6 389 1 4 6 3 0 150 chain 23626 chrX 155270560 + 127624512 127624792 AluSp 311 + 14 294 112429 280 chain 3005 chrX 155270560 + 127640469 127640801 L1MA9 1812 - 118 389 224941 17 101 61 33 165 144 16 chain 22033 chrX 155270560 + 127644342 127644625 AluSq2 311 + 15 294 120097 102 0 2 9 6 0 166 chain 383058 chrX 155270560 + 127671372 127676788 L1PA8A 6298 - 31 5158 10662 53 12 23 8 3 0 7 11 3 21 4 6 36 1 22 71 11 12 268 6 0 167 13 15 26 12 11 223 4 5 206 6 7 248 5 6 199 1 0 343 10 19 388 44 45 131 2 1 272 0 4 27 1 2 101 11 10 190 0 1 122 0 1 29 2 8 56 0 3 88 0 3 180 0 1 92 29 0 149 1 0 590 0 3 10 0 3 130 1 0 143 1 0 52 0 1 82 313 0 204 chain 4689 chrX 155270560 + 127686945 127687218 L1MA6 2487 + 2339 2484 198647 40 200 73 8 1 0 24 chain 48215 chrX 155270560 + 127688142 127688900 L1PA13 3608 + 2759 3488 60306 191 15 16 85 9 8 98 7 6 110 2 0 62 1 0 14 0 1 41 1 0 5 2 0 25 17 6 12 20 9 19 1 0 21 chain 31323 chrX 155270560 + 127697961 127698376 L1PBa 3878 + 1976 2398 81951 83 0 1 248 17 24 27 6 5 34 chain 118136 chrX 155270560 + 127709074 127710390 L1PA4 6152 + 4828 6146 31758 479 0 1 730 0 1 107 chain 282473 chrX 155270560 + 127726577 127731114 L1PA10 4194 - 112 4019 14507 178 1 0 130 312 0 123 0 2 54 0 1 189 0 1 27 1 0 665 300 0 24 5 13 28 1 9 20 0 1 4 21 3 381 1 5 82 5 8 115 0 4 116 2 0 143 0 4 104 0 2 23 1 2 327 0 4 178 0 1 22 5 6 74 0 1 524 3 0 11 0 2 64 63 51 21 2 0 11 44 30 8 1 0 14 2 0 10 0 5 7 1 0 5 47 38 6 3 0 16 2 0 10 chain 95175 chrX 155270560 + 127740409 127741795 LTR12C 1709 + 0 1709 38042 24 51 60 207 12 13 23 1 0 50 0 1 36 6 7 43 9 1 8 14 0 52 0 1 226 0 366 90 24 0 16 14 7 39 0 3 26 5 2 240 1 0 86 1 0 82 chain 20594 chrX 155270560 + 127743121 127743400 AluSc 308 + 1 302 125317 58 16 0 94 0 31 14 0 7 97 chain 3452 chrX 155270560 + 127765424 127765463 MER58B 340 - 14 53 216187 39 chain 93901 chrX 155270560 + 127779212 127780681 L1PB1 5432 - 8 1569 38383 6 1 0 14 1 0 11 1 0 23 1 0 24 2 0 14 1 0 5 3 1 17 8 0 13 10 8 7 1 0 44 1 0 16 2 1 52 18 12 12 3 2 4 1 0 24 3 0 9 0 120 147 6 5 27 4 2 178 3 0 80 1 0 88 0 6 180 29 34 128 5 6 105 0 1 28 7 8 8 2 0 91 chain 13635 chrX 155270560 + 127782701 127782877 L1PB1 5432 + 4824 5002 145837 28 1 3 147 chain 3277 chrX 155270560 + 127796264 127796301 L1PA6 6164 - 267 304 219412 37 chain 8985 chrX 155270560 + 127796302 127796401 L1PA5 6144 + 6032 6131 165687 99 chain 523718 chrX 155270560 + 127803014 127809490 L1PA7 6471 - 5 6468 4792 6 5 0 145 18 16 166 1 2 268 0 1 245 0 3 318 0 7 464 1 0 148 1 9 186 0 1 223 0 1 276 3 2 59 0 1 90 11 10 186 5 4 55 0 4 16 0 4 64 4 2 384 1 5 18 4 0 187 0 4 245 0 1 165 2 1 366 7 9 325 1 5 895 11 1 358 1 0 23 5 0 80 11 0 26 0 1 137 15 0 50 12 12 183 chain 2993 chrX 155270560 + 127813581 127813613 MER58A 224 - 17 49 225192 32 chain 118311 chrX 155270560 + 127820122 127821433 L1PA3long 6157 - 0 1317 31685 15 3 0 881 0 9 412 chain 111157 chrX 155270560 + 127824034 127825264 L1PA3long 6157 - 0 1229 33893 779 1 0 450 chain 5211 chrX 155270560 + 127836840 127836977 MLT1A 405 + 0 147 192910 44 56 67 26 1 0 10 chain 77416 chrX 155270560 + 127837900 127838814 L1PA7 6471 + 5548 6467 44768 72 2 1 35 0 6 805 chain 42262 chrX 155270560 + 127844426 127844918 L1PA5 6144 + 5625 6137 66315 116 0 20 376 chain 4379 chrX 155270560 + 127847804 127847857 MER53 195 - 131 184 202205 53 chain 19862 chrX 155270560 + 127849808 127850094 L1PA8 5853 + 5573 5853 127615 25 12 10 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 47649 chrX 155270560 + 127852689 127853246 L1PA8A 6298 - 10 565 60739 101 1 0 118 1 0 336 chain 16121 chrX 155270560 + 127854057 127854340 L1PB3 3668 - 102 372 137992 31 9 7 24 2 1 21 20 4 66 17 23 93 chain 556048 chrX 155270560 + 127866716 127872868 L1PA3long 6157 + 0 6155 717 5310 0 4 696 1 0 145 chain 25884 chrX 155270560 + 127877549 127877839 AluYk4 311 + 0 291 100512 108 0 1 182 chain 15921 chrX 155270560 + 127882146 127882496 L1PB1 5432 - 10 327 138606 18 1 0 13 1 0 21 1 0 24 2 0 5 17 14 19 16 6 6 1 0 12 8 7 38 1 0 18 2 1 51 2 0 11 6 2 10 1 0 12 1 0 8 12 9 12 chain 6089 chrX 155270560 + 127883230 127883307 L1P5 443 - 6 84 184493 33 0 1 44 chain 15741 chrX 155270560 + 127890149 127890324 AluSq10 312 - 4 179 139143 175 chain 36562 chrX 155270560 + 127891029 127891594 L1MA3 4352 - 70 612 74156 23 2 0 79 1 0 43 64 44 353 chain 55340 chrX 155270560 + 127891751 127892422 L1PA8 5853 + 5189 5853 55497 375 1 0 46 2 0 69 1 0 11 1 0 50 2 1 21 1 0 91 chain 3184 chrX 155270560 + 127899863 127899933 MER77B 728 + 310 381 221235 36 22 23 12 chain 544527 chrX 155270560 + 127916633 127922648 L1PA3long 6157 + 0 6156 2139 152 0 1 373 4 0 250 0 128 109 0 6 192 0 5 3144 0 4 344 0 1 1447 chain 40512 chrX 155270560 + 127924998 127925484 L1PA7 6471 - 857 1344 68577 179 0 1 168 1 0 4 0 1 134 chain 72836 chrX 155270560 + 127925484 127926320 L1PA7 6471 + 5626 6465 47107 463 0 1 47 0 2 326 chain 304348 chrX 155270560 + 127926332 127930693 L1PA8 5853 + 1748 5853 13224 158 0 7 112 5 7 48 0 1 125 0 1 106 0 1 456 0 1 105 0 1 15 276 4 23 0 1 9 0 4 111 0 2 155 0 1 12 16 0 61 9 13 20 2 3 6 1 0 52 33 18 146 0 1 155 0 11 652 8 14 359 13 13 271 0 7 54 14 16 169 0 1 308 9 8 36 2 0 70 25 23 26 17 16 17 2 1 92 chain 21004 chrX 155270560 + 127927463 127927724 AluYk4 311 + 26 290 123898 5 0 3 256 chain 73625 chrX 155270560 + 127964829 127965706 L1PA7 6471 - 12 899 46719 138 0 1 11 0 1 169 2 3 425 0 1 26 0 7 61 1 0 44 chain 83452 chrX 155270560 + 127965711 127966804 MER11A 1151 + 0 1151 42137 54 1 100 50 0 1 4 1 0 85 4 0 94 0 1 232 23 0 63 0 1 150 41 24 112 0 1 179 chain 151324 chrX 155270560 + 127976284 127978067 L1PA7 6471 - 1 1789 24428 257 0 6 146 4 5 435 2 0 671 0 1 124 1 0 143 chain 79292 chrX 155270560 + 127980969 127981858 L1PA4 6152 + 5252 6151 43914 334 0 10 555 chain 78085 chrX 155270560 + 127987278 127988321 MER11C 1089 + 0 1059 44470 240 9 18 59 0 4 65 1 0 177 16 15 112 1 5 4 1 0 38 1 2 124 0 1 56 1 0 117 0 1 21 chain 66717 chrX 155270560 + 128022614 128023379 L1PA4 6152 + 5377 6152 49775 304 0 19 198 1 0 217 8 0 37 chain 4157 chrX 155270560 + 128032940 128032984 L1PA5 6144 + 6088 6132 205130 44 chain 21125 chrX 155270560 + 128044727 128045022 AluSq2 311 + 9 291 123473 23 0 1 106 20 8 85 8 6 53 chain 46958 chrX 155270560 + 128051863 128052372 L1PA2 6032 + 5521 6030 61247 509 chain 31871 chrX 155270560 + 128052380 128052751 L1PA5 6144 + 5761 6134 81062 360 0 2 11 chain 65237 chrX 155270560 + 128060039 128060794 L1PA7 6471 - 1 752 50447 65 4 0 686 chain 24455 chrX 155270560 + 128061911 128062192 AluSp 311 + 4 285 107778 281 chain 27693 chrX 155270560 + 128064737 128065091 THE1B 368 + 0 368 94064 40 0 15 117 2 1 5 0 1 114 1 0 75 chain 277100 chrX 155270560 + 128076661 128079704 L1PA3long 6157 - 2 3067 14806 1200 0 28 1722 6 0 115 chain 27539 chrX 155270560 + 128081361 128081682 L1PA7 6471 - 4 325 94535 321 chain 71568 chrX 155270560 + 128088059 128088956 THE1B-int 1605 - 5 1014 47670 138 1 0 5 4 5 7 0 1 173 0 100 440 0 11 129 chain 6063 chrX 155270560 + 128099043 128099111 L1PA5 6144 - 0 68 184715 68 chain 4539 chrX 155270560 + 128104386 128104444 MER121 330 - 123 183 200346 20 0 2 38 chain 71283 chrX 155270560 + 128112209 128114073 L1PB1 5432 + 4270 5430 47811 39 0 1 67 10 10 84 1 5 152 7 8 23 5 1 137 8 9 255 728 54 23 0 3 5 5 0 6 20 17 51 2 1 16 8 7 36 1 0 16 1 0 9 21 7 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 33677 chrX 155270560 + 128114105 128114620 L1MA2 4263 + 3604 4103 78132 58 12 11 116 20 17 51 1 0 99 11 9 93 7 0 15 2 0 30 chain 124238 chrX 155270560 + 128119315 128120846 THE1B-int 1605 + 0 1605 29608 432 11 38 141 0 8 125 0 39 822 chain 132455 chrX 155270560 + 128135656 128137158 L1PA5 6144 + 4632 6135 27534 339 1 0 99 0 1 183 0 1 39 1 0 7 0 1 833 chain 16552 chrX 155270560 + 128142700 128142939 Tigger3a 397 - 51 342 136790 50 0 3 152 16 65 21 chain 98276 chrX 155270560 + 128151582 128152904 L1PB3 3668 - 833 2184 37223 12 1 20 135 2 1 321 0 3 7 2 0 224 2 0 120 1 5 27 7 8 39 0 6 272 1 2 149 chain 173807 chrX 155270560 + 128156566 128158613 L1PA7 6471 + 4424 6464 21612 772 1 0 425 1 0 77 0 2 542 6 0 9 1 0 213 chain 529892 chrX 155270560 + 128178314 128184378 L1PA2 6032 + 121 6032 4202 33 1 0 102 1 0 521 129 1 280 12 15 209 0 1 154 24 0 923 1 0 3204 0 1 462 3 0 5 chain 33436 chrX 155270560 + 128184471 128184841 L1PA3long 6157 + 5774 6144 78510 370 chain 4357 chrX 155270560 + 128191123 128191277 MER58A 224 + 45 195 202481 38 89 85 27 chain 23980 chrX 155270560 + 128198449 128198711 L1PA2 6032 - 0 262 110442 262 chain 5345 chrX 155270560 + 128201145 128201224 L1MB1 2102 + 1372 1445 191589 44 6 0 29 chain 23188 chrX 155270560 + 128215532 128216796 LTR29 598 - 62 545 114737 38 2 0 5 10 12 48 798 7 79 8 17 15 5 14 36 24 23 5 1 0 14 9 10 47 3 0 72 17 13 28 chain 44939 chrX 155270560 + 128218479 128218970 L1PA3long 6157 - 905 1396 62907 491 chain 81497 chrX 155270560 + 128218970 128219861 L1PA3long 6157 + 5258 6149 42973 891 chain 9773 chrX 155270560 + 128219870 128219991 LTR49 580 + 224 346 161726 74 0 1 47 chain 54993 chrX 155270560 + 128222910 128223958 L1MA5A 2387 + 19 2289 55709 16 112 89 20 7 6 6 6 0 25 21 17 4 1 0 38 6 5 33 0 1 111 8 9 26 9 0 233 0 1287 88 1 0 75 1 0 52 2 0 27 21 11 10 5 9 15 14 0 16 0 2 39 chain 11778 chrX 155270560 + 128239539 128239695 MER1A 529 - 0 155 153143 70 9 8 77 chain 9400 chrX 155270560 + 128239736 128239862 MER1B 344 - 110 237 163551 73 8 9 45 chain 12698 chrX 155270560 + 128246119 128246290 MER30 238 - 0 177 149452 48 3 0 70 7 16 43 chain 179086 chrX 155270560 + 128290586 128292580 L1PA4 6152 - 0 1995 21065 339 0 1 1655 chain 146073 chrX 155270560 + 128300821 128302412 L1PA3long 6157 + 4570 6157 25153 1581 4 0 6 chain 43647 chrX 155270560 + 128321998 128322618 LTR9B 643 - 0 643 64633 40 17 15 147 19 20 191 6 8 14 3 5 92 0 8 8 0 10 11 0 2 72 chain 12693 chrX 155270560 + 128323168 128323393 LTR48B 642 - 46 278 149477 36 1 0 10 1 0 20 7 8 80 15 32 37 9 0 9 chain 399711 chrX 155270560 + 128338695 128344148 L1PB1 5432 - 5 5398 10104 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 6 4 10 1 0 4 3 1 19 16 6 6 3 0 16 4 3 40 1 0 18 1 0 4 12 9 39 2 0 9 16 11 9 1 0 24 3 0 8 0 7 255 33 32 98 3 0 23 0 1 204 10 11 117 6 0 169 0 11 74 0 1 4 6 1 360 36 13 367 6 20 269 0 1 60 8 9 62 0 1 4 6 5 31 5 8 32 6 5 9 1 0 148 5 7 5 1 0 190 2 0 394 21 26 19 1 2 38 2 0 612 22 0 6 1 0 165 0 2 29 4 5 31 0 4 312 0 1 301 9 1 510 chain 538024 chrX 155270560 + 128374838 128380972 L1PA4 6152 + 6 6152 3145 1074 0 3 626 0 1 107 0 1 1697 0 1 1149 1 0 685 1 0 629 14 17 145 0 5 6 chain 408896 chrX 155270560 + 128384227 128389649 L1PB1 5432 - 12 5413 9834 16 1 0 13 1 0 21 1 0 15 17 5 4 1 0 14 1 0 4 2 0 16 8 0 12 2 0 4 1 0 15 1 0 44 1 0 18 1 0 39 0 2 11 2 0 9 4 0 7 5 4 9 1 0 24 3 0 11 0 1 476 3 0 286 0 6 348 2 1 27 5 6 23 0 1 73 1 0 130 5 8 151 2 1 27 1 0 45 0 1 211 1 3 334 1 2 4 1 0 44 0 3 49 0 1 491 11 12 265 6 18 32 5 32 8 27 0 32 12 13 132 0 1 121 1 2 55 1 2 223 6 0 7 1 0 941 18 18 382 2 1 34 chain 5920 chrX 155270560 + 128401335 128401437 L1MA3 4352 - 24 122 185985 14 1 0 20 13 12 22 2 0 30 chain 29729 chrX 155270560 + 128403035 128403352 AluYb8 318 - 1 318 85728 317 chain 4078 chrX 155270560 + 128408076 128408198 L1MA8 2339 - 738 856 206211 24 62 58 36 chain 307081 chrX 155270560 + 128411665 128417016 L1PB1 5432 - 196 4631 13127 69 2 0 9 59 55 288 4 0 6 0 4 183 0 1 831 0 2 56 2 6 653 1 0 231 2 0 21 1214 331 146 43 0 22 6 8 93 1 0 159 0 12 22 3 30 13 27 0 365 0 1 201 17 11 5 2 0 7 1 0 163 6 8 219 0 3 179 0 2 20 chain 75344 chrX 155270560 + 128414092 128414931 L1PA4 6152 - 0 840 45848 333 1 2 505 chain 26114 chrX 155270560 + 128419529 128420200 L1PA8 5853 + 5505 5853 99559 59 1 0 45 2 0 68 3 2 12 1 0 49 2 1 19 318 2 7 1 0 84 chain 339655 chrX 155270560 + 128424171 128428067 L1PA5 6144 + 2241 6142 11909 689 1 2 226 1 0 48 7 5 773 0 3 1027 1 0 273 0 1 517 0 1 53 0 3 280 chain 80767 chrX 155270560 + 128428340 128429672 L1MA2 4263 + 1970 4113 43283 159 145 0 194 1 0 4 1 2 108 0 978 127 2 0 38 8 7 37 10 12 27 1 0 130 19 13 150 2 1 9 2 1 55 4 8 13 8 0 15 7 0 47 1 0 8 chain 20030 chrX 155270560 + 128447764 128448168 MSTB 430 - 20 430 127041 80 0 3 7 6 6 23 1 0 46 5 0 23 102 111 111 chain 9797 chrX 155270560 + 128455927 128456031 L1PA3long 6157 - 0 104 161613 104 chain 60570 chrX 155270560 + 128462066 128462744 L1PA5 6144 - 4 685 52531 239 0 3 439 chain 26594 chrX 155270560 + 128469402 128469767 THE1C-int 1605 + 0 429 97687 18 1 0 21 6 5 54 2 68 263 chain 15514 chrX 155270560 + 128469767 128469947 THE1B-int 1605 - 1406 1586 139586 180 chain 537071 chrX 155270560 + 128471032 128477031 L1PA3long 6157 + 12 6149 3304 58 0 1 82 0 1 622 0 128 1422 1 0 3031 0 3 777 0 6 6 chain 25167 chrX 155270560 + 128477094 128477422 L1M1 2793 + 1500 1826 103918 158 4 0 4 0 1 8 5 4 44 0 2 105 chain 503877 chrX 155270560 + 128486184 128491940 L1PA5 6144 + 383 6144 6612 650 0 1 1722 0 1 450 1 0 295 0 2 840 0 4 670 1 0 625 5 4 497 chain 34597 chrX 155270560 + 128503842 128504277 MLT2A1 477 + 0 477 76762 83 0 1 85 4 1 9 0 1 24 0 1 178 0 2 12 3 43 37 chain 63349 chrX 155270560 + 128508748 128509483 L1PA8A 6298 - 7 743 51296 107 0 1 628 chain 60140 chrX 155270560 + 128509490 128510204 L1PA8A 6298 + 4815 5534 52755 582 0 5 132 chain 43136 chrX 155270560 + 128522174 128522655 L1PA3long 6157 + 1369 1850 65248 481 chain 311729 chrX 155270560 + 128522655 128526100 L1PA3long 6157 + 1854 5356 12938 836 0 1 1691 0 56 918 chain 73608 chrX 155270560 + 128526100 128526898 L1PA3long 6157 + 5359 6157 46726 798 chain 65066 chrX 155270560 + 128534820 128535599 L1PA7 6471 - 21 802 50544 141 3 4 570 0 1 65 chain 28381 chrX 155270560 + 128539070 128539382 L1PA3long 6157 - 2957 3269 91300 312 chain 81780 chrX 155270560 + 128539382 128540307 L1PA3long 6157 + 3184 4114 42857 71 0 1 464 0 3 223 0 1 167 chain 186727 chrX 155270560 + 128540307 128542348 L1PA3long 6157 + 4115 6156 20358 2041 chain 306671 chrX 155270560 + 128553612 128557187 L1PA7 6471 - 5 3598 13145 157 0 1 176 0 1 381 0 6 44 0 2 77 2 0 15 0 4 971 2 0 629 2 0 449 0 4 46 0 1 24 1 0 374 0 2 212 0 4 13 chain 9672 chrX 155270560 + 128570507 128570624 5S 121 - 3 121 162233 14 0 1 103 chain 179167 chrX 155270560 + 128587331 128589591 L1PA7 6471 + 4372 6466 21059 27 6 0 123 0 2 144 0 4 920 0 4 25 3 0 31 163 0 49 1 0 407 2 1 22 0 1 182 1 0 145 2 0 7 chain 22994 chrX 155270560 + 128608714 128609077 THE1B 368 + 0 368 115648 165 17 16 20 20 25 40 7 8 32 1 0 4 1 2 56 chain 72781 chrX 155270560 + 128615521 128616326 L1PA2 6032 + 5231 6032 47131 198 0 1 589 2 0 7 3 0 6 chain 12827 chrX 155270560 + 128660617 128660820 MER30B 195 + 0 195 148948 94 16 6 10 10 12 73 chain 26812 chrX 155270560 + 128697725 128698015 L1PA3long 6157 + 5020 5310 96935 290 chain 76592 chrX 155270560 + 128698015 128698850 L1PA3long 6157 + 5314 6157 45167 824 0 8 11 chain 29044 chrX 155270560 + 128701879 128702192 AluYb8 318 - 8 318 88787 192 3 0 118 chain 27613 chrX 155270560 + 128707836 128708177 L1PA8 5853 - 321 661 94315 71 8 7 262 chain 3862 chrX 155270560 + 128754864 128754930 MER33 330 - 0 81 209418 17 1 0 4 5 21 39 chain 4747 chrX 155270560 + 128775596 128775747 MSTC 436 - 85 250 197949 21 55 70 12 20 19 43 chain 2779 chrX 155270560 + 128801876 128801910 L1MB3 1562 - 137 170 229024 4 1 0 29 chain 133885 chrX 155270560 + 128804731 128806229 L1PA5 6144 - 0 1497 27243 40 2 0 82 0 1 1374 chain 3348 chrX 155270560 + 128806844 128806883 MLT2B1 522 + 483 522 218090 39 chain 2734 chrX 155270560 + 128813245 128813275 MER5A1 166 - 96 126 229695 30 chain 5498 chrX 155270560 + 128830271 128830340 MLT1C 463 - 2 71 190054 69 chain 47573 chrX 155270560 + 128850294 128850969 MER51A 677 - 0 677 60788 64 1 0 6 0 1 179 18 29 165 3 7 27 36 23 176 chain 3794 chrX 155270560 + 128896278 128896320 5S 121 - 79 121 210465 42 chain 12123 chrX 155270560 + 128900685 128900907 THE1D 372 - 0 225 151720 32 1 0 56 1 0 60 53 58 19 chain 2948 chrX 155270560 + 128904207 128904242 MIRb 242 - 49 84 226091 35 chain 29594 chrX 155270560 + 128941140 128941451 AluYb8 318 + 0 311 86223 311 chain 4655 chrX 155270560 + 128945689 128945745 7SK 245 + 0 56 199009 56 chain 52841 chrX 155270560 + 128955925 128956591 L1PA8 5853 + 5190 5853 57110 374 1 0 45 2 0 66 9 8 10 1 0 5 3 7 35 2 1 19 2 1 92 chain 5801 chrX 155270560 + 128962245 128962316 MER51E 476 + 304 375 187142 71 chain 177310 chrX 155270560 + 128983726 128985945 SVA_D 2077 + 0 2061 21223 14 0 3 903 1 0 27 91 1 86 10 12 211 0 1 4 10 37 83 0 8 11 9 0 80 99 0 580 chain 6651 chrX 155270560 + 128984671 128984762 SVA_D 2077 + 985 1049 70892 5 1 0 40 1 0 6 35 10 3 chain 2993 chrX 155270560 + 128984724 128984759 SVA_D 2077 + 1264 1299 82131 35 chain 4981 chrX 155270560 + 128985272 128985365 SVA_D 2077 + 1036 1129 120818 93 chain 503154 chrX 155270560 + 128987639 128993336 L1PA5 6144 - 12 5718 6662 321 0 1 210 0 1 305 2 0 247 0 1 702 0 4 253 0 2 800 0 1 126 1 0 842 4 3 782 11 13 505 0 1 586 chain 9357 chrX 155270560 + 128997307 128997412 AluSp 311 + 37 142 163767 105 chain 2865 chrX 155270560 + 129000366 129000396 L1PA8A 6298 - 7 37 227598 30 chain 19096 chrX 155270560 + 129000396 129000619 L1PA8A 6298 + 5919 6142 129826 223 chain 70995 chrX 155270560 + 129006846 129008371 MER41-int 2638 + 1663 2622 47931 5 1 0 14 1 0 39 0 3 76 0 10 56 316 9 58 275 0 102 0 2 58 2 0 7 2 0 319 0 6 127 1 2 66 chain 14657 chrX 155270560 + 129011630 129011825 MER30 238 + 26 237 142405 81 4 0 10 1 21 99 chain 6510 chrX 155270560 + 129018107 129018254 L1MB3 1562 - 55 175 181161 36 1 2 31 38 11 6 1 0 34 chain 27477 chrX 155270560 + 129022338 129022726 THE1D 372 + 0 372 94729 75 19 0 84 0 3 25 7 6 63 0 2 76 1 0 38 chain 3349 chrX 155270560 + 129026298 129026341 L1MEf 1413 + 947 990 218064 43 chain 23236 chrX 155270560 + 129034828 129035114 AluSz6 309 - 17 309 114516 32 0 1 67 0 3 38 0 2 149 chain 3451 chrX 155270560 + 129035297 129035339 MamRep1879 211 + 82 124 216199 42 chain 5777 chrX 155270560 + 129036190 129036272 MER2 342 - 127 210 187372 63 1 4 11 2 0 5 chain 21600 chrX 155270560 + 129103652 129105501 L1PB1 5432 - 10 523 121770 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 378 1 18 38 27 45 0 1 14 2 1 52 2 0 9 22 17 4 1 0 23 13 0 12 1033 112 82 chain 25686 chrX 155270560 + 129142240 129142538 AluSp 311 - 13 311 101350 298 chain 8519 chrX 155270560 + 129197987 129198095 L1PA8 5853 - 4 106 168196 89 1 0 6 5 0 7 chain 29088 chrX 155270560 + 129284301 129284609 AluYa5 310 - 2 310 88602 308 chain 13201 chrX 155270560 + 129292587 129292762 MER30 238 - 12 183 147460 27 3 0 89 4 3 52 chain 10455 chrX 155270560 + 129334366 129334565 L1MB5 1630 - 417 632 158469 35 52 69 26 1 0 85 chain 24225 chrX 155270560 + 129337359 129337656 AluY 311 + 11 302 109058 120 6 0 171 chain 24748 chrX 155270560 + 129362249 129362556 AluSp 311 - 4 311 106184 307 chain 15378 chrX 155270560 + 129375463 129375723 AluJr 308 + 11 271 140267 36 6 7 53 1 0 11 1 12 9 3 0 4 9 0 34 11 12 82 chain 54164 chrX 155270560 + 129386706 129387474 L1PA13 3608 + 2687 3448 56251 349 0 1 84 8 7 31 1 0 96 20 18 9 0 1 51 1 0 57 8 6 46 2 0 5 chain 29145 chrX 155270560 + 129389105 129389413 AluYa5 310 - 2 310 88340 308 chain 25971 chrX 155270560 + 129403958 129404252 AluSp 311 - 17 311 100132 294 chain 1622 chrX 155270560 + 129411158 129411338 MER51A 677 + 2 323 85150 136 0 6 32 0 135 12 chain 125852 chrX 155270560 + 129411709 129413394 HERVH-int 3825 + 0 1956 29141 322 23 22 66 27 146 7 0 1 6 1 0 10 1 0 18 0 150 30 1 0 448 15 0 62 1 2 140 9 0 22 0 2 189 1 0 42 3 30 241 chain 2712 chrX 155270560 + 129414174 129414475 MER51A 677 + 333 661 85150 60 1 31 11 0 1 6 6 12 58 2 1 76 8 0 66 1 0 6 chain 24116 chrX 155270560 + 129417665 129417948 AluSp 311 + 10 293 109654 283 chain 32655 chrX 155270560 + 129421347 129421832 MER51A 677 + 0 661 79755 8 0 3 165 3 0 24 12 1 27 4 197 18 0 2 67 2 1 20 0 1 53 10 2 72 chain 5389 chrX 155270560 + 129426459 129426527 MER11A 1151 - 931 997 191095 21 2 0 45 chain 7058 chrX 155270560 + 129436292 129436378 L1MB7 1623 - 436 522 177047 86 chain 17319 chrX 155270560 + 129436390 129436615 L1PA8 5853 + 5632 5853 134737 50 1 0 5 2 1 52 2 1 19 1 0 93 chain 19622 chrX 155270560 + 129438107 129438395 L1MA2 4263 - 150 428 128328 8 1 0 27 1 0 8 0 1 11 7 0 93 2 1 6 1 0 44 0 1 55 1 0 23 chain 12579 chrX 155270560 + 129440167 129440308 L1PA6 6164 + 6021 6162 149921 141 chain 6686 chrX 155270560 + 129444072 129444152 U6 107 - 27 107 179781 80 chain 68594 chrX 155270560 + 129453057 129453865 THE1B-int 1605 + 798 1605 48991 780 2 0 9 0 1 17 chain 24705 chrX 155270560 + 129453865 129454209 THE1B 368 + 0 368 106405 42 1 16 103 0 2 6 3 0 63 1 0 10 0 4 60 5 13 12 1 0 37 chain 25934 chrX 155270560 + 129458082 129458448 THE1C 375 - 13 375 100282 12 1 0 188 28 8 10 0 17 127 chain 79307 chrX 155270560 + 129486069 129487167 L1PA16 3655 - 79 1182 43907 20 0 2 264 2 0 81 3 1 4 1 0 120 0 2 51 0 1 31 14 16 61 1 0 18 1 0 15 6 10 104 13 14 87 1 0 188 0 1 12 chain 5109 chrX 155270560 + 129496266 129496330 MER41A 554 - 88 157 193987 22 0 4 12 0 1 30 chain 91735 chrX 155270560 + 129521803 129522868 L1PA7 6471 + 5396 6464 39056 77 0 5 136 0 3 645 3 0 36 1 0 13 1 0 153 chain 16036 chrX 155270560 + 129525290 129525610 Tigger3a 397 - 25 352 138264 53 1 3 85 6 8 22 6 10 12 50 0 40 15 64 30 chain 29182 chrX 155270560 + 129539817 129540128 AluYa5 310 - 0 310 88136 184 1 0 126 chain 29947 chrX 155270560 + 129554578 129555080 L1PB1 5432 - 5 462 84976 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 14 7 6 11 11 0 15 1 0 45 1 0 15 2 1 52 2 0 8 8 4 10 1 0 8 1 0 24 1 0 13 11 0 131 chain 25222 chrX 155270560 + 129563255 129563586 LTR12 884 - 395 884 103627 25 0 1 30 0 2 54 2 0 82 0 25 64 0 132 74 chain 7568 chrX 155270560 + 129570140 129570323 L1MA3 4352 - 0 162 173741 16 13 9 13 1 0 12 7 0 10 12 10 24 2 0 7 3 2 14 4 0 45 chain 30772 chrX 155270560 + 129571659 129572188 L1PA15 4387 - 37 543 82916 17 26 19 32 19 15 50 15 10 22 2 1 54 1 0 25 3 2 170 1 0 41 6 4 31 1 0 13 chain 9034 chrX 155270560 + 129575193 129575297 LTR71B 605 + 501 605 165421 104 chain 551433 chrX 155270560 + 129581500 129587627 L1PA4 6152 - 16 6150 1262 828 0 4 1225 0 1 3033 0 2 1041 chain 115762 chrX 155270560 + 129611376 129612651 L1PA3long 6157 + 4877 6152 32540 1275 chain 30840 chrX 155270560 + 129612662 129613049 L1PA7 6471 + 6086 6467 82784 153 3 2 65 0 1 8 2 0 146 4 0 6 chain 6360 chrX 155270560 + 129627537 129627646 MER5A1 166 - 1 113 182316 16 19 22 74 chain 73474 chrX 155270560 + 129646387 129647393 MER11A 1151 - 0 1151 46801 167 0 1 12 1 0 31 15 24 33 17 48 13 7 0 132 5 6 145 0 1 94 0 1 54 1 13 49 0 2 31 4 0 53 0 1 10 1 0 60 0 99 71 chain 566042 chrX 155270560 + 129651351 129657381 L1HS 6032 + 2 6032 150 6030 chain 4548 chrX 155270560 + 129657590 129657649 MADE1 96 - 5 96 200237 18 0 31 15 0 1 26 chain 8728 chrX 155270560 + 129666902 129667013 MLT1C 463 - 2 114 167042 46 0 1 65 chain 17781 chrX 155270560 + 129667410 129667772 MER83 447 + 83 447 133475 107 14 8 87 3 4 21 93 100 37 chain 15630 chrX 155270560 + 129669320 129669662 MER83A-int 427 + 100 420 139495 26 57 46 27 3 0 43 0 1 32 18 17 50 7 4 8 1 0 15 4 0 51 chain 505621 chrX 155270560 + 129702054 129707635 L1PA3long 6157 - 410 6122 6486 2558 1 0 1076 1 4 1205 0 128 623 0 1 117 chain 19166 chrX 155270560 + 129725614 129725886 L1PA8 5853 - 0 269 129628 92 2 1 19 2 1 45 1 3 13 2 1 70 2 0 24 chain 17968 chrX 155270560 + 129752519 129752800 MER47A 366 + 111 366 132943 21 32 0 58 3 5 20 0 4 147 chain 21812 chrX 155270560 + 129782159 129782427 AluSp 311 + 11 297 120969 37 0 17 44 1 2 186 chain 7290 chrX 155270560 + 129782630 129782741 MSTB1 431 + 71 197 175509 65 4 0 6 5 8 17 0 16 14 chain 66546 chrX 155270560 + 129808591 129809323 L1PA3long 6157 - 0 730 49847 13 3 0 573 0 1 143 chain 4550 chrX 155270560 + 129812076 129812127 MSTC 436 + 385 436 200209 51 chain 22762 chrX 155270560 + 129816312 129816586 AluY 311 + 36 311 116767 96 0 1 178 chain 21993 chrX 155270560 + 129843745 129844000 L1PA7 6471 - 2 260 120260 11 0 2 27 0 1 217 chain 2868 chrX 155270560 + 129865410 129865443 L1MD 993 + 741 774 227548 33 chain 3099 chrX 155270560 + 129874798 129874835 MIRb 242 + 8 45 222924 37 chain 70278 chrX 155270560 + 129920381 129921152 L1PA3long 6157 - 2 773 48279 771 chain 43096 chrX 155270560 + 129932961 129933511 MLT2A2 560 + 0 560 65295 379 1 0 24 1 12 145 chain 532396 chrX 155270560 + 129947427 129953847 L1PA7 6471 + 0 6470 3923 247 0 2 151 0 3 125 0 4 563 0 4 6 5 1 319 0 1 135 1 0 183 0 1 65 1 0 292 0 2 34 1 0 4 0 1 377 0 2 112 21 0 462 0 4 228 0 1 155 3 2 13 4 0 111 1 2 598 0 2 458 0 8 77 0 10 213 0 1 406 0 26 205 2 0 381 0 1 320 10 22 126 1 0 4 chain 47508 chrX 155270560 + 129955159 129955676 L1PA2 6032 + 5513 6030 60838 517 chain 29022 chrX 155270560 + 129956444 129956762 L1PA4 6152 + 5834 6152 88893 318 chain 3135 chrX 155270560 + 129974301 129974336 Charlie20a 515 - 95 130 222279 35 chain 127042 chrX 155270560 + 130006559 130008016 L1PA7 6471 + 4999 6458 28804 615 0 2 842 chain 5941 chrX 155270560 + 130028256 130028326 L1PA8 5853 + 5782 5853 185773 47 0 1 23 chain 123268 chrX 155270560 + 130052864 130054423 THE1B-int 1605 - 0 1605 29953 153 0 1 610 0 1 17 5 6 103 7 8 36 8 9 75 2 14 40 0 3 72 0 25 424 0 1 7 chain 25146 chrX 155270560 + 130054423 130054780 THE1B 368 - 0 368 104024 75 1 0 101 14 12 8 1 0 108 5 20 44 chain 14617 chrX 155270560 + 130058224 130058378 L1PA2 6032 + 5873 6027 142528 154 chain 44116 chrX 155270560 + 130061208 130062048 L1MA5A 2387 - 15 766 64064 13 2 0 19 1 0 4 5 4 15 59 21 48 1 0 4 0 1 5 9 0 8 19 0 11 3 0 32 2 0 29 19 17 33 1 0 30 11 15 11 20 13 6 5 0 100 10 9 190 1 0 98 1 0 15 chain 20100 chrX 155270560 + 130074992 130075214 L1PA7 6471 + 6243 6465 126827 222 chain 69298 chrX 155270560 + 130082862 130083596 L1HS 6032 - 0 734 48683 734 chain 559086 chrX 155270560 + 130092905 130098931 L1PA2 6032 + 0 6031 415 573 0 4 1984 0 1 3469 chain 10164 chrX 155270560 + 130113133 130113402 L1PB3 3668 - 54 293 159777 15 7 4 12 24 19 35 3 1 21 17 14 11 20 4 70 18 17 16 chain 8601 chrX 155270560 + 130122623 130122772 L1PA16 3655 + 3491 3618 167727 86 2 0 12 29 9 20 chain 9643 chrX 155270560 + 130124284 130124500 L1MA7 2200 + 1849 2046 162385 63 13 14 23 2 0 28 56 38 31 chain 7647 chrX 155270560 + 130127249 130127335 L1PA6 6164 + 6073 6159 173243 86 chain 213399 chrX 155270560 + 130137017 130139289 L1HS 6032 - 1200 3472 18261 2272 chain 111926 chrX 155270560 + 130139289 130140494 L1HS 6032 + 4827 6032 33636 1205 chain 14830 chrX 155270560 + 130172171 130172329 L1PA2 6032 + 5866 6024 141841 158 chain 29026 chrX 155270560 + 130251593 130251896 AluYa5 310 - 7 310 88870 303 chain 540719 chrX 155270560 + 130257199 130263215 L1PA3long 6157 - 8 6157 2706 645 0 1 1000 0 4 3447 6 2 146 0 128 483 6 9 120 11 12 152 chain 18750 chrX 155270560 + 130267825 130268035 L1PA5 6144 - 6 216 130823 210 chain 30209 chrX 155270560 + 130275625 130276000 L1PB1 5432 - 1826 2201 84166 375 chain 121720 chrX 155270560 + 130276002 130278307 L1PB1 5432 + 3609 5430 30473 15 1 2 101 2 5 229 0 1 150 1 2 514 10 7 21 1 5 37 0 1 4 8 5 83 9 7 185 0 1 77 176 48 6 3 0 20 1 0 8 2 1 12 2 0 3 2 0 9 3 1 51 2 1 15 1 0 42 370 32 16 3 1 5 1 0 14 3 1 45 1 0 10 1 0 13 2 1 10 1 0 4 chain 26452 chrX 155270560 + 130285659 130285954 L1PA3long 6157 + 5861 6157 98228 288 0 1 7 chain 549029 chrX 155270560 + 130286246 130292269 L1PA2 6032 - 1 6032 1572 16 0 1 1518 0 4 304 0 1 582 0 1 1524 0 2 766 1 0 1312 chain 340095 chrX 155270560 + 130294711 130298858 L1P3 4156 - 17 4156 11895 20 15 12 24 1 2 187 3 12 115 5 0 272 0 1 144 0 1 201 1 0 518 0 1 178 6 0 233 0 5 311 0 1 273 1 2 233 0 3 941 5 7 34 16 0 88 1 0 69 1 0 251 chain 71511 chrX 155270560 + 130325607 130326383 L1PA3long 6157 - 1 777 47692 776 chain 4952 chrX 155270560 + 130336883 130336944 MIR 256 - 128 189 195676 61 chain 20543 chrX 155270560 + 130345565 130345802 L1PA4 6152 - 642 883 125493 7 0 5 197 1 0 32 chain 56050 chrX 155270560 + 130345802 130346434 L1PA4 6152 + 5498 6139 55090 493 4 13 135 chain 18266 chrX 155270560 + 130375067 130375330 L1PA8 5853 + 5587 5845 132164 23 2 0 68 2 1 11 1 0 4 0 1 45 2 1 19 1 0 85 chain 552006 chrX 155270560 + 130379518 130385548 L1PA2 6032 - 3 6029 1191 1492 1 0 302 1 6 341 4 0 653 16 10 1113 0 1 1142 0 1 965 chain 2666 chrX 155270560 + 130441290 130441546 L1MCa 1829 - 569 804 230811 19 110 91 15 85 83 27 chain 21348 chrX 155270560 + 130443695 130443937 L1PA4 6152 + 5910 6152 122697 242 chain 80193 chrX 155270560 + 130461273 130462199 SVA_D 2077 + 737 2072 43510 31 2 82 17 0 82 44 1 0 22 1 60 155 0 176 35 1 4 284 0 10 333 chain 21043 chrX 155270560 + 130477471 130477707 L1PA5 6144 - 3 240 123757 165 0 1 71 chain 3440 chrX 155270560 + 130511387 130511426 U2 167 - 128 167 216367 39 chain 544844 chrX 155270560 + 130512312 130518341 L1PA3long 6157 - 1 6157 2093 2925 0 1 2178 6 2 141 0 128 525 0 1 101 0 1 153 chain 14106 chrX 155270560 + 130545246 130545468 MER41B 635 + 325 549 144196 40 15 18 83 9 8 75 chain 536351 chrX 155270560 + 130561963 130568388 L1PA7 6471 + 15 6470 3401 22 0 7 366 0 2 1149 1 0 239 0 2 352 9 10 236 1 18 102 0 2 119 5 1 855 1 0 24 0 1 5 1 0 73 4 6 7 2 0 7 1 2 1184 0 4 193 10 1 55 0 3 224 0 1 336 4 9 61 1 0 5 0 2 380 0 1 379 2 0 10 chain 29902 chrX 155270560 + 130570669 130571002 L1PA4 6152 - 1 334 85087 333 chain 180487 chrX 155270560 + 130583245 130585321 L1PA4 6152 + 3993 6152 20944 31 0 48 94 1 2 723 0 1 1053 0 25 68 0 1 100 0 7 6 chain 14192 chrX 155270560 + 130590116 130590306 L1PA7 6471 - 5 195 143906 59 1 0 83 4 5 43 chain 474015 chrX 155270560 + 130595576 130601193 L1PA5 6144 + 0 6135 7913 273 0 1 427 0 1 426 0 1 1308 0 83 565 0 1 84 1 0 90 0 2 16 3 1 403 0 1 250 0 1 371 0 436 286 85 0 754 0 1 97 1 0 113 11 90 53 chain 43994 chrX 155270560 + 130604967 130605447 L1PA4 6152 - 12 492 64213 480 chain 142748 chrX 155270560 + 130606230 130607943 L1P1 4361 - 20 1736 25691 12 2 1 23 6 5 49 1 2 4 1 0 97 1 0 867 0 1 58 0 4 58 0 1 534 chain 21571 chrX 155270560 + 130617148 130617703 THE1B 368 + 0 368 121878 44 0 15 96 227 20 23 40 45 125 chain 296041 chrX 155270560 + 130617733 130624176 L1PB1 5432 + 1404 5422 13643 42 9 10 119 0 2 33 0 1 154 7 1 201 3 0 415 0 1 107 1 3 93 10 13 243 1 0 38 0 1 124 4 3 542 8 1 121 1 2 59 0 4 136 2343 0 89 6 5 14 0 5 6 3 0 250 0 3 281 1 10 69 1 5 16 2 0 216 0 1 4 1 0 51 4 6 194 82 16 24 1 0 4 53 46 32 2 1 15 1 0 45 1 0 15 24 12 19 24 19 24 1 0 21 1 0 13 1 0 18 chain 54660 chrX 155270560 + 130620216 130620811 L1PA3long 6157 - 1718 2313 55751 595 chain 153812 chrX 155270560 + 130620811 130622513 L1PA3long 6157 + 4456 6157 24112 758 2 1 942 chain 142731 chrX 155270560 + 130630142 130631709 L1PA4 6152 - 0 1567 25695 1567 chain 3574 chrX 155270560 + 130632834 130632878 MADE1 96 - 50 96 214072 20 0 2 24 chain 182659 chrX 155270560 + 130637331 130639303 L1PA2 6032 + 4060 6032 20721 1972 chain 32757 chrX 155270560 + 130640852 130641247 L1PA8A 6298 + 5896 6290 79602 283 6 5 106 chain 49794 chrX 155270560 + 130646435 130646984 L1PA4 6152 + 5585 6134 59162 549 chain 24573 chrX 155270560 + 130653836 130654179 THE1A 353 + 0 341 107119 71 1 2 37 1 0 65 7 6 21 1 0 139 chain 126549 chrX 155270560 + 130654191 130655766 THE1A-int 1579 + 0 1579 28929 311 5 6 90 6 5 86 1 0 132 7 8 357 1 0 284 0 3 6 3 0 150 0 5 136 chain 536337 chrX 155270560 + 130658464 130664593 L1PA5 6144 + 3 6134 3404 1216 0 1 6 1 0 208 0 2 4698 chain 41880 chrX 155270560 + 130667759 130668437 L1MA2 4263 + 3419 4105 66788 96 11 12 39 1 0 18 10 6 72 1 0 52 0 3 29 0 2 44 17 14 56 1 0 96 25 20 57 19 36 34 chain 42108 chrX 155270560 + 130681034 130681508 L1PA3long 6157 - 0 479 66492 5 0 2 280 0 3 189 chain 19979 chrX 155270560 + 130686329 130686607 L1PA8 5853 - 11 283 127211 81 2 1 19 2 1 47 1 0 14 10 9 62 2 0 38 chain 493546 chrX 155270560 + 130686665 130692164 L1PA3long 6157 + 4 6157 7199 778 0 2 266 6 2 1099 0 1 67 1 2 1106 0 1 896 0 649 437 0 4 843 chain 13561 chrX 155270560 + 130695493 130695752 L1PA8 5853 + 5591 5853 146128 17 2 0 70 2 1 9 1 2 10 4 2 34 6 5 12 33 41 59 chain 5828 chrX 155270560 + 130697612 130697679 L1PA7 6471 - 6 73 186875 67 chain 4030 chrX 155270560 + 130712405 130712456 Tigger3c 601 + 485 538 206940 37 0 2 14 chain 545615 chrX 155270560 + 130712654 130718709 L1PA2 6032 + 3 6030 1997 1600 40 0 122 0 5 938 0 2 1262 2 0 364 0 17 673 7 0 190 0 4 76 1 0 610 5 0 8 1 0 156 chain 14292 chrX 155270560 + 130739201 130739432 L1PA8 5853 - 0 219 143581 62 18 10 21 1 0 16 1 0 49 8 7 9 1 0 45 chain 29117 chrX 155270560 + 130760260 130760564 AluYa5 310 - 6 310 88467 304 chain 100092 chrX 155270560 + 130770898 130772383 L1PA7 6471 - 2 1304 36750 9 2 0 11 2 0 128 0 1 405 284 106 188 2 0 454 chain 6000 chrX 155270560 + 130786135 130786216 L1MA2 4263 - 158 232 185239 47 7 0 27 chain 555300 chrX 155270560 + 130797965 130803997 L1PA2 6032 + 0 6029 793 3049 1 0 881 2 0 2099 chain 17139 chrX 155270560 + 130805433 130805652 L1PA8 5853 + 5637 5852 135207 45 1 0 7 1 0 51 2 1 19 2 1 91 chain 55599 chrX 155270560 + 130830889 130831575 L1PA7 6471 - 1 684 55360 158 3 4 296 6 0 117 0 2 106 chain 32948 chrX 155270560 + 130846052 130846474 LTR7 482 + 0 482 79295 69 8 46 131 0 21 22 0 1 192 chain 292174 chrX 155270560 + 130846476 130850134 HERVH-int 3825 + 0 3825 13887 333 1 0 200 1 0 37 2 1 9 1 0 10 4 0 13 7 1 14 1 0 13 26 21 4 1 0 27 2 0 13 2 1 23 21 0 59 0 1 4 2 0 647 9 0 27 0 2 10 1 0 309 0 1 312 0 5 973 9 11 39 8 218 199 3 4 54 3 5 225 chain 31415 chrX 155270560 + 130851382 130851792 LTR7 482 + 0 482 81786 69 8 46 143 0 32 94 1 3 95 chain 23622 chrX 155270560 + 130855408 130855697 AluSg7 307 - 12 298 112459 8 2 0 101 1 0 177 chain 25110 chrX 155270560 + 130860900 130861195 AluY 311 + 10 306 104226 122 0 1 173 chain 23766 chrX 155270560 + 130873927 130874293 LTR4 552 - 22 399 111672 32 1 2 86 25 34 12 0 3 65 8 7 99 1 0 9 1 0 7 0 1 20 chain 24134 chrX 155270560 + 130882815 130883117 AluY 311 + 1 297 109557 132 14 6 74 0 2 82 chain 30192 chrX 155270560 + 130898797 130899264 MER11C 1089 + 631 1073 84221 33 37 0 26 7 9 38 0 1 32 5 13 82 0 1 54 10 9 135 0 1 8 chain 25461 chrX 155270560 + 130900256 130900555 AluY 311 + 2 302 102401 130 0 1 169 chain 24220 chrX 155270560 + 130915177 130915460 AluSp 311 - 17 300 109090 283 chain 24631 chrX 155270560 + 130946124 130946422 AluSp 311 + 0 294 106821 125 0 3 3 7 0 163 chain 12876 chrX 155270560 + 130962361 130962500 L1PA3long 6157 + 6018 6157 148725 139 chain 34570 chrX 155270560 + 130965889 130966547 MER4A 717 - 8 717 76793 36 0 1 10 128 186 53 12 28 54 1 0 2 10 0 7 1 2 94 3 4 109 15 0 123 chain 29507 chrX 155270560 + 130984970 130985313 MER48 407 - 61 404 86610 343 chain 7105 chrX 155270560 + 131007921 131008000 L1PA16 3655 - 269 348 176726 79 chain 86102 chrX 155270560 + 131009425 131010379 L1PA5 6144 + 5176 6131 41118 147 0 1 807 chain 29247 chrX 155270560 + 131017041 131017353 AluYa5 310 + 0 310 87808 132 2 0 178 chain 150137 chrX 155270560 + 131046818 131048524 L1PA5 6144 - 16 1718 24595 751 1 0 755 3 0 196 chain 24874 chrX 155270560 + 131051088 131051387 AluY 311 + 10 311 105489 122 0 1 44 0 1 133 chain 49186 chrX 155270560 + 131056252 131057058 L1MA3 4352 + 3404 4186 59605 9 1 0 29 1 4 104 3 2 64 4 0 277 6 8 147 111 89 43 1 0 6 chain 298552 chrX 155270560 + 131057096 131061157 L1PBa1 4058 + 11 4045 13502 24 2 1 9 6 4 6 1 0 175 1 2 204 0 4 89 2 15 22 1 0 52 15 14 26 4 1 276 0 15 102 0 4 183 1 0 26 0 1 217 0 1 89 3 20 68 2 1 638 0 1 148 38 23 199 1 0 71 0 5 13 24 0 7 2 0 82 2 1 585 1 0 112 2 0 113 15 13 28 1 0 41 2 0 108 3 1 22 1 0 7 6 0 15 2 0 16 17 12 18 1 0 12 12 9 5 1 0 5 1 0 9 1 0 17 1 0 40 3 0 7 chain 10216 chrX 155270560 + 131063017 131063264 L1PB1 5432 - 15 239 159533 4 1 0 9 1 0 13 1 0 21 1 0 17 9 7 14 8 5 19 28 17 10 1 0 44 19 17 27 chain 202492 chrX 155270560 + 131064695 131067072 HERV17-int 4347 - 0 2374 19024 569 1 0 260 0 3 329 0 1 18 9 0 527 0 1 614 0 2 50 chain 4298 chrX 155270560 + 131072902 131072948 5S 121 - 29 75 203242 46 chain 31122 chrX 155270560 + 131083868 131084254 MLT2A1 477 + 0 383 82300 168 5 2 213 chain 77410 chrX 155270560 + 131084361 131085606 HERVL-int 5654 + 0 987 44774 56 6 7 134 280 22 35 7 6 727 chain 10520 chrX 155270560 + 131086241 131086366 L1PB 1623 + 530 655 158161 125 chain 159819 chrX 155270560 + 131086534 131088729 L1PB1 5432 - 317 2478 23366 12 3 0 235 13 11 33 25 5 5 0 2 78 7 12 90 4 0 22 20 24 72 20 0 5 1 2 6 1 0 678 0 2 84 46 20 160 9 10 86 0 4 126 0 22 45 0 1 309 chain 172052 chrX 155270560 + 131095458 131097438 L1HS 6032 - 3205 5180 21808 248 4 0 1006 0 1 254 1 0 197 1 0 269 chain 287262 chrX 155270560 + 131097441 131100637 L1PA3long 6157 + 2960 6157 14204 213 1 0 10 0 1 2055 0 1 917 chain 36779 chrX 155270560 + 131108738 131109434 L1PB1 5432 - 5 699 73831 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 12 4 7 2 0 4 1 0 15 1 0 45 1 0 15 2 1 40 30 24 12 2 1 5 1 0 20 46 73 87 0 1 27 2 0 102 7 11 84 chain 523489 chrX 155270560 + 131123519 131129677 L1PA6 6164 + 0 6162 4811 144 6 7 220 1 9 30 13 13 532 2 1 231 7 0 1169 0 2 17 0 1 331 0 1 477 2 0 4 0 1 508 4 0 382 0 1 4 6 5 755 0 2 446 0 4 859 2 0 6 chain 8316 chrX 155270560 + 131140104 131140204 MER5A 189 + 26 126 169299 100 chain 76198 chrX 155270560 + 131143894 131144772 L1PA5 6144 + 5266 6144 45360 215 2 1 369 0 1 292 chain 52767 chrX 155270560 + 131145232 131145799 L1PA2 6032 + 5461 6028 57153 567 chain 5522 chrX 155270560 + 131168070 131168136 L1PA2 6032 + 5957 6022 189816 55 1 0 10 chain 33475 chrX 155270560 + 131185628 131186042 L1PA7 6471 - 2 418 78450 102 0 3 5 3 0 30 0 1 7 0 1 267 chain 44427 chrX 155270560 + 131239433 131240130 L1PA14 3548 + 2821 3484 63664 99 25 22 11 2 0 47 2 0 5 2 0 105 27 21 6 1 0 84 1 0 110 1 0 12 5 1 35 4 2 12 1 0 5 1 0 16 1 0 41 6 0 10 1 0 19 chain 533075 chrX 155270560 + 131266838 131272784 L1PA3long 6157 + 46 6156 3836 105 3 4 544 1 8 61 8 136 639 0 11 431 5 22 1184 1 0 322 0 1 2642 chain 18747 chrX 155270560 + 131282763 131282967 L1PA2 6032 + 5824 6028 130831 204 chain 5290 chrX 155270560 + 131286178 131286252 MLT1D-int 1367 + 19 90 192124 5 3 0 66 chain 549927 chrX 155270560 + 131290173 131296186 L1PA2 6032 - 0 6029 1456 462 0 2 3592 0 1 38 0 14 1667 1 0 253 chain 120139 chrX 155270560 + 131296603 131298192 THE1B-int 1605 + 0 1600 31013 284 4 5 12 1 0 131 40 50 107 1 0 158 0 1 686 9 10 156 chain 22881 chrX 155270560 + 131298197 131298569 THE1B 368 + 0 368 116183 15 18 16 16 0 1 63 0 3 6 2 0 41 39 32 54 0 4 42 1 0 75 chain 26316 chrX 155270560 + 131316738 131317111 THE1C 375 - 0 373 98762 18 8 7 152 11 5 11 0 3 26 6 10 141 chain 10016 chrX 155270560 + 131326048 131326191 L1PA16 3655 - 132 283 160506 95 8 11 27 0 5 13 chain 4423 chrX 155270560 + 131328847 131328954 LTR12C 1709 + 654 712 201664 49 49 0 9 chain 39277 chrX 155270560 + 131331039 131331464 L1PA2 6032 + 5608 6032 70357 88 1 0 336 chain 13168 chrX 155270560 + 131364404 131364646 L1MB8 1703 - 77 268 147585 23 66 15 153 chain 26104 chrX 155270560 + 131370543 131370871 AluY 311 + 0 311 99601 123 0 3 7 21 1 177 chain 544177 chrX 155270560 + 131378066 131384199 L1PA4 6152 - 1 6149 2192 147 0 1 708 0 1 8 0 4 2772 0 4 74 0 3 61 0 1 2216 14 14 72 0 1 61 chain 16850 chrX 155270560 + 131387136 131387415 L1PA16 3655 + 3366 3619 135980 44 1 2 166 52 25 16 chain 10106 chrX 155270560 + 131399985 131400141 MER1B 344 + 201 344 160064 15 4 0 61 1 0 4 13 5 58 chain 7793 chrX 155270560 + 131405829 131406091 MLT2C2 476 - 10 260 172344 39 154 142 69 chain 179018 chrX 155270560 + 131409124 131411681 L1MA1 4479 - 339 2895 21073 33 2 0 29 1 0 79 43 47 5 1 0 14 1 0 74 1 0 16 2 0 17 1 0 71 1 0 16 2 0 24 1 0 43 0 12 137 6 4 66 0 6 58 3 1 125 21 12 68 32 31 165 3 4 25 1 0 86 1 0 67 1 0 34 2 0 96 9 8 67 1 0 17 0 4 318 1 0 89 1 0 88 0 2 159 8 12 160 0 1 4 4 6 61 0 2 23 2 0 48 8 7 15 chain 531660 chrX 155270560 + 131418504 131424645 L1PA5 6144 - 6 6141 4002 129 28 28 673 2 1 12 2 1 2144 1 0 1297 0 1 1333 4 0 516 chain 344651 chrX 155270560 + 131439820 131452167 L1PA4 6152 - 9 4269 11768 146 0 1 1153 10 9 190 0 5 288 0 1 440 8289 192 332 5 6 336 2 4 577 0 1 579 chain 216227 chrX 155270560 + 131452167 131454599 L1PA4 6152 + 3713 6152 18097 2104 0 1 37 0 1 285 0 5 6 chain 13168 chrX 155270560 + 131457595 131457764 Tigger3c 601 - 87 266 147590 153 0 10 16 chain 315995 chrX 155270560 + 131457774 131461519 L1PA7 6471 + 2700 6459 12760 189 0 4 1097 0 1 487 5 15 1128 1 0 838 chain 74034 chrX 155270560 + 131472565 131473391 L1PA5 6144 - 3 832 46493 139 0 1 11 0 1 183 0 1 493 chain 11652 chrX 155270560 + 131475097 131475278 L1PB4 2604 + 2386 2572 153688 19 1 2 78 1 7 59 2 1 16 1 0 4 chain 4912 chrX 155270560 + 131496929 131497023 L1MB3 1562 - 10 105 196143 24 7 6 13 3 6 35 1 0 11 chain 10583 chrX 155270560 + 131527047 131527229 L1MA3 4352 - 26 199 157900 9 1 0 29 8 6 24 2 0 23 9 5 77 chain 12073 chrX 155270560 + 131534129 131534260 L1PA3long 6157 + 6026 6157 151888 131 chain 4190 chrX 155270560 + 131547332 131547409 MER53 195 - 15 87 204692 5 2 0 36 9 6 25 chain 62707 chrX 155270560 + 131554022 131554775 LTR17 781 - 8 781 51586 24 1 23 199 0 1 199 1 0 158 2 0 169 chain 4304 chrX 155270560 + 131572117 131572202 Tigger4 2445 + 2317 2396 203175 43 6 2 10 3 2 5 1 0 17 chain 453752 chrX 155270560 + 131579837 131585531 L1PA8 5853 - 0 5803 8627 93 1 0 7 0 17 46 1 0 10 2 1 64 9 7 46 1 0 362 6 47 130 0 1 13 5 4 174 1 0 99 10 16 196 5 0 459 0 2 149 0 2 469 6 115 75 1 0 314 1 5 20 1 2 26 1 0 393 0 4 459 15 0 328 1 0 175 14 5 346 1 0 863 6 10 185 67 28 4 0 1 4 1 0 5 2 0 22 chain 69937 chrX 155270560 + 131634531 131635288 L1PA3long 6157 - 0 757 48416 757 chain 4203 chrX 155270560 + 131675989 131676037 L1MA3 4352 - 1052 1100 204497 48 chain 16912 chrX 155270560 + 131676828 131677030 L1PA7 6471 - 1 203 135819 4 1 0 48 1 2 148 chain 3972 chrX 155270560 + 131705604 131705651 MLT2A2 560 - 7 54 207810 47 chain 3129 chrX 155270560 + 131705927 131705960 MLT2A2 560 + 517 550 222384 33 chain 8264 chrX 155270560 + 131714163 131714251 U6 107 - 19 107 169597 88 chain 22370 chrX 155270560 + 131739990 131740276 L1PA7 6471 + 6184 6468 118627 123 0 7 8 7 0 137 2 0 9 chain 5662 chrX 155270560 + 131791767 131791847 MADE1 96 + 0 96 188457 38 4 20 38 chain 84258 chrX 155270560 + 131813289 131814343 MER11C 1089 - 26 1089 41797 325 0 1 38 1 0 7 0 4 110 48 46 211 0 4 67 0 1 6 0 2 241 chain 31052 chrX 155270560 + 131822403 131822779 THE1C 375 - 0 375 82435 26 1 0 349 chain 29133 chrX 155270560 + 131854545 131854938 L1M1 2793 + 2315 2695 88392 113 7 5 10 2 0 103 6 0 82 1 0 43 1 0 14 1 0 10 chain 74533 chrX 155270560 + 131856244 131857871 L1MA2 4263 + 1364 2441 46245 5 0 2 22 1 2 96 605 48 27 2 0 208 0 1 174 0 4 17 1 0 110 8 9 4 1 0 122 6 8 218 chain 4241 chrX 155270560 + 131860742 131860865 L1MB7 1623 - 30 131 203994 33 47 29 13 3 0 20 1 0 6 chain 6393 chrX 155270560 + 131929216 131929314 L1MB5 1630 - 169 266 182076 43 0 1 25 1 0 4 6 5 19 chain 9825 chrX 155270560 + 131946490 131946626 L1MB3 1562 - 652 776 161470 116 12 0 8 chain 22992 chrX 155270560 + 131947990 131948262 AluSg7 307 - 27 298 115661 148 1 0 123 chain 8907 chrX 155270560 + 131967806 131967903 L1PA3long 6157 - 7 104 166105 97 chain 31922 chrX 155270560 + 131972810 131973295 L1PB4 2604 + 1890 2377 80978 8 0 5 5 1 0 38 0 2 130 2 0 6 4 1 105 7 5 40 5 6 45 14 16 75 chain 88986 chrX 155270560 + 131999007 132000000 L1PA3long 6157 - 0 992 40010 857 1 0 135 chain 75724 chrX 155270560 + 132000822 132001670 L1P1 4361 - 33 879 45636 23 1 0 155 1 0 668 chain 350421 chrX 155270560 + 132001670 132005965 L1PA7 6471 + 2161 6466 11588 111 5 6 33 1 2 323 8 9 55 0 1 188 6 10 620 13 12 79 5 7 196 0 4 13 0 10 1335 0 1 69 1 2 140 0 1 95 1 2 8 2 0 32 11 0 77 0 4 15 1 0 151 1 0 80 5 0 284 0 1 176 1 0 136 1 0 17 chain 255479 chrX 155270560 + 132014655 132017526 L1PA5 6144 - 1 2872 15959 12 3 0 243 1 2 592 0 2 19 0 1 1597 2 0 304 0 1 98 chain 50224 chrX 155270560 + 132017573 132018265 LTR62 707 + 0 697 58848 136 9 13 145 1 3 16 9 7 213 4 5 159 chain 65885 chrX 155270560 + 132025415 132026145 L1PA3long 6157 - 0 730 50148 730 chain 26945 chrX 155270560 + 132046806 132047223 LTR27 711 + 55 494 96469 55 6 0 187 0 1 6 7 9 28 33 43 21 5 10 10 0 10 59 chain 22187 chrX 155270560 + 132056559 132057233 MER4E 760 - 7 375 119414 214 340 40 29 13 9 17 1 0 32 1 0 5 1 0 17 0 1 4 chain 228323 chrX 155270560 + 132077443 132080792 L1PA5 6144 + 3539 6131 17398 5 2 0 129 0 1 666 1 5 130 1 3 1333 762 0 320 chain 19320 chrX 155270560 + 132079802 132080022 L1PA5 6144 + 5908 6128 129178 220 chain 37222 chrX 155270560 + 132080040 132080472 L1PA5 6144 + 5374 5810 73205 310 1 5 121 chain 3838 chrX 155270560 + 132106454 132106505 MER3 215 + 84 142 209812 41 0 7 10 chain 16260 chrX 155270560 + 132120019 132120225 MSTB 430 + 224 429 137580 90 1 0 115 chain 541334 chrX 155270560 + 132143701 132149844 L1PA4 6152 + 12 6136 2615 232 0 1 70 2 1 260 1 0 70 20 13 8 0 7 162 17 0 408 1 0 1166 1 0 1271 1 0 7 1 3 2445 chain 6775 chrX 155270560 + 132153394 132153486 MLT2B1 522 - 401 495 179147 31 1 3 60 chain 464527 chrX 155270560 + 132170204 132176069 L1PA8 5853 - 5 5801 8238 88 1 0 17 5 4 49 5 4 7 1 0 36 3 0 35 2 0 44 1 0 394 1 2 157 0 2 678 16 17 55 12 15 28 2 1 73 3 4 28 0 5 184 0 3 204 1 0 326 2 5 391 0 1 61 1 0 48 6 5 396 0 1 73 29 1 700 0 1 495 1 0 184 0 3 715 19 7 65 0 1 4 6 5 115 52 16 13 1 0 10 2 0 20 chain 126622 chrX 155270560 + 132178222 132179878 LTR12C 1709 + 0 1709 28914 428 0 1 35 5 2 371 1 0 20 0 41 157 16 63 99 42 11 393 5 4 84 chain 9184 chrX 155270560 + 132191121 132191250 L1PA8 5853 - 0 127 164637 89 5 4 19 2 1 14 chain 452895 chrX 155270560 + 132196197 132201915 L1PA8 5853 + 108 5852 8659 193 19 7 291 0 4 59 4 1 7 0 1 12 0 28 24 18 19 31 0 3 149 5 6 264 4 0 6 0 4 808 0 1 459 3 7 195 2 0 219 2 3 216 2 1 318 1 3 65 0 1 262 0 1 263 0 1 195 0 1 326 8 9 153 1 0 285 2 0 482 1 2 71 1 0 37 0 1 6 2 0 52 36 0 8 1 36 36 2 1 19 1 0 92 chain 9273 chrX 155270560 + 132212155 132212326 MSTB 430 + 218 390 164197 97 47 48 27 chain 6835 chrX 155270560 + 132219269 132219368 L1PB1 5432 - 155 256 178691 41 14 16 44 chain 60496 chrX 155270560 + 132236861 132237626 L1PA7 6471 - 3 771 52581 35 9 0 6 1 10 191 4 3 364 0 3 10 3 4 142 chain 14485 chrX 155270560 + 132240350 132240526 Tigger3a 397 + 198 374 142929 176 chain 8051 chrX 155270560 + 132241007 132241109 MSTB 430 - 330 430 170747 45 2 0 55 chain 261745 chrX 155270560 + 132242446 132245408 L1PA4 6152 - 2 2964 15598 849 1 0 94 0 1 1267 0 1 734 1 0 16 chain 460413 chrX 155270560 + 132245408 132250556 L1PA3long 6157 + 1007 6156 8387 22 0 1 4277 1 0 515 1 2 332 chain 21800 chrX 155270560 + 132250599 132250917 Tigger3b 1229 - 863 1198 121021 31 8 9 28 6 5 168 1 18 76 chain 31654 chrX 155270560 + 132255606 132256038 MER83 447 + 0 437 81399 143 16 15 88 5 11 180 chain 85591 chrX 155270560 + 132257594 132258866 L1PA15 4387 - 73 1360 41310 42 8 5 50 1 0 32 2 1 45 6 8 25 6 5 54 4 5 109 1 0 26 96 94 182 0 3 76 1 0 161 4 7 76 3 10 85 1 9 138 0 1 38 chain 23979 chrX 155270560 + 132279861 132280198 Tigger2 2703 - 55 417 110453 101 5 33 147 9 3 36 1 4 38 chain 14722 chrX 155270560 + 132290504 132290682 L1PA6 6164 - 2 184 142191 52 0 4 126 chain 467176 chrX 155270560 + 132293900 132300610 L1PA7 6471 + 819 6453 8143 433 0 19 675 0 4 41 0 2 258 0 3 373 42 20 48 0 1 807 2 0 702 0 1 279 0 1 475 0 1 552 1076 1 19 10 0 87 2 0 132 0 3 697 chain 79455 chrX 155270560 + 132298610 132299657 MER11C 1089 - 26 1089 43846 143 1 0 55 1 2 125 0 1 38 1 0 4 1 5 112 46 45 212 0 4 61 0 9 247 chain 25328 chrX 155270560 + 132303232 132303589 THE1B 368 - 2 368 103081 123 29 42 5 3 0 27 1 0 169 chain 12624 chrX 155270560 + 132304974 132305166 MLT1B 390 - 0 193 149755 90 7 9 10 11 10 74 chain 17926 chrX 155270560 + 132333899 132334173 L1PA14 3548 - 109 374 133041 24 1 0 14 10 8 15 4 2 32 6 2 10 1 0 55 0 2 54 1 0 47 chain 9865 chrX 155270560 + 132339998 132340189 MER4D1 891 - 442 631 161263 19 1 0 13 2 0 6 1 2 40 29 28 29 3 4 48 chain 10510 chrX 155270560 + 132340524 132340730 MER30 238 + 0 230 158208 17 14 23 27 32 52 8 4 0 67 1 0 36 chain 3935 chrX 155270560 + 132352692 132352742 MSTD 398 - 349 398 208331 28 1 0 21 chain 6531 chrX 155270560 + 132354120 132354337 MER31B 477 - 138 355 181002 21 8 7 39 32 7 13 9 84 23 49 0 23 chain 17755 chrX 155270560 + 132384074 132384308 MER30 238 + 0 238 133551 30 4 0 76 4 6 40 0 6 80 chain 16008 chrX 155270560 + 132397089 132397412 THE1B 368 - 39 368 138333 17 7 6 44 82 88 57 12 13 104 chain 25782 chrX 155270560 + 132411289 132411645 THE1B 368 + 0 366 100951 198 35 45 123 chain 533534 chrX 155270560 + 132412725 132419149 L1PA7 6471 + 3 6469 3761 400 0 3 35 0 21 124 0 38 1009 0 1 123 3 0 875 15 0 529 0 1 210 7 9 9 0 1 106 2 0 25 10 0 8 7 1 18 0 4 30 0 3 339 0 1 599 0 4 142 0 4 946 1 0 26 3 4 59 1 0 421 1 0 328 3 0 10 chain 3573 chrX 155270560 + 132434021 132434063 MADE1 96 - 54 96 214088 42 chain 3483 chrX 155270560 + 132480102 132480159 MER51A 677 - 447 494 215629 31 10 0 16 chain 28567 chrX 155270560 + 132488596 132488895 AluYb8 318 - 19 318 90883 299 chain 3128 chrX 155270560 + 132500925 132500985 MER51A 677 + 203 308 222398 31 13 58 16 chain 9947 chrX 155270560 + 132534046 132534174 MER101 471 + 345 471 160850 22 2 0 104 chain 15575 chrX 155270560 + 132537238 132537552 MLT1A0 366 - 0 336 139656 109 92 96 45 3 21 65 chain 22149 chrX 155270560 + 132542498 132542776 AluSp 311 + 14 298 119594 38 1 5 148 1 3 90 chain 2847 chrX 155270560 + 132555127 132555157 MER51A 677 + 201 231 227915 30 chain 10463 chrX 155270560 + 132565662 132565818 MER30 238 + 55 228 158422 53 17 34 86 chain 46947 chrX 155270560 + 132568185 132568845 MER51A 677 - 0 677 61260 62 1 0 102 2 1 105 23 23 185 1 25 21 2 1 81 10 6 65 chain 68962 chrX 155270560 + 132590383 132591235 L1PA8 5853 - 6 844 48828 87 1 0 19 2 1 49 1 0 12 2 1 70 2 0 46 1 0 200 0 1 84 1 0 214 7 0 54 chain 3443 chrX 155270560 + 132591619 132591659 MLT2D 439 - 0 41 216310 4 0 1 36 chain 126125 chrX 155270560 + 132617233 132618724 SVA_B 1603 - 0 1603 29058 6 2 0 154 1 0 454 0 83 14 0 40 356 1 0 428 0 1 14 39 31 22 chain 30588 chrX 155270560 + 132620585 132620979 MLT2A1 477 - 92 477 83224 190 5 0 25 5 2 79 3 2 87 chain 10939 chrX 155270560 + 132674216 132674367 L1PB2 3958 + 3690 3838 156448 64 2 0 20 2 1 63 chain 26314 chrX 155270560 + 132682692 132683048 THE1B 368 + 0 368 98771 44 7 22 106 2 1 133 3 1 61 chain 41706 chrX 155270560 + 132688446 132688978 LTR10A 586 + 23 586 67019 36 0 8 7 5 6 23 0 21 17 1 0 65 0 1 73 2 3 303 chain 20349 chrX 155270560 + 132726154 132726401 L1PA5 6144 - 0 241 126069 140 7 0 85 0 1 15 chain 22543 chrX 155270560 + 132735824 132736172 L1MA5 2750 + 2316 2661 117831 12 0 1 208 1 0 25 1 0 37 18 18 14 8 7 8 1 0 15 chain 3602 chrX 155270560 + 132749495 132749533 L1PA7 6471 + 6172 6210 213615 38 chain 21638 chrX 155270560 + 132749533 132749792 L1PA7 6471 + 6211 6470 121619 259 chain 36559 chrX 155270560 + 132754523 132755112 MER4B 649 + 0 641 74160 30 1 0 24 18 16 13 1 0 28 1 2 32 4 0 12 0 42 18 22 23 105 8 23 117 5 8 69 1 0 71 1 0 8 chain 527066 chrX 155270560 + 132755214 132761348 L1PA5 6144 + 0 6139 4496 135 1 15 1019 9 0 117 14 2 127 0 5 252 0 8 259 1 0 162 0 1 296 2 3 394 0 1 392 1 0 321 1 0 166 4 0 801 0 2 715 1 2 41 3 4 54 1 0 557 0 1 274 1 0 13 chain 36841 chrX 155270560 + 132765161 132765877 L1MB2 1706 - 12 695 73746 43 96 83 15 13 12 67 2 4 66 0 1 49 1 0 20 29 21 54 37 32 160 7 0 26 1 0 30 chain 18675 chrX 155270560 + 132772749 132772983 MER30 238 - 0 238 131011 123 8 12 103 chain 17545 chrX 155270560 + 132805710 132805939 L1PA6 6164 - 3 253 134140 21 0 21 102 16 16 90 chain 14548 chrX 155270560 + 132837898 132838114 MER30 238 - 0 238 142732 48 3 0 25 0 8 17 17 34 106 chain 43817 chrX 155270560 + 132848978 132849522 MLT2A2 560 + 0 553 64430 205 1 0 106 1 0 88 3 14 140 chain 40515 chrX 155270560 + 132851337 132851800 LTR2 463 + 0 463 68573 463 chain 10598 chrX 155270560 + 132853553 132853669 L1PA2 6032 + 5916 6032 157834 116 chain 40840 chrX 155270560 + 132853729 132854312 L1PB2 3958 + 3206 3808 68114 101 2 0 50 1 4 13 4 0 57 9 7 13 4 0 17 0 5 65 1 0 79 1 0 47 4 15 36 0 15 44 2 1 33 chain 28357 chrX 155270560 + 132854312 132854668 THE1B 368 + 0 368 91742 44 0 15 110 1 0 24 2 0 175 chain 2611 chrX 155270560 + 132861079 132861115 MIR 256 + 110 146 231532 26 1 0 4 0 1 5 chain 8364 chrX 155270560 + 132871087 132871374 L1MC1 2226 + 1914 2179 169051 45 19 25 10 2 0 41 84 70 16 1 0 7 10 1 10 1 0 10 5 4 26 chain 117340 chrX 155270560 + 132877830 132879182 L1PA7 6471 + 5100 6454 32013 447 0 1 775 0 1 130 chain 64952 chrX 155270560 + 132896312 132898246 L1PA16 3655 + 2663 3538 50592 11 1 0 171 1 2 55 1 0 4 0 4 11 1 0 70 2 0 84 1056 0 125 7 6 84 3 1 247 chain 22564 chrX 155270560 + 132953022 132953268 L1PA3long 6157 - 0 246 117746 246 chain 3061 chrX 155270560 + 132976481 132976518 MLT2A1 477 + 441 477 223806 17 1 0 19 chain 29335 chrX 155270560 + 132997675 132997981 AluYb8 318 - 12 318 87374 306 chain 24331 chrX 155270560 + 133003692 133003988 AluY 311 + 0 289 108476 78 6 0 55 1 0 156 chain 8835 chrX 155270560 + 133021606 133021726 MER85 139 + 0 131 166463 96 3 14 21 chain 66817 chrX 155270560 + 133021954 133022748 L1PA7 6471 - 1 798 49723 12 0 2 753 7 8 22 chain 2979 chrX 155270560 + 133074488 133074522 MIRb 242 + 109 143 225462 34 chain 3349 chrX 155270560 + 133107340 133107378 MIRb 242 + 94 132 218061 38 chain 5814 chrX 155270560 + 133129551 133129634 L1MB1 2102 + 1926 2007 187002 13 3 1 67 chain 13809 chrX 155270560 + 133137906 133138062 L1PA4 6152 + 5996 6152 145225 156 chain 38625 chrX 155270560 + 133149405 133149828 L1PA6 6164 - 12 435 71259 423 chain 13612 chrX 155270560 + 133157613 133157874 L1MB8 1703 - 46 272 145928 23 15 6 22 42 18 152 2 0 5 chain 32990 chrX 155270560 + 133165004 133165397 L1PA7 6471 - 7 400 79233 393 chain 540671 chrX 155270560 + 133178201 133184330 L1PA4 6152 - 11 6146 2714 839 0 1 123 2 1 293 2 0 184 2 1 353 0 1 836 1 0 65 0 3 2015 0 2 170 0 1 189 0 2 22 0 1 1033 chain 159879 chrX 155270560 + 133185926 133187849 L1PA8 5853 - 0 1924 23356 92 2 1 16 1 0 25 1 0 42 0 1 68 2 0 44 1 0 43 0 1 156 4 5 265 1 0 81 0 5 674 5 1 268 0 4 132 chain 518820 chrX 155270560 + 133190663 133196807 L1PA5 6144 - 2 6144 5289 7 6 0 141 13 13 335 0 1 768 2 0 761 0 5 893 0 1 59 1 0 13 7 12 167 3 5 383 0 2 95 0 2 173 2 0 111 0 2 285 0 1 111 0 1 13 2 1 327 4 0 6 19 6 271 9 0 810 20 20 207 2 16 118 chain 3319 chrX 155270560 + 133196889 133196930 L1MB7 1623 - 481 524 218606 31 0 2 10 chain 8089 chrX 155270560 + 133198707 133198814 MLT1A1 405 + 299 405 170552 94 1 0 12 chain 55740 chrX 155270560 + 133201048 133201669 L1PA4 6152 + 5522 6143 55277 621 chain 5228 chrX 155270560 + 133202279 133202344 HY3 101 + 34 100 192740 17 0 1 48 chain 17587 chrX 155270560 + 133203012 133203206 L1PA3long 6157 + 5948 6142 134033 194 chain 522148 chrX 155270560 + 133213523 133219632 L1PA5 6144 + 0 6144 4941 120 32 58 991 9 0 963 0 1 60 0 4 116 4 1 848 1 2 6 1 0 257 0 1 355 0 2 170 0 1 32 0 1 353 0 8 95 0 3 1696 chain 36076 chrX 155270560 + 133231922 133232352 L1PA7 6471 + 6024 6455 74789 28 0 1 402 chain 4732 chrX 155270560 + 133236399 133236452 MLT1B-int 1170 + 156 209 198150 53 chain 31914 chrX 155270560 + 133237863 133238312 L1PA8 5853 + 5417 5853 80990 8 0 2 59 8 0 78 2 1 43 2 0 70 2 1 14 16 15 35 1 0 17 1 0 93 chain 540451 chrX 155270560 + 133251209 133257355 L1PA4 6152 + 0 6152 2744 512 4 5 218 0 1 303 0 1 22 0 2 3635 6 5 180 2 0 850 2 1 406 0 5 6 chain 5967 chrX 155270560 + 133257453 133257551 L1MB8 1703 - 634 732 185533 38 0 7 8 11 4 41 chain 16657 chrX 155270560 + 133261207 133261418 L1PA8 5853 - 7 214 136518 86 1 0 19 2 1 46 1 0 12 1 0 43 chain 4750 chrX 155270560 + 133264389 133264447 MER58A 224 - 123 181 197919 58 chain 23982 chrX 155270560 + 133269938 133270314 MSTA 426 + 0 426 110432 63 5 4 32 28 57 58 7 12 11 3 0 59 1 21 109 chain 7861 chrX 155270560 + 133276263 133276360 HY1 111 - 4 101 171925 97 chain 5452 chrX 155270560 + 133276925 133276991 MLT1A0 366 - 280 346 190514 66 chain 3608 chrX 155270560 + 133283018 133283090 L2a 937 + 15 81 213501 12 20 14 40 chain 93876 chrX 155270560 + 133327242 133328305 L1PA6 6164 + 5099 6161 38392 215 0 1 682 1 0 155 1 0 9 chain 25233 chrX 155270560 + 133348399 133348695 AluSp 311 - 14 311 103572 32 0 1 264 chain 35601 chrX 155270560 + 133348711 133349173 MER41A 554 - 86 554 75411 40 15 11 35 0 1 160 0 9 212 chain 138825 chrX 155270560 + 133349184 133351581 MER41-int 2638 - 4 1797 26345 180 1 2 349 2 0 5 4 6 68 1 3 110 2 0 36 2 0 207 1 0 115 292 0 238 1 2 157 1 2 199 312 0 114 chain 9217 chrX 155270560 + 133355668 133355911 L1MB7 1623 + 1208 1421 164470 16 5 1 22 8 0 4 3 0 14 5 1 19 1 0 6 1 0 5 10 7 20 1 0 6 16 14 20 3 1 11 1 0 46 chain 39999 chrX 155270560 + 133416830 133417366 MER1A 529 + 0 529 69321 279 4 0 172 23 20 58 chain 121653 chrX 155270560 + 133419373 133420767 SVA_B 1603 - 1 1603 30496 12 0 1 627 4 84 199 0 116 510 21 32 21 chain 279335 chrX 155270560 + 133435223 133439466 L1MA1 4479 + 227 4163 14673 18 0 4 30 2 0 421 0 4 81 1 9 49 2 4 42 1 0 94 0 5 10 5 11 200 0 1 225 11 17 45 0 1 103 0 1 76 1 0 412 3 1 281 2 4 33 27 38 62 10 12 47 0 1 33 1 0 65 2 1 103 2 0 33 1 0 60 3 2 92 1 0 23 0 13 94 0 7 63 2 0 93 1 0 12 5 0 53 341 29 26 6 7 5 1 0 6 3 0 128 4 2 11 4 5 180 1 0 24 2 0 56 0 1 30 1 0 20 2 0 13 1 0 69 0 1 5 1 0 13 1 0 5 3 0 13 0 1 35 0 8 27 37 0 31 11 10 30 2 0 16 1 0 19 1 0 10 1 0 11 chain 206070 chrX 155270560 + 133442911 133445574 L1PA6 6164 + 3778 6160 18785 620 286 0 280 2 1 236 6 7 392 1 5 426 0 1 414 chain 43707 chrX 155270560 + 133460394 133460918 L1PA7 6471 + 5944 6468 64558 81 5 6 290 1 2 136 2 0 9 chain 180817 chrX 155270560 + 133462500 133464527 L1PA3long 6157 + 4047 6149 20918 181 5 81 998 1 0 842 chain 13997 chrX 155270560 + 133465527 133465686 L1PA5 6144 + 5978 6142 144587 51 0 5 108 chain 22968 chrX 155270560 + 133471906 133472193 AluSg4 309 + 10 293 115769 31 9 5 247 chain 59779 chrX 155270560 + 133480019 133480718 L1PA7 6471 - 4 700 52941 6 4 0 328 1 2 360 chain 15437 chrX 155270560 + 133485732 133485928 Tigger3c 601 + 334 540 140087 31 0 10 165 chain 24870 chrX 155270560 + 133520444 133520736 AluSc5 308 - 14 299 105519 189 7 0 96 chain 20142 chrX 155270560 + 133557916 133558151 L1PA5 6144 + 5909 6143 126700 217 1 0 17 chain 25721 chrX 155270560 + 133590189 133590496 AluY 311 + 0 303 101211 64 3 1 58 1 0 10 1 0 170 chain 2815 chrX 155270560 + 133596912 133596967 MIRb 242 - 137 201 228528 27 14 23 14 chain 5420 chrX 155270560 + 133600577 133600657 MLT1A 405 + 305 389 190803 44 8 12 28 chain 24289 chrX 155270560 + 133613304 133613590 AluSq10 312 - 17 303 108712 286 chain 3047 chrX 155270560 + 133621001 133621033 MIR 256 + 79 111 224060 32 chain 3026 chrX 155270560 + 133628671 133628708 MADE1 96 - 59 96 224449 37 chain 12325 chrX 155270560 + 133638314 133638520 MER30 238 - 0 238 150910 36 7 4 72 2 19 49 25 43 15 chain 13063 chrX 155270560 + 133667615 133667776 LTR8 732 + 571 732 147975 161 chain 3734 chrX 155270560 + 133697161 133697243 MIRb 242 + 98 179 211397 31 29 28 22 chain 27299 chrX 155270560 + 133726360 133727144 MLT2D 439 + 0 439 95278 63 29 26 100 0 2 158 386 42 48 chain 5026 chrX 155270560 + 133777897 133777958 MIR 256 + 73 134 194862 61 chain 30336 chrX 155270560 + 133783829 133784376 MER39 703 + 37 703 83814 42 12 0 11 5 14 31 19 66 13 51 120 97 11 8 30 1 3 18 0 8 110 2 0 18 0 1 76 chain 24842 chrX 155270560 + 133830776 133831075 AluY 311 + 0 295 105666 125 4 1 65 1 0 104 chain 40692 chrX 155270560 + 133836061 133836680 L1PA16 3655 + 3032 3619 68307 41 1 0 128 1 0 16 7 4 38 1 0 5 1 2 13 2 0 5 0 2 5 2 0 126 5 4 111 1 0 45 3 0 15 19 0 12 2 1 14 chain 21100 chrX 155270560 + 133841338 133841635 L1PA6 6164 - 4 271 123554 6 3 0 159 32 5 97 chain 4905 chrX 155270560 + 133853055 133853113 L1MB5 1630 + 1410 1468 196225 58 chain 11653 chrX 155270560 + 133894235 133894378 U4 144 - 1 144 153677 143 chain 24549 chrX 155270560 + 133896570 133896880 AluSg4 309 + 0 309 107262 37 7 0 140 1 7 125 chain 8910 chrX 155270560 + 133935720 133935992 MER83B-int 1116 - 200 465 166088 33 27 19 13 5 8 38 1 2 40 90 87 25 chain 17935 chrX 155270560 + 133937093 133937403 MER83B 357 - 23 357 133017 153 0 16 13 43 21 14 4 22 43 0 17 18 5 0 17 chain 111256 chrX 155270560 + 133967614 133968928 L1PA8A 6298 - 14 1345 33876 8 0 9 788 0 8 518 chain 149902 chrX 155270560 + 133972709 133974403 SVA_D 2077 + 20 2077 24622 623 0 39 135 40 0 99 0 313 122 1 50 141 1 0 179 0 3 353 chain 3743 chrX 155270560 + 133995734 133995776 MADE1 96 + 54 96 211281 42 chain 25230 chrX 155270560 + 134008048 134008412 THE1C 375 - 0 375 103591 25 1 0 8 4 0 84 1 0 60 3 4 4 1 0 12 0 1 38 0 4 10 3 0 12 0 17 34 1 0 36 4 3 23 chain 2938 chrX 155270560 + 134018345 134018402 L1MC1 2226 + 2129 2184 226362 6 1 0 17 10 9 23 chain 6154 chrX 155270560 + 134029788 134029867 MADE1 96 - 1 96 183947 50 0 16 29 chain 24163 chrX 155270560 + 134050426 134050720 AluY 311 + 0 299 109409 50 0 4 43 0 2 24 1 0 176 chain 14748 chrX 155270560 + 134060125 134060553 LTR12C 1709 + 769 1542 142110 25 0 2 41 1 0 32 10 51 49 0 41 27 199 461 44 chain 27727 chrX 155270560 + 134079070 134079484 LTR7B 505 + 8 494 93943 97 0 10 60 0 38 12 34 60 79 1 0 77 14 13 40 chain 27774 chrX 155270560 + 134080363 134080749 LTR7 482 + 0 469 93782 101 15 14 17 0 51 41 5 37 46 0 1 161 chain 28667 chrX 155270560 + 134084501 134084897 L1P3 4156 + 0 401 90461 183 1 0 50 25 32 54 1 0 82 chain 36067 chrX 155270560 + 134085797 134086214 L1PA7 6471 + 6048 6465 74806 417 chain 130419 chrX 155270560 + 134093737 134095193 SVA_D 2077 + 0 2073 27983 36 1 3 189 0 1 158 0 3 76 0 76 337 0 535 659 chain 29789 chrX 155270560 + 134098701 134099128 MSTA 426 - 0 426 85512 109 4 7 109 5 1 52 16 15 59 3 4 70 chain 18252 chrX 155270560 + 134107405 134107765 THE1B 368 - 0 368 132197 33 0 2 84 74 80 37 26 27 57 0 1 31 3 1 15 chain 86301 chrX 155270560 + 134114170 134115459 L1PB2 3958 - 120 1401 41041 63 2 1 21 10 8 13 7 8 42 2 1 64 1 0 6 0 1 32 2 1 23 10 9 93 4 0 14 7 5 55 2 1 16 39 38 16 2 0 297 6 7 39 0 1 110 1 6 290 chain 5938 chrX 155270560 + 134116824 134116897 MER41B 635 - 81 155 185809 42 0 1 31 chain 20023 chrX 155270560 + 134154159 134154393 L1PA4 6152 + 5910 6141 127071 120 4 0 8 0 1 102 chain 76026 chrX 155270560 + 134157881 134158752 MER11D 897 + 0 897 45467 502 1 3 69 0 23 186 0 1 113 chain 10344 chrX 155270560 + 134160328 134160455 L1PB 1623 - 869 996 158580 127 chain 89981 chrX 155270560 + 134160455 134162405 L1PB2 3958 + 2409 3838 39655 68 0 6 7 1 0 85 4 8 157 3 0 131 5 15 32 12 15 130 1 0 165 0 2 5 5 6 39 10 27 49 6 5 16 4 6 48 23 20 4 1 0 36 551 0 54 14 13 59 1 0 64 2 1 22 4 10 11 14 9 19 2 0 22 1 0 63 chain 7055 chrX 155270560 + 134161512 134161588 L1HS 6032 - 438 514 177064 76 chain 42050 chrX 155270560 + 134161588 134162039 L1HS 6032 + 5581 6032 66557 451 chain 71637 chrX 155270560 + 134164374 134165335 LTR5_Hs 974 + 0 974 47634 459 0 4 195 1 2 9 24 25 82 7 7 112 0 9 36 3 1 33 chain 115209 chrX 155270560 + 134176730 134178417 L1PA15 4387 - 60 1732 32713 12 4 2 37 12 9 37 2 5 8 1 0 16 4 0 16 6 5 50 1 0 25 2 1 79 13 12 81 1 0 25 21 20 51 20 19 4 1 0 89 0 1 250 8 9 227 3 0 65 7 6 100 11 10 127 0 1 193 1 3 77 chain 40368 chrX 155270560 + 134182262 134182706 L1PA3long 6157 + 5712 6156 68779 444 chain 23632 chrX 155270560 + 134187083 134187356 AluY 311 + 36 310 112405 96 0 1 177 chain 81315 chrX 155270560 + 134200116 134201056 LTR13_ 950 + 11 950 43035 145 0 1 114 0 2 121 1 0 258 2 0 147 1 0 151 chain 3649 chrX 155270560 + 134206092 134206142 MER94 134 + 20 70 212808 50 chain 132359 chrX 155270560 + 134206146 134207989 L1PA5 6144 - 14 1515 27549 4 1 0 320 0 1 485 341 0 354 2 0 144 1 2 191 chain 14252 chrX 155270560 + 134216577 134216736 L1PA5 6144 - 0 159 143711 159 chain 114271 chrX 155270560 + 134222725 134224259 THE1C-int 1605 + 0 1605 33007 18 1 0 78 0 57 17 10 7 151 14 20 82 15 22 307 8 2 319 7 0 136 5 18 245 0 5 121 chain 21404 chrX 155270560 + 134234543 134234927 THE1D 372 + 0 372 122494 54 9 0 13 23 24 48 0 1 24 56 51 157 chain 4616 chrX 155270560 + 134262194 134262286 MLT1D 503 - 367 460 199446 37 22 23 33 chain 6659 chrX 155270560 + 134270235 134270350 L1MA3 4352 - 309 414 180005 44 21 11 50 chain 118344 chrX 155270560 + 134277846 134279157 L1PA4 6152 - 1 1314 31675 882 0 1 210 0 1 219 chain 38535 chrX 155270560 + 134279157 134279580 L1PA4 6152 + 4369 4792 71005 423 chain 20847 chrX 155270560 + 134315877 134316110 L1PA5 6144 - 16 249 124471 233 chain 82631 chrX 155270560 + 134340247 134341253 LTR13 1007 + 0 1007 42491 42 0 2 337 4 5 242 2 1 54 0 2 9 2 0 5 2 0 116 0 1 191 chain 38535 chrX 155270560 + 134360830 134361253 L1PA4 6152 - 1360 1783 71006 423 chain 118344 chrX 155270560 + 134361253 134362564 L1PA4 6152 + 4838 6151 31672 219 0 1 210 0 1 882 chain 6659 chrX 155270560 + 134370060 134370175 L1MA3 4352 + 3938 4043 180004 50 21 11 44 chain 518673 chrX 155270560 + 134391827 134397896 L1PA6 6164 - 65 6164 5312 301 0 17 232 0 1 360 0 1 827 0 2 1054 3 0 247 0 2 524 0 1 204 0 1 310 0 4 645 0 1 220 0 1 525 0 1 51 1 0 48 0 2 49 10 9 197 1 0 23 0 2 237 chain 29961 chrX 155270560 + 134406610 134407010 MER51B 395 + 0 386 84932 26 26 13 206 1 0 141 chain 531661 chrX 155270560 + 134410422 134416879 L1PA7 6471 - 2 6471 4001 10 2 0 138 36 0 8 5 38 199 9 10 301 0 3 137 0 1 622 0 1 22 1 0 24 2 0 278 3 6 384 1 0 282 9 5 7 0 4 159 0 1 250 0 2 477 0 4 451 14 10 4 0 1 857 0 4 1253 0 1 55 0 1 48 1 3 208 63 63 137 chain 82417 chrX 155270560 + 134436664 134437627 LTR5_Hs 974 - 0 974 42578 71 0 1 32 3 2 34 5 12 810 0 4 8 chain 31420 chrX 155270560 + 134455684 134456150 LTR22B 500 + 0 500 81782 34 0 6 8 0 3 71 39 35 198 14 41 81 0 1 11 0 1 10 chain 146050 chrX 155270560 + 134459199 134460906 LTR12C 1709 + 0 1709 25159 189 20 1 9 0 20 15 0 1 602 1 0 275 1 0 4 4 2 106 0 4 481 chain 27076 chrX 155270560 + 134510672 134511079 MSTA 426 + 0 405 96018 129 2 0 9 5 12 70 31 29 44 6 0 83 0 1 28 chain 14824 chrX 155270560 + 134520552 134520723 MER4A1 472 + 0 171 141870 171 chain 32075 chrX 155270560 + 134520732 134521106 L1PA4 6152 - 10 385 80729 128 0 7 10 7 0 110 0 1 119 chain 120349 chrX 155270560 + 134521112 134522455 L1P1 4361 + 2516 3862 30924 638 0 2 103 0 2 242 1 0 359 chain 18226 chrX 155270560 + 134522775 134523038 MLT2B4 540 - 238 539 132269 37 20 58 206 chain 14644 chrX 155270560 + 134527301 134527551 MLT2A1 477 + 0 265 142443 44 9 8 21 0 1 31 5 15 22 9 10 17 0 4 18 1 0 4 3 5 5 1 0 60 chain 70810 chrX 155270560 + 134527892 134529033 HERVL-int 5654 + 4804 5654 48008 261 302 0 296 0 3 61 0 7 48 0 1 173 chain 84353 chrX 155270560 + 134540023 134540991 LTR5_Hs 974 + 1 974 41769 821 5 12 36 2 0 104 chain 87291 chrX 155270560 + 134548002 134549067 L1PA7 6471 + 5416 6461 40646 9 5 0 187 30 15 834 chain 38233 chrX 155270560 + 134573811 134574475 L1PA15 4387 + 3711 4366 71799 102 2 0 16 4 0 6 5 6 18 12 14 16 6 4 40 1 0 167 5 4 26 1 0 55 1 0 22 4 0 11 1 0 8 36 48 42 2 0 10 7 3 27 1 0 10 chain 16473 chrX 155270560 + 134595880 134596076 L1PB1 5432 - 882 1078 136550 196 chain 63312 chrX 155270560 + 134596076 134597037 L1PB1 5432 + 4544 5413 51315 35 2 0 47 3 0 12 0 1 464 1 2 9 3 0 21 1 0 12 1 0 9 10 6 5 2 0 52 1 0 18 1 0 43 1 0 16 4 1 12 9 0 16 66 8 13 2 0 24 1 0 21 1 0 13 1 0 9 chain 136282 chrX 155270560 + 134599406 134601469 L1MA3 4352 + 2325 4352 26785 185 5 0 9 0 3 65 1 0 249 0 1 143 0 2 73 9 10 12 3 4 416 1 2 79 3 0 28 5 4 51 76 75 167 0 1 74 4 3 51 2 1 37 6 7 15 30 14 7 3 0 57 2 3 63 4 0 18 6 4 17 3 0 5 1 3 5 1 0 5 3 0 24 1 0 11 6 2 22 chain 93327 chrX 155270560 + 134613805 134615678 HSMAR1 1287 - 0 1287 38558 99 601 0 588 19 21 18 3 4 127 1 2 90 0 13 151 0 11 36 31 17 31 0 1 78 chain 17327 chrX 155270560 + 134641631 134641945 L1PB3 3668 - 102 389 134720 31 9 7 25 1 0 21 34 14 73 6 5 20 0 1 53 4 0 19 0 1 5 1 0 12 chain 6469 chrX 155270560 + 134722718 134722867 L1MB5 1630 + 442 592 181482 45 58 59 46 chain 5512 chrX 155270560 + 134727823 134727902 MADE1 96 + 0 96 189921 26 0 1 12 1 17 40 chain 147129 chrX 155270560 + 134734707 134737002 L1PA11 4918 - 352 2340 25010 12 1 0 15 13 9 10 8 3 9 4 0 20 1 0 13 4 2 66 2 0 13 7 6 49 1 2 5 1 0 4 3 0 4 2 0 351 0 1 148 1 3 154 12 13 137 0 2 151 288 0 262 0 1 473 1 0 50 chain 3921 chrX 155270560 + 134751263 134751711 ERVL-B4-int 2334 - 1087 1546 208544 34 72 78 16 300 305 26 chain 53638 chrX 155270560 + 134754602 134755187 L1PA3long 6157 + 5557 6142 56597 585 chain 44049 chrX 155270560 + 134758216 134758808 LTR43 600 - 0 600 64153 141 15 16 155 6 13 275 chain 507971 chrX 155270560 + 134793236 134799380 L1PA6 6164 - 2 6164 6324 6 4 0 764 0 1 62 0 1 139 0 2 9 0 1 810 1 5 1171 0 1 862 11 5 180 0 12 578 0 1 70 0 1 52 5 0 9 1 6 692 2 1 211 2 1 101 22 27 178 63 64 139 chain 53875 chrX 155270560 + 134801455 134802052 L1PA3long 6157 - 2 600 56444 343 0 1 254 chain 146048 chrX 155270560 + 134815915 134817842 L1PA11 4918 + 2578 4504 25160 390 45 45 88 0 1 89 0 2 127 0 1 24 0 1 475 1 3 148 0 1 351 3 0 4 2 0 65 2 1 79 3 1 15 1 0 15 chain 46341 chrX 155270560 + 134849481 134850051 L1PA7 6471 - 15 609 61734 113 0 1 18 0 1 14 12 13 108 0 21 305 chain 133967 chrX 155270560 + 134858102 134859593 L1PA4 6152 - 9 1500 27217 1491 chain 31603 chrX 155270560 + 134859593 134859949 L1PA4 6152 + 4302 4658 81199 356 chain 28589 chrX 155270560 + 134868026 134868383 L1PA7 6471 - 12 391 90787 117 0 1 153 0 21 87 chain 133386 chrX 155270560 + 134875374 134876868 L1PA4 6152 - 9 1500 27345 1089 3 0 402 chain 31855 chrX 155270560 + 134876868 134877224 L1PA4 6152 + 4302 4658 80806 356 chain 28794 chrX 155270560 + 134885297 134885654 L1PA7 6471 - 12 391 89926 117 0 1 153 0 21 87 chain 285453 chrX 155270560 + 134892920 134896123 L1PA4 6152 - 0 3197 14325 259 0 1 1077 5 0 380 1 0 121 1 0 375 0 1 761 1 0 222 chain 92921 chrX 155270560 + 134896123 134897259 L1PA6 6164 + 4781 6159 38654 303 3 0 87 4 5 61 0 165 538 6 85 134 chain 38636 chrX 155270560 + 134899606 134900226 L1MA3 4352 - 24 615 71238 13 2 1 19 0 1 6 1 0 6 1 0 47 5 1 63 0 3 30 88 62 339 chain 17768 chrX 155270560 + 134903247 134903652 LTR14B 630 - 0 626 133521 35 81 84 80 21 31 30 0 10 33 32 53 39 0 179 37 3 1 14 chain 49366 chrX 155270560 + 134913155 134913705 L1PA4 6152 + 5602 6152 59476 550 chain 19979 chrX 155270560 + 134915512 134915916 LTR14B 630 + 0 630 127212 56 0 179 39 32 53 33 12 22 18 15 25 86 44 50 69 chain 81820 chrX 155270560 + 134916007 134917016 LTR13 1007 - 0 1007 42835 38 2 0 6 0 2 148 0 1 125 3 1 57 2 1 202 1 0 22 0 3 6 3 0 9 0 1 385 chain 37488 chrX 155270560 + 134919969 134920574 L1MA3 4352 + 3752 4328 72826 324 88 62 30 0 3 63 5 1 47 1 0 6 1 0 6 0 1 19 2 1 13 chain 92921 chrX 155270560 + 134922921 134924057 L1PA6 6164 - 5 1383 38655 134 6 85 538 0 165 61 4 5 87 3 0 303 chain 285453 chrX 155270560 + 134924057 134927260 L1PA4 6152 + 2955 6152 14324 228 1 0 755 0 1 375 1 0 122 1 0 369 5 0 1087 0 1 259 chain 28589 chrX 155270560 + 134934565 134934922 L1PA7 6471 + 6080 6459 90786 87 0 21 154 0 1 116 chain 31855 chrX 155270560 + 134942998 134943354 L1PA4 6152 - 1494 1850 80807 356 chain 134041 chrX 155270560 + 134943354 134944845 L1PA4 6152 + 4652 6143 27196 1491 chain 28589 chrX 155270560 + 134951828 134952185 L1PA7 6471 + 6080 6459 90785 87 0 21 154 0 1 116 chain 31631 chrX 155270560 + 134960253 134960609 L1PA4 6152 - 1494 1850 81154 356 chain 133663 chrX 155270560 + 134960609 134962099 L1PA4 6152 + 4652 6143 27286 284 0 1 1206 chain 28794 chrX 155270560 + 134969077 134969434 L1PA7 6471 + 6080 6459 89925 87 0 21 154 0 1 116 chain 22416 chrX 155270560 + 134976252 134976511 AluSp 311 - 40 300 118401 49 0 1 210 chain 22981 chrX 155270560 + 134978719 134979009 AluSp 311 - 14 303 115710 155 12 10 84 0 1 39 chain 87994 chrX 155270560 + 134981585 134982712 L1PA10 4194 - 33 1161 40375 11 1 0 33 4 1 601 0 1 339 0 1 35 0 3 103 chain 5511 chrX 155270560 + 134998535 134998606 MLT1E3 631 + 560 631 189937 71 chain 44718 chrX 155270560 + 135002659 135003234 LTR43 600 - 24 600 63360 117 0 7 14 7 1 437 chain 11846 chrX 155270560 + 135007972 135008127 L1PA8 5853 - 0 153 152847 92 2 1 19 2 1 40 chain 20569 chrX 155270560 + 135014218 135014544 LTR13 1007 - 682 1007 125397 176 0 1 52 59 57 39 chain 515086 chrX 155270560 + 135018019 135024025 L1PA5 6144 - 1 6144 5661 10 1 3 124 1 8 11 7 0 832 4 5 114 1 0 423 0 1 342 0 4 273 0 3 266 0 81 308 1 8 68 1 3 1016 0 2 487 0 1 317 1 0 264 9 0 127 0 1 41 0 1 757 8 36 47 10 24 135 chain 6901 chrX 155270560 + 135032065 135032148 L1MB2 1706 + 1611 1694 178178 83 chain 32172 chrX 155270560 + 135060914 135061360 LOR1b 457 + 10 457 80577 17 5 15 106 3 0 34 0 1 5 12 5 264 chain 30126 chrX 155270560 + 135135226 135135618 MER1A 529 - 0 386 84395 62 7 1 8 2 0 34 0 2 279 chain 28476 chrX 155270560 + 135157997 135158310 AluYa5 310 + 0 310 91280 97 3 1 34 1 0 178 chain 6554 chrX 155270560 + 135188927 135189008 MER51A 677 + 0 81 180824 81 chain 8139 chrX 155270560 + 135202385 135202672 L1MB8 1703 - 41 268 170290 14 0 2 18 9 0 9 0 1 16 150 96 71 chain 30757 chrX 155270560 + 135206220 135206703 MER51A 677 + 4 661 82944 145 29 163 17 6 6 46 11 58 93 6 7 40 12 4 78 chain 24332 chrX 155270560 + 135213540 135213849 LOR1b 457 - 0 309 108474 309 chain 22200 chrX 155270560 + 135214039 135214288 L1PA2 6032 - 0 249 119352 249 chain 6462 chrX 155270560 + 135216502 135216579 U13 108 - 30 107 181535 77 chain 22412 chrX 155270560 + 135284644 135284923 AluSc 308 + 8 290 118426 20 3 5 245 0 1 11 chain 51608 chrX 155270560 + 135319894 135320466 L1PA4 6152 - 9 581 57887 572 chain 11810 chrX 155270560 + 135368414 135368571 MER30 238 - 0 175 152983 98 0 1 12 4 21 43 chain 28136 chrX 155270560 + 135368578 135368931 THE1B 368 - 0 368 92521 118 0 1 18 0 1 41 2 0 134 0 15 40 chain 29008 chrX 155270560 + 135372913 135373223 AluYa5 310 - 1 310 88946 216 1 0 93 chain 88388 chrX 155270560 + 135379083 135380064 L1PA4 6152 - 1787 2767 40194 683 1 0 297 chain 155923 chrX 155270560 + 135380064 135381849 L1PA4 6152 + 4363 6151 23866 794 4 5 84 1 0 58 12 14 828 0 1 4 chain 23585 chrX 155270560 + 135382052 135382366 LTR19B 566 - 0 312 112665 52 0 1 35 7 6 149 7 5 64 chain 156639 chrX 155270560 + 135382747 135384534 L1PA5 6144 - 0 1792 23779 1044 0 6 472 1 0 270 chain 11094 chrX 155270560 + 135384540 135384659 L1PA5 6144 + 4251 4370 155825 119 chain 18594 chrX 155270560 + 135413273 135413585 L1MA2 4263 - 124 425 131243 14 3 1 11 3 1 7 1 0 34 19 14 92 11 9 99 0 1 18 chain 96879 chrX 155270560 + 135414163 135415220 L1PA2 6032 - 0 1058 37591 908 0 1 149 chain 21600 chrX 155270560 + 135415222 135415452 L1PA2 6032 + 4742 4972 121768 230 chain 118034 chrX 155270560 + 135457418 135459172 L1PB2 3958 - 120 1792 31793 14 7 6 43 1 0 26 9 7 56 6 5 63 1 0 73 1 0 93 4 0 12 3 1 60 6 1 17 1 0 54 2 0 96 7 9 4 0 1 64 1 0 40 16 1 159 0 1 8 1 0 174 1 3 29 0 2 16 0 1 4 0 3 28 0 2 55 0 1 111 77 16 17 1 2 194 1 2 98 chain 33303 chrX 155270560 + 135463784 135464266 MLT2A1 477 - 0 477 78727 48 5 33 12 33 1 60 1 0 149 1 5 18 17 13 138 chain 81070 chrX 155270560 + 135464266 135465228 HERVL-int 5654 - 0 969 43153 224 1 2 15 0 1 347 0 5 375 chain 35966 chrX 155270560 + 135495247 135495641 L1PA2 6032 - 1 395 74936 394 chain 3735 chrX 155270560 + 135498731 135498817 L1PB1 5432 + 5346 5427 211382 24 1 0 14 8 7 13 4 3 9 1 0 7 1 0 4 chain 61313 chrX 155270560 + 135503283 135504062 LTR12 884 + 0 884 52199 25 1 0 53 1 108 192 2 0 124 0 1 381 chain 7151 chrX 155270560 + 135514827 135514970 L1PB3 3668 - 54 186 176400 15 7 4 13 2 1 12 10 6 34 3 1 25 1 0 21 chain 556155 chrX 155270560 + 135522444 135528460 L1PA2 6032 - 17 6032 707 5759 1 0 256 chain 101897 chrX 155270560 + 135641256 135642745 L1MA2 4263 - 169 1647 36286 19 0 1 10 13 6 14 0 1 76 2 1 8 1 0 150 17 14 124 1 4 4 1 0 77 6 3 268 0 1 70 5 8 121 14 15 46 17 15 128 3 4 142 1 2 5 3 0 109 6 4 28 chain 26998 chrX 155270560 + 135642765 135643067 AluYc 301 + 0 300 96288 114 2 0 186 chain 6758 chrX 155270560 + 135653865 135653974 HY1 111 - 0 111 179260 30 9 7 23 4 8 43 chain 2665 chrX 155270560 + 135664712 135664789 MER5B 177 - 82 159 230822 14 29 30 5 1 0 28 chain 30293 chrX 155270560 + 135684414 135684743 L1PA2 6032 + 5701 6030 83950 329 chain 55006 chrX 155270560 + 135689500 135690250 MER4E1 777 - 9 777 55702 168 0 2 47 44 35 21 4 0 58 0 1 86 0 23 202 0 4 96 1 2 23 chain 3516 chrX 155270560 + 135696896 135696936 MER104 178 - 31 71 215136 40 chain 13236 chrX 155270560 + 135697455 135697650 MER30 238 + 0 207 147334 104 9 0 7 8 32 47 3 0 17 chain 15994 chrX 155270560 + 135713698 135713990 Tigger2 2703 + 2400 2703 138369 12 11 8 78 10 23 46 0 4 47 4 8 38 15 10 7 2 0 22 chain 3347 chrX 155270560 + 135747145 135747180 LTR67B 553 - 439 474 218101 35 chain 13233 chrX 155270560 + 135752207 135752384 MER2 342 - 6 184 147346 38 2 3 137 chain 5578 chrX 155270560 + 135753282 135753386 MIR 256 - 75 185 189296 4 0 1 12 24 29 64 chain 18273 chrX 155270560 + 135765517 135765728 AluSp 311 - 12 223 132143 211 chain 13680 chrX 155270560 + 135790337 135790529 L1PA8 5853 + 5656 5844 145670 22 2 1 13 1 0 48 2 1 19 1 0 84 chain 9409 chrX 155270560 + 135796443 135796558 L1PA6 6164 + 6041 6156 163508 115 chain 17582 chrX 155270560 + 135823447 135823678 Tigger2 2703 + 2399 2658 134049 156 3 31 72 chain 181033 chrX 155270560 + 135857263 135860275 L1PB1 5432 + 2869 5411 20896 39 31 33 656 0 1 4 1 0 13 0 1 15 19 25 73 4 6 564 23 3 318 394 10 47 0 1 52 5 7 16 0 1 39 8 5 101 4 0 199 59 16 22 1 0 6 3 2 14 18 12 50 2 1 16 1 0 41 11 10 8 3 0 14 9 0 13 2 0 9 1 0 14 3 1 23 1 0 22 1 0 12 1 0 7 chain 27243 chrX 155270560 + 135868630 135869006 THE1C 375 - 0 375 95455 26 1 0 39 0 2 114 12 12 59 10 8 115 chain 7326 chrX 155270560 + 135869006 135869113 L1MB8 1703 + 793 897 175254 46 1 0 29 3 1 28 chain 10403 chrX 155270560 + 135872557 135872708 L1P4 1494 - 84 232 158673 14 10 8 38 1 0 88 chain 11758 chrX 155270560 + 135880569 135880734 L1PA8 5853 + 5688 5853 153233 52 2 1 19 1 0 33 1 3 57 chain 41747 chrX 155270560 + 135887600 135888135 MER41A 554 + 0 539 66965 336 4 3 45 2 7 148 chain 19762 chrX 155270560 + 135892341 135892612 L1PA8 5853 - 0 264 127928 93 1 0 19 3 2 23 1 0 28 13 11 69 2 0 19 chain 12891 chrX 155270560 + 135899804 135900074 Tigger2 2703 - 0 280 148665 17 42 38 62 8 12 98 26 36 17 chain 21348 chrX 155270560 + 135918076 135918445 THE1D 372 + 0 372 122699 22 1 2 27 9 0 50 2 3 77 35 40 16 3 9 89 6 5 32 chain 8317 chrX 155270560 + 135970358 135970484 MLT1A0 366 + 30 150 169297 75 8 4 35 2 0 6 chain 30633 chrX 155270560 + 135980941 135981285 LTR14A 344 + 0 344 83151 344 chain 108171 chrX 155270560 + 136003407 136004915 LTR12C 1709 + 0 1709 34659 181 0 1 11 23 44 101 10 53 73 7 10 184 0 119 60 1 0 16 1 0 223 0 47 92 44 13 132 10 12 225 1 0 22 8 7 83 chain 29981 chrX 155270560 + 136031249 136031562 AluYb8 318 + 0 313 84865 313 chain 29532 chrX 155270560 + 136031959 136032269 AluYa5 310 - 0 310 86511 310 chain 534086 chrX 155270560 + 136059305 136065424 L1PA5 6144 - 18 6144 3695 530 0 6 303 13 5 93 0 1 840 0 4 425 0 1 183 0 5 115 1 0 66 8 0 818 0 4 437 0 4 1277 1 0 1009 chain 25856 chrX 155270560 + 136080571 136080911 THE1A 353 - 0 353 100628 137 0 3 13 1 0 87 9 8 39 0 12 54 chain 180367 chrX 155270560 + 136081509 136083820 SVA_D 2077 - 0 2019 20957 18 2 0 658 4 0 13 74 0 168 1 0 91 49 0 45 50 0 41 49 0 96 11 0 35 2 0 3 2 0 21 48 0 830 chain 6198 chrX 155270560 + 136082204 136082278 SVA_D 2077 - 918 992 82238 74 chain 2768 chrX 155270560 + 136082551 136082587 SVA_D 2077 - 609 645 117553 36 chain 3845 chrX 155270560 + 136082632 136082682 SVA_D 2077 - 690 739 117553 40 1 0 9 chain 2845 chrX 155270560 + 136082734 136082771 SVA_D 2077 - 820 857 117553 37 chain 22786 chrX 155270560 + 136087078 136087415 THE1C 375 - 29 375 116654 52 5 7 57 1 4 31 14 13 43 0 4 112 1 2 21 chain 256998 chrX 155270560 + 136087599 136090775 L1PA7 6471 + 3241 6469 15883 124 0 4 107 0 2 6 3 1 12 1 0 6 1 0 69 0 5 430 1 5 336 8 28 282 8 20 233 13 8 276 0 4 79 6 7 32 3 4 281 0 4 10 1 0 51 0 2 14 0 4 11 0 1 161 0 1 446 17 16 136 2 0 10 chain 14968 chrX 155270560 + 136120650 136120809 L1PA4 6152 + 5984 6143 141421 159 chain 553809 chrX 155270560 + 136156884 136163028 L1PA3long 6157 - 0 6152 971 778 0 1 360 0 1 1329 0 1 990 1 0 873 1 4 582 0 1 166 0 2 1064 chain 7780 chrX 155270560 + 136168734 136168824 L1PA5 6144 - 0 90 172415 90 chain 6393 chrX 155270560 + 136168827 136168902 L1PA5 6144 + 6031 6106 182077 75 chain 86984 chrX 155270560 + 136185336 136186385 L1PA7 6471 - 12 1064 40790 37 0 4 286 0 1 428 2 1 239 6 5 51 chain 27214 chrX 155270560 + 136190202 136190600 L1PA8 5853 + 5447 5846 95546 12 0 8 97 1 0 44 2 0 74 8 6 37 17 16 19 1 0 86 chain 163446 chrX 155270560 + 136193562 136195377 L1PA3long 6157 - 0 1824 22885 745 0 10 168 0 1 4 1 0 352 1 0 544 chain 5302 chrX 155270560 + 136204245 136204309 L1PB4 2604 + 2484 2548 191999 64 chain 539648 chrX 155270560 + 136204577 136210698 L1PA4 6152 + 0 6143 2869 532 4 0 2641 1 0 335 0 1 444 0 1 91 0 22 387 0 3 860 11 9 50 1 3 764 chain 468605 chrX 155270560 + 136212111 136217779 L1PA7 6471 + 816 6470 8089 170 6 7 90 0 1 154 0 1 4 10 9 10 0 1 4 1 0 89 0 1 1088 10 5 200 15 6 526 0 2 365 0 4 191 0 4 81 33 0 382 0 11 265 0 1 119 0 2 67 0 4 726 4 5 905 1 2 152 chain 17497 chrX 155270560 + 136221513 136221708 L1PA4 6152 + 5954 6149 133757 195 chain 32701 chrX 155270560 + 136221708 136222078 L1PA5 6144 + 5761 6131 79684 75 1 0 165 0 1 129 chain 28691 chrX 155270560 + 136223948 136224258 AluYa5 310 - 0 310 90361 310 chain 3502 chrX 155270560 + 136250230 136250267 MLT2A1 477 + 440 477 215346 37 chain 18255 chrX 155270560 + 136286705 136286936 THE1D-int 1627 - 1395 1627 132187 195 1 0 22 1 3 12 chain 38542 chrX 155270560 + 136288783 136289250 L1PA7 6471 - 6 476 71376 149 0 1 97 4 6 217 chain 13135 chrX 155270560 + 136290104 136290344 L1MA7 2200 + 1875 2087 147704 74 2 0 18 40 25 58 11 0 37 chain 71388 chrX 155270560 + 136290441 136291226 L1PA5 6144 + 5359 6144 47751 785 chain 42084 chrX 155270560 + 136294941 136295478 MER41A 554 + 14 554 66513 154 0 1 151 2 1 83 0 2 24 0 1 123 chain 9999 chrX 155270560 + 136296135 136296261 MER57A1 433 + 301 427 160585 126 chain 138775 chrX 155270560 + 136299801 136301640 MER57-int 2662 + 526 2394 26355 253 18 23 68 0 8 97 8 9 100 1 0 20 1 5 260 0 2 28 1 0 202 0 16 292 3 0 80 3 4 340 3 0 61 chain 33189 chrX 155270560 + 136301943 136302375 MER57A1 433 + 0 433 78914 280 3 4 149 chain 62711 chrX 155270560 + 136428592 136429569 L1PB1 5432 - 19 978 51585 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 19 8 4 1 0 16 1 0 43 1 0 16 2 1 53 27 20 13 1 0 17 12 14 24 15 31 294 1 0 4 0 1 121 4 0 82 1 0 92 chain 55486 chrX 155270560 + 136429600 136430338 L1PB 1623 + 814 1524 55422 483 29 12 137 1 0 7 2 1 30 1 0 5 3 0 9 8 4 14 1 0 8 chain 2857 chrX 155270560 + 136461570 136461601 LTR68 653 + 1 32 227702 31 chain 8529 chrX 155270560 + 136465946 136466217 L1MB3 1562 + 76 340 168135 6 5 0 5 1 0 59 1 0 27 121 121 46 chain 34867 chrX 155270560 + 136472572 136472979 L1PA7 6471 + 5552 5958 76386 70 1 0 336 chain 43973 chrX 155270560 + 136472982 136473480 L1PA7 6471 + 5959 6458 64231 372 0 1 126 chain 24507 chrX 155270560 + 136476611 136476950 THE1B 368 - 12 368 107506 36 15 14 107 1 5 20 1 0 119 0 15 40 chain 526762 chrX 155270560 + 136515244 136522135 L1PA7 6471 + 1 6468 4522 212 1 0 82 5 7 79 5 9 21 0 1 183 13 10 146 0 1 290 1 13 342 0 3 448 0 73 710 0 1 898 0 2 343 0 18 116 1 0 341 0 3 212 329 0 179 0 1 184 232 0 106 0 7 300 7 6 75 0 2 196 1 0 641 0 1 72 17 32 92 2 0 9 chain 3087 chrX 155270560 + 136538684 136539034 Charlie2b 853 - 94 487 223159 33 293 336 24 chain 12522 chrX 155270560 + 136547346 136547552 MER47A 366 - 70 288 150155 28 21 37 125 8 4 24 chain 83476 chrX 155270560 + 136550431 136551731 L1PA6 6164 - 2 990 42127 8 2 0 371 309 0 182 1 0 427 chain 88832 chrX 155270560 + 136570104 136571131 L1PA5 6144 + 5110 6144 40069 644 0 1 38 0 5 155 2 3 188 chain 12687 chrX 155270560 + 136573188 136573571 MLT1B 390 + 0 390 149498 22 155 157 7 6 0 26 30 41 137 chain 29818 chrX 155270560 + 136574997 136575312 AluYb8 318 - 3 318 85386 315 chain 213685 chrX 155270560 + 136591876 136594431 L1PA7 6471 + 3732 6285 18246 755 1 2 577 0 1 318 8 1 41 0 1 40 0 4 148 2 1 660 1 0 4 chain 15132 chrX 155270560 + 136594431 136594612 L1PA7 6471 + 6286 6467 140967 181 chain 24794 chrX 155270560 + 136662465 136662761 AluSp 311 - 5 301 105922 296 chain 76556 chrX 155270560 + 136687531 136691025 L1MA2 4263 + 1479 4111 45184 6 2 0 43 12 11 89 6 9 247 10 9 77 29 0 284 2300 1479 76 3 0 147 11 9 93 7 0 18 0 2 27 1 0 6 chain 29963 chrX 155270560 + 136714891 136715270 MLT2A1 477 - 92 477 84928 189 2 1 22 0 4 28 1 2 89 0 2 48 chain 19182 chrX 155270560 + 136722833 136723072 Tigger3a 397 - 20 259 129581 239 chain 6136 chrX 155270560 + 136723255 136723330 7SK 245 - 170 245 184108 75 chain 4345 chrX 155270560 + 136737376 136737450 MIRb 242 - 125 195 202653 7 2 0 40 5 3 20 chain 23864 chrX 155270560 + 136747745 136748009 L1PA2 6032 + 5762 6026 111109 264 chain 560857 chrX 155270560 + 136754276 136760418 L1PA3long 6157 + 15 6157 317 6142 chain 3321 chrX 155270560 + 136771408 136771447 MLT2B3 573 - 534 573 218559 39 chain 12339 chrX 155270560 + 136810487 136810677 L1MA2 4263 + 3921 4102 150861 37 9 7 93 7 0 44 chain 11560 chrX 155270560 + 136819604 136819815 MSTB 430 + 202 416 154066 5 3 0 38 23 24 38 8 13 37 1 0 4 0 1 54 chain 6002 chrX 155270560 + 136843386 136843475 MER5A1 166 - 1 117 185226 53 6 33 30 chain 394674 chrX 155270560 + 136847096 136851614 L1PA5 6144 - 3 6144 10293 102 0 1 2792 0 1618 350 0 1 47 0 1 257 0 1 664 0 1 306 chain 25902 chrX 155270560 + 136858910 136859209 AluSp 311 + 0 298 100424 10 1 0 288 chain 75111 chrX 155270560 + 136867935 136868768 L1PA3long 6157 + 5308 6149 45962 590 0 1 103 1 8 139 chain 520477 chrX 155270560 + 136873903 136881753 L1PA7 6471 + 9 6469 5107 188 0 1 5 1 0 249 0 4 6 4 0 254 0 1 15 1 0 19 0 1 23 0 1 85 0 3 346 4 0 490 0 71 62 0 2 298 16 2 45 0 1 339 0 2 464 1 0 411 316 0 87 2 1 5 0 2 11 10 8 886 0 2 91 16 7 288 0 1 278 0 2 485 0 4 47 0 1 19 2 0 226 0 1 27 0 11 374 1140 0 59 3 0 123 15 12 14 chain 90417 chrX 155270560 + 136880406 136881539 MER11A 1151 - 0 1150 39503 289 3 0 26 7 36 209 5 6 196 0 1 60 0 2 25 14 9 114 8 0 177 chain 21083 chrX 155270560 + 136889721 136890031 AluSg 306 + 12 306 123610 23 14 0 169 8 9 83 3 0 10 chain 2943 chrX 155270560 + 136890648 136890680 MLT1F1 559 - 454 486 226268 32 chain 20824 chrX 155270560 + 136906528 136906798 MER1A 529 - 9 274 124525 55 16 11 199 chain 24564 chrX 155270560 + 136913258 136913633 L1MA2 4263 + 1915 2268 107173 55 1 0 142 8 12 98 26 0 11 3 4 31 chain 303895 chrX 155270560 + 136914098 136918477 L1PB1 5432 - 10 4088 13248 18 1 0 12 1 0 22 1 0 24 2 0 6 8 14 15 20 11 4 1 0 15 1 0 62 1 0 51 2 0 9 2 0 3 2 0 10 1 0 9 1 0 22 13 0 12 3 0 205 8 0 273 2 0 399 6 7 249 319 0 8 1 0 68 0 16 145 4 7 394 0 1 496 1 0 74 1 2 255 4 5 90 21 22 66 4 9 192 1 3 269 0 4 427 0 30 43 chain 27610 chrX 155270560 + 136918477 136918778 AluYg6 310 + 0 301 94323 301 chain 80533 chrX 155270560 + 136925881 136926995 L1PA11 4918 - 351 1454 43377 13 1 0 15 48 35 16 1 0 13 2 0 81 2 1 8 0 3 50 2 0 10 5 9 98 5 6 153 0 1 465 1 0 55 0 1 70 chain 71396 chrX 155270560 + 136965813 136966789 L1PA6 6164 + 5116 6152 47748 146 3 4 37 0 3 7 2 0 5 16 20 129 0 52 430 6 8 45 1 6 6 5 0 138 chain 115618 chrX 155270560 + 136987790 136989649 THE1C-int 1605 + 0 1599 32582 11 7 7 92 0 54 165 0 6 110 0 7 58 322 0 48 5 6 194 6 0 48 0 1 139 6 7 406 1 0 214 4 3 23 chain 67513 chrX 155270560 + 136995694 136996467 LTR17 781 - 9 781 49438 158 1 0 286 0 1 20 10 0 177 0 9 121 chain 24234 chrX 155270560 + 137013949 137014234 AluY 311 + 28 311 109026 104 0 1 112 3 0 66 chain 27985 chrX 155270560 + 137015253 137016247 L1PB1 5432 - 5 604 93053 5 2 0 17 5 4 10 1 0 21 1 0 24 2 0 14 8 5 19 29 16 11 1 0 23 9 10 12 1 0 15 3 2 41 22 25 9 2 1 9 5 4 16 13 11 93 418 49 133 chain 66522 chrX 155270560 + 137016572 137017409 THE1B-int 1605 + 0 867 49856 15 0 2 90 0 3 316 0 25 416 chain 28739 chrX 155270560 + 137017751 137018192 L1PB 1623 + 1116 1525 90173 190 24 1 103 0 2 34 1 0 7 2 1 30 1 0 4 3 0 13 5 1 13 1 0 10 chain 11170 chrX 155270560 + 137019326 137019493 MSTB-int 1649 + 14 191 155556 5 0 1 4 1 0 39 17 27 101 chain 12516 chrX 155270560 + 137020323 137020485 MSTB 430 + 254 415 150175 4 1 0 157 chain 518388 chrX 155270560 + 137041843 137047974 L1PA6 6164 + 0 6149 5337 410 1 0 69 32 31 99 0 1 177 0 17 904 0 1 625 5 0 146 0 1 101 0 4 426 0 1 176 0 1 2126 1 0 833 chain 8785 chrX 155270560 + 137050014 137050116 L1PA3long 6157 - 0 100 166747 5 2 0 95 chain 508415 chrX 155270560 + 137053140 137059271 L1PA6 6164 + 0 6156 6290 114 0 1 4 1 0 127 11 16 187 19 0 85 0 1 34 1 0 218 0 17 121 0 6 30 5 4 279 0 1 173 0 5 29 0 1 879 1 2 810 1 0 45 0 1 115 0 1 1872 0 1 129 0 1 447 0 9 109 4 0 127 0 1 154 chain 40533 chrX 155270560 + 137108852 137109403 MER41A 554 + 0 554 68545 92 0 1 225 0 1 21 24 20 71 5 11 4 1 0 108 chain 24934 chrX 155270560 + 137117910 137118198 AluY 311 + 0 305 105141 52 0 16 64 0 1 172 chain 37774 chrX 155270560 + 137132974 137133458 L1PA15 4387 + 1309 1794 72452 255 0 1 229 chain 89237 chrX 155270560 + 137144279 137145226 L1HS 6032 - 1248 2195 39833 947 chain 118771 chrX 155270560 + 137145226 137146488 L1HS 6032 + 4770 6032 31504 1262 chain 520920 chrX 155270560 + 137155601 137161711 L1PA5 6144 + 0 6138 5066 135 7 33 494 0 13 494 9 0 203 0 1 940 2 1 82 1 0 621 3 4 155 1 0 659 2 0 119 0 1 324 1 0 286 1 3 602 7 5 630 0 1 332 chain 392985 chrX 155270560 + 137169188 137174384 L1PB1 5432 + 77 5319 10360 137 4 16 59 1 2 115 2 1 137 6 1 217 2 0 633 0 1 7 6 0 102 0 2 51 6 7 81 6 5 214 0 1 60 6 1 162 8 7 53 1 2 115 0 3 226 16 7 68 25 25 409 3 4 192 2 5 86 1 0 302 5 9 238 0 1 132 6 11 13 5 6 624 6 0 272 0 2 195 0 62 9 2 0 41 1 0 5 26 25 42 1 0 16 14 1 22 chain 63946 chrX 155270560 + 137179455 137180161 L1PA3long 6157 + 5037 5744 51029 287 1 2 418 chain 20661 chrX 155270560 + 137180177 137180454 THE1C 375 - 76 356 125102 115 1 0 45 5 9 111 chain 503942 chrX 155270560 + 137187462 137193599 L1PA6 6164 + 0 6160 6609 141 0 12 46 0 1 291 1 2 18 1 0 421 1 26 217 45 17 771 0 1 171 0 1 189 3 0 74 0 4 634 3 4 148 0 1 1162 10 14 1098 5 6 384 0 1 149 5 13 6 7 0 26 18 19 92 chain 10369 chrX 155270560 + 137201737 137201855 L1PA4 6152 - 0 118 158832 118 chain 15612 chrX 155270560 + 137205540 137205736 L1MA1 4479 - 2599 2792 139541 102 0 1 49 4 0 41 chain 10239 chrX 155270560 + 137210039 137210196 L1P4a 3072 - 2870 3026 159421 83 6 5 20 4 6 21 2 0 21 chain 4644 chrX 155270560 + 137221286 137221339 MER57B1 401 - 347 401 199139 14 0 1 39 chain 4354 chrX 155270560 + 137224078 137224129 MER34A 573 + 10 61 202537 51 chain 70972 chrX 155270560 + 137224346 137225188 L1PA6 6164 - 3 839 47941 7 2 0 692 6 2 135 chain 30091 chrX 155270560 + 137237199 137237517 AluYb8 318 - 0 318 84522 318 chain 52198 chrX 155270560 + 137241484 137242085 L1PA5 6144 - 1 600 57502 102 0 1 401 3 0 95 chain 19284 chrX 155270560 + 137242089 137242303 L1PA5 6144 + 5334 5548 129275 214 chain 25354 chrX 155270560 + 137278102 137278394 AluSp 311 - 10 302 102925 292 chain 5155 chrX 155270560 + 137280369 137280429 L1M3 994 - 634 694 193490 60 chain 513273 chrX 155270560 + 137280470 137286584 L1PA5 6144 + 0 6138 5855 62 2 3 55 0 14 449 0 3 14 5 9 117 1 0 186 0 3 48 0 1 205 9 0 353 1 0 4 0 1 216 1 2 17 0 1 191 0 1 4 1 0 565 0 2 643 3 1 168 0 2 313 0 1 28 1 0 88 0 1 1523 1 0 95 0 1 111 0 1 397 1 3 236 chain 42953 chrX 155270560 + 137291006 137291561 MLT2A2 560 - 0 554 65474 108 14 11 61 8 9 166 0 1 198 chain 24653 chrX 155270560 + 137291568 137292274 HERVL-int 5654 - 0 382 106708 103 48 36 77 0 1 4 4 0 15 309 0 146 chain 51237 chrX 155270560 + 137298427 137299021 L1PA7 6471 - 12 610 58163 232 6 10 356 chain 29564 chrX 155270560 + 137299021 137299379 L1PA7 6471 + 5485 5842 86359 136 1 0 221 chain 514047 chrX 155270560 + 137312899 137319042 L1PA6 6164 + 0 6160 5772 234 17 17 118 1 9 17 9 8 107 1 0 232 20 19 26 0 17 982 0 1 62 0 1 474 5 1 939 0 3 2344 6 0 287 0 1 134 0 1 120 2 0 6 chain 16473 chrX 155270560 + 137324177 137324374 L1PB1 5432 + 4430 4627 136998 197 chain 14426 chrX 155270560 + 137324376 137324535 L1PB1 5432 + 4627 4788 143131 78 0 2 81 chain 28507 chrX 155270560 + 137324572 137325175 L1PB1 5432 + 4815 5281 91162 288 1 2 9 133 0 24 56 53 26 5 4 16 6 5 39 chain 5892 chrX 155270560 + 137325242 137325333 L1PB1 5432 + 5332 5418 186252 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 17430 chrX 155270560 + 137325504 137325698 L1PA4 6152 + 5949 6143 134434 194 chain 22244 chrX 155270560 + 137340819 137341218 LTR7 482 + 0 482 119148 69 6 95 21 51 0 15 1 11 13 8 40 25 0 1 129 12 14 49 chain 289062 chrX 155270560 + 137341220 137345000 HERVH-int 3825 + 0 3825 14080 469 1 0 66 6 1 9 0 1 24 1 0 10 1 0 19 1 2 5 0 50 41 1 0 21 209 0 60 0 1 447 15 0 187 1 0 17 9 0 28 0 2 10 1 0 309 0 1 176 6 21 98 0 1 767 0 4 223 9 11 39 8 218 130 2 1 129 0 2 225 chain 2228 chrX 155270560 + 137341920 137342016 HERVH-int 3825 + 640 714 203617 15 22 1 40 2 1 17 chain 26668 chrX 155270560 + 137346529 137346913 LTR7 482 - 13 482 97429 102 1 2 39 1 11 17 0 35 31 7 8 109 8 46 69 chain 271796 chrX 155270560 + 137348172 137351789 HERVH-int 3825 - 0 3825 15094 225 0 2 152 3 0 7 0 3 98 150 362 118 1 2 5 1 0 709 4 7 110 0 10 299 4 31 906 1 0 49 2 1 5 0 1 6 107 0 20 1 0 13 0 39 14 11 39 12 1 0 9 2 1 24 0 1 4 1 0 11 1 0 158 0 1 38 1 0 293 2 1 39 chain 56930 chrX 155270560 + 137361173 137361836 L1PA6 6164 - 2 665 54574 663 chain 112402 chrX 155270560 + 137364213 137365597 SVA_B 1603 - 0 1552 33561 149 0 6 451 0 40 37 4 0 31 1 0 66 40 0 97 40 0 61 0 37 252 3 0 42 0 173 110 chain 77049 chrX 155270560 + 137377939 137378908 LTR5_Hs 974 - 0 974 44943 103 22 20 20 0 7 168 1 0 370 0 1 285 chain 142692 chrX 155270560 + 137382816 137384397 L1PA3long 6157 - 0 1589 25699 138 0 7 1190 5 0 7 0 6 241 chain 26198 chrX 155270560 + 137384972 137385260 L1PA5 6144 - 12 300 99211 288 chain 24778 chrX 155270560 + 137386956 137387298 THE1B 368 - 0 368 106011 75 1 0 4 0 1 86 2 0 36 1 0 72 3 17 13 5 20 44 chain 8472 chrX 155270560 + 137394975 137395114 MLT2D 439 - 297 437 168444 20 6 7 13 8 7 82 0 1 10 chain 288364 chrX 155270560 + 137398574 137402560 L1PB1 5432 - 5 3925 14134 5 2 0 18 1 0 12 1 0 22 1 0 18 31 26 17 9 0 9 2 0 5 2 1 12 1 0 22 3 4 19 1 0 16 2 1 11 0 1 40 0 2 5 11 3 14 1 0 5 0 9 12 16 0 10 0 14 170 0 1 283 24 11 118 14 7 16 3 1 318 1 0 177 0 1 250 35 19 235 1 0 77 0 1 567 2 0 16 1 0 170 13 9 60 0 5 82 1 0 14 5 1 402 11 12 564 chain 82475 chrX 155270560 + 137415645 137416613 LTR5_Hs 974 + 0 974 42554 285 0 1 286 1 0 235 0 1 14 5 12 36 2 0 104 chain 98876 chrX 155270560 + 137423890 137424972 L1PA3long 6157 - 5 1088 37058 851 0 1 231 chain 46232 chrX 155270560 + 137424976 137425484 L1PA3long 6157 + 4569 5077 61825 508 chain 10402 chrX 155270560 + 137450336 137450468 L1MA3 4352 + 3927 4059 158680 132 chain 120375 chrX 155270560 + 137474771 137476247 L1PA7 6471 + 4966 6467 30914 95 0 4 202 11 17 14 0 1 148 0 8 167 0 2 99 0 1 190 6 0 79 0 1 69 0 9 132 1 2 109 1 0 86 1 0 66 chain 4302 chrX 155270560 + 137483891 137483944 L1MA8 2339 + 2010 2063 203188 53 chain 17051 chrX 155270560 + 137500009 137500222 THE1B-int 1605 + 262 545 135457 11 0 6 118 0 64 84 chain 535971 chrX 155270560 + 137538012 137544146 L1PA5 6144 + 3 6143 3448 621 1 3 344 0 1 967 1 0 1991 1 2 1206 0 1 155 0 1 377 7 1 7 0 6 124 1 2 331 chain 403567 chrX 155270560 + 137545756 137551501 L1PB1 5432 + 54 5430 9982 45 5 7 304 6 7 135 15 12 44 0 4 345 4 0 115 12 6 68 0 1 255 6 0 5 6 0 147 1 20 80 304 0 243 15 0 590 28 10 27 0 1 27 8 9 22 0 5 246 0 3 5 2 0 613 5 0 42 0 1 35 0 1 187 24 16 222 1 0 406 7 1 61 9 10 45 30 35 280 2 1 302 31 34 12 1 0 12 4 0 9 2 0 49 4 3 18 1 0 43 1 0 16 3 0 12 9 0 20 12 9 9 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 61972 chrX 155270560 + 137561403 137562122 L1PA6 6164 - 2 721 51911 719 chain 4309 chrX 155270560 + 137583446 137583503 MER53 195 - 98 155 203107 57 chain 135783 chrX 155270560 + 137587086 137588567 L1PA3long 6157 - 1 1482 26883 1481 chain 19182 chrX 155270560 + 137590288 137590510 L1PA8A 6298 - 1015 1239 129580 18 0 1 117 0 1 87 chain 81011 chrX 155270560 + 137590519 137591511 L1PA8A 6298 + 5292 6291 43190 51 0 5 141 2 1 89 8 9 391 0 1 290 0 1 20 chain 10082 chrX 155270560 + 137599707 137599825 L1PA7 6471 - 4 123 160168 114 0 1 4 chain 23434 chrX 155270560 + 137599825 137600093 L1P1 4361 + 3553 3821 113451 268 chain 43994 chrX 155270560 + 137613274 137613774 L1PA4 6152 + 5640 6143 64212 177 0 1 15 0 1 40 0 1 268 chain 39691 chrX 155270560 + 137626197 137626648 L1PA2 6032 - 0 450 69764 23 1 0 118 0 7 8 7 0 294 chain 30602 chrX 155270560 + 137643572 137643993 HSMAR1 1287 + 0 439 83198 45 0 1 48 0 1 26 5 7 35 0 11 116 0 1 10 12 14 124 chain 53386 chrX 155270560 + 137685161 137685792 L1PA7 6471 - 7 638 56770 631 chain 20864 chrX 155270560 + 137687061 137687343 AluSp 311 + 9 286 124411 38 22 17 222 chain 8418 chrX 155270560 + 137689162 137689300 MER51B 395 + 0 389 168737 40 7 26 34 8 240 49 chain 11422 chrX 155270560 + 137701527 137701663 L1PA7 6471 + 6334 6470 154595 136 chain 4865 chrX 155270560 + 137711876 137712035 MER5A 189 + 0 165 196633 16 12 16 36 29 30 14 27 28 25 chain 26911 chrX 155270560 + 137716806 137717189 L1PB2 3958 + 3453 3838 96592 91 2 1 37 0 1 35 1 0 53 0 6 4 1 0 72 3 1 21 1 0 55 0 1 7 chain 56972 chrX 155270560 + 137741496 137742234 L1PA8 5853 + 5121 5853 54549 440 2 1 48 11 9 59 2 1 8 5 4 49 2 1 19 1 0 57 2 3 33 chain 11795 chrX 155270560 + 137742637 137742840 L1MA3 4352 - 7 201 153065 15 6 2 13 1 0 24 11 9 22 2 0 24 4 0 15 0 4 66 chain 103817 chrX 155270560 + 137759355 137760538 L1PA3long 6157 + 5013 6157 35765 287 1 0 698 38 0 159 chain 14542 chrX 155270560 + 137812338 137812507 L1PA5 6144 + 5974 6143 142745 169 chain 16506 chrX 155270560 + 137825232 137825618 L1MC1 2226 + 1755 2120 136897 87 15 12 24 14 11 28 12 14 42 14 13 6 2 0 55 54 42 11 6 4 16 chain 12140 chrX 155270560 + 137860207 137860337 L1PA3long 6157 + 4 134 151656 130 chain 541078 chrX 155270560 + 137860469 137866487 L1PA3long 6157 + 4 6157 2655 649 0 1 87 0 1 26 8 136 296 0 1 1496 1 0 762 0 9 725 4 0 1964 chain 17840 chrX 155270560 + 137869725 137869964 L1PA8 5853 - 8 243 133274 84 2 1 19 2 1 52 2 1 8 1 0 69 chain 457324 chrX 155270560 + 137878229 137884077 L1PA8 5853 - 0 5803 8496 93 1 0 19 2 1 50 1 0 82 2 0 46 1 0 47 1 0 283 0 12 125 0 1 83 0 2 434 14 12 213 1 2 5 1 0 3 4 0 42 0 1 79 4 3 449 0 1 106 0 1 59 2 1 197 5 2 408 0 2 24 1 4 78 0 1 670 0 2 36 26 6 108 0 1 90 13 17 763 9 1 162 0 2 109 1 3 240 2 1 45 0 1 180 11 9 5 0 2 120 4 8 10 0 1 182 10 19 7 46 0 10 2 0 22 chain 373291 chrX 155270560 + 137889502 137893768 L1PA5 6144 + 1876 6141 10980 505 0 3 817 0 1 17 14 10 1006 0 3 1897 4 0 6 chain 42011 chrX 155270560 + 137894904 137895424 L1PA8A 6298 - 7 547 66607 21 8 0 84 0 1 255 0 27 152 chain 7704 chrX 155270560 + 137897857 137897947 L1PA2 6032 + 5944 6032 172907 75 2 0 13 chain 14883 chrX 155270560 + 137898814 137899039 MER30 238 + 0 238 141680 100 2 0 6 4 0 7 4 27 41 1 0 9 3 0 48 chain 12638 chrX 155270560 + 137928720 137928871 MSTA 426 + 254 405 149691 151 chain 62179 chrX 155270560 + 137933665 137934457 L1PA10 4194 + 3371 4161 51814 531 0 1 21 3 2 5 0 2 149 1 0 19 3 4 11 4 1 33 1 0 11 chain 33151 chrX 155270560 + 137955933 137956313 L1PA5 6144 + 5752 6131 78986 237 1 0 142 chain 15837 chrX 155270560 + 137959174 137959386 L1PA8A 6298 + 6078 6288 138836 99 3 1 4 1 0 85 0 1 20 chain 83826 chrX 155270560 + 137960315 137961250 L1PA4 6152 - 1 941 41973 581 0 1 197 1 0 117 0 5 39 chain 18582 chrX 155270560 + 137961691 137961899 L1PA7 6471 - 20 228 131283 208 chain 72355 chrX 155270560 + 137961901 137962758 L1PA7 6471 + 5368 6225 47319 74 0 1 178 1 0 604 chain 28588 chrX 155270560 + 137973767 137974164 MLT2A1 477 + 1 398 90794 141 3 4 23 0 4 52 0 8 143 0 3 8 16 0 11 chain 69388 chrX 155270560 + 137976391 137977205 L1P1 4361 + 3054 3864 48648 123 2 0 333 3 0 260 1 2 92 chain 23593 chrX 155270560 + 137990228 137990529 AluYk4 311 - 8 302 112619 171 8 0 79 7 8 36 chain 78496 chrX 155270560 + 138021881 138023100 L1PA15 4387 - 30 1217 44273 26 5 0 16 3 1 44 6 3 34 30 25 20 7 6 51 1 0 23 9 8 168 1 0 30 16 14 23 11 0 33 5 0 7 0 2 10 2 0 545 15 20 59 2 1 4 0 1 13 chain 148867 chrX 155270560 + 138034061 138035749 L1PA4 6152 + 4461 6152 24775 472 0 1 1136 1 3 79 chain 343848 chrX 155270560 + 138039602 138043751 L1PA5 6144 - 1418 5593 11784 90 0 5 286 0 4 7 14 2 644 0 1 5 0 4 753 6 7 1123 0 1 159 0 12 144 1 2 307 9 0 90 17 18 108 25 0 131 46 88 184 chain 108878 chrX 155270560 + 138043752 138045013 L1PA5 6144 + 4730 5989 34469 284 1 0 888 1 0 87 chain 12682 chrX 155270560 + 138045021 138045167 L1PA5 6144 + 5998 6144 149518 146 chain 11078 chrX 155270560 + 138048148 138048281 MLT2A2 560 + 0 133 155903 133 chain 7109 chrX 155270560 + 138057625 138057704 L1PA5 6144 + 6065 6144 176694 79 chain 9599 chrX 155270560 + 138058432 138058633 L1PB3 3668 + 3415 3590 162601 62 21 5 18 8 5 23 3 1 37 7 3 13 1 0 8 chain 27739 chrX 155270560 + 138072585 138072952 THE1B 368 - 0 368 93908 75 1 0 119 8 7 125 0 5 18 2 0 19 chain 485500 chrX 155270560 + 138078292 138084512 L1PA7 6471 + 72 6467 7540 59 81 80 27 5 7 84 11 181 215 0 10 18 14 12 491 0 1 35 9 8 251 0 1 455 2 0 127 1 3 334 8 9 25 1 2 124 3 1 1421 0 1 754 0 2 145 1 0 29 0 1 356 1 0 280 1 0 10 18 15 87 0 1 403 1 0 170 0 7 3 6 0 96 1 0 46 3 0 8 chain 133464 chrX 155270560 + 138085203 138086752 LTR12C 1709 - 0 1709 27330 481 0 4 107 3 1 5 1 0 115 0 159 837 chain 16081 chrX 155270560 + 138095699 138096029 L1PB1 5432 + 5118 5421 138111 20 1 0 8 1 0 12 16 10 51 7 6 12 1 0 29 16 15 21 15 7 15 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 17 chain 26266 chrX 155270560 + 138118792 138119149 THE1B 368 - 0 368 98951 176 2 0 17 1 3 40 13 24 108 chain 8292 chrX 155270560 + 138126725 138126820 MSTA-int 1630 - 8 103 169453 95 chain 138767 chrX 155270560 + 138135041 138137467 L1PB1 5432 - 14 2082 26357 14 1 0 13 1 0 21 1 0 10 2 1 12 25 20 16 9 0 15 3 0 16 2 1 42 1 0 16 2 1 35 0 7 11 2 0 9 6 2 9 1 0 13 1 0 20 60 155 153 0 2 6 7 2 91 0 2 71 11 7 126 9 8 302 0 1 69 317 0 127 1 0 32 2 0 185 48 0 38 71 12 193 0 4 178 chain 24016 chrX 155270560 + 138146445 138146697 AluYb8 318 - 0 252 110238 252 chain 42251 chrX 155270560 + 138146728 138147265 L1P2 5180 - 3419 3959 66333 175 0 3 362 chain 136207 chrX 155270560 + 138147277 138148994 L1PA7 6471 + 2266 4014 26797 375 24 3 12 1 4 216 0 2 606 1 2 5 0 14 118 0 1 111 0 29 69 9 11 170 chain 198627 chrX 155270560 + 138148999 138153302 L1PA7 6471 + 4014 6467 19310 288 7 6 408 2 0 5 0 2 224 1847 0 583 0 2 89 5 4 57 16 18 389 9 0 228 1 9 135 4 0 6 chain 96764 chrX 155270560 + 138149941 138151000 L1PA2 6032 - 796 1855 37629 1059 chain 70781 chrX 155270560 + 138151000 138151780 L1PA2 6032 + 5244 6022 47492 775 2 0 3 chain 9248 chrX 155270560 + 138154470 138154665 MLT1B 390 + 198 390 164321 6 4 0 16 59 60 110 chain 18404 chrX 155270560 + 138157990 138158183 AluYb8 318 - 5 198 131772 193 chain 2853 chrX 155270560 + 138180434 138180466 L1P5 443 - 289 321 227804 32 chain 105075 chrX 155270560 + 138228099 138229281 L1PA5 6144 + 4951 6135 35483 600 0 1 442 0 1 140 chain 406813 chrX 155270560 + 138240754 138245705 L1PA7 6471 + 1570 6461 9881 304 2 1 766 21 11 838 8 7 70 4 0 269 0 1 167 7 6 200 0 3 192 4 7 7 2 0 15 61 3 11 0 1 182 3 1 116 0 1 66 1 5 160 1 0 156 0 1 186 3 10 288 1 0 840 chain 23266 chrX 155270560 + 138248288 138248651 THE1C 375 + 0 375 114357 40 0 5 93 12 16 22 0 2 8 0 1 6 26 20 120 0 7 10 1 0 25 chain 347313 chrX 155270560 + 138255569 138259781 L1PA7 6471 - 7 4201 11686 5 3 0 417 0 1 425 2 1 282 3 10 768 6 1 147 1 2 113 0 1 281 7 6 518 10 2 52 7 0 300 0 7 484 10 0 371 chain 3576 chrX 155270560 + 138261308 138261358 MADE1 96 + 46 96 214033 4 1 0 19 0 1 26 chain 3068 chrX 155270560 + 138293990 138294064 LTR16A 446 + 260 335 223598 13 28 29 33 chain 19464 chrX 155270560 + 138297721 138297965 L1PA8 5853 - 0 241 128772 93 1 0 19 2 1 61 1 0 67 chain 342859 chrX 155270560 + 138320992 138325758 L1PA11 4918 + 8 4578 11812 7 1 0 29 2 0 36 8 5 30 1 0 13 2 0 51 2 1 33 2 0 5 2 1 402 0 18 573 0 4 415 0 1 51 20 22 108 2 1 146 0 1 98 1 0 89 2 0 91 200 0 476 4 6 31 0 1 196 6 7 231 0 1 173 10 13 30 17 27 342 6 0 7 0 1 144 1 0 4 5 6 107 0 1 291 0 3 56 2 1 20 2 0 61 2 0 13 2 1 19 4 0 9 31 22 15 1 0 13 2 0 11 chain 9625 chrX 155270560 + 138323278 138323408 L1PA11 4918 + 2104 2233 162469 73 0 1 24 1 0 6 1 0 25 chain 536108 chrX 155270560 + 138341710 138347823 L1PA5 6144 + 3 6131 3430 915 0 4 297 0 1 305 0 1 1251 1 0 72 0 1 351 0 1 646 0 5 16 5 6 37 2 1 59 0 1 378 0 2 275 1 0 694 0 1 808 chain 3976 chrX 155270560 + 138353711 138353760 MIR 256 - 146 195 207741 49 chain 67760 chrX 155270560 + 138360133 138361165 L1MA2 4263 + 3110 4115 49340 325 1 0 132 0 1 14 0 2 5 4 0 23 0 1 49 2 1 107 7 4 22 6 7 5 3 0 55 3 0 5 26 16 68 15 13 40 0 2 46 24 18 34 1 0 10 chain 29568 chrX 155270560 + 138384910 138385220 AluYf4 310 + 0 310 86343 310 chain 18376 chrX 155270560 + 138388692 138389049 THE1D 372 + 0 372 131860 54 11 21 53 0 4 34 88 90 84 1 0 32 chain 91294 chrX 155270560 + 138389053 138390449 THE1D-int 1627 + 1 1621 39199 11 0 2 214 0 1 5 3 4 30 5 6 71 1 103 84 7 6 185 3 0 18 21 36 112 1 6 161 1 0 4 0 1 41 0 205 25 1 2 155 0 1 24 2 0 72 109 5 30 chain 10948 chrX 155270560 + 138392179 138392447 L1MC4 1079 - 259 522 156411 54 1 0 37 105 103 63 2 0 6 chain 111240 chrX 155270560 + 138402788 138404203 LTR12C 1709 + 0 1709 33878 140 13 22 100 0 1 201 6 7 30 11 9 140 0 278 144 0 2 38 1 0 5 3 1 102 15 8 216 0 13 14 2 5 149 1 0 84 chain 252543 chrX 155270560 + 138417836 138421201 L1PB1 5432 - 334 3722 16101 293 0 8 167 0 1 175 0 2 234 0 1 150 10 15 32 9 10 270 0 3 10 0 7 878 2 0 7 0 1 223 1 0 101 24 23 242 2 0 144 10 8 149 0 1 139 4 5 89 chain 88994 chrX 155270560 + 138424073 138425047 LTR5_Hs 974 - 0 974 40007 974 chain 22374 chrX 155270560 + 138444850 138445124 AluSp 311 + 39 311 118609 94 2 0 178 chain 29861 chrX 155270560 + 138455373 138455702 L1PA4 6152 - 14 342 85235 246 1 0 82 chain 105065 chrX 155270560 + 138457184 138458439 L1P3 4156 - 17 1270 35489 24 2 1 9 2 0 529 0 5 51 7 2 34 0 1 597 chain 68668 chrX 155270560 + 138458439 138459252 L1PA7 6471 + 5643 6454 48921 250 2 0 328 0 1 91 2 1 140 chain 16132 chrX 155270560 + 138462820 138463036 L1PA8 5853 - 0 211 137959 92 2 1 19 2 1 52 2 0 11 1 0 35 chain 69051 chrX 155270560 + 138463814 138465011 MER52C 1267 - 16 1267 48787 9 1 0 66 0 3 27 0 5 39 3 8 33 10 9 74 1 0 37 1 0 12 63 0 31 3 0 26 5 0 116 48 45 119 1 2 12 7 6 73 4 7 15 61 195 22 2 0 140 17 1 119 chain 29125 chrX 155270560 + 138478386 138478761 MLT2A1 477 + 0 374 88438 169 4 1 11 6 7 17 0 1 168 chain 466455 chrX 155270560 + 138478829 138484794 HERVL-int 5654 + 0 5645 8175 48 0 14 208 0 42 343 2 0 513 391 0 126 0 1 5 0 2 4 1 0 690 0 1 27 0 1 177 1 0 346 4 3 352 0 1 598 15 14 331 1 2 625 0 1 200 4 5 424 3 14 383 0 1 143 chain 32479 chrX 155270560 + 138479958 138480334 L1PA5 6144 + 5770 6142 80065 365 4 0 7 chain 21477 chrX 155270560 + 138490343 138490645 L1MA2 4263 - 158 452 122230 47 7 0 42 0 1 50 11 9 145 chain 3980 chrX 155270560 + 138506278 138506321 MER3 215 - 106 149 207675 43 chain 146108 chrX 155270560 + 138516209 138517850 L1P1 4361 - 33 1677 25144 23 1 0 155 1 0 217 0 1 493 0 3 139 0 1 612 chain 538336 chrX 155270560 + 138517855 138523981 L1PA4 6152 + 0 6136 3095 728 1 3 368 0 11 1587 5 0 302 0 1 940 0 1 2195 chain 133991 chrX 155270560 + 138527432 138528904 L1PA3long 6157 + 4686 6157 27210 1212 1 0 259 chain 9219 chrX 155270560 + 138536457 138536561 L1PA8 5853 - 0 103 164457 93 1 0 10 chain 121740 chrX 155270560 + 138543647 138545215 THE1A-int 1579 + 0 1574 30462 75 5 14 389 4 6 134 1 0 430 5 2 88 9 5 7 0 4 408 1 0 12 chain 16190 chrX 155270560 + 138558332 138558606 LTR56 451 + 37 315 137782 38 56 59 81 0 1 99 chain 18928 chrX 155270560 + 138563379 138563643 L1PA8 5853 - 3 261 130296 90 1 0 19 2 1 51 2 1 8 2 1 71 2 0 16 chain 11042 chrX 155270560 + 138571549 138571669 L1PA4 6152 - 1337 1457 155684 120 chain 105735 chrX 155270560 + 138571669 138572865 L1PA4 6152 + 4834 6038 35322 832 1 0 233 0 9 130 chain 8164 chrX 155270560 + 138572865 138572964 L1PA4 6152 + 6039 6138 170146 99 chain 3737 chrX 155270560 + 138586099 138586177 MIRb 242 - 155 232 211353 13 3 0 6 0 1 29 13 14 14 chain 22644 chrX 155270560 + 138590202 138590491 LTR1 825 + 449 738 117359 5 0 3 7 3 0 274 chain 122740 chrX 155270560 + 138592864 138594228 L1PA5 6144 + 4780 6144 30144 1364 chain 45458 chrX 155270560 + 138599916 138600461 LTR14 556 + 0 556 62540 463 0 10 78 0 1 4 chain 15880 chrX 155270560 + 138605521 138605701 L1PBa 3878 + 1975 2155 138707 180 chain 546304 chrX 155270560 + 138605713 138611858 L1PA4 6152 + 0 6152 1909 511 0 5 1194 1 0 608 0 2 1620 0 1 1351 0 1 524 4 3 332 chain 37690 chrX 155270560 + 138631523 138631994 MER9a3 513 - 0 513 72567 79 0 1 96 8 29 20 0 18 250 0 2 18 chain 49801 chrX 155270560 + 138654710 138655298 L1PA7 6471 - 1 591 59156 490 4 5 43 0 1 51 chain 19574 chrX 155270560 + 138675288 138675507 L1PA3long 6157 - 2742 2961 128451 219 chain 217376 chrX 155270560 + 138675509 138677896 L1PA3long 6157 + 3458 6157 18036 455 5 317 1927 chain 4968 chrX 155270560 + 138701551 138701619 L1PB1 5432 + 5346 5411 195497 24 1 0 21 1 0 13 1 0 7 chain 123488 chrX 155270560 + 138703679 138705050 L1PA4 6152 + 4781 6151 29882 1117 1 0 253 chain 42615 chrX 155270560 + 138710063 138710631 L1PA16 3655 + 3019 3589 65878 8 0 1 176 1 0 6 0 1 62 0 1 16 6 5 222 0 4 56 3 0 12 chain 15570 chrX 155270560 + 138737690 138737900 L1PA5 6144 - 9 212 139668 145 21 14 44 chain 13337 chrX 155270560 + 138745854 138746042 L1MA4A 3247 - 2960 3145 146946 26 1 0 47 1 0 6 1 0 106 chain 524370 chrX 155270560 + 138752477 138758616 L1PA6 6164 - 3 6164 4735 143 0 4 8 8 4 2769 5 6 898 4 0 292 1 0 486 1 2 82 0 4 150 1 2 6 0 18 48 0 1 742 0 1 26 1 0 46 0 1 422 chain 51142 chrX 155270560 + 138758989 138759670 MER50 708 + 0 685 58224 45 7 10 111 5 6 28 0 1 54 0 1 4 1 0 20 1 0 14 0 1 184 2 1 205 chain 38770 chrX 155270560 + 138767398 138767860 LTR2 463 + 0 463 71054 362 12 13 88 chain 42872 chrX 155270560 + 138767898 138768510 L1PREC2 3366 + 1696 2304 65566 67 4 9 178 3 2 79 10 0 133 12 15 60 2 1 64 chain 7744 chrX 155270560 + 138784454 138784550 U13_ 108 - 12 108 172628 96 chain 11540 chrX 155270560 + 138802748 138802894 BC200 147 + 6 147 154142 36 2 0 96 3 0 9 chain 4829 chrX 155270560 + 138824469 138824531 MIR 256 - 132 194 197024 62 chain 37236 chrX 155270560 + 138835181 138835684 L1PA15 4387 + 1072 1575 73191 127 2 1 65 7 9 202 1 0 99 chain 27001 chrX 155270560 + 138853210 138853563 THE1A 353 + 0 353 96280 111 1 0 59 0 2 30 12 11 140 chain 130741 chrX 155270560 + 138853563 138855125 THE1A-int 1579 + 0 1574 27918 447 0 1 203 0 1 69 0 3 115 0 1 575 2 0 78 0 8 73 chain 25959 chrX 155270560 + 138855130 138855479 THE1A 353 + 0 353 100178 109 2 1 32 1 0 39 0 1 4 1 0 16 1 0 31 0 7 113 chain 7923 chrX 155270560 + 138923040 138923168 L1PB1 5432 + 5308 5427 171497 19 2 0 5 1 0 14 2 0 24 1 0 6 0 1 14 1 0 13 1 0 18 2 0 5 chain 195895 chrX 155270560 + 138936699 138939432 HERVIP10FH-int 2884 + 149 2876 19506 62 8 0 4 4 0 184 2 1 49 8 10 168 1 0 9 1 0 11 0 1 423 1 7 139 0 1 162 4 1 7 3 0 11 1 0 7 1 0 62 6 1 13 4 5 95 13 222 98 0 1 147 1 0 199 2 1 24 1 0 235 0 2 128 1 0 66 1 0 24 0 1 25 1 0 17 1 0 13 10 4 35 207 22 10 2 0 15 2 0 5 chain 32317 chrX 155270560 + 138939487 138939944 LTR10F 562 + 0 514 80342 96 0 1 9 0 56 47 29 1 20 0 24 12 4 10 72 1 0 52 0 1 74 2 0 39 chain 28428 chrX 155270560 + 138941978 138942290 AluYa5 310 + 0 308 91474 97 1 0 35 3 0 176 chain 26223 chrX 155270560 + 138954522 138954823 L1PA5 6144 - 0 300 99114 129 1 0 171 chain 4413 chrX 155270560 + 138984691 138984770 MER21-int 1364 + 1149 1228 201768 28 7 5 27 1 3 16 chain 28235 chrX 155270560 + 138995599 138995999 LTR7 482 + 0 477 92172 35 1 0 66 20 14 17 0 51 41 5 37 46 0 1 169 chain 19178 chrX 155270560 + 139003367 139003724 THE1D 372 + 16 372 129590 37 9 0 21 3 0 6 7 11 22 0 3 23 0 1 26 69 72 134 chain 25986 chrX 155270560 + 139021022 139021446 MER4A1 472 + 0 466 100070 34 3 20 177 95 120 115 chain 477487 chrX 155270560 + 139041402 139047238 L1PA8 5853 + 50 5853 7817 18 18 14 13 50 14 192 35 31 52 5 6 764 4 2 491 1 0 702 0 10 529 1 0 347 1 2 565 0 2 46 5 11 6 1 0 22 0 4 1112 0 1 4 3 1 192 9 10 349 1 0 46 2 0 70 2 1 8 3 1 52 2 1 19 1 0 93 chain 22897 chrX 155270560 + 139060784 139061068 L1PA8A 6298 + 6007 6290 116124 173 5 4 106 chain 556216 chrX 155270560 + 139071168 139077321 L1PA3long 6157 - 0 6157 698 14 0 3 2195 0 1 2135 0 1 15 1 0 1793 chain 192055 chrX 155270560 + 139080196 139082653 L1PA8 5853 - 0 2432 19864 92 2 1 17 1 0 42 7 0 8 0 6 8 2 1 70 2 0 44 1 0 20 1 0 75 0 1 255 3 4 150 0 2 43 0 3 64 0 1 57 22 16 396 24 18 123 1 0 100 4 5 41 0 2 128 0 4 438 1 0 30 19 1 166 chain 274341 chrX 155270560 + 139082777 139086371 L1P3 4156 + 6 4072 14959 129 153 166 20 1 0 85 3 0 258 22 41 217 23 7 558 3 0 269 0 1 56 0 1 444 3 0 11 1 462 610 2 1 321 0 3 401 0 1 4 chain 6931 chrX 155270560 + 139091579 139091705 L1PB 1623 + 223 358 177953 46 3 0 5 0 2 16 18 28 38 chain 6642 chrX 155270560 + 139091705 139091817 L1PREC2 3366 + 330 448 178797 42 1 2 31 1 0 6 9 15 22 chain 51274 chrX 155270560 + 139097412 139098014 L1PA6 6164 + 5555 6162 58137 102 0 9 165 0 1 315 1 0 9 4 0 6 chain 16949 chrX 155270560 + 139098660 139098847 L1PA3long 6157 + 5965 6152 135735 187 chain 129269 chrX 155270560 + 139106214 139107708 L1PA5 6144 - 10 1505 28248 862 7 8 625 chain 87135 chrX 155270560 + 139113424 139114447 L1PA7 6471 - 12 1042 40722 143 9 9 608 0 2 72 0 4 24 7 8 160 chain 45036 chrX 155270560 + 139118480 139119031 MER41A 554 - 1 554 63012 125 4 6 422 chain 2539 chrX 155270560 + 139122197 139122244 L1M1 2793 + 1166 1212 232661 14 6 5 27 chain 35157 chrX 155270560 + 139125328 139125778 L1PA8 5853 - 0 443 75975 93 1 0 19 2 1 52 1 0 9 6 5 66 2 0 44 1 0 154 chain 30796 chrX 155270560 + 139149672 139150020 L1PA7 6471 - 2 347 82872 10 3 0 335 chain 5842 chrX 155270560 + 139151616 139151702 MER106A 234 + 107 198 186755 47 3 5 13 0 3 23 chain 151893 chrX 155270560 + 139159754 139161538 HERV17-int 4347 + 2512 4332 24351 30 1 18 209 0 5 202 0 1 538 0 3 366 0 1 28 1 9 312 0 1 97 chain 29107 chrX 155270560 + 139162654 139162980 LTR17 781 + 0 326 88517 326 chain 32520 chrX 155270560 + 139213660 139214029 L1P1 4361 - 795 1164 79990 369 chain 35346 chrX 155270560 + 139214030 139214453 L1PA6 6164 + 5745 6162 75738 86 0 1 324 7 0 6 chain 58240 chrX 155270560 + 139229173 139229844 L1PA5 6144 - 5 669 53838 247 2 1 252 6 0 164 chain 142616 chrX 155270560 + 139233687 139235430 L1PA8 5853 - 57 1805 25709 35 3 2 18 2 1 50 1 0 10 4 3 29 0 9 31 2 0 44 1 0 917 0 1 156 1 2 49 0 1 390 chain 3589 chrX 155270560 + 139264867 139264908 MER96B 391 + 231 272 213847 41 chain 3038 chrX 155270560 + 139265099 139265131 MER20 218 + 186 218 224230 32 chain 3517 chrX 155270560 + 139267940 139267982 MIR 256 - 112 154 215101 42 chain 5252 chrX 155270560 + 139278150 139278216 MER53 195 + 0 66 192496 66 chain 4807 chrX 155270560 + 139285904 139285980 L1MD 993 + 388 465 197266 16 6 7 54 chain 5269 chrX 155270560 + 139287565 139287624 L1PA3long 6157 - 1 60 192331 59 chain 51861 chrX 155270560 + 139299886 139300498 L1PA6 6164 - 2 609 57711 6 4 0 9 1 0 592 chain 6776 chrX 155270560 + 139309337 139309418 LTR32 486 - 14 95 179137 81 chain 6003 chrX 155270560 + 139310052 139310183 L1MA8 2339 - 76 199 185213 6 1 0 24 17 15 23 6 0 35 2 3 17 chain 4929 chrX 155270560 + 139314387 139314447 L1MC2 1988 - 600 660 195945 60 chain 29336 chrX 155270560 + 139315443 139315753 AluYa5 310 - 0 310 87367 310 chain 313172 chrX 155270560 + 139317323 139320855 L1PA5 6144 - 1 3526 12885 353 0 1 502 7 1 2090 1 0 77 1 0 501 chain 217826 chrX 155270560 + 139321333 139324832 L1MA1 4479 - 328 3847 18012 9 1 0 35 2 0 23 7 6 10 0 1 111 1 0 4 8 5 88 1 0 6 0 1 6 5 3 13 2 1 17 6 16 41 1 0 16 15 13 12 1 0 119 15 6 8 0 9 48 1 0 22 12 20 92 10 8 120 5 4 7 1 0 73 4 0 17 22 20 70 6 10 62 19 17 19 1 0 83 15 14 45 0 1 16 1 0 29 42 46 61 8 7 5 0 1 50 2 0 193 0 1 134 11 14 22 2 1 33 0 1 40 4 0 62 3 5 15 0 2 40 5 1 51 0 1 29 1 3 4 1 0 14 17 19 125 0 1 48 0 2 133 0 3 100 1 0 14 69 75 53 2 1 5 0 2 27 6 8 46 2 1 12 0 5 60 0 6 70 1 0 129 0 3 136 1 0 63 6 0 62 0 2 96 chain 30084 chrX 155270560 + 139324842 139325220 THE1C 375 + 0 375 84545 261 2 0 89 1 0 25 chain 88080 chrX 155270560 + 139327080 139328331 L1PB1 5432 - 19 1242 40344 9 1 0 13 1 0 21 1 0 23 3 1 11 11 8 19 13 5 7 3 0 12 4 3 19 0 4 21 1 0 16 2 1 51 2 0 11 18 13 7 1 0 24 1 0 8 4 3 289 1 2 146 0 1 39 3 0 272 0 1 163 chain 468984 chrX 155270560 + 139337636 139343290 HERVL-int 5654 - 0 5654 8072 108 1 0 611 0 1 1020 0 2 177 0 13 453 0 3 183 0 3 362 1 0 430 2 0 183 0 1 190 4 3 229 0 1 325 0 1 231 1 0 85 0 2 166 6 11 137 0 6 80 40 0 399 0 8 230 chain 467972 chrX 155270560 + 139348994 139354898 L1PA8 5853 - 0 5803 8111 93 1 0 18 1 0 50 1 0 13 2 1 37 0 1 30 7 5 28 0 1 11 1 0 49 0 1 420 1 0 7 1 4 79 4 0 325 0 7 81 15 2 206 1 0 14 1 0 27 0 2 1 39 0 92 0 1 31 3 1 161 1 0 144 0 2 687 1 0 333 6 0 33 0 3 363 0 4 273 0 2 192 2 1 94 4 0 1137 0 3 119 0 1 4 7 4 5 1 0 47 0 4 282 27 15 191 52 16 13 2 1 8 3 1 22 chain 6587 chrX 155270560 + 139359093 139359182 L1MA2 4263 - 163 245 180562 42 7 0 40 chain 236139 chrX 155270560 + 139367563 139374049 L1PA11 4918 - 419 4911 16972 11 1 0 15 3 1 62 28 25 42 5 7 6 5 0 106 5 7 315 15 13 223 2 0 92 0 2 48 0 2 219 0 8 17 3274 1280 184 0 1 66 0 4 373 0 6 158 0 1 97 2 3 76 0 1 64 1 0 172 1 2 42 1 0 129 1 0 273 1 0 127 9 6 32 1 0 53 2 0 13 1 0 35 3 0 38 2 0 35 chain 127606 chrX 155270560 + 139368783 139370260 L1PA5 6144 + 4663 6144 28672 576 0 1 270 0 2 410 0 1 221 chain 33438 chrX 155270560 + 139371584 139372036 MLT2A2 560 + 0 560 78505 180 1 0 122 2 111 87 1 0 5 0 1 54 chain 26745 chrX 155270560 + 139397997 139398351 THE1B 368 - 0 368 97181 196 6 5 112 1 16 39 chain 46466 chrX 155270560 + 139402878 139403392 L1PA3long 6157 - 0 514 61626 514 chain 292392 chrX 155270560 + 139415019 139418889 L1PA6 6164 + 2283 6152 13870 37 8 5 468 0 4 240 10 11 129 2 1 614 0 1 71 22 11 56 14 9 281 3 4 40 1 0 7 0 1 376 42 41 508 2 1 118 0 6 144 1 2 112 4 8 479 5 1 34 0 7 42 chain 27184 chrX 155270560 + 139433540 139433910 THE1C 375 + 0 375 95647 81 1 8 36 3 0 211 9 10 29 chain 3967 chrX 155270560 + 139454592 139454638 MER58A 224 - 121 167 207887 46 chain 7753 chrX 155270560 + 139456900 139457001 MSTD 398 + 296 396 172585 31 1 0 69 chain 28043 chrX 155270560 + 139458498 139459056 L1PA14 3548 + 2948 3485 92846 5 2 0 4 1 0 20 32 28 25 7 8 72 4 0 21 10 7 141 0 1 9 4 13 29 1 0 9 5 1 37 42 36 41 6 0 10 1 0 20 chain 175351 chrX 155270560 + 139461687 139463754 L1PA7 6471 + 4392 6457 21414 1230 0 3 48 5 4 249 2 0 206 3 1 324 chain 3812 chrX 155270560 + 139474348 139474586 ORSL 269 + 70 267 210195 36 133 94 15 33 31 21 chain 205504 chrX 155270560 + 139475608 139478952 L1MA1 4479 + 1235 4190 18826 36 16 14 73 1 0 285 0 2 21 320 19 397 13 11 21 0 1 59 0 3 248 21 0 103 3 0 70 1 0 70 1 0 103 3 1 32 1 0 68 20 24 8 1 0 4 0 1 47 4 3 24 5 3 69 4 3 102 2 0 13 4 0 78 1 0 11 14 10 26 18 13 78 3 0 89 1 13 25 2 0 199 1 0 24 2 0 16 1 0 71 1 0 5 8 9 5 2 0 17 25 5 63 13 6 11 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 1 0 6 4 2 13 7 0 18 chain 221070 chrX 155270560 + 139480751 139483918 L1PA14 3548 + 337 3485 17811 156 14 1 171 0 9 59 7 0 123 0 4 11 2 1 447 3 0 45 17 21 111 3 0 7 18 12 215 0 1 238 2 0 5 1 3 6 0 5 26 0 1 163 7 26 125 0 6 210 1 0 28 0 2 16 0 1 73 5 1 248 2 0 24 3 1 14 2 0 47 12 8 101 3 1 8 2 0 13 2 0 6 1 0 84 10 9 102 14 9 38 4 2 11 1 0 5 1 0 18 1 0 19 0 2 19 6 0 10 1 0 20 chain 307032 chrX 155270560 + 139485944 139491351 L1PB1 5432 - 30 4231 13131 11 1 0 21 1 0 24 2 0 14 1 0 7 2 0 12 6 0 6 5 2 5 2 0 4 1 0 15 1 0 45 20 18 46 21 15 13 1 0 6 1 0 21 47 0 18 14 1 21 6 10 253 2 0 109 0 2 75 3 0 28 14 1 49 1 0 239 17 14 189 1 0 372 1 0 157 0 1 281 0 1 85 0 1 225 7 8 172 6 8 97 794 11 69 1 0 117 0 1 132 322 0 49 0 1 49 0 3 548 6 5 304 0 1 6 6 0 51 24 27 125 chain 4854 chrX 155270560 + 139489077 139489130 L1PA6 6164 + 5779 5832 196736 53 chain 29287 chrX 155270560 + 139489131 139489461 L1PA6 6164 + 5832 6162 87632 330 chain 34639 chrX 155270560 + 139496514 139497009 MER1A 529 - 0 529 76704 64 6 10 359 42 72 24 chain 140334 chrX 155270560 + 139501332 139502865 L1PA3long 6157 - 12 1547 26094 1206 0 1 121 0 1 206 chain 19368 chrX 155270560 + 139525263 139525510 L1PA8 5853 - 0 245 129030 93 1 0 19 2 1 52 0 1 5 1 0 74 chain 11123 chrX 155270560 + 139537008 139537130 L1PA3long 6157 + 6035 6157 155724 122 chain 23272 chrX 155270560 + 139555789 139556076 AluSp 311 + 20 309 114335 89 1 2 170 0 1 27 chain 7784 chrX 155270560 + 139556127 139556223 MLT1C 463 - 0 97 172394 53 1 2 42 chain 15767 chrX 155270560 + 139638528 139638879 L1MA4 2864 + 2495 2809 139063 20 0 1 22 11 9 118 109 75 27 2 0 42 chain 101282 chrX 155270560 + 139649513 139650628 L1PA4 6152 - 19 1135 36448 124 0 1 991 chain 14483 chrX 155270560 + 139680233 139680400 L1PA7 6471 + 6278 6445 142935 167 chain 19778 chrX 155270560 + 139683985 139684217 L1PA5 6144 + 5912 6141 127878 219 3 0 10 chain 16505 chrX 155270560 + 139691437 139691784 MSTA 426 + 0 401 136901 96 24 48 73 77 100 20 5 12 52 chain 118480 chrX 155270560 + 139699853 139701195 L1PA5 6144 - 1 1343 31623 148 0 5 8 6 1 1180 chain 524991 chrX 155270560 + 139715089 139721247 L1PA6 6164 + 1 6159 4686 200 0 1 307 2 1 553 1 0 1260 4 5 857 3 0 4 0 1 89 0 2 238 6 4 845 0 4 72 1 2 1547 2 1 160 2 0 5 chain 46869 chrX 155270560 + 139756127 139756811 MER50 708 + 6 708 61336 41 7 11 219 11 8 80 2 1 70 29 30 72 0 5 12 0 3 5 3 0 44 0 12 89 chain 68790 chrX 155270560 + 139760659 139761452 L1PA5 6144 + 5349 6143 48902 634 0 1 159 chain 75471 chrX 155270560 + 139764656 139765663 MER11A 1151 + 0 1147 45786 55 0 99 76 1 0 64 4 0 146 0 1 77 0 1 16 8 9 95 0 8 37 5 6 111 0 1 33 17 48 37 0 1 60 9 10 156 chain 51988 chrX 155270560 + 139768221 139769213 L1PA8 5853 + 5185 5853 57631 344 317 0 35 1 0 44 2 0 70 2 1 9 14 13 39 2 1 19 1 0 93 chain 11572 chrX 155270560 + 139774464 139774688 LTR39 781 - 595 781 154014 21 43 10 104 22 15 10 0 2 24 chain 12068 chrX 155270560 + 139777790 139777972 THE1C 375 - 169 348 151909 53 20 0 9 0 17 100 chain 35178 chrX 155270560 + 139777999 139778432 THE1C-int 1605 - 0 433 75942 433 chain 28480 chrX 155270560 + 139778471 139778829 THE1C 375 - 19 375 91262 5 1 0 237 1 0 114 chain 23039 chrX 155270560 + 139804944 139805234 AluSp 311 + 12 311 115452 210 8 16 26 0 1 46 chain 8592 chrX 155270560 + 139822854 139822984 MER45A 178 + 57 170 167779 12 17 0 101 chain 5210 chrX 155270560 + 139828486 139828545 L1MA7 2200 - 150 209 192915 59 chain 20559 chrX 155270560 + 139833290 139833584 L1PB2 3958 - 242 529 125440 35 1 0 64 1 0 60 0 4 6 5 2 93 4 0 14 2 0 9 chain 3258 chrX 155270560 + 139847120 139847181 MER96B 391 - 21 79 219808 7 2 0 27 6 5 19 chain 22745 chrX 155270560 + 139852281 139852546 MER41B 635 + 2 267 116849 91 1 0 35 0 1 138 chain 51493 chrX 155270560 + 139858778 139859464 L1PA8 5853 + 5165 5846 57970 54 0 1 162 0 2 141 22 21 18 1 0 46 2 0 68 2 1 8 2 1 51 3 2 19 1 0 86 chain 39797 chrX 155270560 + 139884597 139885048 L1PA6 6164 - 6 457 69629 451 chain 29000 chrX 155270560 + 139891203 139891647 L1PB2 3958 - 120 555 88982 43 22 21 21 2 0 71 2 1 64 1 0 79 1 0 76 0 3 7 4 0 13 2 0 36 chain 58941 chrX 155270560 + 139922061 139922714 L1PA4 6152 - 1 654 53433 653 chain 72856 chrX 155270560 + 139941494 139942601 L1M1 2793 + 728 1798 47091 12 8 4 15 21 16 27 1 0 29 2 0 8 2 1 53 6 4 4 1 0 100 7 6 104 2 1 4 0 1 65 1 0 68 4 0 19 22 17 76 0 1 299 1 0 4 10 0 132 chain 13655 chrX 155270560 + 139948721 139948887 L1PA15 4387 + 67 233 145760 166 chain 8572 chrX 155270560 + 139954903 139955028 L1PA16 3655 - 999 1123 167898 93 7 6 25 chain 55785 chrX 155270560 + 139962361 139963221 L1PBa1 4058 + 10 859 55255 26 1 0 10 5 3 7 1 0 246 31 13 108 7 5 123 0 1 5 1 0 4 0 6 51 72 71 48 1 10 77 1 0 35 chain 100435 chrX 155270560 + 139974597 139975880 HSMAR1 1287 + 1 1287 36646 948 0 2 220 2 1 79 5 7 29 chain 45338 chrX 155270560 + 139977189 139977741 MER41A 554 - 4 554 62673 9 1 0 354 3 2 185 chain 6429 chrX 155270560 + 139980708 139980868 MER41-int 2638 - 2416 2553 181790 5 2 0 4 1 0 29 26 15 7 1 0 6 0 1 43 18 9 18 chain 46072 chrX 155270560 + 139982531 139983067 MER41A 554 - 0 541 61974 81 0 5 455 chain 7348 chrX 155270560 + 139983864 139983957 L1PA5 6144 - 0 91 175107 11 3 1 79 chain 36549 chrX 155270560 + 139983957 139984371 L1PA5 6144 + 5651 6066 74170 159 0 1 255 chain 72754 chrX 155270560 + 140005527 140006481 MER41-int 2638 - 16 967 47144 168 0 8 97 1 0 25 2 1 85 12 4 200 0 1 114 0 1 42 2 0 18 2 1 186 chain 18412 chrX 155270560 + 140006998 140007347 THE1D 372 + 19 372 131742 35 75 69 62 13 15 24 1 0 95 0 9 44 chain 24259 chrX 155270560 + 140035500 140035788 AluSp 311 - 14 301 108896 173 1 0 114 chain 24240 chrX 155270560 + 140068118 140068411 AluSp 311 - 20 311 108996 159 2 0 132 chain 17186 chrX 155270560 + 140092675 140092897 LTR19A 502 + 0 221 135076 34 4 3 184 chain 10062 chrX 155270560 + 140094346 140094766 LTR19-int 1103 + 43 237 160266 5 1 0 13 3 1 7 1 0 17 1 0 11 141 0 27 17 0 7 1 0 17 1 0 55 38 7 11 30 0 16 chain 17186 chrX 155270560 + 140104676 140104898 LTR19A 502 + 0 221 135075 34 4 3 184 chain 45562 chrX 155270560 + 140106347 140107785 LTR19-int 1103 + 43 1060 62448 5 1 0 13 3 1 7 1 0 17 1 0 11 141 0 27 17 0 7 1 0 17 1 0 55 38 7 11 30 0 34 99 68 41 8 0 88 6 1 40 1 0 83 4 0 19 14 0 50 1 0 8 30 18 18 30 33 59 42 5 8 1 0 10 5 2 16 2 0 6 1 0 33 41 16 20 16 3 5 2 0 4 1 0 14 1 0 17 1 0 13 28 17 5 2 0 25 1 0 6 33 16 13 4 2 9 3 1 13 chain 140914 chrX 155270560 + 140111492 140113151 L1PA4 6152 - 3556 5218 26005 736 0 2 423 0 1 197 1 0 257 13 14 32 chain 302141 chrX 155270560 + 140113151 140116674 L1PA4 6152 + 2605 6143 13314 578 2 1 62 8 13 183 0 3 891 1 0 406 0 3 465 3 1 632 3 11 289 chain 12778 chrX 155270560 + 140124895 140125077 THE1B 368 + 157 335 149145 17 1 0 41 5 4 87 2 0 29 chain 6559 chrX 155270560 + 140125410 140125727 THE1B-int 1605 + 0 318 80084 284 9 10 24 chain 78112 chrX 155270560 + 140125745 140126829 MER11A 1151 - 0 1149 44455 92 0 1 74 0 1 11 2 0 35 1 2 14 0 1 36 18 0 22 43 0 26 0 26 266 5 6 94 0 1 148 1 0 3 3 0 69 5 6 63 0 99 53 chain 3062 chrX 155270560 + 140126831 140126979 THE1B-int 1605 + 330 503 80084 102 24 49 22 chain 3389 chrX 155270560 + 140137527 140137564 MLT2B1 522 + 482 519 217322 37 chain 489866 chrX 155270560 + 140138500 140144423 L1PA5 6144 + 0 6137 7374 120 5 19 929 3 1 40 27 220 469 2 0 44 0 1 470 3 1 571 2 0 614 3 4 172 2 0 174 0 17 475 1 5 519 1 0 148 3 1 145 14 9 126 1 0 369 0 3 471 chain 24912 chrX 155270560 + 140144522 140144819 AluSp 311 - 11 311 105264 121 0 2 97 0 1 79 chain 4908 chrX 155270560 + 140154264 140154317 THE1B 368 + 3 56 196187 53 chain 6817 chrX 155270560 + 140172276 140172404 L1PB4 2604 + 2415 2545 178822 27 17 16 29 12 15 43 chain 5549 chrX 155270560 + 140173119 140173193 THE1A 353 - 11 86 189575 17 0 2 45 1 0 11 chain 27197 chrX 155270560 + 140181136 140181846 MER4A1 472 + 0 409 95608 218 9 30 79 1 0 14 313 0 27 12 4 37 chain 39930 chrX 155270560 + 140182191 140182740 MER41A 554 - 0 554 69423 103 1 4 57 0 1 74 0 1 97 5 6 21 4 5 9 3 0 83 0 1 92 chain 42658 chrX 155270560 + 140199145 140199656 LTR10D 510 + 0 510 65831 231 6 5 274 chain 26917 chrX 155270560 + 140202836 140203126 L1PA5 6144 + 5849 6139 96563 290 chain 69095 chrX 155270560 + 140211471 140212212 L1HS 6032 - 0 742 48762 162 0 1 579 chain 10178 chrX 155270560 + 140212214 140212321 U6 107 - 0 107 159724 107 chain 3693 chrX 155270560 + 140214633 140214678 MLT1A1-int 1737 - 563 608 212046 45 chain 30427 chrX 155270560 + 140217336 140217654 AluYb8 318 + 0 318 83585 318 chain 25913 chrX 155270560 + 140242169 140242478 AluY 311 + 0 310 100360 65 0 5 56 4 0 184 chain 39165 chrX 155270560 + 140249430 140250251 LTR10F 562 + 0 562 70519 40 0 2 153 1 60 42 6 2 156 315 0 43 3 2 62 chain 28404 chrX 155270560 + 140251302 140251642 L1PA7 6471 + 6128 6469 91559 122 2 5 204 2 0 10 chain 9691 chrX 155270560 + 140278489 140278598 L1PA5 6144 - 8 117 162136 109 chain 98588 chrX 155270560 + 140281950 140283240 LTR12C 1709 - 0 1709 37128 61 1 132 40 1 0 4 38 9 23 5 2 30 0 2 178 0 4 106 6 163 101 0 118 403 11 51 282 chain 105862 chrX 155270560 + 140287251 140288797 THE1B-int 1605 + 35 1605 35294 80 54 0 15 0 2 138 5 11 114 0 64 171 3 10 35 1 0 6 0 1 6 15 16 9 2 1 30 0 9 9 16 8 385 0 1 13 7 0 46 0 6 44 19 0 21 13 24 34 0 5 144 0 1 111 chain 5899 chrX 155270560 + 140289828 140290034 L1MC4 1079 - 799 1005 186197 24 83 84 12 26 25 61 chain 13020 chrX 155270560 + 140296829 140297155 MSTA 426 + 26 399 148175 85 2 26 22 0 4 25 29 30 18 95 113 50 chain 32857 chrX 155270560 + 140313070 140313446 L1PA7 6471 - 1 377 79443 376 chain 10744 chrX 155270560 + 140314767 140314888 L1PA4 6152 + 6022 6143 157221 121 chain 283579 chrX 155270560 + 140317798 140321336 L1PA7 6471 - 1 3546 14427 11 2 0 139 6 0 6 0 7 31 0 1 61 0 2 512 0 2 77 3 0 108 0 2 856 1 0 392 20 21 358 1 0 4 0 1 115 0 3 175 0 3 79 3 1 17 12 12 231 4 0 6 8 12 300 chain 44441 chrX 155270560 + 140326730 140328225 LTR19-int 1103 - 43 1060 63645 13 3 1 12 4 2 10 33 16 6 1 0 25 2 0 5 28 17 13 1 0 18 1 0 13 1 0 4 2 0 5 16 3 20 41 16 33 1 0 6 2 0 16 5 2 10 1 0 8 99 5 60 77 68 8 1 0 15 8 8 27 14 0 19 4 0 83 1 0 40 6 1 88 8 0 41 47 37 11 41 20 34 30 0 10 39 8 55 1 0 17 1 0 7 17 0 25 141 0 13 1 0 17 1 0 7 2 0 14 1 0 5 chain 28803 chrX 155270560 + 140336061 140336511 LTR46 455 + 0 455 89884 188 3 1 13 29 30 124 32 38 61 chain 123849 chrX 155270560 + 140345264 140347071 L1P3 4156 - 17 1518 29750 24 2 1 7 2 0 488 314 0 16 1 0 63 0 5 41 1 0 10 0 1 179 2 0 453 3 0 6 0 3 79 0 9 116 chain 22376 chrX 155270560 + 140349683 140350053 THE1D 372 + 0 372 118602 144 46 47 15 17 18 74 0 1 41 1 0 32 chain 73609 chrX 155270560 + 140355360 140356218 L1PA7 6471 - 10 871 46630 329 0 1 485 3 2 20 0 3 21 chain 107926 chrX 155270560 + 140356218 140357479 L1PA7 6471 + 4352 5608 34740 135 0 1 446 14 7 8 0 1 658 chain 105791 chrX 155270560 + 140360841 140362003 L1PA3long 6157 - 4 1165 35307 335 1 0 826 chain 29431 chrX 155270560 + 140365841 140366245 MER4A1 472 - 10 414 86934 59 1 3 106 0 1 67 1 0 21 16 14 133 chain 18175 chrX 155270560 + 140367473 140367818 MSTA 426 - 0 400 132395 76 38 58 56 2 0 16 16 27 34 29 55 78 chain 2806 chrX 155270560 + 140372894 140372931 LTR88b 379 - 295 329 228663 27 3 0 7 chain 3345 chrX 155270560 + 140373941 140373992 MIR3 191 - 82 135 218131 11 3 4 5 0 1 32 chain 367626 chrX 155270560 + 140378576 140382763 L1PA4 6152 - 0 4160 11163 858 1 0 946 0 4 661 5 0 506 1 0 199 24 0 25 1 0 69 0 1 561 0 1 4 1 0 325 chain 4441 chrX 155270560 + 140389679 140389732 THE1D 372 - 319 372 201441 53 chain 51350 chrX 155270560 + 140390425 140391235 L1MA1 4479 + 3409 4190 58062 104 1 0 202 27 24 16 1 0 71 2 1 17 6 4 11 1 0 70 2 0 18 1 0 5 7 4 122 1 0 28 3 1 29 27 23 13 7 0 18 chain 4610 chrX 155270560 + 140399226 140399283 Tigger3b 1229 - 1137 1194 199516 57 chain 24195 chrX 155270560 + 140405977 140406278 AluSg7 307 + 6 292 109250 126 16 1 159 chain 25280 chrX 155270560 + 140408196 140408494 AluSp 311 + 4 302 103314 298 chain 93680 chrX 155270560 + 140410253 140411725 L1PA11 4918 - 293 1677 38447 14 47 33 11 2 0 13 1 0 15 48 35 16 1 0 16 2 0 57 10 8 12 1 0 49 1 2 9 6 0 3 0 1 134 3 0 19 57 16 106 0 1 6 1 0 271 25 22 66 1 0 28 5 0 86 1 2 46 0 4 283 chain 30847 chrX 155270560 + 140415361 140415711 L1PA7 6471 + 6109 6467 82773 255 0 8 95 chain 6134 chrX 155270560 + 140432425 140432515 L1PB 1623 - 1436 1525 184133 19 0 2 49 1 0 5 1 0 10 1 0 4 chain 12026 chrX 155270560 + 140437879 140438033 L1PA8 5853 - 6 158 152092 87 1 0 19 2 1 45 chain 5710 chrX 155270560 + 140448322 140448394 L1PA3long 6157 - 220 288 188020 9 4 0 59 chain 19502 chrX 155270560 + 140448394 140448610 L1PA3long 6157 + 5942 6157 128651 68 1 0 147 chain 153249 chrX 155270560 + 140450766 140452439 L1PA3long 6157 - 0 1677 24194 44 0 4 1629 chain 385706 chrX 155270560 + 140460743 140465889 L1PA8A 6298 + 1430 6290 10585 146 1 0 4 0 1 456 5 4 469 14 7 158 2 1 96 0 2 598 0 3 14 1 2 24 6 10 35 319 0 409 0 1 6 5 6 516 0 23 89 0 6 732 2 1 158 0 1 80 0 3 249 1 0 140 2 0 270 0 1 139 chain 107991 chrX 155270560 + 140474248 140476963 L1PB2 3958 + 1929 3838 34721 11 0 9 12 17 21 41 5 6 38 1034 245 115 0 3 54 2 0 44 0 1 10 6 5 35 0 3 134 3 6 11 0 1 4 16 15 166 5 0 5 1 0 140 0 1 176 30 21 13 1 0 34 14 12 42 18 12 64 8 3 11 4 0 92 1 0 72 6 5 57 1 0 74 3 1 22 1 0 62 chain 13802 chrX 155270560 + 140489280 140489502 LTR7B 505 - 294 505 145262 17 43 19 60 0 10 13 0 3 89 chain 3311 chrX 155270560 + 140495960 140495995 MLT2A1 477 - 2 37 218760 35 chain 21523 chrX 155270560 + 140508515 140508803 AluSp 311 - 19 306 122063 153 10 7 59 7 9 59 chain 109121 chrX 155270560 + 140526210 140527764 L1PB1 5432 - 5 1527 34413 5 2 0 18 1 0 13 1 0 21 1 0 24 7 5 10 1 0 4 2 0 19 17 6 22 1 0 43 1 0 16 2 1 44 10 8 9 5 1 12 1 0 8 1 0 21 5 0 10 6 7 9 0 1 275 0 2 7 5 1 166 1 0 17 0 1 96 6 5 22 3 8 11 0 4 272 0 1 5 1 0 206 2 0 82 1 0 4 chain 22107 chrX 155270560 + 140528957 140529241 AluSc 308 + 11 295 119747 25 1 0 234 8 9 16 chain 480423 chrX 155270560 + 140536400 140542051 L1PA5 6144 + 0 6131 7717 13 0 1 75 0 525 280 1 0 49 25 0 85 1 2 139 9 0 264 1 0 340 9 0 333 0 1 206 4 1 1368 3 1 873 1 0 131 0 1 606 1 0 36 0 2 92 0 1 556 17 17 133 chain 5673 chrX 155270560 + 140542868 140542934 L1PB4 2604 + 2432 2498 188359 66 chain 26917 chrX 155270560 + 140566472 140566762 L1PA5 6144 - 5 295 96564 290 chain 42994 chrX 155270560 + 140569949 140570460 LTR10D 510 - 0 510 65422 274 6 5 231 chain 39808 chrX 155270560 + 140586838 140587387 MER41A 554 + 0 554 69620 92 0 1 83 3 0 9 4 5 21 5 6 101 0 1 70 0 1 57 1 4 103 chain 27189 chrX 155270560 + 140587732 140588450 MER4A1 472 - 63 472 95635 37 12 4 23 321 0 18 1 0 79 9 30 218 chain 5549 chrX 155270560 + 140596468 140596542 THE1A 353 + 267 342 189574 12 1 0 44 0 2 17 chain 6817 chrX 155270560 + 140597257 140597385 L1PB4 2604 - 59 189 178823 43 12 15 29 17 16 27 chain 24798 chrX 155270560 + 140624819 140625117 AluSp 311 + 0 301 105901 79 0 1 97 0 2 122 chain 489148 chrX 155270560 + 140625215 140631138 L1PA5 6144 - 7 6144 7402 143 1 6 6 5 0 320 0 3 365 1 0 126 14 9 145 3 1 148 1 0 519 1 5 475 0 17 174 2 0 172 3 4 614 2 0 581 2 0 461 0 1 46 2 0 467 27 220 40 3 1 929 5 19 120 chain 3389 chrX 155270560 + 140632074 140632111 MLT2B1 522 - 3 40 217323 37 chain 3062 chrX 155270560 + 140642664 140642812 THE1B-int 1605 - 1102 1275 80085 22 24 49 102 chain 78598 chrX 155270560 + 140642814 140643898 MER11A 1151 + 2 1151 44223 53 0 99 63 5 6 69 3 0 3 1 0 148 0 1 94 0 1 277 1 27 19 43 0 22 18 0 36 0 1 14 1 2 35 2 0 11 0 1 74 0 1 92 chain 6559 chrX 155270560 + 140643916 140644233 THE1B-int 1605 - 1287 1605 80085 24 9 10 284 chain 12778 chrX 155270560 + 140644564 140644746 THE1B 368 - 33 211 149146 29 2 0 87 5 4 41 1 0 17 chain 302010 chrX 155270560 + 140652959 140656482 L1PA4 6152 - 9 3547 13322 289 3 11 632 3 1 465 0 3 406 1 0 891 0 3 183 8 13 62 2 1 578 chain 140914 chrX 155270560 + 140656482 140658141 L1PA4 6152 + 934 2596 26004 32 13 14 257 1 0 197 0 1 423 0 2 736 chain 42087 chrX 155270560 + 140661849 140663138 LTR19-int 1103 - 43 1007 66511 13 3 1 12 4 2 10 33 16 6 1 0 25 2 0 5 28 17 13 1 0 18 1 0 13 1 0 4 2 0 5 16 3 20 41 16 33 1 0 6 2 0 16 5 2 10 1 0 8 92 5 59 78 69 8 1 0 15 8 8 27 14 0 19 4 0 83 1 0 40 6 1 88 8 0 41 99 68 34 30 0 10 39 8 55 1 0 17 1 0 7 17 0 28 chain 17779 chrX 155270560 + 140664777 140665008 LTR19A 502 - 272 502 133486 193 4 3 34 chain 17763 chrX 155270560 + 140685662 140685907 LTR19A 502 + 0 278 133537 34 4 3 184 0 37 12 3 0 8 chain 46017 chrX 155270560 + 140687339 140688827 LTR19-int 1103 + 43 1060 62029 5 1 0 14 2 0 7 1 0 17 1 0 13 141 0 25 17 0 7 1 0 17 1 0 55 39 8 10 30 0 34 99 68 41 8 0 88 6 1 40 1 0 83 4 0 19 14 0 50 1 0 8 1 8 10 19 0 18 30 33 59 34 5 8 59 0 10 5 2 16 2 0 6 1 0 33 41 16 20 16 3 5 2 0 4 1 0 14 1 0 17 1 0 13 28 17 5 2 0 25 1 0 6 33 16 13 4 2 9 3 1 13 chain 63840 chrX 155270560 + 140690296 140691080 L1PA5 6144 - 14 775 51083 133 7 8 383 25 1 236 chain 18630 chrX 155270560 + 140697947 140698202 MER50 708 - 464 708 131137 140 0 1 46 20 8 49 chain 76695 chrX 155270560 + 140717133 140718179 MER11C 1089 + 0 1064 45126 217 0 1 29 0 9 61 0 4 63 2 1 161 57 58 86 1 5 4 1 0 38 0 1 125 0 1 56 1 0 144 chain 300221 chrX 155270560 + 140766702 140770245 L1PA5 6144 - 7 3546 13413 135 7 5 6 0 2 327 0 3 372 3 1 118 14 9 36 2 1 126 0 2 129 1 0 537 1 0 891 0 3 264 1 0 12 6 5 555 chain 136438 chrX 155270560 + 140770245 140771902 L1PA5 6144 + 927 2589 26756 32 13 14 459 0 1 418 0 2 150 5 6 580 chain 42400 chrX 155270560 + 140775622 140777087 LTR19-int 1103 - 43 1034 66148 13 3 1 12 4 2 16 27 10 6 1 0 25 2 0 5 28 17 13 1 0 18 1 0 13 1 0 4 2 0 5 16 3 20 41 16 33 1 0 6 2 0 16 5 2 10 1 0 8 99 5 59 78 69 8 1 0 15 8 8 27 14 0 19 4 0 83 1 0 40 6 1 88 8 0 41 99 68 34 30 0 10 51 20 43 1 0 17 1 0 7 17 0 25 141 0 13 1 0 17 chain 13025 chrX 155270560 + 140778549 140778718 LTR19A 502 - 224 427 148162 8 3 0 12 0 37 146 chain 279228 chrX 155270560 + 140790848 140794077 L1PA5 6144 - 3 3227 14683 618 1 0 4 0 1 223 0 4 532 8 0 411 0 4 1420 5 0 7 chain 22102 chrX 155270560 + 140795441 140795775 THE1B 368 - 14 361 119771 41 4 2 4 0 1 131 19 18 90 8 23 37 chain 122579 chrX 155270560 + 140795787 140797319 THE1B-int 1605 - 5 1567 30197 12 0 1 84 0 1 155 0 1 890 1 26 181 0 1 79 0 1 130 chain 39281 chrX 155270560 + 140804544 140804985 L1PA5 6144 - 6 447 70350 441 chain 7258 chrX 155270560 + 140805180 140805272 MLT1A1 405 - 23 115 175722 92 chain 5323 chrX 155270560 + 140813299 140813367 MER58A 224 - 24 92 191795 68 chain 10463 chrX 155270560 + 140816002 140816246 AluSp 311 - 18 156 158420 118 112 6 14 chain 203174 chrX 155270560 + 140833006 140835243 L1PA3long 6157 - 0 2241 18981 843 0 4 1394 chain 13531 chrX 155270560 + 140858244 140858399 L1PA2 6032 - 1 156 146238 155 chain 12388 chrX 155270560 + 140884124 140884263 L1PA6 6164 + 6023 6162 150677 139 chain 420746 chrX 155270560 + 140887029 140891757 L1PA4 6152 - 9 4732 9519 12 1 0 359 0 1 2127 0 2 465 2 0 12 1 0 1036 4 0 709 chain 71172 chrX 155270560 + 140911446 140912242 L1PA5 6144 - 5 801 47859 796 chain 115429 chrX 155270560 + 140912270 140913516 L1PA2 6032 - 1 1247 32632 1246 chain 3400 chrX 155270560 + 140918836 140918896 MLT1D 503 + 440 501 217068 35 8 9 17 chain 20776 chrX 155270560 + 140955058 140955303 LTR19B 566 + 194 443 124696 80 0 4 165 chain 44356 chrX 155270560 + 140960803 140961380 LTR19B 566 - 0 566 63746 54 4 5 333 0 5 9 28 11 149 chain 25681 chrX 155270560 + 140971864 140972315 MLT2A2 560 + 0 560 101369 48 0 1 131 2 0 16 51 49 47 1 99 11 0 11 45 16 31 10 13 0 6 0 1 54 chain 418530 chrX 155270560 + 140972315 140977904 HERVL-int 5654 + 0 5558 9572 217 11 14 219 0 275 193 2 1 206 311 0 83 3 0 170 10 7 94 0 1 257 0 4 197 0 1 271 36 0 498 0 4 111 0 1 115 0 7 685 7 28 88 6 9 1007 1 10 452 1 0 144 5 0 62 1 0 53 1 2 72 chain 3884 chrX 155270560 + 140977940 140977981 MLT2A2 560 + 519 560 209119 41 chain 98115 chrX 155270560 + 141073610 141074867 L1PA8 5853 - 6 1251 37246 87 1 0 19 2 1 47 1 0 14 2 1 70 2 0 44 1 0 346 0 1 122 2 1 87 6 1 22 2 0 56 3 2 81 0 3 240 chain 19912 chrX 155270560 + 141084325 141084550 L1P3 4156 - 3928 4153 127427 225 chain 18172 chrX 155270560 + 141097340 141097596 L1PA8 5853 - 3 253 132401 89 2 1 19 2 1 48 1 0 13 1 0 71 2 0 8 chain 13014 chrX 155270560 + 141099226 141099590 THE1D 372 + 20 372 148191 33 103 88 28 26 31 25 31 30 85 1 0 32 chain 19632 chrX 155270560 + 141099593 141099828 THE1D-int 1627 + 0 236 128308 13 0 1 222 chain 15637 chrX 155270560 + 141116034 141116234 MSTA-int 1630 + 1431 1630 139476 84 1 0 115 chain 9636 chrX 155270560 + 141123135 141123281 L1M3 994 - 629 774 162414 64 16 15 66 chain 14508 chrX 155270560 + 141124712 141124887 L1PA8 5853 - 0 172 142866 93 1 0 16 1 0 56 1 0 7 chain 4658 chrX 155270560 + 141127469 141127525 MSTA-int 1630 - 8 64 198984 56 chain 44012 chrX 155270560 + 141129689 141130218 LTR10F 562 - 0 562 64191 301 0 31 190 0 2 38 chain 9614 chrX 155270560 + 141130278 141130446 MSTA 426 - 227 412 162514 6 7 0 45 24 48 86 chain 24850 chrX 155270560 + 141141086 141141442 L1PB2 3958 - 120 471 105627 62 2 1 22 2 0 74 1 0 62 1 0 60 0 4 6 6 2 58 chain 46625 chrX 155270560 + 141143539 141144071 L1PA5 6144 - 2 529 61522 7 4 0 324 1 0 196 chain 27266 chrX 155270560 + 141149272 141149590 L1PA5 6144 + 5830 6144 95382 61 2 0 248 2 0 5 chain 15041 chrX 155270560 + 141155714 141155880 L1PA4 6152 + 5984 6151 141197 37 0 1 129 chain 14064 chrX 155270560 + 141177460 141177615 L1PA4 6152 + 5981 6136 144338 155 chain 19169 chrX 155270560 + 141188954 141189168 L1PA4 6152 + 5929 6143 129618 214 chain 30505 chrX 155270560 + 141198435 141198790 L1PA5 6144 + 5789 6144 83415 355 chain 195465 chrX 155270560 + 141209198 141211388 L1PA5 6144 - 2274 4467 19538 193 1 3 1270 0 1 726 chain 199093 chrX 155270560 + 141211388 141213637 L1PA5 6144 + 3876 6132 19275 32 0 1 1384 1 8 584 1 0 247 chain 13682 chrX 155270560 + 141227591 141227960 MSTA 426 + 14 426 145663 50 64 88 47 2 0 5 4 0 8 40 45 30 43 63 76 chain 27332 chrX 155270560 + 141238147 141238530 MER50 708 + 50 696 95163 5 2 0 46 9 10 13 0 3 83 0 261 13 1 0 64 0 1 147 chain 83446 chrX 155270560 + 141251114 141252074 L1PA4 6152 + 5169 6140 42141 129 0 4 288 7 13 405 0 1 131 chain 42231 chrX 155270560 + 141258460 141258923 L1PA3long 6157 - 0 460 66362 15 3 0 445 chain 92486 chrX 155270560 + 141258924 141259947 L1PA3long 6157 + 4702 5713 38820 330 8 0 617 4 0 64 chain 9482 chrX 155270560 + 141310663 141310799 MER30 238 - 49 202 163152 58 8 25 70 chain 39221 chrX 155270560 + 141314056 141314549 LTR10F 562 - 0 562 70429 62 3 2 265 0 70 163 chain 247228 chrX 155270560 + 141315431 141318593 HERVH-int 3825 + 751 3825 16383 28 1 0 11 10 0 5 47 0 43 0 3 345 6 3 34 15 0 208 9 0 141 5 0 159 0 1 47 0 1 306 4 9 335 19 18 311 0 5 36 11 0 176 18 18 21 1 0 810 chain 31826 chrX 155270560 + 141320412 141320834 LTR7B 505 + 0 495 81126 108 0 10 57 15 77 26 0 2 85 1 0 31 0 1 44 2 1 53 chain 8724 chrX 155270560 + 141320847 141320949 MER41B 635 - 507 609 167073 102 chain 3671 chrX 155270560 + 141324248 141324288 THE1B-int 1605 + 112 152 212383 40 chain 14799 chrX 155270560 + 141348758 141348938 LTR2B 499 - 116 300 141938 151 0 4 29 chain 438588 chrX 155270560 + 141354168 141361231 HERVE_a-int 7009 + 140 6990 9094 16 3 0 28 10 8 28 43 0 36 2 0 9 3 1 14 93 80 18 1 0 28 10 8 20 7 6 42 2 1 21 1 0 54 8 7 26 2 1 98 1 0 12 2 1 14 2 1 33 1 0 10 1 0 35 25 23 24 10 9 16 8 7 34 1 0 28 14 12 68 2 1 33 1 0 29 15 13 11 1 0 52 1 0 21 1 0 17 1 0 5 19 14 11 2 1 10 2 1 16 1 0 22 36 30 56 5 3 57 2 1 21 2 1 16 1 0 115 2 1 12 6 5 21 41 37 7 1 0 22 8 7 33 1 0 37 1 0 62 1 0 36 1 0 8 1 0 35 1 0 43 1 0 24 1 0 15 1 0 21 5 4 10 2 1 41 0 1 52 3 2 25 6 4 29 13 8 17 19 16 119 53 47 26 2 1 169 1 0 404 1 0 86 1 0 499 1 0 532 1 0 599 7 5 70 1 0 5 1 2 457 1 2 45 0 2 33 9 0 110 3 2 24 1 0 7 7 6 70 216 210 118 4 5 99 2 0 102 1 0 13 1 0 6 1 0 56 19 16 13 11 10 73 5 3 83 7 6 44 1 0 44 1 0 32 1 0 8 1 0 11 8 7 5 2 0 7 1 0 37 6 5 14 1 0 46 1 0 7 2 1 25 1 8 52 1 0 11 4 0 26 3 0 54 3 1 25 1 0 32 1 0 6 17 14 24 2 0 34 4 2 15 33 25 23 chain 36401 chrX 155270560 + 141361263 141361748 LTR2B 499 + 0 480 74367 15 9 2 211 0 4 209 5 3 36 chain 93915 chrX 155270560 + 141373355 141374370 L1PA3long 6157 - 0 1015 38376 1015 chain 124956 chrX 155270560 + 141385146 141386596 LTR12C 1709 - 0 1709 29408 168 0 102 211 0 4 27 5 1 78 3 1 5 1 0 121 0 160 831 chain 20862 chrX 155270560 + 141392536 141392901 THE1B 368 - 0 368 124420 67 1 0 62 1 0 7 1 0 18 4 0 13 0 3 16 14 13 52 5 6 25 32 39 47 chain 6188 chrX 155270560 + 141403497 141403570 MLT1E1A 663 + 563 636 183677 73 chain 7988 chrX 155270560 + 141410902 141411001 LTR5B 1012 - 0 101 171124 8 0 2 91 chain 20950 chrX 155270560 + 141415967 141416345 THE1D 372 + 0 372 124107 50 37 28 102 30 28 30 3 9 80 14 13 32 chain 557866 chrX 155270560 + 141425909 141431936 L1PA2 6032 + 0 6027 513 482 0 1 3078 1 0 2466 chain 68798 chrX 155270560 + 141439218 141440080 LTR12 884 + 0 884 48896 25 1 0 30 0 41 240 24 8 34 2 0 506 chain 20444 chrX 155270560 + 141449012 141449248 L1PA7 6471 - 2 238 125772 236 chain 20503 chrX 155270560 + 141449997 141450228 L1PA7 6471 - 19 250 125619 231 chain 2863 chrX 155270560 + 141458080 141458128 MER82 654 - 558 607 227640 27 7 8 14 chain 66088 chrX 155270560 + 141465231 141465945 L1PA3long 6157 + 5440 6154 50060 714 chain 9149 chrX 155270560 + 141466919 141467027 MSTD 398 + 0 108 164811 108 chain 544680 chrX 155270560 + 141473382 141479401 L1PA3long 6157 - 0 6151 2113 12 0 3 140 1 0 688 0 4 1609 4 0 438 2 1 264 0 1 2088 0 128 328 0 1 299 0 1 146 chain 240502 chrX 155270560 + 141492121 141495284 L1PA8 5853 + 2694 5847 16742 60 13 69 227 0 3 168 2 0 284 105 17 340 12 11 181 0 4 48 1 4 160 1 2 359 5 1 364 3 1 40 0 1 31 0 4 448 1 0 43 1 0 44 1 22 49 1 0 9 2 1 51 2 1 19 2 1 86 chain 8886 chrX 155270560 + 141492881 141492980 L1PA8 5853 - 924 1023 165231 99 chain 122441 chrX 155270560 + 141500010 141502021 L1MA1 4479 + 2217 4172 30237 255 1 5 32 1 2 38 1 0 40 22 21 46 38 37 54 31 3 21 2 0 33 2 1 57 1 0 10 1 0 76 1 2 8 2 0 9 0 1 17 2 0 108 0 2 63 2 0 52 5 6 23 0 4 8 1 0 4 0 4 8 14 5 117 3 0 131 2 0 71 14 19 66 5 3 35 1 0 25 2 0 16 1 0 74 1 0 16 2 0 14 1 0 30 3 4 55 8 4 126 1 0 20 12 10 32 22 16 16 chain 40748 chrX 155270560 + 141508438 141508931 L1PA7 6471 - 1 495 68243 154 7 8 332 chain 30086 chrX 155270560 + 141511161 141511573 LTR7 482 - 0 482 84535 170 1 0 4 0 1 17 0 1 9 7 37 18 0 1 109 8 46 69 chain 280284 chrX 155270560 + 141512850 141516332 HERVH-int 3825 - 11 3825 14628 372 33 34 22 7 8 11 14 14 1254 8 13 76 0 4 366 0 3 162 1 0 16 1 2 25 9 0 173 0 19 96 7 11 292 0 3 43 3 8 7 2 0 15 0 2 12 48 356 62 1 0 152 1 0 5 10 0 176 chain 28167 chrX 155270560 + 141516345 141516747 LTR7 482 - 11 482 92410 88 1 0 16 1 2 79 1 0 1 1 0 7 4 35 18 0 1 23 1 0 6 0 1 79 8 46 29 0 1 39 chain 29955 chrX 155270560 + 141518935 141519389 LTR7B 505 + 0 498 84952 108 0 10 65 7 69 28 29 0 82 1 0 34 0 1 7 0 2 35 14 13 44 chain 41271 chrX 155270560 + 141521759 141522272 L1PA8 5853 + 5344 5850 67572 220 1 0 46 2 0 69 1 0 11 1 0 50 2 1 19 1 0 90 chain 124110 chrX 155270560 + 141551539 141553025 L1PA7 6471 - 6 1488 29660 6 3 0 306 0 1 13 2 1 469 0 1 45 3 1 314 0 1 126 1 0 198 chain 52146 chrX 155270560 + 141553025 141553650 L1PA7 6471 + 4330 4954 57482 414 4 3 207 chain 68285 chrX 155270560 + 141553941 141554718 L1PA5 6144 + 5367 6144 49129 777 chain 60773 chrX 155270560 + 141556857 141557802 L1PB1 5432 + 4513 5423 52437 115 0 1 175 0 2 6 3 0 290 1 0 15 3 0 21 1 0 8 1 0 10 18 12 52 2 1 16 1 0 18 4 5 21 1 0 15 1 0 4 3 0 5 38 27 14 2 0 24 1 0 21 1 0 11 5 4 7 1 0 10 chain 4827 chrX 155270560 + 141565564 141565623 MER5A1 166 + 7 66 197049 59 chain 562766 chrX 155270560 + 141565635 141571654 L1HS 6032 + 5 6031 277 1316 0 3 4650 0 4 53 chain 63073 chrX 155270560 + 141576949 141577745 L1PA4 6152 - 9 781 51417 87 87 61 323 0 2 299 chain 76065 chrX 155270560 + 141584357 141585247 L1PA7 6471 - 10 899 45438 840 1 0 49 chain 42468 chrX 155270560 + 141589010 141589478 L1PA3long 6157 - 0 470 66053 148 0 2 320 chain 116571 chrX 155270560 + 141602086 141603621 THE1B-int 1605 - 7 1605 32267 441 12 14 113 1 0 333 42 38 144 0 1 53 0 64 366 0 1 30 chain 81774 chrX 155270560 + 141605038 141606043 L1PA7 6471 - 3 1010 42858 7 5 0 76 0 7 68 4 5 684 2 1 159 chain 21507 chrX 155270560 + 141608284 141608570 THE1C-int 1605 - 6 286 122121 197 13 7 76 chain 36735 chrX 155270560 + 141651469 141651907 LTR7 482 + 0 470 73903 193 0 1 36 0 31 104 1 2 17 1 0 86 chain 52157 chrX 155270560 + 141666774 141667466 MER11A 1151 + 413 1148 57522 15 15 16 94 5 6 203 3 4 84 17 48 33 0 9 47 1 0 11 0 1 164 chain 71513 chrX 155270560 + 141673189 141673996 L1PA4 6152 + 5353 6152 47690 561 1 0 97 7 0 141 chain 44422 chrX 155270560 + 141677657 141678161 L1PA4 6152 - 9 511 63669 325 1 0 142 1 0 35 chain 31460 chrX 155270560 + 141691421 141692014 L1PREC2 3366 - 331 881 81720 25 6 4 35 37 20 30 3 1 14 6 1 14 62 46 37 1 0 28 4 1 27 2 0 34 0 1 89 1 4 28 0 1 110 chain 80648 chrX 155270560 + 141693978 141694976 LTR13 1007 - 0 1007 43323 341 0 10 157 1 5 50 14 7 32 23 24 179 0 1 201 chain 18715 chrX 155270560 + 141711770 141712159 MSTA 426 - 0 416 130914 74 4 0 34 10 18 28 0 2 28 38 36 38 63 86 72 chain 68651 chrX 155270560 + 141718516 141719325 L1PA6 6164 + 5293 6152 48960 29 1 0 469 3 54 307 chain 104342 chrX 155270560 + 141730334 141731764 L1PB1 5432 - 1054 2492 35658 40 12 16 96 16 21 172 4 0 310 12 14 136 1 0 373 1 2 132 6 7 119 chain 68720 chrX 155270560 + 141736117 141736874 L1PA4 6152 + 5386 6143 48934 757 chain 247272 chrX 155270560 + 141759672 141763534 L1PA7 6471 - 2 6390 16379 367 0 1 70 5 32 360 0 1 17 1 0 249 343 0 22 0 1 394 0 1 42 6 11 231 4 8 99 325 0 186 0 3147 6 2 1 488 13 21 254 0 1 51 1 0 35 5 6 286 chain 7293 chrX 155270560 + 141763659 141763746 L1P3 4156 + 3 90 175485 87 chain 20279 chrX 155270560 + 141769988 141770260 AluSp 311 - 4 273 126280 61 4 0 93 14 15 100 chain 115083 chrX 155270560 + 141770729 141772028 L1PA5 6144 - 4 1303 32762 10 1 0 817 0 1 471 chain 16603 chrX 155270560 + 141778873 141779103 L1PA16 3655 + 2699 2928 136659 204 9 8 17 chain 18421 chrX 155270560 + 141785820 141786179 L1PB3 3668 + 3248 3566 131711 43 1 0 67 1 0 18 36 15 56 7 8 23 20 4 21 1 0 20 8 6 37 chain 10213 chrX 155270560 + 141806139 141806265 MER11A 1151 - 1006 1140 159559 60 0 8 66 chain 301340 chrX 155270560 + 141807114 141810932 L1PA7 6471 + 2427 6455 13356 69 0 1 129 0 1 14 45 6 195 1 3 260 9 1 767 3 1 63 4 0 66 2 286 429 0 1 660 0 1 233 0 3 11 49 15 67 0 1 8 0 3 365 1 0 4 0 1 364 chain 168469 chrX 155270560 + 141810954 141813673 L1PB1 5432 + 3040 5413 22225 270 11 12 375 13 19 18 8 0 75 309 0 153 0 1 21 18 20 419 0 1 40 8 12 96 1 4 173 0 23 331 55 11 33 17 12 10 7 5 45 1 0 18 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 9 chain 45221 chrX 155270560 + 141816548 141817061 MER9a1 513 - 0 513 62805 513 chain 26963 chrX 155270560 + 141831056 141831421 THE1B 368 - 0 366 96397 73 12 11 110 3 2 127 0 5 21 2 0 17 chain 145822 chrX 155270560 + 141832405 141834074 LTR12C 1709 - 0 1709 25203 481 1 4 107 2 0 6 1 0 234 0 40 837 chain 45426 chrX 155270560 + 141837820 141838372 L1PA7 6471 - 5 559 62565 19 0 1 314 0 1 219 chain 41440 chrX 155270560 + 141847157 141847761 L1PB3 3668 - 2072 2677 67359 13 0 2 77 13 11 8 0 2 28 1 0 4 0 1 44 0 2 7 1 0 156 0 1 5 24 22 4 1 0 218 chain 516862 chrX 155270560 + 141851623 141859019 L1PA7 6471 - 1 6466 5502 12 6 5 824 0 5 13 8 0 937 1 5 803 53 35 274 4 8 174 0 1 266 39 22 172 0 3 45 12 13 377 596 2 445 3 2 232 29 26 319 0 1 133 1 2 21 309 3 667 13 13 207 1 0 9 12 8 147 0 2 232 chain 50023 chrX 155270560 + 141855658 141856239 LTR14C 587 - 6 587 59000 581 chain 25417 chrX 155270560 + 141857432 141857725 L1PA5 6144 - 2 291 102605 7 4 0 282 chain 16765 chrX 155270560 + 141873904 141874084 L1PA4 6152 - 7 187 136211 180 chain 282803 chrX 155270560 + 141878065 141881299 L1PA5 6144 - 3 3204 14486 109 1 0 37 1 2 458 0 1 156 2 5 1292 1 0 4 0 1 326 7 8 694 41 3 105 chain 29205 chrX 155270560 + 141901339 141901649 AluYa5 310 - 0 310 88021 310 chain 19879 chrX 155270560 + 141917608 141917835 L1PA4 6152 + 5916 6143 127551 4 0 1 4 1 0 218 chain 43239 chrX 155270560 + 141918096 141918589 L1PA3long 6157 - 0 494 65128 144 1 0 4 6 8 338 chain 30256 chrX 155270560 + 141925377 141925841 LTR19A 502 - 0 502 84038 5 0 1 30 7 8 145 1 2 67 57 92 152 chain 7546 chrX 155270560 + 141934319 141934633 L1M1 2793 - 1810 2129 173896 75 206 211 33 chain 42950 chrX 155270560 + 141936102 141936670 LTR9B 643 + 0 567 65478 201 10 9 219 1 2 61 7 6 69 chain 53013 chrX 155270560 + 141938577 141939445 L1PB1 5432 + 4411 5282 57010 5 1 0 183 6 10 91 3 8 4 1 0 77 17 21 195 1 0 76 63 63 13 6 2 9 2 0 49 25 23 18 7 8 16 chain 20482 chrX 155270560 + 141959142 141959477 THE1B 368 + 16 348 125679 21 6 18 79 4 0 32 7 6 18 2 0 59 1 2 60 6 3 20 6 0 14 chain 37335 chrX 155270560 + 141962835 141963245 L1PA5 6144 + 5728 6138 73045 410 chain 4151 chrX 155270560 + 141972717 141972798 MLT2B1 522 + 0 89 205234 32 18 26 31 chain 8843 chrX 155270560 + 141978796 141978892 L1PA3long 6157 - 21 117 166419 96 chain 56910 chrX 155270560 + 141979941 141980577 L1PA4 6152 - 680 1320 54588 170 2 6 464 chain 61008 chrX 155270560 + 141980577 141981263 L1PA4 6152 + 5470 6152 52329 287 5 0 383 0 1 11 chain 127383 chrX 155270560 + 141986553 141987997 L1PA4 6152 + 4708 6152 28724 590 0 4 839 4 0 11 chain 37593 chrX 155270560 + 141990120 141990604 MLT2A2 560 - 65 560 72694 82 3 14 399 chain 13356 chrX 155270560 + 141992016 141992190 MER30 238 - 0 203 146859 45 0 3 60 1 27 68 chain 249639 chrX 155270560 + 141995687 141998423 L1PA3long 6157 - 1148 3891 16273 1866 4 11 866 chain 101345 chrX 155270560 + 141998423 141999565 L1PA3long 6157 + 5025 6157 36435 386 2 1 85 4 0 401 1 0 237 4 0 22 chain 3502 chrX 155270560 + 142004187 142004224 MLT2A1 477 + 440 477 215345 37 chain 450269 chrX 155270560 + 142004225 142009867 HERVL-int 5654 + 1 5647 8759 361 6 7 223 11 17 23 1 0 23 1 0 72 5 7 392 1 0 177 0 1 111 0 1 182 0 1 123 3 1 188 0 2 252 4 0 4 0 1 227 9 0 265 0 2 125 5 17 117 1 0 67 0 1 958 4 0 264 0 1 71 0 1 444 2 0 49 11 12 311 0 2 121 10 4 38 4 0 163 0 1 151 5 8 57 chain 31552 chrX 155270560 + 142009874 142010558 MLT2A1 477 + 0 477 81561 25 7 12 103 0 1 24 5 9 91 0 1 137 255 37 37 chain 12584 chrX 155270560 + 142020060 142020269 Tigger5 388 + 184 387 149907 51 1 0 25 2 0 11 1 0 17 27 25 74 chain 8719 chrX 155270560 + 142021366 142021467 L1PA4 6152 - 0 106 167092 6 0 5 95 chain 4003 chrX 155270560 + 142038577 142038623 L1PA11 4918 - 894 940 207357 46 chain 174790 chrX 155270560 + 142041043 142043166 L1PA7 6471 - 2 2136 21496 199 0 1 38 7 5 605 1 0 11 0 1 18 0 6 232 5 0 679 0 8 56 1 2 200 0 1 29 0 1 42 chain 112252 chrX 155270560 + 142048291 142049836 THE1B-int 1605 - 12 1597 33599 102 0 1 371 3 4 360 6 0 78 4 0 6 1 10 79 1 24 93 0 64 21 4 3 92 5 11 120 53 0 146 chain 130339 chrX 155270560 + 142058846 142060487 LTR12C 1709 - 0 1709 28009 68 1 3 96 0 102 212 0 4 81 3 4 21 3 1 6 1 0 54 0 41 179 79 0 837 chain 4796 chrX 155270560 + 142059575 142059650 LTR12C 1709 - 597 672 110084 75 chain 197477 chrX 155270560 + 142061405 142063694 L1PA7 6471 + 4151 6450 19392 520 0 4 133 0 2 803 1 5 832 chain 25667 chrX 155270560 + 142075064 142075416 THE1C 375 + 0 361 101418 184 4 5 28 8 16 16 0 1 70 1 0 41 chain 28741 chrX 155270560 + 142090712 142091089 L1PA7 6471 + 6059 6402 90165 191 0 1 61 1 2 79 36 0 9 chain 2571 chrX 155270560 + 142091089 142091118 L1PA7 6471 + 6438 6467 232224 29 chain 24678 chrX 155270560 + 142091769 142092036 L1PA2 6032 - 0 267 106565 267 chain 20022 chrX 155270560 + 142114342 142114641 LTR46-int 301 - 2 290 127079 30 15 7 110 2 1 54 0 1 4 1 0 47 1 0 12 1 0 22 chain 28012 chrX 155270560 + 142132248 142132601 THE1A 353 + 0 353 92959 26 0 1 82 2 1 243 chain 17016 chrX 155270560 + 142132899 142133086 L1PA4 6152 + 5948 6135 135549 187 chain 20400 chrX 155270560 + 142139727 142140328 L1M1 2793 - 1487 2064 125895 37 6 0 18 4 0 32 10 13 27 1 0 38 81 82 25 1 0 27 37 36 55 26 23 43 34 31 17 30 27 11 8 6 14 4 0 15 chain 7408 chrX 155270560 + 142187190 142187441 MLT1A 405 - 52 337 174724 45 65 73 14 70 96 57 chain 14312 chrX 155270560 + 142198603 142198772 MLT2A1 477 + 0 169 143523 169 chain 48786 chrX 155270560 + 142198772 142199360 HERVL-int 5654 + 3178 3767 59886 223 0 1 365 chain 40594 chrX 155270560 + 142199652 142200142 MER9a1 513 + 0 513 68450 200 10 11 33 1 23 246 chain 27432 chrX 155270560 + 142215881 142216236 THE1A 353 + 0 353 94873 107 4 3 92 1 0 151 chain 32673 chrX 155270560 + 142241733 142242089 L1PA3long 6157 - 1322 1678 79445 356 chain 120780 chrX 155270560 + 142242089 142243406 L1PA3long 6157 + 4837 6156 30765 1312 0 2 5 chain 37813 chrX 155270560 + 142270201 142270706 MLT2A2 560 + 1 560 72395 121 0 21 37 1 0 175 0 23 14 0 1 4 8 18 145 chain 46497 chrX 155270560 + 142295387 142295909 L1PA4 6152 + 5620 6143 61599 488 0 1 34 chain 48887 chrX 155270560 + 142298513 142299070 L1PA5 6144 - 6 562 59815 106 1 0 450 chain 109883 chrX 155270560 + 142315714 142317041 LTR12C 1709 - 0 1709 34242 167 0 102 212 0 4 106 3 1 5 1 0 99 0 278 298 0 1 436 chain 14681 chrX 155270560 + 142322795 142323097 L1M1 2793 + 2162 2463 142316 26 31 32 38 1 0 11 16 20 6 3 0 116 25 23 29 chain 26256 chrX 155270560 + 142324108 142324412 AluYf4 310 + 0 302 98997 291 2 0 11 chain 256538 chrX 155270560 + 142331840 142334746 L1PA5 6144 - 12 2974 15904 155 6 57 625 1 5 1350 0 1 769 chain 27858 chrX 155270560 + 142335672 142336026 THE1A 353 + 0 353 93498 110 1 0 243 chain 24237 chrX 155270560 + 142341829 142342362 MLT2A1 477 + 0 477 109013 169 4 1 11 2 0 23 0 1 27 10 17 61 173 74 13 1 41 39 chain 14011 chrX 155270560 + 142404061 142404386 L1PB1 5432 - 23 318 144541 5 1 0 13 1 0 21 2 1 23 2 0 14 50 36 15 1 0 44 1 0 18 1 0 45 38 31 5 1 0 24 chain 247332 chrX 155270560 + 142404410 142407729 L1PBa1 4058 - 769 4048 16378 795 0 2 6 9 7 20 7 0 370 0 7 7 1 3 275 0 2 36 2 0 90 1 0 218 2 0 235 9 10 103 17 0 277 15 7 122 89 80 16 0 1 42 5 8 122 4 2 18 5 1 183 2 1 4 0 1 157 17 14 11 2 1 25 chain 17801 chrX 155270560 + 142416166 142416463 THE1B 368 + 0 302 133402 106 7 8 55 1 0 21 17 24 10 10 9 9 2 1 59 chain 23996 chrX 155270560 + 142418450 142418746 L1M1 2793 + 1368 1664 110351 296 chain 17586 chrX 155270560 + 142425917 142426132 L1PA7 6471 - 3 215 134034 6 3 0 206 chain 15058 chrX 155270560 + 142428403 142428573 L1PA4 6152 - 776 946 141145 170 chain 61508 chrX 155270560 + 142428573 142429276 L1PA4 6152 + 5437 6140 52112 703 chain 24088 chrX 155270560 + 142437642 142438025 THE1C 375 - 0 375 109812 26 1 0 19 0 1 181 1 0 28 20 12 17 27 28 63 chain 208765 chrX 155270560 + 142439761 142442104 L1HS 6032 - 2305 4648 18584 2343 chain 207449 chrX 155270560 + 142442104 142444390 L1PA3long 6157 + 3868 6157 18669 591 0 2 1127 0 1 568 chain 13968 chrX 155270560 + 142449408 142449580 THE1D-int 1627 - 9 177 144684 68 5 1 99 chain 18959 chrX 155270560 + 142465158 142465472 THE1D 372 - 42 370 130206 84 33 40 12 27 34 158 chain 55710 chrX 155270560 + 142492548 142493162 L1PA3long 6157 - 4 618 55300 614 chain 19925 chrX 155270560 + 142493162 142493381 L1PA3long 6157 + 5310 5529 127383 219 chain 5645 chrX 155270560 + 142509882 142510000 L1MA6 2487 - 501 625 188609 37 1 2 20 1 0 5 6 9 14 8 11 26 chain 19457 chrX 155270560 + 142510013 142510307 L1PA8 5853 - 0 290 128797 93 1 0 19 2 1 31 0 1 13 0 1 6 30 28 52 2 0 45 chain 15303 chrX 155270560 + 142510851 142511018 L1PA6 6164 - 278 445 140483 167 chain 198728 chrX 155270560 + 142527999 142530415 L1PA7 6471 - 15 3210 19302 353 2 0 6 1 4 85 0 1 227 0 776 19 0 1 35 3 0 949 0 1 170 1 0 247 0 2 51 1 0 7 8 9 13 1 2 237 chain 14774 chrX 155270560 + 142532334 142532654 L1MA4 2864 - 72 354 142015 27 2 0 25 8 2 14 80 49 13 5 7 140 1 0 5 chain 20104 chrX 155270560 + 142545872 142546105 L1PA2 6032 + 5589 5822 126810 233 chain 16607 chrX 155270560 + 142557734 142558098 THE1C 375 - 0 375 136648 18 3 0 5 0 3 33 14 9 58 65 76 30 1 5 51 26 27 60 chain 18388 chrX 155270560 + 142568569 142568806 L1PA13 3608 - 1436 1673 131824 178 1 0 5 0 1 53 chain 31984 chrX 155270560 + 142568864 142569303 MLT2A1 477 - 0 477 80887 12 1 2 43 8 41 205 1 5 26 0 1 46 1 0 96 chain 5611 chrX 155270560 + 142593389 142593456 MSTB 430 + 0 67 188967 67 chain 24138 chrX 155270560 + 142597179 142597718 LTR46 455 + 0 455 109532 29 4 5 125 2 0 5 157 68 124 44 50 49 chain 20214 chrX 155270560 + 142604411 142604681 LTR46-int 301 + 39 299 126489 6 1 0 106 1 0 109 9 1 38 chain 27202 chrX 155270560 + 142604686 142605134 LTR46 455 + 0 455 95587 13 0 2 166 53 52 123 25 32 6 1 0 61 chain 100812 chrX 155270560 + 142609461 142610573 L1PA4 6152 - 1 1112 36556 333 1 0 778 chain 14776 chrX 155270560 + 142642481 142642655 L1PA7 6471 + 6296 6470 142013 174 chain 11481 chrX 155270560 + 142644334 142644525 MER30 238 - 9 237 154369 91 2 0 7 10 27 46 20 42 15 chain 5986 chrX 155270560 + 142648797 142648861 L1PA3long 6157 - 2 66 185380 64 chain 135065 chrX 155270560 + 142662040 142663543 L1PA4 6152 - 0 1509 27005 10 0 6 1493 chain 37617 chrX 155270560 + 142665182 142665728 MLT2A2 560 - 0 560 72665 147 0 11 9 0 1 115 6 5 53 49 52 167 chain 54967 chrX 155270560 + 142674074 142674880 MER4E1 777 - 12 777 55725 147 26 0 60 15 12 64 13 21 99 3 1 175 0 1 166 19 0 19 chain 32189 chrX 155270560 + 142681475 142681906 MLT2A1 477 - 0 477 80544 7 0 5 40 0 42 178 0 1 19 2 3 13 5 2 167 chain 31471 chrX 155270560 + 142698730 142699144 MLT2A1 477 + 15 477 81688 153 5 2 209 0 6 14 0 45 33 chain 20089 chrX 155270560 + 142728679 142729076 MLT2A2 560 - 40 560 126862 14 0 4 14 41 46 25 0 11 11 9 107 61 54 59 168 chain 12774 chrX 155270560 + 142740643 142740844 L1PA8 5853 + 5647 5853 149159 26 7 6 9 1 0 52 2 1 19 2 1 57 1 10 25 chain 17746 chrX 155270560 + 142750034 142750284 L1MA8 2339 - 2061 2308 133576 181 2 1 22 1 0 34 1 0 9 chain 30970 chrX 155270560 + 142765616 142766104 L1PA14 3548 - 63 526 82565 20 1 0 9 6 0 42 1 0 12 5 4 5 1 0 15 4 2 35 11 6 114 1 0 84 1 0 6 2 0 11 7 5 5 2 0 88 chain 18583 chrX 155270560 + 142802974 142803224 LTR46-int 301 + 58 299 131280 93 1 0 109 9 1 38 chain 331624 chrX 155270560 + 142806270 142812102 L1P3 4156 + 0 4139 12143 251 2 1 70 1 0 87 3 0 220 1 2 189 5 6 397 0 5 185 0 3 461 0 1 33 1692 0 115 1 0 612 3 1 51 3 2 578 19 17 295 0 2 523 11 8 24 chain 1633 chrX 155270560 + 142808718 142808758 LTR12C 1709 - 672 712 153921 40 chain 16127 chrX 155270560 + 142808811 142809194 LTR12C 1709 - 521 850 137979 16 19 0 13 61 104 35 78 0 161 chain 1837 chrX 155270560 + 142808875 142808920 LTR12C 1709 - 851 895 153921 21 1 0 23 chain 1919 chrX 155270560 + 142808955 142809002 LTR12C 1709 - 1008 1055 153921 47 chain 19951 chrX 155270560 + 142812275 142812524 L1PA8A 6298 + 6040 6291 127298 192 1 3 56 chain 20624 chrX 155270560 + 142830553 142830781 L1PA4 6152 + 5659 5887 125210 228 chain 21565 chrX 155270560 + 142840556 142840855 LTR12D 1347 - 1045 1347 121904 24 6 10 44 14 17 10 4 0 197 chain 535949 chrX 155270560 + 142845427 142851490 L1PA4 6152 - 25 6152 3450 483 0 10 3763 0 1 233 2 55 1582 chain 28241 chrX 155270560 + 142861603 142861994 L1MA3 4352 + 3619 4015 92142 10 2 3 95 7 8 128 0 3 149 chain 25204 chrX 155270560 + 142861995 142862515 LTR4 552 + 0 531 103712 66 21 17 22 62 42 14 2 0 4 0 1 14 34 78 19 2 0 47 19 0 12 0 4 54 7 16 121 chain 54211 chrX 155270560 + 142867644 142868421 L1PA8 5853 + 5033 5816 56220 445 5 6 80 1 0 46 2 0 8 3 7 22 37 43 50 2 1 19 1 0 56 chain 10344 chrX 155270560 + 142875941 142876052 L1PA4 6152 - 959 1070 158132 111 chain 84787 chrX 155270560 + 142876052 142876998 L1PA4 6152 + 5193 6143 41599 111 0 4 835 chain 53477 chrX 155270560 + 142885989 142886574 L1PA4 6152 + 5566 6151 56701 585 chain 37718 chrX 155270560 + 142891855 142892271 L1PA5 6144 - 13 429 72529 416 chain 16634 chrX 155270560 + 142897789 142897979 L1PA3long 6157 - 0 190 136576 190 chain 12829 chrX 155270560 + 142928776 142928917 L1PA6 6164 + 6018 6159 148932 141 chain 33911 chrX 155270560 + 142930275 142930685 L1PA6 6164 + 5755 6162 77753 395 3 0 12 chain 31935 chrX 155270560 + 142934637 142934988 L1PA3long 6157 - 0 351 80957 351 chain 42744 chrX 155270560 + 142944452 142945143 L1PA14 3548 - 107 773 65729 27 1 0 19 4 2 12 7 5 34 5 1 120 1 0 84 1 0 6 2 0 14 12 8 81 31 27 48 2 0 10 7 5 163 chain 10099 chrX 155270560 + 142945148 142945291 MER57B1 401 - 86 229 160097 74 7 0 7 0 7 55 chain 122495 chrX 155270560 + 142958074 142959640 THE1B-int 1605 + 0 1589 30224 426 0 25 139 0 1 4 1 0 84 0 3 6 1 2 266 6 0 633 chain 74773 chrX 155270560 + 142972602 142973626 MER11A 1151 + 0 1147 46123 85 0 91 54 0 4 58 3 0 34 0 2 115 0 1 94 0 1 142 7 9 131 8 41 22 15 0 37 0 1 59 6 7 97 5 6 20 0 4 32 chain 2797 chrX 155270560 + 142985984 142986016 Charlie17a 212 + 15 47 228793 32 chain 11855 chrX 155270560 + 142992780 142992916 L1PA2 6032 - 1 137 152811 136 chain 169878 chrX 155270560 + 143012510 143014438 L1PA4 6152 - 9 1978 22065 42 0 1 4 1 0 204 1 0 507 0 1 459 1 2 371 1 40 292 0 1 45 chain 41437 chrX 155270560 + 143018779 143019329 MLT2A2 560 + 0 560 67367 85 0 3 91 0 1 219 18 24 137 chain 5675 chrX 155270560 + 143029153 143029225 MER6 865 + 578 653 188334 41 0 3 31 chain 72586 chrX 155270560 + 143029572 143030488 THE1A-int 1579 + 0 949 47227 104 1 34 367 0 1 78 1 0 365 chain 24834 chrX 155270560 + 143032424 143032793 THE1C 375 - 0 373 105704 26 14 13 56 0 2 5 2 0 75 16 17 35 0 4 140 chain 122872 chrX 155270560 + 143041865 143043424 THE1A-int 1579 - 5 1579 30087 73 0 4 71 0 1 73 1 3 501 0 5 35 4 5 160 0 1 144 1 0 314 4 6 178 chain 96143 chrX 155270560 + 143073322 143074367 L1PA2 6032 - 2 1045 37783 340 1 0 518 1 0 185 chain 31910 chrX 155270560 + 143079584 143080016 MLT2A1 477 - 0 477 80996 6 0 4 41 7 41 68 4 7 135 2 6 169 chain 148740 chrX 155270560 + 143080016 143081913 HERVL-int 5654 - 0 1894 24788 218 2 1 96 0 2 108 4 3 6 27 0 95 0 2 144 0 3 71 0 3 159 6 7 420 0 6 158 5 8 164 1 0 149 8 15 56 chain 18114 chrX 155270560 + 143096824 143097129 L1P3 4156 - 43 340 132553 6 2 0 61 35 36 165 19 12 17 chain 10882 chrX 155270560 + 143097187 143097502 THE1D 372 - 61 370 156653 63 123 125 44 7 9 8 1 0 5 13 4 51 chain 12134 chrX 155270560 + 143105807 143106030 Tigger3a 397 - 64 255 151681 21 6 7 105 44 7 13 0 4 34 chain 28702 chrX 155270560 + 143122136 143122441 AluYa5 310 - 5 310 90322 305 chain 89437 chrX 155270560 + 143130050 143131423 L1PB2 3958 + 2464 3814 39828 37 16 16 403 9 8 198 5 6 5 1 0 70 3 0 5 1 5 92 2 0 45 8 7 12 14 8 58 2 0 14 5 0 92 6 5 67 1 0 62 1 0 40 41 38 18 1 0 39 chain 24370 chrX 155270560 + 143136270 143136563 L1PA6 6164 - 4 294 108259 6 2 0 7 1 0 277 chain 160853 chrX 155270560 + 143152367 143154251 L1PA6 6164 - 4 1899 23220 615 0 8 133 1 0 82 0 4 1053 chain 24362 chrX 155270560 + 143166934 143167255 AluY 311 + 0 308 108306 47 12 10 70 1 2 22 1 0 110 7 0 20 4 0 27 chain 23786 chrX 155270560 + 143173576 143173874 AluSp 311 + 2 297 111553 280 3 0 15 chain 59679 chrX 155270560 + 143174174 143174887 LTR30 714 - 0 714 53002 250 16 17 447 chain 28540 chrX 155270560 + 143190343 143190716 THE1C 375 - 2 375 90997 157 1 4 87 3 0 125 chain 28684 chrX 155270560 + 143195707 143196068 L1PA8A 6298 - 51 414 90394 13 0 1 198 13 14 137 chain 61722 chrX 155270560 + 143196068 143196807 L1PA8A 6298 + 5148 5892 52030 345 0 5 394 chain 35538 chrX 155270560 + 143208578 143208996 L1PA4 6152 - 0 417 75492 21 1 0 120 7 0 7 1 8 261 chain 17624 chrX 155270560 + 143229473 143229690 MER41C 542 - 0 218 133924 28 0 1 189 chain 159504 chrX 155270560 + 143243184 143247696 L1PA11 4918 + 237 4467 23401 117 6 5 132 0 1 4 7 7 208 0 2 81 1 0 31 2200 1901 13 10 0 7 11 20 73 19 14 179 4 2 7 0 2 189 0 4 206 0 3 5 6 22 295 25 16 4 1 0 4 0 1 539 9 18 39 7 6 73 chain 23456 chrX 155270560 + 143263976 143264251 AluY 311 + 0 293 113339 17 0 17 98 0 1 160 chain 240973 chrX 155270560 + 143277393 143280026 L1PA3long 6157 - 0 2634 16726 2456 0 1 177 chain 8458 chrX 155270560 + 143280026 143280120 L1PA3long 6157 + 3419 3513 168031 94 chain 21717 chrX 155270560 + 143291085 143291388 THE1B-int 1605 + 0 944 121328 232 23 664 48 chain 23423 chrX 155270560 + 143298156 143298513 MLT2A1 477 + 0 378 113515 40 21 33 21 3 0 25 0 1 21 1 2 26 0 4 142 0 1 7 1 0 30 6 12 13 chain 15666 chrX 155270560 + 143308096 143308278 L1PA5 6144 - 0 182 139376 182 chain 116936 chrX 155270560 + 143313490 143314880 LTR12C 1709 - 0 1709 32147 43 3 0 438 0 4 106 3 1 5 1 0 44 0 1 55 0 278 265 2 0 4 0 1 83 0 43 338 chain 3031 chrX 155270560 + 143322156 143322197 L1MEf 1413 - 171 212 224360 41 chain 56578 chrX 155270560 + 143345083 143345720 L1PA4 6152 + 5521 6151 54805 483 7 0 147 chain 25378 chrX 155270560 + 143360624 143360914 L1PA2 6032 + 5741 6031 102796 125 5 0 7 0 5 153 chain 5950 chrX 155270560 + 143373687 143373766 MSTA-int 1630 + 1514 1594 185680 65 2 3 12 chain 50007 chrX 155270560 + 143389201 143389762 L1PA3long 6157 - 0 568 59012 138 0 7 423 chain 5139 chrX 155270560 + 143395689 143395751 L1MA4 2864 + 2249 2311 193680 62 chain 26891 chrX 155270560 + 143403445 143403780 L1PA7 6471 + 6136 6469 96661 171 0 7 7 7 0 138 2 0 10 chain 48753 chrX 155270560 + 143404334 143404899 L1PA4 6152 + 5576 6138 59909 159 4 0 161 1 2 240 chain 271637 chrX 155270560 + 143406972 143409872 L1HS 6032 + 3129 6029 15106 2900 chain 29209 chrX 155270560 + 143414992 143415531 HUERS-P2-int 2744 - 3 513 88006 15 13 11 12 0 1 4 2 0 9 1 0 15 24 30 28 1 0 15 1 0 3 1 0 7 14 12 36 4 1 31 2 0 71 1 0 66 1 0 4 1 2 107 20 0 30 chain 32175 chrX 155270560 + 143429268 143429721 MLT2A1 477 - 0 477 80570 27 0 1 6 22 46 192 0 1 23 1 2 9 4 1 169 chain 298262 chrX 155270560 + 143429721 143433736 HERVL-int 5654 - 0 4018 13518 413 28 18 163 20 16 117 5 0 23 0 3 465 20 20 397 2 0 66 0 4 26 3 2 5 0 2 125 0 1 150 0 8 137 1 2 444 0 1 207 11 0 7 15 26 14 0 1 428 15 16 77 0 1 20 1 0 56 0 1 35 8 9 151 11 12 349 chain 159346 chrX 155270560 + 143487645 143489398 L1PA3long 6157 + 4411 6142 23422 354 22 0 1377 chain 13677 chrX 155270560 + 143504594 143504879 L1PB1 5432 - 15 274 145680 4 1 0 9 1 0 13 1 0 21 1 0 24 57 43 7 3 0 15 1 0 44 1 0 18 2 1 48 3 1 11 chain 25785 chrX 155270560 + 143505233 143505564 L1P5 443 - 6 337 100935 331 chain 41075 chrX 155270560 + 143567592 143568115 LTR10D 510 - 0 510 67804 248 3 0 26 6 5 39 2 0 73 4 0 17 2 1 24 2 0 77 chain 50226 chrX 155270560 + 143576051 143576639 LTR10C 591 - 0 581 58846 331 1 0 73 5 0 118 1 0 59 chain 4964 chrX 155270560 + 143580539 143580601 MER49 923 - 41 104 195540 8 0 1 54 chain 83502 chrX 155270560 + 143585542 143586473 L1PA4 6152 + 5220 6152 42117 923 0 1 8 chain 22952 chrX 155270560 + 143604793 143605049 L1PA4 6152 + 5887 6143 115843 256 chain 46222 chrX 155270560 + 143611341 143611965 PRIMA4_LTR 623 + 0 623 61832 51 1 0 85 10 11 112 4 5 144 0 4 67 0 1 117 7 0 26 chain 8545 chrX 155270560 + 143638810 143639064 MLT1A0 366 - 49 299 168048 44 125 124 61 3 0 21 chain 19876 chrX 155270560 + 143652372 143652717 THE1B 368 + 0 368 127568 44 0 15 46 30 31 6 0 1 29 1 0 113 36 43 40 chain 20161 chrX 155270560 + 143654290 143654566 THE1B 368 + 0 292 126641 44 0 15 42 10 10 65 1 0 81 0 2 33 chain 31074 chrX 155270560 + 143668766 143669118 L1PA4 6152 + 5795 6152 82386 346 0 5 6 chain 54195 chrX 155270560 + 143699913 143700582 L1P3 4156 - 999 1679 56236 56 0 4 67 0 5 21 0 1 373 1 2 151 chain 51001 chrX 155270560 + 143700582 143701208 L1P3 4156 + 1826 2467 58264 49 5 15 268 3 8 301 chain 12184 chrX 155270560 + 143715292 143715476 L1MA1 4479 + 3898 4078 151478 49 15 11 120 chain 34056 chrX 155270560 + 143715911 143716390 LTR2B 499 + 9 499 77533 5 1 0 55 2 0 40 5 24 166 3 4 14 1 0 27 8 3 152 chain 56239 chrX 155270560 + 143718465 143719080 L1PA3long 6157 - 16 631 55003 615 chain 25604 chrX 155270560 + 143719193 143719545 THE1C 375 - 25 375 101710 163 2 3 48 15 11 10 0 1 114 chain 26022 chrX 155270560 + 143729335 143729674 MLT2A1 477 - 92 428 99935 214 6 3 119 chain 12123 chrX 155270560 + 143763976 143764113 L1PA6 6164 + 6023 6160 151718 137 chain 187452 chrX 155270560 + 143772208 143774587 L1PA8 5853 - 1 2401 20297 92 1 0 19 2 1 45 0 1 6 1 0 9 2 1 34 0 3 33 2 0 48 1 0 36 0 3 46 65 82 384 6 5 1098 0 2 261 1 4 187 chain 17472 chrX 155270560 + 143816688 143816908 THE1D-int 1627 - 1377 1599 134324 30 0 1 61 0 1 129 chain 57950 chrX 155270560 + 143820275 143821024 MER4E 760 + 0 752 54002 23 0 1 234 7 0 7 0 7 239 0 1 20 1 2 218 chain 83163 chrX 155270560 + 143833776 143834911 L1PA10 4194 - 33 1155 42267 11 1 0 34 3 0 33 0 1 4 1 0 330 3 1 93 4 5 44 0 1 467 21 6 28 11 17 47 chain 28541 chrX 155270560 + 143843286 143843586 AluYb8 318 + 14 314 90993 300 chain 6721 chrX 155270560 + 143854038 143854141 L1MA3 4352 - 4149 4247 179526 28 4 0 20 2 1 49 chain 40526 chrX 155270560 + 143862545 143863014 L1PA5 6144 + 5674 6144 68555 256 0 3 68 0 1 103 1 0 27 3 1 11 chain 140765 chrX 155270560 + 143864971 143866666 LTR12C 1709 + 0 1709 26028 266 1 2 66 0 14 470 0 40 150 41 0 103 1 0 6 2 0 107 0 4 162 1 0 319 chain 43825 chrX 155270560 + 143868154 143868711 L1PA7 6471 - 1 565 64416 60 10 17 487 chain 10364 chrX 155270560 + 143872609 143872779 L1MA1 4479 + 3153 3321 158853 4 1 0 83 26 25 56 chain 46072 chrX 155270560 + 143872779 143873367 LTR14C 587 - 0 587 61972 97 0 1 130 11 7 48 0 2 302 chain 29600 chrX 155270560 + 143894546 143895222 L1M1 2793 + 2012 2684 86209 59 67 64 27 82 83 24 40 41 48 12 15 57 7 4 169 0 7 6 23 14 44 1 0 10 chain 10080 chrX 155270560 + 143914149 143914273 THE1D 372 + 248 372 160180 124 chain 3116 chrX 155270560 + 143946945 143946984 MADE1 96 - 1 40 222615 39 chain 66411 chrX 155270560 + 143947677 143948399 L1PA3long 6157 - 0 722 49911 722 chain 3837 chrX 155270560 + 143970836 143970881 MER58B 340 - 130 175 209827 45 chain 187826 chrX 155270560 + 144006841 144009142 L1PA8A 6298 + 3985 6292 20259 174 13 15 183 0 1 593 4 0 131 0 1 497 2 1 490 0 6 108 0 1 106 chain 98829 chrX 155270560 + 144048376 144049454 L1PA3long 6157 + 5078 6156 37066 1078 chain 7713 chrX 155270560 + 144066979 144067173 L1PB4 2604 + 2063 2337 172847 53 4 8 25 36 36 13 25 101 38 chain 8523 chrX 155270560 + 144083710 144083825 L1PA15 4387 - 533 650 168172 34 6 8 75 chain 24872 chrX 155270560 + 144097677 144097952 L1PA5 6144 - 7 282 105502 275 chain 5688 chrX 155270560 + 144097958 144098025 L1P1 4361 + 3676 3743 188211 67 chain 41556 chrX 155270560 + 144102094 144102618 L1P2 5180 + 578 1126 67212 171 4 5 33 1 0 6 1 0 140 0 25 168 chain 170570 chrX 155270560 + 144125010 144126924 L1PA4 6152 + 4233 6152 21986 1908 0 5 6 chain 20667 chrX 155270560 + 144138627 144138867 7SK 245 + 0 240 125078 240 chain 58332 chrX 155270560 + 144143192 144144019 HSMAR1 1287 + 481 1287 53789 76 5 0 180 19 0 30 3 0 146 32 35 109 0 1 23 0 3 123 5 4 76 chain 22763 chrX 155270560 + 144158177 144158433 L1PA4 6152 + 5882 6138 116763 256 chain 5691 chrX 155270560 + 144179610 144179755 MER53 195 - 14 168 188192 44 64 73 37 chain 39647 chrX 155270560 + 144188669 144189107 L1PA2 6032 + 5594 6032 69827 438 chain 39876 chrX 155270560 + 144199211 144199970 L1MA1 4479 + 3420 4162 69493 51 66 63 85 26 28 88 6 4 16 1 0 74 22 19 5 1 0 6 1 0 26 1 2 60 1 0 5 21 18 108 1 0 24 7 5 35 1 0 9 1 0 11 chain 7851 chrX 155270560 + 144215763 144215857 L1MB2 1706 - 179 273 171989 94 chain 19911 chrX 155270560 + 144226316 144226664 THE1D 372 - 0 361 127437 134 16 32 10 34 31 86 4 5 16 9 6 34 0 2 5 chain 347962 chrX 155270560 + 144230414 144235490 L1PB1 5432 + 77 5427 11667 173 21 22 188 8 9 51 0 1 64 0 1 19 2 3 57 18 19 73 1 0 10 0 10 209 13 14 27 8 6 35 0 13 315 12 9 145 0 73 21 0 4 8 3 0 159 4 1 208 0 312 152 23 10 102 1 0 242 2 0 66 1 2 83 1 0 13 0 1 66 38 31 123 0 1 4 6 5 378 0 1 116 2 0 444 0 10 191 4 3 55 17 18 11 12 17 62 0 9 57 0 4 13 3 0 81 4 3 94 4 2 216 3 4 77 110 11 17 1 0 10 1 0 5 1 0 10 2 0 3 2 0 9 12 10 42 2 1 16 2 1 43 6 5 15 3 0 12 25 14 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 110082 chrX 155270560 + 144247289 144248662 L1PA7 6471 + 5092 6450 34194 59 9 1 59 3 2 208 0 2 90 16 9 99 1 0 329 0 1 491 1 0 8 chain 14200 chrX 155270560 + 144326029 144326249 MER30 238 + 0 238 143877 109 14 29 58 13 16 26 chain 19890 chrX 155270560 + 144329639 144329889 LTR46-int 301 - 2 243 127518 39 8 0 109 1 0 93 chain 32156 chrX 155270560 + 144336552 144337002 LTR46 455 - 0 455 80600 59 1 0 8 25 32 140 0 1 26 3 1 188 chain 12370 chrX 155270560 + 144399853 144400006 L1PA7 6471 + 6314 6467 150750 153 chain 191616 chrX 155270560 + 144402687 144404870 L1PA5 6144 - 16 2205 19900 1106 0 1 385 0 5 692 chain 18744 chrX 155270560 + 144404870 144405085 L1PA5 6144 + 3728 3943 130573 215 chain 9995 chrX 155270560 + 144406590 144406708 L1PA5 6144 - 2 119 160604 113 1 0 4 chain 50613 chrX 155270560 + 144407735 144408314 LTR10C 591 - 0 581 58570 62 0 1 234 0 1 283 chain 7811 chrX 155270560 + 144424155 144424243 L1PA3long 6157 + 6068 6156 172247 88 chain 7007 chrX 155270560 + 144429682 144429772 MER33 330 - 104 194 177427 90 chain 3094 chrX 155270560 + 144433016 144433056 L1MC 810 + 519 559 223026 40 chain 29264 chrX 155270560 + 144435386 144435694 AluYb8 318 + 0 308 87723 308 chain 158890 chrX 155270560 + 144438928 144440691 L1PA3long 6157 - 0 1764 23476 4 0 1 1759 chain 14398 chrX 155270560 + 144440784 144440947 L1PA3long 6157 + 5994 6157 143214 163 chain 6684 chrX 155270560 + 144441307 144441987 L1MB8 1703 + 425 1368 179792 55 37 38 28 517 779 43 chain 66884 chrX 155270560 + 144444731 144445524 L1PA7 6471 - 6 802 49690 7 0 1 457 0 2 329 chain 18114 chrX 155270560 + 144466861 144467078 L1PA7 6471 + 6258 6468 132555 126 5 0 77 2 0 7 chain 12881 chrX 155270560 + 144500027 144500247 THE1B 368 + 132 368 148705 12 2 0 25 1 0 9 0 18 4 1 0 9 29 31 128 chain 29695 chrX 155270560 + 144506380 144506793 MLT2A1 477 - 0 469 85851 37 0 56 46 20 22 112 0 1 32 11 8 155 chain 140430 chrX 155270560 + 144517101 144518659 SVA_D 2077 + 1 2077 26083 12 5 0 12 5 0 739 0 40 104 1 0 9 0 489 671 chain 24807 chrX 155270560 + 144519886 144520195 AluY 311 + 4 311 105849 300 2 0 7 chain 43405 chrX 155270560 + 144525256 144525784 THE1B-int 1605 + 1071 1599 64930 528 chain 177929 chrX 155270560 + 144543853 144545816 L1PA4 6152 + 4180 6143 21169 1963 chain 280070 chrX 155270560 + 144549693 144553938 MER61-int 3695 + 0 3695 14640 30 4 0 20 1 0 23 479 0 28 3 0 171 1 0 24 0 1 12 1 0 17 9 6 78 16 2 56 23 0 174 9 7 111 0 1 191 0 2 77 1 0 64 0 1 64 0 7 83 0 1 48 27 1 124 0 1 63 0 5 115 0 6 50 8 3 138 1 0 292 7 9 34 1 0 105 1 0 220 4 5 69 2 0 51 3 2 22 4 0 151 1 0 73 0 1 23 1 0 38 4 3 249 3 0 180 3 4 352 1 0 7 chain 50350 chrX 155270560 + 144556206 144556791 LTR10C 591 - 5 591 58755 74 0 2 439 1 0 71 chain 9603 chrX 155270560 + 144562259 144562375 MLT1A0 366 - 21 137 162585 116 chain 35160 chrX 155270560 + 144608404 144609347 L1M1 2793 + 553 1377 75972 12 3 0 5 1 0 8 2 1 12 144 70 41 92 70 30 1 0 29 2 0 8 1 0 54 34 31 32 8 9 38 2 1 128 7 6 13 41 42 56 4 0 17 25 18 93 chain 26005 chrX 155270560 + 144616345 144616645 AluY 311 + 2 304 99993 130 0 1 128 0 1 42 chain 118348 chrX 155270560 + 144626099 144627643 THE1B-int 1605 - 0 1605 31671 956 44 76 122 0 25 310 0 3 20 8 9 84 chain 7618 chrX 155270560 + 144634046 144634145 L1MA4A 3247 - 142 241 173426 99 chain 11640 chrX 155270560 + 144669440 144669599 L1PA11 4918 + 4032 4191 153738 15 12 12 132 chain 3638 chrX 155270560 + 144678985 144679023 L1P4b 1366 + 8 46 213001 38 chain 15997 chrX 155270560 + 144679077 144679366 L1PA11 4918 + 4213 4504 138357 117 0 8 30 46 43 54 9 7 16 1 0 16 chain 39533 chrX 155270560 + 144688331 144688768 L1PA4 6152 + 5715 6152 69981 437 chain 150602 chrX 155270560 + 144786062 144787731 L1PA4 6152 + 4474 6143 24525 401 0 1 514 1 0 753 chain 3913 chrX 155270560 + 144797808 144797853 MER61-int 3695 + 3650 3695 208658 45 chain 74219 chrX 155270560 + 144802358 144803318 LTR5_Hs 974 - 0 974 46403 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 157 5 13 115 chain 39646 chrX 155270560 + 144803604 144804149 L1PA11 4918 + 3929 4475 69828 196 1 2 5 1 0 27 1 0 172 7 10 41 26 25 68 chain 21274 chrX 155270560 + 144820362 144820668 THE1C 375 + 0 325 122949 15 2 0 61 9 10 100 0 1 26 5 24 88 chain 29146 chrX 155270560 + 144864307 144864621 AluYb8 318 + 0 313 88333 132 1 0 181 chain 28494 chrX 155270560 + 144866676 144867032 L1PA7 6471 + 6117 6469 91205 180 7 1 158 0 2 11 chain 23371 chrX 155270560 + 144871658 144871940 AluSp 311 - 29 311 113810 282 chain 24804 chrX 155270560 + 144888232 144888543 AluSq2 311 + 0 310 105870 17 3 0 256 7 9 28 chain 50662 chrX 155270560 + 144918643 144919242 L1PA5 6144 - 0 607 58528 177 7 14 393 0 1 22 chain 63005 chrX 155270560 + 144939655 144940413 LTR17 781 - 0 767 51443 8 1 0 296 0 17 59 13 7 67 1 0 313 chain 23854 chrX 155270560 + 144962936 144963287 THE1D 372 - 12 372 111164 20 1 0 147 1 0 6 20 21 138 4 14 14 chain 27099 chrX 155270560 + 144964087 144964396 L1PA5 6144 - 3 311 95943 249 2 1 58 chain 17105 chrX 155270560 + 144981711 144981909 L1PA4 6152 - 16 217 135297 68 0 1 28 0 1 41 0 1 61 chain 70778 chrX 155270560 + 144994542 144995332 L1PA5 6144 - 9 799 48021 104 1 0 225 0 1 460 chain 26800 chrX 155270560 + 145010462 145010802 THE1B 368 + 0 356 96985 15 0 1 19 4 20 118 1 0 183 chain 29932 chrX 155270560 + 145020657 145021018 HERVL-int 5654 + 0 361 85019 361 chain 8361 chrX 155270560 + 145027816 145027923 L1PA7 6471 - 6 108 169070 6 5 0 96 chain 33145 chrX 155270560 + 145051978 145052383 LTR10F 562 + 0 554 78994 130 0 149 275 chain 118944 chrX 155270560 + 145054150 145056180 HERVIP10FH-int 2884 + 149 1802 31437 34 6 11 14 3 0 169 1 0 92 0 7 112 303 0 134 1 0 312 0 1 173 2 0 172 4 1 7 3 0 9 1 0 9 1 0 61 13 7 125 11 1 13 57 42 11 20 3 43 19 7 42 10 0 3 1 0 15 9 8 15 chain 120618 chrX 155270560 + 145056180 145057465 L1HS 6032 + 4747 6032 30837 1285 chain 35622 chrX 155270560 + 145058805 145059257 LTR10F 562 + 0 560 75383 153 0 69 6 0 3 14 1 37 278 chain 16743 chrX 155270560 + 145059266 145059471 THE1B-int 1605 + 1354 1559 136277 205 chain 16338 chrX 155270560 + 145059517 145059855 THE1B 368 + 0 368 137375 18 17 0 26 74 91 23 1 2 12 1 0 25 2 0 112 0 32 27 chain 4786 chrX 155270560 + 145059898 145060002 L1MA2 4263 + 4008 4105 197503 34 36 29 34 chain 53067 chrX 155270560 + 145061824 145062582 MER4E1 777 + 0 768 56975 25 1 0 135 2 5 31 12 9 31 4 0 177 0 1 19 0 2 104 22 29 111 0 1 16 4 6 49 0 2 15 chain 27104 chrX 155270560 + 145072958 145073333 THE1C 375 - 2 375 95932 24 1 0 28 9 7 175 13 14 125 chain 29219 chrX 155270560 + 145077684 145077992 AluYa5 310 - 2 310 87960 308 chain 25188 chrX 155270560 + 145097505 145097855 THE1B 368 - 12 368 103807 37 0 10 6 3 1 109 4 0 19 2 1 128 0 5 27 2 0 13 chain 122068 chrX 155270560 + 145119404 145120970 THE1B-int 1605 + 0 1600 30360 265 6 7 158 1 25 290 0 1 4 1 0 158 22 28 103 0 1 185 1 2 368 0 1 4 chain 19440 chrX 155270560 + 145120975 145121267 THE1B 368 + 0 302 128849 41 1 16 110 20 19 6 2 0 47 2 0 63 chain 7172 chrX 155270560 + 145127411 145127499 LTR12C 1709 - 891 979 176259 88 chain 3416 chrX 155270560 + 145127499 145127579 LTR12C 1709 - 535 658 216010 15 30 73 35 chain 55980 chrX 155270560 + 145131254 145131865 SVA_B 1603 + 994 1603 55134 603 2 0 6 chain 11730 chrX 155270560 + 145135158 145135303 MER1A 529 + 306 451 153347 145 chain 977 chrX 155270560 + 145155518 145155632 L1MB3 1562 - 9 124 166508 12 1 0 18 1 0 17 0 3 65 chain 22431 chrX 155270560 + 145155689 145156047 THE1B 368 - 0 368 118335 14 31 27 87 1 0 10 1 0 12 0 4 14 5 10 21 1 0 81 0 8 80 chain 309 chrX 155270560 + 145156512 145156548 L1MB3 1562 - 228 264 166508 36 chain 25108 chrX 155270560 + 145157708 145158005 AluSp 311 + 4 301 104237 297 chain 19466 chrX 155270560 + 145176858 145177213 L1PA15 4387 + 3976 4327 128763 18 0 1 5 1 0 104 1 0 19 0 2 5 1 0 55 1 0 21 4 0 11 1 0 39 42 46 11 4 2 12 chain 88441 chrX 155270560 + 145192835 145193793 L1PA2 6032 - 0 958 40207 958 chain 50114 chrX 155270560 + 145193793 145194328 L1PA2 6032 + 4544 5079 58933 535 chain 519054 chrX 155270560 + 145200384 145206861 L1PA6 6164 + 0 6162 5258 328 8 9 50 24 26 646 0 1 163 8 9 214 1 0 647 1 2 230 7 0 864 2 3 25 1 2 708 0 4 397 4 2 527 314 0 264 0 1 793 3 1 240 2 0 6 chain 6504 chrX 155270560 + 145228878 145228957 MER3 215 + 54 133 181205 79 chain 25810 chrX 155270560 + 145250995 145251289 L1PA4 6152 - 1 296 100827 147 0 1 147 chain 39766 chrX 155270560 + 145276936 145277374 L1PA4 6152 + 5714 6151 69669 289 1 0 148 chain 4829 chrX 155270560 + 145285429 145285500 L1MA4 2864 - 55 124 197025 43 3 1 25 chain 9458 chrX 155270560 + 145292694 145292849 L1PA13 3608 - 185 335 163285 25 1 0 4 2 0 8 6 5 47 10 9 52 chain 127711 chrX 155270560 + 145292855 145294328 L1PA5 6144 + 4670 6141 28641 601 1 5 16 7 6 48 0 1 314 6 0 480 chain 512007 chrX 155270560 + 145309446 145315613 L1PA6 6164 - 2 6164 5975 145 15 15 317 7 1 316 0 1 48 11 10 658 28 2 281 2 6 336 0 11 630 2 0 69 1 0 5 0 1 10 7 6 50 0 4 313 0 5 145 0 1 449 3 4 427 0 1 84 0 2 155 0 1 1143 2 1 309 0 1 199 chain 200002 chrX 155270560 + 145370798 145373445 L1PA10 4194 - 992 3659 19212 61 6 0 178 6 0 230 11 10 74 18 20 18 0 2 154 0 1 228 0 4 328 6 8 175 2 0 5 0 4 368 0 1 40 11 6 46 0 1 5 0 10 298 1 2 93 8 9 5 1 0 64 0 12 207 chain 5032 chrX 155270560 + 145380673 145380736 MER82 654 + 572 632 194805 53 3 0 7 chain 9883 chrX 155270560 + 145384517 145384632 L1PA2 6032 - 1 116 161162 115 chain 4402 chrX 155270560 + 145384632 145384681 L1PA2 6032 + 5845 5894 201902 49 chain 3128 chrX 155270560 + 145393925 145393967 L1PA8A 6298 + 6249 6291 222397 42 chain 261356 chrX 155270560 + 145394480 145397793 HERVL-int 5654 - 899 4360 15627 109 0 1 677 0 2 327 4 5 522 12 0 291 0 4 312 3 6 281 1 2 120 0 6 41 2 143 37 5 6 569 chain 25684 chrX 155270560 + 145412165 145412460 AluSp 311 - 15 310 101358 295 chain 49684 chrX 155270560 + 145414159 145414747 LTR10C 591 - 0 591 59245 81 0 2 337 1 2 169 chain 29253 chrX 155270560 + 145418056 145418366 AluYa5 310 - 0 310 87776 310 chain 3986 chrX 155270560 + 145427529 145427580 MER53 195 + 46 97 207600 51 chain 37266 chrX 155270560 + 145432535 145433088 MER41A 554 + 9 554 73148 24 39 36 202 1 2 134 14 6 13 0 1 95 0 1 31 chain 72709 chrX 155270560 + 145443439 145444227 L1PA3long 6157 - 3 791 47162 788 chain 34152 chrX 155270560 + 145453605 145454063 L1PBa 3878 - 1125 2063 77409 38 1 0 5 1 4 98 1 479 314 chain 15822 chrX 155270560 + 145464631 145464891 L1MA2 4263 + 3860 4114 138883 4 1 0 38 0 1 55 1 0 6 2 1 58 9 13 22 7 0 47 1 0 9 chain 4600 chrX 155270560 + 145509000 145509052 5S 121 - 31 83 199625 52 chain 86901 chrX 155270560 + 145523084 145524162 MER11B 1079 + 0 1074 40825 225 0 5 29 3 0 328 13 12 173 8 2 275 5 6 19 chain 158409 chrX 155270560 + 145551870 145553608 L1PA3long 6157 - 0 1738 23543 1738 chain 117329 chrX 155270560 + 145574007 145575912 THE1A-int 1579 + 0 1579 32017 80 0 1 108 12 13 288 324 0 232 0 9 8 9 0 8 0 1 4 1 0 175 12 11 12 36 32 461 0 1 135 chain 28254 chrX 155270560 + 145575912 145576267 THE1A 353 + 0 353 92095 110 1 0 81 8 7 155 chain 26006 chrX 155270560 + 145636333 145636675 THE1A 353 + 2 353 99991 59 0 1 12 1 0 35 2 1 143 0 10 90 chain 18127 chrX 155270560 + 145637363 145637607 L1PA8 5853 + 5613 5853 132525 65 2 1 9 1 0 52 2 1 19 1 0 93 chain 4113 chrX 155270560 + 145655990 145656036 LTR10C 591 + 545 591 205740 46 chain 48922 chrX 155270560 + 145656368 145656926 LTR10C 591 - 30 591 59796 51 0 2 347 0 1 160 chain 21079 chrX 155270560 + 145660805 145661067 LTR66 600 + 335 600 123622 72 0 6 71 3 0 116 chain 6804 chrX 155270560 + 145680391 145680472 L1MA2 4263 - 4159 4240 178920 81 chain 21540 chrX 155270560 + 145686875 145687132 L1PA4 6152 - 9 264 122002 159 2 1 91 1 0 4 chain 7490 chrX 155270560 + 145696779 145696925 LTR19C 757 - 91 221 174208 58 23 22 41 15 0 9 chain 148969 chrX 155270560 + 145699428 145703176 L1P1 4361 + 2627 4328 24760 809 2045 0 715 1 0 154 1 0 23 chain 110585 chrX 155270560 + 145703861 145705083 L1PA3long 6157 - 0 1217 34058 149 1 0 184 0 1 328 1 0 183 4 0 372 chain 23988 chrX 155270560 + 145709228 145709630 MER4E 760 + 329 752 110392 23 0 1 4 4 6 19 64 62 58 0 1 26 1 0 4 5 25 194 chain 82549 chrX 155270560 + 145720940 145722096 MER11C 1089 + 0 1068 42517 107 119 0 157 0 3 52 1 18 253 10 11 173 0 8 145 0 2 139 chain 39145 chrX 155270560 + 145732579 145733038 LTR2 463 - 0 463 70544 198 0 1 101 4 7 156 chain 4019 chrX 155270560 + 145746063 145746120 MLT1D 503 + 431 485 207086 11 3 0 43 chain 56605 chrX 155270560 + 145747443 145748178 L1PA8 5853 + 5121 5850 54779 443 1 0 44 2 0 51 1 2 5 1 0 13 1 0 11 1 0 4 0 1 44 3 2 17 6 5 87 chain 2438 chrX 155270560 + 145756611 145756683 MER96B 391 + 286 342 233887 21 8 10 15 18 0 10 chain 31288 chrX 155270560 + 145760295 145760694 MLT2A1 477 + 0 399 82008 86 0 3 79 5 2 9 0 1 24 0 3 178 4 0 14 chain 34401 chrX 155270560 + 145790534 145790925 L1PA4 6152 + 5760 6151 77054 391 chain 426443 chrX 155270560 + 145800583 145805635 L1PA6 6164 + 2 6162 9386 167 4 0 350 1 3 45 1 0 1588 0 1104 14 0 3 917 0 1 4 1 0 67 1 0 7 0 1 1488 5 6 65 2 1 95 1 5 229 chain 26076 chrX 155270560 + 145812200 145812485 L1PA3long 6157 - 8 293 99724 285 chain 26872 chrX 155270560 + 145814405 145814698 L1PA3long 6157 - 0 293 96735 293 chain 75722 chrX 155270560 + 145828921 145829838 L1PA5 6144 + 5222 6144 45639 70 1 2 678 25 25 35 1 0 72 0 5 35 chain 7063 chrX 155270560 + 145858781 145858871 L1PREC2 3366 - 2133 2230 177010 10 0 7 80 chain 11709 chrX 155270560 + 145867008 145867287 L1PB1 5432 + 5168 5422 153424 35 1 2 14 1 0 10 7 8 44 1 0 15 72 50 24 1 0 22 1 0 12 1 0 18 chain 14401 chrX 155270560 + 145877385 145877558 THE1B-int 1605 + 1418 1591 143208 173 chain 125524 chrX 155270560 + 145941356 145943159 MER4-int 2692 - 1 1807 29234 14 8 9 190 3 0 192 1 0 4 11 2 11 2 0 5 11 9 29 2 0 14 0 1 26 1 2 171 3 15 134 0 1 215 8 9 118 13 8 34 0 1 53 1 0 219 5 8 117 9 12 60 6 8 76 4 5 25 0 1 8 chain 71964 chrX 155270560 + 145943159 145943939 L1PA2 6032 + 5252 6032 47491 780 chain 8961 chrX 155270560 + 145945817 145945928 LTR8 732 + 69 180 165820 111 chain 132932 chrX 155270560 + 145947376 145948961 LTR12C 1709 - 0 1709 27436 481 0 4 27 0 1 79 3 1 5 1 0 274 1 0 19 0 119 431 1 2 50 1 4 212 chain 21722 chrX 155270560 + 145951115 145951390 MER4A1 472 - 166 472 121310 60 0 21 17 0 11 171 1 0 26 chain 16481 chrX 155270560 + 145963544 145963743 MER4E 760 - 0 199 136979 199 chain 29030 chrX 155270560 + 145964404 145964714 AluYa5 310 - 0 310 88852 310 chain 242811 chrX 155270560 + 145983646 145986291 L1PA2 6032 + 3398 6032 16620 641 2 1 241 6 0 895 4 0 856 chain 42779 chrX 155270560 + 145996964 145997879 MER11C 1089 - 33 1081 65681 15 0 1 77 1 0 74 5 6 47 303 337 22 4 0 6 6 9 96 0 5 99 7 10 99 1 92 53 chain 7360 chrX 155270560 + 146016421 146016607 L1MA3 4352 - 0 172 175031 22 6 2 13 1 0 27 1 0 5 8 6 10 40 34 53 chain 126024 chrX 155270560 + 146024245 146025809 THE1A-int 1579 - 0 1579 29092 348 0 13 99 0 4 485 1 0 459 2 1 170 chain 80358 chrX 155270560 + 146038729 146039809 MER11A 1151 + 0 1151 43451 57 0 98 76 0 5 58 4 0 30 0 2 62 0 1 54 0 1 89 0 1 4 0 1 20 1 0 246 2 1 24 26 0 32 3 0 74 8 1 34 0 1 113 7 6 20 0 4 36 chain 23400 chrX 155270560 + 146101398 146102023 MER4E1 777 - 8 624 53220 7 0 4 133 1 2 75 13 0 11 2 0 131 0 1 252 chain 62639 chrX 155270560 + 146102027 146102829 LTR17 781 + 0 781 51613 111 8 17 175 10 0 23 0 1 70 27 9 112 2 0 256 1 0 7 chain 5728 chrX 155270560 + 146102829 146102982 MER4E1 777 - 624 777 53220 153 chain 5906 chrX 155270560 + 146103436 146103534 HSMAR2 1300 - 4 100 186127 45 1 8 29 9 0 14 chain 10541 chrX 155270560 + 146118270 146118446 L1MA2 4263 - 342 515 158082 111 24 20 24 3 4 14 chain 16414 chrX 155270560 + 146122710 146123070 THE1D 372 + 0 372 137172 53 78 87 25 26 30 60 1 0 81 5 4 19 2 3 10 chain 79877 chrX 155270560 + 146178541 146179593 MER11B 1079 + 0 1079 43649 316 1 18 73 32 33 154 9 1 130 0 1 19 0 1 24 2 4 9 0 13 231 0 1 17 22 21 13 chain 25549 chrX 155270560 + 146180786 146181103 AluYk4 311 + 0 311 101996 123 9 3 185 chain 54557 chrX 155270560 + 146191947 146192781 L1PA13 3608 + 220 1071 55992 23 0 1 5 12 11 26 12 10 120 14 12 17 2 0 14 15 46 10 2 0 17 1 0 99 2 0 354 9 7 61 1 0 18 chain 37961 chrX 155270560 + 146208046 146208509 L1PA7 6471 - 20 476 72188 89 6 0 263 2 1 103 chain 8813 chrX 155270560 + 146208509 146208614 L1P3 4156 + 343 448 166153 105 chain 27849 chrX 155270560 + 146213202 146213594 LTR7 482 - 13 482 93525 163 0 1 9 28 53 18 0 1 74 0 50 100 chain 91621 chrX 155270560 + 146214137 146215886 HERVH-int 3825 - 0 3825 39085 97 0 1 112 8 10 103 248 2264 196 1 0 247 118 237 12 0 1 10 1 0 21 4 0 13 48 65 16 54 2 6 3 0 42 5 6 31 1 0 76 22 0 147 0 3 107 chain 172514 chrX 155270560 + 146216662 146218899 L1PA8A 6298 + 4020 6291 21761 86 3 2 139 0 12 28 0 2 44 26 25 36 2 6 33 0 1 28 0 1 147 0 7 76 1 0 7 0 1 280 0 6 219 5 6 7 1 0 85 0 1 186 1 8 64 13 10 395 6 3 276 5 6 38 chain 27069 chrX 155270560 + 146219547 146219950 LTR7 482 + 0 474 96039 54 23 61 109 5 6 26 5 36 73 1 2 107 chain 554307 chrX 155270560 + 146223574 146229679 L1PA3long 6157 - 21 6153 910 117 0 19 1638 0 2 413 1 2 47 0 2 1135 4 7 2750 chain 49905 chrX 155270560 + 146240069 146240671 L1PA8 5853 + 5053 5681 59087 269 0 27 77 0 2 136 2 1 44 2 0 72 chain 23298 chrX 155270560 + 146253995 146254503 MER4B 649 - 16 649 114213 53 0 1 17 1 0 69 0 45 8 30 31 11 18 56 31 37 29 38 6 5 23 0 23 20 6 34 22 0 1 4 1 0 36 33 32 44 chain 15522 chrX 155270560 + 146271765 146271938 L1PA2 6032 - 421 593 139819 86 1 0 86 chain 39112 chrX 155270560 + 146271938 146272361 L1PA2 6032 + 5606 6032 70586 138 0 3 285 chain 8562 chrX 155270560 + 146276655 146276762 MSTA 426 + 2 109 167946 107 chain 513508 chrX 155270560 + 146281827 146287992 L1PA6 6164 + 8 6161 5832 229 0 2 11 1 2 138 10 6 122 0 2 47 1 0 120 2 1 362 0 30 217 0 1 1019 23 8 234 2 0 402 0 1 113 7 7 107 0 1 239 0 4 49 4 0 212 0 1 175 3 4 89 1 0 958 0 1 366 0 5 25 6 10 135 38 0 698 chain 7788 chrX 155270560 + 146290910 146291010 MSTA 426 + 2 104 172362 46 0 2 54 chain 8542 chrX 155270560 + 146299897 146300008 MSTA 426 + 2 109 168053 15 4 0 92 chain 162226 chrX 155270560 + 146302302 146304104 L1PA2 6032 - 6 1828 23031 17 2 0 118 0 7 151 1 0 477 0 1 149 0 28 369 10 1 470 4 0 34 chain 140957 chrX 155270560 + 146304104 146305706 L1PA2 6032 + 2655 4216 25950 515 1 0 82 5 0 60 31 0 31 4 0 873 chain 51317 chrX 155270560 + 146326290 146327057 L1PA11 4918 + 3836 4578 58094 73 0 1 312 0 1 109 5 0 50 13 12 13 2 0 59 8 6 16 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 32166 chrX 155270560 + 146351334 146351776 HERVK22-int 3844 + 13 439 80591 27 3 0 150 4 5 135 22 8 101 chain 11533 chrX 155270560 + 146358725 146358858 L1PA4 6152 + 6014 6152 154173 127 0 5 6 chain 14006 chrX 155270560 + 146386095 146386326 MER30 238 + 6 238 144559 12 1 0 4 21 15 65 5 10 83 1 4 39 chain 39379 chrX 155270560 + 146390475 146390993 MER41C 542 + 0 542 70204 49 0 1 258 7 28 93 0 2 111 chain 26043 chrX 155270560 + 146416645 146416953 AluYc 301 + 0 301 99848 15 0 1 98 7 0 135 1 0 52 chain 3686 chrX 155270560 + 146418239 146418281 MADE1 96 + 45 87 212143 42 chain 8730 chrX 155270560 + 146426963 146427062 L1PA4 6152 + 6051 6151 167020 76 0 1 23 chain 25606 chrX 155270560 + 146428516 146428811 L1PA5 6144 + 5838 6144 101698 37 0 6 245 2 7 11 chain 21752 chrX 155270560 + 146429930 146430282 THE1B 368 - 0 368 121200 91 1 0 9 67 70 30 1 0 113 0 15 40 chain 149963 chrX 155270560 + 146433859 146435860 L1PA10 4194 + 2183 4161 24612 22 1 0 425 5 6 14 11 0 13 5 4 49 14 10 110 2 1 209 0 1 208 0 1 5 1 0 247 6 5 491 1 0 76 1 0 37 3 0 33 1 0 11 chain 49917 chrX 155270560 + 146442320 146442862 L1PA4 6152 - 1 543 59078 542 chain 5918 chrX 155270560 + 146448516 146448583 MER51B 395 - 328 395 186018 67 chain 3840 chrX 155270560 + 146480894 146480939 MER33 330 + 238 283 209782 45 chain 284643 chrX 155270560 + 146487109 146495008 L1PA8 5853 + 50 5847 14377 21 2 0 11 1 0 11 45 15 124 28 26 40 40 28 34 0 1 275 0 3 276 0 1892 54 9 10 14 17 19 86 10 11 90 1 0 602 8 15 649 14 9 231 7 11 391 43 0 88 3914 0 433 0 1 43 1 0 29 0 2 15 2 0 68 2 1 61 2 1 19 2 1 86 chain 199148 chrX 155270560 + 146490343 146492493 L1PA2 6032 - 1714 3864 19273 2150 chain 156869 chrX 155270560 + 146492493 146494195 L1PA2 6032 + 4331 6032 23745 1557 1 0 144 chain 23464 chrX 155270560 + 146505674 146505966 L1PA8 5853 - 529 822 113298 236 0 1 56 chain 11987 chrX 155270560 + 146505966 146506105 L1PA8 5853 + 5381 5520 152259 139 chain 3358 chrX 155270560 + 146506110 146506148 L1PA8 5853 + 5526 5564 217893 38 chain 8355 chrX 155270560 + 146506149 146506264 L1PA8 5853 + 5564 5678 169098 45 2 0 29 1 2 38 chain 4487 chrX 155270560 + 146506280 146506333 L1PA8 5853 + 5690 5743 200931 53 chain 7667 chrX 155270560 + 146506352 146506445 L1PA8 5853 + 5760 5853 173122 93 chain 27262 chrX 155270560 + 146513711 146514108 L1PA16 3655 + 3144 3545 95396 57 1 0 23 9 17 50 18 15 239 chain 5253 chrX 155270560 + 146520237 146520297 L1PA8 5853 - 0 60 192484 60 chain 43262 chrX 155270560 + 146523421 146524025 MER41B 635 + 0 635 65101 88 1 0 38 2 3 20 10 37 275 8 7 18 6 11 138 chain 30063 chrX 155270560 + 146537132 146537564 L1PA8 5853 - 0 426 84615 92 2 1 19 2 1 49 4 3 9 18 17 53 2 0 45 1 0 114 0 1 22 chain 69384 chrX 155270560 + 146541641 146542417 L1PA5 6144 - 16 791 48649 96 1 0 679 chain 32989 chrX 155270560 + 146542417 146542795 L1PA5 6144 + 4977 5359 78238 318 1 5 59 chain 9516 chrX 155270560 + 146549373 146549555 MER2 342 - 120 304 162993 112 52 54 18 chain 8360 chrX 155270560 + 146559253 146559342 L1HS 6032 + 5943 6032 169072 89 chain 48324 chrX 155270560 + 146572233 146572813 L1PA6 6164 - 8 588 60226 135 5 6 398 1 0 41 chain 17705 chrX 155270560 + 146580670 146580913 L1PA8 5853 - 0 241 133690 92 1 0 20 2 1 51 1 2 8 1 0 67 chain 46184 chrX 155270560 + 146629517 146630059 L1PA5 6144 + 5598 6139 61864 71 0 2 220 1 0 91 7 4 10 0 1 142 chain 12899 chrX 155270560 + 146633925 146634062 L1PA3long 6157 - 0 137 148634 137 chain 5092 chrX 155270560 + 146671755 146671831 L1MA4 2864 + 2508 2586 194157 12 5 6 31 0 1 28 chain 4345 chrX 155270560 + 146677289 146677337 L1MA10 1535 - 1023 1071 202663 48 chain 5767 chrX 155270560 + 146701321 146701389 L1MA10 1535 + 0 68 187465 68 chain 42199 chrX 155270560 + 146701532 146702053 MLT2A2 560 + 0 532 66396 239 1 0 163 0 11 77 0 1 41 chain 73384 chrX 155270560 + 146726444 146727896 L1PB1 5432 + 4163 5424 46844 42 0 2 4 1 0 208 51 53 137 5 9 7 10 0 51 0 3 19 17 20 12 8 0 64 8 0 10 3 11 192 8 10 86 171 11 20 1 0 13 30 23 50 2 1 16 1 0 43 1 0 15 2 0 7 16 7 12 14 11 10 3 4 22 3 2 22 1 0 12 1 0 16 1 0 4 chain 6448 chrX 155270560 + 146729682 146729775 MER5A1 166 - 48 146 181653 12 1 7 34 1 0 45 chain 567365 chrX 155270560 + 146735252 146741285 L1HS 6032 + 0 6032 64 6010 1 0 22 chain 81388 chrX 155270560 + 146765098 146766752 L1PB2 3958 + 76 1379 43015 8 5 0 20 10 5 29 2 0 15 0 6 16 27 18 7 1 0 28 4 1 112 16 18 52 0 1 43 43 14 214 0 2 167 332 11 60 0 2 64 39 47 76 1 0 13 8 12 87 29 26 93 0 3 33 chain 132975 chrX 155270560 + 146781052 146783085 L1PB1 5432 + 3344 5412 27427 40 0 4 249 0 35 55 1 6 282 0 1 18 5 7 157 1 9 13 0 12 123 0 2 71 1 7 36 0 4 110 53 36 32 0 9 14 0 3 20 0 6 13 0 3 91 2 5 100 0 4 40 0 4 130 53 19 24 1 0 9 16 11 11 9 7 11 1 6 24 5 4 16 1 0 43 1 0 16 1 0 4 18 8 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 8 chain 63875 chrX 155270560 + 146854299 146855087 LTR17 781 + 0 781 51066 298 10 0 29 0 1 64 1 0 339 5 8 5 1 0 29 0 1 7 chain 59444 chrX 155270560 + 146879957 146880756 L1PA8 5853 + 5062 5853 53145 188 0 1 248 1 0 22 1 0 43 1 0 44 2 0 70 20 18 48 1 0 11 6 5 93 chain 530230 chrX 155270560 + 146900590 146907081 L1PA7 6471 + 0 6467 4162 124 16 18 247 4 0 23 2 0 6 6 8 189 8 7 76 0 1 87 0 1 291 1 0 318 12 0 213 0 1 17 9 13 346 4 0 154 5 4 33 0 1 275 9 5 227 2 0 799 3 2 37 1 0 485 1 2 9 0 1 61 0 1 872 0 1 548 1 0 120 3 0 126 0 1 380 2 1 328 3 0 8 chain 184510 chrX 155270560 + 146908927 146912704 L1PA10 4194 + 1358 3827 20543 274 1 2 13 0 2 3 1334 0 235 1 5 120 0 4 115 0 1 90 0 4 128 0 1 255 1 2 5 1 0 10 11 12 381 34 39 403 0 1 180 8 9 83 4 5 87 chain 85094 chrX 155270560 + 146909222 146910552 LTR12D 1347 - 0 1347 41482 231 0 97 69 1 0 175 24 0 69 15 8 75 0 1 54 2 33 165 51 6 31 98 27 25 42 78 203 chain 62308 chrX 155270560 + 146926418 146927173 L1PA8 5853 + 5101 5849 51750 463 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 89 chain 30138 chrX 155270560 + 146945623 146945979 L1PA4 6152 - 185 526 84356 58 15 0 283 chain 15238 chrX 155270560 + 146945980 146946147 L1PA4 6152 + 5984 6151 140670 167 chain 11910 chrX 155270560 + 146955612 146955773 L1PA8 5853 + 5694 5853 152555 45 3 2 19 1 0 93 chain 26717 chrX 155270560 + 146956646 146957015 THE1C 375 + 0 375 97269 63 1 0 4 11 16 59 0 4 44 1 0 160 1 0 25 chain 83949 chrX 155270560 + 146977779 146979047 LTR12D 1347 - 0 1347 41928 214 0 1 5 9 105 218 1 0 93 7 24 98 5 77 52 37 0 127 97 26 54 0 1 44 6 7 201 chain 7902 chrX 155270560 + 146987558 146987671 MER2 342 - 93 207 171633 26 3 0 68 2 6 14 chain 18338 chrX 155270560 + 147014428 147014637 L1PA3long 6157 - 8 220 131966 6 0 3 203 chain 24085 chrX 155270560 + 147021440 147021708 AluYa5 310 + 42 310 109834 268 chain 29137 chrX 155270560 + 147045092 147045411 AluYb8 318 + 0 310 88381 118 9 0 192 chain 47109 chrX 155270560 + 147048146 147048798 L1PA16 3655 + 2924 3584 61120 140 10 9 127 8 7 83 2 0 84 0 15 189 3 0 6 chain 488862 chrX 155270560 + 147049379 147055099 L1PA6 6164 + 428 6162 7414 32 1 3 37 11 10 153 0 1 190 0 1 1022 0 1 21 0 1 424 2 1 95 0 1 509 0 4 255 1 2 11 0 4 225 4 0 98 0 1 76 0 2 89 1 0 7 1 0 312 0 1 489 2 6 137 1 0 59 2 1 139 0 1 147 0 1 89 2 1 745 1 0 330 chain 357905 chrX 155270560 + 147066842 147071354 L1PA8 5853 - 0 5803 11403 9 5 0 83 6 5 12 1 13 42 1 0 10 1 0 71 2 0 48 1 0 551 9 7 786 2 1 286 3 1 233 0 1289 40 0 2 5 10 8 131 0 2 99 1 0 42 7 18 23 0 8 28 1 0 6 0 2 84 0 2 107 0 4 171 0 1 99 0 1 186 0 4 39 1 0 440 1 10 529 18 6 201 32 12 14 1 0 10 2 0 22 chain 160255 chrX 155270560 + 147073174 147074915 SVA_F 1814 - 0 1804 23301 627 1 0 10 1 0 49 0 1 121 0 64 932 chain 52579 chrX 155270560 + 147078672 147079292 L1PA7 6471 + 5004 5624 57247 620 chain 72112 chrX 155270560 + 147079293 147080120 L1PA7 6471 + 5629 6456 47428 827 chain 72865 chrX 155270560 + 147099077 147099883 L1PA3long 6157 - 0 821 47088 97 0 16 666 1 0 42 chain 60896 chrX 155270560 + 147099883 147100549 L1PA3long 6157 + 4685 5351 52266 666 chain 18281 chrX 155270560 + 147143923 147144211 L1MA2 4263 - 241 533 132123 30 9 6 13 10 19 96 1 2 44 1 0 3 2 0 79 chain 4741 chrX 155270560 + 147147044 147147102 L1MA4 2864 - 2748 2806 198001 58 chain 35571 chrX 155270560 + 147149851 147150261 L1PA5 6144 - 8 418 75448 132 0 1 192 1 0 85 chain 49613 chrX 155270560 + 147150261 147155314 L1PA5 6144 + 5486 6143 59308 197 4397 0 161 0 1 136 1 6 8 5 0 148 chain 5431 chrX 155270560 + 147160478 147160542 MER41B 635 - 93 157 190702 64 chain 35925 chrX 155270560 + 147164370 147164755 L1PA2 6032 - 1 386 74986 385 chain 77784 chrX 155270560 + 147164778 147165685 L1PA7 6471 - 20 940 44622 319 0 1 63 0 1 255 0 3 95 0 3 83 0 5 92 chain 20991 chrX 155270560 + 147171527 147171782 L1PA7 6471 - 5 261 123948 181 0 1 74 chain 22623 chrX 155270560 + 147186698 147187078 MSTA 426 + 0 426 117469 108 20 48 50 52 50 40 1 21 109 chain 23317 chrX 155270560 + 147189397 147189682 AluSp 311 - 16 301 114114 285 chain 542197 chrX 155270560 + 147204989 147210990 L1PA3long 6157 - 0 6153 2471 4 0 1 2229 0 1 4 1 0 3012 11 139 53 0 7 293 0 14 230 0 1 16 0 1 148 chain 22160 chrX 155270560 + 147212662 147213097 L1P5 443 + 3 437 119545 4 1 0 33 137 138 8 1 0 251 chain 15987 chrX 155270560 + 147213350 147213627 L1PB1 5432 + 5167 5420 138388 53 2 1 15 1 0 45 1 0 15 14 1 29 8 5 15 2 0 24 1 0 21 2 1 12 1 0 16 chain 53209 chrX 155270560 + 147220301 147221009 L1PA11 4918 + 3809 4503 56673 251 9 0 271 1 0 56 8 7 81 2 0 12 2 1 15 chain 114315 chrX 155270560 + 147221009 147222360 L1PA7 6471 - 803 2165 32991 47 2 0 288 3 2 97 1 12 640 0 3 273 chain 13546 chrX 155270560 + 147222360 147222511 L1PA7 6471 + 5674 5825 145525 151 chain 52829 chrX 155270560 + 147222529 147223145 L1PA7 6471 + 5843 6459 57118 616 chain 70905 chrX 155270560 + 147245436 147246235 L1PA5 6144 + 5345 6144 47963 799 chain 411801 chrX 155270560 + 147248657 147255226 L1PA4 6152 + 1459 6138 9750 1220 13 4 877 0 1 127 0 1 627 1885 0 299 0 1 1152 0 1 369 chain 171450 chrX 155270560 + 147251574 147253406 L1HS 6032 - 0 1832 21891 1832 chain 45623 chrX 155270560 + 147256847 147257664 L1PA14 3548 - 96 850 62381 37 1 0 4 0 1 8 35 4 5 1 0 15 4 2 35 4 0 10 1 0 61 15 5 36 13 12 52 53 40 6 0 6 108 2 0 5 2 0 61 3 1 24 1 0 131 0 1 84 chain 495059 chrX 155270560 + 147257677 147263612 L1PA7 6471 - 6 6061 7118 6 0 4 604 0 2 232 0 3 423 0 1 547 1 0 208 0 1 426 1 0 63 0 28 335 0 2 493 0 1 78 0 6 360 0 60 126 0 8 92 9 10 950 0 3 42 0 1 6 7 6 119 0 2 807 chain 11640 chrX 155270560 + 147264030 147264186 L1PREC2 3366 - 870 1038 153739 40 14 26 102 chain 32572 chrX 155270560 + 147269164 147269563 L1PA7 6471 - 3 401 79898 7 4 0 9 0 1 88 0 1 46 7 8 238 chain 3732 chrX 155270560 + 147274036 147274177 MER5B 177 - 30 163 211428 23 80 71 12 0 1 26 chain 12057 chrX 155270560 + 147286002 147286220 MER44A 345 + 94 323 151963 7 0 6 110 52 57 49 chain 5681 chrX 155270560 + 147301085 147301146 THE1D 372 - 311 372 188301 61 chain 92078 chrX 155270560 + 147315423 147316738 L1MA2 4263 + 2709 4043 38946 89 7 22 88 1 2 23 4 0 135 0 2 47 11 12 4 1 0 159 1 8 32 0 2 14 0 1 212 33 32 69 1 0 69 10 11 66 3 0 53 4 5 92 1 0 6 2 1 78 chain 182102 chrX 155270560 + 147320522 147322616 L1PA6 6164 + 4068 6162 20771 246 2 1 107 0 1 76 0 2 145 2 0 1516 chain 117573 chrX 155270560 + 147335286 147336826 THE1C-int 1605 + 0 1600 31935 96 0 57 17 3 0 162 0 4 99 10 17 234 7 8 60 17 11 835 chain 4358 chrX 155270560 + 147337992 147338044 L1PA8 5853 - 0 52 202465 52 chain 93674 chrX 155270560 + 147338089 147339144 MER11C 1089 - 34 1089 38449 1055 chain 146580 chrX 155270560 + 147339159 147341022 L1PA7 6471 - 72 2984 25075 172 24 23 72 0 1 235 0 2 51 3 2 33 0 3 80 1 3 101 2 0 403 0 1040 175 0 1 44 0 5 456 1 0 10 chain 74693 chrX 155270560 + 147341022 147341973 L1PA7 6471 - 5105 6059 45974 640 13 18 59 2 1 35 1 0 201 chain 30564 chrX 155270560 + 147341982 147342357 L1PA7 6471 - 6059 6434 83273 375 chain 33678 chrX 155270560 + 147348705 147349154 L1PA8 5853 - 0 445 78130 93 1 0 17 1 0 36 14 13 15 1 0 20 0 2 49 5 3 41 1 0 43 0 1 112 chain 33896 chrX 155270560 + 147349154 147349571 L1PA8 5853 + 4988 5406 77778 18 0 1 399 chain 234918 chrX 155270560 + 147356577 147360015 L1PA13 3608 + 90 3488 17034 19 6 4 23 5 2 26 2 1 12 3 0 24 28 17 71 8 6 118 1 0 15 1 0 17 2 0 15 7 3 13 1 0 22 10 8 10 2 0 19 10 9 87 2 0 74 7 6 4 0 1 186 1 0 198 0 1 181 0 1 14 8 14 164 0 1 36 22 26 120 0 1 105 0 8 258 0 2 85 0 1 234 3 4 52 25 10 221 5 6 182 0 4 137 10 13 147 1 0 32 1 0 114 3 1 61 1 0 55 13 5 48 19 13 9 1 0 22 chain 19069 chrX 155270560 + 147379906 147380267 THE1B 368 + 0 368 129907 111 13 15 51 76 82 47 7 6 56 chain 527780 chrX 155270560 + 147381288 147387384 L1PA4 6152 - 9 6151 4421 138 1 8 145 0 1 1016 5 6 477 0 4 185 6 7 211 1 0 264 1 0 271 0 14 219 2 1 856 7 20 1063 4 5 77 1 8 1146 chain 532522 chrX 155270560 + 147407045 147413123 L1PA4 6152 - 22 6144 3906 143 0 1 134 0 1 1222 1 0 583 0 38 1270 0 5 419 0 1 248 0 1 4 1 0 49 0 1 1508 1 0 293 2 1 200 chain 526940 chrX 155270560 + 147428461 147434546 L1PA5 6144 - 7 6129 4509 165 0 23 360 6 6 439 0 5 434 1 0 225 0 2 407 0 1 396 1 0 478 1 2 887 0 1 110 1 0 966 0 1 81 1 8 664 1 0 461 chain 3266 chrX 155270560 + 147439070 147439116 MLT2D 439 - 13 54 219656 35 5 0 6 chain 139475 chrX 155270560 + 147440261 147441818 L1PA3long 6157 - 1397 2960 26225 248 2 8 1307 chain 124600 chrX 155270560 + 147441818 147443203 L1PA3long 6157 + 4769 6157 29478 49 0 1 495 0 1 699 0 1 142 chain 44480 chrX 155270560 + 147450039 147450709 L1PB2 3958 + 3154 3818 63601 79 1 6 65 5 3 56 1 0 11 4 0 65 2 0 12 5 0 21 0 9 49 18 19 4 0 1 5 3 0 58 1 0 64 2 1 67 2 0 25 2 1 43 chain 130479 chrX 155270560 + 147458846 147460275 L1PA3long 6157 - 0 1429 27969 1429 chain 27742 chrX 155270560 + 147483574 147483941 THE1B 368 - 0 368 93898 174 1 0 21 2 1 130 0 5 22 2 0 15 chain 24505 chrX 155270560 + 147484244 147484575 THE1C 375 - 1 329 107518 17 8 7 164 2 3 59 3 0 78 chain 44407 chrX 155270560 + 147488517 147489026 L1PA4 6152 + 5642 6152 63683 351 1 3 135 1 0 21 chain 4198 chrX 155270560 + 147490900 147491030 L1MA8 2339 + 2160 2279 204572 36 6 0 12 26 25 14 10 9 9 3 0 14 chain 23787 chrX 155270560 + 147556447 147556716 AluY 311 + 12 281 111547 269 chain 19413 chrX 155270560 + 147566307 147566653 L1PB1 5432 + 5105 5419 128911 9 1 0 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 43 1 0 16 14 1 28 2 0 7 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 0 1 5 chain 4538 chrX 155270560 + 147607700 147607753 L1MC4 1079 - 775 828 200354 53 chain 4010 chrX 155270560 + 147632173 147632220 Tigger5 388 + 306 353 207241 47 chain 71194 chrX 155270560 + 147640798 147641660 L1PA7 6471 - 3 860 47847 10 1 4 32 10 9 22 3 0 260 2 0 421 1 0 89 1 0 10 chain 47178 chrX 155270560 + 147641660 147642203 L1PA7 6471 + 5052 5609 60875 168 0 14 375 chain 97336 chrX 155270560 + 147698097 147699169 L1PA4 6152 - 1 1079 37473 112 0 1 690 0 1 185 0 4 85 chain 28989 chrX 155270560 + 147738014 147738320 AluYa5 310 - 5 310 89042 187 1 0 118 chain 119300 chrX 155270560 + 147749351 147750916 THE1B-int 1605 - 1 1603 31292 583 9 11 186 39 46 67 22 23 234 1 0 4 1 27 406 0 2 13 chain 36514 chrX 155270560 + 147775433 147775850 L1PA3long 6157 + 5737 6157 74223 270 0 2 40 0 1 107 chain 20573 chrX 155270560 + 147777743 147777974 L1PA5 6144 + 5904 6135 125386 231 chain 90928 chrX 155270560 + 147813123 147814112 L1PA2 6032 + 5044 6032 39315 732 1 0 256 chain 415778 chrX 155270560 + 147817160 147822615 L1PB1 5432 - 8 5413 9647 4 1 0 16 1 0 12 2 1 21 1 0 24 2 0 14 1 0 4 3 1 19 14 5 7 3 0 16 1 0 43 22 20 47 30 23 13 1 0 17 16 14 395 1 0 78 0 1 197 0 1 475 1 0 183 9 10 97 0 1 139 1 0 517 0 1 174 2 0 334 1 0 457 0 3 370 2 1 13 14 1 106 4 8 127 0 5 7 17 0 7 1 0 870 13 17 97 1 2 95 1 0 254 13 14 27 chain 14128 chrX 155270560 + 147843592 147843964 L1PB1 5432 - 9 324 144115 5 1 0 14 1 0 13 8 7 14 1 0 24 1 0 14 1 0 5 3 1 18 15 6 6 2 0 8 8 7 45 25 23 45 2 0 9 6 2 13 3 2 4 1 0 21 27 0 9 chain 92444 chrX 155270560 + 147847231 147848247 L1PA3long 6157 - 1 1017 38829 1016 chain 518820 chrX 155270560 + 147857388 147863665 L1PA7 6471 - 4 6468 5290 767 0 2 83 8 10 324 1 0 164 0 1 294 0 4 106 0 1 777 0 3 5 3 0 91 13 0 86 0 16 230 1 0 126 0 8 633 0 98 1300 1 0 113 0 1 7 0 4 206 0 24 356 0 29 33 2 0 302 33 48 212 chain 86093 chrX 155270560 + 147911959 147913045 MER11B 1079 - 5 1079 41123 17 11 0 26 0 1 45 1 0 5 3 4 207 1 3 15 0 1 151 23 17 105 0 1 476 chain 12010 chrX 155270560 + 147941355 147941492 L1PA6 6164 - 3 140 152153 137 chain 3823 chrX 155270560 + 147954103 147954146 L1MB7 1623 - 482 525 210034 43 chain 56028 chrX 155270560 + 147987921 147988683 LTR17 781 + 0 781 55101 59 1 0 97 1 0 22 4 3 146 1 0 356 5 27 8 0 1 9 9 10 17 14 13 13 chain 95058 chrX 155270560 + 147988946 147990018 MER11C 1089 - 16 1089 38075 473 0 1 599 chain 12238 chrX 155270560 + 147990290 147990458 MER58B 340 + 91 263 151267 9 0 1 19 7 10 133 chain 14444 chrX 155270560 + 147993717 147993907 L1PA8A 6298 - 10 200 143066 95 7 0 8 0 6 20 0 1 60 chain 23102 chrX 155270560 + 148029995 148030340 MER83B 357 - 20 357 115137 69 0 4 29 0 9 90 21 8 10 16 7 55 0 1 55 chain 130862 chrX 155270560 + 148053303 148054695 L1HS 6032 - 1 1393 27898 1392 chain 5230 chrX 155270560 + 148168349 148168410 LTR12_ 688 - 0 61 192731 61 chain 200543 chrX 155270560 + 148169200 148171471 L1PA5 6144 + 3850 6137 19171 932 0 1 145 0 4 82 0 1 196 0 1 4 1 0 727 0 2 164 0 8 20 chain 8870 chrX 155270560 + 148183443 148183640 Tigger16b 258 + 39 232 166286 20 58 55 70 8 7 41 chain 5836 chrX 155270560 + 148185989 148186691 L1MD2 1676 - 585 1253 186802 21 298 268 30 292 288 61 chain 186840 chrX 155270560 + 148191551 148193932 L1PA8A 6298 + 2529 6291 20346 103 2 0 5 1 3 596 0 13 225 0 1 91 0 1 307 1 2 12 0 1352 116 2 0 21 0 3 15 2 1 92 0 3 232 0 6 446 45 49 67 chain 79204 chrX 155270560 + 148194700 148195986 LTR12D 1347 - 0 1347 43943 102 1 0 144 43 117 273 0 17 45 0 41 40 1 32 197 136 32 29 1 0 4 61 64 65 19 20 125 chain 2203 chrX 155270560 + 148195649 148195674 LTR12D 1347 - 1040 1065 236542 25 chain 18257 chrX 155270560 + 148204580 148204794 L1PA5 6144 + 5930 6144 132182 214 chain 111578 chrX 155270560 + 148240360 148241834 THE1C-int 1605 - 0 1533 33785 47 0 1 53 2 3 534 0 38 145 0 7 25 6 0 300 5 12 103 8 14 148 0 3 45 7 9 46 chain 91499 chrX 155270560 + 148250156 148251215 MER11C 1089 - 16 1089 39132 170 1 0 574 0 2 175 0 13 139 chain 69007 chrX 155270560 + 148254682 148255483 L1PA5 6144 - 2 805 48801 468 0 2 333 chain 19582 chrX 155270560 + 148255491 148255719 THE1D-int 1627 - 1342 1570 128428 228 chain 562320 chrX 155270560 + 148259696 148265715 L1HS 6032 - 1 6020 288 3840 1 0 502 0 1 1676 chain 4427 chrX 155270560 + 148273442 148273928 L1PA10 4194 - 44 531 59422 33 4 1 214 0 3 151 1 0 12 5 7 66 chain 39702 chrX 155270560 + 148273929 148274399 L1PA5 6144 - 4345 4815 69751 470 chain 356793 chrX 155270560 + 148274404 148278582 L1PA5 6144 + 1952 6130 11439 283 6 7 137 0 4 383 7 11 389 10 12 215 6 1 210 2 0 69 3 0 1243 0 1 225 4 1 180 0 1 806 chain 2232 chrX 155270560 + 148278626 148278871 L1PA10 4194 - 531 777 59422 42 0 1 203 chain 85336 chrX 155270560 + 148296586 148297503 L1PA2 6032 - 4 925 41404 848 0 4 69 chain 289558 chrX 155270560 + 148307502 148311430 L1PA10 4194 - 152 4019 14048 179 1 5 530 8 7 663 0 2 6 3 4 34 1 2 229 4 0 786 0 1 105 13 14 741 0 2 242 16 8 32 0 1 4 1 0 42 4 1 7 7 0 13 3 0 8 1 0 11 1 2 5 1 0 21 2 0 16 51 25 7 1 0 16 9 7 14 1 0 8 1 0 10 2 0 10 23 17 8 3 0 12 2 0 10 chain 116300 chrX 155270560 + 148333206 148334759 THE1B-int 1605 - 0 1605 32343 198 5 19 41 1 2 5 1 0 217 6 7 452 0 1 4 5 4 121 0 10 23 0 1 30 11 38 358 1 0 74 chain 73922 chrX 155270560 + 148346326 148347186 L1PA5 6144 - 1330 2204 46552 19 0 12 161 1 0 211 0 1 61 6 7 76 0 1 325 chain 111401 chrX 155270560 + 148347192 148348449 L1PA5 6144 + 4876 6144 33835 151 1 0 1090 0 12 15 chain 8078 chrX 155270560 + 148358940 148359035 L1PA7 6471 + 6364 6459 170600 95 chain 9961 chrX 155270560 + 148374168 148374294 MSTC 436 - 306 433 160769 80 0 1 46 chain 4848 chrX 155270560 + 148384813 148384950 Tigger4a 237 + 4 141 196809 44 39 56 13 17 0 24 chain 5881 chrX 155270560 + 148393764 148393844 MADE1 96 + 0 96 186357 33 3 19 44 chain 29776 chrX 155270560 + 148397135 148397556 LTR7B 505 + 0 497 85559 105 0 10 60 0 38 12 3 27 26 0 2 42 0 1 42 1 0 2 0 2 19 4 5 48 14 13 43 chain 293773 chrX 155270560 + 148397608 148401225 HERVH-int 3825 + 44 3825 13781 488 5 0 38 126 0 10 1 0 24 1 52 42 2 1 80 5 4 640 0 1 5 9 0 29 0 2 10 1 0 215 4 31 24 0 2 276 0 10 1042 9 11 22 0 1 16 8 218 260 0 2 225 chain 1795 chrX 155270560 + 148398177 148398221 HERVH-int 3825 + 488 532 190746 44 chain 1164 chrX 155270560 + 148398221 148398252 HERVH-int 3825 + 471 500 197712 18 2 0 11 chain 2931 chrX 155270560 + 148401912 148401945 LTR7Y 441 + 408 441 226494 33 chain 57508 chrX 155270560 + 148402445 148403204 MER4E1 777 + 0 770 54234 24 2 0 139 3 0 8 0 3 70 1 2 11 1 11 24 0 3 243 3 0 12 13 15 205 chain 542087 chrX 155270560 + 148415539 148421553 L1PA3long 6157 + 0 6156 2490 153 3 11 550 0 1 61 0 128 245 7 9 2011 1 0 991 0 3 1143 0 1 849 chain 24248 chrX 155270560 + 148429720 148430120 LTR39 781 + 0 496 108955 16 33 36 134 29 121 89 8 9 91 chain 131040 chrX 155270560 + 148430158 148431619 L1PA4 6152 + 4689 6152 27849 406 0 1 801 0 1 254 chain 23697 chrX 155270560 + 148438257 148438623 THE1B 368 + 0 368 112049 169 2 0 17 21 28 16 1 0 10 1 0 66 14 13 49 chain 111284 chrX 155270560 + 148438623 148440256 THE1B-int 1605 + 0 1605 33864 15 2 3 97 59 0 158 1 7 12 1 2 92 11 75 248 1 0 34 0 1 56 33 0 52 15 8 436 18 15 92 1 2 88 0 1 111 chain 7594 chrX 155270560 + 148440940 148441034 L1MA3 4352 - 998 1092 173586 94 chain 27467 chrX 155270560 + 148450337 148450730 THE1C 375 + 0 375 94753 14 2 0 33 15 2 4 1 0 32 0 1 99 3 0 190 chain 49060 chrX 155270560 + 148463987 148464535 L1PA3long 6157 + 5608 6156 59705 548 chain 3982 chrX 155270560 + 148479294 148479444 MER3 215 - 8 164 207651 35 91 97 24 chain 84991 chrX 155270560 + 148481731 148483025 L1PB1 5432 + 4204 5422 41513 296 18 12 20 9 1 91 17 13 175 3 1 184 1 0 57 0 1 7 1 0 23 4 0 9 19 9 12 10 0 19 1 0 10 1 0 14 4 0 10 2 0 68 1 0 45 1 0 15 1 0 4 22 11 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 13 1 0 5 chain 2518 chrX 155270560 + 148485879 148485946 MER115 684 - 58 107 232929 6 0 2 15 24 4 22 chain 145776 chrX 155270560 + 148501687 148503323 SVA_F 1814 + 0 1812 25210 582 0 1 27 0 37 240 0 1 13 0 64 50 0 78 704 3 0 7 2 0 8 chain 538499 chrX 155270560 + 148517368 148523352 L1PA3long 6157 + 6 6149 3069 63 0 1 65 5 20 100 0 1 311 0 4 206 1 129 1142 0 1 158 0 2 2481 0 1 225 0 6 1227 chain 7757 chrX 155270560 + 148526963 148527075 L1PREC2 3366 - 528 638 172561 31 2 1 31 0 1 22 2 0 24 chain 264534 chrX 155270560 + 148528335 148532247 L1PA11 4918 - 411 4908 15461 19 1 0 16 2 0 64 3 2 11 1 0 60 0 2 2 1 0 14 0 4 107 17 22 492 1 0 104 364 3 73 0 9 66 0 1 64 0 1 17 5 4 40 0 1 216 7 12 168 0 1 141 8 9 54 0 1 439 12 8 40 6 7 398 3 0 68 0 4 300 0 937 208 2 1 73 1 0 5 2 1 5 2 0 35 1 0 50 2 0 15 1 0 34 9 8 29 2 0 32 chain 4463 chrX 155270560 + 148548293 148548351 MLT2B1 522 + 463 520 201200 16 1 0 41 chain 8763 chrX 155270560 + 148551989 148552161 MER53 195 - 7 171 166851 7 10 0 52 30 32 73 chain 9039 chrX 155270560 + 148580150 148580528 L1MB7 1623 + 1050 1429 165383 61 19 20 39 39 38 15 170 171 35 chain 76271 chrX 155270560 + 148634047 148634923 MER11D 897 - 0 897 45327 191 2 0 96 1 24 586 chain 46768 chrX 155270560 + 148635376 148635987 MER51C 639 + 6 613 61400 182 2 1 94 22 19 311 chain 93392 chrX 155270560 + 148645500 148646558 MER11C 1089 + 0 1072 38538 225 0 5 369 0 1 209 0 8 255 chain 34571 chrX 155270560 + 148655995 148656387 L1PA7 6471 - 58 450 76789 392 chain 7189 chrX 155270560 + 148688569 148688654 MER2 342 - 6 91 176145 85 chain 23319 chrX 155270560 + 148701634 148701885 L1PA3long 6157 + 5461 5712 114104 251 chain 34232 chrX 155270560 + 148719230 148719681 MLT2A1 477 - 0 477 77309 60 12 41 206 4 1 169 chain 27013 chrX 155270560 + 148720262 148720635 L1PB2 3958 - 120 491 96243 60 6 5 20 2 0 72 1 0 48 4 7 9 1 0 150 chain 25614 chrX 155270560 + 148727155 148727446 AluSp 311 - 17 311 101654 200 0 3 91 chain 24258 chrX 155270560 + 148732306 148732662 THE1B 368 + 0 368 108903 44 0 15 79 0 4 24 1 0 3 1 0 25 23 15 85 1 0 63 0 4 7 chain 5400 chrX 155270560 + 148732821 148732886 MER50 708 + 602 667 190977 65 chain 3239 chrX 155270560 + 148749993 148750031 L1MC2 1988 + 1395 1433 220238 38 chain 6091 chrX 155270560 + 148755088 148755167 L1PA7 6471 + 6394 6470 184484 67 3 0 9 chain 16594 chrX 155270560 + 148757284 148757718 LTR22C 500 - 26 488 136685 38 14 15 17 63 80 65 2 5 17 31 33 34 1 0 4 0 1 6 24 24 31 0 4 36 12 16 7 3 0 29 chain 283382 chrX 155270560 + 148757730 148762262 HERVK22-int 3844 - 0 3844 14444 21 1 0 68 6 5 88 818 192 5 1 0 28 12 8 18 65 48 7 1 0 10 2 0 5 2 0 3 2 0 7 2 0 10 26 15 20 2 0 39 15 10 39 2 0 20 1 0 36 1 0 17 1 0 7 1 0 74 1 0 467 1 2 91 0 1 13 1 0 114 0 1 59 1 0 25 2 1 56 1 0 691 14 14 1469 3 0 40 chain 10960 chrX 155270560 + 148764488 148764646 LTR26 622 - 0 159 156358 44 12 13 102 chain 21253 chrX 155270560 + 148766250 148766582 THE1C 375 + 0 335 123011 77 5 6 41 3 0 57 0 1 9 1 0 12 10 13 67 9 11 41 chain 28670 chrX 155270560 + 148766589 148766896 AluYa5 310 - 5 310 90451 179 2 0 126 chain 22924 chrX 155270560 + 148774369 148774693 THE1B 368 + 1 340 115990 43 0 15 107 5 4 30 13 9 97 8 13 21 chain 3421 chrX 155270560 + 148774879 148774920 L1MCc 1008 - 555 596 216742 41 chain 130870 chrX 155270560 + 148782235 148783664 L1PA3long 6157 - 8 1437 27891 1429 chain 283504 chrX 155270560 + 148804336 148808868 HERVK22-int 3844 + 0 3844 14433 40 3 0 1469 14 14 691 1 0 56 2 1 25 1 0 57 0 1 116 1 0 13 0 1 91 1 2 470 1 0 71 1 0 7 1 0 17 1 0 36 1 0 20 2 0 39 15 10 41 2 0 18 26 15 10 2 0 7 2 0 5 2 0 3 2 0 10 1 0 7 65 48 18 12 8 28 1 0 5 818 192 88 6 5 68 1 0 21 chain 6091 chrX 155270560 + 148811431 148811510 L1PA7 6471 - 1 77 184485 9 3 0 67 chain 234690 chrX 155270560 + 148832322 148835554 HERVL-int 5654 - 2734 5652 17049 54 330 0 376 0 1 172 1 13 658 0 1 117 3 0 340 1 2 352 0 1 167 0 4 557 1 0 35 2 1 6 0 1 60 chain 120056 chrX 155270560 + 148840057 148841607 LTR12C 1709 + 0 1709 31039 139 3 13 104 7 8 74 19 62 250 0 119 68 1 0 273 1 0 7 3 1 106 11 4 179 11 0 151 1 0 22 0 10 32 2 1 86 chain 26491 chrX 155270560 + 148846483 148846842 THE1A 353 + 0 353 98077 84 2 1 21 5 4 89 4 0 154 chain 34662 chrX 155270560 + 148876319 148876712 L1PA7 6471 + 6020 6413 76673 393 chain 343418 chrX 155270560 + 148902358 148906424 L1PA5 6144 - 4 5931 11803 110 11 0 388 0 1877 568 0 1 537 0 1 86 0 3 188 0 3 70 6 0 512 4 0 626 9 0 180 0 9 94 2 3 34 9 5 632 chain 42109 chrX 155270560 + 148957530 148960227 HERVIP10FH-int 2884 + 149 707 66491 60 6 0 189 4 0 116 2132 0 120 0 3 70 chain 41394 chrX 155270560 + 148957912 148958420 LTR10C 591 + 2 591 67420 104 0 72 332 0 2 11 11 18 50 chain 13269 chrX 155270560 + 148959731 148959910 HERVIP10FH-int 2884 + 209 389 147215 78 7 8 94 chain 9394 chrX 155270560 + 148959910 148960028 HERVIP10FH-int 2884 + 390 503 163593 9 5 0 104 chain 43687 chrX 155270560 + 148962489 148963006 LTR10C 591 + 0 591 64583 106 0 72 323 7 9 81 chain 153611 chrX 155270560 + 148963015 148964880 Harlequin-int 5206 + 602 2470 24144 63 0 2 15 1 0 340 0 2 18 6 8 240 10 8 509 0 1 130 2 0 235 4 6 81 1 0 210 chain 31125 chrX 155270560 + 148965429 148965894 LTR10F 562 + 0 562 82295 32 1 5 116 1 29 47 0 24 11 33 39 76 4 7 57 0 32 87 chain 45125 chrX 155270560 + 148979772 148980571 L1PB1 5432 + 4741 5420 62904 359 6 5 9 91 0 24 1 0 6 30 23 53 2 1 16 1 0 43 1 0 16 4 0 16 8 0 15 26 24 19 1 0 21 1 0 13 1 0 16 chain 23749 chrX 155270560 + 148984771 148985048 L1PA6 6164 - 8 285 111781 277 chain 30782 chrX 155270560 + 148992920 148993457 L1PA15 4387 + 3840 4366 82899 50 2 0 36 7 6 74 1 0 85 14 13 26 1 0 48 2 7 17 4 0 15 1 0 24 34 32 41 3 1 41 1 0 10 chain 20049 chrX 155270560 + 148996045 148996267 L1PA5 6144 - 169 391 126981 222 chain 14105 chrX 155270560 + 148996267 148996428 L1PA5 6144 + 5978 6139 144198 161 chain 71401 chrX 155270560 + 149001382 149002519 L1PA13 3608 + 2438 3548 47747 108 6 8 63 15 17 113 0 1 178 4 0 27 1 2 52 7 11 114 1 0 23 5 4 112 6 4 61 1 0 20 2 0 35 1 0 5 2 0 39 8 6 7 2 0 20 73 57 10 1 0 1 2 0 12 chain 32104 chrX 155270560 + 149019470 149019840 L1PA5 6144 - 4 375 80683 328 0 1 42 chain 47279 chrX 155270560 + 149082131 149082907 L1PA7 6471 + 5664 6470 60981 17 16 17 26 5 6 54 12 29 23 5 13 34 55 57 32 40 40 127 0 1 330 chain 46760 chrX 155270560 + 149093273 149093883 MER51C 639 - 27 633 61404 310 22 19 94 2 1 182 chain 76402 chrX 155270560 + 149094336 149095212 MER11D 897 + 0 897 45261 593 1 24 92 2 0 188 chain 34475 chrX 155270560 + 149119630 149120130 MER4B 649 - 108 649 76950 32 0 8 77 7 5 35 11 5 8 0 4 175 19 57 28 1 0 107 chain 7061 chrX 155270560 + 149123692 149123773 L1PA7 6471 + 6380 6461 177024 81 chain 38579 chrX 155270560 + 149126700 149127407 L1PB1 5432 - 10 656 71324 18 1 0 12 1 0 22 1 0 22 2 0 16 1 0 5 3 1 18 40 29 43 1 0 15 2 1 8 1 0 4 0 1 15 0 1 22 19 13 12 1 0 10 1 0 5 61 26 148 0 2 177 chain 50411 chrX 155270560 + 149142038 149142582 L1PA2 6032 - 0 544 58703 544 chain 24742 chrX 155270560 + 149142582 149142847 L1PA2 6032 + 5235 5500 106212 265 chain 6782 chrX 155270560 + 149152571 149152644 L1PA3long 6157 - 15 88 179092 73 chain 13606 chrX 155270560 + 149190132 149190279 L1PA2 6032 - 18 165 145952 147 chain 50643 chrX 155270560 + 149190297 149190844 L1PA2 6032 + 5321 5868 58543 547 chain 118278 chrX 155270560 + 149192999 149194287 L1PA3long 6157 - 0 1290 31698 332 0 1 438 0 1 518 chain 12928 chrX 155270560 + 149202267 149202411 L1PA5 6144 + 5997 6141 148510 144 chain 4804 chrX 155270560 + 149206024 149206091 MER74A 558 + 393 455 197317 40 5 0 22 chain 99952 chrX 155270560 + 149210788 149212666 L1MA2 4263 - 185 1733 36792 20 7 0 92 1 0 9 12 22 80 1 2 47 13 10 134 1 0 37 51 47 148 2 1 125 0 1 34 32 0 20 0 14 18 13 15 297 10 30 41 320 0 59 1 0 13 0 3 57 5 0 52 8 6 64 4 0 50 chain 493811 chrX 155270560 + 149234362 149239855 L1PA4 6152 - 9 5520 7186 251 1 0 73 1 2 626 0 15 56 0 1 1039 1 0 1767 0 1 828 0 2 850 chain 59271 chrX 155270560 + 149246622 149247346 L1PA8 5853 - 0 717 53242 16 0 1 76 1 0 19 2 1 51 2 0 10 1 0 71 2 0 44 1 0 428 chain 12280 chrX 155270560 + 149253907 149254054 L1PA7 6471 - 6 155 151077 136 0 1 4 0 1 7 chain 31796 chrX 155270560 + 149259428 149259788 L1PA5 6144 - 17 384 81176 291 0 7 69 chain 97012 chrX 155270560 + 149272476 149273593 L1P1 4361 - 20 1134 37561 12 2 1 23 1 0 155 1 0 76 1 0 120 1 3 448 1 0 276 chain 10117 chrX 155270560 + 149275148 149275340 L1PB1 5432 - 37 243 160005 4 1 0 21 1 0 24 2 0 14 8 5 15 9 31 20 0 1 23 1 0 18 1 0 30 chain 8144 chrX 155270560 + 149276291 149276537 AluJr4 308 - 18 128 170266 93 117 0 6 19 0 11 chain 404947 chrX 155270560 + 149289781 149295179 L1PB1 5432 + 59 5399 9949 226 1 0 40 1 0 204 0 8 71 1 0 643 0 3 141 1 0 8 2 0 6 42 40 36 11 2 1005 0 1 48 0 4 297 8 0 498 1 2 167 0 1 213 43 12 217 4 5 67 11 3 35 0 5 238 0 1 158 12 17 87 0 4 54 1 0 8 9 0 64 2 1 98 1 0 6 0 1 30 28 9 4 1 0 190 16 16 50 38 59 6 2 0 9 0 3 40 2 1 16 1 0 43 1 0 16 1 0 4 25 17 10 8 5 14 2 0 24 1 0 21 1 0 8 chain 155870 chrX 155270560 + 149299638 149301330 L1PA2 6032 - 0 1692 23821 1692 chain 158008 chrX 155270560 + 149301330 149303045 L1PA2 6032 + 2605 4320 23590 1715 chain 68967 chrX 155270560 + 149305943 149306708 L1PA4 6152 - 9 774 48824 765 chain 71072 chrX 155270560 + 149309577 149310392 L1PA7 6471 - 13 828 47901 815 chain 290975 chrX 155270560 + 149337144 149340305 L1PA3long 6157 - 11 3173 13963 1060 0 1 2101 chain 50546 chrX 155270560 + 149344661 149345232 L1PA4 6152 - 9 595 58615 30 0 15 541 chain 17701 chrX 155270560 + 149373652 149373862 L1PA5 6144 - 0 206 133700 12 5 1 193 chain 26068 chrX 155270560 + 149410275 149410573 AluSp 311 + 8 304 99759 275 2 0 21 chain 14006 chrX 155270560 + 149418385 149418536 L1PA3long 6157 - 919 1070 143912 151 chain 82896 chrX 155270560 + 149418536 149419462 L1PA3long 6157 + 5234 6157 42381 559 3 0 364 chain 32003 chrX 155270560 + 149419468 149419828 L1PA5 6144 + 5761 6122 80860 214 0 1 146 chain 4062 chrX 155270560 + 149435153 149435247 MADE1 96 - 0 96 206457 23 34 36 37 chain 14575 chrX 155270560 + 149442554 149442773 THE1B 368 + 139 362 142667 27 9 8 24 0 3 8 1 5 16 1 0 9 2 1 122 chain 9789 chrX 155270560 + 149446879 149447119 L1MA5A 2387 - 28 226 161657 19 12 10 13 22 14 7 1 0 64 48 17 34 2 0 11 0 2 7 chain 26887 chrX 155270560 + 149453428 149453738 AluYb8 318 + 10 315 96680 53 2 0 247 3 0 5 chain 7489 chrX 155270560 + 149502005 149502119 MER45A 178 + 29 146 174215 18 1 2 74 6 8 15 chain 142871 chrX 155270560 + 149535828 149537401 L1PA5 6144 - 4 1572 25669 12 3 0 97 1 0 736 2 1 722 chain 3514 chrX 155270560 + 149545514 149545557 MIR3 191 + 70 113 215153 43 chain 4860 chrX 155270560 + 149555699 149555757 Tigger2 2703 - 1615 1673 196681 58 chain 79095 chrX 155270560 + 149568608 149569474 L1PA2 6032 - 1885 2751 43954 866 chain 171441 chrX 155270560 + 149569474 149571353 L1PA2 6032 + 4152 6032 21893 1714 5 0 8 0 6 152 chain 82995 chrX 155270560 + 149585286 149586200 L1PA3long 6157 - 0 915 42296 95 0 1 819 chain 317913 chrX 155270560 + 149586200 149589725 L1HS 6032 - 2492 6021 12677 491 0 1 2311 0 1 334 0 2 144 1 0 85 0 1 159 chain 29426 chrX 155270560 + 149620867 149621191 L1PA2 6032 - 0 324 86949 324 chain 6368 chrX 155270560 + 149657803 149657882 MADE1 96 - 1 96 182258 33 0 16 46 chain 15202 chrX 155270560 + 149686178 149686452 MLT2C1 407 - 132 407 140771 12 1 0 49 1 0 44 28 20 32 1 11 55 14 15 37 chain 4391 chrX 155270560 + 149714178 149714230 MER53 195 - 123 175 202064 52 chain 23087 chrX 155270560 + 149732850 149733129 AluSc 308 - 27 307 115208 6 0 1 120 2 0 5 0 2 146 chain 3274 chrX 155270560 + 149744096 149744130 MER5A 189 - 79 113 219471 34 chain 10076 chrX 155270560 + 149760072 149760200 MER85 139 + 0 139 160192 96 0 6 6 0 5 26 chain 85571 chrX 155270560 + 149825129 149826102 L1PA5 6144 + 5162 6143 41316 85 0 1 49 0 4 592 1 0 106 0 7 25 1 0 101 3 1 10 chain 87184 chrX 155270560 + 149837404 149838454 L1PA8A 6298 - 7 1065 40697 132 0 1 276 0 2 46 0 9 268 8 7 59 14 11 247 chain 15578 chrX 155270560 + 149846525 149846853 MER44A 345 - 8 339 139642 87 1 0 65 5 8 29 64 0 11 22 87 44 chain 13306 chrX 155270560 + 149848402 149848559 L1PA4 6152 + 5992 6151 147060 16 1 3 140 chain 68223 chrX 155270560 + 149891326 149892075 L1PA3long 6157 - 0 747 49150 332 2 1 126 1 0 288 chain 45837 chrX 155270560 + 149893209 149893961 L1PREC2 3366 - 324 1051 62188 32 6 4 35 61 51 14 12 7 11 31 21 13 3 0 4 1 0 44 1 0 54 1 6 29 1 0 15 1 4 383 chain 2544 chrX 155270560 + 149911520 149911587 L1MB3 1562 + 1486 1552 232553 14 24 23 29 chain 45498 chrX 155270560 + 149945215 149945882 MER4A 717 - 10 717 62499 94 4 5 22 0 1 14 1 2 70 12 0 9 1 0 23 6 0 59 1 41 87 15 30 44 0 1 82 2 1 78 0 1 43 chain 17563 chrX 155270560 + 149951557 149951772 L1PA7 6471 + 6250 6457 134089 75 8 0 132 chain 32765 chrX 155270560 + 149955959 149956361 L1PA6 6164 + 5746 6148 79586 258 14 14 130 chain 12378 chrX 155270560 + 149956563 149956713 L1PREC2 3366 + 1766 1916 150721 150 chain 3116 chrX 155270560 + 149956745 149956804 L1ME2z 1083 - 703 761 222623 24 10 9 25 chain 3227 chrX 155270560 + 149959696 149959817 L1MC3 1789 + 998 1118 220470 9 1 0 16 65 65 30 chain 5831 chrX 155270560 + 149968928 149969000 MER2 342 + 136 209 186850 31 0 1 41 chain 57798 chrX 155270560 + 149985049 149985680 L1PA3long 6157 + 5526 6157 54083 631 chain 24241 chrX 155270560 + 149991315 149991683 THE1C 375 + 0 375 108988 142 13 17 28 34 36 83 0 2 42 1 0 25 chain 19516 chrX 155270560 + 149991684 149992367 MSTC 436 - 0 353 128609 38 335 0 69 20 16 37 42 43 73 5 13 64 chain 12823 chrX 155270560 + 150005188 150005350 Tigger3a 397 - 71 237 148966 143 0 4 19 chain 4003 chrX 155270560 + 150011145 150011324 MER3 215 - 11 200 207344 14 0 102 14 109 17 42 chain 24375 chrX 155270560 + 150029338 150029632 AluY 311 + 0 300 108218 47 0 6 66 1 0 7 0 1 173 chain 15615 chrX 155270560 + 150030015 150030538 L1P3 4156 + 3600 3802 139533 64 331 0 106 0 10 22 chain 3672 chrX 155270560 + 150041082 150041124 MER66B 489 + 295 337 212354 42 chain 25653 chrX 155270560 + 150044100 150044453 THE1B 368 + 0 368 101480 44 9 24 101 7 6 73 8 9 111 chain 8414 chrX 155270560 + 150054755 150054984 Tigger3a 397 + 33 265 168767 37 63 61 28 16 26 38 1 0 24 9 5 13 chain 4692 chrX 155270560 + 150058289 150058343 MER41A 554 + 405 459 198616 54 chain 22648 chrX 155270560 + 150060403 150060706 AluSp 311 + 1 289 117331 19 12 4 108 2 0 150 5 0 7 chain 3532 chrX 155270560 + 150085128 150085314 MIR 256 + 14 231 214835 22 130 161 34 chain 5520 chrX 155270560 + 150097935 150098006 MLT1D 503 - 0 71 189840 71 chain 22660 chrX 155270560 + 150127196 150127464 AluSz 310 + 9 277 117273 268 chain 24696 chrX 155270560 + 150185561 150185845 AluSp 311 + 3 287 106456 284 chain 10105 chrX 155270560 + 150190958 150191183 Tigger3a 397 + 139 364 160073 114 1 31 11 31 1 11 1 0 4 32 33 20 chain 117131 chrX 155270560 + 150208557 150210042 L1P2 5180 - 3686 5178 32080 213 5 6 393 0 1 14 0 11 63 1 0 6 1 0 272 1 0 8 1 0 260 1 0 92 6 5 148 chain 27192 chrX 155270560 + 150210682 150210989 AluYf4 310 + 0 307 95619 307 chain 21105 chrX 155270560 + 150213246 150213598 MSTA 426 + 28 426 123538 80 20 48 48 38 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155270560 + 150273408 150273614 MER20 218 + 22 217 163490 10 7 0 35 58 54 36 1 0 6 0 1 53 chain 5627 chrX 155270560 + 150274555 150274661 L1PB3 3668 - 87 186 188798 12 12 8 32 3 1 25 1 0 21 chain 329422 chrX 155270560 + 150289455 150293255 L1PA6 6164 + 2347 6162 12223 764 0 2 187 0 1 267 0 1 133 1 2 945 1 0 269 4 10 115 0 1 269 1 5 844 chain 8008 chrX 155270560 + 150293696 150293840 L1PA15 4387 + 4121 4260 171003 9 1 0 50 4 5 19 4 0 13 6 5 38 chain 43020 chrX 155270560 + 150293846 150294410 L1PA8 5853 + 5294 5853 65397 4 0 1 265 1 0 45 2 0 55 16 15 61 2 1 19 2 1 92 chain 2711 chrX 155270560 + 150294457 150294489 L1PA8 5853 + 5532 5564 230055 32 chain 3830 chrX 155270560 + 150294490 150294534 L1PA8 5853 + 5564 5608 209933 44 chain 7888 chrX 155270560 + 150294536 150294658 L1PA8 5853 + 5608 5740 171743 70 12 10 19 0 12 21 chain 5904 chrX 155270560 + 150294660 150294773 L1PA8 5853 + 5741 5853 186148 19 1 0 29 21 0 8 2 23 33 chain 3271 chrX 155270560 + 150307669 150307705 Tigger1 2417 + 555 591 219591 36 chain 227263 chrX 155270560 + 150309058 150312052 L1PA6 6164 - 2 2689 17470 6 2 0 145 0 1 459 0 2 234 1 0 265 317 0 403 1 0 4 0 1 179 0 3 94 0 4 15 2 1 42 1 3 63 1 3 760 chain 19944 chrX 155270560 + 150361788 150362086 L1M1 2793 + 1510 1801 127320 48 36 25 146 0 4 68 chain 34044 chrX 155270560 + 150364962 150365571 L1MA3 4352 - 0 579 77557 22 6 2 12 1 0 28 1 0 5 2 1 23 2 0 29 7 3 44 108 90 188 0 1 131 chain 502096 chrX 155270560 + 150368301 150374465 L1PA5 6144 + 0 6144 6722 113 7 21 75 2 1 197 0 11 7 12 1 69 33 34 172 4 3 248 25 0 154 0 8 51 13 4 19 12 13 1103 12 0 272 0 1 7 1 0 472 1 0 114 1 0 772 0 1 684 5 6 48 0 1 336 1 0 273 0 4 849 chain 455447 chrX 155270560 + 150421516 150427476 L1PA8 5853 + 50 5853 8562 22 2 0 10 1 0 13 49 13 121 1 0 4 0 1 68 18 6 146 8 9 127 0 1 4 1 0 41 0 3 96 4 3 141 0 3 400 13 16 234 0 34 81 0 1 370 17 0 61 3 0 14 13 5 383 0 4 434 6 3 33 0 4 37 0 1 224 0 1 171 0 1 1106 98 0 192 0 5 186 1 0 28 1 0 15 1 0 6 11 12 56 6 9 362 31 1 148 0 1 43 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1430 171406 102 chain 9161 chrX 155270560 + 150559506 150559630 MER67C 710 + 579 706 164761 42 1 4 81 chain 23399 chrX 155270560 + 150607024 150607307 AluSp 311 - 17 300 113651 283 chain 26503 chrX 155270560 + 150609437 150609804 THE1B 368 + 0 368 98030 63 11 15 72 9 7 16 2 1 194 chain 29724 chrX 155270560 + 150610458 150611142 MLT2A1 477 + 8 385 85748 125 0 1 35 4 1 9 0 1 25 0 1 57 1 0 14 306 0 108 chain 28070 chrX 155270560 + 150610733 150611033 AluYa5 310 - 10 310 92753 300 chain 50584 chrX 155270560 + 150611705 150612362 THE1-int 844 + 13 665 58596 7 1 0 21 2 1 13 1 0 51 1 0 19 1 0 540 chain 245977 chrX 155270560 + 150617420 150621746 L1PB1 5432 - 12 3305 16453 16 1 0 13 1 0 21 1 0 24 24 19 19 20 8 4 1 0 15 1 0 43 2 1 16 2 1 53 31 24 9 1 0 20 1 0 9 973 1 477 3 0 283 0 7 150 5 6 158 1 2 23 3 4 260 65 26 220 1 5 176 18 1 470 4 0 340 2 0 55 0 3 89 10 29 20 11 12 161 chain 10612 chrX 155270560 + 150626110 150626332 L1PB1 5432 - 10 210 157766 18 1 0 13 2 1 20 1 0 24 2 0 14 1 0 5 3 1 14 28 16 16 1 0 42 2 1 15 chain 13819 chrX 155270560 + 150626362 150626561 L1PB1 5432 + 4946 5142 145182 157 13 11 24 1 0 4 chain 58669 chrX 155270560 + 150655818 150656471 L1PA5 6144 - 1 654 53599 653 chain 4464 chrX 155270560 + 150658671 150658729 MER2 342 + 152 211 201176 12 0 1 46 chain 13309 chrX 155270560 + 150658729 150658918 MER30 238 - 0 205 147051 111 4 0 8 5 25 61 chain 24041 chrX 155270560 + 150673392 150673673 L1PA6 6164 - 2 283 110111 281 chain 29246 chrX 155270560 + 150675590 150675966 MLT2A1 477 - 93 472 87821 164 2 0 46 1 5 26 1 2 136 chain 3614 chrX 155270560 + 150698994 150699035 L1MB7 1623 - 197 238 213427 41 chain 24442 chrX 155270560 + 150704458 150704733 L1PA3long 6157 + 5881 6156 107853 275 chain 211022 chrX 155270560 + 150715334 150718272 L1PA10 4194 + 252 3126 18429 19 3 1 14 1 0 8 39 32 10 12 10 7 1 0 10 5 4 7 5 0 6 1 0 15 7 0 12 4 0 65 44 42 6 0 3 253 34 6 140 12 0 531 4 5 308 0 1 165 2 1 289 0 4 403 0 1 496 chain 6339 chrX 155270560 + 150718291 150718371 L1PA8 5853 + 5608 5687 182466 74 1 0 5 chain 13628 chrX 155270560 + 150718373 150718540 L1PA8 5853 + 5688 5853 145864 52 2 1 19 1 0 93 chain 117568 chrX 155270560 + 150718826 150720228 LTR12C 1709 - 0 1709 31938 168 0 102 211 0 4 40 0 166 141 0 40 363 10 9 356 9 5 104 chain 42829 chrX 155270560 + 150722897 150723479 LTR12C 1709 - 0 682 65616 101 17 0 44 0 101 235 44 13 82 0 47 59 chain 22734 chrX 155270560 + 150723479 150723754 LTR12C 1709 - 960 1235 99512 275 chain 9101 chrX 155270560 + 150723767 150723886 LTR12C 1709 - 1245 1407 165067 80 4 47 35 chain 23412 chrX 155270560 + 150723896 150724187 LTR12C 1709 - 1418 1709 113587 291 chain 416876 chrX 155270560 + 150725318 150730131 HERV9-int 5642 - 830 5642 9605 1259 0 3 1515 0 4 331 0 1 4 1 0 79 1 0 505 3 4 197 4 0 115 1 0 161 5 0 101 0 2 531 chain 98467 chrX 155270560 + 150730230 150731816 LTR12C 1709 - 0 1709 37170 82 1 0 151 1 4 244 11 4 52 0 125 82 0 2 126 1 0 5 0 119 98 4 5 94 27 28 17 165 1 6 0 1 63 19 62 71 1 2 181 61 61 23 chain 3939 chrX 155270560 + 150735575 150735637 Tigger4a 237 - 176 231 208292 40 0 1 4 8 0 10 chain 49216 chrX 155270560 + 150761723 150762312 L1PA6 6164 - 3 593 59578 144 0 7 7 6 0 432 chain 129311 chrX 155270560 + 150767302 150768775 SVA_B 1603 - 9 1602 28240 578 0 124 28 1 0 12 1 0 810 14 0 20 0 12 9 chain 167701 chrX 155270560 + 150780300 150782191 L1PA4 6152 - 9 1901 22315 389 0 1 14 1 2 1383 1 0 103 chain 167866 chrX 155270560 + 150795692 150797570 L1PA4 6152 - 14 1908 22295 319 0 1 993 0 15 566 chain 23326 chrX 155270560 + 150806635 150806919 L1PA6 6164 + 5873 6162 114053 70 0 1 206 0 4 8 chain 2878 chrX 155270560 + 150817928 150817970 MIRc 230 + 104 140 227398 30 6 0 6 chain 263500 chrX 155270560 + 150823336 150826317 L1PA5 6144 - 9 2986 15508 1551 3 0 404 0 1 504 1 0 505 1 0 12 chain 175405 chrX 155270560 + 150834862 150836902 L1PA4 6152 - 0 2426 21409 6 0 5 843 0 4 257 8 9 500 4 380 422 chain 43568 chrX 155270560 + 150836902 150837383 L1PA4 6152 + 3210 3691 63710 481 chain 29239 chrX 155270560 + 150927087 150927398 AluYa5 310 + 0 310 87850 132 1 0 178 chain 126177 chrX 155270560 + 150937359 150939127 L1PA11 4918 + 2800 4578 29046 117 0 1 66 0 1 167 0 1 55 0 1 4 1 0 229 7 15 109 0 1 46 1 13 40 1 0 30 0 1 64 0 1 57 0 2 5 2 0 38 2 0 5 8 10 431 0 4 17 4 5 57 2 1 54 0 1 4 1 0 19 2 0 16 1 0 20 21 12 10 13 9 15 1 0 13 2 0 11 chain 9352 chrX 155270560 + 150947677 150947837 MLT1A 405 - 247 401 163796 34 1 0 68 1 0 4 4 5 19 8 0 9 2 5 10 chain 3300 chrX 155270560 + 150957167 150957206 MER3 215 + 35 74 218971 39 chain 15503 chrX 155270560 + 151044938 151045139 MER4A1 472 + 0 203 139886 15 0 2 4 0 1 11 1 0 170 chain 99399 chrX 155270560 + 151050339 151051510 L1PA6 6164 + 4985 6160 36923 333 0 4 668 28 30 134 2 0 6 chain 156833 chrX 155270560 + 151053103 151055138 MER4-int 2692 + 542 2586 23750 13 1 20 148 5 3 68 11 1 96 6 0 19 1 0 9 0 2 477 11 20 53 0 1 32 9 4 274 1 0 488 0 1 15 0 1 195 0 1 103 chain 13503 chrX 155270560 + 151161872 151162057 MER30 238 - 0 202 146354 48 3 0 56 9 29 69 chain 25119 chrX 155270560 + 151165666 151165955 AluSp 311 - 14 303 104176 289 chain 84566 chrX 155270560 + 151170775 151171847 MER11B 1079 + 1 1063 41695 263 3 0 299 33 32 84 3 2 58 1 2 31 8 2 289 chain 15463 chrX 155270560 + 151172249 151172422 L1PA3long 6157 - 1 174 140009 173 chain 4082 chrX 155270560 + 151181771 151181879 Tigger4a 237 + 3 130 206176 32 42 61 34 chain 35470 chrX 155270560 + 151199740 151200177 MER4A1 472 - 11 472 75594 209 6 27 181 0 1 9 1 0 12 0 1 4 0 2 15 chain 128684 chrX 155270560 + 151200186 151201955 MER4-int 2692 - 1 1792 28394 47 4 0 358 25 26 70 19 35 154 6 1 17 0 1 202 1 0 13 1 0 12 1 3 168 0 4 62 19 14 21 1 6 12 6 13 19 2 1 4 0 1 110 0 1 397 0 1 18 chain 232553 chrX 155270560 + 151201968 151204539 L1PA3long 6157 - 0 2576 17168 258 0 1 610 0 4 1703 chain 30352 chrX 155270560 + 151208861 151209290 MER4A1 472 - 10 472 83773 58 11 9 142 6 27 162 0 12 21 1 0 9 4 7 15 chain 37549 chrX 155270560 + 151212091 151212536 L1PA7 6471 - 6 447 72757 6 3 0 322 1 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320 0 30 7 0 119 13 1 61 chain 80326 chrX 155270560 + 151298090 151299055 LTR5_Hs 974 + 0 974 43463 288 0 1 438 0 3 90 7 14 37 2 0 103 chain 29359 chrX 155270560 + 151320273 151320581 AluYa5 310 - 2 310 87245 308 chain 120418 chrX 155270560 + 151342263 151343581 L1PA4 6152 - 0 1318 30897 1318 chain 30751 chrX 155270560 + 151349959 151350303 L1PA3long 6157 + 5813 6157 82954 344 chain 23476 chrX 155270560 + 151367560 151367865 AluY 311 + 8 309 113232 11 5 1 110 1 2 134 0 1 36 2 0 6 chain 104211 chrX 155270560 + 151394864 151396013 L1PA3long 6157 + 5006 6156 35686 520 0 1 629 chain 19013 chrX 155270560 + 151401838 151402048 L1PA3long 6157 + 5316 5526 130081 210 chain 56367 chrX 155270560 + 151402048 151402678 L1PA3long 6157 + 5527 6157 54924 630 chain 554351 chrX 155270560 + 151404469 151410500 L1PA2 6032 - 4 6029 904 1648 0 4 3419 3 0 244 7 0 710 chain 5368 chrX 155270560 + 151416909 151416970 L1PA4 6152 + 6090 6151 191333 61 chain 25464 chrX 155270560 + 151431333 151431696 THE1C 375 - 0 375 102386 25 1 0 21 30 32 130 0 11 156 chain 7186 chrX 155270560 + 151439340 151439433 THE1C-int 1605 + 114 207 176173 93 chain 183182 chrX 155270560 + 151446603 151448658 L1PA4 6152 - 21 2076 20659 2055 chain 511603 chrX 155270560 + 151457992 151464302 L1PA6 6164 - 3 6164 6015 7 2 0 325 1 0 232 0 13 8 13 1 77 0 4 510 4 3 4 0 1 333 1 0 274 0 4 583 5 1 78 1 0 104 5 6 30 0 1 39 2 1 174 30 0 157 7 6 164 2 0 680 1 0 12 4 0 179 55 0 8 13 0 183 2 1 235 0 1 822 48 3 160 1 0 144 1 3 125 6 5 452 0 1 7 chain 63450 chrX 155270560 + 151466701 151467399 L1PA5 6144 - 3 701 51264 698 chain 57260 chrX 155270560 + 151471721 151472448 L1PA8 5853 + 5130 5853 54362 272 1 2 88 0 1 73 1 0 44 2 0 66 4 3 9 1 0 11 8 9 32 2 1 19 1 0 93 chain 327401 chrX 155270560 + 151484663 151489179 L1PB1 5432 + 637 5418 12297 760 0 6 9 1 2 105 1 3 64 3 42 52 0 1 231 1 3 500 6 9 50 2 5 19 5 0 4 0 1 317 2 0 13 1 0 8 8 0 400 23 0 49 5 16 160 14 18 52 27 286 543 26 27 60 1 0 27 25 28 50 1 0 46 6 7 4 0 1 13 3 0 77 0 2 42 0 1 4 1 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0 385 84200 140 1 2 27 0 4 150 1 0 62 chain 49960 chrX 155270560 + 151603625 151604228 L1PA7 6471 + 5868 6466 59052 518 2 3 66 6 0 11 chain 93097 chrX 155270560 + 151608368 151609494 L1PA7 6471 + 5333 6470 38631 281 0 3 228 0 1 176 12 18 398 6 7 25 chain 89091 chrX 155270560 + 151623709 151625000 L1MA2 4263 + 1982 4105 39970 211 1 0 4 0 1 36 4 6 253 1 4 31 0 848 208 6 2 14 9 7 55 14 13 117 17 14 74 2 0 5 2 0 173 15 8 39 chain 3634 chrX 155270560 + 151627015 151627086 L1MB3 1562 + 1482 1552 213066 23 19 18 29 chain 9870 chrX 155270560 + 151627819 151627930 THE1A 353 - 0 111 161236 111 chain 23446 chrX 155270560 + 151630632 151630926 L1PA7 6471 - 6 294 113399 8 6 0 148 7 8 5 1 0 119 chain 7728 chrX 155270560 + 151632332 151632415 L1PA7 6471 + 5898 5981 172727 83 chain 42171 chrX 155270560 + 151632415 151632901 L1PA7 6471 + 5982 6467 66436 389 1 0 96 chain 354766 chrX 155270560 + 151639620 151644539 L1PB1 5432 + 587 5420 11482 14 2 1 10 0 1 358 2 1 5 0 1 241 0 1 5 4 5 154 0 3 8 1 0 7 8 1 10 0 1 130 0 4 152 1 9 102 1 0 35 0 4 150 0 3 424 0 1 63 13 0 104 0 1 240 1 0 6 2 0 44 0 3 75 0 1 356 10 11 235 14 6 150 47 12 213 9 8 205 1 0 9 0 1 446 39 12 471 18 16 22 1 0 9 10 11 9 2 0 53 2 1 16 1 0 44 2 1 14 1 0 4 45 32 14 2 0 16 9 0 7 3 11 12 0 3 8 2 1 16 chain 83497 chrX 155270560 + 151658421 151659350 L1PA4 6152 + 5215 6143 42119 80 1 0 848 chain 33953 chrX 155270560 + 151659504 151659919 THE1C-int 1605 + 0 415 77690 415 chain 101634 chrX 155270560 + 151659954 151661394 L1PB1 5432 - 5 1402 36360 13 5 3 7 1 0 13 1 0 21 1 0 24 2 0 15 50 35 13 7 6 40 1 0 16 2 1 53 2 0 8 5 1 9 5 4 7 1 0 24 1 0 11 5 0 297 7 1 183 0 1 414 1 0 36 0 1 9 1 0 40 0 2 89 chain 54632 chrX 155270560 + 151661397 151662100 L1PB1 5432 + 3316 4017 55949 230 0 3 48 0 1 216 19 12 133 7 8 50 chain 15989 chrX 155270560 + 151664292 151664585 THE1B 368 - 61 368 138385 58 11 10 7 1 0 17 0 1 5 1 0 4 0 7 29 1 0 52 6 8 23 31 39 47 chain 28793 chrX 155270560 + 151670077 151670394 L1PA5 6144 - 1149 1466 89931 317 chain 26174 chrX 155270560 + 151670394 151670730 L1PA5 6144 + 4994 5294 99304 65 36 0 235 chain 75953 chrX 155270560 + 151670730 151671570 L1PA5 6144 + 5295 6135 45510 840 chain 30156 chrX 155270560 + 151684225 151684570 L1PA7 6471 + 6124 6470 84316 191 0 1 154 chain 23745 chrX 155270560 + 151687732 151688027 AluSg7 307 + 9 305 111809 122 1 2 172 chain 59596 chrX 155270560 + 151691031 151691764 L1PA8A 6298 + 5559 6291 53053 20 0 1 596 1 0 16 1 0 99 chain 25401 chrX 155270560 + 151694024 151694304 L1PA3long 6157 - 0 287 102681 148 0 7 132 chain 125271 chrX 155270560 + 151698720 151700332 THE1D-int 1627 - 5 1627 29306 45 1 0 208 0 1 35 14 21 169 19 18 154 0 3 362 0 3 331 3 2 233 1 0 37 chain 552109 chrX 155270560 + 151712997 151719022 L1PA2 6032 + 7 6032 1179 250 1 0 4202 0 1 1572 chain 25678 chrX 155270560 + 151730372 151730672 L1PA7 6471 + 6172 6466 101376 282 6 0 12 chain 7773 chrX 155270560 + 151746393 151746502 L1MB3 1562 - 8 119 172461 31 1 0 40 0 6 12 3 0 22 chain 543309 chrX 155270560 + 151750386 151756524 L1PA4 6152 + 1 6151 2294 126 0 14 589 1 2 1298 1 0 1128 0 1 667 3 1 1474 3 0 700 0 1 144 0 1 4 chain 6334 chrX 155270560 + 151757820 151757890 L1PA2 6032 + 5954 6024 182510 70 chain 520048 chrX 155270560 + 151774303 151781205 L1PA6 6164 - 3 6162 5156 62 2 0 81 1 0 14 1 3 547 14 0 85 0 5 34 7 12 324 1 0 350 0 1 38 0 1 748 726 0 153 2 0 180 1 0 331 0 2 188 0 2 227 10 13 419 38 7 52 0 1 65 0 4 292 0 7 1346 1 0 48 0 2 278 0 2 211 1 0 24 chain 63121 chrX 155270560 + 151776625 151777338 L1PA4 6152 - 9 722 51287 713 chain 28853 chrX 155270560 + 151800359 151800707 THE1C 375 - 31 375 89657 36 4 0 308 chain 26128 chrX 155270560 + 151840475 151840756 L1PA2 6032 + 5750 6031 99487 281 chain 360431 chrX 155270560 + 151842949 151847042 L1PA5 6144 - 4 4098 11352 1476 6 7 1377 0 1 439 6 5 789 chain 96746 chrX 155270560 + 151852917 151854866 MER41-int 2638 + 1363 2636 37636 307 1 0 151 10 9 4 0 1 41 2 0 11 695 26 119 4 0 273 1 0 147 0 1 183 chain 38652 chrX 155270560 + 151854875 151855735 MER41B 635 + 0 554 71222 117 9 10 128 0 12 190 353 34 63 chain 6160 chrX 155270560 + 151857540 151857647 MLT1A 405 + 36 144 183889 33 1 3 40 14 13 19 chain 9855 chrX 155270560 + 151860970 151861090 THE1B-int 1605 + 1485 1605 161319 120 chain 24951 chrX 155270560 + 151861090 151861437 THE1B 368 + 0 346 105052 13 2 0 24 0 5 130 5 4 16 4 0 143 0 1 10 chain 4273 chrX 155270560 + 151864326 151864376 L1MC3 1789 + 485 535 203569 50 chain 4273 chrX 155270560 + 151880002 151880052 L1MC3 1789 + 485 535 203568 50 chain 29369 chrX 155270560 + 151887663 151887975 AluYa5 310 - 0 310 87206 184 2 0 126 chain 4182 chrX 155270560 + 151906201 151906250 L1MC3 1789 - 1255 1304 204794 49 chain 29155 chrX 155270560 + 151917507 151917819 AluYa5 310 + 0 310 88283 132 2 0 178 chain 4273 chrX 155270560 + 151925430 151925480 L1MC3 1789 - 1254 1304 203571 50 chain 4273 chrX 155270560 + 151941091 151941141 L1MC3 1789 - 1254 1304 203570 50 chain 24951 chrX 155270560 + 151944026 151944373 THE1B 368 - 22 368 105054 10 0 1 135 4 0 24 5 4 127 0 5 27 2 0 13 chain 9855 chrX 155270560 + 151944373 151944493 THE1B-int 1605 - 0 120 161320 120 chain 38653 chrX 155270560 + 151949728 151950587 MER41B 635 - 81 635 71221 63 352 34 194 0 12 124 9 10 117 chain 97054 chrX 155270560 + 151950596 151952562 MER41-int 2638 - 2 1275 37549 182 1 2 147 1 0 273 4 0 119 699 13 24 2 0 41 0 1 4 10 9 151 1 0 307 chain 30389 chrX 155270560 + 151963282 151963670 MSTA 426 + 16 408 83701 189 2 0 9 3 5 55 0 4 130 chain 532685 chrX 155270560 + 152003846 152009984 L1PA6 6164 - 2 6164 3888 6 5 0 153 0 3 339 2 0 1375 0 8 1087 2 1 381 0 1 474 0 1 887 1 0 127 1 0 351 0 1 143 0 17 106 0 1 38 0 1 249 1 2 410 chain 3369 chrX 155270560 + 152011345 152011415 L1MB3 1562 - 720 785 217693 24 20 15 26 chain 16403 chrX 155270560 + 152056614 152056819 MER47A 366 + 97 302 137200 205 chain 16303 chrX 155270560 + 152123793 152124158 MER57-int 2662 - 0 330 137475 7 2 0 30 2 0 5 37 31 7 1 0 23 3 0 11 1 0 5 1 0 25 2 0 12 14 2 68 22 16 10 0 1 77 chain 84588 chrX 155270560 + 152144846 152146046 MER11A 1151 - 0 1151 41684 75 0 4 150 0 9 54 6 40 72 0 4 53 1 0 5 1 3 114 2 0 83 7 5 187 0 2 11 17 12 40 1 0 29 2 0 21 8 0 24 88 0 6 0 5 143 chain 25425 chrX 155270560 + 152146917 152147299 THE1D 372 - 0 372 102574 99 0 1 79 11 13 11 0 1 23 0 1 6 1 5 57 23 4 72 chain 4116 chrX 155270560 + 152150465 152150514 MER92B 628 - 434 483 205700 49 chain 52612 chrX 155270560 + 152151577 152152239 PABL_A 660 - 0 660 57231 215 2 0 162 6 7 8 1 0 268 chain 8305 chrX 155270560 + 152164732 152164828 MSTD 398 - 300 398 169366 35 0 2 61 chain 9767 chrX 155270560 + 152164858 152165047 MER92B 628 + 0 188 161759 59 10 11 35 7 8 21 16 14 26 1 0 14 chain 21456 chrX 155270560 + 152170778 152171095 THE1B 368 + 0 368 122308 13 2 0 24 0 5 65 1 71 14 4 0 16 19 1 159 chain 35157 chrX 155270560 + 152176300 152176766 LTR19A 502 - 0 502 75977 42 0 1 146 1 2 72 3 0 18 1 38 35 0 1 82 1 0 65 chain 12970 chrX 155270560 + 152178121 152178316 MSTA 426 + 0 198 148351 124 7 6 27 11 15 26 chain 39184 chrX 155270560 + 152178750 152179215 MER41A 554 - 88 554 70482 370 1 2 94 chain 149742 chrX 155270560 + 152179224 152181966 MER41-int 2638 - 2 2273 24657 109 0 1 234 2 0 242 15 17 114 0 14 29 2 0 19 304 0 189 1 0 94 0 125 69 0 5 51 5 7 84 0 2 17 0 1 39 1 0 45 1 0 53 0 2 41 1 0 90 0 1 118 370 34 60 8 10 24 7 16 85 0 4 126 5 12 88 chain 283189 chrX 155270560 + 152184107 152187272 L1PA5 6144 + 2950 6128 14455 106 1 0 1564 0 1 5 1 0 395 0 2 270 0 5 588 1 7 4 0 1 230 chain 18635 chrX 155270560 + 152194828 152195045 AluSc8 310 + 59 279 131117 73 0 3 144 chain 10837 chrX 155270560 + 152215894 152216021 MER85 139 - 0 137 156837 40 0 10 87 chain 73943 chrX 155270560 + 152217569 152218556 THE1C-int 1605 + 604 1591 46546 110 3 0 27 5 14 102 0 2 4 1 0 147 5 0 90 18 17 201 1 0 273 chain 30022 chrX 155270560 + 152232763 152233165 MLT2A1 477 + 0 407 84737 15 0 4 148 7 4 8 0 1 24 0 1 96 1 5 18 1 0 69 1 0 14 chain 88003 chrX 155270560 + 152266368 152267476 MER11A 1151 + 0 1136 40370 104 4 6 66 8 0 23 2 0 95 4 0 379 6 9 126 0 1 10 6 40 56 0 1 49 2 3 168 chain 30022 chrX 155270560 + 152330226 152330628 MLT2A1 477 + 0 407 84736 15 0 4 148 7 4 8 0 1 24 0 1 96 1 5 18 1 0 69 1 0 14 chain 4356 chrX 155270560 + 152347646 152347700 MLT1A1 405 - 18 72 202492 54 chain 49856 chrX 155270560 + 152370512 152371145 THE1B-int 1605 + 0 659 59116 305 6 7 120 10 35 192 chain 88003 chrX 155270560 + 152452741 152453849 MER11A 1151 + 0 1136 40369 104 4 6 66 8 0 23 2 0 95 4 0 379 6 9 126 0 1 10 6 40 56 0 1 49 2 3 168 chain 16039 chrX 155270560 + 152496147 152496523 THE1D 372 - 0 370 138253 22 8 6 60 1 0 38 76 80 25 0 1 59 52 44 35 chain 104029 chrX 155270560 + 152496804 152497942 L1PA3long 6157 - 7 1144 35727 389 1 0 748 chain 88049 chrX 155270560 + 152498868 152499925 MER11C 1089 - 38 1089 40353 53 0 1 122 0 2 98 9 1 195 17 16 563 chain 22330 chrX 155270560 + 152510306 152510555 L1PA4 6152 - 13 261 118776 11 1 0 237 chain 4166 chrX 155270560 + 152510555 152510599 L1PA4 6152 + 5852 5896 205012 44 chain 140768 chrX 155270560 + 152590968 152592967 L1PA14 3548 - 83 2070 26026 9 6 0 42 1 0 6 40 36 28 7 3 9 1 0 6 1 0 105 1 0 84 1 0 6 2 0 11 16 12 103 2 0 7 7 5 29 15 13 12 3 1 17 1 4 380 1 0 188 2 0 45 1 16 742 1 0 5 6 9 13 0 4 37 chain 52103 chrX 155270560 + 152597587 152598319 L1PA16 3655 + 2791 3569 57562 36 6 20 22 0 37 10 2 1 74 1 0 5 1 2 204 1 0 87 14 12 115 1 0 153 chain 18915 chrX 155270560 + 152621928 152622276 THE1B 368 + 0 367 130326 44 46 56 64 1 0 34 46 56 113 chain 49563 chrX 155270560 + 152622328 152622920 LTR66 600 + 0 600 59348 149 1 8 256 0 4 62 3 0 121 chain 60112 chrX 155270560 + 152624022 152624739 THE1B-int 1605 + 875 1593 52765 99 0 1 618 chain 3698 chrX 155270560 + 152642245 152642290 L1MA1 4479 + 4057 4101 211957 21 1 0 23 chain 53348 chrX 155270560 + 152713397 152714006 L1PA5 6144 + 5530 6138 56807 266 6 5 337 chain 3271 chrX 155270560 + 152716635 152716671 U2 167 - 119 155 219554 36 chain 7720 chrX 155270560 + 152727412 152727513 MER4D1 891 + 727 828 172796 30 0 1 64 1 0 6 chain 5865 chrX 155270560 + 152848636 152848707 AluJb 308 + 5 76 186541 71 chain 22672 chrX 155270560 + 152849718 152849981 AluSz 310 + 0 268 117204 56 0 1 52 0 4 155 chain 2888 chrX 155270560 + 152874735 152874769 MLT1E2 623 - 206 241 227241 11 0 1 23 chain 18970 chrX 155270560 + 152931703 152931990 7SLRNA 320 + 20 316 130184 25 10 17 72 1 9 99 11 6 50 1 0 18 chain 34313 chrX 155270560 + 152941470 152941950 LTR10E 629 + 0 475 77186 61 0 1 96 19 16 118 8 7 23 5 4 53 1 0 96 chain 30464 chrX 155270560 + 152947977 152948435 LTR7B 505 + 0 496 83503 108 0 10 53 43 24 5 1 0 15 0 26 8 1 23 6 0 2 82 1 0 77 16 15 42 chain 25200 chrX 155270560 + 152995766 152996075 AluYk4 311 + 1 310 103744 309 chain 9920 chrX 155270560 + 153020083 153020208 L1MA9 1812 + 22 141 160973 9 4 0 38 2 0 72 chain 24371 chrX 155270560 + 153021066 153021355 AluYc3 301 - 6 301 108253 37 0 4 139 1 2 38 0 1 74 chain 10531 chrX 155270560 + 153110989 153111152 MER67C 710 + 547 710 158130 20 15 14 47 1 2 80 chain 42693 chrX 155270560 + 153205942 153206797 MER41A 554 + 0 554 65782 242 4 23 115 316 0 141 4 0 33 chain 24433 chrX 155270560 + 153260693 153260983 AluY 311 + 5 296 107895 125 1 2 164 chain 29507 chrX 155270560 + 153261593 153261999 MER4A1 472 + 17 472 86613 218 19 43 101 1 26 67 chain 23836 chrX 155270560 + 153342777 153343236 L1PB1 5432 + 5002 5427 111274 79 24 27 8 5 0 22 1 0 7 2 1 12 5 1 9 6 4 47 3 2 15 1 0 44 1 0 16 23 12 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 1 0 5 chain 29495 chrX 155270560 + 153343760 153344069 AluYb8 318 + 0 309 86651 309 chain 24283 chrX 155270560 + 153372420 153372715 AluY 311 + 11 307 108747 112 1 0 6 3 4 45 0 1 128 chain 15550 chrX 155270560 + 153373738 153373930 MSTA 426 - 234 426 139731 192 chain 3621 chrX 155270560 + 153389744 153389791 Arthur1B 1073 + 977 1023 213331 14 1 0 32 chain 8095 chrX 155270560 + 153415476 153415599 MLT1A0 366 - 214 327 170520 42 12 3 10 1 0 58 chain 22386 chrX 155270560 + 153430806 153431089 AluSg 306 + 16 294 118556 106 1 0 124 4 0 48 chain 4546 chrX 155270560 + 153432313 153432404 MER20 218 + 3 78 200262 23 4 1 7 11 0 24 2 0 20 chain 25477 chrX 155270560 + 153433517 153433812 AluSp 311 - 15 311 102326 31 0 2 159 1 0 104 chain 8095 chrX 155270560 + 153452607 153452730 MLT1A0 366 - 214 327 170519 42 12 3 10 1 0 58 chain 22386 chrX 155270560 + 153467937 153468220 AluSg 306 + 16 294 118555 106 1 0 124 4 0 48 chain 4546 chrX 155270560 + 153469442 153469533 MER20 218 + 3 78 200261 23 4 1 7 11 0 24 2 0 20 chain 25477 chrX 155270560 + 153470646 153470941 AluSp 311 - 15 311 102325 31 0 2 159 1 0 104 chain 8095 chrX 155270560 + 153489725 153489848 MLT1A0 366 - 214 327 170518 42 12 3 10 1 0 58 chain 25269 chrX 155270560 + 153505079 153505355 AluY 311 + 20 298 103371 111 0 2 165 chain 4546 chrX 155270560 + 153507250 153507341 MER20 218 + 3 78 200260 23 4 1 7 11 0 24 2 0 20 chain 25477 chrX 155270560 + 153508454 153508749 AluSp 311 - 15 311 102324 31 0 2 159 1 0 104 chain 33189 chrX 155270560 + 153528169 153529436 L1PB2 3958 - 125 1724 78913 58 1 0 11 1 0 15 9 7 49 357 1007 90 7 13 89 7 4 8 4 0 6 7 0 32 4 8 21 0 5 40 0 2 45 316 0 13 32 31 45 chain 22738 chrX 155270560 + 153591804 153592083 AluY 311 + 4 285 116877 128 0 1 11 0 1 140 chain 17374 chrX 155270560 + 153721756 153722022 AluJb 308 + 10 275 134584 164 42 41 60 chain 11402 chrX 155270560 + 153726569 153726721 AluSc8 310 + 37 175 154688 97 16 2 39 chain 5827 chrX 155270560 + 153730556 153730686 MER65A 464 - 240 462 186890 24 0 3 8 32 103 15 1 19 50 chain 84911 chrX 155270560 + 153749371 153750391 LTR5A 1029 + 0 1029 41547 13 0 4 117 0 13 20 15 1 42 2 0 555 9 11 98 1 7 148 chain 25250 chrX 155270560 + 153750939 153751335 MER75 514 + 11 469 103476 16 4 6 44 15 18 101 2 1 41 12 52 34 0 18 127 chain 6397 chrX 155270560 + 153753123 153753226 MER2 342 + 210 320 182044 31 4 10 38 8 9 22 chain 24214 chrX 155270560 + 153810360 153810673 MSTA-int 1630 + 1312 1625 109128 203 1 0 35 0 1 74 chain 23288 chrX 155270560 + 153810678 153811048 MSTA 426 + 0 414 114264 108 34 62 36 7 5 25 2 0 60 1 21 97 chain 81097 chrX 155270560 + 153816921 153817902 LTR5B 1012 + 0 1003 43143 36 1 0 87 0 14 313 0 14 25 1 0 126 3 0 378 1 0 10 chain 91655 chrX 155270560 + 153817915 153819590 HERVK-int 6823 + 5 3826 39067 13 1 0 24 11 9 23 1 0 26 1 0 21 1 0 12 2 0 165 1 0 8 0 1 31 1 0 4 13 14 99 1 0 143 323 2497 162 16 0 359 29 25 27 4 5 153 chain 19928 chrX 155270560 + 153825447 153825760 THE1B 368 + 0 310 127365 65 10 5 99 1 0 21 7 10 14 0 4 6 7 6 12 1 0 62 2 0 6 chain 80682 chrX 155270560 + 153836675 153837658 LTR5B 1012 - 0 1002 43312 8 0 2 71 0 6 32 0 1 74 0 1 202 3 0 126 1 0 352 0 14 87 1 0 26 chain 285465 chrX 155270560 + 153838428 153843024 HERVK-int 6823 - 226 6818 14322 11 9 4 7 5 0 9 1 0 4 2 1 15 34 25 13 1 0 7 2 1 25 4 2 8 1 0 8 4 0 4 2 0 10 12 8 8 1 0 3 1 0 8 10 5 27 2 0 11 4 2 11 1 0 15 2 0 9 201 117 19 1 0 11 17 11 21 1 0 9 4 2 73 5 3 8 1 0 5 3 0 44 10 9 120 2 1 35 1 0 100 1 0 23 1 0 198 5 4 9 1 0 107 1 0 236 12 12 23 0 9 244 1 0 1210 4 5 27 29 25 353 16 0 168 323 2497 143 1 0 99 13 14 4 1 0 31 0 1 8 1 0 165 2 0 12 1 0 21 1 0 26 1 0 23 11 9 24 1 0 13 chain 79313 chrX 155270560 + 153843037 153844018 LTR5B 1012 - 9 1012 43903 10 1 0 381 3 0 123 1 0 25 0 14 169 0 7 8 8 1 128 0 14 88 1 0 35 chain 23288 chrX 155270560 + 153849891 153850261 MSTA 426 - 12 426 114265 97 1 21 60 2 0 25 7 5 36 34 62 108 chain 8537 chrX 155270560 + 153884766 153884869 L1PA6 6164 - 2 103 168086 6 2 0 95 chain 29711 chrX 155270560 + 153884882 153885266 L1PA6 6164 + 5641 6035 85790 141 2 3 4 1 0 25 0 1 141 0 8 38 1 2 31 chain 34010 chrX 155270560 + 153889770 153890534 THE1D-int 1627 + 27 591 77603 137 302 0 181 10 112 134 chain 25061 chrX 155270560 + 153889918 153890209 AluYf4 310 - 17 309 104505 78 3 4 210 chain 510683 chrX 155270560 + 153893409 153899741 L1PA6 6164 - 2 6164 6098 6 2 0 841 0 8 838 0 3 97 4 0 6 1 5 454 0 1 484 1 21 106 317 0 102 0 1 593 5 9 261 0 1 76 0 1 211 0 95 25 0 3 84 0 2 138 0 1 92 6 3 111 3 0 232 1 0 427 0 17 225 1 0 582 chain 237221 chrX 155270560 + 153917100 153919702 L1PA3long 6157 + 3554 6156 16921 2602 chain 114187 chrX 155270560 + 153929871 153932369 L1MA2 4263 + 2502 4103 33034 142 1 0 33 0 1 4 1 0 15 5 0 213 0 2 125 0 1 190 1 0 65 52 1 52 39 38 190 1 0 10 17 13 65 1 0 33 825 0 15 1 0 98 3 0 32 0 2 41 0 1 74 1 0 6 2 1 87 15 8 43 chain 13028 chrX 155270560 + 153948366 153948534 Tigger3a 397 + 139 326 148143 9 0 10 128 0 9 31 chain 21632 chrX 155270560 + 153948686 153948924 AluYf4 310 + 67 303 121650 199 2 0 37 chain 12753 chrX 155270560 + 153967550 153967740 L1MA4 2864 + 2395 2584 149240 87 24 23 79 chain 4338 chrX 155270560 + 153969166 153969218 MER20 218 - 64 116 202736 52 chain 13182 chrX 155270560 + 153970602 153970764 MER47A 366 - 38 200 147541 162 chain 29421 chrX 155270560 + 153985774 153986090 AluYb8 318 - 2 318 86982 316 chain 29013 chrX 155270560 + 153996982 153997294 AluYb8 318 + 4 314 88927 128 2 0 182 chain 61425 chrX 155270560 + 154001571 154002243 SVA_F 1814 - 0 668 52140 12 1 0 621 1 0 11 2 0 24 chain 93434 chrX 155270560 + 154036458 154037729 L1PB2 3958 + 928 3836 38524 220 0 1649 124 3 6 380 2 0 13 3 0 43 1 0 14 1 0 27 0 1 21 0 5 8 2 0 13 11 7 86 3 0 72 1 0 62 1 0 73 2 0 22 2 1 61 chain 9336 chrX 155270560 + 154041199 154041317 MER4A 717 - 594 717 163874 98 0 5 20 chain 43680 chrX 155270560 + 154049645 154050235 MER4A1_ 611 - 14 609 64593 101 0 14 187 10 0 169 8 4 84 5 6 9 0 4 17 chain 61530 chrX 155270560 + 154053683 154054356 L1PA4 6152 + 5479 6152 52100 673 chain 5936 chrX 155270560 + 154059496 154059615 L1MB2 1706 - 48 202 185817 43 6 5 12 19 55 39 chain 9064 chrX 155270560 + 154061886 154061999 L1PA8 5853 + 5741 5853 165240 19 1 0 93 chain 546090 chrX 155270560 + 154071073 154077203 L1PA5 6144 - 0 6144 1932 275 1 2 56 0 1 510 1 6 2588 0 10 315 0 4 63 4 0 1079 2 0 666 10 9 560 chain 5380 chrX 155270560 + 154078279 154078341 MLT1B 390 - 46 108 191201 62 chain 361269 chrX 155270560 + 154096720 154100984 L1PA7 6471 + 2204 6469 11335 437 7 6 242 0 4 500 0 1 135 1 0 1569 4 5 518 1 0 326 1 0 246 1 2 264 2 0 10 chain 43823 chrX 155270560 + 154121021 154121645 MER4B 649 + 0 634 64419 31 11 30 29 0 2 19 12 11 234 10 5 62 4 0 141 1 0 70 chain 60464 chrX 155270560 + 154121855 154122587 MER4E1 777 + 0 759 52600 25 1 0 308 0 19 80 1 2 108 3 11 206 chain 8818 chrX 155270560 + 154137003 154137156 MER73 639 + 487 637 166564 17 4 0 9 7 11 11 3 1 49 2 1 51 chain 3736 chrX 155270560 + 154138145 154138205 L1MA4 2864 - 60 118 211365 31 8 6 21 chain 30339 chrX 155270560 + 154138495 154138840 L1PA5 6144 + 5783 6135 83808 206 0 7 139 chain 4395 chrX 155270560 + 154141581 154141630 THE1D 372 - 321 370 202002 49 chain 74138 chrX 155270560 + 154149488 154150308 L1PA5 6144 + 5318 6138 46438 820 chain 9087 chrX 155270560 + 154151957 154152063 THE1D-int 1627 + 1513 1622 165137 78 0 3 28 chain 15238 chrX 155270560 + 154152266 154152461 THE1B 368 + 175 368 140671 22 2 0 171 chain 79955 chrX 155270560 + 154152466 154154194 THE1B-int 1605 + 5 1593 43616 122 0 1 231 703 555 46 0 1 156 6 7 16 1 5 254 0 1 193 chain 26278 chrX 155270560 + 154154205 154154560 THE1B 368 + 0 368 98910 44 9 24 106 1 0 26 2 0 7 1 2 159 chain 546540 chrX 155270560 + 154167310 154173451 L1PA3long 6157 + 4 6157 1878 574 0 1 124 9 16 5099 0 1 323 0 3 12 chain 9386 chrX 155270560 + 154178339 154178457 MLT1B 390 - 211 329 163628 118 chain 29969 chrX 155270560 + 154191326 154191662 L1PA4 6152 - 1615 1955 84913 185 0 4 151 chain 22624 chrX 155270560 + 154204700 154204948 L1PA2 6032 - 2 250 117463 248 chain 15532 chrX 155270560 + 154204948 154205115 L1PA2 6032 + 5617 5784 139792 167 chain 24108 chrX 155270560 + 154210475 154210740 AluYf4 310 + 35 300 109703 265 chain 14575 chrX 155270560 + 154210779 154211144 Tigger2 2703 + 184 656 142669 86 38 41 61 62 90 16 41 117 61 chain 5003 chrX 155270560 + 154211793 154211854 Tigger2b_Pri 1066 + 317 378 195117 61 chain 4113 chrX 155270560 + 154217822 154217908 L1MD2 1676 - 654 747 205731 15 22 31 42 2 0 5 chain 8613 chrX 155270560 + 154237356 154237446 AluYb8 318 - 11 101 167665 90 chain 3948 chrX 155270560 + 154243101 154243168 L1ME1 1623 + 264 319 208154 46 12 0 9 chain 14506 chrX 155270560 + 154326081 154326263 AluY 311 + 92 297 142871 34 0 1 116 0 22 32 chain 5196 chrX 155270560 + 154362470 154362531 MER54B 801 + 740 801 193077 61 chain 16041 chrX 155270560 + 154372865 154373058 L1PA7 6471 + 6171 6364 138243 193 chain 8901 chrX 155270560 + 154373061 154373163 L1PA7 6471 + 6365 6467 166136 102 chain 425884 chrX 155270560 + 154378150 154383545 L1PB1 5432 - 28 5423 9398 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 13 1 16 1 0 44 2 1 14 2 1 53 2 0 9 16 11 13 1 0 20 13 11 297 1 9 173 11 14 618 1 0 23 6 7 230 3 6 111 0 1 35 0 1 46 6 0 6 0 6 222 8 7 473 2 0 183 0 1 142 1 0 247 1 0 832 0 7 161 7 6 329 5 6 309 0 4 23 16 17 78 0 1 66 3 0 84 0 10 111 0 2 180 1 0 6 1 0 4 chain 522769 chrX 155270560 + 154385705 154391608 L1PA4 6152 - 11 6151 4890 102 0 1 4613 0 3 625 5 238 558 chain 80286 chrX 155270560 + 154392078 154392966 L1PA4 6152 - 1 888 43477 257 1 0 630 chain 2880 chrX 155270560 + 154401448 154401484 L1MA4 2864 + 2769 2808 227361 30 0 3 6 chain 40227 chrX 155270560 + 154401675 154402138 LTR15 485 - 0 464 68991 35 0 1 36 1 0 305 0 1 86 chain 21137 chrX 155270560 + 154403742 154404104 THE1B 368 + 0 368 123420 104 12 13 52 65 71 68 1 0 60 chain 5256 chrX 155270560 + 154406632 154406839 L1MEf 1413 - 302 501 192443 25 121 115 31 2 0 28 chain 335327 chrX 155270560 + 154410624 154414398 L1PA5 6144 - 1 3779 12015 10 1 4 1243 1 2 1004 2 1 628 0 1 885 chain 298611 chrX 155270560 + 154419377 154424827 L1PA10 4194 - 33 4019 13495 11 1 0 6 0 1 27 3 0 623 1 0 87 1 3 267 2 0 152 0 33 153 33 0 93 3 4 19 4 8 50 0 3 9 16 6 313 1 0 296 0 1 215 322 0 30 1 2 224 4 5 469 1 0 70 2 1 5 0 1 79 0 1 29 1 5 118 1077 0 258 5 2 79 1 0 8 7 0 8 3 0 6 2 1 10 1 0 7 1 0 8 2 1 19 2 0 22 45 19 8 1 0 15 2 0 21 1 0 9 1 0 9 2 0 9 23 17 6 3 0 14 3 0 11 chain 82016 chrX 155270560 + 154423119 154424190 MER11A 1151 - 0 1151 42752 167 0 1 62 0 1 36 17 22 26 25 1 28 1 0 125 0 3 140 0 1 97 0 1 112 0 2 32 4 0 60 0 4 46 0 91 93 chain 558407 chrX 155270560 + 154425903 154432046 L1PA3long 6157 + 6 6157 464 734 1 2 65 0 1 60 0 1 546 0 1 2516 0 1 708 1 4 745 1 0 617 1 2 148 chain 122349 chrX 155270560 + 154451475 154452869 SVA_B 1603 - 2 1551 30268 12 10 5 570 0 39 56 0 82 112 0 40 489 1 0 144 chain 7851 chrX 155270560 + 154472699 154472794 L1P4 1494 - 844 939 171986 95 chain 11655 chrX 155270560 + 154495124 154495290 L1PA5 6144 + 5984 6137 153667 35 21 8 110 chain 18664 chrX 155270560 + 154512720 154512959 L1PA5 6144 - 0 267 131042 96 0 17 33 6 15 26 1 3 77 chain 9467 chrX 155270560 + 154515134 154515244 LTR9B 643 - 82 192 163239 110 chain 59768 chrX 155270560 + 154516198 154517462 L1PA14 3548 - 83 1030 52953 10 6 0 40 3 2 17 1 0 3 1 0 15 4 2 33 5 1 11 1 0 23 1 2 49 0 5 31 1 0 27 0 4 27 1 0 4 0 1 11 0 4 6 1 0 6 2 0 17 4 0 53 294 2 19 2 0 35 16 12 40 2 0 14 3 1 256 4 0 136 16 15 13 chain 24821 chrX 155270560 + 154521799 154522064 AluY 311 + 20 286 105760 112 0 1 153 chain 552378 chrX 155270560 + 154528888 154534914 L1PA2 6032 - 0 6032 1149 5147 0 1 550 0 6 72 5 4 252 chain 19136 chrX 155270560 + 154538789 154539157 THE1B 368 - 0 368 129722 61 13 1 56 14 22 14 40 39 33 7 11 14 9 10 107 chain 121733 chrX 155270560 + 154539162 154540981 THE1B-int 1605 - 5 1605 30467 198 2 0 166 3 1 19 249 0 181 0 1 82 0 1 9 0 1 84 1 2 388 10 35 246 0 3 161 8 10 12 chain 22016 chrX 155270560 + 154540981 154541343 THE1B 368 - 0 366 120159 125 63 66 60 10 11 104 chain 23817 chrX 155270560 + 154541632 154542131 L1PREC2 3366 - 329 786 111384 27 6 4 10 47 33 11 3 0 26 7 5 11 10 5 17 29 21 13 3 0 4 1 0 38 14 13 47 2 0 10 1 0 162 chain 34524 chrX 155270560 + 154545925 154546371 MLT2A1 477 - 0 475 76873 48 1 0 8 6 39 212 4 1 167 chain 38679 chrX 155270560 + 154546375 154548565 L1PB1 5432 + 2315 4510 23243 142 0 3 35 10 6 22 11 12 47 0 5 73 35 34 25 0 1 116 7 1 86 22 26 44 1 0 4 0 1 7 0 3 683 0 1 40 1 0 5 5 0 219 0 1 36 0 2 316 0 1 198 chain 457318 chrX 155270560 + 154549198 154555061 L1PA8 5853 + 50 5853 8497 20 5 3 9 1 0 6 59 20 31 0 1 47 0 1 117 0 4 236 0 1 121 30 28 849 1 0 5 0 1 249 0 4 471 0 4 297 0 1 50 0 3 259 1 0 230 0 23 10 0 1 62 0 1 170 1 0 658 1 0 4 3 12 143 0 1 132 65 0 72 30 0 189 0 1 324 0 1 87 2 0 31 3 9 515 1 0 44 2 0 46 20 38 28 0 9 14 5 4 13 1 0 93 chain 5917 chrX 155270560 + 154555136 154555471 L1PB1 5432 + 5114 5422 23243 24 8 6 12 2 0 3 2 0 9 2 0 52 2 1 16 2 1 43 1 0 9 30 22 14 3 1 5 1 0 14 2 0 23 2 1 21 1 0 13 3 2 16 chain 6282 chrX 155270560 + 154558734 154558813 MADE1 96 + 0 96 182936 28 0 17 51 chain 23936 chrX 155270560 + 154558813 154559215 L1MA2 4263 + 3727 4114 110715 65 17 14 11 2 0 141 9 7 42 5 4 33 1 2 10 16 9 40 1 0 9 chain 21701 chrX 155270560 + 154566594 154566971 L1PB4 2604 - 357 711 121381 44 32 0 42 7 10 34 4 3 78 4 7 44 1 2 32 14 17 41 chain 165015 chrX 155270560 + 154569411 154571208 L1PA4 6152 - 1 1798 22653 1797 chain 10414 chrX 155270560 + 154571487 154571634 L1MA2 4263 - 158 298 158623 47 7 0 93 chain 3091 chrX 155270560 + 154572975 154573012 L1MA3 4352 - 200 237 223081 37 chain 248499 chrX 155270560 + 154584378 154587802 L1PA13 3608 + 116 3479 16338 16 18 15 16 1 0 14 6 3 21 28 17 66 13 11 107 12 11 15 1 0 17 0 3 5 1 0 4 14 6 19 1 0 16 8 6 12 16 13 53 1 6 39 6 1 6 0 3 244 1 0 394 2 0 621 2 1 5 0 1 25 22 14 19 3 7 59 1 2 7 1 0 4 1 0 1088 1 0 32 1 0 66 2 0 48 0 1 61 1 0 20 4 0 35 21 12 40 2 0 5 2 0 17 1 0 14 chain 280678 chrX 155270560 + 154618689 154622036 HERVL-int 5654 - 732 5654 14607 118 0 6 704 0 2 515 1 0 282 0 2 319 0 1554 22 0 7 198 0 1 10 0 1 835 0 3 68 4 6 5 2 0 264 chain 32463 chrX 155270560 + 154622037 154622468 MLT2A1 477 - 7 477 80089 30 13 58 176 7 3 33 4 1 13 0 1 155 chain 87443 chrX 155270560 + 154622732 154624527 L1PREC2 3366 + 1590 3242 40581 4 1 0 26 1 2 13 82 79 5 0 2 62 27 13 34 8 9 29 0 6 145 0 1 60 1 4 66 1 0 45 0 1 52 5 7 100 0 4 165 5 4 56 3 0 155 1 2 7 1 0 4 2 0 47 8 7 44 1 0 3 3 0 14 29 21 17 9 4 12 7 5 25 41 24 31 8 6 35 1 0 4 165 90 14 56 41 18 11 6 8 4 0 14 chain 32444 chrX 155270560 + 154624585 154625014 LTR3A 482 + 0 442 80121 19 2 1 123 18 19 33 0 14 46 1 0 5 1 0 120 0 1 61 chain 78618 chrX 155270560 + 154631933 154632801 L1PA3long 6157 + 5285 6157 44217 722 1 5 145 chain 35161 chrX 155270560 + 154632826 154633404 L1PB1 5432 + 4853 5404 75970 46 0 2 55 0 5 6 5 1 135 13 13 18 1 0 10 1 0 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 2 0 11 9 0 16 2 0 5 21 18 20 1 0 22 1 0 12 chain 15023 chrX 155270560 + 154648348 154648529 AluSc5 308 - 6 186 141263 79 1 0 101 chain 556439 chrX 155270560 + 154651635 154657773 L1PA3long 6157 + 1 6153 680 4306 0 1 49 0 4 855 1 2 89 1 0 700 0 1 105 1 9 31 chain 55480 chrX 155270560 + 154659514 154660114 L1PA5 6144 - 3234 3834 55425 600 chain 282107 chrX 155270560 + 154660122 154663341 L1PA5 6144 + 2917 6142 14531 174 0 2 70 0 1 238 2 0 5 0 2 87 0 1 436 0 1 410 0 4 175 0 1 681 0 1 88 1 0 841 4 0 7 chain 118764 chrX 155270560 + 154680875 154682458 THE1B-int 1605 + 0 1605 31510 174 0 24 232 38 21 231 1 0 7 47 68 416 5 0 432 chain 250990 chrX 155270560 + 154712421 154715878 L1PA13 3608 - 129 3522 16179 13 1 0 18 2 0 5 2 0 40 21 12 29 4 0 26 1 0 63 0 1 51 2 0 61 1 0 32 1 0 1088 1 0 4 1 0 7 1 2 62 0 4 13 1 0 10 17 10 25 0 1 5 2 1 621 2 0 394 1 0 250 2 0 43 1 6 53 16 13 12 8 6 16 1 0 19 6 2 16 2 0 17 1 0 15 12 11 107 13 11 66 28 17 21 6 3 12 2 1 17 18 15 16 9 7 19 1 0 4 chain 10414 chrX 155270560 + 154728578 154728725 L1MA2 4263 + 3965 4105 158622 93 7 0 47 chain 164596 chrX 155270560 + 154729004 154730801 L1PA4 6152 + 4354 6151 22729 1797 chain 21701 chrX 155270560 + 154733241 154733618 L1PB4 2604 + 1893 2247 121380 41 14 17 32 1 2 44 4 7 78 4 3 34 7 10 41 32 0 45 chain 72843 chrX 155270560 + 154739913 154740718 L1PA3long 6157 - 0 806 47102 7 0 1 798 chain 38427 chrX 155270560 + 154741834 154742258 L1PA3long 6157 - 4 427 71543 144 1 0 279 chain 567136 chrX 155270560 + 154745677 154751709 L1HS 6032 - 0 6032 81 6032 chain 18054 chrX 155270560 + 154754779 154755134 MSTA 426 + 0 404 132714 100 39 63 32 58 62 36 3 24 87 chain 13263 chrX 155270560 + 154756793 154757084 MSTA 426 + 0 336 147238 100 23 47 12 0 4 36 1 48 11 61 10 24 4 25 19 chain 14616 chrX 155270560 + 154758199 154758497 L1PB3 3668 - 48 320 142532 21 7 4 13 2 1 12 7 3 37 3 1 25 1 0 3 1 0 18 18 5 75 17 16 38 chain 102944 chrX 155270560 + 154770709 154771926 L1PA7 6471 - 1 1220 36008 154 7 8 604 0 1 452 chain 38755 chrX 155270560 + 154779405 154779877 L1PA7 6471 - 16 492 71071 57 2 4 78 0 1 183 0 1 152 chain 99482 chrX 155270560 + 154784547 154785693 L1PA6 6164 - 2 1160 36905 247 0 1 34 0 3 508 0 3 16 0 1 33 0 4 308 chain 77166 chrX 155270560 + 154786015 154787062 MER11C 1089 - 26 1089 44875 25 0 1 117 1 0 45 10 11 126 0 1 38 1 0 4 1 5 112 16 15 178 2 1 63 0 4 54 7 16 247 chain 122041 chrX 155270560 + 154791147 154792796 THE1D-int 1627 - 2 1627 30371 68 0 1 30 0 4 46 2 3 416 0 1 241 0 10 114 4 2 161 25 16 85 57 23 292 0 4 108 chain 559265 chrX 155270560 + 154797514 154803654 L1PA3long 6157 + 6 6157 399 567 0 4 1715 0 1 404 1 0 294 0 3 40 0 1 141 1 0 1978 0 4 999 chain 226128 chrX 155270560 + 154810418 154812986 L1PA5 6144 + 3565 6137 17524 649 0 1 917 0 1 197 0 2 805 chain 11473 chrX 155270560 + 154813026 154813188 THE1B 368 - 199 368 154409 100 18 25 44 chain 23325 chrX 155270560 + 154815611 154815903 AluSp 311 + 9 298 114056 34 1 0 89 3 0 96 1 2 68 chain 32177 chrX 155270560 + 154826546 154826894 L1PA4 6152 - 6 354 80567 348 chain 69204 chrX 155270560 + 154826894 154828368 L1PA4 6152 + 5378 6146 48719 292 706 0 476 chain 64478 chrX 155270560 + 154858679 154859413 L1PA5 6144 - 0 744 50810 63 0 10 671 chain 15821 chrX 155270560 + 154864276 154864498 MER41-int 2638 - 667 887 138890 96 18 16 108 chain 45094 chrX 155270560 + 154864572 154865117 L1PA7 6471 - 23 569 62942 120 1 0 4 0 1 46 1 2 373 chain 29916 chrX 155270560 + 154865117 154865494 L1PA7 6471 + 5554 5930 84581 22 1 0 45 1 0 82 0 1 226 chain 28274 chrX 155270560 + 154866544 154866851 L1PA3long 6157 + 5846 6153 92026 307 chain 51871 chrX 155270560 + 154871051 154871746 LTR30 714 - 0 714 57700 23 1 0 37 6 8 11 7 6 5 1 0 163 7 18 187 1 6 189 0 4 57 chain 120032 chrX 155270560 + 154876969 154878408 L1PA7 6471 - 4 1448 31045 6 4 0 140 0 1 346 5 6 99 0 1 165 0 1 62 9 10 6 0 3 281 0 1 316 chain 133690 chrX 155270560 + 154878408 154879978 L1PA7 6471 + 3433 5017 27278 64 1 0 52 0 4 255 0 1 5 1 0 635 0 1 157 0 2 57 0 8 343 chain 170046 chrX 155270560 + 154885382 154887724 L1P3 4156 - 1808 4156 22043 231 22 30 326 6 5 23 12 13 74 1 2 48 0 3 252 2 1 417 17 1 217 45 48 35 5 10 6 3 0 192 17 10 83 2 1 58 7 21 241 chain 47642 chrX 155270560 + 154901335 154901867 L1PA3long 6157 - 1027 1559 60610 532 chain 92588 chrX 155270560 + 154901867 154902885 L1PA3long 6157 + 5138 6157 38789 871 0 1 147 chain 3544 chrX 155270560 + 154907257 154907296 LTR79 453 + 320 359 214648 39 chain 20261 chrX 155270560 + 154908618 154908860 L1PA6 6164 + 5915 6157 126340 242 chain 3026 chrX 155270560 + 154914805 154914839 L1MEf 1413 - 729 763 224446 34 chain 2743 chrX 155270560 + 154917558 154917598 L1PA8 5853 + 5711 5750 229566 29 2 1 9 chain 39571 chrX 155270560 + 154918125 154919016 L1PA11 4918 - 340 983 69934 11 2 0 13 1 0 15 28 21 10 5 0 20 1 0 11 9 7 62 16 13 12 246 19 26 13 8 104 0 5 286 chain 39656 chrX 155270560 + 154920810 154921310 MER75 514 + 11 513 69819 485 0 2 15 chain 300980 chrX 155270560 + 154930281 154933492 L1HS 6032 - 0 3220 13376 44 0 9 3167 chain 8048 chrX 155270560 + 154942767 154942865 L1PA8 5853 - 0 97 170768 93 1 0 4 chain 39037 chrX 155270560 + 154947066 154947559 L1PA8 5853 - 3 490 70680 89 2 1 19 2 1 52 1 0 6 1 0 74 2 0 44 1 0 72 0 1 128 chain 13083 chrX 155270560 + 154952201 154952411 L1MA3 4352 + 106 313 147908 35 2 1 8 1 0 20 16 15 128 chain 513460 chrX 155270560 + 154952467 154958485 L1PA6 6164 - 19 6042 5840 29 0 1 1072 1 0 618 20 1 100 14 0 627 0 1 166 1 0 265 0 1 74 0 1 1202 0 17 15 0 1 499 0 5 458 0 7 332 1 6 235 1 2 288 chain 85446 chrX 155270560 + 154969674 154970700 MER11A 1151 + 0 1151 41366 86 0 91 22 2 0 95 0 2 92 0 1 290 0 1 90 3 0 38 0 1 12 5 38 172 0 1 119 chain 168000 chrX 155270560 + 154970716 154972935 L1PA10 4194 + 634 2891 22285 49 9 8 11 0 9 8 9 0 392 1 0 146 0 3 30 0 1 21 6 11 511 0 3 385 0 4 20 12 16 264 2 1 5 0 15 81 9 11 37 3 7 208 chain 17277 chrX 155270560 + 154979729 154979993 L1PA16 3655 + 3378 3619 134842 200 36 18 7 5 0 16 chain 33521 chrX 155270560 + 154991047 154991501 L1PA16 3655 - 237 685 78368 126 6 4 83 2 1 108 10 4 79 0 3 40 chain 36043 chrX 155270560 + 154992322 154992848 L1PA16 3655 + 3047 3563 74844 105 6 0 43 3 1 5 1 0 89 2 0 43 4 0 45 0 6 107 16 15 57 chain 78352 chrX 155270560 + 155016467 155017312 L1PA3long 6157 - 1 846 44351 845 chain 2624 chrX 155270560 + 155033285 155033388 LTR14B 630 - 394 452 231388 23 57 14 5 2 0 16 chain 7222 chrX 155270560 + 155038314 155038417 L1PA13 3608 - 165 266 175931 41 8 6 54 chain 520700 chrX 155270560 + 155038461 155044631 L1PA6 6164 + 0 6161 5081 369 0 8 11 16 15 96 13 12 123 0 1 307 0 6 692 1 0 195 1 0 18 0 5 476 22 8 655 0 1 69 0 1 19 2 1 97 2 0 4 0 1 317 0 4 851 0 4 58 20 1 1736 chain 18826 chrX 155270560 + 155065002 155065358 THE1B 368 + 0 368 130588 47 32 39 20 16 17 46 5 4 5 0 1 5 1 0 14 0 3 7 4 8 16 1 0 7 5 4 125 chain 33560 chrX 155270560 + 155065577 155066028 L1PA11 4918 - 474 920 78306 34 8 7 9 2 1 63 3 0 332 chain 28733 chrX 155270560 + 155067856 155068160 AluYa5 310 - 6 310 90194 304 chain 24608 chrX 155270560 + 155070497 155070785 AluSp 311 - 13 301 106948 288 chain 21942 chrX 155270560 + 155071502 155071845 THE1B 368 + 0 368 120452 5 0 1 38 5 20 108 1 0 26 35 45 125 chain 117215 chrX 155270560 + 155071845 155073309 THE1B-int 1605 + 0 1605 32051 430 0 25 298 19 133 74 0 1 379 0 1 264 chain 328762 chrX 155270560 + 155081327 155085082 L1PA5 6144 - 14 3774 12246 499 1 0 14 1 0 12 2 1 4 1 0 116 0 10 183 1 0 633 1 0 135 0 1 590 0 1 145 1 0 284 1 2 211 1 0 919 chain 69679 chrX 155270560 + 155094865 155095967 LTR12D 1347 + 0 1347 48535 182 43 44 72 1 38 30 38 33 49 0 1 87 0 31 15 0 78 34 0 41 103 30 52 119 23 0 13 7 1 16 10 41 144 0 33 22 3 7 61 chain 40656 chrX 155270560 + 155098266 155098756 LTR3B_ 500 - 0 494 68360 94 0 2 100 0 1 141 0 1 155 chain 18951 chrX 155270560 + 155109111 155109335 MER41A 554 - 330 554 130224 224 chain 156981 chrX 155270560 + 155131184 155132894 L1PA3long 6157 - 1148 2862 23726 651 0 4 1059 chain 102695 chrX 155270560 + 155132894 155134028 L1PA3long 6157 + 5021 6157 36029 637 0 1 355 0 1 142 chain 111841 chrX 155270560 + 155136947 155138256 SVA_D 2077 - 9 2071 33707 514 0 741 47 41 41 539 1 21 140 8 0 19 chain 543024 chrX 155270560 + 155142027 155148431 L1PA7 6471 - 2 6471 2338 154 1 0 6 1 2 520 39 25 59 1 0 79 0 3 667 1 0 84 0 13 1356 2 0 74 0 1 342 0 1 186 1 8 15 0 1 232 0 1 1207 0 1 6 0 50 162 0 4 740 0 1 469 chain 39557 chrX 155270560 + 155155078 155155550 MER4A1 472 - 0 472 69952 10 0 1 4 1 0 457 chain 20413 chrX 155270560 + 155156798 155157034 L1PA7 6471 + 6224 6461 125857 91 0 1 145 chain 28696 chrX 155270560 + 155158849 155159230 LTR23 429 - 49 429 90342 101 1 0 69 0 1 95 14 13 21 1 0 12 0 1 67 chain 538389 chrX 155270560 + 155160381 155166487 L1PA5 6144 - 5 6141 3089 848 1 0 140 1 6 856 1 3 286 0 4 707 1 0 161 0 5 1441 0 1 446 1 0 201 0 1 274 0 1 624 1 15 116 chain 8962 chrX 155270560 + 155166546 155166692 L1M3 994 + 172 318 165812 28 17 18 77 1 0 23 chain 7046 chrX 155270560 + 155186096 155186200 LTR7B 505 + 402 505 177146 39 15 14 50 chain 46690 chrX 155270560 + 155187799 155188489 LTR30 714 - 0 714 61467 23 1 0 30 0 1 6 6 8 11 7 6 5 1 0 54 0 1 5 9 10 18 13 12 63 7 18 14 0 1 5 0 1 19 3 4 143 1 6 184 0 4 62 chain 3426 chrX 155270560 + 155191072 155191110 U3 216 - 178 216 216636 38 chain 72205 chrX 155270560 + 155193575 155194542 MER11A 1151 - 16 997 47373 144 9 10 60 0 1 34 18 0 24 8 41 133 7 8 136 5 6 50 1 0 44 0 1 149 4 0 66 1 0 74 chain 35520 chrX 155270560 + 155198616 155199069 LTR2 463 - 8 463 75524 80 14 15 94 4 5 261 chain 516687 chrX 155270560 + 155199080 155206117 HERVE_a-int 7009 - 3 6853 5519 7 1 0 8 2 0 25 32 24 15 4 2 34 2 0 24 1 0 13 3 1 6 1 0 32 1 0 25 3 1 54 3 0 26 4 0 9 2 1 55 7 5 27 1 0 4 1 0 43 9 8 17 1 0 37 1 0 7 2 0 5 1 0 16 2 1 9 1 0 31 1 0 47 1 0 134 8 7 71 4 3 11 1 0 20 2 0 57 1 0 5 1 0 12 3 2 101 2 0 17 1 2 240 1 0 10 2 1 86 1 0 29 1 0 36 1 0 7 1 0 74 38 35 114 9 0 229 0 1 88 5 7 546 0 5 585 2 1 31 0 2 259 1 0 140 0 1 24 1 0 54 0 1 275 1 0 88 1 0 405 9 8 160 2 1 36 2 1 14 2 1 143 1 0 8 7 5 17 13 8 29 6 4 25 2 1 12 6 7 15 1 0 11 1 0 13 0 1 4 1 0 32 2 1 10 1 0 23 2 1 17 1 0 24 1 0 43 2 1 32 2 1 8 1 0 36 1 0 62 1 0 29 0 1 8 1 0 27 15 14 20 26 23 9 1 0 12 1 0 20 1 0 18 1 0 116 1 0 16 1 0 19 4 3 58 3 1 56 1 0 5 1 0 5 1 0 10 1 0 7 8 6 20 2 1 16 1 0 6 2 1 19 4 0 11 1 0 3 1 0 19 1 0 21 1 0 52 1 0 12 2 0 42 1 0 13 0 4 15 2 1 73 9 7 13 15 14 67 1 0 27 2 0 55 1 0 10 1 0 33 2 1 15 1 0 12 1 0 99 1 0 34 1 0 53 1 0 21 1 0 44 1 0 25 4 2 34 28 0 19 1 0 4 1 0 4 2 1 6 1 0 7 1 0 4 15 10 14 1 0 8 1 0 8 1 0 3 1 0 22 15 11 66 1 0 6 1 0 29 chain 17536 chrX 155270560 + 155206873 155207105 LTR2 463 - 0 233 134167 87 13 14 132 chain 40393 chrX 155270560 + 155212161 155212697 THE1D-int 1627 + 0 537 68751 141 0 2 163 13 12 219 chain 19927 chrX 155270560 + 155217605 155217945 THE1D 372 + 18 372 127370 45 0 1 38 1 0 33 80 94 143 chain 3570 chrX 155270560 + 155247383 155247457 L1MC 810 + 240 313 214126 34 17 16 23 chain 109268 chrX 155270560 + 155248141 155249512 L1P1 4361 + 15 1405 34380 107 0 14 15 9 10 15 13 12 37 1 0 64 1 0 48 7 6 193 1 0 701 1 0 44 0 10 114 chain 40332 chr8 146364022 + 49876 50533 LTR9B 643 + 0 643 68830 133 0 2 65 4 9 5 0 2 172 5 6 35 67 41 30 7 0 11 0 10 70 13 12 40 chain 56353 chr8 146364022 + 51817 52879 MER4E1 777 + 0 768 54931 17 4 0 24 1 0 155 7 5 4 1 0 127 310 0 158 5 27 26 9 7 6 0 4 208 chain 19032 chr8 146364022 + 64142 64437 LTR39 781 - 307 604 130024 30 14 23 138 23 16 90 chain 9225 chr8 146364022 + 64447 64555 L1PA4 6152 - 0 113 164424 6 0 5 102 chain 4177 chr8 146364022 + 85695 85742 L1PA6 6164 - 5 52 204868 47 chain 22970 chr8 146364022 + 87185 87451 L1PA5 6144 - 2 272 115753 53 0 4 213 chain 23685 chr8 146364022 + 96018 96327 L1PA8A 6298 + 5870 6175 112126 129 9 9 126 4 0 41 chain 136984 chr8 146364022 + 98840 100583 SVA_F 1814 - 0 1479 26644 10 2 0 597 51 0 244 0 15 13 225 0 47 1 0 553 chain 15034 chr8 146364022 + 99757 99917 SVA_F 1814 - 688 848 89272 160 chain 3799 chr8 146364022 + 99917 99968 SVA_F 1814 - 672 723 124938 51 chain 8351 chr8 146364022 + 101103 101196 L1PA5 6144 + 6046 6139 169114 93 chain 65656 chr8 146364022 + 103111 103833 L1PA4 6152 - 178 900 50270 722 chain 14717 chr8 146364022 + 103833 103999 L1PA4 6152 + 5975 6141 142209 166 chain 510039 chr8 146364022 + 106283 112706 L1PA7 6471 + 0 6468 6162 196 3 2 63 2 3 148 11 7 141 1 8 49 17 18 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 248 0 5 131 0 35 125 0 2 55 2 0 191 1 2 457 1 0 256 0 1 12 1 0 17 7 11 423 1 0 246 1 2 142 2 0 9 chain 24871 chr8 146364022 + 127420 127963 L2c 621 - 0 521 105507 15 4 0 12 11 13 53 6 0 125 1 0 60 9 0 9 70 77 68 15 16 35 26 14 24 chain 3843 chr8 146364022 + 160642 160685 MER72 723 + 680 723 209741 43 chain 89193 chr8 146364022 + 202710 204824 L1PA6 6164 + 5054 6154 39931 58 1014 0 141 1 0 62 0 3 80 1 0 594 17 14 4 0 1 97 0 1 45 chain 83555 chr8 146364022 + 202773 203782 LTR5B 1012 + 0 1012 42094 101 8 10 472 5 4 116 0 1 51 0 1 256 chain 35165 chr8 146364022 + 205976 206447 THE1B-int 1605 - 1108 1604 75964 40 0 25 387 12 15 6 3 0 23 chain 50169 chr8 146364022 + 257726 258286 L1PA3long 6157 + 5597 6157 58891 560 chain 18341 chr8 146364022 + 307457 307690 L1PB1 5432 + 4586 4819 131953 41 3 0 53 0 3 136 chain 28077 chr8 146364022 + 310024 310322 AluYg6 310 + 0 298 92725 298 chain 535911 chr8 146364022 + 316567 322720 L1PA4 6152 - 17 6152 3457 48 13 0 11 7 0 29 0 3 1844 0 1 1260 0 1 618 1 0 148 1 0 350 1 2 384 0 2 270 0 3 385 6 0 77 2 1 698 chain 43080 chr8 146364022 + 390592 391090 L1PA7 6471 - 6 502 65318 6 2 0 490 chain 21989 chr8 146364022 + 391097 391348 L1PA7 6471 + 5041 5292 120272 251 chain 53712 chr8 146364022 + 391349 391997 L1PA7 6471 + 5292 5952 56536 322 0 3 83 0 2 15 1 4 148 0 4 79 chain 10450 chr8 146364022 + 448950 449068 THE1D 372 + 254 372 158491 118 chain 4861 chr8 146364022 + 459861 459922 MER4A1 472 + 0 61 196673 61 chain 6598 chr8 146364022 + 467832 467943 L1MC1 2226 + 1942 2048 180468 36 20 15 55 chain 8116 chr8 146364022 + 469684 469864 LTR38C 690 - 57 280 170411 12 1 0 14 7 51 24 3 6 35 40 37 44 chain 33391 chr8 146364022 + 472283 472753 LTR15 485 + 0 475 78587 107 0 1 16 4 0 26 9 11 121 0 4 37 2 1 4 0 1 108 1 0 5 2 0 14 3 8 11 chain 110255 chr8 146364022 + 475640 478524 L1MA3 4352 + 41 3843 34140 66 0 4 34 0 13 17 1 0 65 0 3 38 1260 2138 35 15 32 22 11 6 74 0 1 92 4 7 37 1 0 125 0 6 16 0 2 177 21 14 114 0 4 96 8 9 245 0 1 239 13 12 58 chain 23435 chr8 146364022 + 500286 500653 THE1B 368 + 0 368 113448 15 2 0 23 1 6 63 8 19 7 11 0 7 1 2 29 4 3 24 2 0 170 chain 98600 chr8 146364022 + 501348 502624 HSMAR1 1287 + 0 1287 37125 105 9 13 13 0 1 9 0 2 26 0 1 361 4 5 19 1 0 187 2 0 154 0 1 47 0 3 109 0 1 230 chain 203952 chr8 146364022 + 508735 511835 L1PA8A 6298 + 3167 5854 18928 89 17 18 73 5 3 64 1 5 56 1 0 108 1 0 287 2 3 32 0 1 192 5 4 170 1 3 116 1 3 143 1 9 279 1 0 71 441 0 588 1 0 138 0 1 82 0 1 65 0 14 69 chain 18907 chr8 146364022 + 510580 510856 L1PA8 5853 + 5583 5853 130344 26 2 0 64 7 6 13 4 3 45 4 3 17 1 0 93 chain 4620 chr8 146364022 + 513094 513166 MER31A 484 - 226 299 199405 46 7 8 19 chain 32435 chr8 146364022 + 521069 521495 MER41C 542 - 49 518 80142 176 2 4 25 0 18 132 0 3 34 0 18 32 0 2 25 chain 508033 chr8 146364022 + 533797 540193 L1PA6 6164 - 7 6164 6316 139 0 4 695 1 5 61 0 4 364 0 1 206 0 1 58 7 13 711 1 0 543 0 3 159 0 1 4 2 0 222 1 0 48 0 3 136 0 1 176 0 2 272 1 0 91 3 0 280 1 0 60 0 4 42 317 0 307 4 8 81 1 0 13 0 5 578 1 26 21 1 18 281 1 0 47 0 3 264 18 19 177 chain 2724 chr8 146364022 + 573406 573468 L1MB7 1623 + 582 643 229802 26 20 19 16 chain 21387 chr8 146364022 + 628565 628822 AluSc8 310 + 38 299 122560 93 0 4 164 chain 70826 chr8 146364022 + 634633 635715 MER11B 1079 - 0 1079 48001 29 1 0 170 0 1 54 4 5 23 23 27 29 18 8 17 0 15 106 0 1 47 17 9 19 0 1 7 31 19 18 18 17 232 0 5 166 9 10 44 chain 545361 chr8 146364022 + 723352 729366 L1PA2 6032 - 6 6031 2027 3209 0 1 1304 0 1 195 0 4 546 0 5 396 0 1 108 1 0 255 chain 3084 chr8 146364022 + 744122 744155 Harlequin-int 5206 + 2430 2463 223269 33 chain 43798 chr8 146364022 + 744271 744775 MER9a1 513 - 4 513 64456 193 0 5 311 chain 79080 chr8 146364022 + 765840 768066 L1PBa 3878 - 1819 3759 44016 19 0 3 201 7 8 206 2 0 8 27 16 30 1 2 247 0 3 50 0 1 58 1 0 74 8 9 61 8 11 63 1012 776 50 66 17 27 chain 76775 chr8 146364022 + 777833 778880 MER11C 1089 - 26 1089 45092 25 0 1 117 1 0 56 0 1 125 0 1 38 1 0 4 1 5 112 46 45 148 1 0 64 0 4 40 21 30 247 chain 101033 chr8 146364022 + 781220 782422 L1PA6 6164 - 2 1206 36504 9 0 2 56 2 0 490 0 1 182 0 3 119 1 0 338 1 0 4 chain 403014 chr8 146364022 + 833742 838859 L1PA8A 6298 - 58 5455 9999 670 0 2 68 0 6 19 1 2 188 2 3 182 1 0 311 0 3 29 0 3 79 0 2 20 2 0 107 0 4 237 0 1 115 0 2 52 4 224 36 1 2 213 0 1 148 6 27 17 0 2 40 3 7 19 1 0 7 0 1 25 15 17 370 1 0 6 0 4 459 2 0 59 2 0 5 0 2 86 1 0 382 0 1 172 4 1 187 2 0 3 7 0 131 0 4 9 9 10 158 13 23 53 2 0 83 2 0 25 2 5 10 0 3 194 0 16 10 15 0 35 chain 28805 chr8 146364022 + 838876 839287 LTR7 482 - 0 482 89865 190 9 41 26 0 1 109 23 61 54 chain 30938 chr8 146364022 + 866299 866664 L1PA5 6144 + 5756 6141 82619 115 0 1 109 1 20 140 chain 89851 chr8 146364022 + 922635 923663 SVA_C 1631 - 17 1283 39704 314 0 1 255 0 87 47 1 0 46 1 0 13 0 40 175 1 0 56 0 113 119 chain 35367 chr8 146364022 + 1095623 1095999 L1PA3long 6157 - 8 384 75709 376 chain 547281 chr8 146364022 + 1117891 1124028 L1PA3long 6157 - 8 6156 1797 495 0 1 2676 0 2 238 1 0 1545 0 3 460 0 1 313 0 3 116 1 0 143 0 1 22 1 2 57 0 1 69 chain 3516 chr8 146364022 + 1124261 1124299 HAL1-2a_MD 234 + 84 122 215137 38 chain 14283 chr8 146364022 + 1126062 1126391 THE1D 372 - 32 372 143614 116 54 64 22 76 77 61 chain 68588 chr8 146364022 + 1142678 1143487 L1PA4 6152 - 5 814 48994 30 9 0 7 0 9 763 chain 11898 chr8 146364022 + 1158912 1159234 L1PB 1623 + 1308 1586 152613 34 9 1 103 1 0 7 2 1 11 120 88 22 2 0 11 chain 7586 chr8 146364022 + 1167540 1167650 L1PREC2 3366 - 768 880 173633 38 8 10 64 chain 18441 chr8 146364022 + 1178026 1178237 L1PA5 6144 + 5929 6143 131669 5 0 3 206 chain 13189 chr8 146364022 + 1208366 1208595 L1PA8 5853 + 5622 5853 147511 36 0 2 18 2 1 11 1 0 12 2 0 38 2 1 19 12 11 37 1 5 32 0 2 6 chain 26318 chr8 146364022 + 1251278 1251582 AluY 311 + 4 309 98746 128 1 2 175 chain 42151 chr8 146364022 + 1384208 1384754 MLT2A2 560 - 0 560 66454 87 0 2 58 6 17 216 1 0 115 0 1 7 0 1 56 chain 309461 chr8 146364022 + 1393260 1396775 L1PA4 6152 - 5 3525 13025 197 11 10 639 1 0 1326 0 6 30 0 1 1311 chain 19133 chr8 146364022 + 1438989 1439200 L1PA4 6152 + 5940 6151 129729 211 chain 16474 chr8 146364022 + 1477223 1477462 THE1D 372 - 24 277 136995 124 1 0 24 23 38 67 chain 77419 chr8 146364022 + 1477895 1478951 MER11C 1089 - 16 1089 44766 8 0 1 91 5 6 47 1 0 54 0 1 127 0 1 38 1 0 4 1 5 95 64 63 146 1 0 65 0 4 62 0 9 246 chain 118974 chr8 146364022 + 1523656 1525011 L1PA5 6144 - 20 1380 31425 308 5 6 873 0 4 169 chain 16871 chr8 146364022 + 1525011 1525205 L1PA5 6144 + 4558 4753 135703 181 0 1 13 chain 28884 chr8 146364022 + 1543547 1543861 AluYb8 318 + 0 310 89524 126 4 0 184 chain 461101 chr8 146364022 + 1544048 1549746 L1PA7 6471 - 10 5718 8357 104 1 0 734 4 0 106 0 12 404 6 0 6 5 12 38 14 15 81 5 0 635 0 5 812 2 0 393 0 4 210 0 4 109 15 0 143 0 2 109 1 3 1022 0 3 29 9 10 257 0 1 395 0 1 49 chain 554822 chr8 146364022 + 1555743 1561721 L1PA2 6032 + 51 6032 845 1960 0 3 4018 chain 18940 chr8 146364022 + 1595454 1595683 AluY 311 + 84 311 130250 37 3 0 11 0 1 178 chain 4954 chr8 146364022 + 1606556 1606620 L1PA7 6471 - 6 67 195657 8 3 0 53 chain 135889 chr8 146364022 + 1606628 1608431 L1P2 5180 - 1642 3449 26861 49 0 2 90 2 1 179 0 13 213 23 7 15 17 23 258 2 1 739 2 1 49 0 5 8 17 8 9 0 1 9 0 5 122 chain 8121 chr8 146364022 + 1647391 1647487 AluY 311 + 36 132 170373 96 chain 461033 chr8 146364022 + 1660193 1671246 L1PA7 6471 + 450 6459 8362 124 24 20 16 23 24 65 3 4 234 8 7 397 2 0 5 3 6 140 0 3 540 1 0 106 0 1 38 0 1 177 302 0 281 1 2 98 5 8 91 2 0 6 9 10 9 0 2 285 337 0 12 5 0 110 0 2 38 315 0 123 1 2 65 0 3 76 0 5 598 0 2 217 4126 10 261 0 1 439 0 2 288 13 11 206 1 0 15 9 13 51 0 1 108 7 10 378 0 1 117 0 1 65 0 1 77 chain 51131 chr8 146364022 + 1665085 1665659 L1PA4 6152 - 3507 4081 57850 574 chain 310186 chr8 146364022 + 1665659 1669151 L1PA4 6152 + 2644 6141 12997 59 0 5 463 1 0 6 1 0 25 2 1 376 0 1 285 1 0 560 0 1 77 0 3 788 1 0 847 chain 99574 chr8 146364022 + 1674891 1676154 L1PA8 5853 + 4540 5817 36889 112 0 2 333 9 15 564 0 2 39 3 1 70 20 27 35 2 1 19 1 0 19 0 1 37 chain 5169 chr8 146364022 + 1682432 1682493 MER51E 476 + 415 476 193358 61 chain 29131 chr8 146364022 + 1738025 1738375 L1PA5 6144 - 15 369 88404 51 0 4 77 0 1 93 1 0 128 chain 40278 chr8 146364022 + 1749463 1749913 LTR7 482 + 1 482 68905 241 0 31 209 chain 19527 chr8 146364022 + 1751086 1751349 MER4A 717 + 407 666 128577 22 13 9 228 chain 4179 chr8 146364022 + 1768956 1769024 MSTD 398 + 2 68 204833 12 8 6 48 chain 26143 chr8 146364022 + 1784878 1785219 THE1A 353 + 0 340 99430 103 8 7 230 chain 22682 chr8 146364022 + 1819707 1819977 AluSg7 307 + 4 275 117154 122 0 1 148 chain 15196 chr8 146364022 + 1850169 1850381 L1PA8 5853 - 8 216 140782 85 1 0 19 2 1 51 1 0 7 1 0 45 chain 73289 chr8 146364022 + 1935916 1936792 L1PA6 6164 - 15 901 46891 133 8 0 5 0 8 176 0 1 501 2 11 51 chain 24782 chr8 146364022 + 2007863 2008162 AluSp 311 - 12 311 105981 299 chain 7609 chr8 146364022 + 2020261 2020350 AluYc 301 + 182 271 173479 89 chain 3654 chr8 146364022 + 2052045 2052090 MSTB2 466 - 6 52 212716 31 0 1 14 chain 21405 chr8 146364022 + 2052120 2052373 AluY 311 + 10 261 122487 113 1 0 8 1 0 130 chain 184449 chr8 146364022 + 2114443 2116536 L1PA5 6144 - 7 2099 20546 768 0 2 826 9 6 490 chain 41968 chr8 146364022 + 2143974 2144513 MLT2A2 560 - 0 552 66662 85 1 3 59 0 11 221 1 0 125 0 1 47 chain 3076 chr8 146364022 + 2144752 2144787 MLT2B4 540 - 1 36 223421 35 chain 40598 chr8 146364022 + 2154844 2155376 MLT2A2 560 + 0 548 68444 47 0 2 145 1 4 198 6 17 135 chain 17794 chr8 146364022 + 2155690 2155924 THE1B 368 - 123 368 133433 30 0 1 17 4 0 28 1 0 110 0 15 44 chain 82693 chr8 146364022 + 2165279 2166208 L1PA4 6152 - 11 940 42462 137 0 1 709 1 0 82 chain 32706 chr8 146364022 + 2169608 2170237 LTR71B 605 + 0 455 79676 69 1 0 65 14 18 195 191 14 94 chain 7333 chr8 146364022 + 2169953 2170041 LTR71B 605 + 361 449 175203 88 chain 4753 chr8 146364022 + 2170081 2170138 LTR71B 605 + 394 451 197886 57 chain 30029 chr8 146364022 + 2178933 2179249 AluYb8 318 + 0 316 84723 316 chain 3161 chr8 146364022 + 2188236 2188272 MER45A 178 - 51 87 221735 36 chain 17505 chr8 146364022 + 2189961 2190203 L1PA8 5853 + 5614 5853 134250 64 2 1 61 2 1 19 2 1 92 chain 537548 chr8 146364022 + 2248019 2254047 L1PA3long 6157 - 1 6157 3225 5178 0 1 73 0 128 330 7 5 286 1 2 153 chain 542135 chr8 146364022 + 2263735 2269787 L1PA2 6032 - 2 6032 2480 11 2 0 144 0 1 2708 31 8 2059 0 1 546 0 1 186 0 1 108 1 0 256 chain 39242 chr8 146364022 + 2277135 2277668 MLT2A2 560 - 1 551 70398 146 0 11 12 0 1 8 10 11 166 0 1 5 1 4 111 0 2 5 2 0 67 chain 498708 chr8 146364022 + 2282679 2288778 L1PA7 6471 + 3 6147 6915 19 0 1 389 1 2 89 1 0 78 0 2 100 0 1 564 0 6 17 0 19 205 0 3 132 0 1 1001 15 0 756 0 4 10 11 15 26 1 0 18 21 25 17 1 0 1990 1 2 121 4 0 6 0 8 63 0 2 8 1 0 51 0 11 382 chain 28057 chr8 146364022 + 2290509 2290939 L1PA8 5853 - 6 431 92798 16 0 9 62 1 0 16 7 6 38 4 5 4 1 0 12 2 1 49 18 10 10 2 0 47 4 3 137 chain 290526 chr8 146364022 + 2297429 2300658 L1PA3long 6157 - 1 3229 13987 2893 2 1 110 0 1 30 1 0 193 chain 357410 chr8 146364022 + 2324524 2329213 L1PA7 6471 - 1 4394 11419 6 7 0 183 38 41 93 316 0 384 0 11 49 1 0 8 0 2 63 0 6 9 2 0 120 1 2 1361 0 1 4 1 0 630 1 0 11 4 8 35 1 0 26 11 15 10 0 4 747 3 0 564 chain 7902 chr8 146364022 + 2333671 2333833 MSTA 426 - 230 418 171634 48 16 40 8 0 1 28 1 0 4 23 25 34 chain 17627 chr8 146364022 + 2334264 2334506 L1PA8 5853 - 0 239 133913 92 2 1 19 2 1 61 2 1 64 chain 3161 chr8 146364022 + 2336195 2336231 MER45A 178 + 91 127 221734 36 chain 5877 chr8 146364022 + 2386777 2386851 MLT2A2 560 - 484 560 186413 29 0 2 45 chain 22979 chr8 146364022 + 2398066 2398346 AluSp 311 + 5 286 115721 265 0 1 15 chain 33544 chr8 146364022 + 2399624 2400055 MLT2A1 477 + 0 473 78326 140 0 1 28 0 4 151 1 0 61 3 41 47 chain 2915 chr8 146364022 + 2420224 2420257 L1MB1 2102 - 100 133 226777 33 chain 21997 chr8 146364022 + 2433799 2434115 MSTA 426 - 21 426 120242 76 13 27 60 8 6 18 0 77 141 chain 25077 chr8 146364022 + 2441238 2441596 THE1B 368 + 7 368 104425 94 1 0 68 1 0 29 0 3 8 1 5 14 23 21 119 chain 3138 chr8 146364022 + 2446873 2446906 MER31B 477 + 163 196 222220 33 chain 4017 chr8 146364022 + 2494733 2494860 MLT1A1 405 - 74 227 207126 19 18 19 23 40 65 27 chain 10351 chr8 146364022 + 2503793 2503924 THE1D 372 - 1 132 158901 131 chain 58408 chr8 146364022 + 2520668 2521463 L1PA8 5853 - 0 792 53743 93 1 0 19 2 1 49 14 13 68 3 1 13 8 9 23 1 0 333 5 7 163 chain 26980 chr8 146364022 + 2521463 2521819 L1PA8 5853 + 4679 5058 96090 115 7 6 141 3 28 6 0 1 34 2 0 48 chain 59547 chr8 146364022 + 2585193 2586097 LTR12E 1234 + 0 1234 53081 24 14 5 253 4 5 42 0 43 51 1 2 32 1 0 4 1 0 3 5 0 113 0 339 154 0 1 38 80 39 18 0 2 66 chain 13186 chr8 146364022 + 2648722 2648890 THE1D 372 - 3 170 147525 146 2 1 20 chain 113119 chr8 146364022 + 2657413 2658671 L1PA3long 6157 - 0 1260 33344 4 0 1 98 0 1 1156 chain 51957 chr8 146364022 + 2658671 2659261 L1P1 4361 + 2277 2867 57643 590 chain 15845 chr8 146364022 + 2666706 2667011 THE1B 368 - 58 368 138811 6 2 0 60 5 4 10 1 0 11 6 10 8 0 3 29 1 0 31 53 56 82 chain 23913 chr8 146364022 + 2668108 2668462 THE1A 353 - 0 353 110849 93 0 1 91 1 0 4 0 1 38 30 29 48 0 1 34 2 0 13 chain 19723 chr8 146364022 + 2675387 2675768 THE1B 368 + 0 368 128031 105 11 12 60 63 66 27 0 1 67 30 12 18 chain 42503 chr8 146364022 + 2788598 2789335 L1PB1 5432 + 4729 5420 66009 75 2 0 8 1 0 191 14 16 84 6 2 9 9 0 15 6 5 12 1 0 10 6 2 9 2 0 53 2 1 10 6 5 46 1 0 14 3 0 8 44 31 11 2 0 24 1 0 22 1 0 12 1 0 16 chain 4215 chr8 146364022 + 2844393 2844464 MADE1 96 - 5 96 204353 26 12 32 33 chain 234510 chr8 146364022 + 2862865 2865448 L1PA3long 6157 + 3565 6152 17062 274 0 1 1693 0 3 616 chain 20727 chr8 146364022 + 2888748 2888994 L1PA3long 6157 + 5909 6149 124869 233 6 0 7 chain 17511 chr8 146364022 + 2891010 2891287 L1PA8 5853 + 5582 5853 134236 27 3 1 69 1 0 12 10 9 30 16 15 15 2 1 92 chain 17976 chr8 146364022 + 2908489 2908836 L1PA15 4387 + 4033 4365 132923 71 1 0 29 1 0 51 2 1 22 4 0 8 1 0 52 30 29 6 2 0 12 3 1 11 7 3 12 1 4 11 1 0 9 chain 12589 chr8 146364022 + 2921767 2922059 MSTA 426 + 26 392 149882 21 0 18 31 6 42 39 87 86 30 8 29 70 chain 15724 chr8 146364022 + 2928804 2929039 L1PA8 5853 + 5622 5853 139199 60 9 7 51 2 1 18 13 12 82 chain 11598 chr8 146364022 + 2945074 2945239 MER30 238 - 8 190 153900 98 10 27 57 chain 25928 chr8 146364022 + 2947553 2947863 AluY 311 + 0 307 100308 17 2 1 100 2 0 189 chain 23604 chr8 146364022 + 2980011 2980370 THE1A 353 + 5 353 112558 64 6 0 15 0 1 17 17 16 134 12 7 94 chain 6920 chr8 146364022 + 2988799 2988878 L1PA2 6032 + 5953 6032 178030 79 chain 43928 chr8 146364022 + 3010484 3011022 MER41A 554 + 15 554 64298 174 0 1 364 chain 5828 chr8 146364022 + 3049852 3049919 Tigger4b 360 - 68 135 186880 67 chain 30401 chr8 146364022 + 3066094 3066524 MLT2A1 477 + 0 464 83681 158 14 12 11 0 1 20 1 2 181 4 0 6 11 49 24 chain 21389 chr8 146364022 + 3078083 3078337 AluSx4 309 + 11 265 122548 254 chain 29850 chr8 146364022 + 3095518 3095925 LTR7 482 - 5 480 85277 198 2 0 14 9 41 109 8 46 67 chain 294622 chr8 146364022 + 3097222 3100838 HERVH-int 3825 - 0 3823 13722 379 37 38 84 1 2 238 6 9 1699 0 1 267 0 1 328 1 0 61 0 20 9 0 41 17 66 0 10 20 211 48 0 13 15 2 1 172 0 3 156 chain 23632 chr8 146364022 + 3100847 3101233 LTR7 482 - 5 482 112406 109 1 24 38 51 81 110 8 46 69 chain 509164 chr8 146364022 + 3107588 3113531 L1PA4 6152 - 0 6146 6231 6 0 5 10 0 2 659 4 0 1316 0 3 555 0 1 86 1 0 342 0 34 657 0 155 867 0 4 556 0 1 110 0 1 207 0 1 341 0 1 226 chain 481151 chr8 146364022 + 3128453 3133938 L1PA3long 6157 - 1 6151 7687 724 2 1 2138 0 1 33 0 4 2351 0 128 62 0 7 85 0 526 90 chain 16845 chr8 146364022 + 3133949 3134177 THE1B 368 - 136 368 136004 18 0 1 4 4 8 32 1 0 169 chain 15009 chr8 146364022 + 3137149 3137474 THE1D 372 - 34 353 141294 113 1 0 10 89 92 44 4 5 17 15 6 32 chain 255657 chr8 146364022 + 3143357 3146305 L1PA4 6152 - 1 2986 15951 146 4 11 686 0 4 515 0 22 1137 0 4 460 chain 526487 chr8 146364022 + 3146348 3152492 L1PA4 6152 - 1 6150 4548 5 2 0 577 0 1 1080 0 2 442 0 1 430 1 0 1293 0 1 495 0 1 389 1 0 198 1 0 172 0 2 288 0 3 284 20 21 62 0 2 104 4 0 296 chain 97337 chr8 146364022 + 3170642 3171773 L1PA4 6152 + 4991 6143 37471 291 0 4 12 0 4 165 9 1 633 0 21 21 chain 34631 chr8 146364022 + 3196364 3196749 L1PA2 6032 - 7 393 76715 10 0 1 375 chain 9492 chr8 146364022 + 3201844 3201974 L1PA8 5853 + 5718 5846 163112 22 2 1 19 1 0 86 chain 3502 chr8 146364022 + 3214224 3214261 MADE1 96 - 57 94 215329 37 chain 4674 chr8 146364022 + 3223211 3223268 Tigger2b_Pri 1066 + 943 1000 198828 57 chain 219138 chr8 146364022 + 3235709 3238423 L1PA7 6471 + 3746 6470 17937 179 0 1 392 0 2 1108 1 0 41 0 5 27 5 6 106 1 5 667 1 0 12 22 21 152 chain 25846 chr8 146364022 + 3249477 3249779 L1PA4 6152 + 5840 6143 100668 271 0 1 31 chain 37294 chr8 146364022 + 3251077 3251515 L1PA4 6152 + 5706 6146 73085 4 0 1 327 0 1 107 chain 19432 chr8 146364022 + 3268976 3269845 L1PB1 5432 - 130 439 128866 6 1 0 16 2 1 43 1 0 15 2 1 53 2 0 8 6 2 11 1 0 10 1 0 22 1 0 11 551 4 106 chain 521345 chr8 146364022 + 3307851 3313966 L1PA4 6152 - 17 6151 5024 243 11 8 660 1 0 4 7 8 1914 0 3 47 0 1 62 0 2 1474 0 1 976 5 6 585 0 14 126 chain 44165 chr8 146364022 + 3349340 3349912 LTR14C 587 - 0 587 63991 108 8 7 143 9 25 304 chain 23069 chr8 146364022 + 3359630 3359906 AluY 311 + 26 302 115299 276 chain 70226 chr8 146364022 + 3364822 3365645 L1PA5 6144 - 294 1115 48302 480 4 3 80 1 0 258 chain 22609 chr8 146364022 + 3365645 3366038 L1PA5 6144 + 5883 6143 117236 50 133 0 210 chain 38155 chr8 146364022 + 3368438 3368909 L1PA7 6471 + 5996 6469 71902 460 0 2 11 chain 15269 chr8 146364022 + 3405841 3406178 L1PB1 5432 - 12 318 140574 16 1 0 14 2 1 18 2 1 24 2 0 14 1 0 5 2 0 19 49 35 52 2 1 53 2 0 8 5 1 12 1 0 12 1 0 20 chain 3463 chr8 146364022 + 3440210 3440338 MER33 330 + 117 243 215934 6 1 0 8 4 0 18 47 48 16 1 3 27 chain 30908 chr8 146364022 + 3455146 3455509 L1PA7 6471 + 6098 6461 82669 363 chain 22794 chr8 146364022 + 3468508 3468764 L1PA3long 6157 + 5901 6156 116614 233 1 0 22 chain 35639 chr8 146364022 + 3514951 3515368 L1PA7 6471 + 6044 6461 75356 417 chain 18588 chr8 146364022 + 3519932 3520158 L1PA8 5853 - 368 593 131263 129 1 0 96 chain 27785 chr8 146364022 + 3520171 3520526 L1PA8 5853 + 5504 5853 93751 60 1 0 44 2 0 22 0 1 48 1 0 11 1 0 52 1 0 18 1 0 93 chain 22313 chr8 146364022 + 3521564 3521860 L1PA6 6164 - 8 302 118857 103 1 0 77 4 3 111 chain 31366 chr8 146364022 + 3527576 3527991 MLT2A1 477 + 0 412 81879 168 0 4 213 4 0 16 3 0 11 chain 29764 chr8 146364022 + 3534267 3534690 L1PA8 5853 + 5420 5853 85591 83 0 16 45 1 0 46 2 0 72 1 0 7 1 0 50 3 2 16 4 3 20 1 2 71 chain 442217 chr8 146364022 + 3535576 3540718 L1PA5 6144 + 0 6139 8988 89 0 996 810 0 3 76 0 1 86 1 0 1097 1 0 446 1 0 1024 1 0 1244 4 0 122 2 0 5 1 3 29 1 0 89 0 6 13 chain 5053 chr8 146364022 + 3558020 3558093 5S 121 + 7 90 194599 16 5 15 52 chain 2871 chr8 146364022 + 3580391 3580423 Charlie1a 1436 + 461 493 227519 32 chain 12479 chr8 146364022 + 3640024 3640175 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52133 chr8 146364022 + 4133474 4134122 L1PA7 6471 + 5791 6468 57538 294 3 0 223 0 32 128 chain 3166 chr8 146364022 + 4156327 4156361 L1PA6 6164 + 6126 6160 221613 34 chain 32278 chr8 146364022 + 4177880 4178299 L1PA7 6471 - 4 419 80396 6 4 0 17 7 6 276 0 1 109 chain 7097 chr8 146364022 + 4178299 4178395 L1PA7 6471 + 5902 6003 176775 55 3 8 38 chain 20926 chr8 146364022 + 4213562 4214035 L1PB1 5432 - 70 495 124191 16 2 0 14 13 10 14 14 5 7 3 0 16 1 0 35 27 25 53 94 66 164 chain 21131 chr8 146364022 + 4219207 4219490 AluY 311 + 12 286 123442 120 1 2 114 10 0 38 chain 29005 chr8 146364022 + 4222064 4222375 AluYa5 310 + 0 310 88963 132 1 0 178 chain 14340 chr8 146364022 + 4245884 4246199 L1PB1 5432 + 5122 5409 143424 16 4 3 5 1 0 10 5 1 12 2 0 44 0 1 6 2 1 16 1 0 27 1 0 17 1 0 16 3 0 15 6 0 11 7 5 4 1 0 14 2 0 22 3 2 23 1 0 11 1 0 5 chain 37369 chr8 146364022 + 4344696 4345129 L1PA3long 6157 - 0 440 73005 149 0 7 284 chain 49572 chr8 146364022 + 4362002 4362622 L1PA8 5853 - 1 616 59344 4 0 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chain 4836 chr8 146364022 + 4796383 4796690 L1MA8 2339 - 743 1055 196950 31 217 221 35 5 6 19 chain 4371 chr8 146364022 + 4871499 4871546 L1P2 5180 - 5050 5097 202298 47 chain 19044 chr8 146364022 + 4871551 4871809 L1PA6 6164 + 5922 6162 129989 124 18 0 107 0 1 4 1 0 4 chain 22277 chr8 146364022 + 4886537 4886805 AluSc8 310 + 38 309 119009 94 0 3 174 chain 11032 chr8 146364022 + 4896028 4896187 L1PA4 6152 + 5998 6140 156085 96 23 6 40 chain 30558 chr8 146364022 + 4906328 4906646 AluYb8 318 - 0 318 83306 318 chain 27988 chr8 146364022 + 4911423 4911789 THE1B 368 - 0 368 93043 74 1 0 126 1 0 64 0 1 58 0 5 25 2 0 15 chain 29608 chr8 146364022 + 4914965 4915274 AluYb8 318 - 9 318 86183 309 chain 26119 chr8 146364022 + 4941235 4941511 AluYa5 310 + 34 310 99533 276 chain 16771 chr8 146364022 + 4943034 4943215 L1PA4 6152 + 5776 5957 136194 181 chain 104590 chr8 146364022 + 5008840 5010127 L1PA8 5853 - 371 1654 35602 473 2 0 210 15 13 587 chain 541524 chr8 146364022 + 5044551 5050668 L1PA3long 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6157 64072 490 chain 18834 chr8 146364022 + 5403735 5403972 L1PA8 5853 - 543 780 130565 237 chain 40843 chr8 146364022 + 5403976 5404519 L1PA8 5853 + 5318 5853 68109 197 1 0 49 1 0 44 2 0 70 2 1 14 1 0 47 2 1 18 2 1 93 chain 31253 chr8 146364022 + 5414476 5414836 L1PA4 6152 - 9 370 82075 151 0 1 209 chain 9622 chr8 146364022 + 5414836 5414952 L1P1 4361 + 4213 4328 162480 92 1 0 23 chain 27240 chr8 146364022 + 5435219 5435522 AluYa5 310 + 0 300 95464 97 2 0 35 1 0 168 chain 70144 chr8 146364022 + 5448947 5449779 MER11D 897 + 0 853 48329 243 0 1 354 0 23 217 3 0 15 chain 4842 chr8 146364022 + 5479137 5479215 MLT2D 439 + 12 93 196862 51 13 16 14 chain 59864 chr8 146364022 + 5489305 5489984 L1PA3long 6157 + 5477 6157 52889 651 0 1 28 chain 15104 chr8 146364022 + 5497771 5498123 MSTA 426 + 0 402 141016 94 37 68 21 16 35 7 5 0 4 10 0 9 3 0 55 6 0 8 1 26 16 15 14 45 chain 175947 chr8 146364022 + 5564300 5566297 L1PA3long 6157 - 0 2002 21359 15 11 9 124 0 7 1847 chain 132181 chr8 146364022 + 5582261 5583743 SVA_D 2077 + 55 2069 27596 640 0 40 143 0 83 46 0 51 57 3 360 68 1 0 236 0 2 288 chain 159246 chr8 146364022 + 5596117 5598129 L1PA7 6471 - 2 2026 23433 10 3 0 8 1 0 122 10 11 10 0 1 26 9 8 25 0 4 546 0 1 25 1 3 48 1 0 101 0 1 495 2 8 69 3 0 80 6 5 193 0 4 144 1 3 73 chain 53200 chr8 146364022 + 5614662 5615414 LTR12 884 - 15 884 56893 493 2 0 18 0 157 99 3 7 30 41 0 31 10 9 25 chain 43127 chr8 146364022 + 5649884 5650421 MER41A 554 + 0 536 65259 134 2 1 401 chain 33994 chr8 146364022 + 5656048 5656496 LTR22A 463 - 16 463 77625 90 21 21 86 1 0 250 chain 41279 chr8 146364022 + 5679915 5680464 LTR10A 586 - 0 586 67561 32 10 15 256 1 2 40 9 39 24 0 1 177 chain 41296 chr8 146364022 + 5688071 5688642 LTR10A 586 - 12 586 67537 51 0 5 148 0 5 76 7 8 69 9 10 22 0 1 47 11 0 10 5 6 116 chain 26920 chr8 146364022 + 5693672 5693972 L1PA4 6152 + 5846 6146 96556 300 chain 10214 chr8 146364022 + 5731560 5731714 L1PB 1623 + 1217 1373 159544 68 0 1 10 20 21 56 chain 3413 chr8 146364022 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146364022 + 5785961 5786206 L1PA3long 6157 - 3644 3889 121678 245 chain 319315 chr8 146364022 + 5786206 5789807 L1PA3long 6157 + 2522 6142 12624 177 0 13 160 0 2 327 0 1 67 0 4 2123 1 0 746 chain 24136 chr8 146364022 + 5797450 5797817 THE1B 368 - 0 368 109547 56 1 2 5 2 0 65 1 0 8 1 0 16 10 15 27 1 2 5 1 0 85 1 0 82 chain 36861 chr8 146364022 + 5806073 5806497 L1PA4 6152 + 5727 6151 73715 424 chain 28058 chr8 146364022 + 5843362 5843675 AluYa5 310 + 0 309 92794 126 4 0 183 chain 75804 chr8 146364022 + 5844065 5845144 MER11A 1151 - 2 1151 45593 62 1 0 36 0 1 56 1 0 74 0 35 27 1 25 18 0 1 65 1 5 38 3 4 11 6 9 58 0 1 79 0 12 204 35 0 23 0 11 60 0 4 21 1 3 119 0 8 79 chain 110740 chr8 146364022 + 5901716 5903103 LTR12C 1709 - 0 1709 34017 481 0 4 106 3 160 104 0 118 339 16 59 338 chain 3102 chr8 146364022 + 5917932 5917965 L1PA8 5853 + 5820 5853 222888 33 chain 35083 chr8 146364022 + 5932552 5933064 L1PA8 5853 - 0 518 76074 28 9 20 43 1 0 18 8 7 58 1 0 18 0 1 52 2 0 11 0 1 24 17 16 34 1 0 187 chain 11882 chr8 146364022 + 5941625 5941770 L1P1 4361 + 4184 4328 152688 121 1 0 23 chain 534146 chr8 146364022 + 5943305 5949417 L1PA4 6152 - 9 6113 3692 1099 0 1 195 0 1 525 0 2 804 1 0 32 11 12 528 0 2 874 1 0 833 0 1 359 1 3 38 17 0 253 1 0 60 1 2 290 0 1 189 chain 23016 chr8 146364022 + 5959242 5959598 THE1B 368 - 0 368 115549 56 1 2 7 2 0 42 40 53 6 0 1 32 1 0 169 chain 36749 chr8 146364022 + 5964434 5964852 L1PA3long 6157 + 5686 6108 73878 186 0 3 125 0 1 107 chain 4323 chr8 146364022 + 5964854 5964903 L1PA3long 6157 + 6108 6157 202932 49 chain 100713 chr8 146364022 + 5974985 5976269 L1PA8 5853 + 4576 5853 36577 75 11 12 7 1 0 87 0 1 107 0 6 66 1 0 72 2 0 208 1 0 12 1 0 286 1 0 49 1 0 45 2 0 54 1 0 16 1 0 9 1 0 47 7 6 19 1 0 93 chain 4121 chr8 146364022 + 5994675 5994746 L1MA4 2864 + 2740 2809 205637 15 13 11 43 chain 10137 chr8 146364022 + 5998468 5998666 L1PB1 5432 + 5256 5427 159914 25 1 0 14 1 0 4 23 9 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 3 0 5 chain 5550 chr8 146364022 + 6007492 6007564 MER58A 224 + 45 118 189569 4 0 1 68 chain 18992 chr8 146364022 + 6009255 6009568 THE1B 368 + 0 328 130131 47 4 10 116 4 3 22 1 0 4 37 48 78 chain 17910 chr8 146364022 + 6046701 6046984 L1PA8 5853 + 5575 5853 133081 33 2 0 71 39 37 24 2 1 112 chain 530168 chr8 146364022 + 6048602 6054663 L1PA4 6152 + 0 6152 4172 2128 0 1 191 1 0 1196 2 0 401 4 0 954 1 0 411 0 4 12 3 0 409 0 92 93 1 0 244 0 6 10 chain 28768 chr8 146364022 + 6062881 6063186 AluYf4 310 + 0 305 90030 305 chain 22416 chr8 146364022 + 6074397 6074800 MSTB 430 + 30 426 118400 51 2 0 9 4 5 27 1 2 71 94 87 144 chain 23848 chr8 146364022 + 6102141 6102432 AluSp 311 + 8 299 111192 291 chain 11997 chr8 146364022 + 6107762 6107897 MER9a2 513 + 378 513 152215 135 chain 46275 chr8 146364022 + 6112917 6113440 L1PA4 6152 + 5627 6152 61792 239 0 3 26 1 0 257 chain 9681 chr8 146364022 + 6122170 6122293 MER41C 542 + 419 542 162192 123 chain 26366 chr8 146364022 + 6127585 6127887 AluSc 308 + 1 305 98548 171 0 2 131 chain 27217 chr8 146364022 + 6130896 6131202 L1PA5 6144 + 5825 6131 95531 306 chain 3785 chr8 146364022 + 6160768 6160813 MSTB1 431 + 383 429 210593 35 0 1 10 chain 27638 chr8 146364022 + 6187479 6187780 AluYb8 318 - 6 307 94241 301 chain 2607 chr8 146364022 + 6191258 6191455 LTR12B 2670 + 1629 1720 231595 16 3 0 9 146 43 23 chain 29370 chr8 146364022 + 6203457 6203774 AluYb8 318 + 0 318 87202 216 0 1 101 chain 23433 chr8 146364022 + 6214279 6214569 AluSp 311 - 21 311 113460 290 chain 92792 chr8 146364022 + 6220277 6221350 MER11C 1089 + 0 1073 38717 766 5 5 302 chain 23170 chr8 146364022 + 6238273 6238559 AluSp 311 + 11 295 114812 61 2 0 223 chain 362876 chr8 146364022 + 6240075 6244402 L1P2 5180 + 867 5178 11296 60 0 25 481 0 1 594 2 0 787 1 2 317 0 12 37 1 0 498 0 2 108 0 1 672 0 1 199 0 4 28 0 1 368 58 0 25 1 0 46 1 0 38 1 0 4 chain 19156 chr8 146364022 + 6244770 6245003 AluSc8 310 + 71 307 129662 61 0 3 172 chain 50963 chr8 146364022 + 6247399 6248097 LTR12 884 + 0 884 58335 115 0 157 105 2 0 125 1 30 38 23 25 289 chain 30903 chr8 146364022 + 6256925 6257488 LTR8 732 + 39 622 82679 106 7 0 11 11 17 148 0 27 55 41 0 10 1 42 71 66 60 36 chain 4077 chr8 146364022 + 6285846 6285892 Tigger3b 1229 - 1122 1168 206243 46 chain 3865 chr8 146364022 + 6287786 6287834 Charlie1b 519 - 287 335 209378 48 chain 4259 chr8 146364022 + 6289823 6289876 MER2 342 - 157 210 203750 53 chain 96717 chr8 146364022 + 6349006 6350105 L1PA4 6152 - 9 1111 37641 251 1 0 584 0 4 263 chain 8688 chr8 146364022 + 6438738 6438862 MER85 139 + 7 139 167259 89 10 18 25 chain 19850 chr8 146364022 + 6464231 6464555 THE1B 368 + 6 368 127652 35 13 42 84 6 5 26 35 45 125 chain 337839 chr8 146364022 + 6509199 6512974 L1PA4 6152 + 2363 6152 11960 1045 0 1 234 0 4 393 0 1 127 1 0 186 0 4 1783 0 5 6 chain 4921 chr8 146364022 + 6517711 6517935 MLT1D 503 - 118 348 196039 20 72 74 43 71 75 18 chain 21832 chr8 146364022 + 6552908 6553180 AluY 311 + 11 277 120880 19 1 0 96 5 0 151 chain 33511 chr8 146364022 + 6554772 6555246 LTR2 463 + 0 463 78390 61 0 3 48 29 9 33 3 8 198 14 15 88 chain 3244 chr8 146364022 + 6557423 6557479 LTR56 451 + 13 70 220119 16 5 6 35 chain 29232 chr8 146364022 + 6587840 6588150 AluYf4 310 - 0 310 87897 310 chain 3275 chr8 146364022 + 6604590 6604627 L1MB7 1623 + 1381 1418 219442 37 chain 9991 chr8 146364022 + 6639550 6639678 L1PA8 5853 - 17 143 160622 76 1 0 19 2 1 30 chain 18369 chr8 146364022 + 6639722 6639949 L1PA8A 6298 + 5611 5841 131878 55 0 2 143 0 1 29 chain 6683 chr8 146364022 + 6693809 6694096 MER31B 477 - 92 375 179812 16 13 18 41 3 4 11 40 43 24 107 94 32 chain 453119 chr8 146364022 + 6702605 6707756 L1PA4 6152 - 1 6150 8646 5 2 0 107 0 1 58 4 5 83 1 0 1723 1 2 388 1 2 606 0 1 2078 7 1003 87 chain 41989 chr8 146364022 + 6723645 6724213 PABL_A 660 - 0 571 66642 374 6 8 64 7 9 78 2 1 37 chain 64922 chr8 146364022 + 6738137 6738943 L1PA5 6144 - 0 807 50603 138 7 0 9 1 8 221 1 0 64 0 1 5 6 7 354 chain 7940 chr8 146364022 + 6884962 6885059 MER51E 476 - 379 476 171383 97 chain 341701 chr8 146364022 + 6926636 6930731 HERVE-int 4064 + 0 4064 11846 715 0 1 95 3 0 722 31 6 44 1 0 727 0 1 57 0 1 74 1 0 488 1 0 476 2 0 70 1 0 587 chain 82100 chr8 146364022 + 6937465 6938467 LTR5A 1029 + 0 1027 42723 134 0 13 288 1 2 14 0 2 194 0 9 371 chain 12603 chr8 146364022 + 6956755 6956921 L1MA8 2339 - 250 413 149825 80 1 0 55 2 0 28 chain 18926 chr8 146364022 + 6959915 6960161 L1PA8 5853 - 26 267 130304 67 1 0 19 2 1 58 1 0 71 7 5 20 chain 4458 chr8 146364022 + 6973492 6973543 MADE1 96 + 45 96 201252 51 chain 83532 chr8 146364022 + 6984508 6985529 LTR5A 1029 - 0 1029 42104 60 2 4 14 0 6 763 1 0 5 0 2 23 3 2 150 chain 35161 chr8 146364022 + 7005693 7006133 LTR6B 557 - 0 438 75971 337 2 0 101 chain 4303 chr8 146364022 + 7006488 7006551 MER58A 224 - 109 173 203185 20 2 3 41 chain 66885 chr8 146364022 + 7009119 7010183 MER11A 1151 + 0 1143 49689 28 2 0 37 1 100 65 0 4 60 4 0 22 0 4 49 0 3 68 0 1 29 1 3 65 5 6 140 20 21 132 81 46 37 0 1 57 9 10 6 0 1 17 0 7 6 18 11 21 0 2 84 chain 87818 chr8 146364022 + 7012361 7015487 HERVK11-int 2540 - 305 1854 40443 205 13 12 40 0 1 140 1 0 106 27 22 420 21 1 34 12 1 25 1 0 12 17 7 12 42 39 5 1 0 14 10 9 65 2 0 9 1513 70 19 63 24 48 6 5 12 3 0 45 11 0 7 45 35 19 2 0 9 1 0 4 33 22 32 2 1 18 chain 9285 chr8 146364022 + 7020988 7021102 LTR2 463 - 108 222 164140 114 chain 80633 chr8 146364022 + 7041297 7042426 L1PB1 5432 - 661 1815 43329 66 0 2 73 1 2 17 1 5 41 4 6 86 1 0 86 2 3 169 11 13 33 1 0 46 0 1 153 6 7 236 1 6 17 1 9 77 chain 85093 chr8 146364022 + 7043899 7044926 LTR5A 1029 + 0 1029 41484 104 0 1 44 1 0 39 0 1 342 1 0 433 0 2 63 chain 9089 chr8 146364022 + 7047162 7047509 L1MA7 2200 + 1704 2030 165124 15 1 0 42 120 119 66 84 65 19 chain 23538 chr8 146364022 + 7057489 7057777 AluY 311 + 14 302 112915 288 chain 18903 chr8 146364022 + 7068644 7068905 L1PA8 5853 + 5586 5842 130356 22 7 5 69 5 4 54 2 1 19 1 0 82 chain 12393 chr8 146364022 + 7072206 7072366 L1MA8 2339 + 1931 2088 150659 23 2 0 55 1 0 79 chain 105326 chr8 146364022 + 7093038 7094433 LTR12C 1709 + 0 1709 35417 262 4 5 30 0 1 40 18 61 63 1 4 204 0 279 163 9 6 100 1 0 6 11 4 329 2 1 67 1 0 84 chain 83620 chr8 146364022 + 7098175 7099191 LTR5A 1029 - 0 1029 42067 866 0 13 150 chain 341132 chr8 146364022 + 7105495 7109543 HERVE-int 4064 - 0 4053 11864 290 7 1 297 1 0 24 0 1 45 0 10 676 0 6 503 3 0 94 0 1 581 1 2 453 8 7 262 4 1 799 chain 28607 chr8 146364022 + 7110934 7111280 LTR5A 1029 - 504 850 90708 346 chain 12826 chr8 146364022 + 7111281 7111459 LTR5A 1029 - 852 1029 148949 22 1 14 12 14 0 129 chain 86686 chr8 146364022 + 7118050 7119082 LTR5A 1029 - 0 1029 40889 251 6 0 6 6 0 617 5 14 141 chain 86472 chr8 146364022 + 7125672 7126704 LTR5A 1029 - 0 1029 40980 251 6 0 6 6 0 617 5 14 141 chain 86686 chr8 146364022 + 7133294 7134326 LTR5A 1029 - 0 1029 40888 251 6 0 6 6 0 617 5 14 141 chain 86686 chr8 146364022 + 7140916 7141948 LTR5A 1029 - 0 1029 40887 251 6 0 6 6 0 617 5 14 141 chain 86686 chr8 146364022 + 7148538 7149570 LTR5A 1029 - 0 1029 40886 251 6 0 6 6 0 617 5 14 141 chain 88229 chr8 146364022 + 7156168 7157190 LTR5A 1029 - 10 1029 40289 245 2 0 624 1 0 150 chain 164678 chr8 146364022 + 7183503 7185580 L1PA8A 6298 + 3885 5957 22708 216 0 1 515 5 0 746 0 1 120 2 0 24 0 1 63 4 3 382 chain 45283 chr8 146364022 + 7216211 7216807 PRIMA4_LTR 623 + 0 623 62739 169 6 29 63 4 5 20 0 1 104 0 1 43 1 2 186 chain 13789 chr8 146364022 + 7226448 7226779 THE1B 368 - 20 368 145307 55 1 0 26 74 90 61 4 5 16 19 21 26 12 13 22 2 0 13 chain 7443 chr8 146364022 + 7241904 7242001 L1P 111 + 11 109 174490 76 0 2 13 1 0 7 chain 16917 chr8 146364022 + 7243400 7243686 THE1D 372 + 8 307 135804 152 65 78 69 chain 23601 chr8 146364022 + 7256678 7256969 AluY 311 + 7 300 112577 247 10 12 34 chain 38817 chr8 146364022 + 7259811 7260262 LTR7 482 + 0 482 70993 261 0 31 190 chain 269180 chr8 146364022 + 7260264 7263977 HERVH-int 3825 + 0 3816 15224 78 0 1 133 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 41 1 0 20 126 0 3 21 0 9 2 1 49 1 0 452 15 0 210 0 1 239 8 35 129 6 8 581 0 3 308 0 1 4 77 76 7 0 1 17 1 0 5 1 2 118 138 353 263 3 8 216 chain 2124 chr8 146364022 + 7261017 7261044 HERVH-int 3825 + 604 630 237438 15 1 0 11 chain 39385 chr8 146364022 + 7265243 7265696 LTR7 482 + 0 482 70191 52 2 0 214 0 31 185 chain 5074 chr8 146364022 + 7269814 7269886 MADE1 96 + 3 91 194367 42 1 17 29 chain 22269 chr8 146364022 + 7287138 7287432 AluSg7 307 - 4 299 119037 158 13 14 123 chain 11717 chr8 146364022 + 7314322 7314477 L1PA8 5853 - 0 153 153392 93 1 0 19 2 1 40 chain 7634 chr8 146364022 + 7330238 7330350 MER4B 649 - 77 185 173326 44 13 9 55 chain 23809 chr8 146364022 + 7339406 7339686 L1PA5 6144 + 5878 6144 111421 112 14 0 154 chain 48043 chr8 146364022 + 7349117 7349730 PABL_A 660 + 2 660 60450 224 6 7 19 8 52 356 chain 75477 chr8 146364022 + 7355396 7356364 LTR5_Hs 974 - 0 974 45778 103 23 21 16 8 15 164 1 0 187 0 1 177 0 1 289 chain 560649 chr8 146364022 + 7357144 7363877 HERVK-int 6823 - 241 6804 323 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 3498 0 1 181 1 0 7 2 0 372 1 0 439 1 0 313 1 0 18 1 0 26 2 0 204 1 0 306 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 chain 73689 chr8 146364022 + 7363899 7364859 LTR5_Hs 974 - 0 974 46685 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 4567 chr8 146364022 + 7386909 7386966 MER4E1 777 - 83 140 200040 57 chain 85859 chr8 146364022 + 7404919 7405962 LTR5A 1029 + 0 1029 41212 141 5 14 610 30 7 257 chain 86242 chr8 146364022 + 7412574 7413607 LTR5A 1029 + 0 1029 41063 141 5 14 614 13 0 260 chain 86242 chr8 146364022 + 7420224 7421257 LTR5A 1029 + 0 1029 41062 141 5 14 614 13 0 260 chain 86156 chr8 146364022 + 7427870 7428902 LTR5A 1029 + 0 1029 41092 141 5 14 495 0 1 118 13 0 260 chain 86138 chr8 146364022 + 7435519 7436551 LTR5A 1029 + 0 1029 41103 141 5 14 495 0 1 118 13 0 260 chain 41056 chr8 146364022 + 7443164 7443689 LTR5A 1029 + 0 525 67827 129 14 0 12 3 16 27 0 1 340 chain 343468 chr8 146364022 + 7445069 7449122 HERVE-int 4064 + 0 4064 11799 813 4 1 259 8 7 453 1 2 581 0 1 94 3 0 504 0 6 675 0 10 45 0 1 25 1 0 587 chain 84135 chr8 146364022 + 7455421 7456437 LTR5A 1029 + 0 1029 41843 134 0 13 882 chain 107382 chr8 146364022 + 7460154 7461549 LTR12C 1709 - 0 1709 34868 82 1 0 69 2 1 329 11 4 6 1 0 100 4 2 4 1 0 163 0 279 205 0 3 81 0 43 37 1 2 38 1 2 259 chain 18903 chr8 146364022 + 7527229 7527490 L1PA8 5853 + 5586 5842 130355 22 7 5 69 5 4 54 2 1 19 1 0 82 chain 12524 chr8 146364022 + 7530805 7530965 L1MA8 2339 + 1931 2088 150138 23 2 0 55 1 0 79 chain 105326 chr8 146364022 + 7551594 7552989 LTR12C 1709 + 0 1709 35416 262 4 5 30 0 1 40 18 61 63 1 4 204 0 279 163 9 6 100 1 0 6 11 4 329 2 1 67 1 0 84 chain 83751 chr8 146364022 + 7556719 7557735 LTR5A 1029 - 0 1029 42013 866 0 13 150 chain 342306 chr8 146364022 + 7564040 7568082 HERVE-int 4064 - 0 4053 11823 588 1 0 24 0 1 45 0 10 676 0 6 503 3 0 94 0 1 581 1 2 453 8 7 262 4 1 799 chain 41829 chr8 146364022 + 7569473 7569999 LTR5A 1029 - 504 1029 66853 370 1 14 12 14 0 129 chain 86686 chr8 146364022 + 7576589 7577621 LTR5A 1029 - 0 1029 40885 251 6 0 6 6 0 617 5 14 141 chain 85535 chr8 146364022 + 7584237 7585269 LTR5A 1029 - 0 1029 41332 251 5 0 6 7 0 617 14 23 132 chain 85535 chr8 146364022 + 7591885 7592917 LTR5A 1029 - 0 1029 41331 251 5 0 6 7 0 617 14 23 132 chain 85535 chr8 146364022 + 7599532 7600564 LTR5A 1029 - 0 1029 41330 251 5 0 6 7 0 617 14 23 132 chain 85535 chr8 146364022 + 7607180 7608212 LTR5A 1029 - 0 1029 41329 251 5 0 6 7 0 617 14 23 132 chain 85535 chr8 146364022 + 7614828 7615860 LTR5A 1029 - 0 1029 41328 251 5 0 6 7 0 617 14 23 132 chain 85790 chr8 146364022 + 7622476 7623509 LTR5A 1029 - 0 1029 41231 255 13 0 619 20 29 126 chain 85740 chr8 146364022 + 7630124 7631166 LTR5A 1029 - 0 1029 41249 257 22 1 588 1 0 28 12 21 134 chain 4567 chr8 146364022 + 7649117 7649174 MER4E1 777 + 637 694 200039 57 chain 3275 chr8 146364022 + 7654037 7654072 MER2B 336 - 140 175 219444 35 chain 48452 chr8 146364022 + 7676871 7677484 PABL_A 660 - 0 658 60146 364 0 44 19 6 7 224 chain 24418 chr8 146364022 + 7686913 7687179 L1PA5 6144 - 0 266 107978 266 chain 7429 chr8 146364022 + 7696242 7696354 MER4B 649 + 464 572 174583 55 13 9 44 chain 4093 chr8 146364022 + 7711034 7711103 MADE1 96 - 11 96 206034 26 1 0 4 8 25 30 chain 11717 chr8 146364022 + 7712113 7712268 L1PA8 5853 + 5700 5853 153391 40 2 1 19 1 0 93 chain 38888 chr8 146364022 + 7760940 7761393 LTR7 482 - 0 482 70883 186 1 32 212 2 0 52 chain 272091 chr8 146364022 + 7762659 7766373 HERVH-int 3825 - 9 3825 15072 216 3 8 263 139 353 118 1 2 5 1 0 17 0 1 56 28 27 4 0 1 303 0 3 586 6 8 129 8 35 239 0 1 218 15 0 444 1 0 49 2 1 9 21 0 3 126 0 20 1 0 41 1 0 25 3 0 13 5 18 20 1 0 10 1 0 38 5 0 309 0 11 133 0 1 78 chain 2078 chr8 146364022 + 7765543 7765568 HERVH-int 3825 - 3149 3173 204040 20 1 0 4 chain 38180 chr8 146364022 + 7766375 7766826 LTR7 482 - 0 482 71867 203 1 32 247 chain 28633 chr8 146364022 + 7773865 7774171 AluYa5 310 - 5 310 90591 179 1 0 126 chain 44877 chr8 146364022 + 7808601 7809199 PRIMA4_LTR 623 - 0 623 63199 186 1 2 43 0 1 86 1 0 39 9 10 58 6 29 169 chain 165276 chr8 146364022 + 7839837 7841914 L1PA8A 6298 - 341 2413 22618 382 4 3 63 0 1 24 2 0 120 0 1 746 5 0 515 0 1 216 chain 7768 chr8 146364022 + 7845429 7845569 THE1D-int 1627 - 7 151 172493 24 11 9 58 0 1 27 9 14 11 chain 87926 chr8 146364022 + 7868219 7869251 LTR5A 1029 + 0 1029 40400 147 1 0 607 1 0 4 0 1 15 2 0 255 chain 85622 chr8 146364022 + 7875863 7876895 LTR5A 1029 + 0 1029 41295 141 5 14 493 5 6 115 13 0 260 chain 86630 chr8 146364022 + 7883509 7884543 LTR5A 1029 + 0 1029 40911 141 5 14 614 14 0 260 chain 42530 chr8 146364022 + 7891156 7891681 LTR5A 1029 + 0 525 65981 150 1 0 34 0 1 340 chain 344070 chr8 146364022 + 7893061 7897114 HERVE-int 4064 + 0 4064 11781 813 4 1 259 8 7 453 1 2 581 0 1 94 3 0 504 0 6 675 0 10 45 0 1 25 1 0 587 chain 21281 chr8 146364022 + 7900629 7900899 AluSp 311 - 4 297 122925 160 0 24 16 1 0 93 chain 84305 chr8 146364022 + 7903418 7904434 LTR5A 1029 + 0 1029 41784 134 0 13 882 chain 99943 chr8 146364022 + 7908139 7909534 LTR12C 1709 - 0 1709 36795 82 1 0 69 2 1 329 11 4 6 1 0 100 4 2 4 1 0 163 0 279 205 0 3 81 0 43 37 109 111 190 chain 11997 chr8 146364022 + 7930219 7930377 L1MA8 2339 - 251 406 152209 79 1 0 55 2 0 21 chain 18479 chr8 146364022 + 7933652 7933913 L1PA8 5853 - 11 267 131560 82 1 0 19 2 1 50 9 8 72 4 2 22 chain 4375 chr8 146364022 + 7946534 7946585 MADE1 96 + 45 96 202252 51 chain 84654 chr8 146364022 + 7957619 7958646 LTR5A 1029 - 0 1029 41655 63 0 2 433 1 0 342 0 1 38 1 0 47 0 1 102 chain 80803 chr8 146364022 + 7960117 7961246 L1PB1 5432 + 3617 4771 43266 77 1 9 17 1 6 236 6 7 153 0 1 46 1 0 33 11 13 169 2 3 86 1 0 86 4 6 41 1 5 17 1 2 75 0 2 64 chain 9285 chr8 146364022 + 7981423 7981537 LTR2 463 + 241 355 164139 114 chain 82362 chr8 146364022 + 7987031 7990144 HERVK11-int 2540 + 686 2235 42602 18 2 1 32 33 22 4 1 0 9 2 0 19 63 42 45 3 0 12 6 5 46 1594 115 9 2 0 65 10 9 14 1 0 5 42 39 12 17 7 12 1 0 25 12 1 36 21 1 46 0 3 10 3 0 151 0 2 2 2 0 204 27 22 106 1 0 140 0 1 40 28 39 47 17 15 116 chain 35022 chr8 146364022 + 7992508 7992974 MER11A 1151 - 586 1151 76159 21 5 6 94 0 1 149 4 0 60 0 4 65 1 100 37 2 0 28 chain 65115 chr8 146364022 + 7999591 8001688 HERVS71-int 4705 + 2302 4171 50522 10 1 0 10 2 0 9 1 0 10 2 1 19 9 4 12 14 7 16 1 0 8 7 4 11 4 1 7 1 0 6 108 85 35 1 0 53 1 0 18 45 42 17 2 0 10 1 0 29 118 96 6 1 0 7 2 0 9 3 1 19 6 5 6 2 0 28 9 7 10 1 0 9 2 1 13 14 5 19 8 7 16 1 0 4 1 0 7 82 65 4 1 0 14 0 39 8 53 0 39 1 0 18 1 0 4 5 3 14 48 40 11 1 0 13 2 0 6 3 0 21 30 22 29 35 29 16 1 0 17 2 0 57 25 20 6 1 0 29 1 0 32 6 3 51 6 4 17 1 0 34 1 0 13 2 0 5 2 1 12 12 8 5 2 0 5 1 0 29 1 0 6 1 0 5 9 6 24 12 8 20 13 10 33 3 0 23 1 0 17 2 0 6 1 0 24 4 6 10 1 0 60 2 1 9 2 0 17 23 18 46 20 17 12 2 0 20 2 0 7 2 0 22 chain 47232 chr8 146364022 + 8002726 8003278 LTR6B 557 + 0 557 61019 368 0 5 184 chain 417206 chr8 146364022 + 8013472 8018370 L1PA4 6152 + 1 6152 9599 172 0 1 550 0 1 142 0 27 76 2 1 70 0 1213 16 0 1 49 1 0 769 1 0 167 0 3 519 0 1 161 0 1 402 0 1 657 0 2 308 0 1 72 1 0 25 0 3 410 0 3 317 1 0 10 chain 75608 chr8 146364022 + 8026598 8029778 HERVH-int 3825 + 0 3271 14236 333 1 0 126 0 61 15 5 0 35 46 34 14 1 38 26 0 2 13 1 0 14 64 22 22 0 1 22 0 1 57 0 1 4 1 0 774 0 1 439 5 1 36 0 5 305 1 49 820 chain 341140 chr8 146364022 + 8030887 8034966 HERVE-int 4064 + 0 4059 11863 379 1 2 431 1 2 251 0 1 6 1 0 154 0 1 306 26 1 839 0 2 233 0 2 791 3 1 657 chain 40928 chr8 146364022 + 8037609 8038106 LTR2C 499 + 0 499 68000 110 0 1 62 5 8 76 1 0 184 1 0 58 chain 13172 chr8 146364022 + 8038106 8038660 HERVH-int 3825 + 3271 3825 14236 554 chain 19353 chr8 146364022 + 8052333 8052555 AluY 311 + 15 237 129060 222 chain 87385 chr8 146364022 + 8054699 8055725 LTR5A 1029 + 0 1029 40615 150 1 0 393 14 15 222 0 3 246 chain 86852 chr8 146364022 + 8063197 8064221 LTR5A 1029 + 0 1029 40834 13 0 2 77 0 1 57 1 0 406 1 2 72 0 1 248 12 13 137 chain 30101 chr8 146364022 + 8065822 8066225 MER1A 529 + 41 443 84488 39 2 6 6 4 0 300 2 1 50 chain 98841 chr8 146364022 + 8076240 8077629 LTR12C 1709 + 0 1709 37064 14 22 29 295 3 46 28 0 1 5 1 0 45 0 1 4 3 0 22 20 0 171 0 278 132 0 47 97 46 15 311 1 0 86 1 0 82 chain 29248 chr8 146364022 + 8102047 8102444 MER48 407 + 0 407 87797 30 0 1 5 2 1 66 12 0 42 1 21 185 0 2 54 chain 4677 chr8 146364022 + 8102452 8102506 MER57B2 428 - 0 54 198795 54 chain 30584 chr8 146364022 + 8104829 8105279 Charlie3 2679 + 2234 2679 83238 157 1 4 97 2 1 10 6 7 93 26 18 58 chain 26345 chr8 146364022 + 8109776 8110184 MSTA 426 + 0 426 98632 26 1 2 100 1 0 15 9 13 6 4 0 74 18 16 44 1 21 109 chain 19848 chr8 146364022 + 8180686 8181327 THE1C 375 + 0 364 127661 40 0 5 23 0 14 9 10 32 41 351 34 152 1 0 14 chain 3205 chr8 146364022 + 8181333 8181424 MER82 654 + 508 600 220853 20 39 40 32 chain 3362 chr8 146364022 + 8206609 8206646 MADE1 96 - 1 38 217823 37 chain 19957 chr8 146364022 + 8224744 8225001 AluSx1 309 + 52 309 127280 54 0 1 150 9 8 44 chain 24212 chr8 146364022 + 8238091 8238388 AluSc5 308 + 8 305 109144 100 1 2 147 1 0 48 chain 13224 chr8 146364022 + 8250303 8250467 THE1B 368 - 204 368 147374 164 chain 3924 chr8 146364022 + 8285721 8285768 MIRc 230 - 91 138 208501 47 chain 31799 chr8 146364022 + 8288819 8289353 MLT2A1 477 + 6 477 81169 163 4 1 9 0 1 24 0 1 180 117 55 37 chain 2627 chr8 146364022 + 8310569 8310639 MER5B 177 - 75 174 231334 23 26 55 21 chain 28430 chr8 146364022 + 8314276 8314632 L1PA8 5853 - 0 349 91461 93 1 0 19 3 2 51 1 0 9 1 0 70 2 0 45 1 0 60 chain 562585 chr8 146364022 + 8328369 8334397 L1HS 6032 + 0 6029 284 211 1 2 5816 chain 10608 chr8 146364022 + 8347373 8347505 THE1D 372 + 240 372 157792 132 chain 24383 chr8 146364022 + 8371428 8371740 THE1C 375 + 0 312 108183 172 0 1 12 1 0 127 chain 11368 chr8 146364022 + 8378135 8378299 MER30 238 - 0 177 154823 47 3 0 53 0 26 13 10 0 38 chain 32981 chr8 146364022 + 8473884 8474798 MER4B 649 + 0 633 79246 25 5 0 6 19 0 44 2 1 13 1 0 28 44 87 30 329 0 106 0 15 127 8 10 30 0 15 17 9 8 71 chain 24270 chr8 146364022 + 8507813 8508100 AluSx1 309 + 11 298 108851 287 chain 17724 chr8 146364022 + 8525203 8525420 AluY 311 + 83 300 133634 217 chain 5297 chr8 146364022 + 8532251 8532315 LTR8 732 + 668 732 192041 64 chain 15222 chr8 146364022 + 8581294 8581536 L1PA8 5853 + 5609 5847 140711 73 1 0 13 0 6 7 3 0 7 12 8 17 2 1 22 1 0 84 chain 80579 chr8 146364022 + 8620179 8621075 L1PA3long 6157 + 5260 6157 43356 309 1 2 586 chain 6212 chr8 146364022 + 8623021 8623086 MLT1A0 366 - 212 277 183484 65 chain 8545 chr8 146364022 + 8631688 8631811 MER57A1 433 - 305 433 168049 5 0 1 34 9 13 75 chain 105697 chr8 146364022 + 8638220 8639464 LTR12C 1709 - 0 1709 35329 100 4 0 73 4 102 206 0 4 32 0 366 724 0 1 101 chain 9604 chr8 146364022 + 8661064 8661191 MER2 342 + 85 213 162577 24 1 2 102 chain 4281 chr8 146364022 + 8688945 8688997 5S 121 + 38 90 203457 52 chain 17247 chr8 146364022 + 8690397 8690798 MSTA 426 - 9 426 134934 91 8 0 8 100 117 44 51 58 99 chain 28110 chr8 146364022 + 8700493 8700802 AluYb8 318 + 0 305 92606 126 4 0 179 chain 3906 chr8 146364022 + 8712345 8712393 MER53 195 - 124 172 208759 48 chain 24095 chr8 146364022 + 8759590 8759938 THE1B 368 - 0 368 109764 18 3 0 8 0 3 20 0 10 6 3 1 41 1 0 59 2 0 132 11 26 44 chain 124185 chr8 146364022 + 8781124 8783008 THE1A-int 1579 - 7 1579 29634 120 1 2 343 2 0 171 6 7 218 4 0 24 27 28 232 309 0 427 chain 27817 chr8 146364022 + 8783008 8783360 THE1A 353 - 0 353 93642 15 0 1 206 1 2 19 1 0 110 chain 4048 chr8 146364022 + 8797301 8797352 MER5A1 166 + 101 152 206670 51 chain 22178 chr8 146364022 + 8818586 8818913 THE1B 368 - 0 368 119453 78 3 0 79 3 13 22 0 31 90 10 15 26 2 0 14 chain 190520 chr8 146364022 + 8822480 8824597 L1PA4 6152 - 6 2123 19996 266 0 1 696 0 1 344 1 0 203 1 0 606 chain 32709 chr8 146364022 + 8827290 8827873 MER51A 677 - 33 606 79673 105 5 6 197 43 0 5 46 0 42 8 89 22 8 2 22 3 2 9 2 4 31 0 2 35 chain 2424 chr8 146364022 + 8836227 8836265 MER77 626 + 543 580 234005 16 3 2 19 chain 3813 chr8 146364022 + 8852070 8852125 MLT1B 390 + 14 70 210188 11 1 2 43 chain 7774 chr8 146364022 + 8857933 8858038 LTR23 429 + 320 424 172458 17 1 0 87 chain 4389 chr8 146364022 + 8877017 8877072 Tigger9a 622 - 66 121 202098 55 chain 2797 chr8 146364022 + 8912477 8912509 MER39 703 - 215 247 228770 32 chain 5511 chr8 146364022 + 8916074 8916140 U3 216 - 150 216 189927 66 chain 285090 chr8 146364022 + 8918643 8922301 HERVH-int 3825 - 0 3825 14347 487 8 218 39 9 11 359 0 1 160 1 2 130 5 4 5 0 1 305 12 17 306 0 1 207 4 0 102 1 0 40 9 0 10 0 3 638 1 0 50 1 0 5 0 1 10 44 2 14 7 6 35 0 37 15 29 0 20 8 7 7 1 0 21 7 4 4 1 0 6 1 0 50 10 12 140 1 0 333 chain 29636 chr8 146364022 + 8922303 8922705 LTR7 482 - 0 482 86107 158 3 12 4 0 1 16 0 31 35 0 1 109 8 46 69 chain 3995 chr8 146364022 + 8929979 8930024 U7 62 - 15 60 207447 45 chain 9191 chr8 146364022 + 8939236 8939347 LTR9B 643 - 84 198 164601 50 0 3 61 chain 12718 chr8 146364022 + 8944556 8944720 L1PA8 5853 - 0 162 149385 93 1 0 19 2 1 49 chain 12544 chr8 146364022 + 8955370 8955608 L1PB1 5432 + 5059 5281 150065 39 22 16 24 1 0 6 1 0 12 18 12 52 3 2 14 1 0 45 chain 4228 chr8 146364022 + 8971759 8971811 L1MEf 1413 + 1179 1231 204193 52 chain 23961 chr8 146364022 + 8986023 8986296 AluY 311 + 28 302 110558 98 0 1 175 chain 26661 chr8 146364022 + 9006415 9006728 AluY 311 + 0 305 97447 126 5 0 172 3 0 7 chain 131919 chr8 146364022 + 9010936 9012385 SVA_F 1814 - 26 1814 27650 574 0 339 875 chain 14249 chr8 146364022 + 9020350 9020712 THE1B 368 - 0 363 143726 49 14 13 23 12 7 36 131 138 97 chain 19534 chr8 146364022 + 9024155 9024382 AluY 311 + 83 311 128555 49 0 1 178 chain 33514 chr8 146364022 + 9041602 9042045 LTR7 482 - 7 482 78386 167 0 1 11 0 31 37 4 5 108 15 14 101 chain 31811 chr8 146364022 + 9042560 9042989 LTR7B 505 + 0 503 81148 103 3 12 69 6 68 28 0 2 40 0 1 35 1 0 30 0 1 58 0 1 5 1 0 50 chain 21451 chr8 146364022 + 9062662 9062921 AluSp 311 + 11 289 122331 41 0 18 193 0 1 25 chain 42017 chr8 146364022 + 9086449 9086981 MLT2A2 560 - 8 553 66603 22 0 4 11 2 0 100 1 12 396 chain 10784 chr8 146364022 + 9104410 9104553 L1MA4 2864 - 183 323 157053 6 3 0 134 chain 14033 chr8 146364022 + 9106862 9107034 LTR2C 499 + 328 499 144444 11 1 0 160 chain 5872 chr8 146364022 + 9107046 9107109 LTR2C 499 + 436 499 186449 63 chain 5863 chr8 146364022 + 9107121 9107184 LTR2C 499 + 436 499 186555 63 chain 20733 chr8 146364022 + 9109754 9110042 AluY 311 + 0 293 124838 42 0 6 75 2 0 71 10 13 81 2 0 5 chain 58126 chr8 146364022 + 9127189 9128225 MER11B 1079 - 0 1079 53913 22 11 0 26 0 1 150 0 1 53 131 169 62 5 0 8 22 28 12 100 90 68 0 1 54 1 18 86 0 5 225 chain 19404 chr8 146364022 + 9144646 9144870 AluYb8 318 - 0 225 128934 186 0 1 38 chain 7099 chr8 146364022 + 9144994 9145081 U6 107 - 13 100 176757 87 chain 177336 chr8 146364022 + 9146137 9148618 L1PB1 5432 - 5 2444 21220 5 2 0 18 1 0 13 1 0 21 1 0 13 7 0 6 0 5 13 9 6 30 18 5 12 1 0 28 34 32 52 16 10 12 1 0 12 2 1 12 56 26 50 16 16 45 0 1 6 2 1 170 1 9 92 0 2 34 0 4 139 0 4 302 0 1 208 5 2 47 0 1 227 10 13 65 0 1 76 0 1 590 chain 2833 chr8 146364022 + 9166223 9166255 U2 167 + 0 32 228166 32 chain 30515 chr8 146364022 + 9218677 9219052 THE1C 375 + 0 375 83391 174 3 4 172 1 0 25 chain 92693 chr8 146364022 + 9221877 9222915 SVA_D 2077 - 0 1438 38751 12 8 0 620 0 226 141 0 182 257 chain 18031 chr8 146364022 + 9238269 9238662 MER57B2 428 - 0 428 132777 43 47 48 17 20 28 104 63 89 99 chain 148727 chr8 146364022 + 9284263 9285960 L1PA5 6144 - 15 1718 24789 221 6 8 743 1 4 418 0 1 308 chain 21853 chr8 146364022 + 9286090 9286373 AluSc 308 + 10 294 120806 108 1 0 152 5 7 17 chain 537698 chr8 146364022 + 9298820 9304959 L1PA5 6144 - 1 6144 3207 79 4 0 1329 0 1 453 0 2 117 1 2 228 1 2 760 1 0 789 0 4 2377 chain 5764 chr8 146364022 + 9341532 9341657 MER21C 908 + 19 159 187499 30 44 59 51 chain 4539 chr8 146364022 + 9343954 9344010 MER44B 551 + 403 459 200348 56 chain 23832 chr8 146364022 + 9351620 9351915 AluSg7 307 - 14 307 111301 161 2 0 132 chain 3434 chr8 146364022 + 9379462 9379504 MLT1C 463 + 364 406 216502 42 chain 19996 chr8 146364022 + 9386055 9386347 MER4E1 777 + 0 269 127156 24 0 1 153 0 3 60 9 0 7 19 1 20 chain 5682 chr8 146364022 + 9399411 9399484 MLT1A 405 - 303 376 188275 45 1 0 4 0 1 23 chain 26353 chr8 146364022 + 9408069 9408413 THE1C 375 - 30 375 98602 288 3 4 53 chain 23909 chr8 146364022 + 9423089 9423380 AluY 311 + 1 296 110866 45 0 9 72 5 0 169 chain 29867 chr8 146364022 + 9424103 9424417 AluYb8 318 - 4 318 85225 314 chain 24600 chr8 146364022 + 9441396 9441698 AluY 311 + 4 306 106993 128 0 1 148 2 1 24 chain 12708 chr8 146364022 + 9507005 9507361 L1PB1 5432 - 10 327 149428 18 2 1 9 5 4 20 1 0 17 32 27 18 10 1 11 3 0 16 4 3 35 6 5 12 9 8 49 2 0 6 10 6 12 1 0 6 1 0 15 3 0 8 5 0 10 chain 541037 chr8 146364022 + 9512270 9520265 L1PA4 6152 + 0 6151 2663 315 1 5 536 1 0 587 0 4 59 1 0 336 1844 0 1335 1 0 763 0 1 407 0 4 876 1 0 166 3 0 60 2 0 66 4 0 631 chain 131493 chr8 146364022 + 9514126 9515804 SVA_F 1814 - 0 1479 27753 851 0 15 44 0 49 27 263 0 493 chain 4101 chr8 146364022 + 9515048 9515110 SVA_F 1814 - 1106 1167 188219 44 5 4 13 chain 5852 chr8 146364022 + 9515205 9515306 SVA_F 1814 - 726 827 93261 101 chain 29452 chr8 146364022 + 9526646 9526957 AluYb8 318 + 0 311 86832 311 chain 239086 chr8 146364022 + 9593962 9596509 L1HS 6032 - 1053 3604 16824 1837 0 4 710 chain 99697 chr8 146364022 + 9596509 9597578 L1HS 6032 + 4963 6032 36814 1069 chain 30030 chr8 146364022 + 9642267 9642672 LOR1b 457 - 0 416 84722 150 1 5 36 1 9 129 1 0 87 chain 260470 chr8 146364022 + 9658597 9669416 HERVK22-int 3844 + 1 3844 15672 659 3 0 602 0 2 153 0 9 473 6320 0 370 0 1 16 0 1 576 32 4 5 0 3 24 0 1 147 2 1 68 12 10 16 1 0 35 1 0 17 8 6 37 17 12 43 159 119 15 824 236 88 1 0 27 4 3 64 chain 4143 chr8 146364022 + 9661456 9661508 HERVH-int 3825 + 344 396 205339 52 chain 16696 chr8 146364022 + 9664458 9664644 HERVH-int 3825 + 3639 3825 136418 186 chain 14370 chr8 146364022 + 9675543 9675714 L1PA3long 6157 + 5981 6153 143308 19 0 1 152 chain 324695 chr8 146364022 + 9675747 9679787 L1PA7 6471 + 2402 6466 12406 238 0 1 420 0 1 617 1 9 130 12 11 574 0 4 411 6 7 122 2 1 62 4 7 298 7 8 166 0 1 102 7 11 13 1 4 390 0 1 125 0 1 322 3 0 7 chain 508031 chr8 146364022 + 9695879 9702287 L1PA7 6471 + 0 6451 6317 243 0 1 333 3 0 32 2 0 169 3 0 54 0 1 305 0 1 18 1 3 22 4 14 55 0 19 356 1 2 484 0 1 449 9 11 65 1 2 68 0 1 292 4 8 437 2 1 50 1 0 52 0 4 160 1 0 764 0 1 166 0 4 301 0 1 593 1 0 158 0 2 593 5 4 151 chain 99471 chr8 146364022 + 9704604 9705829 LTR12C 1709 - 0 1709 36908 65 0 131 285 11 4 106 8 324 322 0 1 92 0 43 336 chain 19039 chr8 146364022 + 9715012 9715322 L1MA2 4263 - 501 812 130003 97 8 7 4 0 1 14 0 6 46 21 15 32 8 9 80 chain 17320 chr8 146364022 + 9716505 9717103 L1PB1 5432 + 4922 5423 134734 27 1 0 7 3 10 23 185 116 12 3 0 19 1 0 11 1 0 9 20 14 49 3 2 16 1 0 44 1 0 14 26 14 18 24 19 24 1 0 19 16 15 14 1 0 5 chain 19339 chr8 146364022 + 9717227 9717442 L1PA4 6152 - 9 224 129111 215 chain 469529 chr8 146364022 + 9734317 9740210 L1PA7 6471 + 518 6467 8051 604 6 7 194 0 1 276 0 1 187 0 1 263 10 14 12 2 0 562 0 1 455 0 4 140 5 6 26 3 5 21 32 17 297 22 21 366 0 4 416 0 2 431 0 44 59 1 0 340 0 2 70 1 0 251 1 3 79 0 2 11 0 1 258 2 3 19 1 0 143 0 3 327 chain 31691 chr8 146364022 + 9799093 9799465 L1PA5 6144 + 5774 6142 81337 361 4 0 7 chain 21889 chr8 146364022 + 9834318 9834670 THE1B 368 + 6 368 120668 162 2 1 23 41 51 75 9 10 40 chain 329233 chr8 146364022 + 9848804 9852553 L1PA4 6152 + 2410 6141 12229 123 5 8 1270 1 2 354 0 1 868 24 1 1104 chain 6163 chr8 146364022 + 9872198 9872440 MLT1B 390 - 78 326 183850 27 109 113 17 0 1 13 31 32 45 chain 2925 chr8 146364022 + 9873097 9873129 LTR16D 553 + 511 543 226596 32 chain 11109 chr8 146364022 + 9876088 9876225 MLT1A0 366 - 0 137 155775 137 chain 29865 chr8 146364022 + 9883997 9884429 LTR19A 502 - 0 502 85229 55 1 0 8 12 9 117 1 2 69 4 78 126 5 4 34 chain 47236 chr8 146364022 + 9887235 9887789 MER41A 554 + 0 554 61013 554 chain 17834 chr8 146364022 + 9890129 9890435 L1PB3 3668 + 1834 2148 133292 93 24 30 84 9 17 54 1 0 4 20 15 17 chain 15553 chr8 146364022 + 9893249 9893631 THE1A 353 + 0 328 139722 15 2 0 31 20 21 40 26 27 29 0 1 4 102 46 71 0 1 42 chain 4107 chr8 146364022 + 9945430 9945476 MADE1 96 + 0 46 205814 46 chain 9353 chr8 146364022 + 9984718 9984837 MER85 139 + 7 139 163790 56 0 3 23 0 10 40 chain 22040 chr8 146364022 + 9999465 9999758 AluSp 311 - 22 302 120069 7 13 0 273 chain 5165 chr8 146364022 + 10108349 10108413 L1PA3long 6157 + 6093 6157 193403 64 chain 35028 chr8 146364022 + 10140968 10141622 L1PB1 5432 - 8 566 76149 6 1 0 14 1 0 13 5 4 17 1 0 24 2 0 15 7 4 31 13 0 10 1 0 6 4 3 41 1 0 16 1 0 40 0 2 8 3 1 10 5 1 12 1 0 29 5 0 14 62 1 47 4 5 184 chain 26954 chr8 146364022 + 10143738 10144101 THE1B 368 + 0 368 96434 44 0 15 109 1 0 25 4 1 13 6 0 161 chain 7894 chr8 146364022 + 10181659 10181796 MER3 215 + 74 201 171687 29 25 0 27 1 16 55 chain 4975 chr8 146364022 + 10195741 10195802 L1MA7 2200 + 1882 1943 195416 61 chain 5261 chr8 146364022 + 10199764 10199834 Charlie1a 1436 - 32 120 192405 34 0 18 36 chain 28794 chr8 146364022 + 10216091 10216391 AluYa5 310 - 0 300 89927 300 chain 9464 chr8 146364022 + 10246513 10246637 MER85 139 + 2 139 163254 94 1 6 8 0 8 21 chain 3202 chr8 146364022 + 10263772 10263809 MIRc 230 + 68 105 220901 37 chain 12087 chr8 146364022 + 10308987 10309120 L1PA5 6144 + 6002 6135 151844 133 chain 5713 chr8 146364022 + 10333772 10333839 U6 107 + 40 107 187984 67 chain 14056 chr8 146364022 + 10333839 10334030 L1PA8 5853 + 5667 5853 144361 12 1 0 10 2 0 51 2 1 19 1 0 93 chain 30687 chr8 146364022 + 10348498 10348852 L1PA4 6152 - 21 384 83057 16 0 9 338 chain 227231 chr8 146364022 + 10348860 10351500 L1PA4 6152 - 1 2654 17471 44 7 11 787 0 1 286 0 23 586 3 1 131 0 1 127 0 6 10 23 1 283 1 3 352 chain 183411 chr8 146364022 + 10360108 10362139 L1PA4 6152 + 4115 6151 20639 872 0 5 1159 chain 73366 chr8 146364022 + 10365205 10366048 L1PA4 6152 + 5295 6136 46851 305 3 1 535 chain 90918 chr8 146364022 + 10392068 10393414 L1PA15 4387 + 2512 3856 39319 77 43 44 240 1 0 162 0 1 132 2 0 350 74 70 66 14 23 136 6 4 12 4 0 27 chain 56958 chr8 146364022 + 10420063 10420805 MER4E 760 + 0 749 54556 23 0 1 169 6 7 276 7 13 45 1 0 215 chain 314293 chr8 146364022 + 10428993 10433189 HERVH-int 3825 + 0 3825 12836 145 30 1 187 2 1 40 2 1 157 5 0 30 5 1 7 1 0 10 1 0 27 0 31 19 121 0 34 86 2 4 1 0 82 1 0 907 0 5 610 0 1 137 7 10 81 0 1 443 207 41 718 0 3 89 chain 26952 chr8 146364022 + 10434447 10434839 LTR7 482 + 0 482 96441 69 8 46 85 1 11 13 7 8 31 1 32 19 0 10 158 chain 45195 chr8 146364022 + 10441332 10441885 MER41A 554 + 0 554 62831 377 0 1 176 chain 13733 chr8 146364022 + 10472289 10472439 L1PA5 6144 + 5988 6138 145494 150 chain 3471 chr8 146364022 + 10525944 10526001 MLT2C1 407 - 277 334 215805 22 1 0 4 1 2 29 chain 29980 chr8 146364022 + 10569443 10569818 MLT2A1 477 - 94 477 84875 39 0 1 168 0 4 30 0 1 109 0 1 11 7 8 11 chain 4253 chr8 146364022 + 10599097 10599156 L1MCa 1829 + 1642 1697 203842 11 4 0 44 chain 26633 chr8 146364022 + 10631794 10632090 AluSp 311 - 15 311 97542 296 chain 11444 chr8 146364022 + 10650858 10651058 MER30 238 - 0 213 154519 48 3 0 53 3 0 8 31 50 54 chain 20913 chr8 146364022 + 10686572 10686815 AluSg 306 + 57 300 124234 243 chain 555776 chr8 146364022 + 10789935 10795937 L1PA2 6032 - 1 6032 744 640 0 29 5362 chain 24104 chr8 146364022 + 10823897 10824188 AluY 311 + 0 287 109721 48 5 1 238 chain 24851 chr8 146364022 + 10833409 10833699 AluY 311 + 7 296 105616 126 1 0 163 chain 14767 chr8 146364022 + 10842648 10842837 THE1B 368 + 1 189 142040 168 1 0 20 chain 4922 chr8 146364022 + 10899689 10899792 Tigger4a 237 - 0 106 196032 46 29 28 17 0 4 11 chain 8154 chr8 146364022 + 10909370 10909534 L1PA8A 6298 - 7 107 170201 44 64 0 56 chain 47024 chr8 146364022 + 10915756 10916360 L1PA8 5853 + 5266 5853 61185 163 18 5 130 1 0 46 2 0 71 1 0 59 2 1 18 2 1 85 0 2 6 chain 129699 chr8 146364022 + 10975775 10977240 L1PA4 6152 - 2461 3927 28153 5 2 0 1298 0 4 71 1 0 88 chain 204573 chr8 146364022 + 10977247 10979532 L1PA4 6152 + 3689 5978 18880 125 0 1 1541 0 3 619 chain 23867 chr8 146364022 + 10982325 10982627 AluY 311 + 13 311 111097 106 11 7 185 chain 7235 chr8 146364022 + 10999911 11000000 MSTB 430 + 0 89 175858 89 chain 3472 chr8 146364022 + 11005182 11005225 L1ME1 1623 + 1038 1081 215784 43 chain 4437 chr8 146364022 + 11007229 11007280 L1MA4A 3247 + 3055 3106 201495 51 chain 3906 chr8 146364022 + 11026214 11026294 MER61E 571 + 32 112 208767 20 16 19 5 3 0 36 chain 74104 chr8 146364022 + 11098302 11099323 MER11A 1151 + 0 1151 46460 59 0 99 72 1 0 4 3 5 55 4 0 135 14 15 94 0 1 145 6 7 125 14 46 58 0 1 14 12 8 24 1 0 16 0 1 69 0 2 96 chain 8992 chr8 146364022 + 11134443 11134636 MER66B 489 + 262 458 165650 21 0 1 4 1 0 45 70 73 52 chain 28450 chr8 146364022 + 11134688 11135064 THE1C 375 - 0 375 91371 63 0 1 121 4 5 60 3 0 125 chain 135089 chr8 146364022 + 11186832 11188441 SVA_C 1631 + 43 1630 26997 583 0 37 125 0 1 68 59 7 46 1 0 42 1 0 50 1 0 16 1 0 11 5 1 600 chain 4670 chr8 146364022 + 11187608 11187667 SVA_C 1631 + 899 956 150836 11 1 0 45 1 0 1 chain 3873 chr8 146364022 + 11196980 11197025 MER58A 224 + 26 71 209265 45 chain 13507 chr8 146364022 + 11203167 11203365 MER66B 489 - 0 215 146338 119 1 18 10 9 2 30 0 7 29 chain 44096 chr8 146364022 + 11216950 11217447 L1PA4 6152 + 5645 6143 64094 356 0 1 141 chain 7794 chr8 146364022 + 11249933 11250026 U6 107 - 14 107 172331 93 chain 533785 chr8 146364022 + 11259269 11265617 L1PA4 6152 - 11 6152 3730 614 5 0 199 309 0 285 0 1 151 0 5 621 0 3 3201 6 7 4 1 0 80 4 88 741 0 14 127 chain 28055 chr8 146364022 + 11260095 11260396 AluYb8 318 - 18 318 92809 174 1 0 126 chain 34020 chr8 146364022 + 11284022 11284698 MER4A 717 - 0 709 77593 32 0 1 34 2 0 6 105 166 53 23 4 80 10 0 9 10 11 134 29 28 35 1 3 113 chain 76436 chr8 146364022 + 11289771 11290722 L1PA7 6471 + 5500 6468 45240 118 1 4 73 15 16 100 0 2 46 0 3 309 1 0 144 1 10 143 chain 36788 chr8 146364022 + 11337326 11337810 LTR3B_ 500 + 17 500 73812 80 1 0 177 0 1 27 6 6 64 2 1 127 chain 4512 chr8 146364022 + 11338035 11338086 LTR3B_ 500 + 18 69 200654 51 chain 18272 chr8 146364022 + 11368746 11368949 L1PA4 6152 + 5935 6138 132147 203 chain 41050 chr8 146364022 + 11386664 11387332 LTR8 732 - 3 693 67830 186 20 18 80 11 12 85 21 43 83 66 67 116 chain 3357 chr8 146364022 + 11438750 11438789 L1MB3 1562 + 1130 1169 217915 39 chain 32975 chr8 146364022 + 11442493 11442917 L1PA3long 6157 + 5764 6156 79256 24 34 1 225 0 1 141 chain 152001 chr8 146364022 + 11511071 11513275 L1MA3 4352 + 2216 4352 24335 12 0 1 84 1 0 33 1 0 166 51 0 213 1 0 262 10 12 13 0 2 39 7 9 340 0 1 461 0 1 67 0 1 116 24 0 12 1 16 58 0 18 17 22 1 65 4 0 24 2 0 22 11 9 26 1 0 11 6 2 16 0 1 5 chain 24314 chr8 146364022 + 11552636 11552925 AluSp 311 + 4 292 108584 124 1 0 164 chain 16521 chr8 146364022 + 11609792 11610134 THE1B 368 - 0 363 136855 40 16 30 55 11 19 10 0 4 10 1 0 5 23 18 61 40 41 70 chain 6347 chr8 146364022 + 11631903 11631983 THE1B 368 - 204 299 182408 42 0 15 38 chain 18000 chr8 146364022 + 11652739 11652967 LTR12C 1709 + 769 996 132855 68 1 0 159 chain 44463 chr8 146364022 + 11657805 11658348 LTR10C 591 - 41 591 63621 16 6 12 12 0 2 101 1 0 407 chain 486513 chr8 146364022 + 11672381 11678511 L1PA6 6164 - 2 6164 7500 4 1 0 332 1 0 340 1 0 169 2 5 15 2 1 29 0 1 54 0 1 878 1 0 118 0 2 105 1 0 95 1 0 172 0 1 226 0 4 341 0 10 68 5 1 867 0 9 186 0 1 263 0 5 341 5 9 441 1 2 84 0 1 47 0 2 25 7 9 23 0 1 50 0 17 106 3 0 132 3 2 118 20 1 23 39 37 101 0 2 23 15 16 246 chain 11389 chr8 146364022 + 11721039 11721178 MER85 139 - 0 139 154750 50 1 0 39 0 1 49 chain 285370 chr8 146364022 + 11764628 11768030 HERVE-int 4064 - 686 4064 14333 282 0 1 1561 26 1 720 0 1 326 1 0 486 chain 38740 chr8 146364022 + 11769134 11769627 LTR2C 499 - 0 499 71091 64 23 22 227 1 4 67 1 5 110 chain 60046 chr8 146364022 + 11769627 11770341 HERVE-int 4064 - 3350 4064 52800 714 chain 9705 chr8 146364022 + 11770906 11771055 LTR2C 499 - 28 172 162058 85 12 8 39 1 0 12 chain 65175 chr8 146364022 + 11790555 11791351 HERVE-int 4064 - 0 2521 50485 588 1 0 42 0 4 24 9 1731 132 chain 60809 chr8 146364022 + 11791386 11792107 HERVE-int 4064 - 2531 3253 52424 688 0 1 33 chain 70013 chr8 146364022 + 11792111 11792921 HERVE-int 4064 - 3254 4064 48390 810 chain 40469 chr8 146364022 + 11799010 11799509 MER9a3 513 - 9 513 68641 68 0 3 394 0 1 20 1 3 11 1 0 4 chain 22189 chr8 146364022 + 11802694 11802984 AluYc3 301 + 4 286 119408 109 1 2 162 9 0 9 chain 2975 chr8 146364022 + 11819454 11819547 MER58A 224 + 46 150 225541 32 42 53 19 chain 14523 chr8 146364022 + 11847656 11847842 MER75B 242 - 52 242 142817 9 0 1 127 0 3 50 chain 101551 chr8 146364022 + 11879989 11881369 LTR12C 1709 + 0 1709 36386 260 19 33 45 20 63 61 0 3 185 0 278 184 1 0 4 5 3 99 18 10 180 0 4 134 13 12 69 1 0 82 chain 82424 chr8 146364022 + 11885122 11886152 LTR5A 1029 - 0 1029 42574 877 6 5 147 chain 341125 chr8 146364022 + 11895481 11899536 HERVE-int 4064 - 0 4064 11865 382 0 1 205 1 0 70 0 10 193 8 9 984 3 0 675 11 13 16 0 1 34 0 3 638 0 1 18 4 1 254 4 1 555 chain 37363 chr8 146364022 + 11916071 11916541 L1PA5 6144 + 5676 6141 73012 41 0 1 55 2 0 9 0 2 23 1 0 327 5 0 7 chain 24796 chr8 146364022 + 11920133 11920415 AluY 311 + 9 292 105904 123 0 1 159 chain 7774 chr8 146364022 + 11925752 11925872 L1MB1 2102 - 46 162 172455 18 1 0 23 2 0 6 4 2 8 0 1 58 chain 193144 chr8 146364022 + 11937288 11939933 L1PA8 5853 + 2020 5853 19757 254 6 10 372 4 6 87 2 0 5 0 1 115 2 1 58 0 4 63 0 1 245 22 529 99 1 2 49 3 676 407 2 5 76 0 2 274 1 0 108 0 1 94 1 0 46 2 0 69 1 0 22 3 1 18 24 23 17 1 0 33 35 36 24 chain 10087 chr8 146364022 + 11946500 11947055 LTR12D 1347 + 589 1163 160150 69 156 55 39 161 284 13 3 2 31 60 58 23 chain 44877 chr8 146364022 + 11969355 11969953 PRIMA4_LTR 623 - 0 623 63198 186 1 2 43 0 1 90 1 0 35 9 10 58 6 29 169 chain 182769 chr8 146364022 + 12000004 12002376 L1PA8A 6298 - 53 2413 20705 59 0 1 88 25 15 35 0 1 471 4 3 63 0 1 24 2 0 120 0 1 746 5 0 429 0 1 85 0 1 216 chain 90058 chr8 146364022 + 12028634 12029655 LTR5A 1029 + 0 1029 39630 150 1 0 630 0 3 96 0 6 144 chain 5323 chr8 146364022 + 12055654 12055781 MLT1C 463 + 53 167 191792 57 49 36 21 chain 14754 chr8 146364022 + 12060580 12060808 LTR12C 1709 - 672 940 142087 17 2 43 23 27 27 90 1 0 68 chain 30085 chr8 146364022 + 12071966 12072365 MER1A 529 - 86 484 84541 50 2 1 300 4 0 6 2 6 35 chain 87009 chr8 146364022 + 12073969 12074993 LTR5A 1029 - 0 1029 40777 137 12 13 248 0 1 72 0 1 407 1 0 53 6 7 76 0 2 12 chain 89428 chr8 146364022 + 12082470 12083497 LTR5A 1029 - 0 1029 39832 246 0 3 630 1 0 150 chain 339581 chr8 146364022 + 12142046 12146101 HERVE-int 4064 - 0 4064 11911 382 0 1 205 1 0 70 0 10 193 8 9 984 3 0 675 11 13 16 0 1 34 0 3 633 2 3 21 4 1 254 4 1 555 chain 37136 chr8 146364022 + 12162635 12163104 L1PA5 6144 + 5676 6141 73326 41 0 1 55 2 0 9 0 2 23 1 0 293 0 1 33 5 0 7 chain 24890 chr8 146364022 + 12166706 12166988 AluY 311 + 9 292 105406 123 0 1 159 chain 7774 chr8 146364022 + 12172322 12172442 L1MB1 2102 - 46 162 172454 18 1 0 23 2 0 6 4 2 8 0 1 58 chain 194651 chr8 146364022 + 12183534 12186178 L1PA8 5853 + 2020 5853 19611 254 6 10 63 0 1 308 4 6 87 2 0 5 0 1 115 2 1 58 0 4 63 0 1 245 22 529 99 1 2 49 3 676 408 1 4 76 0 2 274 1 0 107 0 1 95 1 0 46 2 0 69 1 0 22 3 1 21 21 20 17 1 0 33 12 13 47 chain 44795 chr8 146364022 + 12215599 12216192 PRIMA4_LTR 623 - 0 623 63299 20 0 5 161 1 2 43 0 1 86 1 0 39 9 10 55 0 23 178 chain 30345 chr8 146364022 + 12238732 12239049 AluYb8 318 + 0 317 83784 317 chain 182730 chr8 146364022 + 12242275 12244691 L1PA8A 6298 - 8 2413 20713 40 8 9 55 0 1 88 19 9 5 0 1 506 5 4 59 5 6 23 2 0 120 0 1 746 5 0 515 0 1 174 0 1 4 1 0 16 1 2 19 chain 90375 chr8 146364022 + 12270953 12271974 LTR5A 1029 + 0 1029 39513 150 1 0 630 0 3 96 0 6 144 chain 5323 chr8 146364022 + 12297919 12298046 MLT1C 463 + 53 167 191791 57 49 36 21 chain 14754 chr8 146364022 + 12302854 12303082 LTR12C 1709 - 672 940 142086 17 2 43 23 27 27 90 1 0 68 chain 30234 chr8 146364022 + 12314489 12314892 MER1A 529 - 86 488 84102 50 2 1 300 4 0 6 2 6 39 chain 88098 chr8 146364022 + 12316491 12317515 LTR5A 1029 - 0 1029 40334 137 12 13 248 0 1 72 0 1 407 1 0 57 0 1 78 0 2 12 chain 89166 chr8 146364022 + 12324980 12326007 LTR5A 1029 - 0 1029 39943 246 0 3 630 1 0 150 chain 13074 chr8 146364022 + 12342033 12342583 HERVH-int 3825 - 0 550 14234 550 chain 41190 chr8 146364022 + 12342587 12343084 LTR2C 499 - 0 499 67656 64 1 0 182 1 0 72 5 8 62 0 1 110 chain 340660 chr8 146364022 + 12345727 12349806 HERVE-int 4064 - 5 4064 11884 657 3 1 791 0 2 233 0 2 839 26 1 306 0 1 154 1 0 6 0 1 251 1 2 431 1 2 379 chain 75761 chr8 146364022 + 12350911 12354098 HERVH-int 3825 - 550 3825 14234 824 1 49 305 0 5 36 5 1 443 0 1 832 1 0 22 0 1 23 94 12 24 1 0 25 35 102 25 0 56 125 1 0 29 1 0 335 chain 1395 chr8 146364022 + 12353446 12353481 HERVH-int 3825 - 3134 3169 213866 35 chain 417134 chr8 146364022 + 12362313 12367211 L1PA4 6152 - 0 6151 9600 10 1 0 322 0 3 407 0 3 17 1 0 81 0 1 306 0 2 656 0 1 402 0 1 161 0 1 519 0 3 169 1 0 767 1 0 49 0 1 13 0 1213 73 2 1 76 0 27 144 0 1 548 0 1 172 chain 2876 chr8 146364022 + 12371653 12371686 MLT1I 406 + 367 400 227418 33 chain 28825 chr8 146364022 + 12375452 12375862 MER4A1 472 + 35 449 89783 65 5 7 119 24 26 197 chain 47101 chr8 146364022 + 12377416 12377968 LTR6B 557 - 0 557 61126 189 0 5 363 chain 64899 chr8 146364022 + 12379006 12381103 HERVS71-int 4705 - 534 2403 50611 22 2 0 7 2 0 20 2 0 12 20 17 46 23 18 15 2 0 11 2 1 60 1 0 10 4 6 24 1 0 6 2 0 17 1 0 23 3 0 33 13 10 20 12 8 24 9 6 5 1 0 6 1 0 29 1 0 5 2 0 5 12 8 12 2 1 5 2 0 13 1 0 35 1 0 18 4 2 51 6 3 29 9 8 24 1 0 6 25 20 57 2 0 17 1 0 16 35 29 29 30 22 21 3 0 6 3 1 12 1 0 6 3 0 8 7 6 10 2 1 14 9 6 14 5 3 4 1 0 18 1 0 41 0 3 5 54 37 14 1 0 4 82 65 10 3 1 16 8 7 19 14 5 13 2 1 9 1 0 10 9 7 28 2 0 6 6 5 19 3 1 9 2 0 7 1 0 6 76 61 15 1 0 11 15 9 29 1 0 10 2 0 17 45 42 18 1 0 53 1 0 35 108 85 6 1 0 7 4 1 11 7 4 8 1 0 16 14 7 12 9 4 19 2 1 10 1 0 10 2 0 9 1 0 10 chain 34799 chr8 146364022 + 12387739 12388205 MER11A 1151 + 0 565 76479 28 2 0 37 1 100 65 0 4 60 4 0 146 0 1 97 5 6 21 chain 76626 chr8 146364022 + 12390570 12391794 HERVK11-int 2540 - 305 1484 45151 116 17 15 47 28 39 40 0 1 140 1 0 106 27 22 420 21 1 34 12 1 25 1 0 12 17 7 12 42 39 5 1 0 14 10 9 65 2 0 9 chain 7559 chr8 146364022 + 12399175 12399295 LTR2 463 - 117 222 173812 49 21 6 50 chain 24045 chr8 146364022 + 12403166 12403450 AluSc5 308 + 0 283 110080 131 1 0 152 chain 80084 chr8 146364022 + 12420880 12422010 L1PB1 5432 - 661 1815 43548 142 0 1 17 1 5 19 0 1 17 8 10 172 2 3 169 8 10 36 1 0 46 0 1 153 8 7 33 14 15 188 1 6 17 1 9 77 chain 23567 chr8 146364022 + 12422643 12423046 HERVK-int 6823 + 5173 5578 112766 99 31 34 152 38 38 4 0 1 13 1 0 9 5 4 51 chain 85205 chr8 146364022 + 12423488 12424512 LTR5A 1029 + 0 1029 41450 150 1 0 338 1 3 274 0 2 197 0 2 63 chain 23891 chr8 146364022 + 12437033 12437329 AluY 311 + 11 307 110949 296 chain 19077 chr8 146364022 + 12448140 12448401 L1PA8 5853 + 5586 5842 129885 22 4 2 72 5 4 54 2 1 19 1 0 82 chain 12524 chr8 146364022 + 12451640 12451800 L1MA8 2339 + 1931 2088 150137 23 2 0 55 1 0 79 chain 79691 chr8 146364022 + 12478998 12480129 L1PB1 5432 - 661 1815 43739 120 22 23 17 1 5 41 4 6 172 2 3 154 23 25 35 1 0 47 0 1 396 1 6 17 1 9 77 chain 81727 chr8 146364022 + 12481600 12482613 LTR5A 1029 + 0 1029 42879 138 1 14 36 0 2 334 8 7 433 0 2 63 chain 19807 chr8 146364022 + 12506297 12506575 L1PA8 5853 + 5586 5852 127791 20 7 5 71 1 0 58 2 1 19 1 0 85 7 0 7 chain 12045 chr8 146364022 + 12509560 12509721 L1MA8 2339 + 1931 2089 152006 23 2 0 55 1 0 80 chain 30376 chr8 146364022 + 12528714 12529030 AluYb8 318 - 2 318 83722 316 chain 104947 chr8 146364022 + 12530780 12532176 LTR12C 1709 + 0 1709 35513 262 29 30 5 0 1 40 10 53 71 0 3 194 0 278 175 1 0 4 4 2 100 1 0 6 11 4 330 1 0 69 1 0 82 chain 78386 chr8 146364022 + 12535916 12536942 LTR5A 1029 - 0 1029 44331 173 0 1 72 24 27 604 6 5 147 chain 344340 chr8 146364022 + 12545899 12549944 HERVE-int 4064 - 0 4064 11776 382 0 1 205 1 0 70 0 10 618 1 3 565 3 0 239 0 14 422 10 11 685 2 0 28 4 1 810 chain 343255 chr8 146364022 + 12565565 12569614 HERVE-int 4064 - 0 4064 11805 588 1 0 71 2 0 805 0 42 169 1 2 18 0 1 19 0 1 814 26 1 433 0 1 288 4 1 775 1 2 6 1 0 27 chain 16937 chr8 146364022 + 12594827 12595150 MER2 342 + 6 342 135757 27 61 77 97 0 1 50 6 0 29 13 14 28 1 2 11 chain 5629 chr8 146364022 + 12617952 12618254 MLT1A0 366 + 30 334 188780 17 52 52 47 1 0 8 147 150 30 chain 9316 chr8 146364022 + 12620742 12620992 MLT1A0 366 - 28 279 163985 81 117 118 52 chain 108191 chr8 146364022 + 12653656 12654976 LTR12C 1709 + 0 1709 34652 68 0 34 266 1 33 393 8 324 99 15 19 65 0 1 68 0 2 337 chain 11494 chr8 146364022 + 12665178 12665301 L1PA3long 6157 - 15 138 154320 123 chain 182306 chr8 146364022 + 12665301 12667303 L1PA3long 6157 + 4016 6022 20759 1290 0 1 563 1 4 148 chain 16252 chr8 146364022 + 12691394 12691621 L1PA16 3655 - 132 362 137608 35 13 15 64 0 1 115 chain 2929 chr8 146364022 + 12701252 12701283 MER20 218 - 5 36 226524 31 chain 8929 chr8 146364022 + 12710288 12710415 L1MB5 1630 + 1336 1464 165984 38 1 3 15 1 0 72 chain 47199 chr8 146364022 + 12712022 12712774 LTR12 884 - 15 884 61046 144 11 45 44 57 62 34 7 9 50 48 37 44 0 22 17 0 66 273 1 0 22 chain 10335 chr8 146364022 + 12720691 12720819 L1PA7 6471 + 6336 6466 158961 120 0 2 8 chain 3612 chr8 146364022 + 12724766 12724814 L1PB1 5432 + 5358 5404 213453 12 1 0 22 1 0 12 chain 16353 chr8 146364022 + 12735005 12735383 L1PA11 4918 + 4243 4578 137329 85 4 0 50 12 16 13 2 1 67 105 66 13 1 0 13 2 0 11 chain 26056 chr8 146364022 + 12757252 12757554 AluSp 311 - 1 303 99803 28 2 0 54 0 2 218 chain 180093 chr8 146364022 + 12761077 12763328 L1PA8 5853 - 0 2270 20982 90 4 3 19 2 1 61 2 1 70 2 0 19 1 2 23 1 0 238 0 1 178 0 11 37 26 29 61 0 2 210 0 1 22 0 1 429 0 5 686 1 0 30 0 1 39 chain 3756 chr8 146364022 + 12763344 12763433 MADE1 96 - 0 96 211020 31 35 42 23 chain 4467 chr8 146364022 + 12779444 12779705 MLT1E3 631 - 267 558 201156 22 190 220 49 chain 38050 chr8 146364022 + 12788910 12789365 LTR12E 1234 - 776 1234 72058 305 1 4 149 chain 5470 chr8 146364022 + 12797491 12797559 L1MA8 2339 - 259 327 190300 68 chain 62850 chr8 146364022 + 12798287 12799024 L1PA5 6144 + 5397 6132 51511 414 2 1 314 1 0 6 chain 31317 chr8 146364022 + 12816238 12816603 L1PA6 6164 + 5788 6156 81960 5 0 2 213 0 1 147 chain 10715 chr8 146364022 + 12840508 12840672 Tigger4 2445 + 186 349 157350 32 6 4 11 8 7 92 0 2 15 chain 3094 chr8 146364022 + 12844656 12844691 MIR 256 + 41 76 223025 35 chain 27397 chr8 146364022 + 12845949 12846300 THE1C 375 - 25 375 94981 100 4 3 60 12 12 175 chain 10384 chr8 146364022 + 12883772 12883887 L1PA4 6152 + 5877 5992 158767 115 chain 25517 chr8 146364022 + 12898265 12898614 THE1C 375 - 25 375 102153 152 21 18 41 0 4 135 chain 9279 chr8 146364022 + 12901858 12901965 U6 107 + 0 107 164170 107 chain 21024 chr8 146364022 + 12920234 12920567 THE1C 375 + 8 364 123836 23 0 3 5 3 0 7 5 0 35 1 36 50 0 1 11 0 2 5 21 13 59 1 0 92 1 0 14 chain 36240 chr8 146364022 + 12923845 12924502 L1PB1 5432 + 4786 5423 74568 178 0 1 87 1 0 51 13 11 24 50 30 52 2 1 15 1 0 26 0 2 11 34 22 29 12 9 11 2 0 24 1 0 10 3 24 13 1 0 6 chain 2422 chr8 146364022 + 12928161 12928199 MLT1C 463 - 154 193 234032 11 3 4 24 chain 22609 chr8 146364022 + 13000286 13000567 AluSp 311 + 10 297 117545 194 4 10 83 chain 19525 chr8 146364022 + 13011128 13011663 LTR12C 1709 - 641 940 128583 31 158 0 118 9 10 56 46 9 7 1 0 35 41 0 33 chain 1951 chr8 146364022 + 13011159 13011236 LTR12C 1709 - 754 790 185652 1 41 0 35 chain 2067 chr8 146364022 + 13011500 13011546 LTR12C 1709 - 737 783 141837 46 chain 8245 chr8 146364022 + 13017686 13017785 HY3 101 + 0 99 169709 99 chain 455592 chr8 146364022 + 13038849 13044570 L1PA6 6164 - 2 5417 8554 11 1 0 831 7 5 37 0 19 594 0 2 294 0 4 744 0 1 430 0 1 27 0 17 372 0 1 369 0 4 65 11 0 15 2 3 115 341 0 247 1 0 225 2 1 7 0 1 257 9 0 10 9 18 688 chain 9012 chr8 146364022 + 13063026 13063242 MER30 238 - 9 238 165530 30 3 0 71 4 0 6 80 100 22 chain 23272 chr8 146364022 + 13075071 13075372 AluY 311 + 10 301 114334 123 3 0 159 7 0 9 chain 42739 chr8 146364022 + 13113855 13114391 L1PA8 5853 + 5319 5847 65734 184 2 0 59 1 0 46 2 0 70 2 1 11 1 0 4 0 1 45 5 4 16 1 0 87 chain 29960 chr8 146364022 + 13232835 13233188 L1P1 4361 - 36 387 84933 20 1 0 155 1 0 176 chain 9504 chr8 146364022 + 13237159 13237297 L1PA8 5853 - 0 136 163047 93 1 0 19 8 7 17 chain 13418 chr8 146364022 + 13237308 13237481 L1PA8 5853 + 5498 5668 146639 64 1 0 46 2 0 60 chain 29232 chr8 146364022 + 13239734 13240044 AluYf4 310 + 0 310 87896 310 chain 25598 chr8 146364022 + 13247772 13248100 L1PA8A 6298 - 252 571 101740 153 11 2 164 chain 6501 chr8 146364022 + 13248102 13248203 L1PA8 5853 + 5748 5844 181228 11 7 6 31 4 0 48 chain 25436 chr8 146364022 + 13270166 13270463 AluY 311 + 6 305 102517 78 0 1 47 0 1 172 chain 16442 chr8 146364022 + 13270673 13270889 MER30 238 + 1 238 137090 15 0 18 73 4 10 73 3 0 48 chain 268524 chr8 146364022 + 13274722 13277737 L1PA3long 6157 - 2 3016 15260 257 1 0 428 3 0 722 0 1 802 0 1 114 0 1 688 chain 26934 chr8 146364022 + 13277921 13278297 L1PA8 5853 - 7 380 96504 23 0 1 62 1 0 18 1 0 41 10 7 17 1 0 24 4 9 36 2 0 44 1 0 91 chain 24685 chr8 146364022 + 13298121 13298462 THE1A 353 + 0 344 106521 63 5 9 33 6 5 234 chain 196265 chr8 146364022 + 13298633 13300855 L1PA4 6152 + 3904 6134 19482 734 0 5 145 0 1 705 0 1 551 1 2 86 chain 19528 chr8 146364022 + 13301707 13301968 L1PA6 6164 + 5903 6162 128573 98 15 16 132 3 0 13 chain 24518 chr8 146364022 + 13307050 13307336 L1PA5 6144 + 5855 6141 107453 286 chain 17607 chr8 146364022 + 13309172 13309483 L1MA2 4263 - 149 448 133973 10 1 0 6 1 4 25 3 0 11 7 0 93 13 11 11 14 19 8 7 0 101 chain 16499 chr8 146364022 + 13330730 13330953 THE1B 368 + 0 235 136924 39 0 15 118 2 0 4 0 1 21 3 1 36 chain 105432 chr8 146364022 + 13330977 13332466 THE1B-int 1605 + 0 1514 35391 35 1 3 312 0 2 80 28 53 305 2 8 307 75 79 24 28 14 292 chain 13214 chr8 146364022 + 13376506 13376655 L1PA5 6144 - 4 153 147412 149 chain 68707 chr8 146364022 + 13377276 13378138 L1PA7 6471 + 5601 6467 48941 13 0 3 69 3 4 15 1 0 602 1 2 158 chain 29478 chr8 146364022 + 13384086 13384429 L1PA5 6144 + 5789 6132 86719 343 chain 5530 chr8 146364022 + 13393537 13393617 5S 121 + 0 90 189749 25 5 15 50 chain 3194 chr8 146364022 + 13399490 13399539 L1ME1 1623 - 701 750 221032 31 2 1 5 0 1 11 chain 7595 chr8 146364022 + 13400903 13400995 L1PB3 3668 - 285 377 173578 92 chain 10611 chr8 146364022 + 13401003 13401242 L1PB3 3668 + 3385 3562 157769 6 1 0 87 85 26 24 3 1 33 chain 38822 chr8 146364022 + 13427803 13428226 L1PA2 6032 - 0 423 70986 423 chain 5193 chr8 146364022 + 13438291 13438598 LTR52 417 - 77 417 193114 29 173 201 16 41 44 42 0 2 6 chain 3703 chr8 146364022 + 13440344 13440387 Tigger1 2417 - 91 134 211901 43 chain 26693 chr8 146364022 + 13464437 13465209 L1PA8 5853 - 0 775 52267 92 2 1 13 8 7 50 1 0 8 5 4 15 0 1 54 2 0 44 1 0 115 8 16 280 14 15 60 chain 80125 chr8 146364022 + 13465211 13466144 LTR13A 966 + 0 966 43536 76 0 4 56 0 30 58 1 0 195 0 1 351 1 0 195 chain 2144 chr8 146364022 + 13466144 13466206 L1PA8 5853 - 775 837 52267 62 chain 26663 chr8 146364022 + 13472691 13472974 AluYb8 318 + 35 318 97443 283 chain 13454 chr8 146364022 + 13476536 13476700 L1PA6 6164 - 5 168 146510 8 1 0 155 chain 15217 chr8 146364022 + 13490695 13490966 THE1D 372 + 79 372 140726 73 74 96 124 chain 3706 chr8 146364022 + 13496085 13496175 MLT1J2 417 - 246 331 211873 12 20 14 21 5 6 32 chain 73103 chr8 146364022 + 13501312 13502123 L1PA3long 6157 - 1950 2762 46849 116 0 1 695 chain 164653 chr8 146364022 + 13502123 13503954 L1PA3long 6157 + 4324 6157 22715 211 0 1 686 0 1 934 chain 43749 chr8 146364022 + 13506076 13506561 L1PA3long 6157 + 5672 6157 64507 485 chain 18331 chr8 146364022 + 13507455 13507658 L1PA5 6144 - 506 709 131982 203 chain 44298 chr8 146364022 + 13507667 13508169 L1PA5 6144 + 5630 6132 63824 502 chain 64605 chr8 146364022 + 13533497 13534475 MER11A 1151 - 0 1151 50745 36 0 4 36 5 9 82 0 1 16 1 0 30 4 5 11 0 1 37 17 48 84 12 21 40 5 6 63 14 15 29 0 3 30 0 7 93 8 9 141 4 0 16 0 4 40 0 4 45 1 108 12 1 0 65 chain 85966 chr8 146364022 + 13555589 13556651 MER11C 1089 - 16 1089 41167 335 0 1 45 0 4 109 15 16 242 0 4 67 8 9 241 chain 44555 chr8 146364022 + 13578907 13579498 L1PA8 5853 - 0 584 63516 92 2 1 17 2 1 54 2 1 8 2 1 10 1 0 4 1 2 54 2 0 48 1 0 291 chain 12037 chr8 146364022 + 13594498 13594628 AluYb8 318 - 185 318 152044 7 0 3 123 chain 73122 chr8 146364022 + 13624822 13625691 MER11D 897 - 0 897 46967 122 1 0 49 0 6 126 4 27 567 chain 43077 chr8 146364022 + 13633279 13633795 MER9a1 513 - 0 513 65324 171 3 0 342 chain 14120 chr8 146364022 + 13652201 13652460 THE1D 372 + 94 372 144137 29 5 9 34 57 72 134 chain 3711 chr8 146364022 + 13656536 13656575 MER3 215 - 104 143 211775 39 chain 24422 chr8 146364022 + 13663829 13664150 L1PA7 6471 + 6147 6467 107958 166 1 3 93 0 1 51 4 0 6 chain 20864 chr8 146364022 + 13703726 13704041 THE1B 368 + 0 328 124415 172 1 0 26 35 45 63 1 5 17 chain 21347 chr8 146364022 + 13768341 13768604 L1PA7 6471 - 1 264 122700 263 chain 56174 chr8 146364022 + 13775581 13776206 L1PA3long 6157 + 5511 6157 55028 327 0 21 298 chain 16292 chr8 146364022 + 13794219 13794400 L1PA2 6032 - 0 180 137498 164 1 0 16 chain 22356 chr8 146364022 + 13796213 13796456 L1PA3long 6157 + 5914 6157 118682 243 chain 19336 chr8 146364022 + 13809485 13809735 THE1B-int 1605 - 8 256 129125 110 0 2 80 4 0 56 chain 22506 chr8 146364022 + 13835794 13836130 THE1B 368 - 12 368 118006 21 0 2 5 14 22 97 9 11 30 1 0 92 6 0 17 0 15 44 chain 85122 chr8 146364022 + 13842134 13843097 L1PA4 6152 - 12 976 41473 845 1 2 117 chain 11975 chr8 146364022 + 13852026 13852171 L1PA7 6471 - 10 155 152305 145 chain 83103 chr8 146364022 + 13855787 13856971 Charlie3 2679 - 0 1200 42289 64 20 18 28 16 19 5 0 2 76 25 24 36 11 29 93 4 1 144 10 7 125 1 0 430 0 3 96 chain 100050 chr8 146364022 + 13860973 13862268 L1PA7 6471 + 5172 6469 36761 200 0 1 105 4 3 137 1 0 81 4 5 7 1 0 98 0 3 4 0 1 320 3 1 159 23 24 148 chain 78696 chr8 146364022 + 13885131 13886093 LTR13A 966 - 0 966 44192 11 0 1 4 1 0 132 8 11 106 0 1 30 2 0 251 0 2 417 chain 83398 chr8 146364022 + 13902213 13903184 L1PA5 6144 + 5169 6140 42160 971 chain 148950 chr8 146364022 + 13931235 13933069 L1PA7 6471 - 8 1848 24766 357 2 0 507 1 0 44 0 4 112 15 16 106 0 1 50 1 0 4 0 1 366 0 2 46 0 1 223 chain 111527 chr8 146364022 + 13948503 13949933 L1PA7 6471 - 157 1606 33802 224 0 1 4 10 9 228 0 12 215 2 1 14 4 0 154 5 21 62 5 1 503 chain 294674 chr8 146364022 + 13951666 13955431 L1PA7 6471 - 14 3836 13717 101 0 1 40 20 21 49 9 13 100 0 1 502 0 6 16 1 5 252 4 6 213 0 21 682 9 10 204 25 27 14 9 5 109 0 1 397 1 4 109 0 4 58 5 8 377 5 9 68 4 7 382 chain 195235 chr8 146364022 + 13975098 13977571 L1PA7 6471 - 4 2501 19565 335 0 1 359 6 19 54 1 3 72 0 3 15 0 4 947 0 1 146 49 52 82 3 0 374 1 0 18 0 1 11 chain 12633 chr8 146364022 + 13983043 13983216 L1PA10 4194 + 3991 4161 149718 91 0 1 33 3 0 34 1 0 11 chain 492193 chr8 146364022 + 13993690 13999778 L1PA6 6164 + 0 6107 7258 21 13 0 8 10 23 145 4 5 307 2 1 208 0 1 23 0 1 270 4 0 84 0 1 224 0 1 129 1 0 686 6 1 186 4 0 632 3 1 231 0 1 32 0 1 54 0 4 226 0 4 356 0 13 71 1 2 155 2 4 537 1 0 415 0 5 233 5 7 523 1 0 275 chain 24608 chr8 146364022 + 14004133 14004401 AluYa5 310 + 34 302 106952 268 chain 4188 chr8 146364022 + 14011916 14011966 MLT1A 405 + 334 384 204724 50 chain 11623 chr8 146364022 + 14015934 14016078 MLT2A2 560 - 397 541 153800 73 0 1 10 1 0 60 chain 82168 chr8 146364022 + 14056187 14057258 MER11B 1079 + 0 1079 42694 358 0 5 167 58 68 174 8 2 285 10 9 11 chain 8845 chr8 146364022 + 14069186 14069349 MSTA 426 - 222 426 166400 56 30 56 25 5 20 47 chain 10489 chr8 146364022 + 14090113 14090228 L1PA3long 6157 - 0 115 158295 115 chain 27941 chr8 146364022 + 14097145 14097439 AluYa5 310 + 16 310 93198 294 chain 68361 chr8 146364022 + 14101972 14102739 L1PA3long 6157 - 1370 2137 49019 767 chain 120490 chr8 146364022 + 14102739 14104107 L1PA3long 6157 + 4781 6149 30878 524 2 1 517 0 1 325 chain 24421 chr8 146364022 + 14114997 14115277 L1PA5 6144 - 4 284 107966 280 chain 76659 chr8 146364022 + 14116799 14117640 L1PA2 6032 - 982 1821 44908 664 3 1 174 chain 87696 chr8 146364022 + 14117640 14118619 L1PA2 6032 + 5053 6032 40490 979 chain 36417 chr8 146364022 + 14128274 14128712 L1PA4 6152 + 5710 6152 74345 49 2 0 58 0 1 323 0 5 6 chain 25609 chr8 146364022 + 14189673 14189978 AluY 311 + 11 311 101680 111 5 0 189 chain 6184 chr8 146364022 + 14190063 14190162 HY1 111 + 0 103 183701 57 7 10 11 1 2 23 chain 28011 chr8 146364022 + 14199453 14199824 THE1A-int 1579 + 0 370 92964 169 3 4 37 7 5 155 chain 72102 chr8 146364022 + 14235048 14235839 L1PA3long 6157 - 8 799 47434 791 chain 25468 chr8 146364022 + 14235839 14236121 L1PA3long 6157 + 5047 5329 102362 282 chain 29276 chr8 146364022 + 14241480 14241829 L1PA4 6152 - 1 353 87661 45 6 10 278 1 0 19 chain 2524 chr8 146364022 + 14256212 14256428 LTR56 451 - 205 420 232841 17 14 18 13 148 143 24 chain 209654 chr8 146364022 + 14258805 14261134 L1PA3long 6157 - 7 2337 18514 2205 0 1 124 chain 14983 chr8 146364022 + 14268072 14268284 L1PA8 5853 + 5645 5853 141373 30 5 4 10 1 0 55 1 0 16 1 0 93 chain 16435 chr8 146364022 + 14280654 14280831 L1PA3long 6157 + 5980 6157 137107 177 chain 178853 chr8 146364022 + 14287585 14290139 L1PB1 5432 + 2842 5391 21088 49 14 17 12 1 0 342 2 3 444 0 1 17 2 5 93 0 4 542 8 11 130 1 6 105 1 2 128 0 1 51 3 1 189 1 2 61 1 2 43 8 7 4 1 0 20 1 0 12 1 0 10 20 14 49 21 19 42 1 0 16 46 36 14 2 0 24 1 0 21 chain 15657 chr8 146364022 + 14292005 14292288 L1PB 1623 - 111 384 139407 10 5 1 13 3 0 4 1 0 30 2 1 7 1 0 127 1 0 4 23 19 26 0 5 26 chain 174927 chr8 146364022 + 14300381 14302331 L1PA3long 6157 + 4207 6157 21470 1950 chain 86161 chr8 146364022 + 14314516 14315523 LTR13 1007 + 0 1007 41090 249 11 14 163 3 0 581 chain 26464 chr8 146364022 + 14316628 14316928 L1PA4 6152 + 5843 6143 98189 300 chain 3990 chr8 146364022 + 14326743 14326790 MER20 218 - 10 57 207527 47 chain 19255 chr8 146364022 + 14343342 14343545 AluYb8 318 - 11 214 129364 203 chain 8295 chr8 146364022 + 14355115 14355209 MER30 238 + 138 232 169430 94 chain 72110 chr8 146364022 + 14360041 14360961 L1PA7 6471 + 5536 6467 47429 86 0 2 21 11 13 40 0 2 142 3 4 27 0 4 260 2 0 38 1 2 204 0 1 85 chain 19583 chr8 146364022 + 14390514 14390746 L1PA5 6144 - 9 241 128422 232 chain 83041 chr8 146364022 + 14398694 14399771 L1PA8 5853 - 38 1127 42318 55 3 2 17 2 1 39 2 1 72 0 7 13 2 0 35 10 9 147 0 12 287 0 1 106 2 0 285 chain 73805 chr8 146364022 + 14401593 14402670 MER11A 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3800 6144 18872 130 1 2 215 1 0 316 0 1 123 0 1 227 1 2 466 4 5 522 1 2 84 0 1 247 chain 57080 chr8 146364022 + 14487888 14488540 L1PA5 6144 + 5491 6144 54487 321 0 1 331 chain 46905 chr8 146364022 + 14522535 14523068 L1PA4 6152 - 11 548 61303 63 0 2 391 0 2 79 chain 23966 chr8 146364022 + 14530731 14531159 THE1D 372 + 0 372 110537 168 0 4 6 95 35 31 0 1 88 10 9 30 chain 4662 chr8 146364022 + 14532748 14532806 MSTA 426 + 355 414 198932 12 0 1 46 chain 138983 chr8 146364022 + 14544705 14546254 L1PA3long 6157 - 0 1550 26308 856 0 1 693 chain 18289 chr8 146364022 + 14546254 14546483 L1P1 4361 + 4115 4341 131877 36 1 0 154 1 0 23 2 1 12 chain 19680 chr8 146364022 + 14564546 14564788 L1PA4 6152 - 1 245 128163 106 4 6 132 chain 110779 chr8 146364022 + 14576363 14577602 L1PA3long 6157 - 0 1238 34008 15 3 0 5 0 2 1216 chain 58142 chr8 146364022 + 14588346 14589045 L1PA7 6471 + 5760 6461 53905 49 0 2 650 chain 13539 chr8 146364022 + 14594005 14594338 L1PB1 5432 - 8 309 146214 20 1 0 13 1 0 21 9 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629 chain 54189 chr8 146364022 + 15815241 15815834 L1PA3long 6157 + 4655 5248 56239 593 chain 4154 chr8 146364022 + 15825567 15825615 THE1D 372 - 72 120 205193 48 chain 10063 chr8 146364022 + 15839227 15839361 L1MC4 1079 - 259 393 160258 54 1 0 15 0 1 64 chain 16749 chr8 146364022 + 15844553 15844750 L1PA4 6152 + 5961 6151 136257 36 7 0 154 chain 3088 chr8 146364022 + 15846343 15846379 L1M2 1805 - 291 327 223128 36 chain 4334 chr8 146364022 + 15860576 15860852 MSTB2 466 - 131 432 202786 21 75 78 39 120 142 21 chain 24776 chr8 146364022 + 15883762 15884124 THE1B 368 - 0 368 106022 115 15 14 7 1 0 14 0 4 11 0 1 32 2 1 99 2 6 64 chain 294469 chr8 146364022 + 15886743 15890022 L1PA4 6152 - 0 3280 13736 358 0 1 2111 1 0 258 0 1 551 chain 248699 chr8 146364022 + 15890022 15892850 L1PA4 6152 + 11 2844 16304 1554 0 1 635 0 2 110 0 1 284 0 1 245 chain 28538 chr8 146364022 + 15893878 15894179 AluYa5 310 + 9 310 91009 301 chain 29721 chr8 146364022 + 15905199 15905568 THE1B 368 - 0 368 85755 195 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16660 chr8 146364022 + 16430679 16430856 AluYa5 310 + 124 301 136510 177 chain 101525 chr8 146364022 + 16490202 16491310 L1PA2 6032 - 1 1109 36392 1108 chain 22330 chr8 146364022 + 16501910 16502170 AluSg7 307 - 48 307 118778 127 1 0 132 chain 2908 chr8 146364022 + 16502331 16502498 L1MD2 1676 - 1294 1459 226898 28 116 114 23 chain 280141 chr8 146364022 + 16504786 16508801 L1PA8 5853 - 0 5510 14636 85 18 17 7 1 0 50 27 24 39 3 0 23 2 0 44 1 0 321 0 1 79 0 2 87 0 1 64 1 4 16 27 48 82 0 5 122 7 0 7 7 14 205 0 32 134 6 0 394 0 1 60 9 8 25 11 15 101 10 13 461 7 6 57 10 31 163 9 8 30 0 2 7 0 124 459 0 1 5 1 0 81 8 6 183 0 1 172 0 1296 54 11 13 54 136 134 32 chain 5346 chr8 146364022 + 16509474 16509535 L1P2 5180 - 2958 3019 191576 61 chain 26059 chr8 146364022 + 16513973 16514278 AluY 311 + 5 309 99794 276 2 1 27 chain 21709 chr8 146364022 + 16517581 16517832 L1PA4 6152 + 5892 6143 121353 251 chain 469549 chr8 146364022 + 16527628 16532793 L1PA2 6032 + 1 6025 8049 697 1 8 568 9 0 9 0 9 2275 1 0 377 0 853 1228 chain 22562 chr8 146364022 + 16562170 16562442 L1PA7 6471 - 18 290 117753 272 chain 28429 chr8 146364022 + 16562442 16562783 L1PA7 6471 + 5831 6174 91464 305 0 2 36 chain 12577 chr8 146364022 + 16573400 16573542 L1PA8A 6298 - 7 149 149927 142 chain 7451 chr8 146364022 + 16574323 16574412 PRIMA4_LTR 623 + 0 89 174439 89 chain 23513 chr8 146364022 + 16580742 16581123 THE1C 375 + 0 375 113059 105 11 12 60 40 39 80 14 8 71 chain 22606 chr8 146364022 + 16609183 16609456 L1PA7 6471 - 365 641 115527 116 0 3 157 chain 27014 chr8 146364022 + 16609456 16609781 L1PA7 6471 + 6101 6425 96238 127 1 0 197 chain 4091 chr8 146364022 + 16617636 16617683 LTR12C 1709 - 892 939 206064 47 chain 20718 chr8 146364022 + 16623299 16623647 THE1B 368 + 0 361 124898 18 2 0 22 0 5 9 0 1 117 62 71 118 chain 19735 chr8 146364022 + 16625180 16625464 L1PA8 5853 + 5574 5853 127997 13 0 1 22 2 0 72 15 13 45 2 1 19 1 0 93 chain 27106 chr8 146364022 + 16626769 16627073 AluYk4 311 - 2 306 95924 304 chain 5237 chr8 146364022 + 16636932 16637011 MER58A 224 + 31 113 192655 11 6 9 62 chain 130769 chr8 146364022 + 16641235 16642779 LTR12C 1709 + 0 1709 27914 186 0 2 121 0 1 4 1 0 400 0 1 35 0 161 200 1 0 6 2 0 107 0 4 481 chain 57098 chr8 146364022 + 16649378 16650013 L1PA4 6152 - 733 1369 54473 460 0 1 175 chain 66710 chr8 146364022 + 16650013 16650763 L1PA4 6152 + 5403 6151 49782 494 2 0 254 chain 13393 chr8 146364022 + 16666469 16666676 MER30 238 + 37 238 146746 36 5 8 10 24 15 132 chain 32357 chr8 146364022 + 16678950 16679301 L1PA2 6032 - 0 351 80262 351 chain 27600 chr8 146364022 + 16685184 16685580 MLT2A1 477 - 81 477 94346 11 6 0 64 1 0 49 6 7 79 0 1 12 9 13 17 0 1 142 chain 116456 chr8 146364022 + 16699302 16700599 L1PA4 6152 + 4636 5933 32292 28 0 1 1233 1 0 35 chain 18458 chr8 146364022 + 16718246 16718495 L1PA8 5853 + 5608 5853 131623 74 8 6 52 2 1 18 2 1 93 chain 278822 chr8 146364022 + 16730243 16734011 L1PA10 4194 - 35 3812 14703 9 1 0 34 3 0 30 5 4 137 0 1 12 0 2 246 2 1 132 10 7 190 0 2 52 5 8 44 12 17 26 0 1 232 14 15 277 0 4 64 20 15 364 1 7 65 0 1 4 24 25 96 1 0 455 10 8 158 3 0 468 0 1 54 0 10 395 10 8 47 6 7 21 1 0 8 7 0 13 chain 82127 chr8 146364022 + 16735816 16736906 L1P2 5180 + 2 1116 42711 78 0 1 69 2 1 96 18 17 243 1 0 8 1 0 272 1 0 6 1 0 104 0 4 26 0 25 164 chain 37465 chr8 146364022 + 16743877 16744301 L1P1 4361 - 133 556 72869 78 1 0 345 chain 31952 chr8 146364022 + 16744301 16744660 L1PA3long 6157 + 5800 6157 80938 352 2 0 5 chain 29349 chr8 146364022 + 16760298 16760607 AluYg6 310 + 0 309 87304 309 chain 144185 chr8 146364022 + 16779232 16781034 L1PA7 6471 - 1 1802 25444 6 2 0 849 1 0 267 8 1 7 0 7 121 0 1 29 0 1 512 chain 552791 chr8 146364022 + 16801477 16807504 L1PA2 6032 + 1 6027 1096 71 0 1 184 1 0 54 0 1 4549 1 0 395 1 0 771 chain 2467 chr8 146364022 + 16809778 16809821 L1MA2 4263 + 2627 2668 233502 17 6 4 20 chain 13760 chr8 146364022 + 16819664 16819890 MER30 238 + 10 235 145403 26 23 1 70 4 19 27 12 18 64 chain 86245 chr8 146364022 + 16828532 16829487 L1PA3long 6157 + 5202 6157 41060 105 1 0 268 0 1 581 chain 525941 chr8 146364022 + 16831364 16837779 L1PA7 6471 - 2 6468 4591 146 0 1 369 0 1 55 3 0 278 3 0 596 0 1 205 0 4 3 0 2 138 0 4 147 2 1 5 0 1 238 0 1 12 0 2 894 6 15 457 0 4 247 18 12 277 0 2 90 1 0 352 0 1 464 0 17 73 1 11 940 0 3 139 4 19 13 14 1 225 chain 18287 chr8 146364022 + 16846928 16847201 L1PA8 5853 + 5582 5853 132108 26 2 0 70 2 1 8 2 1 14 0 1 37 2 1 16 6 5 22 0 3 66 chain 5416 chr8 146364022 + 16875981 16876278 MER63B 433 + 46 360 190838 20 20 25 39 0 1 10 182 193 26 chain 26248 chr8 146364022 + 16892777 16893486 THE1B-int 1605 + 0 695 35095 430 38 21 118 0 3 123 chain 120204 chr8 146364022 + 16893501 16894890 LTR12C 1709 - 0 1709 30982 481 0 4 107 2 0 6 1 319 792 chain 26804 chr8 146364022 + 16894932 16895656 THE1B-int 1605 + 757 1552 35095 89 0 68 122 0 1 295 1 2 211 0 1 6 chain 19069 chr8 146364022 + 16896501 16896815 Tigger1 2417 + 2076 2394 129909 82 24 25 25 1 0 39 5 8 29 13 14 96 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148 6 21 239 chain 108397 chr8 146364022 + 17164333 17165554 L1PA4 6152 + 4926 6151 34594 103 1 0 275 0 4 590 1 0 231 0 2 20 chain 3962 chr8 146364022 + 17203132 17203180 MADE1 96 - 48 96 207946 48 chain 19713 chr8 146364022 + 17248091 17248470 THE1C 375 - 0 375 128058 34 1 0 124 31 32 46 46 47 38 10 7 34 2 0 13 chain 27853 chr8 146364022 + 17265617 17265930 AluYb8 318 + 0 314 93515 131 0 1 182 chain 21783 chr8 146364022 + 17284736 17285787 THE1B 368 + 0 366 121091 39 10 25 97 12 11 28 5 1 84 704 9 72 chain 4927 chr8 146364022 + 17340843 17340903 Tigger1 2417 + 1241 1301 195970 60 chain 37131 chr8 146364022 + 17346748 17347290 MER41A 554 - 7 554 73338 66 22 20 48 1 5 191 31 33 19 0 1 164 chain 11956 chr8 146364022 + 17349749 17349940 MER44A 345 + 130 324 152381 60 0 1 38 30 32 63 chain 7110 chr8 146364022 + 17358043 17358134 L1PA6 6164 + 6069 6160 176679 91 chain 13697 chr8 146364022 + 17379563 17379914 THE1B 368 - 0 360 145610 40 26 28 51 135 142 99 chain 7107 chr8 146364022 + 17380558 17380647 L1PA8 5853 + 5748 5836 176704 12 1 0 76 chain 104203 chr8 146364022 + 17380688 17382242 L1PB1 5432 + 3873 5361 35689 100 0 8 135 0 1 82 3 4 263 0 1 162 0 7 118 11 10 294 9 7 4 0 1 13 85 31 23 1 0 9 1 0 6 11 7 9 2 0 52 3 1 10 7 6 44 1 0 13 2 0 8 15 6 18 13 10 10 2 0 15 chain 27228 chr8 146364022 + 17416724 17417271 THE1C 375 - 0 375 95504 25 1 0 181 177 5 55 3 4 105 chain 12789 chr8 146364022 + 17421986 17422214 MER1B 344 - 0 249 149099 63 5 14 47 4 0 37 19 34 14 8 9 31 chain 79727 chr8 146364022 + 17430347 17431416 MER11A 1151 + 0 1151 43721 55 1 100 75 1 0 64 4 0 30 0 2 78 2 0 36 0 1 97 0 1 194 0 2 75 0 26 26 43 0 58 0 1 46 1 0 16 0 1 167 chain 9225 chr8 146364022 + 17440911 17441080 MSTB1-int 1597 + 1422 1593 164431 44 4 5 23 0 1 25 0 1 18 30 29 25 chain 23572 chr8 146364022 + 17451136 17451426 AluSp 311 + 15 311 112728 132 1 4 20 0 3 137 chain 58672 chr8 146364022 + 17461597 17462254 L1PA4 6152 + 5494 6151 53597 657 chain 245042 chr8 146364022 + 17492777 17496247 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chr8 146364022 + 17900466 17900806 THE1A 353 - 0 340 121044 216 53 52 32 0 2 4 1 0 34 chain 88181 chr8 146364022 + 17905673 17907055 L1PB1 5432 + 4112 5413 40308 93 1 3 417 1 2 174 5 6 184 0 1 22 0 2 18 19 19 50 73 11 24 26 20 9 2 0 53 2 1 9 13 12 39 1 0 15 1 0 4 2 0 13 31 19 14 2 0 23 5 4 11 0 1 7 0 3 9 1 0 9 chain 22538 chr8 146364022 + 17917285 17917581 L1PA8 5853 - 0 290 117855 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 45 chain 29731 chr8 146364022 + 17949302 17949723 HSMAR2 1300 - 74 543 85723 110 0 8 67 22 56 73 0 2 29 0 4 84 0 2 5 2 0 29 chain 214878 chr8 146364022 + 17964157 17966806 HERVL-int 5654 - 723 3386 18173 99 11 14 297 0 1 490 8 11 488 21 7 201 0 6 33 0 1 206 5 7 84 0 12 279 0 1 4 1 0 422 chain 3585 chr8 146364022 + 17967238 17967294 THE1-int 844 + 1 55 213905 18 1 0 22 2 1 13 chain 5804 chr8 146364022 + 17982326 17982388 L1PA4 6152 + 6089 6151 187098 62 chain 9250 chr8 146364022 + 17993418 17993531 THE1C 375 + 219 332 164310 113 chain 43675 chr8 146364022 + 17997066 17997591 MER41A 554 - 28 554 64596 211 0 1 314 chain 36123 chr8 146364022 + 17998177 17998684 LTR10G 522 + 0 522 74736 17 1 7 67 7 0 108 1 17 127 20 19 86 0 2 62 1 0 10 chain 20979 chr8 146364022 + 18001023 18001302 MER41B 635 - 356 635 123994 149 3 4 34 1 0 92 chain 4519 chr8 146364022 + 18009431 18009491 L1MA4 2864 + 2746 2804 200561 21 2 0 37 chain 142651 chr8 146364022 + 18048942 18050509 L1PA3long 6157 + 4587 6157 25705 295 0 3 1272 chain 29725 chr8 146364022 + 18057324 18057915 L1PA15 4387 + 3819 4366 85741 14 4 0 7 0 1 5 1 0 44 2 0 42 0 2 108 39 11 42 25 24 12 1 0 53 2 1 23 5 1 8 1 0 39 34 38 20 3 1 14 5 0 26 1 0 11 chain 52285 chr8 146364022 + 18059924 18060611 LTR12_ 688 - 0 657 57436 140 3 0 365 0 1 37 0 1 54 24 0 53 5 0 6 chain 3626 chr8 146364022 + 18064325 18064365 L1PA10 4194 - 169 209 213228 40 chain 12491 chr8 146364022 + 18064815 18065027 L1PA10 4194 - 33 229 150288 11 1 0 33 4 1 6 1 0 34 3 0 21 23 15 75 chain 14566 chr8 146364022 + 18076148 18076345 PRIMA4_LTR 623 - 406 623 142692 16 0 23 86 1 0 63 1 0 4 1 0 25 chain 23809 chr8 146364022 + 18093490 18093908 L1PA8 5853 - 6 420 111423 19 9 0 6 1 10 37 16 15 19 14 13 8 0 3 15 0 7 6 19 10 71 2 0 44 1 0 131 chain 7711 chr8 146364022 + 18131552 18131804 MER41A 554 + 0 251 69021 213 29 28 10 chain 42915 chr8 146364022 + 18131832 18132565 LTR17 781 - 24 781 65519 16 12 35 239 103 104 36 1 0 72 19 18 46 3 4 6 1 0 25 1 0 95 1 0 27 0 4 30 chain 9210 chr8 146364022 + 18132565 18132866 MER41A 554 + 251 552 69021 301 chain 17059 chr8 146364022 + 18160282 18160555 Tigger2a 444 - 175 444 135434 61 0 4 50 15 0 7 18 28 16 3 0 103 chain 2507 chr8 146364022 + 18161797 18161906 L1MA7 2200 + 2059 2166 233038 26 59 58 16 1 0 7 chain 35700 chr8 146364022 + 18177912 18178376 LTR2 463 - 0 463 75270 88 14 15 168 3 1 191 chain 31599 chr8 146364022 + 18219531 18219991 LTR7B 505 + 0 498 81491 108 0 10 57 0 38 14 0 24 29 31 0 42 1 0 43 1 0 75 15 14 44 chain 6562 chr8 146364022 + 18220129 18220334 LTR49-int 1717 - 597 821 180772 32 104 125 4 1 0 51 1 0 12 chain 28179 chr8 146364022 + 18225528 18227308 L1PREC2 3366 + 151 2995 92378 19 1 0 9 5 3 18 7 2 7 1 0 23 1 0 15 1 0 7 2 0 4 1 0 32 6 5 48 1081 2198 51 2 0 160 2 0 47 32 31 20 49 38 17 6 1 15 3 1 24 1 0 5 35 21 23 chain 34557 chr8 146364022 + 18249712 18250211 MLT2A2 560 - 19 560 76819 128 0 11 63 0 32 80 59 58 169 chain 6920 chr8 146364022 + 18250374 18250654 LTR49 580 - 274 570 178031 29 22 34 17 1 0 29 142 147 40 chain 25573 chr8 146364022 + 18251453 18251861 LTR7 482 - 0 482 101856 187 5 6 25 10 42 102 0 1 4 44 84 31 chain 44013 chr8 146364022 + 18266772 18267325 LTR19B 566 - 0 566 64188 10 0 4 53 0 2 196 6 0 5 6 0 62 0 19 215 chain 28720 chr8 146364022 + 18277346 18277710 THE1B 368 + 0 368 90245 173 1 0 23 0 4 34 0 1 133 chain 7385 chr8 146364022 + 18278386 18278476 MLT1B 390 + 281 371 174874 90 chain 8254 chr8 146364022 + 18286434 18286558 THE1B 368 + 245 368 169661 59 16 15 49 chain 25674 chr8 146364022 + 18289847 18290190 L1PA8A 6298 + 5955 6291 101392 29 0 10 10 18 0 4 0 1 11 0 1 4 1 0 266 chain 12719 chr8 146364022 + 18299655 18299839 MER30 238 - 0 197 149380 43 3 0 57 2 0 7 4 22 68 chain 34282 chr8 146364022 + 18306268 18306737 MER4A1 472 + 0 461 77236 88 18 19 321 8 0 29 1 0 4 chain 3271 chr8 146364022 + 18306766 18306802 MIR 256 - 111 147 219555 36 chain 6975 chr8 146364022 + 18318846 18319002 MER77B 728 + 69 232 177642 30 62 69 64 chain 2880 chr8 146364022 + 18319276 18319308 MER39 703 - 231 263 227363 32 chain 500286 chr8 146364022 + 18324401 18330566 L1PA5 6144 + 1 6136 6819 119 0 14 76 2 1 269 1 0 43 0 2 276 0 17 21 28 11 102 25 0 213 13 4 1144 12 1 125 11 1 736 6 5 326 5 7 127 3 0 592 0 1 16 9 11 49 0 5 951 0 1 9 0 4 13 1 0 19 1 2 822 chain 39104 chr8 146364022 + 18340045 18340714 L1PB1 5432 - 28 645 70595 13 17 15 6 1 0 24 2 0 9 13 10 30 13 1 16 1 0 59 2 1 53 15 9 11 1 0 13 1 0 20 35 11 87 0 2 227 chain 6952 chr8 146364022 + 18346012 18346095 L1P4 1494 + 151 234 177794 83 chain 19877 chr8 146364022 + 18366413 18366664 AluSp 311 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18474432 AluYa5 310 - 6 310 91361 304 chain 20083 chr8 146364022 + 18481982 18482193 L1PA3long 6157 + 5933 6144 126881 211 chain 33838 chr8 146364022 + 18493108 18493567 L1PA8 5853 + 5408 5853 77874 156 1 0 44 2 0 70 2 1 18 5 0 12 3 0 31 2 1 17 6 5 90 chain 23254 chr8 146364022 + 18497858 18498230 THE1C 375 + 0 375 114426 81 1 2 23 33 37 31 26 24 177 chain 24725 chr8 146364022 + 18512551 18512857 AluY 311 + 0 301 106290 133 15 10 158 chain 3639 chr8 146364022 + 18524841 18524883 LTR12C 1709 - 996 1038 212991 42 chain 95106 chr8 146364022 + 18607687 18608812 LTR12C 1709 - 0 1405 38064 481 0 4 106 3 1 6 1 0 103 0 278 262 6 7 157 chain 3330 chr8 146364022 + 18645439 18645478 MER58A 224 - 17 56 218404 39 chain 45053 chr8 146364022 + 18650148 18650674 L1PA5 6144 + 5446 5971 62991 364 1 2 152 2 0 7 chain 14405 chr8 146364022 + 18650674 18650842 L1PA5 6144 + 5976 6144 143195 168 chain 74962 chr8 146364022 + 18651458 18652426 LTR5_Hs 974 + 0 974 46032 289 0 1 171 6 7 188 1 0 163 8 15 19 20 18 103 chain 19925 chr8 146364022 + 18700624 18700857 AluY 311 + 36 297 127377 203 1 29 29 chain 18880 chr8 146364022 + 18727967 18728203 L1PA7 6471 + 6237 6469 130424 71 0 2 6 2 0 143 4 0 10 chain 49522 chr8 146364022 + 18767631 18768160 L1HS 6032 + 5503 6032 59372 529 chain 21880 chr8 146364022 + 18773332 18773632 AluSp 311 + 10 306 120707 43 7 6 79 7 6 157 2 0 5 chain 29106 chr8 146364022 + 18777203 18777521 L1PA2 6032 + 5712 6030 88519 318 chain 16345 chr8 146364022 + 18799975 18800304 MLT1B 390 + 1 338 137357 63 0 1 54 76 81 75 30 32 31 chain 18356 chr8 146364022 + 18806544 18806754 AluY 311 + 94 305 131918 38 0 1 172 chain 6927 chr8 146364022 + 18813836 18813920 MER5A1 166 - 60 144 177986 84 chain 24822 chr8 146364022 + 18820458 18820811 THE1A 353 - 0 353 105758 219 24 25 59 1 2 35 2 0 13 chain 9253 chr8 146364022 + 18844425 18844554 MER85 139 + 0 139 164296 89 1 0 7 3 14 29 chain 6587 chr8 146364022 + 18860143 18860262 MER2 342 - 127 249 180561 74 9 13 15 10 9 11 chain 2622 chr8 146364022 + 18860596 18860639 MIR 256 - 140 182 231396 19 2 1 22 chain 24588 chr8 146364022 + 18886879 18887239 THE1C 375 - 0 375 107048 25 1 0 197 7 11 58 19 31 53 chain 43594 chr8 146364022 + 18907865 18908345 L1PA3long 6157 + 5666 6146 64693 480 chain 8662 chr8 146364022 + 18926170 18926282 L1PA5 6144 + 6033 6144 167412 99 2 1 11 chain 3803 chr8 146364022 + 18948269 18948316 Tigger3b 1229 + 883 930 210360 47 chain 28331 chr8 146364022 + 18971206 18971735 L1MA1 4479 - 290 817 91832 18 7 0 12 29 25 27 2 0 29 1 0 39 3 15 16 1 11 40 7 4 7 1 0 14 1 0 5 10 11 57 1 0 19 2 0 14 1 0 71 1 0 9 6 7 4 1 0 21 1 0 52 chain 3398 chr8 146364022 + 18983365 18983408 Charlie1a 1436 - 3 46 217112 43 chain 23301 chr8 146364022 + 19001613 19001897 AluSp 311 - 16 300 114190 284 chain 83448 chr8 146364022 + 19013283 19014386 L1PA8 5853 - 1 1118 42139 92 1 0 19 2 1 38 0 41 40 6 15 42 1 0 477 0 3 68 9 10 64 45 8 199 chain 42561 chr8 146364022 + 19025236 19025766 MER41A 554 + 0 532 65947 326 3 6 124 2 1 75 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19907509 19907571 L1PA3long 6157 + 6094 6156 188368 62 chain 103812 chr8 146364022 + 19912120 19913569 LTR12C 1709 + 0 1709 35766 256 23 45 23 1 0 14 0 43 83 8 7 30 1 4 255 0 77 237 1 48 86 24 0 16 11 4 171 0 1 39 0 101 70 16 15 84 chain 98812 chr8 146364022 + 19924298 19925864 L1PB 1623 - 170 1419 37068 7 1 0 137 5 4 820 1 0 38 309 0 29 3 0 22 1 0 126 4 3 63 chain 108583 chr8 146364022 + 19925865 19927429 L1PB1 5432 + 3868 5424 34542 30 9 22 285 0 2 20 1 2 302 2 4 91 5 0 185 2 5 233 3 4 50 1 2 9 9 0 24 1 0 9 16 11 11 2 0 47 6 5 10 7 6 39 7 6 14 9 12 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 16 1 0 4 chain 29837 chr8 146364022 + 19955071 19955502 MLT2A1 477 - 0 477 85327 6 0 4 31 32 51 200 0 22 12 8 9 142 chain 19784 chr8 146364022 + 19959343 19959706 THE1B 368 + 0 368 127863 111 23 24 42 40 37 10 11 19 63 7 6 56 chain 23933 chr8 146364022 + 19971954 19972320 MER57B1 401 + 0 370 110732 118 0 1 40 15 17 41 24 26 118 1 0 9 chain 29339 chr8 146364022 + 19980272 19980577 AluYa5 310 - 5 310 87348 305 chain 161816 chr8 146364022 + 20014437 20016395 HERV17-int 4347 + 13 2545 23089 14 1 0 50 6 5 30 2 0 27 1 0 187 0 575 572 1 2 27 0 1 27 5 6 4 1 0 178 0 1 353 1 2 471 chain 23374 chr8 146364022 + 20016819 20017144 LTR17 781 + 4 325 113789 55 1 0 97 1 0 22 8 7 51 1 0 89 chain 36188 chr8 146364022 + 20032658 20033123 MER11B 1079 - 619 1079 74647 64 1 0 204 3 0 40 1 0 152 chain 20189 chr8 146364022 + 20034918 20035160 L1PA5 6144 + 5900 6144 126562 32 0 2 210 chain 34302 chr8 146364022 + 20050619 20051043 MER57A1 433 - 6 433 77207 143 0 2 170 0 1 111 chain 9020 chr8 146364022 + 20064994 20065091 L1PA3long 6157 + 6060 6157 165494 97 chain 42253 chr8 146364022 + 20134452 20135049 MER41B 635 + 0 614 66330 93 1 0 29 9 10 228 0 1 65 2 1 40 7 7 38 6 18 19 0 5 60 chain 19715 chr8 146364022 + 20140700 20140988 MLT1A0 366 + 3 306 128053 44 8 9 81 14 28 141 chain 4150 chr8 146364022 + 20147725 20147774 5S 121 + 41 90 205236 49 chain 4903 chr8 146364022 + 20149111 20149178 LTR10E 629 + 483 548 196250 24 2 1 25 1 0 15 chain 7375 chr8 146364022 + 20183693 20183788 L1MB8 1703 + 879 974 174936 95 chain 37914 chr8 146364022 + 20209865 20210353 MER41A 554 - 0 554 72263 25 7 73 456 chain 65328 chr8 146364022 + 20212728 20213567 L1PA7 6471 - 1 812 50411 23 0 1 307 31 5 285 1 0 4 0 1 75 0 2 46 3 0 19 2 0 43 chain 22673 chr8 146364022 + 20214440 20214796 MSTA 426 - 0 421 117198 84 10 46 57 5 3 30 2 0 50 18 46 94 0 5 6 chain 5976 chr8 146364022 + 20216154 20216266 MLT1B 390 + 6 124 185461 15 28 34 69 chain 25361 chr8 146364022 + 20249636 20249922 AluYc 301 - 13 301 102882 172 0 2 114 chain 55045 chr8 146364022 + 20258718 20259388 L1PA7 6471 - 4 671 55678 6 4 0 154 0 1 506 chain 31178 chr8 146364022 + 20271908 20272261 L1PA4 6152 - 0 359 82203 12 0 6 341 chain 12295 chr8 146364022 + 20272261 20272399 L1PA4 6152 + 5653 5791 151029 138 chain 11840 chr8 146364022 + 20290322 20290465 MSTA 426 - 0 146 152868 102 0 3 41 chain 26331 chr8 146364022 + 20344374 20344726 L1PA8 5853 + 5509 5853 98690 55 1 0 44 2 0 74 1 0 11 6 1 44 2 3 9 0 1 9 1 0 93 chain 40938 chr8 146364022 + 20364966 20365554 MER41B 635 + 0 628 67988 49 0 1 69 6 35 322 5 6 28 11 15 24 12 17 62 chain 4059 chr8 146364022 + 20394777 20394826 MLT1J2 417 - 133 182 206507 49 chain 28353 chr8 146364022 + 20428188 20428566 MLT2A1 477 + 0 382 91754 140 10 11 18 0 4 22 2 1 186 chain 3383 chr8 146364022 + 20447144 20447180 MER61A 341 + 0 36 217425 36 chain 20347 chr8 146364022 + 20464513 20464824 L1PB2 3958 - 120 426 126075 63 1 0 18 6 4 36 0 1 34 5 4 61 1 0 64 9 8 13 chain 11921 chr8 146364022 + 20464931 20465084 L1PA7 6471 - 2 153 152508 5 2 0 146 chain 38186 chr8 146364022 + 20465084 20465607 L1P3 4156 - 3637 4156 71859 199 1 0 58 14 13 78 6 4 78 0 1 5 2 1 82 chain 3844 chr8 146364022 + 20465805 20465855 L1MC4 1079 + 214 264 209725 50 chain 246455 chr8 146364022 + 20469331 20472364 L1PA7 6471 - 1 3032 16422 11 2 0 7 1 0 605 1 0 244 0 4 29 0 1 253 0 1 485 1 0 998 1 0 104 0 1 153 1 4 73 29 23 35 chain 12666 chr8 146364022 + 20496622 20496818 L1PB4 2604 - 233 434 149586 28 7 8 26 8 12 127 chain 353285 chr8 146364022 + 20539637 20543557 L1PA3long 6157 - 0 3881 11519 269 46 8 62 1 0 270 0 1 394 0 1 2871 2 0 5 chain 20847 chr8 146364022 + 20556345 20556723 THE1D 372 - 0 370 124473 148 1 0 24 32 34 57 1 0 4 21 25 6 3 0 13 14 5 54 chain 491267 chr8 146364022 + 20600271 20606288 L1PA6 6164 + 59 6162 7308 53 21 7 82 0 1 298 10 10 418 0 25 85 6 8 129 5 14 30 6 17 185 0 5 27 0 2 383 0 1 484 4 5 68 3 0 107 0 1 426 0 9 260 0 4 20 2 1 139 0 5 603 0 2 37 0 3 343 0 1 396 0 5 202 0 1 357 0 5 82 0 4 343 1 2 249 15 21 138 chain 3496 chr8 146364022 + 20662453 20662605 SVA_F 1814 - 1232 1304 215426 25 101 21 26 chain 11527 chr8 146364022 + 20662617 20662766 THE1A 353 - 205 353 154191 38 1 0 110 chain 61870 chr8 146364022 + 20674203 20674952 LTR17 781 - 12 781 51961 434 0 11 196 0 9 119 chain 21669 chr8 146364022 + 20757682 20757937 AluY 311 + 57 311 121500 70 1 0 184 chain 16803 chr8 146364022 + 20778503 20778855 THE1C 375 - 0 375 136108 46 5 9 76 51 64 37 1 9 12 50 48 74 chain 480560 chr8 146364022 + 20813567 20819836 L1PA7 6471 + 0 6459 7712 168 6 74 160 3 0 8 1 0 24 12 14 51 27 28 50 13 10 21 0 5 31 21 18 46 1 2 32 0 5 18 2 1 36 3 6 7 1 0 39 16 17 104 1 0 10 14 13 254 13 32 24 0 18 122 0 12 203 18 0 138 0 2 506 14 27 12 0 18 45 0 18 60 5 4 140 5 0 60 0 16 318 4 0 61 4 0 456 4 0 28 0 4 61 8 4 87 0 2 84 1 0 227 8 7 66 3 0 562 0 4 647 13 12 283 1 5 76 0 1 89 0 3 115 0 15 34 0 7 202 4 8 138 0 4 140 chain 34893 chr8 146364022 + 20848184 20848635 L1MA2 4263 - 817 1286 76349 310 5 4 62 0 19 74 chain 5901 chr8 146364022 + 20858420 20858635 MLT1A 405 + 139 381 186179 19 111 139 16 1 2 37 2 0 29 chain 44042 chr8 146364022 + 20903828 20904382 MLT2A2 560 - 0 560 64156 6 0 4 343 3 4 142 0 1 60 chain 4550 chr8 146364022 + 20905832 20905883 MLT2A2 560 - 509 560 200220 51 chain 261437 chr8 146364022 + 20990572 20993891 L1PA8A 6298 - 52 3382 15620 94 0 1 44 0 4 85 1 0 352 0 3 93 0 2 4 0 1 72 9 10 93 0 1 362 8 3 138 1 0 380 2 1 146 0 4 357 4 0 181 14 12 221 5 4 133 0 4 19 0 4 52 1 0 6 7 7 216 0 2 219 chain 3348 chr8 146364022 + 20994009 20994045 MER2 342 - 126 162 218078 36 chain 4070 chr8 146364022 + 21006074 21006128 L1MC1 2226 + 241 295 206312 54 chain 28892 chr8 146364022 + 21007653 21007958 AluYk12 309 + 0 305 89490 305 chain 22715 chr8 146364022 + 21013509 21014052 L1PB1 5432 + 4984 5389 117010 114 138 31 5 1 0 8 8 0 4 1 0 10 23 17 47 2 1 15 1 0 45 1 0 15 18 12 17 2 0 7 1 0 14 2 0 24 1 0 19 chain 2880 chr8 146364022 + 21034348 21034385 Charlie3 2679 - 2625 2661 227373 20 1 0 16 chain 84013 chr8 146364022 + 21048460 21049378 L1PA3long 6157 + 5239 6157 41900 918 chain 14333 chr8 146364022 + 21057823 21058175 L1PB1 5432 + 5105 5426 143449 8 1 0 25 1 0 8 1 0 6 26 20 48 18 16 60 1 0 4 18 8 18 23 25 6 7 0 13 1 0 20 2 1 13 1 0 18 1 0 4 chain 8729 chr8 146364022 + 21077080 21077203 MER85 139 + 6 139 167034 84 3 13 36 chain 24445 chr8 146364022 + 21098713 21099008 AluSp 311 + 11 309 107829 80 0 3 215 chain 30427 chr8 146364022 + 21100868 21101186 AluYb8 318 - 0 318 83600 318 chain 39614 chr8 146364022 + 21187573 21188218 MER4A 717 - 8 717 69872 57 116 176 74 0 4 7 9 0 54 0 11 198 1 0 5 1 0 123 chain 29621 chr8 146364022 + 21192149 21192507 L1PA6 6164 + 5799 6157 86144 6 2 0 205 0 1 102 0 1 43 chain 17608 chr8 146364022 + 21196060 21196258 L1P1 4361 - 374 572 133970 198 chain 57102 chr8 146364022 + 21196264 21196888 L1PA3long 6157 + 5532 6157 54468 572 0 1 52 chain 9487 chr8 146364022 + 21216638 21216837 MLT2B4 540 - 335 536 163132 6 0 1 28 69 70 96 chain 15975 chr8 146364022 + 21261976 21262186 MER75B 242 - 0 201 138432 14 0 1 11 11 0 145 0 1 29 chain 525888 chr8 146364022 + 21288569 21295011 L1PA7 6471 + 3 6470 4593 606 0 1 784 0 1 253 7 6 254 1 0 165 0 1 80 0 1 5 0 4 12 0 7 78 0 3 149 0 1 187 6 9 31 7 1 433 12 13 8 0 4 736 2 0 20 4 2 126 0 1 19 1 0 262 8 12 380 0 3 5 1 9 280 1 0 29 0 1 617 0 4 17 3 0 41 0 1 37 1 0 217 0 1 4 1 0 249 6 0 150 0 1 32 10 9 105 chain 4102 chr8 146364022 + 21393370 21393434 MER96B 391 - 97 158 205921 5 1 0 20 2 0 36 chain 59658 chr8 146364022 + 21396119 21396776 L1PA4 6152 - 434 1094 53014 229 0 3 428 chain 36863 chr8 146364022 + 21396776 21397206 L1PA4 6152 + 5718 6151 73709 99 0 1 173 4 6 154 chain 5216 chr8 146364022 + 21407514 21407593 MADE1 96 + 0 96 192858 22 6 23 51 chain 3875 chr8 146364022 + 21430470 21430511 L1PA3long 6157 - 16 57 209242 41 chain 5569 chr8 146364022 + 21454296 21454361 Tigger3a 397 + 188 253 189391 65 chain 29678 chr8 146364022 + 21456306 21456704 L1PA8 5853 + 5458 5847 85907 102 1 0 48 2 0 34 1 0 36 2 1 9 2 0 52 2 1 19 2 1 86 chain 43871 chr8 146364022 + 21522597 21523145 MLT2A2 560 + 0 560 64366 400 5 16 73 0 1 70 chain 122938 chr8 146364022 + 21569194 21570568 SVA_D 2077 - 0 2058 30071 520 0 701 800 13 0 14 9 5 18 chain 27190 chr8 146364022 + 21592338 21592740 MER4A1 472 + 0 472 95630 15 0 2 6 6 7 94 11 48 23 7 15 25 0 21 11 3 4 201 chain 14464 chr8 146364022 + 21675626 21675782 L1PA5 6144 + 5983 6139 143005 156 chain 546600 chr8 146364022 + 21683231 21689251 L1PA3long 6157 + 2 6156 1869 150 1 2 622 0 128 253 5 8 1032 0 1 261 2 0 1487 0 1 372 0 1 345 0 1 1490 chain 52702 chr8 146364022 + 21694284 21694960 L1PA8 5853 - 0 670 57187 93 1 0 19 2 1 45 0 1 6 3 1 8 3 2 36 1 0 33 2 0 46 1 0 164 0 2 213 chain 6855 chr8 146364022 + 21742483 21742575 L1MB3 1562 + 1289 1380 178542 62 1 0 29 chain 26468 chr8 146364022 + 21791766 21792060 AluSp 311 + 4 298 98173 294 chain 10496 chr8 146364022 + 21798965 21799093 MER2 342 - 127 255 158262 128 chain 54720 chr8 146364022 + 21802124 21802753 SVA_B 1603 - 6 634 55885 128 0 7 8 7 0 478 1 0 7 chain 20096 chr8 146364022 + 21829733 21829995 AluSq2 311 + 27 291 126842 144 12 14 106 chain 27036 chr8 146364022 + 21878018 21879668 L1MA4 2864 + 1268 2319 96158 190 1245 637 23 1 0 72 0 9 55 8 9 56 chain 4556 chr8 146364022 + 21879740 21879819 L1MA4 2864 - 494 569 200146 21 6 5 10 3 0 39 chain 10021 chr8 146364022 + 21941470 21941631 L1PB1 5432 + 5123 5274 160478 15 1 0 8 1 0 12 5 1 9 2 0 52 2 1 15 1 0 38 chain 115282 chr8 146364022 + 21943891 21945324 LTR12C 1709 + 0 1709 32687 34 0 8 407 7 6 116 13 0 79 0 278 184 1 0 8 2 0 104 0 4 127 1 3 23 4 3 170 1 0 46 1 5 82 1 0 22 chain 5740 chr8 146364022 + 22038317 22038381 MIR 256 - 121 185 187729 64 chain 25904 chr8 146364022 + 22112648 22112946 AluSp 311 + 0 301 100413 91 0 3 207 chain 25690 chr8 146364022 + 22197558 22197869 AluSp 311 - 5 311 101329 174 5 0 132 chain 25839 chr8 146364022 + 22198828 22199126 AluSp 311 + 2 300 100706 298 chain 2503 chr8 146364022 + 22216458 22216541 MER44B 551 - 455 523 233114 24 1 0 4 39 25 15 chain 23961 chr8 146364022 + 22283396 22283703 AluSp 311 - 3 310 110560 29 0 1 101 5 4 172 chain 25432 chr8 146364022 + 22305885 22306182 AluSp 311 - 5 302 102535 297 chain 25423 chr8 146364022 + 22312299 22312587 AluYc 301 + 0 290 102581 120 0 2 168 chain 77783 chr8 146364022 + 22323351 22324263 L1PA6 6164 - 3 927 44623 7 5 0 327 0 1 281 0 12 211 0 4 81 chain 92492 chr8 146364022 + 22339060 22340140 L1PA7 6471 - 1 1092 38817 12 4 6 175 0 8 117 0 1 234 0 1 295 1 0 242 chain 46100 chr8 146364022 + 22347974 22348492 L1PA5 6144 - 7 524 61945 246 1 0 271 chain 21537 chr8 146364022 + 22351649 22351993 THE1A 353 - 0 353 122016 75 9 8 33 7 0 24 9 13 89 1 0 21 11 25 65 chain 29688 chr8 146364022 + 22356670 22356984 AluYb8 318 + 0 314 85871 314 chain 9297 chr8 146364022 + 22372005 22372174 L1MA3 4352 - 3 162 164070 19 6 2 15 1 0 18 8 7 6 1 0 23 3 1 50 1 0 18 chain 24034 chr8 146364022 + 22497374 22497664 AluSp 311 - 12 300 110143 171 1 0 71 2 1 45 chain 25927 chr8 146364022 + 22588700 22589095 Tigger2 2703 + 2272 2663 100311 53 9 0 21 1 2 22 3 0 189 0 2 26 0 5 32 1 3 9 16 14 13 chain 24324 chr8 146364022 + 22607315 22607610 AluSp 311 - 8 303 108520 295 chain 21481 chr8 146364022 + 22657071 22657317 L1PA5 6144 - 3 249 122213 246 chain 26733 chr8 146364022 + 22657317 22657621 L1PA5 6144 + 5584 5888 97212 304 chain 3689 chr8 146364022 + 22662756 22662803 L1MC1 2226 + 2152 2198 212100 32 1 0 14 chain 25794 chr8 146364022 + 22749304 22749604 AluYk4 311 + 0 300 100902 300 chain 3377 chr8 146364022 + 22755945 22755990 MLT1A 405 + 356 405 217538 38 0 4 7 chain 24069 chr8 146364022 + 22800908 22801207 AluSp 311 - 4 300 109929 7 3 0 158 0 1 84 2 1 45 chain 31230 chr8 146364022 + 22808892 22809356 LTR7B 505 - 0 505 82110 51 14 13 79 1 0 82 29 0 24 19 81 57 0 10 108 chain 22200 chr8 146364022 + 22813783 22814153 MSTA 426 + 0 379 119349 15 0 1 82 17 18 36 0 4 50 16 23 108 24 13 11 0 7 11 chain 3307 chr8 146364022 + 22815427 22815463 PABL_B 668 - 398 434 218842 36 chain 9828 chr8 146364022 + 22825156 22825385 L1MB3 1562 + 1361 1555 161459 56 62 27 7 0 6 50 11 6 10 1 0 32 chain 19785 chr8 146364022 + 22826531 22826881 THE1B 368 - 20 368 127861 29 14 13 63 7 15 14 0 4 10 1 0 7 23 16 60 13 9 4 1 0 104 chain 49626 chr8 146364022 + 22842602 22843157 LTR14 556 - 0 556 59299 148 0 1 407 chain 28295 chr8 146364022 + 22890815 22891128 AluYf4 310 + 0 310 91965 132 3 0 178 chain 50620 chr8 146364022 + 22906662 22907277 PABL_A 660 + 1 618 58563 20 0 4 60 6 5 110 1 0 302 0 1 4 1 0 111 chain 129876 chr8 146364022 + 22910724 22912544 PABL_A-int 1935 + 105 1914 28115 28 8 6 57 0 1 4 1 0 54 0 1 40 1 0 37 3 2 4 1 0 70 0 2 289 0 1 161 1 0 23 6 7 5 3 0 59 4 0 32 1 0 127 13 13 196 1 0 17 0 4 116 1 9 50 0 1 205 2 1 109 1 0 18 2 0 15 15 10 10 13 8 17 chain 50135 chr8 146364022 + 22912948 22913607 PABL_A 660 + 0 660 58918 81 22 9 146 2 1 76 0 13 256 5 7 71 chain 117124 chr8 146364022 + 22927449 22928865 LTR12C 1709 - 0 1709 32082 84 1 0 278 0 2 28 0 20 69 0 4 39 0 1 66 3 1 5 1 0 131 0 278 122 13 0 137 0 8 220 2 0 187 1 0 29 chain 8163 chr8 146364022 + 22978809 22978935 MER85 139 + 2 139 170160 42 4 5 37 6 16 37 chain 44189 chr8 146364022 + 22984231 22984887 MER4A 717 + 0 681 63958 253 0 9 6 0 5 67 0 1 49 25 22 140 57 69 55 0 1 4 chain 339 chr8 146364022 + 22990526 22990600 MER83 447 + 0 74 179598 74 chain 21815 chr8 146364022 + 22990600 22990940 MER4A1 472 + 1 339 120961 57 7 6 42 0 1 123 46 45 42 1 0 22 chain 179 chr8 146364022 + 22991953 22991992 MER83 447 + 355 394 179598 39 chain 44182 chr8 146364022 + 22997032 22999435 L1PA16 3655 + 1582 3198 63967 197 23 27 126 1654 853 12 0 1 64 39 46 146 0 1 26 55 56 61 chain 4046 chr8 146364022 + 23009286 23009357 L1MA8 2339 + 542 603 206687 7 8 0 31 2 0 23 chain 4704 chr8 146364022 + 23017395 23017452 MER34 540 + 445 502 198476 57 chain 114771 chr8 146364022 + 23030445 23031865 LTR12C 1709 - 0 1709 32853 481 0 4 105 2 0 8 10 9 94 0 278 200 1 0 72 1 0 137 2 1 53 0 1 50 0 1 107 5 4 40 1 13 51 chain 14281 chr8 146364022 + 23053473 23053710 LOR1b 457 + 35 267 143616 7 13 0 4 0 1 99 0 2 19 29 34 66 chain 33617 chr8 146364022 + 23065438 23065876 THE1B-int 1605 + 0 429 78216 279 9 0 133 0 1 4 1 0 12 chain 16639 chr8 146364022 + 23096336 23096556 MER4A1 472 + 0 221 136558 15 0 2 4 0 1 11 1 0 47 1 0 141 chain 4794 chr8 146364022 + 23101147 23101212 LTR21A 479 + 379 445 197430 29 1 0 14 0 2 21 chain 102032 chr8 146364022 + 23129449 23130684 LTR12C 1709 + 0 1709 36252 258 7 9 424 0 319 61 0 47 106 0 4 178 0 102 201 chain 12030 chr8 146364022 + 23130684 23131555 MLT1B 390 + 124 355 152073 56 699 60 27 1 0 88 chain 23674 chr8 146364022 + 23140035 23140397 THE1B 368 + 2 368 112182 167 1 0 20 8 11 9 1 5 28 9 8 52 13 12 54 chain 256257 chr8 146364022 + 23169498 23172315 L1PA3long 6157 + 3329 6156 15920 55 0 1 1114 0 4 666 0 1 140 0 4 842 chain 7656 chr8 146364022 + 23182528 23182777 MER33 330 + 31 274 173184 27 49 25 36 12 17 4 1 0 39 0 3 13 41 55 7 3 0 17 chain 44828 chr8 146364022 + 23205347 23205926 L1PA6 6164 + 5635 6162 63258 155 52 0 372 chain 542414 chr8 146364022 + 23231467 23237590 L1PA5 6144 - 3 6141 2443 846 0 1 15 0 4 931 0 8 1735 0 1 1386 15 19 57 0 2 173 2 0 541 3 0 290 0 1 4 1 0 124 chain 24158 chr8 146364022 + 23252497 23252779 AluSc 308 + 11 293 109439 282 chain 6679 chr8 146364022 + 23267552 23267634 Tigger3b 1229 + 969 1051 179840 82 chain 34010 chr8 146364022 + 23279629 23280061 LTR3A 482 + 0 442 77602 159 0 9 15 8 10 214 1 0 35 chain 36957 chr8 146364022 + 23346687 23347202 LTR12F 595 + 0 595 73573 102 7 2 25 24 0 14 3 1 15 0 114 115 3 0 207 chain 7470 chr8 146364022 + 23369907 23370011 MER33 330 + 184 287 174343 71 1 0 32 chain 7860 chr8 146364022 + 23370965 23371069 MER85 139 + 23 139 171939 62 0 14 22 2 0 18 chain 22054 chr8 146364022 + 23393134 23393496 THE1B 368 - 0 368 120004 56 3 4 68 0 8 18 49 45 46 5 3 6 0 3 111 chain 19578 chr8 146364022 + 23400906 23401864 Tigger3b 1229 + 548 1162 128438 13 0 215 88 0 1 8 3 1 69 644 85 83 20 21 30 chain 5613 chr8 146364022 + 23422936 23423002 MER41A 554 + 400 466 188954 66 chain 4975 chr8 146364022 + 23457592 23457651 U4 144 - 85 144 195413 59 chain 32832 chr8 146364022 + 23462161 23462708 L1PB1 5432 + 4914 5420 79489 189 25 15 20 1 0 9 1 0 13 4 0 7 1 0 53 2 1 16 1 0 43 1 0 16 3 0 6 20 10 15 2 0 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 16 chain 42434 chr8 146364022 + 23488490 23489213 L1PB1 5432 - 41 691 66103 21 1 0 24 2 0 15 1 0 4 2 0 19 26 12 16 1 0 44 1 0 15 2 1 50 3 1 10 5 1 11 1 0 13 1 0 20 59 11 4 0 1 91 7 6 198 0 6 56 chain 28721 chr8 146364022 + 23491351 23491661 AluYa5 310 - 5 310 90240 208 5 0 97 chain 4611 chr8 146364022 + 23495360 23495425 MLT1D 503 + 33 99 199502 35 1 2 29 chain 552105 chr8 146364022 + 23502706 23508732 L1PA2 6032 - 4 6032 1180 2211 0 1 430 0 1 1442 2 1 542 0 1 1399 chain 18429 chr8 146364022 + 23518554 23518870 MER1B 344 - 0 286 131692 59 4 14 167 63 23 23 chain 30534 chr8 146364022 + 23573815 23574224 L1PA8 5853 - 0 402 83364 93 1 0 14 13 12 45 2 1 9 7 6 65 2 0 48 1 0 109 chain 5346 chr8 146364022 + 23597037 23597167 L1MB3 1562 + 610 732 191578 28 0 1 4 9 0 36 2 0 5 31 33 15 chain 19616 chr8 146364022 + 23646214 23646429 L1PA3long 6157 - 1 216 128345 215 chain 3854 chr8 146364022 + 23672892 23672938 L1M4c 1769 + 359 405 209563 46 chain 30867 chr8 146364022 + 23673807 23674233 LTR21A 479 - 0 479 82740 24 29 30 166 0 3 153 0 50 31 1 0 22 chain 62735 chr8 146364022 + 23675205 23675895 L1PA3long 6157 - 5 695 51570 690 chain 16247 chr8 146364022 + 23687800 23688127 L1PB1 5432 - 44 329 137624 18 1 0 24 2 0 15 1 0 4 2 0 30 13 0 11 6 5 22 6 0 18 5 0 4 1 0 16 2 1 52 2 0 9 20 15 9 1 0 21 1 0 11 chain 22784 chr8 146364022 + 23774380 23774844 L1PB1 5432 - 28 458 116657 13 1 0 21 9 8 16 2 0 14 8 5 19 19 8 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 9 1 0 21 3 0 9 9 8 126 chain 120049 chr8 146364022 + 23801239 23803026 L1PB3 3668 - 48 1823 31043 6 1 0 12 10 7 12 3 2 12 5 1 26 10 14 20 3 5 8 1 0 12 22 6 85 5 4 97 1 0 103 1 2 106 1 5 70 4 1 17 0 2 306 13 12 10 0 1 171 6 5 150 0 1 200 13 16 26 0 3 49 0 14 8 16 2 166 chain 29068 chr8 146364022 + 23812264 23812696 MLT2A1 477 - 64 477 88686 7 6 0 8 9 0 13 1 5 183 21 9 15 0 4 26 0 1 54 2 1 87 chain 19807 chr8 146364022 + 23843964 23844230 AluSp 311 - 9 270 127790 20 4 0 129 15 15 10 1 0 87 chain 363190 chr8 146364022 + 23904385 23909591 L1PA8 5853 + 500 5853 11286 23 119 94 9 0 16 7 1 0 6 11 11 63 7 0 7 0 11 10 0 1 6 2 1 11 3 0 7 9 12 229 4 45 67 0 3 91 4 8 55 0 1 255 0 4 331 0 2 92 2 7 31 1 2 8 2 0 7 2 0 19 7 5 146 12 0 68 0 4 207 0 6 47 0 4 75 4 9 142 2 1 22 18 19 30 0 5 25 4 5 47 0 1 15 1 5 15 0 12 61 0 1 5 5 30 286 1 0 33 3 0 10 1 7 89 6 8 203 6 9 85 5 3 51 0 1 17 0 4 33 2 0 5 0 2 120 0 3 99 5 4 436 8 12 274 0 5 124 0 4 16 0 2 71 0 1 9 1 5 13 1 5 225 2 1 6 0 7 212 1 0 38 1 6 70 14 12 54 1 0 14 5 4 91 chain 13216 chr8 146364022 + 23934509 23934671 U1 164 - 0 164 147402 22 0 1 133 0 1 7 chain 3846 chr8 146364022 + 23951479 23951532 L1MB1 2102 + 1932 1983 209689 10 2 0 41 chain 9143 chr8 146364022 + 23966120 23966219 L1PA5 6144 - 219 318 164844 99 chain 24131 chr8 146364022 + 23982557 23982838 L1PA7 6471 + 6180 6461 109582 281 chain 15893 chr8 146364022 + 24015734 24016000 L1MB3 1562 - 146 409 138678 12 23 25 28 1 0 104 3 0 46 13 12 36 chain 466641 chr8 146364022 + 24016066 24021735 L1PA7 6471 - 10 5710 8167 622 0 1 235 0 1 625 0 1 64 0 1 150 1 0 423 1 2 13 4 7 312 4 0 168 2 0 19 0 4 231 0 2 7 0 3 540 9 13 127 0 4 15 4 0 207 2 0 30 0 2 896 8 12 158 3 0 18 0 1 56 0 3 182 0 1 68 1 2 43 0 10 421 chain 8683 chr8 146364022 + 24022642 24022754 MLT2A2 560 + 443 560 167291 85 0 1 21 0 4 6 chain 8584 chr8 146364022 + 24038334 24038437 L1PA3long 6157 + 6055 6157 167824 82 1 0 20 chain 18741 chr8 146364022 + 24078470 24078703 L1PA8A 6298 - 7 489 130853 215 0 249 18 chain 45058 chr8 146364022 + 24078772 24079358 L1PA8A 6298 + 5159 5762 62979 46 1 0 6 0 1 183 1 0 77 0 4 13 0 6 78 0 3 80 0 1 4 0 3 28 0 1 69 chain 34074 chr8 146364022 + 24093019 24093466 LTR2 463 + 0 463 77504 106 21 24 57 3 0 31 0 15 148 0 1 81 chain 414905 chr8 146364022 + 24095295 24100259 Harlequin-int 5206 + 125 5063 9670 163 27 13 181 0 1 40 4 5 115 2 0 25 8 5 4 0 1 529 0 3 374 0 1 526 0 4 2397 27 10 20 1 0 6 5 6 5 1 0 234 0 2 5 2 0 263 chain 5634 chr8 146364022 + 24100259 24100324 LTR2 463 + 315 380 188716 65 chain 7269 chr8 146364022 + 24100324 24100406 LTR2 463 + 381 463 175658 82 chain 330599 chr8 146364022 + 24112070 24115662 L1PA2 6032 - 0 3596 12180 1796 0 4 626 0 1 1036 1 0 133 chain 67495 chr8 146364022 + 24119450 24120273 L1PA7 6471 - 11 855 49452 712 4 24 22 1 0 41 0 2 43 chain 2865 chr8 146364022 + 24132680 24132710 L1PA8 5853 + 5534 5564 227589 30 chain 8212 chr8 146364022 + 24132711 24132824 L1PA8 5853 + 5564 5675 169876 43 3 1 67 chain 13058 chr8 146364022 + 24132847 24133014 L1PA8 5853 + 5688 5853 148002 54 1 0 23 1 0 88 chain 9485 chr8 146364022 + 24136721 24136834 L1PA8 5853 + 5741 5853 163139 19 1 0 93 chain 140863 chr8 146364022 + 24140612 24142481 L1PA10 4194 + 2277 4146 26015 167 0 1 89 0 2 92 1 2 33 1 5 6 0 17 9 29 0 114 1 2 15 0 3 294 1 4 112 14 25 66 1 3 77 0 4 19 0 3 473 16 8 15 12 0 173 9 6 30 chain 20132 chr8 146364022 + 24143067 24143305 AluY 311 + 10 249 126739 121 1 2 116 chain 17864 chr8 146364022 + 24160296 24160502 L1PA5 6144 - 12 218 133204 206 chain 22316 chr8 146364022 + 24161088 24161382 L1PA10 4194 - 34 324 118847 10 1 0 34 3 0 30 5 4 174 0 1 37 chain 113205 chr8 146364022 + 24216864 24218287 L1PA7 6471 + 5022 6465 33314 329 4 7 149 0 3 89 0 4 21 2 3 71 0 1 108 1 0 49 0 3 178 0 1 129 1 11 231 1 0 49 4 0 7 chain 10579 chr8 146364022 + 24226387 24226578 L1PB2 3958 - 120 291 157915 63 1 0 21 41 23 50 1 0 14 chain 39375 chr8 146364022 + 24229845 24230339 L1PA7 6471 + 5968 6466 70211 231 7 11 256 chain 89224 chr8 146364022 + 24234731 24235868 L1PA7 6471 + 5319 6468 39919 83 0 2 195 0 4 11 2 0 71 13 15 9 1 0 39 0 1 332 0 4 79 0 4 130 0 4 14 5 0 12 2 1 139 chain 35560 chr8 146364022 + 24238676 24239088 L1PA7 6471 - 6 422 75466 12 0 4 400 chain 18275 chr8 146364022 + 24239956 24240296 L1PB1 5432 + 5114 5422 132138 15 6 5 13 1 0 9 7 3 8 2 0 52 1 0 17 1 0 44 1 0 16 3 0 6 16 6 17 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 6565 chr8 146364022 + 24244307 24244386 LTR22A 463 - 0 83 180745 30 0 4 49 chain 36725 chr8 146364022 + 24258165 24258587 L1PA4 6152 - 13 436 73919 135 0 1 8 0 1 182 1 0 96 chain 7528 chr8 146364022 + 24265472 24265570 L1PB2 3958 + 3579 3676 173984 38 1 0 59 chain 98796 chr8 146364022 + 24280620 24281852 L1PA7 6471 + 5136 6465 37072 136 5 6 340 1 4 467 0 1 105 6 99 13 2 0 11 4 6 125 1 0 16 chain 552779 chr8 146364022 + 24306198 24312312 L1PA3long 6157 - 15 6151 1098 43 0 9 80 1 8 688 0 4 1123 0 1 764 0 1 2540 0 1 42 1 0 4 0 1 636 2 1 190 chain 4247 chr8 146364022 + 24334781 24334969 L1MC3 1789 - 287 455 203903 9 3 0 12 52 43 14 53 45 45 chain 104374 chr8 146364022 + 24353148 24354470 THE1B-int 1605 + 250 1599 35646 180 1 26 219 0 3 639 2 3 16 2 1 98 1 0 164 chain 24197 chr8 146364022 + 24354476 24354831 THE1B 368 + 0 368 109236 44 7 23 99 18 16 105 7 6 75 chain 57881 chr8 146364022 + 24360854 24361534 L1PA7 6471 + 5775 6455 54044 680 chain 54845 chr8 146364022 + 24381647 24382278 L1PA4 6152 - 9 640 55801 631 chain 23559 chr8 146364022 + 24409927 24410413 L1PB1 5432 - 5 447 112804 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 7 4 30 20 7 10 1 0 5 0 3 36 17 16 51 2 0 10 5 1 11 1 0 9 1 0 21 13 0 10 12 11 111 chain 45668 chr8 146364022 + 24413555 24414076 L1PA4 6152 - 17 548 62338 138 0 9 244 0 1 139 chain 418292 chr8 146364022 + 24416742 24421362 L1PA3long 6157 + 533 6157 9580 699 0 1 1456 2 1 976 2 1005 1343 0 1 142 chain 9945 chr8 146364022 + 24422501 24422623 MER85 139 + 6 138 160858 83 0 10 39 chain 45656 chr8 146364022 + 24423402 24423941 L1PA6 6164 - 19 558 62348 539 chain 115370 chr8 146364022 + 24435147 24436905 L1PA7 6471 + 5034 6452 32652 608 6 19 39 0 2 147 0 1 97 27 6 140 0 1 44 0 1 106 334 0 190 3 0 17 chain 7755 chr8 146364022 + 24456175 24456272 MER85 139 - 0 107 172572 40 0 10 57 chain 212578 chr8 146364022 + 24479003 24481948 L1PB1 5432 + 2519 5422 18322 5 0 2 79 10 11 43 0 1 88 1 0 113 3 2 132 0 1 102 0 1 40 0 1 135 1 0 5 0 1 423 1 2 311 24 5 19 0 5 409 8 12 62 0 3 94 1 3 160 16 17 22 10 12 49 0 1 71 16 3 19 2 1 109 0 1 4 1 0 5 17 11 28 1 0 5 1 0 5 23 20 41 0 1 6 2 1 15 1 0 43 2 1 16 13 1 30 2 0 5 1 0 13 2 0 25 1 0 21 1 0 13 1 0 18 chain 8774 chr8 146364022 + 24494501 24494600 L1PA3long 6157 + 6058 6157 166799 99 chain 11582 chr8 146364022 + 24496709 24496870 THE1C 375 - 207 368 153967 18 0 3 17 8 5 118 chain 3457 chr8 146364022 + 24518434 24518471 L1PA6 6164 - 3 40 216037 37 chain 7905 chr8 146364022 + 24529714 24529815 MER41A 554 + 434 534 171618 33 1 0 67 chain 28402 chr8 146364022 + 24539607 24539938 L1PA7 6471 - 3 329 91569 7 4 0 146 1 0 173 chain 26693 chr8 146364022 + 24542512 24542802 L1PA2 6032 + 5740 6032 97343 116 0 1 11 0 1 163 chain 4512 chr8 146364022 + 24561478 24561534 LTR43B 570 - 302 358 200655 56 chain 221818 chr8 146364022 + 24637737 24640186 L1PA3long 6157 + 3700 6157 17763 657 0 4 1743 0 4 49 chain 27516 chr8 146364022 + 24678908 24679267 THE1A 353 + 0 353 94613 59 11 6 44 6 5 239 chain 118794 chr8 146364022 + 24679267 24680810 THE1A-int 1579 + 0 1579 31492 153 0 3 13 3 4 208 7 15 97 0 1 138 5 13 12 0 1 5 15 29 107 8 0 181 0 3 130 15 19 441 0 1 5 chain 553324 chr8 146364022 + 24697086 24703232 L1PA3long 6157 + 6 6157 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431 151938 14 19 23 34 11 0 23 7 6 4 1 0 46 61 97 63 0 1 15 chain 6484 chr8 146364022 + 24849082 24849166 LTR72B 493 - 47 143 181367 58 1 13 25 chain 24752 chr8 146364022 + 24849187 24849497 LTR45B 484 - 160 470 106160 310 chain 271184 chr8 146364022 + 24869612 24872645 L1PA4 6152 + 3116 6151 15131 393 0 1 429 1 2 414 1 3 1268 3 0 265 0 1 259 chain 10722 chr8 146364022 + 24903787 24903938 MLT1A0 366 + 0 153 157313 47 0 1 39 6 7 59 chain 37063 chr8 146364022 + 24914810 24915356 L1PA15 4387 - 203 747 73440 14 0 10 30 1 0 26 1 0 171 1 0 23 27 24 51 9 5 18 3 1 171 chain 4191 chr8 146364022 + 24920458 24920506 MIR 256 + 64 112 204667 48 chain 18774 chr8 146364022 + 24927653 24927969 L1MA2 4263 + 3809 4110 130759 76 5 0 10 3 0 7 12 15 41 9 7 93 7 0 46 1 0 6 chain 4076 chr8 146364022 + 24951068 24951118 MER41A 554 + 416 466 206253 50 chain 25157 chr8 146364022 + 24958534 24958890 THE1A 353 - 0 353 103971 64 2 0 91 1 0 88 2 1 24 24 25 60 chain 120512 chr8 146364022 + 24959976 24961402 SVA_B 1603 + 49 1597 30872 622 0 77 71 0 82 35 0 9 8 9 1 21 45 7 615 chain 15057 chr8 146364022 + 24975071 24975254 AluY 311 + 127 305 141149 172 5 0 6 chain 29116 chr8 146364022 + 24979585 24979897 AluYa5 310 - 0 310 88480 184 2 0 126 chain 4597 chr8 146364022 + 24986910 24986968 L1PREC2 3366 + 540 598 199672 58 chain 22764 chr8 146364022 + 24997215 24997557 THE1C 375 - 0 375 116759 101 1 0 20 14 52 16 15 7 40 0 4 135 chain 10323 chr8 146364022 + 25002535 25002673 MSTA 426 - 0 146 159017 110 8 16 20 chain 5470 chr8 146364022 + 25003899 25003980 MADE1 96 - 0 96 190303 24 1 0 13 1 17 42 chain 41927 chr8 146364022 + 25011493 25012189 L1PB1 5432 - 9 647 66724 6 1 0 13 1 0 13 1 0 21 1 0 26 25 20 16 18 7 5 1 0 16 1 0 43 1 0 16 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 5 5 3 16 37 11 200 1 3 115 chain 62550 chr8 146364022 + 25014902 25016185 L1PA15 4387 - 43 989 51652 14 2 0 14 2 0 46 17 14 26 6 13 17 8 3 12 2 1 24 1 4 26 1 0 21 6 5 84 319 0 87 1 0 42 4 2 23 0 4 26 26 3 18 0 2 45 1 0 206 6 14 150 chain 130352 chr8 146364022 + 25021829 25023375 LTR12C 1709 + 0 1709 28005 309 0 1 4 1 0 177 0 1 177 7 168 274 1 0 5 3 1 107 0 4 481 chain 51342 chr8 146364022 + 25049296 25049886 L1PA5 6144 - 9 599 58071 71 1 4 222 4 0 135 0 1 157 chain 9542 chr8 146364022 + 25083242 25083525 L1MB2 1706 + 1411 1679 162870 71 16 20 27 125 106 44 chain 56023 chr8 146364022 + 25099006 25099674 L1PA7 6471 + 5798 6465 55107 333 1 0 334 chain 15265 chr8 146364022 + 25128308 25128506 MER2 342 - 26 226 140584 18 3 5 177 chain 9764 chr8 146364022 + 25147735 25147935 MER30 238 - 0 238 161773 53 12 24 8 6 0 27 4 0 8 4 22 50 13 31 15 chain 21187 chr8 146364022 + 25163942 25164208 AluYc 301 + 2 270 123252 118 13 15 135 chain 34527 chr8 146364022 + 25182166 25182569 L1PA4 6152 - 0 406 76867 6 0 5 143 7 5 247 chain 3875 chr8 146364022 + 25185310 25185408 L1MA8 2339 + 2164 2257 209226 17 30 27 25 2 0 24 chain 27433 chr8 146364022 + 25215613 25216000 THE1C 375 - 0 375 94872 26 1 0 32 16 0 85 1 3 23 0 3 16 5 4 6 0 1 176 chain 20922 chr8 146364022 + 25217007 25217314 MER1B 344 + 33 344 124202 8 2 0 115 5 6 54 4 0 46 5 14 68 chain 76090 chr8 146364022 + 25236306 25237309 MER11A 1151 - 0 1151 45426 229 0 9 54 5 38 12 17 15 47 0 4 56 2 5 39 10 15 60 1 0 30 0 1 91 5 6 146 4 0 116 0 99 79 chain 30594 chr8 146364022 + 25283785 25284164 MLT2A1 477 - 94 477 83209 209 1 5 169 chain 27833 chr8 146364022 + 25297575 25297873 AluYa5 310 - 12 310 93581 298 chain 4588 chr8 146364022 + 25330624 25330767 L1MA7 2200 - 288 432 199764 9 0 1 25 60 62 10 5 3 34 chain 6493 chr8 146364022 + 25340413 25340544 MER2 342 + 154 294 181310 38 0 9 25 37 37 31 chain 11093 chr8 146364022 + 25354051 25354338 L1MA9 1812 + 1257 1561 155826 51 22 25 36 25 47 5 1 0 36 1 0 9 27 25 33 1 0 4 1 0 7 7 5 21 chain 3606 chr8 146364022 + 25378540 25378585 LOR1b 457 - 378 445 213539 30 0 22 15 chain 525827 chr8 146364022 + 25380254 25387242 L1PA7 6471 + 0 6461 4597 94 0 7 311 16 5 381 0 1 469 6 5 119 0 1 162 0 1 273 0 3 805 7 0 167 0 1 10 1 0 420 1 91 67 326 0 58 1 6 26 2 3 6 1 0 11 1 0 46 0 4 276 5 0 181 0 2 2 311 0 96 0 6 201 1 0 349 0 8 220 5 1 194 0 1 4 10 5 370 0 9 112 0 1 25 1 5 232 0 2 606 chain 26351 chr8 146364022 + 25397224 25397520 AluYk4 311 - 15 311 98614 296 chain 20272 chr8 146364022 + 25431512 25431882 THE1D 372 + 0 372 126309 15 15 16 25 16 7 118 55 65 126 chain 518357 chr8 146364022 + 25466888 25472990 L1PA5 6144 - 0 6144 5343 338 0 1 1751 0 1 318 0 5 280 0 17 581 0 1 482 0 1 62 3 1 568 1 2 564 9 0 1003 3 15 18 1 15 120 chain 538977 chr8 146364022 + 25512458 25518460 L1PA3long 6157 - 0 6151 2996 141 0 4 482 1 0 216 0 4 1883 5 1 820 0 15 1012 0 1 317 0 2 353 1 129 771 chain 3543 chr8 146364022 + 25577249 25577297 L1ME1 1623 - 983 1029 214667 27 2 0 19 chain 176071 chr8 146364022 + 25578044 25580038 L1PA4 6152 - 9 2004 21349 134 0 6 6 6 0 522 0 1 1326 chain 228808 chr8 146364022 + 25581400 25585104 L1PA14 3548 - 83 3437 17367 10 6 0 12 0 4 25 2 1 11 11 9 14 57 50 108 1 0 84 1 0 6 2 0 10 8 6 5 2 0 39 0 6 58 22 18 36 2 0 8 17 12 151 0 4 85 23 10 52 0 1 94 8 7 62 18 19 62 0 1 119 74 36 104 6 7 135 297 0 85 1 4 342 0 5 9 0 4 8 5 18 50 2 1 54 0 1 173 1 0 173 1 3 624 13 12 107 0 1 11 2 0 29 11 9 26 2 1 17 1 0 69 4 0 37 chain 553566 chr8 146364022 + 25587859 25593870 L1PA2 6032 - 4 6032 995 766 1 0 1761 0 4 3159 0 14 324 chain 22985 chr8 146364022 + 25617929 25618211 L1PA7 6471 + 4633 4913 115693 35 0 4 235 6 0 6 chain 75198 chr8 146364022 + 25618216 25619122 L1PA7 6471 + 4924 5842 45924 443 1 0 52 4 5 191 1 4 16 0 10 65 1 0 132 chain 28478 chr8 146364022 + 25619125 25619431 AluYa5 310 - 6 310 91276 211 2 0 93 chain 51395 chr8 146364022 + 25619438 25620050 L1PA7 6471 + 5844 6456 58033 612 chain 382005 chr8 146364022 + 25627324 25632675 L1PB1 5432 + 58 5413 10697 43 5 12 265 1 0 38 9 11 174 0 7 144 0 4 545 1 0 93 2 1 7 8 0 127 16 20 37 10 17 33 0 2 66 0 2 562 0 1 32 0 1 59 2 4 52 3 1 80 0 2 339 15 17 156 0 2 5 11 10 134 4 5 139 5 10 219 38 21 39 1 2 116 4 13 170 0 1 89 1 2 5 0 1 320 8 12 299 4 0 248 9 28 144 0 1 5 2 1 41 36 20 24 26 20 9 2 0 53 2 1 10 7 6 44 2 1 9 30 17 19 8 5 14 6 4 20 1 0 21 1 0 13 1 0 9 chain 54113 chr8 146364022 + 25650672 25651268 L1PA3long 6157 + 5561 6157 56287 596 chain 23724 chr8 146364022 + 25663953 25664305 THE1D 372 + 0 369 111913 139 38 55 40 0 1 105 1 0 29 chain 21873 chr8 146364022 + 25672961 25673275 AluY 311 + 0 308 120735 10 1 0 123 20 6 25 0 13 91 0 2 32 6 0 6 chain 479803 chr8 146364022 + 25682766 25688890 L1PA8A 6298 - 7 6168 7737 105 0 1 177 0 3 289 0 1 116 1 4 56 12 16 31 1 3 126 2 0 212 1 0 330 3 0 19 11 10 676 2 1 243 0 1 360 0 5 13 1 0 10 0 7 6 12 0 12 0 1 7 1 2 49 1 9 86 0 3 479 3 2 192 0 4 47 5 22 32 0 1 123 5 9 52 10 0 198 10 13 92 2 12 657 0 4 221 4 0 12 10 28 666 4 2 11 3 1 14 2 0 76 6 0 23 1 0 4 7 6 33 56 47 10 1 0 4 2 0 15 2 0 11 31 31 17 chain 40295 chr8 146364022 + 25733334 25733937 L1PA8 5853 + 5251 5853 68886 151 14 15 119 3 1 27 1 0 44 2 0 69 0 6 7 1 0 50 32 30 83 chain 19947 chr8 146364022 + 25743034 25743392 THE1B 368 + 0 368 127314 111 11 12 46 43 45 14 6 14 54 1 0 4 0 1 5 8 7 55 chain 3984 chr8 146364022 + 25748200 25748315 Tigger4a 237 - 123 237 207635 18 48 48 26 1 0 22 chain 5422 chr8 146364022 + 25758253 25758311 L1PA3long 6157 + 6099 6157 190790 58 chain 3610 chr8 146364022 + 25787857 25787902 MIRc 230 + 66 111 213477 45 chain 15617 chr8 146364022 + 25887903 25888078 L1PA4 6152 + 5953 6128 139529 175 chain 12549 chr8 146364022 + 25914209 25914365 L1PA7 6471 - 7 165 150045 6 0 2 150 chain 6630 chr8 146364022 + 25930323 25930438 L1PA15 4387 - 60 170 180238 12 3 1 44 13 10 43 chain 34290 chr8 146364022 + 25950212 25950665 MER4A1 472 - 14 472 77225 214 8 9 34 6 8 92 0 2 99 chain 9809 chr8 146364022 + 25965481 25965647 THE1B 368 + 1 164 161550 25 0 1 44 5 0 40 0 3 6 19 17 27 chain 15565 chr8 146364022 + 25988147 25988514 MSTD 398 + 28 396 139683 87 95 84 14 26 38 30 12 13 33 1 0 69 chain 18119 chr8 146364022 + 25989060 25989309 L1PA8 5853 + 5609 5853 132543 69 2 1 12 1 0 49 2 1 10 1 0 9 4 3 90 chain 22939 chr8 146364022 + 25997844 25998213 THE1C 375 - 0 375 115913 26 1 0 82 63 73 69 3 0 125 chain 2847 chr8 146364022 + 26003590 26003620 MER82 654 + 441 471 227903 30 chain 11865 chr8 146364022 + 26015758 26015907 THE1A-int 1579 - 0 148 152767 16 2 1 131 chain 23296 chr8 146364022 + 26015933 26016268 THE1A 353 - 12 353 114225 247 15 14 12 0 3 10 6 7 14 0 3 31 chain 3918 chr8 146364022 + 26018119 26018166 Tigger5 388 + 179 226 208580 47 chain 4411 chr8 146364022 + 26040336 26040410 MLT1A0 366 + 0 73 201792 19 12 11 43 chain 33167 chr8 146364022 + 26058026 26058498 MER1A 529 + 27 529 78958 53 23 63 6 7 0 107 4 0 255 1 2 16 chain 46768 chr8 146364022 + 26067415 26068026 PABL_A 660 + 0 619 61401 128 1 2 86 2 0 5 0 2 180 0 7 55 10 8 103 0 2 41 chain 26958 chr8 146364022 + 26075939 26076298 THE1A 353 + 0 353 96415 109 2 1 92 1 0 7 13 9 135 chain 10751 chr8 146364022 + 26090512 26090694 L1MA4A 3247 - 68 243 157194 31 24 18 19 6 5 102 chain 56350 chr8 146364022 + 26181941 26182653 THE1A-int 1579 + 804 1567 54934 79 4 7 423 0 1 4 1 0 73 1 49 127 chain 550953 chr8 146364022 + 26253128 26259089 L1PA2 6032 + 2 6031 1322 1109 0 2 2047 0 5 7 0 52 1008 0 4 1776 1 6 13 chain 27992 chr8 146364022 + 26286219 26286587 L1PA16 3655 + 3222 3585 93026 69 2 0 287 3 0 7 chain 3931 chr8 146364022 + 26294508 26294580 MADE1 96 + 2 90 208392 35 11 27 26 chain 6843 chr8 146364022 + 26332652 26332731 L1MC2 1988 - 353 432 178638 79 chain 24731 chr8 146364022 + 26356200 26356583 L1PREC2 3366 + 2474 2854 106272 134 20 21 116 10 8 46 14 13 38 1 0 4 chain 21951 chr8 146364022 + 26411414 26411694 AluSg7 307 - 9 298 120425 68 0 7 47 1 2 42 0 1 122 chain 75651 chr8 146364022 + 26533371 26534198 L1PA3long 6157 - 1 828 45686 827 chain 59434 chr8 146364022 + 26534198 26534844 L1PA3long 6157 + 4685 5331 52876 646 chain 73366 chr8 146364022 + 26540653 26541580 SVA_A 1864 - 3 1344 46852 244 0 1 289 38 379 63 1 0 44 16 89 65 3 0 150 0 3 14 chain 34590 chr8 146364022 + 26546077 26546538 L1PA8 5853 - 6 468 76767 40 9 16 31 1 0 19 2 1 51 1 0 10 2 1 70 2 0 46 1 0 46 0 1 130 chain 4202 chr8 146364022 + 26588864 26588937 MER53 195 + 5 79 204511 22 9 10 42 chain 4766 chr8 146364022 + 26590726 26590819 MER8 282 + 0 132 197744 42 25 64 26 chain 37132 chr8 146364022 + 26636052 26636468 L1PA5 6144 + 5725 6141 73335 416 chain 31170 chr8 146364022 + 26638148 26638645 MER1A 529 + 11 523 82221 42 36 40 22 17 10 17 0 17 124 0 1 170 18 19 8 1 0 42 chain 13606 chr8 146364022 + 26702340 26702540 MER30 238 - 0 238 145953 48 3 0 52 2 0 6 4 0 6 0 28 59 0 19 20 chain 39355 chr8 146364022 + 26704304 26704745 L1PA3long 6157 + 5715 6156 70246 441 chain 15172 chr8 146364022 + 26713044 26713262 L1PA8 5853 + 5638 5853 140847 13 0 1 29 1 0 6 2 1 52 3 2 18 1 0 93 chain 29425 chr8 146364022 + 26729185 26729571 L1PA8 5853 - 0 377 86963 93 2 0 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 39 1 0 49 chain 13048 chr8 146364022 + 26734535 26734745 L1PA8 5853 + 5638 5853 148037 39 3 2 13 14 12 36 2 1 21 1 0 73 0 10 8 chain 21931 chr8 146364022 + 26740990 26741251 L1PA7 6471 + 6208 6469 120495 112 2 0 136 0 2 11 chain 10267 chr8 146364022 + 26751065 26751207 L1MA5A 2387 + 1946 2087 159297 87 1 0 54 chain 20957 chr8 146364022 + 26772282 26772651 THE1B 368 - 0 368 124075 74 1 0 101 31 24 23 0 3 2 4 0 21 2 0 6 0 3 25 32 39 47 chain 543347 chr8 146364022 + 26792471 26798604 L1PA4 6152 - 19 6151 2290 130 1 0 2083 0 1 1523 0 1 1340 3 2 316 1 0 736 chain 295737 chr8 146364022 + 26801190 26805668 L1PB1 5432 - 21 5375 13658 7 1 0 13 1 0 21 1 0 16 79 60 14 1 0 43 2 1 15 2 1 50 30 23 9 1 0 24 1 0 11 3 0 315 46 0 21 0 35 40 0 1 70 5 7 71 5 15 101 0 7 96 1 0 153 0 6 50 0 1 182 0 3 191 0 1 15 0 2 148 4 5 60 16 17 248 1 0 136 0 3 5 2 0 6 0 3 7 4 8 159 1 1179 27 1 3 17 0 1 176 317 0 110 12 0 7 1 0 27 0 1 522 0 3 85 0 6 67 0 1 74 0 1 64 1 0 49 0 3 86 0 17 147 0 1 184 chain 16684 chr8 146364022 + 26820333 26820553 L1PA16 3655 - 76 295 136455 158 5 4 57 chain 12066 chr8 146364022 + 26833724 26833877 L1PA16 3655 + 3314 3467 151918 153 chain 19199 chr8 146364022 + 26839097 26839343 L1PA7 6471 + 6215 6454 129530 97 6 0 7 1 0 135 chain 24640 chr8 146364022 + 26888222 26888566 THE1B 368 + 2 368 106786 42 5 20 99 1 0 143 5 13 49 chain 540515 chr8 146364022 + 26915369 26921500 L1PA5 6144 - 4 6141 2731 326 0 1 680 0 1 135 0 3 837 4 0 9 0 4 1802 0 1 9 0 1 1464 1 0 137 1 0 553 0 1 173 chain 11114 chr8 146364022 + 26950165 26950541 THE1B 368 - 0 368 155762 40 41 24 61 70 74 16 13 12 18 16 17 15 37 44 34 2 0 13 chain 36723 chr8 146364022 + 26958717 26959223 L1PA8 5853 + 5354 5853 73922 210 1 0 46 2 0 49 30 28 53 2 1 21 1 0 91 chain 22093 chr8 146364022 + 26962835 26963098 AluY 311 + 37 301 119821 18 1 2 66 1 0 9 0 1 168 chain 25983 chr8 146364022 + 26968749 26969571 L1PB1 5432 - 10 474 100082 18 1 0 13 1 0 21 1 0 22 43 25 15 29 16 12 1 0 58 12 11 26 0 1 17 2 0 8 5 1 12 1 0 12 1 0 16 330 15 145 chain 567013 chr8 146364022 + 26971135 26977162 L1HS 6032 + 4 6032 87 1147 0 1 4880 chain 5130 chr8 146364022 + 26979817 26979882 L1MB2 1706 - 12 82 193777 18 0 5 47 chain 27481 chr8 146364022 + 26982283 26982657 THE1C 375 - 1 375 94715 24 1 0 163 3 4 6 1 0 105 8 9 63 chain 19452 chr8 146364022 + 27054203 27054433 L1PA6 6164 - 12 242 128813 230 chain 16175 chr8 146364022 + 27070097 27070307 L1PA8 5853 + 5646 5853 137827 36 1 0 58 2 1 19 1 0 93 chain 4251 chr8 146364022 + 27082382 27082437 MADE1 96 + 0 96 203856 17 0 41 38 chain 52264 chr8 146364022 + 27109326 27109903 L1PA2 6032 - 0 577 57450 577 chain 15837 chr8 146364022 + 27116660 27116997 L1PB1 5432 - 10 317 138834 18 1 0 12 1 0 22 1 0 17 0 1 6 2 0 10 14 11 17 40 27 45 1 0 15 2 1 52 18 12 12 1 0 6 1 0 23 chain 42482 chr8 146364022 + 27132746 27133217 L1PA3long 6157 - 4 474 66034 13 1 0 457 chain 35912 chr8 146364022 + 27136441 27136890 MER4A1 472 - 0 472 74999 40 0 1 179 0 22 230 chain 24356 chr8 146364022 + 27140830 27141133 AluSp 311 - 13 311 108341 7 7 0 166 0 2 123 chain 6491 chr8 146364022 + 27148701 27149151 L1MB7 1623 + 1003 1419 181322 34 1 0 4 6 9 46 73 71 20 246 212 20 chain 19741 chr8 146364022 + 27170506 27170890 THE1D 372 + 0 372 127978 15 0 2 12 1 0 24 9 0 21 3 0 6 13 17 10 2 0 77 64 65 82 10 6 35 chain 2938 chr8 146364022 + 27172557 27172588 LTR40b 463 + 415 446 226378 31 chain 24334 chr8 146364022 + 27176887 27177182 AluY 311 + 10 304 108451 123 1 0 171 chain 7117 chr8 146364022 + 27195845 27196056 L1PB1 5432 + 5239 5427 176632 41 1 0 13 84 67 10 1 0 22 2 1 11 1 0 18 2 0 5 chain 23728 chr8 146364022 + 27210087 27210441 THE1B 368 + 0 368 111890 44 5 20 104 1 0 4 9 8 16 1 3 88 7 6 75 chain 44198 chr8 146364022 + 27233964 27234523 MER41A 554 + 0 554 63948 305 13 3 160 0 5 81 chain 10094 chr8 146364022 + 27241863 27242048 L1MA5 2750 - 1619 1803 160110 39 27 26 82 8 9 5 1 0 23 chain 4950 chr8 146364022 + 27283159 27283383 L1MC1 2226 - 44 242 195701 27 8 7 13 20 10 4 1 0 10 10 8 20 71 61 27 2 0 11 chain 12772 chr8 146364022 + 27289436 27289617 MER30 238 + 38 238 149168 69 6 0 11 12 37 83 chain 341427 chr8 146364022 + 27351835 27355889 HERV9-int 5642 - 95 4177 11856 22 2 1 21 6 4 38 6 4 105 0 1 121 1 0 421 0 1 113 0 4 17 1 0 57 1 2 301 1 33 609 0 3 616 0 1 1141 0 1 52 17 7 273 1 2 111 chain 543818 chr8 146364022 + 27406913 27412950 L1PA3long 6157 - 1 6157 2235 63 4 0 95 0 1 607 1 0 89 0 1 944 3 0 437 1 2 492 1 2 2441 0 1 77 0 128 65 7 0 558 0 1 152 chain 46355 chr8 146364022 + 27419395 27419948 MER41A 554 - 0 554 61727 305 0 1 248 chain 11389 chr8 146364022 + 27432384 27432508 L1PA4 6152 - 16 140 154747 124 chain 3138 chr8 146364022 + 27440697 27440730 MIRb 242 - 114 147 222201 33 chain 3201 chr8 146364022 + 27469821 27469869 MIRc 230 + 84 133 220919 12 3 4 33 chain 29426 chr8 146364022 + 27525776 27526083 AluYb8 318 + 1 308 86951 307 chain 40933 chr8 146364022 + 27549457 27550353 MER4D1 891 + 0 638 67996 97 0 1 68 1 2 37 305 3 27 10 41 38 1 0 6 9 11 99 1 0 185 0 11 12 chain 9783 chr8 146364022 + 27569429 27569786 L1MC1 2226 - 28 296 161686 14 1 0 32 190 107 49 2 0 16 3 0 50 chain 33301 chr8 146364022 + 27595126 27595773 L1PB1 5432 + 4846 5424 78728 77 1 2 178 99 55 11 3 1 50 2 1 16 1 0 43 1 0 16 3 0 7 14 5 19 33 28 15 1 0 21 1 0 13 1 0 16 1 0 4 chain 3943 chr8 146364022 + 27612372 27612488 L1MC3 1789 + 936 1048 208225 30 48 44 12 1 0 5 0 1 20 chain 27426 chr8 146364022 + 27643694 27644102 LTR3B 427 - 4 427 94892 46 19 21 16 11 22 15 0 3 59 1 5 59 6 0 25 0 1 151 chain 29986 chr8 146364022 + 27662517 27662834 AluYb8 318 + 0 318 84850 213 0 1 104 chain 94979 chr8 146364022 + 27669848 27670971 L1PA6 6164 + 5010 6147 38105 157 0 5 186 1 0 36 0 2 310 2 0 63 0 4 230 9 15 129 chain 25692 chr8 146364022 + 27684060 27684333 AluY 311 + 29 303 101318 103 0 1 170 chain 23339 chr8 146364022 + 27690746 27691040 AluSp 311 + 20 296 113984 32 23 5 239 chain 82773 chr8 146364022 + 27737497 27739014 L1PA16 3655 + 2378 3537 42431 85 14 15 83 3 0 25 6 3 86 1 0 65 8 0 44 8 0 44 6 0 52 5 9 9 1 0 18 334 6 58 0 2 149 0 2 69 1 0 88 2 0 42 1 0 49 6 0 119 0 1 36 chain 166891 chr8 146364022 + 27782182 27784112 L1PA6 6164 + 4181 6160 22410 849 0 2 128 15 54 94 1 0 359 0 1 26 0 1 401 0 7 57 chain 8285 chr8 146364022 + 27787634 27787915 THE1B 368 + 0 295 131295 107 8 19 10 11 0 33 1 0 22 37 52 52 chain 26234 chr8 146364022 + 27787920 27788218 AluSp 311 - 13 311 99081 298 chain 1356 chr8 146364022 + 27788218 27788264 THE1B 368 + 295 341 131295 46 chain 13829 chr8 146364022 + 27866840 27867053 L1PA8 5853 - 0 209 145141 93 1 0 19 2 1 40 27 25 31 chain 19069 chr8 146364022 + 27899408 27899755 THE1B 368 + 0 368 129908 12 0 1 48 0 1 44 5 7 4 1 0 57 59 78 51 2 0 5 3 4 56 chain 22165 chr8 146364022 + 27909172 27909431 AluSp 311 + 12 274 119518 40 0 3 219 chain 42420 chr8 146364022 + 27947458 27948181 LTR66 600 + 2 600 66117 400 187 13 25 0 49 111 chain 23393 chr8 146364022 + 27948184 27948909 MER4B 649 - 202 587 113685 17 35 15 19 6 7 148 313 0 34 7 0 15 2 0 23 3 0 5 0 3 40 3 5 4 1 0 50 chain 15658 chr8 146364022 + 27991489 27991679 L1PA6 6164 - 15 205 139404 190 chain 12624 chr8 146364022 + 27997062 27997572 MER2 342 + 82 291 149752 22 6 5 45 335 35 102 chain 134128 chr8 146364022 + 28066253 28068007 L1PA11 4918 + 1637 4487 27176 109 10 9 23 0 3 32 1 2 274 0 1054 174 0 2 242 0 16 190 5 0 446 0 20 11 0 8 61 0 4 17 0 4 21 8 0 34 2 1 10 2 0 26 0 3 42 2 0 12 chain 12197 chr8 146364022 + 28070821 28071033 Tigger4b 360 - 0 208 151436 42 24 23 26 19 16 101 chain 213072 chr8 146364022 + 28078767 28081826 L1PA15 4387 - 78 3187 18292 39 10 8 41 5 4 10 0 2 7 14 8 5 1 0 55 1 0 25 29 30 67 0 4 71 1 0 38 7 5 78 0 2 54 0 1 114 0 3 343 1 0 4 0 1 14 0 3 14 12 11 80 2 0 110 2 23 101 0 1 4 3 0 180 0 5 23 0 3 183 1 5 46 14 17 29 0 4 9 8 7 6 0 1 121 8 8 18 1 0 34 18 20 146 2 3 263 0 11 133 9 8 166 11 12 268 chain 7389 chr8 146364022 + 28100230 28100319 MER4D1 891 + 802 891 174841 89 chain 6453 chr8 146364022 + 28121377 28121522 MER61A 341 - 181 341 181621 62 36 51 18 6 7 4 1 0 18 chain 37553 chr8 146364022 + 28121639 28122135 LTR12F 595 + 0 595 72750 91 25 0 12 11 136 131 1 0 225 chain 48537 chr8 146364022 + 28123545 28124143 LTR10C 591 - 0 591 60079 80 0 2 242 8 0 221 1 2 10 2 0 34 chain 31550 chr8 146364022 + 28136601 28136995 MLT2A1 477 + 1 444 81566 141 0 1 24 5 9 207 0 44 17 chain 27593 chr8 146364022 + 28148776 28149072 AluYb8 318 + 0 294 94369 132 2 0 162 chain 42654 chr8 146364022 + 28149835 28150290 L1HS 6032 - 16 471 65835 455 chain 22765 chr8 146364022 + 28151406 28151751 MER83 447 + 50 431 116755 174 13 20 24 0 17 92 28 40 14 chain 20955 chr8 146364022 + 28162696 28162999 THE1B 368 + 0 307 124084 169 1 0 29 0 3 8 32 34 64 chain 8333 chr8 146364022 + 28187336 28187447 MER2 342 + 131 260 169206 4 1 0 97 0 19 9 chain 40756 chr8 146364022 + 28301106 28301637 MER41A 554 + 0 554 68226 465 15 37 32 4 5 15 chain 15826 chr8 146364022 + 28336359 28336697 MSTA 426 + 44 400 138867 56 9 14 30 8 11 48 77 79 14 0 5 12 6 9 78 chain 4993 chr8 146364022 + 28387964 28388016 5S 121 + 37 89 195213 52 chain 4043 chr8 146364022 + 28444929 28444998 MADE1 96 - 0 85 206755 24 13 29 32 chain 3543 chr8 146364022 + 28445937 28446010 MER58A 224 - 151 224 214676 28 0 18 12 18 0 15 chain 25134 chr8 146364022 + 28465351 28465640 AluY 311 + 4 296 104095 117 3 6 169 chain 24144 chr8 146364022 + 28487571 28487913 THE1B 368 + 0 348 109504 169 1 0 21 7 10 10 0 4 16 1 0 9 0 2 65 7 6 36 chain 26887 chr8 146364022 + 28500921 28501234 AluYk4 311 - 2 311 96681 177 4 0 132 chain 7220 chr8 146364022 + 28518092 28518200 L1MB3 1562 - 18 124 175937 21 2 1 54 1 0 30 chain 14482 chr8 146364022 + 28525228 28525389 L1PA5 6144 + 5983 6144 142939 161 chain 22465 chr8 146364022 + 28529667 28529934 AluY 311 + 17 282 118167 47 2 0 218 chain 23303 chr8 146364022 + 28539302 28539579 AluSp 311 + 14 285 114183 154 6 0 117 chain 6935 chr8 146364022 + 28540962 28541043 L1MA3 4352 - 100 181 177929 81 chain 164453 chr8 146364022 + 28615638 28617457 L1PA3long 6157 - 14 1844 22752 157 0 1 449 1 0 222 0 4 924 8 7 16 0 8 42 chain 21056 chr8 146364022 + 28645959 28646224 AluSq2 311 - 33 300 123709 22 0 1 111 10 11 122 chain 411480 chr8 146364022 + 28673672 28678159 L1PA3long 6157 - 0 4511 9761 159 0 1 99 1 0 1534 0 4 1892 0 1 541 0 19 261 chain 25374 chr8 146364022 + 28678695 28679042 THE1A 353 - 3 351 102812 35 1 2 142 0 1 44 20 19 105 chain 164663 chr8 146364022 + 28696672 28698458 L1PA3long 6157 + 4360 6147 22712 1654 0 1 132 chain 166273 chr8 146364022 + 28737803 28739989 SVA_E 1901 + 0 1896 22487 153 1 0 664 1 49 14 371 43 35 2 1 136 1 0 658 7 0 143 chain 24230 chr8 146364022 + 28738667 28738921 SVA_F 1814 + 1020 1274 109043 254 chain 23168 chr8 146364022 + 28754495 28754790 AluSp 311 - 6 302 114825 131 1 0 97 0 1 4 1 2 61 chain 5356 chr8 146364022 + 28769542 28769610 MER47B 469 - 162 231 191477 18 0 1 50 chain 8385 chr8 146364022 + 28781034 28781137 MER2 342 + 110 213 168932 103 chain 25175 chr8 146364022 + 28818292 28818591 AluSc 308 - 0 298 103877 30 1 0 268 chain 25734 chr8 146364022 + 28839472 28839767 AluY 311 + 0 300 101142 131 0 5 164 chain 8300 chr8 146364022 + 28843643 28843890 L1MC1 2226 - 207 447 169396 10 0 1 16 2 0 6 71 70 28 11 5 29 26 27 48 chain 6920 chr8 146364022 + 28906031 28906113 5S 121 - 31 113 178028 82 chain 20878 chr8 146364022 + 28957990 28958265 AluSp 311 - 17 310 124369 25 0 25 132 10 4 4 1 0 103 chain 26112 chr8 146364022 + 28960485 28960776 AluYk4 311 + 8 299 99568 291 chain 20343 chr8 146364022 + 28962250 28962481 AluYf4 310 - 0 231 126090 231 chain 26505 chr8 146364022 + 28965075 28965376 AluYf4 310 - 9 310 98025 301 chain 84544 chr8 146364022 + 28977695 28978597 L1HS 6032 - 0 902 41704 902 chain 65098 chr8 146364022 + 28978624 28979314 L1HS 6032 + 4419 5109 50527 690 chain 23521 chr8 146364022 + 29023942 29024238 AluSp 311 + 9 299 113011 71 7 1 218 chain 2075 chr8 146364022 + 29054343 29054443 Tigger4a 237 + 33 141 237916 16 48 48 18 6 14 12 chain 115681 chr8 146364022 + 29161588 29162993 LTR12C 1709 + 0 1709 32564 525 6 5 280 0 200 102 1 0 4 4 2 106 0 4 93 0 2 79 0 102 101 0 1 13 7 6 84 chain 395311 chr8 146364022 + 29163073 29167827 HERV9-int 5642 + 0 4759 10266 121 3 4 670 1 0 52 72 68 192 3 4 6 5 0 186 69 69 1704 0 12 1566 0 1 104 chain 62389 chr8 146364022 + 29168800 29169716 LTR12C 1709 + 0 831 51727 294 8 8 268 0 2 26 0 1 100 135 85 38 38 0 9 chain 816 chr8 146364022 + 29169496 29169631 LTR12C 1709 + 1018 1150 61666 94 1 0 4 4 2 32 chain 230 chr8 146364022 + 29169669 29169707 LTR12C 1709 + 1188 1230 61666 36 0 4 2 chain 2230 chr8 146364022 + 29169716 29170085 LTR12C 1709 + 1239 1709 61666 153 0 102 127 5 4 84 chain 49773 chr8 146364022 + 29177066 29177624 LTR6B 557 + 0 557 59181 359 0 1 41 2 0 156 chain 45248 chr8 146364022 + 29217307 29217860 MER41A 554 + 0 553 62771 553 chain 8022 chr8 146364022 + 29221269 29221376 MSTD 398 - 0 106 170928 73 1 0 33 chain 32131 chr8 146364022 + 29247148 29247506 L1PA4 6152 + 5791 6151 80640 36 0 3 68 1 0 253 chain 50955 chr8 146364022 + 29262708 29263500 L1PA16 3655 - 36 819 58337 14 34 14 12 7 4 285 2 0 83 0 15 49 39 40 121 0 2 58 6 5 19 1 0 62 chain 39569 chr8 146364022 + 29272644 29273175 MER41A 554 + 0 554 69937 197 1 0 5 14 15 63 3 25 121 1 2 126 chain 43589 chr8 146364022 + 29305327 29305880 MER41A 554 + 0 554 64699 367 0 1 186 chain 540451 chr8 146364022 + 29306732 29312860 L1PA5 6144 + 5 6138 2745 1428 5 4 1133 0 1 674 0 4 854 0 1 676 0 2 512 2 0 844 chain 6183 chr8 146364022 + 29327785 29327876 MLT1A1 405 - 70 160 183717 70 7 6 14 chain 3667 chr8 146364022 + 29328441 29328487 MLT1A1 405 + 359 405 212446 46 chain 36821 chr8 146364022 + 29363681 29364143 LOR1a 498 + 11 473 73776 462 chain 30858 chr8 146364022 + 29367153 29368003 MSTA 426 - 21 426 82756 10 0 1 165 1 2 71 449 0 26 0 1 25 0 1 103 chain 5174 chr8 146364022 + 29369546 29369636 MER58D 378 - 12 96 193313 9 0 1 33 16 9 32 chain 5261 chr8 146364022 + 29382614 29382694 MER33 330 - 107 183 192397 5 3 0 64 1 0 7 chain 29285 chr8 146364022 + 29390632 29390985 HERVL-int 5654 + 0 353 87639 353 chain 5003 chr8 146364022 + 29392966 29393030 MLT1C 463 - 23 87 195112 64 chain 77147 chr8 146364022 + 29399503 29400404 MER11D 897 + 0 897 44886 272 24 17 434 1 4 170 chain 127872 chr8 146364022 + 29456449 29457841 L1PA3long 6157 - 794 2186 28603 1392 chain 73536 chr8 146364022 + 29457841 29458639 L1PA3long 6157 + 5344 6142 46664 798 chain 31925 chr8 146364022 + 29465839 29466293 MER4A1 472 - 11 472 80974 56 3 5 168 14 15 17 1 0 4 7 12 184 chain 39380 chr8 146364022 + 29466971 29467520 PABL_A 660 + 0 578 70201 24 0 15 16 1 5 21 0 9 178 21 39 199 20 3 69 chain 33019 chr8 146364022 + 29471213 29471723 LTR12 884 + 0 784 79188 25 2 1 34 6 47 8 1 0 24 11 0 45 1 0 60 0 114 20 2 0 64 1 0 172 1 104 18 2 35 13 chain 17537 chr8 146364022 + 29496293 29496536 L1PA8 5853 + 5613 5852 134165 65 2 1 6 8 0 8 0 7 40 2 1 19 1 0 92 chain 22789 chr8 146364022 + 29505142 29505495 THE1B 368 - 0 368 116636 10 3 0 8 7 13 43 1 0 44 5 6 49 2 0 14 10 9 117 0 15 40 chain 28102 chr8 146364022 + 29528088 29528578 MER1A 529 + 0 521 92639 38 26 59 37 8 14 22 3 0 5 26 29 239 34 26 52 chain 8991 chr8 146364022 + 29530085 29530213 MER85 139 + 0 139 165653 49 0 1 45 6 16 28 chain 9691 chr8 146364022 + 29534338 29534503 MER30 238 - 0 184 162137 108 8 0 7 22 49 20 chain 10934 chr8 146364022 + 29563398 29563618 L1PB2 3958 - 453 658 156469 42 0 3 9 9 5 7 2 0 43 23 4 18 8 11 24 0 6 26 2 0 7 chain 31412 chr8 146364022 + 29586767 29587150 MER1A 529 - 1 384 81790 383 chain 6404 chr8 146364022 + 29588378 29588446 MER41A 554 + 399 467 181996 68 chain 12728 chr8 146364022 + 29591344 29591503 L1PA16 3655 - 82 242 149342 115 0 1 44 chain 186177 chr8 146364022 + 29619938 29622000 L1PA3long 6157 + 4081 6144 20401 1399 0 2 526 1 0 136 chain 26932 chr8 146364022 + 29711908 29712268 THE1C 375 - 0 370 96507 144 10 17 10 0 3 11 1 0 8 0 1 176 chain 19650 chr8 146364022 + 29721268 29721533 LTR39 781 - 469 739 128249 58 4 3 149 0 8 46 2 0 6 chain 20515 chr8 146364022 + 29730428 29730783 THE1C 375 + 0 375 125583 19 2 0 28 0 6 10 9 19 6 9 0 91 0 4 15 41 51 69 0 1 56 chain 266482 chr8 146364022 + 29769657 29773027 L1PA8A 6298 + 2957 6291 15369 93 0 1 308 8 7 33 2 0 411 1 0 4 0 1 56 0 1 572 0 2 371 12 12 106 1 18 49 0 1 489 3 0 50 15 16 12 4 7 510 1 0 78 0 2 16 0 1 13 0 1 4 1 0 45 59 1 43 chain 3660 chr8 146364022 + 29802671 29802715 MADE1 96 + 49 93 212575 44 chain 15453 chr8 146364022 + 29820569 29820761 MER2 342 + 103 295 140041 192 chain 44480 chr8 146364022 + 29841119 29841673 MLT2A2 560 + 3 560 63602 200 0 1 91 0 1 206 1 2 56 chain 5396 chr8 146364022 + 29855841 29855904 MER101 471 - 406 469 191027 63 chain 50733 chr8 146364022 + 29863570 29864729 MER4A 717 + 0 713 58479 121 4 0 133 2 9 7 0 5 43 1 0 75 16 14 22 451 0 184 3 0 5 2 5 90 chain 39612 chr8 146364022 + 29872711 29873238 MER9a3 513 + 0 513 69876 18 0 2 80 10 11 17 26 9 119 1 0 178 0 1 78 chain 22255 chr8 146364022 + 29882147 29882431 AluSp 311 + 30 304 119101 98 10 0 176 chain 28746 chr8 146364022 + 29892772 29893182 LTR7 482 + 0 482 90141 69 8 46 109 8 40 155 15 17 46 chain 20069 chr8 146364022 + 29902963 29903256 AluYb8 318 + 27 313 126923 30 8 6 68 0 1 5 22 25 140 9 0 11 chain 3594 chr8 146364022 + 29906448 29906492 LTR52 417 + 12 55 213753 10 1 0 33 chain 34678 chr8 146364022 + 29925661 29926160 MER1A 529 + 43 524 76657 84 9 8 218 2 3 8 0 1 85 35 16 58 chain 7531 chr8 146364022 + 29944542 29944634 MER2 342 + 131 222 173964 44 1 0 47 chain 87674 chr8 146364022 + 29945485 29946759 LTR12D 1347 + 0 1347 40502 209 7 0 98 140 69 79 0 1 80 0 32 86 0 2 38 0 41 88 0 1 181 18 92 250 chain 25906 chr8 146364022 + 29950687 29951039 LTR7 482 - 8 482 100399 168 0 1 42 7 39 60 6 95 69 chain 3469 chr8 146364022 + 29951329 29951371 MER34A 573 - 531 573 215833 42 chain 70129 chr8 146364022 + 29976040 29976903 LTR5B 1012 - 0 1012 48338 73 1 0 108 3 7 177 1 6 45 0 127 332 0 14 123 chain 38876 chr8 146364022 + 30004581 30005088 MER9a3 513 - 0 513 70907 74 9 10 40 13 6 125 1 0 214 0 12 18 0 1 13 chain 204854 chr8 146364022 + 30005088 30007580 HERVK9-int 4720 - 0 4684 18867 578 0 1 327 0 1 319 0 2177 79 0 14 72 0 2 447 0 1 488 0 1 81 1 0 8 1 0 49 1 2 13 1 0 6 8 5 13 chain 42840 chr8 146364022 + 30008904 30009408 MER9a3 513 - 0 513 65605 79 0 1 105 0 7 307 0 1 13 chain 3858 chr8 146364022 + 30010678 30010726 MLT1A0 366 + 0 48 209476 48 chain 26391 chr8 146364022 + 30017661 30018025 THE1C 375 + 0 364 98446 87 0 1 91 0 2 5 23 21 142 1 0 15 chain 22830 chr8 146364022 + 30056762 30057112 THE1B 368 - 0 366 116443 94 0 1 29 60 75 167 chain 59433 chr8 146364022 + 30058064 30058809 MER4E1 777 + 17 770 53151 516 9 17 220 chain 40347 chr8 146364022 + 30061620 30062246 MER4B 649 - 17 648 68813 55 12 8 55 11 1 23 13 19 46 1 0 6 5 1 71 1 15 140 2 0 75 4 2 65 15 23 26 chain 56929 chr8 146364022 + 30083080 30083798 LTR17 781 - 0 781 54577 10 2 3 49 3 4 305 19 43 40 2 1 61 0 38 227 chain 8206 chr8 146364022 + 30099613 30099708 L1PA5 6144 + 6047 6142 169918 95 chain 19323 chr8 146364022 + 30102638 30102895 AluSg 306 + 38 297 129172 229 9 11 19 chain 173983 chr8 146364022 + 30103441 30105388 SVA_E 1901 - 0 1901 21595 910 77 0 64 3 0 91 1 0 19 1 0 126 0 40 327 3 0 179 1 0 145 chain 6762 chr8 146364022 + 30104351 30104428 SVA_E 1901 - 657 735 77773 22 0 1 55 chain 25086 chr8 146364022 + 30106686 30107015 MER4E1 777 - 450 777 104377 32 6 0 50 1 0 4 0 1 188 0 9 18 5 0 25 chain 3660 chr8 146364022 + 30108167 30108219 MADE1 96 + 28 96 212574 14 1 17 37 chain 25502 chr8 146364022 + 30116620 30116967 THE1B 368 + 0 368 102217 44 0 15 36 0 1 69 8 7 15 6 10 6 0 1 87 0 1 76 chain 9507 chr8 146364022 + 30122410 30122519 MSTB 430 + 13 122 163033 109 chain 59881 chr8 146364022 + 30147709 30148686 L1PA15 4387 - 60 985 52885 11 4 2 44 8 5 47 4 3 8 4 0 17 6 5 35 24 28 17 2 1 23 39 8 141 1 0 14 6 5 23 2 0 24 4 0 20 0 1 16 4 0 15 5 3 409 chain 57211 chr8 146364022 + 30150824 30151713 L1PB1 5432 + 4583 5427 54396 40 2 0 174 0 1 4 2 0 8 3 0 292 0 1 10 8 1 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 18 16 45 1 0 15 70 53 21 1 0 21 1 0 13 1 0 12 1 0 7 1 0 4 chain 58324 chr8 146364022 + 30152270 30152984 L1PA6 6164 - 3 710 53795 77 0 5 424 27 15 186 chain 27983 chr8 146364022 + 30170082 30170437 THE1A 353 + 0 353 93059 110 1 0 92 1 0 151 chain 15054 chr8 146364022 + 30222490 30222743 MER44A 345 + 68 331 141162 33 0 10 75 7 13 69 11 9 17 12 8 29 chain 13514 chr8 146364022 + 30227938 30228280 L1MA8 2339 - 285 610 146304 43 3 2 55 2 0 20 2 0 4 2 0 35 32 18 36 80 84 28 chain 10360 chr8 146364022 + 30233222 30233403 MLT1A 405 - 22 187 158865 89 43 27 49 chain 19210 chr8 146364022 + 30252762 30253002 AluJb 308 + 58 307 129500 67 0 6 128 0 3 45 chain 23984 chr8 146364022 + 30282921 30283215 AluSp 311 - 17 311 110422 135 0 1 24 1 0 134 chain 17448 chr8 146364022 + 30314209 30314437 AluSg7 307 + 54 281 134382 68 2 1 8 0 1 70 1 0 79 chain 25951 chr8 146364022 + 30387972 30388278 AluSp 311 - 5 311 100199 306 chain 26671 chr8 146364022 + 30392290 30392577 AluYb8 318 + 35 318 97421 83 4 0 200 chain 26133 chr8 146364022 + 30393645 30393942 AluSp 311 - 13 310 99467 297 chain 23006 chr8 146364022 + 30442436 30442703 AluSp 311 + 10 282 115595 7 0 5 260 chain 7199 chr8 146364022 + 30468501 30468601 L1MB2 1706 + 1374 1475 176068 43 6 7 51 chain 201662 chr8 146364022 + 30479495 30482875 L1PA5 6144 - 4 2348 19092 19 1 0 136 0 1 39 1073 0 212 0 30 404 0 5 943 0 4 171 0 1 228 4 0 146 0 1 4 chain 83967 chr8 146364022 + 30479723 30480763 MER11C 1089 - 30 1089 41914 321 0 1 38 1 0 5 0 4 97 0 1 20 44 45 210 0 4 58 0 9 246 chain 7017 chr8 146364022 + 30487243 30487329 MER5A 189 - 75 161 177339 86 chain 4661 chr8 146364022 + 30501205 30501260 U5 65 + 0 55 198944 55 chain 13060 chr8 146364022 + 30518131 30518316 MER51A 677 + 0 176 147995 64 4 0 71 0 1 4 1 0 4 5 0 32 chain 5199 chr8 146364022 + 30521055 30521115 L1PB4 2604 - 154 215 193030 37 0 1 23 chain 8372 chr8 146364022 + 30553060 30553173 MER30 238 + 128 238 169013 66 4 1 43 chain 3659 chr8 146364022 + 30582347 30582413 MER4C 627 - 215 352 212585 19 11 82 36 chain 44304 chr8 146364022 + 30586097 30586596 LTR2C 499 + 0 499 63817 499 chain 300263 chr8 146364022 + 30587686 30591192 HERVE-int 4064 + 0 3482 13409 465 0 2 343 0 1 21 8 7 121 0 1 4 1 0 553 0 1 14 26 1 619 2 1 52 0 1 4 3 4 308 7 6 873 2 0 80 chain 20970 chr8 146364022 + 30646558 30646836 AluSp 311 - 7 302 124028 5 2 0 20 8 14 33 4 17 206 chain 3726 chr8 146364022 + 30671727 30671783 LTR39 781 + 642 699 211529 40 5 6 11 chain 28425 chr8 146364022 + 30676795 30677150 THE1B 368 - 0 368 91487 168 4 0 25 1 3 117 0 15 40 chain 7948 chr8 146364022 + 30681726 30681853 L1MA6 2487 - 227 338 171336 28 21 5 78 chain 4694 chr8 146364022 + 30710123 30710189 L1PB1 5432 + 5351 5414 198584 19 1 0 21 1 0 13 1 0 10 chain 41971 chr8 146364022 + 30740926 30741474 L1PA8A 6298 - 13 565 66657 70 7 5 137 1 5 76 0 3 44 2 0 157 0 1 54 chain 25649 chr8 146364022 + 30742713 30743060 THE1B 368 + 0 345 101501 13 2 0 30 0 5 124 3 2 18 2 0 103 2 0 50 chain 40346 chr8 146364022 + 30782953 30783605 LTR15 485 + 1 485 68816 57 0 1 283 173 4 139 chain 7967 chr8 146364022 + 30798100 30798204 MSTD 398 - 20 124 171235 104 chain 5855 chr8 146364022 + 30812858 30812932 MLT1B 390 + 315 390 186639 62 0 1 12 chain 19415 chr8 146364022 + 30816610 30816933 THE1B 368 - 33 368 128905 16 12 11 30 7 8 27 11 19 6 0 4 11 10 11 23 1 0 169 chain 4922 chr8 146364022 + 30832495 30832552 L1MB8 1703 + 1531 1588 196016 57 chain 28207 chr8 146364022 + 30833845 30834139 AluYa5 310 - 16 310 92282 294 chain 181765 chr8 146364022 + 30842926 30844915 L1PA3long 6157 - 2 1992 20811 280 0 1 1709 chain 22729 chr8 146364022 + 30876399 30876668 AluY 311 + 38 311 116928 83 1 0 4 1 2 10 0 4 170 chain 8930 chr8 146364022 + 30892253 30892543 LTR56 451 - 124 420 165979 23 9 16 21 0 3 55 141 137 41 chain 24709 chr8 146364022 + 30914800 30915112 AluY 311 + 0 308 106385 56 4 0 252 chain 5233 chr8 146364022 + 30927629 30927706 MADE1 96 + 0 96 192697 30 6 25 41 chain 25842 chr8 146364022 + 31006630 31006934 AluY 311 + 0 304 100684 28 1 0 104 0 1 171 chain 12256 chr8 146364022 + 31009724 31009859 AluYc 301 + 149 284 151177 135 chain 34372 chr8 146364022 + 31038560 31038992 LTR3B_ 500 - 41 500 77101 9 0 25 58 0 2 63 1 0 150 0 1 151 chain 3572 chr8 146364022 + 31044831 31044998 MER3 215 + 20 83 214101 9 0 6 11 2 0 26 108 0 11 chain 25579 chr8 146364022 + 31049050 31049332 L1PA3long 6157 - 14 296 101830 282 chain 5474 chr8 146364022 + 31058543 31058623 L1MC1 2226 - 249 336 190262 39 1 9 15 1 0 24 chain 539800 chr8 146364022 + 31088792 31094934 L1PA4 6152 - 11 6151 2847 846 0 1 395 0 1 611 0 1 245 0 1 3600 0 1 58 8 0 65 0 1 314 chain 18614 chr8 146364022 + 31095089 31095339 L1PA8 5853 - 0 245 131175 91 1 0 4 1 0 13 2 1 55 1 0 10 1 0 71 chain 40225 chr8 146364022 + 31097328 31097848 MER41C 542 - 0 540 68995 212 3 24 23 2 1 133 1 0 99 0 1 47 chain 93278 chr8 146364022 + 31100876 31102176 LTR12C 1709 - 0 1709 38571 84 1 0 85 1 0 12 0 102 136 4 0 6 1 5 51 11 4 17 24 0 82 0 288 41 0 2 117 3 0 98 1 2 106 8 7 80 3 46 45 5 6 257 0 9 21 chain 16502 chr8 146364022 + 31122519 31122855 THE1B 368 + 0 341 136915 52 6 7 49 15 16 45 56 61 12 1 0 64 7 6 29 chain 23639 chr8 146364022 + 31137327 31137596 L1PA5 6144 - 22 291 112361 269 chain 4401 chr8 146364022 + 31142324 31142378 L1MA4A 3247 - 130 183 201921 10 1 0 43 chain 6949 chr8 146364022 + 31142408 31142493 MER39B 650 - 155 240 177824 85 chain 144108 chr8 146364022 + 31184568 31186183 L1PA4 6152 + 4534 6151 25462 45 0 1 297 0 1 621 0 2 5 7 5 640 chain 39077 chr8 146364022 + 31191066 31191528 L1PA5 6144 + 5682 6144 70636 462 chain 79465 chr8 146364022 + 31194062 31195112 L1PA7 6471 + 5459 6451 43842 143 8 15 49 47 3 286 0 1 4 1 0 109 5 0 66 0 1 218 23 6 91 chain 32463 chr8 146364022 + 31220203 31220635 MER57A1 433 - 1 433 80091 113 7 6 30 11 12 271 chain 180997 chr8 146364022 + 31221938 31224141 L1PA7 6471 - 7 2264 20901 150 1 2 463 1 0 4 2 3 37 0 3 156 18 23 21 0 1 89 0 1 86 0 1 30 0 37 220 11 15 385 0 1 529 chain 10840 chr8 146364022 + 31292223 31292410 MER21C 908 + 92 229 156830 49 50 0 88 chain 298704 chr8 146364022 + 31299721 31303050 L1PA4 6152 + 2819 6152 13493 2210 1 0 275 0 4 11 0 1 683 0 1 143 1 0 5 chain 35214 chr8 146364022 + 31308441 31308938 L1PA16 3655 + 3034 3539 75905 55 20 23 92 1 0 50 0 1 18 0 2 15 2 0 114 0 1 107 0 4 23 chain 28690 chr8 146364022 + 31318036 31318339 AluYa5 310 - 7 310 90368 303 chain 26928 chr8 146364022 + 31322917 31323325 MER4A1 472 + 62 472 96523 29 1 0 91 49 50 168 1 3 69 chain 46673 chr8 146364022 + 31327106 31327742 L1PA8 5853 + 5215 5853 61476 152 1 7 190 1 0 44 6 4 66 2 1 14 9 8 10 0 3 21 7 6 16 7 6 90 chain 3861 chr8 146364022 + 31328106 31328149 MLT1C 463 - 363 406 209442 43 chain 495281 chr8 146364022 + 31341639 31348954 L1PA5 6144 - 0 6144 7110 154 0 1 104 2 0 1122 0 1 314 0 3 308 4 26 953 13 11 165 0 2 18 8 297 853 0 1 597 2 1 913 1502 17 124 10 24 13 20 6 116 chain 117011 chr8 146364022 + 31347190 31348671 LTR12C 1709 + 0 1709 32121 266 30 20 172 7 3 11 0 3 244 0 118 141 1 0 11 0 129 106 11 4 481 chain 23727 chr8 146364022 + 31359151 31359631 L1MA1 4479 - 337 804 111897 35 3 1 15 18 17 80 0 1 11 0 1 9 48 39 74 1 0 13 23 20 71 1 0 16 2 0 8 6 11 5 1 0 40 chain 172309 chr8 146364022 + 31365117 31367114 L1PA5 6144 - 7 2011 21782 139 4 5 688 5 9 247 6 7 279 0 1 629 chain 61511 chr8 146364022 + 31367123 31367817 L1PA5 6144 + 3449 4143 52111 694 chain 507552 chr8 146364022 + 31371661 31377772 L1PA6 6164 - 3 6164 6361 96 0 1 41 6 0 14 0 7 95 1 2 589 0 4 615 5 1 40 0 1 289 0 4 666 1 0 447 3 8 51 0 1 11 7 5 702 5 7 6 1 0 132 0 1 193 1 2 176 0 1 123 1 0 641 0 3 222 1 2 146 0 17 104 0 12 116 1 0 47 0 2 280 0 2 236 chain 30845 chr8 146364022 + 31379900 31380356 LTR9B 643 - 0 435 82777 203 26 27 144 31 8 39 0 1 13 chain 8432 chr8 146364022 + 31402692 31402803 L1MA4 2864 - 979 1089 168669 89 2 1 20 chain 19034 chr8 146364022 + 31408653 31409012 THE1B 368 + 0 368 130020 13 2 0 34 17 23 98 29 32 13 29 31 62 1 0 4 1 2 56 chain 471661 chr8 146364022 + 31423623 31429016 L1PA4 6152 + 0 6152 7980 982 0 743 72 0 1 522 1 0 125 0 4 720 1 2 601 0 1 848 0 1 7 1 0 504 0 1 180 1 0 4 0 9 131 0 1 693 chain 28966 chr8 146364022 + 31438268 31438576 AluYa5 310 - 2 310 89151 308 chain 38891 chr8 146364022 + 31456225 31456665 L1PA5 6144 - 19 459 70880 440 chain 4217 chr8 146364022 + 31474648 31474697 LTR16A 446 - 103 152 204332 49 chain 75603 chr8 146364022 + 31489053 31489890 L1PA3long 6157 - 467 1296 45712 514 8 0 315 chain 41148 chr8 146364022 + 31489890 31490339 L1PA3long 6157 + 5693 6142 67722 449 chain 28944 chr8 146364022 + 31505640 31505947 AluYg6 310 - 3 310 89255 307 chain 58899 chr8 146364022 + 31537659 31538306 L1PA3long 6157 - 0 648 53458 338 0 1 309 chain 25728 chr8 146364022 + 31547453 31547823 THE1C 375 + 0 375 101180 108 2 3 38 0 2 32 13 13 105 8 10 64 chain 28497 chr8 146364022 + 31565962 31566260 AluYa5 310 - 12 310 91194 298 chain 30296 chr8 146364022 + 31571275 31571593 AluYb8 318 - 0 318 83927 318 chain 8254 chr8 146364022 + 31585214 31585651 MER44B 551 - 40 518 169663 20 45 46 67 137 177 25 11 1 18 92 102 22 chain 23027 chr8 146364022 + 31615594 31615865 L1PA7 6471 - 18 289 115501 271 chain 19566 chr8 146364022 + 31615865 31616103 L1PA7 6471 + 5944 6179 128474 230 3 0 5 chain 21659 chr8 146364022 + 31617647 31617883 L1PA3long 6157 - 1081 1317 121548 236 chain 99336 chr8 146364022 + 31617883 31618977 L1PA3long 6157 + 5062 6157 36945 1090 0 1 4 chain 40490 chr8 146364022 + 31619626 31620122 L1PA8A 6298 - 6 517 68608 4 0 1 94 0 14 398 chain 23175 chr8 146364022 + 31622258 31622509 L1PA2 6032 - 4 255 114784 251 chain 27249 chr8 146364022 + 31627989 31628284 L1PA5 6144 + 5840 6135 95434 295 chain 31723 chr8 146364022 + 31634056 31634409 L1PA4 6152 - 0 354 81289 148 0 1 205 chain 14736 chr8 146364022 + 31634409 31634585 L1PA4 6152 + 5487 5739 142152 126 0 76 50 chain 6123 chr8 146364022 + 31665352 31665451 L1MB1 2102 - 95 192 184240 65 13 11 21 chain 31288 chr8 146364022 + 31681532 31681893 L1PA5 6144 - 0 351 82006 5 3 0 134 7 0 212 chain 544377 chr8 146364022 + 31709127 31715149 L1PA3long 6157 - 1 6153 2159 1280 1 0 1491 0 1 2475 0 128 355 0 1 264 8 9 148 chain 272468 chr8 146364022 + 31773729 31776776 L1PA3long 6157 - 0 3058 15050 147 1 8 1644 0 4 193 0 1 971 1 0 90 chain 29387 chr8 146364022 + 31784955 31785263 AluYa5 310 - 2 310 87130 308 chain 10162 chr8 146364022 + 31785390 31785511 L1PA4 6152 - 6 128 159788 83 0 1 38 chain 29878 chr8 146364022 + 31804534 31804851 AluYb8 318 + 0 317 85174 317 chain 7679 chr8 146364022 + 31871882 31871976 L1P1 4361 - 33 126 173048 23 1 0 70 chain 23795 chr8 146364022 + 31883192 31883479 AluY 311 + 11 300 111498 107 1 0 14 0 1 45 0 2 120 chain 284658 chr8 146364022 + 31890897 31894909 L1PA10 4194 - 33 4015 14375 11 1 0 33 3 0 299 2 0 23 0 1 16 0 1 179 1 0 473 1 0 7 6 7 53 0 2 309 0 1 30 0 1 40 0 3 5 5 4 33 3 0 5 0 3 351 0 6 283 1 0 40 0 4 72 2 7 21 4 0 209 0 6 90 0 1 7 3 2 67 1 0 6 3 4 176 0 2 310 0 4 6 4 0 128 7 6 48 9 8 27 0 1 239 4 3 4 1 0 80 27 19 5 1 0 10 1 0 6 20 18 9 5 3 21 1 0 7 3 1 7 19 0 4 4 0 8 1 0 15 33 39 12 8 4 10 11 6 13 2 0 8 chain 211521 chr8 146364022 + 31922729 31925117 L1PA4 6152 - 9 2414 18396 316 0 18 928 2 1 1142 chain 4926 chr8 146364022 + 31933058 31933129 MER2 342 - 124 202 195971 13 2 9 56 chain 3067 chr8 146364022 + 31938233 31938268 MLT2D 439 - 2 37 223608 35 chain 16794 chr8 146364022 + 31950562 31950769 LTR5_Hs 974 + 0 207 136129 207 chain 3934 chr8 146364022 + 31950775 31950817 LTR5B 1012 + 970 1012 208351 42 chain 24695 chr8 146364022 + 31952429 31952712 AluSc5 308 - 12 295 106465 283 chain 25184 chr8 146364022 + 31962761 31963118 THE1B 368 - 2 368 103828 117 7 0 8 26 43 29 1 0 169 chain 27898 chr8 146364022 + 31980157 31980467 L1PA3long 6157 - 15 325 93378 310 chain 29331 chr8 146364022 + 32016768 32017080 AluYb8 318 + 0 312 87390 312 chain 8538 chr8 146364022 + 32028762 32028866 L1PA8 5853 - 6 109 168074 87 1 0 16 chain 537497 chr8 146364022 + 32028876 32034999 L1PA4 6152 + 0 6152 3236 1147 0 5 84 0 1 368 1 2 178 1 0 717 3 4 402 0 7 350 0 2 285 0 1 1182 0 5 255 0 1 1140 0 6 10 chain 11032 chr8 146364022 + 32035020 32035190 L1PA8 5853 - 113 279 156086 47 6 5 9 1 0 71 9 7 27 chain 4227 chr8 146364022 + 32045953 32046161 MLT1D 503 + 24 213 204207 37 2 0 5 119 113 26 11 0 8 chain 21388 chr8 146364022 + 32046243 32046486 L1PA3long 6157 + 5913 6157 122555 98 1 2 144 chain 9369 chr8 146364022 + 32046756 32046880 L1PA16 3655 - 63 185 163716 7 0 1 6 3 0 108 chain 62985 chr8 146364022 + 32108591 32109387 L1PA7 6471 - 17 790 51451 595 0 3 44 0 2 101 28 0 28 chain 320370 chr8 146364022 + 32109688 32114010 L1P2 5180 - 2 4340 12581 4 1 0 30 9 8 46 2 1 44 5 6 855 0 1 4 1 0 110 0 5 536 13 15 221 1 0 65 0 1 170 7 18 248 0 4 171 4 7 62 0 1 75 38 12 72 17 21 57 0 1 123 0 1 408 17 1 476 0 1 32 56 80 86 5 4 45 1 0 5 16 17 127 9 13 48 chain 8340 chr8 146364022 + 32114011 32114115 5S 121 + 0 99 169170 74 0 1 17 6 0 7 chain 20577 chr8 146364022 + 32115969 32116348 THE1D 372 - 0 372 125367 119 48 51 79 19 16 41 19 10 29 2 0 5 0 2 5 0 2 13 chain 24252 chr8 146364022 + 32156265 32156564 AluSc5 308 + 3 302 108932 299 chain 18837 chr8 146364022 + 32177881 32178255 MSTA 426 - 6 423 130555 74 36 56 33 33 37 8 2 0 6 5 1 57 23 48 97 chain 10913 chr8 146364022 + 32223741 32224075 L1MA4 2864 - 74 409 156544 16 6 7 21 140 101 39 1 0 67 7 8 15 0 1 14 0 38 8 chain 38949 chr8 146364022 + 32236143 32236596 L1PA4 6152 - 0 460 70801 6 0 7 447 chain 3793 chr8 146364022 + 32269997 32270037 MLT2B4 540 + 500 540 210495 40 chain 28033 chr8 146364022 + 32355818 32356208 THE1C 375 - 0 375 92881 69 0 4 14 8 9 125 20 0 154 chain 35881 chr8 146364022 + 32372460 32372961 L1PA16 3655 - 225 737 75029 107 0 2 29 2 0 70 14 18 129 0 11 79 1 0 40 3 0 27 chain 11357 chr8 146364022 + 32380711 32380862 Charlie1 1172 + 798 950 154876 102 1 2 48 chain 23752 chr8 146364022 + 32384599 32385013 L1PB4 2604 + 2180 2570 111761 134 11 10 31 0 3 28 57 31 94 1 0 20 1 2 8 0 1 6 7 6 16 chain 3913 chr8 146364022 + 32387923 32387967 Tigger3b 1229 - 1148 1192 208656 44 chain 22988 chr8 146364022 + 32409428 32409720 AluSc 308 - 9 302 115678 20 0 2 39 5 4 228 chain 12097 chr8 146364022 + 32420577 32420748 MER30 238 + 41 229 151806 65 7 0 6 5 29 88 chain 21979 chr8 146364022 + 32423589 32423877 AluSx1 309 + 0 299 120321 52 3 0 204 8 22 21 chain 43982 chr8 146364022 + 32431172 32431660 L1PA4 6152 - 1 489 64224 488 chain 5245 chr8 146364022 + 32437757 32437840 MLT1D 503 - 412 497 192574 55 3 4 9 1 2 15 chain 8776 chr8 146364022 + 32495743 32495840 L1PA6 6164 + 6064 6161 166788 97 chain 6973 chr8 146364022 + 32545469 32545555 MSTA 426 - 340 426 177667 86 chain 24886 chr8 146364022 + 32586312 32586600 AluY 311 + 11 297 105430 122 2 0 164 chain 14665 chr8 146364022 + 32632869 32633073 L1PA16 3655 - 83 285 142372 162 11 9 31 chain 24043 chr8 146364022 + 32641573 32641867 AluSp 311 - 15 309 110098 294 chain 7943 chr8 146364022 + 32651188 32651321 L1PA8 5853 - 93 224 171362 17 6 5 43 17 16 50 chain 42269 chr8 146364022 + 32652141 32652685 L1PA8 5853 - 45 585 66308 48 1 0 19 4 3 37 1 8 8 8 0 77 2 0 36 0 2 6 1 0 296 chain 93124 chr8 146364022 + 32667622 32668737 L1PA7 6471 + 5335 6467 38622 168 1 3 116 0 7 71 0 2 288 0 3 314 0 1 148 0 2 9 chain 3664 chr8 146364022 + 32673110 32673153 MADE1 96 - 53 96 212500 43 chain 169816 chr8 146364022 + 32673766 32675582 L1HS 6032 - 2 1818 22074 1816 chain 150629 chr8 146364022 + 32675582 32677182 L1HS 6032 + 2601 4201 24522 1600 chain 29145 chr8 146364022 + 32683750 32684098 THE1A 353 - 0 353 88339 141 0 6 96 2 1 109 chain 10559 chr8 146364022 + 32685910 32686039 MER85 139 - 0 139 158006 35 0 10 94 chain 56511 chr8 146364022 + 32698010 32698762 MER4E1 777 - 7 777 54844 220 15 7 106 0 1 76 0 1 11 6 25 269 7 11 17 0 1 25 chain 82002 chr8 146364022 + 32734297 32735308 MER11B 1079 + 0 1042 42757 65 0 11 183 3 0 57 1 18 436 2 4 241 7 11 16 chain 7812 chr8 146364022 + 32744580 32744668 L1PA5 6144 + 6053 6141 172235 88 chain 25261 chr8 146364022 + 32749234 32749514 L1PA4 6152 + 5871 6151 103407 280 chain 15841 chr8 146364022 + 32834626 32834959 L1PB1 5432 - 10 318 138818 4 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 9 6 13 21 12 21 1 0 42 16 18 52 16 10 12 1 0 6 1 0 26 chain 5491 chr8 146364022 + 32872645 32872708 tRNA-Gln-CAA_ 72 - 0 63 190130 63 chain 119016 chr8 146364022 + 32876703 32878019 L1PA3long 6157 - 0 1313 31401 5 2 0 254 1 0 1054 chain 46034 chr8 146364022 + 32880051 32880640 LTR10C 591 + 0 591 62009 89 4 0 80 1 0 335 4 6 13 6 11 57 chain 98442 chr8 146364022 + 32888049 32889262 L1PA7 6471 + 5254 6451 37177 4 1 0 286 1 0 4 0 1 67 8 0 226 5 3 145 0 3 160 1 0 125 7 0 173 chain 32688 chr8 146364022 + 32896060 32896514 LTR10F 562 + 0 562 79710 105 2 86 15 0 31 176 7 3 82 4 2 44 2 1 17 chain 144333 chr8 146364022 + 32909752 32911836 L1PA10 4194 + 2031 4138 25422 77 34 34 78 0 6 46 6 10 52 0 1 206 9 8 23 0 4 31 7 5 55 0 8 280 16 1 172 28 43 122 3 6 21 0 4 9 1 0 4 55 49 57 1 4 157 0 2 475 14 15 13 12 9 20 chain 19269 chr8 146364022 + 32924024 32924311 L1PA13 3608 + 3219 3497 129324 54 2 0 6 1 0 57 1 0 55 9 6 46 2 0 5 2 0 20 1 0 20 0 3 6 chain 31884 chr8 146364022 + 32935576 32935972 L1PA5 6144 - 2 416 81039 241 7 24 73 0 1 75 chain 16256 chr8 146364022 + 32935977 32936162 L1PA5 6144 + 5556 5741 137590 185 chain 55907 chr8 146364022 + 32942093 32942715 L1PA4 6152 - 0 622 55181 622 chain 35461 chr8 146364022 + 32967986 32968436 MER4A1 472 + 0 472 75607 33 1 0 197 0 22 71 0 1 148 chain 37396 chr8 146364022 + 32986819 32987326 LTR10D 510 - 0 510 72959 42 0 4 45 2 0 176 9 11 132 2 0 6 2 4 14 4 3 73 chain 26574 chr8 146364022 + 32991758 32992113 THE1C 375 - 17 375 97747 8 1 0 53 0 2 19 0 1 189 13 14 72 chain 13271 chr8 146364022 + 33037695 33037884 MER4B 649 - 8 224 147208 8 1 0 69 1 0 8 8 37 94 chain 40327 chr8 146364022 + 33043598 33044098 MLT2A2 560 - 58 558 68841 192 1 0 105 1 2 201 chain 221431 chr8 146364022 + 33045698 33048828 L1PA7 6471 + 2641 6459 17786 18 0 1 44 0 4 17 147 1143 1361 0 1 123 0 1 8 0 1 6 1 0 128 0 1 122 2 1 18 0 1 60 0 2 142 323 0 474 0 5 136 chain 13024 chr8 146364022 + 33045777 33045924 L1PA7 6471 + 6124 6271 147128 147 chain 3375 chr8 146364022 + 33049094 33049133 MER5B 177 + 11 50 217576 39 chain 26627 chr8 146364022 + 33053582 33053887 AluY 311 + 1 301 97565 151 5 0 149 chain 20705 chr8 146364022 + 33064222 33064597 THE1D 372 - 0 372 124949 47 0 1 85 63 74 67 7 0 37 16 7 28 0 1 25 chain 3774 chr8 146364022 + 33067488 33067594 MLT1J1-int 962 - 524 628 210760 25 50 48 31 chain 9836 chr8 146364022 + 33072754 33072887 L1PA8 5853 - 0 131 161410 90 4 3 19 2 1 18 chain 292936 chr8 146364022 + 33106023 33110006 L1PA10 4194 - 33 4015 13826 11 1 0 34 3 0 12 1 0 22 1 0 70 0 1 39 0 1 134 0 1 8 4 5 88 5 7 22 0 1 59 1 3 222 0 1 250 16 28 287 0 1 87 0 1 15 5 0 17 1 3 124 0 4 70 8 17 362 0 1 41 3 1 446 13 15 291 0 1 201 0 1 4 1 0 490 5 19 69 10 20 70 2 0 81 2 0 6 8 2 10 3 0 5 1 0 5 0 3 8 10 8 21 74 49 15 2 0 21 1 0 9 2 1 8 2 0 10 10 6 9 2 0 8 3 0 13 2 0 7 chain 5799 chr8 146364022 + 33112736 33112816 MADE1 96 + 0 96 187155 45 2 18 33 chain 23414 chr8 146364022 + 33118575 33118884 AluSp 311 - 0 311 113572 46 4 6 148 1 2 5 1 0 104 chain 74134 chr8 146364022 + 33119318 33120119 L1HS 6032 - 0 801 46445 801 chain 60585 chr8 146364022 + 33120119 33120765 L1HS 6032 + 4568 5214 52351 646 chain 30766 chr8 146364022 + 33151014 33151390 THE1C 375 - 0 375 82921 25 1 0 350 chain 240107 chr8 146364022 + 33157193 33160708 L1PBa 3878 + 29 3549 16768 10 2 0 9 3 0 12 3 0 3 1 0 8 19 14 5 2 0 10 2 1 15 91 85 12 1 0 24 2 0 6 28 12 267 17 16 205 36 35 206 4 3 109 4 6 78 1 0 122 0 11 7 46 58 78 0 5 142 21 20 24 6 8 4 1 0 135 0 1 241 0 6 176 18 19 11 0 1 417 0 9 32 0 3 12 0 1 146 0 1 170 4 0 187 1 0 75 0 3 244 chain 56100 chr8 146364022 + 33161023 33161706 L1PA8A 6298 + 5608 6291 55071 569 0 1 4 5 4 105 chain 15510 chr8 146364022 + 33161884 33162241 L1PB1 5432 + 5108 5430 139855 6 3 0 23 1 0 5 22 17 8 2 0 52 1 0 10 8 7 44 1 0 13 10 7 13 9 0 14 2 0 5 1 0 5 10 9 24 1 0 22 3 2 10 1 0 14 2 0 12 chain 173904 chr8 146364022 + 33162966 33164938 L1PA5 6144 + 4144 6129 21603 197 0 4 673 0 1 215 0 1 57 0 6 512 0 1 318 chain 41943 chr8 146364022 + 33166057 33166869 LTR66 600 + 0 552 66695 324 69 13 65 226 23 48 1 0 79 chain 5592 chr8 146364022 + 33166382 33166444 LTR66 600 + 340 402 189156 62 chain 5881 chr8 146364022 + 33166519 33166585 LTR66 600 + 335 401 186356 66 chain 5880 chr8 146364022 + 33166592 33166659 LTR66 600 + 337 404 186369 67 chain 5956 chr8 146364022 + 33192707 33193044 MER63C 923 - 72 358 185634 22 226 164 23 15 26 51 chain 6287 chr8 146364022 + 33212963 33213054 MLT2B2 565 - 470 563 182912 70 5 7 16 chain 147664 chr8 146364022 + 33213191 33214818 L1PA3long 6157 - 0 1628 24926 149 0 1 8 1 0 691 0 1 778 chain 6573 chr8 146364022 + 33216143 33216239 MLT1A0 366 + 62 151 180678 75 8 1 13 chain 385616 chr8 146364022 + 33219457 33223930 L1PA6 6164 + 1669 6161 10587 365 12 11 168 0 2 119 3 1 421 0 2 431 0 1 705 1 0 472 0 8 196 0 5 198 0 1 537 0 4 481 2 1 209 1 2 152 chain 45396 chr8 146364022 + 33224623 33225137 MER9a2 513 + 0 513 62603 425 1 0 88 chain 5663 chr8 146364022 + 33227008 33227080 MLT1A0 366 + 278 350 188452 72 chain 3254 chr8 146364022 + 33311125 33311178 MLT1D 503 - 14 69 219917 28 6 8 19 chain 11851 chr8 146364022 + 33340771 33340933 MER41A 554 - 24 183 152824 4 0 1 54 6 2 98 chain 28296 chr8 146364022 + 33348662 33349524 L1MA2 4263 - 205 730 91958 75 97 100 77 12 9 13 0 1 39 4 1 29 0 3 8 0 3 38 1 0 69 352 13 5 1 0 42 chain 12708 chr8 146364022 + 33362077 33362254 MER30 238 - 0 192 149429 100 2 0 10 3 20 62 chain 17732 chr8 146364022 + 33365529 33365837 MER34D 576 + 310 549 133617 44 70 1 194 chain 8893 chr8 146364022 + 33370991 33371099 U13 108 + 0 108 166167 108 chain 3772 chr8 146364022 + 33374724 33374769 MER51A 677 - 80 125 210785 45 chain 11962 chr8 146364022 + 33430827 33430977 L1PA7 6471 + 6322 6468 152356 136 4 0 10 chain 113298 chr8 146364022 + 33431241 33432624 LTR12C 1709 + 2 1709 33281 770 1 324 15 1 0 5 3 1 107 0 4 481 chain 52401 chr8 146364022 + 33445965 33446560 L1PA5 6144 - 0 600 57352 11 3 1 235 0 7 346 chain 20459 chr8 146364022 + 33452898 33453196 AluSg7 307 - 16 307 125733 32 18 10 94 3 6 7 3 0 11 1 2 129 chain 19123 chr8 146364022 + 33459363 33459606 AluSp 311 - 18 251 129763 8 9 0 160 1 0 65 chain 6078 chr8 146364022 + 33473066 33473141 MER47A 366 - 240 315 184597 75 chain 23433 chr8 146364022 + 33475874 33476157 AluSc 308 + 8 291 113459 283 chain 44351 chr8 146364022 + 33480456 33481108 MER41B 635 - 0 635 63757 90 0 1 59 35 34 112 19 0 90 0 3 116 1 2 36 1 0 42 9 8 42 chain 33498 chr8 146364022 + 33483667 33484123 LTR7 482 - 5 482 78411 23 10 6 142 0 1 13 9 39 138 20 14 101 chain 13307 chr8 146364022 + 33489666 33490509 LTR12C 1709 + 769 1545 72026 68 1 0 77 0 119 42 2 49 79 428 196 146 chain 3575 chr8 146364022 + 33490308 33490363 LTR12C 1709 + 1547 1632 197972 22 0 29 9 1 2 23 chain 110775 chr8 146364022 + 33490513 33491914 LTR12C 1709 - 0 1709 34009 100 2 0 44 0 1 92 26 19 143 10 9 36 0 2 35 0 4 106 8 324 376 6 1 417 chain 2589 chr8 146364022 + 33491914 33492078 LTR12C 1709 + 1545 1708 72026 76 39 38 49 chain 24848 chr8 146364022 + 33508390 33510711 THE1C 375 + 0 362 105633 182 2 1 20 1968 11 135 1 0 13 chain 7622 chr8 146364022 + 33508602 33508732 THE1C 375 + 214 348 173396 9 1 4 34 17 18 69 chain 11469 chr8 146364022 + 33510354 33510527 THE1C 375 + 0 179 154430 30 1 0 17 0 6 17 15 16 93 chain 18679 chr8 146364022 + 33513081 33514123 L1MA2 4263 - 149 505 131001 10 1 0 41 22 16 13 0 1 26 0 2 20 40 37 74 676 0 68 17 14 34 chain 152186 chr8 146364022 + 33515055 33516771 SVA_D 2077 - 1 2068 24315 644 0 303 91 0 2 84 0 36 8 2 0 65 0 40 198 40 0 567 0 12 17 chain 22206 chr8 146364022 + 33517050 33517384 THE1B 368 + 23 368 119322 120 0 2 24 1 0 29 41 51 119 chain 60084 chr8 146364022 + 33536082 33536869 L1PB1 5432 + 4075 5008 52783 47 20 166 262 1 0 66 8 5 180 1 5 202 chain 431396 chr8 146364022 + 33555724 33560588 L1PA4 6152 - 5 4870 9284 25 19 0 733 1 2 747 0 3 153 0 1 58 0 11 475 0 1 164 0 1 480 0 1 378 0 1 1631 chain 17661 chr8 146364022 + 33601869 33602155 THE1B 368 - 78 368 133803 39 28 27 10 18 24 21 1 0 169 chain 403333 chr8 146364022 + 33607206 33612572 L1PB1 5432 - 19 5352 9991 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 1 0 15 20 11 5 3 0 16 1 0 40 4 3 16 2 1 53 2 0 9 6 2 9 1 0 13 1 0 20 16 14 288 1 0 105 0 2 83 0 1 11 9 11 105 12 22 28 1 2 346 22 8 133 1 0 223 1 4 463 0 2 57 6 6 358 1 2 345 9 0 56 1 0 5 1 2 590 12 1 185 8 9 56 0 1 21 0 2 158 0 2 5 2 0 7 1 0 46 0 6 238 0 1 131 1 0 29 0 1 188 1 0 110 2 4 11 3 4 16 0 2 63 1 0 465 chain 38674 chr8 146364022 + 33621845 33622364 MER41C 542 - 0 542 71188 15 0 1 84 1 2 98 10 31 162 1 0 99 0 1 49 chain 7467 chr8 146364022 + 33623231 33624502 L1MB7 1623 + 697 1337 174360 36 919 326 79 214 177 8 1 0 14 chain 23553 chr8 146364022 + 33627643 33627937 AluSp 311 - 17 311 112832 141 0 3 8 4 1 141 chain 34271 chr8 146364022 + 33637776 33638374 L1PA15 4387 - 31 618 77249 27 8 2 12 3 1 44 6 3 37 1 2 11 10 5 16 0 13 52 1 0 27 1 0 75 22 26 43 10 8 19 1 0 36 8 6 56 6 2 21 2 0 43 chain 57345 chr8 146364022 + 33647995 33648900 L1PB2 3958 + 2944 3830 54315 249 36 32 76 23 21 41 2 0 14 6 1 61 2 0 12 4 0 88 1 12 66 1 0 64 1 0 53 1 2 5 1 0 12 2 0 22 1 0 22 14 8 25 chain 2929 chr8 146364022 + 33690572 33690606 LTR45C 530 - 9 43 226537 34 chain 13896 chr8 146364022 + 33707782 33707957 L1PA16 3655 - 77 252 144933 175 chain 389560 chr8 146364022 + 33732741 33738131 L1PB1 5432 - 19 5358 10464 9 1 0 13 1 0 38 11 9 12 1 0 4 3 1 16 8 0 10 3 0 21 1 0 39 31 29 7 1 0 4 0 1 31 2 0 11 1 0 5 0 8 11 5 4 14 7 0 11 6 2 83 3 1 53 0 4 316 0 1 14 1 3 18 1 5 437 0 4 17 0 1 147 8 7 114 1 0 30 1 0 121 2 0 708 5 0 68 2 16 43 1 0 57 2 0 111 0 1 230 0 1 521 0 2 12 2 1 97 9 13 59 0 6 175 0 5 174 0 1 8 15 8 15 1 0 5 1 0 11 1 3 115 0 4 501 1 0 199 60 5 183 5 6 6 1 0 229 0 2 52 chain 9274 chr8 146364022 + 33742339 33742468 MER85 139 - 0 139 164193 22 1 0 6 4 15 96 chain 419105 chr8 146364022 + 33754579 33759253 L1PA4 6152 - 15 4693 9556 239 0 1 1886 0 1 128 0 1 1679 0 2 199 0 1 393 3 1 147 chain 22386 chr8 146364022 + 33771137 33771521 THE1D 372 + 0 368 118557 53 61 44 84 17 19 25 1 0 5 0 1 4 1 0 133 chain 25081 chr8 146364022 + 33779308 33779666 THE1B 368 + 0 368 104399 60 9 23 86 1 0 40 1 5 24 11 4 126 chain 33392 chr8 146364022 + 33785337 33785782 L1PA8 5853 + 5383 5821 78583 181 1 0 44 2 0 11 1 0 39 0 1 25 6 4 52 2 1 16 4 3 61 chain 4792 chr8 146364022 + 33798669 33798736 L1MA4 2864 - 55 120 197441 42 2 0 23 chain 12784 chr8 146364022 + 33810317 33810473 L1PREC2 3366 + 2540 2693 149119 77 3 0 76 chain 18803 chr8 146364022 + 33817561 33817804 MER75B 242 + 0 242 130670 28 0 2 29 0 1 156 4 0 26 chain 537964 chr8 146364022 + 33819250 33825461 L1PA4 6152 - 1 6152 3155 148 1 2 528 0 1 2181 0 13 494 5 6 942 0 1 1259 0 1 248 72 1 18 12 5 303 chain 3853 chr8 146364022 + 33825826 33825873 L1MA5A 2387 + 2248 2295 209599 47 chain 26634 chr8 146364022 + 33862694 33863043 THE1C 375 - 20 375 97536 5 1 0 164 1 2 48 1 7 129 chain 5010 chr8 146364022 + 33871167 33871224 MLT1B 390 + 288 345 195024 57 chain 24544 chr8 146364022 + 33883860 33884212 THE1D 372 - 0 372 107292 133 8 14 26 9 11 111 12 23 22 0 1 31 chain 94578 chr8 146364022 + 33893908 33894969 L1PA4 6152 - 9 1062 38190 973 8 0 80 chain 34916 chr8 146364022 + 33894969 33895353 L1P1 4361 + 3220 3606 76050 55 0 2 329 chain 540051 chr8 146364022 + 33912299 33918437 L1PA4 6152 + 1 6143 2810 1182 0 1 1755 0 1 1145 1 2 1453 0 1 602 chain 7119 chr8 146364022 + 33918462 33918575 L1PB2 3958 + 975 1081 176624 44 14 7 55 chain 18697 chr8 146364022 + 33984240 33984621 L1PA15 4387 - 60 415 130957 13 20 1 13 7 11 19 38 35 18 14 9 23 2 1 49 6 5 26 1 0 132 chain 164817 chr8 146364022 + 33991336 33993194 L1PA4 6152 - 22 1884 22674 128 1 2 1124 1 0 521 0 4 83 chain 18409 chr8 146364022 + 34003265 34003628 THE1B 368 + 0 368 131752 111 0 3 6 6 4 53 88 93 36 7 6 56 chain 3285 chr8 146364022 + 34029636 34029801 L1MB1 2102 - 136 298 219266 23 114 111 28 chain 392658 chr8 146364022 + 34033437 34038834 L1PB1 5432 + 34 5424 10371 12 14 13 40 10 12 109 0 1 391 0 1 142 0 4 7 0 3 209 9 8 410 1 0 6 8 0 8 23 17 468 0 4 68 0 5 7 7 1 380 1 0 141 1 0 155 0 1 543 4 6 244 2 1 281 1 0 16 13 18 214 6 8 7 2 0 139 1 2 215 0 2 184 5 4 70 0 5 12 0 1 76 1 4 6 1 0 89 1 0 139 0 8 95 1 2 4 1 0 49 13 13 20 1 0 11 18 13 10 3 1 51 2 1 16 1 0 25 12 14 4 1 0 16 3 0 7 13 5 7 0 1 4 1 0 7 3 1 4 1 0 14 2 0 24 1 0 17 1 4 13 1 0 16 1 0 4 chain 34164 chr8 146364022 + 34057982 34058366 L1PA5 6144 - 0 383 77396 9 2 0 138 0 1 235 chain 75196 chr8 146364022 + 34069910 34070745 L1PA4 6152 + 5308 6143 45926 835 chain 551850 chr8 146364022 + 34072450 34078593 L1PA3long 6157 + 6 6157 1209 30 8 0 422 0 1 171 0 1 320 0 4 781 0 1 215 1 0 744 0 1 559 0 3 1534 0 2 515 0 4 843 chain 16972 chr8 146364022 + 34103071 34103324 L1PA8 5853 - 0 245 135662 93 1 0 15 2 1 51 21 14 38 0 1 32 chain 13575 chr8 146364022 + 34141582 34141781 L1PB2 3958 - 131 326 146069 52 1 0 26 2 0 67 11 10 40 chain 4166 chr8 146364022 + 34144860 34144917 MADE1 96 - 8 96 205017 42 0 31 15 chain 332693 chr8 146364022 + 34154795 34158928 L1P3 4156 + 3 4139 12101 243 6 5 71 1 0 84 1 0 146 0 1 57 2 4 450 1 2 154 0 1 207 0 1 4 1 0 467 0 3 524 0 3 198 0 2 68 7 3 748 0 5 8 6 1 335 10 10 296 14 11 24 chain 5131 chr8 146364022 + 34174925 34175003 MADE1 96 + 2 96 193769 29 5 20 11 0 1 33 chain 56779 chr8 146364022 + 34245469 34246287 L1PA8 5853 - 117 896 54668 44 18 16 68 2 0 46 1 0 207 47 11 250 2 0 5 9 11 64 3 5 52 chain 5162 chr8 146364022 + 34267044 34267118 MADE1 96 + 0 93 193427 30 1 18 21 0 1 15 0 1 7 chain 30906 chr8 146364022 + 34279219 34279655 LTR3B 427 - 0 427 82675 79 1 0 4 32 26 19 3 1 298 chain 2739 chr8 146364022 + 34280273 34280322 MER58C 217 + 77 139 229632 33 2 15 14 chain 13272 chr8 146364022 + 34291024 34291343 L1PB1 5432 - 10 312 147203 18 1 0 13 1 0 13 13 12 18 13 22 14 28 16 15 1 0 45 1 0 14 4 3 51 2 0 9 2 0 3 2 0 12 3 2 4 1 0 18 chain 351099 chr8 146364022 + 34295824 34301035 L1P2 5180 + 7 5164 11565 138 6 5 13 131 138 17 192 5 31 86 55 37 18 0 58 0 1 5 78 60 171 21 0 46 4 7 6 0 12 104 1 5 19 7 27 4 1 0 73 0 1 4 1 0 350 0 1 722 2 0 203 18 45 387 3 0 5 20 169 239 2 3 7 1 0 32 5 0 400 0 1 335 0 1 349 0 2 54 0 4 82 0 1 240 3 4 48 0 1 352 6 5 45 1 0 28 chain 9721 chr8 146364022 + 34304854 34304975 L1PA5 6144 - 2 122 161980 16 1 0 11 0 1 83 1 0 9 chain 356587 chr8 146364022 + 34304975 34309395 L1P2 5180 - 748 5178 11443 192 0 1 368 10 6 342 0 1 339 1 0 864 2 0 1361 0 25 139 2 1 6 1 0 46 11 21 205 20 18 87 0 11 9 18 7 119 18 17 96 32 17 132 chain 33689 chr8 146364022 + 34334228 34334663 LTR3B 427 - 0 427 78108 79 25 16 223 0 1 108 chain 13346 chr8 146364022 + 34335070 34335279 MER44A 345 - 22 233 146907 38 33 35 138 chain 6651 chr8 146364022 + 34340312 34340392 L1PB4 2604 + 2470 2550 180080 80 chain 25350 chr8 146364022 + 34346964 34347331 THE1B 368 + 0 368 102953 15 2 0 25 0 5 62 6 5 60 2 1 19 2 0 68 4 6 102 chain 5586 chr8 146364022 + 34376950 34377105 Tigger5 388 - 26 175 189221 16 22 6 11 1 17 13 6 4 24 1 0 11 2 0 20 6 5 22 chain 164217 chr8 146364022 + 34385526 34387722 SVA_D 2077 - 19 2034 22779 516 1 0 86 1 4 51 4 0 13 117 0 4 1 0 33 1 0 10 0 1 114 123 0 6 2 0 166 0 1 9 0 53 30 0 1 10 21 63 169 0 6 6 0 1 156 40 0 506 chain 2839 chr8 146364022 + 34386201 34386244 SVA_D 2077 - 906 949 121549 43 chain 2753 chr8 146364022 + 34386244 34386315 SVA_D 2077 - 744 815 119972 71 chain 8884 chr8 146364022 + 34386498 34386600 SVA_D 2077 - 742 845 166214 70 0 1 32 chain 1418 chr8 146364022 + 34387176 34387216 SVA_D 2077 - 1448 1488 182177 40 chain 382283 chr8 146364022 + 34392935 34397874 L1P2 5180 + 13 4961 10687 137 1 0 44 1 0 50 18 17 185 19 0 70 1 0 47 1 0 224 0 15 529 21 19 516 7 8 74 0 1 46 0 4 325 4 0 173 30 30 680 1 2 23 6 10 374 4 5 72 0 4 75 0 1 206 22 15 331 1 0 286 0 10 73 8 9 111 0 4 143 chain 6451 chr8 146364022 + 34397874 34397943 L1PA5 6144 - 81 150 178048 69 chain 517116 chr8 146364022 + 34397943 34403902 L1PA5 6144 + 185 6143 5472 313 0 1 947 3 2 1029 4 3 439 0 2 546 0 1 34 1 0 519 19 12 1956 0 7 136 3 1 10 chain 4409 chr8 146364022 + 34407320 34407390 L1MB1 2102 - 1974 2032 201816 13 12 0 45 chain 21533 chr8 146364022 + 34436613 34436889 AluYc3 301 - 13 290 122033 21 0 2 14 0 1 138 3 0 5 0 1 95 chain 205293 chr8 146364022 + 34444578 34446903 L1PA4 6152 - 9 2336 18839 12 5 4 347 0 1 169 1 0 214 1 4 1576 chain 63930 chr8 146364022 + 34446903 34447643 L1PA4 6152 + 3067 3829 50963 236 0 1 98 0 6 34 0 12 226 1 0 3 1 0 21 0 2 115 0 3 5 chain 15280 chr8 146364022 + 34471448 34471735 L1PB1 5432 + 5161 5420 140539 7 5 0 69 1 0 44 1 0 15 1 0 4 23 11 11 13 10 14 2 0 23 1 0 22 1 0 13 1 0 16 chain 5458 chr8 146364022 + 34476720 34476784 L1MA9 1812 - 1657 1721 190435 64 chain 12240 chr8 146364022 + 34497475 34497617 L1PA5 6144 - 12 154 151253 142 chain 5472 chr8 146364022 + 34564888 34564959 L1PA17 2846 - 153 223 190288 43 1 0 27 chain 147264 chr8 146364022 + 34581425 34583088 L1PA4 6152 - 0 1662 24999 854 1 0 808 chain 99990 chr8 146364022 + 34583088 34584239 L1PA4 6152 + 3341 4482 36709 420 12 1 471 0 1 248 chain 4493 chr8 146364022 + 34584316 34584418 MLT1C 463 - 4 115 200864 39 33 42 30 chain 3317 chr8 146364022 + 34592407 34592444 L1MA4A 3247 + 3012 3049 218644 37 chain 110789 chr8 146364022 + 34595617 34597023 L1PA5 6144 - 4702 6144 34006 272 9 0 223 0 4 108 0 17 79 0 1 4 2 0 568 0 12 16 7 20 118 chain 405546 chr8 146364022 + 34597027 34601701 L1PA5 6144 + 1448 6132 9925 354 0 1 13 2 1 216 0 4 275 1 0 607 0 2 17 0 1 713 1 0 699 0 2 1466 0 2 176 1 2 133 chain 26923 chr8 146364022 + 34638186 34638474 L1PA2 6032 - 3 291 96535 288 chain 23623 chr8 146364022 + 34662775 34663090 THE1B 368 + 18 368 112452 26 10 39 53 0 8 30 1 0 120 1 0 74 chain 9539 chr8 146364022 + 34670875 34671003 AluSp 311 + 159 289 162888 109 7 9 12 chain 22117 chr8 146364022 + 34690849 34691459 MSTA-int 1630 + 1340 1630 119721 123 0 3 49 1 0 36 322 0 79 chain 37348 chr8 146364022 + 34717704 34718157 LTR7 482 - 0 482 73030 49 12 14 18 4 0 106 0 31 264 chain 26631 chr8 146364022 + 34730778 34731132 THE1B 368 - 0 368 97554 75 1 0 110 11 11 117 0 15 40 chain 6253 chr8 146364022 + 34740329 34740427 LTR12B 2670 + 2197 2294 183144 66 13 12 19 chain 79814 chr8 146364022 + 34745521 34746636 MER11A 1151 - 0 1142 43676 179 0 1 23 12 12 26 0 1 42 89 12 20 0 5 150 0 1 385 10 6 22 0 1 111 0 99 46 chain 54732 chr8 146364022 + 34752794 34753435 SVA_B 1603 + 994 1598 55880 33 37 0 571 chain 42665 chr8 146364022 + 34765778 34766315 MER41A 554 - 14 554 65826 262 0 1 182 1 2 27 0 1 65 chain 77062 chr8 146364022 + 34767751 34768839 MER11A 1151 - 2 1151 44937 109 9 8 51 0 1 8 1 0 51 0 1 31 21 3 24 44 27 145 5 6 140 6 7 93 0 1 115 0 2 32 4 0 16 3 0 50 1 0 61 0 99 68 chain 5487 chr8 146364022 + 34775876 34775937 Tigger2a 444 + 126 187 190155 61 chain 9137 chr8 146364022 + 34840712 34841173 MER30 238 + 61 238 164876 39 10 29 26 306 0 40 5 8 35 chain 19265 chr8 146364022 + 34848700 34848922 L1PA7 6471 + 6246 6469 129334 195 0 1 27 chain 28527 chr8 146364022 + 34856461 34856816 L1PA7 6471 + 6100 6457 91063 101 9 10 104 0 1 141 chain 4867 chr8 146364022 + 34884047 34884171 L1MA3 4352 + 4213 4328 196615 23 8 4 20 9 7 14 3 2 5 1 0 22 5 4 14 chain 56894 chr8 146364022 + 34910687 34911414 LTR12 884 + 0 884 54600 25 1 0 107 1 26 58 2 66 94 2 0 127 0 57 23 0 14 287 chain 43660 chr8 146364022 + 34916243 34916920 L1PB2 3958 - 120 799 64614 63 2 1 11 16 15 65 2 1 65 1 0 72 1 0 93 4 0 13 2 0 23 0 1 38 1 0 16 1 0 29 0 7 17 4 1 96 1 7 20 8 12 13 chain 19423 chr8 146364022 + 34927965 34928233 L1PA8 5853 + 5577 5853 128890 33 0 14 41 0 1 13 1 0 8 2 1 52 2 1 19 1 0 37 3 0 56 chain 73764 chr8 146364022 + 34951832 34952650 SVA_D 2077 - 1265 2077 46641 789 3 0 9 3 0 14 chain 20259 chr8 146364022 + 35021493 35021854 THE1D 372 + 2 372 126349 24 0 1 5 1 0 24 48 49 27 20 25 27 3 7 149 1 0 32 chain 555887 chr8 146364022 + 35028990 35035026 L1PA2 6032 - 2 6031 736 260 1 0 47 7 0 74 0 1 5647 chain 28153 chr8 146364022 + 35036361 35036666 AluYk12 309 + 4 309 92450 305 chain 59805 chr8 146364022 + 35085641 35086389 L1PA7 6471 - 1 753 52927 5 2 0 149 7 8 48 8 0 107 0 1 379 5 15 23 0 2 15 chain 10103 chr8 146364022 + 35113874 35113990 L1PA7 6471 - 37 154 160075 20 0 1 96 chain 5813 chr8 146364022 + 35116040 35116124 MIR 256 + 119 202 187007 24 1 0 18 1 0 4 0 1 36 chain 39002 chr8 146364022 + 35134207 35134757 PABL_A 660 + 0 660 70744 22 0 6 53 0 9 44 0 2 14 23 62 14 19 68 115 0 4 141 0 1 105 chain 13118 chr8 146364022 + 35164537 35164716 MER30 238 - 5 198 147772 112 4 15 12 0 3 51 chain 4867 chr8 146364022 + 35178395 35178610 LTR56 451 + 207 418 196618 52 125 126 27 5 0 6 chain 3825 chr8 146364022 + 35244550 35244596 MER5A1 166 + 31 77 210003 46 chain 2720 chr8 146364022 + 35249134 35249163 MER110 477 - 37 66 229899 29 chain 29033 chr8 146364022 + 35250643 35250950 AluYf4 310 - 3 310 88842 307 chain 12878 chr8 146364022 + 35259729 35260071 THE1B 368 - 20 368 148716 40 1 0 65 166 173 70 chain 4739 chr8 146364022 + 35273590 35273665 L1MA3 4352 + 4243 4314 198027 15 2 0 24 2 1 5 1 0 26 chain 3827 chr8 146364022 + 35277481 35277561 MER52A 1651 - 888 979 209975 15 1 0 5 18 20 27 0 10 14 chain 4284 chr8 146364022 + 35282506 35282551 L1PA4 6152 - 182 227 203425 45 chain 14755 chr8 146364022 + 35282551 35282714 L1PA4 6152 + 5989 6152 142083 163 chain 9047 chr8 146364022 + 35306326 35306489 L1PB4 2604 - 52 216 165333 60 26 28 57 6 5 14 chain 12072 chr8 146364022 + 35352871 35353068 MER30 238 - 3 198 151891 45 3 0 29 28 23 23 2 8 67 chain 3282 chr8 146364022 + 35360470 35360508 MER5A1 166 + 0 38 219323 38 chain 28746 chr8 146364022 + 35364562 35364871 AluYa5 310 - 0 310 90143 305 0 1 4 chain 11309 chr8 146364022 + 35369159 35369339 MER30 238 - 8 207 155034 31 3 0 33 3 9 29 2 0 11 8 26 60 chain 558697 chr8 146364022 + 35385563 35391589 L1PA2 6032 - 0 6030 430 782 1 0 1014 0 4 1180 0 1 3049 chain 37446 chr8 146364022 + 35413931 35414433 MER41C 542 - 0 527 72896 206 5 26 71 5 8 181 0 1 34 chain 37202 chr8 146364022 + 35453975 35454453 MER4A1 472 - 1 472 73235 196 1 0 4 2 1 28 16 11 231 chain 498129 chr8 146364022 + 35457321 35463212 L1PA4 6152 - 0 5654 6949 707 0 4 910 0 1 436 0 2 486 1 0 381 260 15 27 1 0 244 0 3 2438 chain 20643 chr8 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35771722 35771969 L1PA8 5853 + 5610 5853 136083 65 5 4 11 1 0 46 9 8 16 2 1 92 chain 378902 chr8 146364022 + 35790061 35794750 HERV9-int 5642 + 0 4814 10792 600 3 0 118 6 0 11 0 1 61 1 0 57 5 3 241 109 18 4 0 1 68 0 53 8 1 0 847 2 5 329 8 11 147 0 1 13 0 10 148 0 4 22 1 0 248 0 1 676 6 160 854 1 0 94 chain 10152 chr8 146364022 + 35796464 35796635 LTR12 884 + 169 378 159838 86 29 0 19 9 76 28 chain 14918 chr8 146364022 + 35826820 35827105 L1MA5A 2387 + 2046 2288 141582 23 1 0 39 1 0 48 2 0 24 15 1 16 0 2 14 11 8 11 24 0 56 chain 9971 chr8 146364022 + 35832305 35832421 MLT2A2 560 - 444 560 160723 116 chain 54141 chr8 146364022 + 35842370 35843238 L1MA1 4479 - 295 1118 56270 12 7 0 9 3 1 11 5 0 9 1 0 35 2 0 152 36 32 64 1 0 14 2 0 19 1 0 71 1 0 16 2 0 25 2 1 181 17 6 7 2 0 79 13 12 39 4 2 26 chain 34064 chr8 146364022 + 35850524 35851028 L1M1 2793 - 1131 1649 77520 107 0 5 69 0 3 114 0 1 14 11 22 42 12 10 6 4 0 21 4 5 65 1 0 34 chain 89675 chr8 146364022 + 35851036 35852143 L1PA7 6471 - 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chain 552482 chr8 146364022 + 36052775 36058911 L1PA3long 6157 - 0 6151 1133 1855 0 1 1008 0 1 602 1 0 903 0 11 725 0 2 696 0 1 346 chain 54482 chr8 146364022 + 36067723 36068479 MER4E1 777 + 29 769 56039 200 4 5 34 0 4 146 6 15 109 1 8 77 1 0 111 41 5 26 chain 34050 chr8 146364022 + 36076536 36076950 MER57A1 433 - 18 433 77547 132 0 1 282 chain 36973 chr8 146364022 + 36078755 36079604 MER41A 554 - 0 554 73550 16 5 4 60 1 6 40 0 1 37 315 2 65 1 0 4 1 2 40 15 11 89 0 17 160 chain 407662 chr8 146364022 + 36081810 36087407 L1PA8 5853 + 496 5853 9859 148 0 5 6 0 1 6 0 1 97 9 10 380 1 0 4 1 2 306 0 1 98 3 4 191 231 0 226 0 1 641 4 8 104 4 5 350 4 13 181 6 7 615 0 2 484 38 0 19 6 15 59 7 1 34 0 2 165 1 0 319 0 2 50 1 4 19 19 16 181 5 7 276 1 0 46 2 0 71 1 0 44 2 1 16 2 1 19 2 1 92 chain 50798 chr8 146364022 + 36116589 36117213 L1PA7 6471 - 1544 2164 58434 288 1 0 31 0 2 23 3 0 19 8 7 246 1 0 4 chain 2145 chr8 146364022 + 36117213 36117239 L1PA7 6471 + 4931 4957 232385 26 chain 125694 chr8 146364022 + 36117240 36118747 L1PA7 6471 + 4957 6470 29188 664 2 0 18 1 0 497 3 4 22 0 7 144 0 1 156 chain 17063 chr8 146364022 + 36156731 36157039 L1PA15 4387 - 76 373 135421 41 54 48 5 0 2 8 4 0 22 2 1 54 1 0 24 1 0 92 chain 30344 chr8 146364022 + 36174390 36174708 AluYb8 318 + 0 318 83791 318 chain 3107 chr8 146364022 + 36178300 36178369 SVA_F 1814 - 722 991 222790 25 9 6 14 1 204 20 chain 22625 chr8 146364022 + 36179072 36179343 AluY 311 + 40 308 117453 99 7 4 165 chain 3134 chr8 146364022 + 36222107 36222144 MER5A1 166 + 98 136 222297 32 0 1 5 chain 60582 chr8 146364022 + 36241238 36241906 L1PA3long 6157 - 0 668 52526 668 chain 555096 chr8 146364022 + 36246091 36252126 L1PA2 6032 - 0 6032 817 984 8 0 1916 0 4 1838 0 1 1289 chain 3260 chr8 146364022 + 36258090 36258294 LTR37A 408 - 19 262 219782 37 142 182 16 1 0 8 chain 33145 chr8 146364022 + 36265238 36265621 L1PA4 6152 - 1 384 78993 383 chain 519481 chr8 146364022 + 36265636 36271786 L1PA2 6032 - 3 6032 5217 1663 0 2 568 1 0 5 5 6 128 1 2 2546 1 0 4 0 1 177 0 1 148 139 11 53 0 7 136 0 4 103 15 9 199 1 0 95 8 7 154 chain 3840 chr8 146364022 + 36272051 36272099 MER58A 224 + 175 223 209792 48 chain 5557 chr8 146364022 + 36272399 36272467 Arthur1B 1073 + 566 634 189505 68 chain 47872 chr8 146364022 + 36317042 36317605 L1PA7 6471 + 5893 6457 60575 200 0 1 363 chain 269211 chr8 146364022 + 36321730 36325034 HERVL-int 5654 - 0 3336 15221 223 0 6 6 11 6 651 0 6 103 1 2 685 5 6 187 0 12 119 0 6 152 13 14 51 6 8 612 1 3 478 chain 69343 chr8 146364022 + 36327386 36328179 L1PA4 6152 - 1145 1941 48599 119 1 0 540 0 4 133 chain 103755 chr8 146364022 + 36328179 36329326 L1PA4 6152 + 4994 6140 35784 307 2 1 838 chain 108291 chr8 146364022 + 36335996 36337177 L1PA2 6032 - 1775 2956 34570 1181 chain 160599 chr8 146364022 + 36337177 36338943 L1PA2 6032 + 4261 6026 23253 1603 8 0 5 0 8 135 1 0 14 chain 544295 chr8 146364022 + 36342158 36348049 L1PA2 6032 - 4 6029 2172 848 0 1 3151 0 1 696 0 132 1196 chain 19484 chr8 146364022 + 36382143 36382394 L1PA8 5853 + 5358 5608 128704 206 2 1 43 chain 18587 chr8 146364022 + 36382396 36382643 L1PA8 5853 + 5608 5853 131266 70 2 1 65 2 1 108 chain 275440 chr8 146364022 + 36387108 36390784 HERVL-int 5654 + 0 5654 14902 625 0 1 444 23 0 108 1 0 542 1 0 302 0 1 223 1 2 251 0 1 34 166 0 293 35 6 142 0 1 86 0 1 69 0 25 70 3 2187 68 29 12 160 chain 11445 chr8 146364022 + 36389668 36389795 HERVL-int 5654 + 2372 2499 154518 127 chain 2946 chr8 146364022 + 36390838 36390873 MLT2A1 477 + 341 376 226220 35 chain 70247 chr8 146364022 + 36393919 36394995 MER11A 1151 - 0 1144 48293 153 8 7 81 7 1 16 1 0 4 0 59 12 0 2 69 7 11 29 4 5 11 28 20 123 8 7 20 0 1 6 1 0 108 6 7 93 1 12 66 1 0 19 1 3 10 1 0 104 5 13 55 2 1 16 chain 26397 chr8 146364022 + 36407899 36408282 MER57B1 401 + 0 401 98423 55 0 2 28 11 13 117 16 28 36 0 1 11 0 2 50 1 0 58 chain 3835 chr8 146364022 + 36430666 36430708 MIR 256 + 149 191 209841 42 chain 56060 chr8 146364022 + 36439222 36439850 L1PA3long 6157 - 0 626 55084 15 3 0 74 1 2 535 chain 68986 chr8 146364022 + 36441906 36443000 L1PA16 3655 - 67 1126 48818 11 3 0 158 0 3 125 5 3 33 55 54 61 0 3 54 16 0 3 19 0 98 1 3 10 0 1 70 13 12 182 30 29 24 1 0 122 chain 41637 chr8 146364022 + 36479096 36479570 MER9a1 513 - 0 474 67110 474 chain 3351 chr8 146364022 + 36500204 36500591 L1MD 993 + 360 775 218025 24 329 357 34 chain 62298 chr8 146364022 + 36523870 36524615 L1PA6 6164 - 8 754 51752 516 8 9 221 chain 421616 chr8 146364022 + 36524901 36530041 L1P2 5180 - 7 5174 9498 37 2 1 48 1 0 573 1 4 622 0 12 103 0 4 152 0 1 5 1 0 387 0 1 196 0 1 112 0 1 377 0 2 778 0 1 149 7 8 142 0 1 213 0 1 448 1 0 6 1 0 272 1 0 268 1 0 52 1 0 45 1 0 76 23 31 4 1 0 33 chain 39703 chr8 146364022 + 36570371 36570815 L1PA4 6152 + 5701 6144 69749 278 1 0 165 chain 503012 chr8 146364022 + 36583280 36589419 L1PA6 6164 + 0 6162 6670 395 12 17 37 8 0 118 4 3 217 0 17 36 1 0 1485 6 0 864 0 1 910 4 0 81 0 1 152 0 2 20 6 10 872 4 5 497 0 1 203 4 14 16 1 2 186 chain 5440 chr8 146364022 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146364022 + 36778539 36778648 LTR40b 463 - 0 111 205232 14 47 49 48 chain 7205 chr8 146364022 + 36781102 36781323 LTR10E 629 - 81 293 176034 15 1 0 22 7 6 39 12 11 11 26 22 23 43 41 22 chain 3619 chr8 146364022 + 36846892 36846935 L1MC3 1789 - 412 455 213361 43 chain 18754 chr8 146364022 + 36864241 36864571 THE1A 353 + 0 327 130816 109 2 1 68 0 1 5 27 33 16 26 25 41 13 5 23 chain 26248 chr8 146364022 + 36870409 36870750 THE1C 375 + 0 339 99026 185 1 0 9 5 4 141 chain 23536 chr8 146364022 + 36888232 36888525 AluSp 311 - 12 311 112925 232 8 14 53 chain 4922 chr8 146364022 + 36922245 36922307 Tigger2a 444 + 86 148 196031 62 chain 11440 chr8 146364022 + 36945489 36945693 THE1D 372 - 61 281 154533 73 57 72 27 0 1 47 chain 71952 chr8 146364022 + 36967071 36968249 L1PREC2 3366 + 1820 3046 47498 194 0 1 447 0 1 100 0 76 70 0 1 6 1 0 30 7 6 14 25 35 5 1 0 33 102 83 26 40 23 31 12 10 34 chain 7615 chr8 146364022 + 36970580 36970676 L1MB8 1703 - 158 254 173441 96 chain 28268 chr8 146364022 + 36970676 36971104 MLT2A2 560 - 0 560 92054 147 2 111 28 54 78 16 1 0 180 chain 4819 chr8 146364022 + 36974011 36974318 MLT2C2 476 + 154 476 197137 33 234 249 40 chain 20678 chr8 146364022 + 36979320 36979597 AluY 311 + 0 261 125039 126 16 0 135 chain 39736 chr8 146364022 + 36988823 36989352 MLT2A2 560 - 0 560 69704 147 0 11 110 0 1 111 1 0 8 13 33 139 chain 25975 chr8 146364022 + 37019518 37019881 THE1B 368 - 0 368 100117 286 40 45 37 chain 11117 chr8 146364022 + 37049308 37049428 L1PA4 6152 - 607 727 155746 120 chain 53592 chr8 146364022 + 37049428 37050015 L1PA4 6152 + 5554 6141 56615 587 chain 76039 chr8 146364022 + 37050885 37051853 LTR5_Hs 974 - 0 974 45456 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 32597 chr8 146364022 + 37098859 37099407 L1PB1 5432 + 4905 5420 79852 194 17 15 20 1 0 12 1 0 10 6 2 9 2 0 53 18 16 45 1 0 15 1 0 4 2 0 8 9 0 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3411 chr8 146364022 + 37134082 37134118 MER45A 178 - 8 44 216919 36 chain 488599 chr8 146364022 + 37136576 37142842 L1PA8A 6298 + 41 6262 7420 15 14 1 6 0 7 8 6 1 19 3 0 26 14 5 18 2 1 8 3 2 9 13 11 9 2 0 17 2 0 4 1 0 13 1 0 8 1 0 6 1 0 8 1 0 15 14 8 62 6 0 79 3 1 23 6 4 342 4 5 263 1 0 77 4 1 8 0 5 94 1 0 249 3 4 181 0 1 241 0 6 94 1 0 38 0 1 301 0 1 152 4 2 117 0 3 163 0 9 377 0 1 195 1 0 37 1 2 76 1 0 934 1 0 408 2 0 112 0 1 178 0 1 10 0 1 322 0 1 40 2 1 437 0 8 94 22 1 232 chain 4674 chr8 146364022 + 37158200 37158257 MLT1G1 539 + 0 57 198827 57 chain 4011 chr8 146364022 + 37165452 37165584 MIR 256 + 22 155 207215 15 71 73 28 1 0 17 chain 15212 chr8 146364022 + 37172752 37173092 THE1C 375 - 38 375 140738 43 0 2 57 42 50 7 1 0 63 35 45 16 27 7 34 2 0 13 chain 3247 chr8 146364022 + 37180215 37180285 MIRb 242 - 67 135 220055 22 11 12 6 3 0 28 chain 24921 chr8 146364022 + 37220082 37220425 L1PA8 5853 + 5517 5853 105218 47 1 0 44 2 0 69 3 2 10 1 0 51 2 1 19 1 0 93 chain 20008 chr8 146364022 + 37230798 37231037 AluSc 308 + 19 258 127117 239 chain 27981 chr8 146364022 + 37273311 37273682 THE1C 375 - 0 368 93063 25 1 0 164 1 2 59 3 0 118 chain 42499 chr8 146364022 + 37283575 37284117 MLT2A2 560 + 0 552 66013 180 1 0 219 3 14 139 chain 93229 chr8 146364022 + 37293745 37295065 L1MA2 4263 - 150 1474 38589 8 1 0 41 13 6 92 1 0 9 3 2 44 1 2 36 0 1 66 3 0 91 7 4 17 0 1 31 1 0 78 5 0 15 1 2 78 10 23 139 7 6 260 2 10 141 1 2 76 0 1 42 chain 554245 chr8 146364022 + 37317805 37323910 L1PA3long 6157 + 6 6157 918 806 0 1 921 0 4 373 5 0 151 0 40 475 0 1 911 1 0 668 0 4 1025 0 2 769 chain 37965 chr8 146364022 + 37343188 37343613 L1PA5 6144 + 5714 6140 72183 320 0 1 105 chain 8317 chr8 146364022 + 37367915 37368015 MSTB 430 - 13 113 169290 100 chain 15797 chr8 146364022 + 37383393 37383718 L1PB1 5432 + 5127 5420 138962 7 1 0 12 1 0 10 2 0 3 2 0 8 2 0 53 2 1 9 7 6 44 1 0 16 3 0 6 17 7 14 20 17 6 2 0 24 1 0 21 1 0 13 1 0 16 chain 27516 chr8 146364022 + 37433481 37433841 L1PB4 2604 - 52 413 94612 183 5 6 172 chain 16281 chr8 146364022 + 37444863 37445136 L1PB1 5432 - 14 264 137531 14 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 16 6 6 3 0 16 1 0 59 2 1 52 chain 17953 chr8 146364022 + 37445851 37446356 MLT1B 390 - 74 376 132975 49 243 44 170 2 0 26 1 0 6 1 0 7 chain 6447 chr8 146364022 + 37475307 37475562 L1MA4 2864 + 2586 2801 181654 57 2 0 10 7 9 13 140 100 26 chain 14141 chr8 146364022 + 37486557 37486856 L1PB1 5432 + 5146 5416 144068 12 5 1 8 2 0 53 2 1 15 1 0 41 9 8 11 4 0 6 16 6 19 14 13 6 2 0 24 1 0 21 1 0 13 1 0 12 chain 12921 chr8 146364022 + 37497362 37497528 L1PA8 5853 + 5688 5853 148552 8 1 0 4 0 1 59 1 0 93 chain 23247 chr8 146364022 + 37503801 37504208 MSTA 426 - 6 426 114453 55 10 15 60 58 59 26 1 0 5 4 6 38 9 13 116 0 1 20 0 1 5 chain 25332 chr8 146364022 + 37534604 37534900 AluSc 308 - 0 298 103058 31 0 2 265 chain 20872 chr8 146364022 + 37544533 37544995 L1PB1 5432 + 5039 5427 124388 64 50 15 20 2 0 8 1 0 12 5 1 9 2 0 44 13 12 13 4 3 41 1 0 15 2 0 6 17 10 15 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 9 0 21 2 0 5 chain 20815 chr8 146364022 + 37545010 37545267 AluSp 311 + 1 295 124551 108 0 2 39 1 36 109 chain 21648 chr8 146364022 + 37577367 37577653 AluSp 311 + 8 293 121576 24 1 0 100 2 1 144 4 5 11 chain 13857 chr8 146364022 + 37593507 37593744 AluJr 308 + 10 263 145040 64 0 1 13 55 70 105 chain 23698 chr8 146364022 + 37635084 37635384 AluSp 311 - 5 307 112042 226 14 16 60 chain 26813 chr8 146364022 + 37746308 37746613 AluYk4 311 - 5 310 96930 305 chain 145842 chr8 146364022 + 37784600 37786229 SVA_D 2077 + 0 2077 25200 19 5 0 11 2 0 114 0 3 743 0 396 28 0 1 30 0 2 4 0 1 5 0 49 48 0 1 211 0 2 409 chain 30187 chr8 146364022 + 37830968 37831460 LTR28 1034 - 546 1034 84229 39 1 0 12 30 28 26 29 20 61 6 7 60 1 0 3 1 0 84 0 7 29 0 2 110 chain 25817 chr8 146364022 + 37839808 37841683 Tigger3b 1229 + 334 979 100802 204 1 2 21 1506 270 17 0 2 11 0 4 83 1 0 31 chain 28883 chr8 146364022 + 37861796 37862208 LTR7B 505 + 0 490 89525 108 0 10 28 0 2 27 0 38 12 5 29 24 0 2 82 1 0 79 14 13 14 3 7 15 chain 36704 chr8 146364022 + 37862373 37862797 MER41A 554 - 130 554 73956 424 chain 36413 chr8 146364022 + 37866532 37867125 MER50B 698 + 0 617 74351 47 9 5 52 3 4 56 5 6 37 11 37 20 1 0 19 0 1 82 0 1 84 4 0 13 47 51 21 3 2 79 chain 51031 chr8 146364022 + 37870601 37871292 LTR76 689 - 7 689 58288 15 2 0 16 11 11 22 3 0 98 6 0 39 0 6 81 8 5 340 1 0 49 chain 16051 chr8 146364022 + 37872974 37873236 MER4A 717 - 259 589 138212 51 0 40 25 15 16 53 7 19 76 10 25 25 chain 39856 chr8 146364022 + 37877290 37878207 MER4B 649 - 10 649 69524 6 1 0 68 2 1 54 2 0 5 0 2 77 9 0 61 5 0 74 12 15 34 309 0 24 0 2 16 7 49 151 chain 88656 chr8 146364022 + 37879693 37880801 MER11A 1151 - 9 1151 40127 55 1 0 115 0 1 52 1 2 54 10 44 137 6 9 339 0 2 39 0 2 63 1 0 29 1 0 21 8 0 68 0 2 108 chain 9682 chr8 146364022 + 37882034 37882160 MER2 342 + 109 240 162184 32 1 6 93 chain 42616 chr8 146364022 + 37882160 37882741 MER4B 649 + 0 633 65877 30 3 0 65 3 2 60 1 43 93 2 1 49 1 16 274 chain 6882 chr8 146364022 + 37896709 37896789 MER30 238 + 156 236 178335 80 chain 7942 chr8 146364022 + 37896825 37896920 MER47B 469 + 298 393 171369 95 chain 5030 chr8 146364022 + 37897962 37898378 MLT1H 522 - 0 423 194827 33 1 0 7 329 337 46 chain 27128 chr8 146364022 + 37932925 37933231 AluY 311 + 2 309 95835 130 0 1 176 chain 38043 chr8 146364022 + 37939335 37939856 HERV1_LTRa 508 - 0 508 72071 16 13 14 19 1 2 7 0 2 53 0 1 150 11 0 155 12 7 35 1 0 6 1 0 41 chain 16289 chr8 146364022 + 37945072 37945267 AluY 311 + 104 301 137507 22 0 1 109 0 1 64 chain 40424 chr8 146364022 + 37949085 37949611 HERV1_LTRa 508 - 0 508 68699 49 1 2 7 0 2 194 0 2 8 11 0 149 10 0 47 1 0 7 1 0 41 chain 53371 chr8 146364022 + 37951099 37953447 THE1C-int 1605 + 0 1594 56791 12 4 6 136 0 2 173 0 6 89 1585 814 33 0 3 23 0 3 6 4 5 40 1 2 49 1 0 192 chain 48491 chr8 146364022 + 37991319 37991852 SVA_C 1631 + 1094 1627 60117 533 chain 3889 chr8 146364022 + 37995348 37995405 MER4C 627 - 0 58 209040 12 3 4 42 chain 23417 chr8 146364022 + 38020339 38020629 AluSp 311 - 10 303 113554 36 1 3 106 0 1 147 chain 22697 chr8 146364022 + 38022594 38022887 AluSq2 311 + 10 300 117091 92 6 5 27 2 0 166 chain 6748 chr8 146364022 + 38023543 38023625 U6 107 - 14 96 179336 82 chain 22878 chr8 146364022 + 38037021 38037295 AluSq2 311 + 20 295 116198 113 0 1 161 chain 4579 chr8 146364022 + 38038197 38038350 MER5A1 166 + 0 163 199888 14 2 0 15 78 90 44 chain 5568 chr8 146364022 + 38055167 38055610 Tigger3b 1229 - 461 600 189402 15 1 16 26 338 19 12 3 0 5 0 3 43 chain 25678 chr8 146364022 + 38064465 38064759 AluSq10 312 - 7 301 101379 294 chain 25089 chr8 146364022 + 38082537 38082888 THE1C 375 + 0 354 104355 125 3 0 10 0 4 64 0 3 46 11 10 5 0 1 82 1 0 4 chain 8407 chr8 146364022 + 38084676 38084795 MLT2B3 573 - 465 573 168811 31 11 0 77 chain 6564 chr8 146364022 + 38087017 38087088 MER41B 635 + 481 552 180757 71 chain 22729 chr8 146364022 + 38171062 38171324 AluY 311 + 38 301 116927 94 0 1 168 chain 29435 chr8 146364022 + 38191103 38191410 AluYb8 318 + 0 307 86921 307 chain 74421 chr8 146364022 + 38207218 38208075 L1PA5 6144 - 13 874 46307 836 0 1 4 0 3 17 chain 31288 chr8 146364022 + 38209196 38209545 L1PA4 6152 + 5798 6152 82005 343 0 5 6 chain 5250 chr8 146364022 + 38247572 38247668 AluJb 308 + 125 230 192510 9 9 0 40 8 26 30 chain 11473 chr8 146364022 + 38332876 38333014 AluSp 311 - 20 158 154406 138 chain 40227 chr8 146364022 + 38336132 38336720 Tigger1 2417 + 1246 1830 68993 14 11 15 25 1 0 7 0 1 4 2 1 98 0 1 10 6 7 102 7 6 264 8 0 29 chain 24078 chr8 146364022 + 38349128 38349420 AluYk4 311 + 9 292 109885 117 5 0 150 5 1 15 chain 43003 chr8 146364022 + 38434081 38434924 MER41A 554 + 15 554 65409 280 0 3 126 321 14 116 chain 5144 chr8 146364022 + 38435605 38435779 MER5B 177 - 0 175 193613 25 97 98 52 chain 3730 chr8 146364022 + 38442494 38442534 MER53 195 - 122 162 211462 40 chain 14162 chr8 146364022 + 38452028 38452205 L1PBa 3878 + 1157 1334 144006 177 chain 54766 chr8 146364022 + 38452211 38453266 L1PB1 5432 + 4567 5387 55862 59 4 0 18 181 0 321 0 3 27 1 4 5 3 0 99 36 14 21 1 0 8 1 0 12 23 16 46 2 1 16 1 0 43 1 0 16 3 0 6 19 9 14 16 13 8 2 0 24 1 0 17 chain 16566 chr8 146364022 + 38452300 38452473 AluYb8 318 + 134 307 136747 173 chain 12259 chr8 146364022 + 38453713 38453868 MER2 342 + 140 295 151156 155 chain 20796 chr8 146364022 + 38456454 38456852 L1PB1 5432 - 10 384 124617 18 1 0 9 6 5 20 1 0 24 2 0 14 1 0 5 2 0 9 12 5 11 1 0 6 2 0 15 1 0 14 1 2 27 2 1 16 2 1 52 2 0 9 5 1 11 1 0 9 1 0 23 1 0 7 0 5 55 chain 14930 chr8 146364022 + 38467185 38467484 THE1B 368 - 62 368 141541 66 87 93 30 5 6 111 chain 44355 chr8 146364022 + 38481867 38482729 MER41A 554 + 0 554 63747 324 308 0 230 chain 4716 chr8 146364022 + 38500542 38500678 L1MC2 1988 + 1772 1988 198326 42 64 142 25 0 2 5 chain 45319 chr8 146364022 + 38510440 38510988 MER41A 554 + 0 554 62694 282 0 1 185 0 5 81 chain 77380 chr8 146364022 + 38518422 38519409 MER11A 1151 + 0 1147 44789 45 10 109 76 1 0 64 4 0 137 0 15 92 0 1 134 6 9 63 0 4 70 6 40 49 0 9 230 chain 22969 chr8 146364022 + 38563764 38564141 THE1D 372 + 2 372 115757 48 9 0 134 62 64 124 chain 7847 chr8 146364022 + 38565804 38565935 MER39B 650 + 263 396 172036 47 8 9 22 9 10 45 chain 112720 chr8 146364022 + 38577201 38578576 LTR12C 1709 + 0 1709 33473 267 1 26 45 0 43 83 0 1 187 0 278 109 4 0 73 1 0 112 11 4 393 5 4 84 chain 22387 chr8 146364022 + 38582734 38583007 AluY 311 + 25 299 118550 107 1 2 165 chain 48249 chr8 146364022 + 38639545 38640078 L1PA3long 6157 - 5 538 60275 533 chain 82523 chr8 146364022 + 38668954 38670030 MER11A 1151 + 0 1151 42528 35 5 20 24 7 15 200 0 11 377 6 9 12 1 2 38 0 4 115 3 0 5 0 35 92 12 13 27 4 1 35 0 4 13 1 0 64 chain 12759 chr8 146364022 + 38679785 38679941 Tigger3b 1229 - 189 346 149217 11 1 2 144 chain 16365 chr8 146364022 + 38690653 38690853 MER107 203 - 0 203 137297 38 7 10 155 chain 27628 chr8 146364022 + 38703528 38703831 AluYc3 301 + 0 301 94272 121 2 0 180 chain 42236 chr8 146364022 + 38724205 38724732 MER41A 554 + 11 554 66352 19 2 1 364 5 22 137 chain 58280 chr8 146364022 + 38725240 38725999 LTR17 781 - 24 781 53820 22 1 23 15 23 1 360 10 9 66 1 0 261 chain 2923 chr8 146364022 + 38726811 38726863 MER5A 189 + 135 188 226638 10 0 2 20 6 5 16 chain 24084 chr8 146364022 + 38748884 38749180 AluSg 306 + 10 306 109836 296 chain 53259 chr8 146364022 + 38774084 38774857 L1MA2 4263 - 150 901 56852 8 1 0 25 6 5 17 7 0 92 1 0 8 1 0 13 2 0 25 0 1 118 3 0 139 1 0 34 7 6 35 19 13 72 4 5 135 chain 21138 chr8 146364022 + 38828043 38828321 AluSq2 311 + 10 288 123419 115 6 5 46 1 2 110 chain 3022 chr8 146364022 + 38849805 38849849 AluJo 314 + 274 314 224582 12 4 0 28 chain 53014 chr8 146364022 + 38869881 38870477 L1PA5 6144 + 5550 6142 57008 585 4 0 7 chain 19207 chr8 146364022 + 38883619 38883860 L1PA8 5853 - 0 237 129513 93 1 0 19 8 7 43 1 0 12 1 0 63 chain 107206 chr8 146364022 + 38888963 38890320 L1P2 5180 - 3823 5178 34912 564 1 0 6 1 0 63 3 4 205 1 0 44 0 1 9 1 0 81 0 2 118 14 13 53 1 0 43 2 1 85 1 2 61 chain 26815 chr8 146364022 + 38894566 38894867 AluYc3 301 - 3 301 96926 186 3 0 112 chain 25497 chr8 146364022 + 38922891 38923201 AluY 311 + 0 305 102234 126 5 0 179 chain 205058 chr8 146364022 + 38923285 38925585 L1PA5 6144 - 13 2322 18852 843 1 2 936 0 8 520 chain 17093 chr8 146364022 + 38967890 38968190 L1MC1 2226 - 332 612 135335 7 13 0 33 1 0 6 17 15 112 19 14 67 0 1 25 chain 21716 chr8 146364022 + 38978877 38979130 L1PA7 6471 + 6218 6470 121329 248 1 0 4 chain 3690 chr8 146364022 + 38979133 38979179 MLT1B-int 1170 + 717 762 212093 32 1 0 13 chain 245254 chr8 146364022 + 38983110 38986367 L1PA11 4918 - 651 4069 16500 8 0 1 98 0 6 61 0 5 17 14 16 285 0 2 46 9 7 10 9 0 44 0 1 60 21 15 344 9 14 95 7 10 479 18 18 36 9 0 281 0 4 12 1 0 52 3 1 389 0 156 402 0 2 15 1 2 208 0 2 18 10 10 186 chain 361117 chr8 146364022 + 38995698 39000000 L1PA6 6164 - 3 4282 11337 145 7 0 7 0 7 18 2 3 5 1 0 661 1 0 323 1 0 4 0 2 367 0 1 557 0 20 135 0 2 382 0 1 124 42 0 45 0 4 158 0 1 4 2 3 850 4 0 61 12 7 53 2 0 329 chain 139253 chr8 146364022 + 39000000 39001873 L1P2 5180 - 3304 5178 26256 394 1 0 36 1 0 385 2 1 146 9 11 104 1 16 195 5 6 17 1 0 50 10 9 60 8 0 22 10 9 171 1 0 50 1 0 24 26 25 143 chain 80159 chr8 146364022 + 39011571 39012500 L1PA7 6471 - 12 943 43523 729 1 0 27 2 0 74 0 5 96 chain 26200 chr8 146364022 + 39017781 39018087 AluY 311 + 4 311 99199 128 0 1 178 chain 48487 chr8 146364022 + 39019544 39020083 L1PA5 6144 - 13 552 60121 539 chain 143661 chr8 146364022 + 39023584 39025542 L1PB1 5432 - 8 1941 25537 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 20 8 19 1 0 21 0 3 20 19 17 53 2 0 9 16 11 13 1 0 20 8 11 379 0 3 7 1 0 93 3 0 127 4 3 152 0 1 11 7 1 53 0 1 315 0 1 72 0 3 149 1 4 67 1 0 132 0 1 37 chain 36306 chr8 146364022 + 39025662 39026077 LTR3 431 - 15 431 74495 165 0 1 250 chain 181198 chr8 146364022 + 39032225 39034566 L1PA10 4194 - 120 2460 20882 48 4 0 77 0 1 167 12 14 342 8 6 31 0 9 388 1 0 55 3 0 19 12 11 44 1 0 238 0 1 11 4 2 494 1 0 4 0 1 377 chain 133719 chr8 146364022 + 39037451 39039054 LTR12C 1709 + 0 1709 27274 428 8 9 27 18 4 182 0 119 68 1 0 274 10 7 106 0 4 481 chain 3154 chr8 146364022 + 39047147 39047204 L1MA4 2864 - 62 117 221860 34 11 9 12 chain 16717 chr8 146364022 + 39049770 39050144 L1PREC2 3366 - 2871 3230 136349 24 2 1 37 0 1 32 7 6 101 104 93 16 7 5 9 1 0 34 chain 538028 chr8 146364022 + 39057154 39063282 L1PA5 6144 - 12 6144 3144 129 0 1 4 1 0 621 1 0 940 6 3 604 5 6 654 1 0 10 3 0 818 0 1 926 0 1 257 0 3 244 0 1 587 0 5 317 chain 32744 chr8 146364022 + 39090586 39091154 MER41B 635 - 0 573 79625 132 88 87 220 29 28 13 0 7 16 8 9 30 1 0 31 chain 111424 chr8 146364022 + 39098360 39099897 THE1B-int 1605 - 17 1605 33831 132 6 14 45 10 11 208 0 4 245 2 12 36 0 7 6 7 0 51 0 1 46 20 21 74 10 0 4 0 1 9 23 31 158 15 40 148 0 2 282 chain 16552 chr8 146364022 + 39102184 39102371 L1PA4 6152 + 5956 6143 136787 187 chain 15491 chr8 146364022 + 39102388 39102593 L1PB1 5432 + 4330 4536 139921 174 6 7 25 chain 7320 chr8 146364022 + 39103140 39103229 MLT1B 390 + 248 337 175298 89 chain 21629 chr8 146364022 + 39127315 39127689 THE1D 372 - 0 372 121662 84 0 5 59 1 0 31 25 27 64 54 46 56 chain 10379 chr8 146364022 + 39132223 39132369 Tigger3b 1229 + 39 186 158789 37 6 7 103 chain 21728 chr8 146364022 + 39165075 39165337 AluY 311 + 49 311 121286 74 1 0 9 0 1 178 chain 33224 chr8 146364022 + 39166389 39166787 L1PA6 6164 + 5758 6156 78841 244 9 9 145 chain 8935 chr8 146364022 + 39178245 39178417 MER30 238 - 0 202 165947 21 0 1 5 25 0 10 0 27 12 5 11 22 3 24 69 chain 27934 chr8 146364022 + 39179359 39179722 THE1B 368 - 0 368 93228 126 0 3 66 2 1 125 2 7 27 2 0 13 chain 7646 chr8 146364022 + 39195013 39195124 L1MA1 4479 - 339 447 173251 33 2 0 28 2 1 46 chain 115798 chr8 146364022 + 39195956 39197453 SVA_B 1603 - 5 1368 32529 8 2 0 447 1 0 150 30 25 43 4 0 42 4 0 19 1 0 12 1 0 372 116 0 245 chain 6372 chr8 146364022 + 39200493 39200567 MER45B 1037 + 776 850 182235 74 chain 37803 chr8 146364022 + 39206335 39206857 MLT2A2 560 + 9 560 72412 114 13 0 57 1 0 128 6 38 56 0 11 147 chain 15272 chr8 146364022 + 39231249 39231588 L1PB1 5432 + 5114 5421 140563 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 37 48 35 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 2 1 10 1 0 6 chain 5178 chr8 146364022 + 39236097 39236228 MER20 218 - 1 116 193248 23 57 41 51 chain 133822 chr8 146364022 + 39252094 39253590 L1PA4 6152 + 4644 6141 27256 497 0 1 999 chain 82418 chr8 146364022 + 39261125 39262065 L1PA5 6144 - 12 953 42577 135 0 1 170 0 1 538 1 0 96 chain 14826 chr8 146364022 + 39279176 39279395 LOR1b 457 - 230 447 141855 21 10 14 154 6 0 28 chain 28551 chr8 146364022 + 39279926 39280280 THE1A 353 - 0 353 90951 243 6 5 105 chain 123259 chr8 146364022 + 39280280 39281832 THE1A-int 1579 - 0 1579 29957 17 1 0 313 0 1 302 5 16 31 2 3 314 4 5 5 0 1 24 0 3 193 2 1 271 2 10 35 0 1 16 0 2 15 chain 28458 chr8 146364022 + 39281832 39282186 THE1A 353 - 0 353 91339 243 2 1 24 1 0 62 0 1 22 chain 271155 chr8 146364022 + 39291230 39295246 L1PA10 4194 + 175 4161 15133 15 3 0 7 3 0 8 35 27 10 10 8 19 8 6 12 1 0 6 211 138 52 0 1 4 6 3 7 0 1 137 6 7 237 0 4 149 0 2 12 0 1 114 1 0 305 4 5 8 0 1 5 8 7 135 10 12 543 5 14 8 0 1 16 0 4 49 0 4 223 6 15 32 0 1 55 0 4 40 6 1 26 3 7 338 1 0 32 11 7 81 0 1 368 14 41 61 0 1 88 1 0 4 0 1 125 0 1 248 5 6 26 9 5 44 chain 19132 chr8 146364022 + 39318257 39318654 L1PB 1623 - 37 416 129732 11 2 0 22 94 70 29 2 1 7 1 0 98 0 12 34 4 0 11 0 1 7 4 5 71 chain 22522 chr8 146364022 + 39318654 39319176 L1PB1 5432 + 4979 5427 117923 110 32 0 16 29 20 8 1 0 13 1 0 10 2 0 3 2 0 8 2 0 53 2 1 16 2 1 36 7 6 16 2 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 11 15 14 9 1 0 7 0 1 10 2 0 5 chain 68992 chr8 146364022 + 39339084 39339906 L1PA7 6471 + 5649 6459 48813 420 15 5 57 1 0 183 1 0 145 chain 8729 chr8 146364022 + 39346571 39346668 L1PA5 6144 - 190 287 167031 97 chain 16583 chr8 146364022 + 39346668 39346857 L1PA5 6144 + 5955 6144 136707 189 chain 3783 chr8 146364022 + 39387586 39387663 MER58A 224 - 122 224 210628 34 20 45 23 chain 36902 chr8 146364022 + 39392982 39393467 LTR15 485 + 0 482 73653 76 6 0 9 1 7 258 4 3 18 6 8 57 4 0 46 chain 15456 chr8 146364022 + 39401022 39401210 THE1B-int 1605 - 0 191 140033 8 0 1 111 0 2 69 chain 29317 chr8 146364022 + 39407367 39407680 AluYb8 318 - 5 318 87454 313 chain 22547 chr8 146364022 + 39422228 39422598 L1PA13 3608 - 120 476 117817 21 1 0 17 10 6 43 7 5 5 1 0 35 2 0 15 6 5 61 3 1 107 10 9 26 chain 74046 chr8 146364022 + 39435924 39436953 MER11A 1151 + 0 1151 46487 65 1 100 43 0 1 21 1 0 64 4 0 149 0 1 94 0 1 31 1 0 6 12 0 108 5 6 118 0 1 12 1 0 3 15 0 11 8 1 11 0 21 17 0 36 14 1 2 44 6 7 163 chain 4468 chr8 146364022 + 39438901 39438958 LTR19C 757 - 0 57 201138 57 chain 70695 chr8 146364022 + 39447322 39448106 L1PA3long 6157 + 5365 6149 48068 784 chain 17676 chr8 146364022 + 39463248 39463597 L1PB1 5432 - 10 325 133758 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 9 7 21 12 0 19 1 0 25 0 2 16 1 0 15 3 2 51 2 0 11 6 2 10 0 3 8 5 0 20 5 0 8 chain 73376 chr8 146364022 + 39475657 39476527 MER11D 897 - 0 897 46848 144 1 0 143 1 24 72 0 1 248 7 8 224 2 5 28 chain 48872 chr8 146364022 + 39481397 39482089 L1PB3 3668 - 536 1234 59827 46 1 4 77 3 0 17 2 0 153 1 7 153 2 0 10 1 0 113 1 5 85 7 8 20 chain 87837 chr8 146364022 + 39504501 39505512 LTR5B 1012 - 0 1012 40434 33 0 1 66 0 1 160 12 4 278 0 5 361 0 2 101 chain 82071 chr8 146364022 + 39508312 39509277 LTR5_Hs 974 - 0 974 42735 63 1 0 404 0 1 43 0 4 296 0 2 7 1 0 132 1 5 17 chain 83538 chr8 146364022 + 39526835 39527751 L1PA4 6152 - 1 917 42102 916 chain 23556 chr8 146364022 + 39530847 39531131 L1PA6 6164 - 7 292 112817 108 0 1 26 1 0 5 0 1 144 chain 257812 chr8 146364022 + 39531131 39534296 L1P2 5180 - 2014 5178 15820 709 2 0 82 0 4 195 1 0 548 0 1 834 1 0 6 1 0 224 1 0 48 0 1 165 6 0 6 6 12 35 4 5 39 6 5 11 0 2 39 1 0 16 43 41 136 chain 25714 chr8 146364022 + 39558384 39558665 AluYa5 310 + 33 310 101239 60 4 0 217 chain 194826 chr8 146364022 + 39569679 39571970 L1PA6 6164 + 3868 6161 19597 36 0 2 446 0 3 72 0 1 1106 0 1 365 0 1 250 6 0 10 chain 4178 chr8 146364022 + 39584218 39584271 LTR54 533 - 370 422 204847 30 1 0 22 chain 29722 chr8 146364022 + 39592881 39593287 L1P2 5180 + 2 405 85752 148 1 0 43 12 10 44 14 13 14 0 1 130 chain 40810 chr8 146364022 + 39594113 39594683 THE1B-int 1605 + 0 636 68161 163 7 9 95 4 8 121 1 65 48 1 0 21 6 3 103 chain 24332 chr8 146364022 + 39601988 39602319 L1PA8 5853 + 5529 5853 108473 35 1 0 45 2 0 70 4 3 16 1 0 42 2 1 19 1 0 93 chain 3786 chr8 146364022 + 39611287 39611330 L1PBa 3878 + 1565 1608 210571 43 chain 5136 chr8 146364022 + 39613628 39613705 MADE1 96 + 2 96 193718 33 3 20 41 chain 11863 chr8 146364022 + 39629463 39629608 L1PA5 6144 + 5999 6144 152771 94 0 1 32 1 0 18 chain 3730 chr8 146364022 + 39651374 39651449 MER21-int 1364 + 826 898 211472 28 12 14 24 5 0 6 chain 36428 chr8 146364022 + 39651952 39652413 LTR2 463 + 0 462 74329 359 15 16 87 chain 479422 chr8 146364022 + 39653612 39659858 L1PA8A 6298 - 8 6262 7747 717 2 0 82 0 2 90 7 0 423 1 2 311 7 14 242 0 1 15 7 9 510 0 1 311 2 1 84 1 0 9 0 4 61 1 0 35 1 0 121 5 7 265 0 4 446 9 17 6 1 0 26 0 1 21 0 2 153 0 1 672 0 2 275 16 29 9 1 0 85 1 0 86 0 3 21 11 15 514 0 1 149 4 2 7 1 0 19 0 6 71 8 2 62 1 0 9 29 23 5 1 0 7 3 2 9 2 7 15 2 0 11 0 1 7 15 13 9 1 0 19 22 13 17 3 0 20 6 1 7 2 0 7 3 0 5 2 1 18 1 0 4 chain 362553 chr8 146364022 + 39667267 39671446 L1PA5 6144 + 1945 6143 11302 238 2 1 129 2 1 180 0 1 661 0 1 7 3 0 6 1 0 319 0 11 829 0 3 547 3 8 75 0 2 1027 5 0 8 0 7 137 chain 62194 chr8 146364022 + 39723863 39724849 MER11A 1151 - 4 971 51807 6 0 1 152 6 7 33 0 7 20 0 1 37 18 0 21 43 0 13 0 26 133 5 7 46 0 12 8 19 7 71 0 1 10 0 1 83 12 13 39 8 14 20 0 1 63 4 0 65 2 0 49 chain 16282 chr8 146364022 + 39727686 39727888 LTR12_ 688 - 0 203 137527 72 1 2 129 chain 42441 chr8 146364022 + 39727903 39728414 MER9a3 513 + 0 513 66090 39 0 1 234 9 10 229 chain 233281 chr8 146364022 + 39729772 39733001 HERVK9-int 4720 + 58 4720 17128 66 1 0 8 1 0 30 1 0 133 0 1 134 1 0 115 320 0 132 0 2 386 2 3 110 0 185 31 0 1 99 5 930 192 0 2 33 51 689 919 0 1 187 0 1 272 chain 43564 chr8 146364022 + 39733001 39733525 MER9a3 513 + 0 513 64727 13 9 0 265 0 1 41 5 0 134 0 2 57 chain 44431 chr8 146364022 + 39733580 39734147 LTR12 884 - 187 884 63660 315 7 5 156 0 91 24 0 41 65 chain 470751 chr8 146364022 + 39736850 39742450 HERV9-int 5642 - 44 5642 8010 14 1 0 59 1 0 24 3 2 37 7 5 228 1 0 2199 0 1 294 0 3 1237 2 0 65 16 19 31 0 1 10 0 1 124 0 1 136 3 0 63 3 0 8 5 8 237 1 0 791 chain 62968 chr8 146364022 + 39742478 39743260 LTR12 884 - 0 884 51461 174 0 103 214 0 1 16 2 0 376 chain 8598 chr8 146364022 + 39752966 39753113 LTR8 732 - 561 701 167738 8 0 6 12 15 8 95 6 0 11 chain 28313 chr8 146364022 + 39785970 39786268 AluYk11 308 + 0 298 91894 298 chain 27735 chr8 146364022 + 39800974 39801277 AluYf4 310 + 0 303 93920 303 chain 44155 chr8 146364022 + 39801880 39802434 LTR6B 557 + 0 557 64003 43 5 4 312 0 1 121 22 24 29 0 1 22 chain 10495 chr8 146364022 + 39804175 39804302 LTR8 732 + 587 714 158267 127 chain 47287 chr8 146364022 + 39804749 39805302 LTR10C 591 + 0 555 60975 508 0 2 45 chain 3650 chr8 146364022 + 39825560 39825602 L1MC3 1789 + 105 147 212791 42 chain 21754 chr8 146364022 + 39826107 39826390 L1PA8 5853 + 5571 5848 121193 38 2 0 73 1 0 7 1 0 51 2 1 19 1 0 88 chain 538342 chr8 146364022 + 39873916 39880061 L1PA5 6144 - 0 6144 3094 13 3 0 980 0 5 244 4 0 273 1 2 945 0 1 422 0 3 92 1 0 53 0 1 795 0 1 311 6 5 964 1 0 4 1 2 499 4 0 529 chain 10340 chr8 146364022 + 39880211 39880327 L1P2 5180 + 1013 1129 158943 116 chain 3229 chr8 146364022 + 39896052 39896116 MER5A 189 - 114 189 220434 34 16 27 14 chain 103017 chr8 146364022 + 39903998 39905590 L1PB1 5432 + 3852 5420 35983 76 4 0 64 0 1 55 38 9 170 0 1 149 0 1 6 0 10 140 1 0 86 1 0 7 13 15 287 0 1 77 6 32 7 0 1 5 1 0 51 7 4 7 1 0 24 1 0 5 31 24 53 2 1 15 0 1 12 0 1 26 5 4 16 1 0 4 61 46 24 1 0 21 1 0 13 1 0 16 chain 12825 chr8 146364022 + 39923426 39923612 L1PB4 2604 + 2386 2572 148952 110 5 6 50 1 0 20 chain 37466 chr8 146364022 + 39926130 39926567 L1PA6 6164 + 5732 6162 72865 280 7 0 150 chain 46325 chr8 146364022 + 39944852 39945479 LTR9B 643 + 0 629 61752 65 0 3 107 0 1 157 1 0 96 15 16 25 11 9 150 chain 7425 chr8 146364022 + 39949656 39949751 MER4A1 472 - 295 390 174618 95 chain 22911 chr8 146364022 + 39993375 39993641 L1PA8 5853 - 413 679 116057 266 chain 31181 chr8 146364022 + 39993641 39994059 L1PA8 5853 + 5444 5853 82194 76 0 2 22 4 0 20 1 0 40 6 4 71 1 0 9 1 0 55 1 0 17 1 0 93 chain 374270 chr8 146364022 + 39995751 39999989 L1PA4 6152 - 12 4277 10952 1971 0 1 123 0 1 18 0 1 335 0 4 433 0 3 41 1 0 26 1 0 440 0 22 521 1 0 77 3 1 247 chain 158092 chr8 146364022 + 40000000 40001857 L1P1 4361 - 2503 4360 23578 1857 chain 2906 chr8 146364022 + 40005231 40005295 MIRc 230 + 117 195 226937 23 18 32 23 chain 46486 chr8 146364022 + 40033623 40034244 MER4B 649 + 1 628 61614 106 10 6 79 2 0 172 5 16 145 0 1 102 chain 4438 chr8 146364022 + 40041404 40041471 L1MC1 2226 + 1967 2029 201471 11 3 0 15 2 0 36 chain 24735 chr8 146364022 + 40048399 40048688 AluSg 306 + 8 297 106249 289 chain 13040 chr8 146364022 + 40068903 40069047 L1PA4 6152 + 6007 6151 148076 144 chain 21734 chr8 146364022 + 40079997 40080252 AluSg7 307 - 53 307 121264 128 1 0 126 chain 14945 chr8 146364022 + 40084360 40084554 Tigger3a 397 - 48 245 141487 21 5 8 168 chain 7966 chr8 146364022 + 40099860 40099978 L1PB1 5432 - 1924 2032 169374 53 0 1 8 11 0 46 chain 137014 chr8 146364022 + 40099978 40102178 L1PB1 5432 + 3501 5413 26638 225 4 6 56 1 3 171 0 1 63 22 3 405 0 1 73 1 4 94 0 2 20 3 0 134 6 4 38 1 0 98 0 7 193 264 13 23 1 0 7 2 1 10 6 2 9 2 0 52 1 0 12 7 6 44 1 0 15 1 0 4 18 8 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 9 chain 7928 chr8 146364022 + 40106532 40106617 L1PA4 6152 + 5815 5900 171454 85 chain 3606 chr8 146364022 + 40112102 40112190 MER31B 477 + 103 243 213554 29 35 87 24 chain 25078 chr8 146364022 + 40120084 40120374 L1PA4 6152 - 0 295 104417 6 0 5 284 chain 5050 chr8 146364022 + 40120375 40120431 L1PA4 6152 + 5811 5867 194633 56 chain 63782 chr8 146364022 + 40183125 40183871 L1PA7 6471 + 5718 6464 51106 746 chain 22949 chr8 146364022 + 40191795 40192111 AluY 311 + 0 301 115863 126 13 0 17 10 12 14 4 0 132 chain 3472 chr8 146364022 + 40225913 40225955 L1MB5 1630 + 6 48 215782 42 chain 30422 chr8 146364022 + 40225963 40226368 MSTA 426 + 7 426 83648 187 2 7 9 0 1 85 0 5 9 8 11 105 chain 46853 chr8 146364022 + 40245619 40246172 MER41A 554 - 0 554 61344 235 0 1 318 chain 33768 chr8 146364022 + 40262145 40262771 LTR39 781 - 163 779 77986 75 12 11 28 18 17 28 20 21 42 23 24 50 61 48 74 1 0 58 0 1 98 5 8 33 chain 27405 chr8 146364022 + 40288322 40288629 AluYf4 310 - 3 310 94951 307 chain 558169 chr8 146364022 + 40289731 40295748 L1PA2 6032 + 0 6021 483 4865 0 5 906 1 0 245 chain 34566 chr8 146364022 + 40295809 40296192 L1PA3long 6157 + 5774 6157 76800 383 chain 51138 chr8 146364022 + 40299508 40300077 L1PA3long 6157 - 1 571 58229 152 1 2 416 chain 29384 chr8 146364022 + 40300096 40300417 L1PA3long 6157 + 5258 5579 87151 321 chain 88144 chr8 146364022 + 40308382 40309714 L1PB 1623 - 135 1520 40320 4 1 0 30 2 1 7 1 0 60 3 0 75 2 5 9 26 0 5 20 0 72 1 2 59 1 0 55 10 25 30 0 2 99 5 0 50 1 9 107 1 0 4 1 2 260 6 10 20 2 1 14 0 3 69 3 2 121 8 7 46 11 91 17 1 0 3 1 0 9 chain 124508 chr8 146364022 + 40353343 40354754 SVA_B 1603 - 0 1601 29541 307 1 0 321 0 164 615 1 0 151 0 28 15 chain 529532 chr8 146364022 + 40363619 40370411 L1PA7 6471 - 4 6470 4240 6 3 0 758 2 0 13 10 7 62 2 1 327 0 1 274 0 22 213 7 19 5 1 0 84 0 4 302 1 2 382 0 1 491 1 0 34 0 1 179 0 4 55 5 4 579 3 0 56 36 0 92 1 0 360 321 0 95 1 0 661 4 0 968 1 2 43 0 6 349 1 0 4 chain 30263 chr8 146364022 + 40373110 40373465 L1PA5 6144 - 8 358 84024 145 1 0 20 4 0 185 chain 18733 chr8 146364022 + 40374018 40374325 PRIMA4_LTR 623 - 291 598 130874 69 1 0 4 1 4 31 44 40 15 0 1 92 3 4 47 chain 8434 chr8 146364022 + 40405144 40405270 L1PA7 6471 - 6 134 168655 6 4 0 20 0 1 29 8 13 59 chain 20324 chr8 146364022 + 40408002 40408338 THE1D 372 + 0 330 126169 52 9 0 22 6 7 57 0 1 27 44 45 119 chain 10404 chr8 146364022 + 40410436 40410565 MER85 139 + 0 139 158666 92 0 10 37 chain 5599 chr8 146364022 + 40412787 40412895 L1MA4A 3247 - 109 212 189091 6 4 0 14 19 18 65 chain 16424 chr8 146364022 + 40419188 40419409 MER30 238 + 0 238 137139 107 4 24 61 3 0 46 chain 33314 chr8 146364022 + 40455729 40456200 L1PA8 5853 - 0 466 78714 90 5 4 8 0 1 6 1 0 34 10 11 11 1 0 9 2 1 70 2 0 46 1 0 46 1 0 124 0 1 4 chain 107320 chr8 146364022 + 40459410 40461131 L1PB1 5432 - 9 1639 34889 19 1 0 13 1 0 17 9 8 20 61 50 15 1 0 45 1 0 15 2 1 42 12 10 9 5 2 13 8 6 20 27 20 16 0 3 117 1 0 12 4 0 54 2 1 34 4 3 149 0 1 73 3 0 3 38 0 7 1 0 4 0 1 132 0 1 185 18 4 28 5 3 6 0 2 273 1 0 148 2 0 45 chain 126177 chr8 146364022 + 40471904 40473370 L1P2 5180 - 2485 3950 29045 1255 1 0 210 chain 93137 chr8 146364022 + 40473370 40474416 L1PA5 6144 + 5098 6144 38618 389 0 1 543 1 0 113 chain 22320 chr8 146364022 + 40483347 40483649 AluSp 311 + 0 300 118823 15 6 5 90 1 2 164 8 6 18 chain 53291 chr8 146364022 + 40486927 40487519 L1PA4 6152 - 1 593 56833 592 chain 549213 chr8 146364022 + 40504580 40510604 L1PA2 6032 + 0 6021 1548 256 1 0 513 0 1 86 0 1 3791 4 0 1373 chain 24342 chr8 146364022 + 40536868 40537250 THE1C 375 - 0 375 108409 18 8 7 165 8 8 57 3 0 29 17 0 8 10 24 59 chain 15246 chr8 146364022 + 40555084 40555257 L1PA7 6471 - 5 177 140644 151 1 0 21 chain 13828 chr8 146364022 + 40556922 40557110 L1PB4 2604 + 2187 2374 145145 68 2 1 118 chain 7181 chr8 146364022 + 40559419 40559678 MSTD 398 + 0 308 176200 15 1 19 53 7 23 22 110 124 23 11 12 17 chain 82288 chr8 146364022 + 40578506 40579395 L1PA2 6032 - 10 899 42632 889 chain 37825 chr8 146364022 + 40579395 40579808 L1PA2 6032 + 4720 5133 71846 413 chain 14166 chr8 146364022 + 40594641 40594849 MER30 238 + 0 238 143995 17 5 23 68 4 19 63 3 0 48 chain 55450 chr8 146364022 + 40597161 40597893 L1PA8 5853 - 0 732 55436 94 5 4 14 2 1 50 1 0 11 1 0 13 0 1 57 2 0 44 1 0 27 0 1 20 0 1 31 1 0 179 4 8 60 3 4 112 chain 26892 chr8 146364022 + 40610409 40610767 L1PA8 5853 - 0 344 96656 93 1 0 19 3 2 51 2 1 5 1 0 15 7 0 59 2 0 46 1 0 53 chain 34067 chr8 146364022 + 40615236 40615746 MLT2A2 560 + 0 552 77514 76 0 1 83 2 0 23 0 22 5 23 0 13 10 11 74 6 38 53 3 14 139 chain 11248 chr8 146364022 + 40647006 40647233 L1MA3 4352 + 4138 4352 155228 98 28 22 21 14 12 26 1 0 9 8 4 22 chain 4184 chr8 146364022 + 40649706 40649781 MADE2 80 - 4 78 204778 30 15 14 30 chain 88941 chr8 146364022 + 40662484 40663458 L1PA3long 6157 + 5163 6147 40030 180 0 10 794 chain 113310 chr8 146364022 + 40718794 40720101 L1HS 6032 + 4718 6031 33277 52 0 1 248 8 13 999 chain 32819 chr8 146364022 + 40720117 40720500 L1PA5 6144 + 5761 6143 79502 240 0 1 130 3 1 10 chain 24339 chr8 146364022 + 40744412 40744708 AluY 311 + 4 301 108425 128 7 8 161 chain 10667 chr8 146364022 + 40762584 40762722 L1PA8 5853 + 5717 5853 157536 23 2 1 19 2 1 92 chain 5932 chr8 146364022 + 40770523 40770593 L1P1 4361 - 42 111 185855 14 1 0 55 chain 53013 chr8 146364022 + 40770593 40771177 L1PA4 6152 + 5564 6148 57009 584 chain 22882 chr8 146364022 + 40772583 40772967 L1PB4 2604 - 173 556 116178 14 5 6 22 69 67 274 chain 7317 chr8 146364022 + 40799301 40799394 MER4D0 881 - 788 881 175319 93 chain 49590 chr8 146364022 + 40800838 40801430 LTR10C 591 - 0 591 59330 160 11 10 421 chain 4677 chr8 146364022 + 40806152 40806247 L1MB3 1562 + 1443 1544 198785 11 2 5 6 2 0 42 0 6 11 5 4 16 chain 2696 chr8 146364022 + 40813082 40813121 Charlie1a 1436 + 244 281 230267 10 2 0 27 chain 17860 chr8 146364022 + 40817579 40817940 L1MA3 4352 + 4027 4352 133215 41 76 51 86 0 2 28 4 0 23 2 0 24 1 0 5 2 1 29 1 0 11 6 2 22 chain 455246 chr8 146364022 + 40821903 40827515 L1PA7 6471 + 666 6467 8569 401 1 16 185 12 11 501 0 1 404 0 174 161 0 4 92 0 1 23 0 1 292 0 1 456 0 1 36 1 0 49 9 10 42 0 1 208 6 2 498 33 32 402 0 4 139 0 1 117 0 1 19 5 0 662 0 2 45 7 8 297 0 1 166 1 2 4 1 0 157 3 0 5 28 24 134 2 0 8 chain 69650 chr8 146364022 + 40871468 40872258 SVA_B 1603 - 23 1171 48549 493 0 358 297 chain 278368 chr8 146364022 + 40875830 40879165 L1PA7 6471 - 10 3350 14735 55 0 1 265 5 6 430 0 1 88 0 1 538 1 0 395 1 5 192 7 4 166 0 3 613 1 0 201 1 0 376 chain 16805 chr8 146364022 + 40882305 40882507 L1PA5 6144 + 5929 6132 136102 54 0 1 148 chain 10831 chr8 146364022 + 40889735 40889973 MER30 238 + 0 238 156860 18 8 30 10 7 8 38 43 18 16 0 2 12 0 6 7 6 0 73 chain 125528 chr8 146364022 + 40890517 40892029 L1PA7 6471 + 4957 6470 29232 662 1 2 51 0 1 36 0 1 424 5 6 168 8 7 144 2 0 11 chain 409884 chr8 146364022 + 40895910 40901273 L1PB1 5432 - 13 5420 9805 15 1 0 13 1 0 21 1 0 24 66 69 41 1 0 14 10 9 43 3 1 10 5 1 12 1 0 7 2 1 25 3 0 8 1 2 184 0 1 7 1 0 103 0 4 39 1 0 4 0 2 45 1 0 80 0 1 7 3 0 13 0 4 130 0 4 44 1 0 209 5 7 201 0 1 281 1 0 667 0 1 57 0 1 72 0 4 86 3 4 192 7 8 53 0 5 84 2 0 35 0 12 396 2 3 274 4 7 89 0 1 108 2 0 23 3 19 104 0 4 11 3 0 712 0 1 97 0 2 29 2 0 5 0 1 79 0 1 85 1 0 235 0 1 145 1 0 7 chain 264052 chr8 146364022 + 40906815 40910704 L1PBa 3878 + 29 3734 15481 9 3 0 7 5 3 12 29 21 4 1 0 5 2 0 10 1 0 37 78 28 48 8 0 3 142 0 21 2 0 12 4 6 267 1 0 183 5 1 51 0 1 116 0 21 85 1 0 79 0 1 554 4 3 6 0 1 48 5 4 30 7 1 215 0 3 60 0 4 34 1 0 16 0 1 326 0 6 44 0 1 39 13 13 105 3 4 25 3 6 32 0 1 63 0 3 307 21 19 17 1 3 166 3 0 131 7 8 66 0 3 306 chain 34501 chr8 146364022 + 40930291 40930713 MER4E1 777 - 8 428 76904 219 17 15 186 chain 56935 chr8 146364022 + 40938933 40939682 MER4E1 777 - 7 775 54571 218 22 16 24 0 1 74 0 1 23 0 1 64 0 19 87 0 1 216 0 2 21 chain 4976 chr8 146364022 + 40954426 40954494 MADE1 96 + 0 92 195407 17 0 25 30 1 0 20 chain 43520 chr8 146364022 + 40955729 40956281 MER41A 554 + 0 554 64781 313 1 2 9 1 0 80 0 1 25 0 1 123 chain 43193 chr8 146364022 + 40983164 40983707 MER41A 554 - 0 554 65180 142 0 4 93 0 1 250 0 6 58 chain 345571 chr8 146364022 + 40988284 40993141 L1PA11 4918 + 8 4508 11744 7 1 0 27 2 0 35 2 0 7 2 1 30 1 0 13 2 0 53 6 5 27 9 6 144 2 13 574 0 1 169 0 1 106 13 15 189 2 1 125 3 1 254 1 2 381 25 25 293 7 10 197 0 3 47 0 1 4 1 0 34 0 1 405 0 1 102 0 2 303 0 1 216 0 1 80 361 0 134 0 1 167 2 4 46 5 6 52 1 0 62 20 17 52 5 0 12 2 0 14 1 0 20 chain 22300 chr8 146364022 + 40994394 40994655 AluSg7 307 - 22 284 118911 153 0 1 108 chain 11042 chr8 146364022 + 41031672 41031841 MSTA 426 - 235 426 156045 28 5 9 22 9 27 105 chain 3893 chr8 146364022 + 41033801 41033842 MLT2B3 573 - 0 41 208989 41 chain 7957 chr8 146364022 + 41044327 41044426 MER82 654 + 64 163 171294 99 chain 2811 chr8 146364022 + 41056291 41056324 MSTA 426 + 1 34 228594 33 chain 8802 chr8 146364022 + 41063333 41063466 MER2 342 - 131 258 166631 37 16 9 55 0 1 25 chain 8698 chr8 146364022 + 41066233 41066407 MSTB1 431 - 163 346 167207 45 12 17 16 30 34 71 chain 84073 chr8 146364022 + 41070319 41071421 L1PA8 5853 + 4749 5853 41874 30 0 5 222 0 4 92 0 3 49 1 17 21 21 3 369 1 0 44 2 0 66 4 3 16 1 0 47 2 1 19 2 1 83 1 0 9 chain 523462 chr8 146364022 + 41082527 41088630 L1PA6 6164 + 0 6162 4815 236 0 2 150 10 16 113 0 2 48 1 0 523 0 3 234 0 24 162 0 2 494 0 1 5 1 0 310 1 0 705 0 1 154 5 0 4 0 1 117 0 21 458 0 1 4 1 0 766 0 3 573 0 1 1028 chain 7130 chr8 146364022 + 41107907 41107988 L1PA8 5853 + 5772 5853 176543 81 chain 9046 chr8 146364022 + 41109610 41109890 L1MB3 1562 - 676 950 165337 59 150 144 71 chain 24130 chr8 146364022 + 41152610 41152898 AluSg 306 + 11 299 109585 288 chain 522807 chr8 146364022 + 41209470 41215550 L1PA5 6144 - 2 6144 4886 848 1 0 799 0 4 146 1 5 1959 0 4 1208 9 0 242 0 13 224 0 1 389 0 7 115 5 29 14 1 15 54 0 1 65 chain 7474 chr8 146364022 + 41263059 41263174 MER96B 391 + 36 154 174318 87 15 18 13 chain 26480 chr8 146364022 + 41264383 41264740 THE1B 368 - 0 368 98123 69 6 5 95 2 0 27 1 0 113 0 15 44 chain 3330 chr8 146364022 + 41275592 41275639 Kanga2_a 737 + 70 115 218408 8 2 0 37 chain 29161 chr8 146364022 + 41279344 41279652 AluYf4 310 + 0 308 88253 308 chain 23504 chr8 146364022 + 41282125 41282426 AluSq2 311 + 2 296 113111 126 1 0 22 0 1 138 7 0 7 chain 17494 chr8 146364022 + 41282685 41283056 THE1D 372 + 0 341 134280 135 0 4 12 128 95 37 5 4 54 chain 33107 chr8 146364022 + 41315676 41316100 MER41B 635 + 0 424 79042 124 0 1 62 1 0 237 chain 14823 chr8 146364022 + 41337495 41337702 LTR24C 604 + 0 209 141876 39 1 3 16 1 0 6 6 7 138 chain 262953 chr8 146364022 + 41337766 41340766 L1PA5 6144 + 3171 6142 15537 1320 0 4 163 2 0 89 31 0 1395 chain 23242 chr8 146364022 + 41361405 41361652 L1HS 6032 + 5785 6032 114477 247 chain 14758 chr8 146364022 + 41378902 41379124 Tigger2 2703 - 61 289 142077 84 6 9 49 16 18 4 0 1 63 chain 3416 chr8 146364022 + 41384883 41384926 MLT1G1 539 - 432 476 216839 23 0 1 20 chain 8286 chr8 146364022 + 41410900 41411080 Charlie4a 502 + 136 321 169483 48 13 15 4 1 0 26 36 40 52 chain 29229 chr8 146364022 + 41415002 41415316 AluYb8 318 - 5 318 87913 181 1 0 132 chain 29883 chr8 146364022 + 41415322 41415708 MLT2A1 477 + 0 397 85155 13 0 3 126 0 1 25 1 5 6 0 1 203 0 2 12 chain 7143 chr8 146364022 + 41431731 41431846 L1MB2 1706 + 1368 1488 176454 20 19 24 76 chain 138375 chr8 146364022 + 41448963 41451037 HERVE_a-int 7009 - 1 2021 26420 12 1 0 5 3 1 20 36 28 15 4 2 33 2 0 25 1 0 13 3 1 6 1 0 24 7 6 27 3 1 54 3 0 35 2 1 52 4 3 8 1 0 25 1 0 3 1 0 47 1 0 21 1 0 35 5 4 5 2 0 5 1 0 11 7 6 9 1 0 32 1 0 42 1 0 138 2 0 77 4 3 14 1 0 18 2 0 57 1 0 3 1 0 14 2 1 102 2 0 141 0 2 114 2 1 12 1 0 86 1 0 24 1 0 41 1 0 7 1 0 69 1 0 20 8 7 15 1 0 105 16 7 126 0 1 7 1 0 52 8 21 13 39 39 66 chain 85478 chr8 146364022 + 41451063 41452458 Harlequin-int 5206 - 3958 5072 41354 240 0 13 314 1 0 33 1 0 278 2 1 25 1 11 33 3 0 5 14 16 52 309 9 84 chain 33892 chr8 146364022 + 41454311 41454746 LTR2 463 - 28 463 77787 24 1 0 26 4 5 380 chain 146060 chr8 146364022 + 41483238 41484830 SVA_D 2077 - 8 2071 25156 527 0 352 204 0 79 11 0 40 850 chain 45361 chr8 146364022 + 41488833 41489693 MER41A 554 + 0 554 62645 314 0 1 47 0 1 68 308 0 123 chain 10848 chr8 146364022 + 41491358 41491502 L1PA8 5853 + 5705 5847 156793 35 2 1 19 2 1 86 chain 5296 chr8 146364022 + 41576280 41576382 MER20 218 + 39 144 192057 36 26 29 40 chain 28964 chr8 146364022 + 41581295 41581605 AluYg6 310 - 0 310 89162 310 chain 3093 chr8 146364022 + 41637272 41637308 MIR 256 - 143 179 223044 36 chain 8440 chr8 146364022 + 41660866 41660966 HY3 101 + 0 100 168618 100 chain 26190 chr8 146364022 + 41683168 41683531 THE1B 368 + 0 368 99239 93 0 1 75 1 0 21 3 5 4 0 1 14 0 4 12 1 0 6 0 1 5 1 0 64 7 6 56 chain 3561 chr8 146364022 + 41725719 41725924 MER20 218 - 0 195 214310 27 70 70 18 52 53 19 11 0 8 chain 96422 chr8 146364022 + 41770012 41771290 HSMAR1 1287 - 1 1285 37700 71 0 3 251 7 8 15 27 25 249 0 3 97 8 0 9 0 1 405 0 1 5 0 2 16 13 18 105 chain 23231 chr8 146364022 + 41810990 41811274 AluSq2 311 - 9 294 114539 173 1 2 110 chain 19785 chr8 146364022 + 41817197 41817450 AluSc 308 + 4 257 127859 6 1 0 130 11 12 105 chain 42317 chr8 146364022 + 41824817 41825287 L1PA3long 6157 - 1 471 66247 470 chain 83273 chr8 146364022 + 41825287 41826193 L1PA3long 6157 + 4791 5697 42218 906 chain 53799 chr8 146364022 + 41828122 41828755 L1PA5 6144 + 5516 6144 56478 369 1 0 198 2 0 49 3 1 11 chain 4847 chr8 146364022 + 41844627 41844702 Tigger3a 397 + 139 216 196821 39 7 9 29 chain 28904 chr8 146364022 + 41930260 41930563 AluYa5 310 - 7 310 89438 303 chain 6179 chr8 146364022 + 41938631 41938709 L1MB7 1623 - 1428 1506 183747 78 chain 43435 chr8 146364022 + 41980067 41980618 MER41A 554 - 0 554 64889 81 6 10 94 8 7 362 chain 39471 chr8 146364022 + 41980653 41981113 LTR2 463 - 0 463 70057 405 0 3 55 chain 12153 chr8 146364022 + 42050110 42050276 MER2 342 + 143 312 151597 90 0 2 60 2 3 14 chain 11704 chr8 146364022 + 42062259 42062404 AluSg 306 + 0 149 153449 42 2 6 101 chain 49497 chr8 146364022 + 42062424 42063417 MER4A 717 + 0 717 59390 121 0 1 109 7 24 92 301 0 17 0 1 69 0 1 18 6 10 126 3 12 11 9 0 73 1 3 23 1 0 6 chain 14182 chr8 146364022 + 42090303 42090472 MER50 708 - 24 192 143949 136 1 0 32 chain 9292 chr8 146364022 + 42099066 42099224 L1MDa 1598 + 370 537 164099 34 24 34 43 1 0 56 chain 16202 chr8 146364022 + 42104545 42104808 THE1-int 844 + 578 827 137746 96 12 0 30 14 0 47 13 26 28 1 0 22 chain 42631 chr8 146364022 + 42110329 42110858 MER4E1 777 + 68 613 65861 85 0 5 207 0 1 98 5 6 8 0 1 62 1 9 63 chain 50123 chr8 146364022 + 42111156 42111730 LTR10C 591 - 0 591 58926 229 0 12 64 0 2 124 0 3 157 chain 4453 chr8 146364022 + 42118871 42119132 LTR56 451 + 20 274 201305 27 192 185 42 chain 14169 chr8 146364022 + 42119655 42119813 L1PA2 6032 + 5874 6032 143985 158 chain 43512 chr8 146364022 + 42124069 42124927 MER41A 554 + 11 553 64797 344 0 5 37 1 0 41 325 0 32 0 5 78 chain 21511 chr8 146364022 + 42136242 42136525 AluSp 311 + 11 293 122096 34 11 12 224 3 1 11 chain 13034 chr8 146364022 + 42171570 42171738 Tigger3a 397 + 139 307 148108 168 chain 29062 chr8 146364022 + 42185324 42185627 AluYb8 318 - 15 318 88711 303 chain 7515 chr8 146364022 + 42222342 42222458 L1MB3 1562 + 1440 1555 174068 84 9 8 23 chain 12305 chr8 146364022 + 42228215 42228403 MER30 238 - 9 208 150992 37 3 0 54 6 0 7 4 24 77 chain 22680 chr8 146364022 + 42382646 42382916 AluSp 311 + 11 290 117162 71 0 9 199 chain 25388 chr8 146364022 + 42383323 42383627 AluY 311 + 4 308 102745 304 chain 20541 chr8 146364022 + 42414476 42414771 AluSp 311 + 0 293 125504 42 34 32 219 chain 41412 chr8 146364022 + 42414850 42415380 LTR12_ 688 - 0 688 67403 154 0 103 171 7 13 83 0 49 115 chain 471533 chr8 146364022 + 42417059 42422904 HERV9-int 5642 - 0 5642 7987 17 2 0 3 4 0 19 28 5 14 1 0 59 1 0 24 6 5 36 6 3 226 1 0 285 0 1 883 0 1 48 2 0 637 1 2 1279 0 3 464 0 1 111 0 3 406 3 0 23 158 0 74 29 24 182 10 9 181 5 0 11 9 7 299 19 18 279 chain 54586 chr8 146364022 + 42422932 42423593 LTR12_ 688 - 0 688 55979 139 0 2 401 0 25 121 chain 96702 chr8 146364022 + 42430260 42431639 LTR12C 1709 + 84 1709 37645 211 1 0 69 53 62 38 4 6 249 0 118 231 4 51 78 0 1 9 24 0 8 20 13 77 1 2 146 7 108 51 9 6 5 0 2 84 chain 3542 chr8 146364022 + 42454727 42454840 LTR12C 1709 - 672 785 162006 18 2 43 13 43 2 37 chain 12411 chr8 146364022 + 42454856 42455110 LTR12C 1709 - 641 937 150596 23 41 0 128 0 2 5 39 120 18 chain 29010 chr8 146364022 + 42463216 42463523 AluYk11 308 + 0 307 88941 307 chain 23460 chr8 146364022 + 42498671 42499114 Tigger4 2445 + 129 576 113319 12 1 0 3 3 0 5 1 0 7 4 3 6 2 0 11 5 7 38 2 0 45 2 1 4 0 1 55 4 10 53 45 51 77 1 0 4 0 1 53 chain 3803 chr8 146364022 + 42512619 42512668 MER4D 903 - 21 70 210350 10 1 0 25 0 1 13 chain 34584 chr8 146364022 + 42513571 42514043 MER1A 529 - 0 484 76777 24 31 0 14 0 33 360 0 9 26 5 6 12 chain 15266 chr8 146364022 + 42535103 42535777 MSTA 426 + 8 405 140580 22 11 35 129 443 142 69 chain 321376 chr8 146364022 + 42539280 42543667 L1PA6 6164 + 2378 6160 12542 711 318 0 30 0 1 69 0 1 823 321 0 41 1 0 313 1 5 142 0 8 100 0 4 547 0 2 191 0 3 450 0 18 15 1 0 282 5 0 26 chain 105779 chr8 146364022 + 42544454 42545871 LTR12C 1709 + 0 1709 35309 277 0 4 8 10 6 43 0 43 83 12 0 4 50 0 182 0 278 184 1 0 5 3 1 106 0 4 240 1 0 112 0 33 96 chain 5088 chr8 146364022 + 42559187 42559262 MLT1B 390 - 16 97 194199 28 1 6 5 0 1 41 chain 29313 chr8 146364022 + 42572234 42572545 AluYa5 310 + 0 310 87479 132 1 0 178 chain 18810 chr8 146364022 + 42582786 42583010 AluSc 308 + 61 285 130647 224 chain 11066 chr8 146364022 + 42594277 42594452 MER4B 649 - 8 183 155940 8 1 0 50 10 11 10 1 0 60 0 2 22 1 0 12 chain 72733 chr8 146364022 + 42633487 42634535 MER11C 1089 - 20 1089 47149 4 0 1 26 20 19 99 1 0 56 0 1 18 6 24 11 19 1 32 1 2 37 0 1 38 1 0 5 1 5 19 0 1 91 47 46 132 0 2 12 1 0 65 0 4 62 0 9 137 0 2 107 chain 103166 chr8 146364022 + 42641736 42643142 LTR12C 1709 + 0 1709 35957 256 4 5 18 13 28 17 14 15 75 6 8 42 0 2 46 1 0 138 0 278 146 0 2 32 1 0 9 3 1 106 0 4 145 0 4 86 0 3 5 4 1 89 1 0 50 16 15 83 chain 49320 chr8 146364022 + 42643279 42644037 L1PB4 2604 + 1645 2568 59505 45 1 7 29 1 0 171 0 6 20 34 51 255 13 1 20 3 1 25 15 13 23 0 154 86 1 0 16 chain 37109 chr8 146364022 + 42644927 42645402 LTR15 485 - 10 485 73368 18 0 1 13 8 1 45 2 1 97 0 2 16 0 4 126 0 2 90 2 1 58 chain 75700 chr8 146364022 + 42650836 42651806 LTR5_Hs 974 - 0 974 45648 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 118 1 0 33 1 0 134 chain 14836 chr8 146364022 + 42652226 42652564 LTR12C 1709 + 773 1033 141822 64 42 0 15 85 8 117 1 42 14 chain 3222 chr8 146364022 + 42652290 42652332 LTR12C 1709 + 996 1038 146062 42 chain 4680 chr8 146364022 + 42652347 42652408 LTR12C 1709 + 1054 1162 146062 28 1 48 32 chain 23301 chr8 146364022 + 42658238 42658512 AluSg7 307 - 24 299 114194 156 0 1 118 chain 22369 chr8 146364022 + 42671476 42671772 AluSc5 308 + 0 284 118633 131 23 11 142 chain 8555 chr8 146364022 + 42677897 42678003 MER30B 195 - 4 109 167994 95 1 0 10 chain 40818 chr8 146364022 + 42687871 42688383 LTR6B 557 - 2 557 68150 54 0 1 4 0 1 94 2 0 314 0 15 15 7 35 22 chain 22384 chr8 146364022 + 42690189 42690454 AluSp 311 + 2 267 118564 265 chain 36410 chr8 146364022 + 42699331 42700154 MER41C 542 + 11 542 74358 38 0 1 65 8 6 116 318 27 50 1 2 22 6 5 199 chain 2675 chr8 146364022 + 42770280 42770339 MER84 505 - 431 491 230469 24 18 19 17 chain 129808 chr8 146364022 + 42773566 42775096 SVA_B 1603 - 0 1599 28132 6 3 0 394 0 4 27 0 4 149 0 40 158 39 0 236 0 40 493 6 28 4 0 1 15 chain 391378 chr8 146364022 + 42789537 42796055 L1PA7 6471 - 3 4667 10415 7 2 0 152 4 3 24 0 1 104 2 1 164 0 2 395 0 1 871 2 0 63 3 7 852 4 8 55 1 0 199 6 10 19 3 1 32 12 0 17 0 8 324 0 1 506 6 0 186 1 4 35 0 1 239 1856 0 372 chain 156819 chr8 146364022 + 42793876 42795676 SVA_D 2077 - 16 2065 23754 396 1 0 224 0 98 8 0 78 219 0 2 75 0 1 10 21 63 137 0 40 372 0 1 310 13 1 14 chain 23588 chr8 146364022 + 42806802 42807097 AluSc 308 + 0 296 112641 16 1 0 245 0 2 33 chain 11027 chr8 146364022 + 42813759 42813910 L1PA8 5853 - 6 155 156108 87 1 0 16 9 8 38 chain 46641 chr8 146364022 + 42847030 42849154 L1MA3 4352 - 1707 3124 61501 62 4 6 92 15 20 58 1342 618 5 0 1 4 1 0 128 1 0 30 21 25 68 1 0 83 10 13 43 3 2 66 0 5 15 20 21 52 chain 28962 chr8 146364022 + 42863794 42864101 AluYa5 310 - 3 310 89168 307 chain 136629 chr8 146364022 + 42887538 42889170 SVA_D 2077 - 4 2065 26708 591 4 0 70 7 494 14 2 0 51 0 40 197 2 1 115 37 0 6 41 0 458 12 0 11 1 0 13 chain 25380 chr8 146364022 + 42916867 42917156 AluSp 311 - 17 306 102779 289 chain 4441 chr8 146364022 + 42935753 42935900 MER3 215 + 60 214 201432 30 82 89 35 chain 12787 chr8 146364022 + 42947075 42947231 LTR14C 587 - 0 166 149106 64 0 10 92 chain 20445 chr8 146364022 + 42960300 42960787 L1MA5A 2387 - 12 442 125771 13 3 0 7 0 1 14 1 0 4 86 67 37 28 0 11 12 11 17 20 20 18 2 0 48 1 0 29 0 1 8 1 0 25 2 0 11 1 0 88 chain 184940 chr8 146364022 + 42966087 42968207 L1P1 4361 + 2 2131 20503 214 1 2 731 0 4 485 0 3 589 0 1 100 chain 139309 chr8 146364022 + 42968207 42969895 L1P1 4361 - 2672 4356 26236 458 0 1 523 12 5 22 0 3 107 1 0 565 chain 36327 chr8 146364022 + 42971945 42972445 LTR7 482 - 0 481 74466 49 12 14 69 1 0 53 0 31 88 51 0 177 chain 3956 chr8 146364022 + 42989553 42989595 MER61A 341 + 0 42 208052 42 chain 187843 chr8 146364022 + 42989810 42993092 MER61-int 3695 + 8 2615 20255 20 15 1 17 1 0 146 39 0 78 3 2 54 10 6 27 5 9 44 15 1 47 298 0 82 11 15 44 13 14 21 1 0 4 1 2 211 2 0 19 0 1 68 13 15 166 0 5 270 0 4 19 0 2 160 297 0 96 11 10 239 45 25 20 0 5 159 27 0 23 1 5 25 0 1 23 0 3 25 1 0 18 0 6 65 2 0 94 0 1 127 0 3 60 chain 23434 chr8 146364022 + 43003658 43003954 AluSq 315 + 10 303 113453 110 1 0 16 0 1 73 3 0 93 chain 6291 chr8 146364022 + 43008118 43008193 HY5 76 + 0 75 182874 75 chain 5931 chr8 146364022 + 43008917 43009127 L1MA6 2487 - 90 248 185872 20 3 0 38 122 73 27 chain 76211 chr8 146364022 + 43009347 43010205 L1PA4 6152 - 9 870 45357 498 0 3 360 chain 25119 chr8 146364022 + 43032421 43032721 AluY 311 + 10 303 104175 30 1 0 89 6 0 174 chain 171890 chr8 146364022 + 43033772 43036225 SVA_E 1901 - 13 1901 21829 26 0 11 98 6 0 480 0 1 244 345 0 68 1 2 35 53 0 106 173 0 673 1 0 144 chain 6012 chr8 146364022 + 43034640 43034937 SVA_E 1901 - 886 1179 119525 36 0 12 7 4 0 31 3 0 6 1 0 106 50 0 5 1 0 6 1 41 30 0 3 10 chain 3043 chr8 146364022 + 43034834 43034884 SVA_E 1901 - 737 787 145626 50 chain 2842 chr8 146364022 + 43034937 43034971 SVA_E 1901 - 1011 1045 161269 34 chain 3264 chr8 146364022 + 43035075 43035128 SVA_E 1901 - 627 680 128419 53 chain 2370 chr8 146364022 + 43035261 43035288 SVA_E 1901 - 944 971 231246 27 chain 810 chr8 146364022 + 43035288 43035328 SVA_E 1901 - 1442 1484 119525 25 3 5 12 chain 2463 chr8 146364022 + 43035334 43035374 SVA_E 1901 - 841 881 128419 40 chain 524091 chr8 146364022 + 43038792 43044885 L1PA5 6144 - 12 6143 4757 2630 0 1 94 2 0 237 1 0 141 1 0 1573 0 1 286 13 4 333 2 19 374 9 8 217 36 55 14 0 14 130 chain 7940 chr8 146364022 + 43072666 43072783 L1PA3long 6157 + 6031 6157 171385 70 1 5 21 6 11 19 chain 535127 chr8 146364022 + 43115750 43121731 L1PA3long 6157 - 1 6147 3579 844 1 5 731 0 23 1288 0 3 998 0 2 549 0 1 147 0 2 319 1 2 333 0 128 610 18 19 142 chain 8248 chr8 146364022 + 43138884 43138994 L1P4 1494 - 604 708 169693 26 7 1 77 chain 539049 chr8 146364022 + 43162428 43168419 L1PA2 6032 - 1 5999 2984 2214 0 1 735 1 0 984 4 11 618 0 1 4 1 0 551 1 0 201 0 1 677 chain 535965 chr8 146364022 + 43175665 43181721 L1PA3long 6157 - 0 6150 3449 769 0 2 611 0 74 660 0 1 644 0 1 185 0 1 1413 0 14 1074 0 1 700 chain 30864 chr8 146364022 + 43181817 43183076 L1PA6 6164 - 2 1266 21819 63 1 0 516 4 5 166 0 4 309 3 9 8 6 0 133 1 2 49 chain 261128 chr8 146364022 + 43183385 43186436 L1PA5 6144 - 1263 4321 15637 102 0 1 155 0 1 901 0 1 1036 0 3 535 0 1 322 chain 108195 chr8 146364022 + 43186442 43187727 L1PA5 6144 + 4829 6126 34648 260 0 1 201 0 4 238 0 3 466 0 4 120 chain 27088 chr8 146364022 + 43187727 43188832 L1PA6 6164 - 4311 6164 21819 42 9 11 252 8 7 300 0 8 38 0 2 105 0 1 95 7 8 27 6 0 9 0 6 117 0 735 90 chain 4937 chr8 146364022 + 43193045 43193106 THE1D 372 + 311 372 195856 61 chain 62786 chr8 146364022 + 43193946 43194786 L1PA8 5853 + 5010 5846 51544 72 0 2 389 0 1 4 14 15 65 9 8 42 2 0 70 2 1 9 1 0 11 1 0 45 1 0 16 2 1 85 chain 20706 chr8 146364022 + 43195913 43196142 L1PA4 6152 + 5908 6138 124943 219 0 1 10 chain 523934 chr8 146364022 + 43199586 43205713 L1PA4 6152 - 1 6151 4773 332 1 2 553 0 10 383 1 0 34 8 7 201 1 0 873 8 9 65 1 0 240 0 1 270 1 0 98 1 0 1227 0 1 432 0 1 298 1 0 913 1 2 59 0 14 125 chain 5563 chr8 146364022 + 43213390 43213478 L1PB3 3668 - 102 186 189450 37 3 1 25 1 0 5 1 0 16 chain 29163 chr8 146364022 + 43226604 43226914 L1HS 6032 - 0 310 88233 310 chain 90686 chr8 146364022 + 43237092 43238480 MER57-int 2662 - 1208 2620 39394 14 2 1 35 3 0 11 33 55 20 0 3 125 1 0 4 0 1 76 2 0 8 0 4 13 1 0 47 0 3 221 2 0 71 4 0 257 13 25 95 0 1 45 2 0 81 14 18 28 8 11 73 1 0 8 42 30 28 chain 539997 chr8 146364022 + 43246217 43252223 L1PA2 6032 - 5 6027 2816 8 5 0 1770 0 1 179 0 20 3302 0 1 490 6 5 246 chain 28832 chr8 146364022 + 43254177 43254486 AluYa5 310 - 1 310 89753 309 chain 486361 chr8 146364022 + 43267485 43272968 L1PA3long 6157 - 1 5613 7506 365 0 1 490 1 0 665 1 0 2638 0 1 1053 0 1 34 1 129 235 chain 160630 chr8 146364022 + 43273772 43275680 SVA_D 2077 - 6 2071 23246 638 0 176 153 1 2 43 7 6 16 0 3 41 1 0 46 59 0 31 2 0 283 0 40 587 chain 1907 chr8 146364022 + 43274718 43274753 SVA_D 2077 - 629 664 155967 35 chain 370190 chr8 146364022 + 43280657 43285012 L1PA5 6144 + 1772 6144 11088 53 0 7 128 0 1 85 4 3 45 0 3 258 0 1 21 0 4 65 2 0 1225 0 2 254 7 8 12 1 0 139 0 1 1063 0 1 993 chain 113878 chr8 146364022 + 43287880 43289660 THE1A-int 1579 + 0 1574 33125 21 5 6 52 0 16 46 38 37 60 0 3 413 0 3 11 4 3 8 0 19 154 264 13 120 0 7 386 0 1 140 3 0 55 chain 5780 chr8 146364022 + 43291105 43291178 HUERS-P3-int 2218 + 1932 2010 187357 25 0 5 48 chain 513616 chr8 146364022 + 43309058 43315194 L1PA4 6152 - 17 6142 5821 786 0 1 567 22 0 425 0 2 290 0 1 777 7 6 26 0 4 117 0 1 29 32 5 390 5 0 9 5 10 174 0 2 7 0 1 359 0 4 904 0 2 173 1 3 193 5 18 711 0 6 122 chain 37287 chr8 146364022 + 43332572 43333047 LTR15 485 - 7 485 73102 21 0 1 14 2 0 6 1 0 88 4 0 69 0 4 123 0 2 42 0 1 76 0 2 29 chain 514735 chr8 146364022 + 43335214 43341333 L1PA4 6152 + 1 6143 5698 152 39 48 279 5 6 113 0 1 471 0 1 1039 11 3 143 2 1 239 0 12 42 1 2 1197 0 1 218 3 0 214 0 1 511 0 1 601 0 5 535 0 1 170 0 1 134 chain 476347 chr8 146364022 + 43343604 43349079 L1PA3long 6157 + 604 6157 7848 164 12 136 542 2 1 1243 0 1 567 0 4 433 0 1 118 0 1 131 0 1 85 78 0 741 0 22 962 0 3 397 chain 3259 chr8 146364022 + 43365749 43365811 L1MC4 1079 - 924 987 219788 16 14 15 32 chain 3483 chr8 146364022 + 43375258 43375384 MST-int 1221 - 797 923 215631 23 58 60 6 1 0 5 0 1 20 2 0 11 chain 31086 chr8 146364022 + 43379977 43380419 LTR2 463 - 0 463 82371 217 11 11 19 35 55 14 0 1 146 chain 3066 chr8 146364022 + 43383649 43383696 MST-int 1221 - 797 844 223660 18 1 0 4 1 2 23 chain 8774 chr8 146364022 + 43386702 43386972 MSTA 426 + 45 408 166795 60 147 240 63 chain 83309 chr8 146364022 + 43391378 43392378 LTR13 1007 - 0 1007 42197 188 3 4 348 1 3 78 0 1 229 0 3 153 chain 44798 chr8 146364022 + 43480851 43481353 L1PA3long 6157 + 5655 6157 63293 502 chain 13238 chr8 146364022 + 43501947 43502104 L1PA3long 6157 + 3584 3741 147329 157 chain 52608 chr8 146364022 + 43502104 43502710 L1PA3long 6157 + 3742 4348 57234 606 chain 159580 chr8 146364022 + 43502710 43504508 L1PA3long 6157 + 4355 6157 23387 952 0 1 834 0 3 12 chain 72530 chr8 146364022 + 43532907 43533706 L1PA2 6032 - 2 801 47251 799 chain 156809 chr8 146364022 + 43542038 43543834 SVA_D 2077 - 21 2077 23757 514 0 225 224 1 0 55 0 2 82 0 36 15 2 0 142 3 0 21 12 15 725 chain 47628 chr8 146364022 + 43549161 43549746 LTR14C 587 - 2 587 60751 200 0 1 190 1 0 194 chain 328574 chr8 146364022 + 43560323 43564169 L1PA4 6152 - 1 3972 12254 1211 5 101 1273 14 41 442 9 10 386 0 1 365 0 1 4 1 0 136 chain 17916 chr8 146364022 + 43579557 43579749 SVA_A 1864 - 15 207 133065 192 chain 70910 chr8 146364022 + 43580398 43581426 MER11C 1089 + 2 1059 47960 244 0 9 58 0 4 22 20 16 31 1 0 146 64 63 93 0 4 7 1 0 38 0 1 4 1 4 225 7 22 66 chain 75043 chr8 146364022 + 43594681 43595649 LTR5_Hs 974 - 0 974 45998 103 20 18 19 8 15 163 1 0 188 0 1 177 1 2 288 chain 72687 chr8 146364022 + 43602820 43603699 L1PA5 6144 - 9 894 47178 137 5 6 552 7 12 178 chain 193869 chr8 146364022 + 43720040 43722368 L1PA5 6144 - 2168 4496 19693 473 0 1 222 0 1 103 1 0 18 6 5 473 0 1 373 2 0 420 0 1 237 chain 173201 chr8 146364022 + 43722368 43724504 L1PA5 6144 + 4001 6138 21659 172 0 1 99 0 11 7 11 1 460 6 1 128 0 1 411 0 1 76 0 2 766 chain 3266 chr8 146364022 + 43738709 43739079 HERVK14C-int 762 - 3 195 219674 23 309 131 38 chain 50546 chr8 146364022 + 43747717 43748749 MER11B 1079 + 12 1063 58617 346 0 5 54 22 23 17 25 23 16 275 282 15 1 0 5 0 3 16 8 9 53 0 1 133 14 18 32 chain 64917 chr8 146364022 + 43751437 43752458 HERVK11-int 2540 + 1236 2235 50605 17 68 37 73 16 17 218 3 0 5 0 3 14 0 1 98 17 12 104 1 0 71 0 1 111 13 12 74 11 15 21 0 9 86 chain 251819 chr8 146364022 + 43756721 43759672 L1HS 6032 - 2278 5256 16135 317 0 7 369 0 1 206 1 16 1758 3 0 5 0 3 7 0 3 114 1 2 170 chain 37575 chr8 146364022 + 43767084 43767534 L1PA2 6032 - 0 418 72715 11 32 0 407 chain 37801 chr8 146364022 + 43767534 43767945 L1PA2 6032 + 5211 5622 72416 411 chain 105746 chr8 146364022 + 43777549 43778740 L1PA2 6032 + 4836 6027 35320 521 0 1 211 2 1 457 chain 32155 chr8 146364022 + 43783296 43783672 L1PA2 6032 + 5656 6032 80602 376 chain 41371 chr8 146364022 + 43791707 43792199 L1P1 4361 + 3838 4328 67439 313 1 0 154 1 0 23 chain 206035 chr8 146364022 + 43813846 43816153 L1PA2 6032 + 3698 6032 18790 1855 0 26 132 2 3 318 chain 208166 chr8 146364022 + 46877553 46879859 L1PA2 6032 + 3698 6030 18626 1855 0 26 451 chain 499447 chr8 146364022 + 46891937 46897766 L1PA3long 6157 - 278 6157 6866 489 1 0 1032 0 4 742 0 1 348 0 4 68 0 2 217 0 2 650 0 1 754 0 2 371 0 3 888 0 31 46 0 1 223 chain 174672 chr8 146364022 + 46911731 46913865 L1PA5 6144 - 1 2158 21516 154 1 2 437 0 16 240 1 0 613 0 1 48 10 4 283 0 4 9 0 8 338 chain 74964 chr8 146364022 + 46925811 46926823 MER11B 1079 - 37 1079 46028 60 1 3 187 23 26 21 6 11 400 5 22 82 0 5 110 2 0 115 chain 70856 chr8 146364022 + 46931221 46932092 MER11D 897 + 0 897 47986 593 1 24 62 0 1 102 5 7 108 chain 31776 chr8 146364022 + 47035436 47035959 LTR61 567 + 33 515 81204 11 0 1 10 17 11 48 0 1 77 2 0 76 9 0 72 22 27 36 32 0 68 0 1 43 chain 25601 chr8 146364022 + 47159740 47160057 AluY 311 + 0 311 101721 31 7 0 101 0 1 178 chain 76910 chr8 146364022 + 47175649 47176675 LTR5A 1029 - 0 1029 45022 33 11 12 163 4 5 40 9 5 83 11 11 514 0 13 23 14 0 45 0 6 76 chain 54371 chr8 146364022 + 47177532 47178758 HERVK-int 6823 - 302 1393 56114 12 1 0 5 1 0 25 2 1 5 1 0 8 1 0 8 4 0 4 2 0 10 40 29 29 2 0 12 4 2 13 1 0 12 2 0 10 204 120 16 1 0 11 17 11 23 1 0 7 2 0 75 1 0 4 24 19 44 1 0 13 6 4 43 1 0 6 0 1 55 2 1 136 1 0 22 1 0 175 0 3 20 61 58 39 chain 78414 chr8 146364022 + 47182655 47183655 LTR5B 1012 - 0 1006 44313 28 8 9 224 0 1 79 11 11 144 1 2 136 0 1 275 0 2 94 chain 38748 chr8 146364022 + 47189665 47190172 MER9a3 513 + 0 513 71082 12 1 4 4 1 0 91 0 1 146 1 0 46 0 1 129 0 1 19 1 3 56 chain 366162 chr8 146364022 + 47191520 47196171 HERVK9-int 4720 + 57 4717 11203 66 2 1 8 1 0 26 23 23 121 1 2 286 0 1 179 0 1 80 0 11 127 0 1 123 3 0 1368 3 4 222 12 0 595 2 0 5 0 2 324 2 0 5 1 3 287 7 9 190 0 3 62 0 3 369 0 1 136 1 0 8 0 2 6 chain 67645 chr8 146364022 + 47222048 47222806 L1PA3long 6157 - 1120 1878 49354 758 chain 96818 chr8 146364022 + 47222806 47223914 L1PA3long 6157 + 5049 6157 37604 850 1 0 6 0 1 251 chain 113803 chr8 146364022 + 47243184 47244714 LTR12C 1709 + 11 1708 33147 245 39 40 42 0 43 112 4 5 4 1 0 197 0 159 254 1 0 5 3 1 90 51 20 313 1 0 78 7 6 83 chain 241011 chr8 146364022 + 47260251 47263112 L1PA4 6152 - 9 2895 16722 47 0 1 197 0 1 207 0 6 307 5 7 735 1 0 283 0 4 424 0 1 114 0 1 37 7 15 76 0 1 228 0 1 193 chain 86811 chr8 146364022 + 47342597 47343626 LTR5A 1029 - 0 1029 40852 882 1 0 135 0 1 11 chain 82637 chr8 146364022 + 47351540 47352553 LTR5A 1029 - 0 1029 42489 52 0 1 457 0 2 298 5 1 69 1 14 123 0 4 8 chain 78559 chr8 146364022 + 47367129 47368146 LTR5A 1029 - 0 1029 44237 33 11 12 163 1 2 43 6 5 45 0 1 352 0 1 225 1 0 67 0 6 53 0 4 17 chain 102407 chr8 146364022 + 47427001 47428209 L1PA4 6152 - 15 1271 36161 87 10 53 74 0 2 101 0 3 936 chain 17470 chr8 146364022 + 47473666 47473969 THE1B 368 + 0 306 134331 90 8 5 12 5 7 55 1 0 4 19 23 4 1 0 10 0 4 16 1 0 12 2 1 63 chain 67719 chr8 146364022 + 47483398 47484307 LTR12C 1709 + 432 1709 49357 32 4 6 17 1 0 161 0 278 149 0 2 35 1 0 4 4 2 96 21 14 136 6 0 75 0 101 87 3 5 77 chain 83540 chr8 146364022 + 47498255 47499478 HERVK11-int 2540 + 1056 2230 42101 10 2 0 64 1 0 43 8 7 8 3 0 17 18 8 13 1 0 27 14 3 34 21 1 419 25 20 49 0 1 4 1 0 51 1 0 127 0 1 31 0 1 23 13 15 6 3 0 67 1 6 118 chain 17581 chr8 146364022 + 47500462 47501663 MER11A 1151 + 0 1151 134051 37 22 121 41 1 0 33 822 673 31 8 9 46 28 29 32 6 7 26 7 6 21 1 0 39 chain 181866 chr8 146364022 + 47513347 47515345 L1PA2 6032 - 952 2949 20798 881 2 1 1115 chain 82798 chr8 146364022 + 47515345 47516266 L1PA2 6032 + 5096 6021 42304 86 0 4 835 chain 26244 chr8 146364022 + 47519437 47519736 AluYf4 310 + 0 297 99041 109 1 0 23 1 0 165 chain 300989 chr8 146364022 + 47521871 47525662 L1PA7 6471 + 2697 6470 13375 7 0 1 111 2 1 357 0 1 58 9 10 248 2 1 7 1 0 174 7 0 9 5 9 5 0 2 51 2 0 256 7 5 247 0 1 134 10 26 17 28 0 520 1 0 666 1 0 849 chain 33158 chr8 146364022 + 47539689 47540688 L1PA15 4387 + 3634 4331 78971 13 0 6 7 7 1 136 75 102 33 1 0 19 0 1 25 374 57 70 1 0 26 1 0 55 1 0 12 14 10 10 1 0 50 12 9 38 3 1 11 0 1 4 chain 259457 chr8 146364022 + 47541051 47543907 L1PA3long 6157 - 1724 4580 15733 2856 chain 154097 chr8 146364022 + 47543910 47545617 L1PA3long 6157 + 4450 6157 24083 1707 chain 65620 chr8 146364022 + 47559262 47560032 L1PA5 6144 + 5351 6124 50285 36 1 4 733 chain 226977 chr8 146364022 + 47564460 47567848 HERVK22-int 3844 + 18 3844 17488 731 0 5 409 0 13 183 316 18 126 2 1 57 0 4 67 0 1 13 1 0 16 21 1 323 2 1 4 0 1 39 11 10 240 1 0 5 0 1 58 1 0 56 0 1 68 0 11 155 24 33 12 14 20 47 1 48 201 0 665 88 18 17 70 1 0 7 chain 18343 chr8 146364022 + 47568329 47568578 L1PA7 6471 + 6212 6461 131947 93 13 13 143 chain 30206 chr8 146364022 + 47588381 47588723 L1PA4 6152 - 0 342 84174 342 chain 260241 chr8 146364022 + 47589101 47593258 L1PB2 3958 - 125 3933 15685 58 1 0 23 2 0 73 1 0 61 1 0 73 1 0 94 2 0 12 2 0 28 9 0 30 22 10 10 11 14 40 3 1 90 0 1 30 5 0 5 1 0 76 0 13 78 1 6 83 1 0 323 0 2 51 2 0 50 0 2 10 8 4 16 0 2 5 2 0 152 15 18 308 2 1 27 0 2 156 23 25 76 0 1 46 6 7 39 0 1 248 0 3 61 9 8 90 1 12 216 308 4 101 16 17 227 10 7 44 43 18 44 0 1 152 4 6 112 4 1 49 1 0 5 4 0 36 2 0 24 19 14 16 40 32 27 chain 107915 chr8 146364022 + 47602162 47603427 L1PA4 6152 - 9 1252 34743 139 0 1 539 0 4 166 1 0 273 36 10 111 chain 209241 chr8 146364022 + 47603427 47605839 L1P1 4361 + 3 2416 18545 1227 0 2 478 1 0 706 chain 526258 chr8 146364022 + 47610840 47617002 L1PA4 6152 - 0 6152 4564 849 1 2 242 0 1 44 53 4 656 1 5 843 0 1 295 1 0 110 0 2 785 1 0 361 0 1 887 0 2 769 0 8 50 0 21 214 chain 16324 chr8 146364022 + 47630924 47631331 L1PREC2 3366 - 291 654 137428 12 1 0 4 1 0 11 2 0 38 6 4 35 43 26 23 3 1 15 7 2 16 29 21 14 8 4 42 9 8 24 0 1 23 2 0 39 chain 392898 chr8 146364022 + 47638603 47643172 L1PA4 6152 + 10 6151 10366 412 0 1550 165 0 4 244 0 2 39 0 1 738 0 1 31 4 6 1092 4 12 44 0 4 279 0 1 1182 0 1 77 1 0 236 1 0 20 chain 5593 chr8 146364022 + 47643703 47644358 L1PA3long 6157 - 0 658 24731 7 0 1 419 0 2 229 chain 14019 chr8 146364022 + 47644489 47645992 L1PA3long 6157 + 3867 5370 23145 1503 chain 525782 chr8 146364022 + 47651513 47657651 L1PA4 6152 - 0 6152 4604 795 0 5 1627 8 11 227 0 1 285 1 0 23 0 1 11 0 2 1346 0 1 375 0 2 1440 chain 11391 chr8 146364022 + 47659840 47661174 L1PA3long 6157 - 658 1997 24731 1091 0 5 243 chain 5718 chr8 146364022 + 47661174 47661787 L1PA3long 6157 + 5539 6153 23145 476 0 1 137 chain 519366 chr8 146364022 + 47663766 47669877 L1PA4 6152 - 27 6152 5226 794 23 30 601 0 1 4 1 0 673 1 3 395 0 6 331 0 1 560 1 0 908 0 1 1650 12 10 157 chain 14644 chr8 146364022 + 47675098 47675419 L1PB1 5432 + 5131 5422 142438 4 1 0 11 1 0 12 5 1 9 2 0 52 2 1 10 12 11 39 1 0 15 1 0 4 1 0 11 9 0 10 8 6 4 1 0 15 2 0 24 1 0 21 1 0 8 6 5 18 chain 24373 chr8 146364022 + 47690101 47690377 L1PA4 6152 - 0 281 108237 7 0 5 269 chain 542578 chr8 146364022 + 47708953 47715090 L1PA3long 6157 + 4 6157 2410 766 2 11 673 0 1 2004 0 2 227 5 1 257 0 1 202 0 1 203 0 4 1650 1 3 147 chain 75413 chr8 146364022 + 47724582 47725430 L1P1 4361 + 1836 2685 45813 844 0 1 4 chain 8706 chr8 146364022 + 47742672 47742777 U6 107 + 1 106 167159 105 chain 421173 chr8 146364022 + 47742778 47747623 L1PA4 6152 + 1298 6151 9508 79 0 1 1053 0 4 1145 6 7 699 0 2 1101 0 1 218 1 0 543 chain 39685 chr8 146364022 + 47788157 47788671 MER9a3 513 + 0 513 69775 182 6 5 69 21 4 14 0 18 73 1 0 148 chain 245702 chr8 146364022 + 47789267 47792387 HERVK9-int 4720 + 6 4720 16472 14 1 0 6 22 10 13 8 5 4 1 0 66 1 0 9 1 0 25 17 16 921 0 1 254 1 6 140 4 928 350 13 692 284 1 0 691 2 1 6 0 1 187 22 28 56 chain 40823 chr8 146364022 + 47792387 47792895 MER9a3 513 + 0 508 68139 193 10 8 253 0 2 52 chain 505738 chr8 146364022 + 47805614 47811723 L1PA6 6164 + 14 6152 6481 321 7 11 25 25 32 97 11 10 277 0 17 943 0 2 584 0 1 249 0 1 139 0 1 459 1 2 4 0 1 80 0 3 126 1 0 124 3 0 456 11 0 391 0 4 941 1 0 311 0 1 204 0 1 158 12 13 12 1 2 135 chain 117823 chr8 146364022 + 47852345 47853783 L1P1 4361 + 4 1444 31856 201 0 1 24 0 1 6 1 0 458 1 2 747 chain 523412 chr8 146364022 + 47853787 47860222 L1PA3long 6157 + 5 6157 4821 573 0 1 124 1 8 335 1 0 184 32 33 927 1 0 765 0 2 250 288 0 832 7 6 272 1 0 324 2 0 1516 chain 22555 chr8 146364022 + 47857007 47857268 L1PA3long 6157 - 1 274 117790 29 0 12 232 chain 24805 chr8 146364022 + 47872121 47872597 L1PB1 5432 - 15 460 105865 13 1 0 13 1 0 21 1 0 26 2 0 13 10 7 27 14 1 13 7 6 40 1 0 16 2 1 52 2 0 7 19 14 9 1 0 24 1 0 4 3 0 5 1 5 103 1 2 23 chain 86335 chr8 146364022 + 47877885 47878923 MER11C 1089 - 26 1089 41029 85 0 8 232 3 4 35 1 0 7 0 4 367 0 4 62 0 9 246 chain 9655 chr8 146364022 + 47895306 47895431 HSMAR2 1300 + 1126 1255 162325 103 0 4 22 chain 86761 chr8 146364022 + 47895439 47896370 L1PA2 6032 - 9 940 40862 931 chain 39968 chr8 146364022 + 47898536 47898975 LTR7Y 441 + 0 439 69369 439 chain 29322 chr8 146364022 + 47900305 47901684 MLT2A1 477 - 0 477 87432 6 0 4 40 927 33 9 4 0 174 21 16 21 15 12 162 chain 532720 chr8 146364022 + 47930337 47936367 L1PA3long 6157 + 4 6149 3883 149 1 2 147 28 4 470 0 128 70 0 1 179 8 11 84 1 0 604 0 5 1141 1 0 2342 0 1 47 0 1 598 0 1 160 chain 120350 chr8 146364022 + 47943656 47945372 L1PBa 3878 - 2122 3797 30922 142 4 0 142 0 1 398 0 1 95 0 4 160 0 4 51 9 13 46 0 1 110 9 19 40 1 0 3 1 0 247 9 8 37 0 1 20 1 0 48 74 19 47 1 0 9 2 0 5 1 0 4 chain 10031 chr8 146364022 + 47953440 47953570 L1PA5 6144 + 6007 6132 160418 66 13 8 51 chain 55573 chr8 146364022 + 47972251 47972995 MER4E1 777 + 0 770 55371 16 5 1 307 1 0 7 1 20 66 0 1 4 1 0 10 0 1 84 0 1 26 1 7 57 0 4 158 chain 92275 chr8 146364022 + 47977963 47979719 MER57-int 2662 + 40 1507 38886 30 59 46 58 12 18 43 0 4 17 1 0 61 2 0 25 0 3 79 0 1 17 321 0 18 28 29 89 1 2 132 0 1 29 16 12 65 2 0 45 0 1 202 4 3 26 8 4 5 2 0 84 4 33 5 0 3 78 0 4 57 0 3 15 0 7 10 2 0 41 1 0 62 chain 6995 chr8 146364022 + 47982944 47983030 U3 216 - 8 94 177495 86 chain 223714 chr8 146364022 + 47983037 47985752 L1PA7 6471 + 3728 6469 17670 81 0 4 197 0 2 511 0 4 429 0 1 209 2 1 163 0 3 132 0 6 32 0 3 118 1 5 840 chain 26186 chr8 146364022 + 47985986 47986272 L1PA2 6032 - 3 289 99255 286 chain 486326 chr8 146364022 + 47987137 47992783 L1PA4 6152 + 1 6151 7507 295 1 2 432 0 1 501 5 4 70 0 1 6 1 0 870 1 0 136 0 1 921 0 1 698 0 1 243 0 1 159 0 4 290 0 5 341 1 493 421 1 0 253 chain 17473 chr8 146364022 + 47992805 47993004 L1PA4 6152 + 5474 5673 134320 199 chain 41104 chr8 146364022 + 47993007 47993476 L1PA4 6152 + 5673 6143 67764 292 0 1 177 chain 79830 chr8 146364022 + 47999283 48000174 L1PA3long 6157 + 5265 6157 43670 558 0 1 333 chain 536445 chr8 146364022 + 48006712 48012603 L1PA2 6032 - 124 6032 3386 217 0 1 1856 0 2 15 0 1 946 1 0 284 0 5 727 0 3 128 0 4 591 0 2 1126 chain 7638 chr8 146364022 + 48017019 48017154 L1MC1 2226 + 1915 2047 173298 51 29 26 55 chain 29251 chr8 146364022 + 48020734 48021051 AluYb9 318 - 1 318 87786 317 chain 63542 chr8 146364022 + 48025392 48026218 L1PA8 5853 - 6 843 51224 87 1 0 16 30 32 12 0 9 8 6 5 12 0 1 21 0 3 33 2 0 598 chain 5482 chr8 146364022 + 48043444 48043510 U6 107 - 41 107 190196 66 chain 3874 chr8 146364022 + 48047757 48048283 L1MA4A 3247 - 148 627 209250 28 145 132 17 25 15 17 60 53 9 1 0 10 183 169 5 2 0 24 chain 101236 chr8 146364022 + 48049142 48050300 SVA_A 1864 + 18 1851 36453 320 0 5 302 0 666 93 1 0 9 0 1 10 0 4 423 chain 192635 chr8 146364022 + 48064397 48069896 L1PA6 6164 + 0 5826 9690 344 22 10 155 2 1 193 0 24 201 0 4 491 9 13 33 1 1043 417 0 1 35 0 2 293 14 4 437 0 2 310 0 6 631 0 5 455 2 0 76 0 2 188 740 0 450 chain 534278 chr8 146364022 + 48069913 48075892 L1PA3long 6157 + 49 6156 3681 102 15 16 95 0 1 137 0 2 374 0 128 1080 1 0 1015 1 0 1671 1 2 519 3 0 103 0 1 716 2 1 144 chain 11350 chr8 146364022 + 48075899 48076223 L1PA6 6164 + 5826 6148 9690 273 2 0 49 chain 28567 chr8 146364022 + 48076734 48077038 AluYa5 310 - 6 310 90881 304 chain 74097 chr8 146364022 + 48087655 48088615 LTR5_Hs 974 - 0 974 46463 103 20 18 19 8 15 163 1 0 188 6 7 175 0 1 5 0 8 272 chain 5391 chr8 146364022 + 48099847 48099906 L1PA2 6032 + 5973 6032 191074 59 chain 13450 chr8 146364022 + 48102240 48102390 L1PA6 6164 - 8 158 146529 150 chain 15207 chr8 146364022 + 48121289 48121944 MER4D 903 + 236 878 140758 83 6 8 22 0 1 4 6 9 13 6 7 8 17 0 10 36 47 56 1 0 32 312 300 12 0 1 24 2 0 5 chain 8596 chr8 146364022 + 48128247 48128393 LOR1-int 1871 - 1476 1616 167754 23 0 6 11 4 0 36 8 1 32 1 0 31 chain 7583 chr8 146364022 + 48139631 48139750 MER30 238 - 0 113 173650 43 1 4 53 2 0 6 7 0 7 chain 22881 chr8 146364022 + 48142265 48142548 AluSq 315 + 30 314 116182 103 0 2 133 1 0 46 chain 73092 chr8 146364022 + 48147264 48148052 L1PA2 6032 + 5243 6031 46985 788 chain 91887 chr8 146364022 + 48199527 48200699 MER11A 1151 - 0 1151 39004 289 3 0 52 32 5 118 3 2 359 0 2 22 1 0 5 1 3 60 0 4 52 8 0 41 5 16 121 chain 23515 chr8 146364022 + 48200877 48201163 AluSg7 307 - 12 299 113041 260 0 1 26 chain 532449 chr8 146364022 + 48210047 48216171 L1PA4 6152 - 0 6149 3917 147 1 0 8 0 1 331 0 1 4 2 1 351 0 4 103 0 1 848 0 4 1171 1 0 47 0 4 9 0 1 398 0 1 300 0 1 118 0 1 16 0 1 1276 1 0 50 0 4 241 2 0 89 0 1 2 0 6 608 chain 24056 chr8 146364022 + 48218394 48218760 THE1C 375 + 0 369 110016 105 4 5 75 37 38 71 1 3 53 1 0 19 chain 40492 chr8 146364022 + 48219347 48219793 L1PA4 6152 - 1282 1728 68600 446 chain 32103 chr8 146364022 + 48219794 48220152 L1PA4 6152 - 1728 2086 79941 358 chain 114203 chr8 146364022 + 48220152 48221420 L1PA4 6152 + 4885 6152 33028 351 1 0 916 chain 522019 chr8 146364022 + 48229549 48235679 L1PA4 6152 + 1 6143 4962 124 39 39 383 0 1 239 1 0 444 5 6 1017 1 0 24 0 1 480 1 0 199 1 0 274 19 18 4 0 1 237 0 1 541 0 4 1161 0 1 102 1 8 833 chain 97855 chr8 146364022 + 48244564 48245610 L1HS 6032 - 0 1046 37315 1046 chain 16101 chr8 146364022 + 48245610 48245834 Tigger3b 1229 - 679 893 138058 184 17 7 23 chain 501822 chr8 146364022 + 48256535 48262670 L1PA5 6144 - 2 6143 6735 7 4 0 771 0 1 207 0 1 4 0 5 1326 5 1 117 0 1 214 0 7 236 17 25 61 1 0 132 0 7 503 4 1 6 2 0 93 0 5 76 0 2 24 4 0 106 7 9 626 7 0 185 8 15 199 13 4 220 25 0 23 0 4 399 3 4 381 7 21 112 chain 14942 chr8 146364022 + 48271680 48271835 AluYb8 318 + 149 304 141496 155 chain 375712 chr8 146364022 + 48313395 48317851 L1PA5 6144 + 1478 6071 10895 333 1 0 101 4 9 392 2 1 489 21 151 203 0 2 766 1 0 421 0 3 308 3 5 355 3 4 487 2 0 324 1 0 239 chain 145111 chr8 146364022 + 48323222 48324872 L1PA4 6152 - 0 1656 25305 844 0 4 53 0 2 753 chain 524573 chr8 146364022 + 48329196 48335318 L1PA4 6152 - 12 6151 4719 147 4 0 174 2 1 510 0 4 639 0 1 316 0 4 270 0 1 132 0 1 763 1 0 11 0 1 360 0 4 503 1 2 358 19 24 959 1 0 158 0 2 794 chain 13236 chr8 146364022 + 48342385 48342529 L1PA3long 6157 - 0 144 147337 144 chain 41318 chr8 146364022 + 48349661 48350112 L1PA2 6032 - 6 458 67512 144 0 1 307 chain 33941 chr8 146364022 + 48350112 48350489 L1PA2 6032 + 5180 5557 77705 338 2 0 5 0 2 32 chain 54269 chr8 146364022 + 48364901 48365506 L1PA5 6144 + 3608 4214 56182 322 1 2 282 chain 23148 chr8 146364022 + 48365533 48365795 L1PA5 6144 + 4241 4503 114897 262 chain 61765 chr8 146364022 + 48365799 48366553 L1PA5 6144 + 4503 5496 52010 355 0 9 179 8 238 212 chain 53215 chr8 146364022 + 48366553 48367207 L1PA5 6144 + 5498 6144 56882 497 10 2 147 chain 332359 chr8 146364022 + 48369187 48373891 L1PB1 5432 - 5 4649 12115 5 2 0 17 2 1 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 12 11 5 29 1 0 45 1 0 15 2 1 53 16 10 10 1 0 9 1 0 24 15 11 327 1 0 147 0 9 98 0 1 52 6 12 182 9 7 36 2 0 56 0 1 186 4 14 237 69 17 383 0 16 14 3 4 49 17 0 16 25 20 125 0 4 75 10 9 111 1 4 49 2 0 18 1 0 4 0 1 68 3 8 21 6 5 157 9 14 109 0 1 43 10 2 418 0 2 115 2 1 76 2 1 44 44 20 167 1 13 126 3 0 6 8 10 362 9 15 37 0 1 26 1 7 161 chain 526576 chr8 146364022 + 48397444 48403567 L1PA5 6144 + 14 6144 4537 370 12 6 231 0 1 133 10 8 155 0 4 210 3 0 424 0 1 64 0 2 687 10 6 898 0 1 24 1 0 4 0 4 426 0 1 989 1 2 625 0 5 245 0 2 498 0 1 103 chain 524433 chr8 146364022 + 48412219 48418304 L1PA4 6152 - 18 6133 4729 141 4 0 784 0 1 1478 6 9 200 5 6 261 0 3 46 1 2 786 0 1 213 0 2 1196 1 0 51 0 4 414 4 0 369 29 43 14 0 9 25 0 1 4 1 0 52 chain 4450 chr8 146364022 + 48436707 48436763 MER53 195 - 115 171 201339 56 chain 12673 chr8 146364022 + 48445821 48446032 L1PA14 3548 + 3245 3443 149560 7 3 0 79 1 0 12 5 1 35 4 2 12 1 0 5 1 0 17 1 0 28 chain 511934 chr8 146364022 + 48461339 48467440 L1PA5 6144 - 6 6144 5981 307 1 0 61 0 1 474 0 5 595 4 3 4 0 1 362 3 1 467 6 5 1500 0 12 26 2 1 378 1 0 337 0 18 410 8 0 166 0 1 417 6 5 93 14 15 176 1 0 66 1 2 80 0 14 135 chain 24971 chr8 146364022 + 48479789 48480080 AluSp 311 - 13 311 104948 16 0 7 275 chain 11786 chr8 146364022 + 48484267 48484437 MER44A 345 - 90 277 153109 60 0 1 13 1 5 61 1 13 34 chain 23727 chr8 146364022 + 48498113 48498534 MSTC 436 - 0 436 111894 6 0 5 55 28 0 25 11 26 31 0 2 17 27 28 34 15 18 31 0 16 121 0 1 20 chain 17023 chr8 146364022 + 48509791 48509983 L1PA4 6152 - 12 204 135528 192 chain 4957 chr8 146364022 + 48527813 48527891 L1MB5 1630 - 1011 1090 195604 47 7 8 24 chain 379064 chr8 146364022 + 48535731 48539961 L1PA4 6152 + 1919 6152 10786 308 6 5 273 0 2 1433 0 1 1405 0 1 805 chain 101951 chr8 146364022 + 48567297 48568441 L1PA4 6152 - 9 1154 36277 4 1 0 607 0 2 532 chain 10802 chr8 146364022 + 48578693 48578840 MER3 215 - 0 153 156974 37 3 9 107 chain 20826 chr8 146364022 + 48613720 48613997 AluSp 311 + 7 290 124516 32 0 1 215 11 16 19 chain 22828 chr8 146364022 + 48623032 48623319 AluSp 311 - 14 301 116452 49 8 0 7 0 8 223 chain 182752 chr8 146364022 + 48664557 48666933 L1P2 5180 + 4 3424 20707 141 6 5 43 2 1 41 0 2 10 6 5 4 1 0 127 0 11 63 0 11 46 0 1 48 1 0 18 1 2 29 0 1 6 21 23 145 1 0 6 2 1 1415 3 1025 71 1 0 4 0 1 114 chain 280867 chr8 146364022 + 48668837 48673144 L1P3 4156 - 14 4156 14589 27 2 1 7 2 0 506 0 41 50 310 0 27 3 2 324 339 0 45 2 0 483 16 1 110 0 2 34 3 24 170 0 463 16 3 0 147 1 0 34 1 0 69 2 1 445 17 0 491 6 7 8 0 1 203 0 2 81 1 0 19 2 1 38 116 115 147 chain 25806 chr8 146364022 + 48684799 48685090 AluSp 311 - 6 297 100842 291 chain 8769 chr8 146364022 + 48705133 48705315 L1MA3 4352 + 4176 4322 166817 59 4 0 24 2 0 19 12 10 23 28 0 11 chain 48629 chr8 146364022 + 48712652 48713175 L1PA3long 6157 + 5630 6153 60009 523 chain 5586 chr8 146364022 + 48724566 48724629 L1PA7 6471 + 6398 6461 189214 63 chain 6157 chr8 146364022 + 48785673 48785753 L1MA3 4352 + 3652 3732 183921 80 chain 4411 chr8 146364022 + 48821792 48821847 MER11A 1151 + 154 207 201789 45 2 0 8 chain 6851 chr8 146364022 + 48825521 48825611 Tigger1 2417 + 50 139 178580 10 1 0 79 chain 34002 chr8 146364022 + 48832390 48832858 MER9a3 513 + 7 512 77613 11 4 29 60 7 8 56 6 7 78 1 0 40 0 10 127 0 1 78 chain 24669 chr8 146364022 + 48833541 48833841 AluY 311 + 10 307 106610 99 2 1 192 2 0 5 chain 26093 chr8 146364022 + 48861020 48861321 AluSp 311 - 13 311 99650 170 2 0 3 1 0 125 chain 32326 chr8 146364022 + 48900072 48900539 LTR8 732 - 242 732 80309 16 10 6 250 15 22 21 1 4 101 0 15 14 0 3 4 1 0 34 chain 34495 chr8 146364022 + 48901548 48902022 LTR21A 479 - 0 475 76917 74 20 19 126 0 3 16 0 1 153 0 1 22 14 11 31 1 0 11 0 1 6 chain 571 chr8 146364022 + 48905849 48906016 HERVFH21-int 991 - 87 197 175209 24 26 0 15 32 5 42 1 0 8 4 1 15 chain 76710 chr8 146364022 + 48906046 48907204 MER11A 1151 - 0 1151 45117 66 1 0 77 20 17 98 1 59 16 0 2 69 0 4 37 3 4 11 6 9 346 0 1 30 0 11 64 1 0 21 1 3 6 1 0 113 0 8 24 92 1 54 chain 233 chr8 146364022 + 48907925 48907993 HERVFH21-int 991 - 435 501 175209 21 9 7 38 chain 36467 chr8 146364022 + 48911328 48911810 LTR21A 479 - 0 479 74281 73 8 7 140 0 3 110 1 0 21 0 1 33 0 1 26 1 0 7 4 1 26 1 0 8 1 0 22 chain 7816 chr8 146364022 + 48911829 48911921 MER84 505 + 0 92 172208 92 chain 36160 chr8 146364022 + 48912288 48912737 LTR2 463 - 0 463 74693 56 1 0 26 0 1 11 0 1 104 2 15 249 chain 652 chr8 146364022 + 48914237 48914327 L1MA8 2339 + 1363 1453 173546 90 chain 20199 chr8 146364022 + 48914378 48914626 AluSz 310 + 11 260 126527 121 0 1 127 chain 121041 chr8 146364022 + 48917620 48919064 L1PA7 6471 - 40 1486 30680 121 1 2 608 0 2 69 5 8 580 6 2 54 chain 8932 chr8 146364022 + 48919064 48919187 L1P3 4156 + 4020 4139 165564 75 1 0 13 2 0 6 2 1 24 chain 22914 chr8 146364022 + 48929938 48930229 AluSp 311 - 15 308 116035 15 2 4 274 chain 12414 chr8 146364022 + 48939910 48940406 L1MB8 1703 - 568 753 150577 22 1 4 12 0 2 103 317 1 41 chain 218938 chr8 146364022 + 49005068 49009162 L1MA2 4263 - 150 3285 17949 7 1 0 36 28 14 90 1 0 9 2 1 150 15 12 108 7 0 24 1 0 26 325 0 30 1 0 19 6 3 17 1 0 86 1 0 105 0 11 115 3 0 47 3 4 417 9 7 32 0 3 75 7 8 10 5 3 49 0 1 34 0 4 184 1 2 79 4 102 14 345 0 97 0 1 110 79 5 117 0 3 44 303 0 24 0 1 183 1 0 127 0 1 197 12 15 205 1 2 65 chain 3250 chr8 146364022 + 49022577 49022668 MLT2B4 540 + 469 540 220016 21 44 24 26 chain 7315 chr8 146364022 + 49064614 49064753 MER44D 709 + 565 709 175337 43 27 29 48 1 2 14 0 2 6 chain 57291 chr8 146364022 + 49074804 49075944 L1PA11 4918 - 351 1186 54164 13 1 0 15 13 9 10 23 14 18 1 0 14 7 8 58 2 1 13 2 1 11 316 25 11 0 1 14 2 0 141 1 6 150 2 0 302 chain 533605 chr8 146364022 + 49075944 49082399 L1PA7 6471 - 2 6471 3752 10 2 0 597 0 3 632 0 1 838 0 1 65 0 1 209 12 15 37 1 13 218 1 0 133 0 4 139 0 4 19 2 1 28 1 0 208 2 0 16 5 7 166 0 4 466 1 2 367 1 0 94 0 5 108 9 1 248 6 7 573 1 0 818 16 0 235 18 28 113 5 0 35 chain 121832 chr8 146364022 + 49094398 49095773 L1PA5 6144 - 1876 3285 30434 109 0 1 786 0 1 119 0 5 34 0 27 327 chain 160581 chr8 146364022 + 49095773 49097608 L1PA5 6144 + 4287 6132 23256 57 0 4 44 0 10 651 4 0 180 0 1 337 1 0 561 chain 31491 chr8 146364022 + 49108689 49109146 MER4A1 472 + 0 472 81656 15 0 2 4 0 1 8 1 0 70 9 11 119 41 52 190 chain 322413 chr8 146364022 + 49120636 49124563 L1PA5 6144 + 2422 6127 12504 737 7 0 5 2 0 316 1 0 1178 225 6 627 5 11 283 0 1 541 chain 19660 chr8 146364022 + 49122882 49123107 L1PA5 6144 + 2908 3133 126837 225 chain 176575 chr8 146364022 + 49134991 49137516 L1PB1 5432 - 2 2462 21296 4 1 0 4 1 0 18 1 0 11 1 0 23 1 0 24 2 0 14 9 6 14 20 10 6 2 0 16 1 0 14 4 10 20 1 0 15 2 1 52 1 0 10 4 0 14 1 0 6 1 0 24 47 0 11 2 0 102 1 0 4 3 4 62 3 0 125 2 1 88 7 6 28 0 2 49 4 0 11 0 1 222 0 2 29 6 13 282 0 3 130 3 0 7 0 3 77 0 1 108 12 13 722 0 2 36 chain 14565 chr8 146364022 + 49141438 49141594 L1PA3long 6157 + 5998 6154 142693 156 chain 48055 chr8 146364022 + 49144623 49145385 HUERS-P3b-int 2065 + 1267 1994 60440 32 1 0 4 0 1 167 1 0 44 27 4 82 2 0 13 1 0 25 1 0 89 3 1 72 1 3 16 4 1 38 3 4 17 24 20 41 1 0 53 chain 8663 chr8 146364022 + 49145737 49145917 LTR12B 2670 + 1616 1963 167408 29 3 0 5 7 184 30 7 6 33 1 0 11 6 4 21 3 0 24 chain 310642 chr8 146364022 + 49146009 49153907 HERV9-int 5642 + 1 4822 12980 56 15 0 37 1 2 503 24 23 169 1 0 26 5 6 181 0 2 23 80 0 74 97 8 172 0 2 333 0 1 634 3505 0 217 1 0 30 4 3 307 0 2 198 7 942 288 328 0 582 chain 25986 chr8 146364022 + 49148501 49148827 LTR17 781 - 455 781 100068 17 10 0 85 5 6 90 0 9 119 chain 243806 chr8 146364022 + 49149139 49151945 HERV17-int 4347 - 0 2827 16565 595 0 1 978 0 1 260 5 7 207 0 12 437 0 5 324 chain 10461 chr8 146364022 + 49155091 49155266 LTR12B 2670 + 1918 2170 158432 22 3 0 23 21 101 106 chain 5743 chr8 146364022 + 49157000 49157074 L1PBa 3878 - 812 897 187702 15 0 11 59 chain 44630 chr8 146364022 + 49157074 49157587 MER9a2 513 - 0 513 63448 513 chain 296514 chr8 146364022 + 49157587 49161182 HERVK9-int 4720 - 0 4684 13617 285 0 1 19 0 2 24 0 1 49 0 79 144 5 11 417 5 60 572 0 4 428 6 8 161 0 3 32 0 924 270 1 0 59 0 20 984 6 5 26 1 0 8 1 0 66 1 0 4 8 5 13 chain 44082 chr8 146364022 + 49162565 49163071 MER9a2 513 - 0 507 64123 207 1 2 298 chain 62169 chr8 146364022 + 49163077 49163912 L1PBa 3878 - 891 1736 51820 159 0 1 100 10 11 7 3 0 27 9 12 74 0 8 446 chain 45136 chr8 146364022 + 49168597 49169109 MER9a1 513 + 0 513 62885 283 0 1 229 chain 57138 chr8 146364022 + 49239768 49240655 L1PA15 4387 + 3491 4356 54438 322 14 12 66 6 0 19 1 2 20 1 0 79 5 0 93 1 0 26 1 0 49 23 28 10 1 0 46 10 7 41 6 4 12 7 1 28 chain 523643 chr8 146364022 + 49245438 49252573 L1PA4 6152 - 9 6152 4798 67 1076 0 775 1 0 15 0 4 2800 0 17 224 0 1 191 7 5 828 8 5 525 0 68 195 1 0 136 0 1 286 chain 73494 chr8 146364022 + 49245534 49246581 MER11C 1089 - 26 1089 46787 134 10 9 56 30 31 91 3 5 38 1 0 4 1 5 111 47 46 147 1 0 65 0 4 57 4 13 247 chain 38978 chr8 146364022 + 49258967 49259469 THE1B-int 1605 + 1105 1605 70769 68 1 2 124 3 0 306 chain 16526 chr8 146364022 + 49259836 49260046 L1PREC2 3366 + 2039 2249 136842 210 chain 229751 chr8 146364022 + 49261350 49264789 L1PA13 3608 + 90 3396 17318 19 6 4 23 7 4 12 12 11 14 3 0 24 38 27 63 2 0 125 1 0 10 0 2 17 2 0 15 8 3 18 1 0 17 8 6 11 2 0 19 20 19 77 2 0 312 0 7 149 0 1 98 3 4 115 0 1 4 1 0 51 1 2 493 6 7 56 3 4 14 1 0 12 1 20 155 7 5 6 0 2 272 1 2 202 4 5 174 14 14 11 93 1 11 14 0 205 0 1 112 4 3 113 22 0 61 1 0 12 0 1 38 1 0 10 chain 439762 chr8 146364022 + 49265219 49270447 L1PA6 6164 + 0 6162 9059 106 0 956 703 2 1 67 1 0 389 0 1 102 21 0 864 1 2 37 1 0 1652 0 1 451 3 4 68 1 0 427 0 1 123 7 7 42 6 0 6 7 13 131 2 0 8 chain 310174 chr8 146364022 + 49298232 49302379 L1PA7 6471 - 1 4200 12998 18 0 6 78 1 4 50 0 2 386 0 1 126 15 1 95 1 0 88 1 0 87 1 360 213 0 1 129 1 0 148 0 8 60 0 2 129 2 1 23 0 10 243 1 0 571 0 1 33 0 4 39 0 4 151 309 0 4 0 1 224 3 0 464 0 3 1 9 0 21 16 1 34 0 1 3 0 1 154 0 1 98 1 0 116 chain 105468 chr8 146364022 + 49317343 49318607 L1PA8A 6298 - 7 1288 35380 72 0 1 265 0 1 380 3 4 77 0 3 429 1 12 37 chain 14515 chr8 146364022 + 49347829 49347980 AluYb8 318 + 156 307 142837 151 chain 57153 chr8 146364022 + 49367955 49368659 L1PA8 5853 + 5158 5853 54431 406 1 0 44 2 0 70 16 12 54 1 0 16 1 0 93 chain 552778 chr8 146364022 + 49369781 49375929 L1PA3long 6157 - 8 6156 1099 1905 0 1 2090 0 1 325 9 6 366 0 3 745 0 1 700 3 0 5 chain 3807 chr8 146364022 + 49375972 49376013 LSU-rRNA_Hsa 377 - 12 53 210286 41 chain 25439 chr8 146364022 + 49380792 49381167 THE1C 375 - 1 375 102500 24 1 0 134 1 0 17 3 0 5 12 15 88 13 0 7 7 21 63 chain 6860 chr8 146364022 + 49383021 49383124 L1MA8 2339 - 73 169 178499 10 1 0 58 6 0 28 chain 500187 chr8 146364022 + 49398147 49404214 L1PA6 6164 + 0 6137 6830 15 0 1 196 0 10 61 8 17 487 0 17 232 0 1 205 6 7 75 0 1 58 0 4 73 0 1 267 3 2 227 0 1 376 19 7 130 4 0 493 0 1 75 5 0 12 1 0 60 0 1 72 6 0 38 9 2 39 0 12 329 0 31 117 0 3 438 0 1 891 0 6 223 0 3 498 0 1 9 1 0 21 0 1 263 0 1 25 chain 4798 chr8 146364022 + 49408271 49408327 MER20 218 + 95 151 197377 56 chain 63343 chr8 146364022 + 49419610 49420428 LTR12 884 + 0 869 51302 204 0 25 18 0 25 67 6 8 34 2 0 82 6 8 4 1 0 394 chain 82658 chr8 146364022 + 49451101 49452029 L1PA5 6144 - 3 930 42482 847 1 0 80 chain 20660 chr8 146364022 + 49452029 49452254 L1PA5 6144 + 4986 5211 125106 225 chain 135856 chr8 146364022 + 49479675 49481334 L1PA8 5853 + 4200 5853 26870 172 1 5 129 0 1 105 1 0 126 0 1 264 1 0 6 2 0 78 1 0 477 2 1 43 4 2 69 1 0 12 1 0 44 10 9 18 1 0 91 chain 6891 chr8 146364022 + 49528234 49528320 L1PB2 3958 + 3753 3838 178268 22 1 0 63 chain 76836 chr8 146364022 + 49632497 49633528 MER11A 1151 + 0 1151 45067 55 0 99 76 1 0 64 4 0 146 0 1 97 1 8 111 1 0 27 5 6 131 8 41 22 18 0 30 0 1 5 0 1 60 6 7 163 chain 43087 chr8 146364022 + 49672014 49672501 L1PA4 6152 + 5660 6151 65309 340 1 5 146 chain 552821 chr8 146364022 + 49706464 49712489 L1PA2 6032 - 0 6032 1092 2971 1 0 475 0 5 725 0 1 1722 0 2 131 chain 502566 chr8 146364022 + 49851644 49859351 L1PA6 6164 - 2 6164 6695 151 8 6 179 2 1 380 1 2 9 19 7 103 1 9 76 3 2 49 4 5 108 5 1 1281 3 4 604 1 0 715 0 1 125 10 11 55 3 1 7 0 2 333 0 4 143 0 19 91 1544 0 42 0 1 612 1 0 96 1 0 108 17 0 295 0 1 245 0 1 277 chain 103127 chr8 146364022 + 49856130 49857245 L1PA2 6032 - 0 1115 35964 1115 chain 37259 chr8 146364022 + 49857245 49857657 L1PA2 6032 + 4484 4896 73028 412 chain 523357 chr8 146364022 + 49866469 49872582 L1PA5 6144 - 4 6141 4830 133 0 1 4 0 1 1053 0 2 81 0 1 428 0 2 274 6 1 198 0 4 281 0 1 468 0 1 271 0 1 862 0 4 262 0 2 390 1 6 173 1 0 84 0 3 180 0 1 77 1 2 123 0 1 74 1 0 687 chain 44448 chr8 146364022 + 49874847 49875359 MER9a1 513 + 0 513 63638 26 0 1 486 chain 277675 chr8 146364022 + 49876673 49880047 HERVK9-int 4720 + 36 4716 14765 13 8 5 4 1 0 66 1 0 7 15 14 17 1 0 1054 0 1 279 0 924 822 0 249 105 0 14 732 0 96 80 0 28 9 0 1 160 chain 44302 chr8 146364022 + 49880050 49880563 MER9a1 513 + 0 513 63820 513 chain 325460 chr8 146364022 + 49906471 49910190 L1PA4 6152 - 16 3762 12370 850 0 4 104 0 1 329 0 4 925 0 1 280 4 0 379 0 5 16 0 3 182 0 13 346 0 1 297 1 0 6 chain 201584 chr8 146364022 + 49910190 49912566 L1PA4 6152 + 21 2408 19033 82 0 1 1102 2 1 4 0 1 204 0 5 28 0 3 363 0 2 591 chain 105227 chr8 146364022 + 49913286 49914454 L1PA2 6032 - 18 1187 35396 139 0 1 1029 chain 114126 chr8 146364022 + 49914454 49915733 L1PA2 6032 + 3605 4874 33062 213 0 1 5 17 5 97 0 1 947 chain 253930 chr8 146364022 + 49925759 49929021 L1PA8A 6298 - 657 3932 16032 452 0 5 131 0 1 227 4 0 179 2 1 38 15 16 446 1 0 42 0 1 34 1 0 4 5 6 73 12 12 4 0 1 89 0 1 223 0 3 182 0 1 68 1 0 31 1 0 336 4 3 455 0 9 42 19 15 30 0 1 89 0 2 22 chain 24548 chr8 146364022 + 49931558 49931915 Ricksha_0 1343 + 963 1308 107266 124 5 6 192 12 0 10 1 0 13 chain 8717 chr8 146364022 + 49937616 49937722 LTR12_ 688 + 365 471 167103 106 chain 116993 chr8 146364022 + 49953452 49954879 SVA_B 1603 - 0 1559 32130 324 0 1 35 1 0 268 1 0 17 5 89 30 0 80 33 0 1 16 1 4 630 50 15 16 chain 26579 chr8 146364022 + 49966069 49966422 THE1A 353 - 0 353 97728 119 1 2 34 1 0 87 1 0 84 0 1 26 chain 19301 chr8 146364022 + 49982231 49982494 AluY 311 + 18 284 129237 113 22 24 84 0 1 44 chain 4334 chr8 146364022 + 49996451 49996512 MADE1 96 - 4 96 202784 43 0 31 18 chain 12029 chr8 146364022 + 50018542 50018754 MER30 238 + 0 238 152080 18 24 28 13 0 2 37 2 22 32 0 6 8 6 0 72 chain 20006 chr8 146364022 + 50029955 50030322 THE1B 368 - 0 368 127126 35 1 0 83 0 33 17 53 23 42 36 35 100 chain 26032 chr8 146364022 + 50071108 50071419 AluY 311 + 0 307 99889 62 1 0 56 3 0 98 1 0 43 0 1 47 chain 20946 chr8 146364022 + 50091990 50092397 L1MA2 4263 + 3717 4111 124128 78 14 11 113 67 66 46 0 3 6 29 18 46 1 0 7 chain 13690 chr8 146364022 + 50094341 50094502 L1PA4 6152 - 1 164 145630 6 0 2 155 chain 59286 chr8 146364022 + 50111884 50112562 L1PA5 6144 - 2077 2759 53233 205 0 4 473 chain 179481 chr8 146364022 + 50112563 50114630 L1PA5 6144 + 4078 6144 21031 113 0 1 436 1 0 666 1 0 850 chain 8434 chr8 146364022 + 50116866 50116974 MSTA 426 + 318 426 168653 108 chain 111164 chr8 146364022 + 50136097 50137338 L1PA4 6152 - 0 1241 33891 1241 chain 90957 chr8 146364022 + 50166543 50167612 MER11C 1089 + 0 1073 39305 220 0 5 288 0 1 53 2 1 177 1 0 328 chain 374327 chr8 146364022 + 50177750 50182754 L1PB1 5432 - 329 5373 10948 51 1 0 5 9 10 40 3 2 351 1 0 23 2 0 195 0 1 267 0 1 201 1 0 64 1 9 68 8 1 80 20 14 35 2 0 5 0 2 11 0 19 34 0 2 618 0 1 159 6 4 38 0 1 35 11 12 254 1 2 48 6 0 9 1 7 103 1 0 6 4 16 108 0 2 116 5 17 300 0 2 146 0 1 193 0 5 12 10 0 16 0 1 91 0 1 172 8 7 259 0 1 231 0 1 6 1 0 151 5 6 45 16 10 318 0 5 17 chain 7965 chr8 146364022 + 50219206 50219311 LTR12D 1347 + 587 693 171252 44 1 2 60 chain 13064 chr8 146364022 + 50219356 50220127 LTR12D 1347 + 468 1049 147974 68 0 31 19 9 8 17 41 41 27 31 27 45 301 222 34 157 20 22 chain 2862 chr8 146364022 + 50219765 50219800 LTR12D 1347 + 1129 1164 227654 35 chain 15244 chr8 146364022 + 50242768 50242949 7SK 245 + 0 181 140653 181 chain 33525 chr8 146364022 + 50245939 50246301 L1PA2 6032 + 5667 6029 78356 362 chain 9424 chr8 146364022 + 50275597 50275794 L1MA4 2864 - 540 743 163431 85 8 6 13 51 59 40 chain 113209 chr8 146364022 + 50299678 50301280 THE1C-int 1605 + 0 1605 33312 12 4 3 426 4 11 171 1 0 48 1 0 5 1 2 74 6 0 61 1 0 4 0 1 177 32 23 149 7 8 65 29 30 55 0 1 8 0 4 204 9 15 48 chain 44503 chr8 146364022 + 50303418 50303929 MER9a1 513 + 0 513 63576 13 0 1 120 0 1 378 chain 28379 chr8 146364022 + 50304317 50304623 AluYb8 318 + 0 305 91663 132 1 0 173 chain 14082 chr8 146364022 + 50305063 50305227 THE1A 353 - 0 164 144285 164 chain 4642 chr8 146364022 + 50318648 50318706 Ricksha_c 1012 + 95 152 199161 52 1 0 5 chain 64001 chr8 146364022 + 50328389 50329197 L1PA8A 6298 - 8 821 51005 71 0 1 346 0 1 161 1 2 134 0 1 76 7 8 12 chain 264028 chr8 146364022 + 50332718 50336336 HERVH-int 3825 + 0 3825 15483 333 1 0 6 1 5 63 64 181 16 1 152 22 1 0 425 1 2 29 43 13 71 1 0 112 9 0 40 0 1 376 0 1 178 1 2 21 48 53 219 28 17 70 0 1 5 5 4 209 2 1 30 17 1 142 4 1 214 6 5 44 3 4 260 2 1 495 chain 59520 chr8 146364022 + 50339199 50340110 LTR12D 1347 + 404 1347 53091 132 0 31 55 0 1 70 114 13 212 28 32 35 0 97 265 chain 9129 chr8 146364022 + 50339456 50339564 LTR12D 1347 + 574 682 162417 108 chain 389688 chr8 146364022 + 50340164 50344941 HERV9-int 5642 + 0 5642 10460 634 4 6 155 4 3 303 12 705 1104 1 2 355 0 1 379 8 179 1402 0 33 196 6 4 35 4 2 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 56160 chr8 146364022 + 50347566 50348410 LTR12D 1347 + 405 1347 55034 68 78 0 62 2 33 65 13 15 22 0 42 208 23 27 63 0 97 240 chain 29169 chr8 146364022 + 50356233 50356653 LOR1b 457 - 8 446 88201 11 0 7 121 7 17 88 8 7 55 1 0 95 2 5 32 chain 20567 chr8 146364022 + 50358034 50358409 THE1C 375 + 0 375 125407 80 5 6 18 39 40 36 0 3 17 20 15 22 11 12 100 1 0 26 chain 13095 chr8 146364022 + 50359885 50360062 MER30 238 - 4 197 147865 40 3 0 65 4 22 51 0 1 14 chain 460665 chr8 146364022 + 50360471 50365672 L1PA3long 6157 + 5 6149 8373 547 0 1 240 0 1 255 0 2 260 0 7 1355 0 930 2532 0 2 12 chain 23299 chr8 146364022 + 50384726 50384999 L1PB1 5432 - 1129 1402 114205 273 chain 4581 chr8 146364022 + 50417338 50417388 THE1D 372 - 19 69 199855 50 chain 134614 chr8 146364022 + 50417405 50418944 L1PA5 6144 + 4557 6127 27091 584 0 28 124 0 1 487 0 1 133 8 9 203 chain 15168 chr8 146364022 + 50438493 50438684 L1PA7 6471 + 6279 6467 140863 182 3 0 6 chain 357733 chr8 146364022 + 50441075 50445248 L1PA5 6144 - 3 4174 11409 144 14 15 662 2 1 4 0 1 92 0 1 164 0 5 188 2 1 275 0 1 239 0 4 232 0 5 937 2 1 603 17 0 261 1 0 4 0 1 330 chain 22061 chr8 146364022 + 50456971 50457287 THE1B 368 - 0 339 119964 49 3 14 114 3 1 9 13 12 114 0 15 11 chain 8137 chr8 146364022 + 50467782 50467902 MER85 139 + 8 139 170297 84 8 19 28 chain 3001 chr8 146364022 + 50514525 50514574 L1MA8 2339 + 2210 2257 225017 24 3 1 22 chain 59310 chr8 146364022 + 50530383 50531130 MER4E 760 + 0 753 53216 23 6 7 110 7 5 218 1 3 80 4 8 31 0 1 267 chain 36159 chr8 146364022 + 50533952 50534428 LTR10F 562 + 0 562 74695 122 1 29 23 0 80 12 21 0 7 2 0 276 0 1 12 chain 9888 chr8 146364022 + 50534550 50534668 MER50 708 + 566 684 161135 118 chain 39303 chr8 146364022 + 50562171 50562736 LTR12D 1347 - 0 938 70317 86 17 47 14 0 200 255 24 0 29 1 18 114 0 150 25 chain 397004 chr8 146364022 + 50564193 50568991 HERV9-int 5642 - 818 5642 10200 72 0 3 420 9 12 860 1 0 299 0 10 800 9 10 67 0 1 1160 1 0 4 1 0 4 2 0 221 0 14 63 10 9 488 0 1 7 0 3 272 5 1 23 chain 48672 chr8 146364022 + 50584576 50585244 L1PA10 4194 + 3480 4150 59979 55 0 4 326 0 1 41 0 1 22 10 14 7 4 0 131 8 7 27 3 0 34 chain 98938 chr8 146364022 + 50588832 50589929 L1PA3long 6157 - 2669 3767 36906 195 0 1 108 0 1 189 1 0 604 chain 242316 chr8 146364022 + 50589929 50592609 L1PA3long 6157 + 3476 6157 16657 1428 0 1 1252 chain 22258 chr8 146364022 + 50606878 50607166 AluSp 311 - 14 301 119084 15 0 1 161 2 0 8 1 2 72 1 0 28 chain 91376 chr8 146364022 + 50618234 50619292 L1PA5 6144 - 14 1080 39170 245 1 0 201 1 9 371 9 10 230 chain 22759 chr8 146364022 + 50623110 50623559 L1PA13 3608 + 3130 3548 116786 31 1 0 80 1 0 32 2 0 63 1 0 19 2 0 5 0 2 5 9 10 14 1 0 5 11 9 38 3 0 5 2 0 18 1 0 20 8 5 13 5 0 14 1 0 4 23 14 12 chain 5674 chr8 146364022 + 50669610 50669702 MER31B 477 + 257 353 188354 14 9 11 30 1 3 38 chain 14175 chr8 146364022 + 50679153 50679343 MSTA-int 1630 + 1428 1624 143971 88 1 7 58 1 0 4 0 1 38 chain 131045 chr8 146364022 + 50686135 50687761 L1PA7 6471 + 4827 6469 27847 128 12 7 658 9 8 209 8 7 440 9 27 139 0 5 14 chain 20714 chr8 146364022 + 50695950 50696232 L1PA8 5853 + 5577 5853 124919 31 2 0 70 2 1 9 1 0 51 3 2 17 4 3 92 chain 82668 chr8 146364022 + 50699356 50700387 MER11C 1089 - 26 1089 42474 274 0 8 66 0 3 113 12 13 249 1 18 57 7 10 252 chain 61714 chr8 146364022 + 50703141 50703811 L1PA2 6032 + 5359 6029 52034 670 chain 11201 chr8 146364022 + 50706776 50707106 MLT2B4 540 + 0 433 155420 94 31 35 45 136 235 24 chain 29745 chr8 146364022 + 50718744 50719292 L1PB1 5432 + 4903 5430 85673 200 0 7 25 1 0 11 1 0 10 19 13 44 9 8 11 1 4 45 1 0 12 7 4 14 9 0 15 3 1 5 1 0 14 2 0 24 23 22 12 1 0 10 1 0 12 1 0 4 chain 6061 chr8 146364022 + 50750787 50750865 MER34A1 583 - 504 583 184738 54 1 2 23 chain 3367 chr8 146364022 + 50785974 50786012 Tigger1 2417 - 1879 1917 217731 38 chain 520959 chr8 146364022 + 50787833 50793826 L1PA4 6152 - 156 6151 5060 260 0 1 2226 1 0 332 1 0 857 1 0 811 6 6 48 0 4 1450 chain 56388 chr8 146364022 + 50806741 50807656 L1PB1 5432 - 18 928 54910 10 1 0 13 1 0 21 1 0 9 39 34 30 21 8 9 1 0 33 0 5 6 6 5 10 2 1 6 0 1 16 0 3 27 2 0 6 7 3 12 1 0 8 1 0 12 15 23 297 0 7 22 0 5 146 14 10 91 0 2 19 chain 22182 chr8 146364022 + 50842273 50842515 L1PA2 6032 - 0 240 119432 5 2 0 235 chain 26088 chr8 146364022 + 50857002 50857296 L1PA3long 6157 + 5862 6157 99680 36 1 0 237 0 2 20 chain 25065 chr8 146364022 + 50864057 50864330 L1PA2 6032 + 5758 6031 104481 273 chain 227397 chr8 146364022 + 50883483 50886084 L1PA4 6152 + 3542 6152 17459 308 1 3 24 0 1 47 0 1 4 1 0 155 0 2 1214 0 2 73 5 6 436 0 1 333 chain 30519 chr8 146364022 + 50905963 50906405 L1PA8 5853 - 0 436 83387 93 1 0 15 10 9 27 1 0 4 28 27 69 3 1 44 1 0 69 0 1 77 chain 13354 chr8 146364022 + 50941158 50941306 L1PA2 6032 + 5877 6025 146867 148 chain 113774 chr8 146364022 + 50991118 50992583 L1PA8 5853 - 0 1472 33155 90 4 3 19 2 1 51 1 0 10 4 3 64 9 7 41 1 0 42 0 3 44 0 1 465 6 0 333 0 1 96 1 16 182 chain 39928 chr8 146364022 + 51000347 51000776 L1PA2 6032 - 7 436 69425 429 chain 163910 chr8 146364022 + 51000776 51002546 L1PA2 6032 + 3828 5598 22819 1770 chain 15012 chr8 146364022 + 51010065 51010229 AluYd8 298 + 123 287 141286 164 chain 294543 chr8 146364022 + 51014120 51017373 L1PA3long 6157 - 0 3252 13729 1717 0 1 4 1 0 512 0 1 4 1 0 741 1 0 272 chain 35749 chr8 146364022 + 51025958 51026367 L1P1 4361 - 33 440 75200 23 1 0 157 1 0 227 chain 9236 chr8 146364022 + 51026367 51026476 L1PA5 6144 + 6031 6138 164371 47 2 0 60 chain 515135 chr8 146364022 + 51060975 51067071 L1PA5 6144 - 4 6084 5654 9 0 2 133 8 15 175 0 1 84 0 1 254 0 1 39 2 7 6 0 1 11 0 1 639 1 0 139 1 0 146 0 1 660 17 0 139 0 1 124 1 0 363 13 12 39 0 3 704 1 5 102 1 0 225 0 1 305 0 2 632 0 3 183 1 0 239 1 0 87 0 1 263 44 17 305 chain 132803 chr8 146364022 + 51078397 51079834 L1PA2 6032 + 4584 6021 27459 1437 chain 50505 chr8 146364022 + 51086394 51087029 L1PA8 5853 - 0 629 58647 93 1 0 19 2 1 61 1 0 71 2 0 44 1 0 340 chain 52308 chr8 146364022 + 51087273 51087852 L1PA4 6152 - 1 579 57422 259 1 0 319 chain 85897 chr8 146364022 + 51098402 51099647 L1PA8 5853 - 0 1201 41195 72 4 0 21 1 0 19 2 1 58 3 4 70 2 0 44 1 0 12 3 0 223 6 4 26 27 0 10 0 6 225 3 1 46 37 24 128 0 5 202 chain 31128 chr8 146364022 + 51099647 51100040 L1PA8 5853 + 4266 4658 82288 74 1 0 318 chain 13700 chr8 146364022 + 51104137 51104335 L1PA8 5853 - 4 198 145599 89 1 0 19 2 1 51 1 0 7 1 0 27 chain 47543 chr8 146364022 + 51106697 51107487 L1PBa1 4058 - 25 784 60817 35 1 0 11 6 5 12 37 30 17 3 0 4 1 0 4 2 1 19 2 0 12 42 33 53 1 2 20 3 4 30 2 0 34 7 6 29 1 0 7 1 0 112 2 0 118 1 0 161 chain 358640 chr8 146364022 + 51117136 51121341 L1PA5 6144 - 5 4222 11386 781 2 1 63 1 0 147 0 5 861 0 2 291 0 1 657 0 1 171 1 0 53 3 4 698 0 6 270 1 0 205 chain 151302 chr8 146364022 + 51121341 51123229 L1PA5 6144 + 3 1920 24401 128 1 15 13 7 19 101 1 11 304 10 11 444 0 1 107 22 13 750 chain 32327 chr8 146364022 + 51126630 51126978 L1PA3long 6157 + 5809 6157 80307 348 chain 54835 chr8 146364022 + 51138717 51139453 MER4E1 777 + 0 770 55813 24 0 1 158 19 49 312 5 7 12 1 3 105 5 4 95 chain 9240 chr8 146364022 + 51150587 51150716 L1PREC2 3366 + 2604 2736 164355 112 4 7 13 chain 42870 chr8 146364022 + 51208748 51209337 L1PA8 5853 + 5269 5853 65570 294 1 0 45 2 0 29 0 1 27 0 1 12 2 1 9 11 9 43 2 1 19 3 2 84 0 1 6 chain 6681 chr8 146364022 + 51225493 51225583 L1M3 994 + 278 367 179824 17 2 1 71 chain 102734 chr8 146364022 + 51262296 51263649 LTR12C 1709 + 0 1696 36071 262 0 1 34 0 2 115 9 10 40 10 7 55 1 0 124 0 119 68 1 0 275 2 1 5 2 0 97 20 13 74 2 4 86 0 233 71 chain 51372 chr8 146364022 + 51265380 51265975 L1PA5 6144 + 5549 6144 58048 595 chain 31647 chr8 146364022 + 51294075 51294803 MLT2A1 477 - 0 477 81410 43 257 15 6 3 0 11 1 0 17 4 0 67 9 10 14 1 0 112 2 0 12 4 1 80 0 4 85 chain 4822 chr8 146364022 + 51302002 51302055 L1PA5 6144 - 163 216 197104 53 chain 78135 chr8 146364022 + 51303431 51304372 L1P1 4361 - 20 959 44445 12 2 1 23 1 0 157 8 7 637 0 1 101 chain 4247 chr8 146364022 + 51335024 51335341 LTR8A 794 - 24 403 203904 13 13 26 11 5 1 15 208 262 7 1 0 44 chain 71423 chr8 146364022 + 51346451 51347270 L1PA5 6144 - 0 820 47734 596 0 1 223 chain 6337 chr8 146364022 + 51359487 51359590 MER44A 345 - 115 225 182495 26 14 18 23 0 3 40 chain 59206 chr8 146364022 + 51382870 51383725 LTR12 884 - 0 884 53280 260 103 0 160 0 1 86 9 7 128 0 133 109 chain 96362 chr8 146364022 + 51386684 51387782 L1PA4 6152 + 5039 6136 37712 262 2 1 834 chain 145179 chr8 146364022 + 51398024 51399615 L1PA3long 6157 - 793 2405 25294 579 0 22 443 1 0 568 chain 68163 chr8 146364022 + 51399615 51400395 L1PA3long 6157 + 5364 6146 49108 475 0 1 162 6 7 137 chain 148998 chr8 146364022 + 51401343 51403158 L1PA7 6471 - 5 1832 24751 413 4 6 341 1 2 236 4 9 258 1 0 384 0 4 99 0 1 74 chain 53065 chr8 146364022 + 51404289 51404978 L1PA7 6471 - 9 678 56977 63 9 1 83 2 1 9 7 0 463 4 0 49 chain 17262 chr8 146364022 + 51404989 51405211 L1PA7 6471 - 688 913 134888 161 5 8 56 chain 7664 chr8 146364022 + 51405211 51405298 L1PA7 6471 - 917 1004 173142 87 chain 17556 chr8 146364022 + 51405305 51405509 L1PA7 6471 - 1012 1216 134112 204 chain 15925 chr8 146364022 + 51405509 51405686 L1PA7 6471 + 5094 5271 138039 177 chain 529390 chr8 146364022 + 51420488 51426620 L1PA4 6152 - 9 6149 4257 276 3 1 331 5 6 789 0 5 643 0 2 1420 0 1 2235 0 1 430 chain 2364 chr8 146364022 + 51427800 51427893 Tigger1 2417 - 98 190 234677 17 39 35 16 3 6 18 chain 475606 chr8 146364022 + 51427906 51433978 L1PA7 6471 + 362 6460 7867 50 25 6 493 2 10 230 0 1 132 1 2 12 6 7 80 20 20 149 2 1 33 0 3 781 28 30 22 0 3 165 0 1 47 15 0 885 1 0 24 17 21 79 4 3 183 0 1 432 0 1 208 2 1 8 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245 0 1 38 1 0 340 1 2 843 chain 28722 chr8 146364022 + 52061005 52061306 AluYa5 310 - 9 310 90235 301 chain 154642 chr8 146364022 + 52062688 52064484 L1PA5 6144 - 298 2057 24028 276 0 2 173 0 3 87 0 1 37 0 1 514 44 0 665 chain 22370 chr8 146364022 + 52064484 52064767 L1PA5 6144 + 5854 6144 118626 136 4 11 143 chain 155307 chr8 146364022 + 52070966 52072753 SVA_D 2077 + 0 2070 23945 13 5 0 12 5 0 526 0 40 97 0 40 179 0 136 61 0 78 400 0 1 347 6 0 44 0 4 92 chain 2943 chr8 146364022 + 52089694 52089731 L1PB4 2604 + 2507 2544 226250 37 chain 51845 chr8 146364022 + 52091152 52091739 LTR14C 587 - 0 587 57724 587 chain 14374 chr8 146364022 + 52129180 52129427 Tigger3 1187 + 687 1037 143290 12 0 99 46 4 8 52 29 30 44 1 0 59 chain 24903 chr8 146364022 + 52132401 52132693 L1PA5 6144 + 5852 6144 105324 292 chain 96095 chr8 146364022 + 52143321 52144659 LTR12C 1709 + 296 1709 37796 42 0 43 83 10 13 62 9 8 62 0 1 96 41 0 112 9 49 91 0 41 113 1 0 102 21 14 54 6 5 271 1 0 60 8 7 84 chain 2093 chr8 146364022 + 52143698 52143726 LTR12C 1709 + 837 865 124667 28 chain 21432 chr8 146364022 + 52144659 52144928 AluY 311 + 30 297 122396 103 3 0 79 0 1 84 chain 63975 chr8 146364022 + 52161929 52162769 L1PA8 5853 + 5030 5853 51020 80 0 1 205 15 0 14 0 1 235 1 0 42 2 0 66 6 5 8 0 6 7 5 0 40 2 1 112 chain 24616 chr8 146364022 + 52167095 52167479 MSTA 426 + 0 414 106907 63 8 10 121 4 17 9 0 22 8 28 7 69 0 14 74 chain 42173 chr8 146364022 + 52180070 52180613 MLT2A2 560 - 0 560 66433 107 5 6 34 0 11 71 0 1 309 0 4 17 chain 72670 chr8 146364022 + 52180613 52181562 HERVL-int 5654 - 0 954 47183 169 2 1 54 3 6 206 2 1 142 8 10 21 0 1 227 0 1 115 chain 5531 chr8 146364022 + 52184311 52184379 LTR12C 1709 + 1018 1086 189745 68 chain 3085 chr8 146364022 + 52184455 52184490 LTR12C 1709 + 683 718 223189 35 chain 18034 chr8 146364022 + 52200084 52200370 L1PB2 3958 - 121 403 132771 62 2 1 21 2 0 71 2 1 19 16 17 27 1 0 63 chain 8668 chr8 146364022 + 52201198 52201314 THE1C-int 1605 - 18 148 167380 29 6 20 81 chain 33543 chr8 146364022 + 52201314 52202091 LTR12F 595 - 0 595 78329 207 8 7 111 288 142 19 44 9 100 chain 72990 chr8 146364022 + 52202227 52203206 MER11A 1151 - 0 1150 47030 183 0 1 24 0 2 5 2 0 77 16 50 121 1 6 223 0 41 33 1 0 85 10 6 60 0 4 52 8 0 24 0 99 54 chain 446928 chr8 146364022 + 52205596 52211462 HERV9-int 5642 - 0 5525 8850 17 8 2 20 44 20 57 2 1 26 2 0 38 13 11 220 1 0 1263 0 1 1349 1 2 297 2 1 454 0 1 103 0 1 4 1 0 620 14 20 7 0 2 201 5 4 14 309 0 40 2 0 130 6 0 139 0 2 413 0 1 44 chain 40867 chr8 146364022 + 52211587 52212138 LTR12F 595 - 11 595 68070 192 1 0 149 0 66 33 3 1 37 36 6 100 chain 6890 chr8 146364022 + 52217752 52217830 L1P1 4361 - 2397 2475 178277 78 chain 278640 chr8 146364022 + 52243535 52247301 L1PBa1 4058 + 11 3786 14711 26 16 12 6 1 0 252 5 0 126 15 12 121 1 0 25 19 11 18 7 11 156 7 0 50 1 2 127 4 15 178 54 55 230 12 13 132 14 7 56 1 0 10 1 0 644 0 4 128 0 1 13 6 0 7 1 8 216 15 46 706 1 0 101 15 13 116 1 0 7 1 0 29 7 6 41 2 0 38 chain 10623 chr8 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26 2 1 444 0 1 244 chain 1861 chr8 146364022 + 52446925 52446951 SVA_F 1814 + 1006 1032 137616 26 chain 23318 chr8 146364022 + 52446951 52447300 SVA_F 1814 + 672 1116 114109 33 2 122 28 1 0 32 0 1 13 46 0 43 0 18 48 3 5 66 0 1 34 chain 90614 chr8 146364022 + 52447318 52448271 SVA_E 1901 + 923 1879 39424 158 0 3 795 chain 9834 chr8 146364022 + 52492467 52492575 L1PA4 6152 + 6043 6151 161427 108 chain 50252 chr8 146364022 + 52516670 52517220 L1PA4 6152 + 5602 6152 58827 550 chain 7144 chr8 146364022 + 52529168 52529289 MER2B 336 - 93 204 176449 20 19 8 35 0 1 47 chain 5596 chr8 146364022 + 52529407 52529476 MER2 342 - 127 198 189120 34 0 2 35 chain 474004 chr8 146364022 + 52549398 52554926 L1PA3long 6157 + 631 6157 7914 76 5 12 308 8 0 19 1 0 142 62 62 642 0 1 1295 7 6 1836 0 1 233 1 0 818 1 0 69 0 1 5 chain 41170 chr8 146364022 + 52554965 52555449 L1P1 4361 + 3846 4328 67681 305 1 0 154 1 0 23 chain 28611 chr8 146364022 + 52590982 52591299 L1PA3long 6157 + 5702 6012 90694 301 7 0 9 chain 11804 chr8 146364022 + 52591299 52591429 L1PA3long 6157 + 6019 6149 153020 130 chain 2643 chr8 146364022 + 52595343 52595486 MER5A 189 - 0 145 231116 13 25 27 12 5 6 18 50 49 20 chain 116314 chr8 146364022 + 52602732 52604055 L1PA3long 6157 - 0 1325 32339 223 5 6 623 1 2 69 0 1 4 1 0 397 chain 5888 chr8 146364022 + 52623032 52623281 L1MA8 2339 - 106 325 186290 23 20 14 33 15 16 18 109 84 31 chain 64996 chr8 146364022 + 52631478 52632215 SVA_C 1631 + 878 1627 50577 126 0 1 131 1 14 461 2 0 16 chain 11457 chr8 146364022 + 52634079 52634203 L1PA4 6152 + 6027 6151 154477 124 chain 29794 chr8 146364022 + 52648095 52648405 AluYa5 310 - 0 310 85459 310 chain 11179 chr8 146364022 + 52648855 52649158 LTR56 451 + 13 330 155520 52 1 0 15 123 134 22 0 1 52 9 12 29 chain 54154 chr8 146364022 + 52664450 52665105 PABL_A 660 - 0 660 56260 592 0 5 63 chain 60590 chr8 146364022 + 52674665 52675406 MER4E 760 + 0 753 52525 9 1 0 15 1 0 69 0 17 253 1 0 71 1 0 295 1 0 24 chain 19450 chr8 146364022 + 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1 2 11 16 20 14 29 0 65 3 2 77 2 0 16 2 1 19 4 0 9 8 3 10 13 9 15 1 0 13 chain 18825 chr8 146364022 + 53301328 53301531 L1PA3long 6157 + 5950 6153 130594 203 chain 3562 chr8 146364022 + 53344595 53344665 MER33 330 + 81 147 214282 33 16 12 21 chain 4895 chr8 146364022 + 53355410 53355538 MER53 195 + 39 180 196316 31 55 68 42 chain 6756 chr8 146364022 + 53381632 53381748 L1MC1 2226 - 450 581 179276 30 0 20 8 16 11 62 chain 3852 chr8 146364022 + 53382980 53383021 MSTB2 466 + 74 115 209619 41 chain 3627 chr8 146364022 + 53414387 53414492 LTR43B 570 - 185 289 213212 26 49 48 30 chain 4017 chr8 146364022 + 53414980 53415044 MLT1B 390 + 25 89 207117 19 0 7 9 7 0 29 chain 539830 chr8 146364022 + 53419041 53425178 L1PA5 6144 + 0 6139 2842 480 0 1 242 0 1 2591 0 1 177 10 9 1381 0 1 286 1 0 969 chain 234395 chr8 146364022 + 53440454 53443330 HERVL-int 5654 + 2637 5654 17068 82 4 0 193 0 1 197 0 132 564 9 12 144 0 1 224 3 4 310 0 1 309 1 2 89 0 3 42 1 2 485 0 1 219 chain 33128 chr8 146364022 + 53443330 53443857 MLT2A1 477 + 0 477 79017 140 0 1 28 1 5 36 4 2 170 0 2 24 14 0 12 60 16 22 1 0 6 0 4 9 chain 39456 chr8 146364022 + 53457681 53458343 MER4A1_ 611 + 0 611 70080 44 0 1 48 1 2 27 0 2 86 3 0 21 0 2 26 30 36 87 94 34 195 chain 28991 chr8 146364022 + 53468925 53469234 AluYg6 310 + 0 308 89031 131 1 0 177 chain 1063 chr8 146364022 + 53480736 53480927 MLT2A1 477 - 82 271 120426 70 18 17 29 1 0 73 chain 3735 chr8 146364022 + 53480936 53480977 MLT2A1 477 - 436 477 211393 41 chain 217753 chr8 146364022 + 53480978 53483681 HERVL-int 5654 - 2981 5654 18017 327 6 0 257 0 9 167 50 0 147 1 0 533 1 0 4 0 1 109 1 0 248 0 5 78 0 1 161 4 16 17 4 5 588 chain 3385 chr8 146364022 + 53481736 53481774 HERVL-int 5654 - 3743 3781 217379 38 chain 1052 chr8 146364022 + 53484491 53484680 MLT2A1 477 - 273 467 120426 31 1 5 26 1 2 130 chain 163225 chr8 146364022 + 53484696 53487110 SVA_A 1864 - 2 1846 22920 446 1 0 273 1 0 34 79 0 123 73 0 100 1 0 242 416 0 432 0 1 193 chain 6553 chr8 146364022 + 53485451 53485529 SVA_A 1864 - 1237 1315 86038 78 chain 5098 chr8 146364022 + 53485653 53485726 SVA_A 1864 - 952 1025 56487 21 17 19 32 2 0 1 chain 3073 chr8 146364022 + 53486069 53486113 SVA_A 1864 - 1373 1419 56487 28 0 2 16 chain 10529 chr8 146364022 + 53486113 53486267 SVA_A 1864 - 967 1077 84547 11 1 0 52 43 0 47 chain 1324 chr8 146364022 + 53486179 53486220 SVA_A 1864 - 1292 1333 137533 41 chain 905 chr8 146364022 + 53486313 53486363 SVA_A 1864 - 532 582 174299 50 chain 10340 chr8 146364022 + 53486365 53486485 SVA_A 1864 - 729 849 138792 120 chain 24078 chr8 146364022 + 53491236 53491522 AluSc 308 + 11 297 109881 286 chain 15679 chr8 146364022 + 53492427 53492590 AluYb8 318 - 7 170 139337 163 chain 42000 chr8 146364022 + 53519900 53520442 LTR19B 566 - 0 566 66622 30 1 2 5 1 0 16 6 7 51 0 22 22 1 2 409 chain 43172 chr8 146364022 + 53545238 53545843 MER4A1_ 611 + 0 611 65209 50 1 3 51 1 0 17 0 20 64 8 0 89 17 0 86 1 0 39 0 8 81 0 3 100 chain 8355 chr8 146364022 + 53566287 53566415 Tigger4a 237 - 71 198 169100 26 18 17 84 chain 9250 chr8 146364022 + 53594848 53594969 THE1A 353 + 228 347 164309 50 1 0 38 1 0 31 chain 72449 chr8 146364022 + 53600472 53601495 MER11A 1151 + 0 1151 47286 55 0 99 76 0 4 60 4 0 81 1 0 68 0 1 94 0 7 127 3 0 12 20 21 109 15 48 22 15 0 33 2 4 190 7 11 29 chain 21177 chr8 146364022 + 53621514 53621774 AluSp 311 + 29 289 123285 260 chain 19378 chr8 146364022 + 53651267 53651497 AluSp 311 - 35 303 129004 188 3 41 39 chain 6469 chr8 146364022 + 53684034 53684115 MER4B 649 - 77 158 181484 81 chain 513822 chr8 146364022 + 53759276 53765658 L1PA7 6471 - 2 6466 5799 840 11 9 70 8 12 40 2 1 499 7 8 121 0 7 311 0 24 13 0 1 236 1 3 265 0 3 576 0 1 129 7 8 188 0 4 464 2 3 320 32 33 140 0 3 288 1 2 106 7 0 6 0 2 6 1 6 218 0 1 749 20 32 39 2 3 116 2 3 94 0 1 29 0 2 22 0 2 87 4 5 68 0 10 235 chain 4044 chr8 146364022 + 53774195 53774278 MER101-int 1169 + 916 989 206753 36 23 13 24 chain 90579 chr8 146364022 + 53774991 53776171 L1PA15 4387 - 3126 4319 39441 90 1 0 64 0 4 15 0 2 141 0 1 242 1 0 81 1 0 152 1 0 82 0 5 56 0 6 68 2 0 78 0 1 105 chain 30328 chr8 146364022 + 53781052 53781505 MER4A1 472 - 10 464 83847 187 55 56 191 1 0 6 1 2 12 chain 8859 chr8 146364022 + 53786528 53786651 LTR39 781 - 608 730 166324 98 1 0 5 2 1 9 0 1 8 chain 7784 chr8 146364022 + 53797676 53797767 LTR26 622 - 516 607 172392 91 chain 19506 chr8 146364022 + 53804249 53804594 MLT1B 390 + 21 386 128641 29 1 2 24 7 41 10 19 0 58 5 13 70 11 12 45 5 0 61 chain 4384 chr8 146364022 + 53842441 53842631 L1ME1 1623 - 997 1184 202146 19 1 0 4 97 97 15 6 5 19 1 0 28 chain 7207 chr8 146364022 + 53860026 53860122 L1PB3 3668 - 589 682 176019 76 3 0 17 chain 24460 chr8 146364022 + 53863202 53863487 AluSq10 312 + 11 296 107757 285 chain 144775 chr8 146364022 + 53864270 53865982 LTR12C 1709 - 0 1707 25356 427 1 0 54 0 4 107 2 0 6 1 0 274 1 0 729 8 4 102 chain 399136 chr8 146364022 + 53867781 53872624 HERV9-int 5642 + 0 4824 10133 423 4 5 367 1 0 310 5 6 14 9 4 115 1 0 335 19 17 296 7 6 305 7 1 290 1 0 413 7 8 442 0 3 879 9 0 440 0 1 144 chain 3062 chr8 146364022 + 53874397 53874434 LTR12C 1709 + 932 969 223783 37 chain 27482 chr8 146364022 + 53881636 53882029 LTR12C 1709 - 9 506 76536 45 0 131 30 1 0 7 54 24 22 0 1 158 1 0 54 0 4 21 chain 45875 chr8 146364022 + 53882029 53882708 LTR12C 1709 - 872 1446 62148 54 50 0 70 41 0 235 14 5 45 5 0 165 chain 3496 chr8 146364022 + 53882083 53882133 LTR12C 1709 - 560 607 76536 31 3 1 5 1 0 10 chain 22530 chr8 146364022 + 53882708 53882970 LTR12C 1709 - 1447 1709 117898 262 chain 4768 chr8 146364022 + 53884527 53884589 MER34A 573 - 32 94 197724 62 chain 37488 chr8 146364022 + 53892422 53892911 MER9a3 513 - 0 513 72827 79 0 1 96 5 26 53 1 0 78 0 1 162 1 3 14 chain 217618 chr8 146364022 + 53892911 53895564 HERVK9-int 4720 - 0 4586 18027 94 0 794 426 0 11 16 4 0 441 0 3 622 0 1120 34 2 1 748 13 24 212 17 16 24 chain 35053 chr8 146364022 + 53896137 53896628 MER9a3 513 - 0 513 76113 57 4 0 20 0 3 96 8 29 52 1 0 78 0 1 75 9 0 7 0 9 66 0 2 18 chain 33730 chr8 146364022 + 53904288 53904723 LOR1b 457 + 0 450 78042 26 0 3 8 0 11 50 0 1 32 1 0 208 0 1 110 chain 20794 chr8 146364022 + 53909278 53909573 L1PA8 5853 - 0 289 124628 93 1 0 19 2 1 39 9 8 14 1 0 70 2 0 45 chain 11705 chr8 146364022 + 53917066 53917202 L1PA4 6152 + 6007 6143 153442 136 chain 10388 chr8 146364022 + 53920911 53921033 L1PA8 5853 + 5733 5853 158747 9 1 0 18 1 0 93 chain 18227 chr8 146364022 + 53924726 53925052 L1MA5A 2387 - 157 475 132264 15 3 0 32 2 1 27 2 0 36 12 11 18 21 21 36 5 3 90 1 2 26 chain 3463 chr8 146364022 + 53932311 53932353 L1MB5 1630 - 186 228 215932 42 chain 193837 chr8 146364022 + 53932534 53935144 L1PA10 4194 + 322 2963 19698 7 0 1 6 2 0 20 1 0 6 2 1 11 3 1 5 9 0 15 10 0 8 1 0 82 2 0 360 0 1 764 0 15 99 0 1 27 30 16 49 14 11 53 0 4 166 0 1 348 0 4 178 7 54 30 5 9 126 2 0 162 chain 4606 chr8 146364022 + 53942028 53942098 MADE1 96 - 0 91 199548 24 7 28 39 chain 522953 chr8 146364022 + 53955728 53961844 L1PA5 6144 - 2 6144 4868 7 4 0 1475 8 7 392 1 2 35 1 2 546 1 0 137 0 1 67 0 1 31 0 1 178 0 2 131 0 5 158 0 1 201 0 2 436 13 11 188 0 13 790 17 18 100 0 2 161 1 0 173 0 2 515 0 1 37 1 0 4 0 1 106 0 1 201 chain 18072 chr8 146364022 + 53970032 53970238 L1PA7 6471 - 5 211 132670 206 chain 147638 chr8 146364022 + 53970238 53972087 L1PA7 6471 + 4417 6468 24933 157 1 0 5 0 1 7 0 1 75 0 12 187 1 8 282 1 2 467 1 0 173 0 185 69 0 1 310 3 0 5 0 3 94 4 0 7 chain 35610 chr8 146364022 + 53972128 53972545 L1PA7 6471 + 5794 6212 75401 44 0 1 373 chain 52261 chr8 146364022 + 53974575 53975229 LTR12_ 688 + 15 681 57455 215 0 1 83 2 1 163 0 4 155 0 8 36 chain 56123 chr8 146364022 + 53977463 53978076 L1PA3long 6157 + 5543 6156 55056 613 chain 52483 chr8 146364022 + 53980513 53981385 L1PA11 4918 - 290 1141 57310 17 47 33 11 2 0 13 1 0 15 31 22 9 4 0 11 12 11 14 2 0 64 2 1 12 3 2 58 0 4 6 8 7 36 0 11 226 5 0 87 9 10 40 0 1 4 0 3 123 chain 5221 chr8 146364022 + 53983478 53983550 LTR12C 1709 - 641 832 192821 40 0 119 32 chain 362420 chr8 146364022 + 53984688 53989174 HERV9-int 5642 - 1215 5641 11307 293 1 2 19 1 18 31 0 1 704 0 3 254 0 1 313 6 8 1218 2 0 455 4 0 59 86 6 247 1 0 403 0 1 129 12 13 248 chain 3740 chr8 146364022 + 53989837 53989879 LTR12C 1709 - 991 1033 211331 42 chain 36830 chr8 146364022 + 53993033 53993433 L1PA3long 6157 - 0 400 73764 400 chain 90281 chr8 146364022 + 53993433 53994431 L1PA3long 6157 + 4777 5774 39543 442 1 0 555 chain 26251 chr8 146364022 + 53995515 53995859 THE1B 368 + 0 346 99016 15 2 0 22 0 5 130 2 1 173 chain 4517 chr8 146364022 + 53997831 53997885 Charlie1a 1436 + 1066 1120 200601 54 chain 527282 chr8 146364022 + 54019042 54025499 L1PA7 6471 - 1 6459 4469 93 8 0 8 0 8 515 0 1 224 1 0 1100 0 2 511 1 0 470 5 4 430 0 4 464 1 2 101 4 3 592 0 1 191 0 3 232 0 1 304 0 1 92 5 3 495 0 1 75 1 0 127 9 0 124 0 2 274 chain 22260 chr8 146364022 + 54029680 54029924 L1PA2 6032 - 3 247 119070 244 chain 13216 chr8 146364022 + 54039355 54039649 L1PB 1623 - 48 308 147403 19 55 32 9 1 0 13 27 19 29 6 4 135 chain 56816 chr8 146364022 + 54042618 54043660 L1PB3 3668 - 54 1074 54645 15 7 4 15 1 0 11 7 3 37 3 1 24 5 4 10 45 29 66 13 12 36 30 23 34 1 0 18 1 0 52 1 0 4 5 6 73 5 9 52 0 7 66 5 0 16 35 43 83 0 1 19 1 0 47 4 5 40 0 1 84 6 5 65 chain 6544 chr8 146364022 + 54048944 54049395 LTR12 884 - 201 769 180895 32 167 273 35 158 7 23 1 0 8 3 166 24 chain 409829 chr8 146364022 + 54050560 54055588 HERV9-int 5642 - 617 5631 9807 39 1 2 475 5 0 188 2 0 6 0 2 28 7 14 164 1 2 8 1 4 989 0 1 214 0 1 245 0 1 711 7 6 64 0 22 18 0 3 202 0 1 504 48 33 227 5 3 132 6 0 107 2 0 8 1 3 306 1 2 72 27 0 207 chain 7700 chr8 146364022 + 54055868 54056125 LTR12 884 - 506 637 172938 40 0 1 24 136 20 22 11 0 24 chain 23924 chr8 146364022 + 54113391 54113768 L1P2 5180 - 4164 4535 110784 218 65 59 94 chain 58585 chr8 146364022 + 54124623 54125410 L1PREC2 3366 - 2375 3157 53651 41 0 1 102 0 1 360 0 1 14 2 1 68 2 0 97 17 16 31 1 0 4 1 0 7 1 0 15 1 0 23 chain 3165 chr8 146364022 + 54146403 54146444 MER5B 177 + 136 177 221644 41 chain 45338 chr8 146364022 + 54168994 54169493 L1PA4 6152 - 1 501 62670 311 0 1 188 chain 23993 chr8 146364022 + 54191243 54191539 L1PA5 6144 - 2 295 110364 7 4 0 87 0 1 198 chain 40260 chr8 146364022 + 54191539 54192007 L1PA5 6144 + 5343 5838 68928 11 1 5 60 0 22 78 0 1 318 chain 23759 chr8 146364022 + 54200446 54200734 AluSp 311 + 11 297 111711 115 2 0 171 chain 8433 chr8 146364022 + 54202234 54202349 L1PA16 3655 + 3483 3595 168664 95 3 0 17 chain 28975 chr8 146364022 + 54204896 54205204 AluYg6 310 + 0 308 89117 308 chain 32811 chr8 146364022 + 54208794 54209235 LTR2 463 - 0 463 79513 148 0 14 140 5 7 24 0 3 6 3 8 7 5 0 48 0 3 55 chain 41665 chr8 146364022 + 54230727 54231337 LTR9B 643 + 0 622 67075 136 0 1 66 7 6 56 0 1 41 0 1 42 0 4 68 43 48 22 0 1 4 2 0 3 7 0 10 0 10 83 1 0 19 chain 35343 chr8 146364022 + 54239274 54239755 MER9a3 513 + 0 513 75747 18 0 2 90 0 1 68 12 13 66 1 0 16 4 31 114 0 1 13 0 1 79 chain 553228 chr8 146364022 + 54250226 54256370 L1PA3long 6157 + 11 6157 1043 3158 0 1 217 0 1 127 0 1 49 1 4 6 3 0 1809 1 0 773 chain 244407 chr8 146364022 + 54256983 54260416 MER61-int 3695 + 256 3695 16538 13 14 5 136 1 2 125 5 0 6 4 8 91 2 0 108 1 0 98 7 5 207 4 7 65 0 5 89 0 3 4 0 1 65 28 2 143 1 0 81 0 1 15 2 0 284 0 1 277 0 3 77 0 3 25 12 15 42 0 1 4 2 1 145 1 2 10 1 0 67 10 22 95 12 24 124 1 0 90 14 13 245 1 0 30 18 17 95 0 4 91 3 6 61 2 1 15 4 5 169 4 3 35 0 6 8 13 7 31 chain 22907 chr8 146364022 + 54279733 54280040 LTR2 463 - 32 341 116077 55 16 17 90 0 1 146 chain 33878 chr8 146364022 + 54280314 54281533 Harlequin-int 5206 - 1186 2441 14974 124 74 111 17 0 1 77 1 2 6 5 0 142 0 3 56 1 0 716 chain 534660 chr8 146364022 + 54281570 54287698 L1PA4 6152 + 0 6141 3632 213 1 2 260 3 7 462 0 7 89 1 0 408 0 1 2600 1 0 188 0 1 427 1 0 428 0 1 351 0 1 695 chain 68368 chr8 146364022 + 54287713 54290173 Harlequin-int 5206 - 2618 5081 14974 96 8 1 4 1 0 928 0 1 126 0 20 119 2 1 64 0 1 52 0 1 167 9 8 58 15 14 114 0 1 12 5 6 245 0 2 64 10 2 31 0 2 73 4 0 231 1 0 9 2 0 10 chain 9526 chr8 146364022 + 54331467 54331580 THE1B 368 + 255 368 162951 113 chain 45552 chr8 146364022 + 54331727 54332300 MER4A1_ 611 - 7 611 62454 348 1 0 126 5 37 93 chain 13521 chr8 146364022 + 54332313 54333789 LTR75_1 542 - 304 541 146280 55 36 38 51 1241 0 93 chain 60303 chr8 146364022 + 54349245 54350001 LTR12 884 - 0 884 52680 473 3 1 31 3 1 35 0 132 211 chain 295093 chr8 146364022 + 54351188 54354940 HERV9-int 5642 - 818 5642 13696 11 0 1 65 0 1 98 0 4 122 0 9 118 0 205 238 7 942 1370 0 1 532 3 0 21 81 1 287 4 3 185 20 13 165 7 9 62 8 9 177 0 3 4 0 1 167 chain 63276 chr8 146364022 + 54354968 54355781 LTR12 884 - 0 884 51333 119 0 8 48 1 0 309 0 22 40 14 56 282 chain 67190 chr8 146364022 + 54358612 54359389 L1PA5 6144 + 5366 6144 49569 630 0 1 147 chain 14345 chr8 146364022 + 54366738 54366931 L1PA8A 6298 + 6098 6290 143400 83 5 4 105 chain 55053 chr8 146364022 + 54368972 54369670 L1P3 4156 - 326 1044 55670 277 3 7 46 0 1 195 6 21 171 chain 61400 chr8 146364022 + 54369683 54370470 L1PA7 6471 + 5684 6470 52151 16 6 3 175 2 0 94 0 1 280 0 1 67 7 6 33 0 8 7 8 0 79 1 4 12 chain 56321 chr8 146364022 + 54371902 54372616 LTR12 884 + 0 884 54954 55 0 173 149 2 0 332 1 0 175 chain 469992 chr8 146364022 + 54372644 54378406 HERV9-int 5642 + 0 5642 8036 653 1 0 142 2 0 37 0 1 220 80 0 54 3 0 169 0 2 956 0 1 244 5 7 71 17 12 250 0 1 68 0 1 76 0 1 314 0 1 876 0 2 915 0 1 153 2 1 218 15 14 38 2 0 26 1 0 60 1 0 13 35 5 19 12 6 14 chain 61725 chr8 146364022 + 54381006 54381759 LTR12 884 + 0 884 52023 91 0 132 154 2 0 162 0 1 344 chain 3471 chr8 146364022 + 54381872 54381913 MER21B 843 + 629 670 215802 41 chain 24859 chr8 146364022 + 54390873 54391147 L1PA4 6152 - 14 289 105574 66 0 1 208 chain 149443 chr8 146364022 + 54474765 54477028 L1PREC2 3366 + 139 2394 24695 31 1 0 10 2 0 20 7 2 7 1 0 24 1 0 14 13 10 32 26 25 91 1 0 46 0 1 5 2 11 208 2 6 36 55 56 71 0 2 24 6 7 18 0 1 4 1 0 51 29 28 24 4 7 191 0 5 7 1 0 21 0 3 44 0 1 13 6 0 12 11 10 256 2 1 184 5 6 7 1 0 64 0 1 4 1 0 380 12 0 166 1 0 7 chain 41215 chr8 146364022 + 54481451 54482153 L1PREC2 3366 - 303 971 67632 15 2 0 38 6 4 35 39 22 27 2 0 15 0 2 16 33 25 10 3 0 4 1 0 44 1 0 23 6 4 27 2 0 35 1 0 42 0 3 97 1 3 177 chain 29437 chr8 146364022 + 54482596 54482993 MSTA-int 1630 + 2 411 86918 11 1 0 127 8 9 80 0 12 170 chain 8222 chr8 146364022 + 54484550 54484653 MSTA 426 + 2 104 169824 89 1 0 13 chain 530155 chr8 146364022 + 54522203 54528081 L1PA3long 6157 + 136 6152 4173 16 0 1 11 6 7 570 1 0 35 0 128 164 0 2 381 1 0 2497 0 7 1278 0 1 918 chain 26530 chr8 146364022 + 54528315 54528732 MER61F 604 + 0 447 97934 48 4 5 22 9 44 21 23 11 115 0 1 31 15 21 30 1 0 98 chain 36984 chr8 146364022 + 54529631 54530139 MER9a3 513 + 0 513 73528 18 0 2 91 0 1 67 12 13 64 1 0 119 1 3 56 4 5 43 1 0 31 chain 392997 chr8 146364022 + 54531465 54536146 HERVK9-int 4720 + 36 4718 10359 13 12 8 67 1 0 7 2 1 30 1 0 120 4 1 1327 12 11 366 0 13 240 0 1 1009 0 6 40 5 4 7 2 0 71 4 0 1177 1 0 163 chain 38195 chr8 146364022 + 54536148 54536645 MER9a3 513 + 0 513 71842 18 0 2 12 0 12 40 4 3 24 0 1 43 10 11 11 0 1 80 1 0 176 0 1 78 chain 381761 chr8 146364022 + 54549236 54554514 L1PA8 5853 - 16 5248 10709 76 2 1 19 2 1 36 25 16 9 2 1 70 2 0 44 1 0 49 2 1 28 1 3 388 0 1 8 0 2 72 17 6 26 0 1 393 2 0 319 0 9 159 0 1 131 25 26 95 0 6 173 0 5 69 0 1 6 1 0 121 65 5 245 2 3 75 0 5 199 0 4 52 1 2 105 0 1 284 0 4 567 32 8 175 0 1 155 0 1 203 0 14 184 6 10 10 4 0 92 5 1 41 5 2 300 55 63 18 0 3 16 0 3 9 chain 15895 chr8 146364022 + 54574147 54574367 MER30 238 + 0 237 138669 107 4 0 8 2 23 99 chain 20554 chr8 146364022 + 54576473 54576896 L1MA6 2487 + 1887 2288 125458 40 2 1 75 8 7 57 48 50 18 0 1 72 45 24 40 6 4 12 chain 346494 chr8 146364022 + 54592286 54596195 L1PA4 6152 + 2240 6146 11709 175 4 0 101 9 0 300 0 1 338 0 1 96 0 10 210 2 1 42 0 1 890 2 0 1740 chain 7032 chr8 146364022 + 54598072 54598172 L1MB5 1630 + 1140 1240 177239 26 1 0 45 4 5 24 chain 7964 chr8 146364022 + 54598198 54598286 L1PA5 6144 + 6056 6144 171262 88 chain 76459 chr8 146364022 + 54606756 54607635 L1PA5 6144 - 1 881 45233 48 0 1 831 chain 490670 chr8 146364022 + 54607733 54613512 L1PA3long 6157 - 10 5807 7334 821 0 1 389 0 1 320 0 1 151 0 3 767 1 0 4 0 1 172 0 1 205 0 1 1144 0 1 1445 9 16 111 12 14 228 chain 9126 chr8 146364022 + 54666402 54666523 LTR40b 463 - 15 136 164938 27 0 1 76 1 0 17 chain 28072 chr8 146364022 + 54668306 54668600 AluYa5 310 - 0 294 92751 294 chain 4358 chr8 146364022 + 54673264 54673319 MER49 923 + 39 93 202466 13 1 0 41 chain 77820 chr8 146364022 + 54678683 54679729 MER11C 1089 + 0 1063 44609 247 0 9 61 0 4 64 1 0 178 42 41 68 0 1 17 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 5377 chr8 146364022 + 54679756 54679933 L1MC2 1988 + 1816 1966 191229 16 7 3 6 3 0 6 1 0 46 7 0 10 59 47 16 chain 124909 chr8 146364022 + 54687525 54689022 LTR12C 1709 - 0 1709 29422 67 0 4 11 1 0 186 0 1 23 8 12 177 0 4 39 0 1 67 2 0 6 1 0 74 0 200 369 6 7 24 0 1 436 chain 549651 chr8 146364022 + 54693103 54699232 L1PA4 6152 - 1 6152 1500 154 0 1 746 0 1 2024 0 1 627 0 1 208 0 4 2234 1 15 135 chain 9110 chr8 146364022 + 54762724 54762841 L1PA10 4194 - 35 148 165016 9 1 0 34 3 0 70 chain 9615 chr8 146364022 + 54787001 54787123 MLT2C2 476 - 63 185 162512 122 chain 44860 chr8 146364022 + 54804454 54804942 L1PA3long 6157 - 2 490 63222 488 chain 13067 chr8 146364022 + 54804942 54805081 L1PA3long 6157 + 5536 5675 147968 139 chain 8365 chr8 146364022 + 54827278 54827379 U6 107 + 0 102 169041 48 0 1 53 chain 24411 chr8 146364022 + 54841105 54841396 AluSp 311 + 4 295 108023 291 chain 20298 chr8 146364022 + 54844506 54844744 L1P2 5180 - 3216 3454 125159 238 chain 508193 chr8 146364022 + 54844744 54851112 L1PA7 6471 + 353 6469 6305 47 5 7 84 0 2 169 2 0 224 0 7 220 0 9 91 0 4 21 0 1 256 0 3 311 0 1 174 0 1 538 0 1 92 0 1 20 1 2 77 3 0 677 0 1 81 7 11 42 0 1 308 1 0 65 9 15 39 0 2 985 0 5 312 288 0 361 1 0 428 0 1 355 8 0 54 2 0 10 chain 19880 chr8 146364022 + 54849621 54849853 L1PA5 6144 + 5904 6135 127549 82 1 0 149 chain 22950 chr8 146364022 + 54935605 54935894 AluSp 311 + 0 297 115857 144 4 10 80 2 4 59 chain 76488 chr8 146364022 + 54944240 54945208 LTR5_Hs 974 - 0 974 45216 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 58017 chr8 146364022 + 54967913 54969192 L1MA1 4479 + 3280 4184 53966 87 0 9 13 3 0 5 2 1 17 0 3 5 75 25 73 1 0 3 304 0 193 7 0 25 2 0 16 1 0 33 2 0 41 21 19 11 1 0 9 0 5 74 1 0 5 3 0 29 4 5 92 1 0 29 2 0 35 5 4 5 1 0 5 3 0 16 7 0 12 chain 29153 chr8 146364022 + 54971859 54972163 AluYb8 318 - 14 318 88300 304 chain 13793 chr8 146364022 + 54977299 54977520 MER30 238 - 0 238 145292 70 1 0 41 17 16 62 4 5 11 0 18 15 chain 4836 chr8 146364022 + 54985126 54985179 MER41B 635 + 498 551 196957 53 chain 186840 chr8 146364022 + 54986820 54989075 HERVK9-int 4720 + 1372 4720 20347 114 0 1086 108 1 4 62 0 4 39 1 0 361 4 0 155 19 22 263 2 0 23 1 2 84 0 3 229 0 2 760 2 0 27 chain 42642 chr8 146364022 + 54989075 54989573 MER9a1 513 + 0 513 65851 19 2 1 136 0 16 341 chain 121051 chr8 146364022 + 54997563 54999004 SVA_B 1603 + 0 1603 30677 29 0 24 95 0 14 350 0 8 256 0 121 30 1 0 14 2 1 33 6 1 14 1 0 19 2 0 154 0 4 21 0 2 248 3 4 155 2 0 6 chain 49662 chr8 146364022 + 55000313 55000904 LTR10C 591 - 0 591 59259 79 0 2 145 1 0 76 1 0 289 chain 80917 chr8 146364022 + 55002436 55003334 MER11D 897 + 0 897 43233 372 1 0 525 chain 5691 chr8 146364022 + 55011278 55011362 MER44B 551 - 431 519 188198 15 4 8 65 chain 2939 chr8 146364022 + 55015175 55015236 LTR12F 595 + 239 282 226348 23 19 1 19 chain 40165 chr8 146364022 + 55016398 55018353 MER41A 554 + 0 554 69087 242 1438 16 132 0 21 143 chain 29676 chr8 146364022 + 55017342 55017934 LTR12C 1709 + 650 1541 85915 168 1 0 19 1 0 16 1 0 130 204 507 4 1 0 47 chain 106470 chr8 146364022 + 55037666 55039020 SVA_F 1814 + 553 1814 35128 256 0 40 48 0 1 31 22 37 35 1 0 6 1 2 85 148 0 78 1 0 642 chain 8117 chr8 146364022 + 55038151 55038299 SVA_F 1814 + 854 903 117845 1 100 0 32 0 1 15 chain 7993 chr8 146364022 + 55038153 55038252 SVA_F 1814 + 855 969 154765 25 1 2 64 2 16 7 chain 7331 chr8 146364022 + 55054165 55054381 MER2 342 - 24 206 175215 17 39 46 25 2 3 44 52 10 37 chain 24183 chr8 146364022 + 55054711 55055015 AluSp 311 - 9 311 109308 170 2 0 132 chain 48384 chr8 146364022 + 55060904 55061641 LTR17 781 - 24 781 60192 19 20 43 165 1 0 99 7 8 96 1 0 31 0 2 39 8 7 56 49 47 89 1 0 56 chain 41676 chr8 146364022 + 55063597 55064533 MER41B 635 + 0 635 67061 16 7 8 30 0 9 62 12 13 73 0 3 81 3 4 144 1 5 66 324 0 35 6 7 39 0 3 37 chain 6692 chr8 146364022 + 55069724 55069807 L1MB2 1706 - 12 95 179741 83 chain 26766 chr8 146364022 + 55072519 55072875 THE1A 353 + 0 353 97103 110 1 0 92 1 0 75 2 1 75 chain 131571 chr8 146364022 + 55072875 55074445 THE1A-int 1579 + 0 1579 27727 221 0 2 412 2 3 4 0 1 851 0 5 80 chain 27147 chr8 146364022 + 55074445 55074801 THE1A 353 + 0 353 95767 111 1 0 91 1 0 7 12 11 133 chain 18778 chr8 146364022 + 55080363 55080695 L1PA15 4387 + 4008 4327 130746 96 1 0 26 1 0 55 1 0 14 10 6 11 11 10 31 23 20 37 3 1 12 chain 4776 chr8 146364022 + 55086605 55086675 MIR 256 - 128 192 197622 56 6 0 8 chain 24059 chr8 146364022 + 55089445 55089723 AluSp 311 + 16 295 109986 253 0 1 25 chain 7144 chr8 146364022 + 55092392 55092526 MER31A 484 + 193 327 176453 21 7 32 10 25 0 71 chain 3805 chr8 146364022 + 55098042 55098397 LTR40a 516 - 19 384 210319 34 49 50 20 231 240 21 chain 28033 chr8 146364022 + 55118271 55118625 THE1B 368 - 0 368 92879 196 7 6 107 0 15 44 chain 6194 chr8 146364022 + 55150976 55151136 MLT1C 463 + 251 427 183624 17 70 86 73 chain 3926 chr8 146364022 + 55252998 55253049 MER2 342 - 127 178 208466 51 chain 134888 chr8 146364022 + 55322166 55323642 L1PA3long 6157 + 4679 6157 27037 1329 5 7 142 chain 12817 chr8 146364022 + 55332390 55332668 MER2 342 + 25 320 148988 23 104 120 127 2 3 22 chain 19795 chr8 146364022 + 55384752 55384991 AluSp 311 + 12 289 127829 36 0 38 203 chain 24511 chr8 146364022 + 55386166 55386479 AluSp 311 - 6 311 107486 23 5 0 127 8 5 150 chain 18765 chr8 146364022 + 55393825 55394078 AluY 311 + 51 275 130784 78 29 0 146 chain 245163 chr8 146364022 + 55406422 55410591 L1PB1 5432 - 12 3412 16503 16 1 0 13 1 0 21 1 0 26 2 0 12 1 0 4 3 1 15 23 12 4 1 0 16 1 0 43 1 0 16 2 1 52 801 65 87 7 24 278 0 1 87 5 0 76 1 0 159 1 2 178 1 0 38 9 4 56 1 0 380 6 7 514 0 1 212 0 1 5 1 0 59 7 11 81 3 1 258 19 0 46 0 1 45 1 0 39 3 2 179 33 33 218 chain 53107 chr8 146364022 + 55416914 55417584 L1PA8A 6298 + 5619 6291 56958 395 0 1 152 7 16 9 8 0 99 chain 6722 chr8 146364022 + 55422194 55422265 L1PA5 6144 - 16 87 179522 71 chain 21648 chr8 146364022 + 55444061 55444423 THE1B 368 + 0 368 121578 77 4 5 87 1 0 33 1 0 12 28 30 62 5 13 22 12 9 18 chain 7560 chr8 146364022 + 55455023 55455150 MER85 139 + 0 139 173808 31 11 12 53 1 13 8 1 0 22 chain 16443 chr8 146364022 + 55490513 55490700 L1PA3long 6157 - 0 190 137089 12 0 3 175 chain 541857 chr8 146364022 + 55493575 55499702 L1PA4 6152 - 9 6151 2530 835 0 4 949 0 4 1938 0 1 409 0 4 1503 0 1 19 0 1 474 chain 22895 chr8 146364022 + 55513873 55514134 L1PA3long 6157 + 5888 6149 116132 261 chain 540048 chr8 146364022 + 55514608 55520730 L1PA4 6152 - 11 6130 2812 1938 0 1 1954 4 1 813 1 0 1412 chain 25769 chr8 146364022 + 55544405 55544701 AluSp 311 - 16 311 101011 163 1 0 132 chain 3138 chr8 146364022 + 55552184 55552339 L1ME1 1623 - 519 676 222203 16 1 0 8 3 0 16 89 95 22 chain 190017 chr8 146364022 + 55580373 55582594 L1PA6 6164 + 3477 6161 20046 390 0 464 616 6 4 158 1 0 4 3 5 197 0 1 686 0 5 7 10 4 143 chain 8974 chr8 146364022 + 55594814 55594919 L1PA8 5853 - 0 104 165748 93 1 0 11 chain 15761 chr8 146364022 + 55594920 55595113 L1PA8A 6298 + 5725 5918 138094 193 chain 193831 chr8 146364022 + 55595113 55598115 L1PA11 4918 - 414 3140 19699 16 2 1 12 2 0 44 11 89 4 0 1 205 3 0 5 23 26 277 5 3 150 7 5 342 6 11 328 13 0 190 8 9 186 3 0 5 6 9 289 0 5 28 351 0 17 1 0 166 9 13 71 0 1 181 1 2 35 chain 11000 chr8 146364022 + 55598190 55598336 MER30 238 + 65 237 156203 45 1 24 62 0 3 38 chain 173645 chr8 146364022 + 55599877 55601947 L1PA7 6471 - 6 2075 21630 518 1 0 333 5 4 614 12 13 587 chain 4347 chr8 146364022 + 55601949 55602012 LTR56 451 - 380 441 202626 6 1 0 48 1 0 7 chain 304263 chr8 146364022 + 55604378 55607796 L1PA3long 6157 - 0 3418 13229 154 0 1 5 1 0 3258 chain 118032 chr8 146364022 + 55610205 55611606 L1PA7 6471 + 5064 6468 31794 557 0 3 50 0 1 272 1 0 521 chain 5144 chr8 146364022 + 55649348 55649433 MER5A1 166 + 80 165 193619 52 10 8 5 0 2 18 chain 18684 chr8 146364022 + 55661682 55661912 AluY 311 + 74 304 130984 49 1 0 9 0 1 171 chain 40579 chr8 146364022 + 55663056 55663708 LTR12F 595 + 0 595 68471 103 0 1 1 42 0 40 2 0 16 25 0 17 16 7 16 14 23 10 0 7 46 7 10 26 0 1 271 chain 5958 chr8 146364022 + 55688554 55688746 MER2 342 + 45 258 185608 17 100 121 75 chain 12681 chr8 146364022 + 55741225 55741406 Tigger3b 1229 - 980 1165 149528 14 0 3 96 14 15 57 chain 13454 chr8 146364022 + 55742843 55743000 L1PA5 6144 - 0 157 146509 157 chain 65662 chr8 146364022 + 55787613 55788608 LTR12D 1347 + 0 1347 50265 112 2 1 82 24 32 28 0 1 9 14 16 12 12 48 52 8 29 101 14 45 17 6 5 104 0 17 118 1 2 115 3 207 57 0 33 104 chain 24748 chr8 146364022 + 55789693 55789983 AluSp 311 - 17 311 106185 120 1 0 150 0 5 19 chain 89892 chr8 146364022 + 55842443 55843678 L1PB1 5432 + 3730 5098 39686 165 0 1 96 16 6 42 0 5 7 10 5 13 5 0 364 0 1 52 2 147 171 3 1 85 12 12 92 1 3 72 0 1 27 chain 27003 chr8 146364022 + 55856370 55856681 L1PA4 6152 - 9 324 96271 27 0 4 284 chain 388094 chr8 146364022 + 55889150 55894396 L1PA7 6471 + 3 6468 10514 114 3 0 286 1 3 269 4 7 16 19 17 456 10 0 11 1 0 4 13 28 693 0 1 450 18 19 177 0 1 25 0 2 59 0 1 10 0 1 42 7 0 186 0 10 177 0 1 103 0 13 33 1 2 62 6 5 200 1 0 10 2 0 504 2 1 20 0 1 74 0 1 7 295 0 28 1 14 361 0 1477 474 2 0 9 chain 434058 chr8 146364022 + 55898560 55903722 L1PA6 6164 + 0 6162 9213 687 2 1 56 0 1011 224 0 1 267 0 1 76 25 0 5 1 0 483 0 9 362 1 2 4 0 1 34 0 1 260 1 2 304 0 1 460 1 2 693 6 4 23 5 0 86 0 1 257 0 4 82 1 0 84 0 1 361 5 6 156 1 0 4 0 1 145 chain 3708 chr8 146364022 + 55925302 55925346 MER21C 908 - 748 792 211833 44 chain 23648 chr8 146364022 + 55956903 55957178 L1PA5 6144 + 5869 6144 112318 275 chain 3016 chr8 146364022 + 55959818 55959851 MLT2B3 573 - 1 34 224715 33 chain 546493 chr8 146364022 + 55962461 55968559 L1PA3long 6157 + 6 6157 1885 250 0 47 554 4 5 584 2 1 1808 0 2 1097 0 4 1799 chain 36213 chr8 146364022 + 55970417 55970974 LTR12_ 688 + 0 688 74612 97 8 24 127 44 45 85 5 4 20 0 103 57 0 2 97 1 11 16 chain 87439 chr8 146364022 + 55986015 55987051 MER11C 1089 + 0 1054 40583 247 0 9 61 0 4 369 0 4 43 0 1 316 chain 28930 chr8 146364022 + 55987857 55988165 AluYb8 318 - 2 310 89328 308 chain 5974 chr8 146364022 + 55988173 55988242 MER6 865 + 630 699 185476 69 chain 8084 chr8 146364022 + 55992175 55992403 LTR56 451 + 6 248 170577 6 2 0 53 1 0 6 104 121 56 chain 28878 chr8 146364022 + 56009618 56009994 THE1C 375 + 0 375 89550 185 11 10 79 0 1 4 1 0 96 chain 63288 chr8 146364022 + 56040144 56040880 L1PA4 6152 - 1 723 51326 114 0 1 39 0 1 499 17 1 67 chain 22683 chr8 146364022 + 56043445 56043710 AluSp 311 + 8 273 117145 265 chain 49518 chr8 146364022 + 56118343 56119005 LTR12_ 688 - 0 688 59376 312 1 0 117 5 6 4 0 1 85 42 0 17 4 70 45 0 1 30 chain 33594 chr8 146364022 + 56156917 56157453 L1PA15 4387 - 21 539 78248 10 1 0 29 5 0 14 2 0 43 6 3 46 6 5 9 4 0 22 2 1 54 1 0 26 3 4 34 0 1 166 10 8 43 chain 11628 chr8 146364022 + 56200559 56200717 MER30 238 + 64 237 153784 32 11 26 115 chain 349102 chr8 146364022 + 56213556 56217446 L1PA4 6152 - 0 3893 11633 868 0 1 2193 1 0 223 0 2 454 0 1 151 chain 23522 chr8 146364022 + 56220845 56221184 THE1D 372 - 32 372 113007 102 8 14 76 9 13 80 9 0 55 chain 9189 chr8 146364022 + 56240635 56240798 THE1D 372 - 206 372 164612 26 0 1 50 21 22 35 1 0 13 5 7 12 chain 11100 chr8 146364022 + 56241868 56242059 MER30 238 + 37 238 155805 13 10 9 32 0 3 17 4 15 58 9 6 48 chain 6268 chr8 146364022 + 56263061 56263216 L1MB3 1562 + 1294 1417 183015 57 1 0 19 63 32 15 chain 44519 chr8 146364022 + 56332855 56333354 L1PA3long 6157 + 5656 6156 63558 183 0 1 316 chain 542779 chr8 146364022 + 56373054 56379202 L1PA4 6152 + 0 6152 2380 503 0 1 22 0 4 28 1 2 474 1 0 209 0 1 2816 10 1 759 0 1 965 0 2 346 1 0 7 0 5 6 chain 18488 chr8 146364022 + 56382821 56383175 THE1B 368 + 0 368 131537 8 2 0 98 10 11 52 67 81 59 6 7 52 chain 530214 chr8 146364022 + 56388988 56395116 L1PA4 6152 + 7 6151 4165 135 15 31 203 9 8 196 1 0 128 0 1 93 0 3 31 17 0 444 0 1 422 0 5 136 0 1 919 0 1 521 0 1 193 1 0 32 1 0 836 0 4 429 0 1 8 14 15 49 0 1 282 0 1 1013 chain 2848 chr8 146364022 + 56400332 56400366 Ricksha_c 1012 - 884 918 227876 34 chain 28940 chr8 146364022 + 56401217 56401523 AluYa5 310 + 0 307 89273 141 0 1 165 chain 9221 chr8 146364022 + 56414263 56414398 L1MB3 1562 - 338 472 164440 22 13 12 100 chain 55057 chr8 146364022 + 56419920 56420548 L1PA4 6152 - 9 640 55667 199 0 3 429 chain 47810 chr8 146364022 + 56461415 56461971 MLT2A2 560 + 0 560 60616 203 0 1 221 1 0 125 0 4 6 chain 24106 chr8 146364022 + 56463018 56463423 L1PA14 3548 + 3071 3465 109716 40 12 8 12 2 0 6 1 0 84 1 0 8 1 13 64 0 1 25 1 0 8 10 6 33 4 2 12 1 0 3 1 0 18 1 0 41 6 0 10 chain 55181 chr8 146364022 + 56478994 56479903 L1PB1 5432 + 4557 5422 55598 58 0 5 6 3 0 179 0 8 201 0 2 66 55 32 18 5 4 8 1 0 14 28 19 43 2 1 16 1 0 44 1 0 15 2 0 6 15 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 32154 chr8 146364022 + 56484044 56484523 MER1A 529 + 0 523 80603 16 20 26 38 15 55 322 3 0 5 8 9 52 chain 344676 chr8 146364022 + 56485604 56490143 L1PA6 6164 + 1795 6155 11766 153 1 5 379 6 8 145 15 0 61 1 0 83 0 1 60 7 1 360 0 1 15 1 2 106 1 3 7 2 0 12 1 0 43 14 18 289 0 1 13 0 1 134 0 1 553 315 1 1062 0 3 91 0 3 319 1 149 42 21 2 11 0 4 65 2 1 62 1 5 85 chain 29437 chr8 146364022 + 56513604 56513938 L1PA6 6164 - 2 336 86911 334 chain 13984 chr8 146364022 + 56527147 56527362 Tigger2 2703 - 168 392 144638 75 1 8 59 5 10 28 1 0 33 3 1 10 chain 471499 chr8 146364022 + 56528306 56534168 L1PA4 6152 + 10 5855 7989 117 0 14 186 0 3 136 5 6 413 0 6 65 25 0 220 23 14 21 47 46 294 2 0 197 0 1 4 9 8 164 0 1 592 9 1 412 1 0 4 0 1 102 0 1 132 1 0 549 0 3 2132 chain 9835 chr8 146364022 + 56534174 56534293 L1PA5 6144 + 6025 6144 161414 119 chain 53070 chr8 146364022 + 56551437 56552025 L1PA4 6152 + 4255 4843 56970 588 chain 117612 chr8 146364022 + 56552025 56553334 L1PA4 6152 + 4844 6152 31921 1303 1 0 5 chain 292226 chr8 146364022 + 56562724 56566040 L1PA4 6152 - 0 3321 13881 858 8 7 1596 0 3 180 0 1 225 0 2 449 chain 518461 chr8 146364022 + 56568709 56574854 L1PA6 6164 + 4 6157 5332 222 14 6 277 0 1 279 0 17 237 1 2 266 6 0 512 1 0 344 1 2 164 3 0 578 0 1 155 0 1 117 2 0 4 0 1 346 0 1 757 2 1 984 0 8 111 1 0 170 2 0 589 chain 119079 chr8 146364022 + 56575762 56577512 L1PA7 6471 - 5 1438 31378 142 5 3 39 0 1 342 325 0 224 0 3 10 0 2 83 0 3 528 0 1 52 chain 5324 chr8 146364022 + 56589806 56589883 MADE1 96 + 2 95 191782 32 1 17 44 chain 16026 chr8 146364022 + 56598895 56599209 MER1B 344 + 42 344 138290 15 5 6 12 20 28 88 10 11 29 9 0 36 31 18 59 chain 39801 chr8 146364022 + 56618641 56619104 LTR2 463 + 0 463 69626 463 chain 26088 chr8 146364022 + 56620387 56620676 L1PA2 6032 - 8 295 99674 5 2 0 282 chain 157817 chr8 146364022 + 56620690 56622422 L1PA2 6032 + 3994 5727 23620 768 0 1 964 chain 418628 chr8 146364022 + 56622755 56628146 Harlequin-int 5206 + 125 5206 9569 20 2 1 160 0 1 47 23 16 308 1 0 236 316 0 283 8 11 1485 4 3 63 1 0 530 3 4 10 2 1 16 6 6 246 2 1 6 0 1 48 0 5 389 1 4 938 4 5 215 0 4 18 chain 38799 chr8 146364022 + 56628146 56628608 LTR2 463 + 0 463 71017 455 0 1 7 chain 328784 chr8 146364022 + 56630052 56635382 L1PB1 5432 + 95 5430 12244 28 8 8 25 21 18 588 0 1 435 4 0 197 1 0 7 8 0 7 8 10 317 1 0 129 0 3 181 0 1 174 11 0 9 0 10 9 556 938 493 0 1 48 2 0 224 1 0 107 5 0 73 2 1 480 7 4 367 0 1 5 10 11 93 331 8 8 1 0 24 1 0 9 27 20 52 1 0 18 1 0 42 2 1 16 3 0 7 15 6 18 8 5 16 14 12 10 1 0 17 19 17 16 1 0 4 1 0 6 chain 30927 chr8 146364022 + 56688568 56689315 LTR2 463 - 0 463 82639 88 12 13 154 334 46 104 0 3 55 chain 5831 chr8 146364022 + 56745688 56745791 L1PA5 6144 - 1 97 186854 10 1 3 52 2 0 9 0 2 11 9 0 9 chain 11457 chr8 146364022 + 56758739 56758885 LTR8 732 - 576 732 154476 115 0 9 16 0 1 15 chain 14343 chr8 146364022 + 56803959 56804212 L1MB3 1562 + 1301 1524 143404 50 1 0 67 42 15 5 2 0 30 1 0 19 0 1 36 chain 24679 chr8 146364022 + 56808909 56809220 L1PA7 6471 + 6156 6466 106556 166 14 13 131 chain 3743 chr8 146364022 + 56849856 56849903 MADE1 96 - 0 87 211284 23 0 40 24 chain 24231 chr8 146364022 + 56948129 56948427 AluSg 306 + 0 294 109037 32 5 0 118 0 1 143 chain 6450 chr8 146364022 + 56954934 56955015 MADE1 96 + 0 96 181637 45 0 15 36 chain 19486 chr8 146364022 + 56961243 56961532 AluSp 311 + 11 306 128700 59 0 5 99 16 15 80 11 13 24 chain 4583 chr8 146364022 + 56970009 56970062 Tigger6a 1079 + 646 699 199833 53 chain 164519 chr8 146364022 + 57015884 57018214 SVA_D 2077 - 0 2075 22743 189 323 0 499 0 1 41 0 3 9 0 78 203 1 138 424 156 0 450 0 5 35 chain 24345 chr8 146364022 + 57019907 57020309 LTR7Y 441 + 0 427 108394 74 3 12 74 80 96 171 chain 24407 chr8 146364022 + 57022688 57022983 AluSp 311 - 16 311 108043 295 chain 46861 chr8 146364022 + 57051923 57052534 L1PA10 4194 - 44 647 61340 34 3 0 40 1 0 130 2 1 5 2 0 188 1 0 205 chain 3228 chr8 146364022 + 57055213 57055267 MER52A 1651 + 890 936 220467 26 8 0 20 chain 521941 chr8 146364022 + 57058719 57064848 L1PA5 6144 - 7 6144 4968 196 0 1 642 1 5 797 0 1 12 0 2 233 6 7 563 1 3 347 1 2 80 0 3 79 1 0 61 0 10 176 0 3 600 3 1 118 0 2 1024 15 6 302 24 0 712 0 14 135 chain 27443 chr8 146364022 + 57093011 57093320 L1PA7 6471 - 985 1294 94005 309 chain 78907 chr8 146364022 + 57093320 57094292 L1PA7 6471 + 5509 6469 44103 111 0 8 4 1 0 51 20 8 617 7 1 11 0 2 134 4 1 12 chain 2757 chr8 146364022 + 57168277 57168475 MLT1F2 592 + 163 415 229358 23 147 200 5 0 1 23 chain 532856 chr8 146364022 + 57172967 57179015 L1PA4 6152 - 0 6152 3868 6 0 2 141 1 0 648 0 1 694 0 1 592 0 22 362 0 1 2110 7 85 1487 chain 141319 chr8 146364022 + 57183941 57185581 SVA_D 2077 - 4 2065 25934 635 1 98 66 3 0 73 49 0 110 0 183 72 0 117 170 0 76 461 chain 2664 chr8 146364022 + 57184719 57184768 SVA_D 2077 - 700 749 116679 49 chain 215312 chr8 146364022 + 57188400 57191337 L1P3 4156 + 1504 4139 18143 153 0 1 298 0 3 672 5 7 780 0 2 273 316 0 401 13 19 26 chain 13123 chr8 146364022 + 57193716 57193911 L1PA16 3655 - 62 267 147753 16 3 0 31 13 27 105 1 0 26 chain 17631 chr8 146364022 + 57199025 57199329 L1PA17 2846 + 2388 2680 133905 111 4 0 18 40 37 38 2 0 6 3 2 32 1 0 18 1 0 30 chain 329799 chr8 146364022 + 57239810 57244615 L1PB1 5432 - 14 4824 12210 14 1 0 7 12 13 14 1 0 20 28 23 19 19 7 20 1 0 44 1 0 18 1 0 52 27 20 13 1 0 6 291 25 217 16 1 167 5 4 84 4 0 460 1 0 432 41 16 164 1 0 16 10 343 70 6 7 178 0 1 97 7 6 255 0 1 92 2 0 269 6 0 181 2 0 91 6 7 188 4 17 321 27 9 7 2 0 7 1 0 5 0 1 116 0 30 326 3 1 308 chain 418486 chr8 146364022 + 57246347 57251442 L1P2 5180 - 52 5178 9573 39 1 0 1144 1 2 421 1 0 1156 0 2 44 0 1 1363 1 26 137 1 0 6 1 0 46 17 22 115 11 15 74 1 0 8 1 0 97 7 8 153 3 2 90 48 47 108 chain 105133 chr8 146364022 + 57256375 57257556 L1PA4 6152 - 11 1197 35468 828 0 5 353 chain 88076 chr8 146364022 + 57257556 57258569 L1PA4 6152 + 3919 4936 40314 695 0 4 318 chain 526890 chr8 146364022 + 57263768 57269906 L1PA4 6152 - 9 6150 4513 251 1 0 271 0 1 307 0 5 116 0 1 115 21 0 9 0 21 7 0 6 683 4 0 410 14 18 1601 2 1 1069 9 0 187 0 2 326 2 0 249 5 6 479 chain 72715 chr8 146364022 + 57273120 57273998 MER11D 897 + 0 897 47161 283 5 0 303 8 31 160 0 1 119 chain 8949 chr8 146364022 + 57277040 57277152 THE1B 368 - 256 368 165877 112 chain 37672 chr8 146364022 + 57277545 57278010 MER4A1 472 - 0 472 72583 126 0 2 29 0 4 285 0 1 25 chain 188868 chr8 146364022 + 57278018 57281068 MER4-int 2692 - 0 2630 20160 168 0 1 245 1 5 258 29 30 6 0 1 71 7 9 43 0 1 310 2 1 145 5 9 69 15 14 57 1 2 47 0 3 19 0 1 80 310 0 49 13 16 43 6 4 266 4 7 298 1 4 129 7 3 118 172 43 18 1 0 37 chain 73048 chr8 146364022 + 57283301 57284136 L1PA4 6152 - 6 837 47005 139 8 0 15 0 1 236 0 3 437 chain 540353 chr8 146364022 + 57327782 57333803 L1PA3long 6157 + 0 6152 2761 152 0 1 623 0 128 1671 0 3 2107 0 1 283 7 0 8 0 7 400 1 0 625 1 0 143 chain 368931 chr8 146364022 + 57341669 57346003 L1P1 4361 + 6 4341 11124 1017 0 1 743 7 10 159 1 0 379 0 1 50 0 1 20 0 1 777 5 1 221 0 1 762 0 1 147 1 0 7 1 0 23 2 1 12 chain 21925 chr8 146364022 + 57351584 57351994 LTR7 482 + 0 482 120520 69 10 99 12 51 0 20 11 1 10 11 53 151 16 18 49 chain 11688 chr8 146364022 + 57393408 57393548 MER85 139 + 0 139 153527 93 1 0 46 chain 30110 chr8 146364022 + 57406455 57406787 L1PA3long 6157 - 0 332 84456 332 chain 20361 chr8 146364022 + 57406787 57407008 L1PA3long 6157 + 5604 5825 126031 221 chain 110746 chr8 146364022 + 57461602 57462885 L1PA4 6152 - 11 1295 34014 102 0 1 40 1 0 90 7 1 8 0 2 595 0 5 440 chain 176586 chr8 146364022 + 57464229 57466265 L1P1 4361 + 1962 4005 21294 829 0 1 373 2 1 160 0 1 445 4 10 223 chain 24430 chr8 146364022 + 57480114 57480482 THE1B 368 + 0 368 107915 169 1 0 29 0 3 8 22 25 6 1 0 66 17 13 49 chain 56133 chr8 146364022 + 57493570 57494312 MER4E1 777 + 0 769 55047 25 2 0 17 5 18 269 0 19 88 0 1 8 11 0 93 6 13 218 chain 53630 chr8 146364022 + 57495796 57496456 PABL_A 660 + 0 660 56600 230 1 0 34 0 1 308 0 1 13 6 5 68 chain 11184 chr8 146364022 + 57509346 57509564 L1PB3 3668 - 106 305 155492 33 3 1 20 0 1 4 47 30 82 5 4 24 chain 19550 chr8 146364022 + 57512224 57512467 AluY 311 + 38 282 128515 94 0 1 149 chain 8983 chr8 146364022 + 57533415 57533516 L1PA2 6032 + 5931 6032 165699 101 chain 8769 chr8 146364022 + 57538680 57538791 MER31A 484 + 5 116 166823 111 chain 525700 chr8 146364022 + 57542961 57550329 L1PA7 6471 - 12 6465 4613 827 1 2 9 1 0 77 1 0 5 0 1 147 2 1 370 1 0 7 0 1 334 5 9 463 1 3 200 0 1 356 10 1 13 4 2 8 635 0 60 9 13 26 6 1 367 318 0 178 2 0 170 0 1 79 0 22 64 0 1 61 1 0 516 0 1 185 0 1 721 0 20 675 0 1 453 chain 6057 chr8 146364022 + 57553877 57554114 MER34B-int 733 - 123 351 184766 21 30 33 9 3 0 26 77 68 38 1 0 4 8 9 20 chain 12214 chr8 146364022 + 57566707 57566901 MER72 723 + 4 201 151369 73 2 0 15 1 2 24 17 21 62 chain 23624 chr8 146364022 + 57619073 57619354 AluY 311 + 28 310 112441 104 0 1 177 chain 26548 chr8 146364022 + 57646583 57646875 L1PA4 6152 + 5858 6150 97848 292 chain 8106 chr8 146364022 + 57662141 57662237 Tigger3a 397 - 143 239 170459 96 chain 28223 chr8 146364022 + 57670426 57670790 THE1C 375 - 6 375 92219 20 1 0 123 0 1 183 0 5 37 chain 7902 chr8 146364022 + 57676894 57676991 L1MC1 2226 - 409 506 171635 97 chain 20866 chr8 146364022 + 57681263 57681624 THE1B 368 - 0 368 124405 90 2 3 35 68 71 52 5 6 79 0 2 30 chain 159824 chr8 146364022 + 57685789 57687605 L1PA5 6144 - 6 1799 23364 332 0 1 504 0 4 391 28 0 561 chain 547614 chr8 146364022 + 57719134 57725284 L1PA4 6152 - 0 6152 1751 2866 1 0 1230 0 1 280 0 2 1773 chain 56407 chr8 146364022 + 57727753 57728359 L1PA2 6032 - 175 781 54902 606 chain 15054 chr8 146364022 + 57728359 57728529 L1PA2 6032 + 5862 6032 141158 170 chain 27014 chr8 146364022 + 57736193 57736554 THE1B 368 + 0 356 96240 172 2 1 25 3 0 94 2 1 63 chain 9139 chr8 146364022 + 57758078 57758253 THE1C 375 - 13 207 164864 51 0 1 59 51 69 14 chain 210779 chr8 146364022 + 57759751 57762453 L1PA10 4194 + 381 3066 18450 12 8 1 9 1 0 82 6 4 8 0 8 374 7 1 440 4 0 151 1 0 93 1 0 144 1 2 73 0 1 43 0 3 34 1 0 24 6 0 415 7 8 83 1 0 235 0 1 33 1 0 199 1 0 204 chain 241268 chr8 146364022 + 57764825 57767533 L1PA4 6152 - 0 2714 16709 84 0 1 255 1 0 504 0 4 335 0 1 1361 0 1 168 chain 13683 chr8 146364022 + 57795916 57796182 L1PB1 5432 + 5159 5406 145655 9 2 0 52 2 1 16 1 0 10 0 5 29 1 0 12 6 3 13 10 0 17 3 1 5 1 0 14 2 0 24 2 1 21 1 0 8 0 1 5 chain 10047 chr8 146364022 + 57829642 57829749 U6 107 + 0 107 160331 107 chain 53552 chr8 146364022 + 57829749 57830334 L1PA3long 6157 + 5572 6157 56642 585 chain 69374 chr8 146364022 + 57831533 57832351 L1PA7 6471 + 5642 6459 48654 679 1 0 138 chain 2820 chr8 146364022 + 57842719 57842749 L1PA5 6144 - 12 42 228456 30 chain 107096 chr8 146364022 + 57849857 57851317 L1P2 5180 + 2 1482 34944 148 1 0 44 10 9 41 1 0 159 4 5 6 1 0 32 8 0 69 1 0 50 1 0 168 0 1 53 0 15 90 8 12 321 21 33 10 0 1 213 chain 65177 chr8 146364022 + 57851317 57852126 L1PA6 6164 + 5357 6161 50405 304 1 0 6 4 1 11 1 0 323 19 19 140 chain 122608 chr8 146364022 + 57862999 57864534 THE1B-int 1605 - 25 1605 30190 80 0 1 630 10 14 154 1 6 124 0 1 48 0 3 5 0 1 8 2 5 33 0 2 8 0 25 432 chain 22037 chr8 146364022 + 57874145 57874411 AluSp 311 + 31 294 120078 101 3 0 162 chain 15742 chr8 146364022 + 57909636 57909848 AluY 311 + 3 293 139136 115 13 0 14 0 1 26 0 90 44 chain 35454 chr8 146364022 + 57916058 57916578 MER9a3 513 + 0 505 75615 18 0 2 26 0 1 64 0 1 4 5 14 80 29 3 43 4 3 174 2 3 9 2 0 60 chain 20087 chr8 146364022 + 57924871 57925101 L1PA5 6144 + 5898 6128 126865 230 chain 159229 chr8 146364022 + 57933761 57935722 SVA_D 2077 + 1 2064 23437 18 1 0 18 0 5 6 1 0 9 1 0 827 0 83 20 0 51 153 1 31 8 1 0 117 1 0 10 2 1 30 0 1 4 9 8 43 75 0 267 6 0 212 0 20 121 chain 1414 chr8 146364022 + 57935082 57935116 SVA_D 2077 + 1058 1092 121214 34 chain 149213 chr8 146364022 + 57936303 57938080 L1PA4 6152 + 4406 6140 24727 507 65 18 351 1 5 7 1 0 833 0 1 12 chain 6292 chr8 146364022 + 57941483 57941560 MSTC 436 + 19 95 182866 54 1 0 22 chain 48929 chr8 146364022 + 57948903 57949473 LTR22 571 - 0 571 59793 288 0 1 282 chain 58807 chr8 146364022 + 57952805 57953882 MER4E1 777 - 7 758 53520 106 4 0 75 317 0 49 6 0 27 0 1 146 1 0 4 0 1 156 1 0 156 0 1 29 chain 41057 chr8 146364022 + 57954093 57954619 LTR10G 522 - 0 522 67825 73 4 1 95 1 0 236 2 1 12 0 1 103 chain 5511 chr8 146364022 + 57963520 57963691 MER31A 484 + 267 458 189935 12 0 1 25 2 9 22 77 88 22 0 1 11 chain 115343 chr8 146364022 + 57983370 57984797 SVA_D 2077 - 21 1968 32666 618 0 535 632 119 115 19 17 6 22 chain 84984 chr8 146364022 + 57986694 57987728 L1PA8A 6298 - 7 1034 41516 93 0 1 183 8 0 433 2 1 6 0 1 53 1 0 4 5 6 20 2 1 33 0 1 191 chain 26311 chr8 146364022 + 57994140 57994512 L1PB 1623 - 841 1212 98779 282 30 29 60 chain 106056 chr8 146364022 + 57996587 57998183 L1PB1 5432 + 3914 5424 35240 284 6 5 365 2 1 57 3 0 199 8 2 56 20 16 92 8 5 99 11 10 10 35 0 21 1 0 11 20 15 5 2 0 53 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 47 33 24 1 0 21 1 0 11 1 0 18 1 0 4 chain 25608 chr8 146364022 + 58009017 58009316 AluYf4 310 - 13 310 101686 179 2 0 118 chain 56711 chr8 146364022 + 58013404 58014153 L1MA1 4479 + 1235 1990 54710 155 0 1 293 3 4 56 0 2 49 1 3 153 3 2 6 0 1 30 chain 46975 chr8 146364022 + 58014172 58015039 L1PB1 5432 - 9 821 61228 5 1 0 14 2 1 9 7 5 19 1 0 24 26 20 18 18 8 5 1 0 11 4 3 44 1 0 16 2 1 52 2 0 10 10 6 8 1 0 6 1 0 26 69 31 12 11 11 77 7 15 10 0 1 285 0 7 52 chain 22923 chr8 146364022 + 58017812 58018103 AluSc 308 + 10 299 115996 139 4 5 137 3 0 8 chain 45866 chr8 146364022 + 58021555 58022150 L1PA10 4194 + 3558 4150 62161 320 8 6 30 0 1 189 0 1 11 3 0 34 chain 540618 chr8 146364022 + 58071200 58077213 L1PA3long 6157 - 1 6157 2718 16 0 6 646 0 4 2786 0 1 1073 0 1 582 0 1 136 0 128 34 1 0 571 17 20 151 chain 10652 chr8 146364022 + 58085873 58086022 L1PA15-16 3068 + 329 477 157600 24 2 0 43 8 9 72 chain 25911 chr8 146364022 + 58101475 58101918 MER1A 529 + 65 516 100368 13 3 0 5 47 52 79 1 0 3 7 0 153 0 3 27 1 7 49 12 17 43 chain 72094 chr8 146364022 + 58112161 58113123 LTR5_Hs 974 - 0 974 47440 103 20 18 19 8 15 163 1 0 188 0 1 68 1 0 109 0 1 120 1 0 40 6 14 115 chain 3513 chr8 146364022 + 58148717 58148758 Ricksha_c 1012 + 89 130 215173 41 chain 15779 chr8 146364022 + 58169186 58169363 L1PA4 6152 + 5973 6151 139020 28 0 1 149 chain 299284 chr8 146364022 + 58203490 58206849 L1PA4 6152 - 0 3373 13466 6 0 5 2377 0 3 245 0 1 18 0 4 289 0 1 424 chain 16069 chr8 146364022 + 58227482 58227721 L1PA8 5853 + 5618 5853 138149 59 3 2 10 16 15 36 2 1 21 1 0 91 chain 146443 chr8 146364022 + 58231686 58233509 L1P1 4361 + 4 1835 25099 198 3 4 350 4 9 468 0 1 44 2 1 354 5 6 377 0 1 18 chain 494247 chr8 146364022 + 58233509 58239572 L1PA4 6152 - 0 6142 7157 144 29 29 413 0 1 182 1 0 48 0 1 139 0 2 564 1 0 277 0 4 182 4 0 6 0 4 377 0 1 568 0 18 58 0 2 1688 1 0 266 9 0 341 60 78 15 1 0 103 0 17 23 46 49 303 8 7 5 0 1 61 7 33 9 2 1 122 chain 27686 chr8 146364022 + 58303327 58303752 LTR7 482 + 0 475 94090 87 0 1 13 15 14 117 1 22 10 1 32 4 1 0 54 1 0 17 1 0 48 13 14 42 chain 37768 chr8 146364022 + 58332752 58333164 L1PA2 6032 + 5619 6032 72464 322 0 1 90 chain 221315 chr8 146364022 + 58370487 58373614 HERVK22-int 3844 + 313 3463 17794 598 4 5 85 9 0 266 0 1 55 5 0 9 16 15 71 0 1 660 0 3 188 0 1 7 1 0 138 0 85 99 9 0 7 0 1 4 8 16 195 0 1 223 1 0 71 2 1 5 1 0 18 1 0 31 5 4 21 22 20 19 4 0 10 1 0 41 6 4 14 5 1 4 1 0 4 1 0 6 5 0 12 2 0 5 2 0 5 2 0 3 2 0 9 1 0 8 63 47 20 7 4 4 1 0 25 chain 235846 chr8 146364022 + 58397729 58400668 L1PA7 6471 + 3506 6465 16985 98 1 3 72 9 0 156 0 1 79 6 7 293 1 0 70 14 21 62 15 16 103 0 1 84 1 0 6 0 1 92 0 8 307 0 2 368 0 1 257 0 4 20 0 2 825 chain 4561 chr8 146364022 + 58432256 58432331 L1MA8 2339 - 143 216 200094 29 13 11 33 chain 37373 chr8 146364022 + 58441096 58441570 MER4A1 472 + 0 472 72998 25 1 0 201 2 1 245 chain 47767 chr8 146364022 + 58465432 58465951 L1PA2 6032 - 9 529 60645 141 0 1 378 chain 20634 chr8 146364022 + 58465952 58466172 L1PA2 6032 + 5264 5484 125174 220 chain 4104 chr8 146364022 + 58479623 58479672 MER49 923 - 25 75 205882 17 0 1 32 chain 235796 chr8 146364022 + 58480266 58482949 L1PA5 6144 + 3383 6113 16992 846 0 1 639 0 1 497 7 8 146 0 2 431 0 42 117 chain 44889 chr8 146364022 + 58505299 58505799 L1PA3long 6157 - 0 505 63189 16 0 5 484 chain 3425 chr8 146364022 + 58515943 58515980 MLT1F 544 + 204 241 216657 37 chain 23560 chr8 146364022 + 58529953 58530242 AluY 311 + 2 296 112795 44 0 4 82 0 1 163 chain 357654 chr8 146364022 + 58554466 58559288 L1PA8 5853 - 1248 5741 11411 235 1 0 182 0 2 7 0 1 698 2 0 84 0 1 76 321 3 378 0 4 141 0 7 409 2 0 300 29 0 61 0 3 22 0 1 27 6 11 403 1 0 4 0 1 229 1 2 310 11 5 689 0 4 193 chain 280647 chr8 146364022 + 58575025 58578170 L1PA3long 6157 - 6 3148 14609 1349 2 0 1631 2 1 161 chain 4411 chr8 146364022 + 58604596 58604939 MLT1D 503 - 19 365 201784 9 2 0 19 187 177 31 70 85 25 chain 496663 chr8 146364022 + 58607422 58613803 L1PA7 6471 + 0 6461 7026 14 0 2 37 1 0 134 11 11 97 29 6 104 23 13 72 3 24 96 3 4 184 0 1 47 12 13 77 19 14 384 1 4 5 0 3 90 2 1 320 6 8 221 0 2 645 1 2 288 1 0 124 0 27 186 5 0 84 0 2 156 1 0 109 5 6 52 4 8 106 0 18 30 1 2 79 7 8 29 0 19 396 1 0 4 4 5 27 0 9 262 0 4 381 1 0 569 0 3 482 0 1 174 4 5 171 chain 207952 chr8 146364022 + 58619474 58622096 L1PA8 5853 + 3236 5852 18641 754 4 0 3 4 0 447 0 5 93 0 1 464 1 0 6 0 2 237 0 1 272 2 0 43 1 0 45 2 0 46 5 7 17 1 0 6 6 5 45 10 9 8 0 1 6 2 1 92 chain 109006 chr8 146364022 + 58626721 58627952 L1PA5 6144 + 4897 6128 34439 1231 chain 91498 chr8 146364022 + 58641729 58642793 L1PA5 6144 - 12 1075 39134 755 1 0 308 chain 8473 chr8 146364022 + 58654916 58655238 MLT1B 390 - 15 325 168439 101 198 186 23 chain 11410 chr8 146364022 + 58657909 58658167 L1PB1 5432 - 10 246 154643 18 1 0 4 10 9 20 2 1 24 25 20 15 9 0 11 2 0 19 1 0 45 1 0 15 4 3 20 0 1 6 1 0 5 chain 20440 chr8 146364022 + 58685204 58685466 L1PA8 5853 + 5249 5521 125784 199 8 18 55 chain 3779 chr8 146364022 + 58685466 58685508 L1PA8 5853 + 5522 5564 210667 42 chain 4126 chr8 146364022 + 58685510 58685555 L1PA8 5853 + 5565 5610 205566 45 chain 6362 chr8 146364022 + 58685557 58685635 L1PA8 5853 + 5610 5687 182296 72 1 0 5 chain 8059 chr8 146364022 + 58685682 58685791 L1PA8 5853 + 5745 5853 170701 15 1 0 93 chain 13156 chr8 146364022 + 58689190 58689527 THE1D 372 + 0 335 147623 37 19 10 19 18 20 14 7 10 54 73 74 36 10 11 50 chain 24803 chr8 146364022 + 58699812 58700166 THE1A 353 + 0 353 105875 26 0 1 76 8 7 99 11 10 10 0 1 4 2 1 118 chain 50827 chr8 146364022 + 58753702 58754358 LTR12_ 688 + 0 681 58416 53 0 41 44 24 8 535 chain 112302 chr8 146364022 + 58774974 58776453 THE1C-int 1605 + 45 1593 33591 400 0 7 162 0 50 7 0 1 7 1 8 320 5 6 138 44 46 84 0 1 311 chain 98523 chr8 146364022 + 58781161 58783013 L1PA8 5853 - 0 1255 37145 93 1 0 7 0 17 48 2 1 10 2 1 47 2 0 21 609 0 39 6 5 552 0 2 7 2 0 251 0 1 153 chain 19728 chr8 146364022 + 58783015 58783244 L1PA8 5853 + 4376 4605 128020 229 chain 28819 chr8 146364022 + 58787055 58787453 LTR7 482 - 12 482 89804 103 1 2 57 1 2 11 1 32 38 0 1 109 8 46 69 chain 29902 chr8 146364022 + 58854365 58854770 LTR7 482 - 9 482 85086 165 3 1 43 8 40 109 9 47 68 chain 24525 chr8 146364022 + 58872801 58873092 L1P2 5180 - 2990 3281 105074 291 chain 157226 chr8 146364022 + 58873092 58874872 L1PA5 6144 + 4364 6142 23697 1278 0 1 242 1 0 133 0 2 116 4 0 6 chain 26411 chr8 146364022 + 58890763 58891115 THE1A 353 + 0 349 98370 109 2 1 102 12 10 127 chain 35083 chr8 146364022 + 58896262 58896724 LTR2 463 + 0 459 76073 57 5 4 160 0 5 13 6 0 142 0 1 29 1 0 28 1 0 20 chain 15180 chr8 146364022 + 58916827 58917021 Tigger1 2417 - 1395 1589 140823 63 1 0 48 0 1 82 chain 11298 chr8 146364022 + 58956037 58956169 L1PA5 6144 - 2 134 155062 132 chain 16963 chr8 146364022 + 59002510 59003069 Tigger2a 444 + 0 258 135692 48 0 6 46 9 0 29 4 5 70 305 6 48 chain 524264 chr8 146364022 + 59004806 59011546 L1PA7 6471 - 2 6471 4744 11 1 0 353 2 0 5 0 2 68 22 21 390 3 0 321 0 1 84 1 2 1350 24 25 51 5 4 200 0 7 43 0 1 33 2 0 36 0 1 7 0 4 812 1 2 31 1 0 63 308 7 1305 22 0 37 0 10 148 6 23 603 1 2 58 0 1 80 17 32 235 chain 31306 chr8 146364022 + 59015734 59016075 L1PA3long 6157 - 1 342 81984 341 chain 2829 chr8 146364022 + 59047741 59047771 MIRb 242 + 108 138 228221 30 chain 65542 chr8 146364022 + 59089066 59089775 L1PA3long 6157 - 0 710 50318 616 0 1 93 chain 22382 chr8 146364022 + 59090176 59090454 AluSc 308 + 9 292 118573 179 0 5 99 chain 31595 chr8 146364022 + 59107732 59108074 L1PA4 6152 - 1 343 81498 342 chain 21636 chr8 146364022 + 59110878 59111126 L1P2 5180 + 1597 1845 120980 248 chain 166120 chr8 146364022 + 59111126 59113058 L1PA5 6144 - 0 1925 22504 9 3 0 294 1 2 1262 0 5 19 10 0 334 chain 174714 chr8 146364022 + 59118095 59120647 L1PA14 3548 - 64 2550 21511 19 1 0 10 6 0 38 1 0 15 5 4 5 1 0 16 4 2 32 15 11 50 1 0 61 1 0 65 40 42 109 2 0 5 2 0 47 2 0 14 3 1 40 1 9 56 0 1 13 14 13 118 1 0 4 2 0 148 4 3 37 0 4 127 31 6 148 9 8 69 1 11 152 0 3 177 44 0 277 0 7 353 0 1 60 1 0 95 chain 40995 chr8 146364022 + 59147591 59148081 HERV1_LTRc 486 + 0 480 67916 95 5 0 334 5 0 51 chain 13178 chr8 146364022 + 59181508 59181690 MER30 238 - 0 202 147560 99 1 0 9 3 24 70 chain 9483 chr8 146364022 + 59181712 59181869 L1P4 1494 + 1171 1331 163148 86 13 11 32 1 6 25 chain 307183 chr8 146364022 + 59199525 59203001 L1PA4 6152 - 5 3485 13123 928 2 1 259 0 1 1010 1 0 7 0 1 205 0 4 377 0 1 170 1 0 46 0 1 249 5 1 184 0 3 32 chain 69159 chr8 146364022 + 59235339 59236090 L1PA3long 6157 + 5395 6147 48734 607 0 1 144 chain 265524 chr8 146364022 + 59245040 59248849 L1PA10 4194 + 223 4150 15414 9 2 0 9 1 0 6 7 6 18 6 4 11 1 0 6 96 80 8 1 0 14 7 0 9 3 2 79 2 0 615 10 11 329 3 2 15 15 10 71 1 0 156 0 119 19 0 3 165 11 10 56 0 6 39 1 2 11 8 16 70 7 1 14 13 6 72 0 1 243 116 129 88 0 1 176 21 45 522 0 1 457 2 0 152 3 0 33 chain 10382 chr8 146364022 + 59253838 59253980 L1MA2 4263 - 152 286 158776 6 1 0 47 7 0 81 chain 27094 chr8 146364022 + 59262171 59262458 AluYg6 310 - 23 310 95961 287 chain 4003 chr8 146364022 + 59267112 59267158 Tigger2 2703 + 2577 2623 207358 46 chain 536448 chr8 146364022 + 59282718 59288732 L1PA3long 6157 + 0 6150 3384 152 12 13 616 0 128 17 0 1 697 0 1 894 0 2 384 1 0 1449 0 4 1644 0 6 6 6 0 136 chain 39641 chr8 146364022 + 59297112 59297569 L1PA4 6152 + 5690 6152 69835 288 1 6 168 chain 7288 chr8 146364022 + 59300417 59300497 L1PA6 6164 + 6079 6159 175521 80 chain 12445 chr8 146364022 + 59300769 59300929 L1P4 1494 - 104 263 150479 40 1 0 119 chain 27569 chr8 146364022 + 59313848 59314144 AluYd8 298 + 0 296 94437 296 chain 37122 chr8 146364022 + 59365779 59366230 LTR2 463 + 0 463 73351 56 0 7 64 0 3 219 1 3 111 chain 44738 chr8 146364022 + 59373265 59373779 MER9a3 513 + 0 513 63346 233 2 1 279 chain 49404 chr8 146364022 + 59374696 59375554 LTR6B 557 + 0 557 59449 284 300 0 111 1 0 162 chain 22564 chr8 146364022 + 59376071 59376370 AluY 311 + 4 307 117743 12 3 4 34 0 9 69 0 1 104 13 6 64 chain 99649 chr8 146364022 + 59381543 59383068 THE1C-int 1605 + 0 1596 36870 14 2 1 17 13 16 62 0 54 162 1 7 107 9 16 55 0 1 6 1 0 42 0 7 58 26 38 23 41 28 44 6 0 126 0 2 102 4 3 55 8 9 60 55 54 100 0 3 23 0 3 251 5 0 47 chain 115781 chr8 146364022 + 59395950 59397206 L1HS 6032 + 4782 6030 32533 1175 1 0 61 7 0 12 chain 23131 chr8 146364022 + 59415650 59415943 THE1B-int 1605 + 451 744 114994 293 chain 6007 chr8 146364022 + 59436509 59436583 MER53 195 + 0 74 185174 74 chain 73150 chr8 146364022 + 59443497 59444403 L1PA8 5853 + 4908 5847 46945 102 2 0 76 1 43 433 1 0 48 2 0 68 2 1 11 1 0 50 2 1 19 2 1 86 chain 25601 chr8 146364022 + 59444404 59444751 L1M1 2793 - 119 468 101722 45 1 0 15 0 3 218 0 6 8 7 1 53 chain 6566 chr8 146364022 + 59482095 59482192 L1MC1 2226 - 225 316 180733 6 2 0 15 3 0 66 1 0 4 chain 3132 chr8 146364022 + 59525509 59525563 L1MEf 1413 + 941 998 222330 22 7 10 25 chain 101395 chr8 146364022 + 59529712 59530868 L1PA6 6164 + 4997 6154 36422 1122 0 1 34 chain 55983 chr8 146364022 + 59533802 59534737 L1PA15 4387 - 21 914 55130 10 1 0 6 1 0 21 4 2 12 4 2 35 1 0 8 6 3 38 7 1 11 15 10 22 2 1 54 2 1 25 1 0 88 0 2 12 26 1 5 2 0 64 1 0 27 15 14 61 4 0 10 8 20 166 0 1 160 chain 3611 chr8 146364022 + 59538002 59538040 MLT2B4 540 + 502 540 213475 38 chain 44682 chr8 146364022 + 59539150 59539846 L1PB2 3958 - 127 804 63281 56 2 1 16 5 3 73 5 4 43 4 5 13 1 0 72 1 0 20 5 6 67 4 0 8 7 5 65 5 0 11 1 0 8 1 0 32 21 19 150 chain 77137 chr8 146364022 + 59539846 59540870 L1PB2 3958 + 2142 3145 44893 89 6 12 241 5 0 224 26 5 211 1 0 221 chain 55097 chr8 146364022 + 59557028 59557682 L1PA7 6471 + 5814 6470 55645 385 0 4 24 1 0 70 0 1 4 1 0 8 1 0 160 chain 23613 chr8 146364022 + 59568202 59568492 AluY 311 + 18 307 112506 114 0 1 11 3 0 7 0 3 109 0 2 29 4 0 13 chain 25950 chr8 146364022 + 59569103 59569410 AluY 311 + 0 304 100209 56 5 1 75 0 1 171 chain 5823 chr8 146364022 + 59569513 59569582 MER53 195 + 115 184 186915 69 chain 11561 chr8 146364022 + 59573633 59573863 LTR47A 437 + 1 243 154064 119 53 79 24 14 0 20 chain 5578 chr8 146364022 + 59575518 59575586 MER67A 545 + 12 80 189304 68 chain 83948 chr8 146364022 + 59584297 59585263 LTR5_Hs 974 - 0 974 41929 143 5 6 8 0 2 611 0 2 102 0 3 97 chain 132728 chr8 146364022 + 59588379 59589841 SVA_D 2077 - 21 2077 27475 618 0 535 168 0 41 639 0 18 37 chain 36721 chr8 146364022 + 59603416 59603877 LTR2 463 + 0 463 73928 299 1 2 61 12 13 88 chain 428853 chr8 146364022 + 59605856 59610969 Harlequin-int 5206 + 125 5206 9336 9 0 1 238 6 0 109 3 0 281 1 3 241 1 0 167 15 0 23 10 2 93 2 1 963 7 6 216 0 1 128 0 2 797 0 1 255 0 1 13 4 0 41 2 1 824 2 1 469 0 1 193 chain 37016 chr8 146364022 + 59610969 59611431 LTR2 463 + 0 463 73497 65 1 0 80 0 1 216 12 13 88 chain 23758 chr8 146364022 + 59625149 59625449 MER47A 366 - 0 301 111723 247 0 1 53 chain 391448 chr8 146364022 + 59638769 59643354 L1PA4 6152 + 209 6143 10410 132 12 14 125 3 4 659 0 2 373 0 1 88 0 1347 506 12 1 762 2 0 261 1 2 17 0 3 851 0 3 324 0 1 217 0 1 240 chain 27484 chr8 146364022 + 59674184 59674666 L1PA14 3548 - 83 543 94702 10 6 0 41 1 0 15 2 1 11 1 0 8 12 12 24 45 40 82 1 0 84 1 0 6 3 1 19 4 0 106 chain 5939 chr8 146364022 + 59685813 59685895 L1PA8 5853 + 5776 5853 185790 45 6 1 31 chain 10706 chr8 146364022 + 59688572 59688962 L1PA14 3548 + 2729 3105 64229 52 1 0 17 0 1 139 10 1 9 0 1 4 2 0 47 2 0 5 2 0 100 chain 56619 chr8 146364022 + 59689021 59689670 SVA_B 1603 + 899 1597 54762 51 0 40 401 2 11 195 chain 8593 chr8 146364022 + 59689861 59690174 L1PA14 3548 + 3141 3442 64229 76 5 4 110 1 0 11 21 17 20 4 2 11 2 0 4 1 0 22 1 0 24 chain 91025 chr8 146364022 + 59705907 59707345 L1PB3 3668 + 2191 3614 39279 243 0 1 164 15 16 23 11 12 28 0 2 5 1 0 5 1 0 9 11 26 34 0 1 18 0 1 141 0 1 66 2 0 13 5 0 75 14 11 133 21 15 57 1 0 22 8 17 58 4 3 83 50 33 17 7 5 37 23 18 11 7 4 15 chain 22911 chr8 146364022 + 59807181 59807460 AluSx1 309 + 11 288 116058 122 2 0 155 chain 560083 chr8 146364022 + 59827249 59833276 L1PA2 6032 + 2 6029 353 6027 chain 29912 chr8 146364022 + 60039424 60039742 AluYb8 318 - 0 318 85060 318 chain 5318 chr8 146364022 + 60065113 60065171 L1PA6 6164 - 5 63 191833 58 chain 21318 chr8 146364022 + 60077193 60077507 L1MA2 4263 - 150 453 122810 8 1 0 38 16 9 92 1 0 9 4 3 97 1 0 47 chain 506380 chr8 146364022 + 60081638 60087237 L1PA3long 6157 - 421 6157 6443 1374 0 2 1097 2 1 2356 10 138 54 0 7 554 0 1 152 chain 7106 chr8 146364022 + 60111275 60111413 L1MC3 1789 + 1091 1236 176708 30 1 0 5 30 38 72 chain 78358 chr8 146364022 + 60114083 60115129 MER11C 1089 - 30 1089 44343 139 1 0 54 0 1 127 0 1 38 1 0 5 0 4 20 0 1 70 71 67 146 1 0 65 0 4 60 1 10 247 chain 3429 chr8 146364022 + 60135911 60135992 FAM 185 + 24 121 216578 35 29 45 17 chain 62083 chr8 146364022 + 60170397 60171145 L1PA6 6164 - 17 765 51859 131 0 6 4 6 0 607 chain 22903 chr8 146364022 + 60179959 60180231 L1PA5 6144 - 3 276 116092 249 5 6 18 chain 58845 chr8 146364022 + 60212252 60212935 L1PA7 6471 - 1 684 53492 4 1 0 564 1 2 113 chain 2957 chr8 146364022 + 60220525 60220650 L1MC4a 1092 - 105 209 225936 28 78 57 19 chain 305077 chr8 146364022 + 60242576 60246489 L1PBa1 4058 - 166 4045 13207 12 7 0 14 1 0 15 3 1 108 2 0 41 1 0 19 11 10 6 1 0 82 5 6 29 8 1 113 1 0 234 0 2 140 2 1 276 2 0 176 0 4 141 11 0 131 0 4 45 0 6 152 0 1 218 0 1 241 1 0 313 0 1 245 9 1 440 12 0 32 13 12 68 0 1 117 3 1 10 2 11 10 0 1 337 18 15 10 1 0 24 chain 33681 chr8 146364022 + 60259884 60260441 L1PREC2 3366 + 2476 3009 78125 271 0 10 49 1 0 44 1 0 4 42 34 17 5 0 15 10 8 23 37 20 38 chain 15030 chr8 146364022 + 60265687 60265895 MER107 203 - 0 201 141236 36 3 0 8 1 0 6 5 0 127 0 2 22 chain 19768 chr8 146364022 + 60289712 60289927 L1PA5 6144 - 436 651 127913 215 chain 39105 chr8 146364022 + 60289927 60290375 L1PA5 6144 + 5696 6144 70594 448 chain 350759 chr8 146364022 + 60293768 60298564 L1P2 5180 + 408 5170 11577 5 1 0 35 39 20 36 0 1 5 23 16 36 86 10 98 0 59 8 21 0 46 0 15 52 5 8 82 15 34 70 0 1 4 1 0 271 0 2 349 3 18 144 11 0 178 0 1 42 17 12 261 9 6 175 11 13 265 0 4 312 0 4 20 0 4 552 44 25 536 1 0 339 0 1 314 0 1 186 4 3 48 1 0 35 chain 39162 chr8 146364022 + 60299182 60299654 L1PA7 6471 + 5985 6459 70527 310 1 3 161 chain 9663 chr8 146364022 + 60324916 60325106 L1MC2 1988 + 15 202 162279 50 1 0 11 31 26 71 6 9 20 chain 83412 chr8 146364022 + 60329168 60330374 L1PB2 3958 + 2621 3838 42152 95 0 2 156 0 2 40 9 8 198 0 1 89 1 6 89 2 0 54 1 0 13 25 0 55 11 13 10 5 1 92 1 0 28 0 36 8 1 0 64 2 1 71 2 0 12 12 12 36 0 1 24 chain 60615 chr8 146364022 + 60330746 60331922 L1PREC2 3366 - 512 1403 52514 4 1 0 24 14 13 7 1 0 13 0 1 40 2 0 44 0 1 135 0 3 82 6 4 40 6 7 35 287 3 15 6 5 308 9 11 61 1 0 35 chain 16295 chr8 146364022 + 60331925 60332193 L1PA14 3548 + 3230 3481 137492 102 14 9 38 4 2 12 1 0 3 1 0 18 1 0 41 6 0 10 1 0 16 chain 29643 chr8 146364022 + 60334715 60335033 AluYb8 318 - 0 318 86093 318 chain 9763 chr8 146364022 + 60349411 60349551 L1PB4 2604 - 52 194 161778 50 16 18 74 chain 171110 chr8 146364022 + 60361213 60363277 L1PA7 6471 + 4399 6457 21927 117 1 0 615 2 0 7 0 2 147 0 1 333 4 0 86 1 0 745 1 0 5 chain 7464 chr8 146364022 + 60368443 60368529 5S 121 + 0 86 174374 86 chain 528033 chr8 146364022 + 60369393 60375531 L1PA4 6152 - 1 6146 4402 149 2 0 5 4 6 172 1 2 438 0 2 69 0 4 1814 0 9 115 9 1 199 1 2 654 0 12 211 0 1 391 1 2 686 6 9 5 3 0 360 17 0 257 1 0 192 10 12 366 chain 9690 chr8 146364022 + 60376708 60376824 L1PA4 6152 - 9 124 162142 9 1 0 106 chain 173838 chr8 146364022 + 60376824 60378779 L1PA4 6152 + 4071 6046 21606 484 8 0 663 0 25 56 2 0 5 0 4 501 0 1 236 chain 27757 chr8 146364022 + 60382449 60382899 L1PA8 5853 - 0 443 93841 25 9 0 6 0 9 13 10 10 28 1 0 18 1 0 49 9 8 8 1 0 71 2 0 44 11 10 144 chain 518887 chr8 146364022 + 60401714 60408079 L1PA7 6471 - 2 6440 5280 11 1 3 169 11 9 147 1 0 117 0 1 387 0 4 84 0 16 1511 7 6 61 0 1 445 2 1 85 10 14 104 0 1 337 3 4 55 1 2 138 2 6 585 0 5 848 0 1 360 0 3 152 0 6 89 6 36 245 8 10 132 8 0 70 1 5 172 chain 88104 chr8 146364022 + 60408452 60409502 MER11C 1089 - 17 1087 40332 256 0 1 77 0 1 45 0 4 367 0 4 62 0 9 133 1 2 109 chain 13036 chr8 146364022 + 60441034 60441209 MER30 238 - 0 189 148098 49 3 0 62 4 21 57 chain 11220 chr8 146364022 + 60447267 60447391 L1HS 6032 - 4184 4308 155345 124 chain 372155 chr8 146364022 + 60447391 60451543 L1PA3long 6157 + 1998 6157 11019 699 2 0 491 1 2 505 1 0 744 3 0 52 0 4 106 0 1 957 0 10 578 3 0 10 chain 140929 chr8 146364022 + 60454673 60456269 L1PA4 6152 + 4536 6152 25997 767 3 7 65 1 2 176 0 10 578 0 5 6 chain 23890 chr8 146364022 + 60477892 60478288 L1PB1 5432 - 1462 1821 110266 13 0 1 162 1 0 4 0 1 10 84 46 122 chain 98639 chr8 146364022 + 60478288 60479885 L1PB1 5432 + 3998 5420 37117 221 1 2 105 3 1 218 0 1 4 1 0 31 0 5 43 3 0 5 1 5 85 7 13 366 157 2 9 1 0 20 1 0 12 1 0 11 5 1 11 2 0 50 1 0 18 6 5 35 43 31 19 26 21 22 1 0 21 1 0 13 1 0 16 chain 80941 chr8 146364022 + 60577962 60578919 LTR13A 966 + 0 966 43222 73 0 4 585 4 0 68 1 2 144 1 9 81 chain 8164 chr8 146364022 + 60580211 60580314 MLT1C 463 - 16 119 170148 103 chain 3550 chr8 146364022 + 60614617 60614658 Charlie7 753 + 150 191 214543 41 chain 58442 chr8 146364022 + 60617615 60618273 L1PA5 6144 - 1504 2162 53630 658 chain 125655 chr8 146364022 + 60618273 60619734 L1PA5 6144 + 4658 6144 29199 461 0 1 152 0 19 242 0 3 542 4 6 60 chain 7384 chr8 146364022 + 60646288 60646460 L1MC2 1988 + 1502 1681 174879 19 0 7 58 58 59 26 1 0 10 chain 41320 chr8 146364022 + 60646578 60647081 L1PA7 6471 + 5963 6467 67508 168 0 1 335 chain 170415 chr8 146364022 + 60662944 60664873 L1PA5 6144 + 4208 6144 22005 136 0 4 279 0 1 842 0 2 205 0 1 358 1 0 108 chain 3207 chr8 146364022 + 60674195 60674230 LTR12C 1709 - 991 1026 220808 35 chain 12052 chr8 146364022 + 60674331 60674471 LTR12C 1709 - 801 940 151977 71 1 0 68 chain 176615 chr8 146364022 + 60681094 60683551 MER57-int 2662 - 8 2563 21293 28 5 2 26 25 19 30 1 0 6 8 6 12 36 21 64 0 30 18 1 0 59 2 0 3 1 0 421 5 6 68 0 3 98 0 1 49 0 1 196 0 1 40 1 2 40 3 1 4 0 1 89 3 0 333 0 91 70 2 0 280 0 1 26 1 5 4 1 0 124 1 0 60 2 0 163 2 8 36 1 0 9 chain 2956 chr8 146364022 + 60716641 60716715 L1MD2 1676 - 299 371 225948 15 3 2 21 17 16 18 chain 67414 chr8 146364022 + 60728454 60729263 L1PA7 6471 - 2993 3828 49479 28 0 1 349 0 4 277 1 22 154 chain 241913 chr8 146364022 + 60729265 60732234 L1PA7 6471 + 3497 6460 16674 109 0 1 223 14 12 765 0 2 264 0 8 65 4 3 70 28 11 466 1 2 123 1 0 81 0 2 434 0 1 321 chain 54803 chr8 146364022 + 60738564 60739382 MER4E 760 + 0 760 55838 23 0 1 127 31 34 28 0 1 134 54 0 36 0 2 145 29 17 204 0 1 7 chain 549841 chr8 146364022 + 60782358 60788381 L1PA2 6032 - 2 6027 1471 2469 1 0 2524 0 3 1029 chain 554442 chr8 146364022 + 60794415 60800567 L1PA3long 6157 + 5 6157 891 1232 0 1 2451 1 0 2468 chain 26655 chr8 146364022 + 60804437 60804735 L1PA5 6144 - 253 552 97468 108 0 1 190 chain 20371 chr8 146364022 + 60804735 60804976 L1PA5 6144 + 5895 6137 125991 134 3 4 104 chain 121223 chr8 146364022 + 60864028 60865409 L1PA4 6152 - 1110 2490 30629 8 0 1 340 6 0 338 0 4 689 chain 100411 chr8 146364022 + 60865409 60866513 L1PA4 6152 + 5047 6151 36651 1104 chain 49788 chr8 146364022 + 60867657 60868221 L1PA3long 6157 + 5589 6153 59168 564 chain 32866 chr8 146364022 + 60868230 60868611 L1PA6 6164 + 5782 6162 79428 371 1 0 9 chain 2897 chr8 146364022 + 60912864 60913079 LTR12C 1709 + 931 1068 227095 30 168 90 17 chain 3335 chr8 146364022 + 60913090 60913130 LTR12C 1709 + 837 877 218323 40 chain 96158 chr8 146364022 + 60916729 60917857 L1PA6 6164 + 5007 6142 37779 234 0 1 73 0 6 821 chain 2894 chr8 146364022 + 60922562 60922599 L1MB7 1623 + 1455 1491 227119 24 1 0 12 chain 19685 chr8 146364022 + 60926980 60927294 THE1C 375 - 43 375 128145 88 46 58 5 0 2 126 0 6 34 2 0 13 chain 71317 chr8 146364022 + 60936188 60937087 L1PA10 4194 - 44 940 47784 34 3 0 159 1 0 251 0 1 7 1 0 280 0 1 163 chain 29456 chr8 146364022 + 60937097 60937515 L1PA8 5853 + 5442 5853 86819 122 2 1 43 2 0 62 22 20 50 2 1 19 1 0 93 chain 44168 chr8 146364022 + 60946306 60946854 L1PA7 6471 - 4 557 63987 43 8 6 94 0 1 14 2 0 278 6 14 103 chain 34542 chr8 146364022 + 60949694 60950225 L1MA2 4263 + 3581 4115 76841 4 0 1 51 17 27 75 5 6 4 1 0 48 7 9 152 9 7 93 7 0 47 1 0 10 chain 3158 chr8 146364022 + 60986839 60986875 MLT2B1 522 + 486 522 221771 36 chain 531575 chr8 146364022 + 60989463 60995954 L1PA7 6471 - 3 6471 4012 12 3 0 756 0 2 77 2 1 687 0 1 64 0 1 609 2 4 244 4 12 286 1 0 4 0 1 95 0 1 268 4 0 58 0 1 298 0 1 281 8 1 63 35 0 90 0 1 406 9 0 70 1 0 496 1 0 304 1 20 351 4 5 487 1 2 377 1 0 31 chain 6376 chr8 146364022 + 61009107 61009177 THE1-int 844 - 193 263 182203 70 chain 511846 chr8 146364022 + 61037237 61043356 L1PA6 6164 - 5 6164 5994 150 5 6 1633 0 2 371 2 15 279 2 0 277 0 16 18 20 0 201 0 1 369 0 1 478 5 4 4 0 1 648 0 1 45 0 2 382 0 1 61 4 3 224 0 3 78 0 2 58 5 22 77 4 5 154 1 0 48 0 2 258 1 0 18 6 8 233 chain 3826 chr8 146364022 + 61044356 61044398 L1MC4 1079 - 197 239 209980 42 chain 13909 chr8 146364022 + 61059646 61059801 L1PA4 6152 + 5987 6143 144886 121 0 1 34 chain 7386 chr8 146364022 + 61065052 61065186 LTR12C 1709 - 832 965 154657 18 7 47 63 41 0 5 chain 15719 chr8 146364022 + 61065186 61065440 LTR12C 1709 - 521 781 139213 29 45 51 180 chain 2425 chr8 146364022 + 61065215 61065259 LTR12C 1709 - 994 1038 154657 44 chain 17280 chr8 146364022 + 61068027 61068207 AluYa5 310 - 7 187 134837 180 chain 553819 chr8 146364022 + 61072929 61079076 L1PA3long 6157 + 6 6157 968 3569 0 1 781 0 4 25 0 1 796 1 0 715 1 0 259 chain 131775 chr8 146364022 + 61079093 61080950 L1PB1 5432 + 3598 5424 27678 129 2 0 235 2 1 235 0 1 34 0 1 198 1 7 343 0 1 263 0 1 5 1 0 51 3 0 14 3 0 17 1 0 13 17 12 10 2 1 50 2 1 15 1 0 42 114 95 18 1 0 13 1 0 16 1 0 4 chain 6098 chr8 146364022 + 61093495 61093576 L1PA11 4918 + 4431 4508 184432 35 1 0 6 2 0 16 1 0 20 chain 7890 chr8 146364022 + 61127952 61128106 L1PB1 5432 + 5284 5417 171726 12 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 13 chain 4056 chr8 146364022 + 61156161 61156203 5S 121 + 0 42 206532 42 chain 132755 chr8 146364022 + 61159853 61161610 L1PA8 5853 - 42 1788 27468 51 1 0 19 2 1 60 2 1 71 2 0 46 1 0 235 3 4 309 0 8 7 7 0 47 0 1 427 20 20 164 0 1 51 15 5 99 0 1 118 chain 82165 chr8 146364022 + 61202297 61203342 MER11C 1089 - 30 1089 42697 321 0 1 38 1 0 5 0 4 95 6 4 24 33 35 215 0 4 63 0 1 19 0 5 225 chain 29165 chr8 146364022 + 61204996 61205303 AluYa5 310 - 3 310 88227 307 chain 83517 chr8 146364022 + 61206797 61207763 LTR13A 966 + 0 966 42111 128 0 1 637 1 0 200 chain 24350 chr8 146364022 + 61212708 61213130 MER4A1 472 - 0 418 108377 70 4 6 108 75 70 84 15 14 66 chain 177839 chr8 146364022 + 61213165 61215698 MER4-int 2692 - 0 2607 21180 18 0 2 34 0 2 48 13 23 102 1 0 94 42 61 24 0 2 7 0 3 85 1 0 49 0 1 117 8 1 13 0 1 59 0 1 56 1 0 134 1 3 19 0 5 258 4 5 31 1 0 28 0 16 139 1 7 119 6 14 6 1 0 105 5 7 79 10 2 53 3 1 140 21 17 33 1 8 154 5 9 251 0 6 112 4 21 8 15 0 14 chain 25738 chr8 146364022 + 61216100 61216455 THE1B 368 - 0 368 101126 71 0 16 69 14 12 36 1 0 164 chain 268842 chr8 146364022 + 61220535 61224129 HERVH-int 3825 - 0 3825 15241 733 1 4 73 5 4 209 11 0 384 5 4 5 0 1 224 0 1 81 46 51 620 9 0 158 67 37 49 0 1 4 1 0 251 3 6 11 4 5 122 1 3 4 1 0 10 5 6 7 0 151 18 20 18 14 1 121 18 8 7 76 2 1 333 chain 41677 chr8 146364022 + 61225633 61226500 MER41A 554 - 0 554 67059 124 317 1 291 0 2 42 1 2 92 chain 8929 chr8 146364022 + 61251719 61251860 MSTD 398 + 256 398 165983 83 23 24 35 chain 128654 chr8 146364022 + 61253896 61256196 L1PA14 3548 + 1497 3465 28407 118 11 0 71 0 4 72 50 47 81 7 6 67 0 1 50 0 1 33 0 1 127 0 1 181 280 0 142 1 4 32 1 0 24 0 3 126 62 0 25 0 41 40 1 0 33 0 3 100 10 8 14 9 7 41 8 4 88 0 12 9 16 0 17 2 0 6 1 0 83 2 1 90 0 1 12 8 7 11 5 1 36 4 2 12 1 0 5 9 8 9 1 0 40 6 0 10 chain 13127 chr8 146364022 + 61307730 61307931 MER47A 366 + 71 274 147737 56 6 7 36 0 1 60 12 12 31 chain 23971 chr8 146364022 + 61331972 61332304 LTR17 781 - 455 781 110502 145 3 2 23 1 0 82 9 6 12 1 0 56 chain 350079 chr8 146364022 + 61333493 61337544 HERV17-int 4347 - 0 4068 11603 1366 0 1 227 0 12 1161 2 1 104 1 0 121 0 1 109 0 1 269 1 0 191 6 10 206 1 0 13 0 2 273 chain 27581 chr8 146364022 + 61343132 61343428 AluYk11 308 - 12 308 94405 296 chain 91790 chr8 146364022 + 61346074 61347133 MER11C 1089 - 27 1089 39034 494 2 1 262 0 1 246 0 3 55 chain 10756 chr8 146364022 + 61347133 61347653 L1PA17 2846 - 182 692 77809 14 1 0 18 1 0 32 11 8 59 1 0 16 34 26 146 1 0 5 0 1 90 1 0 37 5 10 48 chain 522614 chr8 146364022 + 61351199 61357672 L1PA6 6164 - 10 6163 4903 320 0 1 936 1 0 254 1 0 122 0 4 602 5 6 201 1 0 5 1 0 217 1 0 633 322 0 663 0 1 1218 0 1 457 5 4 508 chain 496228 chr8 146364022 + 61360329 61366405 L1PA7 6471 + 3 6458 7055 232 0 5 86 0 1 85 14 7 494 4 8 216 2 1 72 0 4 29 16 16 12 7 8 130 0 1 536 0 2 539 2 1 604 0 1 259 3 2 5 0 1 189 0 4 17 0 1 360 0 4 52 23 374 98 0 9 10 0 1 54 1 0 779 0 1 308 1 0 837 chain 44746 chr8 146364022 + 61406020 61406632 LTR14B 630 + 9 630 63337 152 1 0 97 3 17 19 0 25 71 0 9 37 38 0 194 chain 72990 chr8 146364022 + 61406834 61407828 HERVK14-int 1672 + 1 990 47031 29 1 0 10 1 0 50 1 0 163 12 11 36 6 5 23 18 16 215 6 11 39 5 4 206 1 0 163 1 0 8 chain 34805 chr8 146364022 + 61411884 61412439 LTR14B 630 + 17 578 76467 135 10 9 101 0 11 19 0 25 23 23 23 28 0 9 13 55 17 148 chain 12549 chr8 146364022 + 61439940 61440169 THE1D 372 - 62 372 150047 113 59 140 57 chain 147674 chr8 146364022 + 61459456 61462036 SVA_D 2077 - 0 1863 24924 633 1 0 43 4 0 13 74 0 37 1 0 158 811 0 41 4 4 22 0 100 74 0 36 13 2 0 138 0 40 511 chain 1612 chr8 146364022 + 61460150 61460224 SVA_D 2077 - 791 865 92115 74 chain 37165 chr8 146364022 + 61460454 61461188 SVA_F 1814 - 523 1197 73287 17 1 0 60 0 49 199 57 43 42 0 1 25 1 0 27 86 0 12 1 0 39 0 3 33 54 41 30 33 36 17 chain 1524 chr8 146364022 + 61460740 61460786 SVA_F 1814 - 554 600 195849 46 chain 5253 chr8 146364022 + 61460883 61460969 SVA_F 1814 - 746 832 73502 86 chain 3298 chr8 146364022 + 61461054 61461108 SVA_F 1814 - 903 958 73502 30 0 1 24 chain 2494 chr8 146364022 + 61461138 61461168 SVA_F 1814 - 571 601 180715 30 chain 6946 chr8 146364022 + 61493706 61493871 Tigger4a 237 + 7 215 177856 22 1 25 13 27 37 6 3 0 8 6 0 53 1 19 25 chain 10032 chr8 146364022 + 61495293 61495421 MER85 139 - 0 139 160414 29 0 11 99 chain 39165 chr8 146364022 + 61507049 61507504 L1PA6 6164 - 5 461 70518 324 1 2 130 chain 29037 chr8 146364022 + 61508677 61509012 L1PA7 6471 + 5280 5614 88821 289 1 0 45 chain 64022 chr8 146364022 + 61509012 61510109 L1PA7 6471 + 5617 6417 51000 90 9 13 78 303 0 192 0 3 169 8 7 248 chain 3382 chr8 146364022 + 61510109 61510154 L1PA7 6471 + 6426 6469 217431 33 2 0 10 chain 25273 chr8 146364022 + 61516502 61516896 MSTA 426 + 1 402 103355 93 58 66 85 1 0 157 chain 17287 chr8 146364022 + 61524539 61524798 L1PA8 5853 - 6 259 134816 86 2 1 19 2 1 39 25 23 70 2 0 14 chain 21237 chr8 146364022 + 61619389 61619627 L1PA5 6144 - 9 247 123067 238 chain 2902 chr8 146364022 + 61668536 61668570 MER3 215 - 7 41 227001 34 chain 115426 chr8 146364022 + 61672805 61674061 L1PA3long 6157 + 4899 6157 32634 597 0 3 80 1 0 578 chain 2838 chr8 146364022 + 61704637 61704667 MIRc 230 - 100 130 228097 30 chain 12598 chr8 146364022 + 61738417 61738556 L1PA6 6164 - 17 156 149841 139 chain 11476 chr8 146364022 + 61739697 61739820 L1PA2 6032 + 5909 6032 154396 123 chain 4236 chr8 146364022 + 61752709 61752775 L1MB7 1623 - 899 967 204080 30 6 8 30 chain 48074 chr8 146364022 + 61796915 61797433 L1PA3long 6157 + 5628 6146 60423 518 chain 45959 chr8 146364022 + 61843663 61844259 L1PREC2 3366 + 1579 2188 62074 246 4 14 237 1 4 108 chain 44499 chr8 146364022 + 61847654 61848275 MER41B 635 + 0 620 63581 65 0 1 50 12 13 37 0 1 4 4 3 277 18 17 44 2 0 108 chain 15039 chr8 146364022 + 61853814 61853989 L1PA4 6152 - 12 187 141205 175 chain 17484 chr8 146364022 + 61886013 61886273 MER50 708 - 22 283 134304 136 1 0 31 33 35 59 chain 9155 chr8 146364022 + 61907223 61907328 L1PA2 6032 - 1452 1557 164339 105 chain 128092 chr8 146364022 + 61907328 61908731 L1PA2 6032 + 4624 6029 28547 358 0 2 1045 chain 5461 chr8 146364022 + 61922994 61923059 MER53 195 + 116 181 190402 65 chain 7918 chr8 146364022 + 61934455 61934564 L1PA16 3655 - 63 172 171538 5 0 3 6 3 0 95 chain 11126 chr8 146364022 + 61942165 61942308 L1PA7 6471 - 5 150 155710 13 0 1 33 0 1 97 chain 14204 chr8 146364022 + 61954257 61954442 L1PA16 3655 - 1731 1927 143869 129 0 2 44 0 9 12 chain 112716 chr8 146364022 + 61958430 61959656 L1PA3long 6157 - 882 2108 33474 1226 chain 76767 chr8 146364022 + 61959656 61960511 L1PA3long 6157 + 5287 6157 45096 382 0 15 473 chain 26563 chr8 146364022 + 61986289 61986590 AluYf4 310 + 0 302 97796 205 3 4 93 chain 25642 chr8 146364022 + 61998309 61998623 AluY 311 + 11 311 101532 27 2 0 111 12 0 162 chain 543937 chr8 146364022 + 62027938 62033952 L1PA3long 6157 - 1 6153 2221 173 0 2 602 0 1 162 0 4 2118 0 1 2187 1 129 624 0 1 81 0 1 66 chain 20921 chr8 146364022 + 62054645 62055004 THE1D 372 + 0 372 124208 52 24 26 66 71 82 146 chain 62401 chr8 146364022 + 62056624 62057364 L1PA7 6471 - 14 749 51724 213 1 0 207 6 0 21 0 1 221 0 1 71 chain 18823 chr8 146364022 + 62057640 62057866 L1PA7 6471 + 5436 5663 130599 33 0 1 193 chain 47089 chr8 146364022 + 62076109 62076824 LTR17 781 - 53 781 61132 45 0 2 5 2 0 219 16 22 50 1 13 45 1 0 72 5 4 15 1 0 55 4 3 22 1 0 41 28 29 30 1 0 56 chain 59001 chr8 146364022 + 62077489 62078199 LTR17 781 - 72 781 53396 320 1 0 62 0 1 17 10 0 181 0 9 119 chain 15866 chr8 146364022 + 62078212 62078404 MER4E1 777 + 585 769 138753 40 8 0 144 chain 43600 chr8 146364022 + 62080136 62080688 MER41A 554 + 0 554 64683 131 8 7 289 0 1 91 0 2 33 chain 394576 chr8 146364022 + 62089773 62095881 L1PA8 5853 + 105 5853 10299 22 23 8 18 124 126 13 199 184 47 60 41 11 8 9 37 45 42 39 38 40 14 9 9 116 40 39 219 0 1 462 4 6 78 6 5 326 0 1 119 0 4 540 0 2 18 0 1 508 4 5 359 0 1 295 1 2 36 0 4 228 5 4 4 0 1 8 0 3 350 0 1 37 316 0 68 35 1 392 2 0 44 0 1 28 0 2 119 14 46 224 0 1 90 1 0 43 3 1 71 1 0 8 12 7 7 6 0 39 2 1 19 1 0 93 chain 391920 chr8 146364022 + 62101581 62106087 L1PA5 6144 + 1632 6143 10396 6 4 0 494 0 1 1549 1 0 290 0 1 320 2 1 586 0 1 161 0 1 52 1 2 45 0 5 837 5 7 6 1 0 146 chain 44569 chr8 146364022 + 62114328 62116223 LTR10C 591 - 0 591 63510 484 1345 36 54 0 5 12 chain 23356 chr8 146364022 + 62121147 62121432 AluSc 308 - 10 296 113892 92 1 2 192 chain 78909 chr8 146364022 + 62125985 62127036 MER11C 1089 + 0 1063 44101 246 0 9 58 0 4 69 1 0 146 72 67 70 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 143 chain 57056 chr8 146364022 + 62130150 62131109 L1MA5A 2387 + 1333 2254 54497 51 15 12 35 1 0 124 10 14 67 20 19 101 22 24 175 24 23 55 11 10 26 1 0 86 2 0 30 1 0 33 3 0 14 30 0 22 chain 424456 chr8 146364022 + 62131759 62137248 L1PA8A 6298 - 7 5492 9431 76 27 24 9 0 4 674 0 1 13 2 1 75 12 2 550 20 19 261 27 3 74 0 1 400 1 0 96 0 1 124 6 7 367 0 3 125 0 1 25 3 2 262 0 5 17 5 0 27 8 14 295 1 0 58 0 14 97 8 1 46 9 2 14 0 1 780 41 50 125 6 9 123 0 1 149 0 1 146 3 6 174 5 7 123 chain 15473 chr8 146364022 + 62137248 62137432 L1P3 4156 + 2644 2828 139709 184 chain 4535 chr8 146364022 + 62157304 62157365 L1MC2 1988 + 1929 1988 200405 20 1 0 34 1 0 5 chain 51757 chr8 146364022 + 62160272 62161140 L1PA14 3548 - 63 904 57784 20 1 0 7 4 7 36 1 0 19 1 0 17 12 10 20 0 1 5 24 19 98 1 0 7 1 0 82 1 0 6 2 0 5 13 11 5 2 0 105 2 0 5 9 7 40 1 0 4 3 0 10 3 1 85 1 0 156 15 14 39 chain 439199 chr8 146364022 + 62161478 62167602 L1PA7 6471 - 4 6466 9073 240 14 8 519 0 2 81 0 3 305 8 6 405 0 1 289 0 2 119 1 2 370 6 7 14 0 1 607 5 2 848 1 0 156 5 4 928 32 33 20 4 13 96 37 37 52 26 51 122 17 0 35 23 44 168 8 84 31 401 626 131 chain 544355 chr8 146364022 + 62180574 62186573 L1PA2 6032 - 0 6029 2162 1269 0 1 532 0 4 2139 0 22 1101 1 4 704 6 5 179 0 1 68 chain 32895 chr8 146364022 + 62228288 62228685 L1PA7 6471 - 2 397 79379 12 3 0 230 1 2 151 chain 11306 chr8 146364022 + 62228685 62228816 L1PA7 6471 + 5932 6063 155046 131 chain 19225 chr8 146364022 + 62237066 62237301 THE1A-int 1579 + 0 237 129453 15 0 2 220 chain 21710 chr8 146364022 + 62260808 62261045 L1PA5 6144 + 5902 6139 121349 237 chain 159924 chr8 146364022 + 62267975 62269759 L1PA3long 6157 - 0 1786 23349 252 4 5 1135 0 1 393 chain 48762 chr8 146364022 + 62283248 62284007 L1PB1 5432 - 151 909 59901 45 2 1 14 2 1 51 17 11 14 1 0 10 9 8 12 12 16 136 0 3 148 0 7 33 11 9 128 11 8 103 chain 25753 chr8 146364022 + 62300060 62300569 L1PB1 5432 - 10 489 101071 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 7 2 0 13 28 16 12 3 0 5 0 2 36 5 4 16 2 1 47 7 5 9 2 0 3 2 0 10 21 22 10 7 0 6 0 5 160 chain 135714 chr8 146364022 + 62311702 62313584 L1PA11 4918 - 351 2232 26895 13 1 0 15 13 9 10 25 16 16 1 0 7 0 12 67 2 0 7 1 0 25 8 0 39 5 0 33 7 14 94 1 6 486 1 2 249 5 6 29 1 2 564 0 1 131 6 7 10 0 1 10 chain 7696 chr8 146364022 + 62342111 62342206 MSTD 398 - 302 397 172958 95 chain 61398 chr8 146364022 + 62346933 62347685 MER4E 760 - 5 751 52154 147 3 0 74 2 1 196 3 0 319 0 1 8 chain 6788 chr8 146364022 + 62376665 62376752 Tigger1 2417 - 2237 2325 179053 51 1 2 35 chain 520299 chr8 146364022 + 62387369 62393290 L1PA4 6152 - 13 6152 5124 482 0 1 1715 0 1 258 2 0 204 0 1 507 19 1 861 0 237 427 2 0 208 1 0 58 0 1 1177 chain 408769 chr8 146364022 + 62393803 62398660 L1PA5 6144 + 0 6138 9840 125 0 14 15 12 24 340 1 5 6 4 0 636 13 4 325 0 1266 852 7 1 299 3 4 14 1 2 42 0 1 9 0 3 1962 8 6 183 chain 41993 chr8 146364022 + 62410201 62410732 MER41A 554 - 24 554 66636 17 1 0 513 chain 10758 chr8 146364022 + 62418076 62418204 THE1A 353 + 225 353 157166 128 chain 10163 chr8 146364022 + 62418656 62418932 L1MB3 1562 + 1213 1461 159782 35 1 0 94 129 102 17 chain 44488 chr8 146364022 + 62421718 62422267 MER41A 554 - 0 554 63595 131 12 0 13 0 17 393 chain 23485 chr8 146364022 + 62427000 62427296 AluY 311 + 10 311 113192 43 1 5 74 0 1 178 chain 20019 chr8 146364022 + 62451855 62452242 MER50 708 - 22 634 127086 64 0 3 74 107 324 33 0 3 74 4 6 31 chain 3744 chr8 146364022 + 62453160 62453201 MSTA 426 + 380 421 211259 41 chain 174396 chr8 146364022 + 62485363 62487402 L1PA7 6471 + 4401 6458 21552 173 1 0 4 0 1 376 1 0 35 1 2 37 1 0 278 0 15 299 1 0 77 1 3 607 0 3 147 chain 21113 chr8 146364022 + 62489630 62489899 L1PA5 6144 + 5879 6141 123519 193 7 0 69 chain 17617 chr8 146364022 + 62490452 62490707 THE1D-int 1627 - 0 257 133945 33 0 3 14 1 0 26 1 0 5 0 1 17 6 7 147 1 0 4 chain 22745 chr8 146364022 + 62511773 62512042 L1PA5 6144 + 5878 6144 116846 261 3 0 5 chain 21555 chr8 146364022 + 62513858 62514128 AluSg7 307 + 39 299 121944 92 0 1 155 11 0 12 chain 26375 chr8 146364022 + 62616507 62616782 AluYa5 310 + 35 310 98515 275 chain 71786 chr8 146364022 + 62629065 62629911 THE1A-int 1579 - 13 859 47569 846 chain 165191 chr8 146364022 + 62664427 62666620 SVA_F 1814 - 0 1805 22629 601 51 0 32 1 0 4 1 0 188 300 0 27 48 14 50 1 0 10 1 0 228 0 1 650 chain 3582 chr8 146364022 + 62665028 62665079 SVA_F 1814 - 777 826 135610 26 1 0 17 1 0 6 chain 6624 chr8 146364022 + 62665312 62665396 SVA_F 1814 - 1066 1150 180279 84 chain 5021 chr8 146364022 + 62665427 62665505 SVA_F 1814 - 645 723 166896 78 chain 2959 chr8 146364022 + 62665513 62665545 SVA_F 1814 - 684 716 140867 32 chain 2588 chr8 146364022 + 62665545 62665605 SVA_F 1814 - 540 600 135254 60 chain 2070 chr8 146364022 + 62665632 62665680 SVA_F 1814 - 627 675 135254 48 chain 10765 chr8 146364022 + 62691129 62691254 L1PA5 6144 + 6019 6144 157129 125 chain 3047 chr8 146364022 + 62730531 62730563 U2 167 - 135 167 224052 32 chain 554266 chr8 146364022 + 62757557 62763713 L1PA3long 6157 - 0 6157 914 142 0 1 3691 1 0 863 0 1 4 1 0 9 0 1 1445 chain 399456 chr8 146364022 + 62876865 62881743 L1PA6 6164 - 2 6164 10118 8 2 0 69 18 0 68 0 1 184 1 0 507 11 13 75 0 1 24 0 1 525 7 8 32 1 0 280 0 4 671 1 0 501 0 1 4 5 0 200 38 37 167 0 3 89 7 16 242 0 1 104 0 1 110 0 2 167 0 1287 192 1 0 567 chain 40970 chr8 146364022 + 62904084 62904563 L1PA7 6471 - 37 526 67954 214 0 10 265 chain 166150 chr8 146364022 + 62904563 62906660 L1PA7 6471 + 3838 5934 22499 170 0 1 227 0 1 32 1 0 449 0 2 93 0 4 57 1 10 100 0 1 112 22 0 21 37 38 149 0 2 261 0 1 52 1 0 82 0 1 230 chain 535190 chr8 146364022 + 62906868 62912878 L1PA3long 6157 + 6 6152 3572 110 0 1 34 10 10 615 0 128 349 0 1 1443 1 0 232 0 3 334 0 4 2882 chain 51168 chr8 146364022 + 62913656 62914325 L1PA8 5853 - 1 671 58205 92 1 0 19 5 4 36 0 1 4 10 8 9 2 1 70 2 0 46 1 0 40 0 3 174 1 6 157 chain 28524 chr8 146364022 + 62916589 62917044 LTR12F 595 - 0 595 91084 236 11 99 11 1 25 9 0 82 24 33 4 14 25 0 91 chain 29319 chr8 146364022 + 62930146 62930455 AluYa5 310 - 1 310 87442 309 chain 115057 chr8 146364022 + 62934594 62935982 L1PA7 6471 + 5067 6461 32769 101 2 0 166 1 0 283 1 0 92 0 1 2 0 3 36 0 5 390 1 2 313 chain 14243 chr8 146364022 + 62944348 62944531 MER83C 372 - 17 197 143749 12 3 0 168 chain 12136 chr8 146364022 + 62953626 62953765 MER85 139 - 0 139 151671 139 chain 23639 chr8 146364022 + 62978145 62978433 L1PA5 6144 + 5856 6144 112360 4 1 0 92 3 4 188 chain 32046 chr8 146364022 + 62980642 62981047 THE1C-int 1605 + 15 425 80787 312 0 6 19 1 0 73 chain 79990 chr8 146364022 + 62985250 62986303 MER11C 1089 - 26 1089 43600 143 1 0 182 0 1 38 1 0 7 0 4 91 8 6 12 48 47 215 0 4 60 0 1 27 7 12 213 chain 73881 chr8 146364022 + 62991672 62992483 L1PA3long 6157 + 5338 6149 46572 811 chain 15509 chr8 146364022 + 62994161 62994341 L1PA5 6144 + 5948 6128 139861 180 chain 26887 chr8 146364022 + 62997052 62997374 L1P1 4361 + 4022 4341 96678 129 1 0 154 1 0 23 2 1 12 chain 22195 chr8 146364022 + 63009631 63009919 THE1B-int 1605 - 1258 1570 119375 147 0 24 42 2 1 5 0 1 92 chain 96294 chr8 146364022 + 63046060 63047192 L1PA5 6144 - 3 1130 37733 6 4 0 140 0 1 89 11 7 5 0 2 877 chain 18545 chr8 146364022 + 63096498 63096705 L1PA4 6152 + 5936 6143 131371 207 chain 3195 chr8 146364022 + 63123085 63123122 Tigger3b 1229 - 237 274 221029 37 chain 502744 chr8 146364022 + 63135689 63142155 L1PA7 6471 + 0 6467 6683 65 6 9 331 1 2 66 0 1 61 0 1 107 5 6 682 9 10 19 3 4 798 1 0 32 3 0 286 0 27 26 4 5 43 1 7 10 35 9 31 9 0 63 1 0 416 25 14 767 9 11 437 1 2 168 0 1 898 0 2 204 3 0 79 0 2 244 17 24 491 3 0 6 chain 14352 chr8 146364022 + 63148950 63149276 L1PB1 5432 - 12 311 143373 16 1 0 12 1 0 22 1 0 24 2 0 13 10 7 10 0 1 7 16 8 4 1 0 16 1 0 40 6 5 14 2 1 52 38 30 17 chain 392558 chr8 146364022 + 63150084 63155244 L1PA7 6471 - 5 6471 10376 9 5 0 709 0 5 41 0 2 79 3 2 132 1 5 53 1 0 5 1 2 226 0 1 77 161 5 443 0 4 150 0 1 37 1 0 650 0 1 274 0 4 67 0 1428 205 1 2 490 29 30 496 0 7 142 5 4 136 2 1 129 0 1 285 0 1 55 0 10 60 chain 2247 chr8 146364022 + 63151494 63151518 L1PA7 6471 - 1237 1261 236022 24 chain 68987 chr8 146364022 + 63187161 63187919 L1PA4 6152 - 6 765 48817 680 0 1 78 chain 288416 chr8 146364022 + 63190941 63194276 L1PA5 6144 - 2 3344 14130 632 0 1 200 10 16 181 1 0 1436 0 1 347 1 2 30 1 0 131 2 1 202 0 1 161 chain 511569 chr8 146364022 + 63200806 63206904 L1PA5 6144 - 4 6139 6019 1487 0 1 771 0 3 205 0 1 64 2 3 441 0 1 360 0 1 212 9 10 266 2 1 118 0 2 483 1 0 62 4 7 68 1 4 142 0 1 257 9 0 27 4 6 901 1 0 6 0 1 6 0 2 33 26 52 130 chain 96884 chr8 146364022 + 63209692 63210748 L1PA3long 6157 + 4957 6013 37589 1056 chain 12222 chr8 146364022 + 63210749 63210891 L1PA3long 6157 + 6015 6157 151338 142 chain 527883 chr8 146364022 + 63228849 63235033 L1PA4 6152 - 9 6151 4414 138 0 2 410 0 1 64 0 2 217 0 1 7 0 1 240 1 0 343 1 0 403 1 0 159 0 1 35 21 0 25 0 2 147 1 0 4 0 1 10 1 2 30 37 0 631 0 2 2101 0 3 144 0 1 426 3 0 6 1 4 184 0 1 376 0 1 17 chain 33067 chr8 146364022 + 63251110 63251558 MLT2A1 477 - 8 477 79101 41 2 0 10 7 33 215 4 1 169 chain 26510 chr8 146364022 + 63273148 63273485 L1P3 4156 - 1159 1497 98008 252 0 1 85 chain 31794 chr8 146364022 + 63275223 63275664 MER57A1 433 - 0 433 81182 146 0 6 6 12 7 48 0 1 81 15 6 115 1 0 17 chain 3288 chr8 146364022 + 63307285 63307320 SVA_F 1814 - 1405 1440 219238 35 chain 111216 chr8 146364022 + 63315345 63316913 THE1C-int 1605 + 0 1605 33882 13 6 5 199 0 2 106 3 9 111 0 7 11 4 5 214 60 70 177 0 1 250 0 1 124 5 10 161 10 16 6 6 0 20 2 0 5 10 17 65 chain 71984 chr8 146364022 + 63415658 63416659 MER11A 1151 - 0 1151 47480 59 8 7 163 0 9 54 9 43 13 1 0 56 0 4 53 1 0 8 10 13 110 1 0 21 0 1 4 0 1 86 6 7 50 0 1 60 0 2 28 12 9 46 0 2 63 0 99 79 chain 3198 chr8 146364022 + 63428613 63428648 MER50 708 - 154 189 220957 35 chain 9566 chr8 146364022 + 63448395 63448578 MER21A 919 - 723 917 162757 19 12 0 38 35 58 79 chain 113800 chr8 146364022 + 63469540 63471101 L1PB1 5432 - 28 1588 33148 13 1 0 9 0 1 11 1 0 24 2 0 14 23 38 13 1 0 45 1 0 15 2 1 50 3 1 10 5 1 12 1 0 5 0 3 24 7 0 5 1 6 187 13 11 192 0 1 90 3 0 778 chain 36482 chr8 146364022 + 63486369 63487012 L1MA3 4352 - 64 676 74260 6 1 0 22 2 0 81 1 0 8 6 9 28 92 72 45 0 1 85 20 6 25 0 1 68 1 3 152 chain 25799 chr8 146364022 + 63507959 63508266 LTR17 781 - 455 761 100877 17 10 0 181 0 9 99 chain 121636 chr8 146364022 + 63508549 63509929 HERV17-int 4347 - 0 1380 30500 1380 chain 91732 chr8 146364022 + 63524795 63526001 L1MA1 4479 - 3037 4250 39057 234 0 14 74 17 12 92 1 0 4 0 1 732 2 0 50 chain 25498 chr8 146364022 + 63572262 63572615 THE1B 368 + 0 368 102231 44 5 20 104 1 0 112 7 8 80 chain 19192 chr8 146364022 + 63579641 63579861 L1PA5 6144 + 5918 6138 129549 220 chain 6465 chr8 146364022 + 63581961 63582041 MER4D 903 + 792 872 181513 80 chain 394256 chr8 146364022 + 63619269 63624740 L1PB1 5432 - 15 5413 10308 4 1 0 9 1 0 13 1 0 21 1 0 16 32 27 16 9 0 10 3 0 20 1 0 44 1 0 13 16 15 42 2 0 9 16 11 9 1 0 24 46 1 7 1 0 244 8 0 8 21 29 88 0 1 53 0 3 52 3 0 345 38 39 308 0 1 203 1 5 24 0 1 655 0 1 147 0 1 56 6 5 339 2 0 563 0 1 49 0 1 28 0 1 301 5 9 127 25 10 13 1 0 86 0 3 67 0 1 247 0 1 382 1 0 226 0 1 33 0 1 267 31 32 29 chain 32630 chr8 146364022 + 63651424 63651836 L1PA7 6471 + 6060 6469 79796 187 3 4 62 5 6 140 5 0 10 chain 94746 chr8 146364022 + 63672251 63673335 L1PA4 6152 + 5064 6141 38152 43 0 1 175 8 0 858 chain 182496 chr8 146364022 + 63700095 63702152 L1PA4 6152 - 6 2061 20741 498 8 0 346 0 4 509 0 2 696 chain 73535 chr8 146364022 + 63702152 63702980 L1PA4 6152 + 3269 4098 46390 671 0 1 157 chain 56879 chr8 146364022 + 63711797 63712748 L1PB1 5432 + 4511 5422 54611 117 3 0 350 0 1 5 1 0 50 5 6 39 4 0 13 16 13 8 1 0 25 1 0 4 3 2 12 18 12 52 2 1 15 1 0 27 1 2 16 1 0 15 2 0 6 16 6 16 27 22 24 1 0 22 1 0 12 8 7 11 chain 550968 chr8 146364022 + 63713192 63719373 L1PA3long 6157 + 6 6157 1318 1842 1 6 522 0 1 794 0 1 264 0 1 251 37 0 1696 1 0 773 chain 86925 chr8 146364022 + 63721022 63722093 MER11B 1079 - 5 1079 40815 23 1 0 174 0 1 59 2 0 45 0 2 29 10 0 444 0 1 120 0 12 164 chain 123766 chr8 146364022 + 63726934 63728332 L1P1 4361 + 2625 4036 29785 539 0 1 80 0 12 75 1 0 600 0 1 103 chain 3264 chr8 146364022 + 63755782 63755820 MLT1D 503 + 307 345 219697 38 chain 351146 chr8 146364022 + 63762009 63766011 L1PA4 6152 - 0 4001 11564 141 7 0 8 0 2 2120 0 1 293 0 1 240 0 1 141 0 1 1052 chain 19618 chr8 146364022 + 63781717 63782014 L1PA8 5853 - 0 278 128339 93 1 0 19 2 1 42 34 19 71 2 0 33 chain 332999 chr8 146364022 + 63785283 63789479 L1PA8A 6298 + 2032 6291 12091 139 0 3 169 0 22 67 8 10 65 6 9 431 1 2 4 1 0 16 0 4 432 2 1 41 0 3 39 5 6 89 0 1 163 10 25 98 0 1 576 8 0 377 2 0 27 7 10 228 3 0 199 3 4 191 0 3 85 0 1 25 0 10 552 1 3 27 0 1 5 3 4 91 chain 86987 chr8 146364022 + 63791090 63792070 L1PA4 6152 - 16 999 40789 26 0 2 157 0 1 797 chain 32114 chr8 146364022 + 63799228 63799693 L1PA8 5853 - 0 466 80662 59 0 6 27 2 1 19 2 1 30 2 0 5 7 9 13 6 5 70 2 0 18 0 1 25 2 1 176 chain 42490 chr8 146364022 + 63803600 63804144 MLT2A2 560 + 0 560 66026 15 0 4 387 0 11 71 1 2 70 chain 18812 chr8 146364022 + 63827359 63827630 L1PA8 5853 - 0 272 130642 92 2 1 19 2 1 46 1 7 8 1 0 71 3 1 26 chain 23702 chr8 146364022 + 63842818 63843097 AluSq10 312 - 18 297 112024 85 1 0 4 0 1 189 chain 62560 chr8 146364022 + 63854028 63856706 L1PB1 5432 + 3024 5422 51648 173 4 0 494 0 1 10 1 2 18 1666 1401 11 26 34 52 2 1 16 2 1 39 4 3 16 2 0 14 8 0 16 9 6 14 2 0 24 1 0 21 2 1 12 2 1 17 chain 3115 chr8 146364022 + 63877038 63877073 MLT2D 439 - 0 35 222648 35 chain 511308 chr8 146364022 + 63885249 63891726 L1PA7 6471 - 14 6468 6040 244 0 1 72 0 3 184 1 2 102 1 0 46 0 4 96 4 5 74 0 2 642 0 1 204 0 3 193 0 1 7 2 1 244 1 2 389 4 5 101 4 1 343 1 7 118 31 8 46 14 12 262 6 5 394 0 1 79 0 2 7 16 16 245 1 0 12 0 1 338 17 7 162 3 4 7 1 0 160 16 0 1180 0 2 95 0 1 282 0 3 26 chain 47768 chr8 146364022 + 63909032 63909625 THE1D-int 1627 - 6 597 60644 202 1 0 29 1 0 360 chain 4704 chr8 146364022 + 63920797 63920879 MER74A 558 + 475 556 198482 53 16 15 13 chain 2907 chr8 146364022 + 63929123 63929155 MER6B 211 + 5 37 226918 32 chain 11943 chr8 146364022 + 63946359 63946523 L1PA16 3655 - 82 253 152430 98 6 13 60 chain 6571 chr8 146364022 + 63957957 63958037 HSMAR1 1287 + 1207 1287 180689 80 chain 17640 chr8 146364022 + 63958038 63958276 L1PA13 3608 - 1806 2059 133877 134 0 13 78 2 4 24 chain 11900 chr8 146364022 + 63961206 63961376 L1PA13 3608 + 1923 2093 152600 101 11 11 58 chain 20705 chr8 146364022 + 63961663 63962580 Tigger1 2417 + 1408 1806 124950 62 636 117 219 chain 90717 chr8 146364022 + 63964171 63965275 MER11A 1151 + 0 1151 39386 230 1 0 64 0 11 21 0 2 257 0 4 216 2 1 56 0 32 100 0 1 90 1 0 66 chain 29313 chr8 146364022 + 63971579 63971890 AluYa5 310 - 0 310 87490 184 1 0 126 chain 12126 chr8 146364022 + 63980349 63980541 L1PA16 3655 - 77 271 151709 28 12 13 111 11 12 30 chain 519767 chr8 146364022 + 63989749 63996202 L1PA6 6164 + 0 6162 5182 235 0 1 223 8 8 102 1 0 987 0 1 273 1 0 109 0 6 287 12 20 209 0 6 722 2 3 68 319 0 29 17 11 37 0 1 192 23 27 642 0 1 1113 0 6 573 0 1 269 chain 62445 chr8 146364022 + 64003849 64004615 L1PA8A 6298 + 5175 5939 51695 314 4 1 66 1 2 381 chain 17794 chr8 146364022 + 64009092 64009330 MER61-int 3695 + 1436 1667 133434 106 3 0 33 4 0 92 chain 52939 chr8 146364022 + 64010716 64011496 MER61-int 3695 + 1091 1869 57058 21 7 8 83 0 4 137 2 1 73 20 18 4 1 0 213 14 15 130 1 9 37 20 8 17 chain 25108 chr8 146364022 + 64014815 64015112 AluSp 311 + 11 308 104238 297 chain 28150 chr8 146364022 + 64017191 64017492 AluYa5 310 - 10 310 92461 207 1 0 93 chain 5169 chr8 146364022 + 64018653 64018714 U3 216 + 8 69 193352 61 chain 24676 chr8 146364022 + 64018935 64019238 AluY 311 + 10 303 106574 65 7 0 57 0 1 163 4 0 7 chain 22946 chr8 146364022 + 64029048 64029352 AluSc8 310 + 5 309 115880 127 10 13 155 2 0 5 1 0 4 chain 112012 chr8 146364022 + 64038486 64039840 LTR12C 1709 + 0 1709 33662 332 0 36 202 10 9 220 3 319 99 7 11 481 chain 14034 chr8 146364022 + 64046734 64046958 LTR49-int 1717 - 479 702 144441 8 0 1 4 3 0 142 29 30 38 chain 36289 chr8 146364022 + 64049507 64049942 L1PA6 6164 + 5724 6159 74515 435 chain 6468 chr8 146364022 + 64052592 64052683 LTR49-int 1717 - 1386 1481 181495 35 1 4 9 0 1 46 chain 156558 chr8 146364022 + 64053833 64055618 L1PA5 6144 - 2 1784 23791 7 4 0 329 0 1 1445 chain 48519 chr8 146364022 + 64058206 64059155 HERVH48-int 3304 - 2265 3104 60091 17 1 0 11 1 0 118 28 20 14 1 0 51 5 4 29 7 6 36 15 13 52 3 1 4 1 0 15 4 0 19 1 0 3 8 0 27 45 0 24 0 1 14 3 1 7 1 0 76 19 13 11 6 0 11 1 0 72 1 0 6 6 2 57 31 36 12 13 0 30 2 0 7 4 0 19 chain 27839 chr8 146364022 + 64059421 64059805 MER48 407 - 6 407 93563 194 13 11 24 1 0 4 2 22 110 1 0 5 0 1 30 chain 29447 chr8 146364022 + 64059909 64060355 LTR7B 505 - 14 505 86862 37 14 13 54 0 1 21 1 0 85 0 2 26 37 68 69 0 10 13 0 3 89 chain 254409 chr8 146364022 + 64062367 64065823 HERVH-int 3825 - 0 3721 16009 436 0 3 291 0 3 77 1 0 6 2 0 161 0 1 58 11 0 385 3 4 394 4 6 15 4 39 23 1 2 141 0 1 172 1 0 4 0 1 25 5 0 131 23 14 208 15 0 30 49 52 230 24 24 93 5 273 6 0 1 17 0 2 5 56 45 26 22 21 67 1 0 228 chain 126360 chr8 146364022 + 64074367 64075872 LTR12C 1709 + 2 1709 28990 102 5 4 201 0 1 4 1 0 439 0 2 55 0 200 101 1 0 5 3 1 107 0 4 481 chain 39087 chr8 146364022 + 64077467 64077941 LTR10F 562 + 0 562 70622 144 0 87 172 0 1 158 chain 31059 chr8 146364022 + 64078486 64078861 THE1A-int 1579 + 1183 1573 82419 101 0 14 247 5 6 22 chain 23677 chr8 146364022 + 64078866 64079223 THE1A 353 + 0 353 112169 44 0 1 62 7 6 28 1 0 29 0 1 8 3 2 31 3 2 63 17 15 61 chain 151579 chr8 146364022 + 64091778 64093543 SVA_D 2077 - 0 2073 24389 535 0 225 111 0 1 161 0 1 7 2 3 40 1 0 7 0 83 142 3 0 33 0 3 52 39 0 618 0 37 14 chain 39971 chr8 146364022 + 64136615 64137146 MER41A 554 - 0 544 69365 152 0 9 79 0 1 77 4 5 13 12 14 194 chain 28826 chr8 146364022 + 64140045 64140346 AluYg6 310 + 0 301 89780 301 chain 44190 chr8 146364022 + 64142895 64143452 MLT2A2 560 + 0 560 63957 58 0 1 78 1 0 68 0 1 264 1 3 87 chain 22023 chr8 146364022 + 64144880 64145115 AluYa5 310 - 1 236 120128 235 chain 24850 chr8 146364022 + 64146337 64146693 THE1B 368 - 0 368 105628 75 1 0 25 4 5 90 2 1 4 1 0 25 1 0 84 0 15 44 chain 22077 chr8 146364022 + 64146708 64146980 THE1B-int 1605 - 15 293 119900 67 0 5 112 0 1 93 chain 119367 chr8 146364022 + 64157880 64160413 L1PB1 5432 - 10 2089 31272 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 4 4 2 18 16 6 6 2 0 16 1 0 38 6 5 16 2 1 52 18 12 12 1 0 6 1 0 23 3 0 7 33 28 444 10 11 366 0 1 18 722 300 208 5 7 31 7 12 38 1 0 23 20 19 259 chain 21471 chr8 146364022 + 64163627 64163976 THE1D 372 + 0 372 122252 144 33 50 16 24 29 99 0 1 33 chain 7090 chr8 146364022 + 64165514 64165601 THE1D-int 1627 + 1304 1391 176836 87 chain 4613 chr8 146364022 + 64195385 64195442 HSMAR2 1300 + 1232 1288 199479 44 1 0 12 chain 25115 chr8 146364022 + 64196917 64197275 MER1A 529 + 46 449 104203 34 23 63 156 9 14 136 chain 364139 chr8 146364022 + 64231308 64240908 HERVL-int 5654 + 1164 5654 11255 483 359 0 8 0 2 112 0 1 200 95 0 266 3 0 1807 4672 0 103 5 6 558 0 6 208 2 0 30 0 3 57 1 2 287 0 1 287 0 6 57 chain 3993 chr8 146364022 + 64236215 64236257 HUERS-P2-int 2744 - 1854 1896 207496 42 chain 177907 chr8 146364022 + 64236344 64238750 HUERS-P2-int 2744 + 345 2734 21173 115 1 2 4 1 0 30 7 6 956 21 20 11 13 13 754 6 7 114 1 0 12 4 9 42 1 0 72 2 0 32 5 0 11 1 3 21 2 1 11 1 0 8 22 19 38 8 5 28 21 17 9 2 0 19 chain 110369 chr8 146364022 + 64261504 64263650 L1PB3 3668 - 165 1837 34100 8 1 0 8 22 9 76 21 20 92 2 1 46 2 6 49 0 8 89 0 1 86 4 0 17 25 23 105 0 1 194 1 0 50 15 11 6 0 5 127 11 12 87 0 2 22 0 2 19 9 10 97 5 9 88 14 0 204 466 4 30 0 1 5 1 0 42 chain 28110 chr8 146364022 + 64278032 64279364 LTR8 732 + 0 703 92605 27 2 0 35 3 10 43 5 6 206 11 17 35 166 168 20 724 81 55 chain 48880 chr8 146364022 + 64279908 64280499 LTR10C 591 - 0 591 59823 81 0 2 91 0 1 234 6 3 179 chain 2839 chr8 146364022 + 64281487 64281521 MER4D0 881 + 282 316 228092 34 chain 160677 chr8 146364022 + 64337500 64339432 L1PA7 6471 + 4496 6468 23238 1050 7 51 12 6 5 681 0 1 165 4 0 7 chain 30911 chr8 146364022 + 64341530 64341953 MER57A1 433 - 0 423 82667 140 22 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66028034 THE1D 372 - 206 372 155664 34 0 4 53 9 19 56 chain 26914 chr8 146364022 + 66032445 66032875 LTR10F 562 - 8 501 96582 251 6 5 10 15 22 13 11 4 18 0 3 50 9 65 16 11 16 20 chain 552883 chr8 146364022 + 66032879 66038895 L1PA2 6032 + 6 6032 1080 204 0 1 1636 1 9 1282 0 1 2893 chain 6210 chr8 146364022 + 66038901 66038977 LTR10F 562 - 486 562 183503 76 chain 200930 chr8 146364022 + 66039036 66042360 HERVIP10FH-int 2884 - 8 2735 19150 5 2 0 16 2 0 9 219 41 16 10 4 14 1 0 15 1 0 51 1 0 66 1 0 365 1 0 20 6 5 199 1 0 267 34 22 39 22 10 13 108 72 12 5 2 18 4 0 126 11 6 57 1 0 7 27 20 171 2 0 490 0 1 116 2 0 190 337 24 174 6 0 64 chain 35512 chr8 146364022 + 66045251 66045727 LTR10F 562 - 0 562 75538 285 17 16 20 1 60 14 5 33 134 chain 375694 chr8 146364022 + 66046508 66051419 L1PB1 5432 + 114 5049 10897 23 0 1 142 0 1 35 0 12 77 2 1 7 0 1 42 0 1 86 3 4 54 2 1 5 0 1 9 0 1 143 0 1 119 1 2 4 1 0 508 1 0 7 20 16 174 0 2 10 1 0 270 0 1 160 0 1 151 0 5 183 5 9 110 6 0 154 1 2 192 2 0 94 27 20 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chain 26458 chr8 146364022 + 66493672 66494026 THE1A 353 - 0 353 98213 155 1 0 23 0 1 64 6 5 105 chain 6265 chr8 146364022 + 66504963 66505043 HY3 101 + 3 90 183040 27 0 7 53 chain 10950 chr8 146364022 + 66514466 66514651 L1PA8 5853 + 5661 5853 156398 18 1 0 4 6 5 12 0 1 39 2 1 19 1 0 45 9 19 29 chain 132175 chr8 146364022 + 66528373 66529865 SVA_C 1631 + 13 1625 27598 17 3 28 4 0 1 792 14 15 8 0 1 48 0 91 164 0 1 442 chain 25018 chr8 146364022 + 66541757 66542053 AluSx1 309 + 4 302 104694 59 0 2 237 chain 25494 chr8 146364022 + 66564784 66565119 L1MA3 4352 - 1803 2133 102250 27 8 0 149 0 4 56 1 0 94 chain 33054 chr8 146364022 + 66571494 66572027 LTR10G 522 - 0 522 79131 14 1 0 58 0 2 55 25 13 12 0 6 7 35 20 119 0 9 25 4 5 85 12 5 63 1 7 17 chain 127336 chr8 146364022 + 66574295 66575782 SVA_D 2077 + 0 2077 28732 11 9 2 16 3 7 534 0 3 35 0 153 147 0 439 41 0 1 4 6 5 661 2 0 18 chain 11963 chr8 146364022 + 66585653 66585838 L1PA8 5853 + 5680 5853 152351 9 1 0 37 25 15 19 1 0 93 chain 29759 chr8 146364022 + 66593134 66593446 AluYb8 318 - 6 318 85610 312 chain 3325 chr8 146364022 + 66609582 66609618 tRNA-Tyr-TAC 38 - 1 37 218490 36 chain 21964 chr8 146364022 + 66663772 66664026 AluSp 311 - 57 311 120378 254 chain 27820 chr8 146364022 + 66666253 66666631 MLT2A1 477 - 101 477 93633 99 1 0 17 0 8 82 4 1 29 6 0 140 chain 24036 chr8 146364022 + 66675526 66675811 AluSp 311 + 9 293 110129 17 1 0 267 chain 29572 chr8 146364022 + 66677443 66677752 AluYa5 310 + 1 310 86311 309 chain 20396 chr8 146364022 + 66680513 66680859 THE1B 368 + 0 368 125906 108 6 18 46 1 0 26 0 3 5 42 49 68 8 9 36 chain 83746 chr8 146364022 + 66721768 66722738 L1PA6 6164 + 5185 6161 42017 132 0 3 103 0 3 735 chain 44120 chr8 146364022 + 66770349 66770854 L1PA5 6144 + 5642 6142 64055 167 1 0 326 4 0 7 chain 192173 chr8 146364022 + 66776131 66779401 HERVH48-int 3304 + 100 3152 19852 10 2 0 6 7 3 8 2 0 7 6 2 7 2 0 10 46 38 8 2 0 57 13 0 12 2 1 8 1 0 9 4 10 65 4 0 7 1 0 73 1 0 15 3 0 8 13 7 81 1 0 7 2 3 39 15 0 25 14 5 15 4 0 17 1 0 4 3 1 67 4 6 26 9 8 31 3 2 68 25 17 118 3 0 11 1 0 20 1 0 14 2 0 29 11 6 22 2 0 4 1 0 16 1 0 20 2 0 22 1 0 23 3 0 8 10 4 47 0 1 74 1 0 12 1 0 8 1 0 14 5 1 203 1 0 89 1 0 273 1 0 16 2 1 127 0 1 117 1 0 18 2 0 70 2 1 10 2 1 47 1 0 229 27 24 42 1 0 6 1 0 9 3 1 30 2 0 17 2 0 7 195 150 25 13 5 9 1 0 5 1 0 18 2 0 5 1 0 24 26 24 34 1 0 32 67 51 64 chain 37432 chr8 146364022 + 66786083 66786594 MER41A 554 + 22 554 72921 162 13 14 40 0 1 222 22 41 52 chain 371675 chr8 146364022 + 66802963 66808219 L1PB1 5432 + 77 5313 11034 133 104 105 186 7 8 29 1 0 4 22 30 6 0 1 91 4 9 8 0 1 74 54 53 332 0 1 239 9 13 181 0 1 21 0 1 434 0 1 455 2 0 83 0 5 236 14 9 5 0 2 170 3 4 6 1 0 295 0 1 426 3 0 76 8 9 4 0 1 242 7 12 184 0 1 107 0 1 67 9 7 4 0 1 51 12 8 116 2 0 178 0 2 121 7 10 49 0 1 22 9 0 92 38 12 24 1 0 6 1 0 13 6 2 9 2 0 69 1 0 45 1 0 14 3 0 6 2 1 10 chain 117878 chr8 146364022 + 66815923 66817703 THE1D-int 1627 + 0 1606 31841 15 4 3 39 20 0 341 0 81 180 235 0 108 7 1 9 1 7 635 0 1 186 chain 27697 chr8 146364022 + 66831338 66831868 L1MA2 4263 + 3593 4114 94054 69 1 0 61 0 2 39 9 10 11 31 28 70 80 75 6 0 3 63 0 1 9 0 1 17 7 0 47 1 0 9 chain 3322 chr8 146364022 + 66835911 66835967 MER20 218 + 122 178 218529 31 4 5 5 1 0 15 chain 47492 chr8 146364022 + 66839306 66839910 L1PA8 5853 - 0 598 60845 93 1 0 19 2 1 36 23 22 70 6 4 46 1 0 307 chain 12908 chr8 146364022 + 66844534 66844674 L1PA4 6152 + 6003 6143 148602 140 chain 2942 chr8 146364022 + 66889801 66889834 LTR12C 1709 - 549 582 226306 33 chain 23924 chr8 146364022 + 66891240 66891612 THE1B 368 + 3 368 110788 20 2 1 23 0 1 59 17 18 44 31 24 101 1 0 74 chain 115586 chr8 146364022 + 66891612 66893145 THE1B-int 1605 + 0 1605 32587 41 1 0 7 0 1 359 0 1 17 1 26 51 2 47 226 0 1 296 27 25 135 10 11 181 6 7 173 chain 24395 chr8 146364022 + 66893145 66893509 THE1B 368 + 0 356 108103 13 2 0 34 0 1 57 11 12 52 33 26 98 1 0 63 chain 517558 chr8 146364022 + 66905093 66911156 L1PA5 6144 - 3 6144 5415 332 1 2 420 3 4 84 0 3 799 0 1 61 0 3 52 1 0 179 0 24 272 0 47 173 0 1 405 1 0 25 0 1 941 2 0 65 1 0 1001 4 11 65 9 0 394 22 24 50 0 1 701 chain 182708 chr8 146364022 + 66914301 66916833 Charlie3 2679 + 20 2679 20715 14 1 0 23 1 12 123 30 24 97 0 1 90 0 58 49 0 2 6 6 8 102 0 1 12 5 1 22 0 1 78 1 3 60 9 10 62 1 2 7 0 14 29 2 1 225 5 6 123 0 1 735 10 24 50 0 1 36 33 59 287 0 1 91 0 1 31 14 13 49 0 1 13 chain 37385 chr8 146364022 + 66923396 66924020 L1PA11 4918 + 3965 4567 72979 77 26 27 87 2 0 239 1 0 4 10 8 67 3 1 12 67 52 12 4 3 13 chain 179231 chr8 146364022 + 66936660 66938576 L1HS 6032 - 0 1921 21056 1513 0 5 403 chain 17086 chr8 146364022 + 66967900 66968129 AluSz6 309 + 9 235 135361 37 14 10 46 1 2 131 chain 229401 chr8 146364022 + 66981720 66984439 L1PA7 6471 + 3734 6465 17329 753 0 1 180 0 4 75 1 2 69 0 4 185 8 7 445 0 1 13 0 1 8 0 1 65 1 0 73 1 0 177 1 0 55 0 1 28 0 1 156 1 2 424 chain 28718 chr8 146364022 + 66999648 66999994 THE1D-int 1627 - 5 354 90260 322 0 3 24 chain 5505 chr8 146364022 + 67019401 67019470 MER82 654 - 456 525 189989 69 chain 3556 chr8 146364022 + 67025601 67025638 tRNA-Tyr-TAC 38 + 0 37 214430 37 chain 3556 chr8 146364022 + 67026222 67026259 tRNA-Tyr-TAC 38 + 0 37 214429 37 chain 6415 chr8 146364022 + 67026423 67026496 tRNA-Ala-GCY 73 + 0 73 181911 73 chain 37277 chr8 146364022 + 67034382 67034834 MER4A1 472 + 7 472 73121 127 2 15 323 chain 2940 chr8 146364022 + 67050923 67050957 L1ME5 779 - 159 193 226330 34 chain 192512 chr8 146364022 + 67072259 67074941 L1PB1 5432 - 10 2643 19815 18 1 0 12 1 0 22 1 0 19 0 5 14 1 0 5 3 1 20 16 5 17 1 0 47 1 0 16 2 1 52 2 0 9 18 13 8 1 0 24 33 11 90 9 0 160 0 1 34 0 6 6 3 1 176 5 0 118 0 1 178 10 5 325 1 0 33 6 7 29 0 1 52 0 11 167 1 0 18 7 4 92 0 1 96 0 1 8 0 1 145 11 10 484 2 0 7 0 1 45 chain 75571 chr8 146364022 + 67102910 67103923 MER11A 1151 - 0 1151 45734 163 4 5 46 1 2 13 0 1 59 10 11 9 0 34 118 6 7 144 0 1 92 5 6 51 0 1 4 1 0 44 0 3 43 4 0 64 1 0 76 0 99 55 chain 39003 chr8 146364022 + 67104735 67105288 MLT2A2 560 + 0 560 70741 91 1 2 90 38 33 18 0 1 4 0 1 4 3 1 157 0 11 147 chain 37320 chr8 146364022 + 67107613 67108130 MER11A 1151 - 0 551 73060 163 13 14 53 0 1 31 23 54 148 2 3 84 chain 30286 chr8 146364022 + 67123457 67123831 THE1C 375 - 0 375 83973 26 1 0 91 0 2 256 chain 16295 chr8 146364022 + 67125567 67125784 MER30 238 + 0 238 137490 102 3 27 68 3 0 41 chain 515426 chr8 146364022 + 67140465 67148999 L1PA7 6471 + 6 6454 5625 197 6 4 32 4 5 158 8 1 70 1 0 104 3 0 165 0 5 34 2 1 38 0 1 30 1 0 402 12 31 57 0 1 4 1 0 796 0 1 49 0 4 312 8 13 111 8 0 234 1 0 6 0 3 133 0 3 36 0 1 52 10 14 184 11 9 5 1 0 74 2123 0 69 0 5 37 2 0 1365 0 3 213 6 2 269 0 1 205 0 2 45 0 4 14 2 1 796 1 10 27 chain 158127 chr8 146364022 + 67143863 67145674 SVA_D 2077 + 6 2064 23572 24 6 0 512 0 40 166 18 15 153 7 144 183 0 78 19 0 1 47 0 1 4 9 8 663 chain 71916 chr8 146364022 + 67159423 67162348 MER11A 1151 + 8 1151 47516 77 1945 70 21 8 0 118 4 0 149 0 1 94 0 1 10 1 0 6 0 1 128 0 2 4 1 0 117 0 81 28 0 9 42 2 0 16 0 1 96 1 10 19 3 7 35 chain 48761 chr8 146364022 + 67159500 67160137 MER11A 1151 + 176 1151 59902 118 4 0 32 0 2 43 0 248 65 0 2 4 1 0 117 0 82 27 0 9 42 1 0 12 1 2 170 chain 4007 chr8 146364022 + 67160411 67160460 MER11A 1151 + 9 58 207285 49 chain 50800 chr8 146364022 + 67160461 67161125 MER11A 1151 + 158 1151 58433 20 14 6 110 4 0 30 0 2 45 0 248 65 0 2 4 1 0 117 0 81 28 0 9 42 1 0 16 0 1 167 chain 4740 chr8 146364022 + 67161389 67161444 MER11A 1151 + 0 55 198020 55 chain 10067 chr8 146364022 + 67163980 67164105 MER34B 572 - 60 185 160237 125 chain 37987 chr8 146364022 + 67171284 67171746 LTR2 463 + 0 463 72152 362 22 23 78 chain 88366 chr8 146364022 + 67225290 67226314 LTR5A 1029 - 0 1029 40239 240 0 3 173 12 13 414 0 2 34 1 0 150 chain 384773 chr8 146364022 + 67230047 67234385 L1P1 4361 + 1 4341 10617 1076 1 4 14 0 1 898 1 2 1513 0 1 43 5 2 543 0 1 52 1 0 154 1 0 36 chain 19312 chr8 146364022 + 67239465 67239715 LTR46-int 301 + 58 299 129212 94 1 0 110 1 0 4 9 2 31 chain 3380 chr8 146364022 + 67240169 67240206 LTR46 455 + 418 455 217473 37 chain 4665 chr8 146364022 + 67259803 67259861 MER47A 366 - 0 58 198911 58 chain 40496 chr8 146364022 + 67263457 67263978 MER41C 542 + 0 542 68595 49 0 1 100 1 0 147 12 33 212 chain 13820 chr8 146364022 + 67294093 67294277 MER30 238 + 32 238 145179 73 4 23 68 0 3 39 chain 20027 chr8 146364022 + 67302128 67302376 AluY 311 + 58 305 127049 68 0 1 123 4 0 14 0 2 39 chain 48585 chr8 146364022 + 67308673 67309252 L1PB1 5432 - 683 1259 60046 99 1 0 24 2 0 453 chain 40147 chr8 146364022 + 67309252 67309924 L1PB1 5432 + 4778 5420 69111 14 17 25 48 0 1 237 37 11 24 2 1 7 1 0 12 5 1 8 2 0 52 3 2 16 1 0 59 8 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 29 chain 38899 chr8 146364022 + 67325167 67325849 L1PB1 5432 - 14 668 70866 14 1 0 5 8 7 22 1 0 24 2 0 9 14 11 15 19 9 8 2 0 13 1 0 44 1 0 16 2 1 19 1 0 33 2 0 9 2 0 3 2 0 12 8 6 24 3 0 9 6 7 27 0 1 76 0 3 76 0 1 101 0 1 48 chain 4141 chr8 146364022 + 67329133 67329206 L1MA3 4352 + 4241 4310 205345 19 2 0 19 5 4 5 1 0 22 chain 5295 chr8 146364022 + 67388793 67388856 MLT1A 405 + 0 63 192068 63 chain 3918 chr8 146364022 + 67396810 67396871 MER20 218 + 114 176 208571 42 4 5 15 chain 7010 chr8 146364022 + 67439155 67439293 L1MB2 1706 + 1509 1631 177391 66 27 13 10 1 0 12 3 2 19 chain 216863 chr8 146364022 + 67489100 67491475 L1PA3long 6157 + 3782 6157 18063 1060 2 1 766 0 1 547 chain 5339 chr8 146364022 + 67503031 67503099 L1MA5A 2387 + 2239 2306 191648 56 1 0 11 chain 7759 chr8 146364022 + 67517245 67517517 MER33 330 - 35 312 172550 13 0 7 18 4 0 8 46 50 46 89 87 48 chain 4951 chr8 146364022 + 67533511 67533570 MLT1D 503 - 6 65 195696 59 chain 3153 chr8 146364022 + 67560367 67560402 L1MD2 1676 + 1335 1370 221878 35 chain 12038 chr8 146364022 + 67567535 67567711 MER107 203 - 0 183 152040 32 3 9 38 5 6 98 chain 22353 chr8 146364022 + 67573703 67573975 AluSc8 310 + 15 289 118689 118 0 2 154 chain 23008 chr8 146364022 + 67585421 67585728 AluY 311 + 10 289 115586 121 28 0 158 chain 12028 chr8 146364022 + 67599852 67600141 AluSp 311 - 0 166 152082 46 1 3 87 131 6 24 chain 29699 chr8 146364022 + 67615802 67616112 AluYb8 318 + 0 310 85830 310 chain 26198 chr8 146364022 + 67641424 67641717 AluY 311 + 15 309 99210 117 0 1 176 chain 15640 chr8 146364022 + 67647203 67647425 MER44A 345 + 79 314 139468 22 0 10 54 1 2 14 0 3 43 1 0 87 chain 7719 chr8 146364022 + 67648550 67648643 MER2 342 + 155 248 172798 93 chain 22948 chr8 146364022 + 67651930 67652276 THE1C 375 - 39 375 115873 60 0 1 62 32 27 5 0 2 36 13 5 138 chain 5467 chr8 146364022 + 67673513 67673727 Charlie1a 1436 - 1160 1368 190339 16 39 33 12 2 0 8 57 59 60 3 0 6 1 4 10 chain 17366 chr8 146364022 + 67674268 67674503 AluSq10 312 - 20 312 134609 37 12 19 25 0 50 161 chain 3672 chr8 146364022 + 67697811 67697888 MER20 218 - 138 218 212345 39 8 11 10 1 0 4 3 4 12 chain 4354 chr8 146364022 + 67732624 67732745 L1MB7 1623 - 133 234 202527 12 2 5 22 4 0 7 8 0 7 1 0 4 20 10 34 chain 9811 chr8 146364022 + 67770958 67771134 MER30 238 + 49 238 161537 36 1 0 15 2 0 6 3 0 7 5 19 30 5 12 16 3 0 26 0 1 21 chain 22184 chr8 146364022 + 67805609 67805953 THE1B 368 - 0 368 119429 118 42 52 26 1 0 114 1 16 42 chain 104729 chr8 146364022 + 67819316 67820595 L1PA8 5853 - 5 1286 35563 87 2 1 19 5 10 36 4 1 14 1 0 70 2 0 48 1 0 38 0 3 464 1 0 50 0 4 427 1 0 9 chain 20960 chr8 146364022 + 67821193 67821551 THE1D 372 + 18 372 124066 38 43 35 56 0 1 18 17 3 10 0 1 6 0 16 11 1 2 10 1 0 147 chain 49752 chr8 146364022 + 67824074 67824766 Tigger1 2417 + 1299 2005 59192 104 0 5 69 19 26 28 1 2 284 1 3 167 1 0 18 chain 33058 chr8 146364022 + 67824774 67825173 L1PA7 6471 + 6064 6465 79121 243 11 13 145 chain 3258 chr8 146364022 + 67860782 67860819 U6 107 - 70 107 219796 37 chain 556764 chr8 146364022 + 67861338 67867354 L1PA2 6032 - 0 6031 638 586 1 0 691 0 4 88 0 12 1072 2 0 2661 0 1 47 0 1 868 chain 48661 chr8 146364022 + 67890185 67891539 L1MA5A 2387 - 528 1233 59986 84 3 1 26 659 2 77 0 3 11 1 0 5 17 15 65 12 14 52 0 2 29 0 1 28 0 2 94 0 1 41 0 2 150 chain 20970 chr8 146364022 + 67890298 67890661 THE1B 368 - 0 368 124032 39 25 23 66 0 8 18 0 1 4 43 40 52 8 9 108 chain 7098 chr8 146364022 + 67916478 67916631 MLT1A1 405 + 247 405 176771 24 20 22 30 25 28 54 chain 4177 chr8 146364022 + 67924016 67924063 U2 167 + 6 53 204864 47 chain 25402 chr8 146364022 + 67931472 67931772 AluSg7 307 - 3 307 102676 28 1 3 146 0 1 17 0 1 108 chain 21134 chr8 146364022 + 67931874 67932144 AluY 311 + 29 299 123431 78 0 5 11 1 0 9 0 1 144 7 4 11 2 0 7 chain 24365 chr8 146364022 + 67949239 67949530 AluSp 311 + 0 286 108289 74 5 1 50 1 0 161 chain 36913 chr8 146364022 + 68050944 68051350 L1PA4 6152 - 919 1325 73640 406 chain 78974 chr8 146364022 + 68051350 68052233 L1PA4 6152 + 5259 6146 44072 39 0 4 844 chain 2954 chr8 146364022 + 68055808 68055857 L1ME1 1623 - 1391 1442 226002 10 1 5 5 2 0 31 chain 142372 chr8 146364022 + 68078962 68080587 SVA_C 1631 - 4 1608 25748 583 1 2 145 0 4 14 0 1 8 2 0 5 10 13 815 28 0 14 chain 21437 chr8 146364022 + 68083349 68083641 AluSc 308 + 0 286 122380 18 4 0 109 1 0 4 1 0 10 3 0 6 3 6 133 chain 22748 chr8 146364022 + 68097052 68097352 AluY 311 + 0 295 116835 133 33 28 134 chain 56476 chr8 146364022 + 68100507 68101277 LTR17 781 + 0 781 54864 25 4 0 154 3 2 55 1 0 90 2 1 141 28 25 222 1 23 33 1 0 10 chain 6994 chr8 146364022 + 68117283 68117383 MER30 238 + 0 107 177506 18 11 18 71 chain 6668 chr8 146364022 + 68117583 68117663 MER30B 195 + 115 195 179926 80 chain 23251 chr8 146364022 + 68124328 68124617 AluSp 311 - 23 311 114438 184 6 5 99 chain 18244 chr8 146364022 + 68155855 68156134 L1M1 2793 + 811 1090 132221 20 2 0 8 1 0 53 19 16 45 0 5 45 1 0 56 0 2 29 chain 155278 chr8 146364022 + 68222360 68224490 SVA_F 1814 + 0 1814 23949 479 0 40 364 17 0 42 1 0 4 46 33 148 326 0 71 1 0 483 6 7 127 0 1 15 chain 3039 chr8 146364022 + 68223267 68223313 SVA_F 1814 + 1043 1089 134769 46 chain 22508 chr8 146364022 + 68223489 68223746 SVA_F 1814 + 962 1219 117998 39 1 0 10 1 0 116 0 1 86 0 1 4 chain 111323 chr8 146364022 + 68225428 68227017 L1PBa1 4058 - 2455 4036 33853 396 6 5 19 15 36 62 2 3 58 0 1 82 7 2 308 15 14 50 53 46 32 0 5 53 4 1 125 2 1 139 17 2 16 1 2 90 1 0 6 4 2 10 1 0 15 chain 6247 chr8 146364022 + 68227793 68227869 MER41A 554 - 83 160 183190 34 0 1 42 chain 59674 chr8 146364022 + 68263056 68263701 SVA_D 2077 + 1432 2075 53004 627 2 0 16 chain 528192 chr8 146364022 + 68265177 68271310 L1PA6 6164 - 5 6162 4383 6 1 0 142 1 3 655 4 5 40 2 0 1142 9 1 7 0 8 626 0 1 1309 0 2 1389 1 18 238 1 0 9 0 1 38 0 2 279 0 2 234 chain 48492 chr8 146364022 + 68278577 68279524 MER41B 635 + 0 635 60116 93 1 0 34 1 2 56 312 0 238 1 0 85 1 2 125 chain 21786 chr8 146364022 + 68282033 68282293 AluSc 308 - 15 297 121075 213 0 22 47 chain 24193 chr8 146364022 + 68285344 68285630 AluSg 306 + 11 297 109257 286 chain 26854 chr8 146364022 + 68290244 68290677 LTR7B 505 + 0 505 96792 105 0 10 69 35 11 17 0 88 23 11 12 30 1 0 76 14 13 20 0 1 5 2 0 25 chain 22085 chr8 146364022 + 68297552 68297819 AluY 311 + 30 298 119861 102 0 1 165 chain 7573 chr8 146364022 + 68301104 68301221 MSTA 426 + 295 408 173709 6 7 0 10 3 6 91 chain 10435 chr8 146364022 + 68315154 68315399 L1PB1 5432 - 108 325 158547 16 17 6 6 1 0 16 2 1 43 21 19 49 2 0 9 5 1 14 3 2 8 1 0 19 5 0 8 chain 66478 chr8 146364022 + 68373291 68374040 SVA_D 2077 - 2 968 49882 8 8 0 525 0 225 208 chain 11622 chr8 146364022 + 68381355 68381534 MLT2D 439 + 0 178 153803 38 13 10 30 0 1 13 3 4 82 chain 175013 chr8 146364022 + 68399296 68401336 L1PA6 6164 - 4 2049 21459 223 0 2 229 1 0 165 8 4 214 1 5 41 4 6 923 1 3 230 chain 15946 chr8 146364022 + 68415990 68416229 L1PA8 5853 - 6 243 138529 85 3 2 17 2 1 49 1 0 14 2 1 60 0 2 6 chain 506053 chr8 146364022 + 68446949 68453511 L1PA7 6471 - 2 6245 6460 10 5 0 17 9 8 196 0 6 181 3 8 334 4 0 85 0 5 433 0 1 99 0 9 653 5 7 554 4 5 134 0 1 117 1 0 32 17 25 204 9 10 126 0 1 566 12 1 133 301 0 18 0 1 227 14 15 217 0 1 276 1 0 397 1 0 69 0 2 5 12 8 393 13 16 398 1 2 26 38 0 20 6 5 186 chain 35384 chr8 146364022 + 68453511 68453947 LTR2 463 + 0 463 75685 55 0 3 102 11 31 216 0 4 52 chain 556362 chr8 146364022 + 68502136 68508269 L1PA3long 6157 - 10 6157 689 714 0 1 118 0 4 2045 0 3 1002 0 2 747 1 0 98 0 5 1408 chain 3959 chr8 146364022 + 68518266 68518311 L1PA3long 6157 - 254 299 208001 45 chain 21952 chr8 146364022 + 68518311 68518585 L1PA3long 6157 + 5891 6157 120419 111 0 1 122 14 0 9 0 5 18 chain 3331 chr8 146364022 + 68541024 68541069 MER6 865 - 108 152 218369 16 1 0 28 chain 4510 chr8 146364022 + 68543646 68543760 LTR12C 1709 + 837 1033 200678 48 30 112 14 8 8 14 chain 257060 chr8 146364022 + 68563984 68566868 L1PA4 6152 - 6 2892 15874 261 2 1 159 0 1 422 0 4 427 2 1 235 1 0 552 0 1 428 3 1 144 0 1 248 chain 11580 chr8 146364022 + 68574019 68574210 L1MB3 1562 - 137 326 153978 4 1 0 68 35 34 83 chain 29719 chr8 146364022 + 68593430 68593743 AluYb8 318 - 5 318 85765 313 chain 49633 chr8 146364022 + 68601683 68602366 L1PA16 3655 - 77 757 59290 162 0 2 6 3 1 116 2 0 90 1 0 161 1 0 31 15 17 70 1 0 24 chain 38864 chr8 146364022 + 68632201 68632650 LTR7 482 - 0 482 70926 49 12 14 124 0 31 264 chain 2941 chr8 146364022 + 68645477 68645525 MER5A 189 - 31 81 226313 21 7 9 20 chain 139200 chr8 146364022 + 68666730 68668273 L1P1 4361 - 1679 3222 26226 1543 chain 160481 chr8 146364022 + 68668273 68670098 L1PA4 6152 + 4302 6152 23271 735 1 18 246 2 1 794 0 4 41 0 5 6 chain 48185 chr8 146364022 + 68672705 68673282 L1P2 5180 - 3296 3873 60333 577 chain 79977 chr8 146364022 + 68674218 68675175 L1PA7 6471 + 5504 6466 43608 117 1 0 698 1 2 93 0 5 47 chain 26269 chr8 146364022 + 68709523 68709914 MLT2A1 477 + 0 397 98937 140 1 2 26 12 17 139 2 1 33 7 14 12 7 1 12 chain 4233 chr8 146364022 + 68728836 68728886 MER20 218 + 168 218 204127 50 chain 35321 chr8 146364022 + 68736974 68737438 LTR2B 499 + 8 499 75770 6 1 0 10 0 10 35 3 0 41 0 7 12 0 12 167 0 1 75 5 6 109 chain 17288 chr8 146364022 + 68737438 68737630 MER11C 1089 - 888 1080 134814 192 chain 4598 chr8 146364022 + 68742142 68742211 MADE1 96 - 11 96 199651 35 4 20 30 chain 189059 chr8 146364022 + 68755338 68757810 MER4-int 2692 + 119 2692 20139 39 0 10 186 0 1 14 0 11 132 5 6 34 0 20 59 0 1 259 6 0 28 0 1 96 1 0 26 0 3 272 2 1 38 1 5 139 1 0 256 6 5 102 1 2 6 0 10 38 1 0 31 2 0 52 1 0 78 0 1 38 0 9 146 10 1 9 0 52 338 2 1 17 chain 4258 chr8 146364022 + 68762457 68762509 MLT2B3 573 - 470 522 203777 52 chain 13243 chr8 146364022 + 68795492 68795793 L1PB1 5432 - 24 295 147312 4 1 0 13 1 0 21 1 0 19 27 23 31 14 1 14 2 1 45 2 1 14 2 1 51 2 0 10 2 0 3 2 0 8 2 1 10 chain 32597 chr8 146364022 + 68797247 68797790 MER4B 649 - 77 649 79853 121 73 58 25 9 24 113 0 26 22 0 3 8 12 11 98 0 1 62 chain 14177 chr8 146364022 + 68805764 68806057 THE1B 368 - 64 368 143965 62 1 0 12 1 0 16 0 1 4 5 11 24 8 6 33 25 26 23 32 39 47 chain 546531 chr8 146364022 + 68806178 68812633 L1PA4 6152 + 0 6136 1880 2149 321 0 306 0 1 1830 0 1 472 0 1 1070 1 0 306 chain 28461 chr8 146364022 + 68808336 68808648 AluYb8 318 + 0 307 91332 118 5 0 189 chain 87700 chr8 146364022 + 68834197 68835226 HERV17-int 4347 + 3313 4347 40487 331 0 1 126 9 1 141 1 8 22 0 5 399 chain 29902 chr8 146364022 + 68835540 68835866 LTR17 781 + 0 326 85088 326 chain 4687 chr8 146364022 + 68836422 68836478 MLT1H2 457 - 0 56 198675 56 chain 19311 chr8 146364022 + 68841346 68841562 L1PA4 6152 + 4796 5012 129213 216 chain 102675 chr8 146364022 + 68841562 68842692 L1PA4 6152 + 5013 6143 36081 1130 chain 22086 chr8 146364022 + 68867123 68867409 AluSx1 309 + 28 309 119860 9 1 0 6 0 1 89 1 0 125 7 3 48 chain 5810 chr8 146364022 + 68868743 68868843 MER45B 1037 + 920 1013 187046 35 18 11 47 chain 23111 chr8 146364022 + 68880041 68880319 L1PA5 6144 + 5859 6144 115088 130 1 8 147 chain 20535 chr8 146364022 + 68930430 68930684 AluSp 311 + 10 264 125527 254 chain 4300 chr8 146364022 + 68984370 68984424 MER6C 202 + 147 201 203209 54 chain 22730 chr8 146364022 + 69059556 69059900 THE1B 368 + 0 368 116923 44 5 20 108 5 4 23 34 44 125 chain 29357 chr8 146364022 + 69068735 69069284 MER34C_ 573 - 0 554 87258 45 20 18 76 14 12 39 33 34 31 0 1 4 9 7 24 20 48 122 4 0 82 15 0 11 chain 21140 chr8 146364022 + 69090374 69090841 L1PA11 4918 - 289 732 123411 18 60 44 13 1 0 15 45 31 17 0 2 15 2 0 67 18 15 58 4 0 9 12 22 75 0 4 38 chain 9793 chr8 146364022 + 69104181 69104296 L1PA7 6471 - 7 122 161634 115 chain 9924 chr8 146364022 + 69105555 69105670 L1PA7 6471 - 7 122 160957 115 chain 20893 chr8 146364022 + 69109423 69109802 THE1D 372 + 0 372 124303 52 9 0 15 11 12 88 70 71 134 chain 24227 chr8 146364022 + 69151915 69152260 THE1B 368 - 0 360 109053 76 24 20 97 2 1 77 0 5 33 0 15 36 chain 18673 chr8 146364022 + 69177936 69178298 THE1B 368 - 0 368 131023 25 37 37 63 33 36 6 0 3 22 10 9 53 11 12 102 chain 118966 chr8 146364022 + 69183928 69185269 L1P1 4361 + 2509 3848 31431 171 2 1 496 1 0 671 chain 373199 chr8 146364022 + 69188547 69192865 L1P1 4361 + 4 4328 10982 226 20 21 1196 2 3 458 0 1 340 0 2 254 0 4 1001 1 0 638 1 0 157 1 0 23 chain 12387 chr8 146364022 + 69192916 69193066 L1PA5 6144 + 5996 6144 150680 142 2 0 6 chain 5760 chr8 146364022 + 69212528 69212622 L1MB2 1706 + 1598 1694 187542 13 1 0 55 9 12 16 chain 229293 chr8 146364022 + 69260136 69263549 L1PA14 3548 - 83 3458 17341 10 6 0 41 1 0 12 13 11 13 4 2 35 16 11 98 29 28 46 1 0 21 1 0 6 2 0 5 23 19 80 0 1 4 1 0 17 9 5 47 19 15 250 5 1 151 13 12 234 8 0 224 2 3 86 1 0 164 1 0 5 1 2 153 0 14 136 1 0 13 2 1 37 10 9 21 1 0 5 0 1 237 0 33 41 6 7 144 0 2 5 17 15 309 37 11 8 1 0 305 2 0 31 2 0 27 27 25 68 4 0 58 chain 509622 chr8 146364022 + 69274646 69280146 L1PA2 6032 + 0 6031 6194 96 0 524 77 0 7 5327 chain 22288 chr8 146364022 + 69284845 69285098 L1PA7 6471 - 8 261 118956 253 chain 30012 chr8 146364022 + 69293685 69293997 AluYb8 318 + 0 312 84766 312 chain 41386 chr8 146364022 + 69306325 69306780 L1PA3long 6157 - 0 455 67426 455 chain 148706 chr8 146364022 + 69315630 69317378 L1PA7 6471 - 10 1776 24790 323 0 1 261 0 8 258 1 2 514 4 5 110 0 9 15 2 0 260 chain 4187 chr8 146364022 + 69320956 69321009 Tigger3b 1229 + 133 193 204746 6 0 7 47 chain 81306 chr8 146364022 + 69329942 69330826 L1PA3long 6157 - 1413 2297 42900 884 chain 127900 chr8 146364022 + 69330826 69332223 L1PA3long 6157 + 4756 6157 28597 554 0 4 843 chain 21665 chr8 146364022 + 69336872 69337129 AluY 311 + 19 277 121520 113 0 1 144 chain 31042 chr8 146364022 + 69346375 69346836 L1PA8 5853 - 0 451 82450 93 1 0 16 14 8 41 21 17 70 2 0 35 10 9 72 0 4 86 chain 5303 chr8 146364022 + 69353425 69353529 MLT1E1A 663 - 130 223 191997 13 2 1 38 21 11 30 chain 553801 chr8 146364022 + 69372041 69378175 L1PA3long 6157 + 5 6136 974 1143 1 2 98 0 1 851 0 1 1117 0 1 1173 10 3 1741 chain 65661 chr8 146364022 + 69389862 69390772 THE1D-int 1627 - 584 1610 50268 8 0 2 216 6 16 81 7 6 25 0 1 185 1 0 8 4 5 42 4 106 31 9 16 58 5 0 220 chain 121101 chr8 146364022 + 69392671 69394223 THE1A-int 1579 + 16 1573 30668 413 13 11 258 3 12 18 0 9 179 15 16 17 0 1 204 1 2 205 14 0 212 chain 13887 chr8 146364022 + 69411345 69411517 L1PA16 3655 - 86 258 144961 172 chain 29136 chr8 146364022 + 69417684 69417995 AluYb8 318 + 0 311 88386 311 chain 260579 chr8 146364022 + 69421313 69425571 MER61-int 3695 - 0 3692 15664 101 2 0 41 0 1 122 1 3 65 10 8 119 0 1 6 10 9 54 1 2 11 2 1 67 1 0 186 78 77 56 1 0 93 0 1 47 0 1 141 0 1 60 0 1 31 0 1 252 1 0 139 3 1 23 13 14 11 11 10 305 567 0 279 7 10 330 1 0 64 0 1 96 10 8 115 13 95 76 7 8 82 18 0 57 15 1 79 9 6 54 1 0 16 0 1 57 40 0 143 1 0 7 1 0 18 4 0 27 chain 38660 chr8 146364022 + 69423407 69423943 LTR10A 586 - 21 586 71213 237 18 17 94 1 30 49 2 1 24 0 1 37 5 6 69 chain 24482 chr8 146364022 + 69439530 69439827 AluY 311 + 0 303 107637 28 6 11 93 0 1 170 chain 24488 chr8 146364022 + 69478661 69479055 Tigger1 2417 - 1452 1837 107616 165 11 27 23 0 1 4 37 10 82 6 7 66 chain 50322 chr8 146364022 + 69479057 69479809 L1PB 1623 - 764 1525 58770 213 0 1 32 4 7 29 1 0 85 8 7 74 1 0 12 2 1 58 0 6 60 2 0 5 0 1 64 5 0 6 4 7 4 1 0 16 11 8 28 0 4 14 0 7 8 1 0 4 chain 22481 chr8 146364022 + 69514556 69514882 THE1C 375 - 39 373 118105 47 6 15 68 23 20 5 0 2 177 chain 426809 chr8 146364022 + 69525531 69530238 L1PA3long 6157 - 0 4721 9376 7 0 1 134 0 1 13 0 3 632 0 1 447 0 1 1835 0 1 490 0 2 381 0 2 21 0 1 84 0 1 663 chain 28460 chr8 146364022 + 69562712 69563013 AluYa5 310 - 9 310 91337 301 chain 19824 chr8 146364022 + 69589325 69589594 L1MA3 4352 + 900 1168 127734 155 0 1 21 11 10 23 1 0 58 chain 79800 chr8 146364022 + 69592579 69593658 MER11A 1151 - 15 1151 43684 152 0 1 16 1 0 30 1 2 14 0 1 36 18 0 22 44 27 150 0 1 145 0 1 92 10 11 141 4 0 116 8 0 24 0 99 55 chain 29452 chr8 146364022 + 69600173 69600625 L1PB2 3958 + 3371 3838 86829 62 10 8 10 1 0 94 1 0 45 1 3 25 1 9 31 16 26 91 1 0 63 chain 124635 chr8 146364022 + 69639173 69640734 THE1A-int 1579 - 0 1579 29498 53 4 1 540 0 1 4 1 0 167 8 11 137 0 13 15 1 0 57 0 7 112 1 0 461 chain 542939 chr8 146364022 + 69655588 69661632 L1PA3long 6157 + 0 6157 2352 144 4 0 10 13 0 622 0 128 1016 0 1 4 2 1 1168 0 1 155 0 1 2906 chain 25361 chr8 146364022 + 69668014 69668331 AluY 311 + 0 308 102878 97 0 1 28 6 0 150 5 6 8 5 0 18 chain 3846 chr8 146364022 + 69692186 69692238 LTR37A 408 - 51 104 209704 22 0 1 30 chain 25627 chr8 146364022 + 69704537 69704831 AluSc8 310 + 12 309 101599 120 0 3 174 chain 4990 chr8 146364022 + 69763069 69763139 LTR12C 1709 - 641 722 195250 35 4 15 31 chain 25569 chr8 146364022 + 69770198 69770549 THE1A 353 - 2 353 101880 109 16 17 115 2 1 109 chain 8268 chr8 146364022 + 69784489 69784947 MLT1E3 631 + 67 475 169577 61 34 40 50 231 225 17 50 0 15 chain 39991 chr8 146364022 + 69800912 69801406 MER9a3 513 + 0 505 69332 17 0 3 69 0 2 19 0 1 60 1 0 6 0 1 132 1 5 120 0 1 69 chain 376591 chr8 146364022 + 69802711 69807358 HERVK9-int 4720 + 36 4720 10861 13 8 5 4 1 0 66 1 0 7 1 0 31 13 12 281 0 3 159 1 2 64 0 1 276 0 1 319 0 4 297 1 0 5 1 3 31 0 1 984 0 1 8 7 88 310 15 17 57 0 1 209 5 4 9 2 0 470 64 3 47 0 1 275 3 4 226 0 8 324 0 1 52 chain 40453 chr8 146364022 + 69807362 69807862 MER9a3 513 + 4 513 68661 14 0 2 54 0 2 34 0 1 66 0 1 52 0 2 203 0 1 77 chain 26452 chr8 146364022 + 69817270 69817626 THE1B 368 + 0 360 98226 15 2 0 22 0 5 130 2 1 8 1 3 176 chain 72892 chr8 146364022 + 69848372 69849188 L1PA4 6152 + 5334 6148 47073 484 2 0 330 chain 12696 chr8 146364022 + 69862334 69862512 MER30 238 - 0 198 149461 107 11 31 60 chain 12827 chr8 146364022 + 69864874 69865058 MER30 238 - 0 200 148946 39 3 0 68 9 28 65 chain 21826 chr8 146364022 + 69870277 69870675 L1PA14 3548 - 92 474 120477 34 0 1 7 1 0 17 1 0 4 1 0 15 4 2 26 22 18 87 25 24 84 1 0 6 2 0 13 8 4 40 chain 35263 chr8 146364022 + 69870675 69871190 L1PREC2 3366 + 2344 2850 75843 105 8 7 59 3 0 70 3 2 124 4 0 25 0 1 9 0 1 5 2 0 14 0 1 32 8 7 44 chain 79272 chr8 146364022 + 69880329 69881306 L1P3 4156 + 3115 4131 43926 385 0 13 158 0 24 120 0 5 185 1 0 102 2 0 7 2 1 8 0 1 7 chain 39648 chr8 146364022 + 69885178 69885664 LTR7 482 + 0 482 69825 53 35 0 193 0 31 205 chain 293918 chr8 146364022 + 69885666 69889441 HERVH-int 3825 + 0 3825 13772 211 0 11 310 5 0 38 1 0 10 1 0 24 1 14 13 3 0 25 1 0 42 171 1 12 23 2 16 2 1 49 1 0 93 1 0 357 16 1 173 0 1 37 0 1 108 5 4 127 8 35 209 0 1 1144 9 11 39 8 218 254 3 8 225 chain 3114 chr8 146364022 + 69886461 69886520 HERVH-int 3825 + 604 698 222675 15 1 0 11 4 1 13 0 39 15 chain 38286 chr8 146364022 + 69890549 69891004 LTR7 482 + 0 482 71730 56 5 1 206 1 32 187 chain 21388 chr8 146364022 + 69912111 69912357 LTR12D 1347 + 1101 1347 122554 246 chain 541931 chr8 146364022 + 69931241 69937374 L1PA3long 6157 + 0 6156 2518 153 0 1 210 0 1 350 1 0 51 11 139 1458 109 0 3460 0 1 325 0 2 5 chain 5307 chr8 146364022 + 69941928 69941994 MLT1C 463 + 397 463 191941 66 chain 178354 chr8 146364022 + 69948380 69950385 L1PA5 6144 - 3 2009 21130 6 4 0 44 0 2 92 0 1 1516 0 2 343 chain 4128 chr8 146364022 + 69969806 69969854 MLT1E2 623 + 562 610 205544 48 chain 22503 chr8 146364022 + 70002046 70002363 Tigger3b 1229 - 31 346 118016 60 2 0 16 11 9 163 4 5 4 0 1 57 chain 59490 chr8 146364022 + 70003701 70004429 L1PA7 6471 - 7 739 53116 21 1 0 4 0 1 127 2 3 97 0 3 77 1 0 219 1 2 178 chain 26327 chr8 146364022 + 70020343 70020811 L1PA15 4387 - 21 473 98713 11 1 0 27 24 17 41 17 14 38 26 21 12 1 0 55 1 0 26 1 0 156 0 4 9 6 5 16 chain 187875 chr8 146364022 + 70038041 70040224 L1P1 4361 + 2163 4341 20252 878 11 10 114 0 1 517 2 0 467 1 0 155 1 0 23 2 1 12 chain 29722 chr8 146364022 + 70044260 70044625 L1PA5 6144 + 5761 6125 85753 52 1 0 312 chain 24584 chr8 146364022 + 70044666 70044976 THE1A 353 - 44 353 107065 199 1 0 110 chain 30053 chr8 146364022 + 70046491 70046852 THE1A-int 1579 - 1223 1579 84638 72 0 2 34 7 0 248 chain 15752 chr8 146364022 + 70051355 70051669 L1PB1 5432 - 23 310 139106 5 1 0 13 1 0 21 1 0 24 2 0 14 8 5 15 8 0 16 3 0 16 6 5 38 1 0 16 2 1 53 2 0 9 23 20 16 chain 156636 chr8 146364022 + 70051678 70053799 L1PBa1 4058 - 1775 3960 23781 89 0 77 51 8 0 86 1 0 313 1 0 216 1 0 111 1 0 4 13 14 99 19 17 60 19 18 25 8 0 127 0 1 308 12 11 86 6 7 103 0 1 30 2 0 9 6 15 43 0 1 188 5 4 71 chain 18812 chr8 146364022 + 70062181 70062397 L1PA5 6144 + 5922 6138 130639 216 chain 20595 chr8 146364022 + 70118552 70118848 THE1C 375 + 40 345 125315 109 35 46 9 4 2 139 chain 328531 chr8 146364022 + 70127275 70131687 L1PA11 4918 + 57 4475 12255 21 2 0 35 1 0 17 2 0 50 1 0 30 14 16 106 20 19 81 0 2 449 0 1 90 3 1 241 6 8 125 2 0 186 0 1 98 0 1 178 4 1 377 0 1 21 2 0 12 7 8 10 0 5 48 7 6 62 0 1 176 7 0 167 5 0 170 1 5 176 0 3 567 6 14 5 0 3 44 5 8 375 0 1 31 0 1 216 1 0 4 8 7 55 19 16 66 chain 33220 chr8 146364022 + 70134520 70134894 L1PA3long 6157 - 0 377 78851 287 0 3 87 chain 162630 chr8 146364022 + 70157208 70159109 SVA_D 2077 + 0 2077 22986 13 5 0 12 5 0 132 1 2 393 0 1 212 0 1 134 3 0 18 0 36 72 0 100 65 49 0 112 0 98 423 0 1 252 chain 4472 chr8 146364022 + 70158273 70158322 SVA_D 2077 + 1318 1416 95914 39 0 49 10 chain 552486 chr8 146364022 + 70166454 70172484 L1PA2 6032 + 2 6031 1132 253 2 1 5775 chain 530261 chr8 146364022 + 70192137 70198597 L1PA7 6471 + 0 6464 4154 409 0 3 206 0 3 37 1 2 184 0 7 7 8 1 351 0 4 23 0 4 76 0 4 235 1 0 34 0 1 539 0 2 123 0 9 375 1 2 462 0 2 249 3 0 89 0 1 59 0 1 503 1 0 978 1 0 56 4 0 163 0 1 416 1 0 55 14 24 232 31 0 376 6 0 6 1 0 4 1 10 131 3 0 5 chain 3603 chr8 146364022 + 70216484 70216529 MER63A 208 - 82 127 213605 45 chain 4319 chr8 146364022 + 70225850 70225900 Tigger7 736 + 101 151 202983 50 chain 55746 chr8 146364022 + 70233082 70233814 L1PB 1623 + 584 1301 55274 7 13 0 4 1 0 333 1 0 373 chain 23582 chr8 146364022 + 70245154 70245449 AluY 311 + 13 304 112677 112 2 1 7 3 0 171 chain 23577 chr8 146364022 + 70252363 70252722 THE1B 368 + 0 368 112701 172 1 0 26 4 2 14 0 4 10 7 15 33 24 23 57 1 2 10 chain 47095 chr8 146364022 + 70259616 70260145 L1PA3long 6157 - 8 537 61129 529 chain 542183 chr8 146364022 + 70263620 70269663 L1PA3long 6157 - 1 6153 2474 148 0 1 1612 10 3 1090 0 1 2397 4 132 455 1 0 73 0 4 86 8 0 3 9 0 147 chain 26576 chr8 146364022 + 70292489 70292829 LTR2 463 - 0 341 97737 88 15 16 237 chain 309782 chr8 146364022 + 70294390 70299094 L1PA11 4918 + 22 4475 13010 20 11 9 27 4 1 34 1 0 13 0 1 53 1 0 33 2 0 5 2 1 89 26 27 132 2 1 172 0 2 108 8 7 303 8 10 16 0 8 99 1 48 87 0 3 73 7 5 141 0 1 10 1 0 6 3 5 30 1 5 202 28 25 9 0 1 25 2 0 339 1 0 91 4 26 143 15 14 65 1 0 44 0 40 71 0 2 5 6 0 253 0 1 139 369 0 309 7 8 246 1 0 72 16 18 247 0 1 153 12 19 43 11 12 87 0 1 7 1 0 19 1 2 47 2 1 11 2 1 69 chain 20122 chr8 146364022 + 70345405 70345667 L1PA8 5853 + 5591 5847 126762 17 2 0 74 1 0 9 1 0 49 2 1 19 1 0 87 chain 29157 chr8 146364022 + 70357624 70357927 AluYa5 310 - 7 310 88270 303 chain 22501 chr8 146364022 + 70393035 70393282 L1PA3long 6157 + 5909 6157 118024 93 0 1 154 chain 21405 chr8 146364022 + 70416074 70416328 AluSc 308 - 50 304 122488 254 chain 17284 chr8 146364022 + 70450199 70450412 AluYf5 307 - 13 224 134825 30 6 4 177 chain 3565 chr8 146364022 + 70463988 70464038 MER5A 189 + 26 70 214218 6 6 0 38 chain 24602 chr8 146364022 + 70466939 70467243 AluY 311 + 7 311 106983 120 1 2 173 1 0 9 chain 73999 chr8 146364022 + 70524461 70525570 L1PB2 3958 - 120 1200 46512 40 1 0 23 2 1 21 2 0 72 1 0 48 16 15 39 1 2 28 8 5 93 2 0 12 2 0 34 33 28 16 1 0 11 1 0 43 2 0 98 16 15 268 3 2 43 0 3 95 9 0 25 chain 136930 chr8 146364022 + 70537622 70539264 LTR12C 1709 - 0 1703 26657 195 0 1 285 0 4 105 2 0 8 1 0 119 7 9 69 0 2 35 0 40 166 1 3 231 0 1 79 2 14 337 chain 17394 chr8 146364022 + 70543056 70543254 L1PA4 6152 - 1 200 134527 4 0 1 194 chain 10308 chr8 146364022 + 70545901 70546034 L1PA7 6471 - 1 136 159095 127 0 2 6 chain 11148 chr8 146364022 + 70548323 70548484 HSMAR1 1287 - 0 162 155645 101 19 20 41 chain 20875 chr8 146364022 + 70556756 70557018 AluY 311 + 28 305 124378 100 9 0 22 0 24 131 chain 21978 chr8 146364022 + 70559865 70560133 AluSp 311 + 11 288 120325 55 1 10 212 chain 96425 chr8 146364022 + 70576719 70577782 L1PA4 6152 + 5080 6143 37697 1063 chain 50494 chr8 146364022 + 70590306 70590933 PABL_A 660 + 25 660 58654 56 0 9 525 10 9 36 chain 153285 chr8 146364022 + 70600573 70602247 L1PA3long 6157 - 0 1673 24189 259 1 0 1414 chain 8687 chr8 146364022 + 70603821 70603935 L1MB1 2102 - 105 217 167265 55 2 0 57 chain 40271 chr8 146364022 + 70631690 70632213 HERV1_LTRd 520 + 0 517 68914 54 1 0 4 11 6 295 7 2 34 0 5 117 chain 6310 chr8 146364022 + 70633271 70633347 MLT1J 494 + 96 173 182714 47 0 1 29 chain 25256 chr8 146364022 + 70641408 70641707 AluYk4 311 + 11 307 103445 268 4 1 27 chain 4351 chr8 146364022 + 70643534 70643599 MADE1 96 + 15 96 202572 27 5 21 33 chain 23659 chr8 146364022 + 70693880 70694191 AluSp 311 - 0 311 112255 159 19 19 133 chain 14089 chr8 146364022 + 70694275 70694466 L1PA8 5853 + 5666 5853 144263 13 1 0 9 1 0 56 2 1 15 1 0 93 chain 93417 chr8 146364022 + 70709288 70710365 MER11C 1089 + 0 1073 38531 563 11 5 424 1 3 78 chain 9710 chr8 146364022 + 70710404 70710523 MSTA-int 1630 - 1511 1630 162040 119 chain 20703 chr8 146364022 + 70711808 70712139 THE1C 375 - 34 375 124960 188 7 11 24 48 54 64 chain 13525 chr8 146364022 + 70719144 70719313 L1PREC2 3366 + 2638 2806 146266 9 0 1 103 5 3 52 chain 371831 chr8 146364022 + 70735419 70739536 L1PA3long 6157 + 2055 6151 11029 205 4 0 1871 1 0 1421 16 0 599 chain 3784 chr8 146364022 + 70752788 70752831 MER21A 919 - 803 846 210613 43 chain 533566 chr8 146364022 + 70755541 70761658 L1PA5 6144 + 0 6139 3757 285 0 1 1123 0 5 9 0 9 618 1 0 259 1 0 6 0 1 1193 1 0 421 0 1 413 0 4 443 3 4 47 0 1 1185 0 1 22 0 1 87 chain 78120 chr8 146364022 + 70767848 70768792 SVA_A 1864 + 733 1864 44449 145 2 1 6 1 0 65 2 0 74 2 0 72 38 231 537 chain 392468 chr8 146364022 + 70774222 70779218 L1PA6 6164 + 1467 6162 10378 746 0 2 119 10 7 84 6 22 108 0 1 186 331 15 1089 7 8 118 0 1 206 0 1 75 3 4 183 1 0 55 0 1 81 7 0 284 0 1 272 0 1 197 4 3 665 1 9 9 7 0 142 chain 10543 chr8 146364022 + 70790608 70791012 L1MB7 1623 - 194 553 158067 7 1 0 44 51 46 9 1 0 13 22 19 6 1 0 17 113 83 41 26 22 52 chain 7955 chr8 146364022 + 70791014 70791106 L1P1 4361 + 4237 4328 171305 68 1 0 23 chain 25181 chr8 146364022 + 70794701 70794991 AluY 311 + 15 306 103838 117 0 1 173 chain 3047 chr8 146364022 + 70795784 70795816 U2 167 + 0 32 224046 32 chain 523404 chr8 146364022 + 70819494 70825924 L1PA6 6164 + 0 6162 4823 467 1 0 960 7 5 5 0 2 7 1 0 94 1 2 167 12 0 565 0 2 93 141 0 6 109 0 207 0 4 257 0 1 51 14 1 287 1 0 6 0 1 513 1 0 1160 0 1 399 1 0 45 0 1 676 7 8 169 chain 11727 chr8 146364022 + 70821888 70822015 L1PA6 6164 - 5031 5158 120694 127 chain 9603 chr8 146364022 + 70822021 70822125 L1PA6 6164 - 5164 5268 120694 104 chain 9721 chr8 146364022 + 70832854 70832984 MSTA 426 + 264 414 161978 32 1 21 75 1 0 4 0 1 17 chain 12854 chr8 146364022 + 70840671 70840892 Tigger3b 1229 + 51 291 148824 35 29 45 19 1 0 42 5 0 6 0 8 20 0 1 64 chain 20405 chr8 146364022 + 70841247 70842128 Tigger3 1187 + 344 739 125879 39 7 3 30 18 10 19 0 2 63 0 4 23 1 0 22 0 4 12 1 0 26 1 0 1 144 0 20 2 1 25 387 51 40 chain 11383 chr8 146364022 + 70858030 70858328 AluSp 311 + 135 304 154769 32 136 8 54 2 1 74 chain 6859 chr8 146364022 + 70879657 70879736 Tigger1 2417 + 38 117 178512 79 chain 23634 chr8 146364022 + 70917066 70917369 AluY 311 + 0 295 112393 20 1 9 258 16 0 8 chain 21932 chr8 146364022 + 70941103 70941378 THE1B 368 - 81 368 120489 95 2 0 23 1 0 110 0 15 44 chain 26361 chr8 146364022 + 70950041 70950342 AluSp 311 + 9 310 98566 301 chain 4991 chr8 146364022 + 70975002 70975057 Tigger4b 360 - 166 221 195238 55 chain 3146 chr8 146364022 + 70977948 70978019 MER112 246 - 96 170 222060 25 14 19 21 2 0 9 chain 21294 chr8 146364022 + 71018649 71018947 AluSp 311 + 10 301 122881 34 27 20 237 chain 24468 chr8 146364022 + 71041912 71042204 AluSp 311 - 18 311 107713 78 1 2 213 chain 3813 chr8 146364022 + 71067037 71067109 L1MA8 2339 + 2122 2192 210184 25 20 18 27 chain 6017 chr8 146364022 + 71071294 71071394 MER2B 336 - 48 149 185075 31 18 19 51 chain 18649 chr8 146364022 + 71112128 71112463 MER2 342 + 0 327 131089 66 54 50 59 15 10 110 2 3 29 chain 13978 chr8 146364022 + 71158830 71159042 L1MB2 1706 - 12 213 144657 83 1 0 13 1 0 16 14 5 84 chain 71259 chr8 146364022 + 71173030 71173821 L1PA3long 6157 + 5340 6142 47825 483 0 1 162 0 10 146 chain 6342 chr8 146364022 + 71233224 71233343 MER34B-int 733 + 354 474 182454 47 6 7 9 1 0 26 13 14 17 chain 209034 chr8 146364022 + 71249919 71252762 L1PA11 4918 + 1753 4578 18566 17 0 1 32 8 11 108 0 1 29 3 7 64 0 2 177 1 0 5 3 1 84 3 1 61 0 1 4 0 4 39 8 7 151 0 2 155 1 2 119 21 9 218 0 15 253 0 3 330 7 3 191 9 6 387 1 0 4 3 4 71 13 8 53 2 1 13 2 0 54 4 0 14 2 0 13 1 0 19 50 38 9 1 0 13 2 0 11 chain 8235 chr8 146364022 + 71269581 71269681 HY3 101 + 0 100 169749 100 chain 24367 chr8 146364022 + 71301518 71301804 AluSp 311 - 15 301 108277 286 chain 29649 chr8 146364022 + 71347378 71347687 AluYk12 309 + 0 309 86068 309 chain 483442 chr8 146364022 + 71372484 71378404 L1PA6 6164 - 10 6164 7613 65 0 9 335 0 1 427 1 5 25 0 1 626 1 4 659 2 1 26 0 9 474 7 164 6 0 1 45 0 1 45 0 1 536 0 2 64 0 1 428 0 2 1111 7 6 262 0 65 173 8 7 117 19 0 89 1 0 361 chain 21359 chr8 146364022 + 71383429 71383693 AluSc 308 + 3 265 122654 147 2 0 115 chain 3607 chr8 146364022 + 71384478 71384517 LTR12C 1709 - 0 39 213528 39 chain 5481 chr8 146364022 + 71384900 71385001 MER57-int 2662 + 2343 2424 190217 28 28 8 45 chain 131786 chr8 146364022 + 71401123 71402602 L1PA4 6152 - 1 1483 27675 796 0 3 683 chain 71450 chr8 146364022 + 71419780 71420572 L1PA4 6152 - 9 801 47724 792 chain 21640 chr8 146364022 + 71423265 71423517 L1PA4 6152 - 1 254 121615 4 0 1 248 chain 133021 chr8 146364022 + 71424004 71425579 THE1A-int 1579 + 0 1577 27415 259 0 1 1010 1 2 305 chain 28705 chr8 146364022 + 71425581 71425934 THE1A 353 + 0 353 90313 84 0 1 25 1 0 243 chain 28856 chr8 146364022 + 71472079 71472386 AluYb8 318 + 0 307 89641 307 chain 271605 chr8 146364022 + 71479468 71483288 L1PB2 3958 + 17 3838 15109 8 6 0 23 23 18 18 5 0 20 9 4 31 2 0 32 1 0 4 9 3 10 4 20 20 4 1 130 0 1 78 0 2 32 0 2 197 0 1 35 4 8 41 0 1 8 4 0 8 16 5 264 1 0 100 0 1 108 37 37 16 0 3 38 0 7 227 1 0 371 0 2 45 0 1 212 0 1 145 0 1 34 0 1 89 16 10 242 9 8 78 0 8 73 1 0 24 1 0 280 0 1 63 0 3 38 2 0 33 12 13 8 1 0 8 1 0 7 1 4 51 7 5 13 2 0 94 0 4 16 0 6 6 8 3 7 0 2 28 1 0 48 0 6 10 1 0 72 2 0 21 2 1 63 chain 185203 chr8 146364022 + 71496601 71498667 L1PA4 6152 + 4072 6151 20479 279 0 4 520 0 4 284 0 1 140 0 4 153 1 0 540 0 1 149 chain 447845 chr8 146364022 + 71538919 71544259 L1PA6 6164 - 8 6164 8818 142 5 0 6 1 6 45 7 8 633 0 4 16 0 4 596 0 1 40 0 5 284 0 4 41 2 1 1133 0 1 584 16 20 185 5 794 155 0 2 539 0 4 68 11 28 13 17 0 21 1 0 180 6 4 22 1 0 47 0 2 518 chain 64078 chr8 146364022 + 71557742 71558454 L1PA4 6152 - 11 724 50977 137 0 1 575 chain 23082 chr8 146364022 + 71558454 71558722 L1PA4 6152 + 5156 5430 115228 142 0 4 13 0 1 30 0 1 83 chain 116963 chr8 146364022 + 71567140 71569080 L1PB1 5432 - 8 1619 32140 4 1 0 16 1 0 9 0 3 22 1 0 16 10 8 14 1 0 4 3 1 16 9 0 15 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 333 11 9 1 0 24 1 0 11 1 0 251 1 0 145 0 2 39 0 8 36 8 13 200 0 1 139 3 4 156 6 7 110 0 1 178 chain 44063 chr8 146364022 + 71583567 71584035 L1HS 6032 - 0 468 64144 468 chain 9997 chr8 146364022 + 71584035 71584151 L1P1 4361 + 4213 4328 160592 92 1 0 23 chain 81332 chr8 146364022 + 71596841 71598131 L1PA3long 6157 + 5258 6157 43030 639 389 0 255 2 0 5 chain 89790 chr8 146364022 + 71603601 71605350 L1PA14 3548 - 92 1492 39726 41 1 0 17 1 0 5 1 0 16 4 2 32 16 11 23 17 16 71 2 1 56 4 3 25 1 0 8 2 0 8 9 5 15 0 1 91 12 8 48 2 0 11 7 4 11 0 1 110 10 13 7 0 1 112 9 1 47 0 3 7 9 6 83 1 0 87 7 5 151 316 0 194 9 10 33 chain 557836 chr8 146364022 + 71607414 71613566 L1PA3long 6157 - 0 6151 520 785 4 0 3052 0 1 132 0 2 898 0 1 921 1 0 359 chain 42508 chr8 146364022 + 71622986 71623731 L1PA15 4387 + 3639 4366 66004 16 0 1 117 18 19 21 5 6 8 4 0 62 6 7 15 8 11 10 1 0 122 2 0 48 1 0 29 1 0 51 23 19 16 1 0 39 20 17 41 3 1 12 6 1 28 1 0 10 chain 451663 chr8 146364022 + 71630553 71636452 L1PA8 5853 - 0 5803 8713 83 11 10 19 2 1 29 2 3 12 5 4 13 4 3 68 2 0 46 1 0 175 0 2 110 0 3 205 0 4 54 0 3 18 0 4 358 0 1 46 0 9 92 0 2 111 2 3 64 7 1 82 1 0 266 0 1 558 3 0 46 0 1 31 0 1 429 1 0 607 0 4 17 1 2 225 5 1 64 10 15 403 0 1 189 0 1 88 19 18 418 12 6 187 6 0 26 1 0 301 0 4 20 106 36 141 56 20 6 1 0 10 2 0 22 chain 514616 chr8 146364022 + 71647715 71653408 L1PA3long 6157 - 15 5710 5715 770 4 0 71 0 1 2748 0 2 224 0 1 1236 0 3 46 1 0 329 0 1 87 1 0 176 chain 3052 chr8 146364022 + 71658513 71658551 MER5A 189 - 1 39 223960 38 chain 6691 chr8 146364022 + 71658925 71659007 MSTC 436 + 0 82 179747 82 chain 288236 chr8 146364022 + 71664948 71668153 L1PA3long 6157 + 2940 6155 14148 325 0 2 942 0 1 216 0 1 369 0 2 512 0 4 16 0 1 684 1 0 140 chain 506165 chr8 146364022 + 71676837 71683594 L1PA7 6471 - 10 6460 6455 329 1 0 430 0 2 51 0 1 19 4 16 10 13 17 83 39 2 22 0 5 266 1 0 115 5 7 34 0 1 56 1 0 319 0 6 10 0 1 51 0 2 27 0 1 7 1 0 523 3 2 44 1 0 395 0 1 23 326 0 112 0 1 79 0 1 56 0 2 248 0 1 215 0 1 38 15 8 19 0 1 142 0 1 26 11 6 105 0 2 355 9 1 1164 0 29 15 2 3 379 0 1 28 0 1 486 8 10 36 chain 257035 chr8 146364022 + 71689207 71692326 L1PA6 6164 - 12 3139 15876 141 0 1 612 1 0 78 0 5 381 0 7 271 8 7 725 15 10 19 4 7 190 3 0 397 0 1 110 0 1 4 1 0 139 1 2 19 chain 6136 chr8 146364022 + 71693154 71693227 HY4 93 - 4 77 184109 73 chain 535711 chr8 146364022 + 71720557 71726688 L1PA4 6152 + 12 6151 3487 425 0 1 678 4 5 332 0 4 777 0 1 2797 0 2 315 1 0 580 0 1 204 1 0 17 chain 309343 chr8 146364022 + 71760856 71765243 L1PA7 6471 + 2486 6468 13029 34 8 12 100 12 0 257 6 10 81 9 10 87 31 11 396 1 2 10 5 1 276 0 1 53 3 2 122 0 1 4 1 0 38 0 2 18 320 0 46 1 0 4 0 1 136 0 1 37 1 5 229 0 1 1147 1 0 48 0 1 166 1 3 94 0 1 4 7 0 18 56 13 22 18 0 103 1 0 42 0 1 183 9 6 125 0 1 16 chain 137313 chr8 146364022 + 71765791 71767353 L1PA4 6152 - 11 1597 26586 71 0 18 48 1 0 390 0 1 262 0 1 42 0 4 407 0 1 341 chain 23144 chr8 146364022 + 71779253 71779601 THE1B 368 - 12 368 114920 35 17 15 4 0 1 100 5 0 26 2 1 107 8 23 44 chain 4777 chr8 146364022 + 71779606 71779678 THE1B-int 1605 - 6 79 197620 45 4 5 23 chain 394110 chr8 146364022 + 71789789 71794503 L1PA6 6164 + 1390 6162 10313 290 3 6 18 1 0 253 0 1 55 0 4 240 0 1 82 0 1 645 1 0 544 5 3 54 0 35 276 1 2 106 0 1 184 0 1 123 0 1 150 0 1 283 0 1 230 0 1 56 0 1 273 0 4 18 0 1 465 0 2 200 4 5 15 0 1 139 chain 11679 chr8 146364022 + 71795624 71795802 L1PB2 3958 - 155 330 153565 28 1 0 16 6 4 36 0 1 32 6 5 53 chain 11665 chr8 146364022 + 71797648 71797802 L1PA8 5853 - 0 152 153623 90 4 3 17 1 0 42 chain 171142 chr8 146364022 + 71798130 71800287 L1PA7 6471 - 4 2129 21924 494 0 1 262 2 0 78 0 6 239 38 1 407 1 0 30 1 0 200 0 1 121 3 4 281 chain 462136 chr8 146364022 + 71812897 71818518 L1PA5 6144 - 3 5657 8322 6 3 0 137 2 3 40 1 2 653 0 1 5 2 0 276 0 1 56 0 1 186 0 6 580 0 20 63 0 6 123 1 0 77 12 0 23 4 5 140 0 1 55 1 0 242 0 3 337 1 0 322 0 20 194 0 3 265 7 3 707 0 1 193 0 1 171 57 48 54 0 3 8 3 0 243 1 0 370 chain 29790 chr8 146364022 + 71870453 71871001 L1PA11 4918 - 292 807 85509 15 47 33 11 2 0 13 1 0 15 31 22 9 4 0 20 1 0 15 4 1 63 4 2 13 2 1 67 1 0 9 0 4 15 4 5 182 chain 326165 chr8 146364022 + 71875872 71880860 L1PA11 4918 - 415 4915 12340 15 1 0 16 2 0 63 8 6 9 2 1 68 5 0 96 0 4 211 2 0 26 1 0 91 0 2 296 1 0 6 0 1 14 5 18 138 1 5 52 9 9 23 0 1 135 0 1 110 0 1 289 1 0 83 1 0 172 3 0 200 6 9 41 78 112 33 0 1 287 209 6 38 0 1 110 5 0 447 328 13 1024 2 1 5 2 0 35 2 1 49 2 0 11 15 17 15 2 1 6 2 0 6 2 1 20 12 9 39 chain 35469 chr8 146364022 + 71882554 71882996 L1PA7 6471 - 4 445 75596 6 4 0 332 0 3 100 chain 22010 chr8 146364022 + 71882998 71883249 L1PA7 6471 + 5769 6020 120180 251 chain 86846 chr8 146364022 + 71883253 71884432 L1PB1 5432 - 502 1694 40839 57 1 0 71 11 18 162 0 1 186 0 1 88 1 2 200 5 6 20 7 5 24 0 2 152 1 2 4 1 0 5 0 1 80 0 1 10 0 1 93 chain 504586 chr8 146364022 + 71886497 71892630 L1PA6 6164 - 17 6164 6567 362 0 3 250 0 1 216 2 0 1114 0 17 54 0 1 30 3 1 71 0 10 276 2 1 464 0 1 43 22 0 42 0 1 154 11 3 82 0 1 12 7 19 584 0 2 1249 8 9 286 0 1 277 11 10 97 1 0 403 chain 21424 chr8 146364022 + 71897423 71897681 L1PA8 5853 - 178 434 122425 67 2 0 44 1 0 133 0 1 11 chain 6368 chr8 146364022 + 71900383 71900458 THE1A 353 - 263 339 182261 42 0 1 33 chain 6489 chr8 146364022 + 71933609 71933727 L1P4 1494 - 50 162 181336 31 1 0 3 2 0 20 9 7 33 1 0 18 chain 28793 chr8 146364022 + 71933729 71934035 AluYg6 310 - 4 310 89936 306 chain 15327 chr8 146364022 + 72080346 72080586 L1PA13 3608 - 107 335 140402 9 3 0 26 1 0 18 2 0 5 2 0 47 2 0 9 1 0 48 5 4 62 chain 5344 chr8 146364022 + 72090333 72090409 MER3 215 - 103 179 191600 34 1 2 26 1 0 14 chain 9995 chr8 146364022 + 72120855 72120971 L1PA6 6164 + 6045 6162 160605 8 0 1 108 chain 8926 chr8 146364022 + 72157770 72157887 MER30 238 + 124 238 166002 75 3 0 39 chain 27766 chr8 146364022 + 72161509 72161867 THE1C 375 - 15 375 93816 10 1 0 163 4 3 45 0 4 135 chain 25989 chr8 146364022 + 72206412 72206714 AluYf4 310 + 0 294 100057 244 0 1 41 9 0 8 chain 515644 chr8 146364022 + 72305548 72311644 L1PA5 6144 - 16 6144 5603 410 0 2 230 0 3 108 0 1 80 1 0 948 0 1 620 0 1 861 0 1 177 0 3 1513 16 7 220 0 2 176 22 18 6 0 4 226 3 4 338 11 37 103 0 1 27 chain 25734 chr8 146364022 + 72311747 72312112 L1PA10 4194 + 3805 4161 101150 37 10 11 149 5 0 68 7 6 40 3 0 34 1 0 11 chain 555369 chr8 146364022 + 72318595 72324621 L1PA2 6032 + 0 6026 782 1112 0 2 2579 8 4 1557 1 3 769 chain 25393 chr8 146364022 + 72334782 72335156 THE1C 375 - 0 375 102725 25 1 0 148 15 17 86 31 31 68 chain 527348 chr8 146364022 + 72364028 72370129 L1PA5 6144 + 3 6144 4463 1024 1 0 33 1 2 162 1 0 1433 0 2 505 0 12 134 0 1 102 0 1 88 2 0 389 0 1 41 0 1 623 0 1 272 1 0 33 3 1 1117 0 27 136 chain 89146 chr8 146364022 + 72385393 72386444 L1PA7 6471 + 5417 6470 39947 7 1 0 202 0 2 508 0 1 170 19 20 131 1 0 12 chain 15414 chr8 146364022 + 72409348 72409570 MER30 238 - 2 238 140157 46 6 3 55 9 26 106 chain 19414 chr8 146364022 + 72446834 72447094 L1PA8A 6298 + 6027 6291 128909 215 2 0 6 10 16 27 chain 20684 chr8 146364022 + 72483490 72483733 L1PA7 6471 + 6213 6457 125023 108 0 1 135 chain 529788 chr8 146364022 + 72493859 72499977 L1PA5 6144 + 0 6132 4214 1709 8 7 258 0 1 388 0 2 914 0 1 318 0 4 747 0 4 173 2 1 27 1 2 741 0 4 557 1 0 274 chain 22366 chr8 146364022 + 72524560 72524919 THE1C 375 + 0 363 118646 138 13 17 24 22 19 105 7 9 24 3 5 9 1 0 13 chain 223551 chr8 146364022 + 72577263 72580799 HERVH-int 3825 + 0 3825 17681 329 16 15 20 13 5 41 11 10 28 0 1 8 48 5 11 0 2 10 1 0 27 1 266 101 1 4 312 1 0 5 0 1 24 52 22 153 1 0 27 22 5 256 0 27 235 0 35 15 0 2 70 18 23 313 0 1 5 5 4 120 5 13 253 0 4 11 430 469 537 chain 39494 chr8 146364022 + 72587171 72587609 LTR7 482 + 0 469 70027 264 0 31 174 chain 287537 chr8 146364022 + 72587624 72591187 HERVH-int 3825 + 0 3825 14186 212 0 11 246 3 121 14 112 0 15 1 0 11 24 19 8 1 0 41 0 20 11 2 1 24 9 18 7 1 0 447 15 0 215 0 1 239 8 35 215 5 3 72 0 4 1110 8 218 487 chain 3787 chr8 146364022 + 72588099 72588142 HERVH-int 3825 + 655 698 209240 43 chain 37648 chr8 146364022 + 72592448 72592895 LTR7 482 + 0 482 72625 230 0 31 74 0 6 20 0 1 4 4 1 115 chain 8117 chr8 146364022 + 72602545 72602675 MER30 238 - 10 155 170396 38 3 0 49 16 34 24 chain 12192 chr8 146364022 + 72603673 72603824 MER107 203 + 14 166 151452 5 0 1 146 chain 87069 chr8 146364022 + 72608853 72609894 MER11C 1089 - 30 1084 40751 321 0 1 43 1 5 209 0 3 160 0 4 56 6 7 245 chain 19636 chr8 146364022 + 72626082 72626381 THE1C 375 + 0 342 128295 61 14 61 57 15 11 152 chain 445070 chr8 146364022 + 72653761 72658756 L1PA4 6152 - 9 5047 8901 263 0 5 1038 0 3 1424 0 35 2270 chain 3716 chr8 146364022 + 72685453 72685493 LTR27B 950 - 701 741 211695 40 chain 173238 chr8 146364022 + 72696800 72698710 L1PA3long 6157 - 0 1910 21685 1910 chain 5045 chr8 146364022 + 72709243 72709314 L1MA4 2864 + 2740 2809 194672 25 3 1 43 chain 5399 chr8 146364022 + 72715723 72715824 MER30 238 + 130 228 190988 45 30 0 9 0 27 17 chain 540517 chr8 146364022 + 72732496 72738630 L1PA4 6152 + 1 6141 2730 1019 1 0 216 0 1 1064 0 1 319 0 2 234 0 1 2773 0 1 111 0 1 397 chain 5912 chr8 146364022 + 72769425 72769531 L1M4c 1769 - 1127 1235 186072 7 0 1 14 8 7 4 1 0 16 0 6 11 3 0 42 chain 240309 chr8 146364022 + 72788015 72790873 L1PA7 6471 - 1694 4560 16754 105 0 4 394 1 2 178 0 1 910 0 1 283 6 10 322 3 1 423 2 1 231 chain 131370 chr8 146364022 + 72790873 72792501 L1PA7 6471 + 4785 6416 27784 24 0 1 141 1 0 747 0 2 516 0 1 90 11 12 64 4 3 30 chain 18237 chr8 146364022 + 72793009 72793298 L1PA13 3608 - 191 480 132244 18 0 7 4 1 0 28 3 0 26 1 0 31 6 7 22 9 7 108 1 0 31 chain 238084 chr8 146364022 + 72795086 72799197 L1MA1 4479 - 672 4349 16877 52 1 0 10 8 6 25 1 0 33 8 7 43 10 1 130 55 42 69 3 0 104 7 9 13 5 1 11 1 0 73 4 0 13 19 17 158 5 0 5 2 0 37 1 0 70 2 1 43 0 13 17 6 5 28 2 0 103 1 0 61 3 1 253 0 1 72 1 2 103 0 1 72 0 1 8 3 0 8 9 0 7 8 19 105 6 3 104 1 2 72 5 3 44 0 1 46 6 7 188 26 27 318 18 14 49 13 0 78 32 32 82 0 1 154 0 1 25 389 21 91 0 2 285 0 6 20 2 0 39 84 68 8 1 0 15 1 0 18 chain 7924 chr8 146364022 + 72802237 72802337 MER41B 635 + 0 100 171490 100 chain 53097 chr8 146364022 + 72811731 72812322 L1PA3long 6157 - 434 1027 56962 499 0 2 92 chain 38431 chr8 146364022 + 72812322 72812750 L1PA3long 6157 + 5714 6142 71535 428 chain 118304 chr8 146364022 + 72814662 72816161 THE1A-int 1579 - 0 1510 31687 8 0 1 72 0 5 262 0 1 293 0 1 4 2 1 45 0 3 690 7 8 9 0 1 5 2 1 100 chain 28219 chr8 146364022 + 72820172 72820481 AluYf4 310 - 0 310 92238 55 0 1 254 chain 10697 chr8 146364022 + 72823117 72823265 MER30 238 + 32 199 157428 75 5 24 68 chain 119562 chr8 146364022 + 72840159 72841589 L1PA7 6471 - 5 1441 31193 7 3 0 391 0 1 357 0 1 92 0 3 8 0 4 33 0 1 281 1 0 257 chain 418067 chr8 146364022 + 72846365 72852208 L1PA3long 6157 - 0 6138 9583 36 0 1 936 2 1 222 12 3 513 707 1003 259 1 0 2072 0 1 396 0 7 132 11 12 397 27 13 14 10 24 96 chain 60382 chr8 146364022 + 72848095 72848793 L1PA3long 6157 + 3829 4529 52496 85 4 5 323 0 1 286 chain 42718 chr8 146364022 + 72867945 72868473 MER41A 554 - 0 528 65752 528 chain 23504 chr8 146364022 + 72905044 72905341 AluY 311 + 0 290 113105 51 10 6 76 3 0 157 chain 4229 chr8 146364022 + 72930541 72930643 MER44A 345 - 165 277 204187 17 8 6 14 0 6 12 18 24 33 chain 23069 chr8 146364022 + 72937379 72937751 THE1D 372 + 7 372 115305 4 1 0 29 16 7 21 10 11 103 26 29 13 1 0 148 chain 6350 chr8 146364022 + 72958636 72958704 L1PA2 6032 + 5964 6032 182371 68 chain 24571 chr8 146364022 + 72962190 72962488 L1PA6 6164 - 3 307 107128 30 0 4 25 0 2 243 chain 7602 chr8 146364022 + 73040578 73040672 MER4D0 881 + 298 392 173534 44 1 0 35 0 1 14 chain 557273 chr8 146364022 + 73059682 73065699 L1PA2 6032 - 5 6030 582 5066 0 3 221 0 1 164 0 4 566 chain 16378 chr8 146364022 + 73068079 73068386 MSTA 426 - 0 345 137259 7 3 0 47 5 29 25 10 18 64 2 0 77 21 27 13 17 22 16 chain 32725 chr8 146364022 + 73085435 73085867 L1PA10 4194 - 44 475 79649 33 4 1 158 2 1 111 5 8 119 chain 18282 chr8 146364022 + 73091547 73091758 AluY 311 + 69 282 132121 62 0 2 149 chain 457870 chr8 146364022 + 73096779 73102878 L1PA8 5853 + 50 5853 8474 18 8 6 8 1 0 14 19 12 70 0 1 123 22 11 97 0 1 250 0 1 632 1 0 65 3 0 85 0 1 78 2 0 218 0 1 797 0 18 373 1 5 346 1 6 583 0 1 353 0 13 239 1 7 247 15 13 252 1 3 11 1 0 323 8 0 134 1 0 62 302 0 36 1 0 45 2 0 73 1 0 5 3 1 54 1 0 18 2 1 8 1 0 84 chain 274801 chr8 146364022 + 73169686 73173795 L1PA10 4194 + 126 4150 14934 11 4 0 7 51 35 10 1 0 12 3 0 6 2 0 5 48 40 20 2 0 14 1 0 8 57 31 10 2 0 21 1 0 7 2 1 10 1 0 6 5 0 15 7 0 8 9 8 73 3 0 138 28 25 232 0 1 4 31 32 238 0 2 6 15 16 170 7 1 97 0 2 6 16 7 360 0 1 364 7 3 60 1 5 369 0 1 32 5 1 53 0 1 52 13 17 152 0 1 22 14 1 16 6 18 89 0 1 336 0 1 42 8 8 159 0 1 25 21 25 84 1 0 6 0 2 109 4 5 233 3 0 26 0 1 7 chain 16576 chr8 146364022 + 73179800 73180135 HUERS-P3-int 2218 - 1094 1423 136722 32 15 18 63 55 56 78 22 12 70 chain 37455 chr8 146364022 + 73197055 73197495 LTR2 463 - 17 463 72885 76 0 1 207 0 5 157 chain 534346 chr8 146364022 + 73203288 73209518 L1PA5 6144 + 0 6144 3672 424 0 1 126 1 2 1033 0 1 228 0 1 216 90 0 1650 2 1 943 0 4 1365 1 0 137 3 1 11 chain 30553 chr8 146364022 + 73223362 73223770 L1PA10 4194 - 47 475 83336 4 0 1 25 4 1 26 0 1 4 1 0 23 0 17 141 5 6 98 0 4 77 chain 514666 chr8 146364022 + 73233384 73239364 L1PA5 6144 + 0 6144 5706 192 11 18 21 0 110 382 0 1 416 0 5 267 0 2 903 2 44 7 0 2 806 2 0 198 0 1 219 5 6 74 4 1 866 25 12 407 0 4 576 0 7 597 chain 16431 chr8 146364022 + 73241197 73241380 L1PA5 6144 - 12 197 137115 24 0 2 159 chain 43844 chr8 146364022 + 73259343 73259933 L1PB1 5432 - 376 973 64393 248 0 3 98 0 2 84 3 0 100 12 17 45 chain 60690 chr8 146364022 + 73279894 73280823 L1PB1 5432 + 4498 5422 52477 18 1 17 93 3 0 51 0 1 120 1 0 156 9 10 138 2 3 10 3 0 23 1 0 9 1 0 11 5 1 8 2 0 53 2 1 14 2 1 45 1 0 15 1 0 6 18 9 16 2 0 5 1 0 14 2 0 23 1 0 8 5 16 11 1 0 18 chain 37961 chr8 146364022 + 73300086 73300732 LTR12F 595 + 0 595 72189 93 25 0 10 6 1 33 23 2 30 79 79 197 0 1 4 1 0 145 chain 445469 chr8 146364022 + 73300800 73306212 HERV9-int 5642 + 10 5445 8886 292 20 23 44 0 4 66 12 3 141 1 2 43 0 1 4 1 0 83 6 0 110 1 23 14 0 2 238 0 1 1351 2 7 490 0 1 1319 41 43 6 2 0 37 1 0 29 4 5 592 1 2 4 1 0 240 1 0 215 chain 44089 chr8 146364022 + 73307155 73307807 LTR12F 595 + 0 595 64108 92 8 20 31 69 0 34 0 8 25 14 5 25 1 2 353 chain 122997 chr8 146364022 + 73310429 73311999 THE1B-int 1605 - 7 1605 30049 95 0 1 121 0 4 287 0 1 5 1 0 69 6 5 241 4 3 302 0 1 7 0 24 432 chain 285641 chr8 146364022 + 73318090 73322141 L1PA10 4194 + 175 4161 14312 12 2 0 12 3 0 7 2 0 10 51 43 12 2 0 15 1 0 8 20 14 5 1 0 22 2 0 21 1 0 7 5 4 6 5 0 7 1 0 7 3 0 8 4 0 3 5 0 5 1 0 13 1 2 53 1 0 4 14 4 10 0 9 698 1 0 341 9 8 89 5 9 322 2 1 145 0 1 4 1 0 108 0 3 51 0 10 8 17 7 307 3 2 51 21 20 26 48 48 39 8 10 15 1 0 139 19 0 111 0 1 57 0 1 484 1 2 494 17 15 25 1 0 11 chain 26869 chr8 146364022 + 73344633 73345008 THE1C 375 - 0 370 96748 26 1 0 154 31 27 163 chain 27795 chr8 146364022 + 73368538 73368939 L1PA17 2846 - 2424 2824 93717 36 6 7 40 5 6 209 2 1 92 1 0 4 1 0 5 chain 553639 chr8 146364022 + 73391675 73397698 L1PA2 6032 + 7 6032 989 249 1 0 777 0 3 4996 chain 3722 chr8 146364022 + 73427063 73427113 L1PA8 5853 + 5711 5760 211601 32 1 0 17 chain 7548 chr8 146364022 + 73427115 73427209 L1PA8 5853 + 5760 5852 173880 42 2 0 50 chain 5927 chr8 146364022 + 73432571 73432641 L1PA7 6471 + 6378 6448 185914 70 chain 11244 chr8 146364022 + 73445676 73445892 L1PB3 3668 - 102 295 155241 37 9 7 19 1 0 3 1 0 18 20 4 86 5 4 9 2 0 6 chain 35447 chr8 146364022 + 73447830 73448225 L1PA4 6152 + 5746 6151 75624 355 0 11 22 1 0 17 chain 5558 chr8 146364022 + 73458766 73458855 Tigger1 2417 + 871 959 189496 22 9 8 58 chain 10358 chr8 146364022 + 73467993 73468117 L1PA3long 6157 - 0 121 158874 7 0 1 28 4 0 85 chain 221004 chr8 146364022 + 73510357 73512838 L1PA4 6152 + 3660 6151 17818 688 0 4 277 1 0 498 0 3 349 1 5 667 chain 3386 chr8 146364022 + 73532316 73532360 MER33 330 + 209 253 217354 44 chain 41873 chr8 146364022 + 73611422 73611988 L1PA8 5853 - 592 1155 66799 51 51 50 151 2 0 3 1 0 223 0 1 84 chain 45105 chr8 146364022 + 73611999 73612594 L1PA8 5853 + 5265 5851 62926 14 3 1 59 0 1 172 4 3 49 1 0 46 2 0 69 16 14 47 2 1 21 1 0 89 chain 548574 chr8 146364022 + 73624917 73631058 L1PA4 6152 + 7 6151 1631 223 0 1 4169 0 1 1595 0 1 154 chain 10747 chr8 146364022 + 73653706 73654010 L1PB1 5432 - 39 314 157213 14 12 11 22 71 54 11 1 0 45 2 1 14 5 4 49 2 0 9 2 0 3 2 0 12 8 6 20 chain 26890 chr8 146364022 + 73654010 73654343 L1PB1 5432 + 4751 5083 96667 101 1 0 231 chain 5255 chr8 146364022 + 73657554 73657936 MER77B 728 - 18 444 192468 16 1 0 32 164 188 14 108 133 37 4 0 6 chain 9542 chr8 146364022 + 73659758 73659877 MER41B 635 - 0 119 162874 108 1 0 4 0 1 6 chain 28577 chr8 146364022 + 73679057 73679422 THE1A 353 - 0 353 90834 117 7 0 34 4 0 89 8 7 106 chain 5945 chr8 146364022 + 73680997 73681085 L1MB8 1703 - 1134 1221 185725 58 6 5 24 chain 52781 chr8 146364022 + 73688054 73688634 L1PA5 6144 + 5552 6132 57144 580 chain 8276 chr8 146364022 + 73693879 73693996 L1PA10 4194 - 33 146 169537 12 1 0 33 4 1 67 chain 19947 chr8 146364022 + 73726098 73726334 L1PA6 6164 - 4 240 127313 236 chain 46490 chr8 146364022 + 73750356 73750907 L1PA6 6164 - 4 558 61609 237 0 2 95 0 1 219 chain 538586 chr8 146364022 + 73752149 73759399 L1PA7 6471 - 1 6470 3056 12 0 2 552 1 4 271 2 6 485 0 1 85 0 1 31 32 1 344 0 4 247 0 3 140 7 0 662 1 0 986 0 1 347 1 0 531 0 1 192 0 1 325 0 4 425 1 0 4 0 1 192 11 10 187 5 0 311 769 9 91 chain 3316 chr8 146364022 + 73761639 73761680 L1MA5A 2387 - 88 129 218663 41 chain 567320 chr8 146364022 + 73787792 73793823 L1HS 6032 - 0 6029 69 122 0 1 5229 4 0 607 0 1 69 chain 19030 chr8 146364022 + 73810456 73810676 L1PA4 6152 + 5920 6141 130032 207 0 1 13 chain 4038 chr8 146364022 + 73839219 73839285 MER5A 189 - 23 90 206803 45 10 11 11 chain 163984 chr8 146364022 + 73842037 73843876 L1PA4 6152 - 1 1844 22809 112 0 1 549 0 3 1178 chain 52631 chr8 146364022 + 73844329 73844981 PABL_A 660 - 0 660 57220 85 0 2 245 0 5 151 0 1 171 chain 26797 chr8 146364022 + 73875024 73875419 MER84 505 + 0 392 96989 27 12 0 27 0 3 47 1 5 86 19 24 120 3 0 53 chain 17877 chr8 146364022 + 73894745 73895047 THE1B 368 + 0 306 133172 107 28 29 40 23 24 14 0 4 12 1 0 12 1 0 64 chain 112736 chr8 146364022 + 73902617 73904125 THE1C-int 1605 + 26 1605 33465 77 7 61 100 2 1 64 0 6 110 0 7 48 6 7 74 6 10 40 4 5 50 0 5 7 5 0 51 6 0 269 0 4 296 0 1 135 3 4 43 5 4 100 chain 17204 chr8 146364022 + 73904125 73904500 THE1C 375 + 0 374 135029 63 29 24 22 30 34 25 1 0 6 49 47 61 9 12 80 chain 28427 chr8 146364022 + 73910098 73910553 LTR7 482 + 0 475 91479 71 7 44 65 51 0 40 0 1 12 0 31 102 0 1 52 17 18 38 chain 24843 chr8 146364022 + 73916394 73916693 AluSp 311 - 9 303 105658 6 5 0 288 chain 3147 chr8 146364022 + 73918669 73918702 U1 164 + 0 33 221990 33 chain 25847 chr8 146364022 + 73919484 73919779 AluSp 311 - 12 310 100665 205 0 3 90 chain 6230 chr8 146364022 + 73944635 73944909 Tigger3d 321 + 17 299 183319 16 73 67 48 96 110 41 chain 13457 chr8 146364022 + 73945117 73945261 L1PA4 6152 - 12 156 146496 144 chain 3682 chr8 146364022 + 73963921 73963968 LTR41B 718 - 671 718 212201 47 chain 480269 chr8 146364022 + 73968592 73974133 L1PA6 6164 + 574 6159 7722 76 1 0 137 0 17 603 0 5 19 0 5 16 1 0 179 1 2 19 0 1 6 1 0 554 0 2 109 2 3 40 0 2 30 0 4 633 1 0 15 1 0 138 1 2 936 0 2 241 0 4 928 0 6 11 3 0 469 0 1 370 chain 22626 chr8 146364022 + 73984633 73984914 AluSq 315 + 12 296 117449 121 0 2 130 0 1 30 chain 12007 chr8 146364022 + 74035656 74035977 MLT2A2 560 - 0 333 70525 70 0 1 72 0 11 179 chain 40466 chr8 146364022 + 74036017 74036502 MER9B 498 - 0 492 68644 59 0 2 28 0 1 67 0 4 331 chain 7070 chr8 146364022 + 74036514 74036703 MLT2A2 560 - 372 560 70525 5 1 0 183 chain 50160 chr8 146364022 + 74041960 74042540 LTR10C 591 + 0 584 58897 102 0 2 190 0 1 262 0 1 26 chain 3662 chr8 146364022 + 74065932 74065991 MER51A 677 - 445 495 212544 33 9 0 17 chain 11062 chr8 146364022 + 74092419 74092586 L1PB2 3958 - 140 303 155957 43 2 1 25 2 0 65 8 7 22 chain 50363 chr8 146364022 + 74121196 74122159 L1PA8 5853 + 5209 5853 58744 264 321 0 91 1 0 23 0 8 15 2 0 69 1 0 14 1 0 10 0 1 36 2 1 19 2 1 92 chain 140132 chr8 146364022 + 74132199 74133986 L1PA10 4194 - 33 1806 26123 11 1 0 33 3 0 85 3 0 249 18 11 379 3 8 241 0 3 179 6 4 49 12 6 515 chain 3944 chr8 146364022 + 74137508 74137573 Tigger4 2445 - 2152 2223 208219 39 5 9 7 0 2 14 chain 526220 chr8 146364022 + 74147101 74153319 L1PA6 6164 - 2 6161 4568 12 0 4 204 0 1 243 0 2 44 0 2 334 0 5 668 1 0 67 3 2 1252 1 11 35 0 1 85 0 1 599 0 3 253 0 2 414 0 2 1076 99 3 270 1 0 47 4 11 506 chain 3838 chr8 146364022 + 74152451 74152491 L1PA6 6164 - 5276 5316 209813 40 chain 3473 chr8 146364022 + 74156153 74156209 MADE1 96 - 5 96 215775 19 6 41 31 chain 87169 chr8 146364022 + 74160606 74161822 L1PA13 3608 - 164 1397 40703 48 2 0 5 1 0 56 1 0 62 2 0 114 1 0 31 1 0 300 0 12 19 8 14 70 0 1 33 9 10 83 4 5 180 7 8 56 1 0 9 0 2 30 0 1 51 1 0 4 1 2 13 1 2 12 chain 62118 chr8 146364022 + 74165968 74166678 L1P1 4361 - 20 727 51842 12 2 1 23 1 0 155 1 0 516 chain 123227 chr8 146364022 + 74166978 74168339 L1PA3long 6157 + 4771 6142 29970 753 8 18 600 chain 24716 chr8 146364022 + 74172499 74172781 L1PA5 6144 + 5862 6144 106351 29 1 0 103 0 1 149 chain 39116 chr8 146364022 + 74172975 74173496 MLT2A2 560 + 0 560 70581 190 0 4 121 1 0 23 1 26 33 5 16 147 chain 30723 chr8 146364022 + 74184697 74185039 L1PA5 6144 - 6 347 82997 333 1 0 8 chain 3903 chr8 146364022 + 74240800 74240845 MLT1C 463 + 64 109 208802 45 chain 28795 chr8 146364022 + 74262636 74262946 AluYf4 310 - 0 310 89921 310 chain 30140 chr8 146364022 + 74284878 74285265 THE1C-int 1605 + 1219 1605 84352 85 7 6 108 0 1 166 2 1 19 chain 30328 chr8 146364022 + 74285265 74285642 THE1C 375 + 0 375 83846 186 1 0 164 1 0 25 chain 22152 chr8 146364022 + 74286850 74287127 L1PA16 3655 + 3312 3590 119584 105 0 4 157 3 0 12 chain 26805 chr8 146364022 + 74288302 74288666 THE1B 368 + 0 368 96960 169 1 0 29 0 3 8 0 3 4 0 1 15 12 10 126 chain 13799 chr8 146364022 + 74293701 74293940 MER44A 345 - 1 281 145279 5 2 0 53 10 21 66 22 10 11 0 7 37 0 37 33 chain 25503 chr8 146364022 + 74301848 74302141 AluSp 311 - 3 296 102208 293 chain 7924 chr8 146364022 + 74302613 74302737 MLT1A0 366 + 25 147 171492 8 2 0 24 10 9 21 0 1 59 chain 23086 chr8 146364022 + 74307029 74307316 AluSg4 309 + 0 291 115216 53 1 4 52 0 1 181 chain 24344 chr8 146364022 + 74313882 74314293 L1PA13 3608 + 3129 3518 108402 4 1 0 27 7 6 26 1 0 81 2 0 61 1 0 57 1 0 5 2 0 45 11 7 15 4 3 26 20 12 14 chain 149925 chr8 146364022 + 74380010 74381693 L1PA5 6144 + 4453 6137 24619 261 2 0 122 4 5 170 0 1 281 0 1 843 chain 17592 chr8 146364022 + 74390436 74390672 MER30 238 - 0 234 134020 45 4 0 77 3 5 107 chain 493883 chr8 146364022 + 74481092 74487145 L1PA6 6164 + 0 6158 7180 80 0 1 62 0 12 40 0 1 313 4 3 123 0 7 7 10 3 281 0 25 404 5 6 63 0 5 10 1 0 148 138 0 364 1 204 29 0 2 127 5 6 235 1 0 629 2 1 322 0 1 390 0 2 258 4 0 727 0 1 105 2 0 318 1 0 517 1 0 326 chain 26873 chr8 146364022 + 74534358 74534659 AluYf4 310 - 8 310 96730 231 0 1 70 chain 28350 chr8 146364022 + 74566918 74567219 AluYg6 310 - 9 310 91768 301 chain 329316 chr8 146364022 + 74592577 74598301 L1PB1 5432 + 173 5217 12227 59 16 16 52 17 23 204 145 146 50 8 6 146 5 8 23 0 1 51 2 1 5 0 1 31 6 5 228 2 1 56 0 1 5 17 16 79 58 57 359 0 1 28 1 0 222 5 8 101 5 4 80 6 9 123 1 0 24 0 1 21 0 6 187 1 2 149 30 38 13 29 23 45 2 1 168 1 0 162 0 1 8 3 7 93 0 1 42 1 0 99 0 1 257 2 5 22 28 27 97 0 1 278 1 0 5 0 1 18 17 16 142 0 1 264 0 4 19 5 6 71 0 2 65 790 88 243 18 14 21 1 0 6 1 0 12 19 13 48 chain 270939 chr8 146364022 + 74610338 74614176 L1MA2 4263 + 214 4114 15143 42 1 0 22 1 0 54 1 0 33 2 3 121 1 0 19 0 12 116 5 0 301 0 3 69 0 2 40 43 3 120 0 3 52 0 14 208 0 1 4 42 45 18 2 1 428 0 3 23 9 0 197 0 4 411 9 10 48 3 1 56 5 0 75 2 23 14 23 50 45 5 6 136 1 2 190 13 10 242 1 0 72 1 0 18 12 56 22 1 0 147 3 0 147 22 22 58 0 4 18 7 0 47 1 0 9 chain 29992 chr8 146364022 + 74632730 74633046 AluYb8 318 - 2 318 84831 316 chain 10590 chr8 146364022 + 74638435 74638654 L1PB1 5432 + 5225 5422 157870 11 1 0 12 5 4 28 1 0 16 1 0 6 16 6 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 22584 chr8 146364022 + 74649409 74649701 AluSp 311 - 14 307 117659 20 7 9 117 0 3 6 3 0 22 1 0 116 chain 3128 chr8 146364022 + 74668570 74668712 MLT1G1 539 - 269 433 222399 29 95 117 18 chain 3729 chr8 146364022 + 74711615 74711654 tRNA-Thr-ACA 39 - 0 39 211501 39 chain 24613 chr8 146364022 + 74714976 74715260 AluYf5 307 + 0 284 106924 284 chain 4273 chr8 146364022 + 74730565 74730738 L2a 937 + 360 530 203564 31 104 102 26 1 0 11 chain 20845 chr8 146364022 + 74730832 74731226 MSTB 430 + 6 430 124477 79 23 21 18 17 32 26 1 0 4 0 1 12 21 29 14 4 5 46 2 1 13 5 10 77 0 4 32 chain 9072 chr8 146364022 + 74734099 74734200 HERV17-int 4347 + 4246 4347 165210 101 chain 28989 chr8 146364022 + 74734512 74734838 LTR17 781 + 0 326 89041 326 chain 25826 chr8 146364022 + 74751047 74751385 MER51A 677 + 336 677 100767 176 2 1 25 9 10 66 0 3 60 chain 3338 chr8 146364022 + 74755088 74755155 L1MB7 1623 + 1353 1420 218262 22 14 13 23 0 1 8 chain 135567 chr8 146364022 + 74756402 74757961 SVA_B 1603 + 40 1603 26913 106 0 1 782 1 4 43 1 0 196 0 4 421 3 0 6 chain 14744 chr8 146364022 + 74774518 74774678 L1PA2 6032 - 1129 1289 141547 160 chain 106837 chr8 146364022 + 74774678 74775825 L1PA2 6032 + 4884 6031 35023 1147 chain 35345 chr8 146364022 + 74818259 74818734 LTR12F 595 + 0 571 75741 75 0 110 22 23 8 149 1 2 205 chain 450957 chr8 146364022 + 74818796 74824482 HERV9-int 5642 + 13 5642 8740 101 10 11 348 0 17 84 38 0 12 15 17 17 12 0 77 21 0 19 6 0 129 7 5 69 0 1 72 0 7 9 0 5 88 3 2 9 6 8 25 6 0 1747 0 14 129 5 1 54 0 1 42 0 1 28 1 2 18 0 2 485 0 3 570 0 13 729 1 2 4 1 0 240 1 0 145 2 1 81 9 7 35 2 0 25 3 2 58 1 0 14 28 5 19 9 3 17 chain 36219 chr8 146364022 + 74825822 74826275 LTR12F 595 + 0 595 74601 50 0 1 4 1 0 36 1 144 89 2 0 40 0 1 230 chain 22621 chr8 146364022 + 74826281 74826550 AluSg4 309 + 36 302 117485 261 3 0 5 chain 4227 chr8 146364022 + 74836857 74836932 L1MB3 1562 + 1445 1522 204205 18 9 8 28 0 3 20 chain 49070 chr8 146364022 + 74850725 74851400 THE1B-int 1605 + 0 685 59696 417 14 0 9 0 25 112 23 20 10 0 2 90 chain 4011 chr8 146364022 + 74853187 74853229 THE1B-int 1605 + 1556 1598 207226 42 chain 23072 chr8 146364022 + 74869109 74869422 AluY 311 + 8 297 115285 12 0 7 48 30 0 58 1 0 164 chain 9830 chr8 146364022 + 74895632 74895794 MER30 238 + 37 237 161448 45 12 13 15 1 28 9 0 1 5 1 7 36 0 3 38 chain 34404 chr8 146364022 + 74896150 74896597 LTR10F 562 - 0 562 77050 62 3 2 230 9 121 101 0 4 42 chain 19447 chr8 146364022 + 74907044 74907763 MLT1B 390 - 19 337 128829 132 455 54 132 chain 53995 chr8 146364022 + 74915424 74916105 LTR76 689 - 0 682 56370 208 0 6 81 1 0 4 3 1 260 1 0 80 1 0 42 chain 528108 chr8 146364022 + 74928127 74934315 L1PA6 6164 + 0 6162 4391 412 1 2 95 2 1 232 0 1 54 17 0 289 0 3 437 0 1 130 0 1 676 21 1 848 1 2 4 0 1 74 0 3 837 0 1 215 0 1 1833 2 0 8 chain 48641 chr8 146364022 + 74939791 74940422 PABL_A 660 - 0 654 59996 158 0 1 327 21 15 66 0 9 29 0 4 12 0 15 18 chain 23922 chr8 146364022 + 74941575 74941887 THE1C 375 + 0 311 110797 74 0 2 104 0 1 2 8 0 76 0 4 48 chain 10712 chr8 146364022 + 74942298 74942464 LTR23 429 - 38 200 157363 51 9 7 23 3 0 31 2 3 47 chain 33276 chr8 146364022 + 74944499 74944936 LTR2 463 + 0 463 78761 111 7 5 14 0 4 17 0 21 54 0 5 180 1 0 28 1 0 24 chain 83324 chr8 146364022 + 74951611 74952567 LTR13A 966 - 0 955 42191 196 1 0 162 1 0 480 0 1 116 chain 22059 chr8 146364022 + 74952578 74952933 L1MA3 4352 - 1121 1479 119970 136 0 2 26 0 2 5 7 5 75 47 48 59 chain 88973 chr8 146364022 + 74953257 74954369 MER11A 1151 + 0 1147 40019 108 0 2 66 8 0 23 2 0 28 0 4 60 0 2 389 4 3 7 1 0 116 0 1 12 5 38 29 0 3 26 0 1 53 0 1 175 chain 4514 chr8 146364022 + 74977205 74977282 MER4D 903 + 0 89 200625 30 0 1 20 12 23 15 chain 15700 chr8 146364022 + 75035632 75035919 Tigger3a 397 + 42 395 139270 30 36 71 36 0 4 64 6 34 52 21 20 42 chain 71805 chr8 146364022 + 75044983 75045959 Tigger1 2417 + 758 1741 47562 160 24 16 30 4 8 4 1 0 47 0 1 83 4 5 172 0 8 57 6 8 384 chain 20666 chr8 146364022 + 75045985 75047161 L1PB4 2604 + 1696 2481 125082 19 1 0 167 0 3 12 896 503 81 chain 4057 chr8 146364022 + 75064631 75064728 LTR16C 481 + 199 304 206529 30 37 45 30 chain 12797 chr8 146364022 + 75064801 75064980 MER30 238 - 1 191 149064 8 1 0 106 4 0 7 0 16 53 chain 531852 chr8 146364022 + 75068449 75074877 L1PA7 6471 + 7 6470 3980 270 0 1 88 6 7 1289 0 1 371 0 1 37 0 1 353 0 3 91 0 2 108 5 10 735 1 2 195 0 4 260 9 1 239 0 1 161 1 0 4 0 1 14 0 1 105 0 1 5 1 0 302 0 4 195 0 1 17 0 8 363 13 21 61 1 0 123 0 1 154 1 0 669 0 1 181 chain 3433 chr8 146364022 + 75083788 75083827 MamGypLTR3 363 + 187 226 216532 39 chain 5347 chr8 146364022 + 75084565 75084642 L1PB1 5432 + 5348 5422 191568 21 1 0 22 1 0 13 1 0 18 chain 39908 chr8 146364022 + 75088818 75089666 MER41A 554 + 0 546 69446 85 0 1 236 7 8 25 3 2 51 0 4 14 310 3 117 chain 3640 chr8 146364022 + 75091563 75091611 LTR12C 1709 - 705 872 212969 17 0 119 31 chain 18833 chr8 146364022 + 75104368 75104755 THE1D 372 - 0 372 130569 27 11 10 91 0 6 44 85 79 31 26 12 72 chain 7852 chr8 146364022 + 75121097 75121195 L1PA8 5853 - 0 97 171982 93 1 0 4 chain 125493 chr8 146364022 + 75136989 75138560 THE1A-int 1579 - 0 1579 29245 355 1 10 317 7 8 150 11 11 52 5 0 8 0 5 284 4 0 110 1 3 266 chain 27747 chr8 146364022 + 75138560 75138910 THE1A 353 - 0 348 93874 230 15 13 105 chain 5744 chr8 146364022 + 75151979 75152058 Tigger4a 237 - 121 200 187699 8 1 0 66 0 1 4 chain 7349 chr8 146364022 + 75152066 75152213 L1MA3 4352 - 0 157 175099 17 6 7 7 0 12 15 8 7 5 1 0 20 3 2 65 chain 11548 chr8 146364022 + 75162799 75162968 MER30 238 + 56 238 154110 24 1 0 27 5 22 70 5 2 37 chain 368418 chr8 146364022 + 75164694 75168770 L1PA4 6152 + 2051 6134 11144 266 1 0 69 0 4 2914 0 4 826 chain 28140 chr8 146364022 + 75184832 75185138 AluYg6 310 - 6 310 92506 178 3 1 125 chain 21994 chr8 146364022 + 75190299 75190581 THE1B 368 + 0 294 120259 44 5 20 108 1 0 24 2 0 98 chain 24047 chr8 146364022 + 75190598 75190892 HERVL-int 5654 + 4720 5020 110066 181 0 3 75 0 3 38 chain 27558 chr8 146364022 + 75201947 75202263 L1PA5 6144 - 2143 2459 94223 316 chain 184998 chr8 146364022 + 75202263 75204422 L1PA5 6144 + 4011 6141 20498 149 0 13 131 0 1 27 0 1 8 0 4 972 0 5 376 49 0 296 0 1 131 1 0 9 4 0 6 chain 38517 chr8 146364022 + 75223759 75224201 L1PA3long 6157 - 0 444 71415 142 0 2 300 chain 4298 chr8 146364022 + 75255902 75255984 MER5A 189 - 34 137 203248 22 12 14 27 0 19 21 chain 228090 chr8 146364022 + 75284010 75286598 L1PA5 6144 - 0 2607 17411 148 0 5 692 0 3 411 0 8 89 7 9 618 1 2 622 chain 7512 chr8 146364022 + 75288921 75289026 HY3 101 + 0 100 174078 6 1 0 58 5 1 35 chain 524894 chr8 146364022 + 75297423 75303874 L1PA7 6471 - 10 6471 4694 139 3 0 6 7 9 326 10 1 325 1 0 36 1 0 209 0 1 210 0 4 373 1 2 142 0 4 993 0 7 202 5 1 269 1 0 110 6 7 143 0 1 105 1 0 196 1 2 144 0 1 66 0 3 387 6 7 332 16 0 18 1 13 432 0 4 186 2 0 167 5 6 271 5 9 180 1 0 229 0 1 182 chain 26494 chr8 146364022 + 75306263 75306608 THE1B 368 - 24 368 98070 89 5 6 57 2 0 24 1 0 123 0 1 44 chain 554348 chr8 146364022 + 75308595 75314935 L1PA3long 6157 - 2 6153 905 110 0 1 1070 0 1 659 196 5 56 1 0 1934 2 0 1273 1 0 283 0 2 19 1 2 611 0 1 124 chain 15892 chr8 146364022 + 75310441 75310630 L1PA3long 6157 - 3743 3932 138429 91 1 0 10 1 2 86 chain 5633 chr8 146364022 + 75317589 75317658 MER2 342 - 180 250 188736 52 0 1 17 chain 7708 chr8 146364022 + 75321472 75321595 LOR1a 498 + 0 122 172881 64 12 12 26 2 1 19 chain 26238 chr8 146364022 + 75323118 75323499 THE1D 372 + 0 372 99061 19 0 3 53 19 0 60 6 10 45 0 4 146 2 1 31 chain 41459 chr8 146364022 + 75341060 75341518 L1PA4 6152 - 111 568 67337 36 1 0 421 chain 25714 chr8 146364022 + 75381624 75381918 AluY 311 + 3 297 101236 129 0 1 74 2 0 4 0 1 85 chain 25130 chr8 146364022 + 75381939 75382234 AluSp 311 + 11 307 104125 113 0 1 182 chain 93241 chr8 146364022 + 75382492 75383537 L1PA4 6152 - 1 1055 38585 6 0 2 654 0 3 184 0 4 201 chain 46657 chr8 146364022 + 75417262 75417941 MER4D1 891 + 0 756 61491 112 13 10 66 6 7 43 8 36 11 0 2 142 1 0 30 0 4 9 0 1 89 8 9 26 0 7 56 0 37 59 chain 37149 chr8 146364022 + 75420482 75420946 LTR2 463 - 0 463 73309 24 1 0 30 1 0 28 0 1 380 chain 97626 chr8 146364022 + 75429176 75430266 L1PA4 6152 - 15 1105 37388 127 1 0 4 1 2 957 chain 134011 chr8 146364022 + 75433191 75434716 L1PA5 6144 + 4610 6141 27206 757 0 1 457 0 1 87 0 4 224 chain 17360 chr8 146364022 + 75437761 75437974 L1PA6 6164 + 5951 6162 134626 206 2 0 5 chain 49601 chr8 146364022 + 75439498 75440325 L1PB1 5432 - 15 810 59321 13 1 0 12 1 0 22 8 5 21 23 18 15 9 0 11 2 0 4 1 0 15 1 0 113 16 10 13 7 5 23 13 0 8 7 11 119 1 0 80 0 1 6 7 6 177 0 3 71 0 6 7 chain 246862 chr8 146364022 + 75448860 75452250 L1PA11 4918 - 290 4434 16405 17 58 44 13 1 0 11 54 42 13 1 0 16 9 7 58 2 0 13 2 1 65 5 0 11 0 4 290 0 2 110 0 4 71 6 487 162 1 6 201 1 0 68 12 11 147 3 4 156 0 1 64 0 4 237 0 7 40 1 0 40 2 0 16 0 33 21 1 0 313 9 10 122 0 257 13 0 1 4 1 0 29 2 1 14 5 6 12 1 0 398 1 0 157 8 9 115 2 1 185 chain 5365 chr8 146364022 + 75479382 75479446 MSTA 426 - 361 425 191362 64 chain 11697 chr8 146364022 + 75480576 75480734 MER107 203 + 8 186 153489 22 0 1 90 0 23 22 4 0 20 chain 17230 chr8 146364022 + 75500028 75500233 AluYk4 311 + 82 287 134980 127 1 0 31 0 1 46 chain 12656 chr8 146364022 + 75502637 75502889 L1PA11 4918 + 4332 4566 149620 29 0 1 31 2 1 12 1 0 69 2 0 13 1 0 20 4 0 11 29 20 11 5 4 12 chain 539836 chr8 146364022 + 75506482 75512487 L1PA3long 6157 - 11 6157 2839 832 0 4 956 0 4 3185 6 9 88 0 2 160 10 138 151 1 0 461 0 3 5 2 0 148 chain 22699 chr8 146364022 + 75512547 75512833 AluSp 311 + 10 310 117081 78 0 1 87 0 1 52 0 14 56 2 0 11 chain 49737 chr8 146364022 + 75518112 75518671 LTR6B 557 - 0 557 59203 103 0 1 52 3 0 401 chain 67173 chr8 146364022 + 75527847 75528622 L1PA5 6144 - 0 772 49580 113 1 0 219 2 1 434 1 0 5 chain 70736 chr8 146364022 + 75559910 75560965 MER11A 1151 + 0 1151 48048 79 0 8 109 12 11 21 1 0 66 0 11 158 45 46 154 0 1 18 20 24 26 0 7 6 5 2 67 0 1 19 0 57 60 3 16 25 7 6 89 1 0 64 chain 118987 chr8 146364022 + 75567004 75568553 THE1A-int 1579 + 30 1579 31419 58 0 1 677 9 10 49 15 20 150 34 26 244 0 1 313 chain 26410 chr8 146364022 + 75568557 75568905 THE1A 353 + 4 353 98373 106 1 0 69 5 7 167 chain 12593 chr8 146364022 + 75574617 75574819 L1PA8 5853 + 5638 5853 149867 37 16 14 51 2 1 19 2 1 6 0 17 69 chain 3711 chr8 146364022 + 75576216 75576308 L1PB3 3668 + 3529 3613 211778 33 11 7 12 2 1 13 7 4 14 chain 81123 chr8 146364022 + 75592575 75593458 L1PA3long 6157 + 5274 6157 43124 883 chain 9430 chr8 146364022 + 75600911 75601154 L1PB1 5432 - 5 223 163409 5 2 0 18 1 0 31 4 3 20 7 5 14 1 0 4 9 7 12 16 6 6 3 0 12 6 5 42 1 0 16 2 1 11 chain 15865 chr8 146364022 + 75610931 75611126 L1PA8A 6298 + 6095 6290 138758 195 chain 35013 chr8 146364022 + 75611181 75611621 L1PB1 5432 + 4650 5098 76176 21 0 3 397 1 6 21 chain 30503 chr8 146364022 + 75629247 75629690 L1PA8 5853 - 0 446 83420 27 1 10 14 2 1 41 1 0 15 2 1 42 0 7 10 22 15 62 2 0 44 1 0 157 chain 76155 chr8 146364022 + 75645324 75646159 L1PA3long 6157 - 6 841 45390 835 chain 19695 chr8 146364022 + 75646159 75646373 L1PA3long 6157 + 5086 5300 127557 214 chain 43786 chr8 146364022 + 75649141 75649746 MER51A 677 + 0 661 64470 136 1 0 17 19 83 251 1 0 5 0 1 20 1 2 68 8 0 78 chain 40860 chr8 146364022 + 75656562 75657017 L1PA3long 6157 - 1 455 68083 4 1 0 450 chain 4718 chr8 146364022 + 75671371 75671471 MER20 218 + 33 141 198304 32 14 20 6 2 0 30 1 2 6 0 3 9 chain 67191 chr8 146364022 + 75675845 75676769 L1PREC2 3366 + 1718 2644 49568 9 0 1 33 7 3 566 4 3 7 0 1 10 0 8 20 5 1 21 5 6 12 14 9 7 0 5 204 chain 4528 chr8 146364022 + 75683918 75683984 LTR12D 1347 - 653 760 200474 43 1 42 22 chain 42717 chr8 146364022 + 75719585 75720136 MER41A 554 + 0 554 65753 44 3 0 278 0 1 146 7 12 73 chain 4922 chr8 146364022 + 75733792 75733914 MER5A1 166 - 1 124 196029 34 51 52 37 chain 552946 chr8 146364022 + 75778754 75784780 L1PA2 6032 + 0 6028 1072 1174 3 0 789 0 1 2227 0 1 653 0 1 1170 0 2 10 chain 7222 chr8 146364022 + 75801670 75801758 L1MC2 1988 - 558 646 175928 88 chain 554034 chr8 146364022 + 75854885 75860913 L1PA2 6032 - 0 6032 945 773 1 3 749 1 0 1115 0 2 1426 0 1 1963 chain 14416 chr8 146364022 + 75866273 75866429 L1PA3long 6157 - 0 156 143164 156 chain 29797 chr8 146364022 + 75875308 75875628 AluYb8 318 + 0 318 85447 312 2 0 6 chain 30205 chr8 146364022 + 75876946 75877263 AluYb8 318 - 1 318 84179 317 chain 21110 chr8 146364022 + 75923364 75923590 L1PA3long 6157 - 2 228 123525 226 chain 37123 chr8 146364022 + 75956298 75956801 MER9a3 513 + 15 513 73348 98 0 1 104 14 2 38 2 1 48 0 4 76 1 3 43 2 3 77 chain 368516 chr8 146364022 + 75957469 75961818 HERVK9-int 4720 + 334 4705 11139 140 0 1 508 0 1 2273 0 4 7 4 0 231 3 0 99 11 32 153 5 3 701 0 4 137 6 0 7 4 10 60 chain 42376 chr8 146364022 + 75961843 75962342 MER9a3 513 + 10 513 66182 8 0 2 90 0 1 323 1 2 77 chain 258416 chr8 146364022 + 75968896 75972767 L1PA10 4194 + 410 4161 15783 78 7 2 261 1 2 5 1 0 99 9 4 293 0 1 5 1 0 19 0 4 244 186 8 21 13 27 164 0 2 108 3 0 10 0 2 140 0 1 76 6 20 17 1 2 188 9 13 166 9 11 205 15 13 38 55 25 117 5 0 15 5 62 77 41 58 31 1 0 87 1 6 30 8 9 52 9 10 257 0 1 15 1 0 238 1 0 239 8 4 79 0 3 8 11 0 14 5 6 14 3 0 30 2 1 14 chain 60934 chr8 146364022 + 75975155 75975832 L1PA3long 6157 + 5476 6157 52372 5 2 0 342 0 1 322 0 5 6 chain 69218 chr8 146364022 + 75978591 75979353 L1PA3long 6157 - 13 771 48714 668 4 0 90 chain 24752 chr8 146364022 + 75992113 75992387 L1PA4 6152 - 9 283 106157 274 chain 46268 chr8 146364022 + 75992387 75992892 L1PA4 6152 + 5359 5864 61799 505 chain 59852 chr8 146364022 + 76045985 76046645 L1PA3long 6157 - 0 658 52901 15 3 0 323 0 1 319 chain 43488 chr8 146364022 + 76052868 76053417 L1PA6 6164 + 5618 6159 64830 122 11 4 238 3 0 10 1 2 16 1 2 147 chain 150065 chr8 146364022 + 76062622 76064399 L1PA7 6471 + 4699 6469 24603 226 10 0 466 13 14 216 0 3 783 1 0 62 chain 3089 chr8 146364022 + 76083360 76083395 MLT1B 390 + 332 367 223110 35 chain 3028 chr8 146364022 + 76084419 76084516 AluJo 314 + 52 276 224424 8 13 0 25 27 167 24 chain 83935 chr8 146364022 + 76090059 76091190 LTR12D 1347 - 0 1347 41936 147 0 200 289 32 18 35 37 0 91 0 31 201 0 36 299 chain 1906 chr8 146364022 + 76090495 76090527 LTR12D 1347 - 653 695 146725 10 1 11 21 chain 2203 chr8 146364022 + 76090562 76090599 LTR12D 1347 - 730 767 146725 37 chain 456087 chr8 146364022 + 76114561 76120294 L1PA8 5853 - 9 5745 8541 84 3 2 17 2 1 51 1 0 10 1 0 16 0 1 39 2 1 14 2 0 46 1 0 19 3 1 232 4 0 132 0 1 82 1 2 84 2 0 8 0 3 633 0 1 30 1 0 816 0 1 399 8 4 243 1 2 124 0 1 41 0 8 168 0 1 25 3 1 418 0 2 49 11 5 37 2 0 165 7 10 415 1 0 208 0 1 448 5 7 114 0 4 308 0 4 197 chain 29794 chr8 146364022 + 76126902 76127212 AluYa5 310 - 0 310 85458 310 chain 69300 chr8 146364022 + 76142557 76143357 L1PA5 6144 + 5337 6141 48682 8 0 3 313 0 1 479 chain 365660 chr8 146364022 + 76172147 76177930 L1PB1 5432 + 33 5122 11217 558 1 0 4 0 5 432 14 13 260 4 5 74 0 3 25 21 6 9 0 14 295 0 1 484 0 177 99 9 1 26 5 6 301 3 0 55 0 3 331 0 1 30 1 0 177 0 10 281 916 16 220 0 1 30 1 0 61 2 0 180 0 1 28 32 34 26 22 30 38 7 20 214 3 0 96 2 0 278 4 5 100 0 1 5 1 2 9 1 0 8 chain 29090 chr8 146364022 + 76175648 76176022 MLT2A1 477 + 0 399 88594 149 1 24 6 0 1 20 3 4 195 chain 11311 chr8 146364022 + 76184819 76184942 L1P2 5180 - 3501 3624 154313 123 chain 65290 chr8 146364022 + 76184942 76185734 L1PA7 6471 + 5678 6470 50428 612 2 0 5 0 2 173 chain 532071 chr8 146364022 + 76190608 76196637 L1PA4 6152 + 6 6151 3953 66 0 1 81 0 1 425 1 0 128 12 5 58 1 129 1786 2 1 42 0 1 3169 0 1 97 7 0 154 chain 30376 chr8 146364022 + 76205637 76205953 AluYb8 318 + 0 316 83714 316 chain 512689 chr8 146364022 + 76236463 76242460 L1PA5 6144 + 3 6138 5903 144 14 15 398 10 9 132 7 0 63 1 129 1987 1 0 22 0 12 33 0 1 1389 0 4 1464 0 1 175 1 6 6 3 0 4 2 0 141 chain 482901 chr8 146364022 + 76266549 76272215 L1PA5 6144 - 0 6144 7626 11 2 3 582 1 0 113 0 13 1306 0 461 499 0 1 24 0 1 1703 1 0 258 13 4 28 9 0 373 11 12 619 0 20 113 chain 71520 chr8 146364022 + 76272223 76273225 L1PB1 5432 + 1317 2301 47685 11 0 1 68 12 0 8 2 0 30 4 3 104 19 8 69 9 10 34 0 3 10 0 1 198 1 2 261 0 1 162 chain 32391 chr8 146364022 + 76273225 76273687 LTR71A 459 + 0 459 80206 179 0 1 8 6 0 6 5 11 34 9 8 55 6 5 138 2 0 14 chain 14203 chr8 146364022 + 76274723 76274910 L1PB1 5432 + 4784 4972 143872 20 1 2 166 chain 9041 chr8 146364022 + 76274915 76275030 L1PB1 5432 + 4978 5094 165373 29 0 1 86 chain 58240 chr8 146364022 + 76297017 76297919 Charlie3 2679 + 35 2678 53839 71 122 120 161 1 0 27 0 3 53 0 1747 199 3 0 187 21 18 57 chain 3602 chr8 146364022 + 76313803 76313848 MER2 342 - 297 342 213610 45 chain 2902 chr8 146364022 + 76314861 76314892 L1MA8 2339 - 145 176 227003 31 chain 409109 chr8 146364022 + 76356248 76360677 L1PA2 6032 + 1599 6032 9830 4331 0 4 98 chain 21896 chr8 146364022 + 76390946 76391222 AluSp 311 - 5 277 120642 75 7 2 97 0 1 97 chain 54309 chr8 146364022 + 76429502 76430217 THE1B-int 1605 - 6 735 56155 375 1 0 75 8 9 30 0 11 207 5 8 14 chain 32323 chr8 146364022 + 76430227 76430587 L1PA4 6152 - 3 362 80320 257 1 0 102 chain 9789 chr8 146364022 + 76441035 76441202 THE1D 372 - 0 176 161656 32 1 0 21 7 8 17 0 2 58 17 24 14 chain 34234 chr8 146364022 + 76461848 76462228 L1PA3long 6157 - 2 382 77304 380 chain 7562 chr8 146364022 + 76481757 76481858 THE1D 372 - 272 372 173788 58 2 1 41 chain 55754 chr8 146364022 + 76487888 76488597 L1PA8A 6298 - 7 717 55270 42 2 0 5 0 2 631 0 1 29 chain 31739 chr8 146364022 + 76496948 76497384 MLT2A1 477 - 2 475 81260 17 1 0 38 4 37 209 7 11 20 0 1 140 chain 18075 chr8 146364022 + 76502899 76503177 L1PA15 4387 - 257 530 132663 25 3 2 171 1 0 23 13 12 11 2 0 29 chain 8712 chr8 146364022 + 76503200 76503313 L1PA8 5853 - 0 112 167133 93 1 0 19 chain 250538 chr8 146364022 + 76511844 76515004 L1PA7 6471 + 3296 6468 16209 98 5 7 83 1 2 42 1 2 4 1 0 475 1 0 4 0 1 564 0 1 172 0 1 202 0 1 107 5 8 176 4 5 47 0 1 60 1 2 241 0 4 15 1 0 164 5 8 53 5 0 447 10 10 154 2 1 10 chain 43463 chr8 146364022 + 76530917 76531455 MER41A 554 - 0 538 64854 538 chain 6717 chr8 146364022 + 76532090 76532203 PABL_A-int 1935 - 65 176 179562 15 11 10 7 1 0 79 chain 563546 chr8 146364022 + 76533559 76539590 L1HS 6032 - 0 6031 250 6031 chain 40416 chr8 146364022 + 76543446 76544002 MER41A 554 - 0 554 68714 159 1 0 22 1 0 27 8 7 80 1 2 67 0 1 4 6 5 180 chain 318353 chr8 146364022 + 76546701 76550491 L1PA5 6144 - 16 6142 12653 314 0 1 378 0 13 536 0 1 227 1 0 842 0 1 603 6 5 48 1 0 555 0 2309 117 29 43 133 chain 25895 chr8 146364022 + 76568383 76568671 L1PA4 6152 + 5863 6151 100460 288 chain 131419 chr8 146364022 + 76576616 76578263 LTR12C 1709 - 0 1709 27772 59 0 131 43 1 0 4 38 9 23 0 1 211 0 4 106 3 1 5 1 0 275 1 0 134 41 0 193 5 6 504 chain 3502 chr8 146364022 + 76577520 76577561 LTR12C 1709 - 847 887 89957 25 1 0 15 chain 8216 chr8 146364022 + 76578269 76578419 THE1D 372 + 211 365 169856 12 2 1 38 10 11 52 13 17 23 chain 22838 chr8 146364022 + 76581543 76581873 THE1B 368 + 0 328 116404 44 38 39 90 1 0 27 2 0 128 chain 10575 chr8 146364022 + 76581897 76582080 MLT2A2 560 + 253 560 157935 38 0 1 5 1 0 5 2 111 37 5 22 27 1 0 6 2 1 54 chain 8977 chr8 146364022 + 76595664 76595819 MSTA 426 + 0 177 165728 57 16 15 33 9 32 40 chain 22223 chr8 146364022 + 76597240 76597605 THE1D 372 + 0 372 119250 104 1 0 6 6 5 40 60 69 148 chain 21368 chr8 146364022 + 76629439 76629780 THE1B 368 - 20 368 122624 36 12 13 50 10 9 8 1 0 18 0 4 10 0 1 4 3 5 21 1 0 99 2 4 66 chain 22447 chr8 146364022 + 76639604 76639865 AluYk4 311 - 17 278 118266 261 chain 168380 chr8 146364022 + 76675618 76677869 L1P2 5180 + 1114 3360 22242 199 1 0 5 7 8 141 2 1 638 1 4 113 2 4 92 16 0 200 5 0 158 0 1 248 7 5 68 0 1 146 0 10 32 0 1 108 0 1 62 chain 38244 chr8 146364022 + 76677876 76678353 L1PA6 6164 + 5685 6160 71778 315 8 0 8 4 12 134 2 0 6 chain 279270 chr8 146364022 + 76678796 76682213 L1PA7 6471 - 1 3416 14679 149 0 1 34 1 0 26 0 1 550 5 0 59 10 11 18 1 0 252 1 0 165 0 2 252 0 1 424 0 1 1027 1 0 254 4 0 6 8 12 170 chain 72451 chr8 146364022 + 76682213 76683130 L1PA7 6471 + 2166 3054 47285 242 0 1 180 1 0 51 29 0 414 chain 3315 chr8 146364022 + 76706806 76706843 MLT1E 632 - 595 632 218677 37 chain 6293 chr8 146364022 + 76730094 76730335 MLT1A0 366 - 35 285 182863 20 0 3 54 148 154 19 chain 61094 chr8 146364022 + 76744949 76745931 L1PB1 5432 + 4471 5422 52293 155 16 0 164 7 18 61 0 1 204 0 2 27 1 2 9 5 0 24 28 23 5 0 2 51 1 0 17 1 0 45 1 0 15 28 16 14 3 1 5 1 0 10 13 11 12 0 1 4 1 0 22 1 0 12 1 0 18 chain 351729 chr8 146364022 + 76784437 76788691 L1P2 5180 - 848 5178 11554 25 0 1 556 0 1 578 1 0 94 0 1 533 0 1 217 1 0 885 1 0 647 1 0 6 1 0 272 1 0 8 21 94 13 25 32 28 1 0 18 0 2 53 35 34 39 1 0 44 1 0 148 chain 35787 chr8 146364022 + 76789747 76790220 L1PA10 4194 - 93 570 75154 25 3 0 93 0 2 103 1 0 85 0 2 141 1 5 21 chain 282736 chr8 146364022 + 76836866 76843111 L1PA10 4194 + 224 4145 14490 8 2 0 9 1 0 9 5 4 16 3 1 15 1 0 8 60 34 7 2 0 21 1 0 6 5 4 7 1 0 7 4 3 10 64 52 4 0 1 34 2 0 221 0 1 174 1 0 62 0 1 65 0 1 378 0 9 57 3 4 521 4 0 117 0 16 537 1 0 6 4 2 6 0 1 35 0 3 6 0 2 151 0 4 82 2303 0 303 8 11 253 0 1 4 7 6 592 3 0 29 chain 29350 chr8 146364022 + 76892809 76893117 AluYa5 310 - 2 310 87288 308 chain 6181 chr8 146364022 + 76909254 76909729 LTR12D 1347 + 501 1075 183734 35 183 142 13 1 19 42 175 297 26 chain 24213 chr8 146364022 + 76911827 76912126 MER1A 529 - 86 386 109134 110 0 1 189 chain 30201 chr8 146364022 + 76919966 76920313 L1PA4 6152 + 5806 6152 84191 341 1 0 5 chain 54781 chr8 146364022 + 76951952 76952607 HERVL-int 5654 - 4999 5654 55855 546 1 0 4 0 1 104 chain 31952 chr8 146364022 + 76952607 76953087 MLT2A1 477 - 0 473 80936 41 63 51 61 1 0 149 3 7 27 5 6 105 0 1 25 chain 107231 chr8 146364022 + 76971710 76973073 LTR12C 1709 - 0 1578 34906 84 5 4 393 0 4 65 0 47 275 1 0 15 0 119 237 0 2 80 3 46 40 6 7 73 6 7 80 chain 3452 chr8 146364022 + 76973621 76973660 MSTB-int 1649 + 1593 1632 216190 39 chain 107265 chr8 146364022 + 76996273 76997996 L1PB1 5432 - 2 1685 34895 4 1 0 4 1 0 18 1 0 13 1 0 22 1 0 15 33 28 17 16 8 5 3 0 15 1 0 44 1 0 16 5 4 48 3 1 9 2 0 3 2 0 12 3 2 4 1 0 24 3 0 8 49 48 136 8 1 82 0 1 4 19 27 11 8 0 86 9 8 70 4 0 13 0 1 313 1 0 80 0 7 187 4 5 4 1 0 275 chain 2993 chr8 146364022 + 76998231 76998270 L1PB1 5432 - 3306 3344 225151 34 1 0 4 chain 28911 chr8 146364022 + 77015961 77016334 MLT2A1 477 - 92 458 89414 195 12 8 12 4 1 150 chain 64649 chr8 146364022 + 77016348 77017207 HERVL-int 5654 - 5 883 50724 71 2 1 90 0 2 228 0 18 9 7 8 169 5 3 170 5 6 103 chain 133210 chr8 146364022 + 77019046 77020559 L1PA5 6144 - 9 1523 27346 528 1 2 984 chain 139530 chr8 146364022 + 77020559 77022160 L1PA5 6144 + 2969 4574 26216 276 0 4 159 1 0 459 0 1 706 chain 6287 chr8 146364022 + 77057554 77057623 L1PA6 6164 - 15 84 182906 69 chain 10502 chr8 146364022 + 77079639 77079759 L1PA8A 6298 + 6142 6262 158240 120 chain 139320 chr8 146364022 + 77081662 77083493 LTR12C 1709 + 0 1709 26245 139 0 1 125 5 0 15 1 44 258 1 0 157 41 0 98 1 0 46 119 0 227 1 0 7 3 1 106 0 4 481 chain 2800 chr8 146364022 + 77082363 77082404 LTR12C 1709 + 857 898 87235 41 chain 4712 chr8 146364022 + 77082549 77082618 LTR12C 1709 + 1043 1112 87235 69 chain 3510 chr8 146364022 + 77082618 77082668 LTR12C 1709 + 674 724 93452 50 chain 77206 chr8 146364022 + 77095854 77096718 L1PA4 6152 - 0 867 44864 6 0 2 140 0 1 718 chain 28931 chr8 146364022 + 77125266 77125569 AluYb8 318 - 15 318 89325 303 chain 29750 chr8 146364022 + 77129287 77129599 AluYb8 318 - 6 318 85654 312 chain 7315 chr8 146364022 + 77152111 77152198 L1PA16 3655 - 77 164 175335 87 chain 6455 chr8 146364022 + 77165932 77166007 L1PA4 6152 - 0 75 181598 75 chain 27105 chr8 146364022 + 77180628 77181005 MLT2A1 477 + 4 380 95928 161 8 5 11 8 9 13 1 2 175 chain 40652 chr8 146364022 + 77183526 77184103 LTR61 567 - 0 567 68368 152 0 3 44 12 0 142 8 5 66 12 2 87 6 17 22 4 5 22 chain 346300 chr8 146364022 + 77195006 77199248 L1PA7 6471 - 185 6471 11720 162 0 17 348 27 5 50 17 18 69 4 7 720 0 2 80 1 5 52 0 1 250 0 1 80 0 2 408 1 0 618 0 1 688 2 2036 254 0 1 411 chain 542848 chr8 146364022 + 77220351 77226354 L1PA2 6032 + 3 6032 2365 46 8 14 9 0 1 183 1 0 355 0 4 505 0 1 973 0 7 1465 0 2 568 0 9 398 1 0 1476 2 0 13 chain 4977 chr8 146364022 + 77229472 77229582 MLT2C1 407 + 0 123 195403 34 26 39 30 1 2 4 1 0 14 chain 303638 chr8 146364022 + 77240045 77244604 L1PB1 5432 - 19 5326 13263 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 34 28 43 1 0 16 2 1 53 2 0 10 5 1 9 1 0 13 1 0 20 1 0 7 332 1155 220 2 4 119 0 14 178 2 0 196 1 4 234 1 0 38 13 17 433 12 0 85 70 0 342 1 2 410 3 0 5 0 3 250 14 1 57 1 2 90 0 1 16 0 2 20 5 17 283 1 2 5 1 0 287 0 4 174 7 11 24 0 1 33 6 5 54 1 0 4 5 6 193 chain 14616 chr8 146364022 + 77263029 77263191 L1PA4 6152 + 5989 6151 142530 162 chain 497730 chr8 146364022 + 77272253 77278059 L1PA3long 6157 + 10 5833 6973 564 0 1 128 9 16 489 7 8 4 1 0 17 1 13 310 0 1 1609 3 1 346 9 6 724 0 2 1135 1 0 449 chain 22059 chr8 146364022 + 77300082 77300358 AluSp 311 + 13 298 119967 124 5 14 147 chain 9182 chr8 146364022 + 77306080 77306188 L1PA5 6144 - 0 108 164647 108 chain 11960 chr8 146364022 + 77311359 77311637 MER1B 344 + 37 336 152362 42 78 107 34 4 0 42 23 19 55 chain 10896 chr8 146364022 + 77337104 77337244 MER85 139 - 0 139 156607 51 1 0 88 chain 96669 chr8 146364022 + 77337394 77338429 L1HS 6032 - 0 1035 37652 1035 chain 49303 chr8 146364022 + 77342305 77342963 L1PA10 4194 - 33 690 59515 11 1 0 31 11 8 29 3 0 203 1 3 148 0 4 220 chain 459898 chr8 146364022 + 77348665 77354801 L1PA7 6471 - 4 6465 8402 159 0 1 277 0 2 402 0 1 4 2 1 100 0 1 532 0 3 1428 5 9 23 0 1 37 1 2 223 0 2 516 1 4 94 8 3 10 7 0 659 0 3 5 3 0 22 5 24 11 0 1 5 2 1 142 1 0 694 0 21 48 7 6 51 6 6 26 39 114 57 5 15 163 200 396 156 chain 3193 chr8 146364022 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chain 25704 chr8 146364022 + 77505656 77506014 THE1A 353 + 0 353 101269 82 0 1 28 1 0 87 2 0 129 10 7 19 chain 86174 chr8 146364022 + 77549197 77550207 L1PA6 6164 + 5138 6150 41087 451 0 2 306 2 3 104 1 0 146 chain 20259 chr8 146364022 + 77707779 77708024 AluSp 311 - 9 263 126347 134 0 4 37 0 2 31 0 3 43 chain 505811 chr8 146364022 + 77808339 77814465 L1PA6 6164 - 2 6164 6477 225 0 1 216 3 0 321 0 1 69 7 11 217 0 1 253 2 3 415 0 1 53 2 6 11 12 21 384 1 2 680 1 5 5 0 1 42 6 7 21 0 1 659 0 1 54 0 1 142 1 2 1209 25 26 528 1 0 48 5 12 4 1 0 85 1 0 156 1 0 23 0 2 37 1 0 4 0 1 195 chain 81292 chr8 146364022 + 77814842 77815989 L1PA8 5853 - 72 1218 43045 18 4 3 9 1 0 10 2 1 51 11 11 70 2 0 11 0 2 31 1 0 337 0 6 6 70 64 139 8 6 148 0 5 218 chain 22877 chr8 146364022 + 77838391 77838649 L1PA4 6152 - 1 260 116202 147 0 1 111 chain 10040 chr8 146364022 + 77859621 77859736 L1PA4 6152 + 6031 6146 160381 115 chain 33245 chr8 146364022 + 77885384 77885750 L1P1 4361 - 249 615 78809 366 chain 12786 chr8 146364022 + 77885767 77885920 L1P1 4361 + 4156 4320 149108 116 0 12 21 1 0 15 chain 5591 chr8 146364022 + 77903226 77903297 Tigger3c 601 + 476 547 189168 71 chain 41936 chr8 146364022 + 77933335 77933851 L1PA8A 6298 - 1190 1705 66317 407 2 1 107 chain 9818 chr8 146364022 + 77933851 77934351 L1PA8A 6298 + 5084 5591 40326 153 9 13 117 1 0 109 1 0 13 5 9 59 0 1 33 chain 260443 chr8 146364022 + 77934710 77937592 L1PA3long 6157 + 3266 6157 15675 518 0 1 815 0 1 709 0 4 171 0 1 222 0 1 298 0 2 4 1 0 144 chain 13372 chr8 146364022 + 77937658 77938339 L1PA8A 6298 + 5608 6290 40326 271 2 1 381 0 2 27 chain 35175 chr8 146364022 + 77948122 77948673 L1PB1 5432 - 136 668 75945 15 1 0 45 1 0 15 2 1 53 2 0 8 27 21 24 47 32 118 0 7 193 chain 114716 chr8 146364022 + 77948675 77950187 L1PB1 5432 + 3217 4748 32875 130 0 1 144 0 1 239 6 0 229 5 6 29 18 19 204 0 1 265 0 23 41 0 1 26 2 1 48 4 1 122 chain 530258 chr8 146364022 + 77954098 77960534 L1PA5 6144 + 0 6141 4155 356 19 18 1939 2 0 852 280 11 333 0 1 1387 14 0 208 4 0 887 7 0 26 0 1 122 chain 23847 chr8 146364022 + 77957267 77957542 L1PA4 6152 + 5872 6152 111197 269 0 5 6 chain 3806 chr8 146364022 + 77972880 77972926 LTR80A 572 + 207 253 210300 46 chain 12777 chr8 146364022 + 77988178 77988336 L1PA8 5853 - 450 609 149148 22 1 2 135 chain 35362 chr8 146364022 + 77988336 77988794 L1PA8 5853 + 5402 5853 75715 162 1 0 47 2 0 68 1 0 9 1 0 52 2 1 19 1 0 93 chain 549704 chr8 146364022 + 78000647 78006680 L1PA2 6032 + 1 6030 1485 256 1 0 484 0 1 530 7 0 2463 0 1 82 0 1 2067 0 1 143 chain 19085 chr8 146364022 + 78017110 78017344 L1PA5 6144 - 19 243 129863 46 10 0 178 chain 112059 chr8 146364022 + 78017784 78019226 L1PA5 6144 + 3 1477 33646 115 7 20 21 0 12 554 10 8 5 0 1 75 1 18 337 9 0 308 chain 46172 chr8 146364022 + 78019259 78019791 L1PA5 6144 + 4311 4843 61872 532 chain 97812 chr8 146364022 + 78019791 78020922 L1PA5 6144 + 4844 5977 37329 450 1 0 511 0 1 164 0 2 5 chain 10744 chr8 146364022 + 78020941 78021088 L1PA5 6144 + 5988 6129 157222 66 0 1 28 7 0 46 chain 19698 chr8 146364022 + 78029691 78029910 AluYb8 318 + 105 318 128108 13 6 0 200 chain 5942 chr8 146364022 + 78054791 78054862 MER2 342 - 131 202 185762 71 chain 5396 chr8 146364022 + 78063777 78063840 MER5A1 166 - 49 112 191028 63 chain 26794 chr8 146364022 + 78097456 78097791 L1PB1 5432 - 329 664 96999 296 0 2 8 2 0 29 chain 41078 chr8 146364022 + 78097810 78098357 L1PB1 5432 + 4202 4750 67800 113 0 1 70 10 0 193 4 12 38 0 2 119 chain 26787 chr8 146364022 + 78102323 78102705 MLT2A1 477 + 0 385 97022 14 0 4 26 0 2 42 6 7 37 4 0 28 13 10 11 0 1 21 0 1 159 0 1 21 chain 213613 chr8 146364022 + 78113934 78116284 L1PA3long 6157 - 0 2350 18250 2350 chain 46296 chr8 146364022 + 78116286 78116801 L1PA3long 6157 + 3263 3777 61775 29 1 0 485 chain 11464 chr8 146364022 + 78164826 78165032 MER47A 366 + 123 330 154457 103 0 1 6 24 24 34 16 0 15 0 16 8 chain 324814 chr8 146364022 + 78186942 78190579 L1PA3long 6157 - 0 3638 12399 2213 10 0 8 0 10 1014 0 1 392 chain 45102 chr8 146364022 + 78191363 78192012 L1PREC2 3366 - 1844 2495 62931 200 60 58 154 0 1 105 0 3 130 chain 3533 chr8 146364022 + 78200027 78200170 MER52A 1651 + 806 914 214831 29 90 55 24 chain 69739 chr8 146364022 + 78215171 78215922 L1PA2 6032 + 5281 6032 48500 751 chain 23312 chr8 146364022 + 78244013 78244284 L1PA4 6152 - 18 289 114143 271 chain 5396 chr8 146364022 + 78266170 78266315 MLT1E1A 663 + 61 207 191030 25 27 29 19 31 30 43 chain 475375 chr8 146364022 + 78276051 78281882 L1PA5 6144 + 597 6130 7873 379 371 19 420 0 3 532 0 1 809 0 46 360 0 1 1149 0 1 976 0 1 695 0 1 140 chain 3819 chr8 146364022 + 78276458 78276502 L1PA5 6144 - 269 313 210100 44 chain 23330 chr8 146364022 + 78276502 78276770 L1PA4 6152 + 5875 6143 114026 268 chain 41212 chr8 146364022 + 78286090 78286581 MER9a1 513 + 0 513 67636 18 0 10 348 0 12 125 chain 42069 chr8 146364022 + 78294303 78294947 L1PB1 5432 + 4092 4689 66534 155 0 1 68 12 11 4 0 1 132 0 4 137 67 19 7 4 0 58 chain 48842 chr8 146364022 + 78294947 78295500 L1PA5 6144 - 4 558 59845 155 0 1 398 chain 39637 chr8 146364022 + 78347375 78347931 L1PBa 3878 - 101 646 69842 5 1 0 11 19 13 11 2 0 21 2 1 398 1 0 85 chain 4571 chr8 146364022 + 78362238 78362289 L1PA3long 6157 + 6102 6153 199991 51 chain 76167 chr8 146364022 + 78381124 78381994 L1PA3long 6157 - 4 871 45385 60 9 0 624 0 6 25 0 1 5 1 0 146 chain 29444 chr8 146364022 + 78385350 78385661 AluYa5 310 + 0 310 86880 132 1 0 178 chain 6826 chr8 146364022 + 78389133 78389298 L1MA3 4352 - 29 177 178744 6 1 0 29 14 12 18 40 26 57 chain 65528 chr8 146364022 + 78397586 78398863 L1PB1 5432 + 4414 5404 50327 215 3 6 70 1 3 314 0 1 71 274 20 20 1 0 12 1 0 11 17 11 52 2 1 15 1 0 15 14 5 20 5 4 5 0 1 11 13 0 27 5 3 4 1 0 15 2 0 24 1 0 21 1 0 13 chain 6005 chr8 146364022 + 78404678 78405055 MER31B 477 - 0 416 185203 13 2 0 5 6 5 12 1 0 22 35 52 46 129 103 17 35 60 15 24 51 15 chain 4750 chr8 146364022 + 78414769 78414822 MER41B 635 + 481 534 197918 53 chain 7268 chr8 146364022 + 78433241 78433336 MSTA-int 1630 - 9 105 175669 40 1 2 54 chain 32228 chr8 146364022 + 78474884 78475337 L1PREC2 3366 - 1082 1527 80473 77 1 0 175 6 7 16 9 10 43 10 1 116 chain 17528 chr8 146364022 + 78475346 78475686 L1PA13 3608 + 3231 3547 134187 41 0 1 62 7 6 49 8 6 22 1 0 25 2 0 5 2 0 34 0 4 11 21 10 11 1 0 6 7 1 10 4 1 11 chain 26732 chr8 146364022 + 78498144 78498459 AluY 311 + 0 309 97215 76 2 0 50 4 0 183 chain 297702 chr8 146364022 + 78514031 78517443 L1PA5 6144 - 0 3414 13540 111 0 1 16 0 2 1194 1 0 328 0 2 1084 2 0 676 chain 74738 chr8 146364022 + 78517453 78518302 L1P2 5180 + 1512 2361 46145 849 chain 7071 chr8 146364022 + 78521967 78522079 UCON16 145 - 3 113 176940 63 19 17 30 chain 3258 chr8 146364022 + 78545279 78545319 MER121 330 + 120 161 219807 19 0 1 21 chain 44196 chr8 146364022 + 78548345 78548888 L1PA7 6471 - 540 1081 63950 5 3 0 223 0 1 81 1 0 103 0 1 127 chain 40238 chr8 146364022 + 78548888 78549763 L1PA7 6471 + 5935 6466 68962 164 26 11 26 329 0 171 1 0 6 4 5 148 chain 62014 chr8 146364022 + 78557435 78558119 L1PA3long 6157 - 0 684 51893 684 chain 17466 chr8 146364022 + 78558119 78558310 L1PA3long 6157 + 5231 5421 134341 76 1 0 114 chain 3262 chr8 146364022 + 78597313 78597354 L1MCa 1829 + 806 847 219751 41 chain 57419 chr8 146364022 + 78602677 78603422 L1PB1 5432 + 4370 5116 54280 244 10 7 85 0 2 6 6 2 212 0 3 115 0 1 6 1 0 50 0 3 10 chain 195074 chr8 146364022 + 78606009 78608570 L1PA8A 6298 - 8 2595 19578 99 2 0 5 6 14 202 8 6 473 0 2 5 13 11 257 0 1 7 6 5 631 6 23 319 0 1 85 0 3 269 0 1 168 chain 77052 chr8 146364022 + 78612791 78614034 LTR12D 1347 + 0 1315 44941 111 1 2 24 0 1 44 98 101 24 95 26 62 0 1 42 0 150 111 14 7 143 1 0 101 3 2 68 4 0 29 3 2 31 1 0 233 chain 80669 chr8 146364022 + 78622122 78623106 L1PA7 6471 + 5473 6465 43318 141 0 2 594 0 5 165 0 1 84 chain 64495 chr8 146364022 + 78633538 78634326 L1PA7 6471 - 1 790 50804 12 0 2 4 0 1 152 1 2 591 3 0 25 chain 413307 chr8 146364022 + 78741961 78748047 L1PA8A 6298 + 35 6291 9717 5 1 0 16 1 0 10 3 0 5 2 0 6 6 0 19 8 5 18 196 166 23 1 0 9 19 11 21 7 1 14 1 2 38 2 0 13 21 18 56 20 19 267 0 1 28 4 0 137 3 0 6 1 4 22 0 1 66 2 4 57 0 6 23 20 26 57 6 1 236 0 1 165 0 20 229 22 21 10 1 0 105 7 9 114 49 48 335 0 1 351 5 6 396 24 25 68 4 191 38 0 1 112 5 0 86 0 1 15 16 17 61 0 1 170 3 11 125 13 12 41 0 1 64 0 2 87 0 2 47 1 0 8 0 1 26 0 2 13 2 0 56 5 6 130 0 4 91 0 1 45 6 0 10 25 25 423 4 3 185 0 3 13 6 5 79 1 5 518 2 4 91 12 13 90 chain 14657 chr8 146364022 + 78762355 78762516 L1PA2 6032 - 3 164 142401 161 chain 129524 chr8 146364022 + 78765063 78766778 L1PA8 5853 - 4 1851 28203 89 1 0 15 1 0 44 31 30 63 2 0 46 2 1 246 1 0 210 0 3 18 0 2 73 2 3 158 0 1 4 1 0 160 7 0 8 0 3 6 0 4 262 3 136 262 chain 31235 chr8 146364022 + 78773727 78774167 MER4A1 472 + 2 472 82103 12 0 2 5 1 2 10 4 3 195 14 33 129 0 9 70 chain 211388 chr8 146364022 + 78779429 78782216 L1PA8A 6298 + 3511 6291 18406 51 6 5 136 2 0 181 3 1 78 0 1 104 0 1 56 16 5 221 0 1 43 11 15 41 4 5 131 0 2 201 0 1 28 1 0 95 0 4 38 0 1 188 15 17 13 0 5 10 1 0 24 0 1 156 19 0 101 0 4 8 1 0 52 2 1 31 0 2 407 0 1 200 0 1 112 chain 204996 chr8 146364022 + 78790387 78792859 L1P1 4361 - 20 4357 18856 12 2 1 23 1 0 155 1 0 383 1 0 59 0 1867 6 1 0 499 0 1 258 1 7 303 0 1 236 4 0 245 1 0 281 chain 23998 chr8 146364022 + 78796421 78796706 AluSc 308 - 13 296 110340 164 2 0 119 chain 31196 chr8 146364022 + 78798461 78798856 L1PREC2 3366 - 630 1025 82169 395 chain 10922 chr8 146364022 + 78802188 78802326 L1PA2 6032 - 11 156 156519 130 0 7 8 chain 28906 chr8 146364022 + 78805733 78806082 L1PA7 6471 + 6108 6466 89433 28 0 11 312 2 0 7 chain 109462 chr8 146364022 + 78828223 78829445 L1PA4 6152 - 73 1295 34326 1222 chain 61722 chr8 146364022 + 78829448 78830137 L1PA4 6152 + 4166 4857 52028 36 0 2 653 chain 33930 chr8 146364022 + 78851033 78851458 THE1B-int 1605 - 1181 1605 77729 237 5 4 183 chain 543012 chr8 146364022 + 78852748 78858761 L1PA2 6032 + 4 6029 2340 252 1 0 572 0 4 88 0 2 1342 0 4 863 2 1 817 0 1 1659 0 1 271 0 1 48 0 4 83 3 0 12 chain 4957 chr8 146364022 + 78876153 78876208 MLT1A 405 - 125 180 195610 55 chain 29026 chr8 146364022 + 78885388 78885728 L1PA7 6471 + 6132 6468 88866 329 4 0 7 chain 501181 chr8 146364022 + 78885995 78892095 L1PA6 6164 - 2 6164 6777 396 0 1 283 8 17 149 0 1 4 0 3 663 0 2 341 0 2 124 3 1 211 0 1 83 0 1 349 0 1 253 0 2 50 2 1 7 0 1 821 0 9 52 7 0 268 0 1 84 0 1 70 0 1 397 1 2 545 1 2 40 1 0 4 0 1 108 1 18 224 1 0 48 0 2 278 0 2 36 14 28 173 chain 190603 chr8 146364022 + 78966652 78968761 L1PA4 6152 - 12 2120 19990 302 1 0 1806 chain 13045 chr8 146364022 + 78976365 78976591 MER1A 529 - 5 229 148054 58 50 43 18 0 4 46 0 1 54 chain 16090 chr8 146364022 + 78976621 78976860 MER1A 529 + 296 525 138088 125 3 0 34 20 13 57 chain 96021 chr8 146364022 + 79015747 79016969 L1PA8 5853 - 0 1218 37815 92 2 1 19 2 1 47 1 0 14 2 1 70 2 0 44 1 0 212 12 10 328 0 5 374 chain 33584 chr8 146364022 + 79059928 79060473 LTR12 884 + 0 873 78268 60 6 47 8 1 0 24 11 0 45 5 4 62 1 0 15 3 94 17 2 0 5 24 0 203 0 236 53 chain 268288 chr8 146364022 + 79060505 79063796 HERV9-int 5642 + 0 3411 15276 711 11 5 79 1 0 53 2 0 54 40 125 76 1 0 4 8 4 19 5 4 149 0 2 576 0 37 572 0 2 264 7 8 171 0 8 101 1 0 375 0 1 11 chain 29778 chr8 146364022 + 79067913 79068300 MLT2A1 477 + 0 383 85549 169 4 1 5 0 1 5 2 0 202 chain 377345 chr8 146364022 + 79068344 79074741 HERVL-int 5654 + 2 5654 10836 8 0 1 151 4 0 191 0 1 282 0 1 11 5 6 83 8 9 120 0 5 96 18 7 58 0 1 87 1 2 136 0 28 355 0 4 4 1 0 75 0 1 171 28 33 239 5 6 83 12 13 191 17 8 307 0 2 232 0 3 10 9 6 33 0 1 120 51 601 521 0 1 420 6 7 65 1352 0 101 1 4 193 1 2 108 0 1 18 7 4 69 0 18 55 1 2 129 6 10 142 chain 29151 chr8 146364022 + 79073524 79073839 L1PA3long 6157 + 5842 6157 88311 315 chain 29899 chr8 146364022 + 79074741 79075145 MLT2A1 477 + 0 395 85105 169 4 1 9 2 0 206 4 0 10 chain 18005 chr8 146364022 + 79084134 79084346 L1PA4 6152 + 5925 6139 132844 76 0 1 34 4 5 98 chain 295728 chr8 146364022 + 79095973 79099685 HERVL-int 5654 - 1887 5654 13660 256 0 1 341 8 9 25 0 1 149 0 1 40 0 1 92 0 26 620 0 1 276 1 2 319 0 4 69 3 18 663 0 1 109 12 11 45 0 1 36 1 2 11 0 1 636 chain 152895 chr8 146364022 + 79104222 79105939 L1PA4 6152 - 21 1744 24242 34 0 4 798 0 1 250 0 1 635 chain 90469 chr8 146364022 + 79114095 79115596 L1PB1 5432 + 3901 5389 39476 210 0 2 58 1 0 56 0 1 235 6 17 28 3 1 118 3 0 177 12 11 150 131 140 33 26 20 9 2 0 52 7 6 12 1 0 44 1 0 15 54 39 13 2 0 22 1 0 19 chain 24572 chr8 146364022 + 79184138 79184493 THE1C 375 - 20 375 107126 5 1 0 146 16 20 53 9 6 125 chain 69325 chr8 146364022 + 79211562 79212460 L1PA8 5853 + 4964 5853 48668 45 2 0 512 0 1 40 1 0 48 2 0 12 1 0 53 5 4 9 1 0 52 2 1 19 1 0 93 chain 58900 chr8 146364022 + 79241043 79241826 LTR12 884 - 0 884 53456 440 9 11 57 2 0 155 0 66 38 0 41 39 10 5 7 1 0 25 chain 3782 chr8 146364022 + 79259527 79259579 L1ME1 1623 + 1240 1291 210632 10 1 0 41 chain 554996 chr8 146364022 + 79262748 79268895 L1PA3long 6157 + 4 6157 827 307 1 0 171 0 8 294 0 1 1101 1 0 1082 1 0 1026 0 1 5 2 1 801 1 0 79 0 1 1275 chain 103538 chr8 146364022 + 79293329 79294501 L1PA4 6152 - 9 1187 35856 50 0 1 70 0 1 719 0 4 333 chain 29753 chr8 146364022 + 79340010 79340324 AluYb8 318 + 0 313 85638 132 1 0 181 chain 71671 chr8 146364022 + 79347450 79348381 L1PB1 5432 - 763 1704 47617 43 2 0 8 5 9 162 1 2 107 1 0 186 9 14 129 1 0 66 0 3 162 0 1 49 chain 43869 chr8 146364022 + 79348381 79349210 L1PB1 5432 + 4686 5427 64304 117 3 4 181 11 9 17 4 6 80 69 14 20 1 0 8 5 4 12 16 10 52 5 4 12 1 0 44 67 51 15 2 0 24 1 0 21 1 0 13 1 0 8 1 0 10 2 0 5 chain 76984 chr8 146364022 + 79351001 79351968 LTR5_Hs 974 + 0 974 44975 190 6 0 229 7 0 39 3 7 151 0 15 85 0 2 58 7 7 128 1 0 63 chain 45288 chr8 146364022 + 79352012 79352509 L1PA2 6032 + 5535 6032 62731 497 chain 516299 chr8 146364022 + 79357120 79363225 L1PA5 6144 + 0 6132 5547 121 0 14 21 0 12 774 1 5 63 1 0 159 9 0 18 0 1 364 1 3 281 1 2 1433 5 6 656 0 1 227 2 0 398 0 1 294 0 1 8 3 1 430 1 4 684 8 7 114 0 1 28 chain 3535 chr8 146364022 + 79371775 79371814 L1MA6 2487 + 2340 2379 214778 39 chain 78806 chr8 146364022 + 79382449 79383498 MER11A 1151 + 0 1147 44144 79 7 15 136 1 0 64 0 11 83 0 1 144 0 13 14 5 4 118 6 9 12 1 2 38 0 4 69 0 1 17 1 59 101 0 1 90 4 3 59 chain 87864 chr8 146364022 + 79413896 79414924 L1PA7 6471 - 1173 2202 40395 256 0 1 772 chain 98374 chr8 146364022 + 79414924 79416087 L1PA7 6471 + 5298 6463 37200 51 1 0 297 1 2 52 0 2 621 0 1 5 2 1 133 chain 9966 chr8 146364022 + 79462906 79463155 L1PB1 5432 - 2 223 160743 8 2 0 7 1 0 11 1 0 13 5 4 17 1 0 20 21 18 5 2 0 30 18 4 12 1 0 45 5 4 11 2 1 11 chain 12949 chr8 146364022 + 79489344 79489488 L1PA5 6144 - 2 146 148435 144 chain 21084 chr8 146364022 + 79500468 79500723 AluSp 311 + 35 290 123603 255 chain 3951 chr8 146364022 + 79549932 79550121 MLT1B 390 + 154 346 208119 13 5 25 13 114 97 44 chain 4755 chr8 146364022 + 79565438 79565817 HERVK14C-int 762 + 563 759 197859 5 2 0 50 299 118 23 chain 49267 chr8 146364022 + 79566333 79566911 LTR14C 587 + 9 587 59538 578 chain 58982 chr8 146364022 + 79585146 79585863 L1PA8 5853 - 0 710 53409 92 2 1 19 2 1 52 1 0 9 1 0 70 2 0 45 1 0 421 chain 35813 chr8 146364022 + 79590043 79590488 MER41A 554 - 87 531 75114 306 7 6 132 chain 120599 chr8 146364022 + 79604966 79606338 L1PA4 6152 - 0 1371 30842 12 4 1 8 0 1 91 6 7 1251 chain 202378 chr8 146364022 + 79613159 79616334 L1PA13 3608 - 165 3042 19029 45 48 45 18 1 0 61 2 0 113 2 1 32 1 0 95 1 0 136 1 0 148 19 22 121 7 10 128 0 15 32 0 1 119 0 3 229 0 3 20 1 0 10 0 1 5 1 0 48 0 1 39 0 2 42 5 9 130 0 1 34 0 1 48 6 7 191 0 1 16 318 0 41 3 7 82 3 1 213 0 3 6 9 1 127 0 2 48 6 3 78 0 2 44 21 17 155 2 0 64 chain 13398 chr8 146364022 + 79621856 79622025 MER30 238 - 2 192 146728 115 0 21 54 chain 109929 chr8 146364022 + 79664836 79666194 L1PA7 6471 - 1 1389 34232 4 1 0 32 0 6 401 0 2 64 0 10 272 0 8 57 1 0 212 0 2 104 2 1 122 0 5 86 chain 57707 chr8 146364022 + 79666200 79666886 L1PA7 6471 + 4376 5071 54130 198 1 0 4 0 1 87 0 8 173 0 1 223 chain 20757 chr8 146364022 + 79670012 79670376 THE1B 368 + 0 368 124770 169 95 99 100 chain 92573 chr8 146364022 + 79680008 79681026 L1PA3long 6157 - 0 1019 38766 147 0 1 871 chain 125382 chr8 146364022 + 79681026 79682409 L1PA3long 6157 + 3751 5135 29283 195 0 1 1188 chain 286082 chr8 146364022 + 79690914 79694925 L1PA10 4194 - 35 4019 14283 9 1 0 28 9 6 219 0 1 6 0 1 8 1 0 232 0 6 24 4 5 645 5 6 213 11 13 54 7 11 40 4 5 743 0 1 46 0 4 101 0 10 416 10 11 5 1 0 82 1 0 5 0 1 40 1 0 274 2 1 21 0 6 142 1 3 161 0 1 26 2 5 21 0 1 10 4 2 84 20 9 15 1 0 6 1 0 11 1 0 10 1 0 5 17 15 20 1 0 7 37 12 10 1 0 13 5 3 18 62 49 15 4 0 11 chain 66755 chr8 146364022 + 79734951 79735853 THE1C-int 1605 + 1 970 49753 118 1 55 271 0 7 36 13 16 65 0 1 7 2 0 116 17 21 256 chain 137465 chr8 146364022 + 79747925 79749624 L1PA7 6471 + 4748 6457 26565 583 0 1 288 3 0 5 4 7 69 0 2 602 0 18 74 12 1 59 chain 324939 chr8 146364022 + 79783856 79788198 L1PA8A 6298 - 8 4375 12393 22 0 1 78 2 1 38 0 1 40 10 6 95 0 1 589 1 0 8 1 2 203 3 5 578 0 1 190 0 1 383 9 10 152 38 19 95 3 2 220 9 8 75 1 6 9 0 1 21 0 3 5 17 14 15 14 0 607 0 1 168 0 46 7 1 0 53 12 0 103 42 55 16 0 15 147 19 8 243 chain 15526 chr8 146364022 + 79792478 79792730 Tigger3a 397 - 76 389 139813 179 48 109 25 chain 20203 chr8 146364022 + 79814206 79814424 L1PA3long 6157 + 5938 6157 126523 76 0 1 142 chain 142805 chr8 146364022 + 79837399 79839043 L1P2 5180 - 1657 3305 25628 161 0 2 171 1 0 12 1 3 349 0 1 949 chain 159023 chr8 146364022 + 79839043 79840819 L1PA5 6144 + 4355 6137 23458 142 0 3 792 0 2 695 0 1 147 chain 3946 chr8 146364022 + 79848152 79848234 L1MA9 1812 - 166 245 208175 20 20 18 28 1 0 13 chain 8590 chr8 146364022 + 79850992 79851103 THE1C 375 + 161 271 167788 20 1 0 90 chain 76368 chr8 146364022 + 79862485 79863408 L1PA7 6471 - 1094 2021 45088 225 4 5 55 4 7 231 0 1 4 9 8 391 chain 90252 chr8 146364022 + 79863408 79864503 L1PA7 6471 + 5365 6461 39558 174 0 2 80 1 0 510 1 0 41 1 2 287 chain 2800 chr8 146364022 + 79869376 79869412 L1PA5 6144 + 5960 5996 228723 36 chain 13323 chr8 146364022 + 79869412 79869559 L1PA5 6144 + 5997 6144 146995 147 chain 3718 chr8 146364022 + 79873225 79873279 MLT1C 463 + 394 448 211661 27 0 2 5 2 0 20 chain 55233 chr8 146364022 + 79877933 79878553 L1PA4 6152 + 5530 6151 55567 613 0 1 7 chain 32395 chr8 146364022 + 79892557 79892908 L1PA3long 6157 + 5806 6157 80204 351 chain 6578 chr8 146364022 + 79894803 79895048 MER74A 558 + 29 321 180632 43 152 199 50 chain 8734 chr8 146364022 + 79906504 79906693 L1MB3 1562 + 1392 1553 167005 27 1 0 6 46 18 20 2 1 33 0 3 24 1 0 29 chain 57378 chr8 146364022 + 79910871 79911584 L1PA7 6471 - 1 709 54298 168 3 0 51 9 7 482 chain 22413 chr8 146364022 + 79944363 79944648 L1PA4 6152 + 5855 6152 118420 125 21 28 133 0 5 6 chain 62050 chr8 146364022 + 79944819 79945877 MER11B 1079 + 0 1051 51877 425 14 13 19 18 17 22 24 12 15 0 1 12 8 10 10 14 13 87 14 17 21 10 17 7 1 0 12 21 11 17 39 43 16 8 9 49 5 6 170 chain 20280 chr8 146364022 + 79974863 79975158 L1PA8 5853 + 5565 5853 126276 44 2 0 70 1 0 8 19 17 39 1 0 16 2 1 93 chain 80961 chr8 146364022 + 79981909 79982971 MER11C 1089 + 0 1063 43210 241 5 14 62 0 4 65 1 0 303 2 6 42 1 2 5 0 1 96 21 4 218 chain 5087 chr8 146364022 + 80006337 80006444 MER58A 224 + 3 108 194216 14 34 32 59 chain 91945 chr8 146364022 + 80022777 80024029 HSMAR1 1287 - 3 1287 38984 47 5 12 484 1 0 127 9 19 22 7 8 9 2 0 172 7 20 58 26 30 276 chain 5293 chr8 146364022 + 80026440 80026503 L1PA6 6164 - 3820 3884 190400 10 0 1 53 chain 319180 chr8 146364022 + 80026503 80030301 L1PA6 6164 + 2334 6156 12629 193 0 6 583 0 1 31 0 5 37 0 1 10 0 1 62 0 1 347 8 13 78 1 0 63 3 4 505 0 3 54 0 1 694 1 2 797 1 0 163 16 24 7 8 0 136 chain 38631 chr8 146364022 + 80031991 80032549 LTR10B1 532 + 0 532 71252 174 8 0 16 14 0 12 2 0 29 19 17 284 chain 13412 chr8 146364022 + 80039098 80039252 L1PA7 6471 + 6314 6468 146666 154 chain 60709 chr8 146364022 + 80054926 80055616 L1PA4 6152 - 0 691 52467 339 0 1 351 chain 14421 chr8 146364022 + 80055616 80055782 L1PA4 6152 + 5289 5455 143146 166 chain 8561 chr8 146364022 + 80056205 80056307 L1PA8 5853 + 5752 5853 167957 8 1 0 93 chain 13174 chr8 146364022 + 80062178 80062365 MSTB1-int 1597 + 1 190 147570 39 14 16 134 chain 68146 chr8 146364022 + 80079456 80080253 L1PA4 6152 - 0 774 49183 6 0 5 102 0 1 406 35 6 248 chain 155845 chr8 146364022 + 80083995 80085657 L1HS 6032 - 0 1662 23876 1662 chain 88975 chr8 146364022 + 80085657 80086638 L1P1 4361 + 2407 3388 39980 981 chain 12007 chr8 146364022 + 80090618 80090959 L1PB1 5432 - 9 318 152169 5 1 0 14 15 13 21 1 0 24 70 53 12 1 0 45 1 0 10 14 13 41 22 16 12 3 2 4 1 0 24 chain 31329 chr8 146364022 + 80093073 80093416 L1PA5 6144 + 5789 6132 81935 343 chain 23515 chr8 146364022 + 80094556 80094851 THE1C-int 1605 + 1311 1605 113043 126 1 0 168 chain 4433 chr8 146364022 + 80106086 80106138 LTR56 451 - 382 434 201544 52 chain 10400 chr8 146364022 + 80115574 80115706 L1P1 4361 + 28 174 158690 108 8 22 16 chain 54085 chr8 146364022 + 80115713 80116319 L1PA4 6152 + 5545 6145 56301 591 6 0 9 chain 134034 chr8 146364022 + 80134481 80136085 L1PA6 6164 - 1913 3529 27200 339 0 6 165 0 2 36 1 0 403 1 0 23 0 3 84 0 1 4 2 3 215 0 1 331 chain 38721 chr8 146364022 + 80136085 80136573 L1PA6 6164 + 4271 4754 71015 378 1 0 64 8 4 37 chain 88496 chr8 146364022 + 80136573 80137615 L1PA6 6164 + 4755 5805 40186 577 0 8 465 chain 3171 chr8 146364022 + 80137615 80137650 L1PA6 6164 + 5806 5841 221536 35 chain 23483 chr8 146364022 + 80137651 80137975 L1PA6 6164 + 5841 6159 113202 162 9 10 139 7 0 7 chain 122354 chr8 146364022 + 80170232 80171640 L1P2 5180 + 2083 3508 30266 334 0 16 738 2 0 44 1 0 65 0 4 224 chain 29637 chr8 146364022 + 80173526 80173860 L1PA6 6164 + 5491 5825 86103 334 chain 9442 chr8 146364022 + 80173860 80173966 L1PA6 6164 + 5826 5932 163351 106 chain 18611 chr8 146364022 + 80173967 80174191 L1PA6 6164 + 5934 6159 131185 76 0 1 148 chain 70467 chr8 146364022 + 80179292 80180135 L1PA7 6471 - 6 847 48136 145 1 0 190 1 0 506 chain 88616 chr8 146364022 + 80180135 80181181 L1PA7 6471 + 4565 5615 40138 23 0 1 224 0 4 449 1 0 349 chain 115328 chr8 146364022 + 80184692 80185971 L1PA3long 6157 - 0 1288 32671 4 0 1 46 0 4 88 2 0 6 0 1 529 0 1 169 0 4 435 chain 33189 chr8 146364022 + 80213184 80213570 L1PA4 6152 + 5767 6143 78910 187 10 0 189 chain 103702 chr8 146364022 + 80215547 80216767 LTR12C 1709 + 0 1709 35801 677 0 485 62 0 4 190 2 1 186 0 1 103 chain 36867 chr8 146364022 + 80247644 80248461 L1PB1 5432 + 4793 5427 73700 17 1 0 193 0 1 96 171 14 33 1 0 10 21 15 36 1 0 12 2 1 14 1 0 42 4 3 15 26 13 19 2 0 5 17 14 23 2 1 11 7 14 9 1 0 18 2 0 5 chain 23048 chr8 146364022 + 80266698 80266954 L1PA4 6152 - 781 1037 115403 256 chain 67473 chr8 146364022 + 80266955 80267727 L1PA4 6152 + 5357 6152 49461 622 1 21 136 0 3 13 chain 4610 chr8 146364022 + 80268163 80268230 L1MB5 1630 - 12 106 199508 4 1 0 13 1 0 41 0 29 7 chain 3442 chr8 146364022 + 80269139 80269364 MLT1F 544 + 283 521 216333 18 46 52 19 110 117 32 chain 3561 chr8 146364022 + 80279193 80279233 L1PA6 6164 + 6114 6154 214306 40 chain 188673 chr8 146364022 + 80283164 80285371 L1PA6 6164 + 3925 6162 20176 530 0 1 139 0 9 667 2 1 379 0 11 111 0 10 379 chain 112181 chr8 146364022 + 80288621 80290022 LTR12C 1709 - 0 1706 33616 198 0 4 143 2 1 91 0 5 39 0 4 107 9 325 300 1 0 417 5 0 12 18 1 59 chain 28001 chr8 146364022 + 80298349 80298774 LTR7Y 441 - 11 441 92998 48 1 0 117 1 0 21 68 84 57 9 0 103 chain 284672 chr8 146364022 + 80300035 80303485 HERVH-int 3825 - 0 3825 14374 225 3 8 143 1 4 6 3 0 101 8 218 973 1 0 70 0 2 359 8 35 126 1 0 113 0 1 660 0 3 13 0 2 6 0 1 59 1 0 21 7 45 13 1 0 14 30 0 20 0 118 196 7 5 22 0 4 239 chain 29845 chr8 146364022 + 80303485 80303920 LTR7Y 441 - 0 441 85300 59 1 0 150 56 72 57 9 0 103 chain 5818 chr8 146364022 + 80318320 80318389 L1PA5 6144 - 4 73 186977 69 chain 18368 chr8 146364022 + 80327022 80327329 THE1B 368 - 61 366 131883 37 44 38 18 10 15 30 1 0 167 chain 12412 chr8 146364022 + 80356799 80356962 L1PB4 2604 - 52 214 150589 135 1 0 27 chain 10133 chr8 146364022 + 80366428 80366570 THE1C 375 - 237 375 159934 29 7 3 106 chain 33481 chr8 146364022 + 80378686 80379122 MER4A1 472 + 0 472 78438 66 0 12 8 0 1 137 9 31 187 1 2 28 chain 139302 chr8 146364022 + 80405829 80407842 L1PB1 5432 - 10 3227 26247 18 1 0 13 5 4 17 1 0 24 2 0 14 1 0 5 3 1 18 22 12 15 1 0 45 1 0 17 1 0 51 2 0 7 29 23 21 39 23 12 0 3 275 1 0 7 0 1 49 0 26 13 1 0 82 2 0 13 0 4 118 0 3 42 0 1 239 1 0 116 0 1217 31 1 0 12 5 4 290 9 8 24 0 2 297 chain 29528 chr8 146364022 + 80416257 80416689 MLT2A1 477 + 0 477 86535 149 0 4 15 5 2 9 0 1 24 0 1 22 4 13 139 0 1 5 4 0 6 13 49 37 chain 116945 chr8 146364022 + 80428316 80429664 L1PA6 6164 - 8 1364 32144 1080 0 8 268 chain 3919 chr8 146364022 + 80439029 80439079 MIR 256 - 45 95 208556 50 chain 518787 chr8 146364022 + 80443760 80450134 L1PA7 6471 - 1 6471 5294 33 0 4 657 0 28 75 0 1 51 1 0 379 1 2 283 0 2 637 0 1 71 5 3 17 0 16 284 0 1 117 18 24 18 2 5 160 0 2 130 0 1 734 0 1 83 0 1 8 10 0 504 4 5 12 0 2 666 17 0 31 0 18 40 0 2 116 6 10 244 0 29 33 1 2 268 1 0 7 0 1 243 1 2 406 chain 48554 chr8 146364022 + 80464282 80465057 L1PB3 3668 + 1856 2635 60073 15 10 7 19 0 3 8 37 51 74 87 74 234 0 2 108 0 1 183 chain 60393 chr8 146364022 + 80467901 80468633 L1PA7 6471 - 1 762 52635 380 0 1 313 0 28 39 chain 2320 chr8 146364022 + 80468634 80468662 L1PA7 6471 - 1768 1796 235122 28 chain 370286 chr8 146364022 + 80468662 80473370 L1PA7 6471 - 1800 6471 11085 1064 0 1 60 23 20 885 26 0 1231 0 3 51 5 15 438 14 14 29 0 6 7 13 7 436 28 7 152 67 66 179 chain 79042 chr8 146364022 + 80475615 80476615 L1PA8 5853 + 4853 5853 44033 156 0 2 54 3 7 280 0 1 211 1 0 45 2 0 69 2 1 8 2 1 52 2 1 19 2 1 92 chain 7442 chr8 146364022 + 80499833 80499916 L1PA2 6032 - 2 85 174499 83 chain 8040 chr8 146364022 + 80499916 80500000 L1PA2 6032 + 5794 5878 170816 84 chain 6685 chr8 146364022 + 80500000 80500080 L1PA3long 6157 + 6006 6086 179791 80 chain 73597 chr8 146364022 + 80506384 80507413 L1PB2 3958 + 2821 3838 46732 84 0 3 17 4 2 120 0 4 62 0 1 193 2 0 56 1 0 14 11 6 54 3 1 13 4 0 94 1 0 73 1 0 49 4 6 8 1 0 59 6 0 9 0 4 21 2 1 63 chain 20794 chr8 146364022 + 80573327 80573615 L1PB2 3958 - 186 484 124629 19 9 7 67 1 0 25 0 14 22 1 0 23 0 1 49 1 0 71 chain 11582 chr8 146364022 + 80586710 80586877 THE1B 368 + 135 306 153966 34 1 0 29 0 3 6 3 7 18 1 0 10 1 0 64 chain 42856 chr8 146364022 + 80591159 80591637 L1PA5 6144 - 16 494 65591 478 chain 157260 chr8 146364022 + 80591638 80593390 L1PA5 6144 + 3884 5636 23693 1752 chain 15372 chr8 146364022 + 80600161 80600370 MER107 203 + 1 203 140287 152 0 1 4 12 1 17 0 3 24 chain 19458 chr8 146364022 + 80616179 80616540 THE1D 372 - 0 372 128793 126 39 40 12 28 34 28 0 4 15 10 9 19 7 8 77 chain 293190 chr8 146364022 + 80622857 80626427 L1PA7 6471 + 2874 6469 13808 204 0 1 8 0 13 282 0 1 47 0 3 51 1 2 4 1 0 41 1 2 79 2 0 385 25 18 242 0 1 21 2 0 117 0 1 88 1 2 217 0 7 244 1 0 126 1 2 6 0 6 507 0 4 8 1 0 517 1 0 112 0 1 215 2 0 10 chain 4900 chr8 146364022 + 80628399 80628456 MER45A 178 - 52 109 196271 57 chain 3634 chr8 146364022 + 80650433 80650552 MER3 215 + 66 203 213063 24 1 69 11 3 0 3 48 0 25 0 1 4 chain 4094 chr8 146364022 + 80719039 80719103 MLT1B 390 + 21 82 206023 6 2 0 28 1 0 27 chain 21887 chr8 146364022 + 80758166 80758434 L1PA10 4194 + 2337 2605 120679 268 chain 184508 chr8 146364022 + 80772632 80774694 L1PA5 6144 - 5 2065 20544 12 2 0 840 1 0 686 0 1 521 chain 55626 chr8 146364022 + 80810538 80811170 L1PA7 6471 + 5831 6463 55348 632 chain 204197 chr8 146364022 + 80832050 80834329 L1PA4 6152 - 16 2315 18911 97 0 1 25 0 7 564 1 0 140 0 4 331 1 0 616 0 8 451 0 2 53 chain 558336 chr8 146364022 + 80894511 80900667 L1PA3long 6157 + 1 6157 467 710 7 0 3252 0 2 1587 0 5 600 chain 520078 chr8 146364022 + 80915755 80921666 L1PA5 6144 + 3 6139 5149 170 1 11 1848 5 7 717 1 4 18 0 2 124 0 210 2321 1 0 450 1 0 254 chain 4635 chr8 146364022 + 80930174 80930233 L1MA3 4352 + 3339 3396 199243 48 2 0 9 chain 34398 chr8 146364022 + 80932148 80932687 MER4B 649 - 72 649 77059 31 0 1 92 51 32 62 0 15 143 11 57 5 3 0 109 1 0 6 1 0 24 chain 14935 chr8 146364022 + 80953350 80953538 L1PA7 6471 + 6285 6470 141520 13 2 0 154 1 0 18 chain 39831 chr8 146364022 + 81017427 81017891 LTR2 463 + 0 463 69577 61 0 3 167 5 0 137 0 1 94 chain 5886 chr8 146364022 + 81022750 81022813 L1PA3long 6157 + 6093 6156 186325 63 chain 29382 chr8 146364022 + 81034629 81035035 MER51D 577 + 153 571 87161 99 0 18 45 5 9 60 3 0 90 2 0 24 3 0 10 1 0 28 2 1 34 chain 56348 chr8 146364022 + 81047770 81048377 L1PA2 6032 + 5422 6029 54935 607 chain 19926 chr8 146364022 + 81061339 81061681 THE1B 368 + 0 338 127372 138 0 4 27 1 0 5 75 68 96 chain 110202 chr8 146364022 + 81061726 81063201 THE1B-int 1605 + 18 1600 34158 13 1 0 107 17 35 65 0 3 59 0 6 12 7 5 72 0 64 34 0 13 81 10 6 23 24 23 383 0 1 160 0 1 84 0 9 323 chain 17926 chr8 146364022 + 81063207 81063484 THE1B 368 + 1 280 133040 114 0 11 5 11 0 38 1 0 32 0 1 5 3 7 18 1 0 7 5 4 37 chain 28908 chr8 146364022 + 81070894 81071206 AluYa5 310 + 0 309 89424 70 3 0 239 chain 128340 chr8 146364022 + 81143861 81146089 LTR12C 1709 + 0 1709 28486 438 0 1 68 6 5 325 1 0 15 197 0 260 1 0 4 4 2 106 0 4 173 4 0 18 1 103 22 1 0 20 9 38 4 0 1 24 449 0 78 chain 11387 chr8 146364022 + 81144714 81144892 LTR12C 1709 + 893 1112 107167 83 0 41 95 chain 2019 chr8 146364022 + 81145583 81145604 LTR12C 1709 + 1419 1440 238429 21 chain 24318 chr8 146364022 + 81207529 81207838 AluSq10 312 - 3 312 108557 122 13 13 174 chain 21727 chr8 146364022 + 81208796 81209122 L1PA8 5853 + 5528 5847 121294 36 1 0 44 2 0 71 1 0 9 18 17 35 2 1 13 9 8 85 chain 20221 chr8 146364022 + 81214461 81214723 AluSg7 307 + 10 271 126470 113 5 3 24 1 2 119 chain 42211 chr8 146364022 + 81224161 81224769 Tigger3b 1229 + 286 914 66386 10 1 0 13 5 6 14 7 6 32 0 1 4 0 1 194 3 13 36 0 4 37 0 6 30 1 3 75 3 0 143 chain 15416 chr8 146364022 + 81246318 81246539 MER30 238 + 4 238 140148 108 3 19 52 10 7 48 chain 129358 chr8 146364022 + 81256873 81258596 L1PB1 5432 - 151 1874 28231 44 1 0 18 1 0 51 18 12 12 1 0 6 1 0 21 16 14 52 1 0 54 1 2 177 3 4 184 4 1 194 0 1 241 0 1 437 0 12 185 chain 26771 chr8 146364022 + 81262435 81262732 AluYk4 311 - 4 301 97084 297 chain 14418 chr8 146364022 + 81266290 81266493 AluY 311 + 84 289 143156 49 14 11 72 0 5 68 chain 23154 chr8 146364022 + 81271472 81271761 AluSx1 309 + 9 297 114878 124 1 0 164 chain 5412 chr8 146364022 + 81281140 81281204 MER58D 378 + 306 370 190877 64 chain 222851 chr8 146364022 + 81296231 81298687 L1PA3long 6157 - 0 2472 17716 148 0 2 572 0 5 127 0 3 418 0 1 234 0 5 957 chain 24548 chr8 146364022 + 81309052 81309345 AluSp 311 + 0 292 107263 39 1 0 253 chain 7367 chr8 146364022 + 81344767 81344918 MER51B 395 - 0 149 175000 34 17 1 34 23 37 43 chain 30390 chr8 146364022 + 81345673 81346019 L1PA5 6144 - 0 346 83699 346 chain 28476 chr8 146364022 + 81376604 81376902 AluYf4 310 + 0 298 91285 298 chain 21559 chr8 146364022 + 81380342 81380589 AluY 311 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2907 3589 63899 15 1 0 29 0 1 23 8 9 6 1 0 210 6 5 85 2 0 54 53 60 173 3 0 12 chain 3628 chr8 146364022 + 81619793 81619872 MADE2 80 + 0 78 213188 23 27 26 29 chain 23485 chr8 146364022 + 81648516 81648791 AluSc5 308 - 16 287 113195 6 4 0 265 chain 7512 chr8 146364022 + 81648882 81649072 L1PB1 5432 + 5255 5423 174079 26 1 0 15 2 0 6 17 7 17 33 28 16 2 1 21 1 0 12 1 0 14 1 0 5 chain 246797 chr8 146364022 + 81651950 81654780 HERV17-int 4347 + 1519 4347 16409 37 0 1 561 4 0 1029 3 1 176 2 1 90 0 2 196 0 1 6 1 0 227 0 2 498 chain 27311 chr8 146364022 + 81655099 81655427 LTR17 781 + 1 326 95237 66 0 1 123 4 0 15 0 1 7 1 0 112 chain 3059 chr8 146364022 + 81658504 81658539 U5 65 - 21 56 223826 35 chain 25692 chr8 146364022 + 81672965 81673318 MSTA 426 - 50 419 101320 17 9 19 47 3 10 153 1 0 123 chain 6573 chr8 146364022 + 81681596 81681698 THE1B 368 - 0 94 180674 18 3 0 5 9 4 67 chain 32468 chr8 146364022 + 81681699 81682093 THE1B-int 1605 - 1210 1605 80081 272 0 1 122 chain 15539 chr8 146364022 + 81710793 81711001 MSTC-int 1625 - 1402 1608 139774 103 2 1 34 1 0 68 chain 341843 chr8 146364022 + 81711873 81716402 L1PA11 4918 + 3 4501 11840 39 2 0 36 4 1 36 1 0 13 2 0 53 1 0 32 14 8 17 1 2 29 4 3 71 2 0 5 5 7 403 6 14 111 0 1 559 15 8 168 0 1 156 1 0 34 0 1 280 13 5 107 1 0 4 0 1 56 10 9 226 3 4 24 1 2 11 12 0 175 4 0 375 0 1 105 0 1 139 3 0 96 0 1 38 0 2 37 4 7 9 1 0 161 2 5 356 1 2 209 1 0 35 0 2 32 9 8 57 2 1 13 3 0 65 2 0 16 1 0 4 0 3 6 chain 70345 chr8 146364022 + 81734361 81735193 L1PA5 6144 - 4 910 48244 138 0 6 3 7 0 94 0 76 83 1 0 506 chain 447236 chr8 146364022 + 81735200 81740415 L1PA5 6144 + 0 5233 8839 16 2 0 104 2 16 20 0 12 845 1 0 141 0 3 12 9 0 401 0 3 740 2 1 862 1 0 306 0 4 863 0 4 248 0 1 26 1 0 477 8 0 128 chain 35112 chr8 146364022 + 81746763 81747215 L1PA8 5853 - 0 444 76035 88 6 5 19 2 1 42 1 2 5 3 0 9 1 0 72 2 0 46 1 0 155 chain 9613 chr8 146364022 + 81752569 81752678 MER30 238 + 129 238 162519 109 chain 25218 chr8 146364022 + 81763392 81763682 L1PA4 6152 + 5577 5866 103646 241 1 0 48 chain 26238 chr8 146364022 + 81763684 81763969 L1PA4 6152 + 5866 6151 99058 285 chain 23412 chr8 146364022 + 81809527 81809880 THE1B 368 - 2 368 113582 54 7 6 66 35 50 21 1 0 169 chain 18130 chr8 146364022 + 81848863 81849100 AluSc 308 - 17 254 132519 5 2 0 11 1 3 218 chain 6596 chr8 146364022 + 81856265 81856348 MSTB2 466 - 23 107 180484 21 0 1 62 chain 27588 chr8 146364022 + 81857121 81857475 THE1A 353 + 0 353 94387 109 2 1 243 chain 124082 chr8 146364022 + 81857475 81859052 THE1A-int 1579 + 0 1579 29675 15 0 2 389 19 19 73 1 0 518 4 5 139 0 1 77 1 0 341 chain 27261 chr8 146364022 + 81859052 81859406 THE1A 353 + 0 353 95398 89 1 0 20 2 1 110 2 3 130 chain 28108 chr8 146364022 + 81860729 81861094 THE1B 368 + 0 368 92616 15 2 0 25 0 5 124 1 0 31 0 2 91 1 0 75 chain 111335 chr8 146364022 + 81865114 81866747 L1PA7 6471 + 5114 6454 33850 328 0 4 88 5 6 84 6 5 29 301 0 42 1 4 616 2 3 131 chain 16255 chr8 146364022 + 81867496 81867668 L1PA4 6152 + 5726 5898 137591 172 chain 22637 chr8 146364022 + 81867669 81867921 L1PA4 6152 + 5898 6151 117390 98 1 2 153 chain 64523 chr8 146364022 + 81967718 81968426 L1PA5 6144 - 1526 2234 50615 708 chain 136288 chr8 146364022 + 81968426 81969958 L1PA5 6144 + 4604 6141 26784 612 1 2 689 0 4 230 chain 12441 chr8 146364022 + 82003633 82003870 Tigger3a 397 - 22 343 150491 22 20 23 129 46 127 20 chain 12380 chr8 146364022 + 82057122 82057262 AluYc 301 + 161 301 150708 140 chain 454800 chr8 146364022 + 82077588 82083579 L1PA7 6471 + 1 6469 8588 157 0 1 4 26 9 38 0 1 192 27 40 31 1 0 141 1 0 53 50 47 104 1 0 967 0 1 356 8 1 5 0 2 110 1 0 152 6 0 10 5 8 28 0 779 211 10 2 383 0 2 173 1 0 5 269 0 28 15 10 505 5 8 98 8 0 322 3 1 635 1 0 9 0 1 67 0 2 769 chain 6403 chr8 146364022 + 82093396 82093477 MLT1F 544 - 459 540 181999 81 chain 41684 chr8 146364022 + 82108188 82108720 MER41A 554 + 0 554 67046 36 0 14 415 1 8 11 0 1 69 chain 21810 chr8 146364022 + 82108872 82109298 MER4E 760 + 338 755 120982 22 2 4 18 99 97 50 1 0 6 16 8 212 chain 517291 chr8 146364022 + 82111519 82117759 L1PA5 6144 - 0 6129 5449 242 14 8 326 0 2 304 0 7 43 2 1 582 2 1 280 19 4 315 2 0 346 0 2 75 118 0 50 0 1 8 0 1 291 0 1 4 1 0 714 0 1 1109 1 0 231 3 0 5 0 3 18 9 0 107 0 1 187 4 5 691 7 19 25 1 15 104 chain 146589 chr8 146364022 + 82131798 82133947 L1PB1 5432 - 30 2148 25073 9 1 0 23 1 0 22 66 48 4 1 0 16 2 1 43 1 0 15 2 1 51 3 1 9 2 0 3 2 0 9 2 1 9 1 0 22 9 0 12 18 5 53 1 8 20 0 2 5 2 0 13 6 5 13 12 16 147 1 9 180 2 0 49 1 2 550 0 1 55 7 8 237 0 4 437 chain 47521 chr8 146364022 + 82154697 82155263 HERVL-int 5654 - 5088 5654 60827 566 chain 31448 chr8 146364022 + 82155263 82155681 MLT2A1 477 - 0 477 81737 22 0 1 26 4 44 60 1 0 42 0 1 108 1 5 29 0 1 31 0 11 46 0 2 48 chain 23454 chr8 146364022 + 82215128 82215408 AluYc3 301 + 0 281 113360 56 1 2 55 1 2 15 1 0 151 chain 258044 chr8 146364022 + 82219164 82222602 L1PBa 3878 + 216 3748 15806 17 0 1 290 1 0 105 0 80 59 5 4 33 0 4 25 16 20 51 0 6 156 1 4 77 8 13 30 1 0 431 2 0 80 0 1 105 0 6 558 1 0 4 0 1 11 0 1 39 6 3 36 0 1 7 0 5 225 0 3 324 1 0 18 7 0 72 12 8 33 1 0 57 3 0 235 0 1 83 1 0 103 0 1 71 1 0 23 2 0 11 chain 8455 chr8 146364022 + 82227358 82227766 LTR56 451 - 33 436 168535 6 5 0 35 105 119 52 110 91 24 21 27 29 9 8 12 chain 545211 chr8 146364022 + 82238089 82244113 L1PA3long 6157 - 1 6157 2046 1485 1 0 984 0 1 2121 0 2 659 0 128 397 1 2 224 1 2 151 chain 63754 chr8 146364022 + 82278097 82279062 L1PA15 4387 - 62 995 51121 10 3 1 44 6 3 50 2 1 8 4 0 23 1 0 55 1 0 27 1 0 18 24 0 26 3 0 57 0 6 64 1 0 40 16 13 54 0 1 4 7 9 101 0 1 168 0 2 147 chain 16400 chr8 146364022 + 82303457 82303639 L1PA7 6471 + 5439 5621 137209 182 chain 69081 chr8 146364022 + 82303640 82304462 L1PA7 6471 + 5625 6451 48772 73 0 2 388 0 1 208 1 2 5 1 0 44 0 1 102 chain 3690 chr8 146364022 + 82314465 82314510 MIR 256 + 80 126 212075 10 0 1 35 chain 10491 chr8 146364022 + 82330734 82330939 Tigger3a 397 - 48 258 158284 43 9 41 10 9 8 9 28 0 79 1 3 17 chain 2862 chr8 146364022 + 82338806 82338838 MIR 256 - 42 74 227642 32 chain 5556 chr8 146364022 + 82339151 82339437 L1PB1 5432 - 23 254 22215 4 0 1 13 1 0 6 0 1 3 1 0 11 1 0 13 7 0 6 0 5 14 9 6 17 8 0 9 2 0 5 2 1 12 1 0 45 54 17 42 chain 543378 chr8 146364022 + 82339448 82345464 L1PA3long 6157 + 0 6157 2284 152 0 1 544 0 7 72 0 128 2791 0 1 719 0 2 1510 0 2 228 chain 45807 chr8 146364022 + 82345470 82347828 L1PB1 5432 - 254 2589 22215 10 2 0 9 5 1 14 1 0 6 1 0 24 5 0 8 5 8 82 0 2 35 1 0 137 0 1 35 4 1 23 60 23 52 1 0 81 3 0 291 2 0 30 3 2 236 11 16 92 1 0 170 0 14 43 5 7 248 1 8 195 0 1 274 0 1 5 1 0 64 0 4 82 chain 35227 chr8 146364022 + 82377673 82378110 L1PA8 5853 - 0 432 75890 112 3 2 51 1 0 8 1 0 70 2 0 46 1 0 127 0 1 15 chain 50596 chr8 146364022 + 82381914 82382575 PABL_A 660 - 0 660 58581 382 1 2 132 1 0 17 1 0 52 2 7 6 5 0 62 chain 5336 chr8 146364022 + 82382586 82382660 MER21A 919 - 768 830 191682 27 12 0 35 chain 7128 chr8 146364022 + 82384162 82384259 L1MB3 1562 - 1460 1556 176557 82 1 0 14 chain 36641 chr8 146364022 + 82405986 82406787 MER4A1 472 - 0 472 74040 89 325 0 89 2 0 50 3 1 243 chain 12677 chr8 146364022 + 82466942 82467118 MER30 238 - 4 192 149548 107 12 24 57 chain 28215 chr8 146364022 + 82480074 82480380 AluYb8 318 + 0 304 92254 132 2 0 172 chain 277305 chr8 146364022 + 82484232 82488008 L1PB1 5432 - 28 3775 14790 13 9 8 13 1 0 24 2 0 14 8 5 14 8 0 13 3 0 4 1 0 16 1 0 43 23 21 41 35 28 9 1 0 24 1 0 5 7 6 48 4 5 66 0 1 6 1 0 200 3 4 38 0 3 111 7 4 7 0 1 88 33 37 35 1 0 60 0 1 8 1 0 374 1 0 218 0 3 48 16 12 65 1 0 156 13 15 481 6 5 12 0 2 133 0 1 20 0 1 298 0 1 35 3 0 81 3 0 762 chain 33424 chr8 146364022 + 82499965 82500478 MLT2A2 560 - 0 560 78527 54 8 4 89 3 14 59 0 32 60 46 56 12 1 0 42 2 1 137 chain 25707 chr8 146364022 + 82507060 82507439 MER4A 717 + 8 387 101260 64 2 0 51 3 1 113 3 16 77 14 5 52 chain 43997 chr8 146364022 + 82512439 82513073 LTR6A 649 + 1 634 64209 60 33 31 13 2 1 24 15 13 65 0 3 165 9 10 54 0 1 148 1 0 45 chain 26140 chr8 146364022 + 82528028 82528351 L1PA10 4194 - 33 352 99442 11 1 0 34 3 0 274 chain 4940 chr8 146364022 + 82542517 82542575 MER21A 919 - 833 890 195802 39 1 0 18 chain 10552 chr8 146364022 + 82549397 82549584 L1MA3 4352 + 40 217 158038 26 30 26 57 0 1 5 2 0 20 5 0 42 chain 14366 chr8 146364022 + 82576952 82577112 L1PA3long 6157 + 5997 6157 143327 160 chain 41970 chr8 146364022 + 82585172 82585823 MER4A 717 + 0 717 66658 43 0 1 77 1 2 4 1 0 78 2 1 52 3 15 95 1 41 11 1 5 60 14 5 25 0 13 23 9 13 79 6 7 23 0 1 30 0 1 6 1 0 6 chain 3109 chr8 146364022 + 82599428 82599486 MIRb 242 - 117 174 222757 35 11 10 12 chain 28335 chr8 146364022 + 82610003 82611497 HSMAR2 1300 + 457 1299 91818 127 45 5 156 23 24 90 1009 391 13 3 8 28 chain 8668 chr8 146364022 + 82645314 82645569 MER96B 391 - 113 352 167378 4 1 0 46 92 78 21 3 2 63 4 5 5 1 0 15 chain 71362 chr8 146364022 + 82659851 82660823 MER11C 1089 - 26 1089 47763 25 0 1 84 13 88 127 0 1 38 1 0 4 1 5 112 30 29 163 1 0 65 0 4 61 0 9 247 chain 4267 chr8 146364022 + 82662246 82662327 THE1-int 844 + 3 81 203669 17 2 1 15 7 6 15 1 0 24 chain 551699 chr8 146364022 + 82680451 82686477 L1PA2 6032 + 2 6032 1224 72 0 1 182 1 0 47 0 4 2644 1 0 2929 1 2 149 chain 31873 chr8 146364022 + 82705753 82706157 L1PA7 6471 - 14 402 81058 169 18 1 60 3 1 146 0 3 8 chain 35919 chr8 146364022 + 82710201 82710614 L1PA7 6471 + 6057 6469 74990 82 1 0 330 chain 23858 chr8 146364022 + 82717880 82718174 AluY 311 + 8 300 111135 115 1 0 153 3 2 22 chain 19981 chr8 146364022 + 82746261 82746601 THE1B 368 - 0 368 127205 10 2 3 14 1 3 93 31 43 4 1 0 14 13 12 113 0 15 44 chain 99863 chr8 146364022 + 82746601 82747974 THE1B-int 1605 - 0 1408 36817 137 0 2 208 22 18 56 16 12 13 8 22 121 5 6 496 1 0 4 0 1 52 0 25 157 13 14 64 chain 3171 chr8 146364022 + 82747974 82748013 THE1B 368 - 61 100 219971 39 chain 2048 chr8 146364022 + 82748013 82748037 THE1B 368 - 101 125 238216 24 chain 8145 chr8 146364022 + 82748066 82748174 THE1B 368 - 167 271 170261 7 3 0 21 1 0 76 chain 5307 chr8 146364022 + 82748185 82748246 THE1B-int 1605 - 122 183 191949 61 chain 3166 chr8 146364022 + 82755751 82755788 MER51A 677 - 442 479 221639 37 chain 206902 chr8 146364022 + 82761990 82764416 L1PA6 6164 + 3729 6162 18727 264 4 3 70 0 1 183 1 0 1062 0 4 117 5 0 71 0 3 272 0 7 218 1 0 116 0 1 37 1 0 4 chain 6178 chr8 146364022 + 82764563 82764745 MER51A 677 + 461 661 183762 21 59 58 28 5 9 10 11 26 48 chain 54708 chr8 146364022 + 82807944 82808722 MER4E1 777 + 0 771 55894 25 7 6 142 2 1 5 0 1 13 0 13 7 14 1 57 1 3 271 2 0 5 22 16 39 1 0 43 2 3 120 chain 25048 chr8 146364022 + 82810252 82810630 LTR7 482 - 0 482 104551 115 1 2 28 1 0 29 0 1 15 8 38 29 0 1 60 13 63 7 1 0 47 1 24 23 chain 15514 chr8 146364022 + 82812473 82812660 HERVH-int 3825 - 0 188 139843 181 0 1 6 chain 23458 chr8 146364022 + 82815809 82816178 LTR7 482 - 7 482 113329 167 0 1 29 1 32 16 12 13 53 13 63 42 13 36 23 chain 53380 chr8 146364022 + 82816755 82817420 LTR12_ 688 + 0 665 56780 95 4 3 117 0 1 213 0 3 7 3 0 226 chain 22859 chr8 146364022 + 82819251 82819516 L1PA6 6164 + 5836 6102 116293 172 0 1 93 chain 4530 chr8 146364022 + 82819521 82819569 L1PA6 6164 + 6108 6156 200447 48 chain 47344 chr8 146364022 + 82820671 82821242 L1PA8A 6298 + 5442 6036 60940 51 0 5 124 0 18 396 chain 40203 chr8 146364022 + 82823478 82823990 LTR10A 586 - 21 536 69025 282 1 2 64 14 15 24 0 1 127 chain 235314 chr8 146364022 + 82826813 82829933 HERVH-int 3825 + 588 3825 17010 16 5 156 20 1 0 86 0 1 35 0 1 323 48 21 182 9 0 41 1 0 113 23 20 4 1 0 79 1 6 261 7 19 84 35 40 704 11 0 215 1 0 277 10 6 128 10 16 6 6 0 377 chain 9935 chr8 146364022 + 82832848 82832966 MER50 708 + 564 682 160900 118 chain 4230 chr8 146364022 + 82847932 82847986 Tigger5 388 + 301 356 204181 50 0 1 4 chain 520113 chr8 146364022 + 82897324 82903475 L1PA6 6164 - 2 6164 5147 336 1 0 79 0 7 63 0 1 1980 1 0 60 0 1 425 0 1 24 1 2 1029 2 0 1101 0 8 223 1 0 212 0 1 71 0 1 23 15 14 45 6 10 42 16 15 9 0 8 32 15 0 339 chain 23705 chr8 146364022 + 82926834 82927113 AluSp 311 - 9 288 112004 279 chain 17196 chr8 146364022 + 82939993 82940200 MER4D0 881 + 673 881 135048 199 0 1 8 chain 7417 chr8 146364022 + 82967141 82967238 MER30 238 + 143 237 174671 47 3 0 47 chain 96841 chr8 146364022 + 82975810 82977777 L1PB1 5432 + 3739 5061 37601 312 6 6 298 0 3 73 1 0 4 0 1 10 334 0 182 3 0 160 349 39 22 12 10 56 1 2 144 chain 4490 chr8 146364022 + 83000618 83000693 MADE1 96 + 2 93 200903 44 9 25 22 chain 58296 chr8 146364022 + 83002995 83003920 LTR12 884 - 0 884 53808 119 0 8 106 4 106 166 2 1 16 18 26 258 157 0 45 9 8 25 chain 7281 chr8 146364022 + 83003684 83003816 LTR12 884 - 674 806 122895 132 chain 39489 chr8 146364022 + 83015427 83015972 MLT2A2 560 + 2 560 70032 126 5 6 161 18 19 85 3 14 147 chain 31320 chr8 146364022 + 83019621 83019987 L1PA7 6471 - 14 380 81956 366 chain 9116 chr8 146364022 + 83021299 83021399 L1PA5 6144 + 6034 6134 164983 100 chain 13547 chr8 146364022 + 83025037 83025205 LOR1b 457 - 0 168 146180 168 chain 41442 chr8 146364022 + 83039210 83039747 LTR19B 566 + 9 566 67355 41 6 1 52 0 1 188 0 20 120 0 2 60 0 5 15 3 0 15 1 0 4 0 1 32 chain 304176 chr8 146364022 + 83055670 83059247 L1PA5 6144 - 0 3643 13234 331 1 3 516 1 0 145 0 1 403 2 62 380 0 1 20 0 2 121 0 1 24 1 0 461 1 2 169 1 0 472 0 1 528 chain 64811 chr8 146364022 + 83059247 83060042 L1PA5 6144 + 1581 2366 50510 489 13 5 42 1 0 196 4 3 50 chain 2799 chr8 146364022 + 83065085 83065413 L1MC1 2226 - 134 443 228733 9 5 0 20 3 0 6 261 250 24 chain 219260 chr8 146364022 + 83080833 83083532 L1PA8 5853 - 0 2707 17930 93 1 0 16 1 0 45 22 21 70 2 0 44 2 0 480 0 2 126 0 1 4 1 0 217 2 0 335 1 0 336 0 1 8 0 4 325 0 1 9 0 4 220 0 1 96 0 4 191 0 1 52 chain 17868 chr8 146364022 + 83104058 83104282 LTR12C 1709 - 832 1055 133200 40 1 0 183 chain 4413 chr8 146364022 + 83104306 83104355 LTR12C 1709 - 641 690 201763 49 chain 29246 chr8 146364022 + 83116744 83117097 THE1A 353 - 0 353 87818 243 1 0 55 0 1 54 chain 43453 chr8 146364022 + 83118460 83119011 LTR14 556 + 0 556 64865 85 0 2 327 10 11 11 9 10 13 0 1 96 chain 25535 chr8 146364022 + 83135642 83135946 AluYk4 311 + 0 297 102080 132 8 1 164 chain 26053 chr8 146364022 + 83137979 83138252 AluYa5 310 + 37 310 99817 273 chain 110185 chr8 146364022 + 83141239 83142721 THE1B-int 1605 + 65 1605 34163 36 8 11 314 0 25 341 19 20 220 20 35 88 0 13 203 11 12 222 chain 26197 chr8 146364022 + 83142721 83143075 THE1B 368 + 0 368 99217 33 7 22 111 7 6 196 chain 20240 chr8 146364022 + 83190368 83190656 L1MA1 4479 - 2415 2702 126412 13 0 3 75 1 0 17 13 8 98 7 9 64 chain 8337 chr8 146364022 + 83192434 83192535 MER85 139 + 33 134 169189 101 chain 10320 chr8 146364022 + 83195389 83195593 L1PA8 5853 + 5650 5853 159031 28 2 1 9 52 53 19 1 0 93 chain 222875 chr8 146364022 + 83200592 83205242 L1PB1 5432 - 12 3163 17715 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 15 21 12 4 1 0 15 1 0 43 2 1 16 2 1 40 0 3 9 2 0 6 34 19 5 1 0 23 5 0 7 0 5 50 12 12 225 1 4 14 4 3 169 3 0 58 0 1 90 10 14 235 2 4 9 1 0 46 1 0 142 1 2 56 7 8 229 3 6 164 1 0 4 1 2 314 1 0 123 0 7 214 1481 0 56 1 0 148 8 10 58 12 14 61 1 5 18 3 4 29 1 0 7 11 7 212 chain 20022 chr8 146364022 + 83223396 83223629 L1PA5 6144 - 12 252 127077 141 0 7 92 chain 57329 chr8 146364022 + 83227258 83227957 L1PA7 6471 - 2 700 54321 10 2 0 320 1 2 366 chain 20150 chr8 146364022 + 83227957 83228218 L1PA7 6471 + 5493 5761 126675 145 7 8 35 0 4 13 0 2 61 chain 131256 chr8 146364022 + 83234341 83235832 L1PA4 6152 + 4655 6152 27807 327 0 1 546 0 1 288 2 1 79 1 0 127 5 6 110 0 5 6 chain 22909 chr8 146364022 + 83268139 83268412 AluY 311 + 28 303 116065 104 0 1 144 4 5 21 chain 12369 chr8 146364022 + 83275317 83275511 THE1B 368 - 0 194 150757 40 1 0 21 4 6 10 3 0 96 7 9 12 chain 69975 chr8 146364022 + 83275531 83276429 L1PA7 6471 - 1 889 48401 58 0 2 123 18 17 44 11 1 6 0 1 5 1 0 592 1 0 39 chain 72454 chr8 146364022 + 83303315 83304110 L1PA3long 6157 - 5 800 47283 795 chain 27183 chr8 146364022 + 83332697 83332984 AluYb8 318 - 16 303 95651 287 chain 115364 chr8 146364022 + 83353475 83355064 LTR12C 1709 + 0 1709 32655 263 1 2 13 5 1 11 0 6 42 10 53 73 8 7 103 1 0 131 17 134 38 1 0 50 5 0 185 1 0 5 3 1 97 44 13 53 7 4 7 0 3 332 1 0 82 chain 30276 chr8 146364022 + 83370229 83370635 L1PA8 5853 - 0 401 84009 93 1 0 19 2 1 51 1 0 10 3 2 69 2 0 44 1 0 79 0 2 31 chain 10883 chr8 146364022 + 83378546 83378888 L1PB1 5432 - 10 316 156645 18 1 0 12 1 0 22 52 46 16 18 8 6 1 0 14 4 3 41 21 19 7 6 0 38 9 7 7 4 0 14 8 6 22 chain 2897 chr8 146364022 + 83379472 83379505 L1PB 1623 + 231 264 227080 33 chain 16366 chr8 146364022 + 83380223 83380488 L1PB 1623 + 1264 1525 137294 7 0 1 34 1 3 19 0 4 114 1 0 7 2 1 30 1 0 5 3 0 13 4 0 13 1 0 10 chain 3320 chr8 146364022 + 83388262 83388302 L1MB1 2102 + 1699 1739 218570 40 chain 119176 chr8 146364022 + 83394067 83395422 L1PA5 6144 - 0 1354 31343 857 1 0 497 chain 212823 chr8 146364022 + 83396157 83398549 L1PA4 6152 + 3756 6151 18304 182 0 1 1380 1 2 490 0 1 339 chain 65340 chr8 146364022 + 83401729 83402552 L1PA7 6471 - 5 825 50404 7 2 0 429 18 17 367 chain 28629 chr8 146364022 + 83402552 83402912 L1PA7 6471 + 5300 5659 90610 321 1 0 38 chain 20416 chr8 146364022 + 83409869 83410248 THE1C 375 + 0 375 125851 15 2 0 41 33 35 16 12 13 64 10 11 33 18 14 77 1 0 31 1 0 25 chain 181682 chr8 146364022 + 83420089 83422105 L1PA3long 6157 - 0 2256 20825 698 4 243 315 0 1 999 chain 18992 chr8 146364022 + 83422105 83422319 L1PA3long 6157 + 3665 3878 129083 2 1 0 211 chain 11666 chr8 146364022 + 83429348 83429474 L1PA2 6032 + 5906 6032 153615 126 chain 511902 chr8 146364022 + 83442317 83449062 L1PA7 6471 - 14 6467 5988 837 1 2 639 7 6 24 1 0 950 6 0 100 0 1 110 0 1 223 11 15 91 2 9 104 1 3 321 0 1 379 5 0 73 1 2 262 285 0 388 0 1 61 0 1 5 1 0 492 1 0 24 0 1 72 7 0 556 8 6 262 59 42 82 0 1 51 14 17 44 18 34 11 16 9 140 chain 4115 chr8 146364022 + 83477990 83478051 L1MA8 2339 + 2207 2265 205702 25 2 0 25 1 0 8 chain 2620 chr8 146364022 + 83480234 83480285 L1MC5 759 - 364 416 231423 14 8 9 29 chain 60857 chr8 146364022 + 83494335 83495026 L1PA4 6152 - 3557 4250 52363 644 3 5 44 chain 316846 chr8 146364022 + 83495026 83498552 L1PA4 6152 + 2602 6132 12732 2057 1 0 645 0 4 700 0 1 123 chain 5850 chr8 146364022 + 83552053 83552134 LTR17 781 - 455 526 186684 26 10 0 45 chain 14765 chr8 146364022 + 83554455 83554710 AluSc8 310 + 10 270 142046 121 13 14 6 0 3 45 42 43 28 chain 14953 chr8 146364022 + 83567899 83568074 L1PA3long 6157 - 1 176 141467 175 chain 76891 chr8 146364022 + 83613510 83614396 L1PA5 6144 - 4 889 45034 672 0 1 180 2 0 32 chain 8220 chr8 146364022 + 83614396 83614492 L1P1 4361 + 4233 4328 169362 72 1 0 23 chain 17905 chr8 146364022 + 83640682 83640883 L1PA2 6032 + 5831 6031 133088 4 1 0 196 chain 23979 chr8 146364022 + 83675170 83675471 AluSp 311 - 6 301 110451 27 7 1 267 chain 19798 chr8 146364022 + 83697486 83697698 L1PA3long 6157 - 288 500 127821 212 chain 6921 chr8 146364022 + 83704636 83704722 L1PA8 5853 + 5760 5846 178021 86 chain 38521 chr8 146364022 + 83706118 83706605 L1PA6 6164 + 5662 6145 71409 176 0 1 135 13 6 96 13 15 54 chain 5171 chr8 146364022 + 83720740 83720812 L1MB1 2102 - 95 165 193339 65 2 0 5 chain 7757 chr8 146364022 + 83726769 83727124 L1MA4 2864 - 63 388 172558 35 2 0 20 172 145 30 14 15 6 1 0 41 21 20 13 chain 18568 chr8 146364022 + 83787318 83787529 AluY 311 + 92 304 131310 40 0 1 171 chain 15161 chr8 146364022 + 83793396 83793629 LTR12C 1709 + 778 1108 140876 59 1 0 42 10 51 47 1 42 49 2 17 6 0 1 16 chain 4100 chr8 146364022 + 83793629 83793677 LTR12C 1709 + 670 718 190350 48 chain 178759 chr8 146364022 + 83808501 83811067 L1PB1 5432 - 19 2534 21102 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 10 46 36 39 24 22 53 17 11 4 0 1 4 1 0 13 1 0 8 29 27 46 16 16 196 31 26 7 0 4 181 0 2 12 6 10 293 0 1 57 0 1 57 6 7 190 27 1 256 7 0 196 6 10 279 5 4 349 chain 87843 chr8 146364022 + 83811067 83812233 L1PB1 5432 + 1737 2906 40292 759 4 5 117 1 2 193 28 29 64 chain 27093 chr8 146364022 + 83834804 83835158 THE1A 353 - 0 353 95963 243 6 5 105 chain 25780 chr8 146364022 + 83886781 83887157 MER4A1 472 - 14 435 100967 98 0 1 64 4 44 10 10 15 67 1 0 9 1 0 4 4 5 104 chain 5258 chr8 146364022 + 83888469 83888531 L1MC2 1988 - 219 281 192428 62 chain 28750 chr8 146364022 + 83923308 83923625 AluYb8 318 + 0 308 90124 297 9 0 11 chain 11557 chr8 146364022 + 83933679 83933971 THE1B 368 - 69 368 154076 59 0 8 18 133 132 82 chain 71411 chr8 146364022 + 83955966 83956800 L1PA5 6144 - 0 830 47743 6 4 0 107 1 0 59 3 4 654 chain 84765 chr8 146364022 + 83983471 83984551 MER11B 1079 - 0 1079 41610 19 0 1 4 1 2 135 7 8 140 8 2 122 0 1 46 8 7 328 3 0 39 0 5 220 chain 178971 chr8 146364022 + 84005902 84008221 L1PA7 6471 + 4243 6464 21074 31 2 0 268 117 0 182 1 0 90 14 13 23 0 4 125 0 1 279 1 0 362 1 0 231 0 3 453 17 24 65 0 12 50 2 0 5 chain 16115 chr8 146364022 + 84008221 84008427 HSMAR1 1287 - 1065 1271 138009 206 chain 24482 chr8 146364022 + 84021808 84022099 L1PA5 6144 + 5852 6142 107646 39 2 1 250 chain 266099 chr8 146364022 + 84026949 84030122 L1PA5 6144 - 12 3170 15386 121 5 4 17 0 2 497 0 1 424 5 1 326 0 1 141 1 0 48 15 0 61 0 12 803 0 3 253 9 8 243 0 2 5 15 0 111 5 6 68 chain 50249 chr8 146364022 + 84051748 84052507 LTR12_ 688 - 0 688 58828 165 97 0 35 0 1 228 10 11 65 23 22 18 0 25 118 chain 3917 chr8 146364022 + 84061736 84061779 MADE1 96 - 53 96 208591 43 chain 14385 chr8 146364022 + 84063231 84063481 MLT2A2 560 + 0 249 143255 168 60 59 22 chain 22116 chr8 146364022 + 84070820 84071087 AluSc5 308 - 42 307 119722 164 2 0 101 chain 4116 chr8 146364022 + 84084159 84084205 MER53 195 + 144 190 205693 46 chain 6950 chr8 146364022 + 84127359 84127466 L1P4d 1608 + 17 122 177810 11 1 0 10 7 6 78 chain 244161 chr8 146364022 + 84142727 84145502 L1PA4 6152 - 2 2776 16551 94 0 2 76 0 2 682 8 1 785 3 0 582 0 1 87 0 4 458 chain 89896 chr8 146364022 + 84145502 84146543 L1PA4 6152 + 2345 3377 39591 152 7 8 661 5 0 183 5 0 28 chain 20071 chr8 146364022 + 84169753 84170022 AluY 311 + 27 297 126914 105 23 24 141 chain 361071 chr8 146364022 + 84179356 84183609 L1PA5 6144 + 1621 6138 11338 191 1 2 543 5 6 468 0 232 620 6 5 136 0 1 1368 0 11 89 1 5 427 0 10 155 1 2 97 0 3 9 0 1 136 chain 23599 chr8 146364022 + 84184869 84185148 L1PA5 6144 - 16 299 112593 41 0 5 197 1 0 40 chain 29365 chr8 146364022 + 84192382 84192734 L1PA7 6471 - 13 365 87220 352 chain 105841 chr8 146364022 + 84192734 84194027 L1P1 4361 + 2812 4108 35298 407 0 2 688 0 1 198 chain 4296 chr8 146364022 + 84203066 84203162 LTR12E 1234 + 773 828 203294 30 41 0 25 chain 2844 chr8 146364022 + 84216959 84217112 L2a 937 + 184 327 227944 19 108 98 26 chain 5345 chr8 146364022 + 84226853 84226931 MADE1 96 + 2 96 191592 28 3 19 47 chain 35265 chr8 146364022 + 84230999 84231517 LTR12 884 - 101 884 75838 20 5 141 232 15 13 21 1 26 168 9 116 21 1 0 25 chain 414075 chr8 146364022 + 84233714 84239363 L1PA7 6471 + 4 6463 9696 25 1 3 309 1 0 69 17 5 385 1 0 304 26 193 6 0 7 52 10 11 20 0 3 34 26 28 133 0 1 176 2 6 260 8 9 536 17 20 33 0 2 66 0 1 124 0 3 251 1 0 4 4 5 12 1 5 25 1 0 104 0 28 83 4 5 40 0 1 112 1 0 273 7 10 43 3 0 180 3 0 178 0 1 69 0 1 34 5 4 346 0 2 25 1 5 99 0 1 22 0 3 6 3 0 251 130 7 208 2 3 43 0 8 9 8 0 157 1 0 108 14 727 137 chain 6893 chr8 146364022 + 84238585 84238669 L1PA7 6471 - 8 91 178233 5 1 0 78 chain 29220 chr8 146364022 + 84246427 84246789 L1PA8A 6298 - 303 665 87955 362 chain 44145 chr8 146364022 + 84252774 84253262 L1PA3long 6157 - 1579 2067 64020 488 chain 142815 chr8 146364022 + 84253262 84254836 L1PA3long 6157 + 4583 6157 25683 1574 chain 16837 chr8 146364022 + 84269748 84270342 HUERS-P1-int 2401 - 1709 2200 136025 10 2 0 78 15 14 18 2 0 23 14 6 8 2 0 5 1 0 18 22 8 23 2 0 8 1 0 15 6 0 16 27 23 25 170 117 34 15 9 29 1 0 4 chain 104144 chr8 146364022 + 84314992 84316286 LTR12C 1709 + 0 1709 35708 125 0 1 156 9 5 22 0 1 4 1 0 154 5 1 323 9 325 66 2 1 32 8 12 168 0 102 105 4 5 101 chain 53318 chr8 146364022 + 84347268 84347849 L1PA3long 6157 + 5576 6157 56820 581 chain 196033 chr8 146364022 + 84351482 84353596 L1PA2 6032 - 1 2116 19496 1493 0 1 621 chain 23079 chr8 146364022 + 84357145 84357443 AluSp 311 + 10 300 115250 244 8 0 46 chain 554571 chr8 146364022 + 84359377 84365404 L1PA2 6032 + 1 6027 875 316 2 0 82 1 0 640 0 3 2976 0 1 2000 2 0 8 chain 38190 chr8 146364022 + 84396760 84397263 LTR12_ 688 + 0 673 71848 24 0 1 52 6 72 235 0 103 186 chain 167514 chr8 146364022 + 84405908 84407971 L1PA5 6144 - 4 1982 22317 13 7 1 134 5 0 5 1 6 689 1 0 54 83 1 423 4 5 74 0 3 570 chain 174789 chr8 146364022 + 84407971 84410033 L1PA5 6144 + 2118 4157 21497 75 0 2 109 0 1 194 0 4 114 22 3 374 0 1 163 1 0 18 1 0 880 10 0 101 chain 274787 chr8 146364022 + 84419146 84422754 HERVH-int 3825 - 0 3825 14936 87 0 63 75 0 2 149 1 4 6 3 0 101 10 220 37 9 11 92 5 5 88 0 2 137 0 1 678 1 2 40 0 10 299 4 31 205 1 0 5 1 0 696 1 0 17 0 1 43 28 48 14 1 0 4 25 2 19 49 0 12 1 0 15 49 1 14 4 0 9 2 1 8 2 1 24 0 1 4 1 0 11 1 0 197 2 1 105 4 15 212 chain 22641 chr8 146364022 + 84423155 84423447 L1PBa 3878 - 1600 1892 117366 48 8 7 43 0 1 193 chain 119663 chr8 146364022 + 84445228 84446537 L1PA2 6032 - 0 1406 31158 1041 0 97 268 chain 33240 chr8 146364022 + 84465333 84465757 THE1C-int 1605 - 1161 1583 78816 111 0 6 222 9 0 60 0 1 22 chain 18751 chr8 146364022 + 84508127 84508331 L1PA4 6152 - 159 363 130820 204 chain 13677 chr8 146364022 + 84508331 84508487 L1PA4 6152 + 5998 6151 145679 138 3 0 15 chain 470918 chr8 146364022 + 84513963 84519803 L1PA6 6164 + 4 6162 8004 186 5 6 40 0 2 280 2 9 40 1 0 115 0 1 367 0 1 39 8 11 314 0 1 30 1 0 879 12 0 736 14 313 203 0 1 116 0 1 231 7 8 43 0 5 13 5 2 44 0 1 437 3 0 6 5 8 8 0 3 1050 0 3 29 0 2 109 0 1 133 0 1 134 0 1 195 chain 8951 chr8 146364022 + 84523064 84523191 LTR12C 1709 - 814 1059 165870 58 4 122 65 chain 503552 chr8 146364022 + 84529549 84535690 L1PA5 6144 - 16 6144 6631 297 0 1 719 0 1 150 1 0 126 0 1 1167 0 2 409 0 2 95 4 3 134 0 1 263 0 1 386 0 2 47 9 8 862 0 1 8 0 1 224 58 0 47 9 0 82 0 1 83 0 1 168 0 17 116 1 0 524 7 19 25 1 15 119 chain 17280 chr8 146364022 + 84564703 84564911 L1P1 4361 - 1223 1431 134835 208 chain 7551 chr8 146364022 + 84603889 84604045 PRIMA4_LTR 623 + 333 571 173868 20 37 117 76 5 7 18 chain 18527 chr8 146364022 + 84605868 84606146 LTR12C 1709 - 672 940 131432 14 0 41 24 50 0 121 1 0 68 chain 18071 chr8 146364022 + 84612373 84612598 L1PA10 4194 - 71 293 132676 6 3 0 216 chain 69580 chr8 146364022 + 84629190 84630103 HERVL-int 5654 + 0 1372 48580 531 34 491 160 4 6 184 chain 75413 chr8 146364022 + 84638941 84639869 L1PA7 6471 - 873 1835 45814 240 0 28 89 0 1 485 13 18 101 chain 68531 chr8 146364022 + 84639869 84640715 L1PA7 6471 + 5622 6466 49024 88 2 1 196 0 2 326 4 1 79 0 1 81 7 6 63 chain 25374 chr8 146364022 + 84669726 84670046 AluY 311 + 0 311 102808 125 3 0 8 3 0 116 2 0 28 1 0 34 chain 11848 chr8 146364022 + 84681706 84681868 L1PA14 3548 + 3179 3342 152842 28 0 3 11 1 0 111 1 0 10 chain 46966 chr8 146364022 + 84716907 84717502 PABL_A 660 - 0 660 61235 287 0 1 6 0 15 103 0 1 32 1 40 82 0 9 84 chain 58035 chr8 146364022 + 84722978 84723844 LTR12D 1347 + 405 1347 53958 130 2 33 17 6 5 83 70 0 21 0 17 172 1 3 10 4 1 21 17 19 49 0 97 241 0 1 22 chain 3906 chr8 146364022 + 84723243 84723286 LTR12D 1347 + 439 482 187902 43 chain 14932 chr8 146364022 + 84726909 84727068 L1PA4 6152 + 5992 6151 141528 159 chain 116668 chr8 146364022 + 84743982 84745291 L1PA4 6152 - 1406 2721 32206 394 0 4 192 0 1 111 0 1 612 chain 124842 chr8 146364022 + 84745291 84746702 L1PA4 6152 + 4726 6136 29441 1166 1 0 244 chain 25076 chr8 146364022 + 84755511 84755865 THE1A 353 + 0 353 104431 26 0 1 82 2 1 202 6 7 12 6 4 18 chain 66672 chr8 146364022 + 84757415 84758151 L1PA3long 6157 - 5 741 49800 736 chain 39165 chr8 146364022 + 84758151 84758592 L1PA3long 6157 + 4886 5329 70520 102 0 1 23 0 2 239 1 0 76 chain 22032 chr8 146364022 + 84767629 84767889 L1PA5 6144 + 5885 6143 120099 247 3 1 10 chain 3566 chr8 146364022 + 84771147 84771185 MER58C 217 - 17 55 214214 38 chain 4056 chr8 146364022 + 84782012 84782139 MER52D 1964 + 1151 1208 206546 32 70 0 25 chain 6330 chr8 146364022 + 84787722 84787828 L1PA8 5853 - 0 107 182537 14 0 7 52 1 0 7 9 5 8 1 0 14 chain 467182 chr8 146364022 + 84787858 84793438 L1PA5 6144 - 3 5582 8142 1448 0 4 200 1 0 87 2 0 1232 1 0 6 0 1 36 8 9 534 1 0 13 5 9 192 1 3 49 4 7 142 0 2 734 1 0 190 4 5 67 9 0 138 9 5 466 chain 37810 chr8 146364022 + 84801472 84802015 L1PA8 5853 + 5319 5853 72399 77 1 0 168 9 8 36 20 18 53 1 0 20 2 0 43 1 0 18 2 1 92 chain 125835 chr8 146364022 + 84802875 84804251 L1PA3long 6157 - 0 1378 29147 1362 0 2 14 chain 86636 chr8 146364022 + 84804251 84805213 L1PA3long 6157 + 3803 4766 40909 514 1 2 447 chain 511793 chr8 146364022 + 84810006 84816141 L1PA5 6144 + 4 6132 6000 1024 1 2 4 1 0 120 0 3 12 9 0 764 0 2 378 5 1 844 2 0 43 0 1 143 1 2 326 0 1 608 0 1 367 1 2 6 1 0 1373 1 0 101 chain 372838 chr8 146364022 + 84816718 84821309 L1PA7 6471 - 14 4602 11000 127 14 17 692 2 1 123 7 0 300 0 1 4 1 0 243 2 0 1011 5 7 93 1 2 44 1 2 184 3 0 120 1 2 852 2 1 488 0 2 97 0 1 174 chain 53810 chr8 146364022 + 84821309 84821996 L1P3 4156 + 713 1503 56389 350 1 101 70 0 3 3 1 0 61 0 1 201 chain 4272 chr8 146364022 + 84823344 84823394 MER87B 500 + 415 465 203603 50 chain 17805 chr8 146364022 + 84835649 84835844 SVA_E 1901 - 0 192 133394 5 3 0 187 chain 90114 chr8 146364022 + 84842885 84844029 MER11A 1151 + 0 1148 39607 176 8 0 23 2 0 31 0 4 60 2 11 24 1 3 353 0 2 118 4 3 54 3 0 55 0 1 230 chain 4990 chr8 146364022 + 84862249 84862303 L1PA5 6144 + 5591 5645 195242 54 chain 42680 chr8 146364022 + 84862303 84862799 L1PA5 6144 + 5646 6142 65797 496 chain 153572 chr8 146364022 + 84879621 84881540 L1PA7 6471 + 4528 6459 24147 169 0 3 914 0 3 79 0 2 5 3 0 104 1 4 231 0 2 92 7 8 53 9 10 252 chain 539583 chr8 146364022 + 84927106 84933093 L1PA3long 6157 - 0 6151 2885 4534 0 33 425 0 3 258 0 128 770 chain 37809 chr8 146364022 + 84962132 84962547 L1PA2 6032 - 0 415 72401 415 chain 62794 chr8 146364022 + 84962547 84963229 L1PA2 6032 + 4952 5634 51541 682 chain 22514 chr8 146364022 + 84969559 84969954 THE1B 368 + 0 368 117969 64 41 6 33 2 0 61 5 4 30 35 46 124 chain 17379 chr8 146364022 + 84970857 84971153 L1MA2 4263 - 158 440 134565 34 23 17 89 9 7 32 16 10 93 chain 7424 chr8 146364022 + 84973035 84973199 L1MA2 4263 - 4080 4240 174619 21 63 59 80 chain 524019 chr8 146364022 + 84989038 84995230 L1PA5 6144 - 3 6144 4766 15 1 0 59 0 1 53 0 1 10 3 11 774 0 1 220 0 2 1109 0 2 129 74 2 248 0 2 219 1 0 1099 1 0 17 1 0 740 1 0 274 1 4 226 0 1 83 0 1 111 2 3 434 7 10 280 chain 52454 chr8 146364022 + 85011330 85012005 L1PA10 4194 - 51 729 57321 26 6 3 32 1 0 66 0 5 56 1 2 217 0 1 270 chain 4580 chr8 146364022 + 85031869 85031928 MER41A 554 + 399 465 199879 31 0 1 22 0 6 6 chain 23997 chr8 146364022 + 85032103 85032386 AluSp 311 + 16 303 110343 75 0 4 208 chain 25001 chr8 146364022 + 85058444 85058774 L1PA8 5853 + 5494 5852 104778 70 1 0 44 2 0 58 0 33 46 1 0 15 1 0 92 chain 26451 chr8 146364022 + 85063087 85063384 L1PA7 6471 - 22 318 98231 6 1 0 290 chain 29470 chr8 146364022 + 85081802 85082177 MER48 407 - 3 407 86753 88 0 10 39 1 2 96 0 19 45 1 0 105 chain 5083 chr8 146364022 + 85144701 85144842 L1MA8 2339 + 2135 2264 194247 29 11 8 29 6 0 17 27 25 14 1 0 7 chain 62409 chr8 146364022 + 85154657 85155720 L1PA11 4918 - 340 1392 51720 11 2 0 13 1 0 15 53 40 11 1 0 13 2 0 7 7 15 46 1 0 13 2 1 68 5 0 57 5 0 159 30 31 169 0 19 15 10 11 21 1 2 46 0 1 18 0 3 36 27 13 20 21 21 157 chain 26989 chr8 146364022 + 85178929 85179217 AluY 311 + 16 305 96317 116 0 1 172 chain 101806 chr8 146364022 + 85189690 85191151 THE1B-int 1605 - 11 1546 36317 269 1 0 325 0 1 159 12 15 23 0 1 37 57 53 29 0 1 42 12 22 124 32 97 117 0 6 11 37 29 174 chain 40615 chr8 146364022 + 85202536 85202988 LTR7 482 - 0 482 68412 190 0 31 12 1 0 249 chain 40447 chr8 146364022 + 85204665 85205155 MER41A 554 + 7 496 68668 152 1 0 337 chain 18603 chr8 146364022 + 85252108 85252410 THE1B 368 + 0 306 131216 169 1 0 5 50 56 10 1 0 66 chain 25246 chr8 146364022 + 85280704 85281067 THE1B 368 - 0 368 103498 125 35 45 22 5 0 176 chain 255393 chr8 146364022 + 85300086 85302945 L1PA3long 6157 - 5 2869 15964 142 4 6 443 0 1 93 0 1 166 1 0 1403 0 2 607 chain 28066 chr8 146364022 + 85313590 85313902 AluYk4 311 + 0 311 92767 92 1 0 219 chain 24359 chr8 146364022 + 85316731 85317095 L1P3 4156 - 17 377 107933 24 2 1 7 2 0 58 1 0 128 23 24 71 10 9 38 chain 64131 chr8 146364022 + 85317095 85317884 L1P3 4156 + 2950 3745 50949 429 0 5 115 0 1 245 chain 2927 chr8 146364022 + 85323834 85323870 MIRb 242 + 162 198 226559 36 chain 554372 chr8 146364022 + 85331780 85337808 L1PA2 6032 - 0 6029 902 254 0 1 5774 chain 6286 chr8 146364022 + 85348219 85348320 L1PB1 5432 + 5328 5423 182914 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 551861 chr8 146364022 + 85376377 85382401 L1PA2 6032 - 2 6032 1208 339 0 1 2302 0 1 2273 1 0 92 0 2 452 0 4 308 1 0 256 chain 26154 chr8 146364022 + 85387155 85387467 L1PA6 6164 - 6 319 99388 92 6 7 214 chain 63471 chr8 146364022 + 85406572 85407404 L1PA10 4194 - 33 869 51256 11 1 0 33 5 4 31 1 0 149 1 3 26 0 3 26 0 1 168 0 1 4 1 0 233 0 1 142 chain 28138 chr8 146364022 + 85434484 85434783 AluYa5 310 - 11 310 92510 299 chain 4966 chr8 146364022 + 85435264 85435327 THE1B-int 1605 - 1539 1605 195526 21 0 1 27 0 2 15 chain 58397 chr8 146364022 + 85435749 85436384 L1PA2 6032 - 0 635 53749 635 chain 32153 chr8 146364022 + 85436384 85436733 L1PA2 6032 + 5067 5416 80606 349 chain 4107 chr8 146364022 + 85455653 85455725 L1PB1 5432 + 5360 5427 205813 10 1 0 22 2 1 11 1 0 18 2 0 5 chain 13120 chr8 146364022 + 85459203 85459413 L1PA8 5853 - 0 220 147767 84 10 9 19 2 1 43 1 0 4 0 6 8 2 1 20 0 8 17 chain 16634 chr8 146364022 + 85473731 85474141 MER44B 551 - 84 499 136575 81 1 5 89 171 172 68 chain 121335 chr8 146364022 + 85480286 85481645 L1PA4 6152 - 1 1363 30585 112 0 1 16 1 0 394 1 0 320 0 4 515 chain 23835 chr8 146364022 + 85501140 85501430 AluSp 311 - 19 309 111278 39 0 1 120 1 0 130 chain 4806 chr8 146364022 + 85509965 85510092 MER58B 340 + 149 277 197300 50 57 58 20 chain 18215 chr8 146364022 + 85522045 85522357 THE1B 368 - 58 368 132297 58 41 43 7 0 1 32 1 0 86 24 20 63 chain 542811 chr8 146364022 + 85527831 85533856 L1PA3long 6157 - 0 6157 2374 5 1 0 838 0 4 226 0 1 2612 0 1 1561 0 128 213 0 4 202 16 10 199 0 1 152 chain 6770 chr8 146364022 + 85554652 85554832 MER83A-int 427 - 21 192 179178 34 6 2 16 1 0 11 5 2 16 1 0 4 3 8 19 28 25 28 2 0 6 chain 100279 chr8 146364022 + 85561441 85562533 L1PA3long 6157 - 925 2017 36699 1092 chain 84788 chr8 146364022 + 85562533 85563466 L1PA3long 6157 + 5223 6157 41525 600 0 1 333 chain 10576 chr8 146364022 + 85573867 85573984 L1PA2 6032 - 1 118 157929 117 chain 157502 chr8 146364022 + 85575641 85577981 L1PA11 4918 - 340 2682 23661 11 2 0 13 1 0 13 10 11 10 22 13 19 1 0 16 25 24 54 2 1 68 3 1 129 0 1 84 2 3 288 0 4 64 6 0 10 56 43 32 1 0 162 0 5 171 1 2 126 1 2 352 17 26 124 1 0 4 4 3 111 6 18 13 2 0 7 12 14 10 1 2 180 0 1 57 0 1 8 3 7 19 1 0 5 chain 9184 chr8 146364022 + 85581748 85581857 L1PA16 3655 - 77 186 164640 109 chain 116477 chr8 146364022 + 85583076 85584735 THE1B-int 1605 - 8 1585 32286 143 4 5 274 1 0 149 13 10 305 1 0 4 1 2 68 0 1 57 1 2 11 0 1 41 8 0 73 46 21 13 0 1 5 2 1 112 5 6 172 51 0 22 0 1 77 chain 321089 chr8 146364022 + 85592098 85595776 L1PA4 6152 - 11 3702 12553 178 0 1 143 0 1 279 0 1 244 1 0 629 1 2 119 4 11 178 0 4 1186 2 1 714 chain 69022 chr8 146364022 + 85601312 85602091 L1PA3long 6157 - 0 777 48797 5 3 0 328 0 1 443 chain 170460 chr8 146364022 + 85639709 85641611 L1PA3long 6157 - 0 1902 21996 259 1 0 1473 1 2 168 chain 115672 chr8 146364022 + 85641611 85642889 L1PA3long 6157 + 2986 4264 32539 1278 chain 4535 chr8 146364022 + 85666448 85666499 L1PA2 6032 + 5981 6032 200407 51 chain 57642 chr8 146364022 + 85682428 85683276 L1PB1 5432 - 119 950 54166 13 2 0 4 1 0 15 1 0 45 1 0 15 2 1 41 44 37 4 1 0 24 1 0 15 6 1 210 0 1 22 0 1 236 3 0 116 0 4 26 chain 100323 chr8 146364022 + 85699247 85700452 L1PA7 6471 - 6 1198 36687 6 4 0 321 0 1 58 24 11 451 0 3 341 chain 12936 chr8 146364022 + 85700452 85700613 L1PA7 6471 + 5081 5263 147562 57 0 21 104 chain 394068 chr8 146364022 + 85719299 85724578 L1PB1 5432 - 41 5316 10316 20 2 1 24 2 0 14 8 5 19 29 12 16 1 0 44 18 16 50 3 1 10 27 21 24 1 0 5 9 6 143 0 1 327 0 1 5 3 0 110 5 12 94 0 6 234 1 0 438 3 0 7 30 34 253 7 8 116 6 29 370 12 13 60 2 1 343 5 1 382 0 1 104 3 1 324 2 0 214 1 0 73 25 9 746 0 4 28 4 0 6 1 4 6 0 5 26 1 12 8 1 0 132 0 1 22 0 1 257 0 2 13 chain 25453 chr8 146364022 + 85726007 85726300 L1PA5 6144 - 14 314 102440 123 0 7 170 chain 14756 chr8 146364022 + 85732784 85733004 L1PA8 5853 - 0 216 142080 92 2 1 19 2 1 44 4 3 14 1 0 42 chain 541885 chr8 146364022 + 85751220 85757355 L1PA4 6152 + 3 6143 2528 1241 1 0 199 0 2 1519 1 2 941 5 6 152 0 1 1751 0 1 325 chain 30001 chr8 146364022 + 85768981 85769297 AluYb8 318 + 0 316 84805 316 chain 7674 chr8 146364022 + 85804862 85804946 L1PA5 6144 + 6059 6143 173077 84 chain 24049 chr8 146364022 + 85844267 85844548 AluSg7 307 - 23 303 110048 158 1 0 122 chain 181901 chr8 146364022 + 85852888 85855544 MER57-int 2662 + 40 2662 20795 30 48 29 9 1 0 35 0 2 43 11 16 109 2 0 55 0 1 106 0 1 271 5 13 57 2 0 32 8 10 139 2 0 40 0 1 16 1 0 41 6 2 110 0 1 196 1 0 35 8 7 83 5 16 118 3 0 190 0 8 32 0 1 14 25 22 396 11 8 89 18 12 61 31 20 26 1 0 7 13 9 24 15 9 33 3 0 31 2 0 6 chain 303039 chr8 146364022 + 85863681 85867251 L1PA6 6164 - 16 3595 13279 128 11 6 6 0 5 681 0 4 58 6 5 886 0 4 349 6 5 18 0 1 606 0 1 146 0 1 669 chain 232475 chr8 146364022 + 85867251 85875626 L1PA6 6164 + 2049 6144 17165 285 1 0 233 5234 664 46 0 4 823 10 8 253 0 4 153 274 558 157 1 0 76 1 2 312 0 1 516 chain 20404 chr8 146364022 + 85869325 85869581 L1PA7 6471 + 6198 6459 125881 157 0 5 99 chain 19788 chr8 146364022 + 85874307 85874537 L1PA4 6152 + 5921 6151 127851 230 chain 194899 chr8 146364022 + 85883593 85885738 L1PA3long 6157 - 0 2157 19590 922 7 18 535 5 6 676 chain 7274 chr8 146364022 + 85885738 85885817 L1PA3long 6157 + 6078 6157 175631 79 chain 24335 chr8 146364022 + 85886157 85886505 L1MA3 4352 + 2325 2667 108446 10 0 2 9 0 1 38 12 9 118 5 0 70 1 0 85 chain 34952 chr8 146364022 + 85898438 85898927 L1PA8 5853 - 142 644 76260 23 1 0 9 2 1 25 0 1 44 2 0 42 10 9 114 0 19 47 0 3 98 6 1 66 chain 20211 chr8 146364022 + 85903150 85903447 THE1D 372 - 0 297 126495 33 8 7 87 1 7 41 14 9 113 chain 199516 chr8 146364022 + 85906783 85909055 L1PA4 6152 - 2639 4913 19243 309 1 2 1943 1 2 18 chain 30520 chr8 146364022 + 85909055 85909403 L1PA4 6152 + 3536 3885 82893 143 0 1 205 chain 165603 chr8 146364022 + 85909403 85911285 L1PA4 6152 + 3892 5791 22567 185 4 10 1123 8 19 562 chain 31737 chr8 146364022 + 85911285 85911644 L1PA4 6152 + 5792 6152 81262 246 0 1 113 chain 268491 chr8 146364022 + 85915965 85919536 L1PB1 5432 + 1883 5427 15261 24 0 1 348 0 1 125 0 1 115 0 2 89 0 4 130 0 1 87 0 3 5 7 3 143 0 4 39 0 1 725 20 11 211 1 0 241 1 0 4 5 6 29 6 7 161 0 1 221 4 0 153 0 3 23 0 1 297 1 0 9 1 2 24 1 0 9 2 1 10 5 1 10 3 1 49 3 2 15 1 0 44 1 0 16 14 1 27 10 7 15 2 0 24 1 0 21 1 0 13 1 0 18 1 0 5 chain 4954 chr8 146364022 + 85920005 85920135 MLT1F1 559 - 412 557 195665 23 24 22 22 16 35 7 2 0 36 chain 9719 chr8 146364022 + 85924367 85924476 L1P1 4361 - 2171 2280 161985 109 chain 276498 chr8 146364022 + 85924476 85927524 L1PA3long 6157 + 3051 6099 14842 3048 chain 115013 chr8 146364022 + 85944779 85946648 THE1A-int 1579 - 6 1579 32789 376 0 1 28 0 16 481 7 8 26 5 24 114 0 1 54 7 9 39 0 1 8 354 13 76 5 6 23 9 12 75 14 13 49 1 2 118 chain 29005 chr8 146364022 + 85945924 85946277 L1PA7 6471 + 6116 6468 88962 215 0 1 129 2 0 7 chain 30344 chr8 146364022 + 85955672 85955990 AluYb9 318 - 0 318 83799 318 chain 22561 chr8 146364022 + 85961837 85962112 AluY 311 + 5 275 117756 100 0 1 27 7 1 141 chain 190490 chr8 146364022 + 85964132 85966434 L1PA7 6471 + 4140 6470 20001 79 0 22 302 0 7 858 0 1 209 2 0 6 0 1 83 1 2 742 1 0 14 1 0 4 chain 12288 chr8 146364022 + 85971404 85971606 L1MA3 4352 - 24 233 151047 14 6 5 21 1 0 6 1 0 22 2 0 24 4 0 31 0 6 28 0 10 42 chain 30131 chr8 146364022 + 85975065 85975457 LTR7 482 + 0 465 84380 69 8 46 109 0 1 40 0 31 9 0 3 157 chain 287870 chr8 146364022 + 85975475 85979201 HERVH-int 3825 + 0 3825 14166 333 1 0 197 6 1 39 2 1 9 65 0 24 70 0 15 1 0 11 4 1 25 1 0 41 1 0 59 0 1 6 0 2 13 0 1 650 9 0 4 1 0 37 2 1 105 6 0 203 0 1 285 2 1 20 8 13 82 0 1 563 8 6 319 9 11 39 0 210 77 27 28 172 0 43 175 chain 26990 chr8 146364022 + 85998455 85998757 AluY 311 + 9 311 96312 302 chain 16472 chr8 146364022 + 86000023 86000255 THE1B 368 + 134 366 137001 65 0 2 62 14 15 13 3 0 75 chain 41156 chr8 146364022 + 86001396 86001937 MER41A 554 + 0 554 67705 408 9 13 14 0 3 25 4 9 61 1 2 19 chain 460807 chr8 146364022 + 86062494 86069649 L1PA6 6164 + 550 6156 8370 17 9 8 212 0 17 116 0 4 1501 0 1 65 0 8 288 1 0 28 1598 0 374 0 1 50 0 4 61 0 3 52 2 0 86 4 5 72 1 0 742 0 1 384 0 5 388 0 1 208 0 1 58 0 5 127 0 1 387 0 1 161 18 0 8 0 18 137 chain 3224 chr8 146364022 + 86065488 86065524 LTR12C 1709 + 859 895 220536 36 chain 8091 chr8 146364022 + 86065602 86065707 LTR12C 1709 + 654 837 170540 63 0 78 42 chain 199940 chr8 146364022 + 86096303 86098735 L1PA7 6471 + 4002 6454 19218 67 7 8 91 0 5 35 0 1 22 0 1 88 0 1 351 0 4 472 1 0 89 0 1 375 1 5 641 0 3 192 chain 6189 chr8 146364022 + 86116611 86116683 L1PA4 6152 + 5826 5898 183657 72 chain 22849 chr8 146364022 + 86116684 86116937 L1PA4 6152 + 5898 6151 116348 253 chain 42254 chr8 146364022 + 86133426 86133992 LTR19B 566 - 0 566 66327 13 1 3 36 3 0 16 0 5 194 9 4 128 10 12 113 2 1 41 chain 22318 chr8 146364022 + 86138010 86138290 AluSp 311 + 10 284 118836 43 9 3 228 chain 18842 chr8 146364022 + 86140217 86140499 AluSz6 309 + 10 299 130540 30 2 0 70 39 48 141 chain 22933 chr8 146364022 + 86140545 86140837 AluSq2 311 + 11 302 115948 113 5 4 174 chain 26927 chr8 146364022 + 86165165 86165473 AluSp 311 - 3 311 96525 308 chain 20235 chr8 146364022 + 86185699 86185983 MER48 407 + 0 305 126426 30 0 1 6 12 11 58 1 0 31 1 21 15 1 0 118 0 3 11 chain 128694 chr8 146364022 + 86188109 86189787 LTR12C 1709 + 0 1709 28389 278 19 19 39 0 43 37 4 0 48 5 4 34 11 10 67 1 0 120 41 0 138 1 0 249 0 47 91 11 4 258 2 0 132 15 14 77 chain 3366 chr8 146364022 + 86188772 86188813 LTR12C 1709 + 818 858 85777 19 1 0 21 chain 24444 chr8 146364022 + 86189856 86190236 MER48 407 - 8 407 107836 37 1 3 161 47 66 87 1 0 9 1 0 8 0 1 16 1 0 11 chain 76351 chr8 146364022 + 86235700 86236801 MER11A 1151 - 0 1151 45288 167 0 1 16 1 0 7 17 5 34 0 1 29 23 5 24 8 15 11 25 1 142 8 9 23 0 3 119 0 1 94 15 16 134 4 0 88 0 3 4 0 91 108 chain 6593 chr8 146364022 + 86253005 86253085 Tigger1 2417 + 2096 2176 180516 80 chain 32884 chr8 146364022 + 86293846 86294270 L1PA10 4194 - 33 452 79390 10 2 1 34 3 0 34 1 0 340 chain 510426 chr8 146364022 + 86331087 86337210 L1PA5 6144 - 9 6141 6128 68 0 2 34 1 0 34 0 1 11 0 1 1197 25 23 125 11 12 906 0 1 43 0 2 766 0 1 262 6 5 890 0 1 271 0 1 248 4 5 465 0 1 190 10 9 221 3 4 332 chain 14841 chr8 146364022 + 86340941 86341127 L1PA8 5853 - 0 197 141805 93 1 0 19 2 1 52 0 13 19 chain 43948 chr8 146364022 + 86343617 86344144 MER41A 554 + 0 528 64266 93 0 1 434 chain 13629 chr8 146364022 + 86345877 86346089 L1PA8 5853 + 5645 5853 145860 33 29 27 35 2 1 19 1 0 93 chain 88709 chr8 146364022 + 86394050 86395033 L1PA4 6152 - 312 1296 40107 550 0 1 433 chain 308410 chr8 146364022 + 86397598 86402150 L1PB1 5432 - 10 4355 13072 15 4 10 5 1 0 22 1 0 24 2 0 14 1 0 5 5 3 16 32 20 7 1 0 44 1 0 16 2 1 52 2 0 7 9 5 12 1 0 28 206 0 11 1 2 121 0 4 77 0 2 157 0 1 114 3 0 172 1 0 76 0 2 41 6 7 24 0 1 337 7 5 234 44 37 129 1 0 4 0 1 628 0 1 145 42 56 63 4 1 36 13 13 102 33 17 49 0 1 20 4 10 101 0 1 4 1 0 66 0 4 182 1 0 176 0 8 173 0 1 278 4 8 12 16 20 28 26 25 185 2 3 63 chain 29955 chr8 146364022 + 86402150 86402572 LTR7B 505 + 0 495 84953 108 0 10 57 0 38 12 3 27 26 0 2 82 1 0 24 0 1 54 14 13 41 chain 15298 chr8 146364022 + 86410154 86410623 L1PB1 5432 + 5028 5414 140497 70 61 10 9 4 1 17 1 0 11 1 0 10 2 0 3 2 0 9 5 3 51 107 94 11 7 4 13 2 0 28 1 0 19 1 0 13 1 0 10 chain 21210 chr8 146364022 + 86443909 86444206 AluSp 311 - 10 302 123178 56 12 10 103 2 0 19 3 2 102 chain 45047 chr8 146364022 + 86492626 86493210 L1PA6 6164 - 4 615 62997 12 2 1 122 2 1 7 0 1 181 0 1 6 0 26 69 0 1 183 chain 26697 chr8 146364022 + 86493210 86493540 L1P2 5180 + 835 1171 97331 303 5 11 22 chain 66358 chr8 146364022 + 86532224 86532984 L1PA5 6144 + 5386 6144 49927 746 3 1 11 chain 25166 chr8 146364022 + 86551111 86551444 L1P2 5180 - 4007 4345 103929 32 12 18 154 0 1 36 0 2 69 4 0 26 chain 49249 chr8 146364022 + 86551444 86552053 L1PA6 6164 + 5549 6160 59553 183 0 1 151 5 6 270 chain 3971 chr8 146364022 + 86562175 86562287 MIR 256 + 13 143 207811 31 51 69 30 chain 287415 chr8 146364022 + 86562646 86566249 L1PA5 6144 - 12 3607 14194 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1843 2 1 49 chain 51873 chr8 146364022 + 86572457 86573133 L1P1 4361 - 1195 1862 57698 578 2 1 49 5 6 11 10 1 21 chain 285115 chr8 146364022 + 86728686 86732336 L1PA5 6144 + 2498 6132 14345 21 4 1 9 13 8 49 2 1 158 0 6 6 7 1 1672 8 1 325 0 1 7 25 23 504 2 3 173 1 0 200 0 1 4 1 0 219 1 0 96 1 2 12 0 1 130 chain 3252 chr8 146364022 + 86732695 86732796 MIR 256 - 113 232 219964 30 51 69 20 chain 5527 chr8 146364022 + 86733508 86733752 L1MA8 2339 - 93 312 189769 13 2 0 23 31 25 17 9 14 15 88 66 46 chain 284791 chr8 146364022 + 86750135 86753785 L1PA5 6144 + 2498 6132 14366 21 4 1 9 13 8 49 2 1 662 1 0 4 16 17 1160 8 1 325 0 1 7 25 23 505 1 2 173 1 0 200 0 1 4 1 0 219 1 0 96 1 2 12 0 1 130 chain 3252 chr8 146364022 + 86754144 86754245 MIR 256 - 113 232 219963 30 51 69 20 chain 117668 chr8 146364022 + 86754642 86756152 L1P1 4361 - 361 1862 31903 742 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 3854 chr8 146364022 + 86769473 86769697 L1MA8 2339 + 2047 2246 209565 26 30 28 15 67 52 17 31 25 23 2 0 13 chain 3252 chr8 146364022 + 86770409 86770510 MIR 256 + 24 143 219961 20 51 69 30 chain 287869 chr8 146364022 + 86770869 86774519 L1PA5 6144 - 12 3646 14168 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1173 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 3252 chr8 146364022 + 86782603 86782704 MIR 256 + 24 143 219960 20 51 69 30 chain 286975 chr8 146364022 + 86783063 86786666 L1PA5 6144 - 12 3607 14223 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1843 2 1 49 chain 3252 chr8 146364022 + 86797878 86797979 MIR 256 + 24 143 219959 20 51 69 30 chain 287869 chr8 146364022 + 86798338 86801988 L1PA5 6144 - 12 3646 14167 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1173 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 3252 chr8 146364022 + 86810071 86810172 MIR 256 + 24 143 219958 20 51 69 30 chain 287024 chr8 146364022 + 86810531 86814181 L1PA5 6144 - 12 3646 14219 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 173 2 3 504 25 23 10 0 1 322 8 1 1173 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 3854 chr8 146364022 + 86821329 86821553 L1MA8 2339 + 2047 2246 209564 26 30 28 15 67 52 17 31 25 23 2 0 13 chain 3252 chr8 146364022 + 86822265 86822366 MIR 256 + 24 143 219957 20 51 69 30 chain 287174 chr8 146364022 + 86822725 86826375 L1PA5 6144 - 12 3646 14209 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1173 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 287747 chr8 146364022 + 86834912 86838562 L1PA5 6144 - 12 3646 14175 135 0 1 7 1 2 102 1 0 213 1 0 4 0 1 200 1 0 179 0 1 500 25 23 10 0 1 322 8 1 1173 0 1 7 1 0 662 2 1 49 5 6 11 10 1 21 chain 44995 chr8 146364022 + 86871009 86871522 MER9a2 513 - 0 513 63061 513 chain 4435 chr8 146364022 + 86874386 86874448 L1MA6 2487 - 87 147 201516 20 3 0 4 0 1 35 chain 527697 chr8 146364022 + 86880514 86886625 L1PA5 6144 - 1 6144 4432 10 3 1 279 1 2 297 8 0 1065 0 1 761 0 12 740 0 1 181 6 11 79 0 1 1067 0 1 555 0 2 6 4 2 499 3 4 114 0 18 128 0 1 305 chain 109857 chr8 146364022 + 86929585 86930818 L1PA5 6144 + 4909 6143 34244 981 0 1 252 chain 3928 chr8 146364022 + 86939109 86939155 MADE1 96 - 50 96 208446 46 chain 17836 chr8 146364022 + 86985977 86986181 L1PA4 6152 - 0 204 133285 204 chain 3733 chr8 146364022 + 87008988 87009033 LTR37A 408 - 285 330 211422 45 chain 21121 chr8 146364022 + 87069659 87069908 AluSc 308 - 54 298 123481 207 5 0 37 chain 2988 chr8 146364022 + 87073469 87073503 LTR16A2 485 + 423 457 225298 34 chain 2967 chr8 146364022 + 87083563 87083597 MADE1 96 - 62 96 225722 34 chain 117501 chr8 146364022 + 87088110 87089522 L1PA7 6471 - 5 1420 31904 47 0 1 407 0 2 307 0 1 72 10 9 569 chain 145686 chr8 146364022 + 87089522 87091310 L1PA7 6471 + 3315 5062 25228 143 0 1 84 1 2 15 29 0 440 3 0 603 12 0 203 0 1 255 chain 5404 chr8 146364022 + 87123797 87123873 L1MA8 2339 - 518 595 190943 56 4 5 16 chain 4045 chr8 146364022 + 87128872 87128918 5S 121 - 74 120 206720 46 chain 44812 chr8 146364022 + 87155507 87156053 MER41A 554 - 0 554 63279 53 1 2 13 0 5 253 1 2 133 0 1 92 chain 51603 chr8 146364022 + 87164167 87164792 L1PA7 6471 - 13 639 57890 44 1 0 92 2 1 7 0 4 93 1 0 385 chain 21183 chr8 146364022 + 87166030 87166276 AluSg7 307 - 41 287 123266 246 chain 502295 chr8 146364022 + 87180706 87186748 L1PA6 6164 - 2 6162 6710 6 4 0 1481 5 0 53 0 1 140 0 1 391 0 1 197 0 3 51 35 35 455 2 0 30 0 1 6 1 0 4 0 1 15 1 0 105 2 4 588 0 3 264 0 1 758 1 0 120 0 1 15 1 4 422 0 19 95 0 97 329 6 5 403 1 0 55 chain 19691 chr8 146364022 + 87201127 87201377 MER1A 529 - 6 256 128129 250 chain 14726 chr8 146364022 + 87206974 87207153 L1PA5 6144 + 5965 6141 142180 55 3 0 121 chain 19875 chr8 146364022 + 87209333 87209700 L1MB3 1562 + 1186 1524 127571 157 9 10 68 1 0 8 69 41 42 1 0 12 chain 16156 chr8 146364022 + 87233697 87233873 L1PA2 6032 - 4 180 137876 176 chain 16045 chr8 146364022 + 87235661 87235947 L1PB4 2604 - 121 474 138227 83 73 140 130 chain 257884 chr8 146364022 + 87258868 87263285 L1MA1 4479 - 289 4200 15814 18 15 10 13 9 7 33 4 2 29 1 0 124 15 11 84 1 0 14 2 0 19 1 0 20 0 2 29 5 6 12 1 2 16 2 0 25 1 0 194 1 0 74 3 0 36 29 26 111 12 8 14 1 0 17 13 45 14 4 0 15 1 0 5 14 14 9 1 0 55 0 2 40 4 0 36 0 7 10 2 0 24 1 0 7 2 1 78 1 0 68 1 0 29 7 5 30 0 3 5 4 0 130 1 0 7 1 0 270 0 4 142 5 6 10 9 5 35 1 0 4 408 41 393 2 1 80 0 2 87 6 19 207 41 0 43 144 37 106 0 1 111 4 0 74 1 0 21 1 0 96 1 5 10 5 0 18 2 5 20 0 3 54 0 1 81 2 1 183 0 2 63 0 1 19 6 7 48 chain 6211 chr8 146364022 + 87262279 87262359 L1MA1 4479 - 3278 3357 182274 12 1 0 67 chain 61282 chr8 146364022 + 87327563 87328426 L1PREC2 3366 + 836 1684 52214 74 2 1 93 0 3 165 30 13 78 0 1 46 1 0 94 1 2 162 13 12 104 chain 37094 chr8 146364022 + 87328584 87329079 MER9a3 513 - 0 513 73391 66 10 13 322 4 5 57 1 13 17 0 2 18 chain 23454 chr8 146364022 + 87335386 87335650 L1PA7 6471 - 284 548 113354 264 chain 22437 chr8 146364022 + 87335650 87335926 L1PA7 6471 + 6189 6458 118312 162 8 0 88 0 1 18 chain 30042 chr8 146364022 + 87351285 87351974 THE1C 375 - 0 375 84679 26 1 0 312 313 0 37 chain 26835 chr8 146364022 + 87371999 87372306 AluY 311 + 3 311 96850 129 0 1 178 chain 29005 chr8 146364022 + 87384246 87384550 AluYg6 310 - 6 310 88964 304 chain 133386 chr8 146364022 + 87401385 87402965 SVA_B 1603 - 0 1601 27347 193 0 1 398 5 0 21 14 13 10 4 0 46 9 5 24 0 40 812 5 1 10 10 8 19 chain 140653 chr8 146364022 + 87435472 87437063 SVA_C 1631 - 20 1610 26045 568 4 0 39 0 1 98 28 34 15 4 0 835 chain 9157 chr8 146364022 + 87439512 87439625 L1PA8 5853 + 5741 5853 164779 19 1 0 93 chain 21209 chr8 146364022 + 87445900 87446162 AluSq2 311 + 10 296 123185 93 0 27 153 4 1 12 chain 5475 chr8 146364022 + 87517800 87517867 L1PA8 5853 - 6 73 190253 67 chain 24494 chr8 146364022 + 87523424 87523715 AluY 311 + 3 296 107571 129 0 1 126 1 2 35 chain 26879 chr8 146364022 + 87576563 87576930 THE1C 375 - 0 375 96701 26 1 0 163 2 1 16 1 0 4 1 2 81 2 1 48 0 11 22 chain 17353 chr8 146364022 + 87583205 87583447 THE1B 368 + 119 368 134652 53 2 1 133 12 20 42 chain 545110 chr8 146364022 + 87598576 87604593 L1PA3long 6157 - 10 6157 2062 2202 0 1 3040 0 128 623 0 1 152 chain 38520 chr8 146364022 + 87608945 87609405 L1PA6 6164 + 5696 6160 71411 312 0 1 50 0 3 98 chain 88479 chr8 146364022 + 87611281 87612354 MER11B 1079 + 0 1064 40193 259 3 0 56 0 1 279 1 0 177 6 0 292 chain 89783 chr8 146364022 + 87620258 87621266 LTR13 1007 + 0 1007 39727 304 1 0 703 chain 15452 chr8 146364022 + 87635561 87635810 MLT1A1 405 - 38 290 140050 109 0 1 61 45 47 34 chain 27151 chr8 146364022 + 87662815 87663345 L1PB3 3668 + 3114 3620 95752 38 10 12 6 0 1 43 0 1 7 11 10 52 7 6 101 1 0 84 47 33 20 3 1 37 7 3 12 5 4 10 7 4 14 1 0 7 chain 39431 chr8 146364022 + 87677385 87677956 L1PA16 3655 + 2983 3578 70117 120 1 0 98 1 0 90 2 0 44 29 28 33 4 27 103 0 6 46 chain 21128 chr8 146364022 + 87680469 87680712 L1PA7 6471 + 6215 6458 123457 243 chain 8318 chr8 146364022 + 87689395 87689501 MLT1C 463 + 353 459 169288 106 chain 5253 chr8 146364022 + 87692058 87692275 MLT1B 390 + 151 343 192486 17 137 112 63 chain 134167 chr8 146364022 + 87701791 87703318 L1PA5 6144 - 0 1531 27171 228 5 4 544 0 1 66 0 4 684 chain 161902 chr8 146364022 + 87705690 87707570 SVA_D 2077 - 16 2071 23079 430 1 0 182 1 0 12 0 49 80 0 1 8 11 37 4 0 1 203 1 138 126 40 0 398 0 3 207 0 1 29 4 3 143 chain 11254 chr8 146364022 + 87708854 87709061 L1M1 2793 - 121 328 155210 44 2 1 17 41 42 103 chain 35336 chr8 146364022 + 87709880 87710284 L1PA5 6144 - 9 413 75757 404 chain 19699 chr8 146364022 + 87727997 87728213 L1PA3long 6157 + 5941 6157 128105 216 chain 8601 chr8 146364022 + 87733505 87733768 L1PB1 5432 + 5168 5422 167726 52 6 5 12 1 0 12 15 16 16 1 0 15 2 0 6 81 78 11 1 0 13 1 0 18 chain 27559 chr8 146364022 + 87766605 87766973 L1PA8 5853 - 0 360 94474 93 1 0 19 2 1 52 13 10 70 2 0 43 2 1 71 chain 44522 chr8 146364022 + 87782725 87783274 MLT2A2 560 - 0 560 63555 147 3 14 399 chain 120048 chr8 146364022 + 87792075 87793628 THE1B-int 1605 + 13 1605 31044 415 26 53 288 1 0 7 0 1 244 1 12 112 11 12 448 chain 6306 chr8 146364022 + 87797193 87797277 L1PB 1623 + 1355 1446 182741 21 0 6 40 0 1 23 chain 20364 chr8 146364022 + 87808410 87808720 L1PA14 3548 + 3171 3465 126017 50 1 0 111 1 0 10 5 1 36 4 2 12 1 0 5 1 0 57 6 0 10 chain 7721 chr8 146364022 + 87815278 87815365 L1PA5 6144 + 6054 6141 172774 87 chain 123484 chr8 146364022 + 87816112 87817499 L1HS 6032 - 3540 4927 29885 1387 chain 217385 chr8 146364022 + 87817508 87819912 L1PA3long 6157 + 3711 6157 18035 235 0 1 697 0 5 1386 0 36 86 chain 27795 chr8 146364022 + 87856791 87857115 L1PA6 6164 - 2 333 93713 15 0 6 130 0 1 179 chain 28157 chr8 146364022 + 87896097 87896408 AluYa5 310 + 0 310 92437 123 1 0 187 chain 30436 chr8 146364022 + 87906270 87906588 AluYb8 318 - 0 318 83562 318 chain 8082 chr8 146364022 + 87921757 87921846 L1PA5 6144 - 1 90 170586 89 chain 3002 chr8 146364022 + 87931205 87931237 L1PB4 2604 - 94 126 224995 32 chain 3160 chr8 146364022 + 87932679 87932717 tRNA-Gly-GGA 38 - 0 38 221750 38 chain 388982 chr8 146364022 + 87940513 87945441 HERV9-int 5642 - 0 4988 10487 17 10 4 23 25 2 12 1 0 59 2 1 25 2 0 38 6 4 87 0 1 4 0 6 129 1 0 613 1 0 5 0 1 1532 0 1 249 0 3 79 2 3 267 6 7 152 11 7 439 0 4 281 1 0 10 0 1 245 4 6 33 3 2 46 7 6 44 0 6 54 8 6 21 27 22 179 4 116 74 6 0 16 22 0 46 chain 13099 chr8 146364022 + 87949608 87949759 THE1B-int 1605 - 8 159 147851 151 chain 431666 chr8 146364022 + 87967075 87972250 L1PA5 6144 - 12 5168 9279 344 0 1 510 3 6 922 0 2 467 0 2 193 4 3 493 0 1 19 6 5 215 0 1 266 2 0 56 5 7 52 0 1 483 29 9 654 5 0 6 1 6 237 9 0 92 0 1 102 chain 72393 chr8 146364022 + 87972265 87973182 L1PA5 6144 + 19 950 47307 104 1 15 671 17 0 9 0 17 115 chain 54002 chr8 146364022 + 87978559 87979342 LTR12_ 688 - 0 688 56363 165 110 13 371 0 1 73 0 1 64 chain 4819 chr8 146364022 + 87978726 87978784 LTR12_ 688 - 276 334 197135 58 chain 24060 chr8 146364022 + 87984187 87984468 AluSg7 307 - 16 298 109984 159 0 1 122 chain 28563 chr8 146364022 + 88000607 88001211 L1MA3 4352 - 0 573 90903 37 1 0 16 19 17 9 13 0 7 3 6 30 4 0 10 5 0 77 117 105 110 5 8 141 chain 58189 chr8 146364022 + 88024503 88025260 MER4E 760 + 0 760 53875 23 0 1 146 1 0 10 0 1 82 1 2 7 1 0 97 1 3 60 1 0 174 0 1 153 chain 52686 chr8 146364022 + 88032735 88033494 MER4E 760 + 0 760 57196 24 1 0 148 2 0 103 4 0 11 1 5 28 30 31 11 3 5 18 5 4 46 1 0 98 4 3 71 0 1 12 0 1 115 0 2 23 chain 16407 chr8 146364022 + 88037325 88038127 LTR12_ 688 + 94 688 137188 44 557 216 31 4 1 51 1 137 114 chain 2931 chr8 146364022 + 88037831 88037896 LTR12_ 688 + 362 530 226498 18 17 120 30 chain 25942 chr8 146364022 + 88040667 88041063 LOR1b 457 - 9 401 100240 240 1 0 5 8 7 26 46 44 70 chain 23523 chr8 146364022 + 88053760 88054034 AluY 311 + 16 290 112994 107 1 0 9 0 1 157 chain 45593 chr8 146364022 + 88063604 88064118 MER9a3 513 - 0 513 62413 454 1 0 59 chain 33880 chr8 146364022 + 88067352 88067886 MER61F 604 - 32 550 77810 23 14 8 68 17 19 110 23 24 53 2 0 7 2 0 118 9 0 88 chain 43177 chr8 146364022 + 88089650 88090194 L1PA6 6164 - 2 546 65201 24 1 8 112 22 15 385 chain 57450 chr8 146364022 + 88095230 88096307 MER4E1 777 + 5 770 54265 18 1 0 482 0 1 5 6 5 19 28 34 9 317 0 192 chain 13001 chr8 146364022 + 88164567 88164737 MER30 238 - 0 180 148247 117 4 14 49 chain 64113 chr8 146364022 + 88225926 88226821 THE1B-int 1605 - 7 1605 50960 379 1 2 33 10 21 27 30 644 28 7 32 54 0 21 73 0 2 113 0 29 140 chain 10466 chr8 146364022 + 88226921 88227187 THE1B 368 - 100 368 158407 19 117 118 11 2 0 6 0 3 111 chain 20944 chr8 146364022 + 88227581 88227832 AluY 311 + 49 299 124135 74 2 0 9 0 1 166 chain 540234 chr8 146364022 + 88235482 88241502 L1PA3long 6157 - 8 6157 2783 6 0 3 2128 0 4 1339 0 1 1764 8 136 403 0 1 102 21 12 97 0 1 152 chain 47212 chr8 146364022 + 88269618 88270303 MER57-int 2662 - 1691 2621 61036 93 0 8 284 0 4 113 0 243 37 0 5 72 59 44 27 chain 129630 chr8 146364022 + 88276235 88277707 L1PA4 6152 - 9 1479 28170 245 1 0 514 14 13 698 chain 153072 chr8 146364022 + 88286009 88287713 L1PA3long 6157 - 7 1710 24221 171 0 2 588 1 3 326 4 0 425 1 0 188 chain 49207 chr8 146364022 + 88287713 88288253 L1PA3long 6157 + 3907 4451 59519 450 0 4 90 chain 23906 chr8 146364022 + 88313115 88313809 L1PB1 5432 + 2498 3198 18732 12 0 4 223 2 1 148 0 3 309 chain 5049 chr8 146364022 + 88313810 88313864 L1PB 1623 + 738 792 194642 54 chain 266308 chr8 146364022 + 88313868 88316875 L1PA4 6152 + 3137 6152 15376 113 0 3 778 0 3 1118 0 1 148 2 1 57 7 8 167 1 2 616 chain 77056 chr8 146364022 + 88316882 88319119 L1PB1 5432 + 3206 5413 18732 263 0 4 136 1 3 123 0 1 172 0 1 127 0 1 184 0 1 586 1 0 13 13 20 254 30 14 5 1 0 19 1 0 12 18 13 11 2 0 34 0 1 16 2 1 11 13 12 36 1 0 14 2 1 5 1 0 13 51 37 20 1 0 21 1 0 13 1 0 9 chain 554560 chr8 146364022 + 88334031 88340057 L1PA2 6032 - 1 6032 876 1698 0 3 1201 0 1 2887 0 1 240 chain 181805 chr8 146364022 + 88340211 88346921 L1PA8 5853 - 1 3320 20805 92 1 0 16 1 0 51 1 0 14 1 0 13 0 1 16 0 1 5 4176 777 257 1 3 178 0 5 98 0 1 380 2 0 396 0 8 146 1 0 84 0 10 8 16 6 66 13 0 198 0 1 80 4 8 7 0 1 17 2 1 25 1 0 220 19 22 14 1 4 89 chain 3506 chr8 146364022 + 88355640 88355687 MER11A 1151 - 1032 1087 215273 34 0 8 13 chain 48027 chr8 146364022 + 88366636 88367168 L1PA4 6152 - 1 534 60461 454 0 1 78 chain 12336 chr8 146364022 + 88367168 88367301 L1PA4 6152 + 5407 5540 150872 133 chain 83583 chr8 146364022 + 88375113 88376186 L1PA7 6471 - 16 1103 42082 11 1 15 22 0 2 5 6 4 75 2 0 10 1 4 176 1 0 58 1 11 52 4 1 201 7 0 117 6 7 63 1 0 253 chain 157482 chr8 146364022 + 88381956 88383694 L1PA3long 6157 - 0 1738 23665 131 1 0 512 0 1 1094 chain 72178 chr8 146364022 + 88383701 88384493 L1PA3long 6157 + 3630 4422 47388 792 chain 187141 chr8 146364022 + 88389382 88391458 L1PA3long 6157 - 0 2076 20325 2076 chain 26290 chr8 146364022 + 88391459 88391762 L1P1 4361 + 2481 2784 98861 303 chain 525854 chr8 146364022 + 88397361 88403471 L1PA4 6152 + 0 6143 4596 206 6 8 736 0 4 290 1 0 177 0 7 415 0 1 148 0 1 767 6 7 219 0 2 271 0 3 465 0 1 907 2 6 657 0 8 837 chain 3879 chr8 146364022 + 88412441 88412508 MADE1 96 + 3 96 209175 21 1 2 20 1 26 24 chain 84090 chr8 146364022 + 88425839 88426762 L1PA4 6152 + 5230 6152 41858 916 1 0 6 chain 452996 chr8 146364022 + 88433501 88438571 L1PA2 6032 - 0 6030 8652 145 1 0 196 0 1 593 0 1 196 0 1 756 1 0 1004 0 1 423 1 2 50 13 968 672 0 2 656 0 1 107 1 0 255 chain 17312 chr8 146364022 + 88460717 88461037 THE1C 375 - 58 375 134752 86 58 59 58 0 1 53 16 13 34 2 0 13 chain 10579 chr8 146364022 + 88462348 88462667 L1MA4 2864 + 2505 2789 157913 105 163 130 27 2 0 22 chain 130190 chr8 146364022 + 88475643 88477612 L1P3 4156 - 21 1621 28048 19 1 0 9 2 0 275 4 0 502 1 0 68 47 0 96 0 7 9 310 0 373 0 1 4 0 13 16 0 1 34 0 3 70 29 0 100 chain 66865 chr8 146364022 + 88477614 88478392 L1PA7 6471 + 5686 6467 49702 17 0 1 432 0 1 105 0 1 224 chain 14120 chr8 146364022 + 88493192 88493346 L1PA4 6152 - 9 163 144136 154 chain 166037 chr8 146364022 + 88496131 88497977 L1PA3long 6157 - 1 1858 22510 842 0 4 396 0 4 563 0 3 45 chain 142376 chr8 146364022 + 88497977 88499549 L1PA3long 6157 + 2707 4280 25746 905 0 1 667 chain 20133 chr8 146364022 + 88504502 88504730 L1PA7 6471 - 10 239 126736 204 0 1 24 chain 9945 chr8 146364022 + 88528154 88528341 THE1D 372 + 0 165 160859 41 10 4 6 0 2 22 19 0 25 4 6 4 1 0 55 chain 43850 chr8 146364022 + 88546457 88546932 L1PA2 6032 - 5 480 64387 475 chain 227927 chr8 146364022 + 88550484 88553046 L1PA4 6152 - 11 2576 17423 619 0 1 744 0 1 837 0 1 362 chain 342141 chr8 146364022 + 88565490 88569323 L1PA3long 6157 - 0 3841 11827 33 0 3 20 5 0 559 1 2 1182 0 4 443 0 3 724 3 4 489 0 1 374 chain 542907 chr8 146364022 + 88637058 88643061 L1PA2 6032 + 1 6022 2355 254 2 1 41 0 23 44 0 1 192 0 1 462 6 0 1171 0 1 376 0 1 480 1 0 186 0 1 1277 1 0 794 0 1 701 2 0 13 chain 36853 chr8 146364022 + 88648474 88648950 LTR10F 562 + 0 562 73730 124 4 88 20 0 3 263 1 2 5 2 0 57 chain 489763 chr8 146364022 + 88660848 88666421 L1PA4 6152 + 601 6143 7380 135 1 0 195 4 0 124 0 7 149 4 5 460 27 0 1495 1 0 769 0 1 407 0 4 926 4 0 246 7 0 619 chain 83070 chr8 146364022 + 88688558 88689598 MER11B 1079 - 15 1079 42303 84 0 2 101 0 1 47 0 18 38 1 3 223 15 16 34 1 0 34 0 1 462 chain 25976 chr8 146364022 + 88697093 88697622 L1PB1 5432 - 40 513 100112 22 1 0 20 76 60 10 1 0 44 1 0 15 2 1 50 3 1 9 0 6 7 1 0 13 70 31 184 chain 69979 chr8 146364022 + 88697688 88698685 MER11A 1151 + 0 1151 48399 85 0 91 54 1 0 64 4 0 149 0 1 94 0 1 37 0 25 67 11 12 111 19 45 26 16 21 33 12 21 30 1 0 16 0 1 167 chain 10041 chr8 146364022 + 88719433 88719635 THE1C 375 - 21 220 160377 104 9 3 13 45 48 31 chain 33116 chr8 146364022 + 88720552 88720945 MER11B 1079 - 683 1079 79033 82 0 4 46 3 0 12 0 1 155 1 2 94 chain 66244 chr8 146364022 + 88732437 88733236 L1PA7 6471 - 6 808 49984 156 12 11 232 0 1 18 0 3 381 chain 30998 chr8 146364022 + 88733236 88733651 L1P3 4156 - 3033 3442 82261 48 0 1 67 5 4 4 0 1 123 12 0 18 0 8 45 4 1 89 chain 27681 chr8 146364022 + 88734140 88734510 LTR12 884 - 467 884 94110 25 17 15 13 0 25 51 1 26 237 1 0 25 chain 7730 chr8 146364022 + 88735877 88736198 LTR21A 479 - 0 367 172714 24 35 30 14 1 0 66 161 213 20 chain 30077 chr8 146364022 + 88749615 88749934 AluYb8 318 - 0 318 84568 112 1 0 206 chain 44162 chr8 146364022 + 88754739 88755235 L1PA5 6144 + 5635 6131 63997 496 chain 43316 chr8 146364022 + 88765141 88765614 L1PA4 6152 + 5590 6063 65019 473 chain 23940 chr8 146364022 + 88767800 88768153 THE1B 368 - 5 361 110693 33 25 24 92 15 20 25 1 0 162 chain 2970 chr8 146364022 + 88784896 88785124 LTR82A 830 - 474 765 225680 28 176 239 24 chain 27080 chr8 146364022 + 88798281 88798634 THE1B 368 - 0 368 96001 194 3 2 44 0 1 68 0 15 44 chain 55029 chr8 146364022 + 88802404 88803054 L1PA7 6471 + 5812 6462 55691 324 0 1 315 1 0 10 chain 513397 chr8 146364022 + 88805372 88811610 L1PA6 6164 + 0 6160 5843 518 0 2 47 1 0 336 0 4 520 1 4 15 1 0 80 0 1 77 0 1 384 5 5 184 1 0 572 10 21 528 3 1 87 0 1 309 92 0 1175 0 1 1109 4 0 28 8 7 71 0 2 64 2 0 6 chain 4108 chr8 146364022 + 88809056 88809101 L1PA6 6164 + 3703 3748 205797 45 chain 7028 chr8 146364022 + 88815276 88815381 Tigger3a 397 + 148 261 177275 11 1 11 53 2 0 38 chain 39455 chr8 146364022 + 88819073 88819554 L1PB2 3958 - 881 1359 70082 153 1 0 101 1 0 78 1 0 146 chain 53771 chr8 146364022 + 88819556 88820338 L1PB2 3958 + 3070 3837 56491 84 0 1 45 8 12 23 0 1 73 2 0 52 1 0 13 5 0 65 2 0 12 5 0 94 15 14 58 1 0 64 2 1 72 2 0 21 1 0 62 chain 38675 chr8 146364022 + 88830949 88831386 L1PA4 6152 + 5706 6141 71186 211 2 0 224 chain 4195 chr8 146364022 + 88832556 88832682 L1MA3 4352 - 0 115 204612 18 61 52 24 2 0 21 chain 100890 chr8 146364022 + 88832880 88834077 LTR12C 1709 + 0 1709 36542 650 0 278 182 1 0 7 3 1 106 0 4 184 3 236 61 chain 25446 chr8 146364022 + 88853858 88854151 AluY 311 + 8 299 102469 125 2 0 166 chain 3075 chr8 146364022 + 88859286 88859323 MLT1A-int 1186 - 587 624 223454 37 chain 22365 chr8 146364022 + 88886577 88886840 AluSx4 309 + 29 292 118650 263 chain 78044 chr8 146364022 + 88892005 88892873 L1PA3long 6157 - 0 868 44493 868 chain 34851 chr8 146364022 + 88920875 88921575 MER4D1 891 + 0 701 76406 23 3 4 23 7 8 18 0 1 35 10 9 21 20 18 47 4 7 80 0 1 68 1 4 40 140 141 119 7 0 34 chain 9737 chr8 146364022 + 88939420 88939596 L1MA3 4352 + 4134 4311 161900 30 0 1 53 2 6 35 11 9 14 15 13 16 chain 45576 chr8 146364022 + 88948276 88949058 LTR1 825 - 0 804 62435 88 15 15 39 0 1 5 1 0 5 7 10 28 4 6 94 2 0 142 31 32 17 4 16 8 0 23 9 19 19 95 10 0 61 36 30 11 1 0 50 chain 44797 chr8 146364022 + 88949404 88950075 MER50 708 + 0 699 63294 48 22 26 50 8 39 80 16 5 39 12 15 190 16 17 190 chain 4157 chr8 146364022 + 88959789 88959850 MADE1 96 - 0 96 205134 16 0 36 20 1 0 24 chain 103197 chr8 146364022 + 88983200 88984573 LTR12C 1709 + 0 1709 35950 112 1 7 64 0 1 93 15 3 11 0 1 46 0 43 217 13 14 56 4 297 147 1 0 4 4 2 33 0 1 68 1 0 4 11 4 57 0 1 18 5 7 30 0 7 273 12 11 46 0 4 27 chain 54813 chr8 146364022 + 89074438 89075042 L1PA5 6144 + 5537 6141 55829 604 chain 23358 chr8 146364022 + 89112207 89112467 L1PA5 6144 - 890 1150 111953 260 chain 77969 chr8 146364022 + 89112467 89113350 L1PA5 6144 + 5246 6132 44533 785 0 3 98 chain 558808 chr8 146364022 + 89161077 89167109 L1PA2 6032 + 1 6032 425 911 1 0 5120 chain 296658 chr8 146364022 + 89169908 89174256 L1PA5 6144 - 6 3474 13607 122 21 21 565 0 3 132 0 4 843 0 3 138 0 1 42 0 31 384 915 0 570 1 0 44 2 0 71 1 0 289 3 0 205 chain 40724 chr8 146364022 + 89172202 89172657 L1PA3long 6157 - 0 455 68275 455 chain 37363 chr8 146364022 + 89172662 89173070 L1PA3long 6157 + 5297 5705 72268 408 chain 6035 chr8 146364022 + 89174938 89175092 MSTA 426 + 148 296 184932 51 64 58 39 chain 25198 chr8 146364022 + 89192232 89192522 AluSp 311 + 4 294 103750 290 chain 132758 chr8 146364022 + 89234531 89236081 L1PA6 6164 + 4610 6162 27467 327 0 1 432 0 3 453 0 1 165 1 2 162 4 0 6 chain 35426 chr8 146364022 + 89263009 89263398 L1PA2 6032 - 4 393 75647 389 chain 100758 chr8 146364022 + 89263398 89264481 L1PA2 6032 + 4544 5627 36569 1083 chain 25303 chr8 146364022 + 89325906 89326268 THE1B 368 - 0 368 103213 196 15 6 80 27 42 44 chain 52276 chr8 146364022 + 89355830 89356597 L1PA11 4918 - 340 1079 57441 11 2 0 13 1 0 15 54 40 11 3 2 12 2 0 67 2 0 13 2 1 65 5 0 489 chain 48722 chr8 146364022 + 89357911 89358431 L1HS 6032 - 0 520 59933 520 chain 30199 chr8 146364022 + 89358431 89358750 L1HS 6032 + 5179 5498 84193 319 chain 20777 chr8 146364022 + 89361247 89361483 L1PA4 6152 - 16 259 124688 133 0 7 103 chain 20619 chr8 146364022 + 89364761 89364982 AluYa5 310 - 9 229 125227 175 1 0 45 chain 24137 chr8 146364022 + 89369746 89370049 AluSc5 308 - 5 308 109541 6 3 0 59 1 3 211 0 1 23 chain 15521 chr8 146364022 + 89378227 89378408 L1PA6 6164 - 2 185 139827 9 0 2 172 chain 29208 chr8 146364022 + 89392210 89392515 AluYa5 310 - 5 310 88009 305 chain 4463 chr8 146364022 + 89402549 89402640 L1MA8 2339 + 1882 1967 201190 41 7 3 20 10 8 13 chain 48150 chr8 146364022 + 89403680 89404333 L1PA8 5853 - 0 692 60361 44 0 1 47 2 1 15 6 5 38 4 47 47 2 0 44 1 0 224 0 1 69 0 1 77 9 7 24 chain 19462 chr8 146364022 + 89442067 89442295 L1PA5 6144 + 5903 6132 128778 222 0 1 6 chain 32319 chr8 146364022 + 89476183 89476630 L1PA8 5853 - 0 442 80334 93 1 0 16 1 0 40 41 39 57 2 0 25 0 4 15 1 0 49 2 0 104 chain 21611 chr8 146364022 + 89477146 89477399 AluY 311 + 39 289 121725 87 3 0 163 chain 16288 chr8 146364022 + 89493184 89493387 L1PA13 3608 - 2631 2834 137510 203 chain 52650 chr8 146364022 + 89502884 89503513 L1PA6 6164 - 1198 1825 57168 104 4 1 182 0 1 339 chain 101347 chr8 146364022 + 89503513 89504695 L1PA6 6164 + 4971 6150 36432 161 7 0 232 0 1 168 3 6 611 chain 11817 chr8 146364022 + 89509793 89510056 L1PB1 5432 + 5172 5411 152954 48 2 1 10 8 7 41 2 1 12 28 16 18 9 6 14 2 0 24 1 0 20 3 1 13 1 0 7 chain 128316 chr8 146364022 + 89510927 89512539 L1PA8 5853 - 0 2144 28489 93 1 0 19 2 1 47 1 0 14 2 1 70 3 1 45 1 0 205 1 18 142 0 10 101 3 512 234 1 0 426 0 4 201 chain 200284 chr8 146364022 + 89544292 89546500 L1PA3long 6157 - 0 2218 19186 65 2 0 1728 0 4 74 0 8 339 chain 95676 chr8 146364022 + 89582986 89584092 L1PA5 6144 + 5021 6137 37907 125 0 5 82 0 1 63 1 5 835 chain 533952 chr8 146364022 + 89586322 89592445 L1PA4 6152 + 6 6140 3710 224 0 1 1228 1 2 509 3 11 48 0 1 170 0 2 118 1 0 100 0 3 747 0 1 1493 0 1 575 0 1 60 8 1 838 chain 250000 chr8 146364022 + 89620425 89623900 HERVK22-int 3844 - 375 3828 16255 4 1 0 25 16 12 18 64 77 12 1 0 4 37 25 45 1 0 10 5 1 37 3 1 20 1 0 50 12 10 71 1 0 1017 5 1 6 0 4 345 0 1 150 23 23 252 12 13 126 21 9 62 15 16 5 1 0 94 0 1 6 11 10 267 0 2 336 5 6 245 6 7 27 chain 4296 chr8 146364022 + 89639062 89639185 L1MA4A 3247 - 68 184 203290 31 55 48 37 chain 8551 chr8 146364022 + 89648599 89648773 MLT1B 390 + 218 390 168013 27 2 0 17 0 1 4 47 46 77 chain 8512 chr8 146364022 + 89651722 89651816 L1PA7 6471 - 9 103 168233 94 chain 116331 chr8 146364022 + 89658215 89659508 L1PA4 6152 - 856 2149 32328 1293 chain 74207 chr8 146364022 + 89659509 89660343 L1PA4 6152 + 5301 6136 46407 88 0 1 746 chain 13334 chr8 146364022 + 89682509 89682669 AluY 311 + 8 172 146957 44 1 5 115 chain 40799 chr8 146364022 + 89684656 89685229 HERVK11-int 2540 - 305 853 68178 66 7 0 57 23 10 72 13 12 98 0 2 81 1 0 106 17 12 32 chain 564701 chr8 146364022 + 89697934 89703966 L1HS 6032 + 0 6032 219 6032 chain 123714 chr8 146364022 + 89704142 89705552 L1PA4 6152 - 0 1412 29805 6 0 5 139 0 3 697 8 1 60 0 1 500 chain 2297 chr8 146364022 + 89744671 89744740 MLT1A 405 + 268 339 235402 13 18 19 13 5 6 20 chain 4202 chr8 146364022 + 89751531 89751584 MER53 195 - 12 65 204512 53 chain 292737 chr8 146364022 + 89756139 89759650 HERVH-int 3825 - 0 3825 13840 225 0 2 160 0 2 97 9 219 39 9 11 323 0 1 299 1 0 149 0 1 88 1 0 490 7 34 752 0 1 150 0 3 14 0 2 6 0 1 55 12 70 13 1 14 24 1 0 9 3 2 37 5 0 480 1 2 4 1 0 46 chain 6928 chr8 146364022 + 89759660 89759757 LTR7B 505 - 10 106 177980 41 14 13 42 chain 443523 chr8 146364022 + 89782089 89787672 HERVL-int 5654 + 0 5654 8936 451 0 1 65 9 19 139 0 1 59 0 4 94 0 1 204 8 38 33 1 2 69 11 39 651 8 0 79 2 4 128 1 2 59 0 2 40 4 5 400 0 1 810 0 2 379 0 1 184 0 2 132 1 2 114 0 1 566 4 2 126 0 1 6 0 1 306 12 0 98 0 1 330 chain 26501 chr8 146364022 + 89787672 89788102 MLT2A1 477 + 0 396 98040 141 74 47 40 8 0 156 0 1 11 chain 78615 chr8 146364022 + 89838327 89839195 L1PA3long 6157 - 0 867 43976 849 1 0 18 chain 95532 chr8 146364022 + 89839195 89840244 L1PA3long 6157 + 4224 5273 37948 1049 chain 43536 chr8 146364022 + 89850666 89851149 L1PA5 6144 - 5 488 64758 483 chain 29454 chr8 146364022 + 89859808 89860170 L1PA7 6471 - 2266 2627 86151 267 8 7 87 chain 180030 chr8 146364022 + 89860170 89862384 L1PA7 6471 + 4217 6456 20989 310 0 1 137 0 4 143 0 3 45 8 14 64 4 9 114 0 1 118 0 1 440 0 3 511 1 0 173 1 3 145 chain 553271 chr8 146364022 + 89866869 89873006 L1PA3long 6157 - 0 6151 1041 144 1 8 101 1 0 225 1 3 403 0 1 1374 0 2 206 0 1 1038 0 2 2643 chain 296837 chr8 146364022 + 89910482 89915284 L1PA6 6164 + 2331 6162 13599 51 24 57 11 5 3 306 1024 0 430 0 1 50 0 4 454 1 0 307 0 3 37 0 4 79 0 2 216 2 0 5 1 6 5 3 0 48 0 2 272 3 12 96 20 13 85 8 9 347 7 8 59 1 2 53 0 1 256 0 5 526 4 0 6 chain 137115 chr8 146364022 + 89942307 89943979 L1PA7 6471 + 4570 6246 26617 55 1 0 408 0 1 585 8 12 615 chain 6396 chr8 146364022 + 89960954 89961293 MLT1A0 366 - 28 356 182062 74 220 216 19 13 6 13 chain 236044 chr8 146364022 + 89986454 89989366 L1PA7 6471 + 3520 6467 16976 774 0 9 220 0 4 418 8 4 22 0 2 260 0 15 29 1 0 4 0 1 342 3 0 176 1 0 59 0 3 371 0 4 71 10 16 143 chain 3075 chr8 146364022 + 90014100 90014136 MLT2B4 540 - 0 36 223453 36 chain 36807 chr8 146364022 + 90019149 90019667 MLT2A2 560 + 0 560 73793 84 0 11 74 13 29 103 17 19 88 0 11 70 0 2 69 chain 14946 chr8 146364022 + 90021179 90021516 L1PB1 5432 + 5103 5413 141480 13 4 8 14 1 0 9 16 11 9 2 0 53 3 2 15 1 0 44 1 0 15 3 0 7 14 5 18 12 9 11 2 0 18 7 6 21 1 0 13 1 0 9 chain 24335 chr8 146364022 + 90026428 90026721 AluY 311 + 10 304 108443 113 0 1 180 chain 31593 chr8 146364022 + 90033986 90034522 L1PB1 5432 - 8 510 81506 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 9 13 10 19 23 12 16 1 0 43 1 0 17 1 0 53 2 0 9 16 11 9 1 0 24 1 0 11 3 1 180 chain 390542 chr8 146364022 + 90034540 90039304 L1PA6 6164 - 13 4784 10434 135 24 26 158 0 1 2446 19 13 96 0 2 50 2 0 5 15 17 12 7 8 94 1 0 260 0 1 493 0 1 256 0 1 11 7 12 673 chain 93653 chr8 146364022 + 90042407 90043441 L1PA3long 6157 + 5116 6150 38457 1034 chain 14869 chr8 146364022 + 90054637 90054833 MER107 203 - 0 202 141721 22 3 0 10 0 9 161 chain 63359 chr8 146364022 + 90055212 90056277 MER11B 1079 + 0 1051 51294 200 3 5 252 18 17 22 41 30 10 8 8 29 9 10 55 6 0 7 104 99 14 39 43 24 0 1 53 0 1 171 chain 108683 chr8 146364022 + 90100915 90102110 L1PA3long 6157 + 4962 6157 34518 1195 chain 8113 chr8 146364022 + 90151261 90151366 L1P1 4361 + 4195 4299 170422 99 1 0 5 chain 88061 chr8 146364022 + 90163997 90165216 L1PA8 5853 + 4669 5847 40350 70 1 0 79 5 6 182 12 6 167 1 3 159 0 1 180 0 1 39 1 0 19 43 0 27 14 0 76 15 18 33 1 18 7 1 0 87 chain 313425 chr8 146364022 + 90167503 90170967 L1PA3long 6157 + 2675 6142 12876 1109 0 1 1347 0 2 1008 chain 459800 chr8 146364022 + 90175103 90180440 L1PA4 6152 + 3 6138 8407 300 10 11 1366 1 0 521 0 2 1512 0 792 797 0 4 590 1 0 122 1 2 116 chain 9648 chr8 146364022 + 90192315 90192574 L1MA8 2339 + 2026 2264 162360 53 23 21 17 26 10 27 3 8 19 0 1 8 26 20 23 2 0 23 1 0 8 chain 131618 chr8 146364022 + 90203193 90204643 L1PA3long 6157 + 4557 6007 27711 1450 chain 12389 chr8 146364022 + 90204652 90204794 L1PA3long 6157 + 6011 6153 150674 142 chain 73902 chr8 146364022 + 90222803 90223873 MER11A 1151 + 0 1146 46563 55 0 99 24 8 0 52 0 4 57 7 3 134 15 16 19 0 1 74 0 1 111 0 13 21 0 1 125 0 26 26 43 0 24 22 5 29 0 1 60 6 7 158 chain 543816 chr8 146364022 + 90230418 90236592 L1PA3long 6157 + 6 6157 2236 1310 0 1 129 1 0 243 1 0 342 1 0 4 0 1 114 46 0 175 0 1 2464 0 23 498 1 4 69 2 0 506 2 1 108 1 0 8 0 1 149 chain 33642 chr8 146364022 + 90246145 90246563 LTR10F 562 - 0 533 78184 331 0 115 87 chain 203384 chr8 146364022 + 90247221 90250692 HERVIP10FH-int 2884 - 60 2735 18969 35 10 4 13 1 0 17 1 0 50 1 0 66 1 0 365 1 0 17 0 11 157 3 1 40 1 0 262 3 2 20 1 0 3 10 0 39 22 10 43 21 3 14 62 39 13 17 6 49 6 5 4 0 1 66 5 0 63 1 0 8 1 0 7 3 0 11 4 1 175 2 0 86 26 26 694 3 0 45 695 0 133 11 7 64 chain 48129 chr8 146364022 + 90249793 90250474 LTR30 714 + 0 704 60381 224 0 8 21 0 5 176 16 27 163 1 0 5 33 34 29 1 0 12 chain 6832 chr8 146364022 + 90267358 90267478 MER1B 344 - 5 128 178713 17 5 6 35 15 17 48 chain 21638 chr8 146364022 + 90289760 90290128 THE1D 372 + 10 360 121621 5 3 0 26 12 0 59 0 1 27 0 4 37 35 25 12 7 6 59 0 3 54 0 1 11 1 0 20 chain 4017 chr8 146364022 + 90308982 90309031 MLT1D 503 - 187 235 207118 40 1 0 8 chain 3963 chr8 146364022 + 90311757 90311804 Tigger3b 1229 + 38 85 207940 47 chain 32495 chr8 146364022 + 90313355 90313715 L1PA4 6152 - 535 895 80033 360 chain 44515 chr8 146364022 + 90313715 90314230 L1PA4 6152 + 5632 6152 63561 509 0 5 6 chain 55010 chr8 146364022 + 90321983 90322616 SVA_C 1631 - 23 659 55698 369 5 9 212 1 0 46 chain 6418 chr8 146364022 + 90341450 90341523 L1MA5A 2387 + 2230 2302 181880 65 1 0 7 chain 32832 chr8 146364022 + 90342580 90342974 L1PA7 6471 + 6069 6470 79488 157 0 10 72 2 0 103 1 0 59 chain 30071 chr8 146364022 + 90358605 90358973 THE1B 368 - 0 368 84599 368 chain 115737 chr8 146364022 + 90364893 90366426 THE1B-int 1605 - 5 1605 32548 198 11 0 67 3 4 155 0 40 32 6 0 177 0 1 324 0 1 66 0 1 76 25 65 393 chain 23727 chr8 146364022 + 90379828 90380118 AluSc 308 + 9 293 111895 80 6 0 204 chain 527404 chr8 146364022 + 90386145 90392291 L1PA4 6152 + 0 6138 4457 353 4 5 460 0 17 5 17 0 876 1 0 292 2 3 150 0 1 483 1 0 1266 0 1 28 0 1 575 6 0 119 1 0 60 0 2 20 4 0 265 0 1 50 1 2 231 0 1 115 1 0 704 5 1 51 chain 16418 chr8 146364022 + 90393048 90393240 L1PA4 6152 + 5817 6005 137157 75 1 0 108 3 0 5 chain 11138 chr8 146364022 + 90393240 90393374 L1PA4 6152 + 6009 6143 155675 134 chain 33998 chr8 146364022 + 90401620 90401990 L1PA2 6032 - 2348 2718 77244 370 chain 211651 chr8 146364022 + 90401990 90404322 L1PA2 6032 + 3698 6030 18383 2168 5 0 7 1 6 151 chain 10560 chr8 146364022 + 90407644 90407875 MER30 238 + 0 223 157995 14 36 44 12 1 2 27 21 9 13 2 0 70 3 0 32 chain 28480 chr8 146364022 + 90415600 90415953 THE1A 353 + 0 353 91260 50 0 1 58 2 1 243 chain 15312 chr8 146364022 + 90420508 90420765 HERV35I-int 1679 + 1325 1571 140456 71 2 1 63 26 23 71 7 0 17 chain 16072 chr8 146364022 + 90423362 90423633 L1MA5A 2387 + 2067 2299 138142 6 5 0 34 1 0 51 2 0 29 1 0 28 1 0 15 28 0 65 1 0 4 chain 6126 chr8 146364022 + 90427405 90427492 MER50 708 - 622 708 184220 28 3 0 11 1 3 44 chain 251777 chr8 146364022 + 90439688 90443045 L1PA7 6471 + 3416 6461 16136 287 0 1 131 0 1 99 327 0 21 1 0 38 0 1 406 0 1 219 1 0 47 0 4 412 6 0 33 0 4 500 3 13 106 0 1 281 2 1 305 0 1 132 chain 160220 chr8 146364022 + 90456021 90457799 L1PA3long 6157 - 10 2246 23307 1449 0 457 296 0 1 33 chain 16914 chr8 146364022 + 90457803 90457996 L1PA3long 6157 + 3695 3888 135815 4 1 0 176 0 1 12 chain 444952 chr8 146364022 + 90461459 90467050 HERVL-int 5654 + 0 5654 8905 90 18 21 15 0 4 286 1 3 67 0 15 454 0 2 546 4 0 191 0 1 33 6 7 145 1 8 193 0 9 243 0 1 399 0 1 33 10 0 461 43 43 858 0 2 232 0 4 74 0 9 47 13 12 393 0 3 453 4 4 16 0 2 48 0 9 140 0 3 74 chain 350481 chr8 146364022 + 90469773 90473864 L1P1 4361 + 4 4106 11582 718 0 3 142 0 2 145 1 0 509 1 0 4 0 1 503 6 20 106 0 1 667 8 0 1281 chain 24663 chr8 146364022 + 90498105 90498479 THE1C 375 + 0 375 106657 70 11 0 9 8 22 79 0 1 4 14 12 152 1 0 26 chain 17731 chr8 146364022 + 90513361 90513568 L1PA5 6144 + 5933 6140 133618 207 chain 22405 chr8 146364022 + 90515126 90515481 THE1B 368 + 0 368 118463 102 1 2 65 1 0 32 40 43 27 5 15 82 chain 181729 chr8 146364022 + 90521843 90523846 L1PA3long 6157 - 8 2019 20814 1774 4 12 225 chain 188556 chr8 146364022 + 90523847 90525962 L1HS 6032 + 1170 3285 20188 2115 chain 11115 chr8 146364022 + 90538384 90538621 MER30 238 + 0 235 155758 15 31 32 53 37 35 68 6 5 27 chain 63678 chr8 146364022 + 90544457 90545166 L1PA4 6152 - 0 711 51153 142 1 0 341 0 3 225 chain 4195 chr8 146364022 + 90545407 90545454 MLT1E2 623 + 386 433 204622 47 chain 547304 chr8 146364022 + 90547469 90553498 L1PA2 6032 + 11 6031 1795 246 1 0 226 1 0 429 1 0 2139 4 1 1177 0 4 438 4 0 1019 3 0 341 chain 10480 chr8 146364022 + 90564240 90564365 L1PA7 6471 - 4 127 158334 7 2 0 116 chain 523722 chr8 146364022 + 90564569 90570297 L1PA2 6032 - 0 5735 4791 852 0 4 4133 1 4 742 chain 40986 chr8 146364022 + 90599050 90599799 L1PA14 3548 - 92 822 67926 33 1 4 4 1 0 17 1 0 5 1 0 16 4 2 34 14 9 110 2 1 52 12 11 21 1 0 6 30 24 56 17 17 10 23 24 16 0 1 30 2 0 11 6 4 143 1 0 69 chain 100756 chr8 146364022 + 90608936 90610085 L1PA3long 6157 - 0 1152 36571 333 0 1 129 0 1 460 0 1 227 chain 233595 chr8 146364022 + 90610086 90612651 L1PA3long 6157 + 2420 4985 17107 2565 chain 5246 chr8 146364022 + 90655687 90655751 L1MA5 2750 + 544 608 192559 64 chain 19780 chr8 146364022 + 90658050 90658260 AluYa5 310 - 10 220 127871 210 chain 40376 chr8 146364022 + 90668636 90669093 L1PA5 6144 - 12 469 68768 457 chain 3833 chr8 146364022 + 90670577 90670624 L1MA5A 2387 + 2248 2295 209883 47 chain 73766 chr8 146364022 + 90672283 90673109 L1PA4 6152 - 7 833 46640 826 chain 3520 chr8 146364022 + 90673109 90673146 L1PA4 6152 + 5902 5939 215059 37 chain 18820 chr8 146364022 + 90673147 90673360 L1PA4 6152 + 5939 6152 130609 213 chain 20402 chr8 146364022 + 90674625 90674959 THE1C 375 - 20 375 125889 40 1 0 4 3 4 65 4 17 33 5 6 47 25 32 107 chain 120120 chr8 146364022 + 90674967 90676493 THE1C-int 1605 - 8 1588 31019 60 1 0 785 6 0 295 18 25 261 1 55 99 chain 449988 chr8 146364022 + 90685302 90690503 L1PA5 6144 + 931 6144 8767 82 1 0 798 0 1 382 0 2 229 15 16 260 0 1 240 0 2 822 4 5 478 0 1 1044 0 5 326 0 1 506 3 1 11 chain 326667 chr8 146364022 + 90691568 90696163 L1PA11 4918 + 8 4578 12317 26 10 8 36 2 0 6 3 2 16 14 13 13 2 0 53 16 15 16 2 0 6 2 1 255 1 0 401 0 3 344 0 3 131 49 1 91 12 6 60 0 5 10 35 0 66 0 1 216 1 2 111 0 80 90 0 5 89 3 5 142 1 0 119 1 0 92 6 1 124 0 3 7 3 0 36 1 0 217 0 1 14 8 9 208 0 1 17 1 0 10 3 4 255 5 6 59 0 2 128 3 4 204 0 4 408 0 1 58 5 0 65 2 1 13 2 0 67 2 0 13 2 1 12 52 39 15 1 0 13 2 0 11 chain 27155 chr8 146364022 + 90697002 90697411 MER4A 717 + 268 703 95739 63 5 22 35 1 18 17 20 17 54 6 1 208 chain 3382 chr8 146364022 + 90700287 90700334 L1PA10 4194 - 51 95 217438 27 3 0 17 chain 157469 chr8 146364022 + 90710428 90712375 SVA_D 2077 + 60 2077 23666 44 0 27 335 0 76 145 0 40 181 2 0 8 3 1 11 1 39 63 1 0 6 42 16 40 0 1 118 48 0 173 1 0 4 24 0 13 4 0 43 1 0 185 1 0 7 1 0 423 1 0 18 chain 2956 chr8 146364022 + 90711228 90711270 SVA_D 2077 + 1137 1179 66508 42 chain 3378 chr8 146364022 + 90711428 90711476 SVA_D 2077 + 1338 1387 66508 8 0 1 40 chain 9890 chr8 146364022 + 90720249 90720406 MLT1F 544 - 0 163 161121 37 0 1 18 3 0 34 13 21 52 chain 537757 chr8 146364022 + 90720424 90726569 L1PA4 6152 + 13 6152 3191 1392 4 0 1889 4 0 213 0 1 1421 0 1 962 1 0 108 1 5 7 3 0 140 chain 12199 chr8 146364022 + 90728864 90729010 THE1D 372 + 224 370 151429 146 chain 28809 chr8 146364022 + 90746453 90746826 THE1B 368 - 0 368 89844 31 1 0 37 2 0 59 0 3 38 4 0 36 1 0 164 chain 37160 chr8 146364022 + 90748540 90749039 LTR6B 557 + 0 547 73297 22 7 35 15 0 15 314 2 0 27 3 7 58 0 1 6 0 1 33 0 1 12 chain 388204 chr8 146364022 + 90749478 90755184 L1PB1 5432 + 30 5387 10510 18 14 11 19 1 14 241 0 2 216 0 1 197 7 6 10 0 1 286 3 4 78 0 10 41 1 0 4 0 1 88 8 7 107 26 10 114 17 19 427 7 6 77 12 0 11 12 24 93 1 0 322 5 0 82 0 5 155 3 1 104 2 0 49 0 3 257 4 12 96 5 6 333 0 5 129 1 0 478 325 0 221 5 6 145 0 1 42 16 1 419 0 1 6 2 1 50 3 2 11 0 1 19 30 22 11 12 10 41 2 1 16 1 0 44 1 0 15 1 0 4 6 4 7 8 0 12 32 27 20 1 0 17 chain 27925 chr8 146364022 + 90760495 90760796 AluYb8 318 + 0 313 93262 136 0 12 165 chain 15418 chr8 146364022 + 90797682 90797903 Tigger4b 360 + 142 360 140142 22 1 0 139 13 11 46 chain 4674 chr8 146364022 + 90811284 90811345 MLT1C 463 + 342 403 198818 61 chain 16115 chr8 146364022 + 90811664 90811870 LTR24B 570 + 110 315 138010 75 1 0 130 chain 15468 chr8 146364022 + 90815639 90815844 L1PA8 5853 - 0 201 139994 90 1 0 22 2 1 53 1 0 8 1 0 27 chain 41551 chr8 146364022 + 90817398 90817922 MER41A 554 + 13 554 67220 185 0 2 114 0 1 47 0 13 38 0 1 140 chain 241530 chr8 146364022 + 90831611 90834359 L1PA5 6144 - 12 2771 16695 758 1 5 68 0 4 944 0 4 936 1 0 40 chain 23215 chr8 146364022 + 90850788 90851064 AluSp 311 - 25 303 114621 175 1 0 4 0 1 67 0 2 29 chain 5765 chr8 146364022 + 90878063 90878130 MER34 540 + 419 486 187479 67 chain 5943 chr8 146364022 + 90912948 90913040 U6 107 - 0 95 185749 61 11 14 20 chain 20392 chr8 146364022 + 90919804 90920221 L1PA13 3608 - 67 416 125921 6 1 0 9 1 0 8 1 0 16 6 1 10 6 3 22 1 0 18 8 4 48 2 0 10 1 0 52 1 0 48 14 0 13 2 0 43 36 4 34 chain 2128 chr8 146364022 + 90920159 90920186 L1PA13 3608 - 390 417 237409 27 chain 15147 chr8 146364022 + 90935756 90935970 MER47A 366 + 109 322 140927 157 15 14 42 chain 53331 chr8 146364022 + 90989294 90989980 L1PA8 5853 - 0 678 56813 92 2 1 16 1 0 56 2 1 8 1 0 70 2 0 47 1 0 80 18 14 243 0 3 47 chain 8177 chr8 146364022 + 91009642 91009738 MSTA 426 - 330 426 170085 96 chain 15744 chr8 146364022 + 91012646 91012853 PABL_A 660 - 0 208 139130 38 5 6 164 chain 351041 chr8 146364022 + 91035947 91039990 L1PA5 6144 - 3 4046 11568 13 3 0 128 5 6 6 1 0 694 1 0 334 2 0 641 1 2 489 1 0 626 0 1 150 0 1 669 0 3 63 0 1 216 chain 80790 chr8 146364022 + 91052707 91053733 L1PA7 6471 - 7 1025 43272 5 3 0 149 12 13 541 0 3 50 2 0 4 0 1 77 27 19 156 chain 500970 chr8 146364022 + 91057493 91063412 L1PA5 6144 + 216 6144 6785 309 4 0 640 16 7 72 0 1 260 0 3 191 0 1 92 0 2 139 0 2 378 2 1 881 2 1 473 4 1 349 2 14 293 0 1 209 0 1 98 1 0 133 0 1 502 1 5 868 chain 29239 chr8 146364022 + 91069184 91069495 AluYa5 310 - 0 310 87852 184 1 0 126 chain 3462 chr8 146364022 + 91069510 91069622 L1ME3A 1206 - 639 752 215957 24 56 57 32 chain 13703 chr8 146364022 + 91101803 91102092 L1PB1 5432 - 8 270 145590 4 1 0 16 2 1 12 1 0 20 7 6 19 2 0 14 8 5 19 16 5 7 3 0 15 1 0 44 1 0 16 2 1 18 0 1 34 2 0 5 chain 30100 chr8 146364022 + 91102451 91102885 LTR7Y 441 - 0 441 84495 197 20 58 12 36 14 57 9 0 103 chain 290957 chr8 146364022 + 91104141 91107662 HERVH-int 3825 - 0 3825 13965 141 0 2 82 3 8 254 8 218 31 17 19 651 1 0 30 7 8 155 0 1 200 0 10 297 10 35 241 0 1 300 2 0 209 0 1 149 0 3 13 0 2 7 0 1 56 3 2 42 1 52 24 1 0 10 1 0 35 5 0 155 6 10 92 4 0 278 chain 30005 chr8 146364022 + 91107662 91108096 LTR7Y 441 - 0 441 84792 197 68 84 57 9 0 103 chain 3877 chr8 146364022 + 91125369 91125416 MER63A 208 - 58 105 209204 47 chain 4777 chr8 146364022 + 91190289 91190358 MER63B 433 + 335 400 197619 58 4 0 7 chain 478576 chr8 146364022 + 91215567 91222542 L1PA7 6471 + 460 6462 7780 137 0 13 79 30 28 113 0 1 4 1 0 400 11 15 162 0 14 205 1 0 161 0 1 492 0 1 348 1 2 31 1041 8 18 0 3 671 0 1 18 0 4 94 6 4 17 0 4 40 0 4 283 1 0 148 0 1 15 11 7 1028 11 22 92 3 7 286 1 2 177 2 1 11 0 1 69 0 1 81 0 1 354 0 2 159 2 0 7 14 15 139 chain 30077 chr8 146364022 + 91218345 91218774 LTR10F 562 + 0 513 84575 107 0 56 46 1 32 15 7 0 10 9 15 148 2 0 6 0 2 38 2 0 38 chain 17853 chr8 146364022 + 91252641 91252840 L1PA3long 6157 + 5959 6157 133231 49 1 0 149 chain 3848 chr8 146364022 + 91266602 91266644 L1MEf 1413 + 765 807 209663 42 chain 101501 chr8 146364022 + 91270991 91272420 L1PA13 3608 + 2153 3548 36396 265 4 0 53 0 1 200 4 0 17 0 2 283 20 21 137 1 0 27 2 1 114 2 0 61 4 3 58 2 0 48 2 0 4 2 0 20 2 1 18 0 3 7 18 7 12 17 10 9 4 1 12 chain 533424 chr8 146364022 + 91276334 91282470 L1PA4 6152 + 2 6143 3786 437 1 0 396 8 1 590 1 0 25 0 4 367 0 1 474 4 5 922 0 1 69 0 1 643 0 1 1359 0 4 692 0 1 148 chain 4503 chr8 146364022 + 91286646 91286697 THE1B 368 + 317 368 200747 51 chain 25062 chr8 146364022 + 91288271 91288624 THE1B 368 + 0 368 104501 169 1 0 28 32 46 55 1 3 67 chain 3211 chr8 146364022 + 91291661 91291695 LTR34 700 - 215 249 220720 34 chain 22609 chr8 146364022 + 91309103 91309458 THE1C 375 - 0 366 117548 126 65 76 164 chain 224887 chr8 146364022 + 91345469 91348507 L1HS 6032 + 1 2987 17604 133 37 36 82 5 4 322 12 13 115 6 13 48 139 11 301 34 100 631 1 0 305 0 1 546 6 10 315 chain 25723 chr8 146364022 + 91352084 91352405 THE1A 353 + 0 321 101203 109 2 1 69 0 1 141 chain 124179 chr8 146364022 + 91352438 91353977 THE1A-int 1579 + 13 1568 29639 11 0 1 88 0 1 766 0 3 261 1 9 86 0 2 133 1 2 192 chain 42242 chr8 146364022 + 91372567 91373038 L1PA3long 6157 - 0 474 66345 146 0 3 325 chain 3033 chr8 146364022 + 91378380 91378417 MLT1J2-int 891 - 538 575 224346 37 chain 7213 chr8 146364022 + 91387735 91387861 THE1B 368 - 0 125 175984 16 4 7 5 3 0 28 7 6 63 chain 495783 chr8 146364022 + 91388048 91393817 L1PA5 6144 + 378 6143 7085 434 0 1 250 10 8 5 0 2 59 0 1 795 0 2 73 10 0 362 1 3 425 2 3 365 3 4 79 0 3 10 0 1 335 0 1 1136 0 3 54 1 2 589 1 0 507 0 1 77 16 5 170 chain 331392 chr8 146364022 + 91401103 91405136 L1PA7 6471 + 2437 6470 12149 196 11 0 39 1 0 217 0 4 203 0 4 160 0 1 236 1 0 221 1 0 100 0 1 792 4 0 343 0 3 413 0 1 157 2 1 92 7 6 71 0 2 287 0 3 313 5 13 7 8 0 115 2 3 29 chain 546921 chr8 146364022 + 91405614 91411758 L1PA3long 6157 - 0 6157 1839 1259 0 1 1037 0 1 517 2 1 78 0 4 77 5 6 895 0 2 901 0 1 795 0 4 578 chain 5321 chr8 146364022 + 91414226 91414434 L1MA4A 3247 - 1271 1474 191816 35 108 102 33 10 11 22 chain 43373 chr8 146364022 + 91421902 91422448 MLT2A2 560 - 0 557 64965 70 0 1 72 0 11 222 2 1 180 chain 439172 chr8 146364022 + 91422451 91428572 HERVL-int 5654 - 0 5654 9074 75 0 1 88 0 107 16 0 3 27 32 31 199 1 11 678 1 0 1077 0 1 1335 0 1 301 0 1 85 0 1 121 14 0 7 1 15 318 0 1 25 11 10 247 1 6 76 255 9 215 1 0 90 10 16 337 345 0 23 17 8 92 chain 48799 chr8 146364022 + 91495289 91495926 L1PA7 6471 - 98 731 59875 185 0 38 11 42 0 399 chain 175529 chr8 146364022 + 91495926 91498178 L1PBa 3878 + 1385 3637 21391 59 0 2 176 2 0 35 3 0 173 0 1 298 2 0 201 0 2 191 1 2 28 5 3 151 0 1 30 1 0 94 6 7 210 1 2 171 3 0 165 0 4 246 chain 145931 chr8 146364022 + 91498191 91500000 L1PA6 6164 - 8 1767 25182 190 5 6 159 1 0 136 0 1 249 1 4 91 1 5 295 62 5 4 1 0 614 chain 363986 chr8 146364022 + 91500000 91504391 L1P2 5180 - 791 5178 11261 545 6 5 68 0 1 75 1 0 512 1 0 820 1 0 331 0 1 309 0 1 197 0 1 81 0 2 427 1 0 220 2 1 5 1 0 224 1 0 48 1 0 254 14 14 97 2 1 147 chain 7567 chr8 146364022 + 91510029 91510234 L1P5 443 + 130 342 173750 30 91 98 84 chain 23331 chr8 146364022 + 91515428 91515683 AluYb8 318 + 64 316 114022 194 3 0 58 chain 6309 chr8 146364022 + 91523395 91523469 5S 121 + 46 120 182722 74 chain 38986 chr8 146364022 + 91525074 91525606 L1PA11 4918 + 3966 4508 70757 351 1 0 5 15 29 44 1 0 9 2 0 54 0 3 11 2 0 16 1 0 20 chain 11404 chr8 146364022 + 91582587 91582752 AluSp 311 - 11 174 154681 92 4 3 27 6 5 36 chain 26026 chr8 146364022 + 91598907 91599202 AluY 311 + 9 300 99911 117 4 0 174 chain 5698 chr8 146364022 + 91618018 91618479 LTR12D 1347 - 156 760 188134 17 26 127 23 20 0 10 299 320 45 0 41 21 chain 94448 chr8 146364022 + 91669448 91670596 MER11A 1151 - 8 1151 38222 281 3 0 54 13 12 30 0 1 16 0 4 449 0 2 116 8 0 178 chain 4307 chr8 146364022 + 91691645 91691709 MSTA 426 - 77 162 203123 32 3 24 29 chain 9751 chr8 146364022 + 91695053 91695178 MER61-int 3695 + 729 903 161842 90 0 49 35 chain 2021 chr8 146364022 + 91696140 91696255 LTR5_Hs 974 + 0 115 119994 115 chain 76348 chr8 146364022 + 91696259 91697227 LTR5_Hs 974 + 0 974 45291 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 2829 chr8 146364022 + 91697234 91697395 LTR5_Hs 974 + 128 289 119994 161 chain 32293 chr8 146364022 + 91697395 91697760 LTR5_Hs 974 + 290 656 80376 177 0 1 188 chain 11315 chr8 146364022 + 91697761 91697924 LTR5_Hs 974 + 656 819 155015 163 chain 8831 chr8 146364022 + 91697970 91698074 LTR5_Hs 974 + 870 974 166486 104 chain 43950 chr8 146364022 + 91729375 91729888 MER9a2 513 + 0 513 64264 513 chain 94476 chr8 146364022 + 91730559 91731740 L1PA8 5853 + 4680 5853 38214 326 2 0 12 1 0 110 1 2 45 1 0 179 1 2 201 6 5 47 2 0 8 0 1 61 1 0 13 1 0 52 1 0 16 2 1 92 chain 467806 chr8 146364022 + 91741031 91746732 L1PA6 6164 - 4 5734 8119 51 20 21 315 0 2 113 20 22 223 0 3 34 0 1 203 0 5 469 0 26 226 1 2 680 0 1 232 0 1 112 8 9 219 0 1 859 20 6 878 1 0 81 0 1 258 1 8 164 0 2 147 22 9 26 10 11 172 1 0 48 0 2 87 chain 278379 chr8 146364022 + 91757256 91760891 L1PA10 4194 - 48 3762 14733 30 4 1 169 0 1 289 1 0 4 0 1 128 7 14 425 0 6 107 0 6 120 0 1 144 0 3 7 0 51 10 1 2 160 0 1 727 1 0 4 0 1 82 11 13 341 0 1 34 7 11 298 17 19 6 2 0 439 14 12 46 chain 24364 chr8 146364022 + 91762062 91762322 AluYa5 310 - 12 272 108297 260 chain 39912 chr8 146364022 + 91764649 91765085 L1PA4 6152 + 5715 6151 69440 436 chain 89551 chr8 146364022 + 91772439 91774122 L1MA1 4479 - 328 1654 39794 9 1 0 35 2 0 29 1 0 104 37 34 81 1 0 14 2 0 19 1 0 63 1 0 8 1 0 16 2 0 25 1 0 21 0 1 115 0 1 57 2 0 130 3 1 40 359 22 12 12 7 36 13 8 12 1 0 74 4 0 20 2 0 13 0 19 140 2 0 27 1 0 92 1 0 41 chain 52604 chr8 146364022 + 91784809 91785409 L1PA5 6144 + 5543 6144 57237 137 0 1 463 chain 26824 chr8 146364022 + 91787016 91787370 THE1B 368 - 0 368 96900 196 8 7 98 8 23 44 chain 79018 chr8 146364022 + 91789227 91790302 MER11A 1151 - 0 1151 44052 167 0 1 10 0 1 51 0 1 58 8 15 11 25 1 145 6 7 139 7 8 92 0 1 149 4 0 116 8 0 24 10 109 45 chain 24941 chr8 146364022 + 91791010 91791472 L1PA17 2846 - 153 613 105105 44 1 0 17 1 0 14 6 4 10 31 28 43 1 0 15 64 57 7 0 12 5 0 1 203 chain 7345 chr8 146364022 + 91795396 91795495 MLT1B 390 + 276 374 175125 22 1 0 76 chain 111180 chr8 146364022 + 91859185 91860718 THE1B-int 1605 - 6 1604 33888 41 1 0 4 5 4 4 0 1 47 4 5 177 0 1 15 3 0 127 5 6 23 0 4 105 1 0 327 12 13 13 1 0 7 5 6 200 8 72 32 0 1 165 0 1 52 5 0 128 5 6 11 chain 6712 chr8 146364022 + 91869335 91869416 MER50B 698 - 130 210 179602 32 1 0 48 chain 30114 chr8 146364022 + 91887427 91887743 AluYb8 318 + 0 316 84435 316 chain 19697 chr8 146364022 + 91893626 91894001 MSTA 426 + 3 408 128111 14 0 1 79 37 57 38 9 6 5 1 0 8 2 8 19 14 13 42 6 0 9 2 16 90 chain 27138 chr8 146364022 + 91908878 91909302 LTR10F 562 + 37 513 95798 79 0 28 53 28 0 32 0 24 13 5 11 158 11 31 5 2 0 25 0 4 13 chain 44438 chr8 146364022 + 91927793 91928356 MLT2A2 560 - 0 560 63650 55 0 1 32 5 0 22 0 1 245 0 1 45 7 6 152 chain 49169 chr8 146364022 + 91945158 91945952 L1PB1 5432 + 4667 5427 59618 36 0 1 300 0 1 68 4 0 6 0 4 15 18 16 24 1 0 9 1 0 9 7 3 9 2 0 48 10 9 11 1 0 41 7 6 13 25 12 19 7 4 15 2 0 24 1 0 21 10 9 4 1 0 18 2 0 5 chain 36045 chr8 146364022 + 91978325 91978726 L1PA3long 6157 + 5741 6142 74839 401 chain 50907 chr8 146364022 + 92027784 92028374 LTR10C 591 - 0 591 58363 345 0 1 245 chain 4791 chr8 146364022 + 92036102 92036183 MADE1 96 - 0 96 197451 33 15 30 33 chain 21032 chr8 146364022 + 92041952 92042219 AluY 311 + 36 307 123800 69 8 11 13 1 2 176 chain 4808 chr8 146364022 + 92067510 92067562 L1PA4 6152 - 194 246 197254 52 chain 42606 chr8 146364022 + 92103604 92104133 MLT2A2 560 + 15 560 65892 263 13 18 106 0 11 147 chain 29569 chr8 146364022 + 92152870 92153180 AluYa5 310 - 0 310 86330 310 chain 306745 chr8 146364022 + 92160324 92163739 L1PA4 6152 - 13 3428 13140 1146 1 0 669 0 1 1599 chain 98655 chr8 146364022 + 92163739 92165046 L1PA8A 6298 - 324 1647 37094 140 1 0 261 2 0 43 7 9 21 0 7 138 7 12 154 0 4 123 0 1 52 2 0 3 3 0 7 0 5 343 chain 177187 chr8 146364022 + 92165056 92167425 L1PA8A 6298 + 2276 4652 21234 226 3 4 18 13 14 34 1 5 26 0 5 150 0 4 184 1 0 174 1 0 4 0 1 68 0 1 166 8 6 102 16 17 216 7 0 63 7 0 95 1 3 7 2 0 6 0 5 223 8 10 255 6 7 134 1 0 143 chain 69977 chr8 146364022 + 92181751 92182539 L1PA2 6032 - 3 790 48202 141 0 6 8 4 1 7 5 0 617 0 1 6 chain 71779 chr8 146364022 + 92182539 92183316 L1PA2 6032 + 4426 5205 47572 215 0 1 33 0 1 529 chain 541105 chr8 146364022 + 92204080 92210096 L1PA3long 6157 - 5 6157 2651 1117 1 0 1137 0 2 626 0 4 2101 8 11 250 8 136 285 1 0 330 0 1 152 chain 3377 chr8 146364022 + 92214608 92214659 MLT1B 390 - 339 389 217539 27 5 4 19 chain 376379 chr8 146364022 + 92232630 92237755 L1PA8A 6298 - 7 6264 10869 284 2 1 275 18 0 97 0 2 142 2 1 75 0 1 4 2 1 52 4 0 53 13 14 88 0 1 118 0 1 262 5 4 337 0 2 20 7 10 244 0 11 62 0 1 100 1 2 126 0 16 5 0 1 61 1 5 59 0 2 53 6 5 211 1 2 38 0 3 326 0 1154 20 1 0 45 1 6 56 1 2 202 1 0 133 2 1 120 7 6 147 3 7 65 2 0 53 0 1 167 15 13 235 5 7 83 0 3 127 1 0 25 20 17 9 3 1 73 6 0 15 13 12 42 1 0 9 4 0 13 28 24 12 1 0 4 2 0 15 2 0 12 1 0 7 2 1 11 2 1 9 1 0 9 23 16 8 2 0 14 8 5 17 31 21 18 1 0 6 chain 24403 chr8 146364022 + 92272303 92272671 THE1D 372 - 0 372 108064 133 5 11 35 21 28 108 14 5 52 chain 8517 chr8 146364022 + 92290890 92291331 L1MA8 2339 - 8 401 168207 27 39 25 11 1 2 9 1 0 20 2 0 39 191 157 23 37 39 41 chain 86592 chr8 146364022 + 92319095 92320032 L1PA3long 6157 + 5215 6152 40934 937 chain 8618 chr8 146364022 + 92329684 92329808 MER85 139 + 4 139 167643 92 12 23 20 chain 35533 chr8 146364022 + 92353216 92353614 L1PA2 6032 - 0 400 75498 15 3 5 380 chain 94295 chr8 146364022 + 92367957 92369013 L1PA4 6152 - 1 1056 38262 252 2 1 802 chain 105140 chr8 146364022 + 92369746 92371320 L1PA5 6144 + 4891 6143 35464 56 1 2 254 2 1 90 0 1 383 325 0 67 0 4 217 0 1 171 3 0 5 chain 12872 chr8 146364022 + 92377440 92377619 MER30 238 - 0 197 148743 95 18 36 66 chain 6467 chr8 146364022 + 92441095 92441356 MLT1B 390 + 73 337 181497 32 2 0 6 160 165 61 chain 77875 chr8 146364022 + 92464438 92465379 L1PA7 6471 - 3 945 44577 9 2 0 787 0 3 143 chain 14213 chr8 146364022 + 92476528 92476892 L1PB1 5432 - 5 329 143835 4 1 0 5 1 0 14 2 1 12 11 10 11 8 7 17 2 0 11 11 8 30 23 7 9 1 0 44 1 0 16 2 1 53 2 0 8 17 12 9 1 0 22 3 0 13 chain 23058 chr8 146364022 + 92496969 92497266 AluSc8 310 + 3 299 115368 122 5 8 156 4 0 10 chain 447697 chr8 146364022 + 92505989 92512216 L1PA8 5853 - 6 5640 8823 34 0 4 49 1 0 16 1 0 45 22 21 70 2 0 46 1 0 46 0 1 324 312 0 37 310 0 144 2 0 181 3 10 86 4 3 460 0 1 163 0 1 326 5 19 93 0 1 68 17 19 184 0 2 174 20 10 606 0 1 470 0 1 11 1 2 268 0 7 155 0 1 181 0 1 368 2 0 780 0 1 47 10 14 82 chain 7121 chr8 146364022 + 92514698 92514785 MER41-int 2638 - 1083 1173 176617 55 0 3 32 chain 114077 chr8 146364022 + 92532388 92533604 L1HS 6032 - 521 1737 33082 1216 chain 48195 chr8 146364022 + 92533605 92534123 L1HS 6032 + 5513 6031 60321 518 chain 564875 chr8 146364022 + 92534319 92540349 L1HS 6032 - 0 6030 212 3470 1 0 2489 0 1 70 chain 77628 chr8 146364022 + 92549588 92550542 L1PA8A 6298 + 5327 6291 44680 142 0 4 16 0 7 74 4 5 431 7 6 254 1 0 25 chain 557559 chr8 146364022 + 92570896 92576915 L1PA2 6032 + 12 6032 548 5886 0 1 133 chain 111781 chr8 146364022 + 92581089 92582806 L1P2 5180 - 1894 3305 33673 52 0 4 207 1 0 25 0 1 68 4 4 135 0 4 230 0 1 178 0 1 57 1 0 330 315 0 114 chain 229248 chr8 146364022 + 92582806 92585632 L1PA7 6471 + 3607 6465 17344 229 1 0 13 1 2 195 1 2 4 1 0 821 0 1 69 0 3 32 2 1 5 0 1 214 0 1 42 1 16 215 0 5 144 7 9 580 8 15 233 2 0 6 chain 458408 chr8 146364022 + 92592876 92598259 L1PA6 6164 - 2 5418 8458 752 0 3 81 8 11 200 1 2 21 5 6 154 0 1 564 4 8 1169 0 1 392 3 0 471 0 1 420 1 0 83 1 2 363 0 1 8 1 0 502 0 3 139 0 17 20 0 1 20 chain 32463 chr8 146364022 + 92614523 92614955 MER57A1 433 + 0 433 80090 258 40 41 134 chain 153598 chr8 146364022 + 92661312 92663157 L1PA7 6471 + 4610 6465 24145 53 0 8 316 0 1 633 0 3 169 0 1 137 3 2 306 0 1 219 3 0 6 chain 2764 chr8 146364022 + 92672163 92672216 Charlie16a 284 + 132 181 229286 13 3 0 16 5 4 16 chain 29087 chr8 146364022 + 92701223 92701934 L1PB1 5432 + 4922 5430 88605 178 235 58 10 2 0 44 0 2 6 3 1 16 1 0 43 1 0 16 4 1 14 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 143026 chr8 146364022 + 92704883 92706914 L1PA8 5853 - 0 1877 25647 32 5 6 51 6 5 18 2 1 51 5 4 6 1 0 17 1 0 54 3 1 43 155 0 470 0 1 92 0 2 246 1 2 322 10 12 53 1 0 22 0 2 6 7 3 268 0 4 83 chain 13490 chr8 146364022 + 92705179 92705332 L1PA8 5853 - 289 442 146387 153 chain 29799 chr8 146364022 + 92712203 92712514 AluYb8 318 - 7 318 85435 311 chain 87288 chr8 146364022 + 92712514 92713859 L1MA1 4479 - 3017 4347 40650 304 0 2 35 0 1 97 0 4 187 1 0 5 30 20 17 0 5 6 28 36 305 0 1 49 5 6 29 6 1 71 6 4 41 91 73 15 1 0 16 chain 6509 chr8 146364022 + 92725096 92725203 L1PB1 5432 - 6 105 181168 4 1 0 15 1 0 3 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 chain 252392 chr8 146364022 + 92739937 92749273 L1PA3long 6157 + 3237 6157 16107 1117 0 4 981 6420 0 818 chain 89919 chr8 146364022 + 92747430 92748430 L1PA3long 6157 + 4309 5310 39679 851 0 1 149 chain 6158 chr8 146364022 + 92767813 92767918 MER121 330 + 31 130 183917 38 1 0 10 13 8 43 chain 24417 chr8 146364022 + 92785323 92785641 AluYc3 301 + 0 294 107989 112 20 0 138 2 0 22 2 0 22 chain 85721 chr8 146364022 + 92788383 92789338 L1PA4 6152 - 1 958 41192 147 0 1 732 0 1 76 chain 97114 chr8 146364022 + 92789338 92790428 L1P1 4361 + 2846 3933 37538 1082 3 0 5 chain 6920 chr8 146364022 + 92798593 92798679 L1PA16 3655 - 85 172 178040 82 0 1 4 chain 358572 chr8 146364022 + 92800037 92804353 L1P1 4361 + 5 4341 11389 1041 8 9 286 0 10 234 0 8 36 6 7 1540 1 2 931 0 2 39 1 0 155 1 0 23 2 1 12 chain 537790 chr8 146364022 + 92805781 92811796 L1PA3long 6157 + 0 6155 3185 152 0 1 623 0 128 692 0 1 256 0 5 2496 0 4 967 7 8 822 chain 124313 chr8 146364022 + 92828410 92829959 LTR12C 1709 + 0 1709 29593 145 0 1 177 13 56 85 6 5 181 0 119 68 1 0 275 13 10 102 0 4 330 1 0 63 5 4 84 chain 426631 chr8 146364022 + 92831296 92836854 L1PA8 5853 + 50 5843 9383 21 2 0 11 1 0 13 26 13 41 0 1 152 18 6 301 1 0 126 1 2 4 0 1 85 21 20 311 0 2 47 1 2 264 13 13 96 0 1 281 0 1 51 0 244 635 0 1 78 9 8 25 2 1 71 0 4 14 7 5 243 4 5 38 5 7 25 26 27 724 0 1 249 15 13 171 4 1 500 1 0 3 2 0 65 0 22 31 1 0 186 0 1 250 1 0 22 1 0 23 2 0 24 0 1 44 2 1 9 1 0 51 3 2 19 1 0 83 chain 21318 chr8 146364022 + 92862275 92862665 L1MA3 4352 + 3962 4323 122811 127 55 32 58 1 0 81 2 0 8 27 25 24 1 0 6 chain 4152 chr8 146364022 + 92862783 92862851 L1M3f 2199 + 2029 2096 205213 31 11 10 26 chain 9600 chr8 146364022 + 92868529 92868644 L1PA7 6471 - 4 119 162595 115 chain 544995 chr8 146364022 + 92881746 92887762 L1PA2 6032 + 6 6031 2075 68 0 1 180 1 0 459 0 1 2453 0 3 895 0 1 162 0 4 1798 chain 5948 chr8 146364022 + 92887828 92887914 MLT1A0 366 + 256 344 185704 21 5 7 60 chain 22835 chr8 146364022 + 92902686 92902970 L1PA7 6471 + 6179 6468 116420 129 1 0 42 0 6 112 chain 537188 chr8 146364022 + 92903590 92909589 L1PA3long 6157 + 0 6156 3288 52 0 11 89 0 1 290 0 1 111 1 8 134 0 7 72 0 128 647 0 1 1624 0 1 2979 chain 4518 chr8 146364022 + 92909932 92909985 MER53 195 + 142 195 200577 53 chain 58276 chr8 146364022 + 92925224 92925977 LTR12 884 - 0 884 53824 228 13 12 105 0 2 137 0 22 40 1 2 159 2 109 68 chain 8639 chr8 146364022 + 92928460 92928569 Tigger3c 601 + 466 575 167549 109 chain 41028 chr8 146364022 + 92944837 92945542 L1PB1 5432 + 4754 5424 67863 20 1 0 60 6 7 121 3 0 140 6 1 14 6 3 18 3 2 6 1 0 10 6 2 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 5 21 10 16 8 5 16 0 6 16 1 0 21 1 0 13 1 0 16 1 0 4 chain 31046 chr8 146364022 + 92957364 92957793 MER1A 529 - 0 433 82442 64 6 8 80 0 1 178 8 9 54 6 6 33 chain 9997 chr8 146364022 + 92960548 92960655 LTR7Y 441 + 334 441 160594 107 chain 245818 chr8 146364022 + 92960655 92963734 HERVH-int 3825 + 0 3120 16462 159 1 7 323 2 0 11 98 31 39 2 1 9 1 0 24 6 56 37 1 0 4 21 0 54 0 1 7 0 2 13 0 3 689 0 35 180 3 31 299 0 10 231 4 3 861 chain 36414 chr8 146364022 + 92964489 92964952 LTR7Y 441 + 0 402 74350 165 62 0 232 0 1 4 chain 28769 chr8 146364022 + 93039063 93039372 AluYg6 310 + 0 309 90025 309 chain 86420 chr8 146364022 + 93095440 93096485 L1PA7 6471 + 5422 6470 40998 199 0 3 61 30 28 599 0 2 156 chain 2947 chr8 146364022 + 93105783 93105814 U2 167 + 0 31 226110 31 chain 111138 chr8 146364022 + 93132721 93134050 L1PA7 6471 + 5136 6470 33900 264 10 11 211 0 2 106 1 0 235 0 1 31 0 1 283 0 1 188 chain 13076 chr8 146364022 + 93142051 93142198 L1PA5 6144 - 12 159 147931 147 chain 31952 chr8 146364022 + 93165734 93166173 MLT2A2 560 + 0 557 80937 180 1 0 114 6 0 4 0 115 44 1 6 39 0 4 10 0 1 40 chain 19360 chr8 146364022 + 93177546 93177797 AluSg7 307 - 0 254 129046 45 4 6 129 0 1 73 chain 8536 chr8 146364022 + 93179688 93179778 5S 121 - 31 121 168097 90 chain 24272 chr8 146364022 + 93191731 93192035 AluY 311 + 5 297 108831 127 0 1 154 13 0 10 chain 24911 chr8 146364022 + 93213732 93214120 THE1B 368 - 5 368 105276 69 1 0 94 0 2 24 3 2 20 48 9 21 3 14 66 0 5 24 2 0 13 chain 32915 chr8 146364022 + 93216057 93216514 MER41A 554 - 86 554 79344 71 0 1 28 0 1 74 1 0 4 12 14 84 4 11 81 5 6 93 chain 12025 chr8 146364022 + 93221396 93221545 MER41A 554 - 0 149 152098 149 chain 22584 chr8 146364022 + 93227144 93228283 L1PA7 6471 - 2 1143 22538 11 0 2 143 5 6 175 0 1 213 0 1 200 4 0 15 0 2 85 1 0 287 chain 513328 chr8 146364022 + 93228312 93234417 L1PA5 6144 - 12 6141 5849 11 0 1 116 9 0 6 0 9 83 0 1 109 1 0 1028 6 12 103 0 1 30 1 0 1112 0 1 2077 0 9 253 13 4 296 0 1 236 0 1 483 0 14 132 chain 21473 chr8 146364022 + 93234424 93235507 L1PA7 6471 - 1143 2234 22538 44 0 1 71 0 1 403 9 10 21 4 7 282 1 0 5 6 7 153 0 2 84 chain 110171 chr8 146364022 + 93242839 93244509 LTR12C 1709 + 0 1709 34167 42 38 42 136 0 14 19 45 45 78 51 54 31 3 0 7 1 3 116 26 24 46 5 0 180 1 0 235 0 47 89 47 20 254 0 9 50 1 0 86 1 0 82 chain 43491 chr8 146364022 + 93248770 93249283 MER9a2 513 + 0 513 64823 513 chain 309524 chr8 146364022 + 93250612 93254427 HERVK9-int 4720 + 36 4714 13022 14 12 8 71 2 0 33 1 0 79 1 2 609 37 3 89 29 2 415 1 0 135 0 924 546 1 0 106 0 2 787 0 2 68 0 2 249 4 6 526 chain 44071 chr8 146364022 + 93254433 93254946 MER9a2 513 + 0 513 64133 513 chain 126961 chr8 146364022 + 93254963 93256537 THE1A-int 1579 - 0 1579 28825 9 0 1 458 0 2 420 8 6 30 0 3 136 2 1 71 0 2 440 chain 29032 chr8 146364022 + 93264636 93264962 L1PA5 6144 - 968 1293 87128 154 1 0 171 chain 84252 chr8 146364022 + 93264962 93265936 L1PA5 6144 + 5166 6144 41798 767 0 1 58 1 4 148 chain 108790 chr8 146364022 + 93303635 93305313 L1PA11 4918 - 410 2006 34488 20 1 0 13 3 1 49 37 36 57 4 0 127 167 104 128 1 0 81 8 7 87 8 0 138 1 0 748 chain 481339 chr8 146364022 + 93320591 93326528 L1PA6 6164 - 2 6164 7676 6 6 0 145 9 8 476 0 1 172 0 4 21 7 11 1332 4 5 762 3 5 49 0 174 212 0 1 450 11 5 233 5 6 134 0 2 84 0 5 246 0 35 754 0 17 273 7 2 22 11 10 35 2 0 54 2 1 410 chain 32608 chr8 146364022 + 93342055 93342534 L1PA11 4918 - 388 851 79840 10 6 1 11 4 0 9 1 3 8 1 0 16 2 0 65 2 0 13 2 1 61 5 1 14 0 1 249 chain 116183 chr8 146364022 + 93349393 93351480 L1PB2 3958 + 2113 3836 32382 166 24 26 177 3 0 10 11 5 39 0 1 209 1 0 178 1 0 26 0 1 342 0 3 13 15 13 39 1 0 15 4 0 39 0 2 5 2 0 13 5 3 14 4 0 7 354 9 12 7 8 53 15 16 60 1 0 59 4 3 55 1 2 5 1 0 11 2 0 22 12 12 50 chain 224976 chr8 146364022 + 93365443 93368401 L1PA8 5853 - 0 2971 17597 93 1 0 19 2 1 33 35 29 35 0 1 34 2 0 44 1 0 553 0 2 633 6 7 211 0 3 78 6 3 18 27 41 531 0 1 88 0 1 8 12 11 250 0 1 186 0 4 52 chain 548976 chr8 146364022 + 93376420 93382436 L1PA2 6032 - 2 6032 1580 254 1 0 1013 0 1 134 1 0 398 0 4 1182 0 1 2326 0 7 227 0 3 480 chain 20995 chr8 146364022 + 93387114 93387382 AluY 311 + 39 291 123933 83 1 0 4 0 1 119 16 0 45 chain 483020 chr8 146364022 + 93393692 93399056 L1PA3long 6157 - 42 6153 7623 211 1 0 603 0 1 398 0 1 145 1 0 1525 0 745 23 0 1 342 0 1 2115 chain 17924 chr8 146364022 + 93404653 93404886 L1P3 4156 - 17 247 133049 26 1 0 6 2 0 198 chain 4135 chr8 146364022 + 93405777 93405823 LTR12D 1347 - 595 641 205435 46 chain 398539 chr8 146364022 + 93407818 93412623 HERV9-int 5642 - 904 5631 10153 464 0 1 2686 1 0 9 0 1 329 1 0 64 1 2 21 0 4 50 84 0 310 2 1 197 0 1 457 0 1 129 chain 84228 chr8 146364022 + 93412707 93413911 LTR12D 1347 - 0 1347 41806 265 2 1 32 1 0 22 11 7 128 0 1 48 12 14 9 0 1 113 21 14 8 0 150 198 45 38 28 0 4 13 8 13 240 chain 38680 chr8 146364022 + 93428720 93429265 MLT2A2 560 + 0 557 71175 180 1 0 61 0 1 150 39 51 114 chain 6597 chr8 146364022 + 93441123 93441205 LTR12C 1709 - 973 1055 180479 82 chain 15480 chr8 146364022 + 93460888 93461107 MER30 238 - 0 238 139963 45 3 0 40 0 2 20 13 33 98 chain 14642 chr8 146364022 + 93476364 93476646 L1PB1 5432 + 5144 5400 142449 12 2 0 3 2 0 9 12 10 42 2 1 15 1 0 44 1 0 12 16 5 27 2 0 8 1 0 14 2 0 47 1 0 7 chain 58714 chr8 146364022 + 93496395 93497043 L1PA3long 6157 - 5 653 53575 648 chain 29740 chr8 146364022 + 93540517 93540873 L1PA7 6471 + 6111 6469 85690 20 0 1 130 0 1 206 chain 496003 chr8 146364022 + 93569261 93575196 L1PA6 6164 - 205 6163 7070 637 0 4 172 2 3 499 0 1 207 0 1 257 10 1 280 0 6 196 0 1 504 0 1 859 1 2 11 1 0 38 0 2 9 16 21 31 1 5 526 3 0 431 1 0 106 0 1 461 1 0 128 1 0 4 0 1 88 6 5 185 0 1 33 0 9 33 4 5 193 chain 49681 chr8 146364022 + 93590373 93590915 L1PA2 6032 - 1 542 59247 149 1 0 392 chain 11254 chr8 146364022 + 93646974 93647177 MamRep137 426 + 69 268 155213 25 21 16 25 21 22 111 chain 127548 chr8 146364022 + 93674186 93676046 L1PA5 6144 + 4285 6144 28683 20 164 185 6 4 0 56 161 136 167 0 3 433 0 4 849 chain 56134 chr8 146364022 + 93678474 93679176 L1PA7 6471 - 9 713 55045 146 8 9 22 1 0 423 1 3 101 chain 13928 chr8 146364022 + 93679176 93679336 L1P3 4156 - 3996 4156 144827 160 chain 25823 chr8 146364022 + 93714335 93714638 AluSq10 312 + 0 303 100777 303 chain 139017 chr8 146364022 + 93716137 93717664 L1PA4 6152 + 4625 6151 26299 124 1 0 1402 chain 23530 chr8 146364022 + 93722776 93723060 AluSc5 308 + 20 304 112965 284 chain 5434 chr8 146364022 + 93764217 93764288 MADE1 96 - 0 93 190665 27 0 22 44 chain 399598 chr8 146364022 + 93773796 93782105 HERVL-int 5654 - 29 5081 10109 190 1 2 52 3305 0 506 0 1 81 0 1 4 1 0 822 0 2 425 2 63 177 0 2 113 4 5 50 4 0 287 0 1 481 1 2 148 0 1 156 1 0 259 1 2 664 14 0 91 11 12 78 14 9 44 1 0 321 chain 90379 chr8 146364022 + 93774498 93775600 L1PA7 6471 - 5 1109 39481 348 0 1 251 3 4 241 1 0 205 0 1 53 chain 141898 chr8 146364022 + 93775600 93777344 L1PA7 6471 + 3626 5367 25841 210 1 0 502 0 1 7 5 6 209 0 1 385 8 0 43 9 10 237 0 2 128 chain 30047 chr8 146364022 + 93782212 93782614 MLT2A1 477 - 86 477 84655 6 4 0 38 6 0 143 0 1 21 0 1 11 4 1 169 chain 14966 chr8 146364022 + 93783364 93783530 L1PA4 6152 - 128 294 141426 166 chain 7920 chr8 146364022 + 93783530 93783662 L1PA4 6152 + 6020 6140 171523 62 34 22 36 chain 15893 chr8 146364022 + 93801265 93801522 THE1C 375 + 114 360 138679 69 1 2 5 1 0 52 9 7 9 1 0 44 7 0 47 1 0 11 chain 20543 chr8 146364022 + 93801682 93801959 AluY 311 + 9 294 125491 44 8 16 63 0 1 144 2 1 16 chain 49069 chr8 146364022 + 93841122 93841724 PABL_A 660 + 6 653 59697 149 0 2 92 1 45 128 6 5 226 chain 36983 chr8 146364022 + 93858957 93859446 L1PA5 6144 - 0 456 73530 35 63 30 391 chain 13240 chr8 146364022 + 93881499 93881679 AluY 311 + 112 300 147320 20 0 1 45 0 3 44 11 15 60 chain 73388 chr8 146364022 + 93925484 93926357 L1PA7 6471 + 5591 6470 46842 30 0 6 843 chain 3634 chr8 146364022 + 93942241 93942282 L1PA6 6164 + 6119 6160 213067 41 chain 51214 chr8 146364022 + 93983458 93984104 L1PA10 4194 + 3520 4161 58180 114 0 1 327 2 0 154 3 0 34 1 0 11 chain 81129 chr8 146364022 + 94002683 94003711 L1P3 4156 + 0 1027 43121 247 1 0 19 7 6 47 2 1 8 2 5 76 1 0 618 chain 12456 chr8 146364022 + 94015169 94015344 L1MA6 2487 + 157 335 150435 79 0 1 73 11 13 12 chain 5499 chr8 146364022 + 94015659 94015761 MSTA 426 - 329 426 190045 22 22 16 37 0 1 21 chain 31840 chr8 146364022 + 94019273 94019974 L1PA10 4194 + 175 799 81104 15 2 0 11 4 1 5 2 0 8 13 9 8 2 0 8 5 6 4 1 0 21 8 6 9 1 0 8 115 65 4 1 0 9 0 3 7 8 0 12 7 0 9 1 0 79 10 8 34 0 3 64 0 1 131 5 6 70 chain 10972 chr8 146364022 + 94021861 94022119 L1MA6 2487 + 2037 2276 156307 23 44 42 95 3 2 26 40 24 27 chain 143254 chr8 146364022 + 94050857 94052453 SVA_D 2077 + 52 2077 25605 508 0 40 317 0 391 80 0 1 49 3 0 639 chain 277104 chr8 146364022 + 94057225 94061236 L1PA10 4194 - 70 4015 14805 8 3 0 201 1 5 84 5 1 158 0 1 225 0 3 354 0 1 4 1 0 263 5 6 106 7 8 66 0 1 122 30 13 20 3 15 46 6 7 466 0 21 174 5 6 54 0 1 347 0 1 174 2 0 6 0 2 59 14 15 545 55 23 5 1 0 18 2 0 5 1 2 79 1 0 8 7 0 13 1 0 12 116 84 15 2 0 20 1 0 10 1 0 9 2 0 9 22 16 8 3 0 13 1 0 7 chain 503946 chr8 146364022 + 94064526 94071148 L1PA7 6471 - 12 6468 6607 399 1 0 436 1 4 385 2 5 133 0 1 215 0 1 247 0 2 425 1 2 48 7 14 143 0 1 346 1 9 31 0 1 108 230 19 113 3 1 6 0 7 712 50 19 325 0 1 22 0 1 697 0 1 360 0 4 224 4 5 226 11 46 310 1 2 139 26 26 234 chain 7478 chr8 146364022 + 94092431 94092514 L1PA6 6164 + 6078 6161 174284 83 chain 18769 chr8 146364022 + 94101860 94102117 AluY 311 + 38 296 130775 94 0 1 77 8 9 57 6 5 15 chain 8965 chr8 146364022 + 94159450 94159580 L1P4 1494 + 92 220 165792 25 7 6 22 1 0 75 chain 4019 chr8 146364022 + 94198309 94198359 MER58A 224 + 149 199 207095 50 chain 518166 chr8 146364022 + 94211924 94218089 L1PA6 6164 - 3 6164 5362 139 8 0 9 5 13 426 8 0 886 3 4 41 1 0 253 0 1 281 0 2 916 0 1 461 0 1 51 6 1 350 1 0 307 0 1 111 0 1 93 0 2 1492 34 35 283 chain 20260 chr8 146364022 + 94219705 94220074 L1PA14 3548 + 3118 3465 126346 13 2 0 5 4 3 82 1 0 24 6 0 87 4 3 11 4 0 33 4 2 10 26 27 37 6 0 10 chain 10205 chr8 146364022 + 94235249 94235374 MER41B 635 + 510 635 159604 125 chain 4477 chr8 146364022 + 94255414 94255469 L1MB8 1703 + 1310 1365 201041 55 chain 29301 chr8 146364022 + 94289952 94290261 AluYg6 310 - 1 310 87567 309 chain 7408 chr8 146364022 + 94331650 94331779 MER30 238 - 0 148 174723 45 5 8 50 13 29 16 chain 18488 chr8 146364022 + 94351931 94352245 THE1D 372 - 46 372 131539 88 43 58 48 0 4 81 18 9 23 0 2 13 chain 18499 chr8 146364022 + 94358119 94358332 LTR12F 595 + 382 595 131499 213 chain 26675 chr8 146364022 + 94369430 94369736 AluYk4 311 - 4 311 97410 202 0 1 104 chain 3135 chr8 146364022 + 94384817 94384852 Charlie20a 515 - 95 130 222280 35 chain 119531 chr8 146364022 + 94393236 94394786 THE1A-int 1579 - 5 1579 31206 41 10 0 140 0 1 17 0 1 54 0 1 21 6 5 10 9 8 33 0 13 520 22 40 573 1 2 69 0 1 24 chain 558432 chr8 146364022 + 94418040 94424066 L1PA2 6032 + 1 6032 461 608 0 1 2073 0 4 3345 chain 18465 chr8 146364022 + 94435312 94435535 L1PA7 6471 - 10 268 131596 27 1 37 86 1 0 108 chain 29724 chr8 146364022 + 94468696 94469102 MER1A 529 - 0 384 85744 73 6 0 4 16 0 307 chain 97962 chr8 146364022 + 94474314 94475464 L1PA7 6471 + 5128 6281 37289 221 1 0 272 0 3 182 0 1 474 chain 422993 chr8 146364022 + 94478553 94483699 L1P2 5180 + 4 5178 9458 130 14 0 16 2 1 96 6 5 160 21 13 83 1 0 7 1 0 272 1 0 5 1 0 141 0 25 131 15 16 179 3 0 1033 3 2 845 1 3 4 1 0 1473 0 5 190 0 28 23 0 1 52 0 2 145 1 0 46 1 0 38 1 0 4 chain 13151 chr8 146364022 + 94483941 94484090 L1PA4 6152 + 5994 6143 147640 149 chain 28845 chr8 146364022 + 94488321 94488710 MLT2A1 477 + 0 390 89688 165 8 5 11 6 7 16 0 1 178 0 2 5 chain 82941 chr8 146364022 + 94491974 94492925 L1PA5 6144 + 5194 6144 42363 100 1 0 89 1 0 153 0 1 607 chain 374932 chr8 146364022 + 94495493 94500000 L1P2 5180 + 2 4540 10923 147 1 0 98 1 0 222 1 2 36 1 0 8 1 0 272 1 0 6 1 0 137 1 26 191 0 9 423 0 1 739 0 1 832 0 1 30 1 0 502 0 1 74 1 0 780 chain 140910 chr8 146364022 + 94500000 94501605 L1PA5 6144 + 4527 6134 26006 694 9 10 305 0 1 597 chain 21118 chr8 146364022 + 94523710 94523958 L1PA11 4918 - 818 1066 123498 248 chain 28739 chr8 146364022 + 94523976 94524397 L1PA11 4918 + 4093 4475 90175 115 32 1 41 1 0 4 0 1 73 5 0 65 2 1 13 2 0 68 chain 26749 chr8 146364022 + 94531938 94532263 L1PA7 6471 - 746 1074 97167 101 0 3 224 chain 62005 chr8 146364022 + 94532269 94532996 L1PA7 6471 + 5742 6465 51897 485 1 0 232 3 0 6 chain 96080 chr8 146364022 + 94538885 94540538 L1PB2 3958 - 120 1446 37797 63 1 0 26 2 0 64 5 4 29 326 6 29 1 0 72 1 0 94 4 0 12 2 0 65 9 15 52 3 1 14 0 1 269 0 1 96 2 1 184 0 1 142 4 3 82 chain 132568 chr8 146364022 + 94559524 94561328 L1PA11 4918 + 2774 4578 27508 143 2 1 743 4 0 190 8 39 191 7 6 168 1 5 30 1 0 41 4 5 52 7 6 12 3 0 68 2 0 14 1 0 10 0 1 9 4 0 9 3 0 5 31 17 28 2 0 11 chain 27723 chr8 146364022 + 94570731 94571029 AluYb9 318 - 13 311 93959 298 chain 12839 chr8 146364022 + 94604965 94605156 MER30 238 - 0 198 148888 40 3 0 65 6 0 6 10 26 61 chain 45290 chr8 146364022 + 94623220 94623761 L1PA7 6471 + 5930 6470 62729 113 2 4 180 1 0 88 2 0 155 chain 4970 chr8 146364022 + 94626401 94626459 MER58A 224 + 166 224 195481 58 chain 47844 chr8 146364022 + 94649490 94650051 L1PA7 6471 + 5865 6437 60596 63 0 1 203 1 0 54 0 4 159 0 7 81 chain 198903 chr8 146364022 + 94679832 94682002 L1PA3long 6157 + 3986 6157 19288 2021 0 1 149 chain 11902 chr8 146364022 + 94682943 94683284 MSTA 426 + 0 375 152589 27 4 31 9 0 1 55 29 33 7 4 0 21 1 0 14 87 86 16 0 5 6 11 14 50 chain 17385 chr8 146364022 + 94691255 94691592 L1PA15 4387 - 31 350 134555 24 0 3 3 8 0 13 11 9 34 17 14 39 2 1 5 4 0 26 1 0 55 6 5 20 6 5 63 chain 42756 chr8 146364022 + 94707340 94708041 L1PB1 5432 - 20 688 65715 8 1 0 9 0 3 22 1 0 24 2 0 14 9 6 13 11 0 7 7 6 4 1 0 15 1 0 41 5 8 10 3 2 52 2 0 9 7 3 12 3 2 7 1 0 12 21 12 367 chain 5012 chr8 146364022 + 94716577 94716633 MER1B 344 - 0 56 194996 56 chain 5198 chr8 146364022 + 94754478 94754543 MIR 256 + 104 169 193037 65 chain 516585 chr8 146364022 + 94786594 94792731 L1PA6 6164 - 2 6164 5525 211 0 3 150 1 0 244 1 4 234 0 4 63 1 2 5 1 0 8 0 1 930 0 2 726 1 2 383 0 1 119 3 2 737 1 2 176 1 0 337 0 1 491 2 1 4 0 1 339 17 0 72 0 4 78 0 17 121 1 2 220 6 5 79 0 4 53 24 27 297 chain 28337 chr8 146364022 + 94795829 94796202 THE1C 375 - 0 375 91810 26 1 0 100 5 6 38 0 1 14 1 0 8 0 1 23 0 1 157 chain 24658 chr8 146364022 + 94838351 94838631 AluYk4 311 - 2 286 106684 38 0 4 242 chain 147447 chr8 146364022 + 94844932 94847481 SVA_A 1864 - 6 1849 24972 651 3 0 36 2 0 26 1 0 10 7 5 31 39 0 112 2 0 100 1 0 9 34 0 38 2 0 77 0 2 53 39 0 75 1 4 50 0 2 27 34 0 13 44 8 20 492 0 404 7 13 44 42 10 23 chain 2464 chr8 146364022 + 94845699 94845738 SVA_A 1864 - 802 839 71201 1 2 0 36 chain 2635 chr8 146364022 + 94846405 94846438 SVA_A 1864 - 1214 1247 208665 33 chain 12771 chr8 146364022 + 94846485 94846812 SVA_A 1864 - 1108 1281 66691 71 154 0 102 chain 2713 chr8 146364022 + 94846674 94846707 SVA_A 1864 - 812 845 230047 33 chain 3355 chr8 146364022 + 94846864 94846961 SVA_A 1864 - 922 1018 75377 57 1 0 39 chain 31003 chr8 146364022 + 94847820 94848302 LTR64 526 + 0 503 82504 84 6 7 49 1 0 52 0 1 185 54 74 51 chain 24682 chr8 146364022 + 94850546 94850936 MSTA 426 - 1 426 106538 106 0 26 26 56 66 17 2 0 81 0 1 102 chain 22393 chr8 146364022 + 94863270 94863593 L1MA8 2339 + 557 873 118520 21 8 5 202 1 0 6 2 1 12 2 0 69 chain 40403 chr8 146364022 + 94886904 94887381 MER9a1 513 - 0 513 68730 327 1 13 21 0 1 104 0 23 24 chain 4828 chr8 146364022 + 94887913 94888046 MER1B 344 + 93 223 197039 57 61 58 15 chain 3601 chr8 146364022 + 94909238 94909283 MLT1H2 457 + 89 134 213635 45 chain 84794 chr8 146364022 + 94920079 94921128 MER11B 1079 - 31 1079 41597 17 0 1 153 0 1 107 1 3 25 10 0 23 0 1 131 4 5 331 0 3 247 chain 461690 chr8 146364022 + 94958829 94965332 L1PA8 5853 - 0 5803 8345 90 4 3 7 0 17 41 8 7 9 1 0 64 8 6 47 2 1 218 38 0 460 1 2 456 25 5 79 0 1 70 306 0 239 0 1 934 0 1 213 32 13 300 0 1 83 0 4 396 1 2 65 1 0 850 2 5 65 0 1 371 318 1 58 0 1 88 0 10 240 23 27 72 0 1 69 0 1 50 65 26 10 2 0 22 chain 515492 chr8 146364022 + 94976060 94982193 L1PA6 6164 - 2 6164 5620 8 2 0 139 1 0 516 14 18 165 0 1 421 0 1 84 5 3 302 0 12 589 0 1 7 5 4 175 10 4 15 5 0 506 2 1 622 4 5 171 1 2 56 0 1 88 2 5 550 0 20 481 0 3 5 4 1 613 1 0 48 0 2 102 1 0 4 0 1 4 5 6 67 0 4 6 5 1 322 chain 97951 chr8 146364022 + 94982484 94983660 SVA_B 1603 - 216 1603 37293 396 0 41 30 4 0 62 0 40 147 0 116 359 1 0 126 20 31 12 0 8 19 chain 41994 chr8 146364022 + 95007352 95007810 L1PA4 6152 - 0 458 66633 458 chain 35704 chr8 146364022 + 95011278 95011802 LTR12F 595 + 0 595 75266 91 5 18 7 1 0 25 8 7 29 6 14 15 18 9 71 0 64 148 3 0 97 chain 538751 chr8 146364022 + 95015868 95021994 L1PA4 6152 - 13 6149 3032 47 5 0 516 0 1 90 0 4 180 1 0 1498 0 1 638 0 4 332 3 5 510 1 0 471 4 7 804 0 1 682 5 6 339 chain 3211 chr8 146364022 + 95029683 95029717 MIRb 242 - 1 35 220716 34 chain 2918 chr8 146364022 + 95039830 95039876 MADE1 96 - 1 48 226722 13 3 4 30 chain 7445 chr8 146364022 + 95059044 95059236 L1MC1 2226 - 123 298 174473 20 13 7 12 4 0 11 13 10 31 3 4 13 2 0 8 13 10 49 chain 74280 chr8 146364022 + 95062277 95063112 L1PA4 6152 - 0 844 46369 139 0 7 16 9 11 671 chain 2751 chr8 146364022 + 95078190 95078237 L1MB2 1706 - 62 108 229470 29 7 6 11 chain 991 chr8 146364022 + 95079553 95079631 L1MB2 1706 - 12 90 167417 78 chain 36592 chr8 146364022 + 95079704 95080109 L1PA2 6032 - 0 405 74105 405 chain 1333 chr8 146364022 + 95080130 95080235 L1MB2 1706 - 108 255 167417 16 25 13 14 8 62 42 chain 329856 chr8 146364022 + 95096527 95100822 L1PA8 5853 - 18 5745 12209 75 1 0 19 8 7 43 1 0 12 1 0 17 5 6 48 2 0 43 2 1 480 0 2 69 5 3 4 0 1 268 8 7 58 0 1 224 0 3 7 5 13 52 0 1372 14 0 2 96 7 0 610 0 4 98 0 1 79 0 4 23 1 2 140 23 25 41 13 19 318 11 11 97 0 1 600 1 2 83 5 4 75 0 6 25 1 3 101 5 48 160 18 6 59 0 1 70 23 23 41 chain 2998 chr8 146364022 + 95102957 95102990 MER39 703 + 159 192 225060 33 chain 25040 chr8 146364022 + 95119501 95119859 THE1B 368 + 0 368 104598 44 0 15 109 1 0 4 9 8 30 1 0 83 1 0 47 1 0 28 chain 436565 chr8 146364022 + 95133554 95139308 L1PA8 5853 - 0 5684 9148 93 1 0 15 2 1 33 0 1 21 1 2 8 2 0 17 5 6 48 2 0 42 3 2 460 6 7 84 6 8 15 1 5 93 49 18 239 0 4 440 0 2 84 0 2 160 0 1 108 2 0 65 0 1 53 1 0 26 7 9 281 1 8 271 1 0 173 0 1 8 0 4 46 5 0 296 5 1 318 129 0 35 0 20 38 1 2 108 0 5 85 4 1 103 0 1 324 0 5 18 0 1 154 74 66 148 0 4 32 4 18 241 0 13 65 0 3 133 0 6 150 1 2 71 2 26 87 25 13 79 1 2 45 chain 7940 chr8 146364022 + 95137189 95137280 L1PA8 5853 - 3485 3576 170413 91 chain 492703 chr8 146364022 + 95143928 95149834 L1PA6 6164 - 35 5997 7236 7 16 0 97 0 1 615 7 12 24 0 3 49 1 5 661 1 4 283 1 7 4 0 1 407 0 3 369 0 1 141 1 0 135 1 0 110 5 6 17 3 0 241 1 0 85 3 5 314 0 2 186 0 2 87 2 5 773 0 4 17 8 19 394 0 18 108 0 4 336 1 0 102 7 11 255 6 7 25 chain 41683 chr8 146364022 + 95216377 95216901 L1PA8 5853 - 0 524 67048 93 1 0 71 2 1 6 1 0 21 0 4 4 0 1 17 0 1 26 2 0 48 1 0 231 chain 10478 chr8 146364022 + 95217175 95217304 MER85 139 - 0 139 158347 40 0 10 89 chain 5047 chr8 146364022 + 95268376 95268453 MER31B 477 + 255 330 194663 59 5 3 13 chain 5776 chr8 146364022 + 95295672 95295759 L1MB8 1703 - 143 234 187381 47 0 1 20 6 9 14 chain 162375 chr8 146364022 + 95305825 95307860 L1PA8 5853 + 3779 5847 23015 144 0 6 405 1 0 137 18 31 336 0 1 168 18 23 524 1 2 8 1 0 44 2 0 71 1 0 9 1 0 14 0 1 5 2 1 35 2 1 15 1 0 57 0 15 15 chain 458256 chr8 146364022 + 95308368 95315334 HERVL-int 5654 - 65 5654 8463 220 0 3 149 0 1 258 1 0 167 0 9 414 0 1 13 0 1 668 2 0 563 0 12 206 0 3 423 1 0 141 2 3 144 1386 0 1250 34 11 19 0 1 211 1 19 32 1 0 299 22 14 181 9 3 80 0 1 69 chain 119678 chr8 146364022 + 95311743 95313125 LTR12C 1709 - 0 1709 31154 82 1 0 340 1 0 59 0 4 65 0 47 131 0 278 703 chain 33805 chr8 146364022 + 95315334 95315778 MLT2A1 477 - 0 477 77933 43 2 0 10 3 39 208 0 2 5 4 1 169 chain 17790 chr8 146364022 + 95322126 95322396 MER50 708 - 14 280 133445 53 0 4 51 1 3 12 7 0 4 2 0 72 13 12 55 chain 26598 chr8 146364022 + 95333788 95334156 THE1D 372 + 0 372 97674 162 0 1 6 26 30 141 1 0 32 chain 57914 chr8 146364022 + 95336529 95337210 L1PA8A 6298 + 5607 6289 54027 582 1 2 98 chain 39032 chr8 146364022 + 95350007 95350439 L1PA3long 6157 + 5722 6153 70687 163 1 0 268 chain 67243 chr8 146364022 + 95353109 95353865 SVA_B 1603 + 864 1603 49549 111 15 0 622 2 0 6 chain 2742 chr8 146364022 + 95354049 95354113 MER34 540 - 0 65 229580 21 22 23 21 chain 5700 chr8 146364022 + 95377418 95377508 MLT2B1 522 - 209 296 188116 42 12 9 36 chain 26772 chr8 146364022 + 95387490 95387855 THE1B 368 + 0 368 97078 40 1 6 126 10 9 111 2 1 75 chain 24009 chr8 146364022 + 95394834 95395213 THE1D 372 + 0 372 110275 46 26 17 103 0 6 6 37 33 161 chain 8189 chr8 146364022 + 95396271 95396364 L1PA6 6164 + 6066 6159 170012 93 chain 43655 chr8 146364022 + 95426401 95426887 L1PA3long 6157 - 1847 2333 64402 486 chain 171605 chr8 146364022 + 95426887 95428754 L1PA3long 6157 + 4288 6157 21867 1246 0 2 621 chain 54021 chr8 146364022 + 95451679 95452459 MER4E 760 - 0 760 56346 27 2 0 86 0 1 119 21 0 12 0 10 61 5 0 80 1 3 91 0 1 46 3 0 58 10 13 56 0 1 71 7 0 24 chain 6367 chr8 146364022 + 95452839 95452939 MER21B 843 - 4 101 182269 8 1 0 22 3 0 14 1 2 51 chain 38368 chr8 146364022 + 95453069 95453542 LTR2B 499 + 9 499 71621 5 1 0 57 1 0 39 1 20 178 0 1 8 1 0 182 chain 8106 chr8 146364022 + 95466434 95466635 L1MB5 1630 + 1412 1612 170456 60 87 87 42 1 0 11 chain 4384 chr8 146364022 + 95515021 95515074 L1PA8 5853 + 5800 5853 202147 53 chain 194937 chr8 146364022 + 95568181 95573125 L1PB1 5432 - 329 3984 19588 87 0 2 201 0 1 107 2172 841 135 3 0 111 0 21 121 0 2 253 5 7 42 1 0 49 1 0 289 3 1 19 98 100 132 0 5 24 0 11 45 1 2 113 0 1 55 2 0 59 0 5 153 1 2 142 5 4 253 2 0 149 0 7 6 7 0 98 chain 42475 chr8 146364022 + 95574081 95574607 MER41A 554 - 0 527 66043 457 0 1 69 chain 22247 chr8 146364022 + 95581865 95582122 AluYf4 310 + 22 289 119133 96 4 0 88 0 1 35 0 13 34 chain 33123 chr8 146364022 + 95591895 95592742 MER4A1 472 + 0 472 79023 173 398 0 57 25 45 95 0 3 99 chain 25394 chr8 146364022 + 95601157 95601909 Tigger3 1187 + 687 1176 102717 15 1 0 40 9 8 46 6 10 91 19 20 47 312 0 15 1 0 74 30 77 46 chain 13148 chr8 146364022 + 95602175 95602323 L1PA3long 6157 + 6008 6156 147653 148 chain 135463 chr8 146364022 + 95602486 95604604 SVA_F 1814 + 335 1814 26930 553 1 0 48 0 1 10 220 16 214 1 0 10 433 0 617 1 0 10 chain 475 chr8 146364022 + 95603099 95603148 SVA_F 1814 + 962 1011 175847 49 chain 2988 chr8 146364022 + 95603188 95603267 SVA_F 1814 + 760 849 204583 6 0 4 5 1 0 13 35 42 19 chain 4575 chr8 146364022 + 95603267 95603316 SVA_F 1814 + 898 947 199933 49 chain 20023 chr8 146364022 + 95603621 95603834 SVA_F 1814 + 962 1177 127072 181 0 1 7 0 1 25 chain 8752 chr8 146364022 + 95603851 95603951 SVA_F 1814 + 1192 1291 166910 82 1 0 17 chain 7148 chr8 146364022 + 95605843 95605931 MSTB1 431 + 343 431 176414 88 chain 4774 chr8 146364022 + 95609180 95609241 L1MD3 1191 + 1087 1148 197651 61 chain 61236 chr8 146364022 + 95619542 95620469 L1PB1 5432 + 4529 5417 52238 97 3 0 77 0 2 141 0 2 231 1 4 19 4 1 14 3 0 17 1 0 13 1 0 9 20 14 51 12 1 15 1 0 23 51 37 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 0 4 9 chain 25314 chr8 146364022 + 95625894 95626196 AluSp 311 + 0 307 103151 50 2 7 250 chain 26450 chr8 146364022 + 95631713 95632071 THE1A 353 + 0 353 98238 101 10 9 223 6 2 18 chain 8389 chr8 146364022 + 95650850 95650972 MER85 139 - 2 135 168911 21 9 20 92 chain 23364 chr8 146364022 + 95692659 95692944 AluSp 311 - 16 301 113845 285 chain 6224 chr8 146364022 + 95725951 95726030 HY3 101 - 8 91 183370 32 0 4 47 chain 24790 chr8 146364022 + 95729939 95730216 AluSp 311 - 34 311 105943 277 chain 4949 chr8 146364022 + 95740435 95740494 MER68 562 - 503 562 195717 59 chain 26232 chr8 146364022 + 95742973 95743272 AluSp 311 - 12 311 99086 299 chain 14228 chr8 146364022 + 95760896 95761077 Charlie3 2679 + 80 257 143801 152 4 0 25 chain 4284 chr8 146364022 + 95761482 95761533 MER1B 344 + 293 344 203427 51 chain 37323 chr8 146364022 + 95771228 95771679 LTR12F 595 - 2 595 73056 81 1 0 269 0 143 100 chain 6782 chr8 146364022 + 95787115 95787200 L1MB2 1706 - 165 250 179086 85 chain 4592 chr8 146364022 + 95787287 95787340 HSMAR2 1300 + 1 54 199726 53 chain 9906 chr8 146364022 + 95812136 95812258 MER85 139 - 0 132 161040 40 0 10 82 chain 3951 chr8 146364022 + 95831575 95831623 MLT1D 503 + 438 486 208120 48 chain 24175 chr8 146364022 + 95924750 95925057 AluY 311 + 8 299 109342 110 17 0 14 0 1 166 chain 5606 chr8 146364022 + 95980390 95980504 MLT1F2 592 - 438 550 189031 40 37 35 37 chain 23097 chr8 146364022 + 95988461 95988752 AluSc5 308 + 10 302 115160 197 4 5 90 chain 17299 chr8 146364022 + 95994477 95994696 Tigger3c 601 + 344 567 134787 40 0 4 179 chain 4239 chr8 146364022 + 96005659 96005707 MLT1H 522 + 122 170 204022 48 chain 5438 chr8 146364022 + 96033954 96034041 MER21C 908 + 557 645 190633 25 7 8 55 chain 3067 chr8 146364022 + 96062713 96062748 MIR 256 + 96 131 223602 35 chain 4127 chr8 146364022 + 96066574 96066650 MER5A 189 + 49 126 205551 20 17 18 39 chain 8401 chr8 146364022 + 96067442 96067542 U6 107 + 1 101 168849 100 chain 30480 chr8 146364022 + 96102861 96103338 MLT2A1 477 + 0 477 83470 20 4 0 44 0 4 46 1 0 6 0 1 21 0 1 20 6 10 92 6 7 52 1 0 59 0 2 10 10 0 10 10 18 19 8 3 32 chain 114790 chr8 146364022 + 96118522 96119866 L1PA7 6471 + 5121 6469 32848 97 0 1 402 2 0 326 0 1 152 0 5 205 1 0 159 chain 28491 chr8 146364022 + 96126077 96126394 L1PA3long 6157 + 5840 6157 91226 317 chain 64463 chr8 146364022 + 96131264 96131969 L1PA4 6152 - 11 715 50813 236 1 0 468 chain 29299 chr8 146364022 + 96134910 96135263 THE1A 353 + 0 353 87574 353 chain 128576 chr8 146364022 + 96135264 96136829 THE1A-int 1579 + 1 1574 28428 85 1 0 85 0 1 268 0 2 444 0 1 115 0 1 4 2 1 147 0 1 193 3 7 218 chain 26016 chr8 146364022 + 96136834 96137184 THE1A 353 + 0 351 99958 48 0 1 45 1 0 15 24 25 217 chain 76854 chr8 146364022 + 96200676 96201521 L1PA4 6152 + 5306 6151 45056 76 0 1 510 1 0 258 chain 28080 chr8 146364022 + 96219611 96219905 AluYk11 308 + 0 294 92713 294 chain 26384 chr8 146364022 + 96253362 96253807 L1MA1 4479 - 289 724 98472 18 6 0 8 16 14 8 1 0 31 9 7 26 1 0 126 3 0 5 1 0 13 5 6 69 1 0 14 2 0 19 1 0 45 0 9 17 chain 45916 chr8 146364022 + 96255447 96256025 L1PA7 6471 + 5878 6461 62116 50 3 16 240 0 4 110 19 18 102 11 0 43 chain 7894 chr8 146364022 + 96281884 96281966 tRNA-Ser-TCY 82 - 0 82 171701 82 chain 103128 chr8 146364022 + 96299630 96300841 L1PA7 6471 - 9 1221 35963 153 4 5 101 0 4 138 1 0 12 0 1 165 1 0 262 3 0 371 chain 24683 chr8 146364022 + 96312065 96312517 MER51E 476 + 0 476 106535 42 7 8 101 1 36 101 49 40 46 40 13 19 0 24 46 chain 21039 chr8 146364022 + 96322388 96322694 AluY 311 + 16 306 123766 78 1 4 25 0 3 7 44 22 151 chain 22212 chr8 146364022 + 96331068 96331332 AluSg7 307 + 42 307 119293 89 0 1 175 chain 24396 chr8 146364022 + 96360758 96361063 AluY 311 + 0 301 108096 53 0 3 72 1 2 141 8 0 30 chain 16197 chr8 146364022 + 96367336 96367673 THE1B 368 + 0 368 137765 108 14 15 33 58 93 5 3 0 52 31 29 33 chain 551520 chr8 146364022 + 96380568 96387963 L1PA2 6032 - 0 6032 1249 1657 1361 0 1332 1 0 2786 1 0 257 chain 74817 chr8 146364022 + 96382308 96383109 L1HS 6032 - 0 801 46106 801 chain 45044 chr8 146364022 + 96383109 96383586 L1HS 6032 + 4762 5239 62685 477 chain 49275 chr8 146364022 + 96409191 96409956 LTR12 884 - 148 884 59531 24 101 1 204 15 4 49 8 0 58 0 22 84 0 2 107 0 66 115 chain 105070 chr8 146364022 + 96421660 96422834 L1P1 4361 - 233 1408 35485 68 0 1 1106 chain 47398 chr8 146364022 + 96440687 96441219 L1PA3long 6157 - 16 550 60903 130 3 5 399 chain 4901 chr8 146364022 + 96458352 96458414 MER46C 351 + 278 341 196264 48 0 1 14 chain 44110 chr8 146364022 + 96458439 96458930 L1PA3long 6157 - 0 492 64075 337 1 2 153 chain 78160 chr8 146364022 + 96461336 96462301 L1PA7 6471 - 6 978 44434 146 2 1 250 0 1 290 1 2 53 3 0 7 2 6 84 0 4 103 0 1 24 chain 15464 chr8 146364022 + 96470720 96470942 THE1C 375 + 156 375 140005 23 33 30 166 chain 64005 chr8 146364022 + 96511961 96512754 L1PA7 6471 + 5672 6466 51004 131 0 1 52 0 3 35 0 2 284 0 3 130 20 12 141 chain 32790 chr8 146364022 + 96519817 96520208 L1PA7 6471 - 48 441 79550 114 1 2 174 2 3 100 chain 22033 chr8 146364022 + 96525679 96526044 THE1B 368 - 0 368 120096 75 1 0 67 17 18 33 4 3 30 41 45 97 chain 119602 chr8 146364022 + 96526044 96527618 THE1B-int 1605 - 0 1605 31181 9 1 2 194 0 1 46 0 1 4 1 0 103 13 8 157 0 4 5 0 3 183 2 1 167 7 8 29 1 0 17 1 2 22 6 9 173 0 25 215 3 2 215 chain 96299 chr8 146364022 + 96557558 96558667 L1PA7 6471 - 880 1983 37731 972 6 0 131 chain 32801 chr8 146364022 + 96558681 96559052 L1PA4 6152 + 5778 6152 79524 358 0 3 13 chain 73276 chr8 146364022 + 96559057 96559903 L1PA7 6471 + 5617 6467 46895 373 0 3 281 0 1 192 chain 557784 chr8 146364022 + 96564460 96570493 L1PA2 6032 - 4 6032 527 7 4 0 4201 1 0 1820 chain 4860 chr8 146364022 + 96577131 96577189 L1MA2 4263 + 4000 4058 196678 58 chain 9316 chr8 146364022 + 96589308 96589416 L1PA3long 6157 + 6052 6157 163986 100 3 0 5 chain 102367 chr8 146364022 + 96589618 96590751 L1PA4 6152 - 1 1138 36177 843 1 5 289 chain 482849 chr8 146364022 + 96600254 96606068 L1PA6 6164 - 2 5819 7628 6 5 0 86 8 0 6 0 8 38 1 0 478 1 0 211 7 11 899 6 5 345 0 13 866 0 1 348 2 1 512 1 2 144 0 1 222 0 1 376 0 11 101 4 5 58 37 0 583 0 17 240 1 0 222 chain 55983 chr8 146364022 + 96606130 96606816 L1PA7 6471 - 12 699 55129 134 26 27 526 chain 52274 chr8 146364022 + 96625985 96627102 L1PB1 5432 - 5 760 57446 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 29 14 0 17 1 0 45 1 0 15 2 1 53 2 0 5 8 4 12 1 0 9 1 0 23 1 0 8 332 4 55 0 1 239 9 10 125 chain 9556 chr8 146364022 + 96627110 96627225 L1PB1 5432 + 4446 4561 162804 115 chain 181161 chr8 146364022 + 96632809 96634797 L1PA3long 6157 - 0 1987 20886 259 2 0 79 0 1 1648 chain 3118 chr8 146364022 + 96637627 96637701 MER5A1 166 + 0 74 222590 22 28 28 24 chain 6113 chr8 146364022 + 96646852 96646946 L1PA15 4387 - 90 180 184325 27 8 5 48 1 0 10 chain 11792 chr8 146364022 + 96691459 96691644 MER30 238 - 1 199 153076 38 3 0 73 4 0 6 9 28 17 1 2 34 chain 78179 chr8 146364022 + 96728664 96729531 L1PA3long 6157 - 4 872 44425 671 0 2 188 1 0 7 chain 53433 chr8 146364022 + 96729542 96730130 L1PA3long 6157 + 4721 5309 56737 588 chain 28709 chr8 146364022 + 96730509 96730814 AluYb8 318 + 0 304 90298 132 1 0 172 chain 3422 chr8 146364022 + 96732067 96732106 MADE1 96 + 46 85 216724 39 chain 98039 chr8 146364022 + 96759374 96760448 L1PA3long 6157 + 5082 6157 37267 925 0 1 149 chain 34623 chr8 146364022 + 96769519 96769899 L1PA4 6152 - 922 1302 76199 380 chain 82686 chr8 146364022 + 96769899 96770840 L1PA4 6152 + 5212 6152 42468 771 2 1 168 chain 23816 chr8 146364022 + 96792426 96792767 THE1A 353 + 0 353 111390 60 9 23 17 11 10 92 1 0 151 chain 79482 chr8 146364022 + 96792767 96794070 THE1A-int 1579 + 0 992 43835 93 0 1 27 312 0 48 2 1 5 0 1 816 chain 6154 chr8 146364022 + 96794092 96794163 THE1A 353 + 131 202 183953 71 chain 8880 chr8 146364022 + 96794164 96794271 THE1A 353 + 202 310 166229 76 0 1 31 chain 200224 chr8 146364022 + 96809254 96811525 L1P1 4361 - 20 2295 19193 12 2 1 23 1 0 155 1 0 683 1 2 235 0 2 338 0 1 365 0 3 455 chain 16168 chr8 146364022 + 96816812 96817013 L1PA16 3655 + 2915 3116 137848 201 chain 18902 chr8 146364022 + 96825539 96826010 L1PB1 5432 - 5 410 130361 5 2 0 18 1 0 11 6 5 18 1 0 15 33 28 18 8 0 9 2 0 4 1 0 15 1 0 39 24 22 34 1 0 18 2 0 9 2 0 3 2 0 12 1 0 10 1 0 20 45 11 59 7 8 14 chain 250332 chr8 146364022 + 96827578 96831049 L1PBa 3878 - 130 3649 16225 11 2 0 21 2 1 80 0 2 119 1 2 292 3 0 167 1 2 14 2 0 20 9 10 223 0 1 68 3 2 8 8 0 62 6 0 117 1 0 4 0 1 258 1 0 128 0 1 52 0 1 245 6 5 30 0 1 11 7 10 20 0 39 104 10 0 24 5 6 121 1 0 16 1 3 150 4 5 38 6 0 6 1 6 163 0 6 92 1 0 23 7 8 88 0 4 5 2 1 30 0 1 40 12 10 138 11 10 98 1 0 119 27 28 25 27 55 61 5 0 7 chain 136597 chr8 146364022 + 96835684 96837359 LTR12C 1709 + 0 1709 26715 574 5 4 232 0 40 262 1 0 8 2 0 104 0 4 235 38 9 69 1 0 16 18 41 10 14 15 86 chain 7528 chr8 146364022 + 96838292 96838394 Tigger1 2417 - 2257 2363 173988 66 3 7 33 chain 90619 chr8 146364022 + 96882849 96884040 HERVL-int 5654 - 2621 5654 39420 165 0 1 81 1 0 407 12 1858 80 2 0 5 0 2 148 1 0 213 3 4 7 1 0 46 8 5 11 chain 28694 chr8 146364022 + 96884192 96884562 MLT2A1 477 - 94 477 90352 213 4 1 64 4 20 85 chain 230834 chr8 146364022 + 96885787 96889166 L1PA13 3608 + 163 3515 17264 14 3 0 24 28 17 71 2 0 19 0 2 103 1 0 15 1 0 17 2 0 15 8 3 18 2 1 18 3 1 15 2 0 18 1 0 80 1 0 17 6 12 41 0 9 205 7 6 101 2 0 101 10 1 48 0 3 143 9 13 86 0 3 174 0 2 327 0 1 34 6 19 33 31 33 174 25 26 109 0 1 260 0 2 14 1 0 6 17 7 104 0 2 266 16 20 103 7 0 7 2 1 8 0 1 22 1 0 115 2 0 60 1 0 24 1 0 38 2 0 47 2 0 5 2 0 18 29 25 13 5 0 11 chain 112552 chr8 146364022 + 96894174 96895472 L1PA5 6144 - 6 1289 33516 669 27 10 171 0 1 102 0 1 329 chain 18825 chr8 146364022 + 96895472 96895685 L1PA5 6144 + 4641 4854 130102 213 chain 7685 chr8 146364022 + 96912647 96913097 MLT1D 503 - 7 482 173012 26 30 33 46 0 4 16 292 310 40 chain 46961 chr8 146364022 + 96932884 96933467 L1PA8 5853 + 5278 5853 61242 286 1 0 44 2 0 70 2 1 8 3 1 56 1 0 16 1 0 93 chain 517831 chr8 146364022 + 96940118 96946263 L1PA6 6164 - 2 6164 5391 6 6 0 329 0 1 510 0 4 942 0 2 413 0 1 253 1 0 33 1 2 474 0 2 5 1 3 275 1 0 500 2 0 76 1 2 1236 0 3 10 3 0 901 0 28 12 15 0 139 chain 26619 chr8 146364022 + 96992652 96993130 L1PA15 4387 - 31 494 97602 27 5 0 14 7 5 37 14 11 41 8 7 7 4 0 19 5 4 45 9 8 27 1 0 51 0 2 14 17 18 87 1 0 25 0 1 13 chain 28761 chr8 146364022 + 97004680 97004981 AluYa5 310 - 9 310 90066 301 chain 4550 chr8 146364022 + 97045300 97045351 LTR9B 643 - 576 627 200212 51 chain 504166 chr8 146364022 + 97045361 97051478 L1PA5 6144 - 0 6144 6587 406 3 0 267 0 18 490 0 1 963 0 1 308 0 5 183 1 0 1003 0 1 209 0 6 109 0 2 398 11 7 204 6 9 104 5 0 7 2 9 265 13 4 213 26 0 129 0 17 548 7 8 39 6 5 72 1 15 119 chain 5057 chr8 146364022 + 97051841 97051900 MLT1F 544 + 345 404 194563 59 chain 23388 chr8 146364022 + 97065668 97065955 AluYg6 310 + 20 305 113716 28 18 16 241 chain 535205 chr8 146364022 + 97082651 97088783 L1PA5 6144 + 0 6138 3571 172 0 5 6 15 10 233 1 0 538 1 0 4 0 1 341 0 1 1086 0 2 496 2 0 348 0 3 429 1 0 325 0 1 883 0 1 335 0 1 79 0 4 342 0 1 91 3 0 153 1 0 247 chain 29169 chr8 146364022 + 97098088 97098395 AluYk11 308 + 0 307 88204 307 chain 61872 chr8 146364022 + 97114857 97115541 L1PA5 6144 - 1 685 51960 684 chain 549666 chr8 146364022 + 97128905 97134926 L1PA2 6032 + 7 6032 1495 67 0 1 181 1 0 950 0 1 990 0 1 1551 0 2 2281 chain 12588 chr8 146364022 + 97180760 97180904 L1PA7 6471 - 2 146 149890 144 chain 58326 chr8 146364022 + 97187347 97188002 L1PA4 6152 + 5488 6143 53793 655 chain 25109 chr8 146364022 + 97191221 97191525 AluY 311 + 0 311 104232 47 0 6 82 1 0 142 1 3 31 chain 139140 chr8 146364022 + 97202754 97204435 L1PA7 6471 - 19 1697 26271 143 1 0 606 1 0 77 20 9 370 7 16 34 1 2 421 chain 86776 chr8 146364022 + 97204435 97205437 L1PA7 6471 + 3771 4775 40803 229 1 0 405 1 0 266 0 4 100 chain 45028 chr8 146364022 + 97214694 97215437 L1MA5A 2387 - 136 889 63024 21 32 16 27 2 0 17 0 2 13 2 0 29 19 18 41 0 15 18 4 6 166 17 22 16 9 10 105 0 4 67 3 2 69 9 12 57 chain 3758 chr8 146364022 + 97244326 97244371 MADE1 96 - 1 47 210982 25 0 1 20 chain 12683 chr8 146364022 + 97301583 97301742 MER21C 908 - 695 855 149517 53 0 1 106 chain 8093 chr8 146364022 + 97321451 97321548 HY3 101 - 2 99 170528 97 chain 3831 chr8 146364022 + 97368223 97368267 Tigger3c 601 + 38 82 209926 44 chain 6911 chr8 146364022 + 97370464 97370547 MER33 330 - 119 202 178106 83 chain 27516 chr8 146364022 + 97410660 97411017 THE1B 368 - 12 367 94614 15 0 1 45 2 0 102 2 0 4 0 1 16 1 0 147 0 1 23 chain 28631 chr8 146364022 + 97431180 97431480 AluYa5 310 - 10 310 90603 300 chain 27170 chr8 146364022 + 97433344 97433720 L1PA8 5853 - 0 375 95693 93 1 0 19 2 1 52 2 1 7 1 0 72 2 0 22 7 13 9 1 0 86 chain 28901 chr8 146364022 + 97439411 97439775 THE1B 368 - 0 368 89452 126 1 0 12 1 0 16 0 4 10 0 3 28 1 0 169 chain 19926 chr8 146364022 + 97439778 97442959 L1MA3 4352 - 1575 4330 127371 191 2662 2302 50 0 4 8 96 48 11 15 0 7 1 0 20 5 1 54 1 0 44 1 0 15 chain 7261 chr8 146364022 + 97443298 97443387 U6 107 - 17 106 175705 89 chain 95836 chr8 146364022 + 97464366 97465716 LTR12C 1709 + 0 1709 37866 211 15 3 72 9 14 37 14 61 63 0 3 6 7 4 89 3 5 41 5 6 35 0 278 143 0 47 97 20 13 277 1 0 116 7 6 82 chain 6750 chr8 146364022 + 97467142 97467271 MLT2D 439 - 308 439 179319 33 0 1 7 38 39 51 chain 154130 chr8 146364022 + 97484472 97486187 L1PA4 6152 - 0 1719 24080 658 0 2 184 1 5 674 2 0 196 chain 23154 chr8 146364022 + 97517036 97517326 LTR7 482 - 38 360 114875 167 0 31 21 0 1 102 chain 3085 chr8 146364022 + 97545600 97545635 LTR12C 1709 - 991 1026 223204 35 chain 13469 chr8 146364022 + 97545764 97545984 LTR12C 1709 - 551 936 146455 32 1 130 42 24 61 56 1 0 64 chain 5695 chr8 146364022 + 97553827 97553901 L1MB3 1562 + 1343 1416 188150 11 1 0 62 chain 126926 chr8 146364022 + 97568636 97570016 L1PA2 6032 + 4652 6032 28831 1380 chain 28551 chr8 146364022 + 97588644 97588946 AluYa5 310 - 8 310 90953 302 chain 23570 chr8 146364022 + 97606936 97607266 THE1C 375 - 41 375 112740 20 1 0 117 11 12 46 5 9 130 chain 92679 chr8 146364022 + 97689277 97690624 L1PB2 3958 - 120 1451 38759 63 2 1 17 8 6 16 5 6 48 1 0 64 1 0 20 2 1 42 9 8 91 22 16 30 0 2 29 3 0 71 2 0 234 0 1 132 23 20 150 22 23 240 chain 6406 chr8 146364022 + 97707090 97707162 L1PA3long 6157 - 1509 1581 180587 72 chain 138311 chr8 146364022 + 97707162 97708678 L1PA3long 6157 + 4640 6156 26432 1516 chain 33068 chr8 146364022 + 97728583 97729622 L1PB1 5432 - 15 622 79100 13 1 0 11 1 0 23 1 0 24 2 0 13 57 41 11 1 0 44 1 0 16 2 1 50 476 67 34 1 2 257 chain 120675 chr8 146364022 + 97730459 97731877 LTR12C 1709 - 0 1709 30807 114 0 10 357 0 4 106 8 165 78 0 1 20 0 118 469 0 1 266 chain 29569 chr8 146364022 + 97749567 97749976 MLT2A1 477 - 26 477 86336 30 0 38 170 11 10 29 1 5 26 0 1 142 chain 542983 chr8 146364022 + 97750691 97756725 L1PA3long 6157 - 1 6153 2345 2497 11 0 2753 11 139 614 0 1 148 chain 115132 chr8 146364022 + 97763443 97765014 L1PA11 4918 - 340 1895 32742 11 2 0 13 1 0 15 83 67 65 17 14 62 5 0 500 0 3 16 1 0 119 0 4 21 1 2 4 1 0 22 0 3 250 0 2 362 chain 2553 chr8 146364022 + 97786513 97786558 MLT1A1 405 - 357 405 232454 11 0 1 17 4 6 13 chain 18576 chr8 146364022 + 97805463 97805749 THE1B 368 - 12 308 131293 107 41 51 19 0 1 6 1 0 112 chain 12471 chr8 146364022 + 97833746 97833912 HSMAR2 1300 - 1124 1299 150372 111 1 3 10 0 7 44 chain 3747 chr8 146364022 + 97892403 97892487 L1PA17 2846 + 2649 2711 211216 44 25 3 15 chain 19993 chr8 146364022 + 97893386 97893782 MSTA 426 - 0 414 127165 58 0 1 50 2 5 11 7 0 6 10 22 27 20 19 12 1 10 7 5 0 39 12 16 39 11 12 31 9 10 39 chain 6778 chr8 146364022 + 97900287 97900451 MER20 218 - 40 195 179123 51 71 62 42 chain 41011 chr8 146364022 + 97901699 97902232 MLT2A2 560 - 0 560 67887 6 0 4 345 25 48 157 chain 132055 chr8 146364022 + 97902232 97903920 HERVL-int 5654 - 0 1718 27623 69 0 11 145 0 5 36 10 14 43 0 1 240 0 1 200 0 3 234 10 0 48 1 2 227 0 11 176 0 1 241 0 2 8 chain 19872 chr8 146364022 + 97910804 97911017 L1HS 6032 + 5819 6032 127585 213 chain 19912 chr8 146364022 + 97938916 97939147 L1PA7 6471 - 10 241 127429 231 chain 73378 chr8 146364022 + 97966834 97967660 L1PA4 6152 - 9 834 46846 251 1 0 574 chain 65798 chr8 146364022 + 97967662 97968391 L1PA4 6152 + 4550 5279 50197 729 chain 202508 chr8 146364022 + 98012773 98015611 L1PA13 3608 - 61 2856 19023 9 2 0 3 1 0 10 52 37 40 2 0 5 2 0 47 2 0 5 1 0 56 1 0 63 15 13 99 1 0 32 1 0 317 12 8 385 41 12 35 0 1 27 1 4 39 0 3 207 0 1 123 0 4 438 15 19 39 0 5 90 7 1 262 2 0 67 5 9 196 0 3 81 chain 413519 chr8 146364022 + 98030184 98035691 L1PB1 5432 + 19 5420 9711 11 1 0 73 11 13 21 3 4 18 0 1 241 2 0 143 1 0 191 1 10 211 0 1 202 0 4 7 2 1 198 0 14 20 8 0 142 0 4 14 0 1 76 2 3 71 0 2 298 2 0 480 1 2 127 5 6 234 1 2 637 11 25 199 11 6 51 0 4 165 35 15 25 1 0 471 1 2 68 0 2 479 0 2 35 97 42 9 1 0 7 48 0 8 1 6 11 1 0 12 1 0 11 5 1 11 3 1 49 1 0 18 1 0 37 7 6 16 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 560766 chr8 146364022 + 98051716 98057861 L1PA3long 6157 - 2 6152 322 21 0 1 314 0 1 3877 0 3 1933 chain 38672 chr8 146364022 + 98066343 98066956 L1PB3 3668 + 3034 3620 71190 190 0 2 65 1 0 100 20 19 68 23 7 43 3 1 33 11 7 13 2 1 12 6 3 16 1 0 6 chain 14840 chr8 146364022 + 98076097 98076318 L1PA13 3608 - 140 353 141811 20 2 0 4 2 0 48 13 10 16 0 1 7 0 1 27 1 0 61 2 0 18 chain 8197 chr8 146364022 + 98084739 98084828 L1PB 1623 + 1066 1155 169965 89 chain 65998 chr8 146364022 + 98104686 98105677 L1PA15 4387 + 3307 4287 50098 377 0 5 123 21 15 59 8 6 41 1 0 163 4 3 5 1 0 26 2 0 18 19 24 12 2 1 20 4 0 11 2 1 22 0 1 22 14 11 14 chain 19674 chr8 146364022 + 98159972 98160314 THE1B 368 + 0 368 128184 37 3 18 114 1 0 28 43 56 50 0 3 5 22 18 39 chain 19981 chr8 146364022 + 98162623 98162921 THE1B 368 + 0 306 127204 27 0 1 124 0 5 12 1 0 11 0 1 4 2 1 13 0 3 11 16 17 12 1 0 64 chain 29573 chr8 146364022 + 98187256 98187691 LTR7Y 441 + 0 441 86306 103 12 3 54 69 84 197 chain 297810 chr8 146364022 + 98187697 98191338 HERVH-int 3825 + 16 3825 13536 516 129 0 38 1 0 10 1 0 24 1 52 42 2 1 18 0 1 5 9 7 49 1 0 179 0 1 482 0 1 157 0 5 81 4 31 959 0 1 157 2 1 236 16 21 29 8 218 260 0 2 225 chain 3442 chr8 146364022 + 98188218 98188256 HERVH-int 3825 + 532 570 216348 38 chain 29699 chr8 146364022 + 98192526 98192967 LTR7Y 441 + 0 441 85828 103 9 0 57 75 84 197 chain 22207 chr8 146364022 + 98201447 98201832 THE1D 372 - 0 372 119317 121 8 0 27 1 0 7 46 51 86 5 6 17 11 1 56 chain 10756 chr8 146364022 + 98210269 98210403 L1PA8 5853 + 5719 5853 157174 4 0 1 36 1 0 93 chain 39756 chr8 146364022 + 98212997 98213448 LTR7 482 + 0 482 69675 261 0 31 190 chain 300169 chr8 146364022 + 98213450 98217185 HERVH-int 3825 + 0 3825 13416 212 4 15 305 132 0 38 1 0 10 1 0 26 0 13 12 3 0 26 25 3 60 21 0 9 2 1 49 1 0 292 0 1 520 1 7 86 4 31 290 0 4 1110 8 218 36 0 1 5 1 0 445 chain 40470 chr8 146364022 + 98218433 98218884 LTR7 482 + 0 482 68637 247 0 31 204 chain 23776 chr8 146364022 + 98245390 98245672 AluSp 311 + 21 301 111616 268 2 0 12 chain 9347 chr8 146364022 + 98284598 98284719 MLT1B 390 + 251 375 163814 4 1 0 59 0 2 12 0 2 45 chain 559583 chr8 146364022 + 98307831 98313841 L1PA2 6032 + 4 6014 382 6010 chain 119467 chr8 146364022 + 98334526 98335956 L1PA6 6164 - 2 1441 31236 271 7 11 420 12 15 137 1 0 265 1 0 304 0 4 12 chain 521454 chr8 146364022 + 98341424 98347823 L1PA7 6471 - 1 6468 5012 5 2 0 324 4 7 119 18 6 269 0 1 35 8 9 71 2 0 222 0 1 129 6 0 239 5 19 120 0 49 45 0 1 105 7 18 97 0 1 4 1 0 568 9 0 902 0 4 466 1 2 132 1 4 4 1 0 1097 0 1 146 9 13 64 0 1 81 3 6 675 1 3 402 chain 4070 chr8 146364022 + 98357460 98357511 MER53 195 + 43 94 206318 51 chain 12694 chr8 146364022 + 98359849 98359997 MSTB 430 - 266 414 149467 148 chain 13132 chr8 146364022 + 98370492 98370703 U3 216 + 0 213 147714 85 37 40 70 1 0 18 chain 50059 chr8 146364022 + 98381505 98383393 L1PB1 5432 + 4601 5422 58977 28 0 1 9 1018 0 260 0 2 22 1 0 172 11 10 11 21 0 22 1 0 8 1 0 10 18 12 52 2 1 10 7 6 44 1 0 11 69 54 24 4 3 19 18 16 14 chain 5955 chr8 146364022 + 98394265 98394334 LTR39 781 + 42 112 185637 65 0 1 4 chain 12457 chr8 146364022 + 98395461 98395658 MSTA-int 1630 - 7 211 150431 109 0 6 22 29 30 37 chain 8865 chr8 146364022 + 98398084 98398191 MER21C 908 + 713 819 166305 54 1 0 52 chain 379406 chr8 146364022 + 98414619 98420029 L1PB1 5432 - 10 5410 10774 18 1 0 13 1 0 21 1 0 24 2 0 11 14 11 19 9 1 4 2 0 4 1 0 14 1 0 46 18 16 12 0 2 31 24 18 13 1 0 6 1 0 24 3 0 9 1 2 37 4 5 134 0 1 43 8 0 114 0 1 139 0 1 197 0 1 218 0 3 242 3 4 241 2 0 261 0 1 70 0 1 134 1 0 228 4 9 10 7 8 5 1 0 106 0 3 46 33 32 212 0 5 90 10 6 44 17 11 12 0 6 708 1 2 293 11 8 12 11 13 140 0 4 100 6 2 253 8 10 97 11 14 79 0 4 88 0 4 13 19 19 7 2 0 6 0 2 182 1 0 47 18 17 20 51 52 204 chain 75163 chr8 146364022 + 98427610 98428458 L1PA4 6152 + 5297 6152 45943 93 0 1 137 0 2 206 0 4 412 chain 35381 chr8 146364022 + 98434452 98434949 MER41C 542 + 0 542 75692 44 5 6 40 0 4 67 1 37 4 1 0 112 1 2 18 0 2 174 4 6 26 chain 89300 chr8 146364022 + 98441145 98442176 L1PA5 6144 + 5119 6144 39885 416 15 9 600 chain 27145 chr8 146364022 + 98460329 98460640 AluSp 311 - 0 311 95776 311 chain 12569 chr8 146364022 + 98466588 98466739 L1PA7 6471 + 6319 6468 149968 138 3 1 10 chain 32661 chr8 146364022 + 98468317 98468839 MLT2A1 477 - 0 477 79749 37 44 55 180 1 2 23 0 1 9 4 1 55 55 0 114 chain 32414 chr8 146364022 + 98469249 98469681 L1PB1 5432 + 4666 5098 80181 41 0 1 6 4 3 80 11 11 290 chain 478053 chr8 146364022 + 98494342 98500000 L1PA6 6164 - 2 5653 7799 793 0 1 49 1 5 420 3 1 200 22 22 490 1 2 283 0 1 199 2 0 477 1 2 25 0 1 5 1 0 852 16 0 1294 0 1 368 5 8 133 0 1 18 chain 89653 chr8 146364022 + 98507378 98509057 L1MA2 4263 + 2641 4114 39764 4 1 0 255 4 8 65 1 0 98 311 1 9 0 10 23 8 0 48 0 102 35 14 15 10 21 0 31 0 2 53 0 10 47 0 5 102 4 13 37 4 1 17 0 4 15 2 1 134 13 10 29 0 1 89 2 1 30 2 1 8 1 0 37 1 2 48 14 11 40 2 1 10 chain 58824 chr8 146364022 + 98512675 98513689 L1PB1 5432 - 31 981 53506 8 1 0 23 1 0 24 2 0 14 1 0 7 2 0 16 23 13 15 1 0 41 10 9 10 2 1 52 32 25 5 1 0 23 13 0 13 24 23 77 1 0 47 52 34 108 0 1 4 5 4 176 3 0 177 chain 59309 chr8 146364022 + 98528194 98528837 L1PA2 6032 + 5376 6019 53217 643 chain 33940 chr8 146364022 + 98534310 98534912 L1PA15 4387 + 3783 4356 77711 26 9 8 28 3 1 42 2 0 45 1 0 163 9 8 26 1 0 19 8 3 33 1 0 21 4 0 10 4 3 37 25 22 36 22 15 27 chain 520188 chr8 146364022 + 98534940 98541389 L1PA5 6144 - 0 6139 5138 368 318 0 617 0 3 491 6 7 305 0 4 1151 1 2 373 0 7 348 2 3 153 23 10 517 4 0 280 0 1 333 9 0 85 0 1 951 1 15 18 5 6 90 chain 527305 chr8 146364022 + 98542116 98548963 L1PA7 6471 + 4 6468 4467 60 0 23 316 0 1 162 17 0 148 1 0 4 0 1 261 10 11 11 0 8 240 6 0 300 2 0 83 0 2 312 1 0 328 0 2 31 1 6 56 6 5 145 0 2 109 4 1 361 3 0 11 0 3 89 0 4 384 8 8 11 9 8 38 0 4 256 2 0 482 51 0 267 348 0 56 7 8 30 0 1 332 1 0 420 0 1 215 2 0 837 3 0 10 chain 3083 chr8 146364022 + 98555392 98555424 MER52C 1267 + 941 973 223290 32 chain 76848 chr8 146364022 + 98557938 98559131 L1PA5 6144 + 5266 6140 45059 502 319 0 372 chain 12390 chr8 146364022 + 98573401 98573543 L1PA4 6152 + 6012 6152 150664 135 2 0 5 chain 20285 chr8 146364022 + 98580331 98580666 MER87B 500 - 94 434 126270 85 52 44 20 11 20 53 0 4 114 chain 24832 chr8 146364022 + 98585894 98586266 THE1C 375 - 0 375 105715 26 24 22 241 26 31 55 chain 30558 chr8 146364022 + 98595413 98595731 AluYb8 318 - 0 318 83305 318 chain 559679 chr8 146364022 + 98601819 98607952 L1PA3long 6157 - 8 6157 373 274 0 3 2352 0 2 165 0 1 96 0 4 1071 0 1 1507 0 1 377 0 4 291 chain 6295 chr8 146364022 + 98609332 98609405 MLT2B4 540 - 467 540 182850 73 chain 98706 chr8 146364022 + 98616593 98617791 SVA_B 1603 + 0 1264 37099 18 0 32 662 3 4 35 42 39 131 4 0 29 0 40 274 chain 3215 chr8 146364022 + 98617311 98617353 SVA_B 1603 + 671 713 128834 42 chain 28749 chr8 146364022 + 98624227 98624528 AluYb8 318 + 0 301 90129 301 chain 3483 chr8 146364022 + 98637755 98637798 MADE1 96 + 51 96 215625 18 0 2 25 chain 8205 chr8 146364022 + 98661258 98661410 Tigger3a 397 + 139 371 169928 21 0 10 31 0 1 45 37 106 18 chain 10742 chr8 146364022 + 98666797 98666942 L1PA8 5853 - 0 143 157234 92 2 1 19 2 1 30 chain 3560 chr8 146364022 + 98672852 98672896 MER58D 378 + 330 374 214336 44 chain 26761 chr8 146364022 + 98683180 98683482 AluYb8 318 - 6 306 97121 249 2 0 51 chain 28445 chr8 146364022 + 98747597 98748000 LTR66 600 - 206 600 91392 16 3 0 7 3 6 34 26 16 128 0 1 186 chain 33608 chr8 146364022 + 98759967 98760384 MER41A 554 - 120 554 78229 4 1 0 73 0 3 94 1 16 244 chain 21621 chr8 146364022 + 98778477 98778736 AluSp 311 - 38 297 121694 259 chain 68486 chr8 146364022 + 98782414 98783156 L1PA3long 6157 + 5405 6147 49049 742 chain 29432 chr8 146364022 + 98783461 98783770 AluYa5 310 + 1 310 86931 309 chain 6609 chr8 146364022 + 98784549 98784648 HY1 111 + 9 108 180385 65 13 13 21 chain 20919 chr8 146364022 + 98785778 98786046 AluSp 311 - 17 281 124214 156 11 7 101 chain 23151 chr8 146364022 + 98794209 98794498 AluSp 311 - 13 301 114889 184 8 7 97 chain 4127 chr8 146364022 + 98808456 98808505 MER41B 635 - 184 233 205560 49 chain 12332 chr8 146364022 + 98819205 98819345 THE1A 353 + 213 353 150887 140 chain 37085 chr8 146364022 + 98833570 98834137 LTR14B 630 - 0 620 73407 78 0 5 113 2 0 5 43 15 14 0 9 19 0 21 100 21 63 144 0 6 28 chain 4689 chr8 146364022 + 98853265 98853417 SVA_F 1814 - 545 1037 198652 26 50 147 30 1 0 4 15 259 26 chain 40270 chr8 146364022 + 98892502 98892986 LTR15 485 + 0 481 68915 30 2 0 247 2 0 30 0 3 110 7 5 56 chain 33752 chr8 146364022 + 98898091 98898636 MER1A 529 + 0 529 78020 18 20 28 34 14 18 77 51 0 45 0 22 104 1 0 110 7 9 64 chain 26144 chr8 146364022 + 98937204 98937618 MER57A1 433 - 0 420 99427 9 1 0 7 0 1 94 19 22 23 0 1 29 7 8 148 26 27 51 chain 31723 chr8 146364022 + 98998547 98999447 L1PB1 5432 - 10 581 81293 18 1 0 8 7 6 25 1 0 19 2 0 5 18 15 18 12 15 4 0 1 7 1 0 43 6 5 63 35 28 4 1 0 24 20 16 168 311 0 79 chain 20103 chr8 146364022 + 99030757 99031100 THE1B 368 - 12 368 126818 113 35 45 21 0 1 7 1 0 16 4 3 18 22 25 84 0 1 22 chain 123082 chr8 146364022 + 99063342 99064739 SVA_B 1603 - 5 1559 30015 585 1 0 37 0 42 222 0 116 552 chain 5627 chr8 146364022 + 99073527 99073596 MLT1B 390 + 283 352 188801 17 1 0 21 0 1 30 chain 23232 chr8 146364022 + 99096622 99096900 AluSq10 312 - 24 304 114535 89 2 4 187 chain 4608 chr8 146364022 + 99158338 99158391 FLAM_A 137 - 18 71 199528 53 chain 14868 chr8 146364022 + 99186197 99186569 MLT1A 405 + 24 391 141724 7 1 0 8 12 16 19 12 6 95 70 75 10 2 0 7 27 28 9 6 0 87 chain 4348 chr8 146364022 + 99199551 99199600 MER96 175 + 24 73 202617 49 chain 8398 chr8 146364022 + 99202850 99202957 MER58A 224 + 53 160 168866 107 chain 11954 chr8 146364022 + 99233772 99233918 L1PA7 6471 - 1 144 152389 9 3 0 134 chain 58851 chr8 146364022 + 99269243 99270316 MER4D1 891 + 0 883 53487 40 16 18 62 2 1 190 231 6 97 1 0 16 1 0 34 5 23 39 0 1 21 11 23 32 0 5 28 0 1 137 0 1 46 1 0 57 1 0 5 chain 29099 chr8 146364022 + 99271298 99271602 AluYg6 310 - 6 310 88562 304 chain 555195 chr8 146364022 + 99272503 99278521 L1PA2 6032 + 10 6030 806 64 0 1 182 1 0 489 0 1 1684 0 1 1128 2 1 260 0 1 2208 chain 50190 chr8 146364022 + 99281164 99281834 Tigger1 2417 - 530 1216 58876 149 0 6 49 0 1 139 12 21 321 chain 66420 chr8 146364022 + 99300270 99300992 L1PA2 6032 - 5 725 49907 6 2 0 714 chain 4933 chr8 146364022 + 99309176 99309243 LTR64 526 + 461 526 195894 54 2 0 11 chain 110977 chr8 146364022 + 99319388 99320587 L1PA2 6032 - 10 1209 33938 1199 chain 2562 chr8 146364022 + 99320587 99320614 L1PA2 6032 + 4811 4838 227887 27 chain 14360 chr8 146364022 + 99322713 99322888 LTR39 781 - 563 738 143341 175 chain 23596 chr8 146364022 + 99331167 99331524 THE1B 368 - 0 368 112602 64 6 7 54 29 42 6 1 0 26 2 0 169 chain 120251 chr8 146364022 + 99331533 99333095 THE1B-int 1605 - 10 1605 30964 306 6 10 670 0 1 43 1 2 44 25 25 38 1 26 239 7 6 68 1 4 32 2 0 64 0 2 15 chain 93199 chr8 146364022 + 99361527 99362758 THE1B-int 1605 - 331 1605 38601 88 46 50 50 1 2 69 7 8 169 0 12 369 0 25 432 chain 3614 chr8 146364022 + 99364626 99364692 Tigger4b 360 + 0 66 213432 27 7 0 7 1 8 24 chain 13121 chr8 146364022 + 99391983 99392336 L1MB1 2102 + 1708 2051 147765 31 1 0 8 1 0 7 1 0 90 100 97 41 41 38 18 1 0 13 chain 27003 chr8 146364022 + 99396254 99396715 MER51E 476 + 0 476 96274 129 0 4 10 2 37 11 28 0 165 0 23 7 1 29 17 55 8 36 chain 17236 chr8 146364022 + 99399752 99399964 AluSp 311 + 58 277 134963 163 10 17 39 chain 4521 chr8 146364022 + 99460135 99460183 L1PA3long 6157 + 6094 6142 200551 48 chain 11233 chr8 146364022 + 99470513 99470763 L1PB 1623 - 179 408 155294 47 7 11 29 81 56 86 chain 8534 chr8 146364022 + 99475171 99475278 U6 107 - 0 107 168110 107 chain 14961 chr8 146364022 + 99483652 99483880 MER47A 366 - 55 296 141443 8 0 12 67 6 5 105 15 17 27 chain 420702 chr8 146364022 + 99512604 99518191 L1PA8 5853 - 0 5599 9520 81 20 36 23 7 6 4 0 1 13 2 1 9 3 2 45 54 8 16 2 0 46 1 0 39 2 1 417 3 0 6 3 6 80 0 4 1304 0 2 317 0 1 250 4 1 143 6 5 17 0 3 33 7 11 14 1 0 608 10 26 115 3 0 1179 5 6 176 10 9 5 0 1 326 5 26 123 6 10 44 chain 13044 chr8 146364022 + 99585807 99585955 THE1C-int 1605 - 0 148 148064 148 chain 542442 chr8 146364022 + 99596333 99602350 L1PA3long 6157 - 5 6156 2440 844 0 4 3638 0 1 761 5 133 618 0 1 151 chain 22520 chr8 146364022 + 99602559 99602849 HERVH-int 3825 - 1715 3825 117938 106 0 4 38 0 1816 146 chain 3531 chr8 146364022 + 99615914 99615954 MSTB 430 + 7 47 214846 40 chain 2718 chr8 146364022 + 99619095 99619260 MER21C 908 + 615 776 229930 27 118 114 20 chain 556653 chr8 146364022 + 99626673 99632702 L1PA2 6032 + 0 6027 655 394 2 0 5633 chain 27243 chr8 146364022 + 99633153 99633467 AluYa5 310 - 7 310 95456 194 16 5 104 chain 9705 chr8 146364022 + 99639783 99639975 MSTB 430 + 219 418 162056 26 29 33 50 6 0 6 9 18 66 chain 549987 chr8 146364022 + 99662585 99668715 L1PA3long 6157 + 6 6149 1448 216 0 1 396 1 0 210 0 1 210 1 2 369 0 9 379 0 1 3823 0 1 525 chain 83827 chr8 146364022 + 99675102 99676058 L1PA4 6152 + 4985 5950 41971 233 0 1 63 0 4 18 0 4 642 chain 8266 chr8 146364022 + 99687704 99687807 L1MB3 1562 + 1017 1120 169582 103 chain 551200 chr8 146364022 + 99706593 99712738 L1PA3long 6157 - 13 6151 1288 785 1 2 49 0 4 517 22 0 37 0 5 381 0 8 1618 9 4 1216 10 11 61 0 1 1439 chain 531950 chr8 146364022 + 99722404 99728514 L1PA4 6152 + 21 6143 3965 557 0 2 350 0 4 265 0 1 13 0 1 22 1 0 581 0 1 227 0 1 148 1 0 1030 0 4 23 0 5 30 1 0 396 3 0 258 0 1 302 3 1 492 0 1 564 0 1 596 3 1 244 chain 16316 chr8 146364022 + 99745590 99745820 MER1B 344 + 93 332 137447 20 4 1 139 11 23 56 chain 551690 chr8 146364022 + 99750833 99756970 L1PA3long 6157 + 4 6157 1225 210 1 0 405 1 0 826 0 1 1732 0 12 66 0 3 844 0 2 558 6 2 645 0 4 7 0 1 582 1 0 253 chain 92783 chr8 146364022 + 99762817 99764455 L1PA13 3608 + 2213 3488 38721 28 4 0 7 3 1 511 1 0 43 8 7 322 1 0 7 22 21 113 342 0 48 27 24 46 1 0 5 2 0 48 2 0 4 2 0 18 1 0 22 chain 116134 chr8 146364022 + 99789995 99791268 L1PA4 6152 + 4878 6151 32403 1273 chain 9280 chr8 146364022 + 99813285 99813399 LTR12C 1709 + 931 1045 164167 114 chain 66137 chr8 146364022 + 99824505 99825274 L1PA5 6144 + 5373 6144 50032 302 0 2 467 chain 23596 chr8 146364022 + 99832929 99833213 AluY 311 + 6 290 112600 284 chain 9984 chr8 146364022 + 99848751 99848909 LTR41 747 + 598 743 160655 113 14 0 10 4 5 17 chain 394866 chr8 146364022 + 99882068 99886596 L1PA5 6144 - 1 4528 10283 8 7 0 357 0 2 399 0 1 422 1 0 301 0 1 253 0 1 892 0 4 360 0 1 827 4 1 697 chain 37988 chr8 146364022 + 99890539 99891041 LTR10F 562 + 0 562 72151 113 0 84 32 1 4 12 28 0 182 0 1 134 chain 20276 chr8 146364022 + 99891321 99891610 MER2 342 - 47 340 126291 181 3 0 27 14 21 64 chain 14107 chr8 146364022 + 99892126 99892637 HSMAR1 1287 - 1050 1262 144186 81 308 4 19 1 0 8 3 9 91 chain 2784 chr8 146364022 + 99898572 99898629 Tigger4b 360 + 0 41 228966 28 16 0 13 chain 10093 chr8 146364022 + 99899511 99899684 Tigger4a 237 + 73 237 160124 26 25 25 54 9 0 59 chain 24084 chr8 146364022 + 99909503 99909849 AluY 311 + 0 296 109835 133 2 0 15 3 0 24 32 0 115 13 0 9 chain 30647 chr8 146364022 + 99927291 99927656 MLT2A1 477 + 0 382 83129 171 3 0 8 0 20 183 chain 29127 chr8 146364022 + 99967723 99968031 AluYg6 310 + 0 308 88427 308 chain 6630 chr8 146364022 + 100014146 100014226 MLT1F1 559 - 83 163 180242 80 chain 164107 chr8 146364022 + 100039971 100041993 SVA_E 1901 - 1 1901 22795 206 0 30 405 50 0 118 4 0 41 0 1 4 61 38 4 0 1 125 3 0 4 1 0 80 30 0 26 1 0 82 40 0 285 0 1 304 3 0 145 chain 3683 chr8 146364022 + 100040582 100040632 SVA_E 1901 - 719 769 132347 3 0 1 44 1 0 2 chain 1893 chr8 146364022 + 100040828 100040860 SVA_E 1901 - 863 894 144922 30 1 0 1 chain 25042 chr8 146364022 + 100050907 100051201 AluSc 308 - 3 297 104586 294 chain 338687 chr8 146364022 + 100057144 100062218 L1PB1 5432 - 333 4788 11933 83 19 2 85 1 3 206 0 1 90 2 0 168 0 6 66 12 13 375 10 9 28 0 2 133 0 4 31 0 1 190 5 1 35 2 0 125 50 56 127 8 4 5 0 3 13 6 22 10 1 2 88 1 0 105 0 1 164 1 0 22 2 1 122 0 2 5 2 0 110 0 1 81 1 0 83 0 1 76 322 0 532 312 0 187 0 2 68 0 4 14 0 1 119 0 2 9 2 3 319 8 1 4 1 0 205 0 1 223 chain 268776 chr8 146364022 + 100062274 100065343 L1PA4 6152 - 11 3086 15245 509 0 1 323 0 4 308 0 1 1838 1 0 86 0 1 4 chain 29611 chr8 146364022 + 100065369 100065721 L1PA4 6152 - 0 350 86173 248 3 1 101 chain 381535 chr8 146364022 + 100075328 100079869 L1PA6 6164 + 0 6153 10716 467 1 0 50 1 2 308 1 0 90 10 0 137 0 1 1033 0 1601 39 1 0 277 0 8 162 7 6 181 0 4 53 0 1 898 1 5 23 0 6 801 chain 4345 chr8 146364022 + 100086411 100086465 L1M2 1805 - 291 345 202652 54 chain 529953 chr8 146364022 + 100093663 100099831 L1PA4 6152 - 9 6150 4192 143 36 0 1004 0 1 594 0 1 52 0 4 93 0 1 836 0 4 821 0 1 370 2 1 131 0 4 174 0 1 88 0 1 20 0 1 131 11 0 765 0 2 308 11 12 136 1 0 441 chain 10796 chr8 146364022 + 100106025 100106147 L1P1 4361 + 3335 3457 157006 122 chain 4785 chr8 146364022 + 100122741 100122881 MER3 215 - 8 160 197514 32 73 85 35 chain 44895 chr8 146364022 + 100137240 100137786 MLT2A2 560 - 13 560 63180 198 0 1 348 chain 3282 chr8 146364022 + 100160924 100160989 LTR75 556 - 74 140 219320 33 19 20 13 chain 2928 chr8 146364022 + 100173510 100173548 MER33 330 - 109 148 226545 34 0 1 4 chain 133693 chr8 146364022 + 100174642 100176190 LTR12C 1709 - 0 1709 27277 481 0 4 107 2 0 6 1 0 115 0 159 732 0 1 104 chain 14508 chr8 146364022 + 100190387 100190540 L1HS 6032 - 3 156 142864 153 chain 224113 chr8 146364022 + 100214671 100217733 L1PA7 6471 + 3701 6461 17646 32 10 14 34 1 0 228 320 5 142 1 0 110 0 1 409 0 4 224 3 4 144 1 0 4 0 1 566 7 11 357 0 1 469 chain 22671 chr8 146364022 + 100214979 100215290 AluY 311 + 4 298 117205 114 5 0 14 6 7 87 15 0 49 0 2 21 chain 4209 chr8 146364022 + 100230422 100230550 MER58C 217 + 66 208 204435 14 1 0 8 58 73 47 chain 54983 chr8 146364022 + 100233015 100233600 L1HS 6032 - 0 585 55715 585 chain 39070 chr8 146364022 + 100279185 100279675 THE1C-int 1605 + 22 519 70643 423 8 15 59 chain 28535 chr8 146364022 + 100281044 100281415 THE1C 375 + 1 375 91023 185 0 1 56 6 7 21 0 1 103 chain 40748 chr8 146364022 + 100302437 100302893 L1PA5 6144 + 5688 6144 68242 456 chain 6473 chr8 146364022 + 100305198 100305268 U3 216 + 0 70 181443 70 chain 138378 chr8 146364022 + 100305269 100306778 L1PA2 6032 + 4517 6029 26418 682 5 8 822 chain 527166 chr8 146364022 + 100320409 100326537 L1PA5 6144 - 1 6144 4482 10 2 1 529 1 0 1661 4 0 420 0 17 274 2 3 856 2 0 175 1 5 623 0 1 1039 4 0 6 1 5 518 chain 99912 chr8 146364022 + 100346617 100347734 L1PA3long 6157 - 2036 3151 36779 318 4 0 244 0 1 374 0 1 177 chain 182383 chr8 146364022 + 100347734 100349743 L1PA3long 6157 + 4137 6149 20749 567 0 1 496 0 2 946 chain 24086 chr8 146364022 + 100355325 100355606 AluSc 308 - 15 297 109819 21 1 0 251 0 2 8 chain 39568 chr8 146364022 + 100383549 100384034 L1PA8 5853 - 1232 1732 69464 249 0 13 108 0 2 128 chain 95648 chr8 146364022 + 100384034 100385554 L1PA8 5853 + 4633 5853 37915 172 294 0 201 1 0 3 2 0 555 1 0 44 2 0 48 8 10 15 2 1 9 1 0 49 2 1 19 1 0 57 4 6 30 chain 26753 chr8 146364022 + 100384217 100384500 AluYf4 310 + 20 303 97154 283 chain 505176 chr8 146364022 + 100422802 100429105 L1PA7 6471 - 10 6471 6521 142 5 0 6 11 16 451 16 18 212 1 0 275 1 2 61 1 2 78 0 2 55 1 10 47 0 1 134 2 1 70 0 1 60 22 1 614 0 1 21 0 11 179 1 2 405 0 128 355 0 4 289 0 2 55 0 13 41 0 1 54 6 0 324 6 5 4 0 1 32 3 0 6 0 3 22 0 1 228 3 15 376 7 1 203 0 1 22 1 4 51 4 3 723 3 1 158 7 8 449 chain 54331 chr8 146364022 + 100435972 100436601 L1PA4 6152 - 3337 3966 56143 140 0 1 130 0 1 222 3 1 134 chain 288676 chr8 146364022 + 100436602 100441510 L1PA4 6152 + 2802 6143 14109 362 9 3 10 1 0 58 2 3 65 0 1 819 0 14 190 1584 0 977 0 4 211 0 3 109 0 1 511 chain 144499 chr8 146364022 + 100438138 100439702 L1PA2 6032 - 2 1563 25373 5 2 0 144 1 0 1412 chain 6341 chr8 146364022 + 100456782 100456884 L1MB8 1703 - 630 734 182455 62 17 19 23 chain 16823 chr8 146364022 + 100467478 100467728 MSTA 426 - 0 252 136054 106 4 7 84 1 7 10 2 0 7 7 0 19 0 2 10 chain 102549 chr8 146364022 + 100470158 100471296 L1PA4 6152 - 13 1149 36120 144 1 0 309 1 0 683 chain 22353 chr8 146364022 + 100480231 100480517 L1PA5 6144 - 1 291 118688 140 4 8 142 chain 332722 chr8 146364022 + 100501088 100505227 L1P2 5180 - 2 5178 12095 4 1 0 38 1 0 49 1 0 369 37 18 700 0 3 854 2 0 302 1 0 1 0 1045 700 5 6 62 0 1 224 0 15 224 1 0 19 0 1 28 1 0 102 1 0 4 0 1 157 8 7 32 0 1 17 2 1 42 2 1 148 chain 11436 chr8 146364022 + 100510619 100510769 L1PA5 6144 + 6002 6144 154544 36 9 1 105 chain 10007 chr8 146364022 + 100531321 100531435 L1PA5 6144 - 761 879 160106 88 0 4 26 chain 66084 chr8 146364022 + 100531435 100532185 L1PA5 6144 + 5389 6140 50063 493 0 1 257 chain 7205 chr8 146364022 + 100540063 100540153 HY3 101 + 10 100 176031 90 chain 15651 chr8 146364022 + 100553570 100553816 L1PA8 5853 - 0 243 139427 42 3 0 50 2 1 19 2 1 44 8 8 9 1 0 55 0 3 11 chain 141414 chr8 146364022 + 100555129 100556701 L1PA3long 6157 + 4585 6157 25918 1572 chain 167545 chr8 146364022 + 100570657 100572570 L1PA5 6144 - 18 1935 22331 737 3 7 1173 chain 201126 chr8 146364022 + 100584541 100586826 L1PA5 6144 - 1 2298 19131 137 0 7 187 1 2 512 1 5 1213 1 0 66 0 1 167 chain 1390 chr8 146364022 + 100598918 100599063 L1PA11 4918 + 3527 3669 50841 137 3 0 5 chain 435377 chr8 146364022 + 100599063 100604780 L1PA6 6164 - 5 5242 9186 150 1 6 639 1 3 553 0 4 259 0 1 182 6 10 305 0 16 260 559 20 445 1 0 38 0 3 75 0 1 850 16 5 92 3 0 698 0 3 71 0 5 8 3 0 15 0 33 487 chain 48505 chr8 146364022 + 100601434 100601978 L1PA4 6152 - 0 544 60105 544 chain 8055 chr8 146364022 + 100604794 100605634 L1PA11 4918 + 3673 4508 50841 452 20 21 179 2 0 27 1 0 4 6 7 32 7 6 74 2 0 13 1 0 20 chain 124013 chr8 146364022 + 100613232 100614719 L1PA7 6471 - 4 1497 29697 846 1 4 71 1 0 6 5 6 74 2 0 190 0 1 246 1 5 44 chain 82167 chr8 146364022 + 100614719 100622972 L1PA7 6471 + 4417 6467 42678 259 0 4 268 7165 955 233 0 3 328 chain 3751 chr8 146364022 + 100619299 100619362 Tigger1 2417 - 2340 2388 211126 39 15 0 9 chain 18788 chr8 146364022 + 100626026 100626262 7SLRNA 320 - 36 272 130716 100 0 1 4 1 0 131 chain 6355 chr8 146364022 + 100638240 100638319 L1MB8 1703 + 596 677 182340 23 0 2 56 chain 168581 chr8 146364022 + 100676560 100678433 L1PA4 6152 - 14 1896 22212 1709 0 1 70 0 8 94 chain 65033 chr8 146364022 + 100678433 100679158 L1PA4 6152 + 3535 4259 50380 720 1 0 4 chain 23511 chr8 146364022 + 100697038 100697328 AluSg7 307 - 16 307 113068 148 4 5 138 chain 382644 chr8 146364022 + 100703799 100707939 L1PA2 6032 + 1893 6032 10674 1150 1 0 2989 chain 26336 chr8 146364022 + 100739617 100739975 THE1B 368 - 0 361 98669 184 14 13 68 0 1 57 0 5 27 2 0 6 chain 542555 chr8 146364022 + 100751065 100757200 L1PA4 6152 + 0 6143 2413 739 0 1 496 1 0 3120 0 4 473 10 7 197 0 1 263 1 8 182 1 0 652 chain 49709 chr8 146364022 + 100761350 100762154 L1MA3 4352 - 24 797 59227 12 1 0 28 1 0 5 2 1 23 6 4 19 4 0 95 112 89 298 0 1 198 chain 6202 chr8 146364022 + 100764341 100764416 FLAM_A 137 + 53 127 183567 43 1 0 31 chain 8518 chr8 146364022 + 100784724 100784837 L1MB3 1562 + 1443 1555 168202 80 1 0 32 chain 3547 chr8 146364022 + 100785523 100785560 THE1B 368 - 105 142 214593 37 chain 21096 chr8 146364022 + 100789492 100789810 THE1B 368 - 12 368 123563 37 5 13 93 0 7 6 7 2 23 4 3 81 1 15 21 0 15 40 chain 11336 chr8 146364022 + 100823633 100823795 MER5A 189 - 6 180 154933 85 13 25 64 chain 24669 chr8 146364022 + 100828336 100828621 AluSp 311 - 18 303 106614 285 chain 522044 chr8 146364022 + 100836825 100843284 L1PA7 6471 - 1 6468 4954 18 1 0 62 0 7 40 14 29 5 2 0 24 1 0 399 0 2 183 15 17 60 5 4 83 0 4 200 1 2 756 0 1 735 4 5 275 9 8 28 6 1 10 16 9 341 1 0 4 0 1 29 0 5 53 0 3 168 7 11 14 0 1 125 5 8 94 35 5 158 0 1 184 1 0 126 2 4 57 4 0 37 0 1 174 0 3 153 0 3 264 1 2 1070 0 1 400 chain 13733 chr8 146364022 + 100911788 100912109 MER6A 605 + 82 368 145497 101 9 10 16 81 41 10 5 0 38 16 25 45 chain 116161 chr8 146364022 + 100913766 100915150 L1PA7 6471 - 690 2073 32391 153 6 8 999 1 0 159 7 5 59 chain 56466 chr8 146364022 + 100915150 100915794 L1PA7 6471 + 5784 6428 54869 644 chain 127697 chr8 146364022 + 100938825 100940265 SVA_C 1631 + 21 1625 28643 33 10 0 371 0 1 256 1 0 32 0 37 100 0 138 29 1 0 607 chain 29191 chr8 146364022 + 100955922 100956351 LTR7 482 + 0 482 88088 94 9 12 32 21 28 45 8 50 44 0 1 176 chain 300670 chr8 146364022 + 100956353 100960135 HERVH-int 3825 + 0 3825 13387 93 0 1 75 1 0 43 0 11 309 5 0 37 3 2 9 1 0 24 103 0 15 1 0 12 3 0 8 46 10 7 1 0 17 42 0 25 2 1 30 1 0 50 1 0 450 16 1 211 0 1 239 8 35 1404 8 218 254 3 8 225 chain 3185 chr8 146364022 + 100956954 100957026 HERVH-int 3825 + 618 686 184748 12 4 1 25 1 0 30 chain 28296 chr8 146364022 + 100961404 100961835 LTR7 482 + 0 482 91957 38 0 2 98 56 73 10 1 2 31 4 3 8 0 31 9 0 1 176 chain 50124 chr8 146364022 + 100968212 100968860 LTR12 884 - 0 884 58925 71 3 7 83 0 103 243 2 0 16 0 91 139 0 41 65 1 0 25 chain 29826 chr8 146364022 + 100973521 100973891 THE1C 375 + 0 375 85360 40 0 5 330 chain 459774 chr8 146364022 + 100979886 100985813 L1PA8 5853 + 108 5760 8408 192 5 9 81 5 6 110 1 2 24 1 0 73 0 1 35 0 1 331 0 1 141 5 7 22 0 1 298 8 0 62 8 3 108 0 2 234 0 2 98 4 14 60 1 0 120 9 0 28 0 7 74 1 0 4 0 1 53 0 1 617 12 16 423 0 1 16 0 1 298 0 1 269 0 1 278 23 0 498 1 0 264 17 15 165 262 0 387 1 0 44 2 0 71 1 0 61 2 1 19 chain 15645 chr8 146364022 + 100998258 100998466 AluJr 308 + 83 294 139450 42 3 6 163 chain 480835 chr8 146364022 + 101002864 101008485 L1PA6 6164 + 484 6151 7698 34 0 2 47 1 0 22 0 15 183 0 17 582 0 1 128 3 1 169 1 3 363 1 2 30 1 0 250 0 1 285 0 1 645 0 3 675 0 1 380 0 1 168 0 1 149 2 0 675 0 4 72 0 2 755 chain 9874 chr8 146364022 + 101029028 101029143 L1PA4 6152 + 6026 6141 161209 115 chain 5000 chr8 146364022 + 101041973 101042033 L1PA8 5853 + 5793 5853 195137 60 chain 169249 chr8 146364022 + 101044043 101046007 L1PA6 6164 + 1796 3819 22147 417 0 2 61 1 0 59 0 1 913 2 3 271 7 0 116 0 59 21 8 12 88 chain 189911 chr8 146364022 + 101046009 101048204 L1PA6 6164 + 3819 6023 20062 952 0 9 717 2 0 80 0 1 51 0 1 393 chain 11550 chr8 146364022 + 101048205 101048349 L1PA6 6164 + 6025 6162 154100 131 7 0 6 chain 122816 chr8 146364022 + 101067691 101071848 L1M1 2793 + 781 2695 30109 21 1 0 29 2 0 10 1 0 24 2237 9 19 25 23 8 2 0 6 0 2 71 1 0 178 0 1 17 0 3 71 28 33 47 0 1 198 0 1 11 53 58 24 47 0 24 0 1 196 12 8 169 1 0 29 1 15 18 1 4 8 0 4 154 7 0 21 0 9 28 0 4 11 0 4 28 0 1 34 1 3 20 1 0 107 3 0 82 1 0 46 1 0 11 1 0 10 chain 120442 chr8 146364022 + 101068117 101069662 THE1B-int 1605 + 0 1605 30893 42 2 3 142 0 3 202 0 64 58 0 1 158 0 1 8 2 0 13 3 2 123 4 0 203 0 2 511 0 1 15 7 6 14 3 0 12 2 0 21 chain 3976 chr8 146364022 + 101070776 101070822 MADE1 96 - 50 96 207746 46 chain 27120 chr8 146364022 + 101072736 101073154 L1PA13 3608 + 3090 3468 95869 42 36 6 21 2 1 113 2 0 63 1 0 60 2 0 48 10 6 18 chain 47436 chr8 146364022 + 101119920 101120601 L1PA10 4194 + 986 1662 60876 290 15 19 126 0 3 32 48 35 111 0 1 59 chain 475998 chr8 146364022 + 101120605 101126648 L1PA7 6471 + 0 6455 7853 37 18 19 187 0 1 8 0 7 145 2 0 69 1 0 26 10 11 67 3 0 141 0 1 6 1 0 17 10 15 24 0 1 194 2 19 24 6 7 159 0 2 23 0 4 21 15 38 175 0 2 345 0 6 67 17 12 164 0 4 163 5 6 75 0 6 222 0 2 109 3 1 239 5 21 177 18 19 204 0 1 313 1 0 107 0 3 275 0 2 29 0 1 584 0 2 604 1 0 299 0 315 82 0 1 100 0 2 62 0 1 61 0 1 78 1 0 107 2 0 133 chain 246955 chr8 146364022 + 101126739 101131278 L1PA11 4918 + 1259 4500 16396 48 0 1 100 4 1 61 978 0 67 63 51 225 1 2 400 38 44 266 31 26 32 1 0 137 1 0 89 0 1 292 5 10 139 0 1 413 5 21 162 3 4 199 325 0 280 1 0 62 2 1 79 2 0 16 1 0 11 chain 30574 chr8 146364022 + 101126957 101127332 MLT2A1 477 + 0 385 83254 33 0 5 104 0 1 25 5 9 208 chain 25395 chr8 146364022 + 101141384 101141723 THE1A 353 - 0 353 102709 137 8 9 97 2 1 24 2 1 30 0 15 39 chain 127244 chr8 146364022 + 101141728 101143283 THE1A-int 1579 - 5 1579 28755 103 0 2 57 0 1 612 0 15 596 18 19 169 chain 27243 chr8 146364022 + 101143285 101143635 THE1A 353 - 2 353 95454 137 6 8 96 2 1 109 chain 51343 chr8 146364022 + 101173618 101174266 PABL_A 660 + 0 660 58070 84 0 9 105 1 3 420 15 16 23 chain 9090 chr8 146364022 + 101197365 101197466 HY3 101 + 0 101 165117 101 chain 25784 chr8 146364022 + 101202259 101202559 AluSc8 310 + 3 303 100942 300 chain 87860 chr8 146364022 + 101212178 101213158 L1PA5 6144 - 1 982 40426 145 8 9 827 chain 27529 chr8 146364022 + 101215210 101215607 MLT2A1 477 + 0 472 94580 100 6 41 28 1 5 5 0 1 15 4 5 28 3 0 96 1 0 33 0 2 5 2 0 18 0 38 52 chain 426871 chr8 146364022 + 101215612 101221139 HERVL-int 5654 + 0 5651 9375 339 0 3 310 2 0 134 0 2 93 19 6 222 15 9 786 0 1 22 0 5 129 0 4 258 342 0 592 53 14 43 6 0 310 11 13 597 2 507 604 0 1 32 0 3 186 1 0 136 0 3 47 0 1 75 0 3 161 chain 34289 chr8 146364022 + 101221144 101221631 MLT2A1 477 + 4 477 77227 138 0 1 26 0 4 151 1 0 61 51 36 9 1 0 32 2 0 15 chain 5828 chr8 146364022 + 101227307 101227382 L1MA5A 2387 - 81 155 186879 11 1 0 63 chain 22823 chr8 146364022 + 101241353 101241680 AluY 311 + 0 311 116479 53 19 4 65 3 6 116 5 1 66 chain 5053 chr8 146364022 + 101303201 101303271 LTR33 499 - 408 475 194603 52 3 0 15 chain 6231 chr8 146364022 + 101306048 101306139 L1MEf 1413 - 893 981 183309 25 3 0 63 chain 114382 chr8 146364022 + 101328181 101329577 LTR12C 1709 - 5 1709 32972 263 0 1 212 0 4 106 12 328 222 3 1 312 6 0 51 6 1 203 chain 103382 chr8 146364022 + 101352070 101353572 L1PA7 6471 - 23 1281 35902 139 3 1 89 0 1 12 0 2 406 1 0 98 0 2 79 263 18 241 0 1 26 2 0 143 chain 120703 chr8 146364022 + 101363009 101364409 SVA_B 1603 + 44 1603 30796 566 0 37 52 4 0 14 0 37 102 1 0 7 1 0 20 4 0 17 1 94 184 0 2 427 chain 537805 chr8 146364022 + 101414048 101420173 L1PA5 6144 + 3 6141 3183 1262 5 6 162 1 0 167 1 0 431 0 1 281 1 0 118 0 4 1098 3 8 1756 0 4 237 0 1 602 chain 3029 chr8 146364022 + 101438739 101438774 HAL1-2a_MD 234 + 60 95 224422 35 chain 6658 chr8 146364022 + 101449398 101449501 MLT1C 463 + 59 157 180019 46 0 2 17 6 0 16 1 0 17 chain 7293 chr8 146364022 + 101465405 101465486 MER30B 195 - 14 95 175491 81 chain 8107 chr8 146364022 + 101466001 101466122 MER30 238 - 135 238 170451 38 18 0 65 chain 26921 chr8 146364022 + 101495862 101496215 THE1C 375 + 18 375 96550 7 2 0 110 0 4 64 0 3 144 1 0 25 chain 31001 chr8 146364022 + 101507851 101508255 LTR7 482 + 0 475 82510 69 9 46 109 9 41 42 0 2 166 chain 25727 chr8 146364022 + 101509452 101509812 MER4B 649 - 107 648 101186 8 0 16 24 0 1 67 1 0 5 1 2 63 1 16 34 3 157 124 5 0 24 chain 3006 chr8 146364022 + 101521196 101521231 MER34A 573 + 491 526 224937 35 chain 18188 chr8 146364022 + 101550517 101550758 MER2 342 + 37 278 132364 42 0 4 17 4 0 178 chain 120124 chr8 146364022 + 101557835 101559406 THE1D-int 1627 + 0 1620 31016 15 6 8 14 1 0 73 0 11 271 35 39 68 0 1 13 0 4 179 1 0 498 4 28 72 0 3 9 0 1 216 0 1 96 chain 14192 chr8 146364022 + 101572816 101573046 MER30 238 + 0 238 143907 25 32 27 60 4 17 109 chain 81611 chr8 146364022 + 101640079 101640978 L1PA4 6152 + 5252 6151 42923 899 chain 9390 chr8 146364022 + 101713210 101713651 MER82 654 + 93 633 163611 24 18 28 24 147 173 33 1 0 23 113 177 58 chain 3893 chr8 146364022 + 101715684 101715831 MER58A 224 + 62 208 208988 22 85 84 40 chain 86133 chr8 146364022 + 101719430 101720437 LTR13 1007 - 0 1007 41107 88 3 0 455 0 2 64 0 1 6 1 0 5 0 1 385 chain 5053 chr8 146364022 + 101753063 101753126 L1P 111 + 45 107 194600 57 1 0 5 chain 7776 chr8 146364022 + 101767323 101767416 HY3 101 - 1 94 172439 93 chain 35756 chr8 146364022 + 101777077 101778474 MER41A 554 + 0 546 75197 22 319 0 77 0 16 239 624 76 116 chain 25467 chr8 146364022 + 101779207 101779502 AluSg 306 + 12 306 102364 289 1 0 5 chain 24213 chr8 146364022 + 101779537 101779873 L1MA5A 2387 + 782 1109 109137 65 2 6 39 11 0 66 1 0 57 1 0 94 chain 7473 chr8 146364022 + 101799308 101799415 MLT1D 503 + 393 501 174324 56 5 6 46 chain 3889 chr8 146364022 + 101814139 101814187 MIRb 242 + 90 140 209032 43 0 2 5 chain 27588 chr8 146364022 + 101819754 101820128 THE1C 375 + 0 375 94389 85 0 1 93 0 2 5 0 1 14 10 7 167 chain 23309 chr8 146364022 + 101824050 101824749 MER51B 395 - 0 395 114155 138 367 39 8 1 0 107 4 10 27 7 26 40 chain 3615 chr8 146364022 + 101840508 101840552 MER102b 334 + 100 144 213424 44 chain 5425 chr8 146364022 + 101844097 101844174 MER4D 903 - 825 902 190751 42 1 2 8 1 0 25 chain 551220 chr8 146364022 + 101864549 101870684 L1PA4 6152 + 0 6143 1286 579 1 0 629 0 1 635 0 4 628 0 1 1519 0 3 2144 chain 148513 chr8 146364022 + 101903710 101905572 SVA_D 2077 - 6 1851 24816 93 0 4 499 0 98 339 77 2 6 1 0 82 45 5 9 1 0 16 2 0 157 43 0 33 0 3 95 0 40 364 chain 5726 chr8 146364022 + 101904641 101904718 SVA_D 2077 - 736 813 66812 77 chain 3346 chr8 146364022 + 101904807 101904852 SVA_D 2077 - 902 947 66812 45 chain 3579 chr8 146364022 + 101905037 101905077 SVA_D 2077 - 1276 1316 160042 40 chain 9471 chr8 146364022 + 101968772 101969361 LTR12C 1709 - 193 940 163212 22 12 11 11 52 33 30 243 500 35 58 21 16 1 0 15 41 0 53 chain 3677 chr8 146364022 + 101969190 101969235 LTR12C 1709 - 929 974 182877 45 chain 6665 chr8 146364022 + 101975174 101975271 HY1 111 - 10 111 179943 20 1 2 18 1 0 16 0 4 41 chain 26857 chr8 146364022 + 101977356 101977712 THE1D 372 - 0 372 96781 126 2 8 163 8 18 57 chain 79834 chr8 146364022 + 101980857 101981818 LTR13A 966 + 0 966 43669 68 0 4 55 0 1 228 0 1 26 1 0 583 chain 6123 chr8 146364022 + 101996057 101996127 L1PA5 6144 - 0 70 184241 70 chain 28238 chr8 146364022 + 102010049 102010415 LOR1b 457 - 45 415 92163 26 2 5 248 0 1 90 chain 50425 chr8 146364022 + 102031854 102032490 L1PA8 5853 - 0 639 58692 93 1 0 19 2 1 52 1 0 6 4 3 71 2 0 41 4 3 288 0 10 52 chain 6656 chr8 146364022 + 102054988 102055076 LTR37A 408 + 303 389 180042 32 2 0 54 chain 23671 chr8 146364022 + 102083745 102084033 AluSx4 309 + 8 301 112197 19 0 5 269 chain 7448 chr8 146364022 + 102135045 102135134 MLT1A 405 - 246 335 174452 89 chain 4132 chr8 146364022 + 102166099 102166148 MLT1J 494 + 96 145 205462 49 chain 23582 chr8 146364022 + 102166386 102166660 AluSp 311 - 8 282 112678 274 chain 29210 chr8 146364022 + 102174765 102175186 LTR7B 505 + 0 503 88000 90 0 3 15 0 10 6 0 6 54 7 69 17 8 10 85 1 0 21 0 1 54 14 13 49 chain 3080 chr8 146364022 + 102231044 102231078 L1MA5 2750 + 794 828 223318 34 chain 25576 chr8 146364022 + 102285545 102285842 LTR17 781 + 29 326 101841 297 chain 4974 chr8 146364022 + 102319595 102319655 U7 62 + 1 61 195424 60 chain 4599 chr8 146364022 + 102324802 102324852 MER58A 224 - 23 73 199646 50 chain 27430 chr8 146364022 + 102334297 102334659 THE1D 372 - 0 372 94878 33 0 1 149 20 29 160 chain 9555 chr8 146364022 + 102351531 102351822 L1MC1 2226 - 77 338 162808 14 1 0 6 10 1 7 1 0 7 82 64 5 1 0 53 2 0 8 10 13 51 4 3 29 chain 35126 chr8 146364022 + 102352824 102353214 L1PA5 6144 + 5748 6138 76023 390 chain 23421 chr8 146364022 + 102356976 102357287 AluSg4 309 + 5 308 113538 118 5 3 102 15 9 71 chain 43047 chr8 146364022 + 102368184 102368727 MER41A 554 + 0 554 65357 324 34 45 185 chain 28711 chr8 146364022 + 102390980 102391290 AluYg6 310 - 0 310 90290 310 chain 538852 chr8 146364022 + 102438008 102444107 L1PA4 6152 + 1 6152 3014 124 6 20 18 26 31 1484 2 0 32 1 0 484 1 0 6 0 1 328 0 13 216 0 1 228 0 14 182 0 3 754 0 1 885 0 1 566 0 3 756 chain 33311 chr8 146364022 + 102455915 102456284 L1PA3long 6157 + 5788 6157 78718 369 chain 40790 chr8 146364022 + 102474105 102475296 MER41A 554 - 0 541 68187 102 0 3 19 663 9 215 12 13 180 chain 3402 chr8 146364022 + 102492276 102492318 MLT1L 557 + 182 224 217037 42 chain 13680 chr8 146364022 + 102497930 102498140 MER30 238 + 0 238 145672 108 2 30 54 21 21 25 chain 2952 chr8 146364022 + 102534338 102534372 L1PA6 6164 - 3 37 226040 34 chain 13005 chr8 146364022 + 102562599 102562765 L1PA16 3655 - 79 245 148231 166 chain 15316 chr8 146364022 + 102598289 102598455 AluYb8 318 - 1 167 140437 166 chain 42817 chr8 146364022 + 102609582 102610058 L1PA4 6152 + 5665 6141 65629 476 chain 19222 chr8 146364022 + 102614033 102614330 L1PA8 5853 - 0 274 129466 93 1 0 13 18 0 5 3 2 51 1 0 10 1 0 13 0 2 5 1 0 51 2 0 29 chain 15037 chr8 146364022 + 102634940 102635225 L1PB1 5432 - 15 274 141214 4 1 0 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 15 6 6 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 chain 537430 chr8 146364022 + 102683261 102689431 L1PA4 6152 + 0 6132 3250 272 0 9 163 29 7 75 4 0 54 1 0 254 17 0 743 0 1 623 0 2 250 22 4 72 0 13 3467 4 3 120 chain 552533 chr8 146364022 + 102690318 102696321 L1PA2 6032 + 21 6032 1126 410 0 1 275 0 7 5318 chain 73291 chr8 146364022 + 102696998 102697791 L1PA2 6032 + 5228 6021 46890 793 chain 246144 chr8 146364022 + 102708997 102712101 L1PA8 5853 + 2662 5800 16437 225 0 1 41 0 4 590 0 1 56 5 0 33 0 1 20 2 10 181 0 2 81 0 4 77 0 1 81 5 6 263 6 8 232 0 1 43 0 1 188 0 6 114 2 1 75 0 4 79 8 17 455 1 0 46 2 0 55 0 1 12 13 11 51 2 1 19 1 0 40 chain 497083 chr8 146364022 + 102722208 102728712 L1PA7 6471 + 3 6470 7005 228 3 13 38 1 2 128 5 6 237 1 0 82 0 1 182 0 1 147 2 1 216 7 6 529 1 0 50 1 2 204 0 1 52 7 14 133 0 5 187 1 0 17 1 0 155 17 0 421 0 2 163 0 1 257 15 13 21 7 5 417 1 291 343 1 0 4 0 1 267 0 1 179 315 0 61 22 0 361 0 10 163 0 3 62 10 8 443 8 7 314 5 0 12 chain 28137 chr8 146364022 + 102726942 102727244 AluYb8 318 + 0 301 92517 132 1 0 169 chain 40477 chr8 146364022 + 102751619 102752161 MLT2A2 560 + 0 560 68624 81 5 8 105 1 4 195 9 20 76 0 1 70 chain 28411 chr8 146364022 + 102762162 102762530 THE1C 375 - 11 375 91532 15 1 0 227 8 7 40 3 1 74 chain 3417 chr8 146364022 + 102773927 102774333 MLT1J 494 + 34 450 216808 16 2 0 6 61 75 27 268 266 26 chain 41850 chr8 146364022 + 102871177 102871722 MLT2A2 560 + 0 560 66828 194 1 4 199 15 26 66 0 1 70 chain 4328 chr8 146364022 + 102892022 102892071 LTR12C 1709 - 641 690 202855 49 chain 551041 chr8 146364022 + 102903728 102909757 L1PA2 6032 + 1 6032 1301 2577 0 2 3452 chain 27780 chr8 146364022 + 102932503 102932957 L1PA16 3655 + 3175 3589 93765 23 5 0 3 30 0 85 23 21 50 16 15 168 0 1 34 5 2 12 chain 70536 chr8 146364022 + 102977168 102978000 L1PA7 6471 + 5636 6465 48142 823 3 0 6 chain 9042 chr8 146364022 + 102978510 102978609 L1PA4 6152 + 5792 5891 165362 99 chain 23940 chr8 146364022 + 102978610 102978870 L1PA4 6152 + 5891 6151 110690 260 chain 3479 chr8 146364022 + 102986440 102986487 MADE1 96 - 33 96 215681 18 0 16 29 chain 26274 chr8 146364022 + 103011398 103011886 L1PB1 5432 + 4982 5423 98921 121 1 2 9 19 0 24 2 1 7 1 0 12 5 1 9 2 0 52 2 1 11 7 6 43 1 0 15 1 0 4 2 0 9 6 0 17 3 1 5 1 0 14 2 0 24 1 0 24 1 0 10 2 1 13 1 0 5 chain 539153 chr8 146364022 + 103012126 103018268 L1PA4 6152 + 0 6152 2960 236 11 21 204 19 14 208 0 3 2485 3 1 515 0 2 1615 0 4 590 1 0 104 2 0 36 0 1 113 chain 3215 chr8 146364022 + 103034170 103034206 MIR 256 + 101 137 220650 36 chain 30163 chr8 146364022 + 103062108 103062423 AluYb8 318 + 0 315 84295 315 chain 2983 chr8 146364022 + 103075067 103075098 MLT1H2 457 - 341 372 225425 31 chain 7607 chr8 146364022 + 103077945 103078029 AluJr 308 + 21 110 173498 26 0 5 58 chain 4478 chr8 146364022 + 103086378 103086457 Arthur1B 1073 + 454 528 201039 5 3 0 45 1 0 6 6 5 13 chain 39422 chr8 146364022 + 103098907 103099459 MER41A 554 + 0 554 70127 182 9 7 13 0 1 22 1 3 95 5 4 102 5 6 106 0 1 12 chain 161920 chr8 146364022 + 103101844 103104165 MER41-int 2638 + 363 2636 23077 56 6 1 31 9 9 110 15 6 9 1 0 6 0 4 47 0 1 5 17 11 19 1 0 131 2 16 156 5 6 231 0 1 37 17 3 61 7 3 21 4 7 155 0 1 140 8 0 23 1 0 26 5 7 141 13 7 22 4 2 152 8 0 51 1 4 144 0 2 122 18 0 13 0 2 79 9 10 182 chain 39538 chr8 146364022 + 103108608 103109148 MER51A 677 + 0 677 69975 94 0 1 81 0 135 215 42 40 48 0 3 60 chain 6981 chr8 146364022 + 103109150 103109250 MLT1B 390 - 265 364 177600 75 5 4 20 chain 2797 chr8 146364022 + 103115672 103115738 MIR 256 - 153 221 228766 18 25 27 23 chain 17042 chr8 146364022 + 103128304 103128496 L1PA5 6144 + 5952 6144 135487 192 chain 15327 chr8 146364022 + 103139275 103139498 L1PA8 5853 - 5 210 140401 88 1 0 19 2 1 51 7 0 10 1 0 13 0 1 13 9 0 9 chain 556839 chr8 146364022 + 103144983 103151132 L1PA3long 6157 + 4 6157 627 692 0 1 2482 0 1 494 1 2 944 0 4 1200 1 0 260 2 0 73 chain 12864 chr8 146364022 + 103184794 103185186 MSTA 426 - 12 426 148779 88 9 12 34 172 190 63 14 15 12 chain 28561 chr8 146364022 + 103197448 103197754 AluYg6 310 - 4 310 90916 306 chain 554216 chr8 146364022 + 103329170 103335319 L1PA3long 6157 + 0 6149 923 218 10 1 150 0 2 328 0 1 345 0 1 1067 0 3 412 2 0 1324 0 3 2159 0 1 134 chain 3066 chr8 146364022 + 103390902 103390938 MADE1 96 - 60 96 223642 36 chain 7835 chr8 146364022 + 103393611 103393744 THE1D 372 - 215 340 172100 25 13 14 70 9 0 16 chain 28731 chr8 146364022 + 103404002 103404552 MER41A 554 + 56 466 90203 31 5 6 233 45 0 12 101 5 58 1 0 27 2 3 35 chain 2916 chr8 146364022 + 103436345 103436377 MIR 256 - 150 182 226754 32 chain 22496 chr8 146364022 + 103441705 103441974 AluSp 311 - 29 299 118043 73 0 1 196 chain 12683 chr8 146364022 + 103465431 103465616 L1MA5 2750 - 127 303 149515 61 1 0 23 3 1 31 0 1 21 7 0 38 chain 121476 chr8 146364022 + 103496875 103498303 LTR12C 1709 - 0 1709 30542 481 0 4 106 3 1 5 1 0 98 0 278 298 1 2 140 0 1 295 chain 24802 chr8 146364022 + 103499318 103499602 AluSp 311 - 15 299 105880 284 chain 10604 chr8 146364022 + 103518820 103518956 MLT1A1 405 - 38 173 157808 32 1 0 103 chain 10015 chr8 146364022 + 103530787 103530990 L1PB1 5432 + 5239 5422 160508 41 1 0 9 30 19 18 3 1 5 1 0 14 2 0 24 1 0 23 2 1 10 1 0 18 chain 24408 chr8 146364022 + 103592623 103592908 AluSg7 307 - 12 298 108038 163 0 1 122 chain 4664 chr8 146364022 + 103603620 103603680 FLAM_A 137 - 5 65 198918 60 chain 21365 chr8 146364022 + 103626743 103627039 L1PA8 5853 + 5564 5853 122633 45 2 0 73 1 0 11 1 0 7 1 0 32 13 12 19 1 0 90 chain 37659 chr8 146364022 + 103632068 103632520 L1PA7 6471 + 6016 6469 72602 281 1 2 5 1 0 17 1 0 135 0 2 11 chain 14758 chr8 146364022 + 103636989 103637294 L1MB3 1562 - 18 297 142073 21 1 0 32 35 36 16 40 14 4 1 0 66 3 4 86 chain 3681 chr8 146364022 + 103715677 103715730 LOR1a 498 + 11 65 212209 36 1 2 16 chain 28676 chr8 146364022 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+ 103946927 103947272 THE1D 372 - 38 372 116620 93 3 9 38 26 28 89 20 1 76 chain 3334 chr8 146364022 + 103950161 103950210 MER39B 650 + 23 84 218342 12 1 13 36 chain 4361 chr8 146364022 + 103954832 103954925 MER21C 908 - 117 208 202442 22 14 12 31 1 3 12 2 0 11 chain 5895 chr8 146364022 + 103957090 103957164 MER53 195 + 0 74 186230 74 chain 6239 chr8 146364022 + 103962699 103962792 HY4 93 - 3 93 183253 13 8 5 72 chain 89963 chr8 146364022 + 103969302 103970361 L1PA5 6144 - 9 1075 39664 268 7 11 500 1 2 44 1 3 238 chain 11214 chr8 146364022 + 104008746 104008878 L1PA5 6144 - 13 143 155371 5 1 0 84 1 0 41 chain 15597 chr8 146364022 + 104010546 104010761 L1MA4 2864 - 417 629 139593 107 9 6 99 chain 36439 chr8 146364022 + 104013533 104013976 LTR2 463 + 1 463 74316 161 10 29 272 chain 14762 chr8 146364022 + 104014715 104014891 HERVH-int 3825 + 3649 3825 142062 176 chain 3289 chr8 146364022 + 104069522 104069583 MER51A 677 - 451 501 219205 25 12 1 24 chain 73204 chr8 146364022 + 104105137 104106638 Tigger1 2417 - 805 1765 46922 232 1 0 161 4 7 30 544 0 207 1 0 198 1 2 80 0 1 42 chain 28967 chr8 146364022 + 104134908 104135301 MER51B 395 + 0 395 89148 39 13 0 206 1 0 20 0 15 55 3 4 56 chain 27337 chr8 146364022 + 104138070 104138438 THE1C 375 - 0 375 95151 25 1 0 273 6 13 15 1 2 47 chain 23758 chr8 146364022 + 104162183 104162543 THE1B 368 - 0 368 111720 56 8 7 50 47 57 29 1 0 169 chain 2796 chr8 146364022 + 104167661 104167692 LTR16A 446 - 172 203 228799 31 chain 32670 chr8 146364022 + 104172857 104173256 MLT2A1 477 - 77 477 79731 15 4 0 96 1 2 114 1 5 168 chain 52970 chr8 146364022 + 104234019 104234776 MER4E 760 - 0 760 57035 24 0 2 200 22 1 44 0 11 105 0 2 21 18 22 57 9 11 84 22 25 151 chain 53497 chr8 146364022 + 104236416 104237196 MER4E 760 - 0 760 56682 84 0 1 35 13 11 95 23 2 84 3 2 63 0 4 10 1 3 98 4 0 42 6 3 28 8 10 20 11 14 114 1 2 11 2 0 24 chain 6842 chr8 146364022 + 104251147 104251238 MER5B 177 - 16 106 178646 59 1 0 31 chain 4106 chr8 146364022 + 104299808 104299894 L1MA9 1812 - 162 245 205830 16 23 21 34 1 0 12 chain 157715 chr8 146364022 + 104303799 104305527 L1PA3long 6157 + 4415 6144 23632 75 1 0 180 0 1 807 0 1 665 chain 317261 chr8 146364022 + 104378042 104381838 L1PA7 6471 - 19 3827 12713 141 1 3 682 6 5 629 3 1 42 1 0 585 12 10 66 0 1 17 0 1 255 5 0 19 0 18 371 1 0 64 0 5 475 1 0 297 2 0 121 chain 19459 chr8 146364022 + 104393335 104393562 L1PA6 6164 - 8 236 128790 159 0 1 68 chain 8621 chr8 146364022 + 104397200 104397295 U6 107 + 12 107 167627 95 chain 214764 chr8 146364022 + 104397296 104400172 L1PA7 6471 + 3889 6459 18180 200 0 1 121 0 8 296 3 0 1103 1 4 180 312 0 525 12 9 123 chain 4242 chr8 146364022 + 104446746 104446855 L1MC4a 1092 - 441 549 203980 47 45 43 5 0 1 12 chain 11845 chr8 146364022 + 104455973 104456132 MER2 342 - 103 260 152848 119 6 4 34 chain 61099 chr8 146364022 + 104475115 104476194 MER4E 760 - 0 760 52291 23 0 2 121 1 0 26 307 0 58 13 0 268 5 4 234 0 1 23 chain 16222 chr8 146364022 + 104530498 104530707 MER30 238 - 5 238 137688 40 3 0 66 0 27 100 chain 9136 chr8 146364022 + 104533167 104533269 L1PA3long 6157 - 262 364 164883 102 chain 23037 chr8 146364022 + 104533269 104533523 L1PA3long 6157 + 5903 6157 115466 254 chain 165286 chr8 146364022 + 104539621 104541523 L1PA5 6144 - 0 1903 22616 29 0 1 110 8 1 15 0 7 1557 0 1 129 1 0 53 chain 38861 chr8 146364022 + 104541523 104541985 L1P1 4361 - 3887 4349 70694 462 chain 3402 chr8 146364022 + 104545730 104545766 Cheshire 1285 + 37 73 217053 36 chain 8473 chr8 146364022 + 104551035 104551150 L1PB1 5432 - 145 257 168438 6 1 0 44 1 0 16 2 1 45 chain 388231 chr8 146364022 + 104561318 104565830 L1PA5 6144 + 1599 6139 10506 841 1 16 410 0 1 20 1 0 65 1 0 5 0 2 217 1 0 232 0 8 81 5 6 179 1 0 616 1 0 528 0 3 348 0 4 817 1 0 141 chain 39879 chr8 146364022 + 104576569 104577106 MLT2A2 560 - 0 559 69490 6 0 4 137 0 11 222 12 11 9 2 0 70 0 2 21 1 3 50 0 6 7 chain 36870 chr8 146364022 + 104584199 104584697 LTR12_ 688 - 0 618 73696 42 1 0 113 0 103 20 1 0 67 0 2 197 1 2 27 2 18 27 chain 17522 chr8 146364022 + 104589619 104589847 L1PA7 6471 + 6235 6465 134201 78 2 7 139 3 0 6 chain 59388 chr8 146364022 + 104597309 104598117 L1PA8 5853 + 5033 5848 53184 59 4 7 192 1 8 265 1 0 46 6 8 60 2 1 8 2 1 52 2 1 10 18 17 80 chain 6760 chr8 146364022 + 104599202 104599296 L1MA1 4479 + 1048 1143 179242 50 4 5 40 chain 548159 chr8 146364022 + 104615224 104621246 L1PA2 6032 - 0 6032 1684 4480 0 1 610 1 3 234 0 7 215 0 1 225 1 0 256 chain 51877 chr8 146364022 + 104633351 104633940 LTR10C 591 - 0 591 57696 79 0 2 510 chain 77898 chr8 146364022 + 104638848 104639913 MER11A 1151 - 0 1151 44568 60 7 6 87 7 6 25 1 0 26 2 0 48 1 33 16 0 28 69 0 4 37 3 4 11 6 9 108 1 2 267 0 11 60 0 4 30 1 0 113 0 8 79 chain 5503 chr8 146364022 + 104649141 104649206 MER101B 537 - 152 217 190021 65 chain 26667 chr8 146364022 + 104658088 104658491 LTR7 482 - 7 480 97430 179 40 72 109 8 46 67 chain 10208 chr8 146364022 + 104674223 104674369 MER30 238 - 2 164 159576 46 4 0 59 6 26 31 chain 165175 chr8 146364022 + 104675532 104677510 L1PA6 6164 + 4171 6161 22633 197 0 4 277 1 0 242 0 4 96 0 1 225 1 3 170 1 3 768 chain 123939 chr8 146364022 + 104681600 104683159 THE1B-int 1605 - 6 1590 29721 339 2 0 58 0 1 231 1 2 292 1 0 209 0 2 8 0 25 341 0 1 4 9 7 64 chain 10943 chr8 146364022 + 104701777 104701925 L1M1 2793 - 109 254 156428 11 1 0 44 1 0 76 1 0 14 chain 110713 chr8 146364022 + 104750540 104751762 L1PA5 6144 + 4913 6139 34025 384 0 4 838 chain 18214 chr8 146364022 + 104759323 104759527 L1PA3long 6157 - 1 205 132302 204 chain 16688 chr8 146364022 + 104763090 104763387 THE1B 368 + 1 322 136442 39 0 15 60 0 11 7 11 0 39 1 0 26 46 56 68 chain 413076 chr8 146364022 + 104763395 104768482 L1PA4 6152 - 220 5300 9720 771 3 0 617 0 18 289 1 0 615 2 0 92 0 9 1319 0 2 44 2 1 705 5 10 145 130 121 215 25 0 107 chain 2676 chr8 146364022 + 104785388 104785529 L1ME2z 1083 + 165 393 230464 28 13 16 10 36 25 14 25 120 15 chain 30940 chr8 146364022 + 104791785 104792141 L1PA5 6144 + 5788 6144 82615 356 chain 10238 chr8 146364022 + 104792175 104792296 L1MA4 2864 - 1321 1442 159429 121 chain 545743 chr8 146364022 + 104795497 104801491 L1PA2 6032 - 0 5998 1983 290 0 3 2175 1 0 7 0 1 971 5 0 7 1 6 1020 0 1 1295 1 0 183 0 1 38 chain 400725 chr8 146364022 + 104803111 104807812 L1PA5 6144 + 1441 6138 10066 193 1 0 97 0 1 170 0 1 1299 12 2 529 0 1 136 0 1 350 6 5 1068 1 0 446 0 1 65 0 1 231 0 3 97 chain 43731 chr8 146364022 + 104825640 104826156 L1PA5 6144 - 8 524 64529 142 1 2 37 3 2 333 chain 20151 chr8 146364022 + 104841363 104841790 L1PA15 4387 + 3907 4351 126672 25 1 0 74 6 7 91 1 0 9 0 26 63 4 0 15 1 0 11 110 107 16 chain 45572 chr8 146364022 + 104849613 104850115 L1PA4 6152 - 11 525 62438 140 0 12 362 chain 75343 chr8 146364022 + 104888697 104890179 L1PB1 5432 - 10 1672 45850 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 7 11 8 0 1 23 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 130 11 144 5 13 42 0 4 94 2 1 179 3 0 114 26 345 63 201 199 10 0 1 4 1 0 130 chain 16317 chr8 146364022 + 104890179 104890533 THE1D 372 + 0 357 137446 55 58 57 53 65 69 123 chain 125323 chr8 146364022 + 104910953 104912378 L1PA5 6144 - 0 1430 29296 196 0 2 481 1 0 165 1 5 581 chain 6764 chr8 146364022 + 104912379 104912452 L1P2 5180 + 1875 1948 179214 73 chain 3675 chr8 146364022 + 104914169 104914223 MLT1E1A 663 - 39 90 212316 21 1 0 4 2 0 26 chain 21823 chr8 146364022 + 104950456 104950785 THE1B 368 - 12 368 120931 37 32 64 63 5 1 22 1 0 169 chain 111392 chr8 146364022 + 104950792 104952361 THE1B-int 1605 - 8 1604 33838 61 1 2 16 0 5 19 15 1 150 0 10 381 0 3 5 10 7 113 3 5 93 34 31 98 9 7 134 1 26 314 0 3 53 0 1 14 24 23 21 chain 511442 chr8 146364022 + 104963546 104969997 L1PA7 6471 + 5 6469 6032 113 6 7 115 7 17 150 2 1 344 1 0 148 8 3 325 3 4 109 6 5 387 0 8 11 1 0 6 0 1 9 0 3 80 0 1 87 0 1 534 3 2 289 2 0 6 0 2 170 0 1 10 0 1 548 1 0 42 7 11 196 4 5 68 1 0 903 1 0 128 9 11 754 1 0 88 0 2 359 8 0 66 0 1 223 0 8 7 14 6 73 3 0 15 chain 24192 chr8 146364022 + 104972072 104972351 L1P1 4361 + 2972 3250 109263 231 2 1 46 chain 24912 chr8 146364022 + 104996130 104996424 AluY 311 + 11 299 105262 272 4 0 6 2 0 10 chain 36073 chr8 146364022 + 104996427 104997054 L1MA2 4263 + 3406 4042 74795 52 0 9 37 4 0 62 1 0 16 18 14 57 10 9 82 1 0 4 0 6 48 9 6 82 0 1 32 54 52 40 0 9 18 chain 21166 chr8 146364022 + 105000691 105000977 AluSp 311 - 16 301 123322 153 18 17 115 chain 24631 chr8 146364022 + 105018495 105018790 AluSp 311 + 0 297 106822 65 1 0 212 0 3 17 chain 8243 chr8 146364022 + 105044626 105044746 MER85 139 - 0 131 169718 22 1 0 7 6 18 84 chain 349258 chr8 146364022 + 105069798 105073624 L1PA3long 6157 - 0 3827 11630 901 0 1 1962 0 1 738 1 0 224 chain 10677 chr8 146364022 + 105081322 105081515 MER47A 366 + 100 302 157500 30 0 5 84 1 0 9 14 19 12 5 0 7 7 12 24 chain 4001 chr8 146364022 + 105146313 105146386 HSMAR2 1300 - 9 81 207377 40 3 0 5 7 9 18 chain 163768 chr8 146364022 + 105150008 105152413 L1MA3 4352 - 125 2536 22837 50 12 15 50 3 0 6 98 71 274 20 38 143 11 14 161 37 42 91 0 4 14 1 0 247 0 1 307 17 20 136 0 1 30 5 1 165 1 0 30 5 4 471 0 5 20 chain 134536 chr8 146364022 + 105170158 105171716 L1PA6 6164 - 15 1591 27103 132 0 15 684 0 3 742 chain 266271 chr8 146364022 + 105179233 105183037 L1PB2 3958 - 128 3866 15378 55 2 1 95 1 0 61 1 0 26 72 15 23 10 9 93 4 0 14 2 0 9 0 2 5 2 0 13 9 13 22 5 0 13 1 0 47 8 6 232 5 9 23 0 5 115 1 0 212 0 2 150 0 2 77 2 0 189 0 10 48 3 11 419 8 1 40 1 0 155 1 2 20 48 19 50 0 1 210 0 4 237 0 7 66 1 6 298 9 6 201 8 9 15 10 20 207 20 17 34 1 0 4 1 0 37 2 0 30 9 4 12 chain 25899 chr8 146364022 + 105230624 105231062 MER1A 529 - 1 465 100442 28 43 45 204 0 1 27 34 65 49 5 0 31 3 0 14 chain 36017 chr8 146364022 + 105250241 105250692 L1PA8 5853 + 5408 5853 74874 156 1 0 26 0 1 17 2 0 70 2 1 10 1 0 51 2 1 19 1 0 93 chain 5059 chr8 146364022 + 105283198 105283262 MLT2B1 522 - 458 522 194550 64 chain 51701 chr8 146364022 + 105296545 105297316 MER4D1 891 - 126 891 57816 105 12 0 56 7 14 160 1 0 15 2 0 47 2 0 123 29 42 80 20 11 112 chain 30646 chr8 146364022 + 105298139 105298558 LTR7B 505 + 0 494 83130 108 0 10 57 0 38 12 3 27 26 0 2 41 0 2 39 1 0 26 0 1 52 18 17 36 chain 305269 chr8 146364022 + 105298569 105302200 HERVH-int 3825 + 0 3825 13202 46 1 0 4 0 1 416 61 0 65 5 0 17 1 0 21 1 0 10 1 0 24 30 0 15 0 37 42 1 0 58 0 1 6 0 2 13 0 3 600 0 10 294 4 31 628 0 2 774 0 210 268 0 2 225 chain 26004 chr8 146364022 + 105303907 105304321 LTR7B 505 + 0 488 99998 39 2 0 66 0 10 69 35 11 17 0 88 22 0 2 41 1 0 23 0 1 46 0 1 5 14 13 34 chain 4140 chr8 146364022 + 105308179 105308227 MER104 178 + 85 133 205363 48 chain 519032 chr8 146364022 + 105320824 105326950 L1PA6 6164 + 2 6162 5266 235 0 2 278 0 2 48 1 0 238 1 18 714 0 10 778 0 1 869 1 2 103 0 1 38 0 3 304 18 14 43 3 0 377 1 0 288 0 4 126 1 0 14 0 4 163 1 0 352 12 13 6 1 0 1112 chain 42426 chr8 146364022 + 105375553 105376256 LTR12D 1347 - 0 1011 66109 155 27 192 121 1 0 4 51 52 37 2 1 17 24 0 51 1 18 115 0 150 14 1 2 82 chain 13868 chr8 146364022 + 105389119 105389388 MER1B 344 - 0 281 145011 56 49 53 77 3 6 27 5 6 28 6 10 18 chain 13405 chr8 146364022 + 105389432 105389585 L1PA4 6152 + 5994 6152 146689 147 0 5 6 chain 13786 chr8 146364022 + 105406049 105406325 L1PB1 5432 - 5 256 145315 5 2 0 18 1 0 13 1 0 21 1 0 24 27 22 16 24 12 17 5 4 38 1 0 16 2 1 44 chain 61212 chr8 146364022 + 105414993 105415721 LTR17 781 + 0 768 52249 160 0 2 165 1 0 21 0 24 123 0 15 258 chain 50994 chr8 146364022 + 105456954 105457741 L1MA2 4263 + 3379 4140 58317 187 1 0 18 5 1 77 1 0 132 15 12 118 1 0 25 22 0 7 1 19 82 14 7 41 1 0 9 4 2 8 3 1 15 chain 6223 chr8 146364022 + 105467283 105467351 L1PA8A 6298 + 6223 6291 183386 68 chain 11364 chr8 146364022 + 105477832 105478014 MER30 238 - 0 238 154839 18 0 1 8 0 21 39 16 43 82 4 11 15 chain 195058 chr8 146364022 + 105537920 105540063 L1PA3long 6157 + 4001 6152 19580 7 0 4 281 0 2 20 1 0 940 1 0 56 0 2 822 0 2 15 chain 18291 chr8 146364022 + 105560907 105561169 AluSp 311 + 11 287 132098 36 1 7 149 27 33 44 0 2 5 chain 85338 chr8 146364022 + 105570473 105571829 L1PB1 5432 + 4109 5422 41402 4 0 1 44 1 0 5 1 2 41 5 1 400 13 14 11 12 8 65 2 3 123 1 0 160 0 3 109 13 11 24 8 6 12 2 0 3 2 0 9 2 0 41 1 0 10 1 0 12 8 7 43 1 0 15 1 0 4 23 12 14 37 26 18 1 0 21 1 0 13 1 0 18 chain 16818 chr8 146364022 + 105579404 105579755 THE1A 353 - 0 353 136070 74 0 2 85 131 130 37 0 1 24 chain 10860 chr8 146364022 + 105583976 105584136 MER1B 344 + 159 322 156744 105 21 24 34 chain 31817 chr8 146364022 + 105602556 105602996 LTR12F 595 - 0 595 81132 5 0 1 77 1 0 70 0 2 19 11 21 10 1 0 22 3 4 149 0 143 72 chain 22054 chr8 146364022 + 105618665 105618990 THE1B 368 + 0 328 120003 169 1 0 21 3 5 4 0 1 10 0 4 16 1 0 12 2 1 60 2 0 7 1 2 16 chain 117884 chr8 146364022 + 105619029 105620551 THE1B-int 1605 + 0 1599 31839 13 4 3 257 0 6 116 0 64 229 15 16 11 3 0 41 12 13 220 0 5 558 0 4 43 chain 146561 chr8 146364022 + 105639073 105640668 L1PA3long 6157 - 0 1597 25080 845 0 2 750 chain 3764 chr8 146364022 + 105644604 105644751 LTR12C 1709 - 998 1055 210904 8 49 0 20 41 0 29 chain 34318 chr8 146364022 + 105649408 105649947 MLT2A2 560 - 0 559 77182 57 2 1 11 0 1 38 34 52 74 1 0 117 39 42 166 chain 20696 chr8 146364022 + 105658343 105658723 MSTA 426 + 0 421 124982 106 31 0 8 6 63 23 9 18 18 2 0 64 37 45 76 chain 6116 chr8 146364022 + 105679918 105679990 MER50B 698 - 626 698 184307 72 chain 6063 chr8 146364022 + 105697277 105697349 MSTD 398 - 305 377 184714 72 chain 6511 chr8 146364022 + 105705349 105705430 L1PA8 5853 - 209 288 181153 35 2 0 44 chain 12734 chr8 146364022 + 105705430 105705625 L1PA8 5853 + 5651 5843 149311 27 16 9 22 0 6 20 7 6 19 1 0 83 chain 22319 chr8 146364022 + 105714398 105714749 THE1D 372 + 1 372 118832 52 12 22 16 5 0 75 6 10 14 0 6 29 15 21 90 2 1 35 chain 35604 chr8 146364022 + 105748635 105749071 MER41A 554 + 0 441 75407 104 1 0 76 3 9 252 chain 562887 chr8 146364022 + 105752079 105758101 L1HS 6032 - 0 6032 270 848 1 5 1060 1 0 3405 0 7 707 chain 24600 chr8 146364022 + 105763799 105764093 AluSp 311 - 6 300 106996 294 chain 3441 chr8 146364022 + 105771957 105771998 L1MB5 1630 - 250 293 216353 27 0 2 14 chain 323 chr8 146364022 + 105774092 105774137 LTR56 451 - 177 222 180318 45 chain 42565 chr8 146364022 + 105774137 105776012 MER41A 554 - 0 554 65944 40 0 1 35 5 10 167 1327 0 301 chain 18553 chr8 146364022 + 105774452 105774690 MER41A 554 - 322 554 131351 32 12 6 194 chain 5947 chr8 146364022 + 105774812 105774913 L1MA3 4352 - 0 94 185707 22 6 2 14 1 0 26 1 0 6 1 0 24 chain 373 chr8 146364022 + 105774963 105775015 LTR56 451 - 386 438 180318 52 chain 14992 chr8 146364022 + 105775464 105775648 MER41A 554 - 0 184 141345 184 chain 25906 chr8 146364022 + 105777795 105778099 AluYk4 311 + 0 304 100408 110 0 2 139 2 0 53 chain 24677 chr8 146364022 + 105778101 105778493 L1PA15 4387 + 3914 4295 106573 18 1 0 113 3 5 54 2 1 19 7 6 55 1 0 22 5 0 10 1 0 40 16 13 25 chain 18011 chr8 146364022 + 105860044 105860304 L1PREC2 3366 - 2893 3146 132834 62 8 6 113 2 1 34 2 0 12 1 0 13 1 0 12 chain 93057 chr8 146364022 + 105874123 105875458 THE1D-int 1627 + 0 1627 38642 38 1 0 84 0 1 295 118 402 314 8 9 158 0 1 69 0 1 113 8 13 129 chain 25001 chr8 146364022 + 105882253 105882513 AluYa5 310 - 12 272 104785 260 chain 411341 chr8 146364022 + 105923495 105928687 L1PA8A 6298 - 8 5420 9766 33 0 2 75 2 3 65 1 5 110 0 5 422 0 2 77 0 3 139 1 2 34 0 1 1355 0 1 84 0 1 121 5 6 46 1 0 12 0 4 138 9 8 97 0 2 457 8 202 69 3 5 140 1 0 54 14 0 119 0 2 34 0 1 296 0 1 21 0 4 112 0 2 407 9 4 267 4 13 65 5 6 7 1 0 6 18 17 248 chain 448663 chr8 146364022 + 105971290 105977058 L1HS 6032 - 379 6021 8798 96 2 0 1186 16 16 125 10 14 309 16 4 342 0 1 418 0 3 1332 12 13 153 0 1 5 6 5 294 3 2 321 0 1 57 32 33 65 1 0 7 0 1 71 138 10 62 1 8 123 0 1 316 27 26 65 14 13 143 chain 95997 chr8 146364022 + 106011340 106012501 L1PA8A 6298 + 5114 6290 37823 63 0 5 307 0 6 46 0 3 38 1 0 32 0 1 242 0 3 332 2 0 98 chain 4743 chr8 146364022 + 106015228 106015307 MADE1 96 - 1 96 197988 36 11 27 32 chain 21906 chr8 146364022 + 106049111 106049379 L1PA6 6164 - 13 281 120599 268 chain 202699 chr8 146364022 + 106049384 106051911 L1PA7 6471 + 3963 6465 19013 194 5 0 353 6 0 52 0 5 21 9 0 33 1 0 50 0 6 244 15 9 697 0 1 83 0 1 254 4 5 149 1 0 6 11 0 80 1 2 99 2 0 6 1 2 150 chain 57756 chr8 146364022 + 106062264 106062917 L1PA5 6144 + 5488 6141 54107 653 chain 26060 chr8 146364022 + 106068468 106068825 THE1B 368 + 9 368 99792 167 1 0 9 0 2 11 0 3 28 2 1 9 5 4 125 chain 122483 chr8 146364022 + 106069446 106070914 L1PA6 6164 + 4693 6159 30227 619 1 5 808 10 4 30 chain 10315 chr8 146364022 + 106136812 106136936 MER44A 345 - 31 155 159070 124 chain 21234 chr8 146364022 + 106137598 106137887 AluY 311 + 1 303 123077 35 0 25 63 27 15 164 chain 30580 chr8 146364022 + 106172852 106173242 L1PA8 5853 - 0 389 83241 40 0 4 49 1 0 19 2 1 132 2 0 46 1 0 98 chain 29693 chr8 146364022 + 106181410 106181729 AluYb8 318 + 0 318 85858 222 1 0 96 chain 21462 chr8 146364022 + 106222097 106222459 L1PA11 4918 + 4228 4567 122291 103 3 0 56 11 10 10 3 2 6 1 0 57 2 0 16 1 0 20 4 0 12 23 14 20 1 0 13 chain 22746 chr8 146364022 + 106246547 106246907 THE1C 375 + 0 364 116843 86 4 0 100 27 28 38 0 1 19 1 0 5 5 11 48 2 3 25 chain 19732 chr8 146364022 + 106273222 106273517 L1PA11 4918 - 2525 2818 128008 15 11 15 112 25 19 36 1 0 46 0 1 49 chain 95563 chr8 146364022 + 106320083 106321141 L1PA3long 6157 - 1 1064 37941 395 2 3 450 0 4 211 chain 46824 chr8 146364022 + 106321141 106321650 L1PA3long 6157 + 4591 5100 61202 509 chain 96632 chr8 146364022 + 106372704 106373763 L1PA3long 6157 - 1 1062 37661 844 0 2 215 chain 23637 chr8 146364022 + 106378752 106379009 L1PA2 6032 - 6 263 112375 257 chain 69079 chr8 146364022 + 106379768 106380535 L1P1 4361 - 33 798 48773 23 1 0 155 1 0 587 chain 31515 chr8 146364022 + 106393163 106393571 L1PA7 6471 - 8 394 81621 306 23 1 79 chain 106457 chr8 146364022 + 106398615 106400081 LTR12C 1709 - 0 1709 35132 131 0 8 26 0 102 214 20 13 52 18 1 44 12 9 171 1 0 101 1 0 11 0 119 102 0 1 131 7 9 73 10 53 36 9 0 10 9 14 160 0 1 117 chain 9988 chr8 146364022 + 106410698 106410878 MER1B 344 - 2 186 160641 23 0 1 32 46 49 79 chain 20740 chr8 146364022 + 106412490 106412719 L1PA2 6032 - 0 229 124814 229 chain 96148 chr8 146364022 + 106417510 106418575 L1PA4 6152 - 1 1071 37781 154 0 1 694 0 4 217 chain 16171 chr8 146364022 + 106418576 106418763 L1PA4 6152 + 4873 5070 137838 62 0 10 125 chain 23018 chr8 146364022 + 106518962 106519241 AluY 311 + 29 308 115537 94 1 0 9 0 1 175 chain 175089 chr8 146364022 + 106631775 106633798 L1PA5 6144 - 12 2044 21450 166 0 2 868 0 1 410 1 4 57 1 0 146 0 2 38 0 1 81 0 1 255 chain 310270 chr8 146364022 + 106659607 106663151 L1PA5 6144 - 0 3557 12991 1040 0 1 805 1 0 227 2 1 610 0 7 21 11 9 749 0 9 78 chain 29224 chr8 146364022 + 106670534 106670843 AluYf4 310 + 0 309 87939 309 chain 29654 chr8 146364022 + 106703459 106703775 AluYb8 318 - 2 318 86053 316 chain 5181 chr8 146364022 + 106734089 106734195 MER33 330 + 13 118 193219 46 29 28 31 chain 5469 chr8 146364022 + 106793552 106793628 MIR 256 + 178 253 190309 8 1 0 67 chain 550211 chr8 146364022 + 106801326 106807460 L1PA3long 6157 - 11 6157 1417 247 0 1 1042 4 0 59 4 0 443 0 4 405 0 1 755 0 1 473 0 5 1290 0 9 219 0 3 251 4 0 938 chain 20965 chr8 146364022 + 106825247 106825574 THE1D 372 - 0 327 124052 87 6 5 56 1 0 10 28 30 77 1 0 28 4 5 29 chain 7831 chr8 146364022 + 106842303 106842399 MER2 342 - 114 210 172120 96 chain 254576 chr8 146364022 + 106855394 106858449 L1P2 5180 - 1522 4617 16007 319 1 5 92 6 10 55 0 1 188 0 1 235 0 1 200 0 2 809 0 4 70 0 1 15 0 2 197 0 1 200 0 1 39 0 1 184 0 1 81 0 1 143 1 16 220 chain 387888 chr8 146364022 + 106862314 106868381 L1PB1 5432 + 59 5419 10526 69 0 2 271 1 0 5 0 2 73 12 17 46 3 0 6 31 0 797 1 4 26 6 1 6 0 5 6 1 0 7 2 0 5 35 30 563 19 2 79 2 1 38 3 1 95 0 1 281 7 0 341 27 29 519 0 1 127 0 8 15 3 5 92 305 0 101 32 1 172 0 1 153 1 6 416 332 24 96 0 4 6 0 4 10 4 1 160 42 45 268 1 2 12 3 0 21 1 0 5 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106968183 LTR17 781 - 0 781 51457 12 0 1 253 7 8 179 0 1 28 10 0 169 0 9 121 chain 91840 chr8 146364022 + 106979710 106980728 L1PA4 6152 + 5132 6152 39011 248 0 2 770 chain 47459 chr8 146364022 + 106981746 106982413 L1PREC2 3366 - 1309 1945 60862 13 4 6 89 41 7 139 1 3 108 1 0 271 chain 23216 chr8 146364022 + 106996388 106996654 L1PA5 6144 + 5689 5955 114617 266 chain 15701 chr8 146364022 + 106996655 106996837 L1PA5 6144 + 5955 6137 139261 182 chain 30572 chr8 146364022 + 106999447 106999894 MSTB-int 1649 + 30 522 83262 39 6 10 26 3 6 21 0 1 37 16 53 246 1 2 6 1 0 45 chain 55892 chr8 146364022 + 107007248 107008044 MER4E1 777 - 8 777 55186 12 1 0 97 5 6 23 1 0 86 2 0 5 12 6 38 0 4 5 2 0 38 0 1 108 3 1 90 0 2 3 25 0 8 0 4 138 2 0 65 3 5 24 chain 56691 chr8 146364022 + 107008870 107009606 LTR12 884 + 0 884 54726 143 2 1 103 0 25 64 8 31 10 2 0 181 0 103 223 chain 26941 chr8 146364022 + 107019204 107019510 AluYf4 310 - 5 310 96482 173 1 0 132 chain 19989 chr8 146364022 + 107029676 107030049 THE1B 368 - 0 368 127172 40 31 22 35 0 1 27 66 68 58 5 6 111 chain 530690 chr8 146364022 + 107035556 107041662 L1PA5 6144 + 3 6141 4116 117 1 15 8 14 0 311 0 1 236 0 1 320 0 1 671 0 1 621 0 1 215 0 1 729 0 5 1058 0 2 1640 0 19 165 chain 101074 chr8 146364022 + 107050159 107051261 L1PA3long 6157 - 0 1103 36494 338 0 1 764 chain 62101 chr8 146364022 + 107051261 107051939 L1PA3long 6157 + 4358 5036 51852 678 chain 30558 chr8 146364022 + 107069854 107070172 AluYb8 318 + 0 318 83288 318 chain 491475 chr8 146364022 + 107077191 107083421 L1PA7 6471 + 5 6466 7295 192 15 14 99 27 200 239 0 15 597 1 2 26 0 3 8 7 4 412 5 6 525 0 11 255 0 4 20 1 4 23 12 14 19 1 3 197 6 8 193 0 3 173 0 3 116 0 1 90 3 2 90 0 1 4 2 1 253 0 1 403 0 10 8 11 1 104 2 1 5 0 1 22 5 10 273 0 4 943 1 0 87 1 2 180 15 17 559 chain 3661 chr8 146364022 + 107088339 107088401 MLT2B4 540 + 491 540 212570 13 13 0 36 chain 78413 chr8 146364022 + 107089036 107090003 MER11B 1079 + 0 1062 44314 217 1 2 97 1 18 54 0 1 376 3 4 66 0 74 97 0 1 55 chain 37171 chr8 146364022 + 107099257 107099733 LTR2B 499 - 0 494 73280 52 0 1 129 1 0 8 0 1 171 7 26 42 3 0 56 0 1 7 chain 27727 chr8 146364022 + 107104773 107105241 MLT2A2 560 + 0 511 93946 180 1 0 9 35 38 81 9 41 57 27 38 57 1 0 4 1 0 6 chain 9074 chr8 146364022 + 107106098 107106204 L1PA8 5853 - 4 109 165194 88 1 0 17 chain 7810 chr8 146364022 + 107117284 107117448 LTR49 580 - 15 177 172252 87 53 51 24 chain 381920 chr8 146364022 + 107125691 107130224 L1PA5 6144 - 1486 6041 10700 30 0 1 102 0 7 913 0 2 659 0 2 252 0 3 379 1 0 1139 9 0 290 0 1 49 0 2 180 0 2 114 2 0 320 62 76 32 chain 97148 chr8 146364022 + 107130224 107131337 L1PA5 6144 + 4698 5810 37504 596 1 0 516 chain 27113 chr8 146364022 + 107131337 107131673 L1PA5 6144 + 5811 6144 95888 225 1 0 96 3 1 11 chain 28573 chr8 146364022 + 107133648 107133952 AluYb8 318 - 14 318 90853 304 chain 11909 chr8 146364022 + 107145295 107145661 MSTB2 466 + 85 455 152561 20 78 82 21 6 7 34 104 103 103 chain 24259 chr8 146364022 + 107169624 107169905 L1PA3long 6157 - 0 290 108900 12 0 8 134 0 1 135 chain 22266 chr8 146364022 + 107222312 107222617 L1PA8 5853 + 5551 5849 119049 13 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 6851 chr8 146364022 + 107253601 107253734 FAM 185 + 24 162 178567 12 3 4 16 27 31 75 chain 15418 chr8 146364022 + 107259612 107259819 Charlie3 2679 + 2396 2600 140141 67 6 0 80 0 3 54 chain 4191 chr8 146364022 + 107303785 107303838 MER44C 733 + 36 89 204679 53 chain 95307 chr8 146364022 + 107334377 107335796 L1PA14 3548 + 2026 3456 38003 172 0 1 173 3 15 92 1 2 45 15 14 79 0 1 27 7 6 35 1 0 231 5 0 19 3 1 14 2 0 26 0 1 25 2 0 67 0 2 30 45 38 76 0 14 57 1 10 44 4 0 36 4 2 12 1 0 5 1 0 16 1 0 42 chain 3289 chr8 146364022 + 107368684 107368734 MADE2 80 + 19 69 219194 34 0 3 5 3 0 8 chain 261179 chr8 146364022 + 107380679 107383980 L1PA8A 6298 - 7 3318 15635 192 5 3 73 1 2 461 0 4 395 5 6 330 1 0 631 0 1 116 1 2 203 1 2 165 4 0 216 0 1 38 0 3 22 3 7 26 4 1 25 1 0 11 3 2 24 0 5 132 2 1 5 0 1 205 chain 27186 chr8 146364022 + 107407530 107407870 THE1A 353 - 12 353 95641 158 0 1 72 1 0 83 0 1 26 chain 3237 chr8 146364022 + 107451461 107451635 MLT1A 405 + 133 337 220293 10 1 0 14 6 0 7 0 2 5 49 86 17 44 42 21 chain 215752 chr8 146364022 + 107453254 107455981 L1PA8A 6298 - 1064 3805 18124 76 0 1 67 0 3 66 4 1 164 0 2 579 10 13 185 1 2 85 2 0 118 1 2 172 2 1 245 1 0 4 5 10 43 1 0 4 0 1 8 6 8 37 0 5 223 0 3 124 1 0 27 3 0 10 1 0 308 0 1 128 1 0 15 chain 83507 chr8 146364022 + 107455981 107457025 L1PA8A 6298 + 5240 6291 42115 249 2 1 18 6 7 19 1 2 117 1 3 12 4 5 207 0 2 296 0 1 112 chain 31095 chr8 146364022 + 107499657 107500000 L1PA2 6032 - 7 351 82349 144 0 1 199 chain 5290 chr8 146364022 + 107501467 107501531 L1P1 4361 - 33 96 192114 23 1 0 40 chain 30132 chr8 146364022 + 107511108 107511424 AluYb8 318 + 0 316 84373 316 chain 37925 chr8 146364022 + 107512411 107512888 LTR2B 499 + 5 499 72241 7 0 1 61 3 0 37 0 19 176 0 1 10 1 0 182 chain 12330 chr8 146364022 + 107549761 107549914 L1PA6 6164 + 6006 6159 150895 153 chain 24317 chr8 146364022 + 107552835 107553214 THE1B 368 - 0 368 108561 78 3 0 91 2 0 25 9 6 86 28 18 8 0 9 34 2 0 13 chain 9948 chr8 146364022 + 107565325 107565442 L1PA3long 6157 + 6040 6154 160847 103 3 0 11 chain 508967 chr8 146364022 + 107572952 107579352 L1PA7 6471 + 12 6469 6244 418 10 47 43 4 3 271 1 2 417 0 4 160 1 2 63 1 2 55 10 9 56 26 27 42 0 2 27 0 1 314 1 2 350 6 5 186 0 2 110 19 0 221 0 1 287 0 1 252 0 1 57 0 5 155 1 0 126 28 29 321 4 6 111 1 2 274 0 4 75 15 14 4 0 1 376 1 0 200 0 5 454 0 3 81 0 2 3 1 0 459 2 7 300 chain 33959 chr8 146364022 + 107603282 107603678 L1PA4 6152 + 5758 6152 77678 239 7 0 144 0 5 6 chain 39494 chr8 146364022 + 107683745 107684191 L1PA5 6144 + 5683 6128 70028 347 1 0 98 chain 86960 chr8 146364022 + 107687667 107688941 L1PA13 3608 - 1868 3144 40800 188 4 3 122 0 9 40 4 8 193 3 1 17 2 6 68 26 0 139 1 2 31 0 2 67 0 3 119 43 55 37 8 6 42 0 4 46 1 0 16 2 0 18 2 0 17 1 0 17 chain 30410 chr8 146364022 + 107697945 107698472 L1PB1 5432 + 4905 5402 83662 112 0 2 84 1 2 10 3 0 19 1 0 12 2 1 9 2 0 3 2 0 9 2 0 52 18 16 45 1 0 15 45 31 5 1 0 14 2 0 24 1 0 21 1 0 11 chain 30296 chr8 146364022 + 107728570 107728888 AluYb8 318 + 0 318 83920 318 chain 71814 chr8 146364022 + 107754591 107755513 L1PA11 4918 + 3586 4517 47560 594 0 5 146 0 1 24 0 11 28 1 0 4 15 12 63 2 0 14 1 0 20 1 0 9 chain 29238 chr8 146364022 + 107770729 107771041 AluYa5 310 - 0 310 87862 217 2 0 93 chain 21212 chr8 146364022 + 107792943 107793190 L1PA7 6471 - 1 247 123169 4 1 0 242 chain 253075 chr8 146364022 + 107801399 107804624 HERV9-int 5642 + 16 3251 16075 402 0 1 180 6 4 113 6 0 75 1 0 50 0 12 85 30 115 32 81 1 17 76 78 127 0 1 1576 2 0 366 chain 36821 chr8 146364022 + 107805846 107806335 LTR12 884 + 0 748 73777 25 1 0 111 0 2 49 0 157 34 2 0 169 0 103 98 chain 49776 chr8 146364022 + 107834117 107834756 LTR12 884 - 11 884 59177 15 0 236 243 6 4 30 4 5 315 1 0 25 chain 56488 chr8 146364022 + 107851263 107852025 LTR17 781 - 24 781 54859 44 6 7 379 1 0 71 7 6 14 1 0 57 1 0 23 1 0 84 14 13 59 chain 3498 chr8 146364022 + 107852058 107852096 LTR17 781 - 743 781 215378 38 chain 54346 chr8 146364022 + 107873304 107874246 L1PREC2 3366 - 320 2329 56134 36 6 4 34 40 21 25 7 5 11 56 43 14 7 3 42 8 7 49 2 0 101 1 6 107 0 3 58 0 1103 65 0 3 57 15 12 80 1 0 120 chain 34827 chr8 146364022 + 107887502 107887927 L1PA6 6164 + 5730 6156 76438 252 0 1 173 chain 248089 chr8 146364022 + 107895308 107898112 L1PA5 6144 + 3335 6141 16360 740 3 0 1223 0 5 692 1 0 93 0 4 33 6 3 13 chain 26018 chr8 146364022 + 107905216 107905526 L1PA7 6471 - 5 319 99954 224 0 4 86 chain 28596 chr8 146364022 + 107906475 107907194 MLT2A1 477 - 0 477 90756 6 0 4 43 6 0 19 252 6 6 1 0 30 15 6 33 1 0 150 1 5 29 0 1 18 0 1 6 1 0 10 20 30 24 0 2 48 chain 16426 chr8 146364022 + 107914653 107915011 THE1C 375 + 0 364 137132 15 2 0 12 1 0 20 85 96 27 1 0 9 0 2 5 22 20 144 1 0 14 chain 21386 chr8 146364022 + 107939945 107940238 L1PA8 5853 - 2 289 122567 91 1 0 19 3 2 50 14 12 70 2 0 43 chain 26174 chr8 146364022 + 107952863 107953217 THE1B 368 - 0 368 99305 174 0 2 23 1 0 46 5 3 48 13 28 44 chain 3052 chr8 146364022 + 107954345 107954388 LTR78 714 - 486 528 223958 27 2 1 14 chain 2818 chr8 146364022 + 107962806 107962849 MER52A 1651 + 963 999 228494 30 7 0 6 chain 28610 chr8 146364022 + 107973201 107973551 L1PA8A 6298 + 5934 6289 90698 249 0 1 79 6 10 16 chain 255490 chr8 146364022 + 107974799 107977681 L1PA5 6144 - 10 2898 15958 836 0 5 1056 0 1 432 0 1 56 1 0 501 chain 4710 chr8 146364022 + 108004918 108004971 MER1B 344 + 286 339 198394 53 chain 11802 chr8 146364022 + 108013570 108013904 MER4E 760 - 10 355 153034 12 0 2 30 15 23 10 1 0 55 18 19 60 56 58 19 40 40 12 1 0 5 chain 297402 chr8 146364022 + 108014051 108018053 L1PA8 5853 + 1763 5809 13559 12 0 2 245 6 0 64 12 7 36 0 1 91 4 30 25 0 8 197 0 4 198 8 0 29 3 2 99 1 2 50 22 17 37 13 3 12 3 7 14 0 3 233 20 24 179 6 9 501 0 2 217 20 33 208 4 0 212 1 0 131 0 1 276 0 4 17 0 2 75 0 2 395 1 2 83 1 0 44 2 0 43 0 8 19 21 21 41 2 1 19 2 1 48 chain 5540 chr8 146364022 + 108018142 108018209 L1PB1 5432 + 1450 1517 189659 67 chain 11912 chr8 146364022 + 108034534 108034764 L1MA8 2339 + 1840 2064 152540 70 20 16 32 2 0 18 33 33 55 chain 76961 chr8 146364022 + 108054521 108055548 L1PB1 5432 - 2358 3398 44992 119 25 29 301 0 5 99 0 2 27 1 0 61 7 1 51 0 4 82 1 2 143 0 4 110 chain 168117 chr8 146364022 + 108055548 108057939 L1PB1 5432 + 3048 5391 22271 194 1 0 487 7 0 221 1 3 109 0 5 26 5 3 87 1 4 445 18 15 29 0 3 76 28 0 39 8 0 10 4 11 74 3 4 210 1 2 9 1 0 24 1 0 9 16 11 11 3 1 13 0 8 29 2 1 60 1 0 15 1 0 4 2 0 11 9 0 16 24 19 16 8 6 5 0 1 17 chain 5452 chr8 146364022 + 108066193 108066256 L1MB8 1703 + 1168 1231 190503 63 chain 129871 chr8 146364022 + 108070179 108071615 L1PA3long 6157 - 1 1438 28116 337 0 1 1099 chain 465598 chr8 146364022 + 108071937 108077869 L1PA7 6471 - 13 6471 8202 19 21 22 108 1 2 683 0 3 316 1 9 428 4 5 297 18 19 340 2 1 203 0 1 675 3 4 75 0 1 213 3 410 284 0 3 768 8 9 8 0 7 140 0 1 117 16 35 377 12 77 41 10 15 155 12 9 98 0 1 6 1 0 60 1 0 10 17 14 130 0 7 8 0 1 243 chain 29273 chr8 146364022 + 108120234 108120542 AluYb8 318 + 0 308 87678 308 chain 88979 chr8 146364022 + 108122497 108123587 L1P3 4156 + 3041 4136 40013 45 0 5 455 0 4 276 1 0 281 2 0 7 2 1 21 chain 28120 chr8 146364022 + 108182249 108182676 LTR2 463 - 16 463 92570 11 11 14 14 2 1 26 0 1 4 14 17 245 6 7 49 1 0 4 1 5 16 0 10 23 chain 2599 chr8 146364022 + 108190444 108190793 L1MB3 1562 + 867 1227 231699 21 245 257 17 44 43 22 chain 20156 chr8 146364022 + 108194828 108195075 L1PA8A 6298 - 323 570 125418 247 chain 26277 chr8 146364022 + 108195075 108195388 L1PA8A 6298 + 5977 6291 98914 206 0 1 107 chain 9722 chr8 146364022 + 108213095 108213219 L1MB8 1703 - 307 432 161975 100 0 1 24 chain 23392 chr8 146364022 + 108215017 108215332 THE1C-int 1605 - 1110 1448 113691 43 5 20 66 0 2 31 12 18 158 chain 30637 chr8 146364022 + 108215398 108215764 L1P2 5180 + 1609 1975 83143 366 chain 540408 chr8 146364022 + 108252836 108258831 L1PA3long 6157 + 0 6147 2753 152 0 1 587 0 2 35 1 129 256 0 3 3189 0 4 1041 0 1 39 0 13 695 chain 4999 chr8 146364022 + 108266636 108266716 MADE1 96 - 0 96 195145 36 12 28 32 chain 28134 chr8 146364022 + 108465523 108465879 THE1B 368 - 0 368 92527 177 7 5 14 1 0 113 0 15 44 chain 16139 chr8 146364022 + 108482735 108482917 L1PA7 6471 - 875 1057 137937 182 chain 70995 chr8 146364022 + 108482917 108483776 L1PA7 6471 + 5603 6453 47930 18 1 0 170 0 1 180 0 1 221 9 0 114 8 7 138 chain 230655 chr8 146364022 + 108486150 108488817 L1PA5 6144 + 3466 6135 17272 293 0 2 42 0 1 375 0 1 697 1 0 270 0 1 309 1 2 536 5 4 76 2 0 60 chain 7724 chr8 146364022 + 108558185 108558292 L1PA10 4194 + 4046 4150 172757 68 5 2 34 chain 26401 chr8 146364022 + 108559806 108560122 THE1C-int 1605 - 1290 1605 98411 299 1 0 16 chain 44122 chr8 146364022 + 108566489 108566997 L1PA5 6144 - 796 1306 64051 377 0 1 24 0 1 107 chain 3584 chr8 146364022 + 108566998 108567036 L1PA5 6144 + 5338 5376 213907 38 chain 65501 chr8 146364022 + 108567036 108567788 L1PA5 6144 + 5377 6128 50340 626 2 1 124 chain 386895 chr8 146364022 + 108604670 108609585 L1P2 5180 - 183 5177 10552 120 3 0 12 0 1 462 0 5 39 6 10 130 3 2 242 5 6 321 10 6 1433 0 2 92 0 3 371 1 3 911 0 1 27 0 15 68 0 4 145 8 7 44 1 0 68 19 0 183 0 1 4 16 15 41 6 5 13 20 91 91 chain 52204 chr8 146364022 + 108609631 108610322 LTR30 714 - 11 713 57497 18 3 5 120 26 29 70 11 12 437 0 5 6 chain 39475 chr8 146364022 + 108616811 108617977 HERV30-int 1034 - 167 887 70052 24 11 0 19 2 0 21 123 25 19 52 0 24 39 0 49 194 61 19 29 24 20 34 0 36 20 5 89 1 0 78 13 1 38 8 3 51 33 0 60 1 0 15 0 1 24 7 1 13 chain 53726 chr8 146364022 + 108618655 108619357 LTR30 714 - 9 714 56519 40 1 2 202 15 16 194 13 14 237 chain 20921 chr8 146364022 + 108621808 108622041 L1PA3long 6157 + 5919 6152 124210 233 chain 22401 chr8 146364022 + 108629643 108630004 Tigger4b 360 + 0 360 118479 12 14 31 11 16 0 206 1 0 35 6 12 9 7 0 44 chain 43080 chr8 146364022 + 108658266 108658816 MLT2A2 560 - 0 553 65319 6 0 4 367 1 0 176 chain 412015 chr8 146364022 + 108661414 108666608 L1P2 5180 - 6 5178 9746 38 1 0 47 1 0 353 8 15 123 0 1 105 1 3 801 1 0 68 0 3 5 11 10 424 2 1 259 15 0 591 11 0 207 1 2 672 1 0 640 4 19 138 12 16 68 1 0 50 1 0 69 19 0 252 1 0 39 6 5 148 chain 29041 chr8 146364022 + 108666619 108667016 MER57A1 433 - 23 433 88805 127 26 28 54 1 12 189 chain 3862 chr8 146364022 + 108668598 108668640 LTR12C 1709 + 795 837 209429 42 chain 22267 chr8 146364022 + 108699358 108699637 AluSq2 311 + 16 287 119046 111 9 1 159 chain 541929 chr8 146364022 + 108724194 108730314 L1PA3long 6157 - 0 6153 2519 259 0 1 125 0 39 1098 1 0 1478 0 1 316 0 2 1999 33 16 109 0 7 604 1 2 97 chain 23576 chr8 146364022 + 108751323 108751582 L1PA2 6032 - 0 259 112706 259 chain 25030 chr8 146364022 + 108826342 108826706 THE1D 372 + 16 372 104637 45 0 1 13 18 0 110 12 15 32 0 7 129 1 0 4 chain 30145 chr8 146364022 + 108828540 108828887 L1PA5 6144 - 2 349 84335 151 1 2 104 1 0 90 chain 123142 chr8 146364022 + 108836375 108837929 L1PA8A 6298 - 7 1553 29994 104 3 10 687 2 1 16 0 4 358 5 6 143 23 3 9 0 1 87 11 0 7 0 11 99 chain 142870 chr8 146364022 + 108844516 108846211 L1PA6 6164 - 2 1681 25670 69 1 0 76 1 4 75 0 2 103 1 2 748 21 0 64 6 7 363 1 0 166 chain 15334 chr8 146364022 + 108849566 108849783 L1PA8 5853 - 28 241 140381 65 1 0 19 2 1 52 1 0 9 3 2 65 chain 28968 chr8 146364022 + 108854903 108855214 AluYa5 310 - 0 310 89142 184 1 0 126 chain 6482 chr8 146364022 + 108882977 108883150 L1PREC2 3366 + 2888 3040 181381 17 5 0 11 9 6 29 4 1 11 20 12 27 11 9 29 chain 186757 chr8 146364022 + 108884981 108887346 L1PA8A 6298 - 8 2372 20356 420 1 5 203 0 1 167 3 6 108 0 3 240 1 2 635 0 2 42 6 8 5 1 0 24 0 1 10 15 0 52 1 5 116 0 1 151 7 0 157 chain 542816 chr8 146364022 + 108902112 108908133 L1PA3long 6157 - 0 6157 2373 4 0 1 1813 0 3 72 1 0 578 0 1 994 0 1 257 0 3 1334 0 3 189 0 128 108 4 0 515 1 2 151 chain 31180 chr8 146364022 + 108908136 108908506 MER11C 1089 - 711 1089 82198 12 0 5 99 0 3 259 chain 5683 chr8 146364022 + 108908588 108908712 MER58B 340 + 203 332 188271 38 38 43 48 chain 4476 chr8 146364022 + 108927983 108928110 HUERS-P1-int 2401 + 427 530 201059 9 1 0 33 2 1 11 2 0 7 40 20 22 chain 76486 chr8 146364022 + 108933784 108934930 L1PA13 3608 + 2319 3464 45218 16 1 0 16 11 7 43 0 8 4 1 2 8 2 0 72 1 2 36 0 1 4 6 5 70 1 0 53 0 3 17 0 2 326 5 4 58 0 3 51 1 0 29 1 0 18 0 14 65 9 0 17 3 1 60 1 0 57 2 0 5 8 6 42 2 0 4 2 0 11 2 0 5 chain 214402 chr8 146364022 + 108937639 108940065 L1PA5 6144 - 5 2441 18202 146 5 0 6 2 7 679 0 4 314 0 5 20 0 1 1254 chain 40253 chr8 146364022 + 108946900 108947459 MER11B 1079 + 0 580 68940 200 3 5 20 0 5 124 3 6 65 12 11 81 0 4 15 17 25 19 chain 5213 chr8 146364022 + 108961811 108961888 L1PB4 2604 + 2443 2526 192890 49 5 11 23 chain 19695 chr8 146364022 + 108976496 108976737 AluSp 311 - 38 277 128118 99 0 1 21 3 0 118 chain 111943 chr8 146364022 + 108990648 108991909 L1PA4 6152 + 4881 6152 33680 33 1 0 1115 0 3 35 0 3 64 0 3 7 0 2 6 chain 33188 chr8 146364022 + 109002570 109003135 L1PA13 3608 + 3008 3548 78916 117 4 3 32 1 0 41 4 5 54 0 1 13 2 0 62 1 0 55 8 5 47 2 0 5 2 0 19 1 0 16 0 3 11 42 28 10 1 0 6 2 0 7 chain 14982 chr8 146364022 + 109014051 109014280 L1PA8 5853 + 5631 5853 141377 48 1 0 9 5 0 11 0 1 40 2 1 16 7 6 90 chain 3572 chr8 146364022 + 109019689 109019732 L1MC4 1079 + 596 639 214103 43 chain 113280 chr8 146364022 + 109025721 109027083 L1PA7 6471 + 5102 6470 33287 344 0 1 155 0 4 8 0 3 46 0 1 45 1 2 52 2 0 191 5 4 350 8 7 155 chain 17678 chr8 146364022 + 109033926 109034163 L1PA8 5853 + 5619 5847 133750 63 1 0 8 6 0 50 2 1 19 1 0 87 chain 12180 chr8 146364022 + 109048433 109048591 Tigger1 2417 + 1099 1258 151496 20 1 2 137 chain 50447 chr8 146364022 + 109060723 109061312 L1P1 4361 - 1040 1633 58682 73 1 5 515 chain 14329 chr8 146364022 + 109061316 109061479 L1PA6 6164 + 5995 6158 143461 163 chain 37199 chr8 146364022 + 109061630 109062134 L1PA8 5853 - 2 503 73237 91 1 0 19 2 1 45 5 7 9 5 4 15 2 0 51 2 0 47 1 0 185 1 4 23 chain 31626 chr8 146364022 + 109070042 109070402 L1PA3long 6157 - 1838 2204 81163 22 1 2 295 0 5 42 chain 164504 chr8 146364022 + 109070402 109072240 L1PA3long 6157 + 4319 6157 22745 45 0 2 231 0 1 603 1 0 183 2 1 5 1 0 767 chain 446771 chr8 146364022 + 109072279 109077410 L1PA5 6144 + 0 6143 8856 89 0 996 281 0 1 66 1 0 1737 1 0 316 0 4 184 3 4 4 0 1 505 0 1 398 0 1 39 0 1 29 0 1 532 1 0 78 0 4 25 0 4 587 4 6 238 3 1 10 chain 5628 chr8 146364022 + 109077439 109077513 L1PA8 5853 + 5766 5841 188781 18 1 2 55 chain 26200 chr8 146364022 + 109082506 109082783 AluYb8 318 - 5 282 99204 277 chain 23722 chr8 146364022 + 109098851 109099138 AluSc5 308 - 11 298 111923 287 chain 181264 chr8 146364022 + 109099833 109101961 L1PA7 6471 + 4321 6457 20873 150 1 7 186 0 3 158 1 0 160 2 0 210 0 4 40 0 1 374 0 3 601 6 0 239 chain 517711 chr8 146364022 + 109115715 109123468 L1PA7 6471 + 3 6459 5401 856 24 0 489 0 1 205 331 0 199 1 0 32 5 4 205 6 7 34 1 0 82 5 6 138 1 0 60 0 2 134 4 5 57 0 2 119 35 19 166 0 4 74 0 2 367 2 4 733 0 3 597 0 1 9 0 1 109 0 6 249 0 1 138 5 0 7 1 6 392 959 0 93 1 0 41 0 1 37 1 4 155 0 3 458 5 6 54 0 2 77 chain 82421 chr8 146364022 + 109121620 109122546 L1PA4 6152 - 8 934 42575 490 0 1 219 1 0 216 chain 22259 chr8 146364022 + 109123483 109123727 L1PA3long 6157 - 1 244 119081 148 1 0 95 chain 21129 chr8 146364022 + 109127989 109128330 THE1D 372 - 13 372 123452 77 1 0 36 2 8 17 31 33 33 1 0 79 9 19 36 0 2 19 chain 187690 chr8 146364022 + 109133336 109135708 L1PA7 6471 - 4080 6469 20254 68 5 6 56 1 0 355 0 3 81 0 1 476 6 7 188 10 16 122 0 1 37 0 1 52 3 0 5 0 3 503 1 2 321 0 1 10 0 1 37 13 14 22 chain 338017 chr8 146364022 + 109135708 109139768 L1PA7 6471 + 2389 6470 11953 250 0 2 165 0 1 258 0 1 932 0 1 15 1 2 490 0 3 159 0 4 159 0 1 147 0 1 528 1 2 11 0 3 26 0 1 776 0 1 142 chain 290958 chr8 146364022 + 109161978 109166010 L1PA10 4194 + 175 4161 13964 11 1 0 4 1 0 9 3 0 8 22 16 9 2 0 9 1 0 9 1 0 21 6 4 11 1 0 8 76 48 11 1 0 10 1 0 11 5 0 6 1 0 15 7 0 8 1 0 78 11 9 797 0 5 78 0 4 329 3 5 52 1 0 13 3 4 13 5 4 4 0 1 75 0 3 119 16 29 487 1 0 111 4 0 37 21 23 44 13 7 349 8 6 46 0 2 615 1 0 31 5 12 36 0 1 5 4 1 5 0 1 184 0 1 53 7 5 29 3 0 34 1 0 11 chain 169744 chr8 146364022 + 109169249 109171189 L1PA5 6144 - 994 2945 22081 565 0 1 625 0 4 334 5 6 100 1 6 310 chain 87841 chr8 146364022 + 109171192 109172189 L1PA5 6144 + 5137 6139 40431 154 0 4 792 0 1 51 chain 507528 chr8 146364022 + 109179030 109184642 L1PA3long 6157 + 547 6157 6363 1284 0 1 377 1 0 554 0 1 1182 0 1 694 1 0 1189 3 0 327 chain 9598 chr8 146364022 + 109211679 109211819 MER1B 344 - 0 186 162612 69 7 53 64 chain 85499 chr8 146364022 + 109222827 109223802 L1PA5 6144 - 3 979 41345 6 3 0 840 0 4 126 chain 13867 chr8 146364022 + 109278539 109278711 Tigger3a 397 + 158 332 145014 159 0 2 13 chain 36711 chr8 146364022 + 109321993 109322434 LTR7 482 - 8 482 73939 41 12 14 124 0 31 264 chain 26123 chr8 146364022 + 109327817 109328116 AluSp 311 - 4 303 99513 299 chain 25294 chr8 146364022 + 109346810 109347242 Tigger2 2703 + 2272 2703 103256 28 9 0 78 14 31 58 1 0 57 4 0 20 0 1 39 8 13 62 36 26 18 chain 100342 chr8 146364022 + 109350818 109352259 THE1D-int 1627 - 11 1548 36679 6 7 0 118 1 6 262 10 49 194 17 7 76 3 6 32 3 4 74 17 17 17 37 36 186 0 71 346 5 0 30 chain 6716 chr8 146364022 + 109352332 109352417 THE1D 372 - 0 89 179566 30 0 4 55 chain 8486 chr8 146364022 + 109364790 109364914 L1M1 2793 + 843 964 168376 50 5 3 6 1 0 62 chain 42582 chr8 146364022 + 109365392 109366345 L1MA2 4263 + 3496 4111 65922 70 1 0 18 7 3 75 1 0 144 3 0 125 356 34 93 7 0 16 0 1 29 1 0 7 chain 122439 chr8 146364022 + 109370391 109371958 THE1B-int 1605 - 0 1605 30239 108 1 3 262 0 4 195 1 2 55 0 1 119 2 1 209 13 16 173 0 25 94 0 2 312 1 2 22 chain 23360 chr8 146364022 + 109371958 109372311 THE1B 368 - 0 368 113873 40 4 1 90 0 1 42 0 2 97 36 51 44 chain 5626 chr8 146364022 + 109385142 109385223 Charlie4a 502 + 306 384 188823 32 3 0 46 chain 244641 chr8 146364022 + 109386590 109389529 L1PA7 6471 - 1 2965 16522 12 4 0 142 0 1 117 0 18 221 8 0 342 0 3 627 0 3 315 0 4 57 0 2 609 5 7 437 0 4 43 chain 34833 chr8 146364022 + 109395937 109396347 L1PA8A 6298 - 8 418 76432 410 chain 82981 chr8 146364022 + 109398771 109399705 L1PA4 6152 + 5207 6143 42344 104 0 1 12 0 1 818 chain 4280 chr8 146364022 + 109423009 109423088 MER3 215 + 129 215 203476 26 6 0 8 9 22 30 chain 21084 chr8 146364022 + 109430647 109430930 AluSq2 311 + 8 295 123606 40 7 9 53 0 1 22 1 2 160 chain 25521 chr8 146364022 + 109432874 109433314 LTR7B 505 - 14 505 102136 14 4 5 30 2 1 23 6 5 5 0 1 55 0 41 22 1 0 29 6 26 31 0 1 5 47 26 12 0 1 43 0 10 105 chain 42458 chr8 146364022 + 109433337 109433836 MER9a3 513 - 0 499 66064 79 0 1 177 1 0 242 chain 33083 chr8 146364022 + 109439521 109439970 MLT2A1 477 + 0 477 79074 18 1 0 117 3 0 34 4 1 9 0 1 199 9 43 55 chain 38722 chr8 146364022 + 109506681 109507141 L1PA5 6144 - 12 475 71121 142 1 0 229 0 4 88 chain 554732 chr8 146364022 + 109512528 109518674 L1PA4 6152 - 1 6152 857 832 1 0 4 0 1 5 0 3 904 2 1 717 0 2 499 1 0 1323 0 1 20 0 1 1838 chain 15424 chr8 146364022 + 109539957 109540131 L1PA5 6144 - 12 186 140116 174 chain 112574 chr8 146364022 + 109540937 109542216 L1PA4 6152 - 9 1281 33507 165 8 0 80 1 0 40 0 1 134 0 1 851 chain 91757 chr8 146364022 + 109563957 109565219 L1PREC2 3366 + 1591 2864 39048 99 1 4 12 0 2 62 0 1 146 4 6 97 7 2 189 11 12 358 0 2 130 1 0 4 2 3 32 2 0 7 0 11 36 1 0 16 0 1 27 7 3 11 chain 453776 chr8 146364022 + 109602617 109608433 L1PA8 5853 + 50 5853 8624 22 2 0 10 1 0 13 49 13 79 0 1 109 23 11 61 0 1 40 4 8 115 2 3 93 0 2 506 0 3 67 4 0 6 4 8 115 0 4 118 1 2 5 1 0 441 0 2 118 1 0 121 3 5 65 0 1 204 0 1 232 0 4 362 0 2 162 2 0 106 3 0 351 0 1 5 2 1 65 0 1 137 5 7 176 5 6 68 0 1 365 0 1 221 0 1 197 4 3 104 9 7 290 0 12 134 1 0 50 0 7 49 0 1 10 1 0 46 2 0 68 4 3 13 7 6 46 1 0 16 1 0 93 chain 55261 chr8 146364022 + 109640656 109641331 L1PA8 5853 - 292 963 55545 466 3 1 84 2 0 120 chain 6368 chr8 146364022 + 109660668 109660746 MLT1D 503 + 20 98 182259 78 chain 7710 chr8 146364022 + 109675157 109675282 L1PREC2 3366 - 533 657 172870 26 7 8 47 3 1 42 chain 23684 chr8 146364022 + 109675286 109675686 L1PA11 4918 + 4136 4507 112134 98 28 28 20 29 0 48 3 7 58 2 1 11 3 1 22 0 2 42 2 0 14 1 0 19 chain 100631 chr8 146364022 + 109690978 109692106 L1PA4 6152 - 1 1130 36558 856 0 1 272 chain 149359 chr8 146364022 + 109692106 109693754 L1PA4 6152 + 3327 4998 24706 197 0 22 540 0 1 911 chain 23080 chr8 146364022 + 109702770 109703064 AluY 311 + 8 297 115239 115 10 4 72 0 1 97 chain 5537 chr8 146364022 + 109706391 109706476 L1MB5 1630 - 11 94 189689 5 1 0 13 1 0 6 0 1 45 1 0 13 chain 13264 chr8 146364022 + 109714841 109714998 L1PA4 6152 - 9 166 147233 157 chain 28943 chr8 146364022 + 109719246 109719571 L1PA6 6164 + 5837 6162 89257 325 chain 29288 chr8 146364022 + 109730176 109730486 AluYa5 310 - 0 310 87629 310 chain 4986 chr8 146364022 + 109752393 109752449 LTR14B 630 - 574 630 195297 56 chain 28694 chr8 146364022 + 109757905 109758362 LTR2 463 + 0 463 90350 13 0 1 175 1 2 4 1 0 17 17 17 38 12 16 13 2 0 5 0 2 56 38 39 65 chain 105617 chr8 146364022 + 109760304 109761973 L1PA11 4918 - 287 1831 35347 20 47 33 11 2 0 13 1 0 10 18 14 10 26 16 16 1 0 14 2 0 67 2 0 13 2 1 64 6 0 221 13 15 11 1 0 22 29 0 208 0 1 45 58 9 133 9 0 191 1 3 290 8 9 84 chain 44423 chr8 146364022 + 109778826 109779384 MLT2A2 560 - 0 560 63668 27 0 1 123 0 1 81 1 0 123 0 1 203 chain 23877 chr8 146364022 + 109800920 109801218 AluSc 308 + 12 308 111038 193 0 1 38 3 0 64 chain 3116 chr8 146364022 + 109804450 109804486 LTR68 653 - 615 651 222614 36 chain 14435 chr8 146364022 + 109818525 109818860 L1PB1 5432 - 12 317 143091 16 1 0 11 7 6 17 1 0 24 2 0 9 13 10 19 19 8 4 1 0 10 6 5 34 0 1 8 1 0 17 2 1 53 2 0 9 6 2 9 1 0 13 1 0 19 chain 32066 chr8 146364022 + 109844347 109845078 MER57A1 433 + 0 433 80742 273 310 0 91 0 12 57 chain 18974 chr8 146364022 + 109859960 109860208 L1PA8 5853 - 0 245 130171 6 0 1 86 1 0 19 2 1 52 1 0 9 2 1 70 chain 31906 chr8 146364022 + 109874622 109874970 L1PA3long 6157 + 5808 6156 81000 348 chain 29253 chr8 146364022 + 109891431 109891736 AluYb8 318 + 0 305 87778 305 chain 5420 chr8 146364022 + 109909908 109910019 MLT1A0 366 - 146 256 190807 38 35 34 38 chain 549675 chr8 146364022 + 109942711 109948813 L1PA3long 6157 + 2 6157 1490 503 2 45 865 0 5 1270 0 1 1127 9 6 903 0 4 1030 0 3 393 chain 29682 chr8 146364022 + 109959300 109959616 AluYb9 318 + 0 315 85897 123 1 0 192 chain 28399 chr8 146364022 + 109966475 109966785 AluYb8 318 - 8 318 91589 310 chain 26765 chr8 146364022 + 109980746 109981126 THE1C 375 + 0 375 97107 125 13 10 49 4 3 38 0 1 33 1 0 91 1 0 25 chain 510996 chr8 146364022 + 109992857 109999246 L1PA7 6471 - 1 6468 6071 301 0 1 453 0 3 12 0 2 83 0 1 7 3 4 337 1 0 4 0 1 101 0 1 122 0 3 5 1 0 421 0 2 87 1 2 4 1 0 27 0 1 722 0 1 88 5 6 67 3 5 40 15 14 14 1 0 8 0 1 27 1 0 5 8 10 193 15 16 489 0 1 68 0 4 13 0 1 57 2 4 14 2 8 330 4 33 76 2 7 54 2 0 5 7 9 99 0 2 295 0 1 134 0 1 121 0 4 63 0 1 30 2 1 572 0 1 4 1 0 104 0 2 8 7 8 59 0 1 181 1 0 400 chain 51725 chr8 146364022 + 110002554 110003245 L1PA8 5853 + 5172 5852 57803 66 7 0 326 1 0 44 2 0 71 1 0 14 16 2 7 0 16 18 7 6 18 1 0 92 chain 2983 chr8 146364022 + 110020819 110020850 LTR33 499 - 9 40 225382 31 chain 9491 chr8 146364022 + 110047259 110047406 MER20 218 + 47 199 163115 21 22 26 67 0 1 37 chain 4786 chr8 146364022 + 110051829 110051907 MER53 195 - 108 190 197506 11 0 2 34 6 8 27 chain 125558 chr8 146364022 + 110056215 110057777 THE1B-int 1605 - 19 1605 29226 799 8 9 135 8 6 180 0 25 432 chain 64100 chr8 146364022 + 110069354 110070190 L1PA8 5853 + 5032 5853 50964 55 1 0 153 0 3 54 0 1 56 21 0 107 0 2 101 1 0 40 7 5 46 0 8 16 1 0 9 1 0 54 1 0 18 1 0 93 chain 46908 chr8 146364022 + 110079143 110079664 L1PA5 6144 - 1 522 61300 521 chain 84916 chr8 146364022 + 110082375 110083606 LTR12D 1347 - 0 1347 41545 220 37 111 281 1 0 4 4 46 105 42 0 13 0 31 92 1 0 66 0 1 41 0 36 22 8 7 51 21 0 12 8 6 202 chain 2376 chr8 146364022 + 110083044 110083069 LTR12D 1347 - 814 839 196806 25 chain 57874 chr8 146364022 + 110093942 110094669 THE1D-int 1627 - 60 787 54048 313 1 0 276 2 3 135 chain 95443 chr8 146364022 + 110127836 110128930 L1P1 4361 - 20 1116 37973 12 2 1 23 1 0 157 1 0 158 0 5 740 chain 138960 chr8 146364022 + 110147957 110149982 L1PB1 5432 - 6 1971 26313 4 1 0 18 1 0 11 1 0 23 1 0 24 14 5 9 1 0 5 3 1 18 15 7 5 3 0 16 1 0 44 1 0 15 2 1 29 0 10 12 3 1 9 5 1 14 1 0 10 2 0 17 52 14 184 0 1 35 0 1 232 6 7 13 3 1 201 1 0 194 0 1 231 5 4 43 0 1 222 1 6 147 0 1 117 chain 77960 chr8 146364022 + 110151400 110152445 MER11C 1089 - 30 1089 44542 139 1 0 56 0 1 125 0 1 38 1 0 4 1 5 112 1 0 5 42 41 146 1 0 65 0 4 54 7 16 247 chain 42383 chr8 146364022 + 110168379 110168849 L1PA4 6152 - 0 475 66176 6 0 5 464 chain 50510 chr8 146364022 + 110207060 110207785 THE1B-int 1605 - 897 1605 58645 45 36 37 154 1 0 21 40 23 428 chain 58833 chr8 146364022 + 110219864 110220524 L1PA4 6152 + 5482 6143 53498 335 0 1 325 chain 519479 chr8 146364022 + 110224287 110231695 L1PA7 6471 - 4 6471 5218 10 5 0 19 0 2 182 16 29 66 1 17 108 6 5 329 0 2 81 0 3 264 0 1 141 1 0 109 1015 2 148 1 0 271 0 12 830 1 0 250 0 5 35 0 1 5 0 3 40 1 0 11 6 10 83 1 5 45 0 1 428 11 0 21 0 4 72 2 1 138 0 1 150 13 14 54 2 3 111 0 1 88 0 1 262 0 2 204 0 1 137 0 1 86 0 1 186 1 2 156 1 5 231 1 4 126 0 1 446 0 1 199 1 2 65 0 1 8 0 1 127 chain 89975 chr8 146364022 + 110225628 110226635 LTR13 1007 + 0 1007 39660 1007 chain 252898 chr8 146364022 + 110231730 110235707 MER61-int 3695 + 0 3695 16086 26 0 4 7 20 10 223 3 2 32 0 1 105 1 2 56 11 0 73 1 5 70 29 0 21 10 106 92 0 1 12 0 5 152 6 14 74 2 1 26 0 8 169 26 0 482 0 1 7 1 0 67 0 2 115 0 1 159 10 1 48 5 8 121 302 2 156 0 18 9 21 1 30 23 25 53 8 6 159 1 0 81 29 13 12 2 3 23 6 5 248 24 4 20 1 2 173 8 7 148 24 28 44 5 1 18 9 8 42 0 11 36 chain 22877 chr8 146364022 + 110263394 110263690 AluSg7 307 - 0 298 116205 28 4 5 135 7 8 122 chain 3430 chr8 146364022 + 110274809 110274849 Charlie1a 1436 + 502 542 216576 40 chain 21628 chr8 146364022 + 110294812 110295068 L1PA7 6471 + 6210 6466 121663 92 1 2 148 1 0 14 chain 5288 chr8 146364022 + 110300894 110300960 MER41B 635 + 481 547 192137 66 chain 24711 chr8 146364022 + 110313305 110313712 LTR7B 505 + 0 491 106378 106 1 11 54 19 87 31 36 1 21 0 41 16 0 1 72 18 17 33 chain 15644 chr8 146364022 + 110316496 110316677 HERVH-int 3825 + 3644 3825 139454 181 chain 26271 chr8 146364022 + 110319262 110319688 LTR7B 505 + 0 505 98930 105 0 10 56 18 86 33 39 0 21 1 42 88 16 15 49 chain 282536 chr8 146364022 + 110319688 110324155 L1PB1 5432 + 1276 5420 14500 11 0 1 116 4 11 129 4 7 21 0 12 53 0 1 384 0 146 30 0 1 29 1 0 39 0 1 227 3 0 115 368 236 593 0 1 31 0 3 138 1 0 120 1 0 4 19 1 16 1 0 72 0 4 139 6 14 118 1 0 255 0 2 85 4 3 154 0 15 6 1 0 37 318 0 56 0 3 53 3 0 245 0 2 35 1 2 50 3 0 14 3 0 21 1 0 9 1 0 11 4 0 9 2 0 44 0 1 7 1 0 17 1 0 44 1 0 16 1 0 4 18 8 11 15 0 8 9 6 13 2 0 24 1 0 21 1 0 13 1 0 6 3 0 10 chain 82280 chr8 146364022 + 110332044 110333093 MER11C 1089 - 25 1089 42641 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 304 1 0 65 0 4 62 0 9 99 2 1 146 chain 548533 chr8 146364022 + 110382739 110388877 L1PA4 6152 - 1 6152 1638 535 0 5 634 0 1 1418 0 1 770 0 2 242 0 2 221 0 1 1951 1 2 366 chain 30267 chr8 146364022 + 110446114 110446486 L1PA7 6471 + 6083 6465 84019 183 0 13 180 3 0 6 chain 8003 chr8 146364022 + 110503416 110503603 MER3 215 + 18 190 171036 45 17 16 32 9 0 30 11 0 7 13 19 23 chain 30436 chr8 146364022 + 110510311 110510629 AluYb8 318 - 0 318 83561 318 chain 192781 chr8 146364022 + 110523425 110525536 L1PA3long 6157 - 0 2111 19788 724 0 1 48 1 0 1338 chain 12994 chr8 146364022 + 110558790 110558972 MER30 238 + 37 238 148266 70 4 0 7 6 29 95 chain 33063 chr8 146364022 + 110567228 110567611 L1PA4 6152 - 14 398 79110 113 0 1 270 chain 5350 chr8 146364022 + 110637044 110637141 MER58A 224 + 49 143 191547 62 11 10 15 2 0 7 chain 40280 chr8 146364022 + 110641806 110642238 L1PA2 6032 - 434 866 68903 432 chain 38602 chr8 146364022 + 110642238 110642665 L1PA2 6032 + 5604 6029 71290 4 0 1 405 3 0 15 chain 56610 chr8 146364022 + 110654016 110654680 L1PA7 6471 + 5794 6466 54774 5 1 0 403 1 0 51 0 9 53 0 1 150 chain 305305 chr8 146364022 + 110684462 110688205 L1P3 4156 + 0 4139 13198 251 1 0 68 5 4 79 2 0 6 4 6 932 0 3 342 1 4 329 6 2 230 0 2 143 4 396 296 0 4 486 0 2 235 8 7 280 2 0 9 2 1 22 chain 119202 chr8 146364022 + 110694355 110695923 THE1C-int 1605 + 0 1605 31336 13 2 4 428 4 11 296 5 4 192 1 0 4 8 9 49 0 24 36 13 14 55 3 7 459 chain 16971 chr8 146364022 + 110768097 110768438 L1PA15 4387 - 60 384 135665 12 5 4 23 37 21 50 14 9 17 9 8 53 6 11 15 1 0 88 0 2 11 chain 519907 chr8 146364022 + 110783173 110789324 L1PA6 6164 - 11 6164 5171 588 0 2 4 0 1 308 3 0 207 0 1 398 0 1 1120 7 6 325 6 8 859 3 0 143 1 0 25 1 2 194 2 1 453 0 1 53 0 1 651 0 1 111 2 3 274 1 0 412 chain 15620 chr8 146364022 + 110796317 110796532 L1PA10 4194 + 3949 4161 139523 156 13 11 34 1 0 11 chain 3071 chr8 146364022 + 110800730 110800780 Tigger3b 1229 + 504 552 223561 11 5 3 34 chain 27504 chr8 146364022 + 110802149 110802587 L1MA1 4479 + 3767 4190 94639 59 1 0 20 2 0 13 1 0 18 0 7 63 1 0 5 3 0 47 0 1 71 7 6 11 1 0 19 2 0 33 3 2 9 1 0 7 4 2 12 7 0 18 chain 22260 chr8 146364022 + 110803584 110803831 L1PA5 6144 + 5889 6135 119071 196 1 0 50 chain 179986 chr8 146364022 + 110832078 110834074 L1PA3long 6157 - 5 2017 20992 880 0 14 896 0 2 220 chain 83463 chr8 146364022 + 110834074 110835000 L1PA3long 6157 + 3208 4134 42095 926 chain 292520 chr8 146364022 + 110838923 110842148 L1PA3long 6157 + 2917 6142 13860 266 0 1 152 1 0 2806 chain 100408 chr8 146364022 + 110849560 110850742 L1PA7 6471 + 5278 6470 36652 273 0 9 61 1 0 77 0 2 770 chain 553388 chr8 146364022 + 110870868 110877007 L1PA3long 6157 + 6 6157 1022 642 0 1 899 0 11 4598 chain 4433 chr8 146364022 + 110886190 110886243 U2 167 - 114 167 201543 53 chain 46164 chr8 146364022 + 110912350 110912889 L1PA5 6144 - 0 538 61883 235 5 4 299 chain 28152 chr8 146364022 + 110950322 110951265 MLT2A1 477 - 1 477 92455 47 12 0 8 524 67 30 1 0 80 0 1 39 3 1 30 1 5 27 6 7 74 1 0 60 chain 422828 chr8 146364022 + 110951278 110956737 HERVL-int 5654 - 13 5630 9464 210 0 1 309 0 2 425 3 0 31 0 13 15 243 0 211 0 7 46 0 4 433 4 0 761 0 6 1106 3 4 669 11 375 101 23 31 34 0 1 8 0 1 418 0 4 185 7 0 137 0 3 66 chain 25924 chr8 146364022 + 110956786 110957163 MLT2A1 477 - 94 477 100324 45 0 1 14 1 0 68 12 15 36 11 9 22 1 5 25 0 1 142 chain 129161 chr8 146364022 + 110958131 110959689 THE1A-int 1579 + 0 1579 28275 131 1 22 347 1 0 836 0 1 242 chain 3226 chr8 146364022 + 110991605 110991679 MIRb 242 + 107 182 220483 36 24 25 14 chain 38475 chr8 146364022 + 111005240 111005740 LTR10D 510 - 0 510 71480 248 10 1 151 1 9 18 11 22 61 chain 11421 chr8 146364022 + 111010252 111010496 L1PB1 5432 - 106 326 154600 14 23 11 21 1 0 43 1 0 18 2 1 45 6 4 11 16 11 9 1 0 24 1 0 8 chain 3504 chr8 146364022 + 111022385 111022425 THE1D 372 + 332 372 215300 40 chain 48137 chr8 146364022 + 111040443 111040972 L1PA4 6152 - 872 1416 60374 267 0 15 262 chain 75570 chr8 146364022 + 111040972 111041833 L1PA4 6152 + 5283 6152 45735 468 0 3 387 0 5 6 chain 55237 chr8 146364022 + 111048127 111048745 L1PA3long 6157 + 5524 6142 55563 618 chain 185084 chr8 146364022 + 111073024 111075890 HUERS-P2-int 2744 + 2 2742 20496 14 6 1 14 2 0 20 0 1 14 0 2 18 2 0 5 1 0 53 6 3 11 39 32 75 3 0 4 1 0 10 136 57 19 0 8 69 10 9 20 13 0 8 3 11 17 3 0 4 2 0 158 0 1 90 7 8 177 35 34 37 0 1 794 1 0 559 7 5 72 7 6 68 2 0 33 3 0 35 2 1 12 1 0 6 1 0 4 1 0 5 13 12 36 3 0 34 1 0 4 1 0 5 9 5 12 13 11 16 chain 110699 chr8 146364022 + 111080325 111081553 L1PA3long 6157 + 4924 6157 34032 161 0 1 946 0 2 22 0 2 99 chain 26746 chr8 146364022 + 111090016 111090315 L1PA4 6152 - 11 310 97175 299 chain 76447 chr8 146364022 + 111091557 111092408 L1PA4 6152 - 1 853 45237 209 0 1 642 chain 22027 chr8 146364022 + 111118416 111118721 L1PA13 3608 + 3165 3479 120113 109 3 1 60 1 0 56 8 5 47 0 16 9 1 0 11 chain 42824 chr8 146364022 + 111132868 111133408 LTR12_ 688 + 0 688 65618 25 1 0 33 0 45 39 1 2 240 0 103 201 chain 51933 chr8 146364022 + 111157441 111158028 L1PA4 6152 - 1 588 57661 587 chain 151126 chr8 146364022 + 111164380 111166041 L1PA3long 6157 + 4291 5957 24457 414 0 1 604 0 4 643 chain 7597 chr8 146364022 + 111194749 111194857 L1MA4A 3247 - 131 237 173565 9 1 0 92 1 0 5 chain 8024 chr8 146364022 + 111197999 111198123 THE1B 368 - 171 294 170914 23 16 15 85 chain 71951 chr8 146364022 + 111199934 111200772 L1PA5 6144 + 5303 6141 47499 838 chain 98370 chr8 146364022 + 111206961 111208173 L1PA7 6471 - 27 1225 37204 163 1 0 571 2 0 60 9 1 30 2 0 25 6 5 343 chain 113276 chr8 146364022 + 111213990 111215362 LTR12C 1709 - 0 1708 33289 406 0 1 4 1 0 15 0 1 54 0 4 106 1 48 62 0 278 125 0 1 138 0 2 66 0 3 394 chain 44099 chr8 146364022 + 111235769 111236305 L1PA7 6471 - 3 538 64088 19 1 0 516 chain 6027 chr8 146364022 + 111236309 111236374 L1PA7 6471 + 5864 5929 185006 65 chain 7539 chr8 146364022 + 111259118 111259242 LTR77 607 + 382 503 173934 22 16 13 32 0 1 4 1 0 49 chain 333461 chr8 146364022 + 111265342 111270593 L1PA7 6471 - 17 6471 12067 323 1 0 512 10 17 46 0 1 150 0 1 71 8 19 135 0 1 229 1 0 9 0 2275 31 1 0 27 0 1 385 2 5 187 1 0 675 6 5 32 0 1 9 0 3 473 1075 2 165 0 2 252 25 0 410 chain 80981 chr8 146364022 + 111268682 111269736 MER11C 1089 - 16 1089 43202 8 0 1 144 1 0 56 0 1 5 0 2 118 0 1 38 1 0 4 1 5 123 34 33 108 6 7 33 1 0 65 0 4 62 0 9 246 chain 168439 chr8 146364022 + 111272209 111274166 L1PA5 6144 + 4173 6138 22230 21 0 2 435 0 5 661 10 14 661 1 0 4 8 6 156 chain 39034 chr8 146364022 + 111334054 111334564 MER9a3 513 - 0 513 70685 78 0 1 172 7 6 72 5 6 158 0 2 18 chain 111475 chr8 146364022 + 111343842 111345098 L1PA4 6152 - 0 1260 33817 460 6 5 211 0 2 172 0 3 407 chain 96900 chr8 146364022 + 111386020 111387091 L1PA5 6144 - 0 1070 37581 172 2 1 897 chain 8783 chr8 146364022 + 111389044 111389148 THE1B-int 1605 + 1495 1599 166753 104 chain 363881 chr8 146364022 + 111398145 111402644 L1PA5 6144 - 4 4228 11265 145 1 18 1226 0 1 515 293 0 2319 chain 7188 chr8 146364022 + 111405488 111405580 L1P4 1494 + 426 518 176154 92 chain 6798 chr8 146364022 + 111407574 111407683 MLT2A2 560 + 279 502 178971 23 2 111 41 2 7 41 chain 88767 chr8 146364022 + 111440161 111441148 L1PA3long 6157 - 602 1589 40093 987 chain 53361 chr8 146364022 + 111441148 111441738 L1PA3long 6157 + 5569 6157 56797 583 2 0 5 chain 19826 chr8 146364022 + 111494153 111494451 THE1D 372 + 47 347 127729 22 9 10 83 29 31 32 1 0 122 chain 78729 chr8 146364022 + 111525911 111526899 L1PA8 5853 - 2029 3016 44073 72 6 7 61 0 1 97 2 0 704 1 0 45 chain 157036 chr8 146364022 + 111526899 111528920 L1PA8 5853 + 3836 5853 23718 22 1 5 9 4 0 152 9 8 22 0 4 271 7 5 69 0 1 606 0 3 120 2 0 340 2 1 90 1 0 44 2 0 70 2 1 61 2 1 19 2 1 92 chain 6801 chr8 146364022 + 111534462 111534548 L1MA3 4352 + 3907 3993 178944 86 chain 25458 chr8 146364022 + 111542296 111542642 THE1B 368 + 7 368 102419 37 14 29 23 0 1 75 1 0 196 chain 105536 chr8 146364022 + 111588827 111590015 L1PA4 6152 - 0 1192 35364 13 0 3 759 1 2 415 chain 21498 chr8 146364022 + 111593958 111594300 THE1B 368 - 1 368 122152 45 0 1 78 35 45 77 13 14 48 0 15 31 2 0 13 chain 4233 chr8 146364022 + 111629567 111629618 L1PA7 6471 + 6410 6461 204123 51 chain 9615 chr8 146364022 + 111657934 111658050 L1PA5 6144 + 6031 6144 162508 108 3 0 5 chain 10283 chr8 146364022 + 111695745 111695964 L1PB1 5432 + 5221 5413 159218 16 1 0 44 1 0 15 1 0 4 20 9 18 13 5 14 2 0 24 1 0 19 5 4 11 1 0 9 chain 3084 chr8 146364022 + 111720400 111720460 LTR29 598 - 537 598 223244 26 15 16 19 chain 44130 chr8 146364022 + 111758253 111759180 MER11C 1089 + 0 1073 64042 55 0 91 106 7 10 57 1 18 123 18 17 22 302 337 53 0 1 183 chain 17812 chr8 146364022 + 111774041 111774369 L1PREC2 3366 + 2641 2947 133367 19 1 0 92 2 0 54 1 0 44 1 0 4 3 0 7 62 49 12 2 0 12 1 2 11 chain 45828 chr8 146364022 + 111789759 111790373 L1PA10 4194 + 3544 4161 62201 157 1 0 4 0 1 14 0 4 287 0 1 33 0 1 70 3 0 6 0 1 27 1 0 11 chain 18501 chr8 146364022 + 111818394 111818612 L1PA7 6471 - 10 228 131492 218 chain 17319 chr8 146364022 + 111830225 111830418 L1PA4 6152 + 5698 5891 134736 193 chain 34847 chr8 146364022 + 111832996 111833457 L1P3 4156 + 3680 4139 76410 63 0 1 254 2 1 18 0 1 89 2 0 7 2 1 24 chain 444807 chr8 146364022 + 111893211 111898776 HERVL-int 5654 + 0 5654 8909 56 20 18 460 0 3 81 0 9 77 3 5 203 0 2 224 0 4 360 1 2 233 0 4 405 0 25 193 0 1 1061 1 3 758 1 23 214 0 1 602 4 0 198 6 4 183 0 1 106 4 0 66 9 33 36 chain 11781 chr8 146364022 + 111899297 111899444 HERVL-int 5654 + 4777 4924 153129 147 chain 15936 chr8 146364022 + 111900764 111901138 MER21A 919 + 28 539 138563 47 30 48 5 2 0 30 75 64 23 22 154 39 2 0 5 0 2 94 chain 20552 chr8 146364022 + 111931810 111932040 L1PA4 6152 + 5921 6151 125467 230 chain 162280 chr8 146364022 + 111936205 111938017 L1PA4 6152 + 4331 6143 23025 1812 chain 175688 chr8 146364022 + 111958217 111960708 MER57-int 2662 - 125 2560 21377 19 28 14 16 13 13 39 17 12 85 2 0 6 5 1 354 0 4 65 5 6 4 0 1 464 5 1 33 0 1 34 7 14 255 3 0 167 1 0 240 11 7 24 2 1 156 0 3 41 2 1 33 59 20 92 2 0 9 5 11 183 0 1 5 chain 506221 chr8 146364022 + 111964393 111969874 L1PA2 6032 + 538 6032 6449 3645 0 13 1836 chain 13626 chr8 146364022 + 111996493 111996701 L1MB5 1630 + 1177 1383 145877 13 24 22 171 chain 171141 chr8 146364022 + 111996825 111998765 L1PA4 6152 - 9 1950 21925 324 1 2 509 0 4 867 10 2 87 0 4 142 chain 4738 chr8 146364022 + 112004598 112004683 MER67D 511 + 0 82 198050 22 16 13 47 chain 40041 chr8 146364022 + 112005976 112006718 L1PB1 5432 - 8 1382 69259 4 1 0 16 1 0 13 1 0 21 1 0 23 3 1 14 8 5 18 17 7 7 1 0 15 1 0 43 1 0 16 2 1 48 32 25 9 1 0 22 10 0 9 58 730 71 0 1 255 chain 115044 chr8 146364022 + 112012785 112014087 L1PA5 6144 - 0 1307 32776 147 5 6 690 0 4 460 chain 22899 chr8 146364022 + 112026962 112028711 THE1B 368 + 0 356 116116 44 10 25 45 1 0 60 1 0 20 1408 3 96 1 0 63 chain 6261 chr8 146364022 + 112027144 112027218 THE1B 368 + 197 271 183082 74 chain 8043 chr8 146364022 + 112028368 112028529 THE1B 368 + 0 174 170792 44 24 39 34 9 7 50 chain 106601 chr8 146364022 + 112052338 112053630 LTR12C 1709 - 1 1709 35091 83 1 0 9 0 1 17 2 136 22 0 1 211 0 4 106 3 1 5 1 0 35 0 2 91 0 278 706 chain 72831 chr8 146364022 + 112112665 112113623 LTR13_ 950 + 0 950 47112 68 8 12 314 3 2 211 14 3 35 1 0 109 2 1 21 7 10 134 1 0 30 chain 4703 chr8 146364022 + 112130837 112130911 MLT2C1 407 + 26 101 198497 52 7 8 15 chain 22327 chr8 146364022 + 112157709 112157975 AluSg7 307 - 32 296 118793 143 2 0 121 chain 30436 chr8 146364022 + 112168260 112168578 AluYb8 318 - 0 318 83560 318 chain 41849 chr8 146364022 + 112169121 112169711 L1PREC2 3366 + 2211 2799 66831 29 1 0 4 1 2 20 20 19 428 1 2 37 2 0 47 chain 2732 chr8 146364022 + 112183646 112183675 L1P3 4156 - 2540 2569 226673 29 chain 178551 chr8 146364022 + 112183675 112185830 L1PA7 6471 + 4297 6466 21115 662 6 0 242 0 19 401 1 0 281 6 11 124 7 8 252 5 1 168 chain 347680 chr8 146364022 + 112191919 112195883 L1PA5 6144 - 0 3972 11677 1014 0 2 241 1 2 95 1 3 745 1 2 664 1 0 4 0 1 120 0 1 175 0 1 902 chain 376727 chr8 146364022 + 112214629 112219303 L1PA7 6471 + 1784 6469 10855 89 0 1 227 0 1 163 16 14 116 0 1 72 1 0 149 0 1 8 0 1 4 4 1 100 1 0 20 1 19 327 0 3 383 2 1 350 0 1 174 1 4 52 3 4 320 0 1 758 1 2 410 6 0 58 3 2 79 0 2 321 11 2 444 chain 29295 chr8 146364022 + 112220541 112220923 MLT2A1 477 - 94 477 87603 183 0 4 16 1 2 8 4 1 36 1 0 133 chain 40460 chr8 146364022 + 112231153 112231687 LTR19B 566 + 0 566 68651 89 8 0 316 13 16 58 9 46 41 chain 45555 chr8 146364022 + 112244204 112244762 L1PA7 6471 - 2 559 62453 10 2 0 358 0 1 188 chain 187617 chr8 146364022 + 112244843 112247490 MER4-int 2692 + 4 2692 20281 7 1 0 25 2 0 53 0 1 9 2 0 7 17 14 340 2 3 144 0 1 4 1 4 98 5 4 47 14 17 281 1 4 35 1 0 293 0 16 17 0 18 15 10 16 73 0 4 119 1 0 11 1 0 46 0 2 7 1 0 15 28 33 102 1 0 116 11 9 249 3 1 16 14 8 146 0 1 179 11 12 66 chain 22998 chr8 146364022 + 112284057 112284335 AluY 311 + 0 282 115628 41 0 6 76 1 0 10 1 0 149 chain 98024 chr8 146364022 + 112284953 112286394 L1PB1 5432 - 31 1446 37271 9 1 0 22 1 0 24 2 0 14 13 10 14 18 7 6 1 0 12 7 6 40 1 0 16 2 1 51 2 0 11 16 11 13 1 0 17 3 0 12 1 2 233 0 1 137 11 18 6 0 2 73 4 0 11 0 1 175 9 7 59 1 0 23 0 1 64 0 1 305 chain 18290 chr8 146364022 + 112363169 112363534 THE1D 372 + 0 372 132102 144 94 102 24 4 5 32 7 5 60 chain 6420 chr8 146364022 + 112375909 112375981 THE1A 353 - 0 72 181862 72 chain 39910 chr8 146364022 + 112419639 112420144 L1PA8A 6298 - 7 514 69441 257 0 2 149 0 8 7 11 3 81 chain 52529 chr8 146364022 + 112421069 112421680 L1PA3long 6157 - 8 620 57277 309 0 1 302 chain 4549 chr8 146364022 + 112430263 112430379 L1PB1 5432 + 5315 5422 200225 7 2 0 10 1 0 14 2 0 24 9 8 14 1 0 6 1 2 6 2 0 12 1 0 4 chain 101204 chr8 146364022 + 112433240 112434788 L1PB1 5432 - 41 1549 36466 21 1 0 23 62 47 4 1 0 15 1 0 43 8 7 10 3 1 48 36 29 5 1 0 24 13 11 209 0 1 8 1 0 81 1 0 102 1 0 76 3 0 174 0 1 391 0 1 4 1 0 13 3 0 50 18 0 24 5 6 15 14 29 35 chain 93500 chr8 146364022 + 112435563 112436795 THE1B-int 1605 + 339 1600 38510 94 0 25 224 1 0 87 1 0 5 11 12 240 4 8 448 9 10 108 chain 30205 chr8 146364022 + 112436968 112437285 AluYb8 318 + 0 317 84177 317 chain 10263 chr8 146364022 + 112443996 112444111 L1PA7 6471 + 6353 6468 159314 115 chain 23887 chr8 146364022 + 112497420 112497699 L1PA4 6152 + 5874 6152 110978 164 0 1 108 2 0 5 chain 27845 chr8 146364022 + 112500006 112500374 L1P3 4156 - 773 1142 93541 220 4 5 144 chain 105513 chr8 146364022 + 112507963 112509223 L1PA7 6471 + 5176 6468 35367 151 0 14 41 0 9 383 0 12 433 2 0 138 1 0 111 chain 185478 chr8 146364022 + 112521676 112523855 L1PA5 6144 + 3953 6143 20467 8 0 1 116 4 16 247 0 4 797 13 0 149 0 4 139 1 4 705 chain 21189 chr8 146364022 + 112550625 112550969 THE1C 375 + 0 350 123243 81 3 2 103 35 41 16 13 14 93 chain 143582 chr8 146364022 + 112567574 112569761 L1PA8 5853 - 0 1953 25546 93 1 0 13 346 7 49 14 12 26 1 0 44 4 2 43 1 0 182 0 1 31 0 1 5 0 2 39 1 8 285 2 0 22 0 1 11 0 101 74 2 1 764 0 1 49 0 1 85 chain 8017 chr8 146364022 + 112584048 112584137 MER1A 529 - 100 189 170951 89 chain 21536 chr8 146364022 + 112586059 112586328 AluSp 311 - 23 291 122020 156 1 0 112 chain 67657 chr8 146364022 + 112587382 112588171 L1PA5 6144 - 6 798 49384 141 0 1 190 1 2 109 0 1 348 chain 19139 chr8 146364022 + 112594936 112595194 L1PA10 4194 - 33 287 129714 11 1 0 34 3 0 209 chain 45830 chr8 146364022 + 112605596 112606182 LTR12_ 688 - 7 639 62197 44 0 23 101 1 0 350 1 0 5 6 31 78 chain 75954 chr8 146364022 + 112606182 112607390 L1PB1 5432 - 32 1170 45509 9 1 0 21 1 0 24 2 0 14 8 5 19 9 0 11 4 1 15 1 0 44 1 0 16 2 1 44 13 11 9 4 0 10 1 0 12 1 0 20 43 11 285 16 14 187 4 8 33 0 1 63 0 4 19 0 1 51 17 1 174 chain 35055 chr8 146364022 + 112636085 112636767 LTR1 825 - 7 642 76107 21 1 0 65 0 1 38 1 0 63 9 10 81 7 5 111 0 13 17 187 129 81 chain 67090 chr8 146364022 + 112640415 112641525 L1PB1 5432 + 4329 5417 49621 224 13 22 51 2 0 43 0 1 109 2 3 20 1 9 60 1 0 232 3 0 14 64 53 50 2 1 15 1 0 44 1 0 12 59 43 11 2 0 24 1 0 21 1 0 13 1 0 13 chain 380274 chr8 146364022 + 112644318 112648491 L1PA3long 6157 + 1980 6157 10747 3069 0 3 414 0 1 690 chain 21325 chr8 146364022 + 112652626 112652879 AluSp 311 + 42 296 122770 15 0 1 238 chain 15015 chr8 146364022 + 112655540 112655792 LTR12C 1709 + 945 1203 141279 163 41 10 15 6 43 27 chain 3317 chr8 146364022 + 112655793 112655911 LTR12C 1709 + 837 1037 158570 35 65 147 18 chain 3876 chr8 146364022 + 112655847 112655893 LTR12C 1709 + 654 700 191071 46 chain 52423 chr8 146364022 + 112666962 112667546 L1PA5 6144 + 5549 6132 57338 261 0 1 160 2 0 161 chain 28373 chr8 146364022 + 112677055 112677370 AluYa5 310 + 0 310 91687 118 5 0 192 chain 2935 chr8 146364022 + 112678051 112678087 MER31B 477 + 0 36 226420 36 chain 80426 chr8 146364022 + 112678087 112679087 MER11A 1151 - 0 1151 43418 81 0 6 92 0 1 105 0 47 16 1 0 244 1 0 20 0 1 94 8 9 140 1 0 63 6 5 73 0 99 55 chain 193390 chr8 146364022 + 112685500 112688080 L1PA8 5853 - 6 2591 19745 87 1 0 19 7 6 40 2 0 5 1 2 9 4 3 68 2 0 44 1 0 101 1 0 74 4 2 213 5 4 154 2 1 5 1 0 209 3 1 61 1 0 362 8 7 26 6 4 150 11 11 218 1 15 11 10 11 18 6 7 194 0 5 6 1 0 99 0 4 329 chain 28019 chr8 146364022 + 112733345 112733706 THE1D-int 1627 - 5 369 92935 67 1 0 7 0 1 250 0 3 36 chain 4491 chr8 146364022 + 112770749 112770815 LTR12C 1709 - 539 652 200894 37 1 48 28 chain 21104 chr8 146364022 + 112774844 112775107 L1PA7 6471 + 6218 6469 123542 64 6 0 174 6 0 13 chain 31755 chr8 146364022 + 112776796 112777186 L1PA7 6471 + 6080 6470 81241 228 14 14 148 chain 10236 chr8 146364022 + 112815101 112815268 MSTB 430 - 244 424 159442 22 26 39 119 chain 111827 chr8 146364022 + 112834596 112836075 LTR12C 1709 - 0 1709 33710 50 4 135 48 1 0 4 38 9 21 1 2 99 0 1 18 13 13 81 13 17 93 4 2 8 1 0 271 1 0 12 0 119 130 2 0 79 0 1 72 0 1 133 0 8 67 3 4 103 2 1 107 chain 4062 chr8 146364022 + 112843836 112843885 MADE1 96 + 47 96 206455 49 chain 31680 chr8 146364022 + 112850359 112850705 L1PA4 6152 - 1 347 81355 346 chain 15309 chr8 146364022 + 112860918 112861134 MLT2A1 477 - 0 259 140468 35 8 53 66 1 0 44 3 2 59 chain 55274 chr8 146364022 + 112886405 112887034 L1PA4 6152 + 5524 6151 55540 374 2 0 253 chain 41818 chr8 146364022 + 112895315 112895879 MER41A 554 + 0 554 66868 248 14 15 233 19 8 50 chain 26200 chr8 146364022 + 112926178 112926531 THE1A 353 + 0 353 99202 47 0 1 46 1 0 17 0 2 6 8 6 228 chain 36341 chr8 146364022 + 112943340 112943808 LTR3A 482 + 0 478 74444 156 7 16 281 0 1 24 chain 131356 chr8 146364022 + 112950145 112951640 L1PA5 6144 + 4629 6126 27789 22 3 1 639 0 4 831 chain 52948 chr8 146364022 + 112956728 112957369 L1PA7 6471 - 1 637 57048 6 2 0 5 3 0 625 chain 9503 chr8 146364022 + 112972491 112972613 MER85 139 - 0 131 163054 37 3 12 82 chain 192281 chr8 146364022 + 112997524 112999998 L1P3 4156 + 3 2496 19840 95 5 7 48 3 0 6 11 14 78 2 1 68 1 0 54 0 11 395 0 2 494 6 7 121 17 18 4 1 0 280 5 6 43 1 2 39 1 0 399 0 5 29 1 0 267 chain 302942 chr8 146364022 + 113000000 113003812 L1PA7 6471 + 2501 6342 13283 131 0 3 174 19 28 589 2 4 41 0 4 22 1 0 45 0 9 57 0 1 7 0 1 6 1 0 13 0 1 193 10 0 100 15 16 64 0 1 655 0 8 124 15 5 317 0 1 91 0 1 101 0 1 87 0 2 210 0 3 83 1 4 638 chain 14183 chr8 146364022 + 113019436 113019615 L1PA15 4387 - 762 937 143947 90 4 0 85 chain 12236 chr8 146364022 + 113043515 113043647 L1PA5 6144 - 12 144 151276 132 chain 78001 chr8 146364022 + 113054910 113055864 L1PA7 6471 - 6 968 44510 18 0 1 523 7 11 295 0 3 111 chain 69755 chr8 146364022 + 113065017 113066010 MER11A 1151 - 0 1144 48489 36 0 4 127 0 1 16 10 9 41 6 15 19 16 21 18 0 26 122 6 12 140 6 7 87 9 10 112 0 2 7 0 1 24 4 0 48 1 3 15 1 0 74 0 99 48 chain 61942 chr8 146364022 + 113078550 113079246 L1PA4 6152 - 9 705 51924 696 chain 29977 chr8 146364022 + 113085435 113085756 AluYb8 318 + 0 318 84883 132 3 0 186 chain 28217 chr8 146364022 + 113089463 113090024 L1PB3 3668 - 3108 3665 92244 76 7 8 171 11 15 59 0 4 38 20 22 5 2 0 25 98 87 22 12 10 15 chain 3805 chr8 146364022 + 113092204 113092270 L1PBa 3878 - 3338 3403 210306 19 14 13 33 chain 100315 chr8 146364022 + 113094448 113095724 LTR12C 1709 - 0 1709 36690 84 5 4 200 0 10 183 0 4 7 1 8 76 0 47 74 0 278 242 5 1 72 30 119 247 0 3 50 chain 271249 chr8 146364022 + 113096772 113100178 L1PA7 6471 + 3034 6461 15124 450 1 2 8 1 0 55 0 4 26 0 2 244 8 5 179 1 2 87 0 1 85 1 0 90 1 0 489 3 12 60 0 1 113 1 0 163 0 4 80 0 1 8 1 0 416 7 10 71 2 0 6 8 10 578 19 18 137 0 3 7 chain 145777 chr8 146364022 + 113106872 113108550 L1PA5 6144 + 4458 6143 25208 160 6 4 139 1 2 512 0 4 12 0 4 848 chain 7269 chr8 146364022 + 113117373 113117564 MER47A 366 - 100 346 175664 53 78 134 45 1 0 14 chain 12862 chr8 146364022 + 113131755 113131902 L1PA5 6144 + 5343 5490 148788 147 chain 58030 chr8 146364022 + 113131902 113132555 L1PA5 6144 + 5491 6144 53963 653 chain 107739 chr8 146364022 + 113144739 113146038 LTR12C 1709 + 0 1709 34792 262 0 1 311 7 6 70 0 278 184 9 6 106 0 4 286 1 132 63 chain 15918 chr8 146364022 + 113176700 113176931 L1PA8 5853 - 32 259 138612 58 2 3 19 2 1 52 1 0 9 5 4 66 2 0 15 chain 51772 chr8 146364022 + 113192545 113193142 L1PA4 6152 - 0 604 57773 6 0 5 322 0 2 269 chain 8416 chr8 146364022 + 113193148 113193243 L1PA4 6152 + 5452 5547 168744 95 chain 361063 chr8 146364022 + 113195881 113200257 L1PA5 6144 + 2038 6138 11339 772 0 1 253 280 0 87 1 0 7 1 0 121 0 1 2017 0 4 837 chain 21871 chr8 146364022 + 113196910 113197158 L1PA3long 6157 + 5894 6142 120748 248 chain 299773 chr8 146364022 + 113208506 113212091 HERVH-int 3825 + 0 3825 13438 333 1 0 199 5 0 38 1 0 10 1 0 10 4 0 12 6 0 10 9 26 19 23 22 19 2 1 10 0 2 2 3 0 43 0 1 7 0 2 12 0 1 21 0 1 777 1 0 108 3 30 1370 0 3 31 8 218 487 chain 24944 chr8 146364022 + 113221655 113221953 AluY 311 + 0 297 105083 17 1 0 106 3 1 99 0 2 72 chain 30077 chr8 146364022 + 113225872 113226191 AluYb8 318 - 0 318 84567 192 1 0 126 chain 307888 chr8 146364022 + 113230061 113234262 L1PA7 6471 + 3 6297 13091 163 2 3 239 1 2 39 10 11 271 1 0 103 0 3 267 0 7 64 0 1 50 0 2356 215 0 9 55 13 23 19 0 1 34 0 2 70 1 0 561 1 0 7 0 1 239 0 4 844 0 1 131 300 0 102 6 2 211 0 3 19 3 4 67 2 0 91 chain 25408 chr8 146364022 + 113233470 113233761 AluY 311 + 7 299 102641 125 0 1 166 chain 23521 chr8 146364022 + 113239997 113240276 AluY 311 + 8 288 113009 124 0 1 155 chain 31607 chr8 146364022 + 113251118 113251526 MER57A1 433 + 0 410 81472 61 1 2 222 1 2 123 chain 12636 chr8 146364022 + 113269345 113269534 L1PA7 6471 + 4316 4482 149700 119 25 2 45 chain 126382 chr8 146364022 + 113269534 113271365 L1PA7 6471 + 4483 6003 28981 471 0 1 391 0 1 273 1 4 308 316 0 71 chain 36605 chr8 146364022 + 113271382 113271820 L1PA7 6471 + 6023 6461 74090 438 chain 25443 chr8 146364022 + 113285681 113285972 AluY 311 + 9 300 102481 291 chain 3967 chr8 146364022 + 113307183 113307231 L1PB1 5432 - 39 86 207879 23 1 0 24 chain 20320 chr8 146364022 + 113332722 113332961 L1PA5 6144 - 2 236 126177 151 1 0 20 4 0 63 chain 4112 chr8 146364022 + 113335867 113335921 MLT1C 463 + 408 463 205749 9 0 1 45 chain 4482 chr8 146364022 + 113351383 113351543 MER51A 677 + 176 308 200994 16 20 0 7 10 0 36 23 6 12 20 39 16 chain 113200 chr8 146364022 + 113369177 113370675 THE1B-int 1605 + 0 1605 33317 430 1 26 280 14 78 335 2 12 36 1 0 4 15 20 201 2 6 177 chain 18299 chr8 146364022 + 113378926 113379187 HSMAR2 1300 + 1009 1276 132079 60 1 0 85 1 6 63 0 1 26 3 4 22 chain 28919 chr8 146364022 + 113381694 113382107 L1PA8 5853 + 5447 5853 89373 117 1 0 33 13 11 71 1 0 8 7 6 47 2 1 13 10 9 90 chain 7114 chr8 146364022 + 113430485 113430561 L1PA4 6152 - 0 76 176654 76 chain 3393 chr8 146364022 + 113441380 113441417 L1MA8 2339 - 183 220 217222 37 chain 11902 chr8 146364022 + 113496927 113497126 Tigger4a 237 + 0 176 152595 19 8 9 29 0 1 18 13 0 75 1 0 15 11 0 10 chain 280355 chr8 146364022 + 113546208 113549408 L1PA3long 6157 + 2858 6157 14621 29 51 142 338 10 4 665 0 10 1259 2 3 189 0 3 657 chain 554853 chr8 146364022 + 113606234 113612259 L1PA2 6032 + 1 6027 839 566 0 4 139 1 0 4469 0 1 837 3 0 10 chain 13973 chr8 146364022 + 113635748 113635898 L1PA2 6032 - 5 155 144671 150 chain 140895 chr8 146364022 + 113674254 113675867 L1PA3long 6157 + 4499 6149 26012 142 1 0 749 1 0 159 0 39 561 chain 12487 chr8 146364022 + 113707062 113707354 L1P2 5180 + 4 294 150307 91 91 90 62 18 17 30 chain 201932 chr8 146364022 + 113707638 113709969 L1PA5 6144 + 3809 6142 19071 535 0 4 138 0 4 887 1 0 467 23 12 125 1 6 8 5 0 97 0 6 44 chain 50276 chr8 146364022 + 113711012 113711663 LTR12 884 + 0 884 58802 74 0 132 142 24 0 20 0 22 160 0 103 231 chain 349958 chr8 146364022 + 113725625 113730307 L1PA8 5853 + 1160 5853 11609 99 0 1 118 7 10 161 1 0 151 1 0 5 0 2 44 6 7 254 9 6 229 0 1 198 1 3 19 6 5 63 0 2 63 2 0 233 4 6 48 2 1 24 0 1 85 17 16 146 11 12 48 4 3 759 0 1 144 12 13 176 27 25 376 0 7 284 1 0 8 0 1 164 0 5 9 0 1 367 1 0 45 2 0 70 1 0 9 1 0 52 2 1 19 1 0 93 chain 27678 chr8 146364022 + 113759922 113760215 AluYd8 298 + 0 293 94120 293 chain 14913 chr8 146364022 + 113767623 113767870 THE1C 375 + 144 373 141594 9 16 0 33 10 9 156 7 6 16 chain 85015 chr8 146364022 + 113784402 113785371 LTR5_Hs 974 + 0 969 41507 969 chain 44338 chr8 146364022 + 113798969 113799506 L1PA7 6471 - 2 543 63776 144 0 1 38 0 3 355 chain 12377 chr8 146364022 + 113805868 113806145 MER57B2 428 - 133 428 150727 75 15 10 35 18 0 8 45 88 46 12 10 23 chain 54822 chr8 146364022 + 113825306 113826014 LTR30 714 - 2 714 55820 157 4 0 60 7 10 27 8 9 64 6 11 119 1 0 40 1 0 165 0 1 49 chain 345910 chr8 146364022 + 113832884 113837601 L1PA8 5853 - 0 5070 11731 15 0 1 77 1 0 16 6 5 5 1 0 23 48 63 9 11 0 31 2 0 44 1 0 189 0 1 162 6 8 81 0 2 8 22 19 8 0 2 75 2 0 61 19 20 718 6 4 292 0 4 25 0 2 5 19 7 17 8 30 163 0 2 89 0 1 32 1 0 4 0 1 413 1 0 22 0 315 764 1 0 19 0 20 224 1 0 865 1 3 104 chain 23472 chr8 146364022 + 113881696 113881981 L1PA8 5853 + 5277 5564 113263 29 1 3 255 chain 3690 chr8 146364022 + 113881982 113882026 L1PA8 5853 + 5564 5608 212077 44 chain 9997 chr8 146364022 + 113882028 113882160 L1PA8 5853 + 5608 5740 160593 63 2 0 5 0 1 10 1 2 51 chain 7623 chr8 146364022 + 113882183 113882269 L1PA8 5853 + 5761 5847 173393 86 chain 193630 chr8 146364022 + 113885895 113888322 L1PA7 6471 - 2755 5185 19726 161 3 7 45 2 0 75 0 2 406 0 3 124 0 4 58 1 3 6 1 0 185 15 0 584 1 5 6 4 0 289 1 0 65 16 19 250 7 10 35 1 2 86 chain 217524 chr8 146364022 + 113888322 113892305 L1PA7 6471 + 3721 6466 18030 21 6 7 260 2 0 79 3 2 203 0 75 592 308 0 101 1 0 355 0 1 374 0 1 344 0 1 22 1005 0 307 chain 70383 chr8 146364022 + 113940694 113941455 L1PA2 6032 - 179 941 48222 680 0 1 81 chain 14793 chr8 146364022 + 113941455 113941616 L1PA2 6032 + 5868 6029 141952 161 chain 6851 chr8 146364022 + 113954202 113954418 L1MC2 1988 - 162 383 178573 26 0 7 17 34 35 21 6 5 10 54 52 48 chain 5344 chr8 146364022 + 113975086 113975221 MER5A1 166 + 0 137 191611 19 23 24 30 22 23 41 chain 29981 chr8 146364022 + 114032110 114032423 AluYb8 318 + 0 313 84866 313 chain 41679 chr8 146364022 + 114072224 114072670 L1HS 6032 - 3 448 67052 140 1 0 305 chain 148021 chr8 146364022 + 114099470 114101099 L1PA3long 6157 + 4529 6157 24875 653 1 0 975 chain 21669 chr8 146364022 + 114174522 114174822 AluSp 311 + 0 304 121504 34 14 24 222 6 0 24 chain 6704 chr8 146364022 + 114217679 114217781 Tigger3 1187 + 898 1120 179662 10 0 122 57 3 1 32 chain 32794 chr8 146364022 + 114224749 114225122 L1PA5 6144 + 5766 6139 79542 373 chain 4450 chr8 146364022 + 114231156 114231209 THE1B 368 - 315 368 201342 53 chain 18229 chr8 146364022 + 114265463 114265672 L1PA5 6144 - 1 213 132258 13 0 3 196 chain 32701 chr8 146364022 + 114272850 114273282 L1PA8 5853 - 0 476 79686 90 5 4 18 16 63 40 0 1 27 2 0 46 1 0 187 chain 153091 chr8 146364022 + 114281409 114283210 L1PA5 6144 + 4353 6139 24218 516 4 1 427 0 4 171 15 0 509 1 6 6 5 0 56 2 1 89 chain 155976 chr8 146364022 + 114292119 114294301 L1PB1 5432 - 2180 4362 23861 4 0 1 353 0 3 57 1 0 241 4 7 41 11 15 30 1 0 58 9 10 337 2 0 7 1 2 19 0 1 12 12 0 62 19 17 67 0 3 228 18 23 51 0 6 179 19 11 5 2 0 7 1 0 55 0 1 38 1 0 159 0 1 71 chain 150015 chr8 146364022 + 114294301 114296449 L1PB1 5432 + 3310 5420 24580 318 8 1 208 0 2 117 1 0 348 0 1 304 0 4 16 5 1 65 0 1 7 1 3 288 3 4 103 15 5 8 1 0 24 1 0 9 16 11 11 3 1 46 46 45 16 8 7 12 2 0 5 0 3 7 9 0 9 15 12 14 3 1 23 1 0 21 1 0 13 1 0 16 chain 49049 chr8 146364022 + 114307962 114308520 L1PA5 6144 + 5570 6128 59712 558 chain 209220 chr8 146364022 + 114314883 114317156 L1PA2 6032 + 3760 6032 18547 1379 1 0 893 chain 34116 chr8 146364022 + 114317157 114317539 L1PA3long 6157 + 5774 6156 77459 382 chain 6727 chr8 146364022 + 114321635 114321715 L1PA16 3655 - 77 157 179498 80 chain 21637 chr8 146364022 + 114337482 114337827 THE1B 368 + 2 368 121630 42 0 15 48 1 10 27 55 51 92 0 1 80 chain 28590 chr8 146364022 + 114384880 114385184 AluYb8 318 + 0 303 90783 116 1 0 187 chain 59397 chr8 146364022 + 114463719 114464351 L1HS 6032 - 417 1049 53179 632 chain 38212 chr8 146364022 + 114464351 114464761 L1HS 6032 + 5621 6031 71822 410 chain 49604 chr8 146364022 + 114476889 114477597 L1PA8 5853 + 5151 5853 59317 26 19 18 352 0 2 12 2 1 46 2 0 69 3 2 14 10 9 38 2 1 19 2 1 92 chain 142583 chr8 146364022 + 114488892 114490544 L1PA5 6144 - 1 1662 25714 136 7 6 31 1 2 85 0 6 71 0 1 328 0 1 245 0 1 748 chain 108224 chr8 146364022 + 114510758 114512175 L1PA8A 6298 - 7 1433 34576 96 11 13 614 10 12 57 1 5 556 0 1 72 chain 109221 chr8 146364022 + 114512175 114513576 L1PA8A 6298 + 3344 4747 34391 16 5 2 185 5 1 61 1 0 265 1 2 517 0 9 89 1 0 89 11 12 155 chain 12111 chr8 146364022 + 114522139 114522335 MER4D 903 - 15 212 151760 48 36 37 112 chain 299281 chr8 146364022 + 114523435 114527154 HERVH-int 3825 - 0 3825 13467 303 1 0 184 8 218 31 0 3 1039 0 2 329 6 33 507 1 2 395 1 0 49 2 1 16 83 0 14 64 0 42 22 0 22 0 31 23 2 1 9 2 1 38 5 0 310 0 11 211 chain 37869 chr8 146364022 + 114527164 114527605 LTR7 482 - 8 482 72320 90 0 2 104 0 31 247 chain 31523 chr8 146364022 + 114530337 114530684 L1PA4 6152 - 6 352 81605 144 1 0 202 chain 218211 chr8 146364022 + 114534988 114537541 L1PA3long 6157 - 1 6157 17989 1795 34 3636 407 0 1 4 1 0 153 7 8 152 chain 42895 chr8 146364022 + 114567026 114567539 MER9a3 513 - 0 513 65546 58 3 1 20 0 1 307 0 1 125 chain 16069 chr8 146364022 + 114576558 114576743 L1PA3long 6157 - 4 194 138151 130 0 5 55 chain 199757 chr8 146364022 + 114579523 114581724 L1PA3long 6157 - 0 2203 19226 4 0 1 90 0 1 659 1 0 863 0 1 584 chain 69702 chr8 146364022 + 114585851 114586638 L1PA5 6144 - 0 785 48523 467 2 0 318 chain 23691 chr8 146364022 + 114613251 114613536 AluSc 308 + 23 308 112075 285 chain 101728 chr8 146364022 + 114621790 114622886 L1PA2 6032 - 0 1096 36261 1096 chain 226400 chr8 146364022 + 114622886 114625359 L1PA2 6032 + 2423 4898 17514 1526 1 0 190 0 3 756 chain 372854 chr8 146364022 + 114638057 114643464 L1PB1 5432 + 14 5427 10998 6 1 0 313 0 2 20 12 4 192 28 30 10 0 1 99 8 0 36 0 1 40 10 1 54 0 3 278 1 2 298 0 5 130 10 18 37 5 6 127 5 1 395 51 64 60 0 1 89 3 4 36 0 1 120 4 0 42 1 0 273 13 14 162 1 0 15 20 13 43 1 0 42 1 2 122 27 11 418 5 7 65 2 6 187 0 5 49 0 4 51 5 0 368 0 1 66 5 9 16 0 1 36 0 1 82 0 4 16 15 81 49 10 12 189 34 0 47 1 0 33 1 0 4 0 1 58 1 2 5 12 0 6 0 1 21 2 1 8 1 0 8 0 5 8 2 0 9 1 4 10 0 1 28 20 18 43 1 0 15 24 12 17 2 0 6 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 3573 chr8 146364022 + 114644725 114644831 MER52D 1964 - 712 807 214098 16 8 5 11 37 29 34 chain 4757 chr8 146364022 + 114646225 114646369 MER52D 1964 - 1738 1874 197838 35 74 66 35 chain 15052 chr8 146364022 + 114651805 114651979 L1PA6 6164 - 2 176 141165 174 chain 5470 chr8 146364022 + 114660805 114660871 LOR1b 457 - 11 77 190301 66 chain 51244 chr8 146364022 + 114670771 114671553 LTR12 884 - 0 882 58159 234 20 17 5 0 3 144 16 14 14 0 1 52 0 22 37 0 133 60 64 10 136 chain 52056 chr8 146364022 + 114677269 114677903 L1PA7 6471 - 2 647 57589 239 6 18 81 1 0 307 chain 3531 chr8 146364022 + 114677903 114677943 LTR77 607 - 473 513 214852 40 chain 60354 chr8 146364022 + 114685918 114686580 L1PA2 6032 - 677 1339 52653 662 chain 62783 chr8 146364022 + 114686580 114687255 L1PA2 6032 + 5357 6032 51547 675 chain 21826 chr8 146364022 + 114693396 114693639 L1PA4 6152 + 5908 6151 120916 243 chain 21654 chr8 146364022 + 114725226 114725494 L1PA7 6471 + 6195 6464 121558 113 7 8 148 chain 9322 chr8 146364022 + 114728781 114728937 L1PB2 3958 - 120 273 163942 63 2 1 21 13 11 20 1 0 4 0 1 32 chain 28551 chr8 146364022 + 114769620 114769972 THE1A 353 + 0 353 90950 84 0 1 268 chain 100923 chr8 146364022 + 114791732 114792835 L1PA2 6032 - 0 1103 36529 52 0 1 925 1 0 125 chain 42976 chr8 146364022 + 114826495 114827010 L1PA5 6144 - 2 514 65441 7 4 0 329 0 1 175 chain 10500 chr8 146364022 + 114829220 114829347 L1PA6 6164 + 5876 6003 158248 127 chain 7356 chr8 146364022 + 114832555 114832646 L1PA14 3548 - 216 307 175051 91 chain 153986 chr8 146364022 + 114842835 114844724 L1PA7 6471 - 12 1891 24090 485 0 2 6 6 4 259 1 2 80 1 0 177 1 2 286 3 0 142 4 2 61 6 0 371 chain 100398 chr8 146364022 + 114844744 114845947 L1PA7 6471 + 3355 4561 36655 855 0 2 19 0 1 329 chain 23584 chr8 146364022 + 114863494 114863780 AluSp 311 - 19 304 112668 160 1 0 125 chain 24976 chr8 146364022 + 114888177 114888478 AluYa5 310 + 0 296 104930 126 5 0 170 chain 9754 chr8 146364022 + 114891716 114891862 L1P4 1494 - 87 231 161829 17 2 0 9 0 1 30 5 4 83 chain 18632 chr8 146364022 + 114894622 114894868 LTR13A 966 + 715 966 131131 56 1 0 51 3 0 6 3 11 73 0 1 53 chain 79378 chr8 146364022 + 114896406 114897356 LTR13A 966 - 0 966 43875 53 0 1 20 0 1 125 1 0 83 0 1 17 2 0 513 1 17 135 chain 25138 chr8 146364022 + 114915457 114915761 AluY 311 + 0 296 104080 48 0 1 77 7 0 164 2 0 6 chain 460400 chr8 146364022 + 114918548 114923572 L1PA2 6032 - 5 5040 8389 1455 0 11 1208 1 2 2024 1 0 335 chain 88675 chr8 146364022 + 114928206 114929484 L1PA10 4194 - 2619 3877 40119 196 0 6 320 17 2 91 11 13 66 4 0 28 7 6 158 1 2 179 0 4 20 4 2 77 19 14 11 8 6 10 2 1 7 1 0 21 2 0 18 chain 30043 chr8 146364022 + 114946693 114947063 MLT2A1 477 - 110 477 84675 198 5 2 167 chain 434716 chr8 146364022 + 114947074 114953349 HERVL-int 5654 - 7 5654 9199 216 0 1 32 2 0 5 0 2 161 15 5 69 0 1 185 619 0 46 0 5 186 5 9 194 3 0 34 8 0 121 4 8 155 0 11 87 14 15 856 0 1 278 5 1 6 0 2 82 18 0 84 0 3 77 0 1 498 0 1 146 22 23 186 11 12 308 0 1 112 5 0 4 0 1 13 1 9 247 2 1 27 14 0 94 4 5 145 0 5 22 5 4 112 0 1 82 2 1 27 0 1 405 0 3 5 16 13 11 1 2 181 chain 16494 chr8 146364022 + 114947763 114948149 L1PB 1623 + 1234 1585 136940 44 4 5 24 4 0 135 141 111 22 2 0 10 chain 32505 chr8 146364022 + 114953349 114953777 MLT2A1 477 - 0 476 80016 48 0 44 7 0 7 202 5 2 166 chain 8929 chr8 146364022 + 114963114 114963223 HY1 111 + 0 109 165982 109 chain 2998 chr8 146364022 + 114976566 114976599 L1MA7 2200 - 173 206 225052 33 chain 3248 chr8 146364022 + 114991859 114991914 Charlie1a 1436 + 75 130 220053 4 1 0 13 3 4 34 chain 547557 chr8 146364022 + 115012508 115018536 L1PA2 6032 - 0 6020 1760 20 2 0 77 4 0 2485 0 1 284 0 1 2435 3 0 144 3 0 6 0 2 565 chain 89751 chr8 146364022 + 115042392 115044232 L1PA5 6144 - 7 2340 39739 410 795 1288 635 chain 70299 chr8 146364022 + 115042803 115043597 L1PA5 6144 + 4903 5697 48176 794 chain 388027 chr8 146364022 + 115054455 115058685 L1PA2 6032 - 11 4241 10521 4230 chain 9649 chr8 146364022 + 115136688 115136804 MER85 139 + 0 126 162354 89 0 10 27 chain 106983 chr8 146364022 + 115144803 115145985 L1PA3long 6157 - 0 1183 34976 927 1 2 254 chain 53997 chr8 146364022 + 115145985 115146589 L1PA3long 6157 + 4380 4984 56190 604 chain 50739 chr8 146364022 + 115163233 115164280 L1PA8A 6298 - 7 718 58472 71 44 42 123 333 0 83 2 0 128 1 2 262 chain 8231 chr8 146364022 + 115164285 115164391 LOR1b 457 - 303 408 169771 11 1 0 94 chain 61570 chr8 146364022 + 115167237 115168082 L1P3 4156 - 17 844 52086 24 3 2 6 2 0 11 0 1 93 5 1 175 17 0 63 6 7 152 0 1 113 14 17 161 chain 52775 chr8 146364022 + 115168082 115168746 L1PA8 5853 + 5193 5853 57150 331 0 2 38 1 0 44 2 0 71 1 0 61 2 1 19 1 0 93 chain 8275 chr8 146364022 + 115168770 115168861 THE1B-int 1605 - 1455 1546 169544 91 chain 540107 chr8 146364022 + 115174954 115180991 L1PA3long 6157 + 1 6156 2804 7 3 0 144 0 1 436 3 0 179 8 136 2212 5 0 3040 chain 142661 chr8 146364022 + 115189455 115191005 L1PA2 6032 - 2 1553 25702 857 0 1 693 chain 60551 chr8 146364022 + 115191005 115191658 L1PA2 6032 + 3829 4482 52541 653 chain 378411 chr8 146364022 + 115200881 115205339 L1PA6 6164 + 1685 6161 10803 524 3 5 44 1 3 70 1 3 840 1 3 12 0 8 325 2 1 431 0 1 592 6 0 492 1 0 627 0 4 285 0 9 32 0 1 156 5 0 8 chain 24020 chr8 146364022 + 115210456 115210783 THE1C 375 - 42 373 110214 191 0 2 68 12 13 10 1 2 45 chain 22174 chr8 146364022 + 115215984 115216251 AluYc 301 + 28 297 119475 89 1 3 177 chain 10512 chr8 146364022 + 115245390 115245528 L1PA7 6471 - 1 137 158193 11 2 0 125 chain 28995 chr8 146364022 + 115250974 115251278 AluYa5 310 - 6 310 89006 304 chain 39809 chr8 146364022 + 115253832 115254283 LTR7 482 + 0 482 69618 264 0 31 187 chain 269290 chr8 146364022 + 115254285 115257596 HERVH-int 3825 + 0 3816 15217 212 0 11 309 5 0 32 8 7 9 1 0 9 25 15 10 0 17 25 1 0 30 22 1 34 22 9 49 1 0 220 0 290 396 4 31 1376 0 3 25 8 218 13 6 0 6 4 10 449 chain 36587 chr8 146364022 + 115258863 115259307 LTR7 482 + 0 477 74115 235 0 31 153 12 14 44 chain 9161 chr8 146364022 + 115271306 115271431 MER85 139 + 2 139 164759 94 0 15 5 3 0 23 chain 39584 chr8 146364022 + 115293926 115294375 LTR7 482 + 0 482 69913 261 0 31 94 0 2 94 chain 295431 chr8 146364022 + 115294377 115298248 HERVH-int 3825 + 0 3816 13677 212 0 11 301 64 0 8 5 0 38 1 0 9 2 1 24 69 0 15 1 0 12 3 0 7 21 0 19 22 0 41 44 1 11 66 4 4 1 0 11 2 1 49 1 0 444 15 0 111 0 1 350 4 31 182 0 3 105 0 4 1060 5 6 4 0 1 39 8 218 467 3 0 11 chain 2409 chr8 146364022 + 115294928 115294954 HERVH-int 3825 + 437 463 220176 26 chain 3647 chr8 146364022 + 115295041 115295110 HERVH-int 3825 + 635 683 189570 22 22 0 19 0 1 6 chain 2749 chr8 146364022 + 115295251 115295286 HERVH-int 3825 + 656 691 229501 35 chain 38817 chr8 146364022 + 115299513 115299962 LTR7 482 + 0 482 70992 248 0 31 111 0 2 90 chain 120546 chr8 146364022 + 115323398 115324824 LTR12C 1709 + 0 1709 30860 300 6 7 343 0 278 184 1 0 5 3 1 106 0 4 21 1 0 320 0 4 136 chain 8698 chr8 146364022 + 115336838 115337004 Tigger2 2703 - 122 292 167210 21 1 3 62 34 36 48 chain 27425 chr8 146364022 + 115337004 115337331 L1PA5 6144 + 5814 6144 94893 182 1 0 133 0 4 11 chain 48284 chr8 146364022 + 115375324 115376116 L1PB2 3958 + 3055 3838 60258 72 7 6 40 0 7 96 0 1 4 4 16 9 3 1 53 2 1 15 5 0 63 2 0 12 4 0 30 10 11 17 1 0 36 1 0 24 0 1 47 1 0 64 6 5 13 8 3 47 2 0 25 5 4 20 4 0 40 chain 3467 chr8 146364022 + 115398881 115398920 LTR12E 1234 + 789 828 215859 39 chain 46700 chr8 146364022 + 115418135 115418810 THE1C-int 1605 - 914 1605 61457 177 4 0 52 11 18 70 0 8 117 19 20 19 6 9 139 7 8 54 chain 22261 chr8 146364022 + 115418810 115419182 THE1C 375 - 0 375 119066 25 1 0 197 16 0 9 0 20 15 52 52 57 chain 30867 chr8 146364022 + 115473726 115474093 L1PA7 6471 - 19 386 82739 367 chain 18725 chr8 146364022 + 115499286 115499667 THE1D 372 + 0 372 130891 13 0 2 17 11 10 12 56 40 34 0 4 52 14 16 25 1 0 91 5 4 12 5 7 33 chain 550190 chr8 146364022 + 115516259 115522280 L1PA2 6032 + 0 6032 1424 36 0 1 119 0 4 201 0 6 348 1 0 3044 0 1 2272 chain 3011 chr8 146364022 + 115532635 115532667 L1MCb 1641 - 1566 1598 224791 32 chain 7236 chr8 146364022 + 115538357 115538449 Tigger7 736 + 294 391 175857 12 0 5 80 chain 39375 chr8 146364022 + 115542512 115543129 L1PB 1623 - 110 725 70209 11 4 0 13 4 1 4 1 0 30 2 1 7 1 0 79 1 0 50 6 9 120 7 11 142 4 13 78 11 4 42 chain 8188 chr8 146364022 + 115581983 115582086 THE1B 368 - 265 368 170026 103 chain 3475 chr8 146364022 + 115582569 115582606 MLT2A2 560 + 2 39 215741 37 chain 535554 chr8 146364022 + 115592620 115598600 L1PA3long 6157 - 10 6157 3507 276 0 31 269 0 1 1216 0 4 1085 0 3 2356 1 129 38 1 0 453 2 1 104 0 1 27 0 1 152 chain 12063 chr8 146364022 + 115610395 115610543 L1PA16 3655 - 142 290 151929 148 chain 27730 chr8 146364022 + 115616753 115617082 L1PA7 6471 + 6132 6461 93936 329 chain 8505 chr8 146364022 + 115618488 115618592 MER47A 366 + 218 322 168267 104 chain 29009 chr8 146364022 + 115623291 115623660 THE1C 375 - 5 375 88942 96 2 0 43 0 2 48 0 1 180 chain 69429 chr8 146364022 + 115636908 115637786 L1PB1 5432 - 1769 2647 48577 316 1 2 210 1 0 241 0 3 57 10 7 42 chain 111288 chr8 146364022 + 115637786 115639544 L1PB1 5432 + 3740 5422 33862 72 0 7 10 13 9 147 0 1 4 25 8 10 9 10 186 0 2 333 6 7 59 0 4 23 10 6 261 0 4 199 149 71 47 2 1 15 1 0 28 2 3 7 0 1 7 0 15 30 2 0 5 1 0 14 3 1 23 1 0 21 1 0 13 1 0 18 chain 41893 chr8 146364022 + 115640182 115640781 LTR14B 630 - 0 606 66764 32 0 1 161 8 0 11 41 11 14 0 9 74 0 25 19 0 11 101 1 0 79 1 0 4 0 1 53 chain 549780 chr8 146364022 + 115643514 115649544 L1PA2 6032 - 0 6031 1476 157 0 1 624 1 0 316 4 2 3657 0 3 1271 chain 93187 chr8 146364022 + 115652356 115653403 L1PA4 6152 - 9 1053 38603 248 4 0 104 0 1 691 chain 140441 chr8 146364022 + 115665267 115666819 L1PA3long 6157 - 4 1558 26081 278 0 3 1237 1 0 36 chain 17868 chr8 146364022 + 115684269 115684568 L1PA8 5853 - 0 284 133198 92 2 1 17 25 15 27 19 17 76 2 0 39 chain 3242 chr8 146364022 + 115714593 115714650 Tigger2 2703 + 824 880 220203 31 7 6 19 chain 19135 chr8 146364022 + 115720847 115721151 THE1B 368 - 62 368 129724 66 1 0 10 1 0 16 0 1 4 5 11 27 1 0 57 12 14 10 1 0 5 3 0 85 chain 114101 chr8 146364022 + 115726889 115728229 L1PA6 6164 + 4819 6160 33073 496 1 0 699 5 7 139 chain 29972 chr8 146364022 + 115731472 115731785 AluYb8 318 + 0 313 84899 313 chain 36179 chr8 146364022 + 115743753 115744202 L1P3 4156 - 17 463 74662 26 1 0 6 2 0 414 chain 11381 chr8 146364022 + 115748458 115748730 L1PB1 5432 + 5176 5426 154777 44 2 1 16 4 3 41 1 0 15 73 58 16 1 0 22 1 0 12 1 0 13 1 0 9 chain 14967 chr8 146364022 + 115749035 115749445 L1PB1 5432 - 9 363 141423 4 1 0 15 1 0 34 1 0 24 105 65 45 1 0 11 6 5 52 2 0 9 27 21 4 1 0 20 3 0 9 6 7 29 chain 11679 chr8 146364022 + 115762261 115762446 MER30 238 - 0 192 153566 27 15 12 59 0 2 17 3 11 64 chain 44622 chr8 146364022 + 115763715 115764356 L1PA8 5853 + 5241 5853 63455 12 1 2 307 1 0 47 2 0 69 3 1 8 2 1 66 34 7 47 12 15 30 chain 41921 chr8 146364022 + 115809081 115809590 MER9a3 513 - 0 513 66730 74 5 6 318 0 1 95 0 2 17 chain 42589 chr8 146364022 + 115813084 115813578 MER9a1 513 + 15 513 65915 430 1 5 63 chain 11927 chr8 146364022 + 115853382 115853532 L1PA5 6144 + 5997 6141 152489 6 3 0 132 3 0 6 chain 39681 chr8 146364022 + 115861047 115861502 L1PA5 6144 + 5688 6144 69783 248 0 1 207 chain 31607 chr8 146364022 + 115866181 115866547 L1PA5 6144 - 5 374 81471 153 0 2 178 0 1 35 chain 36592 chr8 146364022 + 115870079 115870570 L1PA8 5853 + 5368 5853 74106 70 0 1 125 1 0 44 2 0 71 1 0 8 0 6 7 11 4 36 2 1 19 4 3 90 chain 25390 chr8 146364022 + 115887866 115888138 AluYg6 310 - 3 274 102739 165 1 0 106 chain 24299 chr8 146364022 + 115898621 115898930 AluY 311 + 1 300 108662 46 0 1 85 8 1 159 4 0 7 chain 12917 chr8 146364022 + 115912697 115913949 MER51-int 1546 + 4 741 148569 16 19 17 15 62 38 58 2 1 37 918 430 37 4 5 32 7 6 45 chain 17142 chr8 146364022 + 115927678 115927941 L1PA11 4918 + 3616 3877 135196 20 1 0 59 10 13 17 1 2 4 1 0 46 4 0 100 chain 67310 chr8 146364022 + 115962974 115963823 LTR12 884 - 0 884 49523 19 0 10 335 13 17 103 0 22 40 2 1 337 chain 26196 chr8 146364022 + 115978800 115979169 THE1B 368 + 0 368 99219 172 2 1 29 14 13 133 4 5 15 chain 36940 chr8 146364022 + 115993836 115994339 MER9a3 513 + 0 513 73601 17 0 2 158 0 1 80 18 0 16 0 18 4 1 0 96 8 15 26 0 1 79 chain 99803 chr8 146364022 + 115996795 115997928 L1PA4 6152 - 9 1139 36828 511 4 0 276 0 1 342 chain 26574 chr8 146364022 + 115997929 115998230 L1PA4 6152 + 4710 5011 97746 301 chain 41904 chr8 146364022 + 116006447 116007273 MER41A 554 - 9 554 66751 61 10 15 284 286 0 185 chain 77061 chr8 146364022 + 116008551 116009661 MER11A 1151 + 0 1151 44938 85 0 91 51 0 4 63 4 0 37 1 3 109 0 1 94 0 1 142 5 6 148 24 56 11 14 0 18 2 0 4 72 0 43 0 1 183 chain 24319 chr8 146364022 + 116013011 116013324 AluY 311 + 10 310 108547 113 16 3 184 chain 30473 chr8 146364022 + 116020006 116020469 MER4A1 472 - 0 472 83483 63 16 14 68 1 0 52 8 7 41 23 36 191 chain 181001 chr8 146364022 + 116034301 116036431 L1PA6 6164 - 8 2141 20899 137 1 19 7 17 0 166 0 1 119 4 3 389 0 1 271 1 0 935 0 2 83 chain 25124 chr8 146364022 + 116052072 116052361 AluYc3 301 - 12 301 104158 60 2 0 113 1 3 113 chain 17572 chr8 146364022 + 116054905 116055114 L1PA7 6471 - 3 208 134074 7 4 0 198 chain 246769 chr8 146364022 + 116055700 116059622 L1PB1 5432 + 1913 5430 16411 73 15 10 49 0 1 10 19 18 139 12 8 200 5 1 72 6 0 6 4 1 82 0 5 60 43 2 7 0 8 177 8 6 50 0 1 175 4 8 81 302 0 551 2 0 5 3 5 388 0 1 181 0 2 189 6 7 124 13 6 71 1 2 13 1 0 51 6 14 16 0 1 13 4 1 10 18 27 160 0 2 100 44 7 4 1 0 24 1 0 9 17 12 8 2 0 49 6 5 10 8 7 58 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 66344 chr8 146364022 + 116071993 116072806 L1PA7 6471 + 5652 6467 49931 48 1 4 433 5 6 54 1 2 260 3 0 8 chain 39064 chr8 146364022 + 116084276 116084779 LTR2 463 + 0 463 70647 341 52 11 16 0 1 94 chain 41716 chr8 146364022 + 116085266 116085806 MLT2A2 560 + 7 560 67007 196 0 1 195 3 14 47 2 3 97 chain 6620 chr8 146364022 + 116096469 116096642 MER58A 224 + 44 215 180308 39 70 69 50 1 0 13 chain 5181 chr8 146364022 + 116100745 116100809 L1MC1 2226 - 544 608 193218 64 chain 38508 chr8 146364022 + 116107662 116108129 MER41A 554 + 0 467 71427 467 chain 24331 chr8 146364022 + 116137415 116137779 THE1B 368 - 0 368 108482 126 1 0 10 1 0 18 0 4 10 42 44 156 chain 18439 chr8 146364022 + 116148102 116148303 L1PA4 6152 + 5942 6143 131675 201 chain 59693 chr8 146364022 + 116170662 116171624 LTR12D 1347 - 0 943 52997 16 10 0 32 15 19 37 3 5 98 1 0 58 1 0 33 1 0 30 4 0 129 7 10 23 1 21 123 24 0 8 50 12 100 9 8 17 7 38 91 4 5 30 chain 10028 chr8 146364022 + 116179919 116180045 Tigger3a 397 + 174 300 160438 126 chain 34366 chr8 146364022 + 116208501 116208969 HSMAR1 1287 + 0 460 77111 114 18 11 316 1 0 19 chain 22104 chr8 146364022 + 116223994 116224404 MSTC 436 + 18 430 119765 23 56 57 67 0 8 62 53 46 149 chain 40675 chr8 146364022 + 116224481 116224932 LTR7 482 + 0 482 68328 264 0 31 187 chain 292649 chr8 146364022 + 116224934 116228495 HERVH-int 3825 + 0 3825 13850 212 0 11 96 0 1 212 5 0 38 1 0 9 2 1 19 1 0 5 28 0 15 1 0 12 3 41 26 2 1 24 7 6 26 0 1 7 0 2 13 0 3 134 0 3 182 0 19 104 15 0 108 0 1 353 4 31 358 0 1 778 0 1 266 8 218 487 chain 40806 chr8 146364022 + 116229756 116230207 LTR7 482 + 0 482 68163 264 0 31 187 chain 334415 chr8 146364022 + 116238374 116242779 L1PA7 6471 + 2340 6463 12041 296 1 2 46 0 4 409 0 6 400 5 4 84 309 0 21 0 1 32 0 2 37 0 13 36 3 1 201 2 0 624 5 6 390 7 2 485 0 1 181 0 5 71 0 2 596 17 18 147 chain 27684 chr8 146364022 + 116245998 116246289 AluYa5 310 + 4 295 94103 291 chain 21489 chr8 146364022 + 116305688 116306067 THE1D 372 + 5 372 122185 8 0 2 41 22 13 35 0 1 85 0 4 8 31 37 42 22 6 85 chain 50307 chr8 146364022 + 116321127 116321787 THE1A-int 1579 - 916 1579 58787 87 1 0 91 0 1 26 6 7 434 0 2 15 chain 25021 chr8 146364022 + 116321787 116322126 THE1A 353 - 0 353 104681 163 6 6 111 0 14 59 chain 159853 chr8 146364022 + 116330903 116332726 L1PA5 6144 - 1 1831 23359 112 2 1 498 1 3 231 0 5 628 1 2 350 chain 43000 chr8 146364022 + 116332726 116333201 L1PA5 6144 + 3820 4295 65300 475 chain 3466 chr8 146364022 + 116342485 116342525 LTR12C 1709 - 832 872 215884 40 chain 3075 chr8 146364022 + 116350532 116350565 MER58A 224 - 144 177 223450 33 chain 63552 chr8 146364022 + 116377937 116378816 L1PA13 3608 - 140 1009 51218 20 2 0 5 2 0 47 2 0 6 1 0 34 1 0 21 1 0 62 12 10 104 1 0 31 1 0 137 0 1 141 0 1 78 7 8 163 chain 332069 chr8 146364022 + 116382609 116386713 L1P2 5180 + 2 4133 12126 110 12 11 20 0 11 72 3 0 21 1 0 247 6 6 8 1 0 7 1 0 220 0 1 4 1 0 47 8 23 117 0 25 132 0 3 1120 0 2 169 28 7 1302 2 1 445 chain 22303 chr8 146364022 + 116395141 116395430 AluY 311 + 10 299 118900 128 17 17 144 chain 39453 chr8 146364022 + 116399104 116399560 L1PA4 6152 - 0 461 70084 6 0 5 450 chain 27095 chr8 146364022 + 116406553 116406907 THE1B 368 + 0 368 95957 44 8 23 110 1 0 191 chain 38498 chr8 146364022 + 116411010 116411456 L1PA5 6144 + 5695 6144 71439 313 0 1 121 1 3 11 chain 24624 chr8 146364022 + 116455037 116455349 AluY 311 + 0 306 106860 118 3 0 15 1 0 164 2 0 9 chain 22031 chr8 146364022 + 116465254 116465546 AluSg7 307 - 14 307 120104 137 25 26 130 chain 29444 chr8 146364022 + 116488234 116488545 AluYa5 310 - 0 310 86887 184 1 0 126 chain 40707 chr8 146364022 + 116542856 116543313 L1PA5 6144 + 5683 6140 68293 457 chain 26049 chr8 146364022 + 116569145 116569501 THE1B 368 - 0 368 99829 176 2 0 15 6 5 117 7 22 33 chain 61506 chr8 146364022 + 116611563 116612385 L1PA8 5853 - 0 819 52113 92 2 1 19 2 1 45 13 12 24 3 0 51 2 0 46 8 7 23 9 11 325 0 3 103 1 2 54 chain 10491 chr8 146364022 + 116749519 116749646 L1PA5 6144 - 0 127 158281 127 chain 538756 chr8 146364022 + 116765393 116771399 L1PA3long 6157 + 4 6156 3031 148 0 1 587 0 2 35 1 129 222 0 1 419 0 1 91 0 12 71 0 1 98 0 1 691 1 0 1190 0 1 2435 1 0 16 chain 64839 chr8 146364022 + 116797824 116798627 L1PA7 6471 - 5 798 50640 17 1 0 208 5 4 238 0 1 294 2 0 4 7 0 27 chain 20951 chr8 146364022 + 116798627 116798893 L1PA7 6471 + 5410 5675 122971 198 4 6 7 3 0 54 chain 117393 chr8 146364022 + 116808210 116809533 L1PA4 6152 - 1 1330 31999 543 0 1 325 0 4 393 0 1 62 chain 9988 chr8 146364022 + 116827173 116827280 LTR7Y 441 + 334 441 160640 107 chain 285207 chr8 146364022 + 116827280 116830794 HERVH-int 3825 + 0 3762 14341 529 14 8 33 1 0 10 1 0 8 0 1 15 29 0 15 0 37 42 2 1 56 0 1 7 0 2 13 0 3 52 0 3 122 0 1 318 47 29 379 4 31 299 0 10 828 0 1 216 9 11 39 8 218 253 3 9 162 chain 27539 chr8 146364022 + 116831239 116831632 LTR7Y 441 + 0 403 94537 253 71 81 69 chain 27656 chr8 146364022 + 116857269 116857629 THE1B 368 - 12 368 94192 49 2 1 104 2 0 29 2 1 172 chain 75113 chr8 146364022 + 116864725 116865580 L1PA4 6152 - 9 866 45959 141 1 2 556 0 1 157 chain 13775 chr8 146364022 + 116881270 116881485 THE1B 368 + 151 368 145352 18 1 0 44 28 31 124 chain 30591 chr8 146364022 + 116905869 116906230 L1PA5 6144 + 5781 6143 83216 215 0 1 146 chain 116233 chr8 146364022 + 116992630 116994021 L1PA7 6471 + 5088 6468 32363 413 2 0 120 1 0 689 6 0 10 8 6 142 chain 3137 chr8 146364022 + 117030319 117030397 MADE2 80 - 0 78 222231 23 31 31 24 chain 7385 chr8 146364022 + 117034927 117035014 5S 121 - 33 120 174867 87 chain 4702 chr8 146364022 + 117062266 117062338 MER33 330 - 237 307 198502 24 8 6 40 chain 34596 chr8 146364022 + 117078773 117079219 MER57A1 433 + 0 433 76763 45 4 0 231 0 9 9 18 0 139 chain 178791 chr8 146364022 + 117082864 117085855 MER57-int 2662 + 50 2659 21094 14 67 49 75 0 5 120 2 0 38 0 1 18 0 1 5 1 0 127 0 4 75 0 1 90 21 16 180 4 12 65 1 0 132 3 0 5 0 1 2 0 10 211 1 2 34 0 1 25 8 10 57 346 0 223 1 0 18 5 0 221 7 11 29 1 3 5 2 0 112 2 1 21 0 3 249 3 0 10 1 0 82 18 12 38 12 7 23 27 13 26 2 0 6 1 0 34 1 0 9 5 0 33 9 6 28 chain 34243 chr8 146364022 + 117085860 117086314 MER57A1 433 + 0 433 77291 200 23 0 82 0 1 36 0 1 113 chain 27808 chr8 146364022 + 117103511 117103807 AluYa5 310 - 14 310 93670 296 chain 42647 chr8 146364022 + 117147869 117148353 L1PA6 6164 + 5677 6161 65841 484 chain 8827 chr8 146364022 + 117152870 117152975 THE1B 368 + 2 107 166512 105 chain 31152 chr8 146364022 + 117157215 117157654 MLT2A1 477 - 0 471 82254 20 1 0 16 24 46 8 1 0 9 0 7 197 1 5 26 0 1 136 chain 28558 chr8 146364022 + 117163237 117163756 MLT2A1 477 - 78 477 90927 14 4 0 84 15 12 5 0 3 107 122 5 30 0 1 138 chain 7266 chr8 146364022 + 117163467 117163560 MLT2A1 477 - 308 402 175681 26 0 1 67 chain 2224 chr8 146364022 + 117163561 117163587 MLT2A1 477 - 277 303 236315 26 chain 13103 chr8 146364022 + 117175460 117175651 MER30 238 - 4 208 147833 44 8 5 57 5 21 77 chain 39832 chr8 146364022 + 117193611 117194058 L1PA3long 6157 + 5710 6157 69576 447 chain 22225 chr8 146364022 + 117202175 117202417 L1PA3long 6157 - 1738 1980 119240 242 chain 160439 chr8 146364022 + 117202418 117204167 L1PA3long 6157 + 4409 6157 23282 577 1 0 1171 chain 7126 chr8 146364022 + 117228609 117228692 MER2 342 - 132 215 176568 83 chain 58890 chr8 146364022 + 117263318 117264100 LTR12D 1347 + 403 1334 53468 122 13 44 21 1 0 99 5 46 275 13 91 233 chain 8037 chr8 146364022 + 117277716 117277835 MER58A 224 - 11 129 170830 87 9 8 23 chain 11988 chr8 146364022 + 117293377 117293520 MER121 330 + 55 198 152256 143 chain 21411 chr8 146364022 + 117296655 117296912 AluYc 301 - 13 265 122470 44 7 0 122 0 2 84 chain 7345 chr8 146364022 + 117299696 117299785 L1PB4 2604 + 2386 2475 175124 89 chain 19863 chr8 146364022 + 117300348 117300588 AluSc8 310 + 10 263 127610 122 0 3 95 1 11 22 chain 113549 chr8 146364022 + 117309243 117310620 SVA_B 1603 + 0 1589 33212 19 9 0 20 33 13 657 0 241 639 chain 28184 chr8 146364022 + 117318930 117319235 AluYk11 308 - 3 308 92366 305 chain 26278 chr8 146364022 + 117326470 117326874 THE1C 375 - 0 373 98911 25 1 0 14 0 1 24 41 8 82 16 17 104 0 1 97 chain 16498 chr8 146364022 + 117328365 117328639 THE1C 375 - 0 274 136929 18 8 7 137 38 35 39 0 4 34 chain 7402 chr8 146364022 + 117328650 117328743 THE1C 375 - 282 375 174755 93 chain 132144 chr8 146364022 + 117329749 117331595 L1PA11 4918 + 2774 4578 27608 784 0 5 131 12 14 36 48 15 30 0 11 21 0 1 210 1 2 134 0 1 158 6 1 65 2 1 80 3 1 13 1 0 20 4 0 9 36 22 11 5 4 13 2 0 11 chain 516293 chr8 146364022 + 117338753 117344897 L1PA6 6164 + 0 6162 5548 194 1 2 36 5 5 24 5 6 48 21 21 173 2 1 172 5 11 844 0 1 787 1 0 141 0 2 728 0 1 310 0 4 1377 4 1 391 0 1 252 0 6 623 chain 166024 chr8 146364022 + 117357483 117359560 L1PA7 6471 - 6 2050 22511 8 3 0 132 4 5 183 1 2 432 5 6 76 2 1 322 0 1 115 0 1 61 59 15 283 0 4 13 0 1 50 0 1 81 0 4 247 chain 12564 chr8 146364022 + 117393632 117393919 THE1B 368 - 65 366 149990 61 1 0 12 1 0 16 0 4 10 7 10 5 1 0 4 0 1 11 1 0 32 80 90 45 chain 26479 chr8 146364022 + 117398603 117398889 AluY 311 + 20 307 98126 112 0 1 174 chain 14229 chr8 146364022 + 117399621 117399805 THE1C 375 + 0 189 143798 64 11 16 109 chain 14203 chr8 146364022 + 117399817 117399986 L1P2 5180 - 3333 3502 143871 169 chain 85795 chr8 146364022 + 117400177 117401819 THE1C-int 1605 + 0 1587 41229 18 7 9 127 2 2 173 5 10 16 0 1 9 407 415 125 82 1 233 0 4 9 1 2 18 3 4 33 5 8 318 1 0 7 5 7 38 chain 513151 chr8 146364022 + 117402971 117409102 L1PA6 6164 + 0 6149 5869 66 0 1 392 6 5 49 0 1 39 2 1 233 0 17 560 6 14 767 0 3 177 25 0 845 9 10 6 1 0 66 2 0 54 2 0 97 6 5 1085 0 18 167 0 1 1147 0 1 177 7 0 6 1 8 131 chain 506900 chr8 146364022 + 117422584 117428695 L1PA6 6164 + 0 6162 6406 194 1 2 66 12 14 223 10 6 5 0 3 420 0 25 113 12 11 80 0 10 7 10 0 1135 0 1 308 0 12 551 1 0 4 2 1 242 0 1 713 0 1 214 0 4 684 0 1 608 3 10 345 3 4 4 1 0 140 chain 14446 chr8 146364022 + 117443664 117443861 MER2 342 + 149 342 143059 57 8 0 6 0 4 126 chain 9455 chr8 146364022 + 117495590 117495720 L1PA8 5853 - 0 128 163290 93 1 0 19 2 1 15 chain 126921 chr8 146364022 + 117511175 117512735 THE1B-int 1605 - 6 1605 28834 177 0 1 72 0 1 114 0 3 270 5 6 286 0 9 67 5 4 132 0 25 432 chain 26852 chr8 146364022 + 117512735 117513091 THE1B 368 - 0 368 96804 27 0 1 47 1 0 101 2 0 11 10 9 114 1 16 42 chain 9629 chr8 146364022 + 117525118 117525230 L1PA8 5853 + 5742 5853 162441 18 1 0 93 chain 110259 chr8 146364022 + 117543144 117544491 LTR12C 1709 + 0 1709 34138 128 0 1 209 3 46 221 1 0 5 0 1 188 3 319 106 0 4 283 0 1 94 4 1 102 chain 10600 chr8 146364022 + 117546434 117546626 L1PB3 3668 + 3394 3566 157825 84 22 6 11 1 0 8 1 0 24 7 5 34 chain 44569 chr8 146364022 + 117576952 117577541 L1PA8 5853 + 5267 5852 63508 153 10 11 133 1 0 46 2 0 69 11 11 50 2 1 19 1 0 92 chain 20478 chr8 146364022 + 117579189 117579553 L1PB1 5432 + 4956 5422 125689 74 2 129 9 2 0 51 1 0 11 6 5 45 1 0 16 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 13068 chr8 146364022 + 117589709 117589869 L1PA8 5853 - 0 158 147957 93 1 0 19 2 1 45 chain 22949 chr8 146364022 + 117590617 117590919 AluSp 311 + 11 303 115866 281 7 0 6 3 0 5 chain 53597 chr8 146364022 + 117612487 117613100 L1PA4 6152 - 9 630 56614 604 0 8 9 chain 35655 chr8 146364022 + 117633588 117634128 MLT2A2 560 + 7 560 75330 162 40 49 146 6 7 22 1 0 5 14 17 75 0 1 6 2 1 4 0 1 57 chain 77151 chr8 146364022 + 117690241 117691095 SVA_D 2077 + 35 898 44883 12 0 12 149 4 1 689 chain 43005 chr8 146364022 + 117691132 117691994 SVA_F 1814 + 664 1291 65407 47 0 40 25 1 0 12 85 39 28 50 0 61 127 0 32 15 14 251 49 0 61 1 0 17 chain 7737 chr8 146364022 + 117691217 117691302 SVA_F 1814 + 982 1067 84393 85 chain 4551 chr8 146364022 + 117691330 117691380 SVA_F 1814 + 1095 1145 84393 50 chain 7919 chr8 146364022 + 117691441 117691528 SVA_F 1814 + 1205 1291 84393 69 1 0 17 chain 4536 chr8 146364022 + 117691866 117691915 SVA_F 1814 + 988 1037 88240 49 chain 9443 chr8 146364022 + 117691994 117692096 SVA_F 1814 + 1116 1219 88240 98 0 1 4 chain 85273 chr8 146364022 + 117692113 117693071 SVA_E 1901 + 804 1891 41432 8 1 0 5 1 0 110 4 0 39 4 13 116 0 127 38 2 1 630 chain 13542 chr8 146364022 + 117712568 117712755 MER30 238 + 33 226 146202 95 1 10 61 3 0 27 chain 71738 chr8 146364022 + 117715245 117716160 LTR13_ 950 + 0 950 47596 132 7 0 6 9 16 17 1 4 93 0 24 57 0 1 89 3 9 234 0 1 267 chain 106693 chr8 146364022 + 117729428 117731106 L1PB1 5432 + 3756 5422 35065 241 10 9 4 0 1 6 1 0 49 5 7 97 15 16 223 1 3 9 0 1 24 0 1 88 0 2 91 0 1 33 0 15 103 25 26 46 1 9 44 9 7 193 4 1 10 5 0 22 8 6 12 2 0 3 2 0 9 12 10 42 2 1 10 6 5 41 0 45 9 66 1 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 110173 chr8 146364022 + 117732769 117734287 THE1B-int 1605 + 0 1605 34165 14 0 2 21 0 2 74 13 15 51 10 23 20 0 9 60 6 24 117 0 25 88 0 7 11 0 4 128 4 16 216 5 6 282 19 11 55 1 0 37 3 2 35 3 4 240 0 1 5 chain 15132 chr8 146364022 + 117734287 117734649 THE1B 368 + 0 368 140970 80 158 163 67 0 1 57 chain 3785 chr8 146364022 + 117747780 117747826 Tigger4b 360 - 0 46 210599 46 chain 38271 chr8 146364022 + 117751201 117752064 MER9a3 513 + 0 513 71749 17 0 2 208 21 0 9 16 0 119 316 0 79 10 9 11 0 2 57 chain 24889 chr8 146364022 + 117803580 117804065 L1PB1 5432 - 2 454 105414 8 2 0 18 1 0 13 1 0 21 1 0 24 2 0 12 17 14 21 10 0 3 3 0 16 1 0 44 6 5 10 2 1 53 2 0 10 4 0 10 1 0 9 1 0 24 12 12 37 7 6 21 1 2 39 1 2 17 chain 24618 chr8 146364022 + 117816469 117816831 THE1D 372 + 0 365 106898 162 0 1 16 28 33 100 8 5 48 chain 23805 chr8 146364022 + 117827923 117828287 THE1D 372 - 0 356 111452 157 48 49 119 9 0 31 chain 26760 chr8 146364022 + 117910279 117910637 THE1A 353 + 0 351 97125 80 9 0 29 2 1 84 0 3 5 1 0 60 0 1 88 chain 131077 chr8 146364022 + 117910639 117912215 THE1A-int 1579 + 0 1579 27840 649 0 1 4 1 0 585 0 2 41 0 1 10 0 2 5 4 0 19 0 1 41 0 1 217 chain 26459 chr8 146364022 + 117912215 117912570 THE1A 353 + 0 353 98210 57 1 0 4 8 9 39 2 1 88 1 0 155 chain 111212 chr8 146364022 + 117922213 117923436 L1PA4 6152 + 4923 6146 33883 1223 chain 16324 chr8 146364022 + 117924634 117924991 L1PA10 4194 - 3631 3944 137425 79 12 10 53 3 7 10 23 9 15 1 0 11 8 6 7 1 0 21 2 0 22 1 0 7 34 12 8 1 0 15 2 0 21 chain 43316 chr8 146364022 + 117936506 117937172 LTR76 689 - 0 682 65020 10 4 5 14 2 0 9 5 4 9 7 2 86 8 8 25 12 6 30 0 6 81 1 0 5 2 0 185 1 0 47 8 28 82 1 0 18 0 8 14 chain 9306 chr8 146364022 + 117961696 117961898 LTR12C 1709 - 654 777 164040 43 79 0 80 chain 3067 chr8 146364022 + 117961757 117961796 LTR12C 1709 - 549 588 223621 39 chain 4036 chr8 146364022 + 117968054 117968147 MLT1C 463 + 308 403 206833 15 29 31 49 chain 8970 chr8 146364022 + 117973819 117974157 MSTD 398 - 13 306 165775 60 8 9 30 196 150 44 chain 157016 chr8 146364022 + 117985626 117987434 L1PA5 6144 + 4331 6140 23720 960 1 4 510 0 1 146 1 3 78 5 0 107 chain 11495 chr8 146364022 + 117999549 117999684 L1PA4 6152 + 6010 6152 154314 118 0 6 9 0 1 8 chain 15841 chr8 146364022 + 118034263 118034456 AluYk4 311 + 107 299 138819 25 1 0 167 chain 119876 chr8 146364022 + 118034748 118036102 L1PA4 6152 + 4772 6134 31095 420 0 1 106 0 3 98 0 3 598 0 1 132 chain 25098 chr8 146364022 + 118046932 118047322 THE1D 372 - 0 372 104306 81 1 0 47 0 6 17 49 19 8 0 8 129 1 0 57 chain 40595 chr8 146364022 + 118059906 118060448 MER41A 554 + 1 554 68449 86 1 6 52 0 1 87 2 1 82 6 9 120 10 13 96 chain 5904 chr8 146364022 + 118070716 118070846 MLT1A0 366 - 239 362 186152 36 1 0 27 44 38 22 chain 30006 chr8 146364022 + 118092748 118093181 L1PA16 3655 - 77 507 84787 286 30 28 58 7 6 52 chain 7557 chr8 146364022 + 118136930 118137049 L1PA16 3655 + 3484 3598 173826 58 0 2 5 3 0 29 3 0 15 1 0 5 chain 6277 chr8 146364022 + 118153807 118153924 L1PB1 5432 - 10 120 182961 18 1 0 12 1 0 22 1 0 24 2 0 14 11 9 11 chain 4970 chr8 146364022 + 118177845 118177937 L1M2c 2366 + 1 91 195470 27 19 17 46 chain 9314 chr8 146364022 + 118181539 118181658 MER85 139 + 7 139 163996 53 0 3 26 0 10 40 chain 74297 chr8 146364022 + 118193417 118194247 L1PA4 6152 + 5313 6146 46360 818 0 3 12 chain 539445 chr8 146364022 + 118203677 118209813 L1PA3long 6157 + 0 6157 2906 578 1 5 5 3 0 22 0 6 94 0 7 1202 0 5 28 2 1 2006 0 1 42 0 3 636 1 0 1516 chain 25745 chr8 146364022 + 118223537 118223809 AluYb8 318 - 8 280 101106 272 chain 40068 chr8 146364022 + 118268133 118268589 L1PA7 6471 - 1002 1458 68951 456 chain 85110 chr8 146364022 + 118268589 118269574 L1PA7 6471 + 5464 6455 41478 157 1 0 77 0 4 10 0 3 740 chain 38094 chr8 146364022 + 118324619 118325028 L1PA3long 6157 - 2 411 71999 409 chain 19413 chr8 146364022 + 118333759 118334051 THE1B 368 - 0 368 128912 168 0 4 20 5 4 17 28 101 54 chain 75249 chr8 146364022 + 118361774 118362603 L1PA4 6152 - 532 1361 45897 829 chain 46916 chr8 146364022 + 118362604 118363139 L1PA4 6152 + 5621 6152 61294 525 4 0 6 chain 45113 chr8 146364022 + 118390198 118390708 L1PA4 6152 + 5642 6152 62920 510 chain 44515 chr8 146364022 + 118408832 118409319 L1PA2 6032 + 5544 6032 63560 231 0 1 256 chain 17150 chr8 146364022 + 118424954 118425319 THE1D 372 - 0 372 135165 32 1 0 116 131 139 85 chain 285463 chr8 146364022 + 118431584 118437643 L1PA10 4194 + 181 4161 14323 5 2 0 15 3 0 6 2 0 8 146 109 11 5 0 6 0 3 12 1 0 7 24 22 10 17 9 84 2 0 665 0 1 200 0 1 388 0 4 19 1 2 458 0 4 73 5 1 90 2 0 7 4 5 181 21 25 44 5 11 9 2 1 86 1 0 368 2 0 170 6 9 185 3 1 135 15 17 294 0 1 72 0 1 41 2032 0 19 1 0 24 19 16 34 1 0 11 chain 145721 chr8 146364022 + 118438441 118440313 SVA_A 1864 + 27 1861 25222 88 1 11 596 3 0 12 40 0 29 1 0 32 8 5 31 18 54 138 3 0 38 2 0 79 7 6 131 9 6 27 45 17 534 chain 1278 chr8 146364022 + 118439141 118439170 SVA_A 1864 + 431 460 165178 29 chain 345256 chr8 146364022 + 118446555 118450552 L1PA4 6152 + 0 6143 11750 485 1 0 74 0 1 316 0 1 163 1 0 339 7 2154 149 0 2 1119 5 0 498 1 0 92 0 1 47 0 2 700 chain 29242 chr8 146364022 + 118463654 118463976 AluYb8 318 + 0 315 87836 118 5 0 14 2 0 183 chain 38612 chr8 146364022 + 118467406 118467875 L1P1 4361 + 3874 4341 71277 77 0 2 198 1 0 71 2 0 20 0 1 62 1 0 23 2 1 12 chain 136277 chr8 146364022 + 118491013 118492531 L1PA4 6152 + 4633 6151 26788 1518 chain 282826 chr8 146364022 + 118500001 118503594 L1PA10 4194 + 525 4161 14483 76 0 1 20 11 12 545 0 4 182 0 1 105 0 1 174 0 2 78 0 1 243 1 0 659 0 1 27 0 1 109 1 0 301 0 25 33 0 4 304 0 1 356 0 3 306 4 7 9 4 1 33 1 0 11 chain 71503 chr8 146364022 + 118506034 118507133 L1PA14 3548 - 63 1130 47697 20 1 0 7 6 0 43 1 0 19 6 5 13 4 2 33 20 15 10 0 1 96 1 0 84 2 1 5 2 0 13 5 3 5 2 0 85 0 2 7 13 11 7 2 0 45 2 0 14 3 1 249 1 0 98 1 0 54 1 0 119 chain 18154 chr8 146364022 + 118516185 118516409 AluSp 311 + 82 306 132450 224 chain 31916 chr8 146364022 + 118571492 118571907 L1PA8 5853 - 0 414 80986 93 1 0 17 1 0 55 12 10 70 2 0 46 1 0 5 0 1 27 0 5 85 chain 13272 chr8 146364022 + 118573057 118573201 L1PA4 6152 - 6 150 147202 144 chain 108510 chr8 146364022 + 118583102 118584429 L1PA7 6471 - 2 1325 34559 10 2 0 131 10 9 5 1 0 7 1 2 367 0 1 316 1 0 333 1 0 142 chain 49592 chr8 146364022 + 118584429 118585014 L1PA7 6471 + 4555 5143 59327 117 0 2 131 0 1 337 chain 10653 chr8 146364022 + 118588150 118588446 L1PB1 5432 + 5159 5427 157594 9 2 0 51 19 17 39 6 5 12 31 19 14 10 7 14 2 0 24 1 0 18 18 16 10 1 0 8 2 0 5 chain 4809 chr8 146364022 + 118610004 118610063 LTR16A1 462 + 396 455 197249 59 chain 30218 chr8 146364022 + 118629445 118629947 MLT2A1 477 + 0 477 84136 138 0 3 26 6 3 32 1 2 143 1 2 34 52 2 10 11 0 12 3 33 27 0 4 6 chain 11071 chr8 146364022 + 118643485 118643674 L1PA15 4387 + 4130 4310 155928 55 1 0 22 4 0 10 1 0 39 17 14 40 chain 232673 chr8 146364022 + 118649190 118652006 L1PA4 6152 + 3522 6151 17161 703 2 0 61 193 2 56 0 4 873 0 2 928 chain 15978 chr8 146364022 + 118649958 118650149 L1PA4 6152 + 5637 5823 137673 7 5 0 179 chain 23938 chr8 146364022 + 118660154 118660495 THE1B 368 + 7 368 110703 37 8 23 99 8 7 25 2 0 24 10 18 128 chain 15046 chr8 146364022 + 118670463 118670830 THE1D 372 - 0 372 141191 107 3 1 24 90 96 39 5 4 10 38 40 51 chain 13800 chr8 146364022 + 118681034 118681340 THE1D 372 + 0 372 145270 48 114 176 88 0 5 23 1 0 32 chain 35002 chr8 146364022 + 118685231 118685648 L1PA7 6471 - 1 417 76187 4 1 0 412 chain 44127 chr8 146364022 + 118685655 118686189 L1PA7 6471 + 5465 6003 64044 78 2 1 70 0 3 64 5 6 111 0 1 204 chain 14274 chr8 146364022 + 118697002 118697210 MER30 238 - 2 238 143638 103 5 0 7 4 19 68 3 21 18 chain 29313 chr8 146364022 + 118712809 118713120 AluYa5 310 - 0 310 87489 184 1 0 126 chain 33100 chr8 146364022 + 118720576 118721018 MER4A1 472 + 0 470 79054 100 0 2 107 5 32 29 6 5 195 chain 3826 chr8 146364022 + 118728965 118729007 MADE1 96 - 54 96 209983 42 chain 7720 chr8 146364022 + 118742110 118742208 MER20 218 + 46 143 172788 36 1 0 61 chain 20359 chr8 146364022 + 118752567 118752816 L1PA5 6144 - 0 260 126038 10 2 0 78 0 12 49 0 1 110 chain 8970 chr8 146364022 + 118752816 118752916 L1PA5 6144 + 5753 5854 165776 73 0 1 27 chain 3249 chr8 146364022 + 118761591 118761628 MER117 194 - 48 85 220032 37 chain 162013 chr8 146364022 + 118787287 118792286 L1PREC2 3366 + 248 2951 23061 6 1 0 10 8 7 18 12 11 170 0 3 20 0 1 45 7 8 105 10 0 221 39 38 388 16 11 148 6 0 225 1 0 102 5 0 42 11 12 200 16 18 45 2546 281 369 2 0 26 23 34 31 12 10 14 29 21 12 2 0 5 3 0 17 2 0 29 chain 108622 chr8 146364022 + 118789352 118790649 SVA_B 1603 + 0 1603 34533 19 0 25 224 0 4 151 0 116 147 40 0 140 0 201 576 chain 51352 chr8 146364022 + 118791130 118791695 L1PA4 6152 + 5578 6143 58060 565 chain 72923 chr8 146364022 + 118799080 118799904 L1PA5 6144 - 2 824 47055 111 1 0 55 1 0 4 0 1 86 1 0 565 chain 47675 chr8 146364022 + 118869955 118870623 Tigger1 2417 + 1435 2083 60714 19 8 7 5 0 1 218 0 3 86 1 4 226 32 6 73 chain 8400 chr8 146364022 + 118876594 118876691 MER30 238 - 3 100 168853 97 chain 25545 chr8 146364022 + 118876717 118877020 AluY 311 + 11 311 102017 121 0 1 165 4 0 13 chain 79996 chr8 146364022 + 118926375 118927446 MER11A 1151 + 0 1151 43596 85 0 91 103 0 5 10 4 0 32 0 2 115 0 1 94 0 1 145 5 6 123 1 27 14 34 8 21 18 0 37 0 1 46 1 0 16 0 1 167 chain 6805 chr8 146364022 + 118975161 118975295 LTR32 486 + 15 150 178913 69 38 39 27 chain 24985 chr8 146364022 + 119015079 119015629 L1PB1 5432 + 4921 5422 104885 38 4 5 25 1 4 21 4 6 74 16 9 11 19 0 22 1 0 8 1 0 14 4 1 10 2 0 51 2 1 16 1 0 40 4 3 16 24 12 18 30 26 18 1 0 21 1 0 13 1 0 18 chain 12049 chr8 146364022 + 119068211 119068388 MER30 238 - 0 192 151988 101 2 27 12 10 0 52 chain 65297 chr8 146364022 + 119076425 119077528 L1PA7 6471 - 4 801 50425 9 0 2 136 1 2 511 309 0 137 chain 11836 chr8 146364022 + 119149910 119150117 MER30 238 - 13 238 152881 92 1 25 7 14 0 55 20 28 18 chain 36573 chr8 146364022 + 119173033 119173454 L1PA4 6152 - 1 421 74134 101 1 0 294 0 3 5 3 0 17 chain 22287 chr8 146364022 + 119180165 119180459 THE1A 353 + 8 353 118962 10 0 1 83 9 8 110 0 51 82 chain 34981 chr8 146364022 + 119184086 119184489 L1PA5 6144 + 5708 6129 76209 74 0 18 329 chain 24384 chr8 146364022 + 119191398 119191699 AluSp 311 + 0 303 108169 36 0 4 242 2 0 21 chain 28604 chr8 146364022 + 119215829 119216161 L1PA5 6144 - 2 339 90715 7 4 0 33 0 9 288 chain 95956 chr8 146364022 + 119227704 119228752 L1PA2 6032 - 2 1054 37833 850 0 4 198 chain 101783 chr8 146364022 + 119240056 119241502 L1PB1 5432 + 3999 5413 36325 354 0 2 21 0 1 249 7 0 477 14 12 23 1 0 5 34 27 26 4 7 17 2 1 16 1 0 43 1 0 16 1 3 9 14 0 19 8 5 14 2 0 26 0 1 18 1 0 13 1 0 9 chain 22754 chr8 146364022 + 119247456 119247724 AluSc 308 - 17 285 116808 268 chain 9882 chr8 146364022 + 119261279 119261401 MER2B 336 - 94 216 161165 122 chain 76980 chr8 146364022 + 119267595 119268429 L1PA3long 6157 - 0 834 44980 834 chain 15649 chr8 146364022 + 119278197 119278534 THE1C 375 - 24 375 139439 106 0 1 6 59 64 49 21 22 26 21 30 33 2 0 14 chain 109506 chr8 146364022 + 119283697 119285249 THE1C-int 1605 - 9 1560 34316 37 11 10 6 0 1 127 0 1 39 0 2 144 16 14 46 3 0 461 1 0 7 40 0 7 2 35 24 4 0 183 0 7 82 29 35 283 chain 19210 chr8 146364022 + 119288015 119288271 L1PA16 3655 - 120 376 129504 39 0 2 203 3 1 11 chain 34300 chr8 146364022 + 119298182 119298566 L1PA5 6144 + 5760 6144 77211 384 chain 27213 chr8 146364022 + 119299361 119299663 AluYk4 311 - 10 311 95550 175 1 0 126 chain 5429 chr8 146364022 + 119304348 119304533 L1PB1 5432 + 5274 5430 190711 6 1 0 12 63 42 12 2 0 24 1 0 19 8 7 8 1 0 16 2 0 10 chain 50470 chr8 146364022 + 119304751 119305300 L1PA2 6032 + 5480 6029 58665 549 chain 5991 chr8 146364022 + 119312468 119312540 L1MA5A 2387 - 86 157 185327 6 1 0 65 chain 30389 chr8 146364022 + 119321253 119321840 L1PB1 5432 - 10 512 83702 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 24 12 16 1 0 43 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 10 8 19 8 1 10 59 12 174 chain 13814 chr8 146364022 + 119329203 119329370 MLT1B 390 + 91 258 145200 167 chain 21920 chr8 146364022 + 119332807 119333060 L1PA5 6144 + 5885 6138 120543 253 chain 20846 chr8 146364022 + 119348725 119348957 L1PA5 6144 - 462 694 124475 232 chain 37299 chr8 146364022 + 119348964 119349410 L1PA5 6144 + 5697 6144 73080 107 1 2 338 chain 35041 chr8 146364022 + 119367196 119367746 L1PB1 5432 + 4884 5422 76131 219 15 11 24 1 0 8 1 0 11 15 13 49 1 0 17 1 0 41 7 6 13 2 0 14 0 2 11 4 8 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 5476 chr8 146364022 + 119384973 119385054 MADE1 96 - 0 96 190247 31 4 19 46 chain 20914 chr8 146364022 + 119407923 119408185 AluY 311 + 8 296 124230 124 0 1 96 10 35 32 chain 27990 chr8 146364022 + 119447057 119447358 AluYa5 310 + 0 298 93034 97 3 0 201 chain 29028 chr8 146364022 + 119475059 119475365 AluYg6 310 + 0 306 88860 306 chain 25491 chr8 146364022 + 119512306 119512615 AluSp 311 - 4 310 102269 30 4 1 275 chain 18066 chr8 146364022 + 119520409 119520626 L1PA5 6144 + 5916 6140 132685 73 1 8 143 chain 555125 chr8 146364022 + 119560777 119566925 L1PA3long 6157 + 0 6157 815 743 1 0 447 0 3 1332 0 3 1461 3 0 2013 1 8 147 chain 21982 chr8 146364022 + 119631481 119631736 AluY 311 + 47 301 120305 79 1 0 175 chain 27008 chr8 146364022 + 119660718 119661082 THE1B 368 + 0 368 96256 108 5 4 57 1 0 29 0 3 9 0 4 16 1 0 138 chain 10237 chr8 146364022 + 119706185 119706332 MSTA-int 1630 - 14 166 159441 63 0 1 35 7 6 21 0 5 21 chain 87518 chr8 146364022 + 119711578 119712560 L1PA4 6152 - 0 981 40561 113 0 1 146 2 0 721 chain 53164 chr8 146364022 + 119712560 119713142 L1PA4 6152 + 4588 5170 56731 582 chain 17639 chr8 146364022 + 119718174 119718390 L1PB2 3958 + 2599 2817 133883 51 0 1 141 0 1 24 chain 24415 chr8 146364022 + 119726810 119727118 AluY 311 + 5 297 107997 127 0 1 153 17 0 11 chain 549177 chr8 146364022 + 119729962 119736092 L1PA3long 6157 - 2 6157 1554 251 0 1 335 0 4 3304 0 2 1195 1 2 318 1 0 32 1 0 553 0 19 139 chain 3512 chr8 146364022 + 119761906 119761944 MER53 195 + 128 166 215183 38 chain 16283 chr8 146364022 + 119764247 119764601 THE1C 375 + 2 375 137526 54 13 27 8 13 0 18 46 51 19 0 3 14 35 46 108 1 0 25 chain 48566 chr8 146364022 + 119800263 119800879 PRIMA4_LTR 623 + 2 621 60061 183 1 2 197 0 2 235 chain 73745 chr8 146364022 + 119809437 119810247 L1PA3long 6157 - 2176 2986 46651 810 chain 84045 chr8 146364022 + 119810248 119811164 L1PA3long 6157 - 2986 3902 41887 916 chain 125822 chr8 146364022 + 119811168 119812559 L1PA3long 6157 + 3983 5383 29150 223 0 1 141 0 8 1027 chain 71118 chr8 146364022 + 119812559 119813332 L1PA3long 6157 + 5384 6157 47879 773 chain 20482 chr8 146364022 + 119813610 119813900 AluY 311 + 17 307 125674 115 25 26 45 2 1 103 chain 42334 chr8 146364022 + 119832888 119833420 MER41A 554 - 16 554 66229 71 0 1 48 0 1 20 0 1 52 0 1 4 1 0 106 0 3 230 chain 195097 chr8 146364022 + 119840271 119842619 L1PA7 6471 + 4123 6469 19576 82 0 1 401 0 2 266 4 0 508 0 7 227 19 15 485 1 0 14 0 1 73 5 1 263 chain 26269 chr8 146364022 + 119852445 119852774 THE1D-int 1627 + 0 330 98938 38 1 0 59 0 1 210 0 1 21 chain 119261 chr8 146364022 + 119866398 119867806 L1PA7 6471 - 7 1422 31310 652 0 3 126 0 1 61 1 0 18 0 4 550 chain 118367 chr8 146364022 + 119867806 119869233 L1PA7 6471 + 3535 4975 31573 14 3 7 64 9 10 20 0 1 358 3 1 305 0 1 350 0 8 301 chain 13654 chr8 146364022 + 119935168 119935352 L1PA7 6471 - 19 202 145763 137 9 8 38 chain 6530 chr8 146364022 + 119948989 119949070 AluSc 308 + 227 308 181006 81 chain 31216 chr8 146364022 + 119952210 119952573 L1PA6 6164 + 5796 6161 82129 355 0 2 8 chain 15556 chr8 146364022 + 119954321 119954515 L1PA5 6144 - 12 204 139713 160 3 1 31 chain 20877 chr8 146364022 + 119980882 119981152 L1PA7 6471 - 17 293 124371 14 0 2 113 0 1 10 0 1 103 4 6 26 chain 10047 chr8 146364022 + 119988751 119988858 U6 107 + 0 107 160330 107 chain 103842 chr8 146364022 + 119988858 119989994 L1PA3long 6157 + 5016 6156 35763 1086 0 4 50 chain 3857 chr8 146364022 + 120002031 120002229 Tigger4a 237 - 1 61 209493 38 84 0 4 54 0 18 chain 8484 chr8 146364022 + 120005396 120005525 MLT1B 390 - 24 154 168387 94 13 14 22 chain 3826 chr8 146364022 + 120020985 120021027 MADE1 96 - 3 45 209982 42 chain 53356 chr8 146364022 + 120028279 120029362 L1PA8 5853 - 0 772 56800 50 12 28 14 2 1 16 1 0 49 2 1 15 2 1 70 2 0 33 0 1 10 1 0 43 0 1 226 8 9 30 0 2 75 328 0 5 0 3 89 chain 26893 chr8 146364022 + 120040576 120040930 THE1A 353 - 0 352 96653 75 1 0 167 7 6 104 chain 87202 chr8 146364022 + 120045524 120046665 L1PA7 6471 + 5347 6470 40687 77 0 1 86 0 1 108 0 4 49 0 1 26 0 2 41 3 2 48 1 0 281 2 1 246 1 3 100 28 1 31 1 2 12 chain 26219 chr8 146364022 + 120069289 120069652 THE1D 372 + 0 372 99127 61 4 14 114 20 19 164 chain 47448 chr8 146364022 + 120121328 120121921 L1P3 4156 - 609 1198 60868 336 12 8 245 chain 215074 chr8 146364022 + 120121931 120124588 L1PA7 6471 + 3784 6469 18161 52 27 26 142 5 6 76 0 5 230 0 1 427 0 1 24 0 3 71 0 1 382 0 1 203 0 1 163 0 4 16 0 6 19 1 5 96 0 1 551 14 14 158 chain 67744 chr8 146364022 + 120131741 120132508 L1PA5 6144 - 1 770 49349 622 0 2 145 chain 42245 chr8 146364022 + 120132508 120132992 L1PA5 6144 + 4900 5381 65691 402 3 0 79 chain 8084 chr8 146364022 + 120168852 120168966 L1PA2 6032 + 5938 6032 170576 84 20 0 10 chain 557064 chr8 146364022 + 120171637 120177649 L1PA2 6032 - 5 6032 604 5331 0 12 265 0 3 416 chain 23308 chr8 146364022 + 120182478 120182837 MLT2A1 477 - 104 477 114163 161 18 17 20 1 8 29 0 1 83 8 10 11 8 13 20 chain 82480 chr8 146364022 + 120193758 120194811 MER11B 1079 - 0 1079 42549 11 5 3 74 6 8 59 2 0 5 5 7 7 0 3 80 0 3 50 0 2 151 3 4 278 1 18 316 chain 23600 chr8 146364022 + 120212412 120212746 THE1B 368 - 0 345 112591 126 1 0 12 18 21 8 0 3 10 0 3 16 1 0 27 0 4 115 chain 110405 chr8 146364022 + 120237373 120238646 L1PA4 6152 - 12 1268 34094 236 4 0 80 0 3 62 0 2 455 0 4 74 22 0 340 chain 18467 chr8 146364022 + 120245097 120245312 L1P1 4361 - 1487 1708 131591 181 0 5 7 0 1 27 chain 75125 chr8 146364022 + 120245313 120246186 L1P1 4361 + 2882 3752 45957 204 4 0 214 11 12 440 chain 529619 chr8 146364022 + 120246187 120252156 L1PA3long 6157 + 0 6157 4233 152 0 1 103 0 1 520 1 129 486 9 18 155 1 3 285 0 5 932 0 2 474 0 4 53 0 1 826 0 4 4 1 0 300 0 3 28 0 7 162 0 1 648 0 2 339 0 5 348 0 14 142 chain 8147 chr8 146364022 + 120259261 120259352 MER85 139 + 5 96 170249 91 chain 9288 chr8 146364022 + 120262285 120262387 L1PA2 6032 - 381 483 164118 102 chain 34468 chr8 146364022 + 120262391 120262783 L1PA2 6032 + 5633 6027 76961 241 0 7 140 5 0 6 chain 279303 chr8 146364022 + 120266429 120269585 L1PA4 6152 + 2972 6143 14676 16 0 7 176 4 3 319 0 4 102 14 6 567 0 1 81 1 0 767 0 9 274 0 4 688 0 3 6 3 0 138 chain 498965 chr8 146364022 + 120296571 120302693 L1PA6 6164 - 2 6164 6898 9 2 0 133 16 17 131 7 11 543 0 3 81 0 1 437 0 1 85 1 2 260 1 0 4 0 2 461 1 0 54 0 1 8 0 1 391 13 10 326 5 6 226 2 1 407 0 4 93 0 4 114 0 1 551 0 1 325 0 1 4 1 0 169 1 3 456 0 17 216 0 1 23 1 0 48 0 2 255 1 0 24 0 2 36 1 0 4 17 18 178 chain 543292 chr8 146364022 + 120304280 120310427 L1PA3long 6157 + 6 6155 2296 311 5 4 1125 0 3 27 0 1 264 0 1 837 5 6 271 0 1 400 0 3 1583 10 0 463 0 1 693 1 0 6 1 4 145 chain 10848 chr8 146364022 + 120318251 120318375 L1PA2 6032 - 576 700 156791 124 chain 51702 chr8 146364022 + 120318375 120318942 L1PA2 6032 + 5456 6023 57815 567 chain 495846 chr8 146364022 + 120319046 120325161 L1PA6 6164 + 0 6162 7081 345 10 28 35 19 19 360 0 17 427 0 1 6 0 1 516 7 11 191 6 5 372 7 6 48 7 4 57 0 4 504 2 1 238 0 1 26 2 0 694 0 1 11 0 1 458 1 3 556 0 1 242 0 1 5 0 1 87 0 1 206 0 2 9 0 1 147 0 1 352 1 0 9 3 0 69 0 1 50 0 2 20 2 0 8 chain 143212 chr8 146364022 + 120328093 120329678 L1PA3long 6157 + 4574 6157 25612 733 1 0 845 1 0 5 chain 33942 chr8 146364022 + 120331889 120332335 THE1B-int 1605 - 1126 1605 77704 12 0 2 8 0 25 45 4 9 255 0 1 77 0 1 4 1 0 40 chain 21903 chr8 146364022 + 120332336 120332679 THE1B 368 - 1 368 120607 109 60 70 19 1 0 110 0 15 44 chain 5817 chr8 146364022 + 120337418 120337498 MADE1 96 + 0 96 186978 33 2 18 45 chain 20479 chr8 146364022 + 120342666 120343017 THE1D 372 - 0 358 125687 25 7 6 28 9 10 105 26 30 61 1 0 41 15 19 33 chain 10552 chr8 146364022 + 120343725 120343855 THE1D 372 - 0 130 158041 130 chain 7649 chr8 146364022 + 120343931 120344018 THE1D 372 - 206 293 173237 87 chain 3549 chr8 146364022 + 120344049 120344089 THE1D 372 - 316 356 214560 40 chain 26498 chr8 146364022 + 120348000 120348524 L1PREC2 3366 - 329 819 98052 27 14 12 27 34 20 29 3 1 11 10 5 22 26 19 11 7 3 44 17 16 38 2 0 60 0 2 45 0 1 97 chain 17189 chr8 146364022 + 120382303 120382535 MER47A 366 - 48 295 135066 15 8 9 184 0 14 25 chain 25993 chr8 146364022 + 120389872 120390162 L1PA4 6152 + 5861 6151 100043 290 chain 397063 chr8 146364022 + 120390201 120395185 L1PA7 6471 + 1597 6459 10195 61 0 1 109 0 3 307 0 1 167 1 0 97 0 1 4 1 0 289 0 2 232 0 5 602 0 4 21 2 0 20 1 0 26 0 4 189 1 0 58 0 1 35 7 6 354 1 0 434 5 4 315 1 0 92 0 4 62 2 0 5 1 3 506 1 0 8 142 0 283 9 13 341 0 1 192 chain 65547 chr8 146364022 + 120422675 120423433 L1PA5 6144 - 6 766 50317 601 0 2 157 chain 551765 chr8 146364022 + 120468441 120474592 L1PA3long 6157 - 0 6151 1214 843 0 4 517 2 1 847 0 1 735 1 0 518 0 1 1612 0 1 335 5 0 736 chain 6497 chr8 146364022 + 120484351 120484455 MLT1D 503 + 2 107 181276 35 17 18 52 chain 536512 chr8 146364022 + 120486108 120492121 L1PA3long 6157 - 1 6153 3373 778 1 0 2207 0 1 1162 0 1 1103 0 128 554 1 10 57 19 20 131 chain 7354 chr8 146364022 + 120509765 120509902 THE1D 372 + 0 136 175070 47 3 0 20 30 31 13 0 1 24 chain 30676 chr8 146364022 + 120509908 120511846 MLT2A1 477 - 12 458 83081 45 1482 5 7 5 0 10 10 0 149 10 11 33 0 1 24 0 1 10 5 2 148 chain 29661 chr8 146364022 + 120513394 120513791 MER57A1 433 - 1 433 86022 114 14 40 109 0 6 134 0 3 26 chain 525319 chr8 146364022 + 120533243 120539395 L1PA5 6144 + 0 6143 4656 135 0 14 195 21 0 581 14 3 147 4 7 83 13 4 1137 2 0 1176 0 1 25 1 2 736 1 0 3 0 1 1119 0 2 634 1 16 111 3 1 10 chain 18396 chr8 146364022 + 120554648 120554889 AluY 311 + 58 300 131800 172 5 8 43 3 1 18 chain 73106 chr8 146364022 + 120561554 120562377 L1PA3long 6157 - 11 834 46927 823 chain 96890 chr8 146364022 + 120562377 120563429 L1PA3long 6157 + 4278 5330 37586 1052 chain 23074 chr8 146364022 + 120659238 120659534 AluSg7 307 - 10 307 115279 152 13 14 131 chain 22235 chr8 146364022 + 120673263 120673572 L1PA8 5853 + 5551 5853 119187 11 1 0 47 2 0 69 2 1 14 1 0 47 2 1 19 1 0 93 chain 63181 chr8 146364022 + 120688695 120689523 L1PA8 5853 + 5031 5853 51364 26 2 1 36 0 1 425 5 6 38 1 0 44 2 0 72 1 0 7 2 1 52 2 1 10 11 10 92 chain 28812 chr8 146364022 + 120703200 120705390 THE1C 375 + 1 375 89833 124 1816 0 250 chain 17010 chr8 146364022 + 120703327 120703561 THE1C 375 + 125 360 135565 59 1 2 174 chain 6512 chr8 146364022 + 120705058 120705137 THE1C 375 + 46 125 181147 79 chain 17280 chr8 146364022 + 120724148 120724385 7SK 245 - 9 245 134834 95 19 18 123 chain 35016 chr8 146364022 + 120729722 120730190 MER4A1 472 + 0 472 76170 25 0 1 19 2 9 26 1 0 140 21 17 56 0 1 178 chain 42596 chr8 146364022 + 120730764 120731282 MER41A 554 + 28 554 65904 180 5 8 252 0 5 81 chain 3238 chr8 146364022 + 120745154 120745188 MER8 282 + 0 34 220270 34 chain 6483 chr8 146364022 + 120781917 120781998 L1PA15-16 3068 + 533 614 181376 81 chain 10441 chr8 146364022 + 120786686 120786846 MER30 238 + 66 238 158526 24 6 8 11 4 14 115 chain 93040 chr8 146364022 + 120799172 120800487 L1PA7 6471 + 5337 6467 38646 79 0 1 115 6 7 63 1 5 8 189 0 9 2 0 66 0 1 272 0 1 495 2 0 8 chain 13100 chr8 146364022 + 120799459 120799605 L1PA3long 6157 + 6011 6157 147848 146 chain 125065 chr8 146364022 + 120811407 120812818 L1PA5 6144 - 5 1434 29375 47 0 4 213 0 2 135 0 3 434 0 4 22 0 4 59 0 1 501 chain 28932 chr8 146364022 + 120823764 120824068 AluYk12 309 + 0 304 89316 304 chain 114849 chr8 146364022 + 120835912 120837769 THE1B-int 1605 + 16 1600 32832 91 0 3 313 17 42 38 0 2 13 312 1 89 3 0 31 0 1 456 12 16 40 28 32 73 0 2 341 chain 20133 chr8 146364022 + 120838268 120838511 L1PA7 6471 + 6227 6470 126735 243 chain 14277 chr8 146364022 + 120838540 120838725 THE1B 368 + 174 356 143628 117 3 0 65 chain 24782 chr8 146364022 + 120859901 120860204 AluSp 311 - 8 311 105980 303 chain 12575 chr8 146364022 + 120861667 120861942 L1MB8 1703 + 1444 1648 149936 144 80 18 23 10 1 18 chain 15648 chr8 146364022 + 120874919 120875100 7SLRNA 320 + 18 199 139442 181 chain 45954 chr8 146364022 + 120881415 120881954 L1PA7 6471 + 5929 6469 62077 394 0 1 145 chain 9040 chr8 146364022 + 120881984 120882094 LTR8 732 + 618 728 165378 110 chain 23688 chr8 146364022 + 120891067 120891361 AluSp 311 + 0 293 112097 17 5 4 272 chain 22232 chr8 146364022 + 120900818 120901121 AluSx4 309 + 5 303 119203 48 13 11 210 8 5 24 chain 5692 chr8 146364022 + 120903399 120903469 5S 121 - 51 121 188180 70 chain 3671 chr8 146364022 + 120925461 120925506 LTR24B 570 - 27 72 212373 45 chain 78078 chr8 146364022 + 120929571 120930497 LTR5_Hs 974 + 0 971 44477 17 0 4 62 0 34 471 0 1 230 1 7 145 chain 4365 chr8 146364022 + 120938750 120938851 MER53 195 + 75 176 202392 5 2 0 26 31 33 37 chain 16185 chr8 146364022 + 120965452 120966036 MER39B 650 - 127 388 137804 53 352 25 109 14 18 56 chain 8756 chr8 146364022 + 120979619 120979724 MER39B 650 - 341 446 166885 105 chain 24340 chr8 146364022 + 120985184 120985467 AluSp 311 - 17 300 108418 283 chain 87789 chr8 146364022 + 120996533 120997883 L1PA7 6471 - 7 1091 40380 26 0 17 584 287 0 189 24 28 240 chain 141121 chr8 146364022 + 120997883 120999982 L1P2 5180 - 2672 4674 25966 182 31 0 428 0 1 14 1 0 52 0 1 504 10 9 67 3 2 22 6 7 169 1 0 5 4 5 72 0 1 63 0 2 100 0 15 46 58 37 11 15 15 113 53 0 3 23 0 11 1 2 17 0 13 4 1 0 9 chain 56460 chr8 146364022 + 121000003 121000707 L1P3 4156 - 3444 4153 54873 369 0 7 16 1 0 68 2 1 248 chain 11700 chr8 146364022 + 121024517 121024684 Tigger3c 601 - 61 239 153474 55 12 20 28 1 0 53 0 4 18 chain 23192 chr8 146364022 + 121039185 121039462 AluSp 311 + 10 287 114710 277 chain 28301 chr8 146364022 + 121081587 121082036 MLT2A1 477 + 0 467 91943 129 0 1 26 1 0 13 1 5 107 2 1 14 0 1 60 8 4 18 48 66 22 chain 25918 chr8 146364022 + 121135336 121135632 AluSq10 312 - 16 312 100346 296 chain 10828 chr8 146364022 + 121178457 121178633 MER54A 897 - 729 897 156880 45 23 15 30 0 1 59 1 0 18 chain 87572 chr8 146364022 + 121190343 121191413 L1PA7 6471 - 19 1098 40543 83 0 8 571 6 5 82 2 3 71 0 8 101 7 0 147 chain 76131 chr8 146364022 + 121191413 121192355 L1PA7 6471 + 4444 5380 45052 467 0 1 17 17 6 289 0 4 152 chain 424135 chr8 146364022 + 121201725 121206433 L1PA3long 6157 - 0 6151 9444 1113 20 1463 3575 chain 15528 chr8 146364022 + 121227334 121227524 AluSx 319 + 8 197 139804 103 1 0 86 chain 531497 chr8 146364022 + 121244514 121251302 L1PA7 6471 - 5 6468 4022 14 0 1 134 19 20 285 0 2 346 1 0 43 1 0 311 56 6 115 1 0 16 0 1 390 0 1 109 0 4 15 0 1 4 1 0 17 0 1 598 1 0 4 0 1 153 8 7 4 0 1 248 303 0 503 0 2 477 2 0 109 0 1 523 0 9 646 2 1 61 0 2 261 0 7 586 4 5 13 1 2 403 chain 17423 chr8 146364022 + 121256641 121256967 L1PB1 5432 - 5 301 134455 4 1 0 19 1 0 34 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 1 0 43 1 0 16 2 1 40 0 2 11 2 0 8 2 0 3 2 0 10 1 0 8 1 0 7 chain 16299 chr8 146364022 + 121282921 121283324 L1PA15 4387 + 3971 4357 137484 74 62 61 25 28 30 24 1 0 22 8 0 10 7 6 13 0 2 29 6 3 41 10 8 11 5 0 27 chain 14237 chr8 146364022 + 121288759 121288926 L1PA5 6144 - 182 349 143768 167 chain 13763 chr8 146364022 + 121288926 121289084 L1PA5 6144 + 5986 6144 145389 158 chain 32635 chr8 146364022 + 121291135 121291553 L1PA8 5853 + 5440 5853 79789 124 1 0 44 2 0 70 2 1 27 0 1 33 2 1 19 2 1 92 chain 16119 chr8 146364022 + 121294309 121294480 L1PA3long 6157 + 5733 5904 137999 171 chain 144400 chr8 146364022 + 121314624 121316715 L1PREC2 3366 - 318 2367 25414 38 6 4 35 21 8 11 4 1 27 6 4 13 93 76 24 4 3 11 0 1 39 3 1 41 1 0 164 1 3 296 0 1 101 5 4 121 0 1 72 1 3 178 3 1 168 2 0 206 0 1 76 6 5 30 5 1 12 0 1 267 chain 15797 chr8 146364022 + 121319532 121319751 Tigger3d 321 + 69 290 138963 64 1 2 47 4 5 103 chain 28542 chr8 146364022 + 121360257 121360904 L1PB1 5432 + 4955 5420 90992 148 1 0 8 150 0 6 3 0 21 1 0 8 1 0 12 15 9 52 7 6 12 1 0 44 1 0 15 3 0 6 16 6 19 9 6 13 2 0 24 1 0 20 0 3 11 1 0 16 chain 502187 chr8 146364022 + 121361216 121366643 L1PA2 6032 + 604 6032 6713 110 0 1 227 1 0 4 1 2 5084 chain 17040 chr8 146364022 + 121371326 121371559 L1PA8 5853 - 15 244 135494 78 1 0 15 2 1 56 1 0 5 2 1 73 chain 203066 chr8 146364022 + 121398088 121401617 L1PB3 3668 - 48 3347 18988 7 1 0 14 7 4 13 1 0 13 7 3 37 3 1 24 5 3 19 81 150 42 1 0 283 4 5 14 2 0 4 0 1 208 50 35 69 5 4 96 6 5 4 0 1 449 4 0 9 0 1 21 2 14 70 307 0 177 11 15 108 6 7 30 4 0 25 10 9 73 0 20 133 21 13 20 10 14 73 0 3 57 26 14 61 1 2 93 7 35 26 13 11 60 32 7 11 1 28 124 4 3 176 1 0 7 27 29 161 8 0 44 0 1 6 chain 336306 chr8 146364022 + 121410761 121415307 L1PA11 4918 + 47 4567 11990 31 2 0 9 1 0 23 6 5 13 2 0 52 1 0 33 2 0 5 2 1 184 0 29 32 35 10 49 0 7 71 1 0 542 0 3 272 0 2 37 0 6 298 5 9 23 0 1 19 0 1 315 1 8 71 3 0 35 51 16 46 1 5 24 0 1 165 0 4 42 25 23 148 1 0 176 1 0 20 1 2 300 0 3 213 0 1 104 1 0 524 0 1 52 0 2 232 6 2 44 2 1 13 2 0 52 1 0 15 2 0 13 2 1 14 10 6 9 3 0 5 2 0 11 9 6 14 2 1 13 chain 32052 chr8 146364022 + 121439707 121440447 L1PA13 3608 + 3025 3552 80776 33 14 0 70 1 0 31 2 1 36 168 9 68 2 0 62 7 6 45 1 0 10 2 0 48 9 5 19 1 0 19 0 3 7 37 11 11 0 1 4 2 1 10 1 0 1 2 0 12 1 0 4 chain 16730 chr8 146364022 + 121441970 121442190 MER2 342 - 30 251 136315 201 1 2 18 chain 23106 chr8 146364022 + 121469878 121470212 AluY 311 + 0 306 115110 10 4 0 114 2 3 48 29 7 117 3 0 7 chain 91762 chr8 146364022 + 121480518 121482094 HSMAR1 1287 - 0 1285 39044 207 6 4 339 2 1 52 15 32 11 2 7 32 0 3 29 6 7 8 1 0 40 325 4 238 0 3 105 1 6 157 chain 190367 chr8 146364022 + 121488424 121490650 L1PA7 6471 + 4236 6470 20009 37 0 1 399 0 4 277 0 1 665 2 1 742 0 3 104 chain 3457 chr8 146364022 + 121531371 121531473 MER2 342 + 14 114 216030 19 52 50 31 chain 3605 chr8 146364022 + 121543401 121543453 LTR16D 553 - 13 66 213573 29 1 2 22 chain 2327 chr8 146364022 + 121544772 121544944 MER20B 722 - 528 698 235015 5 1 0 16 126 125 24 chain 26550 chr8 146364022 + 121564907 121565352 MER1A 529 - 9 488 97837 30 42 37 168 13 14 31 19 52 68 0 1 22 13 17 17 1 0 6 0 1 15 chain 26666 chr8 146364022 + 121594827 121595172 L1PA8 5853 + 5522 5853 97434 42 1 0 44 2 0 70 2 1 14 1 0 47 2 1 19 1 0 56 7 0 37 chain 43926 chr8 146364022 + 121607382 121608214 MER41A 554 + 0 552 64301 233 2 1 178 301 22 118 chain 3132 chr8 146364022 + 121625153 121625205 L1MA4 2864 - 60 113 222329 31 5 6 16 chain 14347 chr8 146364022 + 121629242 121629454 MER30 238 + 0 238 143391 73 7 13 20 12 32 100 chain 3160 chr8 146364022 + 121633782 121633840 MADE1 96 + 1 83 221740 23 10 34 25 chain 57109 chr8 146364022 + 121648489 121649111 L1PA3long 6157 - 5 627 54462 622 chain 230365 chr8 146364022 + 121650648 121653264 L1PA5 6144 - 1 2650 17289 140 7 6 148 0 1 36 0 1 193 0 14 132 1 0 171 0 4 201 0 1 15 0 9 420 0 1 877 2 3 87 0 1 13 0 2 173 chain 18404 chr8 146364022 + 121655881 121656125 L1PB2 3958 - 120 360 131769 7 0 1 55 1 0 22 2 0 74 1 0 62 1 0 19 chain 555591 chr8 146364022 + 121656401 121662427 L1PA2 6032 - 0 6025 764 5776 1 0 249 chain 6510 chr8 146364022 + 121665392 121665805 MLT1C 463 + 57 440 181162 48 318 288 47 chain 25451 chr8 146364022 + 121673733 121674086 L1PA8 5853 - 0 346 102453 93 1 0 19 2 1 44 23 21 67 2 0 44 1 0 57 chain 29059 chr8 146364022 + 121681683 121681991 AluYb8 318 - 10 318 88722 308 chain 27098 chr8 146364022 + 121695109 121695420 AluYk4 311 - 2 311 95952 9 2 0 300 chain 12133 chr8 146364022 + 121702319 121702479 MER44A 345 + 83 252 151684 18 0 4 69 1 5 53 0 1 19 chain 113470 chr8 146364022 + 121733983 121735354 L1PA6 6164 - 3 1351 33231 137 1 0 279 21 14 415 0 4 340 24 5 154 chain 5172 chr8 146364022 + 121758234 121758819 MER58A 224 + 45 209 193337 35 34 50 14 457 20 45 chain 8297 chr8 146364022 + 121788135 121788234 L1PA5 6144 - 9 104 169416 54 4 0 41 chain 4455 chr8 146364022 + 121804398 121804486 L1PB3 3668 + 3482 3566 201288 18 6 4 24 11 9 29 chain 29219 chr8 146364022 + 121854753 121855061 AluYa5 310 - 2 310 87963 308 chain 28370 chr8 146364022 + 121865229 121865608 THE1C 375 + 0 375 91701 178 0 3 12 11 5 151 1 0 26 chain 110023 chr8 146364022 + 121898300 121899505 L1PA3long 6157 - 1214 2419 34211 1205 chain 110095 chr8 146364022 + 121899506 121900712 L1PA3long 6157 + 4950 6157 34184 585 0 1 621 chain 21996 chr8 146364022 + 121925478 121925754 THE1D-int 1627 + 0 275 120252 11 2 1 263 chain 10947 chr8 146364022 + 121938699 121938847 L1PA8 5853 - 0 144 156415 5 2 0 88 1 0 17 1 0 34 chain 29046 chr8 146364022 + 121950777 121951090 AluYb8 318 + 0 311 88781 132 2 0 179 chain 25214 chr8 146364022 + 121976073 121976413 THE1A 353 - 12 353 103666 123 3 0 5 1 4 9 4 6 84 2 1 109 chain 28915 chr8 146364022 + 122004905 122005244 L1PA2 6032 - 1 340 89393 140 1 8 9 7 0 182 chain 65141 chr8 146364022 + 122009046 122009814 L1PA4 6152 - 14 793 50507 121 31 42 616 chain 10886 chr8 146364022 + 122020864 122020995 L1PA4 6152 - 9 138 156635 35 2 0 94 chain 10100 chr8 146364022 + 122033387 122033502 THE1B-int 1605 - 6 121 160094 115 chain 137551 chr8 146364022 + 122037175 122038725 L1PA4 6152 - 12 1559 26537 198 7 4 1345 chain 138333 chr8 146364022 + 122038725 122040291 L1P1 4361 + 2425 3992 26428 103 0 1 151 0 1 5 9 8 1298 chain 116627 chr8 146364022 + 122053199 122054577 L1PA5 6144 - 1 1355 32255 10 3 1 447 12 14 204 1 0 173 1 0 116 22 0 389 chain 544178 chr8 146364022 + 122062933 122069035 L1PA3long 6157 - 0 6127 2191 1988 0 1 223 0 1 255 3 2 124 0 1 270 1 0 121 1 0 381 0 4 589 0 1 354 0 1 971 0 8 695 0 11 126 chain 226133 chr8 146364022 + 122103634 122106116 L1PA3long 6157 + 3669 6157 17523 277 0 1 1357 0 4 705 1 2 142 chain 6281 chr8 146364022 + 122124615 122124690 MSTA 426 - 327 402 182940 75 chain 23099 chr8 146364022 + 122126212 122126465 AluYk4 311 - 27 280 115152 253 chain 31424 chr8 146364022 + 122132824 122133236 MSTA 426 - 0 410 81776 215 8 5 138 1 2 50 chain 239035 chr8 146364022 + 122134220 122136918 L1PA4 6152 - 13 2718 16827 300 0 1 450 1 0 903 0 2 131 0 4 409 0 1 504 chain 111027 chr8 146364022 + 122136918 122138227 L1PA4 6152 + 2209 3466 33924 295 0 1 385 58 3 278 1 0 79 0 3 213 chain 16010 chr8 146364022 + 122149883 122150213 THE1A 353 + 0 353 138326 18 2 0 29 0 1 63 0 2 6 89 120 49 0 1 15 10 0 49 chain 13063 chr8 146364022 + 122154013 122154243 L1PA14 3548 + 3235 3456 147976 97 20 15 14 0 1 17 4 2 12 1 0 5 1 0 15 4 3 40 chain 87650 chr8 146364022 + 122160961 122162039 L1PA8 5853 - 1054 2146 40512 516 0 2 65 2 1 73 14 25 124 0 2 284 chain 86150 chr8 146364022 + 122162044 122163106 L1PA8 5853 + 4795 5853 41094 214 0 2 553 1 0 44 1 0 69 3 2 11 1 0 50 2 1 19 2 1 92 chain 15071 chr8 146364022 + 122167900 122168202 MER4B 649 + 69 408 141108 18 39 38 36 19 18 19 1 24 71 1 2 49 6 21 43 chain 4100 chr8 146364022 + 122168997 122169048 MADE1 96 + 45 96 205941 51 chain 6817 chr8 146364022 + 122192274 122192442 L1PB1 5432 + 5282 5427 178821 14 3 0 6 19 9 16 2 0 6 1 0 13 2 0 24 1 0 18 8 7 9 1 0 18 2 0 5 chain 5896 chr8 146364022 + 122199037 122199110 MADE1 96 + 7 96 186217 22 0 16 51 chain 2974 chr8 146364022 + 122205769 122205800 MER81 114 + 51 82 225547 31 chain 19307 chr8 146364022 + 122241504 122241786 AluSc8 310 + 28 309 129223 102 25 29 119 6 1 30 chain 26601 chr8 146364022 + 122242490 122242964 L1PB1 5432 - 41 477 97654 21 1 0 24 7 5 14 11 0 22 10 1 8 4 0 16 1 0 44 7 6 9 2 1 53 2 0 8 2 0 3 2 0 9 1 0 32 5 0 7 0 5 83 2 1 64 chain 11637 chr8 146364022 + 122257899 122258030 L1PA5 6144 + 5960 6091 153744 131 chain 46544 chr8 146364022 + 122260100 122260639 L1PA7 6471 + 5919 6459 61561 185 0 1 354 chain 167642 chr8 146364022 + 122289494 122291366 L1PA5 6144 - 0 1869 22323 853 1 0 645 1 0 257 2 1 113 chain 437880 chr8 146364022 + 122342130 122347047 L1HS 6032 - 1110 6020 9106 1787 0 4 70 0 1 475 5 0 1673 1 0 139 9 5 512 5 4 28 1 0 212 chain 25456 chr8 146364022 + 122358375 122358658 L1PA4 6152 + 5868 6152 102429 170 0 1 113 chain 12833 chr8 146364022 + 122383172 122383356 MER30 238 - 1 200 148916 25 0 1 4 1 0 11 3 0 66 7 25 67 chain 30940 chr8 146364022 + 122390576 122390981 MER51B 395 + 4 395 82617 35 13 0 206 13 12 138 chain 22041 chr8 146364022 + 122402130 122402402 AluSc 308 - 14 288 120063 15 0 2 257 chain 48992 chr8 146364022 + 122404225 122404840 L1PA8 5853 + 5244 5853 59757 24 0 1 295 1 0 44 2 0 71 1 0 5 9 8 48 2 1 19 2 1 92 chain 558994 chr8 146364022 + 122430112 122436275 L1PA3long 6157 + 0 6157 419 369 8 0 420 1 0 452 2 0 480 0 1 1455 3 1 765 0 1 1366 0 4 509 0 1 333 chain 22087 chr8 146364022 + 122455723 122455984 AluSp 311 + 29 290 119852 261 chain 32501 chr8 146364022 + 122470747 122471179 LOR1b 457 - 16 457 80021 298 2 0 87 0 2 9 5 14 31 chain 26283 chr8 146364022 + 122494055 122494347 AluYf4 310 - 17 310 98891 95 0 1 197 chain 109810 chr8 146364022 + 122520258 122521466 L1PA2 6032 - 1 1210 34256 156 0 1 1052 chain 52102 chr8 146364022 + 122521466 122522028 L1PA2 6032 + 4256 4823 57314 121 0 5 441 chain 93378 chr8 146364022 + 122530608 122531645 L1PA3long 6157 - 13 1039 38543 777 11 0 249 chain 18787 chr8 146364022 + 122533898 122534169 AluSp 311 + 9 285 130717 44 33 39 96 1 0 97 chain 25374 chr8 146364022 + 122539474 122539764 L1PA7 6471 - 3 293 102810 290 chain 20288 chr8 146364022 + 122554726 122555019 THE1B 368 - 61 360 126258 67 1 0 10 1 0 4 8 12 14 5 10 21 1 0 161 chain 36829 chr8 146364022 + 122557236 122557693 L1PA8A 6298 + 5385 5848 73765 102 0 4 221 0 2 134 chain 12623 chr8 146364022 + 122584637 122584919 L1PB1 5432 + 5158 5420 149757 11 3 1 50 20 18 41 2 1 16 20 13 18 8 5 11 7 5 22 1 0 22 1 0 12 1 0 16 chain 36639 chr8 146364022 + 122592465 122592979 L1PA11 4918 - 432 948 74046 12 2 0 79 1 0 50 20 14 37 0 2 180 0 1 64 5 13 64 chain 17643 chr8 146364022 + 122616747 122616951 L1PA5 6144 + 5932 6136 133865 204 chain 12141 chr8 146364022 + 122617190 122617331 L1PA5 6144 + 5999 6140 151644 141 chain 26644 chr8 146364022 + 122637053 122637360 AluYk4 311 + 0 304 97499 132 3 0 172 chain 21141 chr8 146364022 + 122660942 122661242 AluSq2 311 - 18 311 123404 32 0 1 104 30 22 7 1 0 7 0 1 119 chain 65897 chr8 146364022 + 122668764 122669486 SVA_D 2077 - 21 968 50142 31 1 0 586 0 226 104 chain 11544 chr8 146364022 + 122679322 122679599 LTR12C 1709 - 623 781 154126 16 44 3 16 82 4 119 chain 67996 chr8 146364022 + 122744197 122745238 L1PB3 3668 - 55 1084 49249 15 40 32 37 3 1 20 0 6 20 20 4 87 2 1 100 1 0 101 1 0 102 3 5 38 0 4 10 0 9 23 16 10 49 1 0 18 0 1 113 0 1 92 0 2 30 3 0 17 1 0 11 0 3 67 chain 25803 chr8 146364022 + 122746234 122746534 AluYc3 301 + 0 301 100856 120 0 1 180 chain 10972 chr8 146364022 + 122767575 122767751 MSTA 426 + 0 199 156306 56 1 0 44 20 44 55 chain 29963 chr8 146364022 + 122793714 122794737 LTR7B 505 - 9 505 84926 42 14 13 47 0 1 31 2 0 76 0 1 5 8 10 17 3 28 30 583 20 60 0 10 105 chain 38865 chr8 146364022 + 122817248 122817710 LTR2 463 + 0 463 70923 359 15 16 88 chain 42017 chr8 146364022 + 122820956 122821784 MER41A 554 + 0 534 66601 273 0 1 139 301 0 13 0 1 41 8 13 53 chain 3333 chr8 146364022 + 122827871 122827908 tRNA-Arg-AGA 37 + 0 37 218363 37 chain 32364 chr8 146364022 + 122828055 122828529 LTR7B 505 - 0 505 80249 50 15 14 79 2 0 82 29 0 28 6 68 94 0 1 89 chain 40229 chr8 146364022 + 122829911 122830417 LTR10D 510 + 0 510 68989 71 3 7 25 9 8 120 1 0 38 0 2 239 chain 19839 chr8 146364022 + 122831274 122831599 MER4E 760 - 7 316 127684 15 0 2 72 6 7 24 5 2 97 40 22 5 0 2 61 chain 52365 chr8 146364022 + 122835346 122836019 MER4E1 777 - 8 777 57385 12 0 1 45 0 46 78 8 46 75 3 4 303 0 10 149 chain 24641 chr8 146364022 + 122839996 122840282 AluSp 311 - 11 297 106773 286 chain 27174 chr8 146364022 + 122855282 122855647 THE1C 375 + 0 363 95684 16 1 0 109 3 0 99 4 7 43 0 1 4 4 3 67 1 0 14 chain 4321 chr8 146364022 + 122885068 122885114 MADE1 96 + 50 96 202946 46 chain 363520 chr8 146364022 + 122920486 122925565 L1PA8 5853 + 50 5853 11275 22 2 0 10 1 0 13 52 16 170 0 4 17 17 6 154 0 1 173 0 1 282 1 0 97 0 2 506 1 0 210 0 2 42 0 3 125 0 2 47 6 20 51 21 5 12 4 11 115 5 6 126 5 6 166 0 1 7 0 4 48 330 0 385 0 1 295 11 0 59 1 1094 88 0 1 236 0 5 19 1 2 14 10 2 63 2 1 211 2 0 147 23 27 136 1 2 61 0 2 180 1 0 40 11 9 65 2 1 9 1 0 56 1 0 16 1 0 93 chain 116720 chr8 146364022 + 122960094 122961781 LTR12C 1709 + 0 1709 32218 64 19 20 189 2 1 116 1 0 73 52 11 92 12 14 24 0 1 46 3 122 64 1 0 275 37 6 91 0 1 5 44 13 154 3 8 237 1 0 82 chain 2119 chr8 146364022 + 122961127 122961164 LTR12C 1709 + 793 830 134208 37 chain 61010 chr8 146364022 + 122966157 122966861 L1PA5 6144 - 3 794 52328 49 1 3 227 0 3 372 0 82 55 chain 30403 chr8 146364022 + 123002055 123002495 MER57A1 433 + 0 433 83678 274 15 16 77 22 13 43 0 1 9 chain 506918 chr8 146364022 + 123013511 123019469 L1PA6 6164 + 0 6161 6403 236 0 2 161 1 16 102 0 2 17 1 2 29 1 0 884 0 2 532 2 0 558 1 0 259 0 2 418 0 1 163 2 174 986 0 1 131 5 8 84 0 2 779 0 3 459 5 6 142 chain 29261 chr8 146364022 + 123030851 123031259 LTR7B 505 - 0 505 87733 51 14 13 79 2 0 47 0 25 8 0 2 30 12 75 57 1 11 107 chain 14211 chr8 146364022 + 123047048 123047257 L1PA8 5853 - 0 205 143843 6 1 0 87 1 0 19 2 1 61 2 1 30 chain 515927 chr8 146364022 + 123063312 123069735 L1PA7 6471 + 0 6461 5581 405 2 3 106 9 10 61 1 8 78 22 23 234 5 0 6 5 10 65 0 1 22 0 7 105 2 0 13 1 3 149 0 1 74 6 7 77 0 1 94 1 0 196 2 1 19 1 2 360 1 2 341 0 8 149 2 0 248 5 1 120 3 4 462 0 4 60 4 8 297 4 5 181 1 0 198 0 1 344 0 1 99 0 4 271 1 0 83 0 1 323 5 0 48 0 1 88 0 1 130 0 4 55 1 0 456 1 0 12 0 1 146 18 0 7 0 18 138 chain 19141 chr8 146364022 + 123081623 123081874 MER4D1 891 - 7 257 129706 61 2 1 18 1 0 53 0 1 116 chain 29302 chr8 146364022 + 123086444 123086829 MER4A1 472 + 30 434 87560 188 13 34 84 1 0 76 6 5 17 chain 11048 chr8 146364022 + 123099699 123099867 L1PA8 5853 - 0 163 156026 11 2 0 81 2 1 15 11 10 36 1 0 9 chain 6136 chr8 146364022 + 123111128 123111238 L1PA2 6032 + 5959 6032 184111 62 37 0 11 chain 3911 chr8 146364022 + 123134355 123134405 L1MA4 2864 - 63 111 208683 34 2 0 14 chain 25769 chr8 146364022 + 123189977 123190251 AluYa5 310 + 36 310 101012 274 chain 34224 chr8 146364022 + 123212036 123212456 L1P3 4156 + 3647 4107 77318 159 0 4 21 0 32 139 1 5 100 chain 207760 chr8 146364022 + 123212459 123215047 L1PA3long 6157 + 3552 6157 18658 118 32 32 190 1 0 445 0 1 297 1 0 329 5 12 279 0 1 54 0 4 54 0 4 14 16 18 753 chain 32912 chr8 146364022 + 123215068 123215448 L1PA7 6471 + 6086 6466 79351 380 chain 41957 chr8 146364022 + 123244335 123244898 LTR10A 586 + 0 565 66678 209 0 1 208 7 10 75 12 10 52 chain 551510 chr8 146364022 + 123256657 123262675 L1PA2 6032 + 0 6030 1250 567 0 4 3713 0 5 893 1 5 825 2 1 17 chain 29153 chr8 146364022 + 123269516 123269820 AluYb8 318 + 0 304 88297 304 chain 19398 chr8 146364022 + 123273125 123273547 MSTB 430 - 0 430 128954 153 100 102 23 62 64 70 0 4 14 chain 21098 chr8 146364022 + 123274192 123274474 L1PA7 6471 - 2 284 123557 159 17 16 30 0 1 76 chain 18798 chr8 146364022 + 123279403 123279776 THE1D 372 - 0 372 130682 114 0 2 32 1 0 24 12 0 7 13 27 28 1 5 20 29 33 6 3 0 27 22 13 34 chain 289930 chr8 146364022 + 123286303 123290273 L1PA10 4194 + 175 4150 14023 15 2 0 9 3 0 13 39 30 8 1 0 22 2 0 14 1 0 8 46 29 12 2 0 21 1 0 7 4 7 10 5 0 15 7 0 8 1 0 6 0 1 74 2 0 260 0 6 187 9 8 78 7 10 249 5 10 56 2 0 291 7 9 105 0 1 4 9 8 182 3 4 538 0 24 61 1 5 43 0 1 33 3 0 33 7 18 255 10 1 236 0 1 263 1 2 393 0 12 245 3 0 26 0 1 7 chain 15980 chr8 146364022 + 123291973 123292256 L1MA5A 2387 + 2047 2296 138408 22 1 0 37 2 1 48 2 0 59 6 3 15 36 9 55 chain 23690 chr8 146364022 + 123299421 123299778 THE1B 368 - 0 368 112084 73 3 11 40 3 2 12 4 3 13 1 5 9 7 10 21 1 0 73 1 0 96 chain 155835 chr8 146364022 + 123308749 123310537 L1HS 6032 - 3441 5235 23867 323 0 4 286 0 1 584 3 4 592 chain 160818 chr8 146364022 + 123310537 123312307 L1PA3long 6157 + 4385 6157 23224 567 0 1 435 0 1 768 chain 497835 chr8 146364022 + 123338909 123344331 L1PA2 6032 - 0 5429 6966 334 5 6 1181 1 0 319 0 1 473 0 1 391 0 1 185 0 4 2533 chain 20460 chr8 146364022 + 123364335 123364708 THE1B 368 + 2 368 125731 17 1 0 28 0 1 12 74 75 34 31 24 101 1 0 74 chain 23682 chr8 146364022 + 123378594 123379064 MLT2A2 560 + 0 560 112141 180 1 0 16 96 194 15 18 29 71 0 2 7 20 0 46 chain 26148 chr8 146364022 + 123379559 123379958 THE1A 353 - 0 353 99409 154 1 0 5 3 0 6 6 9 68 45 0 111 chain 4749 chr8 146364022 + 123382461 123382513 L1PA5 6144 - 158 210 197924 52 chain 11163 chr8 146364022 + 123382513 123382635 L1PA5 6144 + 6013 6135 155575 122 chain 25939 chr8 146364022 + 123403189 123403587 THE1C 375 + 0 375 100254 15 2 0 28 29 10 72 9 6 55 0 1 90 1 2 71 1 0 25 chain 21381 chr8 146364022 + 123412819 123413067 L1PA6 6164 + 5914 6162 122580 248 chain 15811 chr8 146364022 + 123419274 123419479 L1PA8 5853 + 5646 5847 138923 36 1 0 7 1 0 51 2 1 19 1 0 87 chain 39191 chr8 146364022 + 123422530 123423006 L1PA7 6471 - 4 477 70469 8 3 0 465 chain 20073 chr8 146364022 + 123438165 123438380 L1PA3long 6157 - 3 218 126907 215 chain 3317 chr8 146364022 + 123447645 123447682 MER46C 351 + 267 304 218650 37 chain 23027 chr8 146364022 + 123452470 123452733 AluYf4 310 + 43 307 115505 88 0 1 175 chain 59145 chr8 146364022 + 123457318 123457972 L1PA3long 6157 + 5504 6157 53307 636 1 0 17 chain 2973 chr8 146364022 + 123463713 123463814 MLT1D 503 - 31 133 225584 17 56 57 28 chain 20288 chr8 146364022 + 123463842 123464202 THE1D 372 - 0 362 126259 99 0 1 38 4 10 27 32 35 18 5 9 72 16 7 41 3 0 5 chain 28770 chr8 146364022 + 123469369 123469686 L1PA3long 6157 - 0 320 90019 30 0 3 287 chain 28718 chr8 146364022 + 123481031 123481527 L1PREC2 3366 + 144 628 90259 26 1 0 4 6 8 15 35 29 6 1 0 15 1 0 10 2 0 32 1 0 111 3 0 66 22 23 139 chain 37514 chr8 146364022 + 123489069 123489482 L1PA5 6144 + 5731 6144 72795 413 chain 48059 chr8 146364022 + 123499405 123499997 L1PA7 6471 - 10 610 60437 131 20 21 162 0 1 13 0 6 266 chain 51862 chr8 146364022 + 123506017 123506797 L1PA14 3548 - 98 852 57710 36 1 0 10 7 6 5 1 0 16 4 2 26 12 8 9 1 0 102 10 9 84 1 0 6 2 0 13 15 11 106 2 0 48 2 0 14 8 6 19 2 0 218 chain 17032 chr8 146364022 + 123541159 123541366 L1PA7 6471 - 4 212 135509 151 0 1 56 chain 5557 chr8 146364022 + 123571644 123571732 L1PB3 3668 + 3482 3566 189500 21 2 0 25 9 7 31 chain 28362 chr8 146364022 + 123577412 123577761 L1PA6 6164 + 5807 6156 91723 195 1 9 11 8 0 134 chain 18365 chr8 146364022 + 123583021 123583250 L1PA7 6471 - 1 226 131894 10 3 0 144 3 2 69 chain 25223 chr8 146364022 + 123583644 123584009 THE1D 372 - 0 372 103621 13 0 3 161 10 15 4 1 0 11 4 5 119 7 5 4 0 1 31 chain 22901 chr8 146364022 + 123603783 123604660 L1PB1 5432 + 4977 5416 116099 34 6 8 84 412 3 8 1 0 24 1 0 8 1 0 12 4 0 9 2 0 53 21 21 36 10 9 10 3 0 6 16 6 19 3 1 4 1 0 14 2 0 19 6 5 21 1 0 13 1 0 12 chain 15424 chr8 146364022 + 123675165 123675330 L1PA2 6032 - 284 449 140115 165 chain 24551 chr8 146364022 + 123675330 123675598 L1PA2 6032 + 5761 6029 107244 268 chain 23974 chr8 146364022 + 123691992 123692290 AluSz6 309 + 11 309 110488 298 chain 25872 chr8 146364022 + 123694981 123695294 AluY 311 + 0 307 100556 123 6 0 184 chain 4314 chr8 146364022 + 123709662 123709749 Tigger3b 1229 - 1143 1229 203051 33 16 18 5 3 0 30 chain 5016 chr8 146364022 + 123716411 123716469 MER5A1 166 + 32 90 194968 58 chain 30427 chr8 146364022 + 123716756 123717074 AluYb8 318 + 0 318 83588 318 chain 123051 chr8 146364022 + 123723735 123725622 THE1A-int 1579 + 0 1570 30027 333 0 8 22 325 0 174 0 1 45 0 1 49 12 1 74 0 8 295 0 1 181 0 1 159 0 1 105 2 1 47 1 0 63 chain 28340 chr8 146364022 + 123725630 123725984 THE1A 353 + 0 353 91791 110 1 0 243 chain 22761 chr8 146364022 + 123731095 123731384 THE1A-int 1579 + 0 291 116779 114 4 5 85 1 2 85 chain 34330 chr8 146364022 + 123738207 123738654 MLT2A2 560 + 0 560 77169 180 1 0 115 0 98 9 0 11 45 0 5 97 chain 52073 chr8 146364022 + 123779918 123780520 L1PA7 6471 + 5868 6470 57580 602 chain 27468 chr8 146364022 + 123820500 123820863 THE1C 375 - 12 375 94749 14 1 0 100 3 2 41 0 3 78 3 0 54 5 7 64 chain 28306 chr8 146364022 + 123827675 123828044 Tigger1 2417 + 1714 2088 91920 69 1 2 241 5 9 53 chain 5905 chr8 146364022 + 123842220 123842291 MER41A 554 + 0 71 186145 71 chain 27898 chr8 146364022 + 123842291 123842678 MER48 407 - 0 407 93376 250 9 29 20 0 13 9 13 0 86 chain 190760 chr8 146364022 + 123844677 123848254 HERVH48-int 3304 - 59 3116 19975 26 97 72 64 60 44 68 2 0 3 1 0 45 1 0 4 6 4 19 1 0 10 13 5 23 10 8 8 3 0 27 92 71 9 1 0 9 16 4 5 2 0 11 2 0 5 2 0 19 2 0 30 15 12 4 1 0 44 1 0 19 8 6 165 5 6 55 1 0 45 6 5 10 6 5 59 2 1 4 1 0 18 1 0 101 303 0 161 2 0 273 1 0 89 1 0 221 7 5 12 1 0 120 13 7 5 1 0 5 2 0 16 1 0 26 2 0 21 1 0 15 1 0 4 2 0 22 2 0 3 3 0 32 2 0 13 5 4 17 1 0 11 3 0 103 40 32 70 1 0 31 1 0 29 0 4 7 2 0 67 3 1 4 1 0 15 4 0 19 10 31 10 30 0 14 2 1 13 3 1 10 1 0 79 13 7 7 3 0 16 1 0 64 16 14 66 1 0 4 55 36 25 10 5 27 2 0 11 chain 33046 chr8 146364022 + 123848696 123849106 MER48 407 - 2 407 79145 37 8 0 285 1 4 79 chain 35788 chr8 146364022 + 123849106 123849567 MER41A 554 + 66 553 75152 158 1 0 163 1 23 58 0 5 80 chain 22357 chr8 146364022 + 123872212 123872585 THE1D 372 - 0 372 118677 126 2 8 13 1 0 25 32 34 64 18 22 6 3 0 23 9 0 51 chain 18017 chr8 146364022 + 123880751 123880960 AluY 311 + 93 305 132809 39 0 1 147 0 2 23 chain 37598 chr8 146364022 + 123883502 123883914 L1PA5 6144 + 5719 6131 72687 412 chain 41430 chr8 146364022 + 123901281 123901887 L1MA5 2750 - 104 727 67380 15 1 0 41 22 36 376 1 0 67 1 0 7 3 0 17 18 27 37 chain 28258 chr8 146364022 + 123906714 123907037 L1PA4 6152 + 5820 6143 92083 323 chain 3611 chr8 146364022 + 123953098 123953136 MIRb 242 + 94 132 213466 38 chain 27034 chr8 146364022 + 123962484 123962829 L1PA8 5853 + 5515 5853 96163 49 1 0 46 2 0 72 1 0 5 2 1 52 2 1 19 1 0 93 chain 23876 chr8 146364022 + 123973705 123974070 THE1D 372 - 0 361 111051 148 1 0 24 29 34 87 4 5 17 10 1 45 chain 6009 chr8 146364022 + 123984674 123984781 MIR 256 + 40 148 185142 49 23 24 35 chain 110469 chr8 146364022 + 124005047 124006382 L1PA6 6164 - 2 1282 34083 411 0 1 461 59 2 384 0 1 20 chain 118456 chr8 146364022 + 124010641 124012172 L1PA8 5853 - 0 1527 31629 93 1 0 13 1 0 4 8 7 44 12 10 74 2 0 44 1 0 43 1 0 347 16 17 21 0 8 118 2 0 6 13 9 49 7 8 476 0 1 135 chain 24106 chr8 146364022 + 124023704 124023998 AluSp 311 - 9 302 109711 170 1 0 123 chain 8478 chr8 146364022 + 124056956 124057049 HY4 93 + 0 93 168410 93 chain 23632 chr8 146364022 + 124120929 124121308 THE1D 372 - 0 372 112408 32 2 0 138 3 0 8 9 11 6 3 0 15 2 1 25 0 8 23 3 4 53 11 2 46 chain 28224 chr8 146364022 + 124129714 124130020 AluYg6 310 + 2 308 92214 306 chain 3706 chr8 146364022 + 124158707 124158780 L1MB7 1623 - 104 171 211852 20 13 8 11 1 0 28 chain 3864 chr8 146364022 + 124169498 124169542 tRNA-Met_ 45 - 1 45 209394 44 chain 16714 chr8 146364022 + 124180415 124180653 MER30 238 + 0 238 136357 103 12 15 81 3 0 39 chain 3198 chr8 146364022 + 124187102 124187137 MIR 256 + 93 128 220950 35 chain 27025 chr8 146364022 + 124201716 124202162 MER4A1 472 + 0 472 96206 12 11 13 16 0 7 91 0 1 44 4 2 7 2 0 7 28 32 151 7 21 47 3 5 16 chain 25048 chr8 146364022 + 124240578 124240870 AluSp 311 + 0 293 104554 84 0 1 208 chain 19796 chr8 146364022 + 124250344 124250639 THE1B 368 + 0 302 127826 131 9 13 23 2 0 7 1 2 14 0 2 22 0 4 12 1 0 12 2 1 59 chain 22537 chr8 146364022 + 124276805 124277078 AluSg7 307 - 16 287 117862 164 0 1 3 3 0 103 chain 26834 chr8 146364022 + 124300258 124300561 AluSq10 312 + 2 306 96861 99 0 1 204 chain 137621 chr8 146364022 + 124326629 124328826 SVA_D 2077 + 375 2065 26542 372 415 0 52 1 0 12 26 19 8 1 0 13 37 0 27 1 0 25 2 0 9 2 0 35 11 0 28 49 0 58 3 50 252 1 0 4 37 10 8 1 0 31 0 1 4 9 8 43 0 1 620 chain 18457 chr8 146364022 + 124327009 124327416 SVA_D 2077 + 832 1136 60392 76 0 82 30 263 78 38 chain 16299 chr8 146364022 + 124327174 124327372 SVA_F 1814 + 885 1221 137483 60 0 142 121 4 0 13 chain 1179 chr8 146364022 + 124327481 124327507 SVA_D 2077 + 1201 1228 60392 18 0 1 8 chain 1678 chr8 146364022 + 124327529 124327566 SVA_D 2077 + 1250 1287 60392 37 chain 3554 chr8 146364022 + 124327706 124327755 SVA_D 2077 + 1329 1378 173914 49 chain 2449 chr8 146364022 + 124328073 124328110 SVA_D 2077 + 1135 1172 129535 37 chain 6302 chr8 146364022 + 124342538 124342613 Tigger2 2703 - 1567 1642 182787 75 chain 4954 chr8 146364022 + 124354653 124354715 U6 107 + 0 64 195652 42 0 2 20 chain 4253 chr8 146364022 + 124360307 124360358 MADE1 96 + 45 96 203843 51 chain 183867 chr8 146364022 + 124376614 124379115 L1PB1 5432 + 2912 5422 20603 126 1 2 63 1 0 387 1 0 36 0 2 120 11 8 74 1 2 204 1 0 57 0 2 171 0 10 181 2 0 264 0 1 203 15 22 232 4 36 19 1 0 13 1 0 9 10 6 5 2 0 11 0 2 40 27 16 41 35 21 29 11 8 11 2 0 24 1 0 21 1 0 13 1 0 18 chain 59437 chr8 146364022 + 124394873 124395584 L1PA7 6471 + 5745 6459 53150 108 5 8 254 1 0 21 0 1 322 chain 21793 chr8 146364022 + 124411827 124412101 AluSp 311 + 13 289 121042 39 5 7 230 chain 15152 chr8 146364022 + 124418855 124419076 AluJb 308 + 81 302 140905 69 2 0 5 15 17 130 chain 41550 chr8 146364022 + 124422873 124423357 LTR17 781 + 255 730 67224 44 10 0 27 0 1 403 chain 26903 chr8 146364022 + 124423681 124424005 LTR17 781 + 0 326 96617 119 0 9 57 0 3 117 10 0 21 chain 28288 chr8 146364022 + 124427102 124427497 L1PBa 3878 - 2160 2548 91986 74 0 2 28 22 9 136 0 4 135 chain 16507 chr8 146364022 + 124432445 124432798 L1PA15 4387 - 21 354 136896 10 1 0 28 20 12 17 4 1 27 18 15 39 2 1 10 0 2 5 18 14 42 14 13 26 1 0 71 chain 16674 chr8 146364022 + 124446054 124446276 MER30 238 + 0 235 136480 98 11 0 16 0 24 97 chain 23532 chr8 146364022 + 124449687 124449971 AluY 311 + 26 311 112947 106 0 1 178 chain 8442 chr8 146364022 + 124455213 124455746 MER66B 489 + 211 443 168613 42 411 110 80 chain 5386 chr8 146364022 + 124467279 124467347 U4 144 - 75 144 191128 58 1 2 9 chain 18803 chr8 146364022 + 124476059 124476359 THE1B 368 + 0 307 130669 5 0 3 161 1 0 8 19 23 14 2 5 13 13 11 64 chain 36167 chr8 146364022 + 124491761 124492311 LTR9B 643 + 0 558 74682 72 0 2 29 7 15 85 4 5 17 7 8 180 32 31 62 1 8 11 10 0 33 chain 39840 chr8 146364022 + 124497806 124498264 LTR2 463 + 0 463 69554 55 0 3 56 0 1 253 0 1 94 chain 24560 chr8 146364022 + 124503839 124504226 THE1A 353 + 0 353 107195 105 32 36 61 1 0 42 0 1 77 38 0 31 chain 11848 chr8 146364022 + 124562385 124562523 L1PA7 6471 - 5 143 152835 138 chain 25211 chr8 146364022 + 124564049 124564337 L1PA5 6144 + 5856 6144 103683 288 chain 8219 chr8 146364022 + 124587838 124588021 L1PB1 5432 + 5263 5424 169835 18 1 0 12 27 15 18 9 6 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 97983 chr8 146364022 + 124594550 124595756 L1PA8 5853 + 4653 5853 37282 354 0 2 145 1 0 199 0 2 209 2 1 43 2 0 58 1 0 13 1 0 14 2 0 46 3 2 21 1 0 91 chain 68613 chr8 146364022 + 124610399 124611165 L1PA5 6144 + 5366 6132 48977 267 0 1 400 1 0 98 chain 9861 chr8 146364022 + 124617774 124617917 MSTA 426 + 263 414 161276 37 14 22 92 chain 30137 chr8 146364022 + 124619636 124620047 L1P3 4156 + 3328 3743 84358 154 0 1 35 0 1 8 1 0 4 4 9 35 3 1 167 chain 54457 chr8 146364022 + 124623312 124623949 L1PA7 6471 - 1 639 56066 317 0 1 320 chain 4338 chr8 146364022 + 124637620 124637837 MER58A 224 + 0 223 202737 16 149 155 52 chain 10452 chr8 146364022 + 124662448 124662619 MER30 238 - 0 191 158480 43 16 16 49 5 22 24 0 3 34 chain 24794 chr8 146364022 + 124684987 124685345 THE1B 368 - 0 368 105926 56 7 1 7 0 5 96 7 5 26 11 9 99 5 20 44 chain 23917 chr8 146364022 + 124691459 124691813 THE1D 372 + 0 365 110830 160 0 1 8 18 27 10 13 15 4 1 0 140 chain 10043 chr8 146364022 + 124699568 124699704 MER85 139 + 4 138 160361 83 1 0 14 5 4 33 chain 35974 chr8 146364022 + 124719677 124720086 L1PA7 6471 + 6052 6461 74921 409 chain 10388 chr8 146364022 + 124721746 124721873 MER85 139 - 2 139 158748 38 0 10 89 chain 28447 chr8 146364022 + 124738907 124739434 L1PB1 5432 + 4929 5423 91384 174 1 2 10 8 5 14 1 0 12 1 0 10 2 0 3 2 0 9 14 12 40 2 1 15 1 0 45 1 0 4 39 28 14 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 26931 chr8 146364022 + 124753919 124754246 AluYk4 311 + 0 311 96510 126 15 0 134 2 1 50 chain 14255 chr8 146364022 + 124754469 124754680 MER47A 366 - 52 262 143702 11 2 1 29 12 9 5 0 3 152 chain 33766 chr8 146364022 + 124758557 124758933 L1PA5 6144 + 5764 6140 77990 376 chain 29235 chr8 146364022 + 124765237 124765549 AluYb8 318 + 0 311 87884 132 1 0 179 chain 21397 chr8 146364022 + 124766028 124766367 L1MA6 2487 + 997 1325 122519 80 0 9 11 18 0 62 1 0 94 21 20 52 chain 10395 chr8 146364022 + 124833662 124833776 L1PA7 6471 - 274 388 158717 114 chain 23306 chr8 146364022 + 124833777 124834052 L1PA7 6471 + 6192 6467 114171 275 chain 34705 chr8 146364022 + 124871792 124872177 L1PA2 6032 - 0 386 76613 14 0 2 128 1 0 242 chain 556445 chr8 146364022 + 124872226 124878247 L1PA2 6032 - 7 6032 678 1795 0 4 2410 0 2 270 2 0 1544 chain 301391 chr8 146364022 + 124910557 124915304 L1PB1 5432 - 19 4231 13353 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 20 13 16 2 1 40 5 4 16 1 0 35 1 2 15 2 0 9 26 20 24 3 0 9 246 22 361 0 1 93 7 0 43 3 0 87 33 34 134 0 10 111 0 6 246 6 7 215 9 11 83 0 1 26 0 2 143 0 4 18 6 17 83 24 0 505 1 0 7 0 1 4 3 0 240 2 6 43 0 1 37 0 3 79 6 0 143 0 3 14 308 0 436 0 1 193 1 18 7 0 5 52 0 4 97 70 56 101 12 15 46 0 2 27 chain 41939 chr8 146364022 + 124915370 124915881 MER75 514 + 0 510 66700 499 1 0 11 chain 3175 chr8 146364022 + 124939233 124939273 MIR 256 - 11 62 221418 8 0 11 32 chain 4642 chr8 146364022 + 124975167 124975247 MER49 923 - 827 923 199151 39 15 31 26 chain 218671 chr8 146364022 + 125001845 125005400 L1PB3 3668 - 44 3277 17962 6 6 0 4 1 0 15 7 4 13 1 0 13 7 3 37 7 4 21 2 1 8 1 0 13 20 4 77 7 1 8 0 5 97 1 0 6 320 8 190 2 1 24 1 0 49 7 10 15 2 0 13 0 2 80 0 3 54 6 0 7 3 9 140 7 13 122 0 1 177 1 0 27 0 3 127 0 4 86 11 6 97 0 1 39 0 13 232 23 16 55 6 0 62 0 6 357 8 9 11 6 2 10 2 0 228 6 1 82 0 2 65 30 27 71 3 11 131 1 5 16 1 3 42 0 3 39 0 1 6 0 2 77 chain 32223 chr8 146364022 + 125020196 125020752 L1PB1 5432 - 5 520 80478 4 1 0 7 1 0 12 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 28 10 0 3 4 0 15 1 0 43 20 18 55 2 0 6 2 0 3 2 0 9 1 0 9 1 0 24 1 0 7 11 4 95 0 2 94 chain 41794 chr8 146364022 + 125020752 125021358 L1PB1 5432 + 4344 4900 66907 164 0 4 97 0 4 17 1 5 127 68 5 37 2 3 93 chain 25063 chr8 146364022 + 125032212 125032574 THE1B 368 + 0 368 104495 41 5 20 53 0 1 81 5 3 50 0 1 8 7 1 31 3 0 78 chain 106726 chr8 146364022 + 125041023 125042389 L1PA8 5853 - 0 1381 35054 92 2 1 18 3 2 52 1 0 6 1 0 18 0 8 48 2 0 44 1 0 71 2 0 5 0 2 251 0 8 138 1 5 73 0 2 537 chain 41192 chr8 146364022 + 125123658 125124200 MER41A 554 - 0 554 67653 73 7 12 125 0 1 7 0 3 77 4 0 39 12 18 114 0 1 84 chain 107432 chr8 146364022 + 125200032 125201936 L1PA16 3655 - 36 1599 34854 14 49 27 112 6 14 39 1 2 117 9 7 69 13 7 9 1 0 115 5 0 165 1 0 24 1 0 97 0 1 35 0 1 90 1 0 65 1 0 1 314 0 40 17 16 200 20 22 55 0 1 218 chain 3365 chr8 146364022 + 125212872 125212907 MER5A 189 + 0 35 217763 35 chain 6126 chr8 146364022 + 125219038 125219122 MER44B 551 - 1 82 184226 11 3 0 70 chain 2102 chr8 146364022 + 125233462 125233501 Charlie1a 1436 - 1121 1160 237621 18 2 3 4 1 0 14 chain 26145 chr8 146364022 + 125234070 125234367 AluYk4 311 + 1 298 99423 297 chain 51914 chr8 146364022 + 125243976 125244669 L1PB3 3668 + 1643 2309 57674 100 9 8 4 0 1 172 1 0 187 8 0 100 30 12 82 chain 532456 chr8 146364022 + 125251823 125258243 L1PA7 6471 - 6 6468 3915 8 3 0 464 0 3 373 0 3 8 0 4 303 0 1 999 2 0 93 0 1 573 0 1 82 1 5 440 1 5 339 7 8 120 2 1 109 0 2 17 0 2 72 0 3 141 1 0 549 7 23 499 0 4 500 18 12 246 2 0 48 0 1 235 0 7 158 chain 9807 chr8 146364022 + 125271489 125271623 L1PA16 3655 - 62 193 161561 15 6 3 113 chain 26097 chr8 146364022 + 125296969 125297319 L1PA8 5853 - 0 343 99632 92 2 1 18 3 2 52 1 0 9 9 8 62 2 0 45 1 0 54 chain 28351 chr8 146364022 + 125312863 125313166 AluYf4 310 - 7 310 91761 303 chain 11666 chr8 146364022 + 125330139 125330296 MER30 238 - 2 173 153616 46 3 0 61 6 23 41 chain 18417 chr8 146364022 + 125340380 125340592 AluSc 308 + 16 228 131722 212 chain 6463 chr8 146364022 + 125365784 125366006 L1MC4 1079 + 10 228 181525 39 36 34 13 84 82 50 chain 27445 chr8 146364022 + 125375815 125376106 AluYa5 310 + 19 310 94832 291 chain 37467 chr8 146364022 + 125392140 125392648 L1MA2 4263 - 150 652 72864 10 0 5 40 7 0 93 11 9 150 3 0 144 0 1 50 chain 181615 chr8 146364022 + 125394388 125396485 L1PA5 6144 - 9 2113 20832 104 6 15 652 4 1 1074 0 1 257 chain 20771 chr8 146364022 + 125409762 125410039 Tigger3b 1229 - 1 289 124714 82 3 4 139 0 10 53 chain 10144 chr8 146364022 + 125410957 125411543 L1PB3 3668 + 3352 3620 159876 33 8 7 62 12 11 13 354 33 17 3 1 29 1 13 10 1 0 10 11 8 15 1 0 6 chain 11259 chr8 146364022 + 125414048 125414190 LTR8 732 + 588 732 155196 27 1 3 114 chain 25799 chr8 146364022 + 125418423 125418727 AluSp 311 - 7 311 100872 304 chain 201512 chr8 146364022 + 125422931 125425532 L1PA5 6144 + 3881 6143 19106 161 1 0 856 338 0 1245 chain 22526 chr8 146364022 + 125433337 125433618 AluSc5 308 + 16 295 117905 48 2 0 231 chain 8724 chr8 146364022 + 125439550 125439908 MLT1C 463 - 45 404 167069 76 220 221 14 2 3 15 1 0 30 chain 136382 chr8 146364022 + 125443561 125445119 SVA_D 2077 - 7 2077 26769 516 0 20 128 1 490 88 40 0 322 0 39 434 1 7 13 2 0 13 chain 3697 chr8 146364022 + 125461417 125461458 MER51A 677 + 452 493 211983 41 chain 44490 chr8 146364022 + 125462262 125462815 MER41A 554 - 0 554 63591 370 7 8 176 chain 23712 chr8 146364022 + 125468520 125468803 AluSp 311 - 26 311 111968 157 1 0 30 1 4 94 chain 36158 chr8 146364022 + 125481459 125482080 L1PB1 5432 - 5 584 74699 5 2 0 18 1 0 7 7 6 21 1 0 24 2 0 15 1 0 4 2 0 18 17 7 6 1 0 10 10 9 41 2 5 10 2 1 51 2 0 11 5 1 11 1 0 8 1 0 21 3 0 12 1 2 138 1 0 102 11 0 15 chain 6978 chr8 146364022 + 125482314 125482427 MSTC 436 + 40 177 177617 69 4 20 20 7 15 13 chain 13762 chr8 146364022 + 125484681 125484877 MER107 203 + 0 203 145398 67 4 6 62 10 15 53 chain 22827 chr8 146364022 + 125514303 125514599 AluY 311 + 10 300 116458 121 21 15 154 chain 25288 chr8 146364022 + 125516988 125517295 AluSp 311 - 13 311 103281 173 9 0 125 chain 23930 chr8 146364022 + 125529398 125529689 AluSg 306 + 10 303 110752 263 0 2 28 chain 5280 chr8 146364022 + 125610571 125610632 MER20 218 - 63 124 192204 61 chain 7270 chr8 146364022 + 125614297 125614404 MER30 238 - 0 112 175651 81 12 17 14 chain 3958 chr8 146364022 + 125629036 125629080 tRNA-Met_ 45 - 1 45 208015 44 chain 4966 chr8 146364022 + 125671115 125671174 MLT1A0 366 + 253 312 195525 59 chain 3256 chr8 146364022 + 125687941 125688127 L1MB5 1630 - 190 389 219852 19 107 118 27 15 17 18 chain 20674 chr8 146364022 + 125755037 125755339 THE1B 368 - 62 368 125059 63 2 1 12 13 16 14 7 10 21 1 0 169 chain 16139 chr8 146364022 + 125760548 125760838 MSTA 426 - 43 366 137936 66 36 44 55 20 24 65 7 28 41 chain 36830 chr8 146364022 + 125775401 125775916 LTR10D 510 + 0 510 73763 58 10 7 13 2 0 23 1 0 39 0 1 128 1 2 84 1 0 25 0 1 105 4 3 21 chain 16354 chr8 146364022 + 125785076 125785258 L1PA5 6144 - 12 194 137322 182 chain 20178 chr8 146364022 + 125801251 125801581 THE1B 368 - 26 362 126599 23 8 9 4 1 0 53 35 39 14 7 10 21 1 0 163 chain 17425 chr8 146364022 + 125809808 125810052 L1PA16 3655 - 77 330 134448 81 16 24 61 3 4 83 chain 29360 chr8 146364022 + 125824407 125824952 L1PA15 4387 - 21 550 87242 10 1 0 30 4 0 11 3 1 22 0 3 19 6 3 50 15 10 22 1 0 55 1 0 26 2 1 70 62 63 35 19 19 28 2 0 51 chain 28292 chr8 146364022 + 125826701 125827009 AluYk4 311 + 0 308 91972 308 chain 21135 chr8 146364022 + 125832381 125832661 AluSp 311 - 7 300 123428 68 0 1 107 2 0 7 1 2 53 7 20 35 chain 49172 chr8 146364022 + 125857383 125857935 L1PA5 6144 - 0 552 59615 552 chain 6983 chr8 146364022 + 125862921 125863015 MSTD 398 - 50 145 177588 23 1 2 70 chain 83271 chr8 146364022 + 125887325 125888236 L1PA3long 6157 - 15 925 42219 572 1 0 338 chain 51501 chr8 146364022 + 125888236 125888832 L1P1 4361 + 3748 4341 57896 402 1 0 155 1 0 23 2 1 12 chain 6719 chr8 146364022 + 125889120 125889298 L1P4 1494 - 1276 1435 179543 59 49 40 28 3 0 3 2 0 8 14 9 12 chain 25156 chr8 146364022 + 125895697 125895990 AluSc 308 - 3 296 103977 293 chain 13924 chr8 146364022 + 125904717 125904968 MSTA 426 - 0 258 144841 108 10 18 21 42 41 70 chain 9839 chr8 146364022 + 125906953 125907068 MER52A 1651 - 0 115 161401 115 chain 28828 chr8 146364022 + 125909621 125910037 LTR7C 471 - 11 471 89770 21 0 2 239 13 9 23 0 3 57 15 35 27 0 23 21 chain 225075 chr8 146364022 + 125913406 125916145 HERV17-int 4347 - 655 4334 17589 58 2 1 5 0 1 107 0 4 13 1 4 172 1 2 212 3 4 117 0 929 364 1 0 231 4 0 120 0 1 133 0 1 276 0 4 20 0 3 281 0 1 260 0 1 154 0 1 73 1 0 27 2 0 33 5 4 48 1 0 14 chain 3592 chr8 146364022 + 125919740 125919879 HERVIP10F-int 4088 + 689 845 213808 17 78 96 5 1 0 38 chain 69146 chr8 146364022 + 125920270 125921026 L1PA2 6032 + 5275 6031 48740 756 chain 42079 chr8 146364022 + 125922024 125922568 HERVIP10FH-int 2884 + 159 1198 66521 53 0 1 108 1 495 382 chain 22088 chr8 146364022 + 125930809 125931104 AluSg7 307 - 1 297 119849 150 24 25 121 chain 65981 chr8 146364022 + 125945186 125946090 MER11B 1079 + 0 908 50109 220 0 5 26 0 1 6 4 1 55 0 4 225 53 52 82 7 11 7 1 0 38 0 1 38 6 0 136 chain 21964 chr8 146364022 + 125965249 125965531 AluSq2 311 + 10 289 120379 115 0 3 4 7 0 147 0 1 9 chain 77152 chr8 146364022 + 125977835 125978704 MER11D 897 + 2 897 44882 462 0 1 109 0 23 206 0 2 92 chain 4064 chr8 146364022 + 125979970 125980017 MLT1B 390 - 38 85 206421 47 chain 8275 chr8 146364022 + 126019820 126020006 Tigger4a 237 - 0 191 169543 69 1 9 43 44 48 12 7 0 10 chain 7002 chr8 146364022 + 126026122 126026236 L1MB7 1623 - 1398 1515 177449 78 15 15 14 0 3 7 chain 5173 chr8 146364022 + 126037583 126037649 L1PA8 5853 + 5690 5755 193315 52 1 0 13 chain 26074 chr8 146364022 + 126039488 126039995 L1PB1 5432 + 4943 5417 99731 160 1 2 9 3 0 24 26 20 11 3 1 5 0 3 8 3 0 34 19 17 43 1 0 16 4 1 15 8 0 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 26962 chr8 146364022 + 126052730 126053078 THE1C 375 + 0 350 96403 182 15 17 151 chain 10611 chr8 146364022 + 126081353 126081619 MSTD 398 + 99 398 157768 60 87 116 52 1 0 9 15 20 42 chain 11412 chr8 146364022 + 126101538 126101726 MER30 238 - 0 184 154633 99 1 0 9 4 23 45 22 0 8 chain 10626 chr8 146364022 + 126119319 126119889 Charlie1a 1436 - 866 1304 157706 72 343 216 25 59 54 71 chain 5797 chr8 146364022 + 126137546 126137706 LTR41B 718 - 557 718 187176 14 79 80 67 chain 22737 chr8 146364022 + 126139967 126140282 Tigger4b 360 - 0 355 116887 54 0 9 83 0 9 66 15 38 43 1 0 53 chain 41422 chr8 146364022 + 126158678 126159137 L1PA4 6152 + 5681 6140 67391 459 chain 517291 chr8 146364022 + 126208449 126214591 L1PA6 6164 - 2 6164 5450 152 18 17 71 4 5 85 1 2 394 0 1 113 0 4 584 3 10 355 0 4 732 0 1 332 1 0 85 0 6 19 0 1 11 4 7 372 0 4 405 0 2 58 1 3 684 0 1 175 0 4 23 0 1 957 0 1 4 1 0 59 4 0 7 29 9 13 0 3 386 chain 51964 chr8 146364022 + 126227285 126227856 L1PA3long 6157 - 0 571 57642 571 chain 22912 chr8 146364022 + 126228601 126228892 AluSp 311 + 2 298 116049 170 3 8 118 chain 23839 chr8 146364022 + 126246136 126246445 AluY 311 + 0 293 111257 118 17 0 14 0 1 160 chain 7051 chr8 146364022 + 126325263 126325342 L1PA8 5853 + 5770 5849 177094 79 chain 4938 chr8 146364022 + 126341976 126342052 MIR 256 + 100 175 195814 45 6 5 25 chain 28983 chr8 146364022 + 126345749 126346054 AluYa8 305 - 0 305 89080 305 chain 22014 chr8 146364022 + 126362737 126363075 THE1B 368 - 12 368 120164 36 6 14 106 4 0 32 1 0 73 36 51 44 chain 4472 chr8 146364022 + 126381375 126381427 THE1B 368 - 316 368 201098 52 chain 109173 chr8 146364022 + 126381432 126382886 THE1B-int 1605 - 7 1568 34399 335 22 38 102 11 27 68 0 2 226 8 45 9 0 2 68 10 9 210 0 25 38 1 6 47 5 7 218 0 3 76 chain 25647 chr8 146364022 + 126387996 126388293 AluSp 311 + 0 300 101509 91 0 3 206 chain 25156 chr8 146364022 + 126413279 126413624 L1PA8 5853 + 5515 5853 103979 49 1 0 44 2 0 74 28 26 32 2 1 19 1 0 93 chain 2951 chr8 146364022 + 126477461 126477513 L1MB5 1630 - 66 117 226059 15 10 9 27 chain 58318 chr8 146364022 + 126496028 126496678 L1PA3long 6157 - 0 651 53800 17 1 0 137 0 1 416 0 1 79 chain 55784 chr8 146364022 + 126504901 126505536 L1PA5 6144 - 0 634 55256 18 1 0 616 chain 25544 chr8 146364022 + 126545064 126545444 THE1B 368 + 0 368 102026 19 2 0 14 4 9 126 1 0 4 3 2 117 1 0 13 11 0 7 1 0 57 chain 3435 chr8 146364022 + 126545460 126545558 MLT1F2 592 - 447 550 216494 21 44 49 33 chain 29674 chr8 146364022 + 126549250 126549619 THE1B 368 - 0 368 85923 199 1 0 169 chain 11785 chr8 146364022 + 126549620 126549764 MER1A 529 - 135 279 153111 144 chain 16499 chr8 146364022 + 126551845 126552043 L1PA5 6144 - 0 195 136922 11 3 1 143 1 0 40 chain 563934 chr8 146364022 + 126595130 126601110 L1HS 6032 + 51 6032 242 23 0 1 5957 chain 5791 chr8 146364022 + 126612033 126612107 MIR 256 - 118 192 187245 74 chain 23174 chr8 146364022 + 126645099 126645443 THE1B 368 - 2 368 114791 73 1 0 5 7 15 95 7 6 59 6 7 51 0 15 40 chain 42793 chr8 146364022 + 126652181 126652716 MER41A 554 + 0 554 65669 390 0 17 38 2 3 12 0 1 93 chain 25325 chr8 146364022 + 126652831 126653142 AluSp 311 - 18 311 103093 11 18 0 282 chain 4729 chr8 146364022 + 126662678 126662736 MLT1F2 592 - 0 58 198176 58 chain 4075 chr8 146364022 + 126664592 126664635 MLT1E1A 663 + 427 470 206272 43 chain 27481 chr8 146364022 + 126681410 126681706 L1HS 6032 - 0 296 94710 296 chain 251348 chr8 146364022 + 126683070 126686536 L1PB1 5432 - 8 3386 16150 4 1 0 16 1 0 13 1 0 17 97 61 17 3 0 16 1 0 42 2 1 16 2 1 26 1 0 21 7 5 10 20 15 8 1 0 21 1 0 7 33 4 27 9 6 168 0 6 213 7 8 52 3 0 171 0 1 95 0 1 56 1 0 333 0 4 6 10 7 473 1 3 465 1 0 166 2 1 248 0 2 4 0 1 94 9 0 71 1 0 176 1 0 5 0 1 193 chain 9224 chr8 146364022 + 126695002 126695122 MLT1A 405 - 3 123 164433 120 chain 2825 chr8 146364022 + 126714687 126714723 MIRb 242 + 150 186 228295 36 chain 6336 chr8 146364022 + 126722026 126722106 MSTB1 431 + 351 431 182499 80 chain 21386 chr8 146364022 + 126723335 126723688 THE1B 368 + 0 368 122568 22 0 1 21 5 20 17 49 50 41 3 2 26 2 0 54 0 1 113 chain 120190 chr8 146364022 + 126723688 126725244 THE1B-int 1605 + 0 1594 30990 423 13 38 187 5 3 55 2 4 6 2 0 43 1 13 143 0 10 663 7 0 6 chain 25395 chr8 146364022 + 126725248 126725607 THE1B 368 + 0 368 102710 44 4 19 109 1 0 28 12 10 83 1 0 27 2 0 48 chain 345555 chr8 146364022 + 126750938 126754729 L1PA3long 6157 - 0 3803 11745 139 0 3 3318 0 9 334 chain 41217 chr8 146364022 + 126768211 126768757 MER41A 554 - 7 554 67626 165 5 4 183 10 11 41 1 0 49 0 1 84 0 1 8 chain 4107 chr8 146364022 + 126776937 126776995 L1MA4 2864 + 2753 2809 205811 13 2 0 43 chain 4257 chr8 146364022 + 126817274 126817322 MER50 708 - 660 708 203782 48 chain 34077 chr8 146364022 + 126824792 126825249 MLT2A1 477 + 0 472 77501 168 5 2 9 0 1 25 0 1 176 0 2 14 19 33 41 chain 14128 chr8 146364022 + 126831571 126831739 L1PA7 6471 - 309 477 144114 168 chain 20839 chr8 146364022 + 126831739 126832015 L1PA7 6471 + 6172 6467 124490 118 3 0 6 0 2 10 7 8 71 0 19 61 chain 24690 chr8 146364022 + 126839007 126839363 THE1B 368 - 0 368 106497 75 1 0 101 2 0 11 10 9 58 8 9 46 0 15 44 chain 14273 chr8 146364022 + 126854182 126854364 L1PREC2 3366 + 1852 2035 143641 147 0 1 35 chain 12007 chr8 146364022 + 126858876 126859108 Tigger3 1187 + 934 1166 152172 44 1 0 105 63 64 19 chain 20798 chr8 146364022 + 126862948 126863239 L1PA8 5853 + 5566 5853 124607 40 7 5 68 1 0 81 2 1 92 chain 19711 chr8 146364022 + 126871688 126871926 AluY 311 + 71 304 128062 52 2 0 10 3 0 171 chain 11236 chr8 146364022 + 126902645 126902817 L1PB4 2604 - 53 214 155277 117 24 13 31 chain 23650 chr8 146364022 + 126923100 126923379 AluSp 311 + 9 290 112308 55 0 1 189 0 1 35 chain 139906 chr8 146364022 + 126965922 126967821 L1PA8 5853 + 3954 5853 26154 58 49 51 381 0 3 205 0 2 8 0 1 6 1 0 56 1 2 279 4 7 44 0 1 92 48 45 222 1 0 147 1 0 44 2 0 71 1 0 5 12 4 7 0 7 5 1 0 33 2 1 19 1 0 93 chain 155703 chr8 146364022 + 126971145 126973327 L1PB1 5432 - 8 2151 23893 4 1 0 16 1 0 9 0 3 22 1 0 23 3 1 14 1 0 4 3 1 19 13 4 8 3 0 15 1 0 44 1 0 16 2 1 38 0 1 14 2 0 8 17 12 33 1 0 11 1 0 118 1 0 66 6 7 291 3 0 83 0 3 37 0 5 195 0 1 126 0 4 52 0 1 150 36 12 218 6 8 445 chain 44235 chr8 146364022 + 126998958 126999897 LTR71B 605 + 0 605 63906 98 19 0 30 4 0 3 0 11 7 2 3 401 329 6 46 chain 28957 chr8 146364022 + 127001576 127001877 AluYg6 310 + 0 301 89187 301 chain 39978 chr8 146364022 + 127006456 127007067 LTR71B 605 + 0 605 69348 68 13 14 41 4 3 9 6 0 10 1 2 5 7 0 219 19 23 149 14 15 17 0 1 29 chain 45685 chr8 146364022 + 127019965 127020478 MER9a1 513 + 0 513 62328 513 chain 382048 chr8 146364022 + 127021076 127025721 HERVK9-int 4720 + 6 4719 10696 17 27 13 14 7 4 4 1 0 69 1 0 5 1 0 30 1 0 180 1 0 4 0 1 658 3 2 743 45 9 502 0 1 503 1 2 168 0 3 754 0 14 89 9 8 175 0 12 352 0 96 281 chain 42549 chr8 146364022 + 127025722 127026226 MER9a1 513 + 0 513 65965 383 1 2 33 0 8 87 chain 147331 chr8 146364022 + 127037397 127039207 L1PA7 6471 - 3 1762 24990 842 1 4 522 56 1 134 0 1 255 chain 112052 chr8 146364022 + 127052007 127053474 THE1B-int 1605 + 0 1591 33649 12 13 15 161 9 5 239 7 32 135 0 100 633 0 1 258 chain 53386 chr8 146364022 + 127117328 127117958 L1PA7 6471 - 2 628 56771 181 4 0 445 chain 83082 chr8 146364022 + 127119884 127120944 L1PA8 5853 + 4759 5847 42297 247 1 3 63 0 1 10 1 3 166 0 4 108 0 25 62 0 1 112 2 1 43 2 0 71 1 0 9 1 0 56 2 1 13 4 3 86 chain 49813 chr8 146364022 + 127139085 127139652 L1PA7 6471 + 5902 6470 59148 366 0 1 201 chain 10646 chr8 146364022 + 127151880 127152005 MER85 139 + 4 139 157618 85 0 10 40 chain 34252 chr8 146364022 + 127154118 127154558 MER4A1 472 + 1 461 77277 224 0 21 114 7 6 95 chain 40973 chr8 146364022 + 127155232 127155823 LTR10A 586 - 22 586 67950 146 18 22 70 3 0 53 50 21 177 0 1 74 chain 64264 chr8 146364022 + 127158048 127159050 L1PA14 3548 - 63 1036 50893 20 1 0 7 8 6 38 1 0 16 2 1 10 1 0 9 4 2 33 5 1 10 1 0 111 1 0 84 12 9 10 17 13 100 2 0 4 2 0 48 2 0 11 12 9 243 2 1 56 0 3 90 6 5 23 chain 6671 chr8 146364022 + 127160326 127160496 L1PB1 5432 - 9 164 179895 5 1 0 14 1 0 12 1 0 22 1 0 24 25 20 18 19 15 4 1 0 8 1 0 13 chain 7416 chr8 146364022 + 127167741 127167853 L1PA16 3655 + 3423 3536 174678 80 12 13 20 chain 29541 chr8 146364022 + 127202491 127202801 AluYa5 310 - 0 310 86453 310 chain 172820 chr8 146364022 + 127205650 127207644 L1PA5 6144 + 4141 6128 21732 1153 1 0 133 4 1 533 3 0 167 chain 549979 chr8 146364022 + 127211663 127217999 L1PA3long 6157 + 1 6157 1449 139 12 26 880 0 1 953 0 1 1417 0 1 100 0 1 389 1 3 143 1 0 919 208 5 363 0 4 811 chain 29080 chr8 146364022 + 127248978 127249283 AluYa5 310 - 0 305 88642 305 chain 102668 chr8 146364022 + 127270965 127272166 L1PA6 6164 - 2 1201 36086 6 4 0 847 0 1 117 0 1 227 chain 24225 chr8 146364022 + 127304877 127305159 AluY 311 + 18 301 109059 114 0 1 168 chain 13140 chr8 146364022 + 127309698 127309892 MER30 238 - 30 238 147681 8 0 3 71 5 0 10 7 23 93 chain 10151 chr8 146364022 + 127311403 127311532 MER85 139 - 0 139 159843 40 0 10 89 chain 532684 chr8 146364022 + 127325486 127331285 L1PA2 6032 - 1 5984 3889 149 0 1 709 3 1 1367 0 1 551 5 191 499 1 0 371 1 0 2143 chain 29106 chr8 146364022 + 127333844 127334179 L1PA7 6471 - 1 338 88521 12 0 2 323 chain 15444 chr8 146364022 + 127337546 127337884 THE1D 372 + 27 372 140070 24 39 44 44 8 9 18 66 67 139 chain 94488 chr8 146364022 + 127350379 127352669 L1PB2 3958 + 34 1387 38211 18 19 14 18 5 0 15 14 9 32 2 0 32 14 0 9 1 0 46 5 2 31 0 1 185 924 6 20 14 10 18 0 1 249 0 1 165 0 1 171 7 15 145 0 1 15 0 1 32 0 1 35 0 5 49 chain 538022 chr8 146364022 + 127353830 127359838 L1PA3long 6157 + 1 6156 3147 151 14 15 603 0 108 8 0 20 1502 0 1 98 0 1 67 0 4 479 1 0 237 1 2 1063 0 4 275 0 6 737 1 3 771 chain 3325 chr8 146364022 + 127376846 127376886 Tigger4a 237 - 189 228 218488 19 1 0 20 chain 21798 chr8 146364022 + 127380230 127380593 THE1B 368 - 0 368 121029 56 35 37 16 9 0 16 25 35 7 0 3 29 1 0 169 chain 4999 chr8 146364022 + 127413768 127413898 MLT2C2 476 - 97 175 195150 25 5 0 42 47 0 11 chain 32045 chr8 146364022 + 127425933 127426388 LTR17 781 - 0 781 80789 59 5 27 174 0 80 66 36 26 22 1 0 46 0 235 46 chain 33511 chr8 146364022 + 127427385 127428163 HSMAR1 1287 - 65 552 78391 31 6 0 119 0 1 114 325 36 9 0 3 174 chain 7134 chr8 146364022 + 127431076 127431734 MLT1C 463 + 16 378 176520 15 27 35 53 11 5 26 421 122 23 2 0 5 49 52 26 chain 8696 chr8 146364022 + 127432188 127432300 LTR9B 643 - 84 199 167217 50 0 3 52 1 0 4 0 1 5 chain 435809 chr8 146364022 + 127470275 127475682 L1PA7 6471 + 32 6470 9172 58 0 1040 122 8 28 4 1 0 278 0 1 196 6 5 271 1 0 192 2 1 412 0 1 74 18 0 6 0 1 827 0 4 32 0 2 45 14 16 280 9 10 66 10 6 87 1 2 143 5 4 241 0 1 177 0 8 308 1 0 4 0 1 109 2 1 74 4 0 451 0 3 76 0 2 291 29 0 459 1 6 12 chain 7643 chr8 146364022 + 127477172 127477259 LTR24C 604 + 473 560 173268 87 chain 14041 chr8 146364022 + 127494578 127494734 L1PA4 6152 + 5995 6151 144417 156 chain 131461 chr8 146364022 + 127494895 127499564 L1PB1 5432 - 10 5055 27763 18 1 0 13 1 0 21 1 0 19 116 0 5 2 0 14 11 8 12 32 20 12 1 0 40 26 24 43 21 15 12 1 0 8 1 0 22 15 0 7 2367 2855 170 8 12 590 0 42 29 46 52 61 0 1 149 23 10 328 49 55 263 11 14 72 0 1 28 chain 3787 chr8 146364022 + 127495003 127495059 L1PB1 5432 - 5 57 210560 5 2 0 18 1 0 13 1 0 16 chain 7742 chr8 146364022 + 127496536 127496632 L1PB 1623 + 623 719 172646 96 chain 12087 chr8 146364022 + 127500269 127500416 L1PBa 3878 - 3282 3428 151846 72 1 0 74 chain 4372 chr8 146364022 + 127506359 127506410 THE1D 372 - 321 372 202293 51 chain 9065 chr8 146364022 + 127517007 127517114 U6 107 + 0 107 165234 107 chain 16837 chr8 146364022 + 127536010 127536324 L1PB1 5432 + 5137 5420 136023 9 1 0 12 4 0 9 2 0 53 2 1 15 1 0 44 1 0 9 21 8 30 24 19 24 1 0 21 1 0 13 1 0 16 chain 32782 chr8 146364022 + 127579456 127580550 LTR43 600 + 0 576 79559 21 12 23 56 60 59 56 0 3 6 2 0 114 11 15 91 2 0 18 537 0 29 0 6 79 chain 59561 chr8 146364022 + 127593203 127593937 LTR17 781 + 0 768 53075 32 0 12 283 1 0 379 6 29 33 chain 3023 chr8 146364022 + 127595373 127595411 L1MC2 1988 - 395 433 224576 38 chain 7595 chr8 146364022 + 127622276 127622370 MER58A 224 - 0 94 173583 94 chain 51507 chr8 146364022 + 127644687 127645360 L1PA8 5853 - 0 666 57962 93 1 0 15 2 1 51 25 22 63 2 0 44 1 0 45 1 0 67 0 1 259 0 1 4 chain 10574 chr8 146364022 + 127651496 127651635 MER85 139 + 1 139 157938 95 10 9 34 chain 4092 chr8 146364022 + 127679355 127679406 MSTB 430 - 379 430 206047 51 chain 3999 chr8 146364022 + 127684256 127684300 LTR48 738 - 52 96 207396 44 chain 126217 chr8 146364022 + 127688651 127690215 THE1A-int 1579 + 0 1574 29027 15 0 2 170 4 0 396 0 1 799 1 12 179 chain 13046 chr8 146364022 + 127691779 127692006 MER30 238 + 0 235 148051 115 4 15 44 30 0 10 1 28 23 chain 20596 chr8 146364022 + 127695320 127695601 AluSc 308 + 9 293 125310 44 2 1 81 6 10 148 chain 18799 chr8 146364022 + 127711547 127711789 THE1A-int 1579 + 591 831 130681 73 8 7 49 1 0 111 chain 59050 chr8 146364022 + 127711789 127712528 THE1A-int 1579 + 837 1570 53366 640 11 5 88 chain 162543 chr8 146364022 + 127721419 127723361 L1PA7 6471 + 4504 6469 22993 120 0 1 416 0 8 149 0 1 298 0 1 88 3 9 31 0 4 167 1 2 85 0 1 584 chain 125467 chr8 146364022 + 127725855 127727444 LTR12C 1709 - 0 1709 29254 84 5 4 212 0 4 122 0 1 54 17 10 100 4 2 6 1 0 36 6 8 48 0 2 140 6 126 285 0 1 267 1 2 195 chain 12730 chr8 146364022 + 127739378 127739603 L1PA16 3655 - 36 234 149333 16 5 0 7 20 0 18 3 0 25 12 13 119 chain 28030 chr8 146364022 + 127742503 127742812 AluYa5 310 + 0 307 92891 97 3 0 34 0 1 175 chain 34049 chr8 146364022 + 127743908 127744316 L1PA5 6144 - 16 426 77549 138 7 8 170 0 1 93 chain 4688 chr8 146364022 + 127759809 127759903 MADE1 96 - 0 96 198657 15 23 0 9 1 26 46 chain 20804 chr8 146364022 + 127763658 127764019 THE1B 368 + 0 356 124585 14 2 0 33 0 1 59 29 31 39 39 32 71 0 2 11 1 0 63 chain 35571 chr8 146364022 + 127789350 127789735 L1PA2 6032 - 376 761 75447 385 chain 32610 chr8 146364022 + 127789735 127790084 L1PA2 6032 + 5682 6032 79835 197 0 1 152 chain 45635 chr8 146364022 + 127791197 127791760 LTR19B 566 + 0 566 62367 171 1 2 120 4 5 215 0 1 52 chain 25504 chr8 146364022 + 127795623 127795896 L1PA2 6032 - 1 274 102203 273 chain 23600 chr8 146364022 + 127795896 127796148 L1PA2 6032 + 5490 5742 112589 252 chain 23107 chr8 146364022 + 127805340 127805597 L1PA2 6032 - 0 260 115107 107 0 3 150 chain 8243 chr8 146364022 + 127808968 127809090 MLT2B3 573 - 450 573 169722 54 9 10 59 chain 555200 chr8 146364022 + 127811862 127817891 L1PA2 6032 - 2 6032 804 975 0 1 517 1 0 3010 0 1 1526 chain 88273 chr8 146364022 + 127848377 127849419 L1PA7 6471 - 4 1043 40272 6 3 0 136 0 1 703 1 0 193 chain 5525 chr8 146364022 + 127879158 127879238 MADE1 96 - 0 96 189791 34 1 17 45 chain 60824 chr8 146364022 + 127900821 127901482 L1PA2 6032 - 3 664 52419 661 chain 120292 chr8 146364022 + 127905234 127906710 L1PA7 6471 - 18 1921 30943 54 0 1 269 5 415 11 1 0 82 1 0 150 0 1 26 0 1 40 0 12 443 1 0 112 1 0 158 0 4 65 0 2 29 1 0 4 0 1 23 chain 42290 chr8 146364022 + 127913610 127914141 L1PA7 6471 + 5943 6470 66283 39 4 2 473 1 0 9 1 0 4 chain 18748 chr8 146364022 + 127967582 127967816 L1PA6 6164 + 5899 6134 130829 93 1 0 4 0 1 13 0 1 123 chain 7375 chr8 146364022 + 127968085 127968176 MER30 238 + 2 93 174939 91 chain 507713 chr8 146364022 + 127992754 127998276 L1PA2 6032 - 9 5603 6348 11 1 0 1221 0 3 1749 0 66 522 0 4 2018 chain 21914 chr8 146364022 + 128009484 128010160 L1PB1 5432 - 5 493 120568 5 2 0 18 1 0 13 2 1 20 1 0 23 28 21 18 30 17 10 1 0 39 6 5 16 2 1 50 40 32 20 187 35 80 1 0 6 3 4 54 chain 59235 chr8 146364022 + 128037069 128037726 L1PA3long 6157 + 5500 6157 53257 657 chain 13101 chr8 146364022 + 128045636 128045782 L1PA5 6144 + 5998 6144 147841 146 chain 260367 chr8 146364022 + 128056251 128060484 L1PA7 6471 + 3330 6469 15680 152 17 17 96 0 1 2006 0 1 21 6 5 16 1101 1 360 4 5 440 0 4 14 chain 73696 chr8 146364022 + 128058581 128059659 MER11A 1151 + 16 1151 46679 39 0 99 22 8 0 54 1 0 64 4 0 127 24 25 92 0 1 138 0 1 132 0 26 26 43 0 19 18 0 36 6 7 59 0 1 48 4 3 22 0 2 92 chain 45813 chr8 146364022 + 128102036 128102613 L1PA7 6471 - 12 591 62214 131 19 20 176 0 1 251 chain 49265 chr8 146364022 + 128103279 128103868 LTR10C 591 + 0 591 59541 503 5 7 81 chain 50638 chr8 146364022 + 128107651 128108214 L1PA4 6152 - 0 568 58547 6 0 5 557 chain 23444 chr8 146364022 + 128117471 128117762 AluSg7 307 + 0 300 113407 32 0 8 91 0 1 168 chain 172374 chr8 146364022 + 128120005 128121898 L1PA3long 6157 - 0 1894 21774 5 3 0 1794 0 4 91 chain 33448 chr8 146364022 + 128121901 128122270 L1PA3long 6157 + 3884 4254 78492 44 0 1 325 chain 26119 chr8 146364022 + 128143583 128143890 L1PA7 6471 - 701 1006 99531 149 2 0 156 chain 51820 chr8 146364022 + 128143898 128144515 L1PA7 6471 + 5794 6411 57737 617 chain 4276 chr8 146364022 + 128144515 128144564 L1PA7 6471 + 6415 6464 203520 49 chain 17051 chr8 146364022 + 128169560 128169918 L1PB1 5432 + 5107 5430 135455 7 3 0 24 1 0 8 1 0 12 17 11 47 10 9 11 1 0 43 2 1 10 9 6 12 9 0 18 3 1 5 1 0 14 2 0 46 1 0 12 1 0 10 1 0 12 1 0 4 chain 122104 chr8 146364022 + 128195043 128196632 L1PA8 5853 + 4269 5853 30346 65 1 0 182 0 5 336 0 1 125 2 1 22 1 0 3 2 0 85 0 1 367 19 23 5 0 2 72 1 0 44 4 2 66 4 3 10 1 0 11 17 0 44 1 0 16 1 0 37 0 10 10 2 3 33 chain 2951 chr8 146364022 + 128199018 128199061 MLT1F2 592 + 506 543 226065 26 6 0 11 chain 22958 chr8 146364022 + 128200944 128201236 AluY 311 + 16 299 115812 107 1 0 164 5 0 7 3 0 5 chain 218452 chr8 146364022 + 128204488 128206885 L1PA3long 6157 - 0 2401 17972 258 0 1 1591 2 1 78 0 4 468 chain 3909 chr8 146364022 + 128247892 128247972 LTR16A 446 + 264 345 208725 14 23 24 43 chain 64821 chr8 146364022 + 128247990 128248733 L1PA5 6144 - 0 747 50650 147 0 1 274 0 1 193 0 1 125 0 1 4 chain 6472 chr8 146364022 + 128250769 128250868 L1MB1 2102 - 95 193 181454 63 11 10 25 chain 43716 chr8 146364022 + 128256642 128257261 LTR66 600 + 0 600 64551 180 1 0 34 1 8 176 66 42 32 2 1 127 chain 24848 chr8 146364022 + 128265229 128265495 L1PA3long 6157 - 0 266 105636 266 chain 19407 chr8 146364022 + 128308076 128308320 AluSz6 309 + 8 257 128926 188 1 6 55 chain 348024 chr8 146364022 + 128323820 128327676 L1HS 6032 + 1 3853 11663 477 4 0 3375 chain 124659 chr8 146364022 + 128328169 128330149 SVA_F 1814 + 335 1814 29487 468 0 40 12 196 0 31 224 0 43 18 33 39 2 0 120 2 0 17 1 0 39 2 0 4 1 0 52 124 0 570 4 0 11 chain 20101 chr8 146364022 + 128328876 128329090 SVA_F 1814 + 1000 1214 112202 214 chain 4936 chr8 146364022 + 128329440 128329525 SVA_F 1814 + 1057 1143 124841 37 0 1 48 chain 3281 chr8 146364022 + 128329525 128329564 SVA_F 1814 + 1017 1057 149777 7 0 1 32 chain 201509 chr8 146364022 + 128330925 128333117 L1PA2 6032 + 3837 6032 19107 535 0 1 885 0 2 772 chain 3943 chr8 146364022 + 128362901 128362966 Arthur1B 1073 + 760 826 208231 28 12 13 25 chain 20606 chr8 146364022 + 128372434 128372805 MSTA 426 - 0 382 125269 108 2 16 66 2 0 30 2 0 11 56 61 49 14 10 31 chain 68550 chr8 146364022 + 128385331 128386126 L1PA7 6471 - 5 799 49012 318 1 0 476 chain 212606 chr8 146364022 + 128392079 128394367 L1PA2 6032 + 3744 6032 18319 2288 chain 24259 chr8 146364022 + 128397613 128397889 AluY 311 + 1 280 108893 30 0 1 100 0 2 146 chain 20990 chr8 146364022 + 128401979 128402218 L1PA5 6144 - 1 241 123956 211 0 1 28 chain 30126 chr8 146364022 + 128443947 128444392 LTR7 482 + 0 482 84394 48 4 10 28 50 0 15 29 79 50 0 31 221 chain 288575 chr8 146364022 + 128444394 128448003 HERVH-int 3825 + 0 3825 14117 240 0 5 169 2 0 87 0 21 8 65 0 15 30 59 14 1 0 13 3 0 25 1 0 27 2 0 15 2 1 12 31 19 49 1 0 906 4 31 714 0 1 67 0 11 236 0 1 4 2 1 367 43 253 454 chain 38509 chr8 146364022 + 128449259 128449697 LTR7 482 + 0 470 71424 246 1 32 51 0 1 140 chain 4166 chr8 146364022 + 128459997 128460049 MER20 218 + 159 211 205018 52 chain 16321 chr8 146364022 + 128463745 128464109 THE1B 368 + 3 368 137434 97 37 38 22 77 83 30 3 0 33 2 0 5 2 1 56 chain 48473 chr8 146364022 + 128488067 128488618 L1PA4 6152 - 6 558 60133 148 0 2 104 1 0 298 chain 18349 chr8 146364022 + 128496669 128497001 MER61A 341 - 7 341 131938 84 93 95 155 chain 28484 chr8 146364022 + 128499644 128499959 AluYf4 310 - 1 310 91246 177 6 0 132 chain 50219 chr8 146364022 + 128515177 128515774 L1PA7 6471 + 5862 6461 58853 406 0 1 38 1 2 152 chain 20062 chr8 146364022 + 128523357 128523590 L1PA5 6144 - 9 243 126936 138 0 1 95 chain 13333 chr8 146364022 + 128532233 128532411 THE1D 372 - 0 178 146965 32 1 0 102 0 2 4 1 0 38 chain 93476 chr8 146364022 + 128553223 128554273 L1PA4 6152 - 9 1061 38514 104 0 1 175 0 1 771 chain 28109 chr8 146364022 + 128567685 128568029 L1PA5 6144 + 5773 6121 92609 219 9 13 116 chain 32854 chr8 146364022 + 128570026 128570457 MLT2A1 477 + 0 469 79449 137 4 5 23 4 8 151 1 0 79 1 35 31 chain 47931 chr8 146364022 + 128574935 128575488 L1PA5 6144 - 0 550 60536 5 3 0 146 1 0 190 0 1 208 chain 88563 chr8 146364022 + 128610006 128611114 L1PA6 6164 + 5050 6161 40163 140 1 2 123 7 9 444 37 0 63 0 1 38 0 8 98 0 31 147 3 0 7 chain 66793 chr8 146364022 + 128642363 128643075 SVA_E 1901 + 1040 1879 49735 55 0 127 657 chain 26983 chr8 146364022 + 128650156 128650461 AluYk4 311 + 0 303 96338 132 3 0 76 0 1 94 chain 32509 chr8 146364022 + 128665599 128666032 MLT2A1 477 + 4 477 80007 139 0 4 22 4 1 11 1 2 21 0 1 180 3 0 5 10 50 37 chain 18554 chr8 146364022 + 128670470 128670759 L1PB2 3958 - 120 404 131349 60 10 9 16 2 0 74 1 0 61 18 14 5 0 3 42 chain 11359 chr8 146364022 + 128670848 128671044 L1PB 1623 + 1250 1446 154862 28 21 18 4 1 0 89 4 8 49 chain 3133 chr8 146364022 + 128675036 128675167 MIR 256 + 103 229 222299 30 14 14 16 55 50 16 chain 3590 chr8 146364022 + 128685152 128685231 MADE1 96 - 0 96 213821 24 25 42 30 chain 8004 chr8 146364022 + 128710434 128710607 MER5A 189 + 5 188 171027 67 26 12 35 8 29 10 9 10 13 0 2 5 chain 2978 chr8 146364022 + 128724446 128724729 MLT1H 522 - 122 405 225483 22 232 232 29 chain 12653 chr8 146364022 + 128740764 128740918 L1PA7 6471 - 2 156 149632 154 chain 237884 chr8 146364022 + 128781416 128784162 L1PA5 6144 - 12 2785 16888 314 7 8 32 0 2 338 1 11 140 1 0 158 0 1 708 0 7 480 0 3 5 3 0 8 8 9 235 0 2 50 0 4 258 chain 39042 chr8 146364022 + 128785647 128786158 L1PA8 5853 + 5346 5853 70674 31 0 2 185 1 0 46 2 0 55 15 14 61 2 1 19 1 0 93 chain 2743 chr8 146364022 + 128840285 128840318 Charlie26a 274 - 64 98 229576 25 0 1 8 chain 29623 chr8 146364022 + 128842894 128843274 MLT2A1 477 + 0 384 86141 142 0 1 25 1 5 151 2 1 59 chain 113334 chr8 146364022 + 128846405 128847858 L1PA8 5853 + 4433 5853 33270 181 0 1 372 0 4 6 30 12 86 14 0 31 0 1 435 1 0 32 0 1 5 1 0 8 2 0 70 2 1 8 2 1 52 2 1 19 1 0 93 chain 8092 chr8 146364022 + 128884680 128884838 L1MA3 4352 + 4204 4352 170533 32 4 0 21 3 1 24 9 7 28 1 0 11 2 1 23 chain 13192 chr8 146364022 + 128895720 128895869 L1PA4 6152 + 5994 6143 147497 149 chain 24702 chr8 146364022 + 128927584 128927881 AluSp 311 + 11 305 106421 48 3 0 246 chain 24149 chr8 146364022 + 128941762 128942028 AluY 311 + 32 297 109474 101 1 0 164 chain 6974 chr8 146364022 + 128960866 128961030 MLT1B 390 + 140 299 177657 9 5 0 4 4 0 10 3 0 8 22 28 69 10 11 20 chain 5534 chr8 146364022 + 128976785 128976849 MLT1C 463 - 48 112 189722 64 chain 12833 chr8 146364022 + 129011376 129011523 U1 164 + 0 147 148913 147 chain 9094 chr8 146364022 + 129017506 129017616 MER30 238 + 133 238 165099 5 2 0 61 3 0 39 chain 5550 chr8 146364022 + 129022788 129022857 U4 144 - 75 144 189562 69 chain 6992 chr8 146364022 + 129032490 129033014 MLT1E2 623 + 65 600 177529 8 5 0 40 13 6 17 351 372 19 0 1 10 21 22 40 chain 6370 chr8 146364022 + 129107781 129107855 MER58A 224 + 44 118 182248 74 chain 3884 chr8 146364022 + 129109754 129109803 MER58C 217 + 160 209 209117 49 chain 134440 chr8 146364022 + 129130068 129131632 SVA_D 2077 - 6 1674 27122 629 0 49 4 0 1 158 2 0 178 1 0 6 35 10 6 1 0 44 0 83 142 3 0 34 6 9 315 chain 1990 chr8 146364022 + 129131046 129131081 SVA_D 2077 - 905 940 74080 35 chain 4755 chr8 146364022 + 129131721 129131778 LTR12_ 688 + 0 57 197857 57 chain 3326 chr8 146364022 + 129277475 129277512 MER58A 224 - 140 177 218472 37 chain 306541 chr8 146364022 + 129290903 129295351 L1PB1 5432 + 977 5422 13151 48 0 5 164 0 1 108 0 3 22 26 25 52 12 15 245 0 1 130 4 5 446 2 0 150 0 3 111 54 103 146 0 1 77 1 0 167 0 1 519 25 26 20 26 26 130 2 5 146 6 5 41 9 4 68 5 14 249 0 2 3 2 0 33 9 8 70 6 7 71 0 3 170 3 0 216 0 1 125 2 0 111 0 3 21 79 19 19 0 3 14 5 1 9 2 0 33 1 2 17 2 1 15 1 0 45 1 0 15 3 0 29 2 0 7 17 14 24 1 0 14 8 7 13 1 0 18 chain 12753 chr8 146364022 + 129299789 129299931 L1PA4 6152 + 6009 6151 149241 142 chain 541094 chr8 146364022 + 129355889 129361918 L1PA3long 6157 + 0 6157 2653 153 0 1 617 9 133 1185 0 1 2605 1 2 313 0 1 1146 chain 26969 chr8 146364022 + 129363115 129363410 L1PA2 6032 - 3 298 96371 295 chain 11090 chr8 146364022 + 129369054 129369181 L1PA8 5853 - 448 575 155843 127 chain 28690 chr8 146364022 + 129369181 129369569 L1PA8 5853 + 5462 5853 90365 59 0 3 40 1 0 45 2 0 70 1 0 18 0 6 37 2 1 19 2 1 92 chain 3841 chr8 146364022 + 129380223 129380311 MER34C_ 573 - 0 92 209775 25 33 37 30 chain 9499 chr8 146364022 + 129387280 129387463 LTR12F 595 + 0 284 163083 25 0 1 41 5 148 25 43 0 44 chain 83815 chr8 146364022 + 129387473 129388579 HERV9-int 5642 + 4528 5623 41981 702 1 0 56 0 1 120 0 12 38 5 3 33 21 19 13 1 0 27 11 15 17 1 0 14 31 10 15 chain 2797 chr8 146364022 + 129394756 129394849 LTR12F 595 + 235 284 228786 11 2 1 19 43 0 18 chain 14815 chr8 146364022 + 129457200 129457388 AluSq10 312 - 16 206 141897 139 4 5 40 0 1 5 chain 567935 chr8 146364022 + 129465235 129471266 L1HS 6032 - 0 6032 30 5959 0 1 72 chain 3898 chr8 146364022 + 129537921 129537968 MER58A 224 - 16 63 208889 47 chain 28489 chr8 146364022 + 129571389 129571686 AluYa5 310 - 13 310 91229 297 chain 17898 chr8 146364022 + 129598960 129599273 THE1C 375 + 0 315 133106 142 10 14 22 54 53 9 1 0 75 chain 38272 chr8 146364022 + 129624146 129624597 LTR7 482 - 0 482 71746 115 0 1 4 1 0 67 0 31 38 0 1 4 1 0 221 chain 295387 chr8 146364022 + 129625853 129629423 HERVH-int 3825 - 0 3825 13680 376 1 4 6 3 0 101 8 218 1099 0 10 295 6 33 847 0 3 51 0 3 14 0 2 6 0 1 61 1 0 16 11 49 12 1 0 14 29 0 24 2 1 9 1 0 38 5 0 342 1 0 190 chain 39516 chr8 146364022 + 129629425 129629876 LTR7 482 - 0 482 70002 187 0 31 264 chain 58806 chr8 146364022 + 129642622 129643314 L1PA5 6144 + 5167 5838 53521 502 0 2 72 23 0 95 chain 3705 chr8 146364022 + 129647820 129647881 L1M2 1805 - 291 343 211876 8 9 0 44 chain 4645 chr8 146364022 + 129672776 129672851 L1MC4 1079 - 450 524 199118 36 7 8 25 2 0 5 chain 19257 chr8 146364022 + 129673304 129673525 L1PA7 6471 + 6248 6466 129357 209 3 0 9 chain 32384 chr8 146364022 + 129713850 129714329 MLT2A1 477 - 0 470 80215 42 60 50 242 0 1 135 chain 33967 chr8 146364022 + 129719274 129719653 L1PA3long 6157 - 0 379 77668 379 chain 459902 chr8 146364022 + 129719687 129724828 L1PA2 6032 - 0 6032 8401 1281 0 366 147 0 4 272 0 1 894 0 4 29 24 24 1658 8 0 730 0 524 98 chain 545987 chr8 146364022 + 129726597 129732634 L1PA2 6032 + 0 6031 1946 622 15 0 74 0 7 215 1 0 876 0 5 392 1 0 793 0 1 1013 0 2 1026 4 0 1005 chain 538115 chr8 146364022 + 129756851 129762878 L1PA3long 6157 + 0 6157 3130 152 0 1 109 9 0 105 0 1 400 8 136 29 1 5 311 1 0 1326 2 0 689 0 4 1224 0 2 149 0 1 484 0 1 1028 chain 522345 chr8 146364022 + 129772103 129778236 L1PA5 6144 + 3 6144 4925 557 10 9 131 7 0 535 1 2 141 19 16 1801 2 1 414 0 1 607 5 6 123 0 4 705 0 9 284 0 1 779 1 4 11 chain 6941 chr8 146364022 + 129778296 129778426 L1MA3 4352 + 3901 4035 177880 5 1 0 33 28 33 63 chain 12096 chr8 146364022 + 129782480 129782680 L1PB1 5432 - 2430 2628 151808 86 18 19 54 2 1 7 0 1 6 4 0 9 0 1 14 chain 7858 chr8 146364022 + 129784812 129784955 L1PB1 5432 + 5114 5247 171949 24 1 0 5 2 1 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 11 chain 4401 chr8 146364022 + 129804294 129804395 MER58A 224 + 115 221 201923 4 1 0 16 32 38 48 chain 41788 chr8 146364022 + 129804428 129804973 MLT2A2 560 - 0 555 66917 76 0 1 70 10 21 318 1 0 13 1 0 56 chain 18773 chr8 146364022 + 129808651 129808903 Tigger3a 397 - 14 336 130763 211 0 10 23 4 64 14 chain 542737 chr8 146364022 + 129813478 129819620 L1PA4 6152 + 0 6152 2384 950 0 4 153 0 3 1203 1 0 707 0 1 162 1 0 2855 0 1 97 0 3 13 chain 5861 chr8 146364022 + 129832041 129832121 MADE1 96 + 0 96 186578 32 1 17 47 chain 132520 chr8 146364022 + 129837225 129839366 SVA_F 1814 - 2 1479 27520 599 51 0 208 1 0 42 0 15 56 1 0 37 1 0 27 628 3 490 chain 4248 chr8 146364022 + 129837824 129837875 SVA_F 1814 - 777 826 104452 26 1 0 17 1 0 6 chain 15166 chr8 146364022 + 129838248 129838799 SVA_F 1814 - 746 809 120590 40 492 4 19 chain 2259 chr8 146364022 + 129838327 129838352 SVA_F 1814 - 827 852 235885 25 chain 20806 chr8 146364022 + 129838388 129838671 SVA_F 1814 - 540 777 124580 183 48 0 21 0 1 13 0 1 18 chain 2133 chr8 146364022 + 129838574 129838597 SVA_F 1814 - 627 650 237352 23 chain 5970 chr8 146364022 + 129838672 129838740 SVA_F 1814 - 780 848 185511 68 chain 4307 chr8 146364022 + 129838799 129838847 SVA_F 1814 - 872 921 197844 5 0 1 43 chain 27546 chr8 146364022 + 129853797 129854105 L1PA4 6152 + 5843 6151 94515 308 chain 33573 chr8 146364022 + 129880360 129880774 L1PA7 6471 - 18 437 78279 144 1 2 107 0 4 162 chain 12489 chr8 146364022 + 129887842 129888045 MSTA 426 + 3 426 150294 20 3 4 71 28 247 81 chain 551641 chr8 146364022 + 129903734 129909767 L1PA2 6032 - 1 6031 1233 2891 0 4 247 0 1 165 7 8 1363 8 0 799 1 0 552 chain 5632 chr8 146364022 + 129916999 129917154 Tigger2b_Pri 1066 - 83 238 188752 23 32 0 7 31 63 62 chain 29649 chr8 146364022 + 129926704 129927114 LTR7 482 + 0 482 86066 68 9 47 110 7 8 16 1 0 15 0 31 10 0 3 174 chain 312525 chr8 146364022 + 129927116 129930899 HERVH-int 3825 + 0 3825 12910 279 0 2 52 2 1 199 1 0 8 1 0 5 28 58 12 1 0 15 21 18 48 1 0 82 1 0 419 1 2 800 0 4 181 0 1 24 0 2 1065 0 4 274 0 7 263 chain 5309 chr8 146364022 + 129937806 129937910 L1MC2 1988 + 1775 1876 191920 40 9 10 22 11 7 22 chain 23941 chr8 146364022 + 129939991 129940283 AluYk4 311 - 11 303 110682 292 chain 115543 chr8 146364022 + 129966335 129967686 L1PA6 6164 - 8 1359 32596 152 11 12 503 0 1 177 2 0 506 chain 38689 chr8 146364022 + 129989402 129989867 L1PA7 6471 + 5992 6464 71164 397 0 7 68 chain 88457 chr8 146364022 + 130006778 130008225 L1PA7 6471 + 4071 6465 40204 60 0 6 277 0 15 132 338 0 103 0 3 335 3 1266 13 8 0 15 10 18 145 2 0 6 chain 15836 chr8 146364022 + 130011007 130011424 MER44D 709 - 19 506 138838 40 120 33 12 4 10 115 7 5 47 50 203 22 chain 11117 chr8 146364022 + 130144708 130144860 THE1D-int 1627 - 8 160 155749 26 0 3 13 1 0 26 1 0 38 1 0 46 chain 24113 chr8 146364022 + 130150059 130150447 THE1D 372 + 0 372 109682 41 0 1 4 1 0 29 19 0 20 9 10 61 23 26 144 2 1 35 chain 557791 chr8 146364022 + 130164370 130170396 L1PA2 6032 - 2 6030 526 3962 0 1 147 0 1 1917 chain 47317 chr8 146364022 + 130195952 130196480 L1PA4 6152 + 5615 6143 60958 528 chain 27468 chr8 146364022 + 130208449 130208783 L1PA7 6471 - 163 511 94747 66 0 5 10 0 9 258 chain 6653 chr8 146364022 + 130208783 130208866 L1PA7 6471 + 6387 6469 180062 71 1 0 11 chain 8410 chr8 146364022 + 130235812 130235929 MER47B 469 - 344 463 168792 54 2 4 61 chain 20108 chr8 146364022 + 130248597 130248919 THE1C 375 + 1 328 126799 172 30 33 67 23 25 30 chain 3020 chr8 146364022 + 130254160 130254192 MER5A 189 + 41 73 224616 32 chain 22632 chr8 146364022 + 130257374 130257648 AluY 311 + 5 295 117414 124 1 0 83 0 17 66 chain 23173 chr8 146364022 + 130273544 130273907 THE1B 368 + 0 368 114798 12 3 1 12 1 0 12 0 5 27 8 5 98 2 0 20 2 0 52 7 0 84 3 20 20 chain 33035 chr8 146364022 + 130278891 130279258 L1PA3long 6157 + 5785 6152 79164 367 chain 5997 chr8 146364022 + 130288121 130288194 L1MB5 1630 + 1392 1465 185265 73 chain 26678 chr8 146364022 + 130299751 130300647 L1PB3 3668 + 3174 3595 97396 33 0 1 56 18 9 17 1 0 101 1 0 39 439 0 45 23 7 18 2 0 3 1 0 25 3 1 37 7 3 12 2 1 13 chain 4978 chr8 146364022 + 130300021 130300081 MER51B 395 + 0 61 195391 23 0 1 37 chain 6619 chr8 146364022 + 130325580 130325728 MER20 218 + 50 196 180311 18 18 17 4 1 0 51 16 19 5 3 0 32 chain 493875 chr8 146364022 + 130336551 130342044 L1PA3long 6157 + 6 6156 7181 88 0 526 158 1 129 1411 5 1 72 0 3 477 0 1 3040 0 3 241 chain 13748 chr8 146364022 + 130343823 130343987 L1PA7 6471 + 6297 6461 145446 164 chain 30194 chr8 146364022 + 130394195 130394509 AluYb8 318 + 0 314 84208 314 chain 134371 chr8 146364022 + 130412144 130413956 L1PA11 4918 + 2801 4578 27138 40 10 9 347 1 2 245 2 0 222 1 0 570 3 0 95 2 0 62 2 1 13 2 0 67 2 0 14 1 0 20 9 0 9 8 3 10 29 24 13 2 0 11 chain 22044 chr8 146364022 + 130415084 130415361 AluSp 311 + 0 275 120049 47 11 10 75 1 0 143 chain 29301 chr8 146364022 + 130442265 130442662 L1PB1 5432 - 4235 4635 87562 301 4 5 29 7 9 56 chain 20478 chr8 146364022 + 130465405 130465664 AluSg7 307 - 49 307 125690 48 7 6 204 chain 5567 chr8 146364022 + 130468795 130468862 MLT2D 439 + 55 122 189409 67 chain 56735 chr8 146364022 + 130504436 130505159 L1PA8 5853 + 5134 5853 54698 71 0 3 356 1 0 46 2 0 69 1 0 9 1 0 52 6 5 15 1 0 93 chain 22404 chr8 146364022 + 130519169 130519437 AluSp 311 - 18 287 118466 235 0 1 33 chain 4065 chr8 146364022 + 130531311 130531358 L1MA2 4263 + 1347 1394 206395 47 chain 16221 chr8 146364022 + 130544965 130545142 L1PA3long 6157 + 5980 6157 137691 177 chain 34865 chr8 146364022 + 130565427 130566029 L1PB1 5432 + 4871 5422 76389 29 0 1 145 0 1 5 1 0 51 29 11 24 27 21 10 2 0 51 2 1 16 1 0 43 1 0 16 3 0 8 12 4 19 6 0 5 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 chain 24205 chr8 146364022 + 130574908 130575172 L1PA3long 6157 + 5885 6149 109184 264 chain 151025 chr8 146364022 + 130590637 130592450 L1PA7 6471 + 4659 6469 24474 9 0 4 313 2 1 235 0 1 392 4 0 230 0 1 452 3 1 9 1 6 8 5 0 138 2 0 10 chain 28400 chr8 146364022 + 130611814 130612156 L1PA6 6164 - 2 344 91579 141 1 0 17 1 2 182 chain 11098 chr8 146364022 + 130612759 130612924 L1PA10 4194 - 33 202 155817 11 4 3 31 3 0 8 0 9 21 1 0 86 chain 115172 chr8 146364022 + 130615417 130617001 THE1C-int 1605 - 11 1605 32723 61 1 2 377 1 2 363 9 5 32 6 0 57 22 31 6 1 0 206 0 7 168 50 0 94 0 54 102 10 9 18 chain 86020 chr8 146364022 + 130617640 130618598 L1PA4 6152 - 0 965 41146 6 0 7 952 chain 27125 chr8 146364022 + 130630271 130630626 THE1A 353 + 0 353 95847 84 0 1 4 1 0 3 1 0 17 2 1 243 chain 25253 chr8 146364022 + 130633366 130633636 L1PA3long 6157 + 5628 5898 103465 270 chain 24080 chr8 146364022 + 130633637 130633896 L1PA3long 6157 + 5898 6157 109874 259 chain 28788 chr8 146364022 + 130651897 130652205 AluYb9 318 + 0 306 89948 126 2 0 180 chain 66897 chr8 146364022 + 130657893 130658680 L1PA6 6164 - 6 798 49683 148 5 10 634 chain 74776 chr8 146364022 + 130659170 130660253 MER11A 1151 - 0 1151 46121 155 0 2 6 6 7 14 1 0 46 0 1 37 18 0 21 43 0 19 0 26 124 9 11 19 0 9 115 0 1 94 0 1 149 4 0 66 5 4 46 7 0 24 0 99 55 chain 41513 chr8 146364022 + 130664593 130665059 L1PA4 6152 - 0 472 67264 10 0 6 456 chain 26672 chr8 146364022 + 130717631 130717985 THE1C 375 - 0 375 97419 26 1 0 122 8 1 18 1 2 15 0 28 163 chain 89587 chr8 146364022 + 130728601 130729693 L1PA7 6471 - 1738 2843 39785 349 0 1 503 0 1 50 16 2 141 7 32 26 chain 141208 chr8 146364022 + 130729701 130731441 L1PA7 6471 + 4744 6468 25951 101 0 1 65 1 0 4 0 1 33 1 0 157 5 3 329 2 1 182 1 0 17 1 2 79 5 0 44 3 0 352 1 0 346 4 0 7 chain 39992 chr8 146364022 + 130741554 130742021 L1PA5 6144 - 1 463 69327 8 5 0 454 chain 3527 chr8 146364022 + 130743078 130743136 MER47C 97 - 35 97 214931 27 5 9 26 chain 14143 chr8 146364022 + 130744731 130744929 L1PA15-16 3068 + 226 436 144064 22 5 19 85 2 0 84 chain 516424 chr8 146364022 + 130744936 130751048 L1PA6 6164 + 0 6152 5535 414 3 0 6 1 3 37 6 5 322 0 17 295 16 13 340 0 1 275 1 0 248 7 20 48 0 1 226 0 6 5 0 1 50 0 1 854 0 2 237 10 23 183 0 4 158 0 1 201 1 0 962 22 1 436 4 0 220 1 10 59 0 3 464 chain 135119 chr8 146364022 + 130770275 130772253 L1MA2 4263 + 2081 4054 26992 157 10 10 284 2 1 40 0 1 4 8 7 46 69 66 78 1 0 121 4 7 167 0 1 54 7 8 239 1 0 212 6 3 75 1 0 84 0 2 41 20 17 108 1 0 32 17 19 89 chain 2711 chr8 146364022 + 130805935 130805973 L1PB1 5432 - 5 41 230056 5 1 0 18 1 0 13 chain 124223 chr8 146364022 + 130806264 130808218 L1PBa 3878 - 1468 3080 29612 81 10 2 17 4 3 97 0 1 432 13 2 39 0 1 111 9 10 165 0 2 30 347 15 287 1 2 295 0 4 16 chain 20291 chr8 146364022 + 130811806 130812183 MSTA 426 - 0 426 126248 29 1 5 52 27 47 57 2 0 73 0 4 11 32 56 20 1 2 4 1 0 40 2 1 25 chain 7370 chr8 146364022 + 130814870 130815070 AluJr4 308 + 64 272 174984 38 60 58 5 1 0 13 3 0 5 6 22 13 0 1 32 3 0 21 chain 29957 chr8 146364022 + 130818161 130818510 L1PA4 6152 - 9 357 84949 104 5 9 24 5 0 211 chain 25538 chr8 146364022 + 130827200 130827562 THE1C 375 + 0 375 102065 100 0 3 22 3 0 10 0 4 27 3 4 12 1 2 19 0 1 54 1 0 92 1 0 7 0 8 10 chain 119211 chr8 146364022 + 130842376 130843895 THE1A-int 1579 - 5 1579 31330 345 1 2 7 0 1 95 4 2 160 0 17 261 46 83 177 0 1 423 chain 2802 chr8 146364022 + 130846911 130846941 HAL1 992 + 445 475 228697 30 chain 81642 chr8 146364022 + 130871157 130872157 LTR13 1007 - 0 1007 42911 85 0 2 102 3 4 129 0 2 297 4 5 234 7 8 139 chain 143908 chr8 146364022 + 130918197 130919837 L1PA5 6144 + 4484 6132 25494 40 2 0 816 0 1 32 1 3 367 0 3 134 0 1 119 0 3 129 chain 2998 chr8 146364022 + 130927176 130927600 L1ME1 1623 + 1048 1522 225053 30 328 384 21 0 1 2 23 0 11 0 16 9 chain 50906 chr8 146364022 + 130946730 130947375 PABL_A 660 + 0 660 58364 56 0 4 21 0 9 29 0 1 220 1 0 229 1 0 61 6 9 21 chain 30163 chr8 146364022 + 131000240 131000636 MER48 407 - 10 407 84293 158 0 1 132 13 0 8 0 13 50 1 0 4 0 1 30 chain 32218 chr8 146364022 + 131001897 131002266 L1PA4 6152 - 0 374 80491 6 0 5 102 0 1 225 0 1 29 2 0 5 chain 23385 chr8 146364022 + 131023791 131024114 AluY 311 + 10 311 113734 120 15 0 9 5 5 142 2 0 17 5 0 8 chain 4946 chr8 146364022 + 131027678 131027737 MIRc 230 - 124 183 195739 59 chain 2906 chr8 146364022 + 131044851 131044884 MER65A 464 + 0 33 226954 33 chain 25175 chr8 146364022 + 131045278 131045566 AluSp 311 + 0 293 103878 243 0 5 45 chain 2862 chr8 146364022 + 131055881 131055913 L1MB7 1623 + 1388 1420 227643 32 chain 6603 chr8 146364022 + 131081818 131081898 U6 107 - 27 107 180427 80 chain 9736 chr8 146364022 + 131115278 131115438 L1MA5 2750 - 2406 2568 161904 17 2 0 37 18 17 40 0 1 6 1 5 39 chain 47677 chr8 146364022 + 131116395 131116967 LTR10C 591 + 3 591 60711 305 0 3 12 2 0 48 0 15 205 chain 22522 chr8 146364022 + 131143134 131143398 AluSc8 310 + 14 280 117924 119 0 2 145 chain 28813 chr8 146364022 + 131145620 131145949 AluYb8 318 + 0 308 89830 293 21 0 15 chain 6936 chr8 146364022 + 131203067 131203153 L1MA4 2864 - 1362 1448 177920 86 chain 28939 chr8 146364022 + 131371864 131372168 AluYb8 318 - 14 318 89275 304 chain 2634 chr8 146364022 + 131382936 131382969 L1MB7 1623 + 1452 1484 231211 27 1 0 5 chain 11466 chr8 146364022 + 131389362 131389614 L1PB1 5432 + 5199 5422 154447 21 2 1 14 2 1 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 7 0 24 1 0 14 12 11 9 1 0 18 chain 81863 chr8 146364022 + 131405998 131407057 MER11B 1079 + 1 1073 42816 258 3 0 301 36 35 50 1 2 39 0 4 9 0 16 18 0 1 29 11 5 285 1 2 18 chain 25118 chr8 146364022 + 131412756 131413052 AluY 311 + 4 298 104181 27 0 1 76 0 1 9 4 0 180 chain 5788 chr8 146364022 + 131440652 131440759 HAL1-2a_MD 234 + 0 83 187296 15 15 0 14 10 1 53 chain 4234 chr8 146364022 + 131459693 131459752 THE1B 368 - 306 368 204118 6 3 0 6 0 6 44 chain 24923 chr8 146364022 + 131482318 131482691 THE1B 368 - 0 366 105202 54 0 1 20 1 0 100 31 24 54 6 7 60 0 1 34 2 0 11 chain 6757 chr8 146364022 + 131484064 131484167 L1MA3 4352 + 3735 3845 179269 14 8 16 62 1 0 18 chain 4545 chr8 146364022 + 131516653 131516711 MLT2C1 407 - 272 330 200294 58 chain 19825 chr8 146364022 + 131523034 131523298 L1PA11 4918 - 411 670 127732 19 1 0 13 2 0 81 10 9 60 1 0 77 chain 23002 chr8 146364022 + 131524677 131525046 THE1D 372 + 0 372 115613 54 9 0 81 0 4 33 58 62 125 0 4 9 chain 29637 chr8 146364022 + 131551428 131551770 L1PA6 6164 - 15 357 86104 342 chain 3954 chr8 146364022 + 131597093 131597140 U5 65 - 18 65 208075 47 chain 28429 chr8 146364022 + 131600384 131600755 THE1B 368 - 0 368 91467 176 2 0 18 9 8 166 chain 28249 chr8 146364022 + 131613650 131614016 THE1B 368 + 0 368 92116 12 3 1 27 0 5 127 2 1 195 chain 2698 chr8 146364022 + 131621740 131621770 MLT2C1 407 + 12 42 230244 30 chain 22614 chr8 146364022 + 131625449 131625812 THE1D 372 + 0 360 117513 57 29 0 8 1 11 52 0 4 29 0 4 23 6 8 42 2 8 114 chain 11228 chr8 146364022 + 131629544 131629771 L1PA13 3608 + 113 321 155315 23 5 2 25 1 0 14 3 0 23 28 18 68 8 6 29 chain 12642 chr8 146364022 + 131629772 131629933 MLT2A2 560 - 0 172 149674 147 0 11 14 chain 54797 chr8 146364022 + 131630034 131630644 L1PA3long 6157 - 0 610 55845 610 chain 5286 chr8 146364022 + 131632565 131632724 L1M1 2793 - 1915 2049 192146 39 11 8 26 9 8 11 42 21 21 chain 4328 chr8 146364022 + 131668011 131668064 MLT2B4 540 - 487 540 202859 53 chain 74507 chr8 146364022 + 131669495 131670459 MER11A 1151 - 0 1151 46270 167 0 1 17 1 0 41 0 9 28 0 81 117 5 6 9 1 0 137 0 1 93 0 1 149 13 9 15 0 1 39 1 0 76 0 99 55 chain 28107 chr8 146364022 + 131688734 131689034 AluYa5 310 + 0 299 92622 123 1 0 176 chain 3394 chr8 146364022 + 131694423 131694462 MLT1I 406 + 226 265 217197 39 chain 48049 chr8 146364022 + 131711826 131712356 L1PA3long 6157 - 1 530 60444 332 1 0 197 chain 26213 chr8 146364022 + 131717125 131717404 AluYb8 318 + 28 307 99155 279 chain 90091 chr8 146364022 + 131730314 131731843 L1PB1 5432 + 4123 5420 39619 80 1 0 246 0 6 153 19 13 4 1 0 80 3 5 335 1 2 5 1 0 51 171 0 11 1 0 24 1 0 9 1 0 9 17 11 53 2 1 16 30 0 44 1 0 14 1 0 5 19 8 19 8 5 14 2 0 24 1 0 21 1 0 13 2 1 15 chain 258408 chr8 146364022 + 131735166 131738456 L1PA8 5853 - 0 3293 15784 22 0 1 70 27 25 52 2 1 74 2 0 44 1 0 195 0 2 86 1 2 66 53 69 131 0 2 32 3 2 71 8 7 1505 1 0 432 0 4 50 17 1 23 1 0 27 0 2 260 7 8 27 chain 4305 chr8 146364022 + 131747090 131747142 U3 216 + 13 65 203146 52 chain 78789 chr8 146364022 + 131758737 131759694 LTR13A 966 + 0 966 44154 47 6 7 73 0 1 22 0 3 49 1 5 559 1 0 178 0 1 21 chain 32661 chr8 146364022 + 131760304 131760942 MLT2A1 477 - 0 477 79748 34 1 6 21 192 17 14 4 0 88 1 0 6 1 2 116 1 5 25 0 1 96 0 8 38 chain 9320 chr8 146364022 + 131772229 131772343 MER11B 1079 + 0 114 163958 114 chain 115974 chr8 146364022 + 131786269 131787821 THE1B-int 1605 + 13 1589 32469 109 0 19 20 40 0 108 0 3 16 0 3 6 4 1 69 1 0 63 1 26 188 1 0 4 0 1 370 0 1 135 4 21 413 chain 29301 chr8 146364022 + 131819949 131820258 AluYa5 310 + 1 310 87564 309 chain 15604 chr8 146364022 + 131839135 131839315 L1PA6 6164 + 5979 6159 139570 180 chain 2829 chr8 146364022 + 131845659 131845689 L1MA8 2339 - 469 499 228224 30 chain 8507 chr8 146364022 + 131847893 131848054 MER2 342 - 47 205 168255 43 7 8 16 16 17 64 5 0 10 chain 13959 chr8 146364022 + 131869334 131869497 L1PA3long 6157 + 5993 6157 144714 14 0 1 135 1 0 6 0 1 7 chain 21134 chr8 146364022 + 131872883 131873172 L1PA8 5853 - 0 284 123434 90 7 6 16 2 1 58 1 0 73 2 0 40 chain 26089 chr8 146364022 + 131892099 131892466 THE1B 368 + 0 367 99670 15 3 1 24 0 5 43 8 7 73 1 0 74 2 1 124 chain 17245 chr8 146364022 + 131902399 131902600 L1PA5 6144 + 5936 6137 134939 201 chain 40970 chr8 146364022 + 131928744 131929229 MER9a1 513 + 0 513 67955 167 0 1 76 1 23 77 0 5 164 chain 3453 chr8 146364022 + 131932766 131932804 MADE1 96 - 1 39 216147 38 chain 50398 chr8 146364022 + 131934454 131935002 SVA_D 2077 - 0 547 58717 18 2 0 432 0 1 96 chain 8877 chr8 146364022 + 131970747 131971042 THE1B 368 - 61 368 166251 39 4 5 10 84 87 49 62 70 47 chain 7772 chr8 146364022 + 132020639 132020824 THE1D 372 + 136 332 172471 30 70 85 22 5 1 58 chain 30364 chr8 146364022 + 132033760 132034135 THE1C 375 + 0 375 83750 375 chain 34502 chr8 146364022 + 132034369 132034788 L1PA7 6471 - 3 419 76900 7 4 0 139 0 1 269 chain 271238 chr8 146364022 + 132075229 132078237 L1PA3long 6157 - 0 3015 15126 470 0 2 1360 1 2 1087 0 4 90 chain 89656 chr8 146364022 + 132078237 132079218 L1PA3long 6157 + 2163 3145 39711 924 0 1 57 chain 4003 chr8 146364022 + 132080522 132080636 MER33 330 - 76 207 207349 34 47 60 27 0 4 6 chain 97846 chr8 146364022 + 132083166 132084280 L1PA4 6152 - 0 1115 37321 339 0 1 413 0 1 8 1 0 353 chain 200467 chr8 146364022 + 132092977 132095231 L1PA4 6152 + 3892 6146 19175 48 0 1 697 0 5 1350 6 0 153 chain 9144 chr8 146364022 + 132104049 132104154 Tigger1 2417 + 2251 2356 164841 105 chain 24125 chr8 146364022 + 132113699 132114075 THE1C 375 - 0 375 109613 158 31 33 61 20 17 106 chain 13389 chr8 146364022 + 132124019 132124235 L1PA16 3655 - 70 285 146756 8 3 0 141 28 30 36 chain 73807 chr8 146364022 + 132146829 132147864 MER11A 1151 - 0 1151 46613 63 4 3 9 0 6 208 5 2 54 2 1 56 0 4 54 16 18 114 10 21 4 0 1 92 0 1 51 0 1 94 8 5 122 23 121 46 chain 38565 chr8 146364022 + 132158548 132158998 L1PA4 6152 - 1 453 71347 7 0 1 137 9 10 297 chain 261879 chr8 146364022 + 132169170 132172696 HERVL-int 5654 - 2424 5654 15597 699 4 5 477 0 1 298 0 1 4 1 0 63 0 1 226 299 0 104 1 0 235 0 1 1115 chain 2337 chr8 146364022 + 132218709 132218733 L1PA4 6152 + 5995 6019 234911 24 chain 12042 chr8 146364022 + 132218734 132218866 L1PA4 6152 + 6019 6151 152017 132 chain 39400 chr8 146364022 + 132220511 132220976 L1PA7 6471 - 9 476 70162 154 0 1 49 0 1 262 chain 28931 chr8 146364022 + 132236837 132237140 AluYb8 318 + 0 303 89324 303 chain 540639 chr8 146364022 + 132243862 132250032 L1PA4 6152 - 1 6146 2717 843 0 4 1039 0 3 106 1 0 536 0 1 605 0 1 154 0 1 2016 29 0 254 3 0 11 1 0 257 6 5 309 chain 24904 chr8 146364022 + 132259841 132260187 THE1A 353 + 0 342 105320 110 1 0 145 0 1 43 19 15 28 chain 537670 chr8 146364022 + 132262608 132268718 L1PA3long 6157 + 6 6149 3209 120 0 14 181 0 4 610 0 4 287 5 1 22 1 0 162 0 9 1599 0 1 151 1 0 1932 4 0 201 0 4 698 1 8 135 chain 533283 chr8 146364022 + 132274341 132281601 L1PA4 6152 + 0 6151 3810 512 0 1 63 1 0 259 17 0 401 1 0 575 0 2 46 2 3 281 0 1 5 1 0 561 0 1 124 1 5 217 0 1 110 1 2 33 1 0 61 1105 0 955 0 1 127 0 4 1800 chain 28628 chr8 146364022 + 132277622 132277959 L1PA3long 6157 + 5059 5400 90620 251 1 5 85 chain 66950 chr8 146364022 + 132277959 132278712 L1PA3long 6157 + 5403 6157 49667 604 1 2 148 chain 82666 chr8 146364022 + 132309247 132310151 L1PA3long 6157 + 5245 6149 42476 904 chain 284708 chr8 146364022 + 132322813 132326484 HERVH-int 3825 + 0 3825 14370 530 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 64 12 14 1 0 13 29 25 123 1 0 650 9 0 29 0 2 10 1 0 188 21 20 62 0 2 37 0 1 53 0 1 252 8 13 41 0 4 159 0 1 168 0 2 605 0 2 39 8 218 72 39 39 149 0 2 140 12 6 79 chain 88898 chr8 146364022 + 132333291 132334306 L1PA4 6152 - 1968 2987 40045 762 1 5 252 chain 139812 chr8 146364022 + 132334308 132335862 L1PA4 6152 - 2988 4544 26169 649 0 2 479 1 0 323 0 1 102 chain 105075 chr8 146364022 + 132335864 132337050 L1PA4 6152 + 4191 5376 35482 444 1 0 741 chain 68219 chr8 146364022 + 132337052 132337828 L1PA4 6152 + 5376 6152 49152 776 chain 87437 chr8 146364022 + 132349874 132351117 HSMAR1 1287 + 8 1248 40585 117 3 0 29 0 11 43 9 7 62 6 1 286 8 7 64 39 37 439 21 20 117 chain 42208 chr8 146364022 + 132369690 132370230 MER9a2 513 + 0 511 66392 101 0 1 187 34 0 92 0 4 126 chain 40770 chr8 146364022 + 132385453 132385984 L1HS 6032 - 1520 6021 68214 404 0 3970 127 chain 13254 chr8 146364022 + 132420783 132420960 L1MA1 4479 - 328 501 147267 9 1 0 35 2 0 29 1 0 100 chain 8589 chr8 146364022 + 132429995 132430187 MLT1C 463 + 0 181 167797 27 5 0 52 56 51 4 1 0 47 chain 22697 chr8 146364022 + 132440657 132441017 THE1B 368 - 0 368 117088 56 7 6 63 11 15 13 17 24 22 3 1 168 chain 110454 chr8 146364022 + 132450373 132451628 L1PA4 6152 - 9 1264 34086 159 0 1 171 1 0 137 0 3 6 8 5 773 chain 33371 chr8 146364022 + 132463791 132464210 L1PA7 6471 - 206 627 78616 144 9 11 98 0 2 5 2 0 161 chain 16276 chr8 146364022 + 132464210 132464407 L1PA7 6471 + 6273 6468 137537 186 2 0 9 chain 4738 chr8 146364022 + 132472281 132472331 L1PA4 6152 + 5950 6000 198042 50 chain 13037 chr8 146364022 + 132472332 132472481 L1PA4 6152 + 6003 6152 148091 149 chain 17418 chr8 146364022 + 132485392 132485625 THE1D-int 1627 + 0 234 134464 193 14 15 26 chain 6566 chr8 146364022 + 132499810 132499966 LTR12C 1709 + 877 1033 143935 156 chain 54907 chr8 146364022 + 132500000 132500828 LTR12C 1709 + 707 1709 55766 12 0 159 190 8 71 76 46 15 91 0 2 162 29 6 50 1 0 71 18 23 74 chain 30796 chr8 146364022 + 132518880 132519277 L1PA7 6471 - 3 394 82873 34 9 0 7 0 9 61 7 1 279 chain 27031 chr8 146364022 + 132524353 132524747 MLT2A1 477 - 81 477 96184 9 4 0 191 2 1 23 26 33 139 chain 6559 chr8 146364022 + 132536611 132536697 L1PA7 6471 + 6382 6465 180785 72 3 0 11 chain 256018 chr8 146364022 + 132559093 132561984 L1PA3long 6157 - 1402 4307 15935 448 0 1 172 0 1 192 0 3 669 0 5 66 0 4 504 1 0 17 2 3 269 0 1 97 1 0 453 chain 129048 chr8 146364022 + 132561984 132563390 L1PA3long 6157 + 4751 6157 28280 1406 chain 349268 chr8 146364022 + 132580936 132586055 L1PB1 5432 - 5 4874 11629 4 1 0 19 1 0 9 5 4 21 1 0 22 19 16 5 2 0 19 25 12 15 1 0 19 3 5 21 6 5 10 2 1 53 2 0 5 125 141 42 3 2 269 1 3 21 1 0 45 1 0 7 6 1 9 0 1 96 0 1 146 2 1 20 0 1 135 0 1 156 0 8 93 0 1 228 0 7 169 4 10 308 2 0 37 21 25 440 2 1 4 1 0 41 7 16 129 5 4 296 1 0 49 0 4 341 6 10 60 6 1 302 8 0 76 1 4 121 0 1 241 0 1 6 0 1 11 273 0 40 7 8 212 0 3 182 0 1 14 chain 48107 chr8 146364022 + 132594601 132595171 LTR22 571 - 4 571 60397 279 5 6 30 5 1 251 chain 117375 chr8 146364022 + 132606960 132608319 L1PA5 6144 - 1 1375 32005 9 2 0 136 3 1 6 0 2 701 0 1 59 0 5 105 0 10 156 0 1 182 chain 60422 chr8 146364022 + 132608319 132608988 L1PA5 6144 + 4085 4754 52519 669 chain 18868 chr8 146364022 + 132612726 132612950 L1PA7 6471 - 1 224 130466 4 1 0 219 chain 536417 chr8 146364022 + 132647419 132653435 L1PA3long 6157 + 4 6156 3391 149 1 2 621 0 128 1422 1 0 370 0 1 716 12 12 987 0 5 27 0 1 129 0 1 66 1 0 1009 0 1 505 chain 14932 chr8 146364022 + 132656382 132656571 HSMAR1 1287 + 1083 1279 141530 127 0 4 24 0 3 38 chain 37161 chr8 146364022 + 132661448 132661949 MER41C 542 - 10 541 73295 192 8 29 74 3 6 90 5 9 84 0 2 45 chain 6667 chr8 146364022 + 132712718 132712800 MSTB1 431 - 280 362 179931 82 chain 317401 chr8 146364022 + 132753400 132757212 HERVH-int 3825 + 0 3825 12708 319 15 14 43 0 2 68 1 0 86 5 0 37 2 1 10 1 0 24 1 52 25 42 0 16 1 0 82 1 0 907 0 5 365 1 0 108 0 1 136 0 1 1303 0 7 213 chain 25857 chr8 146364022 + 132775885 132776239 THE1B 368 - 0 355 100618 75 1 0 93 2 0 26 3 2 119 8 13 27 chain 551255 chr8 146364022 + 132783196 132789173 L1PA2 6032 + 48 6028 1281 2218 0 3 3759 chain 49481 chr8 146364022 + 132798832 132799489 LTR12_ 688 + 0 688 59403 54 1 2 190 6 5 153 10 8 133 3 36 107 chain 247992 chr8 146364022 + 132832683 132835684 HERVH-int 3825 + 826 3825 16362 746 5 0 165 1 3 39 0 1 216 0 2 88 10 15 208 18 7 180 8 9 762 0 1 140 36 37 156 0 1 223 chain 29692 chr8 146364022 + 132836942 132837352 LTR7 482 + 0 482 85859 68 9 47 109 0 1 8 0 31 155 12 14 49 chain 108885 chr8 146364022 + 132842558 132843852 L1PA7 6471 + 5176 6467 34467 445 1 0 144 0 1 27 1 0 650 0 1 15 3 0 8 chain 21963 chr8 146364022 + 132865152 132865411 L1PA7 6471 + 5863 6131 120383 241 0 9 18 chain 27563 chr8 146364022 + 132865411 132865738 L1PA7 6471 + 6132 6459 94458 327 chain 15195 chr8 146364022 + 132866180 132867815 L1PA5 6144 - 23 282 140786 164 1437 61 34 chain 23138 chr8 146364022 + 132867817 132868069 L1PA5 6144 + 5885 6137 114949 252 chain 163409 chr8 146364022 + 132883462 132885242 L1PA3long 6157 + 4378 6157 22891 1520 1 0 259 chain 517118 chr8 146364022 + 132889950 132896136 L1PA6 6164 - 2 6164 5471 78 7 8 761 5 0 1423 8 14 1513 0 1 39 0 2 415 0 1 333 12 6 105 0 1 165 8 2 190 0 1 250 1 2 50 17 0 12 3 0 323 1 0 267 1 0 4 0 1 195 chain 41972 chr8 146364022 + 132923781 132924408 MER39B 650 - 4 650 66655 44 1 0 52 19 17 76 28 32 44 2 6 69 3 4 245 4 16 21 0 1 19 chain 468389 chr8 146364022 + 132973125 132978459 L1PA4 6152 + 803 6143 8093 98 1 0 138 0 1 519 0 2 936 7 8 92 10 0 451 1 0 1478 2 4 108 0 5 22 1 0 30 0 1 586 9 8 14 0 7 727 0 1 104 chain 24924 chr8 146364022 + 132983653 132983949 AluYf5 307 + 0 297 105197 206 8 9 82 chain 6376 chr8 146364022 + 133028160 133028239 L1MB7 1623 - 465 544 182200 79 chain 22192 chr8 146364022 + 133030178 133030435 AluYk4 311 + 38 295 119389 257 chain 6989 chr8 146364022 + 133038236 133038399 MER53 195 - 5 193 177544 15 8 9 20 28 51 20 6 7 66 chain 3241 chr8 146364022 + 133079472 133079531 LTR33A_ 513 - 306 364 220214 11 2 0 24 5 6 17 chain 10930 chr8 146364022 + 133091185 133091310 L1PA4 6152 - 18 143 156487 125 chain 40603 chr8 146364022 + 133092484 133092935 LTR7 482 - 0 482 68432 187 0 31 264 chain 293983 chr8 146364022 + 133094181 133097796 HERVH-int 3825 - 9 3825 13765 478 8 218 672 1 0 732 4 31 462 15 0 133 0 1 9 1 0 298 3 6 10 0 2 13 4 0 52 2 1 38 67 57 14 20 15 4 1 0 30 11 6 483 0 1 50 chain 40865 chr8 146364022 + 133097798 133098249 LTR7 482 - 0 482 68073 187 0 31 264 chain 19296 chr8 146364022 + 133169921 133170170 L1PA8 5853 - 0 245 129254 93 1 0 19 2 1 50 1 0 11 1 0 71 chain 6295 chr8 146364022 + 133223575 133223656 LTR37A 408 + 69 149 182848 59 1 0 21 chain 75705 chr8 146364022 + 133233067 133233944 L1PA6 6164 - 2 879 45647 81 1 0 345 0 1 450 chain 45148 chr8 146364022 + 133233944 133234452 L1PA6 6164 + 4785 5294 62869 456 0 1 52 chain 18183 chr8 146364022 + 133261585 133261815 LTR12C 1709 - 500 777 132377 90 9 56 131 chain 56791 chr8 146364022 + 133264403 133265108 LTR12_ 688 - 0 688 54659 163 0 1 360 18 1 138 1 0 25 chain 5255 chr8 146364022 + 133280404 133280495 L1MC1 2226 - 223 309 192453 8 2 0 9 9 6 63 chain 25954 chr8 146364022 + 133284720 133285080 THE1B 368 - 0 366 100190 49 5 13 114 2 0 28 1 0 43 13 14 105 chain 14965 chr8 146364022 + 133285081 133285261 THE1B-int 1605 - 0 181 141434 5 0 1 175 chain 25621 chr8 146364022 + 133286362 133286724 THE1B 368 - 0 368 101619 49 5 13 104 2 0 30 1 0 41 12 13 118 chain 5259 chr8 146364022 + 133298768 133298923 MSTB2-int 240 + 83 235 192426 28 6 5 35 61 59 25 chain 5484 chr8 146364022 + 133299067 133299315 MSTB2 466 + 177 444 190179 35 9 0 20 146 160 16 0 14 22 chain 92354 chr8 146364022 + 133308639 133309666 L1PA4 6152 - 1 1028 38857 107 0 1 659 5 4 256 chain 7570 chr8 146364022 + 133316219 133316380 L1PB4 2604 + 2407 2570 173724 72 6 0 6 42 51 16 1 0 18 chain 24791 chr8 146364022 + 133324790 133325167 THE1D 372 + 0 372 105942 56 10 1 131 40 38 12 0 6 128 chain 58743 chr8 146364022 + 133352263 133353031 L1PA8 5853 + 5099 5853 53554 465 1 0 44 2 0 71 1 0 6 10 6 8 6 0 11 5 7 23 2 1 19 1 0 93 chain 3512 chr8 146364022 + 133405649 133405752 MER58A 224 - 77 179 215194 18 44 45 13 2 0 26 chain 2638 chr8 146364022 + 133407584 133407612 L1MA5A 2387 - 91 119 231189 28 chain 9806 chr8 146364022 + 133432237 133432534 MLT1A0 366 - 48 336 161571 39 4 5 26 121 110 15 15 16 47 1 0 6 0 1 23 chain 28795 chr8 146364022 + 133449244 133449554 AluYf4 310 + 0 310 89920 310 chain 3857 chr8 146364022 + 133462489 133462672 LTR12 884 - 507 571 209482 32 127 8 24 chain 16566 chr8 146364022 + 133476165 133476352 AluSx1 309 + 16 203 136746 187 chain 14891 chr8 146364022 + 133487121 133487479 THE1D 372 + 0 372 141657 57 161 169 12 0 6 128 chain 45856 chr8 146364022 + 133522564 133523147 THE1B-int 1605 - 993 1605 62173 78 0 1 79 1 26 318 10 13 97 chain 23462 chr8 146364022 + 133531253 133531534 AluY 311 + 11 294 113301 120 0 2 161 chain 20564 chr8 146364022 + 133567784 133568034 AluY 311 + 36 288 125414 96 0 1 56 0 1 98 chain 287532 chr8 146364022 + 133610944 133614172 L1PA5 6144 + 2904 6138 14187 127 0 1 1069 0 2 239 2 3 283 1 0 340 0 1 387 0 1 455 0 1 325 chain 16746 chr8 146364022 + 133618277 133618572 Tigger3b 1229 + 43 337 136270 63 37 41 126 11 10 8 1 0 38 3 0 8 chain 9504 chr8 146364022 + 133618577 133618701 Tigger3 1187 + 422 571 163052 106 0 25 18 chain 5575 chr8 146364022 + 133628979 133629048 LTR10G 522 - 35 106 189324 37 0 2 32 chain 25950 chr8 146364022 + 133629647 133629941 L1PA3long 6157 - 1754 2073 100215 45 0 4 143 0 21 106 chain 162107 chr8 146364022 + 133629942 133631703 L1PA3long 6157 + 4395 6156 23047 1761 chain 25275 chr8 146364022 + 133643982 133644261 L1PA4 6152 + 5862 6141 103345 279 chain 523349 chr8 146364022 + 133656613 133662759 L1PA5 6144 + 0 6129 4831 135 31 45 958 10 8 23 9 0 66 0 1 116 0 5 398 0 1 554 15 8 599 29 6 104 0 1 61 0 4 393 0 4 1145 15 8 325 0 1 1160 chain 32255 chr8 146364022 + 133664826 133665194 L1PA7 6471 + 6099 6468 80431 339 0 1 29 chain 6792 chr8 146364022 + 133677735 133677840 L1PA17 2846 + 2591 2693 179013 41 1 0 18 1 0 30 2 1 12 chain 12883 chr8 146364022 + 133690352 133690652 LTR56 451 + 0 274 148690 16 1 0 18 1 0 49 112 88 103 chain 26634 chr8 146364022 + 133727372 133727684 AluY 311 + 1 311 97533 12 0 1 119 4 1 177 chain 73199 chr8 146364022 + 133736071 133737078 MER11A 1151 - 0 1142 46923 60 7 6 117 0 1 108 7 41 15 7 6 50 0 4 53 1 0 8 6 9 114 1 0 20 0 1 88 9 10 51 0 1 94 4 0 64 1 0 57 1 100 64 chain 25764 chr8 146364022 + 133740410 133740787 THE1B 368 - 0 368 101026 56 7 6 76 1 0 37 25 18 175 chain 89766 chr8 146364022 + 133753553 133754560 LTR13 1007 - 0 1007 39731 278 0 1 424 1 0 304 chain 27709 chr8 146364022 + 133755029 133755383 THE1B 368 - 0 368 94007 192 1 0 116 3 18 42 chain 23393 chr8 146364022 + 133769792 133770093 AluY 311 + 2 304 113680 28 6 7 85 1 0 4 0 1 177 chain 5693 chr8 146364022 + 133884131 133884199 Tigger3b 1229 + 36 104 188178 68 chain 14490 chr8 146364022 + 133970066 133970344 L1PB1 5432 - 21 274 142915 7 1 0 13 1 0 21 1 0 22 26 21 17 9 0 13 4 1 16 1 0 43 1 0 15 3 2 50 3 1 11 chain 10914 chr8 146364022 + 133972126 133972252 MER107 203 - 72 198 156543 126 chain 38437 chr8 146364022 + 134036650 134037148 L1PA8 5853 - 0 490 71531 92 4 3 17 2 1 52 2 1 7 2 1 11 1 0 58 2 0 46 1 0 201 chain 7352 chr8 146364022 + 134037148 134037232 L1PA8 5853 + 5283 5367 175080 84 chain 22097 chr8 146364022 + 134078324 134078589 AluY 311 + 38 301 119798 92 2 0 171 chain 2946 chr8 146364022 + 134115834 134115873 ORSL 269 - 127 190 226184 11 0 24 28 chain 23264 chr8 146364022 + 134197828 134198132 AluY 311 + 0 301 114363 69 9 5 43 0 3 13 1 0 147 3 2 19 chain 12956 chr8 146364022 + 134247428 134247610 MER4A1 472 + 288 472 148407 103 11 13 68 chain 19265 chr8 146364022 + 134288666 134288997 THE1B 368 + 0 306 129336 169 1 0 4 27 0 17 9 10 14 27 29 63 chain 17689 chr8 146364022 + 134322603 134322850 L1PA8 5853 + 5608 5852 133730 68 4 3 57 6 5 19 2 1 91 chain 29790 chr8 146364022 + 134329455 134329766 AluYb8 318 - 7 318 85502 311 chain 32438 chr8 146364022 + 134357027 134357392 L1PA4 6152 + 5780 6143 80132 5 3 0 223 0 1 134 chain 25493 chr8 146364022 + 134359701 134360034 THE1B 368 + 0 349 102257 44 15 30 98 1 0 26 0 2 149 chain 3631 chr8 146364022 + 134395275 134395330 MER58B 340 + 66 122 213143 29 5 6 21 chain 29992 chr8 146364022 + 134423511 134423827 AluYb8 318 + 0 316 84830 316 chain 9166 chr8 146364022 + 134432299 134432430 Tigger1 2417 - 2236 2379 164732 62 0 2 28 0 11 24 6 5 11 chain 13158 chr8 146364022 + 134437425 134437611 THE1B 368 + 0 180 147619 22 6 0 35 1 2 110 1 0 11 chain 15486 chr8 146364022 + 134451317 134451619 MER2 342 + 24 298 139933 44 25 33 133 5 0 36 41 10 18 chain 3864 chr8 146364022 + 134512870 134512942 MIR 256 + 95 168 209379 38 7 11 7 3 0 17 chain 38454 chr8 146364022 + 134523939 134524815 MLT2A2 560 - 2 560 71513 71 312 0 281 8 0 26 1 0 96 44 51 6 4 0 27 chain 13965 chr8 146364022 + 134543857 134544052 L1PA8 5853 + 5644 5847 144689 35 1 0 9 1 0 7 0 7 37 0 4 17 1 0 87 chain 9620 chr8 146364022 + 134548035 134548177 Tigger1 2417 + 2216 2350 162493 37 2 0 33 5 0 47 1 0 17 chain 7204 chr8 146364022 + 134590515 134590616 Tigger3 1187 + 171 269 176046 15 6 3 80 chain 30860 chr8 146364022 + 134619740 134620165 LTR7B 505 + 0 498 82751 103 3 12 60 0 38 11 4 28 26 0 2 42 0 1 44 1 0 21 0 1 52 14 13 44 chain 5679 chr8 146364022 + 134725081 134725150 MER5A 189 - 22 91 188311 69 chain 26438 chr8 146364022 + 134733488 134733852 THE1B 368 + 0 368 98275 169 1 0 29 0 3 8 1 5 18 1 0 4 9 8 124 chain 58367 chr8 146364022 + 134741164 134741795 L1PA2 6032 + 5401 6032 53765 631 chain 25260 chr8 146364022 + 134761481 134761770 AluY 311 + 10 299 103412 122 0 1 134 1 0 32 chain 28604 chr8 146364022 + 134762693 134763006 AluYa5 310 - 0 310 90716 192 3 0 118 chain 159926 chr8 146364022 + 134769110 134771290 SVA_D 2077 + 6 2064 23348 14 3 0 15 3 1 17 6 0 326 0 4 33 2 1 481 335 200 290 0 1 4 25 24 27 0 1 476 0 20 123 chain 27191 chr8 146364022 + 134770024 134770332 SVA_F 1814 + 893 1219 95623 43 0 1 10 1 16 106 0 1 144 0 1 4 chain 239585 chr8 146364022 + 134808047 134811148 L1PA8A 6298 + 3165 6291 16795 201 1 0 38 0 1 180 1 9 16 1 12 188 22 19 48 1 2 178 0 1 342 0 1 6 0 2 6 6 4 280 1 2 61 4 5 135 7 6 58 6 5 518 0 3 395 0 2 266 23 24 112 chain 10735 chr8 146364022 + 134811212 134811355 THE1D 372 + 219 372 157259 19 2 8 114 0 4 8 chain 13975 chr8 146364022 + 134811464 134811648 MER30 238 - 27 238 144667 37 0 1 11 1 0 33 1 28 101 chain 139501 chr8 146364022 + 134813926 134815507 L1PA5 6144 + 4557 6143 26218 736 0 5 513 0 3 318 4 1 10 chain 18225 chr8 146364022 + 134862094 134862296 L1PA5 6144 - 13 214 132271 100 1 0 101 chain 50211 chr8 146364022 + 134877530 134878148 L1P2 5180 - 3389 4008 58859 510 9 10 99 chain 312727 chr8 146364022 + 134878151 134881729 L1PA5 6144 + 2537 6132 12902 627 1 0 12 2 0 134 0 1 1033 0 4 99 0 3 633 0 1 178 0 1 31 2 0 22 8 9 395 1 2 213 0 10 187 chain 129886 chr8 146364022 + 134889371 134890947 L1P2 5180 - 1658 3233 28112 259 0 7 44 0 3 20 1 0 861 0 1 4 11 0 376 chain 25246 chr8 146364022 + 134892391 134892696 AluYk4 311 + 0 300 103499 118 5 0 182 chain 4713 chr8 146364022 + 134932637 134932697 MLT1H2 457 - 0 60 198361 60 chain 5117 chr8 146364022 + 134934461 134934565 MER45B 1037 + 724 837 193898 46 29 38 29 chain 23150 chr8 146364022 + 134945697 134946061 THE1D 372 - 0 347 114893 148 1 0 24 14 16 98 11 12 28 18 0 17 1 0 4 chain 36701 chr8 146364022 + 134946486 134946968 LTR10F 562 + 0 562 73957 147 7 57 13 2 33 248 3 2 62 chain 33405 chr8 146364022 + 134949006 134949456 MER4A1 472 + 2 472 78556 13 0 2 89 16 13 107 5 26 220 chain 7666 chr8 146364022 + 134955212 134955308 LTR8A 794 - 483 579 173134 96 chain 3497 chr8 146364022 + 134955947 134956006 MLT2B2 565 + 508 563 215410 6 2 0 10 3 0 25 0 1 13 chain 5832 chr8 146364022 + 134956352 134956502 L1PB1 5432 + 5270 5422 186845 11 1 0 15 1 0 4 2 0 7 9 1 18 14 31 13 2 1 21 1 0 13 1 0 17 chain 22461 chr8 146364022 + 134965559 134965938 THE1D 372 - 0 372 118197 149 1 0 14 13 19 6 4 0 82 36 37 18 10 1 46 chain 22550 chr8 146364022 + 134987168 134987450 AluSg7 307 - 11 297 117803 16 0 6 115 1 0 27 1 0 122 chain 48340 chr8 146364022 + 135015822 135016393 L1PA7 6471 - 12 589 60213 308 1 6 234 0 1 28 chain 138554 chr8 146364022 + 135040344 135042085 L1PA8 5853 - 37 1772 26385 55 3 2 17 9 8 39 8 7 9 1 0 71 2 0 44 1 0 511 12 13 31 0 2 55 0 1 48 1 0 569 1 0 82 1 0 171 chain 19423 chr8 146364022 + 135073181 135073416 AluY 311 + 26 261 128887 96 0 1 10 1 0 128 chain 50733 chr8 146364022 + 135078827 135079403 L1PA4 6152 + 5578 6152 58478 418 7 0 145 0 5 6 chain 568222 chr8 146364022 + 135082986 135089016 L1HS 6032 - 0 6031 19 5959 0 1 71 chain 72656 chr8 146364022 + 135101201 135102015 L1PA3long 6157 - 905 1720 46929 650 0 1 164 chain 83383 chr8 146364022 + 135102015 135102934 L1PA3long 6157 + 5232 6152 42164 591 0 1 328 chain 18888 chr8 146364022 + 135117991 135118276 THE1B 368 + 87 368 130399 85 47 43 153 chain 23192 chr8 146364022 + 135119852 135120173 THE1B 368 + 0 356 114713 117 30 66 17 1 0 156 chain 23457 chr8 146364022 + 135163509 135163806 AluYf5 307 + 26 304 113338 97 2 0 3 1 0 80 23 7 91 chain 30936 chr8 146364022 + 135166063 135166448 L1PA7 6471 - 4 385 82621 6 4 0 23 0 2 121 2 0 8 0 1 65 3 2 153 chain 41625 chr8 146364022 + 135166461 135166942 L1PA4 6152 - 6 486 67124 118 1 0 362 chain 8946 chr8 146364022 + 135194582 135194708 L1PA8 5853 - 93 216 165889 19 2 1 52 2 1 5 1 0 45 chain 155660 chr8 146364022 + 135201835 135203537 L1PA3long 6157 - 2 1705 23895 336 0 1 1366 chain 3235 chr8 146364022 + 135225767 135225815 MADE1 96 + 45 94 220322 26 1 2 21 chain 52020 chr8 146364022 + 135230412 135231175 L1PB3 3668 + 73 838 57612 34 47 33 292 6 18 111 0 2 18 16 19 55 9 8 175 chain 3031 chr8 146364022 + 135243512 135243547 MER53 195 - 160 195 224362 35 chain 119761 chr8 146364022 + 135273060 135274621 THE1B-int 1605 + 0 1597 31131 64 0 1 120 8 10 64 0 1 166 0 25 119 6 10 53 3 6 352 6 7 4 1 0 595 chain 22528 chr8 146364022 + 135285073 135285327 L1PA3long 6157 + 5888 6157 117902 129 0 15 125 chain 5652 chr8 146364022 + 135286440 135286661 MLT1C 463 + 72 294 188542 52 100 104 16 33 30 20 chain 24262 chr8 146364022 + 135291142 135291440 AluY 311 + 10 311 108887 99 1 3 20 0 1 178 chain 79973 chr8 146364022 + 135300356 135301255 MER11D 897 + 0 897 43610 783 3 1 113 chain 10673 chr8 146364022 + 135312128 135313169 HSMAR2 1300 + 140 1299 157515 36 835 957 24 4 0 18 4 0 46 10 14 64 chain 332692 chr8 146364022 + 135319759 135323536 L1PA4 6152 - 0 3783 12102 486 10 7 351 0 4 819 0 2 125 0 4 1342 1 0 643 chain 5769 chr8 146364022 + 135333419 135333529 L1PREC2 3366 - 342 437 187448 14 0 2 37 22 8 11 3 0 23 chain 26218 chr8 146364022 + 135340864 135341331 THE1B 368 - 8 368 99132 41 128 17 110 2 0 19 2 1 102 0 7 63 chain 10111 chr8 146364022 + 135340910 135341033 THE1B 368 - 62 183 158872 114 2 0 7 chain 25547 chr8 146364022 + 135345581 135345925 THE1A 353 + 0 353 102005 100 11 10 92 1 0 108 1 12 31 chain 290795 chr8 146364022 + 135361921 135365721 L1PA10 4194 - 33 3824 13973 11 8 0 10 0 7 17 3 0 25 14 9 641 0 3 5 0 1 61 12 8 205 1 2 11 1 2 187 1 0 189 0 1 15 0 1 34 0 1 36 2 1 48 0 1 62 0 1 67 6 5 246 0 5 8 1 3 120 3 4 65 1 2 18 0 3 858 6 1 671 4 2 85 2 0 6 8 2 15 1 0 10 chain 25952 chr8 146364022 + 135366130 135366460 L1PA10 4194 + 829 1161 100197 56 0 1 152 4 5 118 chain 26886 chr8 146364022 + 135368424 135368792 THE1B 368 - 0 368 96686 75 1 0 93 0 2 24 1 0 62 4 5 59 0 1 34 2 0 13 chain 32732 chr8 146364022 + 135372939 135373377 MER1A 529 - 0 433 79638 62 21 12 53 0 3 46 0 1 256 chain 24329 chr8 146364022 + 135390335 135390720 MER50 708 + 0 392 108497 45 1 10 40 10 11 55 10 11 117 4 1 69 17 16 17 chain 76443 chr8 146364022 + 135390746 135391615 MER11D 897 - 0 893 45239 295 1 24 113 0 1 460 chain 5560 chr8 146364022 + 135403046 135403112 L1MA5A 2387 + 2230 2296 189482 66 chain 49947 chr8 146364022 + 135428425 135428955 L1HS 6032 - 873 1403 58916 530 chain 81047 chr8 146364022 + 135428955 135429827 L1HS 6032 + 5157 6030 43167 355 0 1 517 chain 9206 chr8 146364022 + 135461007 135461110 L1PA4 6152 - 181 283 164524 5 1 0 97 chain 14377 chr8 146364022 + 135461111 135461271 L1PA4 6152 + 5992 6151 143274 4 1 0 155 chain 81447 chr8 146364022 + 135527058 135528000 L1PA7 6471 - 5 950 42991 157 1 2 169 0 1 132 2 0 388 0 3 93 chain 3604 chr8 146364022 + 135602947 135603057 HAL1-2a_MD 234 + 64 231 213588 13 2 8 16 25 0 15 12 88 27 chain 26024 chr8 146364022 + 135630081 135630435 THE1A 353 + 7 353 99926 100 14 13 82 1 0 114 7 1 36 chain 23204 chr8 146364022 + 135658164 135658464 AluSq4 311 + 1 295 114669 81 1 0 36 7 0 7 1 2 135 0 1 32 chain 4922 chr8 146364022 + 135665419 135665475 L1PA4 6152 - 6 62 196018 56 chain 22575 chr8 146364022 + 135679191 135679851 L1PA8 5853 + 5506 5853 117693 56 1 0 116 2 1 14 1 0 45 8 7 15 317 1 32 0 8 46 1 0 6 chain 428183 chr8 146364022 + 135679873 135684810 L1PA5 6144 + 0 6144 9348 199 1 3 371 0 1 26 2 0 74 0 5 606 0 1 1026 0 1 2397 8 1206 4 0 1 60 23 23 140 chain 486102 chr8 146364022 + 135686219 135692345 L1PA7 6471 + 5 6470 7521 324 11 181 11 0 2 147 0 1 4 5 4 34 0 113 160 7 0 272 0 40 197 0 3 534 0 12 217 1 0 262 0 14 36 0 2 66 17 1 764 0 4 93 1 0 234 1 2 259 20 12 7 0 1 10 0 1 181 0 2 340 1 3 109 0 4 162 0 7 95 0 2 48 1 0 53 10 6 356 1 2 222 1 0 245 0 2 269 1 0 183 8 4 146 chain 37382 chr8 146364022 + 135781022 135783995 THE1B-int 1605 - 9 1605 72986 111 2443 1060 309 0 3 77 0 2 21 0 1 12 chain 25895 chr8 146364022 + 135783995 135784347 THE1B 368 - 0 368 100463 7 1 0 199 1 0 45 9 12 50 0 15 40 chain 14821 chr8 146364022 + 135795569 135795788 MER1B 344 + 92 344 141881 41 7 34 87 16 22 68 chain 20905 chr8 146364022 + 135824124 135824381 AluSx1 309 + 20 276 124260 245 1 0 11 chain 6551 chr8 146364022 + 135852141 135852261 L1PB1 5432 + 5308 5420 180839 19 8 5 14 2 0 24 1 0 21 1 0 12 2 1 16 chain 21806 chr8 146364022 + 135854014 135854249 L1PA3long 6157 + 5922 6157 120998 235 chain 25024 chr8 146364022 + 135857955 135858238 L1PA4 6152 - 9 292 104663 283 chain 13625 chr8 146364022 + 135858238 135858386 L1PA4 6152 + 5714 5862 145881 148 chain 6059 chr8 146364022 + 135884168 135884242 LTR50 688 + 17 91 184749 74 chain 18146 chr8 146364022 + 135917133 135917576 L1MA4 2864 + 2379 2789 132469 118 3 2 22 0 3 66 18 32 8 14 0 13 2 1 16 15 14 19 107 74 22 chain 21193 chr8 146364022 + 135919114 135919498 L1PA8 5853 - 0 360 123231 22 0 2 5 22 31 32 29 19 41 6 0 8 5 0 8 10 0 5 2 1 69 2 0 46 1 0 71 chain 132508 chr8 146364022 + 135919981 135921818 L1PB2 3958 - 120 1987 27523 63 1 0 20 4 2 70 1 0 44 0 29 62 1 2 6 2 0 89 2 0 13 2 0 6 0 1 8 0 5 41 5 0 14 1 0 57 2 0 89 6 0 6 6 16 55 0 2 120 0 1 52 0 1 40 0 3 15 0 1 149 4 5 11 2 0 88 0 1 161 6 0 11 6 8 5 0 1 68 0 1 157 2 1 207 5 8 52 chain 33083 chr8 146364022 + 135935795 135936257 MER4A1 472 + 0 472 79073 112 0 5 108 12 15 151 21 23 58 chain 2838 chr8 146364022 + 135947233 135947263 L1MB1 2102 - 112 142 228099 30 chain 3728 chr8 146364022 + 135967151 135967223 L1MA4 2864 - 30 97 211505 17 17 12 38 chain 42511 chr8 146364022 + 135974056 135974603 MLT2A2 560 + 0 560 66001 196 11 12 191 3 14 76 0 1 70 chain 31588 chr8 146364022 + 135977562 135977937 THE1C 375 + 0 375 81512 375 chain 27618 chr8 146364022 + 136007186 136007527 L1PA7 6471 - 12 361 94299 312 0 8 29 chain 4638 chr8 146364022 + 136007770 136007933 MLT1I 406 + 243 406 199212 23 96 96 44 chain 27762 chr8 146364022 + 136026139 136026498 THE1B 368 + 0 368 93829 169 1 0 29 0 2 106 5 13 49 chain 21048 chr8 146364022 + 136053886 136054239 THE1B 368 - 0 368 123738 48 10 14 63 3 11 15 33 33 6 0 2 59 5 6 111 chain 3243 chr8 146364022 + 136066496 136066531 LTR16C 481 + 215 250 220167 35 chain 39879 chr8 146364022 + 136118229 136119175 L1MA1 4479 - 307 928 69487 16 6 1 4 1 0 9 1 0 35 2 0 29 1 0 35 11 10 45 0 1 35 3 0 5 1 0 88 1 0 8 7 5 20 1 0 71 1 0 6 319 14 20 1 0 164 chain 24824 chr8 146364022 + 136118691 136118979 AluSp 311 + 10 298 105744 288 chain 29791 chr8 146364022 + 136158258 136158708 MER4A1 472 - 0 472 85498 169 72 93 127 0 1 82 chain 51858 chr8 146364022 + 136162558 136163156 L1PA4 6152 - 1 594 57713 158 5 0 435 chain 472027 chr8 146364022 + 136163853 136169392 L1PA6 6164 - 3 5541 7970 7 2 0 128 25 23 822 1 2 1077 4 9 298 0 1 493 0 1 4 1 2 96 0 1 12 1 0 860 3 1 938 3 1 172 2 0 590 chain 5338 chr8 146364022 + 136192463 136192583 MER5B 177 - 3 151 191653 23 39 67 58 chain 303721 chr8 146364022 + 136257390 136261824 L1PB1 5432 - 9 4434 13257 19 1 0 12 1 0 22 1 0 24 25 20 15 18 9 8 2 0 12 1 0 20 5 6 19 1 0 15 3 2 52 2 0 9 5 1 11 6 5 4 1 0 16 13 6 10 51 12 296 1 0 73 0 28 48 1 2 11 0 7 158 1 7 371 6 7 264 0 1 53 56 33 122 0 2 59 0 8 64 0 4 411 8 20 224 18 19 259 0 2 15 3 13 15 7 4 69 1 0 4 5 0 174 1 0 63 4 6 161 0 3 81 1 0 238 0 1 176 8 12 38 80 81 43 4 11 102 0 2 116 5 3 112 chain 556105 chr8 146364022 + 136271344 136277373 L1PA2 6032 + 2 6032 712 335 1 0 3431 0 2 2262 chain 14367 chr8 146364022 + 136289340 136289644 L1PA15 4387 - 60 351 143320 11 2 0 19 0 1 4 2 0 22 20 17 37 1 0 7 0 4 7 31 25 5 2 0 38 1 0 22 9 8 64 chain 554857 chr8 146364022 + 136347639 136353781 L1PA3long 6157 + 5 6157 838 1700 0 5 116 1 2 34 1 2 528 0 4 428 1 0 468 1 0 1412 0 1 1452 chain 29859 chr8 146364022 + 136354871 136355272 L1PA8 5853 - 0 394 85242 93 1 0 19 2 1 52 1 0 6 1 0 74 2 0 44 1 0 105 chain 18637 chr8 146364022 + 136367963 136368327 THE1B 368 + 0 368 131115 111 0 3 6 16 14 35 49 45 14 7 15 63 26 25 37 chain 5338 chr8 146364022 + 136370502 136370567 MLT1C 463 + 398 463 191655 65 chain 29056 chr8 146364022 + 136416204 136416514 AluYa5 310 - 0 310 88734 310 chain 9681 chr8 146364022 + 136479202 136479344 L1MA3 4352 + 4183 4322 162188 77 1 0 4 0 1 17 2 1 5 1 0 29 1 0 5 chain 7443 chr8 146364022 + 136496407 136496499 MER72B 755 + 0 92 174495 92 chain 6901 chr8 146364022 + 136547979 136548067 MLT1A1 405 - 36 123 178186 35 1 0 52 chain 70478 chr8 146364022 + 136567985 136568875 L1PA7 6471 - 2 898 48174 113 5 9 461 4 5 140 0 1 20 0 1 98 6 5 43 chain 33957 chr8 146364022 + 136695055 136695446 L1PA5 6144 - 0 387 77682 170 4 0 217 chain 99545 chr8 146364022 + 136701778 136703188 LTR12C 1709 - 0 1709 36896 84 1 0 362 0 5 30 68 13 97 3 1 5 1 0 131 0 278 60 1 0 116 2 1 51 9 11 83 0 43 36 0 1 9 0 1 5 5 30 35 19 10 158 1 15 38 chain 15591 chr8 146364022 + 136706762 136707097 THE1B 368 - 0 345 139611 56 5 6 65 7 15 12 105 106 85 chain 4744 chr8 146364022 + 136712183 136712289 L1PB1 5432 - 37 124 197979 4 1 0 21 1 0 24 2 0 14 1 0 4 19 5 15 chain 3126 chr8 146364022 + 136749334 136749541 THE1C 375 + 15 222 102911 207 chain 58960 chr8 146364022 + 136749568 136750404 L1PA8 5853 - 0 830 53420 92 2 1 18 1 0 35 51 49 50 2 0 40 9 8 474 8 9 54 chain 2280 chr8 146364022 + 136750862 136751013 THE1C 375 + 222 375 102911 25 0 1 40 4 6 55 1 0 26 chain 295722 chr8 146364022 + 136781089 136784822 HERVH-int 3825 - 0 3825 13661 224 8 10 253 8 218 39 9 11 418 1 2 139 0 1 485 0 10 299 12 33 241 0 1 660 0 3 13 0 2 8 0 1 54 3 2 42 1 0 7 21 18 13 1 0 14 28 0 24 1 0 10 1 0 37 126 0 533 chain 2193 chr8 146364022 + 136784062 136784089 HERVH-int 3825 - 3142 3169 210141 27 chain 6616 chr8 146364022 + 136784167 136784239 HERVH-int 3825 - 3292 3364 180334 72 chain 37522 chr8 146364022 + 136795841 136796339 MER1A 529 + 28 523 72790 370 0 1 43 31 27 54 chain 469617 chr8 146364022 + 136797144 136803433 L1PA8A 6298 - 9 6264 8045 85 5 0 7 3 0 14 2 0 5 0 10 139 1 0 181 6 7 351 4 1 29 0 2 85 3 0 159 1 2 4 1 0 48 4 11 322 3 2 19 1 15 346 15 17 378 2 0 178 0 1 352 1 0 45 0 1 53 3 0 20 12 12 842 35 37 365 1 0 133 10 11 378 8 6 390 1 0 31 0 4 47 3 4 26 0 3 66 0 1 72 5 6 455 1 0 76 1 0 3 1 0 10 3 2 16 2 0 73 8 0 14 21 20 22 40 32 5 1 0 9 1 0 7 2 1 13 7 4 17 2 0 9 2 1 4 1 0 15 2 1 9 1 0 15 2 0 5 13 9 21 3 0 21 21 10 11 1 0 16 1 0 6 chain 9548 chr8 146364022 + 136803865 136804051 L1PA10 4194 + 317 488 162843 20 2 0 19 1 0 6 2 1 11 23 10 11 7 9 84 chain 3020 chr8 146364022 + 136805926 136805958 LTR41 747 - 655 687 224611 32 chain 22890 chr8 146364022 + 136815913 136816208 L1PA4 6152 - 2 294 116141 4 1 0 5 2 0 138 11 11 134 chain 25925 chr8 146364022 + 136816847 136817212 THE1D 372 + 0 372 100318 128 1 5 33 14 22 11 5 0 173 chain 6228 chr8 146364022 + 136824496 136824591 MSTA 426 + 253 369 183334 34 8 29 53 chain 127416 chr8 146364022 + 136847855 136849370 L1PA7 6471 - 1 1520 28708 339 0 1 327 0 4 178 3 0 19 0 1 473 0 1 176 chain 536079 chr8 146364022 + 136859579 136865767 L1PA4 6152 - 0 6139 3435 774 0 1 22 0 3 2592 0 1 557 0 2 135 1 0 527 0 5 297 1 0 395 68 0 261 1 0 149 1 12 103 2 1 302 chain 563059 chr8 146364022 + 136888105 136894133 L1HS 6032 + 0 6032 266 255 2 1 108 0 1 2776 0 4 2887 chain 15820 chr8 146364022 + 136894640 136894985 THE1B 368 - 20 368 138895 36 7 6 47 1 0 10 95 99 32 2 0 5 5 8 105 chain 217738 chr8 146364022 + 136896140 136898535 L1PA3long 6157 - 1 2398 18018 778 1 0 1158 0 3 458 chain 15906 chr8 146364022 + 136898535 136898707 L1PA3long 6157 + 3580 3752 137809 172 chain 14782 chr8 146364022 + 136899615 136899938 MSTA 426 + 9 374 141993 57 49 73 67 4 0 10 0 26 8 41 17 21 9 29 57 chain 31717 chr8 146364022 + 136913760 136914307 L1PB1 5432 - 52 575 81303 33 3 1 14 8 5 10 11 4 18 7 4 10 1 0 44 2 1 15 2 1 53 2 0 9 17 12 12 6 9 11 15 13 244 chain 14317 chr8 146364022 + 136927820 136928125 L1PB1 5432 - 10 287 143505 18 1 0 13 1 0 20 2 1 26 2 0 12 9 6 18 23 12 16 1 0 35 9 8 15 4 3 51 2 0 9 2 0 3 2 0 11 chain 91800 chr8 146364022 + 136941825 136942972 MER11A 1151 - 0 1151 39030 59 16 22 208 5 2 54 2 1 504 8 6 86 1 3 111 1 3 92 chain 6514 chr8 146364022 + 136945877 136945955 MSTC 436 + 0 78 181129 78 chain 84638 chr8 146364022 + 136966795 136967697 L1HS 6032 + 5130 6032 41665 902 chain 30205 chr8 146364022 + 136971959 136972276 AluYb8 318 + 0 317 84176 317 chain 30069 chr8 146364022 + 136987185 136987538 L1P3 4156 - 56 411 84607 156 0 1 15 0 1 182 chain 47598 chr8 146364022 + 136990555 136991150 L1P3 4156 - 17 604 60764 24 16 13 103 4 1 50 0 1 378 3 0 17 chain 5416 chr8 146364022 + 137034757 137034934 MER20 218 + 38 204 190837 24 4 0 18 14 11 29 66 62 22 chain 79870 chr8 146364022 + 137046312 137047202 L1P1 4361 + 3418 4305 43653 265 1 0 38 1 0 430 1 0 154 chain 9088 chr8 146364022 + 137056436 137056537 L1PA5 6144 + 6043 6144 165128 101 chain 93434 chr8 146364022 + 137076040 137077121 L1PA6 6164 - 3 1094 38523 7 5 0 990 0 15 79 chain 24809 chr8 146364022 + 137120574 137120848 L1PA4 6152 - 15 289 105841 274 chain 23942 chr8 146364022 + 137121335 137121618 AluSc5 308 + 12 295 110672 283 chain 48992 chr8 146364022 + 137136099 137136797 L1PA8 5853 - 0 688 59758 93 8 7 12 3 2 37 2 1 6 0 1 5 1 0 8 12 11 62 2 0 36 0 3 5 4 0 253 3 0 146 chain 55525 chr8 146364022 + 137141315 137142103 LTR12 884 - 0 884 55401 175 1 0 227 39 19 63 0 22 77 37 66 14 0 66 155 chain 21019 chr8 146364022 + 137165785 137166151 THE1B 368 + 6 368 123849 105 0 3 6 3 0 49 54 49 87 23 24 39 chain 3968 chr8 146364022 + 137172569 137172614 MADE1 96 - 51 96 207866 45 chain 20929 chr8 146364022 + 137179840 137180111 L1PA7 6471 + 6174 6461 124178 9 0 1 154 5 20 103 chain 66216 chr8 146364022 + 137181920 137182680 L1PA5 6144 + 5383 6143 49996 613 1 0 121 6 7 19 chain 547443 chr8 146364022 + 137202444 137208465 L1PA2 6032 - 0 6032 1774 1471 0 1 330 0 4 909 0 1 116 0 9 57 3 0 2878 1 0 256 chain 19125 chr8 146364022 + 137217590 137217875 L1PA8 5853 + 5567 5847 129758 43 8 7 55 19 16 51 1 0 108 chain 28378 chr8 146364022 + 137238610 137238918 AluYg6 310 + 0 304 91669 126 4 0 178 chain 231603 chr8 146364022 + 137242636 137245646 L1PA8 5853 - 3 2991 17224 50 0 6 6 10 4 22 0 2 5 3 0 14 2 1 33 38 37 62 2 0 42 1 0 224 0 1 78 10 0 85 7 8 436 1 0 105 1 2 106 0 5 10 8 3 131 17 13 310 2 0 836 0 1 304 4 1 17 2 1 6 0 1 20 chain 36925 chr8 146364022 + 137257632 137258092 L1PB 1623 - 472 934 73626 13 0 1 295 0 1 152 chain 16001 chr8 146364022 + 137258640 137258988 L1PB1 5432 + 5108 5419 138345 9 5 0 17 1 0 11 4 3 8 2 0 3 2 0 8 2 0 53 32 30 30 1 0 16 14 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 29749 chr8 146364022 + 137263435 137263806 THE1C 375 - 0 375 85659 26 1 0 119 0 4 50 0 1 175 chain 16766 chr8 146364022 + 137278489 137278676 L1PA5 6144 - 4 191 136206 187 chain 33547 chr8 146364022 + 137296483 137296931 MLT2A2 560 - 88 552 78322 54 0 11 173 23 28 198 chain 17296 chr8 146364022 + 137304301 137304511 MSTA-int 1630 - 10 226 134796 94 0 1 4 0 5 112 chain 96421 chr8 146364022 + 137356729 137357794 L1PA3long 6157 + 5089 6157 37701 218 0 1 842 0 2 5 chain 5218 chr8 146364022 + 137363245 137363305 L1MC3 1789 + 1091 1151 192841 60 chain 6577 chr8 146364022 + 137386946 137387068 L1PB1 5432 - 10 124 180635 18 1 0 13 1 0 21 1 0 26 22 17 19 chain 12386 chr8 146364022 + 137392745 137393024 L1PB1 5432 + 5180 5430 150686 39 5 0 17 1 0 45 1 0 15 71 54 20 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 8153 chr8 146364022 + 137399123 137399268 THE1D 372 - 212 357 170210 30 0 1 19 34 33 62 chain 4689 chr8 146364022 + 137404771 137404825 L1PA8 5853 - 0 54 198649 54 chain 11080 chr8 146364022 + 137442275 137442617 L1PB1 5432 + 5114 5430 155893 24 1 0 6 1 0 12 28 22 34 8 7 18 1 0 8 3 0 31 5 4 16 3 0 7 32 29 13 2 0 21 38 35 25 1 0 4 chain 27749 chr8 146364022 + 137445767 137446148 L1MA2 4263 + 3681 4057 93869 75 4 3 47 3 0 63 0 1 88 1 0 8 10 9 82 chain 564176 chr8 146364022 + 137450317 137456345 L1HS 6032 - 1 6029 233 6028 chain 22192 chr8 146364022 + 137459332 137459687 THE1B 368 + 0 368 119387 44 0 15 22 29 30 58 1 0 23 4 0 94 0 2 13 0 1 4 8 6 44 1 2 10 chain 7794 chr8 146364022 + 137495994 137496154 Tigger2 2703 - 63 231 172341 35 41 48 42 1 2 41 chain 27427 chr8 146364022 + 137518677 137519031 THE1A 353 + 0 353 94884 107 17 16 230 chain 3477 chr8 146364022 + 137523638 137523685 MER53 195 - 23 69 215699 14 1 0 32 chain 119481 chr8 146364022 + 137534266 137535905 HERVL-int 5654 - 4146 5654 31225 260 0 4 153 0 1 80 0 1 91 0 1 316 139 0 29 0 1 100 4 2 430 0 2 37 chain 10836 chr8 146364022 + 137535168 137535296 HERVL-int 5654 + 1959 2087 156842 128 chain 4006 chr8 146364022 + 137535905 137535983 MLT2A1 477 - 0 70 207310 38 3 1 15 3 1 5 4 0 10 chain 55541 chr8 146364022 + 137542523 137543216 LTR12C 1709 - 973 1709 55394 290 1 0 57 8 51 36 9 0 15 0 9 14 0 1 263 chain 27007 chr8 146364022 + 137545827 137546156 THE1A 353 - 13 353 96259 230 2 1 65 0 12 32 chain 59366 chr8 146364022 + 137547985 137548745 MER4E1 777 + 0 771 53193 319 5 9 215 1 8 220 chain 3604 chr8 146364022 + 137553466 137553507 L1PB1 5432 - 223 264 213582 41 chain 22897 chr8 146364022 + 137574299 137574568 L1PA5 6144 + 5870 6141 116122 116 5 7 148 chain 13578 chr8 146364022 + 137582677 137582851 THE1C 375 + 0 375 146066 91 0 201 83 chain 29191 chr8 146364022 + 137587647 137587958 AluYa5 310 - 0 310 88092 184 1 0 126 chain 75070 chr8 146364022 + 137623866 137624708 L1PA5 6144 - 3 842 45985 20 1 0 47 2 0 772 chain 19113 chr8 146364022 + 137631104 137631456 LTR7 482 - 12 482 129783 33 17 18 110 0 2 46 8 40 10 7 17 11 0 51 17 15 14 42 13 36 23 chain 41479 chr8 146364022 + 137662028 137662556 L1PA6 6164 + 5637 6162 67312 243 0 3 120 22 22 129 6 0 8 chain 17110 chr8 146364022 + 137667775 137667961 L1PA2 6032 - 212 398 135281 186 chain 19470 chr8 146364022 + 137667961 137668167 L1PA2 6032 + 5826 6032 128754 206 chain 4180 chr8 146364022 + 137674994 137675123 L1MC1 2226 + 2074 2185 204822 9 4 0 16 7 5 18 1 0 6 35 24 33 chain 3612 chr8 146364022 + 137694518 137694585 L1MD2 1676 - 41 107 213452 28 13 12 26 chain 29486 chr8 146364022 + 137696797 137697106 AluYb8 318 - 9 318 86685 309 chain 26749 chr8 146364022 + 137703064 137703419 THE1B 368 + 0 368 97169 44 6 21 107 1 0 121 1 0 75 chain 16439 chr8 146364022 + 137706597 137706873 THE1B-int 1605 + 0 227 137097 12 9 10 99 50 0 106 chain 30163 chr8 146364022 + 137716829 137717144 AluYb8 318 + 0 315 84294 315 chain 23384 chr8 146364022 + 137719674 137719953 L1PA4 6152 - 9 291 113740 18 0 1 70 1 3 190 chain 89353 chr8 146364022 + 137760346 137761312 L1PA2 6032 - 0 966 39859 966 chain 45543 chr8 146364022 + 137761312 137761805 L1PA2 6032 + 4592 5085 62365 493 chain 155105 chr8 146364022 + 137773869 137775871 L1PA8 5853 - 0 2000 23966 93 1 0 18 3 2 32 1 0 15 66 64 21 3 1 43 1 0 319 0 1 229 7 5 633 0 1 42 1 0 191 2 3 82 0 4 145 0 2 54 chain 125714 chr8 146364022 + 137781495 137783056 THE1A-int 1579 - 6 1567 29183 110 0 1 86 1 0 892 1 0 58 0 1 413 chain 21751 chr8 146364022 + 137783068 137783357 THE1A 353 - 0 301 121205 181 0 11 37 1 3 11 1 0 58 chain 5692 chr8 146364022 + 137798670 137798747 L1MA5A 2387 + 2230 2306 188185 66 1 0 10 chain 98132 chr8 146364022 + 137805313 137806597 LTR12C 1709 - 1 1709 37242 62 1 0 28 0 131 184 1 3 72 25 23 87 3 1 7 1 0 102 0 3 22 0 278 97 3 4 44 0 3 88 4 6 162 1 11 50 0 1 224 1 0 15 chain 15180 chr8 146364022 + 137820152 137820316 L1PA3long 6157 + 5993 6157 140824 164 chain 11055 chr8 146364022 + 137845257 137845384 L1PA6 6164 + 6029 6156 155990 127 chain 134438 chr8 146364022 + 137856329 137858386 L1PB1 5432 + 3369 5427 27124 18 1 2 71 0 1 78 0 3 174 16 19 248 2 3 380 15 22 161 1 0 77 3 0 18 9 7 52 0 2 69 57 70 40 2 6 102 7 5 106 4 3 6 0 7 19 1 0 8 1 0 12 5 1 9 2 0 43 11 10 10 10 9 37 5 4 14 1 0 7 2 0 9 8 0 10 30 25 24 1 0 17 7 6 11 1 0 13 1 0 6 1 0 4 chain 31798 chr8 146364022 + 137868094 137868477 L1PA5 6144 + 5471 5872 81172 340 1 0 14 8 27 20 chain 197240 chr8 146364022 + 137868667 137870865 L1P1 4361 - 263 2473 19407 157 0 12 621 1 0 1199 0 1 220 chain 41273 chr8 146364022 + 137900949 137901417 L1PA4 6152 - 3 472 67569 5 0 1 463 chain 112785 chr8 146364022 + 137901883 137903141 L1PA3long 6157 - 8 1267 33448 362 1 2 895 chain 59124 chr8 146364022 + 137903143 137903794 L1PA3long 6157 + 4232 4883 53313 651 chain 9285 chr8 146364022 + 137920004 137920114 MER41-int 2638 - 415 525 164149 110 chain 41622 chr8 146364022 + 137920115 137920647 MER9a1 513 - 0 500 67130 150 32 0 350 chain 262025 chr8 146364022 + 137920667 137923942 HERVK9-int 4720 - 0 4684 15584 132 1 4 194 1 0 457 0 2 455 1 0 275 2 0 6 0 1 4 7 8 63 0 1 156 0 1392 223 0 1 378 1 8 51 0 9 374 0 1 250 0 1 4 2 1 103 5 4 30 2 1 7 1 0 50 0 2 14 13 9 13 chain 43725 chr8 146364022 + 137924581 137925094 MER9a1 513 - 0 513 64537 513 chain 102921 chr8 146364022 + 137929656 137930787 L1PA2 6032 - 0 1132 36015 872 0 1 259 chain 38313 chr8 146364022 + 137945159 137945978 MER41C 542 - 0 542 71693 210 0 21 109 1 0 4 0 1 59 304 4 30 0 1 53 0 1 49 chain 19359 chr8 146364022 + 137975232 137975500 L1P3 4156 - 20 284 129049 23 1 0 6 2 0 11 0 1 4 1 0 215 1 0 4 chain 4667 chr8 146364022 + 137996623 137996701 MLT2D 439 + 14 92 198894 24 6 7 43 1 0 4 chain 13213 chr8 146364022 + 138012338 138012659 L1PB1 5432 - 28 318 147417 13 1 0 21 1 0 18 1 0 6 2 0 14 1 0 5 3 1 18 16 6 6 2 0 8 10 9 34 8 7 17 2 1 52 2 0 9 7 3 12 3 2 8 1 0 20 chain 49629 chr8 146364022 + 138031464 138032023 LTR6B 557 - 0 557 59297 149 1 0 361 1 0 47 chain 23860 chr8 146364022 + 138035831 138036093 L1PA2 6032 + 5770 6032 111126 262 chain 19826 chr8 146364022 + 138038551 138038780 L1PA5 6144 + 5900 6128 127727 88 1 0 140 chain 551018 chr8 146364022 + 138047207 138053364 L1PA3long 6157 - 0 6157 1306 849 0 4 330 2 0 339 1 0 113 1 0 912 0 1 434 1 0 988 0 2 936 0 1 54 1 4 453 0 1 21 12 5 710 chain 26907 chr8 146364022 + 138059533 138059899 THE1D-int 1627 - 1255 1607 96603 132 0 3 209 17 0 8 chain 35649 chr8 146364022 + 138075907 138076332 L1PA7 6471 - 2 426 75339 11 2 0 321 1 2 90 chain 83854 chr8 146364022 + 138083097 138084068 L1PA4 6152 + 5174 6139 41966 310 7 0 333 0 1 321 chain 127318 chr8 146364022 + 138086634 138088200 L1PA6 6164 - 8 1597 28737 204 0 3 111 0 3 20 0 1 124 0 2 345 0 12 16 1 0 158 0 1 19 1 0 138 0 1 6 1 0 236 3 6 183 chain 45659 chr8 146364022 + 138113916 138114429 MER9a1 513 - 0 513 62345 513 chain 8085 chr8 146364022 + 138115454 138115557 MLT1B 390 - 18 120 170570 81 1 0 21 chain 9401 chr8 146364022 + 138117594 138117701 U6 107 + 0 107 163548 107 chain 7245 chr8 146364022 + 138127897 138128018 LTR12D 1347 - 662 757 175798 11 25 0 80 1 0 4 chain 5200 chr8 146364022 + 138129257 138129322 LTR24B 570 - 0 65 193022 65 chain 4774 chr8 146364022 + 138154837 138154908 MER49 923 + 7 76 197652 58 1 0 4 1 0 7 chain 4781 chr8 146364022 + 138189522 138189574 L1MCb 1641 + 805 857 197559 52 chain 22106 chr8 146364022 + 138200175 138200407 AluYa5 310 - 4 236 119755 232 chain 4974 chr8 146364022 + 138222415 138222472 MSTD 398 - 0 57 195428 57 chain 44530 chr8 146364022 + 138229843 138230533 PABL_B 668 + 0 616 63547 277 45 16 174 4 12 28 53 0 22 1 0 32 1 2 53 chain 12881 chr8 146364022 + 138239612 138239794 LTR27 711 - 499 700 148702 99 0 18 66 5 6 12 chain 350815 chr8 146364022 + 138254557 138258972 L1HS 6032 + 1811 6019 11574 267 0 2 184 0 4 811 1 0 575 170 0 529 1 0 973 0 4 694 68 22 40 26 27 76 chain 11849 chr8 146364022 + 138256400 138256527 L1HS 6032 + 5905 6032 152827 127 chain 4012 chr8 146364022 + 138264147 138264307 L1PB1 5432 + 5259 5399 207205 22 1 0 15 1 0 4 87 70 21 1 0 8 chain 69808 chr8 146364022 + 138269002 138269803 L1PA4 6152 - 11 804 48469 657 7 0 132 1 0 4 chain 31111 chr8 146364022 + 138292369 138292815 MER4A1 472 + 0 472 82323 210 1 2 10 15 0 8 8 45 59 0 2 111 1 2 23 chain 28828 chr8 146364022 + 138293562 138293940 MER48 407 + 4 407 89771 26 0 1 4 1 0 16 0 1 35 1 0 46 5 25 56 0 5 188 chain 185277 chr8 146364022 + 138294380 138297658 HERVH48-int 3304 + 187 3235 20473 13 2 0 26 2 0 31 14 1 20 26 19 65 6 2 8 1 0 68 1 0 14 6 0 10 11 5 83 1 0 7 3 1 38 12 0 13 0 3 12 70 42 55 12 10 43 1 0 30 1 0 42 42 45 115 6 3 10 1 0 21 1 0 13 2 0 33 8 3 11 10 8 7 1 0 16 1 0 22 2 0 24 1 0 16 2 0 5 16 9 123 1 0 10 1 0 10 4 3 172 0 1 42 10 9 80 2 1 125 0 1 4 1 0 149 0 1 6 8 7 97 0 1 143 1 0 18 3 1 69 2 1 11 1 0 45 5 4 227 1 0 4 1 0 18 1 0 44 1 0 4 2 1 10 2 1 29 1 0 4 5 4 10 45 27 9 1 0 9 92 72 25 23 14 26 13 5 9 1 0 23 2 0 5 1 0 45 1 0 3 2 0 68 62 47 69 2 0 11 75 53 16 chain 28926 chr8 146364022 + 138299680 138300052 MER48 407 + 16 407 89343 14 0 1 4 1 0 51 1 0 45 0 20 256 chain 22225 chr8 146364022 + 138323679 138323972 AluY 311 + 0 292 119231 31 7 0 101 0 1 63 7 12 84 chain 5168 chr8 146364022 + 138352111 138352170 L1PA3long 6157 + 6098 6157 193374 59 chain 8425 chr8 146364022 + 138360155 138360303 L1MA4 2864 - 694 839 168707 52 13 19 55 14 5 14 chain 68902 chr8 146364022 + 138361938 138363059 L1PA14 3548 - 63 1161 48856 20 1 0 9 6 0 42 1 0 16 1 0 11 14 11 31 18 13 111 1 0 84 1 0 6 2 0 7 18 14 105 2 0 7 5 3 42 7 5 9 3 1 16 4 3 122 15 19 90 1 0 82 0 1 66 13 16 29 5 9 98 chain 20663 chr8 146364022 + 138408699 138408978 L1P1 4361 + 4065 4341 125094 85 2 1 154 1 0 23 2 1 12 chain 20803 chr8 146364022 + 138419984 138420301 L1PA8 5853 - 6 316 124589 86 2 1 19 2 1 26 4 0 6 3 0 6 8 14 7 1 0 72 2 0 45 1 0 27 chain 306206 chr8 146364022 + 138422004 138425703 HERVH-int 3825 - 0 3804 13164 196 1 3 335 0 1 117 0 1 333 0 1 529 0 1 121 0 1 783 12 9 117 0 1 252 1 0 48 3 1 66 4 4 125 0 1 14 6 9 57 2 1 18 11 49 27 57 123 92 3 0 56 1 0 312 chain 83258 chr8 146364022 + 138426588 138427552 LTR5_Hs 974 - 0 970 42228 244 0 3 715 0 3 5 chain 3426 chr8 146364022 + 138428812 138428850 LTR19B 566 + 528 566 216650 38 chain 88769 chr8 146364022 + 138439233 138440301 L1PA7 6471 - 16 1083 40092 839 0 2 11 2 1 145 5 3 66 chain 38381 chr8 146364022 + 138473473 138473935 LTR2 463 - 0 463 71594 88 12 13 362 chain 4507 chr8 146364022 + 138555224 138555313 MADE1 96 - 0 96 200702 24 23 30 42 chain 548803 chr8 146364022 + 138570827 138576855 L1PA2 6032 - 4 6032 1602 842 0 4 774 3 0 216 0 1 562 0 1 494 3 0 2510 0 1 367 6 5 251 chain 22470 chr8 146364022 + 138603132 138603398 L1PA5 6144 + 5868 6135 118155 202 5 6 59 chain 25062 chr8 146364022 + 138613566 138613850 L1PA4 6152 + 5863 6152 104498 278 0 5 6 chain 5172 chr8 146364022 + 138622331 138622387 L1PA5 6144 + 5851 5907 193326 56 chain 23609 chr8 146364022 + 138627177 138627478 THE1A 353 - 0 299 112107 155 1 0 88 1 0 56 chain 114041 chr8 146364022 + 138627478 138628950 THE1A-int 1579 - 113 1579 33088 132 23 0 15 2 11 23 9 8 1097 0 2 26 0 7 145 chain 26435 chr8 146364022 + 138628961 138629304 THE1A 353 - 11 353 98286 140 1 0 92 2 1 24 9 10 75 chain 30922 chr8 146364022 + 138695550 138695889 L1PA3long 6157 + 5818 6157 82644 339 chain 81108 chr8 146364022 + 138706238 138707149 L1PA4 6152 - 9 928 43135 104 0 1 190 0 2 33 0 1 510 0 4 74 chain 36043 chr8 146364022 + 138722448 138722942 MER75 514 + 0 514 74842 105 24 25 186 0 1 7 0 18 172 chain 32671 chr8 146364022 + 138725848 138726299 MLT2A1 477 + 0 477 79730 140 0 1 29 4 1 10 0 1 22 0 1 77 0 1 98 12 3 19 3 37 37 chain 265106 chr8 146364022 + 138750988 138755133 L1PA7 6471 - 8 3296 15436 326 1 0 245 0 1 90 0 3 46 0 1 51 0 2 74 0 4 523 22 0 169 2 0 248 0 4 68 0 5 38 8 9 39 883 0 510 1 0 251 0 11 87 0 4 27 2 11 15 0 2 16 0 5 25 0 4 63 6 2 309 chain 64370 chr8 146364022 + 138752942 138753798 LTR12D 1347 + 405 1334 50855 131 0 31 42 4 8 53 0 42 96 11 12 119 0 1 76 11 7 26 1 0 33 1 0 252 chain 8346 chr8 146364022 + 138762918 138763009 L1PA2 6032 - 1 92 169142 91 chain 120076 chr8 146364022 + 138766502 138767924 LTR12C 1709 - 0 1709 31034 84 7 6 359 0 5 27 0 4 106 3 1 5 1 0 158 0 280 96 2 1 487 0 3 87 chain 3092 chr8 146364022 + 138779267 138779299 THE1D-int 1627 - 777 809 223079 32 chain 28140 chr8 146364022 + 138808742 138809037 AluYg6 310 + 1 296 92505 295 chain 28480 chr8 146364022 + 138817556 138817875 AluYb8 318 - 0 318 91269 34 3 2 282 chain 26203 chr8 146364022 + 138824878 138825187 L1PA7 6471 - 12 321 99185 309 chain 110719 chr8 146364022 + 138826003 138827282 L1PA4 6152 - 3703 4976 33937 691 0 1 198 14 7 376 chain 330135 chr8 146364022 + 138827282 138830955 L1PA4 6152 + 2470 6148 12199 233 0 5 3440 chain 47269 chr8 146364022 + 138834203 138834838 PRIMA4_LTR 623 - 0 621 60990 225 6 8 87 1 2 34 13 0 68 5 1 196 chain 3217 chr8 146364022 + 138836722 138836785 MLT1A 405 + 4 74 220621 13 15 22 35 chain 27314 chr8 146364022 + 138836889 138837285 LTR7 482 - 5 482 95226 110 1 2 39 0 10 19 0 31 30 11 12 109 8 46 69 chain 321764 chr8 146364022 + 138838545 138842407 HERVH-int 3825 - 0 3825 12530 800 1 2 21 4 0 554 1 0 444 0 4 106 0 8 4 1 0 96 2 0 357 1 0 266 1 0 5 0 1 167 0 1 209 0 1 13 0 2 8 0 1 26 51 9 23 1 0 26 59 68 13 4 0 10 1 0 10 1 0 38 5 0 199 1 0 333 chain 20728 chr8 146364022 + 138842426 138842760 LTR7 482 - 17 482 124865 141 0 10 17 41 73 70 14 103 51 chain 106936 chr8 146364022 + 138879366 138880739 THE1B-int 1605 + 213 1605 34995 213 0 25 523 0 1 198 1 0 267 4 5 40 7 0 120 chain 26636 chr8 146364022 + 138900839 138901194 THE1A 353 + 0 353 97526 110 1 0 62 1 0 5 0 1 24 1 0 151 chain 19741 chr8 146364022 + 138909168 138909375 AluYb8 318 - 7 214 127979 207 chain 19623 chr8 146364022 + 138917034 138917274 AluY 311 + 15 259 128324 113 1 5 126 chain 4062 chr8 146364022 + 138918637 138918778 L1MA4 2864 + 2677 2791 206450 15 54 32 14 4 0 3 2 0 25 1 0 15 0 2 8 chain 43505 chr8 146364022 + 138920705 138921216 MER9a2 513 + 0 513 64808 13 0 1 42 1 5 395 3 0 57 chain 107238 chr8 146364022 + 138924535 138926081 THE1B-int 1605 - 5 1605 34904 132 0 5 270 15 16 11 9 24 139 9 12 161 79 77 133 0 1 159 19 44 154 7 13 249 chain 16627 chr8 146364022 + 138932432 138932682 AluSg7 307 + 14 255 136596 38 16 12 59 1 0 8 0 1 57 2 0 5 3 0 61 chain 20752 chr8 146364022 + 138974511 138974874 THE1C 375 + 0 375 124784 138 98 110 127 chain 24770 chr8 146364022 + 138983198 138983483 L1PA7 6471 + 6182 6467 106059 285 chain 5034 chr8 146364022 + 138991517 138991582 L1MA3 4352 - 153 218 194785 65 chain 23881 chr8 146364022 + 138992252 138992550 AluSc5 308 + 0 299 111020 106 4 5 188 chain 24681 chr8 146364022 + 138998482 138998781 AluY 311 + 8 306 106543 122 1 0 176 chain 56342 chr8 146364022 + 139001299 139002011 LTR30 714 + 0 714 54940 115 0 1 494 12 14 71 1 0 19 chain 29187 chr8 146364022 + 139002631 139003152 HERV30-int 1034 + 137 562 88113 10 24 0 13 9 3 40 1 0 39 5 6 13 33 0 51 5 0 41 13 1 75 2 1 91 20 5 36 chain 21061 chr8 146364022 + 139016553 139016904 THE1B 368 - 0 368 123688 75 5 6 72 4 0 16 43 48 87 5 20 44 chain 127349 chr8 146364022 + 139033287 139034857 THE1A-int 1579 + 0 1570 28729 84 0 1 331 10 9 193 1 0 83 0 1 229 1 0 4 1 2 633 chain 53102 chr8 146364022 + 139049232 139049802 L1PA2 6032 + 5370 5940 56960 570 chain 539060 chr8 146364022 + 139054822 139060825 L1PA3long 6157 - 0 6155 2981 1793 0 8 108 1 0 981 3 0 873 0 4 1144 0 9 333 0 128 63 2 9 151 1 0 400 0 1 150 chain 108725 chr8 146364022 + 139060826 139066445 L1PA4 6152 - 324 2293 34501 164 4233 587 178 35 7 21 0 1 205 0 1 276 0 21 417 0 1 90 chain 29381 chr8 146364022 + 139060997 139061319 L1PA4 6152 + 5327 5649 87163 322 chain 95126 chr8 146364022 + 139066445 139067512 L1PA4 6152 + 5069 6141 38027 305 1 3 314 0 2 124 0 1 323 chain 49448 chr8 146364022 + 139094675 139095234 LTR6B 557 + 0 557 59426 50 1 0 358 1 0 149 chain 128510 chr8 146364022 + 139096196 139097938 LTR12C 1709 + 0 1709 28451 611 4 0 108 0 118 74 48 0 58 0 41 100 1 0 6 4 2 106 0 4 162 13 2 216 0 1 15 131 0 85 chain 3644 chr8 146364022 + 139096993 139097037 LTR12C 1709 + 1071 1116 116690 1 0 2 38 1 0 4 chain 544101 chr8 146364022 + 139128408 139134430 L1PA2 6032 + 2 6027 2198 254 1 0 108 0 1 4803 0 1 119 1 2 584 0 1 152 chain 36361 chr8 146364022 + 139135484 139135903 L1PA5 6144 - 13 433 74420 134 0 1 285 chain 23135 chr8 146364022 + 139161125 139161382 L1PA5 6144 + 5886 6143 114970 257 chain 524875 chr8 146364022 + 139165564 139171997 L1PA5 6144 + 0 6132 4697 120 0 14 837 0 1 197 9 0 264 1 0 1543 0 1 199 1 0 332 0 1 941 1 0 447 1 0 37 2 1 197 0 10 529 312 0 346 2 0 115 chain 34592 chr8 146364022 + 139176688 139177127 MER4A1 472 + 0 461 76765 15 0 2 8 1 0 205 4 25 206 chain 25676 chr8 146364022 + 139182460 139182764 AluSp 311 - 7 311 101383 304 chain 24118 chr8 146364022 + 139214097 139214383 AluSp 311 + 11 297 109645 286 chain 34952 chr8 146364022 + 139251407 139251801 L1PA5 6144 - 603 1001 76259 240 0 4 154 chain 53547 chr8 146364022 + 139251801 139252401 L1PA5 6144 + 5543 6144 56644 446 0 1 154 chain 117683 chr8 146364022 + 139257921 139259492 THE1C-int 1605 + 0 1589 31899 14 2 1 254 0 1 70 3 9 92 11 18 226 7 6 195 4 6 243 15 19 16 1 0 20 11 12 387 chain 80834 chr8 146364022 + 139286425 139287483 MER11C 1089 - 16 1089 43256 8 0 1 140 5 4 54 0 1 127 0 1 38 1 0 4 1 5 305 1 0 23 5 1 33 5 11 62 0 9 246 chain 2748 chr8 146364022 + 139304318 139304577 L1M3 994 + 69 319 229504 6 1 0 25 203 195 24 chain 11143 chr8 146364022 + 139304718 139304880 L1PREC2 3366 + 2573 2735 155658 106 2 1 36 3 4 15 chain 57430 chr8 146364022 + 139315139 139315843 L1PA8 5853 + 5155 5853 54274 409 1 0 44 2 0 71 1 0 14 3 2 45 2 1 112 chain 27658 chr8 146364022 + 139328467 139328765 AluYd8 298 + 0 298 94190 298 chain 9877 chr8 146364022 + 139340591 139340720 MER85 139 - 0 139 161184 38 2 12 89 chain 346189 chr8 146364022 + 139347665 139351502 L1PA4 6152 + 2302 6141 11723 198 0 1 3500 0 1 139 chain 19233 chr8 146364022 + 139358135 139358391 L1PA11 4918 + 4255 4507 129429 70 1 0 70 1 0 7 2 0 26 0 3 44 2 0 12 2 1 19 chain 16367 chr8 146364022 + 139367129 139367331 L1PA5 6144 - 24 226 137292 123 3 0 5 9 12 62 chain 33900 chr8 146364022 + 139367332 139367719 L1PA5 6144 + 5504 5891 77770 387 chain 87160 chr8 146364022 + 139385425 139386485 MER11C 1089 + 0 1063 40709 250 0 1 66 0 4 272 7 3 94 0 4 35 1 0 8 0 1 151 4 2 172 chain 26402 chr8 146364022 + 139405146 139405511 THE1B 368 - 0 368 98404 75 1 0 99 0 2 9 10 9 32 0 4 90 0 1 31 3 1 15 chain 90458 chr8 146364022 + 139417470 139418484 L1PA3long 6157 - 5 1025 39411 133 0 7 698 1 0 182 chain 151266 chr8 146364022 + 139418484 139420152 L1PA3long 6157 + 3476 5147 24437 681 0 3 987 chain 89483 chr8 146364022 + 139435588 139436657 MER11C 1089 - 10 1089 39810 192 0 1 293 0 1 17 2 0 6 4 6 167 0 3 25 1 0 117 0 1 20 0 5 225 chain 5423 chr8 146364022 + 139443723 139443791 MER58A 224 + 50 118 190782 68 chain 359735 chr8 146364022 + 139456016 139460061 L1PA5 6144 + 2101 6144 11366 267 0 1 807 1 0 2107 0 1 526 1 2 181 10 6 145 chain 6904 chr8 146364022 + 139499210 139499289 L1PA5 6144 - 0 79 178151 79 chain 31274 chr8 146364022 + 139530106 139530497 MLT2A1 477 - 79 475 82032 225 1 5 25 0 1 140 chain 15914 chr8 146364022 + 139549847 139550027 L1PA4 6152 + 5964 6143 138618 38 1 0 141 chain 5023 chr8 146364022 + 139568487 139568543 THE1D 372 + 316 372 194900 56 chain 15679 chr8 146364022 + 139582318 139582514 AluSg4 309 + 36 229 139336 95 3 0 98 chain 39458 chr8 146364022 + 139583638 139584177 MLT2A2 560 + 0 549 70076 180 1 0 10 19 18 47 0 1 123 1 2 4 1 0 22 0 11 131 chain 51904 chr8 146364022 + 139595252 139595869 L1PA6 6164 + 5539 6156 57682 465 1 8 6 7 0 138 chain 40597 chr8 146364022 + 139605125 139605625 L1PA8 5853 + 5359 5852 68446 205 1 0 44 2 0 71 1 0 14 1 0 47 2 1 22 1 0 89 chain 6736 chr8 146364022 + 139656684 139656778 MER72B 755 + 0 94 179428 46 1 0 22 0 3 5 2 0 18 chain 532646 chr8 146364022 + 139715905 139722035 L1PA5 6144 + 2 6139 3892 77 0 1 37 3 17 832 0 2 201 9 0 264 1 0 309 0 1 604 5 0 912 0 1 479 0 1 206 0 1 1347 1 0 19 0 1 491 0 1 333 chain 51643 chr8 146364022 + 139746785 139747425 L1PA8 5853 + 5211 5853 57867 267 8 17 69 2 1 43 2 0 70 2 1 11 1 0 54 1 0 16 1 0 93 chain 29152 chr8 146364022 + 139789701 139790098 L1PA8 5853 - 93 485 88306 19 2 1 52 2 1 8 2 1 69 3 1 44 1 0 190 0 1 5 chain 28359 chr8 146364022 + 139795500 139795931 MLT2A1 477 - 0 477 91734 8 0 4 26 21 54 13 10 14 157 1 2 19 0 1 8 3 0 100 0 2 48 2 6 15 chain 5766 chr8 146364022 + 139815633 139815693 5S 121 - 33 93 187467 60 chain 7564 chr8 146364022 + 139815693 139815776 L1PA2 6032 + 5948 6031 173770 83 chain 45580 chr8 146364022 + 139844083 139844620 MER41A 554 + 0 537 62431 537 chain 26237 chr8 146364022 + 139856913 139857211 AluY 311 + 2 301 99063 124 0 1 174 chain 3197 chr8 146364022 + 139867019 139867154 HAL1-2a_MD 234 - 89 177 221003 14 0 27 17 80 6 24 chain 24743 chr8 146364022 + 139893656 139893940 AluY 311 + 10 295 106206 122 0 1 162 chain 38380 chr8 146364022 + 139901519 139901948 L1PA3long 6157 + 5710 6141 71596 375 0 2 54 chain 19943 chr8 146364022 + 139946288 139946565 AluSq2 311 + 11 295 127322 9 11 0 28 0 17 45 1 2 183 chain 5192 chr8 146364022 + 139955675 139955735 MSTA 426 + 329 389 193123 60 chain 4293 chr8 146364022 + 139967081 139967180 MADE1 96 - 9 96 203321 32 28 0 7 2 18 30 chain 10621 chr8 146364022 + 139967204 139967361 MER4B 649 + 491 640 157727 6 7 0 65 1 0 17 0 1 53 1 0 7 chain 3954 chr8 146364022 + 139967855 139968007 LTR33A 529 + 17 187 208088 16 89 107 47 chain 42042 chr8 146364022 + 139973721 139974318 MER4A1_ 611 + 0 611 66573 43 0 1 80 2 4 82 3 0 47 17 0 15 0 23 82 1 6 77 0 2 134 1 2 13 chain 123830 chr8 146364022 + 140002415 140003983 THE1B-int 1605 - 5 1605 29758 256 0 1 341 1 0 6 0 1 350 6 7 179 1 27 61 0 1 328 1 2 22 4 6 12 chain 5301 chr8 146364022 + 140009380 140009538 MLT1D 503 - 72 233 192010 26 69 76 28 0 1 6 5 0 24 chain 34809 chr8 146364022 + 140019986 140020486 LTR3B_ 500 - 0 500 76458 25 21 20 44 1 0 6 11 12 31 0 1 58 1 0 141 7 7 4 0 1 150 chain 26772 chr8 146364022 + 140026368 140026721 THE1A 353 - 0 353 97077 38 1 2 203 2 1 109 chain 4186 chr8 146364022 + 140029200 140029249 MER33 330 - 76 125 204752 49 chain 22294 chr8 146364022 + 140037457 140037828 THE1D 372 + 7 372 118938 49 16 7 103 19 26 4 1 0 5 2 0 36 9 9 9 1 0 117 chain 35049 chr8 146364022 + 140066066 140066509 L1PA6 6164 - 5 459 76119 97 0 3 37 1 0 9 2 10 65 0 1 232 chain 9293 chr8 146364022 + 140068921 140069021 L1PA3long 6157 - 0 100 164098 100 chain 194479 chr8 146364022 + 140097819 140099949 L1PA3long 6157 + 4019 6157 19631 1878 0 8 252 chain 22519 chr8 146364022 + 140146177 140146470 L1PA7 6471 - 1 286 117944 8 4 0 31 14 10 236 chain 493939 chr8 146364022 + 140171751 140178374 L1PA7 6471 - 22 6466 7174 119 22 22 267 1 0 233 0 3 184 2 1 19 0 9 113 0 2 139 0 7 220 0 2 433 13 15 137 0 2 208 0 3 330 0 1 58 0 1 41 0 1 56 6 10 224 11 26 10 0 4 44 2 0 8 2 1 53 0 3 64 0 2 261 0 12 81 0 3 127 0 4 137 278 0 29 17 21 33 0 2 32 9 7 103 1 3 18 0 4 242 15 0 91 0 3 163 0 2 102 0 3 127 0 10 48 0 1 57 0 1 149 0 3 255 0 6 292 6 9 31 4 0 6 3 7 68 3 1 37 6 7 45 13 13 62 8 8 239 11 0 142 18 28 173 1 0 61 chain 34149 chr8 146364022 + 140189917 140190417 MER51C 639 + 121 619 77415 56 1 0 28 11 10 19 2 0 129 18 0 22 0 4 135 0 9 10 7 15 39 1 0 22 chain 23461 chr8 146364022 + 140211590 140211950 THE1A 353 + 0 353 113309 64 57 49 96 1 2 142 chain 44666 chr8 146364022 + 140215538 140216051 MER9a1 513 - 0 513 63416 513 chain 23674 chr8 146364022 + 140219918 140220280 THE1B 368 - 0 368 112183 73 6 0 103 2 0 17 25 24 96 9 24 31 chain 8766 chr8 146364022 + 140250341 140250440 L1PA5 6144 - 0 99 166839 99 chain 123986 chr8 146364022 + 140261705 140263231 THE1A-int 1579 + 0 1574 29708 145 2 0 14 2 0 109 0 3 145 2 1 259 4 2 462 0 56 34 4 0 147 1 2 48 1 0 147 chain 29153 chr8 146364022 + 140268384 140268688 AluYb9 318 + 0 304 88304 304 chain 23954 chr8 146364022 + 140291092 140291422 L1PA8 5853 + 5524 5847 110594 40 1 0 44 2 0 71 1 0 14 10 9 38 2 1 19 1 0 87 chain 24172 chr8 146364022 + 140310001 140310334 L1PA8 5853 + 5508 5853 109369 14 0 1 41 1 0 46 2 0 64 1 16 50 2 1 19 1 0 76 0 1 16 chain 23358 chr8 146364022 + 140337896 140338197 AluY 311 + 0 296 113881 123 0 3 6 19 11 153 chain 5806 chr8 146364022 + 140343028 140343119 L1MB1 2102 - 110 199 187080 50 10 8 31 chain 22700 chr8 146364022 + 140351727 140351971 L1PA2 6032 + 5788 6032 117075 244 chain 4901 chr8 146364022 + 140355272 140355607 MLT1B 390 + 9 374 196262 10 9 0 25 213 249 17 9 10 25 1 3 26 chain 28145 chr8 146364022 + 140370350 140370715 L1PA8 5853 + 5489 5847 92477 73 1 0 46 5 2 72 1 0 58 2 1 19 1 0 87 chain 35955 chr8 146364022 + 140380218 140380629 L1PA4 6152 + 5740 6151 74952 411 chain 23063 chr8 146364022 + 140385965 140386252 MER1A 529 + 242 529 115335 287 chain 15418 chr8 146364022 + 140433059 140433252 L1P5 443 + 243 437 140139 17 0 1 176 chain 5399 chr8 146364022 + 140439595 140439870 MER49 923 + 0 278 190991 29 196 199 50 chain 75647 chr8 146364022 + 140472148 140473116 LTR5_Hs 974 - 0 974 45688 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 109302 chr8 146364022 + 140473958 140475236 HERVK-int 6823 - 5572 6823 34369 233 1 0 314 1 0 18 1 0 26 2 0 204 1 0 306 12 0 17 15 12 21 1 0 38 1 0 20 1 0 23 1 0 3 1 0 11 1 0 5 chain 29270 chr8 146364022 + 140475269 140475579 AluYg6 310 + 0 310 87691 310 chain 5142 chr8 146364022 + 140523175 140523239 MLT2A2 560 + 30 94 193646 64 chain 243633 chr8 146364022 + 140559525 140562613 HERVE-int 4064 - 0 3153 16581 131 3 1 437 1 0 47 0 3 38 2 0 244 0 6 331 16 9 30 0 2 170 1 0 110 0 2 128 6 4 156 11 13 48 2 1 210 0 101 245 2 1 62 26 1 12 0 1 559 18 8 42 chain 7732 chr8 146364022 + 140563074 140563167 THE1D 372 - 40 133 172699 93 chain 3598 chr8 146364022 + 140680342 140680383 Tigger1 2417 + 2204 2245 213692 41 chain 63732 chr8 146364022 + 140697530 140698285 L1PA6 6164 - 2 754 51130 747 3 0 5 chain 41573 chr8 146364022 + 140698285 140698759 L1PA6 6164 + 4933 5407 67196 474 chain 4068 chr8 146364022 + 140791254 140791300 MADE1 96 - 50 96 206346 46 chain 6929 chr8 146364022 + 140811013 140811102 MLT1D 503 - 15 104 177970 89 chain 6080 chr8 146364022 + 140811312 140811393 MSTA 426 + 4 84 184570 39 2 1 40 chain 39397 chr8 146364022 + 140873351 140873892 LTR10A 586 - 16 586 70170 61 30 29 192 6 7 44 18 48 178 1 0 11 chain 25548 chr8 146364022 + 140878022 140878459 MER4E 760 - 0 430 102001 198 43 29 79 0 5 7 0 1 31 48 49 31 chain 10445 chr8 146364022 + 140902986 140903103 L1PA2 6032 + 5915 6032 158515 117 chain 19884 chr8 146364022 + 140923039 140923278 THE1B-int 1605 + 1361 1600 127538 239 chain 28627 chr8 146364022 + 140950926 140951227 AluYb8 318 - 17 318 90625 301 chain 21866 chr8 146364022 + 140986139 140986404 AluYf4 310 - 5 310 120769 38 0 41 10 4 3 213 chain 3701 chr8 146364022 + 140997155 140997198 MADE1 96 - 52 95 211923 43 chain 120192 chr8 146364022 + 141010109 141011490 L1PA6 6164 + 4781 6156 30986 622 0 1 599 10 0 18 0 3 132 chain 23934 chr8 146364022 + 141037744 141038107 THE1D 372 - 0 359 110721 138 0 3 5 18 28 10 12 0 56 0 4 73 9 0 42 chain 4162 chr8 146364022 + 141039685 141039732 L1PA3long 6157 + 6110 6157 205076 47 chain 14196 chr8 146364022 + 141046942 141047125 L1PA7 6471 - 1 182 143893 4 1 0 8 2 0 149 0 1 19 chain 3152 chr8 146364022 + 141156917 141156956 MIRb 242 + 76 115 221891 39 chain 74311 chr8 146364022 + 141170013 141170898 L1PA6 6164 + 5266 6159 46354 52 0 4 44 0 3 458 5 6 326 chain 39605 chr8 146364022 + 141214289 141214732 L1PA5 6144 + 5701 6144 69885 443 chain 3691 chr8 146364022 + 141282456 141282584 HAL1-2a_MD 234 - 181 234 212074 7 6 0 26 69 0 20 chain 115033 chr8 146364022 + 141302717 141303974 L1PA3long 6157 + 4899 6157 32781 439 0 1 818 chain 92929 chr8 146364022 + 141325351 141326531 MER4-int 2692 + 378 1597 38678 17 0 1 211 0 4 47 0 1 55 13 12 58 2 16 19 1 11 372 0 1 7 0 3 167 0 2 67 0 4 144 chain 14855 chr8 146364022 + 141328538 141328885 L1MA7 2200 - 132 447 141771 16 63 45 14 27 16 28 13 11 107 2 0 8 8 9 61 chain 11393 chr8 146364022 + 141338537 141338805 L1PB1 5432 + 5159 5420 154731 10 3 1 21 0 1 28 2 1 15 1 0 44 1 0 16 3 0 6 60 63 5 1 0 21 1 0 13 1 0 16 chain 6293 chr8 146364022 + 141361739 141361817 MER2 342 + 217 295 182857 78 chain 29749 chr8 146364022 + 141388311 141388728 MLT2A1 477 + 8 477 85661 123 9 29 11 5 1 7 0 1 14 0 1 190 3 37 55 chain 541116 chr8 146364022 + 141392262 141398483 L1PA5 6144 + 3 6144 2649 348 21 0 80 10 11 273 4 0 1218 0 2 183 0 1 273 8 0 777 0 2 72 0 1 869 0 2 894 61 4 494 0 1 259 0 1 222 5 0 139 0 4 11 chain 24435 chr8 146364022 + 141399055 141399346 AluSp 311 - 9 302 107883 22 1 3 268 chain 24040 chr8 146364022 + 141407976 141408349 THE1B 368 + 0 368 110117 13 2 0 34 0 1 16 1 3 41 15 16 45 30 24 101 1 0 74 chain 116737 chr8 146364022 + 141408392 141409932 THE1B-int 1605 + 45 1605 32215 153 31 8 25 7 6 195 0 25 8 0 2 103 0 1 4 1 0 38 0 13 115 4 5 143 6 5 458 0 1 65 9 10 158 0 2 17 chain 46896 chr8 146364022 + 141423622 141424129 L1PA3long 6157 - 11 518 61311 507 chain 154606 chr8 146364022 + 141426521 141428320 L1PA7 6471 + 4659 6470 24031 9 0 4 750 0 6 130 0 4 52 0 3 24 11 5 57 0 1 766 chain 23312 chr8 146364022 + 141486459 141486811 THE1A 353 - 0 353 114145 125 0 1 14 12 11 68 24 25 15 1 0 46 0 1 47 chain 126504 chr8 146364022 + 141486811 141488722 THE1A-int 1579 - 0 1579 28941 99 22 1 112 1 0 436 0 1 306 0 1 198 314 0 184 0 3 108 1 0 130 chain 24195 chr8 146364022 + 141491410 141491693 AluY 311 + 0 285 109241 37 4 1 55 0 5 187 chain 6486 chr8 146364022 + 141491718 141491790 L1PBa 3878 + 1279 1351 181351 72 chain 9444 chr8 146364022 + 141492814 141492929 L1PBa 3878 - 2414 2531 163342 15 0 2 100 chain 14433 chr8 146364022 + 141494076 141494293 L1PB 1623 + 1264 1453 143096 39 34 7 136 1 0 7 chain 43667 chr8 146364022 + 141494705 141495412 L1PB1 5432 + 4755 5427 64605 260 0 2 85 1 0 15 3 0 17 1 0 13 1 0 8 10 6 7 2 0 52 2 1 15 1 0 44 1 0 14 32 22 11 2 0 4 1 0 15 2 0 15 0 1 8 1 0 21 14 0 10 0 9 12 2 0 5 chain 125046 chr8 146364022 + 141499673 141501177 LTR12C 1709 - 0 1709 29379 364 7 9 108 0 4 9 2 1 96 4 2 4 1 0 35 0 1 186 0 200 110 17 18 125 0 1 436 chain 228146 chr8 146364022 + 141507581 141510077 L1PA3long 6157 - 8 2509 17406 251 1 0 377 0 1 206 0 4 1530 0 1 131 chain 2838 chr8 146364022 + 141528241 141528271 L1ME1 1623 - 358 388 228100 30 chain 22759 chr8 146364022 + 141606409 141606696 AluSp 311 + 10 291 116783 11 1 0 264 5 0 6 chain 24014 chr8 146364022 + 141649308 141649593 AluSc8 310 + 10 298 110251 122 0 3 163 chain 3192 chr8 146364022 + 141657803 141657836 AluJo 314 + 177 210 221071 33 chain 4035 chr8 146364022 + 141665135 141665179 U6 107 - 52 96 206840 44 chain 25100 chr8 146364022 + 141691588 141691883 AluY 311 + 0 290 104289 57 6 0 75 0 1 157 chain 8919 chr8 146364022 + 141691956 141692082 MER85 139 - 0 135 166039 23 1 0 7 5 15 90 chain 100921 chr8 146364022 + 141694592 141696159 L1PA15 4387 + 2801 4326 36530 82 11 12 34 5 8 148 36 0 17 0 2 62 7 6 490 0 2 51 19 23 75 20 14 60 2 0 46 1 0 77 2 1 9 1 5 79 9 10 16 1 0 55 1 0 23 38 33 14 18 15 44 3 1 11 chain 23432 chr8 146364022 + 141702454 141702751 AluSq10 312 + 21 298 113470 266 20 0 11 chain 38871 chr8 146364022 + 141784655 141785231 MER41B 635 + 25 615 70914 100 6 7 13 4 1 305 16 15 60 26 43 46 chain 24421 chr8 146364022 + 141860542 141860850 AluY 311 + 0 304 107962 123 7 3 178 chain 40186 chr8 146364022 + 141863293 141863763 L1PA5 6144 - 0 472 69055 11 1 3 458 chain 21083 chr8 146364022 + 141910844 141911155 L1MA4 2864 + 1194 1500 123612 14 32 28 105 2 0 108 8 9 42 chain 260317 chr8 146364022 + 141911754 141915275 L1PA7 6471 - 1 3184 15683 12 1 2 4 1 0 102 2 0 33 10 8 214 305 0 105 0 3 314 0 2 47 0 3 18 0 4 100 30 0 49 0 1 245 1 0 88 0 4 21 26 0 417 0 8 150 1 0 34 5 1 262 0 2 6 0 2 380 1 0 281 0 4 46 15 16 195 chain 64976 chr8 146364022 + 141915275 141916084 L1PA7 6471 + 2457 3275 50548 184 1 0 124 2 0 41 0 4 207 0 3 80 0 4 47 1 0 4 6 10 28 3 0 26 0 1 55 chain 29390 chr8 146364022 + 141939056 141939363 AluYa5 310 - 3 310 87119 307 chain 3094 chr8 146364022 + 141960811 141960849 Tigger2 2703 + 2610 2649 223041 15 0 1 23 chain 20206 chr8 146364022 + 141972631 141972888 AluY 311 + 16 293 126510 90 0 7 19 0 1 18 0 9 30 0 1 86 0 2 14 chain 20036 chr8 146364022 + 141987444 141987730 AluSc8 310 + 4 297 127023 128 22 26 119 3 6 14 chain 124078 chr8 146364022 + 141987963 141989356 L1PA4 6152 + 4749 6138 29676 85 4 0 467 1 0 390 0 2 205 1 0 240 chain 23522 chr8 146364022 + 141990434 141990743 AluY 311 + 0 302 113002 50 12 7 68 1 2 160 3 0 15 chain 3162 chr8 146364022 + 141991158 141991193 MER50 708 + 562 597 221705 35 chain 10354 chr8 146364022 + 142004466 142004606 Tigger1 2417 + 78 219 158891 22 7 8 111 chain 4489 chr8 146364022 + 142008049 142008138 Tigger1 2417 + 2242 2346 200919 9 2 0 11 5 8 10 1 11 40 0 4 11 chain 117707 chr8 146364022 + 142086604 142088117 LTR12C 1709 + 0 1709 31893 338 0 43 16 2 3 14 5 6 42 1 0 5 3 6 226 0 159 253 1 0 5 4 2 98 19 12 25 1 0 370 1 0 18 0 2 66 chain 5881 chr8 146364022 + 142101138 142101218 MER83B 357 - 20 104 186366 69 1 5 10 chain 27892 chr8 146364022 + 142101222 142101516 AluYa5 310 + 10 304 93390 294 chain 14118 chr8 146364022 + 142109875 142110104 MER30 238 - 0 238 144154 39 3 0 78 4 17 29 23 4 36 0 18 17 chain 5373 chr8 146364022 + 142115375 142115440 MER39B 650 + 0 65 191281 65 chain 11063 chr8 146364022 + 142153374 142153495 L1PA5 6144 - 2 123 155952 121 chain 24835 chr8 146364022 + 142159014 142159308 AluSp 311 - 16 311 105693 17 0 1 277 chain 141395 chr8 146364022 + 142211666 142213293 SVA_D 2077 - 17 2076 25922 610 0 1 4 0 1 21 0 49 22 0 1 4 0 2 10 0 205 32 0 1 4 0 2 42 0 1 12 1 4 29 0 1 15 1 3 30 1 38 18 0 40 18 0 40 173 0 40 551 1 7 28 chain 7684 chr8 146364022 + 142260388 142260489 MER47A 366 + 115 214 173024 58 2 0 41 chain 250577 chr8 146364022 + 142270707 142273473 L1PA4 6152 + 3371 6151 16205 625 0 3 679 0 7 616 0 3 180 0 1 666 chain 3385 chr8 146364022 + 142338128 142338179 MER58B 340 - 222 274 217376 9 0 1 4 1 0 31 0 1 6 chain 3953 chr8 146364022 + 142417616 142417662 MER30 238 + 34 80 208092 46 chain 21582 chr8 146364022 + 142494834 142495131 AluSc 308 + 8 288 121837 110 9 0 128 0 5 7 14 1 29 chain 3340 chr8 146364022 + 142508780 142508818 MADE1 96 + 2 40 218223 38 chain 3116 chr8 146364022 + 142534263 142534297 MIR 256 + 104 138 222608 34 chain 4274 chr8 146364022 + 142837423 142837518 HAL1-2a_MD 234 - 39 165 203562 20 4 50 13 12 0 17 3 0 26 chain 4126 chr8 146364022 + 142983134 142983186 MLT2A2 560 + 498 553 205572 6 0 3 46 chain 54630 chr8 146364022 + 142997667 142998276 L1PA4 6152 + 5534 6143 55951 609 chain 22594 chr8 146364022 + 142998928 142999220 AluSc8 310 + 1 306 117609 17 2 0 114 0 3 55 0 17 87 5 0 12 chain 64722 chr8 146364022 + 143148848 143149656 L1PA8 5853 + 5050 5853 50688 41 1 0 435 7 9 25 1 0 50 2 0 68 2 1 9 1 0 52 2 1 9 1 2 8 1 0 93 chain 33559 chr8 146364022 + 143156632 143156998 L1PA3long 6157 + 5776 6142 78309 366 chain 8076 chr8 146364022 + 143169890 143169990 MER85 139 + 6 109 170609 95 0 3 5 chain 24693 chr8 146364022 + 143218571 143218930 THE1C 375 - 0 362 106478 25 1 0 123 11 11 22 7 9 60 3 0 80 1 6 26 chain 3407 chr8 146364022 + 143301602 143301639 MIRb 242 - 109 146 216955 37 chain 11687 chr8 146364022 + 143393348 143393602 Tigger4a 237 - 0 236 153532 49 19 0 12 2 0 32 21 29 10 7 0 24 12 14 41 1 0 4 3 4 17 chain 4435 chr8 146364022 + 143417125 143417226 MER3 215 - 45 141 201515 7 6 0 28 21 22 39 chain 21855 chr8 146364022 + 143474023 143474322 AluSp 311 + 10 302 120800 69 7 1 177 0 9 22 10 0 14 chain 3337 chr8 146364022 + 143513679 143513743 HAL1-2a_MD 234 + 0 124 218296 15 3 0 5 0 6 13 2 59 26 chain 2430 chr8 146364022 + 143583259 143583415 HAL1-2a_MD 234 - 14 170 233961 19 61 1 16 44 104 16 chain 3986 chr8 146364022 + 143583760 143583821 HAL1-2a_MD 234 - 3 216 207608 37 1 149 16 0 4 7 chain 4215 chr8 146364022 + 143600929 143600993 HAL1-2a_MD 234 - 179 234 204373 21 3 0 12 6 0 22 chain 6803 chr8 146364022 + 143601571 143601948 HAL1-2a_MD 234 - 31 230 178934 20 5 58 29 3 0 11 77 0 25 161 21 15 11 0 20 chain 3669 chr8 146364022 + 143723114 143723327 LTR24B 570 - 88 324 212428 23 29 28 13 113 137 35 chain 37738 chr8 146364022 + 143723402 143723851 MER4A1 472 - 0 472 72501 226 0 21 209 0 2 14 chain 189441 chr8 146364022 + 143723859 143726725 MER4-int 2692 - 0 2616 20103 66 12 11 153 4 3 55 0 8 8 0 1 110 8 7 134 2 3 119 301 0 36 0 14 72 0 2 28 1 0 82 2 3 175 0 17 36 0 1 4 3 1 90 1 0 216 7 6 440 0 13 59 4 5 22 0 2 146 4 0 171 0 1 244 1 0 43 0 2 7 chain 125472 chr8 146364022 + 143729113 143731789 THE1B-int 1605 + 0 1605 29253 66 0 1 191 0 1 171 1 26 217 0 1 221 1099 0 710 chain 53768 chr8 146364022 + 143729991 143730666 THE1B-int 1605 + 909 1596 56495 58 0 1 74 6 4 292 4 15 132 0 2 109 chain 33334 chr8 146364022 + 143733604 143734134 MER4A1 472 - 0 472 78680 102 0 3 115 11 32 140 90 6 54 3 5 15 chain 3254 chr8 146364022 + 143752703 143752938 MLT1D 503 + 254 484 219916 36 173 171 18 3 0 5 chain 7621 chr8 146364022 + 143758153 143758253 LTR8 732 - 42 140 173399 41 2 0 57 chain 25112 chr8 146364022 + 143779849 143780254 MSTA 426 - 0 426 104213 113 0 11 53 18 16 20 11 17 15 5 4 18 10 16 35 4 5 103 chain 77636 chr8 146364022 + 143791195 143792192 LTR13 1007 - 0 1005 44677 31 3 0 5 12 15 43 0 5 95 13 14 112 3 1 300 4 5 303 2 5 71 chain 39463 chr8 146364022 + 143807144 143807626 MER9a3 513 + 0 513 70063 13 0 1 10 0 23 247 0 1 12 0 4 141 1 3 58 chain 14193 chr8 146364022 + 143810652 143810816 LTR10C 591 - 0 166 143904 81 0 2 83 chain 33187 chr8 146364022 + 143812466 143812917 HERVIP10FH-int 2884 - 2226 2675 78921 21 1 0 117 3 8 113 5 0 31 0 3 36 1 0 38 7 4 78 chain 47629 chr8 146364022 + 143814306 143814887 LTR10C 591 - 0 583 60748 81 0 2 213 0 3 144 3 0 140 chain 38369 chr8 146364022 + 143847061 143847878 LTR15 485 + 0 485 71616 29 333 0 178 0 1 250 0 1 21 1 0 5 chain 33333 chr8 146364022 + 143873435 143873805 L1PA4 6152 + 5781 6152 78681 82 0 1 288 chain 23919 chr8 146364022 + 143894390 143894700 THE1B 368 - 33 355 110819 143 2 0 24 1 0 109 0 15 31 chain 121606 chr8 146364022 + 143907787 143909237 SVA_B 1603 - 0 1603 30505 6 3 0 521 0 1 4 1 0 55 0 124 64 0 3 118 33 36 320 0 1 154 1 0 121 7 36 32 3 0 7 chain 73260 chr8 146364022 + 143910258 143911220 LTR5_Hs 974 + 0 974 46904 191 0 3 265 0 4 196 0 1 9 11 12 55 0 3 5 3 0 32 7 7 34 11 14 143 chain 5256 chr8 146364022 + 143912444 143912607 MER4D1 891 + 77 216 192449 25 72 46 39 7 9 20 chain 3329 chr8 146364022 + 143912696 143912731 MER49 923 + 679 714 218421 35 chain 24765 chr8 146364022 + 143923404 143923746 THE1C 375 + 5 363 106084 137 7 11 31 0 9 20 7 10 140 chain 513079 chr8 146364022 + 143931380 143937490 L1PA6 6164 + 0 6154 5877 63 1 2 306 35 42 87 11 10 280 0 17 156 1 0 355 0 1 4 1 0 142 0 4 259 1 0 562 8 12 23 0 1 870 0 1 69 0 4 24 1 7 402 1 0 5 3 0 950 0 1 230 2 5 402 0 4 15 1 0 695 2 0 5 6 7 132 chain 20524 chr8 146364022 + 143938192 143938412 SVA_D 2077 - 1825 2045 125558 220 chain 304137 chr8 146364022 + 143961578 143964924 L1PA3long 6157 + 2804 6157 13236 131 0 1 177 0 1 832 0 1 1297 0 1 579 1 0 278 0 4 51 chain 3376 chr8 146364022 + 143966786 143966827 MSTA 426 - 12 54 217546 36 0 1 5 chain 21570 chr8 146364022 + 143967239 143967650 MSTB 430 + 0 415 121881 83 2 3 33 30 35 21 0 1 21 46 52 95 6 7 32 10 0 32 chain 5685 chr8 146364022 + 143968868 143969005 MSTA 426 - 220 369 188242 45 53 65 39 chain 14327 chr8 146364022 + 143981823 143981995 L1PA5 6144 + 5973 6144 143468 23 0 1 138 2 0 9 chain 9014 chr8 146364022 + 144030273 144030384 MSTD 398 - 258 370 165522 79 0 1 32 chain 3584 chr8 146364022 + 144031376 144031515 HAL1-2a_MD 234 - 91 170 213942 13 11 5 20 51 0 21 1 4 7 6 0 9 chain 134733 chr8 146364022 + 144040714 144042296 LTR12C 1709 + 0 1708 27070 210 4 6 46 0 1 473 0 119 256 1 0 6 2 0 107 0 4 327 2 1 122 0 4 26 chain 104581 chr8 146364022 + 144044462 144047039 MER41-int 2638 + 1151 2634 35603 26 1 0 41 0 1 62 20 19 15 0 1 91 22 23 103 7 1 58 3 2 197 5 4 115 2 0 263 1088 0 53 3 5 210 30 31 162 chain 76133 chr8 146364022 + 144045521 144046581 MER11C 1089 - 25 1089 45401 144 1 0 54 0 1 127 0 1 38 1 0 5 0 4 20 0 1 67 81 70 147 1 0 58 6 10 62 0 9 144 10 8 94 chain 40872 chr8 146364022 + 144047050 144047904 MER41A 554 + 0 554 68060 343 1 0 54 8 12 16 311 8 121 chain 36757 chr8 146364022 + 144049353 144049863 LTR10G 522 - 0 519 73867 73 8 5 87 14 17 119 4 11 59 0 3 110 1 0 35 chain 31151 chr8 146364022 + 144062485 144062845 L1PA5 6144 - 12 373 82255 142 0 1 218 chain 4650 chr8 146364022 + 144073520 144073602 MER31A 484 - 365 448 199063 32 18 19 32 chain 25157 chr8 146364022 + 144080837 144081137 AluSq10 312 - 12 312 103974 300 chain 86880 chr8 146364022 + 144082189 144083176 LTR5B 1012 + 0 1012 40832 100 0 2 615 0 18 20 0 1 183 0 4 69 chain 186634 chr8 146364022 + 144084770 144088832 L1PA13 3608 - 120 3522 20367 22 1 0 17 3 1 5 2 0 24 0 1 22 14 11 50 1 0 62 2 0 32 9 13 69 1 0 168 0 1 41 3 4 47 1369 729 172 1 3 95 3 4 167 0 1 673 6 8 40 0 1 169 0 3 202 2 0 51 0 5 43 1 0 16 2 0 15 3 1 19 1 0 18 6 3 7 1 0 8 2 0 12 6 5 15 1 0 26 25 33 63 7 5 42 2 6 19 32 18 24 3 0 14 1 0 25 5 2 23 6 4 19 1 0 4 chain 12414 chr8 146364022 + 144093955 144094133 MER4C 627 + 3 156 150579 81 25 0 72 chain 90121 chr8 146364022 + 144122155 144123228 MER11C 1089 - 0 1078 39603 11 2 1 478 26 27 342 0 5 214 chain 86111 chr8 146364022 + 144139552 144140556 LTR13 1007 - 0 1007 41114 318 0 2 301 0 1 385 chain 81713 chr8 146364022 + 144141270 144142228 LTR13_ 950 + 0 950 42884 167 0 1 177 0 1 261 14 4 339 chain 21430 chr8 146364022 + 144179487 144179735 AluY 311 + 57 306 122406 75 0 1 173 chain 26820 chr8 146364022 + 144181080 144181432 THE1B 368 - 0 366 96911 200 2 0 65 0 1 38 5 20 42 chain 14365 chr8 146364022 + 144187389 144187575 L1PA8A 6298 + 6079 6268 143328 14 6 9 166 chain 3937 chr8 146364022 + 144189682 144189727 LTR47A 437 - 36 81 208316 45 chain 14075 chr8 146364022 + 144201122 144201282 L1PA4 6152 + 5990 6151 144306 153 0 1 7 chain 45594 chr8 146364022 + 144225278 144225871 LTR71B 605 + 0 605 62410 112 22 35 263 5 4 191 chain 21989 chr8 146364022 + 144246711 144246989 AluY 311 + 6 301 120270 127 2 1 123 0 18 26 chain 26923 chr8 146364022 + 144274022 144274374 THE1B 368 - 0 362 96539 150 4 0 49 1 0 113 1 16 34 chain 88486 chr8 146364022 + 144276893 144277948 HERVL-int 5654 + 4564 5654 40190 39 4 25 20 0 5 104 0 6 852 0 3 36 chain 8463 chr8 146364022 + 144278059 144278216 MLT2A2 560 + 227 498 168498 66 11 120 29 18 23 33 chain 20452 chr8 146364022 + 144282234 144282504 AluSp 311 + 10 298 125748 34 6 24 230 chain 3884 chr8 146364022 + 144366675 144366716 Tigger4a 237 + 191 232 209124 41 chain 75691 chr8 146364022 + 144369459 144370421 LTR5_Hs 974 - 0 974 45658 77 0 6 17 23 21 19 8 15 163 1 0 188 0 1 177 1 2 288 chain 78418 chr8 146364022 + 144396853 144397846 LTR13 1007 + 0 1006 44310 11 14 15 45 3 6 149 0 5 150 4 5 298 1 15 268 21 10 29 chain 6161 chr8 146364022 + 144536170 144536242 Tigger7 736 + 37 109 183882 72 chain 14766 chr8 146364022 + 144624279 144624492 7SK 245 + 0 245 142042 131 1 2 23 22 53 36 chain 34073 chr8 146364022 + 144627856 144628297 LTR10F 562 + 0 562 77511 76 0 5 35 0 115 99 0 1 231 chain 2893 chr8 146364022 + 144629086 144629117 MER41B 635 - 91 122 227157 31 chain 37397 chr8 146364022 + 144629744 144630509 LTR2C 499 + 3 468 72956 188 302 1 235 8 9 32 chain 7816 chr8 146364022 + 144667060 144667152 MLT1D-int 1367 + 1163 1255 172212 92 chain 26549 chr8 146364022 + 144708659 144708965 AluYf4 310 - 6 310 97846 178 2 0 126 chain 29196 chr8 146364022 + 144723624 144723934 AluYa5 310 - 0 310 88068 310 chain 20692 chr8 146364022 + 144740946 144741211 AluSp 311 - 46 311 124992 114 3 0 6 9 12 133 chain 6636 chr8 146364022 + 144752336 144752443 MSTA 426 - 318 426 180196 48 19 20 40 chain 277569 chr8 146364022 + 144757637 144761671 Harlequin-int 5206 + 1675 5101 14771 167 1 2 15 1 2 18 0 1 170 0 2 310 0 1 978 0 1 132 9 6 332 318 10 143 0 2 208 311 0 324 0 4 32 0 8 7 10 1 290 8 9 93 0 1 157 chain 27371 chr8 146364022 + 144761671 144761986 AluY 311 + 1 311 95043 125 5 0 185 chain 34834 chr8 146364022 + 144762111 144762557 LTR2 463 + 0 463 76429 188 0 15 159 12 13 59 1 2 27 chain 31810 chr8 146364022 + 144763152 144763619 LTR3A 482 - 0 482 81150 39 0 1 52 0 1 123 2 0 8 66 78 35 0 1 28 0 1 5 0 1 109 chain 5869 chr8 146364022 + 144765147 144765228 MER4D1 891 - 229 490 186496 70 0 180 11 chain 78541 chr8 146364022 + 144765284 144766210 LTR13A 966 + 12 966 44247 487 0 5 113 11 34 315 chain 28266 chr8 146364022 + 144775453 144775764 AluYb8 318 - 15 318 92057 180 8 0 123 chain 15781 chr8 146364022 + 144781347 144781538 AluSg7 307 - 104 296 139015 65 6 7 120 chain 23971 chr8 146364022 + 144832162 144832458 AluSp 311 - 0 302 110500 129 3 9 164 chain 25240 chr8 146364022 + 144832667 144836253 L1M4c 1769 - 27 1688 103531 12 1 0 40 306 0 40 10 8 38 778 352 25 10 9 29 13 16 80 1062 384 54 758 313 21 2 0 4 0 1 55 6 5 51 55 16 17 93 64 12 0 1 14 chain 23404 chr8 146364022 + 144840358 144840649 AluSp 311 + 6 298 113623 169 1 2 121 chain 12832 chr8 146364022 + 144843678 144843878 AluJo 314 + 21 233 148918 103 23 36 55 1 0 18 chain 11076 chr8 146364022 + 144844338 144844478 AluSq2 311 + 141 283 155912 47 3 5 90 chain 27714 chr8 146364022 + 144858209 144858527 AluYb8 318 + 0 318 93991 318 chain 82993 chr8 146364022 + 144863456 144864621 L1PA14 3548 - 102 1252 42339 32 1 0 16 1 0 5 1 0 13 2 0 39 5 1 8 1 0 110 2 1 84 1 0 6 2 0 17 9 5 42 7 14 47 12 8 45 16 15 37 17 12 100 0 4 97 1 0 152 1 0 83 1 5 152 chain 75265 chr8 146364022 + 144914158 144915127 LTR5_Hs 974 + 0 974 45887 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 18 1 0 85 chain 81416 chr8 146364022 + 144926030 144926995 LTR13 1007 + 38 1006 43006 35 2 0 14 5 6 287 5 6 429 0 1 109 0 2 79 chain 73459 chr8 146364022 + 144931880 144932834 LTR5_Hs 974 - 0 974 46809 77 0 6 20 20 18 22 0 7 72 8 0 7 0 8 81 1 0 188 0 1 181 0 1 118 1 0 25 1 2 12 5 13 115 chain 5768 chr8 146364022 + 144971380 144971474 L1MB7 1623 - 703 791 187451 50 15 9 29 chain 21431 chr8 146364022 + 144974993 144975256 AluY 311 + 24 301 122399 108 0 1 105 14 27 36 chain 24056 chr8 146364022 + 145034175 145034451 AluSp 311 + 7 283 110009 276 chain 3567 chr8 146364022 + 145055438 145056186 HAL1-2a_MD 234 - 121 234 214188 29 602 38 24 51 0 15 20 0 7 chain 2028 chr8 146364022 + 145055473 145055494 HAL1-2a_MD 234 - 210 231 238377 21 chain 24583 chr8 146364022 + 145056355 145056647 AluY 311 + 0 288 107069 125 6 2 161 chain 62244 chr8 146364022 + 145092008 145092734 SVA_D 2077 + 1049 2075 51782 56 0 4 7 0 299 292 1 2 20 0 10 325 14 0 11 chain 25687 chr8 146364022 + 145092749 145093042 AluYf5 307 + 0 296 101347 16 0 1 158 0 2 119 chain 22949 chr8 146364022 + 145116060 145117109 MER41A 554 + 0 554 115868 154 726 224 23 0 1 25 0 1 40 3 8 78 chain 42014 chr8 146364022 + 145143303 145143904 LTR10E 629 - 0 629 66605 7 1 0 27 32 34 12 0 2 155 1 14 24 2 1 54 1 0 133 0 2 90 0 13 45 1 0 16 chain 36443 chr8 146364022 + 145147980 145148856 LTR10E 629 + 1 628 74308 15 1 0 95 276 6 12 0 3 26 19 16 60 37 63 73 7 6 184 29 27 35 1 0 6 chain 22045 chr8 146364022 + 145148114 145148367 L1PA5 6144 - 0 257 120045 81 0 3 65 0 1 107 chain 25752 chr8 146364022 + 145155743 145156037 AluSp 311 - 15 311 101075 31 0 2 263 chain 3189 chr8 146364022 + 145172463 145172498 MER39 703 - 380 415 221126 35 chain 23350 chr8 146364022 + 145182426 145182708 AluSp 311 + 5 289 113918 171 0 1 104 0 1 7 chain 3895 chr8 146364022 + 145188867 145188911 MER53 195 - 0 44 208931 44 chain 84405 chr8 146364022 + 145200617 145201617 LTR5A 1029 + 0 1029 41754 134 0 13 428 4 8 182 9 11 10 0 6 54 0 4 179 chain 2727 chr8 146364022 + 145265834 145265870 L1MB3 1562 - 84 119 229774 10 1 0 25 chain 5227 chr8 146364022 + 145268700 145268764 MER53 195 + 131 195 192758 64 chain 16321 chr8 146364022 + 145283143 145283371 Tigger1 2417 - 109 334 137436 57 1 0 43 2 0 20 6 7 52 1 0 46 chain 54806 chr8 146364022 + 145285710 145286299 SVA_D 2077 - 0 587 55835 18 2 0 569 chain 3895 chr8 146364022 + 145434075 145434119 MER53 195 - 0 44 208930 44 chain 84619 chr8 146364022 + 145445825 145446825 LTR5A 1029 + 0 1029 41678 134 0 13 428 4 8 182 9 11 10 0 6 54 0 4 179 chain 25455 chr8 146364022 + 145587658 145587951 AluYk4 311 - 18 311 102435 293 chain 83525 chr8 146364022 + 145589001 145589964 LTR13A 966 + 0 966 42109 499 0 5 267 2 0 195 chain 3422 chr8 146364022 + 145612246 145612285 MER58A 224 + 51 90 216734 39 chain 20162 chr8 146364022 + 145613313 145613572 AluSg 306 + 36 296 126633 105 2 0 7 3 6 142 chain 21227 chr8 146364022 + 145614736 145615019 AluSc 308 - 13 298 123117 60 19 21 204 chain 82356 chr8 146364022 + 145792442 145793446 LTR13 1007 + 0 1007 42605 68 2 0 313 7 8 4 1 0 4 0 1 285 0 2 130 0 1 138 0 2 19 2 1 31 chain 244805 chr8 146364022 + 145796085 145798994 L1PA6 6164 + 3221 6159 16514 482 1 0 74 4 6 116 7 0 5 0 2 111 8 5 335 0 8 132 0 2 104 0 4 705 0 4 91 0 3 114 2 21 143 2 1 80 4 0 62 0 1 327 chain 24515 chr8 146364022 + 145804310 145804613 AluY 311 + 0 310 107468 46 5 11 69 0 1 183 chain 21946 chr8 146364022 + 145828814 145829089 AluSx3 311 + 22 300 120438 110 0 1 144 1 3 20 chain 2802 chr8 146364022 + 145856192 145856245 MLT1A1 405 + 305 341 228715 29 17 0 7 chain 26203 chr8 146364022 + 145865637 145866007 THE1B 368 + 0 368 99187 13 2 0 23 1 6 130 2 1 24 1 0 91 2 0 13 0 1 4 8 6 56 chain 130345 chr8 146364022 + 145874127 145876806 L1PREC2 3366 + 959 2738 28008 9 0 1 6 2 1 184 7 8 37 2 1 64 4 6 34 1 0 69 606 0 104 293 0 288 10 6 79 1 0 4 0 1 152 10 11 82 1 2 16 1 2 32 0 5 185 9 0 9 0 4 26 1 0 9 1 0 322 0 1 19 chain 23357 chr8 146364022 + 145874554 145874840 AluY 311 + 8 288 113886 56 1 2 65 7 0 157 chain 7245 chr8 146364022 + 145880010 145880918 MER52C 1267 + 348 1056 175799 45 680 550 35 1 0 13 103 34 31 chain 127240 chr8 146364022 + 145890250 145891807 THE1A-int 1579 + 0 1579 28757 12 0 3 149 0 2 26 0 3 68 2 0 727 0 13 186 0 2 69 0 1 318 chain 86621 chr8 146364022 + 145900720 145902304 LTR12D 1347 - 0 1347 40916 91 0 33 141 1 0 27 309 0 7 1 0 17 38 11 285 0 41 126 128 32 131 5 14 55 1 38 25 0 71 143 0 6 53 chain 6125 chr8 146364022 + 145900980 145901055 LTR12D 1347 - 190 265 158822 75 chain 2630 chr8 146364022 + 145901057 145901087 LTR12D 1347 - 266 296 231280 30 chain 5973 chr8 146364022 + 145901123 145901190 LTR12D 1347 - 327 394 185492 67 chain 2111 chr8 146364022 + 145901267 145901289 LTR12D 1347 - 168 190 209817 22 chain 44984 chr8 146364022 + 145916786 145917388 LTR71B 605 - 0 605 63072 446 51 54 105 chain 47904 chr8 146364022 + 145920900 145921457 LTR6B 557 - 0 557 60553 455 0 2 54 2 0 46 chain 25353 chr8 146364022 + 145962931 145963247 AluY 311 + 0 307 102930 41 4 0 84 4 5 110 6 0 67 chain 77057 chr8 146364022 + 145985146 145986200 MER11C 1089 + 0 1073 44939 246 0 9 58 0 4 69 1 0 12 0 2 132 84 83 54 0 1 18 0 4 7 1 0 38 0 1 126 1 2 54 1 0 144 0 1 8 chain 23441 chr8 146364022 + 145991838 145992135 AluYk4 311 + 0 295 113427 12 14 15 105 1 0 149 2 0 14 chain 44098 chr8 146364022 + 146004286 146004980 LTR14B 630 + 22 630 64090 149 83 0 57 0 1 65 0 25 72 0 9 24 44 6 200 chain 76972 chr8 146364022 + 146021278 146022246 LTR5_Hs 974 + 0 974 44988 285 0 1 181 0 1 188 1 0 163 8 15 19 20 18 103 chain 31809 chr8 146364022 + 146038749 146040169 L1MA4 2864 + 1160 1980 81153 29 33 38 114 2 0 6 0 1 5 43 42 42 0 5 24 820 205 46 19 12 143 1 4 20 1 12 72 chain 25766 chr8 146364022 + 146041383 146041684 AluSp 311 + 0 304 101020 91 0 3 210 chain 15958 chr8 146364022 + 146084978 146085222 LTR46-int 301 - 39 288 138493 107 7 9 84 24 27 22 chain 30455 chr8 146364022 + 146094219 146096435 HERVL-int 5654 + 0 2509 45041 345 1404 1692 153 0 5 314 chain 55366 chr8 146364022 + 146094934 146095615 LTR13 1007 + 0 683 55480 73 2 0 8 0 2 13 1 2 283 8 9 293 chain 45166 chr8 146364022 + 146096435 146096948 MER9a2 513 + 0 513 62858 513 chain 77217 chr8 146364022 + 146098282 146099198 HERVK9-int 4720 + 54 966 44860 4 1 0 66 1 0 8 1 0 26 6 5 794 1 0 4 0 1 4 chain 8452 chr8 146364022 + 146099198 146099813 HERVL-int 5654 + 5340 5654 45041 17 1 2 21 305 0 30 0 2 17 1 2 223 chain 21811 chr8 146364022 + 146099813 146100095 MLT2A1 477 + 0 288 120979 142 0 1 25 1 5 35 0 2 66 1 0 12 chain 120553 chr8 146364022 + 146100382 146101985 LTR12C 1709 + 0 1709 30855 24 0 9 245 17 18 42 18 61 65 8 7 366 1 0 193 0 88 90 51 20 7 1 0 384 7 6 84 chain 45619 chr8 146364022 + 146122948 146123468 MER9a2 513 - 0 513 62384 392 6 0 108 1 0 13 chain 64418 chr8 146364022 + 146136985 146138458 THE1B-int 1605 + 0 1605 50834 14 0 12 52 0 1 184 5 0 162 652 773 377 0 2 22 0 1 5 chain 25614 chr8 146364022 + 146138470 146138824 THE1B 368 + 12 368 101656 42 8 12 103 7 6 22 1 0 171 chain 18928 chr8 146364022 + 146141388 146141703 AluY 311 + 0 303 130294 48 5 9 66 45 20 93 0 22 37 13 0 8 chain 24751 chr8 146364022 + 146148663 146148958 AluY 311 + 14 310 106161 112 0 1 183 chain 85829 chr8 146364022 + 146174832 146175832 LTR5B 1012 + 0 1012 41221 101 0 2 142 0 1 426 0 2 77 2 0 174 0 8 45 0 1 33 chain 95903 chr8 146364022 + 146177502 146179302 L1PB1 5432 - 22 1373 37844 6 1 0 13 1 0 21 1 0 24 17 14 5 2 0 16 31 12 19 1 0 38 10 9 12 2 1 53 2 0 8 5 1 12 1 0 8 1 0 24 1 0 1 92 0 11 1 0 158 15 5 135 0 1 98 0 2 50 319 0 30 0 2 129 7 12 175 0 2 244 chain 308969 chr8 146364022 + 146180966 146184972 HERVH-int 3825 - 0 3825 13048 225 0 2 583 1 0 42 165 0 57 14 11 152 4 5 87 0 3 559 8 13 306 0 1 309 1 0 13 0 2 24 9 0 82 0 1 122 15 0 232 1 0 8 1 0 83 0 1 123 1 0 50 1 0 5 0 1 10 2 22 35 14 11 14 3 0 13 2 1 12 8 2 13 4 0 10 2 1 9 1 0 24 0 1 6 2 1 3 1 0 535 chain 30214 chr8 146364022 + 146184988 146185384 LTR7 482 - 14 482 84143 84 0 2 76 0 1 8 0 31 17 1 0 24 0 1 109 8 46 69 chain 145973 chr8 146364022 + 146185907 146189143 L1PBa 3878 - 134 2244 25174 6 2 0 22 3 2 18 0 1 224 977 0 166 0 1 18 0 1 63 7 0 67 5 197 147 285 0 101 7 4 96 0 1 258 1 2 84 2 0 327 4 7 107 51 5 37 3 0 148 chain 78078 chr8 146364022 + 146186188 146187148 LTR13A 966 - 0 955 44476 100 13 15 84 1 0 276 9 1 6 1 0 327 0 3 143 chain 35019 chr8 146364022 + 146192192 146192639 LTR2 463 + 0 463 76162 55 0 3 69 0 3 24 3 8 41 0 1 211 0 4 44 chain 10025 chr8 146364022 + 146205982 146206272 L1MB1 2102 + 1782 2061 160453 5 2 0 69 47 49 15 6 1 14 18 16 35 38 35 17 1 0 23 chain 15249 chr8 146364022 + 146208979 146209170 MER47A 366 - 66 262 140635 36 0 3 109 0 2 46 chain 332105 chr8 146364022 + 146210665 146216029 L1PA8 5853 - 0 5802 12125 71 5 10 11 2 1 60 13 12 6 1 0 73 2 0 45 1 0 90 2 1 291 218 1230 250 0 11 48 0 2 132 1 4 120 3 0 19 0 1 144 1 0 92 16 21 28 7 11 110 1 4 72 0 1 100 0 5 151 8 12 125 1 5 97 7 68 17 345 5 13 6 10 227 7 9 15 17 0 466 277 8 469 0 1 175 8 4 239 5 0 245 13 15 93 22 10 13 0 3 47 0 1 4 1 0 119 50 16 13 1 0 10 2 0 21 chain 527223 chr8 146364022 + 146239227 146245344 L1PA5 6144 - 4 6144 4476 10 0 1 1378 0 2 127 1 0 277 0 4 592 3 2 424 1 0 56 0 5 65 0 1 38 1 0 379 0 4 154 0 1 263 0 1 260 0 1 648 1 0 113 5 12 66 0 1 1255 chain 87267 chr8 146364022 + 146246629 146247645 LTR5A 1029 - 0 1029 40662 882 0 13 134 chain 222134 chr8 146364022 + 146248405 146251737 HERVK-int 6823 - 226 3403 17751 11 5 0 10 15 9 4 1 0 17 34 25 13 1 0 4 1 0 29 5 3 7 1 0 8 44 32 9 5 0 31 2 0 11 1 0 3 1 0 13 1 0 12 2 0 10 203 119 17 1 0 11 17 11 23 1 0 7 2 0 34 2 1 10 0 1 21 37 31 19 0 1 24 1 0 124 1 0 34 1 0 101 1 0 22 1 0 198 7 6 7 1 0 48 9 4 263 0 1 730 9 13 849 1 0 4 0 1 166 0 1 14 chain 86600 chr8 146364022 + 146253209 146254213 LTR5A 1029 - 0 1017 40929 882 0 13 122 chain 6217 chr8 146364022 + 146256661 146257039 HERVK14C-int 762 + 563 759 183440 5 2 0 50 4 3 13 119 45 8 1 0 10 1 0 21 121 18 23 chain 48411 chr8 146364022 + 146257546 146258105 LTR14C 587 + 0 587 60169 228 0 28 331 chain 60607 chr8 146364022 + 146258111 146258832 HERV9-int 5642 + 4101 4824 52518 306 1 2 389 0 1 25 chain 65128 chr8 146364022 + 146259236 146259954 L1PA3long 6157 + 5430 6149 50514 393 0 1 325 chain 16522 chr8 146364022 + 146261260 146261529 LTR12F 595 + 0 409 136853 91 4 17 4 1 0 34 1 0 4 1 0 15 5 71 51 11 75 47 chain 16239 chr8 146364022 + 146263011 146263328 L1PB1 5432 + 5138 5427 137653 8 1 0 12 5 1 9 2 0 51 1 0 60 2 1 10 31 18 19 2 0 5 1 0 14 2 0 24 1 0 22 0 3 9 1 0 18 2 0 5 chain 3264 chr8 146364022 + 146266587 146266641 LOR1a 498 + 19 75 219695 18 5 7 31 chain 75813 chr8 146364022 + 146280511 146281504 LTR13 1007 + 0 1007 45590 73 2 0 237 0 3 68 4 5 78 1 3 63 0 4 117 0 2 41 1 5 116 6 7 153 2 1 31 chain 79023 chr8 146364022 + 146291185 146292186 LTR13 1007 + 0 1007 44049 73 2 0 307 5 6 242 2 1 62 0 8 113 0 1 162 2 1 31 chain 40943 chr8 146364022 + 146294751 146295237 LTR2C 499 - 0 493 67984 311 1 4 61 1 5 112 chain 19524 chr8 146364022 + 146297517 146297760 L1PA6 6164 - 14 258 128584 68 0 1 175 chain 26631 chr8 146364022 + 146302305 146302600 L1PA3long 6157 - 4 299 97556 295 chain 121890 chr8 146364022 + 146302600 146304022 L1P1 4361 - 482 1921 30419 586 0 10 375 0 1 214 0 5 7 0 1 240 chain 42703 chr9 141213431 + 33316 33824 L1PA6 6164 - 2 512 65771 10 0 1 4 0 1 494 chain 5065 chr9 141213431 + 33830 33891 L1P1 4361 + 2962 3023 194477 61 chain 88716 chr9 141213431 + 82899 83901 SVA_E 1901 - 0 1898 40101 449 0 1 109 0 511 14 1 0 12 0 389 91 3 0 180 1 0 142 chain 333705 chr9 141213431 + 124588 129079 L1PB1 5432 - 13 5370 12061 23 0 7 19 1 0 24 2 0 14 1 0 5 6 5 25 14 1 12 8 7 41 1 0 15 3 1 53 2 0 9 5 1 11 1 0 8 1 0 24 7 0 8 0 3 202 0 2 93 2 1 173 4 7 64 8 7 129 0 6 258 0 6 91 1 0 67 2 832 41 0 1 84 1 4 193 2 1 65 0 4 108 0 1 78 0 3 86 8 0 34 0 9 15 0 11 48 0 4 81 46 48 53 0 6 102 1 0 52 0 1 254 1 3 370 13 1 111 0 1 35 0 8 16 0 1 193 0 9 100 0 2 383 13 11 27 0 7 94 1 0 268 1 0 76 chain 9744 chr9 141213431 + 129905 130057 Tigger3c 601 - 81 228 161876 92 4 0 16 16 15 24 chain 546441 chr9 141213431 + 139654 145708 L1PA3long 6157 + 4 6156 1892 148 10 11 613 0 128 122 1 0 58 27 0 2107 1 0 2465 1 0 496 1 0 4 chain 5835 chr9 141213431 + 165553 165645 MER20 218 + 30 126 186810 44 6 12 5 2 0 35 chain 21039 chr9 141213431 + 173905 174161 AluY 311 + 40 297 123765 86 0 1 170 chain 21301 chr9 141213431 + 188461 188784 THE1B 368 - 0 368 122858 18 5 26 81 35 45 30 1 0 112 1 16 40 chain 22769 chr9 141213431 + 190360 190691 THE1B 368 - 12 368 116730 116 32 42 23 4 3 97 0 1 15 0 15 44 chain 35355 chr9 141213431 + 197304 197950 L1MA3 4352 - 85 712 75723 12 8 6 19 18 14 28 0 1 43 70 52 9 0 1 19 6 8 139 2 3 54 12 10 137 13 15 57 chain 30345 chr9 141213431 + 200131 200448 AluYb8 318 + 0 317 83783 317 chain 22046 chr9 141213431 + 201077 201385 THE1C 375 - 50 375 120039 37 0 9 154 3 0 9 1 2 31 10 19 40 0 1 23 chain 23670 chr9 141213431 + 213731 214025 AluSc 308 - 11 308 112199 18 0 1 41 1 2 77 0 1 26 1 0 8 0 1 122 chain 13579 chr9 141213431 + 221341 221529 MER2 342 + 35 221 146058 34 0 2 8 7 2 28 0 1 111 chain 547306 chr9 141213431 + 229905 236050 L1PA4 6152 - 0 6151 1794 335 1 2 60 0 3 1166 0 1 130 0 3 228 0 1 120 0 2 1957 1 2 1562 1 0 120 6 0 211 0 1 247 chain 25190 chr9 141213431 + 264944 265231 AluSq10 312 - 25 312 103799 287 chain 12556 chr9 141213431 + 283591 283751 L1PB4 2604 - 54 214 150017 160 chain 28879 chr9 141213431 + 303193 303589 L1PA16 3655 + 3150 3538 89547 51 1 0 89 2 0 139 8 3 106 chain 7136 chr9 141213431 + 386641 386798 MER5A 189 - 22 189 176501 33 22 24 14 22 21 32 0 9 34 chain 36271 chr9 141213431 + 409581 410002 L1PA5 6144 - 4 455 74532 10 6 0 169 0 36 236 chain 5023 chr9 141213431 + 410002 410058 L1PA5 6144 + 5645 5701 194891 56 chain 14869 chr9 141213431 + 454270 454484 MER44A 345 + 85 323 141722 14 1 3 50 5 28 73 1 0 70 chain 23798 chr9 141213431 + 467888 468173 AluY 311 + 9 289 111485 121 6 0 131 0 1 27 chain 23048 chr9 141213431 + 475512 475844 MER4E1 777 + 0 350 115408 23 1 0 7 0 2 93 6 10 20 6 13 143 1 3 13 0 4 19 chain 3882 chr9 141213431 + 489401 489448 MER53 195 - 34 81 209138 47 chain 10471 chr9 141213431 + 500006 500142 MER34 540 - 344 487 158380 11 0 7 125 chain 25315 chr9 141213431 + 508126 508425 AluSp 311 - 0 300 103143 122 0 1 177 chain 4651 chr9 141213431 + 535889 535973 MLT1D-int 1367 - 1266 1348 199056 22 11 12 43 3 0 5 chain 29518 chr9 141213431 + 554448 554838 MER75 514 - 0 407 86568 16 0 3 106 2 13 86 0 3 180 chain 6855 chr9 141213431 + 558840 558922 U6 107 + 15 99 178540 64 0 2 18 chain 29941 chr9 141213431 + 562037 562351 AluYb8 318 - 4 318 84991 314 chain 54195 chr9 141213431 + 576863 577571 LTR12 884 - 0 884 56237 206 0 107 194 2 0 31 5 6 22 5 46 43 0 25 32 0 4 168 chain 87298 chr9 141213431 + 579965 581312 LTR12C 1709 - 0 1709 40644 84 15 14 70 1 0 73 23 0 53 3 7 131 1 2 38 24 0 9 8 391 536 1 0 9 109 107 101 6 23 31 1 10 20 chain 9896 chr9 141213431 + 604844 604962 THE1D 372 + 254 372 161090 118 chain 27329 chr9 141213431 + 608036 608320 AluYb8 318 - 18 302 95176 284 chain 20579 chr9 141213431 + 630282 630544 AluY 311 + 9 276 125364 33 0 1 12 13 17 204 chain 73293 chr9 141213431 + 661144 662025 L1PA5 6144 - 18 899 46889 125 7 0 10 3 10 736 chain 3825 chr9 141213431 + 695821 695862 MIR 256 - 192 233 209994 41 chain 24320 chr9 141213431 + 696010 696299 AluY 311 + 0 298 108543 44 8 16 72 0 1 165 chain 29775 chr9 141213431 + 728511 729091 MER4D1 891 + 334 884 85567 98 1 5 47 38 6 174 35 37 23 26 16 65 50 56 23 chain 3872 chr9 141213431 + 736271 736314 MER2 342 - 167 210 209269 43 chain 49146 chr9 141213431 + 764722 765441 MER4E1 777 + 18 777 59636 135 0 3 43 3 7 65 0 2 60 0 19 43 0 1 37 0 1 20 0 1 5 1 0 42 13 19 15 39 30 130 0 13 68 chain 455198 chr9 141213431 + 767073 772861 L1PA8 5853 + 51 5853 8571 21 2 0 10 1 0 13 49 13 66 1 2 129 0 4 41 0 3 153 0 1 84 5 9 22 0 4 157 0 3 93 1 4 201 0 2 114 6 11 145 1 4 192 0 5 352 30 4 99 8 6 110 0 3 143 0 4 578 6 8 17 3 1 240 0 4 20 3 6 128 0 1 161 0 3 151 0 2 64 0 5 22 0 2 197 1 9 44 0 1 64 1 0 151 0 3 55 2 1 36 1 0 118 9 7 288 0 1 222 0 3 96 0 4 16 0 2 75 0 2 295 2 1 12 0 2 166 1 0 41 7 5 70 2 1 9 1 0 52 2 1 20 6 8 84 chain 1923 chr9 141213431 + 768933 768960 L1PA8 5853 + 1915 1942 229057 27 chain 72072 chr9 141213431 + 779736 780777 MER11C 1089 + 0 1063 47447 179 2 1 67 7 16 43 0 2 5 2 4 69 1 0 148 64 70 79 8 12 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 9715 chr9 141213431 + 799881 800139 MER2 342 + 29 294 162008 50 58 56 74 49 58 27 chain 26173 chr9 141213431 + 831550 831845 AluY 311 + 5 299 99308 128 1 0 166 chain 42061 chr9 141213431 + 857634 858104 L1PA4 6152 - 7 477 66544 470 chain 122482 chr9 141213431 + 861059 862493 SVA_B 1603 - 0 1562 30228 154 7 0 273 0 4 140 3 0 38 2 5 69 0 42 10 0 40 53 2 0 9 0 6 35 0 40 608 0 5 31 chain 3626 chr9 141213431 + 912951 912991 MER58A 224 + 56 96 213233 40 chain 3003 chr9 141213431 + 922198 922234 MER5C 305 + 200 236 224973 36 chain 4296 chr9 141213431 + 937870 937929 L1MB4 1306 - 786 843 203268 33 2 0 24 chain 11025 chr9 141213431 + 987074 987407 L1MB3 1562 - 7 319 156110 16 30 34 45 114 90 19 1 0 72 7 8 4 1 0 24 chain 2986 chr9 141213431 + 1001104 1001139 MER53 195 + 112 147 225328 35 chain 247721 chr9 141213431 + 1066172 1069527 L1PA7 6471 - 12 3047 16369 137 31 32 673 0 3 399 5 4 256 1 0 283 0 4 180 1 2 4 1 0 341 1 2 348 6 0 27 3 0 6 0 3 151 0 2 29 322 0 76 8 7 66 chain 33300 chr9 141213431 + 1093543 1093977 Tigger2b_Pri 1066 + 574 1019 78730 161 8 19 229 0 1 4 1 0 31 chain 34406 chr9 141213431 + 1104955 1105880 MLT2A1 477 - 0 466 77047 54 9 0 11 456 13 14 4 0 215 5 2 157 chain 140567 chr9 141213431 + 1106034 1108164 L1PA13 3608 - 122 2051 26059 20 1 0 16 10 6 48 8 5 29 1 0 28 9 8 54 2 0 91 22 21 24 1 0 4 1 0 150 0 1 83 1 2 62 0 1 406 42 22 189 170 0 234 0 4 58 42 38 15 0 1 213 0 1 21 1 0 74 chain 11100 chr9 141213431 + 1107363 1107495 L1PA5 6144 - 5 136 155804 104 1 0 27 chain 113803 chr9 141213431 + 1108179 1109981 L1PA8 5853 - 0 1498 33146 27 0 11 19 1 3 21 13 12 19 3 2 51 7 4 5 1 0 71 2 0 42 7 6 482 2 1 54 319 12 656 chain 2652 chr9 141213431 + 1113365 1113436 MIR 256 - 133 212 230990 16 31 39 24 chain 3913 chr9 141213431 + 1118763 1118810 MER91C 135 - 20 67 208654 47 chain 131955 chr9 141213431 + 1133235 1134746 L1PA5 6144 - 12 1588 27643 326 0 1 40 0 59 405 0 4 333 0 1 264 0 1 76 8 7 59 chain 25991 chr9 141213431 + 1137011 1137286 AluYa5 310 - 0 275 100049 275 chain 25257 chr9 141213431 + 1141372 1141684 AluY 311 + 0 307 103431 128 2 0 5 5 2 172 chain 312434 chr9 141213431 + 1146464 1150348 L1PA5 6144 + 2553 6138 12916 617 1 0 16 309 0 69 0 1 110 0 1 307 0 3 672 0 4 1029 0 1 422 0 1 332 chain 148599 chr9 141213431 + 1185909 1187741 L1P1 4361 - 2523 4357 24806 552 1 2 47 9 9 70 0 1 283 0 14 738 21 7 111 chain 539034 chr9 141213431 + 1189822 1196260 L1PA4 6152 - 12 6150 2985 6 1 0 137 0 1 997 0 1 333 0 1 529 0 1 248 1 0 514 0 1 108 0 1 59 312 0 20 1 0 870 2 0 1041 0 1 321 0 4 333 0 6 605 chain 115028 chr9 141213431 + 1209555 1210891 L1PA5 6144 + 4826 6141 32782 1272 25 4 39 chain 555532 chr9 141213431 + 1223884 1229900 L1PA2 6032 + 3 6030 770 154 0 11 5312 0 1 399 1 0 150 chain 28625 chr9 141213431 + 1245429 1245754 L1PA5 6144 + 5803 6128 90629 325 chain 88273 chr9 141213431 + 1338041 1338982 L1HS 6032 - 10 951 40270 941 chain 42800 chr9 141213431 + 1375772 1376372 MER41B 635 - 21 620 65658 103 1 2 41 23 22 89 1 0 228 1 2 35 1 0 77 chain 6773 chr9 141213431 + 1389693 1389858 L1PA15 4387 - 73 227 179161 32 29 24 41 2 1 12 10 6 10 5 4 24 chain 461227 chr9 141213431 + 1393703 1399507 L1PA8 5853 + 50 5853 8355 21 7 0 11 66 26 92 0 1 98 10 14 466 0 3 357 0 5 383 0 1 50 0 22 6 0 1 35 13 14 88 0 1 336 1 2 557 29 0 161 0 1 286 4 25 15 0 1 127 0 1 266 5 6 359 0 8 118 0 1 89 0 1 103 0 1 6 7 5 444 5 6 98 1 0 241 2 0 557 1 0 38 5 4 20 0 8 42 2 1 61 2 1 19 1 0 93 chain 243879 chr9 141213431 + 1407326 1410353 L1PA3long 6157 - 0 2712 16571 786 318 0 15 0 1 1838 0 2 70 chain 29410 chr9 141213431 + 1408120 1408430 AluYa5 310 - 0 310 87017 310 chain 50533 chr9 141213431 + 1410353 1410911 L1PA3long 6157 + 2859 3417 58630 558 chain 248357 chr9 141213431 + 1421925 1424869 L1PA4 6152 - 0 6152 16344 6 0 5 161 1 2 683 0 1 180 0 15 275 0 3162 1416 0 10 80 0 14 142 chain 27029 chr9 141213431 + 1443766 1444138 THE1C 375 - 0 375 96189 26 1 0 100 6 7 57 1 0 38 3 7 140 chain 33988 chr9 141213431 + 1452233 1452654 L1PA10 4194 - 44 465 77631 34 3 0 121 4 5 47 0 1 38 0 1 174 chain 21372 chr9 141213431 + 1487756 1488020 THE1B-int 1605 - 1341 1605 122614 264 chain 20608 chr9 141213431 + 1488031 1488354 THE1B 368 - 11 360 125266 114 35 45 24 7 6 48 0 1 5 0 1 58 0 15 32 chain 22578 chr9 141213431 + 1500382 1500649 L1PA4 6152 - 1 279 117681 7 0 1 7 0 3 135 0 7 118 chain 5897 chr9 141213431 + 1504534 1504603 L1MB5 1630 + 1396 1465 186207 69 chain 8818 chr9 141213431 + 1513707 1513831 MER85 139 - 0 125 166565 34 8 9 82 chain 10592 chr9 141213431 + 1516957 1517091 THE1C 375 + 242 375 157862 108 1 0 25 chain 14641 chr9 141213431 + 1539498 1539679 MER4E1 777 - 13 651 142455 92 0 457 89 chain 23063 chr9 141213431 + 1539679 1539965 LTR13A 966 + 0 288 115337 85 1 0 65 0 3 135 chain 532595 chr9 141213431 + 1558434 1564566 L1PA4 6152 + 3 6152 3898 577 1 0 489 2 1 10 0 3 161 1 0 611 0 1 924 0 4 361 0 1 532 5 6 450 0 1 170 1 0 46 0 4 942 0 5 736 0 1 113 chain 538603 chr9 141213431 + 1569027 1575045 L1PA3long 6157 - 8 6157 3052 640 1 0 383 0 1 3633 0 1 421 1 2 164 0 128 623 0 1 152 chain 23950 chr9 141213431 + 1582544 1582892 L1PA7 6471 - 3 355 110623 9 5 0 8 1 2 14 0 2 107 14 21 28 1 0 161 chain 507463 chr9 141213431 + 1583450 1589502 L1PA5 6144 - 0 6143 6368 11 3 1 132 1 8 222 0 2 525 0 1 358 1 0 7 0 1 193 2 1 9 0 23 301 0 2 1100 0 3 644 2 1 56 1 31 198 0 1 4 1 0 470 0 5 663 9 0 59 16 21 670 0 3 5 3 0 224 18 30 24 1 15 119 chain 33746 chr9 141213431 + 1592810 1593273 L1PA8 5853 - 6 459 78025 87 1 0 19 2 1 31 17 16 14 1 0 69 2 0 46 2 1 42 3 0 127 chain 19300 chr9 141213431 + 1623157 1623434 THE1D-int 1627 - 1234 1515 129245 128 32 33 79 0 3 38 chain 6512 chr9 141213431 + 1626773 1626973 L1MD2 1676 + 958 1155 181142 15 99 97 67 1 0 18 chain 65589 chr9 141213431 + 1628487 1629262 L1PA6 6164 + 5379 6154 50299 169 0 1 426 2 1 178 chain 3093 chr9 141213431 + 1629350 1629398 L1MC1 2226 + 2083 2128 223045 23 2 0 15 1 0 7 chain 20402 chr9 141213431 + 1633595 1633882 L1PA15 4387 - 292 575 125890 70 16 15 77 1 0 43 2 0 78 chain 2983 chr9 141213431 + 1651562 1651593 MIR 256 - 196 227 225381 31 chain 32979 chr9 141213431 + 1666886 1667366 Charlie3 2679 + 2220 2674 79251 239 4 0 133 43 20 12 0 1 49 chain 3222 chr9 141213431 + 1689311 1689349 Zaphod 902 + 299 337 220548 38 chain 210375 chr9 141213431 + 1692241 1694555 L1PA3long 6157 + 3837 6157 18480 456 0 2 1009 0 4 849 chain 52933 chr9 141213431 + 1706584 1707288 MER4E 760 + 51 752 57061 119 14 11 51 1 0 137 15 17 45 2 1 320 chain 543245 chr9 141213431 + 1749540 1755665 L1PA3long 6157 + 5 6155 2305 977 1 0 1344 2 1 57 0 1 6 0 3 390 2 1 678 0 22 34 4 0 1786 0 3 174 0 3 413 1 0 115 3 4 138 chain 6024 chr9 141213431 + 1758408 1758480 L1PA8 5853 + 5781 5853 185029 72 chain 21606 chr9 141213431 + 1760691 1760935 L1PA2 6032 - 409 653 121748 244 chain 38128 chr9 141213431 + 1760935 1761354 L1PA2 6032 + 5613 6032 71943 419 chain 39264 chr9 141213431 + 1764099 1764553 L1PA7 6471 - 792 1246 70253 51 0 1 6 1 0 396 chain 65793 chr9 141213431 + 1764553 1765340 L1PA7 6471 + 5680 6469 50198 22 0 1 592 0 2 23 0 1 138 2 0 10 chain 28235 chr9 141213431 + 1778171 1778469 AluYa5 310 - 12 310 92175 298 chain 452382 chr9 141213431 + 1778485 1783616 L1PA4 6152 - 18 6146 8680 104 4 0 2759 0 4 15 3 0 1835 0 4 318 0 996 93 chain 83734 chr9 141213431 + 1805333 1806286 L1PA5 6144 - 13 973 42023 4 0 1 124 0 6 825 chain 28420 chr9 141213431 + 1809271 1809573 AluYa5 310 + 0 301 91500 123 1 0 178 chain 242148 chr9 141213431 + 1820139 1823160 L1PA7 6471 - 10 4512 16664 63 27 16 251 0 2 402 0 24 82 1 0 636 0 1 312 0 4 47 7 6 69 8 1461 220 0 2 25 1 7 184 1 2 13 6 4 106 0 2 159 0 1 99 1 0 46 0 1 255 chain 38292 chr9 141213431 + 1847432 1847954 L1PA7 6471 + 5941 6470 71718 364 4 12 11 5 1 37 2 4 44 13 17 30 3 0 9 chain 6014 chr9 141213431 + 1854140 1854219 L1PB1 5432 - 10 86 185096 18 1 0 13 1 0 21 1 0 24 chain 348620 chr9 141213431 + 1860887 1865122 L1PA6 6164 + 1882 6159 11647 31 5 9 91 0 1 162 1 0 157 0 1 65 0 4 193 0 3 111 0 10 182 0 1 281 0 1 4 0 2 350 9 5 54 1 0 272 0 1 132 0 3 362 3 7 46 1 7 206 8 7 313 0 1 105 0 2 80 1 2 45 0 3 121 0 3 139 1 2 621 1 0 74 2 0 5 chain 3461 chr9 141213431 + 1906156 1906195 U5 65 + 5 44 215978 39 chain 38050 chr9 141213431 + 1922583 1923032 L1PA5 6144 + 5677 6132 72057 214 1 0 90 8 15 136 chain 502532 chr9 141213431 + 1931099 1936804 L1PA5 6144 - 7 5738 6699 246 1 0 181 0 1 538 0 1 366 0 13 353 5 1 96 0 4 18 0 6 1504 0 14 1040 4 0 1297 4 0 52 chain 4693 chr9 141213431 + 1971286 1971335 THE1B 368 + 258 307 198601 49 chain 109370 chr9 141213431 + 1971423 1972975 THE1B-int 1605 + 27 1600 34350 92 54 0 154 1 7 115 0 64 158 17 22 42 25 21 43 0 1 396 3 7 45 27 28 74 18 15 192 0 1 96 chain 7694 chr9 141213431 + 1985207 1985382 L1MA3 4352 - 0 161 172967 17 65 53 23 2 0 68 chain 4638 chr9 141213431 + 2006672 2006730 LTR33A_ 513 + 430 513 199216 27 0 25 31 chain 15390 chr9 141213431 + 2053101 2053323 L1PA16 3655 - 52 252 140232 10 19 0 16 3 0 174 chain 22786 chr9 141213431 + 2069313 2069576 AluY 311 + 39 300 116650 79 2 0 182 chain 15799 chr9 141213431 + 2149052 2149235 THE1A 353 - 0 183 138957 183 chain 5317 chr9 141213431 + 2188632 2188705 MLT1E2 623 - 0 72 191858 50 1 0 22 chain 142092 chr9 141213431 + 2221396 2222983 L1PA4 6152 + 4551 6138 25804 1587 chain 27451 chr9 141213431 + 2252619 2252969 THE1B 368 + 0 368 94812 44 0 15 82 0 4 12 13 12 199 chain 53356 chr9 141213431 + 2264225 2264991 LTR17 781 - 0 781 56801 12 0 1 18 0 22 18 22 3 317 4 1 9 5 8 42 8 7 105 4 12 172 6 10 24 chain 28653 chr9 141213431 + 2275705 2276100 LTR7 482 + 0 477 90511 101 3 48 76 5 36 116 0 4 38 12 14 44 chain 291260 chr9 141213431 + 2276107 2279810 HERVH-int 3825 + 0 3825 13943 156 0 3 174 1 0 6 8 9 14 17 18 90 1 5 14 3 1 13 0 2 13 25 112 13 13 75 62 59 0 63 0 3 56 7 8 30 0 8 278 15 0 205 9 0 254 4 31 290 0 4 65 1 0 192 0 4 607 1 0 164 15 16 44 0 1 360 0 1 361 chain 28636 chr9 141213431 + 2281018 2281512 LTR7 482 + 0 470 90571 101 20 14 65 51 0 44 7 39 22 8 7 127 12 14 37 chain 53164 chr9 141213431 + 2282976 2283934 MER4E1 777 - 2 777 56914 110 4 0 95 0 102 52 285 0 251 0 4 129 0 1 8 1 0 23 chain 176897 chr9 141213431 + 2308492 2311250 L1MA2 4263 - 149 3070 21261 9 1 0 16 14 5 9 1 0 17 34 27 56 30 28 82 64 233 44 9 8 454 25 15 9 0 12 179 3 2 241 92 90 258 1 0 4 0 11 38 1 2 69 1 2 174 1 2 5 0 2 45 16 0 10 1 0 32 7 11 63 0 3 51 16 18 5 1 0 232 8 9 17 22 23 6 1 0 53 0 4 10 0 3 7 1 3 213 chain 9971 chr9 141213431 + 2311253 2311381 MER85 139 + 0 139 160720 44 0 1 50 0 10 34 chain 19384 chr9 141213431 + 2312650 2313010 THE1C 375 + 0 375 128993 63 28 29 15 8 9 61 29 29 19 11 24 126 chain 80383 chr9 141213431 + 2372365 2373416 L1PREC2 3366 + 1819 2866 43440 164 0 4 91 1 4 143 0 1 526 2 0 26 0 1 27 1 0 11 6 0 33 1 0 3 3 0 13 chain 40118 chr9 141213431 + 2392734 2393182 MER9a3 513 + 0 448 69159 58 0 1 4 1 0 385 chain 462413 chr9 141213431 + 2397727 2403390 L1PA7 6471 - 1 5730 8305 389 0 1 134 0 1 324 1 0 850 0 12 83 1 5 183 0 1 275 0 2 200 7 6 168 1 0 418 0 1 115 0 1 629 0 1 38 0 2 408 0 1 101 0 1 117 7 9 15 0 34 213 0 8 27 17 11 335 0 1 5 1 0 107 1 2 34 1 2 125 1 2 332 chain 2803 chr9 141213431 + 2407015 2407061 MER52A 1651 + 898 935 228690 21 9 0 16 chain 62048 chr9 141213431 + 2431563 2432280 L1PA7 6471 - 3 719 51880 9 3 0 330 0 1 191 0 1 184 chain 362294 chr9 141213431 + 2433699 2438979 L1PB1 5432 - 18 5410 11314 13 1 0 8 1 0 23 1 0 24 3 1 13 10 7 13 27 16 14 4 3 43 1 0 17 1 0 50 19 13 10 1 0 12 5 4 13 16 14 215 1 4 258 3 0 42 0 1 72 0 4 49 0 1 139 1 2 327 0 4 44 0 2 56 27 4 138 12 17 53 3 0 7 31 30 55 0 1 213 1 0 213 0 8 97 7 8 31 4 3 65 0 2 5 3 1 102 22 16 290 1 0 26 1 0 32 11 16 99 13 150 419 0 2 26 7 20 315 20 18 4 0 1 370 7 8 121 6 4 56 8 3 63 0 3 82 5 0 7 4 9 48 12 14 59 6 5 72 1 0 4 7 8 117 46 45 41 17 17 218 chain 303479 chr9 141213431 + 2444328 2447800 L1PA4 6152 + 2665 6143 13268 318 0 24 157 0 1 100 0 2 449 25 6 448 7 0 798 0 7 234 3 1 933 chain 31093 chr9 141213431 + 2449932 2450320 MLT2A1 477 + 0 385 82355 169 4 1 215 chain 3120 chr9 141213431 + 2450614 2450647 MER61A 341 + 308 341 222555 33 chain 13454 chr9 141213431 + 2454339 2454616 L1PB1 5432 - 10 264 146511 18 1 0 7 7 6 21 1 0 24 2 0 14 1 0 5 7 5 11 9 0 11 2 0 4 1 0 16 1 0 44 18 16 52 chain 3156 chr9 141213431 + 2488684 2488760 MER33 330 - 36 112 221808 7 0 10 7 6 0 15 5 0 6 3 4 27 chain 3243 chr9 141213431 + 2502938 2502978 MER21C 908 - 817 857 220169 40 chain 11433 chr9 141213431 + 2543672 2543823 L1PA10 4194 - 44 191 154555 34 3 0 40 1 0 73 chain 7204 chr9 141213431 + 2566556 2566756 MER58A 224 - 8 219 176044 7 0 2 20 94 103 79 chain 30337 chr9 141213431 + 2580819 2581280 MLT2A1 477 + 0 477 83813 48 0 2 88 4 5 19 6 10 213 41 51 22 1 0 19 chain 385780 chr9 141213431 + 2583955 2589003 L1PB1 5432 + 84 5099 10582 205 3 1 381 0 1 90 0 1 632 1 0 7 2 0 5 25 11 406 0 1 175 13 14 92 5 6 41 0 1 45 0 1 47 2 0 5 10 11 162 0 6 8 6 0 49 23 9 200 0 1 144 18 14 44 5 9 817 13 6 536 0 4 357 4 0 470 chain 27047 chr9 141213431 + 2707425 2707779 L1PA8 5853 + 5497 5847 96117 22 0 3 42 1 0 47 2 0 68 2 1 8 1 0 52 2 1 19 1 0 87 chain 5093 chr9 141213431 + 2711967 2712029 MER3 215 - 5 67 194147 62 chain 25438 chr9 141213431 + 2713840 2714205 L1PA8 5853 + 5493 5853 102506 71 1 0 44 2 0 72 1 0 4 11 5 6 0 7 38 2 1 19 1 0 93 chain 15521 chr9 141213431 + 2727244 2727426 L1PA4 6152 + 5951 6134 139825 50 0 1 132 chain 4311 chr9 141213431 + 2761308 2761361 LTR73 568 + 474 527 203078 53 chain 157538 chr9 141213431 + 2773425 2775506 L1PA10 4194 + 2089 4161 23654 137 0 4 232 1 0 167 0 1 15 17 5 86 1 0 376 0 2 17 13 11 44 0 1 128 1 6 4 0 1 93 1 0 108 8 13 18 11 1 87 0 2 298 0 2 134 5 4 29 4 1 34 1 0 11 chain 23961 chr9 141213431 + 2778044 2778466 L1PA15 4387 + 3916 4325 110562 16 1 0 67 4 5 100 1 0 26 1 0 39 17 16 23 14 9 39 17 14 44 3 1 10 chain 29972 chr9 141213431 + 2792052 2792439 MLT2A1 477 + 0 385 84906 169 4 1 9 0 1 18 1 2 101 2 1 83 chain 4199 chr9 141213431 + 2792572 2792624 MLT2A1 477 + 0 53 204570 5 0 1 47 chain 17820 chr9 141213431 + 2794351 2794674 THE1C 375 - 52 375 133333 86 16 21 10 5 0 7 0 6 6 1 2 92 10 25 15 26 6 33 2 0 14 chain 26171 chr9 141213431 + 2797397 2797689 AluYf4 310 + 9 302 99322 198 0 1 94 chain 62292 chr9 141213431 + 2848946 2849668 L1PA5 6144 + 5411 6140 51756 194 0 3 477 0 4 51 chain 18113 chr9 141213431 + 2863459 2863880 MSTA 426 + 0 414 132558 52 26 15 5 1 0 94 114 112 16 7 0 7 7 21 92 chain 534434 chr9 141213431 + 2893012 2900229 L1PA4 6152 - 1 6150 3660 51 0 4 463 1 0 331 0 2 1219 0 5 636 0 3 781 12 2 267 0 1 96 0 3 417 1041 0 1005 0 1 31 47 13 244 1 0 574 chain 90256 chr9 141213431 + 2897297 2898316 L1PA3long 6157 + 5136 6157 39556 43 0 1 443 0 1 533 chain 33052 chr9 141213431 + 2925362 2925761 L1PA7 6471 - 1813 2225 79133 39 0 1 242 0 12 118 chain 148396 chr9 141213431 + 2925765 2927539 L1PA7 6471 + 4694 6468 24828 251 5 4 283 0 3 1002 0 4 123 3 1 96 4 0 7 chain 4728 chr9 141213431 + 2929852 2929906 L1MB1 2102 - 98 152 198182 54 chain 37858 chr9 141213431 + 2975229 2975733 MLT2A2 560 - 22 559 72334 94 3 18 9 0 11 54 0 4 16 1 2 173 5 7 149 chain 4265 chr9 141213431 + 2980889 2981397 LTR9B 643 + 6 519 203687 19 1 0 15 89 89 13 317 330 28 7 0 19 chain 25729 chr9 141213431 + 2997926 2998194 AluYa5 310 - 5 273 101171 268 chain 14025 chr9 141213431 + 3000000 3000156 L1PA4 6152 - 246 402 144480 156 chain 27862 chr9 141213431 + 3009659 3010032 THE1C 375 - 0 375 93485 26 1 0 162 1 2 73 7 8 18 0 1 85 chain 37022 chr9 141213431 + 3029839 3030370 MLT2A2 560 - 0 560 73491 57 9 19 23 17 9 36 1 12 206 0 8 10 10 18 162 chain 175317 chr9 141213431 + 3051084 3053037 L1PA4 6152 + 4168 6138 21418 1799 0 17 154 chain 18761 chr9 141213431 + 3057250 3057468 L1PA7 6471 + 6242 6460 130794 218 chain 29875 chr9 141213431 + 3078465 3078780 AluYb8 318 + 0 315 85184 315 chain 24415 chr9 141213431 + 3095934 3096189 AluYa5 310 + 38 293 108004 255 chain 4913 chr9 141213431 + 3106876 3106933 L1P1 4361 - 4137 4194 196133 57 chain 478814 chr9 141213431 + 3106937 3113299 L1PA5 6144 + 665 6130 7772 362 1 0 241 0 1 1315 0 3 429 0 1 153 1 0 880 903 0 1039 1 2 341 0 1 182 0 1 514 chain 79029 chr9 141213431 + 3110323 3111220 MER11D 897 - 0 897 44042 616 2 1 5 0 1 274 chain 28418 chr9 141213431 + 3120868 3121202 L1PA7 6471 - 2 337 91506 153 0 1 181 chain 20874 chr9 141213431 + 3121209 3121451 L1PA7 6471 + 5889 6131 124382 242 chain 424234 chr9 141213431 + 3141943 3147076 L1PA7 6471 - 2 5190 9440 10 5 0 295 0 2 382 5 7 145 4 7 688 0 17 83 4 3 13 0 4 524 10 9 272 0 1 8 2 3 75 0 1 145 1 0 4 9 14 184 0 3 47 1 0 247 0 8 11 5 9 612 1 2 111 0 2 305 0 9 828 0 1 97 chain 50142 chr9 141213431 + 3147080 3147622 L1PA2 6032 - 0 542 58910 542 chain 20717 chr9 141213431 + 3155331 3155778 L1MA5A 2387 - 30 427 124907 17 1 0 10 1 0 13 37 24 61 29 1 16 3 0 29 2 1 13 0 2 10 7 5 43 11 10 37 15 14 18 1 0 73 chain 40570 chr9 141213431 + 3158832 3159271 L1PA2 6032 + 5593 6032 68479 439 chain 16976 chr9 141213431 + 3238748 3238983 AluSp 311 + 43 269 135649 79 6 0 96 10 5 13 1 3 30 chain 17857 chr9 141213431 + 3306561 3306762 L1PA4 6152 + 5952 6152 133219 195 1 0 5 chain 510680 chr9 141213431 + 3312602 3318517 L1PA5 6144 + 0 6129 6099 91 0 217 861 9 0 387 0 1 756 3 1 45 0 1 531 0 1 266 1 0 1178 1 9 926 2 1 163 1 0 694 chain 150990 chr9 141213431 + 3339738 3341414 L1PA4 6152 + 4475 6151 24480 1676 chain 44164 chr9 141213431 + 3352878 3353357 L1PA3long 6157 + 5678 6157 63995 479 chain 2988 chr9 141213431 + 3372262 3372440 LTR16C 481 + 243 429 225294 16 129 137 33 chain 92542 chr9 141213431 + 3376570 3377598 L1PA5 6144 + 5110 6144 38805 886 0 6 142 chain 4030 chr9 141213431 + 3390906 3390966 MADE1 96 - 0 95 206927 16 0 34 6 1 2 37 chain 68784 chr9 141213431 + 3396054 3396833 L1PA4 6152 - 12 792 48906 9 0 2 131 1 0 638 chain 7105 chr9 141213431 + 3398851 3398927 L1HS 6032 + 5956 6032 176715 76 chain 3408 chr9 141213431 + 3434044 3434102 MER5A1 166 - 52 111 216953 17 9 10 32 chain 4819 chr9 141213431 + 3440506 3440836 L1ME1 1623 + 133 458 197128 30 1 0 30 246 242 23 chain 373677 chr9 141213431 + 3536758 3540949 L1PA4 6152 - 11 4209 10970 132 1 2 1282 0 4 1550 2 0 463 8 6 83 2 0 192 0 3 34 0 4 72 0 1 370 chain 530047 chr9 141213431 + 3556886 3563322 L1PA7 6471 - 14 6453 4183 731 0 1 23 1 0 85 1 4 717 1 14 230 3 0 174 2 1 468 0 1 118 6 1 336 0 4 770 0 1 133 0 1 733 28 0 276 0 2 394 0 4 727 4 13 85 1 2 86 0 1 303 chain 51539 chr9 141213431 + 3587766 3588338 L1PA4 6152 + 5573 6151 57936 430 0 6 142 chain 44894 chr9 141213431 + 3604449 3605029 MER39B 650 - 62 646 63182 29 0 1 57 1 0 16 0 1 28 4 5 114 0 2 331 chain 124533 chr9 141213431 + 3607994 3610008 L1PA15 4387 - 80 2176 29533 37 6 3 51 1 0 9 4 0 22 1 0 55 1 0 24 10 9 42 41 42 49 1 0 30 1 0 15 0 3 26 3 1 53 7 3 21 2 0 226 2 0 218 4 8 27 68 167 171 53 54 10 3 0 52 3 0 5 0 3 45 1 0 74 34 36 223 7 8 158 4 5 11 0 1 4 1 0 77 0 1 10 4 0 7 chain 197450 chr9 141213431 + 3614638 3617317 L1PA11 4918 - 351 3060 19394 13 1 0 15 30 22 9 4 0 20 1 0 14 2 0 43 41 51 49 6 0 322 0 1 188 13 23 132 4 0 233 1 2 111 0 2 475 1 2 31 0 1 238 7 10 228 5 8 16 6 27 84 6 9 330 chain 480651 chr9 141213431 + 3618348 3624315 L1PA7 6471 - 14 5990 7707 131 20 21 614 10 0 13 1 4 46 1 4 952 0 4 86 0 1 7 2 1 162 0 1 91 1 0 259 2 1 56 0 1 187 1 6 286 10 7 19 1 0 397 0 4 454 0 1 83 4 0 220 0 1 215 4 6 230 0 1 204 6 7 858 12 13 322 chain 76476 chr9 141213431 + 3640231 3641172 L1PA8 5853 - 763 1708 45225 79 1 3 379 0 1 293 0 1 189 chain 60811 chr9 141213431 + 3641172 3641938 L1PA8 5853 + 5100 5853 52391 200 0 1 263 1 0 17 7 0 27 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 11040 chr9 141213431 + 3643113 3643245 L1PA7 6471 - 6 136 156053 6 2 0 124 chain 6247 chr9 141213431 + 3673096 3673171 MLT1D 503 - 15 90 183189 75 chain 5539 chr9 141213431 + 3686432 3686496 MER96B 391 - 221 285 189672 64 chain 125455 chr9 141213431 + 3694466 3695861 L1PA4 6152 + 4755 6151 29257 215 0 1 1180 chain 96895 chr9 141213431 + 3733630 3734981 LTR12C 1709 + 0 1709 37582 12 8 17 11 15 6 217 0 1 19 4 0 6 3 8 41 0 43 30 0 1 6 1 0 46 0 1 139 6 7 39 0 278 137 7 56 30 4 5 59 20 13 15 10 0 196 0 1 187 1 0 82 chain 20192 chr9 141213431 + 3749777 3750092 LTR7 482 + 128 482 126553 94 5 6 19 0 31 34 2 0 42 8 15 50 12 14 49 chain 38515 chr9 141213431 + 3786939 3788204 THE1C-int 1605 - 0 1297 31968 47 0 1 819 13 42 53 5 8 95 8 0 88 5 12 132 chain 122974 chr9 141213431 + 3788579 3790124 THE1B-int 1605 + 18 1592 30057 215 0 2 138 0 1 52 0 25 494 0 1 646 chain 9408 chr9 141213431 + 3790489 3790798 THE1C-int 1605 - 1297 1605 31968 125 3 1 164 1 2 16 chain 26479 chr9 141213431 + 3790800 3791177 THE1C 375 - 2 375 98131 16 8 7 146 23 18 8 0 2 176 chain 8956 chr9 141213431 + 3803108 3803282 MER2 342 + 8 220 165848 43 48 81 6 0 5 77 chain 10958 chr9 141213431 + 3808491 3808635 L1PA8 5853 - 0 150 156368 52 0 8 33 1 0 19 2 1 37 chain 318150 chr9 141213431 + 3812649 3816364 HERVH-int 3825 - 0 3825 12665 535 0 1 1214 0 18 518 22 2 235 0 1 378 0 1 138 4 5 14 0 2 6 0 1 54 1 0 46 2 1 6 21 0 18 1 118 9 0 3 5 0 5 111 0 4 43 1 0 333 chain 28721 chr9 141213431 + 3816375 3816765 LTR7 482 - 9 482 90238 149 14 58 41 0 1 109 9 47 68 chain 21366 chr9 141213431 + 3870423 3870795 THE1B 368 - 0 366 122629 75 1 0 98 31 26 46 41 42 32 1 2 32 2 0 13 chain 8469 chr9 141213431 + 3941373 3941473 L1PA2 6032 - 0 97 168465 13 3 0 84 chain 6481 chr9 141213431 + 3959758 3959839 MLT1B 390 + 68 149 181384 81 chain 21819 chr9 141213431 + 3983038 3983383 THE1B 368 + 9 359 120947 48 46 47 68 1 0 29 2 3 101 1 5 49 chain 44829 chr9 141213431 + 3983392 3984001 THE1B-int 1605 + 0 637 63257 12 22 24 393 2 27 23 3 4 154 chain 21939 chr9 141213431 + 4030317 4030713 L1MA1 4479 - 331 739 120466 6 1 0 35 2 0 29 1 0 21 11 20 58 2 1 23 12 8 85 0 3 5 20 28 57 1 0 6 6 8 15 chain 82809 chr9 141213431 + 4049640 4050604 L1PA6 6164 + 5197 6162 42414 524 0 1 440 chain 24891 chr9 141213431 + 4058706 4059010 AluY 311 + 8 311 105401 115 1 0 188 chain 36402 chr9 141213431 + 4061065 4061479 L1PA5 6144 - 1 414 74366 15 3 0 301 0 2 95 chain 6815 chr9 141213431 + 4095020 4095211 L1MA5A 2387 - 28 169 178839 19 12 10 13 47 27 60 28 0 12 chain 347733 chr9 141213431 + 4186004 4189898 L1PA3long 6157 - 0 3906 11674 46 0 2 99 1 3 693 0 4 1434 0 1 1002 1 0 81 0 4 462 2 0 66 0 2 7 chain 123893 chr9 141213431 + 4189899 4191283 L1PA3long 6157 + 858 2242 29735 306 1 2 550 1 0 526 chain 19893 chr9 141213431 + 4238941 4239158 L1PA4 6152 - 253 470 127506 217 chain 14626 chr9 141213431 + 4239160 4239324 L1PA4 6152 + 5984 6152 142501 150 1 0 7 0 5 6 chain 4029 chr9 141213431 + 4241368 4241461 L1MA4 2864 + 2724 2809 206942 14 22 16 11 3 1 43 chain 485732 chr9 141213431 + 4248092 4254060 L1PA7 6471 - 3 6471 7530 328 1 0 256 0 1 181 0 2 65 27 485 218 1 8 246 0 4 861 1 5 202 1 0 32 0 4 82 3 4 380 0 6 450 9 7 144 0 3 115 0 2 624 9 8 102 8 10 33 0 1 78 6 7 7 5 0 729 0 1 6 1 6 353 0 2 353 5 11 46 chain 24503 chr9 141213431 + 4264895 4265193 AluY 311 + 11 304 107527 115 5 0 178 chain 106844 chr9 141213431 + 4321927 4323232 L1PA6 6164 - 46 1317 35019 466 23 0 132 9 0 468 8 6 199 chain 28519 chr9 141213431 + 4346671 4346971 AluYa5 310 + 1 301 91101 300 chain 10029 chr9 141213431 + 4372308 4372476 MER74B 573 + 0 163 160433 12 1 0 43 19 18 43 3 0 47 chain 20069 chr9 141213431 + 4386851 4388199 MER51-int 1546 - 4 1159 126924 22 19 20 46 93 80 72 515 377 16 81 89 21 41 35 30 7 0 25 1 0 94 243 206 22 chain 27060 chr9 141213431 + 4397016 4397314 AluYa5 310 - 2 300 96079 298 chain 125697 chr9 141213431 + 4405410 4407352 L1MA2 4263 + 1603 3323 29187 239 0 3 41 0 3 227 5 9 157 24 16 143 2 1 53 229 0 24 1 0 34 0 4 83 8 6 122 4 2 40 0 4 93 5 7 240 4 5 164 chain 418829 chr9 141213431 + 4448851 4454001 L1PA6 6164 + 1 6159 9562 63 1 2 401 1 0 382 1 2 71 3 2 1055 2 1 160 0 1 192 0 1 447 0 1 91 0 1 133 3 1 53 5 684 614 9 13 245 2 9 288 8 9 268 19 1 126 0 4 91 0 329 271 5 6 140 chain 498305 chr9 141213431 + 4466666 4472764 L1PA6 6164 + 0 6160 6937 282 65 0 7 6 71 149 2 1 172 12 13 25 1 0 4 6 7 208 0 25 547 3 7 524 1 0 289 8 10 663 0 1 177 2 3 4 0 1 75 0 3 93 1 29 302 0 1 7 1 0 251 2 3 365 1 0 1835 2 0 6 chain 2971 chr9 141213431 + 4478677 4478744 L1MC5 759 + 256 323 225648 11 1 0 21 18 19 16 chain 3271 chr9 141213431 + 4512663 4512699 MADE1 96 - 60 96 219569 36 chain 536769 chr9 141213431 + 4531071 4537192 L1PA4 6152 + 1 6143 3345 1132 6 0 103 1 0 1458 0 5 472 1 0 114 1 0 348 0 5 548 0 1 132 1 0 488 0 15 479 0 2 831 0 3 6 chain 25972 chr9 141213431 + 4562635 4562919 L1PA2 6032 - 219 504 100130 122 0 1 162 chain 19091 chr9 141213431 + 4562919 4563131 L1PA2 6032 + 5820 6032 129838 212 chain 23399 chr9 141213431 + 4565340 4565711 THE1D 372 - 0 372 113654 148 13 14 16 40 41 51 2 1 101 chain 542356 chr9 141213431 + 4605799 4611803 L1PA3long 6157 + 0 6152 2454 152 0 1 174 0 13 145 0 1 295 0 128 26 0 4 2798 8 9 2406 chain 32548 chr9 141213431 + 4627807 4628360 L1MA3 4352 + 3777 4311 79946 84 9 11 7 2 0 20 13 23 167 54 30 61 2 1 78 2 0 23 8 6 23 chain 13614 chr9 141213431 + 4641327 4641586 MER2 342 - 65 255 145919 31 72 0 83 6 7 45 0 2 22 chain 39633 chr9 141213431 + 4648733 4649418 L1PB1 5432 - 44 645 69850 18 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 4 3 41 1 0 15 2 1 52 2 0 10 6 2 9 1 0 14 1 0 19 1 0 7 53 4 77 0 1 58 13 8 172 chain 5418 chr9 141213431 + 4657333 4657503 MLT1C 463 + 0 162 190814 31 21 20 25 1 0 24 54 48 14 chain 158445 chr9 141213431 + 4659324 4661138 L1PA5 6144 + 4280 6132 23538 190 8 6 334 1 0 432 1 0 205 0 1 548 0 41 95 chain 14994 chr9 141213431 + 4681436 4681648 AluSp 311 + 74 293 141336 121 20 28 53 2 1 16 chain 2953 chr9 141213431 + 4760568 4760684 L1MA8 2339 - 60 173 226013 22 5 0 18 57 59 14 chain 5223 chr9 141213431 + 4774264 4774540 MLT1I 406 - 0 304 192804 26 117 120 21 53 86 44 8 0 7 chain 13250 chr9 141213431 + 4775009 4775154 L1PA4 6152 - 6 151 147287 145 chain 20000 chr9 141213431 + 4775154 4775373 L1PA4 6152 + 5775 5994 127144 219 chain 103246 chr9 141213431 + 4784014 4785907 L1M1 2793 + 1169 2695 35938 13 1 0 87 4 0 6 13 10 212 1 4 56 16 16 120 8 6 58 1 2 28 0 1 36 5 6 71 0 3 34 1 6 149 0 2 8 1 8 10 0 2 235 0 2 73 4 0 7 0 2 35 377 0 41 1 0 26 3 2 82 1 0 45 2 1 11 1 0 10 chain 26130 chr9 141213431 + 4785309 4785657 L1PA8 5853 + 5508 5849 99481 56 1 0 44 2 0 71 1 0 9 2 1 51 2 1 19 1 0 89 chain 30497 chr9 141213431 + 4790350 4791001 L1MA2 4263 + 3705 4218 83435 101 3 0 150 11 9 93 7 0 47 202 80 5 2 0 13 1 0 3 1 0 12 chain 3490 chr9 141213431 + 4806644 4806683 L1MD1 2063 - 1923 1962 215504 39 chain 80605 chr9 141213431 + 4813187 4814145 L1PA3long 6157 + 5147 6147 43341 160 1 0 701 0 39 51 0 4 45 chain 24976 chr9 141213431 + 4819540 4819827 AluSc 308 + 14 301 104926 287 chain 3047 chr9 141213431 + 4838779 4838811 Charlie4z 170 + 104 136 224089 32 chain 53988 chr9 141213431 + 4886928 4887563 PABL_A 660 + 0 659 56374 24 0 15 45 0 9 566 chain 531781 chr9 141213431 + 4896101 4902542 L1PA7 6471 - 17 6470 3990 56 6 10 256 0 1 426 2 0 88 0 3 83 0 1 286 22 0 202 1 12 219 0 13 1219 22 26 453 0 4 103 10 1 136 0 2 1952 4 0 6 3 7 484 1 2 205 10 11 186 chain 541675 chr9 141213431 + 4915073 4921190 L1PA4 6152 - 1 6151 2563 459 0 2 1235 0 3 850 0 1 107 0 17 55 0 1 81 0 3 262 0 1 538 0 2 1112 0 1 185 9 8 64 0 3 1160 chain 2462 chr9 141213431 + 4926001 4926030 L1ME1 1623 + 1544 1573 233556 29 chain 543339 chr9 141213431 + 4947716 4953848 L1PA4 6152 - 4 6145 2291 134 0 7 11 7 0 96 1 2 590 0 4 990 1 2 7 1 0 2558 0 1 36 1 0 276 0 1 269 0 3 1154 chain 29921 chr9 141213431 + 4956807 4957118 AluYb8 318 + 0 311 85032 311 chain 14172 chr9 141213431 + 4999503 4999680 MLT2A1 477 - 8 228 143981 42 0 44 60 1 0 74 chain 527601 chr9 141213431 + 5031771 5037857 L1PA4 6152 + 0 6142 4437 100 2 0 199 26 37 297 0 2 887 1 7 1155 0 3 356 1 3 137 1 0 67 0 4 57 0 1 590 0 3 501 0 5 396 0 15 476 1 5 73 1 3 583 1 2 178 chain 13100 chr9 141213431 + 5039304 5039474 MER2 342 + 92 266 147843 22 0 2 86 0 2 62 chain 29582 chr9 141213431 + 5042120 5042436 AluYb9 318 - 2 318 86262 316 chain 8859 chr9 141213431 + 5049808 5049934 Tigger3a 397 - 131 255 166332 16 6 4 104 chain 4172 chr9 141213431 + 5057419 5057465 L1MB2 1706 - 12 58 204946 46 chain 79250 chr9 141213431 + 5082035 5082999 LTR5B 1012 - 0 1012 43930 8 0 2 79 1 0 93 4 8 334 0 26 264 0 3 47 0 14 134 chain 505210 chr9 141213431 + 5100912 5107035 L1PA6 6164 + 0 6159 6519 63 1 2 400 1 0 88 0 3 109 0 3 449 0 13 332 9 8 258 1 0 133 1 0 464 25 0 417 0 4 434 5 10 317 0 4 192 1 3 686 0 3 64 8 0 346 0 2 368 0 3 110 0 9 15 0 4 81 0 1 163 3 0 220 0 1 217 1 19 141 chain 89765 chr9 141213431 + 5114957 5116071 L1PA7 6471 + 5348 6470 39733 135 0 3 17 1 3 32 5 5 71 0 3 579 0 4 210 1 0 53 3 0 7 chain 432292 chr9 141213431 + 5133433 5138739 L1PA7 6471 + 1036 6468 9252 231 1 5 36 1 2 315 0 2 197 0 4 17 1 0 315 0 4 155 0 1 200 0 2 112 1 2 61 1 3 33 1 0 248 0 60 55 0 4 112 1 0 272 1 2 11 2 0 37 5 4 125 0 1 136 6 10 16 4 3 59 3 4 782 0 4 267 5 4 36 2 0 93 0 1 108 0 31 179 0 1 224 0 6 670 1 2 27 7 8 76 1 0 57 chain 110111 chr9 141213431 + 5143994 5145773 L1PA13 3608 - 1719 3515 34178 206 1 0 40 0 1 132 0 1 71 10 12 27 17 32 56 6 10 32 0 3 56 0 4 80 5 9 59 5 7 4 0 1 139 1 5 271 2 0 50 0 6 41 1 0 19 21 17 16 1 0 19 6 2 6 0 1 9 2 0 17 1 0 4 13 12 121 48 46 27 28 17 20 7 4 12 2 1 18 14 11 10 10 16 16 chain 17927 chr9 141213431 + 5153483 5153688 L1PA4 6152 + 4143 4351 133037 58 0 2 68 0 1 79 chain 79553 chr9 141213431 + 5153688 5154634 L1PA4 6152 + 4355 5301 43801 946 chain 74906 chr9 141213431 + 5154635 5155475 L1PA4 6152 + 5301 6141 46057 840 chain 32589 chr9 141213431 + 5155545 5155932 L1PA7 6471 + 6086 6470 79872 373 2 0 7 1 0 4 chain 22393 chr9 141213431 + 5159899 5160196 AluSq2 311 + 10 304 118521 9 3 0 99 3 2 13 0 1 170 chain 204303 chr9 141213431 + 5169265 5172049 L1PA10 4194 + 1323 4150 18904 286 1 3 18 0 1 94 1 2 93 0 1 11 5 9 120 1 0 147 1 0 7 0 1 7 0 1 13 16 30 275 0 1 5 1 0 32 0 4 74 0 1 6 0 5 32 2 1 23 1 2 16 10 6 21 0 4 28 5 8 27 1 2 378 0 2 15 0 2 149 1 0 158 0 3 25 1 0 18 1 2 15 0 1 36 0 2 121 16 7 179 0 3 92 0 4 154 0 1 4 0 1 5 3 0 33 chain 53163 chr9 141213431 + 5178596 5179344 L1PA11 4918 + 3759 4497 56915 95 0 2 5 8 1 54 1 0 5 0 1 118 0 2 166 10 6 117 1 0 62 2 1 16 1 3 61 2 0 14 1 0 9 chain 74155 chr9 141213431 + 5180052 5181124 MER11A 1151 + 0 1151 46428 55 0 99 22 8 0 54 0 4 60 4 0 32 0 2 115 0 1 70 1 0 23 0 1 146 0 1 125 0 26 26 43 0 24 24 6 24 0 9 41 2 1 16 0 1 80 0 6 41 0 4 36 chain 24769 chr9 141213431 + 5203960 5204387 MSTA 426 - 0 426 106062 124 88 85 17 0 4 12 1 0 4 0 1 47 2 0 132 chain 7713 chr9 141213431 + 5208767 5208889 L1MA4 2864 - 1719 1835 172844 27 14 8 81 chain 23434 chr9 141213431 + 5214904 5215184 L1PA7 6471 + 5338 5622 113456 254 7 11 19 chain 54714 chr9 141213431 + 5215186 5215807 L1PA7 6471 + 5622 6246 55888 76 0 2 450 0 1 95 chain 42282 chr9 141213431 + 5220245 5220742 MER9a2 513 + 0 513 66295 353 0 16 144 chain 317905 chr9 141213431 + 5222857 5227227 L1PA11 4918 + 17 4517 12679 18 8 6 37 2 0 6 2 1 30 1 0 13 2 0 53 1 0 32 15 12 249 1 0 4 12 11 415 0 122 7 0 2 5 1 0 3 8 0 20 0 1 36 0 2 38 1 4 97 5 4 35 0 1 14 0 1 203 0 1 118 0 2 8 0 2 76 0 15 71 19 22 138 0 3 22 0 2 168 10 11 37 2 1 5 0 1 45 3 0 34 0 4 47 0 2 171 0 12 117 1 0 81 7 0 14 5 6 635 0 4 95 1 0 4 0 1 283 6 7 223 4 0 138 0 1 4 1 0 188 15 10 67 16 13 66 2 0 15 9 7 12 4 0 9 chain 37862 chr9 141213431 + 5228940 5230547 HERVK22-int 3844 + 2896 3844 72326 151 1 0 71 1 0 6 1 0 16 16 21 16 1 0 21 1 0 5 6 5 29 15 10 43 160 120 20 11 7 29 821 204 80 2 1 5 0 1 4 0 8 75 chain 117380 chr9 141213431 + 5239798 5241049 L1HS 6032 - 0 1251 31849 1251 chain 208173 chr9 141213431 + 5241049 5243275 L1HS 6032 + 2549 4775 18624 2226 chain 84819 chr9 141213431 + 5246403 5247413 L1PA7 6471 - 7 1014 41582 6 3 0 154 0 1 5 1 0 144 0 1 532 2 1 163 chain 15575 chr9 141213431 + 5251067 5251398 L1PB1 5432 + 5113 5423 139652 30 2 1 14 18 12 46 6 8 13 1 0 40 42 35 14 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 19 chain 179550 chr9 141213431 + 5254216 5256398 L1PA6 6164 - 2 2146 21025 9 2 0 192 0 2 128 1 2 521 2 0 943 0 8 194 45 0 80 30 30 35 chain 82112 chr9 141213431 + 5258897 5259958 MER11B 1079 + 0 1079 42722 22 8 6 288 1 18 432 1 3 73 0 1 73 1 2 5 1 0 8 0 1 110 25 24 13 chain 50940 chr9 141213431 + 5259958 5260702 MER57-int 2662 - 1883 2622 58347 79 11 7 202 1 0 178 7 5 75 0 7 38 1 6 74 36 26 42 chain 60853 chr9 141213431 + 5276353 5277279 L1PA15 4387 + 3408 4306 52405 125 11 2 278 2 0 9 31 28 41 19 16 24 2 1 172 1 0 28 1 0 52 2 1 22 4 0 10 1 0 7 1 2 41 9 6 33 chain 220300 chr9 141213431 + 5280110 5282791 L1PA8 5853 + 3143 5850 17863 222 0 1 4 1 0 76 1 0 8 0 14 221 4 18 663 1 0 165 0 1 451 0 4 285 0 1 285 1 0 46 2 0 67 7 6 59 2 1 19 1 0 90 chain 176674 chr9 141213431 + 5287603 5290103 L1PA11 4918 - 401 2867 21283 9 4 0 20 1 0 13 2 0 37 1 0 23 2 1 8 3 0 12 2 1 65 5 0 161 6 7 11 3 23 380 40 23 191 14 16 97 40 12 34 0 3 263 3 4 602 4 8 51 1 0 222 5 8 15 20 16 130 chain 504816 chr9 141213431 + 5292781 5299171 L1PA7 6471 + 5 6470 6553 230 23 31 137 3 0 9 6 0 61 1 0 9 0 1 94 3 0 165 0 5 66 0 65 11 3 7 6 4 0 303 1 0 47 3 22 82 0 1 69 0 1 467 0 3 66 0 1 77 22 0 88 2 0 5 6 8 490 6 0 902 5 4 42 1 2 695 0 2 7 0 1 191 7 8 664 0 1 138 0 2 314 6 11 84 0 2 307 0 2 329 0 1 117 4 0 12 chain 48028 chr9 141213431 + 5316311 5316898 L1PA7 6471 - 4 604 60460 26 6 20 47 0 1 43 0 1 4 1 0 81 2 0 377 chain 292210 chr9 141213431 + 5326928 5331341 L1P2 5180 + 2 3744 13882 4 0 1 143 1 0 40 11 10 44 18 17 34 1 2 149 8 0 59 12 10 48 1 0 221 1 16 273 7 10 239 4 4 198 0 1 329 0 1 12 22 0 207 324 0 233 15 12 663 1 2 94 325 0 36 4 0 63 10 1 485 0 5 31 0 1 13 0 1 30 chain 29699 chr9 141213431 + 5329021 5329338 AluYb8 318 + 0 317 85829 317 chain 6242 chr9 141213431 + 5331341 5331411 L1PA6 6164 + 5672 5742 183232 70 chain 35665 chr9 141213431 + 5331411 5331819 L1PA6 6164 + 5749 6157 75315 408 chain 104234 chr9 141213431 + 5367077 5368587 L1PA16 3655 + 2077 3592 35683 162 2 0 30 13 14 62 3 0 6 0 8 295 0 2 6 2 0 13 4 3 93 12 10 21 3 7 95 1 0 18 1 0 78 20 23 50 0 3 52 0 2 74 1 0 77 15 13 282 4 1 15 chain 41189 chr9 141213431 + 5368743 5369245 L1PA7 6471 + 5096 5599 67658 460 13 14 29 chain 2178 chr9 141213431 + 5369245 5369284 L1PA7 6471 + 5603 5645 236849 18 5 8 16 chain 28037 chr9 141213431 + 5369284 5369615 L1PA7 6471 + 5654 5983 92867 204 0 1 10 4 1 113 chain 39890 chr9 141213431 + 5369615 5370090 L1PA7 6471 + 5988 6470 69472 143 1 0 184 1 0 82 0 9 64 chain 3496 chr9 141213431 + 5388757 5388902 MIR 256 + 95 241 215411 29 91 92 25 chain 4004 chr9 141213431 + 5389020 5389141 MER90 571 - 90 222 207331 42 60 71 19 chain 112466 chr9 141213431 + 5403939 5405324 L1PA10 4194 + 2746 4150 33546 124 1 0 39 4 8 212 1 0 141 2 1 673 4 25 148 3 0 33 chain 31528 chr9 141213431 + 5409153 5409547 MLT2A1 477 + 0 394 81599 168 1 5 212 4 0 9 chain 5175 chr9 141213431 + 5430150 5430257 LTR40a 516 + 382 507 193300 21 15 0 7 14 47 50 chain 146044 chr9 141213431 + 5432498 5435334 SVA_A 1864 + 6 1864 25161 9 3 0 430 0 39 138 3 0 37 80 0 31 2 0 89 767 43 16 43 0 38 3 0 11 1 0 63 2 0 34 34 0 74 3 0 33 3 0 53 1 0 4 39 0 33 73 0 25 3 0 658 chain 1953 chr9 141213431 + 5433122 5433198 SVA_A 1864 + 697 809 71737 32 0 39 34 3 0 7 chain 2394 chr9 141213431 + 5434109 5434146 SVA_A 1864 + 1025 1059 129287 33 3 0 1 chain 874 chr9 141213431 + 5434298 5434332 SVA_A 1864 + 1058 1095 71737 16 1 4 17 chain 929 chr9 141213431 + 5434503 5434542 SVA_A 1864 + 1038 1075 74925 18 8 6 13 chain 951 chr9 141213431 + 5434575 5434612 SVA_A 1864 + 1292 1332 71737 3 1 4 33 chain 67243 chr9 141213431 + 5439324 5445247 L1PA5 6144 - 16 899 49547 342 5068 24 467 0 4 46 chain 33722 chr9 141213431 + 5445269 5445656 L1PA5 6144 + 5757 6144 78058 387 chain 530211 chr9 141213431 + 5471814 5477960 L1PA5 6144 - 0 6143 4166 282 0 3 1315 0 1 715 1 0 973 7 0 200 0 1 93 0 1 246 0 1 4 1 0 1004 1 0 136 12 3 552 4 0 310 2 1 154 0 14 134 chain 5112 chr9 141213431 + 5484746 5484813 MER44A 345 + 156 228 193957 60 0 5 7 chain 18541 chr9 141213431 + 5490991 5491199 L1PA5 6144 + 5930 6138 131385 208 chain 116259 chr9 141213431 + 5494622 5495955 L1PA4 6152 - 0 1337 32356 844 0 4 489 chain 29472 chr9 141213431 + 5500639 5501047 LTR46 455 + 0 455 86743 188 3 1 112 2 1 55 12 62 36 chain 191657 chr9 141213431 + 5504204 5507321 L1PREC2 3366 + 265 3239 19898 24 1 0 81 0 1 6 1 0 23 1 0 67 2 1 28 0 5 275 5 1 71 3 4 12 12 12 39 6 3 392 1 0 192 0 2 85 9 0 9 1 0 81 1 0 84 12 9 225 8 9 67 0 3 247 0 1 159 5 4 146 3 12 107 2 0 16 1 2 36 1 0 44 7 3 14 29 21 12 2 0 5 8 5 11 3 1 29 284 190 14 56 41 19 10 5 6 4 0 13 chain 34877 chr9 141213431 + 5537479 5537870 L1PA4 6152 + 5741 6132 76367 391 chain 242600 chr9 141213431 + 5539853 5543203 L1PB1 5432 + 1925 5289 16633 273 0 8 89 0 1 261 0 17 49 1 2 123 31 33 30 0 1 6 3 0 6 4 6 4 1 0 423 6 7 147 1 6 54 0 3 195 5 42 177 10 2 124 4 0 261 0 1 28 0 1 140 0 6 6 6 0 9 5 0 162 3 0 168 2 10 37 1 2 150 4 2 106 49 11 13 8 7 12 19 14 8 2 0 52 2 1 15 1 0 45 1 0 8 chain 5895 chr9 141213431 + 5551034 5551183 MLT1D 503 - 325 481 186232 22 63 70 64 chain 49601 chr9 141213431 + 5572093 5572737 L1PA8 5853 + 5187 5846 59320 334 1 0 43 1 0 46 2 0 69 1 0 8 3 1 12 10 11 22 8 29 84 chain 22037 chr9 141213431 + 5580521 5580905 MSTA 426 - 0 426 120077 67 43 63 56 23 23 11 2 0 67 6 31 4 1 0 104 chain 12222 chr9 141213431 + 5610877 5611123 L1PB1 5432 - 5 227 151332 5 2 0 18 1 0 13 1 0 21 1 0 21 20 17 5 2 0 30 12 1 16 1 0 43 1 0 16 2 1 15 chain 20150 chr9 141213431 + 5631465 5631706 AluSc 308 + 60 300 126674 71 2 1 168 chain 60846 chr9 141213431 + 5664424 5665623 L1PA11 4918 - 4048 4911 52407 17 0 1 58 1 0 49 0 1 257 0 4 180 350 17 27 0 4 36 2 1 5 2 0 85 2 0 13 1 0 30 2 1 6 2 0 6 2 1 29 2 0 35 chain 6653 chr9 141213431 + 5665254 5665331 L1P3 4156 - 1276 1353 180059 77 chain 7367 chr9 141213431 + 5667833 5667930 THE1C-int 1605 - 1509 1605 175002 81 4 3 12 chain 15338 chr9 141213431 + 5669209 5669548 L1PB1 5432 - 63 368 140375 23 2 0 14 3 0 5 2 0 19 24 12 16 1 0 42 2 1 16 2 1 52 2 0 9 2 0 3 2 0 12 16 14 13 8 1 9 1 4 39 chain 43102 chr9 141213431 + 5674939 5675448 LTR10F 562 - 0 562 65287 331 3 0 34 0 56 141 chain 535783 chr9 141213431 + 5677852 5684273 L1PA4 6152 - 1 6146 3479 102 0 3 744 0 4 527 0 5 1345 7 0 238 313 0 225 1 0 59 0 20 413 15 0 948 5 0 313 4 19 28 0 3 663 0 1 355 1 15 115 chain 154905 chr9 141213431 + 5685088 5686789 L1PA2 6032 + 4329 6031 23991 284 0 1 1417 chain 68428 chr9 141213431 + 5711583 5712356 L1PA5 6144 - 6 779 49073 773 chain 17804 chr9 141213431 + 5712356 5712559 L1PA5 6144 + 5148 5355 133123 149 0 4 54 chain 514819 chr9 141213431 + 5722576 5728670 L1PA5 6144 - 18 6144 5689 130 1 0 259 1 2 4 1 0 22 0 1 414 1 0 1276 0 3 845 7 6 314 0 1 112 0 5 1305 1 0 48 3 21 187 9 0 122 0 1 30 0 2 236 29 28 355 4 5 243 0 14 135 chain 142322 chr9 141213431 + 5738652 5740418 HERVL-int 5654 - 3872 5654 25758 56 0 2 269 2 0 511 8 15 56 3 8 119 2 1 73 1 0 23 3 0 278 0 6 193 3 1 29 0 5 137 chain 30482 chr9 141213431 + 5740418 5740868 MLT2A1 477 - 0 477 83465 9 0 1 12 0 1 16 25 53 20 7 1 121 3 7 31 1 2 23 0 1 10 5 2 167 chain 38110 chr9 141213431 + 5766380 5767068 L1PB1 5432 - 20 688 71968 8 1 0 11 2 1 22 1 0 24 2 0 14 8 5 19 18 8 4 1 0 16 1 0 43 1 0 16 5 4 50 26 20 9 1 0 24 1 0 7 10 7 47 19 19 18 0 2 17 2 5 177 3 11 60 chain 24577 chr9 141213431 + 5767590 5767876 AluSp 311 - 15 301 107096 286 chain 369647 chr9 141213431 + 5779201 5783959 L1PA7 6471 + 0 6465 11108 139 33 32 36 2 0 5 0 2 152 8 7 27 2 3 28 10 14 155 5 8 146 1 0 129 4 0 98 15 47 180 0 1 10 1 0 59 16 15 15 0 7 203 3 1 414 0 1 226 0 5 94 2 3 375 1 0 39 3 0 127 0 4 82 3 1646 412 4 6 91 0 1 63 1 0 230 0 8 127 0 5 100 0 1 24 0 4 19 0 4 78 1 0 19 0 3 342 3 0 387 3 0 6 chain 22993 chr9 141213431 + 5798250 5798515 AluSp 311 - 46 311 115654 265 chain 25450 chr9 141213431 + 5809029 5809319 AluYf4 310 - 18 310 102459 85 0 1 55 0 1 150 chain 11179 chr9 141213431 + 5822808 5822944 MER85 139 - 0 135 155523 68 2 1 66 chain 11148 chr9 141213431 + 5830129 5830300 MER30 238 + 34 238 155642 59 3 33 23 5 11 30 3 0 48 chain 49653 chr9 141213431 + 5841754 5842392 LTR12_ 688 - 0 688 59273 106 1 34 35 1 0 124 6 0 184 1 25 180 chain 40353 chr9 141213431 + 5882706 5883169 L1PA5 6144 + 5567 6144 68804 81 5 119 377 chain 6228 chr9 141213431 + 5889796 5889867 HSMAR1 1287 + 1216 1287 183337 71 chain 6562 chr9 141213431 + 5890148 5890227 U13_ 108 + 0 79 180764 79 chain 23460 chr9 141213431 + 5961892 5962145 L1PA2 6032 - 2918 3171 111305 253 chain 269415 chr9 141213431 + 5962145 5965069 L1PA2 6032 + 3103 6032 15210 1122 0 4 390 0 1 1412 chain 6135 chr9 141213431 + 5981925 5982019 L1PB1 5432 + 5333 5422 184123 13 2 0 24 1 0 22 2 1 11 1 0 18 chain 3335 chr9 141213431 + 5993456 5993545 LTR33 499 - 60 146 218315 24 28 27 17 1 0 4 1 0 14 chain 31016 chr9 141213431 + 6020020 6020461 LTR7 482 + 0 476 82485 12 0 1 83 20 19 109 0 1 5 0 31 104 1 2 10 5 7 92 chain 114415 chr9 141213431 + 6020469 6022201 HERVH-int 3825 + 0 1774 32967 281 0 2 50 1 0 31 16 17 76 0 61 17 1 0 21 91 32 18 15 0 8 34 126 38 1 0 125 8 9 317 15 0 170 16 4 28 41 25 11 0 6 91 11 6 79 0 4 121 chain 5462 chr9 141213431 + 6035575 6035753 L1PREC2 3366 + 2888 3040 190396 11 12 7 14 7 5 19 44 27 35 6 4 30 chain 80352 chr9 141213431 + 6038177 6039497 L1PB3 3668 - 86 1363 43454 13 7 3 37 15 13 22 2 1 11 22 5 84 12 11 4 0 1 11 4 0 75 1 0 55 19 16 31 3 0 168 1 0 18 3 0 15 2 0 74 0 2 52 1 0 8 6 10 6 4 0 117 0 5 32 19 18 223 14 8 49 23 20 26 0 2 31 chain 65334 chr9 141213431 + 6056403 6057169 L1PA5 6144 - 0 768 50408 11 3 1 41 0 1 71 2 0 572 0 5 66 chain 78665 chr9 141213431 + 6057565 6058420 L1PA3long 6157 - 0 855 44204 855 chain 434992 chr9 141213431 + 6058634 6063772 L1P2 5180 - 6 5173 9195 38 1 0 49 1 0 624 0 3 1523 0 1 822 0 3 678 3 8 318 3 0 152 0 25 51 0 2 85 1 0 5 1 0 272 1 0 8 1 0 260 1 0 46 0 1 45 6 5 143 chain 34806 chr9 141213431 + 6078707 6079199 LTR10D 510 + 0 494 76465 6 1 0 65 5 7 12 3 5 4 1 0 133 14 16 171 2 0 75 chain 37853 chr9 141213431 + 6087347 6087859 LTR10D 510 + 0 510 72341 77 0 2 23 3 0 127 1 0 5 6 9 176 2 0 48 2 1 42 chain 10701 chr9 141213431 + 6095699 6095910 L1PA16 3655 - 2579 2800 157415 23 50 0 11 0 52 36 1 3 77 0 6 13 chain 15680 chr9 141213431 + 6099161 6099361 MLT2A1 477 + 1 198 139329 5 1 0 163 4 1 9 0 1 18 chain 463538 chr9 141213431 + 6099362 6105100 HERVL-int 5654 + 33 5653 8270 26 0 1 10 1 0 97 0 2 426 0 1 194 2 0 58 1 0 855 6 0 867 0 10 90 4 6 5 2 0 56 0 3 91 0 4 240 0 5 302 0 2 706 5 6 73 0 5 582 1 7 9 3 1 314 0 1 44 152 1 85 3 0 8 0 1 187 0 2 36 0 1 32 0 3 165 chain 13278 chr9 141213431 + 6104432 6104584 HERVL-int 5654 + 4320 4472 145876 152 chain 28701 chr9 141213431 + 6105108 6105557 MLT2A1 477 + 7 477 90326 162 4 1 9 0 1 16 37 36 153 31 55 37 chain 2994 chr9 141213431 + 6114785 6114833 MER52A 1651 + 897 936 225139 23 9 0 16 chain 12372 chr9 141213431 + 6115722 6115989 L1PB1 5432 - 10 262 150746 18 7 6 7 1 0 21 1 0 24 25 20 18 36 31 40 1 0 16 2 1 50 chain 545940 chr9 141213431 + 6135847 6141850 L1PA2 6032 + 3 6032 1950 71 0 1 182 1 0 1480 0 1 665 0 26 364 0 1 2444 1 0 39 0 1 748 2 0 6 chain 6658 chr9 141213431 + 6147450 6147545 MER21A 919 - 782 890 180025 16 6 19 73 chain 542491 chr9 141213431 + 6177209 6183222 L1PA3long 6157 - 0 6153 2431 4 0 1 518 1 0 4728 1 129 475 0 10 91 0 1 47 0 1 148 chain 28279 chr9 141213431 + 6193810 6194131 L1PA3long 6157 + 5828 6150 92005 76 1 0 102 0 3 137 1 0 4 chain 14746 chr9 141213431 + 6199358 6199587 MER44A 345 - 1 236 142115 6 0 1 78 16 15 57 1 4 6 0 3 65 chain 448937 chr9 141213431 + 6203264 6208688 L1PA7 6471 + 1030 6465 8791 180 0 4 29 22 41 57 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251 chain 521856 chr9 141213431 + 6376273 6382430 L1PA5 6144 + 3 6139 4975 434 24 18 118 4 3 161 3 2 1458 0 2 965 13 1 151 0 1 356 1 0 3 1 0 1058 2 0 359 1 0 797 0 1 248 chain 32378 chr9 141213431 + 6382448 6384010 MER61-int 3695 - 2449 3695 15698 604 2 0 50 7 11 38 7 6 119 7 8 138 2 1 45 0 1 50 34 12 17 291 0 100 1 0 16 4 0 30 chain 19833 chr9 141213431 + 6385598 6385943 L1MA3 4352 + 312 627 127700 23 0 22 19 65 21 6 5 0 22 4 1 201 chain 288559 chr9 141213431 + 6387422 6390624 L1PA3long 6157 - 4 3215 14119 150 0 1 188 0 1 505 0 1 901 0 2 46 0 4 1412 chain 7692 chr9 141213431 + 6393713 6393868 L1MA3 4352 + 4210 4352 172976 25 4 0 25 2 0 22 2 1 5 1 0 22 5 4 14 1 0 5 5 2 17 chain 6328 chr9 141213431 + 6402683 6402837 MLT1H 522 + 53 208 182563 39 19 19 41 40 41 15 chain 27430 chr9 141213431 + 6416535 6416826 AluYd8 298 - 4 298 94879 116 0 3 175 chain 23744 chr9 141213431 + 6451466 6451770 AluYf4 310 - 13 310 111813 12 13 0 117 3 0 41 5 14 113 chain 222995 chr9 141213431 + 6455151 6458575 L1PA5 6144 - 12 3082 17711 9 1 0 425 608 211 211 1 5 484 0 23 4 1 0 25 0 3 208 0 1 228 1 2 362 0 2 136 4 3 27 3 1 56 0 1 141 1 0 68 14 18 119 0 12 112 12 16 37 12 6 114 chain 11875 chr9 141213431 + 6458575 6458715 L1PA7 6471 + 5813 5961 152722 82 0 8 58 chain 42414 chr9 141213431 + 6458719 6459209 L1PA7 6471 + 5962 6452 66130 490 chain 25443 chr9 141213431 + 6515228 6515639 L1MA1 4479 - 328 719 102483 9 1 0 35 2 0 29 5 4 87 11 4 6 2 0 25 3 0 6 15 15 69 1 0 22 2 0 14 1 0 66 chain 171743 chr9 141213431 + 6519052 6521019 L1PA5 6144 - 0 1956 21851 155 1 0 813 1 4 912 14 1 71 chain 7822 chr9 141213431 + 6526378 6526486 MER30 238 - 0 118 172178 45 0 3 11 0 1 18 1 7 33 chain 3510 chr9 141213431 + 6557057 6557105 L1MA5A 2387 + 2253 2300 215214 43 1 0 4 chain 3785 chr9 141213431 + 6574141 6574222 MER5A 189 + 0 74 210591 12 28 21 41 chain 3983 chr9 141213431 + 6587373 6587423 MIR 256 - 29 79 207638 50 chain 24332 chr9 141213431 + 6608458 6608748 AluY 311 + 0 285 108468 126 5 0 159 chain 22017 chr9 141213431 + 6611313 6611571 AluSc8 310 + 38 300 120155 67 0 1 26 0 3 165 chain 23653 chr9 141213431 + 6612578 6612874 AluSx4 309 + 0 293 112295 24 4 0 28 1 2 239 chain 122701 chr9 141213431 + 6622268 6623631 SVA_D 2077 + 42 2077 30163 15 0 2 8 0 17 677 0 652 31 0 1 4 0 1 620 1 0 7 chain 8561 chr9 141213431 + 6689023 6689125 L1MA7 2200 - 258 360 167955 102 chain 14826 chr9 141213431 + 6694309 6694506 PRIMA4_LTR 623 - 403 623 141857 12 10 33 175 chain 23462 chr9 141213431 + 6707147 6707453 AluSp 311 + 1 300 113304 22 1 0 35 2 1 61 5 0 180 chain 45568 chr9 141213431 + 6731037 6732080 MER57-int 2662 - 6 683 62443 31 3 0 30 24 18 25 8 5 4 1 0 26 2 0 5 21 8 68 351 16 87 12 9 345 chain 44673 chr9 141213431 + 6733601 6734150 MER41A 554 - 0 554 63410 334 5 9 164 0 1 46 chain 68187 chr9 141213431 + 6735759 6736623 THE1B-int 1605 + 1 893 49167 33 0 2 396 0 25 29 0 1 406 chain 11011 chr9 141213431 + 6737163 6737345 L1P4 1494 + 1270 1443 156164 5 1 0 75 1 0 40 2 0 16 10 7 24 2 0 6 chain 29335 chr9 141213431 + 6752051 6752361 AluYg6 310 + 0 309 87381 131 1 0 178 chain 17886 chr9 141213431 + 6762106 6762317 L1PA6 6164 - 5 216 133150 211 chain 117093 chr9 141213431 + 6798252 6799593 SVA_D 2077 - 0 2041 32096 79 8 0 57 0 20 434 0 664 133 0 37 595 10 0 6 3 0 16 chain 154939 chr9 141213431 + 6806926 6808707 SVA_F 1814 + 10 1814 23986 313 0 6 551 2 0 51 0 1 15 5 19 43 0 78 90 1 0 10 79 0 611 0 6 10 chain 6887 chr9 141213431 + 6808008 6808086 SVA_F 1814 + 1011 1089 129898 78 chain 77530 chr9 141213431 + 6820726 6821621 L1PA6 6164 - 2 898 44725 8 1 0 31 0 2 855 chain 26116 chr9 141213431 + 6854254 6854555 AluSp 311 + 8 311 99545 83 0 3 208 1 0 9 chain 25616 chr9 141213431 + 6856739 6857017 AluYb8 318 - 4 279 101643 5 3 0 270 chain 20172 chr9 141213431 + 6864660 6865000 L1M3f 2199 - 954 1302 126609 15 0 2 47 1 0 78 50 59 121 5 3 23 chain 37360 chr9 141213431 + 6872343 6872788 L1P3 4156 - 1164 1610 73016 236 0 2 46 0 1 68 1 0 31 1 0 62 chain 28745 chr9 141213431 + 6888781 6889087 AluYa5 310 - 5 310 90149 179 1 0 126 chain 22348 chr9 141213431 + 6914068 6914338 AluSp 311 - 21 291 118709 270 chain 10856 chr9 141213431 + 6920111 6920337 LTR8A 794 - 154 405 156760 114 25 33 9 2 0 5 3 34 11 28 16 29 chain 123680 chr9 141213431 + 6948489 6949865 SVA_C 1631 - 6 1610 29817 581 0 179 28 1 0 159 0 37 114 0 8 311 1 0 149 0 6 32 chain 38813 chr9 141213431 + 6964103 6964571 L1PA5 6144 - 12 479 71000 141 5 3 5 0 2 176 1 0 140 chain 18038 chr9 141213431 + 6964592 6964801 AluY 311 + 93 302 132765 30 1 0 9 0 1 169 chain 59494 chr9 141213431 + 7024341 7025015 L1PA4 6152 - 6 682 53112 43 0 1 627 0 1 4 chain 4894 chr9 141213431 + 7083155 7083215 Tigger4a 237 - 1 61 196341 60 chain 15749 chr9 141213431 + 7139810 7140023 MER50 708 - 24 235 139113 36 1 0 165 1 0 10 chain 11012 chr9 141213431 + 7141179 7141318 MER107 203 + 0 141 156163 106 0 2 33 chain 4513 chr9 141213431 + 7152471 7152526 L1MB3 1562 + 1363 1418 200634 55 chain 512230 chr9 141213431 + 7155360 7161460 L1PA6 6164 - 2 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13 6 10 113 0 1 23 0 1 185 0 16 82 9 2 43 0 1 235 0 2 293 14 0 68 9 0 217 4 1 142 0 1 5 1 0 85 0 2 6 0 1 55 0 4 12 1 0 4 0 4 16 3 62 107 1 0 178 0 5 307 26 25 98 chain 238471 chr9 141213431 + 7574403 7577405 L1PA8 5853 - 0 2991 16853 93 1 0 16 1 0 65 5 4 67 2 0 35 10 9 47 6 0 47 1 0 11 0 1 359 0 3 88 0 1 16 10 14 90 1 0 116 0 1 311 29 14 72 0 2 672 2 1 310 3 1 49 0 1 27 0 3 345 0 4 17 3 7 26 3 1 25 2 0 11 0 1 8 chain 4479 chr9 141213431 + 7578492 7578611 MER58A 224 - 29 123 201029 27 22 9 37 5 4 9 11 0 8 chain 30895 chr9 141213431 + 7586780 7587214 MER9a3 513 - 42 513 82688 22 5 3 12 6 7 122 1 11 20 0 18 222 0 8 6 1 3 17 chain 146151 chr9 141213431 + 7610722 7613142 L1PB1 5432 - 12 2089 25137 12 4 3 14 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 25 12 15 1 0 45 7 6 9 2 1 52 2 0 10 11 10 14 12 11 8 5 0 12 5 0 134 0 1 154 0 10 181 0 2 48 0 1 551 6 1 15 40 30 12 12 11 216 8 11 19 6 4 90 305 0 263 0 1 5 chain 35804 chr9 141213431 + 7616119 7616560 MLT2A2 560 - 100 560 75127 43 0 11 178 0 8 220 chain 53860 chr9 141213431 + 7619820 7620843 MER4E1 777 - 7 777 56450 134 0 1 84 7 15 70 1 2 27 0 1 71 0 26 7 1 5 142 295 0 165 1 2 18 chain 5405 chr9 141213431 + 7624268 7624348 MADE1 96 + 0 96 190937 30 3 19 47 chain 488644 chr9 141213431 + 7626570 7632664 L1PA7 6471 + 380 6470 7419 32 16 1 60 1 0 5 0 1 527 0 24 1069 3 5 411 5 7 110 15 0 257 0 4 108 0 2 76 1 0 4 5 6 370 0 1 24 15 13 48 1 5 31 1 0 208 0 1 214 10 9 410 26 0 201 11 12 210 0 1 102 1 0 257 1 0 254 9 14 62 0 1 88 0 5 72 2 1 374 0 5 52 1 2 195 0 1 134 1 0 4 chain 8633 chr9 141213431 + 7645358 7645476 L1PA17 2846 - 1954 2073 167573 26 2 3 90 chain 25192 chr9 141213431 + 7658088 7658390 AluSc 308 + 3 305 103784 142 3 4 106 1 0 50 chain 70682 chr9 141213431 + 7667006 7667772 L1PA2 6032 - 0 766 48073 766 chain 72286 chr9 141213431 + 7667779 7668578 L1P1 4361 + 3468 4266 47341 683 1 0 115 chain 28220 chr9 141213431 + 7679912 7680215 AluYb8 318 + 15 318 92234 303 chain 22367 chr9 141213431 + 7685020 7685286 AluSp 311 - 6 273 118640 185 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chain 5314 chr9 141213431 + 7819986 7820052 L1MB8 1703 + 1524 1590 191879 66 chain 103627 chr9 141213431 + 7835778 7837044 L1PA8A 6298 - 8 1294 35821 377 0 6 327 0 1 88 0 3 59 0 1 363 0 9 52 chain 31175 chr9 141213431 + 7846256 7853151 MLT2A2 560 - 0 560 82211 147 2 13 19 8 0 56 0 7 10 6345 0 308 chain 23103 chr9 141213431 + 7852554 7852843 MER57A1 433 + 0 288 115128 280 1 0 8 chain 385005 chr9 141213431 + 7863204 7867513 L1HS 6032 - 1061 5412 10608 397 0 1 1459 10 52 5 1 0 2437 chain 92673 chr9 141213431 + 7867516 7868552 L1PA3long 6157 + 5111 6149 38761 434 7 9 595 chain 384951 chr9 141213431 + 7880652 7886062 L1PA8 5853 + 479 5853 10610 44 103 84 29 6 0 8 13 20 65 19 12 5 1 0 10 9 9 17 1 4 380 0 1 4 13 32 123 17 18 183 4 6 180 4 3 64 3 6 117 5 6 393 21 0 350 0 1 128 41 1 100 5 0 25 3 0 12 0 2 40 7 10 188 0 1 61 3 0 265 0 1 42 0 1 61 1 0 111 0 3 54 1 3 430 1 0 6 1 0 96 2 7 136 8 25 215 0 2 5 1 0 325 0 2 290 1 0 81 0 2 32 0 3 145 1 0 44 2 0 71 1 0 5 19 18 38 2 1 15 7 6 91 chain 10700 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chain 3106 chr9 141213431 + 8121504 8121566 L1MA4 2864 + 2776 2830 222807 33 16 8 13 chain 57582 chr9 141213431 + 8197430 8198112 L1PA7 6471 + 5787 6469 54193 682 chain 492025 chr9 141213431 + 8199009 8204592 L1PA4 6152 - 6 6146 7270 365 2 14 285 1 5 812 0 1 303 0 12 244 0 2 351 0 1 448 1 0 6 0 1 2673 0 525 92 chain 3120 chr9 141213431 + 8230442 8230475 HSMAR1 1287 - 1254 1287 222548 33 chain 4164 chr9 141213431 + 8242727 8243040 MLT1C 463 - 95 406 205043 23 244 242 46 chain 20020 chr9 141213431 + 8276700 8277033 THE1B 368 - 0 368 127083 39 1 3 83 35 45 20 7 6 62 1 10 45 0 15 40 chain 29908 chr9 141213431 + 8290908 8291228 AluYb8 318 + 0 318 85072 132 2 0 186 chain 7573 chr9 141213431 + 8301721 8301823 MER2 342 - 68 169 173708 52 1 0 49 chain 464557 chr9 141213431 + 8324107 8330234 L1PA7 6471 - 3 6370 8235 10 1 4 837 0 3 265 19 18 41 0 7 82 0 1 8 3 2 125 0 8 235 0 4 71 1 0 67 0 12 659 0 1 147 0 12 271 0 25 159 0 4 237 0 1 7 6 0 96 0 1 50 1 0 12 0 1 22 4 1 228 9 15 10 0 16 55 1 2 111 3 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141213431 + 8667449 8667754 Tigger4b 360 + 29 290 152192 12 11 4 55 16 39 47 94 34 70 chain 4116 chr9 141213431 + 8735487 8735555 MER5A 189 - 116 185 205694 14 10 11 44 chain 4169 chr9 141213431 + 8739435 8739534 MER3 215 + 106 215 204979 18 28 44 7 6 0 40 chain 55384 chr9 141213431 + 8747250 8747885 HERV17-int 4347 + 3712 4347 55469 635 chain 27596 chr9 141213431 + 8748196 8748523 LTR17 781 + 0 326 94355 119 0 9 171 10 0 27 chain 46789 chr9 141213431 + 8752077 8752633 MER41A 554 + 0 554 61382 419 1 0 22 1 0 113 chain 26106 chr9 141213431 + 8788253 8788574 AluSp 311 - 4 311 99593 25 14 0 282 chain 44357 chr9 141213431 + 8800287 8800841 MER41A 554 + 0 554 63744 165 1 0 229 0 1 159 chain 22248 chr9 141213431 + 8821689 8821952 AluSg7 307 - 33 297 119129 142 0 1 121 chain 24908 chr9 141213431 + 8862772 8863076 L1PA3long 6157 + 5850 6157 105295 153 4 0 2 0 7 145 chain 39122 chr9 141213431 + 8889486 8890102 L1PB1 5432 - 11 597 70570 20 1 0 8 1 0 25 1 0 22 2 0 14 9 6 17 9 0 13 2 0 15 1 0 41 8 7 12 2 1 48 19 14 14 1 0 29 5 0 8 1 4 268 chain 16628 chr9 141213431 + 8920484 8920710 MER30 238 - 0 238 136587 111 4 20 66 12 8 33 chain 331098 chr9 141213431 + 8927230 8933327 L1PA7 6471 - 7 6471 12158 132 0 3 5 5 16 177 0 1 432 0 2 78 1 4 521 0 12 406 0 4 37 6 5 629 0 1 18 1976 0 255 1 3 170 0 4 218 13 13 151 0 2296 255 0 1 203 0 4 408 chain 147567 chr9 141213431 + 8929969 8931644 L1PA5 6144 - 7 1682 24949 246 1 0 380 2 1 4 0 1 79 4 5 959 chain 66285 chr9 141213431 + 8967775 8968531 L1PA5 6144 - 21 775 49963 92 1 0 146 6 5 511 chain 9494 chr9 141213431 + 8991247 8991386 MER39 703 + 531 671 163103 15 1 0 4 9 11 110 chain 44346 chr9 141213431 + 9015150 9015707 MER41A 554 + 0 554 63764 39 7 8 477 4 0 30 chain 15206 chr9 141213431 + 9021918 9022139 L1PA8 5853 + 5636 5853 140760 42 13 11 51 2 1 19 2 1 92 chain 28560 chr9 141213431 + 9058442 9058748 AluYf4 310 - 4 310 90922 306 chain 82555 chr9 141213431 + 9075413 9076399 L1PA5 6144 - 0 1007 42515 149 0 1 647 10 30 180 chain 3143 chr9 141213431 + 9078758 9078792 LTR16A 446 - 175 209 222114 34 chain 101494 chr9 141213431 + 9080720 9081915 L1PA7 6471 - 2724 3917 36399 194 0 4 52 2 1 855 5 0 87 chain 211557 chr9 141213431 + 9081916 9084563 L1PA7 6471 + 3762 6467 18393 22 0 1 239 5 9 150 0 2 21 9 11 121 5 57 100 7 8 697 0 1 28 3 1 197 0 1 194 2 0 7 5 6 10 1 0 4 0 1 381 0 1 265 2 0 11 16 17 121 0 1 14 4 0 6 chain 7524 chr9 141213431 + 9094194 9094305 L1PB2 3958 + 3723 3830 174016 31 2 0 14 1 0 7 1 0 55 chain 29080 chr9 141213431 + 9134055 9134369 AluYb8 318 - 2 315 88644 198 1 0 115 chain 3454 chr9 141213431 + 9168088 9168234 MER58A 224 + 50 210 216119 37 90 104 19 chain 47953 chr9 141213431 + 9180073 9180607 L1PA4 6152 + 5617 6151 60519 534 chain 24456 chr9 141213431 + 9190245 9190557 THE1A 353 + 0 353 107775 181 0 1 87 0 40 44 chain 41677 chr9 141213431 + 9206434 9206975 MLT2A2 560 + 0 560 67060 169 4 0 198 0 12 27 17 28 126 chain 11336 chr9 141213431 + 9231736 9231870 L1PA6 6164 - 2 136 154932 134 chain 133539 chr9 141213431 + 9241600 9243165 L1P1 4361 - 1974 3543 27260 938 0 4 234 15 16 161 1 0 216 chain 227401 chr9 141213431 + 9243165 9245758 L1PA4 6152 + 3512 6130 17458 101 0 1 324 1 2 411 0 4 647 0 1 626 1 19 482 chain 14337 chr9 141213431 + 9248990 9249405 MSTB 430 + 0 416 143435 126 119 112 21 91 99 58 chain 2477 chr9 141213431 + 9252815 9252848 MER34C_ 573 + 485 516 233342 5 2 0 26 chain 206245 chr9 141213431 + 9323699 9326077 L1PA6 6164 - 5 2384 18772 184 0 2 658 1 0 1535 chain 14910 chr9 141213431 + 9327804 9327994 MER30 238 - 0 202 141603 116 4 15 8 0 1 62 chain 18647 chr9 141213431 + 9338694 9338919 L1PA7 6471 - 2 226 131094 22 1 0 202 chain 64850 chr9 141213431 + 9342712 9343527 L1PA7 6471 - 1 803 50633 160 1 0 17 21 0 261 0 2 128 3 5 19 0 1 15 0 3 93 0 1 97 chain 22437 chr9 141213431 + 9344160 9344493 L1PA8 5853 + 5527 5853 118313 37 1 0 46 2 0 56 1 2 12 1 0 14 2 0 46 2 1 15 6 5 92 chain 368203 chr9 141213431 + 9368762 9372891 L1PA4 6152 - 1 4282 11152 54 0 4 46 5 0 324 0 153 269 1 0 1622 4 3 115 0 1 1473 1 2 215 chain 30123 chr9 141213431 + 9413097 9413413 AluYb8 318 - 2 318 84409 316 chain 524556 chr9 141213431 + 9425928 9432047 L1PA5 6144 + 0 6128 4721 575 0 1 559 0 2 32 9 0 442 0 1 644 0 2 55 2 1 135 0 9 717 0 1 58 0 1 38 1 2 1353 1 0 23 0 1 1153 0 1 322 chain 20451 chr9 141213431 + 9442066 9442294 7SLRNA 320 + 7 235 125755 228 chain 27477 chr9 141213431 + 9445426 9445801 THE1C 375 - 0 375 94728 188 0 1 65 3 0 6 5 6 25 4 5 79 chain 24972 chr9 141213431 + 9450148 9450507 L1PB2 3958 - 124 480 104942 15 0 2 42 2 1 18 24 22 55 1 0 139 1 0 62 chain 29597 chr9 141213431 + 9472189 9472502 AluYb8 318 - 5 318 86217 313 chain 43801 chr9 141213431 + 9487058 9487555 L1PA4 6152 - 0 494 64446 16 3 0 478 chain 19597 chr9 141213431 + 9555992 9556402 Tigger2 2703 - 0 432 128393 17 90 94 15 0 4 120 1 5 57 10 11 36 3 4 35 3 12 18 1 0 4 chain 39344 chr9 141213431 + 9594287 9594748 L1PB1 5432 - 968 1433 70261 254 0 1 102 0 3 105 chain 48699 chr9 141213431 + 9594754 9595853 L1PB1 5432 + 4489 5346 59961 137 6 0 339 1 0 14 417 201 40 3 2 14 1 0 45 1 0 15 14 1 30 2 0 5 2 1 13 chain 9132 chr9 141213431 + 9616843 9616946 L1P3 4156 - 1021 1126 164896 93 0 2 10 chain 46359 chr9 141213431 + 9641540 9642650 PABL_A 660 + 29 653 61722 55 0 9 87 1 0 85 12 10 4 0 1 114 0 1 32 494 0 226 chain 45414 chr9 141213431 + 9641935 9642423 L1PA2 6032 + 5539 6027 62576 488 chain 30558 chr9 141213431 + 9653060 9653378 AluYb8 318 + 0 318 83287 318 chain 25083 chr9 141213431 + 9657249 9657602 L1PA7 6471 + 6104 6461 104389 33 5 8 157 1 0 7 13 15 137 chain 110846 chr9 141213431 + 9676136 9677371 L1PA4 6152 - 9 1243 33988 608 0 1 233 1 0 197 1 0 195 chain 97929 chr9 141213431 + 9677371 9678478 L1PA4 6152 + 3791 4899 37172 686 1 2 420 chain 5831 chr9 141213431 + 9687568 9687635 L1PA3long 6157 + 6090 6157 186861 67 chain 144199 chr9 141213431 + 9715857 9717466 L1PA3long 6157 - 2 1615 25441 841 0 4 768 chain 13822 chr9 141213431 + 9731462 9731625 L1PA5 6144 - 1 164 145171 163 chain 13637 chr9 141213431 + 9731625 9731782 L1PA5 6144 + 5796 5957 145829 62 0 4 95 chain 22000 chr9 141213431 + 9738003 9738254 L1PA4 6152 + 5892 6143 120226 251 chain 58969 chr9 141213431 + 9741451 9742221 L1PA6 6164 - 2 816 53415 8 8 0 9 1 0 601 0 52 92 9 10 42 chain 56650 chr9 141213431 + 9769642 9770302 L1PA7 6471 - 32 693 54749 302 0 1 358 chain 10203 chr9 141213431 + 9786664 9786781 L1PA5 6144 + 6025 6142 159608 117 chain 13646 chr9 141213431 + 9806451 9806641 LTR7B 505 + 180 425 145795 49 1 57 4 1 0 117 0 1 4 1 0 13 chain 7093 chr9 141213431 + 9810005 9810286 Tigger2 2703 + 2272 2595 176813 48 153 190 19 15 20 46 chain 168234 chr9 141213431 + 9826734 9828656 L1PA4 6152 + 4216 6146 22259 140 0 4 230 3 0 714 0 4 553 0 3 282 chain 71265 chr9 141213431 + 9833199 9834237 MER11C 1089 - 38 1089 47821 13 16 17 101 1 0 56 0 1 125 0 1 38 1 0 4 1 5 86 75 71 148 2 1 61 8 10 5 0 2 50 0 9 247 chain 126679 chr9 141213431 + 9837770 9839183 L1PA3long 6157 - 0 1416 28897 846 1 5 91 2 1 473 chain 55893 chr9 141213431 + 9839183 9839801 L1PA3long 6157 + 4126 4744 54938 618 chain 15498 chr9 141213431 + 9840611 9840790 AluSc 308 + 129 308 139904 179 chain 4199 chr9 141213431 + 9850677 9850813 L1MA8 2339 - 81 211 204543 25 3 1 34 59 55 15 chain 7162 chr9 141213431 + 9888984 9889363 L1MA8 2339 + 1999 2326 176322 10 1 0 75 266 215 27 chain 22363 chr9 141213431 + 9893169 9893456 L1PA13 3608 + 761 1046 118661 126 1 0 12 1 0 147 chain 4317 chr9 141213431 + 9900896 9900943 MSTB-int 1649 - 1601 1648 203008 47 chain 536933 chr9 141213431 + 9931214 9937235 L1PA3long 6157 + 0 6157 3321 152 0 1 615 8 136 2287 1 0 41 0 4 724 0 2 287 4 1 42 0 2 377 2 1 638 7 11 836 chain 49414 chr9 141213431 + 9992358 9992962 L1PA5 6144 + 5542 6140 59444 438 3 4 4 1 0 141 6 0 11 chain 29056 chr9 141213431 + 10018538 10018848 AluYa5 310 - 2 310 88733 182 2 0 126 chain 89128 chr9 141213431 + 10018916 10019930 L1PA4 6152 + 5129 6143 39951 165 0 1 707 5 4 137 chain 65631 chr9 141213431 + 10024632 10025345 L1PA4 6152 - 1 714 50279 713 chain 120931 chr9 141213431 + 10028340 10029854 THE1B-int 1605 + 0 1599 30716 432 0 25 15 0 37 19 0 1 146 12 22 508 0 12 382 chain 26591 chr9 141213431 + 10031253 10031625 MLT2A1 477 + 5 384 97695 12 0 4 25 0 1 95 2 3 23 1 5 142 1 2 6 1 0 48 3 0 13 chain 10587 chr9 141213431 + 10034018 10034153 L1P4 1494 + 676 813 157883 130 0 2 5 chain 133884 chr9 141213431 + 10096375 10097869 L1PA4 6152 - 636 2132 27244 538 1 3 955 chain 56836 chr9 141213431 + 10097869 10098503 L1PA4 6152 + 5517 6151 54636 634 chain 29219 chr9 141213431 + 10111229 10111537 AluYa5 310 - 2 310 87962 308 chain 4679 chr9 141213431 + 10117398 10117466 MLT1C 463 - 44 109 198767 8 3 0 57 chain 107978 chr9 141213431 + 10136557 10137714 L1HS 6032 + 4875 6032 34725 1157 chain 34159 chr9 141213431 + 10140329 10140721 L1PA3long 6157 + 3224 3617 77402 296 0 1 96 chain 230795 chr9 141213431 + 10140723 10143283 L1PA3long 6157 + 3618 6156 17266 437 1 0 710 22 0 1099 0 1 291 chain 35808 chr9 141213431 + 10150234 10150668 L1PA5 6144 + 5707 6143 75121 340 0 2 94 chain 6152 chr9 141213431 + 10224362 10224440 L1PA2 6032 - 3 82 183967 16 0 1 62 chain 70111 chr9 141213431 + 10229066 10229862 L1PA4 6152 + 5355 6151 48347 796 chain 4964 chr9 141213431 + 10256472 10256550 Tigger3b 1229 - 1143 1222 195549 4 0 1 26 6 6 42 chain 494085 chr9 141213431 + 10300218 10306428 L1PA7 6471 + 0 6464 7167 31 0 256 217 17 8 6 0 4 22 0 2 839 0 3 12 15 12 280 2 1 473 0 5 310 0 2 154 1 3 257 0 3 415 0 1 164 9 6 7 0 1 774 0 1 187 4 5 185 8 6 6 0 2 11 6 10 180 0 1 87 1 0 125 1 5 187 2 0 172 14 1 182 2 0 700 2 0 143 chain 150602 chr9 141213431 + 10342982 10344842 L1PA6 6164 - 2 1815 24526 4 1 0 4 0 1 574 0 1 176 1 0 109 33 4 97 22 1 477 1 0 65 1 0 184 0 5 111 chain 58641 chr9 141213431 + 10345282 10346014 L1PA7 6471 - 5 751 53612 34 0 10 114 0 1 175 1 2 234 0 1 11 0 1 163 chain 31317 chr9 141213431 + 10377298 10377667 L1PA5 6144 - 6 374 81959 246 2 1 121 chain 25908 chr9 141213431 + 10395108 10395425 L1PA5 6144 - 6 319 100387 54 1 0 252 3 0 7 chain 12561 chr9 141213431 + 10420976 10421175 MER30 238 - 8 238 150006 36 3 0 6 0 1 62 2 18 61 14 31 15 chain 120189 chr9 141213431 + 10422035 10423463 L1PA6 6164 + 4728 6161 30991 74 0 1 175 6 7 186 0 1 93 9 14 36 1 0 839 2 0 7 chain 111748 chr9 141213431 + 10431224 10432449 L1PA2 6032 + 4807 6032 33741 702 0 1 186 1 0 336 chain 106771 chr9 141213431 + 10449042 10450256 SVA_B 1603 + 6 1602 35041 12 0 11 7 1 8 522 0 3 58 0 361 614 chain 61852 chr9 141213431 + 10458980 10459828 L1PA7 6471 - 80 927 51974 77 5 6 28 8 0 8 64 72 162 2 0 328 4 0 86 0 4 76 chain 50043 chr9 141213431 + 10467867 10468487 L1PA7 6471 + 5678 6297 58990 32 3 1 333 0 1 252 chain 13713 chr9 141213431 + 10468487 10468649 L1PA7 6471 + 6299 6461 145563 162 chain 14268 chr9 141213431 + 10470858 10471046 L1PA7 6471 + 6017 6210 143657 31 0 1 10 0 1 76 2 3 20 0 1 22 0 1 27 chain 8531 chr9 141213431 + 10471046 10471142 L1PA7 6471 + 6211 6307 168126 96 chain 10791 chr9 141213431 + 10471170 10471305 L1PA7 6471 + 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10743605 L1PA7 6471 + 5634 6466 49598 66 0 1 471 9 10 255 0 1 4 4 3 21 chain 18745 chr9 141213431 + 10743632 10743858 AluY 311 + 26 252 130834 226 chain 40159 chr9 141213431 + 10747799 10748283 L1PA7 6471 + 5960 6446 69098 353 1 3 130 chain 58417 chr9 141213431 + 10750119 10750772 L1PA4 6152 - 0 655 53733 6 0 2 647 chain 99727 chr9 141213431 + 10750787 10751915 L1P1 4361 + 3205 4328 36851 946 2 1 85 3 0 68 1 0 23 chain 29707 chr9 141213431 + 10763057 10763371 AluYb8 318 - 4 318 85804 314 chain 43140 chr9 141213431 + 10763453 10763961 L1PA7 6471 - 11 518 65242 323 1 0 184 chain 5290 chr9 141213431 + 10763961 10764023 L1P1 4361 + 3569 3631 192112 62 chain 72087 chr9 141213431 + 10769684 10770505 L1PA5 6144 + 5323 6144 47441 59 0 1 508 1 0 253 chain 530617 chr9 141213431 + 10778293 10784424 L1PA5 6144 + 3 6139 4121 484 0 4 89 0 2 6 1 2 158 7 2 940 0 1 196 0 1 41 2 0 416 1 0 748 0 1 63 2 1 12 1 0 338 0 1 835 0 4 729 5 6 227 0 3 530 6 1 152 0 1 142 chain 22778 chr9 141213431 + 10788711 10788969 L1PA5 6144 - 0 258 116687 258 chain 46313 chr9 141213431 + 10788969 10789503 L1PA5 6144 + 5353 5887 61763 534 chain 47561 chr9 141213431 + 10797004 10797580 L1PA7 6471 - 1 571 60799 8 6 0 562 chain 21236 chr9 141213431 + 10815213 10815505 L1PA16 3655 + 3092 3382 123074 28 5 6 78 1 0 86 2 0 92 chain 18444 chr9 141213431 + 10822068 10822274 L1PA4 6152 - 0 211 131657 6 0 5 200 chain 12018 chr9 141213431 + 10836427 10836566 LTR12C 1709 + 932 1071 152128 139 chain 296409 chr9 141213431 + 10845737 10851765 L1PA3long 6157 - 15 3353 13624 55 0 2 66 0 7 648 2703 0 1864 0 4 692 chain 43779 chr9 141213431 + 10846641 10847156 L1PA3long 6157 - 929 1445 64481 132 1 2 382 chain 73644 chr9 141213431 + 10851765 10852564 L1PA3long 6157 + 5358 6157 46712 799 chain 34899 chr9 141213431 + 10857425 10857820 L1PA4 6152 + 5756 6151 76341 395 chain 43796 chr9 141213431 + 10877006 10877555 MLT2A2 560 - 0 560 64461 147 3 14 10 1 0 50 0 1 338 chain 242792 chr9 141213431 + 10885378 10888548 HERVH-int 3825 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chain 70821 chr9 141213431 + 10976652 10977572 L1PBa 3878 + 1343 2268 48004 104 0 2 98 0 1 4 1 0 65 3 0 5 7 10 225 0 1 89 0 1 133 0 1 186 chain 192784 chr9 141213431 + 10981068 10983283 L1PA4 6152 - 1 2226 19787 152 2 1 198 0 1 301 0 1 477 3 2 40 0 1 731 3 0 219 0 12 89 chain 47221 chr9 141213431 + 10988940 10989467 L1PA4 6152 + 5302 5829 61028 527 chain 27489 chr9 141213431 + 10989467 10989777 L1PA4 6152 + 5831 6141 94686 310 chain 125560 chr9 141213431 + 10993018 10994607 THE1A-int 1579 + 0 1579 29225 474 5 6 497 14 3 599 chain 40411 chr9 141213431 + 11013568 11014078 MER9a3 513 - 0 513 68718 75 4 5 104 0 7 6 7 0 296 0 2 18 chain 46137 chr9 141213431 + 11029042 11029586 L1P1 4361 + 3800 4341 61904 351 1 0 154 1 0 23 2 1 12 chain 15464 chr9 141213431 + 11040582 11040827 MER1B 344 + 92 339 140002 129 3 0 46 15 19 24 8 9 20 chain 26576 chr9 141213431 + 11102273 11102669 LTR7B 505 - 10 505 97740 41 14 13 89 0 41 21 20 1 4 1 0 33 12 81 53 0 10 108 chain 26735 chr9 141213431 + 11112106 11112448 L1MA1 4479 + 2127 2468 97201 47 2 1 293 chain 34021 chr9 141213431 + 11120765 11121185 L1PA6 6164 - 2 419 77591 8 4 0 306 0 1 102 chain 24612 chr9 141213431 + 11121284 11121641 L1PA8 5853 + 5495 5853 106927 61 18 17 35 2 0 38 5 13 23 1 0 6 1 0 52 2 1 19 1 0 93 chain 129441 chr9 141213431 + 11196697 11198274 LTR12C 1709 + 0 1709 28215 262 4 5 19 0 13 518 21 139 155 1 0 6 2 0 107 0 4 314 1 0 167 chain 149558 chr9 141213431 + 11214118 11215798 L1PA5 6144 - 268 1942 24681 499 1 0 602 7 2 571 chain 21405 chr9 141213431 + 11215798 11216047 L1PA5 6144 + 5892 6141 122489 249 chain 43596 chr9 141213431 + 11223594 11224073 L1PA3long 6157 + 5678 6157 64688 479 chain 15828 chr9 141213431 + 11228094 11228271 L1PA3long 6157 + 5980 6157 138857 177 chain 49084 chr9 141213431 + 11239917 11240604 LTR12_ 688 - 19 688 59683 502 42 0 19 0 66 24 41 0 36 1 0 22 chain 10690 chr9 141213431 + 11245493 11245702 L1PA11 4918 - 409 585 157454 16 3 0 6 4 0 13 2 0 67 43 19 55 chain 206615 chr9 141213431 + 11247653 11249992 L1PA4 6152 + 3810 6141 18747 970 10 2 1359 chain 277732 chr9 141213431 + 11254876 11259384 HERVK22-int 3844 - 0 3843 14762 93 2 1 82 816 198 5 1 0 27 14 10 18 64 47 7 1 0 10 2 0 3 2 0 5 2 0 7 2 0 10 27 16 13 1 0 45 14 9 40 2 0 20 1 0 34 1 0 20 1 0 6 1 0 67 5 4 713 0 1 56 1 0 5 0 2 46 5 1 370 0 1 515 1 0 266 0 1 513 1 0 375 0 11 170 chain 7551 chr9 141213431 + 11265467 11265559 MER44A 345 + 105 197 173867 92 chain 283960 chr9 141213431 + 11285871 11289042 L1PA4 6152 + 2990 6152 14418 967 0 2 821 13 2 1370 chain 3978 chr9 141213431 + 11299996 11300053 MER61D 487 - 0 60 207713 22 2 5 33 chain 121814 chr9 141213431 + 11300483 11302032 THE1A-int 1579 - 20 1579 30439 68 0 1 518 8 11 314 0 8 188 0 1 159 5 1 58 0 1 231 chain 18319 chr9 141213431 + 11321829 11322046 L1PA7 6471 - 2 219 132026 217 chain 11307 chr9 141213431 + 11325094 11325220 SVA_A 1864 + 1737 1863 155040 126 chain 5857 chr9 141213431 + 11360674 11360772 L1MA9 1812 - 1651 1754 186611 29 0 9 39 6 4 12 2 0 10 chain 27773 chr9 141213431 + 11361106 11361466 MLT2A2 560 + 29 399 93792 292 1 0 4 13 24 50 chain 10996 chr9 141213431 + 11365874 11366001 L1PA3long 6157 + 6025 6152 156220 127 chain 25353 chr9 141213431 + 11421307 11421609 AluSc 308 - 6 308 102932 302 chain 113537 chr9 141213431 + 11475725 11477179 L1PA8 5853 + 4396 5853 33216 219 0 1 385 22 10 327 0 1 225 1 0 23 0 2 19 2 0 48 6 23 9 1 0 52 2 1 22 1 0 90 chain 489359 chr9 141213431 + 11479758 11486080 L1PA7 6471 - 7 6338 7393 5 3 0 469 0 3 25 0 2 258 0 2 81 1 0 296 1 0 5 0 1 97 1 0 64 10 6 428 0 3 284 0 1 114 0 2 57 0 1 257 2 0 3 2 0 163 38 1 25 7 11 273 0 16 14 13 13 56 0 1 4 1 0 165 1 2 35 0 1 478 6 10 93 9 0 453 0 1 53 0 2 95 2 0 9 0 3 101 0 7 18 1 18 182 22 23 394 2 1 534 1 2 221 29 16 25 0 1 73 2 3 49 0 1 110 13 23 16 1 0 7 1 2 25 19 18 20 chain 5141 chr9 141213431 + 11487023 11487183 MER31B 477 - 305 477 193658 28 85 97 47 chain 44122 chr9 141213431 + 11529374 11529901 L1PA7 6471 - 2 529 64052 527 chain 161636 chr9 141213431 + 11543537 11545386 L1PA5 6144 + 4296 6141 23109 262 1 0 57 2 3 1122 4 1 85 2 1 314 chain 4458 chr9 141213431 + 11563805 11563856 L1MA3 4352 - 875 926 201250 51 chain 9857 chr9 141213431 + 11570737 11570855 L1P2 5180 - 4503 4621 160871 118 chain 190840 chr9 141213431 + 11570855 11573063 L1PA5 6144 + 3928 6144 19965 414 3 7 279 3 0 795 1 0 21 0 7 82 0 1 610 chain 50158 chr9 141213431 + 11584854 11585750 L1PB1 5432 - 21 886 58899 7 1 0 13 1 0 21 1 0 24 2 0 15 7 4 18 24 13 15 1 0 39 6 5 16 2 1 15 1 0 4 14 15 11 26 20 9 1 0 7 4 1 16 8 5 10 6 13 447 36 33 68 chain 8645 chr9 141213431 + 11587847 11587944 L1PA3long 6157 + 6060 6157 167505 97 chain 64277 chr9 141213431 + 11589689 11590709 L1PB1 5432 + 4203 5422 50887 81 0 2 159 0 1 4 3 0 177 1 0 105 0 60 41 0 1 116 9 18 15 42 193 44 2 1 10 6 5 45 1 0 11 36 26 9 2 0 4 1 0 15 2 0 24 1 0 14 8 7 13 1 0 18 chain 9288 chr9 141213431 + 11612024 11612138 HSMAR1 1287 - 1170 1284 164124 114 chain 20239 chr9 141213431 + 11615624 11615911 MER4D1 891 + 0 310 126416 28 1 0 117 1 2 46 12 7 38 0 28 44 chain 55866 chr9 141213431 + 11615912 11616650 MER4E1 777 - 0 749 55203 95 3 0 138 1 7 86 0 1 118 0 1 52 0 1 119 5 10 121 chain 143448 chr9 141213431 + 11627987 11629581 L1PA3long 6157 - 0 1594 25568 761 0 1 760 1 0 72 chain 4272 chr9 141213431 + 11629590 11629640 THE1D-int 1627 + 1516 1566 203604 50 chain 310685 chr9 141213431 + 11633961 11640328 L1PA5 6144 - 12 3674 12977 827 0 1 540 8 9 127 1 0 723 0 1 379 1 0 3 2713 0 91 0 3 143 0 1 81 1 2 511 0 3 179 1 0 38 chain 2012 chr9 141213431 + 11636592 11636616 L1PA5 6144 - 2643 2667 238505 24 chain 31633 chr9 141213431 + 11636617 11636976 L1PA5 6144 + 3052 3411 81429 359 chain 10902 chr9 141213431 + 11636981 11637148 L1PA5 6144 - 320 473 156579 12 3 1 83 13 1 56 chain 71455 chr9 141213431 + 11637148 11637968 L1PA5 6144 - 476 1295 47718 374 1 0 445 chain 19853 chr9 141213431 + 11637968 11638194 L1PA5 6144 - 1296 1522 127644 226 chain 89823 chr9 141213431 + 11638195 11639283 L1PA5 6144 - 1522 2610 39715 1088 chain 50448 chr9 141213431 + 11644660 11645241 L1PA5 6144 - 0 582 58681 148 1 0 5 0 2 427 chain 376691 chr9 141213431 + 11665271 11669580 L1PA3long 6157 - 8 4326 10857 331 1 0 350 0 1 76 0 1 488 0 1 556 2 0 5 1 4 1143 4 5 186 3 5 208 1 0 441 0 2 201 2 4 310 chain 12119 chr9 141213431 + 11679782 11680006 L1PA13 3608 + 3245 3458 151745 28 2 0 39 29 27 47 1 0 10 2 0 47 2 0 5 2 0 10 chain 388208 chr9 141213431 + 11718692 11723115 L1PA4 6152 - 11 4440 10508 435 2 0 227 0 1 738 1 3 389 0 4 20 0 1 262 0 1 396 1 0 498 0 1 580 1 0 873 chain 26562 chr9 141213431 + 11733756 11734034 AluYa5 310 + 27 305 97798 278 chain 22857 chr9 141213431 + 11745108 11745361 L1PA3long 6157 - 10 264 116299 137 0 1 116 chain 422749 chr9 141213431 + 11765980 11772359 L1PA8 5853 + 101 5853 9466 101 0 3 9 0 1 90 19 23 483 5 7 121 3 0 137 0 1 203 0 3 230 0 5 50 0 1 72 7 6 25 39 15 141 302 0 146 0 28 21 2 0 230 40 41 42 11 7 103 1 2 38 0 2 182 0 9 132 0 12 258 372 0 119 0 1 20 0 4 90 1 0 4 7 9 95 20 10 4 1 0 179 0 13 139 0 1 33 0 2 291 1 3 531 2 1 152 0 1 99 20 6 40 1 2 72 1 6 33 0 1 42 0 2 136 0 3 339 1 0 44 2 0 48 2 6 20 1 0 5 2 1 52 2 1 19 3 2 91 chain 100094 chr9 141213431 + 11803218 11804309 L1PA2 6032 - 3 1094 36748 1091 chain 49538 chr9 141213431 + 11840359 11841029 L1PA10 4194 + 3426 4117 59361 223 0 4 63 17 29 42 6 10 138 0 2 145 1 0 35 chain 27787 chr9 141213431 + 11844973 11845290 L1PA3long 6157 + 5826 6142 93747 17 2 1 298 chain 232438 chr9 141213431 + 11853202 11855831 L1PA3long 6157 - 0 2628 17175 7 0 1 176 7 2 335 0 1 792 6 7 1042 0 1 264 chain 29253 chr9 141213431 + 11856084 11856415 L1P1 4361 + 2688 3019 87771 331 chain 79720 chr9 141213431 + 11894519 11895489 LTR5_Hs 974 - 0 974 43726 63 1 0 449 0 4 417 7 8 33 chain 78109 chr9 141213431 + 11896575 11898044 L1PA7 6471 + 5461 6470 44458 160 1 0 17 0 2 60 2 3 442 459 0 114 13 9 45 0 1 156 chain 107227 chr9 141213431 + 11927875 11929417 LTR12C 1709 - 0 1708 34908 84 1 0 87 99 0 310 51 20 52 0 47 33 0 2 179 0 200 167 0 1 60 0 3 60 23 66 40 0 1 296 chain 150367 chr9 141213431 + 11941141 11942870 L1PA4 6152 - 1 1728 24546 684 0 1 93 12 8 70 0 1 870 chain 259735 chr9 141213431 + 11942870 11945839 L1PA4 6152 + 1405 4397 15715 231 11 12 193 1 2 339 0 2 113 3 0 844 2 0 29 0 1 411 0 1 423 0 22 369 chain 13476 chr9 141213431 + 11948907 11949085 THE1D 372 - 40 259 146432 91 0 40 8 4 5 75 chain 8856 chr9 141213431 + 11949204 11949340 THE1D-int 1627 - 8 145 166347 18 5 6 34 1 2 46 1 0 31 chain 117527 chr9 141213431 + 11988807 11990138 L1PA4 6152 - 9 1335 31952 841 6 1 484 chain 9611 chr9 141213431 + 12009710 12009826 AluY 311 + 9 121 162532 9 3 0 91 1 0 12 chain 383678 chr9 141213431 + 12036814 12041935 L1PA8A 6298 + 1150 6292 10651 72 1 2 5 1 0 37 0 3 183 5 6 125 0 3 63 15 16 367 7 8 150 1 0 5 4 5 133 6 0 6 9 15 129 0 1 23 16 0 69 9 4 288 0 4 391 3 7 45 0 1 19 1 4 45 9 10 16 1 0 290 1 0 170 1 5 396 7 12 104 0 1 107 1 0 326 1 2 170 6 7 274 0 1 91 0 1 113 12 11 82 0 1 35 0 5 20 0 1 231 0 2 101 0 2 6 10 8 307 chain 50697 chr9 141213431 + 12064189 12064924 MER4E 760 - 1 760 58506 194 0 1 76 0 4 48 1 0 50 48 53 157 22 25 34 1 5 34 0 7 46 1 2 23 chain 4410 chr9 141213431 + 12078138 12078201 L1MB1 2102 + 1953 2007 201797 30 9 0 24 chain 178897 chr9 141213431 + 12078522 12080560 L1PA5 6144 - 4 2072 21084 153 0 28 936 0 1 369 0 1 580 chain 182549 chr9 141213431 + 12141905 12144552 MER4-int 2692 + 1 2680 20733 9 2 1 24 3 1 55 10 11 16 0 1 55 1 2 413 3 4 125 2 0 112 5 6 87 0 22 118 9 0 39 1 0 288 0 16 37 0 5 11 7 10 39 2 0 35 0 1 211 1 2 20 4 8 102 12 11 36 12 11 56 10 8 177 13 21 18 0 1 4 18 17 15 0 2 8 8 0 66 4 5 141 2 0 167 6 1 28 chain 3730 chr9 141213431 + 12145681 12145769 MER84 505 + 0 74 211463 30 34 20 24 chain 4736 chr9 141213431 + 12197228 12197287 L1PA3long 6157 - 2 60 198101 15 1 0 43 chain 28655 chr9 141213431 + 12205745 12206047 AluYg6 310 + 0 302 90505 302 chain 296281 chr9 141213431 + 12209252 12212623 L1PA5 6144 - 12 3377 13629 32 1 2 101 0 1 519 0 4 848 13 0 1524 0 1 333 chain 8891 chr9 141213431 + 12212623 12212723 L1P1 4361 + 1542 1642 165710 100 chain 13199 chr9 141213431 + 12218467 12219176 L1PB1 5432 - 12 710 110456 16 1 0 13 1 0 21 472 455 109 2 10 61 0 3 5 3 0 5 chain 18834 chr9 141213431 + 12218714 12218973 L1PA8 5853 + 5600 5853 130564 8 2 0 70 2 1 11 1 0 50 2 1 19 4 3 90 chain 28311 chr9 141213431 + 12219216 12219574 L1PA5 6144 - 12 362 91900 86 11 1 53 5 6 174 1 2 28 chain 2681 chr9 141213431 + 12219611 12219755 L1PB1 5432 - 748 889 110456 63 10 7 71 chain 44066 chr9 141213431 + 12237945 12238434 L1PA4 6152 - 1116 1605 64002 489 chain 83552 chr9 141213431 + 12238434 12239384 L1PA4 6152 + 5035 6141 42097 113 0 4 458 0 152 379 chain 2904 chr9 141213431 + 12255694 12255728 L1M2 1805 - 1212 1246 226980 34 chain 19591 chr9 141213431 + 12258274 12258535 L1PB1 5432 - 1301 1558 127513 23 1 0 122 2 0 24 1 0 88 chain 74864 chr9 141213431 + 12258535 12259512 L1PB1 5432 + 4117 5098 46081 187 0 1 4 2 1 299 10 15 180 12 11 283 chain 175149 chr9 141213431 + 12303140 12305131 L1PA4 6152 - 0 1986 21442 12 1 4 132 0 1 321 20 11 1505 chain 13362 chr9 141213431 + 12307399 12307550 L1PA4 6152 + 5989 6140 146841 151 chain 395270 chr9 141213431 + 12309535 12314775 L1PA8 5853 - 10 5247 10269 83 1 0 16 1 0 52 14 10 74 2 0 44 1 0 105 5 0 350 14 15 68 0 1 16 0 2 149 6 5 103 9 0 259 0 1 125 0 1 29 1 0 45 1 10 314 1 2 94 0 1 288 0 13 331 16 0 221 12 19 30 0 2 75 1 0 608 0 3 120 2 0 7 0 2 125 2 0 327 0 1 1004 13 6 23 25 26 21 0 4 7 chain 541279 chr9 141213431 + 12333994 12340025 L1PA3long 6157 + 0 6152 2625 152 0 1 216 8 0 407 0 128 1084 0 1 470 2 0 2756 0 1 936 chain 57199 chr9 141213431 + 12341547 12342281 L1PA8 5853 + 5125 5853 54407 439 1 0 25 1 0 4 0 1 16 2 0 69 1 0 10 1 0 9 1 2 36 7 6 18 2 1 92 chain 34632 chr9 141213431 + 12348641 12349049 L1PA7 6471 - 19 426 76713 41 1 0 366 chain 2971 chr9 141213431 + 12369697 12369730 L1MEf 1413 + 956 989 225649 33 chain 72455 chr9 141213431 + 12406633 12407448 L1PA5 6144 - 0 820 47282 11 1 3 91 0 3 712 chain 15952 chr9 141213431 + 12413385 12413625 AluSc8 310 + 45 301 138512 87 0 3 44 14 0 27 8 33 40 2 4 18 chain 11537 chr9 141213431 + 12415838 12416001 MER44A 345 + 86 254 154159 14 11 16 138 chain 35590 chr9 141213431 + 12440911 12441412 LTR7 482 - 0 482 75425 49 13 14 158 0 31 57 52 1 172 chain 25578 chr9 141213431 + 12475697 12476049 THE1B 368 + 1 368 101833 12 2 0 14 3 22 142 5 3 174 chain 175157 chr9 141213431 + 12476855 12478753 L1PA2 6032 - 1 1899 21439 1898 chain 283714 chr9 141213431 + 12505512 12508943 L1PA7 6471 + 3024 6470 14424 390 1 11 216 11 12 394 2 1 468 3 5 108 1 0 41 0 1 348 2 1 39 0 5 27 5 0 160 1 0 168 0 1 199 1 2 217 0 4 265 1 0 29 0 1 329 1 0 4 chain 18426 chr9 141213431 + 12515623 12515846 L1PA4 6152 + 5915 6141 131702 64 1 2 27 0 1 111 0 1 20 chain 22861 chr9 141213431 + 12533873 12534215 THE1B 368 - 0 368 116281 125 29 42 6 1 0 27 1 0 113 0 15 40 chain 119674 chr9 141213431 + 12534227 12535759 THE1B-int 1605 - 12 1560 31157 94 1 0 9 7 0 306 0 1 78 8 7 579 2 0 62 16 41 332 0 1 38 chain 64104 chr9 141213431 + 12542725 12543522 L1PA6 6164 - 2 794 50962 6 6 0 330 12 13 443 chain 183641 chr9 141213431 + 12556930 12558893 L1HS 6032 - 0 1963 20614 1963 chain 70967 chr9 141213431 + 12558893 12559649 L1HS 6032 + 3317 4073 47864 756 chain 43460 chr9 141213431 + 12667066 12667598 MER41A 554 - 24 554 64858 158 1 0 287 1 0 85 chain 72369 chr9 141213431 + 12691894 12693106 L1MA1 4479 - 289 1473 47314 18 0 1 5 40 29 30 2 0 29 1 0 123 12 8 77 4 0 6 2 1 4 1 0 15 2 0 18 1 0 27 1 2 42 1 0 7 22 20 18 1 0 14 0 4 132 17 20 24 1 0 127 3 0 65 0 1 58 4 0 14 1 0 76 5 1 18 2 0 18 1 0 75 0 1 25 7 15 16 chain 410163 chr9 141213431 + 12741324 12747087 L1PA8A 6298 - 10 5315 9797 97 1 8 8 7 0 38 5 1 580 1 2 64 2 1 27 9 13 560 1 0 20 0 13 31 1 0 369 8 7 7 0 1 160 8 5 42 1 0 42 0 2 313 1 2 18 5 3 8 0 1 394 0 3 8 3 0 23 0 4 18 1 0 4 0 1 9 4 5 4 1 0 52 173 0 47 256 0 142 0 3 152 0 2 313 21 7 144 18 0 58 0 2 909 0 1 126 25 1 20 0 1 24 0 1 119 1 0 112 1 0 8 1 4 18 0 4 89 15 14 16 chain 12880 chr9 141213431 + 12744291 12744452 L1PA8A 6298 + 4052 4216 148395 105 0 1 32 0 2 24 chain 7462 chr9 141213431 + 12755793 12755886 L1PA8 5853 + 5760 5853 174386 93 chain 22091 chr9 141213431 + 12767185 12767461 AluSp 311 + 9 290 119832 56 3 8 217 chain 24531 chr9 141213431 + 12780986 12781269 AluSp 311 - 28 311 107371 283 chain 24345 chr9 141213431 + 12799597 12799890 AluY 311 + 0 300 108391 131 0 2 6 1 6 155 chain 8380 chr9 141213431 + 12800722 12800879 MSTA 426 + 267 426 168959 60 33 38 5 3 0 56 chain 89294 chr9 141213431 + 12830038 12831310 HSMAR1 1287 - 0 1287 39891 52 3 0 200 0 1 54 4 5 71 2 1 229 70 68 22 4 7 259 0 6 137 1 12 35 1 0 128 chain 27672 chr9 141213431 + 12847849 12848225 THE1C 375 - 0 375 94140 176 16 13 5 0 2 179 chain 17147 chr9 141213431 + 12849023 12849228 L1PA5 6144 + 5946 6144 135177 52 7 0 146 chain 406855 chr9 141213431 + 12864822 12869780 L1PA7 6471 - 10 4994 9880 137 0 1 621 0 2 73 4 0 220 3 4 70 1 0 250 1 2 17 1 0 115 1 0 1097 0 2 353 2 0 290 7 18 494 0 1 61 0 1 4 6 17 207 6 4 239 0 1 44 1 0 90 0 1 79 1 0 4 0 1 168 0 4 89 8 9 194 chain 7810 chr9 141213431 + 12877830 12877954 Tigger3c 601 + 332 460 172256 24 1 11 33 10 4 56 chain 56050 chr9 141213431 + 12884021 12884631 L1PA2 6032 + 5421 6031 55089 610 chain 17592 chr9 141213431 + 12893665 12893997 THE1D 372 - 0 331 134022 32 1 0 90 61 70 117 18 9 13 chain 31086 chr9 141213431 + 12926644 12927072 MER57A1 433 - 0 433 82375 43 0 4 69 30 31 286 chain 38317 chr9 141213431 + 12943856 12944295 L1PA6 6164 + 5720 6160 71689 389 0 1 50 chain 43550 chr9 141213431 + 12948343 12948824 LTR7 482 + 0 482 64741 400 1 2 80 chain 295249 chr9 141213431 + 12948826 12952382 HERVH-int 3825 + 0 3825 13685 476 0 56 38 1 0 9 2 1 19 1 0 5 28 0 15 1 0 12 7 45 22 2 1 57 0 1 6 0 2 13 0 3 448 15 0 456 4 31 44 1 0 664 21 0 646 9 11 39 8 218 487 chain 44251 chr9 141213431 + 12953646 12954127 LTR7 482 + 0 482 63879 224 0 1 257 chain 32300 chr9 141213431 + 12958404 12958928 LTR77 607 - 0 502 80366 15 25 26 53 10 7 42 1 0 93 23 11 87 15 9 118 1 0 41 chain 20236 chr9 141213431 + 12982988 12983210 L1PA3long 6157 - 528 750 126424 222 chain 45628 chr9 141213431 + 12983210 12983712 L1PA3long 6157 + 5645 6157 62377 445 0 10 57 chain 31153 chr9 141213431 + 12990227 12990655 MLT2A1 477 - 0 471 82251 48 10 47 82 0 1 125 1 5 18 8 9 136 chain 16687 chr9 141213431 + 12990661 12990860 HERVL-int 5654 - 0 199 136444 199 chain 20176 chr9 141213431 + 13004322 13004556 AluY 311 + 52 287 126600 74 0 1 160 chain 551345 chr9 141213431 + 13037882 13043908 L1PA2 6032 + 0 6031 1269 2661 1 0 471 0 1 1096 0 4 1653 0 1 144 chain 3505 chr9 141213431 + 13063022 13063071 MER3 215 - 46 163 215277 11 0 68 38 chain 6076 chr9 141213431 + 13072413 13072502 MLT1B 390 - 0 90 184606 51 7 8 31 chain 40572 chr9 141213431 + 13099201 13099779 MER4B 649 + 0 642 68476 15 1 0 9 1 0 133 0 42 14 0 4 100 23 41 206 1 0 15 0 1 30 0 3 20 1 0 9 chain 23048 chr9 141213431 + 13115681 13115972 AluY 311 + 19 305 115401 115 0 1 118 0 1 21 11 4 26 chain 24731 chr9 141213431 + 13117842 13118132 AluSp 311 - 11 301 106269 290 chain 3599 chr9 141213431 + 13150405 13150445 L1PA3long 6157 + 6117 6157 213671 40 chain 24867 chr9 141213431 + 13152290 13152650 THE1B 368 + 0 368 105532 169 1 0 29 35 45 88 1 0 37 chain 12726 chr9 141213431 + 13160879 13161043 MER2 342 + 155 320 149346 113 0 1 51 chain 29544 chr9 141213431 + 13194321 13194711 L1PA8 5853 + 5465 5853 86437 16 0 5 78 1 0 47 2 0 67 2 1 8 1 3 5 2 0 49 1 0 16 1 0 87 1 0 6 chain 5343 chr9 141213431 + 13225148 13225263 Tigger3b 1229 + 648 762 191622 31 2 4 10 7 5 10 3 4 9 3 1 40 chain 2768 chr9 141213431 + 13232942 13232974 L1ME3A 1206 + 642 674 229216 32 chain 4622 chr9 141213431 + 13270568 13270728 MER33 330 + 127 294 199384 19 46 52 39 7 11 7 4 0 11 7 8 20 chain 22177 chr9 141213431 + 13291129 13291431 AluY 311 + 11 303 119457 32 23 14 75 0 1 124 2 0 46 chain 452419 chr9 141213431 + 13301511 13306686 L1PA4 6152 - 13 6152 8675 2339 0 18 1074 5 0 6 1 6 232 55 5 751 1 0 559 0 1 53 0 996 99 chain 303074 chr9 141213431 + 13340153 13343527 L1PA4 6152 - 9 3406 13277 617 0 1 783 0 3 939 0 18 414 0 1 621 chain 172800 chr9 141213431 + 13343527 13345506 L1PA4 6152 + 764 2750 21711 276 1 0 192 1 0 774 0 9 735 chain 163318 chr9 141213431 + 13389813 13392112 L1PA14 3548 + 1089 3453 22905 110 11 6 5 0 1 327 0 3 79 0 3 86 5 44 222 0 1 522 3 4 18 4 5 12 1 0 69 17 40 71 0 3 17 1 0 75 0 4 104 1 0 18 3 1 16 0 7 38 9 5 47 0 12 25 39 35 7 2 0 6 1 0 84 2 1 8 1 0 102 1 0 11 6 2 32 5 9 6 7 0 6 1 0 16 1 0 39 chain 200413 chr9 141213431 + 13402586 13404850 L1PA4 6152 - 0 2274 19181 6 0 5 102 0 1 153 2 1 358 0 1 217 0 4 1426 chain 48851 chr9 141213431 + 13405134 13405770 L1PA8 5853 - 0 629 59838 91 3 2 19 2 1 43 1 2 5 1 0 8 1 0 73 2 0 10 3 0 27 0 3 7 1 0 231 1 0 107 chain 10947 chr9 141213431 + 13409393 13409576 L1PA8 5853 - 5 196 156414 15 0 12 61 1 0 19 2 1 45 2 1 12 7 6 9 1 0 4 0 1 5 chain 9460 chr9 141213431 + 13425278 13425389 L1PA4 6152 - 1 119 163271 30 0 7 81 chain 171009 chr9 141213431 + 13539565 13541665 L1PA7 6471 - 8 2127 21942 176 0 2 110 0 1 43 1 0 510 2 0 83 0 1 28 0 13 22 0 5 273 5 0 140 0 1 387 0 4 320 chain 150826 chr9 141213431 + 13572834 13575031 L1PB1 5432 - 9 2132 24495 9 1 0 10 1 0 4 6 13 17 1 0 24 25 20 18 24 12 16 2 1 43 1 0 15 2 1 18 0 2 32 5 3 7 4 0 16 1 0 4 1 0 24 47 29 69 1 3 30 2 0 50 32 1 116 10 1 113 4 5 69 3 0 542 5 11 36 0 1 76 0 1 224 0 1 4 7 6 426 chain 6023 chr9 141213431 + 13593604 13593705 L1PB1 5432 - 5 99 185034 4 1 0 4 1 0 15 1 0 13 1 0 21 1 0 25 2 0 12 chain 54914 chr9 141213431 + 13650599 13651282 L1PA7 6471 - 2 683 55760 12 3 0 148 2 1 218 1 0 48 0 1 137 4 6 110 chain 20397 chr9 141213431 + 13651290 13651554 L1P3 4156 - 3873 4136 125902 25 10 9 229 chain 29514 chr9 141213431 + 13655422 13655732 AluYg6 310 + 0 310 86590 310 chain 96896 chr9 141213431 + 13662007 13663182 L1PA7 6471 - 17 1199 37568 21 9 0 7 0 9 759 0 6 30 0 1 349 chain 155508 chr9 141213431 + 13663182 13665085 L1PA7 6471 + 3368 5273 23922 100 0 1 100 5 8 256 1 0 164 13 5 4 1 0 476 1 5 118 1 0 4 0 1 134 6 5 279 8 1 198 0 12 34 chain 42478 chr9 141213431 + 13699429 13699941 L1PA4 6152 - 9 523 66036 132 5 0 7 17 24 351 chain 118344 chr9 141213431 + 13699941 13701246 L1PA4 6152 + 4296 5606 31673 1001 0 5 304 chain 94938 chr9 141213431 + 13708930 13710001 L1PA3long 6157 - 0 1060 38115 188 11 0 872 chain 142204 chr9 141213431 + 13747865 13749589 L1PA6 6164 - 3 1753 25780 7 2 0 135 3 12 478 0 11 119 8 9 65 0 7 774 0 1 88 1 0 44 chain 487420 chr9 141213431 + 13791548 13798665 L1PA7 6471 + 5 6465 7459 192 15 14 118 17 211 181 4 14 45 6 9 421 0 4 138 0 10 311 6 7 585 2 1 253 10 6 107 9 0 60 11 12 72 2 3 98 0 2 6 3 5 322 1 0 13 897 16 310 12 4 92 2 0 188 0 5 114 1 2 48 9 14 656 0 4 942 1 0 4 20 19 28 0 3 416 0 1 40 0 1 72 3 7 254 chain 74413 chr9 141213431 + 13794580 13795445 L1PA4 6152 + 5272 6152 46310 6 0 4 84 0 1 17 1 0 222 0 6 529 0 5 6 chain 27076 chr9 141213431 + 13851532 13851849 AluY 311 + 0 311 96017 132 0 1 45 6 1 123 2 0 9 chain 22305 chr9 141213431 + 13865425 13865694 AluY 311 + 18 288 118893 105 1 0 9 0 1 54 1 2 99 chain 42140 chr9 141213431 + 13880868 13881398 L1PA7 6471 + 5934 6464 66459 373 1 0 4 4 5 148 chain 80371 chr9 141213431 + 13888756 13889685 L1PA6 6164 + 5234 6162 43446 81 1 0 847 chain 25693 chr9 141213431 + 13894419 13894933 L1PA15 4387 + 3835 4341 101317 12 4 5 5 1 0 34 3 1 40 1 0 71 0 2 73 54 52 55 1 0 23 14 9 18 27 35 44 3 1 14 5 0 12 chain 137482 chr9 141213431 + 13906775 13908338 L1PA5 6144 + 4559 6128 26563 738 0 5 692 3 4 130 chain 19894 chr9 141213431 + 13913637 13914011 L1PB4 2604 - 162 482 127503 56 71 12 50 27 29 36 0 5 117 2 0 15 chain 5281 chr9 141213431 + 13916652 13916717 MIR 256 + 103 168 192191 65 chain 86593 chr9 141213431 + 13984857 13985828 L1PA4 6152 - 0 978 40932 259 0 1 590 0 4 29 0 2 93 chain 328910 chr9 141213431 + 13995392 13999117 L1P1 4361 + 614 4341 12240 612 5 4 608 0 4 694 0 1 707 0 1 902 2 1 157 1 0 23 2 1 12 chain 84088 chr9 141213431 + 14000000 14000929 L1PA4 6152 + 5224 6152 41860 668 1 0 260 chain 30863 chr9 141213431 + 14000936 14001672 HSMAR1 1287 - 854 1278 82744 97 317 0 195 0 4 12 10 11 105 chain 25397 chr9 141213431 + 14032965 14033324 THE1B 368 - 0 368 102698 125 35 45 22 0 2 5 3 0 169 chain 35272 chr9 141213431 + 14047983 14048386 L1PA3long 6157 + 5750 6150 75829 393 3 0 7 chain 33815 chr9 141213431 + 14048416 14048792 L1PA4 6152 + 5768 6143 77916 44 1 0 331 chain 24969 chr9 141213431 + 14100425 14100722 AluY 311 + 0 292 104964 123 1 0 50 0 3 5 3 0 5 4 0 106 chain 6861 chr9 141213431 + 14141821 14141901 LTR12C 1709 + 1293 1372 178493 16 1 0 63 chain 5582 chr9 141213431 + 14150832 14150928 L1MA3 4352 + 4219 4311 189252 41 2 0 22 15 13 16 chain 22982 chr9 141213431 + 14295342 14295635 AluY 311 + 0 288 115705 48 2 1 84 4 0 155 chain 36553 chr9 141213431 + 14367607 14368012 L1PA7 6471 + 6039 6444 74167 405 chain 9081 chr9 141213431 + 14409178 14409311 MER63D 473 - 292 428 165160 37 6 7 58 0 2 32 chain 6496 chr9 141213431 + 14433937 14434007 tRNA-His-CAY_ 70 - 0 70 181292 70 chain 23345 chr9 141213431 + 14449978 14450262 L1PA6 6164 - 8 292 113958 284 chain 279521 chr9 141213431 + 14457382 14460517 L1PA4 6152 + 3009 6143 14660 194 4 0 575 0 1 826 1 2 1431 0 1 104 chain 23640 chr9 141213431 + 14472571 14472863 AluY 311 + 15 307 112354 37 6 5 75 0 1 174 chain 26690 chr9 141213431 + 14559424 14559788 THE1C 375 + 0 375 97351 135 0 4 15 0 8 12 22 21 180 chain 123814 chr9 141213431 + 14569288 14570770 L1PA7 6471 - 2119 3602 29764 22 4 0 228 1 0 110 1 0 405 0 2 94 1 0 5 1 2 380 0 4 11 0 1 219 chain 179884 chr9 141213431 + 14570770 14572881 L1PA7 6471 + 4359 6469 21003 626 2 0 444 0 1 109 0 1 8 1 0 9 0 1 35 0 1 27 1 0 509 0 1 328 2 0 10 chain 192751 chr9 141213431 + 14599774 14602146 L1PA7 6471 + 4079 6461 19791 585 4 8 259 0 4 50 8 6 284 0 1 27 1 0 26 1 2 283 0 3 66 0 1 620 12 11 146 chain 25614 chr9 141213431 + 14658458 14658730 AluYf4 310 - 0 272 101657 272 chain 554403 chr9 141213431 + 14663993 14670013 L1PA2 6032 + 0 6030 898 614 0 4 89 0 7 4817 2 1 498 chain 387913 chr9 141213431 + 14681811 14686214 L1PA5 6144 + 1752 6144 10524 608 0 1 148 1 0 50 0 4 376 0 2 229 1 0 28 13 0 304 1 0 2276 1 0 216 0 1 137 3 1 11 chain 26177 chr9 141213431 + 14708228 14708565 L1P3 4156 - 20 353 99287 21 2 1 7 2 0 129 2 1 174 chain 11179 chr9 141213431 + 14830616 14830753 LTR9B 643 + 451 588 155521 137 chain 128514 chr9 141213431 + 14834327 14836378 HUERS-P3b-int 2065 + 13 2052 28448 81 3 0 41 11 11 21 10 26 124 6 7 140 1 4 82 167 160 62 6 5 51 1 0 22 1 0 182 0 5 71 0 1 106 5 6 12 0 13 139 0 1 85 1 0 42 11 9 78 0 3 11 1 0 23 1 0 30 0 3 26 1 0 32 3 1 35 2 1 36 2 0 19 4 1 62 4 0 58 1 0 90 0 7 6 34 0 8 chain 30577 chr9 141213431 + 14836882 14837441 LTR9B 643 + 5 559 83246 13 6 0 51 0 2 32 0 8 17 7 9 50 0 1 13 5 7 13 11 12 43 0 1 4 9 10 130 42 40 13 7 4 56 10 0 12 2 0 13 chain 26326 chr9 141213431 + 14840340 14840697 THE1B 368 - 20 368 98714 157 28 19 172 chain 30397 chr9 141213431 + 14846119 14846518 L1PA8 5853 + 5456 5847 83687 106 1 0 48 2 0 69 1 0 7 1 0 8 1 0 46 2 1 19 2 1 86 chain 7827 chr9 141213431 + 14850437 14850532 U6 107 + 11 106 172142 95 chain 553340 chr9 141213431 + 14870654 14876821 L1PA3long 6157 - 0 6151 1030 901 0 1 221 10 1 181 4 0 1593 0 3 47 1 0 618 0 1 1055 8 1 1528 chain 170595 chr9 141213431 + 14893673 14895917 MER41-int 2638 + 363 2636 21981 96 1 0 43 0 6 35 0 2 151 1 2 24 1 0 12 11 12 52 11 25 48 9 10 61 6 5 86 1 0 183 2 1 144 7 6 303 1 0 53 1 0 308 0 2 28 0 2 29 6 5 21 0 2 198 0 1 88 0 5 98 1 2 124 chain 36318 chr9 141213431 + 14895926 14896702 MER41A 554 + 0 461 74481 95 0 1 150 6 0 79 310 0 136 chain 5241 chr9 141213431 + 14926542 14926608 LTR40b 463 - 24 90 192613 66 chain 521542 chr9 141213431 + 14949425 14955870 L1PA7 6471 + 0 6470 5005 146 2 3 31 0 1 4 3 2 49 9 0 162 0 3 9 4 5 361 4 10 26 0 5 202 11 0 86 0 4 123 0 1 270 3 4 294 1 2 58 0 11 493 0 2 57 0 3 133 0 1 35 0 1 106 0 10 148 1 2 140 0 1 499 2 0 7 6 7 106 17 16 212 7 0 138 8 6 5 1 0 132 0 1 179 0 1 174 0 1 977 0 1 156 2 0 76 0 2 606 0 1 159 1 0 4 chain 28275 chr9 141213431 + 14963355 14963689 LTR12_ 688 + 354 688 92020 334 chain 33806 chr9 141213431 + 14967891 14968308 LTR22 571 + 1 419 77931 250 2 0 5 0 2 24 1 2 135 chain 406455 chr9 141213431 + 14968323 14973137 L1PA6 6164 + 1392 6162 9896 296 9 0 140 1 0 134 0 1 362 5 0 884 30 8 51 0 5 373 1 0 630 0 3 54 1 0 467 21 0 512 0 4 91 0 3 752 chain 38659 chr9 141213431 + 15005791 15006233 L1PA6 6164 - 2 444 71215 442 chain 72929 chr9 141213431 + 15024716 15025545 L1PA4 6152 - 0 835 47054 52 0 4 86 8 10 683 chain 464032 chr9 141213431 + 15025831 15031342 L1PA6 6164 + 638 6159 8256 47 1 2 143 13 14 192 0 1 221 0 4 642 0 1 421 1 3 31 1 2 725 2 1 165 0 1 46 1 0 230 1 0 165 1 0 253 1 4 1360 4 0 6 5 9 378 9 7 310 0 1 136 chain 301125 chr9 141213431 + 15037170 15040577 L1PA4 6152 + 2735 6152 13366 435 0 1 769 0 1 58 0 3 285 0 2 497 11 11 204 0 2 971 5 6 172 chain 402849 chr9 141213431 + 15050671 15057599 L1PA7 6471 + 1518 6468 10001 79 0 3 35 16 25 503 4 9 662 0 6 640 8 6 86 0 4 259 0 1 49 5 5 30 0 1 48 8 9 31 3 1 128 16 12 337 0 1 286 0 3 281 4 0 563 2 1 54 2000 0 775 0 1 16 chain 56304 chr9 141213431 + 15061941 15063004 L1PA8 5853 - 6 757 54960 87 1 0 19 3 2 38 10 8 11 1 0 71 3 1 35 15 14 30 303 0 384 2 1 50 chain 34321 chr9 141213431 + 15063004 15063423 L1PA8 5853 + 4123 5093 76933 157 0 554 172 1 0 3 2 0 84 chain 3329 chr9 141213431 + 15072675 15072727 L1MD3 1191 + 506 550 218416 32 8 0 12 chain 13412 chr9 141213431 + 15076233 15076423 L1MB2 1706 + 1384 1573 146665 129 17 15 19 0 1 25 chain 17910 chr9 141213431 + 15082027 15082373 THE1B 368 - 0 361 133082 49 14 13 57 44 59 18 26 25 77 2 4 59 chain 4778 chr9 141213431 + 15105307 15105362 L1M3c 1411 + 614 669 197594 55 chain 23589 chr9 141213431 + 15106567 15106847 AluSg 306 + 11 291 112636 280 chain 6564 chr9 141213431 + 15124805 15124887 LTR54B 464 + 0 82 180756 82 chain 23917 chr9 141213431 + 15212432 15212712 AluSp 311 - 21 299 110828 158 2 0 120 chain 2784 chr9 141213431 + 15212937 15212967 L1MA4 2864 + 2780 2810 228937 30 chain 6952 chr9 141213431 + 15230285 15230491 L1MB8 1703 - 41 194 177795 25 102 49 79 chain 24352 chr9 141213431 + 15230707 15231001 AluSz 310 + 10 301 108361 26 3 0 265 chain 149914 chr9 141213431 + 15233321 15235027 SVA_D 2077 + 0 2062 24621 28 0 2 651 37 0 236 0 37 33 0 51 60 0 303 661 chain 2294 chr9 141213431 + 15234009 15234035 SVA_D 2077 + 497 523 235429 26 chain 21274 chr9 141213431 + 15251298 15251567 AluSp 311 + 20 290 122946 209 6 7 54 chain 13210 chr9 141213431 + 15322390 15322557 THE1C 375 + 208 375 147424 167 chain 97297 chr9 141213431 + 15326294 15327350 L1PA2 6032 + 4972 6032 37485 204 0 4 852 chain 35667 chr9 141213431 + 15327671 15328426 THE1B-int 1605 - 5 444 75309 163 317 0 238 0 1 37 chain 22943 chr9 141213431 + 15327860 15328137 AluSp 311 + 14 291 115893 277 chain 22790 chr9 141213431 + 15344953 15345212 AluSp 311 + 5 265 116631 23 0 1 236 chain 23286 chr9 141213431 + 15353102 15353561 LTR2B 499 + 0 471 114277 14 1 0 28 58 69 14 8 0 59 47 58 66 0 1 30 9 8 69 1 0 55 chain 57497 chr9 141213431 + 15354625 15355366 MER4E1 777 - 33 777 54242 193 0 1 4 24 29 393 6 7 78 1 0 22 3 0 17 chain 22176 chr9 141213431 + 15356021 15356304 AluSp 311 - 16 311 119464 13 1 8 202 1 6 66 chain 21461 chr9 141213431 + 15356331 15356648 MER4E 760 + 444 760 122293 48 27 0 8 13 39 221 chain 43627 chr9 141213431 + 15359587 15360100 MER9a2 513 - 0 513 64657 165 0 1 218 1 0 129 chain 62296 chr9 141213431 + 15364599 15365546 LTR12D 1347 - 0 939 51753 60 9 21 184 5 4 30 1 0 27 27 0 70 5 4 61 1 0 4 0 1 170 1 59 65 0 1 19 0 31 46 80 0 82 chain 3351 chr9 141213431 + 15365384 15365464 LTR12D 1347 - 707 816 160538 30 8 6 36 5 36 1 chain 21072 chr9 141213431 + 15365551 15365835 AluSp 311 + 30 310 123648 45 2 1 169 8 5 60 chain 5070 chr9 141213431 + 15365874 15365939 MER2 342 - 276 341 194420 65 chain 24977 chr9 141213431 + 15366070 15366419 L1PA8 5853 - 63 406 104922 28 7 6 5 0 1 9 2 1 47 2 1 13 2 1 70 2 0 44 1 0 117 chain 10595 chr9 141213431 + 15368594 15368729 THE1B 368 + 235 368 157847 5 1 0 68 1 0 60 chain 55727 chr9 141213431 + 15375885 15376629 L1PBa 3878 + 974 1724 55284 6 0 7 132 13 14 308 9 11 111 0 1 56 5 0 104 chain 36415 chr9 141213431 + 15378953 15379727 LTR10F 562 - 8 562 74348 136 312 0 187 0 3 31 0 84 27 0 5 81 chain 32841 chr9 141213431 + 15379818 15380250 LTR7B 505 - 17 505 79474 231 2 25 19 7 5 60 0 2 22 9 40 71 0 2 11 chain 14885 chr9 141213431 + 15387157 15387369 MSTA 426 + 195 426 141668 43 9 8 50 1 21 109 chain 29557 chr9 141213431 + 15394896 15395203 AluYb8 318 + 0 307 86387 307 chain 159141 chr9 141213431 + 15405852 15407745 SVA_F 1814 + 0 1812 23447 945 56 21 161 46 1 327 0 3 339 0 1 4 5 0 10 chain 4713 chr9 141213431 + 15406797 15406853 SVA_F 1814 + 1009 1142 128842 7 0 78 34 1 0 14 chain 3527 chr9 141213431 + 15407014 15407059 SVA_F 1814 + 1128 1173 178815 45 chain 251892 chr9 141213431 + 15409597 15414153 L1PB1 5432 - 2 4020 16131 10 2 0 15 3 2 12 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 16 1 0 14 0 1 25 4 3 16 2 1 53 2 0 8 14 6 6 1 0 33 195 33 240 12 16 69 0 4 129 3 0 535 0 1 88 1 2 11 7 6 18 0 1 110 277 568 145 0 1 65 9 3 232 1 0 126 3 0 28 0 1 135 67 59 110 0 4 711 319 0 144 308 1 106 chain 28798 chr9 141213431 + 15419317 15420036 LTR7B 505 - 0 505 89903 58 0 12 43 317 8 53 1 0 41 6 61 16 7 5 84 0 31 93 chain 143835 chr9 141213431 + 15441388 15443216 SVA_C 1631 - 0 1629 25512 17 4 0 571 1 0 38 88 0 11 46 0 138 61 0 829 2 0 5 0 3 17 chain 3728 chr9 141213431 + 15442118 15442164 SVA_C 1631 - 683 729 147426 46 chain 2225 chr9 141213431 + 15442302 15442327 SVA_C 1631 - 729 754 150052 25 chain 1648 chr9 141213431 + 15442328 15442363 SVA_C 1631 - 780 815 152944 35 chain 24072 chr9 141213431 + 15455882 15456161 AluSp 311 - 22 301 109918 30 1 0 4 0 1 244 chain 21757 chr9 141213431 + 15467838 15468139 AluSp 311 + 2 300 121181 204 11 10 61 7 5 18 chain 6213 chr9 141213431 + 15502184 15502342 MER2 342 - 129 293 183469 54 0 4 10 66 68 28 chain 23433 chr9 141213431 + 15504480 15504755 AluY 311 + 27 303 113458 105 0 1 170 chain 5630 chr9 141213431 + 15532585 15532815 LTR41 747 - 20 240 188763 18 1 0 45 37 49 12 94 73 23 chain 18429 chr9 141213431 + 15544118 15547538 Tigger1 2417 - 528 1239 131696 67 3102 391 175 0 12 8 10 0 58 chain 13094 chr9 141213431 + 15549372 15549519 L1PA7 6471 + 6321 6468 147868 147 chain 456283 chr9 141213431 + 15555683 15561116 L1PA5 6144 - 0 6144 8532 145 1 0 9 9 10 328 75 19 1285 0 4 650 0 1 203 0 4 215 0 2 105 1 0 679 0 1 287 1 3 136 2 1 320 7 11 185 0 1 370 10 1 136 1 3 4 1 0 73 6 15 98 0 749 91 chain 6856 chr9 141213431 + 15556176 15556250 L1PA5 6144 - 4352 4426 177175 74 chain 59495 chr9 141213431 + 15579995 15580835 L1PB1 5432 + 4094 4923 52942 138 6 7 83 0 4 140 27 6 33 0 1 24 1 3 63 9 13 19 3 0 196 0 1 98 chain 180252 chr9 141213431 + 15580835 15582938 L1PA7 6471 + 4365 6470 20969 375 0 1 880 6 9 196 2 0 276 2 0 354 0 2 12 chain 17311 chr9 141213431 + 15592873 15593064 L1PA3long 6157 - 0 192 134757 149 0 1 42 chain 534511 chr9 141213431 + 15595152 15601275 L1PA4 6152 - 0 6146 3649 6 0 5 491 0 1 117 0 1 86 1 0 143 0 4 1405 0 1 644 3 0 934 0 1 764 0 1 314 1 10 80 0 2 88 0 1 786 1 2 259 chain 313997 chr9 141213431 + 15624318 15627958 L1PA5 6144 - 5 3645 12857 144 0 1 471 2 0 80 2 1 814 1 0 262 1 0 15 0 4 145 5 7 520 2 0 505 2 1 592 0 1 77 chain 547979 chr9 141213431 + 15628037 15634178 L1PA3long 6157 + 0 6152 1711 1265 0 4 938 1 3 499 0 5 807 0 2 1706 1 0 4 0 1 150 1 0 582 1 0 186 chain 23327 chr9 141213431 + 15635400 15635702 MLT2A2 560 - 251 560 114050 64 2 3 116 0 1 72 0 5 48 chain 53663 chr9 141213431 + 15637471 15638057 L1PA3long 6157 - 2 588 56573 586 chain 529464 chr9 141213431 + 15644264 15650407 L1PA5 6144 + 3 6144 4249 918 0 4 236 28 19 874 4 0 260 2 3 808 0 5 365 1 0 27 1 2 889 1 2 1729 chain 15482 chr9 141213431 + 15654668 15654846 L1P1 4361 + 1 179 139950 178 chain 27725 chr9 141213431 + 15654858 15655179 L1PA4 6152 + 5819 6140 93950 321 chain 424416 chr9 141213431 + 15671367 15676524 L1PA6 6164 - 18 6164 9435 86 2 5 11 14 1 308 0 6 175 0 3 399 1 0 213 9 10 208 4 0 352 0 4 243 3 7 570 16 15 157 10 0 128 1 0 55 0 1 95 7 8 751 12 1 567 14 15 306 1 0 344 4 1011 91 chain 132073 chr9 141213431 + 15699015 15700603 LTR12C 1709 - 0 1709 27619 74 16 14 180 0 1 212 0 4 106 3 1 5 1 0 275 1 0 10 0 119 216 4 5 29 0 2 456 chain 7230 chr9 141213431 + 15702350 15702442 Tigger1 2417 + 1114 1206 175893 92 chain 22575 chr9 141213431 + 15720704 15720964 L1PA5 6144 - 15 276 117691 183 0 1 77 chain 475503 chr9 141213431 + 15746629 15752897 L1PA6 6164 + 0 6161 7870 42 12 13 302 34 7 30 24 25 32 33 14 101 22 0 3 54 0 19 2 0 157 21 0 48 1 18 89 3 7 123 0 1 277 74 0 153 0 1 354 0 1 13 1 0 228 0 7 269 19 15 707 0 1 130 6 4 32 4 1 16 0 4 22 1 6 335 1 2 18 0 2 163 0 38 345 0 4 218 10 6 109 0 4 159 1 2 73 0 15 160 0 1 392 0 4 68 1 3 175 0 4 66 11 9 5 0 1 70 1 8 19 5 6 69 1 2 181 3 5 139 3 0 9 chain 117720 chr9 141213431 + 15757043 15758627 THE1B-int 1605 + 0 1605 31886 25 3 0 5 1 4 22 20 0 329 0 7 40 0 25 47 7 8 58 10 16 22 0 1 66 0 1 4 0 2 24 2 1 55 5 3 42 0 1 234 1 0 125 1 2 436 chain 18778 chr9 141213431 + 15758627 15758984 THE1B 368 + 0 368 130744 34 0 4 9 0 1 59 15 16 28 88 93 124 chain 4495 chr9 141213431 + 15758985 15759037 L1PA16 3655 - 192 244 200840 52 chain 3040 chr9 141213431 + 15759651 15759719 L1MC4 1079 - 329 396 224200 32 24 23 12 chain 58571 chr9 141213431 + 15773749 15775093 L1PB1 5432 + 4427 5423 53660 9 0 1 113 1 0 78 0 1 5 322 1 45 26 29 21 0 1 4 0 1 21 18 17 30 3 2 46 0 1 245 9 11 5 3 0 24 1 0 6 1 0 12 18 12 52 2 1 16 1 0 47 1 0 12 2 0 6 15 6 18 3 1 5 1 0 14 2 0 16 9 8 14 8 7 13 1 0 12 1 0 7 chain 9353 chr9 141213431 + 15776178 15776284 U6 107 - 0 107 163787 47 0 1 59 chain 36265 chr9 141213431 + 15786584 15787052 LTR7C 471 + 0 471 74543 144 0 1 128 10 11 165 7 8 14 chain 9163 chr9 141213431 + 15789108 15789220 Tigger4a 237 + 0 114 164751 52 0 2 60 chain 1321 chr9 141213431 + 15789220 15789250 Tigger4a 237 - 207 237 184265 30 chain 182238 chr9 141213431 + 15789613 15791685 L1PA5 6144 - 12 2093 20763 435 0 1 4 0 1 216 0 4 1131 0 2 266 0 1 20 chain 164157 chr9 141213431 + 15791687 15793547 L1P1 4361 + 844 2710 22785 15 0 1 292 0 1 1410 0 4 143 chain 6910 chr9 141213431 + 15798440 15798520 L1PA8 5853 - 0 80 178115 80 chain 148411 chr9 141213431 + 15799918 15802109 L1MA2 4263 - 150 2325 24824 9 1 0 41 12 5 30 0 8 45 19 17 152 40 40 104 1 0 10 4 6 36 5 6 17 7 3 18 1 0 483 1 2 11 0 2 38 9 8 249 1 0 4 14 15 7 1 0 32 18 13 57 10 6 277 7 8 27 2 0 72 22 21 5 3 0 36 1 0 70 0 4 149 1 0 32 chain 537927 chr9 141213431 + 15817207 15823332 L1PA4 6152 + 1 6151 3161 956 2 1 274 1 0 145 0 2 69 0 1 752 0 4 1045 0 3 208 0 1 99 0 1 794 0 4 440 2 3 498 1 0 681 2 3 11 0 10 145 chain 24044 chr9 141213431 + 15864309 15864586 L1PA5 6144 - 0 275 110089 148 2 0 127 chain 35497 chr9 141213431 + 15892119 15892562 L1PA11 4918 - 1656 2096 75560 362 3 0 78 chain 89885 chr9 141213431 + 15892578 15893856 L1PA11 4918 + 3303 4578 39688 48 0 16 65 13 9 152 1 0 6 0 1 278 0 1 43 1 2 340 1 5 65 4 0 59 2 1 13 2 0 65 19 16 20 3 0 9 8 3 10 13 9 15 3 6 7 2 0 11 chain 534694 chr9 141213431 + 15902550 15908651 L1PA4 6152 + 6 6140 3630 423 0 1 306 1 0 214 0 4 80 0 1 220 1 2 584 0 4 219 0 1 1803 0 1 549 0 17 201 1 0 662 0 4 790 0 1 47 chain 369813 chr9 141213431 + 15910550 15915102 L1PA7 6471 - 5 6470 11100 389 0 1 459 1 0 340 1 0 323 1 0 202 0 1 172 0 1 7 1 0 51 4 5 76 0 8 12 0 2 523 0 1 63 0 1 6 0 8 376 0 1890 149 0 3 540 2 0 553 0 2 301 chain 125757 chr9 141213431 + 15944888 15946283 L1PA3long 6157 - 7 1404 29169 141 0 2 1254 chain 44384 chr9 141213431 + 15946283 15946781 L1PA3long 6157 + 4260 4758 63513 498 chain 194665 chr9 141213431 + 15947826 15950015 L1PA3long 6157 - 0 2212 19610 5 2 0 9 0 3 832 0 4 632 0 1 233 0 17 476 chain 117175 chr9 141213431 + 15950016 15951364 L1HS 6032 + 1257 2607 31923 175 0 1 197 7 8 969 chain 10605 chr9 141213431 + 15961953 15962127 MER58B 340 + 45 218 157806 37 4 5 12 4 0 7 1 3 29 0 1 4 1 0 75 chain 20221 chr9 141213431 + 15963091 15963324 L1PA4 6152 + 5903 6136 126465 233 chain 529458 chr9 141213431 + 15988446 15994580 L1PA5 6144 + 3 6131 4250 147 4 0 666 0 1 418 1 0 574 1 0 28 0 4 934 9 6 454 0 1 440 1 0 142 4 5 87 14 0 986 0 1 400 0 4 14 0 1 71 1 4 192 1 0 80 0 1 33 10 11 264 1 2 157 chain 131362 chr9 141213431 + 16006436 16007902 L1PA4 6152 - 6 1473 27788 1244 0 1 222 chain 7862 chr9 141213431 + 16024991 16025093 L1MB5 1630 + 1012 1114 171916 102 chain 4410 chr9 141213431 + 16036826 16036895 L1MA5 2750 + 2591 2658 201796 39 3 2 14 1 0 12 chain 19409 chr9 141213431 + 16046520 16046883 THE1B 368 + 0 368 128924 13 2 0 95 26 27 41 0 2 7 34 29 14 7 15 67 17 18 40 chain 29969 chr9 141213431 + 16059493 16059811 AluYb8 318 - 0 318 84916 318 chain 135323 chr9 141213431 + 16066458 16067931 L1PA2 6032 - 0 1473 26950 1473 chain 46848 chr9 141213431 + 16067931 16068435 L1PA2 6032 + 3993 4497 61176 504 chain 134393 chr9 141213431 + 16085920 16087956 L1P2 5180 - 1485 3293 27104 12 3 0 91 0 12 23 8 8 123 1 0 123 259 0 79 11 10 41 2 3 111 0 6 7 24 0 109 10 11 452 0 1 146 14 0 63 2 0 251 0 55 71 chain 184961 chr9 141213431 + 16087956 16090571 L1PA7 6471 + 4044 6465 20500 373 0 2 66 1 2 178 0 8 6 0 1 192 0 1 429 0 1 101 357 133 87 0 4 43 0 5 11 11 13 40 0 1 36 0 1 15 0 1 423 0 4 238 2 0 6 chain 30931 chr9 141213431 + 16089302 16089659 L1PA7 6471 - 926 1283 81590 357 chain 165219 chr9 141213431 + 16187280 16189119 L1PA4 6152 - 9 1850 22625 35 0 1 518 0 1 1286 chain 492925 chr9 141213431 + 16223082 16229452 L1PA7 6471 + 0 6454 7228 239 58 66 15 13 12 64 10 8 69 1 0 104 3 0 163 12 17 255 0 22 130 2 1 48 0 4 14 0 4 17 23 42 345 0 1 46 8 7 40 0 4 22 5 8 9 0 1 371 6 1 208 0 2 10 0 9 511 0 4 209 0 2 15 0 1 364 1 2 51 7 11 117 0 9 107 0 1 428 0 2 443 26 11 281 2 0 6 17 19 118 0 1 271 1 0 4 11 12 188 1 2 53 1 0 4 1 4 649 0 3 173 chain 14118 chr9 141213431 + 16279632 16279815 Tigger2a 444 - 121 305 144155 22 0 4 152 3 0 6 chain 403390 chr9 141213431 + 16295146 16300565 L1PB1 5432 + 33 5420 9987 13 7 8 210 14 15 585 1 2 484 0 1 4 2 1 39 2 1 6 8 0 8 19 8 126 0 4 259 4 0 382 0 1 300 3 0 4 2 0 302 8 11 29 4 0 99 0 4 198 0 1 117 1 0 355 15 1 117 2 4 225 1 0 123 17 18 125 1 0 4 0 1 371 1 2 15 8 5 212 15 12 258 1 2 10 27 52 53 3 2 15 1 0 43 1 0 16 3 0 7 5 1 8 5 0 15 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 12867 chr9 141213431 + 16358632 16358810 MER107 203 + 21 203 148768 116 1 0 19 17 22 25 chain 12710 chr9 141213431 + 16375094 16375261 L1PB3 3668 + 2172 2340 149417 78 4 5 85 chain 246288 chr9 141213431 + 16377808 16380878 L1PA8A 6298 - 8 3115 16429 124 2 0 188 0 2 404 0 2 77 0 4 420 0 1 8 1 0 239 1 0 632 1 0 5 14 17 288 0 1 83 0 18 79 1 0 215 2 1 9 0 2 22 1 8 38 1 5 215 chain 122339 chr9 141213431 + 16381179 16382532 L1PA4 6152 - 866 2227 30270 929 0 8 424 chain 70947 chr9 141213431 + 16382532 16383341 L1PA4 6152 + 5336 6151 47800 353 0 2 121 0 1 187 0 3 148 chain 29344 chr9 141213431 + 16389407 16389720 AluYa5 310 + 0 310 87322 97 3 0 213 chain 73631 chr9 141213431 + 16394001 16395076 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5424 178588 19 8 5 13 0 3 22 1 0 21 1 0 13 1 0 16 1 0 4 chain 15288 chr9 141213431 + 16550154 16550364 MER30 238 + 0 238 140516 110 1 28 14 0 6 8 6 0 47 0 1 24 chain 13110 chr9 141213431 + 16559206 16559388 MER30 238 + 36 238 147809 52 0 6 15 8 24 28 2 0 77 chain 7687 chr9 141213431 + 16608346 16608436 LTR9B 643 + 471 561 172999 90 chain 3618 chr9 141213431 + 16615661 16615744 MER34 540 + 385 470 213376 21 21 22 26 1 2 14 chain 15311 chr9 141213431 + 16621689 16622013 MER33 330 + 8 325 140460 91 19 21 12 69 53 110 7 14 16 chain 3834 chr9 141213431 + 16656036 16656164 MER20 218 + 48 191 209858 33 56 78 6 7 0 26 chain 23211 chr9 141213431 + 16838280 16838571 AluSp 311 + 10 294 114637 115 7 0 169 chain 23902 chr9 141213431 + 16845867 16846154 AluY 311 + 2 299 110900 164 0 10 123 chain 28622 chr9 141213431 + 16876670 16877033 LTR12C 1709 - 531 940 90651 19 0 47 275 1 0 68 chain 23750 chr9 141213431 + 16878170 16878464 AluSp 311 + 5 299 111773 294 chain 23629 chr9 141213431 + 16888090 16888372 AluY 311 + 25 306 112415 160 7 6 115 chain 9725 chr9 141213431 + 16891193 16891330 L1MB3 1562 + 1279 1414 161961 72 1 0 14 6 5 44 chain 22693 chr9 141213431 + 16902162 16902418 L1PA5 6144 - 5 260 117108 143 1 0 112 chain 28172 chr9 141213431 + 16905612 16905922 AluYa5 310 - 10 310 92397 7 10 0 293 chain 5314 chr9 141213431 + 16906835 16906898 MER53 195 + 128 190 191881 4 1 0 58 chain 4639 chr9 141213431 + 16908853 16908910 MER57E1 380 - 0 57 199206 57 chain 22823 chr9 141213431 + 16917307 16917659 THE1B 368 + 1 348 116483 72 8 1 95 1 0 32 0 1 12 0 4 6 31 29 95 chain 4856 chr9 141213431 + 16944987 16945046 L1MB7 1623 + 1058 1117 196711 59 chain 19234 chr9 141213431 + 16972312 16972956 THE1D 372 + 47 372 129426 22 16 17 59 322 0 21 32 34 24 1 0 84 0 1 63 chain 144919 chr9 141213431 + 16976741 16978368 SVA_D 2077 - 0 2065 25338 535 0 225 262 17 190 100 0 40 713 chain 5345 chr9 141213431 + 16995810 16995934 L1MA1 4479 + 4079 4190 191588 28 2 0 35 2 1 8 1 0 12 23 14 13 chain 3901 chr9 141213431 + 17047158 17047255 MLT1K 546 - 39 132 208826 27 42 38 28 chain 20539 chr9 141213431 + 17052260 17052544 AluSx3 311 + 11 300 125513 17 4 8 113 15 16 135 chain 114313 chr9 141213431 + 17055190 17056622 L1PA8A 6298 - 7 1450 32993 93 7 8 6 0 1 117 0 1 485 1 0 8 0 2 6 2 1 72 0 3 144 0 5 102 1 0 276 5 6 107 chain 28338 chr9 141213431 + 17071804 17072136 L1PA7 6471 + 6135 6467 91803 332 chain 127871 chr9 141213431 + 17072421 17074112 LTR12C 1709 + 0 1709 28604 294 4 5 40 0 2 27 1 0 60 8 9 24 3 0 5 4 7 280 53 0 84 1 0 17 60 22 131 0 1 104 1 0 4 4 2 106 0 4 168 0 102 48 1 0 95 0 4 64 chain 3572 chr9 141213431 + 17073171 17073224 LTR12C 1709 + 831 883 116364 6 1 0 46 chain 3909 chr9 141213431 + 17073326 17073384 LTR12C 1709 + 1055 1112 116364 9 1 0 48 chain 18817 chr9 141213431 + 17087759 17088018 AluY 311 + 40 300 130622 90 31 32 138 chain 2528 chr9 141213431 + 17096119 17096196 L1MD2 1676 - 22 96 232757 11 1 0 9 31 29 25 chain 23289 chr9 141213431 + 17121802 17122156 THE1C 375 - 0 366 114262 10 0 1 122 58 69 164 chain 20390 chr9 141213431 + 17131977 17132227 L1PA5 6144 + 5883 6132 125928 11 2 0 142 0 1 95 chain 13035 chr9 141213431 + 17142166 17142364 MER30 238 + 25 238 148101 83 4 22 44 17 14 50 chain 29654 chr9 141213431 + 17144820 17145138 AluYb8 318 - 0 318 86052 318 chain 437055 chr9 141213431 + 17148818 17154571 L1PA7 6471 - 2 5443 9124 10 3 0 41 0 1 101 4 6 501 336 0 180 19 22 516 0 1 412 0 4 497 13 0 861 0 1 561 3 6 107 0 1 213 0 3 163 1 0 159 2 0 39 12 16 273 1 2 373 3 0 7 7 10 31 0 1 6 1 0 73 0 19 224 chain 59571 chr9 141213431 + 17154591 17155278 LTR12_ 688 + 0 688 53069 425 0 1 262 chain 6983 chr9 141213431 + 17156701 17156813 Tigger1 2417 - 22 117 177591 20 19 2 73 chain 103090 chr9 141213431 + 17177445 17178945 LTR12C 1709 - 0 1709 35968 84 15 14 336 2 1 46 3 20 80 0 47 244 2 1 17 0 119 212 46 30 77 0 43 43 106 107 62 0 1 125 chain 6892 chr9 141213431 + 17197413 17197492 L1PA5 6144 - 8 87 178243 79 chain 362014 chr9 141213431 + 17198608 17203542 L1PA7 6471 - 19 4718 11319 57 1 62 527 314 0 60 1 2 42 0 1 84 0 3 15 2 1 113 6 7 59 3 4 134 1 0 4 0 1 284 7 9 361 0 1 42 0 1 4 1 0 45 0 4 432 1 0 83 1 0 174 1 0 235 0 2 33 15 16 53 3 1 203 0 1 397 0 12 132 0 3 102 22 5 120 0 2 273 1 0 67 0 1 230 0 2 94 0 4 95 chain 15537 chr9 141213431 + 17205191 17205475 LTR66 600 - 0 269 139781 31 1 2 5 1 0 9 4 2 52 29 0 10 1 0 34 0 17 22 9 7 21 0 2 55 chain 44443 chr9 141213431 + 17206652 17207341 LTR66 600 + 0 600 63643 40 19 7 36 4 0 180 0 1 110 71 0 31 11 9 58 6 5 123 chain 530899 chr9 141213431 + 17210079 17216191 L1PA5 6144 - 16 6144 4094 509 1 5 114 0 5 705 1 2 539 1 2 738 0 1 337 1 0 801 0 2 934 0 2 553 13 14 865 chain 19065 chr9 141213431 + 17222327 17222699 THE1A 353 + 0 353 129923 15 8 6 26 0 1 15 0 1 4 29 26 14 57 43 66 2 0 136 chain 6663 chr9 141213431 + 17226939 17227012 L1PA6 6164 - 6 79 179965 73 chain 11530 chr9 141213431 + 17243985 17244163 L1M1 2793 - 98 276 154183 10 1 0 14 1 0 43 12 14 97 chain 314691 chr9 141213431 + 17256976 17260451 L1PA3long 6157 - 0 3479 12819 1649 0 4 358 0 1 215 1 0 1252 chain 69610 chr9 141213431 + 17261734 17262733 L1PA8 5853 + 4848 5847 48570 93 0 1 4 1 0 10 0 5 46 0 2 44 11 7 33 11 15 456 1 0 39 6 5 70 11 14 5 5 0 42 25 21 21 0 1 65 chain 14411 chr9 141213431 + 17262776 17262990 L1PA16 3655 - 1973 2185 143177 36 7 3 123 7 8 25 0 1 16 chain 536936 chr9 141213431 + 17263042 17269179 L1PA4 6152 - 1 6146 3319 1649 0 4 816 1 0 54 0 4 585 0 1 1704 0 2 96 1 0 4 1 2 130 3 4 343 4 0 177 1 0 66 1 0 179 0 3 322 chain 52039 chr9 141213431 + 17283031 17284984 L1PA10 4194 - 44 1829 15073 34 3 0 232 8 0 59 1 0 67 1 2 310 0 2 226 1 0 35 183 0 8 0 1 10 0 3 24 8 21 140 0 1 19 1 0 27 0 3 223 0 4 50 5 6 20 1 0 217 4 5 36 chain 555953 chr9 141213431 + 17285001 17291032 L1PA2 6032 - 0 6031 730 3685 0 1 124 1 0 2221 chain 58887 chr9 141213431 + 17291032 17293242 L1PA10 4194 - 1829 4019 15073 80 0 1 58 0 4 79 13 6 106 7 9 33 1 0 432 1 4 18 0 4 375 3 0 195 0 1 5 1 0 54 1 5 34 1 0 136 10 11 188 0 3 26 0 9 51 33 45 13 1 0 6 1 0 8 6 5 5 1 0 19 2 0 15 62 36 15 2 0 19 11 6 5 1 0 9 2 0 10 32 23 24 chain 84467 chr9 141213431 + 17293939 17295322 LTR12C 1709 - 0 1640 41730 84 4 3 58 0 101 49 0 5 181 11 4 13 11 0 3 9 0 66 11 378 25 41 0 191 0 7 68 158 0 171 7 0 6 9 18 14 0 2 135 0 1 4 1 0 53 chain 5474 chr9 141213431 + 17327005 17327072 L1MC2 1988 + 1852 1919 190263 67 chain 118849 chr9 141213431 + 17353751 17355177 LTR12C 1709 + 0 1709 31474 262 0 1 314 2 1 122 2 278 133 1 0 113 0 4 180 8 12 289 chain 19404 chr9 141213431 + 17361065 17361279 L1PA4 6152 - 5 219 128933 214 chain 58997 chr9 141213431 + 17362739 17363452 L1PA7 6471 - 5 731 53400 7 3 0 251 1 4 174 1 12 52 0 2 224 chain 45262 chr9 141213431 + 17395807 17396360 MER41A 554 + 0 554 62756 541 0 1 12 chain 39728 chr9 141213431 + 17397203 17397735 MER41A 554 - 24 554 69718 129 1 0 13 0 1 170 11 8 116 6 7 86 chain 17764 chr9 141213431 + 17412505 17412741 MER47A 366 + 75 318 133534 64 4 0 92 0 11 76 chain 75756 chr9 141213431 + 17445358 17446326 LTR5_Hs 974 + 0 974 45616 289 0 1 179 0 1 186 1 0 163 8 15 19 21 19 102 chain 15323 chr9 141213431 + 17449227 17449399 L1PA2 6032 - 111 283 140416 172 chain 9499 chr9 141213431 + 17449399 17449506 L1PA2 6032 + 5925 6032 163080 107 chain 2803 chr9 141213431 + 17528679 17528740 MER90a 614 + 404 490 228692 26 18 43 17 chain 22738 chr9 141213431 + 17529417 17529768 L1PA8 5853 - 1 329 116880 48 18 5 39 4 0 19 2 1 51 9 7 72 2 0 46 1 0 40 chain 541812 chr9 141213431 + 17539559 17545565 L1PA3long 6157 + 0 6145 2543 151 0 1 624 0 128 262 0 1 1744 0 1 2398 0 4 339 2 0 104 0 3 107 0 3 275 chain 108627 chr9 141213431 + 17546308 17547697 L1PA10 4194 + 2767 4159 34532 187 0 1 524 8 9 41 6 10 304 0 2 105 0 1 131 3 1 33 3 0 34 1 0 9 chain 18349 chr9 141213431 + 17568251 17568501 L1PA5 6144 - 3 245 131937 10 9 0 125 13 14 93 chain 4004 chr9 141213431 + 17569220 17569371 MER5A 189 - 24 174 207330 35 90 89 26 chain 84143 chr9 141213431 + 17569838 17570861 L1PA7 6471 - 10 1028 41840 758 1 0 74 9 6 84 2 1 95 chain 54608 chr9 141213431 + 17576245 17576841 L1PA3long 6157 - 0 599 55963 12 0 3 584 chain 28246 chr9 141213431 + 17586486 17586860 THE1C 375 - 0 375 92131 26 1 0 109 13 16 38 1 0 186 chain 452919 chr9 141213431 + 17641442 17647115 L1PA7 6471 - 3 5753 8656 666 0 81 17 0 1 82 1 0 147 0 5 65 0 2 340 0 3 67 4 6 45 40 0 414 0 6 6 12 9 18 0 1 72 12 23 104 35 76 209 0 1 170 1 0 218 2 0 86 1 0 6 0 1 35 0 8 171 0 1 37 0 4 617 29 7 17 0 1 91 26 0 1318 9 13 226 1 0 194 1 2 61 chain 303329 chr9 141213431 + 17677646 17681072 L1PA4 6152 - 17 3447 13271 95 0 1 146 0 1 200 7 1 389 0 4 940 0 4 1649 chain 86036 chr9 141213431 + 17681495 17682662 L1PA8A 6298 + 5124 6290 41141 206 2 0 66 0 1 92 0 7 55 0 4 37 21 0 94 0 4 203 4 5 197 12 16 47 1 0 21 12 14 97 chain 29687 chr9 141213431 + 17685544 17685861 L1PA2 6032 - 1101 1418 85188 317 chain 100388 chr9 141213431 + 17685861 17686949 L1PA2 6032 + 4939 6031 36658 243 0 4 845 chain 23028 chr9 141213431 + 17696454 17696784 THE1C 375 - 47 375 115497 72 15 9 10 7 9 46 0 1 67 0 1 113 chain 3390 chr9 141213431 + 17700850 17700891 MADE1 96 + 55 96 217281 41 chain 20997 chr9 141213431 + 17710091 17710389 THE1C 375 + 0 375 123929 55 6 81 147 9 11 81 chain 8712 chr9 141213431 + 17722526 17722627 L1PA3long 6157 - 0 101 167134 101 chain 176226 chr9 141213431 + 17728478 17730715 L1PA7 6471 - 3 2259 21337 145 9 10 419 0 3 10 19 24 63 0 1 166 1 4 113 0 3 382 0 1 145 1 0 304 0 4 25 8 7 20 2 0 10 0 2 239 1 0 89 5 6 28 0 1 25 1 0 7 chain 6792 chr9 141213431 + 17731223 17731315 MLT1A 405 + 0 95 179009 32 5 8 55 chain 12456 chr9 141213431 + 17733276 17733418 L1PA3long 6157 - 0 142 150439 142 chain 45091 chr9 141213431 + 17733435 17733931 L1PA3long 6157 + 5464 5959 62948 440 1 0 55 chain 38701 chr9 141213431 + 17736920 17737358 L1PA7 6471 + 6030 6465 71150 429 3 0 6 chain 75338 chr9 141213431 + 17754059 17755449 L1PA13 3608 - 120 1193 45853 20 1 0 20 9 5 47 2 0 9 1 0 48 4 3 63 2 0 79 0 1 15 314 5 13 1 0 27 2 1 18 6 8 309 0 1 4 1 0 76 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17832553 17832667 MER4E 760 + 576 690 164213 114 chain 67153 chr9 141213431 + 17908785 17909514 L1PA3long 6157 - 465 1195 49586 690 0 1 39 chain 41283 chr9 141213431 + 17909516 17909979 L1PA3long 6157 + 5683 6147 67553 211 0 1 252 chain 159844 chr9 141213431 + 17911685 17913479 L1PA3long 6157 - 0 1785 23345 1155 0 1 179 22 12 438 chain 239822 chr9 141213431 + 17913479 17945974 L1PA3long 6157 + 2953 6157 16786 344 0 1 1048 29292 0 1811 chain 132479 chr9 141213431 + 17923039 17924472 L1PA2 6032 - 1403 2853 27531 472 0 17 961 chain 129232 chr9 141213431 + 17924472 17925865 L1PA2 6032 + 4638 6031 28219 1393 chain 15423 chr9 141213431 + 17927579 17927837 MER2 342 + 72 333 140120 8 3 0 72 1 0 62 37 44 75 chain 166744 chr9 141213431 + 17972163 17974027 L1PA4 6152 - 1 1865 22427 1864 chain 32954 chr9 141213431 + 17974028 17974396 L1PA4 6152 + 3923 4291 79288 368 chain 36611 chr9 141213431 + 17999603 18000000 L1PA2 6032 - 2 399 74084 397 chain 65750 chr9 141213431 + 18028545 18029281 L1PA4 6152 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20 0 1 93 45 44 31 1 0 116 2 1 22 1 0 41 0 4 62 5 14 50 0 91 95 chain 35776 chr9 141213431 + 18336986 18337492 MLT2A2 560 + 0 560 75169 180 1 0 56 18 61 60 0 1 41 6 17 144 chain 21885 chr9 141213431 + 18340602 18340906 THE1B 368 + 64 368 120687 105 3 0 32 0 1 8 0 4 16 1 0 7 8 7 124 chain 36712 chr9 141213431 + 18345211 18345695 MER75 514 - 0 484 73938 202 9 8 171 0 1 102 chain 35730 chr9 141213431 + 18375575 18376094 LTR12 884 - 11 884 75222 16 5 241 171 0 2 66 2 0 21 1 92 14 1 0 69 1 0 42 11 0 22 0 40 77 chain 4031 chr9 141213431 + 18383863 18383927 MER5A1 166 - 11 78 206919 31 7 10 26 chain 3804 chr9 141213431 + 18393413 18393459 MER81 114 + 37 83 210325 46 chain 3169 chr9 141213431 + 18485029 18485149 MIR 256 - 50 169 221573 16 68 67 36 chain 30436 chr9 141213431 + 18508900 18509218 AluYb8 318 + 0 318 83553 318 chain 38729 chr9 141213431 + 18517415 18517847 L1PA2 6032 - 0 449 71110 316 0 17 116 chain 371558 chr9 141213431 + 18522440 18526707 L1PA5 6144 - 0 4273 11039 259 10 9 70 0 1 1405 0 2 1228 1 0 178 6 5 411 0 2 264 0 4 435 chain 3047 chr9 141213431 + 18540315 18540347 U2 167 - 135 167 224051 32 chain 4289 chr9 141213431 + 18555953 18556001 L1PA6 6164 + 6114 6162 203359 48 chain 509890 chr9 141213431 + 18558022 18564468 L1PA7 6471 - 14 6471 6175 664 1 0 176 0 3 293 0 1 365 1 0 749 0 1 202 0 1 5 6 3 139 0 5 13 3 1 105 1 3 172 3 7 18 5 2 32 1 0 79 26 0 318 0 4 271 0 1 17 0 4 152 1 2 15 0 2 465 0 4 92 8 9 162 0 1 30 1 2 305 1 2 164 0 3 96 3 6 5 0 2 5 1 0 57 0 1 530 12 13 202 4 3 61 0 2 76 154 155 179 chain 35316 chr9 141213431 + 18578670 18579049 L1PA2 6032 - 445 824 75776 379 chain 41471 chr9 141213431 + 18579052 18579504 L1PA2 6032 + 5578 6030 67322 452 chain 6708 chr9 141213431 + 18583095 18583178 THE1B-int 1605 + 0 83 179631 83 chain 34000 chr9 141213431 + 18607593 18607985 L1PA4 6152 - 17 409 77617 392 chain 501658 chr9 141213431 + 18644940 18650540 L1PA3long 6157 - 553 6157 6746 1818 0 1 357 0 1 24 0 1 231 7 8 2309 9 1 7 0 8 838 chain 542146 chr9 141213431 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70911 460 2 0 8 chain 15682 chr9 141213431 + 18993114 18993333 L1PA8 5853 - 0 215 139323 93 1 0 19 2 1 52 8 6 44 chain 14315 chr9 141213431 + 18999634 19000370 SVA_F 1814 + 375 1276 143509 56 50 86 31 49 9 30 34 33 6 3 0 35 288 405 32 11 110 31 47 4 33 chain 3017 chr9 141213431 + 19000135 19000170 SVA_F 1814 + 396 431 224677 35 chain 316954 chr9 141213431 + 19000718 19004866 L1PA6 6164 + 2282 6156 12727 4 1 0 47 0 1 261 9 7 331 305 0 194 0 1 374 1 5 16 2 0 267 1 2 355 3 4 1053 5 9 83 0 4 7 1 4 308 10 28 343 4 3 163 chain 2947 chr9 141213431 + 19013160 19013191 U2 167 - 136 167 226128 31 chain 54092 chr9 141213431 + 19021671 19022401 LTR12_ 688 + 0 688 56299 93 25 0 49 1 2 125 18 0 419 chain 24291 chr9 141213431 + 19024329 19024601 L1PA4 6152 + 5880 6151 108702 123 1 0 148 chain 2997 chr9 141213431 + 19026044 19026097 L1MA4 2864 + 2746 2801 225085 20 10 12 23 chain 119461 chr9 141213431 + 19035485 19037355 THE1A-int 1579 + 0 1579 31238 248 0 1 4 4 3 49 0 1 176 319 0 155 8 11 4 1 0 4 0 1 321 0 24 507 1 0 20 7 8 42 chain 25154 chr9 141213431 + 19035980 19036263 L1PA7 6471 + 6187 6470 103992 283 chain 70197 chr9 141213431 + 19037994 19038764 L1PA3long 6157 + 5386 6157 48310 644 0 1 126 chain 25106 chr9 141213431 + 19044582 19044869 AluY 311 + 3 291 104249 52 0 1 235 chain 30427 chr9 141213431 + 19045026 19045344 AluYb8 318 + 0 318 83587 318 chain 15487 chr9 141213431 + 19045896 19046101 AluSp 311 + 93 303 139931 77 8 7 69 0 6 51 chain 24376 chr9 141213431 + 19063959 19064254 AluSp 311 - 6 301 108214 295 chain 22211 chr9 141213431 + 19080796 19081092 AluSp 311 + 13 295 119297 32 13 8 232 9 0 10 chain 26875 chr9 141213431 + 19115298 19115604 AluYk4 311 - 5 311 96721 306 chain 6617 chr9 141213431 + 19130102 19130205 LTR49 580 + 0 102 180322 54 2 0 21 5 6 21 chain 9166 chr9 141213431 + 19140925 19141033 LTR8 732 + 165 273 164728 108 chain 21966 chr9 141213431 + 19156450 19156714 AluSp 311 + 1 258 120366 92 7 0 165 chain 24410 chr9 141213431 + 19166357 19166664 AluSg7 307 - 0 302 108029 7 6 0 168 0 1 126 chain 13346 chr9 141213431 + 19166669 19166909 MSTA 426 + 169 426 146902 37 4 0 8 4 7 15 26 24 32 5 25 109 chain 11447 chr9 141213431 + 19167046 19167288 L1PA16 3655 - 36 270 154510 16 50 41 115 32 33 29 chain 35570 chr9 141213431 + 19193640 19194063 THE1D-int 1627 - 1204 1627 75452 160 0 1 225 1 0 37 chain 4835 chr9 141213431 + 19196085 19196146 L1MB5 1630 + 3 64 196962 61 chain 7282 chr9 141213431 + 19197696 19197790 LTR23 429 + 205 298 175570 74 1 0 19 chain 22994 chr9 141213431 + 19248386 19248666 AluSp 311 - 11 290 115647 168 1 0 111 chain 118790 chr9 141213431 + 19250524 19252037 THE1B-int 1605 - 70 1605 31494 355 17 15 566 1 0 141 1 26 432 chain 27280 chr9 141213431 + 19260694 19265011 L1MA3 4352 - 996 3331 95337 57 0 1 95 3766 1765 43 0 7 95 42 65 8 11 0 135 6 5 59 chain 88575 chr9 141213431 + 19265458 19266494 L1PA5 6144 - 5 1037 40160 135 1 2 4 1 0 326 2 0 319 3 1 245 chain 39644 chr9 141213431 + 19266494 19266936 L1PA5 6144 + 4652 5094 69706 442 chain 21959 chr9 141213431 + 19271591 19271884 AluSp 311 + 10 299 120390 61 11 10 56 4 5 72 5 1 84 chain 4565 chr9 141213431 + 19285333 19285539 L1MB8 1703 - 27 162 200049 14 3 0 14 130 62 45 chain 5595 chr9 141213431 + 19314473 19314552 L1PB1 5432 + 5346 5422 189133 24 1 0 21 1 0 13 1 0 18 chain 3213 chr9 141213431 + 19344311 19344348 MLT1A0 366 - 38 75 220698 37 chain 13180 chr9 141213431 + 19362949 19363225 MLT1B 390 - 0 259 147545 97 17 13 32 0 2 16 72 57 42 chain 8409 chr9 141213431 + 19381827 19381926 L1MB5 1630 - 707 806 168795 99 chain 28916 chr9 141213431 + 19392279 19392592 AluYa5 310 - 0 310 89389 184 3 0 126 chain 24001 chr9 141213431 + 19394162 19394456 AluY 311 + 23 311 110323 100 9 4 96 1 0 88 chain 7679 chr9 141213431 + 19394505 19394624 L1MCa 1829 + 1462 1584 173050 22 1 0 60 8 12 28 chain 8212 chr9 141213431 + 19399833 19399949 MER5A1 166 + 17 125 169877 99 8 0 9 chain 25388 chr9 141213431 + 19401429 19401768 THE1B 368 + 0 356 102748 44 0 15 79 0 4 24 10 8 182 chain 79036 chr9 141213431 + 19402916 19403938 MER11A 1151 + 0 1151 44036 57 0 98 134 8 5 30 0 2 62 0 1 54 0 3 85 0 7 21 1 0 246 2 1 28 5 28 109 1 2 112 1 0 66 chain 160474 chr9 141213431 + 19416924 19418852 L1PA7 6471 + 4508 6470 23274 163 0 4 260 2 1 48 19 22 48 0 5 164 0 1 48 0 8 296 0 8 38 0 2 79 0 1 553 0 3 210 chain 143344 chr9 141213431 + 19433153 19434755 SVA_D 2077 - 0 2070 25590 535 0 225 187 0 49 38 2 13 39 0 83 17 0 40 774 0 60 10 chain 12525 chr9 141213431 + 19444058 19444561 MER30 238 - 0 186 150135 78 1 7 46 14 0 3 309 0 52 chain 29061 chr9 141213431 + 19463753 19464272 MER1A 529 - 0 488 88717 55 47 32 52 55 0 23 0 2 222 26 63 39 chain 5274 chr9 141213431 + 19466202 19466267 MLT1F 544 - 79 144 192273 65 chain 68749 chr9 141213431 + 19499151 19499999 L1PA7 6471 - 4 850 48923 8 3 0 149 1 0 24 0 1 44 0 4 227 2 0 5 0 2 299 4 1 82 chain 310196 chr9 141213431 + 19501450 19505513 L1P3 4156 - 17 4141 12996 23 1 0 9 2 0 50 2 1 453 1 0 32 1 8 10 1 2 51 12 0 58 0 3 198 5 7 355 4 21 77 10 11 249 0 1 4 1 0 5 1 2 343 0 3 24 0 3 110 2 1 55 9 26 173 1 5 149 0 3 253 0 1 17 1 0 4 0 1 58 4 20 295 0 1 64 14 14 135 1 0 330 7 0 13 1 0 85 6 5 65 4 13 225 chain 7882 chr9 141213431 + 19507073 19507186 MER47A 366 + 119 233 171799 11 5 6 97 chain 62853 chr9 141213431 + 19534373 19536130 L1PA7 6471 - 17 1791 10035 11 1 0 4 0 1 204 5 4 527 2 3 36 2 0 47 0 3 11 0 4 533 0 8 42 0 2 66 0 1 110 0 1 156 chain 555876 chr9 141213431 + 19536198 19542228 L1PA2 6032 - 0 6030 739 5776 1 0 45 0 1 208 chain 120625 chr9 141213431 + 19542230 19545602 L1PA7 6471 - 1791 5187 10035 46 1 0 23 1 4 291 0 5 42 1 0 8 0 1 14 4 3 380 28 36 248 0 3 35 0 1 37 7 0 220 16 18 402 0 1 161 0 2 67 4 1 89 0 1 19 0 1 357 0 4 759 0 5 112 chain 182742 chr9 141213431 + 19565020 19567114 L1PA5 6144 + 4041 6141 20710 119 0 1 54 3 0 389 4 0 27 0 5 661 0 4 378 0 2 300 8 16 7 7 0 137 chain 5030 chr9 141213431 + 19577476 19577539 Tigger4b 360 + 288 360 194836 9 0 9 54 chain 16103 chr9 141213431 + 19577876 19578225 L1PB1 5432 + 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156 0 1 63 0 2 75 2 0 42 1 0 68 2 4 10 0 2 84 5 4 26 1 0 55 1 0 20 chain 7151 chr9 141213431 + 19693104 19693188 L1PA5 6144 - 6 90 176399 84 chain 66421 chr9 141213431 + 19705653 19706377 L1P1 4361 - 1440 2164 49905 724 chain 28208 chr9 141213431 + 19706377 19706675 AluYg6 310 - 12 310 92276 298 chain 286780 chr9 141213431 + 19706700 19709908 L1PA4 6152 + 2934 6151 14238 754 0 2 1507 1 2 112 0 1 616 1 5 35 0 1 182 chain 4673 chr9 141213431 + 19711315 19711406 Charlie1a 1436 + 1323 1415 198843 27 21 22 43 chain 62540 chr9 141213431 + 19734104 19734800 L1PA4 6152 - 1221 1923 51659 539 0 1 33 0 4 113 0 1 11 chain 33422 chr9 141213431 + 19734800 19735173 L1PA4 6152 + 4932 5306 77969 369 0 1 4 chain 40556 chr9 141213431 + 19735173 19735623 L1PA4 6152 + 5309 5759 68501 450 chain 33930 chr9 141213431 + 19735624 19736003 L1PA4 6152 + 5759 6140 77727 251 0 1 27 0 1 101 chain 525445 chr9 141213431 + 19760366 19767737 L1PA7 6471 - 1 6449 4635 4 1 0 143 8 0 9 0 7 9 0 2 211 1 0 38 297 3 32 0 2 334 658 6 53 0 3 622 17 7 162 1 0 143 0 4 396 7 11 67 0 1 704 1 0 47 9 21 325 0 4 207 0 4 257 1 0 547 0 1 218 0 1 716 0 5 44 0 3 680 15 8 387 chain 54043 chr9 141213431 + 19761487 19762111 L1PA4 6152 - 6 631 56333 144 2 1 21 1 3 456 chain 23381 chr9 141213431 + 19779778 19780084 AluY 311 + 3 302 113752 120 3 0 44 0 1 55 1 0 69 2 0 5 2 0 5 chain 25503 chr9 141213431 + 19780261 19780563 AluSg4 309 - 7 309 102211 302 chain 22199 chr9 141213431 + 19780615 19780891 AluYc 301 + 13 292 119358 32 11 12 63 0 2 170 chain 9956 chr9 141213431 + 19795828 19795939 L1PA4 6152 + 5701 5812 160799 111 chain 29912 chr9 141213431 + 19795940 19796268 L1PA4 6152 + 5812 6140 85058 328 chain 65811 chr9 141213431 + 19801034 19801814 LTR17 781 - 0 781 50188 454 0 1 326 chain 141902 chr9 141213431 + 19818404 19820424 L1PB1 5432 + 3517 5424 25839 194 10 18 482 1 0 249 0 1 124 0 1 25 14 0 10 0 1 182 7 11 286 95 13 20 1 0 13 20 15 5 2 0 53 2 1 16 1 0 4 2 1 39 1 0 12 27 16 18 9 6 13 2 0 24 1 0 21 1 0 13 1 0 20 chain 122315 chr9 141213431 + 19823695 19825182 L1PA8 5853 + 4370 5853 30278 476 1 0 163 0 2 553 1 0 44 2 0 80 1 0 10 14 15 23 7 6 21 1 0 90 chain 378749 chr9 141213431 + 19833095 19837777 L1P1 4361 + 1 4341 10799 1102 2 3 2046 1 0 764 0 1 143 340 0 91 1 0 154 1 0 23 2 1 12 chain 30165 chr9 141213431 + 19837168 19837486 AluYb8 318 + 0 318 84284 318 chain 293601 chr9 141213431 + 19852761 19856760 L1PA10 4194 - 44 4019 13793 34 3 0 40 2 0 57 0 4 255 9 17 74 0 1 448 2 1 83 0 4 215 1 4 78 0 3 84 3 2 116 1 0 104 0 9 45 8 7 239 0 4 80 13 14 225 0 1 430 15 16 267 0 1 60 1 4 237 0 1 44 0 3 351 1 0 4 12 9 72 1 0 8 7 0 13 120 88 8 1 0 15 9 7 14 1 0 9 1 0 9 2 0 12 8 4 9 2 0 8 6 3 8 2 0 13 chain 10482 chr9 141213431 + 19884694 19884825 MER47A 366 + 89 223 158327 22 1 4 108 chain 321477 chr9 141213431 + 19905881 19909478 L1PA4 6152 + 2543 6140 12538 871 0 2 897 7 0 991 0 4 730 0 1 101 chain 52648 chr9 141213431 + 19910917 19911494 L1PA3long 6157 - 0 577 57214 577 chain 8003 chr9 141213431 + 19943988 19944088 L1PA16 3655 + 3469 3569 171038 100 chain 27889 chr9 141213431 + 19948573 19948864 AluYd8 298 + 0 291 93401 291 chain 76096 chr9 141213431 + 19962195 19963041 L1PA3long 6157 - 1333 2185 45374 158 0 1 307 0 4 50 0 1 331 chain 120215 chr9 141213431 + 19963041 19964363 L1PA3long 6157 + 4821 6143 30975 1322 chain 38668 chr9 141213431 + 19991063 19991551 MLT2A2 560 - 48 560 71197 99 6 17 216 10 18 87 0 1 55 0 4 15 chain 15950 chr9 141213431 + 20006362 20006618 L1MA3 4352 + 4107 4352 138516 7 3 0 88 0 2 13 0 1 15 3 0 25 1 0 25 1 0 5 1 0 29 1 0 9 8 4 22 chain 72326 chr9 141213431 + 20010609 20011421 L1PA5 6144 - 0 812 47323 812 chain 22202 chr9 141213431 + 20012144 20012487 THE1B 368 - 0 368 119339 125 29 42 5 3 0 141 12 27 28 chain 36183 chr9 141213431 + 20017461 20018296 MLT2A2 560 - 0 560 74654 69 0 1 78 5 16 95 16 26 77 15 31 30 8 0 85 305 0 52 chain 16916 chr9 141213431 + 20019361 20019553 L1PA7 6471 - 1183 1375 135581 192 chain 99355 chr9 141213431 + 20019553 20020721 L1PA7 6471 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20162398 20165142 L1PA3long 6157 + 3414 6157 16384 1963 2 1 779 chain 39460 chr9 141213431 + 20170211 20170732 LTR10G 522 - 0 522 70074 14 5 3 54 1 3 95 1 0 52 0 1 187 1 0 93 0 2 18 chain 347060 chr9 141213431 + 20170732 20175360 L1PB1 5432 + 822 5411 11692 59 7 4 5 0 3 77 1 0 387 0 1 26 0 4 8 0 5 443 0 4 431 0 10 86 0 4 19 0 3 97 4 0 97 0 1 205 18 19 22 1 0 157 0 1 4 0 13 17 3 4 60 0 1 183 0 2 442 2 0 5 2 0 6 13 1 197 0 1 21 1 0 37 5 11 6 6 0 233 0 1 185 6 0 9 15 16 174 0 1 168 0 1 253 9 8 37 38 6 14 3 0 17 1 0 13 1 0 9 7 3 9 2 0 51 1 0 17 1 0 45 1 0 15 3 0 6 15 7 10 10 8 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 7 chain 113583 chr9 141213431 + 20181370 20182777 L1PA6 6164 + 4740 6151 33205 14 0 8 7 8 0 176 5 6 363 0 8 271 11 4 410 14 15 64 0 1 64 chain 14941 chr9 141213431 + 20183980 20184170 L1MA8 2339 + 1369 1558 141497 99 1 0 90 chain 512619 chr9 141213431 + 20230047 20235871 L1PA4 6152 - 315 6146 5910 81 0 3 5 3 0 427 1 2 2226 0 8 5 0 2 1910 0 1 529 0 1 61 1 0 92 0 1 23 6 0 454 chain 5254 chr9 141213431 + 20239220 20239394 MER53 195 - 27 192 192474 27 74 77 24 15 3 34 chain 4219 chr9 141213431 + 20260565 20260618 MSTD 398 - 0 53 204303 53 chain 85286 chr9 141213431 + 20265317 20266399 MER11B 1079 + 0 1074 41426 259 3 0 409 1 0 104 8 2 105 0 1 169 7 8 17 chain 96951 chr9 141213431 + 20277119 20278239 L1PA5 6144 + 5018 6140 37573 128 0 1 147 1 0 339 0 1 362 0 1 143 chain 32527 chr9 141213431 + 20278255 20278814 THE1C-int 1605 - 1079 1574 79984 29 0 1 13 1 0 4 2 3 20 85 11 47 1 3 256 3 4 18 1 4 30 7 10 42 chain 3921 chr9 141213431 + 20292530 20292589 MLT1C 463 - 15 75 208539 37 3 4 19 chain 59151 chr9 141213431 + 20366058 20366780 L1PA7 6471 - 10 738 53302 144 18 19 50 2 1 6 0 4 105 0 1 229 0 1 168 chain 6515 chr9 141213431 + 20366780 20366852 L1PA7 6471 + 5669 5741 181123 72 chain 108089 chr9 141213431 + 20370810 20372278 Tigger1 2417 + 462 1944 34690 20 0 1 38 17 19 227 11 13 187 0 3 69 0 3 109 2 0 42 0 2 7 2 0 199 18 21 127 1 0 228 0 3 164 chain 12002 chr9 141213431 + 20420700 20420837 L1PA5 6144 - 5 142 152189 137 chain 22853 chr9 141213431 + 20452190 20452515 THE1C 375 + 0 342 116322 69 1 15 24 8 10 74 8 7 5 0 2 136 chain 15481 chr9 141213431 + 20498521 20498744 MER30 238 + 0 238 139961 107 14 23 23 2 8 77 chain 29533 chr9 141213431 + 20501467 20501784 AluYb9 318 + 0 317 86507 317 chain 7561 chr9 141213431 + 20533456 20533675 L1MA9 1812 + 1541 1724 173794 25 3 1 12 1 0 37 93 61 24 1 0 23 chain 27992 chr9 141213431 + 20542237 20542536 AluYb8 318 - 7 306 93025 299 chain 20490 chr9 141213431 + 20571445 20571687 L1PA7 6471 - 5 247 125656 185 1 0 6 0 1 50 chain 24621 chr9 141213431 + 20582556 20582894 THE1A 353 - 20 353 106882 20 11 4 111 1 0 56 0 4 27 1 0 111 chain 122956 chr9 141213431 + 20582894 20584442 THE1A-int 1579 - 0 1579 30065 252 0 1 27 1 22 64 2 1 14 1 3 237 1 0 56 1 2 64 1 0 533 0 1 228 9 17 8 0 1 4 1 0 44 chain 25340 chr9 141213431 + 20584442 20584797 THE1A 353 - 0 346 103020 40 11 4 8 1 0 38 0 1 61 1 0 91 2 0 6 0 1 96 chain 109436 chr9 141213431 + 20587615 20588817 L1PA3long 6157 - 774 1976 34335 1202 chain 69913 chr9 141213431 + 20588818 20589593 L1PA3long 6157 + 5381 6157 48429 442 1 2 332 chain 19866 chr9 141213431 + 20594239 20594478 MER41-int 2638 + 2393 2636 127606 139 0 4 100 chain 285706 chr9 141213431 + 20655631 20658801 L1HS 6032 - 2860 6030 14306 2916 1 0 183 0 1 70 chain 231744 chr9 141213431 + 20751161 20753704 L1PA3long 6157 - 0 2546 17216 315 0 3 2228 chain 23871 chr9 141213431 + 20756936 20757220 AluSp 311 - 20 304 111077 284 chain 33395 chr9 141213431 + 20758366 20758740 L1PA3long 6157 - 0 374 78577 374 chain 18991 chr9 141213431 + 20758740 20758977 L1P1 4361 + 4107 4341 130133 43 1 0 155 1 0 23 2 1 12 chain 164631 chr9 141213431 + 20766826 20768616 L1PA2 6032 - 3 1793 22719 149 0 1 1372 1 0 268 chain 27857 chr9 141213431 + 20777819 20778112 AluYd8 298 + 0 293 93506 293 chain 460886 chr9 141213431 + 20795845 20801145 L1PA4 6152 - 12 5302 8365 36 0 19 1209 1 0 528 0 4 33 33 0 1134 1 0 62 0 1 213 0 1 2050 chain 7871 chr9 141213431 + 20847293 20847395 L1MB8 1703 - 152 254 171863 102 chain 3878 chr9 141213431 + 20859746 20859882 L1MB8 1703 + 1449 1585 209186 26 1 0 4 71 72 34 chain 5678 chr9 141213431 + 20867505 20867568 L1P1 4361 + 4159 4222 188317 63 chain 23774 chr9 141213431 + 20871658 20871917 L1PA3long 6157 + 5898 6157 111634 259 chain 172210 chr9 141213431 + 20919073 20920972 L1PA3long 6157 + 4255 6157 21792 415 0 3 1484 chain 96880 chr9 141213431 + 20933219 20934718 L1PB1 5432 - 12 1433 37590 16 1 0 13 1 0 21 1 0 24 2 0 14 54 38 13 7 6 39 1 0 11 8 7 6 1 0 42 18 12 12 1 0 8 1 0 24 31 11 99 0 1 190 1 9 164 0 1 11 3 0 63 2 0 110 0 3 6 1 0 79 0 1 85 8 0 33 26 1 49 17 13 14 0 4 168 chain 29959 chr9 141213431 + 20934728 20935136 L1PB1 5432 + 3577 3983 84941 121 12 8 24 7 5 90 0 4 154 chain 183073 chr9 141213431 + 20936678 20938725 L1PA4 6152 + 4081 6143 20674 83 0 9 1724 0 1 234 0 5 6 chain 21005 chr9 141213431 + 20939751 20939998 L1PA5 6144 - 0 245 123890 11 3 1 233 chain 41095 chr9 141213431 + 20960586 20961061 L1PA5 6144 - 1 467 67773 193 9 0 273 chain 6866 chr9 141213431 + 20984545 20984622 Charlie1 1172 - 204 281 178457 77 chain 210523 chr9 141213431 + 21020987 21023365 L1PA5 6144 + 3741 6132 18466 1194 0 4 331 0 6 18 0 2 107 0 1 728 chain 23278 chr9 141213431 + 21023573 21023862 AluSc 308 - 11 297 114302 35 6 5 126 2 0 120 chain 3599 chr9 141213431 + 21052725 21052768 MER5A1 166 + 93 136 213667 43 chain 8418 chr9 141213431 + 21053334 21053446 MER57A1 433 - 314 433 168738 77 0 7 35 chain 69595 chr9 141213431 + 21063243 21064030 L1PA4 6152 + 5359 6152 48575 719 0 1 62 0 5 6 chain 128923 chr9 141213431 + 21086939 21088618 L1P3 4156 + 15 1718 28328 222 25 24 58 2 1 291 0 1 62 36 50 141 4 0 215 0 1 37 0 1 309 0 1 128 0 5 99 10 17 40 chain 170444 chr9 141213431 + 21116301 21118604 L1PBa 3878 - 739 3099 21999 89 0 2 8 0 1 6 1 0 98 10 12 213 0 3 503 18 8 472 11 55 6 7 0 40 0 1 69 0 2 102 0 2 65 3 1 84 1 0 50 0 1 257 5 0 8 11 17 75 5 19 61 0 4 15 0 1 10 chain 158742 chr9 141213431 + 21127200 21129114 L1PA7 6471 + 4524 6467 23495 50 0 1 76 0 1 10 6 10 264 0 30 123 0 6 631 8 4 20 9 0 717 chain 4735 chr9 141213431 + 21132477 21132547 MADE1 96 - 1 96 198105 23 1 26 46 chain 16058 chr9 141213431 + 21144173 21144352 L1PA4 6152 + 5973 6152 138184 179 chain 8410 chr9 141213431 + 21160239 21160335 HY3 101 - 5 101 168786 96 chain 9902 chr9 141213431 + 21169331 21169452 L1PA6 6164 + 6035 6156 161060 121 chain 6082 chr9 141213431 + 21172376 21172455 MLT1A0 366 + 238 316 184564 25 1 0 53 chain 65145 chr9 141213431 + 21184567 21185419 L1PA8A 6298 - 342 1202 50503 382 1 4 73 15 19 103 4 0 31 0 5 243 chain 7376 chr9 141213431 + 21196230 21196321 L1PA8 5853 - 0 91 174924 91 chain 55682 chr9 141213431 + 21199740 21200572 L1PA8A 6298 - 342 1202 55318 58 0 1 17 12 13 186 8 9 97 15 19 59 4 0 6 0 8 112 4 0 20 15 20 14 2 3 49 7 22 147 chain 67249 chr9 141213431 + 21204141 21205022 L1PA8A 6298 - 342 1230 49545 382 1 4 73 5 8 116 4 0 25 0 5 275 chain 10145 chr9 141213431 + 21208818 21208947 L1PA6 6164 + 6035 6162 159871 117 2 0 10 chain 57847 chr9 141213431 + 21214771 21215710 L1PA8A 6298 - 7 1202 54066 71 37 264 76 12 13 186 17 18 87 9 13 66 4 0 6 0 8 10 10 11 86 4 0 15 0 1 5 9 14 76 13 28 4 0 1 136 chain 36235 chr9 141213431 + 21219708 21220110 L1PA3long 6157 - 3254 3656 74579 402 chain 292056 chr9 141213431 + 21220114 21223377 L1PA3long 6157 + 2889 6157 13898 535 0 2 731 0 3 1997 chain 10269 chr9 141213431 + 21223594 21223721 L1PA6 6164 + 6035 6162 159290 127 chain 18385 chr9 141213431 + 21224440 21224646 L1PA3long 6157 + 5950 6156 131831 206 chain 69453 chr9 141213431 + 21224945 21225930 L1PA8A 6298 - 10 1230 48631 68 36 264 382 1 4 73 1 0 6 0 4 4 1 0 101 9 5 33 7 13 263 chain 5971 chr9 141213431 + 21236875 21236943 L1PA8A 6298 - 10 78 185505 68 chain 93148 chr9 141213431 + 21246763 21247802 L1PA3long 6157 - 5 1046 38614 149 1 3 889 chain 8241 chr9 141213431 + 21247851 21247945 L1MA5A 2387 + 1156 1250 169729 94 chain 15151 chr9 141213431 + 21255272 21255461 MER50 708 + 495 684 140908 189 chain 34454 chr9 141213431 + 21264327 21264759 MER57A1 433 + 0 433 76988 276 6 7 150 chain 390400 chr9 141213431 + 21269567 21276501 L1PA7 6471 - 3 4813 10442 152 0 1 6 1 2 175 0 1 338 1 0 90 9 8 62 18 9 720 0 5 98 64 0 124 0 8 426 0 1 220 14 13 181 0 1 62 2050 0 1066 8 0 58 18 0 55 4 6 58 0 2 356 0 4 374 6 8 120 chain 97972 chr9 141213431 + 21272346 21273509 L1PA5 6144 - 1 1175 37286 547 24 36 266 1 0 325 chain 75290 chr9 141213431 + 21273511 21274369 L1PA5 6144 + 4081 4945 45874 198 0 2 60 0 4 600 chain 9316 chr9 141213431 + 21290881 21290988 L1PA5 6144 + 6035 6142 163978 107 chain 301590 chr9 141213431 + 21297267 21300617 L1PA4 6152 - 1 3349 13341 2860 2 0 488 chain 86332 chr9 141213431 + 21310859 21311916 MER11B 1079 + 0 1079 41031 225 0 5 86 1 18 432 5 7 292 5 3 11 chain 97111 chr9 141213431 + 21342260 21343534 L1PA10 4194 - 1801 3075 37451 324 0 1 35 1 5 195 18 6 6 0 1 67 5 6 72 0 2 25 7 9 375 1 2 143 chain 126042 chr9 141213431 + 21343534 21345518 L1PA10 4194 + 2371 4144 29086 213 8 9 17 4 3 4 0 1 10 18 21 16 1 0 8 6 10 56 1 0 222 2 0 86 254 20 129 0 1 403 1 5 41 1 3 27 2 16 60 1 0 55 0 1 165 0 1 109 1 0 28 0 1 4 6 3 25 chain 13432 chr9 141213431 + 21344215 21344383 L1PA10 4194 + 3386 3554 146567 168 chain 48522 chr9 141213431 + 21345850 21346508 L1PA7 6471 + 5811 6470 60090 290 1 3 5 2 0 72 1 4 129 15 14 74 5 6 53 2 0 9 chain 26944 chr9 141213431 + 21354144 21354615 THE1B 368 + 13 368 96471 24 0 5 101 120 0 25 1 0 200 chain 142037 chr9 141213431 + 21373378 21374971 L1PA3long 6157 - 0 1595 25816 766 0 1 156 0 1 4 1 0 563 6 7 97 chain 18125 chr9 141213431 + 21413301 21413572 THE1A 353 + 85 353 132531 23 1 0 90 1 0 77 4 0 20 16 19 39 chain 249492 chr9 141213431 + 21425039 21428436 L1PA10 4194 - 33 3416 16282 11 1 0 23 13 10 50 0 1 452 17 16 414 7 4 44 0 1 456 54 39 162 0 1 4 1 0 352 3 0 7 0 3 61 1 0 338 5 6 169 1 0 75 0 6 36 6 5 23 1 0 5 0 1 9 58 60 178 11 12 349 chain 44174 chr9 141213431 + 21433873 21434384 MER9a2 513 + 0 513 63977 356 0 2 155 chain 223490 chr9 141213431 + 21457188 21459752 L1PA6 6164 + 3590 6158 17686 108 1 3 194 0 1 228 0 1 1877 15 15 141 chain 27404 chr9 141213431 + 21463360 21463714 THE1B 368 - 0 368 94955 33 0 2 134 2 0 25 1 0 122 0 15 37 chain 35837 chr9 141213431 + 21487327 21487735 LTR7 482 - 42 482 75080 56 0 2 85 0 31 18 1 0 248 chain 225770 chr9 141213431 + 21488274 21491043 HERVH-int 3825 - 828 3825 17541 120 0 263 603 0 4 282 13 40 904 0 3 12 0 2 7 0 1 30 1 0 6 0 1 20 2 1 38 37 15 14 3 0 9 5 18 24 1 0 10 1 0 38 68 0 309 0 11 212 chain 3265 chr9 141213431 + 21491045 21491079 LTR7 482 - 0 34 219675 34 chain 23068 chr9 141213431 + 21495061 21495342 AluSq10 312 + 11 292 115313 132 3 0 7 0 3 139 chain 491962 chr9 141213431 + 21536612 21541947 L1PA2 6032 + 3 6030 7273 93 0 688 1480 0 4 3762 chain 21173 chr9 141213431 + 21543860 21544204 THE1B 368 + 0 368 123293 44 23 38 88 1 0 28 35 45 125 chain 4892 chr9 141213431 + 21544572 21544678 L1PB3 3668 - 88 186 196352 11 5 1 31 14 12 22 1 0 3 1 0 18 chain 27543 chr9 141213431 + 21581188 21581501 AluSq10 312 + 0 312 94525 243 1 0 69 chain 24734 chr9 141213431 + 21610326 21610630 AluSp 311 - 9 310 106256 160 13 10 131 chain 6556 chr9 141213431 + 21618113 21618188 AluYc 301 + 10 85 180805 75 chain 116689 chr9 141213431 + 21622456 21624011 THE1A-int 1579 - 5 1579 32228 224 2 1 98 0 1 449 7 0 7 22 29 26 3 2 51 7 0 21 8 10 4 0 1 184 1 22 331 2 5 108 chain 523199 chr9 141213431 + 21645815 21652281 L1PA7 6471 - 5 6443 4850 198 0 9 645 3 0 366 0 1 25 0 1 543 0 4 416 12 3 495 49 0 54 31 35 118 0 4 20 0 1 25 1 0 70 1 0 271 6 9 115 0 1 144 1 5 180 1 5 381 0 1 296 0 1 201 13 7 261 1 0 802 0 3 565 0 1 156 chain 4317 chr9 141213431 + 21648519 21648566 L1PA7 6471 - 784 831 203001 47 chain 75216 chr9 141213431 + 21662082 21662950 L1PA4 6152 - 6 880 45915 67 0 1 319 1 5 459 0 1 22 chain 4973 chr9 141213431 + 21689745 21689808 LTR16A 446 - 172 317 195441 54 0 82 9 chain 187509 chr9 141213431 + 21697186 21699309 L1PA5 6144 - 0 2154 20291 843 0 4 716 0 1 54 0 1 80 0 21 79 0 4 351 chain 18132 chr9 141213431 + 21699311 21699523 7SLRNA 320 + 18 231 132515 133 0 1 79 chain 67807 chr9 141213431 + 21704891 21705638 L1PA3long 6157 + 5412 6157 49318 73 2 0 672 chain 13429 chr9 141213431 + 21713759 21713914 L1PA3long 6157 + 6002 6157 146580 155 chain 30978 chr9 141213431 + 21721969 21722336 L1PA5 6144 + 5774 6142 82553 43 0 1 73 1 0 110 0 1 140 chain 60629 chr9 141213431 + 21726887 21727654 LTR17 781 + 0 768 52504 172 3 1 154 1 0 23 0 3 55 4 5 355 chain 64084 chr9 141213431 + 21731549 21732260 L1PA5 6144 - 9 720 50971 711 chain 61434 chr9 141213431 + 21780298 21780974 L1PA5 6144 + 5456 6132 52138 676 chain 24570 chr9 141213431 + 21790340 21790640 AluSp 311 - 13 311 107141 170 1 0 3 1 0 125 chain 7280 chr9 141213431 + 21808749 21808839 MSTB2 466 + 374 464 175578 90 chain 535424 chr9 141213431 + 21819159 21825241 L1PA5 6144 - 18 6144 3530 832 1 0 512 0 2 115 4 12 94 0 8 367 0 1 721 4 0 998 0 2 473 0 15 41 0 1 184 0 1 333 0 5 252 0 3 17 0 2 401 0 1 733 chain 25153 chr9 141213431 + 21844751 21845044 AluY 311 + 0 297 103997 70 0 3 117 1 2 105 chain 4508 chr9 141213431 + 21845585 21845662 L1PB1 5432 + 3890 3952 200691 12 15 0 50 chain 34146 chr9 141213431 + 21846886 21847325 MLT2A1 477 + 0 477 77417 100 0 1 68 4 1 9 0 1 23 0 1 183 15 53 37 chain 342584 chr9 141213431 + 21847325 21851608 HERVL-int 5654 + 0 5635 11818 63 4 5 166 35 0 324 0 1 4 2 1 723 12 17 114 21 0 71 0 2 182 0 1 50 6 8 264 0 1 406 2 0 468 1 0 195 0 1 435 29 1426 290 0 1 416 chain 32995 chr9 141213431 + 21851616 21852043 MLT2A1 477 + 0 477 79223 169 4 1 9 0 1 23 0 1 181 3 54 38 chain 7813 chr9 141213431 + 21852043 21852219 L1PB1 5432 + 5114 5279 172229 24 12 10 8 2 0 3 2 0 9 3 1 44 26 23 43 chain 65956 chr9 141213431 + 21874698 21875521 L1PA7 6471 - 1 930 50121 152 7 10 97 4 21 119 1 0 60 0 1 118 1 82 108 0 2 79 1 4 76 chain 62684 chr9 141213431 + 21878747 21879588 L1PREC2 3366 - 2327 3164 51600 382 1 5 138 0 1 45 2 1 67 1 0 108 3 1 33 1 0 4 1 0 8 3 2 12 1 0 23 1 0 7 chain 60475 chr9 141213431 + 21887111 21887782 L1PA4 6152 - 0 671 52594 671 chain 20775 chr9 141213431 + 21888743 21889005 L1PBa 3878 + 1123 1389 124700 33 0 3 155 0 1 74 chain 20185 chr9 141213431 + 21894506 21894739 L1PA5 6144 + 5894 6128 126578 101 1 2 131 chain 306341 chr9 141213431 + 21895878 21899377 L1PA5 6144 + 2598 6129 13160 382 1 25 130 0 2 20 1 0 182 0 1 42 0 3 123 1 2 174 0 2 620 0 1 4 1 0 1818 chain 65656 chr9 141213431 + 21899810 21900876 L1PA15 4387 + 3302 4356 50271 475 0 5 31 2 0 17 2 8 7 0 1 45 3 1 16 1 0 22 8 7 72 40 41 54 1 0 21 7 5 53 7 6 19 4 0 8 2 1 38 81 68 6 0 3 24 chain 339016 chr9 141213431 + 21910907 21914791 L1PA5 6144 + 2257 6144 11922 319 0 2 592 1 0 338 1 0 836 0 4 279 1 2 251 0 1 299 6 4 810 1 2 64 2 0 84 chain 28644 chr9 141213431 + 21918068 21918373 AluYa5 310 + 0 306 90543 18 0 1 287 chain 19330 chr9 141213431 + 21919835 21920086 MER75B 242 - 0 242 129146 101 1 0 115 8 0 26 chain 33478 chr9 141213431 + 21933960 21934372 MER57A1 433 - 0 412 78443 11 1 0 144 0 1 256 chain 26026 chr9 141213431 + 21938947 21939293 THE1A 353 + 0 353 99914 105 6 5 91 9 17 135 chain 102069 chr9 141213431 + 21959075 21960418 LTR12C 1709 + 0 1709 36246 44 1 8 210 0 1 387 0 485 89 0 4 359 131 0 122 chain 6704 chr9 141213431 + 21960186 21960296 LTR12C 1709 + 1477 1587 146682 110 chain 171174 chr9 141213431 + 21962149 21964568 L1PB1 5432 - 2 2385 21917 6 1 0 4 1 0 16 1 0 13 1 0 18 1 0 9 27 25 12 3 0 19 13 5 7 3 0 15 1 0 44 1 0 18 1 0 49 3 1 9 18 13 13 1 0 20 1 0 11 7 0 330 3 11 57 0 2 82 11 6 180 1 0 4 0 1 27 0 1 136 2 1 166 0 1 201 1 2 71 6 8 80 19 0 261 4 2 67 0 5 35 0 1 27 0 1 127 1 0 36 0 14 46 5 0 15 0 1 51 chain 16169 chr9 141213431 + 21966289 21966519 LTR1 825 + 7 238 137843 36 0 1 9 10 11 19 1 0 155 chain 13807 chr9 141213431 + 21978121 21978277 L1PA4 6152 + 5996 6151 145235 144 1 0 11 chain 12908 chr9 141213431 + 21991194 21991413 MER30 238 + 0 238 148603 15 17 16 58 10 33 77 3 0 39 chain 61220 chr9 141213431 + 22014612 22015287 L1PA3long 6157 - 2 677 52246 241 1 0 95 0 1 338 chain 133344 chr9 141213431 + 22021308 22023445 L1PA13 3608 - 123 3515 27360 17 1 0 20 2 0 4 2 0 37 20 16 50 6 5 61 3 1 105 0 132 137 0 1 70 20 1157 424 0 2 25 4 5 113 0 1 42 0 1 15 0 6 6 13 7 31 1 5 76 0 2 40 0 19 223 2 0 97 1 0 16 3 1 15 1 0 2 1 0 8 0 4 5 2 1 17 6 2 16 2 0 17 1 0 15 1 0 122 20 17 18 64 55 21 55 48 19 6 4 16 chain 23516 chr9 141213431 + 22058741 22059083 THE1A 353 - 0 348 113035 34 7 11 110 1 0 60 1 0 28 13 16 69 0 1 19 chain 128399 chr9 141213431 + 22059088 22060654 THE1A-int 1579 - 0 1579 28477 172 0 1 393 0 4 559 0 8 442 chain 26455 chr9 141213431 + 22060654 22061013 THE1A 353 - 0 353 98221 78 4 0 73 1 0 61 1 0 30 1 0 86 0 1 24 chain 17875 chr9 141213431 + 22066782 22066981 L1PA5 6144 + 5702 5901 133177 199 chain 20554 chr9 141213431 + 22066981 22067225 L1PA5 6144 + 5902 6141 125459 233 5 0 6 chain 25587 chr9 141213431 + 22085436 22085739 AluY 311 + 0 302 101792 29 1 0 94 1 0 9 0 1 169 chain 482439 chr9 141213431 + 22089832 22095305 L1PA4 6152 - 0 5498 7644 6 0 5 838 0 2 949 0 4 94 0 1 314 0 1 256 1 0 386 0 1 118 1 0 368 0 4 397 0 1 35 0 1 236 0 1 712 2 7 384 0 1 376 chain 59865 chr9 141213431 + 22095305 22095986 L1P1 4361 - 1432 2119 52802 126 0 4 397 0 1 35 0 1 123 chain 4651 chr9 141213431 + 22126051 22126109 Tigger2a 444 - 64 125 199055 26 0 3 32 chain 9758 chr9 141213431 + 22152150 22152338 MLT1A0 366 + 127 314 161811 78 55 54 55 chain 525818 chr9 141213431 + 22177100 22183144 L1PA5 6144 + 68 6141 4599 26 1 2 605 0 1 1491 0 2 360 17 20 14 0 1 137 1 0 6 0 10 34 0 4 43 1 15 337 1 0 233 0 1 4 2 1 236 1 0 495 4 0 821 0 1 717 1 0 456 chain 4743 chr9 141213431 + 22196890 22196942 L1PA13 3608 - 3221 3273 197991 52 chain 3683 chr9 141213431 + 22214234 22214280 MLT1I 406 - 227 273 212181 46 chain 538610 chr9 141213431 + 22220337 22226474 L1PA4 6152 - 1 6142 3051 2284 0 12 147 0 1 75 1 0 467 1 0 2134 0 1 21 1 0 433 1 0 116 6 0 450 chain 267109 chr9 141213431 + 22230668 22234924 L1PA11 4918 + 801 4567 15335 51 0 13 57 431 11 496 0 1 40 11 9 7 0 2 322 0 1 87 2 3 113 1 4 4 1 0 179 0 1 90 5 10 148 0 1 58 0 12 16 14 0 5 1 0 242 11 8 23 79 7 309 0 1 38 4 6 142 0 2 12 1 0 32 1 0 119 0 3 50 1 0 257 6 6 212 17 8 166 0 5 65 1 3 66 1 0 7 7 2 60 2 1 13 2 0 66 3 1 15 1 0 19 4 0 9 8 3 15 18 19 13 chain 5902 chr9 141213431 + 22259312 22259385 MSTA 426 + 318 392 186165 51 0 1 22 chain 4350 chr9 141213431 + 22303003 22303052 U5 65 - 16 65 202581 49 chain 15718 chr9 141213431 + 22322596 22322769 L1PA4 6152 - 290 463 139214 173 chain 24641 chr9 141213431 + 22322803 22323091 L1PA4 6152 + 5862 6152 106774 282 0 2 6 chain 33883 chr9 141213431 + 22328497 22328899 L1PA6 6164 - 2 405 77801 145 2 1 5 0 1 37 0 1 213 chain 125998 chr9 141213431 + 22329411 22330950 L1PA7 6471 - 4 1541 29100 8 5 0 82 8 0 8 1 9 306 0 1 351 0 2 87 0 3 100 3 0 580 chain 67733 chr9 141213431 + 22339311 22340075 L1PA4 6152 + 5370 6151 49355 597 0 17 40 2 0 6 0 2 119 chain 555707 chr9 141213431 + 22348828 22354858 L1PA2 6032 - 4 6028 749 349 6 0 5675 chain 3749 chr9 141213431 + 22362887 22362929 LTR12C 1709 - 991 1033 211167 42 chain 11978 chr9 141213431 + 22363014 22363381 LTR12C 1709 - 514 778 152295 36 44 50 17 15 0 7 2 17 95 0 10 13 120 1 18 chain 21756 chr9 141213431 + 22372941 22373324 L1PB1 5432 + 4919 5279 121186 12 14 15 156 1 0 14 13 0 22 1 0 6 1 0 12 2 0 3 2 0 9 7 5 47 2 1 9 7 6 43 chain 91422 chr9 141213431 + 22433696 22434971 LTR12D 1347 + 0 1347 39160 193 70 88 15 0 36 204 0 31 18 6 5 104 0 17 311 27 0 27 4 3 29 2 1 265 chain 411885 chr9 141213431 + 22435051 22439949 HERV9-int 5642 + 0 4824 9748 410 0 12 47 0 1 187 1 2 133 1 0 112 85 0 202 3 0 144 5 6 857 2 1 2387 0 1 322 chain 54480 chr9 141213431 + 22440855 22441639 LTR12D 1347 + 0 923 56044 203 82 80 13 0 36 180 8 79 61 2 18 18 0 18 217 chain 19782 chr9 141213431 + 22441639 22441863 LTR12D 1347 + 1123 1347 127868 224 chain 3653 chr9 141213431 + 22482309 22482349 L1PA4 6152 - 255 295 212731 40 chain 22516 chr9 141213431 + 22482349 22482600 L1PA4 6152 + 5901 6152 117963 251 chain 9340 chr9 141213431 + 22484716 22484845 MER50 708 - 22 149 163851 45 10 8 74 chain 18845 chr9 141213431 + 22484845 22485056 L1P1 4361 - 57 267 130527 154 1 0 56 chain 67114 chr9 141213431 + 22487784 22488520 L1PA3long 6157 - 0 736 49611 736 chain 491969 chr9 141213431 + 22490134 22496575 L1PA7 6471 - 9 6139 7272 24 0 3 304 2 1 513 0 3 44 5 1 266 1 0 90 2 3 5 1 0 255 0 1 726 1 0 152 1 2 51 311 0 377 0 1 27 12 1 967 3 5 268 1 5 37 10 10 291 2 0 191 2 0 86 0 1 125 5 6 219 1 4 990 3 5 70 chain 532528 chr9 141213431 + 22502883 22509011 L1PA4 6152 - 9 6149 3904 2689 7 21 219 1 0 663 0 1 77 1 2 508 4 0 110 0 1 409 0 1 198 0 1 408 19 15 83 1 0 4 1 2 263 1 2 20 0 1 442 chain 24632 chr9 141213431 + 22531566 22531845 L1PA5 6144 - 0 279 106816 149 0 1 123 1 0 6 chain 107675 chr9 141213431 + 22533846 22535256 L1PA8 5853 + 4446 5847 34809 564 2 0 87 8 7 235 1 2 223 2 1 43 2 0 62 23 21 51 1 0 18 2 1 86 chain 326824 chr9 141213431 + 22565936 22569615 L1PA3long 6157 - 0 3631 12311 112 0 1 163 48 0 3191 1 0 164 chain 118354 chr9 141213431 + 22569615 22570984 L1HS 6032 + 1020 2389 31531 1369 chain 18715 chr9 141213431 + 22571803 22572145 THE1B 368 + 0 368 130915 44 8 23 84 65 0 9 7 83 125 chain 118525 chr9 141213431 + 22572171 22573729 THE1B-int 1605 + 28 1605 31608 380 5 6 4 1 0 11 12 38 226 27 19 593 0 1 299 chain 29077 chr9 141213431 + 22597436 22597741 AluYa5 310 - 5 310 88654 305 chain 18806 chr9 141213431 + 22631166 22631382 L1PA8 5853 - 1950 2166 130657 216 chain 142085 chr9 141213431 + 22631403 22633331 L1PA8 5853 + 3917 5853 25805 74 0 2 121 0 1 321 0 12 316 4 1 10 11 13 94 3 1 74 0 1 46 7 5 144 2 3 144 4 1 64 0 1 198 1 0 18 0 4 19 5 3 59 12 12 12 1 0 49 2 1 19 14 13 80 chain 26973 chr9 141213431 + 22658525 22658925 LTR7 482 - 0 482 96361 51 0 1 63 1 2 41 0 10 18 4 5 11 1 0 16 8 40 109 8 46 69 chain 277658 chr9 141213431 + 22660271 22663656 HERVH-int 3825 - 0 3825 14766 95 0 10 385 0 10 5 0 200 39 9 11 770 0 12 8 15 4 196 3 0 5 0 1 63 1 5 26 0 1 254 0 46 899 0 1 14 0 2 7 0 1 45 21 0 13 7 6 19 4 191 148 1 0 333 chain 10457 chr9 141213431 + 22681817 22681946 MER85 139 - 0 139 158455 40 0 10 89 chain 63688 chr9 141213431 + 22687605 22688424 LTR12 884 + 0 884 51145 25 1 0 30 0 41 210 1 6 7 0 25 34 2 0 299 1 0 91 6 4 112 chain 277686 chr9 141213431 + 22700592 22703676 L1PA3long 6157 - 5 3093 14764 844 5 6 1851 1 4 383 chain 88788 chr9 141213431 + 22726133 22727131 L1PA4 6152 - 265 1265 40086 68 0 1 498 1 0 19 0 1 122 0 1 290 chain 106278 chr9 141213431 + 22727135 22728337 L1P1 4361 + 1184 2386 35187 1202 chain 429299 chr9 141213431 + 22734789 22739598 L1PA3long 6157 - 0 4815 9328 673 2 0 951 1 0 435 0 2 226 1 0 226 0 5 236 0 17 215 9 1 418 1 0 195 0 1 868 2 0 112 0 3 122 0 1 38 8 0 70 chain 68211 chr9 141213431 + 22743086 22743933 L1PA7 6471 + 5621 6461 49156 81 1 0 114 0 1 198 23 15 103 1 2 326 chain 164112 chr9 141213431 + 22758946 22760809 L1PA5 6144 - 1425 3286 22794 165 4 0 747 0 2 947 chain 128413 chr9 141213431 + 22760809 22762228 L1PA5 6144 + 4716 6140 28454 1410 0 5 9 chain 49760 chr9 141213431 + 22764462 22765028 L1PA4 6152 + 5581 6144 59187 86 3 0 231 1 0 48 0 1 197 chain 165891 chr9 141213431 + 22785584 22787815 L1PA7 6471 - 1851 4065 22528 63 1 0 426 4 37 46 3 2 196 15 14 44 20 0 58 20 1 23 0 1 105 0 2 5 2 0 23 1 5 14 10 6 51 0 1 604 0 4 118 11 0 122 6 7 7 9 0 25 0 4 65 15 16 119 chain 134725 chr9 141213431 + 22787827 22789502 L1PA7 6471 + 4771 6463 27072 52 0 9 787 1 4 371 4 0 9 0 1 65 0 8 220 25 25 141 chain 15448 chr9 141213431 + 22823028 22823201 HERV17-int 4347 + 4173 4346 140057 173 chain 26842 chr9 141213431 + 22823513 22823838 LTR17 781 + 0 325 96834 325 chain 250432 chr9 141213431 + 22830959 22834615 HERVL-int 5654 + 0 3329 16218 101 1 2 6 1 0 180 5 6 70 6 7 14 1 3 197 0 1 60 0 1 5 1 0 320 5 4 267 0 1 4 5 4 35 0 1 184 1 0 244 350 0 221 1 0 4 0 1 182 0 1 251 4 5 121 0 1 147 0 1 4 1 0 61 0 4 6 1 10 41 9 8 59 17 18 55 0 1 53 5 6 91 0 1 259 chain 3402 chr9 141213431 + 22848855 22848891 LTR35B 538 + 92 128 217050 36 chain 62491 chr9 141213431 + 22877719 22878472 LTR17 781 - 7 781 51682 24 0 22 401 1 0 327 chain 43353 chr9 141213431 + 22880161 22880763 LTR66 600 + 0 579 64987 48 0 4 223 0 1 39 13 14 76 1 7 62 34 0 14 2 1 90 chain 105367 chr9 141213431 + 22884579 22885788 L1PA5 6144 - 1506 2715 35404 9 1 0 43 1 2 1155 chain 130050 chr9 141213431 + 22885790 22887272 L1PA5 6144 + 4647 6137 28080 73 0 7 325 0 1 932 12 12 140 chain 42844 chr9 141213431 + 22933029 22933553 MER41A 554 - 0 527 65602 223 0 1 112 6 8 183 chain 26521 chr9 141213431 + 22941209 22941564 THE1A 353 - 0 353 97967 155 1 0 73 17 16 109 chain 123794 chr9 141213431 + 22941569 22943133 THE1A-int 1579 - 5 1571 29772 228 2 0 254 8 4 613 0 4 6 0 1 223 8 11 54 0 1 57 11 10 100 chain 68249 chr9 141213431 + 22950717 22951478 L1PA3long 6157 - 0 762 49140 147 0 1 614 chain 65047 chr9 141213431 + 22951478 22952231 L1PA3long 6157 + 4677 5398 50551 602 32 0 119 chain 36576 chr9 141213431 + 22958576 22959104 L1PA15 4387 - 540 1069 74129 11 7 3 14 0 2 331 27 28 15 1 3 122 chain 89322 chr9 141213431 + 22962172 22963180 L1PA5 6144 + 5112 6120 39876 258 0 1 263 1 0 486 chain 100139 chr9 141213431 + 23014313 23015423 L1PA4 6152 + 5026 6152 36733 148 0 16 962 chain 10870 chr9 141213431 + 23017287 23017495 L1MA3 4352 + 4019 4209 156695 67 58 40 83 chain 58183 chr9 141213431 + 23024879 23025736 L1PA11 4918 - 352 1197 53883 12 1 0 15 44 32 19 1 0 14 2 0 67 2 0 12 1 0 63 20 11 58 3 17 32 0 1 104 17 18 370 chain 23669 chr9 141213431 + 23047813 23048093 L1PA8A 6298 + 5606 5887 112208 235 0 1 45 chain 56807 chr9 141213431 + 23068105 23068852 L1PA8 5853 + 5113 5853 54649 9 0 1 66 0 3 269 4 0 101 1 0 47 2 0 70 1 0 14 7 6 41 2 1 19 1 0 93 chain 192738 chr9 141213431 + 23084714 23087078 L1PA7 6471 + 4078 6460 19794 49 7 8 146 0 2 672 1 0 634 10 14 27 0 1 7 7 8 63 6 8 236 0 7 363 0 1 136 chain 533420 chr9 141213431 + 23105113 23111238 L1PA4 6152 + 2 6152 3789 125 0 14 187 0 3 395 1 2 530 2 0 56 18 21 309 0 1 301 1 0 56 0 1 381 0 4 2900 0 1 19 0 1 438 0 3 5 3 0 143 1 0 254 chain 18027 chr9 141213431 + 23118758 23119059 THE1D 372 - 0 307 132785 161 69 76 33 1 0 37 chain 52866 chr9 141213431 + 23130997 23131589 L1PA3long 6157 + 5565 6157 57092 227 1 0 252 0 1 112 chain 12104 chr9 141213431 + 23148524 23148705 L1MA1 4479 - 346 524 151779 26 3 1 28 1 0 27 3 4 47 1 0 45 chain 3532 chr9 141213431 + 23149942 23149986 L1MA1 4479 - 2310 2354 214838 44 chain 111867 chr9 141213431 + 23222941 23224342 L1PA7 6471 - 7 1415 33700 5 3 0 143 11 10 447 0 3 154 0 2 79 2 1 17 0 4 114 2 5 424 chain 90489 chr9 141213431 + 23224666 23226121 L1P1 4361 + 2891 4038 39474 276 0 1 9 1 0 198 0 1 58 324 0 69 2 0 83 0 16 309 5 6 121 chain 29921 chr9 141213431 + 23225221 23225532 AluYb8 318 - 7 318 85037 311 chain 4286 chr9 141213431 + 23233561 23233624 MER50B 698 - 353 415 203402 46 4 3 13 chain 441650 chr9 141213431 + 23247436 23253029 L1PA7 6471 + 0 6468 9007 23 0 4 384 0 1 37 7 8 49 9 10 5 1 0 95 1 0 4 8 6 22 2 1 1395 0 967 440 1 6 92 8 12 16 0 1 664 0 2 619 0 1 86 2 0 639 10 11 14 1 0 98 1 0 432 85 0 215 27 6 75 5 7 21 chain 22749 chr9 141213431 + 23256965 23257221 L1PA3long 6157 + 5901 6157 116834 256 chain 112295 chr9 141213431 + 23271172 23272594 L1P2 5180 - 2130 3565 33592 121 0 4 6 7 3 307 7 10 279 0 1 59 6 11 54 0 4 576 chain 47593 chr9 141213431 + 23317395 23317963 L1PA7 6471 - 47 625 60770 397 2 5 53 7 14 109 chain 29491 chr9 141213431 + 23328692 23329016 AluYb8 318 + 0 318 86665 126 6 0 192 chain 82728 chr9 141213431 + 23336535 23337452 L1PA3long 6157 + 5240 6157 42448 917 chain 261671 chr9 141213431 + 23353982 23357543 L1PBa 3878 - 194 3794 15607 206 1 2 177 9 10 67 3 0 166 0 2 213 13 23 28 0 2 77 0 4 32 0 1 296 0 13 26 34 38 411 0 1 273 7 5 9 1 0 130 0 1 134 7 8 316 0 3 26 3 16 109 0 4 27 0 2 49 27 22 229 1 0 282 1 0 7 2 0 24 1 0 47 13 9 12 1 0 45 1 0 10 2 0 6 chain 7372 chr9 141213431 + 23366459 23366604 L1PREC2 3366 - 1202 1297 174968 67 50 0 28 chain 16533 chr9 141213431 + 23385177 23385400 L1MA2 4263 + 3808 4029 136828 150 1 0 8 1 0 63 chain 76344 chr9 141213431 + 23388726 23389731 MER11C 1089 - 26 1038 45293 147 1 0 50 0 1 68 8 1 58 0 1 38 1 0 7 0 4 109 48 47 147 2 1 44 1 0 23 0 4 58 0 9 195 chain 48762 chr9 141213431 + 23395203 23395782 L1PA4 6152 - 4549 5128 59840 579 chain 403648 chr9 141213431 + 23395782 23400345 L1PA4 6152 + 1577 6151 9980 743 1 0 850 0 1 249 1 0 262 0 1 248 2 5 248 1 4 166 0 4 548 0 1 1244 chain 9143 chr9 141213431 + 23415202 23415312 Tigger3c 601 + 418 528 164848 110 chain 3085 chr9 141213431 + 23452686 23452721 LTR12C 1709 + 683 718 223188 35 chain 19478 chr9 141213431 + 23478326 23478573 AluSp 311 - 13 247 128717 12 13 0 222 chain 24081 chr9 141213431 + 23507110 23507432 THE1A 353 + 0 353 109865 103 8 7 91 2 34 118 chain 117116 chr9 141213431 + 23507432 23508985 THE1A-int 1579 + 0 1574 32084 12 2 4 134 3 0 19 24 24 66 0 1 6 0 2 225 1 2 81 15 31 261 13 13 247 0 1 331 0 1 113 chain 28755 chr9 141213431 + 23508990 23509344 THE1A 353 + 0 353 90089 110 1 0 243 chain 150267 chr9 141213431 + 23519072 23520844 L1PA6 6164 + 4402 6162 24572 36 5 0 944 0 1 292 10 5 57 0 2 252 1 0 5 0 1 159 5 0 6 chain 51144 chr9 141213431 + 23547450 23548027 L1PA4 6152 - 802 1379 58170 577 chain 70482 chr9 141213431 + 23548027 23548817 L1PA4 6152 + 5351 6141 48173 790 chain 4190 chr9 141213431 + 23559060 23559112 MER5A 189 - 137 189 204693 52 chain 9697 chr9 141213431 + 23562850 23562981 MER85 139 - 0 137 162098 30 0 10 41 4 0 56 chain 93594 chr9 141213431 + 23626325 23627438 L1PA7 6471 + 5335 6454 38476 234 1 2 43 0 3 584 0 1 107 1 2 143 chain 12740 chr9 141213431 + 23670590 23670936 MER107 203 + 0 203 149291 20 1 0 88 138 12 38 20 10 8 6 0 27 chain 4121 chr9 141213431 + 23677466 23677513 MSTD 398 + 351 398 205636 47 chain 20989 chr9 141213431 + 23716075 23716311 L1PA5 6144 + 5896 6132 123958 236 chain 40314 chr9 141213431 + 23723119 23723568 L1PA3long 6157 + 5697 6153 68862 304 0 7 145 chain 4945 chr9 141213431 + 23754818 23755091 MER34A 573 + 98 392 195753 46 199 220 28 chain 4041 chr9 141213431 + 23759008 23759062 L1MA6 2487 + 2124 2178 206772 42 0 1 4 1 0 7 chain 521372 chr9 141213431 + 23860626 23867053 L1PA7 6471 - 17 6469 5020 323 1 0 344 5 6 107 0 3 54 0 3 622 1 2 788 0 1 141 0 1 361 2 1 85 2 0 33 0 3 73 4 0 265 0 1 696 3 6 367 1 0 4 0 1 393 1 2 368 0 3 133 6 0 8 16 26 327 1 2 336 6 6 91 27 29 149 15 15 63 2 7 203 chain 92436 chr9 141213431 + 23876318 23877850 L1PB2 3958 - 124 1739 38833 59 1 0 22 2 0 71 2 1 63 2 1 42 0 12 4 12 0 14 1 0 93 4 0 14 2 0 14 6 5 11 84 91 10 2 0 10 5 16 20 0 4 35 0 1 10 4 8 73 3 8 170 0 5 9 19 0 14 1 0 138 8 7 193 7 96 197 27 20 54 chain 115978 chr9 141213431 + 23881981 23883565 THE1B-int 1605 - 0 1605 32468 25 5 3 33 11 12 183 0 2 46 8 5 275 3 5 342 1 0 213 0 64 118 0 6 161 49 0 94 4 5 13 chain 3007 chr9 141213431 + 23883415 23883448 THE1B-int 1605 - 1449 1482 224917 33 chain 3649 chr9 141213431 + 23892117 23892160 L1MA4 2864 - 55 98 212802 43 chain 148406 chr9 141213431 + 23893900 23895596 L1PA4 6152 - 9 1709 24825 104 0 1 14 0 1 721 0 1 96 0 1 761 chain 5691 chr9 141213431 + 23907260 23907337 L1PA8 5853 - 0 85 188191 38 3 11 36 chain 59641 chr9 141213431 + 23908414 23909097 L1PA5 6144 - 1418 2107 52924 90 0 5 358 0 1 235 chain 127040 chr9 141213431 + 23909097 23910518 L1PA5 6144 + 4699 6125 28806 598 0 4 733 0 1 90 chain 3097 chr9 141213431 + 23911747 23911789 MER21B 843 + 53 93 222987 31 2 0 9 chain 105728 chr9 141213431 + 23913478 23914975 LTR12C 1709 - 0 1709 35323 84 14 13 49 101 0 335 20 13 97 3 1 5 1 0 127 0 278 233 10 12 63 18 61 68 3 4 266 chain 4268 chr9 141213431 + 23913664 23913716 LTR12C 1709 - 54 107 203648 48 0 1 4 chain 47338 chr9 141213431 + 23916278 23917007 LTR12 884 - 0 884 60942 129 4 39 275 0 1 43 7 10 9 2 0 49 11 77 19 17 110 20 38 0 37 3 1 30 1 0 35 chain 460741 chr9 141213431 + 23919633 23925376 HERV9-int 5642 - 0 5629 8372 17 2 0 3 4 0 19 28 5 12 2 1 87 3 1 36 6 4 226 1 0 893 0 1 1086 5 3 867 1 5 200 3 4 508 1 0 7 0 1 472 2 0 77 3 0 43 79 0 18 3 0 10 9 12 129 2 1 90 21 20 181 7 6 429 0 4 151 chain 59468 chr9 141213431 + 23925440 23926428 LTR12D 1347 - 13 940 53132 77 0 1 28 4 39 85 0 1 5 1 0 16 1 0 24 10 9 27 19 15 119 0 7 171 24 17 103 6 5 17 122 33 95 1 0 33 chain 7869 chr9 141213431 + 23926179 23926272 LTR12D 1347 - 812 905 171877 93 chain 7890 chr9 141213431 + 23928519 23928616 L1MA3 4352 + 3855 3952 171724 97 chain 125854 chr9 141213431 + 23935979 23937365 L1P1 4361 - 221 1607 29140 1386 chain 38692 chr9 141213431 + 23937779 23938217 L1PA2 6032 + 5587 6032 71159 279 5 0 7 0 5 134 0 7 13 chain 19158 chr9 141213431 + 23959363 23959698 THE1B 368 + 8 368 129653 36 0 15 113 2 1 25 43 53 25 18 19 73 chain 315298 chr9 141213431 + 23963024 23967108 L1P3 4156 - 17 4156 12794 24 2 1 7 2 0 255 0 1 25 2 1 273 1 5 63 0 1 499 0 1 83 6 8 257 1 2 91 7 9 15 0 2 354 0 5 51 2 0 5 4 6 411 16 29 180 8 21 38 0 1 124 5 6 132 18 19 19 0 1 194 0 8 154 0 1 54 5 7 291 1 0 4 1 3 78 1 0 68 2 1 251 chain 10692 chr9 141213431 + 23971416 23971551 AluSg7 307 + 36 172 157443 95 1 2 39 chain 5169 chr9 141213431 + 23977072 23977130 L1PA2 6032 + 5974 6032 193353 58 chain 201275 chr9 141213431 + 23988726 23991698 L1MA1 4479 + 231 3230 19117 48 2 0 25 0 1 4 9 8 39 1 0 31 2 1 119 11 9 68 0 2 27 0 25 30 0 1 27 69 74 43 1 6 72 0 2 408 13 4 4 0 1 73 1 3 127 0 1 329 6 7 172 10 5 62 2 0 77 7 4 53 1 0 183 0 2 7 0 1 134 8 9 26 41 33 43 8 7 103 2 0 33 1 0 154 12 31 169 2 0 68 1 0 4 chain 514391 chr9 141213431 + 23991700 23997832 L1PA6 6164 + 1 6158 5736 138 1 2 80 0 1 340 2 0 410 0 1 60 0 2 650 0 1 647 0 1 848 1 3 4 0 1 507 1 2 668 0 4 136 0 4 102 2 1 190 9 1 114 0 5 393 0 6 389 1 6 244 5 15 62 9 0 119 chain 23222 chr9 141213431 + 24000104 24000385 AluSp 311 - 19 300 114586 281 chain 163843 chr9 141213431 + 24017077 24019032 L1PA6 6164 - 2 1969 22830 205 9 18 285 1 0 338 0 4 1117 chain 56832 chr9 141213431 + 24050457 24051119 L1PA5 6144 - 8 670 54639 174 8 8 480 chain 137928 chr9 141213431 + 24053662 24055368 L1PA7 6471 + 4757 6465 26492 408 7 9 175 0 1 197 0 1 73 1 0 398 0 3 61 6 7 364 5 0 11 chain 153915 chr9 141213431 + 24067356 24069083 L1PA3long 6157 + 4433 6157 24100 800 1 0 591 2 1 183 2 3 141 2 0 5 chain 111672 chr9 141213431 + 24080232 24081799 THE1A-int 1579 + 0 1579 33755 97 1 0 131 3 6 310 19 21 71 20 34 7 5 0 284 5 6 161 23 22 154 12 11 213 4 5 28 1 0 18 chain 36708 chr9 141213431 + 24085313 24086030 L1PREC2 3366 - 318 989 73948 37 26 24 16 28 14 5 1 0 18 9 0 7 72 62 11 3 0 4 1 0 43 2 1 54 23 21 20 1 0 233 3 1 100 chain 10026 chr9 141213431 + 24089479 24089926 MLT1C 463 + 59 463 160446 46 1 2 17 292 248 91 chain 122090 chr9 141213431 + 24093587 24094922 L1PA2 6032 - 178 1513 30352 1335 chain 15932 chr9 141213431 + 24094922 24095091 L1PA2 6032 + 5860 6029 138573 169 chain 254281 chr9 141213431 + 24106056 24108877 L1PA3long 6157 - 8 2832 16016 841 2 1 1024 0 4 954 chain 7734 chr9 141213431 + 24114983 24115073 L1PA8 5853 - 0 90 172685 90 chain 71360 chr9 141213431 + 24121838 24122643 L1PA4 6152 + 5345 6151 47766 31 4 5 770 chain 115667 chr9 141213431 + 24134902 24136313 LTR12C 1709 + 0 1709 32569 266 0 1 20 5 22 114 1 2 48 8 9 168 0 278 184 1 0 4 4 2 106 0 4 394 6 5 82 chain 77413 chr9 141213431 + 24173406 24174309 L1P1 4361 - 33 934 44770 23 1 0 155 13 12 711 chain 46614 chr9 141213431 + 24174316 24174843 L1PA3long 6157 + 5628 6156 61524 239 0 1 288 chain 127783 chr9 141213431 + 24177707 24181506 L1PA13 3608 - 120 2002 28621 20 1 0 20 2 0 5 2 0 36 0 5 6 2 0 5 3 0 21 0 1 30 4 3 63 2 0 113 1 0 32 8 7 59 0 3 130 21 21 42 25 26 423 15 13 85 1 0 287 5 8 115 10 6 163 6 1 24 1907 4 105 chain 102965 chr9 141213431 + 24186797 24187976 L1PA5 6144 + 4953 6139 36000 341 1 0 699 1 9 137 chain 20537 chr9 141213431 + 24199093 24199379 L1MA3 4352 - 1062 1337 125520 175 0 1 55 20 8 36 chain 74152 chr9 141213431 + 24213683 24214505 L1PA4 6152 - 596 1419 46429 98 0 1 156 1 0 34 0 1 533 chain 49234 chr9 141213431 + 24214523 24215089 L1PA4 6152 + 5581 6152 59566 236 0 1 80 1 0 243 0 5 6 chain 535775 chr9 141213431 + 24224674 24230668 L1PA3long 6157 - 7 6153 3482 73 0 20 47 1 0 2740 0 4 1343 0 1 1018 0 128 293 5 0 152 0 3 174 0 1 57 0 1 91 chain 90978 chr9 141213431 + 24238871 24239945 MER11C 1089 - 15 1089 39301 9 1 2 155 0 1 339 6 5 148 0 1 31 3 1 382 chain 27289 chr9 141213431 + 24263167 24263459 AluYf4 310 - 4 296 95309 292 chain 4162 chr9 141213431 + 24266302 24266351 L1PA3long 6157 - 8 56 205077 6 1 0 42 chain 27123 chr9 141213431 + 24266351 24266668 L1PA3long 6157 + 5766 6084 95861 248 0 1 69 chain 47056 chr9 141213431 + 24279635 24280170 L1PA5 6144 - 3312 3850 61018 75 0 1 449 1 3 10 chain 287998 chr9 141213431 + 24280170 24283492 L1PA5 6144 + 2803 6138 14157 354 2 1 100 0 1 36 0 1 518 0 5 756 0 1 52 0 5 658 1 5 147 8 3 540 4 5 12 0 1 134 chain 65528 chr9 141213431 + 24337446 24338169 L1PA3long 6157 - 0 749 50287 14 0 23 222 0 3 487 chain 110850 chr9 141213431 + 24338169 24339389 L1PA3long 6157 + 4167 5388 33984 1070 0 1 150 chain 41807 chr9 141213431 + 24339389 24339947 L1PB1 5432 - 333 920 66493 83 17 32 178 2 10 75 0 3 19 5 6 62 0 2 117 chain 12189 chr9 141213431 + 24339947 24340139 L1PBa1 4058 - 2731 2931 151200 54 24 24 31 6 14 77 chain 74848 chr9 141213431 + 24347211 24348091 L1PA7 6471 + 5579 6464 46091 38 1 3 97 2 5 742 chain 24463 chr9 141213431 + 24356125 24356433 THE1B-int 1605 - 0 310 107745 111 0 2 172 2 1 4 0 1 19 chain 29126 chr9 141213431 + 24356433 24356737 AluYa5 310 - 6 310 88431 304 chain 382389 chr9 141213431 + 24387078 24391936 L1PA7 6471 - 1603 6469 10682 281 1 7 299 4 0 31 1 0 37 0 2 130 4 5 45 0 1 187 11 12 264 20 23 257 11 4 637 11 8 138 0 5 257 0 1 58 0 1 426 1 0 220 0 1 245 3 1 5 4 0 562 1 9 83 12 11 211 0 1 149 28 28 224 chain 126647 chr9 141213431 + 24391937 24393885 L1PA7 6471 + 4862 6470 28904 415 0 1 19 0 1 82 9 19 218 7 11 46 356 0 123 0 1 44 4 3 625 chain 385965 chr9 141213431 + 24408486 24413197 L1PA5 6144 + 0 6135 10575 120 0 14 87 1 0 357 0 1 229 1 23 188 10 11 4 1 0 135 9 0 954 0 3 436 0 4 183 10 9 547 6 0 133 2 0 33 0 3 28 0 1 439 0 1 217 0 1 50 0 1399 61 0 1 318 7 0 145 chain 28128 chr9 141213431 + 24425476 24425776 AluYg6 310 - 9 309 92546 300 chain 8660 chr9 141213431 + 24501178 24501270 L1PA3long 6157 - 0 92 167431 92 chain 214790 chr9 141213431 + 24523013 24525497 L1P1 4361 - 169 2684 18179 15 0 1 26 1 0 889 0 2 38 8 29 15 2 0 247 0 1 227 9 12 545 0 6 462 chain 12013 chr9 141213431 + 24525497 24525652 L1P1 4361 + 4188 4341 151830 117 1 0 23 2 1 12 chain 3160 chr9 141213431 + 24528835 24528873 MER3 215 - 0 38 221739 38 chain 91957 chr9 141213431 + 24534880 24536137 L1PB1 5432 - 613 1893 38982 114 0 2 73 5 0 8 7 8 407 0 2 30 0 24 167 3 0 82 0 1 36 0 4 119 2 1 15 3 0 138 1 2 47 chain 34536 chr9 141213431 + 24536138 24536784 L1PB1 5432 + 4819 5430 76853 190 1 0 68 0 6 20 1 2 9 12 11 9 1 0 12 1 0 12 20 14 40 1 0 8 2 1 15 1 0 44 1 0 16 24 12 19 2 0 5 10 9 5 2 0 19 6 5 21 1 0 13 1 0 10 1 0 10 7 0 6 chain 28207 chr9 141213431 + 24537406 24537700 AluYa5 310 - 16 310 92281 294 chain 1943 chr9 141213431 + 24574145 24574508 L1PA5 6144 - 6 369 75900 363 chain 553475 chr9 141213431 + 24574534 24580562 L1PA2 6032 - 0 6030 1005 1753 0 1 2597 0 1 1678 chain 862 chr9 141213431 + 24580562 24580723 L1PA5 6144 - 369 530 75900 161 chain 4124 chr9 141213431 + 24588126 24588177 Tigger3c 601 + 23 74 205608 51 chain 518362 chr9 141213431 + 24638748 24644897 L1PA4 6152 - 11 6152 5341 840 1 0 221 0 13 20 1 0 4 1 2 524 0 1 4 1 0 132 3 1 695 1 3 269 6 0 693 4 23 388 44 12 527 8 7 275 9 8 44 0 1 1434 chain 6349 chr9 141213431 + 24650094 24650238 MER44A 345 - 104 262 182390 63 50 64 31 chain 60611 chr9 141213431 + 24655582 24656261 L1PA4 6152 + 5467 6152 52515 110 0 1 563 0 5 6 chain 518901 chr9 141213431 + 24662834 24669014 L1PA4 6152 - 1 6152 5276 171 3 6 665 0 1 7 1 0 1405 6 5 714 1 0 14 0 2 122 0 1 1582 0 3 402 39 0 127 0 1 334 3 0 5 0 3 414 11 25 14 15 3 125 chain 28550 chr9 141213431 + 24676497 24676843 L1PA7 6471 + 6120 6469 90961 188 1 2 146 0 2 11 chain 47971 chr9 141213431 + 24704994 24705534 L1P1 4361 - 1904 2444 60506 540 chain 13894 chr9 141213431 + 24717489 24717817 L1PB1 5432 - 18 318 144938 10 1 0 12 1 0 22 6 6 18 2 0 14 1 0 5 3 1 18 16 6 6 1 0 12 10 9 38 19 17 43 0 1 7 2 0 10 2 0 3 2 0 10 1 0 8 1 0 24 chain 57938 chr9 141213431 + 24728752 24729474 MER4E 760 + 0 752 54010 170 7 0 167 1 41 68 1 0 55 1 0 232 1 0 19 chain 3367 chr9 141213431 + 24742043 24742083 LTR37B 484 - 4 44 217729 40 chain 22389 chr9 141213431 + 24744199 24744958 L1PA8 5853 + 5501 5847 118543 63 1 0 44 407 0 73 1 0 6 25 22 31 2 1 19 1 0 48 0 1 38 chain 7427 chr9 141213431 + 24744618 24744712 L1PA8 5853 + 5515 5608 174596 49 1 0 44 chain 280485 chr9 141213431 + 24750422 24753556 L1PA4 6152 - 1 3138 14618 766 4 7 4 1 0 2191 0 1 168 chain 29276 chr9 141213431 + 24753650 24753958 AluYa5 310 - 2 310 87665 308 chain 4617 chr9 141213431 + 24758910 24758975 MADE1 96 - 4 85 199432 45 1 17 19 chain 481630 chr9 141213431 + 24759100 24765863 L1PA7 6471 - 16 6471 7668 175 3 0 4 0 1 74 0 17 376 0 3 182 7 0 21 9 13 96 14 19 90 1 0 435 1 0 23 2 1 249 0 4 153 0 1 508 18 18 22 14 15 109 10 11 274 6 7 24 3 1 25 0 1 6 15 13 384 31 17 158 0 1 142 8 1 108 0 1 37 5 7 25 0 1 35 0 2 41 0 4 190 8 9 149 316 0 11 1 2 895 1 7 7 6 0 300 13 14 154 2 1 374 5 0 209 3 2 196 chain 301675 chr9 141213431 + 24789047 24793226 L1PA7 6471 + 2577 6466 13334 7 2 0 57 9 1 408 4 0 318 1 0 61 0 3 7 13 10 35 1 2 51 7 11 30 0 5 653 1 0 181 0 2 103 3 5 130 0 2 159 0 4 123 9 4 28 0 2 5 10 8 311 313 0 266 0 1 40 4 10 757 6 23 66 chain 28717 chr9 141213431 + 24791781 24792087 AluYb8 318 + 1 307 90264 306 chain 21172 chr9 141213431 + 24819602 24819961 THE1D 372 + 0 357 123300 143 78 78 4 1 0 115 1 0 17 chain 6390 chr9 141213431 + 24825280 24825357 L1PA6 6164 + 6082 6159 182098 77 chain 141258 chr9 141213431 + 24856852 24858495 L1PA5 6144 - 12 1758 25943 845 1 0 214 5 106 136 6 9 436 chain 247629 chr9 141213431 + 24858496 24861376 L1P1 4361 + 682 3573 16371 45 2 3 425 0 3 98 0 1 188 0 4 378 1 2 623 0 1 1120 chain 6313 chr9 141213431 + 24861943 24862016 L1PA5 6144 + 5972 6045 182687 73 chain 74978 chr9 141213431 + 24869342 24870156 L1PA2 6032 - 0 813 46023 782 1 0 31 chain 486482 chr9 141213431 + 24888462 24895141 L1PA7 6471 + 15 6459 7502 226 0 1 168 61 32 77 7 8 50 13 10 665 26 45 512 0 1 292 0 2 151 0 4 277 1 2 41 6 8 52 7 8 17 0 1 224 0 4 516 1 5 6 4 0 124 0 4 22 0 4 6 0 4 150 1 19 83 3 0 172 0 1 197 2 1 28 5 12 32 0 3 86 0 1 89 0 8 57 0 4 140 1 5 63 1 2 356 0 1 461 0 4 43 0 4 8 1 4 55 5 7 117 311 1 338 0 1 259 6 5 16 1 2 40 chain 23158 chr9 141213431 + 24894181 24894480 AluY 311 + 0 294 114860 133 17 12 149 chain 28747 chr9 141213431 + 24897848 24898472 LTR1 825 + 178 815 90135 25 2 0 5 22 24 16 4 0 8 161 165 48 1 0 4 1 2 137 2 6 75 3 12 27 1 2 77 1 0 4 chain 8424 chr9 141213431 + 24907982 24908092 MER84 505 + 14 125 168713 73 0 1 37 chain 132481 chr9 141213431 + 24918315 24919776 L1PA3long 6157 - 842 2306 27530 6 0 2 671 0 1 784 chain 74925 chr9 141213431 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475 6 4 74 0 2 341 0 1 325 4 0 90 54 9 154 27 29 98 0 1 363 8 5 149 0 1 202 1 78 84 0 1 35 0 1 757 0 3 133 15 11 89 33 21 118 0 2 84 21 15 58 1 0 76 9 9 13 1 0 67 5 6 7 0 1 17 0 4 34 7 8 368 3 1 103 0 1 95 0 1 71 0 1 78 0 2 34 5 6 95 1 7 10 7 1 119 299 0 206 19 7 193 53 17 9 1 0 11 3 1 18 chain 17973 chr9 141213431 + 25024939 25025166 L1PA8 5853 + 3492 3718 132930 99 6 5 122 chain 516871 chr9 141213431 + 25039980 25046099 L1PA4 6152 - 9 6151 5500 547 14 14 273 4 9 837 0 1 286 0 1 131 1 0 362 2 1 503 0 1 789 0 4 70 0 1 1019 0 1 268 9 5 96 12 5 39 1 2 165 0 19 253 5 6 304 8 9 121 chain 253974 chr9 141213431 + 25058149 25061353 L1PA7 6471 - 4 6056 16031 284 0 1 467 6 5 89 2 0 666 1 0 206 0 1 169 0 1 7 1 0 75 0 4 169 13 21 296 0 2836 80 8 9 75 1 0 4 0 1 143 1 2 7 1 0 215 0 1 218 chain 23645 chr9 141213431 + 25064142 25064501 L1PA13 3608 - 126 474 112337 14 1 0 20 2 0 5 2 0 47 2 0 5 13 12 44 1 0 62 2 0 33 0 1 77 9 8 20 chain 537704 chr9 141213431 + 25070954 25076966 L1PA3long 6157 - 8 6157 3206 139 0 1 190 0 1 457 0 2 44 1 5 1093 3 0 57 0 3 732 1 3 1312 0 3 23 6 0 1107 0 1 72 0 128 621 3 4 151 chain 524378 chr9 141213431 + 25102004 25108183 L1PA5 6144 + 5 6144 4732 219 1 0 249 5 1 251 1 0 1833 0 4 1175 1 0 341 6 12 1205 1 5 431 10 6 235 3 4 95 59 15 58 chain 128582 chr9 141213431 + 25122387 25123992 L1PA7 6471 - 2 1607 28426 8 2 0 151 1 3 661 7 8 17 2 1 232 0 1 42 1 0 481 chain 82735 chr9 141213431 + 25125772 25126811 HERVL-int 5654 - 4606 5653 42445 520 13 18 9 1 0 6 15 15 62 0 2 5 0 1 294 0 1 114 chain 54190 chr9 141213431 + 25131127 25131749 L1PA5 6144 + 5520 6143 56238 225 0 1 397 chain 5581 chr9 141213431 + 25140224 25140335 L1MA5 2750 + 2552 2661 189262 10 1 0 49 5 6 12 10 9 8 1 0 15 chain 22644 chr9 141213431 + 25150226 25150509 L1PA7 6471 + 6184 6470 117360 271 1 4 11 chain 24271 chr9 141213431 + 25152544 25152930 L1PA8 5853 - 0 379 108842 92 2 1 15 8 7 37 25 23 69 3 1 41 4 3 90 chain 229323 chr9 141213431 + 25165469 25168445 L1PA7 6471 - 1 2999 17334 154 3 4 160 4 5 344 0 4 28 3 1 67 2 0 48 0 1 33 1 0 119 0 5 585 0 1 39 1 0 4 7 8 602 1 2 144 0 1 54 0 1 38 4 9 10 6 0 46 0 1 134 0 2 106 0 1 17 0 1 4 0 1 79 5 4 29 0 4 40 3 1 6 0 2 14 4 6 4 0 1 24 chain 119450 chr9 141213431 + 25168457 25169920 L1P3 4156 + 2665 4136 31246 221 0 4 371 0 1 226 1 0 37 0 1 77 0 1 224 2 0 56 2 9 214 2 0 7 2 1 21 chain 71129 chr9 141213431 + 25172429 25173251 L1PA5 6144 - 1 824 47875 137 0 7 15 7 0 126 0 1 537 chain 20893 chr9 141213431 + 25173258 25173492 L1PA5 6144 + 5097 5331 124302 234 chain 34828 chr9 141213431 + 25189611 25190050 L1P1 4361 - 3926 4357 76435 241 9 1 189 chain 9210 chr9 141213431 + 25201811 25201919 THE1B 368 - 260 368 164505 108 chain 171274 chr9 141213431 + 25229005 25231093 L1PA7 6471 - 4 2094 21904 9 3 0 8 0 1 480 0 1 112 0 1 130 16 17 23 0 1 63 1 0 381 9 10 853 chain 19208 chr9 141213431 + 25232499 25232717 L1PA5 6144 - 431 649 129511 218 chain 35390 chr9 141213431 + 25232717 25233119 L1PA5 6144 + 5739 6141 75683 402 chain 66237 chr9 141213431 + 25247470 25248512 LTR12D 1347 + 405 1347 49990 64 5 0 39 37 0 28 1 32 27 0 1 97 97 13 314 33 28 34 1 0 265 chain 1807 chr9 141213431 + 25247584 25247615 LTR12D 1347 + 436 467 140568 31 chain 4546 chr9 141213431 + 25247768 25247846 LTR12D 1347 + 574 652 140568 78 chain 85408 chr9 141213431 + 25256693 25257632 L1PA3long 6157 + 5218 6156 41378 472 1 0 466 chain 30258 chr9 141213431 + 25264858 25265553 MLT2A1 477 + 2 477 84035 136 15 16 14 1 5 37 22 18 156 4 1 10 1 0 6 6 0 8 200 0 10 10 0 39 1 0 19 chain 4282 chr9 141213431 + 25265333 25265386 MLT2A2 560 - 1 53 203456 19 1 0 33 chain 22290 chr9 141213431 + 25280031 25280305 AluY 311 + 38 298 118948 88 14 0 172 chain 22400 chr9 141213431 + 25288173 25288589 LTR7 482 + 2 482 118480 29 44 133 16 51 0 37 3 0 6 9 41 21 3 0 197 chain 273218 chr9 141213431 + 25288591 25291923 HERVH-int 3825 + 0 3822 15006 225 0 468 4 1 0 82 1 0 901 9 36 290 0 4 267 0 1 30 1 2 27 7 9 198 0 1 4 1 0 212 1 0 209 12 0 103 5 6 329 13 14 400 chain 26252 chr9 141213431 + 25293741 25294099 LTR7 482 + 0 482 99010 70 5 94 18 0 3 39 8 40 20 2 0 106 0 2 90 chain 48689 chr9 141213431 + 25295033 25295713 L1PA8A 6298 - 331 1087 59966 257 9 0 136 10 14 17 0 80 173 23 24 55 chain 57137 chr9 141213431 + 25309253 25309928 L1PA5 6144 - 9 681 54439 321 7 4 347 chain 20583 chr9 141213431 + 25315334 25315561 L1PA5 6144 + 5905 6132 125350 227 chain 160186 chr9 141213431 + 25316511 25318318 L1P1 4361 - 1552 3357 23311 842 10 7 330 0 1 625 chain 113092 chr9 141213431 + 25318318 25319613 L1PA4 6152 + 4844 6152 33172 570 0 1 402 1 0 178 3 10 33 0 1 102 0 5 6 chain 35311 chr9 141213431 + 25327471 25327908 L1PA7 6471 - 4 437 75780 151 0 1 5 10 3 169 0 2 102 chain 43177 chr9 141213431 + 25369634 25370128 LTR2C 499 - 0 499 65202 63 7 6 252 0 6 172 chain 24810 chr9 141213431 + 25374556 25374873 THE1B-int 1605 - 11 328 105837 274 2 1 4 0 1 37 chain 39590 chr9 141213431 + 25438805 25439341 MLT2A2 560 - 0 556 69903 6 0 4 22 0 1 55 0 6 23 4 16 57 6 8 158 0 1 106 6 0 93 chain 58099 chr9 141213431 + 25473283 25474049 MER4E1 777 + 0 769 53927 17 6 0 41 0 1 120 0 1 186 1 0 176 1 9 131 28 28 59 chain 76468 chr9 141213431 + 25484568 25485393 L1PA3long 6157 + 5332 6157 45230 825 chain 92601 chr9 141213431 + 25525699 25527089 L1PA13 3608 - 134 1447 38785 7 1 0 19 9 5 42 0 1 4 2 0 5 1 0 35 1 0 20 1 0 60 21 19 74 19 0 23 1 0 28 1 0 209 54 0 339 7 14 27 8 15 17 0 1 269 8 2 78 chain 3504 chr9 141213431 + 25543698 25543738 MADE1 96 + 56 96 215294 40 chain 42310 chr9 141213431 + 25561872 25562453 MER4A1_ 611 - 0 582 66256 13 0 1 47 19 16 317 15 17 71 2 3 97 chain 10397 chr9 141213431 + 25590829 25591008 MER30 238 + 34 238 158710 71 4 0 10 5 28 55 13 19 21 chain 29949 chr9 141213431 + 25591418 25591777 L1PA6 6164 + 5790 6154 84968 41 0 1 277 6 10 35 chain 29847 chr9 141213431 + 25594101 25594419 AluYb8 318 + 0 318 85292 318 chain 18863 chr9 141213431 + 25609193 25609424 AluSg7 307 + 16 248 130480 112 1 2 118 chain 64388 chr9 141213431 + 25626483 25627301 HERVL-int 5654 + 4817 5649 50847 84 0 3 98 12 13 42 0 1 339 0 2 29 1 8 213 chain 32012 chr9 141213431 + 25627306 25627727 MLT2A1 477 + 0 399 80846 169 4 1 92 0 1 122 20 0 14 chain 15156 chr9 141213431 + 25652981 25653147 L1P2 5180 + 1892 2058 140890 166 chain 47066 chr9 141213431 + 25654216 25654945 MER4A 717 - 0 717 61148 116 124 110 310 0 1 57 0 1 122 chain 12357 chr9 141213431 + 25657156 25657394 LTR8 732 + 487 725 150810 40 10 11 16 26 28 22 4 0 51 1 0 30 4 6 34 chain 26539 chr9 141213431 + 25668926 25669327 LTR7 482 + 0 482 97884 69 12 50 105 24 26 13 1 32 19 0 10 158 chain 286679 chr9 141213431 + 25669330 25672954 HERVH-int 3825 + 1 3825 14245 250 0 5 77 2 1 46 0 2 91 0 4 8 2 0 47 1 0 13 0 1 24 1 0 10 1 0 24 87 0 14 1 38 40 1 22 5 0 1 5 1 0 50 1 0 1000 0 1 312 0 5 153 1 0 38 1 2 183 4 5 23 0 1 158 0 3 407 12 14 36 1 211 21 6 0 6 3 9 25 1 0 106 0 2 325 chain 5240 chr9 141213431 + 25669927 25669985 HERVH-int 3825 + 488 546 191729 58 chain 18123 chr9 141213431 + 25687782 25687994 L1PA5 6144 - 2 214 132533 212 chain 6869 chr9 141213431 + 25712513 25712611 MSTD 398 - 12 111 178434 61 6 7 31 chain 115359 chr9 141213431 + 25732145 25733494 L1P1 4361 + 1 1350 32659 304 0 2 130 1 0 115 15 13 16 0 1 768 chain 74481 chr9 141213431 + 25743591 25744405 L1PA3long 6157 - 0 814 46285 814 chain 2847 chr9 141213431 + 25744411 25744441 L1P1 4361 + 2681 2711 227880 30 chain 2206 chr9 141213431 + 25807658 25807700 LTR12D 1347 - 279 320 236527 14 6 5 22 chain 24848 chr9 141213431 + 25807739 25808446 LTR12D 1347 - 27 760 105634 49 2 0 10 32 62 117 2 1 30 173 299 46 140 13 106 chain 2284 chr9 141213431 + 25807800 25807832 LTR12D 1347 - 320 348 174641 7 5 1 20 chain 8432 chr9 141213431 + 25808227 25808329 LTR12D 1347 - 811 912 168681 96 1 0 5 chain 131600 chr9 141213431 + 25809454 25811433 L1PA7 6471 - 1 1673 27716 6 2 0 59 0 10 581 0 2 106 1 0 33 6 0 52 2 1 160 0 1 110 4 6 30 307 0 155 4 3 134 1 0 42 3 1 23 1 0 157 chain 12766 chr9 141213431 + 25820077 25820234 Tigger3a 397 + 180 337 149190 157 chain 32395 chr9 141213431 + 25847552 25848000 MER4A1 472 + 0 472 80203 15 4 7 8 1 0 145 0 1 47 21 42 207 chain 184808 chr9 141213431 + 25851499 25854085 MER4-int 2692 + 7 2690 20514 4 1 0 25 2 0 53 0 1 27 0 1 9 0 1 37 1 0 127 1 2 259 6 7 128 0 3 34 0 1 166 9 3 23 0 1 139 13 15 15 7 13 145 0 1 78 21 9 85 1 0 23 1 0 4 0 1 30 3 8 29 4 1 246 3 2 17 1 0 102 4 7 380 3 0 6 13 17 38 6 7 122 4 3 53 0 93 72 0 4 6 chain 31886 chr9 141213431 + 25854107 25854535 MER4A1 472 + 9 472 81035 5 0 3 31 0 1 50 0 2 36 0 8 74 16 37 216 chain 23452 chr9 141213431 + 25855407 25855693 L1PA7 6471 - 2 290 113374 181 0 2 105 chain 144864 chr9 141213431 + 25910002 25911646 L1PA5 6144 - 0 1638 25348 785 6 0 853 chain 13053 chr9 141213431 + 25911646 25911792 L1PA5 6144 + 4206 4352 147350 146 chain 333232 chr9 141213431 + 25929296 25933091 L1PA5 6144 - 1 3807 12081 148 0 1 57 0 3 623 6 14 437 12 2 880 0 2 294 1 0 402 0 1 138 0 5 46 0 2 751 chain 3793 chr9 141213431 + 25940635 25940675 MLT2A2 560 + 520 560 210493 40 chain 28890 chr9 141213431 + 25945567 25946226 L1MA1 4479 - 291 894 89493 16 6 0 9 3 1 11 1 0 9 5 4 26 16 14 20 8 7 59 25 31 6 6 0 23 9 5 88 1 0 14 22 20 26 1 3 36 39 5 17 2 0 24 1 0 68 22 21 40 chain 46435 chr9 141213431 + 25960757 25961486 HUERS-P3b-int 2065 - 43 735 61653 80 15 14 43 5 1 64 9 6 12 2 0 73 3 1 91 1 0 19 18 17 84 27 5 41 1 0 141 chain 3519 chr9 141213431 + 25971186 25971227 MER33 330 - 250 291 215081 41 chain 29776 chr9 141213431 + 25977735 25978048 AluYb9 318 - 5 318 85561 313 chain 499037 chr9 141213431 + 25982527 25988727 L1PA6 6164 + 0 6160 6892 78 1 3 87 71 28 40 0 2 279 0 2 48 1 0 285 0 2 106 8 9 117 0 3 91 0 3 5 4 1 37 9 13 214 0 1 869 10 2 273 0 1 247 0 1 142 0 1 194 1 2 32 1 2 478 4 0 233 0 1 11 5 11 109 14 0 130 0 1 4 1 0 103 0 2 340 4 0 30 0 1 1039 1 0 31 0 1 86 0 1 252 0 1 75 chain 115205 chr9 141213431 + 26000049 26002784 L1PB1 5432 + 3656 5415 32715 60 8 11 235 5 6 130 8 9 299 1 2 220 3 0 80 1 0 113 0 3 250 0 1 28 1033 66 43 1 0 8 20 27 33 1 0 16 81 63 11 1 0 34 1 0 11 chain 26254 chr9 141213431 + 26001647 26002048 L1PA8 5853 - 0 398 99007 93 6 5 67 12 10 9 0 1 60 2 0 23 0 1 20 1 0 42 1 0 6 5 7 54 chain 21355 chr9 141213431 + 26016581 26016924 THE1B 368 - 0 368 122666 100 0 1 16 50 60 20 1 0 111 1 16 44 chain 19900 chr9 141213431 + 26018477 26018823 THE1B 368 - 0 368 127483 125 29 42 5 3 0 18 0 1 9 1 0 77 30 35 6 0 6 24 0 1 19 chain 70476 chr9 141213431 + 26022487 26023343 L1PA7 6471 - 13 876 48177 180 0 2 352 4 5 86 0 1 132 0 2 74 0 1 28 chain 355756 chr9 141213431 + 26044751 26048864 L1PA4 6152 + 2038 6152 11454 865 3 0 19 0 1 125 8 7 59 8 9 37 6 5 1183 0 4 283 1 0 29 0 1 917 0 1 415 1 0 154 chain 464339 chr9 141213431 + 26072181 26078476 L1PA8A 6298 - 8 6264 8244 95 0 1 71 0 5 111 2 1 395 0 1 119 0 3 58 0 1 261 0 7 7 7 0 327 0 2 130 1 0 339 0 1 57 4 7 156 5 6 138 0 5 55 1 3 10 0 1 42 1 2 16 0 1 47 25 10 121 0 1 53 0 3 172 60 44 39 3 0 615 11 14 157 0 1 69 0 2 23 0 1 444 0 5 42 4 3 165 1 0 96 4 5 240 0 5 337 2 0 4 7 0 37 1 5 346 6 5 265 0 1 44 6 4 9 1 0 14 3 1 56 2 3 20 6 0 19 5 3 41 1 0 8 4 0 13 2 1 8 2 1 5 1 0 7 0 2 12 7 4 15 2 0 12 1 0 7 2 1 10 60 49 7 3 0 14 0 3 7 38 29 10 1 0 6 chain 8526 chr9 141213431 + 26103996 26104096 HERVL-int 5654 - 5416 5516 168160 100 chain 447129 chr9 141213431 + 26105095 26110708 HERVL-int 5654 + 0 5654 8846 59 0 1 265 0 2 322 2 0 46 0 1 6 3 4 441 8 0 331 1 18 760 1 0 258 1 2 351 1 0 4 0 1 138 12 15 66 13 8 27 0 1 439 2 0 5 0 2 146 0 1 16 0 5 420 1 0 736 10 7 374 0 13 39 0 1 30 0 3 134 0 2 50 0 5 22 0 3 67 0 1 6 chain 5103 chr9 141213431 + 26131611 26131677 MER33 330 + 51 117 194054 66 chain 12632 chr9 141213431 + 26134040 26134203 Tigger3a 397 + 143 305 149721 4 1 0 158 chain 31211 chr9 141213431 + 26205809 26206184 L1PA7 6471 - 4 376 82140 8 3 0 364 chain 123512 chr9 141213431 + 26214188 26215953 SVA_B 1603 - 0 1603 29875 6 2 0 300 0 6 295 0 3 18 1 0 26 0 128 70 83 0 94 77 0 11 116 0 575 0 5 22 22 9 20 12 0 15 chain 2517 chr9 141213431 + 26214917 26214957 SVA_B 1603 - 940 977 218319 35 4 1 1 chain 1900 chr9 141213431 + 26214957 26214989 SVA_B 1603 - 860 892 151531 32 chain 4394 chr9 141213431 + 26215086 26215160 SVA_B 1603 - 1102 1178 151531 18 4 3 37 0 3 15 chain 541137 chr9 141213431 + 26249770 26255791 L1PA3long 6157 + 0 6157 2643 153 0 1 618 3 132 141 0 1 1650 0 1 1653 0 4 1803 chain 38253 chr9 141213431 + 26261367 26261911 LTR19B 566 - 0 560 71773 67 7 9 77 29 30 40 5 14 162 0 4 157 chain 4046 chr9 141213431 + 26276498 26276545 MADE1 96 - 3 50 206691 47 chain 518101 chr9 141213431 + 26277104 26283543 L1PA7 6471 + 0 6467 5370 401 0 1 104 1 4 75 8 6 447 17 3 169 0 4 410 1 2 5 1 0 302 1 0 5 0 1 96 2 1 288 1 0 27 0 2 71 0 3 211 0 1 101 0 3 146 0 4 193 4 2 163 1 0 253 0 1 44 7 11 117 0 3 417 1 2 856 1 0 608 0 1 330 0 2 260 0 17 143 1 0 5 1 2 144 chain 28418 chr9 141213431 + 26323106 26323416 AluYb8 318 - 10 318 91508 182 2 0 126 chain 48192 chr9 141213431 + 26348862 26349566 LTR30 714 + 0 714 60328 37 0 1 211 0 5 146 0 4 39 7 18 30 15 7 126 15 11 11 19 21 25 1 0 22 chain 283014 chr9 141213431 + 26349566 26353457 L1PB1 5432 + 1580 5418 14469 127 1 2 432 0 2 48 0 4 297 1 0 426 1 2 285 0 1 150 0 6 115 0 4 210 18 8 31 1 3 652 0 3 154 14 4 82 5 0 183 29 23 160 5 3 28 28 28 50 5 2 11 59 44 8 2 0 52 19 17 43 1 0 9 40 28 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 28809 chr9 141213431 + 26362132 26362435 AluYh9 303 - 0 303 89850 303 chain 78019 chr9 141213431 + 26377246 26378161 L1PA5 6144 - 510 1427 44502 229 0 1 182 0 1 504 chain 43530 chr9 141213431 + 26378161 26378679 L1PA5 6144 + 5631 6143 64771 56 7 1 455 chain 23841 chr9 141213431 + 26427197 26427490 AluSg7 307 - 7 307 111245 20 0 1 9 0 4 134 0 1 21 1 2 108 chain 234356 chr9 141213431 + 26429424 26432840 L1PB1 5432 + 2042 5422 17077 226 0 3 153 1 7 6 6 0 63 1 0 218 3 0 110 16 14 102 0 1 48 1 0 4 11 11 153 1 6 44 2 0 262 1 6 7 0 1 21 7 8 66 1 2 120 1 2 4 1 0 19 2 4 259 1 0 74 1 0 47 1 0 30 2 1 150 0 2 325 15 16 20 0 4 135 9 12 295 46 20 11 1 0 10 1 0 14 5 1 9 2 0 13 0 3 35 21 19 43 1 0 15 3 0 13 7 0 17 3 1 5 1 0 13 3 1 24 1 0 22 14 12 18 chain 377284 chr9 141213431 + 26445520 26449699 L1PA3long 6157 + 1970 6157 10838 352 5 3 374 1 6 2261 0 1 146 1 2 73 0 1 818 0 1 36 0 1 112 chain 114234 chr9 141213431 + 26479450 26480860 L1PA6 6164 - 8 1432 32990 137 1 19 134 9 10 96 11 0 60 2 0 67 1 5 312 0 4 580 chain 142164 chr9 141213431 + 26480860 26482515 L1PA6 6164 + 3044 4705 25790 141 1 0 4 0 1 437 0 4 494 1 0 39 0 3 538 chain 33709 chr9 141213431 + 26484734 26485284 L1MA1 4479 - 328 875 78080 9 1 0 35 2 0 29 1 0 118 17 13 72 7 8 8 1 0 14 2 0 19 1 0 71 1 0 16 1 0 4 1 9 12 1 0 5 0 1 74 7 8 6 0 1 15 chain 149615 chr9 141213431 + 26491971 26493977 SVA_A 1864 + 18 1855 24670 518 37 0 81 3 0 36 2 0 73 3 0 4 39 0 31 0 2 36 4 1 41 3 0 18 39 0 27 1 0 23 4 1 53 4 7 91 2 0 37 2 0 46 1 2 4 0 1 127 39 0 577 chain 2214 chr9 141213431 + 26492489 26492526 SVA_A 1864 + 652 689 75248 37 chain 1970 chr9 141213431 + 26492728 26492767 SVA_A 1864 + 543 582 138924 39 chain 2333 chr9 141213431 + 26492900 26492939 SVA_A 1864 + 1227 1264 75248 18 2 0 19 chain 29171 chr9 141213431 + 26512934 26513242 AluYa5 310 - 3 310 88192 181 1 0 126 chain 29452 chr9 141213431 + 26522056 26522408 L1PA6 6164 - 2 354 86828 352 chain 56598 chr9 141213431 + 26547238 26547932 L1PA7 6471 + 5775 6468 54784 638 1 13 7 9 0 28 4 0 7 chain 5211 chr9 141213431 + 26555821 26555888 L1MB5 1630 + 1056 1122 192907 25 1 0 41 chain 8906 chr9 141213431 + 26558203 26558319 L1PA7 6471 + 5332 5449 166106 28 4 5 84 chain 27547 chr9 141213431 + 26558319 26558651 L1PA7 6471 + 5450 5785 94511 164 0 3 168 chain 57347 chr9 141213431 + 26558659 26559320 L1PA7 6471 + 5794 6455 54314 661 chain 190336 chr9 141213431 + 26586377 26588504 L1P1 4361 + 2126 4252 20013 2025 1 0 101 chain 27209 chr9 141213431 + 26588625 26588974 L1PA8A 6298 - 6 355 95567 106 4 5 10 8 7 221 chain 8310 chr9 141213431 + 26591726 26591829 THE1B-int 1605 - 1502 1605 169343 103 chain 5378 chr9 141213431 + 26608826 26609068 MER68B 564 + 267 512 191221 34 161 164 47 chain 85030 chr9 141213431 + 26613362 26614369 LTR13 1007 - 0 1007 41502 295 0 17 12 17 0 239 1 0 58 4 5 381 chain 141168 chr9 141213431 + 26621344 26623061 L1PA7 6471 + 4727 6470 25959 229 6 7 96 0 5 550 0 2 84 0 2 83 1 2 183 0 7 262 3 10 14 0 1 56 0 1 24 1 0 125 chain 29202 chr9 141213431 + 26633486 26633794 AluYk12 309 - 1 309 88040 308 chain 122172 chr9 141213431 + 26663622 26665223 SVA_B 1603 + 1 1603 30324 6 1 0 6 1 0 23 24 8 22 0 5 99 0 2 349 0 40 170 77 0 90 0 3 50 1 85 10 1 0 68 37 0 168 0 3 389 3 0 6 chain 3029 chr9 141213431 + 26664323 26664380 SVA_B 1603 + 459 518 176963 13 0 3 5 1 0 38 chain 25462 chr9 141213431 + 26706766 26707070 AluSp 311 + 0 311 102395 68 0 7 236 chain 80760 chr9 141213431 + 26715147 26716176 LTR5_Hs 974 - 0 974 43286 54 1 0 49 2 0 37 8 15 395 60 0 138 0 1 285 chain 521065 chr9 141213431 + 26729617 26736022 L1PA7 6471 - 12 6462 5046 417 0 1 11 9 8 32 0 1 361 1 8 82 0 1 551 2 1 36 1 0 134 1 0 5 0 2 615 0 2 597 0 8 40 0 1 48 8 7 385 0 4 202 0 13 109 15 0 145 13 8 13 1 10 125 1 19 130 0 1 121 0 1 240 0 1 441 0 1 412 0 1 78 1 0 24 1 0 4 16 17 83 4 0 6 4 8 206 3 4 155 4 3 46 2 0 70 0 1 394 chain 13123 chr9 141213431 + 26747035 26747582 MER44A 345 + 68 323 147754 28 1 0 4 0 5 21 307 0 47 1 8 23 8 13 20 22 0 11 0 21 54 chain 20022 chr9 141213431 + 26752713 26753031 THE1B 368 + 0 341 127078 44 0 15 60 10 13 9 0 8 20 16 15 12 2 0 110 0 1 4 5 4 26 chain 6169 chr9 141213431 + 26770370 26770454 HSMAR2 1300 - 93 175 183810 23 2 0 59 chain 116294 chr9 141213431 + 26777724 26779036 L1PA5 6144 + 4831 6140 32344 1137 7 5 18 1 0 149 chain 20985 chr9 141213431 + 26779571 26779904 L1PA14 3548 + 3121 3456 123973 10 2 0 6 1 0 56 0 16 9 2 1 113 1 0 9 6 2 36 4 2 12 1 0 3 1 0 17 3 2 41 chain 45015 chr9 141213431 + 26811646 26812404 L1PA17 2846 + 1930 2693 63040 302 98 101 180 1 4 16 1 0 30 16 19 18 1 0 36 19 17 40 chain 21871 chr9 141213431 + 26825450 26825731 MER47A 366 - 71 353 120747 131 1 0 94 0 2 55 chain 238405 chr9 141213431 + 26826020 26828765 HERV9-int 5642 + 2082 4824 16858 1730 3 0 1012 chain 58298 chr9 141213431 + 26830183 26830921 LTR12 884 + 0 869 53806 105 1 0 147 0 91 35 2 0 31 10 20 300 0 33 107 chain 256750 chr9 141213431 + 26834832 26837765 L1PA5 6144 + 2782 6142 15894 130 1 22 317 0 5 426 2 0 125 0 1 122 1 2 462 0 8 73 0 3 20 0 1 732 3 0 60 0 4 24 0 393 271 16 15 137 4 0 7 chain 8370 chr9 141213431 + 26877162 26877306 Tigger4b 360 + 168 317 169027 23 18 17 43 0 1 14 0 2 35 1 4 10 chain 8778 chr9 141213431 + 26895239 26895375 MLT1B 390 + 28 171 166776 26 0 11 45 1 0 5 0 1 18 1 0 29 3 0 8 chain 8190 chr9 141213431 + 26935687 26935809 MER30 238 - 0 111 170004 39 2 0 65 9 0 7 chain 6071 chr9 141213431 + 26939438 26939595 L1M4c 1769 + 1592 1742 184643 42 1 0 11 61 56 29 1 0 12 chain 10420 chr9 141213431 + 26944488 26944653 MER30 238 - 2 180 158596 97 5 0 8 4 0 7 2 25 26 1 0 15 chain 151365 chr9 141213431 + 26962955 26964617 L1PA2 6032 - 0 1658 24418 888 4 0 770 chain 9549 chr9 141213431 + 27002283 27002390 LTR7Y 441 - 0 107 162835 107 chain 140563 chr9 141213431 + 27025480 27027396 L1PBa 3878 + 1164 3117 26062 7 2 0 39 0 2 169 0 4 76 1 5 139 0 3 6 2 0 3 2 0 6 1 0 95 1 2 131 0 1 51 0 2 5 4 7 153 1 0 45 0 8 203 0 2 335 1 0 44 6 11 158 16 20 62 0 3 69 0 3 1 6 0 14 0 4 50 0 3 12 chain 19800 chr9 141213431 + 27050666 27050886 L1PA5 6144 + 5917 6137 127813 220 chain 25488 chr9 141213431 + 27052879 27053159 AluYf4 310 - 29 310 102281 267 0 1 13 chain 9787 chr9 141213431 + 27072360 27072478 THE1B-int 1605 + 1481 1600 161671 114 0 1 4 chain 5046 chr9 141213431 + 27073085 27073145 THE1B 368 + 295 356 194671 11 0 1 49 chain 3452 chr9 141213431 + 27077455 27077494 MSTA 426 + 387 426 216166 39 chain 3771 chr9 141213431 + 27082861 27082907 MADE1 96 + 50 96 210796 46 chain 111356 chr9 141213431 + 27092470 27093898 LTR12C 1709 + 0 1708 33847 256 37 37 4 0 1 40 0 43 37 0 5 4 5 0 235 0 120 55 1 0 78 0 2 195 1 0 8 2 0 95 0 17 164 0 102 115 13 12 83 chain 5518 chr9 141213431 + 27099244 27099306 L1PA8 5853 + 5791 5853 189860 62 chain 185276 chr9 141213431 + 27126974 27129273 L1PA7 6471 - 1 2306 20474 37 3 0 108 12 12 26 12 11 91 0 3 170 0 2 78 7 0 108 0 2 120 0 2 60 1 2 17 2 1 76 0 1 4 1 0 1015 0 2 310 0 2 13 0 4 28 chain 55044 chr9 141213431 + 27137839 27138574 LTR12 884 - 0 884 55681 40 5 23 56 0 8 376 50 0 43 0 1 61 0 132 26 0 41 52 1 0 25 chain 2972 chr9 141213431 + 27138318 27138366 LTR12 884 - 503 552 167371 43 0 1 5 chain 12002 chr9 141213431 + 27154172 27154311 L1PA7 6471 - 7 146 152190 139 chain 24340 chr9 141213431 + 27169949 27170305 THE1C 375 - 29 375 108423 148 34 31 73 7 0 94 chain 86177 chr9 141213431 + 27175002 27175963 L1PA4 6152 - 16 977 41085 961 chain 7925 chr9 141213431 + 27186397 27186500 MER2 342 - 146 249 171476 103 chain 11861 chr9 141213431 + 27197094 27197273 MSTA 426 - 247 426 152781 50 1 0 20 18 19 90 chain 22051 chr9 141213431 + 27219262 27219600 L1PA8 5853 + 5476 5798 120013 45 5 0 41 1 0 48 2 0 68 2 1 9 13 12 40 2 1 19 1 0 20 4 0 18 chain 489091 chr9 141213431 + 27220505 27226731 L1PA7 6471 + 0 6469 7405 156 0 15 38 1 2 10 0 9 176 1 2 98 0 15 72 5 0 395 13 8 36 8 7 45 6 21 189 0 23 125 0 3 131 0 1 139 5 13 91 0 19 160 1 0 163 0 1 65 0 1 191 2 0 39 0 94 80 2 0 45 0 2 72 4 0 84 2 0 9 17 19 166 4 9 40 1 0 4 0 1 16 7 11 392 2 0 34 0 1 11 0 4 25 0 3 19 6 7 166 6 5 31 0 1 127 5 6 65 0 1 204 0 2 22 0 1 648 4 22 394 0 1 23 11 13 275 0 3 83 1 4 591 0 6 19 0 1 148 chain 31860 chr9 141213431 + 27230535 27230895 L1PA7 6471 + 4905 5269 81083 290 0 4 70 chain 96373 chr9 141213431 + 27230895 27232073 L1PA7 6471 + 5275 6461 37710 339 0 4 471 2 1 185 0 31 7 2 0 7 30 6 135 chain 544496 chr9 141213431 + 27239368 27245513 L1PA4 6152 + 0 6143 2144 1716 1 0 1461 1 0 1334 1 0 790 1 0 59 1 2 641 0 1 139 chain 499038 chr9 141213431 + 27251183 27257689 L1PA7 6471 + 0 6461 6891 179 26 25 163 4 8 37 15 0 234 5 6 7 1 0 141 5 6 131 5 15 325 12 16 22 4 0 124 0 46 146 2 0 98 5 14 130 0 2 304 41 1 452 27 0 271 0 2 153 0 21 17 0 4 198 11 2 68 8 7 129 1 0 12 6 9 12 7 11 30 0 5 19 0 4 6 2 0 360 0 1 374 0 3 298 92 4 333 1 0 94 0 1 116 0 4 81 1 0 314 0 1 29 0 5 489 0 13 329 chain 25109 chr9 141213431 + 27264716 27265083 L1PA8 5853 - 0 365 104233 93 1 0 19 2 1 47 0 1 13 2 1 13 5 8 47 12 10 36 1 0 76 chain 25333 chr9 141213431 + 27275424 27275711 AluSc5 308 - 1 288 103057 287 chain 34715 chr9 141213431 + 27297359 27297815 LTR3A 482 - 0 482 76603 39 0 1 23 0 1 15 1 0 22 0 1 31 0 1 141 0 14 21 6 15 157 chain 25484 chr9 141213431 + 27302693 27303010 AluY 311 + 0 311 102296 64 0 1 64 7 0 182 chain 3117 chr9 141213431 + 27305296 27305334 MIRb 242 + 92 130 222594 38 chain 527563 chr9 141213431 + 27317695 27325066 L1PA7 6471 - 6 6471 4444 55 0 2 659 0 1 44 3 6 77 2 1 256 312 0 538 0 1 267 316 0 85 0 1 420 1 0 4 1 2 35 0 1 216 30 31 319 0 1 85 5 6 79 1 3 356 0 3 135 0 1 124 323 0 130 0 2 426 1 0 564 0 6 16 10 27 307 1 0 268 2 3 64 1 0 434 0 1 196 0 4 203 chain 89219 chr9 141213431 + 27342425 27343489 SVA_B 1603 + 0 1603 39921 9 31 0 13 0 26 21 14 1 413 0 551 134 0 6 429 chain 3304 chr9 141213431 + 27348694 27348736 MLT1F1 559 + 74 116 218908 42 chain 7054 chr9 141213431 + 27370639 27370733 MLT1A0 366 + 256 349 177075 82 1 0 11 chain 196372 chr9 141213431 + 27418113 27420920 L1PB1 5432 + 2738 5411 19474 80 1 0 7 15 17 93 5 9 120 2 1 120 0 3 242 5 38 134 3 1 133 2 1 244 0 1 8 1 0 31 0 1 126 0 1 259 0 1 219 3 0 487 141 1 22 1 0 9 27 20 50 5 4 16 1 0 44 87 69 20 1 0 21 1 0 13 1 0 7 chain 18105 chr9 141213431 + 27448315 27448668 THE1B 368 - 0 360 132584 43 18 19 66 57 63 42 5 4 14 9 10 99 chain 9412 chr9 141213431 + 27456711 27456881 MER3 215 + 5 169 163495 21 38 32 111 chain 3192 chr9 141213431 + 27458552 27458585 AluJb 308 + 204 237 221070 33 chain 28192 chr9 141213431 + 27464647 27464990 THE1A 353 - 12 353 92336 143 1 0 88 1 0 110 chain 128944 chr9 141213431 + 27464995 27466542 THE1A-int 1579 - 5 1579 28324 822 0 1 213 0 10 221 2 15 182 13 16 94 chain 27742 chr9 141213431 + 27466554 27466897 THE1A 353 - 12 353 93897 45 1 0 186 1 0 110 chain 78073 chr9 141213431 + 27493187 27494540 MER11C 1089 + 0 1069 44481 164 299 0 83 0 9 57 0 4 215 70 67 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 4 chain 111691 chr9 141213431 + 27500351 27501661 L1PA6 6164 + 4759 6068 33752 645 4 2 419 0 1 177 7 0 13 0 7 45 chain 7465 chr9 141213431 + 27544619 27544981 L1MA8 2339 - 15 299 174369 25 55 44 48 72 16 31 9 21 20 81 58 21 chain 31355 chr9 141213431 + 27552661 27553062 L1PREC2 3366 - 1329 1739 81894 14 0 1 257 1 0 47 0 9 82 chain 57721 chr9 141213431 + 27577418 27578050 L1PA3long 6157 + 5523 6157 54126 174 0 1 309 0 1 149 chain 324509 chr9 141213431 + 27611276 27615376 L1P3 4156 - 17 4156 12417 24 2 1 7 2 0 101 1 0 86 0 4 233 6 8 12 2 0 85 0 4 10 0 1 69 1 0 51 0 4 252 0 3 87 0 4 460 6 1 174 17 18 366 0 1 513 0 1 30 0 13 163 1 0 446 0 1 429 6 7 6 1 0 58 2 0 87 6 5 39 23 30 33 6 15 197 chain 22428 chr9 141213431 + 27621884 27622156 AluY 311 + 0 269 118345 28 1 0 105 2 0 136 chain 33232 chr9 141213431 + 27637120 27637576 MLT2A1 477 + 0 477 78828 168 15 13 23 0 1 197 12 34 41 chain 465170 chr9 141213431 + 27637576 27643191 HERVL-int 5654 + 0 5654 8212 98 0 1 103 3 14 339 5 4 25 1 2 47 4 17 422 0 1 51 1 0 55 4 0 9 0 4 485 0 6 228 0 1 1883 6 7 111 0 1 4 6 5 657 0 1 364 0 1 420 1 5 169 5 1 65 0 4 44 chain 32745 chr9 141213431 + 27643193 27643899 MLT2A1 477 + 2 477 79623 166 9 6 7 0 1 5 0 1 6 1 0 9 0 1 73 1 0 4 0 1 90 1 0 28 258 29 48 chain 476998 chr9 141213431 + 27644980 27651680 L1PA8A 6298 + 41 6286 7831 15 1 0 12 20 9 17 10 7 18 51 39 11 2 1 5 1 0 12 2 0 17 8 5 11 16 13 11 20 14 8 2 0 27 21 15 22 8 0 78 2 0 14 1 0 11 4 2 64 13 12 297 4 0 129 2 1 105 2 3 89 0 1 4 10 9 33 7 7 41 1 0 209 0 3 314 4 0 442 0 6 43 0 11 100 1 0 276 2 0 241 308 10 147 0 2 131 0 1 196 5 4 332 16 0 20 0 2 39 4 11 107 1 2 69 0 12 395 0 1 33 0 2 681 111 0 1214 chain 58778 chr9 141213431 + 27676061 27676791 LTR12 884 + 0 883 53537 187 0 157 33 2 0 80 0 1 105 2 0 145 1 0 175 chain 3384 chr9 141213431 + 27678121 27678177 MIR 256 - 47 102 217383 8 1 0 4 0 1 10 1 0 32 chain 551791 chr9 141213431 + 27690517 27696538 L1PA2 6032 + 1 6024 1211 73 0 1 181 1 0 114 0 1 5495 5 0 7 0 6 145 chain 29739 chr9 141213431 + 27710045 27710361 AluYb8 318 - 2 318 85695 316 chain 6367 chr9 141213431 + 27720020 27720143 MLT1E1A 663 - 33 158 182271 41 32 34 50 chain 190925 chr9 141213431 + 27736676 27740506 L1PA14 3548 - 75 3458 19962 8 1 0 9 6 0 40 2 1 19 1 0 9 1 0 8 4 2 33 18 12 111 1 0 84 1 0 6 2 0 11 7 5 5 2 0 105 8 4 47 2 0 15 3 1 35 0 1 115 0 4 95 0 1 4 5 0 18 0 1 128 1 0 8 1 0 9 0 1 15 0 3 136 3 5 8 0 1 124 0 17 235 6 9 73 889 565 239 1 6 99 5 8 19 4 0 34 11 1 37 0 2 82 8 0 86 0 3 46 34 26 84 6 8 94 1 0 14 1 4 5 26 0 7 70 0 124 2 0 31 2 0 30 2 1 20 1 0 19 0 3 47 4 0 58 chain 28146 chr9 141213431 + 27738853 27739153 AluYa5 310 - 10 310 92474 300 chain 4790 chr9 141213431 + 27740096 27740152 L1PA14 3548 + 379 435 195578 56 chain 7783 chr9 141213431 + 27749864 27749957 MER5A1 166 + 41 134 172401 93 chain 48234 chr9 141213431 + 27767409 27768024 L1PA8 5853 + 5243 5853 60287 75 0 1 198 1 0 45 2 1 45 2 0 71 1 0 20 1 2 39 3 2 18 1 0 93 chain 43968 chr9 141213431 + 27770724 27771275 MER41A 554 + 0 554 64239 363 0 1 14 3 0 90 0 5 81 chain 513976 chr9 141213431 + 27778855 27785642 L1PA7 6471 - 2 6471 5779 11 3 0 72 2 0 70 0 1 590 4 7 78 0 1 17 4 7 261 3 0 516 362 0 568 12 14 88 0 1 21 9 8 135 1 0 167 2 0 121 0 1 4 3 1 159 5 9 44 2 0 38 15 13 121 1 3 222 0 4 204 1 5 169 6 9 55 18 13 42 0 5 72 0 2 82 0 1 461 0 3 120 0 1 4 1 0 633 1 5 394 0 1 221 0 8 21 5 18 135 0 1 295 0 1 6 1 0 109 chain 26588 chr9 141213431 + 27780507 27780843 L1PA7 6471 - 4 344 97699 6 3 0 163 1 3 84 0 5 79 chain 42691 chr9 141213431 + 27790548 27791095 MLT2A2 560 + 0 558 65788 111 0 1 21 1 0 268 7 18 139 chain 116395 chr9 141213431 + 27794891 27796431 L1PA8 5853 - 64 1598 32313 29 1 0 19 2 1 40 10 8 4 0 1 8 2 1 26 0 2 5 19 17 20 3 1 45 1 0 472 2 0 4 0 1 73 0 5 120 1 0 153 12 11 285 1 0 15 1 0 24 0 1 143 chain 34143 chr9 141213431 + 27805164 27805622 LTR46 455 - 0 455 77423 29 0 4 4 4 0 111 9 8 110 7 5 184 chain 44383 chr9 141213431 + 27810863 27811458 L1P3 4156 + 3540 4137 63709 280 7 6 222 0 6 53 2 0 7 2 1 22 chain 158706 chr9 141213431 + 27832981 27835338 L1PA10 4194 - 33 4019 23502 11 2 1 33 3 0 34 1 0 183 39 166 120 0 1 314 0 2 84 1 0 37 0 1 45 3 1 182 9 11 230 0 8 34 3 0 271 0 1 142 10 1580 181 3 0 12 18 14 45 4 3 7 1 0 10 8 0 3 1 0 15 1 0 2 0 3 11 1 0 10 1 0 18 2 0 22 1 0 5 60 27 10 2 0 11 16 15 4 1 0 9 2 0 9 14 10 6 2 0 8 3 0 9 3 0 15 chain 24145 chr9 141213431 + 27844438 27844812 THE1C 375 - 0 375 109498 26 1 0 57 2 0 97 16 9 7 0 2 57 18 15 21 0 14 46 2 0 24 chain 99435 chr9 141213431 + 27901393 27902523 L1PA5 6144 - 13 1151 36915 337 0 5 412 1 0 79 1 5 300 chain 75200 chr9 141213431 + 27902928 27904019 L1PB1 5432 - 23 1080 45921 5 1 0 13 1 0 21 1 0 24 2 0 14 42 28 8 3 0 15 1 0 44 1 0 16 2 1 53 2 0 8 27 21 24 5 0 7 4 7 199 0 1 87 0 1 104 7 6 350 chain 6455 chr9 141213431 + 27954681 27954763 THE1A 353 - 0 83 181602 67 0 1 15 chain 24600 chr9 141213431 + 27966360 27966734 L1PA8 5853 + 5486 5853 106997 71 6 5 47 3 1 68 2 1 15 11 10 36 2 1 19 2 1 92 chain 71970 chr9 141213431 + 27987865 27988697 L1PA5 6144 - 12 853 47485 58 0 1 260 0 3 421 0 3 14 0 2 79 chain 4068 chr9 141213431 + 27999852 27999898 MADE1 96 - 50 96 206345 46 chain 4764 chr9 141213431 + 28003407 28003463 MER6 865 + 657 713 197760 56 chain 3545 chr9 141213431 + 28059067 28059109 LTR14B 630 + 0 42 214632 42 chain 23123 chr9 141213431 + 28078567 28078858 AluSp 311 + 1 296 115027 90 0 4 64 2 0 117 0 2 18 chain 356368 chr9 141213431 + 28088634 28092696 L1PA5 6144 + 2052 6135 11445 167 1 0 705 0 1 245 1 0 64 0 1 11 0 1 167 0 1 464 1 0 343 1 2 576 0 14 183 0 1 280 0 1 12 0 4 700 1 0 140 chain 73122 chr9 141213431 + 28097042 28097843 L1PA3long 6157 + 5356 6157 46968 801 chain 185587 chr9 141213431 + 28108963 28111400 L1PA8 5853 + 3413 5853 20458 364 4 5 375 0 3 107 0 1 66 3 0 422 0 1 129 5 4 113 5 10 53 21 24 474 1 0 43 3 1 71 1 0 14 2 0 6 13 14 21 31 29 90 chain 557623 chr9 141213431 + 28111913 28117863 L1HS 6032 - 7 5960 541 4988 0 3 962 chain 4510 chr9 141213431 + 28149310 28149464 SVA_F 1814 + 823 1236 200675 33 11 211 25 62 121 23 chain 3606 chr9 141213431 + 28149841 28150093 SVA_F 1814 + 557 842 213550 30 34 190 6 3 0 19 2 0 5 125 10 5 3 0 20 chain 108616 chr9 141213431 + 28156582 28158044 THE1B-int 1605 - 66 1571 34534 360 1 0 8 0 2 20 7 11 180 3 4 45 0 3 184 21 18 183 3 2 57 5 30 104 0 1 43 4 16 234 chain 17051 chr9 141213431 + 28158078 28158381 THE1B 368 - 0 368 135456 36 9 49 30 45 55 26 1 0 117 0 15 20 3 4 16 chain 6181 chr9 141213431 + 28181763 28181833 L1PA8A 6298 - 1597 1667 181669 70 chain 131169 chr9 141213431 + 28181833 28183395 L1PA8A 6298 + 4702 6273 27822 120 1 0 667 10 16 63 0 2 66 1 0 331 0 3 303 chain 58412 chr9 141213431 + 28201076 28201708 L1PA2 6032 - 2 633 53738 157 1 0 474 chain 8228 chr9 141213431 + 28201925 28202289 MLT1C 463 - 92 462 169790 21 71 69 35 2 15 25 16 20 43 127 118 24 chain 39729 chr9 141213431 + 28234384 28234913 MLT2A2 560 + 4 560 69717 136 15 16 200 0 12 38 0 11 71 0 3 69 chain 167479 chr9 141213431 + 28243728 28246022 L1PA10 4194 + 1837 4161 22337 385 0 1 277 12 32 97 4 5 23 1 0 19 3 7 135 0 1 122 5 9 6 7 0 513 6 9 126 12 13 85 0 9 276 7 8 87 40 34 34 1 0 11 chain 294250 chr9 141213431 + 28306339 28309590 L1PA3long 6157 + 2906 6157 13750 3251 chain 93014 chr9 141213431 + 28311003 28312059 MER11C 1089 - 16 1089 38652 200 0 13 539 0 4 317 chain 18136 chr9 141213431 + 28325433 28325770 THE1B 368 + 0 342 132502 64 1 0 26 26 27 58 41 39 18 0 8 66 7 6 30 chain 553631 chr9 141213431 + 28348132 28354160 L1PA2 6032 + 0 6030 991 256 1 0 2275 0 1 3345 1 2 135 0 1 15 chain 63976 chr9 141213431 + 28387019 28387980 LTR12 884 + 0 861 51019 24 1 0 54 25 0 153 0 4 10 0 1 20 1 3 86 0 22 307 103 0 177 chain 2082 chr9 141213431 + 28387098 28387123 LTR12 884 + 185 210 141091 25 chain 2685 chr9 141213431 + 28387769 28387803 LTR12 884 + 783 817 179020 34 chain 65461 chr9 141213431 + 28401188 28402009 L1PA8A 6298 - 9 833 50351 105 0 1 223 0 1 290 0 1 4 2 1 172 1 2 24 chain 26308 chr9 141213431 + 28408470 28408766 L1PA4 6152 + 5843 6140 98798 165 0 1 131 chain 21017 chr9 141213431 + 28433624 28433911 L1PB2 3958 + 3556 3838 123856 61 1 0 64 2 1 71 2 0 21 6 5 59 chain 6393 chr9 141213431 + 28440932 28441201 MLT1A1 405 + 0 343 182084 19 15 20 4 1 0 40 142 212 48 chain 96348 chr9 141213431 + 28481624 28482688 L1PA3long 6157 - 0 1065 37720 4 0 1 1060 chain 21998 chr9 141213431 + 28482688 28482930 L1PA3long 6157 + 4841 5083 119846 242 chain 3104 chr9 141213431 + 28494130 28494170 MADE1 96 + 5 45 222860 40 chain 394704 chr9 141213431 + 28494229 28498796 L1PA5 6144 - 12 6144 10289 844 0 1 116 5 6 447 0 1560 342 2 1 507 0 2 1304 4 5 705 10 11 281 chain 108316 chr9 141213431 + 28511192 28512520 HERVL-int 5654 - 1240 2584 34612 237 1 7 340 17 26 692 4 5 37 chain 25091 chr9 141213431 + 28512696 28513079 MLT2A1 477 - 92 473 104344 19 8 9 150 8 0 29 31 36 22 0 1 4 1 0 111 chain 3162 chr9 141213431 + 28515503 28515538 Tigger1 2417 + 1464 1499 221715 35 chain 5068 chr9 141213431 + 28546030 28546091 L1MA8 2339 + 2025 2086 194445 61 chain 461775 chr9 141213431 + 28553071 28558155 L1PA2 6032 + 938 6030 8340 8 0 1 1736 0 3 1082 0 2 1230 0 1 628 0 1 400 chain 208099 chr9 141213431 + 28588975 28591308 L1PA4 6152 + 3815 6143 18630 884 2 0 79 2 1 522 2 0 842 chain 19929 chr9 141213431 + 28629877 28630103 L1PA2 6032 - 108 335 127362 153 0 1 73 chain 10567 chr9 141213431 + 28630103 28630220 L1PA2 6032 + 5913 6030 157968 117 chain 30529 chr9 141213431 + 28631159 28631564 L1PA5 6144 - 0 1324 83371 126 13 20 5 6 0 58 0 913 176 0 5 21 chain 451078 chr9 141213431 + 28635830 28641040 L1PA5 6144 - 7 5219 8735 106 1 0 240 0 1 415 1 0 74 0 4 673 1 2 690 1 2 158 0 2 2323 19 14 508 chain 24294 chr9 141213431 + 28675594 28675887 AluSx1 309 + 8 301 108685 293 chain 75293 chr9 141213431 + 28699277 28700278 MER11A 1151 + 0 1151 45873 55 0 99 140 4 0 164 1 0 80 4 5 17 1 0 122 6 9 52 0 4 56 1 0 15 7 41 14 0 1 56 0 16 88 1 0 117 chain 58157 chr9 141213431 + 28721009 28721818 L1PA8 5853 + 5036 5853 53897 50 2 1 92 6 16 25 6 7 337 1 0 44 2 0 70 30 28 34 2 1 16 6 5 14 1 6 71 chain 26300 chr9 141213431 + 28743222 28743532 L1PA7 6471 - 39 350 98828 205 5 6 100 chain 13756 chr9 141213431 + 28756588 28756863 THE1D 372 + 42 311 145417 7 9 0 25 8 6 64 4 5 14 1 0 7 3 0 17 39 47 77 chain 21616 chr9 141213431 + 28760658 28761141 L1PB1 5432 - 129 489 121707 7 3 0 16 1 0 43 2 0 16 2 1 53 2 0 5 173 59 160 chain 30893 chr9 141213431 + 28822426 28822847 MLT2A1 477 + 25 477 82692 144 4 1 215 4 0 6 5 43 43 chain 157636 chr9 141213431 + 28876265 28878019 L1PA3long 6157 - 15 1769 23643 1754 chain 109075 chr9 141213431 + 28878019 28879243 L1PA3long 6157 + 3176 4402 34383 12 0 1 73 0 1 4 1 0 801 0 1 333 chain 87754 chr9 141213431 + 28880202 28881212 LTR5A 1029 + 0 1029 40462 134 0 13 732 0 6 144 chain 46471 chr9 141213431 + 28893751 28894267 L1PA3long 6157 - 0 516 61621 516 chain 7020 chr9 141213431 + 28928421 28928509 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29049093 L1MA1 4479 + 2893 4136 43698 26 0 1 38 1 0 27 2 0 22 9 13 75 4 2 61 2 0 17 8 4 44 345 0 28 1 0 12 5 0 128 11 0 129 2 0 18 0 1 140 22 27 8 1 0 25 2 0 5 13 12 18 4 5 50 1 0 14 6 4 12 1 0 88 1 0 5 3 0 122 12 11 22 2 0 21 1 0 8 chain 5296 chr9 141213431 + 29053352 29053410 L1PA4 6152 - 173 231 192054 58 chain 14727 chr9 141213431 + 29053410 29053569 L1PA4 6152 + 5992 6151 142175 159 chain 3624 chr9 141213431 + 29060955 29061127 L1MEf 1413 + 649 835 213255 34 104 120 5 3 0 20 0 1 6 chain 79277 chr9 141213431 + 29080051 29080972 L1PA5 6144 - 2610 3528 43922 273 0 2 89 3 1 31 0 1 393 4 0 128 chain 224953 chr9 141213431 + 29080973 29083591 L1PA5 6144 + 3530 6142 17598 268 4 0 11 1 0 535 0 4 414 1 0 262 8 7 263 9 8 688 1 2 134 0 1 8 4 0 7 chain 11283 chr9 141213431 + 29101708 29101861 L1MA2 4263 - 149 298 155116 10 1 0 46 4 1 92 chain 34849 chr9 141213431 + 29114418 29114818 L1PA4 6152 - 16 416 76407 97 0 1 140 1 0 162 chain 115951 chr9 141213431 + 29123965 29125423 L1PA8 5853 + 4401 5853 32475 268 2 1 339 2 0 73 0 2 359 0 1 92 0 1 27 2 0 44 2 0 71 22 21 40 2 1 21 1 0 91 chain 3899 chr9 141213431 + 29130099 29130142 MER41-int 2638 + 544 587 208877 43 chain 5847 chr9 141213431 + 29151726 29151883 L1PA16 3655 + 76 231 186715 22 68 66 67 chain 22612 chr9 141213431 + 29154169 29154468 AluY 311 + 9 303 117519 33 1 0 6 20 20 26 2 0 39 2 0 170 chain 160816 chr9 141213431 + 29188017 29190057 SVA_D 2077 - 0 2077 23225 447 55 0 172 0 98 147 19 16 159 6 8 40 1 0 6 37 0 36 4 0 6 85 0 24 2 0 195 0 1 112 0 116 104 0 3 355 1 5 27 chain 3039 chr9 141213431 + 29189069 29189106 SVA_D 2077 - 739 816 75020 27 9 49 1 chain 6982 chr9 141213431 + 29189152 29189237 SVA_D 2077 - 863 948 75020 85 chain 11977 chr9 141213431 + 29253187 29253377 L1PA16 3655 + 3421 3585 152298 135 22 0 21 4 0 8 chain 540572 chr9 141213431 + 29270224 29276347 L1PA5 6144 + 0 6143 2725 120 0 14 1101 0 1 2250 0 4 449 0 1 340 0 2 345 0 1 1504 4 1 10 chain 40352 chr9 141213431 + 29292221 29292663 L1PA3long 6157 - 0 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3 7 0 1 41 0 5 100 2 0 84 0 2 133 1 0 164 0 1 24 1 0 216 27 19 68 1 0 115 0 1 144 0 10 129 2 1 367 2 0 787 0 1 23 0 1 14 5 0 98 0 12 319 0 225 380 5 4 392 0 1 71 1 0 421 1 4 512 chain 36285 chr9 141213431 + 29384216 29384675 LTR2 463 + 0 463 74523 129 0 3 10 15 16 305 chain 58321 chr9 141213431 + 29384823 29385548 L1PA7 6471 + 5737 6457 53798 87 8 0 18 2 3 49 0 2 184 0 1 243 6 5 128 chain 60884 chr9 141213431 + 29427016 29427729 L1PA7 6471 - 1451 2163 52306 545 0 1 68 2 0 98 chain 115160 chr9 141213431 + 29427729 29429187 L1PA7 6471 + 5018 6464 32728 302 1 2 65 0 1 233 1 0 10 0 2 6 8 7 110 6 7 238 25 9 309 1 2 143 chain 3332 chr9 141213431 + 29433061 29433107 L1MA1 4479 - 327 372 218365 10 1 0 35 chain 550476 chr9 141213431 + 29450395 29456731 L1PA3long 6157 + 4 6157 1378 574 0 1 467 1 0 144 0 3 145 189 0 920 0 2 3135 0 1 761 chain 6659 chr9 141213431 + 29451842 29451915 L1PA3long 6157 + 1455 1528 177948 73 chain 109446 chr9 141213431 + 29458451 29460003 L1PB1 5432 - 12 1544 34331 16 1 0 6 8 7 17 7 6 22 2 0 15 7 4 30 9 4 13 7 6 38 2 1 14 2 1 54 14 8 12 1 0 8 1 0 24 1 0 11 3 0 297 0 1 178 2 0 115 0 4 168 0 5 447 chain 54267 chr9 141213431 + 29461728 29462533 L1PA13 3608 - 171 970 56188 41 16 15 18 2 3 24 1 0 42 0 1 20 2 0 89 31 29 27 1 0 156 2 3 177 2 1 77 1 0 76 chain 60509 chr9 141213431 + 29463551 29464606 L1PA13 3608 + 94 1138 52574 15 6 4 26 3 0 20 71 59 71 1 0 3 1 0 124 14 12 17 0 3 10 14 5 19 1 0 16 70 65 67 2 0 131 0 25 162 10 8 16 0 1 165 chain 57040 chr9 141213431 + 29481118 29481796 L1PA7 6471 - 4 677 54508 6 5 0 145 1 0 5 1 3 177 1 0 337 chain 53370 chr9 141213431 + 29494033 29494780 L1PA8 5853 + 5138 5853 56792 403 30 4 19 1 0 46 2 0 68 11 12 6 2 0 5 1 0 39 2 1 19 1 0 16 0 1 76 chain 6909 chr9 141213431 + 29533247 29533329 L1PA15 4387 + 718 800 178127 82 chain 44385 chr9 141213431 + 29547091 29547647 MER41A 554 + 0 554 63708 145 2 0 409 chain 43428 chr9 141213431 + 29554044 29554596 MER41A 554 + 0 554 64899 343 0 1 53 1 2 155 chain 19411 chr9 141213431 + 29555127 29555348 AluY 311 + 85 307 128916 47 0 1 174 chain 211852 chr9 141213431 + 29583206 29585826 L1PA7 6471 + 3832 6467 18369 176 2 1 89 0 1 388 0 1 50 0 2 34 1 0 4 0 1 49 0 1 448 22 0 10 0 22 345 4 5 143 0 4 20 0 5 666 15 16 154 chain 29171 chr9 141213431 + 29624704 29625012 AluYa5 310 - 3 310 88191 181 1 0 126 chain 3431 chr9 141213431 + 29641541 29641593 L1MD1 2063 + 375 421 216546 6 6 0 40 chain 5404 chr9 141213431 + 29648795 29648859 THE1C 375 + 3 67 190954 64 chain 4304 chr9 141213431 + 29649890 29649969 L1MB1 2102 + 742 822 203161 33 14 15 32 chain 134127 chr9 141213431 + 29656372 29658119 HERV17-int 4347 - 466 4334 27177 34 1 0 64 1 5 45 1 1673 353 0 2 227 3 0 9 2 1 30 0 1 19 13 5 54 0 2 8 0 8 14 0 10 42 1 3 270 0 4 222 2 1 5 0 435 196 1 0 27 2 0 33 1 0 52 1 0 14 chain 7597 chr9 141213431 + 29682562 29682646 L1PA5 6144 + 5917 6001 173561 84 chain 12629 chr9 141213431 + 29682647 29682788 L1PA5 6144 + 6003 6144 149731 141 chain 216209 chr9 141213431 + 29721463 29723952 L1PA5 6144 - 3 2500 18104 152 1 0 257 0 1 249 0 3 176 5 9 453 11 6 355 0 2 133 0 4 697 chain 59120 chr9 141213431 + 29737121 29738148 L1PA8 5853 - 6 798 53318 63 1 2 21 8 7 10 1 0 52 1 0 13 4 2 69 2 0 44 6 5 319 237 11 142 5 3 29 chain 188649 chr9 141213431 + 29764925 29767717 L1PB1 5432 + 2613 5404 20180 7 0 1 21 6 8 16 1 2 61 7 5 7 0 2 51 6 8 23 0 1 244 1 0 517 12 13 127 4 0 198 1 0 27 10 11 147 0 3 67 47 48 257 14 13 120 1 5 24 0 17 415 0 4 20 17 15 20 1 0 9 1 0 11 22 16 46 6 5 12 1 0 44 41 28 18 24 19 21 4 3 21 1 0 13 chain 123951 chr9 141213431 + 29776940 29778557 HERV17-int 4347 - 2279 4332 29714 66 1 0 387 5 9 122 10 35 5 0 3 11 0 6 7 36 0 35 1 0 34 0 1 32 1 7 58 2 0 65 0 4 175 0 4 229 4 438 40 6 0 156 1 0 27 2 0 34 1 0 51 2 1 11 chain 3648 chr9 141213431 + 29779008 29779047 L1PA6 6164 - 5 44 212822 39 chain 25244 chr9 141213431 + 29795686 29795995 L1PA7 6471 - 6 308 103508 185 0 1 66 1 0 43 7 0 7 chain 27454 chr9 141213431 + 29834750 29835045 L1PA5 6144 - 7 302 94800 295 chain 70912 chr9 141213431 + 29869529 29870426 L1PA7 6471 - 4 899 47956 69 1 2 77 7 6 277 4 0 333 11 10 76 0 3 42 chain 46712 chr9 141213431 + 29870434 29870979 L1PA7 6471 + 5034 5579 61447 545 chain 466010 chr9 141213431 + 29888616 29894703 L1PA8A 6298 + 209 6291 8189 12 1 0 8 1 0 6 1 0 8 1 0 13 17 11 40 2 1 21 9 1 78 2 0 14 1 0 10 1 0 3 1 0 67 2 0 10 1 0 325 0 1 273 18 0 11 1 16 316 0 3 170 5 0 383 0 1 16 1 0 10 8 0 244 6 7 79 0 2 18 0 4 43 1 0 58 5 3 5 0 1 15 10 11 82 0 7 8 4 8 133 0 3 133 0 2 172 0 2 338 0 1 23 1 0 4 0 7 248 10 0 179 0 2 110 10 9 77 0 1 4 0 2 113 7 14 146 0 1 151 1 2 190 5 6 120 2 0 502 6 7 150 1 0 521 0 1 285 chain 28365 chr9 141213431 + 29902379 29902775 LTR7 482 - 13 482 91711 36 13 14 34 1 3 85 0 31 41 0 1 109 8 46 69 chain 296651 chr9 141213431 + 29933568 29937831 L1PB1 5432 - 28 4584 13608 12 2 1 21 1 0 24 2 0 17 5 2 10 39 29 7 1 0 36 19 14 10 2 1 53 37 29 24 9 11 100 1 2 63 17 23 60 0 3 16 35 34 4 0 1 89 1 0 78 0 1 4 5 1 109 2 7 399 0 1 81 35 1 282 6 8 133 0 1 4 1 0 124 6 313 108 6 7 87 19 0 104 0 1 301 4 10 49 14 0 46 0 4 59 10 18 52 0 41 140 18 23 26 0 1 157 0 1 191 26 28 206 0 6 9 0 6 71 15 0 178 0 2 381 chain 151984 chr9 141213431 + 29997297 29998955 L1PA3long 6157 + 4499 6157 24338 1658 chain 31995 chr9 141213431 + 30000039 30000471 MER4A1 472 - 0 463 80875 316 0 1 40 0 12 17 25 43 34 chain 83802 chr9 141213431 + 30001117 30002095 L1PA6 6164 - 9 992 41987 256 0 10 301 3 0 280 1 0 40 1 0 96 chain 30327 chr9 141213431 + 30014694 30015040 L1PA5 6144 - 12 354 83849 53 4 0 289 chain 55751 chr9 141213431 + 30020574 30021277 L1PA8 5853 - 0 697 55272 93 2 1 18 2 1 58 1 0 74 2 0 44 1 0 408 chain 25899 chr9 141213431 + 30060550 30060852 AluYk4 311 - 15 311 100445 10 6 0 286 chain 26319 chr9 141213431 + 30067299 30067581 AluYa5 310 + 28 308 98744 104 2 0 176 chain 22846 chr9 141213431 + 30070020 30070319 AluSp 311 + 11 305 116365 38 13 8 248 chain 58390 chr9 141213431 + 30076343 30077149 MER4E1 777 + 0 777 53755 26 2 0 303 0 19 85 0 1 106 46 0 47 1 0 190 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20141 chr9 141213431 + 30207265 30207636 THE1B 368 - 0 368 126706 56 7 6 65 61 56 7 0 2 50 20 21 105 chain 26842 chr9 141213431 + 30215528 30215828 L1PA5 6144 + 5839 6139 96833 300 chain 30091 chr9 141213431 + 30218638 30218990 L1PA7 6471 - 32 383 84515 130 1 0 221 chain 26302 chr9 141213431 + 30218990 30219346 L1P2 5180 + 2097 2446 98821 106 3 5 111 9 0 127 chain 40934 chr9 141213431 + 30275276 30275800 L1P1 4361 - 20 557 67991 12 2 1 23 1 0 136 14 28 13 1 2 322 chain 5734 chr9 141213431 + 30277392 30277476 MER2 342 - 81 172 187801 26 3 10 55 chain 10371 chr9 141213431 + 30287739 30287856 L1PA2 6032 + 5913 6030 158824 117 chain 28755 chr9 141213431 + 30292122 30292477 THE1A 353 - 0 353 90090 75 1 0 43 2 1 4 0 1 119 1 0 110 chain 6358 chr9 141213431 + 30299733 30300019 LTR12C 1709 + 932 1017 182325 41 201 0 44 chain 2092 chr9 141213431 + 30299953 30299975 LTR12C 1709 + 873 895 237727 22 chain 55872 chr9 141213431 + 30338615 30339294 L1PA7 6471 - 1943 2627 55196 214 0 3 75 0 1 226 1 0 84 0 2 79 chain 152638 chr9 141213431 + 30339310 30341250 L1PA7 6471 + 4538 6461 24275 43 0 1 96 0 2 275 1 0 4 11 16 16 38 29 74 0 1 529 2 0 74 0 2 138 3 6 328 20 0 83 0 1 205 chain 14861 chr9 141213431 + 30341617 30341803 L1PA7 6471 - 6 192 141749 186 chain 9749 chr9 141213431 + 30341803 30341915 L1PA7 6471 + 5503 5615 161847 112 chain 7482 chr9 141213431 + 30341916 30342004 L1PA7 6471 + 5615 5703 174254 88 chain 45293 chr9 141213431 + 30342004 30342551 L1PA7 6471 + 5707 6262 62725 134 1 9 412 chain 9969 chr9 141213431 + 30344344 30344460 MER9a2 513 - 385 513 160735 84 0 12 32 chain 81849 chr9 141213431 + 30384614 30385716 L1PA8 5853 - 8 1082 42821 85 1 0 19 3 2 51 1 0 6 1 0 74 2 0 44 1 0 107 0 1 27 0 1 142 46 15 259 1 3 226 0 6 6 chain 11015 chr9 141213431 + 30419225 30419353 L1PA7 6471 + 6342 6470 156142 128 chain 192397 chr9 141213431 + 30427509 30429639 L1PA3long 6157 - 0 2128 19821 990 3 0 53 0 1 1084 chain 17259 chr9 141213431 + 30440293 30440503 AluYk4 311 - 6 211 134897 10 5 0 195 chain 282821 chr9 141213431 + 30440503 30443681 L1PA4 6152 - 22 3209 14484 822 0 4 1576 0 1 38 1 0 430 0 5 311 chain 3105 chr9 141213431 + 30454642 30454681 MER92A 404 + 328 367 222858 39 chain 47566 chr9 141213431 + 30456195 30456718 L1PA3long 6157 - 346 869 60794 523 chain 29315 chr9 141213431 + 30456718 30457035 L1PA3long 6157 + 5840 6157 87472 317 chain 28913 chr9 141213431 + 30491292 30491595 AluYa5 310 - 7 310 89403 303 chain 55320 chr9 141213431 + 30492851 30493463 L1PA4 6152 + 5534 6146 55510 612 chain 65499 chr9 141213431 + 30501035 30501784 L1PA4 6152 - 14 767 50341 4 1 0 714 3 8 27 chain 33900 chr9 141213431 + 30509903 30510281 L1PA2 6032 + 5653 6032 77769 42 0 1 336 chain 532255 chr9 141213431 + 30539475 30545463 L1PA3long 6157 + 0 6156 3933 141 15 16 137 0 13 331 0 20 123 0 128 1078 6 7 117 0 3 1069 0 1 708 1 0 4 0 2 2258 chain 4637 chr9 141213431 + 30555139 30555220 MLT1A0 366 + 284 366 199236 32 11 12 38 chain 264646 chr9 141213431 + 30570083 30573451 L1PA8 5853 + 2480 5847 15458 75 0 8 153 5 0 160 2 1 4 0 1 102 23 10 34 0 1 180 5 7 36 7 6 247 1 2 115 1 0 1250 6 7 127 0 1 8 0 1 70 0 1 4 1 0 137 0 1 335 1 0 46 2 0 69 1 0 63 1 0 18 2 1 27 3 12 47 chain 65823 chr9 141213431 + 30584322 30585241 L1PA10 4194 + 3221 4136 50180 103 6 4 139 17 20 49 1 3 7 2 0 220 1 0 316 1 0 35 3 0 19 chain 122189 chr9 141213431 + 30592683 30594045 L1PA3long 6157 - 4 1367 30184 142 5 6 1215 chain 295995 chr9 141213431 + 30594045 30597320 L1PA3long 6157 + 1515 4790 13649 3275 chain 18292 chr9 141213431 + 30604472 30604815 THE1B 368 + 0 368 132097 44 32 47 40 10 8 25 1 0 34 32 45 125 chain 21118 chr9 141213431 + 30610146 30610396 L1PA7 6471 + 6220 6470 123495 250 chain 7923 chr9 141213431 + 30616122 30616212 THE1D 372 + 248 338 171504 90 chain 24760 chr9 141213431 + 30619721 30620025 AluSg7 307 - 3 303 106109 8 5 0 169 0 1 122 chain 25333 chr9 141213431 + 30627107 30627404 AluY 311 + 5 302 103051 297 chain 102073 chr9 141213431 + 30636766 30637885 L1PA3long 6157 - 2 1121 36245 1119 chain 68041 chr9 141213431 + 30637885 30638629 L1PA3long 6157 + 4321 5065 49230 744 chain 64781 chr9 141213431 + 30646338 30647359 MER11B 1079 - 0 932 50667 29 1 0 132 1 2 27 12 15 102 4 6 18 17 7 101 0 1 96 0 1 5 2 1 12 0 2 87 11 10 200 5 10 41 92 1 26 chain 3697 chr9 141213431 + 30662161 30662447 MLT2B1 522 + 82 380 211985 40 223 235 23 chain 102993 chr9 141213431 + 30679940 30681096 L1PA5 6144 - 1133 2290 35989 1131 1 2 24 chain 97031 chr9 141213431 + 30681096 30682230 L1PA5 6144 + 5007 6143 37460 268 8 7 140 0 1 566 0 1 100 0 1 52 chain 16519 chr9 141213431 + 30686130 30686327 L1PA8 5853 - 555 752 136860 197 chain 21296 chr9 141213431 + 30686327 30686904 L1PA8 5853 + 5297 5560 122876 93 315 0 83 0 1 86 chain 3825 chr9 141213431 + 30686905 30686954 L1PA8 5853 + 5560 5609 209995 49 chain 6027 chr9 141213431 + 30686956 30687027 L1PA8 5853 + 5609 5680 185007 71 chain 2166 chr9 141213431 + 30687058 30687088 L1PA8 5853 + 5710 5740 236980 30 chain 7550 chr9 141213431 + 30687113 30687203 L1PA8 5853 + 5763 5853 173870 90 chain 10210 chr9 141213431 + 30707434 30707739 MER9a3 513 - 0 324 72930 78 1 2 128 0 1 29 0 17 69 chain 41384 chr9 141213431 + 30707757 30708215 L1PA2 6032 - 0 459 67429 453 0 1 5 chain 13972 chr9 141213431 + 30708215 30708366 L1PA2 6032 + 5404 5555 144676 151 chain 6227 chr9 141213431 + 30708366 30708552 MER9a3 513 - 324 513 72930 77 0 1 91 0 2 18 chain 23809 chr9 141213431 + 30732816 30733086 AluSc 308 - 38 308 111420 270 chain 10806 chr9 141213431 + 30766457 30766634 MSTA 426 + 26 212 156958 82 2 0 5 24 37 56 2 0 6 chain 6023 chr9 141213431 + 30771104 30771183 MADE1 96 + 0 95 185035 46 0 16 33 chain 549589 chr9 141213431 + 30785050 30791205 L1PA3long 6157 - 0 6157 1506 2986 2 1 776 0 4 950 2 1 1439 chain 17798 chr9 141213431 + 30818318 30818553 L1PA8 5853 + 5622 5853 133416 57 1 0 10 1 0 51 2 1 19 1 0 93 chain 20188 chr9 141213431 + 30820101 30820378 THE1A 353 + 0 341 126569 73 0 65 33 1 0 6 0 1 9 1 4 6 3 0 5 1 0 139 chain 118502 chr9 141213431 + 30820390 30821927 THE1A-int 1579 + 0 1573 31620 169 11 11 110 12 7 69 6 5 69 0 2 386 2 1 461 0 41 242 chain 182699 chr9 141213431 + 30852246 30854951 MER61-int 3695 + 0 3191 20716 24 25 10 12 1 0 38 14 10 75 1 0 29 39 0 74 1 0 134 18 7 16 0 572 250 0 1 47 29 3 56 5 6 186 0 1 72 0 5 162 1 0 336 0 1 4 0 1 148 0 1 45 22 27 262 15 14 61 13 16 57 6 5 52 13 14 23 39 35 257 13 12 30 chain 101394 chr9 141213431 + 30856879 30858013 L1PA5 6144 - 4 1141 36423 466 0 2 629 0 1 39 chain 31983 chr9 141213431 + 30858013 30858385 L1P1 4361 + 3859 4231 80305 200 0 1 90 1 0 81 chain 102978 chr9 141213431 + 30951221 30952352 L1PA3long 6157 - 0 1137 35995 641 0 6 490 chain 130180 chr9 141213431 + 30956175 30957617 L1PA3long 6157 + 4713 6157 28053 767 0 2 675 chain 6356 chr9 141213431 + 30997786 30997867 L1MA10 1535 - 192 273 182337 81 chain 93289 chr9 141213431 + 30998947 31000000 L1PA4 6152 - 14 1067 38568 1053 chain 216931 chr9 141213431 + 31000757 31003430 L1P1 4361 - 40 4355 18058 12 9 8 63 5 4 84 1 0 319 66 40 1012 29 1667 386 1 34 686 chain 446351 chr9 141213431 + 31005060 31010930 L1PA8 5853 + 50 5853 8866 22 13 10 10 37 16 110 2 1 19 2 3 61 21 9 322 6 0 12 0 6 132 0 3 397 6 1 172 0 1 485 2 0 182 16 1 54 6 1 191 1 5 414 0 1 238 0 1 55 11 12 269 4 6 123 1 0 398 0 2 150 0 1 71 0 13 178 1 0 5 1 2 659 41 13 46 11 12 143 1 2 474 1 0 46 9 7 56 8 7 60 2 1 19 1 0 93 chain 26277 chr9 141213431 + 31012096 31012469 L1PB1 5432 - 506 920 98912 151 0 41 89 0 1 5 10 11 56 9 7 53 chain 79874 chr9 141213431 + 31051469 31052366 L1PA4 6152 - 0 900 43650 332 0 3 565 chain 120205 chr9 141213431 + 31052379 31053758 L1P1 4361 + 2966 4341 30979 1125 1 0 57 1 0 157 1 0 23 2 1 12 chain 545486 chr9 141213431 + 31056112 31062220 L1PA3long 6157 - 0 6157 2015 134 0 1 1132 0 1 170 0 42 57 0 2 224 0 1 706 0 1 3066 2 6 609 3 0 5 chain 16584 chr9 141213431 + 31074202 31074547 L1PB1 5432 + 5108 5422 136704 6 1 0 24 1 0 8 1 0 12 5 1 9 2 0 52 2 1 44 56 43 19 7 4 15 2 0 24 1 0 21 1 0 13 1 0 18 chain 22812 chr9 141213431 + 31087586 31087945 L1PA13 3608 - 120 466 116523 21 1 0 18 3 1 5 2 0 49 4 0 21 1 0 4 0 1 33 1 0 62 2 0 106 9 8 17 chain 39481 chr9 141213431 + 31101273 31101782 L1PA7 6471 - 765 1275 70046 85 2 1 51 0 1 330 1 2 40 chain 53560 chr9 141213431 + 31101782 31102456 L1PA7 6471 + 5755 6454 56638 76 7 15 143 1 4 229 0 13 166 0 1 52 chain 23996 chr9 141213431 + 31120426 31120788 THE1A 353 - 0 353 110353 49 28 21 25 1 0 148 8 7 103 chain 115020 chr9 141213431 + 31131418 31132989 L1PB1 5432 - 1553 3136 32785 75 4 5 67 9 5 32 17 17 670 1 0 54 49 59 61 3 0 151 1 0 33 0 1 75 0 16 8 7 8 23 0 1 8 0 2 8 11 0 204 chain 97920 chr9 141213431 + 31132989 31134652 L1PB1 5432 + 3911 5413 37284 496 0 1 4 1 0 71 7 12 94 7 21 12 1 2 75 1 0 112 4 5 47 0 1 152 0 4 23 10 10 28 0 4 18 1 2 9 164 0 24 1 0 9 16 11 11 2 0 51 2 1 10 7 6 44 1 0 6 8 0 7 3 4 10 1 0 19 10 7 12 2 0 16 8 7 22 6 5 8 1 0 9 chain 96260 chr9 141213431 + 31142847 31144037 L1PA7 6471 + 5251 6454 37743 53 0 1 113 3 14 427 0 3 270 1 0 183 1 0 78 7 5 5 0 2 49 chain 534368 chr9 141213431 + 31154955 31161083 L1PA4 6152 - 6 6140 3668 1069 1 0 895 0 5 306 0 1 187 0 1 1096 0 2 152 0 3 63 0 1 5 1 0 176 0 2 69 27 20 244 0 1 1463 1 0 373 chain 25693 chr9 141213431 + 31180696 31180990 L1PA5 6144 - 1074 1370 101312 69 0 2 225 chain 95812 chr9 141213431 + 31180996 31182074 L1PA5 6144 + 5066 6140 37872 928 1 2 135 5 0 9 chain 3112 chr9 141213431 + 31207945 31208069 MLT1D 503 - 38 162 222698 36 70 70 18 chain 64129 chr9 141213431 + 31215808 31216862 L1MA1 4479 - 339 1387 50953 15 0 31 16 1 0 126 5 0 4 1 0 79 0 1 4 27 23 12 1 0 59 0 1 14 1 0 16 40 37 82 0 1 101 1 0 129 3 0 52 8 8 18 15 10 38 22 15 70 4 0 15 6 2 69 chain 18014 chr9 141213431 + 31224748 31224954 L1PA5 6144 - 0 206 132815 206 chain 373121 chr9 141213431 + 31226320 31230634 L1P1 4361 - 33 4357 10986 23 1 0 154 1 0 482 4 0 413 0 2 3119 6 20 111 chain 20635 chr9 141213431 + 31272113 31272347 AluY 311 + 68 304 125170 63 0 2 171 chain 43095 chr9 141213431 + 31272874 31273405 LTR10F 562 + 0 562 65297 35 0 8 185 0 3 37 0 17 128 0 3 146 chain 3493 chr9 141213431 + 31275199 31275254 LTR59 565 - 12 68 215457 27 4 5 24 chain 37412 chr9 141213431 + 31287340 31287783 L1PA7 6471 + 6012 6455 72943 443 chain 556478 chr9 141213431 + 31294063 31300094 L1PA2 6032 + 0 6031 673 722 0 1 2881 1 0 2427 chain 3535 chr9 141213431 + 31312717 31312762 MADE1 96 + 50 96 214781 19 0 1 26 chain 36336 chr9 141213431 + 31326304 31326752 LTR7 482 + 0 482 74457 230 0 31 158 11 14 49 chain 279124 chr9 141213431 + 31326754 31330439 HERVH-int 3825 + 0 3822 14685 241 0 1 38 0 2 51 1 0 31 15 16 93 18 19 41 1 0 44 1 0 27 53 25 20 42 0 8 2 1 38 2 1 80 1 5 56 0 3 395 24 9 186 9 0 27 0 2 10 1 0 137 1 0 172 0 1 220 0 4 52 40 45 95 1 0 499 3 7 418 0 210 49 6 7 436 chain 5109 chr9 141213431 + 31327356 31327409 HERVH-int 3825 + 488 541 187333 53 chain 35650 chr9 141213431 + 31334247 31334695 LTR7 482 + 0 482 75336 230 0 31 85 0 1 72 12 14 49 chain 30063 chr9 141213431 + 31353431 31353745 AluYb8 318 - 4 318 84621 314 chain 25025 chr9 141213431 + 31353938 31354268 L1PA7 6471 + 6138 6468 104660 175 2 0 7 8 10 138 chain 10953 chr9 141213431 + 31364538 31364675 L1PA7 6471 - 6 139 156389 6 4 0 127 chain 12176 chr9 141213431 + 31368569 31368719 L1PA4 6152 + 6002 6152 151510 150 chain 143743 chr9 141213431 + 31373514 31375488 L1PA5 6144 - 3 1665 25528 92 2 0 53 8 2 182 1 2 519 1 0 283 305 0 43 5 6 480 chain 26691 chr9 141213431 + 31374667 31374960 AluYd8 298 - 4 297 97348 293 chain 124779 chr9 141213431 + 31375488 31376897 L1PA5 6144 + 3072 4494 29407 92 0 11 771 0 1 230 0 1 316 chain 34935 chr9 141213431 + 31382705 31383138 L1PA7 6471 - 5 433 76286 7 4 0 177 1 0 244 chain 63606 chr9 141213431 + 31409623 31410433 L1PA7 6471 - 1470 2304 51184 52 1 0 142 3 5 126 0 10 126 0 2 201 0 1 32 1 0 38 0 11 88 chain 116154 chr9 141213431 + 31410434 31411887 L1PA7 6471 + 5003 6470 32394 169 0 4 186 0 1 4 2 0 18 1 7 4 1 0 35 0 1 268 2 3 192 1 3 240 0 1 235 5 6 90 chain 29301 chr9 141213431 + 31440336 31440739 LTR7 482 + 0 475 87561 69 8 46 109 10 11 11 1 32 29 0 2 166 chain 37087 chr9 141213431 + 31443708 31444185 LTR2B 499 + 5 499 73403 7 0 1 61 3 0 37 3 22 175 0 1 8 1 0 182 chain 27268 chr9 141213431 + 31444614 31444939 L1PA7 6471 - 10 331 95377 195 4 0 126 chain 42352 chr9 141213431 + 31469803 31470345 MER41A 554 - 0 536 66214 144 6 0 392 chain 510001 chr9 141213431 + 31513084 31519720 L1PA7 6471 - 10 6370 6164 324 0 1 517 333 22 264 6 5 212 2 0 13 0 1 147 1 0 346 0 2 19 0 1 305 0 11 391 0 1 924 3 4 316 28 11 400 4 15 305 1 0 634 0 1 12 0 1 25 1 5 311 19 24 69 3 4 169 3 2 8 0 1 121 1 2 41 0 12 50 1 5 5 3 0 123 6 7 101 5 6 64 chain 6995 chr9 141213431 + 31525610 31525939 L1M3 994 + 54 367 177497 7 1 0 14 1 0 25 132 118 18 7 4 40 55 58 29 chain 118864 chr9 141213431 + 31551276 31552576 L1PA3long 6157 - 0 1302 31468 5 0 2 1295 chain 96683 chr9 141213431 + 31552576 31553653 L1P1 4361 + 3100 4177 37531 78 0 1 972 1 0 26 chain 8894 chr9 141213431 + 31557419 31557579 MLT2B1 522 + 42 184 166166 53 14 0 8 5 0 36 6 7 38 chain 54983 chr9 141213431 + 31571675 31572407 L1PA7 6471 - 2 765 55716 10 2 0 92 0 3 5 5 23 50 7 10 49 8 9 265 0 7 158 3 4 78 chain 76514 chr9 141213431 + 31632876 31633844 LTR5_Hs 974 - 0 974 45205 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 15256 chr9 141213431 + 31644262 31644454 L1PA7 6471 - 1 194 140613 12 1 0 144 0 2 35 chain 56664 chr9 141213431 + 31657012 31657963 L1PA11 4918 - 289 1221 54743 18 178 145 58 8 9 4 1 0 65 6 5 29 0 2 21 0 4 85 0 9 48 3 0 5 0 3 422 chain 88793 chr9 141213431 + 31684537 31685646 L1PA7 6471 + 5366 6470 40085 256 2 0 144 1 0 18 2 3 404 6 3 130 2 1 27 3 4 114 chain 28478 chr9 141213431 + 31686892 31687305 MLT2A1 477 - 82 477 91277 11 21 0 61 1 0 22 11 10 118 2 6 24 0 1 142 chain 35470 chr9 141213431 + 31708368 31708751 L1PA4 6152 - 9 395 75592 323 0 3 60 chain 54491 chr9 141213431 + 31708751 31709354 L1PA4 6152 + 5151 5754 56032 603 chain 21034 chr9 141213431 + 31724345 31724698 THE1B 368 - 0 360 123793 115 71 76 59 9 11 99 chain 20619 chr9 141213431 + 31748119 31748371 L1PA4 6152 + 5894 6152 125226 152 4 10 96 chain 135501 chr9 141213431 + 31749842 31751346 L1PA3long 6157 - 0 1511 26925 149 0 2 698 0 4 172 0 1 485 chain 8453 chr9 141213431 + 31765524 31765688 MSTA 426 - 240 426 168547 38 16 40 28 18 17 8 1 0 55 chain 85852 chr9 141213431 + 31770534 31771637 MER11A 1151 + 0 1136 41215 108 0 2 67 8 0 22 2 0 31 1 0 60 0 2 246 0 1 21 1 0 110 9 12 137 6 40 57 1 2 18 9 11 24 0 1 85 1 0 79 chain 91169 chr9 141213431 + 31772835 31778505 HERVK11-int 2540 + 686 2303 39242 51 5 0 14 7 0 21 2 0 21 77 41 37 2 0 5 1 4 10 3987 95 16 23 8 15 21 20 21 2 0 64 1 0 33 18 17 9 3 0 21 28 17 16 23 12 36 21 1 303 0 3 134 5 0 104 1 0 77 1 0 111 4 0 77 1 0 4 0 5 129 86 43 22 chain 4553 chr9 141213431 + 31782713 31782767 L1PB4 2604 + 2498 2552 200184 54 chain 6423 chr9 141213431 + 31807542 31807615 LTR1 825 - 0 73 181836 73 chain 9765 chr9 141213431 + 31815601 31815712 L1PA7 6471 + 6350 6461 161770 111 chain 10330 chr9 141213431 + 31847730 31847861 MER47A 366 - 165 296 158989 131 chain 101407 chr9 141213431 + 31864739 31865915 L1PA5 6144 - 0 1172 36417 11 3 1 241 1 0 108 0 1 155 0 1 339 1 0 310 2 0 5 chain 114474 chr9 141213431 + 31876079 31877789 L1PA11 4918 - 290 2018 32952 17 134 124 13 2 0 50 0 10 7 2 0 15 1 0 23 8 8 33 5 0 135 1 0 132 0 1 103 6 8 122 2 0 60 0 15 176 1 0 38 19 21 22 0 1 153 1 2 142 0 1 6 8 15 49 0 1 108 8 9 108 chain 10557 chr9 141213431 + 31880388 31880513 L1PA6 6164 - 2 125 158016 8 2 0 115 chain 6242 chr9 141213431 + 31881928 31882029 L1MA3 4352 + 4187 4282 183231 48 4 0 24 3 1 22 chain 529672 chr9 141213431 + 31883170 31889272 L1PA5 6144 - 9 6141 4225 507 0 1 326 0 4 1365 1 2 377 0 1 382 1 0 1018 1 2 438 0 1 772 1 3 77 0 6 718 1 15 117 chain 169611 chr9 141213431 + 31898407 31900453 L1PA7 6471 - 6 2047 22101 7 2 0 127 9 0 7 7 16 27 7 6 654 2 1 465 0 1 90 10 8 632 chain 12845 chr9 141213431 + 31903519 31903781 L1PB1 5432 - 15 257 148867 10 1 3 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 12 34 22 12 1 0 44 1 0 16 2 1 45 chain 32624 chr9 141213431 + 31908362 31908776 LTR3B 427 + 23 427 79808 277 3 0 32 9 3 13 1 0 79 chain 33316 chr9 141213431 + 31909223 31909650 LTR3B 427 + 0 420 78711 300 4 1 31 18 14 74 chain 12426 chr9 141213431 + 31930245 31930397 L1PA7 6471 - 1 152 150545 120 1 0 31 chain 549231 chr9 141213431 + 31932201 31938373 L1PA3long 6157 - 1 6151 1546 145 1 8 215 5 2 240 0 1 662 25 4 3310 0 1 1151 7 0 411 chain 118929 chr9 141213431 + 31940628 31942158 THE1B-int 1605 + 37 1600 31443 228 3 5 33 1 0 55 3 7 35 0 1 31 0 25 381 18 19 413 0 1 329 chain 73866 chr9 141213431 + 31947660 31948525 L1PA5 6144 - 0 869 46580 95 2 0 52 2 0 53 1 0 456 4 7 16 0 6 184 chain 12304 chr9 141213431 + 31971019 31971151 L1PA3long 6157 - 0 132 151001 132 chain 509284 chr9 141213431 + 31989698 31995982 L1PA6 6164 + 3 6161 6219 564 1 0 687 1 0 64 0 1 34 0 1 927 1 2 50 0 1 57 0 1 5 0 4 365 0 1 242 0 1 159 1 3 17 0 1 119 0 1 7 0 2 109 127 0 95 0 1 85 9 13 55 0 1 549 2 0 86 31 1 6 3 0 486 7 12 120 1 0 374 0 4 41 0 4 193 0 3 604 chain 10172 chr9 141213431 + 31993108 31993230 L1PA6 6164 + 4809 4931 158226 122 chain 40834 chr9 141213431 + 31998620 31999105 L1PA6 6164 + 5679 6159 68125 380 5 0 100 chain 57201 chr9 141213431 + 31999359 32000000 L1PA4 6152 - 0 644 54403 286 0 3 355 chain 40985 chr9 141213431 + 32002456 32002914 L1PA3long 6157 - 0 460 67929 5 0 2 453 chain 5108 chr9 141213431 + 32002915 32002976 L1P1 4361 + 4268 4328 193990 37 1 0 23 chain 22128 chr9 141213431 + 32006489 32006751 L1PA7 6471 - 6 270 119670 223 0 2 39 chain 170168 chr9 141213431 + 32023319 32025693 L1PB1 5432 - 160 2530 22030 31 23 21 52 2 0 9 5 1 14 19 17 13 3 0 8 2 3 106 3 6 58 6 7 110 0 4 8 0 1 144 0 7 25 2 0 213 3 0 79 5 13 203 0 2 118 11 9 258 5 8 8 0 1 83 19 4 225 2 1 337 0 1 162 chain 33370 chr9 141213431 + 32030020 32030468 MLT2A1 477 - 0 477 78621 37 9 3 13 3 39 180 0 1 24 0 1 8 3 0 171 chain 51547 chr9 141213431 + 32037446 32038119 L1P3 4156 - 502 1183 57930 49 4 6 29 0 3 8 9 13 63 2 1 509 chain 20025 chr9 141213431 + 32038119 32038429 L1PA8 5853 + 5550 5853 127061 14 1 0 44 2 0 69 20 18 34 13 12 19 1 0 93 chain 322201 chr9 141213431 + 32049885 32053564 L1PA4 6152 - 0 3686 12514 12 1 4 596 0 1 324 10 0 585 0 1 277 0 4 217 0 1 191 0 1 771 0 2 52 0 3 516 0 1 127 chain 122529 chr9 141213431 + 32053564 32054947 L1PA4 6152 + 1108 2491 30119 332 1 0 708 0 1 342 chain 27861 chr9 141213431 + 32060471 32060774 AluYg6 310 - 12 310 93489 7 5 0 291 chain 23768 chr9 141213431 + 32074981 32075647 THE1B 368 - 2 356 111664 72 8 7 87 2 0 19 10 9 21 329 6 86 0 15 32 chain 15743 chr9 141213431 + 32086614 32086797 L1PA2 6032 + 5841 6031 139133 35 2 9 146 chain 422534 chr9 141213431 + 32098544 32103656 L1P2 5180 + 2 5178 9473 147 1 0 98 3 2 248 11 10 8 1 0 272 1 0 6 2 1 94 0 64 207 13 16 1528 0 3 460 0 2 15 2 0 1135 0 2 37 0 4 57 12 9 662 1 0 47 1 0 38 1 0 4 chain 35623 chr9 141213431 + 32122901 32123303 L1PA5 6144 - 1228 1630 75380 402 chain 104629 chr9 141213431 + 32123309 32124499 L1PA5 6144 + 4930 6141 35587 20 0 1 956 0 20 214 chain 282491 chr9 141213431 + 32129250 32133066 L1PA10 4194 + 245 3995 14504 5 1 0 22 2 0 15 1 0 7 57 31 10 2 0 21 9 7 18 8 0 12 18 11 44 0 1 35 2 0 16 0 1 596 3 4 55 1 0 67 11 7 28 1 6 6 8 0 429 0 2 66 28 7 4 0 1 120 2 0 170 1 2 327 0 2 161 0 5 63 0 1 33 6 5 286 0 3 418 1 3 72 11 5 136 0 1 109 1 0 4 0 1 224 0 2 63 chain 27089 chr9 141213431 + 32133166 32133461 AluYa5 310 - 0 293 95975 217 2 0 76 chain 38373 chr9 141213431 + 32144066 32144607 MLT2A2 560 + 0 560 71613 156 14 24 25 13 12 61 1 0 126 2 13 73 0 1 46 1 0 23 chain 47267 chr9 141213431 + 32144756 32145323 L1PA6 6164 - 15 587 60991 145 1 2 168 0 1 161 0 3 92 chain 104908 chr9 141213431 + 32145864 32147222 HERVL-int 5654 + 10 1384 35523 39 4 21 404 6 9 38 11 7 127 8 7 171 0 1 550 chain 6061 chr9 141213431 + 32148419 32149047 LTR13 1007 + 2 628 48972 71 2 0 8 0 3 7 0 6 7 6 0 24 4 0 253 4 5 242 chain 540275 chr9 141213431 + 32149073 32155111 L1PA3long 6157 + 0 6157 2778 152 0 1 127 0 1 86 0 1 408 0 128 1606 0 1 551 0 1 1519 19 1 701 0 4 869 chain 3619 chr9 141213431 + 32155154 32155529 LTR13 1007 + 629 1007 48972 54 25 28 296 chain 250265 chr9 141213431 + 32166031 32169189 HERVH-int 3825 - 0 3221 16232 225 0 2 153 36 37 26 1 2 112 0 1 163 0 19 983 11 16 65 1 15 199 8 12 15 0 1 201 5 0 17 6 0 91 1 0 37 11 1 70 1 2 465 5 32 28 5 0 56 1 0 49 8 28 46 29 25 13 1 0 14 chain 23367 chr9 141213431 + 32184383 32184656 AluYc 301 + 0 275 113829 113 2 4 158 chain 279514 chr9 141213431 + 32187868 32191009 L1PA5 6144 + 2997 6142 14661 161 1 0 18 3 0 20 0 1 1147 0 4 340 0 1 890 0 2 561 chain 6042 chr9 141213431 + 32210989 32211059 Tigger1 2417 + 855 925 184876 70 chain 541733 chr9 141213431 + 32211834 32217977 L1PA4 6152 - 6 6152 2554 620 0 1 829 0 1 1012 1 2 498 1 0 646 1 4 640 6 3 258 0 1 1631 chain 32564 chr9 141213431 + 32221274 32221716 MLT2A1 477 - 0 477 79918 43 7 0 8 3 41 62 2 1 149 0 4 26 0 1 142 chain 33409 chr9 141213431 + 32224653 32225035 L1PA4 6152 - 9 384 78546 131 7 0 244 chain 540882 chr9 141213431 + 32225045 32231056 L1PA3long 6157 - 1 6157 2681 849 1 2 345 0 1 1379 0 1 110 1 0 1123 0 14 1286 0 1 136 0 128 781 chain 38747 chr9 141213431 + 32280465 32281172 L1PA16 3655 - 36 700 71083 16 5 0 7 46 21 26 44 47 66 0 1 19 0 1 106 22 20 85 1 0 145 22 5 72 8 10 17 chain 387038 chr9 141213431 + 32285423 32291001 L1PB1 5432 - 52 5413 10547 34 24 19 19 21 12 16 1 0 43 1 0 14 6 4 49 3 1 9 18 13 13 1 0 22 224 10 32 12 20 31 6 5 47 9 0 67 0 1 273 1 2 263 0 1 192 0 4 157 11 1 14 1 0 228 28 34 9 3 0 164 3 4 686 2 5 369 5 0 107 27 46 64 0 3 732 9 7 110 40 30 150 0 1 338 0 1 64 10 10 217 19 22 48 10 9 281 0 2 121 5 17 54 14 13 27 chain 22075 chr9 141213431 + 32306745 32307077 LTR26 622 + 0 366 119904 161 19 25 40 8 10 61 1 28 14 2 1 26 chain 60443 chr9 141213431 + 32307755 32308437 L1P1 4361 + 3452 4189 52612 377 0 56 263 1 0 41 chain 10978 chr9 141213431 + 32308510 32308837 L1PB 1623 - 53 314 156279 17 101 71 28 2 1 7 1 0 97 47 13 27 chain 129078 chr9 141213431 + 32312558 32314858 L1MA2 4263 + 2118 4113 28296 65 321 21 84 24 11 9 0 3 98 21 22 87 2 1 15 6 15 95 5 3 120 0 1 7 3 0 456 3 4 22 1 0 152 1 2 41 0 4 16 0 11 101 10 6 72 1 0 58 24 25 45 19 16 30 13 14 13 1 0 93 11 9 57 1 2 30 22 15 35 1 0 9 chain 21415 chr9 141213431 + 32315159 32315384 AluYa5 310 + 84 309 122463 225 chain 21371 chr9 141213431 + 32342787 32343047 AluSc5 308 + 28 288 122615 260 chain 28612 chr9 141213431 + 32352866 32353236 MLT2A1 477 - 104 477 90687 29 1 0 21 1 0 150 1 5 25 0 1 142 chain 165070 chr9 141213431 + 32353236 32355204 HERVL-int 5654 - 0 1971 22645 211 0 1 7 0 1 11 1 6 179 6 0 13 1 0 161 0 2 100 0 6 184 6 0 1003 0 1 85 chain 87041 chr9 141213431 + 32392728 32393790 MER11B 1079 + 0 1063 40760 259 3 0 178 2 0 150 9 8 170 13 7 183 0 11 12 0 2 83 chain 394794 chr9 141213431 + 32443839 32448807 L1PA7 6471 - 7 6466 10286 44 0 13 332 4 0 397 0 3 46 0 1207 96 0 1 315 0 3 457 1 5 38 5 0 297 0 4 307 6 10 90 0 16 75 0 4 183 0 2 135 0 1 70 10 9 4 0 1 128 0 5 137 7 6 36 2 17 151 1 2 158 6 7 411 0 2 209 1 25 48 7 8 213 5 15 30 5 15 166 11 181 324 chain 26403 chr9 141213431 + 32455251 32455619 THE1D 372 - 0 372 98399 138 28 32 202 chain 26223 chr9 141213431 + 32459938 32460294 THE1A 353 + 0 353 99115 50 3 2 56 2 0 64 1 2 28 1 0 151 chain 518316 chr9 141213431 + 32508301 32514734 L1PA7 6471 + 3 6469 5347 12 5 4 266 19 17 28 3 0 5 5 8 57 1 3 353 1 2 258 5 6 188 0 4 26 0 4 126 10 17 184 5 6 182 1 0 275 0 1 291 0 1 304 2 1 257 8 12 199 0 4 114 1 2 283 1 0 41 3 0 5 5 9 48 0 1 134 0 1 52 7 19 504 1 0 702 1 0 90 8 0 26 3 5 477 1 4 280 2 1 66 9 10 481 2 0 10 chain 35903 chr9 141213431 + 32524869 32525343 LTR3A 482 + 0 482 75010 109 0 1 5 0 1 28 0 1 100 11 13 4 1 0 30 0 4 111 1 0 11 0 1 63 chain 6158 chr9 141213431 + 32569814 32570025 Tigger1 2417 + 2214 2417 183918 24 51 56 48 9 31 14 44 9 21 chain 4942 chr9 141213431 + 32577240 32577299 MER2 342 + 190 249 195775 59 chain 41366 chr9 141213431 + 32578882 32579419 MER41A 554 + 13 554 67450 21 5 8 201 1 2 127 1 0 149 1 2 31 chain 6499 chr9 141213431 + 32579442 32579519 MER21B 843 + 672 749 181253 77 chain 87688 chr9 141213431 + 32585694 32586839 Tigger1 2417 - 444 1592 40494 181 3 4 220 14 13 396 7 4 18 0 1 97 0 3 169 0 2 40 chain 114733 chr9 141213431 + 32597913 32599521 L1MA2 4263 + 2466 4114 32868 160 0 12 7 13 1 128 1 0 7 0 1 17 0 15 27 1 0 14 0 1 57 0 1 240 9 8 49 0 1 45 0 2 81 5 4 176 0 34 25 1 0 5 2 0 7 9 5 30 0 3 5 0 1 27 1 0 138 4 1 61 0 1 93 21 22 82 5 0 45 1 0 9 chain 27493 chr9 141213431 + 32603442 32603749 AluYf4 310 + 0 308 94671 244 0 1 63 chain 43532 chr9 141213431 + 32608079 32608599 L1PA8A 6298 - 8 529 64767 28 0 1 492 chain 11866 chr9 141213431 + 32643435 32643672 L1PA14 3548 - 74 300 152761 9 1 0 10 6 0 41 37 38 33 16 11 84 chain 234072 chr9 141213431 + 32652249 32655625 L1PA14 3548 + 132 3485 17084 10 1 0 6 3 0 69 1 0 20 2 1 30 2 0 31 2 0 312 0 1 370 6 12 190 0 3 317 7 15 63 9 9 156 20 13 139 0 2 8 0 1 49 0 6 7 1 0 4 13 12 19 47 47 114 0 1 173 1 2 109 7 8 62 16 15 150 1 0 107 1 0 39 1 8 93 9 7 10 3 1 45 2 0 7 2 0 105 2 0 5 28 16 5 1 0 31 0 3 49 1 0 112 1 0 12 5 1 29 10 8 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 115872 chr9 141213431 + 32659929 32661428 THE1B-int 1605 - 6 1578 32506 450 4 6 68 0 17 147 0 3 65 19 35 141 1 0 135 0 3 73 1 26 71 0 7 209 0 1 115 chain 5400 chr9 141213431 + 32667944 32668010 MER5A1 166 - 71 138 190984 12 0 1 54 chain 49716 chr9 141213431 + 32669549 32670244 L1PA8 5853 + 5169 5853 59219 310 0 3 82 1 0 44 2 0 46 30 17 8 1 0 61 2 1 19 1 0 16 1 2 40 7 11 24 chain 56080 chr9 141213431 + 32681184 32684114 L1MA1 4479 + 700 3317 17654 6 0 3 33 56 61 102 1 0 50 1 0 360 0 4 145 11 9 485 283 2 116 7 9 35 1 2 40 4 0 11 0 1 334 4 3 91 2 1 65 1 0 70 30 0 10 0 1 19 0 3 32 1 0 69 26 24 60 12 10 19 2 0 107 11 14 44 37 36 25 1 0 40 1 0 14 9 5 47 chain 506873 chr9 141213431 + 32684142 32690254 L1PA4 6152 + 10 6140 6409 61 1 2 69 10 24 45 8 7 588 4 21 19 23 6 107 25 0 189 5 5 17 22 13 120 0 1 47 11 28 75 0 4 248 0 1 613 0 1 184 0 2 1986 1 0 240 0 13 536 1 0 100 0 1 757 chain 18547 chr9 141213431 + 32691918 32692887 L1MA1 4479 + 3317 4190 17654 54 8 11 7 3 0 59 0 1 66 1 0 32 26 4 70 0 2 7 37 0 85 1 0 24 2 0 16 1 0 74 44 23 7 1 0 25 0 1 62 1 0 5 3 0 42 11 10 43 0 1 7 0 1 22 1 0 26 5 3 35 1 0 9 28 21 18 chain 73312 chr9 141213431 + 32693945 32694826 SVA_A 1864 + 498 1864 46878 155 2 37 37 2 0 111 38 489 225 0 1 311 chain 21325 chr9 141213431 + 32694990 32695228 L1PA4 6152 + 5914 6152 122771 238 chain 1451 chr9 141213431 + 32710036 32710360 MER41A 554 + 0 313 86442 185 30 19 109 chain 547719 chr9 141213431 + 32710377 32716386 L1PA2 6032 + 3 6032 1739 1118 1 0 1626 0 17 170 0 1 1855 0 1 1216 8 10 15 chain 1052 chr9 141213431 + 32716400 32716635 MER41A 554 + 313 554 86442 81 3 4 81 9 13 46 0 1 15 chain 550570 chr9 141213431 + 32729014 32735045 L1PA2 6032 + 0 6032 1367 257 1 0 1722 0 1 448 1 2 3602 chain 14636 chr9 141213431 + 32743873 32744038 MER11B 1079 - 914 1079 142472 165 chain 23191 chr9 141213431 + 32747700 32748135 L1PB1 5432 - 15 420 114721 4 1 0 9 1 0 13 1 0 21 1 0 23 3 1 14 8 5 19 15 14 13 1 0 44 1 0 16 2 1 53 2 0 8 2 0 3 2 0 9 1 0 31 9 0 63 2 1 5 0 1 29 1 0 5 chain 6176 chr9 141213431 + 32764298 32764378 MADE1 96 - 0 96 183769 45 1 17 34 chain 21719 chr9 141213431 + 32794963 32795310 THE1B 368 - 0 368 121318 103 0 1 13 44 50 29 1 0 103 10 25 44 chain 122540 chr9 141213431 + 32795315 32796861 THE1B-int 1605 - 5 1580 30210 290 1 2 20 0 1 6 5 4 70 4 5 745 0 25 69 4 6 332 chain 21602 chr9 141213431 + 32796888 32797228 THE1B 368 - 4 368 121761 121 34 42 16 7 9 4 1 0 117 0 15 40 chain 6098 chr9 141213431 + 32799660 32799861 L1MC4 1079 - 609 803 184425 42 102 97 13 2 0 42 chain 7681 chr9 141213431 + 32820258 32820348 HY1 111 + 10 100 173036 90 chain 15478 chr9 141213431 + 32824522 32824896 MER87 546 + 137 513 139970 47 1 0 4 7 0 8 3 11 71 120 122 66 14 14 33 chain 27550 chr9 141213431 + 32828458 32828767 AluYf4 310 + 0 309 94505 309 chain 10465 chr9 141213431 + 32839258 32839446 MER77B 728 + 495 636 158414 94 1 0 33 46 0 14 chain 43231 chr9 141213431 + 32894201 32894892 L1PA16 3655 + 2638 3350 65135 13 11 12 12 3 2 26 3 18 162 2 6 14 3 2 17 1 0 19 4 8 26 5 4 155 6 9 24 4 5 29 1 0 90 12 10 49 chain 49879 chr9 141213431 + 32906402 32907320 LTR12D 1347 - 0 944 59101 15 10 0 42 6 7 98 2 201 175 1 0 83 65 0 15 1 18 125 26 32 59 121 0 74 chain 1467 chr9 141213431 + 32906868 32906899 LTR12D 1347 - 823 854 175827 31 chain 4172 chr9 141213431 + 32907125 32907184 LTR12D 1347 - 720 779 166438 30 13 13 16 chain 4801 chr9 141213431 + 32907186 32907244 LTR12D 1347 - 812 870 197353 58 chain 8366 chr9 141213431 + 32907789 32907914 L1MB8 1703 + 1453 1586 169037 22 0 1 11 1 10 75 2 0 14 chain 36142 chr9 141213431 + 32909623 32910019 L1PA3long 6157 + 5760 6157 74718 109 0 1 287 chain 8644 chr9 141213431 + 32912705 32912840 MLT2B4 540 - 54 187 167519 91 24 22 20 chain 5230 chr9 141213431 + 32918389 32918541 L1MD3 1191 + 990 1145 192721 9 2 0 53 68 73 20 chain 11170 chr9 141213431 + 32920298 32920432 MER6A 605 + 405 538 155554 31 1 0 102 chain 2975 chr9 141213431 + 32925847 32925966 L1MC4a 1092 + 970 1091 225529 20 53 65 7 10 0 29 chain 29391 chr9 141213431 + 32942794 32943140 LTR14A 344 + 0 344 87115 10 1 0 54 1 0 280 chain 5019 chr9 141213431 + 32944653 32944712 MER2 342 + 156 215 194937 59 chain 3956 chr9 141213431 + 32944860 32944922 MER2B 336 + 211 272 208031 31 5 4 26 chain 19939 chr9 141213431 + 32944989 32945261 L1MA8 2339 - 803 1075 127333 63 6 5 37 0 1 166 chain 533185 chr9 141213431 + 32957811 32963954 L1PA6 6164 + 0 6157 3823 460 6 5 141 9 12 30 0 4 431 18 19 582 0 2 56 0 4 579 12 0 65 0 2 1137 0 1 225 0 5 1275 1 0 277 0 4 743 5 7 91 chain 9927 chr9 141213431 + 32976111 32976224 L1PA6 6164 + 5890 6003 160939 113 chain 12572 chr9 141213431 + 32976225 32976383 L1PA6 6164 + 6003 6162 149952 141 1 2 16 chain 9857 chr9 141213431 + 32982023 32982308 L1MC4a 1092 + 607 873 161308 56 35 34 11 9 0 22 2 0 30 3 0 19 41 36 14 11 15 18 3 0 11 chain 39697 chr9 141213431 + 32998407 32998877 L1PA7 6471 + 5999 6466 69757 398 9 6 63 chain 23330 chr9 141213431 + 32999691 32999979 AluY 311 + 0 305 114023 166 0 16 86 0 4 17 3 0 16 chain 26015 chr9 141213431 + 33000830 33001144 AluSp 311 - 0 311 99959 12 1 0 37 3 1 261 chain 5237 chr9 141213431 + 33042124 33042193 MADE1 96 + 3 96 192643 18 1 25 50 chain 4632 chr9 141213431 + 33069464 33069516 L1MA3 4352 + 3303 3355 199274 52 chain 25720 chr9 141213431 + 33076865 33077169 AluSp 311 + 1 308 101215 56 0 1 53 1 0 55 0 3 139 chain 24392 chr9 141213431 + 33083420 33083699 L1PA5 6144 + 5856 6135 108123 279 chain 522893 chr9 141213431 + 33085447 33091562 L1PA5 6144 + 0 6144 4879 65 0 1 69 37 51 163 2 1 719 23 23 77 9 0 127 0 1 147 0 4 491 1 0 374 7 5 926 0 3 525 0 1 744 0 13 1290 0 1 94 0 2 66 0 1 116 2 0 6 0 2 22 2 3 11 chain 10367 chr9 141213431 + 33101214 33101360 MER41B 635 - 488 635 158847 13 16 17 117 chain 11767 chr9 141213431 + 33175563 33175787 Tigger3a 397 + 60 297 153190 15 55 64 28 6 10 120 chain 45124 chr9 141213431 + 33183285 33183785 L1PA3long 6157 + 5650 6152 62906 337 0 2 163 chain 31564 chr9 141213431 + 33183791 33184178 L1PA7 6471 + 6086 6467 81537 153 3 2 65 0 1 8 2 0 146 4 0 6 chain 3002 chr9 141213431 + 33198952 33198984 MLT2B3 573 + 7 39 225009 32 chain 30435 chr9 141213431 + 33209941 33210759 MSTA 426 - 0 426 83567 156 418 22 92 14 18 138 chain 23304 chr9 141213431 + 33224946 33225234 AluSp 311 - 14 295 114179 262 0 1 4 8 0 14 chain 8286 chr9 141213431 + 33253855 33253955 FLAM_A 137 - 17 117 169480 100 chain 4304 chr9 141213431 + 33280287 33280335 MER41A 554 - 110 158 203172 48 chain 6911 chr9 141213431 + 33311305 33311400 MER50 708 - 115 205 178107 45 4 0 11 1 0 34 chain 121700 chr9 141213431 + 33339530 33341082 THE1B-int 1605 - 5 1589 30480 143 0 1 565 7 8 65 8 10 351 0 25 157 3 6 253 chain 21538 chr9 141213431 + 33341098 33341450 THE1B 368 - 0 361 122011 18 3 0 5 0 3 122 1 0 21 2 0 24 2 1 70 2 0 7 38 53 37 chain 40230 chr9 141213431 + 33347487 33348492 L1PB1 5432 + 4766 5430 68985 28 0 8 97 0 2 202 17 11 19 7 11 14 5 1 9 3 1 51 2 1 10 9 8 41 1 0 16 2 0 6 16 6 18 343 20 27 1 0 19 1 0 12 1 0 16 1 0 6 1 0 4 chain 10698 chr9 141213431 + 33362166 33362550 L1MA6 2487 + 2075 2401 157426 56 1 4 35 71 62 30 126 78 34 10 7 16 1 0 4 chain 25637 chr9 141213431 + 33377529 33377961 LTR7B 505 - 0 505 101552 25 2 0 5 0 1 20 14 13 79 1 0 25 27 115 27 36 11 45 0 3 21 0 10 105 chain 28527 chr9 141213431 + 33378846 33379146 AluYf4 310 - 10 310 91068 300 chain 25115 chr9 141213431 + 33382552 33382849 AluSc 308 - 10 307 104198 297 chain 6941 chr9 141213431 + 33409706 33409860 L1MB2 1706 - 310 466 177882 53 54 56 47 chain 21944 chr9 141213431 + 33419026 33419296 AluYc 301 + 1 288 120444 46 20 37 204 chain 91011 chr9 141213431 + 33423376 33424425 SVA_E 1901 + 897 1901 39289 26 1 0 4 8 5 163 1 0 12 41 0 155 0 1 638 chain 3070 chr9 141213431 + 33423591 33423632 SVA_E 1901 + 932 981 73438 26 4 0 9 0 12 2 chain 7928 chr9 141213431 + 33480334 33482448 LTR23 429 + 0 196 171457 65 1985 67 64 chain 3794 chr9 141213431 + 33485866 33485910 LTR76 689 - 419 463 210470 44 chain 23924 chr9 141213431 + 33507774 33508074 AluSc 308 + 0 300 110785 9 1 0 248 2 1 14 0 2 26 chain 75205 chr9 141213431 + 33514879 33515834 LTR5_Hs 974 - 14 974 45917 177 7 7 82 19 20 17 0 1 194 0 4 342 1 0 116 chain 7220 chr9 141213431 + 33530412 33530491 AluY 311 + 48 127 175936 79 chain 19032 chr9 141213431 + 33554675 33554987 LTR76 689 - 39 312 130025 10 35 0 40 4 3 77 6 0 39 0 6 78 1 0 9 2 0 11 chain 19327 chr9 141213431 + 33577615 33578059 MSTA-int 1630 + 23 1609 129159 95 4 10 102 43 1175 18 67 65 28 11 10 25 5 12 46 chain 5771 chr9 141213431 + 33579376 33579510 MST-int 1221 - 797 933 187434 36 45 49 30 2 0 21 chain 4051 chr9 141213431 + 33585524 33585576 MST-int 1221 - 797 849 206635 52 chain 3511 chr9 141213431 + 33597095 33597135 MSTA 426 + 57 97 215199 40 chain 4223 chr9 141213431 + 33597396 33597460 THE1-int 844 - 219 322 204264 21 5 44 38 chain 142964 chr9 141213431 + 33600248 33601835 SVA_D 2077 + 0 2075 25657 8 3 0 904 9 498 26 1 3 636 chain 52548 chr9 141213431 + 33628244 33628842 L1PA7 6471 + 5862 6461 57267 22 0 1 411 0 1 110 1 0 54 chain 20040 chr9 141213431 + 33632696 33632914 L1PA4 6152 + 5928 6146 127008 218 chain 74962 chr9 141213431 + 33642458 33643415 L1PA10 4194 + 3181 4161 46030 52 0 25 126 0 5 34 0 1 492 4 0 201 3 0 33 1 0 11 chain 10539 chr9 141213431 + 33659781 33659954 MER2 342 + 142 336 158097 120 30 51 23 chain 523461 chr9 141213431 + 33666029 33673481 L1PA6 6164 + 0 6161 4817 242 0 2 215 7 6 44 2 1 336 0 1 113 0 1 69 1311 0 285 0 1 149 0 4 122 0 3 1602 0 1 383 0 3 422 0 3 5 1 0 343 6 10 893 11 11 119 0 1 77 1 0 536 9 10 4 1 0 144 chain 114236 chr9 141213431 + 33667068 33668368 SVA_C 1631 + 0 1628 33015 13 7 0 7 0 1 648 0 77 58 0 256 263 0 1 304 chain 3775 chr9 141213431 + 33684268 33684308 MLT1D 503 + 89 129 210737 40 chain 33760 chr9 141213431 + 33708343 33708846 MER41A 554 + 13 540 78004 131 2 1 4 0 1 114 41 61 146 12 15 44 0 1 9 chain 240238 chr9 141213431 + 33725325 33728215 L1PA7 6471 + 3577 6468 16758 498 6 9 5 1 0 15 0 1 100 0 1 51 0 1 33 1 0 94 0 1 157 7 1 362 0 1 376 0 7 123 6 0 210 0 4 834 4 0 7 chain 27275 chr9 141213431 + 33736366 33736837 L1PB1 5432 + 4954 5397 95353 27 0 5 115 15 13 23 1 0 9 1 0 12 5 1 10 2 0 50 1 0 12 7 6 44 1 0 15 14 1 31 2 0 4 1 0 14 2 0 24 1 0 21 1 0 6 chain 35900 chr9 141213431 + 33743641 33744350 L1PB1 5432 + 4774 5410 75015 30 9 16 249 4 8 17 76 20 20 1 0 13 16 11 11 3 1 16 0 1 33 2 1 16 1 0 9 0 1 23 0 1 9 1 0 15 1 0 6 19 8 18 8 5 14 2 0 24 1 0 21 1 0 13 1 0 6 chain 50244 chr9 141213431 + 33744404 33745247 L1PB2 3958 + 1875 2590 58834 31 0 10 22 10 7 166 8 11 264 1 0 91 169 32 81 chain 4975 chr9 141213431 + 33745075 33745139 L1PB2 3958 + 2031 2095 195417 64 chain 10549 chr9 141213431 + 33749125 33749632 LTR12D 1347 - 347 910 158049 52 368 424 87 chain 29082 chr9 141213431 + 33785164 33785474 AluYa5 310 - 0 310 88626 310 chain 3435 chr9 141213431 + 33791052 33791090 L1MA5A 2387 + 2241 2279 216488 38 chain 18844 chr9 141213431 + 33811127 33811335 LTR12D 1347 + 1135 1343 130534 208 chain 24207 chr9 141213431 + 33829791 33830094 AluSp 311 - 7 311 109173 22 4 7 74 2 0 201 chain 4854 chr9 141213431 + 33830975 33831031 HY3 101 + 0 56 196734 56 chain 13298 chr9 141213431 + 33836197 33836379 Tigger3c 601 + 403 570 147092 101 15 0 66 chain 3025 chr9 141213431 + 33840007 33840054 MLT1A0 366 + 301 349 224480 30 2 3 15 chain 24114 chr9 141213431 + 33872512 33872799 AluSp 311 + 10 297 109673 287 chain 12612 chr9 141213431 + 33924813 33925008 MER30 238 + 0 238 149798 24 5 23 29 0 3 14 15 37 108 chain 14223 chr9 141213431 + 34008148 34008334 AluSp 311 + 119 300 143811 23 6 1 157 chain 3675 chr9 141213431 + 34018279 34018318 U7 62 - 22 61 212303 39 chain 134607 chr9 141213431 + 34038307 34039862 SVA_C 1631 + 60 1631 27095 592 37 0 285 2 52 14 0 1 33 2 0 379 0 8 190 4 0 17 chain 23808 chr9 141213431 + 34039883 34040172 AluSp 311 + 9 297 111426 49 0 1 82 2 0 156 chain 21880 chr9 141213431 + 34044114 34044377 AluY 311 + 1 261 120706 61 4 0 70 0 1 128 chain 24755 chr9 141213431 + 34046366 34046670 AluY 311 + 1 311 106137 46 1 7 257 chain 25682 chr9 141213431 + 34050714 34051001 AluY 311 + 2 300 101365 200 0 11 87 chain 19911 chr9 141213431 + 34054824 34055059 AluY 311 + 62 297 127433 15 0 1 203 1 0 16 chain 29907 chr9 141213431 + 34056358 34056749 MER75 514 + 111 503 85076 10 1 3 269 1 0 110 chain 25825 chr9 141213431 + 34062527 34062826 AluSp 311 + 0 296 100769 132 3 0 164 chain 24136 chr9 141213431 + 34092851 34093141 AluSp 311 - 20 306 109544 193 5 1 92 chain 10596 chr9 141213431 + 34094861 34095079 Tigger4b 360 - 96 318 157843 125 69 73 24 chain 155739 chr9 141213431 + 34136812 34138762 SVA_D 2077 + 16 2077 23886 11 7 1 541 40 0 118 0 40 34 0 40 110 0 86 28 0 51 153 0 1 27 0 1 4 10 37 89 14 13 22 78 0 642 10 0 12 chain 5276 chr9 141213431 + 34138020 34138098 SVA_D 2077 + 1120 1198 76915 78 chain 7186 chr9 141213431 + 34194815 34194905 HY4 93 - 3 93 176167 90 chain 4894 chr9 141213431 + 34197439 34197498 L1M3b 1512 - 763 821 196323 35 1 0 23 chain 22096 chr9 141213431 + 34200910 34201200 AluSp 311 - 15 299 119803 124 4 0 29 13 11 120 chain 189874 chr9 141213431 + 34212626 34215670 L1PB1 5432 + 2732 5424 20066 5 0 1 102 1 2 93 25 29 15 0 3 339 326 6 394 0 3 503 14 15 46 14 39 10 1 6 13 1 0 251 5 15 83 1 4 153 0 1 129 1 4 41 9 10 5 1 0 26 0 4 12 79 9 14 3 0 14 4 3 13 17 15 5 2 0 11 1 4 41 1 0 15 5 4 39 1 0 13 1 0 6 2 0 11 9 0 16 12 9 10 2 0 24 1 0 22 0 3 5 5 4 16 1 0 4 chain 3037 chr9 141213431 + 34217695 34217731 L1MA6 2487 - 110 146 224270 36 chain 21876 chr9 141213431 + 34235653 34236377 Tigger3b 1229 + 778 1150 120730 39 11 8 29 16 20 66 344 0 128 0 28 11 45 8 35 chain 23055 chr9 141213431 + 34243868 34244136 AluSg4 309 - 32 301 115377 240 0 1 28 chain 4825 chr9 141213431 + 34270864 34270920 7SK 245 - 189 245 197071 56 chain 4714 chr9 141213431 + 34282572 34282628 U2 167 - 36 92 198341 56 chain 22680 chr9 141213431 + 34297483 34297776 AluY 311 + 5 300 117161 126 1 2 140 8 9 18 chain 22593 chr9 141213431 + 34358695 34358993 AluSg7 307 - 2 299 117614 150 3 6 7 3 0 10 0 1 67 2 0 56 chain 13100 chr9 141213431 + 34365983 34366141 L1PA5 6144 - 1 154 147845 7 5 0 146 chain 3651 chr9 141213431 + 34366675 34366725 MIRb 242 - 1 63 212780 39 0 12 11 chain 123524 chr9 141213431 + 34367301 34368857 THE1B-int 1605 - 6 1605 29870 588 0 12 325 1 0 75 0 1 128 13 38 230 12 13 79 0 3 69 0 2 36 chain 7222 chr9 141213431 + 34414437 34414515 L1PA8 5853 + 5765 5843 175929 78 chain 22046 chr9 141213431 + 34430392 34430664 AluY 311 + 39 309 120034 86 2 3 175 3 0 6 chain 125029 chr9 141213431 + 34437740 34439261 LTR12C 1709 + 0 1709 29384 469 0 1 21 2 1 10 31 11 60 6 5 121 0 159 218 0 47 101 0 4 399 1 0 82 chain 3851 chr9 141213431 + 34468982 34469142 L1MEf 1413 + 645 807 209636 29 100 102 31 chain 144380 chr9 141213431 + 34481500 34483339 LTR12C 1709 - 0 1709 25416 444 0 2 35 0 4 107 3 1 5 1 0 171 119 0 103 1 0 523 1 0 4 0 1 116 14 0 113 1 2 78 chain 8836 chr9 141213431 + 34482266 34482364 LTR12C 1709 - 928 1026 144970 98 chain 7733 chr9 141213431 + 34509843 34509927 AluYb8 318 + 234 318 172692 84 chain 547176 chr9 141213431 + 34526550 34532699 L1PA5 6144 - 0 6139 1812 843 0 8 640 0 1 2139 2 0 19 0 1 112 0 4 1562 17 0 336 10 5 469 chain 41805 chr9 141213431 + 34539819 34540363 LTR14 556 - 0 556 66891 73 0 5 6 1 3 9 1 0 4 2 1 56 1 5 161 1 2 69 0 2 160 chain 23198 chr9 141213431 + 34543820 34544171 Tigger2 2703 - 55 431 114686 18 6 11 98 0 9 19 0 3 22 12 6 52 0 3 83 7 18 34 chain 21622 chr9 141213431 + 34642429 34642720 AluSp 311 + 9 298 121691 62 14 13 197 0 1 7 2 0 9 chain 51536 chr9 141213431 + 34668562 34669282 MER4A 717 + 0 717 57939 36 7 8 77 0 3 256 2 0 9 13 14 39 2 1 5 0 1 189 22 17 56 1 0 6 chain 4750 chr9 141213431 + 34672975 34673028 MSTC 436 - 383 436 197913 53 chain 29761 chr9 141213431 + 34677915 34678303 MLT2A1 477 + 2 391 85601 156 17 24 22 0 1 180 7 0 6 chain 19910 chr9 141213431 + 34679484 34679716 AluSc5 308 + 53 285 127442 232 chain 5955 chr9 141213431 + 34689514 34689582 HY3 101 - 16 84 185635 68 chain 5287 chr9 141213431 + 34703659 34703718 MER41B 635 + 488 547 192143 59 chain 28501 chr9 141213431 + 34720159 34720473 AluYb8 318 + 0 313 91179 123 1 0 190 chain 77221 chr9 141213431 + 34731161 34732726 L1MA3 4352 - 24 1217 44857 14 5 4 22 1 0 5 2 1 22 2 0 24 4 0 31 0 2 91 3 0 7 53 14 96 16 17 73 1 0 105 8 21 47 7 0 39 306 0 15 1 0 73 1 0 25 3 0 5 0 3 146 16 8 31 3 0 7 4 5 45 1 0 21 2 0 14 0 1 85 11 8 22 4 0 15 6 4 25 chain 104316 chr9 141213431 + 34739469 34740712 LTR12C 1709 - 0 1624 35666 167 0 102 212 0 4 106 9 6 131 0 278 618 chain 25698 chr9 141213431 + 34741348 34741650 AluSp 311 - 1 303 101294 302 chain 14631 chr9 141213431 + 34748268 34748446 MSTA 426 + 1 179 142483 178 chain 13107 chr9 141213431 + 34749616 34749783 L1PA8 5853 - 0 165 147818 92 4 3 17 2 1 52 chain 24569 chr9 141213431 + 34750606 34751078 L1MA3 4352 + 0 435 107151 15 22 22 39 1 0 67 46 40 25 6 3 19 31 5 102 5 4 94 chain 561528 chr9 141213431 + 34761695 34767851 L1PA3long 6157 - 0 6156 302 1687 0 1 1382 1 0 1858 0 1 188 1 0 1039 chain 2643 chr9 141213431 + 34785567 34785603 MLT1D 503 + 445 478 231117 6 3 0 27 chain 36785 chr9 141213431 + 34788683 34789282 LTR60 593 + 0 593 73819 149 14 3 87 6 5 4 1 0 50 35 42 69 1 2 17 1 0 47 1 0 33 14 19 24 4 0 42 chain 13505 chr9 141213431 + 34798868 34799110 L1PA17 2846 - 154 382 146351 43 1 0 16 17 16 17 1 0 53 0 2 12 1 0 11 11 7 14 8 0 37 chain 116430 chr9 141213431 + 34800384 34802071 L1PA8 5853 + 4414 5853 32301 594 0 5 226 0 16 91 4 6 172 265 0 40 1 0 44 2 0 62 10 9 61 2 1 19 1 0 93 chain 15002 chr9 141213431 + 34808865 34809036 L1PA3long 6157 + 5978 6149 141315 171 chain 29845 chr9 141213431 + 34820535 34821062 L1PA15 4387 - 33 541 85301 25 5 0 14 3 1 44 6 3 44 21 16 22 1 0 55 1 0 25 2 1 17 0 1 20 43 44 90 1 0 39 6 4 43 chain 30040 chr9 141213431 + 34822911 34823227 AluYb9 318 + 0 316 84686 316 chain 2948 chr9 141213431 + 34843636 34843671 MLT1F2 592 - 11 46 226102 35 chain 559098 chr9 141213431 + 34845598 34851749 L1PA3long 6157 - 0 6157 413 662 0 1 1606 0 1 2791 0 3 146 0 1 946 chain 3362 chr9 141213431 + 34852476 34852513 L1M1 2793 - 1038 1075 217802 37 chain 44120 chr9 141213431 + 34853003 34853543 L1PA10 4194 - 641 1181 64056 540 chain 89375 chr9 141213431 + 34863475 34865662 L1M1 2793 + 661 2230 39853 35 47 34 10 2 0 5 2 0 20 12 7 30 18 17 11 2 0 9 1 0 33 32 29 77 1 0 24 2 1 50 0 1 127 1 0 72 39 32 38 0 2 166 10 14 143 0 4 12 3 0 71 0 2 159 10 17 22 4 9 36 0 1 4 3 0 8 0 3 19 0 3 36 722 120 10 3 0 46 chain 190260 chr9 141213431 + 34872202 34874313 L1PA2 6032 - 0 2124 20020 758 0 3 960 2 8 65 0 4 326 chain 7581 chr9 141213431 + 34874313 34874399 L1PA2 6032 + 3787 3873 172045 86 chain 11936 chr9 141213431 + 34877727 34877872 L1PA7 6471 - 3 149 152458 10 0 1 135 chain 525822 chr9 141213431 + 34878246 34884364 L1PA5 6144 + 0 6127 4598 120 0 14 441 0 1 118 0 6 52 12 13 284 0 1 119 9 0 87 11 21 169 0 4 693 6 0 595 2 0 438 1 0 333 1 0 1133 10 13 5 3 0 1365 9 0 102 chain 48428 chr9 141213431 + 34897699 34898407 L1PB1 5432 - 15 691 60162 13 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 15 7 5 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 1 0 11 1 0 362 chain 2750 chr9 141213431 + 34910417 34910455 L1MA8 2339 + 2219 2255 229481 14 2 0 22 chain 144456 chr9 141213431 + 34936047 34937655 SVA_D 2077 + 16 2070 25404 874 0 269 28 0 1 30 0 2 9 0 177 53 1 0 41 1 0 125 0 1 433 2 0 11 chain 43054 chr9 141213431 + 34939920 34940470 LTR19B 566 + 0 566 65350 257 1 7 159 0 16 27 13 12 25 7 1 9 0 1 52 chain 24294 chr9 141213431 + 34942675 34943004 L1PA6 6164 + 5833 6162 108681 117 5 6 47 7 0 6 3 9 144 chain 60369 chr9 141213431 + 34949264 34950011 L1PA8 5853 + 5113 5853 52646 201 5 4 246 1 0 45 2 0 70 1 0 64 1 0 17 1 0 93 chain 31155 chr9 141213431 + 35003289 35003701 LTR7 482 + 0 482 82243 69 8 46 109 8 40 218 chain 317373 chr9 141213431 + 35003703 35007730 HERVH-int 3825 + 0 3825 12709 242 0 1 90 2 1 135 1 0 4 9 12 30 0 3 14 1 0 13 2 1 24 2 1 9 1 0 24 86 0 27 8 5 20 1 0 41 106 0 82 0 1 652 11 1 39 1 0 100 5 0 514 8 13 27 0 1 1074 0 1 256 0 1 366 chain 4546 chr9 141213431 + 35004306 35004360 HERVH-int 3825 + 488 542 187058 54 chain 2572 chr9 141213431 + 35004360 35004392 HERVH-int 3825 + 652 683 197100 4 1 0 27 chain 2224 chr9 141213431 + 35004517 35004545 HERVH-int 3825 + 604 631 236316 14 1 0 13 chain 27933 chr9 141213431 + 35008969 35009330 LTR7 482 + 0 482 93230 69 6 95 57 0 1 44 0 31 185 chain 45785 chr9 141213431 + 35012288 35013304 MER4A 717 - 0 717 62245 6 1 0 6 0 1 151 0 5 23 8 8 18 2 1 7 15 0 84 343 37 96 12 24 113 5 9 84 0 1 16 5 6 21 chain 4933 chr9 141213431 + 35019814 35019869 L1PA11 4918 - 456 511 195897 55 chain 28445 chr9 141213431 + 35021457 35021833 HERVH-int 3825 - 264 639 91398 301 22 21 53 chain 30443 chr9 141213431 + 35024678 35025131 LTR7B 505 - 11 505 83545 40 14 13 79 1 0 80 0 2 9 32 1 18 6 68 66 0 10 108 chain 5003 chr9 141213431 + 35026117 35026175 MER83 447 - 53 111 195110 58 chain 43098 chr9 141213431 + 35026201 35026751 MER41A 554 + 0 554 65290 100 0 3 70 0 1 8 6 0 248 1 2 36 0 5 81 chain 18612 chr9 141213431 + 35029571 35029833 MSTB1-int 1597 + 1328 1593 131184 18 1 2 28 2 0 116 3 4 65 0 3 29 chain 49113 chr9 141213431 + 35040831 35041416 LTR10C 591 - 0 591 59660 79 0 2 44 1 0 140 1 0 15 0 3 19 1 0 147 0 4 138 chain 59185 chr9 141213431 + 35052891 35053660 L1PB1 5432 + 4310 5094 53289 59 5 10 42 1 0 59 0 5 143 0 1 210 3 4 9 0 1 199 1 0 21 0 4 17 chain 30035 chr9 141213431 + 35120756 35121176 LTR7B 505 + 0 494 84695 10 0 2 93 0 10 60 15 77 26 0 2 82 1 0 79 14 13 40 chain 104391 chr9 141213431 + 35130511 35132432 MER4-int 2692 + 79 1646 35641 21 3 0 8 9 7 10 4 0 222 0 3 199 0 1 100 313 4 54 20 18 48 45 8 111 0 1 224 1 2 47 0 1 5 16 15 129 94 89 13 0 1 6 1 0 5 1 2 30 6 7 176 chain 11993 chr9 141213431 + 35137957 35138119 MER41A 554 - 0 154 152230 38 8 0 116 chain 58482 chr9 141213431 + 35156682 35157428 MER4E1 777 + 0 762 53711 21 1 3 60 0 3 81 1 0 4 0 1 48 0 1 241 0 1 79 0 9 210 chain 158996 chr9 141213431 + 35182468 35184706 SVA_A 1864 - 0 1846 23465 719 1 0 10 41 0 149 76 0 52 76 0 48 1 0 9 2 0 150 2 0 53 117 0 106 39 0 13 40 0 16 0 3 518 chain 2718 chr9 141213431 + 35183200 35183237 SVA_A 1864 - 766 803 54232 37 chain 5582 chr9 141213431 + 35183388 35183464 SVA_A 1864 - 952 1025 54232 16 10 9 10 2 0 38 chain 5582 chr9 141213431 + 35183516 35183592 SVA_A 1864 - 1077 1153 54232 76 chain 5655 chr9 141213431 + 35183857 35183934 SVA_A 1864 - 1380 1456 54232 21 7 6 49 chain 130237 chr9 141213431 + 35187004 35189000 HUERS-P3b-int 2065 - 37 2048 28034 87 15 13 42 6 2 66 6 3 86 3 1 31 1 0 6 1 2 52 1 0 18 2 0 17 2 0 59 9 7 20 24 1 41 8 7 7 0 3 280 20 156 166 1 0 27 1 0 83 1 2 27 6 4 131 3 0 112 0 3 107 0 1 44 82 7 8 4 0 17 0 3 185 4 0 77 chain 389392 chr9 141213431 + 35198868 35203605 L1PA5 6144 - 9 4454 10469 191 0 18 578 0 3 535 0 5 312 0 1 788 0 1 533 3 0 236 0 1 321 12 1 403 308 0 12 0 1 384 1 0 92 0 1 28 chain 23771 chr9 141213431 + 35206601 35206887 AluSc 308 + 11 297 111646 286 chain 25344 chr9 141213431 + 35208407 35208833 MSTA 426 - 0 426 102987 62 0 2 45 11 17 44 1 0 6 20 25 44 1 0 14 0 3 5 0 1 4 19 11 25 10 3 115 chain 14979 chr9 141213431 + 35228342 35228514 L1PA6 6164 - 2 178 141382 8 0 4 164 chain 83616 chr9 141213431 + 35239200 35240243 MER11C 1089 - 15 1089 42069 290 1 9 176 12 13 246 4 21 49 4 7 59 4 6 198 chain 400662 chr9 141213431 + 35245356 35249861 L1PA5 6144 - 9 4512 10072 139 1 0 118 2 1 582 0 1 710 2 0 1414 1 0 626 0 1 690 0 1 220 chain 23437 chr9 141213431 + 35252671 35252941 AluY 311 + 26 297 113434 106 0 1 164 chain 10563 chr9 141213431 + 35263773 35263967 MLT1A 405 + 144 368 157982 17 28 62 56 15 11 78 chain 21033 chr9 141213431 + 35281002 35281263 AluSc8 310 + 38 302 123799 85 1 0 9 0 3 126 1 2 39 chain 4674 chr9 141213431 + 35286040 35286106 MER21C 908 + 3 65 198824 5 3 0 21 1 0 36 chain 8581 chr9 141213431 + 35291918 35292046 MER85 139 + 0 139 167836 82 20 31 26 chain 27871 chr9 141213431 + 35297544 35297845 AluYk4 311 - 10 311 93451 301 chain 8518 chr9 141213431 + 35314710 35315265 L1PB4 2604 - 32 351 168203 16 9 8 46 411 176 73 chain 6763 chr9 141213431 + 35326688 35326775 MER44A 345 - 123 218 179228 40 0 8 47 chain 6700 chr9 141213431 + 35326869 35326996 L1MB7 1623 - 545 669 179685 30 1 0 16 2 1 22 20 19 36 chain 23882 chr9 141213431 + 35357015 35357560 L1MB7 1623 - 211 717 111010 42 48 43 4 1 0 20 14 12 9 1 0 14 11 8 12 16 5 20 4 0 14 1 0 7 1 0 5 5 0 9 3 1 115 39 30 7 0 7 36 1 0 86 chain 22237 chr9 141213431 + 35392543 35392791 L1PA3long 6157 + 5901 6149 119181 248 chain 38474 chr9 141213431 + 35454101 35454792 L1M1 2793 + 662 1323 71485 40 94 73 27 11 10 16 14 11 20 6 0 36 3 1 6 1 0 101 1 0 52 1 4 119 2 1 84 0 3 57 chain 25885 chr9 141213431 + 35455413 35455906 LTR10F 562 - 0 562 100505 17 9 10 60 2 0 162 107 51 31 4 119 19 7 12 17 0 6 58 chain 202580 chr9 141213431 + 35455966 35458921 HERVIP10FH-int 2884 - 8 2713 19020 5 2 0 16 2 0 8 202 23 35 10 4 17 1 0 9 16 15 39 1 0 66 2 1 99 0 1 162 0 7 95 1 0 5 8 18 201 1 0 199 1 0 68 6 5 14 1 0 3 10 0 29 32 20 43 95 56 145 6 1 61 1 0 9 1 0 9 3 0 8 4 1 251 0 3 207 0 12 278 2 1 30 0 1 21 2 0 32 0 1 51 1 4 87 8 0 192 5 0 37 chain 35813 chr9 141213431 + 35461605 35462086 LTR10F 562 - 0 562 75113 87 2 0 194 0 34 22 7 0 13 4 32 36 1 29 115 chain 41435 chr9 141213431 + 35483827 35484448 Tigger1 2417 - 1518 2166 67373 102 12 18 142 3 6 71 4 8 129 0 1 67 22 26 17 7 16 45 chain 5782 chr9 141213431 + 35488987 35489065 MER50B 698 - 618 698 187343 30 2 0 32 0 4 14 chain 23312 chr9 141213431 + 35500144 35500460 THE1B 368 - 0 368 114146 82 0 39 36 1 4 7 6 0 23 0 1 117 0 15 44 chain 5060 chr9 141213431 + 35500465 35500532 MLT1H2 457 - 8 75 194535 67 chain 20896 chr9 141213431 + 35503481 35503771 L1PB2 3958 - 120 407 124292 18 0 3 42 6 5 91 1 0 62 1 0 49 6 3 14 chain 24210 chr9 141213431 + 35532970 35533257 AluSz6 309 + 10 296 109155 115 1 0 171 chain 4119 chr9 141213431 + 35543791 35543863 L1MB8 1703 - 139 207 205660 40 17 13 15 chain 24021 chr9 141213431 + 35568706 35569002 AluY 311 + 10 308 110210 60 0 3 59 0 1 155 2 0 20 chain 18309 chr9 141213431 + 35581247 35581496 THE1D-int 1627 + 1366 1621 132055 72 11 18 121 1 0 44 chain 39232 chr9 141213431 + 35581983 35582480 MER9a3 513 + 15 513 70409 4 0 1 90 0 1 145 1 0 151 1 0 27 3 4 75 chain 158469 chr9 141213431 + 35583413 35585340 HERVK9-int 4720 + 71 2000 23534 50 7 6 5 1 0 28 1 0 8 16 6 106 1 0 29 5 4 510 0 1 42 0 15 167 8 7 378 0 2 565 chain 98404 chr9 141213431 + 35586571 35587827 L1PBa 3878 + 1076 3739 37192 261 1 0 110 8 10 157 0 4 20 0 2 147 6 7 232 0 1400 289 2 1 23 chain 15468 chr9 141213431 + 35590566 35590922 L1PB1 5432 + 5107 5422 139995 7 5 0 20 1 0 12 1 0 12 21 15 47 2 1 16 1 0 43 2 1 15 24 13 17 9 6 14 2 0 24 1 0 23 16 8 21 chain 38003 chr9 141213431 + 35636815 35637330 LTR7B 505 + 0 496 72128 208 6 5 20 2 0 5 8 4 7 8 0 61 3 0 131 11 10 45 chain 63284 chr9 141213431 + 35640310 35641067 LTR17 781 - 10 781 51330 21 0 22 310 18 0 90 0 1 199 0 9 119 chain 127329 chr9 141213431 + 35641381 35642824 HERV17-int 4347 - 0 1448 28733 62 0 1 967 1 5 413 chain 19942 chr9 141213431 + 35656506 35656805 MER1B 344 + 41 343 127323 33 22 21 37 0 1 132 12 15 63 chain 29084 chr9 141213431 + 35709603 35709913 AluYg6 310 + 0 310 88616 310 chain 22597 chr9 141213431 + 35786810 35787080 AluY 311 + 0 266 117593 126 4 0 140 chain 27857 chr9 141213431 + 35803105 35803400 AluYa5 310 - 16 310 93505 168 1 0 126 chain 10164 chr9 141213431 + 35903936 35904064 MER85 139 + 1 139 159779 88 0 10 40 chain 8306 chr9 141213431 + 35940639 35940750 MLT1A 405 + 248 358 169364 70 1 0 40 chain 84331 chr9 141213431 + 35950609 35951541 L1PA3long 6157 - 0 931 41777 857 1 0 74 chain 24544 chr9 141213431 + 35988938 35989388 L1PB1 5432 - 12 433 107291 16 1 0 13 1 0 21 1 0 26 22 17 19 20 9 4 1 0 14 1 0 44 2 1 15 2 1 53 2 0 7 18 13 13 1 0 20 3 0 8 0 5 102 chain 29963 chr9 141213431 + 36000696 36001075 THE1C 375 - 7 375 84927 18 1 0 284 10 0 66 chain 21860 chr9 141213431 + 36001388 36001765 L1MA3 4352 + 3975 4328 120780 110 45 20 7 0 7 60 1 0 81 2 0 22 8 6 19 9 8 13 chain 24914 chr9 141213431 + 36014434 36014817 MSTA 426 + 1 426 105247 107 0 21 5 0 3 66 43 41 52 1 21 109 chain 19097 chr9 141213431 + 36042079 36042540 L1PB1 5432 - 9 408 129822 5 1 0 14 1 0 12 1 0 22 1 0 23 19 24 15 14 5 7 11 0 14 2 1 45 7 5 10 2 1 51 19 13 12 1 0 6 1 0 25 52 10 17 0 11 51 chain 34877 chr9 141213431 + 36043981 36044502 L1PB 1623 - 99 600 76366 9 1 0 13 4 0 14 3 0 4 1 0 30 2 1 7 1 0 139 11 1 89 9 10 184 chain 74856 chr9 141213431 + 36057841 36058652 L1PA3long 6157 + 5338 6150 46087 359 0 1 452 chain 37941 chr9 141213431 + 36086284 36086770 LTR12_ 688 - 0 688 72219 73 0 134 27 5 7 240 0 1 2 0 24 62 0 41 77 chain 40713 chr9 141213431 + 36087178 36087642 L1PA7 6471 + 6000 6464 68286 464 chain 21769 chr9 141213431 + 36089506 36089832 Tigger4b 360 + 16 359 121141 9 0 1 4 0 7 179 0 1 62 37 45 35 chain 25459 chr9 141213431 + 36116122 36116422 AluSp 311 - 9 310 102417 224 0 1 76 chain 5773 chr9 141213431 + 36127697 36127817 LTR33 499 - 5 121 187415 20 37 33 63 chain 7947 chr9 141213431 + 36144318 36144432 L1MB2 1706 - 12 124 171342 83 1 0 13 1 0 16 chain 16317 chr9 141213431 + 36156615 36156834 MER1B 344 + 42 263 137445 39 13 15 167 chain 21832 chr9 141213431 + 36167144 36167796 LTR8 732 - 54 374 120881 60 330 0 81 21 15 13 0 5 13 0 1 41 2 0 91 chain 78154 chr9 141213431 + 36178569 36182865 L1MA3 4352 + 22 4205 44436 15 5 8 86 0 1 23 1 0 20 5 0 79 1030 107 60 1 0 25 0 5 132 30 25 85 4 0 10 561 2152 189 1 0 4 0 1 174 0 10 38 5 4 43 1 0 21 6 9 33 3 0 12 0 4 5 0 1 49 1457 671 56 1 0 26 chain 45305 chr9 141213431 + 36180200 36180712 MER9a1 513 + 0 513 62711 308 0 1 204 chain 22303 chr9 141213431 + 36188191 36188616 LTR3A 482 + 0 420 118902 12 2 0 13 1 0 82 0 3 70 100 95 105 0 2 14 12 10 14 chain 28221 chr9 141213431 + 36222133 36222432 AluYa5 310 + 0 298 92228 123 1 0 175 chain 3011 chr9 141213431 + 36231006 36231038 HY3 101 + 17 49 224784 32 chain 3052 chr9 141213431 + 36260518 36260584 MLT1D 503 - 0 67 223961 12 5 7 27 5 4 17 chain 61639 chr9 141213431 + 36264620 36265389 LTR17 781 + 0 781 52061 326 2 1 11 11 0 186 0 1 185 2 24 39 0 1 7 chain 5852 chr9 141213431 + 36267779 36267846 U4 144 + 0 67 186660 67 chain 27108 chr9 141213431 + 36270513 36270813 AluYk4 311 - 11 311 95912 300 chain 3301 chr9 141213431 + 36284313 36284352 tRNA-Thr-ACA 39 + 0 39 218968 39 chain 22220 chr9 141213431 + 36285406 36285717 Tigger1 2417 - 941 1245 119263 179 6 0 55 12 11 59 chain 37342 chr9 141213431 + 36304386 36304839 LTR15 485 + 21 478 73032 129 0 2 130 0 4 151 1 0 5 2 0 14 0 1 21 chain 29921 chr9 141213431 + 36309289 36309600 AluYb8 318 - 7 318 85036 311 chain 51458 chr9 141213431 + 36319877 36320535 PABL_A 660 + 0 660 58000 59 0 4 153 4 0 19 1 0 188 0 3 234 chain 8786 chr9 141213431 + 36350854 36351032 MER30 238 + 38 234 166732 46 50 70 34 3 0 25 0 1 20 chain 37992 chr9 141213431 + 36385675 36386177 HSMAR1 1287 + 785 1287 72143 128 12 17 121 5 0 236 chain 13416 chr9 141213431 + 36387118 36387311 MER41A 554 + 322 546 146650 86 0 26 34 13 18 60 chain 45755 chr9 141213431 + 36413761 36414407 L1PBa 3878 - 1706 2354 62270 6 0 5 105 0 15 170 14 1 150 1 0 4 0 3 91 3 0 6 2 3 62 14 9 18 chain 20397 chr9 141213431 + 36432505 36432757 AluSc 308 + 0 262 125903 50 4 0 185 0 14 13 chain 10461 chr9 141213431 + 36433208 36433425 L1MA3 4352 + 4145 4352 158431 25 14 13 21 2 1 12 0 4 39 6 2 20 2 1 5 1 0 29 2 0 11 6 2 22 chain 16360 chr9 141213431 + 36438305 36438528 MER30 238 + 1 238 137310 107 4 22 9 1 0 60 3 0 39 chain 50892 chr9 141213431 + 36458139 36458786 LTR12_ 688 + 0 688 58375 55 0 41 42 20 8 395 1 4 97 0 9 37 chain 25148 chr9 141213431 + 36504654 36504943 AluSp 311 - 8 297 104009 289 chain 112025 chr9 141213431 + 36534071 36536189 THE1B-int 1605 + 0 1605 33656 411 651 40 21 1 0 4 0 1 204 0 117 154 5 6 477 2 1 34 22 3 132 chain 57969 chr9 141213431 + 36541193 36542181 L1PA5 6144 + 5471 6142 53990 115 314 0 545 3 0 11 chain 22662 chr9 141213431 + 36553400 36553700 AluY 311 + 1 288 117256 122 1 0 8 1 2 10 3 0 7 7 5 99 8 0 34 chain 42331 chr9 141213431 + 36559209 36559729 MER41A 554 - 32 554 66231 55 0 1 424 1 2 40 chain 4079 chr9 141213431 + 36563696 36563749 MER53 195 + 0 53 206199 53 chain 18545 chr9 141213431 + 36568397 36568639 AluSp 311 - 53 298 131370 177 9 10 5 0 2 51 chain 41428 chr9 141213431 + 36568716 36569270 Tigger1 2417 + 285 853 67382 46 10 11 184 0 2 140 2 12 40 0 1 132 chain 3905 chr9 141213431 + 36571410 36571458 MER57B2 428 + 0 48 208779 48 chain 22198 chr9 141213431 + 36577660 36577948 AluSp 311 - 22 310 119359 12 9 11 138 3 1 126 chain 24703 chr9 141213431 + 36588379 36588675 AluSp 311 - 15 311 106414 296 chain 126600 chr9 141213431 + 36614430 36616005 SVA_F 1814 - 0 1479 28919 633 1 0 7 0 46 162 3 18 61 0 1 31 1 0 8 178 22 490 chain 6058 chr9 141213431 + 36615337 36615418 SVA_F 1814 - 728 837 145645 6 10 37 4 0 1 61 chain 46585 chr9 141213431 + 36626050 36626668 PABL_A 660 + 0 636 61540 127 1 0 100 0 1 17 20 33 106 0 3 195 0 2 52 chain 2875 chr9 141213431 + 36650612 36650651 HAL1 992 + 518 557 227426 29 0 1 4 1 0 5 chain 29922 chr9 141213431 + 36686716 36687103 MLT2A1 477 - 94 477 85031 106 1 0 104 8 5 168 chain 23613 chr9 141213431 + 36697895 36698253 THE1D 372 - 0 372 112512 60 7 9 78 1 0 4 13 15 10 17 27 12 0 1 156 chain 124566 chr9 141213431 + 36698264 36699911 THE1D-int 1627 - 11 1627 29519 39 1 0 551 0 1 311 10 11 61 41 5 94 1 0 277 12 15 228 9 11 12 chain 24383 chr9 141213431 + 36704710 36705001 AluSg4 309 - 18 309 108184 291 chain 11809 chr9 141213431 + 36706524 36706680 THE1B 368 - 204 361 152986 48 4 5 104 chain 2920 chr9 141213431 + 36732269 36732300 MER57A1 433 - 402 433 226699 31 chain 59855 chr9 141213431 + 36774218 36774933 L1PA7 6471 - 4 714 52898 6 4 0 140 1 0 564 chain 33186 chr9 141213431 + 36777300 36777677 L1PA3long 6157 - 0 376 78926 259 1 0 117 chain 29011 chr9 141213431 + 36777677 36777985 AluYb8 318 - 10 318 88936 308 chain 154796 chr9 141213431 + 36917794 36920572 Tigger1 2417 + 108 2293 24002 185 3 5 28 2 0 6 15 17 6 2 0 208 0 4 75 0 12 43 310 0 210 0 16 61 18 22 57 1 0 229 4 0 293 322 1 85 13 7 77 0 1 314 0 1 103 0 3 42 1 2 24 12 13 6 0 6 23 chain 11886 chr9 141213431 + 36920574 36920768 Tigger4a 237 - 2 200 152677 56 7 8 33 5 7 60 4 5 29 chain 6752 chr9 141213431 + 36930878 36930968 UCON1 95 + 5 94 179308 8 1 0 81 chain 7484 chr9 141213431 + 36992929 36993014 L1PA8 5853 - 0 85 174242 85 chain 25947 chr9 141213431 + 37015576 37015876 AluSp 311 - 12 311 100224 192 1 0 107 chain 6433 chr9 141213431 + 37061468 37061549 MER63B 433 - 295 376 181757 81 chain 5073 chr9 141213431 + 37062968 37063027 L1MB3 1562 + 1292 1351 194382 59 chain 24074 chr9 141213431 + 37081567 37081856 AluSp 311 + 0 288 109904 28 1 0 100 1 0 10 0 1 149 chain 11724 chr9 141213431 + 37132744 37133206 MER30 238 - 2 189 153366 43 0 3 61 300 22 58 chain 25123 chr9 141213431 + 37190732 37191037 AluSp 311 + 0 300 104159 28 1 0 92 4 0 180 chain 116897 chr9 141213431 + 37203312 37204827 L1PA8 5853 - 0 1519 32161 92 2 1 19 2 1 44 1 13 73 2 0 18 2 0 28 1 0 480 0 2 73 2 0 645 6 5 25 chain 9347 chr9 141213431 + 37204924 37205056 MSTD 398 + 0 132 163810 56 7 7 69 chain 22095 chr9 141213431 + 37235613 37235876 AluSc5 308 - 36 300 119816 69 0 1 194 chain 5818 chr9 141213431 + 37298278 37298350 MSTA 426 - 324 396 186973 72 chain 8135 chr9 141213431 + 37322264 37322366 HY1 111 + 9 111 170305 102 chain 5945 chr9 141213431 + 37405141 37405216 LTR48B 642 - 10 85 185737 75 chain 10741 chr9 141213431 + 37407241 37407375 LTR72 515 + 332 466 157240 134 chain 3935 chr9 141213431 + 37416170 37416213 MER5A1 166 + 94 137 208347 43 chain 21632 chr9 141213431 + 37462292 37462555 LTR27 711 + 0 261 121649 87 1 0 117 1 0 57 chain 21677 chr9 141213431 + 37514555 37514823 AluSx1 309 + 5 275 121483 103 1 3 164 chain 14310 chr9 141213431 + 37564944 37565262 THE1D 372 + 0 335 143535 15 0 2 15 1 0 25 10 1 16 5 6 20 2 1 34 5 10 22 63 79 78 0 4 7 chain 26654 chr9 141213431 + 37599129 37599455 AluYk4 311 + 0 307 97475 126 5 0 125 15 1 55 chain 14358 chr9 141213431 + 37634777 37634946 L1PA8A 6298 - 6 175 143350 169 chain 19700 chr9 141213431 + 37661812 37662046 7SK 245 - 11 245 128099 234 chain 22855 chr9 141213431 + 37664317 37664623 L1PA8 5853 - 0 303 116309 66 0 1 26 1 0 19 2 1 39 1 3 19 1 0 71 2 0 44 1 0 14 chain 26097 chr9 141213431 + 37669718 37670019 AluSp 311 + 10 311 99631 301 chain 22456 chr9 141213431 + 37671695 37671966 AluSx1 309 + 15 286 118218 271 chain 26030 chr9 141213431 + 37672648 37672980 THE1A 353 - 0 353 99900 85 0 1 35 4 24 208 chain 133612 chr9 141213431 + 37672989 37674558 THE1A-int 1579 - 9 1579 27297 883 0 1 4 1 0 176 0 1 505 chain 25284 chr9 141213431 + 37674558 37674882 THE1A 353 - 0 324 103297 243 2 1 66 0 1 13 chain 7122 chr9 141213431 + 37703763 37703932 L1MB8 1703 - 157 361 176601 46 0 3 12 58 91 15 1 0 37 chain 18650 chr9 141213431 + 37720675 37720891 AluSc 308 + 72 288 131088 216 chain 4062 chr9 141213431 + 37751623 37751679 MER4D0 881 - 526 581 206467 14 1 0 41 chain 11372 chr9 141213431 + 37752392 37752678 LTR12C 1709 + 932 1183 154809 85 43 2 26 43 6 35 30 73 24 chain 1162 chr9 141213431 + 37752624 37752654 LTR12C 1709 + 885 915 157940 30 chain 5543 chr9 141213431 + 37752709 37752776 LTR12C 1709 + 651 718 189630 67 chain 156934 chr9 141213431 + 37765101 37766923 L1PA4 6152 - 1 1853 23736 8 1 0 6 0 4 65 0 2 51 7 6 257 0 12 431 0 8 7 4 1 7 0 4 446 2 0 47 0 2 253 0 1 175 0 4 55 chain 4484 chr9 141213431 + 37767019 37767073 LTR53 516 - 462 516 200978 54 chain 27125 chr9 141213431 + 37798094 37798379 AluYb8 318 - 0 285 95849 285 chain 81902 chr9 141213431 + 37821458 37822771 L1PB1 5432 + 4146 5413 42803 212 4 22 229 5 12 8 9 0 9 2 1 42 15 13 127 21 22 260 39 11 24 1 0 9 16 11 9 2 0 53 19 17 44 1 0 15 3 0 16 33 20 14 2 0 16 15 14 15 1 0 10 1 0 12 chain 2802 chr9 141213431 + 37840171 37840201 Tigger3c 601 + 64 94 228717 30 chain 5245 chr9 141213431 + 37851234 37851465 AluJo 314 - 64 303 192570 16 17 157 32 132 0 34 chain 3116 chr9 141213431 + 37877346 37877380 MLT1A 405 + 360 394 222617 34 chain 22833 chr9 141213431 + 37880470 37880757 AluSp 311 + 5 288 116430 201 1 2 4 1 0 48 0 1 21 5 0 6 chain 61135 chr9 141213431 + 37891192 37891862 SVA_C 1631 + 955 1628 52278 63 1 0 589 0 4 17 chain 11929 chr9 141213431 + 37993421 37993557 L1PA5 6144 + 5999 6135 152484 136 chain 121517 chr9 141213431 + 38075186 38077010 LTR12C 1709 + 0 1709 30533 139 17 11 150 0 11 27 0 43 278 0 8 36 41 0 134 1 0 235 0 2 38 1 0 4 4 2 97 44 13 145 0 4 61 4 3 46 6 8 86 0 33 11 1 0 27 133 0 48 1 0 9 chain 29339 chr9 141213431 + 38095861 38096166 AluYa8 305 + 0 305 87354 305 chain 3716 chr9 141213431 + 38111490 38111530 MER66C 541 + 369 409 211698 40 chain 8408 chr9 141213431 + 38147430 38147543 U8 134 + 4 118 168798 40 1 2 72 chain 9675 chr9 141213431 + 38148918 38149328 MLT1D 503 + 51 494 162219 56 48 43 23 6 12 13 112 144 14 76 76 62 chain 39968 chr9 141213431 + 38169268 38169871 LTR34 700 + 55 700 69368 20 11 10 38 8 17 74 1 2 61 0 15 57 5 12 20 1 4 128 0 11 20 2 0 78 12 11 67 chain 43760 chr9 141213431 + 38170787 38171322 LTR10A 586 - 22 586 64498 207 1 0 106 0 29 147 0 1 74 chain 3541 chr9 141213431 + 38171423 38171482 LTR10A 586 + 186 235 214692 41 10 0 8 chain 12950 chr9 141213431 + 38205912 38206157 Tigger3a 397 + 139 397 148433 9 0 10 117 12 16 42 46 45 19 chain 106941 chr9 141213431 + 38219398 38221178 L1MA3 4352 - 996 2475 34993 143 0 1 262 0 1 76 0 1 221 0 3 5 3 0 15 0 4 32 5 3 72 5 0 105 1 0 36 5 0 29 7 8 26 1 0 73 0 4 61 0 3 29 0 1 45 304 2 30 11 9 75 0 1 103 chain 10211 chr9 141213431 + 38239219 38239522 MLT2B4 540 + 0 360 159565 70 1 0 31 0 1 11 110 128 25 7 59 11 13 1 4 1 0 19 chain 133952 chr9 141213431 + 38241591 38243607 SVA_F 1814 + 335 1814 27221 502 6 6 71 48 0 34 352 14 247 150 0 595 1 0 10 chain 29204 chr9 141213431 + 38242256 38242582 SVA_F 1814 + 967 1291 88024 154 1 0 153 1 0 17 chain 2267 chr9 141213431 + 38242851 38242899 SVA_F 1814 + 1160 1208 119982 48 chain 5793 chr9 141213431 + 38242899 38242966 SVA_F 1814 + 919 1001 168440 28 0 15 39 chain 1555 chr9 141213431 + 38242973 38243001 SVA_F 1814 + 1005 1033 133496 28 chain 24273 chr9 141213431 + 38245462 38245744 AluYk4 311 - 22 303 108829 20 1 0 261 chain 44751 chr9 141213431 + 38252726 38253280 MER41A 554 + 0 554 63332 397 1 0 4 0 1 152 chain 8359 chr9 141213431 + 38273973 38274074 MLT2B3 573 + 4 105 169081 101 chain 3283 chr9 141213431 + 38279986 38280039 MER41E 591 - 533 591 219315 22 5 10 26 chain 4545 chr9 141213431 + 38281494 38281582 MER5A 189 + 44 133 200285 31 23 24 34 chain 6823 chr9 141213431 + 38285982 38286082 MER30 238 - 1 103 178768 41 3 0 21 0 2 5 1 0 9 0 4 20 chain 30356 chr9 141213431 + 38313823 38314219 L1PA8 5853 - 0 389 83763 93 1 0 19 3 2 40 7 0 6 6 11 74 2 0 44 1 0 100 chain 4996 chr9 141213431 + 38314219 38314275 L1PA8 5853 + 5357 5413 195179 56 chain 33716 chr9 141213431 + 38322479 38322904 L1PA8 5853 - 0 432 78066 93 1 0 16 1 0 53 0 9 73 2 0 49 1 0 64 0 3 72 chain 157023 chr9 141213431 + 38324050 38325983 SVA_F 1814 + 0 1814 23719 828 27 19 8 1 0 31 48 0 61 0 15 16 5 6 144 0 1 35 78 0 13 1 0 278 0 3 339 3 0 17 chain 2188 chr9 141213431 + 38324878 38324905 SVA_F 1814 + 868 896 73572 17 1 2 9 chain 3890 chr9 141213431 + 38324945 38324993 SVA_F 1814 + 936 999 73572 6 5 20 37 chain 5381 chr9 141213431 + 38325254 38325332 SVA_F 1814 + 924 988 128213 1 1 0 4 46 33 26 chain 4169 chr9 141213431 + 38325260 38325306 SVA_F 1814 + 1043 1089 130512 46 chain 22171 chr9 141213431 + 38325994 38326545 L1MA8 2339 + 1720 2236 119487 120 4 0 60 0 8 23 4 0 23 1 0 4 1 0 21 31 30 52 125 99 13 43 37 26 chain 132182 chr9 141213431 + 38348641 38350527 L1PB1 5432 - 12 1832 27595 16 1 0 13 1 0 21 1 0 24 2 0 14 14 11 24 14 1 15 8 7 25 13 12 18 1 0 52 2 0 9 4 0 12 8 6 26 1 0 9 65 11 39 4 5 170 0 3 71 0 9 87 1 0 89 3 0 278 0 5 88 0 3 226 1 0 35 2 3 161 0 4 218 chain 28717 chr9 141213431 + 38351389 38351768 THE1C 375 + 2 375 90262 123 3 0 61 0 1 12 3 0 149 2 1 26 chain 101893 chr9 141213431 + 38377391 38378809 LTR12C 1709 + 0 1709 36287 215 3 1 61 16 19 37 0 46 84 2 0 6 0 1 107 1 2 25 15 11 35 0 278 184 1 0 4 4 2 97 44 13 146 0 2 248 10 11 47 0 1 26 chain 41689 chr9 141213431 + 38393747 38394248 LTR10D 510 + 0 510 67040 65 1 6 7 5 0 22 0 8 154 0 1 247 chain 54589 chr9 141213431 + 38438398 38439011 L1PA4 6152 + 5538 6152 55974 500 0 1 113 chain 3306 chr9 141213431 + 38547099 38547139 MSTA 426 - 329 369 218847 40 chain 3634 chr9 141213431 + 38553239 38553278 MSTA 426 - 329 368 213065 39 chain 14653 chr9 141213431 + 38566409 38566610 MSTA-int 1630 - 1400 1607 142414 98 8 14 95 chain 21005 chr9 141213431 + 38589347 38589672 LTR76 689 + 365 681 123891 23 2 0 6 1 0 81 0 6 33 6 0 83 4 3 40 14 11 16 2 0 14 chain 8131 chr9 141213431 + 38623337 38623431 AluYk4 311 - 23 117 170326 94 chain 13307 chr9 141213431 + 38641022 38641219 L1PA8 5853 - 0 190 147057 52 4 0 41 1 0 19 2 1 39 5 6 7 1 0 9 1 0 16 chain 21548 chr9 141213431 + 38669629 38669901 AluY 311 + 9 276 121970 114 9 4 149 chain 7530 chr9 141213431 + 38694976 38695069 L1PA8 5853 - 178 270 173972 4 0 1 62 2 0 25 chain 10403 chr9 141213431 + 38695069 38695209 L1PA8 5853 + 5701 5852 158674 39 2 1 19 1 0 44 0 13 35 chain 22066 chr9 141213431 + 38695246 38695526 AluY 311 + 13 287 119934 48 4 0 70 3 0 22 1 2 132 chain 22497 chr9 141213431 + 38709983 38710251 AluSc 308 - 27 295 118039 268 chain 17406 chr9 141213431 + 38727109 38727311 AluY 311 + 84 286 134485 202 chain 28761 chr9 141213431 + 38732073 38732426 L1PA7 6471 + 6111 6465 90063 207 1 2 145 chain 5152 chr9 141213431 + 38732864 38732959 L1PB1 5432 - 35 123 193527 6 1 0 21 1 0 24 2 0 14 8 5 18 chain 3669 chr9 141213431 + 38750099 38750153 L1MC3 1789 - 403 452 212420 9 5 0 40 chain 22462 chr9 141213431 + 38773754 38774056 L1MA3 4352 - 1411 1712 118189 33 1 2 34 1 0 148 2 1 83 chain 533582 chr9 141213431 + 38779395 38785508 L1PA5 6144 + 3 6142 3755 33 0 1 1104 1 6 149 0 1 62 0 19 152 1 0 409 1 0 1236 0 1 89 0 4 407 5 0 203 1 0 510 1 0 15 0 1 240 0 1 1335 10 17 128 1 0 9 4 0 7 chain 113375 chr9 141213431 + 38793021 38794409 L1PA7 6471 - 19 1379 33259 142 2 0 69 1 0 276 1 0 195 15 5 131 4 0 9 0 1 4 1 0 264 9 0 94 2 1 169 chain 128720 chr9 141213431 + 38797740 38800285 L1PB2 3958 - 120 1950 28384 60 5 4 19 6 0 19 1 0 13 1 2 5 1 0 35 1 0 18 377 16 30 1 0 63 2 0 5 3 4 94 16 12 57 7 1 10 9 8 12 0 1 43 2 0 54 10 7 55 0 1 108 19 5 25 0 1 127 1 0 7 1 0 354 1 2 80 2 0 7 0 3 12 316 0 451 chain 104454 chr9 141213431 + 38800286 38801772 L1PB2 3958 + 482 1967 35624 250 8 35 9 29 0 30 3 5 186 1 0 4 0 2 219 5 6 27 0 1 56 0 1 30 9 14 225 13 1 15 8 6 51 1 0 140 0 3 161 0 2 6 chain 6869 chr9 141213431 + 38841930 38842266 MLT1C 463 + 73 406 178436 51 6 0 13 8 9 16 67 57 27 126 138 22 chain 29124 chr9 141213431 + 38843977 38844285 AluYb8 318 - 10 318 88440 308 chain 28108 chr9 141213431 + 38857617 38857931 AluYa5 310 - 2 310 92618 75 6 0 233 chain 34394 chr9 141213431 + 38890863 38891239 L1PA2 6032 + 5656 6031 77067 360 1 0 15 chain 33583 chr9 141213431 + 38895631 38896087 L1PA8 5853 - 0 470 78270 44 5 15 34 1 0 19 2 1 36 12 11 14 1 0 69 0 7 39 1 0 41 0 2 138 chain 11716 chr9 141213431 + 38896411 38896551 LTR12F 595 - 10 150 153402 140 chain 80670 chr9 141213431 + 38896569 38897581 HERV9-int 5642 - 4554 5642 43317 65 0 85 88 4 2 51 2 1 80 3 0 112 14 11 593 chain 29609 chr9 141213431 + 38897602 38898413 LTR12F 595 - 0 595 86178 77 321 0 167 6 94 22 48 0 10 15 79 41 1 2 103 chain 3493 chr9 141213431 + 38907632 38907669 L1MB5 1630 - 401 438 215455 37 chain 24291 chr9 141213431 + 38923275 38923564 L1P4 1494 - 299 588 108698 289 chain 20756 chr9 141213431 + 38927017 38927258 L1PA5 6144 - 0 244 124776 141 0 3 100 chain 53967 chr9 141213431 + 38933316 38934020 L1PA8 5853 - 0 691 56390 58 7 0 34 2 1 19 2 1 36 12 11 14 1 0 71 2 0 44 1 0 48 0 1 353 chain 6099 chr9 141213431 + 38936323 38936399 MER20 218 - 142 218 184419 76 chain 29583 chr9 141213431 + 38955606 38955992 LTR7 482 - 14 482 86257 154 1 0 8 0 1 42 7 39 73 0 50 101 chain 43966 chr9 141213431 + 38959277 38959783 MER9a2 513 - 0 513 64243 82 0 7 424 chain 29224 chr9 141213431 + 38979827 38980136 AluYb8 318 - 8 317 87938 309 chain 14081 chr9 141213431 + 38985743 38985956 L1PA8 5853 - 6 215 144287 74 14 13 16 1 0 44 8 7 16 1 0 39 chain 24972 chr9 141213431 + 39012498 39012769 AluYa5 310 + 35 306 104944 271 chain 115004 chr9 141213431 + 39041537 39042917 LTR12C 1709 - 9 1709 32795 90 8 7 375 0 4 107 9 325 681 6 7 104 chain 23311 chr9 141213431 + 39077289 39077559 AluY 311 + 16 288 114148 116 0 2 154 chain 5067 chr9 141213431 + 39082106 39082271 MER3 215 - 56 211 194453 24 1 0 5 7 8 31 68 58 29 chain 3780 chr9 141213431 + 39096567 39096617 L1MA4 2864 - 62 110 210656 35 2 0 13 chain 22153 chr9 141213431 + 39120389 39120657 AluY 311 + 0 273 119578 72 0 3 57 7 9 132 chain 17329 chr9 141213431 + 39124473 39124668 L1PA5 6144 + 5098 5293 134715 195 chain 73852 chr9 141213431 + 39124669 39125501 L1PA5 6144 + 5298 6130 46588 832 chain 10217 chr9 141213431 + 39135689 39135813 MER47A 366 - 118 242 159531 124 chain 21474 chr9 141213431 + 39146891 39147255 THE1B 368 + 0 368 122240 64 1 0 105 1 0 21 17 24 10 32 31 43 14 14 56 chain 20885 chr9 141213431 + 39175232 39175493 AluY 311 + 19 301 124336 106 1 2 94 0 20 60 chain 2925 chr9 141213431 + 39179350 39179382 MLT2D 439 + 398 430 226589 32 chain 170921 chr9 141213431 + 39202284 39204219 L1PA5 6144 + 4201 6143 21953 1481 0 2 319 0 4 124 1 2 10 chain 476564 chr9 141213431 + 39274400 39279951 L1PA4 6152 + 621 6151 7845 349 0 1 205 9 0 138 0 5 162 0 2 837 2 1 850 1 0 38 1 0 330 1 0 547 0 1 208 25 1 505 0 3 607 0 4 11 1 0 296 0 1 428 chain 11681 chr9 141213431 + 39296368 39296595 L1PA15 4387 + 4042 4297 153557 62 1 0 27 43 76 10 1 0 50 6 3 27 chain 39706 chr9 141213431 + 39304046 39304618 LTR43B 570 + 0 570 69746 232 2 0 42 12 11 20 40 41 224 chain 3056 chr9 141213431 + 39307466 39307852 L1MC2 1988 + 1594 1978 223877 34 331 329 21 chain 27697 chr9 141213431 + 39310118 39310429 AluYf4 310 - 0 310 94056 184 1 0 126 chain 108714 chr9 141213431 + 39318101 39319556 THE1C-int 1605 + 124 1599 34505 83 0 3 135 6 7 88 5 12 108 1 5 127 33 39 28 12 6 409 1 2 291 1 6 114 1 0 12 chain 4780 chr9 141213431 + 39327540 39327601 MER67D 511 - 391 452 197579 61 chain 28532 chr9 141213431 + 39338540 39338842 AluYb8 318 - 16 318 91043 302 chain 5064 chr9 141213431 + 39346435 39346506 THE1B 368 + 296 368 194501 14 1 2 56 chain 29322 chr9 141213431 + 39349864 39350175 AluYa5 310 + 0 310 87419 123 1 0 187 chain 31094 chr9 141213431 + 39372291 39372628 L1PA3long 6157 - 1 338 82352 337 chain 19743 chr9 141213431 + 39387029 39387290 AluY 311 + 0 261 127973 47 13 19 52 7 0 14 0 1 128 chain 112899 chr9 141213431 + 39399611 39401516 L1PA13 3608 + 1904 3485 33402 48 1 8 54 0 2 8 11 11 371 22 16 505 1 2 192 8 7 32 1 0 52 0 1 60 317 0 62 1 0 27 1 0 27 1 0 6 3 1 48 16 12 10 1 0 19 chain 40310 chr9 141213431 + 39424631 39425170 MLT2A2 560 + 0 560 68867 388 1 2 7 1 0 5 0 11 57 9 15 65 0 4 6 chain 493353 chr9 141213431 + 39425647 39431428 L1PA5 6144 + 0 6122 7208 122 0 15 676 24 356 1229 0 1 158 0 2 7 40 0 653 0 4 740 0 1 74 0 22 1286 1 2 605 4 8 124 1 0 37 chain 4746 chr9 141213431 + 39466714 39466768 MSTA-int 1630 + 14 68 197966 54 chain 20332 chr9 141213431 + 39487663 39487936 AluSp 311 + 11 290 126129 22 0 4 67 0 1 154 12 13 18 chain 25073 chr9 141213431 + 39495136 39495433 AluY 311 + 6 304 104442 125 1 2 171 chain 23419 chr9 141213431 + 39504729 39505018 AluY 311 + 0 288 113543 62 3 0 70 0 1 18 1 2 135 chain 32247 chr9 141213431 + 39508853 39509336 LTR12F 595 + 0 595 80446 76 0 119 15 14 5 70 3 4 106 35 36 164 chain 28707 chr9 141213431 + 39528253 39528559 AluYa5 310 - 7 310 90307 177 3 0 126 chain 25289 chr9 141213431 + 39528927 39529225 AluYf4 310 + 0 299 103278 117 3 1 5 0 3 173 chain 21184 chr9 141213431 + 39531488 39532106 THE1B 368 + 0 368 123260 44 0 6 8 0 9 105 1 0 8 266 5 15 4 0 53 43 42 5 0 2 66 chain 12936 chr9 141213431 + 39531657 39531866 L1PA8 5853 + 5648 5853 148477 31 2 0 9 6 7 45 2 1 10 1 0 9 2 1 92 chain 31093 chr9 141213431 + 39532106 39532481 THE1B-int 1605 + 0 375 82358 375 chain 16150 chr9 141213431 + 39546793 39547163 THE1B 368 + 0 368 137899 82 64 57 38 57 63 66 16 15 47 chain 41128 chr9 141213431 + 39561752 39562610 MER41A 554 + 0 554 67743 176 0 3 5 8 5 35 0 1 93 0 1 30 8 9 28 307 0 168 chain 4331 chr9 141213431 + 39574441 39574501 MER39 703 - 313 374 202822 20 1 2 39 chain 27238 chr9 141213431 + 39593260 39593560 AluYg6 310 + 0 298 95469 127 2 0 171 chain 28444 chr9 141213431 + 39599627 39599927 AluYb8 318 - 17 317 91401 300 chain 29647 chr9 141213431 + 39632884 39633203 AluYb9 318 - 0 318 86083 192 1 0 126 chain 28892 chr9 141213431 + 39636802 39637106 AluYa5 310 - 6 310 89488 304 chain 43478 chr9 141213431 + 39647725 39648263 MLT2A2 560 + 3 560 64838 137 0 1 32 0 12 18 0 1 9 1 2 335 0 4 6 chain 171077 chr9 141213431 + 39731584 39733524 L1PA5 6144 + 4196 6143 21933 1486 0 2 319 0 4 124 1 2 10 chain 476836 chr9 141213431 + 39803647 39809201 L1PA4 6152 + 621 6151 7835 349 0 1 205 9 0 138 0 5 162 0 2 837 2 1 850 1 0 38 1 0 330 1 0 547 0 1 208 25 1 1115 0 4 11 1 0 298 0 1 426 chain 39706 chr9 141213431 + 39833291 39833863 LTR43B 570 + 0 570 69745 232 2 0 42 12 11 20 40 41 224 chain 3056 chr9 141213431 + 39836711 39837097 L1MC2 1988 + 1594 1978 223876 34 331 329 21 chain 27902 chr9 141213431 + 39839363 39839674 AluYf4 310 - 0 310 93361 184 1 0 126 chain 111599 chr9 141213431 + 39847347 39848802 THE1C-int 1605 + 124 1599 33779 83 0 3 135 6 7 88 5 12 108 1 5 127 6 12 48 6 0 422 1 2 291 1 6 114 1 0 12 chain 4780 chr9 141213431 + 39856786 39856847 MER67D 511 - 391 452 197578 61 chain 28532 chr9 141213431 + 39867788 39868090 AluYb8 318 - 16 318 91042 302 chain 5064 chr9 141213431 + 39875689 39875760 THE1B 368 + 296 368 194500 14 1 2 56 chain 29322 chr9 141213431 + 39879118 39879429 AluYa5 310 + 0 310 87418 123 1 0 187 chain 31094 chr9 141213431 + 39901575 39901912 L1PA3long 6157 - 1 338 82351 337 chain 20005 chr9 141213431 + 39916329 39916590 AluY 311 + 0 261 127128 47 13 19 52 7 0 14 0 1 128 chain 110120 chr9 141213431 + 39928903 39930807 L1PA13 3608 + 1904 3485 34176 48 1 8 51 0 2 11 11 11 162 15 15 22 5 6 166 22 16 505 1 2 192 8 7 32 1 0 52 0 1 60 317 0 62 1 0 27 1 0 27 1 0 6 3 1 48 16 12 10 1 0 19 chain 40188 chr9 141213431 + 39953873 39954412 MLT2A2 560 + 0 560 69050 388 1 2 7 1 0 5 0 11 57 9 15 65 0 4 6 chain 493679 chr9 141213431 + 39954889 39960670 L1PA5 6144 + 0 6122 7191 122 0 15 676 24 356 1229 0 1 158 0 2 7 40 0 651 0 4 742 0 1 74 0 22 1286 1 2 605 4 8 124 1 0 37 chain 25379 chr9 141213431 + 40039927 40040239 AluY 311 + 0 296 102785 126 16 0 170 chain 115257 chr9 141213431 + 40059787 40061167 LTR12C 1709 + 0 1700 32697 104 6 7 681 9 325 107 0 4 375 8 7 90 chain 3909 chr9 141213431 + 40080173 40080223 MSTA 426 + 376 426 208716 50 chain 22340 chr9 141213431 + 40102119 40102416 AluY 311 + 8 303 118743 12 0 5 101 4 5 136 6 0 21 2 0 15 chain 13581 chr9 141213431 + 40116477 40116690 L1PA8 5853 + 5638 5847 146048 39 1 0 16 8 7 40 2 1 19 14 13 74 chain 29502 chr9 141213431 + 40122298 40122614 AluYb8 318 + 1 318 86632 107 0 1 209 chain 43741 chr9 141213431 + 40143014 40143520 MER9a2 513 + 0 513 64517 427 0 7 79 chain 29238 chr9 141213431 + 40146805 40147191 LTR7 482 + 0 468 87856 86 0 50 88 7 39 42 0 1 8 1 0 154 chain 3726 chr9 141213431 + 40151258 40151324 MER39 703 + 572 643 211531 17 11 16 38 chain 6099 chr9 141213431 + 40166363 40166439 MER20 218 + 0 76 184418 76 chain 54951 chr9 141213431 + 40168742 40169446 L1PA8 5853 + 5162 5853 55741 353 0 1 48 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 2 1 34 7 0 58 chain 9029 chr9 141213431 + 40175520 40175622 L1PA5 6144 + 5900 6002 165443 102 chain 11555 chr9 141213431 + 40175623 40175761 L1PA5 6144 + 6006 6144 154082 138 chain 6576 chr9 141213431 + 40179136 40179217 L1PA16 3655 - 237 318 180648 81 chain 24291 chr9 141213431 + 40179222 40179511 L1P4 1494 + 906 1195 108697 289 chain 3493 chr9 141213431 + 40195098 40195135 L1MB5 1630 + 1192 1229 215454 37 chain 7607 chr9 141213431 + 40204502 40205158 LTR12F 595 + 241 595 173502 19 24 0 22 507 229 84 chain 80736 chr9 141213431 + 40205179 40206191 HERV9-int 5642 + 0 1088 43293 593 14 11 110 3 0 82 2 1 51 4 2 78 0 85 75 chain 11716 chr9 141213431 + 40206209 40206349 LTR12F 595 + 445 585 153399 140 chain 34838 chr9 141213431 + 40206673 40207129 L1PA8 5853 + 5383 5853 76422 138 0 2 41 1 0 39 0 7 69 1 0 9 1 0 52 2 1 19 1 0 34 5 15 44 chain 20189 chr9 141213431 + 40211257 40211493 AluY 311 + 58 295 126560 68 0 1 168 chain 34394 chr9 141213431 + 40211535 40211911 L1PA2 6032 - 1 376 77069 15 1 0 360 chain 30171 chr9 141213431 + 40215092 40215408 AluYb8 318 - 2 318 84271 316 chain 88728 chr9 141213431 + 40285671 40286697 L1PA5 6144 - 14 1046 40099 55 11 13 764 1 5 195 chain 114733 chr9 141213431 + 40368509 40369889 LTR12C 1709 + 0 1700 32869 104 6 7 681 9 325 107 0 4 375 8 7 90 chain 3909 chr9 141213431 + 40388897 40388947 MSTA 426 + 376 426 208715 50 chain 21009 chr9 141213431 + 40410835 40411132 AluY 311 + 8 303 123877 12 0 5 101 18 19 122 6 0 21 2 0 15 chain 128437 chr9 141213431 + 40419365 40421269 L1PREC2 3366 + 136 2051 28468 34 17 14 15 72 62 22 14 13 109 6 34 29 1 0 43 4 7 70 0 2 123 0 1 97 0 1 34 1 0 392 0 1 32 14 15 24 1 0 29 0 1 17 0 1 231 17 3 380 0 2 15 16 17 45 chain 13495 chr9 141213431 + 40425191 40425404 L1PA8 5853 + 5638 5847 146370 39 1 0 16 8 7 44 1 0 4 1 0 4 0 1 7 14 13 74 chain 3207 chr9 141213431 + 40505037 40505072 MLT2D 439 + 398 433 220774 35 chain 490835 chr9 141213431 + 40541849 40547618 L1PA5 6144 + 395 6140 7325 774 77 0 134 0 1 504 0 1 488 0 1 7 2 1 192 0 2 175 0 2 80 0 36 110 0 4 257 2 1 119 0 1 645 1 2 14 0 1 1342 4 5 388 0 2 312 0 4 96 1 0 35 1 0 9 chain 396294 chr9 141213431 + 40620667 40626269 L1PA4 6152 + 6 6151 10227 92 873 1587 635 2 1 850 1 0 915 0 1 208 180 1 504 0 5 607 0 4 10 1 0 298 0 1 426 chain 39301 chr9 141213431 + 40649292 40649862 LTR43B 570 + 0 568 70320 232 2 0 42 12 11 20 40 41 222 chain 3056 chr9 141213431 + 40652392 40652778 L1MC2 1988 + 1594 1978 223875 34 331 329 21 chain 26418 chr9 141213431 + 40655039 40655333 AluYf4 310 - 17 310 98345 167 1 0 126 chain 110560 chr9 141213431 + 40663020 40664475 THE1C-int 1605 + 124 1599 34064 83 0 3 135 6 7 88 5 12 108 1 5 127 33 39 21 6 0 422 1 2 291 1 6 114 1 0 12 chain 5175 chr9 141213431 + 40672465 40672537 MER67B 652 - 429 500 193302 11 1 0 60 chain 29809 chr9 141213431 + 40683407 40683722 AluYb8 318 - 3 318 85408 315 chain 30588 chr9 141213431 + 40717015 40717352 L1PA3long 6157 - 1 338 83225 337 chain 115353 chr9 141213431 + 40744348 40746281 L1PA13 3608 + 1877 3485 32663 75 1 8 54 0 2 8 11 11 371 22 16 505 1 2 192 8 7 32 1 0 113 317 0 62 1 0 27 1 0 27 1 0 6 3 1 48 16 12 10 1 0 19 chain 22197 chr9 141213431 + 40751738 40752032 THE1B 368 - 69 368 119365 20 0 1 38 2 1 7 1 0 18 0 4 9 0 3 29 1 0 169 chain 4624 chr9 141213431 + 40794303 40794357 MSTA-int 1630 + 14 68 199369 54 chain 21191 chr9 141213431 + 40815184 40815461 AluSp 311 + 11 290 123235 93 0 1 154 12 13 18 chain 25306 chr9 141213431 + 40822662 40822963 AluY 311 + 6 308 103188 125 1 2 175 chain 23194 chr9 141213431 + 40832256 40832545 AluY 311 + 0 288 114698 62 3 0 70 0 1 18 1 2 135 chain 30618 chr9 141213431 + 40836380 40836839 LTR12F 595 + 0 571 83172 76 0 119 15 14 5 70 3 4 106 35 36 140 chain 28525 chr9 141213431 + 40855791 40856095 AluYa5 310 - 9 310 91078 175 3 0 126 chain 25653 chr9 141213431 + 40856463 40856765 AluYf4 310 + 0 303 101481 117 3 1 5 0 3 177 chain 21184 chr9 141213431 + 40859026 40859644 THE1B 368 + 0 368 123259 44 0 6 8 0 9 105 1 0 8 266 5 15 4 0 53 43 42 5 0 2 66 chain 12936 chr9 141213431 + 40859195 40859404 L1PA8 5853 + 5648 5853 148476 31 2 0 9 6 7 45 2 1 10 1 0 9 2 1 92 chain 30971 chr9 141213431 + 40859644 40860019 THE1B-int 1605 + 0 375 82563 375 chain 42797 chr9 141213431 + 40889608 40890472 MER41A 554 + 0 554 65663 225 0 1 92 0 1 30 8 9 28 313 0 168 chain 22827 chr9 141213431 + 40899054 40899412 LTR56 451 - 95 451 116461 14 7 12 38 8 9 147 2 6 39 1 0 81 11 0 10 chain 4331 chr9 141213431 + 40902303 40902363 MER39 703 - 313 374 202821 20 1 2 39 chain 12317 chr9 141213431 + 40996965 40997120 MER107 203 - 47 197 150955 8 5 0 142 chain 47380 chr9 141213431 + 41001680 41002230 L1PA4 6152 + 5604 6151 60912 80 6 2 57 0 1 407 chain 96076 chr9 141213431 + 41002476 41003665 L1P3 4156 + 0 1191 37799 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 303 6 18 248 chain 26280 chr9 141213431 + 41012397 41012702 AluY 311 + 0 300 98901 126 5 0 174 chain 9983 chr9 141213431 + 41028683 41028805 L1PA16 3655 + 1936 2057 160662 65 1 0 56 chain 28826 chr9 141213431 + 41035174 41035483 AluYk12 309 - 0 309 89781 309 chain 43450 chr9 141213431 + 41036339 41036877 MLT2A2 560 - 0 557 64872 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 29163 chr9 141213431 + 41038343 41038659 AluYb8 318 + 0 314 88236 47 0 1 75 3 0 191 chain 4105 chr9 141213431 + 41048662 41048730 L1MC 810 - 535 602 205865 27 1 0 28 2 0 5 0 2 5 chain 23971 chr9 141213431 + 41104046 41104334 AluY 311 + 0 284 110498 4 1 0 128 0 1 15 4 0 136 chain 4331 chr9 141213431 + 41109503 41109563 MER39 703 + 329 390 202819 39 1 2 20 chain 30558 chr9 141213431 + 41110893 41111211 AluYb8 318 + 0 318 83286 318 chain 42812 chr9 141213431 + 41121758 41122616 MER41A 554 - 0 554 65636 167 307 0 29 8 9 34 0 1 88 0 1 225 chain 14790 chr9 141213431 + 41122616 41122820 MER47A 366 - 66 259 141969 94 11 0 99 chain 9109 chr9 141213431 + 41126294 41126450 MSTB 430 - 20 181 165023 80 29 34 47 chain 17095 chr9 141213431 + 41137175 41137545 THE1B 368 - 0 368 135333 47 16 15 66 0 8 18 39 37 38 64 57 82 chain 3599 chr9 141213431 + 41138921 41138962 MER82 654 - 612 653 213661 41 chain 37470 chr9 141213431 + 41193214 41194010 MER41A 554 - 63 554 72857 104 308 0 29 8 9 34 0 1 88 0 1 225 chain 14790 chr9 141213431 + 41194010 41194214 MER47A 366 - 66 259 141968 94 11 0 99 chain 9109 chr9 141213431 + 41197688 41197844 MSTB 430 - 20 181 165022 80 29 34 47 chain 14312 chr9 141213431 + 41208576 41208946 THE1B 368 - 0 368 143521 47 16 15 66 159 158 82 chain 3599 chr9 141213431 + 41210315 41210356 MER82 654 - 612 653 213660 41 chain 29672 chr9 141213431 + 41217341 41217651 AluYa5 310 - 0 310 85934 310 chain 29579 chr9 141213431 + 41223907 41224283 THE1C-int 1605 - 1176 1605 86283 203 2 1 25 0 54 146 chain 13342 chr9 141213431 + 41224519 41224727 L1PA8 5853 - 0 205 146926 92 2 1 13 1 0 6 2 1 45 5 6 10 1 0 31 chain 6527 chr9 141213431 + 41224802 41224896 THE1C 375 - 266 375 181042 39 5 14 6 0 6 44 chain 25737 chr9 141213431 + 41239118 41239421 AluY 311 + 5 304 101128 121 4 0 178 chain 484685 chr9 141213431 + 41254815 41260588 L1PA5 6144 - 22 6144 7570 37 1 0 124 4 8 605 1 2 70 1 5 1211 0 22 74 0 1 742 7 11 142 2 1 468 53 0 33 0 15 153 0 1 969 0 2 257 24 356 560 1 5 114 1 15 119 chain 39661 chr9 141213431 + 41261065 41261603 MLT2A2 560 - 0 560 69812 6 0 4 65 9 15 57 14 25 152 0 1 235 chain 114687 chr9 141213431 + 41281518 41283450 L1PA13 3608 - 123 1731 32886 19 1 0 10 16 12 48 3 1 6 1 0 33 2 1 20 1 0 61 317 0 61 0 1 51 1 0 33 8 7 192 1 2 505 22 16 371 11 11 8 0 2 54 1 8 75 chain 30963 chr9 141213431 + 41310418 41310755 L1PA3long 6157 + 5819 6156 82578 337 chain 4768 chr9 141213431 + 41310797 41310851 MLT1B 390 + 336 390 197721 54 chain 4789 chr9 141213431 + 41355168 41355229 MER67D 511 + 59 120 197481 61 chain 110157 chr9 141213431 + 41363201 41364656 THE1C-int 1605 - 6 1481 34170 6 2 0 5 0 1 114 1 6 291 1 2 422 6 0 21 33 39 127 1 5 108 5 12 88 6 7 132 0 3 86 chain 21036 chr9 141213431 + 41421575 41421938 THE1B 368 + 0 368 123783 64 1 0 105 1 0 21 59 65 43 15 16 54 chain 39697 chr9 141213431 + 41449340 41449912 LTR43B 570 + 0 570 69758 232 2 0 42 12 11 20 40 41 224 chain 3056 chr9 141213431 + 41452443 41452829 L1MC2 1988 + 1594 1978 223874 34 331 329 21 chain 27489 chr9 141213431 + 41455088 41455396 AluYf4 310 - 3 310 94689 181 1 0 126 chain 109634 chr9 141213431 + 41463085 41464542 THE1C-int 1605 + 122 1599 34293 85 0 3 135 6 7 88 5 12 108 1 5 127 33 39 28 12 6 409 1 2 291 1 6 114 1 0 12 chain 5175 chr9 141213431 + 41472550 41472622 MER67B 652 - 429 500 193301 11 1 0 60 chain 28532 chr9 141213431 + 41483503 41483805 AluYb8 318 - 16 318 91041 302 chain 5064 chr9 141213431 + 41491400 41491471 THE1B 368 + 296 368 194499 14 1 2 56 chain 28898 chr9 141213431 + 41494829 41495134 AluYa5 310 + 0 304 89461 123 1 0 181 chain 19874 chr9 141213431 + 41532110 41532371 AluY 311 + 0 261 127577 47 13 19 52 7 0 14 0 1 128 chain 113001 chr9 141213431 + 41544691 41546596 L1PA13 3608 + 1904 3485 33377 48 1 8 54 0 2 8 11 11 371 22 16 505 1 2 192 8 7 32 1 0 52 0 1 60 317 0 62 1 0 27 1 0 27 1 0 6 3 1 48 16 12 10 1 0 19 chain 40188 chr9 141213431 + 41569649 41570188 MLT2A2 560 + 0 560 69049 388 1 2 7 1 0 5 0 11 57 9 15 65 0 4 6 chain 493484 chr9 141213431 + 41570665 41576446 L1PA5 6144 + 0 6122 7201 122 0 15 676 24 356 1229 0 1 158 0 2 7 40 0 651 0 4 742 0 1 74 0 22 1286 1 2 605 4 8 124 1 0 37 chain 23617 chr9 141213431 + 41599446 41599738 AluYk4 311 - 9 311 112489 15 2 0 136 1 13 138 chain 4746 chr9 141213431 + 41611732 41611786 MSTA-int 1630 + 14 68 197965 54 chain 20332 chr9 141213431 + 41632681 41632954 AluSp 311 + 11 290 126128 22 0 4 67 0 1 154 12 13 18 chain 25073 chr9 141213431 + 41640154 41640451 AluY 311 + 6 304 104441 125 1 2 171 chain 23419 chr9 141213431 + 41649744 41650033 AluY 311 + 0 288 113542 62 3 0 70 0 1 18 1 2 135 chain 32247 chr9 141213431 + 41653868 41654351 LTR12F 595 + 0 595 80445 76 0 119 15 14 5 70 3 4 106 35 36 164 chain 28798 chr9 141213431 + 41673266 41673573 AluYa5 310 - 6 310 89906 178 3 0 126 chain 25289 chr9 141213431 + 41673941 41674239 AluYf4 310 + 0 299 103277 117 3 1 5 0 3 173 chain 21184 chr9 141213431 + 41676502 41677120 THE1B 368 + 0 368 123258 44 0 6 8 0 9 105 1 0 8 266 5 15 4 0 53 43 42 5 0 2 66 chain 12936 chr9 141213431 + 41676671 41676880 L1PA8 5853 + 5648 5853 148475 31 2 0 9 6 7 45 2 1 10 1 0 9 2 1 92 chain 31093 chr9 141213431 + 41677120 41677495 THE1B-int 1605 + 0 375 82357 375 chain 16150 chr9 141213431 + 41691811 41692181 THE1B 368 + 0 368 137898 82 64 57 38 57 63 66 16 15 47 chain 9109 chr9 141213431 + 41702946 41703102 MSTB 430 + 249 410 165019 47 29 34 80 chain 42628 chr9 141213431 + 41706792 41707650 MER41A 554 + 0 554 65866 224 0 1 93 0 1 30 8 9 28 307 0 168 chain 4331 chr9 141213431 + 41719469 41719529 MER39 703 - 313 374 202820 20 1 2 39 chain 27329 chr9 141213431 + 41738295 41738596 AluYg6 310 + 0 299 95177 127 2 0 172 chain 28404 chr9 141213431 + 41744658 41744959 AluYb8 318 - 16 317 91560 301 chain 29036 chr9 141213431 + 41777926 41778235 AluYb9 318 - 10 318 88827 182 1 0 126 chain 28659 chr9 141213431 + 41781835 41782135 AluYa5 310 - 10 310 90487 300 chain 43572 chr9 141213431 + 41792752 41793290 MLT2A2 560 + 3 560 64718 137 0 1 32 0 12 18 0 1 9 1 2 335 0 4 6 chain 3370 chr9 141213431 + 41818773 41818881 MER3 215 + 55 182 217666 14 4 17 23 33 43 9 4 0 21 chain 9148 chr9 141213431 + 41821687 41821802 MER6C 202 - 41 156 164818 115 chain 98514 chr9 141213431 + 41825673 41826874 L1P3 4156 - 2965 4156 37155 569 11 9 185 1 0 25 0 2 81 1 0 69 1 0 187 7 0 64 chain 47389 chr9 141213431 + 41827120 41827670 L1PA4 6152 - 1 548 60909 409 0 1 55 6 2 80 chain 12317 chr9 141213431 + 41832231 41832386 MER107 203 + 6 156 150952 142 5 0 8 chain 39678 chr9 141213431 + 41848961 41849467 MER41C 542 + 27 542 69788 22 0 1 201 0 7 56 5 6 222 chain 16788 chr9 141213431 + 41849864 41850038 AluYb8 318 - 12 186 136139 174 chain 17644 chr9 141213431 + 41853230 41853503 Tigger5 388 - 24 281 133863 49 1 2 15 2 0 27 1 0 10 2 0 26 1 0 99 11 0 29 chain 25874 chr9 141213431 + 41880004 41880307 AluYf4 310 + 1 301 100552 131 3 0 169 chain 5400 chr9 141213431 + 41890036 41890209 MER52A 1651 - 1462 1651 190983 23 91 104 51 0 3 8 chain 28011 chr9 141213431 + 41902117 41902493 THE1C 375 - 0 375 92963 26 1 0 33 3 5 186 3 0 42 14 15 68 chain 19449 chr9 141213431 + 41903959 41904228 AluSc8 310 + 28 298 128824 88 0 1 10 3 0 6 0 3 9 3 0 7 5 8 138 chain 38272 chr9 141213431 + 41910663 41911503 L1PA8 5853 - 0 525 71748 93 310 0 19 2 1 24 3 5 24 2 0 8 2 1 70 2 0 43 2 1 236 chain 28579 chr9 141213431 + 41949835 41950211 THE1B 368 + 0 368 90824 172 4 3 72 8 1 120 chain 11083 chr9 141213431 + 41977985 41978133 THE1D-int 1627 + 93 247 155874 10 2 5 45 0 3 91 chain 21773 chr9 141213431 + 41980504 41980773 AluSc 308 + 20 290 121120 184 0 1 85 chain 69946 chr9 141213431 + 41980844 41981776 L1PA14 3548 + 656 1572 48413 38 2 0 156 1 0 468 19 0 139 2 3 25 4 5 19 0 4 59 chain 22626 chr9 141213431 + 41985667 41985938 AluSg7 307 - 25 297 117451 155 0 1 116 chain 28717 chr9 141213431 + 42004558 42005090 LTR12F 595 - 0 584 90269 165 25 28 6 0 1 6 14 0 28 1 13 67 27 0 30 24 0 32 27 128 80 chain 5223 chr9 141213431 + 42011362 42011567 L1MA9 1812 - 206 392 192798 26 2 1 11 5 3 25 94 68 15 1 0 4 0 11 22 chain 15655 chr9 141213431 + 42013568 42013932 THE1B 368 + 0 368 139415 111 4 5 15 123 128 47 15 13 49 chain 19095 chr9 141213431 + 42023788 42024043 THE1B 368 - 0 247 129828 120 8 1 72 4 3 51 chain 28809 chr9 141213431 + 42039101 42039404 AluYh9 303 - 0 303 89849 303 chain 70622 chr9 141213431 + 42041329 42042093 L1PA2 6032 - 3 767 48102 764 chain 39637 chr9 141213431 + 42042093 42042540 L1P1 4361 + 3549 3996 69840 447 chain 14786 chr9 141213431 + 42047272 42047465 L1PA8 5853 - 14 207 141985 79 1 0 19 2 1 5 0 3 50 1 0 36 chain 43684 chr9 141213431 + 42047465 42048050 L1PA7 6471 - 41 624 64588 107 0 18 7 20 6 17 15 0 37 1 5 18 0 5 363 chain 3609 chr9 141213431 + 42127762 42127848 MER45A 178 + 75 162 213497 27 33 34 26 chain 9165 chr9 141213431 + 42128031 42128133 SVA_F 1814 - 1 107 164734 10 0 4 92 chain 61899 chr9 141213431 + 42128134 42128791 SVA_F 1814 + 1044 1699 51945 133 1 0 5 1 0 517 chain 41808 chr9 141213431 + 42135534 42136151 L1PA8 5853 + 5234 5853 66884 85 0 2 90 1 0 4 10 5 95 2 3 35 4 10 6 0 3 36 2 0 69 3 2 13 1 0 48 2 3 22 1 0 88 chain 161646 chr9 141213431 + 42137218 42139235 L1PA7 6471 - 10 2047 23106 18 3 8 466 8 12 254 1 0 82 3 1 359 6 13 362 2 3 17 0 3 32 1 0 4 1 2 248 2 5 148 chain 29544 chr9 141213431 + 42141410 42141726 AluYb8 318 - 2 318 86439 316 chain 23648 chr9 141213431 + 42152452 42152725 AluYc 301 + 1 276 112317 119 0 2 154 chain 5141 chr9 141213431 + 42157034 42157105 MER67A 545 - 20 92 193662 43 3 4 25 chain 25014 chr9 141213431 + 42161775 42162042 L1HS 6032 - 0 267 104712 267 chain 25227 chr9 141213431 + 42164910 42165197 AluSp 311 + 8 295 103603 287 chain 29307 chr9 141213431 + 42170383 42170693 AluYa5 310 - 0 310 87532 310 chain 194041 chr9 141213431 + 42178618 42180743 L1PA3long 6157 + 4032 6157 19669 2125 chain 31060 chr9 141213431 + 42188657 42189114 LTR12F 595 - 0 595 82415 20 12 3 47 4 8 145 9 10 38 1 0 109 0 143 16 0 1 4 1 0 51 chain 29637 chr9 141213431 + 42204032 42204344 AluYb9 318 + 0 312 86106 312 chain 58530 chr9 141213431 + 42221505 42222212 L1PA7 6471 + 5758 6465 53681 707 chain 33697 chr9 141213431 + 42225039 42225536 MER4E1 777 - 26 460 78097 201 77 14 219 chain 3480 chr9 141213431 + 42260616 42260654 MSTA 426 - 370 408 215652 38 chain 17396 chr9 141213431 + 42266022 42266248 AluY 311 + 62 286 134519 69 0 2 115 5 1 37 chain 6523 chr9 141213431 + 42272505 42272583 L1PA8 5853 - 4 82 181064 78 chain 5470 chr9 141213431 + 42277683 42277781 L1MA3 4352 + 4240 4332 190295 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 43106 chr9 141213431 + 42286114 42286608 LTR15 485 + 0 485 65282 343 8 0 138 1 0 4 chain 19157 chr9 141213431 + 42289779 42290013 L1PA4 6152 + 5854 6095 129655 167 3 10 64 chain 205312 chr9 141213431 + 42291996 42294306 L1PA4 6152 - 0 2313 18837 208 0 3 2102 chain 37898 chr9 141213431 + 42307892 42308366 L1PA7 6471 - 6 474 72288 6 5 0 137 0 1 136 0 1 104 4 1 82 chain 76598 chr9 141213431 + 42320024 42321072 MER11C 1089 - 26 1089 45163 25 0 1 74 25 24 19 1 0 54 0 1 127 0 1 29 15 18 112 16 15 177 1 0 65 0 4 61 0 9 247 chain 21367 chr9 141213431 + 42326621 42326978 THE1D 372 - 13 372 122628 111 52 53 10 3 0 7 6 9 6 0 1 162 chain 3456 chr9 141213431 + 42329686 42329766 MER11A 1151 - 1006 1096 216081 27 29 39 24 chain 4340 chr9 141213431 + 42329776 42329826 MER11A 1151 - 1007 1057 202718 50 chain 17084 chr9 141213431 + 42345858 42346085 AluY 311 + 46 296 135365 8 0 3 75 0 1 18 10 25 89 0 4 27 chain 66866 chr9 141213431 + 42391644 42392411 L1PA5 6144 - 9 777 49701 140 6 7 621 chain 6232 chr9 141213431 + 42404657 42404745 L1PA5 6144 + 6057 6142 183300 57 0 2 19 5 0 7 chain 46792 chr9 141213431 + 42428104 42428645 L1PA4 6152 + 5601 6140 61376 365 2 0 174 chain 3239 chr9 141213431 + 42434760 42434798 L1MC4 1079 - 543 581 220240 38 chain 7055 chr9 141213431 + 42439949 42440168 MSTA-int 1630 + 1382 1605 177070 10 0 7 6 7 0 18 67 65 28 6 5 30 9 16 38 chain 5899 chr9 141213431 + 42440247 42440388 MSTA 426 + 57 189 186195 17 1 0 5 53 45 65 chain 5866 chr9 141213431 + 42463383 42463584 MSTA 426 + 158 366 186522 28 1 0 7 0 2 19 108 114 38 chain 75696 chr9 141213431 + 42483751 42484726 LTR5_Hs 974 + 0 974 45653 293 8 1 165 0 4 105 1 0 88 0 1 17 3 5 97 7 7 191 chain 24556 chr9 141213431 + 42512840 42513115 AluY 311 + 25 299 107216 152 1 0 122 chain 71665 chr9 141213431 + 42530489 42531617 L1PB1 5432 + 4339 5420 47623 82 0 1 221 5 6 40 1 0 95 32 32 287 30 14 17 1 0 13 2 1 8 2 0 3 2 0 8 2 0 53 2 1 16 2 1 43 1 0 15 3 0 6 16 6 19 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 chain 7067 chr9 141213431 + 42541824 42541904 MER45C 884 + 88 168 176966 80 chain 26923 chr9 141213431 + 42557321 42557640 AluYk4 311 + 0 303 96542 126 16 0 177 chain 20770 chr9 141213431 + 42564372 42564698 THE1B 368 + 14 368 124718 26 0 15 84 0 4 26 1 0 29 44 54 116 chain 30742 chr9 141213431 + 42564700 42565103 THE1B-int 1605 + 2 403 82966 13 0 2 10 11 6 132 0 1 237 chain 54151 chr9 141213431 + 42573441 42574037 L1PA3long 6157 + 5551 6147 56262 596 chain 108730 chr9 141213431 + 42581142 42582484 L1P3 4156 - 200 1518 34496 123 3 0 21 0 1 1040 49 27 106 chain 94291 chr9 141213431 + 42582484 42584082 L1PA7 6471 + 5065 6324 38203 178 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 1 0 94 18 22 17 349 0 19 2 0 3 2 0 248 1 2 36 2 3 76 0 1 170 2 3 14 chain 29052 chr9 141213431 + 42583170 42583504 L1PA4 6152 + 5813 6152 88751 328 0 5 6 chain 3558 chr9 141213431 + 42606555 42606595 LTR12C 1709 + 1021 1061 214368 40 chain 96191 chr9 141213431 + 42611329 42612371 L1PA2 6032 - 6 1048 37734 1042 chain 135121 chr9 141213431 + 42612371 42613841 L1PA2 6032 + 3503 4973 26990 1470 chain 9183 chr9 141213431 + 42613841 42613954 L1PA10 4194 + 1278 1391 163826 113 chain 4705 chr9 141213431 + 42665761 42665822 Tigger1 2417 - 54 115 198468 61 chain 543891 chr9 141213431 + 42690275 42696338 L1PA3long 6157 - 1 6153 2228 503 1 0 1293 0 2 3250 27 0 86 1 0 113 0 128 58 22 8 506 3 4 42 9 10 149 chain 9988 chr9 141213431 + 42705953 42706105 Tigger3c 601 + 373 520 160644 24 16 15 14 4 0 94 chain 334561 chr9 141213431 + 42706927 42711413 L1PB1 5432 + 59 5419 12036 81 1 0 260 2 1 99 0 7 34 7 4 382 0 2 101 0 9 193 0 1 16 9 17 26 0 1 111 13 0 331 2 1 39 1 3 254 0 1 55 1 0 99 0 6 53 1 0 6 7 8 30 0 2 82 0 4 43 0 11 19 0 9 33 7 0 89 0 3 26 0 3 49 0 1 108 0 4 65 2 1 116 0 5 72 1 4 84 0 1 41 2 832 68 1 0 352 0 16 121 8 7 64 4 7 180 1 0 291 15 11 24 1 0 8 1 0 11 5 1 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 20307 chr9 141213431 + 42728937 42729269 THE1B 368 - 0 356 126217 18 3 0 5 1 4 91 42 52 29 1 0 110 0 15 32 chain 28950 chr9 141213431 + 42748081 42748416 L1PA5 6144 + 5796 6127 89218 92 1 0 114 3 0 125 chain 24173 chr9 141213431 + 42757144 42757491 MLT2A1 477 - 92 477 109362 13 19 27 40 0 25 106 1 5 26 0 1 142 chain 2599 chr9 141213431 + 42757526 42757558 MLT2A1 477 + 445 477 231708 32 chain 18053 chr9 141213431 + 42763813 42764030 L1PA7 6471 + 6248 6464 132719 60 1 0 156 chain 32007 chr9 141213431 + 42784516 42784883 L1PA5 6144 + 5777 6144 80853 367 chain 11234 chr9 141213431 + 42789786 42789950 L1MA5 2750 - 151 315 155287 13 0 4 7 6 2 4 0 1 4 1 0 129 chain 90451 chr9 141213431 + 42819738 42820781 L1PA3long 6157 - 808 1850 39485 884 3 2 156 chain 74572 chr9 141213431 + 42820782 42821605 L1PA3long 6157 + 5333 6156 46224 823 chain 220716 chr9 141213431 + 42838627 42841071 L1PA3long 6157 - 0 2444 17835 2444 chain 134946 chr9 141213431 + 42888071 42889541 L1PA2 6032 - 1059 2529 27022 1470 chain 95763 chr9 141213431 + 42889541 42890583 L1PA2 6032 + 4984 6026 37858 1042 chain 95879 chr9 141213431 + 42917837 42919437 L1PA7 6471 - 147 1406 37788 187 0 1 115 1 2 248 2 0 3 2 0 7 349 0 29 18 22 94 1 0 171 1 4 5 0 3 86 0 1 59 1 0 46 0 1 175 chain 29052 chr9 141213431 + 42918417 42918751 L1PA4 6152 - 0 339 88752 6 0 5 328 chain 107948 chr9 141213431 + 42919437 42920769 L1P3 4156 + 2638 3956 34734 106 47 35 1033 0 1 20 3 0 123 chain 54202 chr9 141213431 + 42927870 42928468 L1PA3long 6157 - 8 606 56232 598 chain 30734 chr9 141213431 + 42936806 42937209 THE1B-int 1605 - 1202 1603 82979 237 7 8 131 5 0 10 0 2 13 chain 27014 chr9 141213431 + 42944270 42944590 AluYk4 311 - 7 311 96241 172 16 0 132 chain 6939 chr9 141213431 + 42946514 42946605 MER2 342 - 115 206 177893 91 chain 7067 chr9 141213431 + 42960002 42960082 MER45C 884 - 716 796 176968 80 chain 73243 chr9 141213431 + 42970283 42971411 L1PB1 5432 - 12 1093 46907 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 1 0 42 2 1 16 2 1 53 2 0 8 2 0 3 2 0 8 2 1 9 1 0 21 30 14 287 32 32 95 1 0 40 5 6 221 0 1 82 chain 76002 chr9 141213431 + 43017185 43018160 LTR5_Hs 974 - 0 974 45478 191 7 7 97 3 5 17 0 1 85 1 0 109 0 4 170 8 1 287 chain 6494 chr9 141213431 + 43038316 43038517 MSTA 426 - 60 268 181303 38 12 26 9 5 0 15 67 64 19 0 2 7 1 0 28 chain 2568 chr9 141213431 + 43041571 43041634 MSTA 426 - 244 311 232238 26 22 26 15 chain 3602 chr9 141213431 + 43048208 43048249 MSTA 426 - 344 385 213612 41 chain 6429 chr9 141213431 + 43061733 43061844 MSTA-int 1630 - 25 142 181789 38 9 16 30 7 0 7 0 6 20 chain 46792 chr9 141213431 + 43073256 43073797 L1PA4 6152 - 12 551 61377 178 2 0 361 chain 8059 chr9 141213431 + 43088623 43088835 L1MB8 1703 + 1310 1523 170700 44 1 0 26 92 93 23 0 1 26 chain 6232 chr9 141213431 + 43097088 43097176 L1PA5 6144 - 2 87 183302 7 5 0 19 0 2 57 chain 66866 chr9 141213431 + 43109428 43110195 L1PA5 6144 + 5367 6135 49699 621 6 7 140 chain 5860 chr9 141213431 + 43115745 43115831 MER21A 919 - 23 106 186592 16 3 0 35 1 0 14 0 1 17 chain 5030 chr9 141213431 + 43171981 43172059 MER11A 1151 + 154 230 194832 45 5 3 28 chain 24026 chr9 141213431 + 43179851 43180142 AluY 311 + 25 300 110179 101 16 0 174 chain 78757 chr9 141213431 + 43180747 43181795 MER11C 1089 + 0 1063 44166 247 0 9 57 0 4 68 1 0 178 16 15 112 15 18 29 0 1 127 0 1 54 1 0 48 1 0 69 0 1 25 chain 35993 chr9 141213431 + 43193454 43193928 L1PA7 6471 + 5997 6465 74904 82 4 1 104 0 1 123 16 17 134 5 0 6 chain 205312 chr9 141213431 + 43207484 43209794 L1PA4 6152 + 3839 6152 18836 2102 0 3 208 chain 23747 chr9 141213431 + 43339334 43339635 AluSp 311 + 11 300 111790 278 12 0 11 chain 15787 chr9 141213431 + 43345681 43345949 Tigger5 388 + 107 364 138993 29 11 0 93 12 16 16 2 0 10 1 0 27 2 0 15 1 2 49 chain 39342 chr9 141213431 + 43349517 43350023 MER41C 542 - 0 515 70266 222 5 6 56 0 7 201 0 1 22 chain 28750 chr9 141213431 + 43357168 43357469 AluYa5 310 - 9 310 90118 301 chain 28935 chr9 141213431 + 43358949 43359251 AluYa8 305 - 3 305 89300 302 chain 3557 chr9 141213431 + 43366476 43366514 L1PA17 2846 - 153 191 214405 38 chain 15928 chr9 141213431 + 43368404 43368619 MER107 203 - 0 197 138587 30 3 0 11 15 0 156 chain 46436 chr9 141213431 + 43373174 43373728 L1PA4 6152 + 5604 6151 61648 75 20 12 52 0 1 407 chain 98778 chr9 141213431 + 43373974 43375175 L1P3 4156 + 0 1191 37080 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 28406 chr9 141213431 + 43406393 43406698 AluYk12 309 - 0 309 91555 30 0 4 275 chain 42974 chr9 141213431 + 43407555 43408093 MLT2A2 560 - 0 557 65447 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 4105 chr9 141213431 + 43419550 43419618 L1MC 810 - 535 602 205864 27 1 0 28 2 0 5 0 2 5 chain 5748 chr9 141213431 + 43453162 43453250 MER54B 801 - 696 783 187658 53 9 8 26 chain 46857 chr9 141213431 + 43454682 43455300 MER41B 635 - 0 635 61342 81 0 5 81 1 0 271 0 10 58 8 9 13 0 2 105 chain 2670 chr9 141213431 + 43469135 43469208 L1M3e 1964 + 743 1061 230769 18 6 0 7 15 266 27 chain 4331 chr9 141213431 + 43482923 43482983 MER39 703 + 329 390 202818 39 1 2 20 chain 29838 chr9 141213431 + 43484284 43484598 AluYb8 318 + 0 314 85319 314 chain 42615 chr9 141213431 + 43495113 43495973 MER41A 554 - 0 554 65879 167 309 0 29 8 9 34 0 1 89 0 1 224 chain 9109 chr9 141213431 + 43499672 43499828 MSTB 430 - 20 181 165021 80 29 34 47 chain 3599 chr9 141213431 + 43513938 43513979 MER82 654 - 612 653 213659 41 chain 5317 chr9 141213431 + 43516943 43517093 MER92C 513 - 199 306 191857 18 20 21 60 44 0 8 chain 29710 chr9 141213431 + 43527202 43527578 THE1C-int 1605 - 1176 1605 85797 203 2 1 25 0 54 146 chain 12653 chr9 141213431 + 43527814 43528022 L1PA8 5853 - 0 205 149633 39 0 1 4 1 0 48 2 1 13 1 0 6 2 1 45 5 6 10 1 0 31 chain 6527 chr9 141213431 + 43528097 43528191 THE1C 375 - 266 375 181041 39 5 14 6 0 6 44 chain 25606 chr9 141213431 + 43542404 43542707 AluY 311 + 5 304 101696 121 4 0 178 chain 485061 chr9 141213431 + 43558101 43563874 L1PA5 6144 - 22 6144 7556 37 1 0 124 4 8 605 1 2 70 1 5 1211 0 22 74 0 1 742 0 4 149 2 1 468 53 0 33 0 15 153 0 1 961 0 2 265 24 356 560 1 5 114 1 15 119 chain 39661 chr9 141213431 + 43564351 43564889 MLT2A2 560 - 0 560 69811 6 0 4 65 9 15 57 14 25 152 0 1 235 chain 24756 chr9 141213431 + 43579060 43579393 THE1B 368 + 0 338 106135 167 2 0 5 0 1 25 0 3 9 0 4 18 1 0 7 2 1 38 0 1 59 chain 111545 chr9 141213431 + 43584820 43586709 L1PA13 3608 - 123 1686 33798 19 1 0 10 16 12 48 3 1 6 1 0 33 3 1 20 1 0 61 317 0 113 1 0 33 8 7 195 0 1 503 22 16 139 0 4 6 4 0 222 11 11 8 0 2 54 1 8 30 chain 31011 chr9 141213431 + 43613702 43614039 L1PA3long 6157 + 5819 6156 82492 337 chain 4768 chr9 141213431 + 43614077 43614131 MLT1B 390 + 336 390 197720 54 chain 3056 chr9 141213431 + 43665925 43666311 L1MC2 1988 - 10 394 223878 21 331 329 34 chain 37959 chr9 141213431 + 43668852 43669407 LTR43B 570 - 0 555 72195 98 0 1 125 71 72 39 0 1 4 3 0 215 chain 11467 chr9 141213431 + 43676833 43677060 L1PA15 4387 - 90 345 154446 27 6 3 50 1 0 10 43 76 27 1 0 62 chain 396030 chr9 141213431 + 43693407 43699131 L1PA4 6152 - 1 6146 10240 112 0 1 315 0 1 296 1 0 11 0 4 606 2 7 502 304 1 210 0 1 728 0 1 190 1 0 844 2 1 635 873 1587 92 chain 4415 chr9 141213431 + 43744975 43745038 L1MB3 1562 + 1492 1555 201730 31 1 0 21 0 1 10 chain 23692 chr9 141213431 + 43757744 43758021 AluY 311 + 5 283 112068 127 0 1 150 chain 492040 chr9 141213431 + 43772147 43777924 L1PA5 6144 - 3 5747 7268 10 1 0 35 1 0 96 0 4 312 0 2 1735 0 1 14 1 2 645 0 1 126 1 0 251 0 4 112 0 36 78 0 2 175 0 2 192 2 1 7 0 1 488 0 1 507 0 1 130 85 0 773 chain 21324 chr9 141213431 + 43846861 43847224 THE1B 368 - 0 368 122780 54 15 16 43 59 65 21 1 0 105 1 0 64 chain 23576 chr9 141213431 + 43856336 43856625 AluY 311 + 9 295 112702 120 1 0 160 2 0 6 chain 10095 chr9 141213431 + 43858315 43858439 MER47A 366 + 124 248 160108 124 chain 89420 chr9 141213431 + 43868628 43869654 L1PA5 6144 - 14 1046 39836 55 11 13 764 1 5 195 chain 74449 chr9 141213431 + 44005137 44006112 LTR5_Hs 974 - 0 974 46301 191 7 7 97 8 10 12 0 1 85 1 0 109 0 4 170 11 4 284 chain 7123 chr9 141213431 + 44008561 44008650 MER30 238 + 137 232 176592 15 0 6 74 chain 4938 chr9 141213431 + 44027506 44027708 MSTA 426 - 60 268 195816 38 12 26 9 5 0 15 99 96 24 chain 6429 chr9 141213431 + 44045792 44045903 MSTA-int 1630 - 25 142 181788 38 9 16 30 7 0 7 0 6 20 chain 47949 chr9 141213431 + 44051441 44051958 L1PA2 6032 - 295 812 60522 517 chain 26903 chr9 141213431 + 44051958 44052250 L1PA2 6032 + 5740 6032 96616 292 chain 46213 chr9 141213431 + 44058148 44058698 L1PA4 6152 - 12 551 61837 178 2 0 37 9 0 324 chain 8254 chr9 141213431 + 44073570 44073782 L1MB8 1703 + 1310 1523 169657 44 1 0 28 90 91 23 0 1 26 chain 65840 chr9 141213431 + 44094456 44095223 L1PA5 6144 + 5367 6135 50172 110 0 1 4 2 1 183 0 1 468 chain 6741 chr9 141213431 + 44100756 44100855 MER21A 919 - 10 106 179387 29 3 0 35 1 0 14 0 1 17 chain 76485 chr9 141213431 + 44156917 44157963 MER11A 1151 + 0 1151 45220 79 7 15 136 0 4 58 0 11 229 0 13 137 6 9 12 1 2 40 0 4 65 0 27 20 0 32 69 0 1 31 7 8 54 0 1 28 8 7 59 chain 24112 chr9 141213431 + 44164850 44165140 AluY 311 + 25 300 109684 107 15 0 168 chain 28261 chr9 141213431 + 44191541 44191917 THE1C 375 - 1 375 92077 25 1 0 33 3 5 191 8 5 115 chain 35067 chr9 141213431 + 44193771 44194168 L1P1 4361 + 3933 4328 76092 217 1 0 155 1 0 23 chain 37655 chr9 141213431 + 44201464 44202307 L1PA8 5853 - 0 525 72612 93 313 0 11 13 12 21 3 5 24 2 0 8 2 1 70 2 0 43 2 1 236 chain 3452 chr9 141213431 + 44234232 44234276 MER52D 1964 - 816 859 216185 34 1 0 9 chain 2883 chr9 141213431 + 44234286 44234316 MER52D 1964 - 757 787 227324 30 chain 6834 chr9 141213431 + 44237229 44237330 MSTA-int 1630 + 0 100 178704 12 10 9 79 chain 17842 chr9 141213431 + 44251074 44251438 THE1B 368 - 0 368 133271 49 15 13 47 92 97 39 11 12 111 chain 174591 chr9 141213431 + 44281022 44284078 L1PA14 3548 - 63 2886 21528 19 1 0 8 11 5 39 17 16 8 1 0 12 4 2 33 5 1 11 1 0 51 4 5 32 16 1 13 16 15 77 1 0 6 2 0 13 13 9 5 0 1 96 13 9 14 11 10 21 10 5 9 3 1 22 1 2 185 6 5 19 0 144 25 14 14 174 6 4 136 7 5 59 1 0 173 2 0 86 16 14 15 0 3 236 2 0 6 348 41 43 8 12 25 0 3 27 2 3 11 14 13 114 19 0 470 1 0 187 chain 109484 chr9 141213431 + 44287599 44289058 THE1C-int 1605 - 6 1481 34322 12 1 0 30 0 2 82 1 6 79 5 1 97 1 0 538 6 0 48 1 2 5 0 5 127 1 5 108 5 12 88 6 7 132 0 3 86 chain 2823 chr9 141213431 + 44300312 44300355 MADE1 96 - 52 96 228414 17 3 4 23 chain 91095 chr9 141213431 + 44310301 44312068 L1PB 1623 + 98 1585 39265 4 1 0 10 1 0 5 1 0 52 4 1 18 7 4 76 2 1 103 2 0 27 1 0 69 28 7 303 20 22 189 5 6 302 293 79 37 2 1 37 122 93 10 3 0 21 2 0 10 chain 89028 chr9 141213431 + 44336450 44337664 L1PB 1623 - 326 1517 39989 307 0 1 189 16 19 323 20 0 59 2 1 26 2 0 103 2 1 76 7 4 20 0 2 49 1 0 5 1 0 6 chain 108640 chr9 141213431 + 44358855 44360314 THE1C-int 1605 + 124 1599 34527 83 0 3 135 6 7 88 5 12 108 1 5 127 0 5 5 1 2 55 12 6 525 1 0 97 5 1 79 1 6 82 0 2 30 1 0 12 chain 22885 chr9 141213431 + 44362768 44363062 AluY 311 + 5 298 116161 118 22 21 154 chain 174555 chr9 141213431 + 44363845 44366906 L1PA14 3548 + 662 3485 21533 187 1 0 469 19 0 115 14 13 11 2 3 27 0 3 25 8 12 43 353 41 6 2 0 236 0 3 15 16 14 86 2 0 173 1 0 59 7 5 136 6 4 174 14 14 25 0 144 19 6 5 185 1 2 22 3 1 9 10 5 21 11 10 14 13 9 96 0 1 4 14 10 13 2 0 6 1 0 77 16 15 13 16 1 32 4 5 51 1 0 11 5 1 36 4 2 9 1 0 8 17 16 39 11 5 8 1 0 19 chain 22412 chr9 141213431 + 44368518 44368789 AluSg7 307 - 25 297 118429 155 0 1 116 chain 15141 chr9 141213431 + 44396423 44396787 THE1B 368 + 0 368 140943 111 142 148 47 15 13 49 chain 2850 chr9 141213431 + 44429658 44429717 MER52C 1267 - 309 365 227857 17 1 0 11 12 10 18 chain 38164 chr9 141213431 + 44445331 44446161 L1PA8 5853 + 5336 5853 71896 228 2 1 43 2 0 70 2 1 8 2 0 24 3 5 24 2 1 19 308 0 93 chain 23377 chr9 141213431 + 44446178 44446446 AluY 311 + 0 286 113772 53 0 17 56 0 1 159 chain 28518 chr9 141213431 + 44454382 44454758 THE1C 375 + 0 374 91108 125 3 0 182 7 9 33 1 0 25 chain 16997 chr9 141213431 + 44467665 44467900 LTR8 732 - 3 245 135602 10 0 3 164 11 15 50 chain 23747 chr9 141213431 + 44498260 44498561 AluSp 311 + 11 300 111789 278 12 0 11 chain 15787 chr9 141213431 + 44504608 44504876 Tigger5 388 + 107 364 138992 29 11 0 93 12 16 16 2 0 10 1 0 27 2 0 15 1 2 49 chain 39342 chr9 141213431 + 44508445 44508951 MER41C 542 - 0 515 70265 222 5 6 56 0 7 201 0 1 22 chain 28750 chr9 141213431 + 44516081 44516382 AluYa5 310 - 9 310 90117 301 chain 28935 chr9 141213431 + 44517862 44518164 AluYa8 305 - 3 305 89299 302 chain 3557 chr9 141213431 + 44525404 44525442 L1PA17 2846 - 153 191 214404 38 chain 15928 chr9 141213431 + 44527332 44527547 MER107 203 - 0 197 138586 30 3 0 11 15 0 156 chain 46436 chr9 141213431 + 44532102 44532656 L1PA4 6152 + 5604 6151 61647 75 20 12 52 0 1 407 chain 98778 chr9 141213431 + 44532902 44534103 L1P3 4156 + 0 1191 37079 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 10114 chr9 141213431 + 44558840 44558962 L1PA16 3655 + 1936 2057 160023 65 1 0 56 chain 28513 chr9 141213431 + 44565333 44565640 AluYk12 309 - 2 309 91131 307 chain 43319 chr9 141213431 + 44566496 44567034 MLT2A2 560 - 0 557 65014 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 29752 chr9 141213431 + 44568500 44568821 AluYb8 318 + 0 318 85642 123 3 0 195 chain 4105 chr9 141213431 + 44578818 44578886 L1MC 810 - 535 602 205863 27 1 0 28 2 0 5 0 2 5 chain 23971 chr9 141213431 + 44634193 44634481 AluY 311 + 0 284 110497 4 1 0 128 0 1 15 4 0 136 chain 4331 chr9 141213431 + 44639641 44639701 MER39 703 + 329 390 202817 39 1 2 20 chain 30558 chr9 141213431 + 44641031 44641349 AluYb8 318 + 0 318 83285 318 chain 42933 chr9 141213431 + 44651884 44652743 MER41A 554 - 0 554 65499 167 308 0 29 8 9 34 0 1 88 0 1 225 chain 14790 chr9 141213431 + 44652743 44652947 MER47A 366 - 66 259 141967 94 11 0 99 chain 9109 chr9 141213431 + 44656421 44656577 MSTB 430 - 20 181 165020 80 29 34 47 chain 14312 chr9 141213431 + 44667309 44667679 THE1B 368 - 0 368 143520 47 16 15 66 159 158 82 chain 3599 chr9 141213431 + 44669048 44669089 MER82 654 - 612 653 213658 41 chain 29672 chr9 141213431 + 44676074 44676384 AluYa5 310 - 0 310 85933 310 chain 5969 chr9 141213431 + 44749801 44750003 MER83C 372 - 7 198 185528 70 117 106 15 chain 7247 chr9 141213431 + 44793658 44793747 L1MB8 1703 + 1468 1557 175785 89 chain 28198 chr9 141213431 + 44819988 44820358 THE1A 353 - 0 353 92316 62 17 1 180 1 0 110 chain 7510 chr9 141213431 + 44850226 44850330 HY1 111 + 6 111 174092 65 7 8 32 chain 28521 chr9 141213431 + 44899781 44900109 L1PA3long 6157 - 0 328 91096 328 chain 15714 chr9 141213431 + 44900109 44900284 L1PA3long 6157 + 5644 5819 139231 175 chain 121059 chr9 141213431 + 44968143 44969494 L1PA3long 6157 + 4805 6157 30674 1017 0 2 187 1 0 146 chain 34046 chr9 141213431 + 44979468 44979881 HERVH-int 3825 - 0 414 77555 106 7 8 300 chain 28804 chr9 141213431 + 45007510 45007817 L1PA2 6032 - 65 372 89872 307 chain 18625 chr9 141213431 + 45007817 45008020 L1PA2 6032 + 5469 5672 131151 203 chain 7510 chr9 141213431 + 45019793 45019897 HY1 111 - 0 105 174094 32 7 8 65 chain 30558 chr9 141213431 + 45023234 45023552 AluYb9 318 - 0 318 83325 318 chain 27161 chr9 141213431 + 45050498 45050868 THE1A 353 + 0 353 95719 110 1 0 194 25 9 40 chain 109544 chr9 141213431 + 45050868 45052438 THE1A-int 1579 + 0 1572 34309 632 96 98 19 38 39 403 5 6 4 1 0 166 1 0 205 chain 8888 chr9 141213431 + 45104934 45105098 LTR19A 502 + 102 502 166197 69 3 40 19 1 0 11 19 219 42 chain 5935 chr9 141213431 + 45120556 45120626 MER83C 372 + 295 365 185835 70 chain 535422 chr9 141213431 + 45139540 45145656 L1PA5 6144 + 0 6142 3531 36 0 1 1104 1 6 149 0 1 62 0 19 152 1 0 405 1 0 1240 0 1 89 0 4 407 5 0 203 1 0 509 1 0 16 0 1 240 0 1 1343 0 7 130 1 0 9 4 0 7 chain 112832 chr9 141213431 + 45153594 45154986 L1PA7 6471 - 19 1379 33429 11 1 2 129 8 0 69 1 0 471 15 5 131 4 0 9 0 1 4 1 0 204 1 0 60 9 0 264 chain 129699 chr9 141213431 + 45158315 45160861 L1PB2 3958 - 120 1950 28155 60 5 4 19 6 0 19 1 0 13 1 2 5 1 0 35 1 0 18 377 16 30 1 0 63 2 0 5 3 4 94 16 12 57 7 1 10 9 8 12 0 1 43 2 0 116 0 1 108 24 10 20 0 1 127 1 0 7 1 0 354 1 2 80 2 0 7 0 3 12 320 0 451 chain 103206 chr9 141213431 + 45160862 45162344 L1PB2 3958 + 482 1962 35947 280 15 14 30 3 5 101 1 0 4 17 18 63 1 0 4 0 2 219 5 6 27 0 1 56 0 1 30 9 14 225 13 1 15 8 6 51 1 0 137 1 4 166 chain 6450 chr9 141213431 + 45202516 45202852 MLT1C 463 + 73 406 181639 51 6 0 13 91 82 27 126 138 22 chain 29335 chr9 141213431 + 45204563 45204869 AluYb8 318 - 12 318 87375 306 chain 28065 chr9 141213431 + 45218205 45218521 AluYa5 310 - 0 310 92771 77 6 0 233 chain 22306 chr9 141213431 + 45364462 45364731 L1PA6 6164 - 5 274 118889 269 chain 30187 chr9 141213431 + 45378484 45378829 L1PA5 6144 - 4 349 84228 345 chain 38020 chr9 141213431 + 45383622 45384096 L1PA7 6471 + 5997 6465 72098 82 4 1 104 0 1 136 0 1 137 5 0 6 chain 205595 chr9 141213431 + 45397640 45399950 L1PA4 6152 + 3839 6152 18818 2102 0 3 208 chain 20403 chr9 141213431 + 45401933 45402169 L1PA3long 6157 - 56 292 125887 236 chain 43237 chr9 141213431 + 45405296 45405790 LTR15 485 - 0 485 65130 4 1 0 138 8 0 343 chain 5470 chr9 141213431 + 45414124 45414222 L1MA3 4352 - 20 112 190297 4 1 0 11 1 0 29 1 0 6 1 0 24 6 4 14 chain 6523 chr9 141213431 + 45419321 45419399 L1PA8 5853 + 5771 5849 181063 78 chain 33638 chr9 141213431 + 45467994 45468488 MER4E1 777 + 317 748 78191 219 77 14 198 chain 57498 chr9 141213431 + 45471322 45472029 L1PA7 6471 - 6 713 54240 707 chain 3080 chr9 141213431 + 45479764 45479798 L1MA6 2487 - 112 146 223322 34 chain 29857 chr9 141213431 + 45504161 45504594 LTR12F 595 + 0 595 85257 72 0 167 85 1 0 38 9 10 144 5 9 42 9 0 28 chain 193910 chr9 141213431 + 45512539 45514664 L1PA3long 6157 - 0 2125 19689 2125 chain 25318 chr9 141213431 + 45527782 45528070 AluSp 311 - 15 303 103132 288 chain 5141 chr9 141213431 + 45535573 45535644 MER67A 545 + 453 525 193660 25 3 4 43 chain 163483 chr9 141213431 + 45553127 45555162 L1PA7 6471 + 4424 6469 22879 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 82 1 0 254 8 12 492 5 0 8 chain 41796 chr9 141213431 + 45556236 45556839 L1PA8 5853 - 14 619 66906 79 1 0 17 2 3 48 1 0 13 3 2 69 2 0 36 0 3 6 4 10 35 2 3 104 6 0 90 0 2 85 chain 221748 chr9 141213431 + 45635180 45637623 L1PA3long 6157 + 3709 6152 17769 2443 chain 28485 chr9 141213431 + 45639435 45639744 AluYa5 310 - 2 310 91242 182 1 0 126 chain 45265 chr9 141213431 + 45646410 45646980 L1PA7 6471 + 5847 6430 62751 360 0 5 21 1 5 54 14 18 120 chain 14068 chr9 141213431 + 45646980 45647169 L1PA8 5853 + 5646 5835 144323 36 1 0 50 0 3 5 2 1 19 1 0 75 chain 39822 chr9 141213431 + 45651908 45652355 L1P1 4361 - 365 812 69589 447 chain 69739 chr9 141213431 + 45652355 45653116 L1PA2 6032 + 5265 6026 48499 761 chain 25231 chr9 141213431 + 45678086 45678356 AluYb9 318 + 0 300 103582 154 0 30 116 chain 12119 chr9 141213431 + 45679318 45679463 L1PA6 6164 + 6017 6162 151742 145 chain 18557 chr9 141213431 + 45685990 45686253 AluY 311 + 10 294 131340 36 5 32 55 12 6 155 chain 120875 chr9 141213431 + 45704934 45706284 L1PA3long 6157 + 4805 6157 30737 1006 7 9 337 chain 33793 chr9 141213431 + 45716257 45716670 HERVH-int 3825 - 0 414 77950 106 7 8 300 chain 3064 chr9 141213431 + 45718277 45718471 MER70-int 1005 + 41 225 223754 36 141 131 17 chain 3316 chr9 141213431 + 45742894 45742930 MER5B 177 - 50 86 218658 36 chain 28551 chr9 141213431 + 45742963 45743270 L1PA2 6032 - 65 372 90949 307 chain 18494 chr9 141213431 + 45743270 45743473 L1PA2 6032 + 5469 5672 131513 203 chain 7510 chr9 141213431 + 45755240 45755344 HY1 111 - 0 105 174093 32 7 8 65 chain 28163 chr9 141213431 + 45785251 45785621 THE1A 353 + 0 353 92418 110 1 0 181 16 0 62 chain 3080 chr9 141213431 + 45866021 45866055 L1MA6 2487 - 112 146 223321 34 chain 29857 chr9 141213431 + 45890414 45890847 LTR12F 595 + 0 595 85256 72 0 167 85 1 0 38 9 10 144 5 9 42 9 0 28 chain 193949 chr9 141213431 + 45898780 45900905 L1PA3long 6157 - 0 2125 19684 2125 chain 25318 chr9 141213431 + 45914010 45914298 AluSp 311 - 15 303 103131 288 chain 5141 chr9 141213431 + 45921818 45921889 MER67A 545 + 453 525 193659 25 3 4 43 chain 163361 chr9 141213431 + 45939378 45941413 L1PA7 6471 + 4424 6469 22897 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 82 1 0 254 8 12 492 5 0 8 chain 41796 chr9 141213431 + 45942487 45943090 L1PA8 5853 - 14 619 66905 79 1 0 17 2 3 48 1 0 13 3 2 69 2 0 36 0 3 6 4 10 35 2 3 104 6 0 90 0 2 85 chain 19418 chr9 141213431 + 46018280 46018595 THE1B 368 + 10 345 128898 34 0 15 46 21 27 16 26 25 172 chain 221403 chr9 141213431 + 46021373 46023816 L1PA3long 6157 + 3709 6152 17788 2443 chain 29006 chr9 141213431 + 46025628 46025935 AluYa5 310 - 3 310 88957 307 chain 44929 chr9 141213431 + 46032600 46033170 L1PA7 6471 + 5847 6430 63135 360 0 5 21 1 5 54 14 18 120 chain 14304 chr9 141213431 + 46033170 46033358 L1PA8 5853 + 5646 5834 143548 36 1 0 50 0 3 5 2 1 19 1 0 74 chain 39700 chr9 141213431 + 46038098 46038545 L1P1 4361 - 365 812 69754 447 chain 69983 chr9 141213431 + 46038545 46039306 L1PA2 6032 + 5265 6026 48398 761 chain 26300 chr9 141213431 + 46064261 46064545 AluYb9 318 + 0 314 98832 155 0 30 129 chain 12119 chr9 141213431 + 46065499 46065644 L1PA6 6164 + 6017 6162 151741 145 chain 18557 chr9 141213431 + 46072171 46072434 AluY 311 + 10 294 131339 36 5 32 55 12 6 155 chain 121116 chr9 141213431 + 46091105 46092456 L1PA3long 6157 + 4805 6157 30664 1013 0 2 191 1 0 146 chain 34053 chr9 141213431 + 46102443 46102856 HERVH-int 3825 - 0 414 77538 103 1 2 309 chain 3064 chr9 141213431 + 46104463 46104657 MER70-int 1005 + 41 225 223753 36 141 131 17 chain 34690 chr9 141213431 + 46129225 46129595 L1PA2 6032 - 2 372 76639 370 chain 11670 chr9 141213431 + 46129595 46129723 L1PA2 6032 + 5469 5597 153594 128 chain 7192 chr9 141213431 + 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100103 127 0 30 154 chain 161634 chr9 141213431 + 46567803 46569833 L1PA7 6471 + 4424 6469 23110 148 2 5 248 1 2 4 1 0 32 0 3 17 2 3 362 6 13 359 3 1 82 1 0 254 8 12 466 3 8 18 5 0 8 chain 41808 chr9 141213431 + 46570887 46571504 L1PA8 5853 - 0 619 66885 93 1 0 17 2 3 48 1 0 13 3 2 69 2 0 36 0 3 6 4 10 35 2 3 95 10 5 4 1 0 91 0 2 84 chain 61899 chr9 141213431 + 46578246 46578903 SVA_F 1814 - 115 770 51946 517 1 0 5 1 0 133 chain 9208 chr9 141213431 + 46578904 46579006 SVA_F 1814 + 1707 1811 164519 95 0 2 7 chain 45073 chr9 141213431 + 46658991 46659576 L1PA7 6471 + 5847 6430 62966 360 0 5 21 1 5 54 28 17 121 chain 14786 chr9 141213431 + 46659576 46659769 L1PA8 5853 + 5646 5839 141983 36 1 0 50 0 3 5 2 1 19 1 0 79 chain 39637 chr9 141213431 + 46664501 46664948 L1P1 4361 - 365 812 69841 447 chain 70622 chr9 141213431 + 46664948 46665712 L1PA2 6032 + 5265 6029 48100 764 chain 18890 chr9 141213431 + 46683000 46683255 THE1B 368 + 121 368 130393 51 4 3 72 8 1 120 chain 174665 chr9 141213431 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297 116607 118 22 21 153 chain 174566 chr9 141213431 + 46805754 46808816 L1PA14 3548 + 662 3485 21531 187 1 0 469 19 0 115 14 13 11 2 3 27 0 3 25 8 12 43 354 41 6 2 0 236 0 3 15 16 14 86 2 0 173 1 0 59 7 5 136 6 4 174 14 14 25 0 144 19 6 5 185 1 2 22 3 1 9 10 5 21 11 10 14 13 9 96 0 1 5 13 9 13 2 0 6 1 0 77 16 15 13 16 1 32 4 5 51 1 0 11 5 1 36 4 2 9 1 0 8 17 16 39 11 5 8 1 0 19 chain 28717 chr9 141213431 + 46829312 46829844 LTR12F 595 - 0 584 90268 165 25 28 6 0 1 6 14 0 28 1 13 67 27 0 30 24 0 32 27 128 80 chain 2850 chr9 141213431 + 46871586 46871645 MER52C 1267 - 309 365 227856 17 1 0 11 12 10 18 chain 37854 chr9 141213431 + 46887227 46888066 L1PA8 5853 + 5328 5853 72339 236 2 1 43 2 0 70 2 1 8 2 0 24 3 5 24 2 1 19 309 0 93 chain 28998 chr9 141213431 + 46896237 46896614 THE1C 375 + 0 375 88993 115 8 5 191 3 5 34 1 0 25 chain 24414 chr9 141213431 + 46924838 46925118 AluSc 308 - 15 295 108005 280 chain 17644 chr9 141213431 + 46945232 46945505 Tigger5 388 + 107 364 133862 29 11 0 99 1 0 26 2 0 10 1 0 27 2 0 15 1 2 49 chain 22579 chr9 141213431 + 46948364 46948672 AluY 311 + 11 299 117672 115 16 0 134 19 15 24 chain 16788 chr9 141213431 + 46948697 46948871 AluYb8 318 + 132 306 136138 174 chain 39678 chr9 141213431 + 46949268 46949774 MER41C 542 - 0 515 69790 222 5 6 56 0 7 201 0 1 22 chain 12317 chr9 141213431 + 46966364 46966519 MER107 203 - 47 197 150954 8 5 0 142 chain 47380 chr9 141213431 + 46971079 46971629 L1PA4 6152 + 5604 6151 60911 80 6 2 57 0 1 407 chain 98420 chr9 141213431 + 46971875 46973076 L1P3 4156 + 0 1191 37185 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 25426 chr9 141213431 + 46987542 46987827 AluYc 301 + 2 287 102565 285 chain 43703 chr9 141213431 + 47005465 47006003 MLT2A2 560 - 0 557 64563 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 4105 chr9 141213431 + 47017797 47017865 L1MC 810 - 535 602 205862 27 1 0 28 2 0 5 0 2 5 chain 29986 chr9 141213431 + 47020523 47020841 AluYb9 318 + 0 317 84853 132 1 0 185 chain 5748 chr9 141213431 + 47048840 47048928 MER54B 801 - 696 783 187657 53 9 8 26 chain 28819 chr9 141213431 + 47053765 47054072 AluYb8 318 + 1 308 89806 307 chain 7599 chr9 141213431 + 47162147 47162250 LTR19A 502 + 102 241 173554 71 0 37 20 1 0 11 chain 5935 chr9 141213431 + 47178599 47178669 MER83C 372 + 295 365 185834 70 chain 3670 chr9 141213431 + 47178761 47178805 MIRb 242 - 130 174 212385 44 chain 16402 chr9 141213431 + 47199628 47199827 AluSc5 308 + 3 203 137204 115 0 1 84 chain 13399 chr9 141213431 + 47214805 47215016 L1PA8 5853 - 6 213 146724 74 14 13 19 2 1 40 8 7 16 1 0 37 chain 24251 chr9 141213431 + 47240211 47240507 AluSp 311 + 0 291 108938 122 5 0 169 chain 139352 chr9 141213431 + 47266715 47268502 LTR12C 1709 - 0 1709 26240 230 0 3 248 0 4 107 3 1 5 1 0 19 123 0 215 0 40 732 0 1 104 chain 8870 chr9 141213431 + 47267344 47267451 LTR12C 1709 - 629 777 80301 25 0 41 82 chain 5890 chr9 141213431 + 47288920 47289003 L1PB4 2604 + 1869 1959 186280 28 1 8 54 chain 23442 chr9 141213431 + 47302927 47303197 AluY 311 + 16 288 113416 116 0 2 154 chain 30963 chr9 141213431 + 65492605 65492942 L1PA3long 6157 + 5819 6156 82577 337 chain 4768 chr9 141213431 + 65492984 65493038 MLT1B 390 + 336 390 197719 54 chain 110157 chr9 141213431 + 65545455 65546910 THE1C-int 1605 - 6 1481 34169 6 2 0 5 0 1 114 1 6 291 1 2 422 6 0 21 33 39 127 1 5 108 5 12 88 6 7 132 0 3 86 chain 4718 chr9 141213431 + 65554504 65554564 THE1B 368 - 92 151 198309 46 1 0 13 chain 27498 chr9 141213431 + 65554609 65554917 AluYf4 310 + 0 307 94660 132 1 0 175 chain 28972 chr9 141213431 + 65558285 65558591 AluYa5 310 - 4 310 89124 306 chain 38585 chr9 141213431 + 65560412 65560969 LTR43B 570 - 0 555 71315 224 40 41 20 12 11 39 0 1 4 3 0 215 chain 21036 chr9 141213431 + 65588421 65588784 THE1B 368 - 0 368 123784 54 15 16 43 59 65 21 1 0 105 1 0 64 chain 23527 chr9 141213431 + 65597912 65598206 AluY 311 + 9 300 112970 124 1 0 156 2 0 11 chain 9973 chr9 141213431 + 65599912 65600036 MER47A 366 + 124 248 160712 124 chain 88097 chr9 141213431 + 65610233 65611259 L1PA5 6144 - 14 1046 40335 55 13 15 762 1 5 195 chain 25412 chr9 141213431 + 65673181 65673493 AluY 311 + 0 297 102622 131 15 0 166 chain 139361 chr9 141213431 + 65692998 65694785 LTR12C 1709 + 0 1709 26239 104 0 1 707 0 40 224 123 0 35 1 0 5 3 1 107 0 4 248 0 3 230 chain 9864 chr9 141213431 + 65694033 65694152 LTR12C 1709 + 916 1076 80872 38 0 41 81 chain 3909 chr9 141213431 + 65711722 65711772 MSTA 426 + 376 426 208714 50 chain 23138 chr9 141213431 + 65732135 65732435 AluY 311 + 8 308 114945 12 0 5 104 1 2 136 6 0 41 chain 13581 chr9 141213431 + 65746472 65746685 L1PA8 5853 + 5638 5847 146047 39 1 0 16 8 7 40 2 1 19 14 13 74 chain 29173 chr9 141213431 + 65752292 65752599 AluYb8 318 + 1 308 88185 307 chain 43883 chr9 141213431 + 65772652 65773158 MER9a2 513 + 0 513 64352 427 0 7 79 chain 29369 chr9 141213431 + 65776444 65776830 LTR7 482 + 0 468 87203 86 0 50 88 7 39 42 0 1 8 1 0 154 chain 3726 chr9 141213431 + 65780893 65780959 MER39 703 + 572 643 211530 17 11 16 38 chain 6099 chr9 141213431 + 65796048 65796124 MER20 218 + 0 76 184417 76 chain 54951 chr9 141213431 + 65798427 65799131 L1PA8 5853 + 5162 5853 55740 353 0 1 48 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 2 1 34 7 0 58 chain 19911 chr9 141213431 + 65805211 65805452 L1PA5 6144 + 5900 6144 127436 102 1 4 138 chain 6576 chr9 141213431 + 65808815 65808896 L1PA16 3655 - 237 318 180647 81 chain 24291 chr9 141213431 + 65808901 65809190 L1P4 1494 + 906 1195 108696 289 chain 3493 chr9 141213431 + 65824775 65824812 L1MB5 1630 + 1192 1229 215453 37 chain 32513 chr9 141213431 + 65834045 65834852 LTR12F 595 + 0 595 80000 103 0 1 31 4 0 7 15 83 10 24 0 51 0 64 161 317 0 84 chain 80849 chr9 141213431 + 65834873 65835885 HERV9-int 5642 + 0 1088 43245 593 14 11 112 3 0 80 2 1 51 4 2 78 0 85 75 chain 11716 chr9 141213431 + 65835903 65836043 LTR12F 595 + 445 585 153401 140 chain 34838 chr9 141213431 + 65836367 65836823 L1PA8 5853 + 5383 5853 76421 138 0 2 41 1 0 39 0 7 69 1 0 9 1 0 52 2 1 19 1 0 34 5 15 44 chain 20095 chr9 141213431 + 65840955 65841191 AluY 311 + 58 295 126844 68 0 1 168 chain 34394 chr9 141213431 + 65841233 65841609 L1PA2 6032 - 1 376 77068 15 1 0 360 chain 5831 chr9 141213431 + 65867001 65867091 L1MA8 2339 + 2174 2256 186852 22 6 0 40 2 0 20 chain 21824 chr9 141213431 + 65878750 65879006 AluY 311 + 27 284 120925 105 0 1 151 chain 29204 chr9 141213431 + 65888160 65888466 AluYb8 318 + 0 306 88025 306 chain 30336 chr9 141213431 + 65906806 65907123 AluYb8 318 - 1 318 83819 317 chain 5400 chr9 141213431 + 65969156 65969329 MER52A 1651 + 0 189 190982 13 0 3 46 91 104 23 chain 24395 chr9 141213431 + 65972049 65972520 LTR19A 502 + 0 496 108108 33 6 5 18 9 4 93 11 0 31 1 75 16 44 6 69 0 8 72 39 37 29 chain 24536 chr9 141213431 + 65985467 65985747 AluSc 308 - 15 295 107332 280 chain 17439 chr9 141213431 + 66005855 66006128 Tigger5 388 + 107 364 134409 29 11 0 99 1 0 26 2 0 10 1 0 27 2 0 15 1 2 49 chain 22536 chr9 141213431 + 66008987 66009297 AluY 311 + 11 300 117864 115 17 0 134 19 15 25 chain 17545 chr9 141213431 + 66009322 66009507 AluYb8 318 + 132 317 134143 185 chain 39678 chr9 141213431 + 66009894 66010400 MER41C 542 - 0 515 69789 222 5 6 56 0 7 201 0 1 22 chain 12317 chr9 141213431 + 66027000 66027155 MER107 203 - 47 197 150953 8 5 0 142 chain 47511 chr9 141213431 + 66031715 66032265 L1PA4 6152 + 5604 6151 60835 80 6 2 57 0 1 407 chain 98645 chr9 141213431 + 66032511 66033712 L1P3 4156 + 0 1191 37113 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 25474 chr9 141213431 + 66048176 66048464 AluYc 301 + 2 290 102338 288 chain 10114 chr9 141213431 + 66058719 66058841 L1PA16 3655 + 1936 2057 160022 65 1 0 56 chain 43572 chr9 141213431 + 66066096 66066634 MLT2A2 560 - 0 557 64719 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 4105 chr9 141213431 + 66078424 66078492 L1MC 810 - 535 602 205861 27 1 0 28 2 0 5 0 2 5 chain 29400 chr9 141213431 + 66081159 66081472 AluYb9 318 + 0 312 87078 132 1 0 180 chain 10609 chr9 141213431 + 66087164 66087300 L1PB4 2604 + 2386 2522 157779 136 chain 4331 chr9 141213431 + 66127913 66127973 MER39 703 + 329 390 202816 39 1 2 20 chain 42931 chr9 141213431 + 66139807 66140668 MER41A 554 - 0 554 65501 167 310 0 29 8 9 34 0 1 88 0 1 225 chain 14790 chr9 141213431 + 66140668 66140872 MER47A 366 - 66 259 141966 94 11 0 99 chain 8987 chr9 141213431 + 66144342 66144498 MSTB 430 - 20 181 165672 80 29 34 47 chain 14312 chr9 141213431 + 66155236 66155606 THE1B 368 - 0 368 143519 47 16 15 66 159 158 82 chain 3599 chr9 141213431 + 66156977 66157018 MER82 654 - 612 653 213657 41 chain 29026 chr9 141213431 + 66164004 66164307 AluYa5 310 - 7 310 88871 303 chain 30971 chr9 141213431 + 66170229 66170604 THE1B-int 1605 - 1230 1605 82564 375 chain 20802 chr9 141213431 + 66170604 66171222 THE1B 368 - 0 368 124593 66 0 2 5 43 42 51 2 0 10 2 0 7 266 5 8 1 0 105 0 9 8 0 6 44 chain 12711 chr9 141213431 + 66170844 66171053 L1PA8 5853 - 0 205 149414 92 2 1 13 1 0 6 2 1 45 6 7 9 2 0 31 chain 25653 chr9 141213431 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5432 - 12 1093 47344 16 1 0 13 1 0 21 1 0 24 2 0 10 12 9 30 14 1 15 1 0 43 2 1 18 1 0 52 2 0 8 2 0 3 2 0 8 2 1 9 1 0 21 31 15 286 32 32 95 1 0 40 5 6 221 0 1 82 chain 13098 chr9 141213431 + 66327005 66327408 L1MC2 1988 + 1453 1860 147852 31 206 213 98 1 0 55 2 0 10 chain 74327 chr9 141213431 + 66352575 66353550 LTR5_Hs 974 - 0 974 46348 191 7 7 97 8 10 12 0 1 85 1 0 109 0 4 170 11 4 284 chain 7123 chr9 141213431 + 66355999 66356088 MER30 238 + 137 232 176591 15 0 6 74 chain 4938 chr9 141213431 + 66374943 66375145 MSTA 426 - 60 268 195815 38 12 26 9 5 0 15 99 96 24 chain 6429 chr9 141213431 + 66393229 66393340 MSTA-int 1630 - 25 142 181787 38 9 16 30 7 0 7 0 6 20 chain 48080 chr9 141213431 + 66398878 66399395 L1PA2 6032 - 295 812 60416 517 chain 26903 chr9 141213431 + 66399395 66399687 L1PA2 6032 + 5740 6032 96615 292 chain 38491 chr9 141213431 + 66456674 66457129 LTR2 463 + 7 463 71450 374 0 1 81 chain 172248 chr9 141213431 + 66473939 66475921 L1PA4 6152 - 9 1993 21787 12 1 0 226 1 0 1246 0 1 29 1 0 271 6 10 189 chain 471148 chr9 141213431 + 66478273 66484275 L1PA6 6164 - 3 6150 7998 140 18 18 170 2 1 5 0 1 502 0 7 78 1 0 461 0 1 75 0 1 410 0 1 86 0 8 16 0 1 32 0 111 340 2 0 205 1 0 266 0 1 33 9 11 36 0 7 385 0 1 419 15 0 289 2 1 353 0 1 83 11 11 331 0 1 438 0 17 34 0 1 179 1 2 147 56 57 328 5 7 38 chain 22437 chr9 141213431 + 66501619 66501888 L1PA6 6164 - 5 274 118311 269 chain 30658 chr9 141213431 + 66515583 66515937 L1PA5 6144 - 5 359 83105 354 chain 25649 chr9 141213431 + 66533851 66534220 THE1C 375 - 0 375 101502 26 1 0 33 7 9 120 4 5 62 8 5 83 0 7 25 chain 19925 chr9 141213431 + 66535685 66535958 AluSc8 310 + 28 297 127381 88 0 1 17 19 11 7 0 3 142 chain 28579 chr9 141213431 + 66558096 66558472 THE1B 368 - 0 368 90825 120 8 1 72 4 3 172 chain 38713 chr9 141213431 + 66596804 66597643 L1PA8 5853 + 5328 5853 71132 236 2 1 43 2 0 70 2 1 8 2 0 24 3 5 24 2 1 19 309 0 93 chain 23388 chr9 141213431 + 66597661 66597929 AluY 311 + 0 286 113709 53 0 17 56 0 1 159 chain 28097 chr9 141213431 + 66605861 66606237 THE1C 375 + 0 374 92659 115 8 5 187 7 9 33 1 0 25 chain 84095 chr9 141213431 + 66679417 66680458 MER11C 1089 + 0 1059 41855 246 0 9 58 0 4 69 1 0 168 0 1 135 0 4 43 7 8 314 chain 228877 chr9 141213431 + 66685631 66688261 L1PA5 6144 - 7 2646 17363 616 0 2 37 0 1 108 0 1 192 0 1 438 0 1 104 0 3 1135 chain 22863 chr9 141213431 + 66689075 66689445 L1PA8 5853 - 0 364 116269 92 4 3 17 10 9 10 0 1 16 12 11 14 1 0 72 3 1 43 8 7 68 chain 72512 chr9 141213431 + 66689463 66690648 L1P3 4156 + 3123 4107 47261 247 0 1 4 1 0 25 0 4 112 0 16 34 3 6 47 225 0 106 0 1 381 chain 170583 chr9 141213431 + 66702349 66705261 HERVIP10F-int 4088 - 1124 3889 21984 205 0 11 283 1 2 5 1 0 22 4 7 9 3 0 96 2 1 71 20 19 82 2 1 65 1 0 17 6 5 401 10 7 9 4 3 23 10 9 32 3 0 30 1 0 19 7 5 63 1 0 29 1 0 24 1 0 6 1 0 13 1 0 15 19 12 4 1 0 13 4 0 34 1 4 99 1 0 41 1 0 14 1 0 22 8 5 16 0 15 4 1 0 5 1 0 21 1 0 11 2 0 41 1 0 30 1 0 7 4 1 4 1 0 21 1 0 4 14 6 5 1 0 8 1 0 20 1 0 11 1 0 26 1 0 5 1 0 60 1 0 7 1 0 32 8 5 48 1 0 6 2 0 28 1 0 7 1 0 19 1 0 15 17 15 11 1 0 5 3 2 6 1 0 32 1 0 31 1 0 18 22 17 12 3 0 11 3 1 4 1 0 16 3 2 14 1 0 7 1 0 6 23 12 31 2 0 15 6 0 3 1 0 9 83 46 7 1 0 20 1 0 12 3 1 7 3 0 15 4 0 12 14 8 13 1 0 4 8 4 11 chain 6694 chr9 141213431 + 66711032 66711102 LTR12C 1709 - 346 416 179734 70 chain 83062 chr9 141213431 + 66734518 66735529 LTR5B 1012 - 0 1012 42306 627 0 1 119 1 3 43 0 9 37 0 5 18 14 0 49 3 1 100 chain 222611 chr9 141213431 + 66759430 66761900 L1PA3long 6157 + 3672 6142 17726 2470 chain 529011 chr9 141213431 + 66826628 66832933 L1PA2 6032 + 13 6006 4298 238 8 7 842 0 1 955 315 0 2741 0 1 771 0 1 141 0 1 294 chain 16109 chr9 141213431 + 66839254 66839568 LTR7B 505 + 84 441 138025 21 0 10 56 15 81 15 43 5 6 0 2 82 1 0 26 12 16 37 chain 18053 chr9 141213431 + 66915072 66915289 L1PA7 6471 + 6248 6464 132718 60 1 0 156 chain 32007 chr9 141213431 + 66935731 66936098 L1PA5 6144 + 5777 6144 80852 367 chain 11234 chr9 141213431 + 66941001 66941165 L1MA5 2750 - 151 315 155286 13 0 4 7 6 2 4 0 1 4 1 0 129 chain 92435 chr9 141213431 + 66992580 66993622 L1PA3long 6157 - 808 1850 38834 1042 chain 75541 chr9 141213431 + 66993623 66994446 L1PA3long 6157 + 5333 6156 45750 823 chain 221146 chr9 141213431 + 67011632 67014076 L1PA3long 6157 - 0 2444 17802 2444 chain 135271 chr9 141213431 + 67061114 67062584 L1PA2 6032 - 1059 2529 26961 1470 chain 18150 chr9 141213431 + 67062584 67062779 L1PA2 6032 + 4984 5179 132226 195 chain 78151 chr9 141213431 + 67062779 67063627 L1PA2 6032 + 5180 6028 44437 848 chain 6333 chr9 141213431 + 67068346 67068452 LTR12C 1709 - 832 937 182523 40 1 0 30 14 14 21 chain 96502 chr9 141213431 + 67090836 67092437 L1PA7 6471 - 147 1406 37637 187 0 1 365 2 0 3 2 0 7 349 0 27 20 24 94 1 0 171 1 4 5 0 3 86 0 1 58 1 0 44 0 1 178 chain 28941 chr9 141213431 + 67091417 67091751 L1PA4 6152 - 0 339 89269 6 0 5 328 chain 107339 chr9 141213431 + 67092437 67093762 L1P3 4156 + 2638 3956 34881 106 37 27 678 0 5 358 0 1 20 3 0 123 chain 54062 chr9 141213431 + 67100865 67101463 L1PA3long 6157 - 8 606 56315 598 chain 31285 chr9 141213431 + 67213180 67213583 THE1B-int 1605 + 2 403 82015 13 0 2 10 5 0 138 0 1 237 chain 53857 chr9 141213431 + 67218910 67219508 L1PA3long 6157 + 5551 6149 56452 598 chain 107751 chr9 141213431 + 67226614 67227962 L1P3 4156 - 200 1518 34790 123 3 0 21 0 1 285 1 0 8 1 2 745 55 27 106 chain 95376 chr9 141213431 + 67227962 67229563 L1PA7 6471 + 5065 6324 37929 178 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 2 0 94 18 22 17 349 0 19 2 0 3 2 0 248 1 2 115 0 1 187 chain 29052 chr9 141213431 + 67228649 67228983 L1PA4 6152 + 5813 6152 88750 328 0 5 6 chain 94920 chr9 141213431 + 67256821 67257853 L1PA2 6032 - 6 1038 38117 1032 chain 135121 chr9 141213431 + 67257863 67259333 L1PA2 6032 + 3503 4973 26989 1470 chain 23502 chr9 141213431 + 67269578 67269862 AluSc 308 - 14 298 113122 284 chain 220473 chr9 141213431 + 67306309 67308750 L1PA3long 6157 + 3713 6157 17850 708 0 3 1733 chain 11234 chr9 141213431 + 67358121 67358285 L1MA5 2750 + 2435 2599 155285 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 31876 chr9 141213431 + 67363183 67363550 L1PA5 6144 - 0 367 81054 367 chain 3493 chr9 141213431 + 67524058 67524095 L1MB5 1630 + 1192 1229 215452 37 chain 32493 chr9 141213431 + 67533304 67534131 LTR12F 595 + 0 595 80039 103 0 1 31 4 0 7 15 83 10 24 0 51 0 64 161 337 0 84 chain 81205 chr9 141213431 + 67534152 67535164 HERV9-int 5642 + 0 1088 43085 593 14 11 112 3 0 80 2 1 51 4 2 78 0 85 75 chain 11716 chr9 141213431 + 67535182 67535322 LTR12F 595 + 445 585 153400 140 chain 34838 chr9 141213431 + 67535646 67536102 L1PA8 5853 + 5383 5853 76420 138 0 2 41 1 0 39 0 7 69 1 0 9 1 0 52 2 1 19 1 0 34 5 15 44 chain 20095 chr9 141213431 + 67540230 67540466 AluY 311 + 58 295 126843 68 0 1 168 chain 34272 chr9 141213431 + 67540507 67540883 L1PA2 6032 - 1 376 77245 15 1 0 360 chain 5831 chr9 141213431 + 67566277 67566367 L1MA8 2339 + 2174 2256 186851 22 6 0 40 2 0 20 chain 21610 chr9 141213431 + 67578022 67578278 AluY 311 + 27 284 121736 105 0 1 151 chain 29335 chr9 141213431 + 67587438 67587744 AluYb8 318 + 0 306 87370 306 chain 25427 chr9 141213431 + 67628802 67629110 AluY 311 + 0 303 102560 121 1 0 5 3 0 111 1 0 66 chain 102285 chr9 141213431 + 67629964 67631446 L1PB2 3958 - 1996 3476 36198 166 1 4 137 1 0 51 8 6 15 13 1 225 9 14 30 0 1 56 0 1 27 5 6 219 0 2 4 1 0 63 17 18 4 1 0 101 3 5 30 28 0 9 0 27 258 chain 117195 chr9 141213431 + 67631447 67633433 L1PB2 3958 + 2008 3647 32058 428 339 18 17 0 3 7 7 0 6 6 11 63 1 2 354 1 0 7 1 0 127 0 1 20 24 10 110 0 1 114 2 0 43 0 1 12 9 8 10 7 1 57 16 12 94 3 4 5 2 0 63 1 0 30 chain 112832 chr9 141213431 + 67637323 67638715 L1PA7 6471 + 5092 6452 33428 263 9 0 65 1 0 200 1 0 4 0 1 4 4 0 136 15 5 471 1 0 69 8 0 129 1 2 11 chain 533945 chr9 141213431 + 67646654 67652770 L1PA5 6144 - 2 6144 3712 7 4 0 12 1 0 127 8 15 1335 0 1 240 0 1 15 1 0 515 1 0 198 5 0 407 0 4 94 0 1 1231 1 0 411 1 0 150 0 19 62 0 1 149 1 6 1104 0 1 36 chain 5969 chr9 141213431 + 67670710 67670912 MER83C 372 - 7 198 185527 70 117 106 15 chain 29466 chr9 141213431 + 67760892 67761198 AluYb9 318 + 0 306 86775 306 chain 7510 chr9 141213431 + 67764527 67764631 HY1 111 + 6 111 174091 65 7 8 32 chain 11670 chr9 141213431 + 67776484 67776612 L1PA2 6032 - 435 563 153595 128 chain 28804 chr9 141213431 + 67776612 67776919 L1PA2 6032 + 5660 5967 89871 307 chain 3316 chr9 141213431 + 67776952 67776988 MER5B 177 + 91 127 218657 36 chain 34260 chr9 141213431 + 67804550 67804963 HERVH-int 3825 + 3411 3825 77263 300 7 8 106 chain 121190 chr9 141213431 + 67814940 67816291 L1PA3long 6157 - 0 1352 30636 146 1 0 187 0 2 1017 chain 8666 chr9 141213431 + 67819999 67820216 L1PA13 3608 - 3194 3390 167391 100 98 77 19 chain 12119 chr9 141213431 + 67841753 67841898 L1PA6 6164 - 2 147 151743 145 chain 25868 chr9 141213431 + 67842863 67843140 AluYb9 318 - 11 318 100578 123 0 30 154 chain 28809 chr9 141213431 + 67866176 67866479 AluYh9 303 - 0 303 89848 303 chain 70622 chr9 141213431 + 67868406 67869170 L1PA2 6032 - 3 767 48101 764 chain 39170 chr9 141213431 + 67869170 67869617 L1P1 4361 + 3549 3996 70509 447 chain 14786 chr9 141213431 + 67874346 67874539 L1PA8 5853 - 14 207 141984 79 1 0 19 2 1 5 0 3 50 1 0 36 chain 45204 chr9 141213431 + 67874539 67875124 L1PA7 6471 - 41 624 62820 121 28 17 54 1 5 18 0 5 363 chain 17215 chr9 141213431 + 67904244 67904471 AluY 311 + 46 296 135000 8 0 3 75 0 1 18 10 25 89 0 4 27 chain 66247 chr9 141213431 + 67950094 67950861 L1PA5 6144 - 9 777 49982 140 6 7 621 chain 6232 chr9 141213431 + 67963101 67963189 L1PA5 6144 + 6057 6142 183299 57 0 2 19 5 0 7 chain 46755 chr9 141213431 + 67986521 67987062 L1PA4 6152 + 5601 6140 61408 365 2 0 174 chain 3609 chr9 141213431 + 68176759 68176845 MER45A 178 + 75 162 213496 27 33 34 26 chain 43631 chr9 141213431 + 68183698 68184309 L1PA8 5853 + 5234 5853 64648 84 0 2 196 1 2 35 4 10 6 0 3 37 2 0 68 3 2 13 1 0 48 2 3 22 1 0 88 chain 163574 chr9 141213431 + 68185362 68187377 L1PA7 6471 - 2 2026 22865 8 5 0 258 0 1 233 8 12 254 1 0 82 3 1 76 0 1 282 6 13 362 2 3 17 0 3 418 chain 23759 chr9 141213431 + 68200263 68200536 AluYc 301 + 1 276 111712 119 0 2 154 chain 5141 chr9 141213431 + 68204824 68204895 MER67A 545 - 20 92 193661 43 3 4 25 chain 193097 chr9 141213431 + 68225938 68228062 L1PA3long 6157 + 4032 6155 19759 1872 1 0 251 chain 30811 chr9 141213431 + 68235918 68236393 LTR12F 595 - 0 595 82846 17 15 6 47 5 9 144 9 10 44 1 0 78 18 0 25 0 143 72 chain 58137 chr9 141213431 + 68268204 68268911 L1PA7 6471 + 5758 6465 53907 707 chain 28611 chr9 141213431 + 68271728 68272033 AluYk12 309 - 4 309 90693 305 chain 33730 chr9 141213431 + 68272054 68272548 MER4E1 777 - 29 460 78043 198 77 14 219 chain 73606 chr9 141213431 + 68277342 68278302 LTR5_Hs 974 - 0 974 46727 103 23 21 16 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 17051 chr9 141213431 + 68314635 68314861 AluY 311 + 62 286 135454 69 0 2 120 12 8 25 chain 6392 chr9 141213431 + 68321187 68321265 L1PA8 5853 - 4 82 182086 78 chain 5348 chr9 141213431 + 68326350 68326448 L1MA3 4352 + 4240 4332 191556 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 42955 chr9 141213431 + 68334771 68335265 LTR15 485 + 0 485 65469 343 8 0 138 1 0 4 chain 20344 chr9 141213431 + 68338409 68338642 L1PA3long 6157 + 5868 6101 126087 233 chain 38927 chr9 141213431 + 68350394 68350853 L1PA7 6471 - 12 472 70833 137 0 1 322 chain 30523 chr9 141213431 + 68355633 68355989 L1PA5 6144 + 5785 6140 83380 36 1 0 319 chain 22437 chr9 141213431 + 68369724 68369993 L1PA6 6164 + 5890 6159 118310 269 chain 463008 chr9 141213431 + 68383015 68388925 L1PA6 6164 + 0 6160 8290 42 15 17 328 47 48 156 1 2 179 0 1 14 0 17 458 0 1 331 11 11 83 0 1 353 2 1 96 0 1 30 0 206 375 0 1 385 0 7 45 0 2 302 1 0 557 8 9 120 0 1 16 0 8 496 0 1 76 0 1 461 1 0 48 9 1 29 0 7 80 0 1 598 18 18 139 chain 170850 chr9 141213431 + 68391274 68393258 L1PA4 6152 + 4159 6143 21958 505 11 12 1229 1 0 238 chain 5725 chr9 141213431 + 68400481 68400603 LTR6A 649 - 0 122 187884 20 6 5 25 1 0 13 24 26 33 chain 38781 chr9 141213431 + 68410050 68410505 LTR2 463 - 0 456 71034 81 0 1 374 chain 93921 chr9 141213431 + 68422751 68423814 L1P1 4361 - 860 1925 38373 248 0 3 73 1 0 741 chain 3065 chr9 141213431 + 68432324 68432356 tRNA-Arg-CGY_ 50 + 7 39 223674 32 chain 34728 chr9 141213431 + 68439965 68440362 L1HS 6032 - 4910 5307 76198 397 chain 433953 chr9 141213431 + 68440362 68445320 L1PA3long 6157 + 1267 6157 9215 528 2 1 320 0 1 141 0 2 9 2 0 174 70 0 80 1 0 769 0 1 380 1 2 1630 1 2 850 chain 13466 chr9 141213431 + 68459262 68459513 L1PA16 3655 + 3385 3619 146464 30 5 6 142 16 14 14 28 12 16 chain 19565 chr9 141213431 + 68461655 68461889 AluY 311 + 52 286 128476 234 chain 8920 chr9 141213431 + 68492122 68492317 MER30 238 + 3 238 166030 14 19 41 28 24 44 68 12 10 30 chain 267069 chr9 141213431 + 68509116 68512160 L1HS 6032 + 3 3047 15338 254 1 0 479 1 2 2309 chain 80566 chr9 141213431 + 68665772 68666677 L1P1 4361 - 1198 2103 43320 905 chain 97803 chr9 141213431 + 68666677 68668118 L1PA4 6152 + 5031 6146 37335 88 326 0 1027 chain 108048 chr9 141213431 + 68670680 68671882 L1PA3long 6157 + 4955 6157 34702 1202 chain 4470 chr9 141213431 + 68719278 68719356 LTR37A 408 + 289 365 201118 28 6 5 13 1 0 30 chain 440669 chr9 141213431 + 68736522 68741412 L1PA3long 6157 - 0 4890 9038 102 1 3 3733 3 0 348 0 1 703 chain 33238 chr9 141213431 + 68741412 68741811 L1HS 6032 + 725 1122 78427 123 2 0 21 3 0 165 0 3 85 chain 73669 chr9 141213431 + 68756479 68757283 L1PA2 6032 - 0 803 46698 793 1 0 10 chain 66075 chr9 141213431 + 68757283 68758005 L1PA2 6032 + 4520 5246 49778 233 0 4 489 chain 27533 chr9 141213431 + 68762888 68763261 MER1A 529 - 1 375 94560 57 7 9 13 1 2 6 1 0 139 1 0 148 chain 6601 chr9 141213431 + 68773554 68773741 MIR 256 - 10 201 180439 34 9 0 7 47 55 47 19 24 24 chain 72478 chr9 141213431 + 68782148 68782932 L1HS 6032 - 0 782 47277 6 2 0 776 chain 535257 chr9 141213431 + 68989016 68995149 L1PA3long 6157 + 6 6148 3560 121 4 14 13 26 12 880 1 0 2131 1 0 270 5 8 277 0 1 345 4 6 270 0 4 100 0 3 30 0 2 1655 chain 56320 chr9 141213431 + 68995156 68995815 L1PA4 6152 + 5474 6143 54955 5 0 3 64 1 8 589 chain 80911 chr9 141213431 + 69004793 69005698 L1P1 4361 - 1198 2103 43194 905 chain 97710 chr9 141213431 + 69005698 69007149 L1PA4 6152 + 5031 6146 37365 88 336 0 1027 chain 107609 chr9 141213431 + 69009710 69010912 L1PA3long 6157 + 4955 6157 34825 1202 chain 4253 chr9 141213431 + 69021152 69021292 Ricksha_c 1012 + 91 216 203848 39 55 45 23 11 6 12 chain 4470 chr9 141213431 + 69058304 69058382 LTR37A 408 + 289 365 201117 28 6 5 13 1 0 30 chain 440476 chr9 141213431 + 69075530 69080418 L1PA3long 6157 - 0 4890 9042 843 0 4 2991 3 0 348 0 1 703 chain 33320 chr9 141213431 + 69080418 69080817 L1HS 6032 + 725 1122 78283 123 2 0 16 3 0 170 0 3 85 chain 73554 chr9 141213431 + 69095469 69096266 L1PA2 6032 - 2 798 46759 791 1 0 5 chain 66422 chr9 141213431 + 69096266 69096993 L1PA2 6032 + 4515 5246 49826 238 0 4 489 chain 27402 chr9 141213431 + 69101815 69102188 MER1A 529 - 1 375 94960 57 7 9 13 1 2 6 1 0 139 1 0 148 chain 6601 chr9 141213431 + 69112475 69112662 MIR 256 - 10 201 180438 34 9 0 7 47 55 47 19 24 24 chain 7746 chr9 141213431 + 69175506 69175606 MIR 256 + 85 186 172619 44 0 1 56 chain 5081 chr9 141213431 + 69177768 69177823 LTR5A 1029 + 0 55 194280 55 chain 87449 chr9 141213431 + 69178389 69179421 LTR5A 1029 + 0 1029 40579 141 7 6 542 0 2 294 5 1 43 chain 45273 chr9 141213431 + 69180820 69181422 HERVE-int 4064 + 2119 2717 62745 54 4 1 35 9 6 173 0 1 4 1 0 110 0 2 212 chain 340701 chr9 141213431 + 69208105 69212609 L1PB1 5432 - 13 5373 11883 23 0 7 19 1 0 24 2 0 14 1 0 5 6 5 25 14 1 12 8 7 41 1 0 15 3 1 53 2 0 9 4 0 12 1 0 8 1 0 23 7 0 9 0 3 297 2 1 173 4 7 64 8 7 129 0 6 355 1 0 66 7 837 37 0 1 84 1 4 30 0 2 161 2 1 65 0 4 108 0 1 78 0 3 86 7 0 36 0 9 13 0 11 49 0 4 82 0 2 30 7 8 6 1 0 53 0 6 102 1 0 52 0 1 254 1 3 377 12 0 105 0 1 35 0 8 16 0 1 193 0 9 100 0 2 383 11 4 33 0 7 100 1 0 263 1 0 79 chain 9269 chr9 141213431 + 69213432 69213580 Tigger3c 601 - 81 228 164224 92 4 0 16 16 15 13 0 4 7 chain 542484 chr9 141213431 + 69223193 69229219 L1PA3long 6157 + 4 6156 2434 148 10 11 613 0 128 122 1 0 83 27 0 3788 0 1 758 1 0 10 0 23 451 0 3 9 1 0 4 chain 20552 chr9 141213431 + 69257425 69257678 AluY 311 + 40 294 125465 86 0 1 167 chain 21179 chr9 141213431 + 69271973 69272296 THE1B 368 - 0 368 123282 18 5 26 81 35 45 30 1 0 112 1 16 40 chain 23099 chr9 141213431 + 69273872 69274203 THE1B 368 - 12 368 115149 116 31 39 8 0 2 19 1 0 97 0 1 15 0 15 44 chain 221297 chr9 141213431 + 69336376 69338820 L1PA3long 6157 - 5 2448 17795 1262 1 0 1181 chain 19042 chr9 141213431 + 69341598 69341923 THE1B 368 - 23 368 129999 172 26 25 16 21 27 38 8 23 44 chain 17084 chr9 141213431 + 69359475 69359702 AluY 311 + 46 296 135364 8 0 3 75 0 1 18 10 25 89 0 4 27 chain 66866 chr9 141213431 + 69405318 69406085 L1PA5 6144 - 9 777 49700 140 6 7 621 chain 6323 chr9 141213431 + 69418356 69418445 L1PA5 6144 + 6057 6143 182609 57 0 2 19 5 0 8 chain 45896 chr9 141213431 + 69441720 69442263 L1PA4 6152 + 5601 6140 62136 365 2 0 17 3 1 156 chain 3239 chr9 141213431 + 69448396 69448434 L1MC4 1079 - 543 581 220239 38 chain 7055 chr9 141213431 + 69453574 69453793 MSTA-int 1630 + 1382 1605 177069 10 0 7 6 7 0 18 67 65 28 6 5 30 9 16 38 chain 5899 chr9 141213431 + 69453872 69454013 MSTA 426 + 57 189 186194 17 1 0 5 53 45 65 chain 5866 chr9 141213431 + 69470811 69471012 MSTA 426 + 158 366 186521 28 1 0 7 0 2 19 108 114 38 chain 7327 chr9 141213431 + 69488510 69488607 MSTB 430 + 0 98 175248 83 1 2 13 chain 75432 chr9 141213431 + 69491188 69492162 LTR5_Hs 974 + 0 974 45800 293 8 1 165 0 4 43 0 1 61 1 0 88 0 1 17 3 5 97 7 7 191 chain 24425 chr9 141213431 + 69520290 69520565 AluY 311 + 25 299 107935 152 1 0 122 chain 71231 chr9 141213431 + 69537951 69539081 L1PB1 5432 + 4339 5420 47839 82 0 1 221 5 6 40 1 0 95 32 32 287 32 14 17 1 0 13 2 1 8 2 0 3 2 0 8 2 0 53 2 1 16 2 1 43 1 0 15 3 0 6 16 6 19 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 chain 7067 chr9 141213431 + 69549289 69549369 MER45C 884 + 88 168 176965 80 chain 26829 chr9 141213431 + 69564788 69565107 AluYk4 311 + 0 302 96878 126 17 0 176 chain 31202 chr9 141213431 + 69572163 69572566 THE1B-int 1605 + 2 403 82157 13 0 2 10 5 0 138 0 1 237 chain 54407 chr9 141213431 + 69580907 69581505 L1PA3long 6157 + 5551 6149 56092 598 chain 107912 chr9 141213431 + 69588610 69589948 L1P3 4156 - 200 1518 34746 123 3 0 21 0 1 285 1 0 8 1 2 745 45 27 106 chain 96288 chr9 141213431 + 69589948 69591549 L1PA7 6471 + 5065 6324 37683 178 0 1 44 1 0 58 0 1 86 0 3 5 1 4 171 1 0 94 20 24 15 349 0 19 2 0 3 2 0 365 0 1 187 chain 28810 chr9 141213431 + 69590634 69590968 L1PA4 6152 + 5813 6152 89838 328 0 5 6 chain 2952 chr9 141213431 + 69604024 69604061 MLT1B 390 - 52 89 226044 37 chain 3680 chr9 141213431 + 69614048 69614088 LTR12C 1709 + 997 1037 212233 40 chain 95912 chr9 141213431 + 69618807 69619851 L1PA2 6032 - 3 1048 37821 849 0 1 195 chain 127825 chr9 141213431 + 69619851 69621251 L1PA2 6032 + 3503 4973 28613 543 0 70 857 chain 220792 chr9 141213431 + 69668268 69670712 L1PA3long 6157 + 3713 6157 17829 2444 chain 75541 chr9 141213431 + 69687895 69688718 L1PA3long 6157 - 1 824 45751 823 chain 92361 chr9 141213431 + 69688719 69689764 L1PA3long 6157 + 4307 5352 38855 1045 chain 11234 chr9 141213431 + 69739580 69739744 L1MA5 2750 + 2435 2599 155284 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 29396 chr9 141213431 + 69744647 69745014 L1PA5 6144 - 0 367 87096 139 17 17 211 chain 26679 chr9 141213431 + 69759167 69759478 AluYf4 310 + 0 310 97392 212 1 0 98 chain 17994 chr9 141213431 + 69765456 69765670 L1PA7 6471 - 10 223 132875 153 1 0 60 chain 24295 chr9 141213431 + 69771986 69772333 MLT2A1 477 + 0 385 108678 142 0 1 26 1 5 106 0 25 40 19 27 13 chain 3237 chr9 141213431 + 69776024 69776062 MLT2A1 477 - 0 38 220305 38 chain 28661 chr9 141213431 + 69781083 69781422 L1PA5 6144 - 17 348 90483 123 7 0 116 1 0 92 chain 528977 chr9 141213431 + 69811693 69817794 L1PA3long 6157 - 0 6151 4304 12 0 3 127 0 1 1116 0 1 543 0 4 56 0 2 778 0 1 314 0 35 20 0 1 467 1 0 432 0 1 775 0 1 978 0 1 482 chain 13503 chr9 141213431 + 69821949 69822109 L1PA4 6152 + 5994 6152 146353 152 2 0 6 chain 83315 chr9 141213431 + 69862276 69863318 MER11C 1089 + 0 1059 42195 246 0 9 58 0 4 69 1 0 168 0 1 135 0 4 43 7 8 188 1 0 126 chain 229130 chr9 141213431 + 69868633 69871263 L1PA5 6144 - 7 2646 17352 616 0 2 37 0 1 108 0 1 192 0 1 438 0 1 104 0 3 1135 chain 22516 chr9 141213431 + 69872077 69872447 L1PA8 5853 - 0 364 117964 92 4 3 17 10 9 10 0 1 16 12 11 14 1 0 72 3 1 43 8 7 68 chain 72627 chr9 141213431 + 69872465 69873647 L1P3 4156 + 3123 4107 47203 247 0 1 4 1 0 25 0 4 112 0 16 34 3 6 48 222 0 105 0 1 381 chain 172493 chr9 141213431 + 69885346 69888255 HERVIP10F-int 4088 - 1124 3889 21763 205 0 11 283 1 2 5 1 0 134 2 1 71 20 19 82 2 1 65 1 0 17 6 5 401 10 7 9 4 3 23 10 9 32 3 0 30 1 0 19 7 5 63 1 0 29 1 0 24 1 0 6 1 0 13 1 0 15 19 12 4 1 0 13 4 0 34 1 4 99 1 0 41 1 0 14 1 0 22 8 5 16 0 15 4 1 0 5 1 0 21 1 0 12 2 0 40 1 0 30 0 2 5 4 1 4 1 0 21 1 0 4 14 6 5 1 0 8 1 0 20 1 0 11 1 0 26 1 0 5 1 0 60 1 0 8 1 0 31 8 5 48 1 0 6 2 0 28 1 0 7 1 0 21 1 0 13 17 15 11 1 0 5 3 2 6 1 0 32 1 0 31 1 0 18 20 15 14 3 0 11 3 1 4 1 0 16 3 2 14 1 0 7 1 0 6 23 12 31 2 0 15 6 0 3 1 0 9 57 32 12 13 1 8 1 0 20 1 0 12 3 1 7 3 0 15 4 0 12 14 8 13 1 0 4 8 4 11 chain 83073 chr9 141213431 + 69914703 69915714 LTR5B 1012 - 0 1012 42301 627 0 1 119 1 3 43 0 9 37 0 5 18 14 0 49 3 1 100 chain 222175 chr9 141213431 + 69939632 69942102 L1PA3long 6157 + 3672 6142 17749 2470 chain 74703 chr9 141213431 + 70074276 70075099 L1PA3long 6157 - 1 824 46158 823 chain 90665 chr9 141213431 + 70075100 70076143 L1PA3long 6157 + 4307 5349 39401 156 3 2 884 chain 32007 chr9 141213431 + 70111325 70111692 L1PA5 6144 - 0 367 80855 367 chain 18053 chr9 141213431 + 70132129 70132346 L1PA7 6471 - 7 223 132721 156 1 0 60 chain 24173 chr9 141213431 + 70138663 70139010 MLT2A1 477 + 0 385 109361 142 0 1 26 1 5 106 0 25 40 19 27 13 chain 29106 chr9 141213431 + 70147736 70148070 L1PA5 6144 - 17 348 88520 131 2 0 108 1 0 92 chain 22093 chr9 141213431 + 70166769 70167107 THE1B 368 + 6 368 119826 38 0 15 110 1 0 29 42 52 118 chain 337183 chr9 141213431 + 70184637 70189125 L1PB1 5432 - 13 5373 11968 23 0 7 19 1 0 24 2 0 14 1 0 5 6 5 25 14 1 12 8 7 41 1 0 15 3 1 53 2 0 9 5 1 11 1 0 8 1 0 23 7 0 9 0 3 297 2 1 173 4 7 64 8 7 121 0 16 353 1 0 66 7 837 37 0 1 84 1 4 74 0 5 114 2 1 65 0 4 108 0 1 78 0 3 86 7 0 36 0 9 13 0 11 49 0 4 82 0 2 30 8 9 5 1 0 53 0 6 102 1 0 52 0 1 254 1 3 39 2 1 331 12 0 111 0 1 35 0 8 16 0 1 193 0 9 100 0 2 383 7 4 33 0 7 100 1 0 263 1 0 79 chain 10110 chr9 141213431 + 70189947 70190099 Tigger3c 601 - 81 228 160044 92 4 0 16 16 15 24 chain 542682 chr9 141213431 + 70199715 70205780 L1PA3long 6157 + 4 6156 2394 148 10 11 42 3 4 506 22 8 53 0 128 118 1 0 84 27 0 4550 1 0 500 chain 74572 chr9 141213431 + 70325017 70325840 L1PA3long 6157 - 1 824 46225 823 chain 90602 chr9 141213431 + 70325841 70326887 L1PA3long 6157 + 4307 5352 39429 156 3 2 887 chain 11234 chr9 141213431 + 70356681 70356845 L1MA5 2750 + 2435 2599 155283 129 1 0 4 0 1 4 6 2 7 0 4 13 chain 32007 chr9 141213431 + 70361748 70362115 L1PA5 6144 - 0 367 80854 367 chain 26245 chr9 141213431 + 70376307 70376620 AluYf4 310 + 0 310 99035 212 1 0 69 2 0 29 chain 18053 chr9 141213431 + 70382600 70382817 L1PA7 6471 - 7 223 132720 156 1 0 60 chain 24173 chr9 141213431 + 70389139 70389486 MLT2A1 477 + 0 385 109360 142 0 1 26 1 5 106 0 25 40 19 27 13 chain 28828 chr9 141213431 + 70398214 70398549 L1PA5 6144 - 17 348 89769 134 3 0 105 1 0 92 chain 20307 chr9 141213431 + 70417695 70418027 THE1B 368 + 12 368 126216 32 0 15 110 1 0 29 42 52 91 1 4 5 3 0 18 chain 334868 chr9 141213431 + 70435551 70440037 L1PB1 5432 - 13 5373 12029 23 0 7 19 1 0 24 2 0 14 1 0 5 6 5 25 14 1 12 8 7 41 1 0 15 3 1 53 2 0 9 5 1 11 1 0 8 1 0 23 7 0 9 0 3 297 2 1 173 4 7 64 8 7 121 0 16 353 1 0 67 2 832 41 0 1 84 1 4 74 0 5 114 2 1 65 0 4 108 0 1 49 0 3 22 0 3 90 7 0 36 0 9 13 0 11 49 0 4 82 0 2 30 7 8 6 1 0 53 0 6 102 1 0 52 0 1 254 1 3 39 2 1 331 13 0 111 0 1 26 9 17 16 0 1 193 0 9 100 0 2 383 7 4 33 0 7 100 2 1 262 1 0 79 chain 9988 chr9 141213431 + 70440859 70441011 Tigger3c 601 - 81 228 160645 92 4 0 16 16 15 24 chain 543808 chr9 141213431 + 70450626 70456689 L1PA3long 6157 + 4 6156 2237 149 9 10 42 3 4 506 22 8 53 0 128 118 1 0 81 27 0 3255 0 2 1296 1 0 500 chain 20595 chr9 141213431 + 70484997 70485251 AluY 311 + 40 295 125312 86 0 1 168 chain 23893 chr9 141213431 + 70486201 70486500 AluSc 308 + 10 308 110938 26 1 0 272 chain 21170 chr9 141213431 + 70499550 70499873 THE1B 368 - 0 368 123310 18 5 26 81 35 45 30 1 0 112 1 16 40 chain 22560 chr9 141213431 + 70501449 70501780 THE1B 368 - 12 368 117763 116 31 39 8 0 2 16 4 3 97 0 1 15 0 15 44 chain 24882 chr9 141213431 + 70559980 70560267 AluSp 311 + 8 295 105448 287 chain 194126 chr9 141213431 + 70573362 70575487 L1PA3long 6157 + 4032 6157 19663 2125 chain 31801 chr9 141213431 + 70583417 70583874 LTR12F 595 - 0 595 81165 24 9 0 46 4 8 145 9 10 44 1 0 103 0 143 16 0 1 4 1 0 51 chain 30082 chr9 141213431 + 70598879 70599197 AluYb9 318 + 0 318 84555 318 chain 58160 chr9 141213431 + 70616335 70617050 L1PA7 6471 + 5755 6467 53894 5 3 0 707 chain 33697 chr9 141213431 + 70619877 70620374 MER4E1 777 - 26 460 78096 201 77 14 219 chain 3480 chr9 141213431 + 70656113 70656151 MSTA 426 - 370 408 215651 38 chain 18148 chr9 141213431 + 70661514 70661740 AluY 311 + 62 286 132462 69 0 2 117 4 0 36 chain 6401 chr9 141213431 + 70667803 70667881 L1PA8 5853 - 4 82 182015 78 chain 5470 chr9 141213431 + 70672981 70673079 L1MA3 4352 + 4240 4332 190294 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 43106 chr9 141213431 + 70681412 70681906 LTR15 485 + 0 485 65281 343 8 0 138 1 0 4 chain 20436 chr9 141213431 + 70685050 70685283 L1PA3long 6157 + 5868 6101 125793 233 chain 203308 chr9 141213431 + 70687266 70689548 L1PA4 6152 - 0 2289 18975 208 0 3 633 0 4 1441 chain 34910 chr9 141213431 + 70703120 70703594 L1PA7 6471 - 6 474 76329 6 5 0 137 0 9 8 26 18 102 0 1 104 4 1 82 chain 76418 chr9 141213431 + 70715252 70716298 MER11C 1089 - 26 1089 45249 25 0 1 69 1 0 48 1 0 54 0 1 127 0 1 29 15 18 112 16 15 177 1 0 35 19 21 9 0 4 61 0 9 247 chain 22724 chr9 141213431 + 70845243 70845574 THE1B 368 + 0 356 116962 44 0 15 15 0 1 100 1 0 16 0 2 8 31 39 116 chain 20556 chr9 141213431 + 70847150 70847450 THE1B 368 + 0 324 125453 40 1 16 112 1 0 30 35 45 81 chain 4705 chr9 141213431 + 70865797 70865858 Tigger1 2417 - 54 115 198467 61 chain 543353 chr9 141213431 + 70890246 70896273 L1PA3long 6157 - 1 6153 2289 4 1 0 9 0 3 451 0 23 10 1 0 4548 27 0 82 1 0 117 0 128 618 10 11 148 chain 8876 chr9 141213431 + 70905878 70906031 Tigger3c 601 + 373 520 166257 24 16 15 14 4 0 37 7 6 51 chain 341043 chr9 141213431 + 70906854 70911360 L1PB1 5432 + 59 5419 11869 81 1 0 266 1 0 94 0 7 34 13 6 381 0 2 100 0 9 193 0 1 16 0 8 35 0 1 110 12 0 372 1 3 253 0 1 56 1 0 99 0 6 53 1 0 6 7 8 32 0 2 80 0 4 43 0 11 19 0 9 33 7 0 89 0 3 78 0 1 108 0 4 65 2 1 193 1 4 84 0 1 37 7 837 67 1 0 354 0 6 129 8 7 64 4 7 180 1 0 291 15 11 24 1 0 8 1 0 12 4 0 9 2 0 53 3 1 15 1 0 41 8 7 12 14 1 25 6 5 5 1 0 14 2 0 24 1 0 19 0 7 23 chain 44806 chr9 141213431 + 70938141 70938743 HERVE-int 4064 - 1347 1945 63284 212 0 2 110 1 0 4 0 1 173 9 6 35 4 1 54 chain 87660 chr9 141213431 + 70940145 70941177 LTR5A 1029 - 0 1029 40507 46 4 0 292 0 2 542 7 6 141 chain 5081 chr9 141213431 + 70941743 70941798 LTR5A 1029 - 974 1029 194281 55 chain 7746 chr9 141213431 + 70943958 70944058 MIR 256 - 70 171 172620 56 0 1 44 chain 4965 chr9 141213431 + 70946784 70946845 MER20 218 + 5 67 195530 37 0 1 24 chain 3990 chr9 141213431 + 70986904 70986954 MLT1C 463 + 351 401 207530 50 chain 4777 chr9 141213431 + 71007570 71007656 MIR 256 + 59 150 197604 20 19 24 47 chain 27051 chr9 141213431 + 71018058 71018431 MER1A 529 + 154 528 96110 148 1 0 142 25 27 57 chain 65674 chr9 141213431 + 71023274 71024001 L1PA3long 6157 - 783 1509 49945 491 2 1 234 chain 72996 chr9 141213431 + 71024001 71024790 L1PA3long 6157 + 5357 6146 47029 789 chain 43089 chr9 141213431 + 71037664 71038336 L1PB1 5432 - 12 649 65302 16 1 0 13 1 0 21 1 0 24 2 0 6 60 45 15 1 0 44 1 0 15 2 1 50 3 1 11 6 2 9 1 0 9 1 0 24 3 0 9 1 2 288 3 1 31 chain 3932 chr9 141213431 + 71076237 71076284 MLT1J1 437 - 315 362 208385 47 chain 49077 chr9 141213431 + 71112960 71113578 PRIMA4_LTR 623 + 0 623 59690 25 1 0 163 6 1 50 0 6 15 2 3 43 1 0 7 0 2 69 2 0 214 0 5 20 chain 5881 chr9 141213431 + 71134504 71134569 L1PA3long 6157 + 6084 6149 186367 65 chain 2908 chr9 141213431 + 71183058 71183143 LTR52 417 + 20 109 226899 14 33 36 4 1 0 28 0 2 5 chain 539425 chr9 141213431 + 71202096 71209529 L1PA7 6471 - 3 6471 2910 10 0 2 56 2 0 5 0 2 120 12 1 654 2 0 117 5 0 826 0 4 185 0 1 64 11 14 851 3 7 368 1 0 4 0 1 76 0 4 70 6 9 50 10 0 323 4 5 972 0 11 21 1 3 71 1 0 226 968 0 46 0 1 138 0 1 351 0 1 385 5 0 36 1 0 376 chain 69774 chr9 141213431 + 71207240 71208006 L1PA2 6032 - 0 767 48483 156 1 2 167 1 0 10 0 1 431 chain 16546 chr9 141213431 + 71208006 71208191 L1PA2 6032 + 5072 5258 135102 54 0 1 131 chain 110945 chr9 141213431 + 71231757 71233083 LTR12C 1709 + 0 1709 33951 650 0 278 184 1 0 4 4 2 99 0 1 6 0 4 176 15 122 7 1 0 7 1 0 87 1 0 8 1 0 74 chain 23294 chr9 141213431 + 71239645 71239937 AluY 311 + 8 308 114232 124 1 2 29 0 6 67 4 5 67 chain 47303 chr9 141213431 + 71257259 71257932 LTR8 732 - 0 721 60964 91 2 0 5 2 4 95 14 11 18 0 5 11 0 1 143 9 36 149 0 6 14 4 6 96 0 9 12 0 1 8 chain 64564 chr9 141213431 + 71274966 71275941 L1MA5A 2387 + 1339 2295 50771 72 1 0 4 0 1 7 0 12 93 32 39 72 1 0 326 0 2 66 1 0 36 1 0 40 1 0 48 2 0 24 4 0 34 56 26 54 chain 8048 chr9 141213431 + 71286981 71287148 L1MA4A 3247 - 75 229 170772 24 37 41 69 17 0 20 chain 28924 chr9 141213431 + 71314727 71315090 L1PA5 6144 + 5790 6144 89350 45 0 1 5 20 10 293 chain 6949 chr9 141213431 + 71331404 71331495 L1PA17 2846 + 2604 2693 177821 28 1 0 18 1 0 43 chain 4633 chr9 141213431 + 71339702 71339757 L1MA4 2864 - 2052 2107 199263 55 chain 15568 chr9 141213431 + 71466926 71467144 L1PA8 5853 + 5639 5853 139670 43 11 9 49 2 1 19 2 1 92 chain 7509 chr9 141213431 + 71548111 71548198 L1PA8 5853 + 5761 5848 174113 87 chain 8590 chr9 141213431 + 71550788 71550884 U6 107 - 0 96 167784 96 chain 142610 chr9 141213431 + 71551821 71553571 L1P2 5180 - 1318 3089 25711 4 0 1 435 5 12 221 1 0 232 5 7 6 0 1 153 0 4 459 2 0 7 0 3 57 0 2 49 0 2 20 0 2 94 chain 3247 chr9 141213431 + 71572443 71572564 MER39 703 - 131 263 220059 26 69 80 26 chain 29161 chr9 141213431 + 71575844 71576149 AluYb8 318 + 0 305 88252 305 chain 115554 chr9 141213431 + 71585926 71587287 L1PA7 6471 - 8 1384 32591 127 7 14 598 0 2 22 0 2 80 0 4 527 chain 5084 chr9 141213431 + 71605121 71605181 MER5A 189 + 12 72 194240 60 chain 22085 chr9 141213431 + 71606904 71607177 AluSp 311 - 35 311 119863 173 0 2 39 13 14 48 chain 43683 chr9 141213431 + 71636417 71637025 LTR8 732 - 0 611 64589 153 0 1 34 16 17 35 19 21 20 11 10 320 chain 25122 chr9 141213431 + 71637044 71638259 MER4D1 891 + 329 875 104167 39 488 154 88 0 2 50 8 5 43 8 0 23 1 0 26 324 0 40 17 16 60 chain 19508 chr9 141213431 + 71649853 71650093 AluY 311 + 48 280 128633 60 0 1 9 10 0 14 0 1 147 chain 3510 chr9 141213431 + 71650251 71650309 MIR 256 - 142 198 215213 28 3 2 21 1 0 5 chain 6261 chr9 141213431 + 71658946 71659037 MER82 654 - 435 537 183079 49 1 12 41 chain 24911 chr9 141213431 + 71673707 71674003 AluY 311 + 5 302 105271 126 1 2 169 chain 35781 chr9 141213431 + 71676437 71676849 L1PA3long 6157 - 0 405 75161 154 7 0 251 chain 6155 chr9 141213431 + 71694440 71694514 L1PA16 3655 + 2135 2208 183939 28 1 0 45 chain 29397 chr9 141213431 + 71703156 71703467 AluYb8 318 - 7 318 87092 311 chain 42950 chr9 141213431 + 71707057 71707610 MER41A 554 - 0 554 65479 168 0 1 65 0 1 114 10 0 8 12 10 9 0 11 167 chain 47239 chr9 141213431 + 71718529 71719037 SVA_D 2077 - 3 511 61011 508 chain 11509 chr9 141213431 + 71749941 71750087 MLT1A 405 - 254 399 154258 4 1 0 141 chain 8769 chr9 141213431 + 71771327 71771439 MER4B 649 - 72 184 166818 112 chain 28262 chr9 141213431 + 71771439 71771734 AluYd8 298 - 3 298 92072 295 chain 22880 chr9 141213431 + 71775555 71775900 THE1B 368 - 0 368 116186 75 1 0 50 35 45 25 2 1 102 11 26 44 chain 28320 chr9 141213431 + 71777932 71778242 AluYa5 310 - 2 310 91869 182 2 0 126 chain 3561 chr9 141213431 + 71782876 71782916 MADE1 96 + 56 96 214308 40 chain 3414 chr9 141213431 + 71809495 71809536 MER3 215 + 174 215 216864 41 chain 13441 chr9 141213431 + 71860942 71861154 MER2 342 + 109 318 146546 139 24 25 22 2 0 9 2 0 14 chain 7558 chr9 141213431 + 71884272 71884366 MSTB 430 - 336 430 173816 94 chain 35351 chr9 141213431 + 71892126 71892540 L1PA7 6471 - 17 430 75730 134 1 0 279 chain 221666 chr9 141213431 + 71898618 71901441 L1PA8A 6298 - 100 2972 17775 13 1 8 22 13 25 293 2 0 6 0 2 156 0 24 25 0 1 132 5 3 345 1 0 290 2 1 54 4 8 655 23 23 240 1 2 50 0 1 344 0 1 5 2 1 46 0 4 52 1 0 40 chain 212051 chr9 141213431 + 71904468 71906848 L1PA5 6144 + 3762 6142 18358 729 1 2 801 1 0 848 chain 46414 chr9 141213431 + 71921854 71922483 MER41B 635 - 0 635 61670 31 2 0 5 1 3 29 13 18 37 0 1 41 15 14 327 0 1 128 chain 6533 chr9 141213431 + 71930412 71930630 L1MB8 1703 - 41 205 180979 23 21 12 23 66 23 17 11 10 46 2 1 9 chain 4513 chr9 141213431 + 71958229 71958284 MER110 477 - 25 80 200643 55 chain 3543 chr9 141213431 + 71958901 71958941 MADE1 96 - 51 91 214669 40 chain 61681 chr9 141213431 + 71983752 71984517 L1PA7 6471 - 3 768 52046 9 2 0 92 6 7 8 0 1 27 16 18 301 4 2 300 chain 319839 chr9 141213431 + 72021150 72024821 HERVH-int 3825 - 0 3825 12605 41 0 1 837 8 11 480 1 0 1607 0 3 66 0 1 13 0 2 6 0 1 55 42 0 29 7 194 145 1 0 333 chain 22136 chr9 141213431 + 72024828 72025180 LTR7 482 - 5 449 119640 93 0 2 15 1 2 38 10 20 43 8 40 60 6 6 37 6 53 35 chain 534865 chr9 141213431 + 72028647 72034706 L1PA4 6152 - 0 6140 3609 6 5 0 7 3 0 100 0 1 146 1 0 520 1 0 167 28 0 614 1 0 237 1 5 395 1 0 2008 1 0 127 0 1 155 0 1 363 1 2 238 2 0 54 1 2 57 1 0 639 1 117 178 chain 542884 chr9 141213431 + 72049712 72055847 L1PA4 6152 - 0 6152 2357 249 0 1 594 0 4 257 0 12 57 0 1 93 1 0 101 0 1 434 0 4 395 1 0 2007 1 0 123 0 1 155 0 1 208 11 3 116 18 21 1314 chain 7533 chr9 141213431 + 72062315 72062428 MER20 218 - 4 119 173955 41 11 13 61 chain 23368 chr9 141213431 + 72073714 72074019 AluSp 311 - 4 311 113823 179 1 0 3 1 0 45 7 11 69 chain 4194 chr9 141213431 + 72074600 72074682 MIR 256 + 52 133 204626 27 25 24 30 chain 6729 chr9 141213431 + 72088525 72088608 L1PA4 6152 + 6064 6152 179473 77 0 5 6 chain 554949 chr9 141213431 + 72092029 72098045 L1PA2 6032 + 6 6029 831 572 0 1 739 1 0 2916 0 4 853 1 0 541 1 0 145 0 5 247 chain 151731 chr9 141213431 + 72103682 72105400 L1PA3long 6157 + 4277 6157 24371 76 0 4 315 0 2 250 0 2 124 0 154 15 1 0 629 0 1 308 chain 98048 chr9 141213431 + 72105409 72106532 L1PA5 6144 + 5022 6144 37264 976 1 2 132 3 1 11 chain 556655 chr9 141213431 + 72120967 72126986 L1PA2 6032 + 0 6016 654 65 3 0 513 0 1 739 1 0 4698 chain 2825 chr9 141213431 + 72138322 72138358 L1PA16 3655 + 5 40 228307 21 1 0 14 chain 2503 chr9 141213431 + 72146936 72146994 L1MC1 2226 + 2131 2188 233107 5 0 1 10 12 11 26 1 0 4 chain 10869 chr9 141213431 + 72175615 72175769 Tigger4a 237 - 58 200 156703 15 0 1 84 13 0 42 chain 17912 chr9 141213431 + 72182346 72182559 L1PA5 6144 - 5 219 133075 146 3 4 64 chain 144345 chr9 141213431 + 72190168 72191774 L1PA4 6152 + 4535 6143 25420 1059 0 1 53 1 2 493 chain 3016 chr9 141213431 + 72199423 72199456 MIR 256 + 79 112 224681 33 chain 58757 chr9 141213431 + 72212068 72212717 L1PA2 6032 - 638 1291 53550 208 0 4 441 chain 35301 chr9 141213431 + 72212725 72213106 L1PA2 6032 + 5394 5775 75796 381 chain 22775 chr9 141213431 + 72213106 72213364 L1PA2 6032 + 5776 6032 116703 249 2 0 7 chain 6896 chr9 141213431 + 72213873 72213968 L1MB3 1562 + 1326 1420 178214 26 1 0 48 0 1 13 1 0 6 chain 77021 chr9 141213431 + 72246083 72246969 L1PA6 6164 + 5266 6160 44957 743 0 8 143 chain 35051 chr9 141213431 + 72250229 72250743 L1MA3 4352 + 42 574 76114 59 0 3 36 1 0 16 1 0 14 0 11 22 0 1 62 19 22 18 1 0 178 7 10 80 chain 28581 chr9 141213431 + 72271755 72272060 AluYb8 318 - 13 318 90818 305 chain 164220 chr9 141213431 + 72294967 72296779 L1PA3long 6157 - 1 1815 22778 153 0 1 1017 1 2 641 chain 123710 chr9 141213431 + 72296779 72298137 L1PA3long 6157 + 2965 4326 29806 1192 0 3 166 chain 4136 chr9 141213431 + 72312651 72312708 MLT1A0 366 - 309 366 205422 4 1 0 5 0 1 47 chain 3740 chr9 141213431 + 72348729 72348776 MIR 256 - 0 47 211320 47 chain 29051 chr9 141213431 + 72376054 72376361 AluYb8 318 + 0 307 88761 307 chain 75748 chr9 141213431 + 72378052 72379020 LTR5_Hs 974 - 0 974 45623 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 30277 chr9 141213431 + 72385316 72385789 MLT2A1 477 - 0 466 84006 20 1 0 26 0 1 5 8 18 4 1 0 6 7 0 12 13 1 55 0 1 17 0 1 98 19 17 22 0 4 26 0 1 85 2 0 46 chain 6229 chr9 141213431 + 72386597 72386677 MER2 342 - 127 207 183321 80 chain 49823 chr9 141213431 + 72388458 72389112 L1PA7 6471 + 5831 6458 59139 100 0 6 160 31 0 355 2 0 6 chain 16993 chr9 141213431 + 72391315 72391657 L1PB1 5432 - 2 318 135612 4 1 0 11 1 0 12 10 15 18 1 0 24 2 0 14 1 0 5 7 5 14 1 0 8 11 0 19 1 0 45 1 0 15 2 1 51 3 1 9 6 2 12 1 0 11 1 0 20 chain 16203 chr9 141213431 + 72405702 72405941 MER44A 345 + 94 345 137743 7 0 8 74 2 5 61 11 12 84 chain 66801 chr9 141213431 + 72414490 72415315 SVA_A 1864 + 663 1864 49733 65 0 39 119 1 0 24 3 0 38 38 379 537 chain 25327 chr9 141213431 + 72425287 72425570 AluY 311 + 17 301 103082 109 0 1 174 chain 30700 chr9 141213431 + 72438551 72438949 LTR7 482 - 15 482 83035 175 0 31 146 8 46 69 chain 11339 chr9 141213431 + 72447626 72447758 L1PA4 6152 - 14 146 154923 132 chain 247079 chr9 141213431 + 72451658 72454363 L1PA3long 6157 - 10 2714 16391 2198 1 0 506 chain 24899 chr9 141213431 + 72467615 72467965 THE1B 368 + 0 357 105347 13 2 0 27 0 5 12 1 12 103 3 2 18 6 0 165 chain 150519 chr9 141213431 + 72495382 72499101 L1MA2 4263 - 159 3125 24534 46 7 0 93 2 1 6 1 0 149 11 9 138 1 0 75 4 0 20 4 0 348 0 1 308 5 6 252 14 8 39 1585 864 58 7 6 176 9 7 10 15 16 49 0 3 83 18 9 158 10 8 5 0 2 13 chain 5099 chr9 141213431 + 72506278 72506343 ORSL 269 - 3 67 194089 60 1 0 4 chain 68524 chr9 141213431 + 72515787 72516929 L1PA5 6144 - 4 823 49027 168 1 0 72 324 0 94 0 1 107 6 7 370 chain 18296 chr9 141213431 + 72524791 72525868 L1MB8 1703 - 41 564 132085 26 17 8 25 136 80 88 2 0 5 5 7 29 1 5 43 579 85 60 25 26 36 chain 57130 chr9 141213431 + 72536382 72537123 MER4E 760 + 0 749 54443 22 1 3 139 0 1 69 1 0 51 0 1 74 27 31 352 0 1 5 chain 21267 chr9 141213431 + 72537922 72538183 AluY 311 + 25 286 122965 261 chain 3253 chr9 141213431 + 72565393 72565440 L1MB3 1562 - 10 56 219937 29 2 1 16 chain 3583 chr9 141213431 + 72573535 72573580 MER34C_ 573 - 511 556 213949 45 chain 25712 chr9 141213431 + 72591633 72591932 AluSp 311 + 12 311 101241 299 chain 81985 chr9 141213431 + 72624290 72625396 HSMAR2 1300 + 8 1120 42768 54 4 2 173 0 1 40 0 9 465 2 7 34 3 4 250 0 2 9 8 0 17 1 0 22 3 2 21 chain 5131 chr9 141213431 + 72632458 72632524 MADE1 96 + 1 83 193768 48 0 16 18 chain 90745 chr9 141213431 + 72634266 72635528 L1PBa1 4058 - 2149 3526 39377 242 1 0 130 0 4 32 1 2 41 0 2 5 7 5 114 7 8 313 4 5 39 3 93 185 80 99 58 chain 20437 chr9 141213431 + 72639443 72639776 THE1C 375 - 25 375 125789 156 12 12 64 41 58 60 chain 115531 chr9 141213431 + 72639776 72641369 THE1C-int 1605 - 0 1605 32600 9 0 1 250 1 0 4 1 2 68 30 31 86 1 2 389 17 26 23 3 0 197 0 3 8 13 6 48 0 7 111 1 7 126 6 1 182 7 6 12 chain 28870 chr9 141213431 + 72641369 72641741 THE1C 375 - 0 375 89581 25 1 0 210 1 5 135 chain 23568 chr9 141213431 + 72652192 72652509 AluYc 301 + 0 298 112755 114 16 0 70 4 1 113 chain 36589 chr9 141213431 + 72662116 72662583 L1PA8 5853 - 0 462 74113 64 1 2 27 1 0 19 2 1 58 1 0 74 2 0 44 1 0 173 chain 3076 chr9 141213431 + 72671736 72671847 MER1A 529 - 255 367 223390 10 2 0 17 41 44 4 1 0 8 1 0 16 0 2 11 chain 9467 chr9 141213431 + 72679108 72679301 L1PB1 5432 - 12 193 163238 16 1 0 13 1 0 21 1 0 6 1 0 4 3 5 9 2 0 15 2 0 6 1 0 16 17 13 16 1 0 41 chain 27941 chr9 141213431 + 72732160 72732532 L1PA7 6471 + 6080 6466 93195 137 10 14 67 10 25 8 2 0 128 3 0 7 chain 67306 chr9 141213431 + 72754041 72754775 L1PA3long 6157 - 2 737 49525 256 0 1 154 1 0 52 0 1 271 chain 13967 chr9 141213431 + 72786659 72786839 MER30 238 - 11 208 144686 97 4 21 79 chain 456867 chr9 141213431 + 72794797 72800630 L1PA8 5853 - 0 5802 8516 89 6 5 18 2 1 18 0 22 12 2 1 5 1 0 74 2 0 43 2 1 361 4 3 116 0 2 71 5 6 96 3 10 155 0 1 55 0 1 471 2 1 31 2 1 101 1 0 299 0 1 815 1 3 17 4 7 52 1 0 70 0 3 117 4 5 418 0 4 253 3 1 110 0 2 70 36 0 597 1 0 4 0 1 76 0 1 10 0 1 261 0 3 95 21 21 457 23 11 12 15 15 81 0 13 23 0 2 42 50 14 13 6 5 5 2 0 21 chain 11893 chr9 141213431 + 72803503 72803652 U2 167 - 3 157 152631 18 0 7 9 2 0 120 chain 556439 chr9 141213431 + 72813972 72819997 L1PA2 6032 - 0 6031 679 151 0 7 3312 1 0 2561 chain 517684 chr9 141213431 + 72821545 72827671 L1PA5 6144 - 2 6144 5402 7 4 0 754 1 2 92 1 0 15 2 1 901 1 0 376 0 3 306 3 4 426 1 3 17 1 4 11 9 1 49 1 0 349 0 1 4 1 0 396 0 3 109 1 0 207 0 3 136 6 7 225 0 4 22 0 1 270 1 0 252 13 11 1026 4 18 126 chain 451193 chr9 141213431 + 72848936 72855066 L1PA7 6471 + 5 6468 8729 131 20 6 79 152 349 78 0 19 50 36 45 31 8 84 11 19 19 138 1 22 57 17 0 95 1 0 27 10 35 44 0 18 9 54 35 95 11 20 1137 1 2 1587 4 5 12 0 1 867 1 3 405 0 1 100 0 5 83 2 0 290 0 1 467 chain 510077 chr9 141213431 + 72855228 72861387 L1PA6 6164 + 0 6162 6158 236 1 3 158 1 0 117 0 3 50 1 0 10 0 1 133 0 1 205 0 1 542 0 1 392 0 5 156 5 8 202 0 2 102 1 2 72 0 1 203 2 1 582 0 1 1144 24 0 30 1 5 231 10 5 156 0 1 550 0 4 233 1 2 345 0 1 125 0 1 113 0 1 25 chain 9076 chr9 141213431 + 72864015 72864186 L1PB3 3668 + 3410 3566 165182 68 39 26 24 3 1 37 chain 4031 chr9 141213431 + 72868915 72868967 MamRep1527 640 - 309 360 206921 5 1 0 46 chain 19333 chr9 141213431 + 72917138 72917419 AluSc5 308 + 4 291 129135 26 0 2 9 18 21 113 0 1 59 1 4 6 3 0 46 chain 7063 chr9 141213431 + 72926528 72926617 HY4 93 - 3 93 176998 49 0 1 40 chain 26045 chr9 141213431 + 72951751 72952090 THE1B 368 - 11 368 99845 185 7 6 24 7 11 76 0 15 40 chain 62535 chr9 141213431 + 72956617 72957298 L1PA3long 6157 + 5459 6140 51662 681 chain 34688 chr9 141213431 + 72978510 72979052 LTR12F 595 - 12 595 76643 62 22 0 37 24 12 254 2 44 26 24 20 10 2 39 79 chain 7683 chr9 141213431 + 72993069 72993171 MSTA 426 + 302 407 173027 39 3 4 17 0 2 43 chain 8042 chr9 141213431 + 73041024 73041125 LTR16E1 515 - 35 136 170805 101 chain 4051 chr9 141213431 + 73046789 73047010 L1MA4 2864 - 166 383 76698 5 2 0 22 8 5 55 0 2 93 20 19 16 chain 83399 chr9 141213431 + 73047380 73048269 L1HS 6032 + 5142 6031 42159 889 chain 6434 chr9 141213431 + 73048328 73048679 L1MA4 2864 - 888 1237 76698 104 1 0 89 25 24 5 0 1 84 1 0 42 chain 20823 chr9 141213431 + 73073044 73073371 MER4B 649 - 256 649 124531 34 1 16 126 0 23 20 27 58 6 1 0 85 2 0 25 chain 9680 chr9 141213431 + 73139250 73139416 MSTA 426 - 236 426 162194 34 35 59 97 chain 6052 chr9 141213431 + 73251433 73251575 MER53 195 - 32 187 184793 26 14 16 13 31 41 43 0 1 15 chain 5073 chr9 141213431 + 73257430 73257560 MER5B 177 + 17 162 194388 29 14 27 18 31 33 38 chain 189664 chr9 141213431 + 73259360 73261644 L1PA7 6471 + 4195 6470 20087 1302 23 1 116 0 3 92 4 5 142 0 3 131 0 3 17 0 2 231 0 1 226 chain 211384 chr9 141213431 + 73272418 73275087 MER4-int 2692 + 4 2692 18407 7 1 0 25 11 0 53 11 10 19 4 0 60 0 1 168 0 1 36 0 2 46 0 2 105 0 9 106 0 1 57 11 7 59 0 13 661 0 1 412 1 0 251 0 4 139 3 4 12 0 1 4 6 9 20 1 2 195 0 1 185 chain 31370 chr9 141213431 + 73275095 73275556 MER4A1 472 + 0 470 81873 225 0 21 20 26 5 84 23 32 83 chain 156214 chr9 141213431 + 73275558 73277846 L1PB2 3958 + 1424 3745 23831 143 8 10 18 1 2 285 0 1 35 6 1 324 1 0 5 1 2 204 0 14 22 1 2 40 10 8 23 42 43 83 1 4 33 0 1 166 1 0 30 2 1 206 2 3 4 1 0 66 1 2 10 11 35 14 0 4 39 2 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73374894 L1PA7 6471 + 1920 6465 11032 232 304 0 217 1 0 134 20 38 91 42 7 49 8 9 177 1 0 220 0 6 58 0 1 338 1 0 31 1 0 16 0 4 58 0 1 397 1 0 5 2 0 125 1 9 1478 1 0 59 12 11 689 0 13 66 3 0 6 chain 21154 chr9 141213431 + 73402927 73403158 L1PA2 6032 - 0 231 123360 231 chain 31093 chr9 141213431 + 73403428 73403856 MER1A 529 - 0 443 82354 63 7 9 140 15 10 120 0 14 77 0 4 6 chain 21829 chr9 141213431 + 73420229 73420478 AluY 311 + 60 311 120901 71 0 2 178 chain 23744 chr9 141213431 + 73446959 73447218 L1PA3long 6157 + 5898 6157 111814 259 chain 17548 chr9 141213431 + 73505897 73506092 L1PA5 6144 + 5944 6139 134131 195 chain 84727 chr9 141213431 + 73529837 73531452 L1M1 2793 + 772 2104 41627 30 2 1 28 2 0 8 1 0 51 75 85 28 5 4 74 0 4 59 0 21 14 318 0 69 3 0 25 12 11 78 0 1 61 4 0 247 2 0 125 12 13 126 5 13 59 4 5 49 1 0 29 0 5 9 chain 25673 chr9 141213431 + 73553590 73553902 AluY 311 + 4 311 101393 119 6 1 187 chain 50854 chr9 141213431 + 73573500 73574079 L1PA3long 6157 + 5574 6157 58396 298 0 3 127 7 8 147 chain 22063 chr9 141213431 + 73580430 73580722 L1PREC2 3366 - 1370 1649 119955 200 14 1 78 chain 31323 chr9 141213431 + 73583693 73584058 L1PA7 6471 + 5225 5590 81950 365 chain 18126 chr9 141213431 + 73584059 73584273 L1PA7 6471 + 6179 6393 132529 214 chain 7561 chr9 141213431 + 73586722 73586820 L1MB7 1623 + 1094 1191 173795 93 1 0 4 chain 3131 chr9 141213431 + 73588511 73588599 MER63A 208 + 52 153 222347 15 36 49 37 chain 4498 chr9 141213431 + 73602463 73602513 MADE1 96 + 46 96 200802 50 chain 2802 chr9 141213431 + 73635550 73635580 L1ME3A 1206 + 642 672 228712 30 chain 6956 chr9 141213431 + 73637666 73637750 L1PA8 5853 + 5769 5853 177772 84 chain 39200 chr9 141213431 + 73687587 73688074 LTR3B_ 500 + 0 493 70454 298 1 0 34 0 6 10 0 1 144 chain 4068 chr9 141213431 + 73689437 73689483 MADE1 96 + 0 46 206339 46 chain 111344 chr9 141213431 + 73707737 73709173 L1PA8 5853 + 4419 5853 33848 46 0 1 111 0 11 249 0 1 168 9 6 82 5 4 359 0 1 106 1 0 46 2 0 68 2 1 9 6 0 51 3 2 19 3 2 91 chain 3808 chr9 141213431 + 73761972 73762094 MLT1K 546 + 411 527 210256 15 61 55 46 chain 78317 chr9 141213431 + 73785404 73786454 MER11C 1089 + 0 1073 44366 58 1 5 40 0 4 144 0 9 57 0 4 65 1 0 146 48 46 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 500561 chr9 141213431 + 73811787 73817334 L1PA3long 6157 - 0 5591 6805 100 0 1 46 9 7 2711 0 1 1997 14 59 645 1 0 24 chain 114658 chr9 141213431 + 73818831 73820122 L1PA4 6152 + 4843 6134 32897 1291 chain 25192 chr9 141213431 + 73856281 73856562 L1PA4 6152 + 5860 6141 103788 281 chain 15346 chr9 141213431 + 73868527 73868822 L1MA8 2339 + 1702 1986 140351 39 1 0 89 58 54 47 4 0 18 7 5 32 chain 319864 chr9 141213431 + 73873823 73877881 L1PA7 6471 - 12 6464 12603 469 0 3 284 5 3 86 0 3 17 0 1 33 4 8 77 1 6 490 1 0 174 0 2 224 0 1 7 1 0 108 4 2385 687 0 3 106 9 11 471 11 0 386 17 2 200 0 15 67 3 7 116 chain 22277 chr9 141213431 + 73921519 73921789 AluSc 308 + 10 281 119006 194 7 8 69 chain 152981 chr9 141213431 + 73951133 73952993 L1PA7 6471 + 4568 6455 24234 39 0 2 65 0 4 172 0 1 98 1 0 587 4 21 5 0 1 36 0 4 18 1 0 42 8 11 13 14 17 191 3 0 91 3 0 469 chain 20986 chr9 141213431 + 73955270 73955613 THE1B 368 + 0 368 123967 44 5 20 45 9 10 51 1 0 28 35 45 125 chain 69829 chr9 141213431 + 73959833 73960660 L1PA7 6471 + 5634 6465 48462 66 1 4 554 0 1 206 chain 50272 chr9 141213431 + 73987619 73990037 L1PA10 4194 + 1568 4116 58807 76 1711 1835 325 1 3 94 0 3 131 0 1 80 chain 50616 chr9 141213431 + 74003981 74004872 L1PB1 5432 + 4544 5424 58567 65 8 13 83 0 2 68 1 0 29 0 2 5 9 5 140 0 1 80 9 10 5 1 0 51 15 11 24 26 20 9 2 0 50 5 4 16 1 0 44 41 28 18 28 42 21 2 1 13 1 0 16 1 0 4 chain 507683 chr9 141213431 + 74022024 74028169 L1PA6 6164 + 0 6161 6351 194 1 2 304 11 10 90 5 6 171 0 1 1121 4 0 433 1 2 13 1 0 76 2 1 16 1 4 740 9 7 49 0 4 448 0 2 10 0 1 46 0 3 612 0 2 149 0 4 711 0 1 4 1 0 78 2 0 105 1 4 579 0 5 6 1 3 8 6 0 136 chain 12840 chr9 141213431 + 74035966 74036130 L1PA16 3655 + 3428 3589 148884 149 3 0 12 chain 4756 chr9 141213431 + 74042215 74042341 MER5A 189 + 39 164 197840 37 55 54 34 chain 26306 chr9 141213431 + 74048106 74048463 THE1C 375 + 0 360 98807 63 0 2 115 18 20 150 2 1 9 chain 25772 chr9 141213431 + 74050879 74051583 THE1A 353 + 0 353 101002 108 19 18 136 21 0 26 329 0 65 chain 24365 chr9 141213431 + 74075287 74075657 THE1C 375 - 0 375 108293 26 1 0 162 12 13 4 1 0 10 14 18 38 6 8 96 chain 36508 chr9 141213431 + 74087334 74087822 HERV1_LTRd 520 - 9 520 74231 18 0 7 18 1 0 36 5 6 64 2 4 20 1 0 200 2 1 71 0 16 50 chain 175410 chr9 141213431 + 74111545 74113481 L1PA3long 6157 + 4213 6157 21408 4 1 0 1152 4 13 775 chain 6097 chr9 141213431 + 74114717 74114797 L1M2c 2366 + 1788 1862 184437 21 6 0 53 chain 16438 chr9 141213431 + 74122442 74122741 THE1B 368 + 0 306 137099 109 13 14 45 70 76 62 chain 54208 chr9 141213431 + 74123305 74124105 HUERS-P3b-int 2065 - 21 794 56224 6 0 7 59 0 2 28 11 10 48 4 0 62 8 7 14 0 2 70 3 1 91 1 0 23 1 0 97 29 2 44 1 0 200 chain 23775 chr9 141213431 + 74125223 74125612 THE1D 372 - 0 372 111627 119 9 15 11 2 0 5 35 32 112 18 0 78 chain 45457 chr9 141213431 + 74126973 74127539 L1PA6 6164 - 6 577 62541 96 7 10 225 0 1 21 0 1 217 chain 26051 chr9 141213431 + 74131132 74131441 L1PA7 6471 + 6162 6467 99823 159 2 0 138 2 0 8 chain 8705 chr9 141213431 + 74206972 74207370 MER85 139 - 0 130 167168 40 0 10 42 278 0 38 chain 520439 chr9 141213431 + 74210481 74216891 L1PA5 6144 + 0 6132 5110 19 3 16 92 11 32 290 0 7 468 0 1 84 2 0 160 9 0 278 299 0 607 3 0 38 0 1 220 2 1 909 15 6 1021 1 0 865 0 1 149 0 1 677 0 1 188 chain 32130 chr9 141213431 + 74221398 74221823 MER57A1 433 - 2 433 80642 35 0 3 106 14 15 93 0 2 177 chain 25927 chr9 141213431 + 74269394 74269668 AluYb8 318 + 38 312 100310 274 chain 4810 chr9 141213431 + 74302188 74302266 MER1A 529 + 418 495 197228 39 10 9 29 chain 20027 chr9 141213431 + 74328030 74328411 THE1B 368 + 0 368 127054 13 2 0 24 0 5 40 75 77 13 3 2 12 14 0 50 0 1 75 4 0 56 chain 16962 chr9 141213431 + 74354582 74354792 MER30 238 + 0 238 135694 100 0 28 110 chain 25856 chr9 141213431 + 74356101 74356404 AluSp 311 - 1 303 100624 97 1 0 205 chain 6591 chr9 141213431 + 74368893 74368967 L1PA6 6164 + 5918 5992 180532 74 chain 14514 chr9 141213431 + 74368968 74369136 L1PA6 6164 + 5994 6162 142841 168 chain 4196 chr9 141213431 + 74393122 74393172 MLT1H2 457 + 66 116 204609 50 chain 36440 chr9 141213431 + 74399696 74400163 L1PA8 5853 + 5393 5853 74313 171 1 0 45 2 0 70 1 0 61 2 1 19 1 0 87 1 0 6 chain 77623 chr9 141213431 + 74463978 74464937 L1PA8 5853 + 4808 5757 44685 57 1 0 145 2 0 167 1 0 380 8 7 46 2 0 77 3 1 54 1 0 15 chain 33839 chr9 141213431 + 74466359 74469542 Tigger1 2417 - 627 2403 77873 62 0 6 140 2582 1164 112 0 3 21 9 0 8 16 16 61 3 0 8 2 6 72 9 8 51 14 25 13 chain 6127 chr9 141213431 + 74517373 74517450 HY3 101 - 2 79 184209 77 chain 12287 chr9 141213431 + 74529151 74529355 MER30 238 + 0 238 151049 14 16 34 59 4 0 13 1 18 58 5 8 34 chain 56058 chr9 141213431 + 74535758 74536652 MER4D0 881 + 0 881 55085 52 6 5 58 5 0 3 1 0 98 7 9 99 1 0 9 1 2 27 1 0 36 5 17 110 44 43 71 3 0 5 16 6 114 6 1 116 chain 7838 chr9 141213431 + 74549398 74549502 L1MB3 1562 + 612 715 172084 16 1 0 87 chain 42158 chr9 141213431 + 74569284 74569803 MER41A 554 - 0 554 66443 54 0 37 309 0 1 60 3 0 93 chain 25422 chr9 141213431 + 74573182 74573477 AluSp 311 - 16 311 102584 295 chain 2417 chr9 141213431 + 74578186 74578269 LTR17 781 - 0 83 51536 83 chain 110712 chr9 141213431 + 74578273 74579651 LTR12C 1709 + 0 1709 34026 296 0 1 156 36 0 11 11 0 7 0 48 236 0 2 37 8 324 106 0 4 107 0 8 284 1 0 82 chain 20150 chr9 141213431 + 74579651 74580343 LTR17 781 - 83 776 51536 358 0 2 11 1 0 322 chain 34203 chr9 141213431 + 74580807 74581245 MER57A1 433 + 0 433 77343 112 8 0 90 0 2 78 0 1 150 chain 39720 chr9 141213431 + 74583572 74584084 LTR10A 586 - 12 566 69728 9 1 0 23 0 5 23 0 1 213 1 0 17 6 35 173 0 1 7 0 8 39 chain 26255 chr9 141213431 + 74603320 74603625 AluSc5 308 - 3 308 99002 305 chain 33876 chr9 141213431 + 74607532 74607961 MER57A1 433 + 0 430 77818 276 0 1 153 chain 22953 chr9 141213431 + 74608936 74609223 AluY 311 + 0 294 115836 123 1 0 9 1 2 9 1 4 5 3 0 15 0 7 120 chain 146592 chr9 141213431 + 74613618 74615539 L1P2 5180 - 3231 5178 25072 20 0 4 373 0 1 121 8 13 399 2 1 219 0 15 268 1 0 8 11 10 96 26 33 53 76 75 46 2 1 42 2 1 148 chain 14137 chr9 141213431 + 74625988 74626160 MER4A 717 - 543 717 144081 52 0 1 72 0 1 48 chain 13721 chr9 141213431 + 74630857 74631036 MER4A1 472 - 0 181 145539 70 5 7 104 chain 40836 chr9 141213431 + 74643783 74644379 MER41B 635 + 24 614 68124 82 0 1 21 12 1 256 4 5 57 25 24 95 16 20 28 chain 10753 chr9 141213431 + 74662624 74662754 MER50 708 + 571 701 157190 59 1 0 4 0 1 66 chain 24317 chr9 141213431 + 74665381 74665672 AluYk4 311 + 7 302 108565 124 0 4 167 chain 111974 chr9 141213431 + 74685071 74686912 L1PB2 3958 + 2313 3838 33675 50 0 5 122 10 3 208 8 9 214 1 0 148 306 10 177 8 0 45 10 8 51 1 0 12 4 3 40 1 0 10 30 30 87 1 0 72 1 0 36 0 1 27 1 0 71 2 0 23 1 0 63 chain 525800 chr9 141213431 + 74687115 74693887 L1PA7 6471 + 0 6467 4601 405 8 9 60 1 0 132 16 16 76 33 31 307 1 4 70 2 0 570 21 8 738 0 1 81 0 1 50 0 1 75 5 6 656 4 5 50 1 2 174 0 1 906 0 10 7 2 5 68 6 10 31 317 0 6 1 0 6 0 1 70 0 1 168 5 6 194 0 1 602 1 0 77 0 2 759 2 0 8 chain 9373 chr9 141213431 + 74706919 74707031 AluY 311 + 11 131 163695 46 0 8 66 chain 385557 chr9 141213431 + 74711102 74715512 L1PA5 6144 + 1701 6131 10590 729 0 4 262 4 0 505 0 1 77 0 1 743 0 3 184 3 0 388 7 0 320 0 26 439 1 0 748 chain 33879 chr9 141213431 + 74731699 74732092 L1PA5 6144 - 6 399 77811 215 1 0 111 1 2 65 chain 45502 chr9 141213431 + 74752752 74753312 LTR19B 566 - 0 566 62494 52 4 1 15 0 5 59 0 2 135 0 1 123 0 1 172 chain 80301 chr9 141213431 + 74767381 74768260 L1PA3long 6157 - 674 1553 43473 879 chain 55861 chr9 141213431 + 74768272 74768881 L1PA3long 6157 + 5523 6149 55205 345 0 17 264 chain 25216 chr9 141213431 + 74779617 74779921 AluY 311 + 0 298 103653 126 6 0 172 chain 21058 chr9 141213431 + 74796284 74796540 AluSg7 307 - 52 307 123698 123 1 2 66 2 0 64 chain 9258 chr9 141213431 + 74805345 74805512 Tigger2b_Pri 1066 + 848 1001 164278 27 0 1 44 25 9 16 8 9 47 chain 23436 chr9 141213431 + 74811504 74811836 L1PA8 5853 - 0 325 113441 93 1 0 19 2 1 52 8 6 73 2 0 36 18 17 28 chain 28390 chr9 141213431 + 74828437 74828741 AluYk11 308 + 0 304 91624 304 chain 14861 chr9 141213431 + 74861801 74861991 MER107 203 + 0 203 141752 18 0 16 40 1 0 91 2 0 38 chain 9339 chr9 141213431 + 74868776 74868880 L1PA3long 6157 + 6053 6157 163861 104 chain 25652 chr9 141213431 + 74880075 74880414 THE1A 353 - 11 353 101486 64 1 0 120 0 5 42 9 8 103 chain 126204 chr9 141213431 + 74880414 74881966 THE1A-int 1579 - 0 1573 29032 80 0 5 23 5 6 88 0 13 1055 4 5 266 0 1 31 chain 26003 chr9 141213431 + 74881972 74882325 THE1A 353 - 0 353 100002 18 3 0 5 13 18 110 1 0 92 1 0 110 chain 22780 chr9 141213431 + 74884842 74885122 AluSp 311 + 11 297 116676 97 0 6 183 chain 41427 chr9 141213431 + 74906016 74906509 THE1B-int 1605 - 1087 1605 67383 61 0 25 432 chain 28037 chr9 141213431 + 74906509 74906884 THE1B 368 - 0 368 92869 125 7 0 41 2 0 31 1 0 129 0 5 24 2 0 13 chain 9260 chr9 141213431 + 74914854 74915093 MLT1B 390 + 143 390 164262 25 106 114 108 chain 3458 chr9 141213431 + 74935724 74935770 Tigger3b 1229 + 202 253 216028 6 0 4 33 0 1 7 chain 46053 chr9 141213431 + 74937798 74938348 LTR19B 566 - 0 566 61993 49 3 0 21 0 2 43 0 1 289 3 19 142 chain 33395 chr9 141213431 + 74943719 74944120 L1PA6 6164 - 4 406 78573 142 1 2 258 chain 23037 chr9 141213431 + 74959084 74959385 AluSp 311 - 10 301 115464 7 8 0 174 1 0 94 1 0 16 chain 14923 chr9 141213431 + 74991021 74991194 AluSp 311 + 104 277 141566 173 chain 24786 chr9 141213431 + 75009852 75010139 AluSq 315 + 9 300 105963 123 0 3 8 2 3 154 chain 47750 chr9 141213431 + 75014132 75014860 L1PA11 4918 + 3839 4567 60653 474 0 4 14 5 0 57 42 49 37 2 0 13 2 1 16 40 38 12 1 0 13 chain 22959 chr9 141213431 + 75029042 75029320 AluSg 306 + 11 293 115809 66 0 1 64 1 0 5 0 3 129 0 1 13 chain 10859 chr9 141213431 + 75044901 75045047 L1PA8 5853 - 0 144 156750 92 2 1 19 2 1 31 chain 278612 chr9 141213431 + 75065634 75068667 L1PA3long 6157 + 3125 6157 14713 2901 1 0 131 chain 105170 chr9 141213431 + 75094278 75095677 LTR12C 1709 - 0 1706 35460 84 13 12 55 1 0 267 0 1 7 0 1 54 11 4 106 4 2 4 1 0 98 0 278 267 13 8 70 10 53 248 33 34 53 chain 94606 chr9 141213431 + 75101853 75102989 HERVL-int 5654 + 4522 5654 38184 231 0 1 4 1 0 676 0 1 75 1 0 66 8 4 74 chain 28194 chr9 141213431 + 75102997 75103361 MLT2A1 477 + 8 384 92333 20 0 5 53 0 2 54 8 9 17 1 5 211 chain 71029 chr9 141213431 + 75127950 75128746 L1PA4 6152 + 5352 6151 47912 188 0 3 299 0 1 160 1 0 148 chain 25783 chr9 141213431 + 75152440 75152779 MER4D0 881 - 0 351 100948 118 10 11 156 0 1 39 0 10 16 chain 3868 chr9 141213431 + 75153965 75154012 MSTB1-int 1597 - 1189 1236 209340 47 chain 16721 chr9 141213431 + 75163216 75163500 AluSg7 307 + 11 298 136337 37 6 5 22 1 0 56 24 23 35 1 0 10 4 0 12 8 19 68 chain 16828 chr9 141213431 + 75165394 75165595 AluY 311 + 102 304 136043 30 0 1 171 chain 18416 chr9 141213431 + 75180578 75180872 THE1B 368 - 62 361 131729 63 2 1 12 1 0 16 1 5 9 7 10 21 1 0 87 13 14 61 chain 19993 chr9 141213431 + 75183955 75184221 MER2 342 - 0 271 127164 59 2 4 198 0 3 7 chain 24902 chr9 141213431 + 75196875 75197161 AluSp 311 - 14 300 105328 286 chain 4738 chr9 141213431 + 75220130 75220192 MLT1F2 592 - 8 73 198051 54 0 3 8 chain 3535 chr9 141213431 + 75227527 75227566 MER58A 224 - 143 182 214795 39 chain 3515 chr9 141213431 + 75251727 75251766 MER20 218 + 30 69 215141 39 chain 2770 chr9 141213431 + 75256467 75256499 MER45A 178 - 55 87 229195 32 chain 13856 chr9 141213431 + 75266698 75266971 L1PB1 5432 - 10 264 145046 18 1 0 12 1 0 22 1 0 24 2 0 13 10 7 18 22 14 13 1 0 43 4 3 14 2 1 52 chain 19381 chr9 141213431 + 75275823 75276061 AluSc8 310 + 39 278 129000 78 3 1 14 0 3 143 chain 22830 chr9 141213431 + 75300013 75300277 AluYk4 311 - 3 267 116445 264 chain 289597 chr9 141213431 + 75321358 75325696 L1PB1 5432 - 8 3891 14047 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 16 6 6 2 0 15 1 0 45 6 5 10 2 1 50 18 12 14 344 6 23 5 0 8 1 4 477 3 0 49 0 1 345 4 0 274 0 1 102 8 6 5 0 1 106 1 0 220 0 3 56 0 9 19 0 3 189 110 0 32 0 1 303 0 17 42 1 0 77 16 0 270 4 1 55 1 3 12 0 6 90 0 5 152 15 21 199 0 1 187 0 3 213 4 0 6 chain 521314 chr9 141213431 + 75325702 75332135 L1PA7 6471 - 3 6471 5027 9 2 0 159 6 23 574 1 0 646 1 0 7 0 1 228 0 2 442 6 0 541 0 2 278 9 23 10 1 0 26 23 15 382 0 4 401 1 0 62 0 1 190 0 1 300 0 4 534 1 4 315 9 12 518 1 0 399 14 8 85 12 22 240 chain 10980 chr9 141213431 + 75332140 75332274 L1PBa 3878 - 2126 2260 156273 134 chain 20616 chr9 141213431 + 75340305 75340609 MLT2A1 477 - 81 389 125241 11 3 1 44 1 2 152 14 18 25 0 1 54 chain 38600 chr9 141213431 + 75382956 75383389 L1PA7 6471 + 6027 6461 71292 333 0 1 100 chain 46659 chr9 141213431 + 75410369 75411144 L1PA14 3548 + 90 804 61490 58 5 0 59 11 10 17 2 1 28 7 5 31 5 3 185 4 0 100 6 7 14 80 34 26 1 0 136 chain 35848 chr9 141213431 + 75417341 75417827 L1PA10 4194 + 2172 4115 75062 248 6 1464 198 3 2 31 chain 153015 chr9 141213431 + 75420454 75422168 SVA_F 1814 - 2 1814 24226 10 5 0 4 0 1 626 0 1 4 1 0 155 0 64 60 1 2 257 0 37 591 chain 45741 chr9 141213431 + 75446359 75446869 L1PA5 6144 - 4 514 62280 510 chain 163238 chr9 141213431 + 75454503 75457266 SVA_F 1814 - 0 1804 22917 540 388 0 311 0 15 61 49 0 32 1 0 28 538 2 815 chain 9143 chr9 141213431 + 75455109 75455257 SVA_F 1814 - 655 803 133439 148 chain 10667 chr9 141213431 + 75455259 75455431 SVA_F 1814 - 676 843 99318 10 1 0 127 4 0 30 chain 716 chr9 141213431 + 75455803 75455841 SVA_F 1814 - 638 676 148285 38 chain 25392 chr9 141213431 + 75455913 75456188 SVA_F 1814 - 571 848 92094 115 0 1 126 0 1 34 chain 3142 chr9 141213431 + 75456191 75456252 SVA_F 1814 - 866 926 123483 51 1 0 9 chain 1795 chr9 141213431 + 75456335 75456418 SVA_F 1814 - 593 676 152277 83 chain 3146 chr9 141213431 + 75456419 75456451 SVA_F 1814 - 676 708 222057 32 chain 87032 chr9 141213431 + 75465358 75466321 SVA_D 2077 - 18 1028 40765 626 0 45 63 1 2 125 1 2 147 chain 922 chr9 141213431 + 75466350 75466785 SVA_F 1814 - 951 1426 118785 199 0 40 236 chain 65458 chr9 141213431 + 75475910 75477186 L1PB2 3958 - 120 1056 50352 63 1 0 26 2 0 70 1 0 62 1 0 62 9 10 71 19 26 9 2 0 57 8 7 14 1 0 54 2 0 89 9 0 51 0 3 32 329 0 21 1 0 187 1 0 22 chain 174862 chr9 141213431 + 75492443 75494970 L1PB1 5432 + 2915 5424 21483 320 1 0 6 29 31 197 1 2 99 0 11 63 1 0 88 1 0 4 12 7 369 0 1 6 1 8 12 0 1 108 1 0 319 0 1 40 12 13 45 2 1 35 1 3 92 1 9 9 8 0 288 38 31 13 16 11 9 2 0 46 0 1 4 5 3 10 11 10 40 1 0 9 37 26 11 8 5 14 2 0 18 0 1 26 1 0 13 1 0 16 1 0 4 chain 23496 chr9 141213431 + 75535889 75536177 AluY 311 + 8 303 113143 118 0 1 93 0 5 52 0 1 25 chain 17550 chr9 141213431 + 75536439 75536626 L1HS 6032 - 0 187 134123 187 chain 6988 chr9 141213431 + 75537435 75537519 MER30B 195 - 14 98 177557 84 chain 29047 chr9 141213431 + 75570783 75571162 THE1C 375 - 0 375 88773 25 1 0 241 0 1 4 2 0 91 2 0 13 chain 72632 chr9 141213431 + 75576555 75577444 L1PA7 6471 + 5573 6469 47201 29 8 20 699 3 1 135 3 0 12 chain 22053 chr9 141213431 + 75591377 75591639 L1PA7 6471 + 6197 6459 120009 262 chain 22527 chr9 141213431 + 75669530 75669769 AluYa5 310 + 71 310 117904 239 chain 4622 chr9 141213431 + 75672763 75672876 MLT1B 390 - 290 390 199385 45 43 30 25 chain 7191 chr9 141213431 + 75681299 75681386 MSTB 430 + 1 88 176134 87 chain 16369 chr9 141213431 + 75687292 75687630 L1PB1 5432 + 5114 5423 137285 21 1 0 11 1 0 10 2 0 3 2 0 9 2 0 6 3 5 41 2 1 15 2 1 45 1 0 14 3 0 6 14 6 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 74864 chr9 141213431 + 75702122 75703090 LTR5_Hs 974 - 0 973 46082 103 20 18 19 11 18 64 8 0 7 4 12 77 1 0 188 0 1 181 0 1 118 1 0 166 chain 11941 chr9 141213431 + 75741023 75741187 L1PA8 5853 - 0 163 152440 93 1 0 19 2 1 39 0 1 10 chain 27044 chr9 141213431 + 75757622 75757929 AluYa5 310 - 2 309 96136 307 chain 12929 chr9 141213431 + 75790355 75790508 MER41B 635 + 481 635 148508 30 0 1 123 chain 5890 chr9 141213431 + 75795142 75795208 L1PA5 6144 + 6073 6139 186278 66 chain 8598 chr9 141213431 + 75805543 75805640 L1PA5 6144 - 190 287 167740 97 chain 16095 chr9 141213431 + 75805640 75805829 L1PA5 6144 + 5955 6144 138074 189 chain 4568 chr9 141213431 + 75832608 75832659 MLT1C 463 + 33 84 200021 51 chain 24075 chr9 141213431 + 75840861 75841169 AluY 311 + 4 310 109896 128 0 1 128 12 9 40 chain 19807 chr9 141213431 + 75841169 75841408 L1PA13 3608 + 1545 1797 127792 107 0 13 132 chain 6298 chr9 141213431 + 75877360 75877579 MER20 218 + 0 214 182812 17 55 45 15 11 14 51 41 43 29 chain 22611 chr9 141213431 + 75913075 75913411 THE1B 368 - 0 366 117535 57 0 6 62 35 45 30 1 0 109 0 15 42 chain 24174 chr9 141213431 + 75915501 75915859 THE1B 368 - 0 368 109353 166 1 0 4 0 1 17 5 4 42 3 0 62 22 36 36 chain 21765 chr9 141213431 + 75917906 75918191 AluSp 311 + 10 289 121154 115 12 6 158 chain 2567 chr9 141213431 + 75921387 75921431 MADE1 96 + 34 94 232244 14 2 18 28 chain 97264 chr9 141213431 + 75925304 75926504 L1P2 5180 + 1494 3849 37492 712 0 2 35 1 1154 452 chain 41846 chr9 141213431 + 75926504 75926990 L1PA7 6471 + 5968 6454 66836 486 chain 122182 chr9 141213431 + 75928147 75929737 THE1B-int 1605 - 5 1605 30318 75 12 0 7 7 0 485 1 0 4 0 1 18 0 1 91 0 1 235 1 0 118 0 1 107 1 26 234 0 1 108 6 7 80 chain 23137 chr9 141213431 + 75935780 75936058 L1PA5 6144 - 0 278 114954 278 chain 30344 chr9 141213431 + 75936119 75936437 AluYb8 318 - 0 318 83794 318 chain 4103 chr9 141213431 + 75942561 75942609 MLT1A0 366 - 65 114 205905 4 0 1 44 chain 25920 chr9 141213431 + 75950771 75951058 L1PA5 6144 - 14 301 100335 287 chain 51805 chr9 141213431 + 75951801 75952562 L1PA8 5853 + 5137 5841 57750 426 18 0 14 58 24 7 2 0 71 1 0 9 1 0 51 3 2 19 1 0 22 5 6 53 chain 52061 chr9 141213431 + 75953944 75954545 L1PA5 6144 + 5551 6143 57586 438 7 0 146 2 0 8 chain 6008 chr9 141213431 + 75979063 75979129 MER41B 635 - 88 154 185169 66 chain 29091 chr9 141213431 + 76001166 76001476 AluYa5 310 - 1 310 88589 183 1 0 126 chain 3186 chr9 141213431 + 76023366 76023404 MER53 195 + 38 76 221197 38 chain 3563 chr9 141213431 + 76045221 76045262 5S 121 - 79 120 214262 41 chain 7091 chr9 141213431 + 76110010 76110128 MER85 139 + 10 139 176826 86 20 31 12 chain 31500 chr9 141213431 + 76119452 76119896 LOR1b 457 + 29 457 81646 38 0 1 53 7 6 20 1 0 208 15 0 102 chain 5080 chr9 141213431 + 76136601 76136963 L1MB7 1623 - 197 518 194290 4 1 0 6 1 0 28 268 229 54 chain 46115 chr9 141213431 + 76137707 76138241 L1PA7 6471 + 5931 6465 61931 534 chain 5363 chr9 141213431 + 76144037 76144202 Tigger3a 397 - 44 246 191410 16 24 28 23 0 39 11 48 42 43 chain 52452 chr9 141213431 + 76167134 76167713 L1PA3long 6157 - 8 587 57322 579 chain 178849 chr9 141213431 + 76177362 76179573 L1PA8A 6298 + 4062 6291 21089 565 1 0 51 0 1 146 2 0 64 6 12 131 0 1 69 0 1 385 0 3 241 1 2 445 2 1 95 0 9 7 chain 22584 chr9 141213431 + 76202131 76202405 L1PA8A 6298 + 5199 5484 117661 37 0 11 237 chain 17140 chr9 141213431 + 76202406 76202602 L1PA8A 6298 + 5484 5680 135205 196 chain 46779 chr9 141213431 + 76202614 76203201 L1PA8A 6298 + 5694 6281 61388 485 1 0 33 7 8 61 chain 106694 chr9 141213431 + 76278441 76279623 L1PA4 6152 + 4951 6146 35064 78 0 13 1104 chain 4460 chr9 141213431 + 76348880 76348944 MADE1 96 - 2 93 201235 35 1 29 6 1 0 21 chain 3029 chr9 141213431 + 76355249 76355281 MIR 256 - 121 153 224380 32 chain 6843 chr9 141213431 + 76365886 76365969 5S 121 - 1 84 178636 83 chain 8161 chr9 141213431 + 76376102 76376196 L1PA4 6152 + 6058 6152 170167 94 chain 13525 chr9 141213431 + 76379686 76379843 L1P2 5180 - 3297 3454 146263 157 chain 512336 chr9 141213431 + 76397660 76404102 L1PA7 6471 + 0 6470 5939 203 0 1 129 6 4 70 1 2 35 5 14 55 14 0 45 1 0 97 0 1 343 4 43 351 0 3 173 0 5 185 1 5 232 3 5 637 16 0 6 1 2 48 5 4 29 0 1 355 29 11 294 9 13 76 1 0 20 1 0 32 2 1 122 0 1 16 0 5 531 3 4 201 0 1 267 0 2 269 0 1 671 1 0 143 6 8 90 0 1 299 1 0 133 26 27 136 1 0 12 chain 34190 chr9 141213431 + 76410898 76411270 L1HS 6032 - 0 376 77365 311 0 4 61 chain 39324 chr9 141213431 + 76431681 76432173 LTR10D 510 - 0 506 70293 247 1 2 149 0 1 15 0 1 11 1 12 68 chain 225573 chr9 141213431 + 76448702 76451180 L1PA3long 6157 + 3671 6149 17553 2478 chain 95551 chr9 141213431 + 76466126 76467161 L1PA3long 6157 + 4789 5824 37945 1035 chain 30825 chr9 141213431 + 76467162 76467495 L1PA3long 6157 + 5824 6157 82823 333 chain 12402 chr9 141213431 + 76482306 76482446 L1PA7 6471 + 6326 6466 150628 140 chain 86969 chr9 141213431 + 76511538 76512674 L1PA7 6471 - 17 1150 40795 12 4 3 41 7 10 764 1 4 127 30 23 116 1 0 33 chain 36715 chr9 141213431 + 76512674 76513100 L1PA7 6471 + 4242 4667 73549 397 1 0 28 chain 54923 chr9 141213431 + 76513100 76513728 L1PA7 6471 + 4674 5320 55754 371 0 1 221 0 17 36 chain 24711 chr9 141213431 + 76525497 76525788 AluYk4 311 - 9 300 106381 291 chain 15500 chr9 141213431 + 76567216 76567480 L1PA15-16 3068 + 203 456 139897 16 27 19 10 3 1 23 1 0 80 2 0 67 1 3 34 chain 11316 chr9 141213431 + 76567859 76567979 L1PA2 6032 + 5912 6032 155010 120 chain 29149 chr9 141213431 + 76589622 76589935 AluYb8 318 + 0 309 88319 11 4 0 298 chain 155527 chr9 141213431 + 76619297 76621127 L1PA5 6144 - 12 1824 23921 549 0 1 238 0 1 213 0 2 32 21 0 444 2 1 331 chain 62147 chr9 141213431 + 76621127 76621815 L1PA5 6144 + 3636 4324 51833 688 chain 31761 chr9 141213431 + 76659321 76659745 MER4A1 472 - 0 447 81230 64 6 8 137 12 32 137 0 1 68 chain 16400 chr9 141213431 + 76668522 76668735 AluSp 311 + 84 294 137208 26 3 4 166 5 1 13 chain 81235 chr9 141213431 + 76676459 76677417 L1PA6 6164 - 4 959 43070 6 3 0 949 chain 40252 chr9 141213431 + 76700498 76700948 LTR7 482 + 0 482 68941 263 1 32 46 0 1 140 chain 291239 chr9 141213431 + 76700950 76704615 HERVH-int 3825 + 0 3825 13944 172 0 3 37 0 11 266 2 0 43 5 0 38 1 0 10 65 0 25 0 13 13 3 0 24 42 0 36 1 21 17 3 2 48 1 0 291 0 3 150 15 0 218 0 1 239 8 35 284 0 4 427 0 1 370 0 35 10 35 0 223 9 11 39 8 218 487 chain 2583 chr9 141213431 + 76701524 76701552 HERVH-int 3825 + 461 489 196387 28 chain 2178 chr9 141213431 + 76701552 76701577 HERVH-int 3825 + 545 570 218762 25 chain 2428 chr9 141213431 + 76701654 76701684 HERVH-int 3825 + 696 725 188436 1 1 0 28 chain 40016 chr9 141213431 + 76705876 76706352 LTR7 482 + 0 482 69300 264 0 31 98 25 0 89 chain 212631 chr9 141213431 + 76716865 76719757 L1PA11 4918 + 1613 4504 18315 105 1 0 92 0 4 386 9 8 79 0 3 60 4 5 179 42 35 123 0 1 385 0 1 123 1 2 26 7 6 443 6 7 60 6 13 169 3 2 278 0 3 119 1 0 4 4 0 59 2 1 12 3 0 68 2 0 15 1 0 15 chain 169935 chr9 141213431 + 76755857 76757829 L1PA4 6152 + 4211 6143 22055 504 49 6 5 0 1 1311 0 1 79 1 2 23 chain 242518 chr9 141213431 + 76781095 76784037 L1P2 5180 + 2225 5174 16638 101 0 1 58 0 1 179 4 0 163 8 11 1023 0 1 200 0 2 177 0 1 182 0 1 570 0 1 82 1 0 4 0 1 4 5 6 49 0 1 45 1 0 47 7 6 32 chain 4171 chr9 141213431 + 76796140 76796219 L1MB8 1703 + 605 682 204961 15 15 13 49 chain 60597 chr9 141213431 + 76809556 76810405 LTR12 884 - 15 884 52523 141 0 103 162 1 0 85 2 0 32 81 0 143 0 2 64 0 2 77 2 0 33 1 0 25 chain 3089 chr9 141213431 + 76810019 76810060 LTR12 884 - 563 604 124118 41 chain 153964 chr9 141213431 + 76811726 76813550 SVA_D 2077 + 0 2056 24092 568 0 40 226 40 0 78 2 0 32 26 177 114 0 78 75 0 1 53 0 1 99 1 0 31 0 4 479 chain 20432 chr9 141213431 + 76820702 76820989 L1PA8 5853 - 0 284 125805 93 1 0 19 2 1 41 1 2 15 6 5 39 0 1 29 3 1 38 chain 13178 chr9 141213431 + 76832229 76832417 LTR1 825 + 0 191 147554 68 0 12 34 9 1 68 1 0 8 chain 267793 chr9 141213431 + 76836927 76840371 L1PA6 6164 + 2877 6162 15305 66 4 3 228 6 0 22 0 1 732 10 11 310 7 8 107 0 4 53 0 1 68 0 1 4 5 4 748 0 1 226 14 10 41 163 4 27 0 1 494 0 1 109 chain 76334 chr9 141213431 + 76843781 76845020 L1PB1 5432 + 3562 5422 45299 55 0 7 16 0 1 11 7 5 75 1 0 64 0 1 178 12 13 27 8 7 4 0 1 188 0 1 225 34 673 24 8 6 12 9 5 7 2 0 52 2 1 16 4 3 29 0 1 9 2 1 16 1 0 4 15 9 17 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 8 1 0 10 chain 18638 chr9 141213431 + 76862310 76862550 L1PA13 3608 + 2294 2533 131112 163 3 2 74 chain 95518 chr9 141213431 + 76872856 76873897 L1PA3long 6157 - 1322 2363 37953 1041 chain 122412 chr9 141213431 + 76873897 76875229 L1PA3long 6157 + 4825 6157 30246 1332 chain 6303 chr9 141213431 + 76877242 76877316 Tigger3b 1229 - 1127 1201 182773 74 chain 10115 chr9 141213431 + 76890422 76890763 LTR12C 1709 - 672 934 160013 20 68 31 31 0 37 21 113 35 25 1 0 62 chain 3932 chr9 141213431 + 76890442 76890486 LTR12C 1709 - 1011 1055 187936 44 chain 25146 chr9 141213431 + 76895149 76895447 AluY 311 + 0 294 104018 63 4 0 231 chain 19684 chr9 141213431 + 76960844 76961195 L1PB1 5432 - 10 329 128146 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 1 0 10 11 0 18 2 1 43 1 0 15 2 1 50 18 12 12 10 8 24 1 0 11 chain 24366 chr9 141213431 + 76965815 76966100 AluSp 311 - 26 311 108282 285 chain 10044 chr9 141213431 + 77021228 77021343 MER9a1 513 + 0 115 160357 115 chain 558778 chr9 141213431 + 77039190 77045220 L1PA2 6032 + 3 6032 427 915 1 0 5114 chain 6945 chr9 141213431 + 77055905 77056086 MER53 195 - 9 195 177858 18 84 89 79 chain 6727 chr9 141213431 + 77078764 77078887 Tigger7 736 + 76 246 179501 72 32 79 19 chain 11730 chr9 141213431 + 77081271 77081418 L1PA5 6144 + 5998 6141 153346 6 5 0 121 0 1 15 chain 17493 chr9 141213431 + 77145651 77145852 L1PA5 6144 - 10 211 134281 201 chain 98504 chr9 141213431 + 77234652 77235769 L1P1 4361 - 412 1525 37160 273 1 0 479 1 0 20 1 0 18 1 0 323 chain 2859 chr9 141213431 + 77278531 77278583 MLT1G1 539 - 84 134 227684 19 10 8 23 chain 14995 chr9 141213431 + 77297183 77297351 L1PA4 6152 + 5975 6143 141333 168 chain 14870 chr9 141213431 + 77311055 77311231 L1PA6 6164 + 5986 6162 141714 176 chain 22612 chr9 141213431 + 77318666 77318977 L1P5 443 - 92 401 117520 49 6 7 230 3 0 23 chain 20849 chr9 141213431 + 77319141 77319918 L1PB1 5432 + 4994 5423 124465 67 12 13 29 3 2 10 319 0 12 49 41 52 2 1 16 1 0 45 1 0 14 26 16 14 9 6 14 2 0 24 1 0 21 1 0 13 1 0 19 chain 23011 chr9 141213431 + 77340379 77340750 THE1B 368 + 0 368 115570 27 1 0 41 55 55 49 4 3 159 2 1 33 chain 7715 chr9 141213431 + 77387778 77387877 LTR9B 643 + 446 559 172830 67 2 16 30 chain 11334 chr9 141213431 + 77412269 77412417 MER2 342 - 47 195 154943 148 chain 18410 chr9 141213431 + 77414810 77415057 7SK 245 + 0 239 131746 131 24 16 92 chain 5242 chr9 141213431 + 77432567 77432650 MER51A 677 + 513 597 192602 11 11 12 61 chain 74968 chr9 141213431 + 77449397 77450290 L1PA6 6164 - 15 938 46025 89 5 10 163 0 21 35 0 1 323 0 3 278 chain 7333 chr9 141213431 + 77452173 77452290 MER5A1 166 - 29 147 175205 63 15 16 39 chain 7688 chr9 141213431 + 77462430 77462514 HY4 93 + 9 93 172994 84 chain 122139 chr9 141213431 + 77467376 77468780 SVA_B 1603 + 0 1593 30333 22 11 1 21 1 0 35 0 1 439 0 40 332 0 160 92 1 0 450 chain 5648 chr9 141213431 + 77472608 77472677 U6 107 + 16 87 188577 7 0 2 62 chain 22590 chr9 141213431 + 77473028 77473316 AluSc8 310 + 6 297 117633 120 1 5 130 6 5 31 chain 29340 chr9 141213431 + 77509826 77510271 L1M1 2793 + 2214 2695 87339 84 2 24 116 18 17 54 6 24 96 1 0 44 1 0 12 1 0 10 chain 4540 chr9 141213431 + 77515572 77515661 L1PB1 5432 - 41 124 200331 21 1 0 23 3 1 13 11 8 17 chain 24030 chr9 141213431 + 77524020 77524342 AluYb8 318 + 8 318 110164 35 48 36 239 chain 4624 chr9 141213431 + 77535592 77535646 SVA_F 1814 + 1756 1812 199366 46 0 2 8 chain 23821 chr9 141213431 + 77548162 77548457 AluSc 308 + 9 303 111355 255 0 2 31 3 0 6 chain 29473 chr9 141213431 + 77548788 77549230 L1PA16 3655 + 3090 3537 86740 9 1 0 101 0 4 11 50 52 24 2 0 216 0 2 28 chain 5725 chr9 141213431 + 77557704 77557774 MLT1E3 631 - 432 502 187887 70 chain 4334 chr9 141213431 + 77574910 77574996 Tigger1 2417 - 29 115 202792 12 1 18 12 17 0 44 chain 112166 chr9 141213431 + 77583371 77585003 L1PB2 3958 + 2210 3838 33621 271 3 0 98 0 4 134 0 2 19 1 0 5 12 13 51 12 13 104 7 6 192 5 10 32 3 4 95 0 4 6 4 13 21 2 0 42 26 12 13 8 0 56 0 2 20 3 0 53 0 2 38 1 0 72 1 0 37 0 9 17 1 0 73 6 0 22 1 0 13 1 0 15 4 3 32 chain 51748 chr9 141213431 + 77587417 77588037 L1P1 4361 - 1090 1728 57789 15 0 2 78 1 0 25 0 6 10 0 7 179 0 4 312 chain 15541 chr9 141213431 + 77622992 77623213 MER30 238 - 0 238 139763 39 0 3 30 1 0 6 4 10 40 2 11 99 chain 35177 chr9 141213431 + 77652440 77652912 MER1A 529 + 41 514 75943 15 6 8 4 0 1 386 12 10 49 chain 28913 chr9 141213431 + 77664789 77665174 MER83 447 + 0 402 89401 150 7 17 55 12 19 161 chain 44959 chr9 141213431 + 77670973 77671486 MER9a2 513 + 0 513 63108 513 chain 204373 chr9 141213431 + 77673135 77675481 L1PA6 6164 + 3811 6162 18898 382 0 1 4 1 0 159 0 4 557 0 1 1084 0 1 148 1 0 10 chain 4113 chr9 141213431 + 77680600 77680649 MLT1K 546 + 139 188 205737 49 chain 3982 chr9 141213431 + 77695238 77695284 MSTB 430 + 7 53 207653 46 chain 11994 chr9 141213431 + 77725190 77725399 L1MC1 2226 - 180 378 152224 54 2 0 9 10 7 19 0 2 41 1 0 22 11 5 33 1 0 6 chain 13458 chr9 141213431 + 77733500 77733835 THE1B 368 - 0 368 146495 49 30 56 21 85 91 27 17 18 106 chain 4056 chr9 141213431 + 77734904 77734979 MLT1B 390 - 244 321 206535 40 17 19 18 chain 9065 chr9 141213431 + 77753346 77753562 MER33 330 + 11 235 165237 21 34 36 52 44 50 65 chain 6158 chr9 141213431 + 77771403 77771480 MSTC 436 + 347 424 183913 77 chain 30573 chr9 141213431 + 77778734 77779239 LTR14B 630 + 17 630 83257 144 2 0 30 1 43 28 0 11 15 4 29 12 73 101 20 0 3 50 0 1 126 chain 18184 chr9 141213431 + 77784538 77784862 LTR23 429 + 0 297 132374 63 43 41 38 26 0 73 0 2 63 1 0 17 chain 4159 chr9 141213431 + 77787098 77787231 MER5C 305 + 191 305 205115 5 1 0 41 62 44 24 chain 13087 chr9 141213431 + 77792120 77792516 MLT1B 390 - 8 383 147894 88 163 149 35 22 23 65 2 0 3 6 0 12 chain 40938 chr9 141213431 + 77793060 77793569 LTR10D 510 - 0 510 67987 246 0 2 26 7 6 135 2 1 18 2 3 73 chain 7678 chr9 141213431 + 77796437 77796528 HY3 101 - 1 92 173057 91 chain 38195 chr9 141213431 + 77802775 77803299 MER41A 554 - 20 554 71841 60 0 5 31 6 7 134 5 8 156 18 19 114 chain 22717 chr9 141213431 + 77807898 77808261 THE1C 375 + 0 375 117002 113 1 2 58 65 76 126 chain 25549 chr9 141213431 + 77810007 77810304 AluY 311 + 6 304 101992 126 1 2 170 chain 543141 chr9 141213431 + 77817548 77823570 L1PA3long 6157 - 1 6157 2320 897 4 0 612 0 5 2501 0 1 1236 0 128 254 0 3 365 0 1 153 chain 107142 chr9 141213431 + 77827148 77828538 L1PA8 5853 - 0 1387 34935 90 6 5 17 2 1 45 8 7 9 2 1 68 2 0 46 1 0 43 1 0 380 0 3 51 1 0 78 0 2 9 7 11 235 0 1 24 1 2 213 37 32 14 chain 3250 chr9 141213431 + 77832304 77832377 L1PB1 5432 + 5350 5420 220000 16 6 5 19 5 4 10 1 0 16 chain 142197 chr9 141213431 + 77839260 77841262 L1PB1 5432 - 18 1969 25783 10 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 2 3 9 13 0 16 1 0 16 0 1 27 6 5 10 2 1 53 2 0 8 5 1 12 1 0 8 1 0 24 13 13 49 1 0 5 0 1 44 7 7 281 0 1 92 3 0 11 1 5 151 0 3 11 0 1 41 0 1 131 0 2 52 45 16 229 6 5 31 1 0 199 3 4 265 chain 25037 chr9 141213431 + 77859443 77859877 L1PA15 4387 - 31 443 104610 26 6 0 9 10 5 46 17 14 39 1 0 9 8 4 19 1 0 52 9 8 20 6 5 156 chain 441638 chr9 141213431 + 77868623 77874733 L1PA7 6471 - 1 6462 9008 150 6 0 6 9 17 158 3 4 44 1 0 72 10 5 165 1 0 4 1 2 35 0 12 40 4 7 134 0 1 8 0 4 617 1 0 48 0 1 371 1 2 545 0 1 6 1 2 9 3 0 258 2 0 165 0 1 73 4 0 79 0 1 180 4 0 6 1 5 144 12 10 445 0 1 111 0 2 482 0 1 534 11 20 120 0 1 4 7 7 4 1 0 75 0 25 37 1 0 100 14 8 18 0 1 15 1 22 90 106 182 36 30 39 31 0 19 81 54 251 128 66 52 127 chain 86343 chr9 141213431 + 77887661 77888722 MER11B 1079 - 0 1079 41024 11 5 4 30 1 0 4 0 1 156 0 1 98 2 4 412 1 0 25 0 17 316 chain 23214 chr9 141213431 + 77906878 77907234 THE1B 368 - 0 368 114623 75 1 0 5 1 3 10 0 1 73 5 1 22 15 14 94 11 26 44 chain 115534 chr9 141213431 + 77907242 77908776 THE1B-int 1605 - 8 1578 32598 105 1 6 487 1 0 4 3 4 388 4 5 117 24 49 65 0 1 4 2 1 23 0 2 213 7 10 86 chain 25294 chr9 141213431 + 77908801 77909154 THE1B 368 - 0 366 103255 75 1 0 115 10 9 87 23 38 42 chain 33588 chr9 141213431 + 77909434 77910023 L1MA1 4479 - 293 874 78258 14 17 11 10 1 0 9 1 0 35 2 0 29 1 0 53 1 0 55 3 0 15 12 8 69 16 20 13 2 0 6 0 1 10 1 0 38 1 2 35 1 0 14 2 0 25 1 0 27 23 35 47 chain 12399 chr9 141213431 + 77917718 77917902 L1PA16 3655 - 2487 2674 150642 54 1 0 33 12 16 84 chain 317865 chr9 141213431 + 77918562 77923055 L1PA11 4918 - 401 4910 12681 13 1 0 15 1 0 12 2 0 69 3 1 13 7 6 38 14 19 214 7 2 81 0 1 131 2 1 212 0 1 17 4 8 121 0 1 31 2 1 73 19 19 85 2 1 192 0 1 13 0 2 26 0 1 5 1 0 29 0 3 86 0 1 164 1 0 4 0 1 204 1 4 160 4 5 38 3 5 146 1 0 24 29 16 11 0 8 134 0 10 86 12 24 114 1 8 6 19 0 43 10 29 23 0 3 72 0 2 5 1 0 4 0 1 62 35 6 89 0 3 43 1 0 26 0 2 34 2 0 151 1 2 13 3 5 105 0 6 81 3 0 5 0 3 96 0 3 133 1 0 33 1 4 367 0 1 126 2 1 5 2 0 33 1 0 101 7 4 28 9 7 25 1 0 7 chain 19820 chr9 141213431 + 77926316 77926553 L1PA5 6144 - 0 230 127750 188 7 0 42 chain 76610 chr9 141213431 + 77927793 77928856 MER11C 1089 - 0 1089 45156 24 11 10 11 0 1 48 1 0 5 0 1 139 1 3 248 64 65 91 31 33 31 0 1 47 0 17 52 0 3 259 chain 22160 chr9 141213431 + 77928978 77929257 AluSp 311 - 15 291 119546 82 11 8 186 chain 402452 chr9 141213431 + 77936619 77941895 L1PA8 5853 - 0 5803 10014 93 1 0 18 1 0 49 7 5 7 1 0 49 0 1 22 2 0 47 1 0 263 0 1 18 1 0 227 0 2 42 0 2 19 0 4 116 0 1 134 0 1 42 4 2 473 1 0 169 0 3 63 1 0 99 0 1 307 0 18 148 0 1 6 0 8 84 0 3 156 0 3 25 18 22 20 11 0 111 0 5 30 40 30 15 3 0 17 3 2 319 3 4 73 3 4 8 1 0 374 0 1 4 1 0 44 15 14 11 0 1 22 11 7 144 0 3 34 0 1 244 0 5 87 2 1 255 12 13 58 1 0 187 0 552 71 3 5 21 12 0 178 1 0 16 49 13 13 2 1 9 2 0 22 chain 10260 chr9 141213431 + 77949080 77949380 L1MA5A 2387 + 2043 2306 159322 26 1 0 8 58 57 24 3 1 9 0 2 11 2 0 26 54 23 45 2 1 19 1 0 11 chain 164668 chr9 141213431 + 77952321 77954857 L1PB1 5432 - 8 2333 22710 4 1 0 16 1 0 13 1 0 21 1 0 24 28 23 11 22 11 15 7 11 38 1 0 15 3 2 49 31 24 13 1 0 20 1 0 4 209 7 51 1 0 4 1 2 131 14 16 150 0 6 122 7 4 123 9 14 89 0 1 35 0 1 148 0 2 375 0 4 98 1 3 103 4 3 412 1 0 107 chain 531673 chr9 141213431 + 77955485 77961641 L1PA4 6152 - 6 6151 4000 261 0 1 1391 1 0 138 0 4 1491 10 0 93 9 7 558 0 2 766 1 0 30 0 9 151 1 0 273 0 1 130 27 10 94 0 1 159 1 0 192 18 23 41 6 5 314 chain 290750 chr9 141213431 + 77961739 77965775 L1PBa1 4058 - 18 4048 13974 42 1 0 15 1 0 11 1 0 5 1 0 4 0 2 7 2 1 12 1 0 19 13 8 20 2 0 5 1 0 4 11 5 7 1 0 22 6 5 19 0 1 83 2 0 42 1 0 17 22 24 109 1 0 41 0 4 71 1 0 210 0 1 504 0 4 51 1 5 81 11 13 99 5 0 12 7 0 155 0 4 107 21 20 191 0 1 83 0 3 78 0 2 149 1 0 4 1 0 114 22 21 69 1 0 20 16 12 128 4 5 189 2 0 431 34 57 55 0 1 5 0 7 112 3 1 219 17 5 150 13 10 11 1 0 26 chain 276621 chr9 141213431 + 77968398 77972077 HERVH-int 3825 - 0 3825 14834 273 11 19 166 37 247 1019 24 29 1169 0 1 122 60 0 58 21 0 9 0 112 21 4 3 7 1 0 36 1 0 49 10 12 14 68 9 30 54 3 37 15 16 30 2 1 51 0 2 280 chain 3139 chr9 141213431 + 77971510 77971545 HERVH-int 3825 - 3305 3340 200984 35 chain 75445 chr9 141213431 + 77977006 77978099 MER11A 1151 - 0 1151 45796 163 6 7 40 1 0 20 0 1 37 18 0 21 42 0 15 0 26 131 5 6 116 1 0 29 0 1 94 0 1 114 0 2 33 4 0 64 1 0 53 8 0 23 0 99 28 5 6 21 chain 31811 chr9 141213431 + 77978561 77978963 L1PA7 6471 - 6 409 81147 156 5 6 241 chain 28516 chr9 141213431 + 77990807 77991109 AluYa5 310 - 8 310 91114 302 chain 6852 chr9 141213431 + 78008323 78008510 MER5A1 166 - 4 166 178564 64 77 58 6 6 0 34 chain 29398 chr9 141213431 + 78014156 78014680 MSTA-int 1630 - 11 1630 87090 102 5 12 30 4 5 24 12 10 34 61 1153 18 13 14 99 5 0 101 0 1 16 chain 8287 chr9 141213431 + 78057908 78058012 LTR1 825 - 315 433 169473 44 0 1 42 0 13 18 chain 44382 chr9 141213431 + 78074460 78074975 L1PA6 6164 + 5630 6145 63713 515 chain 21816 chr9 141213431 + 78091097 78091353 AluY 311 + 38 296 120958 88 1 3 167 chain 28754 chr9 141213431 + 78136719 78137030 AluYa5 310 - 0 310 90096 217 1 0 93 chain 122289 chr9 141213431 + 78138901 78140476 THE1A-int 1579 + 0 1574 30281 56 2 6 41 3 2 20 0 1 139 9 0 385 0 1 4 8 10 373 0 1 535 chain 26635 chr9 141213431 + 78140481 78140835 THE1A 353 + 0 353 97530 10 0 1 4 1 0 32 0 1 42 5 4 166 1 0 93 chain 21209 chr9 141213431 + 78165638 78166001 MSTA 426 + 14 405 123180 89 0 1 5 0 4 14 26 33 30 18 16 21 15 13 56 1 21 88 chain 69307 chr9 141213431 + 78168519 78169315 L1PA4 6152 + 5359 6152 48679 342 12 8 256 0 1 186 chain 25552 chr9 141213431 + 78171269 78171642 THE1C 375 + 0 375 101973 125 3 0 17 7 11 31 1 2 21 5 6 137 1 0 25 chain 92566 chr9 141213431 + 78177668 78178730 L1PA5 6144 - 3 1065 38796 684 0 1 162 1 0 215 chain 31264 chr9 141213431 + 78181694 78182141 LTR22A 463 - 6 463 82058 21 0 4 75 16 20 82 1 0 13 0 1 6 13 14 126 0 1 94 chain 3537 chr9 141213431 + 78211627 78211696 MER53 195 + 93 167 214755 13 18 23 38 chain 36828 chr9 141213431 + 78234307 78234741 THE1A-int 1579 + 1144 1579 73768 299 0 1 135 chain 28004 chr9 141213431 + 78234741 78235092 THE1A 353 + 0 353 92986 108 1 0 73 0 3 169 chain 288555 chr9 141213431 + 78244364 78247556 L1PA4 6152 + 2935 6136 14120 278 0 1 131 0 1 1958 0 4 657 0 3 168 chain 3358 chr9 141213431 + 78265392 78265430 MLT1A1 405 + 298 336 217906 38 chain 7937 chr9 141213431 + 78274705 78274845 MSTB 430 + 261 407 171404 54 13 17 21 13 15 39 chain 19659 chr9 141213431 + 78285834 78286072 L1PA6 6164 + 5924 6162 128221 78 1 4 6 3 0 150 chain 36591 chr9 141213431 + 78299428 78299835 L1PA3long 6157 - 0 411 74110 5 1 0 112 0 5 289 chain 23529 chr9 141213431 + 78299836 78300088 L1PA3long 6157 + 5495 5747 112969 252 chain 549503 chr9 141213431 + 78316026 78322163 L1PA3long 6157 - 9 6153 1516 796 0 1 51 1 0 12 0 4 68 0 1 510 0 1 69 5 3 336 0 1 3450 7 8 101 1 0 382 0 2 348 chain 6029 chr9 141213431 + 78338665 78338744 MADE1 96 - 0 96 184980 43 0 17 36 chain 8576 chr9 141213431 + 78346802 78346898 L1PA5 6144 - 5 101 167870 96 chain 13274 chr9 141213431 + 78346898 78347053 L1PA6 6164 + 5715 5872 147196 90 0 1 25 0 1 40 chain 23067 chr9 141213431 + 78352501 78352836 THE1C 375 - 40 375 115319 129 12 9 15 0 3 33 4 0 7 26 30 109 chain 210812 chr9 141213431 + 78359644 78362035 L1PA5 6144 + 3719 6135 18444 479 1 0 433 0 5 275 1 2 977 0 1 155 3 22 67 chain 82778 chr9 141213431 + 78362442 78363469 THE1A-int 1579 + 539 1567 42427 287 5 6 334 0 1 174 2 1 225 chain 329936 chr9 141213431 + 78374149 78378080 L1PA5 6144 - 5 6144 12205 108 1 0 33 1 2 191 1 0 1217 0 1 243 0 8 833 9 10 108 0 3 92 0 1 130 0 1 230 37 2231 166 4 0 7 1 5 519 chain 511281 chr9 141213431 + 78380887 78387253 L1PA7 6471 - 8 6468 6042 118 2 1 205 0 2 400 0 12 108 0 3 4 0 1 261 1 0 277 1 2 107 7 10 5 3 0 228 0 1 821 5 13 55 0 1 608 5 4 159 0 1 414 3 4 506 0 2 178 0 3 125 9 7 60 2 3 197 6 7 200 2 1 759 1 2 23 9 73 80 0 1 230 1 2 58 12 7 111 chain 35186 chr9 141213431 + 78399915 78400374 L1PA8 5853 - 6 485 75935 87 1 0 19 2 1 8 0 27 15 1 0 11 1 0 65 6 4 46 1 0 196 chain 32027 chr9 141213431 + 78406539 78406981 MLT2A1 477 + 0 477 80825 17 0 4 148 4 1 9 0 1 24 0 1 180 6 0 8 9 47 37 chain 487344 chr9 141213431 + 78431085 78437131 L1PA7 6471 - 3 6471 7465 7 7 0 135 5 6 447 0 165 90 1 0 127 0 251 302 0 1 306 0 1 57 1 2 70 0 4 260 0 1 398 1 3 338 6 5 153 0 9 86 0 4 545 0 1 53 13 0 239 1 2 277 0 1 170 0 3 734 1 5 57 0 1 409 0 4 275 1 0 6 0 1 45 19 0 23 0 11 63 3 0 315 chain 3535 chr9 141213431 + 78449451 78449490 MER58D 378 - 8 47 214796 39 chain 21036 chr9 141213431 + 78465813 78466111 THE1B 368 + 0 307 123782 14 2 0 33 0 6 116 2 0 6 0 1 4 0 1 17 0 3 6 3 7 18 1 0 8 1 0 67 chain 50319 chr9 141213431 + 78466742 78467351 LTR71B 605 + 0 605 58773 152 5 0 355 1 2 96 chain 41104 chr9 141213431 + 78516046 78516546 L1PA8 5853 + 5353 5847 67765 211 1 0 46 2 0 71 1 0 59 2 1 19 1 0 87 chain 11429 chr9 141213431 + 78545078 78545235 THE1B 368 - 210 368 154567 41 9 10 107 chain 24592 chr9 141213431 + 78559745 78560031 AluSp 311 + 2 288 107030 286 chain 56302 chr9 141213431 + 78563084 78563774 L1PA6 6164 - 5 695 54962 81 6 7 52 4 3 90 6 8 84 2 0 365 chain 38084 chr9 141213431 + 78565383 78565806 L1P1 4361 + 1758 2181 72010 423 chain 6503 chr9 141213431 + 78566690 78566772 MER2 342 + 133 215 181211 82 chain 23789 chr9 141213431 + 78582682 78582977 AluSp 311 - 17 311 111535 88 2 1 205 chain 37454 chr9 141213431 + 78587228 78587695 L1PA10 4194 - 33 499 72886 11 2 1 33 3 0 269 0 2 59 0 1 90 chain 19023 chr9 141213431 + 78613982 78614197 L1PA7 6471 - 5 220 130055 215 chain 43459 chr9 141213431 + 78614204 78614705 MER9a1 513 - 13 513 64861 6 0 1 37 4 0 63 0 2 391 chain 8390 chr9 141213431 + 78623826 78623964 MER53 195 + 45 185 168904 49 19 21 70 chain 114759 chr9 141213431 + 78678247 78679768 SVA_F 1814 - 0 1267 32858 10 0 6 832 3 18 48 274 0 20 1 0 333 chain 10347 chr9 141213431 + 78679140 78679314 SVA_F 1814 - 674 848 92129 174 chain 6896 chr9 141213431 + 78679315 78679398 SVA_F 1814 - 624 707 178220 58 1 0 10 0 1 14 chain 19464 chr9 141213431 + 78712158 78712371 AluYb8 318 - 2 213 128774 190 2 0 21 chain 29398 chr9 141213431 + 78736730 78737038 AluYa5 310 - 2 310 87086 308 chain 23853 chr9 141213431 + 78845949 78846305 THE1C 375 - 11 367 111170 122 17 13 47 0 1 111 15 19 24 1 0 19 chain 63577 chr9 141213431 + 78861763 78862534 LTR17 781 - 9 781 51199 398 0 1 45 0 1 27 10 0 172 0 9 119 chain 3185 chr9 141213431 + 78864623 78864659 tRNA-Cys-TGY 72 + 1 37 221217 36 chain 45613 chr9 141213431 + 78876535 78877054 L1PA3long 6157 - 1613 2133 62388 224 6 7 289 chain 149856 chr9 141213431 + 78877054 78878704 L1PA3long 6157 + 4507 6157 24633 1650 chain 98861 chr9 141213431 + 78893838 78894905 L1PA2 6032 - 11 1078 37059 1067 chain 18886 chr9 141213431 + 78899136 78899433 THE1B 368 + 0 301 130403 169 1 0 5 18 20 6 0 5 4 1 0 4 0 1 10 7 6 12 2 1 58 chain 27062 chr9 141213431 + 78933062 78933397 L1PA7 6471 + 6140 6470 96073 222 9 5 99 1 0 4 chain 13568 chr9 141213431 + 78933905 78934096 MER4A1 472 - 0 193 146101 68 11 13 112 chain 83625 chr9 141213431 + 78934184 78935139 LTR13A 966 + 0 965 42063 145 0 12 786 3 0 8 0 1 13 chain 19716 chr9 141213431 + 78960936 78961218 L1P4 1494 - 324 609 128049 37 5 7 75 20 21 145 chain 37278 chr9 141213431 + 78977472 78977933 LTR2 463 + 0 463 73114 362 12 13 30 4 5 53 chain 5150 chr9 141213431 + 79030435 79030492 MER34C2 569 + 498 555 193549 57 chain 4146 chr9 141213431 + 79037394 79037443 MER47A 366 + 65 114 205302 49 chain 70217 chr9 141213431 + 79049255 79050294 MER11A 1151 + 6 1134 48305 64 0 3 6 21 31 33 0 93 53 8 5 31 35 0 63 0 1 54 0 1 89 0 1 3 0 1 21 1 0 27 17 28 27 1 2 196 13 20 226 16 15 34 chain 22675 chr9 141213431 + 79051772 79052033 L1PA5 6144 + 5882 6143 117186 261 chain 41769 chr9 141213431 + 79052081 79052634 MER41A 554 + 0 554 66946 94 0 1 32 7 6 297 6 7 117 chain 15136 chr9 141213431 + 79053617 79053829 MER30 238 - 0 238 140955 80 18 44 114 chain 46095 chr9 141213431 + 79058114 79058622 MER9a2 513 - 5 513 61948 508 chain 66167 chr9 141213431 + 79084146 79084906 LTR17 781 + 0 781 50019 327 1 0 388 0 22 44 chain 48809 chr9 141213431 + 79092794 79093477 LTR12_ 688 + 0 673 59872 105 1 0 4 1 2 31 24 0 226 4 16 256 7 9 24 chain 141439 chr9 141213431 + 79093793 79095392 L1PA5 6144 - 18 1620 25911 361 0 1 92 4 0 385 0 1 19 0 6 652 2 1 84 chain 25238 chr9 141213431 + 79097254 79097552 AluY 311 + 0 295 103546 18 1 0 115 2 0 162 chain 4287 chr9 141213431 + 79098932 79098984 Charlie1b 519 - 44 96 203394 52 chain 33961 chr9 141213431 + 79104214 79104658 LTR12_ 688 - 11 688 77675 15 0 236 140 1 0 53 1 0 208 1 0 25 chain 318337 chr9 141213431 + 79106223 79110061 HERV9-int 5642 - 818 5637 12654 872 7 942 288 0 1 168 1 16 591 0 1 135 7 5 586 11 12 410 2 1 80 6 0 82 10 46 158 3 7 89 4 1 328 chain 39936 chr9 141213431 + 79110083 79110625 LTR12_ 688 - 0 688 69416 46 0 2 80 25 136 358 0 34 8 1 0 24 chain 29526 chr9 141213431 + 79124520 79124828 AluYb8 318 - 10 318 86543 308 chain 3803 chr9 141213431 + 79133780 79133824 MADE1 96 + 52 96 210343 44 chain 7119 chr9 141213431 + 79134683 79134792 MER20 218 - 18 123 176625 42 5 0 16 4 5 42 chain 102661 chr9 141213431 + 79137834 79139169 LTR12C 1709 - 0 1709 36087 84 5 4 31 0 1 9 0 2 169 0 4 177 8 12 33 0 207 128 0 118 187 3 2 74 5 0 83 4 47 44 16 16 19 8 10 248 chain 43088 chr9 141213431 + 79139495 79140038 MLT2A2 560 - 0 560 65308 6 0 4 60 0 1 76 0 11 197 0 1 204 chain 4772 chr9 141213431 + 79142885 79143038 LTR12D 1347 - 356 420 197670 41 89 0 23 chain 480 chr9 141213431 + 79143180 79143213 LTR12D 1347 - 163 196 213487 33 chain 2930 chr9 141213431 + 79150446 79150483 MLT2D 439 + 391 432 226503 11 0 4 26 chain 2729 chr9 141213431 + 79163279 79163308 L1MD 993 - 520 549 229741 29 chain 10923 chr9 141213431 + 79196216 79196352 L1MB1 2102 - 515 652 156516 121 0 1 15 chain 4180 chr9 141213431 + 79200612 79200660 MLT1C-int 1263 - 1188 1237 204832 34 0 1 14 chain 10697 chr9 141213431 + 79208440 79208575 MER41A 554 - 0 140 157430 81 0 5 54 chain 2874 chr9 141213431 + 79233059 79233089 MER66C 541 - 124 154 227468 30 chain 4115 chr9 141213431 + 79236529 79236597 MER5A 189 + 0 69 205704 15 6 7 4 1 0 21 0 1 21 chain 12977 chr9 141213431 + 79246898 79247142 L1PA15 4387 - 60 292 148323 12 2 1 41 20 17 39 2 1 9 0 2 3 6 0 17 1 0 55 1 0 26 1 0 9 chain 80802 chr9 141213431 + 79280753 79281760 LTR13 1007 + 0 1007 43267 73 2 0 324 0 1 230 2 1 56 0 3 12 0 1 274 3 1 31 chain 550097 chr9 141213431 + 79284954 79290991 L1PA2 6032 + 1 6029 1437 256 1 0 641 1 0 695 0 1 2748 10 3 168 1 0 1361 0 11 7 18 7 130 chain 24719 chr9 141213431 + 79331626 79331929 L1PA8A 6298 - 7 309 106335 99 2 1 202 chain 19299 chr9 141213431 + 79335784 79336020 AluYc3 301 + 37 274 129246 76 1 2 159 chain 26409 chr9 141213431 + 79357810 79358183 THE1C 375 + 2 375 98377 85 5 4 44 0 4 40 0 2 5 0 1 6 12 6 39 1 0 5 0 1 131 chain 30427 chr9 141213431 + 79361339 79361657 AluYb9 318 + 0 318 83636 318 chain 20068 chr9 141213431 + 79368578 79368811 AluY 311 + 30 260 126925 90 3 0 140 chain 3102 chr9 141213431 + 79384092 79384125 U5 65 + 0 33 222877 33 chain 13334 chr9 141213431 + 79402303 79402470 L1PA8 5853 + 5688 5853 146959 56 1 0 16 1 0 93 chain 24757 chr9 141213431 + 79406996 79407351 THE1B 368 + 0 368 106130 148 0 8 13 1 0 11 0 1 9 17 24 17 1 0 11 2 1 125 chain 29940 chr9 141213431 + 79414969 79415308 L1PA5 6144 - 1 340 84999 339 chain 4391 chr9 141213431 + 79428427 79428479 MER63C 923 + 508 560 202078 52 chain 4888 chr9 141213431 + 79433800 79433857 MLT1C 463 + 33 90 196390 57 chain 189925 chr9 141213431 + 79455926 79458396 L1PA7 6471 + 0 6465 20058 131 18 10 378 0 1 82 0 19 287 46 4010 108 1 2 55 0 1 26 1 3 180 0 2 174 0 5 147 1 0 56 1 10 15 1 0 335 0 6 91 3 0 53 1 0 125 2 4 143 3 0 6 chain 35108 chr9 141213431 + 79473276 79473684 L1PA7 6471 + 6062 6470 76039 408 chain 20781 chr9 141213431 + 79535493 79535771 AluY 311 + 11 296 124674 42 12 20 60 8 7 156 chain 141449 chr9 141213431 + 79550643 79552198 L1PA4 6152 - 9 1567 25909 153 0 1 888 0 2 514 chain 27910 chr9 141213431 + 79556794 79557153 THE1C 375 - 0 375 93320 25 1 0 119 1 19 75 1 0 137 chain 5909 chr9 141213431 + 79569547 79569614 LTR7Y 441 + 374 441 186097 67 chain 130132 chr9 141213431 + 79569745 79571200 SVA_D 2077 + 0 2077 28060 542 0 40 105 0 40 29 0 9 85 0 309 171 0 224 523 chain 194562 chr9 141213431 + 79596443 79599434 L1PA10 4194 - 1103 4019 19619 122 16 39 12 3 0 6 0 3 162 0 1 71 0 4 47 0 1 352 17 14 19 8 12 128 1 2 275 6 5 138 14 16 233 1 2 154 16 0 4 57 0 72 0 1 306 0 10 161 9 0 8 0 9 11 1 11 146 0 1 43 10 8 18 19 19 18 10 9 8 0 1 6 1 0 8 4 0 10 3 0 5 1 0 9 38 29 4 0 1 24 51 29 13 3 1 19 53 44 7 3 0 12 2 0 13 chain 38840 chr9 141213431 + 79665919 79666385 L1PA7 6471 + 5997 6466 70964 302 3 5 17 1 2 143 chain 22795 chr9 141213431 + 79672783 79673073 AluSp 311 - 9 302 116601 41 11 14 238 chain 135070 chr9 141213431 + 79675073 79676561 SVA_D 2077 - 3 2068 27003 621 0 537 25 0 40 842 chain 3683 chr9 141213431 + 79677525 79677588 L1MC1 2226 - 1474 1532 212178 15 4 0 25 1 0 18 chain 6005 chr9 141213431 + 79679746 79679824 Tigger2b_Pri 1066 + 834 914 185204 48 0 2 30 chain 7759 chr9 141213431 + 79680867 79680965 Tigger2a 444 - 193 290 172551 93 1 0 4 chain 11012 chr9 141213431 + 79685603 79685775 LTR48 738 + 316 499 156159 25 0 2 77 3 9 34 7 11 19 1 0 6 chain 16376 chr9 141213431 + 79685781 79686003 THE1B 368 - 141 368 137271 9 0 4 13 0 3 26 1 0 4 1 0 168 chain 21240 chr9 141213431 + 79695737 79695985 AluSp 311 - 35 284 123053 11 0 1 237 chain 8755 chr9 141213431 + 79705431 79705546 L1PB1 5432 - 151 264 166890 45 1 0 15 2 1 52 chain 195420 chr9 141213431 + 79715942 79718984 L1PA13 3608 + 815 3548 19548 60 313 6 66 5 0 353 0 1 211 18 22 67 7 8 82 0 1 155 0 2 112 8 0 7 0 12 44 4 5 6 1 0 55 6 1 200 1 4 180 0 1 117 0 6 65 8 9 241 3 14 65 0 3 121 12 11 32 1 0 114 2 0 62 1 0 55 1 0 4 3 1 47 2 0 5 7 6 12 1 0 21 0 3 3 6 0 8 10 5 12 1 0 6 7 1 10 1 0 6 2 0 7 chain 7906 chr9 141213431 + 79721790 79721914 Tigger4b 360 - 229 360 171611 62 21 28 41 chain 19403 chr9 141213431 + 79744916 79745153 MSTA-int 1630 - 1391 1630 128939 141 0 1 81 0 1 15 chain 58757 chr9 141213431 + 79770800 79771472 L1PA6 6164 + 5486 6159 53551 67 0 1 605 chain 2816 chr9 141213431 + 79802561 79802596 L1MB3 1562 - 868 906 228505 29 0 3 6 chain 3295 chr9 141213431 + 79833471 79833512 MER5A 189 + 147 188 219080 41 chain 20780 chr9 141213431 + 79875861 79876114 AluSg7 307 - 56 307 124680 112 1 2 5 3 0 132 chain 475200 chr9 141213431 + 79877351 79883524 L1PA7 6471 - 1 6471 7877 668 313 2 178 9 8 396 48 0 129 1 0 358 1 0 473 0 1 559 2 1 115 1 6 74 1 0 87 6 0 21 0 1 57 1 0 58 0 4 34 1 5 253 1 0 167 1 0 14 0 635 800 0 1 23 1 0 548 0 1 137 0 1 4 9 8 38 0 6 103 0 12 37 6 7 31 5 6 214 1 0 189 chain 55660 chr9 141213431 + 79914278 79914997 L1PA8 5853 + 5132 5843 55332 432 1 0 45 5 0 73 1 0 6 0 1 40 15 14 17 1 0 83 chain 91441 chr9 141213431 + 79918338 79919368 LTR5A 1029 - 0 1029 39150 882 1 0 147 chain 84101 chr9 141213431 + 79950241 79951279 L1PA7 6471 + 5428 6470 41853 196 0 4 345 7 4 205 0 3 285 chain 9539 chr9 141213431 + 79956132 79956252 LTR17 781 + 205 326 162889 78 0 1 42 chain 5940 chr9 141213431 + 79957054 79957163 MER76 683 - 6 118 185779 39 26 29 44 chain 20726 chr9 141213431 + 79966538 79966802 AluSx4 309 + 34 294 124875 223 0 1 30 5 0 6 chain 68496 chr9 141213431 + 79986572 79987332 L1PA2 6032 - 0 766 48912 143 7 0 23 0 13 587 chain 135175 chr9 141213431 + 79987332 79988795 L1PA2 6032 + 3798 5261 26979 1463 chain 26890 chr9 141213431 + 79992119 79992404 AluYb9 318 - 3 288 96670 285 chain 33051 chr9 141213431 + 80013746 80014096 L1HS 6032 + 5682 6032 79135 350 chain 540474 chr9 141213431 + 80023221 80029655 L1PA4 6152 + 0 6141 2739 399 4 0 338 1 0 137 0 1 56 4 0 514 0 4 752 0 2 366 0 4 10 0 2 489 311 0 86 0 2 22 0 4 777 4 0 386 0 4 283 0 5 518 2 0 142 1 5 88 0 1 744 chain 25537 chr9 141213431 + 80026297 80026601 AluYf5 307 + 0 305 102072 205 5 6 94 chain 24363 chr9 141213431 + 80056051 80056427 THE1D 372 + 0 372 108304 39 16 7 142 24 23 27 8 14 120 chain 9797 chr9 141213431 + 80087947 80088086 L1MB7 1623 + 99 235 161607 43 1 0 31 2 0 62 chain 493412 chr9 141213431 + 80092960 80098616 L1PA4 6152 - 16 5632 7206 35 1 0 5 0 1 774 0 1 166 0 5 581 27 0 877 0 3 170 0 1 231 1 0 1415 9 3 87 4 5 569 6 9 5 3 0 84 0 1 252 17 0 280 1 0 56 chain 120005 chr9 141213431 + 80104417 80105862 LTR12C 1709 - 0 1709 31059 420 0 9 15 0 2 35 0 4 77 0 207 68 0 40 395 0 1 135 1 2 299 chain 3601 chr9 141213431 + 80124684 80124726 MADE1 96 - 54 96 213624 42 chain 32129 chr9 141213431 + 80138078 80138504 MSTA 426 - 0 426 80643 212 13 12 98 0 1 103 chain 3181 chr9 141213431 + 80141170 80141218 MLT1C-int 1263 + 1173 1222 221322 24 1 2 23 chain 28805 chr9 141213431 + 80145038 80145426 MSTA 426 + 15 408 89866 88 0 1 47 0 8 33 20 16 200 chain 21719 chr9 141213431 + 80150180 80150489 AluY 311 + 8 301 121317 43 6 0 81 0 1 81 16 11 40 1 2 14 7 0 20 chain 5886 chr9 141213431 + 80186349 80186452 MER33 330 + 8 118 186316 57 19 26 27 chain 14018 chr9 141213431 + 80186470 80186636 AluSp 311 + 36 202 144509 166 chain 4893 chr9 141213431 + 80188994 80189045 AluJr4 308 + 56 107 196348 51 chain 44458 chr9 141213431 + 80199520 80200071 MER41A 554 - 0 554 63628 336 6 8 116 1 2 92 chain 36778 chr9 141213431 + 80211572 80212039 MER4A1 472 + 0 472 73834 29 0 1 70 0 2 118 0 1 132 0 1 118 chain 7582 chr9 141213431 + 80220451 80220598 L1MA8 2339 + 1904 2044 173653 23 33 27 55 1 0 35 chain 29569 chr9 141213431 + 80233538 80233848 AluYa5 310 - 0 310 86329 310 chain 525118 chr9 141213431 + 80238390 80244802 L1PA7 6471 + 0 6467 4676 124 0 2 61 9 11 212 1 2 200 1 0 641 10 29 279 9 8 175 0 9 217 1 4 20 10 20 625 4 0 247 0 4 174 1 0 201 0 4 335 1 3 417 15 5 168 4 3 10 0 2 184 0 1 377 0 1 75 10 14 759 0 4 44 3 8 348 1 0 109 0 1 330 chain 24763 chr9 141213431 + 80265304 80265605 AluSp 311 + 11 303 106094 73 4 0 213 5 0 6 chain 29108 chr9 141213431 + 80297514 80297818 AluYa5 310 - 5 309 88514 304 chain 312775 chr9 141213431 + 80299695 80303306 L1PA4 6152 - 9 6152 12898 305 0 1 535 0 4 1336 0 4 719 0 2520 235 6 0 170 6 7 225 1 9 73 chain 119449 chr9 141213431 + 80305281 80307184 THE1B-int 1605 - 0 1592 31249 270 1 0 258 0 1 218 19 20 217 1 0 164 0 25 21 345 6 297 4 5 66 1 3 21 chain 133496 chr9 141213431 + 80317021 80318770 SVA_B 1603 - 0 1603 27321 621 3 0 4 34 0 28 1 2 83 1 0 13 1 0 420 115 0 237 0 1 153 20 26 15 chain 1863 chr9 141213431 + 80317649 80317683 SVA_B 1603 - 551 585 69415 34 chain 6190 chr9 141213431 + 80318230 80318343 SVA_B 1603 - 1055 1168 69415 113 chain 26796 chr9 141213431 + 80319835 80320147 L1PA7 6471 - 17 329 96993 312 chain 26744 chr9 141213431 + 80370446 80370757 HERVL-int 5654 + 5343 5654 97183 311 chain 172499 chr9 141213431 + 80375134 80378031 SVA_D 2077 + 21 2077 21762 15 0 25 827 40 0 15 1 0 8 3 1 32 755 10 76 1 0 6 77 2 54 0 1 104 49 0 164 0 49 351 1 0 308 2 0 8 chain 5047 chr9 141213431 + 80376075 80376211 SVA_D 2077 + 982 1059 68086 30 69 8 16 0 2 21 chain 2482 chr9 141213431 + 80376105 80376174 SVA_D 2077 + 1129 1198 75491 69 chain 25636 chr9 141213431 + 80376211 80376830 SVA_D 2077 + 959 1054 61907 33 0 1 28 528 0 11 0 3 19 chain 38656 chr9 141213431 + 80376296 80376759 SVA_F 1814 + 616 1291 71219 44 0 196 24 1 2 65 0 15 165 0 1 146 1 0 17 chain 3189 chr9 141213431 + 80376913 80376990 SVA_D 2077 + 1137 1214 61907 77 chain 2029 chr9 141213431 + 80377148 80377197 SVA_D 2077 + 1373 1422 61907 49 chain 7151 chr9 141213431 + 80397027 80397107 L1PA2 6032 + 5951 6031 176398 80 chain 56570 chr9 141213431 + 80415010 80415632 L1PA3long 6157 + 5518 6152 54812 479 0 12 143 chain 55445 chr9 141213431 + 80476278 80478543 THE1B-int 1605 - 15 1605 55443 88 1 7 154 0 1 104 1549 865 204 0 2 165 chain 25411 chr9 141213431 + 80478555 80478898 THE1B 368 - 13 368 102630 43 2 1 130 1 0 7 4 3 112 0 15 44 chain 21180 chr9 141213431 + 80520707 80521012 L1PA8 5853 + 5555 5853 123277 9 1 0 44 2 0 67 9 8 5 1 0 50 4 3 19 2 1 92 chain 22045 chr9 141213431 + 80529303 80529593 AluSp 311 + 11 297 120043 73 3 2 34 1 0 12 13 11 154 chain 10606 chr9 141213431 + 80552911 80553110 MER2 342 - 22 209 157800 18 52 40 129 chain 100739 chr9 141213431 + 80585471 80586699 L1P1 4361 + 2898 4136 36573 273 2 0 49 6 19 269 1 0 628 chain 10827 chr9 141213431 + 80586884 80587019 L1P1 4361 - 33 168 156881 23 1 0 106 0 1 5 chain 16292 chr9 141213431 + 80597675 80597873 L1PA5 6144 + 5947 6143 137499 108 2 0 88 chain 513728 chr9 141213431 + 80669162 80675281 L1PA6 6164 + 15 6161 5809 91 1 5 305 10 11 506 0 4 922 0 5 138 1 0 184 1 0 12 0 1 121 9 11 266 0 1 591 0 1 765 1 0 23 0 1 219 1 0 138 0 2 23 1 5 340 7 8 598 0 4 845 chain 24022 chr9 141213431 + 80678603 80678901 L1PA7 6471 - 3 307 110206 92 0 1 59 8 9 108 0 4 31 chain 59467 chr9 141213431 + 80681119 80682472 MSTA-int 1630 - 619 1614 53134 23 2 1 21 5 4 78 6 10 53 34 117 248 37 40 75 0 4 49 1 5 14 3 2 97 453 0 154 chain 32529 chr9 141213431 + 80681869 80682294 MER4A1 472 + 0 448 79979 227 0 21 148 4 6 46 chain 490193 chr9 141213431 + 80690411 80696038 L1PA4 6152 + 3 6152 7355 93 0 525 208 0 1 612 1 2 5 1 0 1179 0 10 571 1 0 1228 0 1 366 32 12 484 0 1 840 0 5 6 chain 270455 chr9 141213431 + 80698537 80701837 L1PA6 6164 + 13 3324 15168 496 2 1 232 3 4 160 0 4 25 0 10 141 0 3 87 4 5 157 1 4 65 9 3 320 0 2 593 7 0 255 1 0 609 0 1 115 0 1 18 chain 62043 chr9 141213431 + 80701837 80702560 L1PA6 6164 + 3969 4696 51790 247 0 1 94 0 1 40 0 1 62 0 1 280 chain 118708 chr9 141213431 + 80702560 80703958 L1PA6 6164 + 4726 6155 31528 776 0 29 28 0 1 443 15 14 50 0 2 86 chain 108212 chr9 141213431 + 80725471 80726676 L1PA3long 6157 - 0 1207 34643 587 0 1 261 7 8 350 chain 51456 chr9 141213431 + 80750653 80751255 L1PA4 6152 + 2581 3183 58001 202 0 2 373 1 0 7 1 0 18 chain 102489 chr9 141213431 + 80751256 80752422 L1PA4 6152 + 3183 4351 36134 333 1 0 164 1 2 244 0 1 13 0 1 410 chain 157877 chr9 141213431 + 80752422 80754233 L1PA4 6152 + 4355 6152 23613 351 0 1 67 0 1 29 32 12 568 1 0 757 0 5 6 chain 6204 chr9 141213431 + 80756370 80756439 LTR71B 605 - 334 403 183555 69 chain 76485 chr9 141213431 + 80756623 80757711 MER11A 1151 + 6 1151 45219 81 0 91 52 1 0 64 4 0 149 0 1 94 0 1 144 0 2 150 25 1 11 8 15 24 24 6 17 11 12 58 8 9 163 chain 44689 chr9 141213431 + 80758225 80758794 LTR71B 605 + 23 605 63388 103 10 21 4 1 0 64 0 1 177 0 1 44 0 1 166 chain 30209 chr9 141213431 + 80779950 80780307 L1PA6 6164 - 2 357 84163 6 3 0 323 0 1 25 chain 35617 chr9 141213431 + 80787583 80788014 MER9a3 513 + 79 513 75389 31 0 1 183 2 1 140 0 1 9 0 2 66 chain 326989 chr9 141213431 + 80796020 80799976 HERVH-int 3825 + 0 3825 12306 437 0 7 88 5 0 38 1 0 10 1 0 12 64 12 15 1 0 11 9 6 20 43 0 42 3 2 21 50 8 27 1 7 16 0 1 290 13 14 276 0 1 439 0 1 9 0 1 2014 chain 1194 chr9 141213431 + 80796641 80796676 HERVH-int 3825 + 649 683 189795 7 1 0 27 chain 24244 chr9 141213431 + 80801324 80801735 LTR7 482 + 0 482 108968 69 59 46 17 0 51 41 8 40 154 14 15 49 chain 15175 chr9 141213431 + 80804622 80804974 THE1B 368 - 6 368 140841 33 24 23 66 3 12 14 108 107 40 0 3 64 chain 524530 chr9 141213431 + 80815572 80822307 L1PA7 6471 + 0 6470 4723 242 11 17 152 0 1 380 0 33 286 14 0 131 6 12 38 6 9 48 6 5 435 0 1 77 0 2 5 7 6 13 1 4 412 1 0 78 0 1 243 9 1 211 0 1 546 0 1 151 9 17 7 4 0 1005 1 0 7 0 1 372 329 0 32 0 2 34 0 11 557 0 1 31 1 0 180 0 4 18 0 4 35 0 1 335 0 4 11 0 1 258 chain 20311 chr9 141213431 + 80824868 80825109 L1PA4 6152 - 1 242 126201 139 7 0 8 1 8 86 chain 5168 chr9 141213431 + 80828315 80828384 MER53 195 + 113 181 193367 19 1 0 49 chain 3817 chr9 141213431 + 80832990 80833032 Tigger3b 1229 + 797 839 210140 42 chain 27779 chr9 141213431 + 80836785 80837139 THE1B 368 - 0 368 93767 193 2 1 115 0 15 44 chain 64782 chr9 141213431 + 80898292 80899491 LTR12 884 - 2 884 50665 166 254 0 52 151 0 197 5 4 63 0 22 37 0 67 274 chain 10559 chr9 141213431 + 80898460 80898588 LTR12 884 - 37 165 158004 128 chain 5909 chr9 141213431 + 80898620 80898691 LTR12 884 - 179 250 149313 71 chain 7938 chr9 141213431 + 80898764 80898856 LTR12 884 - 87 179 143775 92 chain 8095 chr9 141213431 + 80906185 80906329 Tigger3c 601 + 406 567 170521 28 16 32 18 10 11 72 chain 3731 chr9 141213431 + 80930171 80930279 MIRb 242 + 22 133 211438 14 53 56 41 chain 508729 chr9 141213431 + 80949257 80955704 L1PA6 6164 + 0 6162 6263 124 0 1 112 0 2 23 2 1 191 5 6 58 0 2 47 1 0 232 1 2 222 2 1 21 0 1 122 0 2 15 1 0 78 1 0 579 321 0 58 0 1 329 0 26 26 1 0 48 1 2 5 0 2 171 8 6 7 0 2 697 0 1 263 0 2 194 4 3 20 8 0 355 2 5 236 0 2 59 0 4 1037 0 1 62 5 6 684 3 0 6 chain 101830 chr9 141213431 + 80959431 80960565 L1PA4 6152 - 249 1380 36306 742 3 0 389 chain 3909 chr9 141213431 + 80969413 80969458 MIR 256 + 70 115 208713 45 chain 22856 chr9 141213431 + 80976501 80976820 AluY 311 + 0 305 116300 123 30 3 143 0 13 23 chain 118515 chr9 141213431 + 81024731 81026228 LTR12C 1709 + 0 1709 31614 300 0 1 161 5 7 180 0 119 69 1 0 275 1 0 4 8 6 95 18 11 164 0 102 124 18 17 74 chain 57780 chr9 141213431 + 81034326 81034980 L1PA4 6152 - 9 667 54092 138 1 5 515 chain 67978 chr9 141213431 + 81045909 81046743 LTR12 884 + 0 884 49255 264 0 25 17 1 3 8 0 25 36 2 0 506 chain 5345 chr9 141213431 + 81046964 81047232 MLT1B 390 + 27 276 191595 29 0 10 22 27 26 11 34 33 16 102 75 27 chain 8685 chr9 141213431 + 81057460 81057559 LTR12C 1709 + 932 1031 167277 99 chain 277026 chr9 141213431 + 81070810 81074619 L1PB1 5432 + 1586 5420 14813 14 0 4 106 2 1 398 0 4 388 1 0 9 0 5 323 1 4 40 0 7 41 15 19 186 0 8 344 0 4 81 8 7 4 0 1 83 12 14 40 8 0 7 4 9 331 9 14 73 0 4 38 2 10 402 4 8 143 1 2 49 3 4 219 19 19 50 11 4 7 1 0 26 1 0 7 1 0 9 17 11 48 7 7 15 6 5 39 1 0 15 3 0 5 58 45 24 5 7 14 1 0 13 1 0 16 chain 30121 chr9 141213431 + 81074744 81075098 L1PA7 6471 + 4550 4912 84423 119 0 8 235 chain 70040 chr9 141213431 + 81075103 81075922 L1PA7 6471 + 4918 5753 48375 555 0 5 121 0 4 17 0 7 126 chain 50317 chr9 141213431 + 81075922 81076549 L1PA7 6471 + 5756 6417 58775 450 5 8 44 0 19 18 0 2 21 2 12 87 chain 40018 chr9 141213431 + 81078461 81078985 MER1A 529 - 5 529 69297 73 3 0 418 12 15 18 chain 5822 chr9 141213431 + 81104213 81104490 MER82 654 + 351 599 186919 38 59 60 26 120 90 34 chain 36534 chr9 141213431 + 81138930 81139400 MER4A1 472 + 0 472 74193 100 6 8 56 2 1 133 0 1 173 chain 3639 chr9 141213431 + 81140048 81140093 MSTB2 466 - 403 453 212987 17 0 5 28 chain 66437 chr9 141213431 + 81150132 81150851 L1PA2 6032 + 5313 6032 49901 719 chain 4036 chr9 141213431 + 81151785 81151830 MER44D 709 + 72 117 206839 45 chain 22722 chr9 141213431 + 81160059 81160417 THE1D 372 - 0 368 116973 125 5 11 15 51 55 162 chain 3449 chr9 141213431 + 81161396 81161435 U6 107 + 0 39 216213 39 chain 3703 chr9 141213431 + 81163051 81163094 MADE1 96 - 53 96 211894 43 chain 3234 chr9 141213431 + 81221703 81221744 L1MC1 2226 + 2152 2192 220343 33 1 0 7 chain 22677 chr9 141213431 + 81243836 81244113 AluSp 311 - 11 286 117179 168 2 0 107 chain 132539 chr9 141213431 + 81262202 81263808 L1PA7 6471 + 4848 6461 27517 766 0 3 56 4 1 29 1 0 15 0 3 72 0 2 89 0 1 423 1 3 150 chain 190824 chr9 141213431 + 81265465 81267560 L1PA3long 6157 - 1423 3522 19967 372 1 5 1722 chain 132545 chr9 141213431 + 81267560 81269002 L1PA3long 6157 + 4715 6157 27456 1442 chain 29320 chr9 141213431 + 81287103 81287542 MLT2A1 477 - 0 477 87438 27 0 1 26 12 38 13 15 14 38 0 1 66 17 31 51 3 0 171 chain 25124 chr9 141213431 + 81319782 81320451 THE1A 353 + 0 353 104157 40 7 8 48 1 0 16 0 2 5 8 6 100 316 0 128 chain 28589 chr9 141213431 + 81350723 81351026 AluYg6 310 - 7 310 90788 303 chain 35376 chr9 141213431 + 81352360 81352745 L1PA2 6032 - 713 1098 75697 385 chain 65841 chr9 141213431 + 81352745 81353457 L1PA2 6032 + 5318 6030 50171 712 chain 27407 chr9 141213431 + 81408877 81409250 THE1C 375 - 0 375 94945 25 1 0 47 4 5 111 2 3 7 1 0 91 0 1 73 0 1 11 chain 22434 chr9 141213431 + 81441004 81441294 AluY 311 + 0 286 118323 34 8 3 89 0 1 159 chain 56396 chr9 141213431 + 81479162 81479775 L1PA2 6032 + 5411 6024 54907 613 chain 376254 chr9 141213431 + 81489453 81493570 L1PA2 6032 + 1908 6030 10874 2444 0 1 807 0 4 866 chain 7399 chr9 141213431 + 81535620 81535712 MER47A 366 + 158 250 174781 92 chain 34218 chr9 141213431 + 81561262 81562430 THE1C-int 1605 + 0 569 77327 26 8 9 87 7 61 78 14 3 25 650 0 156 12 19 105 chain 27995 chr9 141213431 + 81562454 81562809 THE1A 353 + 0 353 93016 110 1 0 57 2 1 185 chain 18491 chr9 141213431 + 81610146 81610348 L1PA3long 6157 - 0 202 131530 202 chain 36761 chr9 141213431 + 81623223 81623683 LTR2 463 + 0 463 73860 60 1 0 70 0 4 146 9 8 92 0 1 82 chain 123085 chr9 141213431 + 81688949 81690324 L1PA3long 6157 - 1391 2774 30013 409 1 9 965 chain 124465 chr9 141213431 + 81690324 81691683 L1PA3long 6157 + 4782 6142 29553 570 0 1 789 chain 128241 chr9 141213431 + 81696963 81698376 L1PA2 6032 - 2 1426 28509 131 4 14 306 0 1 972 chain 19907 chr9 141213431 + 81702880 81703242 THE1B 368 - 0 368 127455 56 7 6 57 66 72 50 18 19 108 chain 552695 chr9 141213431 + 81712767 81718795 L1PA2 6032 - 3 6031 1112 1970 0 1 241 0 1 767 1 0 2793 1 0 255 chain 28651 chr9 141213431 + 81725772 81726083 AluYg6 310 - 3 310 90518 176 4 0 131 chain 19287 chr9 141213431 + 81743192 81743413 L1PA5 6144 - 2 223 129270 221 chain 3449 chr9 141213431 + 81756928 81757031 MER2 342 - 26 130 216215 18 51 52 34 chain 534812 chr9 141213431 + 81792200 81798192 L1PA3long 6157 - 5 6153 3614 626 0 1 160 0 3 77 0 1 295 0 1 483 5 0 141 0 4 1583 5 0 258 4 0 1610 0 128 88 0 16 101 1 5 411 0 12 144 chain 7969 chr9 141213431 + 81898329 81898435 MLT1A0 366 + 211 318 171226 66 1 2 39 chain 29130 chr9 141213431 + 81900531 81900841 AluYg6 310 + 0 310 88410 310 chain 22814 chr9 141213431 + 81933965 81934321 THE1B 368 + 1 368 116513 40 47 63 72 1 0 21 3 0 96 1 0 75 chain 9929 chr9 141213431 + 81990729 81990902 MER2 342 + 139 317 160930 7 0 3 113 19 20 11 7 8 16 chain 111627 chr9 141213431 + 82036697 82038011 L1PA7 6471 - 1 1319 33766 226 0 1 569 0 1 54 1 4 72 1 0 391 chain 65434 chr9 141213431 + 82038018 82038807 L1PA7 6471 + 4339 5136 50364 222 1 0 70 0 1 100 5 4 223 0 9 168 chain 16511 chr9 141213431 + 82038807 82039000 L1PA5 6144 + 5944 6138 136886 162 0 1 31 chain 536812 chr9 141213431 + 82053887 82059884 L1PA3long 6157 + 11 6152 3338 141 0 1 400 1 0 20 1 0 209 0 128 252 0 3 84 1 0 196 0 1 833 0 1 952 0 4 452 2 0 473 0 1 1058 0 10 817 0 3 5 3 0 97 chain 11990 chr9 141213431 + 82073026 82073189 MER47A 366 + 70 233 152250 9 0 2 12 5 3 137 chain 16505 chr9 141213431 + 82088154 82088385 L1PA8 5853 + 5628 5853 136902 54 9 6 12 2 1 39 2 1 19 1 0 93 chain 32061 chr9 141213431 + 82089414 82089868 LTR12F 595 - 0 595 80751 180 12 13 52 0 64 58 4 70 14 0 2 7 4 0 23 0 12 100 chain 543752 chr9 141213431 + 82109468 82115495 L1PA3long 6157 - 0 6156 2241 14 0 3 750 2 1 1700 3 1 2666 1 0 118 0 128 397 0 1 225 0 1 151 chain 2973 chr9 141213431 + 82129701 82129742 Charlie1b 519 + 323 362 225635 33 2 0 6 chain 2797 chr9 141213431 + 82146480 82146527 MER104 178 - 122 170 228788 27 4 5 16 chain 70006 chr9 141213431 + 82154658 82155574 L1PA8 5853 + 4922 5852 48393 83 0 1 4 6 4 75 8 9 466 1 0 36 1 0 8 2 0 65 7 6 61 3 21 85 0 1 5 chain 3673 chr9 141213431 + 82158914 82158993 MER5B 177 - 86 164 212327 21 24 23 34 chain 466967 chr9 141213431 + 82159444 82164646 L1PA4 6152 + 963 6152 8150 281 2 0 1422 10 0 511 1 0 63 0 1 51 1 0 1599 0 1 1255 1 0 5 chain 143812 chr9 141213431 + 82221312 82223030 L1PA6 6164 - 17 2047 25516 63 0 1 530 0 2 135 0 3 556 4 0 62 22 0 115 2 1 42 0 327 108 0 6 79 chain 29459 chr9 141213431 + 82239924 82240233 AluYa5 310 - 1 310 86796 309 chain 20487 chr9 141213431 + 82258941 82259313 THE1C 375 + 0 374 125663 63 74 80 36 0 2 5 17 12 151 1 0 25 chain 220631 chr9 141213431 + 82293538 82296021 L1PA4 6152 - 0 2481 17841 78 0 1 594 0 2 169 0 4 919 10 1 713 chain 98403 chr9 141213431 + 82348744 82349885 L1P3 4156 + 2887 4062 37193 208 0 3 171 0 2 475 0 1 57 0 32 105 3 0 57 2 1 63 chain 4021 chr9 141213431 + 82358235 82358279 L1MA8 2339 + 1789 1833 207060 44 chain 8938 chr9 141213431 + 82361026 82361251 Zaphod 902 + 107 354 165934 24 78 102 23 12 10 88 chain 25979 chr9 141213431 + 82367966 82368381 THE1B-int 1605 - 1235 1605 100104 65 1 2 23 1 7 154 54 0 99 6 8 12 chain 2975 chr9 141213431 + 82370811 82370846 MER5A 189 + 39 74 225527 35 chain 3689 chr9 141213431 + 82388949 82388998 L1MA4 2864 + 2757 2804 212099 9 2 0 38 chain 9307 chr9 141213431 + 82448605 82448764 MSTB1-int 1597 - 1000 1234 164036 20 29 104 110 chain 114006 chr9 141213431 + 82466412 82467668 L1PA3long 6157 - 2723 3991 33076 1172 0 12 84 chain 246536 chr9 141213431 + 82467668 82470376 L1PA3long 6157 + 3443 6152 16418 503 0 1 2205 chain 12591 chr9 141213431 + 82474539 82474722 L1PA15-16 3068 + 289 448 149875 32 22 0 32 2 0 95 chain 76778 chr9 141213431 + 82476137 82477193 MER11C 1089 + 0 1057 45091 246 0 9 62 0 4 68 8 10 105 0 4 24 61 63 95 0 4 5 1 0 38 0 1 127 0 1 102 39 5 30 0 9 45 chain 26764 chr9 141213431 + 82502141 82502424 AluYb8 318 - 1 284 97112 283 chain 52098 chr9 141213431 + 82526532 82527290 LTR17 781 - 12 781 57568 6 0 6 38 2 24 340 12 1 27 1 0 64 16 15 12 1 0 46 12 11 23 1 0 121 5 4 31 chain 35055 chr9 141213431 + 82528286 82528755 MER4A1 472 + 0 472 76109 16 3 6 11 1 0 277 1 0 92 1 3 67 chain 65577 chr9 141213431 + 82533630 82534429 L1PA7 6471 - 5 807 50306 7 2 0 143 16 19 597 0 2 34 chain 40718 chr9 141213431 + 82535987 82536487 L1PA7 6471 + 5971 6468 68280 480 0 1 6 4 0 10 chain 3869 chr9 141213431 + 82541256 82541302 MER21C 908 + 46 92 209323 46 chain 27083 chr9 141213431 + 82597487 82597833 THE1B 368 - 0 360 95991 199 2 1 109 0 15 36 chain 21593 chr9 141213431 + 82637394 82637802 MER21A 919 + 7 454 121798 51 13 26 39 2 0 49 44 41 77 0 22 45 41 50 47 chain 36590 chr9 141213431 + 82651222 82651631 L1PA3long 6157 - 0 409 74112 409 chain 4267 chr9 141213431 + 82654460 82654521 MER41B 635 - 92 154 203666 31 1 2 29 chain 21696 chr9 141213431 + 82696425 82696725 AluSp 311 - 6 302 121404 26 3 0 124 0 1 4 20 18 123 chain 59194 chr9 141213431 + 82731508 82732258 L1P2 5180 - 4128 4876 53287 192 0 1 65 2 1 6 1 0 122 0 1 99 7 6 44 1 0 211 chain 430205 chr9 141213431 + 82732328 82737249 L1PA4 6152 + 1220 6152 9305 16 0 2 6 2 0 70 50 49 958 0 1 104 0 1 866 0 9 908 0 1 1941 chain 37480 chr9 141213431 + 82752209 82752656 LTR7 482 + 0 482 72843 247 0 31 99 1 3 39 12 14 49 chain 297519 chr9 141213431 + 82752658 82756359 HERVH-int 3825 + 0 3816 13553 212 0 11 120 0 1 191 14 9 26 1 0 10 1 0 9 4 0 14 32 5 11 24 0 11 88 1 67 0 20 11 2 1 48 0 1 310 3 14 120 15 0 462 4 31 78 8 6 248 0 2 404 1 0 666 8 218 478 chain 4484 chr9 141213431 + 82753338 82753396 HERVH-int 3825 + 668 725 190880 33 1 0 24 chain 35490 chr9 141213431 + 82757626 82758063 LTR7 482 + 0 482 75567 227 4 34 44 0 3 104 9 21 49 chain 3928 chr9 141213431 + 82777140 82777186 MADE1 96 + 50 96 208445 46 chain 6301 chr9 141213431 + 82791458 82791541 AluJr4 308 - 2 83 182793 22 2 0 59 chain 11549 chr9 141213431 + 82799970 82800114 LTR12C 1709 - 506 775 154105 10 0 125 134 chain 30183 chr9 141213431 + 82845173 82845491 AluYb8 318 - 0 318 84240 318 chain 154191 chr9 141213431 + 82853871 82855851 L1PA8 5853 + 3858 5853 24076 858 0 6 262 0 4 21 0 2 71 4 5 106 0 3 94 0 1 273 1 0 44 13 11 59 2 1 8 1 4 8 0 1 18 45 43 92 chain 29299 chr9 141213431 + 82865784 82866099 L1HS 6032 - 718 1033 87572 315 chain 66271 chr9 141213431 + 82866099 82866807 L1HS 6032 + 5324 6032 49968 708 chain 83940 chr9 141213431 + 82906278 82907245 L1PA4 6152 - 9 979 41934 330 0 1 90 1 2 424 1 2 121 chain 88397 chr9 141213431 + 82910288 82911476 L1PA10 4194 + 2965 4160 40221 170 0 1 324 0 1 45 3 0 143 10 12 322 6 8 81 0 5 6 0 5 24 8 3 35 1 0 10 chain 73733 chr9 141213431 + 82959800 82960691 L1P1 4361 + 2 889 46653 567 0 3 129 7 0 188 chain 45053 chr9 141213431 + 82960691 82961193 L1PA3long 6157 + 5655 6157 62993 502 chain 4777 chr9 141213431 + 82977769 82977834 MER101 471 - 0 64 197616 19 1 0 45 chain 76318 chr9 141213431 + 82986642 82987690 MER11C 1089 - 26 1089 45306 25 0 1 108 10 9 17 0 1 38 0 1 125 0 1 38 1 0 4 1 5 112 16 15 177 1 0 65 0 4 36 0 29 9 22 0 243 chain 5000 chr9 141213431 + 83002320 83002403 MIR 256 + 71 153 195133 58 13 12 12 chain 74078 chr9 141213431 + 83005538 83006425 L1PA7 6471 + 5577 6468 46472 43 2 5 498 1 2 343 chain 22721 chr9 141213431 + 83007293 83007665 THE1C 375 - 0 375 116979 26 1 0 150 22 25 59 51 52 63 chain 43082 chr9 141213431 + 83012425 83012965 MER41A 554 - 8 552 65315 115 0 1 115 0 1 124 5 6 91 0 1 90 chain 3144 chr9 141213431 + 83020220 83020255 L1MCb 1641 + 35 70 222077 35 chain 34469 chr9 141213431 + 83022270 83022697 LTR22A 463 - 36 463 76960 427 chain 40354 chr9 141213431 + 83029463 83030071 L1PREC2 3366 - 499 1132 68803 13 3 0 4 1 0 44 1 0 32 29 27 36 1 0 155 6 18 23 0 2 29 0 1 199 5 23 27 chain 165231 chr9 141213431 + 83067024 83069137 L1PA8A 6298 + 4179 6290 22622 158 0 1 24 0 1 642 0 7 138 11 0 87 10 0 33 1 3 55 7 11 68 0 1 77 1 0 609 5 10 79 5 6 19 2 0 82 chain 10964 chr9 141213431 + 83069321 83069557 MSTA 426 + 157 408 156345 42 68 66 27 8 28 15 3 0 73 chain 351176 chr9 141213431 + 83090365 83094283 L1PA4 6152 - 0 3925 11563 6 0 5 835 2 1 443 0 1 1575 1 0 19 0 2 82 0 1 955 chain 39637 chr9 141213431 + 83097301 83097799 LTR3B_ 500 + 0 500 69843 238 7 10 54 1 0 198 chain 5377 chr9 141213431 + 83110451 83110658 MSTD 398 - 41 257 191228 32 1 2 29 103 111 17 7 7 18 chain 25787 chr9 141213431 + 83114638 83114915 AluYb8 318 - 2 318 100924 86 0 39 191 chain 27115 chr9 141213431 + 83145363 83145709 THE1A 353 - 0 353 95887 230 0 8 5 1 0 110 chain 127810 chr9 141213431 + 83145709 83147287 THE1A-int 1579 - 0 1579 28616 44 0 1 200 0 1 419 3 4 412 8 4 131 2 0 19 0 4 340 chain 12954 chr9 141213431 + 83147287 83147452 THE1A 353 - 0 165 148412 9 0 1 145 1 0 10 chain 22878 chr9 141213431 + 83147452 83147738 L1P3 4156 + 3766 4053 116191 66 6 7 214 chain 12640 chr9 141213431 + 83147738 83147894 THE1A-int 1579 - 1423 1579 149687 156 chain 27055 chr9 141213431 + 83147894 83148247 THE1A 353 - 0 353 96096 243 5 4 97 0 1 8 chain 27245 chr9 141213431 + 83149680 83150011 L1PA6 6164 - 2081 2411 95443 278 5 4 48 chain 177416 chr9 141213431 + 83150022 83152070 L1PA6 6164 + 4105 6153 21214 429 0 1 114 1 0 29 0 1 636 1 0 838 chain 88093 chr9 141213431 + 83159900 83160853 L1PA3long 6157 - 859 1812 40340 953 chain 76792 chr9 141213431 + 83160853 83161708 L1PA3long 6157 + 5303 6157 45085 80 0 1 282 2 0 491 chain 13643 chr9 141213431 + 83166909 83167072 L1PA5 6144 - 3 166 145806 163 chain 142156 chr9 141213431 + 83194031 83195654 L1PA5 6144 - 1 1617 25794 8 3 0 769 0 1 17 5 1 727 1 0 93 chain 69282 chr9 141213431 + 83224118 83224882 L1PA3long 6157 - 4 768 48465 764 chain 76271 chr9 141213431 + 83224882 83225740 L1PA2 6032 - 1 862 45325 766 6 9 86 chain 114792 chr9 141213431 + 83225741 83227033 L1P1 4361 + 3038 4328 32847 1112 1 0 155 1 0 23 chain 13455 chr9 141213431 + 83243107 83243265 AluSq 315 + 145 303 146499 158 chain 28806 chr9 141213431 + 83256990 83257368 L1PA8A 6298 + 5912 6289 89864 269 13 4 7 0 9 35 1 0 53 chain 17544 chr9 141213431 + 83259702 83260062 THE1B 368 + 0 368 134145 106 28 29 23 91 98 112 chain 84405 chr9 141213431 + 83267027 83269022 L1PA4 6152 - 4 1959 5492 101 0 1 33 0 7 9 2 0 259 54 0 433 1 5 218 0 1 564 1 0 210 0 4 110 chain 544013 chr9 141213431 + 83269031 83275050 L1PA2 6032 - 3 6032 2209 3286 0 1 541 0 2 628 0 3 281 0 4 547 1 0 663 0 1 72 chain 177483 chr9 141213431 + 83275050 83279245 L1PA4 6152 - 1959 6150 5492 511 3 4 395 1 0 100 1 0 475 19 19 1544 0 2 409 5 0 732 chain 17390 chr9 141213431 + 83282701 83282905 L1PA7 6471 - 2 206 134534 204 chain 17893 chr9 141213431 + 83282905 83283104 L1PA7 6471 + 6075 6274 133120 199 chain 4557 chr9 141213431 + 83283104 83283160 L1MA4A 3247 - 1443 1497 199215 31 2 0 23 chain 9000 chr9 141213431 + 83340117 83340267 THE1C-int 1605 - 1399 1605 165599 45 6 63 73 10 9 16 chain 26682 chr9 141213431 + 83340278 83340643 THE1C 375 - 11 375 97380 14 1 0 136 8 7 20 2 0 5 0 3 179 chain 162666 chr9 141213431 + 83341581 83343392 L1PA4 6152 - 0 1819 22982 846 0 7 659 0 1 306 chain 33685 chr9 141213431 + 83353453 83353828 L1PA3long 6157 + 5774 6149 78119 375 chain 550749 chr9 141213431 + 83356577 83362604 L1PA2 6032 - 0 6032 1346 1215 0 1 4241 0 1 318 1 0 123 1 5 128 chain 22951 chr9 141213431 + 83364076 83364350 AluSc5 308 - 24 298 115853 274 chain 53015 chr9 141213431 + 83396490 83397080 L1PA4 6152 - 16 606 57007 590 chain 76318 chr9 141213431 + 83400499 83401377 L1PA7 6471 + 5579 6459 45305 35 1 4 700 1 0 141 chain 43726 chr9 141213431 + 83423415 83423966 MLT2A2 560 + 0 560 64535 114 1 0 66 1 0 222 1 12 146 chain 112015 chr9 141213431 + 83429902 83431171 L1PA4 6152 - 0 1289 33661 6 0 5 833 0 4 337 1 12 92 chain 388334 chr9 141213431 + 83431171 83435607 L1PA4 6152 + 398 4834 10501 1446 0 4 98 2 1 831 1 0 400 1 0 1339 2 1 316 chain 61001 chr9 141213431 + 83444704 83445382 L1PA4 6152 - 2 681 52333 306 0 1 372 chain 39644 chr9 141213431 + 83452809 83453264 L1PA7 6471 - 13 470 69829 148 0 2 307 chain 13776 chr9 141213431 + 83469563 83469867 L1PA15 4387 - 35 322 145349 18 0 3 7 18 8 20 44 40 38 2 1 12 18 16 4 1 0 55 1 0 26 1 0 39 chain 27144 chr9 141213431 + 83512293 83512632 L1PA6 6164 + 5817 6157 95781 199 2 3 138 chain 85057 chr9 141213431 + 83516181 83517154 L1PA5 6144 + 5159 6137 41492 132 0 4 510 0 1 331 chain 117585 chr9 141213431 + 83529440 83530799 L1PA4 6152 - 3103 4460 31930 736 4 1 225 5 6 389 chain 9799 chr9 141213431 + 83530799 83530911 L1PA4 6152 + 3052 3164 159851 112 chain 80419 chr9 141213431 + 83530912 83531879 L1PA4 6152 + 3164 4127 43422 365 0 3 95 5 1 56 3 0 443 chain 175650 chr9 141213431 + 83531880 83533880 L1PA4 6152 + 4127 6152 21380 790 0 1 270 0 20 96 0 4 844 chain 5235 chr9 141213431 + 83536332 83536388 L1PA4 6152 - 169 225 192673 56 chain 3524 chr9 141213431 + 83557062 83557305 L1MCa 1829 + 1557 1692 214977 27 186 78 30 chain 2696 chr9 141213431 + 83564509 83564739 MER33 330 + 62 294 230262 22 181 183 27 chain 45227 chr9 141213431 + 83581793 83582334 MLT2A2 560 + 1 547 62798 27 0 5 170 0 1 20 7 6 317 chain 124924 chr9 141213431 + 83584827 83586422 THE1A-int 1579 + 0 1579 29418 393 0 1 739 18 1 14 17 16 116 0 1 298 chain 34137 chr9 141213431 + 83594254 83594683 MLT2A1 477 - 8 477 77427 42 0 42 216 5 2 78 0 1 88 chain 9969 chr9 141213431 + 83605081 83605282 L1PB1 5432 + 5221 5402 160732 15 1 0 45 2 1 14 1 0 4 2 0 13 38 27 6 2 0 24 1 0 22 1 0 10 chain 29006 chr9 141213431 + 83610475 83610945 LTR3B_ 500 - 43 479 88961 17 38 1 33 26 27 28 8 7 45 0 1 207 3 5 65 chain 39176 chr9 141213431 + 83619862 83620326 L1PA7 6471 + 6004 6465 70494 453 3 0 8 chain 23053 chr9 141213431 + 83622043 83622317 AluSg7 307 - 21 296 115380 154 0 1 120 chain 293860 chr9 141213431 + 83624398 83627961 HERVH-int 3825 + 0 3823 13774 98 5 6 229 1 0 43 0 2 95 1 58 39 1 0 10 1 0 10 4 0 13 7 1 13 4 21 19 22 0 42 1 0 64 0 2 14 0 1 320 0 4 1391 5 6 609 0 1 9 8 218 88 23 23 374 chain 29031 chr9 141213431 + 83630452 83630756 AluYb8 318 + 0 304 88848 304 chain 512512 chr9 141213431 + 83777219 83783511 L1PA7 6471 + 15 6470 5921 181 9 15 118 13 183 209 4 14 97 0 1 236 3 0 272 21 5 10 0 1 535 4 0 317 0 2 116 0 11 300 13 0 846 1 2 43 1 0 927 0 1 77 8 0 279 0 4 808 0 4 314 0 1 363 6 0 7 7 11 134 2 0 11 chain 24618 chr9 141213431 + 83784515 83784795 L1PA7 6471 - 18 298 106897 280 chain 32847 chr9 141213431 + 83815341 83815722 L1PA7 6471 + 5236 5621 79464 319 1 5 61 chain 72356 chr9 141213431 + 83815722 83816554 L1PA7 6471 + 5624 6456 47317 832 chain 544341 chr9 141213431 + 83832070 83838212 L1PA4 6152 + 3 6148 2165 277 0 1 175 12 6 118 1 0 602 1 0 54 1 0 1149 1 5 2245 1 0 106 0 1 421 0 1 136 0 5 324 0 1 518 chain 158286 chr9 141213431 + 83875933 83878131 L1PA6 6164 + 4257 6160 23557 21 0 8 775 310 0 130 0 1 120 0 4 331 0 1 351 0 1 160 chain 20224 chr9 141213431 + 83879116 83879382 AluSg7 307 + 47 303 126455 84 0 1 154 11 0 17 chain 3622 chr9 141213431 + 83883331 83883372 MLT2A2 560 - 0 41 213314 41 chain 207859 chr9 141213431 + 83883784 83886368 HERVL-int 5654 - 7 2592 18653 210 1 0 6 1 7 58 1 2 13 0 4 79 4 3 36 23 23 293 8 11 373 3 0 308 0 1 126 0 2 232 15 3 472 1 2 321 chain 9545 chr9 141213431 + 83900086 83900210 L1PB1 5432 - 332 456 162855 124 chain 385747 chr9 141213431 + 83901706 83907042 L1PB1 5432 - 22 5316 10584 6 1 0 13 1 0 21 8 7 17 2 0 14 9 6 17 27 15 13 1 0 43 3 5 12 2 1 53 2 0 5 20 15 8 2 0 25 5 0 9 1 2 48 4 3 6 0 1 218 28 23 17 0 3 79 0 2 82 15 10 266 11 7 44 12 12 37 0 1 326 0 1 126 0 1 58 4 7 32 1 2 133 1 0 75 0 1 276 0 2 295 11 12 242 1 0 96 0 5 53 15 7 361 0 1 36 0 1 4 1 0 550 3 7 112 27 15 5 2 0 7 1 0 9 0 2 306 1 0 101 1 0 108 0 5 463 1 0 285 chain 11469 chr9 141213431 + 83910635 83910782 MER2 342 - 48 195 154426 147 chain 66777 chr9 141213431 + 83917640 83918650 L1PB 1623 + 421 1336 49743 23 0 1 32 1 0 8 1 0 97 14 14 77 2 0 76 110 23 343 0 3 65 17 5 117 0 4 27 chain 43495 chr9 141213431 + 83922539 83923087 MLT2A2 560 - 2 560 64821 141 0 11 222 1 0 184 chain 88467 chr9 141213431 + 83930902 83931954 MER11B 1079 - 26 1070 40199 53 0 1 229 8 2 509 3 0 250 chain 6808 chr9 141213431 + 83962272 83962410 MER34A1 583 - 64 200 178891 14 1 0 15 1 0 25 7 0 7 0 1 4 15 22 18 1 0 30 chain 5721 chr9 141213431 + 83967342 83967415 L1M1 2793 + 1003 1076 187912 73 chain 2784 chr9 141213431 + 83967954 83967987 L1PB1 5432 - 1662 1695 228940 33 chain 111400 chr9 141213431 + 83968011 83969422 L1PB1 5432 - 1696 3113 33836 282 1 2 441 0 4 151 0 1 9 6 4 108 0 1 226 7 8 180 chain 113328 chr9 141213431 + 83969440 83971105 L1PB1 5432 + 3777 5410 33271 308 1 0 135 9 10 126 2 0 129 13 15 129 8 6 69 1 3 55 12 11 8 0 1 265 1 2 4 1 0 50 15 11 20 1 0 13 16 11 11 3 1 50 2 1 12 2 4 43 1 0 16 3 0 7 15 6 17 9 6 14 2 0 17 8 7 21 1 0 13 1 0 6 chain 99387 chr9 141213431 + 83978559 83981331 L1PREC2 3366 + 1149 3006 36931 122 1151 313 5 3 0 70 42 41 425 0 1 4 1 0 11 0 1 4 1 0 290 25 3 278 1 0 6 1 0 4 0 1 24 2 0 16 6 7 24 10 9 38 92 63 12 9 7 16 44 27 35 chain 556027 chr9 141213431 + 84047212 84053352 L1PA3long 6157 + 4 6157 723 618 0 1 337 0 1 88 0 2 111 0 3 1041 0 2 3102 0 4 843 chain 6061 chr9 141213431 + 84053462 84053600 MSTB1 431 + 0 132 184736 13 6 5 42 22 16 21 7 8 27 chain 24744 chr9 141213431 + 84081062 84081356 AluY 311 + 4 299 106201 128 0 1 166 chain 28763 chr9 141213431 + 84118744 84119095 LTR12D 1347 - 0 450 90051 264 1 0 35 0 98 24 0 2 27 chain 12716 chr9 141213431 + 84122831 84123114 LTR12C 1709 + 888 1052 149400 147 119 0 17 chain 23119 chr9 141213431 + 84125193 84125487 AluY 311 + 25 294 115040 101 25 0 168 chain 23315 chr9 141213431 + 84134422 84134784 THE1D 372 - 0 372 114129 117 9 11 51 25 27 85 14 20 61 chain 8857 chr9 141213431 + 84152722 84152875 L1PB1 5432 - 56 190 166334 6 1 0 24 2 0 14 1 0 5 2 0 16 9 0 11 2 0 4 1 0 16 1 0 38 chain 24791 chr9 141213431 + 84175933 84176309 THE1B 368 + 0 368 105940 15 2 0 32 0 1 63 11 12 46 31 24 100 1 0 75 chain 5495 chr9 141213431 + 84183162 84183304 MER96B 391 - 1 137 190099 14 24 22 12 17 16 35 1 0 23 2 0 14 chain 20151 chr9 141213431 + 84209171 84209404 L1PA7 6471 + 6036 6267 126671 101 2 0 130 chain 104821 chr9 141213431 + 84220477 84221698 L1PA6 6164 + 4947 6162 35545 244 6 1 120 0 4 581 6 0 77 1 2 186 chain 7773 chr9 141213431 + 84227980 84228075 AluSq10 312 + 204 298 172465 58 1 0 36 chain 22550 chr9 141213431 + 84260007 84260294 AluSp 311 + 15 296 117801 158 6 1 26 0 1 28 2 0 67 chain 22906 chr9 141213431 + 84273843 84274122 AluSc5 308 - 30 308 116087 210 1 0 68 chain 5766 chr9 141213431 + 84304307 84304374 MER52D 1964 - 1779 1847 187476 31 0 1 36 chain 25775 chr9 141213431 + 84313428 84313717 AluY 311 + 4 294 100986 128 0 1 161 chain 19650 chr9 141213431 + 84316508 84316731 L1PA4 6152 - 0 227 128248 6 0 5 139 1 0 77 chain 159760 chr9 141213431 + 84324494 84326839 SVA_F 1814 + 11 1809 23368 690 0 40 147 3 0 42 0 1 16 2 15 122 226 0 186 372 0 539 chain 2824 chr9 141213431 + 84325516 84325548 SVA_F 1814 + 1260 1291 144133 14 1 0 17 chain 16377 chr9 141213431 + 84325573 84325742 SVA_F 1814 + 1091 1260 137268 169 chain 19445 chr9 141213431 + 84325928 84326206 SVA_F 1814 + 1094 1271 80676 25 50 0 19 49 0 39 1 0 10 1 0 84 chain 534 chr9 141213431 + 84325973 84326003 SVA_F 1814 + 962 992 151105 30 chain 4141 chr9 141213431 + 84326022 84326071 SVA_F 1814 + 898 947 113608 49 chain 6760 chr9 141213431 + 84326206 84326286 SVA_F 1814 + 1095 1169 113608 33 3 0 4 2 0 33 1 0 4 chain 33777 chr9 141213431 + 84334069 84334447 L1PA7 6471 - 3 381 77974 378 chain 25438 chr9 141213431 + 84336288 84336598 AluSg7 307 - 0 307 102508 20 2 0 182 1 0 105 chain 37828 chr9 141213431 + 84345450 84345938 LTR12F 595 + 12 522 72368 91 1 2 40 2 0 32 0 8 25 15 30 282 chain 24507 chr9 141213431 + 84346189 84346485 AluSp 311 + 4 300 107505 296 chain 6443 chr9 141213431 + 84389754 84389827 THE1B 368 + 243 316 181687 73 chain 25971 chr9 141213431 + 84415180 84415452 AluYa5 310 + 35 307 100134 272 chain 28108 chr9 141213431 + 84436796 84437108 AluYa5 310 + 0 310 92617 97 3 0 34 0 1 178 chain 28781 chr9 141213431 + 84458134 84458444 AluYa5 310 - 2 310 89976 182 1 0 8 1 0 118 chain 28176 chr9 141213431 + 84477107 84477402 AluYa5 310 - 15 310 92385 295 chain 29790 chr9 141213431 + 84478765 84479076 AluYb8 318 - 7 318 85501 311 chain 18411 chr9 141213431 + 84480621 84481042 L1PB1 5432 - 3 390 131744 9 2 0 16 1 0 13 1 0 21 1 0 5 1 0 19 24 19 15 29 16 10 13 12 38 1 0 15 3 2 52 2 0 8 5 1 12 1 0 11 1 0 21 4 1 8 1 2 21 0 3 37 chain 7065 chr9 141213431 + 84511864 84511971 L1PA16 3655 + 3373 3481 176987 42 15 16 50 chain 143098 chr9 141213431 + 84522097 84524221 MER57-int 2662 - 0 2133 25639 7 2 0 30 10 7 26 9 4 6 1 0 26 3 0 6 1 0 7 1 0 4 103 92 11 18 12 11 5 0 15 0 5 60 11 6 80 0 1 162 1 4 171 3 0 102 0 2 188 0 16 191 7 6 33 0 2 171 4 6 62 1 4 18 0 4 180 0 10 36 0 8 341 chain 100916 chr9 141213431 + 84570113 84571463 THE1B-int 1605 - 9 1605 36531 48 0 1 116 0 1 90 1 0 46 0 7 76 0 207 134 30 38 368 7 32 50 2 0 75 0 1 288 7 6 12 chain 25319 chr9 141213431 + 84575614 84575900 AluYa5 310 + 26 310 103126 38 2 0 246 chain 23308 chr9 141213431 + 84577118 84577395 AluSp 311 - 24 301 114158 277 chain 71005 chr9 141213431 + 84630518 84631314 L1PA4 6152 - 9 806 47925 676 1 2 119 chain 22954 chr9 141213431 + 84635727 84636015 MER47A 366 + 58 346 115835 288 chain 3491 chr9 141213431 + 84668933 84668989 LTR12C 1709 - 672 728 152062 56 chain 13526 chr9 141213431 + 84668989 84669204 LTR12C 1709 - 521 775 146261 69 43 82 103 chain 62408 chr9 141213431 + 84693890 84694623 L1PA5 6144 - 6 763 51721 142 1 0 130 8 32 422 0 1 30 chain 5393 chr9 141213431 + 84710974 84711102 L1PA16 3655 - 36 135 191057 16 19 11 8 18 0 6 3 0 58 chain 35430 chr9 141213431 + 84713547 84714043 LTR12 884 + 0 736 75641 25 1 0 31 41 0 152 0 179 160 0 103 86 chain 25163 chr9 141213431 + 84739333 84739634 AluSq10 312 - 1 302 103949 301 chain 25261 chr9 141213431 + 84784338 84784602 AluYa5 310 + 34 298 103410 264 chain 19909 chr9 141213431 + 84792500 84792748 AluSc 308 + 48 295 127446 83 1 0 164 chain 19361 chr9 141213431 + 84805419 84805653 THE1B-int 1605 + 1371 1605 129043 187 1 0 37 0 1 9 chain 23529 chr9 141213431 + 84809138 84809510 THE1B 368 - 0 368 112968 75 1 0 98 42 38 41 7 9 59 0 1 34 2 0 13 chain 5004 chr9 141213431 + 84810447 84810551 MER31B 477 - 223 311 195101 49 12 13 16 17 0 10 chain 514175 chr9 141213431 + 84830514 84836985 L1PA7 6471 + 0 6461 5757 14 0 2 223 0 2 199 18 20 4 1 0 17 6 7 285 22 0 110 0 2 358 30 30 461 0 7 18 2 1 299 12 13 155 0 1 273 0 2 129 34 15 837 0 2 5 3 2 56 0 4 53 0 1 123 0 1 432 4 0 69 1 0 412 2 3 30 1 3 186 1 0 4 6 7 446 3 4 26 0 1 210 9 10 47 0 3 479 0 1 31 1 2 324 chain 70984 chr9 141213431 + 84841206 84842252 L1PA11 4918 - 289 1314 47934 18 47 33 11 2 0 13 1 0 15 10 6 13 8 3 6 4 0 23 1 0 13 2 0 80 1 0 65 5 0 304 3 22 338 1 0 62 chain 40991 chr9 141213431 + 84848294 84848822 L1PA8A 6298 + 5751 6288 67922 108 0 9 104 2 1 5 0 2 278 2 1 29 chain 35218 chr9 141213431 + 84851299 84851745 L1PA8A 6298 - 8 464 75899 132 0 2 271 0 6 6 0 2 37 chain 478398 chr9 141213431 + 84852066 84858376 L1PA7 6471 - 3 6471 7785 9 2 0 56 9 7 769 1 3 54 0 1 10 0 1 60 1 0 4 0 1 25 0 1 348 36 24 143 24 175 85 6 5 166 0 2 91 0 1 498 0 8 201 4 5 103 1 0 115 24 19 846 0 1 125 0 4 75 2 0 260 0 4 518 0 1 9 0 2 447 0 1 4 1 0 57 0 3 153 0 224 11 242 18 81 1 2 23 16 14 380 0 1 214 chain 4974 chr9 141213431 + 84888051 84888111 L1P1 4361 + 2540 2600 195426 60 chain 15826 chr9 141213431 + 84901368 84901800 L1M1 2793 + 661 1022 138866 41 42 29 9 2 0 5 2 0 11 1 0 8 54 48 18 2 0 9 1 0 35 42 0 19 15 12 75 0 2 21 1 0 19 chain 20854 chr9 141213431 + 84901800 84902129 THE1B 368 + 0 368 124443 169 1 0 8 32 72 57 3 1 17 7 9 35 chain 21837 chr9 141213431 + 84909191 84909607 MSTA 426 - 21 426 120864 152 73 64 37 5 1 43 8 9 69 14 15 15 chain 49697 chr9 141213431 + 84939219 84939822 L1PA7 6471 - 9 619 59238 142 5 13 176 2 1 278 chain 25004 chr9 141213431 + 84939822 84940155 L1PA11 4918 + 4155 4489 104760 155 0 4 74 7 6 13 2 0 82 chain 25480 chr9 141213431 + 84959802 84960163 THE1B 368 + 0 368 102317 172 8 7 15 2 0 6 0 2 104 16 24 38 chain 37659 chr9 141213431 + 84960163 84960634 THE1B-int 1605 + 0 497 72603 428 2 28 41 chain 3788 chr9 141213431 + 84983114 84983198 MER5B 177 - 76 158 210542 21 29 27 34 chain 250865 chr9 141213431 + 84991553 84995497 L1PA10 4194 + 175 4161 16187 11 2 0 7 9 6 8 2 0 9 8 4 12 22 18 21 2 0 15 1 0 8 58 32 11 13 11 6 1 0 6 0 3 9 0 3 7 0 2 11 10 0 8 1 0 14 0 1 64 12 10 481 8 13 239 9 82 215 0 3 117 28 32 333 0 2 140 3 7 70 0 4 138 10 9 221 309 90 14 0 216 19 0 4 214 0 4 111 1 0 82 0 1 13 0 3 203 0 1 39 0 1 60 0 4 14 0 1 5 35 10 256 10 14 8 0 9 122 3 0 34 1 0 11 chain 460629 chr9 141213431 + 85001098 85006587 L1PA6 6164 - 2 5513 8378 144 2 3 11 1 0 305 0 8 367 3 10 103 1 0 187 1 0 256 17 22 185 1 0 191 0 4 460 0 2 72 8 0 58 1 0 71 4 0 513 0 1 864 1 0 334 9 10 156 33 37 140 0 3 798 0 1 53 0 3 139 chain 96776 chr9 141213431 + 85028741 85030163 L1PB2 3958 + 2376 3838 37624 107 7 5 226 3 7 203 1 0 27 0 1 60 8 11 137 0 9 11 16 22 86 0 2 17 2 0 54 1 0 14 1 0 64 2 0 12 2 0 29 0 1 4 2 1 40 2 1 18 1 0 32 11 18 23 1 0 63 1 0 65 17 40 52 chain 66038 chr9 141213431 + 85035241 85035974 L1PA3long 6157 - 0 740 50077 20 0 2 141 0 4 171 0 1 401 chain 27199 chr9 141213431 + 85037047 85037343 AluYa5 310 - 14 309 95604 173 1 0 122 chain 5142 chr9 141213431 + 85046538 85046687 SVA_F 1814 - 722 1031 193644 25 51 211 35 0 8 6 6 0 5 2 0 19 chain 3408 chr9 141213431 + 85075021 85075190 L1MB5 1630 - 325 496 216945 6 1 0 35 109 112 18 chain 181173 chr9 141213431 + 85108194 85110710 L1PBa 3878 - 1146 3677 20883 245 0 3 76 0 3 149 22 13 162 1 2 300 1 11 145 1 0 6 7 0 25 6 11 29 0 1 102 0 2 250 2 1 198 24 31 110 0 1 77 22 23 67 4 8 157 1 0 249 1 0 4 6 7 16 30 27 8 1 0 12 chain 28338 chr9 141213431 + 85142950 85143343 L1PA8 5853 - 7 395 91804 86 1 0 15 2 1 43 25 23 19 0 2 49 2 0 44 1 0 106 chain 48745 chr9 141213431 + 85143344 85143936 L1PA8 5853 + 4856 5449 59914 153 0 2 210 0 1 4 2 1 122 1 0 100 chain 63544 chr9 141213431 + 85184338 85185056 L1PA5 6144 + 5426 6144 51223 718 chain 4976 chr9 141213431 + 85195329 85195385 MSTD 398 - 328 384 195405 56 chain 9321 chr9 141213431 + 85217920 85218126 THE1B 368 - 23 368 163954 33 1 2 7 2 0 60 63 203 40 chain 8657 chr9 141213431 + 85232532 85232699 Tigger3a 397 - 71 239 167442 31 48 49 88 chain 2829 chr9 141213431 + 85242315 85242346 L1MC1 2226 + 2153 2184 228226 31 chain 43746 chr9 141213431 + 85245166 85245717 LTR19B 566 + 0 566 64509 160 6 7 129 1 4 150 5 4 37 0 9 12 0 3 51 chain 22923 chr9 141213431 + 85299645 85299977 THE1C 375 - 39 375 116000 177 0 10 7 6 0 28 0 1 10 12 11 92 chain 39674 chr9 141213431 + 85316476 85316917 LTR7Y 441 - 0 441 69794 441 chain 284315 chr9 141213431 + 85317329 85320761 HERVH-int 3825 - 0 3825 14396 225 0 2 264 4 214 39 9 11 769 1 0 5 0 1 135 1 2 137 0 10 12 1 0 283 4 31 239 4 5 660 1 2 24 1 151 24 1 0 10 1 0 39 39 33 9 2 0 489 chain 38521 chr9 141213431 + 85320761 85321201 LTR7Y 441 - 0 441 71410 403 1 2 36 chain 17933 chr9 141213431 + 85335030 85335343 THE1B 368 - 34 368 133026 22 6 4 55 21 29 10 14 16 22 5 4 117 0 15 13 1 0 27 chain 25939 chr9 141213431 + 85353258 85353565 AluSp 311 + 4 311 100252 307 chain 5798 chr9 141213431 + 85354228 85354336 MER5A1 166 - 56 166 187165 64 0 1 4 25 26 15 chain 541568 chr9 141213431 + 85366757 85372779 L1PA3long 6157 - 0 6157 2579 857 1 0 336 1 0 606 0 4 3184 0 3 263 8 136 403 0 1 210 0 1 153 chain 25721 chr9 141213431 + 85381348 85381647 AluY 311 + 7 306 101212 116 1 0 9 0 1 173 chain 4503 chr9 141213431 + 85382373 85382434 L1MD2 1676 - 491 551 200744 46 1 0 14 chain 545735 chr9 141213431 + 85384286 85390289 L1PA2 6032 - 2 6030 1985 493 0 2 363 1 0 947 1 5 1075 0 2 88 2 1 479 0 3 335 0 12 237 0 3 165 1 0 24 0 5 1055 1 0 480 2 0 254 chain 19842 chr9 141213431 + 85421948 85422273 THE1C 375 + 27 355 127676 18 56 53 9 1 2 4 0 1 186 0 4 51 chain 43278 chr9 141213431 + 85425918 85426473 MER41A 554 + 0 554 65082 189 11 10 355 chain 68958 chr9 141213431 + 85426537 85427532 L1PA15 4387 + 3335 4327 48831 147 7 13 157 1 0 90 0 1 70 1 3 11 4 0 64 13 12 29 2 1 67 0 1 8 1 2 65 0 4 24 1 0 26 1 0 55 1 0 22 5 0 10 1 0 99 2 0 11 chain 15946 chr9 141213431 + 85434313 85434573 MER57E1 380 - 1 296 138535 97 32 30 35 2 0 26 2 41 66 chain 24511 chr9 141213431 + 85436026 85436326 AluSx3 311 + 4 302 107489 84 1 0 101 1 0 113 chain 8833 chr9 141213431 + 85450209 85450324 L1MD2 1676 + 1381 1495 166475 60 1 0 54 chain 9933 chr9 141213431 + 85473716 85473836 L1PA7 6471 - 5 125 160916 120 chain 87843 chr9 141213431 + 85487452 85488511 L1PA7 6471 - 3 1074 40429 36 1 10 285 0 1 378 7 8 40 0 1 312 chain 38144 chr9 141213431 + 85498647 85499098 LTR7 482 + 0 482 71921 263 1 32 187 chain 295022 chr9 141213431 + 85499100 85502702 HERVH-int 3825 + 0 3825 13707 532 66 0 38 2 1 9 1 0 23 0 51 44 2 1 10 21 2 18 2 1 49 1 0 36 0 1 269 7 18 578 8 35 204 1 3 92 0 10 1095 8 218 339 0 1 147 chain 5070 chr9 141213431 + 85499638 85499693 HERVH-int 3825 + 477 532 194433 55 chain 38984 chr9 141213431 + 85503955 85504404 LTR7 482 + 0 482 70761 263 1 32 87 0 2 98 chain 19679 chr9 141213431 + 85530078 85530447 THE1B 368 - 0 368 128171 123 55 60 16 1 0 46 18 17 22 16 12 72 chain 22249 chr9 141213431 + 85548677 85548938 L1PA5 6144 - 5 267 119122 92 0 1 169 chain 21979 chr9 141213431 + 85548938 85549185 L1PA5 6144 + 5625 5872 120320 247 chain 86177 chr9 141213431 + 85556018 85556992 L1PA5 6144 + 5160 6139 41086 138 0 4 508 0 1 328 chain 8813 chr9 141213431 + 85588798 85588938 HSMAR2 1300 + 1135 1279 166594 34 3 5 14 12 14 77 chain 24688 chr9 141213431 + 85600061 85600414 THE1A 353 - 0 353 106509 31 12 14 110 7 6 81 1 0 111 chain 12404 chr9 141213431 + 85654799 85655077 THE1B 368 + 0 306 150620 39 0 1 37 43 44 48 1 0 6 32 39 16 1 0 10 3 23 4 0 1 38 chain 4155 chr9 141213431 + 85660115 85660163 MLT2D 439 + 391 439 205166 48 chain 564220 chr9 141213431 + 85664454 85670486 L1HS 6032 - 0 6032 230 145 1 0 2754 0 1 3132 chain 39670 chr9 141213431 + 85687295 85687823 MLT2A2 560 - 0 560 69796 147 0 11 152 17 28 42 13 12 135 0 5 12 0 6 10 chain 7925 chr9 141213431 + 85693141 85693237 MER57F 435 + 0 96 171484 96 chain 134590 chr9 141213431 + 85707188 85708785 LTR12C 1709 - 0 1709 27098 481 0 4 106 3 1 5 1 0 275 1 0 15 0 119 93 1 2 65 0 1 259 9 0 283 chain 63247 chr9 141213431 + 85711556 85712251 L1PA4 6152 - 9 703 51340 177 1 0 517 chain 34440 chr9 141213431 + 85712257 85712642 L1PA4 6152 + 5079 5466 77008 221 0 2 164 chain 89852 chr9 141213431 + 85728997 85730071 MER11C 1089 + 0 1079 39703 224 7 9 79 1 2 277 8 9 397 0 1 81 chain 3123 chr9 141213431 + 85745342 85745405 L1MC1 2226 - 37 97 222498 5 1 0 30 6 5 14 1 0 6 chain 25497 chr9 141213431 + 85750115 85750407 L1PA5 6144 + 5837 6132 102236 201 0 3 91 chain 20304 chr9 141213431 + 85758115 85758404 L1PA16 3655 + 2712 3007 126226 80 0 2 91 1 5 32 6 5 37 5 6 37 chain 28321 chr9 141213431 + 85803984 85804348 THE1C 375 + 9 375 91864 171 0 1 6 1 0 16 0 3 144 1 0 25 chain 3275 chr9 141213431 + 85827105 85827143 MIR 256 - 146 184 219435 38 chain 10485 chr9 141213431 + 85831625 85831765 THE1B-int 1605 - 152 285 158315 6 7 0 127 chain 551954 chr9 141213431 + 85837856 85843864 L1PA2 6032 - 8 6020 1195 264 0 2 2024 0 2 599 0 1 2875 1 0 245 chain 76520 chr9 141213431 + 85868335 85869190 L1PA5 6144 + 5289 6141 45201 841 3 0 11 chain 180402 chr9 141213431 + 85869337 85871783 L1PA11 4918 + 2056 4508 20951 116 5 6 14 9 4 6 0 3 19 17 18 5 0 2 14 0 3 21 0 1 4 1 3 170 17 18 18 0 1 54 21 15 115 0 1 553 0 6 278 0 4 162 0 1 173 2 0 5 0 2 112 0 1 209 0 6 122 6 3 10 0 1 58 2 1 12 4 0 60 8 1 8 2 0 12 5 4 17 chain 126316 chr9 141213431 + 85886978 85888541 SVA_C 1631 + 0 1628 29004 9 28 0 16 0 15 13 0 6 148 3 1 298 74 0 346 4 0 32 0 137 16 3 0 542 0 25 6 7 0 18 chain 4148 chr9 141213431 + 85887503 85887552 SVA_C 1631 + 1045 1094 205271 49 chain 3276 chr9 141213431 + 85905106 85905143 MER3 215 - 6 43 219419 37 chain 21727 chr9 141213431 + 85965266 85965553 AluSp 311 + 10 297 121291 62 0 9 51 19 10 155 chain 19702 chr9 141213431 + 85969154 85969470 L1PA16 3655 + 3326 3619 128092 89 5 6 156 3 0 10 37 16 16 chain 115103 chr9 141213431 + 85971687 85973587 L1PB1 5432 - 18 1694 32756 22 1 0 22 1 0 24 61 45 19 4 3 17 9 6 19 1 0 15 3 2 22 30 42 9 1 0 9 1 0 23 5 0 10 203 7 129 3 0 170 1 2 25 1 4 139 4 1 117 31 32 109 10 0 183 1 4 95 0 1 23 2 0 326 chain 27772 chr9 141213431 + 85978468 85978767 AluYf4 310 - 10 309 93793 299 chain 11547 chr9 141213431 + 86013453 86013581 L1PA4 6152 + 6023 6151 154117 128 chain 48786 chr9 141213431 + 86033102 86033831 L1PB2 3958 + 3129 3838 59885 175 0 1 57 1 0 12 5 0 65 19 12 32 0 1 27 3 0 34 1 0 72 1 0 64 1 0 64 0 2 6 3 1 21 1 0 7 11 9 47 chain 3163 chr9 141213431 + 86041473 86041510 MER5A1 166 + 45 82 221699 37 chain 59233 chr9 141213431 + 86058064 86058779 L1PA6 6164 - 3 721 53259 25 0 3 116 1 0 6 8 9 559 chain 12513 chr9 141213431 + 86065272 86065406 L1HS 6032 - 0 134 150189 134 chain 28300 chr9 141213431 + 86070205 86070562 THE1A 353 + 0 353 91946 109 2 1 32 1 0 60 2 0 151 chain 26854 chr9 141213431 + 86078195 86078569 THE1C 375 - 0 375 96793 25 1 0 134 23 26 9 0 1 58 3 0 102 0 1 19 chain 535313 chr9 141213431 + 86128583 86135065 L1PA7 6471 + 3 6465 3547 407 0 2 433 1 0 5 0 1 68 1 2 475 5 4 88 3 0 328 0 1 30 1 2 301 0 1 62 1 0 302 1 0 4 0 2 110 3 1 634 0 2 235 1 0 324 1 0 9 23 4 6 0 1 158 0 4 318 3 0 101 7 9 542 1 0 40 2 1 587 1 2 5 1 0 314 6 5 526 2 0 6 chain 4287 chr9 141213431 + 86141165 86141217 MER45A 178 + 96 148 203391 52 chain 9468 chr9 141213431 + 86144121 86144256 L1MB7 1623 + 612 745 163226 21 10 8 104 chain 14944 chr9 141213431 + 86150441 86150649 MER30 238 + 0 238 141488 17 1 19 70 4 19 74 3 0 39 chain 3371 chr9 141213431 + 86163838 86163880 HY3 101 + 22 64 217642 42 chain 237533 chr9 141213431 + 86164819 86168251 L1PA14 3548 - 92 3465 16906 40 2 1 19 1 0 3 1 0 15 4 2 34 19 14 107 1 0 68 0 4 12 1 0 6 2 0 17 4 0 107 23 19 35 2 0 14 21 20 225 49 17 140 1 0 251 0 4 6 3 0 109 0 1 385 0 1 231 3 5 29 9 12 13 3 2 178 6 5 442 0 7 118 9 0 76 0 1 26 0 1 149 13 1 14 3 5 135 1 11 16 10 8 27 10 8 22 2 1 20 1 0 7 1 2 60 5 1 57 2 0 7 chain 27729 chr9 141213431 + 86180969 86181323 THE1A 353 - 0 353 93940 243 5 4 106 chain 131556 chr9 141213431 + 86181323 86182905 THE1A-int 1579 - 0 1579 27735 210 0 1 675 14 8 229 1 2 133 0 1 320 chain 26883 chr9 141213431 + 86182905 86183259 THE1A 353 - 0 353 96692 242 6 5 106 chain 90092 chr9 141213431 + 86203986 86204987 L1PA3long 6157 - 432 1433 39618 1001 chain 30292 chr9 141213431 + 86221600 86222180 L1PB 1623 + 1028 1575 83954 133 12 17 126 6 1 114 167 134 22 chain 29137 chr9 141213431 + 86222562 86222916 THE1A 353 + 0 353 88378 110 2 1 242 chain 56325 chr9 141213431 + 86222917 86223972 THE1A-int 1579 + 1 761 54951 106 0 3 306 2 1 8 304 0 48 11 12 143 7 0 11 9 17 55 1 7 9 1 0 34 chain 7331 chr9 141213431 + 86223972 86224075 L1PB1 5432 + 5187 5281 175218 32 1 0 17 1 0 13 7 0 32 chain 110699 chr9 141213431 + 86227387 86228757 L1PA8 5853 + 4492 5853 34030 126 0 2 17 1 0 373 6 4 522 0 1 27 1 0 44 3 1 69 18 14 50 1 0 18 2 1 92 chain 24880 chr9 141213431 + 86237017 86237287 AluYb8 318 + 34 302 105461 98 2 0 170 chain 14717 chr9 141213431 + 86247373 86247562 MER30 238 - 0 193 142211 125 4 5 14 0 3 46 chain 25223 chr9 141213431 + 86247974 86248274 AluY 311 + 2 303 103615 125 1 2 174 chain 3916 chr9 141213431 + 86254357 86254399 MER4E1 777 + 662 704 208613 42 chain 33386 chr9 141213431 + 86269522 86269960 MER4A1 472 + 0 461 78593 21 4 5 9 1 0 17 0 1 173 5 27 208 chain 5590 chr9 141213431 + 86301729 86301880 Tigger4a 237 + 79 210 189178 26 8 0 10 28 33 23 19 2 37 chain 4356 chr9 141213431 + 86314983 86315099 MER105 203 + 62 181 202490 34 51 54 31 chain 102529 chr9 141213431 + 86327255 86328520 HSMAR1 1287 + 11 1287 36124 105 8 9 16 1 7 546 3 6 513 0 1 73 chain 60916 chr9 141213431 + 86343657 86344307 SVA_D 2077 + 1425 2075 52379 650 chain 24218 chr9 141213431 + 86370714 86371011 AluSq10 312 - 7 304 109115 297 chain 192262 chr9 141213431 + 86375013 86377801 L1MA2 4263 + 475 3251 19845 8 1 0 51 11 36 4 1 0 90 0 3 376 0 1 191 1 3 156 1 4 8 0 1 34 38 0 13 3 25 27 59 0 18 71 80 130 0 1 14 8 15 79 5 8 33 0 1 85 1 0 58 1 9 345 0 1 166 1 0 4 0 4 84 9 6 8 10 0 51 1 7 194 1 3 32 4 6 89 6 7 84 1 0 4 0 1 118 chain 7657 chr9 141213431 + 86399350 86399446 MSTD 398 + 259 355 173177 96 chain 176147 chr9 141213431 + 86418137 86420396 SVA_D 2077 + 8 2077 21340 11 15 0 9 0 11 864 2 0 15 3 1 23 85 0 5 4 0 89 0 2 48 1 0 171 0 1 4 73 51 36 1 0 39 36 2 11 4 0 12 37 0 31 0 1 341 0 2 289 chain 6384 chr9 141213431 + 86419079 86419164 SVA_D 2077 + 1256 1341 81333 85 chain 3386 chr9 141213431 + 86419486 86419559 SVA_D 2077 + 1034 1059 104314 2 48 0 23 chain 2476 chr9 141213431 + 86419488 86419518 SVA_D 2077 + 1214 1244 163523 30 chain 1438 chr9 141213431 + 86419640 86419671 SVA_D 2077 + 1093 1124 104314 31 chain 1716 chr9 141213431 + 86419698 86419735 SVA_D 2077 + 1151 1188 104314 37 chain 47015 chr9 141213431 + 86438796 86439367 L1PA6 6164 - 15 605 61192 10 0 1 119 10 27 165 0 1 267 chain 8429 chr9 141213431 + 86442235 86442354 L1PA16 3655 + 3403 3520 168691 60 1 0 26 1 0 31 chain 42669 chr9 141213431 + 86446939 86447407 L1PA3long 6157 - 0 471 65818 171 0 2 85 0 1 212 chain 263179 chr9 141213431 + 86459330 86462475 HERVL-int 5654 + 0 5654 15530 245 10 12 92 0 2495 366 1 0 291 0 4 44 0 2 592 0 11 395 16 9 662 1 0 129 0 4 301 chain 28512 chr9 141213431 + 86462475 86462866 MLT2A1 477 + 0 393 91136 26 0 5 111 4 7 18 2 6 137 0 1 12 1 0 62 10 0 8 chain 24929 chr9 141213431 + 86467080 86467383 AluY 311 + 2 298 105165 86 1 0 30 5 0 15 1 0 165 chain 350271 chr9 141213431 + 86476112 86479997 L1PA5 6144 - 16 3909 11594 412 0 1 414 0 4 432 0 1 1657 0 3 665 1 0 304 chain 3326 chr9 141213431 + 86487412 86487449 MER5C 305 + 103 140 218458 37 chain 21845 chr9 141213431 + 86488705 86488977 AluY 311 + 23 293 120832 85 3 1 184 chain 19649 chr9 141213431 + 86492879 86493104 AluY 311 + 82 310 128252 50 0 1 134 0 2 41 chain 17223 chr9 141213431 + 86531906 86532096 L1PA5 6144 - 7 197 134990 190 chain 137304 chr9 141213431 + 86562427 86564023 SVA_B 1603 + 5 1603 26589 16 9 0 6 1 25 826 4 0 21 1 0 6 0 1 15 4 0 15 2 0 27 4 0 569 1 2 69 chain 22394 chr9 141213431 + 86578776 86579060 AluSq2 311 + 10 309 118516 46 0 15 62 0 1 126 0 1 24 2 0 24 chain 23625 chr9 141213431 + 86597296 86597611 AluY 311 + 0 293 112435 126 4 0 148 25 7 12 chain 21808 chr9 141213431 + 86605732 86605993 AluSp 311 - 22 283 120992 261 chain 5234 chr9 141213431 + 86607858 86607919 HY3 101 + 12 73 192684 61 chain 24168 chr9 141213431 + 86612023 86612304 AluSp 311 - 9 290 109386 281 chain 8204 chr9 141213431 + 86621319 86621458 MER2 342 - 163 307 169931 70 1 0 26 26 32 16 chain 63751 chr9 141213431 + 86625283 86626252 HSMAR1 1287 - 1 1281 51122 20 12 17 172 4 2 431 105 406 70 4 9 34 0 1 56 0 1 61 chain 23683 chr9 141213431 + 86627245 86627537 AluY 311 + 0 310 112135 44 0 16 66 0 1 85 1 2 96 chain 4047 chr9 141213431 + 86629092 86629143 LTR37A 408 - 280 331 206683 51 chain 517443 chr9 141213431 + 86651085 86659438 L1PA7 6471 - 1 6468 5431 146 46 6 12 1 33 464 322 0 188 1 0 148 0 10 165 9 10 22 0 48 233 1 0 420 1 2 81 0 4 554 0 7 81 0 1 183 0 2 153 1 0 11 7 8 379 2 1 282 1 0 108 0 3 59 21 5 257 2 1 355 1632 3 34 0 1 231 1 0 203 0 1 204 0 1 6 5 4 61 10 11 4 1 0 546 0 17 298 1 0 400 chain 22352 chr9 141213431 + 86656132 86656410 MER11C 1089 + 0 376 118695 55 1 92 28 0 4 80 0 3 114 chain 14510 chr9 141213431 + 86663029 86663185 L1PA4 6152 + 5995 6151 142852 156 chain 4035 chr9 141213431 + 86664142 86664186 MLT1B 390 + 305 349 206847 44 chain 4725 chr9 141213431 + 86667787 86667852 MSTC 436 + 371 436 198217 21 1 0 4 0 1 39 chain 17390 chr9 141213431 + 86675218 86675522 MLT1B 390 + 52 360 134535 44 4 6 65 44 47 5 2 0 48 1 2 91 chain 9959 chr9 141213431 + 86677752 86677952 L1PB1 5432 + 5221 5404 160782 16 1 0 44 1 0 15 2 0 6 16 6 19 2 0 5 1 0 14 10 8 16 1 0 22 0 3 9 chain 2320 chr9 141213431 + 86689575 86689601 L1MEf 1413 - 893 919 235121 26 chain 50687 chr9 141213431 + 86701917 86702716 L1PA14 3548 - 372 1136 58512 39 1 0 6 2 0 17 9 6 103 2 0 5 2 0 47 2 0 14 10 8 11 13 7 17 5 9 12 5 6 73 0 3 9 0 1 88 2 0 5 29 7 50 0 2 96 1 0 7 1 0 116 chain 20504 chr9 141213431 + 86741813 86742050 AluSc 308 + 27 265 125615 229 0 1 8 chain 76801 chr9 141213431 + 86746036 86746896 L1PA4 6152 - 9 868 45083 849 1 0 10 chain 36287 chr9 141213431 + 86749579 86750030 MLT2A2 560 + 2 560 74520 181 1 0 108 0 98 13 0 11 6 1 0 141 chain 16401 chr9 141213431 + 86779802 86780099 MSTA 426 + 99 405 137206 35 12 19 61 30 30 53 13 12 11 1 4 81 chain 28622 chr9 141213431 + 86782362 86782662 AluYa5 310 - 10 310 90646 300 chain 76843 chr9 141213431 + 86793061 86793954 L1PA7 6471 - 5 898 45061 7 3 0 69 0 1 581 1 0 184 0 3 48 chain 39106 chr9 141213431 + 86797942 86798384 L1PA6 6164 + 5719 6161 70593 442 chain 52716 chr9 141213431 + 86813736 86814755 MSTA-int 1630 - 14 751 57178 86 4 0 13 2 8 250 7 6 156 0 30 84 326 13 91 chain 9294 chr9 141213431 + 86819521 86819777 L1MA4 2864 + 2594 2809 164085 76 4 1 22 87 51 21 19 17 27 chain 6773 chr9 141213431 + 86838993 86839073 LTR39 781 - 172 252 179155 80 chain 5409 chr9 141213431 + 86852040 86852162 L1MC2 1988 + 1621 1745 190899 44 42 44 36 chain 3897 chr9 141213431 + 86861414 86861457 tRNA-Gln-CAG 43 + 0 43 208900 43 chain 182063 chr9 141213431 + 86861668 86863757 L1PA6 6164 + 4045 6151 20777 539 0 11 57 0 5 234 2 1 573 7 8 358 0 1 319 chain 25493 chr9 141213431 + 86882420 86882711 AluSp 311 - 11 301 102255 168 1 0 122 chain 16505 chr9 141213431 + 86882880 86883116 MER2 342 - 0 255 136900 58 12 24 45 0 7 121 chain 3049 chr9 141213431 + 86915898 86915969 L1MA3 4352 + 4288 4352 224005 29 2 1 10 13 7 17 chain 38426 chr9 141213431 + 86947871 86948378 PRIMA4_LTR 623 - 0 623 71545 68 7 9 98 0 80 98 0 10 33 0 1 23 3 26 177 chain 47584 chr9 141213431 + 86959001 86959953 MER4E1 777 + 0 777 60777 25 2 0 64 311 0 53 0 2 74 0 141 8 0 1 68 0 1 103 2 0 5 10 5 227 chain 22772 chr9 141213431 + 86963932 86964242 LTR7B 505 - 14 505 116718 37 14 13 79 1 0 33 0 170 44 0 10 13 0 3 89 chain 9018 chr9 141213431 + 86964900 86965065 Tigger3 1187 - 127 251 165508 13 30 0 69 1 0 12 10 0 30 chain 16171 chr9 141213431 + 86980280 86980631 L1MA1 4479 - 307 681 137836 13 6 2 6 1 0 9 1 0 11 26 25 12 1 26 13 7 6 24 15 13 61 7 3 49 0 13 9 0 2 30 2 0 19 1 0 28 chain 33826 chr9 141213431 + 86981024 86981889 L1M1 2793 - 1545 2300 77898 68 0 1 58 9 13 41 4 8 49 8 7 101 1 0 8 3 1 54 1 0 8 2 0 29 1 0 30 2 0 6 4 1 13 8 6 6 2 0 11 52 39 29 158 82 8 1 0 10 3 0 9 2 0 12 1 0 7 22 18 4 1 0 12 1 0 6 chain 10044 chr9 141213431 + 86986384 86986538 L1PA13 3608 - 227 379 160355 46 1 0 37 6 7 17 2 0 45 chain 14150 chr9 141213431 + 86997382 86997536 L1PA2 6032 - 4 158 144037 154 chain 23412 chr9 141213431 + 87017887 87018242 THE1C 375 - 0 375 113585 96 0 1 51 0 1 4 17 18 19 0 8 44 0 3 5 8 5 11 5 14 95 chain 11063 chr9 141213431 + 87023864 87024098 LTR12C 1709 + 771 1211 155953 66 76 75 65 0 207 27 chain 54147 chr9 141213431 + 87035462 87036070 L1PA3long 6157 - 0 611 56265 331 0 3 277 chain 209660 chr9 141213431 + 87071901 87074367 L1PA5 6144 - 9 2424 18513 479 8 7 635 1 0 9 2 1 73 0 1 17 0 1 561 0 4 89 0 3 295 33 0 212 24 0 28 chain 26893 chr9 141213431 + 87120814 87121237 MSTA 426 - 0 426 96650 76 0 1 97 2 1 22 3 2 11 4 0 13 2 4 42 5 9 18 1 0 26 7 9 16 7 8 71 chain 51292 chr9 141213431 + 87137123 87137755 PABL_A 660 + 0 660 58117 74 0 16 174 0 2 174 5 15 205 chain 25954 chr9 141213431 + 87139056 87139339 L1PA4 6152 - 11 294 100188 283 chain 103287 chr9 141213431 + 87139339 87140668 L1MA3 4352 - 954 2291 35927 617 1 0 403 0 4 9 0 2 48 0 2 86 0 1 165 chain 156499 chr9 141213431 + 87140675 87143144 SVA_A 1864 - 0 1849 23797 655 3 1 63 1 0 47 341 0 57 0 1 147 5 7 36 76 0 50 3 0 37 1 0 101 40 0 170 159 0 477 chain 1466 chr9 141213431 + 87141446 87141472 SVA_A 1864 - 951 977 137659 26 chain 10694 chr9 141213431 + 87141524 87141785 SVA_A 1864 - 766 987 62261 102 39 0 103 8 7 9 chain 4535 chr9 141213431 + 87142030 87142106 SVA_A 1864 - 1164 1238 78821 47 2 0 27 chain 3186 chr9 141213431 + 87142298 87142336 SVA_A 1864 - 905 943 154346 38 chain 5449 chr9 141213431 + 87142508 87142641 SVA_A 1864 - 1256 1383 62261 60 6 0 17 0 3 22 10 7 18 chain 661 chr9 141213431 + 87142641 87142667 SVA_A 1864 - 1006 1032 76680 26 chain 514696 chr9 141213431 + 87145040 87151218 L1PA5 6144 - 1 5864 5703 348 26 11 495 1 2 282 2 1 561 0 1 248 0 2 2714 305 0 42 0 1 1115 0 1 39 chain 19336 chr9 141213431 + 87222392 87222688 THE1C 375 - 76 375 129124 32 0 9 14 0 5 6 39 29 19 1 0 185 chain 289604 chr9 141213431 + 87240889 87244210 L1PA5 6144 + 2803 6144 14046 360 0 1 77 0 9 138 1 2 928 0 27 512 3 0 40 41 21 373 0 4 462 0 1 386 chain 12770 chr9 141213431 + 87245389 87245543 L1PA7 6471 - 4 159 149175 143 0 1 11 chain 92087 chr9 141213431 + 87259883 87260955 L1PA5 6144 - 0 1083 38943 11 3 1 345 0 9 477 0 4 236 chain 3645 chr9 141213431 + 87279407 87279462 L1ME1 1623 - 476 533 212881 26 1 3 28 chain 103765 chr9 141213431 + 87298102 87299441 L1PA8 5853 - 0 1329 35781 92 2 1 16 1 0 56 1 0 9 1 0 20 0 1 49 3 1 44 1 0 206 0 1 208 0 2 37 16 5 87 2 1 7 0 4 228 5 6 248 chain 5311 chr9 141213431 + 87304560 87304778 L1MB3 1562 - 7 193 191911 19 86 85 13 43 13 4 1 0 52 chain 23804 chr9 141213431 + 87363875 87364155 AluSp 311 + 10 294 111454 29 0 4 251 chain 7999 chr9 141213431 + 87479223 87479415 L1PB1 5432 + 5258 5430 171072 22 1 0 17 2 0 5 1 0 9 9 0 15 17 15 5 2 0 27 0 2 16 1 0 13 1 0 17 2 0 5 1 0 4 chain 5240 chr9 141213431 + 87623258 87623333 MADE1 96 + 1 93 192618 25 0 1 16 1 17 33 chain 114408 chr9 141213431 + 87683518 87685091 THE1B-int 1605 + 0 1600 32968 24 11 10 217 2 1 17 10 9 129 0 5 5 1 0 15 0 25 203 83 86 388 5 2 43 1 2 419 chain 543116 chr9 141213431 + 87686586 87692593 L1PA3long 6157 - 5 6148 2325 1790 0 2 413 0 1 1462 0 1 1094 0 1 63 0 2 419 0 128 623 0 1 143 chain 25265 chr9 141213431 + 87717445 87717717 AluYa5 310 + 36 309 103394 126 0 1 146 chain 83817 chr9 141213431 + 87746708 87747696 L1PA6 6164 + 5162 6151 41979 150 0 4 278 3 0 557 chain 110789 chr9 141213431 + 87775837 87777478 L1PA7 6471 - 17 1491 34007 23 2 11 178 290 121 22 9 0 485 2 0 373 0 1 202 1 4 54 chain 101164 chr9 141213431 + 87779885 87780974 L1PA2 6032 + 4944 6032 36474 324 1 0 764 chain 5907 chr9 141213431 + 87809671 87809774 L1MA6 2487 - 216 304 186110 34 25 10 44 chain 42753 chr9 141213431 + 87810209 87810673 L1PA2 6032 - 468 932 65716 464 chain 44081 chr9 141213431 + 87810673 87811141 L1PA2 6032 + 5562 6030 64124 468 chain 4973 chr9 141213431 + 87817627 87817685 MER53 195 - 137 195 195437 58 chain 12962 chr9 141213431 + 87850664 87850812 AluSc5 308 - 13 161 148386 148 chain 10982 chr9 141213431 + 87853967 87854102 MLT1A1 405 - 0 135 156265 135 chain 539210 chr9 141213431 + 87867085 87873521 L1PA7 6471 - 5 6471 2947 51 0 1 283 1 0 169 4 8 59 1 0 585 0 5 498 0 3 130 0 8 572 0 1 570 1 0 882 1 2 676 0 2 565 0 3 63 0 1 248 0 1 673 1 0 90 0 1 293 0 3 20 chain 15341 chr9 141213431 + 87904430 87904736 LTR12C 1709 + 932 1203 140366 176 41 10 15 56 52 18 chain 1426 chr9 141213431 + 87904770 87904805 LTR12C 1709 + 874 909 155576 35 chain 23880 chr9 141213431 + 87930496 87930870 THE1C 375 + 0 355 111028 44 0 1 34 64 45 226 1 0 5 chain 47925 chr9 141213431 + 87934571 87935199 PABL_A 660 - 24 656 60540 227 8 0 65 0 1 62 5 6 42 1 2 138 1 10 79 chain 3316 chr9 141213431 + 87965559 87965600 LTR37B 484 + 368 409 218664 41 chain 267943 chr9 141213431 + 87968795 87972937 L1PB2 3958 - 120 3892 15297 6 0 2 50 6 5 26 15 13 57 1 0 44 7 4 14 1 0 37 6 7 20 362 0 8 1 0 94 6 0 11 3 1 61 0 3 12 1 0 56 2 0 55 14 19 269 1 0 38 0 3 23 21 25 159 0 1 26 1 4 35 0 1 4 2 1 68 17 34 383 25 15 115 1 0 258 19 27 117 0 1 35 5 0 449 15 20 197 0 1 448 0 3 181 5 0 57 11 8 49 1 0 3 5 0 35 2 0 32 36 24 18 chain 3345 chr9 141213431 + 87978984 87979026 MADE1 96 - 53 96 218134 16 0 1 26 chain 22619 chr9 141213431 + 87980044 87980380 L1PA8A 6298 - 8 327 117494 97 4 3 13 16 7 66 17 9 32 0 1 91 chain 467465 chr9 141213431 + 87985518 87991464 HERVL-int 5654 - 6 5651 8132 741 8 11 273 10 0 885 1 2 235 0 1 556 0 1 1109 6 1 8 0 5 47 1 4 717 0 1 11 0 2 509 305 0 110 1 3 413 chain 2880 chr9 141213431 + 88024303 88024351 MER8 282 - 26 73 227360 18 6 5 24 chain 5347 chr9 141213431 + 88037480 88037574 MLT1H 522 + 61 165 191572 51 4 5 11 6 15 22 chain 529229 chr9 141213431 + 88048011 88054470 L1PA7 6471 + 0 6468 4272 97 0 1 305 0 2 65 24 0 386 1 2 471 0 1 63 0 3 345 0 1 95 0 1 82 0 7 122 2 0 598 0 1 316 0 4 241 0 1 54 7 13 223 1 0 49 0 4 16 0 3 194 0 1 19 0 3 46 0 1 692 0 1 70 0 9 26 0 1 605 0 1 275 32 13 219 1 2 200 5 6 358 1 0 6 5 6 142 chain 394462 chr9 141213431 + 88061299 88066715 L1PB1 5432 - 33 5373 10304 8 1 0 21 1 0 24 2 0 14 13 10 11 28 16 11 4 3 44 1 0 16 2 1 53 2 0 6 20 15 12 1 0 20 1 0 7 10 17 292 0 1 175 5 6 70 1 0 437 0 1 151 6 7 108 0 8 95 90 18 231 0 4 179 3 1 27 0 1 339 0 4 85 9 10 315 1 2 26 14 11 601 0 1 130 1 2 131 19 20 153 52 41 5 2 0 7 1 0 114 21 20 222 0 6 279 0 5 141 1 0 207 6 5 245 7 13 79 chain 4277 chr9 141213431 + 88073153 88073201 MLT1C 463 + 57 105 203502 48 chain 35270 chr9 141213431 + 88073234 88073676 LTR7 482 + 0 470 75831 16 5 0 245 0 31 127 12 14 37 chain 306527 chr9 141213431 + 88073690 88077598 HERVH-int 3825 + 0 3823 13152 532 66 0 38 1 0 10 1 0 24 112 0 15 1 0 12 3 0 25 1 0 4 42 0 38 84 1 28 2 0 51 0 1 444 15 0 462 4 31 290 0 4 1110 8 218 485 chain 2674 chr9 141213431 + 88074255 88074283 HERVH-int 3825 + 504 532 230483 28 chain 4997 chr9 141213431 + 88074363 88074474 HERVH-int 3825 + 618 683 180685 11 24 0 28 22 0 26 chain 38554 chr9 141213431 + 88081410 88081859 LTR7 482 + 0 482 71361 264 0 31 124 12 14 49 chain 4227 chr9 141213431 + 88114912 88114964 MSTB 430 - 48 100 204204 52 chain 127733 chr9 141213431 + 88187986 88189399 SVA_D 2077 + 6 2077 28636 27 4 0 821 0 661 515 0 1 46 chain 4924 chr9 141213431 + 88216750 88216877 L1M2 1805 + 200 350 195992 12 16 10 38 27 56 34 chain 25058 chr9 141213431 + 88263450 88263734 AluY 311 + 5 290 104516 121 0 1 163 chain 19489 chr9 141213431 + 88271892 88272109 L1PA2 6032 + 5816 6032 128687 196 1 0 20 chain 3873 chr9 141213431 + 88300434 88300483 L1MEf 1413 + 946 998 209256 39 0 3 10 chain 8187 chr9 141213431 + 88311642 88311778 Charlie1a 1436 + 803 948 170037 35 15 23 37 4 5 45 chain 19802 chr9 141213431 + 88322744 88322983 L1PA7 6471 + 6226 6465 127808 239 chain 500802 chr9 141213431 + 88332599 88338733 L1PA6 6164 - 2 6164 6795 70 0 1 420 6 9 29 5 10 81 3 5 488 0 1 358 9 12 308 0 6 1120 0 4 11 2 1 54 4 0 246 3 1 344 0 4 254 8 1 431 0 1 716 1 0 61 3 4 48 1 0 102 1 0 33 0 4 115 2 19 203 21 20 13 36 38 67 23 4 34 15 16 227 0 10 158 chain 3326 chr9 141213431 + 88366331 88366368 MER5C 305 - 165 202 218459 37 chain 350111 chr9 141213431 + 88373791 88377680 L1PA5 6144 + 2235 6128 11602 969 0 3 987 0 2 209 5 0 892 0 4 827 chain 28848 chr9 141213431 + 88390524 88390892 MLT2A1 477 - 92 467 89680 62 1 0 12 0 1 137 2 6 21 1 4 132 chain 264334 chr9 141213431 + 88390902 88394047 HERVL-int 5654 - 0 5654 15465 302 0 4 115 7 6 669 16 9 395 0 11 232 1 0 360 0 2 44 0 4 656 0 2495 93 8 10 247 chain 6112 chr9 141213431 + 88394047 88394126 MLT2A1 477 - 0 79 184331 79 chain 8981 chr9 141213431 + 88410606 88410725 L1PA16 3655 - 135 252 165706 30 1 0 27 1 0 60 chain 10924 chr9 141213431 + 88412540 88412713 MER30 238 - 0 202 156513 28 10 10 42 0 6 24 4 0 6 2 29 57 chain 47657 chr9 141213431 + 88413782 88414353 L1PA6 6164 - 15 605 60729 36 5 6 87 0 17 176 0 1 267 chain 98674 chr9 141213431 + 88426222 88427286 L1PA2 6032 - 14 1078 37105 1064 chain 32048 chr9 141213431 + 88427286 88427629 L1PA2 6032 + 4624 4967 80465 343 chain 35992 chr9 141213431 + 88467937 88468403 L1PB1 5432 + 4039 4499 74908 172 1 0 202 1 0 8 0 1 26 5 0 51 chain 21157 chr9 141213431 + 88470645 88471021 THE1D 372 + 2 372 123349 11 0 2 31 9 0 115 1 0 7 57 56 44 4 5 67 1 0 9 0 3 20 chain 24149 chr9 141213431 + 88471131 88471420 AluSq2 311 + 11 299 109478 123 1 0 165 chain 67961 chr9 141213431 + 88476670 88477459 L1PA5 6144 - 0 783 49260 9 6 0 774 chain 20980 chr9 141213431 + 88479083 88479479 L1PA16 3655 - 3049 3459 123991 175 1 5 11 3 7 25 96 102 85 chain 4361 chr9 141213431 + 88483113 88483161 L1PA16 3655 + 3424 3472 202438 48 chain 31792 chr9 141213431 + 88499008 88499425 HERVH-int 3825 + 2970 3390 81185 46 1 0 70 0 3 264 13 14 23 chain 8644 chr9 141213431 + 88506103 88506646 Tigger3a 397 - 74 250 167520 57 369 0 37 6 7 23 26 27 25 chain 3033 chr9 141213431 + 88534890 88534927 MER5B 177 - 140 177 224327 37 chain 11413 chr9 141213431 + 88537539 88537683 MSTB 430 - 280 423 154623 38 1 0 105 chain 22163 chr9 141213431 + 88550912 88551180 AluSp 311 + 43 311 119529 268 chain 21315 chr9 141213431 + 88552095 88552445 MER61F 604 + 62 420 122822 35 15 13 4 1 0 17 14 12 85 11 20 100 1 0 37 0 5 30 chain 22113 chr9 141213431 + 88582440 88582726 AluY 311 + 0 294 119729 48 1 0 9 1 7 68 0 1 10 3 0 7 0 3 122 0 2 17 chain 3206 chr9 141213431 + 88590242 88590278 U6 107 - 71 107 220830 36 chain 49871 chr9 141213431 + 88593980 88594566 LTR10C 591 - 0 591 59103 79 0 2 139 1 0 232 0 4 135 chain 11804 chr9 141213431 + 88598578 88598725 L1PA7 6471 + 6307 6455 153015 70 0 1 77 chain 315192 chr9 141213431 + 88662799 88666457 L1PA6 6164 - 3 3680 12799 118 1 0 50 1 7 515 1 0 156 1 0 71 0 1 228 0 1 123 0 4 467 0 1 47 0 4 398 0 2 63 1 0 325 0 3 31 3 4 134 1 0 218 0 1 705 chain 462315 chr9 141213431 + 88700396 88706131 L1PA7 6471 - 3 6471 8311 9 2 0 106 7 6 13 1 0 176 1 0 19 0 6 143 0 3 159 0 2 198 0 5 16 1 5 210 7 17 354 0 1 340 0 4 14 0 3 172 0 5 313 9 11 668 38 725 57 5 14 31 0 5 19 25 0 14 1 2 9 0 1 91 0 2 353 0 4 201 0 2 89 0 1 117 1 0 257 0 3 229 0 6 23 16 20 56 0 4 122 2 1 225 0 6 116 4 8 68 1 0 195 21 2 206 0 1 205 chain 4267 chr9 141213431 + 88711170 88711222 MER58B 340 + 167 219 203667 52 chain 11250 chr9 141213431 + 88718388 88718533 Tigger2 2703 + 2496 2646 155223 71 0 4 70 0 1 4 chain 5961 chr9 141213431 + 88729542 88729651 LTR40b 463 + 355 463 185593 46 26 25 37 chain 55710 chr9 141213431 + 88730169 88730801 L1PA5 6144 + 5505 6142 55297 458 0 5 174 chain 9886 chr9 141213431 + 88732756 88732873 MER87B 500 + 9 126 161154 117 chain 23423 chr9 141213431 + 88734749 88735044 AluSc8 310 + 7 305 113513 123 12 15 160 chain 3143 chr9 141213431 + 88740427 88740511 L1ME1 1623 + 1500 1570 222092 22 15 4 15 11 8 21 chain 29291 chr9 141213431 + 88755045 88755400 MER4E1 777 + 5 362 87619 267 0 2 88 chain 1247 chr9 141213431 + 88758773 88758919 LTR8 732 - 0 146 138597 146 chain 34061 chr9 141213431 + 88759666 88760101 MER41A 554 + 13 441 77525 276 14 0 8 0 7 137 chain 940 chr9 141213431 + 88760527 88760637 LTR8 732 - 612 732 138597 81 10 20 19 chain 67691 chr9 141213431 + 88762344 88763213 LTR12 884 - 0 855 49369 505 8 6 151 0 25 28 37 0 140 chain 12727 chr9 141213431 + 88763213 88763361 LTR12D 1347 - 763 942 149344 17 0 31 131 chain 469181 chr9 141213431 + 88765975 88771705 HERV9-int 5642 - 0 5642 8065 17 12 6 16 34 11 7 1 0 56 5 4 26 4 2 36 6 4 231 1 0 277 0 14 16 7 8 1051 0 5 37 1 0 366 0 1 318 0 3 722 0 2 552 0 2 419 0 1 4 1 0 286 14 15 16 3 4 15 80 0 301 1 0 791 chain 3225 chr9 141213431 + 88771734 88771769 LTR12_ 688 - 0 35 220509 35 chain 547716 chr9 141213431 + 88772003 88778024 L1PA2 6032 + 1 6032 1740 71 0 1 183 1 0 3448 0 1 102 0 1 1368 0 4 552 0 1 139 6 9 151 chain 43058 chr9 141213431 + 88778833 88779700 MER41A 554 - 7 547 65347 76 0 5 64 4 5 210 0 1 9 334 0 170 chain 30238 chr9 141213431 + 88781018 88781414 MER51B 395 + 0 388 84090 39 13 0 90 0 2 114 1 0 88 1 5 50 chain 4121 chr9 141213431 + 88785730 88785776 L1MB7 1623 - 201 247 205638 46 chain 29238 chr9 141213431 + 88803206 88803520 AluYb8 318 - 5 318 87865 181 1 0 132 chain 168569 chr9 141213431 + 88803526 88806218 L1PBa 3878 + 1249 3457 22213 197 0 2 21 0 2 137 20 12 39 315 0 16 2 0 66 0 7 70 0 1 4 1 0 205 0 3 422 4 5 6 1 0 171 10 1 30 165 0 48 7 0 76 1 6 244 2 1 16 9 8 6 0 1 75 0 4 71 4 1 190 0 3 41 chain 6604 chr9 141213431 + 88815294 88815382 MSTD 398 + 311 398 180420 16 1 0 71 chain 133544 chr9 141213431 + 88819511 88821033 L1P1 4361 + 2803 4319 27309 362 3 0 12 1 0 973 1 0 155 1 0 14 chain 10101 chr9 141213431 + 88871956 88872128 LTR23 429 + 233 405 160084 46 2 0 16 10 13 31 10 9 57 chain 11744 chr9 141213431 + 88873339 88873561 7SK 245 - 8 245 153279 53 68 83 101 chain 19453 chr9 141213431 + 88878390 88878612 L1PA5 6144 - 6 241 128809 141 0 13 81 chain 171590 chr9 141213431 + 88884119 88886002 L1PA3long 6157 + 4259 6142 21871 412 4 3 1297 0 1 170 chain 130007 chr9 141213431 + 88926503 88928041 SVA_D 2077 + 3 2059 28086 7 1 0 9 5 0 16 3 1 15 5 13 661 12 15 21 3 0 117 0 535 373 1 3 202 23 4 64 chain 25997 chr9 141213431 + 88975109 88975480 LTR24C 604 + 18 394 100030 28 0 1 224 8 9 17 0 1 26 12 14 56 chain 37273 chr9 141213431 + 88975638 88976085 LTR10F 562 - 0 562 73129 312 0 115 135 chain 180049 chr9 141213431 + 88976543 88978922 Harlequin-int 5206 - 2738 5056 20987 416 0 2 112 2 0 122 0 2 5 2 0 49 6 7 26 14 1 161 1 2 30 0 1 27 11 16 141 0 1 59 2 0 65 21 1 517 8 9 18 1 0 195 4 0 189 2 0 5 0 3 5 45 9 65 0 4 53 chain 36711 chr9 141213431 + 88982430 88982877 LTR10F 562 - 0 562 73943 331 3 118 113 chain 7127 chr9 141213431 + 88984495 88984624 LTR24C 604 + 476 604 176566 22 29 28 78 chain 30731 chr9 141213431 + 88990893 88991366 MER9a3 513 + 0 491 82984 18 0 2 80 10 11 68 12 13 66 1 0 38 0 10 102 9 12 4 1 0 9 0 1 24 16 18 15 chain 544481 chr9 141213431 + 88992381 88998541 L1PA4 6152 - 1 6151 2145 767 1 0 2201 1 0 18 0 1 421 0 1 310 7 3 583 0 1 1269 1 0 116 6 0 459 chain 504949 chr9 141213431 + 89004886 89011042 L1PA6 6164 + 0 6162 6539 165 0 2 215 33 31 36 8 0 10 3 4 100 3 1 5 1 0 227 3 20 255 29 11 436 0 1 94 4 5 32 0 1 390 0 1 171 0 2 101 6 10 140 0 1 96 0 1 613 0 1 9 5 4 512 1 3 595 0 2 1091 0 2 436 1 0 183 0 1 142 1 0 4 chain 11725 chr9 141213431 + 89037869 89038039 U2 167 - 3 167 153364 22 2 0 3 2 0 9 6 4 126 chain 31820 chr9 141213431 + 89052952 89053426 MER4A1 472 + 0 471 81130 126 6 5 94 9 7 53 17 15 96 17 19 56 chain 33806 chr9 141213431 + 89075017 89075452 MER57A1 433 + 0 433 77932 122 0 1 169 3 0 141 chain 14117 chr9 141213431 + 89078849 89079214 L1M1 2793 - 1774 2131 144156 16 1 0 10 2 0 44 15 19 25 15 12 54 1 0 9 2 0 14 37 51 20 2 0 5 2 0 11 40 27 40 chain 505884 chr9 141213431 + 89089668 89096074 L1PA5 6144 - 16 6141 6474 827 0 4 76 160 0 988 286 0 16 0 1 611 0 1 5 2 1 372 0 2 206 35 14 334 0 1 82 0 1 205 0 4 63 3 1 376 0 2 763 10 1 352 4 4 295 0 168 218 4 18 113 chain 8689 chr9 141213431 + 89090590 89090685 L1PA4 6152 + 6056 6151 167252 95 chain 10579 chr9 141213431 + 89098493 89098714 PrimLTR79 487 - 261 487 157921 27 9 10 30 20 19 21 25 31 82 1 0 6 chain 181652 chr9 141213431 + 89133432 89136844 MER57-int 2662 + 120 2659 20828 40 4 0 79 307 0 75 4 1 104 40 0 80 5 4 173 17 13 74 1 8 185 310 7 230 0 1 4 2 1 44 9 27 129 1 0 72 4 6 196 210 12 220 3 4 235 0 1 187 2 0 7 5 1 80 22 16 53 0 1 17 67 41 6 0 5 24 1 0 6 9 4 32 3 0 34 chain 27766 chr9 141213431 + 89136849 89137254 MER57A1 433 + 0 405 93820 161 9 2 106 13 17 14 21 24 81 chain 19068 chr9 141213431 + 89150132 89150373 MER4-int 2692 - 12 261 129915 106 0 11 53 1 0 17 1 0 31 1 0 31 chain 22680 chr9 141213431 + 89152471 89152815 THE1B 368 - 0 368 117163 124 18 30 10 8 6 18 9 8 117 0 15 40 chain 49499 chr9 141213431 + 89183900 89184615 MER50 708 - 13 695 59389 213 1 0 234 45 20 56 6 7 59 1 2 45 2 0 9 7 0 37 chain 2622 chr9 141213431 + 89200097 89200149 MER53 195 + 113 166 231398 18 3 0 5 3 7 23 chain 119282 chr9 141213431 + 89201748 89203500 HERVH-int 3825 - 2044 3825 31300 65 4 31 903 0 3 14 0 2 6 0 1 57 23 1 14 0 2 22 6 56 24 1 0 10 1 0 39 101 31 11 2 0 53 187 226 10 0 1 199 chain 5115 chr9 141213431 + 89202974 89203038 HERVH-int 3825 - 3325 3387 192263 11 2 0 51 chain 4285 chr9 141213431 + 89203120 89203168 HERVH-int 3825 - 3341 3389 203419 48 chain 40180 chr9 141213431 + 89203500 89203972 LTR7Y 441 - 0 441 69064 276 31 0 165 chain 5648 chr9 141213431 + 89212270 89212435 MLT1A 405 - 142 340 188579 45 84 117 36 chain 549844 chr9 141213431 + 89220968 89226969 L1PA2 6032 - 1 6024 1468 1110 0 22 4642 1 0 184 0 1 64 chain 24876 chr9 141213431 + 89355190 89355492 L1PA4 6152 + 5839 6143 105480 137 1 3 164 chain 12046 chr9 141213431 + 89384513 89384659 L1PB2 3958 - 761 907 152002 146 chain 15104 chr9 141213431 + 89399080 89399376 THE1C 375 + 25 335 141018 22 28 37 51 0 4 39 1 0 7 48 50 100 chain 334253 chr9 141213431 + 89463693 89467756 L1PA7 6471 - 6 4062 12046 6 3 0 147 1 2 167 0 13 20 6 7 248 0 1 60 0 1 169 0 3 115 0 3 113 9 8 186 2 0 181 0 1 435 0 1 4 1 0 209 0 1 106 0 1 539 0 1 680 0 8 397 38 0 111 0 2 110 chain 10910 chr9 141213431 + 89467978 89468127 L1PA16 3655 - 118 268 156554 126 4 5 19 chain 2866 chr9 141213431 + 89495037 89495072 MER74A 558 - 443 479 227576 25 0 1 10 chain 46177 chr9 141213431 + 89509612 89510166 MER41A 554 + 0 554 61870 554 chain 79600 chr9 141213431 + 89514069 89515123 MER11C 1089 - 16 1089 43777 11 0 1 141 1 0 54 0 1 127 0 1 38 1 0 4 1 5 112 43 43 149 1 0 65 0 4 57 4 13 69 0 2 176 chain 6608 chr9 141213431 + 89523942 89524024 MLT1D 503 - 331 413 180396 82 chain 125075 chr9 141213431 + 89542672 89545268 L1MA2 4263 + 2259 4114 29370 5 0 1 242 14 9 25 112 10 93 3 0 6 7 14 6 0 1 42 3 0 104 0 3 79 0 3 112 0 8 7 8 0 85 0 10 102 320 0 37 0 2 93 399 76 225 4 3 36 0 1 110 3 0 149 12 10 44 0 1 45 7 0 46 1 0 10 chain 9808 chr9 141213431 + 89607693 89607818 MER30 238 + 118 238 161555 6 5 0 114 chain 74519 chr9 141213431 + 89643835 89644700 L1PA5 6144 + 5266 6128 46260 455 5 1 88 1 2 316 chain 2697 chr9 141213431 + 89645204 89645237 U1 164 + 0 32 230246 18 1 0 14 chain 544428 chr9 141213431 + 89656797 89662807 L1PA3long 6157 + 1 6152 2153 23 0 5 123 0 1 623 0 128 3238 0 1 1858 0 6 145 chain 3354 chr9 141213431 + 89663657 89663698 L1MB7 1623 + 946 987 217991 41 chain 10497 chr9 141213431 + 89666293 89666427 L1PA16 3655 - 1038 1172 158259 134 chain 19054 chr9 141213431 + 89733803 89734056 AluJb 308 + 26 285 129956 171 1 0 22 7 14 52 chain 28400 chr9 141213431 + 89747333 89747632 AluYa8 305 + 0 299 91582 299 chain 95493 chr9 141213431 + 89748073 89749273 L1PA8 5853 + 4653 5853 37958 356 0 2 510 0 3 40 1 0 46 8 6 62 2 1 15 6 7 37 5 4 18 1 0 93 chain 4129 chr9 141213431 + 89752092 89752142 MER3 215 + 60 110 205514 50 chain 38983 chr9 141213431 + 89779275 89780018 L1PB1 5432 - 5 646 70763 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 8 14 11 19 24 12 14 3 2 25 0 1 18 1 0 15 2 1 52 2 0 7 9 5 12 3 2 4 1 0 24 90 18 112 0 1 117 0 1 79 chain 2780 chr9 141213431 + 89787764 89787841 L1MD 993 + 204 289 229006 29 1 23 9 0 8 7 22 0 9 chain 28918 chr9 141213431 + 89799095 89799407 AluYf4 310 - 2 310 89385 176 4 0 132 chain 23299 chr9 141213431 + 89806149 89806429 AluSq2 311 + 11 292 114206 122 0 1 158 chain 13961 chr9 141213431 + 89815686 89815977 L1PB1 5432 + 5150 5413 144701 8 4 0 9 2 0 53 2 1 16 1 0 44 3 2 13 3 0 7 13 5 18 4 2 4 1 0 14 2 0 16 9 0 7 0 8 14 1 0 13 1 0 9 chain 25541 chr9 141213431 + 89822709 89822986 AluYa5 310 - 0 277 102050 277 chain 27834 chr9 141213431 + 89825107 89825435 L1PA4 6152 - 14 336 92390 51 9 0 160 0 3 108 chain 58714 chr9 141213431 + 89825435 89826084 L1PA4 6152 - 0 649 53573 649 chain 14964 chr9 141213431 + 89842625 89842854 MER44A 345 + 96 320 141438 164 30 25 35 chain 17962 chr9 141213431 + 89856323 89856560 AluY 311 + 72 296 132954 60 0 1 155 14 0 8 chain 20559 chr9 141213431 + 89878769 89879011 L1PA4 6152 + 5898 6152 125438 103 1 8 132 0 5 6 chain 16563 chr9 141213431 + 89905972 89906147 AluYa5 310 - 3 178 136762 175 chain 10510 chr9 141213431 + 89914875 89915031 L1MA6 2487 - 283 436 158206 129 13 10 14 chain 19510 chr9 141213431 + 89926365 89926618 L1PB2 3958 + 2207 2464 128625 79 3 7 171 chain 25315 chr9 141213431 + 89936014 89936376 THE1B 368 + 0 367 103146 44 8 23 105 2 1 22 2 0 49 7 0 123 chain 33538 chr9 141213431 + 89993059 89993495 MLT2A1 477 - 8 477 78334 29 21 55 181 0 1 23 0 1 8 3 0 171 chain 39213 chr9 141213431 + 90025608 90026061 LTR7 482 + 0 482 70440 56 2 0 205 0 31 190 chain 303894 chr9 141213431 + 90026063 90029877 HERVH-int 3825 + 0 3823 13249 532 188 0 38 2 1 9 1 0 9 1 0 14 7 1 15 1 0 12 3 0 25 1 0 65 17 0 8 2 1 38 10 11 36 0 1 407 15 0 462 4 31 290 0 4 443 0 1 666 8 218 485 chain 43764 chr9 141213431 + 90031139 90031621 LTR7 482 + 0 482 64493 482 chain 30148 chr9 141213431 + 90054032 90054350 AluYb8 318 - 0 318 84332 318 chain 26925 chr9 141213431 + 90061192 90061535 THE1B 368 + 0 341 96531 172 1 0 20 1 0 149 chain 57179 chr9 141213431 + 90069300 90069991 MSTA-int 1630 - 20 718 54419 88 0 6 148 1 2 454 chain 22521 chr9 141213431 + 90078689 90078981 AluSg4 309 + 0 296 117928 20 4 8 177 1 2 4 1 0 85 chain 23638 chr9 141213431 + 90080279 90080576 AluY 311 + 19 310 112367 107 7 0 15 1 2 167 chain 4887 chr9 141213431 + 90080667 90080722 LTR24B 570 + 507 562 196405 55 chain 13564 chr9 141213431 + 90082224 90082416 MER41B 635 + 0 193 146119 120 11 12 61 chain 22022 chr9 141213431 + 90120311 90120589 AluSg4 309 - 12 289 120133 154 13 12 111 chain 25737 chr9 141213431 + 90170421 90170709 AluSp 311 - 15 303 101132 288 chain 5253 chr9 141213431 + 90275654 90275739 L1PB4 2604 - 119 197 192485 6 6 0 68 1 0 4 chain 3087 chr9 141213431 + 90326267 90326335 L1MB3 1562 + 1446 1516 223151 20 1 0 6 1 0 6 10 11 5 0 3 19 chain 86612 chr9 141213431 + 90358706 90359691 L1PA5 6144 + 5138 6126 40923 128 0 1 140 0 1 107 0 1 610 chain 38554 chr9 141213431 + 90361800 90362327 L1MA3 4352 - 893 1429 71362 72 1 0 120 1 0 4 0 1 158 12 20 59 0 2 76 0 1 4 1 0 19 chain 16740 chr9 141213431 + 90366701 90366886 L1PA3long 6157 - 2 187 136282 185 chain 3016 chr9 141213431 + 90369772 90369805 MLT2B4 540 + 505 538 224716 33 chain 168078 chr9 141213431 + 90372471 90374860 SVA_D 2077 - 0 2077 22275 595 0 98 324 520 26 14 1 2 64 1 38 20 0 40 629 0 6 221 chain 731 chr9 141213431 + 90373390 90373420 SVA_D 2077 - 890 920 109913 30 chain 24815 chr9 141213431 + 90373507 90373893 SVA_F 1814 - 611 1434 105806 16 1 0 8 37 10 4 1 0 37 1 0 166 6 472 53 3 5 44 1 0 8 chain 2501 chr9 141213431 + 90373532 90373569 SVA_F 1814 - 734 771 133873 37 chain 6600 chr9 141213431 + 90384435 90384545 L1PA16 3655 - 63 156 180459 8 15 0 5 3 0 8 0 1 71 chain 38912 chr9 141213431 + 90394258 90394701 MER9a2 513 - 38 504 70850 428 0 23 15 chain 13922 chr9 141213431 + 90423143 90423528 MER61D 487 + 113 486 144854 104 24 21 34 142 135 38 11 10 18 1 0 13 chain 13941 chr9 141213431 + 90449637 90449835 LTR1 825 - 528 770 144783 31 1 45 105 1 0 4 7 8 49 chain 23332 chr9 141213431 + 90462560 90462924 THE1B 368 - 0 368 114015 125 63 66 156 1 2 19 chain 531153 chr9 141213431 + 90517053 90523164 L1PA4 6152 + 6 6151 4061 388 2 1 172 9 10 98 0 2 273 0 4 504 0 12 36 0 1 70 0 3 261 0 5 474 9 5 927 0 4 49 0 2 1044 0 4 946 0 1 91 0 1 740 1 0 17 chain 24906 chr9 141213431 + 90528579 90528888 AluY 311 + 4 308 105301 127 2 0 19 4 1 157 chain 5928 chr9 141213431 + 90541938 90542067 MSTA-int 1630 - 17 140 185911 4 1 0 42 15 12 5 1 0 32 13 12 16 chain 22916 chr9 141213431 + 90562081 90562381 THE1B 368 + 0 306 116030 169 1 0 11 0 1 17 0 3 13 0 4 24 1 0 64 chain 26083 chr9 141213431 + 90567880 90568177 AluYk4 311 - 14 311 99698 297 chain 19507 chr9 141213431 + 90598723 90599007 L1PB4 2604 + 2106 2380 128638 235 30 20 19 chain 39335 chr9 141213431 + 90599060 90599636 LTR14 556 - 0 556 70272 110 27 29 64 2 1 13 23 21 53 19 0 265 chain 24367 chr9 141213431 + 90610565 90610857 AluY 311 + 5 298 108276 127 0 1 165 chain 8800 chr9 141213431 + 90613145 90613250 U6 107 - 2 107 166646 105 chain 6411 chr9 141213431 + 90615381 90615473 MER63C 923 - 58 143 181940 8 7 0 77 chain 24263 chr9 141213431 + 90615713 90616068 THE1B 368 + 0 368 108884 19 1 0 153 4 3 23 30 45 125 chain 122276 chr9 141213431 + 90616068 90617633 THE1B-int 1605 + 0 1598 30288 12 3 5 23 0 2 38 0 1 347 1 26 217 0 1 411 1 8 331 5 0 176 chain 30083 chr9 141213431 + 90619107 90619424 AluYb8 318 + 0 317 84549 317 chain 8276 chr9 141213431 + 90623640 90623785 MER44B 551 + 427 550 169539 33 7 0 52 10 0 28 1 0 4 4 0 6 chain 24570 chr9 141213431 + 90641378 90641667 AluSp 311 - 9 298 107140 289 chain 18145 chr9 141213431 + 90651367 90651655 MER1B 344 + 41 344 132474 38 25 38 99 4 0 51 16 22 55 chain 42456 chr9 141213431 + 90662005 90662546 MER41A 554 - 0 544 66067 123 0 1 121 0 1 215 5 6 77 chain 23567 chr9 141213431 + 90676250 90676540 AluSp 311 - 10 300 112760 64 1 2 103 1 0 121 chain 43290 chr9 141213431 + 90680189 90680764 LTR66 600 - 0 600 65066 37 1 3 39 18 50 14 0 1 51 10 0 405 chain 181415 chr9 141213431 + 90685426 90688769 L1PB2 3958 + 1269 3835 20854 26 4 8 116 0 2 153 2 0 16 4 0 57 0 3 112 1 2 106 4 1 408 17 19 151 5 0 28 0 3 220 28 6 161 307 0 57 1 0 153 451 7 124 4 8 27 0 1 61 2 0 8 0 2 43 1 4 11 28 15 51 2 0 12 2 0 94 3 2 70 1 0 64 7 6 67 29 37 44 chain 5717 chr9 141213431 + 90698480 90698550 LTR56 451 - 177 247 187956 70 chain 24569 chr9 141213431 + 90701084 90701372 AluSp 311 - 23 311 107150 288 chain 38543 chr9 141213431 + 90768313 90768753 L1PA4 6152 + 5712 6152 71375 440 chain 25592 chr9 141213431 + 90796821 90797132 AluSp 311 + 2 310 101768 122 3 0 186 chain 21966 chr9 141213431 + 90810828 90811825 LTR29 598 - 0 462 120369 15 58 49 46 1 0 64 568 0 58 0 3 33 0 4 8 5 1 53 16 55 36 13 14 23 chain 36735 chr9 141213431 + 90820369 90820826 LTR2 463 - 0 463 73902 333 0 3 71 0 3 53 chain 28107 chr9 141213431 + 90821416 90821754 MER9a3 513 - 0 338 92625 38 4 5 17 1 0 278 chain 146918 chr9 141213431 + 90823680 90825325 L1PA5 6144 - 27 1672 25030 1645 chain 66304 chr9 141213431 + 90825325 90826065 L1PA5 6144 + 3705 4445 49879 740 chain 39036 chr9 141213431 + 90834916 90835380 LTR2 463 + 0 463 70682 356 12 11 96 chain 5334 chr9 141213431 + 90856573 90856638 L1MD2 1676 + 337 402 191692 65 chain 164195 chr9 141213431 + 90859015 90860914 SVA_D 2077 - 3 2077 22781 96 0 4 492 0 49 213 1 0 152 0 1 15 16 18 33 0 85 88 40 0 78 0 40 71 0 40 574 5 0 25 chain 9395 chr9 141213431 + 90867651 90867831 MSTA 426 + 0 205 163584 66 54 79 60 chain 13964 chr9 141213431 + 90869109 90869298 MER47A 366 + 71 264 144692 91 13 17 85 chain 23664 chr9 141213431 + 90877472 90877879 LOR1b 457 - 26 457 112228 52 31 0 10 0 32 63 6 7 54 11 17 101 0 1 24 6 9 18 1 13 30 chain 22434 chr9 141213431 + 90893500 90893770 AluSc8 310 + 13 287 118327 118 0 4 152 chain 23918 chr9 141213431 + 90896770 90897057 AluSp 311 + 11 298 110820 287 chain 28104 chr9 141213431 + 90901581 90902097 PABL_A 660 + 310 652 92636 174 173 0 85 1 0 83 chain 111736 chr9 141213431 + 90911118 90912349 L1PA4 6152 - 3264 4496 33743 1172 0 1 59 chain 286722 chr9 141213431 + 90912350 90915577 L1PA4 6152 + 2903 6152 14243 140 0 1 821 0 1 88 0 2 901 0 9 688 0 1 262 0 1 164 1 2 24 0 1 132 0 5 6 chain 27136 chr9 141213431 + 90947164 90947906 LTR7B 505 - 0 505 95806 48 17 16 54 309 0 25 1 0 62 0 88 17 35 11 69 0 10 105 chain 5267 chr9 141213431 + 90948372 90948439 LTR7B 505 - 118 184 192341 25 1 0 41 chain 19124 chr9 141213431 + 90958932 90959280 THE1D 372 - 32 370 129762 123 46 51 26 0 4 54 0 10 27 41 12 31 chain 27434 chr9 141213431 + 90965379 90965730 THE1A 353 - 0 350 94867 90 0 1 34 1 0 118 2 1 106 chain 39875 chr9 141213431 + 90968778 90969332 LTR8 732 + 142 732 69499 13 1 7 141 21 49 150 0 5 19 14 11 195 chain 59024 chr9 141213431 + 90971467 90973663 THE1A-int 1579 + 17 1579 53377 288 0 1 98 1427 791 98 3 2 9 0 1 114 1 2 158 chain 25462 chr9 141213431 + 90974229 90974522 AluSp 311 - 8 300 102397 171 1 0 121 chain 24944 chr9 141213431 + 90983178 90983879 MER61E 571 + 0 389 105084 122 8 9 39 329 20 83 18 14 102 chain 8783 chr9 141213431 + 90985033 90985150 MER85 139 - 0 129 166752 30 1 13 86 chain 6551 chr9 141213431 + 90989183 90989255 U3 216 + 0 72 180838 72 chain 145027 chr9 141213431 + 90989272 90990909 L1PA5 6144 + 4502 6144 25323 483 4 0 310 1 5 29 0 1 413 0 3 83 0 1 314 chain 9054 chr9 141213431 + 90992129 90992265 LTR8 732 + 571 712 165287 42 15 20 79 chain 25071 chr9 141213431 + 90993653 90993937 AluSp 311 - 17 302 104450 14 0 1 270 chain 50544 chr9 141213431 + 90995432 90996780 MER4E 760 + 0 721 58619 24 1 0 54 0 8 65 12 15 53 9 6 44 24 4 4 1 0 92 8 10 67 1 0 216 610 0 22 5 1 36 chain 38004 chr9 141213431 + 90996111 90996713 LTR10F 562 - 8 562 72126 53 0 1 107 1 10 112 0 1 39 0 3 57 0 56 10 118 0 105 chain 4791 chr9 141213431 + 91001466 91001520 MER20 218 + 90 144 197452 54 chain 7709 chr9 141213431 + 91016313 91016456 MER2 342 - 26 137 172872 16 37 5 90 chain 5722 chr9 141213431 + 91020621 91020752 Tigger3b 1229 - 1018 1161 187910 22 27 7 33 13 45 36 chain 36514 chr9 141213431 + 91033985 91034483 LTR10F 562 + 0 554 74222 104 15 4 53 0 70 197 3 0 5 0 2 63 4 2 54 chain 28762 chr9 141213431 + 91051669 91051979 AluYa5 310 - 1 310 90059 176 2 1 132 chain 22975 chr9 141213431 + 91068452 91068737 AluSp 311 - 16 308 115734 13 3 0 39 1 11 229 chain 3212 chr9 141213431 + 91079548 91079649 Charlie1a 1436 + 768 871 220715 29 1 0 10 46 49 15 chain 22622 chr9 141213431 + 91086303 91086594 AluSg 306 + 6 305 117474 118 9 17 164 chain 38187 chr9 141213431 + 91125470 91125974 LTR10F 562 + 0 562 71854 163 28 0 11 0 80 12 5 11 285 chain 4734 chr9 141213431 + 91126366 91126429 LTR8 732 - 0 82 198115 42 0 19 21 chain 40395 chr9 141213431 + 91128023 91128484 LTR2 463 - 0 461 68742 461 chain 31318 chr9 141213431 + 91128853 91129641 MER41A 554 + 0 477 81958 193 373 0 69 6 7 16 0 1 123 0 60 8 chain 65858 chr9 141213431 + 91131957 91132731 L1PA7 6471 - 4 780 50163 755 1 3 18 chain 19696 chr9 141213431 + 91171723 91171966 AluSc8 310 + 13 255 128117 110 1 0 132 chain 28455 chr9 141213431 + 91175931 91176461 MLT2A1 477 + 0 477 91358 48 0 2 64 1 0 5 0 1 5 12 16 27 1 5 184 24 8 19 102 56 19 1 0 18 chain 23216 chr9 141213431 + 91177748 91178027 AluSc 308 + 26 305 114614 279 chain 23159 chr9 141213431 + 91179342 91179619 AluSp 311 - 23 300 114859 277 chain 8623 chr9 141213431 + 91181519 91181669 L1MB1 2102 - 929 1074 167621 4 1 0 85 12 13 19 14 9 15 chain 4593 chr9 141213431 + 91183150 91183203 MER3 215 + 145 198 199709 53 chain 23586 chr9 141213431 + 91189213 91189519 MER4A1 472 - 34 363 112657 34 6 8 151 0 21 115 chain 21246 chr9 141213431 + 91194767 91195065 AluSc8 310 + 4 296 123035 32 2 1 5 0 1 80 12 5 79 1 2 87 chain 529083 chr9 141213431 + 91212247 91218393 L1PA6 6164 + 7 6162 4288 87 0 1 836 0 2 320 0 1 380 0 1 578 1 5 221 0 1 495 0 1 190 0 8 55 0 1 8 0 1 816 15 2 716 10 6 428 0 5 990 chain 13289 chr9 141213431 + 91222803 91222954 AluSp 311 - 18 169 147132 151 chain 39497 chr9 141213431 + 91230582 91231131 L1PA8 5853 - 6 554 70024 86 2 1 19 2 1 52 1 0 9 2 1 57 1 5 6 2 0 46 1 0 145 0 2 118 chain 6842 chr9 141213431 + 91235229 91235334 MER54B 801 - 586 690 178647 14 12 11 79 chain 141414 chr9 141213431 + 91240433 91241961 SVA_F 1814 + 9 1814 25917 207 1 0 483 0 40 149 2 0 42 0 241 16 1 0 627 chain 16919 chr9 141213431 + 91244861 91245151 L1PB2 3958 - 146 450 135798 37 10 9 12 2 0 72 2 1 61 5 4 6 0 3 7 3 0 29 7 26 37 chain 115868 chr9 141213431 + 91246274 91248377 L1PA14 3548 - 92 1830 32508 29 13 12 19 1 0 9 11 55 91 7 12 9 1 0 83 2 1 5 2 0 13 13 9 104 9 5 47 2 0 14 3 1 24 4 3 172 9 8 42 1 0 39 0 12 38 0 2 60 7 5 73 1 2 82 6 0 175 3 0 132 390 0 273 8 1 77 chain 3560 chr9 141213431 + 91260300 91260355 MLT1J2 417 - 303 357 214338 16 5 4 34 chain 162041 chr9 141213431 + 91282598 91284439 L1PA4 6152 - 16 1869 23058 97 0 1 54 1 2 54 0 1 150 0 1 333 2 0 64 1 3 68 0 4 949 0 4 68 chain 111065 chr9 141213431 + 91284439 91285852 L1PA11 4918 - 421 1825 33897 9 1 0 7 8 6 67 3 1 13 2 1 54 1 0 4 5 1 668 0 1 245 1 0 100 0 2 225 chain 4944 chr9 141213431 + 91300501 91300612 LTR12C 1709 - 872 943 177831 17 28 3 44 15 0 7 chain 10899 chr9 141213431 + 91300614 91300754 LTR12C 1709 - 641 940 156593 72 0 159 68 chain 10598 chr9 141213431 + 91301401 91301533 MER41B 635 + 503 635 157837 132 chain 26262 chr9 141213431 + 91305715 91306068 MER41-int 2638 + 2076 2429 98971 26 4 0 124 3 5 92 1 0 9 0 3 94 chain 2929 chr9 141213431 + 91313504 91313535 MLT1G1 539 + 477 508 226541 31 chain 33589 chr9 141213431 + 91323382 91323825 L1PA8 5853 + 5411 5847 78256 153 1 0 46 2 0 63 20 18 49 2 1 19 2 1 86 chain 53107 chr9 141213431 + 91375252 91375940 L1PA8 5853 - 0 681 56957 93 1 0 19 4 3 50 1 0 4 19 19 57 2 0 44 1 0 49 1 0 343 chain 3577 chr9 141213431 + 91435210 91435357 LTR41B 718 - 561 716 214024 22 90 98 35 chain 33347 chr9 141213431 + 91435566 91435960 L1PA7 6471 - 5 397 78659 9 3 0 295 0 1 87 chain 4230 chr9 141213431 + 91436583 91436628 MADE1 96 + 0 45 204169 45 chain 24325 chr9 141213431 + 91449504 91449788 AluY 311 + 8 297 108514 57 0 5 227 chain 18262 chr9 141213431 + 91470909 91471143 MER75B 242 + 0 242 132172 179 0 6 40 0 1 5 0 1 10 chain 92688 chr9 141213431 + 91496536 91497865 L1PB2 3958 - 124 1431 38752 59 1 0 22 2 0 74 1 0 62 1 0 58 3 0 5 0 1 4 3 4 39 5 4 50 4 0 13 2 0 53 30 23 38 18 16 385 1 0 185 0 1 17 6 5 171 0 1 17 chain 317691 chr9 141213431 + 91522386 91526137 L1P2 5180 + 2 4257 12687 86 0 507 192 1 0 6 1 0 162 1 0 17 1 0 849 0 2 500 1 2 520 12 8 1027 8 7 143 4 7 220 chain 16200 chr9 141213431 + 91531967 91532161 MER107 203 + 3 203 137755 159 0 6 35 chain 37671 chr9 141213431 + 91548788 91549250 LTR2 463 - 0 463 72584 22 0 1 33 2 1 37 0 1 368 chain 3689 chr9 141213431 + 91554554 91554895 L1PB1 5432 - 19 329 52656 9 1 0 13 1 0 21 1 0 22 2 0 16 1 0 4 10 8 12 29 18 9 1 0 41 11 10 9 2 1 22 5 6 25 2 0 9 16 11 13 1 0 9 0 1 10 3 0 11 chain 27316 chr9 141213431 + 91554925 91555250 LTR17 781 - 455 781 95220 33 0 1 292 chain 156833 chr9 141213431 + 91555564 91557431 HERV17-int 4347 - 0 3539 23751 388 2 1 46 1 2 175 0 1672 591 1 2 232 1 0 430 chain 36202 chr9 141213431 + 91558884 91559339 LTR17 781 - 0 526 74624 36 0 23 119 0 49 227 1 0 72 chain 8481 chr9 141213431 + 91559349 91560133 L1PB1 5432 - 329 1090 52656 50 10 10 39 10 0 283 0 3 13 31 18 66 9 7 182 2 0 55 0 1 34 chain 74744 chr9 141213431 + 91573631 91574471 SVA_D 2077 - 4 852 46140 334 0 10 328 11 8 4 0 1 163 chain 10863 chr9 141213431 + 91578019 91578207 L1MA7 2200 + 795 985 156732 61 18 19 29 15 16 65 chain 49519 chr9 141213431 + 91595017 91595626 PABL_A 660 - 27 660 59375 142 1 0 49 0 1 345 8 17 42 1 16 21 chain 138451 chr9 141213431 + 91631916 91633543 L1PA7 6471 + 4812 6452 26401 7 0 1 559 0 1 234 0 3 136 0 3 343 0 2 36 2 0 190 0 5 120 chain 51687 chr9 141213431 + 91640450 91641531 MER4D1 891 + 50 814 57825 153 0 14 101 14 0 99 2 1 11 1 0 45 347 12 32 9 10 70 0 7 61 1 0 52 14 27 69 chain 24833 chr9 141213431 + 91736206 91736493 AluSp 311 - 13 300 105706 287 chain 61687 chr9 141213431 + 91738979 91739768 L1PA8 5853 + 5072 5853 52041 15 4 0 189 0 2 200 0 1 85 1 0 44 2 0 74 1 0 11 1 0 7 0 1 37 4 3 19 6 5 47 1 0 41 chain 486612 chr9 141213431 + 91743249 91748832 L1PA5 6144 + 565 6140 7493 604 9 0 1133 8 0 205 0 1 453 0 8 1984 0 1 340 1 0 846 chain 116125 chr9 141213431 + 91749458 91751130 MER41-int 2638 + 981 2632 32407 49 1 0 118 17 18 369 5 8 4 1 0 121 1 0 28 1 0 113 0 2 40 2 0 25 14 11 25 6 7 53 17 0 14 3 4 38 3 0 67 3 0 99 3 0 24 3 5 5 2 0 285 10 16 103 chain 78552 chr9 141213431 + 91753631 91754714 MER41-int 2638 - 0 1075 44240 105 0 4 299 7 9 20 5 0 5 3 0 94 0 1 191 2 0 34 2 0 125 5 6 19 3 1 29 1 0 25 1 0 108 chain 41743 chr9 141213431 + 91757889 91758448 MER41A 554 - 0 554 66973 29 1 2 24 9 2 100 2 1 4 0 1 298 0 1 92 chain 11018 chr9 141213431 + 91769079 91769232 MER30 238 + 80 236 156131 27 8 14 69 3 0 46 chain 33459 chr9 141213431 + 91774447 91774890 MLT2A1 477 - 0 477 78477 37 11 47 8 4 0 215 4 1 38 0 5 126 chain 200126 chr9 141213431 + 91776509 91778672 L1PA2 6032 + 3869 6032 19197 2163 chain 126861 chr9 141213431 + 91814171 91815621 L1PA4 6152 + 4721 6151 28846 1142 13 1 45 9 0 234 0 1 7 chain 111657 chr9 141213431 + 91824136 91825666 LTR12C 1709 + 0 1709 33760 215 3 4 59 17 18 42 7 50 76 0 1 4 32 23 15 0 8 140 0 119 63 1 0 234 0 47 97 44 13 327 0 1 71 1 0 82 chain 21697 chr9 141213431 + 91826222 91826526 AluY 311 + 4 299 121399 119 4 6 144 15 9 9 5 0 8 chain 28999 chr9 141213431 + 91870400 91870706 AluYf4 310 + 0 306 88989 306 chain 19815 chr9 141213431 + 91882226 91882506 L1PB2 3958 - 120 397 127765 60 5 4 21 2 0 72 1 0 64 1 0 22 0 2 32 chain 118761 chr9 141213431 + 91897164 91898584 LTR12C 1709 + 0 1709 31511 215 4 10 129 0 1 287 1 4 29 0 279 158 1 0 5 3 1 106 0 4 277 1 0 204 chain 38741 chr9 141213431 + 91910256 91910709 LTR19B 566 + 0 450 71090 104 0 1 138 4 0 207 chain 63010 chr9 141213431 + 91917214 91917904 L1PA3long 6157 + 5467 6157 51440 690 chain 41715 chr9 141213431 + 91918911 91919463 LTR19B 566 + 0 566 67010 89 0 5 200 14 12 140 9 8 37 0 9 11 0 3 52 chain 42559 chr9 141213431 + 91923781 91924327 MER41A 554 - 0 553 65950 21 0 1 131 0 2 166 4 8 224 chain 23369 chr9 141213431 + 91941803 91942093 AluY 311 + 8 296 113817 118 0 1 110 8 6 39 1 0 14 chain 24824 chr9 141213431 + 92010062 92010354 AluSp 311 + 4 297 105743 161 0 1 131 chain 4676 chr9 141213431 + 92024114 92024174 L1MC1 2226 + 1987 2045 198797 8 2 0 50 chain 4706 chr9 141213431 + 92060479 92060681 MLT2D 439 - 4 261 198426 41 6 25 18 116 152 21 chain 127104 chr9 141213431 + 92094402 92095897 LTR12C 1709 - 0 1709 28788 338 11 24 119 0 4 107 3 1 5 1 0 74 0 200 523 1 0 4 0 1 309 chain 30742 chr9 141213431 + 92145708 92146159 LTR22A 463 - 0 448 82965 106 13 14 57 7 6 25 1 0 6 0 1 13 16 12 127 0 1 80 chain 15698 chr9 141213431 + 92165468 92166052 MER72B 755 - 4 627 139274 6 2 0 92 273 286 53 73 102 78 1 0 6 chain 5953 chr9 141213431 + 92166556 92166628 MER72 723 - 651 723 185655 72 chain 47912 chr9 141213431 + 92178381 92178998 PRIMA4_LTR 623 - 0 623 60551 68 7 9 160 0 2 25 4 5 97 0 1 256 chain 24243 chr9 141213431 + 92180064 92180360 AluSq 315 + 6 304 108973 127 0 2 169 chain 3504 chr9 141213431 + 92188936 92188976 MSTC 436 - 392 432 215291 40 chain 11730 chr9 141213431 + 92194113 92194255 THE1C 375 - 4 145 153348 21 1 0 120 chain 60759 chr9 141213431 + 92198918 92199957 L1PA16 3655 + 1719 2789 52445 76 2 1 50 0 2 153 5 0 6 15 21 101 6 0 77 0 3 173 4 158 6 0 1 17 79 0 27 39 3 58 21 0 11 7 20 106 chain 18076 chr9 141213431 + 92296634 92296862 LTR12C 1709 + 769 1037 132659 68 1 0 139 0 41 20 chain 10911 chr9 141213431 + 92320042 92320177 MER4E 760 - 0 137 156548 8 0 2 127 chain 24882 chr9 141213431 + 92320183 92320485 AluSp 311 - 8 311 105449 298 0 1 4 chain 22815 chr9 141213431 + 92339363 92339636 AluSg 306 + 14 291 116506 252 0 4 21 chain 15347 chr9 141213431 + 92341622 92341915 THE1B 368 - 61 368 140350 65 1 0 10 1 0 13 0 4 14 0 3 29 1 0 34 1 3 15 8 9 22 44 51 35 chain 27778 chr9 141213431 + 92470620 92470927 AluYf5 307 - 0 307 93770 307 chain 21955 chr9 141213431 + 92694946 92695213 AluSp 311 + 20 287 120402 267 chain 22553 chr9 141213431 + 92710459 92710723 L1PA5 6144 + 5885 6142 117796 119 7 0 138 chain 23892 chr9 141213431 + 92715786 92716046 L1PA2 6032 + 5772 6032 110947 260 chain 25844 chr9 141213431 + 92722081 92722369 AluYa5 310 - 21 310 100677 162 0 1 126 chain 33062 chr9 141213431 + 92803614 92804043 LTR12F 595 - 0 595 79114 193 1 0 14 1 0 23 0 1 104 2 169 91 chain 4164 chr9 141213431 + 92828562 92828620 MADE1 96 - 8 95 205042 16 1 0 4 0 30 37 chain 9385 chr9 141213431 + 92861882 92862053 MER30 238 + 46 238 163632 52 11 0 9 4 33 56 10 13 29 chain 28989 chr9 141213431 + 92886295 92886613 AluYa5 310 - 0 310 89043 57 8 0 253 chain 3403 chr9 141213431 + 92886882 92886922 L1M4c 1769 - 1527 1567 217015 40 chain 29277 chr9 141213431 + 92892758 92893100 L1PA7 6471 - 17 359 87659 139 1 0 183 0 1 19 chain 24282 chr9 141213431 + 92901926 92902221 AluSp 311 - 10 300 108758 6 2 0 6 2 0 157 1 0 121 chain 566757 chr9 141213431 + 92911886 92917911 L1HS 6032 + 1 6026 104 6025 chain 10637 chr9 141213431 + 92948719 92948845 L1PB4 2604 - 69 195 157664 126 chain 120304 chr9 141213431 + 92951849 92953312 L1PA8 5853 - 0 1456 30938 93 1 0 16 1 0 56 1 0 6 1 0 70 7 5 43 1 0 1167 chain 521725 chr9 141213431 + 92954471 92960369 L1PA4 6152 + 0 5905 4993 604 0 1 1770 0 1 1086 0 1 52 0 1 736 3 2 1145 0 3 495 0 1 7 chain 10146 chr9 141213431 + 92972240 92972359 L1PREC2 3366 - 790 910 159870 91 0 1 28 chain 356938 chr9 141213431 + 92985924 92989986 HERVE-int 4064 + 0 4063 11435 607 0 1 205 4 1 719 1 2 676 3 0 989 4 0 197 0 10 70 1 0 586 chain 24275 chr9 141213431 + 93029319 93029602 L1P2 5180 - 3143 3427 108805 91 0 1 93 0 1 91 1 0 7 chain 22647 chr9 141213431 + 93064145 93064512 L1PA8 5853 - 0 361 117348 92 26 24 46 12 10 18 6 7 47 2 0 45 1 0 72 chain 58891 chr9 141213431 + 93093415 93094177 MER4E 760 + 0 752 53467 23 0 1 253 38 26 167 0 1 281 chain 23560 chr9 141213431 + 93127552 93127835 AluSg7 307 - 12 296 112799 163 0 1 120 chain 39747 chr9 141213431 + 93174976 93175426 LTR7 482 + 0 482 69690 225 0 1 37 1 32 187 chain 287963 chr9 141213431 + 93175428 93178898 HERVH-int 3825 + 0 3825 14160 462 0 118 19 1 0 5 28 0 15 0 37 43 1 0 56 0 1 8 0 2 12 0 3 442 15 0 462 4 31 308 0 3 1093 8 218 15 20 18 36 10 11 407 chain 44026 chr9 141213431 + 93180150 93180631 LTR7 482 + 0 482 64171 225 0 1 256 chain 13925 chr9 141213431 + 93218402 93218576 MER6 865 - 0 174 144835 174 chain 119015 chr9 141213431 + 93223710 93225170 L1PA7 6471 + 4995 6460 31402 1012 5 4 141 0 1 57 0 8 56 4 0 34 7 8 81 0 2 5 9 7 49 chain 44386 chr9 141213431 + 93268540 93269087 MER41A 554 - 0 554 63707 167 0 2 256 0 5 124 chain 45430 chr9 141213431 + 93271430 93271983 MER41A 554 + 0 554 62561 378 1 0 92 0 2 82 chain 11299 chr9 141213431 + 93279397 93279786 MER31B 477 + 46 477 155061 32 33 32 24 0 2 8 1 0 5 0 14 19 24 0 18 8 0 26 116 175 52 9 10 14 chain 31884 chr9 141213431 + 93298271 93298667 MER11C 1089 - 17 397 81041 277 8 0 20 9 1 82 chain 22802 chr9 141213431 + 93316079 93316374 AluSx 319 + 2 293 116566 131 9 6 126 1 0 28 chain 6559 chr9 141213431 + 93322565 93322758 L1PB1 5432 + 5259 5430 180786 20 4 3 14 2 0 6 16 6 18 31 26 18 1 0 7 0 1 14 1 0 12 1 0 14 1 0 8 1 0 4 chain 29386 chr9 141213431 + 93357713 93358099 MLT2A1 477 - 92 477 87141 181 0 1 18 3 4 12 4 1 168 chain 35841 chr9 141213431 + 93371169 93371770 MER4B 649 - 18 649 75076 267 5 0 15 0 1 57 78 108 34 0 4 6 3 0 21 0 1 5 1 0 30 0 1 27 18 20 34 chain 10769 chr9 141213431 + 93390150 93390303 L1PA8 5853 + 5696 5847 157113 44 2 1 18 3 2 86 chain 110985 chr9 141213431 + 93425205 93426889 L1PA13 3608 - 1836 3514 33935 577 2 7 138 1 2 141 12 14 10 10 11 32 0 3 14 10 6 187 2 0 13 6 10 55 3 0 22 0 5 9 11 18 34 7 3 16 3 1 15 2 1 13 1 0 123 1 0 4 1 0 70 25 18 23 3 0 12 2 1 13 0 1 7 2 1 7 2 0 22 6 4 15 chain 22171 chr9 141213431 + 93432811 93433081 AluY 311 + 27 297 119486 89 2 1 15 0 1 164 chain 547366 chr9 141213431 + 93448554 93454989 L1PA4 6152 + 0 6152 1784 2386 0 4 608 8 1 1352 0 4 934 0 1 189 283 0 357 0 1 310 3 0 5 chain 37940 chr9 141213431 + 93476625 93477127 PABL_B 668 - 0 668 72223 375 0 44 31 14 136 82 chain 17838 chr9 141213431 + 93485826 93486191 MER4A 717 - 0 433 133277 8 1 0 59 116 174 139 0 11 42 chain 6801 chr9 141213431 + 93492244 93492324 LTR12C 1709 + 932 1012 178947 80 chain 19856 chr9 141213431 + 93500299 93500559 THE1C-int 1605 + 1335 1594 127635 238 4 3 18 chain 42737 chr9 141213431 + 93502025 93502536 MER9a2 513 - 0 513 65737 214 1 2 264 0 1 32 chain 9177 chr9 141213431 + 93502536 93502689 THE1C-int 1605 - 1353 1560 164671 78 7 4 17 10 67 41 chain 350480 chr9 141213431 + 93517505 93521548 HERVE-int 4064 - 1 4064 11584 586 1 0 71 0 10 30 1 0 210 0 1 762 1 0 4 0 1 177 3 0 143 0 14 46 0 1 36 0 1 435 1 2 696 7 5 21 4 1 205 0 1 307 0 1 296 chain 6386 chr9 141213431 + 93532892 93532996 LTR49 580 - 7 112 182132 27 14 15 63 chain 50721 chr9 141213431 + 93544072 93544662 LTR10C 591 - 1 591 58487 80 0 2 357 2 0 151 chain 61885 chr9 141213431 + 93554779 93555453 L1PA3long 6157 + 5461 6136 51953 42 0 1 632 chain 8210 chr9 141213431 + 93579371 93579476 MER30 238 + 126 228 169890 73 3 0 29 chain 27188 chr9 141213431 + 93581652 93582009 THE1A 353 - 0 353 95637 243 1 0 21 9 6 83 chain 128703 chr9 141213431 + 93582010 93583589 THE1A-int 1579 - 2 1579 28387 116 0 1 163 0 1 28 0 1 827 14 10 50 1 0 380 chain 26127 chr9 141213431 + 93583601 93583928 THE1A 353 - 12 353 99492 48 0 14 19 0 1 149 1 0 110 chain 48735 chr9 141213431 + 93615630 93616163 L1PA3long 6157 + 5624 6157 59927 533 chain 4268 chr9 141213431 + 93637283 93637331 MADE1 96 + 48 96 203641 48 chain 15598 chr9 141213431 + 93649294 93649474 MER51B 395 - 215 395 139591 180 chain 208436 chr9 141213431 + 93755476 93757941 L1PA7 6471 - 4 2466 18611 180 21 12 573 0 2 79 1 0 636 0 1 34 0 1 683 0 2 63 0 1 195 chain 22376 chr9 141213431 + 93772071 93772443 MSTA 426 + 0 400 118601 61 5 4 29 17 22 28 0 1 8 0 6 68 25 23 44 3 23 70 2 1 12 chain 220509 chr9 141213431 + 93782954 93785922 L1PB1 5432 + 2360 5302 17846 133 15 5 79 0 5 76 0 2 157 13 12 13 2 0 623 4 0 146 0 2 39 10 11 69 1 0 6 9 5 221 1 0 123 0 1 82 1 0 457 2 0 177 0 6 230 0 1 62 1 2 9 5 0 24 1 0 5 31 24 53 6 5 12 2 1 31 1 0 11 1 0 16 2 0 6 chain 12484 chr9 141213431 + 93814246 93814476 L1MB1 2102 + 88 320 150321 12 0 1 4 1 0 140 54 56 19 chain 6263 chr9 141213431 + 93824865 93824979 MER4C 627 - 511 627 183060 35 1 0 13 5 6 19 9 11 32 chain 6156 chr9 141213431 + 93825149 93825253 LTR40b 463 + 344 459 183933 44 17 28 43 chain 27202 chr9 141213431 + 93848425 93848780 MLT2A1 477 + 0 383 95591 168 8 5 8 0 1 21 0 1 129 6 35 15 chain 22841 chr9 141213431 + 93855060 93855424 THE1B 368 + 0 368 116389 114 1 0 55 3 0 5 53 62 4 1 0 128 chain 102503 chr9 141213431 + 93855587 93857427 L1M1 2793 + 499 2209 36130 11 16 12 12 11 9 11 2 0 8 3 0 8 1 0 9 1 0 11 154 91 19 55 40 6 2 0 12 19 14 33 1 0 26 2 0 8 1 0 54 15 12 98 1 0 27 1 0 25 0 2 121 1 0 72 4 0 18 13 5 53 0 1 21 0 2 96 9 6 19 13 1 174 1 0 18 0 1 29 5 4 177 3 0 5 1 4 99 0 3 24 6 17 36 13 1 41 1 0 104 chain 3116 chr9 141213431 + 93879163 93879197 MLT1A0 366 - 70 104 222633 34 chain 20611 chr9 141213431 + 93884053 93884420 THE1B 368 + 0 368 125259 108 5 2 52 87 91 115 chain 25443 chr9 141213431 + 93896426 93896715 AluYc3 301 - 10 301 102486 175 1 3 113 chain 5342 chr9 141213431 + 93897688 93897762 L1MB3 1562 + 1265 1335 191623 7 4 0 63 chain 25215 chr9 141213431 + 93900578 93900872 AluSp 311 - 13 307 103658 294 chain 3407 chr9 141213431 + 93909955 93909992 tRNA-Tyr-TAT 37 - 0 37 216972 37 chain 5899 chr9 141213431 + 93912460 93912533 MER34A 573 + 451 524 186200 73 chain 27913 chr9 141213431 + 93967092 93967394 L1PA4 6152 + 5838 6140 93309 302 chain 539925 chr9 141213431 + 93987831 93993850 L1PA3long 6157 - 0 6146 2825 64 4 0 117 1 0 132 0 2 3814 1 0 248 1 0 328 0 3 544 9 137 196 0 4 203 0 1 78 6 1 132 0 1 141 chain 247596 chr9 141213431 + 94044918 94047750 L1PA5 6144 + 3305 6144 16372 625 1 2 542 0 1 175 3 2 623 13 12 62 0 3 35 2 4 739 1 3 11 chain 16007 chr9 141213431 + 94057198 94057574 THE1B 368 + 0 368 138335 79 53 50 5 0 3 14 97 89 128 chain 30823 chr9 141213431 + 94057583 94058099 Tigger1 2417 + 1820 2350 82829 125 0 2 23 6 12 77 41 46 31 0 1 58 15 16 38 2 0 17 25 26 58 chain 7447 chr9 141213431 + 94071496 94071586 MSTA 426 - 313 403 174458 22 1 0 5 0 1 62 chain 29514 chr9 141213431 + 94075705 94076018 AluYb9 318 + 0 313 86589 313 chain 33115 chr9 141213431 + 94082547 94082971 MER57A1 433 + 0 433 79035 48 0 8 66 0 1 156 0 1 4 1 0 149 chain 16496 chr9 141213431 + 94113847 94114116 MER1B 344 + 0 266 136934 16 12 14 30 3 4 17 10 11 125 11 4 45 chain 20957 chr9 141213431 + 94115875 94116128 AluY 311 + 36 308 124073 89 1 3 81 0 17 82 chain 2431 chr9 141213431 + 94126608 94126659 MER52C 1267 + 170 220 233949 25 14 13 12 chain 2028 chr9 141213431 + 94127213 94127234 MER52C 1267 + 941 962 238376 21 chain 4777 chr9 141213431 + 94133103 94133160 L1PA17 2846 + 2637 2693 197615 13 1 0 43 chain 25580 chr9 141213431 + 94140319 94140699 THE1B 368 + 0 368 101825 172 3 1 12 11 7 52 7 0 95 10 11 18 chain 25464 chr9 141213431 + 94177905 94178195 AluSp 311 - 8 298 102381 290 chain 509463 chr9 141213431 + 94229813 94236126 L1PA5 6144 - 2 6144 6209 8 9 0 1398 1 4 14 3 5 214 0 3 1241 0 12 40 2 1 134 0 1 690 0 8 55 4 1 132 188 0 1011 11 5 220 25 0 126 2 19 108 0 3 56 5 6 206 2 1 209 47 45 17 0 14 135 chain 190716 chr9 141213431 + 94240157 94242394 L1P3 4156 - 1918 4156 19980 613 0 9 497 0 1 712 7 0 86 2 1 58 13 12 249 chain 25183 chr9 141213431 + 94256317 94256668 THE1B 368 - 0 355 103833 126 12 10 16 1 5 11 0 1 5 0 2 6 1 0 5 0 1 11 1 0 156 chain 30749 chr9 141213431 + 94279690 94280160 LTR12F 595 + 0 592 82957 100 0 12 34 2 0 25 0 66 47 26 66 52 27 19 7 2 0 110 0 17 17 1 0 20 chain 4557 chr9 141213431 + 94303342 94303395 L1PA7 6471 + 6417 6470 200134 53 chain 47953 chr9 141213431 + 94303577 94304207 L1PBa 3878 + 3035 3666 60520 7 0 1 5 0 2 171 3 0 234 5 6 205 chain 26872 chr9 141213431 + 94335716 94336081 THE1B 368 + 0 368 96733 15 2 0 22 0 5 130 5 4 24 2 0 53 1 4 111 chain 4968 chr9 141213431 + 94340383 94340444 MLT1B 390 + 123 185 195500 8 0 1 53 chain 2904 chr9 141213431 + 94358582 94358628 MER58B 340 - 15 60 226986 18 5 4 23 chain 177539 chr9 141213431 + 94374812 94376870 L1PA5 6144 + 4068 6132 21205 71 8 9 1123 6 5 616 0 5 181 0 1 53 chain 77603 chr9 141213431 + 94389675 94390725 MER11C 1089 + 0 1063 44689 247 7 16 54 0 4 65 1 0 171 26 21 112 10 13 34 0 1 5 1 2 119 1 2 54 1 0 117 0 1 25 chain 21590 chr9 141213431 + 94414280 94414547 AluSp 311 + 20 288 121803 216 1 2 50 chain 30015 chr9 141213431 + 94415897 94416265 MLT2A1 477 + 7 380 84757 135 0 1 25 1 5 207 chain 3371 chr9 141213431 + 94416747 94416784 MSTA 426 + 377 414 217644 37 chain 24036 chr9 141213431 + 94428734 94429026 AluSg7 307 - 15 307 110133 12 0 1 153 1 0 126 chain 24413 chr9 141213431 + 94431204 94431501 AluSg 306 + 5 303 108012 185 0 1 112 chain 288252 chr9 141213431 + 94431933 94435694 L1PA8 5853 - 9 4847 14147 84 1 0 19 2 1 17 0 11 10 0 7 7 8 0 5 2 1 74 2 0 44 2 1 336 1 4 212 0 2 143 0 1089 20 0 2 67 4 7 68 5 0 134 0 1 29 1 0 49 18 11 316 0 1 36 14 15 85 1 2 19 3 1 52 1 0 267 0 1 258 1 0 80 0 1 229 21 1 116 1 3 170 0 2 76 0 1 210 0 1 155 0 1 55 8 6 223 chain 23357 chr9 141213431 + 94442094 94442403 AluSc 308 - 1 308 113887 29 1 0 127 11 11 9 2 0 17 0 1 113 chain 32872 chr9 141213431 + 94456920 94457413 MER1A 529 + 0 529 79416 18 1 26 36 6 15 23 16 17 304 14 21 6 6 0 63 chain 15517 chr9 141213431 + 94468024 94468241 MER2 342 - 6 225 139835 138 0 1 21 12 13 46 chain 4433 chr9 141213431 + 94479118 94479174 LTR12F 595 + 147 211 201554 30 0 8 26 chain 23649 chr9 141213431 + 94483958 94484250 AluSc8 310 + 11 306 112315 120 0 4 126 0 1 39 2 0 5 chain 23207 chr9 141213431 + 94504300 94504684 THE1A 353 - 12 353 114656 16 1 0 109 1 0 14 1 0 61 19 23 10 1 0 37 44 1 70 chain 5208 chr9 141213431 + 94510184 94510315 L1MA8 2339 + 2105 2214 192932 14 17 0 40 8 6 29 9 6 14 chain 23058 chr9 141213431 + 94511032 94511335 AluSq 315 + 0 298 115365 77 0 6 50 0 2 57 0 1 92 14 0 13 chain 6119 chr9 141213431 + 94525229 94525326 L1PA15 4387 + 4270 4366 184281 44 3 1 12 0 1 15 0 1 12 1 0 10 chain 13548 chr9 141213431 + 94544765 94544974 MER30 238 - 0 238 146177 46 3 0 49 3 5 22 2 17 20 0 6 42 6 15 16 chain 12387 chr9 141213431 + 94574240 94574412 MER30 238 - 8 191 150684 100 3 0 16 8 22 45 chain 10937 chr9 141213431 + 94624995 94625143 MLT1A 405 + 219 401 156458 29 3 36 26 0 1 90 chain 6875 chr9 141213431 + 94633798 94634098 MLT1G1 539 + 9 296 178398 50 198 184 26 0 1 26 chain 4881 chr9 141213431 + 94673521 94673703 Tigger3a 397 - 23 238 196480 24 89 116 37 12 18 20 chain 5787 chr9 141213431 + 94695968 94696032 L1MB5 1630 + 1326 1390 187302 64 chain 24330 chr9 141213431 + 94723837 94724136 AluSc 308 + 0 297 108486 20 10 6 246 0 2 23 chain 5167 chr9 141213431 + 94733882 94733947 MLT1B 390 + 10 73 193379 20 2 0 43 chain 50899 chr9 141213431 + 94735261 94735956 L1PA11 4918 + 3836 4517 58371 71 2 1 10 0 1 386 0 1 25 6 1 61 2 1 13 3 1 64 2 0 17 2 1 18 4 0 9 chain 9120 chr9 141213431 + 94736630 94736773 MLT1A 405 - 253 397 164970 21 5 4 4 0 1 4 1 0 14 4 6 90 chain 29568 chr9 141213431 + 94742840 94743180 HERV17-int 4347 + 2537 2878 86352 181 0 1 159 chain 27879 chr9 141213431 + 94744035 94744359 LTR17 781 + 0 324 93420 324 chain 23252 chr9 141213431 + 94802763 94803064 AluSg 306 + 5 305 114433 39 14 13 248 chain 10100 chr9 141213431 + 94807675 94807790 L1PA2 6032 + 5916 6032 160091 64 0 1 51 chain 20251 chr9 141213431 + 94818518 94818806 AluSg7 307 - 14 306 126379 26 1 3 124 8 9 72 6 7 51 chain 5383 chr9 141213431 + 94826510 94826576 L1MD1 2063 + 1568 1634 191156 66 chain 565042 chr9 141213431 + 94844524 94850673 L1PA3long 6157 - 0 6151 204 147 0 1 2062 0 1 3940 chain 40687 chr9 141213431 + 94860308 94860767 HERV-Fc1_LTR3 475 + 0 475 68315 132 0 13 259 0 3 68 chain 26352 chr9 141213431 + 94877962 94878261 AluSp 311 - 12 311 98607 299 chain 5673 chr9 141213431 + 94907374 94907442 U13_ 108 - 13 81 188358 68 chain 11946 chr9 141213431 + 94966401 94966548 MLT1B 390 + 243 390 152421 147 chain 550428 chr9 141213431 + 94976690 94982694 L1PA2 6032 + 0 6014 1388 72 1 2 183 1 0 3975 0 4 462 1 0 167 0 5 308 0 1 707 0 1 127 chain 121866 chr9 141213431 + 94989089 94990425 SVA_D 2077 - 1 1833 30425 534 0 225 210 1 232 110 0 40 481 chain 3353 chr9 141213431 + 95021718 95021777 MER20 218 + 119 187 217999 25 7 16 27 chain 43544 chr9 141213431 + 95073573 95074274 L1PA15 4387 + 3612 4295 64748 8 0 1 91 4 1 100 2 0 20 12 8 18 3 4 18 5 6 18 3 2 26 1 0 171 1 0 81 1 0 21 4 0 7 9 8 35 17 14 25 chain 4884 chr9 141213431 + 95075613 95075674 MER58C 217 - 4 67 196440 31 0 2 30 chain 73777 chr9 141213431 + 95102794 95103840 MER11C 1089 + 0 1063 46631 247 0 9 7 0 1 53 0 4 65 1 0 130 0 1 15 71 70 88 1 5 4 1 0 38 6 7 120 1 2 54 10 9 134 chain 30092 chr9 141213431 + 95114829 95115210 MLT2A1 477 - 92 477 84513 212 1 5 168 chain 128588 chr9 141213431 + 95115210 95116799 HERVL-int 5654 - 0 1625 28421 75 0 2 18 0 3 329 0 1 801 0 1 171 0 1 35 12 32 27 0 1 35 5 0 56 7 18 9 0 1 9 chain 82802 chr9 141213431 + 95117015 95119184 MER11A 1151 - 0 1144 42418 163 6 7 60 0 1 37 17 48 145 5 6 24 2 0 121 1 2 44 961 0 52 0 1 144 8 4 62 1 0 52 8 0 31 0 5 31 1 3 36 92 0 65 chain 3917 chr9 141213431 + 95124349 95124392 L1MC4 1079 - 198 241 208586 43 chain 10103 chr9 141213431 + 95129750 95129890 Tigger4 2445 + 1931 2059 160077 19 12 0 109 chain 17663 chr9 141213431 + 95139336 95139576 LTR9 672 - 424 672 133794 58 14 22 168 chain 5167 chr9 141213431 + 95144724 95144779 L1MA5A 2387 - 102 157 193382 55 chain 7180 chr9 141213431 + 95202537 95202628 MER30 238 - 13 101 176205 32 3 0 56 chain 23076 chr9 141213431 + 95204860 95205144 AluY 311 + 11 296 115268 61 0 3 58 2 0 163 chain 320144 chr9 141213431 + 95212394 95215895 L1PA3long 6157 - 15 3515 12591 1477 1 0 2023 chain 11502 chr9 141213431 + 95215895 95216020 L1PA3long 6157 + 2515 2640 153539 125 chain 10910 chr9 141213431 + 95260594 95260718 L1PA4 6152 + 6004 6128 156551 124 chain 45029 chr9 141213431 + 95285685 95286218 LTR14 556 - 0 534 63022 61 0 1 472 chain 2903 chr9 141213431 + 95292505 95292562 L1MC1 2226 + 2128 2184 226991 11 1 0 4 0 1 6 6 5 29 chain 3687 chr9 141213431 + 95308074 95308439 LTR12C 1709 + 875 1117 212139 34 111 110 14 162 0 12 6 47 19 1 0 6 chain 23795 chr9 141213431 + 95311657 95311955 AluSz 310 + 11 309 111503 298 chain 349142 chr9 141213431 + 95313823 95319921 L1PB1 5432 - 8 4784 11632 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 22 21 9 16 1 0 43 1 0 15 3 2 53 2 0 8 386 56 51 1 0 5 0 1 424 0 1 140 0 5 73 74 0 330 0 5 336 13 6 245 0 4 89 0 4 173 316 8 119 328 0 64 41 18 168 321 4 74 6 0 263 5 0 114 0 4 60 1 2 19 0 1 316 3 1 11 0 1 19 19 76 391 72 83 179 21 23 39 0 8 498 chain 15465 chr9 141213431 + 95327477 95327679 MER30 238 - 1 213 139999 82 1 2 45 0 10 30 1 0 43 chain 531905 chr9 141213431 + 95330353 95336496 L1PA5 6144 - 0 6144 3972 30 16 0 529 0 1 289 0 4 149 1 2 383 0 1 558 1 2 151 5 7 868 1 0 850 15 7 880 1 0 204 1 0 60 10 1 653 0 1 346 3 15 19 0 14 120 chain 306058 chr9 141213431 + 95340084 95343438 L1PA3long 6157 - 1 3356 13169 2967 0 1 387 chain 7887 chr9 141213431 + 95354247 95354334 L1PA4 6152 + 6053 6140 171751 87 chain 23576 chr9 141213431 + 95424525 95424818 AluSp 311 + 0 295 112704 125 2 1 63 0 3 103 chain 22636 chr9 141213431 + 95441019 95441303 AluSq2 311 + 0 302 117393 133 0 1 13 0 18 114 1 0 23 chain 4495 chr9 141213431 + 95443755 95443805 MLT2B4 540 + 70 120 200844 50 chain 18459 chr9 141213431 + 95456254 95456612 L1PA13 3608 - 123 469 131620 20 1 0 17 1 0 7 11 9 36 3 1 4 1 0 35 1 0 18 19 19 46 10 8 7 4 0 58 14 17 23 1 0 21 chain 24281 chr9 141213431 + 95458374 95458639 L1PA4 6152 - 9 274 108764 265 chain 82262 chr9 141213431 + 95516866 95517917 MER11C 1089 + 6 1073 42650 240 0 9 62 0 4 47 1 0 17 1 0 178 16 15 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 125 0 1 16 0 1 10 chain 14299 chr9 141213431 + 95531116 95531300 MER41B 635 + 0 185 143566 125 1 2 58 chain 23825 chr9 141213431 + 95538891 95539178 AluYk4 311 + 0 302 111337 102 0 18 44 3 0 138 chain 15515 chr9 141213431 + 95545705 95545900 LOR1b 457 - 24 222 139839 46 0 3 149 chain 25348 chr9 141213431 + 95546742 95547038 AluY 311 + 1 302 102967 71 0 3 57 0 1 67 0 1 101 chain 34038 chr9 141213431 + 95562114 95562559 L1PA8 5853 + 5403 5853 77565 118 0 2 39 1 0 46 2 0 70 2 1 12 1 0 45 6 5 19 1 0 37 0 10 46 chain 20556 chr9 141213431 + 95582891 95583129 L1PA4 6152 - 0 243 125451 6 0 5 232 chain 152895 chr9 141213431 + 95592356 95594734 SVA_D 2077 - 9 2019 24243 630 0 97 146 0 1 18 2 140 6 1 0 78 1 36 13 2 0 17 636 0 125 3 0 34 5 8 661 chain 3735 chr9 141213431 + 95593270 95593330 SVA_D 2077 - 1008 1079 122685 1 0 1 15 12 22 32 chain 3365 chr9 141213431 + 95593348 95593409 SVA_F 1814 - 776 837 144130 61 chain 29903 chr9 141213431 + 95593415 95593817 SVA_F 1814 - 578 965 85082 49 1 0 225 55 41 34 0 1 31 1 0 6 chain 3624 chr9 141213431 + 95593690 95593745 SVA_F 1814 - 725 780 130001 55 chain 7406 chr9 141213431 + 95613600 95613714 MER58B 340 + 79 199 174738 19 1 2 6 0 2 67 2 5 19 chain 69846 chr9 141213431 + 95628522 95629909 L1PA8 5853 + 4943 5853 48458 44 2 0 20 0 2 555 1 0 44 2 0 53 1 0 4 0 1 13 1 0 6 5 4 11 2 1 59 472 1 92 chain 24389 chr9 141213431 + 95634229 95634539 AluSp 311 + 0 308 108143 46 6 5 73 1 0 184 chain 7870 chr9 141213431 + 95634705 95634794 AluSp 311 + 215 304 171867 89 chain 24373 chr9 141213431 + 95643617 95643902 AluY 311 + 8 294 108233 124 0 1 161 chain 545516 chr9 141213431 + 95662381 95668348 L1PA3long 6157 - 164 6152 2007 371 0 1 313 0 5 1045 0 1 260 0 2 539 0 2 1060 0 4 358 0 6 2021 chain 4850 chr9 141213431 + 95671168 95671227 MER75B 242 + 51 110 196788 59 chain 3347 chr9 141213431 + 95671417 95671452 MER1B 344 + 231 266 218096 35 chain 37435 chr9 141213431 + 95708505 95708991 MER9a3 513 - 0 513 72917 79 0 1 21 1 0 135 1 25 141 13 14 71 6 8 18 chain 12337 chr9 141213431 + 95744935 95745085 MER41-int 2638 - 1369 1518 150871 55 0 1 84 2 0 9 chain 527737 chr9 141213431 + 95755748 95761870 L1PA5 6144 - 3 6144 4426 6 4 0 841 1 0 189 6 0 1430 2 0 268 1 0 133 0 3 95 1 0 598 0 2 262 0 2 468 1 6 669 9 0 296 0 5 680 23 35 18 1 15 120 chain 6839 chr9 141213431 + 95762182 95762379 L1M4c 1769 - 27 222 178659 13 1 0 36 0 1 4 1 0 9 72 73 15 2 0 18 1 0 4 0 1 21 chain 24256 chr9 141213431 + 95780632 95781028 LOR1b 457 - 24 442 108908 13 7 8 23 0 3 21 0 1 7 6 15 142 1 0 42 12 10 16 9 10 30 1 0 45 4 15 17 chain 9319 chr9 141213431 + 95782851 95783089 MER57B2 428 - 0 244 163966 37 1 3 14 95 79 26 0 20 65 chain 43075 chr9 141213431 + 95833418 95833964 MLT2A2 560 - 0 560 65328 147 0 11 30 0 3 189 1 0 39 0 1 140 chain 3421 chr9 141213431 + 95841481 95841521 MER58A 224 + 45 85 216753 40 chain 21410 chr9 141213431 + 95908954 95909315 THE1B 368 + 0 368 122473 111 5 6 50 70 75 100 0 1 25 chain 23432 chr9 141213431 + 96034747 96035038 AluSp 311 + 10 300 113467 35 8 7 248 chain 15535 chr9 141213431 + 96048714 96049196 L1MB1 2102 + 1522 2002 139783 52 101 99 38 0 1 27 63 60 54 5 7 15 1 0 12 57 58 57 chain 20882 chr9 141213431 + 96101589 96101953 THE1D 372 + 0 360 124347 40 15 7 19 23 24 76 31 36 23 1 0 33 1 0 102 chain 39730 chr9 141213431 + 96109869 96110320 LTR7 482 + 1 482 69711 232 1 0 13 1 32 204 chain 294457 chr9 141213431 + 96110322 96113931 HERVH-int 3825 + 0 3824 13737 489 0 56 25 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 4 42 26 22 0 26 22 0 5 41 0 49 1 0 444 15 0 462 12 39 1396 4 214 19 20 18 453 chain 39085 chr9 141213431 + 96115181 96115618 LTR7 482 + 0 474 70624 230 0 31 66 0 6 141 chain 84251 chr9 141213431 + 96122820 96123882 MER4-int 2692 + 189 1251 41799 17 0 1 136 5 3 317 19 18 251 1 0 265 4 7 47 chain 10426 chr9 141213431 + 96131147 96131318 L1MA3 4352 - 0 162 158575 20 8 4 11 1 0 29 1 0 6 1 0 23 2 0 69 chain 6594 chr9 141213431 + 96137837 96137913 U6 107 + 0 76 180502 76 chain 11117 chr9 141213431 + 96149761 96150219 L1MC1 2226 - 52 484 155745 19 7 6 14 1 0 6 9 0 7 1 0 18 71 57 51 165 155 49 7 17 33 chain 19473 chr9 141213431 + 96157365 96157604 MSTA-int 1630 - 1372 1614 128743 143 0 3 96 chain 17824 chr9 141213431 + 96160338 96160676 THE1B 368 + 0 342 133327 92 3 6 66 78 80 62 7 6 30 chain 70521 chr9 141213431 + 96172260 96173232 L1MA3 4352 - 481 1468 48148 90 1 2 117 8 10 94 0 1 113 1 0 46 2 1 117 4 8 83 4 9 210 0 4 82 chain 2592 chr9 141213431 + 96195035 96195146 MER33 330 - 148 258 231794 15 67 66 29 chain 36343 chr9 141213431 + 96198308 96198905 LTR10E 629 - 9 629 74441 50 25 22 15 1 0 157 1 0 47 5 4 12 5 3 13 2 1 37 22 1 84 26 79 95 chain 25607 chr9 141213431 + 96206896 96207195 AluSp 311 - 14 311 101689 14 2 0 283 chain 4478 chr9 141213431 + 96221985 96222037 MER20 218 + 33 85 201034 52 chain 6949 chr9 141213431 + 96224029 96224114 Tigger4a 237 + 37 122 177825 85 chain 25626 chr9 141213431 + 96241372 96241644 AluYa5 310 - 3 275 101601 272 chain 8008 chr9 141213431 + 96324263 96324372 MER85 139 + 8 139 170999 65 4 26 40 chain 32064 chr9 141213431 + 96379890 96380310 MLT2A1 477 - 2 464 80745 37 0 1 10 0 46 76 0 1 93 1 0 38 10 5 155 chain 69186 chr9 141213431 + 96495501 96496550 L1PA13 3608 + 1392 2429 48724 5 0 1 75 56 57 120 0 1 128 9 2 7 0 8 143 1 0 23 1 5 33 10 9 96 1 8 131 44 20 157 1 0 8 chain 57545 chr9 141213431 + 96499440 96500173 L1PA8 5853 + 5125 5853 54213 167 0 2 270 1 0 46 2 0 68 20 18 44 2 1 17 4 3 92 chain 68845 chr9 141213431 + 96501695 96502471 L1PA5 6144 - 5 777 48877 584 4 0 188 chain 6017 chr9 141213431 + 96504574 96504705 MER21B 843 - 73 217 185078 13 7 8 6 4 0 13 0 1 8 20 35 60 chain 44766 chr9 141213431 + 96513345 96513856 MER9a2 513 - 0 512 63318 499 0 1 12 chain 237355 chr9 141213431 + 96513857 96516805 HERVK9-int 4720 - 0 4684 16918 60 4 10 90 3 0 134 1 3 1074 0 815 113 0 925 512 0 1 222 0 1 201 0 1 13 19 11 223 0 1 147 2 1 29 1 0 9 1 0 43 0 2 21 1 0 4 8 5 13 chain 43437 chr9 141213431 + 96517582 96518095 MER9a2 513 - 0 513 64887 513 chain 25755 chr9 141213431 + 96518398 96518813 L1PBb 2709 - 121 512 101060 34 1 0 32 1 0 4 46 30 64 15 9 218 chain 10459 chr9 141213431 + 96528534 96528665 L1MC2 1988 + 1445 1576 158439 131 chain 7742 chr9 141213431 + 96533947 96534039 L1PA16 3655 + 3486 3578 172651 92 chain 3622 chr9 141213431 + 96544330 96544376 L1MB4 1306 - 541 587 213301 46 chain 16801 chr9 141213431 + 96552961 96553339 MSTA 426 - 0 426 136113 59 0 1 49 77 112 35 35 42 15 18 23 90 chain 153679 chr9 141213431 + 96565499 96567333 L1PA7 6471 + 4605 6467 24129 281 0 30 181 1 2 518 1 0 545 2 0 305 chain 116189 chr9 141213431 + 96567365 96569033 L1PA8A 6298 + 4782 6291 32378 440 2 1 15 8 0 112 0 15 88 0 21 12 29 8 62 50 3 11 1 3 361 0 6 70 0 3 113 138 9 156 chain 231035 chr9 141213431 + 96601630 96604202 L1PA4 6152 - 1 2571 17252 589 3 2 895 1 0 1084 chain 27061 chr9 141213431 + 96604202 96604504 L1PA4 6152 + 3312 3616 96076 49 0 2 253 chain 9419 chr9 141213431 + 96616115 96616302 L1PA17 2846 - 153 335 163470 17 1 0 27 14 13 4 1 0 28 14 14 57 1 0 11 1 0 11 chain 5888 chr9 141213431 + 96636382 96636468 L1M4c 1769 - 1158 1240 186288 4 1 0 28 3 0 50 chain 6452 chr9 141213431 + 96640607 96640686 MLT1B 390 + 294 373 181622 79 chain 7355 chr9 141213431 + 96642658 96642761 LTR12C 1709 + 928 1072 175059 55 1 42 47 chain 60155 chr9 141213431 + 96643690 96644530 LTR12C 1709 + 773 1709 52748 37 5 45 171 4 92 97 47 16 82 9 8 105 0 1 198 1 0 84 chain 13675 chr9 141213431 + 96644531 96644726 LTR43 600 - 238 437 145690 74 9 11 61 2 0 22 0 4 27 chain 3664 chr9 141213431 + 96650916 96650966 L1MC3 1789 + 1270 1317 212499 41 3 0 6 chain 43422 chr9 141213431 + 96689087 96689630 L1PA8 5853 - 0 536 64905 26 1 0 65 3 2 19 2 1 58 1 0 70 14 12 38 1 0 245 chain 35224 chr9 141213431 + 96701912 96702393 LTR12F 595 + 0 555 75895 100 0 85 25 14 5 86 8 6 16 0 1 66 2 0 88 1 2 75 chain 176351 chr9 141213431 + 96731826 96736601 HERVL-int 5654 + 0 2180 21321 98 0 10 7 320 1 838 0 1 132 2295 0 571 0 4 234 1 9 234 5 1 40 chain 27278 chr9 141213431 + 96733226 96733581 THE1A 353 - 0 353 95346 151 1 0 92 1 0 87 1 0 4 0 1 18 chain 126425 chr9 141213431 + 96733593 96735161 THE1A-int 1579 - 13 1579 28964 4 1 0 469 10 18 258 14 3 139 6 7 162 2 1 478 10 12 15 chain 26756 chr9 141213431 + 96735161 96735516 THE1A 353 - 0 353 97141 18 3 0 5 1 4 128 1 0 88 4 3 107 chain 43125 chr9 141213431 + 96748477 96749032 LTR10A 586 + 0 565 65264 13 0 1 96 0 8 92 1 2 318 0 1 4 1 0 30 chain 558032 chr9 141213431 + 96782623 96788777 L1PA3long 6157 - 0 6157 497 1597 1 0 556 0 1 56 0 1 135 0 1 1261 1 0 1562 0 1 105 0 2 873 1 0 6 chain 511408 chr9 141213431 + 96807137 96813642 L1PA4 6152 - 11 6152 6034 531 1 7 8 6 0 1656 0 1 315 680 321 981 3 1 7 1 0 9 0 4 191 12 3 1272 0 1 582 0 1 250 chain 60754 chr9 141213431 + 96809654 96810334 L1PA4 6152 + 2942 3622 51855 680 chain 6407 chr9 141213431 + 96817960 96818040 L1PA6 6164 + 6080 6161 181967 72 0 1 8 chain 550332 chr9 141213431 + 96851364 96857385 L1PA2 6032 - 4 6031 1402 251 1 2 1648 1 0 337 1 0 2251 0 1 495 0 3 300 0 4 480 1 0 255 chain 566812 chr9 141213431 + 96875817 96881847 L1HS 6032 - 0 6031 99 2988 0 1 3042 chain 42394 chr9 141213431 + 96899392 96899932 MER41A 554 + 0 547 66158 24 1 0 170 0 2 6 1 2 264 12 17 62 chain 6287 chr9 141213431 + 96901494 96901593 MER50 708 - 608 708 182908 38 15 16 46 chain 12376 chr9 141213431 + 96954151 96954334 MSTA 426 - 242 426 150729 13 20 0 10 0 20 112 0 1 28 chain 164312 chr9 141213431 + 96954334 96957354 L1PB3 3668 - 1202 3592 22769 65 0 1 56 0 1 226 3 1 6 14 0 9 6 5 99 292 0 226 1 0 10 0 1 5 12 11 337 10 2 13 0 1 168 1 2 9 3 0 6 3 2 106 20 21 20 13 19 6 6 0 50 2 7 69 1 0 26 9 8 30 5 0 8 10 20 5 1 0 97 0 1 79 308 0 337 0 3 28 2 1 28 6 10 88 3 0 10 4 2 13 8 1 9 7 0 26 chain 32675 chr9 141213431 + 96966786 96967290 LTR12F 595 + 0 595 79724 79 2 112 19 16 7 125 0 1 43 14 5 16 24 23 62 7 6 97 chain 532701 chr9 141213431 + 96979025 96985162 L1PA5 6144 + 0 6144 3886 263 7 6 900 9 0 1124 9 8 1381 2 0 273 0 4 344 1 0 42 0 2 198 1 0 749 1 0 43 6 7 466 0 1 14 0 1 105 0 3 47 13 15 97 0 9 42 chain 42231 chr9 141213431 + 96987627 96988217 LTR12F 595 + 6 595 66361 73 1 0 24 1 2 24 43 1 15 2 0 28 0 42 173 0 1 206 chain 4675 chr9 141213431 + 96997411 96997463 LTR12_ 688 + 0 52 198813 52 chain 37574 chr9 141213431 + 97001515 97002177 L1PB1 5432 - 34 660 72718 7 1 0 21 1 0 20 96 77 35 2 1 16 2 1 51 2 0 10 2 0 3 2 0 10 2 1 11 1 0 20 3 0 5 11 10 128 1 0 199 chain 87088 chr9 141213431 + 97002891 97003894 L1PA4 6152 + 5134 6143 40741 328 4 5 434 0 4 96 4 5 137 chain 30280 chr9 141213431 + 97005807 97006324 L1PA13 3608 - 61 550 83996 12 1 0 10 15 8 15 6 1 10 6 3 21 2 1 18 2 0 4 2 0 45 8 6 6 1 0 41 14 13 60 2 0 38 0 1 75 1 0 26 2 1 74 chain 8263 chr9 141213431 + 97007554 97010088 L1MDa 1598 + 844 1438 169605 67 2266 308 60 14 20 20 70 82 37 chain 4698 chr9 141213431 + 97007980 97008038 U6 107 + 46 104 198552 58 chain 24547 chr9 141213431 + 97011852 97012144 AluY 311 + 10 303 107267 122 0 1 170 chain 32430 chr9 141213431 + 97012895 97013382 LTR3A 482 + 0 478 80152 109 0 1 5 0 1 112 57 47 121 8 7 4 1 0 35 0 1 35 chain 48367 chr9 141213431 + 97027427 97028553 PABL_A 660 - 0 660 60203 120 12 16 9 308 0 28 0 4 298 191 1 91 1 10 44 1 16 23 chain 78480 chr9 141213431 + 97029361 97030789 PABL_A-int 1935 - 168 1290 44281 40 1 0 24 8 9 172 29 30 211 12 17 88 1 0 9 10 13 169 326 3 24 0 3 69 0 1 65 3 8 167 chain 52022 chr9 141213431 + 97031870 97032483 PABL_A 660 - 0 625 57611 298 1 2 56 0 1 193 0 1 19 0 9 46 chain 12909 chr9 141213431 + 97036807 97036977 MER47B 469 - 0 168 148599 65 2 0 103 chain 8955 chr9 141213431 + 97036979 97037088 MER4E 760 - 105 211 165854 41 3 0 65 chain 55702 chr9 141213431 + 97039177 97039931 MER4E 760 - 0 747 55305 155 12 17 55 2 0 6 3 0 33 7 0 48 1 0 83 0 2 58 9 7 120 22 25 127 2 0 11 chain 41644 chr9 141213431 + 97042830 97043352 LTR10A 586 - 21 586 67097 150 0 1 117 0 1 14 19 60 222 chain 5995 chr9 141213431 + 97043731 97043798 MER4A1 472 - 0 67 185294 67 chain 61044 chr9 141213431 + 97043804 97044566 MER4E 760 - 5 760 52311 267 0 4 193 20 16 10 0 1 98 7 0 149 1 0 17 chain 25567 chr9 141213431 + 97067722 97068029 AluY 311 + 0 311 101885 116 0 6 4 0 1 168 3 0 16 chain 3280 chr9 141213431 + 97110853 97111121 LTR26E 604 - 61 321 219364 17 151 138 24 50 55 26 chain 48179 chr9 141213431 + 97113907 97114857 MER41B 635 - 0 635 60338 69 8 9 46 315 0 43 9 7 331 1 2 128 chain 53600 chr9 141213431 + 97130963 97131597 L1PA6 6164 - 8 695 56613 192 0 50 356 0 3 86 chain 5498 chr9 141213431 + 97143831 97143968 L1ME1 1623 - 219 367 190051 28 54 63 35 0 2 20 chain 43822 chr9 141213431 + 97160525 97161084 PABL_A 660 - 0 573 64426 156 4 5 54 0 8 142 0 1 15 0 1 77 0 3 111 chain 39542 chr9 141213431 + 97163999 97164545 MER41A 554 - 1 554 69970 39 20 16 17 8 13 84 0 1 74 0 1 181 1 5 7 1 0 61 0 1 53 chain 18999 chr9 141213431 + 97203459 97203838 MSTA 426 - 2 390 130114 93 23 31 20 30 49 11 27 6 8 4 0 56 16 22 24 0 1 67 chain 151124 chr9 141213431 + 97231477 97233225 L1PA4 6152 - 2 1711 24458 5 0 2 834 0 7 268 55 0 167 0 1 289 0 6 130 chain 77350 chr9 141213431 + 97234046 97235122 MER11B 1079 - 0 1079 44802 29 7 6 125 0 2 28 4 5 16 0 1 41 11 14 43 1 3 25 10 0 194 6 5 4 0 1 101 12 11 65 3 6 300 0 3 51 chain 12179 chr9 141213431 + 97247398 97247682 AluSc5 308 - 12 169 151499 129 127 0 28 chain 17052 chr9 141213431 + 97268371 97268556 L1PA5 6144 + 5371 5556 135452 185 chain 50631 chr9 141213431 + 97268591 97269173 L1PA5 6144 + 5556 6144 58556 329 1 0 114 0 7 138 chain 39188 chr9 141213431 + 97275696 97276182 LTR10D 510 - 0 510 70473 169 0 1 55 2 0 21 0 2 111 0 16 41 6 0 7 3 16 71 chain 25822 chr9 141213431 + 97276902 97277242 PABL_A 660 - 0 660 100783 60 2 1 23 0 318 71 0 3 184 chain 133594 chr9 141213431 + 97281242 97282763 L1PA5 6144 - 0 1525 27300 259 1 0 408 0 2 321 0 3 532 chain 3259 chr9 141213431 + 97289672 97289804 MER3 215 - 131 174 219787 12 89 0 31 chain 29401 chr9 141213431 + 97292029 97292339 AluYa5 310 - 0 310 87061 310 chain 30154 chr9 141213431 + 97292918 97293233 AluYb8 318 - 3 318 84321 315 chain 123532 chr9 141213431 + 97293723 97295204 L1PA7 6471 + 4775 6456 29867 54 0 1 125 2 0 336 0 190 141 0 8 63 0 1 4 0 2 246 0 1 190 1 0 319 chain 29201 chr9 141213431 + 97302152 97302579 LTR7B 505 + 0 503 88042 105 0 10 60 0 38 12 3 27 27 0 3 39 1 2 42 6 4 19 0 1 19 0 2 31 14 13 49 chain 290479 chr9 141213431 + 97302581 97306128 HERVH-int 3825 + 0 3825 13992 355 5 31 75 0 26 47 5 0 36 1 0 10 1 0 24 28 0 15 0 37 42 44 1 57 0 1 6 0 2 13 0 3 900 8 35 299 0 10 88 0 3 337 0 1 194 0 3 419 9 11 5 0 3 31 4 214 15 6 0 9 3 9 7 0 1 5 1 0 218 0 2 225 chain 27192 chr9 141213431 + 97307372 97307791 LTR7B 505 + 1 503 95617 30 16 18 45 0 3 8 0 10 60 0 38 12 3 27 28 0 2 8 0 4 22 2 3 46 1 0 23 0 1 52 14 13 49 chain 11399 chr9 141213431 + 97314606 97314740 MER85 139 - 0 139 154703 80 0 5 54 chain 43235 chr9 141213431 + 97328468 97328970 MER9a2 513 + 0 513 65131 378 0 2 27 0 9 97 chain 81586 chr9 141213431 + 97352746 97353904 LTR12E 1234 - 0 1158 42932 84 32 56 106 0 13 90 0 1 24 15 26 78 50 0 451 1 0 4 31 32 11 0 1 181 chain 27162 chr9 141213431 + 97382876 97383199 L1PA7 6471 + 6141 6464 95715 323 chain 24325 chr9 141213431 + 97403938 97404242 AluSp 311 + 12 310 108516 25 5 0 95 1 0 178 chain 32699 chr9 141213431 + 97412769 97413202 LTR7B 505 + 0 505 79689 108 0 10 57 0 38 14 0 24 27 0 2 85 1 0 76 14 13 51 chain 2930 chr9 141213431 + 97418486 97418542 MER57B2 428 - 0 57 226508 16 12 13 28 chain 4246 chr9 141213431 + 97443026 97443139 MLT1C 463 + 51 162 203921 37 48 46 28 chain 4095 chr9 141213431 + 97454416 97454462 MER58D 378 - 19 65 206015 46 chain 24706 chr9 141213431 + 97478975 97479266 AluSc 308 - 16 308 106398 67 0 1 224 chain 20050 chr9 141213431 + 97479917 97480272 THE1D 372 - 1 372 126978 116 1 0 6 10 16 23 20 22 62 0 8 11 36 23 10 0 14 60 chain 27434 chr9 141213431 + 97487988 97488284 AluYf4 310 - 14 310 94869 296 chain 4163 chr9 141213431 + 97491923 97491973 MER20 218 - 41 92 205058 45 0 1 5 chain 5482 chr9 141213431 + 97505374 97505442 MER41A 554 + 399 469 190204 9 0 2 59 chain 4979 chr9 141213431 + 97511657 97511726 L1MC3 1789 - 629 697 195375 52 1 0 16 chain 3362 chr9 141213431 + 97541346 97541383 MLT2B3 573 + 5 42 217846 37 chain 5122 chr9 141213431 + 97542364 97542510 MER58A 224 + 42 213 193857 32 38 56 13 17 25 41 1 0 4 chain 3881 chr9 141213431 + 97557208 97557271 MLT1I 406 + 336 400 209155 17 7 8 39 chain 24089 chr9 141213431 + 97559433 97559727 AluSc5 308 + 0 295 109806 169 4 5 121 chain 3814 chr9 141213431 + 97588052 97588125 MER131 149 + 25 100 210182 25 13 14 18 0 1 17 chain 19902 chr9 141213431 + 97593789 97594039 L1PA10 4194 - 52 299 127477 26 3 0 200 0 1 5 1 0 15 chain 10423 chr9 141213431 + 97594039 97594168 L1PA10 4194 + 3819 3949 156237 32 0 1 97 chain 73794 chr9 141213431 + 97599238 97600294 L1PB 1623 + 98 1141 46620 4 1 0 4 0 1 5 1 0 5 1 0 14 0 1 39 1 0 4 2 0 11 8 5 76 4 3 17 0 2 108 4 2 59 0 1 26 2 1 106 18 14 289 1 0 47 1 2 5 1 0 192 chain 24068 chr9 141213431 + 97610459 97610755 AluY 311 + 11 304 109934 16 4 0 105 0 1 171 chain 23058 chr9 141213431 + 97682302 97682616 AluSp 311 + 15 293 115363 36 37 0 19 0 1 222 chain 24290 chr9 141213431 + 97697285 97697686 MSTA 426 + 16 426 108705 78 15 20 15 2 0 72 30 28 7 2 0 5 0 1 50 10 19 115 chain 2979 chr9 141213431 + 97700115 97700149 MADE2 80 + 17 51 225465 34 chain 18360 chr9 141213431 + 97797280 97797508 L1PA6 6164 - 17 254 131908 24 3 12 201 chain 22784 chr9 141213431 + 97880005 97880299 AluSp 311 - 12 310 116656 112 6 8 54 1 0 102 0 3 19 chain 3527 chr9 141213431 + 97889699 97889744 MER1B 344 - 76 121 214920 45 chain 169295 chr9 141213431 + 97921318 97923247 L1PA6 6164 - 2 1936 22143 9 1 0 784 3 9 1132 chain 12822 chr9 141213431 + 97942422 97942620 Tigger3b 1229 - 703 892 148968 34 5 6 61 10 4 43 5 1 40 chain 3007 chr9 141213431 + 97955940 97955973 MADE1 96 - 2 35 224892 33 chain 110667 chr9 141213431 + 97981872 97983155 L1PA6 6164 + 4878 6160 34041 190 1 2 114 1 0 131 1 0 845 chain 47077 chr9 141213431 + 97992734 97993351 LTR12 884 - 15 884 61143 141 0 103 158 13 9 66 0 22 16 0 132 189 9 8 25 chain 536578 chr9 141213431 + 98016563 98022979 L1PA7 6471 + 0 6470 3368 409 0 3 266 12 34 482 0 11 383 1 17 154 2 1 71 7 0 329 0 5 383 0 3 330 0 1 214 0 4 267 0 1 129 1 0 123 1 3 119 11 1 283 0 1 1029 3 1 189 0 1 355 1 0 12 0 3 166 1 0 183 0 5 15 7 5 19 2 0 189 0 1 121 1 0 133 0 3 13 chain 29953 chr9 141213431 + 98032052 98032467 LTR5_Hs 974 - 0 974 84960 103 20 18 19 8 15 32 0 554 233 chain 53777 chr9 141213431 + 98036312 98036936 L1PA7 6471 - 5 628 56484 396 1 0 227 chain 24531 chr9 141213431 + 98064077 98064391 AluY 311 + 0 305 107369 123 7 3 172 5 0 7 chain 3969 chr9 141213431 + 98065471 98065521 MER3 215 + 116 166 207849 50 chain 23238 chr9 141213431 + 98080614 98080910 AluSc5 308 + 0 297 114504 130 9 7 51 0 3 106 chain 33386 chr9 141213431 + 98085977 98086436 MER4A1 472 - 14 472 78595 171 41 19 20 1 22 226 chain 205660 chr9 141213431 + 98086444 98089092 MER4-int 2692 - 0 2678 18811 16 1 0 45 6 7 293 3 20 40 0 1 254 1 0 538 0 2 20 1 0 260 0 3 261 0 1 140 6 19 139 0 2 28 13 8 344 5 9 24 1 2 98 3 0 19 1 0 9 1 0 54 2 0 22 chain 29226 chr9 141213431 + 98094170 98094907 MER4A1 472 - 0 442 87931 24 1 0 136 1 0 44 2 0 22 0 2 6 4 22 34 316 0 76 3 8 68 chain 7347 chr9 141213431 + 98121488 98121593 L1MB7 1623 + 1067 1175 175115 25 3 6 77 chain 12561 chr9 141213431 + 98149112 98149293 MER30 238 + 47 236 150004 55 12 23 68 3 0 43 chain 8990 chr9 141213431 + 98155283 98155396 Tigger7 736 + 37 150 165659 113 chain 386168 chr9 141213431 + 98162017 98167448 L1PB1 5432 + 36 5422 10569 61 36 49 160 1 0 227 20 13 16 4 0 6 1 5 46 28 32 61 0 1 5 1 0 43 18 16 269 16 15 167 0 2 177 5 3 294 2 0 165 0 1 177 3 0 160 3 0 187 1 0 36 1 2 60 2 0 170 1 5 175 1 0 165 5 0 8 0 1 87 3 4 135 1 0 8 0 1 262 0 1 62 0 1 75 6 7 53 40 23 278 1 0 432 1 0 4 1 2 72 0 4 100 0 2 138 3 5 76 1 0 239 93 81 52 20 18 43 1 0 15 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 22157 chr9 141213431 + 98189500 98189759 AluSz 310 + 6 266 119558 13 0 1 246 chain 23031 chr9 141213431 + 98215421 98215711 AluSg7 307 - 16 307 115488 164 0 1 7 12 13 36 1 0 70 chain 23742 chr9 141213431 + 98234039 98234330 AluSp 311 + 0 293 111820 71 1 2 37 1 2 181 chain 38766 chr9 141213431 + 98281336 98281959 LTR10E 629 + 0 620 71060 35 6 0 123 19 16 89 11 37 24 12 11 41 1 0 109 4 5 42 1 0 16 40 22 50 chain 9484 chr9 141213431 + 98285037 98285157 MLT1B 390 - 211 331 163143 120 chain 23362 chr9 141213431 + 98285698 98286048 THE1B 368 + 0 368 113858 64 0 13 87 1 0 5 1 0 20 6 11 9 1 5 18 9 7 129 chain 18600 chr9 141213431 + 98287953 98288171 AluY 311 + 39 258 131226 93 0 1 125 chain 3371 chr9 141213431 + 98334843 98334884 MER121 330 - 148 192 217657 6 0 3 35 chain 27211 chr9 141213431 + 98363569 98363876 AluYf5 307 + 0 307 95560 307 chain 11887 chr9 141213431 + 98390878 98391050 Tigger2a 444 + 184 361 152669 127 14 19 31 chain 36029 chr9 141213431 + 98426919 98427535 LTR12F 595 + 0 583 74864 103 0 1 43 4 92 21 89 0 22 31 7 100 1 0 168 8 0 26 chain 25904 chr9 141213431 + 98434237 98434598 L1PA16 3655 + 3231 3587 100418 59 2 0 191 1 7 7 6 0 83 3 0 9 chain 115058 chr9 141213431 + 98442431 98443811 LTR12C 1709 + 0 1709 32768 224 0 1 425 0 119 68 1 0 39 0 78 158 1 0 5 3 1 106 0 4 297 0 131 53 chain 34369 chr9 141213431 + 98450285 98450830 L1PA15 4387 + 3843 4366 77108 48 3 1 40 1 0 168 6 5 25 1 0 57 1 0 25 4 0 5 1 0 50 6 3 44 3 1 11 9 4 26 1 0 10 chain 23621 chr9 141213431 + 98457880 98458244 THE1D 372 + 0 357 112467 13 0 2 41 31 22 88 19 16 8 0 3 164 chain 565819 chr9 141213431 + 98459867 98465886 L1HS 6032 + 6 6032 169 680 0 3 5177 0 4 162 chain 10881 chr9 141213431 + 98479862 98480026 MER30 238 - 18 212 156659 28 3 0 64 12 45 57 chain 34648 chr9 141213431 + 98480395 98480864 LTR12F 595 - 7 595 76693 97 5 0 208 0 114 23 2 0 34 9 21 91 chain 5099 chr9 141213431 + 98526258 98526316 MER20 218 + 102 160 194092 58 chain 4924 chr9 141213431 + 98540117 98540190 MLT1J 494 - 326 400 195997 50 4 5 19 chain 5233 chr9 141213431 + 98566302 98566438 LTR12F 595 + 104 255 192699 21 8 24 28 17 8 16 19 27 27 chain 3305 chr9 141213431 + 98571570 98571683 LTR82B 718 - 44 156 218891 16 64 63 33 chain 11912 chr9 141213431 + 98595105 98595243 L1PA7 6471 + 6327 6465 152541 138 chain 35936 chr9 141213431 + 98609537 98610907 MER41A 554 + 0 554 74975 112 7 6 69 901 87 44 1 0 236 chain 4430 chr9 141213431 + 98622195 98622242 U2 167 + 6 53 201578 47 chain 27433 chr9 141213431 + 98633730 98634152 L1PB4 2604 - 74 494 94870 123 6 1 7 1 0 4 0 1 8 2 0 79 30 31 35 0 4 127 chain 67395 chr9 141213431 + 98640797 98641530 L1PA3long 6157 - 8 742 49488 141 1 0 278 0 2 313 chain 21105 chr9 141213431 + 98653232 98653507 AluSp 311 + 20 290 123539 151 1 0 95 9 5 19 chain 4813 chr9 141213431 + 98667317 98667370 5S 121 + 31 84 197192 53 chain 93584 chr9 141213431 + 98706932 98708009 MER11C 1089 - 10 1089 38481 27 2 1 46 0 2 782 0 1 220 chain 66506 chr9 141213431 + 98720171 98720924 L1PA3long 6157 - 10 786 49558 269 0 4 162 0 18 315 1 2 6 chain 99780 chr9 141213431 + 98720924 98722022 L1PA3long 6157 + 4260 5360 36834 430 2 0 620 0 4 46 chain 25291 chr9 141213431 + 98735694 98736055 THE1B 368 - 0 368 103266 47 5 15 106 2 0 12 24 23 165 chain 74597 chr9 141213431 + 98749469 98750445 THE1B-int 1605 - 5 1002 46212 242 1 0 101 1 0 278 2 0 225 41 66 85 chain 24761 chr9 141213431 + 98762177 98762468 AluSc5 308 - 15 308 106106 19 0 2 272 chain 120770 chr9 141213431 + 98763135 98764565 LTR12C 1709 - 0 1709 30771 481 1 5 106 4 2 4 1 0 103 0 278 416 1 0 4 5 7 6 1 0 297 chain 29192 chr9 141213431 + 98792291 98793076 LTR12F 595 + 0 593 88086 101 0 1 21 28 92 35 24 0 37 7 71 32 8 0 117 301 0 23 9 21 42 chain 88685 chr9 141213431 + 98838419 98839424 LTR13 1007 + 0 1007 40116 73 2 0 231 1 0 43 0 1 452 0 2 123 0 2 80 chain 43272 chr9 141213431 + 98863729 98864280 MER41A 554 + 0 554 65087 82 10 11 131 0 1 78 5 6 245 chain 18808 chr9 141213431 + 98882100 98882424 THE1B 368 - 26 368 130655 36 1 0 66 1 0 10 1 0 16 0 4 10 1 0 4 35 38 37 16 17 13 0 14 77 chain 15863 chr9 141213431 + 98910436 98910654 MER30 238 + 0 238 138767 103 8 28 107 chain 11089 chr9 141213431 + 98912497 98912670 MER44A 345 - 147 323 155853 46 6 7 40 6 8 75 chain 3007 chr9 141213431 + 98913223 98913313 L1MA4 2864 + 2726 2809 224886 12 6 0 22 30 29 20 chain 21474 chr9 141213431 + 98980957 98981217 AluSc 308 - 12 274 122235 21 0 2 239 chain 25352 chr9 141213431 + 98983368 98983673 AluSq10 312 - 8 312 102943 120 7 6 178 chain 27848 chr9 141213431 + 98994190 98994486 AluYa5 310 - 14 310 93531 296 chain 23407 chr9 141213431 + 99002227 99002520 L1PA8 5853 + 5566 5853 113612 42 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 8210 chr9 141213431 + 99003481 99003656 MER53 195 + 16 195 169891 52 38 40 22 12 14 51 chain 43752 chr9 141213431 + 99042901 99043440 MER41A 554 + 0 554 64503 314 0 1 72 3 11 28 0 1 41 0 5 81 chain 137652 chr9 141213431 + 99045615 99048161 MER41-int 2638 + 659 2636 26533 149 1 15 68 1 35 53 1 0 58 2 1 52 5 3 187 335 27 15 1 0 5 1 0 8 9 12 159 11 10 266 2 1 68 0 1 13 0 1 9 2 0 20 305 0 10 4 0 153 9 10 156 0 2 154 15 16 55 2 3 182 chain 39521 chr9 141213431 + 99048170 99049342 MER41A 554 + 0 554 69996 171 671 48 249 0 5 81 chain 9333 chr9 141213431 + 99080788 99080956 L1MB2 1706 + 859 1018 163887 32 12 8 4 1 0 29 4 5 56 5 0 25 chain 5417 chr9 141213431 + 99096378 99096436 MER1B 344 - 0 58 190826 58 chain 38718 chr9 141213431 + 99109933 99110462 MER41A 554 + 0 554 71125 162 34 57 99 0 1 53 1 0 24 0 1 141 0 1 15 chain 29541 chr9 141213431 + 99133997 99134307 AluYa5 310 - 0 310 86452 310 chain 25146 chr9 141213431 + 99136530 99136831 AluSc 308 + 0 296 104020 20 5 0 276 chain 17164 chr9 141213431 + 99170303 99170496 L1PA5 6144 + 5942 6136 135127 33 0 1 160 chain 44857 chr9 141213431 + 99183130 99183683 MER41A 554 + 0 554 63223 239 1 0 35 0 1 155 0 1 123 chain 4075 chr9 141213431 + 99200936 99201003 L1MC1 2226 + 1991 2047 206260 16 12 1 39 chain 23786 chr9 141213431 + 99234081 99234359 AluSp 311 - 21 300 111554 103 0 1 175 chain 25090 chr9 141213431 + 99247337 99247621 AluSp 311 - 15 300 104347 154 0 1 130 chain 6925 chr9 141213431 + 99274349 99274451 AluJb 308 + 131 234 177995 19 14 15 69 chain 24423 chr9 141213431 + 99289405 99289699 AluY 311 + 0 301 107946 66 0 6 54 0 1 174 chain 21800 chr9 141213431 + 99316169 99316470 AluSc8 310 + 4 306 121018 128 10 14 142 3 0 18 chain 20278 chr9 141213431 + 99325656 99325957 AluSp 311 + 4 303 126283 26 41 43 210 4 0 20 chain 7185 chr9 141213431 + 99336920 99337003 AluSp 311 + 225 308 176174 83 chain 47597 chr9 141213431 + 99344428 99345009 LTR10C 591 + 0 591 60767 245 4 12 258 0 2 74 chain 13786 chr9 141213431 + 99347505 99347709 L1PA8 5853 - 0 217 145314 36 0 17 40 1 0 19 2 1 52 1 0 9 6 5 38 chain 22008 chr9 141213431 + 99364097 99364368 AluY 311 + 38 310 120193 94 0 1 177 chain 2943 chr9 141213431 + 99364384 99364420 MLT1I 406 + 0 35 226252 25 1 0 10 chain 22261 chr9 141213431 + 99364690 99365027 THE1B 368 - 4 368 119065 54 0 4 57 30 51 29 1 0 89 1 0 24 1 2 16 0 3 35 chain 6356 chr9 141213431 + 99379405 99379481 LTR12E 1234 - 233 309 182338 76 chain 2857 chr9 141213431 + 99401709 99401766 Tigger2b_Pri 1066 - 1005 1066 227718 25 13 17 19 chain 25235 chr9 141213431 + 99407801 99408093 AluY 311 + 4 297 103559 120 2 3 170 chain 24321 chr9 141213431 + 99426104 99426415 AluYk4 311 - 13 311 108542 22 0 1 143 13 0 14 1 0 118 chain 43279 chr9 141213431 + 99432168 99432681 MER9a3 513 + 0 513 65080 18 0 1 237 1 0 116 1 0 40 1 0 4 0 1 69 0 1 26 chain 28383 chr9 141213431 + 99436018 99436445 LTR12F 595 - 77 589 91652 24 0 4 17 0 24 57 17 0 41 0 64 72 14 5 24 0 9 31 2 0 34 0 12 94 chain 129068 chr9 141213431 + 99439108 99440549 L1PA5 6144 + 4687 6135 28300 566 0 7 195 0 1 575 1 0 104 chain 24901 chr9 141213431 + 99449763 99450031 L1PA4 6152 - 1 269 105337 268 chain 46093 chr9 141213431 + 99455325 99455838 MER9a1 513 - 0 513 61951 513 chain 142020 chr9 141213431 + 99461929 99463764 LTR12C 1709 - 0 1709 25820 310 98 0 171 0 4 107 10 7 273 1 0 82 0 2 436 34 11 35 6 0 163 5 4 104 chain 4354 chr9 141213431 + 99462239 99462297 LTR12C 1709 - 208 266 146846 58 chain 81184 chr9 141213431 + 99469115 99470052 SVA_F 1814 - 0 1164 43096 633 1 49 4 1 0 118 0 63 10 2 0 50 1 2 30 1 0 28 2 122 41 5 4 10 chain 2727 chr9 141213431 + 99470052 99470101 SVA_F 1814 - 804 852 128402 16 1 0 32 chain 124756 chr9 141213431 + 99477331 99478803 SVA_B 1603 - 14 1572 29461 175 0 1 123 1 0 121 0 2 137 0 123 28 4 0 222 37 0 303 0 1 309 1 2 11 chain 12244 chr9 141213431 + 99498208 99498408 L1MB3 1562 - 672 891 151231 69 0 1 22 0 3 7 22 36 10 1 0 60 0 2 9 chain 12645 chr9 141213431 + 99502479 99502853 MSTB1 431 - 0 402 149657 15 3 4 78 160 169 23 13 29 49 2 4 31 chain 5584 chr9 141213431 + 99504863 99504929 THE1C 375 + 2 68 189238 66 chain 10385 chr9 141213431 + 99524292 99524475 L1PB1 5432 + 5255 5423 158762 25 1 0 16 6 1 30 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 26162 chr9 141213431 + 99549306 99550029 LTR72B 493 - 2 440 99359 33 7 2 35 5 0 35 22 45 117 316 7 96 0 8 34 0 3 23 chain 23378 chr9 141213431 + 99557466 99557777 THE1C 375 - 0 311 113770 32 11 10 146 0 1 122 chain 558316 chr9 141213431 + 99559287 99565454 L1PA3long 6157 + 1 6143 469 852 4 5 581 0 1 879 0 1 1019 30 0 288 0 1 318 0 1 595 0 1 1380 1 0 220 chain 246022 chr9 141213431 + 99586154 99588840 L1PA3long 6157 + 3462 6157 16446 1822 0 4 16 0 4 792 0 1 56 chain 7307 chr9 141213431 + 99593017 99593354 L1MDa 1598 + 406 783 175387 28 76 79 6 0 6 37 109 126 33 17 31 31 chain 61172 chr9 141213431 + 99617559 99618481 L1PB1 5432 - 12 901 52264 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 20 7 6 4 0 16 6 5 39 1 0 28 1 0 41 17 11 9 1 0 9 1 0 19 16 16 337 0 13 74 0 1 57 16 5 85 chain 122126 chr9 141213431 + 99627867 99629430 THE1B-int 1605 + 0 1598 30337 197 0 5 99 1 0 5 1 2 100 18 43 225 0 1 455 4 8 38 4 3 34 0 1 382 chain 24741 chr9 141213431 + 99629436 99629806 THE1B 368 + 0 368 106220 44 1 16 101 11 13 20 2 1 4 0 2 135 20 0 32 chain 4199 chr9 141213431 + 99648502 99648548 L1MDa 1598 + 1123 1169 204545 46 chain 52808 chr9 141213431 + 99649856 99650452 L1PA4 6152 + 5547 6143 57127 596 chain 23325 chr9 141213431 + 99653843 99654125 AluSg7 307 - 11 307 114058 169 0 1 49 0 13 64 chain 58690 chr9 141213431 + 99655636 99656635 L1PA5 6144 + 5460 6144 53585 149 1 0 203 314 0 332 chain 7999 chr9 141213431 + 99661784 99661887 MSTC 436 - 10 113 171071 103 chain 48104 chr9 141213431 + 99667338 99668288 MER41B 635 + 0 635 60399 127 1 2 332 9 7 43 315 0 49 5 6 69 chain 23094 chr9 141213431 + 99683540 99683837 AluSc8 310 + 10 300 115170 14 4 0 107 0 4 154 7 0 11 chain 25262 chr9 141213431 + 99708728 99709034 AluY 311 + 6 311 103402 127 1 0 178 chain 23593 chr9 141213431 + 99741246 99741557 AluY 311 + 0 308 112614 14 0 6 104 8 2 88 3 0 94 chain 39398 chr9 141213431 + 99748101 99748647 MER41A 554 + 0 553 70167 53 0 1 62 1 0 6 4 8 178 0 1 75 0 1 83 8 13 17 20 16 39 chain 49743 chr9 141213431 + 99751182 99752147 PABL_A 660 + 2 660 59198 85 321 0 111 0 3 77 0 1 15 0 1 142 0 8 54 4 5 156 chain 53995 chr9 141213431 + 99781066 99781700 L1PA6 6164 + 5469 6156 56368 86 0 3 356 0 50 192 chain 32093 chr9 141213431 + 99792718 99793170 MER9a3 513 - 0 477 80706 77 6 7 64 0 2 67 7 4 14 0 17 94 1 0 46 12 21 64 chain 37179 chr9 141213431 + 99814079 99814522 LTR19B 566 - 117 566 73265 330 0 1 19 0 5 94 chain 24310 chr9 141213431 + 99863828 99864121 AluSc 308 + 0 291 108601 8 1 0 249 1 0 34 chain 132624 chr9 141213431 + 99892019 99893568 SVA_A 1864 - 0 1846 27494 460 0 1 145 0 19 59 0 36 71 0 19 87 6 227 361 0 1 360 chain 3725 chr9 141213431 + 99903084 99903124 MSTA 426 - 329 369 211549 40 chain 5711 chr9 141213431 + 99905821 99905911 THE1-int 844 + 496 625 188006 60 9 48 21 chain 6690 chr9 141213431 + 99912937 99913137 MSTA-int 1630 - 21 225 179761 42 9 16 30 6 5 17 69 67 27 chain 20676 chr9 141213431 + 99936034 99936359 LTR76 689 + 365 681 125046 24 2 0 8 2 1 77 0 6 33 6 0 83 4 3 39 2 0 8 5 4 16 2 0 14 chain 554993 chr9 141213431 + 99967432 99973584 L1PA3long 6157 + 5 6157 828 200 7 1 840 1 0 45 11 14 391 0 1 177 0 1 718 0 1 3429 0 1 214 0 1 60 1 0 58 chain 41588 chr9 141213431 + 99976775 99977239 LTR7 482 + 0 474 67171 211 0 10 253 chain 257541 chr9 141213431 + 99977249 99980661 HERVH-int 3825 + 0 3120 15844 449 108 0 49 39 33 14 0 1 24 2 1 9 1 0 24 28 0 11 4 41 42 2 1 57 0 1 6 0 2 14 0 3 441 15 0 64 215 0 398 4 31 299 0 10 84 0 2 1009 chain 4100 chr9 141213431 + 99977742 99977793 HERVH-int 3825 + 449 498 205954 40 2 0 9 chain 43325 chr9 141213431 + 99981814 99982296 LTR7 482 + 0 482 65004 482 chain 8344 chr9 141213431 + 99991514 99991618 L1PB4 2604 + 2307 2411 169150 104 chain 73920 chr9 141213431 + 99994417 99995375 LTR5_Hs 974 + 0 960 46553 166 23 16 6 0 7 101 6 0 163 0 4 196 0 1 15 0 1 34 0 2 248 chain 3613 chr9 141213431 + 100031455 100031496 LTR76 689 + 229 270 213435 41 chain 27518 chr9 141213431 + 100033570 100033938 LTR12D 1347 - 967 1346 94607 44 0 36 98 2 0 14 28 5 182 chain 35522 chr9 141213431 + 100039125 100039561 MER4A1 472 - 0 472 75519 99 0 3 121 0 29 24 0 2 177 0 2 15 chain 3322 chr9 141213431 + 100042937 100042974 MLT1J2 417 - 333 370 218539 37 chain 3162 chr9 141213431 + 100046810 100046846 L1MA8 2339 - 143 179 221703 36 chain 28769 chr9 141213431 + 100049117 100049421 AluYb8 318 - 14 318 90023 304 chain 525736 chr9 141213431 + 100097467 100104591 L1PA6 6164 - 2 6164 4609 9 0 2 385 1 2 555 0 16 1240 0 1 428 1 0 257 0 3 79 0 1 601 0 4 274 0 1 298 0 1 986 1 0 63 1013 0 132 0 17 297 11 10 97 14 13 13 0 8 369 chain 89370 chr9 141213431 + 100102651 100103658 LTR13 1007 + 0 1007 39855 200 0 1 103 1 0 703 chain 29457 chr9 141213431 + 100133232 100133545 AluYb8 318 - 6 318 86816 186 1 0 126 chain 8630 chr9 141213431 + 100146214 100146445 MER21B 843 + 479 713 167583 9 5 0 50 79 72 34 13 28 41 chain 6907 chr9 141213431 + 100157132 100157219 MLT1B 390 + 23 110 178137 87 chain 30034 chr9 141213431 + 100163141 100163539 MLT2A1 477 - 0 431 84703 43 15 49 62 7 8 111 0 1 33 4 1 123 chain 14659 chr9 141213431 + 100187636 100187890 Tigger3a 397 + 139 396 142397 29 7 8 128 48 50 42 chain 12261 chr9 141213431 + 100213886 100214230 MER21B 843 + 471 827 151150 12 2 6 38 91 101 71 26 32 14 10 8 49 3 0 6 4 1 18 chain 3629 chr9 141213431 + 100215587 100215653 Tigger3b 1229 + 20 82 213183 21 14 10 31 chain 300737 chr9 141213431 + 100215900 100220392 L1PA8A 6298 + 2399 6291 13381 108 5 0 252 5 9 210 296 6 214 1 2 57 0 4 128 26 28 24 0 4 306 0 1 113 2 0 12 0 3 9 0 1 316 1 2 673 0 1 42 5 1 120 4 5 13 0 4 264 2 7 110 9 5 35 0 3 77 0 2 50 4 0 59 4 8 86 3 0 28 0 1 71 316 2 95 6 6 40 7 8 151 33 16 100 chain 90087 chr9 141213431 + 100255509 100256584 MER11B 1079 - 15 1079 39621 294 8 2 173 13 12 305 1 0 14 3 0 264 chain 95934 chr9 141213431 + 100260067 100261185 SVA_B 1603 - 342 1603 37839 210 9 8 34 1 0 5 0 120 20 1 0 12 1 0 656 1 0 151 0 28 17 chain 3746 chr9 141213431 + 100276699 100276746 MER45C 884 + 99 147 211240 37 0 1 10 chain 107160 chr9 141213431 + 100336318 100337737 LTR12C 1709 + 0 1709 34928 338 0 43 83 5 7 179 0 278 145 0 1 35 12 9 97 44 13 318 0 1 72 17 16 74 chain 554449 chr9 141213431 + 100343275 100349313 L1PA2 6032 - 0 6031 890 860 1 0 240 3 0 2119 0 1 603 3 0 1953 1 0 255 chain 5249 chr9 141213431 + 100351469 100351532 L1MB7 1623 - 1516 1579 192527 63 chain 28000 chr9 141213431 + 100382339 100382711 THE1B 368 + 0 368 93001 172 2 1 20 2 0 56 2 1 118 chain 49083 chr9 141213431 + 100382712 100383324 THE1B-int 1605 + 1 657 59685 293 2 0 63 0 21 52 1 26 201 chain 11013 chr9 141213431 + 100434895 100435109 Tigger2a 444 + 0 244 156153 33 63 81 85 0 3 14 0 9 19 chain 14816 chr9 141213431 + 100452198 100452420 MLT1D 503 - 32 256 141894 42 19 22 55 1 0 105 chain 9189 chr9 141213431 + 100455034 100455186 MER1A 529 + 357 504 164610 65 1 0 34 5 0 6 16 17 25 chain 40103 chr9 141213431 + 100461866 100462389 LTR6B 557 - 0 557 69177 22 0 1 33 0 1 6 0 1 91 5 6 36 0 1 302 13 42 15 chain 12350 chr9 141213431 + 100475025 100475211 MER30 238 + 36 238 150831 62 21 40 57 3 0 43 chain 33947 chr9 141213431 + 100516100 100516586 MER66B 489 - 16 489 77697 63 14 9 34 2 0 26 8 1 76 1 0 231 6 8 25 chain 6639 chr9 141213431 + 100516817 100517116 L1MD3 1191 - 827 1103 180171 18 10 0 28 185 172 58 chain 20654 chr9 141213431 + 100540833 100541170 THE1C 375 + 0 363 125122 70 0 14 21 9 10 71 0 1 7 45 55 114 chain 26761 chr9 141213431 + 100541182 100541525 THE1C-int 1605 + 0 402 97122 14 1 3 79 0 57 249 chain 28141 chr9 141213431 + 100556128 100556505 THE1C 375 - 0 375 92499 26 2 1 9 8 7 332 chain 146778 chr9 141213431 + 100558225 100559934 SVA_D 2077 + 133 2071 25046 392 39 0 162 0 40 157 0 83 27 0 67 42 0 78 207 0 1 4 9 8 670 chain 14413 chr9 141213431 + 100600809 100601038 L1PA16 3655 - 1728 1953 143172 69 11 8 45 19 18 85 chain 29301 chr9 141213431 + 100635366 100635675 AluYg6 310 + 0 309 87566 309 chain 5338 chr9 141213431 + 100644774 100644843 MER41B 635 + 481 548 191663 47 2 0 20 chain 29073 chr9 141213431 + 100648680 100648986 AluYb8 318 - 12 318 88668 306 chain 5452 chr9 141213431 + 100648996 100649078 Tigger1 2417 + 54 136 190515 49 6 5 9 0 1 18 chain 8406 chr9 141213431 + 100677971 100678075 HY1 111 + 0 105 168812 74 0 1 30 chain 528492 chr9 141213431 + 100707646 100713796 L1PA6 6164 - 16 6164 4355 571 1 4 380 1 5 139 0 1 4 1 0 401 1 0 688 0 1 686 0 2 49 2 1 26 0 1 9 9 1 854 14 6 588 0 1 294 0 5 578 1 3 20 2 0 249 0 1 80 11 8 238 4 5 249 chain 29244 chr9 141213431 + 100761078 100761388 AluYa5 310 - 0 310 87827 310 chain 124647 chr9 141213431 + 100769294 100771241 Charlie3 2679 + 858 2679 29491 32 2 1 108 2 0 49 33 4 56 11 0 189 0 1 40 1 2 42 1 0 44 0 1 148 0 3 25 0 3 53 0 3 12 4 9 150 231 137 28 11 10 227 1 0 17 1 0 161 2 0 58 1 0 81 0 3 48 2 0 76 chain 22525 chr9 141213431 + 100776445 100776700 AluY 311 + 38 293 117908 255 chain 19044 chr9 141213431 + 100794745 100795210 L1MD1 2063 + 1483 1903 129988 45 1 0 22 6 0 41 1 0 19 0 1 35 9 10 31 8 9 25 4 1 18 4 0 30 131 98 35 chain 25144 chr9 141213431 + 100802936 100803234 AluSg7 307 - 6 305 104039 174 0 1 124 chain 25275 chr9 141213431 + 100806650 100806944 AluSc5 308 - 5 299 103349 294 chain 69902 chr9 141213431 + 100812569 100813966 MER57-int 2662 - 13 1058 48435 24 3 0 24 16 12 6 1 0 24 4 1 9 1 0 6 1 0 26 2 0 11 14 2 45 0 1 17 23 17 22 0 8 14 0 6 35 10 7 35 18 0 97 304 2 289 8 4 49 30 18 25 0 5 204 chain 24320 chr9 141213431 + 100817610 100817957 LTR8 732 - 163 514 108545 26 20 17 115 0 1 140 4 10 42 chain 23530 chr9 141213431 + 100827957 100828242 THE1A 353 + 6 290 112963 103 2 1 180 chain 3558 chr9 141213431 + 100851377 100851457 LTR36 617 + 16 111 214361 34 27 42 19 chain 3210 chr9 141213431 + 100887485 100887523 MIRb 242 + 69 107 220733 38 chain 11484 chr9 141213431 + 100901951 100902092 AluJb 308 + 156 297 154359 141 chain 7202 chr9 141213431 + 100935315 100935403 AluJr 308 + 10 99 176054 18 0 1 70 chain 21852 chr9 141213431 + 100936126 100936433 AluSp 311 + 10 294 120808 170 0 9 79 45 13 13 chain 25839 chr9 141213431 + 100936791 100937155 THE1D 372 + 0 372 100709 159 28 35 76 0 1 101 chain 23658 chr9 141213431 + 101013296 101013585 AluSg7 307 + 10 293 112267 121 0 1 38 8 1 122 chain 28816 chr9 141213431 + 101027594 101028004 LTR7 482 - 0 482 89818 27 5 0 74 4 0 57 0 9 23 0 31 36 0 1 109 8 46 28 8 10 31 chain 29663 chr9 141213431 + 101028769 101029079 AluYa5 310 - 0 310 85990 310 chain 280290 chr9 141213431 + 101029583 101033280 HERVH-int 3825 - 0 3825 14627 194 0 1 185 36 37 171 5 7 135 0 3 493 0 2 242 6 0 254 4 9 82 0 4 536 1 0 16 7 9 13 9 0 206 15 0 431 3 8 7 2 0 15 0 2 12 231 352 65 2 1 98 0 2 161 5 17 55 chain 29807 chr9 141213431 + 101033294 101037585 LTR7 482 - 12 482 85413 109 0 1 36 0 9 51 2798 0 39 0 1 109 1048 14 101 chain 4774 chr9 141213431 + 101033497 101033555 LTR7 482 - 257 315 197649 58 chain 12663 chr9 141213431 + 101036113 101036288 LTR7 482 - 9 187 149593 89 16 19 70 chain 5789 chr9 141213431 + 101036444 101036513 LTR7 482 - 413 482 187258 69 chain 19353 chr9 141213431 + 101037188 101037484 LTR7 482 - 0 331 129061 49 15 16 85 4 5 21 0 1 13 15 46 21 0 1 73 chain 17616 chr9 141213431 + 101053326 101053559 MER47A 366 - 1 243 133949 70 1 0 79 0 10 83 chain 3961 chr9 141213431 + 101079101 101079153 MIRb 242 - 112 164 207965 52 chain 99224 chr9 141213431 + 101082167 101083264 L1PA3long 6157 + 5054 6151 36966 1097 chain 6507 chr9 141213431 + 101096137 101096219 MIR 256 + 65 147 181182 82 chain 36586 chr9 141213431 + 101115532 101115976 Tigger1 2417 - 630 1074 74117 444 chain 22478 chr9 141213431 + 101146630 101146904 AluSp 311 + 40 311 118117 250 3 0 21 chain 125720 chr9 141213431 + 101184915 101186332 L1PA3long 6157 - 20 1429 29181 644 0 2 108 1 2 67 0 4 503 15 0 79 chain 91539 chr9 141213431 + 101186335 101187331 L1PA3long 6157 + 3717 4712 39117 175 1 0 820 chain 27719 chr9 141213431 + 101209342 101209644 AluYa5 310 - 10 310 93975 203 2 0 97 chain 22002 chr9 141213431 + 101215643 101215917 LTR70 1284 - 970 1245 120220 220 0 1 54 chain 127165 chr9 141213431 + 101225930 101227416 SVA_A 1864 + 15 1864 28777 647 0 110 115 4 0 64 2 259 654 chain 16415 chr9 141213431 + 101232515 101232860 THE1B 368 - 0 351 137165 125 131 136 59 0 1 30 chain 538457 chr9 141213431 + 101270565 101276681 L1PA3long 6157 + 4 6142 3076 446 20 14 15 13 14 211 1 8 273 1 0 1602 0 16 612 1 0 1053 0 3 1487 0 3 241 0 6 6 6 0 128 chain 34524 chr9 141213431 + 101276708 101277089 L1PA4 6152 + 5768 6149 76872 381 chain 9024 chr9 141213431 + 101290296 101290420 MER33 330 + 167 290 165470 85 4 3 35 chain 3690 chr9 141213431 + 101295021 101295064 MER5A 189 - 146 189 212082 43 chain 3634 chr9 141213431 + 101320511 101320552 MER53 195 - 128 169 213069 41 chain 40597 chr9 141213431 + 101347484 101347933 L1PA4 6152 + 5703 6151 68445 15 1 0 433 chain 52695 chr9 141213431 + 101368064 101368670 L1PA5 6144 - 3 613 57190 46 0 3 286 2 3 272 chain 51241 chr9 141213431 + 101400734 101401375 PABL_A 660 + 0 660 58160 31 0 10 76 1 5 179 1 3 121 0 2 53 0 1 179 chain 39643 chr9 141213431 + 101417809 101418271 L1PA7 6471 + 5999 6464 69830 11 0 2 293 3 4 155 chain 55839 chr9 141213431 + 101443265 101443874 L1PA2 6032 + 5410 6028 55223 362 0 4 110 0 1 43 0 4 94 chain 38261 chr9 141213431 + 101447213 101447733 MLT2A2 560 + 0 529 71763 169 12 11 100 1 0 21 0 1 4 4 3 96 1 12 112 chain 16059 chr9 141213431 + 101449596 101449842 MER31B 477 - 233 471 138181 44 17 10 103 2 0 39 1 2 40 chain 5509 chr9 141213431 + 101475016 101475094 MADE1 96 - 2 96 189954 46 1 17 31 chain 30002 chr9 141213431 + 101499554 101499929 L1PB 1623 + 1086 1452 84801 217 8 0 143 1 0 6 chain 105769 chr9 141213431 + 101500000 101501540 L1PB1 5432 + 3951 5420 35313 162 1 0 326 0 1 4 0 1 100 3 1 80 3 0 170 0 1 7 0 2 9 31 19 264 1 0 5 1 2 9 1 0 23 27 21 9 2 0 5 22 0 32 19 17 15 1 0 33 1 0 12 1 0 12 18 4 29 9 6 14 2 0 27 0 2 6 3 0 10 1 0 13 1 0 16 chain 24696 chr9 141213431 + 101502040 101502308 AluYf4 310 - 14 285 106461 262 0 3 6 chain 3572 chr9 141213431 + 101510694 101510924 MLT1J 494 + 56 286 214105 4 1 0 19 167 168 39 chain 13780 chr9 141213431 + 101521933 101522210 L1MA5A 2387 + 2052 2306 145333 56 1 0 28 30 28 30 5 6 15 3 0 11 22 6 14 1 0 50 1 0 10 chain 19005 chr9 141213431 + 101532308 101532655 THE1B 368 + 0 368 130096 44 0 5 13 6 8 11 4 5 83 6 5 27 12 17 10 14 23 24 0 1 30 14 13 49 chain 27725 chr9 141213431 + 101541947 101542243 AluYg6 310 - 14 310 93952 296 chain 13085 chr9 141213431 + 101559579 101559754 L1PA16 3655 - 86 263 147901 83 10 12 82 chain 3636 chr9 141213431 + 101562039 101562081 MLT1N2 510 - 452 494 213040 42 chain 20666 chr9 141213431 + 101592050 101592369 L1MA2 4263 - 150 457 125081 8 1 0 37 17 10 5 2 0 88 11 9 150 chain 22236 chr9 141213431 + 101613263 101613579 MER4D0 881 + 554 881 119183 88 10 0 7 4 1 29 1 22 7 0 2 46 0 1 124 chain 22555 chr9 141213431 + 101616415 101616804 MER54A 897 - 503 897 117789 28 3 6 62 72 75 68 0 1 59 2 0 95 chain 3887 chr9 141213431 + 101617528 101617670 L1MEf 1413 - 619 765 209056 35 66 68 5 1 0 4 1 0 5 0 1 16 0 3 9 chain 18781 chr9 141213431 + 101649967 101650287 MER2 342 - 6 320 130730 37 5 4 59 21 22 127 27 21 44 chain 56327 chr9 141213431 + 101653445 101654101 L1PA7 6471 + 5803 6457 54949 473 0 2 118 11 7 54 chain 20096 chr9 141213431 + 101681624 101681895 AluSc 308 + 23 294 126840 99 0 1 8 22 21 142 chain 3659 chr9 141213431 + 101753651 101753752 LTR12C 1709 - 995 1055 212591 38 46 5 17 chain 9959 chr9 141213431 + 101753767 101754126 LTR12C 1709 - 617 872 160786 7 26 0 29 186 30 22 0 78 89 chain 1584 chr9 141213431 + 101754216 101754274 LTR12C 1709 - 641 699 176920 58 chain 34621 chr9 141213431 + 101769173 101769693 MER4A1_ 611 - 26 611 76727 273 0 64 32 0 1 89 72 73 28 1 0 25 chain 33567 chr9 141213431 + 101772546 101773020 LTR3A 482 - 0 482 78294 50 13 12 17 8 7 52 3 4 168 10 19 153 chain 3246 chr9 141213431 + 101790609 101790647 L1PB1 5432 + 5241 5279 220083 38 chain 18691 chr9 141213431 + 101810826 101811035 L1PA4 6152 - 1 210 130971 209 chain 11848 chr9 141213431 + 101819045 101819604 L1MB7 1623 - 32 505 152833 31 171 131 7 1 0 52 2 1 15 27 27 4 1 0 20 3 0 11 140 101 4 1 0 69 chain 24527 chr9 141213431 + 101842624 101842926 AluY 311 + 0 296 107389 126 3 0 8 11 8 154 chain 62055 chr9 141213431 + 101862283 101863030 L1PA7 6471 + 5701 6459 51875 25 5 22 147 8 0 302 0 1 115 0 1 145 chain 7818 chr9 141213431 + 101908158 101908247 5S 121 - 31 120 172197 89 chain 20407 chr9 141213431 + 101927944 101928319 THE1C 375 + 0 375 125871 15 3 1 31 1 2 64 8 7 42 72 75 113 1 0 25 chain 89011 chr9 141213431 + 102004200 102005184 L1PA5 6144 - 0 992 39998 841 0 8 143 chain 77708 chr9 141213431 + 102009108 102009953 L1PA3long 6157 + 5311 6157 44653 733 0 1 112 chain 24722 chr9 141213431 + 102024993 102025292 AluSx4 309 + 3 299 106316 291 3 0 5 chain 24988 chr9 141213431 + 102035949 102036243 L1PA6 6164 + 5867 6162 104870 135 1 2 158 chain 32306 chr9 141213431 + 102052454 102052957 MLT2A1 477 - 0 477 80358 51 63 41 76 11 9 64 0 1 65 4 1 169 chain 47602 chr9 141213431 + 102064193 102064817 MER41B 635 + 0 635 60761 128 0 1 19 0 1 302 20 19 57 0 3 49 0 7 49 chain 10267 chr9 141213431 + 102103065 102103215 MER30 238 - 0 164 159295 105 14 28 31 chain 34302 chr9 141213431 + 102159886 102160335 L1PA8 5853 - 0 442 77205 92 2 1 19 2 1 52 1 0 7 4 3 70 2 0 43 2 1 153 chain 6767 chr9 141213431 + 102178883 102179000 MER53 195 + 75 195 179191 10 1 5 14 1 4 14 3 0 19 1 0 54 chain 553454 chr9 141213431 + 102261023 102267041 L1PA2 6032 + 1 6030 1008 481 1 2 542 0 1 3198 0 4 1783 1 6 12 chain 15082 chr9 141213431 + 102284555 102284882 L1PA16 3655 - 36 341 141081 21 118 95 82 2 3 104 chain 4797 chr9 141213431 + 102351862 102351998 MER46C 351 + 179 316 197395 17 62 63 57 chain 6742 chr9 141213431 + 102398147 102398234 L1PB4 2604 + 2465 2552 179375 87 chain 6834 chr9 141213431 + 102398909 102398996 L1PA6 6164 - 4 89 178696 6 2 0 79 chain 91764 chr9 141213431 + 102414558 102415897 L1PREC2 3366 + 226 1567 39043 6 1 0 12 2 1 12 3 1 30 2 1 70 6 10 53 4 2 46 2 1 50 5 6 99 0 2 235 18 22 97 1 0 265 8 8 45 0 1 9 2 1 9 18 21 15 3 0 211 chain 40194 chr9 141213431 + 102432062 102432504 LTR7 482 + 0 473 69036 264 0 31 178 chain 287447 chr9 141213431 + 102432515 102436469 HERVH-int 3825 + 0 3819 14192 212 0 11 266 2 0 11 23 22 10 5 0 38 64 0 10 1 0 24 70 0 15 1 0 11 109 1 18 21 0 7 1 0 41 1 0 24 117 9 49 1 0 241 0 1 202 15 0 218 0 1 157 0 5 77 8 35 225 0 1 699 0 1 428 10 12 28 10 220 109 3 0 6 1 4 143 3 8 219 chain 4565 chr9 141213431 + 102433182 102433246 HERVH-int 3825 + 656 719 200055 42 2 1 20 chain 40525 chr9 141213431 + 102437732 102438183 LTR7 482 + 0 482 68556 264 0 31 187 chain 25562 chr9 141213431 + 102442054 102442392 THE1C 375 + 1 375 101925 212 6 41 65 0 1 55 chain 116177 chr9 141213431 + 102458853 102460130 L1PA4 6152 + 4873 6151 32385 516 0 1 761 chain 44446 chr9 141213431 + 102509450 102510022 MER41A 554 + 0 554 63639 213 32 14 327 chain 28351 chr9 141213431 + 102521361 102521863 L1PA15 4387 - 21 529 91763 10 1 0 28 6 0 6 0 1 6 3 1 42 19 16 36 5 4 11 8 27 10 2 0 6 9 11 21 1 0 20 7 6 50 5 9 113 1 0 42 2 0 32 chain 32763 chr9 141213431 + 102542562 102543113 L1PB1 5432 - 8 513 79593 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 16 8 0 11 2 0 4 1 0 16 1 0 23 0 1 19 1 0 16 2 1 36 3 0 14 2 0 12 24 11 33 3 0 11 3 0 184 chain 45766 chr9 141213431 + 102544506 102545046 L1PA7 6471 - 3 541 62260 145 5 3 390 chain 2709 chr9 141213431 + 102552978 102553025 L1MA4 2864 - 60 108 230131 29 7 8 11 chain 29200 chr9 141213431 + 102559402 102559717 AluYb8 318 + 0 313 88052 132 2 0 181 chain 14179 chr9 141213431 + 102560284 102560438 L1PA3long 6157 + 6003 6157 143960 154 chain 175470 chr9 141213431 + 102615609 102617481 L1HS 6032 - 0 1872 21398 1872 chain 105499 chr9 141213431 + 102642717 102643889 L1PA5 6144 - 6 1177 35374 12 1 0 1159 chain 6013 chr9 141213431 + 102661408 102661490 L1M1 2793 + 2577 2661 185105 7 0 2 7 0 1 35 1 0 32 chain 122670 chr9 141213431 + 102663413 102664976 THE1A-int 1579 - 13 1579 30175 191 0 1 68 19 25 84 0 1 146 9 1 358 0 1 407 0 2 281 chain 21777 chr9 141213431 + 102664976 102665357 THE1A 353 - 0 353 121108 55 16 11 106 4 2 54 16 16 15 25 5 34 7 8 34 2 0 13 chain 19962 chr9 141213431 + 102673614 102674212 L1MA4 2864 - 338 630 127267 11 3 0 9 6 5 167 3 0 39 306 7 54 chain 75322 chr9 141213431 + 102714485 102715319 L1PA3long 6157 + 5320 6157 45865 663 1 3 56 0 1 114 chain 27750 chr9 141213431 + 102745570 102745862 AluYb8 318 + 25 317 93866 292 chain 517644 chr9 141213431 + 102750843 102756926 L1PA6 6164 + 0 6147 5408 367 4 0 145 1 0 120 0 3 184 0 15 296 5 22 105 0 5 172 1 6 271 0 5 1249 3 5 336 1 0 405 0 1 653 3 7 274 3 4 35 0 1 626 0 8 168 0 3 261 1 2 4 1 0 389 chain 50681 chr9 141213431 + 102758836 102761687 L1PB1 5432 - 12 906 58516 16 1 0 13 1 0 21 1 0 26 22 17 16 9 0 15 3 0 16 6 5 38 19 17 53 2 0 6 16 15 8 1 0 23 11 0 12 117 0 8 8 12 68 0 2 4 1 0 155 7 15 24 9 10 69 3 0 11 1817 0 42 0 3 48 4 0 10 0 1 11 1 5 79 chain 14362 chr9 141213431 + 102810451 102810614 L1PA4 6152 + 5989 6151 143333 104 1 0 58 chain 4439 chr9 141213431 + 102817543 102817642 L1MA3 4352 + 4178 4275 201460 51 31 29 17 chain 22823 chr9 141213431 + 102823452 102823729 AluSc 308 + 10 283 116480 54 3 0 193 1 0 26 chain 4319 chr9 141213431 + 102826967 102827017 Tigger3b 1229 + 42 92 202984 50 chain 171528 chr9 141213431 + 102829438 102831588 SVA_D 2077 + 0 2077 21878 667 0 77 176 1 0 24 19 8 68 76 49 187 61 0 73 48 0 59 0 1 4 16 15 134 1 0 529 1 0 6 chain 6361 chr9 141213431 + 102830393 102830469 SVA_D 2077 + 1120 1196 64485 76 chain 5106 chr9 141213431 + 102830656 102830717 SVA_D 2077 + 1432 1481 64485 27 12 0 22 chain 3977 chr9 141213431 + 102830790 102830838 SVA_D 2077 + 937 975 105596 10 10 0 28 chain 335340 chr9 141213431 + 102836635 102841300 HERVL-int 5654 + 1561 5654 12014 157 0 2 2139 0 7 14 0 15 218 1 0 644 0 6 117 0 13 235 0 13 78 22 0 58 0 3 84 0 3 11 0 2 10 4 0 18 622 0 20 0 12 46 0 1 167 chain 6312 chr9 141213431 + 102844577 102844650 L1PA8 5853 + 5772 5845 182693 73 chain 11388 chr9 141213431 + 102851298 102851579 Tigger7 736 + 68 372 154754 54 54 53 26 52 75 20 1 2 74 chain 24994 chr9 141213431 + 102871959 102872248 AluSp 311 - 24 311 104825 157 2 0 130 chain 13491 chr9 141213431 + 102874850 102875039 MER30 238 - 0 201 146383 31 1 4 79 4 13 74 chain 65700 chr9 141213431 + 102877594 102878362 L1PA5 6144 - 6 783 50248 132 17 17 107 0 10 188 2 1 322 chain 46608 chr9 141213431 + 102896257 102896998 L1PB1 5432 - 23 727 61528 5 1 0 13 1 0 21 1 0 21 27 22 18 20 9 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 20 14 395 chain 289107 chr9 141213431 + 102904666 102908395 HERVH-int 3825 - 0 3825 14077 491 4 214 781 0 2 621 4 31 215 1 0 39 9 0 202 15 0 447 0 3 72 12 9 28 42 0 18 24 21 13 43 0 13 29 0 25 1 0 10 1 0 40 4 2 42 11 13 93 15 16 31 1 0 50 0 2 260 1 0 21 chain 30444 chr9 141213431 + 102908397 102908804 LTR7 482 - 0 482 83539 115 1 2 67 0 35 38 0 1 109 9 47 68 chain 518637 chr9 141213431 + 102939318 102945563 L1PA7 6471 + 210 6467 5318 193 0 1 28 1 0 1078 8 0 115 2 1 133 1 0 145 1 0 4 0 1 13 0 2 151 0 1 471 1 0 94 2 0 455 0 4 324 0 10 73 0 1 21 3 1 13 15 17 645 0 1 222 0 10 238 0 4 564 0 1 358 0 4 7 0 3 51 20 0 93 3 0 99 0 1 26 0 1 151 0 4 93 0 1 330 chain 17553 chr9 141213431 + 102948471 102948712 AluSg7 307 - 49 287 134116 40 6 0 6 0 6 6 5 4 64 2 0 112 chain 19762 chr9 141213431 + 102952178 102952542 L1PB3 3668 - 3287 3664 127929 17 3 7 125 4 39 56 3 0 10 6 4 14 24 11 22 29 22 29 1 0 21 chain 518100 chr9 141213431 + 102993641 102999995 L1PA7 6471 - 1 6370 5371 233 0 4 372 0 1 95 3 0 131 5 9 81 1 0 241 1 0 354 1 0 177 16 0 50 1 0 41 0 1 231 0 1 79 0 1 781 0 3 31 0 4 52 1 0 433 0 1 431 2 1 240 0 2 128 1 0 168 1 0 264 15 26 305 0 3 644 0 1 226 0 1 209 1 2 153 24 27 131 chain 7923 chr9 141213431 + 103000000 103000092 L1P3 4156 - 4060 4152 171495 92 chain 524843 chr9 141213431 + 103015698 103021832 L1PA5 6144 - 0 6144 4698 145 23 23 171 2 1 510 1 0 86 7 8 864 4 7 170 0 1 955 2 1 474 0 7 524 1 3 780 1 6 238 9 0 163 10 4 300 0 1 227 5 1 179 1 0 70 2 1 78 0 14 132 chain 38390 chr9 141213431 + 103028489 103028998 MER41A 554 - 0 506 71588 73 15 14 84 10 8 327 chain 40901 chr9 141213431 + 103030293 103030826 MER41C 542 - 0 542 68031 173 0 1 54 1 0 174 5 8 38 0 4 40 0 1 25 0 1 23 chain 21594 chr9 141213431 + 103093269 103093550 AluSq2 311 + 14 291 121795 109 9 5 163 chain 3699 chr9 141213431 + 103096866 103096908 Charlie1a 1436 - 799 841 211955 42 chain 17632 chr9 141213431 + 103117492 103117680 L1PA3long 6157 + 5969 6157 133903 188 chain 206305 chr9 141213431 + 103127256 103130166 HERVK22-int 3844 - 1208 3826 18766 135 0 1 90 0 2 121 0 1 44 5 8 275 0 2 376 0 1 16 0 4 205 0 2 344 1 0 7 1 2 276 4 3 116 309 0 29 0 1 223 0 1 333 chain 10740 chr9 141213431 + 103145234 103145369 MSTC 436 + 0 139 157244 15 0 4 120 chain 43010 chr9 141213431 + 103146719 103147269 MER41A 554 + 2 554 65405 166 0 1 197 7 8 180 chain 136495 chr9 141213431 + 103154518 103156164 SVA_A 1864 + 28 1864 26744 97 6 17 311 0 116 207 0 110 137 3 0 121 40 0 56 10 8 37 3 1 618 chain 19924 chr9 141213431 + 103158947 103159175 AluY 311 + 61 289 127385 228 chain 8623 chr9 141213431 + 103168516 103168660 MER30 238 - 0 164 167622 39 3 0 35 1 7 33 2 0 7 6 25 18 chain 25592 chr9 141213431 + 103169209 103169535 MER83 447 + 0 334 101770 233 1 8 24 0 1 68 chain 46538 chr9 141213431 + 103269318 103269997 L1PA16 3655 - 70 764 61563 7 3 0 47 11 15 32 3 12 182 3 1 85 1 0 65 9 15 34 1 3 105 0 2 57 1 0 20 2 1 11 chain 13901 chr9 141213431 + 103287031 103287207 L1PA6 6164 - 2 182 144910 62 0 3 92 3 4 19 chain 550350 chr9 141213431 + 103289510 103295533 L1PA2 6032 + 1 6032 1401 71 0 1 183 1 0 2168 1 0 608 0 8 1546 3 0 590 0 4 852 chain 83812 chr9 141213431 + 103301605 103302963 LTR12D 1347 - 0 1347 41982 250 0 97 294 134 9 66 79 0 15 40 0 48 2 33 195 10 46 13 4 0 7 19 92 182 chain 2569 chr9 141213431 + 103302169 103302231 LTR12D 1347 - 695 757 149690 62 chain 2720 chr9 141213431 + 103302248 103302283 LTR12D 1347 - 654 689 200709 35 chain 3274 chr9 141213431 + 103302349 103302428 LTR12D 1347 - 825 866 149690 14 38 0 27 chain 1285 chr9 141213431 + 103302443 103302474 LTR12D 1347 - 881 912 149690 31 chain 6252 chr9 141213431 + 103306029 103306113 MER30 238 - 136 238 183151 65 1 19 18 chain 120285 chr9 141213431 + 103306874 103308432 THE1B-int 1605 - 5 1604 30946 6 3 0 267 0 16 106 27 8 121 0 4 403 2 16 197 1 26 170 0 1 143 1 4 111 chain 25850 chr9 141213431 + 103308433 103308805 THE1B 368 - 0 368 100655 52 0 7 15 1 0 18 8 0 108 1 0 75 17 16 77 chain 8300 chr9 141213431 + 103377613 103377739 MER30 238 - 8 152 169398 30 3 0 25 0 1 44 4 24 20 chain 366080 chr9 141213431 + 103377748 103382342 L1PA7 6471 - 4 6471 11204 146 0 6 6 8 1 687 1 0 382 0 11 276 6 5 117 0 1842 95 0 4 388 6 4 220 8 1 107 1 0 5 0 1 107 0 2 295 1 0 167 5 11 112 0 3 7 1 2 243 0 4 143 0 1 270 1 2 12 2 1 31 1 0 100 0 2 244 0 1 150 0 10 243 chain 8574 chr9 141213431 + 103382350 103382455 MER30 238 - 133 238 167885 105 chain 297098 chr9 141213431 + 103396625 103400706 L1P2 5180 - 1478 5178 13580 180 3 0 249 0 2 88 1 0 11 0 1 208 3 5 27 0 1 354 0 4 165 0 1 98 0 2 98 4 6 161 0 1 198 393 7 1037 0 15 218 1 0 50 1 0 68 19 0 203 1 0 44 1 0 51 5 4 80 29 31 32 chain 33496 chr9 141213431 + 103398493 103398866 L1PA3long 6157 - 0 373 78417 373 chain 74001 chr9 141213431 + 103408178 103409029 L1PA5 6144 - 12 866 46511 150 0 1 633 0 3 51 1 0 16 chain 201276 chr9 141213431 + 103409031 103411311 L1PA5 6144 + 2981 5260 19116 255 0 1 440 3 0 13 0 1 1569 chain 3378 chr9 141213431 + 103415035 103415084 MADE1 96 + 29 94 217529 13 1 17 35 chain 125404 chr9 141213431 + 103418676 103420250 THE1A-int 1579 + 0 1579 29277 571 8 6 142 4 13 7 9 0 597 1 0 31 3 11 201 chain 27935 chr9 141213431 + 103420250 103420598 THE1A 353 + 0 345 93222 83 1 0 27 1 0 88 1 0 147 chain 22013 chr9 141213431 + 103423527 103423882 THE1B 368 - 0 368 120171 18 3 0 5 7 10 25 0 4 61 37 47 29 1 0 139 1 0 5 0 1 24 chain 14157 chr9 141213431 + 103425072 103425280 L1PA8 5853 - 0 203 144016 93 1 0 19 2 1 46 3 1 14 7 6 23 chain 36986 chr9 141213431 + 103451060 103451518 LTR2 463 + 0 463 73526 61 0 3 298 12 13 57 0 1 30 chain 554014 chr9 141213431 + 103452995 103459018 L1PA2 6032 + 0 6025 948 317 1 0 275 0 1 3333 0 1 841 0 1 1256 chain 24718 chr9 141213431 + 103462550 103462837 L1PA7 6471 + 6184 6470 106340 124 0 1 152 2 0 9 chain 494599 chr9 141213431 + 103466770 103472856 L1PA6 6164 - 3 6164 7134 123 0 1 21 4 5 17 1 2 281 0 4 166 6 7 335 14 8 1201 0 1 554 0 1 111 0 1 75 0 14 43 0 1 79 0 1 332 0 1 445 1 2 312 0 1 52 0 9 150 0 2 520 0 4 294 0 1 125 1 2 35 0 17 191 0 24 21 7 6 114 8 0 14 0 1 16 32 31 158 4 5 130 0 1 93 chain 124115 chr9 141213431 + 103474051 103475649 THE1B-int 1605 - 10 1604 29658 104 0 1 204 0 1 39 0 1 50 0 1 83 39 1 488 2 5 163 1 26 310 0 2 115 chain 26248 chr9 141213431 + 103475650 103476005 THE1B 368 - 0 368 99025 125 0 5 36 2 0 8 0 8 18 1 0 126 0 5 24 2 0 13 chain 4118 chr9 141213431 + 103479070 103479119 MLT1C 463 - 0 49 205671 49 chain 266607 chr9 141213431 + 103496104 103500000 L1PB1 5432 - 10 3611 15358 18 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 15 6 7 3 0 15 1 0 10 0 2 32 1 0 18 1 0 50 2 0 11 16 11 9 1 0 24 3 0 7 313 27 77 1 0 5 9 11 164 21 19 183 3 0 499 1 0 20 14 8 96 6 7 189 0 26 44 1 2 219 0 1 19 2 1 748 0 1 155 1 4 81 17 14 484 2 3 156 1 5 18 chain 58065 chr9 141213431 + 103504765 103505441 L1PA6 6164 - 2 678 53945 151 1 0 163 0 1 361 chain 518243 chr9 141213431 + 103505447 103511862 L1PA5 6144 - 9 6144 5352 1820 0 14 228 327 0 813 0 2 944 4 1 102 0 2 364 0 5 670 9 0 295 5 6 159 0 8 233 0 1 290 7 19 20 5 19 120 chain 29148 chr9 141213431 + 103507511 103507821 AluYa5 310 - 0 310 88321 310 chain 120501 chr9 141213431 + 103514811 103516682 THE1B-int 1605 - 7 1605 30876 308 0 1 282 8 9 125 0 5 359 1 0 45 9 34 6 0 2 59 312 6 357 chain 28616 chr9 141213431 + 103519011 103519365 THE1A 353 + 0 353 90672 106 5 4 243 chain 129534 chr9 141213431 + 103526112 103529975 L1PA14 3548 - 83 2090 28199 10 6 0 41 1 0 12 5 4 5 1 0 15 4 2 26 0 1 4 8 3 11 1 0 23 1 2 68 0 1 16 1 0 84 2 1 5 2 0 14 4 0 32 0 1 17 2 24 19 34 30 41 3 1 13 3 1 24 8 5 108 0 1 16 14 8 17 1847 0 68 6 5 88 6 0 7 1 0 6 1 0 33 16 15 35 11 13 36 0 4 166 0 5 180 0 1 33 1 2 73 0 1 265 0 6 99 8 0 98 0 4 58 chain 75789 chr9 141213431 + 103526849 103527688 L1PA3long 6157 - 8 849 45602 163 0 1 582 0 1 94 chain 90363 chr9 141213431 + 103527688 103528680 L1PA3long 6157 + 4293 5285 39484 992 chain 14714 chr9 141213431 + 103532371 103532749 L1PB1 5432 - 5 348 142227 5 2 0 18 1 0 13 1 0 20 2 1 24 2 0 5 1 2 8 1 0 4 2 0 19 40 27 44 1 0 11 10 9 49 2 0 9 4 1 12 2 1 10 11 10 11 15 11 19 chain 10238 chr9 141213431 + 103534880 103535189 MLT1A0 366 - 4 333 159436 86 155 169 41 3 8 5 0 1 19 chain 321093 chr9 141213431 + 103539920 103543575 L1PA5 6144 + 2481 6136 12551 511 1 0 40 1 0 136 0 1 25 1 0 6 0 2 480 1 0 248 1 2 2204 chain 33467 chr9 141213431 + 103552063 103552440 L1PA5 6144 + 5755 6132 78464 55 0 1 220 1 0 101 chain 308506 chr9 141213431 + 103560497 103563968 L1PA5 6144 + 2667 6144 13067 535 1 0 2026 18 25 891 chain 43218 chr9 141213431 + 103565515 103566067 MLT2A2 560 - 0 560 65149 229 0 1 140 4 3 69 0 8 110 chain 2883 chr9 141213431 + 103576861 103576891 MER52D 1964 + 1174 1204 227323 30 chain 44323 chr9 141213431 + 103581007 103581513 L1PA4 6152 + 5607 6138 63799 371 1 26 134 chain 498722 chr9 141213431 + 103585736 103592328 L1PA7 6471 - 19 6466 6914 835 0 3 74 17 3 54 0 1 810 0 4 90 0 1 213 2 1 420 327 19 289 0 3 5 4 1 21 4 5 379 0 1 175 0 1 185 0 1 178 0 1 42 1 4 1277 2 3 62 15 20 211 20 6 12 0 1 291 1 0 240 11 181 118 16 15 191 chain 3872 chr9 141213431 + 103595275 103595319 L1PA5 6144 + 5943 5987 209273 44 chain 13366 chr9 141213431 + 103595319 103595470 L1PA5 6144 + 5988 6139 146829 151 chain 59296 chr9 141213431 + 103602247 103602905 L1PA4 6152 - 11 669 53225 658 chain 32654 chr9 141213431 + 103606153 103606611 MLT2A1 477 + 0 476 79756 102 13 5 61 5 2 90 7 6 119 3 33 58 chain 7481 chr9 141213431 + 103608669 103608842 L1PB1 5432 - 10 166 174264 18 1 0 34 1 0 24 26 23 15 15 6 6 2 0 15 1 0 15 chain 10345 chr9 141213431 + 103619122 103619297 MLT1D 503 - 0 175 158925 13 4 5 106 26 25 26 chain 15390 chr9 141213431 + 103622466 103622672 L1PA16 3655 - 965 1173 140231 14 2 1 11 0 3 179 chain 293910 chr9 141213431 + 103631865 103635215 L1PA5 6144 + 2761 6143 13773 479 1 0 35 0 37 1117 9 7 858 2 0 849 chain 167529 chr9 141213431 + 103653056 103655512 MER57-int 2662 + 284 2659 22332 29 2 0 134 9 13 201 0 5 34 0 8 46 14 2 16 0 2 43 3 0 42 10 9 224 8 0 45 0 3 116 0 1 90 6 3 38 5 11 5 2 0 106 2 1 330 17 0 64 8 4 47 1 0 13 0 4 51 0 1 302 11 10 87 17 12 58 0 1 4 3 0 5 64 23 16 1 0 7 11 9 15 24 18 33 3 0 34 chain 2965 chr9 141213431 + 103678305 103678336 LTR32 486 + 43 74 225768 31 chain 40359 chr9 141213431 + 103679048 103679583 MLT2A2 560 + 0 560 68791 169 17 33 320 7 16 22 chain 43047 chr9 141213431 + 103685221 103685800 L1PREC2 3366 + 1679 2265 65358 56 0 1 268 4 5 27 7 4 40 0 3 101 0 1 54 7 11 15 chain 39872 chr9 141213431 + 103696866 103697296 L1PA3long 6157 - 0 430 69503 430 chain 6307 chr9 141213431 + 103708003 103708099 Tigger1 2417 + 59 151 182739 47 11 6 25 0 1 13 chain 10806 chr9 141213431 + 103713311 103713454 L1PB4 2604 - 73 218 156960 37 5 7 101 chain 22030 chr9 141213431 + 103716261 103716515 L1PA4 6152 + 5889 6143 120108 254 chain 47283 chr9 141213431 + 103724882 103725464 L1PA7 6471 - 364 937 60978 231 10 0 210 0 2 43 1 0 87 chain 26509 chr9 141213431 + 103725464 103725786 L1PA7 6471 + 6134 6466 98011 263 1 11 58 chain 27926 chr9 141213431 + 103729212 103729557 L1PA7 6471 - 6 347 93255 114 10 5 32 0 1 189 chain 38219 chr9 141213431 + 103742159 103742628 LTR12 884 - 417 884 71814 90 2 0 377 chain 23027 chr9 141213431 + 103744547 103744880 THE1B 368 + 0 341 115503 44 5 20 101 8 7 30 1 0 20 4 0 65 2 1 53 chain 178516 chr9 141213431 + 103745483 103747386 L1HS 6032 - 1917 3820 21119 1903 chain 177968 chr9 141213431 + 103747386 103749290 L1HS 6032 + 4128 6032 21158 1904 chain 4332 chr9 141213431 + 103785199 103785297 MER58A 224 + 68 183 202812 16 37 54 45 chain 42868 chr9 141213431 + 103805214 103806215 L1PB1 5432 - 5 742 65574 5 2 0 18 1 0 12 1 0 15 81 75 6 3 0 16 1 0 44 1 0 15 2 1 50 31 24 8 1 0 24 1 0 9 239 2 199 2 1 95 5 1 102 0 2 4 0 1 8 chain 23415 chr9 141213431 + 103806215 103806514 L1PB1 5432 + 4387 4673 113567 239 13 0 47 chain 10491 chr9 141213431 + 103809272 103809391 MER1B 344 - 83 202 158282 119 chain 559122 chr9 141213431 + 103864426 103870456 L1PA2 6032 - 0 6031 412 3941 0 1 2089 chain 43289 chr9 141213431 + 103878496 103879382 MER41-int 2638 + 2059 2634 65067 28 1 0 18 0 1 218 0 9 47 315 0 169 9 4 81 chain 34048 chr9 141213431 + 103888866 103889358 HERVK14-int 1672 - 1182 1671 77551 156 3 0 5 26 29 212 11 10 37 1 0 11 1 0 29 chain 82952 chr9 141213431 + 103905727 103906696 L1PA6 6164 + 5171 6156 42357 144 1 0 431 0 14 248 0 1 8 0 2 137 chain 5083 chr9 141213431 + 103907298 103907360 L1MA8 2339 - 297 358 194248 33 1 0 28 chain 87394 chr9 141213431 + 103915478 103916827 L1P1 4361 - 20 1053 40610 12 2 1 23 1 0 24 0 2 120 0 1 8 1 0 178 317 0 505 0 1 158 chain 49739 chr9 141213431 + 103916840 103917402 L1PA5 6144 + 5580 6143 59201 230 0 1 332 chain 138389 chr9 141213431 + 103940302 103941993 HERVL-int 5654 + 3932 5654 26415 12 0 4 104 6 4 218 0 19 785 5 2 353 0 7 61 0 6 147 chain 33342 chr9 141213431 + 103941993 103942415 MLT2A1 477 + 0 423 78671 130 0 1 37 0 4 213 4 0 38 chain 14924 chr9 141213431 + 103985766 103986088 THE1D 372 + 0 332 141562 56 10 1 17 3 0 6 10 14 43 1 2 27 57 72 45 6 8 41 chain 9772 chr9 141213431 + 103987198 103987386 MER6A 605 + 345 538 161736 13 0 7 60 47 45 68 chain 30312 chr9 141213431 + 104021858 104022350 MER4A1_ 611 - 15 602 83878 15 1 5 16 0 4 10 19 17 68 1 2 147 0 64 32 0 1 48 1 0 6 0 12 25 44 56 59 chain 56980 chr9 141213431 + 104024775 104025449 L1PA7 6471 + 5799 6470 54539 660 2 0 7 1 0 4 chain 27835 chr9 141213431 + 104030195 104030517 L1PA5 6144 + 5793 6117 93575 194 2 4 126 chain 556567 chr9 141213431 + 104053082 104059238 L1PA3long 6157 + 4 6157 663 301 4 1 1518 13 0 383 0 2 1062 0 2 673 0 1 153 7 8 1202 0 4 513 0 3 327 chain 11434 chr9 141213431 + 104076725 104076943 Tigger1a_Art 216 - 0 209 154551 47 25 27 5 0 1 29 1 0 60 15 6 27 2 0 7 chain 24708 chr9 141213431 + 104078439 104078741 AluY 311 + 3 305 106389 120 1 0 9 1 2 171 chain 76064 chr9 141213431 + 104089547 104090626 MER11A 1151 - 0 1151 45439 230 0 1 36 18 0 22 45 0 26 0 26 120 5 6 145 0 1 94 0 1 109 0 2 38 4 0 60 0 8 63 1 100 63 chain 3815 chr9 141213431 + 104112702 104112752 MER58D 378 + 328 378 210171 50 chain 52209 chr9 141213431 + 104119815 104120468 THE1B-int 1605 - 5 658 57494 106 0 1 355 6 5 186 chain 4640 chr9 141213431 + 104128304 104128394 L1MA7 2200 - 110 189 199187 38 19 9 4 1 0 28 chain 89994 chr9 141213431 + 104147145 104148282 MER11A 1151 - 8 1151 39651 28 0 4 26 1 0 38 0 1 51 1 4 108 0 1 20 3 0 302 1 0 171 0 1 17 0 1 42 0 2 23 13 11 292 chain 6960 chr9 141213431 + 104173835 104173918 L1PA7 6471 - 5 85 177743 7 3 0 73 chain 86440 chr9 141213431 + 104178214 104179208 L1PA5 6144 - 9 1009 40992 145 12 9 291 0 4 412 0 5 134 chain 29573 chr9 141213431 + 104208743 104209114 THE1C 375 - 0 367 86308 25 1 0 225 3 0 117 chain 114841 chr9 141213431 + 104214204 104215724 THE1B-int 1605 + 45 1605 32835 66 0 1 320 19 44 129 0 1 404 0 13 11 25 14 16 0 1 292 1 10 232 0 1 5 chain 28426 chr9 141213431 + 104222396 104222696 AluYa5 310 - 10 310 91483 300 chain 2911 chr9 141213431 + 104272046 104272080 Charlie3 2679 - 1128 1162 226860 34 chain 18021 chr9 141213431 + 104280342 104280562 L1PA16 3655 - 80 300 132800 220 chain 392080 chr9 141213431 + 104280587 104286460 L1PB1 5432 - 14 5408 10392 14 1 0 13 1 0 18 1 0 27 2 0 14 8 5 19 19 8 4 1 0 15 1 0 17 8 9 18 1 0 12 44 5 50 30 23 13 1 0 20 3 0 5 14 15 100 0 3 176 4 3 92 6 7 69 323 20 42 0 4 102 115 5 161 0 1 97 4 3 6 0 1 15 16 20 100 0 5 101 1 0 107 0 2 86 3 4 35 7 1 779 8 12 41 0 3 49 1 0 254 0 2 49 0 1 42 6 0 84 0 1 781 10 9 128 0 6 54 0 1 11 18 12 5 2 0 7 1 0 271 1 0 126 0 23 135 0 1 5 9 5 60 0 5 78 1 0 78 3 0 63 26 0 416 1 0 68 18 15 22 chain 10185 chr9 141213431 + 104287310 104287479 L1PA16 3655 - 317 485 159695 30 20 18 6 0 2 75 4 3 34 chain 83298 chr9 141213431 + 104311312 104312299 LTR13 1007 - 0 1007 42205 194 0 1 258 2 20 136 0 1 4 1 0 7 0 1 385 chain 145886 chr9 141213431 + 104320681 104322565 L1PB1 5432 - 448 2342 25192 205 5 6 59 0 1 90 3 0 66 1 7 335 0 1 40 5 7 446 3 0 72 0 1 232 0 1 131 0 1 77 4 6 110 chain 4487 chr9 141213431 + 104346747 104346852 MERX 374 + 161 231 200928 44 40 5 21 chain 22242 chr9 141213431 + 104378942 104379186 L1PA2 6032 + 5788 6032 119160 244 chain 34063 chr9 141213431 + 104379929 104380310 L1PA2 6032 - 0 382 77522 103 0 1 278 chain 55108 chr9 141213431 + 104386508 104387108 L1PA3long 6157 - 0 600 55638 600 chain 58641 chr9 141213431 + 104403411 104404072 L1PA4 6152 + 5484 6151 53611 324 3 9 334 chain 69317 chr9 141213431 + 104443983 104444727 L1HS 6032 - 0 744 48674 744 chain 122771 chr9 141213431 + 104483709 104485247 THE1A-int 1579 + 0 1559 30124 362 1 0 140 0 1 154 0 18 32 0 1 115 1 0 171 0 2 369 0 1 193 chain 132979 chr9 141213431 + 104485407 104486958 LTR12C 1709 - 0 1709 27426 481 0 4 88 5 0 18 3 160 121 1 0 609 5 12 174 5 1 41 chain 29532 chr9 141213431 + 104540994 104541304 AluYa5 310 - 0 310 86513 310 chain 15552 chr9 141213431 + 104562358 104562540 L1PA4 6152 - 6 187 139724 142 2 1 38 chain 122796 chr9 141213431 + 104569214 104570798 THE1A-int 1579 + 0 1579 30118 15 13 10 536 1 0 160 0 9 7 15 6 342 1 0 288 0 1 4 1 0 201 chain 28566 chr9 141213431 + 104571634 104572001 MLT2A1 477 + 0 374 90895 46 0 2 90 0 1 23 8 12 200 chain 9742 chr9 141213431 + 104573833 104573981 L1PA15 4387 - 203 354 161881 51 7 11 15 4 3 71 chain 501128 chr9 141213431 + 104577507 104584260 L1PA7 6471 + 3 6465 6781 225 59 60 69 13 14 39 4 7 366 4 6 26 1 0 73 7 5 275 4 8 152 6 7 93 3 9 21 13 14 490 0 1 590 17 18 54 30 15 210 317 0 72 0 1 529 0 3 89 0 4 17 0 1 195 0 3 63 4 5 683 4 6 302 0 8 124 1 0 666 1 0 18 0 1 655 27 28 142 chain 168673 chr9 141213431 + 104592294 104594177 L1PA3long 6157 + 4275 6157 22201 433 0 1 679 2 0 659 0 3 5 8 5 97 chain 4604 chr9 141213431 + 104597881 104598016 MER44D 709 + 570 701 199581 34 4 0 13 59 59 25 chain 236187 chr9 141213431 + 104599065 104602169 L1PA8 5853 + 2719 5791 16967 150 1 2 16 0 1 41 0 4 14 8 12 6 0 2 12 0 9 229 48 1 176 2 1 248 0 1 726 1 0 151 1 2 110 1 0 375 3 1 75 0 2 7 0 1 349 0 1 120 1 0 46 2 0 72 13 11 44 7 6 16 1 0 32 chain 69194 chr9 141213431 + 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1 204 24 23 615 chain 157542 chr9 141213431 + 104893186 104895146 L1PA4 6152 + 70 2049 23615 203 0 2 221 0 14 57 5 6 157 1 0 143 0 2 499 0 1 674 chain 115149 chr9 141213431 + 104895579 104897218 L1PA8 5853 + 4210 5836 32737 361 8 11 143 1 2 38 1 2 160 0 1 81 0 2 71 0 2 86 5 6 18 15 17 177 4 6 170 1 0 40 28 4 62 39 36 33 1 2 19 6 5 71 chain 539578 chr9 141213431 + 104910033 104916046 L1PA3long 6157 - 8 6153 2887 5243 1 129 252 0 3 48 0 1 318 3 4 26 1 0 121 chain 391421 chr9 141213431 + 104932083 104936921 L1PA5 6144 - 0 6141 10413 338 0 1 285 0 1 324 0 7 203 230 1329 461 0 1 24 1 0 735 7 11 83 2 1 145 0 2 34 7 8 932 1 0 79 0 1 712 10 199 225 chain 26515 chr9 141213431 + 104943721 104944032 AluYk4 311 + 0 311 97991 311 chain 7070 chr9 141213431 + 104952346 104952425 L1PA5 6144 - 4 83 176943 79 chain 537314 chr9 141213431 + 104980193 104986206 L1PA3long 6157 - 0 6149 3275 184 0 1 1267 0 1 604 0 2 1562 0 3 1627 10 138 615 0 1 144 chain 14823 chr9 141213431 + 105046960 105047230 L1PB1 5432 + 5175 5420 141873 45 3 2 14 1 0 44 1 0 16 2 0 6 17 6 19 2 0 5 1 0 14 2 0 24 1 0 14 2 1 6 1 0 13 1 0 16 chain 4988 chr9 141213431 + 105057659 105057736 MADE1 96 - 0 93 195272 47 9 25 21 chain 29767 chr9 141213431 + 105075189 105075601 THE1B-int 1605 + 37 521 85587 237 0 6 98 22 86 41 0 2 14 chain 297102 chr9 141213431 + 105079573 105082885 L1PA3long 6157 + 2838 6157 13579 395 1 0 684 0 1 1221 0 1 396 1 0 287 0 1 59 0 2 19 0 4 249 chain 529235 chr9 141213431 + 105099489 105105634 L1PA5 6144 + 0 6144 4271 643 26 4 385 1 4 334 1 0 63 1 0 62 12 10 332 0 4 538 0 4 137 0 3 511 1 8 678 1 0 1372 0 1 198 0 4 849 chain 87711 chr9 141213431 + 105111770 105112840 L1PA7 6471 + 5396 6467 40482 196 1 2 27 1 0 89 1 0 53 0 1 48 0 1 30 0 2 601 0 1 7 3 0 13 chain 73837 chr9 141213431 + 105117891 105118925 MER11A 1151 + 7 1151 46600 72 0 8 141 1 0 66 0 11 21 0 2 150 0 4 49 0 13 65 6 5 68 6 9 12 1 2 37 1 5 70 0 1 16 1 59 101 12 13 58 1 7 15 1 0 59 0 1 4 chain 14546 chr9 141213431 + 105127785 105127997 L1PA8 5853 - 0 209 142735 93 18 16 65 2 1 34 chain 36287 chr9 141213431 + 105130198 105130669 MER9a3 513 + 39 513 74519 72 0 1 144 5 4 175 0 1 18 0 2 57 chain 145257 chr9 141213431 + 105141384 105143260 L1PA7 6471 - 2 1882 25284 12 3 0 18 0 1 81 0 21 21 1 0 183 0 1 318 32 11 182 1 4 110 0 1 556 4 3 274 0 4 43 1 0 36 chain 40085 chr9 141213431 + 105145245 105145690 L1PA4 6152 - 9 452 69203 143 2 0 300 chain 6045 chr9 141213431 + 105145690 105145755 L1P2 5180 + 1605 1670 184848 65 chain 47512 chr9 141213431 + 105147524 105148061 L1PA3long 6157 + 5619 6156 60834 537 chain 72463 chr9 141213431 + 105153675 105154647 L1PB 1623 - 257 1213 47281 58 38 10 18 8 13 397 1 2 87 0 1 19 0 5 69 0 1 201 1 0 75 chain 9538 chr9 141213431 + 105154714 105154830 L1PB1 5432 + 4987 5103 162894 116 chain 23836 chr9 141213431 + 105156409 105156696 L1PA5 6144 + 5858 6142 111273 277 3 0 7 chain 35587 chr9 141213431 + 105159831 105160296 MER75 514 + 38 503 75427 61 12 12 301 1 0 86 0 1 4 chain 11885 chr9 141213431 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105244181 L1PA4 6152 + 5909 6146 123079 237 chain 3262 chr9 141213431 + 105248109 105248245 L1PA5 6144 + 5507 5643 57645 136 chain 107037 chr9 141213431 + 105248249 105249784 LTR12C 1709 - 0 1709 34960 84 131 0 324 19 0 73 0 4 106 4 2 4 1 0 85 0 278 365 78 122 63 0 1 198 chain 11778 chr9 141213431 + 105249784 105250275 L1PA5 6144 + 5643 6135 57645 137 1 0 25 0 1 190 0 1 138 chain 6951 chr9 141213431 + 105250417 105250493 L1PA5 6144 + 6052 6128 177801 76 chain 7405 chr9 141213431 + 105250652 105250735 L1PA5 6144 + 6052 6135 174743 83 chain 7351 chr9 141213431 + 105267764 105267846 L1MA3 4352 - 418 500 175082 82 chain 36549 chr9 141213431 + 105286591 105287177 L1PB2 3958 - 120 702 74171 6 0 2 55 2 1 25 2 0 21 0 3 21 0 5 16 1 0 66 1 0 63 11 9 21 8 12 38 0 3 16 1 0 4 3 0 12 2 0 56 15 10 10 1 0 56 2 0 51 chain 40407 chr9 141213431 + 105298278 105298725 L1PA2 6032 + 5584 6032 68725 430 0 1 17 chain 8378 chr9 141213431 + 105334972 105335476 L1MA6 2487 + 1938 2379 168976 51 82 79 52 286 226 33 chain 10513 chr9 141213431 + 105339966 105340081 L1PA3long 6157 - 14 129 158192 115 chain 508477 chr9 141213431 + 105357161 105363249 L1PA5 6144 - 1 6144 6282 766 1 0 83 1 0 282 1 14 448 0 1 200 0 1 306 1 2 218 1 0 421 0 1 236 1 0 819 2 0 36 2 0 237 0 13 645 1 6 93 3 5 68 0 5 66 9 0 69 5 6 548 1 0 73 3 7 298 4 16 13 7 21 120 chain 123297 chr9 141213431 + 105364981 105366612 SVA_B 1603 - 23 1603 29945 605 0 84 107 0 3 3 40 0 26 3 0 78 0 3 159 76 0 441 0 5 22 24 8 16 18 7 13 chain 10151 chr9 141213431 + 105376646 105376946 L1PB1 5432 + 5114 5384 159842 21 1 0 7 5 4 10 2 0 3 2 0 9 2 0 52 2 1 10 16 11 18 63 51 16 2 0 5 1 0 16 2 0 31 0 1 4 chain 42296 chr9 141213431 + 105456432 105456892 L1PA4 6152 - 2461 2922 66164 387 0 1 73 chain 216499 chr9 141213431 + 105456892 105459361 L1PA4 6152 + 3688 6151 18087 6 0 1 420 9 0 513 0 1 1189 0 1 332 chain 74989 chr9 141213431 + 105474830 105475863 MER11A 1151 + 0 1136 46018 79 0 8 103 6 7 33 1 0 64 0 11 227 0 13 128 15 18 12 6 7 33 0 4 87 1 59 171 0 6 15 7 6 45 chain 26979 chr9 141213431 + 105492145 105492530 LTR7 482 - 26 482 96349 121 0 1 38 0 31 43 1 2 105 27 65 50 chain 157526 chr9 141213431 + 105497173 105498971 L1PA5 6144 - 4 1806 23658 109 1 0 486 0 2 258 2 0 649 0 5 293 chain 3599 chr9 141213431 + 105504482 105504525 L1MC1 2226 - 179 222 213653 43 chain 6693 chr9 141213431 + 105522652 105522850 LTR12D 1347 + 643 752 179740 50 102 13 46 chain 104907 chr9 141213431 + 105552969 105554113 L1PA3long 6157 - 322 1465 35524 528 1 0 615 chain 45714 chr9 141213431 + 105554113 105554609 L1PA3long 6157 + 4217 4713 62227 496 chain 50359 chr9 141213431 + 105554689 105555230 L1PA2 6032 - 11 552 58749 541 chain 55983 chr9 141213431 + 105558476 105559179 MER11D 897 + 169 897 55131 403 0 23 121 0 2 179 chain 25266 chr9 141213431 + 105562603 105562892 L1PA4 6152 - 1 289 103385 147 2 1 140 chain 41803 chr9 141213431 + 105564113 105564673 L1PA7 6471 + 5807 6470 66893 170 0 102 53 1 2 164 10 14 5 3 0 135 0 1 8 2 0 9 chain 57728 chr9 141213431 + 105567324 105567964 L1PA3long 6157 - 0 639 54118 633 1 0 6 chain 28955 chr9 141213431 + 105569186 105569632 MLT2A1 477 - 79 477 89203 14 10 12 161 6 7 35 54 2 12 0 1 154 chain 2962 chr9 141213431 + 105569427 105569461 MLT2A1 477 - 274 308 225856 34 chain 427885 chr9 141213431 + 105569632 105575259 HERVL-int 5654 - 0 5654 9353 426 36 14 118 3 2 189 0 3 34 16 39 594 1 0 8 0 3 142 0 2 183 0 2 350 0 2 86 11 12 37 9 22 269 34 37 140 39 0 139 0 1 183 10 23 665 0 1 31 2 24 13 0 1 126 7 9 513 5 4 117 4 6 264 4 0 18 0 2 146 1 0 81 11 10 368 0 1 194 chain 27275 chr9 141213431 + 105575361 105575746 MLT2A1 477 - 92 475 95355 23 1 0 135 0 1 19 13 13 15 13 11 166 chain 43844 chr9 141213431 + 105579893 105580500 L1P3 4156 + 3534 4136 64392 12 0 4 48 2 1 234 4 1 163 7 5 105 2 0 7 2 1 21 chain 8271 chr9 141213431 + 105598811 105598920 L1PA8 5853 - 0 110 169560 86 0 2 5 1 0 17 chain 45096 chr9 141213431 + 105609376 105609906 L1PA5 6144 - 533 1075 62940 83 0 8 330 1 0 43 0 5 73 chain 39453 chr9 141213431 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chr9 141213431 + 105663479 105664228 L1PA7 6471 + 5712 6461 51563 749 chain 114129 chr9 141213431 + 105688956 105690410 L1PA7 6471 + 4974 6444 33060 103 0 12 177 16 19 131 0 1 205 2 0 89 0 3 594 15 15 89 1 0 7 9 0 7 0 9 9 chain 17360 chr9 141213431 + 105691757 105691963 L1PA8 5853 + 5422 5625 134628 142 1 0 44 2 0 17 chain 81743 chr9 141213431 + 105698910 105699961 MER11C 1089 + 0 1063 42876 248 0 1 64 0 4 100 0 2 113 51 52 106 0 4 5 1 0 38 0 1 32 1 0 4 1 2 287 chain 36174 chr9 141213431 + 105731320 105731763 L1PA7 6471 - 2 438 74671 12 7 0 424 chain 5616 chr9 141213431 + 105746211 105746281 MLT1A1 405 + 333 403 188921 70 chain 27120 chr9 141213431 + 105784500 105784787 L1HS 6032 - 3 290 95867 287 chain 248660 chr9 141213431 + 105806918 105809664 L1PA3long 6157 - 3 2754 16329 144 0 1 384 1 0 4 0 1 88 0 1 223 0 1 1360 0 1 78 0 1 464 chain 29248 chr9 141213431 + 105822918 105823222 AluYa5 310 - 6 310 87799 304 chain 4427 chr9 141213431 + 105827900 105827952 L1PB1 5432 - 212 264 201617 52 chain 3366 chr9 141213431 + 105878452 105878488 L1MDa 1598 + 438 474 217740 36 chain 25730 chr9 141213431 + 105906700 105907006 AluY 311 + 2 310 101159 88 0 1 41 0 1 177 chain 7239 chr9 141213431 + 105911027 105911116 L1M1 2793 - 213 302 175839 89 chain 149298 chr9 141213431 + 105917103 105918851 L1P1 4361 + 1424 3100 24716 918 0 1 79 0 3 32 76 0 643 chain 28734 chr9 141213431 + 105924102 105924410 L1PA2 6032 - 697 1005 90190 308 chain 63155 chr9 141213431 + 105924425 105925125 L1PA2 6032 + 5326 6030 51378 466 1 5 233 chain 103384 chr9 141213431 + 105949014 105950391 LTR12C 1709 + 0 1709 35899 73 0 1 128 1 2 69 15 25 116 8 6 21 0 12 11 0 1 101 12 13 154 0 1 60 14 330 100 11 4 319 12 11 69 1 0 82 chain 19875 chr9 141213431 + 105951723 105952103 L1PB1 5432 + 5005 5422 127572 98 1 2 5 0 58 52 2 1 16 1 0 44 1 0 11 70 54 24 1 0 22 2 1 11 1 0 18 chain 44936 chr9 141213431 + 105953308 105953941 MER57-int 2662 - 1887 2563 63129 52 14 11 123 5 40 88 5 11 113 0 2 22 2 0 71 0 4 95 0 2 33 1 0 9 chain 85972 chr9 141213431 + 105973513 105974568 MER11C 1089 - 4 1089 41164 310 0 7 169 9 10 252 1 18 52 0 3 64 0 2 198 chain 103330 chr9 141213431 + 105975155 105976320 L1PA4 6152 + 4980 6143 35914 398 1 0 227 1 0 538 chain 356860 chr9 141213431 + 105999767 106003753 L1HS 6032 + 1 3987 11437 248 8 7 451 0 1 3279 chain 9114 chr9 141213431 + 106003765 106003869 L1PA2 6032 + 5926 6030 164996 104 chain 26722 chr9 141213431 + 106025154 106025546 MLT2A1 477 + 0 415 97251 139 3 0 5 21 29 42 0 38 132 8 0 6 12 0 24 chain 110008 chr9 141213431 + 106048122 106049363 L1PA4 6152 + 4907 6152 34216 566 1 2 519 7 10 148 chain 83147 chr9 141213431 + 106056331 106057294 LTR13A 966 - 1 966 42276 194 1 2 365 0 1 403 chain 3777 chr9 141213431 + 106059325 106059371 MLT1D 503 + 126 172 210705 46 chain 111370 chr9 141213431 + 106073832 106075074 L1PA4 6152 - 0 1243 33844 55 1 2 1186 chain 23302 chr9 141213431 + 106075074 106075335 L1PA4 6152 + 4597 4858 112256 261 chain 9362 chr9 141213431 + 106081260 106081370 L1PA2 6032 - 2 112 163743 110 chain 35545 chr9 141213431 + 106089589 106089973 L1PA3long 6157 + 5773 6157 75481 384 chain 169550 chr9 141213431 + 106118527 106120395 L1PA3long 6157 + 4299 6156 22109 1008 1 0 378 10 0 471 chain 29444 chr9 141213431 + 106132548 106132859 AluYa5 310 + 0 310 86879 132 1 0 178 chain 3175 chr9 141213431 + 106144314 106144353 L1MDb 1215 - 1001 1039 221424 14 1 0 24 chain 34809 chr9 141213431 + 106190959 106191442 LTR3B_ 500 - 17 500 76457 49 5 4 21 0 2 105 1 0 180 8 16 10 13 5 91 chain 525247 chr9 141213431 + 106195877 106201951 L1PA5 6144 - 3 6144 4664 138 7 9 1746 0 1 384 0 1 1549 1 0 810 0 58 210 0 1 151 0 6 7 7 1 437 0 3 53 0 1 370 1 2 203 chain 119735 chr9 141213431 + 106215681 106217036 L1P1 4361 - 33 1388 31138 23 1 0 71 0 1 82 1 0 218 1 2 256 1 0 527 0 1 174 chain 28740 chr9 141213431 + 106217036 106217359 L1PA4 6152 + 5828 6151 90168 323 chain 35380 chr9 141213431 + 106222989 106223493 LTR10D 510 + 6 510 75693 62 9 13 18 2 0 133 13 15 23 3 1 144 3 1 94 chain 360497 chr9 141213431 + 106228061 106233336 L1PB1 5432 - 12 5349 11350 16 1 0 13 1 0 13 1 9 7 9 0 18 2 0 12 8 5 18 17 9 4 1 0 15 1 0 44 1 0 16 2 1 51 2 0 11 18 9 8 0 3 24 1 0 8 7 6 97 1 0 5 3 4 37 0 1 115 22 29 8 2 0 95 0 1 72 0 7 11 5 9 183 0 1 43 43 8 146 5 44 254 0 3 103 0 4 89 5 6 626 0 1 31 0 3 222 1 0 46 4 5 297 6 0 39 6 9 26 1 2 39 1 0 103 0 9 254 2 0 5 6 8 265 9 36 93 0 5 54 0 8 120 59 54 75 81 82 397 6 18 29 4 0 130 6 7 9 0 10 8 15 0 168 6 16 238 40 41 54 chain 13373 chr9 141213431 + 106245659 106245822 THE1D-int 1627 + 25 188 146806 163 chain 104630 chr9 141213431 + 106252294 106253458 L1PA3long 6157 - 0 1168 35586 849 0 4 315 chain 66196 chr9 141213431 + 106253458 106254192 L1PA3long 6157 + 4256 4990 49962 734 chain 44138 chr9 141213431 + 106271619 106272222 HSMAR1 1287 + 0 622 64032 28 0 15 73 4 9 235 6 9 9 0 1 185 11 6 52 chain 3094 chr9 141213431 + 106300972 106301012 L1PA15 4387 + 3176 3216 223035 40 chain 6611 chr9 141213431 + 106320129 106320272 L1PA13 3608 - 165 279 180368 40 9 7 4 1 0 4 1 0 26 24 0 27 1 0 6 chain 152567 chr9 141213431 + 106354725 106356431 L1PA4 6152 - 0 1712 24277 725 0 6 981 chain 549660 chr9 141213431 + 106368572 106374711 L1PA3long 6157 - 8 6153 1497 861 0 4 1742 0 2 107 1 0 245 1 2 496 1 0 1614 1 2 500 0 1 20 1 0 549 chain 9242 chr9 141213431 + 106383005 106383132 L1MA1 4479 + 3981 4107 164338 97 1 0 29 chain 22424 chr9 141213431 + 106384270 106384645 THE1C 375 - 0 375 118359 26 1 0 159 1 0 6 1 2 29 65 66 87 chain 10180 chr9 141213431 + 106396619 106396738 L1PA5 6144 + 6020 6139 159713 119 chain 98928 chr9 141213431 + 106412706 106413808 L1PA4 6152 + 5048 6151 37043 769 0 1 333 chain 20356 chr9 141213431 + 106465927 106466258 L1PA17 2846 + 2313 2641 126046 71 2 1 15 0 4 102 6 8 6 7 0 15 1 0 66 6 5 15 0 2 8 1 0 10 chain 36488 chr9 141213431 + 106472364 106472762 L1PA3long 6157 - 206 604 74257 398 chain 17109 chr9 141213431 + 106472762 106472966 L1PA3long 6157 + 5951 6157 135286 189 3 5 12 chain 190243 chr9 141213431 + 106478666 106480752 L1PA3long 6157 - 0 2087 20022 1353 0 1 733 chain 3661 chr9 141213431 + 106483287 106483426 MER31B 477 - 341 477 212568 32 81 78 26 chain 76362 chr9 141213431 + 106501717 106502527 L1HS 6032 - 0 810 45283 810 chain 228184 chr9 141213431 + 106512612 106515157 L1PA3long 6157 - 0 2555 17405 488 0 10 1240 1 2 263 5 4 548 chain 75550 chr9 141213431 + 106515157 106515988 L1PA3long 6157 + 2764 3596 45630 533 0 1 298 chain 28056 chr9 141213431 + 106516312 106516797 MLT2A1 477 + 0 477 92804 122 4 3 19 5 9 15 5 2 11 0 1 108 3 4 38 8 0 43 63 61 41 chain 31654 chr9 141213431 + 106525190 106525673 LTR2 463 + 0 463 81397 195 58 38 36 2 1 92 12 13 88 chain 24529 chr9 141213431 + 106563581 106563879 AluSp 311 + 8 308 107378 18 0 1 209 0 1 71 chain 4224 chr9 141213431 + 106568933 106568984 L1PA6 6164 + 6109 6160 204240 51 chain 41483 chr9 141213431 + 106586745 106587235 MER9a3 513 - 0 513 67301 68 2 0 126 0 7 25 0 18 269 chain 7215 chr9 141213431 + 106594692 106594771 L1PA5 6144 + 6053 6132 175966 79 chain 68914 chr9 141213431 + 106594858 106595663 L1PA4 6152 - 9 814 48854 138 3 1 11 9 11 644 chain 19393 chr9 141213431 + 106622126 106622351 L1HS 6032 - 4493 4718 128966 225 chain 396205 chr9 141213431 + 106622353 106626846 L1PA4 6152 + 1664 6152 10231 1231 0 1 1447 0 8 278 1 0 44 2 0 630 1 5 510 1 0 20 5 1 8 10 0 305 chain 58744 chr9 141213431 + 106631541 106632190 L1PA4 6152 - 9 658 53552 649 chain 4766 chr9 141213431 + 106635312 106635395 LTR1 825 - 728 812 197743 14 18 19 51 chain 3020 chr9 141213431 + 106653999 106654041 L1MB7 1623 - 545 586 224603 26 1 0 15 chain 18991 chr9 141213431 + 106654233 106654541 L1PA14 3548 + 3156 3456 130135 8 3 0 57 1 0 19 0 6 86 4 3 6 4 0 39 2 0 13 1 0 5 9 8 9 1 0 41 chain 64212 chr9 141213431 + 106709541 106710230 L1PA2 6032 + 5338 6028 50906 4 0 1 685 chain 9801 chr9 141213431 + 106722424 106722551 MER2 342 - 84 211 161585 127 chain 89096 chr9 141213431 + 106728596 106729902 L1PA14 3548 - 79 1391 39969 4 1 0 10 6 0 41 1 0 18 7 5 13 4 2 33 16 11 111 1 0 84 25 27 105 2 0 4 2 0 43 0 6 13 3 1 240 0 18 87 6 7 50 2 1 49 0 2 308 0 2 17 chain 112435 chr9 141213431 + 106733715 106735059 L1PA8A 6298 - 8 1378 33554 105 1 0 189 0 10 118 0 9 285 1 4 78 0 3 228 0 2 339 chain 15195 chr9 141213431 + 106739845 106740036 L1PA6 6164 + 5964 6154 140787 45 1 0 145 chain 42415 chr9 141213431 + 106756494 106757204 L1PB1 5432 + 4738 5422 66128 56 0 8 301 1 2 9 9 0 8 1 5 7 1 0 10 1 0 14 5 1 9 2 0 21 0 2 29 3 2 14 1 0 45 1 0 15 2 0 6 44 31 13 2 0 24 1 0 23 1 0 11 1 0 14 1 0 4 chain 70861 chr9 141213431 + 106774190 106774977 L1PA3long 6157 - 10 798 47983 323 0 1 464 chain 36461 chr9 141213431 + 106774977 106775375 L1PA3long 6157 + 4990 5389 74168 393 0 1 5 chain 57906 chr9 141213431 + 106777304 106777959 L1P1 4361 - 443 1102 54034 553 0 4 102 chain 29374 chr9 141213431 + 106777959 106778287 L1PA4 6152 + 5446 5774 87189 328 chain 29986 chr9 141213431 + 106778287 106778637 L1PA4 6152 + 5792 6143 84847 105 4 5 241 chain 68597 chr9 141213431 + 106802653 106803408 L1PA3long 6157 + 5400 6157 48988 18 0 1 714 0 1 23 chain 23577 chr9 141213431 + 106804476 106804739 L1PA4 6152 + 5888 6151 112700 263 chain 38807 chr9 141213431 + 106813684 106814135 L1PA3long 6157 - 14 461 71011 261 9 5 181 chain 53412 chr9 141213431 + 106814135 106814718 L1PA3long 6157 + 5103 5686 56750 583 chain 54643 chr9 141213431 + 106816023 106816731 L1P2 5180 - 2655 3363 55844 139 0 1 65 16 9 40 0 1 414 1 6 33 chain 244535 chr9 141213431 + 106816731 106821632 L1PA7 6471 + 3503 6461 16529 20 8 9 80 1 0 22 0 1 199 1 2 118 0 10 248 1 2 161 0 1 109 0 1 469 1 0 339 0 1 106 1950 0 877 17 9 174 chain 68129 chr9 141213431 + 106818836 106819673 L1PA7 6471 + 5621 6456 49194 89 2 0 586 31 31 129 chain 18424 chr9 141213431 + 106820243 106820456 L1PA7 6471 + 5080 5294 131706 8 0 1 205 chain 5145 chr9 141213431 + 106820456 106820516 L1PA7 6471 + 5295 5354 193592 54 1 0 5 chain 57685 chr9 141213431 + 106824134 106824756 L1PA2 6032 - 1310 1932 54095 622 chain 116765 chr9 141213431 + 106824756 106826037 L1PA2 6032 + 4738 6019 32204 43 0 1 994 1 0 243 chain 74387 chr9 141213431 + 106841706 106843143 MER41-int 2638 - 1217 2552 46325 49 0 1 44 1 0 5 3 2 101 0 1 180 0 1 4 2 0 136 156 88 15 35 32 89 2 1 63 1 0 19 1 0 104 26 25 7 1 0 50 7 9 66 1 3 35 3 0 36 13 8 11 6 8 9 3 2 4 1 0 30 103 82 15 chain 44772 chr9 141213431 + 106846637 106847220 MER41B 635 - 36 624 63315 131 0 3 4 4 0 15 0 3 265 11 13 38 1 2 114 chain 24601 chr9 141213431 + 106891506 106891799 AluSp 311 + 5 298 106989 293 chain 8082 chr9 141213431 + 106893693 106893792 L1PA8 5853 + 5741 5847 170587 13 0 7 86 chain 54181 chr9 141213431 + 106957288 106958003 LTR12 884 + 0 884 56241 159 9 77 141 2 0 72 3 0 5 25 28 76 0 103 223 chain 12656 chr9 141213431 + 106963346 106963604 LTR12C 1709 + 932 1159 149623 113 6 47 20 78 6 41 chain 2412 chr9 141213431 + 106963656 106963738 LTR12C 1709 + 885 1045 154179 10 29 107 43 chain 534535 chr9 141213431 + 106977463 106983730 L1PA5 6144 - 0 6137 3647 131 0 1 5 0 7 9 8 1 607 0 1 87 0 4 1350 0 1 220 1 0 1351 0 8 128 6 20 231 161 1 548 0 1 404 0 1 1020 chain 144770 chr9 141213431 + 106996513 106998351 SVA_A 1864 - 0 1854 25359 582 2 0 35 12 10 28 3 1 37 30 27 82 3 1 37 2 0 36 3 38 36 3 1 17 0 36 92 1 3 38 2 0 146 7 9 41 37 0 443 6 1 77 chain 1771 chr9 141213431 + 106997214 106997241 SVA_A 1864 - 951 978 70614 27 chain 2128 chr9 141213431 + 106997788 106997825 SVA_A 1864 - 993 1030 72740 37 chain 32243 chr9 141213431 + 107017486 107017945 MER4A1 472 + 2 472 80455 13 4 7 8 1 0 11 0 7 137 20 20 195 2 4 68 chain 4005 chr9 141213431 + 107021576 107021621 MER4A1 472 + 413 458 207317 45 chain 11687 chr9 141213431 + 107036837 107036965 L1PA4 6152 + 6013 6141 153531 128 chain 12493 chr9 141213431 + 107052433 107052571 L1PA3long 6157 + 6019 6157 150275 138 chain 3420 chr9 141213431 + 107060525 107060561 L1PB3 3668 + 3530 3566 216761 36 chain 12382 chr9 141213431 + 107066601 107066745 MSTA 426 + 276 420 150699 144 chain 471337 chr9 141213431 + 107067011 107073661 L1PA8A 6298 + 45 6292 7994 13 36 24 4 0 1 11 3 0 21 64 52 6 1 0 10 2 0 17 2 0 4 1 0 13 1 0 8 1 0 6 1 0 8 1 0 14 4 0 8 1 0 42 30 23 77 3 1 18 1 0 6 1 0 4 1 0 38 5 4 136 6 5 211 0 9 84 4 5 168 18 20 14 3 0 11 1 0 44 0 1 17 0 1 18 10 2 83 4 0 141 0 1 178 0 1 39 1 0 260 0 1 16 3 0 553 27 11 461 0 4 393 5 0 88 0 2 35 328 0 58 6 10 4 1 0 306 1 0 8 0 2 514 0 4 303 22 12 106 0 1 4 1 0 332 0 1 51 1 2 286 22 18 582 7 6 81 14 15 45 0 1 22 0 1 26 chain 113116 chr9 141213431 + 107078381 107079714 SVA_A 1864 + 42 1864 33346 61 5 4 296 0 116 147 1 375 823 chain 23008 chr9 141213431 + 107087546 107087830 AluY 311 + 16 299 115585 114 1 2 153 2 0 14 chain 36372 chr9 141213431 + 107089368 107089876 MER41A 554 + 0 554 74397 37 11 10 12 0 10 69 18 32 270 0 23 91 chain 23894 chr9 141213431 + 107109418 107109707 AluY 311 + 0 292 110929 9 0 2 121 0 1 159 chain 24609 chr9 141213431 + 107117016 107117295 L1PA4 6152 + 5864 6143 106940 279 chain 13391 chr9 141213431 + 107124798 107124997 LTR12C 1709 - 600 799 146750 17 15 0 7 2 17 158 chain 32628 chr9 141213431 + 107126247 107126675 LTR12F 595 - 0 595 79802 230 0 1 38 3 2 60 6 173 91 chain 4265 chr9 141213431 + 107139693 107139742 MADE1 96 + 47 96 203688 49 chain 21978 chr9 141213431 + 107139780 107140048 AluY 311 + 19 299 120323 76 12 23 8 0 1 172 chain 39963 chr9 141213431 + 107141962 107142458 MLT2A2 560 + 17 547 69377 184 0 1 96 7 9 98 0 31 111 chain 76039 chr9 141213431 + 107156801 107157673 MER11D 897 - 0 897 45455 281 0 23 306 0 1 186 1 2 98 chain 203723 chr9 141213431 + 107175146 107177820 MER4-int 2692 + 1 2692 18943 14 1 0 8 0 13 63 2 0 15 1 0 4 5 0 400 0 1 139 0 1 125 0 13 622 0 1 38 14 15 59 9 24 168 0 1 295 0 1 124 3 14 31 36 0 82 1 8 6 4 0 11 5 6 389 chain 29405 chr9 141213431 + 107177828 107178267 MER4A1 472 + 0 462 87041 68 0 14 137 5 27 17 33 12 9 0 7 78 4 5 88 chain 14945 chr9 141213431 + 107189542 107189704 L1PA5 6144 - 904 1066 141213 162 chain 77323 chr9 141213431 + 107189704 107190585 L1PA5 6144 + 5262 6143 44822 881 chain 10355 chr9 141213431 + 107192324 107192504 THE1-int 844 + 11 189 158884 8 1 0 24 2 1 7 1 0 28 0 3 25 1 0 9 11 10 63 chain 156247 chr9 141213431 + 107200555 107202532 L1PA10 4194 - 33 1992 23826 11 1 0 33 3 0 411 0 1 4 1 0 24 5 4 717 1 0 40 0 1 37 17 0 239 0 4 5 0 1 390 2 1 36 chain 36350 chr9 141213431 + 107206869 107207386 MLT2A2 560 + 0 546 74433 117 0 1 76 11 14 82 2 3 37 6 15 54 3 14 74 8 11 4 0 1 43 chain 110106 chr9 141213431 + 107251503 107252890 SVA_B 1603 - 5 1603 34179 529 0 37 25 29 194 22 3 0 5 35 1 32 2 0 27 0 40 639 19 28 6 1 0 13 chain 2599 chr9 141213431 + 107252057 107252086 SVA_B 1603 - 994 1023 127177 29 chain 3137 chr9 141213431 + 107252116 107252151 SVA_B 1603 - 1053 1088 127177 35 chain 37656 chr9 141213431 + 107263315 107263814 L1PA8 5853 - 0 491 72609 47 1 0 46 1 0 19 2 1 51 1 0 10 2 1 70 2 0 35 10 9 202 chain 23705 chr9 141213431 + 107274144 107274426 AluSx4 309 + 11 298 112006 74 0 5 208 chain 105086 chr9 141213431 + 107282151 107283506 L1P3 4156 + 5 1367 35480 238 0 1 7 1 0 69 11 10 79 11 3 162 3 0 675 13 32 86 chain 2874 chr9 141213431 + 107286558 107286588 THE1B 368 - 328 358 227460 30 chain 22120 chr9 141213431 + 107319842 107320120 PABL_A 660 + 16 303 119706 81 3 11 43 0 1 151 chain 156377 chr9 141213431 + 107320276 107323601 L1PB1 5432 + 3135 5422 23815 158 0 8 195 789 28 204 2 4 55 0 8 543 0 51 210 34 22 62 311 0 20 0 2 196 9 8 4 0 1 189 7 14 17 1 0 10 1 0 14 4 0 9 3 1 52 6 5 11 1 0 7 1 0 37 1 0 10 33 22 12 34 29 17 1 0 22 1 0 12 1 0 14 1 0 4 chain 30422 chr9 141213431 + 107320629 107321038 L1PA8 5853 + 5449 5853 83649 115 1 0 46 2 0 69 10 9 10 1 2 40 2 1 19 1 0 93 chain 10729 chr9 141213431 + 107373430 107373554 L1PA5 6144 - 0 124 157283 124 chain 75511 chr9 141213431 + 107377065 107377955 L1PA6 6164 + 5266 6162 45763 76 0 2 210 0 3 208 0 1 396 chain 73519 chr9 141213431 + 107385142 107385988 L1PA5 6144 + 5299 6144 46775 326 1 0 443 10 0 8 0 10 58 chain 26273 chr9 141213431 + 107386378 107386722 THE1A 353 + 7 353 98926 98 6 5 145 1 4 94 chain 123509 chr9 141213431 + 107386722 107388289 THE1A-int 1579 + 0 1577 29876 635 2 3 12 0 3 10 15 19 4 0 1 551 1 2 337 chain 4310 chr9 141213431 + 107388293 107388361 THE1A 353 + 2 76 203095 53 4 10 11 chain 7600 chr9 141213431 + 107388369 107388465 THE1A 353 + 85 180 173545 25 1 0 70 chain 14621 chr9 141213431 + 107388466 107388637 THE1A 353 + 182 353 142522 171 chain 62567 chr9 141213431 + 107402868 107403697 L1PA13 3608 + 2042 2929 51642 49 4 5 130 0 4 10 2 1 359 12 70 195 4 0 64 chain 46279 chr9 141213431 + 107403697 107404399 LTR12_ 688 + 0 688 61790 95 25 0 37 6 7 4 0 1 213 1 0 34 0 103 107 93 0 87 chain 23782 chr9 141213431 + 107407620 107407903 L1PA4 6152 - 0 290 111580 6 0 5 217 0 2 60 chain 331697 chr9 141213431 + 107465452 107469574 L1P3 4156 + 0 4139 12141 180 0 10 53 20 19 57 2 1 9 8 6 4 0 1 265 1 0 6 1 0 4 0 2 63 7 8 548 0 2 321 0 1 51 1 6 701 12 13 176 1 0 131 9 1 110 0 1 615 1 0 79 0 9 47 1 0 6 6 7 266 4 7 319 13 10 24 chain 352180 chr9 141213431 + 107478368 107482327 L1PA4 6152 + 2181 6141 11544 2604 0 1 515 10 8 75 1 0 307 0 2 314 1 2 132 chain 298334 chr9 141213431 + 107486486 107490933 L1PBa1 4058 + 10 4040 13513 26 1 0 11 13 10 222 9 0 15 4 8 113 48 47 49 3 6 42 8 7 57 8 7 26 9 3 64 9 10 79 0 2 203 3 2 86 10 11 486 4 3 46 1 0 4 0 6 6 1 0 137 0 4 655 315 3 194 0 5 49 0 1 7 0 6 14 1 0 185 1 0 53 0 4 62 81 6 270 0 1 23 6 1 86 0 3 50 2 1 64 7 0 114 1 0 7 1 0 29 1 0 41 2 0 108 3 1 17 1 0 12 7 0 15 2 0 19 2 1 4 1 0 4 3 0 21 1 0 9 2 1 10 2 0 3 1 0 5 1 0 9 1 0 17 1 0 42 chain 24636 chr9 141213431 + 107493154 107493449 AluY 311 + 11 305 106800 121 0 1 167 2 0 5 chain 31318 chr9 141213431 + 107498228 107498846 L1PB 1623 + 1013 1586 81957 45 10 12 30 16 19 19 1 0 90 3 4 73 14 0 141 1 0 7 2 1 30 1 0 4 3 0 7 11 7 12 69 45 16 2 0 11 chain 6086 chr9 141213431 + 107500131 107500222 L1MB3 1562 + 1463 1552 184528 5 1 0 54 2 1 29 chain 29278 chr9 141213431 + 107512711 107513097 MER51B 395 + 0 395 87658 61 0 6 122 1 0 40 1 0 102 0 4 26 2 3 31 chain 15345 chr9 141213431 + 107525878 107526064 AluY 311 + 98 285 140354 25 1 0 8 0 2 152 chain 3180 chr9 141213431 + 107591003 107591045 MIR3 191 + 76 118 221324 42 chain 25546 chr9 141213431 + 107600612 107600914 AluY 311 + 4 299 102009 122 7 0 173 chain 25892 chr9 141213431 + 107632945 107633378 LTR7 482 - 0 482 100471 176 0 1 9 0 31 8 4 3 31 1 2 10 25 86 19 49 5 101 chain 38076 chr9 141213431 + 107637032 107637444 SVA_C 1631 + 878 1289 72020 140 1 0 271 chain 12622 chr9 141213431 + 107711314 107711533 Tigger3b 1229 - 295 530 149763 70 0 4 61 43 55 45 chain 32876 chr9 141213431 + 107744904 107745706 MER51E 476 + 0 476 79405 41 21 6 253 318 0 48 2 0 23 27 38 6 2 0 61 chain 181569 chr9 141213431 + 107772030 107775997 L1PA16 3655 - 63 3093 20840 14 3 0 170 2 0 118 2 0 89 9 8 154 0 1 107 15 14 19 1 0 45 0 2 175 3 2 13 309 3 284 2 0 135 1 0 7 0 1 126 6 7 44 22 48 5 3 0 43 7 26 38 38 51 41 7 6 22 305 0 167 0 2 61 0 8 49 0 1 5 660 310 63 1 0 241 3 0 6 1 0 68 35 12 17 1 0 4 0 1 122 20 16 59 chain 25092 chr9 141213431 + 107782842 107783171 L1PA16 3655 + 3205 3536 104337 42 1 0 42 3 1 225 0 5 16 chain 13559 chr9 141213431 + 107816019 107816181 LTR26 622 + 458 620 146138 162 chain 12838 chr9 141213431 + 107822850 107823035 LTR26 622 + 434 622 148896 11 0 2 60 14 15 100 chain 258513 chr9 141213431 + 107846993 107849923 L1PA6 6164 - 6 2947 15780 617 0 1 129 4 8 88 1 0 946 0 4 1098 0 3 47 chain 45269 chr9 141213431 + 107883931 107884498 LTR19B 566 - 0 566 62748 118 1 3 11 0 2 134 1 2 100 6 1 50 1 0 145 chain 44110 chr9 141213431 + 107896587 107897140 MER41A 554 + 0 554 64074 128 0 1 230 7 8 181 1 0 6 chain 13392 chr9 141213431 + 107906338 107906517 Tigger3a 397 + 139 311 146748 161 7 0 11 chain 8316 chr9 141213431 + 107907148 107907377 L1MB3 1562 + 1290 1492 169298 62 11 10 20 87 62 39 1 0 9 chain 24606 chr9 141213431 + 107924039 107924326 AluY 311 + 3 295 106959 131 0 5 156 chain 6451 chr9 141213431 + 107930272 107930464 MLT2B4 540 - 100 241 181633 29 77 27 43 15 14 28 chain 21766 chr9 141213431 + 107949134 107949388 AluSp 311 - 35 290 121150 79 0 1 175 chain 3562 chr9 141213431 + 107950395 107950439 L1PA12 2803 - 1083 1127 214289 44 chain 23265 chr9 141213431 + 107992161 107992438 AluSq2 311 + 15 290 114361 119 2 0 156 chain 28092 chr9 141213431 + 108047760 108048162 LTR7B 505 - 7 484 92675 44 14 13 35 0 2 15 1 2 25 1 0 82 0 2 27 14 76 60 0 10 84 chain 9288 chr9 141213431 + 108102503 108102638 L1MB3 1562 + 1269 1415 164116 82 1 0 13 7 19 32 chain 22668 chr9 141213431 + 108133734 108134022 AluY 311 + 8 305 117224 40 3 0 5 5 4 75 0 1 5 0 12 155 chain 15504 chr9 141213431 + 108161112 108161335 MER30 238 - 0 238 139878 42 3 0 70 10 20 9 0 7 6 0 1 83 chain 553118 chr9 141213431 + 108251787 108257928 L1PA3long 6157 - 0 6153 1056 19 1 0 319 0 1 1461 1 9 736 0 1 440 1 0 2244 0 1 182 4 3 126 0 4 607 chain 11359 chr9 141213431 + 108266904 108267051 MER2 342 - 50 204 154863 29 0 3 10 0 4 108 chain 299876 chr9 141213431 + 108277672 108282014 L1P2 5180 + 4 4078 13430 146 1 0 75 277 98 28 49 19 76 19 0 59 149 68 166 25 4 43 3 18 135 0 19 7 1 2 4 1 0 73 0 1 4 1 0 511 0 1 151 0 14 282 7 8 1216 13 17 146 0 4 296 0 3 89 0 1 229 0 1 60 chain 166769 chr9 141213431 + 108290003 108292064 L1PA7 6471 + 4386 6470 22423 340 0 5 248 12 20 254 0 2 359 0 3 55 22 31 168 4 0 106 1 0 63 0 1 153 0 1 101 1 2 14 0 2 147 4 0 9 chain 208496 chr9 141213431 + 108305716 108308035 L1PA5 6144 - 0 2331 18606 258 0 1 537 0 3 50 0 4 950 0 4 524 chain 24262 chr9 141213431 + 108321687 108321979 AluSq 315 + 7 299 108889 65 1 0 58 1 2 167 chain 536434 chr9 141213431 + 108325456 108331580 L1PA5 6144 + 3 6144 3388 433 1 0 408 0 3 124 13 14 2357 0 5 538 2 0 450 2 9 953 0 4 690 7 0 9 0 7 137 chain 4637 chr9 141213431 + 108334086 108334304 Tigger4a 237 + 1 236 199238 14 0 32 13 0 104 12 6 0 4 120 0 8 0 7 41 chain 552344 chr9 141213431 + 108338448 108344473 L1PA2 6032 - 1 6031 1155 2799 0 5 3226 chain 10773 chr9 141213431 + 108369903 108370069 L1PA8 5853 - 0 164 157100 92 4 3 15 7 6 48 chain 3644 chr9 141213431 + 108380575 108380615 MADE1 96 + 3 43 212896 40 chain 27426 chr9 141213431 + 108391997 108392304 L1PA5 6144 + 5657 5964 94891 307 chain 15543 chr9 141213431 + 108392312 108392492 L1PA5 6144 + 5964 6144 139754 180 chain 87707 chr9 141213431 + 108393752 108394709 L1PA2 6032 + 5072 6028 40484 940 1 0 16 chain 2974 chr9 141213431 + 108403578 108403609 MER90a 614 - 12 43 225576 31 chain 22752 chr9 141213431 + 108422051 108422331 AluSc 308 + 19 297 116815 112 2 0 166 chain 17496 chr9 141213431 + 108435325 108435609 MER57B1 401 - 128 401 134276 40 21 1 119 25 34 79 chain 14431 chr9 141213431 + 108437280 108437461 AluSp 311 + 120 301 143106 12 1 0 149 0 1 19 chain 14348 chr9 141213431 + 108442654 108442929 MER39B 650 + 0 222 143387 130 58 11 11 21 15 55 chain 28307 chr9 141213431 + 108448024 108448380 L1PA8 5853 + 5505 5853 91912 59 1 0 45 2 0 70 1 0 31 2 0 30 2 1 18 2 1 93 chain 55394 chr9 141213431 + 108465619 108466220 L1PA2 6032 - 292 893 55463 601 chain 26733 chr9 141213431 + 108466220 108466520 L1PA2 6032 + 5726 6026 97211 300 chain 6699 chr9 141213431 + 108476229 108476442 MER52D 1964 + 1103 1205 179697 47 57 9 33 63 0 13 chain 269239 chr9 141213431 + 108490384 108493576 L1PA6 6164 - 8 3232 15219 371 0 4 186 0 2 49 0 8 221 1 0 946 1 5 469 14 22 173 9 14 454 0 1 41 0 1 257 chain 162768 chr9 141213431 + 108493604 108495535 L1PA5 6144 - 16 3522 22971 138 1 0 696 1 0 791 0 1577 304 chain 292302 chr9 141213431 + 108506877 108510189 L1PA4 6152 - 9 3334 13876 251 1 0 322 0 1 597 13 20 455 0 4 601 0 2 1072 chain 19954 chr9 141213431 + 108519568 108519838 L1PB2 3958 - 120 388 127290 63 2 1 9 0 3 11 2 0 70 1 0 64 1 0 47 chain 104905 chr9 141213431 + 108524541 108525684 L1PA3long 6157 - 1 1144 35526 1143 chain 153183 chr9 141213431 + 108525685 108527378 L1PA3long 6157 + 3316 5011 24202 152 0 1 1222 0 1 319 chain 29195 chr9 141213431 + 108529023 108529361 L1PA5 6144 - 0 338 88074 338 chain 553692 chr9 141213431 + 108539341 108545359 L1PA2 6032 - 5 6029 986 93 0 4 1367 0 1 4351 0 1 207 chain 526973 chr9 141213431 + 108547368 108553491 L1PA5 6144 - 16 6141 4504 127 6 7 6 1 0 177 0 1 248 0 1 212 0 1 447 0 4 893 3 0 130 1 0 223 2 0 401 1 0 127 1 0 568 14 12 1386 0 3 547 0 2 163 16 15 186 1 2 96 14 0 9 4 18 113 chain 37942 chr9 141213431 + 108572535 108573024 MER9a3 513 - 0 513 72218 79 0 1 95 9 29 4 0 1 48 1 0 78 0 1 157 0 2 18 chain 111901 chr9 141213431 + 108575591 108576816 L1PA3long 6157 - 3 1229 33691 139 0 1 1086 chain 88372 chr9 141213431 + 108588652 108590070 L1M1 2793 - 112 1545 40232 8 1 0 15 0 8 18 16 15 117 2 0 9 9 11 26 7 0 21 7 4 96 2 3 18 0 5 80 13 27 31 0 3 43 32 27 18 4 6 101 1 0 14 0 1 4 1 0 114 2 1 20 1 2 143 2 0 81 0 3 59 10 14 84 1 0 61 14 18 61 29 21 22 chain 3090 chr9 141213431 + 108592356 108592441 L1MC 810 - 99 187 223090 36 35 38 14 chain 13817 chr9 141213431 + 108606274 108606465 MER30 238 - 6 208 145192 101 9 20 81 chain 48216 chr9 141213431 + 108644561 108645266 L1PA6 6164 - 2 575 60305 8 5 0 66 127 0 499 chain 3331 chr9 141213431 + 108647852 108647921 LTR16A 446 + 280 355 218388 13 18 23 33 0 1 5 chain 291330 chr9 141213431 + 108658147 108662174 L1PA10 4194 - 33 4019 13938 11 1 0 27 10 7 40 2 0 132 6 10 743 1 0 146 0 1 117 1 2 146 1 5 15 0 21 34 1 8 16 0 4 46 1 0 13 44 12 47 0 3 157 0 2 22 7 8 140 0 4 107 1 0 281 0 3 25 1 0 274 6 8 119 1 0 13 0 3 233 2 0 139 0 3 103 0 1 5 1 2 189 13 14 216 4 2 66 0 2 5 22 14 13 5 0 8 1 0 11 9 7 21 2 0 22 1 0 7 46 20 15 2 0 21 1 0 9 64 50 16 chain 76532 chr9 141213431 + 108695303 108696327 MER11A 1151 + 0 1151 45196 55 0 99 22 8 0 54 0 4 58 8 4 147 0 1 94 0 1 145 5 6 141 21 52 37 0 1 59 7 8 163 chain 125405 chr9 141213431 + 108709018 108710941 L1PREC2 3366 - 1204 3195 29276 273 1 0 13 10 0 6 1 10 29 0 1 139 0 4 88 24 4 51 0 1 40 0 8 35 4 5 140 4 7 15 2 1 14 45 48 24 1 4 62 0 1 224 1 0 4 26 109 284 4 7 43 2 1 58 0 1 5 15 11 21 8 7 72 2 1 33 1 0 4 2 0 9 1 0 13 1 0 20 1 0 10 7 2 20 2 0 9 chain 402596 chr9 141213431 + 108765619 108771327 L1PB1 5432 - 12 5355 10010 16 1 0 13 1 0 21 1 0 24 82 65 44 1 0 18 2 1 51 2 0 8 5 1 12 1 0 8 1 0 18 1 0 3 2 0 7 0 22 110 0 1 12 0 1 272 1 0 62 2 1 83 2 1 93 0 1 6 2 0 219 0 1 491 3 0 676 333 0 216 1 0 7 0 1 381 0 1 64 1 5 159 0 1 56 1 0 408 16 5 72 8 13 220 0 5 47 2 0 544 0 3 88 0 1 122 0 1 234 10 11 25 5 6 84 13 64 14 125 48 75 chain 4236 chr9 141213431 + 108771148 108771196 L1PB1 5432 + 125 173 204083 48 chain 3653 chr9 141213431 + 108775919 108775959 MER53 195 + 1 41 212737 40 chain 74550 chr9 141213431 + 108792024 108793103 MER11A 1151 + 0 1151 46238 55 0 99 76 0 4 4 0 1 55 4 0 32 0 2 73 2 0 27 15 16 94 0 1 143 5 8 120 0 26 26 43 0 24 24 6 28 0 1 60 6 7 163 chain 291536 chr9 141213431 + 108802706 108806314 HERVL-int 5654 - 0 3630 13928 90 10 24 22 1 2 80 0 2 207 0 1 200 31 21 112 1 0 451 0 1 118 0 2 88 0 2 191 10 11 348 0 3 5 3 0 130 0 5 262 2 0 109 0 1 96 0 1 163 0 4 16 2 0 15 1 0 4 0 1 566 4 7 52 1 0 217 chain 18930 chr9 141213431 + 108806581 108806924 MLT2A2 560 - 109 560 130291 35 1 12 11 0 98 57 81 80 158 chain 20675 chr9 141213431 + 108816077 108816347 L1PA7 6471 - 1 270 125051 97 5 4 48 0 1 12 1 0 107 chain 41048 chr9 141213431 + 108816357 108816834 L1PA7 6471 + 5705 6182 67833 477 chain 300484 chr9 141213431 + 108848594 108852345 L1PA7 6471 - 22 3770 13396 655 0 1 93 0 2 20 0 3 59 8 14 146 34 13 291 3 2 75 15 6 259 0 2 128 0 2 22 0 1 37 34 5 88 0 2 219 0 2 20 0 3 289 0 23 21 0 5 335 0 3 47 2 1 32 1 0 26 3 0 51 0 4 549 0 4 23 1 0 165 chain 14821 chr9 141213431 + 108852345 108852538 L1PA7 6471 + 2487 2678 140975 46 7 5 140 chain 64045 chr9 141213431 + 108855393 108856436 MER11B 1079 + 0 1079 50990 358 0 5 94 18 17 22 24 12 15 0 1 12 1 2 4 0 1 38 48 48 65 90 131 54 0 1 77 0 1 107 5 3 11 chain 33095 chr9 141213431 + 108865706 108866144 MLT2A1 477 + 8 477 79061 161 4 1 215 4 0 9 2 40 43 chain 42713 chr9 141213431 + 108871790 108872328 MLT2A2 560 + 15 560 65758 311 1 0 17 0 1 10 6 2 50 0 11 143 chain 17939 chr9 141213431 + 108880442 108880783 L1PB4 2604 + 2187 2553 133009 81 13 33 78 74 77 7 0 1 17 0 2 8 1 0 62 chain 85658 chr9 141213431 + 108888262 108889225 L1PA5 6144 - 12 979 41289 502 0 1 224 0 3 237 chain 137964 chr9 141213431 + 108909891 108911474 L1PA5 6144 - 7 1601 26486 117 0 1 239 2 0 54 0 6 1134 0 6 37 chain 93086 chr9 141213431 + 108911474 108916309 L1PA5 6144 + 3577 6141 38611 471 0 1 384 3680 1408 300 chain 234954 chr9 141213431 + 108928428 108931019 L1PA3long 6157 - 0 2590 17032 1122 1 0 1468 chain 64573 chr9 141213431 + 108931019 108931730 L1PA3long 6157 + 2854 3565 50767 711 chain 19995 chr9 141213431 + 108932213 108932485 L1PA11 4918 - 455 724 127159 56 2 0 13 7 6 60 1 0 99 0 2 23 1 0 10 chain 29233 chr9 141213431 + 108938487 108938895 L1PA8 5853 - 1 410 87891 92 1 0 19 2 1 41 0 6 9 6 5 69 2 0 41 13 12 41 0 1 72 chain 547368 chr9 141213431 + 108943898 108949922 L1PA2 6032 - 0 6029 1782 4721 1 0 226 0 1 125 0 3 242 0 7 173 4 0 278 1 0 253 chain 21421 chr9 141213431 + 108951235 108951504 L1PA16 3655 - 1094 1363 122442 269 chain 476735 chr9 141213431 + 108960632 108966772 L1PA7 6471 - 2 6454 7839 835 0 1 6 0 5 45 0 1 581 6 5 5 0 1 313 0 8 753 93 0 177 0 1 299 0 3 145 2 0 172 0 1 213 6 10 216 0 1 4 1 0 9 0 83 367 0 4 664 0 110 85 1 0 5 6 7 53 20 20 68 0 1 109 0 1 179 11 15 152 4 14 40 1 2 170 54 224 74 12 11 184 chain 31973 chr9 141213431 + 108971723 108972121 L1PA7 6471 - 1 394 80901 11 2 0 52 0 9 12 11 0 256 1 0 53 chain 29664 chr9 141213431 + 108974329 108974652 L1PA2 6032 - 5 328 85982 323 chain 30964 chr9 141213431 + 108974652 108974995 L1P1 4361 + 3987 4328 82572 164 1 0 154 1 0 23 chain 362505 chr9 141213431 + 109019596 109023778 L1PA5 6144 - 0 6141 11303 11 3 1 142 0 1 870 5 1954 85 0 4 922 1 0 325 0 8 558 0 1 180 6 5 1074 chain 56616 chr9 141213431 + 109081979 109082590 L1PA2 6032 + 5421 6031 54765 349 1 0 261 chain 173584 chr9 141213431 + 109097863 109099911 L1PA6 6164 - 2 2071 21637 8 0 4 850 0 4 312 0 7 237 5 9 219 0 2 417 chain 24504 chr9 141213431 + 109115272 109115727 L1PA15 4387 - 22 463 107525 9 1 0 6 3 0 7 18 16 12 3 1 44 6 3 49 34 34 53 1 0 27 1 0 90 4 5 66 1 0 11 1 0 8 chain 57672 chr9 141213431 + 109126695 109127649 L1PB1 5432 - 6 931 54151 4 1 0 4 1 0 12 0 7 7 1 0 22 1 0 24 2 0 14 9 6 13 8 0 10 12 10 12 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 1 0 20 13 11 197 0 2 39 1 0 28 13 11 13 6 0 7 7 16 28 1 0 54 2 0 82 3 0 125 chain 5387 chr9 141213431 + 109129097 109129295 MLT1A1 405 - 80 287 191127 33 9 19 25 97 97 18 1 0 15 chain 19053 chr9 141213431 + 109133039 109133288 THE1C-int 1605 - 1347 1601 129960 93 4 10 140 2 1 10 chain 38356 chr9 141213431 + 109134890 109135325 L1PA4 6152 - 1 438 71638 316 0 1 4 0 1 115 chain 45871 chr9 141213431 + 109169867 109170363 L1PA3long 6157 + 5661 6157 62152 496 chain 11740 chr9 141213431 + 109196787 109196938 L1PA5 6144 + 5984 6132 153299 80 7 0 21 0 4 43 chain 22298 chr9 141213431 + 109201753 109202065 AluY 311 + 3 297 118917 49 7 6 68 10 0 75 1 0 35 0 1 32 4 0 22 3 0 6 chain 7314 chr9 141213431 + 109204025 109204116 MER53 195 - 100 195 175342 28 0 4 63 chain 272588 chr9 141213431 + 109234614 109237953 L1PA7 6471 - 17 3386 15042 329 0 1 373 0 1 201 0 1 250 0 1 98 0 4 246 12 11 32 0 12 106 1 17 192 0 1 7 12 11 367 0 1 184 1 3 511 0 3 5 13 2 399 chain 84378 chr9 141213431 + 109256033 109257691 L1PA7 6471 - 4 1060 41763 150 0 2 543 13 10 49 0 1 30 293 0 55 309 1 5 1 0 210 chain 103788 chr9 141213431 + 109262722 109264127 LTR12C 1709 - 0 1709 35775 84 1 0 289 0 2 32 0 1 73 11 4 7 24 0 99 3 1 5 0 159 99 0 118 129 4 5 221 0 43 42 35 40 223 1 10 23 chain 108766 chr9 141213431 + 109271643 109272986 L1PA7 6471 - 3 1351 34491 7 4 0 309 0 1 7 0 1 100 0 2 93 1 0 237 1 0 7 1 4 22 1 0 54 0 3 72 0 1 176 0 1 251 chain 53529 chr9 141213431 + 109277347 109278054 L1PA7 6471 - 2 707 56660 47 8 7 46 7 4 44 12 13 174 1 2 368 chain 47358 chr9 141213431 + 109278055 109278625 L1PA7 6471 + 5179 5749 60930 192 1 3 247 0 3 29 6 2 28 1 0 66 chain 4059 chr9 141213431 + 109287728 109287788 L1PB3 3668 + 3508 3566 206495 20 3 1 37 chain 381850 chr9 141213431 + 109300055 109304343 L1PA4 6152 - 0 4300 10705 6 0 5 187 6 5 130 0 1 513 0 1 952 0 4 37 0 1 625 1 2 285 0 1 592 1 0 953 chain 20673 chr9 141213431 + 109309786 109310030 AluSp 311 + 10 269 125061 10 0 15 234 chain 98097 chr9 141213431 + 109310668 109311748 L1PA4 6152 - 11 1099 37257 846 0 1 99 0 7 135 chain 14864 chr9 141213431 + 109311748 109311907 L1PA4 6152 + 4912 5071 141169 159 chain 452071 chr9 141213431 + 109327361 109333833 L1PA8A 6298 + 78 6290 8694 5 0 2 5 0 2 8 3 0 19 25 16 12 2 1 9 2 1 11 2 1 6 1 0 13 2 0 12 86 130 77 5 12 11 6 4 71 6 5 288 11 7 32 0 1 33 0 1 227 1 5 31 2 0 86 0 1 7 9 6 104 0 3 27 7 5 41 0 1 299 1 2 245 0 1 73 0 1 282 1 4 17 6 8 39 0 2 85 16 0 35 1 4 50 1 0 155 319 0 31 5 9 480 8 9 102 17 14 41 34 22 61 0 1 195 0 3 11 0 1 483 0 1 70 0 1 102 13 9 138 4 1 168 3 0 147 4 0 70 2 1 43 1 6 273 0 29 38 18 18 75 0 9 91 16 21 247 6 10 92 1 2 20 0 2 267 7 0 33 1 0 124 chain 17847 chr9 141213431 + 109335290 109335494 L1PA3long 6157 - 1 204 133251 4 1 0 199 chain 86746 chr9 141213431 + 109335494 109336435 L1PA3long 6157 + 5005 5959 40865 358 0 6 366 0 7 217 chain 7504 chr9 141213431 + 109336846 109336986 L1MB3 1562 + 935 1085 174133 36 6 17 39 24 23 35 chain 13008 chr9 141213431 + 109344158 109344408 THE1B 368 - 62 318 148213 63 2 1 23 68 75 94 chain 542259 chr9 141213431 + 109367276 109373410 L1PA5 6144 + 0 6144 2462 250 0 3 616 0 1 1324 0 2 960 0 7 513 1 2 2120 4 0 346 chain 28727 chr9 141213431 + 109412509 109412830 L1PA4 6152 - 1210 1529 87721 313 2 0 6 chain 105759 chr9 141213431 + 109412830 109414028 L1PA4 6152 + 4946 6143 35315 355 1 0 842 chain 41479 chr9 141213431 + 109467324 109467807 L1PA5 6144 - 9 486 67311 105 9 0 25 1 4 343 chain 29995 chr9 141213431 + 109489400 109489785 MLT2A1 477 - 93 477 84825 180 1 2 22 0 1 8 3 0 171 chain 138180 chr9 141213431 + 109525762 109527376 L1PA7 6471 - 5 1655 26458 7 3 0 322 0 1 511 0 4 209 0 1 324 0 34 97 2 1 139 chain 7077 chr9 141213431 + 109532774 109533191 MER33 330 + 187 293 176904 35 309 0 27 1 0 31 1 0 13 chain 23280 chr9 141213431 + 109550006 109550458 MLT2A2 560 - 0 560 114297 55 0 1 5 1 0 86 0 11 12 134 227 144 4 8 11 chain 28796 chr9 141213431 + 109550562 109550969 LTR7 482 + 0 477 89908 54 23 61 109 12 13 29 0 31 180 chain 300195 chr9 141213431 + 109550976 109554875 HERVH-int 3825 + 0 3825 13414 40 5 18 275 1 0 188 15 10 39 2 1 8 2 1 9 14 69 40 2 1 50 0 1 13 0 2 14 0 3 244 0 3 69 0 2 1096 0 1 479 0 1 4 1 0 121 0 35 11 35 0 3 1 0 5 1 2 115 165 0 102 10 29 111 0 1 609 chain 8390 chr9 141213431 + 109565947 109566063 L1MA5A 2387 + 2043 2157 168906 26 1 0 38 1 0 50 chain 518726 chr9 141213431 + 109571468 109577625 L1PA6 6164 + 0 6161 5304 467 1 0 306 0 18 97 0 1 450 7 8 1622 0 5 172 1 0 800 3 0 5 0 3 30 0 1 84 7 0 430 0 2 288 1 2 106 0 1 245 5 6 556 0 2 285 25 5 164 chain 12483 chr9 141213431 + 109584756 109584913 L1PA6 6164 - 2217 2374 149671 157 chain 188293 chr9 141213431 + 109584913 109587140 L1PA6 6164 + 3944 6156 20213 397 0 1 52 0 1 378 22 0 256 1 0 107 0 1 175 0 4 285 0 1 14 3 0 187 0 2 294 1 2 55 chain 22150 chr9 141213431 + 109595474 109596023 L1PREC2 3366 + 2612 3048 119593 139 3 1 54 2 1 43 1 0 4 3 0 10 57 44 13 3 1 23 43 26 24 90 16 37 chain 22794 chr9 141213431 + 109608100 109608393 AluSg7 307 - 9 299 116613 86 9 8 86 2 0 110 chain 384807 chr9 141213431 + 109662538 109667646 L1PB1 5432 - 329 5413 10615 193 0 1 7 8 0 30 1 2 165 0 2 81 0 1 67 6 4 261 0 3 44 34 1 219 0 1 373 0 3 101 14 10 161 0 1 166 2 1 261 7 5 123 1 0 160 1 0 132 0 1 35 9 1 133 6 0 78 0 9 396 0 1 20 1 5 242 0 5 180 15 8 15 1 0 74 0 5 559 0 1 65 0 17 72 3 1 195 5 0 146 2 0 96 16 18 8 0 1 25 10 9 47 9 10 27 chain 6509 chr9 141213431 + 109673786 109673896 MER5A 189 - 76 189 181169 17 20 23 73 chain 23098 chr9 141213431 + 109716409 109716778 THE1D 372 - 0 372 115155 123 42 43 22 22 24 160 chain 245120 chr9 141213431 + 109748938 109752845 L1PB1 5432 - 28 3602 16504 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 19 8 21 1 0 12 9 10 21 1 0 16 2 1 50 3 1 11 7 3 11 1 0 6 1 0 24 65 11 107 9 12 114 0 1 25 33 31 9 2 0 175 0 1 41 0 1 383 0 1 120 8 10 20 404 26 290 5 8 48 3 4 170 6 5 592 23 8 8 0 13 354 3 5 26 9 0 45 9 135 32 20 20 109 2 1 67 0 1 31 0 2 222 chain 82459 chr9 141213431 + 109758096 109759047 L1PA5 6144 - 2 950 42561 7 4 0 133 1 3 5 2 0 424 0 2 274 1 0 100 chain 5160 chr9 141213431 + 109760045 109760357 MER58B 340 + 1 329 193450 18 135 152 40 73 74 11 1 0 7 1 0 26 chain 24475 chr9 141213431 + 109793896 109794273 THE1C 375 + 0 375 107678 58 1 0 4 28 30 82 27 24 177 chain 25776 chr9 141213431 + 109794273 109794607 THE1C-int 1605 + 0 344 100984 16 10 11 80 0 3 219 0 6 9 chain 5728 chr9 141213431 + 109800214 109800331 Tigger3c 601 - 31 147 187866 12 3 0 5 21 23 6 0 2 57 2 0 11 chain 20313 chr9 141213431 + 109804913 109805187 MER58B 340 - 16 293 126199 201 1 4 18 2 1 21 0 1 31 chain 6025 chr9 141213431 + 109813095 109813214 MER5A 189 - 70 188 185022 32 4 5 41 20 18 22 chain 4190 chr9 141213431 + 109848668 109848714 MADE1 96 - 50 96 204684 46 chain 18215 chr9 141213431 + 109857155 109857362 L1PA4 6152 - 9 215 132294 4 1 0 202 chain 25818 chr9 141213431 + 109865331 109865627 AluY 311 + 6 302 100795 296 chain 13695 chr9 141213431 + 109921458 109921648 THE1A 353 + 10 202 145615 70 8 10 6 0 1 13 1 0 92 chain 57645 chr9 141213431 + 109921656 109922358 THE1A-int 1579 + 871 1574 54163 388 0 1 314 chain 28222 chr9 141213431 + 109922363 109922716 THE1A 353 + 0 351 92221 110 1 0 92 1 0 149 chain 4532 chr9 141213431 + 109954532 109954583 MER53 195 - 3 54 200432 51 chain 6856 chr9 141213431 + 109956669 109956970 LTR82B 718 + 0 230 178539 40 99 50 28 85 63 49 chain 5470 chr9 141213431 + 109960607 109960674 MLT1E1A 663 - 169 236 190308 67 chain 22903 chr9 141213431 + 109960685 109961014 THE1C 375 + 0 375 116095 108 0 50 21 0 4 7 34 27 133 1 0 25 chain 31990 chr9 141213431 + 109972116 109972668 L1PB1 5432 + 4902 5425 80880 112 0 2 87 3 2 9 1 0 20 1 0 12 1 0 10 7 3 8 2 0 53 2 1 16 1 0 43 1 0 16 29 15 4 0 1 11 2 0 5 9 8 6 2 0 24 1 0 19 3 6 9 1 0 16 1 0 5 chain 165036 chr9 141213431 + 110018333 110020767 SVA_F 1814 - 1 1804 22649 14 0 1 524 596 0 183 50 0 129 1 15 10 0 1 50 1 0 876 chain 11836 chr9 141213431 + 110018876 110019015 SVA_F 1814 - 582 718 89208 51 2 0 4 1 0 81 chain 18121 chr9 141213431 + 110019015 110019467 SVA_F 1814 - 542 716 65974 70 229 0 86 49 0 18 chain 11155 chr9 141213431 + 110019085 110019216 SVA_F 1814 - 788 1150 89208 15 1 0 10 1 0 36 0 233 68 chain 4487 chr9 141213431 + 110019230 110019280 SVA_F 1814 - 803 852 200944 10 1 0 39 chain 2977 chr9 141213431 + 110019650 110019700 SVA_F 1814 - 914 963 155911 1 2 1 13 4 5 25 1 0 4 chain 136407 chr9 141213431 + 110033455 110035367 SVA_D 2077 + 238 2060 26764 304 0 80 65 0 40 79 40 0 110 3 1 26 320 55 36 9 10 303 1 0 5 0 97 611 chain 20915 chr9 141213431 + 110034110 110034385 SVA_F 1814 + 968 1214 124228 197 1 0 6 35 8 8 1 0 27 chain 2532 chr9 141213431 + 110034314 110034349 SVA_F 1814 + 1045 1080 128983 35 chain 7292 chr9 141213431 + 110036979 110037068 MER73 639 - 547 636 175497 89 chain 14011 chr9 141213431 + 110040573 110040830 Tigger3b 1229 + 302 570 144543 19 12 13 89 30 31 43 0 8 20 1 7 15 5 0 23 chain 22662 chr9 141213431 + 110049862 110050139 AluSq2 311 + 29 308 117263 103 0 2 174 chain 5139 chr9 141213431 + 110065890 110065969 L1MB3 1562 - 190 268 193682 16 6 5 57 chain 27454 chr9 141213431 + 110115707 110116257 L1PREC2 3366 - 324 847 94802 32 6 4 35 156 121 44 1 0 54 2 0 34 0 14 86 1 0 99 chain 23278 chr9 141213431 + 110177651 110177943 AluSp 311 - 5 300 114304 34 11 14 247 chain 3935 chr9 141213431 + 110180081 110180279 L1MB7 1623 + 1303 1488 208332 19 2 1 14 32 104 13 84 0 34 chain 7761 chr9 141213431 + 110237316 110237411 U6 107 - 0 98 172537 60 0 3 35 chain 5888 chr9 141213431 + 110238562 110238628 AluYb8 318 + 10 76 186301 66 chain 29097 chr9 141213431 + 110261697 110262008 AluYa5 310 - 0 310 88567 178 1 0 132 chain 109473 chr9 141213431 + 110281252 110282603 L1PA7 6471 - 16 1363 34324 138 24 15 592 1 0 6 8 5 7 0 4 71 0 3 4 0 1 229 1 0 48 0 1 167 0 1 55 chain 25340 chr9 141213431 + 110294971 110295241 AluYg6 310 + 31 301 103023 270 chain 12178 chr9 141213431 + 110353895 110354190 L1PB1 5432 - 11 298 151503 17 1 0 29 16 32 10 2 1 5 2 0 19 24 12 16 1 0 43 1 0 16 7 9 7 1 0 37 2 0 9 6 2 11 1 0 12 chain 11882 chr9 141213431 + 110432648 110432830 MER2 342 - 51 230 152689 12 23 19 143 0 1 4 chain 47296 chr9 141213431 + 110437670 110438280 MER41B 635 - 0 633 60970 81 0 5 79 5 4 336 1 2 34 0 18 74 chain 30081 chr9 141213431 + 110516312 110516690 THE1C 375 + 0 374 84559 125 3 0 225 1 0 24 chain 165702 chr9 141213431 + 110537675 110540579 SVA_F 1814 + 10 1814 22549 871 1 0 40 758 0 27 0 15 38 1 0 10 1 0 129 354 0 674 chain 3559 chr9 141213431 + 110538602 110538643 SVA_F 1814 + 1128 1169 214346 41 chain 7491 chr9 141213431 + 110538656 110538739 SVA_F 1814 + 1006 1089 122537 83 chain 29704 chr9 141213431 + 110538739 110539115 SVA_F 1814 + 962 1286 85812 251 51 0 61 1 0 12 chain 418 chr9 141213431 + 110539015 110539041 SVA_F 1814 + 1011 1037 155168 26 chain 3946 chr9 141213431 + 110539134 110539174 SVA_F 1814 + 890 930 208186 40 chain 14374 chr9 141213431 + 110539175 110539345 SVA_F 1814 + 930 1112 84017 17 1 15 39 1 0 10 1 0 101 chain 1746 chr9 141213431 + 110539551 110539588 SVA_F 1814 + 964 1001 131366 37 chain 4426 chr9 141213431 + 110539600 110539765 SVA_F 1814 + 1011 1177 115303 116 0 1 49 chain 5994 chr9 141213431 + 110539766 110539893 SVA_F 1814 + 1001 1127 131366 10 1 0 116 chain 28300 chr9 141213431 + 110559593 110559947 THE1A 353 - 0 353 91947 243 1 0 110 chain 6146 chr9 141213431 + 110560181 110560259 L1MA10 1535 - 179 262 184031 25 0 5 53 chain 19142 chr9 141213431 + 110570767 110571052 L1PA8 5853 + 5574 5853 129702 34 2 0 67 5 4 13 10 9 37 6 5 17 1 0 93 chain 20737 chr9 141213431 + 110575171 110575532 THE1B 368 - 0 368 124827 82 5 0 37 32 35 12 0 1 8 2 0 24 1 0 99 24 35 35 chain 15269 chr9 141213431 + 110576067 110576276 MER30 238 - 0 220 140575 48 3 0 62 6 20 90 chain 97533 chr9 141213431 + 110579892 110581274 LTR12C 1709 + 0 1709 37411 464 3 0 5 29 23 50 4 5 103 0 278 184 1 0 5 3 1 90 3 20 10 75 16 142 0 102 91 4 5 28 4 3 84 chain 22868 chr9 141213431 + 110619642 110619907 AluSc5 308 - 43 308 116242 265 chain 2671 chr9 141213431 + 110645650 110645704 MER5A 189 + 81 133 230762 26 14 12 14 chain 19869 chr9 141213431 + 110649749 110650045 THE1B 368 - 65 368 127593 15 0 2 48 1 0 4 7 6 14 0 1 4 4 8 9 0 2 21 1 0 85 1 2 82 chain 32234 chr9 141213431 + 110651552 110651985 LTR71A 459 - 24 459 80466 95 18 19 119 1 2 200 chain 549692 chr9 141213431 + 110788873 110795015 L1PA4 6152 - 0 6152 1486 394 0 6 1811 0 1 424 0 1 332 1 0 526 0 2 679 0 1 264 0 1 474 1 0 1236 chain 4177 chr9 141213431 + 110795714 110795782 MER3 215 + 125 205 204865 23 6 18 39 chain 51703 chr9 141213431 + 110809885 110810512 L1PA7 6471 - 6 614 57814 43 6 5 20 14 0 174 4 0 366 chain 133631 chr9 141213431 + 110829816 110831300 L1PA4 6152 - 1 1489 27293 58 3 7 1423 chain 60199 chr9 141213431 + 110831300 110831972 L1PA4 6152 + 3984 4660 52688 367 0 4 305 chain 30288 chr9 141213431 + 110832887 110833376 MER1A 529 - 4 492 83966 52 16 19 198 8 0 77 26 27 59 11 0 8 8 22 26 chain 7483 chr9 141213431 + 110884278 110884371 LTR32 486 - 37 130 174249 93 chain 40528 chr9 141213431 + 110884371 110884975 MER51A 677 + 0 661 68551 106 1 0 4 0 1 25 1 0 34 33 97 54 7 11 200 4 2 52 16 8 67 chain 132178 chr9 141213431 + 110933936 110935926 L1PB1 5432 - 9 1986 27597 8 1 0 11 13 11 23 1 0 9 40 35 15 8 0 11 2 0 4 1 0 16 1 0 33 13 12 14 3 1 43 27 21 12 1 0 6 1 0 23 3 0 9 0 3 29 0 8 68 3 5 151 1 0 4 4 5 35 7 5 155 14 10 98 0 4 35 2 4 750 2 0 46 1 0 151 5 16 10 1 2 66 chain 270800 chr9 141213431 + 110962714 110966649 L1MA1 4479 + 221 4183 15148 6 1 0 52 2 0 81 6 7 50 0 4 57 28 24 140 7 11 45 4 8 110 0 5 60 11 13 28 1 0 138 1 2 41 0 6 575 0 1 67 1 0 4 0 1 59 0 4 227 0 1 40 12 32 6 0 2 48 4 6 201 9 19 182 36 44 42 1 0 95 11 10 29 1 0 62 1 0 82 1 2 8 1 0 27 3 1 155 18 16 94 1 0 12 3 0 53 2 0 4 0 1 68 3 0 16 1 0 108 1 0 226 2 0 16 1 0 71 1 0 20 2 0 6 2 1 6 1 0 88 9 5 21 0 8 93 4 3 30 2 0 35 20 14 14 5 0 2 4 0 11 chain 23702 chr9 141213431 + 110967837 110968242 MLT2A2 560 - 0 560 112023 53 0 45 4 1 0 45 7 115 6 0 1 34 0 1 29 58 59 118 0 1 4 1 0 45 chain 392234 chr9 141213431 + 110990910 110996954 L1PB1 5432 + 77 5424 10388 98 45 49 23 1 0 259 0 1 63 0 1 35 3 7 351 7 8 187 0 4 227 1 0 5 1 0 7 15 0 185 9 15 323 0 1 465 17 4 20 320 0 28 18 8 41 1 0 424 0 1 112 0 1 3 6 0 70 307 0 476 1 0 4 0 1 17 1 2 11 0 1 4 3 2 73 0 1 33 1 4 218 1 3 498 0 1 71 0 4 105 21 17 33 0 1 129 8 7 108 26 1 77 5 4 94 2 7 4 1 0 20 1 0 15 14 9 11 3 1 50 2 1 16 1 0 44 1 0 20 19 7 19 3 1 4 1 0 14 2 0 24 1 0 17 9 8 9 1 0 16 1 0 4 chain 19592 chr9 141213431 + 111029289 111029538 THE1A-int 1579 + 1308 1563 128406 70 0 1 106 7 12 66 chain 48948 chr9 141213431 + 111090629 111091352 L1MA1 4479 + 2633 3334 59782 35 1 0 103 3 1 32 1 0 62 1 0 41 0 1 50 1 0 27 3 1 172 1 0 17 4 0 72 21 16 53 5 0 18 chain 24088 chr9 141213431 + 111094880 111095170 AluY 311 + 0 297 109808 132 0 1 56 0 6 102 chain 14589 chr9 141213431 + 111127575 111127870 THE1B 368 - 68 368 142631 57 64 68 36 30 31 108 chain 28828 chr9 141213431 + 111147976 111148281 AluYk11 308 + 0 305 89775 305 chain 129321 chr9 141213431 + 111155603 111157158 LTR12C 1709 + 0 1709 28238 277 26 18 278 5 6 120 0 159 253 1 0 6 2 0 107 0 4 223 2 3 255 chain 10880 chr9 141213431 + 111159840 111160004 MSTA 426 - 21 184 156661 14 1 0 20 5 7 5 2 0 117 chain 6928 chr9 141213431 + 111184813 111184948 L1MC1 2226 + 1917 2047 177976 42 38 33 55 chain 13550 chr9 141213431 + 111185015 111185243 MER44A 345 - 32 282 146170 51 5 0 12 0 18 51 1 8 50 21 22 6 0 1 31 chain 37637 chr9 141213431 + 111208623 111209053 L1PA5 6144 - 1533 1966 72521 98 0 1 231 0 2 101 chain 134452 chr9 141213431 + 111209053 111210611 L1PA5 6144 + 4581 6139 27118 47 3 2 645 1 0 219 0 4 251 2 0 42 1 0 196 6 0 10 1 8 134 chain 31770 chr9 141213431 + 111214079 111214431 L1PA2 6032 + 5676 6030 81215 124 0 2 228 chain 59290 chr9 141213431 + 111254693 111255401 L1PA8A 6298 - 17 727 53232 406 0 2 302 chain 286044 chr9 141213431 + 111260066 111263371 L1P1 4361 + 1 3296 14278 642 1 0 198 1 0 593 1 0 975 9 0 745 0 2 140 chain 555020 chr9 141213431 + 111263371 111269395 L1PA2 6032 + 0 6028 824 501 1 0 2800 0 1 1069 0 4 1653 chain 250760 chr9 141213431 + 111269395 111272231 L1PA4 6152 + 3276 6126 16176 4 0 3 280 0 1 26 0 1 348 7 8 400 0 4 952 1 5 818 chain 33075 chr9 141213431 + 111272264 111272634 L1PA4 6152 + 5768 6138 79088 370 chain 107079 chr9 141213431 + 111292243 111293597 LTR12C 1709 + 0 1709 34951 297 0 1 166 0 2 96 31 55 33 0 278 143 0 47 97 9 13 392 6 5 84 chain 2157 chr9 141213431 + 111351118 111351191 MADE2 80 - 6 80 237080 23 8 9 10 2 0 5 12 14 13 chain 71829 chr9 141213431 + 111356892 111357852 LTR5_Hs 974 + 0 974 47548 115 5 13 161 0 1 171 6 7 174 2 0 5 8 9 163 8 15 19 20 18 103 chain 29485 chr9 141213431 + 111378497 111378807 AluYb8 318 + 0 310 86691 310 chain 2817 chr9 141213431 + 111384828 111385052 Tigger13a 716 + 453 689 228503 25 98 104 19 64 70 18 chain 17818 chr9 141213431 + 111391470 111391814 THE1B 368 + 0 353 133339 15 2 0 11 37 44 99 2 0 5 1 2 14 13 19 4 0 1 14 25 23 102 chain 119643 chr9 141213431 + 111391829 111393416 THE1B-int 1605 + 0 1597 31163 402 0 1 27 37 20 25 4 0 180 26 0 14 8 48 110 0 8 398 0 1 53 0 7 303 chain 24418 chr9 141213431 + 111420819 111421183 MSTA 426 + 0 407 107976 51 13 9 50 0 21 66 20 46 164 chain 12156 chr9 141213431 + 111456989 111457181 L1PA8 5853 + 5664 5853 151584 14 19 17 21 0 1 23 2 1 18 2 1 93 chain 64885 chr9 141213431 + 111474967 111475759 L1P3 4156 + 940 1757 50618 63 0 24 180 0 4 183 0 3 99 7 0 211 0 1 49 chain 462040 chr9 141213431 + 111475768 111481851 L1PA7 6471 + 6 6449 8329 195 11 10 21 278 504 5 0 2 30 24 99 152 20 41 118 0 1 145 29 28 4 0 1 394 1 0 411 0 1 332 0 6 21 0 5 176 1 5 389 0 2 210 0 1 7 1 0 68 1 0 4 0 1 89 3 2 11 1 0 26 1 0 46 0 1 42 1 0 201 0 4 12 2 0 42 3 0 331 1 0 4 0 1 819 1 0 307 1 0 17 0 13 110 0 5 136 0 3 311 0 1 270 0 4 104 2 1 141 chain 70197 chr9 141213431 + 111493304 111494348 L1MA2 4263 + 7 1063 48309 12 1 0 85 32 33 26 2 0 93 1 0 77 1 0 68 0 1 65 0 4 13 1 0 54 5 3 63 0 3 42 2 1 20 9 13 103 6 8 130 0 4 22 6 8 105 chain 47232 chr9 141213431 + 111495288 111495838 L1P1 4361 - 20 572 61016 12 2 1 23 1 0 155 1 0 161 1 6 194 chain 115806 chr9 141213431 + 111495865 111497141 L1PA3long 6157 + 4881 6157 32525 1276 chain 4710 chr9 141213431 + 111500010 111500088 L1MA3 4352 + 4258 4332 198390 24 1 0 5 2 1 29 1 0 11 1 0 4 chain 24226 chr9 141213431 + 111502126 111502422 AluSp 311 - 16 311 109055 117 1 0 178 chain 37566 chr9 141213431 + 111529137 111529625 MER1A 529 + 0 490 72726 458 10 13 8 1 0 11 chain 29276 chr9 141213431 + 111566926 111567350 L1PA8 5853 + 5436 5852 87662 85 6 8 35 1 0 10 8 1 12 0 3 18 2 0 71 2 1 60 2 1 19 2 1 91 chain 22105 chr9 141213431 + 111573605 111573878 AluSc 308 - 34 308 119758 67 1 2 205 chain 3284 chr9 141213431 + 111577341 111577376 MADE2 80 + 4 39 219282 35 chain 108707 chr9 141213431 + 111580283 111582326 L1PA15 4387 + 2585 4328 34507 145 0 6 92 434 134 29 1 0 168 2 10 10 11 0 185 7 10 190 13 12 237 0 2 57 15 13 47 1 0 172 1 0 15 9 15 15 11 13 6 2 0 17 1 0 18 24 20 30 19 18 43 3 1 13 chain 62406 chr9 141213431 + 111589987 111590875 L1PB1 5432 + 4184 5083 51722 24 0 2 33 1 2 121 15 14 48 0 1 6 1 0 94 0 6 64 6 10 98 1 0 7 6 5 82 6 5 92 0 1 130 0 1 53 chain 124431 chr9 141213431 + 111610309 111612161 THE1A-int 1579 - 0 1551 29560 1122 5 6 34 302 0 389 chain 25388 chr9 141213431 + 111619256 111619564 AluSg7 307 + 0 306 102749 30 3 0 101 0 1 174 chain 23667 chr9 141213431 + 111665365 111665631 L1PA5 6144 - 6 273 112217 143 0 1 123 chain 2701 chr9 141213431 + 111697490 111697551 MER81 114 - 0 60 230224 13 18 17 30 chain 150110 chr9 141213431 + 111748719 111750356 L1PA3long 6157 - 410 2048 24599 1315 0 1 322 chain 2970 chr9 141213431 + 111804711 111804745 HY3 101 - 45 79 225665 34 chain 46500 chr9 141213431 + 111834351 111834912 LTR14 556 + 0 556 61596 351 1 0 103 0 2 26 6 0 74 chain 36226 chr9 141213431 + 111838393 111838812 L1PA4 6152 + 5722 6143 74591 96 1 0 48 0 3 127 1 0 42 0 1 104 chain 22392 chr9 141213431 + 111850827 111851117 AluY 311 + 0 304 118523 18 1 0 16 0 11 52 0 2 33 0 1 62 3 4 105 chain 10017 chr9 141213431 + 111865719 111865877 L1MA2 4263 + 3965 4114 160499 93 19 11 36 1 0 9 chain 20649 chr9 141213431 + 111876098 111876344 AluSq2 311 + 11 272 125136 143 0 15 103 chain 19137 chr9 141213431 + 111921668 111921960 AluSg 306 + 0 289 129719 38 15 19 152 5 12 61 14 0 7 chain 19229 chr9 141213431 + 111932033 111932290 L1PA8 5853 - 1 253 129436 92 1 0 62 20 18 72 2 0 8 chain 4374 chr9 141213431 + 111939380 111939440 MIRb 242 - 123 181 202267 52 2 0 6 chain 7011 chr9 141213431 + 111958481 111958578 U6 107 - 1 96 177384 47 2 0 48 chain 28482 chr9 141213431 + 112030896 112031196 AluYg6 310 + 0 300 91257 300 chain 25677 chr9 141213431 + 112094434 112094726 AluYc3 301 - 9 301 101381 55 1 0 122 1 2 113 chain 12959 chr9 141213431 + 112152751 112152890 L1PA3long 6157 + 6018 6157 148400 139 chain 3882 chr9 141213431 + 112171014 112171067 L1PA6 6164 + 6106 6162 209135 39 0 5 6 2 0 6 chain 3032 chr9 141213431 + 112183463 112183501 MIR3 191 + 74 112 224347 38 chain 3212 chr9 141213431 + 112191505 112191551 MIRb 242 - 98 144 220703 15 1 0 4 0 1 26 chain 2661 chr9 141213431 + 112222414 112222478 L2a 937 + 176 238 230890 27 21 19 16 chain 25272 chr9 141213431 + 112248976 112249349 THE1C 375 + 0 375 103361 35 5 7 83 13 14 169 7 7 35 1 0 25 chain 28391 chr9 141213431 + 112295406 112295717 AluYb8 318 - 1 310 91613 254 2 0 55 chain 118942 chr9 141213431 + 112334619 112336333 L1PA15 4387 + 2696 4366 31438 216 10 0 12 18 17 91 0 4 131 2 1 220 9 0 8 0 10 29 0 1 101 0 2 162 10 0 8 1 3 100 2 0 16 3 0 62 2 0 43 1 0 60 1 0 111 2 1 25 1 0 55 1 0 22 8 0 10 1 0 50 7 4 40 6 4 10 9 4 27 1 0 10 chain 20740 chr9 141213431 + 112386747 112387109 THE1B 368 - 0 368 124817 56 7 6 7 0 1 40 1 0 16 1 0 12 1 0 16 17 24 21 1 0 52 1 0 47 17 23 34 2 0 13 chain 87016 chr9 141213431 + 112393501 112394556 MER11C 1089 + 0 1073 40775 251 0 1 65 0 4 367 0 4 45 0 1 83 16 24 81 2 0 5 0 2 140 chain 38411 chr9 141213431 + 112406839 112407298 THE1B-int 1605 - 1062 1546 71561 92 0 25 367 chain 7144 chr9 141213431 + 112420846 112420973 THE1B 368 - 20 154 176451 36 7 6 56 14 22 14 chain 422692 chr9 141213431 + 112422567 112428177 L1PA8 5853 - 77 5803 9468 14 0 2 5 5 19 33 2 3 6 2 0 15 1 0 71 2 0 43 2 1 210 0 30 313 0 2 712 9 7 884 13 12 277 0 1 125 1 0 25 21 0 57 9 10 102 0 2 184 1 0 6 0 1 578 1 0 264 0 3 5 3 0 544 5 6 71 23 28 357 0 1 4 5 4 282 8 29 120 3 7 17 34 109 51 63 52 22 chain 29259 chr9 141213431 + 112430208 112430515 AluYa5 310 - 3 310 87741 307 chain 184640 chr9 141213431 + 112433768 112436318 L1PA13 3608 - 123 2668 20532 19 1 0 18 2 0 4 2 0 44 1 9 35 2 0 17 8 7 59 2 0 109 8 4 27 2 1 133 12 6 126 3 4 215 0 1 238 4 1 160 0 1 174 6 8 32 1 0 4 4 5 18 1 2 11 0 3 35 0 5 52 13 0 167 0 1 73 0 3 142 0 4 42 1 4 186 1 0 336 chain 39461 chr9 141213431 + 112448967 112449407 L1PA4 6152 - 9 449 70069 440 chain 140932 chr9 141213431 + 112463447 112465040 L1PA4 6152 + 4563 6152 25995 741 0 4 391 1 0 296 1 0 105 6 0 52 chain 15007 chr9 141213431 + 112475950 112476255 L1MC2 1988 + 1595 1918 141299 75 19 22 70 11 10 38 60 76 32 chain 42541 chr9 141213431 + 112523651 112524179 L1PA8 5853 - 0 523 65971 92 2 1 19 2 1 61 1 0 63 0 1 7 2 0 46 1 0 232 chain 22201 chr9 141213431 + 112524179 112524429 L1PA8 5853 + 5056 5306 119343 250 chain 22338 chr9 141213431 + 112547738 112548083 THE1B 368 - 0 368 118748 56 7 6 63 36 46 28 1 0 114 0 15 40 chain 6507 chr9 141213431 + 112564606 112564688 MER45A 178 + 91 173 181188 82 chain 114576 chr9 141213431 + 112570384 112571979 THE1C-int 1605 + 0 1598 32929 115 1 55 117 0 17 100 6 5 31 90 16 115 2 1 92 1 0 86 0 9 546 7 8 180 1 0 105 chain 7884 chr9 141213431 + 112583513 112583600 L1PA5 6144 + 6035 6122 171778 87 chain 15321 chr9 141213431 + 112584962 112585230 L1PA15 4387 - 36 294 140423 22 5 0 16 3 1 28 12 17 50 2 1 10 4 0 21 1 0 55 2 1 25 1 0 11 chain 108245 chr9 141213431 + 112587425 112588649 L1PA5 6144 + 4917 6138 34632 134 3 1 932 1 0 154 chain 538445 chr9 141213431 + 112597680 112603806 L1PA5 6144 + 0 6144 3079 1728 0 1 838 0 1 107 0 1 607 1 2 137 12 4 808 0 14 94 0 8 411 1 0 266 1 0 511 0 1 198 0 1 243 1 6 8 5 0 149 chain 25579 chr9 141213431 + 112605147 112605440 AluSp 311 + 9 302 101828 293 chain 22693 chr9 141213431 + 112609751 112610035 AluY 311 + 12 297 117104 120 9 10 155 chain 21324 chr9 141213431 + 112614978 112615321 L1PA17 2846 - 153 488 122783 43 1 0 18 2 1 24 8 7 8 2 0 27 0 3 28 1 0 24 1 0 5 11 7 6 0 1 93 1 0 40 chain 26888 chr9 141213431 + 112657983 112658653 THE1C 375 - 0 375 96676 6 2 0 19 1 0 161 1 0 12 307 13 18 0 4 57 1 0 85 chain 26304 chr9 141213431 + 112691872 112692167 AluY 311 + 10 306 98814 122 0 1 173 chain 22101 chr9 141213431 + 112708698 112708992 AluSp 311 + 13 307 119774 98 2 1 8 5 0 115 1 8 22 1 0 42 chain 19065 chr9 141213431 + 112716747 112716951 L1PA2 6032 + 5828 6032 129921 204 chain 5930 chr9 141213431 + 112755267 112755336 LTR23 429 - 49 118 185886 69 chain 538137 chr9 141213431 + 112762297 112768453 L1PA4 6152 - 0 6151 3127 6 0 5 156 1 0 2046 0 1 182 21 4 967 0 2 240 0 1 1059 0 1 377 0 3 1101 chain 3562 chr9 141213431 + 112776232 112776374 MER58A 224 + 46 190 214294 31 89 91 22 chain 7892 chr9 141213431 + 112782559 112783049 THE1D 372 + 217 370 171716 14 22 13 31 21 6 28 320 7 54 chain 65342 chr9 141213431 + 112784860 112785581 L1PA4 6152 - 1 722 50403 721 chain 21901 chr9 141213431 + 112794691 112794974 AluSx4 309 + 1 284 120618 200 17 17 66 chain 24491 chr9 141213431 + 112799490 112799784 AluSp 311 - 22 310 107588 72 6 0 216 chain 22743 chr9 141213431 + 112841512 112841791 AluSx 319 + 19 298 116855 279 chain 2370 chr9 141213431 + 112850570 112850664 MER51A 677 - 445 478 234520 18 61 0 15 chain 108746 chr9 141213431 + 112859254 112860461 SVA_D 2077 - 21 2074 34494 495 0 818 688 0 24 9 1 0 4 0 5 10 chain 33119 chr9 141213431 + 112936664 112937030 L1PA3long 6157 - 1 369 79029 5 0 2 361 chain 29441 chr9 141213431 + 112938884 112939193 AluYa5 310 - 1 310 86893 309 chain 3892 chr9 141213431 + 112956773 112956822 MER4C 627 - 512 559 208992 34 2 0 13 chain 6539 chr9 141213431 + 112960802 112960875 tRNA-Arg-CGA_ 73 + 0 73 180935 73 chain 25604 chr9 141213431 + 112960895 112961198 AluSp 311 + 4 307 101708 303 chain 7183 chr9 141213431 + 112986303 112986401 MER74A 558 - 1 103 176191 22 1 4 71 0 1 4 chain 24188 chr9 141213431 + 112986408 112986772 THE1B 368 + 0 368 109285 169 1 0 29 0 2 14 28 30 63 11 12 49 chain 21799 chr9 141213431 + 112987222 112987612 THE1D 372 + 0 372 121024 44 29 0 17 4 14 23 16 12 56 32 33 33 0 4 136 chain 541601 chr9 141213431 + 112991709 112998185 L1PA4 6152 - 9 6144 2576 835 0 4 1365 0 1 781 1 0 4 0 1 233 368 14 517 0 4 70 0 1 894 1 4 1407 chain 26671 chr9 141213431 + 113029447 113029750 AluYk4 311 - 8 311 97422 303 chain 41524 chr9 141213431 + 113047076 113047540 L1PA4 6152 + 5687 6151 67252 464 chain 34738 chr9 141213431 + 113069851 113070289 MER4A1 472 + 10 472 76561 53 0 1 183 0 21 24 0 2 178 chain 13735 chr9 141213431 + 113073228 113073449 LTR8 732 - 467 701 145485 20 28 47 159 6 0 8 chain 99467 chr9 141213431 + 113074306 113076265 MER4-int 2692 + 1356 2692 36910 63 0 1 57 4 9 131 1 2 75 0 4 196 1 8 27 4 0 90 0 1 107 1 4 110 317 0 19 0 1 13 3 4 9 1 0 126 15 21 7 331 0 251 chain 31044 chr9 141213431 + 113076273 113076683 MER4A1 472 + 0 433 82447 174 0 1 72 7 28 82 0 1 75 chain 91262 chr9 141213431 + 113101462 113102483 L1PA4 6152 - 0 1031 39212 10 0 6 828 0 4 183 chain 10383 chr9 141213431 + 113107417 113107645 Tigger2 2703 + 0 231 158774 113 32 38 7 7 0 15 23 27 31 chain 157198 chr9 141213431 + 113121104 113122872 L1PA4 6152 - 9 1784 23701 1478 0 1 23 1 6 151 0 1 115 chain 18849 chr9 141213431 + 113140973 113141188 L1PA4 6152 + 5923 6138 130518 215 chain 212254 chr9 141213431 + 113142762 113145820 L1PA10 4194 - 887 4013 18343 176 1 0 4 0 3 172 0 1 92 28 0 81 3 0 44 2 5 17 12 22 15 0 4 295 0 11 13 0 1 66 0 4 28 2 0 234 0 4 179 0 4 63 1 2 7 2 0 12 0 107 170 6 5 172 0 14 232 1 0 63 6 9 84 0 1 23 0 4 78 0 3 293 7 4 10 3 1 19 7 8 42 1 0 11 8 0 13 11 0 7 0 3 9 1 0 7 1 0 21 2 0 22 1 0 7 36 11 9 1 0 15 2 0 21 1 0 9 1 0 9 2 0 9 15 11 5 2 0 6 3 0 11 5 0 9 chain 541193 chr9 141213431 + 113155678 113161778 L1PA4 6152 + 13 6151 2636 129 0 14 424 1 0 11 0 1 311 0 4 27 0 1 1768 0 5 544 0 4 88 0 2 1002 0 2 319 7 8 301 1 0 115 0 1 287 2 0 615 1 8 147 chain 104606 chr9 141213431 + 113174667 113175833 L1PA3long 6157 + 4989 6157 35595 317 2 6 840 2 0 5 chain 567709 chr9 141213431 + 113179382 113185406 L1HS 6032 + 0 6025 46 1752 0 1 4272 chain 23762 chr9 141213431 + 113216399 113216704 L1P4 1494 - 104 413 111690 41 1 0 206 0 5 57 chain 27907 chr9 141213431 + 113228756 113229061 AluYa5 310 + 0 302 93339 123 2 0 3 1 0 176 chain 10182 chr9 141213431 + 113229706 113229828 MSTA 426 + 1 123 159706 122 chain 11861 chr9 141213431 + 113233073 113233209 L1PA5 6144 - 13 149 152782 136 chain 42448 chr9 141213431 + 113258457 113258996 MLT2A2 560 + 0 560 66080 86 0 3 15 0 3 292 3 14 137 0 4 6 chain 36958 chr9 141213431 + 113268099 113268540 L1PA7 6471 - 1 441 73570 21 1 0 419 chain 24353 chr9 141213431 + 113293600 113293936 THE1C 375 + 3 342 108358 170 14 14 26 7 10 119 chain 70027 chr9 141213431 + 113297495 113298588 L1PREC2 3366 - 370 1490 48382 25 37 20 23 9 7 15 6 1 17 29 21 13 3 0 4 1 0 45 1 0 53 2 0 15 5 11 94 0 3 167 17 61 256 9 22 247 chain 13570 chr9 141213431 + 113305102 113305254 L1PA5 6144 + 5991 6143 146093 152 chain 291730 chr9 141213431 + 113345889 113349947 L1PB1 5432 - 10 4078 13920 13 0 14 4 1 0 21 1 0 24 2 0 15 1 0 4 2 0 17 18 8 6 3 0 16 1 0 40 4 3 16 2 1 8 1 0 45 2 0 8 6 2 11 1 0 8 1 0 20 8 15 11 0 1 92 0 13 171 0 8 61 0 1 37 2 1 68 0 1 7 0 2 35 0 7 68 30 34 29 31 11 328 3 4 47 0 1 109 1 0 64 0 1 57 6 0 16 1 4 76 0 2 11 10 0 461 2 1 57 0 5 194 0 1 78 14 13 73 2 0 6 0 2 247 1 3 46 8 10 34 6 0 116 3 7 51 5 6 237 20 29 187 7 8 111 1 2 35 0 1 301 5 0 49 chain 78944 chr9 141213431 + 113351548 113352593 MER11C 1089 + 0 1063 44086 246 0 9 62 0 4 65 1 0 146 7 35 7 14 0 4 15 0 13 6 4 81 1 0 12 0 4 7 1 0 18 0 3 17 0 1 123 0 1 38 0 1 72 0 1 89 chain 74764 chr9 141213431 + 113356320 113357491 L1PA11 4918 - 289 1420 46130 18 65 49 8 1 0 14 14 10 10 44 34 12 1 0 53 1 2 12 2 0 12 1 0 63 8 1 56 0 1 163 0 1 61 0 1 253 1 0 126 0 2 7 10 7 155 chain 6205 chr9 141213431 + 113364179 113364247 L1PA5 6144 - 213 281 183547 68 chain 42388 chr9 141213431 + 113376779 113377309 LTR10F 562 - 0 562 66165 161 22 23 123 0 31 224 chain 24065 chr9 141213431 + 113387588 113387861 L1PA4 6152 + 5524 5800 109956 122 0 3 151 chain 29457 chr9 141213431 + 113387864 113388205 L1PA4 6152 + 5800 6140 86813 334 1 0 6 chain 173937 chr9 141213431 + 113407189 113409190 L1PA5 6144 + 4132 6139 21599 84 8 1 86 2 1 324 1 0 669 0 4 109 0 1 159 0 17 410 7 0 142 chain 22924 chr9 141213431 + 113415127 113415397 L1PA7 6471 - 5 276 115988 168 0 1 102 chain 67406 chr9 141213431 + 113421221 113421986 L1PA5 6144 + 5374 6140 49483 436 0 1 329 chain 119683 chr9 141213431 + 113427165 113428552 L1PA7 6471 - 5 1393 31151 212 0 1 336 0 1 295 1 0 543 chain 108716 chr9 141213431 + 113428554 113429868 L1PA7 6471 + 3751 5051 34504 85 19 2 170 1 0 294 15 17 327 0 1 198 0 1 205 chain 98490 chr9 141213431 + 113446115 113447647 L1MA1 4479 - 317 1825 37163 11 1 0 9 5 4 31 2 0 29 1 0 47 1 0 49 8 9 21 3 0 5 1 0 88 1 0 19 2 0 14 1 0 71 1 0 12 12 5 20 5 4 141 0 9 44 3 0 131 4 0 126 4 0 12 1 0 94 1 0 41 16 22 22 1 0 59 1 0 30 2 0 7 1 3 15 1 0 27 3 0 39 14 20 34 1 0 35 16 15 6 0 1 10 2 0 103 1 0 14 chain 29911 chr9 141213431 + 113473195 113473545 L1PA5 6144 + 5800 6142 85064 206 4 0 129 4 0 7 chain 285035 chr9 141213431 + 113481467 113485842 L1PB1 5432 + 1413 5374 14351 123 1 0 251 1 0 480 14 4 72 0 18 39 51 42 49 3 2 346 4 3 143 1 2 228 0 2 686 1 2 524 1 2 33 309 0 87 14 15 43 0 5 7 0 1 47 0 1 31 6 8 87 1 10 24 1 0 273 103 11 20 1 0 10 1 0 14 5 1 9 2 0 52 18 16 15 1 0 23 10 9 13 2 0 6 17 6 16 20 17 5 2 0 24 1 0 4 chain 4857 chr9 141213431 + 113487386 113487449 L1PB1 5432 + 5159 5220 196702 9 2 0 52 chain 4889 chr9 141213431 + 113487467 113487572 L1PB1 5432 + 5236 5326 196381 15 1 0 31 2 1 13 2 0 6 17 6 18 chain 48088 chr9 141213431 + 113520744 113521622 L1PREC2 3366 + 2115 3042 60412 285 8 9 18 6 13 42 0 1 4 0 1 71 7 88 67 2 0 34 9 7 46 7 6 43 1 0 4 3 0 13 70 55 29 2 0 9 66 50 32 chain 27411 chr9 141213431 + 113523847 113524153 AluYf5 307 - 1 307 94931 103 1 0 36 0 1 166 chain 567917 chr9 141213431 + 113553377 113559409 L1HS 6032 + 0 6032 31 6032 chain 16810 chr9 141213431 + 113571882 113572295 L1PA16 3655 - 36 449 136089 16 5 0 7 45 18 60 37 70 36 0 3 116 62 58 29 chain 26553 chr9 141213431 + 113576073 113576439 THE1C 375 - 0 375 97829 25 1 0 141 3 6 16 1 2 9 5 11 165 chain 78404 chr9 141213431 + 113588530 113589498 LTR5_Hs 974 + 0 974 44318 17 0 4 437 1 5 313 7 7 106 1 0 22 1 0 63 chain 25068 chr9 141213431 + 113589531 113589889 THE1B 368 - 12 368 104467 162 4 0 19 4 6 50 2 0 6 1 4 61 0 1 31 3 1 15 chain 15557 chr9 141213431 + 113592188 113592377 LTR1 825 + 420 611 139710 52 0 1 51 0 1 86 chain 24481 chr9 141213431 + 113601295 113601613 AluY 311 + 0 310 107649 11 6 0 122 2 0 80 2 1 61 0 1 34 chain 3003 chr9 141213431 + 113620623 113620657 MER51D 577 + 424 458 224979 34 chain 24086 chr9 141213431 + 113622929 113623283 THE1C-int 1605 + 0 424 109828 16 1 2 39 1 2 28 0 66 17 3 0 152 5 11 57 4 3 31 chain 24619 chr9 141213431 + 113664543 113664905 THE1C 375 + 0 375 106893 61 7 12 65 13 17 29 1 2 72 1 0 91 1 0 13 0 5 8 chain 5553 chr9 141213431 + 113671671 113671747 LOR1a 498 + 425 498 189536 5 3 0 68 chain 22024 chr9 141213431 + 113676504 113676861 THE1B 368 - 8 368 120122 48 7 6 66 5 13 13 49 45 169 chain 15905 chr9 141213431 + 113685137 113685324 L1PA7 6471 - 17 204 138639 187 chain 19134 chr9 141213431 + 113685566 113685862 MER47A 366 + 0 296 129727 52 27 25 68 2 3 118 3 4 26 chain 27841 chr9 141213431 + 113718338 113718669 L1PA7 6471 + 6131 6461 93556 183 1 0 147 chain 19663 chr9 141213431 + 113723931 113724231 THE1B 368 - 62 368 128214 63 2 1 12 1 0 16 0 4 10 1 0 4 6 10 17 1 0 104 5 7 58 chain 10891 chr9 141213431 + 113725826 113725948 L1PA4 6152 + 6029 6151 156618 122 chain 76281 chr9 141213431 + 113727608 113728884 L1PA8 5853 + 4897 5853 45321 108 1 4 362 1 0 41 2 0 149 2 1 42 10 8 67 1 0 9 1 0 72 315 0 93 chain 7412 chr9 141213431 + 113739959 113740049 L1PA8 5853 + 5762 5853 174693 50 0 1 40 chain 71617 chr9 141213431 + 113744032 113744914 L1PA7 6471 + 5580 6468 47645 12 1 6 23 0 3 209 1 0 238 1 0 397 chain 8300 chr9 141213431 + 113754173 113754295 LTR64 526 + 406 521 169397 39 4 0 69 3 0 7 chain 17497 chr9 141213431 + 113755409 113755619 L1PA6 6164 - 2 211 134275 169 1 0 40 chain 223122 chr9 141213431 + 113786857 113789486 L1PA7 6471 - 17 2680 17703 21 0 9 284 0 1 390 0 1 119 5 8 22 1 0 507 1 20 230 0 1 269 0 1 780 chain 6511 chr9 141213431 + 113810472 113810545 L1PA7 6471 + 6386 6459 181152 73 chain 117578 chr9 141213431 + 113841940 113843256 L1PA4 6152 - 180 1500 31932 664 0 4 652 chain 102667 chr9 141213431 + 113843256 113844388 L1PA4 6152 + 3527 4659 36009 1132 chain 69113 chr9 141213431 + 113853526 113854361 HERVL-int 5654 + 0 841 48756 173 1 3 277 0 2 14 0 1 44 0 1 326 chain 26715 chr9 141213431 + 113854385 113854740 THE1A 353 - 0 353 97271 155 1 0 72 19 18 108 chain 6912 chr9 141213431 + 113859609 113859693 HY4 93 - 3 93 178094 73 0 6 11 chain 5699 chr9 141213431 + 113879615 113879711 MER2 342 + 211 320 188117 7 0 12 60 12 13 17 chain 22857 chr9 141213431 + 113881737 113882099 THE1B 368 - 0 366 116298 25 14 15 20 1 0 65 2 1 12 1 0 16 0 1 4 1 0 4 0 5 6 12 14 11 1 0 167 chain 92154 chr9 141213431 + 113887696 113888731 L1PA5 6144 - 2 1059 38919 557 0 17 421 0 5 57 chain 34760 chr9 141213431 + 113891896 113892327 L1PA7 6471 - 7 447 76524 6 3 0 105 2 0 30 1 15 284 chain 4643 chr9 141213431 + 113898301 113898356 L1MB7 1623 + 239 294 199143 55 chain 3518 chr9 141213431 + 113900956 113901015 MER2 342 + 111 169 215095 29 9 8 21 chain 11214 chr9 141213431 + 113901029 113901152 L1PA4 6152 - 11 134 155370 123 chain 59334 chr9 141213431 + 113930032 113930728 L1PA7 6471 + 5774 6467 53200 688 3 0 5 chain 208042 chr9 141213431 + 113945100 113947811 L1PB1 5432 - 136 2837 18634 15 1 0 44 26 25 45 2 0 9 16 11 13 6 5 13 7 0 17 15 0 284 13 0 8 1 4 89 0 1 91 0 1 104 0 5 172 0 5 124 1 0 4 0 2 37 0 4 429 0 6 239 0 4 173 0 1 220 0 1 83 1 0 54 17 19 41 0 3 49 1 0 247 chain 23330 chr9 141213431 + 113947814 113948109 L1PBa1 4058 - 2855 3150 114033 95 1 0 110 0 1 89 chain 51073 chr9 141213431 + 113951491 113952322 L1MA3 4352 + 3485 4307 58268 103 22 23 5 1 0 111 0 1 166 55 56 143 36 11 8 0 7 51 3 10 37 1 5 38 2 0 22 1 0 6 1 0 19 chain 315744 chr9 141213431 + 113961167 113964956 L1PA3long 6157 + 1715 6149 12775 118 1 0 280 0 3 56 1 0 40 28 2 10 0 26 299 0 2 86 13 14 96 10 649 2585 1 3 165 chain 182337 chr9 141213431 + 113964996 113968061 L1PA11 4918 + 1772 4564 20757 35 0 1 4 1 2 51 1 0 305 15 18 26 1 0 20 1 2 24 0 4 88 7 11 90 2 0 24 23 24 38 20 12 519 7 14 151 0 1 54 0 3 52 0 1 86 2 0 99 9 0 354 27 74 55 309 0 44 0 1 66 128 129 59 0 4 7 0 1 4 11 7 51 7 8 12 2 0 63 7 5 13 1 0 20 4 0 9 8 3 10 17 13 11 1 0 10 chain 49488 chr9 141213431 + 113985452 113986007 L1PA4 6152 - 785 1345 59257 65 0 4 422 0 1 68 chain 70825 chr9 141213431 + 113986007 113986797 L1PA4 6152 + 5362 6152 48003 790 chain 46176 chr9 141213431 + 113988036 113988543 L1PA5 6144 + 5635 6142 61871 507 chain 14072 chr9 141213431 + 114001633 114001806 L1PA6 6164 - 4 176 144314 6 2 0 45 0 1 120 chain 116064 chr9 141213431 + 114027593 114029148 THE1B-int 1605 - 5 1605 32428 252 11 15 99 3 5 362 0 1 159 2 1 131 6 11 59 25 26 8 2 0 14 0 25 101 8 15 177 0 3 136 chain 18760 chr9 141213431 + 114029160 114029511 THE1B 368 - 12 368 130803 44 7 6 66 52 57 5 0 2 41 26 27 95 2 0 13 chain 26461 chr9 141213431 + 114061990 114062342 L1PA8 5853 + 5506 5853 98201 18 0 2 38 1 0 44 2 0 74 10 8 50 2 1 19 1 0 93 chain 8161 chr9 141213431 + 114064619 114064747 MLT1B 390 - 0 129 170168 81 18 19 29 chain 45296 chr9 141213431 + 114066299 114066807 L1PA5 6144 + 5635 6143 62723 508 chain 23653 chr9 141213431 + 114071976 114072257 AluSp 311 + 8 289 112291 281 chain 23729 chr9 141213431 + 114077890 114078191 AluY 311 + 2 305 111883 28 1 6 97 6 0 14 3 6 152 chain 192625 chr9 141213431 + 114080015 114082119 L1PA3long 6157 - 0 2107 19803 5 0 2 331 0 1 1768 chain 87063 chr9 141213431 + 114085059 114086014 L1PA3long 6157 - 0 955 40753 146 1 0 192 0 1 616 chain 4972 chr9 141213431 + 114086014 114086069 L1PA3long 6157 + 5150 5205 194520 55 chain 11524 chr9 141213431 + 114088316 114088449 L1PA7 6471 - 5 138 154198 133 chain 43882 chr9 141213431 + 114094230 114095010 L1PB1 5432 + 4661 5404 64353 133 0 8 212 0 2 87 31 11 24 38 30 52 2 1 9 15 6 44 1 0 14 21 0 8 34 49 19 2 1 20 2 1 12 chain 538836 chr9 141213431 + 114096282 114104834 L1PA7 6471 + 1 6470 3019 146 0 1 263 0 1 48 1 0 122 0 5 22 0 1 107 10 12 182 1 2 538 10 11 99 2 1 63 0 1 4 5 4 264 0 2 513 1794 0 228 1 0 928 1 9 430 0 1 994 4 0 333 307 0 285 0 3 112 6 0 96 0 1 208 1 0 93 1 3 176 0 1 4 1 2 4 0 1 145 chain 28815 chr9 141213431 + 114100135 114100459 LTR17 781 + 0 324 89825 324 chain 35666 chr9 141213431 + 114207965 114208403 L1PA6 6164 - 5 443 75311 50 0 1 92 6 0 8 1 6 281 chain 25233 chr9 141213431 + 114248303 114248591 AluSp 311 - 13 301 103573 288 chain 7060 chr9 141213431 + 114254569 114254657 MER21A 919 - 796 897 177037 58 0 13 30 chain 10239 chr9 141213431 + 114262396 114262528 MLT1A0 366 - 21 154 159427 88 2 3 42 chain 25276 chr9 141213431 + 114267597 114267900 AluSp 311 + 6 306 103336 283 3 0 17 chain 79577 chr9 141213431 + 114273369 114274436 MER11A 1151 + 0 1151 43794 78 1 9 109 5 4 30 1 0 64 0 11 331 1 2 44 20 24 37 0 4 69 0 2 16 1 59 101 5 4 87 1 0 66 chain 20960 chr9 141213431 + 114274436 114274718 AluSx1 309 + 30 301 124068 98 10 0 61 1 0 112 chain 23247 chr9 141213431 + 114280583 114280868 AluSp 311 + 11 295 114454 42 5 4 238 chain 8974 chr9 141213431 + 114327535 114327666 MLT1B 390 + 230 362 165750 12 7 5 20 0 1 60 0 2 32 chain 80938 chr9 141213431 + 114330082 114331109 MER11A 1151 + 0 1151 43223 55 0 99 22 8 0 24 1 0 94 4 0 36 1 3 240 0 1 101 1 0 9 5 6 89 0 1 39 6 40 292 chain 75497 chr9 141213431 + 114354063 114354937 MER11D 897 + 0 897 45769 287 1 0 310 0 24 276 chain 7848 chr9 141213431 + 114366420 114366517 MER11A 1151 - 0 96 172024 66 1 0 30 chain 13743 chr9 141213431 + 114366521 114366688 LTR3A 482 - 313 482 145458 53 0 1 5 0 1 109 chain 120024 chr9 141213431 + 114379146 114380572 SVA_C 1631 - 19 1631 31049 589 3 48 20 1 0 25 0 88 86 0 37 41 0 37 375 23 0 191 0 25 28 20 0 5 2 0 17 chain 29791 chr9 141213431 + 114385292 114385680 THE1C 375 - 0 375 85496 188 0 2 8 1 0 101 14 0 76 chain 2924 chr9 141213431 + 114392783 114392826 MER53 195 + 91 136 226607 15 2 4 26 chain 163852 chr9 141213431 + 114402247 114404883 SVA_F 1814 + 13 1788 22828 923 0 1 10 873 15 39 1 0 4 1 0 172 1 0 10 1 0 601 chain 17087 chr9 141213431 + 114403214 114403477 SVA_F 1814 + 914 1142 101440 34 3 18 80 94 44 52 chain 1248 chr9 141213431 + 114403331 114403381 SVA_F 1814 + 374 466 143550 17 4 7 7 0 39 22 chain 2973 chr9 141213431 + 114403381 114403423 SVA_F 1814 + 855 898 181138 25 0 1 17 chain 4835 chr9 141213431 + 114403477 114403598 SVA_F 1814 + 966 1087 87806 121 chain 19913 chr9 141213431 + 114403598 114403974 SVA_F 1814 + 896 1138 81805 51 0 15 166 149 0 10 chain 2047 chr9 141213431 + 114403822 114403904 SVA_F 1814 + 847 929 143550 8 1 0 30 0 1 43 chain 3855 chr9 141213431 + 114403922 114403961 SVA_F 1814 + 1089 1128 209531 39 chain 6382 chr9 141213431 + 114403988 114404053 SVA_F 1814 + 1024 1089 159563 65 chain 24437 chr9 141213431 + 114441795 114442104 AluSc5 308 - 5 308 107874 6 5 0 166 2 0 12 0 1 118 chain 38770 chr9 141213431 + 114457774 114458275 MER75 514 - 0 514 71055 25 3 15 286 0 1 187 chain 125554 chr9 141213431 + 114459473 114460910 L1PA5 6144 - 0 1437 29227 671 0 1 298 1 0 467 chain 7167 chr9 141213431 + 114490828 114490929 L1MB8 1703 + 1471 1577 176282 9 0 3 17 1 3 74 chain 59505 chr9 141213431 + 114497470 114498186 L1PA7 6471 - 5 719 53105 66 2 0 5 1 3 245 2 1 42 1 0 352 chain 7176 chr9 141213431 + 114498186 114498289 L1PA16 3655 - 274 376 176235 27 4 5 59 2 0 11 chain 65806 chr9 141213431 + 114512915 114513739 L1PA11 4918 - 529 1642 50190 47 1 4 7 5 0 366 15 14 96 0 2 172 4 294 111 chain 85864 chr9 141213431 + 114529191 114532160 L1MA4 2864 - 712 2830 41210 34 1 0 42 0 6 45 0 1 10 0 2 111 1 2 288 9 14 120 0 1 4 1 0 121 6 5 115 200 6 206 1540 819 12 0 52 77 4 3 22 chain 6286 chr9 141213431 + 114530189 114530263 L1MA4 2864 - 1544 1618 182913 74 chain 22544 chr9 141213431 + 114548458 114548736 AluY 311 + 25 297 117826 61 0 1 202 7 0 8 chain 5574 chr9 141213431 + 114552502 114552591 MADE1 96 + 1 96 189331 46 3 11 10 2 0 28 chain 35015 chr9 141213431 + 114570696 114571157 MER4A1 472 + 0 462 76173 30 0 1 320 18 15 5 0 3 88 chain 42334 chr9 141213431 + 114577859 114578452 LTR26E 604 - 0 594 66228 24 0 1 39 6 2 45 15 18 31 3 0 30 0 3 202 7 8 191 chain 29113 chr9 141213431 + 114631761 114632066 AluYb8 318 - 13 318 88493 305 chain 6804 chr9 141213431 + 114636176 114636283 MSTA 426 - 6 109 178919 33 3 4 16 6 1 49 chain 80707 chr9 141213431 + 114637582 114638549 LTR5_Hs 974 + 0 974 43304 13 0 4 442 0 4 448 1 0 63 chain 26037 chr9 141213431 + 114651621 114651914 AluYc 301 + 1 296 99872 119 0 2 174 chain 24421 chr9 141213431 + 114657632 114657946 AluSg7 307 - 5 307 107967 13 11 0 80 6 5 204 chain 9536 chr9 141213431 + 114676558 114676717 MER30 238 - 10 192 162905 18 14 11 41 0 6 14 2 0 6 4 26 60 chain 26979 chr9 141213431 + 114680931 114681231 AluYd8 298 + 0 296 96350 114 4 0 182 chain 3740 chr9 141213431 + 114702560 114702606 L1MB7 1623 + 1384 1429 211323 38 1 0 7 chain 23292 chr9 141213431 + 114710415 114710703 AluSp 311 + 1 293 114240 38 0 4 178 1 2 50 1 0 20 chain 3148 chr9 141213431 + 114714030 114714064 MER33 330 - 77 111 221962 34 chain 8601 chr9 141213431 + 114756192 114756291 Tigger1 2417 - 1143 1242 167728 99 chain 25857 chr9 141213431 + 114782124 114782432 AluY 311 + 8 311 100615 110 5 0 193 chain 25651 chr9 141213431 + 114787495 114787900 MSTB 430 + 31 430 101490 31 0 1 59 0 1 73 0 5 6 5 1 13 26 18 92 29 28 71 chain 20767 chr9 141213431 + 114788504 114788803 L1PA8 5853 - 3 295 124723 90 1 0 15 10 9 41 3 2 14 2 1 70 2 0 46 1 0 4 chain 4832 chr9 141213431 + 114829689 114829746 MLT1K 546 + 486 543 196999 57 chain 3149 chr9 141213431 + 114900087 114900123 U6 107 + 11 47 221931 36 chain 28666 chr9 141213431 + 114902360 114902671 AluYb9 318 + 0 308 90465 303 3 0 5 chain 23660 chr9 141213431 + 114914035 114914333 AluSp 311 + 0 298 112247 91 0 3 48 3 0 5 1 4 142 3 0 5 chain 10501 chr9 141213431 + 114914502 114914658 Tigger3b 1229 - 462 617 158245 49 0 3 80 11 7 16 chain 8712 chr9 141213431 + 114931565 114931673 HY1 111 + 0 109 167132 78 0 1 30 chain 3792 chr9 141213431 + 114932935 114932979 MER89 557 + 0 44 210501 44 chain 5980 chr9 141213431 + 114941104 114941202 L1MB3 1562 + 1446 1545 185422 23 1 0 45 7 9 22 chain 106363 chr9 141213431 + 114952027 114953324 L1PA7 6471 - 19 2439 35159 144 0 1 301 0 1 197 0 3 120 0 4 52 10 9 146 0 5 250 2 1112 75 chain 30996 chr9 141213431 + 114967334 114967774 L1PA16 3655 - 1661 2114 82522 40 4 5 31 2 1 116 5 9 46 5 2 7 0 9 54 0 3 130 chain 9794 chr9 141213431 + 114967993 114968146 MER2 342 + 66 215 161623 13 7 4 32 2 1 99 chain 4349 chr9 141213431 + 114989088 114989139 MER58B 340 - 243 294 202608 51 chain 5071 chr9 141213431 + 115010684 115010768 L1PB1 5432 + 5314 5392 194405 12 3 1 5 1 0 14 2 0 24 1 0 22 chain 7750 chr9 141213431 + 115014537 115014627 5S 121 + 0 90 172603 90 chain 21561 chr9 141213431 + 115045084 115045451 THE1D 372 + 0 372 121920 15 0 2 37 11 3 115 52 62 101 4 5 32 chain 17770 chr9 141213431 + 115047021 115047332 THE1D-int 1627 + 1310 1622 133513 18 51 50 138 1 0 12 0 1 36 0 1 22 0 1 5 10 9 14 0 1 4 chain 3614 chr9 141213431 + 115063662 115063706 L1MD2 1676 + 1070 1114 213428 44 chain 23560 chr9 141213431 + 115102880 115103168 AluSp 311 + 0 294 112798 91 0 3 95 6 9 96 chain 19082 chr9 141213431 + 115107140 115107379 AluSp 311 + 9 248 129873 24 0 1 77 2 1 136 chain 11943 chr9 141213431 + 115112364 115112618 L1PB1 5432 + 5168 5398 152427 52 18 16 45 1 0 15 26 12 18 3 1 4 1 0 15 6 4 20 1 0 22 1 0 6 chain 6435 chr9 141213431 + 115126299 115126434 L1MC1 2226 - 179 309 181738 12 1 0 30 0 1 12 3 1 11 24 21 42 chain 26014 chr9 141213431 + 115127523 115127891 THE1B 368 + 0 368 99963 15 13 11 11 0 5 130 2 1 17 10 8 170 chain 27329 chr9 141213431 + 115127910 115128288 THE1B-int 1605 + 19 568 95179 50 1 2 187 1 138 27 3 28 18 0 8 91 chain 29928 chr9 141213431 + 115135480 115135860 MLT2A1 477 - 94 477 85025 193 1 0 17 1 5 168 chain 204058 chr9 141213431 + 115135860 115138396 HERVL-int 5654 - 0 2591 18921 73 12 15 25 16 39 143 0 3 131 2 0 121 0 2 24 6 29 58 0 2 26 1 0 152 0 1 648 0 5 166 0 20 365 19 0 101 8 3 439 chain 28008 chr9 141213431 + 115138831 115139205 MLT2A1 477 - 99 477 92974 93 0 3 29 9 6 74 1 5 168 chain 24895 chr9 141213431 + 115150471 115150760 AluSg 306 + 11 300 105377 289 chain 68128 chr9 141213431 + 115154232 115155210 MER11A 1151 - 0 993 49195 15 0 1 6 1 0 54 8 12 75 6 7 60 0 1 24 28 10 24 8 41 92 0 1 17 0 1 20 5 6 51 13 5 89 0 1 94 0 1 115 0 2 32 4 0 64 1 0 72 chain 88034 chr9 141213431 + 115156455 115157708 HERVK11-int 2540 - 306 1496 40360 115 24 17 78 1 0 189 1 0 104 17 12 430 21 1 33 13 2 27 28 17 22 3 0 7 10 7 7 0 2 34 1 0 65 2 0 21 chain 75886 chr9 141213431 + 115161369 115162386 MER11A 1151 - 0 1151 45555 50 11 15 98 6 7 60 0 1 37 29 34 13 0 26 125 0 1 140 6 7 93 0 1 149 4 0 66 1 0 58 0 99 71 chain 50711 chr9 141213431 + 115175989 115176573 LTR10C 591 - 0 581 58496 261 3 0 320 chain 14490 chr9 141213431 + 115182956 115183244 MER75B 242 + 0 231 142918 31 73 0 77 6 17 5 2 0 76 0 9 11 2 0 5 chain 5268 chr9 141213431 + 115225316 115225540 L1ME1 1623 - 138 354 192334 39 6 0 8 30 31 4 1 0 16 85 83 35 chain 134395 chr9 141213431 + 115276034 115278184 SVA_F 1814 + 335 1814 27133 492 503 0 28 1 0 32 0 1 49 2 0 10 79 15 67 101 0 158 1 0 627 chain 14822 chr9 141213431 + 115276596 115276801 SVA_F 1814 + 847 1067 78318 8 1 0 31 5 6 56 14 29 90 chain 18979 chr9 141213431 + 115276801 115277029 SVA_F 1814 + 827 1067 72198 28 1 0 25 1 0 18 2 1 48 4 19 101 chain 6493 chr9 141213431 + 115277152 115277230 SVA_F 1814 + 1187 1265 72198 78 chain 6188 chr9 141213431 + 115277297 115277367 SVA_F 1814 + 916 1001 154327 31 0 15 39 chain 2270 chr9 141213431 + 115288489 115288523 MSTD 398 - 2 37 235766 9 1 2 24 chain 21999 chr9 141213431 + 115351594 115351869 AluSp 311 + 0 289 120232 118 3 7 112 0 10 42 chain 36375 chr9 141213431 + 115354083 115354555 LTR10F 562 - 0 562 74393 280 10 16 13 0 24 34 1 57 11 0 4 123 chain 6233 chr9 141213431 + 115356928 115357279 L1MB7 1623 - 197 512 183292 30 2 0 8 141 125 15 78 54 7 1 0 42 5 12 22 chain 20587 chr9 141213431 + 115421091 115421328 AluY 311 + 73 311 125342 59 0 1 178 chain 25937 chr9 141213431 + 115434694 115434996 AluY 311 + 2 305 100261 130 0 1 172 chain 58569 chr9 141213431 + 115435895 115436728 L1PA11 4918 - 289 1088 53662 18 47 33 11 2 0 13 1 0 15 13 9 10 8 3 12 1 0 17 1 0 13 2 0 68 2 0 13 2 1 66 1 0 497 chain 21461 chr9 141213431 + 115477459 115477765 Tigger3b 1229 - 270 576 122297 48 8 0 17 0 1 79 0 1 37 5 6 45 0 3 37 0 2 30 chain 23811 chr9 141213431 + 115490376 115490660 AluSp 311 + 4 287 111407 38 1 0 245 chain 2869 chr9 141213431 + 115491022 115491054 MLT1D 503 + 124 156 227542 32 chain 567226 chr9 141213431 + 115560407 115566439 L1HS 6032 - 0 6029 78 3099 4 0 2860 0 1 69 chain 5804 chr9 141213431 + 115568369 115568509 MER20 218 - 45 189 187102 22 63 67 55 chain 19153 chr9 141213431 + 115594854 115595065 L1PA4 6152 + 5939 6150 129671 211 chain 3585 chr9 141213431 + 115595354 115595396 L1MB2 1706 - 13 55 213892 42 chain 5964 chr9 141213431 + 115614605 115614692 MER2 342 + 164 240 185565 7 11 0 69 chain 253224 chr9 141213431 + 115741160 115744150 L1PA7 6471 + 3430 6465 16067 119 0 4 19 1 9 207 0 1 607 0 5 193 0 9 66 0 8 511 2 1 280 0 5 140 0 1 138 0 3 35 0 1 348 0 2 179 1 0 8 1 0 85 0 4 41 3 0 6 chain 289821 chr9 141213431 + 115751834 115755732 L1PA10 4194 - 33 3962 14030 11 1 0 33 7 5 207 0 1 83 1 5 361 1 3 343 2 3 150 17 14 12 0 1 38 0 3 62 0 1 66 0 1 58 0 3 10 6 10 21 0 1 55 2 13 40 0 1 20 4 6 16 0 1 155 1 6 326 0 4 396 1 0 351 0 4 283 0 8 37 1 0 113 6 10 89 0 2 141 1 0 88 16 8 15 0 1 48 2 3 6 1 0 14 7 0 8 3 0 5 1 0 7 0 3 9 1 0 7 25 22 14 40 39 10 2 0 21 2 1 6 1 0 11 chain 40044 chr9 141213431 + 115777605 115778057 L1PA5 6144 + 5681 6137 69254 312 1 5 139 chain 135073 chr9 141213431 + 115791733 115793262 L1PA6 6164 + 4358 5904 27002 10 0 4 275 1 0 180 0 5 70 1 0 612 2 0 228 0 11 80 0 1 70 chain 31968 chr9 141213431 + 115794163 115794592 MER57A1 433 - 0 433 80906 13 6 10 10 1 0 122 6 7 271 chain 21921 chr9 141213431 + 115795578 115795891 LTR5B 1012 - 685 1012 120540 185 1 14 38 28 29 61 chain 51818 chr9 141213431 + 115826812 115827445 LTR6A 649 - 15 649 57743 45 1 0 177 2 1 24 1 3 338 1 2 44 chain 51818 chr9 141213431 + 115832260 115832893 LTR6A 649 - 15 649 57742 45 1 0 177 2 1 24 1 3 338 1 2 44 chain 51818 chr9 141213431 + 115837706 115838339 LTR6A 649 - 15 649 57741 45 1 0 177 2 1 24 1 3 338 1 2 44 chain 51818 chr9 141213431 + 115843148 115843781 LTR6A 649 - 15 649 57740 45 1 0 177 2 1 24 1 3 338 1 2 44 chain 51818 chr9 141213431 + 115848594 115849227 LTR6A 649 - 15 649 57739 45 1 0 177 2 1 24 1 3 338 1 2 44 chain 3554 chr9 141213431 + 115855980 115856024 L1MC1 2226 + 2000 2045 214471 29 0 1 15 chain 44411 chr9 141213431 + 115857713 115858313 LTR43 600 + 0 600 63682 39 21 24 381 2 0 131 2 1 24 chain 93771 chr9 141213431 + 115902812 115903891 MER11C 1089 + 0 1079 38418 567 12 11 129 0 1 371 chain 57987 chr9 141213431 + 115934129 115934789 L1PA6 6164 - 2 658 53982 6 4 0 650 chain 25154 chr9 141213431 + 115937098 115937371 AluYa5 310 + 38 310 103996 85 1 0 187 chain 2784 chr9 141213431 + 115943628 115943658 MER58A 224 + 49 79 228961 30 chain 22300 chr9 141213431 + 115956455 115956741 L1PA2 6032 + 5778 6032 118909 243 32 0 11 chain 9799 chr9 141213431 + 115957357 115957485 MER85 139 + 0 139 161600 96 3 14 29 chain 12087 chr9 141213431 + 115972013 115972186 LTR54 533 + 326 505 151847 23 0 1 12 0 2 60 6 10 50 1 0 21 chain 44332 chr9 141213431 + 115972881 115973428 MLT2A2 560 + 9 560 63786 541 0 4 6 chain 84344 chr9 141213431 + 116012034 116012957 L1PA3long 6157 + 5224 6146 41772 83 1 0 839 chain 20679 chr9 141213431 + 116069307 116069564 AluSq2 311 + 20 278 125038 109 1 2 13 3 0 7 0 3 124 chain 25742 chr9 141213431 + 116076167 116076459 AluY 311 + 0 302 101112 39 0 10 253 chain 24138 chr9 141213431 + 116076909 116077195 AluSp 311 - 27 311 109529 112 1 0 40 1 0 132 chain 29577 chr9 141213431 + 116095650 116095960 AluYb9 318 - 8 318 86292 310 chain 3695 chr9 141213431 + 116104920 116104980 Tigger3a 397 - 323 384 212017 21 6 7 33 chain 3435 chr9 141213431 + 116121443 116121481 MIR 256 - 94 132 216473 38 chain 34660 chr9 141213431 + 116123135 116123595 MER31A 484 + 0 478 76678 96 3 1 209 1 0 69 0 2 19 4 23 59 chain 13941 chr9 141213431 + 116132598 116132776 MER30B 195 - 0 187 144787 63 0 2 6 0 6 39 0 1 70 chain 83711 chr9 141213431 + 116141339 116142333 LTR5B 1012 - 0 1012 42033 490 1 2 32 1 0 351 0 14 111 0 4 8 chain 7659 chr9 141213431 + 116142348 116142472 MER39B 650 + 464 579 173169 75 18 9 31 chain 443881 chr9 141213431 + 116199855 116205860 L1PA7 6471 - 12 6466 8930 815 1 0 23 1 0 2988 0 1 868 0 3 8 3 0 177 82 94 184 27 52 61 13 145 40 18 11 82 404 705 56 23 10 131 chain 5251 chr9 141213431 + 116235449 116235563 MLT1F1 559 - 438 554 192508 38 4 33 9 27 0 36 chain 29981 chr9 141213431 + 116249377 116249690 AluYb8 318 - 5 318 84871 313 chain 13904 chr9 141213431 + 116272279 116272578 L1PB1 5432 - 48 318 144900 14 1 0 20 23 19 6 1 0 12 9 0 17 9 6 10 1 0 42 8 7 10 2 1 53 2 0 9 6 2 9 1 0 7 1 0 26 chain 21348 chr9 141213431 + 116338262 116338507 AluY 311 + 64 310 122695 68 0 1 177 chain 2611 chr9 141213431 + 116360184 116360276 MIRb 242 - 27 128 231533 17 51 60 24 chain 26765 chr9 141213431 + 116369832 116370130 AluYb8 318 + 0 318 97108 54 0 21 57 1 0 186 chain 21013 chr9 141213431 + 116399412 116399782 MSTA 426 + 0 405 123866 90 0 17 8 10 14 14 9 13 49 38 40 55 10 18 87 chain 14680 chr9 141213431 + 116403692 116403883 MER30B 195 - 0 195 142329 39 3 0 70 5 12 74 chain 24300 chr9 141213431 + 116447972 116448346 THE1C 375 + 0 375 108660 40 0 5 42 5 6 86 43 39 132 1 0 25 chain 10941 chr9 141213431 + 116458643 116458809 MSTA 426 + 0 190 156436 96 24 48 46 chain 15695 chr9 141213431 + 116469703 116470069 THE1B 368 + 0 368 139286 103 137 140 63 18 17 45 chain 42181 chr9 141213431 + 116486124 116486586 L1PA3long 6157 - 0 462 66423 462 chain 3174 chr9 141213431 + 116524894 116524927 LTR33 499 + 16 49 221442 33 chain 16525 chr9 141213431 + 116535714 116535934 AluY 311 + 83 301 136843 47 1 2 22 8 5 142 chain 4413 chr9 141213431 + 116554668 116554720 MER81 114 + 62 114 201761 52 chain 18390 chr9 141213431 + 116566334 116566612 AluJr4 308 + 36 307 131821 90 1 0 11 34 27 116 0 1 26 chain 16243 chr9 141213431 + 116568582 116568804 MER30 238 - 2 238 137642 37 3 0 71 4 21 107 chain 22851 chr9 141213431 + 116586916 116587265 THE1B 368 - 0 352 116334 43 17 18 89 24 27 22 1 0 153 chain 56415 chr9 141213431 + 116618400 116619112 L1PA8 5853 - 0 705 54899 93 1 0 16 1 0 56 1 0 6 13 12 62 2 0 44 1 0 416 chain 11597 chr9 141213431 + 116630642 116630934 L1MC4 1079 - 139 383 153904 24 4 0 13 60 22 17 5 1 20 39 38 38 1 0 71 chain 25388 chr9 141213431 + 116721286 116721598 AluSp 311 + 0 306 102747 26 1 0 165 0 2 101 7 0 12 chain 4709 chr9 141213431 + 116778657 116778794 MIR 256 - 31 175 198399 27 9 15 14 48 49 39 chain 157434 chr9 141213431 + 116802620 116804348 L1PA5 6144 - 0 1739 23671 140 0 8 701 0 3 887 chain 25791 chr9 141213431 + 116806917 116807301 L1PB 1623 - 170 513 100908 7 1 0 136 0 2 10 50 8 180 chain 20254 chr9 141213431 + 116849630 116849989 THE1B 368 - 0 361 126365 40 23 22 57 40 42 6 0 3 29 1 0 45 18 17 100 chain 2840 chr9 141213431 + 116880343 116880375 MER5A1 166 - 134 166 228081 32 chain 4558 chr9 141213431 + 116888263 116888362 MIR 256 + 36 136 200121 18 33 34 48 chain 23186 chr9 141213431 + 116906323 116906589 AluSp 311 - 34 300 114745 266 chain 4353 chr9 141213431 + 116941991 116942087 MIRb 242 - 109 205 202544 39 32 31 14 0 1 11 chain 6106 chr9 141213431 + 117040573 117040761 HAL1-2a_MD 234 - 3 234 184376 13 17 0 37 33 101 22 23 20 9 5 0 29 chain 11364 chr9 141213431 + 117048905 117049028 L1PA4 6152 + 6025 6148 154838 123 chain 5762 chr9 141213431 + 117075575 117075651 MADE1 96 + 5 96 187521 39 0 15 37 chain 23222 chr9 141213431 + 117079521 117079800 AluY 311 + 27 302 114580 96 2 0 11 2 0 168 chain 4113 chr9 141213431 + 117109232 117109298 MIRb 242 + 96 158 205729 45 5 1 16 chain 8283 chr9 141213431 + 117117019 117117144 Tigger3b 1229 - 896 1028 169501 5 3 0 37 0 4 36 2 8 42 chain 22981 chr9 141213431 + 117120989 117121250 L1PA4 6152 + 5869 6137 115711 127 0 7 134 chain 8824 chr9 141213431 + 117227162 117227269 MLT1A0 366 - 12 119 166533 107 chain 4682 chr9 141213431 + 117230374 117230427 MIR 256 + 72 125 198729 53 chain 21743 chr9 141213431 + 117319867 117320196 MER41B 635 - 290 635 121233 6 2 0 63 14 24 91 2 3 21 7 15 82 1 0 40 chain 11505 chr9 141213431 + 117333967 117334147 MER30 238 - 0 193 154281 19 3 2 18 3 0 71 4 0 7 6 27 49 chain 4590 chr9 141213431 + 117341016 117341066 LTR54 533 - 74 124 199744 50 chain 27975 chr9 141213431 + 117342668 117343196 MER50 708 + 142 683 93089 33 29 43 73 128 127 265 chain 21046 chr9 141213431 + 117358438 117358685 AluY 311 + 57 300 123745 70 4 0 173 chain 120021 chr9 141213431 + 117362446 117364286 THE1A-int 1579 - 8 1579 31051 73 1 6 60 0 1 171 8 11 51 33 3 123 0 2 79 5 6 246 29 27 95 260 2 140 0 4 106 1 4 344 0 2 15 chain 27595 chr9 141213431 + 117364286 117364636 THE1A 353 - 0 353 94357 75 1 0 100 0 5 65 1 0 108 chain 26893 chr9 141213431 + 117372322 117372618 AluSp 311 - 15 311 96651 296 chain 7585 chr9 141213431 + 117377737 117377835 HY1 111 - 1 98 173635 32 1 0 65 chain 3202 chr9 141213431 + 117389992 117390026 MIRb 242 - 101 135 220900 34 chain 23476 chr9 141213431 + 117431725 117431995 AluSp 311 - 16 286 113234 270 chain 20348 chr9 141213431 + 117445455 117445736 L1PA5 6144 - 0 257 126071 11 3 1 136 1 0 41 23 2 66 chain 28981 chr9 141213431 + 117465061 117465377 AluYb8 318 - 5 318 89088 5 2 0 182 1 0 126 chain 13048 chr9 141213431 + 117484667 117484841 L1PB4 2604 + 2399 2572 148038 154 5 4 15 chain 58235 chr9 141213431 + 117490039 117490705 L1PA4 6152 - 0 661 53842 6 4 0 12 1 0 643 chain 15929 chr9 141213431 + 117492161 117492385 L1PA8 5853 + 5633 5853 138580 45 13 11 51 2 1 25 1 0 87 chain 79678 chr9 141213431 + 117502872 117504059 L1PB1 5432 + 4251 5413 43745 40 0 7 311 0 4 15 3 0 41 5 10 424 1 2 8 4 1 24 1 0 8 22 12 11 3 1 50 19 17 44 1 0 6 22 10 30 3 1 4 1 0 12 1 0 4 1 0 22 1 0 21 1 0 13 1 0 9 chain 49527 chr9 141213431 + 117512222 117512813 L1PA7 6471 - 1 591 59368 70 5 4 516 chain 27876 chr9 141213431 + 117514301 117514601 AluYd8 298 + 0 296 93433 114 4 0 182 chain 26164 chr9 141213431 + 117515420 117515731 L1PA5 6144 + 5827 6140 99349 88 0 2 223 chain 12854 chr9 141213431 + 117564349 117564523 MER67C 710 + 509 687 148823 39 5 9 130 chain 8207 chr9 141213431 + 117584853 117584953 L1PA16 3655 + 3475 3575 169916 100 chain 30663 chr9 141213431 + 117611346 117611736 L1PA8 5853 + 5469 5853 83100 95 1 0 44 2 0 74 1 0 8 1 0 50 2 1 19 2 1 79 0 1 12 chain 264127 chr9 141213431 + 117632261 117636467 L1P2 5180 + 370 4004 15478 76 19 0 59 12 2 8 1 0 47 75 1 172 27 6 32 10 25 142 12 31 35 7 16 18 4 5 4 1 0 64 0 1 4 1 0 64 9 12 119 1 0 5 3 4 126 10 11 152 0 1 193 0 2 11 4 0 221 3 6 139 521 0 391 6 10 79 0 2 36 8 7 63 0 1 5 9 12 301 0 1 64 0 1 75 0 4 382 0 14 63 15 12 260 1 0 37 chain 44653 chr9 141213431 + 117634158 117634663 L1PA4 6152 + 5635 6140 63430 505 chain 114794 chr9 141213431 + 117637599 117639148 THE1C-int 1605 - 16 1578 32846 241 0 2 5 1 0 222 6 6 231 6 5 98 33 33 96 1 0 131 1 0 6 2 3 58 0 7 111 1 7 130 0 1 169 chain 15254 chr9 141213431 + 117647000 117647320 MER50 708 - 35 317 140617 33 24 0 8 1 28 62 4 0 35 73 36 80 chain 44611 chr9 141213431 + 117652426 117653373 L1M1 2793 + 568 1401 63467 11 1 0 11 3 0 9 130 62 30 70 53 21 26 21 16 1 0 27 4 3 7 1 0 54 18 15 43 0 1 51 1 0 143 1 0 33 2 1 65 5 0 24 4 0 6 12 9 117 chain 6470 chr9 141213431 + 117653616 117653695 L1PB 1623 + 1310 1389 181473 79 chain 18545 chr9 141213431 + 117688512 117688728 AluY 311 + 85 303 131369 190 0 2 26 chain 3977 chr9 141213431 + 117697158 117697203 MADE1 96 - 0 45 207723 45 chain 4893 chr9 141213431 + 117697912 117697987 L1MA4A 3247 + 3058 3133 196349 42 1 2 5 1 0 26 chain 29955 chr9 141213431 + 117706509 117706828 AluYb9 318 - 0 318 84959 119 1 0 199 chain 12343 chr9 141213431 + 117707686 117707857 MER30 238 - 0 192 150851 107 15 36 49 chain 10939 chr9 141213431 + 117711496 117711673 MER30 238 + 36 238 156450 68 12 28 21 5 7 39 2 9 30 chain 69788 chr9 141213431 + 117724835 117725838 MER11A 1151 - 0 1148 48477 165 2 3 16 1 0 42 0 9 57 57 89 23 1 5 51 15 18 134 0 1 94 19 20 130 4 0 118 0 99 74 chain 59596 chr9 141213431 + 117730132 117730884 MER4E1 777 + 17 770 53054 169 2 9 346 24 18 211 chain 87867 chr9 141213431 + 117736539 117737525 L1PA4 6152 - 1734 2727 40354 103 0 1 731 0 6 152 chain 148867 chr9 141213431 + 117737525 117739234 L1PA4 6152 + 4437 6152 24776 7 0 1 1082 0 3 152 0 2 468 chain 4336 chr9 141213431 + 117869590 117869641 MER58A 224 - 132 183 202769 51 chain 13129 chr9 141213431 + 117891191 117891369 THE1B 368 - 188 368 147728 8 1 0 85 8 11 76 chain 290156 chr9 141213431 + 117938597 117942202 HERVH-int 3825 - 0 3825 14010 225 0 2 260 8 218 36 35 38 457 0 1 4 1 0 482 11 16 306 0 1 8 1 0 301 1 0 13 1 3 23 9 0 205 15 0 271 0 1 175 1 0 77 1 0 30 3 41 17 1 0 10 7 1 14 5 1 8 1 0 10 1 0 39 5 0 153 0 2 84 0 2 290 chain 22402 chr9 141213431 + 117978928 117979285 THE1B 368 + 0 367 118474 169 1 0 19 32 39 8 5 0 7 0 8 95 7 8 14 chain 43906 chr9 141213431 + 117989538 117990087 MLT2A2 560 - 2 560 64327 68 0 1 84 1 7 194 0 1 128 0 1 74 chain 40688 chr9 141213431 + 117991623 117992126 LTR3B_ 500 - 0 500 68314 142 0 1 54 5 1 302 chain 21085 chr9 141213431 + 118005985 118006357 THE1C 375 - 0 375 123601 26 1 0 39 1 0 34 0 1 71 0 1 7 15 14 41 64 68 73 chain 17930 chr9 141213431 + 118018641 118019039 MSTA 426 - 0 426 133031 124 77 98 16 49 54 21 13 14 49 0 1 49 chain 21811 chr9 141213431 + 118023310 118023686 THE1C 375 - 0 375 120978 157 3 0 5 0 3 6 7 10 41 20 0 8 3 20 40 28 27 58 chain 176530 chr9 141213431 + 118071059 118073014 L1PA2 6032 - 0 1954 21300 640 4 0 133 4 0 73 0 4 326 1 0 620 0 4 154 chain 5673 chr9 141213431 + 118094883 118094978 L1PB4 2604 - 52 147 188360 49 12 11 4 0 1 30 chain 16474 chr9 141213431 + 118107608 118107798 L1PA5 6144 + 5950 6140 136993 190 chain 39390 chr9 141213431 + 118108483 118109033 MLT2A2 560 + 0 560 70182 360 21 22 17 3 14 32 1 0 69 1 0 46 chain 24369 chr9 141213431 + 118109349 118109656 THE1B-int 1605 - 5 312 108272 279 3 2 4 0 1 21 chain 25353 chr9 141213431 + 118115065 118115362 L1PA7 6471 - 4 300 102934 9 1 0 287 chain 49277 chr9 141213431 + 118117676 118118403 HSMAR1 1287 + 525 1263 59530 38 0 1 6 1 0 36 0 6 132 3 2 163 69 75 67 0 1 39 1 0 172 chain 22612 chr9 141213431 + 118120624 118121006 THE1D 372 + 0 372 117524 75 19 0 109 52 58 32 0 4 62 2 1 31 chain 27441 chr9 141213431 + 118143516 118143871 THE1A 353 - 0 353 94844 155 1 0 88 2 1 109 chain 9498 chr9 141213431 + 118176158 118176283 MER4D 903 - 8 128 163085 107 5 0 13 chain 103857 chr9 141213431 + 118180706 118181868 L1PA3long 6157 - 708 1880 35755 166 1 2 90 0 4 754 0 1 13 0 3 100 0 1 38 chain 64336 chr9 141213431 + 118181868 118182586 L1PA3long 6157 + 5446 6157 50870 39 7 0 672 chain 18279 chr9 141213431 + 118188339 118188659 THE1D 372 - 40 356 132131 107 1 0 25 33 34 34 0 4 49 35 27 36 chain 118234 chr9 141213431 + 118190268 118191564 L1PA3long 6157 - 1 1302 31716 675 0 1 172 0 4 449 chain 81962 chr9 141213431 + 118191564 118192491 L1PA3long 6157 + 3935 4866 42619 257 1 2 158 0 1 439 0 2 72 chain 25187 chr9 141213431 + 118214152 118214448 AluSp 311 - 6 300 103815 9 2 0 285 chain 39048 chr9 141213431 + 118235459 118235911 LTR7 482 + 0 482 70668 249 1 0 12 0 31 190 chain 294424 chr9 141213431 + 118235913 118239659 HERVH-int 3825 + 0 3824 13740 534 200 6 30 1 0 9 2 1 24 29 0 13 4 21 12 6 26 21 1 0 58 0 1 7 0 2 14 0 3 653 0 1 18 0 2 227 6 33 290 1 15 228 0 1 820 14 19 31 8 218 116 0 1 369 chain 5644 chr9 141213431 + 118236535 118236636 HERVH-int 3825 + 436 534 188625 52 2 0 12 21 20 14 chain 39410 chr9 141213431 + 118240748 118241197 LTR7 482 + 0 480 70144 264 0 31 185 chain 5606 chr9 141213431 + 118259284 118259352 MER45A 178 - 109 177 189029 68 chain 22672 chr9 141213431 + 118271923 118272219 AluSc 308 - 7 300 117203 13 5 0 11 0 2 267 chain 23681 chr9 141213431 + 118284086 118284452 THE1C 375 + 6 375 112147 12 0 1 54 40 41 66 14 15 180 chain 77131 chr9 141213431 + 118289666 118290500 L1PA2 6032 - 8 844 44900 135 0 1 62 0 1 637 chain 58454 chr9 141213431 + 118290500 118291137 L1PA2 6032 + 4533 5172 53509 463 0 2 174 chain 23550 chr9 141213431 + 118297007 118297362 L1PA8 5853 + 5505 5853 112850 59 1 0 41 6 4 66 19 17 48 2 1 19 3 2 91 chain 87696 chr9 141213431 + 118308903 118310175 MER11A 1151 - 0 1151 40491 60 7 6 199 0 3 21 31 2 54 2 1 292 130 17 191 0 11 66 1 0 22 0 1 118 0 8 69 0 1 9 chain 23667 chr9 141213431 + 118317641 118317998 THE1D 372 - 0 372 112218 148 39 52 9 0 1 83 5 6 73 chain 11501 chr9 141213431 + 118327418 118327551 THE1B-int 1605 - 8 141 154296 133 chain 26459 chr9 141213431 + 118328152 118328509 THE1B 368 + 0 359 98211 15 2 0 25 0 5 127 15 14 173 chain 27206 chr9 141213431 + 118328518 118328919 THE1B-int 1605 + 0 366 95575 13 1 3 5 0 1 229 45 7 108 chain 27328 chr9 141213431 + 118380910 118381264 THE1A 353 - 0 353 95182 155 1 0 88 1 0 25 0 1 84 chain 124849 chr9 141213431 + 118381272 118382810 THE1A-int 1579 - 8 1552 29439 64 1 0 204 0 10 282 1 0 355 0 1 150 7 3 457 0 1 17 chain 27742 chr9 141213431 + 118382837 118383191 THE1A 353 - 0 353 93896 155 1 0 78 0 1 11 1 0 108 chain 15147 chr9 141213431 + 118383952 118384268 THE1B 368 - 40 368 140926 38 0 9 51 1 0 16 9 16 29 1 0 46 85 83 40 chain 21633 chr9 141213431 + 118401763 118402008 L1P1 4361 - 40 283 121643 16 1 0 155 1 0 72 chain 62436 chr9 141213431 + 118402008 118402698 L1PA4 6152 + 5463 6152 51706 671 1 0 18 chain 2875 chr9 141213431 + 118428529 118428563 MLT1C 463 - 365 399 227434 34 chain 6803 chr9 141213431 + 118454855 118454935 MER20 218 + 113 194 178933 62 0 1 18 chain 51742 chr9 141213431 + 118464533 118465116 L1PA5 6144 + 5554 6137 57792 583 chain 24231 chr9 141213431 + 118468330 118468631 L1PB1 5432 - 336 638 109038 290 0 1 11 chain 107242 chr9 141213431 + 118468643 118469882 L1PA6 6164 - 1789 3030 34886 1185 0 1 4 2 3 48 chain 154869 chr9 141213431 + 118469882 118471671 L1PA6 6164 + 4379 6162 23996 703 0 2 1016 5 1 55 4 0 6 chain 32999 chr9 141213431 + 118475212 118475643 MER84 505 - 69 505 79214 23 1 0 21 0 4 101 4 5 227 1 2 53 chain 472337 chr9 141213431 + 118485938 118492221 L1PA8A 6298 + 34 6288 7963 6 1 0 12 5 4 9 2 0 8 12 4 14 5 0 8 2 4 18 12 8 19 1 0 6 27 24 11 2 0 15 45 38 10 7 9 5 2 0 42 2 1 21 8 0 78 2 0 13 17 14 33 15 0 7 4 19 17 1 0 264 2 1 314 0 1 13 0 4 33 0 11 78 1 0 57 0 2 202 0 4 393 2 1 357 0 2 29 0 1 223 7 0 281 0 1 169 0 1 156 1 4 95 1 2 52 5 6 137 1 0 140 0 1 280 5 6 46 1 3 475 0 12 16 7 11 149 0 2 21 0 1 19 0 2 119 3 4 37 4 1 153 8 9 38 0 1 109 1 0 5 2 1 91 0 2 68 29 0 933 0 1 127 chain 19251 chr9 141213431 + 118525283 118525651 THE1B 368 + 0 368 129373 50 23 24 95 2 0 5 3 5 19 0 3 9 0 4 18 1 0 5 14 13 61 38 32 25 chain 101548 chr9 141213431 + 118530366 118531490 L1PA3long 6157 - 0 1124 36387 1124 chain 64726 chr9 141213431 + 118531490 118532180 L1PA3long 6157 + 4323 5013 50687 690 chain 18640 chr9 141213431 + 118541289 118541489 L1PA4 6152 - 269 469 131106 200 chain 8456 chr9 141213431 + 118541489 118541581 L1PA5 6144 + 6049 6141 168532 92 chain 15247 chr9 141213431 + 118546332 118546626 THE1B 368 + 0 297 140640 102 34 33 34 1 0 29 0 3 8 44 46 42 chain 15675 chr9 141213431 + 118547861 118548072 L1PA8 5853 + 5646 5853 139349 33 1 0 9 1 0 52 2 1 19 1 0 93 chain 26707 chr9 141213431 + 118556211 118556498 AluYb8 318 - 0 287 97299 287 chain 175833 chr9 141213431 + 118562807 118564745 L1PA4 6152 - 1489 3434 21368 625 0 7 1313 chain 131328 chr9 141213431 + 118564745 118566212 L1PA4 6152 + 4681 6151 27677 619 0 1 699 0 2 149 chain 4799 chr9 141213431 + 118574387 118574451 L1MA8 2339 + 2195 2257 197365 41 2 0 21 chain 14537 chr9 141213431 + 118594975 118595285 THE1D 372 + 41 372 142779 15 44 55 55 63 73 133 chain 15280 chr9 141213431 + 118600238 118600456 MER30 238 + 0 232 140540 105 8 19 71 4 7 30 chain 4323 chr9 141213431 + 118601348 118601456 MER4C 627 - 511 596 202927 22 45 22 41 chain 40433 chr9 141213431 + 118601456 118601907 LTR7 482 - 0 482 68686 190 0 31 261 chain 302717 chr9 141213431 + 118603172 118606755 HERVH-int 3825 - 0 3825 13291 487 8 218 1404 4 31 462 15 0 307 0 3 132 0 3 8 0 2 12 0 1 57 1 0 42 0 37 15 29 0 24 1 0 10 1 0 38 5 0 310 0 11 211 chain 39596 chr9 141213431 + 118606757 118607208 LTR7 482 - 0 482 69892 202 2 33 247 chain 139862 chr9 141213431 + 118620171 118621915 L1PA7 6471 - 1 1777 26163 12 2 1 32 8 9 404 0 2 326 1 0 69 1 0 56 0 4 77 0 1 528 1 0 157 1 2 14 5 32 50 chain 97864 chr9 141213431 + 118621921 118623100 L1PA7 6471 + 3456 4644 37311 548 7 6 277 1 10 277 1 0 4 0 1 4 0 1 60 chain 393238 chr9 141213431 + 118634985 118640324 L1PB1 5432 - 87 5374 10346 13 9 6 18 1 5 7 17 0 16 1 0 43 1 0 16 2 1 53 2 0 8 14 12 11 1 0 21 9 0 12 3 1 183 0 1 290 4 0 297 4 21 123 13 4 221 1 0 224 21 16 129 5 14 56 7 6 509 1 0 486 1 5 24 14 0 1072 28 26 140 2 0 203 2 0 19 0 1 5 5 4 76 0 3 5 3 1 13 0 12 301 4 0 138 2 1 91 20 4 109 5 6 205 chain 112132 chr9 141213431 + 118680078 118681318 L1PA3long 6157 - 0 1240 33482 339 1 0 422 0 1 478 chain 153943 chr9 141213431 + 118681318 118683007 L1PA3long 6157 + 3230 4918 24096 32 0 1 4 1 0 1627 1 0 24 chain 17807 chr9 141213431 + 118689525 118689899 THE1D 372 + 0 370 133387 40 16 7 27 3 0 6 12 16 76 78 81 82 1 2 33 chain 9710 chr9 141213431 + 118714576 118714715 L1PA8 5853 + 5716 5853 162032 24 2 1 19 2 1 92 chain 356692 chr9 141213431 + 118721185 118725239 L1P1 4361 - 290 4353 11440 790 0 1 1010 0 1 192 0 6 595 0 1 41 0 1 699 1 0 726 chain 3345 chr9 141213431 + 118736450 118736493 L1MC2 1988 + 1801 1843 218132 37 1 0 5 chain 21045 chr9 141213431 + 118749598 118749840 AluSg7 307 - 54 296 123752 242 chain 4778 chr9 141213431 + 118846086 118846394 MLT1H1 527 - 146 516 197603 48 236 298 24 chain 2654 chr9 141213431 + 118874009 118874104 L1MD2 1676 + 1349 1448 230980 30 46 51 11 1 0 7 chain 209300 chr9 141213431 + 118879975 118882874 L1PA7 6471 - 11 2519 18541 145 1 0 132 0 3 112 0 1 437 10 9 64 0 1 280 0 1 125 400 0 201 1 0 687 0 3 49 1 4 254 chain 29907 chr9 141213431 + 118881299 118881673 L1PA7 6471 - 1 372 85075 11 0 4 22 7 0 334 chain 92962 chr9 141213431 + 118882947 118884046 L1P3 4156 + 2647 3756 38668 794 4 6 99 0 8 202 chain 7174 chr9 141213431 + 118884495 118884623 L1PB 1623 - 1384 1506 176244 44 22 17 7 1 0 54 chain 3601 chr9 141213431 + 118937580 118937676 L1MA8 2339 + 2169 2264 213623 25 22 24 15 6 4 20 1 0 7 chain 6777 chr9 141213431 + 119013444 119013548 MER121 330 - 126 231 179133 83 10 11 11 chain 29558 chr9 141213431 + 119029870 119030188 AluYb8 318 + 0 316 86383 123 2 0 193 chain 8681 chr9 141213431 + 119119126 119119237 L1PA8 5853 + 5742 5852 167298 18 4 3 89 chain 5811 chr9 141213431 + 119155869 119155949 MADE1 96 + 0 96 187029 42 1 17 37 chain 3289 chr9 141213431 + 119171136 119171184 MER5A 189 - 42 91 219196 32 1 2 15 chain 44548 chr9 141213431 + 119198985 119199486 L1PA3long 6157 + 5644 6157 63527 363 1 3 80 0 10 57 chain 29217 chr9 141213431 + 119201473 119201778 AluYa5 310 - 5 310 87974 305 chain 53673 chr9 141213431 + 119216692 119217327 L1PA5 6144 + 5499 6144 56565 131 0 7 46 0 2 309 4 5 145 chain 20714 chr9 141213431 + 119258985 119259288 THE1B 368 - 62 368 124921 64 1 0 12 18 21 8 0 3 29 1 0 87 1 0 82 chain 38856 chr9 141213431 + 119263487 119263909 L1PA3long 6157 - 241 663 70936 422 chain 20056 chr9 141213431 + 119263909 119264141 L1PA3long 6157 + 5925 6157 126951 232 chain 528859 chr9 141213431 + 119271302 119277401 L1PA5 6144 - 13 6130 4317 818 0 3 531 0 4 87 0 1 1623 0 1 76 0 1 455 3 0 10 1 4 204 0 2 671 0 1 612 1 0 360 4 0 224 0 9 412 0 1 7 chain 51324 chr9 141213431 + 119284128 119284924 L1PB1 5432 + 4650 5414 58084 57 0 1 337 1 0 53 18 16 24 8 6 14 4 0 10 2 0 52 2 1 16 1 0 45 1 0 14 1 0 4 2 0 7 9 1 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 10 chain 515826 chr9 141213431 + 119293651 119299556 L1PA5 6144 - 4 6141 5591 133 5 6 699 0 5 674 0 1 82 3 4 1549 0 1 968 0 6 110 1 0 100 0 1 1493 0 217 88 chain 3581 chr9 141213431 + 119360755 119360798 MADE1 96 - 2 45 213960 43 chain 323997 chr9 141213431 + 119374443 119378164 L1PA5 6144 + 2422 6144 12438 237 0 1 99 0 1 179 1 2 152 0 2 62 6 1 252 4 1 444 0 1 485 0 4 949 1 0 850 chain 19566 chr9 141213431 + 119424065 119424297 L1PA5 6144 + 5907 6144 128473 219 2 7 11 chain 23373 chr9 141213431 + 119436165 119436524 LTR8 732 + 36 420 113792 6 6 0 114 43 44 41 0 2 8 0 1 73 0 27 68 chain 90966 chr9 141213431 + 119437835 119440178 HUERS-P1-int 2401 + 170 2139 39303 31 9 0 4 48 0 29 1 0 8 6 1 34 4 0 13 11 8 15 42 20 12 42 14 13 1 0 12 2 0 44 3 0 7 1 0 34 55 35 26 7 4 14 10 1 16 33 29 87 1 2 8 2 0 24 1 5 107 11 3 175 1 0 14 1 0 5 5 3 36 19 14 17 0 1 27 13 10 28 3 0 80 50 46 63 0 2 29 2 0 5 1 0 19 1 0 40 34 33 61 2 0 4 0 1 35 3 4 14 3 0 37 1 2 19 2 0 8 4 0 28 91 70 15 9 0 18 5 0 9 4 0 14 4 0 6 184 97 6 1 0 12 2 1 36 1 0 15 5 0 13 19 0 8 3 0 3 1 0 22 33 22 4 1 0 9 9 7 47 2 0 15 chain 314517 chr9 141213431 + 119441863 119445315 L1PA3long 6157 + 2700 6157 12827 85 0 4 1157 0 1 2210 chain 29245 chr9 141213431 + 119465699 119466018 L1PA2 6032 + 5713 6032 87822 319 chain 22815 chr9 141213431 + 119472741 119473039 AluSp 311 + 14 309 116507 34 12 11 118 2 0 132 chain 29313 chr9 141213431 + 119477076 119477387 AluYa5 310 + 0 310 87478 132 1 0 178 chain 4605 chr9 141213431 + 119490021 119490082 MIRb 242 + 54 113 199567 13 2 0 46 chain 54480 chr9 141213431 + 119516070 119516789 L1PA7 6471 - 1 699 56042 104 6 0 47 40 0 10 11 35 127 0 1 374 chain 24091 chr9 141213431 + 119543119 119543404 AluSp 311 - 13 301 109793 166 1 0 109 0 4 9 chain 24221 chr9 141213431 + 119546936 119547229 AluSp 311 + 10 303 109082 293 chain 8460 chr9 141213431 + 119550313 119550522 L1MA7 2200 + 1871 2045 168510 77 70 50 9 15 0 38 chain 11809 chr9 141213431 + 119597915 119598056 MER4E1 777 + 626 767 152987 141 chain 131540 chr9 141213431 + 119602162 119603649 SVA_D 2077 - 6 2019 27738 633 1 0 29 0 403 15 0 83 174 0 40 312 0 1 323 chain 19977 chr9 141213431 + 119605348 119605654 L1PA16 3655 + 3221 3533 127217 63 10 8 47 0 2 11 1 0 13 5 4 20 4 5 22 0 7 110 chain 3529 chr9 141213431 + 119647294 119647336 MLT1C 463 - 285 327 214893 42 chain 15731 chr9 141213431 + 119658898 119659207 THE1D 372 - 40 372 139172 16 4 5 77 54 69 34 4 0 23 7 9 4 1 0 14 1 11 70 chain 18878 chr9 141213431 + 119673907 119674150 AluY 311 + 6 261 130430 106 0 1 48 5 14 32 5 7 47 chain 27013 chr9 141213431 + 119680142 119680479 THE1A 353 + 0 336 96244 109 2 1 226 chain 3406 chr9 141213431 + 119697600 119697638 MIRb 242 + 67 105 216976 38 chain 29426 chr9 141213431 + 119801477 119801874 L1PA8 5853 + 5463 5853 86950 99 1 0 48 2 0 67 3 2 20 1 0 41 2 1 19 1 0 93 chain 4223 chr9 141213431 + 119818475 119818567 MLT1F2 592 + 497 591 204260 45 27 29 20 chain 11033 chr9 141213431 + 119826767 119826916 L1PB4 2604 + 2422 2570 156080 130 1 0 18 chain 555975 chr9 141213431 + 119828296 119834315 L1PA2 6032 - 0 6032 728 712 0 13 4395 1 0 869 0 1 42 chain 21001 chr9 141213431 + 119851819 119852216 L1PB1 5432 - 2 364 123911 8 2 0 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 4 3 1 16 9 0 15 3 0 16 1 0 43 1 0 16 2 1 53 2 0 8 7 3 9 1 0 13 1 0 19 5 0 8 2 5 34 chain 2940 chr9 141213431 + 119891381 119891415 LTR8 732 - 667 701 226326 34 chain 22218 chr9 141213431 + 119933776 119934148 THE1D 372 + 0 372 119271 14 0 2 146 21 17 7 0 7 37 0 3 5 26 17 71 15 16 30 chain 124640 chr9 141213431 + 119960522 119962336 L1PA8 5853 - 214 1917 29496 31 2 0 44 1 0 80 113 1 106 0 3 162 17 18 132 0 3 43 5 7 380 0 9 38 0 1 132 4 0 70 23 24 15 4 0 240 20 9 43 2 5 107 chain 7209 chr9 141213431 + 119960704 119960788 L1PA8 5853 - 0 84 176002 84 chain 4263 chr9 141213431 + 119999426 119999505 MADE1 96 + 0 96 203713 23 3 4 12 4 20 37 chain 124992 chr9 141213431 + 120033717 120035286 THE1A-int 1579 - 0 1579 29395 60 0 2 39 0 1 102 0 1 635 1 2 20 0 1 52 0 1 156 6 5 62 0 2 106 0 1 235 0 1 95 chain 23952 chr9 141213431 + 120035311 120035641 THE1A 353 - 22 353 110610 159 11 13 48 4 3 108 chain 6260 chr9 141213431 + 120072158 120072263 MER45A 178 + 62 178 183092 42 19 30 44 chain 3783 chr9 141213431 + 120116042 120116086 L1MC1 2226 + 1930 1974 210621 44 chain 25067 chr9 141213431 + 120153556 120153908 THE1B 368 - 12 368 104472 157 3 5 19 5 3 8 1 0 90 0 2 30 0 5 24 2 0 13 chain 31774 chr9 141213431 + 120153913 120154308 THE1B-int 1605 - 5 397 81209 24 8 5 363 chain 51972 chr9 141213431 + 120234721 120235297 L1PA4 6152 - 6 582 57636 576 chain 26498 chr9 141213431 + 120280586 120280946 THE1B 368 + 0 368 98048 40 0 15 117 5 4 22 6 1 94 1 0 75 chain 3051 chr9 141213431 + 120292621 120292655 MIR3 191 - 84 118 223980 34 chain 17246 chr9 141213431 + 120315809 120316007 AluY 311 + 104 303 134936 28 0 1 170 chain 30354 chr9 141213431 + 120333463 120333877 MER51B 395 + 0 395 83765 23 0 1 9 19 6 149 6 0 57 1 0 150 chain 67580 chr9 141213431 + 120369214 120369963 L1PA3long 6157 - 4 751 49408 255 7 5 487 chain 9694 chr9 141213431 + 120388526 120388725 L1MA3 4352 + 4157 4322 162113 4 0 1 73 4 0 25 3 1 21 1 0 6 1 0 15 33 6 13 chain 111786 chr9 141213431 + 120404176 120405569 LTR12C 1709 - 0 1709 33729 82 1 0 69 1 0 142 0 1 181 6 10 106 9 6 158 0 278 210 9 3 82 0 43 40 0 1 297 chain 2861 chr9 141213431 + 120410070 120410103 MLT1F 544 - 0 33 227662 33 chain 184351 chr9 141213431 + 120419841 120421924 L1PA5 6144 - 0 2084 20555 141 1 2 116 2 0 591 1 0 1224 0 3 7 chain 10186 chr9 141213431 + 120427379 120427745 MLT2D 439 - 79 437 159694 19 159 155 95 43 44 28 6 1 16 chain 4776 chr9 141213431 + 120428636 120428699 Tigger1 2417 + 2210 2271 197632 46 2 0 15 chain 12597 chr9 141213431 + 120428805 120428975 Tigger1 2417 + 2206 2374 149854 50 2 0 118 chain 23408 chr9 141213431 + 120438001 120438370 THE1D 372 + 0 357 113610 13 0 2 25 12 0 129 27 25 113 8 9 24 1 0 17 chain 20991 chr9 141213431 + 120460410 120460727 THE1C 375 + 1 314 123953 17 0 1 4 1 0 43 6 4 55 3 0 48 21 22 119 chain 7442 chr9 141213431 + 120470274 120470366 U6 107 - 1 93 174497 92 chain 12063 chr9 141213431 + 120488149 120488320 L1PBa1 4058 - 3880 4047 151930 123 1 0 5 5 3 11 1 0 25 chain 34534 chr9 141213431 + 120508248 120508779 MER1A 529 - 0 529 76857 63 12 9 16 1 0 217 1 2 136 66 68 12 1 0 6 chain 25292 chr9 141213431 + 120511418 120511786 THE1B 368 - 0 368 103262 57 1 0 5 1 2 11 1 0 75 21 23 29 1 0 166 chain 24111 chr9 141213431 + 120515812 120516156 THE1B 368 - 17 368 109690 102 5 7 12 1 0 16 3 7 7 1 0 6 0 4 21 1 0 169 chain 18934 chr9 141213431 + 120534361 120534585 L1PA6 6164 + 5937 6161 130275 224 chain 35353 chr9 141213431 + 120568134 120568572 L1PA7 6471 - 3 431 75726 9 9 0 374 1 0 45 chain 29900 chr9 141213431 + 120597646 120598093 MLT2A1 477 + 0 477 85102 22 1 2 144 8 5 6 0 1 23 0 1 154 5 1 10 35 69 39 chain 116237 chr9 141213431 + 120614122 120615510 LTR12C 1709 + 0 1709 32361 294 1 2 140 0 1 103 3 43 67 0 278 184 1 0 5 3 1 106 0 4 481 chain 7465 chr9 141213431 + 120639560 120639721 L1PB1 5432 + 5280 5420 174371 16 14 1 30 22 17 26 1 0 21 1 0 13 1 0 16 chain 7260 chr9 141213431 + 120643826 120643916 MLT2A2 560 - 470 560 175709 90 chain 14151 chr9 141213431 + 120644399 120644596 MER30 238 - 0 209 144035 42 3 0 69 4 19 79 chain 3344 chr9 141213431 + 120644801 120644838 MSTA 426 + 389 426 218148 37 chain 4209 chr9 141213431 + 120665575 120665628 MSTA 426 - 236 289 204426 53 chain 119213 chr9 141213431 + 120671563 120673273 L1PB1 5432 + 3734 5424 31329 103 0 2 106 0 5 677 11 8 169 3 11 199 0 2 48 0 1 38 1 0 10 63 54 50 8 6 14 1 0 43 1 0 16 27 15 16 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 108871 chr9 141213431 + 120701596 120702794 L1PA3long 6157 - 15 1213 34471 1198 chain 48226 chr9 141213431 + 120706879 120707467 LTR10C 591 - 0 591 60298 15 1 0 5 0 1 40 4 5 15 5 7 503 chain 191011 chr9 141213431 + 120710531 120712657 L1PA4 6152 - 18 2146 19956 495 0 1 1138 0 1 493 chain 3920 chr9 141213431 + 120712657 120712700 L1P1 4361 + 1069 1112 201144 43 chain 11249 chr9 141213431 + 120746338 120746472 L1PA5 6144 - 0 135 155225 13 0 1 121 chain 3864 chr9 141213431 + 120752011 120752056 MER3 215 - 6 51 209380 45 chain 8409 chr9 141213431 + 120775398 120775537 L1MA8 2339 - 2199 2335 168794 60 10 9 31 1 0 21 2 1 14 chain 90069 chr9 141213431 + 120780715 120781735 L1PA5 6144 - 761 1786 39628 81 1 5 471 5 6 462 chain 53894 chr9 141213431 + 120781735 120782352 L1PA5 6144 + 5519 6135 56431 288 1 0 328 chain 18598 chr9 141213431 + 120792516 120792881 THE1B 368 - 1 368 131236 101 4 1 22 70 74 47 37 39 4 1 0 79 chain 8820 chr9 141213431 + 120803782 120803877 L1PA2 6032 + 5937 6032 166551 95 chain 99138 chr9 141213431 + 120804148 120805423 L1PA8 5853 + 4589 5853 36991 145 0 1 274 9 0 24 0 1 530 1 0 44 2 0 66 18 16 4 0 1 45 2 1 19 2 1 37 0 2 53 chain 80947 chr9 141213431 + 120827138 120828173 L1PB1 5432 - 966 2010 43217 440 1 0 255 0 4 39 3 9 297 chain 3052 chr9 141213431 + 120846638 120846688 MLT2A2 560 - 0 48 223977 8 0 4 28 6 0 8 chain 75257 chr9 141213431 + 120879122 120879996 MER11D 897 - 0 897 45892 279 2 25 593 chain 239310 chr9 141213431 + 120885448 120888098 L1PA4 6152 - 1 2651 16810 1377 2 0 509 0 3 580 1 0 181 chain 34469 chr9 141213431 + 120979679 120980077 L1PA7 6471 + 6072 6466 76959 66 1 0 317 3 0 11 chain 45447 chr9 141213431 + 121022052 121022684 L1PA8 5853 - 4 638 62551 89 1 0 19 2 1 16 40 38 7 1 0 71 2 0 44 1 0 232 0 1 85 0 3 16 0 6 6 chain 9631 chr9 141213431 + 121054843 121055016 L1MA8 2339 - 186 340 162433 34 19 0 18 5 6 85 2 1 10 chain 21566 chr9 141213431 + 121055043 121055296 L1PA5 6144 + 5889 6142 121898 253 chain 54853 chr9 141213431 + 121103806 121104456 L1PA7 6471 - 14 672 55799 447 1 9 202 chain 60080 chr9 141213431 + 121134960 121135716 L1PA5 6144 + 5419 6143 52787 381 30 6 162 4 5 38 9 0 132 chain 8660 chr9 141213431 + 121168902 121168994 L1PA3long 6157 + 6065 6157 167429 92 chain 38172 chr9 141213431 + 121247910 121248364 LTR7 482 - 0 482 71881 187 1 32 9 2 0 26 1 0 228 chain 320969 chr9 141213431 + 121249431 121253223 HERVH-int 3825 - 0 3825 12560 795 0 1 276 3 4 300 0 1 242 2 0 490 4 31 462 15 0 307 0 3 132 0 3 13 0 2 7 0 1 56 2 1 26 3 41 12 1 0 15 29 0 24 1 0 10 1 0 30 12 7 310 0 11 212 chain 38758 chr9 141213431 + 121253225 121253675 LTR7 482 - 0 482 71067 187 1 32 37 0 1 225 chain 20657 chr9 141213431 + 121257620 121257861 L1PA4 6152 - 0 244 125118 12 1 4 228 chain 499202 chr9 141213431 + 121257861 121263926 L1PA6 6164 - 97 6164 6881 49 3 4 258 0 1 48 0 2 389 0 4 219 13 11 403 1 0 311 1 5 29 6 1 152 1 2 473 6 5 155 1 2 91 0 1 262 0 1 974 0 2 190 7 0 301 6 2 59 0 1 379 0 2 712 1 0 22 5 1 25 7 9 312 1 5 193 chain 520898 chr9 141213431 + 121266824 121272943 L1PA5 6144 + 18 6129 5068 1151 9 0 94 16 0 931 0 2 395 0 1 1745 0 4 286 3 0 640 0 5 237 0 1 471 0 8 6 1 0 134 chain 25797 chr9 141213431 + 121307941 121308296 THE1C 375 - 25 375 100888 30 12 10 128 0 1 61 3 0 7 9 8 105 chain 59799 chr9 141213431 + 121319140 121319879 L1PA8 5853 + 5120 5853 52931 4 0 1 437 1 0 45 3 1 25 0 1 45 1 0 9 1 0 15 1 0 36 3 2 21 1 0 91 chain 54695 chr9 141213431 + 121350430 121351192 MER4E1 777 - 0 760 55906 23 0 2 16 2 0 180 25 17 15 0 9 32 2 0 133 1 0 120 0 1 28 0 1 13 1 0 52 10 9 109 chain 134030 chr9 141213431 + 121387213 121388901 L1PA8 5853 - 0 1683 27202 90 4 3 16 1 0 49 2 1 10 10 9 67 2 0 46 1 0 69 2 0 5 1 3 401 0 2 72 2 0 550 0 1 117 1 2 170 chain 40093 chr9 141213431 + 121388901 121389435 L1PA8 5853 + 3609 4143 68954 49 0 1 293 1 0 118 3 2 9 5 6 56 chain 27591 chr9 141213431 + 121393765 121394136 THE1C 375 - 0 375 94374 26 1 0 210 0 4 18 8 9 108 chain 42765 chr9 141213431 + 121396220 121396732 MER9a2 513 - 0 513 65702 180 0 1 332 chain 15680 chr9 141213431 + 121403295 121403508 LTR46-int 301 + 95 299 139331 56 1 0 109 9 1 38 chain 8116 chr9 141213431 + 121421013 121421114 L1PA2 6032 - 8 103 170404 84 6 0 11 chain 28762 chr9 141213431 + 121429790 121430090 AluYa5 310 - 10 310 90058 300 chain 136533 chr9 141213431 + 121439619 121441356 SVA_B 1603 - 0 1603 26741 627 1 0 14 55 4 33 4 0 42 5 1 17 1 0 12 2 1 195 79 0 610 6 5 19 0 8 15 chain 2379 chr9 141213431 + 121440271 121440316 SVA_B 1603 - 647 687 132931 23 1 0 13 4 0 4 chain 7101 chr9 141213431 + 121440627 121440706 SVA_B 1603 - 983 1062 130719 79 chain 31384 chr9 141213431 + 121450406 121450877 MLT2A2 560 + 0 560 81846 180 2 0 78 23 0 37 9 118 43 0 5 35 5 4 5 0 1 54 chain 5115 chr9 141213431 + 121459309 121459393 L1MC1 2226 - 220 299 193913 14 2 0 14 3 0 51 chain 29552 chr9 141213431 + 121483007 121483321 AluYb8 318 + 0 314 86408 314 chain 37712 chr9 141213431 + 121531840 121532308 MER4A1 472 - 0 472 72540 398 1 5 69 chain 42717 chr9 141213431 + 121542092 121542640 MLT2A2 560 + 2 560 65754 180 1 0 217 3 14 147 chain 5365 chr9 141213431 + 121543230 121543300 L1MA3 4352 + 4159 4233 191363 33 0 4 37 chain 94218 chr9 141213431 + 121570694 121572057 LTR12C 1709 - 0 1709 38292 84 1 0 44 3 11 196 2 1 26 56 58 61 11 4 20 24 0 86 16 63 85 0 1 31 0 277 282 14 57 24 1 2 296 chain 23796 chr9 141213431 + 121598241 121598612 THE1B 368 + 0 368 111496 59 28 28 80 10 9 28 3 0 5 1 4 80 1 0 47 1 0 28 chain 4201 chr9 141213431 + 121615699 121615753 L1MEf 1413 + 966 1020 204523 54 chain 20665 chr9 141213431 + 121625220 121625519 L1PREC2 3366 + 2459 2775 125089 52 12 11 129 10 21 76 0 7 20 chain 69088 chr9 141213431 + 121656548 121657364 L1PA7 6471 + 5651 6468 48767 191 3 5 246 0 1 365 2 0 9 chain 10948 chr9 141213431 + 121678386 121678542 L1MA2 4263 - 1130 1284 156409 101 8 4 35 0 2 12 chain 3095 chr9 141213431 + 121682685 121682724 L1MA2 4263 - 3148 3196 223014 30 0 9 9 chain 18789 chr9 141213431 + 121684539 121684739 L1PA3long 6157 - 1451 1651 130712 200 chain 131185 chr9 141213431 + 121684740 121686182 L1PA3long 6157 + 4702 6149 27821 608 0 4 693 0 1 141 chain 44612 chr9 141213431 + 121699855 121700669 L1PA14 3548 - 63 849 63466 20 1 0 10 6 0 40 1 0 7 11 10 5 1 0 15 4 2 33 5 1 11 11 10 13 11 7 80 1 0 63 9 10 11 1 0 6 2 0 7 18 14 105 26 22 23 29 28 94 0 1 21 0 4 113 chain 29557 chr9 141213431 + 121715378 121715692 AluYb8 318 - 4 318 86391 314 chain 67408 chr9 141213431 + 121733439 121734197 L1PA5 6144 + 5360 6138 49480 322 0 20 436 chain 21537 chr9 141213431 + 121768245 121768470 AluYa5 310 + 85 310 122017 225 chain 7077 chr9 141213431 + 121786016 121786151 MLT1B 390 - 265 385 176905 74 5 6 18 6 0 6 6 0 8 4 0 8 chain 157565 chr9 141213431 + 121800727 121802501 L1PA4 6152 - 9 1767 23651 865 16 0 893 chain 22860 chr9 141213431 + 121805977 121806225 AluYd8 298 + 31 280 116290 232 0 1 16 chain 420979 chr9 141213431 + 121825693 121830454 L1PA4 6152 - 13 4762 9511 230 0 2 71 28 0 155 0 2 190 0 3 178 0 4 952 0 4 1490 0 1 1467 chain 10524 chr9 141213431 + 121841311 121841462 MER30 238 + 58 224 158152 51 4 22 68 3 0 25 chain 64869 chr9 141213431 + 121866810 121867531 L1PA4 6152 + 5409 6130 50623 721 chain 59127 chr9 141213431 + 121895298 121895947 L1PA3long 6157 - 2226 2875 53061 649 chain 201250 chr9 141213431 + 121895947 121898166 L1PA3long 6157 + 3926 6157 19120 1224 0 1 159 0 4 698 0 7 138 chain 27421 chr9 141213431 + 121919301 121919654 THE1A 353 + 0 353 94903 68 1 2 40 1 0 92 1 0 57 0 1 93 chain 1755 chr9 141213431 + 121931107 121931383 L1PA7 6471 + 5807 6086 65919 194 0 2 8 0 1 74 chain 545282 chr9 141213431 + 121931394 121937410 L1PA2 6032 + 0 6032 2037 72 1 2 182 1 0 27 1 0 55 5 4 84 0 1 313 1 0 27 0 1 2370 0 2 1289 9 0 356 0 4 108 0 22 1098 2 0 15 chain 2448 chr9 141213431 + 121937421 121937806 L1PA7 6471 + 6086 6467 65919 118 7 3 260 chain 9061 chr9 141213431 + 121968795 121968906 MLT1B 390 + 231 342 165253 111 chain 28441 chr9 141213431 + 122008454 122008898 MLT2A2 560 + 0 560 91418 179 2 1 13 36 39 63 0 98 12 1 12 39 0 5 38 1 0 6 0 1 54 chain 20826 chr9 141213431 + 122026988 122027240 AluSg7 307 - 49 299 124517 126 2 0 124 chain 8005 chr9 141213431 + 122029026 122029131 L1MA7 2200 - 286 390 171016 83 2 1 20 chain 4266 chr9 141213431 + 122085057 122085121 MIR 256 + 72 136 203671 24 0 1 6 2 1 32 chain 10376 chr9 141213431 + 122113191 122113410 L1PA8 5853 - 0 214 158799 19 0 36 10 55 18 10 1 0 16 1 0 44 1 0 21 1 0 40 chain 4332 chr9 141213431 + 122161063 122161340 MER33 330 + 6 283 202802 26 210 210 41 chain 9515 chr9 141213431 + 122176322 122176447 MSTA 426 - 300 426 162998 106 4 5 15 chain 131390 chr9 141213431 + 122189474 122191253 L1PA8 5853 + 4072 5853 27781 180 0 1 87 5 2 148 0 1 400 1 2 89 1 7 17 1 0 3 2 0 440 0 1 22 0 1 91 1 0 44 2 0 67 65 66 19 1 0 93 chain 4613 chr9 141213431 + 122197121 122197256 MER5B 177 - 30 164 199476 33 63 62 39 chain 5943 chr9 141213431 + 122211017 122211149 MER20 218 + 38 174 185752 28 41 46 50 1 0 12 chain 18586 chr9 141213431 + 122218130 122218458 THE1C 375 + 0 329 131268 13 2 0 34 69 67 106 0 3 66 5 7 33 chain 121673 chr9 141213431 + 122237859 122239214 L1PA4 6152 + 4788 6143 30488 1355 chain 436533 chr9 141213431 + 122264895 122270230 L1PA7 6471 + 741 6467 9151 434 0 1 1456 0 2 48 0 1 11 0 1 6 5 3 185 0 4 207 0 4 430 2 1 320 0 1 481 1 2 291 5 4 207 0 359 130 5 6 55 0 18 213 1 5 76 1 0 320 0 1 47 2 3 231 3 4 6 2 0 144 2 0 8 chain 18729 chr9 141213431 + 122271068 122271290 L1PA7 6471 - 4 227 130881 145 0 1 77 chain 3180 chr9 141213431 + 122274080 122274115 MADE1 96 - 61 96 221339 35 chain 97918 chr9 141213431 + 122280126 122282131 L1PA5 6144 + 5009 6144 37301 475 1 0 239 5 0 275 864 0 146 chain 4710 chr9 141213431 + 122281928 122281981 L1PA5 6144 + 5939 5992 198392 53 chain 18197 chr9 141213431 + 122298576 122298784 L1PA7 6471 + 6227 6432 132336 86 1 0 7 2 0 112 chain 18450 chr9 141213431 + 122308878 122309224 THE1B 368 + 2 368 131642 45 68 75 8 0 2 39 1 0 29 1 0 14 22 35 119 chain 84028 chr9 141213431 + 122323274 122324219 L1PA5 6144 + 5198 6142 41891 23 0 1 589 2 0 331 chain 6783 chr9 141213431 + 122324857 122324952 MER74A 558 - 465 558 179082 45 1 0 29 2 0 5 0 1 13 chain 106345 chr9 141213431 + 122343869 122345144 L1PA7 6471 - 16 1290 35167 834 1 0 440 chain 73037 chr9 141213431 + 122345144 122345995 L1PA7 6471 + 4322 5181 46966 199 0 4 143 0 4 509 chain 4746 chr9 141213431 + 122367072 122367131 MLT1C 463 + 59 118 197958 59 chain 121542 chr9 141213431 + 122368658 122370160 L1PA8A 6298 - 8 1543 30522 62 12 19 58 0 6 236 0 8 24 0 1 302 0 1 71 16 28 655 6 4 60 chain 33027 chr9 141213431 + 122382700 122383203 L1PA13 3608 + 3001 3488 79175 67 1 4 86 2 1 114 3 1 62 23 12 46 1 0 17 0 1 31 9 5 20 1 0 20 chain 558624 chr9 141213431 + 122383610 122389628 L1PA2 6032 - 8 6029 440 2963 0 1 2486 1 5 206 2 0 360 chain 3301 chr9 141213431 + 122398210 122398265 MLT1G1 539 + 3 59 218966 16 7 8 32 chain 18820 chr9 141213431 + 122399121 122399485 THE1B 368 + 0 368 130610 107 27 28 34 67 71 66 7 6 56 chain 125137 chr9 141213431 + 122403721 122405171 L1PA4 6152 - 0 1435 29348 6 1 0 736 0 8 641 23 1 43 chain 6894 chr9 141213431 + 122417237 122417424 MER33 330 + 57 249 178229 38 0 1 4 55 57 22 0 3 9 18 17 41 chain 19963 chr9 141213431 + 122430935 122431180 L1PA7 6471 - 14 260 127263 176 6 7 63 chain 5886 chr9 141213431 + 122489141 122489204 L1PA2 6032 - 4 67 186313 63 chain 64315 chr9 141213431 + 122507762 122508473 L1PA5 6144 + 5433 6144 50878 711 chain 28466 chr9 141213431 + 122531845 122532159 AluYa5 310 + 0 308 91318 97 2 0 29 4 0 182 chain 28223 chr9 141213431 + 122584749 122585101 THE1A 353 + 2 353 92218 108 1 0 88 1 0 79 0 1 75 chain 130363 chr9 141213431 + 122585101 122586675 THE1A-int 1579 + 0 1574 28002 435 5 7 841 1 2 187 3 0 102 chain 26171 chr9 141213431 + 122586680 122587034 THE1A 353 + 0 353 99321 89 0 1 16 15 14 78 1 0 155 chain 16669 chr9 141213431 + 122620376 122620739 THE1B 368 - 0 368 136488 124 139 143 76 0 1 24 chain 127276 chr9 141213431 + 122631620 122633124 LTR12C 1709 - 0 1709 28748 481 0 4 93 1 5 9 2 0 6 1 0 74 0 200 523 1 0 4 6 7 303 chain 14205 chr9 141213431 + 122661358 122661544 L1PB4 2604 - 32 218 143862 20 1 0 126 0 1 39 chain 158027 chr9 141213431 + 122662423 122664316 L1PA7 6471 - 17 1918 23588 106 1 0 217 8 7 81 0 2 90 0 1 326 0 4 76 0 1 103 0 1 371 0 1 488 0 1 7 1 0 18 chain 4274 chr9 141213431 + 122664321 122664370 L1P2 5180 + 2063 2112 203553 49 chain 45401 chr9 141213431 + 122682139 122682666 L1PA7 6471 - 1 529 62594 171 3 4 353 chain 6855 chr9 141213431 + 122683202 122683489 L1MA6 2487 - 196 560 178541 12 2 0 34 176 255 63 chain 54326 chr9 141213431 + 122693662 122694304 L1PA5 6144 + 5502 6143 56149 383 1 0 258 chain 40002 chr9 141213431 + 122775589 122776133 MLT2A2 560 + 4 560 69319 29 0 5 130 10 7 31 6 5 190 0 11 148 chain 23380 chr9 141213431 + 122782654 122783008 THE1A 353 + 0 353 113760 12 3 1 34 7 8 35 5 4 89 8 9 6 1 0 9 0 1 145 chain 561483 chr9 141213431 + 122817513 122823542 L1PA2 6032 + 0 6029 304 257 1 0 4255 0 1 1516 chain 86256 chr9 141213431 + 122830016 122830960 L1PA3long 6157 - 0 943 41055 339 1 0 604 chain 10866 chr9 141213431 + 122830968 122831094 L1PA3long 6157 + 5082 5207 156718 82 2 1 42 chain 4456 chr9 141213431 + 122840047 122840102 MIR 256 - 108 163 201274 55 chain 73224 chr9 141213431 + 122847238 122848232 MER11A 1151 - 16 1151 46916 50 1 0 9 0 6 74 0 2 66 0 3 31 2 60 275 6 5 144 0 1 21 0 1 71 37 0 11 0 11 66 1 0 74 0 99 55 chain 31080 chr9 141213431 + 122864138 122864487 L1PA4 6152 - 550 900 82381 307 0 1 42 chain 47946 chr9 141213431 + 122864493 122865031 L1PA4 6152 + 5600 6139 60526 330 1 0 71 0 1 36 0 1 100 chain 114281 chr9 141213431 + 122884865 122886135 L1PA4 6152 - 1080 2350 33003 1270 chain 95705 chr9 141213431 + 122886135 122887217 L1PA4 6152 + 5073 6149 37851 925 6 0 151 chain 6579 chr9 141213431 + 122929102 122929183 MADE1 96 - 6 88 180615 43 0 1 38 chain 19339 chr9 141213431 + 122934649 122935052 L1PB1 5432 + 5060 5427 129112 43 1 2 9 3 0 24 2 0 8 1 0 12 15 9 44 0 1 6 2 1 18 6 5 37 2 1 16 3 0 6 16 6 18 3 1 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 107195 chr9 141213431 + 122939931 122941244 L1PA8A 6298 - 6 1332 34786 717 1 0 5 0 2 75 1 4 49 5 12 15 1 0 99 0 1 93 0 1 23 0 1 229 chain 229038 chr9 141213431 + 122941244 122944002 L1PA8A 6298 + 2172 4954 17355 213 0 11 104 4 1 39 0 1 399 0 6 458 0 1 84 1 2 178 0 1 208 0 1 224 0 7 30 1 0 135 0 1 408 2 1 176 2 1 92 chain 35671 chr9 141213431 + 122961705 122962132 L1PA7 6471 - 10 439 75300 149 5 6 21 0 1 252 chain 24436 chr9 141213431 + 122962152 122962426 L1PA7 6471 + 5719 5993 107875 274 chain 18712 chr9 141213431 + 122977401 122977664 L1PB2 3958 + 3577 3837 130919 40 1 0 40 0 1 21 1 0 75 2 0 11 1 8 7 1 0 4 6 0 53 chain 2804 chr9 141213431 + 122982564 122982617 MIRb 242 - 103 157 228677 28 10 11 15 chain 37992 chr9 141213431 + 122986755 122987175 L1PA3long 6157 + 5736 6156 72144 420 chain 23349 chr9 141213431 + 123024800 123025091 AluY 311 + 9 296 113925 63 4 0 51 1 0 9 0 1 163 chain 4759 chr9 141213431 + 123029729 123029866 L1PB1 5432 + 5242 5362 197816 39 1 0 15 66 50 16 chain 457469 chr9 141213431 + 123032032 123039015 L1PA6 6164 - 2 5608 8492 151 0 1 694 0 4 50 1 2 107 1 2 459 7 8 40 0 1 271 0 4 109 323 3 598 0 5 96 7 6 31 0 1 32 1 2 295 11 13 177 1 2 24 14 8 14 11 4 509 0 3 62 1083 0 40 18 0 681 0 3 118 6 10 7 0 5 100 0 1 307 9 12 286 0 17 218 1 0 13 chain 90229 chr9 141213431 + 123036144 123037184 L1PA5 6144 + 5093 6133 39566 194 1 0 671 0 1 174 chain 23450 chr9 141213431 + 123039221 123039565 THE1B 368 + 0 368 113383 44 0 15 110 1 0 29 35 45 125 chain 121935 chr9 141213431 + 123066663 123068088 SVA_D 2077 + 63 2077 30401 49 0 18 476 1 41 119 40 0 34 0 40 38 0 535 30 0 2 9 0 1 614 7 0 8 chain 12488 chr9 141213431 + 123100276 123100419 MER87 546 - 307 450 150302 143 chain 5095 chr9 141213431 + 123117354 123117409 tRNA-Leu-CTG 83 - 2 57 194138 55 chain 2650 chr9 141213431 + 123120677 123120722 MIR 256 - 111 158 231008 29 5 7 11 chain 27783 chr9 141213431 + 123129528 123129838 AluYb8 318 + 11 314 93758 115 4 0 181 3 0 7 chain 315991 chr9 141213431 + 123190065 123193545 L1PA3long 6157 + 2674 6152 12761 1309 7 6 820 1 0 1343 chain 25537 chr9 141213431 + 123252087 123252384 AluSp 311 - 14 311 102067 297 chain 135540 chr9 141213431 + 123257385 123259709 SVA_F 1814 + 335 1814 26917 553 1 0 10 807 0 49 0 15 227 51 0 615 1 0 10 chain 3646 chr9 141213431 + 123257949 123257987 SVA_F 1814 + 1138 1176 199559 38 chain 5638 chr9 141213431 + 123257987 123258131 SVA_F 1814 + 937 1046 123401 10 1 15 18 49 0 66 chain 4012 chr9 141213431 + 123258016 123258065 SVA_F 1814 + 1107 1156 154783 49 chain 3229 chr9 141213431 + 123258131 123258184 SVA_F 1814 + 686 858 199997 19 2 122 28 1 0 3 chain 2653 chr9 141213431 + 123258184 123258218 SVA_F 1814 + 972 1006 196099 34 chain 35198 chr9 141213431 + 123258218 123258603 SVA_F 1814 + 892 1291 75922 56 0 15 311 1 0 17 chain 4215 chr9 141213431 + 123258618 123258664 SVA_F 1814 + 940 1001 171814 8 0 15 38 chain 2839 chr9 141213431 + 123259051 123259083 SVA_F 1814 + 869 900 182815 29 1 0 2 chain 74684 chr9 141213431 + 123277961 123278803 L1PA4 6152 + 5305 6151 46169 235 0 3 603 0 1 4 chain 36066 chr9 141213431 + 123292876 123293281 L1PA5 6144 + 5725 6132 74808 396 0 2 9 chain 87037 chr9 141213431 + 123314151 123315121 L1PA4 6152 + 5171 6141 40763 970 chain 10359 chr9 141213431 + 123339205 123339758 L1MB3 1562 + 1252 1464 158867 99 1 0 18 333 23 26 56 26 20 chain 61363 chr9 141213431 + 123398984 123399711 SVA_B 1603 + 697 1597 52168 87 0 164 27 1 0 34 1 0 154 0 4 62 0 4 15 0 3 298 1 0 9 0 1 38 chain 22916 chr9 141213431 + 123403135 123403431 L1PA16 3655 - 57 349 116031 5 1 0 15 3 0 272 chain 65711 chr9 141213431 + 123441134 123441900 L1PA5 6144 + 5365 6132 50242 319 8 9 439 chain 23146 chr9 141213431 + 123442235 123442609 L1M1 2793 - 1611 1990 114910 36 11 12 10 0 5 23 0 2 51 0 4 36 1 0 95 18 15 54 10 7 29 chain 21510 chr9 141213431 + 123445600 123445962 THE1D 372 + 1 360 122108 14 5 7 31 19 10 103 0 6 6 35 33 149 chain 6665 chr9 141213431 + 123448682 123448772 L1MB2 1706 + 1598 1693 179945 13 1 0 53 0 6 23 chain 24417 chr9 141213431 + 123464051 123464339 AluY 311 + 11 301 107983 120 0 2 168 chain 92451 chr9 141213431 + 123508613 123509770 LTR12C 1709 + 138 1709 38825 132 20 12 56 0 43 269 0 278 184 9 6 106 0 4 175 0 101 37 1 0 168 chain 20777 chr9 141213431 + 123552485 123552785 AluY 311 + 11 306 124686 30 21 15 76 13 11 7 0 3 153 chain 5813 chr9 141213431 + 123553039 123553108 L1PA6 6164 + 6089 6162 187009 60 0 4 9 chain 4591 chr9 141213431 + 123563646 123563700 L1MA8 2339 - 787 841 199732 54 chain 50214 chr9 141213431 + 123567152 123567817 LTR76 689 - 0 682 58857 42 1 0 279 0 1 87 0 2 107 13 32 52 0 1 37 10 6 6 1 0 30 chain 3372 chr9 141213431 + 123658352 123658398 MIRb 242 + 95 138 217634 38 3 0 5 chain 28820 chr9 141213431 + 123658717 123659030 AluYg6 310 - 0 310 89803 184 3 0 126 chain 5500 chr9 141213431 + 123679683 123679767 MIR 256 + 114 199 190038 39 7 8 38 chain 23355 chr9 141213431 + 123718585 123718959 L1PREC2 3366 + 2457 2842 113905 224 17 30 7 0 1 21 14 12 37 21 20 33 chain 22139 chr9 141213431 + 123735984 123736263 AluSq2 311 + 10 296 119625 87 0 1 109 2 8 81 chain 128189 chr9 141213431 + 123789667 123791119 L1PA6 6164 + 4699 6156 28527 529 0 1 788 0 2 35 0 2 100 chain 32319 chr9 141213431 + 123832094 123833092 L1MA5A 2387 + 1766 2296 80337 8 0 3 18 0 1 47 1 0 162 0 3 23 447 9 29 1 0 36 22 22 25 5 3 32 1 0 28 3 0 9 46 17 55 chain 11720 chr9 141213431 + 123844801 123844967 Tigger3b 1229 - 55 256 153383 56 1 26 90 1 11 18 chain 25050 chr9 141213431 + 123853096 123853436 THE1B 368 - 12 368 104546 63 1 0 91 2 0 8 0 2 20 8 6 23 0 4 80 0 15 44 chain 463504 chr9 141213431 + 123861304 123866806 L1PA6 6164 + 576 6162 8272 147 9 23 193 1 26 803 0 1 413 1 0 150 1 2 233 2 0 15 10 14 59 0 8 564 0 1 381 0 1 289 7 8 64 0 2 1323 0 4 15 4 7 59 0 17 197 1 2 413 0 2 6 3 1 87 0 4 52 chain 20255 chr9 141213431 + 123880950 123881284 MER2 342 + 0 332 126361 49 39 38 30 2 0 90 10 11 114 chain 518081 chr9 141213431 + 123889944 123896063 L1PA6 6164 - 8 6164 5375 29 0 11 794 0 4 401 3 8 71 11 7 360 0 3 102 0 4 47 1 0 49 0 1 356 0 1 271 0 4 438 1 0 4 0 1 298 0 1 557 0 1 155 1 0 322 1 0 52 0 3 70 0 1 194 1 0 461 0 1 73 11 9 158 10 27 289 4 0 8 0 1 277 11 3 200 1 2 27 chain 17416 chr9 141213431 + 123965449 123965717 7SLRNA 320 + 19 303 134465 73 44 61 7 1 0 143 chain 12036 chr9 141213431 + 123979835 123980013 MLT1B 390 - 217 390 152050 135 24 19 19 chain 29145 chr9 141213431 + 123981712 123982079 MER41E 591 + 0 366 88345 127 1 0 239 chain 12092 chr9 141213431 + 124018610 124019271 L1MA4 2864 + 2499 2804 151826 132 491 135 38 chain 4703 chr9 141213431 + 124025383 124025531 MER63B 433 - 0 146 198495 22 59 54 23 11 14 33 chain 20024 chr9 141213431 + 124025671 124026350 THE1D 372 - 0 372 127067 10 0 1 85 0 1 29 32 40 12 0 2 28 320 10 21 1 5 51 34 21 56 chain 2947 chr9 141213431 + 124035052 124035083 MIRb 242 - 110 141 226156 31 chain 15208 chr9 141213431 + 124039057 124039229 L1PA5 6144 + 5971 6143 140754 172 chain 14333 chr9 141213431 + 124124061 124124271 MER1B 344 - 5 223 143450 54 18 23 126 1 4 11 chain 2911 chr9 141213431 + 124127194 124127258 MIR 256 + 56 118 226842 31 21 19 12 chain 2821 chr9 141213431 + 124138588 124138622 L1MA4 2864 - 55 89 228436 34 chain 20072 chr9 141213431 + 124160082 124160399 L1MA5A 2387 - 1214 1534 126913 218 13 14 16 21 21 18 7 9 24 chain 5588 chr9 141213431 + 124170738 124170804 MER4-int 2692 + 2626 2692 189205 66 chain 51071 chr9 141213431 + 124170814 124171517 MER4A 717 + 2 684 58270 121 12 0 139 0 1 10 1 0 164 0 2 13 10 11 22 26 14 185 chain 455922 chr9 141213431 + 124177367 124182358 L1PA3long 6157 - 0 4990 8546 649 0 1 27 1 0 621 2 0 1057 0 1 2173 1 0 389 0 1 71 chain 75581 chr9 141213431 + 124191383 124192351 LTR5_Hs 974 + 0 974 45725 289 0 1 177 0 1 187 1 0 164 8 15 19 20 18 103 chain 3462 chr9 141213431 + 124197335 124197373 MER65A 464 + 0 38 215969 38 chain 112335 chr9 141213431 + 124198524 124199832 L1PA5 6144 + 4831 6143 33578 494 0 1 168 0 1 331 7 8 120 1 2 187 chain 2958 chr9 141213431 + 124210376 124210427 LTR79 453 + 314 356 225908 35 9 0 7 chain 51245 chr9 141213431 + 124230317 124230904 L1PA7 6471 - 14 606 58157 73 0 5 514 chain 11905 chr9 141213431 + 124233135 124233285 LTR8 732 + 583 732 152579 72 6 5 72 chain 44735 chr9 141213431 + 124237260 124237808 MER41A 554 + 0 554 63349 199 0 1 269 4 9 76 chain 131909 chr9 141213431 + 124275882 124277455 THE1A-int 1579 - 5 1579 27654 826 1 0 76 5 6 28 2 3 635 chain 6819 chr9 141213431 + 124282783 124282866 MER61E 571 - 488 571 178806 83 chain 16955 chr9 141213431 + 124284763 124284978 THE1B 368 + 153 366 135713 21 1 0 81 1 0 111 chain 9899 chr9 141213431 + 124285893 124286118 L1PB1 5432 - 5 207 161069 5 2 0 18 1 0 33 2 1 24 2 0 15 1 0 4 2 0 15 20 10 6 3 0 13 7 6 11 0 1 28 1 0 12 chain 24310 chr9 141213431 + 124296450 124296733 AluSp 311 - 17 300 108602 283 chain 11910 chr9 141213431 + 124348876 124349099 AluJb 308 + 62 296 152551 37 64 62 108 0 13 14 chain 15595 chr9 141213431 + 124410168 124410534 L1PB1 5432 + 5103 5427 139599 11 1 0 21 1 0 12 1 0 10 4 0 11 3 0 52 2 1 15 1 0 32 13 12 16 26 15 16 2 0 5 29 18 20 1 0 21 1 0 13 6 5 13 2 0 5 chain 24591 chr9 141213431 + 124421827 124422101 AluY 311 + 37 311 107034 274 chain 16923 chr9 141213431 + 124428776 124429042 L1PA8 5853 + 5609 5853 135786 66 22 4 11 2 0 50 2 1 16 5 4 92 chain 40843 chr9 141213431 + 124552280 124552729 LTR7 482 + 0 482 68107 253 0 32 30 0 1 166 chain 274841 chr9 141213431 + 124552731 124556646 HERVH-int 3825 + 0 3825 14932 161 0 2 310 0 120 11 28 0 13 2 1 13 3 0 7 21 0 19 22 0 41 1 0 31 2 1 49 1 0 291 13 14 153 0 4 190 24 15 19 345 6 129 4 3 318 1 0 4 0 1 1194 8 218 487 chain 41376 chr9 141213431 + 124558598 124559048 LTR7 482 + 0 482 67434 253 0 32 197 chain 4283 chr9 141213431 + 124565848 124565916 L1MA3 4352 - 92 156 203438 23 8 4 37 chain 36489 chr9 141213431 + 124567030 124567616 L1MA3 4352 - 1853 2452 74252 6 5 0 42 9 11 95 6 9 19 5 4 242 3 13 6 1 0 31 13 14 45 17 21 41 chain 2530 chr9 141213431 + 124567808 124567841 L1MA5 2750 + 2543 2575 232742 22 1 0 10 chain 9690 chr9 141213431 + 124612189 124612316 MER2 342 - 80 211 162141 107 1 5 19 chain 53389 chr9 141213431 + 124656541 124657177 L1PA7 6471 + 5828 6459 56766 182 4 1 128 1 0 117 1 0 63 1 2 78 1 0 60 chain 15977 chr9 141213431 + 124669241 124669436 LTR3 431 + 236 431 138421 195 chain 35939 chr9 141213431 + 124671460 124671885 LTR3 431 + 0 431 74969 369 0 6 56 chain 44474 chr9 141213431 + 124673690 124674218 L1PA7 6471 + 5935 6468 63610 303 2 6 32 0 2 31 1 0 159 chain 39309 chr9 141213431 + 124713938 124714415 MER41A 554 - 0 484 70308 80 0 3 62 1 5 334 chain 20575 chr9 141213431 + 124727489 124727856 THE1D 372 - 0 372 125377 56 4 6 17 33 18 81 27 34 75 0 14 7 10 7 57 chain 69702 chr9 141213431 + 124732800 124734423 L1PA7 6471 + 5632 6469 48524 454 783 0 233 1 2 135 4 0 13 chain 8916 chr9 141213431 + 124733264 124733358 SVA_F 1814 + 1088 1182 152402 94 chain 55835 chr9 141213431 + 124733358 124734026 SVA_F 1814 + 764 1472 55228 11 1 0 13 25 57 10 1 0 25 1 2 65 0 15 39 3 0 10 1 0 166 1 0 4 1 0 291 chain 2056 chr9 141213431 + 124733383 124733408 SVA_F 1814 + 868 894 103488 12 0 1 13 chain 18381 chr9 141213431 + 124735828 124736033 L1PA4 6152 + 5947 6152 131836 205 chain 39741 chr9 141213431 + 124762311 124763163 MER41A 554 + 4 546 69698 145 320 0 170 1 2 44 0 4 4 0 1 30 3 7 135 chain 26771 chr9 141213431 + 124789240 124789613 MSTA 426 - 21 419 97082 169 11 9 77 4 11 10 1 21 57 1 0 24 0 1 19 chain 69546 chr9 141213431 + 124806136 124806900 L1PA4 6152 - 0 762 48590 6 2 0 756 chain 31134 chr9 141213431 + 124817525 124817912 MLT2A1 477 - 92 477 82279 74 0 1 140 5 2 168 chain 18145 chr9 141213431 + 124868358 124868666 THE1D 372 - 40 343 132476 132 14 16 71 10 11 11 8 12 5 3 0 19 9 0 26 chain 45120 chr9 141213431 + 124875169 124875717 MER41A 554 - 0 554 62911 73 7 12 41 0 1 427 chain 28587 chr9 141213431 + 124879510 124879878 THE1C 375 - 0 375 90799 186 1 0 11 7 14 139 0 1 24 chain 2241 chr9 141213431 + 124904897 124905018 MIRb 242 + 91 207 236091 11 13 11 4 1 0 14 55 53 23 chain 12744 chr9 141213431 + 124933120 124933265 L1PA7 6471 + 6324 6469 149277 145 chain 19301 chr9 141213431 + 124934229 124934539 AluJr4 308 - 0 308 129239 119 10 3 65 7 0 9 1 2 48 18 29 33 chain 3209 chr9 141213431 + 124938682 124938720 MER103C 291 + 127 165 220758 38 chain 15784 chr9 141213431 + 124962739 124962918 MER107 203 + 24 203 139006 179 chain 22321 chr9 141213431 + 125097705 125097992 AluSp 311 + 4 293 118817 254 0 1 7 3 4 23 chain 2998 chr9 141213431 + 125110365 125110405 MIR3 191 - 81 121 225049 40 chain 106760 chr9 141213431 + 125167511 125168997 LTR12C 1709 - 0 1709 35044 84 14 13 284 50 51 49 42 13 55 0 207 116 1 0 80 0 1 285 8 11 81 0 43 39 9 12 8 4 0 277 chain 546996 chr9 141213431 + 125170912 125177052 L1PA4 6152 - 1 6152 1832 504 0 6 3439 0 2 956 1 0 85 0 3 322 17 0 108 1 0 150 1 0 47 0 20 189 6 5 186 0 1 128 chain 26558 chr9 141213431 + 125196100 125196465 THE1A 353 + 0 353 97814 107 7 6 17 13 1 175 0 1 46 chain 119697 chr9 141213431 + 125196465 125198034 THE1A-int 1579 + 0 1574 31148 232 0 1 77 12 0 128 0 2 286 1 10 92 9 10 251 14 13 11 15 19 269 0 1 172 chain 26107 chr9 141213431 + 125198064 125198415 THE1A 353 + 0 353 99587 104 17 16 32 0 1 153 0 1 5 0 1 40 chain 31391 chr9 141213431 + 125200794 125201244 MLT2A1 477 - 0 475 81837 43 17 49 71 0 2 101 28 22 19 5 2 166 chain 37750 chr9 141213431 + 125209155 125209703 LTR19B 566 + 0 563 72488 163 0 4 39 0 2 134 6 5 18 42 50 75 1 3 70 chain 77075 chr9 141213431 + 125210219 125211203 LTR5B 1012 - 14 1012 44929 328 2 0 6 0 2 173 1 0 110 16 16 215 0 14 82 0 1 51 chain 9285 chr9 141213431 + 125221378 125221537 L1MA5 2750 - 95 267 164141 9 1 0 14 2 1 31 14 30 6 1 0 81 chain 94227 chr9 141213431 + 125222259 125223658 L1PB1 5432 - 153 2223 38287 43 1 0 15 2 1 52 2 0 6 10 6 12 1 0 10 1 0 20 103 781 198 0 1 4 0 1 137 1 0 133 0 7 120 13 7 49 0 1 394 0 1 19 7 6 46 chain 124609 chr9 141213431 + 125231840 125233413 THE1A-int 1579 + 18 1579 29506 443 1 0 397 0 1 21 0 3 136 23 0 443 0 7 32 0 1 77 chain 13543 chr9 141213431 + 125251132 125251338 L1PA7 6471 - 2 204 146199 7 4 0 91 9 10 39 0 7 7 8 0 41 chain 35895 chr9 141213431 + 125251490 125252052 LTR66 600 - 0 600 75018 47 113 154 109 7 4 286 chain 5893 chr9 141213431 + 125251575 125251643 LTR66 600 - 197 265 186244 68 chain 14592 chr9 141213431 + 125252610 125252795 LTR66 600 + 401 600 142621 14 2 0 42 0 16 127 chain 266809 chr9 141213431 + 125254975 125258636 L1PBa 3878 - 177 3813 15346 294 0 4 52 0 1 139 1 0 158 4 5 12 3 2 105 0 2 196 0 4 15 1 0 4 2 0 5 0 6 215 1 4 21 0 11 188 0 1 430 0 1 192 0 1 7 4 8 7 6 0 624 8 7 147 0 7 6 4 0 237 0 1 58 1 0 84 0 1 21 0 1 4 1 0 97 5 6 31 7 5 36 7 5 21 1 0 47 64 19 46 1 0 5 0 1 4 18 11 14 chain 34589 chr9 141213431 + 125258782 125259216 MER4A1 472 - 14 472 76772 9 0 1 202 0 21 23 0 1 25 0 1 175 chain 16757 chr9 141213431 + 125275818 125276055 L1PA8 5853 - 0 234 136242 112 7 6 47 1 0 9 1 0 60 chain 21519 chr9 141213431 + 125276566 125276847 L1PA16 3655 - 67 351 122077 9 3 0 195 0 6 74 chain 28730 chr9 141213431 + 125278579 125278881 AluYa5 310 - 8 310 90205 302 chain 27212 chr9 141213431 + 125292885 125293284 LTR7 482 - 0 482 95552 158 1 12 5 1 0 41 10 42 21 0 3 85 23 61 54 chain 281616 chr9 141213431 + 125294611 125298022 HERVH-int 3825 - 0 3825 14559 458 37 247 31 0 3 5 9 11 708 0 1 217 0 4 419 0 46 257 0 1 638 1 0 21 1 2 54 12 11 35 1 0 4 13 159 160 1 0 289 0 4 40 chain 24813 chr9 141213431 + 125298024 125298427 LTR7 482 - 0 482 105818 132 1 0 26 1 12 5 1 0 15 0 31 36 0 1 44 51 0 16 7 96 68 chain 32773 chr9 141213431 + 125299279 125299754 LTR2B 499 - 0 490 79575 182 13 13 106 1 0 4 0 1 60 5 17 8 0 7 17 14 11 59 1 0 5 chain 30227 chr9 141213431 + 125300135 125300562 MER61E 571 - 164 571 84115 7 0 1 275 37 4 25 0 13 60 1 0 22 chain 169693 chr9 141213431 + 125301403 125303275 L1PA4 6152 - 0 1881 22091 6 0 5 135 1 5 1730 chain 16588 chr9 141213431 + 125310880 125311079 L1PA5 6144 - 6 198 136697 145 7 0 47 chain 7940 chr9 141213431 + 125318206 125318441 L1MC1 2226 - 77 281 171378 10 1 0 10 10 1 6 1 0 18 3 1 18 52 40 40 1 0 11 2 0 14 9 6 29 chain 12101 chr9 141213431 + 125318780 125318956 L1PA8 5853 + 5675 5847 151790 7 1 0 12 2 1 45 2 1 19 2 1 86 chain 164143 chr9 141213431 + 125321698 125324091 L1PA10 4194 - 1693 4019 22788 221 0 2 58 1 2 122 19 12 164 0 1 430 8 10 450 0 1 301 50 40 127 2 3 68 3 1 85 3 1 7 7 0 10 5 3 7 0 3 8 3 2 6 1 0 21 2 0 16 59 32 15 2 0 15 62 52 6 3 0 10 2 0 14 chain 59503 chr9 141213431 + 125331964 125332621 L1PA3long 6157 - 0 661 53108 7 0 1 6 0 3 644 chain 13538 chr9 141213431 + 125340272 125340447 L1PB1 5432 + 4824 4998 146219 20 2 1 153 chain 8790 chr9 141213431 + 125348211 125348323 L1P4 1494 - 289 401 166699 112 chain 545211 chr9 141213431 + 125352423 125358443 L1PA3long 6157 - 0 6153 2047 3976 0 1 851 0 1 119 0 1 111 0 1 192 0 128 623 0 1 148 chain 181231 chr9 141213431 + 125358950 125360999 L1PA5 6144 - 3 2048 20876 6 4 0 139 1 0 1191 1 0 455 0 1 26 0 1 226 chain 3376 chr9 141213431 + 125372625 125372666 MADE1 96 + 1 43 217553 37 0 1 4 chain 23264 chr9 141213431 + 125379017 125379311 L1P4 1494 + 685 980 114364 15 0 1 279 chain 125178 chr9 141213431 + 125379318 125380818 L1P2 5180 - 3070 4574 29327 45 0 1 210 0 4 99 3 4 954 1 0 6 1 0 181 chain 42297 chr9 141213431 + 125381841 125382386 HERVK9-int 4720 - 4091 4641 66273 51 0 4 28 0 4 368 17 16 26 1 0 8 1 0 45 chain 42010 chr9 141213431 + 125383198 125383707 MER9a3 513 - 0 513 66608 75 3 4 234 0 1 179 0 2 18 chain 45454 chr9 141213431 + 125388593 125389111 L1P1 4361 - 1138 1654 62301 64 3 1 451 chain 102096 chr9 141213431 + 125389111 125390227 L1PA3long 6157 + 5045 6157 36239 148 3 0 111 1 0 853 chain 15708 chr9 141213431 + 125394729 125394991 L1PB1 5432 - 17 256 139238 11 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 1 0 12 11 0 16 1 0 43 1 0 15 3 2 44 chain 4104 chr9 141213431 + 125396285 125396331 AluSp 311 + 86 132 205877 46 chain 23256 chr9 141213431 + 125396660 125396995 THE1D 372 - 27 372 114414 64 4 2 87 8 12 9 1 5 28 2 6 132 chain 196131 chr9 141213431 + 125410365 125412684 L1PA7 6471 + 3986 6466 19491 447 15 174 601 1 0 413 0 3 369 0 2 136 2 0 335 chain 4352 chr9 141213431 + 125426404 125426452 MER92B 628 - 580 628 202569 48 chain 40602 chr9 141213431 + 125431517 125432038 LTR10G 522 - 0 522 68436 14 1 0 57 1 3 448 chain 16243 chr9 141213431 + 125440732 125441093 L1PB1 5432 - 5 327 137641 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 28 16 12 2 1 43 7 6 8 1 0 49 7 5 9 5 1 12 5 4 4 1 0 24 6 0 9 chain 3002 chr9 141213431 + 125444353 125444385 MER75B 242 - 152 184 225007 32 chain 4529 chr9 141213431 + 125446070 125446342 L1M2 1805 + 251 509 200461 22 198 184 52 chain 9580 chr9 141213431 + 125455063 125455191 L1PB4 2604 + 2408 2542 162698 77 1 7 50 chain 19054 chr9 141213431 + 125456401 125456621 L1PA4 6152 + 5927 6152 129957 214 0 5 6 chain 9790 chr9 141213431 + 125461139 125461249 L1PA2 6032 + 5920 6030 161649 110 chain 457738 chr9 141213431 + 125471635 125478234 L1PA5 6144 + 0 6143 8480 89 0 749 331 9 0 240 0 5 243 0 8 96 1 0 52 1 2 123 2 44 211 1254 0 87 0 4 23 7 0 1366 0 1 292 0 1 312 0 1 637 4 0 377 1 0 12 0 6 765 0 2 64 chain 104441 chr9 141213431 + 125473049 125474222 SVA_D 2077 + 16 2064 35629 463 0 389 39 0 136 10 0 1 140 0 351 329 2 0 190 chain 9880 chr9 141213431 + 125478852 125478962 L1PA4 6152 - 1 112 161173 46 0 1 64 chain 16059 chr9 141213431 + 125482640 125482810 L1PA3long 6157 - 15 185 138182 170 chain 88279 chr9 141213431 + 125487423 125488765 L1PA7 6471 - 15 1048 40268 325 2 0 436 0 1 78 0 2 73 310 0 118 chain 35206 chr9 141213431 + 125499492 125499926 L1PA6 6164 - 2 449 75914 169 1 3 19 7 18 238 chain 539652 chr9 141213431 + 125521299 125528283 L1PA4 6152 + 0 6146 2868 683 0 3 355 0 1 599 0 8 1176 834 0 684 1 0 51 0 1 121 1 0 2119 12 0 340 3 0 5 chain 6981 chr9 141213431 + 125528811 125528939 L1PB1 5432 + 5308 5427 177598 19 2 0 5 3 2 12 2 0 11 0 1 12 1 0 21 1 0 13 1 0 18 2 0 5 chain 37511 chr9 141213431 + 125537896 125538373 LTR2B 499 + 5 499 72801 7 0 1 59 3 0 39 0 19 178 0 1 8 1 0 182 chain 12713 chr9 141213431 + 125544869 125545027 THE1C 375 + 2 161 149409 120 3 0 20 0 4 15 chain 140291 chr9 141213431 + 125557080 125559060 L1PA7 6471 + 4797 6469 26101 312 5 6 506 1 0 177 304 0 523 0 1 136 5 0 11 chain 21750 chr9 141213431 + 125561928 125562180 AluY 311 + 61 311 121208 62 1 0 10 1 0 178 chain 78513 chr9 141213431 + 125571335 125572224 MER11D 897 + 0 897 44261 281 1 0 343 0 10 149 1 0 114 chain 4704 chr9 141213431 + 125579267 125579390 MIRb 242 - 109 230 198470 26 56 54 41 chain 167732 chr9 141213431 + 125613736 125615675 SVA_D 2077 + 0 2077 22313 25 5 0 866 21 163 6 0 1 196 0 1 4 10 37 6 0 1 78 1 0 4 24 0 13 4 0 676 chain 165701 chr9 141213431 + 125628658 125631014 SVA_D 2077 + 8 2056 22550 11 5 6 529 0 2 4 0 40 303 17 51 76 1 0 6 77 2 11 1 0 4 0 1 97 270 0 35 88 0 122 0 49 699 chain 2917 chr9 141213431 + 125629610 125629687 SVA_D 2077 + 1137 1214 89579 77 chain 15417 chr9 141213431 + 125629800 125630070 SVA_D 2077 + 566 802 74175 4 13 14 15 36 1 202 chain 3164 chr9 141213431 + 125629832 125629867 SVA_D 2077 + 522 557 177096 35 chain 5025 chr9 141213431 + 125630105 125630193 SVA_D 2077 + 837 921 74175 71 2 0 10 2 0 3 chain 20405 chr9 141213431 + 125634880 125635153 AluSz6 309 - 17 298 125878 52 1 10 119 10 9 91 chain 3322 chr9 141213431 + 125647817 125647855 MADE1 96 - 58 96 218527 38 chain 3088 chr9 141213431 + 125649066 125649122 L1MB5 1630 - 757 814 223130 16 12 13 28 chain 11786 chr9 141213431 + 125658315 125659469 MER30 238 - 13 207 153108 21 5 8 76 975 12 77 chain 4578 chr9 141213431 + 125658418 125658471 MER30 238 - 159 212 199892 53 chain 3384 chr9 141213431 + 125659340 125659376 MER30 238 - 69 105 217395 36 chain 26321 chr9 141213431 + 125664204 125664509 AluSp 311 - 8 311 98732 175 2 0 128 chain 19637 chr9 141213431 + 125685198 125685487 AluSc8 310 + 11 309 128293 15 1 6 100 32 36 141 chain 22821 chr9 141213431 + 125694807 125695101 AluSp 311 - 11 302 116487 171 16 13 107 chain 22408 chr9 141213431 + 125718687 125718946 AluY 311 + 40 300 118450 86 0 1 173 chain 16800 chr9 141213431 + 125720768 125720969 L1PA5 6144 + 5931 6132 136116 201 chain 5722 chr9 141213431 + 125730319 125730494 L1MA3 4352 - 0 142 187904 22 6 2 12 69 42 14 2 0 50 chain 2948 chr9 141213431 + 125741541 125741577 L1ME1 1623 - 544 580 226092 36 chain 4124 chr9 141213431 + 125748062 125748111 Tigger4a 237 - 4 53 205609 49 chain 20763 chr9 141213431 + 125750954 125751239 AluSp 311 + 10 300 124740 77 18 24 21 2 0 143 1 2 23 chain 22473 chr9 141213431 + 125764319 125764591 AluSp 311 + 20 295 118141 15 0 1 244 0 2 13 chain 22121 chr9 141213431 + 125777021 125777349 THE1C 375 - 49 375 119696 128 30 25 34 5 9 71 0 1 45 2 0 13 chain 26143 chr9 141213431 + 125813514 125813825 AluSp 311 - 0 311 99429 311 chain 142214 chr9 141213431 + 125818760 125820365 SVA_D 2077 - 0 2076 25777 289 0 2 104 0 3 242 0 49 31 0 1 9 0 2 29 0 1 23 0 396 845 1 0 4 0 9 14 0 9 14 chain 10232 chr9 141213431 + 125868774 125868903 MER85 139 - 0 139 159459 21 1 0 8 0 11 99 chain 22879 chr9 141213431 + 125919791 125920156 THE1C 375 - 0 375 116190 25 1 0 142 17 23 31 8 12 62 3 0 5 10 14 61 chain 39297 chr9 141213431 + 125951312 125951751 L1PA4 6152 + 5715 6152 70333 291 2 0 146 chain 32403 chr9 141213431 + 125951753 125952131 L1PA6 6164 + 5782 6159 80195 211 2 1 165 chain 12823 chr9 141213431 + 125969863 125970026 L1PA7 6471 + 6310 6470 148962 99 0 1 54 4 0 6 chain 10980 chr9 141213431 + 125972829 125972952 AluSg4 309 + 0 127 156274 50 0 4 73 chain 25821 chr9 141213431 + 125976222 125976771 L1PB1 5432 + 4920 5427 100786 120 2 0 12 4 5 38 9 8 11 47 0 18 3 2 13 13 12 11 2 0 50 2 1 16 1 0 41 7 30 16 10 7 15 2 0 24 1 0 17 13 12 5 1 0 18 2 0 5 chain 29981 chr9 141213431 + 125980634 125980947 AluYb8 318 - 5 318 84870 313 chain 45254 chr9 141213431 + 126036588 126037106 L1PA5 6144 - 0 514 62764 494 10 6 14 chain 23514 chr9 141213431 + 126046686 126046962 AluSg 306 + 11 287 113048 276 chain 55680 chr9 141213431 + 126055494 126056096 L1PA3long 6157 + 5555 6157 55321 602 chain 4548 chr9 141213431 + 126071114 126071170 MER44B 551 - 460 516 200243 56 chain 7531 chr9 141213431 + 126094813 126094957 MER63A 208 - 0 153 173969 18 40 49 86 chain 3198 chr9 141213431 + 126134279 126134314 MIRb 242 + 101 136 220952 35 chain 19647 chr9 141213431 + 126154955 126155375 L1PB1 5432 - 5 390 128258 5 2 0 18 29 27 7 1 0 24 2 0 15 1 0 4 2 0 29 36 21 40 1 0 16 2 1 53 2 0 8 8 4 8 1 0 13 1 0 20 1 0 9 1 2 61 chain 7409 chr9 141213431 + 126171596 126171797 Tigger4a 237 + 1 212 174721 26 17 0 11 1 18 25 0 1 38 59 68 24 chain 135362 chr9 141213431 + 126190450 126192550 L1PA11 4918 + 2788 4578 26948 21 0 1 560 1 11 50 0 1 113 0 1 185 0 1 89 1 3 21 4 5 43 0 11 6 318 0 92 2 0 142 1 0 128 0 1 89 0 4 22 14 13 6 2 0 68 2 0 13 1 0 20 4 0 11 3 0 3 2 0 8 16 12 12 1 0 13 2 0 11 chain 14324 chr9 141213431 + 126211975 126212262 L1PB1 5432 + 5160 5421 143479 7 2 0 53 2 1 14 2 1 41 7 6 13 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 2 0 7 chain 5832 chr9 141213431 + 126229384 126229525 MER45B 1037 - 617 778 186849 69 56 76 16 chain 30426 chr9 141213431 + 126263876 126264313 MLT2A1 477 + 0 477 83643 140 0 1 27 1 5 75 26 25 112 4 0 12 3 39 31 0 4 6 chain 3337 chr9 141213431 + 126264474 126264517 MLT2A2 560 + 519 560 218294 36 2 0 5 chain 75618 chr9 141213431 + 126349228 126350109 MER11D 897 - 0 895 45703 298 27 21 291 1 0 67 0 21 197 chain 33689 chr9 141213431 + 126457103 126457817 MLT2A1 477 + 0 477 78109 140 0 1 27 1 5 32 4 0 47 1 0 147 259 21 26 1 2 29 chain 13230 chr9 141213431 + 126459686 126459945 L1PB1 5432 - 8 244 147356 4 1 0 16 2 1 12 1 0 21 1 0 23 3 1 14 1 0 4 3 1 15 17 9 7 3 0 15 1 0 44 1 0 16 3 2 31 chain 17400 chr9 141213431 + 126481119 126481420 THE1B 368 + 0 306 134511 102 14 15 60 23 16 7 1 0 14 0 4 6 11 19 63 chain 123433 chr9 141213431 + 126484158 126485736 THE1B-int 1605 + 0 1605 29902 432 12 37 58 1 0 39 0 3 388 1 0 51 0 1 112 21 20 453 1 2 9 chain 209430 chr9 141213431 + 126491050 126493545 L1PA7 6471 + 3963 6468 18532 280 3 4 80 0 4 69 1 0 15 0 1 222 0 3 209 0 1 408 0 1 339 0 4 19 2 0 515 2 1 138 0 2 31 1 0 150 2 0 9 chain 23904 chr9 141213431 + 126495282 126495559 AluSp 311 - 34 311 110888 277 chain 24089 chr9 141213431 + 126566296 126566645 THE1B 368 + 7 356 109805 76 26 27 62 2 1 119 1 0 50 0 1 13 chain 24292 chr9 141213431 + 126618042 126618321 AluSp 311 + 8 287 108690 279 chain 549820 chr9 141213431 + 126665649 126671639 L1PA2 6032 + 12 6032 1472 821 0 4 436 0 9 155 0 2 447 1 2 2157 0 13 1960 0 1 13 chain 4079 chr9 141213431 + 126686190 126686373 L1MB7 1623 + 1319 1487 206198 4 1 0 13 40 48 27 44 26 14 6 3 26 1 0 7 chain 27279 chr9 141213431 + 126698913 126699249 THE1B 368 - 20 368 95342 146 2 0 33 1 0 110 0 15 44 chain 4177 chr9 141213431 + 126702174 126702221 MADE1 96 + 48 95 204874 47 chain 38119 chr9 141213431 + 126706823 126707260 L1PA5 6144 + 5703 6140 71957 437 chain 3312 chr9 141213431 + 126709570 126709653 MIR 256 - 64 148 218734 23 30 29 5 0 2 25 chain 6812 chr9 141213431 + 126785488 126785593 MER30 238 - 0 102 178858 48 15 12 42 chain 5017 chr9 141213431 + 126813753 126813813 LSU-rRNA_Hsa 377 - 12 72 194964 60 chain 24683 chr9 141213431 + 126836528 126836823 AluSp 311 - 6 302 106530 173 2 0 38 0 3 82 chain 7512 chr9 141213431 + 126851865 126851955 MER5B 177 + 87 177 174080 90 chain 3834 chr9 141213431 + 126882787 126882830 MADE1 96 - 53 96 209857 43 chain 15277 chr9 141213431 + 126885733 126886046 THE1C 375 + 0 375 140549 79 109 170 29 0 1 96 chain 33627 chr9 141213431 + 126903378 126903853 MER41B 635 + 15 522 78204 79 27 60 307 8 7 54 chain 31121 chr9 141213431 + 126905307 126905730 LTR7B 505 + 0 495 82302 105 0 10 60 0 38 12 1 2 6 0 23 21 1 3 85 1 0 76 14 13 41 chain 31003 chr9 141213431 + 126905860 126906285 LTR7B 505 + 0 497 82505 105 0 10 60 0 38 12 3 27 26 0 2 85 1 0 30 0 1 11 1 0 34 14 13 43 chain 5700 chr9 141213431 + 127009606 127009682 MER49 923 - 678 753 188110 48 1 0 27 chain 3958 chr9 141213431 + 127066722 127066769 MIRb 242 + 94 142 208003 36 0 1 11 chain 23718 chr9 141213431 + 127199799 127200089 AluSc5 308 + 6 296 111948 251 1 0 9 0 1 29 chain 24904 chr9 141213431 + 127272425 127272731 AluY 311 + 2 311 105315 129 6 8 120 0 1 51 chain 20749 chr9 141213431 + 127297127 127297413 AluY 311 + 0 293 124789 41 24 0 10 0 30 45 0 1 166 chain 3238 chr9 141213431 + 127301588 127301738 MER58A 224 + 69 214 220287 17 96 90 20 0 1 17 chain 61354 chr9 141213431 + 127347848 127348724 Tigger1 2417 + 873 1782 52171 56 3 14 76 1 0 17 0 3 24 4 12 227 11 14 123 1 0 147 10 12 74 0 7 18 26 27 58 chain 25176 chr9 141213431 + 127351452 127351729 AluYk4 311 + 9 286 103871 277 chain 23422 chr9 141213431 + 127363280 127363558 AluSx 319 + 8 286 113523 278 chain 108691 chr9 141213431 + 127371833 127373184 L1PA10 4194 - 44 1402 34515 34 3 0 381 0 2 53 0 5 27 0 2 33 0 1 24 1 2 108 2 0 139 0 1 503 0 3 35 3 0 5 chain 27923 chr9 141213431 + 127395401 127395704 AluYg6 310 + 0 303 93269 303 chain 11455 chr9 141213431 + 127408837 127409046 MER30 238 - 0 238 154485 73 5 0 12 23 39 8 3 0 10 0 3 55 2 20 18 chain 3917 chr9 141213431 + 127460504 127460547 U5 65 + 1 44 208582 43 chain 3148 chr9 141213431 + 127515440 127515477 MER113 458 + 69 106 221984 37 chain 29523 chr9 141213431 + 127592443 127592761 AluYb8 318 - 0 318 86552 318 chain 126195 chr9 141213431 + 127600030 127601565 LTR12C 1709 - 0 1709 29036 404 3 4 73 0 4 106 9 6 116 0 159 80 0 2 236 1 0 198 7 30 24 13 3 68 1 0 196 chain 24329 chr9 141213431 + 127608486 127608770 AluSg7 307 - 13 297 108498 284 chain 6360 chr9 141213431 + 127610290 127610365 L1MA4 2864 - 665 739 182311 9 1 0 65 chain 21508 chr9 141213431 + 127612832 127613081 AluSg 306 + 5 254 122113 249 chain 19845 chr9 141213431 + 127616886 127617131 AluSg7 307 - 41 296 127667 19 4 15 100 1 0 121 chain 7203 chr9 141213431 + 127617150 127617422 L1MB2 1706 - 16 281 176048 23 167 160 82 chain 23533 chr9 141213431 + 127628722 127629015 AluSp 311 + 4 298 112941 185 0 3 97 2 0 9 chain 25133 chr9 141213431 + 127634591 127634886 AluY 311 + 0 293 104103 43 1 0 90 1 0 160 chain 5864 chr9 141213431 + 127649759 127649828 U4 144 - 76 144 186550 60 1 0 8 chain 6939 chr9 141213431 + 127665828 127665949 BC200 147 + 27 141 177895 12 9 15 68 13 0 19 chain 5496 chr9 141213431 + 127665972 127666045 L1MB3 1562 + 1195 1267 190079 8 1 0 64 chain 20613 chr9 141213431 + 127675212 127675567 THE1D 372 - 0 372 125251 33 0 1 65 0 1 48 58 62 49 16 15 66 0 12 20 chain 24717 chr9 141213431 + 127687091 127687376 AluY 311 + 15 300 106344 285 chain 3702 chr9 141213431 + 127721362 127721401 L1PA4 6152 - 182 221 211904 39 chain 13550 chr9 141213431 + 127721401 127721546 L1PA4 6152 + 6006 6151 146166 145 chain 47970 chr9 141213431 + 127721833 127722384 L1PA5 6144 - 14 568 60507 27 0 4 110 1 0 413 chain 3493 chr9 141213431 + 127725377 127725419 Tigger2 2703 - 165 207 215487 42 chain 22821 chr9 141213431 + 127728371 127728623 L1PA5 6144 - 12 265 116488 32 0 1 220 chain 2553 chr9 141213431 + 127734792 127734845 MER33 330 + 226 278 232448 29 12 11 12 chain 24756 chr9 141213431 + 127764750 127765062 AluSp 311 - 7 311 106134 11 6 0 169 2 0 124 chain 25653 chr9 141213431 + 127767059 127767366 AluSp 311 - 4 311 101478 307 chain 556524 chr9 141213431 + 127772325 127778468 L1PA3long 6157 + 1 6157 669 120 4 7 579 0 1 35 1 0 63 0 1 762 0 1 187 0 1 676 0 3 1132 0 1 737 1 0 1189 0 3 650 0 1 7 chain 22084 chr9 141213431 + 127814575 127814910 AluSq10 312 + 8 291 119875 170 20 5 16 38 0 31 1 2 59 chain 10891 chr9 141213431 + 127828532 127828715 Tigger3 1187 + 738 920 156621 11 5 4 43 12 11 93 8 9 11 chain 12966 chr9 141213431 + 127835682 127835947 L1MB3 1562 - 508 782 148368 70 35 36 22 44 52 94 chain 24491 chr9 141213431 + 127843086 127843412 THE1B 368 + 0 340 107591 44 0 15 113 1 0 121 1 0 22 6 7 18 chain 32956 chr9 141213431 + 127843440 127843841 THE1B-int 1605 + 0 416 79286 25 2 0 5 0 16 310 0 1 59 chain 5839 chr9 141213431 + 127845818 127845889 THE1B 368 + 222 293 186776 71 chain 3644 chr9 141213431 + 127845890 127845930 THE1B 368 + 293 333 212909 40 chain 19103 chr9 141213431 + 127858361 127858695 THE1B 368 - 0 368 129807 16 9 8 25 33 54 93 7 6 35 3 0 7 2 5 55 5 20 44 chain 4901 chr9 141213431 + 127867714 127867770 U2 167 + 0 56 196260 56 chain 131986 chr9 141213431 + 127870076 127871633 SVA_C 1631 + 8 1611 27636 9 3 0 8 6 0 551 40 0 274 19 20 8 0 1 18 12 109 74 4 0 531 chain 26776 chr9 141213431 + 127880844 127881269 L1PA8 5853 - 21 437 97061 72 1 0 19 76 71 62 2 0 44 1 0 148 chain 12971 chr9 141213431 + 127919260 127919418 L1PA5 6144 - 3 158 148344 13 3 0 142 chain 23553 chr9 141213431 + 127922650 127922997 THE1B 368 + 0 368 112834 44 0 15 72 5 9 32 8 8 10 4 2 58 0 1 36 2 1 18 0 4 58 chain 52037 chr9 141213431 + 127943634 127944352 L1PA8 5853 - 7 776 57600 86 1 0 7 5 22 27 12 11 14 5 4 17 6 5 45 2 0 46 1 0 26 0 33 400 0 8 18 chain 5900 chr9 141213431 + 127953832 127953909 MER21A 919 - 343 414 186191 21 6 0 50 chain 28884 chr9 141213431 + 127962066 127962377 AluYb8 318 + 0 309 89523 132 2 0 177 chain 24689 chr9 141213431 + 127973229 127973529 AluY 311 + 0 296 106500 20 4 2 111 2 0 163 chain 8788 chr9 141213431 + 127987268 127987372 FLAM_A 137 + 17 121 166722 104 chain 27490 chr9 141213431 + 127994173 127994477 AluSp 311 - 7 311 94678 304 chain 23502 chr9 141213431 + 127995082 127995371 AluSc 308 + 8 295 113121 204 3 1 82 chain 21691 chr9 141213431 + 128025483 128025750 AluSc 308 + 37 303 121425 26 2 1 239 chain 24309 chr9 141213431 + 128034308 128034600 AluSg4 309 - 17 309 108608 292 chain 8403 chr9 141213431 + 128066201 128066305 U6 107 - 3 107 168833 104 chain 54700 chr9 141213431 + 128078489 128079208 L1PA7 6471 - 5 687 55903 78 0 26 52 2 1 149 60 0 201 2 0 175 chain 3710 chr9 141213431 + 128088134 128088182 Tigger7 736 + 67 119 211803 31 0 4 17 chain 82631 chr9 141213431 + 128090473 128091391 SVA_F 1814 - 0 1804 42492 10 2 0 627 3 0 4 0 49 44 0 841 53 0 1 175 chain 11848 chr9 141213431 + 128105402 128105592 MER30 238 + 40 238 152837 30 9 13 20 12 19 77 3 0 39 chain 22256 chr9 141213431 + 128113283 128113626 THE1B 368 - 0 367 119098 64 0 1 32 0 1 27 35 45 26 1 0 4 1 0 66 1 0 43 0 15 43 chain 59850 chr9 141213431 + 128113642 128115814 THE1B-int 1605 - 15 1605 52902 7 0 2 216 0 2 5 2 0 143 1395 799 192 0 10 198 2 4 12 chain 7589 chr9 141213431 + 128143592 128144237 MLT1C 463 - 34 385 173612 37 522 227 41 1 2 44 chain 12856 chr9 141213431 + 128148477 128148651 MSTD 398 - 6 178 148811 155 7 5 12 chain 24709 chr9 141213431 + 128154972 128155256 AluSp 311 + 11 295 106387 284 chain 9534 chr9 141213431 + 128187454 128187617 MER53 195 - 14 191 162915 56 9 24 18 3 0 7 6 8 64 chain 2833 chr9 141213431 + 128189192 128189224 MIRb 242 - 111 143 228169 32 chain 19735 chr9 141213431 + 128193514 128193792 AluJb 308 + 30 295 127995 80 1 0 14 14 5 161 3 0 5 chain 147473 chr9 141213431 + 128220496 128222152 SVA_D 2077 - 0 2077 24968 639 1 0 31 0 32 60 0 1 22 0 396 860 3 1 16 5 0 19 chain 4385 chr9 141213431 + 128261363 128261416 MIR 256 - 152 205 202135 53 chain 21117 chr9 141213431 + 128289338 128289642 AluSg7 307 - 11 305 123502 8 5 0 9 8 6 56 16 13 202 chain 40999 chr9 141213431 + 128329489 128330011 MER41A 554 + 18 554 67906 22 0 1 59 1 10 54 0 2 174 2 3 96 1 2 113 chain 43595 chr9 141213431 + 128334181 128334820 PABL_A-int 1935 + 1206 1911 64691 263 1 86 51 1 0 85 17 18 18 1 0 36 3 1 74 1 0 17 1 0 8 23 16 8 1 0 7 9 3 14 chain 38816 chr9 141213431 + 128335405 128335940 MER41A 554 + 13 554 70994 174 0 10 7 23 13 178 11 15 105 0 2 37 chain 158363 chr9 141213431 + 128338758 128340712 SVA_D 2077 + 12 2065 23548 41 17 0 671 0 3 34 3 0 147 1 0 10 2 0 29 138 0 46 1 0 41 5 37 114 0 225 415 0 1 239 chain 10571 chr9 141213431 + 128339713 128339851 SVA_D 2077 + 1212 1350 78952 138 chain 55915 chr9 141213431 + 128342307 128342972 L1PA6 6164 + 5497 6162 55173 519 1 2 129 1 0 15 chain 161987 chr9 141213431 + 128385117 128387544 SVA_F 1814 + 14 1814 23067 816 629 0 25 1 0 25 0 1 65 2 17 38 1 0 9 1 0 160 4 0 17 1 0 611 0 1 4 7 0 11 chain 36493 chr9 141213431 + 128385946 128386414 SVA_F 1814 + 843 1274 74248 37 2 0 56 0 1 10 1 15 129 50 0 183 chain 2281 chr9 141213431 + 128386181 128386206 SVA_F 1814 + 1267 1291 142601 7 1 0 17 chain 2084 chr9 141213431 + 128386206 128386228 SVA_F 1814 + 925 947 218683 22 chain 4937 chr9 141213431 + 128386498 128386562 SVA_F 1814 + 1006 1070 106943 64 chain 3024 chr9 141213431 + 128420638 128420672 U2 167 + 0 34 224483 34 chain 14088 chr9 141213431 + 128427700 128427878 LTR7B 505 + 256 437 144266 22 0 2 82 1 0 46 0 2 27 chain 3015 chr9 141213431 + 128437538 128437572 U2 167 - 133 167 224720 34 chain 2781 chr9 141213431 + 128452793 128452852 MIR 256 + 117 177 228995 16 17 18 26 chain 22018 chr9 141213431 + 128497173 128497562 MSTA 426 - 0 426 120146 109 9 17 19 41 63 59 10 16 31 13 14 98 chain 7534 chr9 141213431 + 128497562 128497658 L1MB3 1562 + 1140 1235 173950 61 1 0 34 chain 24985 chr9 141213431 + 128540543 128540835 AluSg7 307 - 15 307 104887 292 chain 156676 chr9 141213431 + 128541542 128543842 SVA_D 2077 - 4 2077 23775 216 1 0 467 0 50 210 0 100 81 501 5 26 2 0 10 2 0 149 0 116 603 0 11 13 1 0 6 1 0 6 1 0 4 chain 6079 chr9 141213431 + 128542936 128543018 SVA_D 2077 - 693 818 155162 39 1 0 24 15 59 3 chain 3315 chr9 141213431 + 128570623 128570665 MER82 654 + 1 43 218676 42 chain 19910 chr9 141213431 + 128573604 128573960 THE1C 375 + 0 375 127441 15 2 0 32 0 6 6 26 27 27 0 1 60 5 8 11 39 49 133 chain 7992 chr9 141213431 + 128742764 128742860 THE1C 375 - 279 375 171110 96 chain 3192 chr9 141213431 + 128807704 128807768 MLT1H 522 - 0 66 221073 13 13 14 32 0 1 6 chain 28530 chr9 141213431 + 128836728 128837126 LTR7 482 - 0 482 91051 49 12 14 35 0 2 58 0 10 19 0 31 39 0 1 109 9 47 68 chain 332278 chr9 141213431 + 128838386 128842294 HERVH-int 3825 - 0 3825 12119 1523 0 1 1309 1 0 6 0 1 206 1 0 59 83 0 23 7 6 35 0 37 15 28 0 24 1 0 10 1 0 38 5 0 460 1 0 72 chain 28200 chr9 141213431 + 128842296 128842693 LTR7 482 - 0 482 92308 49 12 14 95 0 10 9 0 4 6 0 31 15 1 0 24 0 1 109 8 46 69 chain 11046 chr9 141213431 + 128887419 128887548 MER85 139 + 0 139 156033 90 0 10 39 chain 5250 chr9 141213431 + 128895204 128895265 MLT1J 494 - 329 390 192514 61 chain 3238 chr9 141213431 + 128898027 128898061 HERVL-int 5654 + 5620 5654 220289 34 chain 33328 chr9 141213431 + 128898061 128898496 MLT2A1 477 + 0 477 78691 147 0 5 16 5 2 9 0 1 24 0 1 178 0 2 16 3 39 37 chain 23512 chr9 141213431 + 128934865 128935127 AluSc 308 - 46 308 113061 262 chain 3249 chr9 141213431 + 128964961 128964998 MER45C 884 + 128 165 220034 37 chain 7002 chr9 141213431 + 128975878 128975964 MLT1E3 631 - 0 86 177453 86 chain 28892 chr9 141213431 + 129005049 129005354 AluYk12 309 - 4 309 89491 305 chain 26320 chr9 141213431 + 129012407 129012752 THE1B 368 - 0 361 98738 49 5 13 137 1 0 61 0 1 22 2 10 68 chain 26359 chr9 141213431 + 129014450 129014796 THE1B 368 + 0 368 98576 44 0 15 110 4 3 134 5 13 49 chain 3313 chr9 141213431 + 129062173 129062214 MIRb 242 + 66 107 218715 41 chain 5750 chr9 141213431 + 129074982 129075059 MLT1J2 417 - 271 349 187639 21 1 0 15 0 1 14 0 1 26 chain 19695 chr9 141213431 + 129085120 129085411 L1PA8 5853 + 5568 5853 128120 40 2 0 70 2 1 13 1 0 36 16 15 17 1 0 93 chain 3656 chr9 141213431 + 129131410 129131515 MER53 195 + 11 179 212645 26 48 111 31 chain 20105 chr9 141213431 + 129239744 129240037 THE1B 368 - 58 352 126807 6 2 0 62 1 0 12 8 7 9 0 4 10 0 1 5 0 2 8 1 0 15 1 0 153 chain 25760 chr9 141213431 + 129275126 129275423 AluSp 311 + 11 309 101040 139 0 1 158 chain 3073 chr9 141213431 + 129278230 129278266 MIRc 230 + 96 132 223487 36 chain 3699 chr9 141213431 + 129292792 129292849 MER53 195 + 0 57 211945 35 3 2 4 0 1 15 chain 13764 chr9 141213431 + 129308850 129309047 THE1B 368 - 0 211 145388 61 3 1 6 0 21 79 4 0 31 1 0 12 chain 26148 chr9 141213431 + 129361374 129361762 THE1D 372 - 0 372 99411 179 1 0 6 0 4 108 36 17 58 chain 10132 chr9 141213431 + 129363328 129363450 L1MB3 1562 + 791 912 159937 40 1 0 81 chain 7937 chr9 141213431 + 129409390 129409483 FAM 185 + 56 149 171403 93 chain 22356 chr9 141213431 + 129425434 129425730 AluSz 310 + 11 310 118680 120 1 0 8 9 12 50 0 1 108 chain 25698 chr9 141213431 + 129460143 129460445 AluSp 311 - 1 303 101293 302 chain 83463 chr9 141213431 + 129478790 129479806 LTR5A 1029 + 0 1029 42131 134 0 13 443 0 2 5 18 16 258 6 0 8 1 7 143 chain 4828 chr9 141213431 + 129480526 129480606 MADE1 96 + 0 96 197037 23 8 24 49 chain 20067 chr9 141213431 + 129516284 129516549 AluSp 311 + 47 287 126929 9 0 1 75 1 0 90 25 0 65 chain 23346 chr9 141213431 + 129543149 129543441 AluSg 306 + 2 303 113946 92 6 15 194 chain 25837 chr9 141213431 + 129547123 129547457 THE1A 353 + 0 341 100717 110 1 0 18 0 6 6 2 4 197 chain 24009 chr9 141213431 + 129572121 129572413 AluSg7 307 - 16 307 110277 159 1 0 132 chain 24051 chr9 141213431 + 129607199 129607482 AluSp 311 + 18 299 110033 114 2 0 167 chain 19325 chr9 141213431 + 129661571 129661790 AluSc 308 + 72 291 129165 219 chain 10408 chr9 141213431 + 129674288 129674429 L1MB8 1703 - 616 758 158649 98 9 10 34 chain 153319 chr9 141213431 + 129711105 129712785 L1PA3long 6157 - 8 1692 24184 180 0 1 92 0 3 1408 chain 145381 chr9 141213431 + 129712785 129714408 L1PA3long 6157 + 2834 4458 25244 336 3 1 878 2 1 303 0 4 101 chain 3124 chr9 141213431 + 129715863 129715898 MIRc 230 + 97 132 222464 35 chain 25451 chr9 141213431 + 129731047 129731344 AluSp 311 + 2 299 102450 297 chain 4949 chr9 141213431 + 129731712 129731771 MER33 330 - 266 325 195715 59 chain 495232 chr9 141213431 + 129755885 129761441 L1PA4 6152 + 38 6136 7112 58 0 525 114 0 1 216 9 8 73 2 1 113 0 1 88 1 0 1973 1 0 93 0 1 899 0 2 69 0 4 75 0 8 918 0 4 270 1 0 444 0 1 139 chain 60794 chr9 141213431 + 129764724 129765384 L1PA2 6032 - 0 660 52428 660 chain 40884 chr9 141213431 + 129765384 129765825 L1PA2 6032 + 4920 5361 68045 441 chain 4553 chr9 141213431 + 129781405 129781542 MER105 203 + 22 203 200189 17 13 16 19 26 66 38 12 13 12 chain 33219 chr9 141213431 + 129788288 129788735 MLT2A1 477 - 0 475 78852 6 0 4 27 3 37 10 3 0 8 6 0 215 6 3 148 0 2 15 chain 33479 chr9 141213431 + 129890165 129890575 L1PA7 6471 - 10 448 78442 153 0 27 149 0 1 108 chain 28352 chr9 141213431 + 129968550 129968929 THE1C 375 - 0 375 91755 26 1 0 118 24 24 82 3 0 125 chain 23135 chr9 141213431 + 129992657 129992953 AluSp 311 + 1 301 114969 81 1 6 51 1 2 142 2 0 18 chain 3172 chr9 141213431 + 130002846 130002885 MER33 330 - 40 79 221516 39 chain 20707 chr9 141213431 + 130047445 130047696 AluSp 311 + 10 276 124937 14 0 7 136 0 8 101 chain 4643 chr9 141213431 + 130057736 130057848 MER21C 908 - 80 179 199147 8 0 21 13 35 3 16 1 0 13 1 0 25 chain 32925 chr9 141213431 + 130058045 130058520 MER1A 529 - 5 485 79331 45 1 0 14 11 12 161 7 7 149 9 10 29 1 5 48 chain 23549 chr9 141213431 + 130101590 130101887 THE1A 353 - 57 353 112856 186 1 0 110 chain 21477 chr9 141213431 + 130140600 130140884 AluSp 311 + 16 300 122229 32 4 5 79 7 6 162 chain 33974 chr9 141213431 + 130173024 130173510 MER41A 554 - 68 554 77655 58 9 10 6 0 4 180 0 1 38 7 6 97 12 7 79 chain 22960 chr9 141213431 + 130175941 130176226 HERVH-int 3825 + 0 291 115808 105 0 4 59 0 2 121 chain 26267 chr9 141213431 + 130220384 130220697 AluYb8 318 + 7 318 98947 56 2 0 255 chain 14759 chr9 141213431 + 130274274 130274490 MER4A1 472 + 0 218 142072 15 21 23 180 chain 41098 chr9 141213431 + 130275630 130276166 MER41A 554 + 0 546 67767 122 0 3 58 7 6 39 0 1 86 3 0 45 0 1 37 0 4 59 1 6 79 chain 22903 chr9 141213431 + 130293486 130293797 AluSz 310 + 11 306 116091 9 4 0 113 1 0 163 11 0 10 chain 25060 chr9 141213431 + 130309836 130310142 AluSp 311 + 2 303 104506 293 5 0 8 chain 20722 chr9 141213431 + 130351887 130352133 AluSc 308 + 15 265 124887 34 0 4 212 chain 5595 chr9 141213431 + 130363194 130363265 MIR 256 + 116 187 189129 71 chain 7579 chr9 141213431 + 130378699 130379169 MLT1F 544 - 2 502 173672 75 359 389 36 chain 22327 chr9 141213431 + 130399392 130399682 AluSp 311 - 23 311 118788 135 16 16 5 2 0 132 chain 31299 chr9 141213431 + 130457649 130458077 LTR3B 427 + 0 427 81994 42 1 4 118 0 1 140 5 2 21 13 7 14 1 0 18 0 5 55 chain 6881 chr9 141213431 + 130499796 130499882 MER83 447 + 0 86 178340 86 chain 23132 chr9 141213431 + 130518919 130519197 AluYc3 301 - 8 288 114988 166 0 1 11 1 2 100 chain 12250 chr9 141213431 + 130522729 130522894 L1PA7 6471 + 6316 6469 151204 120 7 0 20 5 0 13 chain 5991 chr9 141213431 + 130553940 130554044 MLT1C 463 - 304 406 185323 11 0 4 4 1 0 16 7 1 15 1 2 49 chain 6354 chr9 141213431 + 130596239 130596312 HY3 101 - 9 82 182346 73 chain 39811 chr9 141213431 + 130611135 130611667 LTR10A 586 + 23 586 69615 36 0 8 7 0 1 26 4 25 15 1 0 61 5 6 73 1 2 303 chain 24876 chr9 141213431 + 130654160 130654458 AluSp 311 + 12 310 105476 298 chain 26808 chr9 141213431 + 130662553 130662868 AluSp 311 + 0 311 96945 14 4 0 297 chain 25291 chr9 141213431 + 130721767 130722134 THE1D 372 + 0 372 103269 120 6 8 38 24 27 179 chain 5059 chr9 141213431 + 130751012 130751088 MER3 215 + 72 138 194541 59 10 0 7 chain 21235 chr9 141213431 + 130758177 130758429 AluY 311 + 11 260 123075 114 5 1 110 0 1 23 chain 25045 chr9 141213431 + 130758722 130759023 AluY 311 + 5 305 104567 121 1 0 179 chain 4340 chr9 141213431 + 130769219 130769271 U6 107 + 6 57 202712 24 1 0 27 chain 4457 chr9 141213431 + 130794246 130794296 MSTB 430 + 75 125 201263 50 chain 43470 chr9 141213431 + 130802909 130803416 L1PA3long 6157 - 0 491 64847 5 0 2 327 19 0 150 0 1 6 chain 25648 chr9 141213431 + 130824259 130824568 AluSc 308 - 6 308 101507 7 2 0 6 5 0 289 chain 28435 chr9 141213431 + 130826357 130826654 AluYd8 298 - 1 298 91445 297 chain 7594 chr9 141213431 + 130846374 130846539 MER4D 903 + 17 188 173589 12 1 0 19 31 33 34 0 3 21 13 15 34 chain 88369 chr9 141213431 + 130891745 130892754 LTR13 1007 - 0 1007 40236 87 2 4 382 0 4 99 8 0 431 chain 24389 chr9 141213431 + 130902811 130903079 HERVE-int 4064 - 1347 1616 108145 82 0 1 186 chain 34678 chr9 141213431 + 130917385 130918160 LTR27 711 + 8 490 76656 8 3 0 125 0 1 66 290 0 58 2 0 37 0 1 38 2 0 7 7 9 132 chain 24824 chr9 141213431 + 130941961 130942240 AluSp 311 - 22 301 105746 279 chain 88554 chr9 141213431 + 130943614 130944633 LTR13 1007 + 0 1007 40164 426 14 0 498 0 2 81 chain 3002 chr9 141213431 + 130969961 130969993 MIR 256 + 117 149 224983 32 chain 5364 chr9 141213431 + 131021117 131021178 7SLRNA 320 - 165 226 191388 61 chain 82232 chr9 141213431 + 131041498 131042461 LTR13A 966 - 0 966 42665 195 1 0 691 0 4 76 chain 20948 chr9 141213431 + 131052919 131053197 AluSc 308 + 6 285 124115 42 16 17 220 chain 29340 chr9 141213431 + 131057195 131057510 AluYb8 318 + 0 315 87343 315 chain 24154 chr9 141213431 + 131082615 131082910 AluSp 311 - 14 311 109459 20 0 2 275 chain 3547 chr9 141213431 + 131102408 131102445 tRNA-Arg-AGA 37 - 0 37 214601 37 chain 28730 chr9 141213431 + 131116019 131116321 AluYa5 310 - 8 310 90204 302 chain 24052 chr9 141213431 + 131125419 131125703 AluSp 311 - 24 311 110030 188 0 3 96 chain 23140 chr9 141213431 + 131175557 131175834 AluSg4 309 + 22 299 114939 277 chain 3807 chr9 141213431 + 131210596 131210670 MLT1C 463 + 0 73 210274 17 19 18 38 chain 26892 chr9 141213431 + 131226959 131227262 AluYa5 310 - 0 299 96658 184 2 0 62 2 0 53 chain 81275 chr9 141213431 + 131281166 131282224 MER11C 1089 + 0 1059 43053 247 0 9 57 0 4 204 49 51 19 6 4 95 0 4 5 1 0 38 0 1 54 16 0 267 chain 25168 chr9 141213431 + 131288627 131288936 AluSp 311 - 4 310 103916 175 3 0 131 chain 3775 chr9 141213431 + 131306195 131306235 U7 62 + 1 41 210730 40 chain 24284 chr9 141213431 + 131360229 131360516 AluSp 311 - 14 301 108743 287 chain 25573 chr9 141213431 + 131384572 131384877 AluSp 311 - 6 311 101857 305 chain 22699 chr9 141213431 + 131421508 131421790 AluY 311 + 0 299 117079 20 3 19 84 4 5 171 chain 28066 chr9 141213431 + 131496126 131496424 AluYg6 310 + 0 298 92766 298 chain 4292 chr9 141213431 + 131523103 131523156 MIRb 242 + 87 140 203328 53 chain 144597 chr9 141213431 + 131541790 131543442 SVA_D 2077 + 28 2076 25382 616 0 1 79 0 3 31 8 5 157 1 38 34 0 1 4 0 1 5 0 51 34 1 3 7 0 303 675 chain 25756 chr9 141213431 + 131558531 131558829 AluSp 311 - 15 311 101056 176 2 0 120 chain 4645 chr9 141213431 + 131576879 131576930 L1MA7 2200 + 1237 1288 199117 51 chain 16179 chr9 141213431 + 131601716 131601917 AluY 311 + 95 296 137819 37 0 1 5 5 6 27 2 0 125 chain 85467 chr9 141213431 + 131612514 131613517 LTR5B 1012 + 0 1012 41356 101 0 2 524 4 5 99 0 2 14 0 2 6 0 1 222 0 1 33 chain 277260 chr9 141213431 + 131613573 131617971 HERVK-int 6823 + 52 6597 14793 22 1 0 26 7 6 16 1 0 11 2 0 169 1 0 4 0 1 148 1 0 186 269 2444 254 0 3 24 0 14 221 0 1 4 1 0 63 1 0 1490 0 1 4 5 4 263 12 129 165 1 0 23 1 0 62 3 1 37 1 0 34 1 0 124 1 0 43 17 13 7 1 0 4 1 0 38 0 2 36 2 0 6 1 0 12 28 22 13 1 0 17 243 154 11 2 0 32 5 0 9 24 18 10 10 4 8 1 0 8 4 2 29 1 0 4 1 0 13 34 25 17 1 0 4 2 1 7 5 0 7 9 4 11 chain 86144 chr9 141213431 + 131618738 131619736 LTR5B 1012 + 8 1012 41099 93 0 2 808 1 3 60 0 2 36 chain 25309 chr9 141213431 + 131623469 131623811 THE1C 375 + 12 355 103178 113 10 7 49 0 1 44 1 4 125 chain 20728 chr9 141213431 + 131653296 131653559 AluSx 319 + 29 292 124866 91 1 0 139 1 2 31 chain 6545 chr9 141213431 + 131657150 131657259 L1MB3 1562 - 10 120 180881 29 2 1 20 4 7 27 1 0 26 chain 24925 chr9 141213431 + 131707497 131707788 AluSp 311 + 10 303 105187 265 0 2 26 chain 23230 chr9 141213431 + 131711628 131711900 AluSp 311 - 29 301 114543 272 chain 24354 chr9 141213431 + 131723902 131724186 AluSp 311 - 14 299 108348 254 0 1 30 chain 25158 chr9 141213431 + 131740575 131740858 AluY 311 + 15 305 103962 117 0 1 143 0 6 23 chain 22287 chr9 141213431 + 131744082 131744367 AluSp 311 + 11 293 118959 27 18 15 240 chain 21700 chr9 141213431 + 131748051 131748317 AluSq2 311 + 20 283 121392 50 4 0 63 0 1 149 chain 11651 chr9 141213431 + 131817013 131817151 L1MB8 1703 - 323 461 153692 138 chain 15213 chr9 141213431 + 131819330 131819529 Tigger2 2703 - 1376 1577 140735 75 0 1 51 1 2 72 chain 25058 chr9 141213431 + 131837290 131837572 AluSp 311 - 16 299 104517 153 0 1 129 chain 19134 chr9 141213431 + 131837959 131838319 THE1B 368 - 0 367 129726 56 14 14 58 53 56 5 0 3 41 29 30 104 chain 43797 chr9 141213431 + 131863559 131864113 LTR14 556 + 0 556 64459 190 6 5 4 0 1 123 3 0 61 8 12 58 0 1 101 chain 9988 chr9 141213431 + 131875237 131875370 MER30 238 - 2 148 160642 107 5 18 21 chain 10080 chr9 141213431 + 132026177 132026409 MER66B 489 - 0 230 160182 22 5 4 58 72 75 42 1 0 23 3 0 6 chain 197165 chr9 141213431 + 132058381 132060723 L1PA7 6471 - 1 2344 19411 117 5 6 39 0 1 664 5 4 18 1 0 671 9 10 813 chain 24555 chr9 141213431 + 132063880 132064166 L1PA4 6152 + 5857 6143 107223 286 chain 37778 chr9 141213431 + 132100323 132101175 MER41C 542 - 0 542 72447 116 340 15 45 7 0 36 0 21 160 1 0 101 0 2 46 chain 5800 chr9 141213431 + 132172813 132172926 HAL1-2a_MD 234 + 0 198 187151 35 0 9 25 24 0 16 0 100 13 chain 3329 chr9 141213431 + 132187502 132187537 MIR 256 - 120 155 218412 35 chain 3195 chr9 141213431 + 132237472 132237709 MLT1J 494 + 104 351 221023 30 184 193 18 0 1 5 chain 6189 chr9 141213431 + 132257318 132257394 MER115 684 + 561 637 183664 76 chain 5622 chr9 141213431 + 132263591 132263706 MIR 256 - 119 235 188849 61 0 16 8 32 17 14 chain 33853 chr9 141213431 + 132317965 132318730 MER41A 554 + 0 541 77851 42 0 1 64 2 0 225 63 8 56 0 3 25 249 78 39 chain 4704 chr9 141213431 + 132336130 132336204 MLT1B 390 + 7 82 198478 12 7 8 55 chain 39310 chr9 141213431 + 132360970 132362109 MER41A 554 - 6 554 70306 82 0 5 31 618 22 218 5 6 106 3 0 16 1 2 20 0 1 39 chain 3384 chr9 141213431 + 132368675 132368714 MIR 256 + 72 111 217380 39 chain 8294 chr9 141213431 + 132424504 132424595 SVA_B 1603 + 1501 1592 169437 91 chain 3312 chr9 141213431 + 132469206 132469245 L1MB8 1703 - 139 178 218737 39 chain 21016 chr9 141213431 + 132504906 132505165 AluSc8 310 + 36 299 123863 95 7 11 157 chain 24942 chr9 141213431 + 132526161 132526456 AluY 311 + 13 302 105094 110 10 4 175 chain 16802 chr9 141213431 + 132527372 132527597 Tigger3b 1229 - 650 886 136112 13 1 2 8 0 9 155 1 2 47 chain 31128 chr9 141213431 + 132548791 132549252 LTR7B 505 + 0 505 82289 95 1 32 37 1 0 44 9 7 18 8 24 73 1 0 89 0 1 17 18 17 20 1 2 29 chain 25022 chr9 141213431 + 132569849 132570140 AluY 311 + 0 298 104670 64 0 5 62 0 2 165 chain 9326 chr9 141213431 + 132603393 132603669 MLT1B 390 - 18 301 163913 92 131 138 18 7 7 28 chain 25251 chr9 141213431 + 132622329 132622625 AluY 311 + 2 299 103471 130 0 1 166 chain 26043 chr9 141213431 + 132668154 132668461 AluSp 311 - 4 311 99847 307 chain 27995 chr9 141213431 + 132746920 132747265 THE1A 353 + 12 353 93015 96 4 0 245 chain 4422 chr9 141213431 + 132751964 132752036 L1MA8 2339 + 2163 2229 201669 30 11 5 31 chain 11095 chr9 141213431 + 132773900 132774035 MLT1A1 405 + 270 405 155823 135 chain 11804 chr9 141213431 + 132818768 132819300 MER30 238 - 0 238 153016 48 3 0 52 2 0 6 4 25 30 328 4 43 4 18 12 chain 29804 chr9 141213431 + 132826459 132826778 AluYb8 318 - 2 318 85422 198 3 0 118 chain 26255 chr9 141213431 + 132834485 132834797 AluYf4 310 - 8 310 99003 7 10 0 295 chain 14880 chr9 141213431 + 132883515 132883720 MER30 238 - 5 238 141685 34 0 3 75 7 14 74 0 18 15 chain 28441 chr9 141213431 + 132912951 132913339 MER41A 554 - 166 554 91417 53 1 0 40 8 27 9 19 0 252 0 1 6 chain 4730 chr9 141213431 + 132923534 132923592 MER103C 291 + 118 176 198170 58 chain 22109 chr9 141213431 + 132950702 132950989 AluSp 311 - 13 311 119741 71 3 14 70 4 7 87 4 1 48 chain 3135 chr9 141213431 + 133011327 133011554 L1MD 993 - 665 825 222252 31 176 109 20 chain 11214 chr9 141213431 + 133020086 133020250 THE1B 368 + 0 165 155374 108 26 27 30 chain 3562 chr9 141213431 + 133068890 133068932 MIRc 230 + 68 110 214277 42 chain 21146 chr9 141213431 + 133243971 133244329 THE1D 372 - 15 362 123384 17 1 0 29 0 2 85 15 16 14 23 25 41 12 0 113 3 0 5 chain 27364 chr9 141213431 + 133272441 133272804 THE1B 368 - 0 368 95067 192 5 4 69 2 3 58 0 5 37 chain 3488 chr9 141213431 + 133281206 133281248 MIRc 230 + 65 107 215541 42 chain 3512 chr9 141213431 + 133286660 133286704 L1MB2 1706 + 1371 1415 215177 44 chain 16045 chr9 141213431 + 133302037 133302266 MER30 238 + 0 238 138228 106 4 16 77 7 4 35 chain 21810 chr9 141213431 + 133323969 133324230 AluSz6 309 - 28 289 120984 261 chain 2609 chr9 141213431 + 133334769 133334811 MLT1C 463 - 318 363 231582 14 3 6 25 chain 3587 chr9 141213431 + 133340777 133340851 MER33 330 - 132 208 213870 22 7 8 13 5 0 11 0 6 16 chain 126114 chr9 141213431 + 133381301 133382739 SVA_D 2077 - 21 2022 29061 618 2 0 28 1 50 20 0 437 133 37 0 3 0 116 596 chain 21139 chr9 141213431 + 133383908 133384192 AluSz6 309 + 2 294 123413 46 6 15 31 0 1 194 2 0 5 chain 3505 chr9 141213431 + 133427955 133427999 MER57B1 401 - 0 44 215288 44 chain 8181 chr9 141213431 + 133500039 133500141 MER30 238 + 133 238 170060 63 0 3 39 chain 3244 chr9 141213431 + 133517181 133517217 MER82 654 - 469 505 220124 36 chain 24094 chr9 141213431 + 133544424 133544718 AluY 311 + 9 287 109765 37 17 0 86 0 1 154 chain 20573 chr9 141213431 + 133555746 133556021 AluSc 308 + 0 289 125385 15 0 7 126 18 25 116 chain 31129 chr9 141213431 + 133566192 133566995 MER4A1 472 + 0 472 82286 53 4 0 122 355 5 45 1 22 139 32 34 52 chain 24922 chr9 141213431 + 133585333 133585628 AluY 311 + 6 300 105205 127 1 0 167 chain 26622 chr9 141213431 + 133587449 133587752 AluSp 311 - 8 311 97586 303 chain 63101 chr9 141213431 + 133634169 133635063 HSMAR1 1287 - 366 1285 51400 216 17 18 75 0 3 34 49 68 102 2 0 103 1 0 137 1 6 157 chain 23674 chr9 141213431 + 133679700 133679983 AluSp 311 + 9 294 112180 127 1 2 6 0 1 149 chain 52985 chr9 141213431 + 133692538 133693128 LTR10C 591 + 0 591 57024 510 0 1 80 chain 3501 chr9 141213431 + 133697681 133697752 L1ME1 1623 - 343 415 215352 31 22 23 18 chain 6956 chr9 141213431 + 133716412 133716507 MER30 238 - 0 103 177773 17 0 2 51 3 9 24 chain 116957 chr9 141213431 + 133785325 133786744 LTR12C 1709 + 0 1709 32142 304 11 10 349 0 119 55 1 0 132 0 41 102 1 0 5 3 1 106 0 4 111 0 29 60 0 102 179 chain 3358 chr9 141213431 + 133838705 133838748 MER58C 217 - 111 154 217905 43 chain 22595 chr9 141213431 + 133841351 133841643 AluY 311 + 0 287 117601 75 9 6 52 3 0 126 1 2 26 chain 24669 chr9 141213431 + 133878582 133878876 AluY 311 + 0 289 106609 118 6 0 13 1 2 156 chain 19988 chr9 141213431 + 133879070 133879338 Tigger3c 601 - 272 538 127180 78 0 1 108 13 10 69 chain 50090 chr9 141213431 + 133880519 133881110 LTR10C 591 + 0 591 58952 34 2 0 476 0 2 79 chain 21120 chr9 141213431 + 133910639 133911017 MSTA 426 - 46 425 123486 10 1 4 156 42 25 30 12 22 28 9 10 47 12 15 4 0 1 27 chain 6235 chr9 141213431 + 133924658 133924789 MLT1D 503 - 116 249 183280 43 44 46 44 chain 26310 chr9 141213431 + 133939768 133940071 AluYf5 307 + 0 301 98791 260 6 4 37 chain 18895 chr9 141213431 + 133964490 133964715 L1PA5 6144 + 5912 6144 130380 214 0 7 11 chain 25915 chr9 141213431 + 133999715 134000000 AluYk4 311 - 9 294 100354 285 chain 134877 chr9 141213431 + 134029624 134032221 L1PB1 5432 - 2 1963 27040 4 1 0 4 1 0 18 1 0 12 2 1 21 1 0 22 2 0 16 1 0 4 5 2 17 280 28 41 23 21 49 20 14 12 1 0 6 1 0 18 48 17 170 1 3 251 0 3 55 3 0 136 0 8 25 0 4 250 1 0 211 6 7 130 323 0 26 15 0 92 11 0 33 6 8 208 0 1 13 chain 14429 chr9 141213431 + 134037291 134037504 MER30 238 + 0 238 143119 107 2 0 10 17 43 58 0 1 19 chain 3775 chr9 141213431 + 134044932 134044978 MER3 215 - 105 151 210732 46 chain 88516 chr9 141213431 + 134046953 134047920 L1PA3long 6157 - 11 978 40176 967 chain 72731 chr9 141213431 + 134086917 134087985 MER11B 1079 + 0 1079 47150 314 1 5 35 3 6 65 12 11 101 0 1 4 6 5 76 5 6 95 27 17 25 1 3 26 0 1 24 5 6 40 1 2 16 3 7 148 7 11 24 0 1 4 chain 22109 chr9 141213431 + 134088565 134088836 AluSp 311 - 13 286 119740 16 0 2 255 chain 24536 chr9 141213431 + 134118735 134119028 AluY 311 + 0 287 107330 83 8 0 49 0 1 143 0 1 10 chain 88530 chr9 141213431 + 134119982 134120989 LTR13 1007 + 0 1007 40173 304 1 0 77 4 5 621 chain 28186 chr9 141213431 + 134189502 134189801 AluYa5 310 - 11 310 92353 299 chain 4956 chr9 141213431 + 134212932 134213059 MLT1C 463 + 45 178 195633 29 54 60 44 chain 522607 chr9 141213431 + 134214453 134220912 L1PA6 6164 - 4 6164 4904 6 2 0 127 7 0 9 0 2 8 1 6 175 0 1 511 2 0 20 0 5 74 0 7 839 0 1 428 0 1 113 5 6 60 0 1 95 0 1 211 0 1 175 332 0 87 0 1 4 1 2 371 0 1 486 0 2 649 3 0 5 0 3 200 0 14 942 2 1 509 chain 11538 chr9 141213431 + 134226890 134228460 Tigger3b 1229 - 462 1172 154154 24 0 4 12 7 0 21 0 7 17 37 39 19 0 4 47 0 1 3 6 0 12 1253 386 33 42 44 37 chain 21373 chr9 141213431 + 134229782 134230113 AluY 311 + 0 307 122610 109 23 0 9 4 0 14 0 1 114 31 33 27 chain 73763 chr9 141213431 + 134232105 134233063 LTR5_Hs 974 + 0 974 46642 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 22 0 2 79 chain 11232 chr9 141213431 + 134233286 134233477 MER87 546 + 59 233 155302 97 3 0 12 24 0 8 7 17 40 chain 24046 chr9 141213431 + 134262155 134262896 MLT2A1 477 - 0 477 110076 6 0 4 10 1 0 28 4 0 13 4 19 60 4 0 58 1 36 19 368 57 24 0 1 24 6 7 111 chain 22329 chr9 141213431 + 134275712 134275995 AluSz6 309 - 16 300 118782 115 1 2 167 chain 6058 chr9 141213431 + 134276594 134276704 L1MB3 1562 - 13 122 184756 21 24 23 65 chain 24669 chr9 141213431 + 134284407 134284703 AluSp 311 - 12 306 106613 16 2 0 278 chain 48125 chr9 141213431 + 134288324 134288902 LTR10C 591 + 0 591 60386 400 5 8 53 0 10 120 chain 19847 chr9 141213431 + 134323718 134323955 AluSc8 310 + 68 309 127664 63 0 4 174 chain 9650 chr9 141213431 + 134333755 134334283 MER30 238 - 5 238 162348 39 1 4 56 2 0 5 6 0 6 325 27 34 39 47 15 chain 22875 chr9 141213431 + 134380179 134380451 AluSg7 307 - 23 296 116213 152 0 1 120 chain 23767 chr9 141213431 + 134422600 134423002 LTR7 482 + 0 477 111667 68 9 47 109 7 39 14 28 29 59 4 5 12 0 2 35 13 14 44 chain 218307 chr9 141213431 + 134423009 134426002 HERVH-int 3825 + 0 3117 17985 333 1 0 63 25 24 26 217 349 431 90 75 130 9 0 44 2 1 18 0 1 111 6 7 168 0 1 394 0 5 80 0 3 86 20 0 122 0 30 535 2 0 80 chain 26597 chr9 141213431 + 134426915 134427315 LTR7 482 + 0 474 97675 50 27 65 109 0 1 5 0 31 44 0 1 54 0 1 4 1 2 52 13 14 41 chain 21545 chr9 141213431 + 134502357 134502628 AluSx 319 + 34 310 121983 32 1 8 54 2 0 182 chain 44898 chr9 141213431 + 134555759 134556271 MER9a2 513 + 0 513 63178 175 0 1 337 chain 260419 chr9 141213431 + 134557547 134560687 HERVK9-int 4720 + 6 4720 15677 17 26 13 13 8 5 4 1 0 65 1 0 9 1 0 30 1 0 65 0 24 127 1 0 658 0 1 172 4 1 286 0 924 32 0 2 696 0 1 271 0 2 469 0 640 79 0 4 104 chain 45009 chr9 141213431 + 134560687 134561198 MER9a2 513 + 0 513 63047 61 0 2 450 chain 3953 chr9 141213431 + 134563917 134563987 MER34C_ 573 + 164 250 208102 32 1 0 7 5 6 12 0 16 13 chain 21127 chr9 141213431 + 134605794 134606105 AluSq 315 + 10 306 123464 45 9 12 13 18 0 53 0 2 132 10 8 31 chain 8511 chr9 141213431 + 134608621 134608728 L1PA8 5853 + 5741 5847 168235 19 1 0 87 chain 34910 chr9 141213431 + 134620309 134620748 LTR3A 482 + 25 473 76331 131 9 18 299 chain 4739 chr9 141213431 + 134649150 134649221 MER74A 558 + 484 557 198039 4 1 0 10 3 6 53 chain 45091 chr9 141213431 + 134658633 134659382 L1PREC2 3366 - 327 1035 62947 29 6 4 34 23 9 11 3 0 30 3 1 14 12 7 12 36 28 7 3 0 3 1 0 43 2 1 54 2 0 35 2 0 100 0 2 187 6 8 5 2 0 84 chain 3457 chr9 141213431 + 134660923 134660963 MIRb 242 - 112 152 216031 40 chain 9125 chr9 141213431 + 134671130 134671256 MSTA 426 - 11 159 164943 34 0 2 59 4 24 29 chain 150017 chr9 141213431 + 134782583 134784278 SVA_D 2077 + 12 2077 24607 146 0 1 602 40 0 118 0 310 94 0 1 19 0 98 676 chain 8958 chr9 141213431 + 134784291 134784392 MER41B 635 - 534 635 165839 101 chain 65635 chr9 141213431 + 134796814 134797569 L1PA5 6144 + 5386 6144 50278 359 0 3 72 1 0 176 0 1 147 chain 27701 chr9 141213431 + 134885290 134885596 L1PA5 6144 - 831 1143 92781 15 0 5 180 0 1 111 chain 74183 chr9 141213431 + 134885596 134886425 L1PA5 6144 + 5311 6140 46418 829 chain 28867 chr9 141213431 + 134913572 134913878 AluYa5 310 - 5 310 89595 179 1 0 126 chain 8110 chr9 141213431 + 134923320 134923436 MER85 139 + 0 126 170434 89 1 11 7 1 0 8 1 2 9 chain 16766 chr9 141213431 + 134964511 134964813 THE1B 368 + 0 302 136209 108 8 9 51 40 27 14 1 5 10 11 19 59 chain 2755 chr9 141213431 + 134966815 134966852 L1MB3 1562 + 1384 1419 229394 26 2 0 9 chain 10758 chr9 141213431 + 134970309 134970438 MLT2A2 560 - 251 380 157167 129 chain 95649 chr9 141213431 + 134970467 134971927 L1PB1 5432 - 9 1298 37914 19 1 0 13 1 0 21 1 0 24 2 0 9 6 5 5 2 0 16 9 0 9 2 0 6 1 0 16 1 0 46 2 1 12 2 1 52 2 0 9 5 1 12 2 1 7 1 0 24 154 12 157 10 1 131 0 1 191 3 0 114 0 12 276 0 1 84 chain 60537 chr9 141213431 + 134976042 134976737 L1PA6 6164 + 5458 6156 52557 30 0 3 665 chain 5323 chr9 141213431 + 135005477 135005536 MLT1B 390 + 103 162 191790 59 chain 3084 chr9 141213431 + 135035722 135035758 MIRb 242 + 67 103 223237 36 chain 9315 chr9 141213431 + 135101352 135101645 L1MC5 759 - 191 532 163989 26 147 194 24 7 8 89 chain 23813 chr9 141213431 + 135122583 135122865 AluSx1 309 + 7 289 111402 282 chain 5352 chr9 141213431 + 135141577 135141645 MIRc 230 + 60 130 191513 49 0 2 19 chain 13128 chr9 141213431 + 135154659 135154811 L1PA5 6144 + 5991 6144 147731 5 0 1 147 chain 21009 chr9 141213431 + 135179240 135179499 AluSx1 309 + 14 289 123881 135 0 2 74 0 15 20 1 0 29 chain 25169 chr9 141213431 + 135180454 135180758 AluY 311 + 0 300 103910 22 5 0 110 0 1 167 chain 3018 chr9 141213431 + 135237604 135237640 LTR43B 570 - 20 56 224668 36 chain 42749 chr9 141213431 + 135268643 135269135 MER9a1 513 + 0 513 65722 19 4 25 469 chain 5556 chr9 141213431 + 135297014 135297077 U5 65 + 0 63 189507 63 chain 5007 chr9 141213431 + 135320229 135320293 L1MB3 1562 - 59 122 195048 35 1 0 28 chain 19207 chr9 141213431 + 135358138 135358345 L1PA3long 6157 + 5946 6153 129514 207 chain 277009 chr9 141213431 + 135401945 135404906 L1HS 6032 + 3070 6031 14815 2961 chain 6698 chr9 141213431 + 135433672 135433756 L1MB7 1623 + 900 984 179699 84 chain 23212 chr9 141213431 + 135528016 135528353 THE1A 353 + 0 333 114634 77 25 12 22 2 12 136 1 0 74 chain 5659 chr9 141213431 + 135536875 135536940 MER20 218 + 96 161 188487 65 chain 54643 chr9 141213431 + 135543825 135544885 MER4E1 777 - 0 777 55938 23 1 3 105 303 0 39 0 4 53 0 8 45 0 4 92 0 1 24 0 3 42 0 4 77 15 3 65 0 2 122 2 0 7 0 9 25 3 0 17 chain 3622 chr9 141213431 + 135549557 135549612 MADE1 96 - 25 96 213304 23 2 18 30 chain 2866 chr9 141213431 + 135563985 135564016 Charlie18a 321 - 202 233 227579 31 chain 57141 chr9 141213431 + 135593413 135594494 MER4E 760 + 0 760 54435 25 1 0 126 0 9 9 16 10 22 0 5 6 24 0 52 0 1 104 0 2 73 1 0 89 4 1 185 304 0 33 0 1 7 chain 18296 chr9 141213431 + 135639880 135640135 L1MA4 2864 + 29 284 132084 30 1 0 82 7 8 10 1 0 4 0 1 120 chain 27981 chr9 141213431 + 135647179 135647536 THE1B 368 - 0 368 93062 176 2 0 20 6 4 113 0 15 40 chain 24049 chr9 141213431 + 135666440 135666810 THE1D 372 - 0 372 110047 11 1 2 135 13 14 16 27 25 6 0 1 99 5 6 57 chain 27106 chr9 141213431 + 135678318 135678667 THE1C 375 - 30 375 95923 161 8 0 31 7 11 142 chain 10780 chr9 141213431 + 135796908 135797062 L1MB8 1703 + 1435 1588 157074 19 14 13 121 chain 3638 chr9 141213431 + 135806883 135806921 tRNA-Gly-GGA 38 + 0 38 213018 38 chain 22127 chr9 141213431 + 135823224 135823502 MER57A1 433 - 153 433 119676 76 0 2 202 chain 25538 chr9 141213431 + 135834494 135834825 THE1C 375 + 0 333 102064 113 0 1 66 0 1 93 1 0 4 0 1 54 chain 4046 chr9 141213431 + 135839119 135839166 U7 62 + 1 48 206686 47 chain 23207 chr9 141213431 + 135893238 135893540 Tigger1 2417 + 878 1182 114657 206 1 3 95 chain 69339 chr9 141213431 + 135900563 135901550 LTR13 1007 + 0 1007 48665 73 6 1 7 0 3 27 13 19 251 8 9 105 1 12 121 2 1 57 5 2 11 8 17 95 6 7 149 0 1 4 0 1 3 4 0 31 chain 78999 chr9 141213431 + 135916164 135917161 LTR13 1007 + 0 1007 44063 71 2 0 10 0 2 298 4 5 138 6 10 160 1 4 6 0 2 240 4 6 23 3 1 31 chain 3833 chr9 141213431 + 135937606 135937681 MER53 195 + 29 106 209879 36 17 19 22 chain 3742 chr9 141213431 + 135958165 135958239 MER53 195 + 30 106 211298 35 17 19 22 chain 2947 chr9 141213431 + 135992661 135992692 MIRb 242 - 110 141 226155 31 chain 23360 chr9 141213431 + 136011883 136012174 AluSg7 307 + 3 292 113875 128 0 1 20 1 2 72 0 1 58 5 0 7 chain 24005 chr9 141213431 + 136025382 136025659 AluSq10 312 - 23 301 110307 160 0 1 117 chain 13675 chr9 141213431 + 136044631 136044948 MER21A 919 - 635 900 145693 66 91 54 9 12 0 35 16 0 55 3 16 30 chain 29550 chr9 141213431 + 136060722 136061032 AluYa5 310 - 0 310 86414 310 chain 2906 chr9 141213431 + 136093152 136093213 LTR41B 718 + 465 528 226953 14 16 18 31 chain 40189 chr9 141213431 + 136099778 136100232 L1PA5 6144 - 6 460 69046 454 chain 24770 chr9 141213431 + 136108318 136108595 L1PA5 6144 - 4 280 106058 255 1 0 21 chain 24002 chr9 141213431 + 136108595 136108871 L1PA5 6144 + 5595 5871 110322 276 chain 24770 chr9 141213431 + 136118123 136118417 AluSc 308 + 8 301 106057 249 1 0 44 chain 38016 chr9 141213431 + 136144575 136145048 LTR15 485 + 0 478 72107 62 0 2 86 0 2 124 0 4 157 1 0 5 2 0 36 chain 52352 chr9 141213431 + 136147824 136148449 PABL_A 660 + 0 660 57397 81 0 9 220 0 3 18 0 23 306 chain 10378 chr9 141213431 + 136160395 136160522 MER51E 476 - 264 391 158796 127 chain 75945 chr9 141213431 + 136166428 136168638 HUERS-P1-int 2401 - 262 2196 45518 15 2 0 20 0 9 16 128 90 11 26 25 15 248 146 17 7 0 18 2 1 19 2 0 13 3 0 7 45 33 22 4 0 10 20 22 24 6 7 10 4 0 7 24 26 5 1 0 15 1 0 52 95 94 10 2 0 29 0 2 72 9 15 22 2 0 61 25 22 25 1 0 4 8 6 97 2 0 8 1 0 12 0 7 35 11 15 109 22 14 107 6 10 7 7 0 55 0 2 48 8 7 18 2 0 23 10 1 12 2 0 5 1 0 24 20 0 18 1 0 7 2 0 8 1 0 37 1 0 8 3 0 38 129 77 15 10 7 14 10 6 28 6 1 8 1 0 29 chain 7760 chr9 141213431 + 136171332 136171464 L1PA8 5853 + 5723 5853 172545 11 8 7 11 12 11 90 chain 56357 chr9 141213431 + 136175695 136176336 SVA_B 1603 + 921 1603 54929 29 0 40 147 0 1 465 chain 3777 chr9 141213431 + 136177993 136178039 HY3 101 + 49 95 210698 46 chain 9931 chr9 141213431 + 136178443 136178580 MER51E 476 + 0 148 160925 24 8 9 48 0 10 57 chain 22622 chr9 141213431 + 136178588 136178864 AluSx1 309 + 8 283 117479 150 1 0 125 chain 9183 chr9 141213431 + 136182788 136182891 L1PA3long 6157 + 6050 6153 164644 103 chain 24010 chr9 141213431 + 136193509 136193791 AluSp 311 + 11 295 110268 173 0 2 109 chain 89275 chr9 141213431 + 136195661 136196668 LTR13 1007 - 0 1007 39895 33 4 0 726 0 4 244 chain 26318 chr9 141213431 + 136205131 136205442 AluSp 311 - 1 311 98748 182 1 0 128 chain 23662 chr9 141213431 + 136244253 136244551 AluSp 311 + 0 294 112238 32 1 0 76 1 3 172 5 0 11 chain 60409 chr9 141213431 + 136256925 136257634 SVA_D 2077 + 1352 2077 52629 36 0 1 4 22 20 62 5 1 343 0 1 103 0 20 134 chain 37401 chr9 141213431 + 136283583 136284040 LTR2 463 - 0 462 72949 24 1 0 28 1 0 30 0 1 250 0 3 69 0 3 54 chain 4459 chr9 141213431 + 136403086 136403139 MIRb 242 + 69 122 201245 53 chain 28960 chr9 141213431 + 136414112 136414425 AluYa5 310 - 0 310 89175 184 3 0 126 chain 21887 chr9 141213431 + 136560289 136560585 AluSx 319 + 7 303 120675 126 21 21 149 chain 20790 chr9 141213431 + 136564340 136564629 AluSp 311 + 20 283 124646 15 1 0 3 25 0 245 chain 12606 chr9 141213431 + 136600646 136600883 LTR43 600 + 28 250 149818 33 56 43 106 1 0 24 1 0 16 chain 85154 chr9 141213431 + 136609699 136610648 SVA_D 2077 + 601 2077 41468 160 0 40 77 0 437 37 0 49 43 0 1 632 chain 136824 chr9 141213431 + 136613949 136616181 L1M1 2793 - 128 2260 26676 37 1 0 7 9 13 59 0 3 6 0 6 198 0 7 24 0 3 6 3 0 20 1 2 163 4 7 29 20 22 323 0 2 40 0 5 12 11 0 276 0 3 17 0 1 61 2 1 39 2 3 12 2 0 7 4 0 64 17 16 118 1 0 50 1 0 52 2 0 49 1 0 8 5 3 52 1 0 8 2 0 56 2 0 9 4 1 20 2 0 5 2 0 11 13 7 5 2 0 11 9 4 41 136 62 9 3 0 11 8 6 5 1 0 6 3 0 9 2 0 13 1 0 7 chain 10847 chr9 141213431 + 136631320 136631443 L1PA5 6144 - 530 653 156797 123 chain 35134 chr9 141213431 + 136631443 136631872 L1PA5 6144 + 5682 6127 76016 287 4 21 6 0 1 39 6 4 87 chain 24701 chr9 141213431 + 136684299 136684585 AluY 311 + 15 297 106427 108 1 0 3 3 0 171 chain 19897 chr9 141213431 + 136761052 136761266 SVA_E 1901 - 0 213 127494 19 1 0 194 chain 25175 chr9 141213431 + 136761945 136762224 AluY 311 + 11 291 103873 121 0 1 158 chain 67402 chr9 141213431 + 136788488 136789272 L1PA6 6164 + 5378 6161 49485 211 0 2 495 0 1 66 4 0 8 chain 74079 chr9 141213431 + 136822901 136823863 LTR5_Hs 974 + 0 974 46471 115 5 13 41 1 0 116 0 1 181 0 1 188 1 0 147 1 0 16 8 15 19 20 18 103 chain 4071 chr9 141213431 + 136882477 136882548 MER4D 903 - 337 409 206303 21 13 14 37 chain 9935 chr9 141213431 + 136905695 136905806 L1PA7 6471 - 11 122 160899 111 chain 2585 chr9 141213431 + 136939823 136939881 L1M4c 1769 + 204 261 231851 17 18 17 23 chain 124885 chr9 141213431 + 136940286 136941699 SVA_B 1603 + 6 1602 29430 16 0 20 624 0 40 146 1 124 626 chain 4833 chr9 141213431 + 136947392 136947450 L1MB5 1630 + 446 504 196989 58 chain 77132 chr9 141213431 + 136957557 136958526 LTR5_Hs 974 - 0 974 44899 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 177 0 1 122 1 0 167 chain 33187 chr9 141213431 + 136965797 136966647 LTR10E 629 - 30 624 78918 29 25 22 12 6 5 155 1 0 24 304 0 26 5 4 25 2 1 117 35 88 44 0 1 35 0 1 5 chain 4918 chr9 141213431 + 136971133 136971973 L1MA4 2864 + 1418 1699 196073 43 759 199 13 0 1 25 chain 132916 chr9 141213431 + 136979900 136984158 SVA_F 1814 - 0 1479 27441 540 1684 0 312 0 15 49 882 0 10 225 0 187 3 0 366 chain 5683 chr9 141213431 + 136980440 136980500 SVA_F 1814 - 716 776 150605 60 chain 3630 chr9 141213431 + 136980500 136980550 SVA_F 1814 - 649 699 131048 50 chain 15113 chr9 141213431 + 136980550 136981215 SVA_F 1814 - 601 1017 68116 250 0 15 5 127 0 62 0 1 25 1 0 30 136 0 10 1 0 18 chain 8432 chr9 141213431 + 136980805 136980932 SVA_F 1814 - 680 807 73260 127 chain 3108 chr9 141213431 + 136981050 136981102 SVA_F 1814 - 749 801 81168 52 chain 3320 chr9 141213431 + 136981102 136981152 SVA_F 1814 - 914 964 73260 12 0 1 32 1 0 5 chain 6990 chr9 141213431 + 136981215 136981294 SVA_F 1814 - 737 816 107493 79 chain 4324 chr9 141213431 + 136981294 136981339 SVA_F 1814 - 880 925 202915 45 chain 1554 chr9 141213431 + 136981347 136981373 SVA_F 1814 - 884 910 81168 26 chain 11056 chr9 141213431 + 136981419 136981978 SVA_F 1814 - 540 986 61984 312 0 15 49 128 0 17 0 1 25 1 0 27 chain 841 chr9 141213431 + 136981784 136981821 SVA_F 1814 - 1049 1089 68116 27 0 3 10 chain 7841 chr9 141213431 + 136981821 136981906 SVA_F 1814 - 766 851 84598 85 chain 818 chr9 141213431 + 136981978 136982014 SVA_F 1814 - 1106 1142 68116 36 chain 10293 chr9 141213431 + 136982014 136982124 SVA_F 1814 - 606 716 88076 110 chain 1575 chr9 141213431 + 136982485 136982542 SVA_F 1814 - 725 782 123520 57 chain 2006 chr9 141213431 + 136982542 136982568 SVA_F 1814 - 1025 1050 237802 14 1 0 11 chain 4237 chr9 141213431 + 136982568 136982611 SVA_F 1814 - 872 915 204072 43 chain 16164 chr9 141213431 + 136982613 136982789 SVA_F 1814 - 676 852 137861 176 chain 2544 chr9 141213431 + 136982789 136982817 SVA_F 1814 - 676 704 141636 28 chain 2345 chr9 141213431 + 136982817 136982843 SVA_F 1814 - 895 921 196595 26 chain 34052 chr9 141213431 + 136982878 136983239 SVA_F 1814 - 540 916 77540 312 0 15 49 chain 7306 chr9 141213431 + 136983239 136983350 SVA_F 1814 - 725 836 89485 111 chain 9245 chr9 141213431 + 136983377 136983478 SVA_F 1814 - 686 787 139129 101 chain 4211 chr9 141213431 + 136983493 136983539 SVA_F 1814 - 802 848 139129 46 chain 2427 chr9 141213431 + 136983539 136983567 SVA_F 1814 - 912 941 171201 21 0 1 7 chain 3466 chr9 141213431 + 137012537 137012577 MER20 218 + 35 75 215872 40 chain 23064 chr9 141213431 + 137029253 137029563 AluSx 319 + 8 292 115332 125 2 0 148 24 0 11 chain 4046 chr9 141213431 + 137034325 137034380 MER44A 345 - 92 160 206716 32 1 14 22 chain 24618 chr9 141213431 + 137133215 137133511 AluY 311 + 0 296 106896 31 1 0 101 0 1 163 chain 13357 chr9 141213431 + 137140480 137140640 AluSp 311 + 135 295 146853 160 chain 2780 chr9 141213431 + 137373492 137373523 MLT1E1A 663 - 45 76 229022 31 chain 225093 chr9 141213431 + 137398119 137400718 L1PA6 6164 - 14 2624 17588 729 0 1 120 0 4 519 0 4 276 0 7 580 5 0 370 chain 5806 chr9 141213431 + 137421096 137421184 L1MB7 1623 - 436 524 187081 40 7 0 6 0 7 35 chain 227869 chr9 141213431 + 137478686 137481165 L1PA3long 6157 - 1 2482 17429 146 0 1 549 0 1 1784 chain 38017 chr9 141213431 + 137481165 137481585 L1PA3long 6157 + 3247 3667 71837 420 chain 43282 chr9 141213431 + 137523087 137523635 MLT2A2 560 + 0 559 65076 401 0 11 147 chain 30215 chr9 141213431 + 137539753 137540223 MLT2A1 477 + 0 477 84142 48 0 1 90 0 1 22 15 19 165 3 0 38 47 52 22 1 0 19 chain 49176 chr9 141213431 + 137541458 137542038 L1PA7 6471 + 5889 6467 59613 248 1 0 4 0 1 78 2 0 247 chain 74200 chr9 141213431 + 137606780 137607741 LTR5_Hs 974 - 3 974 46412 188 7 7 61 0 2 27 6 12 17 0 1 19 12 11 14 0 1 149 0 4 222 3 0 236 chain 22624 chr9 141213431 + 137693358 137693647 AluSg 306 + 6 293 117461 268 8 6 13 chain 18304 chr9 141213431 + 137695501 137695706 AluY 311 + 95 300 132065 205 chain 7050 chr9 141213431 + 137728059 137728213 MSTB1 431 - 117 289 177111 7 6 0 23 41 51 11 0 14 66 chain 32775 chr9 141213431 + 137749419 137749825 L1PA7 6471 + 6063 6470 79573 300 8 0 6 0 8 5 0 1 87 chain 38494 chr9 141213431 + 137751351 137751926 LTR10E 629 + 0 620 71445 15 1 0 76 30 83 122 2 1 27 1 0 52 1 0 155 6 5 12 25 22 50 chain 173827 chr9 141213431 + 137757618 137759496 L1PA2 6032 + 4151 6029 21608 1878 chain 16555 chr9 141213431 + 137764372 137764672 THE1B 368 - 61 368 136781 67 1 0 8 1 0 7 19 24 10 12 11 11 1 0 48 18 19 61 1 6 35 chain 27471 chr9 141213431 + 137769681 137770085 MLT2A1 477 + 0 455 94743 134 6 7 23 5 9 172 8 18 22 4 0 6 3 43 21 chain 39047 chr9 141213431 + 137793362 137793824 L1PA5 6144 - 2 471 70669 7 4 0 195 0 11 256 chain 15265 chr9 141213431 + 137793894 137794067 L1PA4 6152 - 0 175 140585 6 0 2 167 chain 230604 chr9 141213431 + 137815869 137819125 HERVL-int 5654 + 2290 5228 17279 1166 0 9 171 0 6 122 0 2 602 0 4 23 10 11 186 320 0 123 2 1 4 0 1 228 7 0 133 19 36 11 30 0 99 chain 42635 chr9 141213431 + 137819873 137820415 MLT2A2 560 + 0 560 65855 278 0 1 127 0 11 73 7 8 18 0 5 39 chain 7653 chr9 141213431 + 137845579 137845724 L1MB8 1703 - 1171 1309 173201 21 7 8 35 24 16 58 chain 64092 chr9 141213431 + 137878109 137878835 L1PA5 6144 + 5404 6130 50968 726 chain 115686 chr9 141213431 + 137882023 137883425 LTR12C 1709 - 0 1709 32562 481 0 4 19 0 11 76 8 165 99 0 118 158 2 1 108 4 5 203 0 1 170 0 3 8 0 13 66 chain 10233 chr9 141213431 + 137895177 137895301 MER44A 345 + 107 231 159458 124 chain 20307 chr9 141213431 + 137920903 137921165 LTR71B 605 + 329 605 126219 191 9 23 62 chain 19983 chr9 141213431 + 137936682 137936963 AluSq2 311 + 13 301 127197 121 12 11 60 10 18 78 chain 21061 chr9 141213431 + 137947076 137947551 THE1B 368 - 0 368 123687 76 138 23 52 19 15 6 1 0 24 6 4 101 8 23 44 chain 26182 chr9 141213431 + 137963699 137963995 AluY 311 + 8 305 99271 124 0 1 172 chain 3413 chr9 141213431 + 138031441 138031490 MLT1J 494 - 364 410 216883 5 2 0 31 1 0 10 chain 80810 chr9 141213431 + 138041410 138042370 LTR13A 966 - 0 966 43262 339 0 1 122 0 5 265 0 1 72 1 0 161 chain 21454 chr9 141213431 + 138092218 138092522 THE1B 368 - 62 368 122314 63 2 1 10 1 0 18 4 8 4 0 1 32 1 0 169 chain 89317 chr9 141213431 + 138097680 138098686 LTR13 1007 - 0 1007 39879 270 0 1 338 0 1 4 1 0 7 0 1 81 1 0 304 chain 45721 chr9 141213431 + 138187541 138188113 LTR71B 605 + 19 605 62295 107 9 23 456 chain 26714 chr9 141213431 + 138273141 138273489 THE1B 368 + 16 368 97277 149 8 7 29 0 1 7 2 6 153 chain 4804 chr9 141213431 + 138279845 138280021 MER4B 649 + 0 199 197309 25 1 0 22 86 78 18 6 38 18 chain 21576 chr9 141213431 + 138304190 138304432 L1PA4 6152 + 5909 6151 121863 242 chain 14401 chr9 141213431 + 138312679 138313948 MER41B 635 + 1 627 143206 25 3 0 70 1055 415 116 chain 34510 chr9 141213431 + 138318088 138318523 MER41B 635 + 0 436 76890 127 1 2 307 chain 17798 chr9 141213431 + 138324346 138324645 THE1B 368 - 62 368 133417 66 0 8 18 0 4 10 1 0 5 40 35 36 17 18 106 chain 343438 chr9 141213431 + 138330209 138334877 HERVE-int 4064 - 0 4064 11801 312 1 0 349 2 0 556 593 0 401 20 25 233 0 1 653 24 1 461 1 0 4 0 1 195 0 1 15 0 1 42 0 1 100 5 7 65 1 5 635 chain 38849 chr9 141213431 + 138331449 138331966 LTR6B 557 + 16 532 70949 31 1 0 190 2 1 4 0 1 116 0 1 42 3 0 72 19 20 6 0 1 31 chain 10042 chr9 141213431 + 138336002 138336131 LTR2C 499 - 16 144 160368 48 1 0 80 chain 22669 chr9 141213431 + 138351335 138351598 AluSp 311 - 47 310 117217 263 chain 26315 chr9 141213431 + 138358087 138358394 AluSc5 308 - 1 308 98765 307 chain 28829 chr9 141213431 + 138436323 138436636 AluYa5 310 + 0 310 89763 132 3 0 178 chain 2644 chr9 141213431 + 138447469 138447571 MLT1F 544 + 407 529 231101 24 41 0 9 11 72 17 chain 27245 chr9 141213431 + 138463426 138463771 LTR10F 562 - 0 375 95446 318 1 31 26 chain 34719 chr9 141213431 + 138464379 138464927 MER51D 577 - 0 528 76596 40 2 1 26 1 0 12 3 0 104 2 0 11 1 0 71 0 1 188 68 55 19 chain 26640 chr9 141213431 + 138489596 138489973 THE1B 368 + 0 368 97508 40 0 5 126 1 0 16 9 5 101 1 0 35 7 1 34 2 0 5 chain 45162 chr9 141213431 + 138517201 138517785 LTR71B 605 + 0 602 62862 95 1 0 4 6 7 27 2 18 260 0 1 56 1 2 132 chain 29044 chr9 141213431 + 138529845 138530198 THE1A 353 - 0 353 88785 243 2 1 26 0 1 82 chain 60884 chr9 141213431 + 138535492 138536242 MER4E 760 - 7 760 52394 15 0 2 290 0 1 281 1 0 145 1 2 17 chain 39626 chr9 141213431 + 138536412 138536977 LTR10B1 532 + 0 532 69853 47 0 7 55 0 3 61 12 3 14 32 0 41 4 2 299 chain 54344 chr9 141213431 + 138538453 138539202 MER4E1 777 + 19 769 56136 160 7 6 279 1 2 72 14 28 59 26 1 18 0 12 113 chain 14950 chr9 141213431 + 138544899 138545091 MLT2A2 560 - 370 560 141473 10 2 0 180 chain 42824 chr9 141213431 + 138548259 138549140 PABL_B 668 + 0 621 65619 52 0 2 40 319 0 150 0 45 168 4 5 86 6 17 56 chain 24912 chr9 141213431 + 138553426 138553716 AluY 311 + 2 299 105261 130 0 1 140 0 6 20 chain 45860 chr9 141213431 + 138554136 138554726 PABL_B 668 + 0 638 62170 240 0 45 164 1 2 68 0 2 117 chain 26564 chr9 141213431 + 138560852 138561211 THE1B 368 + 0 368 97789 44 0 15 115 1 0 18 4 0 52 0 1 4 2 1 43 1 0 75 chain 22700 chr9 141213431 + 138567433 138567724 AluSz6 309 + 0 290 117077 8 3 0 11 0 1 90 1 2 178 chain 23669 chr9 141213431 + 138692336 138692622 AluY 311 + 10 296 112205 17 1 0 103 1 2 164 chain 28579 chr9 141213431 + 138724924 138725226 AluYa5 310 - 8 310 90826 302 chain 510087 chr9 141213431 + 138732426 138739683 L1PA7 6471 + 0 6447 6156 11 2 11 126 0 6 80 20 35 142 0 1 236 2 1 318 0 2 37 5 4 221 0 4 604 0 1 121 0 6 28 0 2 283 0 4 92 4 0 115 1 0 17 308 0 58 10 20 165 315 0 144 0 3 18 0 3 506 0 80 44 0 4 138 1 0 316 0 3 191 1 0 128 0 1 278 0 1 338 3 2 70 18 5 204 0 4 94 4 0 30 0 1 104 0 1 140 1 0 9 1 3 10 10 7 26 6 4 135 0 2 39 0 1 140 332 0 92 0 10 51 3 0 167 0 6 14 1 0 25 0 1 4 3 2 97 chain 24403 chr9 141213431 + 138803053 138803391 THE1B 368 - 0 352 108063 75 0 1 120 14 11 53 0 1 39 9 24 28 chain 8085 chr9 141213431 + 138806314 138806464 MER65A 464 - 288 462 170575 29 2 4 32 3 11 44 19 33 21 chain 24665 chr9 141213431 + 138815749 138816040 AluY 311 + 5 296 106636 127 0 1 140 1 0 23 chain 24685 chr9 141213431 + 138828339 138828638 AluSg7 307 - 7 307 106522 121 0 1 178 chain 6964 chr9 141213431 + 138887076 138887174 L1PA5 6144 - 3 97 177719 6 4 0 88 chain 3092 chr9 141213431 + 138921165 138921199 MER52A 1651 + 886 920 223075 34 chain 22813 chr9 141213431 + 138968580 138968856 AluY 311 + 8 287 116514 125 1 0 46 2 5 4 0 1 98 chain 21634 chr9 141213431 + 139161219 139161511 AluSc8 310 + 6 301 121641 116 3 7 132 0 1 15 0 2 9 2 0 5 2 0 8 chain 76926 chr9 141213431 + 139161979 139162940 LTR13A 966 - 7 966 45009 205 20 12 108 6 7 123 0 5 265 0 1 72 1 0 161 chain 22853 chr9 141213431 + 139319720 139320012 AluSp 311 - 10 296 116319 12 7 0 150 5 6 118 chain 20791 chr9 141213431 + 139339078 139339353 AluSp 311 + 22 304 124641 52 0 8 92 23 22 108 chain 26229 chr9 141213431 + 139375581 139375889 AluYf5 307 - 4 307 99092 35 10 8 134 3 0 126 chain 23859 chr9 141213431 + 139454821 139455122 MSTA-int 1630 + 1316 1624 111133 200 0 6 27 0 1 74 chain 22068 chr9 141213431 + 139506722 139506995 AluSx 319 + 10 280 119928 140 8 5 125 chain 16664 chr9 141213431 + 139531778 139532014 AluSc 308 + 39 302 136496 69 4 8 95 14 37 54 chain 5710 chr9 141213431 + 139588658 139588731 MER53 195 + 109 180 188011 23 2 0 48 chain 14826 chr9 141213431 + 139593316 139593472 SVA_E 1901 + 1745 1901 141856 156 chain 13227 chr9 141213431 + 139603001 139603171 MER9a3 513 + 341 513 147364 74 0 2 29 2 0 8 0 2 57 chain 74371 chr9 141213431 + 139628434 139629437 LTR13 1007 - 0 1007 46327 31 19 17 25 7 11 68 0 1 36 2 3 73 0 2 35 3 1 318 4 5 269 32 33 6 2 0 73 chain 23669 chr9 141213431 + 139655725 139656012 AluSp 311 - 25 311 112206 154 1 0 132 chain 23142 chr9 141213431 + 139657076 139657395 AluSc8 310 + 5 305 114929 127 42 23 150 chain 19532 chr9 141213431 + 139660322 139660583 MER51B 395 + 135 394 128564 5 1 0 47 1 0 45 1 0 20 0 1 16 3 1 5 0 2 117 chain 79016 chr9 141213431 + 139660758 139661748 LTR13 1007 + 8 1007 44054 60 2 0 23 0 6 7 6 0 277 4 5 313 0 9 188 1 2 109 chain 31432 chr9 141213431 + 139673842 139674246 MER11A 1151 - 650 1149 81762 55 5 6 146 4 0 64 1 0 52 0 99 77 chain 268913 chr9 141213431 + 139676363 139682433 HERVK-int 6823 - 1308 6107 15238 551 2 1 880 3 4 237 2578 1309 694 20 14 369 1 0 58 1 0 201 0 3 142 34 33 47 46 49 104 5 6 97 chain 5806 chr9 141213431 + 139692199 139692269 LTR5B 1012 + 939 1012 187082 17 0 1 46 0 2 7 chain 25995 chr9 141213431 + 139712544 139712843 AluY 311 + 11 311 100036 121 0 1 178 chain 26172 chr9 141213431 + 139717265 139717558 AluYk4 311 + 7 300 99319 293 chain 24051 chr9 141213431 + 139718778 139719070 AluSg7 307 - 3 297 110039 37 1 3 254 chain 22293 chr9 141213431 + 139881291 139881571 AluY 311 + 29 308 118940 103 0 1 143 8 6 26 chain 88184 chr9 141213431 + 139898600 139899599 LTR13 1007 + 0 1007 40305 471 0 3 66 0 1 158 2 0 42 0 1 166 0 5 94 chain 27769 chr9 141213431 + 139932028 139932415 MLT2A1 477 + 0 398 93805 17 8 12 111 0 1 28 10 18 21 1 0 77 0 3 97 4 0 13 chain 24683 chr9 141213431 + 139988008 139988293 AluY 311 + 8 290 106528 123 3 0 159 chain 81416 chr9 141213431 + 140013011 140014013 LTR13 1007 + 0 1007 43005 141 9 13 227 4 5 318 3 1 36 0 1 73 0 1 191 chain 79323 chr9 141213431 + 140015828 140016781 LTR13_ 950 + 0 950 43895 130 0 3 129 0 1 6 0 2 114 1 2 219 11 0 139 0 1 204 chain 24486 chr9 141213431 + 140017560 140017858 AluSx1 309 + 6 306 107625 59 2 4 237 chain 24608 chr9 141213431 + 140133803 140134090 AluSg4 309 + 11 301 106951 59 0 3 228 chain 79019 chr9 141213431 + 140156138 140157136 LTR13 1007 - 0 1007 44050 23 11 9 53 0 4 105 0 1 101 27 27 554 0 3 51 1 4 72 chain 76139 chr9 141213431 + 140182768 140183619 SVA_F 1814 + 683 1814 45397 22 6 46 17 1 194 166 1 49 10 1 0 627 chain 3714 chr9 141213431 + 140188832 140188996 MLT1J 494 + 94 272 211725 30 109 123 25 chain 26026 chr9 141213431 + 140219148 140219443 AluYk4 311 - 16 311 99918 295 chain 60982 chr9 141213431 + 140226401 140229813 L1PB3 3668 + 2078 3151 52342 29 32 10 34 0 1 105 0 1 96 6 7 51 560 1 37 1445 8 115 27 26 68 1 0 48 91 94 96 325 5 78 2 0 17 3 0 30 2 0 31 17 20 6 1 0 59 chain 40794 chr9 141213431 + 140227351 140227888 MLT2A2 560 + 0 551 68184 27 0 5 104 0 6 61 0 1 26 1 2 216 6 7 96 chain 24304 chr9 141213431 + 140229256 140229545 AluSc8 310 + 9 299 108639 123 0 3 153 2 0 11 chain 25531 chr9 141213431 + 140233056 140233361 AluY 311 + 0 299 102093 133 16 10 156 chain 2586 chr9 141213431 + 140235838 140235928 MER68 562 - 55 147 231849 13 25 26 11 15 16 26 chain 18705 chr9 141213431 + 140240478 140240719 AluY 311 + 74 311 130928 31 7 2 25 0 1 178 chain 22341 chr9 141213431 + 140241263 140241551 AluSg7 307 - 13 293 118742 10 6 0 55 9 6 91 0 1 117 chain 27822 chr9 141213431 + 140269463 140269758 AluYg6 310 - 15 310 93625 295 chain 117336 chr9 141213431 + 140294710 140297189 THE1A-int 1579 - 10 1579 32015 220 301 0 217 9 10 141 314 2 52 1 2 420 0 2 5 2 0 17 359 58 87 2 0 213 7 10 51 0 1 61 chain 17478 chr9 141213431 + 140313548 140314316 LTR49-int 1717 + 123 596 134310 29 23 27 60 1 0 30 72 75 28 7 6 40 316 10 40 58 64 64 chain 3210 chr9 141213431 + 140321548 140321592 Ricksha_0 1343 - 62 107 220747 9 1 0 7 0 2 27 chain 3546 chr9 141213431 + 140336430 140336473 MER41D 557 + 485 530 214615 35 0 2 8 chain 18526 chr9 141213431 + 140367423 140367712 THE1B 368 - 67 368 131435 58 2 1 11 1 0 17 1 5 9 7 10 21 1 0 15 7 15 139 chain 20226 chr9 141213431 + 140376132 140376395 AluYc 301 + 0 279 126444 51 0 6 21 0 7 33 13 16 145 chain 90685 chr9 141213431 + 140404216 140405222 LTR13 1007 + 0 1007 39395 448 0 1 558 chain 77856 chr9 141213431 + 140419692 140420645 LTR13_ 950 - 0 950 44586 204 0 1 139 11 0 211 9 10 114 0 2 6 0 1 129 0 3 130 chain 81033 chr9 141213431 + 140439998 140440958 LTR13 1007 + 47 1007 43177 26 2 0 308 4 5 429 0 1 191 chain 89656 chr9 141213431 + 140453432 140454438 LTR13 1007 + 0 1007 39763 110 1 0 815 0 2 80 chain 8070 chr9 141213431 + 140489396 140489543 Tigger4a 237 + 71 236 170651 48 39 57 60 chain 29259 chr9 141213431 + 140491936 140492243 AluYa5 310 - 3 310 87740 307 chain 3204 chr9 141213431 + 140495314 140495368 MLT1H2 457 - 29 87 220883 31 7 11 16 chain 3946 chr9 141213431 + 140528227 140528273 L1MB7 1623 - 651 697 208176 46 chain 28340 chr9 141213431 + 140570231 140570535 AluYa5 310 - 7 310 91793 210 1 0 93 chain 20400 chr9 141213431 + 140655192 140655452 AluY 311 + 13 276 125894 105 1 2 6 0 1 79 8 9 61 chain 4466 chr9 141213431 + 140658445 140658550 MER5A 189 - 81 189 201160 22 42 45 41 chain 6766 chr9 141213431 + 140661863 140661965 Tigger4a 237 - 0 108 179201 46 0 7 7 7 6 42 chain 29060 chr9 141213431 + 140662990 140663301 AluYa5 310 - 0 310 88718 217 1 0 93 chain 27371 chr9 141213431 + 140744484 140744903 LTR7B 505 + 0 491 95045 88 4 3 17 0 10 66 35 11 17 0 88 65 1 0 23 0 1 52 14 13 37 chain 16601 chr9 141213431 + 140758439 140758641 AluSc5 308 - 25 227 136667 202 chain 20770 chr9 141213431 + 140797562 140797839 AluSc 308 + 9 282 124715 122 26 22 129 chain 9559 chr9 141213431 + 140819934 140820091 L1MD1 2063 - 1324 1481 162780 84 17 19 15 1 0 7 1 0 32 chain 38650 chr9 141213431 + 140829052 140829544 L1PBa1 4058 + 1127 1617 71225 181 4 0 247 1 2 37 0 1 22 chain 146253 chr9 141213431 + 140829559 140831648 L1PA6 6164 - 2 1714 25122 145 2 1 422 0 1 89 390 0 146 0 10 197 0 4 474 1 0 223 chain 352159 chr9 141213431 + 140831658 140837403 L1PB1 5432 + 573 5420 11545 455 324 0 201 0 2 144 53 59 111 0 4 35 3 6 256 313 0 50 0 1 114 0 5 41 2 1 170 1 0 25 357 0 198 0 1 40 0 1 396 0 1 99 0 1 152 0 1 52 0 2 66 0 1 265 4 0 196 5 0 6 9 1 211 4 86 102 0 2 41 0 20 12 1 0 98 0 1 31 0 2 107 10 7 175 0 3 75 0 2 242 63 66 88 1 2 9 1 0 24 1 0 9 1 0 11 15 9 6 0 1 40 8 7 15 1 0 45 1 0 15 23 16 15 13 10 9 2 0 24 1 0 21 2 1 12 1 0 16 chain 27916 chr9 141213431 + 140838009 140838425 LTR3A 482 - 40 455 93297 36 4 3 16 5 7 4 0 1 110 4 0 8 27 29 153 1 0 48 chain 169584 chr9 141213431 + 140855574 140857845 L1PA10 4194 - 326 2612 22106 19 8 3 160 0 24 29 11 14 79 3 7 294 16 2 119 0 2 453 7 0 56 2 1 126 8 12 238 0 4 276 0 1 367 chain 3291 chr9 141213431 + 140885012 140885061 L1PB1 5432 + 17 60 219154 10 6 0 33 chain 4880 chr9 141213431 + 140887271 140887328 L1PB1 5432 + 2100 2157 196482 57 chain 6377 chr9 141213431 + 140887336 140887423 L1PB1 5432 + 2166 2253 182194 87 chain 44332 chr9 141213431 + 140887425 140888174 L1PB1 5432 + 2254 2838 63785 247 1 0 34 162 4 62 2 0 86 4 0 151 chain 53136 chr9 141213431 + 140888175 140888864 L1PB1 5432 + 2838 3529 56935 125 0 1 218 1 0 95 3 4 95 1 0 10 5 6 38 11 12 87 chain 10484 chr9 141213431 + 140888868 140888995 L1PB1 5432 + 3529 3656 158317 127 chain 115956 chr9 141213431 + 140889004 140891103 L1PB1 5432 + 3657 5430 32473 361 322 0 306 0 1 12 1 2 27 0 1 10 4 3 23 0 1 104 7 12 75 10 14 19 3 0 63 0 9 28 1 5 64 5 10 123 8 5 10 0 1 56 1 0 96 25 19 21 7 6 12 30 24 40 2 1 15 1 0 45 1 0 15 49 45 5 2 0 24 8 7 14 1 0 13 1 0 11 1 0 7 1 0 4 1 0 4 chain 2898 chr9 141213431 + 140932504 140932541 L1MC5 759 - 491 528 227060 37 chain 32049 chr9 141213431 + 140934855 140935336 MLT2A1 477 - 0 477 80780 20 1 0 28 3 0 10 8 1 7 1 0 15 4 1 107 0 3 66 12 11 21 10 18 28 5 6 135 chain 55715 chr9 141213431 + 140986249 140987332 MER11A 1151 - 0 1151 55294 42 1 0 24 1 0 27 1 0 51 4 3 9 8 9 41 1 0 3 0 2 47 2 33 13 15 14 13 50 51 22 10 14 27 35 39 38 63 62 23 0 12 23 24 40 59 7 8 108 8 5 61 1 0 28 1 0 102 11 19 79 chain 15265 chr9 141213431 + 141048337 141048512 L1PA3long 6157 + 5982 6157 140587 175 chain 53385 chr9 141213431 + 141057904 141058483 L1PA3long 6157 - 410 989 56775 579 chain 7889 chr9 141213431 + 141064254 141064378 L1MA2 4263 + 3980 4097 171734 78 16 9 30 chain 237186 chr9 141213431 + 141078376 141080915 L1HS 6032 - 0 2539 16922 2539 chain 172276 chr9 141213431 + 141083476 141086102 L1PA7 6471 - 16 2369 21785 235 327 0 73 6 24 113 1 2 67 16 41 110 0 3 171 0 2 54 3 7 49 0 2 138 0 1 59 2 1 142 0 2 5 2 0 180 5 7 4 1 0 64 5 1 33 7 8 8 1 0 149 1 2 148 1 3 5 2 0 54 0 1 385 chain 48230 chr9 141213431 + 141104542 141105135 LTR10C 591 + 0 591 60292 15 0 5 489 8 0 60 1 2 20 chain 20430 chr9 141213431 + 141140496 141140779 AluSp 311 + 2 286 125815 51 12 14 166 7 6 47 chain 48609 chr9 141213431 + 141152832 141153431 MER11C 1089 - 0 599 60028 11 2 1 478 12 13 96 chain 168768 chr10 135534747 + 75251 77878 L1PA7 6471 + 4102 6455 22189 385 5 6 49 2 0 5 1 3 112 12 16 20 1 2 149 1 0 8 7 8 33 5 1 64 1 0 4 1 0 4 0 3 176 6 4 5 0 2 142 2 1 198 0 2 51 1 5 62 0 2 292 0 25 67 1 2 112 7 25 59 333 5 244 chain 539763 chr10 135534747 + 81423 87424 L1PA3long 6157 + 19 6152 2856 134 0 1 163 1 0 261 0 4 167 0 1 26 0 128 1423 1 2 368 1 0 601 1 0 2854 chain 6669 chr10 135534747 + 100340 100418 L1MA2 4263 - 205 283 179911 78 chain 20381 chr10 135534747 + 100714 100972 AluSg7 307 - 25 284 125959 150 1 2 107 chain 89111 chr10 135534747 + 106188 107170 L1PA3long 6157 + 5168 6152 39963 282 0 1 510 0 1 190 chain 15836 chr10 135534747 + 116225 116400 L1PA3long 6157 - 0 175 138839 175 chain 24685 chr10 135534747 + 119308 119598 AluSp 311 + 10 297 106519 55 3 0 232 chain 24438 chr10 135534747 + 140927 141239 THE1D-int 1627 - 6 317 107871 26 7 0 9 3 9 267 chain 103688 chr10 135534747 + 144257 145891 HERVL-int 5654 - 4330 5654 35804 96 0 1 15 1 0 5 0 1 22 312 0 8 0 3 199 8 5 210 0 1 758 chain 321566 chr10 135534747 + 164878 168509 L1PA4 6152 - 6 3662 12537 107 0 1 730 0 4 532 6 26 2256 chain 51902 chr10 135534747 + 172488 173215 MER4A 717 + 0 717 57683 25 0 1 38 1 0 84 1 0 20 25 8 37 2 1 69 0 3 65 0 2 66 1 0 52 0 4 18 5 6 218 chain 7083 chr10 135534747 + 178131 178209 LTR12F 595 + 402 480 176871 78 chain 30417 chr10 135534747 + 192983 193365 L1PB3 3668 - 1599 1986 83655 157 0 2 169 0 3 56 chain 60929 chr10 135534747 + 195812 196487 L1P1 4361 - 477 1152 52376 675 chain 209171 chr10 135534747 + 196488 198934 L1P1 4361 + 442 2914 18553 98 0 2 277 0 17 260 0 1 31 0 1 299 0 2 6 3 1 945 0 4 438 0 1 89 chain 4681 chr10 135534747 + 200793 200880 5S 121 - 31 118 198743 44 10 0 8 4 14 21 chain 27781 chr10 135534747 + 233292 233589 AluYk11 308 + 0 297 93764 297 chain 65973 chr10 135534747 + 252784 253525 L1PA3long 6157 - 0 745 50071 54 1 5 686 chain 86832 chr10 135534747 + 253525 254486 L1PA3long 6157 + 4434 5400 40845 725 0 5 236 chain 25167 chr10 135534747 + 276134 276441 AluSx4 309 + 2 309 103925 307 chain 105620 chr10 135534747 + 311441 312660 L1PA5 6144 + 4924 6141 35345 81 0 1 273 6 1 11 0 4 317 0 1 518 3 0 10 chain 8536 chr10 135534747 + 327975 328065 5S 121 - 31 121 168100 90 chain 5594 chr10 135534747 + 341054 341120 MER41B 635 - 88 154 189148 66 chain 27414 chr10 135534747 + 341219 341530 AluYk4 311 + 0 311 94925 311 chain 10201 chr10 135534747 + 341562 341679 L1MA5A 2387 + 1716 1833 159617 117 chain 37528 chr10 135534747 + 341815 342245 L1PA5 6144 - 754 1185 72779 388 0 1 42 chain 66018 chr10 135534747 + 342245 342988 L1PA5 6144 + 5401 6144 50086 743 chain 26337 chr10 135534747 + 349453 349762 AluSp 311 - 4 311 98664 6 2 0 301 chain 2989 chr10 135534747 + 375940 376059 MER58A 224 + 45 189 225259 32 71 96 16 chain 7076 chr10 135534747 + 379780 379910 L1MB8 1703 - 620 755 176908 54 14 20 39 11 10 12 chain 17684 chr10 135534747 + 495535 495734 L1HS 6032 + 5833 6031 133737 185 1 0 13 chain 2920 chr10 135534747 + 500000 500031 LTR41B 718 - 678 709 226694 31 chain 364065 chr10 135534747 + 506536 513898 L1PA7 6471 + 1844 6465 11258 17 0 1 78 0 1 225 0 5 348 0 2 78 0 1 16 0 11 12 6 8 247 0 3 170 0 3 198 0 1 228 1 0 69 0 4 89 0 3 258 1 0 10 0 1 156 7 15 278 1 2 38 0 13 24 0 3 85 0 1 142 0 4 165 0 4 124 2 0 76 1 2 84 2 1 48 1 0 418 0 4 80 9 5 133 13 27 30 0 2 191 2823 0 51 8 7 321 chain 252524 chr10 135534747 + 510709 513482 L1PA2 6032 + 3248 6030 16102 1934 0 4 48 0 3 457 0 2 334 chain 29153 chr10 135534747 + 580611 580915 AluYb8 318 - 14 318 88303 304 chain 3176 chr10 135534747 + 656938 656973 MSTA 426 + 51 86 221399 35 chain 10043 chr10 135534747 + 754947 755057 L1PA4 6152 - 5 115 160360 110 chain 366749 chr10 135534747 + 791951 796051 L1PA3long 6157 + 54 6157 11194 99 0 1 210 0 1 13 0 2 138 4 1999 63 1 4 113 1 0 2209 0 1 1245 0 1 4 chain 5771 chr10 135534747 + 811457 811543 L1MA4A 3247 + 3022 3107 187432 9 0 1 6 1 0 57 2 0 5 0 1 6 chain 21747 chr10 135534747 + 814529 814795 AluSz6 309 + 35 301 121218 266 chain 41184 chr10 135534747 + 843304 843933 THE1B-int 1605 - 911 1556 67664 217 1 2 4 1 0 21 37 20 26 5 9 87 12 16 38 0 1 55 10 34 115 chain 14908 chr10 135534747 + 844352 844645 THE1B 368 - 64 367 141612 62 1 0 12 1 0 16 1 5 9 0 3 15 2 7 6 1 0 47 67 68 53 chain 26690 chr10 135534747 + 877971 878282 AluYk4 311 - 9 311 97353 16 9 0 286 chain 15665 chr10 135534747 + 879086 879299 MER30 238 - 1 213 139380 5 0 1 34 3 0 59 2 3 110 chain 3571 chr10 135534747 + 903373 903412 MER39B 650 + 8 47 214122 39 chain 20010 chr10 135534747 + 908457 908709 AluY 311 + 39 294 127111 87 0 1 139 1 3 25 chain 9830 chr10 135534747 + 958131 958328 MER30 238 - 0 192 161449 15 0 1 20 4 15 47 5 1 7 19 0 9 4 0 12 3 13 52 chain 4785 chr10 135534747 + 964151 964234 LTR23 429 + 282 384 197515 21 15 34 47 chain 24128 chr10 135534747 + 964742 965028 AluY 311 + 8 290 109592 110 4 0 172 chain 5595 chr10 135534747 + 1018300 1018402 MSTD 398 + 262 363 189131 65 21 20 16 chain 23853 chr10 135534747 + 1080159 1080430 AluY 311 + 26 298 111166 149 1 2 121 chain 25433 chr10 135534747 + 1112656 1113010 THE1B 368 - 0 368 102532 171 2 0 25 7 6 23 0 4 34 2 0 41 5 20 44 chain 16844 chr10 135534747 + 1121220 1121431 L1PA7 6471 - 1 208 136005 12 3 0 146 1 0 49 chain 22192 chr10 135534747 + 1155384 1155669 AluSp 311 + 0 295 119385 43 0 15 204 13 8 25 chain 6861 chr10 135534747 + 1180411 1180519 MLT2B1 522 + 404 522 178496 41 18 28 49 chain 18603 chr10 135534747 + 1238618 1238886 AluY 311 + 9 286 131212 22 0 1 21 18 27 53 2 0 6 4 5 142 chain 14109 chr10 135534747 + 1265038 1265227 MSTA 426 + 218 426 144177 18 8 27 163 chain 533468 chr10 135534747 + 1267358 1273495 L1PA4 6152 - 0 6152 3778 151 0 5 7 6 1 169 2 1 125 0 2 378 1 0 5 0 4 81 1 0 1138 6 0 552 2 1 306 1 0 400 0 10 541 0 5 413 0 1 93 1 2 498 0 1 226 1 0 294 7 6 37 1 11 112 1 0 105 17 11 56 1 2 402 chain 193034 chr10 135534747 + 1287397 1289561 L1PA4 6152 - 9 2181 19764 24 2 0 818 1 2 658 0 5 278 0 4 383 chain 8404 chr10 135534747 + 1293204 1293588 L1MC1 2226 + 1798 2149 168823 21 31 29 8 0 3 26 23 17 15 1 0 20 62 60 30 1 0 20 47 36 20 38 26 6 1 0 14 chain 360334 chr10 135534747 + 1300281 1304338 L1PA2 6032 + 1936 6014 11354 215 1 6 34 0 4 206 0 1 649 0 1 262 1 0 518 3 2 1348 0 4 149 0 8 671 chain 83897 chr10 135534747 + 1304375 1305345 L1PA4 6152 + 5175 6145 41953 124 1 2 30 0 1 87 7 1 15 0 4 706 chain 92669 chr10 135534747 + 1317721 1318764 L1PA4 6152 - 18 1076 38764 158 0 1 674 1 0 187 0 15 23 chain 121385 chr10 135534747 + 1318764 1320117 L1P1 4361 + 2444 3800 30568 810 0 3 543 chain 548136 chr10 135534747 + 1344211 1350287 L1PA2 6032 + 2 6031 1688 255 1 0 107 0 1 1357 0 4 843 1 0 417 25 0 975 6 0 676 22 0 545 0 4 5 1 0 840 chain 28239 chr10 135534747 + 1385370 1385928 L1PA15 4387 + 3827 4356 92162 60 13 11 34 1 0 95 10 37 18 35 0 22 4 3 23 1 0 54 2 1 10 0 2 6 21 14 49 7 4 44 3 1 9 10 5 27 chain 27616 chr10 135534747 + 1391210 1391604 LTR7 482 + 0 471 94306 69 8 46 58 3 0 51 9 41 50 1 11 145 chain 274548 chr10 135534747 + 1391617 1395175 HERVH-int 3825 + 0 3825 14948 158 1 0 110 0 1 64 206 462 279 6 14 7 0 2 46 0 9 34 8 1 39 15 0 197 0 1 5 9 0 226 4 1 123 2 4 223 0 4 96 0 2 189 0 1 51 0 4 24 8 17 692 0 3 736 chain 48816 chr10 135534747 + 1433066 1433665 LTR71B 605 + 0 605 59867 123 9 18 265 3 0 199 chain 46402 chr10 135534747 + 1476593 1477197 PABL_A 660 + 0 660 61687 71 10 19 157 0 44 61 0 1 51 0 1 176 0 1 78 chain 28675 chr10 135534747 + 1494638 1495001 L1PA7 6471 + 6109 6466 90430 167 12 5 124 0 1 60 chain 99422 chr10 135534747 + 1578898 1580173 L1PA8 5853 + 4585 5853 36919 87 3 4 334 2 0 83 0 1 470 1 0 44 2 0 74 1 0 11 10 9 42 1 0 16 9 8 85 chain 59090 chr10 135534747 + 1605827 1606474 L1PA3long 6157 - 0 647 53337 647 chain 45026 chr10 135534747 + 1606474 1606962 L1PA3long 6157 + 5015 5503 63026 488 chain 10437 chr10 135534747 + 1628263 1628385 MER4A1_ 611 + 472 594 158541 122 chain 13111 chr10 135534747 + 1739103 1739277 MER30 238 + 46 238 147803 12 0 3 46 4 19 112 chain 17080 chr10 135534747 + 1757047 1757236 L1PA4 6152 - 0 189 135378 189 chain 25017 chr10 135534747 + 1792397 1792664 AluY 311 + 43 311 104697 89 0 1 178 chain 213870 chr10 135534747 + 1809272 1811596 L1PA2 6032 - 1642 3967 18238 1225 0 1 1099 chain 140039 chr10 135534747 + 1811596 1813118 L1PA2 6032 + 4510 6032 26124 1522 chain 6592 chr10 135534747 + 1817602 1817684 HSMAR1 1287 + 1205 1287 180525 82 chain 130396 chr10 135534747 + 1825526 1827134 L1PA7 6471 - 1 1604 27989 150 7 0 6 9 16 669 5 7 592 19 14 67 2 0 82 chain 13466 chr10 135534747 + 1869033 1869191 MER11B 1079 - 921 1079 146465 158 chain 11183 chr10 135534747 + 1884362 1884487 L1PA5 6144 + 6014 6139 155498 125 chain 4681 chr10 135534747 + 1896857 1896910 L1PA8 5853 + 5800 5853 198747 53 chain 81305 chr10 135534747 + 1930087 1931285 L1PB1 5432 - 10 1182 43041 18 1 0 13 1 0 22 1 0 23 11 9 5 1 0 5 2 0 19 36 23 4 1 0 45 1 0 17 1 0 52 16 10 10 1 0 13 1 0 20 13 11 467 17 14 288 4 14 24 0 1 45 chain 26527 chr10 135534747 + 1952628 1952929 L1PA4 6152 - 179 476 97942 90 4 0 207 chain 14591 chr10 135534747 + 1952945 1953116 L1PA4 6152 + 5984 6151 142623 99 4 0 68 chain 29054 chr10 135534747 + 2001622 2001942 L1PA4 6152 + 5831 6151 88737 320 chain 9416 chr10 135534747 + 2012426 2012542 Charlie3 2679 + 2322 2438 163481 116 chain 45085 chr10 135534747 + 2025743 2026296 L1PA7 6471 - 6 582 62959 136 1 0 111 2 1 111 9 34 183 chain 24107 chr10 135534747 + 2051556 2051911 THE1B 368 - 0 368 109708 176 3 1 12 0 1 9 1 0 76 34 49 44 chain 22868 chr10 135534747 + 2061045 2061354 L1P3 4156 - 17 323 116236 24 16 13 269 chain 108125 chr10 135534747 + 2070060 2071299 L1PA5 6144 + 4895 6126 34679 4 0 1 391 1 0 680 8 0 20 1 0 4 1 2 129 chain 6347 chr10 135534747 + 2073078 2073200 L1MC3 1789 - 1399 1519 182404 53 34 32 35 chain 14624 chr10 135534747 + 2097648 2097822 L1PA7 6471 - 12 186 142509 174 chain 22637 chr10 135534747 + 2105489 2105844 THE1B 368 - 2 368 117391 37 4 1 119 45 44 101 5 20 44 chain 22081 chr10 135534747 + 2134987 2135351 THE1B 368 + 0 368 119883 172 1 0 18 73 78 100 chain 20036 chr10 135534747 + 2167437 2167663 L1PA5 6144 + 5918 6144 127021 226 chain 7211 chr10 135534747 + 2227531 2227625 L1PA5 6144 - 0 89 175992 13 5 0 76 chain 51657 chr10 135534747 + 2231388 2231978 LTR10C 591 + 0 591 57859 330 0 1 260 chain 22836 chr10 135534747 + 2244155 2244411 L1PA4 6152 + 5896 6151 116414 113 1 0 142 chain 39428 chr10 135534747 + 2246475 2246975 MER41A 554 + 0 508 70121 155 1 0 252 1 5 54 0 5 37 chain 19958 chr10 135534747 + 2280406 2280736 THE1C 375 - 33 375 127278 100 58 69 58 5 6 109 chain 94604 chr10 135534747 + 2296266 2297288 L1PA2 6032 + 5009 6032 38185 8 0 1 1014 chain 16746 chr10 135534747 + 2336493 2336716 L1PA8 5853 + 5634 5853 136268 45 1 0 9 1 0 52 2 1 19 2 1 92 chain 5750 chr10 135534747 + 2364249 2364319 LTR9 672 - 24 95 187632 23 0 1 47 chain 26114 chr10 135534747 + 2364329 2364633 AluY 311 + 0 300 99557 102 0 1 23 5 0 174 chain 43548 chr10 135534747 + 2367235 2367784 MLT2A2 560 + 0 560 64743 180 1 0 144 0 1 70 7 18 147 chain 29941 chr10 135534747 + 2379484 2379798 AluYb8 318 - 4 318 84998 314 chain 40470 chr10 135534747 + 2411340 2411791 L1PA3long 6157 + 5699 6150 68639 451 chain 20178 chr10 135534747 + 2462799 2463140 THE1B 368 + 0 368 126598 44 0 15 43 2 3 68 1 0 27 2 0 18 7 22 32 41 40 56 chain 4068 chr10 135534747 + 2495333 2495379 MADE1 96 + 0 46 206343 46 chain 6150 chr10 135534747 + 2519906 2520029 MER57A1 433 - 0 112 183986 57 41 30 25 chain 152210 chr10 135534747 + 2533223 2534920 L1PA4 6152 - 18 1715 24309 130 1 6 4 5 0 1557 chain 5322 chr10 135534747 + 2559558 2559625 L1MB1 2102 - 143 208 191801 18 2 0 47 chain 10080 chr10 135534747 + 2610924 2611041 L1PA4 6152 + 6029 6146 160178 117 chain 24744 chr10 135534747 + 2620275 2620575 AluYk4 311 + 3 304 106204 195 1 2 104 chain 8710 chr10 135534747 + 2637616 2637719 THE1B 368 + 2 105 167145 103 chain 42518 chr10 135534747 + 2693523 2694243 L1PB1 5432 - 2 682 65995 8 2 0 18 1 0 12 1 0 15 56 50 28 10 0 3 3 0 16 1 0 44 1 0 15 2 1 53 17 11 9 1 0 9 1 0 24 1 0 8 0 3 60 26 18 275 chain 23709 chr10 135534747 + 2764234 2764526 AluY 311 + 10 298 111985 129 7 4 7 0 3 131 4 0 14 chain 47358 chr10 135534747 + 2766986 2767614 L1PA8 5853 - 0 622 60931 93 2 1 15 1 0 43 25 23 70 2 0 44 1 0 269 0 1 63 chain 22957 chr10 135534747 + 2787551 2787825 AluSc5 308 - 34 308 115819 274 chain 205176 chr10 135534747 + 2809747 2812478 L1PB1 5432 + 2718 5418 18844 124 3 0 184 0 1 49 5 6 183 0 1 317 0 1 1030 9 7 11 6 2 69 0 2 89 1 0 9 42 47 252 13 12 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 45 1 0 15 1 0 4 1 0 5 13 3 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 4765 chr10 135534747 + 2831237 2831315 MADE1 96 - 2 96 197752 49 11 27 18 chain 92114 chr10 135534747 + 2848157 2849161 SVA_E 1901 - 1 1901 38931 541 0 900 135 3 0 179 1 0 145 chain 33253 chr10 135534747 + 2922143 2922573 L1PA7 6471 - 14 445 78799 129 1 0 12 18 20 270 chain 17774 chr10 135534747 + 2932756 2932958 L1PA2 6032 + 5835 6032 133494 186 5 0 11 chain 30133 chr10 135534747 + 2983748 2984153 L1PA8 5853 + 5445 5853 84368 117 1 0 48 2 0 68 2 1 61 2 1 19 2 1 52 0 9 31 chain 26337 chr10 135534747 + 3002029 3002399 L1PA8 5853 + 5489 5853 98665 67 9 8 41 6 4 73 1 0 6 1 0 55 1 0 17 2 1 4 0 1 87 chain 17818 chr10 135534747 + 3007219 3007460 MER57A1 433 - 0 252 133342 143 0 2 8 1 0 36 0 1 8 2 0 35 0 11 8 chain 32232 chr10 135534747 + 3021742 3022178 PABL_A 660 - 8 513 80468 83 6 5 83 0 23 96 4 5 4 0 1 73 0 45 87 chain 47709 chr10 135534747 + 3034421 3035053 PABL_A 660 + 0 660 60687 14 0 15 52 0 9 33 0 1 78 1 2 357 9 8 60 4 7 24 chain 171057 chr10 135534747 + 3037756 3040219 HERVH-int 3825 - 1107 3780 21936 300 33 32 606 0 1 123 4 1 78 5 0 146 9 0 12 2 1 107 0 2 85 7 0 5 6 0 25 49 52 347 115 349 26 22 21 65 2 1 255 17 21 12 chain 9080 chr10 135534747 + 3040272 3040372 LTR7Y 441 - 7 107 165162 100 chain 41096 chr10 135534747 + 3084255 3084719 L1PA3long 6157 - 0 463 67772 5 2 0 107 0 1 350 chain 25087 chr10 135534747 + 3093959 3094342 MER51B 395 - 14 394 104369 124 30 39 179 21 9 29 chain 82151 chr10 135534747 + 3103660 3104632 LTR5_Hs 974 + 0 974 42705 255 18 0 283 1 2 219 1 20 195 chain 43325 chr10 135534747 + 3117009 3117518 MER9a1 513 - 0 513 65005 71 0 2 227 0 2 211 chain 10731 chr10 135534747 + 3118119 3118239 AluYb8 318 + 198 316 157276 113 2 0 5 chain 37789 chr10 135534747 + 3130187 3130619 L1PA5 6144 - 0 429 72432 11 3 1 328 1 0 89 chain 5442 chr10 135534747 + 3182497 3182566 Tigger7 736 - 605 674 190591 69 chain 7231 chr10 135534747 + 3202711 3202793 MER44A 345 + 136 218 175885 82 chain 9106 chr10 135534747 + 3206659 3206784 MER85 139 - 0 138 165042 29 4 17 92 chain 34711 chr10 135534747 + 3229234 3229654 L1PA5 6144 - 1 416 76607 10 3 1 188 5 2 214 chain 6754 chr10 135534747 + 3240999 3241167 MLT1B 390 + 58 227 179291 63 69 70 36 chain 14176 chr10 135534747 + 3255200 3255356 L1PA5 6144 - 6 162 143968 156 chain 9373 chr10 135534747 + 3259685 3259862 MER30B 195 + 14 195 163698 40 33 41 53 9 5 42 chain 24464 chr10 135534747 + 3301147 3301443 AluY 311 + 6 298 107735 112 4 0 180 chain 6967 chr10 135534747 + 3339270 3339361 MSTA 426 + 0 93 177697 19 0 1 31 1 2 40 chain 103623 chr10 135534747 + 3360984 3362575 LTR12C 1709 - 0 1709 35824 84 1 0 85 199 0 128 0 4 180 20 13 82 0 129 50 0 196 280 20 14 185 20 13 236 0 9 21 chain 27322 chr10 135534747 + 3396665 3397038 THE1C 375 + 0 375 95200 47 23 23 115 0 2 188 chain 32222 chr10 135534747 + 3413981 3414380 L1PA7 6471 + 6047 6446 80482 131 0 1 119 11 10 138 chain 53427 chr10 135534747 + 3485619 3486334 MER4A 717 - 0 704 56742 6 1 0 446 4 0 142 11 5 88 0 1 4 1 0 12 chain 34496 chr10 135534747 + 3549789 3550427 L1PB1 5432 + 4844 5422 76916 259 73 11 24 2 1 5 1 0 12 21 16 48 14 16 45 1 0 15 1 0 4 2 0 9 8 0 17 3 25 19 1 0 21 1 0 13 1 0 18 chain 40839 chr10 135534747 + 3587053 3587578 MLT2A2 560 - 13 550 68119 30 3 4 97 11 22 384 chain 134796 chr10 135534747 + 3588160 3589706 L1PA5 6144 - 14 1556 27057 378 3 0 233 2 1 224 1 0 128 0 1 577 chain 20634 chr10 135534747 + 3593057 3593300 L1PA7 6471 + 6217 6468 125178 47 0 8 196 chain 16748 chr10 135534747 + 3596143 3596324 L1PA3long 6157 - 15 196 136266 181 chain 46314 chr10 135534747 + 3602840 3603364 L1PA5 6144 + 5620 6144 61760 524 chain 31772 chr10 135534747 + 3663298 3663838 L1PB1 5432 + 4905 5422 81210 33 4 13 152 13 11 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 2 1 42 1 0 16 1 0 4 2 0 11 8 0 11 2 0 10 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 8391 chr10 135534747 + 3722936 3723038 L1P1 4361 - 3358 3460 168899 102 chain 38555 chr10 135534747 + 3723038 3723502 L1PA4 6152 + 5684 6137 71359 244 17 6 203 chain 20638 chr10 135534747 + 3748146 3748556 L1PB1 5432 + 5042 5422 125161 61 9 11 20 1 0 13 1 0 7 20 14 52 2 1 15 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 chain 27853 chr10 135534747 + 3774355 3774713 THE1B 368 + 0 368 93513 44 0 15 110 1 0 22 5 1 176 chain 6100 chr10 135534747 + 3783597 3783767 MLT2B2 565 + 2 159 184413 15 0 2 44 81 66 30 chain 94724 chr10 135534747 + 3813459 3814488 L1PA2 6032 - 0 1028 38159 23 1 0 1005 chain 13550 chr10 135534747 + 3814488 3814633 L1PA2 6032 + 4857 5002 146165 145 chain 3109 chr10 135534747 + 3888273 3888310 MADE1 96 - 1 38 222761 37 chain 103047 chr10 135534747 + 3995405 3996729 L1PA8 5853 + 4524 5853 35976 142 1 0 345 4 2 86 1 10 414 0 6 35 2 1 43 2 0 70 2 1 11 1 0 49 3 2 21 1 0 91 chain 25910 chr10 135534747 + 4037355 4037692 L1PA8 5853 - 0 330 100372 93 1 0 19 2 1 47 1 0 11 1 0 74 2 0 44 1 0 41 chain 9000 chr10 135534747 + 4040430 4040544 MER30 238 - 0 111 165595 48 3 0 63 chain 24940 chr10 135534747 + 4155402 4155711 AluY 311 + 4 311 105106 90 1 4 20 6 0 14 0 1 178 chain 33139 chr10 135534747 + 4182039 4182490 MLT2A1 477 + 0 477 79003 86 0 3 51 0 1 27 1 5 212 3 1 6 19 0 8 0 39 38 chain 20068 chr10 135534747 + 4221672 4221924 AluSg7 307 + 38 294 126928 94 2 0 104 0 6 52 chain 23784 chr10 135534747 + 4226474 4226956 L1PB1 5432 + 4983 5430 111569 120 5 4 7 1 0 24 10 8 12 15 9 44 13 12 13 1 0 45 1 0 8 1 0 4 27 15 19 8 5 14 2 0 24 1 0 14 0 1 6 1 0 13 1 0 16 2 0 10 chain 25715 chr10 135534747 + 4278981 4279473 L1PB1 5432 - 28 487 101233 12 2 1 21 1 0 7 20 17 15 50 35 16 1 0 44 1 0 14 3 2 53 2 0 8 5 1 12 1 0 12 2 0 18 15 13 32 0 1 125 chain 38539 chr10 135534747 + 4279475 4280012 L1PB1 5432 + 4411 4920 71382 165 0 1 48 24 1 58 7 0 189 2 3 44 chain 28857 chr10 135534747 + 4310649 4311001 THE1A 353 - 1 352 89636 242 1 0 109 chain 108251 chr10 135534747 + 4455601 4456820 L1PA4 6152 - 18 1241 34631 951 0 3 68 0 1 200 chain 14913 chr10 135534747 + 4482379 4482552 L1PA3long 6157 + 5980 6153 141595 173 chain 56619 chr10 135534747 + 4488197 4488950 L1PA8A 6298 + 5542 6290 54763 38 4 1 108 1 2 78 14 3 144 0 2 53 0 1 183 0 1 89 11 15 30 chain 3431 chr10 135534747 + 4558409 4558460 MADE1 96 + 39 93 216548 6 0 3 11 1 0 6 0 1 27 chain 22046 chr10 135534747 + 4586822 4587147 L1PA8 5853 + 5539 5853 120038 23 1 0 37 1 0 9 2 0 71 1 0 14 4 0 43 10 9 15 1 0 93 chain 23500 chr10 135534747 + 4620912 4621187 L1PA5 6144 + 5857 6132 113129 98 1 0 5 0 1 171 chain 81666 chr10 135534747 + 4640070 4640967 L1PA3long 6157 + 5261 6157 42903 747 1 0 149 chain 22366 chr10 135534747 + 4669533 4669905 THE1C 375 - 0 373 118647 18 3 0 5 0 3 132 53 50 28 11 15 122 chain 3379 chr10 135534747 + 4758567 4758605 L1PB3 3668 - 226 264 217509 38 chain 16323 chr10 135534747 + 4778594 4778843 L1PA8 5853 + 5608 5853 137429 69 1 0 10 2 1 52 2 1 19 16 15 78 chain 17320 chr10 135534747 + 4794336 4794565 L1PA8 5853 - 275 504 134733 14 13 12 30 0 1 172 chain 19561 chr10 135534747 + 4794565 4794852 L1PA8 5853 + 5569 5853 128487 40 2 0 5 0 4 64 1 0 7 1 0 4 1 0 47 2 1 18 2 1 93 chain 22219 chr10 135534747 + 4798137 4798435 L1PA8 5853 - 0 289 119265 92 2 1 19 2 1 50 2 1 8 1 0 9 3 0 64 2 0 44 chain 4377 chr10 135534747 + 4802813 4802862 MER85 139 + 2 51 202228 49 chain 3642 chr10 135534747 + 4818144 4818403 L1MC3 1789 + 121 379 212942 17 197 196 45 chain 9322 chr10 135534747 + 4835044 4835147 L1PA3long 6157 - 0 103 163948 103 chain 226742 chr10 135534747 + 4835786 4838481 L1PA7 6471 - 2 2713 17499 10 2 0 174 0 3 145 1 0 385 0 1 41 0 1 92 0 3 74 0 1 378 0 7 168 0 1 500 0 4 117 0 1 158 3 0 227 1 0 148 0 1 71 chain 56013 chr10 135534747 + 4847957 4848634 L1PA8A 6298 + 5613 6290 55116 677 chain 113227 chr10 135534747 + 4886232 4887672 LTR12C 1709 - 0 1709 33305 84 1 0 397 11 4 106 4 2 4 1 0 183 0 280 38 0 1 143 4 3 422 13 4 8 0 9 21 chain 35799 chr10 135534747 + 4895868 4896680 MER41A 554 + 0 529 75135 128 0 1 50 4 18 68 15 34 131 319 0 61 7 9 29 chain 27256 chr10 135534747 + 4899396 4899825 MSTA 426 + 0 425 95411 133 3 0 10 0 7 48 0 3 6 67 56 162 chain 186793 chr10 135534747 + 4904923 4906998 L1P1 4361 + 2248 4328 20351 183 0 4 1277 0 1 397 0 2 38 1 0 155 1 0 23 chain 11307 chr10 135534747 + 4908661 4908798 LTR8 732 - 7 144 155039 137 chain 6014 chr10 135534747 + 4921150 4921365 L1MC2 1988 - 0 226 185094 17 93 79 44 9 29 12 3 5 31 0 3 6 chain 39096 chr10 135534747 + 4921365 4921911 MLT2A2 560 - 0 556 70608 52 11 12 79 0 11 193 8 7 26 12 11 165 chain 85789 chr10 135534747 + 4938104 4939089 L1PA4 6152 - 1451 2449 41168 127 0 5 525 1 0 288 1 10 43 chain 127696 chr10 135534747 + 4939089 4940525 L1PA4 6152 + 4712 6152 28644 465 3 1 958 0 6 10 chain 117296 chr10 135534747 + 4941207 4942563 L1PA6 6164 + 4756 6116 32026 555 12 16 789 chain 5878 chr10 135534747 + 4942582 4942655 L1MA2 4263 - 1252 1325 186390 73 chain 3968 chr10 135534747 + 4957331 4957379 L1PA16 3655 + 3483 3531 207874 48 chain 3061 chr10 135534747 + 4966007 4966043 MER50 708 + 147 184 223793 27 0 1 9 chain 106123 chr10 135534747 + 4978791 4980137 LTR12C 1709 - 0 1709 35229 82 1 0 69 1 0 330 11 4 91 0 47 72 0 278 237 0 1 107 10 53 42 4 5 23 10 12 256 chain 63460 chr10 135534747 + 5002116 5002823 L1PA4 6152 - 1 707 51259 226 0 1 26 2 0 453 chain 36975 chr10 135534747 + 5012757 5013165 L1PA2 6032 + 5624 6032 73544 408 chain 44506 chr10 135534747 + 5028323 5028835 MER9a2 513 - 0 513 63574 214 0 1 298 chain 6295 chr10 135534747 + 5071403 5071515 L1PB4 2604 - 165 277 182847 9 1 0 23 1 3 17 11 10 50 chain 102162 chr10 135534747 + 5074049 5075275 LTR12C 1709 - 237 1709 36220 244 0 4 106 14 256 25 1 0 418 4 5 150 0 1 240 1 0 23 chain 29727 chr10 135534747 + 5077321 5077665 LTR14A 344 + 0 344 85733 344 chain 127589 chr10 135534747 + 5077869 5079536 HERVK14-int 1672 + 1 1665 28676 29 1 0 11 1 0 49 1 0 155 1 4 21 1 0 34 2 1 34 2 0 227 2 1 46 1 0 68 1 0 64 1 3 71 1 0 162 2 1 16 0 10 49 9 7 8 2 0 28 6 5 23 0 1 7 2 0 172 0 2 87 0 4 15 1 0 64 6 4 26 2 0 9 1 0 36 0 1 103 1 0 6 chain 20629 chr10 135534747 + 5080503 5080754 LTR13A 966 - 710 966 125195 128 1 2 60 0 4 62 chain 79159 chr10 135534747 + 5088879 5089832 LTR13A 966 - 0 966 43974 83 1 0 437 0 13 304 0 1 128 chain 113398 chr10 135534747 + 5094171 5095855 LTR12C 1709 - 0 1709 33253 63 0 4 17 5 4 206 3 7 178 22 15 8 24 0 78 0 53 118 50 0 121 1 0 367 1 3 5 1 0 81 0 43 42 46 47 30 6 7 105 73 74 33 chain 3878 chr10 135534747 + 5094893 5094940 LTR12C 1709 - 544 591 82326 47 chain 398946 chr10 135534747 + 5097064 5101935 HERV9-int 5642 - 830 5642 10139 293 4 8 168 0 1 666 12 13 214 0 10 1297 0 2 267 0 1 253 0 1 279 2 0 232 84 0 194 5 1 121 16 15 246 0 8 356 0 4 162 chain 862 chr10 135534747 + 5100755 5100804 HERV9-int 5642 - 4535 4584 190985 49 chain 50903 chr10 135534747 + 5102034 5102744 LTR12C 1709 - 0 809 58368 84 8 7 203 3 7 178 13 6 20 0 1 4 23 0 64 5 52 79 0 78 26 chain 28797 chr10 135534747 + 5102744 5103103 LTR12C 1709 - 1009 1413 87254 234 0 2 83 0 43 42 chain 15516 chr10 135534747 + 5103208 5103398 LTR12C 1709 - 1519 1709 139838 190 chain 9931 chr10 135534747 + 5109380 5109916 MER51-int 1546 - 1135 1515 160926 23 338 203 34 1 0 63 41 21 36 chain 4286 chr10 135534747 + 5111062 5111115 MER41-int 2638 - 2473 2526 203404 53 chain 6275 chr10 135534747 + 5114904 5115141 MER67C 710 + 404 615 182973 28 117 92 48 10 9 9 0 5 6 5 0 14 chain 374355 chr10 135534747 + 5125270 5129471 L1PA4 6152 - 0 4215 10945 13 0 1 159 4 3 808 0 1 153 0 1 896 0 2 396 0 1 1484 0 7 46 0 2 242 chain 384355 chr10 135534747 + 5151877 5156271 L1PA3long 6157 + 64 6142 10635 10 0 1 537 3 1 179 41 1721 663 0 1 85 0 1 4 1 0 1626 0 1 144 1 2 270 0 4 477 2 0 351 chain 88688 chr10 135534747 + 5157780 5159028 HERVL-int 5654 - 0 2010 40114 94 0 5 119 1 8 20 0 1 40 0 3 94 28 23 20 0 1 65 0 1 59 10 28 138 12 17 178 1 2 28 6 5 64 0 729 193 8 5 70 chain 3512 chr10 135534747 + 5165751 5165795 MER5A 189 + 32 76 215184 44 chain 208800 chr10 135534747 + 5179442 5182968 L1PA6 6164 + 3652 6134 18581 50 0 1 283 0 23 79 1094 0 45 10 22 208 1 5 143 0 5 647 0 5 966 chain 77265 chr10 135534747 + 5179874 5180942 MER11A 1151 - 14 1145 44846 216 0 1 37 18 0 21 8 15 11 25 1 155 0 1 140 0 1 94 0 1 145 27 23 47 1 0 74 0 99 49 chain 101605 chr10 135534747 + 5186259 5187380 L1PA3long 6157 - 1193 2318 36323 606 0 4 515 chain 104540 chr10 135534747 + 5187380 5188544 L1PA3long 6157 + 4988 6152 35611 319 1 0 682 1 0 80 0 2 81 chain 136571 chr10 135534747 + 5208158 5209740 L1PA4 6152 + 4547 6140 26727 757 0 5 683 8 6 8 0 7 120 0 1 6 chain 13955 chr10 135534747 + 5211073 5211232 LTR19B 566 - 399 558 144733 159 chain 549271 chr10 135534747 + 5216933 5223094 L1PA3long 6157 - 0 6151 1543 160 8 1 618 1 0 1194 0 1 393 1 0 1395 2 6 63 2 0 378 1 0 164 0 1 323 0 5 956 9 0 493 chain 9324 chr10 135534747 + 5244945 5245067 L1PB2 3958 - 2197 2320 163925 25 1 2 96 chain 550958 chr10 135534747 + 5264651 5270808 L1PA3long 6157 + 6 6152 1320 403 0 1 116 4 0 180 0 2 1086 4 6 526 1 0 966 0 1 713 0 2 1502 0 1 119 19 3 374 0 1 144 chain 482355 chr10 135534747 + 5276464 5282843 L1PA7 6471 + 0 6456 7647 152 0 2 246 0 5 115 2 3 47 1 0 92 0 2 7 1 0 107 0 6 50 1 0 80 0 3 51 0 3 195 8 18 47 1 3 115 6 5 231 5 6 112 0 2 54 1 0 10 0 4 123 5 7 68 1 0 16 4 6 172 1 6 357 5 6 63 10 9 25 2 1 55 10 8 54 0 3 177 1 0 167 0 4 306 3 7 36 0 4 37 81 8 46 7 12 20 0 15 99 0 4 115 0 4 23 1 0 162 5 12 179 0 2 111 0 2 5 0 5 204 1 3 72 1 0 72 4 11 67 6 7 53 0 2 255 1 4 43 0 2 19 1 0 123 0 4 12 0 2 234 0 3 20 1 7 69 0 4 6 1 0 14 0 5 56 11 17 11 7 10 68 0 2 73 0 2 343 1 0 89 1 0 21 0 1 4 1 0 35 0 3 90 chain 3585 chr10 135534747 + 5285688 5285808 LTR48B 642 - 361 482 213901 20 31 30 21 10 11 19 7 8 12 chain 566401 chr10 135534747 + 5287317 5293348 L1HS 6032 + 1 6032 124 6031 chain 4426 chr10 135534747 + 5295770 5295821 MLT1A0 366 + 89 140 201642 51 chain 296149 chr10 135534747 + 5296759 5300258 L1PA5 6144 + 2629 6143 13635 123 1 0 193 0 2 132 0 4 93 5 2 71 1 6 254 1 0 34 0 1 137 4 0 160 11 12 183 2 1 304 0 4 801 0 5 117 4 8 18 3 0 570 1 0 34 0 3 242 chain 172383 chr10 135534747 + 5305554 5307782 MER4-int 2692 - 457 2691 21773 112 1 0 110 1 0 61 0 1 6 10 9 36 0 1 184 0 1 261 2 0 214 6 9 31 0 1 107 1 4 169 0 3 75 0 1 44 1 14 652 19 13 16 8 1 59 10 8 21 1 0 10 chain 23874 chr10 135534747 + 5348177 5348530 THE1B 368 - 0 368 111066 31 4 1 43 1 0 72 1 4 12 0 4 5 2 0 23 9 8 106 0 15 44 chain 18120 chr10 135534747 + 5357463 5357664 L1PA4 6152 - 488 689 132540 201 chain 34542 chr10 135534747 + 5357664 5358053 L1PA4 6152 + 5746 6140 76842 45 0 6 95 1 0 248 chain 9853 chr10 135534747 + 5363674 5363781 SVA_A 1864 + 1757 1864 161330 107 chain 37470 chr10 135534747 + 5375093 5375519 L1PA7 6471 + 6046 6468 72856 256 1 0 157 3 0 9 chain 49575 chr10 135534747 + 5387028 5387583 L1PA4 6152 + 5593 6148 59341 555 chain 5857 chr10 135534747 + 5390707 5390815 MER5A1 166 - 43 165 186620 43 23 37 42 chain 35845 chr10 135534747 + 5452633 5453091 LTR12F 595 - 12 595 75069 141 1 0 40 0 1 134 0 130 33 6 1 103 chain 23728 chr10 135534747 + 5462548 5462833 AluSc5 308 - 5 285 111893 19 5 0 261 chain 25831 chr10 135534747 + 5512730 5513140 LTR7 482 + 0 482 100741 51 7 8 10 6 95 21 51 0 39 5 37 104 1 2 115 chain 319593 chr10 135534747 + 5513142 5517323 HERVH-int 3825 + 0 3825 12611 35 2 0 66 1 3 428 5 0 38 1 0 10 1 0 24 28 0 14 1 0 12 4 1 10 17 17 43 1 0 18 0 1 7 1 0 52 0 1 4 2 0 647 9 0 44 1 0 78 310 0 19 5 0 98 0 1 5 0 3 407 8 13 1356 0 1 369 chain 1231 chr10 135534747 + 5513754 5513781 HERVH-int 3825 + 656 683 197011 27 chain 25815 chr10 135534747 + 5518567 5518975 LTR7 482 + 0 482 100810 54 4 5 10 29 17 46 2 53 39 5 37 44 0 1 59 1 2 115 chain 12490 chr10 135534747 + 5559534 5559693 MER87B 500 + 0 159 150292 159 chain 2737 chr10 135534747 + 5578824 5578887 Arthur1B 1073 - 985 1043 229663 28 17 13 4 1 0 13 chain 38686 chr10 135534747 + 5628343 5628991 MER4A1_ 611 + 0 611 71166 110 19 21 79 64 47 29 24 7 29 10 0 60 5 10 219 chain 5298 chr10 135534747 + 5667125 5667205 MADE1 96 - 0 96 192034 38 6 22 36 chain 25387 chr10 135534747 + 5680079 5680384 AluY 311 + 0 300 102751 126 5 0 174 chain 15040 chr10 135534747 + 5716003 5716324 MSTA 426 - 34 426 141200 75 3 24 26 37 62 17 52 80 41 4 1 66 chain 9710 chr10 135534747 + 5813336 5813495 MER30B 195 + 17 189 162039 35 11 12 22 1 16 51 3 0 36 chain 13110 chr10 135534747 + 5816135 5816319 MER50 708 + 514 696 147810 30 5 1 90 5 7 54 chain 64834 chr10 135534747 + 5819447 5820252 L1PA7 6471 + 5664 6467 50643 34 0 2 55 31 24 536 0 1 11 0 1 12 0 3 116 2 0 8 chain 118607 chr10 135534747 + 5825216 5826887 L1PBa 3878 - 1994 3691 31579 78 0 4 164 1 0 24 4 0 60 9 11 95 1 4 55 1 9 64 0 3 240 0 3 7 7 4 34 0 8 40 0 4 52 2 1 71 1 0 22 1 4 14 10 14 89 1 2 38 1 0 142 1 0 28 8 7 98 10 9 148 2 0 20 6 5 22 chain 24910 chr10 135534747 + 5833439 5833729 AluSp 311 + 11 308 105280 218 0 7 72 chain 17314 chr10 135534747 + 5884679 5884881 AluY 311 + 85 285 134746 41 2 0 159 chain 6732 chr10 135534747 + 5895673 5895746 tRNA-Val-GTA 73 - 0 73 179460 73 chain 219405 chr10 135534747 + 5905870 5908670 HERV9-int 5642 + 1144 4824 17925 48 0 1 110 110 115 79 0 2 80 16 10 122 2 1 1006 57 0 292 7 942 289 0 1 239 3 0 68 0 1 165 0 1 4 1 2 102 chain 45581 chr10 135534747 + 6047332 6047885 MER41A 554 + 0 554 62428 457 0 1 96 chain 26499 chr10 135534747 + 6049996 6050373 LTR7B 505 + 0 494 98044 108 0 10 53 19 87 53 1 42 88 14 13 20 0 1 5 2 0 14 chain 40327 chr10 135534747 + 6097416 6097868 SVA_F 1814 - 254 753 68839 379 7 5 38 0 49 28 chain 5861 chr10 135534747 + 6102337 6102417 L1PB1 5432 + 5346 5423 186576 24 1 0 22 1 0 12 1 0 19 chain 43351 chr10 135534747 + 6106592 6107135 L1PA8A 6298 - 8 549 64989 113 8 1 228 0 2 29 0 3 165 chain 17616 chr10 135534747 + 6115499 6115834 L1MA5A 2387 - 95 395 133948 58 79 48 31 2 0 42 0 1 4 1 0 39 1 0 36 1 0 41 chain 4632 chr10 135534747 + 6161383 6161698 L1MC3 1789 - 1313 1616 199275 30 74 53 16 10 12 30 122 133 6 3 0 5 1 0 18 chain 12051 chr10 135534747 + 6169201 6169414 MER1A 529 - 6 222 151979 26 0 15 7 43 31 137 chain 20303 chr10 135534747 + 6191585 6191824 7SK 245 + 0 239 126227 239 chain 29386 chr10 135534747 + 6235533 6235984 LTR7B 505 - 10 505 87133 41 14 13 76 1 0 85 0 2 26 37 68 67 3 13 12 0 3 89 chain 118256 chr10 135534747 + 6247937 6249389 SVA_D 2077 - 2 2015 31706 134 0 20 284 0 1 4 3 1 176 1 2 15 0 535 59 25 68 9 2 0 185 48 12 389 0 1 118 chain 2282 chr10 135534747 + 6248613 6248638 SVA_D 2077 - 1390 1415 156030 25 chain 3171 chr10 135534747 + 6248834 6248882 SVA_D 2077 - 1535 1583 153507 48 chain 3866 chr10 135534747 + 6252977 6253021 tRNA-Cys-TGY 72 - 28 72 209368 44 chain 23420 chr10 135534747 + 6292267 6292549 AluY 311 + 21 298 113540 87 5 1 24 1 0 165 chain 14910 chr10 135534747 + 6296540 6296755 MER47A 366 + 92 312 141605 93 0 6 90 16 15 16 chain 45036 chr10 135534747 + 6304926 6305450 MER9a2 513 - 0 513 63013 57 4 0 29 6 0 262 1 0 165 chain 7789 chr10 135534747 + 6319064 6319163 MSTA 426 + 7 121 172359 92 0 15 7 chain 22778 chr10 135534747 + 6322787 6323208 L1PB1 5432 - 10 389 116688 4 1 0 14 1 0 11 6 5 18 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 1 0 44 1 0 14 3 2 50 3 1 10 5 1 10 1 0 14 1 0 20 1 0 11 9 0 38 0 1 21 chain 7441 chr10 135534747 + 6325437 6325525 MLT2A2 560 - 258 346 174510 88 chain 13044 chr10 135534747 + 6329402 6329566 Tigger3a 397 + 162 326 148063 164 chain 206244 chr10 135534747 + 6330168 6332426 L1PA3long 6157 - 0 2259 18773 1491 0 1 767 chain 21550 chr10 135534747 + 6336288 6336586 THE1B 368 - 61 368 121966 67 1 0 10 1 0 4 8 12 13 0 3 29 1 0 129 0 5 35 chain 46620 chr10 135534747 + 6338321 6338943 MER41B 635 - 0 635 61523 167 23 22 121 0 3 195 15 26 101 chain 6917 chr10 135534747 + 6357254 6357355 MER41A 554 - 14 120 178068 58 8 13 35 chain 22388 chr10 135534747 + 6375475 6375824 THE1B 368 - 0 366 118549 125 35 45 29 1 0 16 21 29 122 chain 89602 chr10 135534747 + 6398876 6399890 L1PA3long 6157 - 0 1021 39780 138 0 7 107 2 1 387 1 3 136 1 0 242 chain 567350 chr10 135534747 + 6411597 6417629 L1HS 6032 - 0 6032 66 6032 chain 22023 chr10 135534747 + 6421400 6421746 THE1B 368 - 0 368 120127 49 0 10 117 2 0 23 1 0 57 53 68 44 chain 121736 chr10 135534747 + 6421754 6423308 THE1B-int 1605 - 8 1605 30466 137 0 1 391 0 3 175 7 13 426 0 25 57 5 1 305 0 12 51 chain 26173 chr10 135534747 + 6423308 6423657 THE1B 368 - 0 368 99314 49 1 8 119 3 1 22 1 0 114 0 15 40 chain 20678 chr10 135534747 + 6437423 6437748 LTR8 732 - 325 693 125040 59 42 69 117 0 6 32 4 10 49 0 4 22 chain 23257 chr10 135534747 + 6444020 6444307 L1PA7 6471 + 6170 6465 114407 188 0 11 90 3 0 6 chain 23533 chr10 135534747 + 6458550 6458889 L1PB2 3958 - 120 452 112943 63 1 0 17 4 0 7 4 6 27 1 0 36 2 1 64 1 0 79 1 0 32 chain 7902 chr10 135534747 + 6477571 6477775 MER30 238 - 5 237 171638 80 76 97 19 11 18 18 chain 480655 chr10 135534747 + 6490747 6496042 L1PA3long 6157 + 844 6156 7706 1548 0 4 156 1 0 148 0 5 1198 0 1 304 0 1 145 0 4 952 0 4 510 1 0 332 chain 10321 chr10 135534747 + 6517999 6518126 MER85 139 + 1 139 159027 90 1 12 36 chain 3794 chr10 135534747 + 6548396 6548440 U5 65 + 5 49 210466 44 chain 62278 chr10 135534747 + 6588433 6589118 L1PA3long 6157 - 1736 2425 51765 63 0 4 622 chain 30798 chr10 135534747 + 6589118 6589451 L1PA3long 6157 + 4419 4752 82870 333 chain 128279 chr10 135534747 + 6589451 6590854 L1PA3long 6157 + 4753 6157 28502 1349 0 1 54 chain 4030 chr10 135534747 + 6591477 6591539 MADE1 96 - 1 54 206928 46 9 0 7 chain 17425 chr10 135534747 + 6632447 6632812 L1PB1 5432 + 5085 5422 134445 18 1 2 10 3 0 23 1 0 9 16 11 8 0 1 53 2 1 16 1 0 43 1 0 16 3 0 9 53 41 24 1 0 21 1 0 13 1 0 18 chain 4717 chr10 135534747 + 6636996 6637149 L1MA8 2339 - 77 218 198313 5 1 0 24 8 7 9 3 1 21 49 41 33 chain 40700 chr10 135534747 + 6656485 6657202 L1PB1 5432 - 14 674 68301 14 1 0 9 0 6 19 1 0 24 2 0 14 1 0 4 7 5 10 8 0 13 2 0 4 1 0 16 1 0 43 1 0 17 1 0 53 17 11 9 1 0 9 1 0 24 13 11 50 10 10 23 0 6 7 40 0 79 0 1 71 0 1 97 chain 22428 chr10 135534747 + 6658818 6659102 L1PA5 6144 - 1 284 118349 10 3 1 140 8 9 123 chain 40870 chr10 135534747 + 6671540 6671991 LTR7 482 - 0 482 68062 187 0 31 264 chain 297126 chr10 135534747 + 6673250 6677052 HERVH-int 3825 - 0 3825 13576 141 0 2 344 8 218 1110 0 4 290 4 31 243 0 1 218 15 0 123 0 2 217 0 3 60 0 1 38 1 0 49 2 1 7 0 20 62 12 9 12 85 0 15 7 1 14 4 0 9 1 0 10 65 0 39 6 1 7 61 0 523 chain 4800 chr10 135534747 + 6676229 6676291 HERVH-int 3825 - 3108 3169 197364 20 1 0 41 chain 2135 chr10 135534747 + 6676393 6676416 HERVH-int 3825 - 3352 3375 216515 23 chain 39029 chr10 135534747 + 6677054 6677503 LTR7 482 - 0 482 70696 187 0 31 205 0 2 57 chain 25364 chr10 135534747 + 6680321 6680616 AluY 311 + 16 311 102859 116 0 1 172 1 0 6 chain 8674 chr10 135534747 + 6683582 6683680 L1PA4 6152 - 0 98 167337 98 chain 19582 chr10 135534747 + 6683681 6683892 L1PA4 6152 + 5739 5950 128425 211 chain 35307 chr10 135534747 + 6683936 6684406 MER4A1 472 + 0 472 75787 141 18 19 70 1 2 240 chain 27490 chr10 135534747 + 6690711 6691084 THE1C 375 - 0 375 94681 83 11 12 171 1 2 107 chain 8877 chr10 135534747 + 6703333 6703448 L1PB1 5432 + 5168 5281 166245 52 2 1 16 1 0 44 chain 114424 chr10 135534747 + 6703452 6705446 L1PA6 6164 + 4786 6151 32963 531 0 6 154 314 0 62 0 1 200 0 7 54 329 0 350 chain 12655 chr10 135534747 + 6717962 6718143 L1PA8 5853 - 44 221 149626 49 6 5 14 2 1 52 1 0 8 1 0 48 chain 106695 chr10 135534747 + 6718340 6719564 L1PA5 6144 + 4904 6128 35063 390 2 0 320 0 2 512 chain 23929 chr10 135534747 + 6740101 6740381 AluSc8 310 + 11 295 110762 121 0 3 79 0 1 80 chain 11896 chr10 135534747 + 6757866 6758040 L1PA8 5853 + 5679 5853 152619 61 2 1 19 1 0 71 1 3 19 chain 43123 chr10 135534747 + 6785025 6785649 LTR71B 605 - 0 605 65266 216 40 35 202 3 0 6 13 11 29 10 1 105 chain 14004 chr10 135534747 + 6798443 6798737 L1PB1 5432 - 5 273 144567 5 2 0 18 1 0 13 1 0 21 1 0 9 0 1 14 2 0 15 68 52 43 1 0 15 2 1 52 2 0 9 chain 13055 chr10 135534747 + 6814575 6814749 MER30 238 - 7 202 148014 100 4 24 43 0 1 27 chain 38795 chr10 135534747 + 6821381 6821921 MLT2A2 560 + 0 546 71023 55 7 9 87 0 7 11 12 0 139 10 7 84 2 14 133 chain 20433 chr10 135534747 + 6827259 6827479 L1PA3long 6157 - 8 228 125802 220 chain 40748 chr10 135534747 + 6839044 6839495 LTR7 482 - 0 482 68241 187 0 31 264 chain 293955 chr10 135534747 + 6840748 6844462 HERVH-int 3825 - 0 3825 13766 453 42 252 684 0 1 133 0 1 185 0 1 105 0 4 290 4 31 243 0 1 218 15 0 126 0 2 214 0 3 62 0 1 36 1 0 49 2 1 9 21 0 64 1 38 14 7 1 13 5 1 9 2 1 9 1 0 38 127 0 532 chain 6049 chr10 135534747 + 6843808 6843879 HERVH-int 3825 - 3293 3364 184819 71 chain 39582 chr10 135534747 + 6844464 6844915 LTR7 482 - 0 482 69916 203 1 32 247 chain 547723 chr10 135534747 + 6846121 6852261 L1PA3long 6157 - 10 6157 1737 143 1 2 690 1 5 422 0 4 1697 0 1 254 2 1 477 2 0 664 0 1 562 5 4 1220 chain 80540 chr10 135534747 + 6866140 6867108 LTR5_Hs 974 - 0 974 43373 72 2 1 30 2 0 40 0 7 538 0 1 150 0 1 134 chain 536208 chr10 135534747 + 6867900 6874635 HERVK-int 6823 - 248 6823 3420 4 1 0 8 1 0 17 35 26 12 1 0 4 1 0 25 2 1 5 1 0 8 1 0 7 11 5 10 10 6 10 20 13 29 2 0 5 9 8 12 3 2 12 2 0 9 191 117 20 1 0 11 17 11 24 1 0 7 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 124 1 0 36 1 0 100 1 0 23 1 0 197 1 0 12 2 1 2001 0 2 55 0 5 231 0 1 317 1 0 1068 1 0 6 7 2 371 2 1 313 3 0 124 1 0 311 1 0 21 1 0 26 2 0 85 4 0 120 1 0 128 0 4 24 4 1 154 11 0 11 15 12 11 3 10 39 1 0 19 1 0 23 1 0 5 1 0 9 1 0 5 chain 79433 chr10 135534747 + 6874635 6875603 LTR5_Hs 974 - 0 974 43857 100 8 6 34 8 15 533 0 1 285 chain 10812 chr10 135534747 + 6888280 6888409 MER85 139 - 0 139 156933 35 0 10 94 chain 7175 chr10 135534747 + 6892711 6892817 Tigger3c 601 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42 8 9 61 10 47 22 22 0 10 1 7 160 0 6 29 0 1 58 1 0 450 0 6 6 6 0 23 0 1 27 1 4 119 3 0 80 1 0 89 0 1 4 1 7 186 1 3 16 0 2 80 73 18 24 8 6 10 9 5 9 2 0 42 2 11 10 13 12 38 1 0 12 26 15 18 12 9 11 2 0 24 1 0 22 1 0 12 1 0 14 1 0 8 chain 15182 chr10 135534747 + 7023984 7024206 MER75B 242 - 0 242 140821 16 1 0 7 1 0 154 15 37 28 chain 55709 chr10 135534747 + 7033880 7034504 SVA_D 2077 + 1433 2077 55302 5 0 1 192 3 1 4 0 1 286 0 20 134 chain 18973 chr10 135534747 + 7042365 7042595 L1PA5 6144 + 5904 6135 130177 67 1 2 162 chain 78304 chr10 135534747 + 7046443 7047525 L1PA8A 6298 + 4955 6291 44373 192 1 0 26 10 0 316 7 13 78 1 0 33 0 1 183 6 273 33 0 18 47 78 52 71 chain 20592 chr10 135534747 + 7071622 7071934 THE1B 368 + 0 306 125327 120 1 0 50 3 0 30 35 33 73 chain 21538 chr10 135534747 + 7072473 7072851 THE1D 372 - 0 372 122012 32 1 0 115 1 0 4 62 68 111 16 4 21 0 2 15 chain 47015 chr10 135534747 + 7079391 7079917 L1PA5 6144 + 5616 6143 61191 373 0 1 153 chain 5537 chr10 135534747 + 7091552 7091709 Tigger3c 601 - 369 545 189701 6 7 0 31 69 95 44 chain 17695 chr10 135534747 + 7092012 7092345 THE1B 368 + 0 341 133718 44 0 15 43 73 71 27 16 12 82 1 0 47 chain 505091 chr10 135534747 + 7100012 7105498 L1PA2 6032 - 18 6032 6532 36 0 4 624 1 0 4437 0 1 290 0 524 98 chain 7449 chr10 135534747 + 7107516 7107623 MER1A 529 - 10 119 174447 54 9 11 44 chain 4013 chr10 135534747 + 7107968 7108015 MER1A 529 + 355 402 207188 47 chain 17626 chr10 135534747 + 7108417 7108626 AluYc 301 + 100 301 133915 14 8 0 187 chain 5280 chr10 135534747 + 7121142 7121237 L1MB2 1706 - 235 328 192202 46 4 5 17 7 4 21 chain 56202 chr10 135534747 + 7121267 7122062 L1PB 1623 + 554 1357 55017 143 9 0 78 0 4 122 0 1 61 47 66 269 7 0 59 chain 173814 chr10 135534747 + 7170028 7172481 L1PBa 3878 - 1426 3829 21610 188 33 37 14 0 3 177 2 0 94 1 3 73 9 10 239 1 0 162 3 4 57 1 0 100 10 13 206 0 3 85 2 0 33 1 0 244 0 4 179 1 0 55 1 0 230 1 0 26 1 0 45 70 22 45 30 22 15 1 0 4 3 0 11 chain 504638 chr10 135534747 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38 chain 21794 chr10 135534747 + 7353938 7354200 L1PA5 6144 + 5883 6143 121038 249 3 1 10 chain 32308 chr10 135534747 + 7438650 7439027 L1PA5 6144 + 5775 6144 80356 214 8 0 155 chain 36104 chr10 135534747 + 7462480 7462934 Charlie3 2679 + 2217 2679 74763 219 0 9 158 2 0 13 0 1 62 chain 4548 chr10 135534747 + 7502248 7502296 L1PA5 6144 - 250 298 200236 48 chain 19567 chr10 135534747 + 7502304 7502525 L1PA5 6144 + 5918 6139 128468 221 chain 28547 chr10 135534747 + 7541841 7542145 AluYa5 310 - 6 310 90981 304 chain 18248 chr10 135534747 + 7552105 7552441 L1MC1 2226 - 179 500 132208 52 2 0 9 30 27 45 1 0 27 7 0 24 29 26 25 0 1 85 chain 25402 chr10 135534747 + 7554119 7554495 MER1A 529 - 0 375 102673 58 11 13 58 3 0 6 0 3 7 2 0 178 1 0 7 0 2 5 8 6 32 chain 11472 chr10 135534747 + 7591321 7591476 L1PA8 5853 + 5693 5847 154414 65 6 5 84 chain 21464 chr10 135534747 + 7609334 7609585 L1PA5 6144 - 31 282 122275 251 chain 12657 chr10 135534747 + 7669100 7669265 L1PA8 5853 + 5689 5853 149613 38 0 1 12 2 1 19 1 0 93 chain 6841 chr10 135534747 + 7689203 7689286 MER58A 224 + 51 134 178650 83 chain 23796 chr10 135534747 + 7721658 7721992 MSTA 426 - 0 406 111495 85 6 8 39 5 6 4 1 0 67 1 71 126 chain 25292 chr10 135534747 + 7729903 7730247 L1PA11 4918 + 4169 4509 103264 162 0 1 63 2 1 11 2 1 64 2 0 17 1 0 20 chain 23009 chr10 135534747 + 7733262 7733623 THE1B 368 - 0 368 115583 75 18 17 26 4 3 4 0 1 43 4 2 6 2 0 19 1 0 108 5 20 31 2 0 13 chain 24383 chr10 135534747 + 7746749 7747044 L1PA7 6471 + 6175 6470 108180 295 chain 25876 chr10 135534747 + 7752898 7753263 L1PA8 5853 - 0 358 100543 93 1 0 19 2 1 49 1 0 11 1 0 71 3 1 36 12 11 66 chain 6211 chr10 135534747 + 7761777 7761855 L1PB4 2604 + 2474 2552 183486 78 chain 17779 chr10 135534747 + 7793830 7794034 AluYk4 311 + 114 311 133485 133 7 0 64 chain 19509 chr10 135534747 + 7796326 7796549 AluSc 308 + 11 234 128629 223 chain 11799 chr10 135534747 + 7803493 7803682 Tigger4b 360 + 13 228 153052 14 1 8 80 15 36 5 2 0 72 chain 4707 chr10 135534747 + 7816102 7816157 MER58A 224 + 169 224 198419 55 chain 8017 chr10 135534747 + 7816502 7816639 FLAM_A 137 + 0 130 170953 36 9 3 12 12 11 68 chain 3161 chr10 135534747 + 7872975 7873040 L1MC5 759 - 292 357 221722 6 1 0 11 13 14 34 chain 3160 chr10 135534747 + 7876297 7876337 L1M3 994 - 245 285 221738 40 chain 15293 chr10 135534747 + 7877080 7877302 MER30 238 - 4 238 140506 43 3 0 63 16 30 88 0 1 9 chain 19703 chr10 135534747 + 7898165 7898420 AluSz 310 + 0 260 128084 23 0 9 107 21 17 104 chain 23638 chr10 135534747 + 7900953 7901225 AluY 311 + 10 284 112368 122 0 1 13 0 1 137 chain 22548 chr10 135534747 + 7944130 7944409 AluSp 311 + 26 301 117812 265 4 0 10 chain 19936 chr10 135534747 + 8005530 8005779 L1PA6 6164 + 5915 6162 127342 58 2 0 189 chain 3277 chr10 135534747 + 8045684 8045726 Charlie1b 519 + 232 274 219416 42 chain 23362 chr10 135534747 + 8066284 8066555 AluY 311 + 29 300 113856 271 chain 7768 chr10 135534747 + 8141864 8141954 L1PA5 6144 + 6050 6140 172491 90 chain 28528 chr10 135534747 + 8259882 8260266 L1PA8 5853 - 0 390 91057 92 2 1 19 2 1 51 1 0 12 1 0 57 0 10 46 1 0 48 5 6 47 chain 5100 chr10 135534747 + 8321760 8321837 MER3 215 + 130 207 194080 44 2 3 26 1 0 4 chain 56506 chr10 135534747 + 8327850 8328482 L1PA4 6152 + 5514 6152 54849 494 0 1 29 0 1 103 0 4 6 chain 39701 chr10 135534747 + 8360250 8360685 L1PA3long 6157 - 2 437 69753 435 chain 49473 chr10 135534747 + 8389422 8390001 L1PA5 6144 - 0 577 59408 11 3 1 565 chain 23425 chr10 135534747 + 8429445 8429729 AluSp 311 - 11 299 113498 11 2 0 7 0 6 264 chain 2683 chr10 135534747 + 8432775 8432858 L1MA10 1535 - 50 118 230419 14 42 27 27 chain 21593 chr10 135534747 + 8461884 8462144 L1PA7 6471 + 6207 6468 121796 95 0 1 165 chain 9095 chr10 135534747 + 8464364 8464471 L1PA7 6471 - 16 123 165094 107 chain 23342 chr10 135534747 + 8490857 8491143 AluY 311 + 11 299 113967 121 0 1 10 1 4 5 3 0 122 0 1 24 chain 31100 chr10 135534747 + 8491915 8492313 MER57B1 401 - 0 401 82343 94 0 1 215 6 8 83 chain 18621 chr10 135534747 + 8505233 8505452 L1PA3long 6157 + 5936 6157 131159 7 0 1 205 0 1 7 chain 12612 chr10 135534747 + 8509933 8510091 L1PA4 6152 + 5981 6140 149797 27 0 1 131 chain 11144 chr10 135534747 + 8535763 8535921 L1PA8 5853 - 0 162 155654 47 0 6 40 1 0 17 7 6 46 chain 12643 chr10 135534747 + 8535932 8536101 L1PA8 5853 + 5509 5675 149665 45 9 8 47 2 0 66 chain 27308 chr10 135534747 + 8564204 8564580 THE1C 375 - 0 375 95251 26 1 0 151 22 19 91 0 1 17 0 2 68 chain 47225 chr10 135534747 + 8651389 8651948 L1PA7 6471 + 5908 6465 61025 413 0 1 137 3 0 6 chain 29010 chr10 135534747 + 8653693 8654062 THE1B 368 - 0 366 88939 176 2 0 10 11 10 170 chain 5723 chr10 135534747 + 8671243 8671415 MER33 330 + 38 225 187898 29 86 101 57 chain 31217 chr10 135534747 + 8671455 8671929 L1PA8 5853 - 0 474 82127 29 11 15 23 0 3 22 2 1 16 1 0 32 24 23 10 2 1 70 2 0 48 1 0 181 chain 28082 chr10 135534747 + 8684286 8684635 THE1B 368 - 20 368 92701 62 0 2 92 2 0 23 1 0 169 chain 4748 chr10 135534747 + 8709957 8710173 MLT1F 544 - 149 392 197938 29 2 0 21 0 1 9 135 163 20 chain 12510 chr10 135534747 + 8726746 8726891 L1PA7 6471 - 594 739 150207 145 chain 41275 chr10 135534747 + 8726891 8727399 L1PA7 6471 + 5944 6453 67567 262 0 2 6 1 0 239 chain 24529 chr10 135534747 + 8731925 8732213 L1PA4 6152 - 0 292 107380 6 0 5 249 1 0 32 chain 30427 chr10 135534747 + 8781989 8782307 AluYb8 318 - 0 318 83635 318 chain 66741 chr10 135534747 + 8782776 8783539 L1PA6 6164 - 996 1759 49429 763 chain 80213 chr10 135534747 + 8783539 8784531 L1PA6 6164 + 5160 6149 43501 5 2 0 72 4 6 19 8 5 51 0 4 186 12 8 633 chain 11569 chr10 135534747 + 8791788 8792076 L1PB1 5432 - 2 262 154027 8 1 0 4 1 0 7 8 7 12 3 2 20 1 0 5 1 0 19 69 50 16 1 0 43 1 0 16 2 1 50 chain 10396 chr10 135534747 + 8823270 8823397 L1PA7 6471 - 17 144 158713 127 chain 15855 chr10 135534747 + 8835191 8835409 MER30 238 + 0 237 138787 109 3 22 22 0 3 36 3 0 45 chain 24775 chr10 135534747 + 8838533 8838798 L1PA2 6032 - 0 265 106027 265 chain 43826 chr10 135534747 + 8847831 8848370 MER41A 554 + 13 554 64415 49 0 1 260 1 0 175 1 3 53 chain 49369 chr10 135534747 + 8880332 8880974 L1PA8 5853 + 5222 5853 59470 342 1 0 44 5 3 67 2 1 14 2 0 12 4 3 31 1 0 20 2 1 32 2 0 61 chain 7842 chr10 135534747 + 8881865 8882055 L1MA3 4352 - 0 228 172062 21 3 0 3 1 0 10 2 1 29 1 0 6 1 0 9 10 16 22 4 0 23 14 57 31 chain 125441 chr10 135534747 + 8905499 8906896 L1PA4 6152 - 13 1410 29267 135 0 1 662 2 0 46 0 1 552 chain 132864 chr10 135534747 + 8910332 8911874 SVA_D 2077 + 0 2077 27450 31 0 24 522 40 0 184 0 40 117 0 490 47 2 1 242 0 2 223 0 20 134 chain 23580 chr10 135534747 + 8912811 8913082 L1PA5 6144 - 15 286 112687 271 chain 33711 chr10 135534747 + 8947740 8948147 L1PA7 6471 + 6054 6461 78074 230 6 5 32 0 1 139 chain 23372 chr10 135534747 + 8956991 8957259 L1PA4 6152 - 0 273 113800 6 0 4 103 0 1 159 chain 14091 chr10 135534747 + 8959691 8960027 THE1B 368 + 0 368 144255 47 41 48 12 3 6 10 2 0 24 79 103 118 chain 13144 chr10 135534747 + 8968132 8968350 L1MA2 4263 - 158 367 147668 47 15 8 85 16 14 55 chain 54484 chr10 135534747 + 9025594 9026192 L1PA3long 6157 - 1052 1650 55869 598 chain 93069 chr10 135534747 + 9026192 9027205 L1PA3long 6157 + 5136 6149 38638 1013 chain 4404 chr10 135534747 + 9097919 9098014 L1MA9 1812 - 153 245 201885 43 20 18 18 1 0 13 chain 13691 chr10 135534747 + 9098873 9099446 LTR12D 1347 + 587 1120 145629 23 0 12 27 0 2 42 180 13 44 185 299 33 1 0 38 chain 4720 chr10 135534747 + 9099496 9099545 LTR12D 1347 + 951 1000 198281 49 chain 9393 chr10 135534747 + 9101534 9101643 L1PA6 6164 + 6053 6162 163594 109 chain 70742 chr10 135534747 + 9112088 9113047 L1PA8 5853 - 14 970 48045 9 0 9 61 1 0 18 3 2 47 7 5 9 2 1 64 6 4 46 1 0 167 13 9 155 0 1 145 0 1 76 2 0 127 chain 69627 chr10 135534747 + 9119161 9120052 L1PA7 6471 + 5541 6453 48558 80 0 3 681 33 51 97 chain 13926 chr10 135534747 + 9132216 9132374 L1PA4 6152 + 5994 6152 144833 158 chain 21731 chr10 135534747 + 9158181 9158419 L1PA3long 6157 + 5918 6156 121274 238 chain 17696 chr10 135534747 + 9176079 9176315 L1PA7 6471 - 10 255 133712 88 0 8 44 7 8 97 chain 75252 chr10 135534747 + 9180898 9181756 L1PA5 6144 + 5278 6138 45894 491 7 9 360 chain 118129 chr10 135534747 + 9225129 9226520 LTR12C 1709 + 0 1709 31762 460 4 1 6 0 4 100 1 0 223 0 318 112 0 4 391 10 6 84 chain 29322 chr10 135534747 + 9258940 9259251 AluYa5 310 + 0 310 87422 132 1 0 178 chain 113028 chr10 135534747 + 9314507 9315939 SVA_B 1603 - 9 1554 33369 601 7 17 14 8 4 38 5 1 33 0 40 49 117 0 276 0 37 146 0 144 45 0 7 93 chain 2080 chr10 135534747 + 9315284 9315379 SVA_B 1603 - 669 726 165849 19 34 0 37 4 0 1 chain 6660 chr10 135534747 + 9335605 9335710 L1MA8 2339 + 2166 2262 179996 33 6 0 38 2 0 19 1 0 6 chain 36575 chr10 135534747 + 9378217 9378699 MER1A 529 - 7 484 74131 53 17 12 412 chain 19925 chr10 135534747 + 9389666 9390030 THE1B 368 + 0 368 127380 105 29 30 42 32 24 9 0 4 13 8 16 59 11 10 56 chain 76922 chr10 135534747 + 9412881 9413722 L1PA3long 6157 - 0 841 44916 841 chain 108168 chr10 135534747 + 9413722 9414900 L1PA3long 6157 + 4129 5307 34663 1178 chain 14422 chr10 135534747 + 9426883 9427079 Tigger3a 397 - 65 259 143144 25 5 3 166 chain 11424 chr10 135534747 + 9430466 9430601 MER85 139 - 3 138 154588 135 chain 70727 chr10 135534747 + 9443918 9444850 LTR13 1007 + 0 947 48053 73 2 0 190 0 2 132 0 1 88 2 1 6 0 16 119 2 1 56 26 26 236 chain 123394 chr10 135534747 + 9451331 9452884 HERVL-int 5654 + 4127 5654 29917 381 2 1 713 32 6 200 2 3 223 chain 31176 chr10 135534747 + 9452884 9453270 MLT2A1 477 + 0 390 82209 133 8 9 27 0 4 151 1 0 66 chain 45092 chr10 135534747 + 9465020 9465533 MER9a2 513 - 0 513 62943 513 chain 77363 chr10 135534747 + 9495446 9496508 MER11A 1151 + 0 1151 44796 79 7 15 133 0 4 63 0 11 368 15 18 11 3 4 37 0 4 67 1 2 18 4 62 51 0 1 46 5 4 87 1 0 66 chain 28418 chr10 135534747 + 9519822 9520121 AluYa5 310 - 11 310 91507 299 chain 155411 chr10 135534747 + 9527184 9528965 L1PA4 6152 - 9 1803 23936 150 3 0 5 6 9 81 1 0 79 1 2 192 0 13 1263 chain 41582 chr10 135534747 + 9528965 9529429 L1PA4 6152 + 3882 4346 67182 464 chain 29241 chr10 135534747 + 9561393 9561699 AluYb8 318 - 12 318 87841 306 chain 556168 chr10 135534747 + 9561847 9567992 L1PA3long 6157 + 10 6157 705 463 2 1 2782 0 3 248 0 1 1159 1 0 1490 chain 56123 chr10 135534747 + 9582147 9582904 L1PA8 5853 - 0 750 55055 6 3 0 86 6 5 15 2 1 39 0 1 21 2 1 69 2 0 47 1 0 41 0 1 18 13 11 6 0 2 380 chain 52323 chr10 135534747 + 9582904 9583517 L1PA8 5853 + 4509 5124 57013 497 7 9 109 chain 153957 chr10 135534747 + 9624996 9626685 L1PA3long 6157 - 690 2376 24093 832 2 0 691 1 0 163 chain 63240 chr10 135534747 + 9626685 9627378 L1PA3long 6157 + 5463 6157 51344 321 0 1 372 chain 142958 chr10 135534747 + 9629848 9631533 L1PA7 6471 - 10 1696 25659 840 2 1 113 0 1 46 0 1 106 1 0 294 0 2 102 1 0 180 chain 28774 chr10 135534747 + 9660747 9661059 AluYb8 318 + 0 309 90004 132 3 0 177 chain 20912 chr10 135534747 + 9702318 9702565 AluSp 311 + 38 285 124238 247 chain 26992 chr10 135534747 + 9724371 9724742 THE1B 368 + 0 368 96308 172 23 20 176 chain 89457 chr10 135534747 + 9767425 9768445 L1P1 4361 - 511 1570 39820 519 6 44 288 0 1 207 chain 3707 chr10 135534747 + 9783120 9783165 MER41A 554 + 399 444 211848 45 chain 6199 chr10 135534747 + 9825547 9825669 L1PREC2 3366 - 3041 3157 183594 28 7 6 33 1 0 4 2 0 7 2 1 13 1 0 24 chain 100352 chr10 135534747 + 9873375 9874462 L1PA3long 6157 + 5070 6157 36673 1087 chain 48267 chr10 135534747 + 9880561 9881379 L1PB1 5432 + 4684 5423 60266 113 0 9 203 19 9 85 57 11 20 1 0 12 1 0 11 17 11 52 2 1 15 1 0 45 1 0 15 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 chain 82628 chr10 135534747 + 9881611 9882525 L1PA4 6152 - 179 1092 42494 679 1 0 234 chain 15041 chr10 135534747 + 9882525 9882693 L1PA4 6152 + 5980 6151 141198 23 0 3 145 chain 2858 chr10 135534747 + 9882751 9882808 L1PB1 5432 + 5106 5158 227688 8 3 0 24 1 0 4 3 2 14 chain 3875 chr10 135534747 + 9882813 9882869 L1PB1 5432 + 5159 5213 209229 9 2 0 45 chain 2986 chr10 135534747 + 9882878 9882938 L1PB1 5432 + 5221 5281 225325 16 1 0 16 6 7 21 chain 6966 chr10 135534747 + 9882978 9883100 L1PB1 5432 + 5308 5422 177703 18 3 1 5 1 0 14 2 0 24 1 0 22 2 1 11 1 0 18 chain 38503 chr10 135534747 + 9886096 9886653 LTR10A 586 + 0 559 71434 107 8 9 66 1 0 20 5 6 73 1 2 45 13 14 104 11 12 45 8 6 50 chain 64806 chr10 135534747 + 9896964 9897745 SVA_B 1603 - 0 744 50656 614 37 0 39 0 1 85 1 0 5 chain 1056 chr10 135534747 + 9897580 9897609 SVA_B 1603 - 539 568 223813 29 chain 12791 chr10 135534747 + 9928348 9928506 L1PA7 6471 - 4 161 149095 9 1 0 148 chain 43785 chr10 135534747 + 9952403 9952951 MLT2A2 560 - 0 560 64471 299 0 1 24 12 22 9 0 1 204 chain 29386 chr10 135534747 + 9998506 9998821 AluYb8 318 - 3 318 87138 315 chain 8039 chr10 135534747 + 9999910 10000000 L1HS 6032 + 392 482 170821 90 chain 509838 chr10 135534747 + 10000000 10005698 L1PA3long 6157 + 482 6157 6181 954 30 0 277 0 1 1456 2 1 1054 1 0 132 0 4 256 0 4 679 1 0 642 0 1 214 chain 27736 chr10 135534747 + 10007903 10008202 AluYg6 310 + 0 299 93918 299 chain 25086 chr10 135534747 + 10025949 10026307 THE1B 368 + 2 368 104374 11 2 0 27 0 5 29 3 1 97 3 2 132 5 13 49 chain 5437 chr10 135534747 + 10057470 10057541 MADE1 96 + 0 96 190640 17 0 25 54 chain 23330 chr10 135534747 + 10076763 10077047 AluSc5 308 + 18 302 114031 284 chain 9802 chr10 135534747 + 10082882 10083097 L1PB1 5432 - 13 205 161584 15 1 0 13 1 0 21 1 0 24 2 0 14 14 11 11 27 14 15 1 0 45 1 0 9 chain 26115 chr10 135534747 + 10083706 10084094 L1PA16 3655 + 3189 3578 99556 11 6 5 85 2 0 119 13 12 51 10 15 91 chain 537510 chr10 135534747 + 10111337 10117421 L1PA4 6152 - 1 6141 3234 167 2 1 5 0 1 683 1 0 1891 1 0 244 0 2 876 4 0 860 1 6 105 0 56 90 0 3 44 0 1 680 5 0 425 chain 26083 chr10 135534747 + 10118686 10119059 THE1C 375 + 0 375 99697 115 8 5 60 0 1 6 1 0 6 0 1 9 0 3 124 5 7 13 1 0 25 chain 32562 chr10 135534747 + 10127833 10128545 L1PB1 5432 - 22 575 79923 6 1 0 34 1 0 24 2 0 14 1 0 5 3 1 14 5 0 9 7 1 6 1 0 16 1 0 42 20 18 46 5 0 8 200 68 241 chain 5771 chr10 135534747 + 10147245 10147341 L1MC3 1789 + 60 158 187428 21 14 16 61 chain 35583 chr10 135534747 + 10149024 10149404 L1PA2 6032 - 0 380 75429 380 chain 94518 chr10 135534747 + 10149404 10150436 L1PA2 6032 + 4648 5681 38204 607 0 1 425 chain 21286 chr10 135534747 + 10163045 10163299 MER4E 760 - 28 286 122913 16 0 4 238 chain 35460 chr10 135534747 + 10202423 10204544 MER41A 554 - 20 554 75609 61 0 5 207 1645 53 208 chain 2608 chr10 135534747 + 10203640 10203692 LTR12C 1709 + 688 818 231590 25 11 89 16 chain 39496 chr10 135534747 + 10204863 10205374 LTR10G 522 - 10 522 70025 61 1 3 335 1 0 113 chain 45425 chr10 135534747 + 10205692 10206331 PRIMA4_LTR 623 + 0 623 62568 24 1 0 57 7 1 61 3 1 44 4 0 19 1 0 53 0 2 66 2 0 56 4 0 63 0 2 174 chain 3089 chr10 135534747 + 10206682 10206815 MER31B 477 - 132 268 223119 28 84 87 21 chain 58957 chr10 135534747 + 10222645 10223712 L1PB1 5432 + 4476 5423 53424 145 0 1 182 1 0 12 8 11 38 1 2 25 14 13 198 168 64 53 17 16 44 1 0 5 0 1 10 1 0 6 16 6 19 2 0 4 1 0 15 2 0 24 1 0 21 14 13 19 chain 169688 chr10 135534747 + 10223928 10225887 L1HS 6032 + 4092 6021 22093 972 0 1 113 0 1 85 2 1 420 34 3 333 chain 48195 chr10 135534747 + 10229273 10229901 L1PA8 5853 - 0 638 60322 92 2 1 19 6 5 40 8 9 67 0 10 45 2 1 177 0 2 170 chain 42139 chr10 135534747 + 10264784 10265320 MER41A 554 - 0 541 66461 46 1 2 31 1 6 445 1 0 11 chain 21050 chr10 135534747 + 10267919 10268152 L1PA4 6152 + 5918 6151 123728 233 chain 8574 chr10 135534747 + 10274574 10274672 HY3 101 + 1 99 167881 98 chain 13609 chr10 135534747 + 10278912 10279143 L1PA8 5853 + 5637 5853 145941 41 17 15 47 2 1 19 1 0 30 13 0 8 1 0 37 0 2 9 0 1 6 chain 22460 chr10 135534747 + 10326542 10326805 AluY 311 + 20 285 118199 104 2 4 157 chain 12810 chr10 135534747 + 10330169 10330856 L1PA7 6471 + 5530 6218 47597 93 3 0 576 0 4 15 chain 8364 chr10 135534747 + 10330883 10330982 LTR12_ 688 - 23 122 169056 99 chain 167581 chr10 135534747 + 10331034 10333119 HERV9-int 5642 - 3557 5638 22327 26 0 4 14 0 1 254 0 3 195 2 1 9 8 9 71 0 2 176 0 1 68 1 0 117 6 4 23 5 0 312 1 0 79 6 0 56 1 0 57 1 2 597 chain 42367 chr10 135534747 + 10333144 10333765 LTR12 884 - 0 883 66192 41 0 236 207 0 22 40 0 1 168 27 6 18 23 7 32 0 41 41 2 1 22 chain 4662 chr10 135534747 + 10333766 10334016 L1PA7 6471 + 6218 6467 47597 103 6 5 141 chain 3469 chr10 135534747 + 10365946 10365987 5S 121 - 79 120 215828 41 chain 35793 chr10 135534747 + 10366594 10367057 MER4A1 472 - 4 468 75143 125 2 0 317 1 2 8 0 2 10 chain 29987 chr10 135534747 + 10391725 10392100 THE1C 375 + 0 374 84845 350 1 0 24 chain 12181 chr10 135534747 + 10434768 10435118 THE1B 368 - 11 368 151489 45 11 10 52 0 1 4 163 170 75 chain 3053 chr10 135534747 + 10440802 10440839 MER63B 433 - 66 103 223950 37 chain 40667 chr10 135534747 + 10447884 10448344 L1PA4 6152 + 5679 6140 68341 138 0 1 322 chain 10789 chr10 135534747 + 10452319 10452447 L1PA2 6032 - 237 367 157037 24 0 1 75 1 2 28 chain 21379 chr10 135534747 + 10452448 10452682 L1PA2 6032 + 5797 6029 122589 222 2 0 10 chain 16301 chr10 135534747 + 10470494 10470830 L1PB1 5432 - 12 312 137478 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 7 2 0 13 33 16 16 1 0 40 26 24 49 2 0 8 5 1 12 1 0 12 1 0 14 chain 24701 chr10 135534747 + 10481620 10481905 L1PA5 6144 + 5858 6144 106431 136 0 1 149 chain 21474 chr10 135534747 + 10489035 10489284 L1PA4 6152 + 5895 6143 122236 236 1 0 12 chain 26889 chr10 135534747 + 10493415 10493732 AluYb8 318 - 0 318 96674 151 17 18 149 chain 11792 chr10 135534747 + 10511887 10512133 Tigger4a 237 + 0 236 153079 70 1 0 29 4 11 7 7 0 17 19 15 10 5 0 13 4 0 3 3 0 8 1 8 45 chain 11468 chr10 135534747 + 10534294 10534425 L1PA5 6144 + 6004 6135 154437 131 chain 3670 chr10 135534747 + 10595337 10595431 MLT1A 405 - 243 337 212390 20 40 40 34 chain 257166 chr10 135534747 + 10597998 10600824 L1PA2 6032 - 4 2830 15868 2749 1 0 29 0 1 47 chain 30592 chr10 135534747 + 10602507 10603088 L1PB1 5432 + 4841 5392 83213 138 11 8 92 0 4 11 0 1 8 1 2 9 3 0 24 1 0 9 16 11 11 2 0 51 2 1 16 1 0 44 1 0 10 61 45 10 2 0 16 15 14 16 chain 22593 chr10 135534747 + 10608382 10608627 L1PA2 6032 - 2 247 117613 245 chain 16953 chr10 135534747 + 10611128 10611500 THE1B 368 - 12 368 135722 44 7 6 68 30 32 13 35 26 41 52 44 82 chain 102624 chr10 135534747 + 10619358 10620503 L1PA4 6152 - 16 1179 36100 64 0 19 669 1 0 411 chain 3735 chr10 135534747 + 10635151 10635192 MLT1H2 457 - 15 56 211392 41 chain 25175 chr10 135534747 + 10662583 10662904 AluY 311 + 0 306 103875 129 3 0 30 4 0 3 8 0 144 chain 13954 chr10 135534747 + 10670544 10670704 L1PA6 6164 - 288 448 144737 160 chain 7628 chr10 135534747 + 10670710 10670792 L1PA5 6144 + 6050 6132 173362 82 chain 552392 chr10 135534747 + 10692820 10698847 L1PA2 6032 + 0 6032 1146 918 5 4 1107 0 6 2370 2 0 774 0 2 851 chain 3542 chr10 135534747 + 10699373 10699416 MADE1 96 - 50 93 214681 43 chain 7309 chr10 135534747 + 10712738 10712836 L1MC1 2226 - 184 281 175377 62 1 0 35 chain 539614 chr10 135534747 + 10732971 10738961 L1PA3long 6157 - 0 6148 2879 526 1 0 18 0 1 429 1 0 1494 1 0 1526 0 6 1136 0 4 113 0 128 543 0 21 58 0 1 144 chain 3016 chr10 135534747 + 10803938 10803971 MLT2B4 540 + 505 538 224717 33 chain 43381 chr10 135534747 + 10882650 10883207 L1PA8 5853 - 0 551 64954 92 7 6 14 2 1 52 2 1 5 1 0 74 2 0 44 1 0 67 0 1 194 chain 5521 chr10 135534747 + 10905539 10905620 MADE1 96 + 0 96 189826 31 7 22 43 chain 18318 chr10 135534747 + 10973779 10974063 THE1B 368 - 65 368 132029 60 13 11 18 0 1 4 1 0 4 0 7 29 1 0 101 9 24 44 chain 30463 chr10 135534747 + 11029695 11030190 L1PB2 3958 + 3337 3838 83508 26 1 0 14 2 0 62 2 0 9 6 3 4 1 0 89 2 1 45 1 2 21 9 8 16 0 2 43 1 0 14 1 19 27 15 13 20 1 0 63 chain 15416 chr10 135534747 + 11165854 11166190 THE1B 368 - 15 368 140150 41 1 2 7 2 0 8 0 4 38 15 14 7 1 0 14 0 4 13 1 4 16 13 12 53 6 9 12 41 48 47 chain 286793 chr10 135534747 + 11168866 11172221 L1PA6 6164 - 2 3387 14235 9 0 2 182 4 6 136 0 1 504 0 8 22 0 5 214 0 1 419 0 4 1142 0 1 236 0 4 74 0 2 413 chain 25160 chr10 135534747 + 11184373 11184666 AluY 311 + 8 302 103955 143 0 1 150 chain 23174 chr10 135534747 + 11236053 11236316 AluSc 308 - 35 298 114789 263 chain 20699 chr10 135534747 + 11273965 11274192 L1PA4 6152 - 9 236 124969 227 chain 26163 chr10 135534747 + 11276363 11276664 AluYf4 310 + 0 302 99356 206 0 1 95 chain 21695 chr10 135534747 + 11354629 11354899 AluSc 308 + 13 282 121407 242 1 0 27 chain 23997 chr10 135534747 + 11388363 11388652 AluSp 311 + 10 297 110344 192 0 1 80 3 0 14 chain 27886 chr10 135534747 + 11389580 11389920 THE1B 368 - 0 339 93411 200 1 0 139 chain 11058 chr10 135534747 + 11395359 11395531 MER66C 541 + 96 270 155976 14 0 1 7 1 2 93 17 17 40 chain 10723 chr10 135534747 + 11420676 11420804 MER85 139 + 1 139 157307 88 0 10 40 chain 55805 chr10 135534747 + 11435742 11436435 LTR30 714 + 13 704 55244 516 18 17 146 1 0 12 chain 6211 chr10 135534747 + 11444511 11444604 L1MA2 4263 + 4003 4089 183485 55 7 0 31 chain 101494 chr10 135534747 + 11445513 11446628 L1PA3long 6157 + 5042 6157 36400 1115 chain 6363 chr10 135534747 + 11459254 11459373 L1MCa 1829 + 1426 1544 182289 58 28 27 33 chain 62337 chr10 135534747 + 11513262 11513978 L1PA5 6144 + 5421 6144 51741 705 0 7 11 chain 86994 chr10 135534747 + 11536430 11537431 LTR13 1007 - 0 1007 40784 309 1 0 8 0 4 266 0 2 20 0 1 4 1 0 7 0 1 385 chain 17063 chr10 135534747 + 11627440 11627666 AluY 311 + 61 287 135417 71 0 1 104 5 4 46 chain 29447 chr10 135534747 + 11669068 11669378 AluYa5 310 - 0 310 86866 310 chain 6534 chr10 135534747 + 11713311 11713397 Tigger1 2417 - 1741 1826 180977 10 1 0 75 chain 20392 chr10 135534747 + 11745684 11745935 AluSg7 307 - 47 299 125920 128 0 1 123 chain 12244 chr10 135534747 + 11748818 11748973 THE1B 368 - 204 368 151238 22 0 4 98 0 5 35 chain 559523 chr10 135534747 + 11773435 11779464 L1PA2 6032 - 1 6029 388 5109 5 4 915 chain 6894 chr10 135534747 + 11779490 11779573 THE1B-int 1605 - 1214 1297 178232 83 chain 5568 chr10 135534747 + 11803513 11803716 MLT1G1 539 - 77 282 189401 34 1 0 15 116 119 37 chain 6186 chr10 135534747 + 11808656 11808732 L1MC 810 - 289 365 183686 76 chain 3917 chr10 135534747 + 11812902 11813062 L1MB8 1703 - 199 364 208585 27 99 104 34 chain 16761 chr10 135534747 + 11821118 11821418 THE1B 368 - 58 368 136226 4 1 0 66 1 0 10 7 6 6 0 4 13 0 3 14 1 0 5 0 1 9 1 0 50 2 0 5 0 3 25 33 39 47 chain 7903 chr10 135534747 + 11826759 11827096 MLT1B 390 - 25 381 171624 88 213 233 14 0 1 7 2 0 13 chain 91124 chr10 135534747 + 11834639 11835646 LTR13 1007 + 0 1007 39254 1007 chain 7293 chr10 135534747 + 11835736 11835839 MER4A 717 - 613 717 175488 34 1 0 44 4 6 20 chain 4198 chr10 135534747 + 11844196 11844264 MADE1 96 - 0 96 204577 24 7 35 37 chain 36858 chr10 135534747 + 11845345 11845856 MER1A 529 - 1 528 73721 55 13 16 162 1 2 252 12 24 16 chain 5374 chr10 135534747 + 11946425 11946605 L1MD2 1676 + 423 601 191255 32 98 96 50 chain 5861 chr10 135534747 + 11973223 11973299 Tigger3c 601 + 478 555 186582 31 1 2 44 chain 24767 chr10 135534747 + 11981516 11981804 AluSq10 312 - 16 301 106075 35 1 0 128 2 0 122 chain 209358 chr10 135534747 + 12014381 12016768 L1PA5 6144 - 2 2392 18538 7 4 0 358 1 0 1287 0 4 142 0 4 588 chain 25755 chr10 135534747 + 12036712 12037003 AluY 311 + 19 311 101059 113 0 1 178 chain 28803 chr10 135534747 + 12050694 12051108 L1PA8 5853 - 6 415 89883 77 15 14 12 1 0 49 19 17 70 2 0 12 1 3 29 1 0 126 chain 24407 chr10 135534747 + 12053666 12053947 AluSp 311 + 4 285 108042 281 chain 13317 chr10 135534747 + 12059741 12059905 L1PA7 6471 - 3 162 147019 7 4 0 143 1 0 9 chain 26022 chr10 135534747 + 12072900 12073194 AluYk4 311 + 9 303 99934 294 chain 7323 chr10 135534747 + 12104060 12104154 MER30 238 - 0 97 175280 39 0 3 55 chain 24775 chr10 135534747 + 12114738 12115025 AluSp 311 - 15 302 106026 287 chain 14360 chr10 135534747 + 12125181 12125426 MER30 238 - 0 238 143342 100 2 0 9 8 25 68 33 11 25 chain 5656 chr10 135534747 + 12158300 12158367 U6 107 - 29 96 188504 67 chain 2647 chr10 135534747 + 12167558 12167586 L1MA4 2864 + 2643 2671 231040 28 chain 22706 chr10 135534747 + 12174033 12174315 AluSg 306 + 14 296 117044 282 chain 25398 chr10 135534747 + 12190238 12190542 AluSp 311 - 6 310 102693 304 chain 23039 chr10 135534747 + 12217946 12218220 AluSp 311 + 0 306 115454 51 0 32 223 chain 3011 chr10 135534747 + 12254244 12254277 L1MC4 1079 + 30 63 224790 33 chain 8772 chr10 135534747 + 12263803 12263909 MER30 238 + 132 238 166805 106 chain 14943 chr10 135534747 + 12265884 12266191 L1PB1 5432 - 9 288 141492 19 1 0 12 6 5 17 1 0 24 2 0 14 1 0 5 3 1 18 26 16 4 1 0 7 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 chain 124336 chr10 135534747 + 12267759 12269265 SVA_B 1603 - 0 1603 29587 547 0 77 17 5 1 41 8 4 40 18 58 225 39 0 397 1 0 151 0 28 17 chain 41158 chr10 135534747 + 12307060 12307592 MER41A 554 - 0 554 67701 38 8 18 200 0 1 100 7 18 179 chain 15263 chr10 135534747 + 12324520 12325588 L1PB1 5432 - 2 725 57690 12 2 0 14 1 0 13 1 0 21 1 0 9 0 2 13 32 27 16 23 11 11 11 10 35 1 0 15 2 1 53 2 0 9 6 2 9 1 0 9 1 0 24 1 0 11 13 0 44 307 0 156 1 0 88 0 8 100 chain 182624 chr10 135534747 + 12325637 12327675 L1PA4 6152 - 14 2057 20724 129 0 1 700 0 4 1209 chain 1801 chr10 135534747 + 12328025 12328151 L1PB1 5432 - 743 871 57690 58 0 2 68 chain 12228 chr10 135534747 + 12336532 12336729 LOR1b 457 + 148 379 151303 21 31 65 145 chain 25040 chr10 135534747 + 12338638 12338949 L1PA7 6471 + 6159 6466 104597 299 4 0 8 chain 24275 chr10 135534747 + 12340301 12340587 AluSp 311 - 12 298 108808 286 chain 62336 chr10 135534747 + 12351393 12352195 LTR12 884 - 0 884 51743 107 2 35 342 0 22 34 24 8 199 0 2 29 0 41 65 chain 7614 chr10 135534747 + 12377236 12377392 L1PA15 4387 + 4205 4352 173452 11 2 1 37 21 19 41 3 1 11 4 0 26 chain 29416 chr10 135534747 + 12381368 12381683 AluYb8 318 + 0 313 87001 132 2 0 181 chain 10540 chr10 135534747 + 12389535 12389664 L1PB4 2604 - 74 203 158090 129 chain 7999 chr10 135534747 + 12405521 12405643 MER2 342 - 129 255 171070 83 11 15 28 chain 28540 chr10 135534747 + 12409909 12410223 AluYb8 318 + 0 314 91001 314 chain 17156 chr10 135534747 + 12470028 12470236 L1PA7 6471 - 10 214 135148 90 4 0 114 chain 44862 chr10 135534747 + 12485447 12486320 MER41A 554 - 0 554 63216 145 0 4 17 319 0 199 4 0 189 chain 43523 chr10 135534747 + 12488095 12488647 MER41A 554 - 0 554 64777 123 1 2 236 8 9 184 chain 4873 chr10 135534747 + 12495486 12495611 L1MB3 1562 - 286 415 196557 44 53 57 28 chain 20003 chr10 135534747 + 12508173 12508410 AluY 311 + 49 286 127133 237 chain 101496 chr10 135534747 + 12560486 12562038 SVA_E 1901 - 0 1232 36398 679 0 1 181 251 0 80 1 2 31 3 0 110 50 0 5 1 0 8 96 39 23 0 40 33 chain 3935 chr10 135534747 + 12561348 12561459 SVA_E 1901 - 880 948 142002 15 43 0 53 chain 2541 chr10 135534747 + 12561363 12561406 SVA_E 1901 - 944 1017 166309 26 16 46 1 chain 4812 chr10 135534747 + 12561459 12561597 SVA_E 1901 - 597 735 138659 138 chain 1453 chr10 135534747 + 12561822 12561846 SVA_E 1901 - 912 936 132126 24 chain 2283 chr10 135534747 + 12561846 12561871 SVA_E 1901 - 1059 1084 187623 25 chain 2300 chr10 135534747 + 12561943 12561981 SVA_E 1901 - 936 974 132126 38 chain 2022 chr10 135534747 + 12562038 12562083 SVA_E 1901 - 1027 1070 142706 38 2 0 5 chain 74681 chr10 135534747 + 12562083 12562924 SVA_D 2077 - 1179 2022 46171 235 0 3 15 4 3 587 chain 137430 chr10 135534747 + 12564197 12565789 SVA_D 2077 - 0 2071 26570 624 5 361 38 0 1 15 1 4 36 0 1 4 0 1 11 0 38 26 2 1 266 0 80 564 chain 28570 chr10 135534747 + 12574271 12574577 AluYa5 310 - 4 310 90868 306 chain 24435 chr10 135534747 + 12587519 12587816 AluSc5 308 + 1 297 107885 253 5 4 39 chain 37018 chr10 135534747 + 12588551 12588969 L1PA4 6152 + 5733 6152 73495 268 1 3 143 1 0 5 chain 5285 chr10 135534747 + 12593752 12593866 MER1A 529 + 410 525 192157 41 13 14 14 3 0 5 10 13 28 chain 3483 chr10 135534747 + 12610543 12610587 MER66C 541 - 127 171 215630 44 chain 24830 chr10 135534747 + 12611431 12611743 AluY 311 + 4 304 105722 122 8 0 125 9 5 48 chain 24087 chr10 135534747 + 12618421 12618721 MER1A 529 - 86 386 109814 300 chain 23789 chr10 135534747 + 12620273 12620584 AluSp 311 + 11 297 111534 36 27 2 248 chain 134622 chr10 135534747 + 12622901 12624753 L1PB1 5432 - 2 1839 27089 12 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 10 8 10 33 22 7 1 0 44 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 3 0 9 6 7 390 1 0 80 9 8 380 0 1 62 0 1 203 1 0 11 0 1 50 0 14 57 1 2 94 8 11 140 chain 22770 chr10 135534747 + 12635321 12635595 AluSq2 311 + 15 290 116727 118 0 1 156 chain 23171 chr10 135534747 + 12694309 12694597 AluY 311 + 11 293 114804 122 8 2 158 chain 11720 chr10 135534747 + 12740449 12740671 HSMAR2 1300 - 0 225 153381 38 4 10 11 6 0 31 29 31 89 1 2 13 chain 21970 chr10 135534747 + 12765757 12766008 L1PA5 6144 - 0 248 120354 5 3 0 243 chain 26233 chr10 135534747 + 12774402 12774764 THE1A 353 - 2 353 99084 240 2 1 21 19 9 80 chain 42166 chr10 135534747 + 12807612 12808696 LTR9 672 - 0 672 66440 47 2 3 94 2 0 21 5 6 16 1 0 98 397 46 61 67 11 9 1 0 16 0 1 142 17 12 59 1 2 28 chain 27880 chr10 135534747 + 12809475 12809863 MER4A1_ 611 - 24 417 93419 169 34 39 185 chain 11887 chr10 135534747 + 12831165 12831332 MER30 238 + 60 238 152665 47 5 19 73 3 0 39 chain 23670 chr10 135534747 + 12858895 12859223 THE1B 368 - 31 368 112203 43 1 0 92 2 0 21 14 13 22 2 0 91 0 15 40 chain 26736 chr10 135534747 + 12895717 12896015 L1PA5 6144 - 7 305 97197 298 chain 453105 chr10 135534747 + 12898454 12903750 L1PA6 6164 + 823 6162 8647 189 0 1 667 0 16 160 0 4 229 6 7 196 0 5 36 1 2 380 3 2 467 0 1 4 0 1 353 0 3 290 0 1 268 3 1 244 8 12 290 0 5 369 4 7 1129 chain 2756 chr10 135534747 + 12917693 12917722 MLT2B1 522 - 10 39 229386 29 chain 27182 chr10 135534747 + 12959183 12959495 AluYk4 311 - 0 311 95657 35 0 2 148 3 0 126 chain 24831 chr10 135534747 + 12995029 12995381 THE1B 368 - 1 368 105720 55 15 12 100 0 4 28 1 0 104 5 20 44 chain 4681 chr10 135534747 + 12998648 12998702 MER31B 477 + 2 56 198750 54 chain 13369 chr10 135534747 + 13034445 13034788 L1PB1 5432 + 5107 5417 146818 7 3 0 24 1 0 6 1 0 13 19 13 49 1 0 18 2 1 35 6 7 16 4 1 14 8 0 4 2 0 11 28 23 21 1 0 17 11 10 7 1 0 13 chain 13057 chr10 135534747 + 13039828 13040019 MER30 238 - 0 238 148006 21 0 9 69 0 30 4 11 0 56 0 1 15 0 18 15 chain 6432 chr10 135534747 + 13064508 13064624 MADE1 96 + 0 96 181761 51 27 7 38 chain 456998 chr10 135534747 + 13071256 13076490 L1PA5 6144 + 903 6132 8512 267 9 0 1136 3 0 945 0 5 566 2 1 60 0 2 777 1 2 1468 chain 18801 chr10 135534747 + 13095885 13096173 AluSz6 309 + 23 301 130677 102 1 0 13 16 17 109 10 0 37 chain 59383 chr10 135534747 + 13103434 13104222 MER4E1 777 - 0 777 53187 225 12 10 294 2 1 7 7 0 32 1 2 182 2 0 24 chain 14863 chr10 135534747 + 13106587 13106786 AluY 311 + 85 281 141740 38 5 4 110 2 0 44 chain 13050 chr10 135534747 + 13118283 13118446 MER41C 542 + 0 163 148031 163 chain 7475 chr10 135534747 + 13118460 13118914 LTR10E 629 + 0 452 62897 18 6 5 11 0 3 115 25 22 125 1 0 153 chain 53725 chr10 135534747 + 13118938 13119539 L1PA5 6144 + 4060 4662 56520 242 0 1 359 chain 130617 chr10 135534747 + 13119540 13121012 L1PA5 6144 + 4664 6135 27941 1334 1 0 137 chain 2964 chr10 135534747 + 13121021 13121201 LTR10E 629 + 452 629 62897 116 2 0 54 1 0 7 chain 18259 chr10 135534747 + 13122326 13122564 HERVIP10FH-int 2884 + 161 399 132180 27 0 1 14 6 5 191 chain 48088 chr10 135534747 + 13125381 13126016 LTR10E 629 + 1 626 60411 17 1 0 140 19 16 122 2 1 271 2 0 5 17 13 35 0 1 4 chain 25925 chr10 135534747 + 13126021 13126708 MER41C 542 + 172 542 100321 142 28 32 66 0 1 7 322 0 122 chain 18913 chr10 135534747 + 13131705 13132463 L1PB1 5432 - 12 404 130331 16 1 0 10 2 1 23 1 0 24 2 0 14 1 0 5 2 0 17 31 18 12 1 0 28 6 17 14 2 1 51 2 0 10 11 7 5 1 0 13 1 0 18 364 18 70 chain 21642 chr10 135534747 + 13135107 13135471 THE1B 368 - 0 368 121607 39 24 23 64 6 14 14 0 4 10 1 0 7 23 16 59 9 10 108 chain 7083 chr10 135534747 + 13173130 13173249 MLT1F 544 - 251 370 176867 37 0 3 5 21 18 56 chain 4659 chr10 135534747 + 13190489 13190587 L1MC2 1988 + 81 183 198963 19 30 34 49 chain 203478 chr10 135534747 + 13196106 13198387 L1PA4 6152 + 3873 6151 18962 127 5 7 233 0 1 1738 14 7 4 0 1 160 chain 3095 chr10 135534747 + 13219335 13219370 Tigger4a 237 - 11 46 223024 35 chain 4866 chr10 135534747 + 13221232 13221432 LTR57 402 - 206 402 196625 30 99 100 41 9 5 9 1 0 11 chain 3049 chr10 135534747 + 13229310 13229433 L1MB7 1623 - 130 231 224006 12 7 6 23 59 38 22 chain 11361 chr10 135534747 + 13231876 13232071 MER30 238 - 0 214 154854 33 6 9 30 23 44 7 5 0 91 chain 28627 chr10 135534747 + 13258017 13258318 AluYb8 318 - 17 318 90626 301 chain 10178 chr10 135534747 + 13259268 13259375 U6 107 + 0 107 159723 107 chain 123466 chr10 135534747 + 13259375 13260689 L1HS 6032 + 4707 6021 29893 1314 chain 23939 chr10 135534747 + 13287437 13287742 AluY 311 + 0 299 110694 26 4 0 97 6 4 172 chain 118873 chr10 135534747 + 13301418 13302838 LTR12C 1709 + 0 1709 31466 104 8 4 201 0 1 4 1 0 423 0 160 214 1 0 5 3 1 107 0 4 248 0 131 62 0 1 39 chain 36723 chr10 135534747 + 13310742 13311215 LTR15 485 - 7 485 73923 21 0 1 14 2 0 5 1 0 91 1 0 65 0 4 35 0 3 134 1 2 103 chain 24156 chr10 135534747 + 13350655 13350948 AluY 311 + 10 303 109446 54 2 0 68 0 1 119 8 9 42 chain 24186 chr10 135534747 + 13355649 13355930 AluYc3 301 - 18 301 109294 168 1 2 57 0 1 55 chain 8323 chr10 135534747 + 13358596 13358684 L1PA4 6152 - 11 99 169262 88 chain 46785 chr10 135534747 + 13372839 13373393 L1PA6 6164 - 4 556 61384 6 3 0 145 0 1 400 chain 4112 chr10 135534747 + 13373747 13373797 L1MB7 1623 + 1081 1131 205745 50 chain 38547 chr10 135534747 + 13396218 13396673 MER41A 554 - 97 554 71371 166 0 1 152 0 1 137 chain 46150 chr10 135534747 + 13421060 13421590 L1PA5 6144 + 5597 6132 61895 390 1 0 2 0 7 35 1 0 101 chain 18471 chr10 135534747 + 13449884 13450159 AluSp 311 + 23 297 131579 85 1 3 21 35 32 133 chain 34202 chr10 135534747 + 13450771 13451178 MER41A 554 + 34 441 77345 363 1 0 32 1 2 10 chain 3895 chr10 135534747 + 13460721 13460767 MER1A 529 + 363 409 208928 46 chain 6858 chr10 135534747 + 13470062 13470148 LTR12F 595 + 47 252 178523 53 0 119 33 chain 23555 chr10 135534747 + 13474346 13474629 AluSc 308 - 14 297 112820 283 chain 35055 chr10 135534747 + 13475339 13475918 MLT2A1 477 + 0 477 76110 168 10 7 210 4 0 14 103 13 13 9 0 42 0 4 6 chain 25011 chr10 135534747 + 13478343 13478697 THE1D 372 + 0 364 104733 100 13 15 46 1 5 20 10 14 164 chain 22728 chr10 135534747 + 13490730 13490991 AluY 311 + 37 301 116934 95 0 1 89 0 2 77 chain 21396 chr10 135534747 + 13493626 13493863 L1PA4 6152 - 15 253 122523 133 0 1 104 chain 7017 chr10 135534747 + 13505151 13505241 MER85 139 - 43 132 177340 43 1 0 46 chain 3283 chr10 135534747 + 13574399 13574438 U6 107 - 68 107 219297 39 chain 23278 chr10 135534747 + 13580054 13580351 MER41A 554 + 13 329 114309 175 0 15 45 3 7 74 chain 37094 chr10 135534747 + 13609645 13610087 L1PA7 6471 + 6027 6467 73390 432 2 0 8 chain 55875 chr10 135534747 + 13611485 13612286 L1PB3 3668 + 2380 3191 55195 280 10 9 45 0 5 103 48 56 110 13 10 161 7 8 24 chain 50044 chr10 135534747 + 13619245 13619843 L1PA7 6471 - 1 611 58988 4 1 0 126 0 12 21 0 1 446 chain 27533 chr10 135534747 + 13629366 13629879 MER51C 639 + 82 602 94567 57 0 1 21 134 132 64 0 4 88 2 1 5 0 1 88 0 8 7 4 0 43 chain 4572 chr10 135534747 + 13630828 13630944 Charlie1a 1436 - 0 118 199978 36 48 50 32 chain 8670 chr10 135534747 + 13632323 13632448 AluY 311 + 0 133 167356 45 19 27 61 chain 12125 chr10 135534747 + 13677548 13677747 L1PA11 4918 - 401 590 151712 9 4 0 20 1 0 16 3 1 61 7 5 11 2 1 65 chain 38252 chr10 135534747 + 13730120 13730554 L1PA4 6152 + 5717 6151 71774 434 chain 4869 chr10 135534747 + 13802041 13802128 MER58B 340 + 109 195 196604 20 15 14 52 chain 8590 chr10 135534747 + 13820864 13820960 L1PA7 6471 + 6365 6461 167785 96 chain 3449 chr10 135534747 + 13823329 13823368 L1MB3 1562 + 1263 1302 216218 39 chain 5320 chr10 135534747 + 13823997 13824082 L1PB1 5432 + 5347 5427 191821 23 1 0 21 1 0 13 1 0 18 2 0 5 chain 58701 chr10 135534747 + 13827639 13828306 L1PA5 6144 - 16 683 53581 667 chain 22756 chr10 135534747 + 13840426 13840717 AluY 311 + 0 283 116797 22 8 0 261 chain 3900 chr10 135534747 + 13858447 13858492 MLT1I 406 + 360 405 208847 45 chain 18450 chr10 135534747 + 13859471 13859816 THE1B 368 + 0 368 131643 47 81 91 31 1 0 29 0 3 13 0 4 12 1 0 10 1 0 26 0 9 93 chain 4594 chr10 135534747 + 13866917 13866974 MER2 342 + 188 245 199702 57 chain 13739 chr10 135534747 + 13875200 13875485 THE1B 368 - 62 368 145473 62 1 0 5 5 15 6 0 4 12 0 1 32 1 0 23 76 78 15 0 6 47 chain 25452 chr10 135534747 + 13901095 13901397 AluSp 311 + 0 295 102445 86 7 0 209 chain 86248 chr10 135534747 + 13937625 13938684 L1PA8 5853 + 4795 5853 41057 33 0 7 175 2 0 554 1 0 44 2 0 71 1 0 9 9 8 44 2 1 19 1 0 33 0 1 59 chain 18051 chr10 135534747 + 14008738 14009048 L1PB1 5432 + 4979 5277 132732 117 20 18 20 1 0 13 1 0 10 8 4 6 2 0 52 7 6 10 2 1 41 chain 21740 chr10 135534747 + 14024514 14024874 MER39B 650 + 264 626 121242 82 0 1 67 5 16 17 1 0 48 5 6 33 22 14 22 17 15 41 chain 41980 chr10 135534747 + 14028197 14028660 L1PA3long 6157 + 5697 6157 66649 449 3 0 11 chain 7191 chr10 135534747 + 14031779 14031929 MER53 195 - 1 192 176137 54 33 72 9 0 1 7 5 6 42 chain 3890 chr10 135534747 + 14067365 14067416 L1MB2 1706 - 12 63 209017 51 chain 24782 chr10 135534747 + 14081521 14081925 MER4A1 472 + 16 469 105983 196 43 63 33 18 43 76 0 1 4 1 0 5 0 4 28 chain 50078 chr10 135534747 + 14084000 14084591 LTR10C 591 + 0 591 58961 591 chain 7004 chr10 135534747 + 14086393 14086762 MLT1C 463 + 63 442 177439 32 6 9 20 6 0 16 1 0 12 231 245 45 chain 20196 chr10 135534747 + 14096681 14096967 THE1B 368 + 0 304 126539 138 0 4 27 1 0 12 5 18 10 1 5 18 1 0 10 1 0 62 chain 28708 chr10 135534747 + 14148789 14149254 L1PA16 3655 + 3174 3619 90304 30 15 14 35 0 9 21 20 18 277 3 0 14 18 0 11 5 0 16 chain 13732 chr10 135534747 + 14160580 14160874 THE1B 368 - 62 368 145500 62 41 46 29 1 0 46 16 17 21 31 38 47 chain 27539 chr10 135534747 + 14177160 14177585 MER57A1 433 + 0 426 94542 32 1 0 215 74 76 103 chain 13299 chr10 135534747 + 14207026 14207263 L1PA17 2846 + 2377 2600 147086 129 42 27 38 6 9 12 2 0 8 chain 14674 chr10 135534747 + 14249237 14249431 MER1A 529 - 0 196 142345 62 1 3 131 chain 22099 chr10 135534747 + 14251472 14251736 AluY 311 + 10 301 119787 31 0 24 67 0 1 142 0 2 24 chain 12693 chr10 135534747 + 14255958 14256149 THE1B 368 + 118 311 149475 50 2 1 29 0 3 9 0 4 14 3 2 12 1 0 64 2 0 5 chain 24760 chr10 135534747 + 14272923 14273345 L1PA15 4387 - 21 435 106110 10 1 0 18 16 11 12 3 1 26 2 3 13 10 17 37 2 1 10 4 0 22 1 0 55 1 0 26 1 0 152 chain 32970 chr10 135534747 + 14280528 14280977 L1PA8 5853 - 0 442 79263 92 5 4 19 1 0 37 9 8 11 1 0 65 9 7 46 1 0 153 chain 4813 chr10 135534747 + 14314600 14314658 MSTB 430 - 49 108 197194 7 0 1 51 chain 7316 chr10 135534747 + 14340014 14340190 MER58A 224 + 26 209 175328 58 74 81 44 chain 38070 chr10 135534747 + 14352324 14352927 LTR9 672 + 0 603 72029 196 1 0 90 4 7 50 56 14 22 1 43 79 8 9 18 2 0 28 1 0 5 4 5 8 1 0 29 chain 19850 chr10 135534747 + 14363766 14364153 MSTA 426 + 0 426 127651 40 1 0 60 28 52 47 1 48 11 51 0 30 12 32 106 chain 22460 chr10 135534747 + 14389020 14389364 THE1B 368 - 0 368 118201 115 45 55 29 1 0 104 6 21 44 chain 22916 chr10 135534747 + 14393913 14394196 AluY 311 + 0 285 116027 60 0 8 50 6 0 167 chain 6907 chr10 135534747 + 14402980 14403108 Charlie1b 519 - 249 374 178141 26 24 22 13 1 0 64 chain 24685 chr10 135534747 + 14418406 14418693 AluSp 311 + 10 297 106518 287 chain 40952 chr10 135534747 + 14418726 14419271 MLT2A2 560 + 0 560 67975 13 0 1 155 40 39 194 0 11 135 0 4 8 chain 45005 chr10 135534747 + 14429836 14430403 LTR66 600 + 0 575 63054 400 4 10 47 1 2 62 0 1 53 chain 4337 chr10 135534747 + 14438039 14438089 MADE1 96 + 46 96 202742 50 chain 30050 chr10 135534747 + 14443934 14444347 L1PA8 5853 - 1 429 84644 5 0 1 86 2 20 47 1 0 14 2 1 70 2 0 46 1 0 36 5 6 96 chain 40666 chr10 135534747 + 14449688 14450236 MER41A 554 + 0 554 68343 293 0 1 130 12 13 31 0 5 10 9 8 63 chain 41731 chr10 135534747 + 14457829 14458376 MER41A 554 + 1 554 66987 306 8 7 42 4 7 42 0 4 145 chain 51034 chr10 135534747 + 14459131 14459884 MER4E1 777 - 5 777 58287 165 19 23 15 23 31 113 0 6 67 0 1 4 1 0 181 0 1 4 1 0 38 7 8 5 2 0 68 0 4 14 2 0 24 chain 23608 chr10 135534747 + 14460454 14460789 MER41A 554 + 13 332 112536 126 18 5 41 0 6 6 6 0 64 3 0 71 chain 17597 chr10 135534747 + 14460789 14460995 MER41A 554 + 348 554 134006 206 chain 26307 chr10 135534747 + 14461661 14461958 L1PA3long 6157 + 5858 6157 98805 5 0 2 292 chain 12265 chr10 135534747 + 14464504 14464802 MLT1B 390 - 36 326 151134 75 126 118 97 chain 24452 chr10 135534747 + 14466066 14466349 AluSp 311 + 11 294 107791 283 chain 40321 chr10 135534747 + 14469217 14469759 MER41A 554 + 0 548 68852 179 7 11 164 4 5 35 6 7 147 chain 10659 chr10 135534747 + 14482946 14483074 L1PA5 6144 + 6008 6140 157565 29 0 4 99 chain 24468 chr10 135534747 + 14493474 14493834 THE1A 353 + 0 353 107714 31 1 0 4 0 1 47 1 0 28 2 1 76 31 26 139 chain 31504 chr10 135534747 + 14494730 14495134 L1PA8 5853 + 5444 5853 81637 118 1 0 48 2 0 71 4 14 45 2 1 19 2 1 92 chain 3422 chr10 135534747 + 14499335 14499374 MADE1 96 - 57 96 216728 39 chain 14375 chr10 135534747 + 14521306 14521532 THE1D 372 - 0 226 143284 32 1 0 147 21 24 12 2 0 11 chain 44463 chr10 135534747 + 14555560 14556042 L1PA3long 6157 - 2072 2554 63148 482 chain 186093 chr10 135534747 + 14556042 14558116 L1PA3long 6157 + 4090 6157 20407 221 1 0 488 4 0 1067 2 1 31 1 0 259 chain 6527 chr10 135534747 + 14631655 14631769 L1PA8 5853 + 5696 5808 181036 44 2 1 19 17 16 32 chain 2617 chr10 135534747 + 14661769 14661818 L1ME1 1623 - 866 920 231468 6 0 6 20 5 4 18 chain 20678 chr10 135534747 + 14662532 14662776 L1PA7 6471 - 1 245 125041 244 chain 4602 chr10 135534747 + 14685743 14685799 MLT2B4 540 - 432 488 199598 56 chain 10984 chr10 135534747 + 14703004 14703239 MSTA 426 + 170 423 156253 31 72 70 25 4 24 103 chain 39718 chr10 135534747 + 14704796 14705344 MLT2A2 560 + 0 560 69730 183 1 0 213 5 17 68 40 40 28 0 1 10 chain 7676 chr10 135534747 + 14705403 14705493 5S 121 - 31 121 173069 90 chain 17667 chr10 135534747 + 14706492 14706710 Tigger3a 397 + 155 373 133781 218 chain 33701 chr10 135534747 + 14721650 14722101 MLT2A2 560 + 0 560 78094 140 1 2 38 1 0 122 2 111 147 chain 29557 chr10 135534747 + 14724549 14724900 L1PA7 6471 + 6119 6470 86384 351 chain 40391 chr10 135534747 + 14729895 14730438 MLT2A2 560 + 0 560 68754 9 0 1 396 0 11 65 41 46 32 chain 100864 chr10 135534747 + 14762847 14764015 L1PA6 6164 - 4 1169 36547 7 3 0 368 2 1 469 5 6 314 chain 44240 chr10 135534747 + 14771652 14772203 L1PA8 5853 + 5309 5853 63897 255 1 0 46 2 0 70 1 0 7 2 1 52 2 1 19 1 0 93 chain 15195 chr10 135534747 + 14776375 14776602 MER30 238 + 0 234 140788 89 23 33 71 3 0 41 chain 287451 chr10 135534747 + 14785786 14789471 L1PA10 4194 - 33 3784 14191 11 1 0 17 0 1 16 3 0 227 0 5 271 0 1 149 0 2 325 0 84 32 0 1 55 5 0 4 39 0 232 0 2 51 4 5 5 0 2 27 6 7 473 0 2 34 11 11 218 6 10 32 3 0 5 0 1 72 0 1 96 0 1 95 0 1 58 0 1 492 0 3 496 0 3 16 2 3 21 2 1 73 chain 57361 chr10 135534747 + 14819228 14819921 L1PA6 6164 + 5475 6162 54308 376 0 6 7 6 0 146 0 1 145 7 0 6 chain 5455 chr10 135534747 + 14821130 14821191 MER41B 635 + 24 85 190479 61 chain 181702 chr10 135534747 + 14835368 14837370 L1PA4 6152 + 4149 6152 20820 1852 0 1 150 chain 2056 chr10 135534747 + 14854449 14854474 MER51A 677 + 265 290 219176 25 chain 3371 chr10 135534747 + 14854474 14854511 MER51A 677 + 199 236 217658 37 chain 7386 chr10 135534747 + 14859279 14859367 L1PB3 3668 - 187 275 174865 88 chain 5856 chr10 135534747 + 14863461 14863554 MER2 342 + 159 248 186626 63 13 9 17 chain 151840 chr10 135534747 + 14906338 14908057 L1PA5 6144 - 6 1743 24360 296 0 7 241 0 1 72 0 2 600 1 0 204 0 9 305 chain 28717 chr10 135534747 + 14934998 14935301 AluYf4 310 - 7 310 90267 303 chain 24172 chr10 135534747 + 15005113 15005393 AluSp 311 - 30 311 109368 170 0 1 110 chain 54332 chr10 135534747 + 15015923 15016570 HERVE-int 4064 - 3417 4064 56142 24 15 16 86 1 0 521 chain 181845 chr10 135534747 + 15022511 15024699 HERVE-int 4064 - 1875 4064 20801 84 1 0 43 5 8 519 1 2 220 0 6 6 14 8 482 4 1 703 0 1 106 chain 345682 chr10 135534747 + 15032828 15036886 HERVE-int 4064 - 0 4064 11739 588 1 0 70 0 10 1003 1 0 4 0 1 41 0 1 135 3 0 676 10 11 713 4 1 202 0 1 607 chain 173493 chr10 135534747 + 15055299 15057355 HERVE-int 4064 - 0 2074 21654 488 0 13 87 1 0 71 2 0 339 0 1 279 0 9 85 2 1 586 1 0 115 chain 28615 chr10 135534747 + 15067907 15068206 AluYb8 318 - 19 318 90676 299 chain 33212 chr10 135534747 + 15069763 15070259 HERV1_LTRa 508 + 0 508 78860 27 55 66 319 0 1 24 0 1 10 0 2 5 10 7 46 chain 16522 chr10 135534747 + 15071179 15071474 THE1B 368 - 62 368 136852 5 0 2 13 7 9 37 0 8 18 40 39 6 1 0 52 5 6 111 chain 32568 chr10 135534747 + 15080006 15080404 THE1B-int 1605 + 1206 1605 79913 197 0 1 189 1 0 6 0 1 5 chain 7270 chr10 135534747 + 15096348 15096463 MER50 708 + 570 676 175652 84 15 6 16 chain 38074 chr10 135534747 + 15114451 15114954 LTR19A 502 - 0 496 72027 158 0 1 42 1 0 59 3 0 8 5 4 147 3 0 77 chain 31878 chr10 135534747 + 15119948 15120323 L1PA7 6471 - 4 384 81049 241 0 5 134 chain 4432 chr10 135534747 + 15126733 15126816 MER51A 677 - 333 436 201564 52 18 38 13 chain 19453 chr10 135534747 + 15171688 15171928 AluSg 306 + 61 302 128806 152 0 1 88 chain 31376 chr10 135534747 + 15180862 15181248 MLT2A1 477 + 0 385 81861 168 14 12 24 0 1 180 chain 22618 chr10 135534747 + 15193058 15193344 AluSp 311 - 13 300 117495 155 4 5 94 0 1 6 1 0 26 chain 25224 chr10 135534747 + 15229210 15229517 AluY 311 + 4 311 103611 307 chain 34726 chr10 135534747 + 15249234 15249732 MLT2A1 477 - 0 473 76580 6 0 4 40 1 0 7 4 0 12 21 5 6 6 0 12 4 0 10 0 4 166 1 2 32 3 0 167 chain 25725 chr10 135534747 + 15266479 15266838 THE1B 368 + 0 368 101192 172 1 0 28 1 0 9 1 5 18 0 8 66 7 6 56 chain 6410 chr10 135534747 + 15276369 15276464 MER51A 677 - 19 129 181945 45 1 0 7 3 19 39 chain 9806 chr10 135534747 + 15281816 15281950 Tigger4a 237 - 9 161 161572 37 2 20 95 chain 457618 chr10 135534747 + 15311923 15317247 L1PA5 6144 + 0 6130 8487 127 1 15 17 8 20 461 0 1 528 9 0 264 0 1 191 0 2 180 2 0 199 1 0 301 7 0 176 0 1 432 0 1 759 5 0 26 1 14 1193 0 785 436 chain 28940 chr10 135534747 + 15329784 15330308 L1PB1 5432 - 9 500 89270 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 7 2 0 17 23 12 5 1 0 5 0 1 4 1 0 10 1 0 35 1 0 15 2 1 52 2 0 9 13 9 4 1 0 33 1 0 10 1 0 52 1 0 88 1 2 29 chain 15899 chr10 135534747 + 15415890 15416087 MER107 203 - 0 203 138662 39 0 2 9 0 4 149 chain 7957 chr10 135534747 + 15434893 15434988 L1PA8 5853 - 272 366 171293 17 1 0 77 chain 9163 chr10 135534747 + 15456105 15456574 MER75 514 - 0 135 164745 16 0 4 24 340 2 89 chain 16498 chr10 135534747 + 15459976 15460268 THE1B 368 + 0 306 136928 111 0 3 6 2 0 39 53 50 4 0 1 13 7 22 57 chain 36243 chr10 135534747 + 15463738 15464182 L1PA7 6471 - 1 445 74564 93 8 0 8 0 8 335 chain 107161 chr10 135534747 + 15467196 15468639 LTR12C 1709 - 0 1709 34926 84 1 0 67 1 0 330 35 4 106 3 160 110 0 118 121 1 0 4 0 1 25 5 6 62 0 1 21 33 17 5 0 3 83 0 43 41 14 6 291 chain 9271 chr10 135534747 + 15474232 15474383 MER1A 529 + 394 529 164212 58 27 11 66 chain 14405 chr10 135534747 + 15485601 15485784 L1PB4 2604 - 318 501 143196 183 chain 24087 chr10 135534747 + 15517494 15517789 L1MA3 4352 + 3738 4035 109813 90 0 2 205 chain 3902 chr10 135534747 + 15522829 15522875 MADE1 96 - 50 96 208814 46 chain 28320 chr10 135534747 + 15532473 15532774 AluYa5 310 - 9 310 91871 301 chain 4988 chr10 135534747 + 15532793 15532859 MADE1 96 + 0 95 195271 30 0 29 36 chain 4957 chr10 135534747 + 15544523 15544586 L1MB3 1562 - 155 217 195603 56 1 0 6 chain 108010 chr10 135534747 + 15576785 15578189 LTR12C 1709 + 0 1709 34709 190 18 4 48 17 65 160 1 0 182 0 280 183 9 6 106 11 4 253 0 4 20 1 0 116 5 4 84 chain 3889 chr10 135534747 + 15580606 15580657 L1PA3long 6157 + 6107 6157 209047 17 1 0 33 chain 10734 chr10 135534747 + 15582158 15582447 L1MA4 2864 - 64 319 157260 33 2 0 9 92 61 4 1 0 19 22 19 86 1 4 20 chain 4524 chr10 135534747 + 15586444 15586506 MLT1C 463 + 360 438 200500 10 0 16 52 chain 24403 chr10 135534747 + 15594540 15594823 L1PA7 6471 - 6 288 108060 258 1 0 24 chain 36574 chr10 135534747 + 15625089 15625521 L1PA7 6471 + 6036 6468 74132 37 0 1 200 1 0 194 chain 11614 chr10 135534747 + 15642121 15642249 L1PA5 6144 - 10 138 153832 128 chain 4617 chr10 135534747 + 15667654 15667724 MLT1B 390 + 11 79 199434 19 6 4 45 chain 39840 chr10 135534747 + 15669749 15670706 MER41B 635 + 0 635 69557 87 0 3 37 1 2 64 0 1 71 4 0 181 42 38 13 1 3 11 6 7 31 346 24 62 chain 34159 chr10 135534747 + 15671132 15671633 PRIMA4_LTR 623 + 0 514 77403 88 5 4 11 5 16 68 11 7 67 1 0 7 20 30 90 2 0 126 chain 18209 chr10 135534747 + 15672837 15673068 L1PA7 6471 - 667 897 132312 191 1 0 39 chain 56612 chr10 135534747 + 15673068 15673727 L1PA7 6471 + 5813 6469 54770 644 3 0 12 chain 30012 chr10 135534747 + 15689448 15689760 AluYb8 318 - 6 318 84771 312 chain 501557 chr10 135534747 + 15706517 15712129 L1PA4 6152 - 1 6146 6752 332 1 2 1182 1 0 761 0 1 2162 0 1 648 0 6 433 0 525 92 chain 70952 chr10 135534747 + 15739928 15740988 L1PB1 5432 - 9 1031 47946 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 20 9 4 1 0 15 1 0 44 1 0 15 2 1 52 2 0 9 6 2 13 1 0 5 2 1 22 22 18 473 1 2 43 3 0 179 chain 50066 chr10 135534747 + 15803096 15803665 L1PA4 6152 - 12 582 58969 131 0 1 438 chain 44480 chr10 135534747 + 15814415 15814917 L1PA3long 6157 - 0 507 63603 12 5 10 485 chain 175029 chr10 135534747 + 15814928 15816857 L1PA3long 6157 + 3712 5649 21456 182 1 0 442 0 3 965 0 4 76 1 0 188 0 3 74 chain 76980 chr10 135534747 + 15891957 15892989 MER11B 1079 + 0 1079 44979 220 0 5 131 1 5 5 1 0 169 13 12 28 0 4 155 17 7 26 0 2 51 7 8 16 0 44 163 1 0 28 chain 502155 chr10 135534747 + 15914498 15920674 L1PA6 6164 - 5 6164 6716 61 4 0 100 18 0 43 4 0 118 4 0 522 1 0 143 0 2 165 15 16 347 0 1 272 0 4 50 1 0 608 2 0 200 0 4 313 0 1 861 2 4 49 2 0 5 10 12 568 0 2 602 0 5 277 0 17 99 2 1 98 22 22 51 2 0 66 19 0 264 3 4 4 1 0 178 chain 6466 chr10 135534747 + 15942496 15942594 L1PA11 4918 + 4410 4506 181506 42 0 1 21 2 0 11 4 3 18 chain 15099 chr10 135534747 + 15944900 15945059 AluYb8 318 - 13 172 141037 159 chain 557780 chr10 135534747 + 15957730 15963752 L1PA2 6032 - 1 6025 528 13 1 0 4328 0 2 1544 0 1 136 chain 16046 chr10 135534747 + 15980338 15980548 Tigger3a 397 - 49 258 138224 156 1 0 53 chain 60110 chr10 135534747 + 16023438 16024146 L1PA5 6144 - 9 724 52767 268 4 11 436 chain 42027 chr10 135534747 + 16024146 16024602 L1PA5 6144 + 4967 5423 66590 456 chain 29021 chr10 135534747 + 16025156 16025466 AluYa5 310 - 0 310 88903 310 chain 2866 chr10 135534747 + 16037654 16037688 L1MB1 2102 - 818 852 227564 34 chain 79488 chr10 135534747 + 16059703 16060595 L1PA5 6144 - 1 899 43833 805 0 1 42 0 5 45 chain 76978 chr10 135534747 + 16095080 16096148 L1PA8 5853 - 0 1071 44982 91 3 2 19 2 1 38 0 3 22 1 0 65 6 4 46 5 4 188 25 26 114 0 1 87 0 1 129 0 2 68 0 1 159 chain 17433 chr10 135534747 + 16104793 16105007 L1PA4 6152 - 0 216 134428 71 0 2 68 1 2 5 1 0 68 chain 112325 chr10 135534747 + 16125017 16126289 L1PA4 6152 - 6 1280 33583 137 1 0 11 0 2 448 1 2 674 chain 12240 chr10 135534747 + 16131235 16131509 L1MB1 2102 + 1814 2066 151252 36 29 15 10 1 0 61 16 14 57 37 32 27 chain 46110 chr10 135534747 + 16138745 16139261 L1PA3long 6157 + 5641 6157 61935 516 chain 8868 chr10 135534747 + 16152600 16152713 MER30 238 - 5 116 166295 34 3 0 60 0 1 16 chain 33167 chr10 135534747 + 16165834 16166274 MLT2A1 477 + 0 477 78959 169 4 1 48 1 0 94 0 1 72 4 44 48 chain 3055 chr10 135534747 + 16166529 16166565 MLT1B 390 - 63 99 223904 36 chain 257443 chr10 135534747 + 16169190 16172046 L1PA3long 6157 - 0 2857 15850 259 1 0 72 1 0 799 1 0 353 0 2 719 0 1 167 1 2 483 chain 81015 chr10 135534747 + 16172046 16172930 L1PA3long 6157 + 2403 3287 43136 884 chain 3474 chr10 135534747 + 16180143 16180293 Charlie2a 992 - 571 745 215770 30 93 116 23 0 1 4 chain 22848 chr10 135534747 + 16180457 16180750 AluSg7 307 - 12 307 116355 34 3 4 125 0 1 131 chain 9852 chr10 135534747 + 16189747 16189870 THE1C 375 + 253 375 161335 97 1 0 25 chain 9840 chr10 135534747 + 16189921 16190048 THE1C 375 + 248 375 161394 4 0 1 97 1 0 25 chain 445380 chr10 135534747 + 16207422 16213513 HERVL-int 5654 - 0 5654 8891 47 0 1 170 0 4 51 2 0 30 0 4 954 17 0 655 4 5 25 460 9 127 5 6 10 10 7 537 1 23 442 1 0 640 0 2 104 1 2 8 1 0 45 0 4 624 1 0 7 0 1 163 0 2 5 4 2 6 1 0 47 2 1 9 0 5 652 16 10 103 1 2 103 chain 518762 chr10 135534747 + 16213586 16219723 L1PA6 6164 - 10 6160 5296 838 0 1 4 0 3 8 0 4 653 1 0 37 0 1 440 0 1 409 0 1 628 0 1 428 2 0 371 0 1 147 1 0 1246 0 4 429 0 1 33 1 0 461 chain 10911 chr10 135534747 + 16228218 16228358 ERVL-B4-int 2334 - 2111 2251 156550 140 chain 3921 chr10 135534747 + 16231182 16231227 MLT2A2 560 + 515 560 208543 45 chain 9897 chr10 135534747 + 16234160 16234312 MER47A 366 + 133 296 161086 61 1 2 53 8 18 29 chain 34812 chr10 135534747 + 16240395 16240872 LTR2B 499 + 9 499 76453 5 1 0 57 7 0 33 6 13 12 0 12 139 0 1 25 0 1 12 1 0 52 0 1 127 chain 63552 chr10 135534747 + 16248762 16249819 L1PB1 5432 - 8 1017 51217 4 1 0 16 1 0 7 7 6 15 9 8 22 2 0 10 7 5 23 60 5 7 3 0 16 1 0 3 0 22 18 1 0 16 2 1 51 2 0 11 6 2 10 1 0 8 1 0 24 1 0 5 7 8 109 3 6 170 1 4 189 5 6 202 chain 8168 chr10 135534747 + 16249819 16249912 U6 107 - 0 93 170127 93 chain 194439 chr10 135534747 + 16258280 16260514 L1PA5 6144 - 12 2254 19633 136 1 0 111 1 0 583 1 5 952 0 4 197 0 1 170 0 1 82 chain 114288 chr10 135534747 + 16260515 16261805 L1PA5 6144 + 2585 3873 32998 616 0 1 468 3 0 203 chain 69055 chr10 135534747 + 16264564 16265569 MER11A 1151 - 1 1141 48782 36 1 5 18 7 6 210 23 57 15 1 0 56 0 4 109 3 0 72 24 24 153 0 1 38 5 13 31 1 0 7 1 3 15 1 0 80 2 0 12 15 7 15 0 99 54 chain 19473 chr10 135534747 + 16281945 16282293 THE1B 368 + 0 357 128740 44 66 79 53 1 0 107 12 9 14 1 0 5 0 1 45 chain 22065 chr10 135534747 + 16310541 16310930 L1PA16 3655 - 36 411 119943 15 62 41 228 0 9 19 29 27 36 chain 87323 chr10 135534747 + 16348309 16349386 L1PA7 6471 - 12 1091 40636 145 2 1 91 1 0 467 6 6 132 0 3 220 0 1 13 chain 56477 chr10 135534747 + 16349388 16350037 L1PA7 6471 + 4729 5378 54862 649 chain 2917 chr10 135534747 + 16354206 16354257 MER53 195 + 9 56 226731 26 7 3 18 chain 6379 chr10 135534747 + 16364631 16364710 MLT1D 503 + 424 503 182183 79 chain 28376 chr10 135534747 + 16385147 16385457 AluYa5 310 - 5 310 91677 12 5 0 293 chain 9271 chr10 135534747 + 16390524 16390882 MLT1B 390 + 0 344 164214 24 228 214 106 chain 47871 chr10 135534747 + 16396411 16397033 PRIMA4_LTR 623 + 0 623 60577 86 2 1 171 4 5 13 0 1 106 5 1 24 0 4 211 chain 4072 chr10 135534747 + 16415258 16415305 L1ME2z 1083 + 883 930 206294 47 chain 55353 chr10 135534747 + 16459245 16459922 MER4E 760 + 88 760 55486 82 7 0 199 0 2 75 1 0 86 1 0 61 0 2 165 chain 23993 chr10 135534747 + 16468233 16468569 THE1C 375 - 40 375 110368 41 15 17 19 1 0 9 1 2 123 3 0 124 chain 133721 chr10 135534747 + 16489743 16491378 HERVL-int 5654 - 1979 3614 27273 102 0 1 586 6 5 941 chain 26801 chr10 135534747 + 16493049 16493398 MLT2A2 560 - 206 560 96983 150 3 4 111 0 3 54 0 1 31 chain 22890 chr10 135534747 + 16506799 16507152 THE1B 368 - 12 368 116144 44 1 2 7 1 0 53 2 1 17 1 0 18 8 13 32 1 0 97 8 9 63 chain 4718 chr10 135534747 + 16518005 16518060 U2 167 + 0 55 198301 55 chain 18202 chr10 135534747 + 16584470 16584814 THE1D 372 + 0 372 132327 61 1 19 85 38 43 16 17 23 82 17 16 27 chain 21300 chr10 135534747 + 16587946 16588197 AluSc 308 + 40 290 122863 217 1 0 33 chain 20994 chr10 135534747 + 16589773 16590093 L1PA8 5853 - 0 313 123942 93 0 1 4 17 15 36 10 7 88 2 0 45 1 0 24 chain 5973 chr10 135534747 + 16590093 16590164 MSTA 426 + 354 426 185481 26 0 1 45 chain 8964 chr10 135534747 + 16604090 16604210 MER75 514 - 0 125 165805 16 1 6 103 chain 16597 chr10 135534747 + 16652534 16652835 MER1A 529 + 218 516 136680 191 28 29 20 46 42 16 chain 313609 chr10 135534747 + 16656857 16660982 L1PA8 5853 + 1663 5844 12871 22 0 1 130 0 3 195 5 4 454 0 1 8 0 4 51 0 2 34 0 3 46 0 1 4 1 0 207 0 4 51 10 9 32 0 4 30 0 4 26 0 8 48 0 2 18 3 7 145 18 1 39 0 2 5 12 13 142 11 9 266 7 12 14 0 1 19 5 18 53 0 7 44 0 6 468 1 0 240 0 4 331 0 1 93 6 8 65 0 2 36 0 1 386 6 4 53 1 0 46 7 5 54 0 1 8 2 1 8 0 4 7 14 9 33 2 1 103 chain 24180 chr10 135534747 + 16662576 16662857 AluY 311 + 14 296 109318 118 0 1 163 chain 36660 chr10 135534747 + 16724209 16724778 MER41C 542 + 2 542 74012 47 0 1 183 0 3 76 67 34 14 2 0 25 2 3 69 19 20 65 chain 52584 chr10 135534747 + 16725633 16726415 MER4E1 777 - 17 777 57246 53 6 7 128 0 2 7 55 26 60 0 1 65 0 2 106 6 5 244 6 7 29 1 2 16 chain 43025 chr10 135534747 + 16727288 16727828 MER41A 554 - 0 541 65393 356 13 14 171 chain 81568 chr10 135534747 + 16751004 16751931 L1PA4 6152 - 0 940 42943 6 0 5 41 0 4 794 0 4 86 chain 7761 chr10 135534747 + 16771908 16772315 MSTB1 431 - 0 413 172540 16 1 0 63 288 295 39 chain 58549 chr10 135534747 + 16780706 16781445 L1PA8 5853 - 2 732 53675 91 1 0 18 1 0 54 15 12 21 1 0 45 2 0 46 1 0 443 chain 9546 chr10 135534747 + 16827563 16827694 MSTA 426 - 294 426 162851 98 5 6 28 chain 24309 chr10 135534747 + 16847388 16847682 AluY 311 + 0 299 108604 133 4 0 119 0 9 38 chain 24429 chr10 135534747 + 16849749 16850042 AluY 311 + 9 303 107919 123 0 1 170 chain 75722 chr10 135534747 + 16881372 16882228 L1PA4 6152 + 5298 6152 45638 701 7 0 142 0 5 6 chain 36267 chr10 135534747 + 16907501 16907963 LTR12F 595 + 0 588 74539 92 0 37 17 5 93 125 0 1 102 0 3 5 3 0 113 chain 3226 chr10 135534747 + 16915873 16915912 MIRb 242 + 100 139 220484 39 chain 25522 chr10 135534747 + 16928792 16929086 AluSp 311 - 17 311 102129 294 chain 28933 chr10 135534747 + 16950871 16951183 AluYb8 318 - 9 318 89310 183 3 0 126 chain 24044 chr10 135534747 + 16959935 16960430 L1PREC2 3366 - 318 773 110093 36 8 6 24 37 23 7 3 0 30 2 0 13 55 42 13 3 0 4 1 0 44 1 0 54 2 0 63 2 3 93 chain 22424 chr10 135534747 + 16972983 16973275 AluYk4 311 + 10 294 118361 122 18 10 152 chain 23595 chr10 135534747 + 17001356 17001649 AluSp 311 + 10 301 112604 24 0 1 260 3 0 6 chain 172346 chr10 135534747 + 17020774 17022841 L1PA7 6471 + 4391 6461 21780 106 0 4 26 0 1 64 7 3 360 5 6 660 1 0 45 0 3 41 8 6 137 0 1 607 chain 59375 chr10 135534747 + 17033714 17034400 L1PA5 6144 + 5458 6144 53190 686 chain 5077 chr10 135534747 + 17036045 17036101 L1PA5 6144 + 6047 6103 194325 56 chain 51392 chr10 135534747 + 17042874 17043587 LTR12_ 688 - 0 688 58035 406 37 38 100 24 0 75 6 5 39 1 0 25 chain 58101 chr10 135534747 + 17053201 17053930 LTR12 884 - 15 884 53924 100 0 4 112 4 8 99 7 9 161 2 0 121 0 132 123 chain 401457 chr10 135534747 + 17055505 17060273 HERV9-int 5642 - 818 5637 10043 288 7 9 375 0 47 65 0 4 1181 0 1 92 1 3 1649 1 0 6 3 0 297 24 23 779 chain 52439 chr10 135534747 + 17060299 17060974 LTR12 884 - 0 884 57328 143 0 103 262 2 0 23 24 0 45 0 132 176 chain 24812 chr10 135534747 + 17072011 17072352 MER1A 529 + 184 522 105827 111 16 17 139 3 0 4 1 0 67 chain 9027 chr10 135534747 + 17133912 17134041 MER41B 635 + 485 615 165460 25 4 6 4 1 0 95 chain 33427 chr10 135534747 + 17134371 17134904 MER41B 635 + 15 547 78520 74 8 7 30 0 1 56 6 7 4 1 0 197 73 69 5 0 3 79 chain 32557 chr10 135534747 + 17163344 17163705 L1PA4 6152 + 5791 6151 79935 27 1 0 333 chain 2897 chr10 135534747 + 17167597 17167669 MER102c 337 - 16 92 227099 13 30 34 29 chain 282264 chr10 135534747 + 17205363 17208529 L1PA4 6152 + 2981 6152 14522 6 1 0 271 0 5 253 1 0 1517 0 1 248 1 0 535 1 2 219 0 1 113 chain 23743 chr10 135534747 + 17210470 17210802 THE1B 368 + 0 356 111816 44 1 16 109 1 0 22 3 1 16 5 17 131 chain 67782 chr10 135534747 + 17227268 17228054 L1PA5 6144 + 5333 6136 49329 276 0 13 188 0 1 142 2 3 108 0 2 70 chain 3358 chr10 135534747 + 17284672 17284710 MLT1B 390 - 330 368 217897 38 chain 44638 chr10 135534747 + 17304198 17304814 LTR10E 629 + 0 629 63441 164 0 2 128 2 1 57 0 1 118 0 14 73 26 24 41 1 0 6 chain 73135 chr10 135534747 + 17305287 17306296 MER11A 1151 - 0 1145 46956 66 1 0 117 0 1 51 0 1 56 6 40 13 1 0 124 9 12 111 13 12 9 1 2 88 7 8 51 0 1 54 0 2 38 4 0 137 1 100 51 chain 11180 chr10 135534747 + 17329905 17330048 MER4A 717 + 575 717 155514 136 1 0 6 chain 65060 chr10 135534747 + 17342549 17343333 L1PA7 6471 - 2 786 50546 10 2 0 35 0 1 292 0 1 445 chain 3333 chr10 135534747 + 17350047 17350084 tRNA-Gly-GGA 38 - 1 38 218364 37 chain 17637 chr10 135534747 + 17350946 17351302 THE1B 368 - 0 368 133890 57 1 0 4 6 15 49 63 66 42 29 30 105 chain 93053 chr10 135534747 + 17353423 17354587 L1PA8A 6298 + 5113 6280 38643 41 0 1 334 3 6 677 20 19 89 chain 72412 chr10 135534747 + 17373795 17375056 L1PA8 5853 - 0 1000 47299 31 0 1 61 1 0 19 2 1 42 4 11 6 1 0 73 4 0 43 2 1 369 274 4 107 0 2 10 6 5 58 1 3 34 0 1 44 0 5 69 chain 174287 chr10 135534747 + 17424565 17426994 MER4-int 2692 + 155 2643 21565 25 2 1 415 0 1 31 0 3 83 18 17 33 1 5 143 1 0 187 0 4 20 0 3 23 2 1 25 1 0 189 2 0 22 5 21 25 6 5 25 5 6 81 0 4 199 1 3 130 0 4 179 0 1 30 5 6 23 2 0 13 0 1 11 1 4 26 4 0 88 5 18 21 0 1 4 1 0 133 0 1 13 1 0 26 3 5 22 1 0 41 2 15 5 2 0 67 chain 3882 chr10 135534747 + 17429651 17429697 LTR80A 572 - 41 87 209150 46 chain 211647 chr10 135534747 + 17442540 17444935 L1PA5 6144 + 3739 6144 18385 15 0 3 41 0 1 1228 1 0 270 0 4 467 0 5 204 7 6 143 1 0 18 chain 8461 chr10 135534747 + 17445506 17445608 HY1 111 + 0 102 168503 102 chain 29391 chr10 135534747 + 17474676 17475108 MER57A1 433 + 0 422 87116 28 0 3 227 59 46 118 chain 39371 chr10 135534747 + 17478384 17478817 L1PA4 6152 - 12 445 70215 433 chain 6994 chr10 135534747 + 17479026 17479120 MER65C 458 + 323 416 177508 72 1 0 21 chain 28934 chr10 135534747 + 17500748 17501058 AluYa5 310 - 0 310 89306 310 chain 22286 chr10 135534747 + 17512250 17512603 THE1B 368 + 9 368 118968 99 7 8 58 22 18 56 1 2 51 2 0 8 4 14 45 chain 86704 chr10 135534747 + 17528259 17529210 L1PA3long 6157 - 808 1759 40880 951 chain 71059 chr10 135534747 + 17529210 17530001 L1PA3long 6157 + 5364 6157 47740 640 4 6 147 chain 2947 chr10 135534747 + 17535958 17535989 U2 167 + 0 31 226127 31 chain 4053 chr10 135534747 + 17557547 17557591 MLT1A0 366 - 65 109 206606 44 chain 90262 chr10 135534747 + 17564127 17565310 L1PA8 5853 - 0 1183 39553 93 1 0 19 2 1 14 5 0 36 14 12 10 0 1 59 2 0 36 13 12 365 1 4 182 0 2 151 0 5 32 5 6 143 chain 8143 chr10 135534747 + 17572144 17572248 MSTD 398 + 291 398 170270 32 0 2 60 0 1 12 chain 22647 chr10 135534747 + 17588032 17588305 L1PA7 6471 + 6195 6468 117347 273 chain 31132 chr10 135534747 + 17596503 17596909 MLT2A1 477 + 0 407 82283 11 0 1 130 0 1 25 1 5 37 2 0 180 1 0 5 1 0 7 1 0 5 chain 5312 chr10 135534747 + 17600448 17600551 MSTC 436 - 19 124 191900 51 5 6 13 16 17 18 chain 5518 chr10 135534747 + 17600642 17600702 LTR43 600 - 2 62 189861 60 chain 12613 chr10 135534747 + 17601898 17602134 L1MA4 2864 - 170 392 149793 23 12 9 20 1 0 31 10 11 88 26 15 25 chain 92628 chr10 135534747 + 17616933 17618068 L1PA7 6471 + 5328 6470 38776 4 1 0 90 1 3 196 1 0 159 0 1 51 11 13 285 1 2 130 4 9 194 2 0 5 chain 35934 chr10 135534747 + 17629315 17629771 LTR2 463 + 0 462 74976 61 1 5 61 0 3 168 14 13 151 chain 21565 chr10 135534747 + 17629868 17630149 MER4E1 777 + 483 770 121905 28 0 1 6 1 0 29 4 11 73 1 0 139 chain 22962 chr10 135534747 + 17657997 17658268 AluY 311 + 12 286 115795 244 6 9 21 chain 8671 chr10 135534747 + 17660418 17660547 LTR7 482 + 0 132 167351 99 13 16 17 chain 5161 chr10 135534747 + 17665471 17665593 L1PB3 3668 - 48 159 193434 8 1 0 13 8 5 12 1 0 13 14 10 30 3 1 19 chain 151246 chr10 135534747 + 17670347 17672000 SVA_F 1814 - 0 1716 24442 307 0 3 317 1 0 225 1 15 10 0 1 51 2 0 55 0 40 558 0 8 126 chain 168256 chr10 135534747 + 17672035 17674053 HERVH-int 3825 - 1704 3825 22255 100 0 10 295 4 31 379 22 40 485 0 3 12 0 2 7 0 1 57 2 1 38 6 56 15 0 1 8 1 0 10 1 0 38 5 0 3 1 0 529 chain 9652 chr10 135534747 + 17674053 17674160 LTR7Y 441 - 0 107 162338 107 chain 3622 chr10 135534747 + 17690225 17690311 LTR12F 595 + 215 282 213311 31 2 1 11 23 5 19 chain 460405 chr10 135534747 + 17759876 17764968 L1PA3long 6157 - 1068 6151 8388 1400 1 0 1926 1 0 842 0 1 184 1 0 23 7 0 707 chain 94154 chr10 135534747 + 17764978 17766016 L1PA3long 6157 + 5108 6146 38313 1038 chain 27847 chr10 135534747 + 17828742 17829116 THE1A 353 + 0 353 93537 103 28 7 243 chain 42438 chr10 135534747 + 17842905 17843453 MLT2A2 560 - 0 560 66094 12 0 2 133 0 11 222 12 11 169 chain 4391 chr10 135534747 + 17863420 17863475 MLT2D 439 + 5 60 202067 55 chain 47000 chr10 135534747 + 17917296 17918050 L1PB1 5432 - 6 728 61211 4 1 0 18 1 0 7 8 7 20 1 0 24 2 0 10 13 10 18 24 14 13 1 0 44 1 0 15 1 0 54 2 0 9 2 0 3 2 0 10 1 0 8 1 0 24 13 11 399 chain 5678 chr10 135534747 + 17944816 17944882 U4 144 + 0 66 188316 66 chain 3157 chr10 135534747 + 18056704 18056741 Charlie4a 502 + 130 167 221798 37 chain 27716 chr10 135534747 + 18075730 18076104 THE1A 353 + 0 353 93986 103 28 7 243 chain 42569 chr10 135534747 + 18089893 18090441 MLT2A2 560 - 0 560 65939 12 0 2 133 0 11 222 12 11 169 chain 4391 chr10 135534747 + 18110392 18110447 MLT2D 439 + 5 60 202066 55 chain 46917 chr10 135534747 + 18164213 18164967 L1PB1 5432 - 6 728 61292 4 1 0 18 1 0 7 8 7 20 1 0 24 2 0 10 13 10 18 24 14 13 1 0 44 1 0 15 1 0 54 2 0 9 2 0 3 2 0 10 1 0 8 1 0 24 13 11 399 chain 5547 chr10 135534747 + 18191730 18191796 U4 144 + 0 66 189589 66 chain 47810 chr10 135534747 + 18234717 18235291 L1P3 4156 - 17 588 60562 12 15 14 6 2 0 539 chain 81708 chr10 135534747 + 18235291 18236304 L1P3 4156 + 2511 3539 42887 104 0 1 18 1 3 10 3 2 444 0 4 390 0 1 10 0 8 33 chain 79332 chr10 135534747 + 18238919 18240029 LTR12D 1347 - 0 1347 43892 265 1 0 34 0 98 209 1 43 114 0 72 75 1 2 59 13 0 43 81 27 18 4 96 192 chain 4428 chr10 135534747 + 18273677 18273748 L1MB2 1706 - 47 117 201605 28 2 3 17 1 0 13 1 0 9 chain 24921 chr10 135534747 + 18285647 18285979 AluY 311 + 3 310 105216 120 1 0 9 0 1 75 17 0 47 15 7 48 chain 6926 chr10 135534747 + 18305964 18306052 LTR23 429 + 311 401 177989 83 0 2 5 chain 51099 chr10 135534747 + 18314172 18314757 L1PA4 6152 - 9 593 58252 499 1 0 85 chain 555155 chr10 135534747 + 18319580 18325604 L1PA2 6032 - 11 6032 809 132 6 0 3623 0 4 1951 1 0 311 chain 35939 chr10 135534747 + 18346535 18347498 MER4A1 472 - 0 472 74972 66 0 11 72 1 2 133 503 0 188 chain 35099 chr10 135534747 + 18346823 18347237 L1PA5 6144 - 0 415 76049 11 2 3 401 chain 3490 chr10 135534747 + 18367057 18367096 LTR37B 484 + 441 480 215514 39 chain 40132 chr10 135534747 + 18377347 18377801 L1PA5 6144 - 433 893 69135 411 0 6 43 chain 38986 chr10 135534747 + 18377801 18378254 L1PA5 6144 + 5691 6141 70756 293 0 3 4 1 0 6 1 0 138 4 0 6 chain 25345 chr10 135534747 + 18408011 18408373 THE1C 375 + 5 373 102985 36 0 3 24 1 2 216 6 8 13 8 9 34 1 0 23 chain 18399 chr10 135534747 + 18421774 18422035 L1PA8 5853 - 0 256 131789 6 0 1 86 1 0 19 2 1 39 9 8 11 1 0 74 2 0 11 chain 15949 chr10 135534747 + 18422038 18422227 L1PA8 5853 + 5383 5571 138521 181 1 0 7 chain 49199 chr10 135534747 + 18426636 18427429 L1PB1 5432 - 8 772 59597 4 1 0 16 1 0 13 1 0 21 1 0 22 2 0 12 12 9 14 8 0 13 2 0 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 24 19 5 1 0 20 4 0 8 0 3 50 16 16 221 1 4 152 chain 15861 chr10 135534747 + 18455647 18455832 L1PA4 6152 + 5965 6151 138773 181 0 1 4 chain 27255 chr10 135534747 + 18475371 18475767 MSTA 426 - 34 426 95416 152 6 4 22 2 0 6 16 16 11 1 2 49 1 0 130 chain 28118 chr10 135534747 + 18480389 18480910 L1PB1 5432 - 8 497 92581 4 1 0 16 1 0 13 1 0 21 1 0 17 0 1 6 24 19 19 23 12 15 1 0 44 1 0 18 1 0 52 2 0 9 16 11 9 1 0 21 16 14 168 chain 5679 chr10 135534747 + 18495861 18495935 MER44A 345 + 76 158 188314 25 0 8 49 chain 20207 chr10 135534747 + 18528261 18528582 L1PB4 2604 - 32 334 126508 18 0 1 4 2 0 33 0 16 112 48 14 104 chain 12733 chr10 135534747 + 18530328 18530476 L1PA7 6471 + 6274 6423 149317 7 0 1 141 chain 85619 chr10 135534747 + 18571748 18572749 L1PA5 6144 + 5128 6135 41296 14 0 5 147 1 0 161 0 1 494 5 6 179 chain 20608 chr10 135534747 + 18573027 18573339 THE1B 368 - 61 368 125267 7 3 0 60 35 33 86 0 1 51 1 0 69 chain 27057 chr10 135534747 + 18575164 18575476 AluYk4 311 + 1 311 96086 122 2 0 188 chain 23609 chr10 135534747 + 18591310 18591779 L1PB1 5432 + 4998 5427 112525 14 0 2 89 13 11 24 1 0 9 1 0 9 2 0 3 2 0 9 2 0 53 23 15 40 5 4 16 3 0 6 16 6 19 2 0 5 1 0 14 2 0 26 1 0 15 1 0 4 1 0 13 1 0 19 1 0 4 chain 132993 chr10 135534747 + 18606826 18608525 L1PA8 5853 + 4115 5836 27422 75 1 3 563 3 24 229 0 2 75 2 3 43 0 3 429 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 76 chain 28877 chr10 135534747 + 18645867 18646170 AluYg6 310 - 6 309 89559 303 chain 13267 chr10 135534747 + 18648531 18648696 L1PA7 6471 - 2 163 147219 13 4 0 148 chain 105932 chr10 135534747 + 18660141 18661337 L1PA4 6152 - 0 1205 35274 6 0 5 139 2 1 103 1 0 75 0 6 870 chain 35095 chr10 135534747 + 18665398 18665891 LTR19A 502 - 0 502 76054 74 4 0 51 8 15 61 1 0 63 1 0 34 7 13 69 0 2 120 chain 25531 chr10 135534747 + 18707363 18707685 MER57A1 433 + 0 321 102096 291 1 0 30 chain 2947 chr10 135534747 + 18737567 18737598 MER5A 189 - 124 155 226166 31 chain 9093 chr10 135534747 + 18745408 18745571 MSTA 426 - 245 419 165103 19 29 36 16 3 7 96 chain 11311 chr10 135534747 + 18750430 18750624 MER1B 344 - 5 210 155024 29 1 0 25 19 22 47 9 18 64 chain 14367 chr10 135534747 + 18766166 18766366 MER41B 635 - 399 610 143322 103 19 30 78 chain 24952 chr10 135534747 + 18788264 18788571 AluSc5 308 + 0 308 105045 104 0 1 203 chain 92341 chr10 135534747 + 18801494 18802750 HSMAR1 1287 - 4 1278 38863 44 1 4 491 13 0 26 2 17 120 28 36 126 0 3 5 14 11 235 1 6 150 chain 133361 chr10 135534747 + 18862476 18864776 HERVIP10F-int 4088 + 1028 3241 27354 27 2 0 11 1 0 8 1 0 13 1 0 5 1 0 6 1 0 4 9 7 17 8 5 23 1 0 14 1 0 5 7 5 29 7 6 133 6 2 10 1 0 6 36 28 12 9 7 22 13 12 17 1 0 63 9 7 17 1 0 62 1 0 31 19 15 4 1 0 67 4 5 64 0 1 5 1 0 69 14 17 176 7 6 14 1 0 65 9 8 75 1 0 74 2 1 15 2 1 133 1 0 243 1 5 280 24 21 60 46 27 10 4 0 16 18 16 12 12 8 8 1 0 5 1 0 8 1 0 7 1 0 6 5 3 5 2 0 5 1 0 18 8 4 17 chain 35262 chr10 135534747 + 18866578 18867040 LTR10F 562 + 0 562 75845 106 0 84 43 0 3 13 14 28 223 1 0 62 chain 12570 chr10 135534747 + 18870767 18870938 MER41A 554 + 379 554 149966 29 10 14 132 chain 53875 chr10 135534747 + 18875177 18875944 LTR12_ 688 - 0 688 56443 236 103 0 289 0 25 114 1 0 24 chain 448223 chr10 135534747 + 18877121 18882797 L1PA8 5853 + 109 5848 8808 189 22 10 42 0 3 109 8 9 125 0 4 33 0 6 26 5 7 574 0 1 140 0 3 18 6 14 440 3 4 160 1 0 84 3 2 6 0 1 102 1 0 50 0 4 530 0 6 26 0 6 42 1 5 40 1 5 259 0 4 117 6 18 242 0 2 112 0 2 333 2 0 468 0 4 13 5 0 7 0 5 155 0 7 323 0 3 162 0 3 51 9 5 334 3 2 44 2 0 68 2 1 9 14 13 39 2 1 19 1 0 88 chain 28361 chr10 135534747 + 18886893 18887311 LTR7B 505 + 0 495 91726 107 1 11 43 9 84 7 9 0 28 0 2 40 0 1 42 5 4 72 15 14 40 chain 538294 chr10 135534747 + 18916347 18922351 L1PA3long 6157 + 19 6156 3103 133 0 1 190 0 4 339 0 3 81 6 134 608 0 1 806 0 1 1195 0 2 2487 7 0 152 chain 7697 chr10 135534747 + 18933335 18933457 Tigger4 2445 + 2119 2235 172956 67 3 1 17 0 1 8 6 1 21 chain 28849 chr10 135534747 + 19000503 19000873 LTR71B 605 - 0 381 89677 33 2 1 96 0 3 18 0 6 94 0 3 127 chain 142028 chr10 135534747 + 19013987 19015563 L1PA4 6152 - 1 1578 25818 1553 0 1 23 chain 3659 chr10 135534747 + 19023244 19023289 MADE1 96 + 49 94 212584 45 chain 39381 chr10 135534747 + 19025289 19025949 L1PA15 4387 + 3711 4356 70196 20 12 16 64 3 1 33 6 5 7 0 1 28 2 6 40 1 0 104 0 1 67 1 0 27 1 0 52 7 6 18 4 0 10 1 0 50 6 3 31 18 12 13 6 2 28 chain 42811 chr10 135534747 + 19041337 19041889 LTR10F 562 + 1 562 65640 105 1 29 20 28 0 77 0 3 10 0 6 311 chain 15567 chr10 135534747 + 19047861 19048192 L1PB1 5432 - 13 315 139674 15 1 0 14 1 2 18 1 0 24 2 0 14 51 36 16 1 0 44 1 0 14 1 0 46 9 7 10 2 0 3 2 0 9 1 0 13 1 0 17 chain 24932 chr10 135534747 + 19078370 19078719 THE1B 368 + 0 368 105151 35 14 29 108 3 2 22 1 3 33 1 0 74 0 4 58 chain 14760 chr10 135534747 + 19079380 19079562 L1P4 1494 - 860 1043 142064 81 0 1 101 chain 16120 chr10 135534747 + 19099786 19099991 L1PA6 6164 + 5962 6162 137995 40 4 1 151 2 0 8 chain 81550 chr10 135534747 + 19101479 19102585 MER11A 1151 - 9 1151 42957 158 0 1 11 1 0 51 0 1 58 42 0 26 25 1 150 0 1 145 0 1 79 0 3 12 0 2 148 6 2 64 1 0 73 1 100 55 chain 142233 chr10 135534747 + 19107262 19108852 L1PA4 6152 + 4548 6141 25770 876 0 1 621 0 2 93 chain 67994 chr10 135534747 + 19112784 19113656 L1PA7 6471 - 5 878 49250 8 3 0 130 22 24 96 3 2 583 1 4 26 chain 12750 chr10 135534747 + 19113657 19113804 L1PA7 6471 + 5439 5586 149255 147 chain 36743 chr10 135534747 + 19129870 19130348 MER1A 529 - 8 485 73889 187 1 0 4 0 1 262 11 10 13 chain 50622 chr10 135534747 + 19145574 19146162 LTR14C 587 - 0 587 58562 338 2 1 248 chain 27313 chr10 135534747 + 19160322 19160809 L1MA3 4352 - 6 493 95230 12 12 9 9 1 0 28 1 0 4 3 2 24 2 0 21 6 8 50 0 4 56 58 60 200 chain 41715 chr10 135534747 + 19172102 19172574 L1PA4 6152 - 9 481 67008 472 chain 28904 chr10 135534747 + 19191777 19192080 AluYa5 310 - 7 310 89441 303 chain 386239 chr10 135534747 + 19222492 19227204 L1PA7 6471 - 2 4759 10566 245 1 0 14 1 0 593 0 3 8 0 4 642 0 22 358 0 1 305 1 0 184 3 0 6 12 15 72 3 0 167 0 1 205 0 1 54 0 1 38 2 1 175 1 12 658 7 0 43 11 0 57 0 4 84 0 22 762 chain 101014 chr10 135534747 + 19239554 19240772 LTR12C 1709 - 0 1709 36510 283 0 1 197 0 4 22 0 485 368 0 1 85 0 1 154 5 4 104 chain 429995 chr10 135534747 + 19259383 19264327 L1PA5 6144 + 1183 6144 9307 93 6 1 406 5 19 177 0 1 434 1 0 660 0 1 2322 0 4 504 0 1 183 4 7 4 1 0 144 chain 87101 chr10 135534747 + 19278073 19279405 L1PA5 6144 - 13 1026 40737 297 0 1 55 321 0 259 1 0 50 0 2 349 chain 58838 chr10 135534747 + 19279405 19280112 L1PA5 6144 + 4430 5116 53393 517 22 1 168 chain 10573 chr10 135534747 + 19280112 19280243 THE1B-int 1605 - 1474 1605 157948 131 chain 14994 chr10 135534747 + 19280395 19280599 THE1B 368 - 154 360 141338 14 7 10 21 1 0 161 chain 487564 chr10 135534747 + 19282070 19287521 L1PA3long 6157 + 564 6156 7454 212 0 128 608 0 1 427 0 1 16 0 1 475 0 5 1345 1 2 575 0 4 943 1 0 700 0 1 148 chain 57553 chr10 135534747 + 19293363 19294006 L1PA5 6144 + 5485 6128 54208 643 chain 29698 chr10 135534747 + 19305700 19306051 L1PA7 6471 + 6114 6465 85839 351 chain 18962 chr10 135534747 + 19321458 19321730 L1PA8 5853 - 0 266 130200 93 1 0 13 8 7 49 1 0 14 1 0 67 2 0 23 chain 19795 chr10 135534747 + 19321730 19321963 L1PA8 5853 + 5354 5586 127832 210 1 0 22 chain 29308 chr10 135534747 + 19339009 19339315 AluYa5 310 - 4 310 87526 306 chain 14867 chr10 135534747 + 19352479 19352642 L1PA3long 6157 - 262 425 141729 163 chain 20921 chr10 135534747 + 19352643 19352869 L1PA3long 6157 + 5918 6144 124211 226 chain 564088 chr10 135534747 + 19377514 19383547 L1HS 6032 - 0 6032 236 5296 1 0 736 chain 43812 chr10 135534747 + 19387612 19388271 LTR9 672 - 7 672 64435 41 1 2 94 2 0 19 10 11 71 15 15 24 7 8 112 12 16 151 11 12 89 chain 29846 chr10 135534747 + 19397324 19397645 AluYb8 318 - 0 318 85297 200 3 0 118 chain 72705 chr10 135534747 + 19449106 19449905 L1P1 4361 - 432 1231 47165 799 chain 49722 chr10 135534747 + 19449905 19450444 L1HS 6032 + 5492 6031 59214 539 chain 3759 chr10 135534747 + 19451007 19451055 MER3 215 + 115 163 210965 48 chain 29343 chr10 135534747 + 19465295 19465602 AluYb8 318 - 11 318 87329 307 chain 6453 chr10 135534747 + 19496339 19496421 MER44B 551 - 42 124 181620 82 chain 3834 chr10 135534747 + 19504789 19504870 HSMAR2 1300 - 1206 1289 209867 19 19 23 13 2 0 28 chain 100002 chr10 135534747 + 19512491 19514064 L1PA7 6471 - 14 1298 36776 131 19 18 436 0 1 119 324 33 102 0 3 134 2 0 262 5 6 39 chain 4367 chr10 135534747 + 19526286 19526353 L1MA6 2487 - 83 147 202356 6 1 0 19 3 0 7 0 1 31 chain 6769 chr10 135534747 + 19552120 19552397 L1MA9 1812 - 212 465 179181 20 1 0 10 2 0 30 152 128 17 0 5 21 2 0 22 chain 48693 chr10 135534747 + 19561464 19562075 L1PA8 5853 - 6 612 59964 86 2 1 18 3 2 43 4 0 6 0 4 6 1 0 57 1 2 14 2 0 46 1 0 321 chain 45637 chr10 135534747 + 19567658 19568343 LTR66 600 - 0 600 62362 127 4 6 25 16 0 28 2 1 65 71 0 176 0 1 171 chain 211431 chr10 135534747 + 19573179 19575474 L1PA2 6032 - 0 2296 18403 2213 0 1 82 chain 46111 chr10 135534747 + 19575474 19575970 L1PA2 6032 + 3241 3737 61773 496 chain 84941 chr10 135534747 + 19608996 19610088 L1PA8 5853 - 0 1087 41538 93 1 0 19 2 1 44 1 2 5 1 0 10 2 1 70 2 0 46 1 0 307 5 0 170 1 3 73 0 2 8 1 0 108 0 3 122 chain 15788 chr10 135534747 + 19621813 19622006 L1PA7 6471 - 10 214 138988 94 0 11 99 chain 14421 chr10 135534747 + 19624735 19624902 L1PA7 6471 - 1 168 143147 167 chain 43651 chr10 135534747 + 19669837 19670320 L1PA2 6032 - 0 483 64629 483 chain 31723 chr10 135534747 + 19684119 19684576 MER4A1 472 - 14 472 81295 135 1 0 47 20 41 9 21 0 125 0 2 99 chain 3216 chr10 135534747 + 19686677 19686717 L1MA6 2487 - 802 842 220630 40 chain 37655 chr10 135534747 + 19708891 19709364 LTR10F 562 - 0 562 72613 121 0 2 177 0 87 175 chain 503201 chr10 135534747 + 19729275 19735272 L1PA5 6144 - 2 6073 6659 11 2 0 135 6 7 713 1 5 389 0 9 251 1 0 491 6 21 692 0 1 138 1 0 119 1 0 619 0 13 525 7 8 248 1 0 176 0 3 399 9 0 12 3 0 5 8 11 240 0 10 149 0 6 33 5 6 277 1 12 274 1 15 48 chain 9704 chr10 135534747 + 19738500 19738646 MER65C 458 - 5 158 162072 33 11 17 93 0 1 9 chain 135744 chr10 135534747 + 19752587 19754282 L1PB1 5432 - 398 2100 26889 37 1 0 375 0 1 75 1 0 70 0 5 313 1 0 172 0 1 42 0 1 196 1 0 4 7 6 133 0 4 267 chain 30262 chr10 135534747 + 19793593 19793910 AluYb8 318 - 1 318 84030 317 chain 79553 chr10 135534747 + 19798735 19799693 LTR5_Hs 974 - 0 974 43802 63 1 0 196 0 2 96 0 11 144 1 5 457 chain 85719 chr10 135534747 + 19848506 19849894 L1PA7 6471 + 5397 6466 41262 119 0 2 102 3 1 135 20 22 215 324 0 319 1 4 150 chain 545587 chr10 135534747 + 19870160 19876180 L1PA3long 6157 - 10 6157 2000 667 1 0 90 1 0 4486 0 128 621 1 2 153 chain 18659 chr10 135534747 + 19883233 19883549 L1PB2 3958 + 3524 3838 131053 21 25 24 13 1 2 34 1 0 63 1 0 32 3 5 4 0 1 25 7 5 22 1 0 63 chain 132467 chr10 135534747 + 19891126 19892613 L1PA5 6144 - 0 1490 27533 847 0 3 640 chain 65556 chr10 135534747 + 19934071 19934818 L1PA4 6152 + 5404 6152 50311 83 0 1 664 chain 21222 chr10 135534747 + 19938613 19938939 L1PA14 3548 - 92 411 123132 41 1 0 6 14 16 15 4 2 27 11 7 10 1 0 111 1 0 84 chain 73145 chr10 135534747 + 19949876 19950713 L1PA4 6152 + 5303 6141 46950 687 7 8 143 chain 284074 chr10 135534747 + 19967056 19970778 L1PA10 4194 - 57 3791 14410 21 3 0 460 4 25 292 7 0 203 2 0 397 0 1 63 0 4 22 5 6 19 0 1 111 0 1 145 0 3 141 0 11 326 0 1 157 1 2 373 15 9 76 8 7 104 1 0 28 0 3 69 13 0 265 22 0 8 0 22 8 6 5 264 2 0 29 4 0 4 0 3 4 0 1 40 chain 25140 chr10 135534747 + 19972703 19973067 L1PA8 5853 - 0 349 104065 93 1 0 19 2 1 40 7 0 7 1 7 4 1 0 74 3 1 17 8 0 28 1 0 58 chain 207323 chr10 135534747 + 19981818 19984154 L1PA5 6144 + 3796 6138 18697 1495 0 4 329 0 1 466 0 1 46 chain 25303 chr10 135534747 + 19987772 19988132 L1PA8 5853 + 5495 5849 103210 26 1 0 39 1 0 49 2 0 10 0 1 47 1 2 13 1 0 11 8 7 37 6 5 18 1 0 89 chain 9083 chr10 135534747 + 20001976 20002096 LTR9B 643 + 445 562 165146 21 3 0 96 chain 4049 chr10 135534747 + 20002164 20002211 MER5C 305 - 161 208 206656 47 chain 35258 chr10 135534747 + 20025069 20025565 L1PA7 6471 - 1 493 75850 12 1 0 3 4 0 69 35 35 67 1 2 304 chain 93942 chr10 135534747 + 20025565 20026657 L1PA7 6471 + 4879 5975 38366 70 1 0 255 1 0 4 0 1 416 0 5 345 chain 39245 chr10 135534747 + 20031003 20031474 LTR15 485 - 7 483 70395 21 0 1 14 2 0 5 1 0 158 0 4 124 0 2 45 0 1 101 chain 5814 chr10 135534747 + 20036615 20036681 tRNA-Gln-CAA_ 72 - 6 72 187006 66 chain 7042 chr10 135534747 + 20039239 20039345 L1MB7 1623 - 586 689 177166 5 2 0 38 2 1 59 chain 28845 chr10 135534747 + 20061233 20061543 AluYb8 318 + 0 307 89686 132 3 0 175 chain 29082 chr10 135534747 + 20109278 20109594 AluYb8 318 + 0 313 88631 132 3 0 181 chain 12660 chr10 135534747 + 20128183 20128404 MER30 238 + 1 238 149605 23 10 6 77 8 25 21 6 0 7 3 9 21 0 3 45 chain 179269 chr10 135534747 + 20173292 20175279 L1PA3long 6157 - 8 1998 21054 330 0 1 1652 0 2 5 chain 38472 chr10 135534747 + 20175279 20175707 L1PA3long 6157 + 3719 4148 70470 227 0 1 201 chain 38871 chr10 135534747 + 20183616 20184069 L1PA7 6471 + 5717 6173 70912 92 0 3 361 chain 254008 chr10 135534747 + 20189568 20193271 L1PB1 5432 - 21 3616 16030 7 1 0 12 1 0 22 1 0 24 2 0 11 92 77 22 19 17 52 2 0 8 2 0 3 2 0 12 1 0 6 1 0 24 3 0 5 100 30 448 6 3 172 0 1 63 0 1 12 1 2 190 5 6 61 0 3 379 24 17 256 0 1 60 0 1 166 1 0 21 5 11 186 6 5 185 7 3 24 1 4 94 1 0 112 0 3 66 2 0 28 5 0 43 9 6 37 23 22 43 4 5 83 1 2 7 1 0 368 6 7 56 chain 25222 chr10 135534747 + 20251640 20251939 AluY 311 + 8 303 103625 45 1 0 78 3 0 172 chain 8334 chr10 135534747 + 20252311 20252402 L1PA4 6152 - 377 468 169203 91 chain 31358 chr10 135534747 + 20252402 20252767 L1PA4 6152 + 5777 6143 81888 260 1 2 104 chain 20016 chr10 135534747 + 20321874 20322117 L1PA5 6144 + 5895 6139 127093 19 13 14 211 chain 10834 chr10 135534747 + 20326305 20326426 L1PA5 6144 - 15 136 156845 121 chain 4595 chr10 135534747 + 20329660 20329714 MER72B 755 + 700 755 199700 15 0 1 39 chain 88162 chr10 135534747 + 20338078 20339339 L1PA14 3548 + 2213 3447 40315 11 0 1 117 0 1 192 2 1 38 0 1 112 2 1 107 2 0 124 4 5 14 3 1 14 2 0 47 9 5 112 27 20 84 1 0 31 1 0 79 1 0 10 6 2 28 13 11 11 5 3 21 1 0 30 chain 29720 chr10 135534747 + 20343462 20343793 L1PA4 6152 + 5821 6152 85758 331 chain 4139 chr10 135534747 + 20355918 20355962 MADE1 96 + 0 44 205373 44 chain 61905 chr10 135534747 + 20368061 20368878 L1PA8 5853 + 4972 5853 51942 31 4 0 6 0 2 7 0 1 273 0 61 22 0 1 5 5 15 168 1 0 46 2 0 67 13 11 51 3 2 19 1 0 93 chain 36339 chr10 135534747 + 20369179 20369704 MLT2A2 560 - 0 540 74451 8 0 4 95 50 61 372 chain 28538 chr10 135534747 + 20408132 20408532 LTR7 482 - 0 482 91005 158 1 12 20 0 31 38 1 2 44 0 1 59 25 63 54 chain 293451 chr10 135534747 + 20409790 20413460 HERVH-int 3825 - 0 3825 13799 223 5 7 192 0 4 61 8 218 39 9 11 772 0 1 26 0 1 266 0 4 284 4 31 392 2 0 67 15 0 447 1 0 49 2 1 9 20 0 21 2 1 12 45 0 29 24 0 19 4 21 13 24 12 12 1 0 9 2 1 24 0 1 4 1 0 11 1 0 197 1 0 110 0 11 166 0 1 45 chain 29045 chr10 135534747 + 20413476 20413863 LTR7 482 - 14 482 88782 144 1 12 20 0 31 36 0 1 109 8 46 69 chain 43259 chr10 135534747 + 20428434 20428940 L1PA7 6471 + 5961 6467 65106 506 chain 27563 chr10 135534747 + 20454207 20454521 L1PA2 6032 - 2 315 94457 74 1 0 239 chain 17224 chr10 135534747 + 20463533 20463731 L1PA5 6144 + 5945 6143 134986 198 chain 17458 chr10 135534747 + 20471621 20471887 L1PA8 5853 - 0 260 134360 93 2 1 18 2 1 45 18 16 71 2 0 15 chain 22212 chr10 135534747 + 20473764 20474093 L1PA8 5853 + 5531 5853 119291 33 6 5 40 2 0 69 12 10 52 2 1 18 3 2 92 chain 12345 chr10 135534747 + 20479390 20479523 L1PA5 6144 + 5998 6131 150846 133 chain 14902 chr10 135534747 + 20480579 20480744 L1PA4 6152 + 5985 6151 141621 161 0 1 4 chain 14760 chr10 135534747 + 20483576 20483739 L1PA5 6144 - 10 172 142066 90 1 0 72 chain 88494 chr10 135534747 + 20497673 20498968 MER11C 1089 - 10 1089 40188 86 0 1 217 8 0 253 0 2 22 208 2 18 17 3 154 0 4 87 0 5 225 chain 16300 chr10 135534747 + 20498259 20498466 L1PA4 6152 + 5935 6152 137481 149 7 17 51 chain 7601 chr10 135534747 + 20515237 20515338 MER30 238 + 140 238 173537 58 3 0 40 chain 24706 chr10 135534747 + 20528254 20528614 THE1D 372 - 0 372 106400 172 32 40 15 6 10 135 chain 10060 chr10 135534747 + 20571523 20571651 MER85 139 + 0 138 160275 89 0 10 39 chain 532563 chr10 135534747 + 20580345 20586501 L1PA4 6152 - 6 6152 3902 115 7 7 2771 0 3 1183 1 0 906 1 4 316 17 0 261 1 0 223 1 0 227 0 4 126 chain 12465 chr10 135534747 + 20601139 20601293 THE1D-int 1627 - 1451 1604 150401 138 1 0 15 chain 369770 chr10 135534747 + 20624584 20628918 L1P1 4361 - 33 4356 11103 23 1 0 155 1 0 1053 4 0 909 1 0 957 6 7 18 11 14 5 3 0 278 0 1 325 10 9 118 15 9 32 0 1 409 chain 3548 chr10 135534747 + 20637469 20637507 MLT1D 503 - 44 82 214576 38 chain 395014 chr10 135534747 + 20653408 20658875 L1PB1 5432 - 15 5400 10281 4 1 0 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 8 4 16 13 4 8 3 0 16 1 0 43 1 0 16 2 1 53 2 0 6 11 7 8 1 0 12 1 0 20 0 16 45 34 37 323 4 1 42 58 0 14 0 5 5 3 0 140 23 23 292 0 4 141 0 1 55 0 1 218 22 19 673 0 1 225 1 0 335 20 9 412 21 18 46 2 0 5 6 8 86 0 2 195 0 2 109 0 5 196 15 2 44 2 1 7 0 1 213 0 1 139 7 16 211 0 1 126 16 16 24 1 2 128 1 0 72 4 0 147 2 1 5 0 1 215 chain 38983 chr10 135534747 + 20659774 20660223 LTR7 482 - 0 482 70762 98 0 2 88 0 31 263 chain 29091 chr10 135534747 + 20667259 20667569 AluYa5 310 + 0 309 88588 132 1 0 177 chain 26376 chr10 135534747 + 20670971 20671318 THE1A 353 - 0 346 98507 8 0 1 7 1 0 227 2 1 102 chain 76529 chr10 135534747 + 20708415 20709285 L1PA5 6144 - 1054 1918 45197 67 0 1 91 7 0 705 chain 92364 chr10 135534747 + 20709285 20710331 L1PA5 6144 + 5097 6144 38853 190 3 0 10 0 4 843 chain 479505 chr10 135534747 + 20725669 20731286 L1PA4 6152 - 0 6146 7745 113 0 1 642 0 3 1086 0 546 196 0 1 4 1 0 310 0 1 929 1 2 708 2 1 12 3 2 83 10 7 71 1 0 97 10 4 1002 0 3 233 16 2 87 chain 12189 chr10 135534747 + 20741876 20742233 L1MB8 1703 + 1217 1519 151458 42 2 0 59 171 111 19 1 8 63 chain 531232 chr10 135534747 + 20748610 20754758 L1PA4 6152 - 1 6149 4054 813 0 1 21 0 1 14 15 15 159 0 1 485 0 3 3211 0 5 846 1 0 109 18 12 139 2 1 307 3 0 5 chain 9413 chr10 135534747 + 20763704 20763888 MLT2A1 477 + 292 477 163494 69 40 20 14 1 0 9 2 25 28 1 0 20 chain 14663 chr10 135534747 + 20775344 20775564 MER30 238 + 0 238 142380 24 5 6 63 0 3 7 13 27 108 chain 471402 chr10 135534747 + 20784559 20789971 L1PA4 6152 - 1 6150 7992 720 2 1 1078 0 4 1082 1 2 81 0 1 2335 17 749 96 chain 7743 chr10 135534747 + 20793553 20793649 MER85 139 - 43 139 172639 96 chain 25248 chr10 135534747 + 20804220 20804578 THE1B 368 - 0 368 103486 118 41 52 29 1 0 169 chain 7361 chr10 135534747 + 20808274 20808373 L1PB2 3958 - 120 216 175027 63 1 0 22 2 0 11 chain 527092 chr10 135534747 + 20814643 20820767 L1PA4 6152 - 1 6145 4493 724 0 1 1476 0 1 594 0 27 842 0 1 165 2 0 1286 2 1 213 5 8 6 3 0 93 11 5 128 1 0 573 chain 198023 chr10 135534747 + 20827302 20829449 L1PA2 6032 + 3881 6032 19353 1964 0 6 168 2 0 13 chain 17504 chr10 135534747 + 20831922 20832130 L1PA5 6144 - 16 225 134252 173 0 1 35 chain 503375 chr10 135534747 + 20844333 20850526 L1PA4 6152 + 2 6151 6647 574 1 0 254 20 3 403 3 0 160 303 0 14 0 303 104 0 1 623 0 1 740 0 1 11 1 0 451 1 4 738 17 2 626 6 7 729 14 0 400 chain 400836 chr10 135534747 + 20857465 20861824 L1PA2 6032 + 1671 6030 10061 3508 1 0 76 0 1 774 chain 21135 chr10 135534747 + 20870053 20870488 MSTA 426 + 0 426 123426 93 78 59 54 4 0 8 6 8 14 2 0 39 2 0 21 1 21 49 1 0 4 2 0 18 9 8 30 chain 4120 chr10 135534747 + 20891899 20891993 Tigger4a 237 - 123 221 205654 9 7 0 17 0 1 26 3 21 8 9 0 9 0 1 6 chain 23088 chr10 135534747 + 20932275 20932619 THE1B 368 - 0 368 115205 124 35 46 26 1 0 107 6 21 40 1 0 4 chain 273024 chr10 135534747 + 20941216 20944860 L1PA7 6471 - 4 4302 15017 12 0 6 75 0 1 39 13 20 6 7 0 514 0 1 90 1 0 84 1 4 273 0 1 516 1 0 147 0 1 412 0 1 21 0 1 308 0 3 180 8 6 163 0 2 225 300 937 90 0 1 158 chain 11218 chr10 135534747 + 20957760 20958023 MSTA 426 + 152 426 155353 52 10 0 7 45 53 27 36 49 86 chain 19803 chr10 135534747 + 20962820 20963032 L1PA4 6152 + 5939 6151 127804 212 chain 20970 chr10 135534747 + 20965966 20966305 MER57B1 401 - 65 401 124034 83 1 0 97 1 0 43 50 49 64 chain 65817 chr10 135534747 + 20968257 20969022 L1PA5 6144 + 5363 6129 50183 258 4 5 503 chain 37244 chr10 135534747 + 20993388 20993929 MER41A 554 - 0 554 73179 68 22 27 53 0 2 40 0 1 17 22 22 48 5 6 202 0 4 64 chain 11610 chr10 135534747 + 21001742 21002009 MER4D1 891 - 390 891 153856 47 32 272 35 1 0 17 20 8 10 1 5 55 19 22 30 chain 143952 chr10 135534747 + 21008430 21010087 L1PA5 6144 - 1 1661 25484 148 7 0 189 0 1 463 9 11 36 0 4 691 0 3 114 chain 555750 chr10 135534747 + 21040596 21046621 L1PA2 6032 - 3 6031 746 10 2 0 913 0 1 1128 0 4 3972 chain 13477 chr10 135534747 + 21061973 21062224 L1PB1 5432 - 14 243 146422 14 1 0 34 1 0 21 7 5 13 1 0 4 2 0 14 9 0 13 2 0 4 1 0 14 2 1 45 1 0 15 2 1 31 chain 15014 chr10 135534747 + 21101250 21101433 L1PA5 6144 - 2 182 141280 7 4 0 88 0 1 84 chain 35174 chr10 135534747 + 21118140 21118525 L1PA3long 6157 + 5772 6157 75948 385 chain 17764 chr10 135534747 + 21136724 21136947 MER75B 242 + 20 242 133535 129 1 0 93 chain 16100 chr10 135534747 + 21142328 21142529 L1MA3 4352 + 3820 4021 138059 201 chain 42999 chr10 135534747 + 21161458 21162007 MER41A 554 + 0 554 65412 281 1 0 187 0 5 41 5 6 34 chain 52841 chr10 135534747 + 21204188 21204769 L1PA3long 6157 - 2 583 57111 581 chain 13205 chr10 135534747 + 21218008 21218178 L1PB4 2604 + 2205 2374 147443 6 1 0 163 chain 29303 chr10 135534747 + 21221139 21221518 L1PA8 5853 + 5485 5853 87556 79 1 0 46 2 0 69 1 0 7 4 0 13 1 0 41 2 1 19 1 0 93 chain 538707 chr10 135534747 + 21226382 21232529 L1PA4 6152 + 0 6152 3041 1234 0 1 498 0 4 1445 0 1 8 4 3 667 0 2 77 0 1 322 4 0 1022 0 1 578 1 0 116 25 25 20 0 1 126 chain 19948 chr10 135534747 + 21238100 21238391 L1PA8 5853 + 5568 5853 127310 40 2 0 70 2 1 14 1 0 51 2 1 11 8 7 90 chain 15036 chr10 135534747 + 21260376 21260538 L1PA2 6032 - 2 164 141217 162 chain 22482 chr10 135534747 + 21283474 21283916 Tigger2a 444 - 0 444 118100 20 110 108 27 14 16 42 0 3 122 8 7 99 chain 9604 chr10 135534747 + 21290581 21290697 MER85 139 + 0 126 162580 90 0 10 26 chain 14722 chr10 135534747 + 21297426 21297624 L1P5 443 + 3 214 142190 4 1 0 174 3 17 16 chain 102093 chr10 135534747 + 21327136 21328456 L1PA8 5853 - 0 1304 36241 93 1 0 19 2 1 24 31 30 6 1 0 72 2 0 44 1 0 519 1 0 34 14 0 344 1 2 14 0 1 61 1 5 35 chain 34251 chr10 135534747 + 21330586 21331033 MER41B 635 - 91 542 77279 27 0 2 47 1 0 145 5 6 176 0 1 13 0 1 33 chain 3243 chr10 135534747 + 21341877 21341936 L1MA4 2864 + 2746 2804 220138 18 10 9 31 chain 8036 chr10 135534747 + 21364854 21365090 L1MB3 1562 + 828 1062 170832 59 42 44 10 5 4 27 20 19 18 25 23 30 chain 12068 chr10 135534747 + 21379289 21379444 MER2 342 + 112 273 151904 29 0 5 54 0 1 72 chain 4172 chr10 135534747 + 21393234 21393281 L1ME1 1623 - 1321 1368 204948 47 chain 313358 chr10 135534747 + 21394126 21397832 L1PA6 6164 - 11 3748 12878 68 4 0 45 0 1 699 0 1 31 1 0 183 0 1 99 0 1 658 0 4 288 0 15 758 0 1 31 0 1 24 0 4 48 0 2 686 0 5 83 chain 64501 chr10 135534747 + 21398253 21399066 L1P3 4156 - 17 823 50801 24 2 1 7 2 0 474 20 16 284 chain 156070 chr10 135534747 + 21399831 21401678 L1PA6 6164 + 4312 6162 23850 460 0 3 249 0 1 100 0 1 182 1 0 31 0 1 493 1 2 204 0 1 44 4 0 78 chain 15876 chr10 135534747 + 21429665 21429886 L1PA8 5853 + 5636 5853 138719 41 3 2 13 1 0 48 3 2 17 2 1 93 chain 23014 chr10 135534747 + 21454905 21455177 AluY 311 + 38 311 115558 94 0 1 178 chain 4239 chr10 135534747 + 21471603 21471736 MER33 330 - 6 134 204020 20 15 10 32 44 44 22 chain 16140 chr10 135534747 + 21475478 21475708 MER30 238 + 0 238 137935 100 12 23 76 3 0 39 chain 6469 chr10 135534747 + 21498215 21498296 MER53 195 - 1 83 181485 63 0 1 18 chain 15584 chr10 135534747 + 21523148 21523496 MSTB 430 + 23 395 139630 107 138 162 103 chain 4233 chr10 135534747 + 21545416 21545471 MER63B 433 + 92 148 204132 15 0 1 40 chain 18602 chr10 135534747 + 21563663 21563978 Tigger2a 444 - 183 437 131223 35 1 0 7 1 0 5 0 2 10 62 1 194 chain 3712 chr10 135534747 + 21570791 21570834 L1MC1 2226 - 190 233 211752 43 chain 41482 chr10 135534747 + 21571590 21572463 MER41A 554 + 0 544 67304 19 3 1 141 1 0 4 326 4 107 4 0 268 chain 31133 chr10 135534747 + 21574156 21574591 MER4A1 472 + 0 453 82282 29 0 1 158 12 19 12 7 15 166 2 4 49 chain 21119 chr10 135534747 + 21577783 21578038 AluSg7 307 - 15 270 123490 160 0 1 8 1 0 86 chain 8471 chr10 135534747 + 21605614 21605743 L1PB4 2604 - 78 215 168451 24 7 11 69 3 7 26 chain 8497 chr10 135534747 + 21610670 21610772 AluJb 308 + 200 302 168306 102 chain 9916 chr10 135534747 + 21610889 21610996 U6 107 + 0 107 160987 107 chain 109453 chr10 135534747 + 21610998 21612180 L1PA2 6032 + 4843 6025 34328 1182 chain 3022 chr10 135534747 + 21620192 21620227 MADE1 96 + 49 84 224584 35 chain 73034 chr10 135534747 + 21640070 21641084 MER11A 1151 + 0 1144 47008 64 1 100 12 8 0 54 5 6 58 4 0 149 0 1 94 0 1 35 20 19 91 0 2 4 1 0 120 0 26 14 1 24 10 18 0 32 0 9 42 1 0 16 0 1 160 chain 23705 chr10 135534747 + 21663015 21663305 HERVL-int 5654 + 3184 3471 112009 204 5 1 56 0 1 25 chain 25537 chr10 135534747 + 21664953 21665252 AluSp 311 - 13 311 102068 280 1 0 18 chain 2924 chr10 135534747 + 21670287 21670356 Kanga1 540 - 302 372 226625 31 23 24 15 chain 7221 chr10 135534747 + 21674739 21674841 MER39 703 + 2 104 175934 20 1 0 44 0 2 31 1 0 5 chain 15450 chr10 135534747 + 21675781 21675986 MER4B 649 + 1 204 140053 23 13 11 169 chain 7298 chr10 135534747 + 21681172 21681263 MER49 923 + 160 250 175457 65 1 0 25 chain 3894 chr10 135534747 + 21696404 21696448 LTR1C 686 - 16 60 208946 44 chain 5462 chr10 135534747 + 21697986 21698174 MER87 546 + 21 204 190391 22 85 78 28 8 11 11 1 0 33 chain 16227 chr10 135534747 + 21700816 21701194 THE1B 368 - 0 368 137679 18 3 0 5 0 3 23 14 13 57 91 80 46 16 17 17 7 8 81 chain 79579 chr10 135534747 + 21719190 21720149 SVA_F 1814 + 962 1814 43793 208 105 0 11 1 0 623 1 0 10 chain 6148 chr10 135534747 + 21719398 21719499 SVA_F 1814 + 880 994 95568 18 1 0 39 1 0 10 0 15 32 chain 5455 chr10 135534747 + 21721465 21721526 MER39 703 - 272 333 190472 61 chain 6851 chr10 135534747 + 21740487 21740565 MER41A 554 - 431 509 178579 78 chain 25543 chr10 135534747 + 21765516 21765808 AluYf4 310 + 13 303 102035 51 2 0 239 chain 6313 chr10 135534747 + 21770670 21770743 HY3 101 + 26 99 182686 73 chain 24027 chr10 135534747 + 21868491 21868781 AluSp 311 - 12 301 110175 179 1 0 110 chain 21543 chr10 135534747 + 21874712 21874990 AluSp 311 - 34 311 121991 242 8 7 28 chain 24837 chr10 135534747 + 21881372 21881692 AluYf5 307 - 2 307 105687 10 5 0 28 3 1 200 13 5 61 chain 4839 chr10 135534747 + 21893953 21894031 FAM 185 + 98 174 196888 53 8 6 17 chain 3241 chr10 135534747 + 21922868 21922907 L1MC4 1079 - 197 238 220208 15 0 2 24 chain 19986 chr10 135534747 + 21937671 21937973 THE1B 368 - 62 368 127188 64 1 0 8 6 0 7 5 14 12 8 11 21 1 0 169 chain 9468 chr10 135534747 + 21968415 21968539 MER85 139 - 0 135 163230 30 0 10 67 0 1 27 chain 28564 chr10 135534747 + 21996118 21996419 AluYg6 310 - 9 310 90902 301 chain 28021 chr10 135534747 + 22040302 22040694 LTR7 482 - 1 482 92925 48 12 14 26 13 17 67 1 2 15 0 31 96 1 52 113 chain 533247 chr10 135534747 + 22067545 22073990 L1PA5 6144 + 0 6144 3815 2312 3 0 67 0 4 282 0 6 153 309 0 228 12 17 101 1 0 90 0 4 320 11 1 323 0 1 1269 4 6 352 0 1 458 1 0 149 chain 3917 chr10 135534747 + 22084834 22084897 L1MB1 2102 - 117 177 208584 26 2 1 18 2 0 15 chain 80284 chr10 135534747 + 22106589 22107657 MER11B 1079 + 0 1079 43478 225 0 5 29 3 0 271 10 14 128 1 0 59 9 10 31 6 0 201 3 12 64 5 6 19 0 1 4 chain 541040 chr10 135534747 + 22123269 22131188 L1PA4 6152 + 6 6152 2662 454 6 0 116 1 0 660 0 1 793 1 0 499 1772 0 2100 1 0 69 0 1 402 1 0 40 0 1 49 0 2 119 1 0 372 0 6 456 1 0 6 chain 146450 chr10 135534747 + 22125817 22127571 SVA_C 1631 + 0 1630 25096 17 0 11 824 44 0 155 87 0 607 4 0 16 chain 2184 chr10 135534747 + 22126677 22126702 SVA_C 1631 + 872 898 143474 6 0 1 19 chain 4123 chr10 135534747 + 22126857 22126901 SVA_C 1631 + 961 1005 143438 44 chain 3396 chr10 135534747 + 22126901 22126941 SVA_C 1631 + 959 1003 150330 23 3 7 14 chain 6715 chr10 135534747 + 22149951 22150035 MLT1C 463 - 339 429 179571 10 0 6 74 chain 34038 chr10 135534747 + 22150386 22150818 MER41A 554 + 0 430 77567 123 9 5 279 4 6 17 chain 37076 chr10 135534747 + 22161769 22162233 LTR2 463 + 0 463 73419 378 7 8 24 1 0 29 1 0 24 chain 25592 chr10 135534747 + 22205151 22205444 AluY 311 + 11 309 101767 31 0 4 86 0 1 176 chain 20799 chr10 135534747 + 22222071 22222310 7SK 245 + 0 239 124601 239 chain 35793 chr10 135534747 + 22254353 22254869 MER41C 542 + 0 542 75142 49 0 1 185 5 6 70 13 35 25 14 17 134 1 0 20 chain 4788 chr10 135534747 + 22320741 22320797 MSTA-int 1630 - 1574 1630 197487 56 chain 4308 chr10 135534747 + 22321172 22321219 MSTA 426 - 35 82 203115 47 chain 26794 chr10 135534747 + 22321219 22321571 THE1B 368 + 0 368 97001 44 6 21 104 1 0 29 0 2 168 chain 3575 chr10 135534747 + 22324975 22325016 HERVL-int 5654 + 4558 4599 214070 41 chain 538312 chr10 135534747 + 22349653 22355788 L1PA5 6144 + 4 6141 3101 3869 0 1 2084 6 7 176 chain 507462 chr10 135534747 + 22363276 22369685 L1PA7 6471 - 10 6471 6369 409 0 7 121 2 1 119 0 1 186 0 3 1128 1 2 251 0 1 222 3 6 166 3 2 254 0 2 480 19 23 184 0 4 181 0 4 56 12 7 257 2 1 46 1 0 92 0 4 686 1 0 284 0 19 13 0 4 125 0 10 176 7 8 14 4 0 6 3 7 142 0 5 171 3 0 98 1 0 38 0 1 22 10 0 43 1 2 104 6 21 15 14 0 227 chain 515379 chr10 135534747 + 22378209 22384386 L1PA6 6164 + 0 6159 5630 180 4 5 41 6 1 179 0 4 276 1 2 220 0 4 407 1 0 137 1 0 88 0 1 264 5 4 123 0 4 26 6 7 429 3 6 655 35 1 125 0 1 110 1 0 223 1 0 406 0 1 1382 0 4 535 0 1 158 2 1 103 0 1 44 chain 152688 chr10 135534747 + 22402271 22404352 L1PB1 5432 - 2 1993 24270 8 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 31 11 0 15 1 0 45 1 0 15 2 1 52 2 0 9 7 3 10 1 0 6 1 0 2 1 0 22 74 0 11 2 8 78 7 9 291 0 1 92 3 0 655 3 11 236 1 3 152 0 1 129 chain 59943 chr10 135534747 + 22404352 22405099 L1PB1 5432 + 2680 3426 52626 103 4 5 32 8 7 17 1 0 582 chain 369207 chr10 135534747 + 22408380 22412818 L1PA7 6471 - 3 4632 11117 144 0 1 116 4 0 390 0 2 198 0 3 134 0 3 265 0 2 262 0 1 11 0 12 382 0 1 38 0 1 4 5 4 125 0 1 871 2 0 129 0 1 98 0 161 17 0 5 40 0 1 182 0 1 110 0 1 17 0 1 100 0 1 628 5 4 161 chain 554214 chr10 135534747 + 22412838 22418868 L1PA2 6032 - 2 6032 924 3273 1 0 1789 0 3 101 5 4 543 1 2 83 3 1 231 chain 38371 chr10 135534747 + 22427792 22428279 LTR12F 595 + 7 595 71614 68 0 110 25 14 5 380 chain 393419 chr10 135534747 + 22428312 22433106 HERV9-int 5642 + 13 4811 10341 151 0 4 5 0 1 192 2 0 83 0 1 144 8 10 16 12 0 43 0 1 52 6 0 117 15 13 198 7 4 59 23 21 714 0 4 98 0 1 192 0 2 207 12 5 655 0 4 14 0 1 1000 0 1 225 0 16 544 chain 3258 chr10 135534747 + 22434897 22435067 LTR12F 595 + 145 248 219806 32 42 41 16 67 1 13 chain 15234 chr10 135534747 + 22444559 22444849 Tigger3a 397 - 0 342 140680 42 52 53 119 0 4 18 2 0 22 15 64 20 chain 17811 chr10 135534747 + 22468743 22469154 MSTB1 431 + 0 431 133371 21 0 1 5 1 2 25 29 29 47 13 20 20 2 0 36 3 9 14 51 52 33 23 29 88 chain 26229 chr10 135534747 + 22486670 22486979 AluYk4 311 + 0 306 99093 118 3 0 188 chain 7139 chr10 135534747 + 22518437 22518511 tRNA-Asn-AAC 74 - 0 74 176485 74 chain 7866 chr10 135534747 + 22566948 22567061 MER51B 395 - 0 126 171897 86 7 20 20 chain 111777 chr10 135534747 + 22646515 22647743 L1PA3long 6157 - 0 1232 33730 849 0 4 379 chain 541813 chr10 135534747 + 22692066 22698075 L1PA3long 6157 - 1 6153 2542 1712 4 0 80 0 4 1788 1 2 1481 0 3 94 5 4 82 1 129 617 0 12 144 chain 498988 chr10 135534747 + 22797018 22803431 L1PA7 6471 - 1 6466 6895 4 1 0 58 0 32 754 2 1 115 0 3 142 0 1 614 70 2 1170 0 3 18 0 4 52 38 37 143 0 1 65 143 31 587 0 1 361 1 0 106 0 5 130 0 1 179 1 2 89 1 0 274 0 1 212 8 14 97 4 3 255 14 14 154 0 10 208 18 188 131 1 0 193 chain 427275 chr10 135534747 + 22809663 22815145 L1PA8 5853 - 202 5699 9363 43 2 0 44 1 0 94 0 4 371 2 1 83 0 2 367 6 11 84 0 6 8 20 40 128 0 1 36 9 5 265 0 4 346 5 4 63 55 0 644 5 6 53 0 4 45 2 1 42 0 5 563 0 4 139 1 4 67 0 7 28 27 12 221 0 1 162 5 0 184 7 11 20 1 2 326 21 25 405 3 7 14 0 6 12 0 4 38 0 1 269 1 8 74 0 2 71 chain 20560 chr10 135534747 + 22818024 22818367 L1P3 4156 - 1334 1651 125432 6 0 6 17 10 11 31 4 8 80 30 1 17 15 7 133 chain 13454 chr10 135534747 + 22844728 22844943 MER30 238 - 3 237 146513 68 6 0 7 4 10 12 1 0 16 7 18 85 0 9 9 chain 77185 chr10 135534747 + 22854216 22855267 MER11C 1089 + 0 1073 44869 246 0 9 62 0 4 21 1 0 43 1 0 147 47 46 112 1 5 4 1 0 38 0 1 49 0 8 68 0 1 56 1 0 14 1 0 128 0 1 10 chain 37144 chr10 135534747 + 22980854 22981343 MER1A 529 - 1 492 73315 67 6 5 62 0 3 35 0 2 5 3 1 311 chain 411695 chr10 135534747 + 23033362 23037981 L1PA4 6152 + 1534 6152 9753 401 9 0 385 2 0 501 0 1 2038 0 4 1277 0 5 6 chain 10841 chr10 135534747 + 23062059 23062326 L1PA17 2846 - 153 409 156828 44 1 0 17 1 0 27 112 103 65 chain 45099 chr10 135534747 + 23098559 23099136 L1PB1 5432 - 423 994 62937 211 3 1 165 4 0 194 chain 278496 chr10 135534747 + 23114993 23119007 MER61-int 3695 - 7 3695 14724 121 12 0 157 1 9 144 0 7 40 2 0 52 15 16 280 2 1 96 1 0 99 0 1 49 9 7 62 0 3 157 0 1 254 0 3 154 1 0 347 0 5 139 0 2 6 13 17 332 1 4 381 1 0 100 2 0 40 23 24 36 6 5 125 1 2 138 2 1 150 2 1 62 336 0 12 1 0 16 4 0 30 chain 24780 chr10 135534747 + 23136128 23136466 MER51B 395 - 14 395 105999 136 1 0 92 0 56 58 21 9 30 chain 358683 chr10 135534747 + 23146385 23150358 L1PA4 6152 + 2177 6151 11385 3216 4 5 753 chain 42909 chr10 135534747 + 23158231 23158775 MLT2A2 560 + 0 560 65529 399 3 14 76 0 1 60 0 4 6 chain 18105 chr10 135534747 + 23160287 23160851 LTR26E 604 + 22 553 132586 36 123 64 21 49 93 71 15 0 62 6 10 25 79 73 23 2 1 52 chain 41432 chr10 135534747 + 23160872 23161455 MER4E1 777 + 1 777 67379 16 1 2 6 1 0 120 1 184 134 0 27 48 10 6 48 0 1 4 20 6 174 chain 3189 chr10 135534747 + 23164008 23164043 MER39 703 - 47 82 221127 35 chain 36526 chr10 135534747 + 23166114 23166578 LTR2 463 - 0 463 74204 24 1 0 28 1 0 29 1 2 380 chain 409534 chr10 135534747 + 23169593 23174561 L1PA6 6164 + 4 6147 9815 201 0 2 360 1 0 879 0 1 596 18 1 218 0 1237 199 7 0 254 0 1 1103 0 1 5 1 0 266 11 1 208 32 0 471 0 1 138 chain 460641 chr10 135534747 + 23174586 23180023 L1PA4 6152 + 6 6143 8375 1150 0 3 53 3 4 16 4 5 496 0 4 110 0 5 114 1 0 246 11 4 136 1 3 587 0 3 238 1 0 548 0 1 12 0 682 651 1 2 222 5 9 681 6 0 6 1 11 73 2 0 62 chain 49370 chr10 135534747 + 23186774 23187648 L1PB1 5432 + 4630 5422 59468 167 9 10 187 22 16 93 56 10 25 1 0 8 1 0 10 22 16 48 2 1 15 1 0 43 6 5 18 18 6 18 3 1 5 1 0 14 2 0 21 4 3 22 1 0 12 1 0 18 chain 21339 chr10 135534747 + 23196669 23197039 THE1B 368 - 0 368 122722 128 1 0 10 55 53 42 27 28 107 chain 20850 chr10 135534747 + 23199900 23200303 MSTA 426 - 0 408 124459 16 7 36 9 28 0 47 14 22 60 2 0 30 20 16 34 9 13 10 3 0 29 3 4 82 chain 69952 chr10 135534747 + 23209772 23210576 L1PA6 6164 - 2 808 48408 15 0 1 136 1 0 272 0 2 380 chain 14805 chr10 135534747 + 23213599 23213778 L1PA5 6144 + 5954 6144 141919 151 0 11 28 chain 20720 chr10 135534747 + 23222570 23222823 AluY 311 + 38 292 124890 94 0 1 159 chain 23621 chr10 135534747 + 23255529 23255908 THE1D 372 - 0 372 112468 133 37 51 83 0 1 56 25 0 12 0 3 33 chain 22349 chr10 135534747 + 23264210 23264507 AluSq2 311 + 9 297 118706 99 8 0 26 1 0 163 chain 54402 chr10 135534747 + 23309931 23310745 L1PA16 3655 - 93 893 56096 193 47 46 33 2 0 89 1 0 11 0 2 105 10 3 39 1 0 132 7 6 45 3 0 32 1 0 5 0 1 58 chain 46933 chr10 135534747 + 23343534 23344088 MER41A 554 - 0 554 61279 554 chain 10560 chr10 135534747 + 23345630 23345859 LTR45 522 - 11 252 157994 14 7 5 5 0 2 10 1 0 10 4 5 4 1 0 16 20 34 16 16 15 105 chain 41470 chr10 135534747 + 23345859 23346405 MLT2A2 560 - 0 560 67325 146 1 12 97 1 2 123 1 0 91 0 3 86 chain 28803 chr10 135534747 + 23360735 23361043 AluYb9 318 - 13 318 89885 179 3 0 126 chain 33549 chr10 135534747 + 23389946 23390548 L1PB1 5432 - 2 566 78316 4 1 0 4 1 0 7 1 0 13 0 2 8 1 0 7 4 0 15 1 0 24 2 0 11 12 9 18 26 12 15 1 0 45 6 5 10 2 1 52 2 0 6 8 4 14 3 2 4 1 0 25 3 0 11 5 4 82 0 2 80 0 1 67 chain 22182 chr10 135534747 + 23411995 23412298 AluSg4 309 - 1 300 119436 29 7 5 58 10 8 199 chain 178220 chr10 135534747 + 23441603 23443541 L1PA3long 6157 + 4218 6157 21144 958 0 1 980 chain 45627 chr10 135534747 + 23469581 23470086 L1PA5 6144 + 5627 6132 62378 505 chain 473796 chr10 135534747 + 23513060 23518524 L1PA5 6144 + 732 6142 7922 683 0 5 26 0 4 1086 69 0 1146 0 3 923 2 1 352 0 1 237 0 1 97 0 4 66 4 5 434 1 2 327 4 0 7 chain 26000 chr10 135534747 + 23541764 23542119 THE1B 368 + 0 368 100017 15 2 0 25 0 5 127 2 1 128 7 18 49 chain 3084 chr10 135534747 + 23563854 23563888 MER11B 1079 - 899 933 223258 34 chain 4600 chr10 135534747 + 23574715 23574807 MER3 215 - 40 141 199627 14 9 0 8 9 27 52 chain 139294 chr10 135534747 + 23575891 23577510 L1PA8A 6298 + 4666 6291 26250 560 0 1 134 0 3 41 0 2 77 1 0 84 1 3 152 0 1 49 1 0 411 1 0 107 chain 28125 chr10 135534747 + 23585120 23585456 LTR17 781 - 455 781 92553 23 10 0 303 chain 315417 chr10 135534747 + 23585769 23590069 HERV17-int 4347 - 0 3631 12788 305 2 0 84 25 0 178 0 3 524 325 0 312 2 3 311 10 0 362 0 3 174 2 1 239 311 0 378 0 2 151 4 0 601 chain 42597 chr10 135534747 + 23590455 23591090 LTR17 781 - 0 526 65903 49 23 1 16 78 0 388 0 1 26 10 0 45 chain 22638 chr10 135534747 + 23608225 23608646 L1PA15 4387 - 21 417 117387 10 1 0 21 9 4 18 2 0 31 2 1 11 28 25 28 1 0 8 5 1 23 1 0 55 1 0 26 5 4 55 4 0 34 2 1 40 chain 23479 chr10 135534747 + 23619401 23619682 AluY 311 + 14 296 113221 111 1 2 169 chain 12810 chr10 135534747 + 23662338 23662551 LTR26B 539 + 0 202 149017 18 0 1 68 17 23 29 0 1 23 21 2 37 chain 46969 chr10 135534747 + 23676321 23676872 L1PA5 6144 - 6 558 61232 484 0 1 67 chain 10218 chr10 135534747 + 23679021 23679157 MER50 708 - 22 152 159519 70 6 0 60 chain 5879 chr10 135534747 + 23694965 23695200 MER90a 614 + 363 606 186387 36 77 80 22 62 67 38 chain 5073 chr10 135534747 + 23704469 23704573 L1MB8 1703 - 787 893 194384 31 29 31 44 chain 27799 chr10 135534747 + 23746250 23746666 LTR7B 505 - 15 505 93699 36 14 13 54 0 1 24 1 0 9 30 31 42 0 2 22 0 23 6 1 2 12 0 38 60 0 10 105 chain 14094 chr10 135534747 + 23762028 23762215 MER4A1 472 - 284 472 144242 80 4 5 103 chain 14536 chr10 135534747 + 23762722 23763046 THE1B 368 - 40 368 142782 85 134 138 105 chain 25794 chr10 135534747 + 23778040 23778364 THE1A 353 + 0 323 100898 109 2 1 213 chain 16455 chr10 135534747 + 23793210 23793387 AluY 311 + 127 304 137048 177 chain 462123 chr10 135534747 + 23795841 23800995 L1PA3long 6157 - 410 6141 8323 1193 0 572 293 1 0 169 0 2 828 1 0 363 1 2 294 0 1 99 0 1 205 0 3 796 1 0 910 chain 59885 chr10 135534747 + 23801955 23802702 LTR17 781 - 0 781 52884 44 0 22 219 6 19 150 1 0 327 chain 4914 chr10 135534747 + 23815925 23815998 L1MC1 2226 - 520 594 196122 42 6 7 25 chain 120988 chr10 135534747 + 23833262 23834791 THE1A-int 1579 + 0 1556 30697 64 0 8 72 11 34 183 20 18 449 4 5 26 5 3 618 1 0 76 chain 24918 chr10 135534747 + 23834814 23835159 THE1A 353 + 0 353 105230 79 5 6 25 2 10 54 0 1 7 1 0 5 0 1 14 1 0 120 1 0 31 chain 41581 chr10 135534747 + 23841035 23841563 MLT2A2 560 + 0 560 67184 192 14 17 184 0 29 138 chain 3152 chr10 135534747 + 23847046 23847127 MIRb 242 + 26 105 221893 15 31 29 35 chain 112985 chr10 135534747 + 23875821 23878640 L1PA6 6164 - 3 2853 7122 7 3 0 321 2 1 1090 0 8 104 2 1 260 0 4 248 0 7 120 3 14 23 0 1 115 9 8 4 0 1 317 0 4 15 0 1 176 chain 538857 chr10 135534747 + 23878709 23884862 L1PA4 6152 - 0 6151 3013 144 0 6 3 5 0 1364 1 0 953 3 1 2247 0 1 189 0 1 28 1 2 10 0 1 47 7 0 751 0 2 130 0 1 270 chain 132624 chr10 135534747 + 23884862 23888171 L1PA6 6164 - 2853 6160 7122 120 6 5 337 0 2 245 4 1 200 0 3 67 1 2 775 0 1 106 0 1 10 10 4 203 1 2 762 6 5 456 chain 24593 chr10 135534747 + 23889865 23890166 AluSp 311 - 10 311 107027 301 chain 15709 chr10 135534747 + 23902728 23902922 L1PA7 6471 - 2 194 139236 10 3 0 7 0 1 174 chain 531929 chr10 135534747 + 23955362 23961491 L1PA4 6152 - 15 6152 3966 1056 0 1 1472 0 2 453 0 1 345 0 1 493 0 3 9 0 1 4 1 0 379 0 1 482 0 1 81 18 0 810 0 2 384 0 14 142 chain 13612 chr10 135534747 + 23968747 23969018 L1PA16 3655 - 36 284 145930 16 5 0 7 57 35 63 13 17 110 chain 117229 chr10 135534747 + 23969200 23970500 L1PA3long 6157 + 4841 6157 32045 198 0 1 270 0 4 116 0 11 716 chain 23146 chr10 135534747 + 23976392 23976687 AluY 311 + 9 299 114909 123 0 1 144 11 5 17 chain 83981 chr10 135534747 + 24016587 24017612 L1PA7 6471 - 12 1022 41909 17 1 0 121 1 0 338 19 2 352 1 5 175 chain 5472 chr10 135534747 + 24017613 24017672 L1PA7 6471 + 5379 5438 190284 59 chain 45314 chr10 135534747 + 24050194 24050745 L1PA8A 6298 - 2968 3522 62699 9 0 2 236 3 6 97 2 0 204 chain 227453 chr10 135534747 + 24050765 24053826 L1PA8A 6298 + 3402 6283 17452 45 0 7 239 24 9 177 0 1 4 5 3 25 21 26 168 1 0 248 0 1 177 0 3 55 0 1 32 1 2 447 0 1 9 0 13 190 208 0 204 0 2 58 8 9 233 0 9 76 4 5 402 chain 33225 chr10 135534747 + 24062703 24063079 L1P1 4361 - 33 407 78837 23 1 0 154 1 0 197 chain 11844 chr10 135534747 + 24072025 24072201 MER30 238 - 8 199 152853 38 3 0 54 2 0 7 4 24 68 chain 62982 chr10 135534747 + 24089637 24090404 L1PA7 6471 + 5693 6459 51453 616 13 12 138 chain 2784 chr10 135534747 + 24120069 24120100 L1M3 994 + 705 736 228935 31 chain 23037 chr10 135534747 + 24121674 24122000 THE1B 368 - 0 368 115465 126 2 0 5 5 35 4 1 0 30 1 0 47 0 1 53 8 23 44 chain 295244 chr10 135534747 + 24133668 24137374 L1PA7 6471 - 3 3767 13686 7 4 0 129 0 1 61 0 2 55 1 0 212 0 1 371 0 3 135 1 0 4 5 3 10 0 5 738 1 2 63 11 8 802 24 33 188 0 10 507 0 1 13 0 4 230 2 0 49 54 88 29 chain 8099 chr10 135534747 + 24138508 24138613 L1PA5 6144 + 6039 6144 170489 105 chain 551020 chr10 135534747 + 24139944 24146083 L1PA3long 6157 - 0 6150 1304 338 0 1 634 2 1 535 0 1 6 1 0 347 0 2 1114 1 2 1592 0 3 300 0 1 665 0 4 604 chain 111304 chr10 135534747 + 24155780 24157018 L1PA3long 6157 - 0 1238 33858 253 1 0 604 1 0 189 0 1 100 0 1 90 chain 4376 chr10 135534747 + 24157019 24157067 5S 121 + 0 48 202236 48 chain 46829 chr10 135534747 + 24164477 24165035 L1PA6 6164 + 5605 6162 61353 184 1 0 373 chain 10084 chr10 135534747 + 24169086 24169243 L1MA2 4263 + 3965 4114 160159 81 0 2 8 18 9 40 1 0 9 chain 65191 chr10 135534747 + 24181872 24182592 L1PA3long 6157 - 2453 3173 50480 720 chain 225112 chr10 135534747 + 24182598 24185081 L1PA3long 6157 + 3674 6157 17587 1703 2 1 171 0 1 607 chain 35715 chr10 135534747 + 24197618 24198270 L1PB1 5432 + 4755 5420 75251 37 0 1 72 0 16 46 5 0 68 13 44 60 15 17 22 1 0 8 1 0 12 18 12 38 17 16 12 1 0 44 1 0 10 20 7 30 2 0 5 1 0 14 2 0 22 2 0 5 0 1 17 1 0 13 1 0 16 chain 40508 chr10 135534747 + 24198502 24198977 L1PA7 6471 - 279 752 68582 297 2 0 176 chain 19701 chr10 135534747 + 24198977 24199239 L1PA7 6471 + 6209 6470 128095 104 1 0 7 2 4 89 2 1 52 1 0 4 chain 14625 chr10 135534747 + 24211889 24212160 L1PB1 5432 - 6 253 142505 8 1 0 14 1 0 11 1 0 20 1 0 27 2 0 14 1 0 5 3 1 15 16 7 8 3 0 16 1 0 43 1 0 16 2 1 41 chain 9934 chr10 135534747 + 24218980 24219189 L1PA17 2846 - 153 348 160912 14 3 2 28 1 0 18 1 0 31 1 0 9 23 20 34 3 2 21 6 0 16 chain 76563 chr10 135534747 + 24222443 24223420 L1PA8A 6298 + 5300 6291 45178 47 0 1 4 0 1 136 5 9 369 13 14 228 0 6 30 1 2 144 chain 30114 chr10 135534747 + 24235764 24236143 THE1C 375 + 0 375 84434 125 3 0 225 1 0 25 chain 90688 chr10 135534747 + 24252060 24253478 L1PA7 6471 - 15 1127 39392 748 331 0 214 0 25 125 chain 8025 chr10 135534747 + 24256889 24256982 L1PA8 5853 - 0 93 170902 93 chain 7163 chr10 135534747 + 24259628 24259725 MER4D1 891 + 9 106 176319 74 0 1 4 1 0 18 chain 42711 chr10 135534747 + 24261107 24261975 L1PA8A 6298 + 5746 6270 65761 118 345 0 318 3 4 84 chain 37720 chr10 135534747 + 24273373 24273853 L1PA8 5853 + 5375 5850 72527 189 1 0 37 0 1 6 2 0 70 2 1 61 2 1 19 1 0 90 chain 27438 chr10 135534747 + 24289123 24289497 THE1C 375 + 1 375 94854 68 13 14 25 1 0 267 chain 10799 chr10 135534747 + 24307364 24307481 L1PA4 6152 + 6018 6135 156993 117 chain 111441 chr10 135534747 + 24338337 24339656 L1PA7 6471 - 3 1423 33827 10 3 0 115 7 107 532 4 6 400 0 1 160 0 1 88 chain 46956 chr10 135534747 + 24340210 24340963 L1PB2 3958 - 120 809 61251 63 1 0 21 3 1 74 4 3 17 55 1 15 0 3 23 1 0 77 1 0 67 0 4 18 5 2 9 3 1 65 6 1 10 1 0 56 2 0 140 5 7 11 chain 15879 chr10 135534747 + 24343583 24343797 Tigger3a 397 - 34 258 138711 188 6 16 20 chain 4442 chr10 135534747 + 24346460 24346513 L1MB1 2102 - 104 157 201423 53 chain 548898 chr10 135534747 + 24351068 24357220 L1PA4 6152 - 0 6152 1591 780 1 0 70 0 1 672 1 0 686 0 1 765 1 0 412 0 1 2764 chain 13352 chr10 135534747 + 24370542 24370731 MER30 238 - 0 212 146875 42 3 0 54 6 32 84 chain 126528 chr10 135534747 + 24377239 24378660 L1PA5 6144 - 13 1435 28936 431 0 1 990 chain 25229 chr10 135534747 + 24378660 24378951 L1PA5 6144 + 4421 4712 103140 291 chain 61895 chr10 135534747 + 24382581 24383253 L1PA3long 6157 - 0 672 51948 672 chain 87395 chr10 135534747 + 24383253 24384310 L1P1 4361 - 3312 4360 40609 348 7 0 127 1 0 412 7 6 155 chain 30964 chr10 135534747 + 24388120 24388498 L1PA6 6164 - 2 382 82573 9 0 2 369 chain 23661 chr10 135534747 + 24388528 24388790 L1PA5 6144 - 8 269 112244 251 1 0 10 chain 5330 chr10 135534747 + 24392907 24392963 THE1C 375 + 8 64 191727 56 chain 29748 chr10 135534747 + 24396115 24396621 L1PA15 4387 - 31 517 85663 24 10 5 12 3 1 24 4 5 14 22 19 35 2 1 9 4 0 22 1 0 55 2 1 25 3 2 170 1 0 42 4 2 18 chain 8624 chr10 135534747 + 24403182 24403277 L1PA3long 6157 + 6060 6155 167619 95 chain 3279 chr10 135534747 + 24412598 24412668 MER5B 177 + 70 145 219384 27 17 23 8 1 0 17 chain 5123 chr10 135534747 + 24430732 24430792 MLT1A1 405 + 284 344 193852 60 chain 5447 chr10 135534747 + 24430865 24430935 MLT1A0 366 + 296 366 190557 70 chain 39307 chr10 135534747 + 24434437 24434982 MLT2A2 560 - 1 559 70312 135 7 18 89 7 6 95 20 21 45 0 1 36 1 0 37 0 2 73 chain 28346 chr10 135534747 + 24442887 24443185 AluYa5 310 - 12 310 91778 298 chain 10662 chr10 135534747 + 24464095 24464360 L1PB1 5432 - 106 318 157554 15 32 21 10 1 0 25 31 0 19 1 0 17 1 0 51 2 0 9 5 1 14 8 6 24 chain 4110 chr10 135534747 + 24464400 24464456 L1PB1 5432 - 219 273 205774 46 2 0 8 chain 40581 chr10 135534747 + 24511316 24512186 MER41A 554 - 4 547 68467 77 0 5 12 337 0 47 0 4 188 35 36 174 chain 13565 chr10 135534747 + 24523027 24523271 Tigger4a 237 + 0 237 146115 34 11 13 99 9 7 18 24 17 49 chain 38076 chr10 135534747 + 24555389 24555935 LTR12F 595 + 0 595 72021 97 2 5 44 2 0 31 5 47 78 5 7 105 0 1 34 8 9 8 1 0 54 3 0 63 0 6 6 chain 79562 chr10 135534747 + 24557292 24558151 L1PA2 6032 + 5173 6032 43798 859 chain 25458 chr10 135534747 + 24566387 24566726 THE1C 375 + 0 336 102421 180 0 4 6 15 8 138 chain 21987 chr10 135534747 + 24635110 24635406 AluY 311 + 0 288 120283 52 3 1 70 0 1 6 16 9 149 chain 214288 chr10 135534747 + 24676013 24678490 L1PA5 6144 + 3661 6144 18211 270 0 1 293 0 1 8 4 3 658 4 0 404 12 16 106 1 2 252 0 4 465 chain 13736 chr10 135534747 + 24698538 24698901 L1PB1 5432 - 5 341 145484 4 1 0 4 1 0 15 1 0 13 1 0 18 1 0 27 27 23 10 1 0 5 16 6 6 2 0 15 1 0 43 2 1 16 2 1 52 2 0 9 2 0 3 2 0 10 20 24 8 1 0 9 1 2 12 chain 83744 chr10 135534747 + 24734311 24735234 L1PA4 6152 - 0 924 42018 5 1 0 122 0 2 795 chain 20480 chr10 135534747 + 24736186 24736430 L1PA5 6144 - 10 263 125684 35 0 8 58 0 1 151 chain 10048 chr10 135534747 + 24773501 24773654 FRAM 166 - 15 166 160326 90 8 6 18 6 6 31 chain 4277 chr10 135534747 + 24853233 24853361 L1ME1 1623 - 891 1011 203498 8 1 0 23 23 24 12 24 16 37 chain 27050 chr10 135534747 + 24931175 24931464 AluY 311 + 13 303 96111 119 0 1 170 chain 192349 chr10 135534747 + 24942930 24947746 L1PA5 6144 + 3854 6130 19827 29 0 2 458 0 8 1029 2553 0 24 1 0 280 5 1 177 0 1 254 0 7 6 chain 134919 chr10 135534747 + 24944506 24946999 SVA_F 1814 + 335 1814 27026 455 40 0 121 127 0 36 2 16 208 861 0 643 chain 2402 chr10 135534747 + 24945122 24945151 SVA_F 1814 + 1151 1180 138163 29 chain 6050 chr10 135534747 + 24945153 24945249 SVA_F 1814 + 1006 1102 107796 96 chain 26970 chr10 135534747 + 24945495 24945975 SVA_F 1814 + 995 1274 81996 6 1 0 88 147 0 98 53 0 87 chain 3301 chr10 135534747 + 24945592 24945629 SVA_F 1814 + 900 937 154953 37 chain 3195 chr10 135534747 + 24945629 24945737 SVA_F 1814 + 888 1011 145518 59 0 15 49 chain 1379 chr10 135534747 + 24945835 24945887 SVA_F 1814 + 962 1011 159204 39 3 0 10 chain 485 chr10 135534747 + 24946010 24946054 SVA_F 1814 + 893 937 181726 44 chain 7850 chr10 135534747 + 24946066 24946231 SVA_F 1814 + 1011 1177 110466 128 0 1 37 chain 8209 chr10 135534747 + 24946234 24946323 SVA_F 1814 + 1177 1265 165389 9 1 0 79 chain 3069 chr10 135534747 + 24946323 24946356 SVA_F 1814 + 962 995 143791 33 chain 19515 chr10 135534747 + 24968727 24968941 L1PA4 6152 - 14 228 128613 214 chain 4906 chr10 135534747 + 25021745 25021829 MER58A 224 - 11 94 196221 45 14 13 25 chain 23039 chr10 135534747 + 25023542 25023821 AluSg7 307 - 29 307 115456 65 2 0 7 1 2 204 chain 24894 chr10 135534747 + 25038066 25038356 AluSp 311 - 16 306 105383 290 chain 28557 chr10 135534747 + 25052853 25053206 THE1A 353 - 0 353 90929 243 1 0 65 0 1 44 chain 127060 chr10 135534747 + 25053206 25054783 THE1A-int 1579 - 0 1579 28802 9 0 1 71 0 5 18 0 1 218 2 0 22 0 13 147 19 0 172 5 6 604 0 1 192 1 2 97 chain 28221 chr10 135534747 + 25054783 25055137 THE1A 353 - 0 353 92226 243 1 0 110 chain 6098 chr10 135534747 + 25081744 25081839 L1PA17 2846 - 153 246 184433 34 14 13 14 1 0 32 chain 29113 chr10 135534747 + 25098109 25098419 AluYa5 310 - 0 310 88492 310 chain 10328 chr10 135534747 + 25103476 25103794 LTR64 526 + 252 518 158993 54 101 55 30 51 48 73 3 0 6 chain 6200 chr10 135534747 + 25112880 25112975 L1MB2 1706 - 12 108 183583 40 0 1 6 4 5 31 1 0 13 chain 11833 chr10 135534747 + 25112981 25113189 MER30 238 - 0 238 152891 48 3 0 64 9 21 44 25 46 15 chain 15583 chr10 135534747 + 25114195 25114411 L1PA8 5853 - 1 214 139634 5 1 0 5 0 1 81 1 0 19 2 1 61 1 0 40 chain 52944 chr10 135534747 + 25121215 25121835 L1PA5 6144 - 3 623 57051 620 chain 66017 chr10 135534747 + 25121835 25122591 L1P1 4361 + 3042 3797 50087 173 1 0 582 chain 6010 chr10 135534747 + 25127090 25127172 L1P5 443 + 108 189 185132 27 1 0 54 chain 50565 chr10 135534747 + 25152961 25153634 Tigger1 2417 + 1677 2343 58606 429 3 0 104 3 0 35 7 6 92 chain 30123 chr10 135534747 + 25175882 25176198 AluYb8 318 - 2 318 84415 316 chain 6777 chr10 135534747 + 25181004 25181087 L1MA6 2487 - 261 344 179127 83 chain 14364 chr10 135534747 + 25194828 25195009 L1MA3 4352 - 259 443 143330 160 0 3 21 chain 15032 chr10 135534747 + 25211296 25211597 THE1B 368 + 0 309 141228 15 51 55 99 1 0 19 9 12 14 0 4 7 17 15 69 chain 137887 chr10 135534747 + 25211606 25213376 L1P2 5180 + 2 1786 26499 136 19 18 20 1 2 12 11 10 44 18 17 52 11 7 10 4 5 180 1 0 47 2 1 142 0 1 81 0 15 71 1 2 22 0 4 885 chain 88959 chr10 135534747 + 25213376 25214408 L1PA6 6164 + 5130 6162 39949 184 0 5 85 3 0 224 0 1 375 1 0 7 2 0 151 chain 14986 chr10 135534747 + 25239171 25239413 Tigger4a 237 - 0 237 141368 39 11 4 11 10 12 130 7 0 14 0 7 20 chain 3661 chr10 135534747 + 25294833 25294892 MER3 215 + 40 109 212551 16 6 16 37 chain 54267 chr10 135534747 + 25297577 25298186 L1PA4 6152 + 5529 6143 56185 42 0 4 463 0 1 104 chain 116856 chr10 135534747 + 25298902 25301803 THE1B-int 1605 + 0 1594 32177 430 1340 21 7 0 1 108 0 4 103 0 1 69 5 14 148 53 54 60 1 0 279 3 0 295 chain 69600 chr10 135534747 + 25299375 25300125 L1PA3long 6157 - 0 750 48573 750 chain 25030 chr10 135534747 + 25300382 25300663 L1PA3long 6157 + 4866 5147 104640 281 chain 7124 chr10 135534747 + 25308484 25308592 MER2 342 + 160 272 176581 31 10 14 67 chain 6766 chr10 135534747 + 25328789 25328877 L1PA5 6144 + 6045 6144 179195 53 0 9 23 1 3 11 chain 43391 chr10 135534747 + 25398408 25399017 MER41B 635 - 15 635 64946 139 40 39 90 2 11 212 0 1 119 0 2 7 chain 6454 chr10 135534747 + 25403022 25403187 MIR 256 - 5 182 181605 31 73 85 61 chain 108004 chr10 135534747 + 25411297 25412755 MER41-int 2638 + 1161 2628 34713 68 14 16 78 1 0 32 1 6 133 4 6 114 1 2 65 0 1 156 5 0 7 0 5 26 10 8 27 2 0 119 1 3 29 0 1 163 0 2 316 2 0 84 chain 39896 chr10 135534747 + 25412785 25413309 MER41A 554 + 13 554 69460 77 0 2 154 3 13 78 9 9 124 0 5 79 chain 54163 chr10 135534747 + 25427418 25428054 L1PA5 6144 - 0 639 56252 111 0 1 8 6 1 25 1 8 485 chain 43404 chr10 135534747 + 25435909 25436457 MLT2A2 560 - 0 558 64932 143 0 11 226 4 3 175 chain 46465 chr10 135534747 + 25452206 25452782 LTR12_ 688 - 0 686 61628 106 2 1 49 0 103 180 0 1 132 0 7 107 chain 3025 chr10 135534747 + 25474750 25474782 L1PA5 6144 - 3542 3574 222541 32 chain 312740 chr10 135534747 + 25474782 25478726 L1PA5 6144 + 2608 6143 12901 82 0 3 920 409 0 1165 0 1 958 2 0 395 3 1 10 chain 214154 chr10 135534747 + 25491187 25493679 L1PA5 6144 - 5 2498 18217 57 2 0 196 1 0 587 3 5 537 1 0 99 2 0 36 2 0 233 0 2 36 0 4 475 0 1 225 chain 19569 chr10 135534747 + 25493796 25494161 THE1B 368 + 0 368 128463 108 8 9 60 24 15 9 0 1 7 32 43 54 24 23 39 chain 554310 chr10 135534747 + 25536243 25542269 L1PA2 6032 - 0 6032 908 1065 0 2 735 0 4 4226 chain 37200 chr10 135534747 + 25568302 25568774 LTR15 485 - 7 485 73236 21 0 1 14 2 0 5 1 0 151 0 3 108 0 2 20 0 2 76 0 1 74 chain 7723 chr10 135534747 + 25572369 25572465 MER85 139 - 43 139 172765 96 chain 15095 chr10 135534747 + 25602168 25602334 L1PA4 6152 + 5982 6148 141051 166 chain 10699 chr10 135534747 + 25618943 25619059 L1PA2 6032 - 1 117 157421 116 chain 5795 chr10 135534747 + 25642353 25642415 L1PA3long 6157 + 6095 6157 187208 62 chain 26782 chr10 135534747 + 25647298 25647663 THE1B 368 + 0 368 97039 15 2 0 21 1 6 126 2 0 28 5 7 165 chain 130292 chr10 135534747 + 25648201 25649793 L1PA7 6471 - 13 1602 28019 477 3 0 279 0 2 80 8 14 122 1 4 371 9 0 134 1 0 26 1 0 80 chain 240168 chr10 135534747 + 25657625 25660307 L1HS 6032 - 1526 4215 16762 83 0 3 277 0 3 810 0 1 1512 chain 133402 chr10 135534747 + 25660307 25661791 L1PA3long 6157 + 4668 6157 27341 728 1 0 741 0 6 14 chain 7493 chr10 135534747 + 25666495 25666812 L1MB7 1623 - 13 280 174189 13 4 3 32 5 0 6 1 0 4 79 61 11 1 0 32 3 0 7 44 26 27 0 11 10 18 4 20 chain 27818 chr10 135534747 + 25711677 25712321 L1PB1 5432 - 31 515 93352 9 1 0 22 1 0 24 2 0 14 12 9 10 1 0 4 18 9 4 1 0 15 1 0 43 2 1 16 2 1 52 2 0 9 6 2 10 8 9 23 149 15 183 chain 157061 chr10 135534747 + 25712321 25714168 L1PA6 6164 - 2 1859 23712 106 0 1 32 0 8 6 13 6 102 0 1 346 0 3 251 0 4 98 6 1 786 0 5 101 chain 220372 chr10 135534747 + 25718516 25720941 L1PA3long 6157 + 3721 6157 17859 1589 0 4 688 1 8 147 chain 19246 chr10 135534747 + 25728033 25728397 THE1B 368 - 0 368 129391 125 78 82 38 11 12 58 5 6 34 2 0 13 chain 55726 chr10 135534747 + 25755859 25756593 MER4E1 777 - 8 757 55287 15 0 2 148 9 13 33 10 15 208 10 14 58 0 1 78 1 0 164 chain 247237 chr10 135534747 + 25759885 25762688 L1PA5 6144 - 1 2806 16382 8 5 0 379 1 0 131 2 0 1241 0 1 32 0 8 859 0 1 145 chain 43263 chr10 135534747 + 25767577 25768073 L1PA5 6144 - 2 497 65096 170 1 0 87 1 0 116 0 1 121 chain 50988 chr10 135534747 + 25779224 25779779 L1PA2 6032 - 4 559 58321 555 chain 331019 chr10 135534747 + 25799504 25804255 L1PB1 5432 - 10 4801 12164 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 36 29 43 8 7 10 1 0 51 2 0 5 9 5 14 3 2 6 1 0 19 51 42 7 0 8 137 0 1 208 0 1 83 0 16 8 22 7 120 0 4 163 0 5 315 1 0 150 1 2 108 2 5 256 0 4 63 2 0 501 4 0 61 4 0 152 0 8 54 0 5 77 0 1 42 0 3 7 0 1 132 0 1 406 8 9 28 17 24 33 0 3 33 0 4 74 0 4 5 3 0 21 4 5 95 7 5 47 26 17 34 4 10 42 8 0 49 16 24 120 0 3 96 1 0 289 0 2 17 0 11 80 9 14 13 1 7 104 chain 556854 chr10 135534747 + 25804298 25810320 L1PA2 6032 - 1 6032 625 5425 0 9 597 chain 87470 chr10 135534747 + 25828898 25829874 L1PA5 6144 + 5156 6137 40575 134 1 5 298 0 1 543 chain 70361 chr10 135534747 + 25833644 25834488 L1PA7 6471 - 6 852 48234 138 5 6 189 0 1 512 chain 12322 chr10 135534747 + 25839542 25839680 L1PA4 6152 - 11 149 150925 138 chain 57735 chr10 135534747 + 25854679 25855379 LTR30 714 - 2 714 54114 73 2 1 384 5 16 11 0 3 69 1 0 155 chain 28313 chr10 135534747 + 25869834 25870155 AluYb8 318 - 0 317 91892 186 4 0 131 chain 17401 chr10 135534747 + 25870763 25871128 THE1B 368 - 0 368 134508 125 62 68 6 1 0 27 62 60 82 chain 16481 chr10 135534747 + 25897311 25897505 L1PA7 6471 - 3 197 136978 194 chain 509711 chr10 135534747 + 25908114 25915018 L1PA7 6471 + 0 6465 6190 180 0 1 4 1 0 11 9 8 53 1 0 49 0 3 99 10 0 4 17 0 204 11 10 364 6 5 116 1 0 62 1 11 213 0 3 66 0 1 92 1 0 582 0 1 24 0 7 176 31 3 287 1 2 245 0 4 100 5 1 26 0 3 370 7 8 86 26 13 8 0 4 10 11 4 26 3 7 15 0 3 81 0 3 151 0 4 380 1 0 446 1 0 75 6 11 5 2 0 217 2 1 238 0 1 78 0 1 41 0 4 162 0 5 125 0 4 7 0 2 59 0 3 22 0 2 1 1 0 104 432 0 203 0 2 187 0 4 105 1 0 157 chain 32191 chr10 135534747 + 25913972 25914365 L1PA7 6471 + 5845 6239 80539 293 9 10 91 chain 51493 chr10 135534747 + 25929495 25930153 PABL_A 660 + 0 660 57971 576 11 13 71 chain 78851 chr10 135534747 + 25962175 25963225 MER11C 1089 + 0 1063 44126 242 4 13 62 0 4 21 1 0 186 79 76 84 0 4 7 1 0 38 0 1 325 chain 3521 chr10 135534747 + 25994356 25994397 MSTA 426 + 385 426 215044 41 chain 21507 chr10 135534747 + 26000358 26000763 MSTA 426 - 18 426 122116 135 107 105 11 1 5 123 1 2 27 chain 305490 chr10 135534747 + 26005763 26009632 HERVH-int 3825 + 0 3825 13189 42 2 1 214 0 17 59 2 1 135 0 5 5 1 0 6 2 0 34 3 4 9 1 0 26 23 22 7 0 1 16 28 0 14 1 0 13 12 9 16 1 0 42 1 2 79 1 0 59 2 5 380 15 0 207 9 0 25 0 2 13 1 0 59 1 0 157 6 0 93 0 1 1626 42 40 379 chain 29736 chr10 135534747 + 26011445 26011855 LTR7 482 + 0 482 85707 69 8 46 109 8 40 41 1 3 174 chain 23020 chr10 135534747 + 26013820 26014219 MER39B 650 + 241 634 115529 99 10 11 70 52 53 65 18 10 85 chain 31840 chr10 135534747 + 26029910 26030547 MLT2A1 477 - 0 477 81106 6 0 4 28 14 2 11 185 31 10 4 0 211 1 5 27 1 2 57 0 1 82 chain 8180 chr10 135534747 + 26037398 26037758 MLT2B4 540 - 54 494 170067 8 4 0 59 29 70 17 189 232 54 chain 97266 chr10 135534747 + 26044746 26045949 LTR12C 1709 + 0 1709 37490 208 6 8 248 4 5 181 0 485 81 29 12 352 0 33 63 0 2 31 chain 3895 chr10 135534747 + 26046513 26046557 MADE1 96 + 46 90 208924 44 chain 33877 chr10 135534747 + 26049655 26050075 MER75 514 + 45 468 77816 238 4 7 178 chain 43421 chr10 135534747 + 26050511 26051061 MER41A 554 - 0 541 64907 121 1 2 299 19 9 110 chain 22235 chr10 135534747 + 26057892 26058199 LTR7 482 - 8 396 119186 213 0 31 8 1 11 8 10 0 20 0 51 17 17 16 13 chain 281247 chr10 135534747 + 26059370 26063362 HERVH-int 3825 - 0 3825 14574 487 8 218 1099 1 15 203 0 3 5 8 5 74 8 35 188 118 0 22 389 40 202 15 0 145 13 14 291 1 0 15 0 2 5 3 4 54 2 1 42 0 37 15 29 0 24 1 0 10 1 0 30 0 56 484 chain 43696 chr10 135534747 + 26063372 26063846 LTR7 482 - 8 482 64571 474 chain 24732 chr10 135534747 + 26086700 26087241 L1PA15 4387 - 31 549 106265 27 6 0 10 55 63 39 1 0 5 8 4 20 9 8 18 0 1 31 1 0 26 1 0 17 1 2 29 15 6 46 11 6 63 16 15 7 2 0 19 8 6 50 chain 17127 chr10 135534747 + 26089399 26089653 L1PA5 6144 + 5926 6137 135241 9 2 0 49 0 1 94 42 0 58 chain 16504 chr10 135534747 + 26094067 26094276 Tigger2a 444 + 119 322 136904 18 3 0 3 3 0 182 chain 36578 chr10 135534747 + 26094276 26095169 MER41C 542 - 0 542 74126 54 0 2 72 365 3 58 20 22 15 4 5 21 0 2 51 3 6 181 0 1 49 chain 25098 chr10 135534747 + 26098221 26098520 AluYk4 311 + 0 298 104308 132 8 7 159 chain 5004 chr10 135534747 + 26102737 26102816 5S 121 - 0 85 195094 15 8 14 56 chain 12924 chr10 135534747 + 26108618 26108907 L1PB1 5432 - 10 273 148535 18 1 0 13 5 4 17 1 0 21 20 17 5 2 0 30 14 1 15 1 0 41 25 23 50 2 0 8 chain 2538 chr10 135534747 + 26129431 26129458 L1PA7 6471 + 5533 5560 232670 27 chain 73498 chr10 135534747 + 26129458 26130361 L1PA7 6471 + 5561 6465 46784 53 0 4 194 0 2 185 4 5 292 14 6 58 7 9 96 chain 9842 chr10 135534747 + 26130835 26130946 L1PA6 6164 + 6049 6160 161380 111 chain 5501 chr10 135534747 + 26134190 26134257 MER4C 627 + 560 627 190030 67 chain 54534 chr10 135534747 + 26145544 26146172 L1PA5 6144 - 0 628 56011 628 chain 4778 chr10 135534747 + 26149847 26149909 MER41A 554 - 88 155 197600 22 0 4 12 0 1 28 chain 23823 chr10 135534747 + 26153521 26153887 THE1B 368 - 0 366 111347 85 4 0 40 2 1 10 9 8 10 0 4 10 1 0 4 12 16 11 1 0 167 chain 87434 chr10 135534747 + 26170031 26171058 LTR5A 1029 - 0 1029 40587 240 0 3 618 15 1 20 0 13 134 chain 15991 chr10 135534747 + 26194598 26194801 MER44A 345 + 132 334 138379 169 1 0 33 chain 18858 chr10 135534747 + 26198005 26198311 THE1B 368 + 0 306 130497 169 1 0 13 25 32 13 4 3 12 2 1 40 4 0 23 chain 50983 chr10 135534747 + 26247216 26248145 L1PREC2 3366 - 368 1183 58323 23 26 12 11 4 1 29 3 1 15 3 0 6 2 0 12 31 23 10 4 1 4 1 0 43 11 10 17 0 1 27 8 6 35 1 0 67 2 1 68 4 8 112 88 10 104 0 1 4 1 0 153 chain 5268 chr10 135534747 + 26247812 26247875 L1PREC2 3366 - 848 911 192338 63 chain 20476 chr10 135534747 + 26249378 26249646 Tigger2 2703 - 61 333 125696 89 0 1 158 7 10 14 chain 57249 chr10 135534747 + 26253367 26254191 L1M1 2793 - 671 1497 54366 15 2 1 29 25 24 41 0 4 125 0 1 182 5 6 25 6 0 68 0 1 10 12 13 211 9 11 59 chain 64982 chr10 135534747 + 26272501 26273312 L1PBa 3878 + 988 1795 50581 157 5 0 50 0 1 249 2 4 173 2 0 173 chain 221494 chr10 135534747 + 26273636 26277280 L1PB1 5432 + 2120 5422 17783 100 0 1 127 3 0 18 457 135 30 5 36 46 0 1 4 8 7 203 6 5 196 12 0 140 0 1 556 16 13 37 1 0 186 7 8 102 0 1 556 0 3 191 55 60 220 1 2 12 3 0 23 1 0 4 1 0 14 5 1 9 2 0 9 11 1 42 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 22 7 6 6 1 0 18 chain 500382 chr10 135534747 + 26279446 26285146 L1PA5 6144 - 5 5717 6814 13 1 0 314 2 1 1466 0 4 164 0 1 184 0 2 488 1 0 281 5 2 1118 0 3 14 1 2 665 1 6 267 6 8 709 chain 46435 chr10 135534747 + 26291181 26291751 LTR10F 562 - 0 562 61652 44 11 0 286 1 4 228 chain 294097 chr10 135534747 + 26295057 26298322 L1PA3long 6157 + 2890 6157 13760 151 0 1 2238 0 6 537 1 2 249 6 0 83 chain 3192 chr10 135534747 + 26303566 26303607 MLT2D 439 - 398 439 221074 41 chain 18330 chr10 135534747 + 26330011 26330249 L1M1 2793 - 108 345 131983 12 1 0 45 1 0 81 0 1 98 chain 28371 chr10 135534747 + 26354764 26355073 AluYg6 310 + 0 303 91696 178 6 0 125 chain 26847 chr10 135534747 + 26360820 26361217 THE1D 372 - 0 372 96816 86 11 12 81 1 0 19 1 0 73 0 1 20 6 0 5 19 0 75 chain 390132 chr10 135534747 + 26364221 26369883 L1PB1 5432 - 5 5371 10453 14 1 0 9 1 0 13 1 0 21 1 0 24 2 0 14 12 9 14 15 6 8 3 0 14 1 0 40 5 4 16 2 1 48 300 69 51 1 0 5 3 4 422 3 0 75 3 1 201 1 7 382 1 0 128 2 6 83 6 0 43 17 17 39 20 20 32 0 4 4 1 0 105 0 1 588 0 1 50 6 1 237 3 0 6 1 3 86 15 6 219 6 9 137 3 4 26 5 0 393 0 15 270 19 14 7 8 0 8 2 1 319 0 1 73 8 3 109 0 1 4 1 0 230 25 25 169 25 20 35 20 0 342 chain 6389 chr10 135534747 + 26386195 26386294 L1MB8 1703 - 173 274 182103 47 0 3 19 6 5 27 chain 513541 chr10 135534747 + 26386318 26392441 L1PA5 6144 - 1 6142 5828 475 44 15 25 1 0 278 0 5 169 0 1 697 0 2 1015 0 3 115 4 6 29 4 1 7 0 3 17 1 2 76 0 1 279 0 9 1705 10 14 24 9 0 136 1 0 4 1 2 128 1 2 459 0 12 200 1 2 90 1 15 62 4 5 51 chain 79197 chr10 135534747 + 26426213 26427269 MER11A 1151 + 0 1151 43945 55 0 99 141 4 0 31 0 2 60 0 1 54 0 1 50 1 0 4 7 8 23 0 3 8 0 7 21 0 1 110 0 1 155 41 24 112 0 1 179 chain 124504 chr10 135534747 + 26476601 26477996 L1PA4 6152 - 180 1580 29542 898 4 10 180 1 0 312 chain 11214 chr10 135534747 + 26477996 26478119 L1PA4 6152 + 4462 4585 155047 123 chain 9595 chr10 135534747 + 26478182 26478302 MLT1B 390 - 263 383 162620 120 chain 40354 chr10 135534747 + 26535897 26536417 MER41A 554 - 0 554 68802 155 4 5 160 4 1 44 1 32 43 0 5 109 chain 7718 chr10 135534747 + 26542800 26542933 MER1B 344 - 5 128 172808 58 25 18 39 3 0 8 chain 33182 chr10 135534747 + 26569155 26569602 MER4A1 472 - 0 472 78933 223 2 23 124 0 2 75 8 10 15 chain 41792 chr10 135534747 + 26595192 26595715 MER41A 554 + 0 554 66910 385 0 21 34 0 4 24 0 5 65 0 1 15 chain 15639 chr10 135534747 + 26611451 26611801 L1PB1 5432 - 2 318 139469 8 2 0 18 1 0 14 1 0 20 1 0 24 2 0 15 67 50 38 7 6 14 8 7 48 2 0 9 5 1 12 1 0 12 1 0 20 chain 45650 chr10 135534747 + 26621044 26621634 PABL_A 660 + 0 650 62353 152 6 5 18 0 39 110 0 5 74 0 1 70 0 16 160 chain 78824 chr10 135534747 + 26637359 26638422 MER11A 1151 + 0 1146 44135 55 0 99 22 8 0 52 1 0 64 6 2 149 0 1 94 0 7 138 5 7 111 0 3 6 0 26 26 43 0 58 0 1 46 1 0 16 0 1 162 chain 75444 chr10 135534747 + 26655522 26656568 MER11A 1151 + 0 1146 45798 55 0 99 76 1 0 62 3 5 30 0 2 44 1 9 61 0 1 94 0 1 144 5 7 101 49 0 19 0 26 11 10 17 56 0 1 60 6 7 158 chain 3782 chr10 135534747 + 26661363 26661407 LTR41 747 + 0 44 210636 44 chain 74197 chr10 135534747 + 26665826 26666773 LTR5_Hs 974 - 13 974 46415 178 7 7 116 0 1 197 0 4 163 9 17 194 0 1 83 chain 34566 chr10 135534747 + 26671152 26671670 MLT2A2 560 - 0 560 76799 37 17 18 6 1 0 86 0 11 30 32 64 127 1 0 181 chain 4004 chr10 135534747 + 26671872 26671917 MLT1A0 366 + 321 366 207338 45 chain 59055 chr10 135534747 + 26685549 26686248 L1PA5 6144 + 5444 6143 53362 699 chain 23894 chr10 135534747 + 26687203 26687477 L1PA5 6144 - 0 274 110933 274 chain 8406 chr10 135534747 + 26687478 26687574 L1PA5 6144 + 5785 5881 168816 96 chain 41678 chr10 135534747 + 26691818 26692390 L1PA8 5853 + 5295 5853 67056 193 0 1 75 1 0 46 2 0 67 9 0 14 3 0 49 2 1 19 2 1 32 5 7 12 1 2 30 1 0 9 chain 48137 chr10 135534747 + 26692914 26693558 L1PA8 5853 + 5212 5853 60375 98 0 4 250 1 0 44 2 0 71 12 10 51 2 1 19 2 1 92 chain 111283 chr10 135534747 + 26707744 26709012 L1PA4 6152 - 9 1279 33865 104 0 1 24 7 0 17 0 6 304 0 1 765 0 1 47 chain 38780 chr10 135534747 + 26712572 26713168 LTR10E 629 + 0 622 71036 14 0 1 121 4 0 22 19 16 96 1 27 27 1 0 8 1 2 4 1 0 18 4 5 15 1 0 161 1 0 11 31 39 35 chain 13153 chr10 135534747 + 26715969 26716477 Tigger2a 444 + 0 184 147633 44 333 0 49 0 9 82 chain 28671 chr10 135534747 + 26718100 26718453 MER1A 529 + 154 510 90442 305 9 12 39 chain 45420 chr10 135534747 + 26723416 26724092 MER50 708 + 0 686 62570 58 2 0 37 15 16 63 0 1 114 10 14 126 1 0 4 5 8 10 0 1 48 0 3 34 32 33 4 1 0 112 chain 11817 chr10 135534747 + 26725695 26726029 MER50 708 - 519 708 152957 17 0 1 33 178 34 46 2 0 58 chain 13651 chr10 135534747 + 26726072 26726283 Tigger2 2703 - 45 257 145776 72 9 8 23 0 4 13 5 0 65 0 3 24 chain 24272 chr10 135534747 + 26736030 26736329 AluY 311 + 10 308 108836 113 2 0 9 0 1 10 3 0 7 0 3 155 chain 61412 chr10 135534747 + 26747870 26748545 L1PA3long 6157 - 0 677 52148 425 0 1 38 0 1 212 chain 17636 chr10 135534747 + 26752670 26752914 L1PA8 5853 - 1 243 133892 92 1 0 19 2 1 25 10 11 25 1 0 69 chain 27731 chr10 135534747 + 26767957 26768252 AluYa5 310 + 16 310 93934 116 1 0 178 chain 20210 chr10 135534747 + 26893835 26894058 L1PA4 6152 - 77 300 126499 223 chain 7062 chr10 135534747 + 26894058 26894139 L1PA4 6152 + 6065 6146 177014 81 chain 6015 chr10 135534747 + 26895596 26895663 L1PA3long 6157 + 6090 6157 185091 67 chain 3457 chr10 135534747 + 26913750 26913790 MSTB2 466 - 241 281 216043 40 chain 15088 chr10 135534747 + 26920537 26920718 L1PA5 6144 - 6 187 141064 181 chain 104377 chr10 135534747 + 26920718 26921881 L1PA5 6144 + 4780 5944 35644 367 0 1 796 chain 13874 chr10 135534747 + 26923065 26923225 L1PA4 6152 - 689 849 144993 160 chain 58322 chr10 135534747 + 26923225 26923886 L1PA4 6152 + 5472 6134 53796 536 0 1 125 chain 8728 chr10 135534747 + 27018691 27018818 MER85 139 + 0 139 167041 42 0 1 53 9 20 23 chain 22782 chr10 135534747 + 27046723 27047023 AluSq2 311 + 9 310 116671 124 13 14 163 chain 20919 chr10 135534747 + 27089688 27089945 AluSp 311 + 11 292 124213 31 0 24 226 chain 22374 chr10 135534747 + 27107660 27107939 AluSg7 307 + 22 298 118611 109 0 1 39 4 0 127 chain 5081 chr10 135534747 + 27116451 27116512 Tigger1 2417 - 1710 1772 194288 55 0 1 6 chain 5203 chr10 135534747 + 27130013 27130093 MER58A 224 + 122 204 193001 21 8 10 51 chain 28298 chr10 135534747 + 27180535 27180866 L1PA7 6471 + 6118 6449 91953 331 chain 76150 chr10 135534747 + 27182398 27183366 LTR5_Hs 974 + 0 974 45394 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 20456 chr10 135534747 + 27188194 27188445 AluY 311 + 38 296 125739 221 3 10 27 chain 67287 chr10 135534747 + 27190694 27191983 L1PA8 5853 + 4887 5853 49527 118 5 4 71 9 7 67 1 6 18 3 0 6 0 1 174 6 9 53 4 5 52 320 0 86 1 0 43 3 1 70 20 18 41 7 6 17 1 0 93 chain 21762 chr10 135534747 + 27195003 27195481 LTR12C 1709 + 875 1203 121169 188 156 0 8 0 47 41 41 0 44 chain 1966 chr10 135534747 + 27195285 27195332 LTR12C 1709 + 837 886 214467 20 2 4 25 chain 25236 chr10 135534747 + 27202555 27202857 AluY 311 + 7 305 103556 116 2 0 10 2 0 172 chain 3966 chr10 135534747 + 27215412 27215461 MSTB2 466 + 185 234 207895 49 chain 3251 chr10 135534747 + 27219083 27219119 MER30 238 - 0 36 219984 36 chain 8797 chr10 135534747 + 27247753 27248035 L1PA11 4918 - 289 551 166661 18 144 125 12 2 0 80 4 5 22 chain 127069 chr10 135534747 + 27253984 27255521 L1PA8A 6298 + 4754 6291 28800 71 1 0 449 0 1 214 2 1 90 2 1 82 0 1 274 0 1 352 chain 143394 chr10 135534747 + 27274782 27276356 L1PA4 6152 + 4564 6138 25581 1574 chain 22571 chr10 135534747 + 27280693 27281114 MER4A 717 - 251 646 117715 4 1 0 54 111 87 150 5 4 96 chain 23780 chr10 135534747 + 27286535 27286946 LTR14A 344 + 0 344 111596 45 3 0 3 44 0 5 0 3 56 38 7 142 3 11 72 chain 22462 chr10 135534747 + 27289659 27289941 AluY 311 + 9 287 118186 55 2 0 66 3 0 23 0 1 133 chain 20833 chr10 135534747 + 27307931 27308186 AluY 311 + 8 260 124501 12 3 0 6 1 0 106 0 1 127 chain 3984 chr10 135534747 + 27312814 27312861 MER34C 514 - 77 124 207633 47 chain 7729 chr10 135534747 + 27317101 27317234 Tigger4b 360 + 26 175 172722 14 22 40 87 2 0 8 chain 21794 chr10 135534747 + 27357029 27357355 THE1D 372 + 0 332 121039 69 30 33 80 14 17 133 chain 18759 chr10 135534747 + 27382818 27383217 THE1C 375 + 0 375 130806 40 23 0 28 69 71 68 21 24 27 1 0 73 9 5 14 1 0 25 chain 24792 chr10 135534747 + 27397973 27398265 AluY 311 + 0 288 105931 127 4 0 161 chain 22691 chr10 135534747 + 27419506 27419799 AluSq2 311 + 0 301 117122 41 6 14 246 chain 5576 chr10 135534747 + 27421389 27421448 MER41B 635 + 479 538 189318 59 chain 24288 chr10 135534747 + 27433794 27434079 AluY 311 + 6 292 108715 126 0 1 159 chain 26258 chr10 135534747 + 27440532 27440839 AluY 311 + 4 305 98981 128 0 1 164 7 0 8 chain 24235 chr10 135534747 + 27464128 27464410 AluSp 311 - 29 311 109023 282 chain 25139 chr10 135534747 + 27478419 27478699 L1PA5 6144 + 5852 6138 104077 138 0 6 142 chain 3456 chr10 135534747 + 27482377 27482418 U2 167 - 119 160 216059 41 chain 32699 chr10 135534747 + 27488968 27489347 MER41A 554 + 0 394 79692 85 0 3 263 0 12 31 chain 49465 chr10 135534747 + 27502049 27503290 L1MA3 4352 + 3337 4328 59413 44 1 0 14 7 8 40 0 3 161 389 79 21 0 1 220 1 4 124 137 195 7 2 0 24 1 0 4 3 2 29 1 0 11 chain 10634 chr10 135534747 + 27515895 27516061 MER30 238 + 67 238 157677 31 10 0 25 10 25 90 chain 5036 chr10 135534747 + 27521186 27521244 U7 62 - 3 61 194770 58 chain 24288 chr10 135534747 + 27522701 27522978 AluSp 311 + 10 287 108717 277 chain 18443 chr10 135534747 + 27543218 27543449 L1PA7 6471 - 7 237 131664 12 1 0 218 chain 6744 chr10 135534747 + 27546096 27546320 LTR12C 1709 + 650 877 179367 27 112 114 46 1 0 23 1 3 14 chain 159271 chr10 135534747 + 27584487 27586411 SVA_F 1814 - 0 1814 23432 15 0 1 627 0 50 158 1 16 59 0 1 28 184 7 852 chain 9871 chr10 135534747 + 27585382 27585559 SVA_F 1814 - 545 722 127448 177 chain 544812 chr10 135534747 + 27588182 27594289 L1PA4 6152 + 6 6136 2098 569 0 4 2252 0 1 356 0 4 58 0 3 306 4 3 1045 0 1 545 0 5 143 0 2 793 7 11 29 chain 29684 chr10 135534747 + 27616787 27617215 L1PA11 4918 - 432 852 85890 12 2 0 80 2 1 58 10 4 17 1 2 179 8 8 59 chain 16129 chr10 135534747 + 27660357 27660716 THE1B 368 + 0 368 137970 78 59 64 35 61 66 63 7 6 56 chain 28200 chr10 135534747 + 27668151 27668685 L1PA15 4387 - 39 572 92310 18 5 0 15 3 1 41 9 6 50 2 1 11 9 5 15 5 4 13 1 3 35 1 0 4 0 5 17 1 0 36 8 19 117 1 0 25 20 19 37 12 13 23 chain 16425 chr10 135534747 + 27668842 27669057 L1PA16 3655 - 65 279 137136 13 1 0 201 chain 537668 chr10 135534747 + 27707200 27713315 L1PA4 6152 + 10 6152 3210 1202 0 1 203 0 5 1363 1 3 463 0 3 915 0 1 437 0 1 427 1 0 198 3 1 476 0 1 292 0 6 30 0 1 92 0 9 12 chain 11773 chr10 135534747 + 27719304 27719491 MER30B 195 - 0 195 153166 39 3 0 22 17 26 13 2 0 12 0 4 79 chain 106179 chr10 135534747 + 27719874 27721070 L1P1 4361 + 2567 3771 35219 118 1 0 830 0 9 247 chain 113937 chr10 135534747 + 27741330 27743574 L1MA3 4352 - 0 1861 33108 14 17 13 10 1 0 16 32 30 9 2 0 25 4 0 101 104 80 171 12 9 44 7 9 156 0 1 74 1 2 24 331 0 79 14 28 53 73 46 139 2 1 22 4 5 51 6 7 4 1 0 300 4 5 33 22 17 275 0 1 7 chain 29293 chr10 135534747 + 27754238 27754689 LTR7 482 + 0 482 87607 86 51 0 15 15 14 17 0 51 47 0 31 44 0 1 176 chain 33081 chr10 135534747 + 27754691 27755142 HERVH-int 3825 + 0 446 79080 33 1 0 91 2 0 203 6 5 64 20 17 5 0 2 26 chain 36039 chr10 135534747 + 27759415 27759866 LTR7 482 + 0 482 74850 101 15 14 115 0 31 44 0 1 176 chain 45246 chr10 135534747 + 27770560 27771121 MLT2A2 560 - 0 560 62774 232 0 1 123 0 1 74 8 5 124 chain 36828 chr10 135534747 + 27777328 27777969 L1PB1 5432 - 28 646 73767 13 2 1 20 1 0 24 2 0 11 45 33 6 3 0 13 0 8 33 6 5 16 2 1 53 2 0 9 4 0 12 1 0 7 2 1 21 3 0 11 2 3 87 0 2 199 13 11 18 chain 24898 chr10 135534747 + 27778196 27778538 THE1A 353 - 0 353 105358 111 18 30 102 2 1 109 chain 5199 chr10 135534747 + 27782000 27782117 L1MA4A 3247 - 72 182 193033 27 38 32 9 1 0 42 chain 23254 chr10 135534747 + 27824744 27825023 AluY 311 + 11 295 114420 75 0 3 43 4 5 93 0 1 64 chain 24590 chr10 135534747 + 27841117 27841398 L1PA4 6152 - 11 294 107043 276 0 2 5 chain 10089 chr10 135534747 + 27867848 27868182 MSTB 430 - 39 409 160137 15 24 23 36 156 185 42 0 8 61 chain 529916 chr10 135534747 + 27875962 27882368 L1PA7 6471 + 6 6465 4197 57 0 4 344 0 2 11 6 7 621 6 12 155 0 3 339 1 0 136 0 3 59 0 2 866 0 6 61 0 1 171 1 0 73 0 3 81 5 4 239 1 3 260 1 0 25 1 5 12 0 3 42 0 1 219 6 3 16 1 13 137 1 0 309 4 0 360 0 4 936 0 4 80 0 2 273 0 3 322 1 0 4 0 1 154 1 0 8 chain 26347 chr10 135534747 + 27901810 27902161 THE1B 368 + 0 364 98626 44 0 15 114 1 0 133 7 6 52 chain 9008 chr10 135534747 + 27924020 27924136 MST-int 1221 + 1006 1120 165552 66 2 0 48 chain 3070 chr10 135534747 + 27928571 27928609 L2a 937 - 408 446 223562 38 chain 3442 chr10 135534747 + 27940816 27940905 Tigger2a 444 - 67 162 216346 14 33 37 19 0 2 23 chain 23562 chr10 135534747 + 27943507 27943843 THE1B 368 - 19 368 112786 37 7 6 18 0 2 94 2 0 17 7 6 114 1 16 39 chain 3419 chr10 135534747 + 27946059 27946103 L1PB1 5432 - 232 274 216775 33 2 0 9 chain 82870 chr10 135534747 + 27956009 27956935 L1PA4 6152 + 5231 6152 42387 460 0 2 278 7 0 181 chain 15312 chr10 135534747 + 27968026 27968212 L1PA6 6164 + 5981 6162 140452 174 5 0 7 chain 38574 chr10 135534747 + 27969974 27971369 Tigger3b 1229 + 54 850 71334 4 0 1 52 29 38 33 774 156 59 3 0 6 0 3 162 0 4 8 1 3 6 9 0 19 0 1 7 0 4 62 0 2 9 6 11 61 0 1 8 3 2 74 chain 21083 chr10 135534747 + 27982744 27983106 THE1B 368 + 0 368 123613 163 70 77 66 14 13 49 chain 23476 chr10 135534747 + 28041006 28041364 THE1B 368 + 0 353 113235 129 11 2 38 1 0 25 9 15 4 0 1 10 21 19 110 chain 17196 chr10 135534747 + 28057912 28058232 THE1B 368 + 0 368 135047 15 2 0 93 45 85 7 1 0 13 1 5 10 6 14 64 7 6 56 chain 29477 chr10 135534747 + 28112787 28113096 AluYf4 310 + 0 309 86735 309 chain 397133 chr10 135534747 + 28133951 28138484 L1PA5 6144 + 1587 6138 10194 115 7 0 651 1 0 1106 4 5 578 1 3 190 1 2 758 0 13 285 0 8 695 0 1 141 chain 457221 chr10 135534747 + 28159301 28164481 L1PA5 6144 - 16 5201 8505 1891 1 2 771 4 5 1152 0 1 190 0 1 886 2 1 25 4 5 170 0 1 84 chain 78652 chr10 135534747 + 28164498 28165436 L1P1 4361 + 4 942 44206 938 chain 311783 chr10 135534747 + 28187946 28192659 L1P2 5180 + 3 4426 12933 92 0 5 7 6 1 37 64 63 15 54 50 40 348 133 55 16 6 8 1 0 27 108 32 157 31 10 46 0 15 164 1 2 4 1 0 68 4 5 4 1 0 35 0 3 41 0 3 116 15 14 467 0 1 482 0 1 114 0 1 164 10 11 57 0 1 12 0 4 457 0 9 653 0 1 4 9 7 539 0 1 179 chain 71828 chr10 135534747 + 28194211 28195023 L1PA7 6471 + 4725 5538 47549 757 0 1 55 chain 6989 chr10 135534747 + 28195023 28195104 L1PA7 6471 + 5539 5620 177543 81 chain 72602 chr10 135534747 + 28195104 28195952 L1PA7 6471 + 5624 6468 47216 390 2 0 445 2 0 9 chain 41930 chr10 135534747 + 28202431 28203084 L1PA15 4387 + 3688 4327 66718 44 2 1 77 0 2 16 4 0 62 2 0 43 1 0 171 1 0 23 5 6 52 1 0 22 4 0 6 20 19 35 6 3 19 0 3 21 2 0 14 chain 10349 chr10 135534747 + 28219456 28219581 AluYc 301 + 167 297 158906 7 0 5 118 chain 22450 chr10 135534747 + 28222863 28223200 THE1B 368 + 12 367 118252 21 7 22 117 3 4 22 12 11 4 0 1 53 0 1 39 6 7 53 chain 11045 chr10 135534747 + 28241331 28241543 L1PA8 5853 - 0 217 156036 68 0 1 24 33 31 16 18 25 9 1 0 43 chain 8858 chr10 135534747 + 28319765 28320004 MSTD 398 + 22 347 166333 5 0 1 49 26 25 28 71 156 37 1 2 22 chain 18575 chr10 135534747 + 28327815 28328161 L1PB1 5432 - 5 322 131294 5 1 0 4 1 0 14 1 0 9 0 3 22 1 0 24 2 0 15 1 0 4 2 0 30 15 3 13 1 0 44 1 0 16 2 1 52 17 11 10 1 0 33 1 0 4 chain 38541 chr10 135534747 + 28330139 28330566 L1PA4 6152 + 5714 6141 71379 427 chain 4004 chr10 135534747 + 28335672 28335729 MER20B 722 - 406 464 207336 10 0 1 4 1 0 16 0 1 26 chain 3744 chr10 135534747 + 28373358 28373402 MER5A1 166 + 26 70 211271 44 chain 32514 chr10 135534747 + 28374807 28375227 L1PA8 5853 + 5433 5848 79998 129 1 0 47 2 0 68 1 0 9 1 3 5 0 1 45 2 1 19 1 0 27 2 0 61 chain 24874 chr10 135534747 + 28416325 28416669 THE1B 368 - 4 355 105493 52 1 5 5 2 0 129 2 1 64 5 6 60 0 5 24 chain 10554 chr10 135534747 + 28453525 28453706 MER30 238 + 6 232 158030 24 7 29 52 1 27 15 6 0 9 0 6 22 3 0 42 chain 25631 chr10 135534747 + 28455329 28455625 AluSp 311 - 5 301 101575 296 chain 24266 chr10 135534747 + 28465677 28465968 L1PA5 6144 + 5855 6144 108866 277 3 1 11 chain 30963 chr10 135534747 + 28546357 28546687 L1PA2 6032 + 5702 6032 82575 330 chain 15072 chr10 135534747 + 28566200 28566444 MER30 238 - 7 230 141106 105 6 0 7 26 13 5 2 0 93 chain 3853 chr10 135534747 + 28599786 28599835 MADE1 96 - 3 51 209588 34 1 0 14 chain 4959 chr10 135534747 + 28601236 28601347 LTR12F 595 - 316 451 195590 44 8 8 12 14 5 11 1 34 21 chain 24391 chr10 135534747 + 28618292 28618581 AluY 311 + 17 304 108128 213 3 1 73 chain 13086 chr10 135534747 + 28636505 28636859 MER63C 923 - 478 827 147898 63 157 155 85 1 0 4 0 1 36 3 0 5 chain 20201 chr10 135534747 + 28660632 28660904 L1PA16 3655 + 3316 3588 126525 22 0 2 98 0 1 134 7 4 11 chain 3737 chr10 135534747 + 28669858 28669945 MLT2B1 522 - 10 95 211362 17 15 25 8 12 0 35 chain 27348 chr10 135534747 + 28687315 28688057 MER57A1 433 + 0 433 95122 29 311 0 97 0 1 131 63 64 111 chain 26635 chr10 135534747 + 28691627 28691981 THE1C 375 - 0 375 97531 26 1 0 166 1 0 5 0 1 31 0 4 62 0 18 62 chain 27947 chr10 135534747 + 28706594 28707017 Tigger1 2417 + 1949 2377 93179 134 14 20 105 2 0 25 0 1 4 11 13 25 6 7 89 3 0 5 chain 11181 chr10 135534747 + 28717683 28717825 MLT2B4 540 - 399 540 155513 71 1 0 70 chain 3973 chr10 135534747 + 28741186 28741247 MADE1 96 - 1 91 207791 23 6 35 32 chain 6297 chr10 135534747 + 28743866 28743943 L1MB1 2102 - 1648 1725 182820 77 chain 38864 chr10 135534747 + 28746649 28747108 LTR2 463 - 0 463 70925 198 0 1 206 0 3 55 chain 47361 chr10 135534747 + 28788928 28789597 LTR30 714 - 10 700 60925 13 1 0 27 14 18 7 5 0 12 0 3 4 1 0 84 8 9 66 9 20 17 0 3 149 4 3 15 0 5 214 0 2 19 chain 15060 chr10 135534747 + 28857477 28857665 L1PA5 6144 - 0 191 141137 11 1 3 35 0 1 141 chain 24390 chr10 135534747 + 28860996 28861283 AluSg4 309 + 11 298 108136 287 chain 3442 chr10 135534747 + 28862299 28862355 L1MB8 1703 - 174 217 216331 8 13 0 35 chain 27070 chr10 135534747 + 28903039 28903321 AluYd8 298 - 16 298 96037 282 chain 16905 chr10 135534747 + 28924117 28924357 AluJo 314 + 5 252 135837 120 7 0 8 13 27 92 chain 22978 chr10 135534747 + 28935410 28935686 AluSp 311 - 25 303 115726 164 0 2 112 chain 44794 chr10 135534747 + 28936410 28937290 L1MA5A 2387 - 13 818 63300 12 6 4 18 12 10 13 43 18 4 1 0 27 6 7 28 33 7 7 3 0 36 1 0 28 2 0 45 40 40 37 1 0 91 7 8 85 43 27 162 0 4 20 2 0 67 chain 46384 chr10 135534747 + 28944042 28944579 SVA_C 1631 + 1045 1611 61699 13 1 38 386 8 0 129 chain 3200 chr10 135534747 + 28947194 28947246 MER5A 189 + 4 57 220933 20 6 7 26 chain 8960 chr10 135534747 + 28956847 28956954 U6 107 + 0 107 165826 107 chain 19493 chr10 135534747 + 29016312 29016614 THE1D 372 + 18 332 128676 34 23 33 11 0 2 5 2 0 79 9 11 139 chain 8231 chr10 135534747 + 29025073 29025176 LTR26B 539 - 53 154 169775 5 2 0 96 chain 32198 chr10 135534747 + 29028231 29028661 MER57A1 433 + 2 433 80526 237 5 6 31 0 1 4 1 0 152 chain 435147 chr10 135534747 + 29035543 29041511 L1PA7 6471 - 5 5341 9191 152 6 5 54 0 1 107 9 10 104 4 0 29 311 0 389 1 0 83 4 15 360 8 7 171 1 0 67 1 3 237 0 4 348 0 3 481 16 0 50 13 14 436 1 0 128 0 6 272 4 8 33 0 2 254 0 1 155 304 0 718 0 1 130 2 1 27 21 0 158 1 2 161 10 12 51 13 3 83 chain 128213 chr10 135534747 + 29060088 29061603 SVA_B 1603 + 13 1599 28520 6 0 1 14 10 7 170 0 1 414 8 0 216 14 97 8 0 1 15 4 0 13 1 0 14 1 0 173 0 4 80 0 1 343 3 0 8 chain 16650 chr10 135534747 + 29069881 29070078 MLT2A2 560 - 364 560 136531 13 1 0 183 chain 3334 chr10 135534747 + 29070426 29070465 MADE1 96 + 2 42 218334 28 0 1 11 chain 99019 chr10 135534747 + 29103948 29105158 LTR12C 1709 - 0 1709 37023 357 2 1 9 1 2 112 0 4 21 0 485 281 0 1 267 1 0 127 0 10 32 chain 22771 chr10 135534747 + 29108344 29108624 AluSc 308 + 10 295 116720 37 0 6 204 2 1 37 chain 6161 chr10 135534747 + 29163320 29163393 5S 121 - 1 74 183870 73 chain 11120 chr10 135534747 + 29169866 29170073 MER30 238 + 0 225 155733 16 34 33 41 11 33 76 5 2 24 chain 124863 chr10 135534747 + 29184678 29186270 LTR12C 1709 - 0 1709 29434 82 1 0 64 1 0 335 0 4 106 54 2 4 1 0 22 8 14 228 0 118 331 18 61 40 0 1 297 chain 2587 chr10 135534747 + 29185275 29185317 LTR12C 1709 - 549 591 207333 42 chain 22297 chr10 135534747 + 29197022 29197399 THE1D 372 + 0 371 118923 50 9 0 11 0 4 6 12 8 43 18 19 25 25 27 178 chain 35077 chr10 135534747 + 29223400 29223803 SVA_D 2077 + 281 2077 76083 218 0 1393 185 chain 27661 chr10 135534747 + 29239818 29240372 L1PB1 5432 - 10 513 94178 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 17 20 9 4 1 0 15 1 0 33 18 17 10 2 1 52 2 0 9 5 1 14 8 6 23 5 0 7 24 14 98 5 0 77 chain 25391 chr10 135534747 + 29281789 29282091 AluSp 311 - 9 311 102734 302 chain 29754 chr10 135534747 + 29288298 29288744 MLT2A2 560 - 0 560 85637 6 0 4 136 10 119 77 51 50 99 0 2 67 chain 43884 chr10 135534747 + 29294003 29294489 L1PA3long 6157 - 1 487 64350 486 chain 10684 chr10 135534747 + 29309157 29309288 AluY 311 + 0 136 157476 30 1 0 93 0 6 7 chain 21145 chr10 135534747 + 29336418 29336674 AluSp 311 - 49 311 123387 49 0 6 207 chain 2980 chr10 135534747 + 29351613 29351646 LTR54 533 + 430 463 225445 33 chain 4519 chr10 135534747 + 29356736 29356788 MIRb 242 + 88 140 200559 52 chain 21292 chr10 135534747 + 29359245 29359539 AluSp 311 + 11 294 122892 69 6 1 51 2 0 141 13 9 12 chain 20429 chr10 135534747 + 29360008 29360370 THE1B 368 - 0 367 125821 128 15 27 13 0 1 4 31 21 39 25 27 107 chain 11827 chr10 135534747 + 29372833 29373354 MSTC 436 + 0 217 152915 94 353 50 43 1 0 30 chain 3097 chr10 135534747 + 29375454 29375489 MADE1 96 - 60 95 222969 35 chain 26844 chr10 135534747 + 29409934 29410229 AluYf4 310 + 0 296 96830 212 0 1 83 chain 28138 chr10 135534747 + 29416765 29417171 MER4A1 472 + 0 428 92513 14 1 3 79 3 4 35 1 0 89 0 21 13 18 17 153 chain 4035 chr10 135534747 + 29448750 29448832 MER51A 677 - 601 677 206854 6 4 0 15 15 13 42 chain 42452 chr10 135534747 + 29460484 29461092 LTR9B 643 - 7 638 66075 115 1 15 62 22 23 87 0 1 103 6 7 15 4 6 129 3 6 19 0 1 42 chain 31240 chr10 135534747 + 29473979 29474424 MER57A1 433 - 0 433 82098 13 0 1 39 19 12 78 0 1 220 14 7 62 chain 22751 chr10 135534747 + 29563804 29564105 AluY 311 + 0 296 116820 133 29 24 139 chain 39249 chr10 135534747 + 29564535 29565407 MER41A 554 - 0 554 70389 89 0 1 74 1 2 192 331 11 92 19 20 42 6 5 26 chain 3350 chr10 135534747 + 29572521 29572563 L1MB5 1630 + 1403 1445 218046 42 chain 28317 chr10 135534747 + 29589945 29590314 THE1B 368 + 0 368 91878 172 6 5 191 chain 16312 chr10 135534747 + 29601206 29601427 MER30 238 + 0 238 137457 112 10 21 19 0 6 80 chain 4443 chr10 135534747 + 29611441 29611495 MER96B 391 + 240 294 201419 54 chain 282664 chr10 135534747 + 29623590 29626978 L1PA6 6164 + 5 6154 14492 106 0 1 347 16 15 142 1 2 189 6 21 41 0 1 125 7 2741 971 0 9 319 0 1 1118 chain 11025 chr10 135534747 + 29639492 29639736 Tigger4a 237 - 0 236 156113 23 1 2 29 85 76 106 chain 8551 chr10 135534747 + 29644246 29644385 L1PA8 5853 - 1 162 168011 17 0 18 19 0 6 32 18 16 53 chain 44929 chr10 135534747 + 29653410 29653998 Harlequin-int 5206 - 4334 4928 63138 255 3 0 132 3 0 84 1 2 36 0 5 13 4 5 31 1 3 17 0 3 8 chain 140768 chr10 135534747 + 29654940 29656605 LTR12C 1709 + 0 1709 26027 252 0 16 354 1 29 186 1 0 272 11 8 107 0 4 481 chain 86581 chr10 135534747 + 29693246 29694554 MER57-int 2662 - 4 1289 40938 33 3 0 30 8 3 9 1 0 24 4 1 10 1 0 5 1 0 10 43 29 65 11 6 10 1 0 90 4 1 368 13 17 39 3 0 130 1 2 157 4 20 105 3 2 88 1 0 17 2 0 14 chain 5626 chr10 135534747 + 29695957 29696051 MER41-int 2638 + 85 170 188824 15 21 12 58 chain 48089 chr10 135534747 + 29712185 29712697 L1HS 6032 - 0 512 60409 512 chain 90577 chr10 135534747 + 29715639 29716669 LTR5A 1029 + 0 1029 39442 150 1 0 879 chain 13516 chr10 135534747 + 29725651 29725815 HERVIP10FH-int 2884 - 2573 2735 146301 103 2 0 59 chain 46720 chr10 135534747 + 29727777 29728338 LTR10F 562 - 0 562 61438 127 1 0 139 3 0 61 0 3 192 0 2 38 chain 35137 chr10 135534747 + 29730345 29730791 MER4A1 472 - 0 472 76012 116 0 1 107 1 23 203 0 1 4 0 2 15 chain 33147 chr10 135534747 + 29733366 29733802 MLT2A1 477 - 0 477 78991 24 0 2 31 3 35 181 0 1 23 0 1 10 5 2 127 0 8 32 chain 4116 chr10 135534747 + 29755900 29755952 MIR 256 + 82 134 205690 52 chain 10057 chr10 135534747 + 29832010 29832139 MER85 139 + 0 139 160292 90 0 10 39 chain 98247 chr10 135534747 + 29837869 29838950 L1PA3long 6157 + 5070 6146 37225 234 5 0 842 chain 23825 chr10 135534747 + 29841207 29841511 AluSg 306 + 12 300 111334 47 16 0 241 chain 13583 chr10 135534747 + 29866488 29866682 L1PB2 3958 - 120 310 146042 63 1 0 18 7 5 70 2 1 33 chain 47706 chr10 135534747 + 29903193 29903744 L1PA7 6471 + 5913 6464 60690 551 chain 23551 chr10 135534747 + 29912500 29912784 AluSc8 310 + 3 289 112846 133 0 1 31 0 1 120 chain 14103 chr10 135534747 + 29962541 29962733 THE1D 372 - 192 372 144207 19 0 1 26 12 0 92 1 0 42 chain 33906 chr10 135534747 + 29964749 29965188 LOR1a 498 + 10 452 77764 7 0 1 53 1 0 155 7 9 57 0 1 159 chain 29873 chr10 135534747 + 29975892 29976321 LTR34 700 + 12 480 85192 106 9 29 11 14 33 186 5 6 29 1 0 68 chain 8654 chr10 135534747 + 29981876 29981999 MER85 139 + 5 139 167451 91 10 21 22 chain 153885 chr10 135534747 + 29984915 29986738 SVA_D 2077 + 50 2075 24105 8 0 19 831 0 185 78 20 0 16 49 0 160 1 0 5 1 0 6 0 49 516 0 20 132 chain 3069 chr10 135534747 + 29985868 29985917 SVA_D 2077 + 960 1060 90115 43 0 51 6 chain 114183 chr10 135534747 + 29994986 29996428 L1PA8A 6298 - 354 1817 33036 338 4 9 99 7 9 157 7 22 34 1 0 195 0 1 11 7 0 6 0 6 146 1 2 89 1 0 339 chain 58605 chr10 135534747 + 30044329 30045099 MER4E1 777 + 0 777 53637 18 1 2 59 0 1 238 4 5 96 2 1 125 1 5 35 14 15 177 chain 81556 chr10 135534747 + 30058036 30058945 L1PA5 6144 - 3 913 42953 425 0 1 484 chain 20938 chr10 135534747 + 30086985 30087233 AluSg7 307 - 49 298 124157 128 1 2 119 chain 22486 chr10 135534747 + 30091126 30091480 THE1A 353 + 0 353 118078 47 62 59 4 1 0 77 0 3 163 chain 27039 chr10 135534747 + 30120323 30120709 MSTA 426 - 0 392 96147 219 0 2 51 39 42 8 0 1 69 chain 24060 chr10 135534747 + 30126035 30126398 THE1B 368 + 0 368 109983 172 1 0 12 54 59 49 0 1 75 chain 33808 chr10 135534747 + 30135612 30136078 MER4A1 472 - 0 472 77928 68 10 9 129 0 1 33 6 7 129 0 2 46 0 2 24 0 1 21 chain 5430 chr10 135534747 + 30211313 30211377 MER1A 529 + 465 529 190706 64 chain 33424 chr10 135534747 + 30217784 30218191 MER48 407 - 0 407 78525 407 chain 38846 chr10 135534747 + 30218878 30219428 MLT2A2 560 - 0 560 70954 147 3 14 184 49 48 167 chain 15574 chr10 135534747 + 30251986 30252334 THE1D 372 + 0 344 139659 15 0 2 15 1 0 24 38 30 25 33 35 20 44 45 133 chain 7832 chr10 135534747 + 30258759 30258852 MER85 139 + 0 93 172113 93 chain 19276 chr10 135534747 + 30259940 30260177 L1PA7 6471 + 6228 6466 129305 201 4 5 32 chain 22852 chr10 135534747 + 30275888 30276324 L1PB1 5432 - 10 408 116328 18 1 0 13 4 5 16 1 0 24 7 5 9 1 0 6 2 0 18 14 6 6 2 0 7 1 0 7 1 0 46 1 0 15 2 1 52 2 0 9 6 2 13 8 6 24 3 0 11 7 0 79 chain 20421 chr10 135534747 + 30281493 30281785 LTR9B 643 - 344 643 125836 44 0 1 4 1 0 25 0 6 8 1 0 4 6 8 43 4 0 113 0 4 39 chain 3150 chr10 135534747 + 30291148 30291212 MIRb 242 - 31 90 221919 15 17 12 32 chain 28450 chr10 135534747 + 30320679 30320981 AluYa5 310 - 7 309 91372 302 chain 2591 chr10 135534747 + 30321859 30321900 MIR 256 - 125 168 231806 25 2 4 14 chain 10178 chr10 135534747 + 30327335 30327636 AluJo 314 + 5 314 159729 36 4 144 37 137 0 34 0 2 33 1 4 19 chain 4506 chr10 135534747 + 30343305 30343361 MADE2 80 - 11 68 200713 15 0 1 41 chain 27665 chr10 135534747 + 30343604 30343897 AluYf4 310 - 17 310 94167 293 chain 17375 chr10 135534747 + 30353074 30353401 MSTC 436 + 108 417 134580 75 3 4 24 0 3 20 8 0 10 0 1 29 3 0 12 0 2 58 3 12 12 51 28 19 chain 39714 chr10 135534747 + 30388641 30389175 LTR10F 562 + 0 562 69737 50 2 0 83 9 37 60 2 26 10 21 0 169 1 0 127 chain 2892 chr10 135534747 + 30389225 30389262 MER4E 760 - 9 48 227170 14 0 2 23 chain 31778 chr10 135534747 + 30389685 30390446 MER4B 649 - 55 576 81202 30 1 0 111 11 12 20 1 2 11 0 2 50 0 15 136 305 48 62 1 0 22 chain 22573 chr10 135534747 + 30411726 30411997 AluY 311 + 37 307 117700 83 6 7 36 2 0 144 chain 209457 chr10 135534747 + 30435291 30438249 L1PB1 5432 - 10 2932 18528 18 14 12 22 1 0 24 2 0 14 1 0 8 2 0 11 8 0 11 1 0 6 2 0 15 1 0 44 7 6 10 2 1 36 1 4 12 2 0 9 5 1 14 1 0 9 1 0 21 14 12 19 0 2 263 8 7 132 3 1 50 2 0 117 7 8 86 6 7 109 6 11 298 22 0 235 2 0 35 0 2 8 1 0 6 0 1 434 0 2 103 18 19 136 0 4 70 6 10 302 4 7 5 3 0 113 chain 114210 chr10 135534747 + 30451600 30452988 LTR12C 1709 + 0 1709 33026 335 1 44 271 0 278 184 1 0 5 3 1 100 10 14 395 1 0 82 chain 3641 chr10 135534747 + 30463238 30463297 L1MC5 759 - 41 102 212952 8 2 0 28 2 6 19 chain 29184 chr10 135534747 + 30478926 30480284 MER57A1 433 - 27 432 88129 125 16 14 236 951 0 30 chain 11119 chr10 135534747 + 30484402 30484616 L1PB1 5432 - 5 195 155738 5 2 0 18 1 0 11 5 4 19 1 0 21 5 3 15 1 0 4 2 0 30 14 1 16 1 0 43 chain 5071 chr10 135534747 + 30484616 30484709 Tigger1 2417 + 2216 2314 194417 23 1 9 6 2 0 41 5 4 15 chain 19774 chr10 135534747 + 30511402 30511657 AluSp 311 + 10 287 127894 203 19 41 33 chain 3502 chr10 135534747 + 30512562 30512599 MSTB 430 + 10 47 215325 37 chain 3149 chr10 135534747 + 30538703 30538739 MLT2D 439 + 403 439 221940 36 chain 21387 chr10 135534747 + 30551659 30551927 THE1B-int 1605 + 1320 1590 122563 258 0 2 10 chain 21353 chr10 135534747 + 30555549 30555839 AluY 311 + 0 298 122674 13 0 7 22 0 1 89 0 1 21 11 10 134 chain 5711 chr10 135534747 + 30557681 30557771 L1MA7 2200 + 1822 1915 188002 7 1 0 34 6 10 42 chain 459148 chr10 135534747 + 30561364 30567164 L1PA8 5853 + 50 5800 8438 22 2 0 10 1 0 13 48 21 185 19 7 12 5 4 8 0 15 116 0 1 187 28 8 158 0 12 764 0 1 4 0 1 427 17 1 34 10 0 51 0 1 317 0 1 316 1 2 353 0 1 716 1 2 372 4 11 11 4 3 81 0 4 31 1 0 676 2 0 53 19 21 138 16 18 324 1 0 46 3 1 67 6 5 7 1 0 49 3 2 19 4 3 37 chain 9047 chr10 135534747 + 30567780 30567954 THE1B 368 + 0 175 165334 18 0 1 87 46 47 16 1 0 6 chain 35776 chr10 135534747 + 30568491 30568917 THE1B-int 1605 + 0 426 75170 426 chain 29468 chr10 135534747 + 30582855 30583264 MER57A1 433 + 10 433 86768 128 14 25 9 1 2 102 7 9 148 chain 114079 chr10 135534747 + 30585670 30587445 L1PB2 3958 - 120 1891 33081 63 1 0 22 2 0 36 1 2 36 13 12 49 1 0 73 1 0 85 12 8 13 2 0 39 1 0 5 1 2 22 4 0 10 1 0 52 2 0 28 0 9 297 7 18 29 10 9 66 11 8 63 0 2 56 10 8 138 3 7 79 111 105 14 4 9 28 0 2 142 10 0 74 4 7 44 chain 7110 chr10 135534747 + 30610208 30610288 HY3 101 - 2 82 176678 80 chain 11974 chr10 135534747 + 30630822 30631310 MER44A 345 - 107 292 152312 6 4 0 51 309 3 24 0 3 46 0 4 48 chain 88360 chr10 135534747 + 30695060 30696046 L1PA4 6152 - 16 1002 40242 323 0 1 340 1 0 322 chain 9243 chr10 135534747 + 30713564 30713677 MER41B 635 - 7 120 164337 113 chain 42306 chr10 135534747 + 30717498 30718072 LTR61 567 - 9 567 66261 190 12 0 140 9 0 130 7 0 32 0 11 29 0 1 25 chain 17328 chr10 135534747 + 30733184 30733387 AluSp 311 + 74 277 134716 203 chain 34915 chr10 135534747 + 30765043 30765493 LTR2 463 + 0 463 76317 136 0 12 214 12 13 88 chain 345697 chr10 135534747 + 30766606 30770782 Harlequin-int 5206 + 143 4271 11737 155 6 0 78 1 0 108 8 0 63 0 2 462 1 0 169 0 1 107 3 1 274 1 2 696 2 1 232 7 0 173 8 0 86 1 0 247 0 1 302 3 1 50 13 5 117 13 4 208 1 2 581 chain 37271 chr10 135534747 + 30770890 30771349 LTR2 463 + 0 463 73132 11 0 3 348 12 13 88 chain 5716 chr10 135534747 + 30771468 30771533 LTR2 463 + 398 463 187967 65 chain 15816 chr10 135534747 + 30788005 30788239 L1PB2 3958 + 3609 3838 138907 8 1 0 64 1 0 72 2 0 7 16 15 63 chain 67830 chr10 135534747 + 30811065 30812129 MER11B 1079 + 0 1063 49314 199 0 2 157 0 5 94 15 14 25 107 99 99 5 12 12 1 0 18 50 42 15 1 0 5 0 3 16 10 11 235 chain 3347 chr10 135534747 + 30841024 30841059 MER1A 529 - 184 219 218095 35 chain 34853 chr10 135534747 + 30866432 30866958 MLT2A1 477 - 0 477 76404 55 73 23 14 4 0 211 3 7 24 0 1 142 chain 12086 chr10 135534747 + 30874305 30874461 L1PB4 2604 - 54 214 151850 58 0 4 98 chain 12949 chr10 135534747 + 30875537 30875696 MER41-int 2638 - 916 1074 148436 54 1 0 104 chain 16676 chr10 135534747 + 30878972 30879291 L1PA11 4918 + 4243 4552 136477 88 4 13 45 21 18 68 3 1 12 1 0 20 4 0 9 8 3 10 13 9 13 chain 12243 chr10 135534747 + 30889674 30889844 LTR39 781 - 608 781 151241 131 16 19 23 chain 5156 chr10 135534747 + 30899284 30899342 L1PA8 5853 + 5506 5564 193482 58 chain 3768 chr10 135534747 + 30899343 30899389 L1PA8 5853 + 5564 5610 210831 46 chain 9018 chr10 135534747 + 30899391 30899536 L1PA8 5853 + 5610 5751 165507 68 2 1 8 3 1 50 4 3 10 chain 189340 chr10 135534747 + 30906659 30908755 L1PA4 6152 + 4044 6140 20116 2096 chain 2944 chr10 135534747 + 30909069 30909102 MER58A 224 + 46 79 226244 33 chain 26746 chr10 135534747 + 30916228 30916658 Tigger2a 444 + 2 378 97179 76 0 1 101 60 2 86 11 14 96 chain 22196 chr10 135534747 + 30928545 30928967 L1PB1 5432 + 5030 5427 119370 52 7 8 13 1 0 11 1 0 21 1 0 12 1 0 10 6 2 8 2 0 53 2 1 59 1 0 13 17 4 22 23 27 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 7095 chr10 135534747 + 30967848 30967956 L1MC1 2226 - 192 296 176796 12 0 1 28 2 0 13 3 0 50 chain 21885 chr10 135534747 + 30967964 30968235 AluSg4 309 + 0 274 120689 33 0 3 238 chain 18812 chr10 135534747 + 31005538 31005754 L1PA5 6144 + 5928 6144 130640 216 chain 3735 chr10 135534747 + 31080835 31080876 MADE1 96 + 55 96 211386 41 chain 19697 chr10 135534747 + 31084482 31084835 MSTA 426 - 37 426 128112 72 1 21 47 24 22 21 2 0 58 24 48 58 11 7 35 chain 4822 chr10 135534747 + 31116101 31116162 MIR 256 + 98 159 197101 61 chain 2992 chr10 135534747 + 31136275 31136306 MER52D 1964 + 1220 1251 225210 31 chain 22322 chr10 135534747 + 31184957 31185251 AluY 311 + 9 309 118813 42 16 22 236 chain 8825 chr10 135534747 + 31190247 31190367 LTR12C 1709 - 0 119 166526 84 13 12 23 chain 13667 chr10 135534747 + 31190390 31190554 HERV9-int 5642 - 5478 5642 145720 164 chain 5442 chr10 135534747 + 31218638 31218746 LTR12C 1709 - 991 1058 190588 35 41 0 32 chain 69646 chr10 135534747 + 31234335 31235100 L1PA2 6032 - 0 770 48551 5 2 0 28 0 7 730 chain 38151 chr10 135534747 + 31235100 31235518 L1PA2 6032 + 4845 5263 71676 418 chain 50536 chr10 135534747 + 31236346 31236962 L1P1 4361 - 3732 4360 58623 55 1 0 414 0 12 81 1 2 64 chain 489018 chr10 135534747 + 31236965 31242339 L1PA2 6032 + 651 6027 7410 150 1 0 1463 0 4 301 1 0 584 0 1 1359 1 0 1351 5 0 9 3 6 6 0 2 140 chain 6247 chr10 135534747 + 31242506 31242578 L1PA2 6032 + 5960 6032 183186 72 chain 6829 chr10 135534747 + 31250101 31250179 L1HS 6032 + 5954 6032 178725 78 chain 20700 chr10 135534747 + 31252531 31252813 AluSg4 309 + 11 293 124966 68 8 0 44 1 0 100 7 16 54 chain 24860 chr10 135534747 + 31257363 31257670 AluSp 311 - 3 311 105565 222 6 7 79 chain 10318 chr10 135534747 + 31267733 31267860 Tigger1 2417 - 1264 1397 159053 33 0 6 94 chain 11082 chr10 135534747 + 31268576 31268702 L1P3 4156 - 1208 1338 155876 61 0 4 65 chain 31306 chr10 135534747 + 31311489 31311984 HSMAR1 1287 + 784 1287 81981 128 68 69 32 8 12 62 8 0 18 0 11 171 chain 111407 chr10 135534747 + 31314895 31316169 L1PA5 6144 + 4860 6132 33833 321 2 1 629 1 0 321 chain 22511 chr10 135534747 + 31345219 31345523 LTR12C 1709 + 773 1164 117981 64 2 1 179 13 101 46 chain 3041 chr10 135534747 + 31345523 31345570 LTR12C 1709 + 1039 1086 220330 6 0 1 4 2 1 35 chain 26880 chr10 135534747 + 31348836 31349144 AluSp 311 - 6 311 96698 173 3 0 132 chain 18239 chr10 135534747 + 31354397 31354746 L1PB1 5432 + 5105 5420 132236 9 3 0 20 1 0 12 1 0 10 2 0 3 2 0 8 2 0 53 2 1 15 1 0 44 1 0 16 3 0 6 16 6 19 24 19 45 1 0 13 1 0 16 chain 41905 chr10 135534747 + 31356558 31357092 L1PA8 5853 + 5326 5853 66750 238 1 0 44 2 0 70 17 15 47 2 1 19 1 0 93 chain 10842 chr10 135534747 + 31385678 31385918 L1PB1 5432 + 5204 5420 156819 16 2 1 12 7 6 33 14 13 11 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5541 chr10 135534747 + 31387898 31387966 L1PA8 5853 + 5785 5853 189647 68 chain 513477 chr10 135534747 + 31395314 31400936 L1PA3long 6157 - 0 5627 5837 338 0 1 2608 0 4 2676 chain 58622 chr10 135534747 + 31433569 31434266 L1PA8A 6298 - 8 738 53628 123 2 1 468 1 35 103 chain 32715 chr10 135534747 + 31452639 31453254 MLT2A1 477 - 0 477 79663 19 1 0 31 1 0 15 177 27 6 0 3 203 0 4 14 0 5 7 0 1 9 0 1 12 0 1 5 1 0 114 chain 18146 chr10 135534747 + 31459597 31459960 THE1D 372 - 0 372 132471 133 59 61 6 0 6 64 49 50 52 chain 13596 chr10 135534747 + 31459960 31460127 MER107 203 + 32 203 145993 86 0 1 43 0 3 38 chain 24755 chr10 135534747 + 31469514 31469811 AluSc 308 + 11 308 106138 297 chain 20718 chr10 135534747 + 31494545 31495027 L1PB1 5432 + 4980 5400 124897 123 1 2 12 3 0 21 1 0 6 19 14 11 2 0 47 32 21 21 32 10 12 1 0 21 45 31 14 2 0 24 1 0 21 1 0 9 chain 168405 chr10 135534747 + 31517628 31519706 L1PA8A 6298 - 12 2059 22236 101 1 0 538 42 10 146 3 2 194 8 11 1045 chain 87500 chr10 135534747 + 31519706 31520844 L1PA8A 6298 + 3102 4261 40471 20 1 2 90 0 3 154 0 1 321 4 5 7 1 0 151 10 13 4 1 0 186 0 13 71 0 1 117 chain 21499 chr10 135534747 + 31535637 31536029 L1PA16 3655 - 82 434 122150 29 9 4 53 6 6 71 1 0 32 54 21 50 10 11 6 2 0 69 chain 54560 chr10 135534747 + 31539984 31540609 L1PA4 6152 + 5517 6143 55989 484 0 1 141 chain 5506 chr10 135534747 + 31555421 31555492 MADE1 96 - 0 95 189978 24 0 24 47 chain 339832 chr10 135534747 + 31573238 31576976 L1PA3long 6157 + 2423 6157 11902 747 4 1 613 1 0 2373 chain 105179 chr10 135534747 + 31581668 31582838 L1PA3long 6157 + 4984 6157 35456 6 1 0 314 0 4 34 0 1 555 1 0 259 chain 72845 chr10 135534747 + 31595738 31596544 L1PA3long 6157 + 4643 5449 47101 806 chain 18574 chr10 135534747 + 31598016 31598239 L1PA5 6144 - 15 238 131297 139 0 1 7 3 1 57 0 1 17 chain 5208 chr10 135534747 + 31601900 31601966 MLT1D 503 + 437 503 192935 66 chain 4062 chr10 135534747 + 31651578 31651651 SVA_F 1814 - 958 1188 206463 33 10 167 30 chain 2898 chr10 135534747 + 31686131 31686163 L1PA6 6164 - 15 47 227062 32 chain 250395 chr10 135534747 + 31694638 31700013 L1PA7 6471 - 1 3091 16220 12 3 6 24 0 10 136 0 1 149 0 1 139 1 0 225 0 2 62 14 10 69 0 3 156 4 5 106 1 0 163 1 0 80 2321 4 431 0 2 224 0 1 300 6 11 431 1 0 124 0 12 70 1 0 121 chain 48507 chr10 135534747 + 31696027 31696562 L1PA3long 6157 - 1 536 60101 535 chain 159878 chr10 135534747 + 31696562 31698295 L1PA3long 6157 + 3884 5617 23357 1733 chain 22253 chr10 135534747 + 31700013 31700292 L1PA7 6471 + 3024 3307 118760 76 5 9 198 chain 27249 chr10 135534747 + 31700292 31700585 AluYb8 318 + 14 306 95435 118 1 0 174 chain 5004 chr10 135534747 + 31700599 31700676 L1P3 4156 + 3315 3378 195095 20 14 0 43 chain 34499 chr10 135534747 + 31701192 31701594 L1PA5 6144 - 1 404 76909 73 0 1 329 chain 25559 chr10 135534747 + 31716499 31716801 AluY 311 + 0 296 101932 18 1 0 111 5 0 167 chain 103851 chr10 135534747 + 31716810 31718339 L1PA13 3608 - 1530 3080 35758 52 5 2 23 11 23 16 5 9 5 1 0 15 1 0 153 7 11 194 2 4 47 8 12 70 5 3 137 1 5 21 0 1 48 1 0 61 3 6 53 3 1 7 1 0 51 0 3 5 16 6 237 1 0 125 0 4 37 2 0 47 1 6 46 1 0 4 chain 199191 chr10 135534747 + 31729220 31731504 L1PA5 6144 + 3866 6143 19270 434 7 8 989 0 4 54 4 0 771 1 0 9 7 0 8 chain 551574 chr10 135534747 + 31732341 31738366 L1PA2 6032 - 1 6030 1244 1524 1 0 1375 0 4 643 1 0 794 0 2 1521 11 0 7 0 11 148 chain 225331 chr10 135534747 + 31742558 31745337 L1PA7 6471 + 3677 6467 17571 5 0 3 142 1 2 7 3 0 443 8 6 177 12 5 198 0 8 144 0 1 41 2 0 511 7 8 236 0 3 30 0 1 210 0 1 451 1 0 20 1 2 43 1 2 37 0 4 13 1 2 34 chain 543394 chr10 135534747 + 31758139 31764144 L1PA3long 6157 + 10 6152 2282 142 0 1 623 0 128 1486 0 3 866 0 4 2745 0 1 143 chain 3324 chr10 135534747 + 31805849 31805911 MER5C1 258 + 57 100 218512 8 19 0 35 chain 23887 chr10 135534747 + 31823697 31823989 AluSg7 307 + 8 301 110981 123 0 1 169 chain 21181 chr10 135534747 + 31840503 31840835 THE1B 368 - 12 368 123272 103 52 62 19 1 0 113 0 15 44 chain 454228 chr10 135534747 + 31851731 31857374 L1PA7 6471 - 14 5566 8606 119 0 1 196 5 6 123 0 2 84 1 0 84 3 0 21 0 1 204 1 0 253 0 1 407 1 0 283 0 4 576 0 1 262 6 2 238 1 0 592 7 5 351 17 0 77 0 26 10 33 9 291 1 0 184 0 1 274 0 10 118 1 3 535 132 30 80 1 17 71 chain 7734 chr10 135534747 + 31876441 31876717 LTR12D 1347 - 654 760 172686 19 170 0 87 chain 3570 chr10 135534747 + 31876467 31876507 LTR12D 1347 - 845 885 214136 40 chain 24234 chr10 135534747 + 31920974 31921338 THE1D 372 - 0 372 109030 148 49 56 63 0 1 104 chain 380390 chr10 135534747 + 31926576 31931114 L1PA5 6144 - 0 4373 10743 11 2 3 775 0 2 729 0 2 483 165 0 1831 6 0 373 1 0 125 0 2 37 chain 13509 chr10 135534747 + 31928583 31928741 L1PA5 6144 - 3310 3469 145998 87 0 1 71 chain 5106 chr10 135534747 + 31940285 31940360 MADE1 96 + 0 91 194018 28 4 20 43 chain 35129 chr10 135534747 + 31954689 31955137 MER4A1 472 - 0 472 76021 226 4 26 190 2 1 7 0 1 4 0 2 15 chain 28277 chr10 135534747 + 31980728 31981116 MSTA-int 1630 + 1227 1622 92012 116 0 1 112 8 9 50 1 0 16 7 13 78 chain 530246 chr10 135534747 + 32002641 32008743 L1PA5 6144 - 21 6141 4161 134 8 7 681 3 7 1138 0 1 1366 0 1 432 0 12 37 0 1 531 3 4 248 0 1 489 1 0 194 0 1 265 3 0 260 1 2 308 chain 54107 chr10 135534747 + 32022573 32023296 MER4A 717 + 7 717 56290 111 27 6 169 0 7 98 0 1 83 0 1 224 1 0 10 chain 23384 chr10 135534747 + 32024364 32024708 THE1B 368 - 0 368 113741 125 35 45 30 1 0 104 5 20 44 chain 118276 chr10 135534747 + 32024708 32026198 THE1B-int 1605 - 0 1522 31702 299 25 29 52 0 2 767 1 26 123 0 1 223 chain 3265 chr10 135534747 + 32045793 32045840 MIRb 242 + 77 124 219676 33 1 0 4 0 1 9 chain 30541 chr10 135534747 + 32051570 32051943 MER4A 717 - 347 717 83353 247 3 0 123 chain 51888 chr10 135534747 + 32052930 32053546 L1PA8 5853 + 5233 5852 57691 331 1 0 44 2 0 59 16 23 70 1 0 92 chain 19293 chr10 135534747 + 32065099 32065422 THE1B 368 + 0 349 129260 40 0 15 119 1 0 24 13 14 23 42 53 61 chain 15209 chr10 135534747 + 32077542 32077765 MER30 238 - 8 235 140752 98 22 26 103 chain 16464 chr10 135534747 + 32164686 32165041 L1MB3 1562 - 61 433 137029 34 1 0 24 45 18 4 1 0 32 5 14 24 1 0 19 0 4 9 0 32 52 48 49 48 0 1 8 chain 25429 chr10 135534747 + 32170843 32171111 AluYa5 310 - 12 280 102550 268 chain 63387 chr10 135534747 + 32180240 32180988 L1PA5 6144 - 4234 4982 51215 539 0 3 5 3 0 201 chain 370815 chr10 135534747 + 32180988 32185171 L1PA5 6144 + 1929 6138 11064 377 1 0 12 0 9 363 5 8 477 0 5 502 1 0 1611 0 8 225 0 3 609 chain 4040 chr10 135534747 + 32251043 32251088 MER50 708 - 22 67 206782 45 chain 25928 chr10 135534747 + 32252872 32253358 L1M1 2793 + 663 1141 100309 26 77 77 6 2 0 33 1 0 26 2 0 8 1 0 54 21 18 78 0 2 12 1 0 138 chain 174316 chr10 135534747 + 32258054 32260558 SVA_E 1901 + 15 1901 21558 138 1 0 664 613 0 110 3 0 31 2 1 942 chain 6608 chr10 135534747 + 32258903 32258977 SVA_F 1814 + 1019 1120 180400 12 0 27 62 chain 23952 chr10 135534747 + 32259010 32259269 SVA_F 1814 + 1014 1274 110609 162 0 1 97 chain 8562 chr10 135534747 + 32259322 32259470 SVA_E 1901 + 817 989 79339 63 17 43 4 1 0 31 2 1 30 chain 22809 chr10 135534747 + 32261369 32261745 MER83 447 - 52 444 116533 60 51 49 106 19 37 140 chain 61474 chr10 135534747 + 32267577 32268262 SVA_B 1603 - 0 683 52125 434 0 2 205 5 1 41 chain 21453 chr10 135534747 + 32275889 32276157 L1PA10 4194 + 3873 4150 122324 56 0 12 175 3 0 34 chain 24541 chr10 135534747 + 32296710 32297024 AluY 311 + 6 311 107304 39 1 0 74 9 0 13 0 1 15 0 1 50 1 0 112 chain 29259 chr10 135534747 + 32313074 32313381 AluYa5 310 - 3 310 87745 307 chain 10278 chr10 135534747 + 32330570 32330833 AluJo 314 - 26 294 159243 14 11 18 29 7 0 7 91 97 76 1 0 27 chain 22324 chr10 135534747 + 32333318 32333625 AluSp 311 + 1 300 118803 120 8 7 91 8 4 61 3 0 16 chain 17879 chr10 135534747 + 32386450 32386765 THE1D 372 - 44 359 133165 90 50 58 101 11 12 16 9 0 38 chain 23863 chr10 135534747 + 32389530 32389871 L1PA8 5853 - 6 347 111116 71 14 20 15 3 2 51 2 1 8 2 1 70 2 0 46 1 0 56 chain 30553 chr10 135534747 + 32408242 32408655 L1PA8 5853 + 5447 5853 83335 117 1 0 46 2 0 68 2 1 9 9 8 40 7 6 18 1 0 93 chain 26897 chr10 135534747 + 32422626 32423015 LTR7B 505 - 0 505 96636 25 2 0 5 0 1 20 14 13 89 0 41 22 1 0 4 1 0 31 14 83 56 0 10 105 chain 164733 chr10 135534747 + 32424441 32426712 HERVH-int 3825 - 0 2631 22693 245 3 1 9 5 4 4 0 1 68 6 5 39 23 23 166 18 17 57 8 383 316 0 1 284 2 1 99 11 16 127 4 8 160 7 6 7 0 1 231 8 13 104 10 1 4 1 0 200 15 0 30 chain 25372 chr10 135534747 + 32427391 32427780 LTR7B 505 - 0 505 102824 25 2 0 5 0 1 20 14 13 88 25 64 37 12 81 56 0 10 105 chain 3390 chr10 135534747 + 32462612 32462671 U7 62 + 1 61 217275 31 11 12 17 chain 10763 chr10 135534747 + 32462698 32462829 L1MB5 1630 + 652 784 157139 28 0 1 103 chain 24436 chr10 135534747 + 32466003 32466287 AluSc5 308 + 1 285 107879 284 chain 43734 chr10 135534747 + 32467915 32468447 MER41A 554 - 0 541 64527 40 0 1 39 0 6 200 0 1 88 0 1 165 chain 3493 chr10 135534747 + 32469827 32469864 MER87 546 + 102 139 215475 37 chain 7109 chr10 135534747 + 32483171 32483273 L1MB3 1562 - 1424 1520 176692 39 7 1 56 chain 22823 chr10 135534747 + 32483496 32483788 AluSc 308 + 11 286 116481 21 11 0 3 6 0 251 chain 33711 chr10 135534747 + 32486314 32486805 LTR19A 502 - 0 496 78076 41 0 1 38 20 21 50 0 9 29 1 2 89 0 2 152 4 3 42 8 0 17 chain 4757 chr10 135534747 + 32491684 32491748 L1MA5A 2387 - 94 155 197835 12 3 0 49 chain 153728 chr10 135534747 + 32496791 32498849 L1PA5 6144 - 6 1745 24121 198 4 0 459 316 0 738 0 1 343 chain 20861 chr10 135534747 + 32502927 32503249 THE1B 368 - 20 368 124426 39 0 2 56 43 53 30 1 0 111 1 16 41 chain 68193 chr10 135534747 + 32507826 32508793 MER11A 1151 + 6 1148 49162 10 3 4 34 1 100 45 2 0 31 2 1 63 0 11 25 1 3 27 0 1 321 6 9 11 3 4 37 0 4 69 4 5 13 1 59 93 13 12 86 2 1 17 1 0 46 chain 25273 chr10 135534747 + 32511556 32511913 THE1B 368 - 0 361 103359 128 18 16 10 9 16 29 1 0 162 chain 13676 chr10 135534747 + 32511922 32512922 MER6A 605 + 172 498 145684 18 9 10 34 109 110 82 676 0 72 chain 25902 chr10 135534747 + 32514700 32515006 AluY 311 + 2 311 100423 50 0 1 222 0 2 34 chain 41929 chr10 135534747 + 32516499 32517070 MLT2A2 560 - 0 560 66721 140 0 1 150 24 9 55 1 2 5 0 3 12 1 0 183 chain 119469 chr10 135534747 + 32521829 32523222 SVA_B 1603 - 0 1603 31234 379 3 1 260 0 38 56 0 40 12 0 117 579 0 4 43 18 5 21 0 26 22 chain 26748 chr10 135534747 + 32536508 32536864 THE1B 368 + 0 367 97171 44 0 15 113 3 2 26 2 0 92 2 1 74 chain 46591 chr10 135534747 + 32541567 32542116 MER41A 554 - 0 554 61538 80 0 5 469 chain 9863 chr10 135534747 + 32547657 32547803 L1MB2 1706 - 158 300 161271 7 7 0 32 0 1 37 1 3 62 chain 23106 chr10 135534747 + 32567299 32567546 AluYa5 310 - 1 248 115113 247 chain 8468 chr10 135534747 + 32584651 32584782 MER3 215 - 67 204 168472 57 1 0 22 7 15 9 1 0 34 chain 12941 chr10 135534747 + 32589176 32589319 L1PA5 6144 - 2 145 148465 143 chain 23754 chr10 135534747 + 32643671 32644092 MER1A 529 + 97 529 111751 48 13 30 19 28 29 68 3 0 152 51 47 39 chain 37342 chr10 135534747 + 32650660 32651173 MER41A 554 + 0 554 73033 195 0 1 31 0 13 78 10 28 100 7 11 11 8 13 73 chain 23035 chr10 135534747 + 32661667 32661946 AluSq2 311 + 0 278 115472 44 0 1 89 2 0 144 chain 22834 chr10 135534747 + 32681396 32681707 L1MA2 4263 - 169 468 116425 36 7 0 93 2 1 6 1 0 151 3 0 12 chain 5478 chr10 135534747 + 32683508 32683572 U6 107 - 22 86 190228 64 chain 72874 chr10 135534747 + 32688487 32689348 L1PA3long 6157 - 2 816 47083 373 47 0 441 chain 8637 chr10 135534747 + 32696863 32696993 THE1B 368 - 0 128 167558 46 17 16 45 1 0 21 chain 5534 chr10 135534747 + 32747729 32747798 L1MA5 2750 + 1335 1404 189717 69 chain 24652 chr10 135534747 + 32750705 32750989 AluSp 311 - 18 301 106712 161 1 0 122 chain 533523 chr10 135534747 + 32771436 32777539 L1PA4 6152 - 9 6130 3763 841 0 4 864 1 0 4 0 1 458 1 0 554 0 4 369 2 0 1031 0 6 500 0 6 206 0 1 1272 chain 488129 chr10 135534747 + 32783336 32791440 L1PA7 6471 - 12 6465 7436 443 0 1 305 3 0 5 0 3 28 0 5 48 1 0 345 1 0 310 0 1 16 2 0 229 0 2 46 6 10 67 0 3 78 0 1 130 0 1 30 8 0 1249 1 0 395 5 9 58 0 1 82 0 1 7 8 15 250 1 0 256 5 2 253 2007 15 448 10 50 47 1 5 210 13 12 84 14 14 63 0 113 52 5 6 145 22 193 113 4 3 195 chain 124474 chr10 135534747 + 32788530 32789960 SVA_B 1603 - 0 1551 29550 601 0 82 35 1 40 284 3 0 8 2 5 496 chain 136610 chr10 135534747 + 32794136 32795781 SVA_A 1864 - 23 1846 26712 134 0 6 214 1 0 240 12 47 27 11 82 68 3 0 136 15 48 36 0 39 102 3 0 152 0 1 491 chain 2921 chr10 135534747 + 32806028 32806063 MER58A 224 + 49 84 226668 35 chain 20417 chr10 135534747 + 32806477 32806709 L1PA4 6152 + 5922 6151 125846 161 4 1 67 chain 12506 chr10 135534747 + 32814028 32814180 L1PA6 6164 + 6009 6162 150222 26 0 1 126 chain 29522 chr10 135534747 + 32817210 32817914 L1PB1 5432 - 10 506 86558 15 0 2 14 1 0 21 1 0 24 2 0 14 1 0 10 2 4 10 46 33 38 1 0 16 3 2 50 4 2 8 5 1 12 1 0 8 1 0 24 184 0 188 chain 398164 chr10 135534747 + 32836739 32842690 L1PB1 5432 - 8 5315 10167 4 1 0 16 1 0 13 1 0 21 1 0 22 2 0 16 8 5 19 24 12 15 1 0 44 625 4 11 3 2 53 2 0 9 16 11 9 1 0 24 1 0 5 7 6 51 1 0 5 9 10 54 1 0 4 0 1 346 4 0 10 5 6 490 4 5 397 0 4 171 6 11 197 0 1 48 0 1 18 0 7 423 3 1 302 0 1 861 0 1 105 1 2 63 0 1 17 4 13 58 38 16 7 1 0 23 2 0 5 0 1 586 27 29 149 11 10 89 0 8 88 1 0 5 2 1 284 chain 34319 chr10 135534747 + 32836984 32837483 LTR10A 586 - 21 540 77180 47 0 1 227 22 32 22 0 1 94 1 0 18 16 24 20 4 5 28 chain 28217 chr10 135534747 + 32843650 32844142 L1MA3 4352 - 148 633 92243 4 1 0 88 3 0 6 47 25 43 0 4 77 14 28 29 1 0 90 19 18 50 0 1 5 0 2 15 chain 547009 chr10 135534747 + 32847613 32853729 L1PA3long 6157 + 6 6146 1830 261 0 1 258 4 0 339 14 16 983 0 1 381 0 1 15 0 2 55 2 0 52 0 1 20 0 4 194 0 16 1354 0 2 114 0 1 154 8 4 122 0 4 1686 1 0 99 chain 25542 chr10 135534747 + 32856934 32857232 AluSc5 308 - 10 308 102041 298 chain 35847 chr10 135534747 + 32867211 32867689 MER1A 529 - 13 497 75064 35 18 25 332 1 0 92 chain 122897 chr10 135534747 + 32874303 32875771 L1PA7 6471 - 4 1468 30081 6 5 0 151 1 2 109 1 0 62 0 1 360 6 6 60 0 1 88 1 0 618 chain 504466 chr10 135534747 + 32881494 32887546 L1PA5 6144 - 15 6141 6574 130 4 6 6 2 0 253 0 1 357 0 1 1625 0 1 246 0 1 255 0 1 4 0 3 80 0 2 643 0 9 296 0 1 12 0 2 188 0 6 273 0 4 20 5 2 215 0 1 52 1 0 18 1 6 198 0 1 38 10 1 13 0 3 87 0 1 102 0 1 113 0 2 14 0 17 79 3 2 559 7 19 20 1 0 4 4 18 114 chain 70506 chr10 135534747 + 32890463 32891335 LTR12 884 + 0 869 48161 25 1 0 65 25 0 29 0 25 192 1 2 40 2 0 290 1 0 201 chain 327124 chr10 135534747 + 32899356 32903469 L1PA7 6471 - 6 4101 12303 146 6 0 6 1 6 606 2 4 76 1 0 67 0 1 389 0 1 181 10 11 445 0 1 246 0 1 66 0 2 72 10 11 121 8 0 153 17 19 221 2 3 27 0 5 25 0 4 52 1 0 383 0 19 147 16 0 58 0 4 244 16 0 7 7 0 67 23 10 188 chain 527189 chr10 135534747 + 32925167 32931727 L1PA4 6152 - 9 6146 4479 139 0 1 2064 0 1 700 2 0 61 1 0 261 11 4 149 300 0 408 1 34 524 144 0 86 0 1 1004 0 2 389 4 6 52 18 9 242 chain 23270 chr10 135534747 + 32928557 32928833 AluYc3 301 - 14 290 114342 276 chain 11698 chr10 135534747 + 32929804 32929928 L1HS 6032 - 2 126 153483 124 chain 6322 chr10 135534747 + 32944355 32944436 L1MA6 2487 - 492 572 182624 68 1 0 12 chain 115235 chr10 135534747 + 32945647 32947166 THE1C-int 1605 - 10 1605 32705 105 5 13 48 0 7 4 1 0 4 0 1 260 1 2 399 6 0 47 2 3 125 1 2 123 5 12 276 4 61 103 chain 50811 chr10 135534747 + 32949064 32949617 L1PA3long 6157 - 9 562 58428 553 chain 67307 chr10 135534747 + 32949617 32950342 L1PA3long 6157 + 4860 5589 49524 444 0 4 281 chain 216324 chr10 135534747 + 32955307 32957760 L1PA5 6144 - 1 2454 18096 309 0 1 460 0 7 379 0 1 1038 2 1 246 8 0 11 chain 30760 chr10 135534747 + 32959322 32959657 L1PA3long 6157 - 1 336 82941 335 chain 119490 chr10 135534747 + 32964605 32965942 L1PA3long 6157 + 4438 5792 31222 512 0 13 25 0 1 10 0 1 128 0 1 597 0 1 65 chain 33686 chr10 135534747 + 32965942 32966303 L1PA3long 6157 + 5796 6157 78115 361 chain 13609 chr10 135534747 + 32969361 32969540 L1PA6 6164 - 2 194 145940 5 2 0 134 0 15 38 chain 15889 chr10 135534747 + 32974280 32974479 MER107 203 - 0 202 138687 34 10 13 155 chain 15851 chr10 135534747 + 32985913 32986117 MER1A 529 - 72 283 138799 96 0 5 59 12 14 37 chain 74056 chr10 135534747 + 32986139 32987969 L1PA5 6144 + 3 1816 7039 132 29 45 37 0 1 39 0 1 556 13 8 121 0 4 7 25 0 14 0 1 201 9 0 65 1 0 581 chain 522948 chr10 135534747 + 32987992 32994085 L1PA4 6152 - 9 6148 4869 162 2 3 2095 0 39 606 2 0 819 0 5 327 0 1 1025 2 1 6 0 1 31 0 5 82 1 2 344 3 0 5 0 3 211 20 16 350 chain 174942 chr10 135534747 + 32994085 32998408 L1PA5 6144 + 1818 6144 7039 3166 1 2 276 1 2 411 1 0 44 0 1 264 0 1 159 chain 512272 chr10 135534747 + 33003034 33009500 L1PA7 6471 + 3 6459 5944 407 0 2 118 4 8 82 5 6 67 53 51 186 0 1 887 12 11 337 0 5 90 6 5 6 0 1 203 3 4 150 11 12 173 0 12 59 0 4 167 9 6 38 0 4 301 6 10 86 0 1 234 4 3 87 7 2 117 0 1 54 10 9 232 8 19 724 1 0 434 0 1 77 1 5 119 1 0 77 0 2 283 28 5 219 38 8 106 1 0 138 chain 3201 chr10 135534747 + 33011189 33011247 MER76-int 525 - 125 169 220931 7 13 0 13 1 0 24 chain 18945 chr10 135534747 + 33025318 33025536 L1PA3long 6157 - 0 216 130244 5 2 0 211 chain 51945 chr10 135534747 + 33032487 33033078 L1PA5 6144 + 5554 6144 57650 251 0 1 326 3 1 11 chain 503902 chr10 135534747 + 33043597 33049683 L1PA4 6152 + 24 6151 6610 97 5 19 96 1 6 6 5 0 97 1 2 452 19 36 273 3 0 7 0 3 60 48 40 18 0 2 6 2 0 603 0 5 349 0 2 113 1 0 345 0 1 4 1 0 540 1 0 53 0 4 515 0 1 71 0 1 146 8 10 341 0 4 1799 chain 2948 chr10 135534747 + 33049900 33049935 MamRep38 296 + 3 38 226106 35 chain 52385 chr10 135534747 + 33058410 33059017 L1PA7 6471 - 3 608 57367 9 3 0 327 0 1 268 chain 45588 chr10 135534747 + 33064730 33065219 L1PA2 6032 + 5540 6029 62421 489 chain 25674 chr10 135534747 + 33085962 33086575 L1PB1 5432 + 4981 5420 101391 16 0 1 28 1 0 68 158 12 8 1 0 24 1 0 9 28 21 51 1 0 17 1 0 44 1 0 16 26 13 18 2 0 5 1 0 16 2 0 22 1 0 22 1 4 24 chain 377439 chr10 135534747 + 33086631 33091460 HERVL-int 5654 - 838 5654 10833 43 0 6 1861 16 2 613 36 37 259 5 4 188 40 33 47 0 2 31 12 13 237 8 7 29 0 1 155 0 1 509 0 1 32 7 0 359 0 3 280 11 12 51 chain 532621 chr10 135534747 + 33104791 33110887 L1PA4 6152 + 3 6140 3896 122 3 13 1098 1 0 1599 5 29 151 0 1 161 1 0 512 1 0 251 0 1 410 0 4 187 3 0 758 0 5 470 0 1 227 0 1 136 chain 24188 chr10 135534747 + 33114149 33114511 MLT2A1 477 + 0 467 109287 17 0 4 39 0 1 48 0 1 59 4 1 96 0 93 34 14 1 19 3 25 29 chain 237526 chr10 135534747 + 33114521 33118631 HERVL-int 5654 + 0 5654 16907 134 12 301 171 0 1 298 43 47 19 69 2312 551 2 1 439 0 14 6 7 0 165 0 12 29 1040 16 67 0 16 166 1 0 52 7 1 7 0 6 393 8 7 41 4 3 379 chain 20114 chr10 135534747 + 33116488 33116726 L1PA6 6164 + 5921 6159 126785 238 chain 29382 chr10 135534747 + 33118631 33119036 MLT2A1 477 + 0 449 87162 109 5 6 53 5 2 130 1 2 30 7 4 44 0 48 21 chain 110949 chr10 135534747 + 33125761 33127003 L1PA4 6152 + 4899 6142 33947 1139 0 1 103 chain 340337 chr10 135534747 + 33127243 33132005 L1PB1 5432 + 629 5422 11890 22 39 40 44 0 5 26 4 3 4 0 1 70 0 1 532 2 0 5 48 54 81 29 0 17 10 15 22 1 5 268 1 8 477 2 1 169 0 1 342 3 0 15 1 0 6 13 15 342 0 1 143 6 10 348 13 0 14 2 4 86 0 49 117 0 1 60 8 14 229 0 4 32 0 2 10 16 17 244 0 4 20 0 1 365 1 2 106 5 4 6 1 0 25 1 0 4 3 2 12 18 12 50 2 1 17 0 1 39 6 5 15 1 0 6 15 7 15 2 0 8 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 38457 chr10 135534747 + 33144167 33144654 MER1A 529 - 0 488 71507 62 8 10 6 1 0 410 chain 322881 chr10 135534747 + 33147642 33151498 L1PA7 6471 + 2599 6469 12488 105 0 4 162 1 0 4 1 2 600 6 10 30 0 1 10 1 0 53 0 2 1083 0 4 350 15 4 452 0 2 146 1 5 761 0 8 57 3 0 15 chain 435456 chr10 135534747 + 33157511 33162500 L1PA4 6152 - 14 5041 9182 830 0 4 131 0 1 248 32 1 158 1 2 222 3 0 181 0 2 402 0 2 268 5 0 979 5 0 224 0 56 68 0 12 603 4 5 314 0 3 311 chain 31870 chr10 135534747 + 33163424 33164471 L1PB3 3668 - 55 1219 81064 12 9 6 12 2 1 12 10 8 33 3 1 27 2 0 19 196 664 151 1 0 16 0 1 100 0 1 65 342 0 35 chain 93778 chr10 135534747 + 33183383 33184411 LTR5A 1029 + 0 1029 38414 150 1 0 615 0 2 262 chain 10306 chr10 135534747 + 33196651 33196886 MER30 238 - 0 238 159110 48 3 0 23 0 6 23 2 0 8 6 21 10 21 12 27 1 0 13 36 33 14 chain 520126 chr10 135534747 + 33201104 33207277 L1PA5 6144 + 0 6139 5142 118 0 14 232 22 1 110 12 13 209 1 2 108 17 0 11 0 17 61 1 0 165 3 4 100 13 4 239 1 6 19 2 0 451 0 2 1372 0 2 548 0 3 16 5 6 324 38 9 132 1 0 1183 1 0 658 chain 62215 chr10 135534747 + 33267234 33267949 L1PA6 6164 - 10 726 51791 60 0 1 655 chain 2967 chr10 135534747 + 33278031 33278072 L1MB3 1562 - 245 285 225714 19 1 0 21 chain 14304 chr10 135534747 + 33300284 33300649 L1PA11 4918 + 4314 4629 143551 17 2 1 60 7 8 7 2 0 67 2 0 14 1 0 12 0 1 7 20 0 9 35 26 11 1 0 13 2 0 11 8 2 5 1 0 9 1 0 4 19 13 18 chain 116498 chr10 135534747 + 33302037 33303452 LTR12C 1709 + 0 1709 32281 78 1 2 229 0 1 4 1 0 385 0 159 253 1 0 5 3 1 5 0 2 100 0 4 248 0 131 102 chain 52589 chr10 135534747 + 33308760 33309400 L1PA8 5853 - 0 633 57241 93 1 0 19 3 2 52 2 0 8 1 0 71 3 1 45 1 0 227 0 1 114 chain 128671 chr10 135534747 + 33337970 33339616 LTR12C 1709 + 0 1709 28401 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 33 0 3 199 102 0 106 0 2 138 chain 9046 chr10 135534747 + 33347362 33347481 MER41B 635 + 511 635 165341 36 0 5 68 1 0 5 0 1 9 chain 15647 chr10 135534747 + 33349021 33349272 L1PB2 3958 - 120 373 139444 16 1 4 36 0 1 6 1 0 19 15 13 47 0 3 11 2 1 64 1 0 32 chain 3102 chr10 135534747 + 33350449 33350482 MLT1D 503 + 467 500 222895 33 chain 6917 chr10 135534747 + 33352231 33352371 L1MA3 4352 + 4218 4345 178060 17 4 0 24 2 0 23 1 0 7 1 0 25 22 17 14 chain 14131 chr10 135534747 + 33381032 33381249 MER6A 605 + 358 576 144103 31 1 0 48 1 0 5 14 16 46 0 1 71 chain 4169 chr10 135534747 + 33387464 33387562 MADE1 96 - 0 96 204983 35 41 39 22 chain 4967 chr10 135534747 + 33420157 33420216 MER1B 344 - 0 59 195511 59 chain 45398 chr10 135534747 + 33421917 33422463 L1PA7 6471 - 15 563 62598 88 1 3 457 chain 25647 chr10 135534747 + 33433539 33433842 AluYk4 311 + 0 300 101510 132 3 0 168 chain 2748 chr10 135534747 + 33441991 33442045 MER63A 208 - 105 157 229519 16 14 12 24 chain 3761 chr10 135534747 + 33447178 33447219 L1P5 443 + 290 331 209584 41 chain 5911 chr10 135534747 + 33447219 33447468 L1PB1 5432 + 5066 5280 134776 37 40 14 20 1 0 9 1 0 10 8 5 6 2 0 53 2 1 15 1 0 44 chain 26362 chr10 135534747 + 33447476 33447780 AluY 311 + 0 301 98564 16 4 0 116 0 1 168 chain 3822 chr10 135534747 + 33447787 33447948 L1PB1 5432 + 5280 5423 134776 16 1 0 4 20 8 18 3 1 5 1 0 14 2 0 20 3 4 21 2 1 12 0 2 12 2 0 5 chain 29126 chr10 135534747 + 33460779 33461083 AluYa5 310 - 6 310 88434 304 chain 26635 chr10 135534747 + 33492650 33492929 AluYb8 318 - 1 280 97532 279 chain 26896 chr10 135534747 + 33555571 33556200 MSTA 426 + 7 405 96639 21 0 1 105 18 16 38 233 2 15 1 0 29 1 0 4 4 6 75 0 1 85 chain 15751 chr10 135534747 + 33555759 33555935 AluY 311 + 81 258 139108 51 0 1 125 chain 22218 chr10 135534747 + 33564228 33564498 AluSc8 310 + 14 287 119272 118 0 3 152 chain 33812 chr10 135534747 + 33589477 33589941 MER4A1 472 + 0 472 77923 220 0 1 5 0 20 18 22 0 116 16 25 67 chain 6966 chr10 135534747 + 33646471 33646555 THE1B 368 + 222 306 177706 84 chain 24315 chr10 135534747 + 33648382 33648741 THE1B 368 - 0 368 108579 56 7 6 63 35 45 29 1 0 118 0 1 50 chain 18342 chr10 135534747 + 33673150 33673513 THE1B 368 - 0 368 131950 56 7 6 66 77 82 21 28 29 108 chain 125991 chr10 135534747 + 33756778 33758330 LTR12C 1709 + 0 1709 29105 460 0 1 329 48 0 20 0 200 101 1 0 5 3 1 13 0 3 91 0 4 481 chain 3968 chr10 135534747 + 33757567 33757615 LTR12C 1709 + 1109 1156 140271 2 1 0 45 chain 105927 chr10 135534747 + 33768663 33769957 LTR12C 1709 - 0 1709 35276 88 0 131 262 0 4 106 1 0 8 1 0 18 0 160 84 0 118 256 4 1 6 0 3 174 0 4 286 chain 567018 chr10 135534747 + 33799773 33805804 L1HS 6032 - 0 6031 86 6031 chain 9484 chr10 135534747 + 33822121 33822232 LTR7Y 441 + 284 395 163142 111 chain 3253 chr10 135534747 + 33876636 33876672 L1ME1 1623 + 611 647 219940 36 chain 27081 chr10 135534747 + 33878088 33878522 LTR19A 502 - 7 502 95998 20 17 18 18 11 9 196 1 0 13 7 44 17 0 27 85 15 14 34 chain 65077 chr10 135534747 + 33880507 33881287 LTR17 781 - 0 781 50538 221 0 1 232 1 0 254 0 1 72 chain 49087 chr10 135534747 + 33889641 33890232 LTR10C 591 + 0 591 59680 34 2 0 206 0 3 7 3 0 216 1 0 42 0 3 80 chain 39648 chr10 135534747 + 33897658 33898206 MER41A 554 + 0 554 69826 79 1 0 4 5 6 210 0 7 23 29 28 197 chain 56539 chr10 135534747 + 33904127 33904895 MER4E1 777 - 7 777 54831 210 23 22 107 1 3 194 4 5 49 1 0 160 1 2 18 chain 13191 chr10 135534747 + 33918300 33918493 MER30 238 - 0 200 147508 39 3 0 72 11 21 68 chain 10195 chr10 135534747 + 33930255 33930390 MER2 342 - 127 261 159649 105 1 0 29 chain 14255 chr10 135534747 + 33933990 33934192 MER30 238 + 0 228 143699 17 0 8 68 0 3 13 8 23 96 chain 3492 chr10 135534747 + 33947016 33947090 MER58A 224 - 140 215 215495 36 25 26 13 chain 10590 chr10 135534747 + 33959687 33959851 MER2 342 - 22 189 157869 21 3 4 40 9 10 49 0 1 42 chain 520120 chr10 135534747 + 33978192 33985667 L1PA7 6471 - 1 6467 5144 333 0 1 244 1067 0 192 0 2 81 1 0 335 4 11 75 1 0 139 0 5 38 2 1 220 1 2 93 23 25 65 0 2 240 0 2 188 10 6 26 0 1 561 0 4 42 0 1 5 3 1 429 3 7 225 0 1 233 2 0 183 0 3 9 0 11 263 0 1 404 0 1 359 0 3 118 9 10 38 0 4 13 0 4 391 0 6 409 7 8 284 0 1 107 chain 80670 chr10 135534747 + 33978775 33979836 MER11A 1151 + 0 1151 43316 63 1 100 122 18 14 139 5 6 87 0 7 267 2 1 56 3 0 105 1 2 86 9 0 30 7 6 60 chain 5395 chr10 135534747 + 34009127 34009191 MER51A 677 + 196 260 191038 64 chain 26969 chr10 135534747 + 34012740 34013118 THE1C 375 - 0 375 96373 26 1 0 164 5 6 26 20 0 9 0 17 127 chain 4370 chr10 135534747 + 34030257 34030309 L1MA8 2339 + 1872 1924 202310 52 chain 18549 chr10 135534747 + 34033853 34034207 L1PB1 5432 - 9 329 131358 9 1 0 10 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 14 1 16 1 0 42 2 1 16 2 1 47 27 21 5 1 0 9 1 0 24 1 0 11 chain 13734 chr10 135534747 + 34051100 34051281 MER30 238 + 46 238 145489 50 0 2 11 4 13 116 chain 23167 chr10 135534747 + 34071999 34072325 LTR45B 484 - 132 465 114828 188 3 0 5 2 5 59 12 19 57 chain 2998 chr10 135534747 + 34093488 34093521 MADE1 96 - 62 95 225059 33 chain 22202 chr10 135534747 + 34102118 34102480 THE1B 368 - 0 368 119340 30 30 31 65 1 0 12 18 21 8 0 3 25 6 5 60 0 1 107 chain 48381 chr10 135534747 + 34115989 34119394 L1PA8 5853 + 5210 5853 60195 142 2757 0 212 1 0 44 2 0 71 1 0 14 4 3 64 1 0 75 2 3 15 chain 32594 chr10 135534747 + 34116166 34116628 L1PA8 5853 + 5389 5847 79860 5 3 1 169 1 0 32 1 0 14 2 0 65 14 16 7 0 2 42 1 0 18 1 0 87 chain 124396 chr10 135534747 + 34132728 34134309 THE1B-int 1605 - 0 1605 29575 261 1 2 91 14 16 240 0 1 335 0 1 95 1 0 40 8 5 63 0 25 121 0 1 241 3 0 67 chain 515548 chr10 135534747 + 34136460 34142678 L1PA4 6152 - 9 6022 5614 62 9 0 593 307 0 193 0 1 942 0 4 358 0 1 975 0 1 335 4 5 449 0 83 111 1 2 607 1 6 1251 8 22 12 chain 5738 chr10 135534747 + 34146497 34146583 MER30 238 + 0 103 187752 23 6 23 57 chain 12024 chr10 135534747 + 34180789 34180937 THE1B 368 - 218 366 152104 148 chain 13140 chr10 135534747 + 34198451 34198640 L1PA16 3655 - 51 236 147684 8 8 0 18 3 0 76 0 7 76 chain 3153 chr10 135534747 + 34211254 34211289 L1MA2 4263 + 4023 4058 221876 35 chain 47797 chr10 135534747 + 34220919 34221472 MER41A 554 + 0 554 60624 466 0 1 87 chain 6702 chr10 135534747 + 34222137 34222215 L1PB1 5432 - 666 746 179669 61 0 2 17 chain 24811 chr10 135534747 + 34222243 34222567 L1PB1 5432 + 4779 5103 105832 26 12 12 286 chain 16812 chr10 135534747 + 34230657 34230875 MER30 238 - 0 238 136086 115 8 11 79 0 17 16 chain 40098 chr10 135534747 + 34234382 34234882 MER9a1 513 - 0 513 69187 90 0 1 155 1 23 152 17 7 85 chain 24141 chr10 135534747 + 34235680 34236043 THE1B 368 - 0 368 109517 124 21 20 10 0 1 4 23 29 11 1 0 169 chain 50740 chr10 135534747 + 34245156 34245998 L1PB1 5432 - 37 840 58471 4 1 0 9 3 0 5 0 2 5 1 0 24 2 0 14 8 5 16 9 0 11 2 0 4 1 0 16 1 0 43 1 0 16 2 1 53 26 20 9 1 0 24 3 0 9 1 2 50 18 19 216 23 29 168 14 0 29 chain 14582 chr10 135534747 + 34247581 34247811 MER1A 529 - 1 233 142653 23 0 31 11 34 5 162 chain 5939 chr10 135534747 + 34258071 34258317 MLT1J 494 + 232 491 185791 52 8 0 8 136 158 5 1 0 36 chain 36942 chr10 135534747 + 34277746 34278234 L1PA8 5853 - 0 500 73598 93 1 0 16 1 0 54 14 12 50 0 11 8 2 0 41 3 4 140 0 6 65 chain 11267 chr10 135534747 + 34287828 34287955 MER50 708 - 22 149 155165 127 chain 111110 chr10 135534747 + 34294074 34295485 L1PA7 6471 + 5122 6459 33906 320 0 1 178 1 0 485 54 0 8 0 8 17 16 5 75 17 0 240 chain 12611 chr10 135534747 + 34306746 34306965 MER30 238 - 1 238 149806 70 6 0 7 5 11 28 19 29 61 6 14 17 chain 9320 chr10 135534747 + 34324785 34324900 LTR12C 1709 + 773 928 125835 60 0 40 55 chain 28489 chr10 135534747 + 34324900 34325237 LTR12C 1709 + 650 986 91232 187 1 0 149 chain 44340 chr10 135534747 + 34342531 34343051 L1PA6 6164 - 20 540 63773 520 chain 105391 chr10 135534747 + 34344299 34345585 LTR12C 1709 + 0 1709 35400 338 0 43 83 2 0 5 1 0 181 0 278 184 1 0 111 1 5 169 0 102 210 chain 16234 chr10 135534747 + 34347465 34347688 MER30 238 + 0 238 137663 100 1 0 6 4 23 63 3 0 46 chain 55007 chr10 135534747 + 34351986 34352622 L1PA7 6471 + 5832 6470 55701 624 0 2 12 chain 470343 chr10 135534747 + 34356420 34362533 L1PA7 6471 + 5 6468 8021 126 18 24 13 109 108 45 51 248 152 5 15 14 6 8 7 2 0 28 1 76 177 0 21 1063 0 3 381 0 1 105 12 13 187 0 1 419 6 7 237 1 2 5 1 0 6 1 0 79 0 1 160 1 2 97 1 0 83 1 2 743 0 4 236 4 27 145 1 0 29 0 1 155 0 1 111 0 1 225 0 4 17 6 5 106 0 4 58 1 0 337 0 1 176 5 6 19 0 1 128 4 0 7 chain 12226 chr10 135534747 + 34372201 34372413 L1PA8 5853 + 5646 5853 151313 32 18 15 31 0 7 6 16 8 15 3 2 91 chain 6173 chr10 135534747 + 34490912 34491002 HY4 93 - 3 93 183782 9 1 0 17 3 4 60 chain 41812 chr10 135534747 + 34515888 34517017 L1PA15 4387 + 3609 4326 66874 23 1 2 51 0 5 123 9 12 8 4 0 57 2 0 27 4 0 16 1 0 28 4 10 33 312 0 84 1 0 16 1 0 18 4 8 31 94 0 24 1 0 22 4 0 6 6 5 23 33 29 44 3 1 11 chain 64857 chr10 135534747 + 34557130 34557865 L1PA5 6144 + 5407 6143 50629 277 0 1 304 0 7 12 7 0 135 chain 6568 chr10 135534747 + 34622588 34622730 MER58A 224 + 60 219 180717 50 47 64 45 chain 118208 chr10 135534747 + 34641285 34642637 SVA_B 1603 + 0 1580 31727 9 0 33 591 0 40 170 0 40 43 0 78 21 4 41 514 chain 7519 chr10 135534747 + 34658287 34658371 MER30 238 + 147 231 174048 84 chain 65938 chr10 135534747 + 34715720 34716784 MER11B 1079 + 0 1079 50129 358 0 5 72 0 11 11 18 17 22 31 19 8 0 1 12 7 8 32 18 19 99 5 12 12 1 0 16 99 94 51 0 1 78 0 8 85 1 0 28 chain 27702 chr10 135534747 + 34732309 34732676 THE1B 368 - 0 363 94035 79 3 0 121 1 0 26 0 4 31 5 1 101 chain 13433 chr10 135534747 + 34738379 34738528 L1PA4 6152 + 5991 6140 146561 149 chain 3935 chr10 135534747 + 34822150 34822203 L1PA16 3655 + 3537 3587 208343 42 3 0 8 chain 21360 chr10 135534747 + 34912639 34912923 AluSc8 310 + 13 300 122653 33 8 7 79 0 3 104 2 3 58 chain 2956 chr10 135534747 + 34943297 34943328 MIR 256 - 152 183 225944 31 chain 33778 chr10 135534747 + 34951083 34951518 L1MA3 4352 + 3479 3915 77971 198 1 2 236 chain 30476 chr10 135534747 + 34957934 34958345 L1PB4 2604 + 2134 2550 83479 229 1 0 17 5 3 46 0 2 54 1 7 58 chain 27934 chr10 135534747 + 34969624 34969925 L1PA2 6032 + 5731 6032 93226 301 chain 115856 chr10 135534747 + 34980048 34982384 L1PA15 4387 + 2698 4352 32512 438 2 0 32 20 23 190 4 0 133 309 0 298 2 0 43 305 5 27 2 0 40 0 1 4 1 0 66 48 0 102 35 33 50 1 0 23 4 0 10 5 4 39 17 14 41 3 1 15 5 0 22 chain 36367 chr10 135534747 + 35057067 35057586 MER4A1 472 - 0 472 74407 197 49 7 70 7 0 153 0 3 17 1 0 25 chain 13623 chr10 135534747 + 35127409 35127584 MLT1B 390 - 163 343 145886 36 0 2 15 0 3 124 chain 10770 chr10 135534747 + 35137751 35137872 Tigger1 2417 - 832 953 157111 121 chain 23533 chr10 135534747 + 35164511 35164780 AluY 311 + 4 274 112940 128 0 1 141 chain 38286 chr10 135534747 + 35178166 35178669 LTR3B_ 500 - 0 500 71732 70 8 0 18 4 6 29 0 5 69 2 0 141 5 6 78 1 0 78 chain 2729 chr10 135534747 + 35187125 35187154 L1MEa 740 + 454 483 229745 29 chain 17994 chr10 135534747 + 35191424 35191657 AluSp 311 - 13 249 132874 17 1 3 136 1 2 78 chain 23014 chr10 135534747 + 35210833 35211112 AluSp 311 + 12 295 115560 52 0 2 214 0 2 13 chain 25393 chr10 135534747 + 35231563 35231866 AluSp 311 - 8 311 102720 303 chain 11158 chr10 135534747 + 35232241 35232457 MER4D1 891 - 4 219 155605 73 0 2 5 44 42 13 4 6 14 3 0 60 chain 37277 chr10 135534747 + 35235044 35235845 MER41B 635 - 113 608 73120 10 0 1 43 0 3 6 12 8 86 0 1 7 1 0 156 0 3 62 310 0 9 0 1 99 chain 4003 chr10 135534747 + 35237023 35237069 MLT1C 463 + 59 105 207351 46 chain 46561 chr10 135534747 + 35240228 35241237 MER41B 635 + 0 635 61550 69 9 5 44 0 3 6 1 2 29 0 1 119 1 0 170 392 18 169 chain 337943 chr10 135534747 + 35259251 35263287 HERVE-int 4064 + 0 4064 11955 159 0 6 540 1 3 102 0 1 114 22 7 601 26 1 819 0 4 13 5 7 135 2 0 37 0 48 15 1 3 35 1 2 56 0 3 696 2 0 38 0 3 616 chain 11593 chr10 135534747 + 35264389 35264548 LTR2C 499 + 339 499 153923 88 8 9 63 chain 119773 chr10 135534747 + 35264856 35266229 SVA_C 1631 + 0 1631 31129 22 0 19 7 13 0 795 0 256 515 4 0 17 chain 29450 chr10 135534747 + 35271293 35271602 AluYa5 310 - 1 310 86848 309 chain 14388 chr10 135534747 + 35315764 35315920 L1PA3long 6157 - 0 156 143237 156 chain 24678 chr10 135534747 + 35340259 35340540 AluYf4 310 + 0 282 106567 205 4 5 72 chain 25267 chr10 135534747 + 35341545 35341846 AluY 311 + 4 306 103379 122 0 1 179 chain 28842 chr10 135534747 + 35392240 35392550 AluYg6 310 - 0 310 89707 310 chain 4386 chr10 135534747 + 35395566 35395615 MLT1A0 366 + 304 353 202133 49 chain 3670 chr10 135534747 + 35424370 35424416 U7 62 + 0 48 212384 16 0 2 30 chain 25337 chr10 135534747 + 35516681 35516965 AluYc 301 + 0 286 103040 120 0 2 164 chain 4546 chr10 135534747 + 35520258 35520310 U6 107 - 43 95 200254 52 chain 25059 chr10 135534747 + 35522815 35523123 AluYk4 311 + 0 298 104515 132 1 0 153 5 0 7 4 0 6 chain 25363 chr10 135534747 + 35536538 35536832 AluY 311 + 16 311 102865 116 0 1 178 chain 127965 chr10 135534747 + 35584837 35587074 L1PREC2 3366 + 953 2867 28576 53 3 4 42 2 1 22 0 2 13 6 0 30 0 4 121 62 65 28 0 1 7 311 4 65 0 1 4 0 23 241 0 1 6 0 1 62 0 1 16 0 1 133 56 0 63 8 10 19 0 1 172 0 11 149 25 29 228 1 0 136 20 18 11 2 0 53 1 0 45 1 0 4 3 0 13 chain 25802 chr10 135534747 + 35592433 35592728 AluSp 311 + 10 305 100860 295 chain 28671 chr10 135534747 + 35593226 35593537 AluYa5 310 - 0 310 90447 184 1 0 126 chain 7596 chr10 135534747 + 35593626 35593768 MER20 218 - 48 217 173571 75 17 22 18 1 22 16 1 2 14 chain 65106 chr10 135534747 + 35633515 35634240 L1PA4 6152 - 11 737 50523 594 0 1 131 chain 3343 chr10 135534747 + 35651648 35651687 SVA_F 1814 - 1401 1440 218182 39 chain 3216 chr10 135534747 + 35652002 35652074 SVA_F 1814 - 1155 1420 220640 29 22 215 21 chain 43646 chr10 135534747 + 35679993 35680566 LTR10A 586 - 13 586 64635 64 8 6 220 1 2 70 8 9 202 chain 27132 chr10 135534747 + 35690545 35690945 LTR7B 505 - 13 504 95823 38 14 13 26 0 13 40 1 0 82 8 10 14 1 0 6 0 25 12 0 38 10 1 7 40 0 10 107 chain 264632 chr10 135534747 + 35692752 35697175 HERVH-int 3825 - 0 3780 15459 677 166 9 124 12 11 202 11 0 110 2 0 348 1 2 340 0 2 15 0 35 170 0 1 176 747 1 172 9 0 6 1 0 195 15 0 8 2 0 426 3 8 7 2 0 15 0 2 6 59 314 23 22 21 66 1 0 257 0 1 8 7 10 12 chain 14354 chr10 135534747 + 35693429 35693595 HERVH-int 3825 - 1599 1765 142271 166 chain 58427 chr10 135534747 + 35695179 35695840 SVA_D 2077 - 21 778 53731 618 2 0 11 3 101 27 chain 28629 chr10 135534747 + 35697236 35697680 LTR7B 505 - 15 505 90612 36 14 13 76 1 0 54 3 8 21 0 2 28 34 27 11 1 39 60 0 10 105 chain 26906 chr10 135534747 + 35713143 35713453 AluSp 311 - 1 311 96604 310 chain 29330 chr10 135534747 + 35718984 35719289 AluYa5 310 + 1 306 87394 305 chain 4379 chr10 135534747 + 35749318 35749366 MER30 238 - 0 48 202204 48 chain 538477 chr10 135534747 + 35762712 35768696 L1PA3long 6157 + 0 6157 3073 152 0 1 211 0 1 66 1 0 337 8 136 497 0 9 980 0 4 165 0 1 130 1 0 501 1 0 2015 0 28 71 0 6 704 2 0 142 chain 2811 chr10 135534747 + 35810247 35810313 LTR42 492 + 4 73 228599 17 4 5 15 10 12 20 chain 19701 chr10 135534747 + 35822952 35823239 AluSz 310 - 13 300 128094 77 6 0 6 4 10 78 3 0 14 2 1 29 0 4 68 chain 35026 chr10 135534747 + 35823998 35824416 LTR3 431 - 9 427 76152 418 chain 112501 chr10 135534747 + 35825312 35826841 THE1A-int 1579 + 0 1579 33536 494 0 1 43 6 17 81 47 50 174 0 10 71 1 0 267 13 26 178 1 0 4 0 1 80 12 25 40 1 0 4 0 1 12 chain 3500 chr10 135534747 + 35923335 35923396 MER5A1 166 - 37 105 215361 36 8 15 17 chain 3042 chr10 135534747 + 35955888 35955947 MIR 256 + 113 172 224153 25 1 0 7 9 10 17 chain 103812 chr10 135534747 + 35966834 35967972 L1PA3long 6157 - 923 2061 35767 1138 chain 83706 chr10 135534747 + 35967972 35969228 L1PA3long 6157 + 5222 6157 41912 263 318 0 663 3 0 9 chain 29142 chr10 135534747 + 35968245 35968553 AluYb8 318 + 0 308 88355 308 chain 39810 chr10 135534747 + 35989341 35989978 LTR9B 643 + 5 643 69617 180 0 1 12 53 52 35 1 0 140 11 12 55 11 15 8 4 0 71 13 14 43 chain 13463 chr10 135534747 + 35999043 35999312 THE1B 368 - 92 368 146473 32 12 20 10 0 4 10 1 0 6 16 9 7 0 4 5 2 0 34 32 33 102 chain 5627 chr10 135534747 + 36009022 36009094 MER20 218 - 123 195 188800 4 0 1 9 1 0 58 chain 4918 chr10 135534747 + 36099751 36099808 MER3 215 - 142 199 196071 57 chain 29190 chr10 135534747 + 36101200 36101576 THE1C 375 + 0 375 88103 179 0 2 6 2 0 162 1 0 26 chain 3233 chr10 135534747 + 36104300 36104351 MADE1 96 - 5 72 220369 32 1 17 18 chain 44472 chr10 135534747 + 36104351 36104846 L1PA5 6144 - 1710 2206 63043 244 0 1 251 chain 151325 chr10 135534747 + 36104846 36106546 L1PA5 6144 + 4430 6132 24427 433 0 2 309 1 0 638 1 2 318 chain 544421 chr10 135534747 + 36147598 36153620 L1PA3long 6157 + 0 6157 2154 152 0 1 628 0 128 258 1 4 1198 0 1 851 0 2 2934 chain 55044 chr10 135534747 + 36155097 36155728 L1PA5 6144 + 5513 6144 55680 631 chain 9502 chr10 135534747 + 36156622 36156744 MSTA 426 + 0 123 163063 28 0 1 94 chain 25402 chr10 135534747 + 36162463 36162826 THE1B 368 + 0 368 102674 77 5 6 86 1 0 29 0 3 13 7 11 5 1 0 9 2 1 128 chain 33767 chr10 135534747 + 36167604 36168236 L1PB1 5432 + 4853 5427 77988 153 1 2 95 39 11 20 2 1 11 1 0 10 23 18 46 3 2 9 6 5 45 1 0 12 29 18 16 2 0 5 1 0 14 2 0 24 1 0 22 1 0 5 8 7 18 2 0 5 chain 32285 chr10 135534747 + 36188724 36189304 L1MA3 4352 - 0 552 80389 20 8 4 14 1 0 26 1 0 5 2 1 23 2 0 24 4 0 40 1 0 8 1 2 11 1 4 33 65 44 41 1 5 17 1 0 230 chain 8282 chr10 135534747 + 36219297 36219538 L1PA11 4918 - 289 497 169503 18 47 33 11 2 0 13 1 0 13 50 37 16 1 0 14 2 0 53 chain 2652 chr10 135534747 + 36234095 36234158 MER20 218 - 18 82 230992 15 15 19 6 3 0 24 chain 59538 chr10 135534747 + 36255082 36255753 L1PA4 6152 + 5472 6143 53082 671 chain 5625 chr10 135534747 + 36255877 36255954 L1MCa 1829 + 1607 1679 188828 16 2 0 14 3 0 42 chain 5326 chr10 135534747 + 36258848 36258913 MLT1C 463 + 351 416 191765 65 chain 29166 chr10 135534747 + 36270480 36270877 L1PA8 5853 - 0 390 88219 93 1 0 19 2 1 52 8 6 74 3 1 43 1 0 101 chain 26865 chr10 135534747 + 36294200 36294718 L1PB1 5432 + 4959 5424 96759 144 1 2 9 21 0 24 26 20 9 2 0 52 1 0 12 6 5 44 2 1 15 3 0 15 10 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 498965 chr10 135534747 + 36297042 36302656 L1PA4 6152 - 1 6141 6897 149 0 1 188 0 1 120 3 1 1061 0 1 1069 0 1 401 1 0 2535 0 525 87 chain 12806 chr10 135534747 + 36318538 36318694 L1PA5 6144 + 5970 6135 149030 27 1 0 70 0 10 58 chain 6638 chr10 135534747 + 36324524 36324766 L1PA11 4918 - 289 511 180181 18 121 103 20 1 0 10 9 8 63 chain 18134 chr10 135534747 + 36346935 36347294 THE1B 368 - 0 368 132509 39 24 23 66 7 16 10 39 37 35 7 11 14 5 6 25 2 0 86 chain 73841 chr10 135534747 + 36350583 36351392 L1PA3long 6157 - 0 808 46597 804 1 0 4 chain 334824 chr10 135534747 + 36367117 36371685 L1PA11 4918 - 340 4910 12031 11 3 1 12 1 0 15 73 71 74 8 7 25 3 0 30 2 1 116 0 1 355 12 13 179 2 1 120 0 1 831 1 2 209 3 4 240 0 4 14 16 14 18 0 1 5 3 1 23 1 0 360 5 3 76 0 1 126 6 8 123 0 6 59 0 1 24 0 1 167 0 1 367 9 10 47 0 3 165 4 12 145 2 0 240 0 1 17 7 1 7 0 3 27 1 0 50 2 0 13 9 8 22 4 1 42 2 0 28 1 0 6 chain 22888 chr10 135534747 + 36392108 36392367 L1PA3long 6157 + 5898 6157 116152 259 chain 14497 chr10 135534747 + 36396214 36396398 L1PB4 2604 - 34 218 142897 184 chain 4674 chr10 135534747 + 36405179 36405240 MER53 195 + 5 66 198817 61 chain 14911 chr10 135534747 + 36407985 36408184 MER2 342 + 82 277 141597 36 4 0 159 chain 29430 chr10 135534747 + 36411881 36412187 AluYa5 310 - 4 310 86937 306 chain 128635 chr10 135534747 + 36412193 36414088 L1PB1 5432 - 106 1927 28412 18 17 12 16 1 0 44 1 0 13 5 4 51 22 26 28 0 16 165 14 9 36 0 1 48 0 1 13 0 1 15 2 0 177 4 0 11 0 6 9 1 0 5 81 3 382 5 6 224 1 0 259 2 0 92 0 1 85 4 0 44 chain 144360 chr10 135534747 + 36426377 36428567 L1MA1 4479 - 289 2488 25418 18 8 0 7 27 23 35 2 0 29 1 0 126 9 5 21 0 1 63 1 0 64 0 1 44 1 0 4 17 15 20 1 0 22 5 7 130 5 36 124 9 7 6 1 0 61 0 1 57 8 5 7 1 0 31 0 1 6 0 2 31 0 1 23 8 0 171 2 0 27 1 0 86 1 0 37 0 1 30 1 0 29 6 4 103 1 0 20 4 5 41 1 0 99 12 24 167 6 10 116 8 6 14 5 0 80 9 0 9 0 12 6 1 4 64 chain 234436 chr10 135534747 + 36450111 36452795 L1PA4 6152 + 3468 6141 17066 840 13 1 458 12 10 512 5 8 4 0 1 389 3 1 125 0 1 323 chain 25477 chr10 135534747 + 36463855 36464207 THE1A 353 - 0 348 102327 75 1 0 50 1 0 13 25 24 83 1 0 103 chain 121953 chr10 135534747 + 36484784 36486728 L1PA7 6471 + 4973 6457 30396 197 4 0 127 4 0 293 464 10 21 1 0 80 1 2 4 1 0 627 0 1 9 5 7 106 chain 35706 chr10 135534747 + 36485409 36485865 LTR2 463 + 0 463 75263 61 0 3 65 8 11 191 0 1 131 chain 29253 chr10 135534747 + 36521465 36521840 THE1C 375 - 0 375 87773 194 0 2 54 3 0 72 0 1 52 chain 7782 chr10 135534747 + 36530999 36531127 L1PB4 2604 + 113 239 172405 53 22 20 53 chain 24161 chr10 135534747 + 36548975 36549408 L1PA15 4387 + 3958 4366 109422 94 2 0 52 1 0 21 18 17 38 9 8 20 4 0 9 1 0 48 8 5 41 29 18 26 1 0 11 chain 12318 chr10 135534747 + 36563600 36563784 L1P3b 214 + 0 175 150945 26 10 5 126 9 5 13 chain 147514 chr10 135534747 + 36563964 36565788 L1PA8A 6298 + 4456 6291 24959 64 1 2 303 7 5 53 1 2 64 0 1 4 1 0 377 0 1 157 8 11 70 0 2 5 1 0 284 0 1 14 0 6 119 1 0 290 chain 8131 chr10 135534747 + 36574710 36574968 L1MA8 2339 - 143 368 170322 32 3 0 29 122 93 34 2 1 36 chain 68229 chr10 135534747 + 36580601 36581533 L1MA3 4352 - 3334 4256 49146 6 0 1 50 0 2 84 1 0 7 3 0 88 8 6 348 2 0 5 0 2 114 1 0 131 5 0 21 1 0 57 chain 44555 chr10 135534747 + 36583664 36584154 L1PA3long 6157 - 0 490 63518 490 chain 20797 chr10 135534747 + 36645911 36646194 AluSx1 309 + 15 294 124614 106 27 23 150 chain 95481 chr10 135534747 + 36660107 36661197 L1PA5 6144 - 0 1119 37960 55 0 4 194 0 1 87 0 23 85 0 1 669 chain 25892 chr10 135534747 + 36671173 36671454 AluYf4 310 - 29 310 100476 281 chain 27807 chr10 135534747 + 36685130 36685420 AluYd8 298 + 0 290 93673 290 chain 459811 chr10 135534747 + 36689332 36694500 L1PA3long 6157 + 396 6142 8406 686 0 571 208 5 4 26 20 26 792 0 5 174 0 1 940 0 1 527 0 4 344 5 4 850 9 1 582 chain 11318 chr10 135534747 + 36697370 36697541 Tigger3c 601 + 332 513 155006 20 0 10 41 1 6 28 8 3 73 chain 3261 chr10 135534747 + 36716502 36716540 MER20B 722 + 327 365 219774 38 chain 30344 chr10 135534747 + 36726898 36727216 AluYb8 318 - 0 318 83796 318 chain 25962 chr10 135534747 + 36731523 36731816 AluYf4 310 + 0 292 100162 279 1 0 13 chain 4154 chr10 135534747 + 36733054 36733103 MSTA-int 1630 + 0 49 205198 49 chain 28624 chr10 135534747 + 36733867 36734328 MER4A1 472 - 0 472 90636 18 0 2 47 4 6 75 0 1 87 50 45 144 3 10 12 6 10 15 chain 43193 chr10 135534747 + 36746161 36746673 MER9a3 513 + 0 513 65181 13 0 1 242 5 4 207 0 1 45 chain 28025 chr10 135534747 + 36752478 36752942 MER1A 529 + 16 524 92911 9 0 40 15 56 55 308 32 37 44 chain 7973 chr10 135534747 + 36762162 36762270 AluSp 311 - 11 109 171205 12 10 0 86 chain 229139 chr10 135534747 + 36762510 36765289 HERVL-int 5654 + 369 3138 17350 237 0 1 127 0 2 280 0 1 4 2 1 901 18 2 642 0 1 22 0 1 156 1 2 389 chain 20374 chr10 135534747 + 36769038 36769414 L1PB 1623 - 37 376 125977 11 2 0 22 54 30 8 1 0 13 4 0 14 3 0 4 1 0 30 11 9 198 chain 103643 chr10 135534747 + 36770209 36771489 LTR12C 1709 - 0 1709 35814 13 0 1 70 12 44 15 0 101 237 0 4 85 2 0 14 0 288 80 0 2 86 0 1 404 0 2 262 chain 40358 chr10 135534747 + 36849926 36850483 MLT2A2 560 - 0 560 68794 209 0 2 116 7 0 6 51 59 168 chain 4501 chr10 135534747 + 36857639 36857704 L1PA11 4918 - 426 489 200767 4 1 0 18 2 0 13 0 1 27 chain 24014 chr10 135534747 + 36896577 36896862 AluSp 311 - 26 311 110248 285 chain 24351 chr10 135534747 + 36947896 36948203 AluY 311 + 3 307 108368 122 1 2 164 4 0 16 chain 110478 chr10 135534747 + 36951838 36954114 L1PB1 5432 + 3745 5427 34082 50 6 7 99 0 24 108 1 0 50 4 5 339 0 28 29 7 4 17 1 17 106 3 0 169 3 2 178 648 25 101 19 17 18 1 0 13 12 8 9 2 0 52 2 1 15 1 0 45 6 5 10 1 0 4 21 11 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 2 1 17 2 0 5 chain 8752 chr10 135534747 + 36977099 36977203 L1PA8 5853 + 5744 5847 166905 16 1 0 87 chain 6155 chr10 135534747 + 36980289 36980363 MER76 683 + 70 144 183935 74 chain 26332 chr10 135534747 + 36982374 36982680 AluY 311 + 0 309 98685 35 0 1 4 0 1 91 0 1 176 chain 130272 chr10 135534747 + 37022563 37024110 LTR12C 1709 - 0 1709 28027 481 0 4 107 3 1 5 1 0 115 0 159 805 0 2 30 chain 3707 chr10 135534747 + 37026473 37026518 Tigger3c 601 - 67 112 211849 45 chain 4713 chr10 135534747 + 37045172 37045226 LTR24B 570 - 5 59 198359 54 chain 23602 chr10 135534747 + 37052525 37052818 AluY 311 + 5 300 112572 82 0 1 31 1 0 13 1 2 125 0 1 40 chain 12488 chr10 135534747 + 37109337 37109687 LTR12C 1709 + 776 1079 150306 28 153 33 72 3 18 4 0 1 37 0 41 27 3 19 23 chain 5970 chr10 135534747 + 37109379 37109447 LTR12C 1709 + 1018 1086 185513 68 chain 24269 chr10 135534747 + 37134201 37134498 AluSg7 307 - 11 307 108858 164 0 1 67 2 0 64 chain 75396 chr10 135534747 + 37135825 37137114 L1PA8 5853 - 0 966 45827 93 1 0 19 4 3 42 1 0 17 1 0 69 2 0 46 1 0 72 331 11 57 0 1 335 0 1 76 0 2 122 chain 28711 chr10 135534747 + 37145938 37146271 L1PA4 6152 + 5818 6152 90286 176 0 1 157 chain 533504 chr10 135534747 + 37181885 37188002 L1PA4 6152 - 0 6151 3767 165 0 1 242 0 1 365 1 0 743 1 0 431 0 2 520 1 0 172 0 1 898 4 10 145 1 21 981 0 5 1375 1 2 71 chain 10674 chr10 135534747 + 37194820 37195055 Tigger3a 397 + 60 353 157510 14 16 65 20 1 11 108 52 51 24 chain 522214 chr10 135534747 + 37196391 37203104 L1PA4 6152 - 0 6142 4935 6 0 5 55 0 1 361 0 2 162 9 0 258 0 4 2115 1 0 638 0 3 701 583 0 231 4 5 71 1 0 4 1 2 125 0 4 356 0 2 1031 chain 47702 chr10 135534747 + 37200714 37201247 L1PA2 6032 + 5493 6028 60693 107 0 2 426 chain 102433 chr10 135534747 + 37208431 37209643 L1PA6 6164 - 2 1231 36155 94 8 9 398 0 18 189 2 0 521 chain 24119 chr10 135534747 + 37218739 37219029 AluSq10 312 + 0 308 109644 72 0 18 218 chain 11039 chr10 135534747 + 37219400 37219621 MER30 238 - 1 238 156055 35 10 7 54 5 35 11 12 0 59 20 21 15 chain 2781 chr10 135534747 + 37238038 37238074 MER20 218 + 22 57 228998 12 1 0 23 chain 9569 chr10 135534747 + 37252334 37252451 L1PA8 5853 - 553 671 162741 113 0 1 4 chain 43547 chr10 135534747 + 37252454 37252976 L1PA8 5853 + 5336 5853 64744 58 0 2 168 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 5655 chr10 135534747 + 37277879 37277946 LTR12C 1709 - 836 902 188520 36 1 0 30 chain 72725 chr10 135534747 + 37296899 37297779 MER11D 897 - 0 897 47152 198 0 1 81 3 26 377 2 1 193 6 0 20 chain 25638 chr10 135534747 + 37301623 37301924 AluY 311 + 0 297 101544 77 2 1 53 3 0 166 chain 78597 chr10 135534747 + 37318158 37319043 L1PA4 6152 - 645 1530 44224 885 chain 55258 chr10 135534747 + 37319056 37319682 L1PA4 6152 + 5516 6143 55548 317 0 1 309 chain 543844 chr10 135534747 + 37327681 37333827 L1PA3long 6157 - 0 6151 2233 333 1 2 1929 0 1 197 1 0 1435 0 2 1521 0 1 562 0 1 167 chain 479134 chr10 135534747 + 37333836 37339573 L1PA5 6144 - 374 6144 7758 138 0 1 323 1 0 215 0 1 74 0 1 672 0 4 179 5 6 169 2 1 4 0 1 524 2 0 280 0 1 189 0 1 476 0 12 770 1 5 45 0 4 405 7 8 223 7 8 34 0 1 301 0 1 169 0 1 140 1 2 381 chain 7248 chr10 135534747 + 37351383 37351471 LTR12E 1234 + 162 250 175779 88 chain 129865 chr10 135534747 + 37355045 37356455 L1PA2 6032 + 4616 6029 28119 1128 0 3 282 chain 73076 chr10 135534747 + 37364873 37365984 LTR12C 1709 + 0 1534 46994 64 40 161 52 4 0 7 5 9 45 19 62 61 0 3 6 4 3 177 0 278 181 12 9 97 47 16 162 0 9 43 0 1 37 1 0 27 0 4 20 chain 22312 chr10 135534747 + 37373227 37373498 AluY 311 + 0 288 118863 22 0 18 83 2 0 9 0 1 155 chain 67781 chr10 135534747 + 37373522 37374261 L1PA2 6032 - 1708 2447 49332 739 chain 154290 chr10 135534747 + 37374270 37375964 L1PA2 6032 + 4341 6032 24066 675 3 0 1016 chain 133936 chr10 135534747 + 37377212 37378793 L1PA6 6164 - 2 1582 27228 8 2 0 150 2 1 170 0 1 381 0 1 120 0 1 14 1 0 733 chain 126629 chr10 135534747 + 37381417 37382994 THE1A-int 1579 + 0 1574 28911 658 5 13 598 4 0 213 8 0 75 0 1 16 chain 27577 chr10 135534747 + 37387793 37388143 THE1A 353 - 0 349 94413 243 2 1 105 chain 55625 chr10 135534747 + 37388961 37389694 L1PB1 5432 + 4171 4920 55349 33 0 2 132 0 5 85 0 1 6 1 0 174 0 4 14 3 0 55 0 6 13 6 8 211 chain 171168 chr10 135534747 + 37426171 37428118 L1P1 4361 + 2 1944 21919 61 3 0 521 0 3 53 7 0 482 0 1 578 0 1 242 chain 287086 chr10 135534747 + 37491155 37494539 L1PA5 6144 + 2720 6142 14215 716 0 3 825 2 0 363 0 1 176 0 20 335 3 0 41 0 17 49 0 1 4 4 8 20 0 1 835 4 0 7 chain 86652 chr10 135534747 + 37498903 37500000 L1PA7 6471 - 11 1106 40903 143 18 19 159 2 0 58 2 0 404 4 5 4 1 0 54 1 0 21 0 1 191 0 1 35 chain 74143 chr10 135534747 + 37500070 37500904 L1PA4 6152 - 0 842 46435 148 0 8 686 chain 19871 chr10 135534747 + 37500905 37501158 L1P1 4361 + 4091 4341 127589 59 1 0 155 1 0 23 2 1 12 chain 26743 chr10 135534747 + 37515051 37515345 L1PA5 6144 - 15 307 97184 183 2 0 109 chain 4643 chr10 135534747 + 37515345 37515401 L1P1 4361 + 2183 2249 197239 35 0 10 21 chain 3718 chr10 135534747 + 37542178 37542221 MER3 215 - 0 43 211659 43 chain 77827 chr10 135534747 + 37545682 37546670 L1P3 4156 - 49 1033 44605 134 0 2 145 2 0 306 5 1 396 chain 25820 chr10 135534747 + 37546688 37547059 L1PA8 5853 + 5489 5853 100790 75 1 0 44 2 0 68 23 20 4 0 1 39 2 1 19 2 1 92 chain 7171 chr10 135534747 + 37549728 37549814 L1PA16 3655 + 3492 3578 176266 86 chain 116069 chr10 135534747 + 37561367 37562908 L1PA10 4194 - 31 1570 32426 12 1 0 8 1 0 27 3 0 33 1 0 6 1 0 355 1 0 109 0 1 98 4 5 834 0 4 16 1 0 6 1 2 23 chain 467421 chr10 135534747 + 37567335 37573011 HERV9-int 5642 - 0 5642 8136 17 2 0 3 4 0 19 28 5 14 1 0 59 1 0 27 3 1 36 6 4 227 1 0 244 0 1 690 0 3 265 1 0 300 0 1 908 0 1 655 5 25 554 2 1 160 0 3 175 1 0 6 6 5 126 4 0 308 5 4 78 0 4 696 22 0 17 chain 4974 chr10 135534747 + 37573673 37573823 LTR12C 1709 - 800 872 195431 51 78 0 21 chain 49254 chr10 135534747 + 37605051 37605633 LTR14C 587 - 0 587 59549 61 5 7 166 0 3 350 chain 22280 chr10 135534747 + 37613923 37614159 AluYb8 318 - 11 247 118998 236 chain 43740 chr10 135534747 + 37615668 37616179 MER9a3 513 + 0 513 64522 485 0 2 26 chain 41969 chr10 135534747 + 37623122 37623589 L1PA3long 6157 - 4 470 66660 249 1 0 217 chain 3016 chr10 135534747 + 37626310 37626343 L1PA6 6164 + 5907 5940 224687 33 chain 29442 chr10 135534747 + 37635252 37635653 L1PA6 6164 - 8 414 86892 91 11 15 39 0 1 30 6 5 143 0 1 81 chain 184737 chr10 135534747 + 37696073 37698243 L1PA6 6164 + 3973 6156 20520 273 5 5 815 3 1 121 0 9 115 0 4 697 1 2 52 0 1 88 chain 77403 chr10 135534747 + 37701555 37702600 MER11C 1089 - 15 1089 44779 12 11 10 160 0 1 108 6 14 169 63 64 199 1 18 52 0 3 264 chain 27966 chr10 135534747 + 37714378 37714775 L1PA8 5853 - 0 390 93121 93 2 1 18 2 1 40 7 0 6 19 24 60 2 0 48 1 0 99 chain 70913 chr10 135534747 + 37782252 37783221 LTR5_Hs 974 + 0 960 47955 232 13 14 213 0 4 144 24 0 51 1 2 9 1 2 21 6 13 61 0 1 193 chain 10168 chr10 135534747 + 37814400 37814557 Tigger3 1187 - 184 331 159765 24 1 0 21 10 0 43 3 4 55 chain 24260 chr10 135534747 + 37820223 37820581 L1PA8 5853 + 5502 5853 108892 19 0 1 42 1 0 46 2 0 69 1 0 9 2 0 52 2 1 19 5 4 89 chain 11270 chr10 135534747 + 37825342 37825475 MER107 203 - 58 191 155160 133 chain 538273 chr10 135534747 + 37826909 37833028 L1PA4 6152 + 0 6151 3110 511 0 1 57 0 4 571 6 30 291 0 1 122 1 2 1764 2 0 155 1 0 134 0 8 522 0 1 1644 5 0 333 chain 39928 chr10 135534747 + 37839149 37839688 MER41A 554 + 0 539 69427 430 0 1 45 31 30 33 chain 60530 chr10 135534747 + 37854833 37855854 MER11B 1079 + 2 1063 52563 356 0 5 64 10 11 18 22 21 20 103 93 4 0 1 61 0 15 23 10 24 20 74 88 53 0 1 183 chain 13090 chr10 135534747 + 37882296 37882478 Tigger3c 601 + 321 513 147882 43 7 17 132 chain 8007 chr10 135534747 + 37889192 37889306 L1MA2 4263 - 1907 2022 171007 19 5 6 90 chain 3808 chr10 135534747 + 37893298 37893340 U3 216 - 174 216 210247 42 chain 256083 chr10 135534747 + 37894613 37897448 L1PA3long 6157 + 3321 6157 15931 1289 1 0 215 0 1 480 0 1 850 chain 337242 chr10 135534747 + 37917059 37920882 L1PA4 6152 - 11 3836 11966 659 0 4 94 1 0 43 8 0 43 1 0 178 0 1 857 0 1 305 0 2 926 0 4 708 chain 57479 chr10 135534747 + 37929888 37931153 L1MA3 4352 - 0 936 54252 21 3 0 3 1 0 13 6 5 34 304 0 18 2 0 56 0 2 21 17 9 22 0 10 6 7 0 18 43 21 303 18 21 20 0 4 113 0 3 5 39 36 60 1 0 48 2 3 61 chain 26518 chr10 135534747 + 37937026 37937369 THE1A 353 + 0 353 97981 105 6 5 8 0 11 224 chain 1161 chr10 135534747 + 37944686 37944754 L1PBa 3878 - 2519 2587 113617 68 chain 74985 chr10 135534747 + 37944759 37945808 MER11A 1151 - 0 1151 46021 160 9 10 60 0 1 18 34 16 24 8 41 136 0 1 111 9 0 28 0 7 58 1 0 32 7 8 146 4 0 66 1 0 29 0 91 108 chain 4251 chr10 135534747 + 37945808 37946057 L1PBa 3878 - 2587 2838 113617 58 0 2 191 chain 271924 chr10 135534747 + 37946073 37949934 L1PB1 5432 + 1643 5398 15087 419 0 1 129 1 5 297 4 0 38 0 4 306 1 0 30 1 5 51 64 5 197 6 0 298 1 2 304 15 12 76 0 2 138 0 1 61 9 6 142 1 2 289 0 1 160 3 0 5 37 25 59 0 1 96 0 3 102 1 0 131 0 1 55 0 1 11 9 0 24 42 34 22 1 0 26 2 1 15 1 0 44 1 0 15 67 51 24 1 0 22 1 0 6 chain 40719 chr10 135534747 + 37974092 37974645 LTR14 556 + 0 556 68277 267 3 7 172 32 31 79 chain 473052 chr10 135534747 + 37982368 37987886 L1PA5 6144 + 602 6123 7943 5 0 1 561 9 0 639 0 2 503 2 1 67 0 3 65 0 1 33 0 1 118 1 0 516 1 5 47 0 1 176 2 0 335 1 0 659 0 4 600 1 3 419 5 3 753 chain 24972 chr10 135534747 + 38012072 38012372 AluSq10 312 + 1 298 104945 165 0 1 123 4 0 8 chain 101164 chr10 135534747 + 38026129 38027642 LTR12C 1709 + 0 1709 36475 29 46 55 128 12 13 76 1 0 4 0 1 32 10 53 73 7 10 217 0 200 221 1 0 5 6 4 85 52 4 14 11 4 313 1 0 77 29 28 63 chain 79429 chr10 135534747 + 38052620 38053654 MER11B 1079 + 0 1079 43860 73 0 19 128 0 5 91 1 18 203 0 1 4 6 5 219 6 8 137 6 7 106 1 3 15 18 17 20 chain 534736 chr10 135534747 + 38054571 38060712 L1PA4 6152 + 6 6151 3624 54 1 17 503 1 0 256 17 0 203 0 1 1010 1 0 636 8 13 2091 0 2 436 0 1 669 2 0 253 chain 103628 chr10 135534747 + 38066466 38067625 L1PA2 6032 - 0 1170 35796 13 6 10 1051 0 7 89 chain 167564 chr10 135534747 + 38067625 38069467 L1PA2 6032 + 3046 4891 22330 9 1 0 49 0 4 1783 chain 20683 chr10 135534747 + 38089354 38089679 L1PA15 4387 - 37 344 125029 21 8 3 11 3 1 44 14 11 42 1 0 11 4 0 21 1 0 55 1 0 28 1 0 59 chain 12730 chr10 135534747 + 38111578 38111769 MER30 238 - 0 201 149332 43 1 0 64 2 0 5 6 19 70 chain 3485 chr10 135534747 + 38123895 38123934 LSU-rRNA_Hsa 377 + 326 365 215602 39 chain 6720 chr10 135534747 + 38127913 38128279 MER68 562 + 78 493 179533 21 100 99 34 154 204 57 chain 59484 chr10 135534747 + 38148029 38148780 LTR17 781 - 8 781 53122 54 1 23 156 10 11 37 12 11 154 1 0 231 0 1 95 chain 27912 chr10 135534747 + 38154892 38155228 LTR2B 499 + 7 345 93314 7 1 0 55 1 0 246 0 4 26 chain 25343 chr10 135534747 + 38163571 38163867 AluSp 311 - 14 310 102998 296 chain 544688 chr10 135534747 + 38185898 38191914 L1PA2 6032 + 1 6029 2110 255 1 0 1935 1 0 225 0 1 224 0 1 16 0 4 386 1 2 82 0 3 1043 3 1 334 2 1 1497 0 7 11 chain 75976 chr10 135534747 + 38193989 38194871 L1PA6 6164 + 5274 6161 45496 19 0 4 15 0 4 52 1 0 642 0 1 143 3 0 7 chain 3617 chr10 135534747 + 38205862 38205904 L1MB7 1623 - 202 244 213390 42 chain 27241 chr10 135534747 + 38208511 38208884 THE1C 375 - 0 375 95459 25 1 0 119 1 0 92 18 22 117 chain 2837 chr10 135534747 + 38217223 38217269 L1MEf 1413 - 959 1006 228127 29 3 4 14 chain 21679 chr10 135534747 + 38220051 38220393 THE1B 368 - 12 368 121472 45 5 0 8 0 1 49 40 55 25 0 3 9 1 0 122 0 1 38 chain 79542 chr10 135534747 + 38271424 38272641 MER11A 1151 - 0 1151 43808 71 2 0 62 0 2 44 0 1 80 23 5 13 17 13 164 0 5 6 5 1 89 157 0 48 0 7 8 0 3 236 0 2 137 0 99 55 chain 14797 chr10 135534747 + 38280469 38280645 MER107 203 - 27 203 141943 176 chain 8886 chr10 135534747 + 38283790 38283901 HY1 111 + 0 111 166203 111 chain 541290 chr10 135534747 + 38284371 38290379 L1PA2 6032 + 2 6017 2622 153 0 13 88 1 0 232 9 0 123 0 4 1583 1 0 1848 1 0 137 2 0 49 0 4 678 0 1 327 2 1 774 chain 39283 chr10 135534747 + 38292353 38292872 HERV1_LTRa 508 - 0 508 70347 49 1 2 9 0 2 202 11 0 154 2 0 22 1 2 19 1 0 6 1 0 41 chain 44142 chr10 135534747 + 38307915 38308411 L1PA4 6152 - 1 497 64025 496 chain 18112 chr10 135534747 + 38309570 38309848 L1MA2 4263 - 161 428 132562 19 2 0 24 8 1 93 16 14 116 chain 2747 chr10 135534747 + 38332137 38332166 L1PA4 6152 + 5852 5881 229524 29 chain 23573 chr10 135534747 + 38332174 38332435 L1PA4 6152 + 5890 6151 112721 261 chain 18983 chr10 135534747 + 38362613 38362903 MER49 923 + 213 507 130149 77 0 1 38 4 7 65 10 12 10 6 4 61 0 1 12 1 0 6 chain 39742 chr10 135534747 + 38371416 38371864 L1PA4 6152 + 5678 6127 69695 360 0 1 88 chain 76523 chr10 135534747 + 38388884 38389925 MER11C 1089 - 26 1089 45200 197 0 1 127 0 1 38 1 0 5 0 4 96 5 3 24 36 35 33 0 4 109 1 0 46 1 0 19 0 4 62 16 30 225 chain 25331 chr10 135534747 + 38393928 38394232 AluSp 311 - 7 311 103067 304 chain 434392 chr10 135534747 + 38395082 38400420 L1PA7 6471 + 1111 6470 9205 245 0 1 45 12 5 88 3 0 32 1 2 348 0 1 109 0 1 277 1 0 371 1 3 39 0 2 303 1 0 113 0 4 140 0 1 145 0 4 62 0 5 92 1 8 277 5 6 308 33 29 134 3 0 207 1 0 387 0 1 43 1 0 195 4 7 42 0 4 207 0 1 216 0 3 383 18 17 253 0 1 192 chain 5362 chr10 135534747 + 38418490 38418554 MER41B 635 + 481 547 191417 31 0 2 33 chain 51098 chr10 135534747 + 38422257 38422843 L1PA5 6144 - 12 599 58254 338 0 1 248 chain 74346 chr10 135534747 + 38422843 38423785 L1P2 5180 - 3656 4619 46336 569 0 25 136 13 11 201 3 1 20 chain 39457 chr10 135534747 + 38435702 38436201 MER9B 498 - 0 498 70079 52 6 1 39 0 1 4 3 4 210 0 3 180 1 0 4 chain 24571 chr10 135534747 + 38448574 38448988 LTR14A 344 - 0 344 107136 68 1 2 99 0 4 60 31 0 55 0 3 6 47 0 47 chain 102969 chr10 135534747 + 38471844 38473437 L1PB1 5432 - 9 1612 35999 9 1 0 10 1 0 13 1 0 22 1 0 12 22 20 5 1 0 5 2 0 30 14 2 15 1 0 43 26 24 45 3 1 8 6 2 10 1 0 11 1 0 16 0 22 96 1 0 148 2 0 144 4 22 67 11 7 136 12 17 80 3 4 119 1 0 36 13 13 207 24 28 154 chain 54275 chr10 135534747 + 38473478 38474177 L1PB1 5432 + 3091 3787 56178 492 2 1 125 0 1 28 3 0 49 chain 427619 chr10 135534747 + 38476450 38481906 L1PA8 5853 + 382 5853 9359 51 1 7 104 0 2 91 6 0 41 7 1 48 1 2 6 1 0 325 2 16 63 1 0 413 0 5 144 1 6 536 0 1 153 0 10 74 0 4 90 28 0 233 1 0 198 0 2 278 0 4 137 20 19 32 0 1 206 0 13 134 10 1 341 0 1 162 1 2 33 8 7 630 1 3 182 0 2 27 10 11 40 0 1 289 1 0 46 2 0 69 1 0 9 1 0 52 2 1 19 1 0 93 chain 529743 chr10 135534747 + 38505203 38511321 L1PA5 6144 + 0 6132 4216 206 6 5 2507 0 1 267 0 1 595 0 1 347 1 2 103 0 1 395 0 1 862 1 5 263 0 1 344 0 4 221 chain 14917 chr10 135534747 + 38519111 38519447 L1PB1 5432 - 10 318 141584 18 1 0 12 1 0 22 1 0 24 2 0 15 36 26 5 2 0 4 1 0 12 4 3 44 1 0 18 1 0 49 18 12 14 3 2 4 1 0 19 0 1 4 chain 44374 chr10 135534747 + 38519453 38520099 MER61-int 3695 + 2815 3465 63727 48 1 0 37 1 0 38 1 0 76 16 14 119 1 0 6 3 6 27 0 24 129 28 11 115 chain 8688 chr10 135534747 + 38530804 38531049 L1MA7 2200 + 2 247 167255 17 5 8 16 64 61 36 35 32 51 0 3 21 chain 139160 chr10 135534747 + 38551892 38553384 L1HS 6032 - 0 1490 26269 5 2 0 1485 chain 112808 chr10 135534747 + 38553384 38554587 L1HS 6032 + 3341 4544 33379 1203 chain 23372 chr10 135534747 + 38555174 38555445 L1PA7 6471 + 5719 5990 113801 271 chain 39410 chr10 135534747 + 38555445 38555913 L1PA7 6471 + 5993 6461 70146 468 chain 4777 chr10 135534747 + 38576220 38576276 MER5A 189 + 0 56 197610 56 chain 3772 chr10 135534747 + 38577084 38577129 MADE1 96 + 50 95 210781 45 chain 11459 chr10 135534747 + 38578396 38578554 MER107 203 - 47 203 154472 9 0 3 95 6 1 48 chain 6711 chr10 135534747 + 38591563 38591649 L1PA17 2846 + 2609 2693 179606 22 1 0 19 1 0 43 chain 14079 chr10 135534747 + 38614068 38614221 L1PA8 5853 + 5411 5564 144295 153 chain 3952 chr10 135534747 + 38614222 38614266 L1PA8 5853 + 5564 5608 208106 44 chain 5647 chr10 135534747 + 38614268 38614335 L1PA8 5853 + 5608 5675 188590 67 chain 13884 chr10 135534747 + 38614348 38614511 L1PA8 5853 + 5686 5847 144971 59 1 0 15 1 0 87 chain 9680 chr10 135534747 + 38631813 38631924 L1PA5 6144 - 2 113 162195 111 chain 11920 chr10 135534747 + 38643180 38643557 MER51C 639 - 7 385 69197 33 27 26 24 1 16 12 6 0 197 22 15 55 chain 48055 chr10 135534747 + 38643557 38644187 PABL_A 660 + 0 660 60439 20 0 15 33 8 22 75 2 0 8 0 1 57 1 2 46 8 7 222 0 2 150 chain 8252 chr10 135534747 + 38644187 38644448 MER51C 639 - 388 639 69197 39 5 4 165 9 0 43 chain 388033 chr10 135534747 + 38661589 38665988 L1PA5 6144 - 6 4433 10520 863 0 4 80 2 5 1696 0 4 154 0 18 156 1 0 786 0 1 604 1 0 56 chain 9787 chr10 135534747 + 38677244 38677385 LTR56 451 - 95 239 161666 60 5 8 76 chain 30058 chr10 135534747 + 38679343 38679731 L1PA6 6164 + 5766 6150 84634 159 6 1 78 6 7 139 chain 21822 chr10 135534747 + 38702986 38703268 AluSp 311 + 2 286 120935 51 12 14 219 chain 85221 chr10 135534747 + 38715478 38716542 MER11C 1089 - 0 1089 41445 11 2 1 362 0 3 113 12 13 199 0 1 50 0 17 40 12 15 40 0 1 223 chain 3289 chr10 135534747 + 38717980 38718016 MER21C 908 - 858 894 219204 36 chain 485918 chr10 135534747 + 38952320 38958461 L1PA5 6144 + 0 6140 7526 136 10 23 30 0 1 8 1 0 11 3 2 39 1 3 226 1 0 36 11 12 5 0 2 24 0 1 21 0 3 371 32 8 54 0 1 4 1 0 144 14 5 246 7 8 477 1 0 181 0 1 1029 6 11 125 0 1 30 0 2 221 1 0 168 1 0 120 5 8 2009 1 2 173 7 14 10 3 0 129 3 0 5 chain 212396 chr10 135534747 + 38958611 38961115 L1PA6 6164 + 3614 6151 18336 7 0 8 1020 1 0 563 1 0 22 4 6 24 0 20 28 0 4 28 0 1 441 1 2 105 1 0 258 chain 7442 chr10 135534747 + 38969740 38969951 L1PA15 4387 + 154 367 174504 16 1 2 78 93 94 23 chain 2862 chr10 135534747 + 38973574 38973606 L1PA15 4387 + 3783 3815 227650 32 chain 138382 chr10 135534747 + 38974505 38976705 L1PB1 5432 + 3340 5416 26417 50 0 1 140 0 1 196 49 9 85 1 0 82 2 31 235 0 1 388 13 12 56 7 4 55 0 2 17 0 2 41 0 1 63 0 1 202 0 2 28 6 5 32 92 25 9 19 0 22 1 0 6 1 0 14 26 20 34 1 0 7 1 0 10 20 19 33 1 0 15 3 0 7 14 5 18 3 1 5 1 0 12 2 0 26 1 0 14 9 8 12 1 0 12 chain 7330 chr10 135534747 + 38985868 38985955 L1PA8 5853 + 5766 5853 175227 87 chain 298560 chr10 135534747 + 38996172 39001852 L1P2 5180 + 2 3864 13500 146 2 1 35 5 2 8 1 0 53 1 0 160 1 0 100 1 0 8 1 0 106 0 1 32 1 0 3 0 51 75 0 15 139 0 6 497 0 1 105 1963 88 216 0 1 533 0 1 803 0 1 313 1 0 221 15 6 135 chain 110900 chr10 135534747 + 38998319 38999615 L1P1 4361 - 20 1314 33966 12 2 1 23 1 0 154 1 0 429 0 1 674 chain 275993 chr10 135534747 + 39017453 39020560 L1PA3long 6157 + 3046 6156 14872 124 2 1 91 0 1 791 0 1 580 0 1 789 0 1 730 chain 64598 chr10 135534747 + 39046096 39046842 L1PA5 6144 - 0 745 50747 259 1 0 362 1 0 4 0 1 119 chain 26079 chr10 135534747 + 39064630 39064935 AluYf4 310 + 5 307 99711 207 1 0 67 2 0 28 chain 17708 chr10 135534747 + 39070915 39071132 L1PA7 6471 - 7 223 133681 156 1 0 60 chain 14757 chr10 135534747 + 42397306 42397484 L1P1 4361 - 951 1129 142078 178 chain 19947 chr10 135534747 + 42397489 42397744 L1P1 4361 + 1068 1323 127312 255 chain 18903 chr10 135534747 + 42421542 42421811 L1P1 4361 + 1 270 130354 125 14 0 10 13 27 107 chain 79380 chr10 135534747 + 42421829 42422754 L1PA3long 6157 + 5225 6150 43874 925 chain 67554 chr10 135534747 + 42434071 42434856 L1PA3long 6157 - 5 787 49417 15 3 0 767 chain 531427 chr10 135534747 + 42436311 42442298 L1PA2 6032 + 7 6024 4026 249 1 0 108 0 1 713 0 1 803 0 1 315 1 0 626 0 4 1715 3 4 338 0 21 272 0 1 306 0 3 208 1 0 328 chain 66257 chr10 135534747 + 42463746 42464470 L1PA2 6032 - 2 726 49973 724 chain 20513 chr10 135534747 + 42464470 42464699 L1PA2 6032 + 4949 5178 125586 229 chain 12036 chr10 135534747 + 42464699 42464829 L1PA2 6032 + 5179 5309 152048 130 chain 514302 chr10 135534747 + 42484859 42490794 L1PA3long 6157 - 8 6149 5746 42 1 0 98 1 0 165 0 1 1911 0 1 9 0 1 737 0 1 486 0 1 1792 0 128 28 11 10 415 1 76 76 29 30 133 chain 147629 chr10 135534747 + 42523952 42525788 L1P1 4361 - 1142 3001 24934 22 6 5 675 0 1 199 1 2 13 0 1 105 7 9 158 0 1 67 0 1 109 0 1 13 0 9 330 0 6 31 6 7 94 chain 74753 chr10 135534747 + 42526055 42527021 LTR5_Hs 974 - 0 974 46135 104 19 17 19 8 15 163 1 0 188 0 1 177 0 1 177 0 2 110 chain 19384 chr10 135534747 + 42621368 42621677 THE1B 368 + 6 341 128992 33 1 16 114 1 0 28 1 0 4 35 48 92 chain 148615 chr10 135534747 + 42628459 42630090 L1PA3long 6157 - 8 1643 24802 841 0 4 790 chain 76589 chr10 135534747 + 42630093 42630951 L1PA3long 6157 + 3670 4528 45170 858 chain 129604 chr10 135534747 + 42632964 42634451 SVA_D 2077 + 0 2065 28177 12 17 0 29 1 26 624 0 40 38 0 40 102 0 489 44 0 1 620 chain 513618 chr10 135534747 + 42635451 42641592 L1PA4 6152 - 1 6151 5820 5 2 0 603 0 3 1052 0 2 1233 0 3 206 8 1 16 0 1 1572 0 5 228 0 1 134 0 1 465 0 4 40 1 0 458 2 1 116 chain 29634 chr10 135534747 + 42677308 42677663 L1PA5 6144 + 5796 6141 86113 95 1 0 236 10 1 13 chain 64847 chr10 135534747 + 42714181 42714921 L1PA5 6144 + 5399 6143 50634 590 0 7 142 3 0 5 chain 10410 chr10 135534747 + 42719852 42719986 L1MA5 2750 - 182 315 158641 4 1 0 129 chain 213310 chr10 135534747 + 42750581 42753077 L1PA6 6164 - 13 2538 18270 261 1 0 545 0 1 28 0 4 28 0 20 24 4 6 22 1 0 846 7 11 729 chain 507873 chr10 135534747 + 42753230 42759370 L1PA6 6164 - 3 6164 6335 5 3 0 132 3 0 6 8 15 176 0 1 430 0 1 1575 0 3 120 5 0 167 1 0 229 0 1 110 0 1 4 2 3 39 6 11 731 0 3 72 0 1 211 7 8 4 0 1 181 1 0 949 9 11 393 0 3 20 0 1 24 0 2 52 1 0 227 0 2 102 1 0 134 chain 29005 chr10 135534747 + 42788685 42788993 AluYg6 310 - 2 310 88965 308 chain 162078 chr10 135534747 + 42848862 42850643 L1PA3long 6157 + 4377 6157 23052 264 1 0 1516 chain 23983 chr10 135534747 + 42853831 42854120 AluSp 311 - 23 311 110428 40 1 0 248 chain 20054 chr10 135534747 + 42861250 42861481 L1PA5 6144 - 13 242 126958 5 1 0 216 1 0 8 chain 31461 chr10 135534747 + 42879504 42880009 LTR19A 502 - 0 502 81718 31 53 51 119 1 0 64 45 45 192 chain 36471 chr10 135534747 + 42891917 42892444 MER61-int 3695 - 356 880 74275 180 5 7 124 7 5 84 2 1 41 1 0 30 15 14 38 chain 23422 chr10 135534747 + 42898344 42898653 AluY 311 + 10 308 113519 123 15 6 151 2 0 18 chain 9521 chr10 135534747 + 42911059 42911215 L1MA3 4352 - 70 224 162970 23 2 0 10 2 0 6 6 9 55 1 0 51 chain 71638 chr10 135534747 + 42927185 42928067 L1PA7 6471 - 4 899 47632 8 2 0 95 0 13 43 0 1 168 0 2 4 1 0 168 4 0 74 0 1 266 0 3 49 chain 42593 chr10 135534747 + 42930223 42930826 L1PB 1623 - 263 856 65907 36 32 23 15 0 1 52 0 2 71 0 1 4 2 0 116 4 0 94 1 2 176 chain 548903 chr10 135534747 + 42930829 42936860 L1PA2 6032 + 1 6032 1588 256 1 0 661 1 0 1932 0 1 1284 0 1 1730 5 0 7 0 5 154 chain 9629 chr10 135534747 + 42936861 42936969 L1PB 1623 - 847 955 162440 108 chain 101882 chr10 135534747 + 42936977 42938620 L1PB1 5432 + 3784 5427 36291 190 21 25 257 1 0 129 1 2 67 0 1 6 12 17 136 11 7 138 4 5 78 0 5 7 2 0 229 21 43 10 1 0 10 1 0 11 17 11 45 28 26 25 5 6 10 1 0 15 79 62 13 1 0 34 1 0 10 2 0 9 1 0 4 chain 308871 chr10 135534747 + 42942645 42946062 L1PA3long 6157 + 2738 6156 13051 1761 0 4 807 0 4 50 13 6 786 chain 15813 chr10 135534747 + 42948051 42948273 L1PA8 5853 - 0 219 138917 93 7 6 12 1 0 63 2 1 44 chain 39917 chr10 135534747 + 42981971 42982463 MER9B 498 + 0 493 69436 4 1 0 268 0 1 171 1 2 47 chain 38361 chr10 135534747 + 42989556 42990050 MER9B 498 + 0 498 71629 4 1 0 37 0 4 399 1 2 52 chain 45300 chr10 135534747 + 42990346 42990859 MER9a1 513 + 0 513 62720 513 chain 379412 chr10 135534747 + 42992180 42997157 HERVK9-int 4720 + 36 4720 10772 13 13 9 52 1 0 13 1 0 9 1 0 28 1 0 229 315 9 607 16 40 195 34 6 294 0 7 1420 0 1 135 0 1 535 12 2 290 0 2 266 1 23 225 1 3 270 chain 43559 chr10 135534747 + 42997157 42997670 MER9a1 513 + 0 513 64733 513 chain 41532 chr10 135534747 + 43001539 43002034 MER9a2 513 - 22 513 67242 478 4 0 13 chain 235338 chr10 135534747 + 43002034 43005058 HERVK9-int 4720 - 0 4684 17007 387 1 0 692 5 2 4 1 0 295 51 689 148 0 10 23 2 1 49 0 924 95 8 103 919 0 5 212 1 0 24 8 7 7 1 0 66 12 9 13 chain 44951 chr10 135534747 + 43005673 43006186 MER9a2 513 - 0 513 63120 513 chain 5188 chr10 135534747 + 43010371 43010491 L1MA3 4352 - 0 112 193159 21 2 0 3 1 0 11 2 0 25 18 17 17 2 0 18 chain 530364 chr10 135534747 + 43021676 43027668 L1PA3long 6157 - 15 6157 4149 11 0 1 823 1 0 671 0 1 367 0 3 785 3 5 1144 0 2 11 1 0 4 0 1 1057 7 8 339 0 128 64 0 7 133 0 4 19 0 1 397 2 3 153 chain 4285 chr10 135534747 + 43029141 43029195 L1MA3 4352 + 4119 4173 202400 54 chain 527871 chr10 135534747 + 43029195 43035610 L1PA7 6471 - 4 6469 4415 145 0 1 4 1 0 61 0 6 626 0 3 737 0 2 531 0 3 66 2 1 464 0 4 256 1 8 449 0 4 454 0 2 53 0 5 418 0 4 803 0 1 577 1 0 45 5 13 229 0 1 5 0 1 143 0 1 210 8 0 7 0 8 114 chain 21699 chr10 135534747 + 43131000 43131274 AluSc5 308 + 23 296 121395 250 6 5 18 chain 37782 chr10 135534747 + 43140506 43141018 HERV1_LTRa 508 + 0 502 72438 41 1 0 6 1 0 45 3 0 51 4 6 55 1 2 37 11 0 203 0 2 9 1 2 43 chain 38904 chr10 135534747 + 43149894 43150417 HERV1_LTRa 508 + 0 508 70861 41 0 2 4 1 0 44 9 1 153 11 0 140 0 1 44 1 0 16 0 2 9 1 2 49 chain 542836 chr10 135534747 + 43160585 43166738 L1PA4 6152 + 11 6141 2367 342 4 5 222 1 0 216 0 1 39 17 0 123 6 0 4733 1 0 449 chain 8661 chr10 135534747 + 43170389 43170531 MER6A 605 + 377 525 167419 58 10 13 49 5 8 20 chain 20673 chr10 135534747 + 43181066 43181338 AluSc5 308 + 10 281 125065 38 12 11 222 chain 29258 chr10 135534747 + 43196323 43196652 L1PA4 6152 - 1 330 87747 329 chain 23816 chr10 135534747 + 43201236 43201732 L1PREC2 3366 - 330 786 111392 26 6 4 35 26 12 7 3 0 30 2 0 13 55 42 13 3 0 4 1 0 44 1 0 54 16 14 48 0 1 37 7 7 65 chain 29041 chr10 135534747 + 43208471 43208813 L1P1 4361 - 20 359 88799 12 2 1 23 1 0 157 1 0 146 chain 22193 chr10 135534747 + 43208819 43209076 L1PA5 6144 + 5892 6144 119381 90 5 0 162 chain 12898 chr10 135534747 + 43222193 43222558 MSTA 426 + 0 408 148635 28 0 1 64 0 1 40 2 0 30 147 189 16 25 26 13 chain 16327 chr10 135534747 + 43227469 43227651 L1PA6 6164 + 5980 6162 137412 182 chain 76896 chr10 135534747 + 43236653 43237683 MER11A 1151 - 9 1151 45030 154 6 7 60 0 1 36 17 0 22 21 54 118 6 7 136 11 12 91 0 1 149 4 0 60 0 4 52 8 0 24 0 99 55 chain 5438 chr10 135534747 + 43242476 43242542 MER41B 635 - 88 154 190634 66 chain 9904 chr10 135534747 + 43259383 43259505 MSTA-int 1630 - 1508 1630 161051 122 chain 21978 chr10 135534747 + 43260608 43260884 L1PA6 6164 + 5895 6162 120327 5 1 0 71 1 0 4 1 0 181 6 0 6 chain 29237 chr10 135534747 + 43306963 43307271 AluYa5 310 - 2 310 87870 308 chain 14460 chr10 135534747 + 43324583 43324771 AluY 311 + 105 295 143015 27 0 1 74 11 12 76 chain 143147 chr10 135534747 + 43342118 43343771 SVA_D 2077 + 0 2060 25630 8 0 19 9 0 5 12 0 8 11 29 0 470 0 80 290 0 137 60 0 79 115 0 98 328 0 10 321 chain 15140 chr10 135534747 + 43357906 43358141 L1PA8 5853 + 5608 5852 140946 69 24 22 41 2 1 19 3 2 13 0 13 64 chain 37167 chr10 135534747 + 43382698 43383222 L1MA2 4263 - 150 664 73283 8 1 0 47 7 0 91 18 19 6 1 0 136 12 9 119 0 1 78 chain 22995 chr10 135534747 + 43387328 43387584 L1PA3long 6157 + 5901 6157 115644 256 chain 116084 chr10 135534747 + 43395412 43396734 SVA_C 1631 + 213 1631 32423 429 1 9 186 0 42 110 0 41 159 0 1 338 0 4 99 chain 179957 chr10 135534747 + 43399415 43402223 L1PBa 3878 + 216 3738 20995 14 6 4 30 0 30 228 1 0 241 2 0 6 0 1 14 347 1083 529 7 11 136 17 9 20 6 5 4 0 1 124 7 0 40 0 4 307 8 6 24 1 0 135 4 0 255 15 5 44 28 4 111 1 2 72 2 1 22 chain 17637 chr10 135534747 + 43400056 43400276 L1PBa 3878 - 2616 2838 133889 29 0 2 191 chain 17780 chr10 135534747 + 43404926 43405187 MER1B 344 + 63 329 133478 91 3 4 108 18 22 41 chain 41373 chr10 135534747 + 43405996 43406478 L1PA3long 6157 - 1 483 67438 4 1 0 456 5 2 7 0 4 9 chain 16570 chr10 135534747 + 43406486 43406880 L1PB1 5432 + 5038 5398 136732 8 0 1 56 1 2 9 9 0 24 1 0 4 3 2 13 6 2 9 3 1 51 2 1 15 1 0 45 1 0 10 69 55 20 5 4 22 1 0 6 chain 14772 chr10 135534747 + 43462217 43462555 L1PB1 5432 - 22 329 142022 5 2 0 4 0 1 9 1 0 20 6 5 22 28 23 13 23 12 16 1 0 43 1 0 16 2 1 53 27 20 12 1 0 21 1 0 11 chain 10338 chr10 135534747 + 43462689 43462864 L1PB1 5432 + 5116 5281 158951 19 1 0 12 16 11 9 2 0 53 2 1 15 2 1 44 chain 141791 chr10 135534747 + 43512070 43513984 L1PA8A 6298 - 447 2395 25858 77 0 11 405 15 20 90 0 4 290 1 0 129 1 0 133 0 4 130 8 10 47 7 22 10 37 22 89 0 1 101 0 1 142 15 23 187 chain 32961 chr10 135534747 + 43519043 43519481 MLT2A1 477 - 0 477 79276 38 9 54 100 5 4 102 2 0 9 4 1 169 chain 7905 chr10 135534747 + 43526444 43526582 L1MA3 4352 - 24 155 171614 15 3 2 23 1 0 6 1 0 14 2 0 8 3 1 62 chain 4915 chr10 135534747 + 43565515 43565598 MER3 215 - 27 116 196103 24 9 15 50 chain 3910 chr10 135534747 + 43583679 43583864 HAL1-2a_MD 234 - 12 138 208712 24 93 55 11 6 0 7 9 0 20 6 0 9 chain 16316 chr10 135534747 + 43599775 43599977 AluSx1 309 + 93 297 137449 184 1 3 17 chain 14559 chr10 135534747 + 43603810 43604054 MER49 923 - 643 891 142710 118 50 53 44 0 1 32 chain 44903 chr10 135534747 + 43641479 43642032 MLT2A2 560 - 0 560 63173 166 0 8 39 2 0 141 0 1 205 chain 28721 chr10 135534747 + 43642411 43642722 AluYa5 310 - 3 310 90241 26 3 0 5 1 0 276 chain 21733 chr10 135534747 + 43677331 43677575 MER11B 1079 - 822 1072 121269 44 0 6 200 chain 146546 chr10 135534747 + 43737993 43739850 SVA_A 1864 + 15 1864 25082 607 3 74 28 1 0 39 1 0 31 40 1 58 1 4 30 1 0 65 40 0 44 7 10 53 3 0 76 2 0 10 1 0 39 1 4 676 chain 1998 chr10 135534747 + 43738714 43738743 SVA_A 1864 + 877 905 132907 9 1 0 19 chain 2155 chr10 135534747 + 43738898 43738938 SVA_A 1864 + 766 805 71408 1 0 2 31 3 0 5 chain 26227 chr10 135534747 + 43762711 43763009 AluY 311 + 16 310 99102 110 4 0 184 chain 157609 chr10 135534747 + 43796694 43799875 HERVK22-int 3844 - 48 3672 23647 46 1 0 68 833 217 28 11 7 19 66 48 7 1 0 10 75 54 45 1 0 9 5 1 39 2 0 21 1 0 35 2 1 17 1 0 6 1 0 69 2 1 212 3 0 470 4 0 280 0 3 609 47 56 6 0 2 73 1 1110 55 chain 31301 chr10 135534747 + 43816011 43816463 LTR7B 505 + 0 495 81990 108 0 10 66 6 68 28 29 0 82 1 0 46 0 2 31 14 13 41 chain 144036 chr10 135534747 + 43824274 43826082 SVA_A 1864 + 27 1864 25472 175 0 1 519 49 6 32 0 113 13 1 0 64 39 0 148 2 0 46 7 9 129 2 0 582 chain 2828 chr10 135534747 + 43825127 43825164 SVA_A 1864 + 877 913 121938 9 1 0 27 chain 73873 chr10 135534747 + 43832650 43833618 LTR5_Hs 974 + 0 974 46577 285 0 1 181 0 1 81 4 3 68 4 5 31 1 0 163 8 15 19 20 18 103 chain 21713 chr10 135534747 + 43836732 43837013 AluSz 310 + 8 288 121336 125 12 11 144 chain 17256 chr10 135534747 + 43850123 43850358 AluSp 311 + 53 311 134906 13 0 8 35 0 2 19 4 0 88 0 24 27 7 0 42 chain 10256 chr10 135534747 + 43853792 43853946 Tigger4b 360 - 25 186 159350 14 16 15 72 0 8 52 chain 24326 chr10 135534747 + 43856120 43856402 AluSc 308 - 24 308 108512 130 1 3 151 chain 24331 chr10 135534747 + 43863688 43863970 AluSp 311 - 19 301 108479 282 chain 24321 chr10 135534747 + 43911427 43911714 AluSp 311 + 5 292 108538 287 chain 59100 chr10 135534747 + 43918124 43918821 SVA_E 1901 + 14 1896 53330 139 1 0 322 27 1219 59 6 0 143 chain 11486 chr10 135534747 + 43919144 43919292 AluSp 311 + 0 146 154349 80 2 1 51 1 0 14 chain 17727 chr10 135534747 + 43927528 43927781 AluSg7 307 - 15 299 133626 22 12 11 30 0 31 56 10 11 123 chain 26111 chr10 135534747 + 43929805 43930098 AluYf4 310 - 19 310 99575 27 6 4 260 chain 23193 chr10 135534747 + 43937902 43938190 AluSg4 309 - 22 309 114707 75 2 1 5 0 1 74 1 0 131 chain 122862 chr10 135534747 + 43941131 43942670 SVA_B 1603 - 4 1596 30092 44 0 1 561 0 124 41 0 3 88 80 0 63 0 3 475 0 4 115 0 14 19 24 8 29 chain 3227 chr10 135534747 + 43941903 43941945 SVA_B 1603 - 787 829 196077 42 chain 22935 chr10 135534747 + 43946408 43946683 AluSp 311 - 25 301 115931 89 0 1 186 chain 154582 chr10 135534747 + 43959830 43961629 SVA_D 2077 - 9 2019 24035 341 0 3 269 0 1 53 9 0 11 3 15 50 0 78 49 0 78 76 0 1 7 1 2 32 0 86 28 40 0 830 chain 2226 chr10 135534747 + 43960776 43960799 SVA_D 2077 - 1595 1618 230120 23 chain 5066 chr10 135534747 + 43962204 43962325 Tigger1 2417 + 1304 1439 194476 28 30 43 19 11 12 33 chain 26122 chr10 135534747 + 43964152 43964465 AluY 311 + 0 311 99517 37 3 0 95 0 1 178 chain 22591 chr10 135534747 + 43965848 43966120 AluSp 311 - 29 299 117622 150 3 0 25 0 1 94 chain 13135 chr10 135534747 + 43970384 43970630 MER61C 433 - 162 405 147706 61 74 71 111 chain 50032 chr10 135534747 + 43997416 43997980 L1PA5 6144 + 5569 6143 58998 161 0 1 264 0 9 139 chain 9241 chr10 135534747 + 43998056 43998191 Tigger3b 1229 + 197 334 164349 89 1 5 37 2 0 6 chain 5200 chr10 135534747 + 44001981 44002045 LTR53 516 + 157 221 193016 64 chain 26796 chr10 135534747 + 44004931 44005327 MLT2A1 477 - 90 477 96997 86 29 20 77 0 1 19 3 4 10 4 1 38 0 1 130 chain 451817 chr10 135534747 + 44005327 44011874 HERVL-int 5654 - 0 5654 8704 219 1 2 24 0 2 54 0 4 219 13 14 124 312 0 65 0 5 649 0 1 353 1 5 283 0 2 5 2 0 437 0 1 231 0 2 251 37 8 297 0 4 277 4 5 112 5 7 20 3 6 236 325 0 123 0 4 626 1 3 43 5 20 36 0 5 23 0 2 51 0 15 207 0 1 153 0 2 67 307 0 97 10 13 239 chain 29500 chr10 135534747 + 44011882 44012327 MLT2A1 477 - 12 477 86639 22 34 50 9 6 0 101 0 7 69 0 4 23 0 1 9 4 1 22 1 0 119 0 2 26 chain 520115 chr10 135534747 + 44022619 44029062 L1PA6 6164 - 2 6164 5145 502 2 0 193 5 6 85 297 0 68 1 0 265 1 0 544 6 8 596 5 4 667 2 1 38 3 0 5 0 2 394 0 5 453 0 1 24 0 1 405 1 6 95 0 3 5 1 2 49 0 1 486 5 4 699 25 27 280 0 2 236 chain 83835 chr10 135534747 + 44033289 44034399 MER11A 1151 + 9 1151 41969 99 0 2 66 8 0 54 0 4 54 14 10 28 0 2 39 0 1 243 9 6 56 6 9 137 6 40 212 0 1 79 chain 68454 chr10 135534747 + 44039266 44040100 SVA_A 1864 + 618 1862 49067 72 2 0 37 2 0 141 45 459 535 chain 24262 chr10 135534747 + 44072895 44073280 THE1D 372 + 0 372 108890 75 19 0 20 3 2 63 8 6 19 5 8 39 9 15 125 chain 384547 chr10 135534747 + 44082392 44086918 HERVK9-int 4720 + 183 4716 10627 1042 0 1 1044 1 0 782 0 4 50 0 1 526 1 0 32 0 1 414 1 0 254 0 1 55 2 0 222 8 12 80 1 0 5 0 1 6 chain 37548 chr10 135534747 + 44086923 44087417 MER9a3 513 + 0 497 72759 18 0 2 90 0 1 145 10 9 169 0 1 62 chain 10082 chr10 135534747 + 44095119 44095271 LTR49-int 1717 + 582 733 160169 57 9 10 42 1 0 28 1 0 14 chain 45594 chr10 135534747 + 44096942 44097454 MER9a1 513 - 0 513 62411 288 0 1 224 chain 29528 chr10 135534747 + 44113695 44114006 AluYb8 318 + 0 311 86532 311 chain 5895 chr10 135534747 + 44120991 44121078 LTR49 580 - 10 102 186229 42 2 4 23 0 3 20 chain 11214 chr10 135534747 + 44122069 44122229 MER30 238 - 0 183 155372 45 0 3 61 13 33 41 chain 12509 chr10 135534747 + 44128153 44128361 MER30 238 + 0 225 150210 16 17 0 8 4 23 61 5 0 8 10 30 79 chain 84857 chr10 135534747 + 44130914 44132023 L1PA13 3608 - 120 1267 41569 22 1 0 18 2 0 5 2 0 47 2 0 5 1 0 56 1 0 62 2 0 97 4 0 17 1 0 26 3 1 346 3 0 19 0 10 119 7 6 71 4 0 29 0 54 137 chain 38683 chr10 135534747 + 44148469 44148931 LTR2 463 - 0 463 71171 100 0 1 90 0 1 113 1 0 158 chain 56027 chr10 135534747 + 44151636 44152293 L1PA6 6164 + 5507 6162 55103 157 1 2 165 0 1 324 4 0 6 chain 537206 chr10 135534747 + 44212158 44218280 L1PA4 6152 + 10 6143 3286 953 0 1 590 0 1 160 0 1 670 2 6 1257 5 6 632 1 3 668 1 0 413 5 6 272 6 7 487 chain 36718 chr10 135534747 + 44228164 44228566 L1PA4 6152 - 11 413 73931 402 chain 18511 chr10 135534747 + 44228566 44228775 L1PA4 6152 + 5495 5704 131469 209 chain 53256 chr10 135534747 + 44236965 44237565 L1P1 4361 - 2277 2875 56853 353 2 0 245 chain 35806 chr10 135534747 + 44252170 44252602 L1PA6 6164 - 2 435 75122 8 2 0 158 1 4 263 chain 47759 chr10 135534747 + 44254996 44255641 LTR12_ 688 - 63 688 60649 20 0 2 400 24 0 110 1 3 90 chain 17883 chr10 135534747 + 44262861 44263158 L1PB3 3668 - 297 628 133157 23 5 41 16 1 0 41 1 0 28 1 0 6 30 32 98 2 1 45 chain 3536 chr10 135534747 + 44292192 44292357 L1MC5 759 - 37 211 214766 7 5 0 34 94 108 25 chain 32370 chr10 135534747 + 44307661 44308274 MLT2A1 477 - 0 477 80242 37 187 55 197 0 2 5 3 0 11 4 1 169 chain 7656 chr10 135534747 + 44307792 44307884 MLT2A1 477 + 0 92 173187 92 chain 14710 chr10 135534747 + 44319304 44319604 MER1B 344 + 32 344 142238 25 9 8 15 8 12 85 43 39 37 19 32 59 chain 334081 chr10 135534747 + 44328352 44332456 L1P3 4156 - 17 4156 12051 24 2 1 7 2 0 562 0 4 40 2 1 248 0 1 272 1 0 341 1 0 285 0 5 414 0 1 434 0 23 258 16 6 225 12 14 294 11 20 293 6 8 35 5 4 68 1 0 48 1 7 196 chain 3405 chr10 135534747 + 44352117 44352172 MER53 195 + 16 72 216995 11 5 6 39 chain 4918 chr10 135534747 + 44386398 44386613 MER8 282 + 3 256 196072 55 1 0 4 55 97 18 67 64 15 chain 41950 chr10 135534747 + 44389376 44389929 MLT2A2 560 - 0 560 66685 69 0 1 42 0 1 34 0 24 325 9 0 5 10 0 59 chain 27005 chr10 135534747 + 44391705 44392049 THE1A 353 + 0 350 96266 105 6 5 88 1 0 4 0 1 37 0 7 103 chain 513525 chr10 135534747 + 44410259 44416344 L1PA6 6164 - 4 6164 5829 127 0 1 15 2 3 188 1 0 31 0 2 177 0 4 713 0 1 473 0 5 105 1 0 136 0 4 223 0 26 402 0 1 246 0 5 82 0 1 284 0 1 314 0 3 184 0 4 73 0 1 728 0 1 689 0 4 271 0 2 36 0 4 80 2 1 106 25 32 371 chain 287114 chr10 135534747 + 44485226 44488639 L1P1 4361 - 962 4360 14212 718 0 1 259 0 3 1271 13 1 175 1 2 258 16 9 132 1 0 569 chain 154657 chr10 135534747 + 44533042 44534739 L1PA3long 6157 + 4443 6140 24023 1697 chain 231953 chr10 135534747 + 44572541 44575266 L1P2 5180 - 1358 4093 17200 529 0 1 1550 2 1 290 0 1 268 4 13 82 chain 507847 chr10 135534747 + 44586369 44592500 L1PA6 6164 + 0 6161 6339 371 25 32 97 11 10 371 1 0 169 1 0 5 0 1 19 11 14 16 3 0 234 7 8 770 0 3 1060 1 5 4 0 1 320 5 5 286 1 4 496 0 2 345 0 1 930 0 1 379 8 17 185 chain 534468 chr10 135534747 + 44602182 44608345 L1PA4 6152 - 1 6151 3656 1054 0 1 432 1 0 1263 0 6 102 2 1 83 1 0 1739 0 1 618 17 0 275 1 0 575 chain 487005 chr10 135534747 + 44632667 44638271 L1PA4 6152 + 6 6152 7483 454 18 13 107 1 0 1052 0 529 623 0 4 163 0 1 274 0 1 38 0 2 460 1 0 560 1 3 49 9 13 282 0 1 518 0 5 994 chain 496931 chr10 135534747 + 44641561 44647776 L1PA4 6152 - 9 6151 7013 229 5 7 607 318 0 60 0 1 130 0 9 470 0 1 277 9 13 49 1 3 1054 1 0 252 0 2 556 1 4 98 2 1 56 2 0 6 0 2 816 1 0 209 0 1 281 0 4 64 1 2 445 0 1 118 0 217 97 chain 63391 chr10 135534747 + 44685211 44685947 L1PA5 6144 + 5401 6136 51283 697 3 2 36 chain 114385 chr10 135534747 + 44709929 44711465 THE1B-int 1605 + 13 1568 32971 57 1 0 184 0 1 15 0 2 28 0 6 79 14 0 9 7 8 15 1 0 15 10 35 127 4 0 284 5 7 311 9 10 193 0 1 168 chain 21302 chr10 135534747 + 44711502 44711835 THE1B 368 + 0 344 122854 44 19 26 99 6 5 20 1 0 82 6 12 56 chain 121246 chr10 135534747 + 44717583 44718870 L1HS 6032 - 0 1287 30620 1287 chain 475605 chr10 135534747 + 44721457 44729585 L1PA8A 6298 - 7 6258 7868 225 0 12 88 21 0 23 1 3 370 0 2 35 4 0 417 1 10 44 0 1 122 6 24 154 1579 0 839 2 0 39 1 8 10 2 0 389 0 1 33 7 31 20 0 1 24 16 15 11 1 7 364 0 4 50 0 1 409 1 0 4 0 1 63 6 7 80 3 7 444 0 1 478 319 0 188 5 4 87 5 0 19 3 0 6 2 5 316 7 4 355 1 0 4 1 0 6 1 0 19 2 0 63 1 0 13 6 0 23 1 0 42 1 0 11 6 2 10 1 0 8 2 1 5 1 0 7 22 18 15 2 0 12 1 0 7 2 1 9 4 3 9 2 1 10 0 1 7 14 9 24 37 38 18 chain 125113 chr10 135534747 + 44722980 44724522 L1PA7 6471 + 4918 6463 29357 37 4 5 232 1 3 352 0 1 49 1 0 24 1 0 99 0 1 585 0 1 9 1 0 147 chain 29346 chr10 135534747 + 44734313 44734622 AluYf4 310 - 1 310 87317 309 chain 267602 chr10 135534747 + 44741623 44744887 L1PA7 6471 - 10 3301 15313 138 38 39 24 0 2 38 0 1 271 1 10 234 1 4 83 0 3 8 0 4 633 0 1 27 0 1 57 0 1 448 0 1 525 0 1 68 21 20 649 chain 85980 chr10 135534747 + 44747921 44749013 L1PA8 5853 - 2 1092 41162 88 1 0 22 2 1 51 9 7 40 1 0 25 9 7 46 1 0 114 0 1 253 0 3 184 0 2 246 chain 24900 chr10 135534747 + 44749998 44750494 L1PB1 5432 + 4957 5424 105343 38 1 2 6 1 0 31 7 8 4 0 1 5 1 0 20 0 1 30 1 0 11 1 0 24 1 0 9 27 20 53 2 1 16 1 0 43 1 0 13 24 15 15 12 9 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 555734 chr10 135534747 + 44763763 44769914 L1PA3long 6157 + 4 6157 748 4289 1 3 1861 chain 253036 chr10 135534747 + 44770312 44773814 L1PA7 6471 + 2028 6465 16079 99 0 5 28 51 0 329 4 3 148 0 1 222 9 1299 152 0 1 171 2 3 966 0 2 163 1 5 516 314 0 174 23 20 130 chain 5155 chr10 135534747 + 44815030 44815095 L1MB7 1623 + 114 179 193491 65 chain 464139 chr10 135534747 + 44900844 44907298 L1PA7 6471 - 3 6466 8252 7 4 0 454 310 2 362 5 4 18 2 1 670 5 6 553 1 0 231 7 8 53 0 1 474 0 1 134 6 5 77 0 2 11 0 1 745 0 1 15 2 0 301 9 10 405 0 1 360 9 8 116 0 1 183 0 13 169 0 21 90 38 38 13 17 17 17 1 76 57 5 15 21 24 23 65 5 8 46 32 229 41 93 92 191 chain 28181 chr10 135534747 + 44901309 44901609 AluYa5 310 + 0 299 92374 132 1 0 167 chain 47846 chr10 135534747 + 44910625 44911251 L1PA15 4387 - 250 866 60593 7 1 0 26 1 0 171 1 0 26 1 0 17 2 0 5 6 1 71 2 0 185 0 3 104 chain 170387 chr10 135534747 + 44923823 44926746 L1PB1 5432 - 9 2414 22006 19 1 0 12 1 0 22 1 0 5 1 0 4 0 1 14 2 0 14 9 6 17 17 7 6 1 0 16 6 5 39 2 1 14 2 1 52 23 17 5 1 0 8 1 0 24 1 0 5 10 11 24 0 8 134 1 13 291 3 0 79 13 14 88 1 2 281 0 1 100 5 0 100 0 1 83 0 1 59 2 14 24 2 0 55 8 10 75 6 7 322 518 0 294 chain 45534 chr10 135534747 + 44925940 44926452 MER9a1 513 + 0 513 62472 382 0 1 130 chain 39143 chr10 135534747 + 44937086 44937556 L1P1 4361 - 20 487 70547 12 2 1 23 1 0 157 1 0 274 chain 82162 chr10 135534747 + 44937564 44938463 L1PA3long 6157 + 5258 6157 42700 899 chain 510680 chr10 135534747 + 44943692 44950107 L1PA7 6471 - 2 6470 6100 624 0 1 220 0 3 18 0 1 837 0 1 92 7 11 483 22 22 57 0 1 88 6 8 166 0 1 221 0 2 6 12 9 13 1 3 60 1 0 140 0 1 42 6 7 204 0 1 35 0 5 453 0 1 463 8 12 173 1 0 897 1 25 319 0 6 103 14 15 68 1 6 134 9 0 52 0 1 154 9 8 195 chain 67837 chr10 135534747 + 44951441 44952323 L1PA10 4194 - 33 924 49313 11 1 0 31 0 6 35 1 0 139 0 1 110 3 7 6 2 0 307 1 0 56 0 1 112 0 2 67 chain 98587 chr10 135534747 + 44975762 44978129 L1PA6 6164 + 0 2360 6852 159 13 10 26 0 1 4 1 0 35 4 6 51 0 1 169 1 0 57 0 2 46 1 0 287 0 1 463 0 1 4 1 0 1002 8 0 35 chain 504883 chr10 135534747 + 44978266 44983767 L1PA2 6032 - 6 6032 6547 4173 0 1 1230 0 524 98 chain 157898 chr10 135534747 + 44983970 44987761 L1PA6 6164 + 2360 6162 6852 829 1 2 47 0 5 455 2 0 546 0 1 932 0 3 191 10 13 778 chain 29608 chr10 135534747 + 44996918 44997227 AluYb8 318 - 9 318 86188 309 chain 204916 chr10 135534747 + 45018280 45020634 L1PA5 6144 - 5 2371 18864 851 0 1 8 0 4 434 0 5 412 0 1 94 0 1 365 10 9 62 0 1 118 chain 66592 chr10 135534747 + 45029578 45030300 L1PA2 6032 - 0 722 49833 722 chain 72490 chr10 135534747 + 45037567 45038360 L1PA4 6152 - 0 806 47270 559 0 13 234 chain 36131 chr10 135534747 + 45044584 45045081 MER51A 677 + 0 661 74727 109 0 1 22 0 9 16 1 0 13 0 63 12 6 106 233 8 0 77 chain 2857 chr10 135534747 + 45046319 45046356 MER47C 97 + 15 66 227716 7 0 14 30 chain 3851 chr10 135534747 + 45062358 45062446 L1MD2 1676 - 189 275 209635 15 0 2 5 2 0 22 10 9 6 0 2 5 3 0 20 chain 5257 chr10 135534747 + 45067406 45067468 MSTB 430 + 7 69 192434 62 chain 94055 chr10 135534747 + 45074269 45075360 L1PA7 6471 - 10 1102 38334 503 0 1 588 chain 56816 chr10 135534747 + 45075361 45076034 L1PA7 6471 + 4680 5355 54644 534 0 1 81 1 2 57 chain 22334 chr10 135534747 + 45078435 45078723 AluSc 308 + 8 293 118756 44 8 5 236 chain 56962 chr10 135534747 + 45079033 45079660 L1PA4 6152 + 5524 6151 54553 627 chain 434334 chr10 135534747 + 45089994 45095770 L1PA8 5853 + 108 5853 9206 68 3 5 48 29 30 37 63 47 32 0 1 235 1 0 4 0 1 17 0 6 4 6 0 502 0 2 18 8 9 152 19 11 143 5 3 25 27 0 17 1 0 77 4 1 5 0 3 103 11 13 75 0 1 215 2 0 62 1 0 138 0 2 1161 25 26 630 3 14 269 0 1 275 0 1 410 0 2 84 0 1 133 8 10 150 2 0 5 1 3 116 4 5 48 1 0 44 2 0 70 2 1 9 2 1 37 0 1 12 3 2 19 1 0 93 chain 6003 chr10 135534747 + 45118864 45118949 L1PA7 6471 - 3 85 185214 10 3 0 72 chain 19453 chr10 135534747 + 45128002 45128247 AluSp 311 + 10 283 128807 55 0 1 27 0 20 101 0 7 62 chain 237657 chr10 135534747 + 45138360 45141240 L1PA8 5853 + 2979 5853 16898 406 3 5 1620 2 0 194 5 6 354 10 9 37 2 0 69 2 0 10 1 0 10 1 2 39 2 1 19 1 0 93 chain 3841 chr10 135534747 + 45152349 45152396 L1MC 810 - 100 147 209765 47 chain 190283 chr10 135534747 + 45187163 45189303 L1PA4 6152 + 4011 6152 20017 1605 5 1 524 0 5 6 chain 26767 chr10 135534747 + 45249652 45250021 L1PA8 5853 - 7 369 97100 86 1 0 19 2 1 52 1 0 6 8 7 67 2 0 39 9 8 77 chain 41679 chr10 135534747 + 45250030 45250516 L1PA8 5853 + 4994 5479 67053 15 2 0 275 0 1 194 chain 14955 chr10 135534747 + 45308549 45308914 MER57D 437 + 46 435 141461 31 8 13 31 13 1 28 18 11 33 95 133 108 chain 26918 chr10 135534747 + 45338220 45338507 AluYd8 298 + 0 287 96560 287 chain 23417 chr10 135534747 + 45379782 45380303 L1PB1 5432 + 4938 5424 113555 155 13 12 9 1 0 24 1 0 9 35 28 32 0 1 6 1 0 6 2 1 16 1 0 37 1 0 7 1 0 15 3 0 7 82 67 21 1 0 13 1 0 16 1 0 4 chain 14912 chr10 135534747 + 45387797 45387964 L1PA4 6152 + 5984 6151 141596 167 chain 2407 chr10 135534747 + 45402527 45402582 MIRc 230 + 77 132 234142 13 1 0 10 14 15 17 chain 18856 chr10 135534747 + 45442574 45442787 L1PA5 6144 + 5922 6135 130500 213 chain 544537 chr10 135534747 + 45504625 45510639 L1PA3long 6157 - 1 6153 2136 148 0 1 2737 0 4 971 2 6 1385 0 128 621 3 4 147 chain 14045 chr10 135534747 + 45514563 45514760 Tigger1 2417 - 1808 2033 144401 10 0 1 7 1 0 4 0 1 27 6 33 142 chain 49977 chr10 135534747 + 45521689 45522237 L1PA3long 6157 + 5604 6152 59035 548 chain 86843 chr10 135534747 + 45527067 45528134 MER11B 1079 - 16 1077 40840 181 0 1 115 6 0 13 0 1 179 13 14 300 3 0 56 2 1 4 0 1 195 chain 29640 chr10 135534747 + 45540915 45541313 LTR7 482 - 5 482 86096 110 1 2 94 8 48 108 8 46 69 chain 10508 chr10 135534747 + 45543557 45543714 L1PA16 3655 + 3455 3599 158218 69 0 1 53 3 0 9 11 0 12 chain 5552 chr10 135534747 + 45552165 45552230 MER41B 635 + 482 547 189550 65 chain 9930 chr10 135534747 + 45583343 45583465 MSTA 426 + 0 123 160927 28 0 1 94 chain 41367 chr10 135534747 + 45590718 45591247 LTR61 567 + 0 566 67448 22 7 44 69 0 5 54 4 0 25 6 5 342 chain 35015 chr10 135534747 + 45593963 45594645 L1PB1 5432 + 4853 5427 76172 62 0 4 184 15 11 20 1 0 12 1 0 12 22 16 45 1 0 17 1 0 32 0 1 10 86 5 12 24 16 15 2 0 5 1 0 14 2 0 24 1 0 22 18 16 14 2 0 5 chain 21587 chr10 135534747 + 45604471 45604754 AluSq2 311 + 0 302 121822 63 0 2 63 0 1 15 3 0 6 2 5 39 0 16 92 chain 16345 chr10 135534747 + 45607382 45607564 L1PA6 6164 - 2 184 137356 182 chain 12220 chr10 135534747 + 45610251 45610616 MSTA 426 - 18 426 151341 13 25 26 16 45 53 20 82 116 30 2 0 28 12 13 66 0 1 26 chain 22270 chr10 135534747 + 45632767 45633264 L1PREC2 3366 + 2590 3047 119035 99 0 1 27 1 0 11 25 24 54 1 0 44 1 0 4 3 0 13 55 42 13 2 0 30 3 0 7 39 25 22 6 4 37 chain 71940 chr10 135534747 + 45670840 45671709 MER11D 897 - 0 897 47502 249 5 7 10 0 3 11 2 25 592 chain 29616 chr10 135534747 + 45673258 45673571 AluYb8 318 - 5 318 86158 313 chain 21070 chr10 135534747 + 45745052 45745309 AluYk4 311 - 2 256 123661 49 1 2 87 2 0 45 2 0 71 chain 148904 chr10 135534747 + 45754728 45756436 SVA_D 2077 + 0 2075 24771 35 3 1 340 0 4 78 0 39 284 0 40 96 0 264 32 0 1 228 1 2 477 0 20 134 chain 39450 chr10 135534747 + 45757428 45757906 LTR15 485 + 0 485 70092 218 4 10 91 4 5 161 chain 497017 chr10 135534747 + 45761249 45767389 L1PA6 6164 + 0 6155 7009 184 11 12 252 9 1 12 10 0 108 1 0 218 0 17 262 2 1 6 0 1 16 0 1 5 1 0 23 0 1 4 1 0 129 0 1 1070 2 3 602 1 0 4 0 1 233 1 7 22 6 7 13 0 1 505 2 3 163 0 1 327 1 3 430 7 2 642 0 4 15 0 4 88 1 0 751 chain 25765 chr10 135534747 + 45769611 45769952 MER4A1 472 + 0 346 101024 74 6 7 48 0 4 213 chain 9091 chr10 135534747 + 45771793 45772123 LTR19-int 1103 - 69 319 165115 18 79 49 45 1 0 17 2 0 5 79 39 35 1 0 4 2 0 17 4 1 8 1 0 12 chain 45133 chr10 135534747 + 45772148 45772679 L1PA4 6152 + 5621 6150 62889 391 1 0 4 2 1 133 chain 27674 chr10 135534747 + 45774423 45774751 LTR3 431 + 94 423 94135 250 0 1 78 chain 35291 chr10 135534747 + 45781907 45782346 LTR3 431 + 0 424 75805 168 19 4 252 chain 23533 chr10 135534747 + 45782570 45783013 LTR19A 502 - 0 502 112946 63 11 9 84 73 72 15 2 76 30 11 0 115 5 4 34 chain 42455 chr10 135534747 + 45783013 45783650 PABL_A 660 + 31 660 66071 370 67 57 37 0 1 69 5 4 4 0 1 42 6 7 37 chain 17611 chr10 135534747 + 45783746 45784006 MER41A 554 - 279 543 133964 106 0 3 34 1 0 39 4 5 16 10 11 50 chain 42553 chr10 135534747 + 45786835 45787389 MER41A 554 - 0 554 65960 330 15 21 7 6 0 196 chain 448374 chr10 135534747 + 45790697 45796736 L1PA8 5853 - 6 5748 8804 87 1 0 19 2 1 50 1 0 7 6 5 70 2 0 42 1 0 50 0 1 36 0 1 4 1 0 462 0 3 467 336 0 251 0 1 74 0 8 207 0 1 7 0 9 763 0 1 228 0 1 109 2 1 10 4 1 13 11 66 55 0 2 23 0 1 104 4 0 49 0 1 240 0 5 105 0 1 174 4 7 40 21 0 122 14 22 174 21 8 7 1 0 127 0 1 78 3 1 10 4 7 881 1 3 231 28 11 73 0 1 122 chain 140399 chr10 135534747 + 45813017 45814582 L1PA4 6152 - 6 1572 26087 915 0 1 650 chain 474761 chr10 135534747 + 45822185 45829531 L1PA7 6471 - 4 6471 7888 143 0 1 35 13 12 244 0 100 1592 3 0 400 5 6 50 0 1 352 3 2 32 1385 1 223 38 48 481 29 45 55 40 16 174 0 1 199 0 1 144 0 387 241 0 1 523 8 21 530 1 2 191 3 0 6 4 8 199 chain 76151 chr10 135534747 + 45825540 45826408 SVA_D 2077 - 11 2071 45392 623 4 5 35 0 1197 188 6 0 12 chain 31174 chr10 135534747 + 45831975 45832415 MLT2A1 477 + 0 470 82213 168 22 17 108 1 2 87 18 52 36 chain 359621 chr10 135534747 + 45832418 45836925 HERVL-int 5654 + 0 4523 11367 79 0 1 69 15 10 114 0 9 61 0 3 291 9 8 17 3 1 127 0 1 333 1 0 53 0 1 119 123 129 322 2 3 897 0 2 1755 0 1 117 chain 373083 chr10 135534747 + 45836934 45841271 L1P1 4361 + 1 4341 10990 1441 0 2 866 0 4 1369 0 1 133 1 0 333 1 0 155 2 1 22 2 1 12 chain 142450 chr10 135534747 + 45841654 45844653 SVA_A 1864 + 28 1862 25734 464 268 0 193 481 61 15 0 36 89 1 0 24 3 0 40 2 0 143 3 0 22 195 0 29 35 0 167 274 0 551 chain 16661 chr10 135534747 + 45842137 45842386 SVA_A 1864 + 627 1090 82550 75 0 223 22 3 0 36 4 1 28 12 9 69 chain 2260 chr10 135534747 + 45843551 45843597 SVA_A 1864 + 776 820 156745 27 2 0 17 chain 1006 chr10 135534747 + 45843631 45843661 SVA_A 1864 + 783 813 82155 30 chain 7843 chr10 135534747 + 45843828 45844062 SVA_A 1864 + 979 1053 82155 1 160 0 73 chain 8534 chr10 135534747 + 45843829 45843989 SVA_A 1864 + 1201 1238 120335 6 130 7 24 chain 2393 chr10 135534747 + 45843845 45843872 SVA_A 1864 + 993 1020 234266 27 chain 133748 chr10 135534747 + 45844666 45846206 L1PA4 6152 + 4641 6151 27267 263 30 0 1247 chain 269804 chr10 135534747 + 45854204 45857607 L1P2 5180 + 2 3398 15187 147 2 1 39 6 5 53 6 5 263 1 0 48 1 0 224 1 0 6 2 1 190 0 1 82 9 10 160 1 0 485 1 0 458 0 1 25 0 2 62 0 13 36 18 0 864 1 0 31 1 2 41 0 3 23 1 0 115 chain 477612 chr10 135534747 + 45857617 45863613 L1PA6 6164 + 2 6159 7810 105 91 78 12 4 5 307 2 1 48 1 0 128 12 5 57 0 128 59 0 26 214 84 94 76 9 19 1826 0 2 2120 0 4 172 0 2 669 chain 522268 chr10 135534747 + 45883273 45891065 L1PA5 6144 + 3 6144 4930 150 10 26 207 0 95 484 3 0 62 0 1 185 2 1 1061 1 0 34 0 4 942 1761 0 418 1 0 9 0 1 577 1 0 294 0 1 1577 2 1 11 chain 141587 chr10 135534747 + 45886501 45888170 SVA_D 2077 + 0 2077 25885 19 5 0 591 13 11 65 0 40 84 24 0 80 0 396 29 0 1 30 2 0 39 12 16 676 chain 23363 chr10 135534747 + 45897289 45897554 AluY 311 + 37 302 113850 265 chain 46443 chr10 135534747 + 45902874 45903457 PRIMA4_LTR 623 - 8 623 61643 232 1 0 116 0 8 59 3 26 54 1 3 117 chain 42015 chr10 135534747 + 45906248 45906876 MER41B 635 - 0 635 66604 49 9 10 10 12 17 40 0 1 37 38 37 303 8 9 122 chain 218393 chr10 135534747 + 45908488 45910929 L1PA5 6144 + 3579 6030 17977 768 0 4 203 0 1 19 0 1 716 0 4 735 chain 8934 chr10 135534747 + 45910932 45911035 L1PA5 6144 + 6039 6142 165956 103 chain 44891 chr10 135534747 + 45932848 45933465 LTR10E 629 + 0 629 63187 18 25 41 105 0 2 130 2 1 27 12 11 44 1 0 189 2 0 55 1 0 6 chain 19387 chr10 135534747 + 45933470 45933727 L1PA17 2846 - 1333 1583 128985 111 10 3 136 chain 28766 chr10 135534747 + 45945036 45945342 AluYg6 310 - 4 310 90042 306 chain 21829 chr10 135534747 + 45947193 45947544 MER51B 395 - 0 395 120904 19 3 11 30 0 4 74 31 31 114 23 55 57 chain 113751 chr10 135534747 + 45975265 45976855 THE1B-int 1605 + 0 1599 33162 17 0 1 290 0 8 116 68 76 93 1 0 34 5 4 37 3 0 12 11 10 55 37 36 806 1 0 4 chain 33844 chr10 135534747 + 45983923 45984397 LTR3A 482 + 3 482 77862 105 13 0 52 7 16 169 1 8 45 5 6 4 0 1 73 chain 6212 chr10 135534747 + 45993378 45993456 MLT1B 390 + 312 390 183480 78 chain 3413 chr10 135534747 + 45999197 45999294 L1MB7 1623 + 1444 1532 216880 7 4 0 27 1 0 11 1 0 4 20 20 5 3 0 14 chain 22538 chr10 135534747 + 45999622 45999900 AluSp 311 + 11 290 117854 125 7 8 146 chain 155040 chr10 135534747 + 46006863 46008669 SVA_D 2077 + 42 2059 23976 502 40 0 161 0 1 3 0 6 47 40 0 155 0 137 132 12 61 56 0 98 658 chain 3761 chr10 135534747 + 46032071 46032145 L1MB8 1703 + 837 907 210947 24 10 8 25 2 0 13 chain 310364 chr10 135534747 + 46033515 46037027 L1PA4 6152 + 1736 6151 12989 287 0 1 516 4 3 638 1 0 215 0 764 6 0 5 177 0 4 243 2 0 156 5 0 83 0 138 703 1 0 363 0 1 112 chain 107986 chr10 135534747 + 46062542 46065023 L1MA1 4479 - 289 1891 34722 18 6 0 7 30 23 30 7 5 29 1 0 126 3 0 4 1 0 21 1 2 66 1 0 6 0 1 4 5 3 19 1 0 71 1 0 16 2 0 24 1 0 13 7 0 125 0 1 57 2 0 130 3 0 107 3 5 9 6 3 14 1 0 93 2 0 173 2 0 17 829 0 10 1 0 92 1 0 9 11 10 20 1 2 21 1 0 33 2 0 96 9 8 65 1 0 14 chain 25524 chr10 135534747 + 46066621 46067005 LTR7 482 + 0 469 102119 101 15 14 17 0 51 41 5 37 44 0 1 61 0 1 51 13 14 36 chain 203106 chr10 135534747 + 46067018 46070053 HERVH-int 3825 + 0 2974 18984 316 29 28 20 15 16 30 11 10 26 132 142 18 7 0 8 1 0 11 88 88 15 0 38 12 1 0 137 15 0 191 1 0 130 101 18 44 1 0 131 9 0 41 1 0 41 2 1 267 0 1 159 11 19 128 4 9 145 1 0 7 1 2 181 6 4 27 5 6 325 1 0 182 chain 5753 chr10 135534747 + 46068235 46068310 HERVH-int 3825 + 265 339 187617 68 1 0 6 chain 28991 chr10 135534747 + 46086274 46086703 LTR7B 505 + 0 497 89029 10 0 2 93 0 10 60 0 38 12 3 27 26 0 2 73 17 9 26 0 1 52 15 14 42 chain 108492 chr10 135534747 + 46096025 46097385 LTR12C 1709 + 0 1707 34564 18 0 14 151 0 3 76 17 27 10 8 0 165 0 1 185 0 278 143 0 47 106 0 4 330 1 0 63 12 11 75 chain 5791 chr10 135534747 + 46100125 46100347 L1MC3 1789 - 401 584 187247 15 1 0 39 34 23 28 84 57 21 chain 23086 chr10 135534747 + 46125897 46126184 AluY 311 + 0 293 115213 55 0 4 112 0 3 22 1 0 97 chain 5425 chr10 135534747 + 46157513 46157588 MLT1A 405 + 329 405 190752 32 1 2 42 chain 272473 chr10 135534747 + 46163720 46167280 L1PA6 6164 + 1888 6162 15048 306 9 4 7 0 491 493 0 1 57 15 33 242 0 1 816 322 516 7 0 5 451 0 4 510 1 0 91 1 0 224 0 7 8 chain 18145 chr10 135534747 + 46183191 46183611 L1PB1 5432 - 14 393 132473 13 2 1 13 1 0 21 1 0 24 2 0 8 7 6 5 2 0 19 16 6 6 2 0 16 1 0 43 20 20 13 1 2 29 21 16 9 2 1 11 1 0 11 1 0 8 2 0 14 11 0 64 chain 53254 chr10 135534747 + 46184750 46185449 L1PB 1623 + 679 1363 56856 108 1 0 153 2 1 360 13 0 62 chain 41704 chr10 135534747 + 46241218 46241666 L1PA2 6032 - 1 449 67020 448 chain 27418 chr10 135534747 + 46313466 46313806 LTR14A 344 - 0 344 94913 74 4 8 262 chain 53673 chr10 135534747 + 46331617 46332316 L1PB 1623 - 260 944 56564 62 13 0 360 2 1 158 1 0 103 chain 11948 chr10 135534747 + 46333546 46333876 L1PB1 5432 + 5116 5418 152414 9 1 0 11 1 0 7 36 30 29 1 2 13 20 20 44 1 0 15 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 138980 chr10 135534747 + 46360233 46361863 SVA_C 1631 - 0 1631 26309 17 4 0 237 0 1 372 0 1 99 2 5 20 26 28 121 6 5 200 1 0 504 8 8 13 chain 19276 chr10 135534747 + 46368383 46368620 AluSp 311 + 62 297 129302 67 2 0 168 chain 21453 chr10 135534747 + 46375289 46375534 AluSp 311 + 46 291 122319 245 chain 21783 chr10 135534747 + 46484809 46485084 AluY 311 + 18 301 121088 22 1 0 4 0 9 70 1 0 9 0 1 168 chain 153355 chr10 135534747 + 46545651 46547319 L1PA3long 6157 + 4484 6157 24176 10 0 1 815 0 4 843 chain 2947 chr10 135534747 + 46613001 46613032 U2 167 + 0 31 226126 31 chain 8669 chr10 135534747 + 46683796 46683908 MER57B1 401 + 171 303 167369 53 0 20 59 chain 108193 chr10 135534747 + 46684516 46686489 MER57-int 2662 - 1 1629 34650 5 1 0 31 3 0 27 9 19 23 3 0 7 1 0 4 8 6 13 36 22 40 72 58 71 1 0 12 5 1 34 0 1 169 9 8 160 308 2 32 0 2 5 0 1 9 0 1 42 0 2 12 17 0 303 0 1 89 8 10 35 1 0 74 1 0 18 0 3 174 8 9 93 chain 30697 chr10 135534747 + 46705711 46706143 MER4A1 472 + 1 458 83045 180 0 3 34 36 58 182 chain 35960 chr10 135534747 + 46706508 46706966 LTR2 463 + 0 463 74943 55 0 3 241 8 9 54 12 13 88 chain 24663 chr10 135534747 + 46720130 46720429 AluY 311 + 4 304 106652 128 0 1 171 chain 49377 chr10 135534747 + 46721972 46722593 L1PB 1623 - 325 944 59463 357 2 1 158 1 0 103 chain 16856 chr10 135534747 + 46723731 46724151 L1PB1 5432 + 5039 5418 135956 60 15 6 11 4 0 9 1 0 11 1 0 7 36 30 29 1 2 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 11159 chr10 135534747 + 46734427 46734670 THE1D 372 - 12 227 155600 69 0 2 26 38 0 24 43 51 43 chain 40325 chr10 135534747 + 46802936 46803459 MLT2A2 560 + 0 560 68846 71 0 1 34 0 2 89 6 7 55 0 22 121 0 11 147 chain 12244 chr10 135534747 + 46825199 46825362 L1M1 2793 + 1498 1660 151229 57 2 0 69 0 1 35 chain 26639 chr10 135534747 + 46833166 46833482 AluY 311 + 0 311 97513 126 5 0 185 chain 25116 chr10 135534747 + 46848544 46848839 AluYk4 311 - 15 306 104194 172 5 1 118 chain 13428 chr10 135534747 + 46870274 46870446 MER107 203 - 19 200 146590 13 3 12 156 chain 26939 chr10 135534747 + 46875305 46875595 AluYa5 310 - 11 301 96492 290 chain 8556 chr10 135534747 + 46892416 46892939 MER30 238 + 0 238 167983 18 57 56 25 307 28 12 1 0 24 2 1 35 6 3 36 chain 21667 chr10 135534747 + 46893003 46893256 AluSp 311 + 6 259 121512 253 chain 6500 chr10 135534747 + 46930424 46930500 MLT1F1 559 - 131 207 181243 76 chain 28326 chr10 135534747 + 46932800 46933200 L1MB8 1703 - 118 520 91846 52 0 3 34 0 4 57 2 1 10 2 1 135 0 2 5 3 1 28 3 0 69 chain 25923 chr10 135534747 + 46950738 46951051 AluY 311 + 2 298 100325 116 18 0 14 0 1 165 chain 22621 chr10 135534747 + 47006926 47007318 THE1D 372 - 2 372 117483 93 2 1 6 20 0 45 1 0 25 17 19 45 1 5 26 0 1 25 9 10 16 9 0 21 1 0 17 0 2 13 chain 5556 chr10 135534747 + 47015634 47015702 L1PB4 2604 - 149 217 189509 68 chain 79999 chr10 135534747 + 47015971 47016902 L1PA5 6144 - 1 949 43593 8 5 0 137 8 11 545 0 15 132 0 4 96 chain 78301 chr10 135534747 + 47051910 47052778 L1PA4 6152 - 1 877 44375 148 0 7 701 0 1 19 chain 16383 chr10 135534747 + 47067423 47067689 MER57-int 2662 - 2369 2622 137250 117 0 6 62 1 0 9 47 29 30 chain 25479 chr10 135534747 + 47073054 47073374 MER57B1 401 - 70 394 102321 122 0 1 121 0 2 73 0 1 4 chain 5184 chr10 135534747 + 47097977 47098036 MLT1A0 366 + 266 325 193203 59 chain 45598 chr10 135534747 + 47128699 47129301 LTR71B 605 + 0 605 62406 137 16 11 38 0 6 162 1 0 92 9 10 22 0 2 125 chain 27422 chr10 135534747 + 47180313 47180648 LTR14A 344 - 0 344 94901 41 0 1 251 0 8 43 chain 52111 chr10 135534747 + 47202326 47203024 L1PB 1623 - 260 944 57553 54 20 7 361 2 1 15 1 2 141 1 0 103 chain 17665 chr10 135534747 + 47204163 47204588 L1PB1 5432 + 5039 5418 133786 64 16 0 14 2 0 8 1 0 11 1 0 7 36 30 29 1 2 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 40325 chr10 135534747 + 47283755 47284278 MLT2A2 560 + 0 560 68845 71 0 1 34 0 2 89 6 7 55 0 22 121 0 11 147 chain 12244 chr10 135534747 + 47306000 47306163 L1M1 2793 + 1498 1660 151228 57 2 0 69 0 1 35 chain 26529 chr10 135534747 + 47313970 47314286 AluY 311 + 0 310 97936 126 6 0 184 chain 25412 chr10 135534747 + 47329334 47329630 AluYk4 311 - 14 306 102626 173 5 1 118 chain 13428 chr10 135534747 + 47351075 47351247 MER107 203 - 19 200 146589 13 3 12 156 chain 7410 chr10 135534747 + 47374913 47375026 MER30 238 + 129 238 174704 34 2 1 35 6 3 36 chain 4247 chr10 135534747 + 47412525 47412569 MLT1F1 559 - 163 207 203914 44 chain 107953 chr10 135534747 + 47531106 47533083 MER57-int 2662 + 1033 2661 34732 93 8 9 180 0 3 12 1 0 74 1 0 35 8 10 89 0 1 302 17 0 13 0 2 42 0 1 9 0 1 5 0 2 32 312 2 160 9 8 172 0 1 37 5 1 6 1 0 71 72 58 40 36 22 13 8 6 4 1 0 7 3 0 23 9 19 27 3 0 31 1 0 5 chain 28718 chr10 135534747 + 47532028 47532331 AluYa5 310 - 7 310 90254 303 chain 5007 chr10 135534747 + 47536818 47536893 L1PB1 5432 + 5357 5427 195049 13 1 0 21 1 0 13 1 0 18 2 0 5 chain 26137 chr10 135534747 + 47538725 47539024 AluY 311 + 7 307 99449 119 0 1 180 chain 76912 chr10 135534747 + 47549436 47550420 L1PA7 6471 - 67 1020 45018 10 36 0 17 0 2 222 4 6 161 0 1 263 5 0 18 0 1 9 0 1 74 1 4 164 chain 5066 chr10 135534747 + 47562028 47562160 L1MB1 2102 + 1382 1526 194462 18 1 0 4 2 8 11 39 46 57 chain 27038 chr10 135534747 + 47572180 47572512 AluYk4 311 + 0 311 96152 126 21 0 185 chain 28508 chr10 135534747 + 47580145 47580576 MER4A1 472 + 2 458 91158 179 69 94 183 chain 35735 chr10 135534747 + 47580941 47581399 LTR2 463 + 0 463 75215 55 0 3 241 8 9 54 12 13 88 chain 29648 chr10 135534747 + 47640765 47641108 LTR14A 344 + 0 344 86081 166 0 1 177 chain 20779 chr10 135534747 + 47705914 47706152 AluSp 311 + 32 302 124682 23 0 32 215 chain 11281 chr10 135534747 + 47706853 47707096 THE1D 372 + 145 360 155125 43 43 51 19 38 0 31 0 2 69 chain 16090 chr10 135534747 + 47717392 47717846 L1PB1 5432 - 14 393 138087 13 2 1 13 1 0 21 1 0 24 2 0 8 14 11 19 19 8 4 1 0 16 1 0 43 20 20 13 1 2 29 36 30 7 1 0 11 1 0 9 60 13 64 chain 52864 chr10 135534747 + 47718991 47719685 L1PB 1623 + 684 1363 57093 103 1 0 153 2 1 365 13 0 57 chain 27536 chr10 135534747 + 47741343 47741678 LTR14A 344 + 0 344 94551 46 0 8 248 0 1 41 chain 40954 chr10 135534747 + 47902333 47902777 L1PA2 6032 - 5 449 67971 444 chain 164696 chr10 135534747 + 47970403 47972275 L1PA4 6152 + 4253 6138 22703 578 1 10 460 0 1 17 0 1 497 0 1 164 1 2 21 1 0 33 0 1 99 chain 7088 chr10 135534747 + 47983706 47983796 MER70A 477 + 382 472 176842 90 chain 26116 chr10 135534747 + 47988685 47988985 AluYk4 311 - 12 311 99549 173 1 0 126 chain 27210 chr10 135534747 + 47991526 47991894 THE1B 368 + 0 368 95564 15 2 0 25 5 10 122 2 1 27 2 0 168 chain 275120 chr10 135534747 + 47993031 47996167 L1PA5 6144 - 15 3153 14917 830 0 5 298 2 0 1717 1 0 288 chain 14447 chr10 135534747 + 47996167 47996326 L1PA5 6144 + 2831 2990 142490 159 chain 13964 chr10 135534747 + 48006571 48006743 Tigger3a 397 - 86 258 144696 172 chain 51122 chr10 135534747 + 48030196 48030794 L1PA7 6471 + 5868 6468 58235 365 0 4 86 0 1 130 3 0 14 chain 26184 chr10 135534747 + 48050636 48051011 THE1C 375 - 0 375 99264 25 1 0 155 6 5 12 0 1 23 16 0 10 0 17 127 chain 23895 chr10 135534747 + 48124429 48124715 AluSp 311 + 9 311 110927 51 0 16 235 chain 40325 chr10 135534747 + 48145093 48145616 MLT2A2 560 - 0 560 68847 147 0 11 121 0 22 55 6 7 89 0 2 34 0 1 71 chain 17665 chr10 135534747 + 48224762 48225187 L1PB1 5432 - 14 393 133787 13 2 1 13 1 0 21 1 0 24 2 0 8 7 6 5 2 0 19 19 8 4 1 0 16 1 0 43 20 20 13 1 2 29 36 30 7 1 0 11 1 0 8 2 0 14 16 0 64 chain 52566 chr10 135534747 + 48226331 48227025 L1PB 1623 + 684 1363 57257 103 1 0 153 2 1 361 20 7 54 chain 27422 chr10 135534747 + 48248701 48249036 LTR14A 344 + 0 344 94900 46 0 8 248 0 1 41 chain 445344 chr10 135534747 + 48305091 48311764 L1PA6 6164 + 3 6162 8892 163 92 102 48 185 10 30 22 0 4 5 0 8 7 4 22 18 18 37 19 0 58 52 47 12 85 8 166 25 5 47 1 18 31 4 0 105 7 27 4 1 0 28 0 1 40 4 5 4 1 0 133 4 7 865 29 10 121 0 2 55 8 1 82 0 3 139 0 15 689 8 8 4 0 1 50 15 19 178 12 14 251 12 13 1059 0 1 114 0 71 25 1 2 110 2 1 5 0 6 204 322 3 41 6 5 32 0 2 192 0 2 377 0 2 193 chain 46376 chr10 135534747 + 48346104 48346792 L1PA11 4918 + 3851 4567 61702 167 0 1 39 0 9 25 3 4 55 14 52 128 1 0 62 2 1 13 2 0 67 2 0 15 1 0 19 4 0 9 10 5 13 8 4 15 1 0 13 chain 17281 chr10 135534747 + 48351287 48351607 THE1C 375 + 23 335 134831 21 45 42 22 4 11 67 22 12 109 3 1 27 chain 56582 chr10 135534747 + 48351664 48352478 THE1C-int 1605 + 18 883 54801 102 0 50 270 5 12 78 0 1 100 0 2 59 78 69 122 chain 4702 chr10 135534747 + 48451325 48451680 MLT1E1A 663 + 204 616 198509 42 2 0 6 73 105 15 186 213 31 chain 22023 chr10 135534747 + 48498487 48498728 L1PA3long 6157 - 0 241 120130 241 chain 17231 chr10 135534747 + 48525546 48525871 THE1B 368 - 34 356 134977 22 7 6 66 14 12 13 34 41 5 1 0 55 13 7 95 chain 68775 chr10 135534747 + 48528614 48529375 L1PA3long 6157 - 0 763 48908 7 0 1 330 0 1 424 chain 83865 chr10 135534747 + 48568325 48569359 MER11B 1079 + 23 1064 41963 220 4 16 360 1 2 151 8 2 290 chain 28583 chr10 135534747 + 48572113 48572604 LTR12_ 688 - 210 688 90811 65 23 6 31 1 5 10 26 29 5 3 0 40 39 40 60 1 0 187 chain 3366 chr10 135534747 + 48598653 48598692 MIR 256 + 104 143 217733 39 chain 5559 chr10 135534747 + 48599752 48599816 LTR12F 595 + 531 595 189491 64 chain 7714 chr10 135534747 + 48606870 48606967 MER57F 435 + 57 154 172840 97 chain 9366 chr10 135534747 + 48616186 48616309 MLT1A0-int 1658 - 1535 1658 163729 105 1 0 4 0 1 13 chain 9834 chr10 135534747 + 48643119 48643538 LTR12 884 - 210 786 161428 24 231 249 24 2 0 29 28 12 51 1 158 29 chain 3458 chr10 135534747 + 48643326 48643374 LTR12 884 - 483 529 201996 23 2 0 23 chain 21783 chr10 135534747 + 48672151 48672426 AluY 311 + 18 301 121087 22 1 0 4 0 9 70 1 0 9 0 1 168 chain 154502 chr10 135534747 + 48732566 48734238 L1PA3long 6157 + 4484 6157 24047 10 0 1 1662 chain 9570 chr10 135534747 + 48764834 48764952 MSTB1-int 1597 + 0 118 162738 118 chain 2947 chr10 135534747 + 48799929 48799960 U2 167 + 0 31 226125 31 chain 7987 chr10 135534747 + 48859037 48859212 MER33 330 - 132 320 171132 40 2 0 31 53 68 49 chain 8669 chr10 135534747 + 48870697 48870809 MER57B1 401 + 171 303 167368 53 0 20 59 chain 108549 chr10 135534747 + 48871417 48873402 MER57-int 2662 - 1 1629 34549 5 1 0 31 3 0 27 9 19 23 3 0 7 1 0 4 8 6 13 36 22 40 72 58 71 1 0 13 4 0 34 0 1 169 9 8 160 320 2 32 0 2 5 0 1 9 0 1 42 0 2 12 17 0 303 0 1 89 8 10 35 1 0 74 1 0 18 0 3 174 8 9 93 chain 28608 chr10 135534747 + 48892246 48892678 MER4A1 472 + 1 458 90705 180 69 94 183 chain 35829 chr10 135534747 + 48893043 48893501 LTR2 463 + 0 463 75094 55 0 3 241 8 9 54 12 13 88 chain 49002 chr10 135534747 + 48911744 48912365 L1PB 1623 - 325 944 59749 357 2 1 158 1 0 103 chain 16856 chr10 135534747 + 48913503 48913923 L1PB1 5432 + 5039 5418 135955 60 15 6 11 4 0 9 1 0 11 1 0 7 36 30 29 1 2 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 11159 chr10 135534747 + 48924200 48924443 THE1D 372 - 12 227 155599 69 0 2 26 38 0 24 43 51 43 chain 40120 chr10 135534747 + 48992681 48993204 MLT2A2 560 + 0 560 69156 71 0 1 34 0 2 89 6 7 55 0 22 121 0 11 147 chain 12244 chr10 135534747 + 49014945 49015108 L1M1 2793 + 1498 1660 151227 57 2 0 69 0 1 35 chain 26620 chr10 135534747 + 49022912 49023229 AluY 311 + 0 311 97592 126 6 0 185 chain 24138 chr10 135534747 + 49038314 49038596 AluYk4 311 - 28 306 109534 159 5 1 118 chain 13428 chr10 135534747 + 49060026 49060198 MER107 203 - 19 200 146588 13 3 12 156 chain 26939 chr10 135534747 + 49065057 49065347 AluYa5 310 - 11 301 96491 290 chain 8505 chr10 135534747 + 49082167 49082690 MER30 238 + 0 238 168264 18 57 56 25 310 30 34 2 1 35 6 3 36 chain 21667 chr10 135534747 + 49082754 49083007 AluSp 311 + 6 259 121511 253 chain 30436 chr10 135534747 + 49091943 49092261 AluYb8 318 + 0 318 83558 318 chain 27994 chr10 135534747 + 49206450 49206785 LTR14A 344 - 0 344 93018 41 0 1 251 0 8 43 chain 5972 chr10 135534747 + 49215259 49215344 LTR47A 437 - 338 428 185499 50 1 6 34 chain 53736 chr10 135534747 + 49228446 49229142 L1PB 1623 - 263 944 56511 54 13 0 365 2 1 158 1 0 103 chain 68399 chr10 135534747 + 49229466 49230709 L1PB1 5432 + 3784 5418 49091 20 10 13 149 35 36 453 12 23 53 0 1 76 105 508 9 1 0 11 1 0 7 36 30 28 2 3 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 9570 chr10 135534747 + 49285365 49285483 MSTB1-int 1597 + 0 118 162737 118 chain 2947 chr10 135534747 + 49320446 49320477 U2 167 + 0 31 226124 31 chain 28689 chr10 135534747 + 49394398 49394753 THE1A 353 + 0 353 90374 109 2 1 92 1 0 151 chain 20260 chr10 135534747 + 49400352 49400652 AluSp 311 + 10 301 126345 62 13 8 52 1 0 5 5 8 5 3 0 97 3 0 54 chain 6627 chr10 135534747 + 49406505 49406583 MER101 471 + 0 78 180257 78 chain 28838 chr10 135534747 + 49406583 49406977 L1P4 1494 - 659 1047 89727 51 3 0 250 2 0 33 11 10 44 chain 99116 chr10 135534747 + 49428169 49429616 L1PB1 5432 + 4005 5422 36994 622 25 22 147 8 0 9 1 9 275 4 14 12 24 15 4 1 0 11 1 0 13 20 14 48 2 1 16 1 0 43 1 0 16 1 0 6 14 6 18 3 1 5 1 0 14 2 0 20 6 5 20 1 0 13 1 0 18 chain 7223 chr10 135534747 + 49437374 49437642 MER34B-int 733 + 374 612 175927 8 23 0 89 132 125 16 chain 65991 chr10 135534747 + 49485941 49486925 L1PA14 3548 - 63 1008 50104 20 1 0 10 6 0 41 1 0 21 1 0 15 4 2 33 26 17 48 0 1 25 0 1 32 6 5 77 1 0 6 2 0 5 1 0 16 4 0 105 2 0 5 8 6 41 2 0 14 3 1 22 1 0 228 1 0 88 2 0 60 chain 23379 chr10 135534747 + 49487459 49487802 THE1B 368 - 12 368 113764 54 0 2 5 2 1 96 2 0 17 10 9 98 15 30 44 chain 22289 chr10 135534747 + 49488884 49489190 L1PA8 5853 - 4 303 118954 89 1 0 19 2 1 50 8 7 4 1 0 71 2 0 46 1 0 12 chain 40657 chr10 135534747 + 49489217 49489778 THE1B-int 1605 - 1059 1605 68355 90 1 26 117 44 4 309 chain 25780 chr10 135534747 + 49489780 49490135 THE1B 368 - 2 368 100966 73 7 6 89 2 0 26 1 0 117 0 15 40 chain 5375 chr10 135534747 + 49502924 49503009 Tigger3c 601 + 440 526 191252 46 9 10 30 chain 12883 chr10 135534747 + 49524278 49524491 Tigger3a 397 + 158 375 148694 80 0 28 9 3 5 15 26 0 80 chain 34589 chr10 135534747 + 49538577 49538997 LTR71A 459 - 0 420 76771 420 chain 33879 chr10 135534747 + 49542778 49543222 LTR71A 459 - 14 459 77812 82 2 1 15 0 2 5 6 4 179 0 2 155 chain 88180 chr10 135534747 + 49554164 49555193 LTR13 1007 + 0 1007 40309 425 12 5 258 15 0 319 chain 124887 chr10 135534747 + 49555446 49556924 L1PA7 6471 - 5 1494 29427 568 0 1 102 8 10 27 0 3 131 0 4 274 6 7 362 chain 202318 chr10 135534747 + 49556925 49559305 L1PA7 6471 + 2564 4955 19039 68 5 0 62 0 2 167 0 1 31 0 3 198 0 4 449 0 4 276 1 0 428 1 0 4 0 1 12 0 2 573 0 1 105 chain 416515 chr10 135534747 + 49580263 49585413 L1PA7 6471 + 1300 6469 9624 454 7 0 171 3 0 20 1 0 55 5 6 103 1 0 393 8 0 139 22 4 36 0 10 133 5 11 261 0 4 198 13 14 183 0 2 47 0 4 634 2 1 74 1 0 4 0 1 295 1 0 20 1 5 92 0 4 45 5 0 465 0 1 284 0 5 142 1 4 122 1 0 59 0 3 9 0 11 303 0 1 181 4 11 135 2 0 10 chain 4233 chr10 135534747 + 49625990 49626096 MER58A 224 - 10 119 204131 14 1 0 4 5 7 24 26 28 32 chain 3752 chr10 135534747 + 49676610 49676660 MLT1D 503 + 405 455 211108 50 chain 9056 chr10 135534747 + 49691295 49691420 MER85 139 + 2 139 165284 92 3 15 30 chain 3985 chr10 135534747 + 49700897 49700943 MADE1 96 + 50 96 207611 46 chain 78110 chr10 135534747 + 49738306 49739456 L1PB1 5432 + 4310 5423 44456 316 3 0 257 2 0 215 18 16 19 2 1 10 1 0 12 20 14 50 2 1 16 2 1 16 0 1 26 1 0 13 2 1 5 2 0 8 9 0 18 17 14 6 2 0 24 1 0 22 1 0 26 1 0 5 chain 32661 chr10 135534747 + 49740533 49740904 L1PA5 6144 - 0 370 79746 259 1 0 111 chain 28437 chr10 135534747 + 49747336 49747635 AluYa5 310 - 11 310 91436 299 chain 208491 chr10 135534747 + 49849453 49851807 L1PA5 6144 + 3794 6144 18607 94 0 1 373 0 8 1415 15 1 428 0 1 29 chain 3576 chr10 135534747 + 49858316 49858366 L1MB5 1630 + 1327 1377 214031 16 1 0 5 0 1 28 chain 27123 chr10 135534747 + 49873340 49873665 LTR17 781 - 457 781 95856 15 10 0 181 0 9 119 chain 91570 chr10 135534747 + 49873979 49875049 HERV17-int 4347 - 0 1071 39103 151 1 2 554 0 1 5 1 0 358 chain 26461 chr10 135534747 + 49891094 49891386 AluYf4 310 + 0 292 98205 292 chain 8778 chr10 135534747 + 49898421 49898743 MER52D 1964 - 4 856 166779 21 1 0 49 141 684 41 14 16 17 14 0 24 chain 3244 chr10 135534747 + 49906841 49906906 MLT2D 439 - 15 94 220126 18 0 1 13 13 26 21 chain 3153 chr10 135534747 + 49943575 49943623 L1MA8 2339 - 134 176 221877 9 6 0 33 chain 45604 chr10 135534747 + 49980590 49981081 L1PA2 6032 - 0 491 62398 491 chain 17692 chr10 135534747 + 49981083 49981270 L1PA2 6032 + 5262 5449 133723 187 chain 4627 chr10 135534747 + 49987652 49987712 MIR 256 + 41 117 199327 19 0 16 41 chain 12653 chr10 135534747 + 50034446 50034603 L1PA10 4194 - 33 186 149634 11 1 0 34 3 0 108 chain 25446 chr10 135534747 + 50070429 50070805 MER1A 529 + 144 519 102476 172 19 27 110 25 16 50 chain 15887 chr10 135534747 + 50071762 50072031 THE1D 372 - 0 270 138690 133 15 14 17 41 42 5 0 1 58 chain 3529 chr10 135534747 + 50111484 50111521 L2a 937 - 542 579 214887 37 chain 22854 chr10 135534747 + 50128308 50128561 L1PA4 6152 + 5888 6141 116313 253 chain 23151 chr10 135534747 + 50179274 50179554 AluY 311 + 15 296 114887 113 3 4 164 chain 28939 chr10 135534747 + 50199006 50199393 MLT2A1 477 - 82 477 89278 10 4 0 161 1 2 22 0 1 27 0 4 25 0 1 96 1 6 40 chain 453306 chr10 135534747 + 50199393 50205339 HERVL-int 5654 - 0 5647 8641 217 0 1 362 15 1 107 0 12 21 1 2 333 7 6 527 11 5 415 3 14 11 4 0 454 7 8 8 0 1 894 12 0 60 0 1 74 0 6 79 1 2 240 1 2 101 0 7 388 2 1 170 1 0 26 334 0 251 0 1 68 0 1 47 0 1 24 1 3 172 4 15 91 0 12 70 0 3 332 chain 32106 chr10 135534747 + 50205346 50205814 MLT2A1 477 - 0 477 80678 53 9 0 9 19 0 10 0 22 177 3 4 28 1 5 26 0 1 96 1 6 21 1 5 14 chain 20388 chr10 135534747 + 50221131 50221457 MER87B 500 + 8 369 125937 48 9 8 116 14 18 51 0 1 24 21 52 43 chain 28977 chr10 135534747 + 50278015 50278326 AluYa5 310 + 0 310 89100 134 1 0 176 chain 13574 chr10 135534747 + 50293781 50293947 L1PA5 6144 + 5980 6144 146075 152 3 1 11 chain 243130 chr10 135534747 + 50333095 50335760 L1PA3long 6157 - 188 2854 16609 858 0 1 1807 chain 15037 chr10 135534747 + 50335760 50335926 L1PA3long 6157 + 5991 6157 141216 166 chain 22619 chr10 135534747 + 50393742 50394010 AluSp 311 + 1 269 117492 268 chain 26986 chr10 135534747 + 50402615 50402985 THE1C 375 - 0 375 96327 25 1 0 137 7 10 18 2 1 43 1 5 136 chain 35934 chr10 135534747 + 50404004 50404448 L1PA5 6144 + 5690 6144 74977 115 0 1 168 4 0 7 4 17 146 chain 8211 chr10 135534747 + 50432302 50432406 MSTB 430 - 18 122 169880 104 chain 11122 chr10 135534747 + 50432851 50433074 MER47A 366 - 113 335 155728 11 4 5 56 3 1 36 50 50 63 chain 487187 chr10 135534747 + 50454276 50459675 L1PA3long 6157 + 620 6152 7473 151 0 135 502 4 0 1800 1 2 1338 0 1 1603 chain 5255 chr10 135534747 + 50484950 50485020 L1PA5 6144 + 6079 6144 192454 59 5 0 6 chain 3398 chr10 135534747 + 50526065 50526102 MLT1C 463 + 351 388 217096 37 chain 6961 chr10 135534747 + 50530228 50530362 MLT2D 439 - 301 439 177739 71 31 36 6 1 0 25 chain 30083 chr10 135534747 + 50548198 50548515 AluYb8 318 - 1 318 84551 317 chain 537297 chr10 135534747 + 50627667 50633815 L1PA5 6144 - 0 6144 3277 235 0 1 1280 1 0 147 0 1 4 1 0 1073 2 4 120 1 0 301 0 1 307 2 0 1727 0 4 159 11 12 342 0 1 386 10 0 39 chain 22409 chr10 135534747 + 50644993 50645365 THE1B 368 + 0 368 118446 26 0 1 150 65 61 68 7 6 56 chain 121226 chr10 135534747 + 50646627 50648187 THE1A-int 1579 - 12 1574 30628 268 4 6 168 4 8 145 0 1 320 1 0 75 5 4 25 7 6 298 2 0 238 chain 27598 chr10 135534747 + 50648192 50648545 THE1A 353 - 0 353 94351 243 1 0 24 4 5 81 chain 123186 chr10 135534747 + 50672035 50673581 THE1B-int 1605 + 34 1605 29981 396 1 26 108 1 0 588 0 1 452 chain 4446 chr10 135534747 + 50675333 50675384 L1ME1 1623 - 362 413 201382 51 chain 8476 chr10 135534747 + 50725504 50725601 MER85 139 - 38 135 168424 97 chain 23677 chr10 135534747 + 50750164 50750534 THE1C 375 - 0 375 112170 25 1 0 165 1 0 46 3 10 20 48 48 61 chain 54313 chr10 135534747 + 50753943 50755169 MER41-int 2638 - 1683 2553 56153 40 0 1 92 8 22 71 0 2 47 1 0 219 1 0 8 1 0 7 3 0 85 346 0 64 4 0 22 34 29 17 2 0 10 9 6 30 31 17 29 0 3 11 16 20 18 chain 27483 chr10 135534747 + 50758900 50759272 LTR8 732 - 356 732 94705 174 1 0 137 0 4 16 13 14 31 chain 25144 chr10 135534747 + 50773824 50774265 L1PA13 3608 + 3136 3548 104040 23 1 0 114 2 0 62 1 0 51 13 10 47 9 5 20 6 5 15 28 21 9 1 0 3 6 0 14 4 1 12 chain 3868 chr10 135534747 + 50781347 50781394 MER51A 677 - 431 478 209338 47 chain 46015 chr10 135534747 + 50795872 50796521 LTR66 600 + 8 600 62030 4 1 0 382 71 0 12 2 0 52 0 16 113 0 1 12 chain 9404 chr10 135534747 + 50844745 50844873 MER85 139 + 1 139 163539 95 4 14 29 chain 163921 chr10 135534747 + 50878235 50880534 L1PB3 3668 - 102 2380 22818 14 0 3 18 5 3 6 0 1 13 3 2 5 0 1 16 21 7 10 0 4 61 15 14 98 1 0 206 0 2 55 0 1 28 16 10 14 5 0 80 8 10 165 1 0 53 1 0 464 0 1 31 5 0 58 3 0 5 13 12 78 2 1 4 0 1 66 1 0 348 1 0 203 0 1 34 0 6 65 chain 3599 chr10 135534747 + 50892997 50893091 MLT2C2 476 + 158 251 213668 35 40 39 19 chain 59511 chr10 135534747 + 50894098 50894958 MER11A 1151 + 0 948 53099 79 0 8 113 1 0 30 1 0 66 0 11 98 12 16 252 15 18 11 3 4 39 0 4 53 8 15 7 5 0 10 1 59 50 1 0 5 chain 533985 chr10 135534747 + 50923000 50929105 L1PA4 6152 + 14 6150 3703 104 9 23 671 0 3 569 0 1 1309 5 0 9 0 5 245 1 0 61 5 6 145 0 1 772 6 7 585 1 15 980 0 1 445 2 0 6 1 3 162 4 0 8 chain 87668 chr10 135534747 + 50937941 50939123 L1PB1 5432 + 4127 5279 40505 78 0 2 413 5 1 28 0 3 53 0 2 169 0 1 221 40 16 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 16 6 5 37 chain 21686 chr10 135534747 + 50942290 50942569 AluSz 310 + 11 289 121445 104 6 8 5 2 0 137 1 0 24 chain 24042 chr10 135534747 + 50956971 50957265 AluSp 311 + 0 292 110105 18 1 0 114 1 0 160 chain 23880 chr10 135534747 + 50995142 50995450 AluSp 311 + 0 300 111025 81 1 0 188 3 1 19 5 0 11 chain 5541 chr10 135534747 + 50998624 50998692 MER4E 760 - 22 89 189650 47 1 0 20 chain 7185 chr10 135534747 + 51005140 51005227 MER4B 649 - 560 647 176177 87 chain 10800 chr10 135534747 + 51035479 51035610 MER107 203 + 7 139 156992 64 0 1 67 chain 21536 chr10 135534747 + 51057005 51057250 AluSp 311 + 46 291 122019 245 chain 42097 chr10 135534747 + 51133846 51134347 LTR10D 510 - 0 505 66500 246 0 2 31 1 0 155 2 5 66 chain 27204 chr10 135534747 + 51217100 51217440 LTR14A 344 - 0 344 95580 74 4 8 262 chain 49377 chr10 135534747 + 51235305 51235926 L1PB 1623 - 325 944 59462 357 2 1 158 1 0 103 chain 11948 chr10 135534747 + 51237156 51237486 L1PB1 5432 + 5116 5418 152413 9 1 0 11 1 0 7 36 30 29 1 2 13 20 20 44 1 0 15 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 138886 chr10 135534747 + 51263846 51265476 SVA_C 1631 - 0 1631 26333 17 4 0 237 0 1 372 0 1 99 2 5 20 26 28 121 6 5 200 1 0 504 8 8 13 chain 19276 chr10 135534747 + 51271850 51272087 AluSp 311 + 62 297 129301 67 2 0 168 chain 21453 chr10 135534747 + 51278754 51278999 AluSp 311 + 46 291 122318 245 chain 23889 chr10 135534747 + 51347055 51347350 AluSc5 308 + 11 305 110967 246 2 1 47 chain 41825 chr10 135534747 + 51355500 51356001 LTR10D 510 - 0 505 66858 241 1 3 35 1 0 155 2 5 66 chain 26072 chr10 135534747 + 51360874 51361311 LTR8 732 + 162 628 99739 143 14 44 84 6 9 41 29 28 14 16 13 90 chain 4383 chr10 135534747 + 51387540 51387594 MER21A 919 - 865 919 202161 54 chain 40590 chr10 135534747 + 51398282 51398845 MER11C 1089 - 35 599 68456 134 1 0 54 0 1 127 0 1 38 1 0 5 0 4 95 6 4 24 36 35 42 chain 28608 chr10 135534747 + 51455189 51455621 MER4A1 472 + 1 458 90704 180 69 94 183 chain 35735 chr10 135534747 + 51455988 51456446 LTR2 463 + 0 463 75214 55 0 3 241 8 9 54 12 13 88 chain 53581 chr10 135534747 + 51474689 51475388 L1PB 1623 - 260 944 56621 62 13 0 360 2 1 158 1 0 103 chain 16959 chr10 135534747 + 51476525 51476945 L1PB1 5432 + 5039 5418 135702 60 15 6 11 4 0 9 1 0 11 1 0 7 6 5 8 2 0 3 2 0 9 6 5 29 1 2 13 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 20458 chr10 135534747 + 51494952 51495185 AluSg7 307 + 32 266 125737 99 0 1 134 chain 28554 chr10 135534747 + 51500530 51500870 LTR14A 344 - 0 344 90941 180 3 7 157 chain 50456 chr10 135534747 + 51512569 51513173 L1PA10 4194 + 3561 4161 58677 555 7 4 30 1 0 11 chain 25945 chr10 135534747 + 51524044 51524318 AluYb8 318 - 10 284 100229 274 chain 31541 chr10 135534747 + 51540802 51541205 LTR7C 471 + 0 408 81582 105 4 7 257 0 2 37 chain 31685 chr10 135534747 + 51541416 51541861 MER4A1 472 - 0 472 81345 24 6 10 192 0 2 5 1 20 13 4 0 6 1 5 168 13 15 12 chain 4245 chr10 135534747 + 51554407 51554454 LTR54 533 - 0 47 203941 47 chain 6448 chr10 135534747 + 51557636 51557789 L1MB3 1562 - 84 211 181648 36 43 17 4 1 0 10 4 5 55 chain 79928 chr10 135534747 + 51595417 51596455 MER11C 1089 + 1 1054 43630 101 0 4 111 2 0 29 0 9 58 0 4 25 1 0 190 36 35 24 6 4 95 0 4 5 1 0 38 0 1 127 0 1 54 1 0 134 chain 2829 chr10 135534747 + 51597923 51597968 L1MB3 1562 - 10 54 228225 26 3 2 16 chain 18677 chr10 135534747 + 51602330 51602588 AluSp 311 + 62 311 131004 67 2 0 84 1 0 5 11 5 88 chain 4383 chr10 135534747 + 51607156 51607210 MER21A 919 + 0 54 202160 54 chain 26072 chr10 135534747 + 51633442 51633879 LTR8 732 - 104 570 99740 90 16 13 14 29 28 41 6 9 84 14 44 143 chain 41694 chr10 135534747 + 51638757 51639258 LTR10D 510 + 5 510 67036 66 2 5 155 1 0 35 1 3 241 chain 22058 chr10 135534747 + 51661803 51662092 AluSc 308 + 0 293 119978 15 2 0 110 0 1 27 16 21 119 chain 21453 chr10 135534747 + 51715739 51715984 AluSp 311 - 20 265 122320 245 chain 19276 chr10 135534747 + 51722653 51722890 AluSp 311 - 14 249 129303 171 2 0 64 chain 141096 chr10 135534747 + 51729517 51731108 SVA_C 1631 + 0 1631 25971 13 8 8 187 1 0 319 1 0 332 0 45 99 0 1 610 4 0 17 chain 5543 chr10 135534747 + 51757785 51757849 L1PB1 5432 - 329 393 189625 64 chain 53038 chr10 135534747 + 51759012 51759711 L1PB 1623 + 679 1363 56992 108 1 0 153 2 1 360 13 0 62 chain 12546 chr10 135534747 + 51773226 51773432 LTR47A 437 + 219 424 150058 4 1 0 31 6 0 32 18 24 114 chain 4077 chr10 135534747 + 51818241 51818290 MER5A1 166 + 72 121 206240 49 chain 41310 chr10 135534747 + 51846209 51846653 L1PA2 6032 - 5 449 67520 444 chain 164696 chr10 135534747 + 51915703 51917575 L1PA4 6152 + 4253 6138 22702 578 1 10 460 0 1 17 0 1 497 0 1 164 1 2 21 1 0 33 0 1 99 chain 7088 chr10 135534747 + 51929001 51929091 MER70A 477 + 382 472 176841 90 chain 26669 chr10 135534747 + 51936839 51937192 THE1B 368 + 13 368 97428 27 5 10 122 2 1 27 2 0 168 chain 272158 chr10 135534747 + 51938329 51941461 L1PA5 6144 - 15 3153 15069 830 0 5 298 2 0 769 0 1 202 1 6 739 1 0 109 1 0 22 2 1 156 chain 14456 chr10 135534747 + 51941461 51941620 L1PA5 6144 + 2831 2990 142461 159 chain 12055 chr10 135534747 + 51951862 51952030 Tigger3a 397 - 86 258 151970 21 10 14 137 chain 51802 chr10 135534747 + 51975479 51976076 L1PA7 6471 + 5868 6470 57751 365 0 4 86 0 1 146 chain 26184 chr10 135534747 + 51995927 51996302 THE1C 375 - 0 375 99263 25 1 0 155 6 5 12 0 1 23 16 0 10 0 17 127 chain 40645 chr10 135534747 + 52001325 52001808 L1PA7 6471 + 5986 6470 68378 296 0 3 180 2 0 5 chain 535308 chr10 135534747 + 52022168 52030756 L1PA4 6152 + 13 6143 3548 957 0 2 5 1 0 1197 0 2 306 2471 0 2823 0 4 685 5 11 138 chain 39121 chr10 135534747 + 52056050 52056502 L1PA3long 6157 - 1033 1463 70574 337 22 0 93 chain 94291 chr10 135534747 + 52056506 52057540 L1PA3long 6157 + 5119 6157 38266 185 0 4 849 chain 30103 chr10 135534747 + 52082310 52082623 AluYb8 318 + 0 313 84479 313 chain 5315 chr10 135534747 + 52105373 52105600 Tigger4a 237 + 0 236 191877 19 1 0 9 0 148 10 138 0 50 chain 19111 chr10 135534747 + 52107635 52107937 L1PA8 5853 - 0 313 129789 29 6 7 57 1 0 19 2 1 50 3 2 9 2 1 28 1 18 24 2 0 42 1 0 26 chain 123024 chr10 135534747 + 52109652 52111204 THE1A-int 1579 + 0 1560 30038 261 0 1 185 14 9 148 4 3 32 0 8 466 0 4 190 1 2 251 chain 18794 chr10 135534747 + 52111223 52111538 THE1A 353 + 0 316 130687 44 0 10 9 20 11 16 37 38 74 1 0 114 chain 104236 chr10 135534747 + 52112534 52113676 L1PA4 6152 + 3324 4466 35681 1142 chain 146935 chr10 135534747 + 52113677 52116836 L1PA4 6152 + 4466 6143 25029 1163 1 0 181 1475 0 51 0 1 197 7 0 84 chain 105795 chr10 135534747 + 52115039 52116342 SVA_B 1603 + 3 1603 35305 6 1 0 15 5 29 139 4 5 369 0 39 112 0 241 168 0 1 47 0 2 104 1 0 176 8 1 140 2 0 6 chain 36840 chr10 135534747 + 52125189 52125729 L1PA8 5853 - 0 540 73747 93 1 0 16 2 1 48 2 1 15 1 0 67 9 7 33 9 8 28 0 1 139 0 2 59 3 7 15 chain 5576 chr10 135534747 + 52125803 52126014 L1PA8A 6298 + 5294 5509 92405 195 5 9 11 chain 56607 chr10 135534747 + 52126024 52126724 L1PA7 6471 + 5773 6465 54778 620 0 2 6 6 0 57 4 0 7 chain 3832 chr10 135534747 + 52126724 52126869 L1PA8A 6298 + 5509 5654 92405 145 chain 38012 chr10 135534747 + 52136206 52136636 L1PA5 6144 - 12 442 72115 320 0 1 4 1 0 105 chain 10321 chr10 135534747 + 52178759 52178953 MER44A 345 + 148 345 159030 33 1 4 55 0 4 27 14 15 32 13 9 12 1 0 6 chain 15157 chr10 135534747 + 52184518 52184691 AluSp 311 + 128 301 140886 173 chain 41878 chr10 135534747 + 52184741 52185411 L1PA16 3655 + 2998 3624 66793 50 7 14 18 32 0 12 0 4 104 6 5 26 0 1 58 2 0 285 49 28 21 chain 12411 chr10 135534747 + 52189037 52189208 Tigger3a 397 + 158 326 150598 80 4 1 87 chain 86072 chr10 135534747 + 52205163 52206186 MER11B 1079 + 0 1042 41130 316 1 18 436 1 3 269 chain 8113 chr10 135534747 + 52236127 52236227 MSTA-int 1630 + 21 121 170425 100 chain 296170 chr10 135534747 + 52240990 52245373 L1PA10 4194 + 178 4150 13634 11 2 0 12 4 1 5 2 0 9 11 7 9 2 0 6 6 5 7 1 0 21 2 0 15 1 0 4 47 23 23 2 0 17 1 0 10 19 17 15 7 0 8 1 0 10 0 1 30 7 21 4 1 0 13 10 8 321 0 1 70 0 4 114 0 1 349 0 1 18 2 0 11 23 0 175 13 0 242 8 9 24 0 1 60 2 0 29 333 0 232 1 0 416 0 1 39 5 4 17 0 1 20 2 0 58 0 1 108 7 5 128 13 14 260 0 1 357 0 1 41 7 6 486 3 0 34 chain 2903 chr10 135534747 + 52252683 52252807 LTR9 672 + 539 659 226989 16 27 22 14 42 43 25 chain 25175 chr10 135534747 + 52263101 52263452 LTR7 482 + 0 473 103876 45 21 110 65 1 2 41 1 32 10 0 1 167 chain 15742 chr10 135534747 + 52297226 52297428 L1PA5 6144 - 8 199 139137 138 15 4 49 chain 48663 chr10 135534747 + 52306079 52306639 L1PA4 6152 + 5588 6152 59984 450 0 1 97 0 3 13 chain 130497 chr10 135534747 + 52307045 52308801 L1PA11 4918 + 2259 4508 27964 30 2 0 32 0 5 61 1 0 246 1 2 392 1 12 78 45 517 406 1 2 88 0 1 39 0 1 142 0 4 17 0 2 56 3 2 11 13 15 54 2 0 12 8 7 15 chain 5574 chr10 135534747 + 52311692 52311863 MER58A 224 - 3 198 189339 24 90 114 57 chain 37781 chr10 135534747 + 52328628 52329070 L1PA7 6471 + 6030 6470 72439 210 4 0 216 0 2 12 chain 6298 chr10 135534747 + 52345719 52345798 MER58A 224 - 9 89 182817 11 0 1 68 chain 11468 chr10 135534747 + 52352655 52353100 MLT1F 544 + 0 451 154440 27 245 239 26 1 17 52 22 18 72 chain 5345 chr10 135534747 + 52393141 52393207 MER53 195 + 108 174 191593 66 chain 5507 chr10 135534747 + 52412478 52412658 MLT1A 405 + 224 405 189967 38 2 0 5 94 97 41 chain 14320 chr10 135534747 + 52452837 52453064 L1PA8 5853 - 9 216 143495 84 1 0 19 2 1 40 24 7 11 1 0 45 chain 22812 chr10 135534747 + 52464450 52464813 THE1B 368 + 0 368 116522 19 1 2 154 72 76 117 chain 22921 chr10 135534747 + 52488266 52488529 AluY 311 + 37 301 116007 95 0 1 168 chain 7940 chr10 135534747 + 52500926 52501019 LTR1B 797 - 704 797 171379 93 chain 12055 chr10 135534747 + 52509544 52509712 Tigger3a 397 + 139 311 151969 137 10 14 21 chain 14538 chr10 135534747 + 52519922 52520081 L1PA5 6144 - 3154 3313 142196 159 chain 271099 chr10 135534747 + 52520081 52523203 L1PA5 6144 + 2991 6129 15135 294 1 0 733 1 6 204 1 2 114 0 4 894 0 1 54 0 4 11 0 1 713 0 1 102 chain 26496 chr10 135534747 + 52524327 52524695 THE1B 368 - 0 368 98060 176 4 2 22 1 0 118 5 10 26 2 0 14 chain 3543 chr10 135534747 + 52525776 52525816 MSTA 426 + 386 426 214665 40 chain 26472 chr10 135534747 + 52527241 52527541 AluYk4 311 + 0 299 98161 126 1 0 173 chain 534305 chr10 135534747 + 52542234 52548341 L1PA4 6152 - 14 6146 3677 99 0 1 36 0 1 17 1 2 164 0 1 497 0 1 17 0 1 641 0 1 304 0 4 1019 0 4 147 1 0 230 1 3 1102 0 5 912 0 4 919 chain 69896 chr10 135534747 + 52554729 52555588 THE1A-int 1579 + 714 1574 48439 73 0 7 7 7 0 684 0 1 88 chain 28158 chr10 135534747 + 52555593 52555947 THE1A 353 + 0 353 92431 109 2 1 243 chain 3467 chr10 135534747 + 52558633 52558677 MER58C 217 - 9 53 215862 44 chain 21746 chr10 135534747 + 52581301 52581587 AluSp 311 - 18 302 121221 143 14 12 129 chain 143550 chr10 135534747 + 52586185 52587848 L1P1 4361 + 1774 3433 25553 369 2 1 802 5 1 217 7 7 204 0 1 57 chain 4673 chr10 135534747 + 52592012 52592070 MER63B 433 + 335 393 198840 58 chain 31092 chr10 135534747 + 52596316 52596655 L1PA5 6144 - 15 354 82359 339 chain 262341 chr10 135534747 + 52670033 52672965 L1PA4 6152 - 0 2936 15567 149 1 2 2596 0 3 186 chain 116111 chr10 135534747 + 52682527 52684153 THE1B-int 1605 - 9 1582 32412 111 1 0 397 1 0 4 0 1 319 11 20 27 2 0 5 1 4 117 7 8 129 49 32 107 0 1 35 0 6 56 0 1 106 54 0 87 chain 14971 chr10 135534747 + 52684176 52684538 THE1B 368 - 0 368 141408 25 35 36 65 4 0 8 95 103 17 6 7 107 chain 53158 chr10 135534747 + 52694866 52695618 L1PA15 4387 - 202 937 56919 55 1 0 26 1 0 94 7 1 25 0 1 31 1 0 4 0 1 14 1 0 20 0 2 5 2 0 12 6 4 52 10 5 21 2 0 362 chain 11428 chr10 135534747 + 52723650 52723973 LTR12D 1347 + 584 752 154574 94 173 0 15 0 18 41 chain 14016 chr10 135534747 + 52740265 52740445 MLT2A1 477 + 213 394 144528 111 1 0 59 0 2 9 chain 105260 chr10 135534747 + 52798797 52800768 L1MA3 4352 - 566 2134 35436 219 0 1 179 1 0 144 32 20 92 1 3 73 0 6 65 36 50 74 1 0 273 390 10 65 19 14 39 5 6 83 0 4 32 53 20 48 0 1 47 chain 17519 chr10 135534747 + 52823054 52823302 Tigger3c 601 - 55 304 134216 55 2 0 99 5 9 70 0 1 8 2 0 7 chain 3995 chr10 135534747 + 52840877 52840940 MLT1D 503 - 145 209 207457 25 8 9 30 chain 118597 chr10 135534747 + 52886307 52887884 L1PA8 5853 + 4274 5853 31582 91 0 1 128 0 4 95 0 1 389 35 37 73 0 1 470 1 0 46 2 0 70 2 1 6 1 0 53 2 1 19 2 1 92 chain 20623 chr10 135534747 + 52890405 52890697 AluSg7 307 + 25 300 125214 105 7 6 99 7 0 44 9 0 21 chain 18193 chr10 135534747 + 52895682 52895887 L1PA3long 6157 + 5954 6157 132350 47 3 1 155 chain 17871 chr10 135534747 + 52906549 52906779 L1MA5 2750 + 2431 2659 133192 200 1 0 15 1 0 13 chain 5159 chr10 135534747 + 52909554 52909611 MER63A 208 + 91 148 193462 57 chain 199252 chr10 135534747 + 52923166 52925507 L1P1 4361 + 2 2331 19264 154 12 6 412 1 0 118 7 0 1375 0 3 237 1 0 24 chain 30254 chr10 135534747 + 52940984 52941300 AluYb8 318 - 2 318 84054 316 chain 17198 chr10 135534747 + 52953998 52954212 L1PA7 6471 - 1 213 135041 11 2 0 201 chain 307236 chr10 135534747 + 52969814 52973237 L1PA4 6152 + 2726 6152 13122 577 0 1 168 0 1 216 1 0 938 1 2 901 0 2 341 1 0 279 chain 81436 chr10 135534747 + 53027713 53028746 MER11B 1079 - 15 1072 42997 171 0 1 53 0 27 41 8 2 81 0 4 89 1 0 170 0 3 12 2 0 151 3 0 120 0 1 59 20 20 52 chain 31794 chr10 135534747 + 53028753 53029259 L1PB2 3958 + 3338 3836 81180 22 2 1 9 1 0 69 2 0 12 4 0 68 45 40 58 1 0 56 0 1 7 4 12 60 2 0 19 1 0 64 chain 50274 chr10 135534747 + 53031443 53032027 L1PA7 6471 - 264 849 58805 70 0 1 514 chain 18337 chr10 135534747 + 53032027 53032260 L1PA7 6471 + 6212 6454 131967 30 0 8 47 12 13 144 chain 477137 chr10 135534747 + 53035726 53041141 L1PA5 6144 - 0 5522 7827 849 0 1 4 0 3 814 0 5 122 1 5 875 0 1 295 1 0 488 0 78 294 0 4 468 0 4 420 0 5 373 0 2 161 0 1 250 chain 25416 chr10 135534747 + 53041145 53041446 L1PA5 6144 + 300 612 102611 110 0 11 191 chain 26539 chr10 135534747 + 53044656 53044949 L1PA2 6032 - 2 295 97886 146 1 0 34 0 1 112 chain 5387 chr10 135534747 + 53046425 53046562 L1MA5A 2387 - 11 128 191122 11 8 6 19 2 1 22 27 11 10 1 0 37 chain 34635 chr10 135534747 + 53064245 53064622 L1PA3long 6157 - 0 377 76711 377 chain 22517 chr10 135534747 + 53084225 53084509 AluY 311 + 0 291 117955 23 0 20 90 14 1 157 chain 136601 chr10 135534747 + 53110529 53112195 L1PA7 6471 - 3 1687 26714 262 0 6 61 3 4 340 0 2 62 5 7 21 1 0 94 0 1 26 0 11 89 0 1 204 1 0 31 0 1 4 1 0 283 7 3 171 chain 23231 chr10 135534747 + 53122387 53122671 L1PA7 6471 - 3 282 114538 6 5 0 273 chain 25055 chr10 135534747 + 53133876 53134204 L1PA7 6471 - 18 353 104526 55 7 18 60 7 0 112 0 3 87 chain 5083 chr10 135534747 + 53140053 53140115 MER63B 433 + 330 392 194260 62 chain 34493 chr10 135534747 + 53140362 53140795 LTR71A 459 + 2 443 76918 361 0 1 32 9 16 31 chain 111886 chr10 135534747 + 53151895 53153231 SVA_D 2077 - 3 1636 33697 631 1 0 42 7 0 11 9 17 39 0 205 38 1 100 40 0 36 7 1 0 18 40 0 169 2 0 280 chain 33796 chr10 135534747 + 53166549 53166990 MLT2A1 477 - 0 477 77943 57 3 35 212 0 4 169 chain 199860 chr10 135534747 + 53166990 53169856 HERVL-int 5654 - 0 2592 19222 74 0 3 132 0 3 8 1 0 4 0 1 62 0 3 134 10 7 276 4 14 30 4 7 29 5 1 23 0 5 7 7 2 464 0 4 624 7 8 24 7 10 224 2 0 5 12 14 61 1 9 93 306 0 217 0 1 9 chain 28396 chr10 135534747 + 53169884 53170410 MLT2A1 477 - 1 455 91600 48 1 0 8 122 42 13 0 1 137 20 23 30 1 5 51 0 1 95 chain 106437 chr10 135534747 + 53213512 53216973 L1PB2 3958 + 2225 3838 35142 116 8 9 127 2 3 50 6 7 4 1 0 75 2 3 97 1 0 63 3 4 84 2 0 5 0 1 51 1 0 49 1845 0 165 10 6 84 0 1 39 8 10 6 0 2 23 2 0 52 0 3 7 3 0 3 3 0 63 4 2 12 2 0 27 0 1 59 0 1 6 3 0 72 1 0 64 2 1 20 5 15 32 2 0 24 9 8 57 chain 67607 chr10 135534747 + 53214793 53215733 THE1B-int 1605 - 681 1605 49399 151 0 1 267 6 6 20 12 47 313 54 0 102 0 2 15 chain 159323 chr10 135534747 + 53264012 53265785 L1PA4 6152 - 1282 3056 23426 988 0 1 502 0 1 207 1 0 75 chain 111752 chr10 135534747 + 53265785 53267060 L1PA4 6152 + 4860 6140 33686 438 0 4 290 0 1 547 chain 83358 chr10 135534747 + 53271953 53272855 L1PA2 6032 - 0 902 42174 902 chain 106963 chr10 135534747 + 53272857 53274040 L1P1 4361 + 2232 3415 34983 1183 chain 14896 chr10 135534747 + 53296182 53296385 L1P4 1494 - 84 284 141641 20 2 0 40 1 0 140 chain 27056 chr10 135534747 + 53296412 53296710 L1PA3long 6157 - 0 298 96093 298 chain 59909 chr10 135534747 + 53303827 53304514 L1PA5 6144 - 12 697 52870 142 2 0 543 chain 19065 chr10 135534747 + 53304522 53304746 L1PA5 6144 + 5213 5435 129922 81 1 0 79 1 0 62 chain 75223 chr10 135534747 + 53340652 53341525 MER11D 897 - 0 897 45913 120 2 0 57 0 3 107 1 24 586 chain 8447 chr10 135534747 + 53341543 53341634 MER11D 897 - 806 897 168585 91 chain 25953 chr10 135534747 + 53370354 53370809 L1PA8 5853 + 5410 5845 100192 84 56 43 27 1 0 44 2 0 70 17 15 47 2 1 15 9 8 81 chain 13230 chr10 135534747 + 53377295 53377513 Tigger3c 601 + 341 573 147358 41 0 5 89 8 10 15 23 30 42 chain 29540 chr10 135534747 + 53388437 53388751 AluYb8 318 + 0 314 86480 314 chain 194864 chr10 135534747 + 53388989 53391589 Charlie3 2679 - 0 2610 19594 123 1 4 18 0 1 454 0 1 240 1 0 147 0 2 83 0 3 25 24 27 157 0 14 208 0 1 164 0 2 168 4 1 200 0 1 71 1 0 19 0 1 17 21 4 243 9 7 114 0 1 48 18 19 22 chain 4861 chr10 135534747 + 53416707 53416767 MIR 256 + 74 134 196663 60 chain 73317 chr10 135534747 + 53421124 53421984 L1PA6 6164 + 5285 6152 46875 29 0 5 507 0 2 324 chain 16839 chr10 135534747 + 53433930 53434144 L1PA7 6471 - 1 206 136018 4 1 0 86 8 0 115 chain 17115 chr10 135534747 + 53439484 53439669 L1HS 6032 - 2 187 135266 185 chain 6905 chr10 135534747 + 53439985 53440059 L1PA2 6032 + 5957 6031 178147 74 chain 4346 chr10 135534747 + 53461665 53461721 MER5A 189 - 95 162 202640 7 0 11 49 chain 34056 chr10 135534747 + 53482937 53483386 L1PA7 6471 + 6014 6468 77532 122 0 1 122 25 25 127 0 4 53 chain 12850 chr10 135534747 + 53502642 53502806 L1PA8 5853 + 5691 5853 148843 49 2 1 19 2 1 92 chain 44276 chr10 135534747 + 53518452 53519023 L1PA8 5853 - 0 564 63850 92 2 1 17 1 0 55 1 0 6 7 6 68 2 0 44 1 0 275 chain 5679 chr10 135534747 + 53542228 53542300 MIR 256 - 124 199 188308 8 0 3 64 chain 38152 chr10 135534747 + 53576959 53577425 L1PA7 6471 - 4 465 71908 8 2 0 101 1 0 34 0 1 10 2 0 182 1 0 125 chain 5292 chr10 135534747 + 53581613 53581690 L1MA9 1812 + 1540 1614 192092 26 3 1 13 1 0 34 chain 29139 chr10 135534747 + 53643924 53644234 AluYg6 310 + 0 310 88369 310 chain 104157 chr10 135534747 + 53648823 53650001 L1PA5 6144 - 0 1182 35704 11 1 3 423 0 2 743 chain 6758 chr10 135534747 + 53673135 53673226 L1PA16 3655 - 66 154 179266 11 3 0 77 chain 41681 chr10 135534747 + 53675840 53676401 MER41A 554 + 0 553 67049 204 18 13 148 4 0 65 0 1 122 chain 557117 chr10 135534747 + 53701214 53707374 L1PA3long 6157 - 0 6157 599 132 1 0 335 0 2 4162 4 0 1526 chain 65853 chr10 135534747 + 53726567 53727328 L1PA5 6144 + 5381 6142 50165 404 1 0 204 0 1 152 chain 19025 chr10 135534747 + 53741390 53741873 L1PA13 3608 - 3043 3495 130051 48 2 0 16 33 30 11 4 0 15 2 0 17 45 43 94 7 5 32 61 52 25 3 0 12 2 1 26 5 2 23 chain 44380 chr10 135534747 + 53751142 53751667 L1PA5 6144 - 1 527 63715 10 3 2 134 1 0 7 0 1 282 0 2 88 chain 21117 chr10 135534747 + 53771487 53771841 THE1B 368 + 0 368 123501 15 2 0 16 28 33 52 0 4 52 2 1 19 2 0 55 14 25 34 1 0 62 chain 100365 chr10 135534747 + 53782681 53783871 L1PA7 6471 - 4 1198 36665 258 0 1 590 5 8 337 chain 131021 chr10 135534747 + 53784094 53785592 L1PA6 6164 - 2 1518 27857 840 0 4 600 0 14 58 chain 39484 chr10 135534747 + 53793516 53793967 LTR7 482 - 0 482 70039 187 1 32 263 chain 300299 chr10 135534747 + 53795216 53798870 HERVH-int 3825 - 0 3825 13406 376 1 4 6 3 0 101 8 218 1120 0 4 186 0 2 91 5 32 394 1 0 4 0 1 63 15 0 444 1 0 49 10 29 46 21 0 17 43 0 7 3 0 12 1 0 15 7 1 13 5 1 9 1 0 10 1 0 38 5 0 240 1 0 70 0 11 211 chain 38812 chr10 135534747 + 53798872 53799321 LTR7 482 - 0 482 71001 161 0 2 24 1 32 263 chain 6824 chr10 135534747 + 53812589 53812692 AluJb 308 + 182 287 178759 66 12 14 25 chain 8216 chr10 135534747 + 53813949 53814039 L1PA3long 6157 + 6067 6157 169857 90 chain 5358 chr10 135534747 + 53823500 53823644 MER52A 1651 - 674 755 191458 44 54 0 17 9 0 20 chain 28937 chr10 135534747 + 53827682 53827987 AluYg6 310 + 0 305 89284 305 chain 13185 chr10 135534747 + 53865590 53865878 L1PB1 5432 - 2 263 147527 4 1 0 4 1 0 9 1 0 12 1 0 9 1 0 22 1 0 23 3 1 14 9 6 16 27 14 15 1 0 41 9 8 10 3 2 51 chain 22874 chr10 135534747 + 53869823 53870114 AluY 311 + 0 297 116215 27 3 0 105 0 1 69 0 16 72 8 0 7 chain 10446 chr10 135534747 + 53879813 53880049 MSTD 398 - 184 394 158509 16 93 67 127 chain 5189 chr10 135534747 + 53899611 53899702 MER58B 340 - 1 93 193156 52 18 19 21 chain 18226 chr10 135534747 + 53914775 53915069 L1PB2 3958 - 120 396 132268 63 1 0 22 2 0 68 26 10 58 1 0 13 9 11 31 chain 30032 chr10 135534747 + 53931546 53931861 AluYb8 318 - 3 318 84716 315 chain 4395 chr10 135534747 + 53941121 53941177 MSTB 430 - 32 88 201994 56 chain 133819 chr10 135534747 + 53941192 53942631 L1HS 6032 - 0 1439 27257 1439 chain 55759 chr10 135534747 + 53964193 53965229 MER11B 1079 + 1 1051 55266 295 30 3 59 0 5 42 0 6 46 18 17 20 26 14 15 0 1 52 5 11 8 5 0 10 159 196 16 8 9 53 0 1 96 1 0 11 0 2 44 1 2 16 chain 94798 chr10 135534747 + 53984240 53985674 L1PB1 5432 - 20 1381 38142 8 1 0 13 1 0 21 1 0 24 2 0 13 45 33 4 1 0 16 1 0 43 1 0 16 2 1 51 2 0 10 27 21 24 51 11 51 1 0 5 0 1 193 0 2 47 1 0 168 10 6 132 15 13 113 0 1 320 chain 558548 chr10 135534747 + 53993088 53999094 L1PA2 6032 + 28 6032 450 890 1 0 2872 1 0 2242 chain 44462 chr10 135534747 + 54007549 54008062 MER9a1 513 - 0 513 63624 284 0 1 4 1 0 224 chain 60568 chr10 135534747 + 54029975 54030640 L1PA4 6152 + 5486 6151 52533 665 chain 140600 chr10 135534747 + 54034054 54036077 L1PB1 5432 - 138 2089 26056 14 1 0 43 1 0 15 3 2 52 2 0 7 150 58 132 0 27 131 2 1 157 1 2 13 14 12 400 0 1 270 0 1 53 0 2 6 0 1 58 8 11 88 0 1 4 2 0 8 7 0 381 chain 51827 chr10 135534747 + 54037773 54038404 L1PA7 6471 + 5510 6146 57735 112 3 1 170 0 1 96 10 13 70 0 1 18 0 1 76 0 1 76 chain 127639 chr10 135534747 + 54051017 54052438 L1PA3long 6157 - 0 1415 28662 283 0 2 53 0 1 406 8 0 112 1 0 558 chain 75089 chr10 135534747 + 54052438 54053260 L1PA3long 6157 + 3912 4735 45793 789 0 1 33 chain 4057 chr10 135534747 + 54107598 54107708 MER52D 1964 + 1151 1207 206531 29 54 0 27 chain 550873 chr10 135534747 + 54119958 54126093 L1PA3long 6157 - 0 6153 1334 1104 0 1 1782 0 4 558 0 1 1042 1 6 476 0 4 517 0 3 655 chain 325684 chr10 135534747 + 54131318 54135442 L1P3 4156 - 20 4153 12358 20 1 0 9 2 0 62 5 6 122 0 1 83 3 0 165 0 1 147 1 0 37 0 1 242 4 0 6 9 13 124 0 4 388 8 14 62 8 0 423 0 5 808 0 3 20 8 7 370 0 1 5 0 1 69 1 0 51 0 1 144 16 17 382 1 0 62 24 23 38 1 2 9 19 20 165 chain 16109 chr10 135534747 + 54159171 54159528 THE1B 368 + 0 359 138028 109 25 26 16 65 63 14 16 24 54 7 6 18 4 0 29 chain 11368 chr10 135534747 + 54160455 54160639 MER65C 458 - 270 454 154826 97 1 0 24 30 31 32 chain 104600 chr10 135534747 + 54163860 54165037 L1PA3long 6157 - 0 1187 35597 855 1 2 76 0 4 60 0 5 185 chain 193819 chr10 135534747 + 54255618 54258538 L1PB1 5432 - 28 4418 19701 13 1 0 21 1 0 24 2 0 14 12 9 14 19 8 5 1 0 16 1 0 39 26 24 48 1 0 11 16 11 13 2 1 19 63 15 322 8 15 87 1 0 43 4 0 10 7 8 184 5 1 436 0 1 4 1 0 222 74 43 459 0 1 14 15 16 69 33 1625 118 33 19 7 1 0 381 chain 64798 chr10 135534747 + 54264809 54265869 MER11A 1151 - 0 1143 50658 66 1 0 46 50 49 97 1 33 16 0 2 6 103 134 11 6 9 80 1 0 57 3 15 197 1 3 30 14 11 96 1 0 106 0 8 71 chain 91630 chr10 135534747 + 54272322 54273732 L1PB1 5432 - 12 1340 39080 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 9 8 11 16 6 6 3 0 60 1 0 15 2 1 53 37 29 24 3 0 6 64 8 99 1 0 194 1 2 184 10 7 58 0 2 347 0 2 93 0 6 14 chain 32140 chr10 135534747 + 54280184 54280592 MER41A 554 + 33 444 80627 22 0 1 76 0 2 310 chain 11245 chr10 135534747 + 54290847 54291007 L1PB 1623 + 1312 1470 155238 134 1 0 7 2 1 16 chain 41133 chr10 135534747 + 54297831 54298368 L1PA10 4194 - 33 578 67738 10 1 0 36 13 10 28 0 13 188 0 1 20 0 4 92 6 0 143 chain 117458 chr10 135534747 + 54340698 54342249 THE1B-int 1605 - 9 1592 31976 383 4 11 165 3 6 106 12 13 421 12 12 12 10 35 157 4 0 262 chain 102057 chr10 135534747 + 54364802 54365939 L1PA5 6144 - 1104 2234 36248 297 6 0 545 1 0 288 chain 94845 chr10 135534747 + 54365939 54367029 L1PA5 6144 + 5047 6139 38034 250 0 4 590 3 1 247 chain 20483 chr10 135534747 + 54367617 54367868 L1PA7 6471 + 6213 6464 125670 251 chain 4863 chr10 135534747 + 54367977 54368148 L1MB7 1623 + 1251 1426 196648 14 35 44 14 1 0 5 44 41 6 1 0 51 chain 25548 chr10 135534747 + 54394667 54394983 L1PA6 6164 - 6 323 102000 141 4 5 171 chain 5405 chr10 135534747 + 54402453 54402527 HSMAR2 1300 + 1200 1275 190939 44 1 2 29 chain 24855 chr10 135534747 + 54421113 54421406 AluY 311 + 15 309 105594 117 0 1 176 chain 31432 chr10 135534747 + 54445167 54445541 L1PA7 6471 - 1036 1412 81488 302 0 2 72 chain 81460 chr10 135534747 + 54445541 54446516 L1PA7 6471 + 5474 6456 42984 119 1 0 30 0 4 17 1 2 606 0 3 201 chain 116284 chr10 135534747 + 54485091 54486965 L1PB1 5432 + 3671 5422 32347 42 7 15 50 0 4 439 5 7 396 17 15 14 0 1 60 8 7 38 0 1 34 6 12 6 6 0 91 1 2 156 10 10 27 2 7 9 111 0 24 8 6 12 2 0 3 2 0 9 7 5 47 2 1 16 2 1 43 1 0 15 1 0 5 22 11 14 25 20 24 1 0 22 4 3 9 1 0 18 chain 554548 chr10 135534747 + 54490121 54496281 L1PA3long 6157 - 8 6151 880 848 0 1 733 0 8 478 36 0 391 0 2 1139 0 1 340 0 2 1035 1 4 425 0 1 118 0 1 616 chain 30716 chr10 135534747 + 54505040 54505464 MER57A1 433 + 0 428 83011 272 5 6 11 5 6 25 11 13 95 chain 5381 chr10 135534747 + 54530798 54530934 LTR32 486 + 333 475 191182 22 60 66 54 chain 75833 chr10 135534747 + 54550527 54551376 L1P1 4361 - 1188 2038 45581 283 0 1 566 chain 122007 chr10 135534747 + 54555013 54556863 L1PB1 5432 - 10 1760 30385 12 0 1 5 1 0 13 1 0 20 2 1 21 50 36 10 3 1 6 1 0 16 1 0 39 23 21 50 20 14 12 1 0 7 1 0 22 7 0 8 7 4 150 1 0 48 14 16 263 3 0 186 0 1 382 28 3 62 2 0 20 1 0 126 36 7 100 0 1 10 3 0 56 chain 113589 chr10 135534747 + 54598514 54599940 L1PA8A 6298 - 7 1479 33203 626 0 2 91 0 1 78 2 5 280 1 0 264 5 6 20 0 43 49 3 0 7 chain 469062 chr10 135534747 + 54600678 54606162 L1PA6 6164 - 8 5511 8070 248 0 2 229 1 0 96 0 1 937 1 0 1559 0 1 755 2 0 497 9 10 375 1 0 635 0 18 39 0 1 100 chain 184984 chr10 135534747 + 54606537 54609035 L1PA10 4194 - 104 2617 20499 64 6 7 40 0 1 188 0 1 4 0 1 5 5 3 10 0 1 50 9 10 4 1 0 39 11 13 35 1 2 51 12 13 51 0 1 298 0 1 233 2 1 288 4 8 26 24 25 26 0 3 562 6 10 256 9 4 178 chain 23187 chr10 135534747 + 54609091 54609363 AluYk4 311 - 28 300 114743 272 chain 6001 chr10 135534747 + 54612366 54612457 HY4 93 + 0 90 185229 65 7 6 19 chain 74920 chr10 135534747 + 54621516 54622429 L1PA8 5853 - 0 909 46051 93 1 0 11 6 5 56 1 0 6 1 0 74 2 0 35 0 1 8 1 0 553 0 2 65 chain 48628 chr10 135534747 + 54705244 54705827 LTR10C 591 + 0 591 60010 266 0 1 5 1 0 37 0 1 198 0 2 13 6 11 57 chain 55948 chr10 135534747 + 54784933 54785648 LTR30 714 - 0 714 55154 168 13 12 36 29 28 214 0 1 255 chain 37394 chr10 135534747 + 54787727 54789070 HERV30-int 1034 - 124 897 72962 5 2 0 17 140 24 20 33 20 20 52 0 18 47 0 27 50 0 24 39 0 49 193 61 33 2 0 6 8 5 19 34 0 36 43 28 47 0 16 81 13 1 41 5 0 51 33 0 58 1 0 42 7 1 13 24 0 10 chain 56551 chr10 135534747 + 54789714 54790421 LTR30 714 - 11 714 54824 157 13 12 49 2 1 16 2 0 468 chain 23425 chr10 135534747 + 54826618 54827063 L1PB1 5432 + 5020 5427 113502 83 3 0 11 1 0 24 2 1 7 1 0 12 18 12 50 2 1 15 1 0 44 1 0 16 27 16 15 2 0 5 1 0 14 2 0 23 4 1 21 1 0 9 0 1 4 2 0 17 2 0 5 chain 59554 chr10 135534747 + 54846132 54846871 L1PA8A 6298 - 7 747 52934 111 2 3 626 chain 78615 chr10 135534747 + 54846871 54847842 L1PA8A 6298 + 4557 5544 44219 79 0 5 59 1 0 322 0 7 12 0 1 447 14 18 37 chain 29056 chr10 135534747 + 54860820 54861130 AluYa5 310 - 2 310 88735 215 2 0 93 chain 325911 chr10 135534747 + 54871049 54875067 L1P2 5180 + 2 4022 12350 141 0 11 93 1 0 250 2 3 8 1 0 7 1 0 122 8 4 146 1 0 6 1 0 140 0 25 539 11 18 692 0 2 491 0 3 247 38 0 1072 chain 2859 chr10 135534747 + 54883550 54883650 MER21B 843 - 405 505 227682 19 50 51 22 1 0 8 chain 50024 chr10 135534747 + 54898770 54899461 LTR30 714 - 0 714 58999 23 1 0 28 13 17 7 5 0 12 0 1 71 0 8 85 8 19 172 5 7 6 0 5 141 1 0 100 1 0 12 chain 184005 chr10 135534747 + 54905148 54907482 L1PA8 5853 - 6 2342 20589 47 0 1 39 1 0 14 0 1 4 2 1 51 1 0 10 9 8 59 7 5 32 12 11 18 1 0 4 1 0 454 0 1 77 2 0 323 1 0 279 1 5 69 2 0 119 0 1 23 2 9 48 2 1 140 0 2 480 chain 3002 chr10 135534747 + 54918162 54918197 MLT1E1A 663 - 335 370 225012 35 chain 6276 chr10 135534747 + 54940509 54940791 L1MB1 2102 - 97 376 182964 63 2 0 19 176 176 11 1 0 10 chain 113044 chr10 135534747 + 54958090 54959343 L1PA3long 6157 - 11 1268 33363 832 0 4 421 chain 50148 chr10 135534747 + 54959343 54959887 L1P1 4361 + 1689 2233 58439 544 chain 26315 chr10 135534747 + 54973553 54973855 AluYa5 310 - 15 310 98766 168 11 4 123 chain 82473 chr10 135534747 + 54974651 54975782 L1PBa 3878 - 1161 2299 42555 6 3 0 407 1 11 223 1 0 173 0 3 5 14 8 120 0 4 63 0 1 61 0 1 9 19 17 26 chain 2995 chr10 135534747 + 54982408 54982488 MER52A 1651 - 658 836 225123 27 30 128 23 chain 168645 chr10 135534747 + 55001128 55003035 L1PA5 6144 - 0 1904 22203 9 2 0 618 1 0 1277 chain 29288 chr10 135534747 + 55007677 55007987 AluYa5 310 - 0 310 87630 310 chain 21794 chr10 135534747 + 55018740 55018970 AluYa5 310 - 0 230 121040 230 chain 6655 chr10 135534747 + 55063839 55063949 MER41A 554 - 0 114 180047 17 4 3 53 7 12 29 chain 14792 chr10 135534747 + 55084801 55085045 L1PA8 5853 - 0 239 141958 46 12 11 26 14 13 16 2 1 50 4 3 7 1 0 66 chain 42055 chr10 135534747 + 55095356 55095872 MER9a2 513 - 0 513 66550 67 2 0 244 0 6 177 7 0 19 chain 310977 chr10 135534747 + 55095872 55099673 HERVK9-int 4720 - 0 4714 12958 430 1 0 774 0 1 515 11 10 57 1 4 459 0 1 4 1 0 45 0 924 312 7 11 99 0 3 909 1 0 30 1 0 5 8 7 62 13 9 13 19 7 8 1 0 15 chain 124539 chr10 135534747 + 55100172 55101556 L1PA4 6152 - 1 1384 29527 395 0 3 170 5 1 198 1 0 287 0 1 328 chain 18317 chr10 135534747 + 55101556 55101789 L1P1 4361 + 4111 4341 131350 40 1 0 154 1 0 23 2 1 12 chain 43406 chr10 135534747 + 55102152 55102667 MER9a2 513 - 0 513 64929 67 2 0 446 chain 12402 chr10 135534747 + 55114094 55115859 L1PB4 2604 + 1310 2474 150630 5 3 0 94 0 2 51 1550 950 62 chain 37114 chr10 135534747 + 55118572 55119026 LTR7 482 - 0 482 73357 49 12 14 124 0 31 207 5 0 57 chain 38189 chr10 135534747 + 55120174 55120633 L1PA5 6144 + 5681 6142 71849 129 0 1 274 0 4 42 3 0 11 chain 500029 chr10 135534747 + 55129887 55135984 L1PA6 6164 + 7 6161 6840 239 15 16 35 1 2 28 0 8 232 1 0 9 0 1 210 0 17 542 23 5 262 1 2 407 0 6 438 0 2 98 0 1 387 5 6 46 0 1 183 0 1 73 0 4 49 0 1 1043 6 14 337 0 1 89 1 0 158 0 1 59 0 8 214 0 1 73 0 9 505 1 0 123 0 2 36 28 30 140 chain 29088 chr10 135534747 + 55155253 55155798 LTR4 552 - 0 538 88598 135 22 16 77 19 0 47 2 0 19 0 10 6 25 49 9 0 10 10 1 0 17 32 12 52 20 17 52 chain 11330 chr10 135534747 + 55194920 55195092 MER30 238 + 49 238 154961 49 0 2 8 13 27 73 1 2 28 chain 29306 chr10 135534747 + 55228514 55228824 AluYb8 318 - 8 318 87540 310 chain 16907 chr10 135534747 + 55237530 55238026 L1PB1 5432 - 8 412 135830 6 1 0 14 1 0 11 6 5 18 1 0 20 29 24 14 11 1 11 2 0 4 1 0 8 10 9 42 1 0 16 2 1 42 28 22 12 1 0 10 1 0 5 74 14 16 1 2 77 chain 9376 chr10 135534747 + 55243160 55243291 MER57B2 428 - 287 428 163682 26 11 21 94 chain 41587 chr10 135534747 + 55244913 55245403 MER9a1 513 - 0 513 67177 106 1 0 363 1 25 19 chain 32438 chr10 135534747 + 55245403 55245783 HERVK9-int 4720 - 0 380 80136 380 chain 39398 chr10 135534747 + 55252482 55252932 LTR7 482 - 0 482 70165 187 0 31 205 1 2 57 chain 539094 chr10 135534747 + 55253766 55259783 L1PA3long 6157 - 1 6152 2970 1271 0 4 3977 0 128 479 0 1 143 0 1 147 chain 316964 chr10 135534747 + 55260273 55264024 HERVH-int 3825 - 0 3782 12726 2015 0 2 92 4 31 394 1 0 4 0 1 63 15 0 442 0 3 8 5 7 6 0 1 57 2 1 42 0 37 15 29 0 24 1 0 10 1 0 38 5 0 309 0 11 169 chain 40701 chr10 135534747 + 55264037 55264487 LTR7 482 - 0 482 68300 187 0 31 205 0 1 58 chain 73670 chr10 135534747 + 55277343 55278213 MER11D 897 + 0 894 46697 280 3 1 258 0 4 31 0 23 185 1 0 112 chain 23092 chr10 135534747 + 55278680 55278964 AluY 311 + 11 295 115182 107 1 0 10 1 2 165 chain 27218 chr10 135534747 + 55282216 55282572 THE1B 368 + 2 368 95528 44 0 15 108 1 0 23 9 5 171 chain 58427 chr10 135534747 + 55286780 55287529 MER4E 760 - 7 760 53730 219 2 0 111 4 0 150 0 1 15 0 5 76 22 25 133 0 1 17 chain 16132 chr10 135534747 + 55394847 55395278 MER83 447 - 39 447 137961 8 0 1 64 39 39 39 13 69 20 36 25 19 95 26 98 chain 41410 chr10 135534747 + 55397053 55397516 LTR2 463 - 0 463 67404 463 chain 173268 chr10 135534747 + 55413563 55415476 L1PA3long 6157 - 0 1916 21682 1483 1 0 308 0 4 121 chain 59060 chr10 135534747 + 55419144 55420247 LTR17 781 + 0 774 53359 119 0 9 135 0 2 9 4 0 53 1 0 301 357 0 86 5 27 33 chain 19096 chr10 135534747 + 55419836 55420082 LTR12C 1709 - 0 245 129827 77 12 11 157 chain 67989 chr10 135534747 + 55455209 55455960 L1PA3long 6157 - 367 1119 49252 483 0 1 268 chain 40751 chr10 135534747 + 55455960 55456416 L1P1 4361 + 3737 4192 68235 413 1 0 42 chain 274466 chr10 135534747 + 55463615 55466743 L1PA5 6144 - 4 3173 14953 267 0 17 44 1 2 31 1 0 484 0 4 1304 5 16 515 0 8 168 0 1 308 chain 17772 chr10 135534747 + 55466881 55467110 L1PA7 6471 - 2 230 133502 8 2 0 162 1 2 56 chain 224418 chr10 135534747 + 55488945 55491596 L1PA5 6144 + 3480 6138 17629 23 1 0 55 0 6 84 0 1 494 0 2 78 0 1 407 0 5 109 10 1 224 0 1 64 0 1 4 1 0 941 0 2 5 3 2 148 chain 14504 chr10 135534747 + 55501789 55502066 MER47A 366 - 0 290 142880 18 62 53 17 0 20 62 8 10 110 chain 100768 chr10 135534747 + 55523315 55524456 L1PA4 6152 - 4 1140 36567 393 0 3 446 13 5 289 chain 491053 chr10 135534747 + 55552109 55557599 L1PA3long 6157 - 1 6153 7315 475 0 1 302 1 0 122 0 1 460 0 2 2096 1 0 365 4 8 115 0 2 1298 0 128 159 0 526 92 chain 9979 chr10 135534747 + 55593706 55593846 MER44A 345 - 124 266 160685 117 3 5 20 chain 8004 chr10 135534747 + 55615537 55615642 L1PA8 5853 + 5743 5847 171025 14 4 3 87 chain 6027 chr10 135534747 + 55626951 55627048 L1MA5A 2387 - 188 277 185009 18 2 0 26 3 0 3 3 0 42 chain 27948 chr10 135534747 + 55641884 55642228 LTR14A 344 + 0 344 93176 153 3 0 5 7 9 99 0 1 77 chain 21897 chr10 135534747 + 55651780 55652073 AluSg4 309 - 5 298 120641 24 3 1 9 0 4 53 3 0 5 0 3 79 1 0 3 1 0 112 chain 21974 chr10 135534747 + 55653222 55653697 L1PB1 5432 + 4981 5422 120338 33 0 2 35 1 0 52 16 14 21 8 6 12 2 0 3 2 0 9 3 1 50 1 0 12 6 5 45 6 5 10 1 0 4 19 8 18 2 0 6 1 0 7 0 3 5 11 6 17 1 0 23 1 0 8 1 0 14 2 0 7 chain 4274 chr10 135534747 + 55657638 55657688 L1MB3 1562 - 311 361 203555 50 chain 400974 chr10 135534747 + 55669296 55674530 L1PA6 6164 + 0 6162 10054 303 21 22 134 7 6 215 0 1 106 0 17 49 0 2 168 1 0 305 0 1 5 0 1 111 1 0 216 0 1057 368 0 2 51 0 9 119 13 169 91 2 0 477 0 3 271 1 0 88 0 4 509 0 1 169 0 1 24 3 21 7 3 0 30 1 0 4 0 1 31 338 0 983 0 1 9 chain 102930 chr10 135534747 + 55683843 55685297 LTR12C 1709 + 84 1709 36012 157 0 1 35 0 4 8 10 6 118 0 1 4 1 0 35 9 12 358 1 0 14 1 0 72 14 239 67 44 13 234 24 1 78 1 0 76 19 18 74 chain 8721 chr10 135534747 + 55692512 55692634 LOR1a 498 - 20 137 167082 80 6 1 36 chain 83525 chr10 135534747 + 55692936 55693864 L1PA4 6152 - 1 931 42108 192 0 1 663 0 1 73 chain 466969 chr10 135534747 + 55727658 55733211 L1PA5 6144 + 0 6144 8149 120 0 14 19 3 15 723 0 1 157 0 1 119 9 0 802 2 1 305 0 4 32 5 1 231 9 583 41 1 0 33 2 1 455 0 1 33 0 1 974 0 2 88 1 0 482 1 0 144 1 0 761 chain 130230 chr10 135534747 + 55741149 55742591 L1PA4 6152 + 4710 6152 28037 1442 chain 3084 chr10 135534747 + 55751422 55751458 LTR12C 1709 + 1159 1195 223255 36 chain 7786 chr10 135534747 + 55786372 55786461 L1PA3long 6157 - 2269 2358 172382 89 chain 203805 chr10 135534747 + 55786464 55788708 L1PA3long 6157 + 3909 6157 18937 1379 0 4 865 chain 195657 chr10 135534747 + 55862082 55864963 HERVL-int 5654 - 3080 5654 19529 227 0 3 149 0 7 111 21 19 61 0 5 156 20 19 151 0 4 101 0 1 436 1 0 165 20 0 53 6 7 538 328 0 73 1 25 263 chain 19023 chr10 135534747 + 55879540 55879763 L1PA7 6471 - 7 230 130056 223 chain 40199 chr10 135534747 + 55926435 55926886 LTR7 482 + 0 482 69029 250 0 31 201 chain 301407 chr10 135534747 + 55926888 55930556 HERVH-int 3825 + 0 3825 13350 212 0 11 155 0 4 150 5 0 38 2 1 9 1 0 24 70 0 14 1 0 13 3 0 18 21 0 42 0 20 18 2 1 49 1 0 444 15 0 462 5 32 281 0 4 1118 8 218 487 chain 38588 chr10 135534747 + 55931816 55932261 LTR7 482 + 0 482 71305 225 0 1 28 1 31 183 0 6 8 chain 79451 chr10 135534747 + 55938450 55939339 L1PA3long 6157 + 5265 6157 43850 45 0 4 510 6 5 328 chain 27897 chr10 135534747 + 55958252 55958548 AluYa5 310 - 2 298 93382 296 chain 23002 chr10 135534747 + 55980335 55980588 AluY 311 + 32 286 115605 100 0 1 153 chain 20915 chr10 135534747 + 56003003 56003276 AluY 311 + 16 292 124227 57 0 1 57 6 8 153 chain 494592 chr10 135534747 + 56048164 56054222 L1PA6 6164 + 4 6153 7136 90 0 1 12 0 6 453 2 1 32 0 1 187 0 17 122 23 0 4 1 0 357 5 6 361 0 2 669 1 2 93 1 0 211 14 86 7 0 3 457 6 8 57 5 6 1054 0 1 52 0 4 137 0 3 137 1 0 70 1 0 1219 0 4 217 chain 28622 chr10 135534747 + 56055622 56055929 AluYa5 310 + 0 306 90644 123 1 0 183 chain 227386 chr10 135534747 + 56055951 56058848 HERV9-int 5642 + 128 4824 17463 185 4 6 282 17 10 184 1 0 101 0 86 110 80 0 15 3 4 8 0 1 5 12 7 480 0 3 143 8 9 325 0 3 745 0 1795 189 chain 39361 chr10 135534747 + 56060378 56060980 LTR12_ 688 + 0 688 70234 163 27 10 129 0 1 4 6 5 130 22 92 19 3 0 5 7 43 87 chain 12983 chr10 135534747 + 56068410 56068567 L1PA7 6471 - 16 173 148300 157 chain 6332 chr10 135534747 + 56103155 56103269 THE1D 372 + 249 365 182526 55 9 10 18 6 7 26 chain 12379 chr10 135534747 + 56103414 56103551 L1PA5 6144 + 5992 6129 150712 137 chain 22638 chr10 135534747 + 56113755 56114021 AluSp 311 - 24 288 117384 11 2 0 253 chain 212139 chr10 135534747 + 56116555 56118922 L1PA3long 6157 + 3779 6149 18348 443 3 0 15 0 1 797 1 0 275 0 4 170 0 1 529 0 1 134 chain 23997 chr10 135534747 + 56127266 56127555 L1PA7 6471 + 6158 6448 110346 46 1 3 106 1 0 135 chain 75950 chr10 135534747 + 56154058 56155117 MER11C 1089 - 16 1089 45513 10 0 1 142 1 0 54 0 1 127 0 1 38 1 0 4 1 5 96 87 86 122 1 0 65 0 4 42 6 4 15 0 9 247 chain 69873 chr10 135534747 + 56175936 56176819 L1PA8A 6298 - 7 897 48450 617 0 1 101 0 2 79 0 3 62 0 1 24 chain 106207 chr10 135534747 + 56183562 56184779 L1PA5 6144 + 4921 6144 35209 295 1 2 81 0 4 84 0 1 756 chain 9671 chr10 135534747 + 56209918 56210023 L1PA5 6144 - 13 118 162237 105 chain 55244 chr10 135534747 + 56212792 56213414 L1PA4 6152 + 5518 6141 55556 299 0 1 323 chain 53188 chr10 135534747 + 56253399 56253995 L1PA3long 6157 + 5549 6152 56900 104 1 2 479 0 6 12 chain 35691 chr10 135534747 + 56260584 56261004 L1PA7 6471 + 6046 6470 75282 318 0 3 8 0 1 94 chain 23387 chr10 135534747 + 56265282 56265566 L1PA7 6471 + 6186 6468 113719 275 2 0 7 chain 540753 chr10 135534747 + 56274747 56280982 L1PA4 6152 + 0 6151 2697 5 1 0 455 6 0 72 1 2 46 1 0 246 24 7 297 62 0 49 0 1 64 2 0 2047 0 1 2564 0 2 293 chain 4313 chr10 135534747 + 56275911 56275960 L1PA4 6152 + 1141 1190 203052 49 chain 54867 chr10 135534747 + 56333648 56334247 L1PA2 6032 - 865 1464 55566 599 chain 75374 chr10 135534747 + 56334247 56335071 L1PA2 6032 + 5206 6030 45832 824 chain 24970 chr10 135534747 + 56385135 56385503 THE1B 368 + 0 368 104956 13 2 0 27 0 5 45 25 24 5 0 2 51 2 1 118 3 0 77 chain 4209 chr10 135534747 + 56387639 56387687 MER31B 477 - 429 477 204433 48 chain 17371 chr10 135534747 + 56391778 56392020 L1PA16 3655 + 3321 3568 134594 19 10 17 57 1 0 78 1 0 76 chain 35342 chr10 135534747 + 56403580 56403969 L1PA3long 6157 - 0 388 75748 339 1 0 49 chain 23346 chr10 135534747 + 56432854 56433141 L1PA7 6471 - 22 306 113949 130 1 0 5 1 0 101 1 0 48 chain 16940 chr10 135534747 + 56452695 56452919 L1PA8A 6298 - 8 230 135750 70 0 1 94 5 2 55 chain 12894 chr10 135534747 + 56454793 56454974 L1PA4 6152 + 5966 6140 148652 4 1 0 26 1 8 7 13 0 129 chain 26815 chr10 135534747 + 56476125 56476424 L1PA3long 6157 - 1605 1904 96610 299 chain 145031 chr10 135534747 + 56476424 56478029 L1PA3long 6157 + 4550 6155 25321 1605 chain 8602 chr10 135534747 + 56495065 56495161 L1PA2 6032 - 680 776 167716 96 chain 58351 chr10 135534747 + 56495161 56495788 L1PA2 6032 + 5404 6031 53775 627 chain 28772 chr10 135534747 + 56517036 56517340 AluYg6 310 - 6 310 90010 304 chain 9002 chr10 135534747 + 56532231 56532351 L1PA11 4918 + 4373 4488 165584 22 1 0 12 2 0 67 2 0 14 chain 14518 chr10 135534747 + 56540928 56541098 L1PA7 6471 - 2 172 142828 170 chain 9990 chr10 135534747 + 56574459 56574586 MER85 139 - 2 139 160626 38 0 10 89 chain 77984 chr10 135534747 + 56584635 56585487 L1PA3long 6157 - 0 853 44520 830 0 1 22 chain 55881 chr10 135534747 + 56589885 56590506 L1PA4 6152 + 5532 6152 55192 615 1 0 5 chain 3880 chr10 135534747 + 56609436 56609514 MADE1 96 - 0 96 209168 15 0 2 18 17 33 28 chain 9773 chr10 135534747 + 56610070 56610315 L1PB1 5432 - 11 230 161725 4 1 0 13 1 0 13 1 0 21 1 0 24 2 0 11 15 12 15 31 18 10 1 0 40 6 5 16 1 0 7 1 0 10 chain 44969 chr10 135534747 + 56633734 56634228 L1PA3long 6157 - 0 494 63089 494 chain 3074 chr10 135534747 + 56668545 56668577 MER52D 1964 - 706 738 223483 32 chain 13674 chr10 135534747 + 56682211 56682378 MSTA-int 1630 + 1458 1625 145698 167 chain 68283 chr10 135534747 + 56694242 56694998 L1PA3long 6157 + 5400 6155 49130 498 1 0 257 chain 5481 chr10 135534747 + 56708096 56708166 MLT2B4 540 - 341 411 190216 70 chain 10522 chr10 135534747 + 56709857 56710028 THE1D 372 - 0 170 158158 99 10 11 22 6 5 11 1 0 22 chain 2231 chr10 135534747 + 56730057 56730129 MLT1A1-int 1737 + 1 72 236207 16 36 35 20 chain 9321 chr10 135534747 + 56739844 56739969 MER85 139 - 0 135 163949 39 1 11 85 chain 102437 chr10 135534747 + 56746663 56748073 L1PA7 6471 - 16 1440 36153 98 14 35 436 0 1 74 45 44 22 0 1 114 0 4 87 10 8 455 14 4 41 chain 24533 chr10 135534747 + 56749567 56749925 THE1B 368 + 0 368 107358 40 12 27 15 7 4 86 1 0 26 0 2 90 3 0 78 chain 7284 chr10 135534747 + 56758074 56758159 L1PA3long 6157 + 6073 6157 175563 73 1 0 11 chain 91328 chr10 135534747 + 56759492 56760573 MER11C 1089 - 10 1089 39186 187 0 1 211 5 4 105 5 4 475 1 0 92 chain 155435 chr10 135534747 + 56829050 56830743 L1PA3long 6157 - 11 1706 23930 1351 0 2 342 chain 232465 chr10 135534747 + 56830743 56833310 L1PA3long 6157 + 1877 4445 17173 328 1 3 1054 0 1 4 1 0 1058 1 0 120 chain 25353 chr10 135534747 + 56853136 56853441 L1PA5 6144 - 881 1203 101716 4 1 0 36 0 17 160 0 1 104 chain 75204 chr10 135534747 + 56853441 56854311 L1PA5 6144 + 5273 6143 45918 537 0 1 203 1 0 129 chain 3103 chr10 135534747 + 56891453 56891494 MER52A 1651 - 658 761 222876 10 0 62 31 chain 11899 chr10 135534747 + 56907424 56907554 L1PA3long 6157 - 0 130 152612 130 chain 70989 chr10 135534747 + 56916926 56917713 L1PA5 6144 + 5345 6132 47933 787 chain 7390 chr10 135534747 + 56922202 56922417 LTR8A 794 + 1 241 174830 15 17 0 16 55 60 54 1 14 13 0 1 4 8 31 32 chain 7194 chr10 135534747 + 56958576 56958761 MSTA 426 + 247 405 176109 11 39 0 5 11 0 7 1 3 13 13 34 85 chain 114358 chr10 135534747 + 57014722 57016007 L1PA4 6152 - 9 1298 32978 835 0 4 450 chain 159828 chr10 135534747 + 57016009 57017805 L1P1 4361 + 5 1802 23363 849 1 0 183 0 2 763 chain 24864 chr10 135534747 + 57051829 57052120 THE1B-int 1605 - 22 313 105553 140 0 1 51 1 0 99 chain 29202 chr10 135534747 + 57070392 57070787 L1PA7 6471 + 6071 6468 88037 78 4 1 267 1 10 34 4 0 7 chain 23977 chr10 135534747 + 57094074 57094365 AluSp 311 - 19 310 110464 291 chain 11528 chr10 135534747 + 57122622 57122788 MER30 238 - 0 191 154187 78 1 7 32 2 21 53 chain 17757 chr10 135534747 + 57123702 57124031 THE1C 375 + 16 336 133547 47 22 23 50 4 0 42 65 59 99 chain 17485 chr10 135534747 + 57133630 57133844 L1PA7 6471 + 6239 6454 134300 154 4 5 56 chain 36752 chr10 135534747 + 57137522 57137969 L1PA7 6471 + 6010 6461 73872 13 0 5 296 1 0 137 chain 3151 chr10 135534747 + 57192412 57192496 L1PA15 4387 + 4046 4129 221913 34 34 33 16 chain 3756 chr10 135534747 + 57199322 57199404 MADE1 96 - 2 96 211022 27 25 37 30 chain 101650 chr10 135534747 + 57202791 57204054 L1PA7 6471 + 5201 6470 36357 152 0 1 123 0 1 79 0 8 57 11 8 76 1 0 764 chain 37983 chr10 135534747 + 57278133 57278572 LTR19B 566 + 2 440 72159 43 1 0 395 chain 103330 chr10 135534747 + 57287988 57289161 L1PA4 6152 - 0 1174 35915 113 0 1 1060 chain 25656 chr10 135534747 + 57348887 57349169 L1PA3long 6157 - 1071 1354 100713 230 0 1 52 chain 97249 chr10 135534747 + 57349169 57350232 L1PA3long 6157 + 5092 6157 37497 214 0 1 700 0 1 149 chain 544683 chr10 135534747 + 57361637 57367668 L1PA3long 6157 + 0 6157 2111 130 1 3 20 1 0 4 0 2 609 8 136 550 6 0 2739 0 1 1963 chain 41739 chr10 135534747 + 57412290 57412803 MER9a3 513 + 0 513 66976 87 6 7 328 1 0 91 chain 51480 chr10 135534747 + 57435957 57436576 L1PA7 6471 - 5 626 57983 17 0 1 127 1 0 11 1 2 126 0 1 336 chain 552271 chr10 135534747 + 57442836 57448852 L1PA2 6032 - 4 6031 1161 1471 0 1 1705 0 1 531 1 5 46 0 4 1832 0 1 430 chain 30427 chr10 135534747 + 57455320 57455638 AluYb8 318 - 0 318 83634 318 chain 10914 chr10 135534747 + 57461749 57461877 L1PA7 6471 + 6310 6438 156541 128 chain 18406 chr10 135534747 + 57516794 57517016 L1PA6 6164 + 5937 6160 131757 180 3 4 39 chain 177892 chr10 135534747 + 57533550 57535560 L1PA5 6144 + 4132 6142 21174 490 1 0 244 0 4 911 2 0 110 1 0 251 chain 13006 chr10 135534747 + 57548373 57548518 L1PA7 6471 + 6081 6226 148223 145 chain 80096 chr10 135534747 + 57553907 57554924 L1PA7 6471 + 5451 6467 43541 166 8 11 82 0 1 74 8 9 255 2 1 401 0 1 9 6 0 6 chain 55382 chr10 135534747 + 57567012 57568013 L1PB1 5432 - 12 948 55470 16 1 0 13 1 0 19 7 6 20 89 72 32 27 25 48 2 0 10 17 12 9 1 0 23 7 0 12 8 0 59 0 1 46 1 2 161 48 22 6 0 2 87 4 10 81 3 0 80 2 1 61 chain 29980 chr10 135534747 + 57568013 57568393 L1PB1 5432 + 4103 4487 84357 343 2 6 35 chain 6682 chr10 135534747 + 57575293 57575381 MER57-int 2662 - 2476 2563 179823 78 1 0 9 chain 38535 chr10 135534747 + 57579589 57580263 LTR9B 643 - 7 643 71387 28 16 15 73 15 18 4 0 1 4 1 0 10 112 67 174 3 5 4 0 1 26 0 2 204 chain 20732 chr10 135534747 + 57614435 57614656 AluYa5 310 + 85 305 124847 47 1 0 173 chain 16416 chr10 135534747 + 57654227 57654430 THE1A 353 + 0 202 137163 110 1 0 92 chain 118885 chr10 135534747 + 57656469 57658059 THE1A-int 1579 - 0 1579 31460 327 19 0 99 23 22 194 0 1 4 2 1 20 0 6 45 4 5 74 0 2 408 6 5 321 1 0 28 0 2 15 chain 538587 chr10 135534747 + 57659401 57665443 L1PA3long 6157 + 0 6156 3055 152 0 1 615 8 136 861 0 1 354 1 2 877 0 1 659 20 0 1389 0 1 774 0 1 187 1 0 4 0 1 140 chain 299719 chr10 135534747 + 57679924 57683730 L1PA7 6471 - 1 6471 13442 168 0 1 5 1 0 14 0 1 417 8 6 9 1 0 4 0 1 35 3 10 86 0 2659 321 0 1 36 0 1 48 8 7 874 0 4 9 11 8 449 8 6 404 1 2 130 3 0 344 1 2 408 chain 29672 chr10 135534747 + 57702055 57702365 AluYa5 310 - 0 310 85951 310 chain 28337 chr10 135534747 + 57714644 57714947 AluYb8 318 + 0 304 91811 160 0 1 143 chain 14008 chr10 135534747 + 57726324 57726691 MLT1A-int 1186 + 793 1173 144556 81 38 35 34 1 2 29 69 73 39 39 50 37 chain 195441 chr10 135534747 + 57731660 57734375 HERVH-int 3825 + 0 2991 19545 300 44 44 66 20 19 21 1 27 10 1 36 22 0 1 12 0 1 8 1 215 56 0 3 266 0 1 126 42 15 182 9 0 257 0 27 31 1 0 340 4 9 313 0 1 5 5 4 226 0 3 50 3 1 104 0 35 11 35 0 143 chain 42576 chr10 135534747 + 57815605 57816115 L1PA7 6471 - 5 515 65932 141 0 1 35 1 0 333 chain 20708 chr10 135534747 + 57819179 57819563 THE1D 372 + 0 370 124936 46 29 0 19 0 10 86 74 79 130 chain 43429 chr10 135534747 + 57820119 57820604 L1PA5 6144 - 0 485 64895 485 chain 4107 chr10 135534747 + 57823561 57823607 MADE1 96 + 50 96 205817 46 chain 18456 chr10 135534747 + 57824716 57825064 THE1B 368 + 0 368 131627 33 7 22 101 21 18 11 48 48 73 5 13 49 chain 56227 chr10 135534747 + 57842740 57843454 LTR12 884 - 132 884 55007 375 2 0 102 1 0 82 0 1 75 0 41 51 1 0 25 chain 176642 chr10 135534747 + 57847622 57850050 L1PA8 5853 + 3479 5853 21289 109 1 0 6 0 1 125 5 6 489 9 1 44 9 0 110 15 14 26 25 16 550 0 1 29 6 1 349 0 1 177 0 1 29 1 0 18 0 4 22 2 0 55 75 50 30 1 0 17 0 3 8 4 0 82 chain 32555 chr10 135534747 + 57852707 57853166 L1PA10 4194 - 1226 1691 79937 234 0 1 58 11 15 29 2 1 5 0 2 13 1 0 74 7 8 25 chain 3604 chr10 135534747 + 57857570 57857611 L1P2 5180 + 2148 2189 213579 41 chain 5009 chr10 135534747 + 57870767 57870862 MSTA 426 + 71 189 195029 29 26 49 40 chain 24082 chr10 135534747 + 57872984 57873283 THE1C 375 - 77 375 109859 40 1 0 258 chain 207454 chr10 135534747 + 57888786 57891873 L1PA8 5853 + 3084 5853 18686 114 38 22 118 0 9 42 9 6 503 310 0 611 5 0 7 0 5 346 0 1 31 0 1 13 15 16 81 0 2 72 0 2 182 0 1 295 1 0 44 2 0 71 1 0 5 5 4 11 2 3 38 2 1 18 6 5 89 chain 50706 chr10 135534747 + 57904176 57904781 L1PA5 6144 + 5536 6142 58499 379 0 2 74 4 6 8 3 0 137 chain 24354 chr10 135534747 + 57909758 57910092 THE1B-int 1605 - 11 339 108352 6 7 0 258 25 26 38 chain 10243 chr10 135534747 + 57912610 57912738 THE1D 372 + 243 372 159406 42 0 1 86 chain 125638 chr10 135534747 + 57914700 57916149 LTR12C 1709 + 0 1709 29204 579 1 0 99 0 159 275 1 0 5 3 1 106 0 4 212 0 101 168 chain 31884 chr10 135534747 + 57944109 57944475 L1P1 4361 - 43 407 81037 13 1 0 155 1 0 196 chain 539111 chr10 135534747 + 57946093 57952014 L1PA2 6032 + 95 6021 2967 478 0 4 2509 0 1 732 1 0 2067 0 1 134 chain 70522 chr10 135534747 + 57970609 57971431 L1PA5 6144 + 5321 6144 48147 152 0 2 519 0 1 137 3 1 11 chain 24773 chr10 135534747 + 58034131 58034484 L1PA8 5853 - 0 348 106042 93 1 0 19 2 1 31 16 16 82 3 1 46 1 0 59 chain 18452 chr10 135534747 + 58036006 58036219 L1PA5 6144 + 5926 6139 131634 213 chain 6662 chr10 135534747 + 58075889 58075982 MLT1A1 405 - 16 112 179975 18 5 8 70 chain 87418 chr10 135534747 + 58145510 58146512 L1PA5 6144 - 0 1014 40596 156 0 12 846 chain 55398 chr10 135534747 + 58146512 58147149 L1PA5 6144 + 4496 5133 55373 155 3 4 37 3 1 162 0 1 277 chain 65349 chr10 135534747 + 58150841 58151655 L1PA7 6471 + 5641 6468 50399 218 1 0 240 0 4 192 13 27 139 4 0 7 chain 112219 chr10 135534747 + 58154503 58155734 L1PA3long 6157 - 0 1235 33607 20 1 0 134 0 1 694 0 4 382 chain 87426 chr10 135534747 + 58167222 58168368 L1PA8A 6298 - 46 1132 40591 10 4 0 4 31 0 228 1 0 200 22 0 236 0 1 83 3 1 13 5 4 306 chain 546223 chr10 135534747 + 58201840 58207997 L1PA3long 6157 - 0 6153 1919 151 1 2 3670 1 0 1391 0 2 100 17 0 124 0 7 24 1 4 107 0 1 570 chain 46275 chr10 135534747 + 58245434 58245951 L1PA4 6152 + 5626 6143 61793 517 chain 26286 chr10 135534747 + 58245974 58246453 L1PA15 4387 - 60 520 98876 11 2 0 46 6 3 44 20 15 23 1 0 40 18 17 23 2 1 55 5 1 115 1 0 12 8 9 20 3 1 24 chain 94612 chr10 135534747 + 58253965 58255145 L1PA7 6471 + 5270 6454 38183 344 8 7 124 1 0 74 1 7 628 chain 55448 chr10 135534747 + 58262268 58263004 L1PREC2 3366 - 591 1330 55440 22 25 23 67 6 8 83 0 2 401 0 1 132 chain 12690 chr10 135534747 + 58269702 58269846 THE1B-int 1605 + 1456 1600 149490 144 chain 118711 chr10 135534747 + 58278227 58279795 THE1A-int 1579 - 6 1579 31526 89 0 1 160 1 0 144 5 6 14 0 1 52 1 0 4 9 10 405 22 23 529 6 9 39 17 16 71 chain 25613 chr10 135534747 + 58279795 58280149 THE1A 353 - 0 353 101662 151 1 0 82 17 17 103 chain 179694 chr10 135534747 + 58285829 58287834 L1PA3long 6157 - 0 1970 21019 7 0 1 74 37 0 72 0 1 1815 chain 113456 chr10 135534747 + 58287834 58289080 L1PA3long 6157 + 2937 4184 33117 1009 0 1 237 chain 4517 chr10 135534747 + 58291484 58291533 L1PA5 6144 - 203 252 200592 49 chain 14307 chr10 135534747 + 58291533 58291702 L1PA5 6144 + 5972 6140 143541 30 1 0 138 chain 204464 chr10 135534747 + 58311889 58314186 L1PA5 6144 - 0 2297 18892 2297 chain 19475 chr10 135534747 + 58317942 58318270 L1PA8 5853 + 5527 5853 128730 35 1 0 33 0 1 11 3 1 70 29 27 35 2 1 19 1 0 28 11 15 50 chain 6369 chr10 135534747 + 58328207 58328283 THE1D-int 1627 - 8 84 182254 76 chain 123424 chr10 135534747 + 58334346 58335800 HERV9-int 5642 - 2574 4030 29908 326 0 1 311 0 1 817 chain 23889 chr10 135534747 + 58336538 58336822 L1PA7 6471 - 600 889 110964 108 0 1 159 0 4 17 chain 50460 chr10 135534747 + 58336822 58337444 L1PA7 6471 + 5828 6457 58674 405 0 4 123 0 6 14 6 3 74 chain 3861 chr10 135534747 + 58347621 58347794 MER110 477 + 0 172 209451 28 112 111 33 chain 19002 chr10 135534747 + 58348733 58349064 THE1B 368 - 24 368 130106 14 59 58 96 1 0 108 9 24 44 chain 48632 chr10 135534747 + 58351851 58352796 L1PB1 5432 - 12 919 60005 16 1 0 13 1 0 21 1 0 23 3 1 10 17 14 19 11 1 6 3 0 10 10 9 41 18 16 15 0 12 26 2 0 6 9 4 11 1 0 12 1 0 17 118 103 205 6 5 96 1 3 77 3 0 115 chain 91592 chr10 135534747 + 58371456 58372525 L1PA7 6471 + 5395 6464 39096 168 0 1 57 1 0 843 chain 42224 chr10 135534747 + 58379355 58379870 L1PA7 6471 - 10 528 66369 163 2 1 5 0 2 60 0 1 97 0 1 188 chain 3808 chr10 135534747 + 58383425 58383472 MER45B 1037 - 182 229 210268 47 chain 14873 chr10 135534747 + 58383768 58384079 LTR57 402 - 56 402 141705 97 6 22 30 0 1 21 46 45 31 41 60 39 chain 82621 chr10 135534747 + 58397613 58398717 L1PA10 4194 - 44 1140 42497 29 9 6 39 11 9 455 0 2 144 6 3 89 6 5 230 1 3 6 3 0 76 chain 189558 chr10 135534747 + 58399649 58401914 L1PA7 6471 - 17 2289 20094 754 0 2 77 1 0 72 2 1 94 0 1 368 0 1 105 1 0 452 1 5 72 0 1 207 0 1 59 chain 130219 chr10 135534747 + 58401929 58403626 L1PA7 6471 + 2543 4145 28041 98 15 5 360 2 1 344 96 14 164 1 0 471 1 0 145 chain 6534 chr10 135534747 + 58402772 58402844 L1PA7 6471 + 3371 3443 178210 72 chain 76492 chr10 135534747 + 58416320 58417342 L1PA8 5853 - 8 1021 45214 83 1 0 21 3 2 47 17 17 67 2 0 44 1 0 43 0 1 356 7 10 50 0 1 90 2 7 123 15 1 50 chain 27941 chr10 135534747 + 58432299 58432668 MLT2A1 477 + 1 376 93200 5 0 1 135 8 9 17 1 5 203 chain 60245 chr10 135534747 + 58434472 58435209 L1PA7 6471 - 8 747 52707 42 2 1 140 0 1 326 0 1 99 4 5 124 chain 6896 chr10 135534747 + 58436985 58437092 MER34 540 + 419 528 178215 65 11 13 31 chain 4831 chr10 135534747 + 58438003 58438058 L1PA8 5853 - 714 769 197004 55 chain 6779 chr10 135534747 + 58438058 58438173 L1PA8 5853 - 771 886 179115 73 2 0 8 15 17 17 chain 51310 chr10 135534747 + 58438173 58438821 L1PA8 5853 + 5212 5853 58102 352 1 0 42 7 5 68 1 0 21 1 0 40 2 1 19 1 0 93 chain 532017 chr10 135534747 + 58443588 58449718 L1PA5 6144 + 0 6142 3959 173 1 3 552 0 1 303 0 1 341 0 1 534 0 1 1178 0 5 416 7 6 162 2 0 1201 37 13 20 1 22 1039 0 6 16 0 1 147 chain 122399 chr10 135534747 + 58468500 58469850 L1PA3long 6157 - 2111 3470 30129 808 0 9 542 chain 193869 chr10 135534747 + 58469850 58471973 L1PA3long 6157 + 4032 6157 19694 60 0 1 399 0 1 67 0 1 80 1 0 1516 chain 34127 chr10 135534747 + 58475530 58475907 L1PA2 6032 - 4 382 77441 146 0 1 231 chain 37030 chr10 135534747 + 58488593 58489002 L1PA4 6152 - 206 618 73481 127 0 3 282 chain 18172 chr10 135534747 + 58489003 58489207 L1PA4 6152 + 5947 6151 132400 204 chain 50315 chr10 135534747 + 58504242 58504935 LTR12D 1347 - 0 942 58778 155 0 200 105 9 1 10 26 34 21 1 2 108 0 17 127 0 31 131 chain 21673 chr10 135534747 + 58514369 58514632 LTR12C 1709 - 0 262 121492 84 5 4 174 chain 81785 chr10 135534747 + 58539300 58540251 L1PA5 6144 - 0 948 42852 154 7 0 714 1 5 75 chain 3428 chr10 135534747 + 58554361 58554434 L1M4c 1769 + 1608 1679 216608 26 20 18 27 chain 15094 chr10 135534747 + 58561619 58561783 L1PA2 6032 + 5867 6031 141052 164 chain 28585 chr10 135534747 + 58578811 58579180 THE1C 375 - 0 375 90804 26 1 0 172 0 2 36 0 4 26 1 2 107 chain 75052 chr10 135534747 + 58582461 58583475 MER11A 1151 + 0 1151 45994 58 1 0 12 1 100 119 9 6 93 0 1 51 4 5 88 0 1 3 0 1 17 5 4 123 0 4 4 1 0 53 0 4 56 1 0 15 7 41 226 8 7 59 chain 17866 chr10 135534747 + 58599160 58599439 THE1D 372 - 1 286 133201 80 6 8 58 1 0 22 32 37 80 chain 16709 chr10 135534747 + 58619532 58619729 AluY 311 + 105 303 136380 27 0 1 170 chain 46879 chr10 135534747 + 58629816 58630340 L1P1 4361 - 863 1387 61327 524 chain 35697 chr10 135534747 + 58630340 58630744 L1PA3long 6157 + 5748 6152 75274 404 chain 9100 chr10 135534747 + 58631765 58631888 L1PA7 6471 + 6342 6464 165070 71 2 1 50 chain 42903 chr10 135534747 + 58642885 58643406 L1P3 4156 + 1087 1612 65535 123 0 4 398 chain 34932 chr10 135534747 + 58643406 58643840 L1PA7 6471 + 6025 6460 76292 111 0 1 158 14 14 151 chain 33507 chr10 135534747 + 58647031 58647413 L1PA5 6144 + 5749 6131 78400 382 chain 35703 chr10 135534747 + 58648599 58649070 L1PA8 5853 - 6 470 75267 87 1 0 19 2 1 47 1 0 16 1 0 69 2 0 46 1 0 179 chain 74930 chr10 135534747 + 58670894 58671856 LTR13A 966 - 0 966 46047 265 4 6 311 1 0 8 0 1 203 1 0 44 0 1 50 8 10 67 chain 24536 chr10 135534747 + 58673801 58674258 L1PB1 5432 - 69 753 107334 17 2 0 11 11 8 30 13 1 16 1 0 33 0 5 5 1 0 16 2 1 53 2 0 8 5 1 11 1 0 13 2 1 15 4 1 11 0 250 14 0 2 16 12 13 132 chain 20430 chr10 135534747 + 58674258 58674527 L1PB1 5432 + 4399 4671 125116 230 1 4 38 chain 113539 chr10 135534747 + 58719663 58720967 L1PA5 6144 + 4835 6140 33214 315 0 1 141 1 2 498 2 1 347 chain 330394 chr10 135534747 + 58741567 58745662 L1PA7 6471 - 11 4113 12188 81 18 18 223 0 2 504 0 11 142 0 1 690 0 10 116 0 1 350 0 2 459 8 0 277 0 3 28 11 13 32 0 1 345 0 1 310 2 1 198 28 0 27 0 7 104 1 3 7 0 1 134 chain 23480 chr10 135534747 + 58745671 58745950 L1PA7 6471 + 2063 2342 113218 279 chain 9261 chr10 135534747 + 58760522 58760658 L1PA8 5853 + 5719 5853 164253 20 7 6 15 1 0 93 chain 104948 chr10 135534747 + 58764567 58765714 L1PA3long 6157 + 5010 6157 35512 1147 chain 57420 chr10 135534747 + 58779864 58780627 MER4E1 777 - 8 777 54279 4 1 0 215 5 13 259 1 0 24 1 0 11 0 1 77 3 2 116 0 1 46 chain 10468 chr10 135534747 + 58780627 58780755 MER50 708 + 558 686 158398 128 chain 28353 chr10 135534747 + 58792828 58793182 THE1A 353 + 0 353 91752 110 1 0 243 chain 34419 chr10 135534747 + 58803078 58803464 L1PA4 6152 + 5766 6152 77032 386 chain 5015 chr10 135534747 + 58820130 58820462 L1PA12 2803 + 1338 1653 194974 27 4 0 18 2 0 25 235 224 21 chain 261459 chr10 135534747 + 58837006 58840226 L1PA7 6471 - 5 3227 15619 145 13 14 359 3 0 330 1 0 315 0 1 113 13 9 506 0 8 123 1 2 160 0 1 107 2 0 36 0 1 4 1 0 132 0 1 263 0 1 223 1 0 82 0 1 4 1 0 33 2 1 247 chain 29946 chr10 135534747 + 58863548 58863866 L1HS 6032 - 1 319 84979 318 chain 44183 chr10 135534747 + 58878725 58879236 MER9a1 513 + 0 513 63964 184 0 1 70 0 1 257 chain 32916 chr10 135534747 + 58894610 58895094 MLT2A1 477 + 1 477 79343 167 5 2 34 0 1 146 0 1 32 6 0 7 43 39 23 0 3 21 chain 439419 chr10 135534747 + 58895094 58900718 HERVL-int 5654 + 0 5638 9066 102 9 9 19 5 6 111 0 2 220 0 1 568 8 4 137 0 1 107 0 1 133 8 4 834 5 0 298 6 8 98 0 3 181 0 2 193 1 0 29 21 24 66 0 1 172 5 6 130 3 1 381 0 1 25 1 0 86 0 2 679 6 12 245 11 15 93 1 2 154 0 2 55 14 8 296 11 14 97 chain 28233 chr10 135534747 + 58900734 58901123 MLT2A1 477 + 0 393 92181 161 12 9 178 0 16 19 9 0 10 chain 4074 chr10 135534747 + 58941691 58942224 L1ME1 1623 - 62 575 206275 17 6 0 7 28 16 13 44 36 26 6 0 10 341 353 35 chain 51221 chr10 135534747 + 58955743 58956348 L1PA3long 6157 - 2 606 58175 119 2 0 5 10 19 10 8 0 451 chain 50992 chr10 135534747 + 58956348 58956912 L1P1 4361 + 3758 4320 58319 392 1 0 155 1 0 15 chain 23317 chr10 135534747 + 58972602 58972958 THE1D 372 - 0 344 114117 178 26 28 119 20 6 13 chain 2702 chr10 135534747 + 59010087 59010253 LTR12C 1709 + 790 1037 230215 20 0 81 16 112 112 18 chain 1331 chr10 135534747 + 59015053 59015129 L1PB1 5432 - 10 83 89435 14 7 6 11 1 0 21 2 1 20 chain 30427 chr10 135534747 + 59015241 59015559 AluYb8 318 - 0 318 83633 318 chain 6236 chr10 135534747 + 59016347 59016703 L1PB1 5432 - 939 1300 89435 14 0 4 30 0 1 15 0 1 48 1 0 248 chain 41432 chr10 135534747 + 59039305 59039927 L1PA8 5853 - 0 573 67377 93 1 0 19 2 1 42 6 5 14 1 0 24 0 4 43 2 0 43 2 1 68 0 4 134 42 4 19 13 1 54 chain 32898 chr10 135534747 + 59041621 59041972 L1PA2 6032 + 5681 6032 79370 351 chain 30427 chr10 135534747 + 59053472 59053790 AluYb8 318 - 0 318 83632 318 chain 7956 chr10 135534747 + 59070226 59070318 L1PA4 6152 + 6059 6152 171298 75 0 1 17 chain 97453 chr10 135534747 + 59081099 59082427 LTR12C 1709 + 0 1707 37441 81 0 2 194 4 0 9 3 7 45 0 43 82 4 6 181 0 119 68 1 0 8 0 160 66 0 47 106 0 4 357 31 40 23 18 12 47 chain 23329 chr10 135534747 + 59084367 59084650 L1PA6 6164 + 5877 6160 114037 283 chain 7636 chr10 135534747 + 59096133 59096625 LTR12D 1347 - 241 760 173316 24 1 0 30 366 353 26 0 41 45 chain 47800 chr10 135534747 + 59103457 59104130 LTR12_ 688 + 0 681 60623 53 0 41 44 18 2 26 0 1 37 21 4 240 13 12 221 chain 102781 chr10 135534747 + 59115480 59116642 L1PA4 6152 - 1348 2511 35977 139 1 0 377 0 2 645 chain 120161 chr10 135534747 + 59116642 59117976 L1PA4 6152 + 4817 6151 31004 1334 chain 6943 chr10 135534747 + 59140981 59141080 MSTA 426 + 249 369 177870 41 6 27 52 chain 160939 chr10 135534747 + 59176480 59178339 L1PA6 6164 + 4299 6161 23203 532 3 1 404 0 1 4 1 0 73 0 5 842 chain 27821 chr10 135534747 + 59187354 59187656 AluYg6 310 + 0 302 93630 302 chain 437748 chr10 135534747 + 59203241 59208662 L1PA7 6471 - 1 6427 9109 68 3 1 6 0 2 11 23 22 46 1 2 25 0 1 147 0 1 48 0 1 385 0 1 89 2 0 11 7 11 698 0 2 1066 2 0 244 0 6 13 10 14 21 1 0 6 0 1 188 2 1 173 0 1 301 0 4 129 0 1 67 0 988 272 0 3 985 11 0 5 3 0 206 0 7 146 chain 13709 chr10 135534747 + 59234818 59234993 THE1A 353 + 181 353 145571 116 3 0 56 chain 14970 chr10 135534747 + 59238194 59238529 LTR56 451 - 121 438 141409 29 24 29 68 36 34 32 27 8 32 15 14 49 1 0 22 chain 113034 chr10 135534747 + 59246631 59248018 L1P3 4156 - 169 1563 33367 241 0 1 145 0 1 98 1 2 251 8 12 95 0 1 448 1 0 62 4 3 18 0 1 15 chain 195609 chr10 135534747 + 59248061 59250515 L1PA7 6471 + 4015 6469 19533 587 3 6 76 0 1 120 4 3 135 6 0 12 3 0 88 0 1 259 0 5 37 1 0 7 1 2 267 1 0 680 20 21 27 0 2 108 2 0 10 chain 33068 chr10 135534747 + 59255906 59256296 L1PA7 6471 - 889 1279 79099 390 chain 3940 chr10 135534747 + 59256297 59256343 L1PA7 6471 + 5577 5623 208264 46 chain 5383 chr10 135534747 + 59256344 59256413 L1PA7 6471 + 5629 5698 191158 69 chain 64949 chr10 135534747 + 59256413 59257169 L1PA7 6471 + 5700 6456 50594 756 chain 69214 chr10 135534747 + 59277040 59277917 L1PA8 5853 - 7 942 48715 83 1 0 10 0 17 48 4 0 9 2 1 70 0 1 43 1 0 393 0 46 39 0 2 71 8 7 95 chain 114162 chr10 135534747 + 59291688 59293069 L1PA7 6471 + 5078 6459 33046 229 0 5 127 9 0 182 1 0 216 8 9 144 0 3 371 3 4 91 chain 47898 chr10 135534747 + 59297471 59297995 L1PA3long 6157 - 0 541 60560 515 0 17 9 chain 21166 chr10 135534747 + 59299033 59299277 L1PA5 6144 - 2 242 123323 7 4 0 233 chain 508643 chr10 135534747 + 59306056 59312127 L1PA5 6144 - 19 6143 6268 123 0 14 6 20 6 527 1 2 153 1 0 794 5 9 210 0 2 363 1 2 237 1 0 4 2 0 1129 0 1 43 5 0 75 0 3 41 0 4 70 0 1 4 12 4 820 0 2 185 0 1 120 9 0 18 1 4 567 0 1 46 0 2 398 1 15 63 1 40 15 chain 42811 chr10 135534747 + 59319720 59320313 L1MA2 4263 - 1693 2293 65638 11 1 5 19 11 12 197 1 2 42 0 1 4 1 0 38 0 1 268 chain 4759 chr10 135534747 + 59324374 59324430 THE1B 368 + 243 299 197821 56 chain 4909 chr10 135534747 + 59343897 59344155 LTR12B 2670 + 1644 1960 196170 16 120 16 37 8 0 24 15 188 15 12 9 11 chain 279298 chr10 135534747 + 59344680 59348737 L1PBa1 4058 + 12 4039 14678 24 10 0 11 16 13 46 1 3 88 1 0 229 14 12 7 6 0 110 16 15 46 10 9 31 1 3 204 12 14 227 5 4 191 21 20 17 1 6 110 1 0 4 4 1 142 0 27 32 1 0 4 1 0 256 0 1 4 1 0 92 19 20 187 3 12 339 1 0 9 56 2 18 7 8 50 7 12 54 8 0 79 0 1 233 1 28 137 0 1 80 1 3 147 6 7 111 1 0 29 6 7 52 0 2 23 9 7 18 11 10 5 0 2 34 4 2 80 4 5 19 4 5 20 1 0 7 6 0 15 2 0 19 17 12 14 2 1 12 24 19 10 1 0 16 1 0 41 chain 9185 chr10 135534747 + 59367474 59367613 Tigger1 2417 + 44 184 164635 89 16 17 34 chain 39222 chr10 135534747 + 59404862 59405452 LTR12_ 688 + 2 664 70425 23 1 0 113 24 8 102 2 1 103 0 103 105 17 0 50 15 19 35 chain 26098 chr10 135534747 + 59407438 59407744 L1PA4 6152 - 785 1094 99627 57 6 9 243 chain 68540 chr10 135534747 + 59407747 59408524 L1PA4 6152 + 5377 6152 49017 439 1 0 146 1 0 190 chain 47331 chr10 135534747 + 59410451 59411348 L1MA1 4479 - 289 1146 60947 16 2 0 5 77 62 28 1 0 96 23 22 9 3 0 8 22 21 64 1 0 12 7 5 13 1 0 70 6 5 14 3 1 24 1 0 98 0 4 94 2 0 128 11 7 16 7 0 35 chain 5914 chr10 135534747 + 59432174 59432244 L1P1 4361 + 4248 4317 186052 57 1 0 12 chain 54682 chr10 135534747 + 59437473 59438377 THE1C-int 1605 - 11 1585 55919 66 2 0 170 1 0 135 169 789 6 0 1 111 12 8 135 0 54 43 0 2 54 chain 11737 chr10 135534747 + 59437872 59438013 THE1C-int 1605 - 1297 1453 153316 88 0 14 38 0 1 15 chain 378092 chr10 135534747 + 59477341 59481930 L1PA7 6471 + 1813 6467 10812 221 0 1 202 0 1 458 2 1 55 1 2 116 0 1 163 1 0 467 1 0 112 2 0 139 4 0 246 6 0 375 0 22 590 0 1 464 0 47 640 0 2 39 5 8 219 0 1 61 chain 114133 chr10 135534747 + 59493659 59494968 L1PA5 6144 - 2 1313 33057 7 3 0 544 0 1 289 0 4 466 chain 80496 chr10 135534747 + 59506270 59507434 L1PA15 4387 - 100 1290 43393 17 6 3 29 0 6 15 2 1 4 4 0 12 8 34 36 1 0 26 8 7 164 1 0 41 7 5 15 0 2 58 2 0 170 0 1 89 3 7 36 14 15 319 1 2 76 chain 117195 chr10 135534747 + 59509434 59511064 L1PA10 4194 - 33 1658 32059 11 1 0 34 3 0 39 0 1 328 2 0 112 0 1 17 5 6 471 1 0 4 7 6 146 31 31 89 0 1 109 0 1 104 8 7 17 1 2 16 2 0 72 chain 19904 chr10 135534747 + 59518125 59518705 L1PB1 5432 + 4848 5422 127466 140 189 115 14 5 93 10 2 1 14 7 6 40 1 0 13 31 22 11 2 0 5 1 0 14 2 0 24 1 0 21 1 0 12 5 4 15 chain 4897 chr10 135534747 + 59518265 59518370 L1PB1 5432 - 216 314 195244 13 0 1 30 6 4 9 6 2 10 1 0 13 2 1 15 chain 7642 chr10 135534747 + 59537098 59537181 THE1C-int 1605 - 1395 1478 173273 83 chain 489942 chr10 135534747 + 59538606 59544731 L1PA6 6164 + 0 6154 7370 46 25 20 328 63 55 120 1 0 224 0 17 185 6 0 68 3 4 19 0 3 827 5 17 395 1 0 254 5 9 28 0 1 859 0 1 62 2 3 80 6 4 405 1 2 153 6 5 168 0 4 654 0 2 133 0 1 28 11 15 119 0 6 677 13 8 145 chain 2879 chr10 135534747 + 59545387 59545428 LTR29 598 + 0 41 227380 26 1 0 4 0 1 10 chain 133543 chr10 135534747 + 59553032 59555093 HUERS-P3b-int 2065 + 13 2030 27310 13 1 0 68 4 0 4 0 1 5 1 0 33 0 1 157 4 0 14 80 5 267 3 0 63 0 1 128 2 1 37 0 1 16 1 0 10 1 2 15 5 4 167 0 1 193 1 2 244 6 5 44 25 2 5 3 0 26 23 27 26 2 0 13 1 0 25 1 0 89 3 1 39 0 3 31 0 2 11 6 3 20 0 1 31 0 1 8 47 112 39 chain 20350 chr10 135534747 + 59573725 59574015 L1PA16 3655 - 62 351 126065 16 8 5 66 8 10 192 chain 21324 chr10 135534747 + 59583501 59583759 AluY 311 + 17 276 122776 115 0 1 143 chain 63653 chr10 135534747 + 59592124 59592921 LTR12 884 + 0 884 51168 25 9 8 24 0 41 233 0 47 506 chain 472812 chr10 135534747 + 59592954 59598704 HERV9-int 5642 + 5 5642 7949 790 2 1 231 79 0 79 3 0 637 0 1 889 1 0 53 9 10 462 1 5 40 1 0 7 6 8 341 0 1 112 1 2 236 0 1 1320 1 0 226 5 3 39 2 0 26 1 0 60 1 0 13 31 5 19 4 0 3 2 0 17 chain 49964 chr10 135534747 + 59601320 59601964 LTR12 884 + 0 752 59049 25 1 0 30 0 107 123 3 4 51 2 3 9 0 2 21 3 1 376 chain 197794 chr10 135534747 + 59614437 59617465 L1PA8A 6298 - 7 2658 19371 289 4 7 73 0 4 81 2 1 172 3 1 42 10 7 17 0 1 24 1 3 74 2 6 10 410 4 277 1 24 249 28 29 114 1 6 66 4 0 187 1 2 375 0 2 265 1 2 107 16 22 29 28 14 65 chain 204090 chr10 135534747 + 59645364 59647837 L1PA7 6471 + 3973 6469 18918 8 0 1 169 0 1 32 0 6 483 1 0 45 0 1 11 1 0 134 0 3 31 0 2 49 1 0 333 0 2 69 0 1 115 0 5 73 0 1 42 26 29 372 0 1 303 4 3 171 chain 115548 chr10 135534747 + 59654695 59655966 L1PA4 6152 - 1053 2324 32594 1271 chain 94456 chr10 135534747 + 59655966 59657022 L1PA4 6152 + 5091 6151 38197 1005 0 4 51 chain 37428 chr10 135534747 + 59657251 59657708 LTR2 463 - 0 463 72926 333 0 3 69 0 3 55 chain 15168 chr10 135534747 + 59674075 59674294 Tigger2a 444 - 54 285 140865 53 4 0 35 9 23 98 0 2 20 chain 92056 chr10 135534747 + 59693308 59694447 L1P1 4361 - 20 1169 38954 12 3 2 22 1 0 157 1 0 470 0 2 365 25 36 83 chain 59177 chr10 135534747 + 59694447 59695171 L1P1 4361 + 2481 3208 53156 286 7 11 398 1 0 32 chain 13761 chr10 135534747 + 59706217 59706571 THE1B 368 + 0 368 145401 15 2 0 32 29 39 17 30 31 28 45 52 14 16 15 63 7 6 56 chain 108004 chr10 135534747 + 59726129 59727445 L1PA7 6471 + 5157 6466 34712 464 1 0 833 6 0 12 chain 5484 chr10 135534747 + 59751627 59751698 L1PA7 6471 + 6400 6469 190177 59 2 0 10 chain 57107 chr10 135534747 + 59754429 59755159 L1PA8 5853 + 5122 5847 54463 442 1 0 43 3 1 10 7 11 49 14 10 52 2 1 19 1 0 87 chain 4628 chr10 135534747 + 59759018 59759073 LTR37A 408 + 309 364 199325 55 chain 25280 chr10 135534747 + 59771829 59772158 L1PA7 6471 - 1 331 103317 72 7 9 75 2 1 173 chain 38262 chr10 135534747 + 59777825 59778288 LTR2 463 + 0 463 71760 57 2 1 310 0 1 94 chain 21729 chr10 135534747 + 59780181 59780461 L1PB2 3958 + 3560 3836 121284 57 1 0 52 0 1 11 1 0 74 2 0 19 2 1 61 chain 81701 chr10 135534747 + 59781185 59782234 MER11C 1089 + 0 1063 42891 246 0 9 58 0 4 69 1 0 146 45 44 96 1 0 19 0 4 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 451372 chr10 135534747 + 59791044 59796624 L1PA7 6471 - 4 5530 8723 152 1 0 4 9 19 106 4 0 200 0 1 365 1 4 264 69 21 222 28 0 588 0 2 33 0 1 273 0 2 223 0 1 150 0 1 279 9 5 54 1 0 315 3 10 208 5 6 103 4 1 6 0 3 92 11 14 103 1 0 4 3 0 30 2 1 4 0 1 1310 0 1 4 1 0 67 0 4 269 chain 117598 chr10 135534747 + 59817785 59819348 L1PA10 4194 + 508 2086 31927 12 1 4 95 0 1 18 0 1 82 0 1 61 0 3 163 17 18 189 1 0 202 10 11 312 3 4 136 0 1 51 5 8 205 chain 26506 chr10 135534747 + 59821549 59821890 THE1A 353 - 11 353 98020 159 0 1 72 2 1 84 0 1 24 chain 126686 chr10 135534747 + 59821890 59823466 THE1A-int 1579 - 0 1551 28890 1074 29 3 62 3 2 8 0 1 12 0 1 388 chain 75883 chr10 135534747 + 59834076 59835128 L1PB3 3668 - 498 1835 45557 10 0 1 23 11 17 38 0 1 79 3 0 14 2 0 320 1 0 80 0 2 34 0 4 101 0 1 44 28 304 264 chain 35600 chr10 135534747 + 59853395 59853852 LTR2 463 - 0 457 75412 68 2 1 4 0 1 14 14 15 35 1 0 319 chain 7236 chr10 135534747 + 59859973 59860060 L1PA8 5853 - 0 87 175853 87 chain 186628 chr10 135534747 + 59888750 59890976 L1PA7 6471 + 4235 6460 20368 492 0 10 272 1 0 536 1 0 76 2 0 38 15 10 41 1 0 600 1 0 150 chain 14535 chr10 135534747 + 59894443 59894617 PABL_A 660 - 0 174 142786 174 chain 30562 chr10 135534747 + 59896980 59897421 MER57A1 433 + 0 433 83278 20 1 2 42 5 7 209 1 0 87 24 13 39 0 1 13 chain 13234 chr10 135534747 + 59898714 59898881 L1PA16 3655 + 3411 3578 147344 167 chain 19823 chr10 135534747 + 59901705 59902013 THE1B 368 - 61 368 127742 21 1 3 43 1 0 48 19 17 6 1 0 52 16 17 100 chain 29498 chr10 135534747 + 59907837 59908146 AluYa5 310 - 1 310 86645 309 chain 99182 chr10 135534747 + 59915312 59916533 L1PA6 6164 + 4935 6156 36977 379 0 1 666 34 33 142 chain 18030 chr10 135534747 + 59927320 59927584 L1PA8 5853 + 5594 5852 132778 14 2 0 70 2 1 14 4 3 38 8 7 19 1 0 92 chain 10613 chr10 135534747 + 59930142 59930263 L1PA6 6164 + 6036 6157 157757 121 chain 5716 chr10 135534747 + 59930275 59930395 MADE1 96 + 0 96 187968 34 40 16 46 chain 22548 chr10 135534747 + 59933084 59933447 THE1C 375 - 0 375 117814 26 1 0 73 0 1 19 0 3 54 3 0 5 19 22 57 29 38 77 chain 43364 chr10 135534747 + 59962446 59963057 Tigger1 2417 + 1179 1797 64976 18 0 15 134 3 0 13 0 3 39 21 22 64 5 1 184 5 0 125 chain 18386 chr10 135534747 + 59967047 59967303 L1PB2 3958 - 120 392 131827 63 1 0 22 2 0 45 0 4 23 1 0 12 0 3 8 0 14 27 1 0 51 chain 15498 chr10 135534747 + 59967315 59967507 L1PBa 3878 - 1708 1905 139906 106 2 7 84 chain 13665 chr10 135534747 + 59982638 59982899 L1PB1 5432 + 5185 5422 145724 35 2 1 16 1 0 43 1 0 14 2 0 8 16 6 18 3 1 5 1 0 12 2 0 26 1 0 22 2 1 11 1 0 14 1 0 4 chain 515067 chr10 135534747 + 59989490 59995577 L1PA6 6164 + 0 6160 5665 130 27 66 41 0 2 205 0 5 68 0 2 48 1 0 284 0 2 961 0 1 518 0 1 93 4 0 153 1 0 130 0 3 451 6 8 17 0 1 78 0 5 130 0 3 297 1 0 197 0 2 58 0 2 158 1 2 54 1 0 5 1 2 92 0 3 279 0 1 312 1 0 709 0 1 395 0 4 39 0 1 141 chain 138050 chr10 135534747 + 60003135 60004819 SVA_A 1864 + 10 1864 26477 5 3 0 594 4 0 81 2 0 50 1 153 131 3 1 49 1 4 12 1 0 18 0 36 64 2 0 67 3 0 124 4 0 465 chain 196178 chr10 135534747 + 60005403 60007576 L1PA3long 6157 + 3983 6156 19488 280 0 1 1888 1 0 4 chain 26417 chr10 135534747 + 60021682 60022006 L1PA6 6164 + 5834 6157 98348 182 2 1 140 chain 21324 chr10 135534747 + 60023021 60023295 AluSz6 309 + 20 296 122781 256 4 6 14 chain 2615 chr10 135534747 + 60023630 60023668 L1MC4 1079 + 771 804 231485 26 5 0 7 chain 27695 chr10 135534747 + 60030803 60031099 AluYa5 310 - 15 310 94061 213 1 0 82 chain 4796 chr10 135534747 + 60053942 60053999 LTR23 429 - 367 424 197400 57 chain 108511 chr10 135534747 + 60056409 60057607 L1PA3long 6157 - 1111 2309 34558 1198 chain 24682 chr10 135534747 + 60057608 60057883 L1PA3long 6157 + 5035 5310 106542 275 chain 76849 chr10 135534747 + 60057883 60058726 L1PA3long 6157 + 5314 6157 45058 843 chain 15420 chr10 135534747 + 60058755 60058923 AluY 311 + 128 296 140130 168 chain 36700 chr10 135534747 + 60087819 60088301 MER1A 529 - 9 496 73960 53 11 16 418 chain 3720 chr10 135534747 + 60094012 60094051 THE1C 375 + 1 40 211648 39 chain 11999 chr10 135534747 + 60163159 60163389 MER41D 557 - 305 557 152203 35 0 2 48 0 3 13 69 86 65 chain 27981 chr10 135534747 + 60170441 60170745 AluYa5 310 - 6 310 93066 52 0 1 119 1 0 132 chain 86992 chr10 135534747 + 60170851 60171972 L1PA8 5853 - 0 1114 40786 93 1 0 19 2 1 5 0 1 27 14 9 5 0 3 11 5 4 65 2 0 50 1 0 179 1 2 370 1 0 270 chain 509736 chr10 135534747 + 60177551 60183604 L1PA5 6144 - 12 6144 6187 838 1 0 666 1 0 340 0 1 130 1 5 220 0 1 254 1 2 6 0 1 278 0 1 773 0 35 58 0 3 206 2 1 474 0 5 26 0 1 357 0 4 277 9 0 307 2 1 271 9 16 277 0 1 90 41 53 15 4 18 6 0 1 113 chain 123892 chr10 135534747 + 60185542 60187078 THE1A-int 1579 - 5 1579 29736 66 0 1 23 6 7 342 4 5 45 0 14 38 0 1 543 0 1 44 0 19 425 chain 26460 chr10 135534747 + 60187098 60187431 THE1A 353 - 20 352 98207 30 11 11 182 1 0 109 chain 81119 chr10 135534747 + 60188056 60189013 L1PA5 6144 - 0 968 43129 104 0 1 51 0 7 546 1 0 159 1 5 95 chain 23448 chr10 135534747 + 60206308 60206777 L1PA15 4387 - 36 456 113390 18 5 0 20 14 12 31 6 3 50 14 9 23 2 1 53 1 0 27 1 0 71 49 20 62 2 0 20 chain 1494 chr10 135534747 + 60206791 60206973 THE1B 368 + 0 198 140126 22 45 62 85 1 0 29 chain 25428 chr10 135534747 + 60207586 60207927 LTR12C 1709 - 506 936 102556 85 3 50 154 0 2 35 1 41 63 chain 846 chr10 135534747 + 60208566 60208669 THE1B 368 + 255 358 140126 103 chain 55287 chr10 135534747 + 60215428 60216059 L1PA5 6144 - 8 640 55532 330 0 1 301 chain 11686 chr10 135534747 + 60224098 60224300 L1PB2 3958 - 120 318 153534 40 24 23 26 7 5 63 1 0 41 chain 30428 chr10 135534747 + 60234242 60234811 MLT2A1 477 + 0 477 83581 94 1 0 48 0 1 26 0 4 120 0 1 26 13 12 13 15 18 34 16 0 13 100 16 36 0 1 14 chain 10024 chr10 135534747 + 60265543 60265655 L1PA4 6152 - 189 301 160460 112 chain 13186 chr10 135534747 + 60265655 60265803 L1PA4 6152 + 6000 6152 147521 142 0 4 6 chain 299351 chr10 135534747 + 60282070 60285477 L1PA4 6152 + 2742 6152 13462 345 0 2 586 0 1 680 0 4 305 0 1 309 13 2 703 2 1 162 0 1 287 0 6 15 chain 110204 chr10 135534747 + 60286163 60287498 L1PA5 6144 - 12 1315 34157 72 39 0 223 0 1 484 0 3 51 1 5 204 6 5 255 chain 40602 chr10 135534747 + 60325591 60326543 L1PB1 5432 - 5 735 68435 5 2 0 18 1 0 12 1 0 22 50 46 16 16 6 6 2 0 15 1 0 31 2 30 52 3 1 8 2 0 3 2 0 9 2 1 12 1 0 11 246 25 119 1 0 70 1 3 108 1 0 101 chain 55312 chr10 135534747 + 60329166 60329825 L1PA7 6471 - 14 673 55515 659 chain 28960 chr10 135534747 + 60331674 60332179 L1PA11 4918 - 340 837 89177 11 2 0 12 6 5 11 13 9 10 23 13 19 16 13 81 2 1 12 1 6 229 9 17 48 chain 19020 chr10 135534747 + 60334787 60335037 L1PA8 5853 - 0 245 130064 93 1 0 19 2 1 29 1 0 19 1 0 10 1 0 74 chain 12686 chr10 135534747 + 60343011 60343336 L1PB1 5432 - 10 315 149501 11 10 7 11 1 0 23 1 0 24 2 0 10 0 13 12 9 0 15 3 0 16 5 4 40 1 0 15 13 9 30 52 44 21 chain 436737 chr10 135534747 + 60352749 60359420 L1PA7 6471 + 558 6467 9140 15 3 0 9 6 7 36 25 12 84 31 36 89 1 2 6 1 0 33 4 5 360 0 19 744 0 1 448 0 1 7 0 4 52 0 1 110 0 2 58 0 4 524 0 1 97 1 0 9 0 2 236 0 4 221 16 314 132 3 4 121 0 1 108 0 4 180 7 11 264 1134 30 327 0 1 254 13 14 55 0 3 218 3 6 611 3 0 12 chain 73239 chr10 135534747 + 60356820 60357910 MER11A 1151 - 0 1143 46908 80 1 5 61 46 24 60 0 1 31 21 3 24 43 0 12 0 26 134 5 8 143 0 1 94 0 1 147 8 4 61 0 4 11 0 1 37 0 99 71 chain 13201 chr10 135534747 + 60366172 60366332 L1PA3long 6157 + 5996 6156 147464 6 0 1 149 1 0 4 chain 204326 chr10 135534747 + 60413444 60415664 L1PA2 6032 - 4 2224 18903 2220 chain 68766 chr10 135534747 + 60415664 60416418 L1PA2 6032 + 3072 3825 48911 142 1 0 611 chain 22144 chr10 135534747 + 60418833 60419213 L1PA15 4387 + 3992 4365 119609 26 0 1 85 1 0 13 4 11 57 1 0 14 0 4 7 4 0 7 2 1 49 6 3 46 3 1 10 17 11 18 1 0 9 chain 215797 chr10 135534747 + 60435628 60441392 L1PA7 6471 + 31 5940 7230 196 21 32 145 1 2 235 2 76 22 0 1 42 0 4 199 2 0 553 1 0 17 2 3 167 6 11 299 1 0 17 1 3 76 0 1 31 0 4 246 8 4 215 0 1 73 0 4 23 0 5 92 0 1 28 0 1 366 0 1 910 2 0 180 0 2 46 9 12 53 0 8 102 11 1 85 0 4 40 0 8 306 0 1 48 0 1 435 0 5 126 19 29 37 0 1 36 0 1 65 0 4 167 chain 18848 chr10 135534747 + 60441403 60441620 LTR12_ 688 - 7 224 130523 217 chain 510540 chr10 135534747 + 60441627 60447744 L1PA5 6144 - 1 6144 6116 10 3 1 133 1 0 630 19 6 203 2 0 62 0 1 473 1 3 193 6 7 73 0 4 36 0 1 24 0 1 572 0 1 34 1 0 423 0 5 15 1 0 74 1 0 7 1 0 34 0 4 420 0 3 376 0 1 116 1 3 749 4 1 17 0 1 257 9 0 82 5 7 238 0 1 162 0 3 423 5 4 71 12 24 20 0 14 62 0 2 56 chain 38215 chr10 135534747 + 60447751 60448270 LTR12 884 - 209 884 71820 260 5 6 25 21 176 208 chain 19581 chr10 135534747 + 60448270 60448793 L1PA7 6471 + 5940 6464 7230 260 0 1 263 chain 100671 chr10 135534747 + 60452623 60453757 L1PA4 6152 - 1 1136 36592 166 8 9 960 chain 16885 chr10 135534747 + 60466279 60466626 THE1D 372 + 0 347 135879 15 0 2 38 27 18 36 6 5 42 1 0 4 70 79 108 chain 22613 chr10 135534747 + 60467473 60467751 AluSp 311 - 28 306 117516 82 0 1 43 1 0 152 chain 5737 chr10 135534747 + 60473721 60473826 MER20 218 + 36 142 187758 4 1 0 27 13 16 5 1 0 54 chain 211664 chr10 135534747 + 60496868 60499274 L1PA4 6152 - 11 2434 18382 58 2 0 547 5 16 626 0 1 541 0 4 303 0 3 324 chain 21130 chr10 135534747 + 60596437 60596698 AluY 311 + 3 260 123446 106 0 1 16 5 0 134 chain 3467 chr10 135534747 + 60610346 60610387 L1MC1 2226 + 1353 1394 215847 41 chain 3135 chr10 135534747 + 60611787 60611845 L1MC1 2226 + 2068 2119 222254 15 5 0 20 3 1 15 chain 4213 chr10 135534747 + 60613321 60613494 L1MA4 2864 - 62 193 204386 35 2 0 18 103 63 15 chain 19949 chr10 135534747 + 60618573 60618876 L1MA1 4479 - 307 601 127308 8 2 0 13 1 0 12 1 0 32 2 0 29 1 0 17 4 6 103 3 0 5 2 1 68 chain 40238 chr10 135534747 + 60620754 60621205 LTR7 482 - 0 482 68961 187 0 31 264 chain 298017 chr10 135534747 + 60622466 60626638 HERVH-int 3825 - 0 3825 13531 487 8 218 1049 0 1 354 4 31 552 0 4 350 1 0 49 11 30 69 4 1 12 1 0 14 28 0 15 0 1 8 1 0 10 1 0 8 64 0 22 13 8 122 516 0 188 0 11 211 chain 42459 chr10 135534747 + 60625774 60626233 L1PA3long 6157 - 9 468 66062 459 chain 39625 chr10 135534747 + 60626648 60627091 LTR7 482 - 8 482 69855 179 0 31 264 chain 40367 chr10 135534747 + 60641273 60641787 MER75 514 - 0 514 68781 24 0 2 113 2 0 375 chain 13906 chr10 135534747 + 60647180 60647344 MLT2A1 477 - 309 473 144897 164 chain 23459 chr10 135534747 + 60677910 60678203 AluY 311 + 6 296 113321 106 8 6 15 1 0 163 chain 17413 chr10 135534747 + 60687090 60687429 THE1B 368 - 19 360 134471 39 5 4 53 72 76 60 9 11 9 4 1 88 chain 25663 chr10 135534747 + 60713735 60714086 MER39 703 - 11 370 101439 114 4 6 43 0 4 50 4 5 119 0 1 17 chain 15625 chr10 135534747 + 60724469 60724675 MER34A1 583 - 363 583 139507 103 0 15 32 4 3 67 chain 3260 chr10 135534747 + 60729818 60729854 MLT1D 503 + 272 308 219778 36 chain 6841 chr10 135534747 + 60735320 60735426 MER31B 477 - 260 359 178649 16 0 3 8 11 1 71 chain 6114 chr10 135534747 + 60756093 60756202 L1MB2 1706 + 1592 1694 184314 6 1 0 13 1 0 9 1 2 35 7 1 36 chain 22439 chr10 135534747 + 60762326 60762599 AluSc5 308 + 10 282 118305 121 1 0 151 chain 64588 chr10 135534747 + 60788877 60789625 L1PA5 6144 - 0 749 50753 458 1 2 289 chain 516669 chr10 135534747 + 60797610 60803746 L1PA6 6164 - 3 6164 5521 1791 0 2 157 3 1 514 1 0 174 0 1 297 2 1 883 6 8 31 0 5 708 1 0 334 4 0 182 1 0 71 1 18 518 12 11 114 17 25 11 6 7 297 chain 63999 chr10 135534747 + 60810750 60811470 L1PA5 6144 - 4 724 51007 720 chain 23804 chr10 135534747 + 60825887 60826206 THE1B 368 + 0 368 111459 45 0 52 75 2 1 27 2 0 168 chain 3409 chr10 135534747 + 60829892 60829932 MLT2B3 573 - 5 45 216942 40 chain 21628 chr10 135534747 + 60881984 60882210 AluYa5 310 - 0 226 121664 226 chain 348970 chr10 135534747 + 60944413 60948659 L1PA4 6152 - 4 3936 11638 145 1 0 175 315 0 1373 0 3 720 1 0 869 0 1 4 2 1 641 chain 28693 chr10 135534747 + 60944744 60945049 AluYa5 310 - 5 310 90353 305 chain 310721 chr10 135534747 + 60957813 60961358 L1PA5 6144 - 2 3542 12975 7 4 0 162 5 6 82 1 0 121 2 1 469 1 0 605 0 1 2086 chain 79340 chr10 135534747 + 60962763 60963668 L1PA5 6144 + 5219 6125 43890 20 0 1 31 0 1 22 1 0 831 chain 300700 chr10 135534747 + 60966895 60970829 L1PA7 6471 + 5 6468 13385 336 0 315 129 307 0 1110 1 0 619 0 2514 266 10 0 327 0 3 481 0 2 200 9 8 44 0 1 18 7 20 70 chain 31583 chr10 135534747 + 60989295 60989732 MER57A1 433 - 2 433 81520 35 0 3 111 15 3 52 23 25 90 0 1 111 chain 3702 chr10 135534747 + 60991870 60991909 L1PA6 6164 + 5914 5953 211905 39 chain 27314 chr10 135534747 + 60998918 60999290 THE1B 368 - 0 368 95227 16 1 0 15 3 4 221 9 5 107 chain 21953 chr10 135534747 + 61037686 61038029 THE1B 368 - 0 368 120412 98 61 72 30 1 0 109 0 15 44 chain 10385 chr10 135534747 + 61056809 61056937 MER85 139 + 0 138 158763 89 0 10 39 chain 8294 chr10 135534747 + 61063365 61063470 MSTB2 466 + 15 113 169435 7 7 0 91 chain 30765 chr10 135534747 + 61080275 61080672 MER57B1 401 - 0 401 82927 254 14 18 129 chain 44716 chr10 135534747 + 61094160 61094675 L1PA4 6152 + 5633 6152 63363 265 1 0 108 0 7 134 2 0 5 chain 37582 chr10 135534747 + 61107291 61107772 L1PA7 6471 - 5 484 72708 6 2 0 25 0 9 8 10 1 209 1 2 140 2 1 78 chain 40548 chr10 135534747 + 61116461 61117004 MLT2A2 560 + 0 560 68516 33 17 22 346 5 16 73 0 1 69 chain 11380 chr10 135534747 + 61127477 61127634 MER30 238 + 59 238 154781 35 0 2 10 4 24 108 chain 24027 chr10 135534747 + 61128253 61128550 AluSc5 308 - 11 308 110178 297 chain 30699 chr10 135534747 + 61158098 61158480 L1PA7 6471 - 1 385 83039 154 7 8 170 0 1 51 chain 90350 chr10 135534747 + 61158519 61159558 L1PA5 6144 - 5 1045 39522 184 4 5 573 1 0 253 0 1 24 chain 518540 chr10 135534747 + 61168097 61174214 L1PA5 6144 - 12 6144 5327 976 5 6 19 1 0 1449 1 0 518 1 0 1189 0 1 664 1 2 137 13 5 331 0 17 498 0 1 151 22 48 29 21 0 91 chain 496784 chr10 135534747 + 61181780 61187333 L1PA3long 6157 - 0 5537 7020 147 3 4 102 0 1 2430 29 8 1722 2 0 5 5 7 57 0 1 36 0 2 1015 chain 11059 chr10 135534747 + 61205762 61206010 MER44A 345 + 9 252 155973 24 46 47 21 32 22 48 0 7 12 3 0 62 chain 13896 chr10 135534747 + 61212002 61212157 L1PA4 6152 + 5988 6143 144930 155 chain 461461 chr10 135534747 + 61229885 61235993 L1PA7 6471 + 5 6461 8350 198 99 107 6 0 1 87 6 0 66 2 1 106 13 10 155 0 5 51 15 80 147 0 1 225 0 19 214 15 18 212 3 0 262 0 1 85 9 1 349 0 1 6 10 1 212 4 0 354 1 2 108 0 4 337 0 1 46 1 2 11 1 0 37 1 0 10 0 4 32 0 5 265 1 2 96 0 2 50 12 0 6 11 0 603 0 1 175 12 8 133 0 1 64 5 6 47 0 1 131 0 1 117 5 4 317 1 4 102 5 291 301 0 1 6 2 1 58 5 0 82 chain 44372 chr10 135534747 + 61245040 61245585 L1PA7 6471 - 10 556 63728 137 13 14 395 chain 80084 chr10 135534747 + 61261857 61262863 L1PA8 5853 + 4831 5853 43547 178 1 3 75 1 0 150 0 22 303 1 0 46 2 0 71 1 0 14 1 0 47 2 1 22 1 0 90 chain 497347 chr10 135534747 + 61287959 61294119 L1PA6 6164 + 0 6162 6991 351 64 65 28 27 8 115 1 0 209 0 1 4 9 25 405 19 18 4 0 1 21 0 1 20 0 1 390 0 1 662 1 2 193 0 1 149 5 6 503 5 6 52 0 2 428 7 3 277 0 1 4 1 0 976 0 1 4 1 0 385 1 2 691 0 1 34 3 0 111 chain 197780 chr10 135534747 + 61299629 61301786 L1PA3long 6157 + 3989 6146 19374 2157 chain 194529 chr10 135534747 + 61324914 61327144 L1PA5 6144 - 0 2238 19624 836 0 1 29 1 2 359 1 0 4 0 1 121 0 6 879 chain 16591 chr10 135534747 + 61365387 61365986 L1PA8 5853 - 0 275 136690 92 329 9 11 2 1 14 1 2 36 12 10 63 9 7 30 chain 37432 chr10 135534747 + 61383488 61384078 MER41B 635 - 0 590 72922 81 0 5 69 16 5 7 0 11 60 22 21 162 22 29 56 12 1 83 chain 4951 chr10 135534747 + 61391336 61391400 MER53 195 + 123 187 195693 64 chain 85460 chr10 135534747 + 61397093 61398171 MER11B 1079 - 6 1079 41358 18 5 6 172 0 1 111 5 0 93 1 0 413 3 0 9 0 1 186 5 6 57 chain 310157 chr10 135534747 + 61419139 61423517 L1PA7 6471 + 2676 6461 12999 65 0 12 750 1 0 150 0 1 182 2 0 795 0 1 39 6 10 27 0 2 239 1 0 128 0 14 533 1 4 15 2 3 24 322 0 184 0 22 30 0 1 186 328 0 368 chain 17995 chr10 135534747 + 61437647 61437845 L1PA3long 6157 - 1 199 132873 198 chain 29978 chr10 135534747 + 61438282 61438600 AluYb8 318 - 0 318 84881 318 chain 146416 chr10 135534747 + 61455824 61457495 SVA_D 2077 + 0 2067 25103 4 1 0 6 1 0 6 1 0 526 0 40 142 0 3 34 3 0 142 0 135 183 1 225 621 chain 105848 chr10 135534747 + 61480830 61482406 L1PB1 5432 - 33 1582 35297 7 1 0 22 1 0 23 26 21 18 18 8 4 1 0 13 0 12 34 1 0 16 2 1 50 6 4 7 2 0 3 2 0 12 1 0 10 1 0 18 50 18 288 1 9 7 15 0 168 3 0 95 0 4 137 1 16 85 0 3 34 0 8 135 1 2 43 0 1 71 1 0 142 chain 43257 chr10 135534747 + 61484813 61485328 MER9a3 513 - 0 513 65110 217 0 2 38 1 0 22 4 0 56 0 1 177 chain 25858 chr10 135534747 + 61486283 61486681 LTR2 463 - 0 463 100610 47 1 0 17 36 37 40 0 65 28 18 19 115 2 1 94 chain 426203 chr10 135534747 + 61486681 61491776 Harlequin-int 5206 - 0 5081 9391 144 1 2 531 4 5 126 3 4 569 1 2 141 4 0 35 15 0 810 1 0 48 0 11 1239 6 7 99 0 1 107 5 12 20 2 1 285 1 0 45 0 1 105 1 0 373 4 0 107 9 0 124 4 1 126 chain 36228 chr10 135534747 + 61493350 61493800 LTR2 463 - 0 451 74590 88 10 11 352 chain 3287 chr10 135534747 + 61494073 61494154 MER5A1 166 - 36 119 219251 29 1 0 13 25 28 13 chain 15621 chr10 135534747 + 61500874 61501111 Tigger3b 1229 + 745 979 139521 25 9 6 74 11 0 10 1 12 107 chain 123788 chr10 135534747 + 61503433 61504880 SVA_B 1603 + 8 1600 29776 16 4 28 230 0 1 430 0 1 59 0 40 51 1 0 29 0 83 38 3 0 586 chain 2857 chr10 135534747 + 61513447 61513479 L1PA6 6164 + 5973 6005 227700 32 chain 12716 chr10 135534747 + 61513483 61513634 L1PA6 6164 + 6005 6156 149397 151 chain 42189 chr10 135534747 + 61519702 61520212 MER9a1 513 + 0 512 66408 74 10 12 426 chain 24077 chr10 135534747 + 61524793 61525070 MER9a2 513 - 236 513 109888 277 chain 232421 chr10 135534747 + 61525070 61527794 Harlequin-int 5206 - 905 3631 17177 812 0 2 1912 chain 52330 chr10 135534747 + 61527886 61528525 Harlequin-int 5206 - 3634 4292 57415 229 0 20 30 2 1 115 3 4 166 1 0 93 chain 35064 chr10 135534747 + 61528525 61528952 Harlequin-int 5206 - 4293 4722 76097 364 0 2 63 chain 9226 chr10 135534747 + 61528960 61529069 Harlequin-int 5206 - 4722 4831 164423 109 chain 5169 chr10 135534747 + 61529100 61529158 Harlequin-int 5206 - 4840 4898 193360 58 chain 13538 chr10 135534747 + 61529158 61529329 Harlequin-int 5206 - 4900 5072 146223 155 2 3 14 chain 35146 chr10 135534747 + 61530791 61531247 LTR2 463 - 0 463 75999 33 0 6 38 26 27 359 chain 23916 chr10 135534747 + 61536352 61536693 THE1A 353 - 0 353 110835 40 0 5 26 23 12 159 1 0 11 0 19 81 chain 131815 chr10 135534747 + 61536693 61538276 THE1A-int 1579 - 0 1576 27670 609 4 5 324 7 0 189 1 0 449 chain 26372 chr10 135534747 + 61538279 61538633 THE1A 353 - 0 353 98526 139 6 6 98 6 5 105 chain 46794 chr10 135534747 + 61543607 61544142 L1P1 4361 - 40 573 61373 16 1 0 155 1 0 362 chain 50199 chr10 135534747 + 61544142 61544687 L1PA2 6032 + 5487 6032 58872 545 chain 35306 chr10 135534747 + 61545085 61545477 L1PA4 6152 - 9 401 75788 392 chain 83648 chr10 135534747 + 61555248 61556182 L1PA3long 6157 - 15 950 42055 168 3 0 666 0 4 97 chain 6586 chr10 135534747 + 61626862 61626953 LTR32 486 + 21 113 180568 33 1 2 57 chain 23567 chr10 135534747 + 61650491 61650765 L1PA5 6144 - 0 272 112761 210 2 0 62 chain 24405 chr10 135534747 + 61657014 61657301 AluSp 311 - 15 299 108050 164 2 0 89 1 0 31 chain 26870 chr10 135534747 + 61713329 61713689 L1PA7 6471 - 1 361 96743 12 2 1 24 9 0 7 0 9 92 12 12 181 0 1 21 chain 19181 chr10 135534747 + 61727307 61727507 AluYb8 318 + 113 313 129582 200 chain 23358 chr10 135534747 + 61735727 61736102 THE1B 368 - 0 368 113885 176 32 23 34 23 24 62 1 2 47 chain 10898 chr10 135534747 + 61761954 61762083 L1PA16 3655 + 3431 3560 156597 129 chain 6533 chr10 135534747 + 61774569 61774665 MER2 342 - 141 237 180978 79 1 0 4 1 2 11 chain 23200 chr10 135534747 + 61775420 61775815 LOR1b 457 + 47 457 114677 34 2 0 63 1 0 21 1 5 12 0 1 5 21 30 44 38 42 153 chain 2824 chr10 135534747 + 61777863 61777902 MIRb 242 - 115 152 228313 5 2 0 32 chain 22798 chr10 135534747 + 61892009 61892365 THE1B 368 + 0 368 116583 172 1 0 19 2 4 6 2 0 8 1 5 13 19 28 51 1 0 4 1 2 56 chain 39258 chr10 135534747 + 61915310 61915855 MLT2A2 560 + 0 560 70382 116 0 1 32 0 1 33 1 0 13 13 12 55 0 1 133 5 16 35 0 3 39 0 1 8 1 0 6 0 1 6 1 0 48 chain 392029 chr10 135534747 + 61974170 61979061 L1PA8A 6298 - 7 4987 10393 799 0 3 452 7 19 189 5 4 276 1 83 108 3 5 82 0 1 48 1 0 350 0 1 158 2 1 92 18 19 128 0 2 115 3 4 23 0 5 239 2 0 116 0 6 257 0 1 200 27 0 437 3 1 68 0 2 289 13 17 380 chain 8164 chr10 135534747 + 61997378 61997467 L1PA3long 6157 - 0 89 170154 89 chain 3726 chr10 135534747 + 62007370 62007411 L1MB2 1706 - 212 253 211525 41 chain 19061 chr10 135534747 + 62066216 62066464 L1PB2 3958 - 127 372 129935 56 1 0 93 2 1 63 1 0 32 chain 227600 chr10 135534747 + 62088266 62091032 L1PA7 6471 + 3677 6468 17445 194 10 19 107 3 0 490 0 1 337 2 0 609 0 4 183 0 10 69 2 3 56 1 6 438 1 0 87 33 34 144 chain 57125 chr10 135534747 + 62092919 62093598 L1PA7 6471 - 10 693 54448 44 0 1 423 1 4 211 chain 21209 chr10 135534747 + 62124169 62124456 L1PA7 6471 + 6178 6466 123181 129 0 7 7 15 8 57 1 2 78 chain 17324 chr10 135534747 + 62125820 62126106 AluSz 310 + 10 298 134724 43 9 6 92 41 46 101 chain 4387 chr10 135534747 + 62178445 62178528 MER53 195 - 89 168 202111 22 21 17 40 chain 17178 chr10 135534747 + 62191332 62191563 L1PA7 6471 + 6237 6465 135092 70 9 8 144 2 0 6 chain 25792 chr10 135534747 + 62195575 62195876 AluYd8 298 + 0 286 100907 158 1 0 94 1 0 26 13 0 8 chain 6373 chr10 135534747 + 62202153 62202234 MER2 342 - 118 199 182225 81 chain 48965 chr10 135534747 + 62283000 62283540 L1PA3long 6157 - 0 539 59775 259 1 0 280 chain 27916 chr10 135534747 + 62284097 62284463 THE1B 368 + 0 368 93299 13 2 0 22 5 10 127 2 1 195 chain 12754 chr10 135534747 + 62318901 62319211 L1PB1 5432 - 10 298 149238 18 1 0 11 31 37 10 2 0 14 1 0 8 2 0 16 16 6 7 2 0 14 1 0 44 1 0 16 2 1 42 26 20 14 1 0 10 chain 18793 chr10 135534747 + 62337114 62337479 THE1B 368 + 0 368 130700 43 8 6 30 2 3 12 2 3 16 0 1 5 14 13 37 1 0 23 8 0 9 4 8 4 0 1 14 7 15 63 14 13 49 chain 38694 chr10 135534747 + 62341587 62342033 L1PA7 6471 + 6020 6464 71157 6 2 0 438 chain 53275 chr10 135534747 + 62394139 62394811 LTR12_ 688 + 0 688 56843 24 1 0 63 17 34 21 0 1 328 1 0 217 chain 243365 chr10 135534747 + 62399886 62402546 L1PA3long 6157 + 3484 6157 16597 801 0 9 1714 0 4 145 chain 28049 chr10 135534747 + 62402878 62403253 MLT2A1 477 + 1 385 92831 30 0 4 136 7 6 88 1 8 50 1 0 62 chain 28613 chr10 135534747 + 62416719 62417090 THE1B 368 - 0 368 90682 171 2 0 23 6 5 169 chain 14969 chr10 135534747 + 62447392 62447720 L1MB1 2102 + 1672 1997 141415 14 1 0 52 1 0 9 1 0 7 1 0 35 24 25 23 6 4 16 37 38 28 0 3 10 8 6 55 chain 19907 chr10 135534747 + 62449874 62450173 L1P2 5180 + 2 294 127454 148 1 0 44 1 0 15 6 0 9 16 20 9 1 0 24 2 0 23 chain 537356 chr10 135534747 + 62452718 62458655 L1PA3long 6157 + 70 6142 3263 215 2 1 106 0 5 371 8 136 141 0 1 518 1 3 853 3 0 2892 0 3 827 chain 13845 chr10 135534747 + 62458727 62459022 L1PB1 5432 + 5152 5419 145081 6 4 0 11 2 0 51 2 1 16 1 0 44 48 36 10 3 1 4 1 0 14 2 0 24 1 0 22 1 0 12 1 0 15 chain 6535 chr10 135534747 + 62461436 62461513 MER83C 372 + 219 296 180968 77 chain 3298 chr10 135534747 + 62548318 62548376 LTR41 747 + 671 728 219011 33 8 7 17 chain 25395 chr10 135534747 + 62600585 62600886 AluY 311 + 0 295 102706 128 4 0 154 2 0 13 chain 3872 chr10 135534747 + 62658690 62658736 MADE1 96 - 50 96 209275 46 chain 4077 chr10 135534747 + 62672628 62672674 U2 167 - 114 160 206222 46 chain 9268 chr10 135534747 + 62687055 62687164 MLT2A2 560 - 451 560 164230 109 chain 25246 chr10 135534747 + 62705658 62705956 AluSg 306 + 2 301 103494 7 0 1 291 chain 18932 chr10 135534747 + 62726447 62726656 L1PA5 6144 - 0 209 130284 209 chain 123600 chr10 135534747 + 62730985 62732454 L1PA7 6471 + 4992 6470 29843 457 0 1 166 1 4 66 12 14 295 0 2 75 0 1 63 0 1 329 1 0 4 chain 485422 chr10 135534747 + 62762698 62768792 L1PA6 6164 - 8 6164 7544 410 0 10 343 0 2 117 0 1 132 0 1 228 0 20 175 0 1 157 0 11 356 0 1 356 0 1 310 0 2 7 0 29 228 22 22 57 12 0 688 4 0 160 46 47 330 1 0 735 29 28 370 0 17 235 1 0 119 19 0 39 27 29 287 0 1 94 chain 56275 chr10 135534747 + 62793472 62794208 LTR17 781 - 25 781 54975 37 17 39 140 0 1 212 1 0 135 17 16 120 1 0 56 chain 315914 chr10 135534747 + 62794681 62798472 HERV17-int 4347 - 117 4335 12770 623 0 1 114 6 10 341 1 0 88 0 1 458 0 18 70 0 1 965 1 0 4 5 6 58 7 8 561 0 1 137 0 430 26 1 3 35 33 6 126 2 1 6 0 1 18 2 0 35 1 0 51 1 0 15 chain 57981 chr10 135534747 + 62798922 62799671 LTR17 781 - 10 781 53985 38 1 23 170 0 1 212 1 0 144 1 0 113 2 0 14 1 0 23 0 4 29 chain 96785 chr10 135534747 + 62800248 62801619 LTR12C 1709 + 0 1709 37619 58 24 26 193 0 17 44 0 43 16 1 2 60 0 1 4 32 28 158 0 278 143 0 47 97 46 15 311 1 0 86 24 9 73 chain 112551 chr10 135534747 + 62814959 62816196 L1PA2 6032 - 0 1241 33399 43 0 3 98 1 2 1095 chain 152204 chr10 135534747 + 62816196 62817894 L1P1 4361 + 2233 4117 24311 1377 0 186 321 chain 29368 chr10 135534747 + 62832471 62832919 Tigger3b 1229 - 570 1024 87214 39 19 25 8 1 0 8 12 9 72 0 1 202 2 0 10 1 6 74 chain 18186 chr10 135534747 + 62832919 62833184 L1PA8 5853 + 5578 5848 132367 30 2 0 71 1 0 41 13 22 14 6 5 87 chain 47532 chr10 135534747 + 62853745 62854290 L1PA5 6144 + 5571 6144 60820 121 1 12 79 0 17 344 chain 20635 chr10 135534747 + 62882013 62882256 L1PA4 6152 + 5893 6135 125171 112 1 0 130 chain 4592 chr10 135534747 + 62938893 62938970 MADE1 96 - 1 95 199719 33 12 29 32 chain 10878 chr10 135534747 + 62951472 62951605 THE1C 375 - 235 368 156672 133 chain 39799 chr10 135534747 + 62961206 62961651 L1PA4 6152 - 6 450 69627 334 1 0 110 chain 56805 chr10 135534747 + 62961651 62962271 L1PA4 6152 + 5063 5684 54650 314 0 1 306 chain 19395 chr10 135534747 + 62968436 62968699 L1PA7 6471 - 4 265 128961 9 3 0 29 1 0 108 1 2 10 5 6 97 chain 54216 chr10 135534747 + 62992794 62993510 MER4-int 2692 + 74 799 56215 25 1 0 16 1 0 299 0 2 126 1 10 173 11 9 10 0 2 53 chain 9017 chr10 135534747 + 62993603 62993723 MER4-int 2692 - 1055 1187 165513 11 0 8 71 0 4 38 chain 150294 chr10 135534747 + 62995198 62997360 L1PB1 5432 + 3281 5404 24564 30 5 6 132 0 1 268 0 3 5 2 0 13 3 0 84 1 5 134 20 8 51 0 2 262 1 0 24 9 8 68 1 0 210 4 5 26 2 0 52 0 1 23 0 2 4 1 0 395 1 2 9 5 0 24 8 6 12 2 0 3 2 0 9 2 0 52 2 1 16 5 4 40 1 0 15 1 0 4 2 0 9 6 0 17 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 chain 21470 chr10 135534747 + 63037403 63037657 L1PA4 6152 + 5899 6150 122256 246 3 0 5 chain 3622 chr10 135534747 + 63049335 63049376 MER3 215 + 1 42 213299 41 chain 14153 chr10 135534747 + 63050338 63050576 L1PA14 3548 - 92 323 144032 42 3 2 14 1 0 5 1 0 12 10 8 39 2 1 43 2 1 64 chain 45994 chr10 135534747 + 63093847 63094365 L1P1 4361 - 33 549 62046 23 1 0 155 1 0 338 chain 66242 chr10 135534747 + 63094365 63095092 L1PA2 6032 + 5303 6030 49986 727 chain 22951 chr10 135534747 + 63130670 63130983 Tigger3b 1229 - 54 355 115856 105 0 1 53 0 1 118 0 1 14 15 0 8 chain 155975 chr10 135534747 + 63137185 63139205 L1P2 5180 - 3064 5153 23818 203 0 8 140 1 6 392 2 1 334 0 30 47 0 25 136 9 7 74 1 0 30 4 0 168 1 0 8 1 0 204 11 12 44 1 0 86 7 18 116 chain 194535 chr10 135534747 + 63139205 63141445 L1PA5 6144 + 3897 6144 19622 83 0 1 216 0 1 167 0 1 358 0 1 465 3 2 101 1 5 846 chain 201089 chr10 135534747 + 63151739 63154124 L1PA7 6471 - 17 2411 19134 694 2 0 139 1 0 552 0 8 112 2 0 224 3 1 282 4 0 109 8 3 152 0 17 101 chain 4905 chr10 135534747 + 63236449 63236528 MIR 256 + 71 152 196224 11 9 11 59 chain 8640 chr10 135534747 + 63239750 63239946 MER3 215 + 13 215 167535 37 52 47 33 10 15 24 1 7 39 chain 4207 chr10 135534747 + 63241615 63241665 LTR16A 446 + 377 427 204456 50 chain 4123 chr10 135534747 + 63255932 63255992 MLT1E2 623 + 564 623 205619 27 2 1 31 chain 24675 chr10 135534747 + 63265300 63265603 AluSc 308 - 11 307 106579 14 2 0 73 5 0 209 chain 75540 chr10 135534747 + 63281303 63282120 L1PA2 6032 - 3 820 45752 817 chain 36890 chr10 135534747 + 63282120 63282518 L1PA2 6032 + 4687 5085 73420 398 chain 135993 chr10 135534747 + 63289407 63291319 L1MA3 4352 + 2355 4277 26836 366 1 2 308 0 3 13 9 10 130 1 0 14 0 9 59 0 1 318 3 4 355 5 10 134 80 62 15 0 3 9 3 2 16 0 4 15 0 4 38 2 0 18 chain 33247 chr10 135534747 + 63292476 63292850 L1PA4 6152 - 9 382 78805 251 1 0 122 chain 8967 chr10 135534747 + 63292850 63292953 L1PA4 6152 + 5681 5784 165785 103 chain 12141 chr10 135534747 + 63293202 63293346 L1PA8A 6298 - 10 154 151649 144 chain 37989 chr10 135534747 + 63293744 63294260 MLT2A2 560 - 0 560 72149 54 0 1 4 5 4 35 0 2 43 0 11 50 16 48 125 1 0 183 chain 151759 chr10 135534747 + 63311727 63313664 L1PA10 4194 + 1374 3317 24368 367 4 0 8 8 10 79 1 2 673 5 3 5 0 2 87 1 2 5 1 0 6 0 1 47 0 4 454 0 1 27 0 1 159 chain 32015 chr10 135534747 + 63325345 63325775 MLT2A1 477 - 0 477 80840 40 0 42 32 2 1 39 1 0 123 0 1 25 1 5 26 1 2 29 0 1 111 chain 452918 chr10 135534747 + 63325777 63331625 HERVL-int 5654 - 2 5654 8657 104 0 1 89 0 3 24 0 1 205 0 1 69 1 0 344 0 1 611 1 0 248 6 7 175 0 1 290 7 9 17 0 1 240 1 2 499 272 15 264 0 37 161 0 4 99 1 2 43 9 0 559 0 5 253 1 6 135 0 3 7 9 7 235 0 5 221 1 0 207 0 2 440 chain 6827 chr10 135534747 + 63363354 63363427 THE1B 368 + 3 76 178741 73 chain 54463 chr10 135534747 + 63407268 63408209 L1MA3 4352 - 28 935 56058 11 1 0 25 1 0 6 1 0 24 2 0 22 4 0 10 71 74 26 67 37 69 2 1 119 0 1 5 18 16 7 0 2 54 0 1 77 1 0 121 0 1 155 1 2 41 chain 3769 chr10 135534747 + 63428573 63428632 MER96B 391 - 54 110 210828 43 1 0 8 2 0 5 chain 77550 chr10 135534747 + 63451253 63452142 L1PA7 6471 - 1 889 44713 849 1 0 39 chain 2993 chr10 135534747 + 63468177 63468527 MLT1A0 366 - 15 366 225195 17 134 132 31 150 153 18 chain 306068 chr10 135534747 + 63472245 63475780 L1P2 5180 - 7 3537 13168 37 1 0 47 1 0 336 1 0 422 1 0 5 4 0 94 0 1 283 0 1 213 0 1 38 1 0 524 1 0 840 0 1 11 1 0 375 0 2 299 chain 12829 chr10 135534747 + 63484581 63484723 L1PA5 6144 + 5995 6137 148931 142 chain 59593 chr10 135534747 + 63484839 63485527 L1PA5 6144 + 5456 6144 53056 688 chain 4553 chr10 135534747 + 63555944 63556078 MIR 256 + 102 232 200182 44 65 61 25 chain 30558 chr10 135534747 + 63576619 63576937 AluYb8 318 + 0 318 83304 318 chain 23781 chr10 135534747 + 63615921 63616200 AluY 311 + 18 299 111589 114 0 1 144 0 1 21 chain 136325 chr10 135534747 + 63627220 63628884 LTR12C 1709 + 0 1709 26778 428 8 9 169 0 1 146 0 2 42 0 40 274 1 0 6 2 0 75 32 36 212 0 1 186 1 0 82 chain 25026 chr10 135534747 + 63673522 63673809 AluSp 311 - 24 311 104656 287 chain 21053 chr10 135534747 + 63714511 63714778 AluSp 311 + 20 295 123719 19 10 18 238 chain 194696 chr10 135534747 + 63736620 63738788 L1PA5 6144 - 0 2169 19608 258 0 1 59 0 1 539 1 0 1311 chain 16116 chr10 135534747 + 63743627 63743795 AluYb8 318 - 0 168 138003 168 chain 5217 chr10 135534747 + 63744971 63745052 MADE1 96 + 0 96 192849 33 7 23 28 1 0 12 chain 6616 chr10 135534747 + 63745233 63745372 L1MB8 1703 + 1513 1628 180328 71 43 18 20 0 1 5 chain 15876 chr10 135534747 + 63773753 63773975 L1MA8 2339 - 430 648 138718 29 1 2 5 1 0 33 4 0 149 chain 6482 chr10 135534747 + 63874214 63874437 MSTB1 431 - 115 326 181378 30 111 108 5 0 1 12 10 0 55 chain 3766 chr10 135534747 + 63877632 63877672 L1MA5 2750 - 219 259 210862 40 chain 9844 chr10 135534747 + 63880631 63880858 L1MA3 4352 - 0 216 161368 17 6 3 4 1 0 12 1 0 28 1 0 6 1 0 19 6 4 23 4 0 31 33 35 34 chain 15300 chr10 135534747 + 63888450 63888650 L1MB7 1623 + 396 597 140492 103 1 2 96 chain 80492 chr10 135534747 + 63893798 63894785 L1PA7 6471 - 3 972 43395 7 4 0 22 0 1 4 29 15 282 2 0 509 0 1 128 chain 42226 chr10 135534747 + 63902394 63903171 L1PREC2 3366 + 2297 3034 66367 208 0 1 246 2 0 47 144 123 23 47 30 35 2 1 23 chain 26514 chr10 135534747 + 63911932 63912451 L1PREC2 3366 - 332 800 97997 24 6 4 33 39 22 29 3 1 15 9 4 14 45 34 4 1 0 44 1 0 54 2 0 35 1 0 136 12 3 12 chain 36037 chr10 135534747 + 63933487 63933893 L1PA4 6152 + 5736 6141 74853 162 1 0 243 chain 4808 chr10 135534747 + 63942850 63942915 L1PB1 5432 - 24 86 197256 4 1 0 13 1 0 21 1 0 24 chain 133961 chr10 135534747 + 64039952 64041562 LTR12C 1709 + 0 1709 27219 102 7 6 716 4 85 202 1 0 6 2 0 107 0 4 220 0 17 17 0 1 226 chain 11932 chr10 135534747 + 64046774 64047047 MLT1A0-int 1658 - 1296 1630 152474 69 17 75 18 10 9 23 0 3 16 58 59 62 chain 25951 chr10 135534747 + 64060870 64061239 THE1C 375 + 0 375 100203 19 0 1 105 3 0 55 0 1 9 1 0 123 0 9 14 17 16 23 chain 12189 chr10 135534747 + 64075945 64076094 MER2 342 + 145 294 151457 149 chain 184170 chr10 135534747 + 64081695 64084331 L1PREC2 3366 + 430 3051 20574 38 1 0 280 0 1 5 1 0 32 2 3 201 0 1 32 12 11 48 1 0 100 10 11 111 11 18 210 2 9 144 5 8 221 1 0 60 11 20 476 8 9 273 2 0 43 18 17 38 1 0 4 3 0 13 29 21 14 11 6 14 2 0 29 3 1 11 22 8 35 6 4 37 1 0 4 chain 163286 chr10 135534747 + 64100162 64102377 MER41-int 2638 - 2 2251 22910 109 0 1 59 12 15 160 0 1 91 4 5 344 3 1 43 0 1 44 1 0 34 0 3 52 1 0 350 1 0 4 1 0 100 1 2 119 9 12 40 1 2 11 1 0 65 0 5 37 6 7 97 1 15 78 0 2 21 19 20 6 1 0 220 0 4 69 chain 9430 chr10 135534747 + 64104539 64104653 MER41B 635 - 7 121 163413 114 chain 22661 chr10 135534747 + 64110531 64110866 THE1B 368 - 20 368 117269 55 7 6 86 3 1 25 4 3 19 4 6 90 1 16 41 chain 99675 chr10 135534747 + 64110866 64112178 THE1B-int 1605 - 0 1349 36862 28 8 2 164 9 6 18 0 10 150 0 10 141 3 0 5 0 3 524 0 1 92 10 35 160 chain 5064 chr10 135534747 + 64112180 64112241 THE1B 368 - 248 309 194502 61 chain 2941 chr10 135534747 + 64112241 64112287 THE1B 368 - 324 368 226322 28 5 3 13 chain 2591 chr10 135534747 + 64114190 64114260 MLT1F 544 - 124 195 231808 15 31 32 24 chain 88217 chr10 135534747 + 64151009 64152362 L1PB1 5432 - 9 1317 40293 5 1 0 14 1 0 12 1 0 21 2 1 24 2 0 14 1 0 5 2 0 15 25 0 5 1 0 11 1 0 15 1 0 45 1 0 15 2 1 52 2 0 6 25 20 4 1 0 23 3 2 10 1 0 36 59 55 164 4 0 35 7 10 154 8 9 18 0 1 131 7 15 305 1 0 55 chain 11767 chr10 135534747 + 64157809 64157993 L1PB2 3958 + 3659 3838 153185 18 5 4 46 2 1 21 2 0 25 6 5 59 chain 4764 chr10 135534747 + 64167385 64167470 LTR26 622 + 531 617 197765 41 21 22 23 chain 4795 chr10 135534747 + 64171482 64171549 L1PA10 4194 - 44 108 197415 33 4 1 30 chain 10403 chr10 135534747 + 64171734 64171880 L1P3 4156 + 3994 4137 158672 113 2 0 5 2 1 24 chain 27800 chr10 135534747 + 64188023 64188401 THE1C 375 + 0 375 93694 177 24 21 177 chain 63301 chr10 135534747 + 64204536 64205230 L1PA3long 6157 - 0 694 51322 694 chain 22178 chr10 135534747 + 64213089 64213462 L1PB4 2604 - 53 423 119450 108 4 7 11 1 2 46 2 0 25 8 4 56 31 30 81 chain 3508 chr10 135534747 + 64240520 64240683 UCON7 167 + 2 159 215232 13 26 22 22 67 65 35 chain 22758 chr10 135534747 + 64244066 64244425 THE1B 368 - 0 368 116794 126 1 0 12 1 0 11 1 5 14 0 3 28 1 0 86 29 36 34 2 0 13 chain 21898 chr10 135534747 + 64254496 64254767 L1PA8 5853 - 0 266 120629 93 1 0 17 1 0 64 1 0 71 2 0 21 chain 5779 chr10 135534747 + 64262426 64262513 L1MB8 1703 - 303 392 187359 34 7 9 46 chain 29089 chr10 135534747 + 64275615 64275926 AluYb8 318 - 7 318 88597 311 chain 332039 chr10 135534747 + 64280458 64285971 L1PB1 5432 - 28 4872 12127 12 1 0 22 1 0 23 69 54 4 1 0 8 1 0 45 1 0 11 9 8 37 30 24 12 1 0 10 1 0 20 41 20 78 0 2 17 4 3 280 1 0 11 1 0 68 9 6 68 18 1 125 0 1 54 6 5 18 0 1 156 7 8 207 0 1 8 0 8 92 1 2 125 32 26 140 1 0 264 5 0 82 4 5 220 1 0 5 6 7 174 3 0 129 0 2 5 10 8 22 0 3 14 31 25 83 332 0 32 0 8 7 12 0 228 45 49 361 0 1 132 324 1 306 0 1 4 19 15 158 2 0 199 2 1 80 2 1 89 1 0 10 8 10 25 4 9 39 5 3 46 0 1 86 0 63 10 chain 22579 chr10 135534747 + 64291072 64291374 AluY 311 + 0 302 117673 10 2 1 160 11 10 96 1 3 22 chain 25994 chr10 135534747 + 64348253 64348526 AluYa5 310 - 15 288 100041 273 chain 28934 chr10 135534747 + 64352018 64352405 THE1C 375 + 0 375 89304 185 1 0 4 20 9 64 1 0 4 0 1 108 chain 7139 chr10 135534747 + 64358303 64358388 L1PA8 5853 + 5768 5853 176474 85 chain 551497 chr10 135534747 + 64362509 64368514 L1PA2 6032 - 0 6031 1252 77 5 0 134 0 1 648 1 0 2111 0 1 794 0 4 1430 0 4 209 0 4 152 0 19 133 1 0 310 chain 33155 chr10 135534747 + 64389973 64390344 L1PA3long 6157 + 5773 6144 78981 371 chain 18419 chr10 135534747 + 64405877 64406084 L1PA7 6471 + 6261 6468 131716 207 chain 4600 chr10 135534747 + 64421900 64421957 MER51A 677 - 421 478 199637 57 chain 9396 chr10 135534747 + 64430183 64430293 MLT2A1 477 - 367 477 163581 110 chain 530006 chr10 135534747 + 64432299 64438119 L1PA3long 6157 - 322 6151 4187 1702 0 7 181 0 1 1624 0 1 2313 chain 8783 chr10 135534747 + 64438188 64438290 L1HS 6032 - 5930 6032 166751 102 chain 252455 chr10 135534747 + 64461466 64464412 L1PA6 6164 + 3216 6161 16104 90 1 0 392 2 0 958 0 1 221 0 4 509 0 2 760 5 0 8 chain 141336 chr10 135534747 + 64472162 64473717 L1PA3long 6157 + 4600 6157 25931 931 0 1 291 0 1 333 chain 542120 chr10 135534747 + 64541767 64548550 L1PA7 6471 + 0 6461 2483 251 6 8 153 3 0 244 6 7 59 0 1 1625 0 1 73 24 0 209 3 1 68 1 0 131 0 5 527 1 0 252 301 4 216 0 1 149 1 0 22 1 0 395 0 1 5 5 0 225 0 1 37 0 4 65 3 0 879 6 5 837 chain 23930 chr10 135534747 + 64562496 64562787 AluY 311 + 6 293 110750 121 4 0 166 chain 32244 chr10 135534747 + 64585468 64585899 MLT2A1 477 + 0 475 80454 171 3 0 8 0 1 24 0 1 73 0 10 97 4 0 6 11 49 11 0 1 23 chain 10192 chr10 135534747 + 64593411 64593693 L1MC3 1789 + 1076 1386 159668 116 133 162 23 1 0 9 chain 21323 chr10 135534747 + 64609400 64609695 MER1B 344 + 30 329 122785 205 1 0 26 3 0 5 11 19 44 chain 24494 chr10 135534747 + 64631904 64632184 AluYc 301 + 12 285 107574 102 7 0 171 chain 9052 chr10 135534747 + 64634901 64635036 L1MB3 1562 - 1419 1554 165305 22 5 6 95 1 0 12 chain 8609 chr10 135534747 + 64662288 64662405 MER34A 573 + 446 564 167677 32 0 1 46 0 1 27 1 0 11 chain 65237 chr10 135534747 + 64682689 64683777 L1MA3 4352 + 3229 4324 50446 64 0 3 22 1 0 4 0 4 29 17 19 13 1 0 4 11 14 137 0 1 71 7 12 177 0 3 220 107 93 63 3 4 11 2 8 25 4 0 30 2 0 22 8 10 25 1 0 7 chain 107009 chr10 135534747 + 64688026 64689297 SVA_A 1864 - 0 1858 34971 620 3 0 22 0 2 12 2 0 36 3 482 45 0 116 513 5 0 10 chain 17677 chr10 135534747 + 64692672 64692880 L1PA5 6144 - 5 214 133753 138 1 2 69 chain 159092 chr10 135534747 + 64706812 64708849 SVA_E 1901 + 0 1882 23452 145 1 0 179 3 0 152 0 80 65 0 40 151 99 0 5 1 0 110 3 0 328 168 0 627 chain 8230 chr10 135534747 + 64707510 64707607 SVA_E 1901 + 813 983 76496 4 1 0 47 0 74 45 chain 14744 chr10 135534747 + 64708054 64708222 SVA_E 1901 + 953 1128 97385 13 6 13 149 chain 549477 chr10 135534747 + 64709386 64715526 L1PA4 6152 + 1 6152 1522 34 1 8 377 1 2 346 4 0 2938 13 18 216 0 1 2181 0 1 29 chain 15392 chr10 135534747 + 64734707 64734942 THE1B 368 - 103 368 140226 15 19 18 14 0 4 13 0 3 29 1 0 90 0 25 54 chain 25837 chr10 135534747 + 64736870 64737173 AluYk4 311 + 0 301 100720 132 2 0 169 chain 45202 chr10 135534747 + 64782132 64782679 MER41A 554 + 0 552 62821 73 0 1 352 0 3 25 0 1 97 chain 40099 chr10 135534747 + 64783383 64783903 MER41A 554 - 14 541 69186 59 8 13 40 0 1 75 9 10 329 chain 29438 chr10 135534747 + 64784900 64785210 AluYa5 310 - 0 310 86910 310 chain 132261 chr10 135534747 + 64793165 64794714 LTR12C 1709 + 0 1709 27571 708 0 159 245 1 0 4 4 2 100 6 10 23 1 0 220 0 1 237 chain 107565 chr10 135534747 + 64808983 64810385 L1PA8A 6298 - 7 1362 34833 194 5 6 210 0 2 389 3 1 20 1 0 97 44 7 56 0 1 285 11 0 51 1 7 6 6 0 23 chain 51879 chr10 135534747 + 64841964 64842735 L1PB1 5432 + 4548 5311 57695 41 0 1 31 0 1 182 0 3 291 5 4 12 5 0 24 1 0 4 3 2 14 7 3 7 2 0 52 2 1 16 4 3 18 4 11 11 1 0 16 1 0 4 2 0 11 chain 40021 chr10 135534747 + 64860803 64861333 LTR10F 562 + 0 562 69288 100 0 1 96 7 0 21 0 14 9 0 24 77 6 5 58 1 0 111 0 1 20 1 2 23 chain 7479 chr10 135534747 + 64864669 64864758 LTR8 732 - 576 665 174277 89 chain 6444 chr10 135534747 + 64885775 64885852 L1PA6 6164 - 20 97 181682 77 chain 12837 chr10 135534747 + 64886960 64887149 MER30 238 + 0 238 148898 98 11 27 28 1 7 27 0 27 24 chain 57755 chr10 135534747 + 64890441 64891174 LTR17 781 - 53 781 54108 195 2 1 205 1 0 148 1 0 14 10 9 100 1 0 56 chain 25857 chr10 135534747 + 64895404 64895702 AluSc5 308 - 8 307 100620 251 0 1 47 chain 22474 chr10 135534747 + 64898260 64898518 AluY 311 + 38 297 118139 94 0 1 164 chain 12024 chr10 135534747 + 64907375 64907519 L1PA7 6471 - 1 152 152099 11 0 7 133 chain 24961 chr10 135534747 + 64940529 64940790 AluYa5 310 - 12 273 105002 261 chain 23941 chr10 135534747 + 64949969 64950261 AluSg7 307 - 14 307 110680 161 1 2 130 chain 3306 chr10 135534747 + 64965833 64965873 MER2 342 + 283 322 218844 19 1 0 20 chain 2898 chr10 135534747 + 64978494 64978533 L1MC5 759 + 683 719 227059 28 3 0 8 chain 3421 chr10 135534747 + 64989121 64989159 MER66B 489 + 295 333 216757 38 chain 5254 chr10 135534747 + 65007631 65007706 L1MA4 2864 + 317 411 192470 49 1 20 25 chain 5843 chr10 135534747 + 65009115 65009336 L1MA4 2864 + 2655 2834 186742 16 3 0 12 72 44 10 5 0 25 9 7 40 12 8 17 chain 19261 chr10 135534747 + 65038361 65038618 AluSp 311 + 27 300 129343 9 1 0 14 1 19 208 2 1 22 chain 17696 chr10 135534747 + 65061292 65061577 L1PA8 5853 + 5566 5853 133713 43 3 1 69 1 0 14 5 7 39 9 6 15 1 12 24 4 0 51 1 0 6 chain 25295 chr10 135534747 + 65108586 65108886 AluSx1 309 + 8 308 103249 300 chain 16090 chr10 135534747 + 65256944 65257223 L1MB8 1703 + 1264 1577 138086 24 11 13 78 16 26 18 7 10 28 10 29 87 chain 5141 chr10 135534747 + 65271096 65271188 MER8 282 + 0 136 193648 52 19 63 21 chain 26195 chr10 135534747 + 65272940 65273307 L1PA16 3655 + 2465 2830 99223 107 0 1 98 24 21 138 chain 23492 chr10 135534747 + 65305147 65305432 AluSc 308 - 21 308 113162 10 1 3 274 chain 25196 chr10 135534747 + 65313576 65313876 AluY 311 + 0 297 103757 24 4 0 108 0 1 164 chain 29134 chr10 135534747 + 65316389 65316694 AluYa5 310 - 5 310 88390 305 chain 8492 chr10 135534747 + 65332097 65332304 L1PA8 5853 - 55 223 168336 10 38 0 13 0 3 11 6 5 15 2 1 44 23 21 45 chain 13824 chr10 135534747 + 65370127 65370337 L1PA8 5853 + 5647 5853 145164 23 10 9 14 1 0 46 3 2 19 1 0 93 chain 22779 chr10 135534747 + 65395879 65396143 AluY 311 + 29 294 116680 252 0 1 12 chain 25583 chr10 135534747 + 65407128 65407626 L1PB1 5432 - 5 467 101811 5 2 0 18 15 13 21 3 2 22 2 0 15 7 4 27 10 0 4 3 0 13 9 8 36 2 1 17 2 1 52 2 0 9 2 0 3 2 0 9 1 0 13 1 0 17 16 14 138 chain 22647 chr10 135534747 + 65414336 65414672 THE1C 375 + 0 336 117349 62 19 5 10 18 32 4 0 1 47 1 0 175 chain 57843 chr10 135534747 + 65424404 65425158 LTR17 781 - 13 781 54067 27 1 23 16 5 0 289 14 17 5 3 0 52 6 4 8 1 0 327 chain 33160 chr10 135534747 + 65440147 65440542 L1PA7 6471 - 1 401 78967 136 0 6 18 1 0 240 chain 125623 chr10 135534747 + 65452826 65454372 THE1B-int 1605 + 30 1605 29209 137 0 1 44 5 6 212 1 26 561 1 3 585 chain 4135 chr10 135534747 + 65483883 65483931 L1M2a1 1281 + 1018 1066 205431 48 chain 24657 chr10 135534747 + 65494760 65495040 AluSp 311 - 20 300 106688 280 chain 4738 chr10 135534747 + 65497581 65497657 L1MA7 2200 + 1837 1912 198041 41 8 7 27 chain 24112 chr10 135534747 + 65506031 65506327 AluSg7 307 + 3 297 109686 128 0 1 87 1 0 71 2 0 7 chain 112026 chr10 135534747 + 65507395 65508663 L1PA4 6152 + 4872 6146 33655 313 0 1 118 0 4 217 0 1 620 chain 54531 chr10 135534747 + 65525851 65526591 MER4E 760 + 0 760 56013 24 1 0 127 0 9 12 6 0 195 3 5 7 0 4 39 1 3 4 1 0 17 1 0 4 1 6 20 7 13 194 1 2 75 chain 29047 chr10 135534747 + 65537813 65538184 L1PA5 6144 - 0 368 88772 11 3 1 66 1 0 70 4 5 186 1 0 29 chain 29196 chr10 135534747 + 65540398 65540771 THE1C 375 + 1 375 88067 185 7 8 181 chain 6394 chr10 135534747 + 65543347 65543530 MER53 195 + 6 195 182072 53 45 49 21 41 43 23 chain 28439 chr10 135534747 + 65545276 65545582 AluYg6 310 + 0 306 91427 306 chain 73372 chr10 135534747 + 65546445 65547325 L1PA7 6471 - 8 899 46850 6 0 5 130 0 2 13 3 0 31 4 0 139 1 2 437 0 11 66 2 1 48 chain 127500 chr10 135534747 + 65548513 65549943 L1PA5 6144 + 4716 6144 28689 44 0 1 533 1 0 487 3 1 362 chain 7152 chr10 135534747 + 65557031 65557182 Tigger3b 1229 + 960 1079 176395 26 16 0 22 0 15 46 31 0 10 chain 174748 chr10 135534747 + 65565850 65568433 L1MA2 4263 - 158 2848 21502 41 13 6 92 1 0 9 2 1 102 13 14 34 17 14 19 0 5 54 15 16 4 1 0 27 9 8 72 10 14 204 6 7 378 1 3 41 2 1 27 0 2 208 5 0 54 4 3 4 0 1 86 0 4 195 0 1 177 1 0 9 0 2 5 10 9 170 15 14 16 28 160 91 30 0 162 3 5 75 1 3 4 0 1 36 chain 190987 chr10 135534747 + 65569906 65574673 L1PREC2 3366 - 303 3227 19957 4 1 0 11 2 0 38 6 4 35 155 125 39 2 1 31 6 7 16 7 5 187 0 1 69 1790 0 145 1 0 24 42 43 91 0 1 330 0 1 295 5 6 135 1 5 95 9 8 15 9 4 7 0 1 86 1 0 280 14 0 7 1 15 75 2 0 159 21 19 172 2 1 64 3 0 82 6 5 16 0 1 16 1 0 21 0 1 4 2 0 5 1 0 10 1 0 13 1 0 23 2 1 8 5 0 20 2 0 6 1 4 31 chain 139793 chr10 135534747 + 65570537 65572260 SVA_D 2077 - 0 2077 26172 323 0 3 22 1 0 158 0 352 130 0 3 48 0 2 17 1 18 46 3 39 8 2 0 30 8 7 56 0 1 4 0 1 30 78 5 4 0 1 730 0 17 12 1 0 6 1 0 4 chain 44292 chr10 135534747 + 65607189 65607700 MER9a2 513 + 0 513 63832 454 0 2 57 chain 201066 chr10 135534747 + 65609022 65611425 HERVK9-int 4720 + 36 3353 19136 13 8 5 4 1 0 66 1 0 8 1 0 30 1 0 1334 0 924 632 0 4 244 40 33 20 chain 535883 chr10 135534747 + 65611461 65617591 L1PA5 6144 - 9 6143 3463 324 0 1 125 5 6 213 0 1 1234 2 1 721 1 0 1555 0 1 182 0 1 428 0 1 81 0 1 127 2 0 123 1 0 285 0 1 262 0 1 459 chain 27107 chr10 135534747 + 65633184 65633525 THE1A 353 - 2 353 95916 222 0 11 7 7 6 105 chain 2448 chr10 135534747 + 65634264 65634428 L1MB7 1623 + 1400 1534 233712 22 1 0 7 118 89 16 chain 16604 chr10 135534747 + 65666200 65666407 AluSp 311 - 105 311 136654 32 1 0 174 chain 24013 chr10 135534747 + 65675317 65675692 THE1D 372 + 0 372 110256 54 26 27 18 6 4 72 1 0 12 5 6 84 1 0 63 1 0 32 chain 4100 chr10 135534747 + 65687751 65687801 MER4E1 777 - 26 77 205949 29 0 1 21 chain 52577 chr10 135534747 + 65701243 65701901 PABL_A 660 - 0 660 57250 319 3 2 88 0 2 83 0 11 131 10 0 24 chain 539848 chr10 135534747 + 65704403 65710532 L1PA4 6152 - 0 6131 2836 6 0 5 329 2 0 588 0 1 4 1 0 1245 5 0 35 0 1 659 4 0 16 0 5 81 2 0 604 0 4 2548 chain 6782 chr10 135534747 + 65711830 65711912 MLT2B3 573 - 121 203 179091 82 chain 8248 chr10 135534747 + 65715782 65715982 Ricksha_0 1343 + 0 213 169699 38 86 99 76 chain 178727 chr10 135534747 + 65720678 65722651 L1PA4 6152 + 4173 6146 21105 7 4 0 1124 0 4 838 chain 27489 chr10 135534747 + 65740597 65740946 THE1A 353 + 4 353 94688 77 8 9 21 1 0 242 chain 128443 chr10 135534747 + 65740946 65743842 THE1A-int 1579 + 0 1574 28467 281 0 2 208 1329 0 72 0 1 276 0 2 41 0 3 676 1 0 12 chain 110842 chr10 135534747 + 65741458 65742764 L1PA7 6471 - 4 1340 33990 158 10 12 71 0 26 500 0 2 567 chain 9684 chr10 135534747 + 65743847 65744157 THE1A 353 + 0 310 95463 109 2 1 117 1 2 81 chain 44591 chr10 135534747 + 65744163 65744676 MER9a1 513 - 0 513 63491 513 chain 1343 chr10 135534747 + 65744676 65744719 THE1A 353 + 310 353 95463 43 chain 202587 chr10 135534747 + 65759424 65762282 L1PA13 3608 + 91 2922 19019 18 6 4 19 9 6 22 73 58 71 2 0 127 18 16 13 2 0 17 6 2 17 1 0 10 0 1 8 3 1 17 2 0 16 1 0 97 2 0 190 0 1 898 0 1 141 1 2 69 0 1 7 4 1 49 3 5 252 10 8 27 10 13 42 0 1 75 0 1 125 4 5 79 0 3 295 chain 544195 chr10 135534747 + 65775102 65781307 L1PA4 6152 - 1 6152 2188 797 0 1 47 38 0 276 0 1 1137 0 2 1065 1 2 621 0 2 1271 1 2 85 17 0 266 1 0 76 3 0 272 2 0 124 2 1 103 chain 22256 chr10 135534747 + 65785661 65785921 AluSg 306 + 38 295 119094 250 3 0 7 chain 5468 chr10 135534747 + 65804505 65804565 HERV17-int 4347 - 169 229 188571 60 chain 15273 chr10 135534747 + 65804565 65804736 HERV17-int 4347 + 4176 4347 140562 171 chain 28212 chr10 135534747 + 65805050 65805376 LTR17 781 + 0 326 92263 326 chain 121669 chr10 135534747 + 65811283 65812875 THE1C-int 1605 - 0 1605 30491 9 0 1 305 0 8 179 8 9 342 6 0 17 6 6 210 1 2 65 5 12 103 0 2 320 3 2 13 chain 84590 chr10 135534747 + 65825474 65826429 LTR13A 966 - 0 952 41683 195 3 0 757 chain 541992 chr10 135534747 + 65880048 65886073 L1PA3long 6157 + 4 6156 2506 148 0 1 164 1 0 460 1 129 1791 1 0 3459 chain 12231 chr10 135534747 + 65911599 65911749 Tigger1 2417 - 16 166 151297 150 chain 43306 chr10 135534747 + 65953601 65954088 L1PA7 6471 + 5976 6463 65037 487 chain 8118 chr10 135534747 + 65956309 65956449 LTR12C 1709 - 641 940 170391 42 30 189 68 chain 41266 chr10 135534747 + 65964099 65964627 LTR10F 562 - 0 532 67576 189 7 8 134 1 4 197 chain 24065 chr10 135534747 + 65964633 65964940 L1PA4 6152 + 5858 6143 109958 116 18 0 135 4 0 34 chain 325843 chr10 135534747 + 65986060 65990147 L1PA7 6471 - 14 6456 12353 797 8 7 29 0 3 12 0 1 372 0 2284 117 4 15 174 5 6 236 1 2 238 0 4 125 0 1 156 4 5 523 0 1 4 1 0 40 0 40 263 0 1 112 1 2 407 0 1 65 9 2 78 1 2 164 10 22 131 chain 87273 chr10 135534747 + 66000395 66001438 MER11A 1151 + 0 1146 40660 294 1 0 32 0 2 100 0 1 162 0 101 113 2 1 56 3 0 211 0 4 69 chain 104529 chr10 135534747 + 66008328 66009837 THE1B-int 1605 - 13 1592 35615 34 1 0 64 0 1 164 1 0 30 3 0 81 37 18 406 12 44 39 29 23 218 18 84 28 13 8 71 19 25 241 chain 13636 chr10 135534747 + 66017981 66018146 L1PA4 6152 + 5946 6139 145835 20 3 31 142 chain 7014 chr10 135534747 + 66064890 66064978 MLT1A1 405 - 0 87 177369 73 1 0 14 chain 2709 chr10 135534747 + 66098277 66098367 MER21A 919 - 800 904 230134 9 13 0 10 20 46 10 1 2 27 chain 20542 chr10 135534747 + 66195419 66195683 AluY 311 + 39 304 125498 86 2 1 5 0 2 171 chain 525047 chr10 135534747 + 66196293 66202281 L1PA4 6152 - 183 6152 4684 926 0 13 516 8 0 3 13 0 522 1 0 657 8 0 298 0 1 1460 0 3 367 3 0 6 8 11 155 0 1 450 1 0 120 6 0 460 chain 37855 chr10 135534747 + 66213359 66213852 MER9a3 513 + 0 513 72338 18 0 2 157 0 1 80 0 17 23 1 0 136 0 1 10 2 0 8 1 3 57 chain 395035 chr10 135534747 + 66228687 66234296 L1PB1 5432 + 71 5420 10279 60 0 2 390 1 2 80 7 8 44 0 1 99 11 12 161 0 11 137 0 1 96 1 2 231 0 3 37 1 10 224 0 4 18 2 0 239 311 0 29 6 0 527 0 4 78 1 6 232 0 1 15 2 0 56 0 3 103 0 1 66 0 5 198 0 6 454 8 0 98 0 4 133 0 1 371 0 14 115 31 36 75 6 8 46 6 7 4 0 1 51 0 1 72 0 14 133 5 2 190 1 2 10 3 0 25 8 6 12 4 0 9 2 0 28 1 3 22 2 1 16 1 0 38 6 5 16 3 0 6 22 12 13 8 5 14 2 0 45 1 0 13 1 0 16 chain 19588 chr10 135534747 + 66237092 66237462 THE1D 372 - 0 372 128411 93 4 0 33 71 72 16 1 2 24 12 16 116 chain 20726 chr10 135534747 + 66248631 66248907 AluSc 308 + 0 273 124872 48 4 9 118 8 0 98 chain 6907 chr10 135534747 + 66248996 66249096 MSTA 426 - 326 426 178135 32 12 12 56 chain 11693 chr10 135534747 + 66253502 66256361 L1MA4 2864 - 248 2092 153511 8 14 0 109 4 3 10 2587 1587 127 chain 24789 chr10 135534747 + 66266576 66266960 LTR7 482 + 0 473 105946 101 0 50 60 8 50 24 13 11 10 2 0 113 13 14 40 chain 28611 chr10 135534747 + 66268795 66269092 AluYa5 310 - 13 310 90692 297 chain 46848 chr10 135534747 + 66270815 66271348 L1PA7 6471 + 5932 6466 61345 204 0 1 329 chain 23102 chr10 135534747 + 66274380 66274668 AluSc 308 - 6 294 115131 58 0 3 5 3 0 222 chain 12216 chr10 135534747 + 66274992 66275254 MER2 342 + 13 295 151355 14 50 63 16 6 5 31 15 23 59 2 0 5 0 2 64 chain 445959 chr10 135534747 + 66320909 66327057 L1PA8 5853 - 0 5803 8874 82 12 11 19 2 1 39 25 23 12 0 4 54 2 0 46 4 3 89 0 4 318 0 5 134 0 2 8 1 0 100 9 8 82 11 0 513 0 1 148 1 4 115 0 3 153 1 2 545 326 20 91 2 1 330 0 1 316 11 0 283 0 3 115 0 1 174 5 6 90 1 2 58 0 1 180 0 1 742 1 0 239 0 1 4 0 1 6 1 0 10 1 0 49 5 9 39 12 13 231 12 3 153 3 8 36 49 13 13 1 0 10 2 0 22 chain 91380 chr10 135534747 + 66337976 66339040 L1PA5 6144 + 5081 6142 39169 4 1 0 631 3 0 94 0 1 331 chain 100418 chr10 135534747 + 66342949 66344234 L1PA10 4194 - 33 1315 36649 11 1 0 34 3 0 23 1 0 13 1 0 4 0 1 629 0 2 184 4 5 81 10 9 286 chain 80787 chr10 135534747 + 66344234 66345334 L1PA10 4194 + 1703 2804 43275 142 0 1 97 10 4 123 8 18 105 0 2 429 1 2 31 8 0 72 3 4 71 chain 6841 chr10 135534747 + 66365060 66365159 L1MB5 1630 + 1330 1438 178648 50 4 13 45 chain 5493 chr10 135534747 + 66396817 66396886 AluJr4 308 - 46 115 190115 69 chain 40433 chr10 135534747 + 66419980 66420414 L1PA2 6032 + 5595 6029 68687 434 chain 86452 chr10 135534747 + 66435727 66439086 L1PB2 3958 - 161 2948 40988 16 8 7 21 2 0 9 18 17 42 14 13 43 0 1 11 1 0 68 6 4 93 4 0 13 2 0 57 10 5 16 1 0 10 9 21 14 9 7 168 3 4 79 15 16 118 1 0 92 14 15 172 0 1 152 1962 1396 86 chain 15744 chr10 135534747 + 66443615 66443872 Tigger3a 397 - 74 383 139131 184 54 106 19 chain 6885 chr10 135534747 + 66461504 66461793 L1PA11 4918 + 4275 4578 178317 56 102 136 7 2 0 14 1 0 11 1 0 8 22 13 10 15 11 13 1 0 13 2 0 11 chain 86550 chr10 135534747 + 66486558 66487617 MER11C 1089 + 0 1073 40951 246 0 9 51 0 2 5 2 4 359 1 0 61 0 1 148 0 1 186 chain 5597 chr10 135534747 + 66505584 66505663 LTR43B 570 - 277 358 189118 33 3 5 43 chain 37976 chr10 135534747 + 66518918 66519362 L1PA7 6471 - 352 797 72165 416 2 3 26 chain 28638 chr10 135534747 + 66519362 66519717 L1PA7 6471 + 6112 6469 90566 24 0 1 171 14 15 146 chain 360166 chr10 135534747 + 66539652 66544074 HERV9-int 5642 - 1277 5637 11359 86 23 22 432 0 13 642 0 1 502 6 5 161 2 0 5 2 4 36 16 15 527 0 1 802 8 10 20 80 0 193 0 1 96 1 0 75 0 4 707 chain 66982 chr10 135534747 + 66544100 66545104 LTR12 884 - 0 884 49661 233 21 18 5 0 3 48 102 0 200 2 0 9 24 7 109 5 6 246 chain 510907 chr10 135534747 + 66564095 66570652 L1PA7 6471 - 5 6471 6078 184 3 14 335 0 7 300 1 3 12 0 1 131 3 8 392 12 0 130 9 7 229 115 1 446 1 0 15 0 1 182 14 2 6 0 1 227 4 0 6 10 14 315 2 1 270 3 2 4 0 1 119 0 4 447 9 10 294 1 2 50 0 1 485 0 1 130 8 9 286 0 2 5 1 0 19 7 6 64 1 0 158 8 23 698 1 0 251 6 7 148 chain 147790 chr10 135534747 + 66595136 66596756 L1PA3long 6157 - 0 1620 24906 1620 chain 190986 chr10 135534747 + 66596756 66598839 L1PA3long 6157 + 2408 4492 19958 1538 0 1 545 chain 3831 chr10 135534747 + 66633721 66633823 LTR47A 437 - 59 175 209918 37 46 60 19 chain 49940 chr10 135534747 + 66665729 66666363 PABL_B 668 - 13 668 59062 51 1 2 167 1 4 14 0 1 44 0 1 48 0 1 41 1 0 115 0 11 90 0 4 61 chain 28429 chr10 135534747 + 66672248 66672550 AluYa5 310 - 8 310 91471 302 chain 539071 chr10 135534747 + 66684054 66690016 L1PA3long 6157 + 53 6157 2975 99 0 1 109 0 9 497 8 136 31 0 4 5218 chain 217176 chr10 135534747 + 66707663 66710776 L1PB1 5432 - 27 3046 18044 14 1 0 18 1 0 27 2 0 14 8 5 14 8 0 17 3 0 11 5 4 60 2 1 51 2 0 11 4 0 9 1 0 15 1 0 20 1 0 5 11 10 284 4 12 175 3 0 630 1 2 28 4 6 138 4 8 89 1 0 107 0 1 88 4 10 172 10 22 63 4 2 254 61 5 36 25 0 125 1 0 51 19 13 283 4 0 60 1 0 4 5 6 39 chain 36953 chr10 135534747 + 66725891 66726380 MER9a3 513 + 14 508 73580 86 10 11 147 19 0 16 3 21 139 0 1 17 0 4 52 chain 27425 chr10 135534747 + 66729375 66729705 L1PA7 6471 + 6139 6468 94894 182 1 0 147 chain 1806 chr10 135534747 + 66738647 66738743 L1PB1 5432 - 8 98 159719 4 1 0 12 3 0 5 0 2 10 1 0 21 1 0 24 2 0 12 chain 24110 chr10 135534747 + 66738759 66739061 AluYk4 311 - 16 311 109695 177 18 10 11 1 2 95 chain 1411 chr10 135534747 + 66739113 66739188 L1PB1 5432 - 138 211 159719 14 1 0 44 1 0 15 chain 39686 chr10 135534747 + 66744511 66745125 LTR12F 595 - 9 595 69774 256 2 1 114 0 82 29 111 3 25 1 0 76 chain 10042 chr10 135534747 + 66763565 66763676 L1PA2 6032 + 5921 6032 160366 111 chain 18818 chr10 135534747 + 66799378 66799717 THE1C 375 + 0 346 130621 106 7 8 59 1 0 12 0 2 17 53 56 34 7 9 43 chain 10207 chr10 135534747 + 66801491 66801613 L1PA7 6471 - 3 125 159586 122 chain 14132 chr10 135534747 + 66801613 66801786 L1PA7 6471 + 6189 6356 144099 124 1 0 4 5 0 39 chain 105091 chr10 135534747 + 66811476 66812689 SVA_C 1631 + 0 1629 35478 21 0 20 142 2 0 25 4 0 288 0 270 81 5 93 56 0 42 299 0 2 290 chain 17055 chr10 135534747 + 66837868 66838059 L1PA4 6152 - 0 191 135446 191 chain 59535 chr10 135534747 + 66851603 66852607 L1PA4 6152 + 5470 6151 53086 305 324 0 42 0 1 333 chain 28719 chr10 135534747 + 66851919 66852231 AluYa5 310 + 0 310 90250 97 1 0 26 1 0 187 chain 449491 chr10 135534747 + 66860403 66865649 L1PA5 6144 + 0 6144 8780 249 5 6 520 0 3 219 0 874 322 0 4 163 1 0 816 1 0 109 2 0 462 6 9 5 3 0 827 0 1 154 8 17 80 0 8 815 0 3 365 1 0 113 chain 70346 chr10 135534747 + 66865738 66867254 MER11C 1089 - 37 1089 48243 249 3 58 20 24 0 126 8 9 150 25 26 4 1 0 70 8 28 45 0 3 76 519 0 188 chain 41495 chr10 135534747 + 66866553 66867066 MER9a1 513 + 0 513 67286 59 0 1 188 4 3 262 chain 76575 chr10 135534747 + 66868238 66869551 HERVK11-int 2540 - 305 1555 45176 124 17 12 69 14 13 182 2 1 103 17 12 191 0 1 91 0 5 53 5 9 80 21 1 25 21 10 15 11 10 15 12 4 21 3 0 8 18 18 23 28 27 47 7 6 15 59 43 16 chain 24687 chr10 135534747 + 66927346 66927705 THE1B 368 - 0 368 106513 75 1 0 74 1 0 10 14 10 18 10 9 112 0 16 44 chain 33393 chr10 135534747 + 66927705 66928232 L1PREC2 3366 - 763 1293 78580 108 0 1 54 11 10 82 3 0 5 0 3 184 65 68 15 chain 205696 chr10 135534747 + 66946274 66948794 L1PA7 6471 - 1 2539 18808 505 0 1 251 3 4 92 8 15 239 1 0 57 0 1 22 1 0 5 6 7 71 0 1 263 0 1 229 0 7 767 chain 44380 chr10 135534747 + 67004945 67005455 MER9a2 513 - 0 513 63716 66 0 2 50 0 1 394 chain 24025 chr10 135534747 + 67021458 67021812 THE1A 353 - 0 353 110188 155 8 7 71 12 11 93 1 2 14 chain 123807 chr10 135534747 + 67021812 67023391 THE1A-int 1579 - 0 1579 29769 50 1 0 403 0 1 52 0 1 255 0 1 260 0 4 14 5 1 41 22 23 302 1 0 110 6 4 57 chain 30799 chr10 135534747 + 67033324 67033695 MLT2A1 477 + 0 384 82866 61 0 9 72 0 1 25 1 5 150 1 0 61 chain 25996 chr10 135534747 + 67045136 67045483 THE1A 353 - 2 353 100035 24 0 5 124 8 7 81 1 0 85 0 1 24 chain 111769 chr10 135534747 + 67045483 67046960 THE1A-int 1579 - 0 1579 33733 236 0 27 151 11 12 302 29 29 242 5 77 324 10 10 132 0 2 35 chain 27118 chr10 135534747 + 67046960 67047315 THE1A 353 - 0 353 95875 155 6 5 83 5 3 82 0 1 24 chain 15531 chr10 135534747 + 67082700 67083048 THE1B 368 + 0 356 139798 111 0 3 6 17 15 28 1 0 4 1 0 4 61 69 46 5 7 13 23 22 28 chain 4410 chr10 135534747 + 67084155 67084206 MADE1 96 + 45 96 201802 51 chain 56976 chr10 135534747 + 67086495 67087258 MER4E 760 + 1 737 54545 16 0 1 104 9 11 228 4 0 118 0 4 45 3 0 5 28 1 203 chain 13429 chr10 135534747 + 67112063 67113982 MER4B 649 + 216 629 146576 70 25 24 21 1 0 30 1642 138 61 27 27 42 chain 14059 chr10 135534747 + 67116900 67117080 MER107 203 + 2 176 144353 160 7 0 8 0 1 5 chain 163340 chr10 135534747 + 67144607 67146502 L1PA5 6144 - 6 1906 22901 137 0 6 7 15 7 95 0 1 79 0 1 510 0 5 1052 chain 200845 chr10 135534747 + 67150123 67152346 L1PA3long 6157 + 3933 6156 19155 2223 chain 80585 chr10 135534747 + 67168987 67169954 LTR5_Hs 974 - 0 974 43350 103 8 6 31 8 15 512 0 1 20 0 1 285 chain 73179 chr10 135534747 + 67173873 67174840 MER11C 1089 - 16 1089 46933 165 0 1 123 6 14 171 44 45 188 0 5 215 0 91 55 chain 53209 chr10 135534747 + 67179752 67180501 MER4E 760 + 2 760 56888 17 3 0 130 45 48 64 0 2 102 0 16 67 1 0 79 15 8 79 1 0 146 chain 120942 chr10 135534747 + 67188249 67189739 LTR12C 1709 - 0 1709 30710 151 1 0 43 1 5 9 0 102 108 1 2 61 0 4 106 3 1 5 1 0 198 5 7 42 0 118 460 10 1 23 0 1 262 chain 14044 chr10 135534747 + 67202056 67202365 L1PA13 3608 + 3258 3548 144406 15 2 0 60 2 1 13 1 0 15 2 1 28 8 5 47 11 7 17 1 0 21 12 16 14 1 0 6 7 1 9 1 0 4 2 0 10 chain 40743 chr10 135534747 + 67216167 67216629 L1PA4 6152 + 5681 6143 68251 462 chain 476307 chr10 135534747 + 67218068 67223871 L1PA6 6164 - 2 5721 7849 8 2 0 1744 0 1 288 0 1 43 1 0 384 3 5 131 7 8 357 0 2 16 7 5 369 0 2 231 119 0 89 0 1 143 2 0 146 0 2 232 1 0 150 4 6 277 0 4 328 7 10 38 0 6 331 6 23 271 11 10 57 chain 8922 chr10 135534747 + 67221659 67221774 L1PA6 6164 - 2048 2164 164787 50 1 2 64 chain 28522 chr10 135534747 + 67224110 67224671 L1PB1 5432 + 4933 5424 91090 170 78 39 4 1 0 12 15 9 69 1 0 45 1 0 15 3 0 6 16 6 14 15 12 12 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 27672 chr10 135534747 + 67224912 67225214 AluYf4 310 + 0 302 94141 302 chain 23882 chr10 135534747 + 67228643 67228954 AluY 311 + 20 311 111008 107 20 0 184 chain 9706 chr10 135534747 + 67248682 67248814 L1PB3 3668 + 3003 3137 162053 79 2 4 51 chain 18965 chr10 135534747 + 67260294 67260516 L1PA3long 6157 + 5925 6149 130193 29 0 2 193 chain 444977 chr10 135534747 + 67263765 67269376 HERVL-int 5654 - 0 5653 8904 98 15 0 8 1 16 268 0 1 37 4 1 42 4 0 83 12 11 184 0 3 431 3 1 96 3 7 47 0 8 738 1 2 57 0 1 666 0 1 8 1 0 32 20 10 107 1 0 265 7 20 164 0 1 278 0 2 53 0 2 530 1 0 228 0 1 107 0 2 103 0 15 270 1 0 19 0 1 65 0 1 153 0 2 66 0 3 16 0 1 57 8 10 244 0 1 9 chain 34191 chr10 135534747 + 67284013 67284401 L1PA4 6152 + 5764 6152 77361 388 chain 317435 chr10 135534747 + 67284464 67288131 L1PA4 6152 + 2481 6152 12706 728 2 0 72 0 2 9 1 0 661 0 1 641 0 1 117 0 1 760 0 1 180 0 1 496 chain 5893 chr10 135534747 + 67311455 67311551 MSTB1 431 + 334 431 186245 67 14 15 15 chain 3360 chr10 135534747 + 67315124 67315161 MER76 683 + 93 130 217878 37 chain 8267 chr10 135534747 + 67320982 67321153 MER4B 649 + 81 304 169579 27 61 113 83 chain 102953 chr10 135534747 + 67331194 67332870 MER61-int 3695 + 296 1671 36006 113 0 5 198 1 3 23 1 0 6 1 0 21 0 7 54 1 2 505 0 1 13 0 1 173 329 4 71 0 4 119 1 6 46 chain 82547 chr10 135534747 + 67342269 67343304 MER11A 1151 + 0 1143 42520 110 0 89 93 11 7 27 0 2 477 6 5 24 5 28 223 1 0 58 chain 517541 chr10 135534747 + 67346869 67352999 L1PA5 6144 - 2 6144 5419 225 4 5 618 1 0 430 1 0 157 0 1 353 0 4 118 0 1 320 2 0 90 0 1 137 0 1 402 8 6 26 0 4 85 0 1 12 0 2 255 1 8 684 0 2 20 0 2 739 1 0 264 15 6 101 0 1 1061 chain 112857 chr10 135534747 + 67376604 67377856 L1PA3long 6157 - 0 1252 33413 185 1 0 4 0 2 402 1 0 659 chain 8269 chr10 135534747 + 67394747 67394838 L1PA4 6152 - 268 359 169571 91 chain 14684 chr10 135534747 + 67394838 67395002 L1PA4 6152 + 5971 6135 142310 164 chain 8627 chr10 135534747 + 67397379 67397526 L1MA6 2487 + 1999 2145 167602 4 1 0 48 1 3 6 2 0 6 3 0 31 5 8 40 chain 29650 chr10 135534747 + 67415474 67415818 L1PA4 6152 + 5798 6143 86061 203 2 3 139 chain 62569 chr10 135534747 + 67417273 67418216 MER11A 1151 + 125 1149 51641 20 0 88 56 14 11 26 35 0 62 0 1 51 6 7 102 21 10 123 19 23 28 0 1 9 0 4 115 3 0 5 0 35 69 1 2 25 1 0 84 5 0 2 0 4 61 chain 21750 chr10 135534747 + 67430388 67430713 THE1B 368 + 0 368 121209 44 13 59 58 21 19 114 1 0 74 chain 24526 chr10 135534747 + 67519209 67519559 THE1A 353 - 5 353 107407 150 1 0 104 5 4 35 7 8 27 0 1 4 2 0 15 chain 18605 chr10 135534747 + 67521136 67521365 THE1A 353 - 0 228 131208 155 1 0 73 chain 4340 chr10 135534747 + 67533314 67533364 HSMAR2 1300 + 1250 1300 202717 50 chain 46815 chr10 135534747 + 67551957 67552550 LTR10C 591 - 0 590 61359 80 6 5 471 3 1 33 chain 82604 chr10 135534747 + 67570989 67572334 LTR12E 1234 - 0 1201 42501 44 133 0 40 31 55 157 1 2 40 0 2 145 51 14 45 41 0 127 4 3 43 3 0 56 1 3 76 10 53 52 1 0 244 chain 191811 chr10 135534747 + 67608542 67611256 L1PB1 5432 + 2778 5422 19882 64 1 0 165 6 8 62 0 4 161 9 7 107 0 1 379 9 1 289 1 0 45 6 7 438 0 5 44 8 6 43 10 7 177 2 0 77 0 1 60 1 0 167 1 2 11 42 1 21 0 3 5 5 0 10 17 16 47 7 6 12 6 5 36 6 5 13 22 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 4221 chr10 135534747 + 67646261 67646306 MER4A1 472 + 417 462 204291 45 chain 29094 chr10 135534747 + 67663939 67664357 LTR7B 505 - 11 505 88576 40 14 13 54 0 1 24 1 0 27 9 1 54 0 2 26 6 68 59 0 21 104 chain 17655 chr10 135534747 + 67682546 67682899 THE1D 372 - 27 372 133827 5 1 0 55 13 10 41 52 56 6 0 6 14 0 1 12 0 4 60 20 0 12 1 2 61 chain 34336 chr10 135534747 + 67688643 67689045 L1PA4 6152 - 9 411 77153 12 1 0 136 0 1 253 chain 16487 chr10 135534747 + 67702071 67702270 AluSc 308 + 67 264 136964 93 2 0 104 chain 527706 chr10 135534747 + 67713145 67719278 L1PA5 6144 - 0 6144 4430 1390 0 1 124 2 1 1511 0 1 758 1 0 545 0 4 97 0 2 540 9 0 1004 21 35 131 chain 39503 chr10 135534747 + 67722317 67722774 L1PA7 6471 - 2 459 70018 457 chain 52275 chr10 135534747 + 67787905 67788502 L1PA4 6152 + 5542 6141 57442 90 1 0 90 0 2 314 0 1 102 chain 10502 chr10 135534747 + 67808539 67808734 L1PA14 3548 + 3252 3436 158239 42 2 1 36 1 0 9 7 3 36 4 2 12 1 0 5 1 0 15 2 1 22 chain 22984 chr10 135534747 + 67865711 67865988 AluSp 311 + 27 305 115696 42 6 7 229 chain 8107 chr10 135534747 + 67869531 67869623 L1PA4 6152 + 6045 6137 170449 92 chain 15475 chr10 135534747 + 67870580 67870764 Tigger3c 601 - 74 258 139978 184 chain 121716 chr10 135534747 + 67882753 67884326 THE1B-int 1605 - 0 1605 30476 9 1 2 17 0 1 67 1 2 365 0 4 185 0 1 182 3 4 306 8 33 115 2 0 312 chain 396192 chr10 135534747 + 67916836 67922367 L1PB1 5432 - 23 5372 10232 18 1 0 21 1 0 24 67 50 16 1 0 36 8 7 15 3 2 52 2 0 10 16 11 9 1 0 21 146 17 47 13 13 225 4 11 178 2 0 287 5 16 155 0 4 268 0 1 167 9 0 265 0 1 307 0 2 134 20 0 163 19 17 339 2 0 194 7 5 45 0 8 3 8 0 283 0 1 110 0 1 295 25 29 53 1 0 49 37 24 787 0 3 8 5 1 195 2 0 149 1 0 197 chain 78487 chr10 135534747 + 67928838 67929989 L1PB1 5432 - 40 1165 44277 22 1 0 24 25 20 27 13 0 18 1 0 45 26 24 44 2 0 8 4 0 14 1 0 8 1 0 24 3 0 5 0 7 62 13 11 66 3 4 14 1 0 67 0 1 156 7 8 87 3 0 26 2 4 250 0 1 78 chain 3762 chr10 135534747 + 67964986 67965122 MER6B 211 + 30 181 210924 36 78 93 22 chain 2717 chr10 135534747 + 67979486 67979562 MLT1F 544 + 453 532 229932 11 4 6 12 21 22 28 chain 38018 chr10 135534747 + 68058620 68059089 MER4A1 472 + 3 472 72104 469 chain 524119 chr10 135534747 + 68089836 68096137 L1PA4 6152 - 9 6152 4756 140 1 0 231 1 0 490 10 14 143 0 1 237 235 0 406 0 57 439 0 17 31 4 6 721 2 1 1025 0 2 213 12 7 401 0 2 71 0 1 1042 2 1 444 chain 21044 chr10 135534747 + 68091100 68091324 AluYg6 310 - 1 225 123756 224 chain 33051 chr10 135534747 + 68124879 68125303 L1PA7 6471 + 6046 6469 79138 252 18 17 154 chain 18501 chr10 135534747 + 68140611 68140821 L1P1 4361 + 2431 2641 131490 210 chain 515072 chr10 135534747 + 68141721 68147850 L1PA6 6164 + 2 6152 5664 235 0 2 23 1 0 231 0 1 24 0 2 13 1 2 28 19 18 37 6 0 169 0 17 103 0 4 33 6 0 1381 0 1 128 0 6 723 1 2 4 0 1 849 3 0 609 1 0 185 0 1 481 0 2 835 chain 3048 chr10 135534747 + 68151431 68151467 LTR37B 484 + 260 296 224041 36 chain 11172 chr10 135534747 + 68164458 68164646 MER30 238 + 36 238 155550 21 10 5 43 8 0 10 8 33 40 0 2 48 chain 7813 chr10 135534747 + 68180609 68180721 L1MA4A 3247 + 3022 3132 172232 13 1 0 71 2 1 25 chain 370622 chr10 135534747 + 68187434 68191660 L1PA5 6144 + 1903 6138 11072 1597 0 1 158 0 1 928 0 1 682 0 4 23 0 4 589 1 0 141 1 0 106 chain 522692 chr10 135534747 + 68192437 68198904 L1PA7 6471 - 24 6465 4894 138 1 2 5 0 5 595 0 2 81 1 4 190 0 1 469 1 0 384 1 0 169 0 1 200 2 1 67 5 6 125 1 0 57 15 15 101 1 0 172 31 0 436 0 4 335 0 1 186 0 1 53 16 0 183 0 3 632 3 5 251 18 5 170 0 5 227 0 2 536 13 12 64 3 9 132 0 2 397 chain 539489 chr10 135534747 + 68202431 68208595 L1PA4 6152 + 3 6151 2902 573 1 0 260 17 0 1276 1 0 23 1 3 220 0 2 326 2 1 473 14 14 1391 0 1 444 1 0 1141 chain 46470 chr10 135534747 + 68233277 68233800 L1PA4 6152 - 2 526 61622 111 0 1 412 chain 44009 chr10 135534747 + 68277014 68277569 MER41A 554 + 0 554 64195 169 1 0 385 chain 88266 chr10 135534747 + 68301655 68302650 L1PA5 6144 + 5142 6138 40274 668 1 2 326 chain 216286 chr10 135534747 + 68377081 68379480 L1PA3long 6157 + 3756 6157 18099 60 0 1 743 0 1 345 0 1 997 2 1 252 chain 59260 chr10 135534747 + 68450085 68450737 L1PA3long 6157 - 0 655 53243 287 0 3 365 chain 309212 chr10 135534747 + 68450737 68454364 L1P1 4361 + 5 3626 13036 568 1 0 129 12 5 326 8 7 209 21 21 75 0 1 850 0 2 1428 chain 11689 chr10 135534747 + 68488890 68489205 L1PA11 4918 + 4340 4629 153525 8 0 7 38 2 1 13 2 0 67 2 0 14 0 2 18 4 0 9 48 38 12 60 44 18 chain 15192 chr10 135534747 + 68489254 68489541 L1PB1 5432 + 5162 5423 140797 6 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 15 6 19 8 5 14 2 0 24 2 0 21 1 0 13 1 0 14 1 0 5 chain 7252 chr10 135534747 + 68498955 68499120 MER5A 189 - 0 160 175754 55 8 0 11 48 50 19 0 1 24 chain 93363 chr10 135534747 + 68501403 68502471 MER11C 1089 + 2 1073 38549 597 0 1 353 1 3 117 chain 3977 chr10 135534747 + 68568364 68568573 Tigger7 736 + 92 317 207740 28 144 160 37 chain 4452 chr10 135534747 + 68584436 68584491 L1MD3 1191 + 853 908 201318 55 chain 22876 chr10 135534747 + 68605614 68605897 AluSz 310 + 8 290 116206 127 1 0 155 chain 87130 chr10 135534747 + 68618977 68619934 L1PA3long 6157 + 5200 6157 40724 957 chain 502994 chr10 135534747 + 68659151 68665277 L1PA6 6164 + 0 6154 6671 60 1 13 209 3 4 281 1 0 5 0 3 108 3 4 163 0 1 214 1 0 142 34 31 611 0 2 786 3 0 342 0 1 373 0 3 11 0 1 154 1 2 1195 0 7 121 8 13 336 0 3 5 18 15 166 3 0 447 0 1 167 16 16 138 chain 3451 chr10 135534747 + 68665471 68665513 L1MB1 2102 + 1965 2007 216192 42 chain 28838 chr10 135534747 + 68672715 68673026 AluYk4 311 + 0 311 89732 311 chain 24363 chr10 135534747 + 68709045 68709335 AluSp 311 + 13 301 108302 112 2 0 176 chain 23368 chr10 135534747 + 68784605 68784905 AluSp 311 + 0 300 113822 28 1 0 182 0 1 34 2 0 31 0 2 22 chain 44311 chr10 135534747 + 68785545 68786022 L1PA3long 6157 + 5676 6153 63811 477 chain 13630 chr10 135534747 + 68875081 68875256 L1PA3long 6157 + 5982 6157 145857 20 1 8 7 7 0 140 chain 7805 chr10 135534747 + 68902206 68902316 Tigger1 2417 - 0 109 172283 78 5 4 27 chain 34893 chr10 135534747 + 68918676 68919151 LTR2B 499 + 9 499 76352 5 1 0 48 2 0 7 1 0 32 13 32 169 0 1 16 1 0 180 chain 2779 chr10 135534747 + 68937983 68938056 MER45C 884 + 671 745 229053 21 29 30 23 chain 157921 chr10 135534747 + 68941674 68943453 L1PA4 6152 + 4365 6152 23604 465 5 8 1303 0 5 6 chain 165797 chr10 135534747 + 68985199 68990408 L1PB1 5432 + 19 4674 10622 392 1 2 228 4 5 74 8 9 570 1 0 96 1 0 7 8 1 195 0 5 50 320 3 32 0 1 95 0 4 56 0 4 284 1 0 135 2 23 235 8 7 22 1 8 48 318 13 84 0 1 126 0 1 56 0 3 385 0 1 314 0 1 128 21 15 76 0 3 4 0 1 544 7 28 47 0 9 111 4 5 62 2 0 46 chain 540320 chr10 135534747 + 68990427 68996428 L1PA3long 6157 + 6 6156 2770 28 0 1 118 0 1 622 0 128 243 0 14 845 0 1 1459 1 0 480 0 1 1357 0 4 848 chain 26673 chr10 135534747 + 68996447 68997285 L1PB1 5432 + 4674 5424 10622 43 0 3 88 1 0 4 5 3 159 1 0 126 66 14 24 1 0 9 16 11 9 2 0 53 1 2 4 2 0 11 1 0 42 2 1 16 1 0 4 23 9 15 29 24 18 8 7 18 5 4 9 1 0 16 1 0 4 chain 22226 chr10 135534747 + 69005346 69005632 AluSc 308 + 11 299 119222 177 5 8 61 2 1 41 chain 10552 chr10 135534747 + 69008592 69008717 MER85 139 + 4 139 158039 85 0 10 40 chain 4721 chr10 135534747 + 69009748 69009808 MER2 342 - 150 211 198268 56 0 1 4 chain 56239 chr10 135534747 + 69037981 69038729 MER4E 760 - 7 760 55002 289 0 1 4 1 0 4 10 9 270 33 36 120 0 3 17 chain 40091 chr10 135534747 + 69053285 69053737 L1PA4 6152 - 9 462 69196 139 0 1 313 chain 33236 chr10 135534747 + 69061045 69062198 L1MA8 2339 + 1588 2264 78819 19 9 0 29 22 20 30 0 1 153 4 0 70 0 4 18 481 58 19 1 0 19 1 0 58 65 33 37 7 4 9 0 1 26 6 0 9 33 32 20 1 0 7 chain 9753 chr10 135534747 + 69065028 69065134 L1HS 6032 + 5925 6031 161831 106 chain 21172 chr10 135534747 + 69072936 69073203 AluY 311 + 24 296 123295 110 16 21 141 chain 231397 chr10 135534747 + 69102194 69106007 L1MA2 4263 - 834 4258 17237 113 0 1 71 1 2 80 8 6 143 0 1 38 360 46 119 1 0 107 5 0 248 0 1 15 0 1 76 1 2 35 1 0 8 112 33 100 6 0 213 7 0 6 4 0 22 4 3 135 0 1 28 12 13 101 17 16 57 19 19 27 3 0 6 0 4 78 0 3 39 5 6 24 12 11 50 2 1 234 0 1 27 0 3 95 1 8 140 6 14 284 1 0 4 0 1 26 1 0 153 7 6 8 0 1 11 4 7 12 3 1 13 2 0 90 19 12 7 0 2 32 0 6 22 0 2 46 0 1 17 0 1 11 1 0 17 chain 245441 chr10 135534747 + 69123171 69126123 L1PA6 6164 + 3108 6162 16486 66 10 0 50 1 0 61 0 1 18 7 0 303 1 0 13 1 0 37 0 1 345 0 3 50 0 1 138 1 97 132 0 2 1391 0 20 155 2 0 161 0 1 4 1 0 4 chain 101878 chr10 135534747 + 69130990 69132152 L1PA5 6144 - 1 1166 36292 331 0 1 506 0 1 9 0 1 316 chain 108463 chr10 135534747 + 69132152 69133377 L1P1 4361 + 1398 2625 34572 714 1 3 144 0 1 54 1 0 311 chain 540058 chr10 135534747 + 69146802 69152824 L1PA3long 6157 + 1 6157 2809 7 3 0 144 0 1 215 1 0 399 11 139 1684 0 2 313 0 1 358 0 4 974 0 1 296 0 1 1617 chain 24479 chr10 135534747 + 69156449 69156812 THE1C 375 + 0 375 107661 114 0 1 10 8 5 55 11 12 14 8 20 16 0 1 6 0 1 95 1 0 25 chain 122231 chr10 135534747 + 69156812 69158397 THE1C-int 1605 + 0 1605 30300 14 2 1 430 0 7 48 7 2 9 0 5 56 0 2 7 0 1 90 0 1 4 1 0 305 7 8 108 16 23 150 0 3 331 chain 27232 chr10 135534747 + 69158397 69158764 THE1C 375 + 0 364 95490 44 0 1 33 1 0 38 18 15 144 1 2 72 1 0 15 chain 4662 chr10 135534747 + 69158967 69159025 Tigger2b_Pri 1066 - 1008 1066 198943 58 chain 18994 chr10 135534747 + 69159687 69159901 L1PA4 6152 - 9 222 130126 130 1 0 83 chain 26311 chr10 135534747 + 69161730 69162157 L1P4a 3072 + 38 451 98781 9 1 0 21 2 0 52 1 0 126 9 0 28 45 44 133 chain 8962 chr10 135534747 + 69167699 69169763 L1PA11 4918 + 3370 4629 165817 91 1744 973 41 2 0 13 5 4 16 4 0 11 29 20 10 8 6 12 2 0 11 47 33 18 chain 29724 chr10 135534747 + 69186238 69186571 L1PA6 6164 + 5829 6162 85742 333 chain 28945 chr10 135534747 + 69188345 69188766 MLT2A1 477 + 0 477 89248 142 0 1 20 6 10 37 7 5 121 0 10 34 8 48 30 1 0 9 0 4 6 chain 153343 chr10 135534747 + 69195080 69197217 L1PB1 5432 + 3303 5420 24178 93 9 18 68 24 23 107 0 2 115 1 3 572 0 1 75 0 1 235 8 5 373 3 4 103 10 9 15 39 33 9 2 0 53 2 1 16 1 0 44 1 0 14 25 13 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 132381 chr10 135534747 + 69202555 69242687 L1PA3long 6157 - 0 2181 27546 1167 37952 0 750 0 1 263 chain 28605 chr10 135534747 + 69229190 69229527 L1PA7 6471 + 6135 6470 90711 73 2 0 262 chain 11304 chr10 135534747 + 69230013 69230159 L1MA2 4263 - 158 298 155048 6 0 1 40 7 0 93 chain 5799 chr10 135534747 + 69233509 69233603 MER2 342 + 143 236 187152 33 0 1 32 10 8 19 chain 17909 chr10 135534747 + 69233603 69233854 LTR24 460 + 0 242 133083 94 2 0 20 1 0 15 6 0 113 chain 9107 chr10 135534747 + 69241382 69241481 L1PA3long 6157 - 874 973 165038 99 chain 75906 chr10 135534747 + 69242687 69243526 L1PA3long 6157 + 5309 6157 45329 635 1 10 203 chain 534003 chr10 135534747 + 69256703 69263182 L1PA7 6471 - 12 6468 3701 842 1 0 146 2 1 293 0 1 967 0 2 198 0 1 388 0 1 454 3 5 261 6 10 248 0 1 42 51 13 275 0 1 61 1 2 734 6 7 111 0 1 44 1 0 33 3 0 206 0 1 212 2 3 126 0 1 76 13 14 273 1 2 399 chain 244985 chr10 135534747 + 69268968 69271826 L1PA6 6164 - 16 2873 16510 829 1 6 412 17 11 391 0 2 254 0 1 167 4 0 122 0 1 661 chain 25862 chr10 135534747 + 69283880 69284178 AluYf5 307 + 1 305 100598 165 0 5 35 4 5 94 chain 5544 chr10 135534747 + 69286665 69286733 HSMAR2 1300 + 210 278 189622 68 chain 19164 chr10 135534747 + 69289198 69289407 L1PA3long 6157 + 5945 6154 129634 209 chain 29383 chr10 135534747 + 69289561 69289929 THE1B 368 + 0 368 87153 171 1 0 73 0 1 123 chain 117979 chr10 135534747 + 69289929 69291496 THE1B-int 1605 + 0 1594 31812 35 0 2 265 0 1 127 1 26 19 5 6 300 16 16 10 12 13 165 4 5 94 19 15 495 chain 7429 chr10 135534747 + 69304831 69304916 L1PA5 6144 - 1 86 174582 85 chain 4308 chr10 135534747 + 69312246 69312320 LTR1 825 - 607 680 203114 32 2 1 20 1 0 5 2 3 12 chain 289105 chr10 135534747 + 69313519 69316867 L1PA5 6144 - 0 3356 14078 611 0 3 232 1 4 546 0 1 114 0 1 4 1 0 622 0 1 92 0 1 25 1 0 1099 chain 518651 chr10 135534747 + 69318265 69324402 L1PA5 6144 + 3 6135 5316 112 19 5 15 12 26 17 0 1 381 10 9 128 7 0 452 0 3 1835 0 1 186 1 0 700 0 1 957 2 0 1303 chain 101061 chr10 135534747 + 69325832 69326939 L1PA3long 6157 + 5049 6157 36497 334 0 1 773 chain 94682 chr10 135534747 + 69336314 69337389 L1PA3long 6157 - 0 1108 38169 332 0 1 418 0 24 94 0 4 191 3 7 37 chain 525472 chr10 135534747 + 69338822 69344952 L1PA5 6144 - 9 6144 4631 1041 0 1 5 3 2 99 1 0 161 2 0 1549 0 1 102 1 0 186 0 1 957 0 1 859 9 0 780 0 1 240 0 14 135 chain 11871 chr10 135534747 + 69354507 69354786 L1PB1 5432 - 8 262 152738 8 1 0 11 2 1 13 1 0 19 7 6 19 3 1 14 1 0 5 2 0 19 41 27 45 2 1 12 8 7 46 chain 2873 chr10 135534747 + 69360258 69360423 L1ME3A 1206 + 658 832 227505 16 2 0 3 3 0 15 88 105 11 5 2 22 chain 23873 chr10 135534747 + 69365442 69365720 AluSq10 312 - 18 304 111069 123 0 8 155 chain 84588 chr10 135534747 + 69393487 69396423 L1PA11 4918 + 419 4016 16202 467 0 1 171 0 1 105 7 9 182 1 0 123 19 21 53 15 31 146 1 637 4 0 1 176 2 0 47 5 6 27 0 1 62 0 3 20 9 8 309 0 3 70 0 2 75 1 0 88 2 1 391 2 0 356 chain 468938 chr10 135534747 + 69396426 69401769 L1PA4 6152 + 790 6152 8074 1172 0 1 471 0 5 508 0 1 313 0 3 887 0 3 1140 1 0 702 4 3 39 0 1 98 0 7 8 chain 11467 chr10 135534747 + 69401789 69402187 L1PA11 4918 + 4016 4415 16202 315 4 6 58 1 0 20 chain 74401 chr10 135534747 + 69403294 69404160 L1PA7 6471 - 1 868 46316 154 8 9 704 chain 214625 chr10 135534747 + 69431119 69433479 L1PA4 6152 - 1 2362 18191 774 1 2 1585 chain 71747 chr10 135534747 + 69443397 69444273 LTR12 884 - 0 884 47591 128 0 8 372 2 0 306 0 1 19 0 1 49 chain 320158 chr10 135534747 + 69445791 69449699 HERV9-int 5642 - 862 5642 12588 258 0 9 561 7 942 81 0 2 1136 0 3 496 0 1 180 3 4 5 80 0 311 14 13 172 7 6 146 1 2 75 0 2 375 chain 52857 chr10 135534747 + 69449727 69450381 LTR12 884 - 0 655 57098 69 0 1 437 2 0 24 10 12 112 chain 8087 chr10 135534747 + 69450381 69450483 LTR12 884 - 782 884 170558 102 chain 164518 chr10 135534747 + 69450615 69452512 SVA_D 2077 + 6 2077 22744 18 7 1 699 0 3 34 3 0 126 0 183 187 53 0 95 0 49 43 0 1 632 chain 4750 chr10 135534747 + 69451689 69451742 SVA_D 2077 + 1429 1482 87987 53 chain 554592 chr10 135534747 + 69459396 69465546 L1PA3long 6157 + 4 6157 874 704 1 0 164 0 1 590 0 1 1712 0 1 517 0 1 2462 chain 22668 chr10 135534747 + 69470630 69470969 THE1B 368 + 0 366 117231 44 0 15 113 1 0 20 40 52 26 0 1 95 chain 32779 chr10 135534747 + 69471347 69471701 L1PA2 6032 - 7 361 79566 354 chain 20172 chr10 135534747 + 69471701 69471919 L1PA2 6032 + 5428 5646 126610 218 chain 105712 chr10 135534747 + 69472418 69473709 L1PA8 5853 + 4570 5853 35326 47 0 1 226 1 2 164 2 0 505 1 0 49 1 0 44 2 0 67 7 6 12 1 0 51 1 0 16 1 0 93 chain 59316 chr10 135534747 + 69473721 69474462 THE1B-int 1605 + 870 1605 53215 62 3 0 186 6 2 52 6 7 426 chain 442344 chr10 135534747 + 69476087 69481840 L1PA7 6471 - 4 6471 8986 9 0 2 137 1 2 630 1 2 68 0 3 854 2 1 90 0 4 189 1 2 46 0 3 101 5 10 245 0 4 512 0 4 18 0 2 6 7 5 822 10 9 46 14 0 94 15 4 41 35 7 93 6 7 240 297 0 23 0 2 131 7 0 211 0 1 438 0 1 217 0 1040 91 chain 87569 chr10 135534747 + 69497923 69499058 L1P2 5180 + 708 1862 40545 77 1 0 8 1 0 145 0 3 228 4 13 38 12 13 9 4 0 544 0 12 64 chain 17501 chr10 135534747 + 69499060 69499276 L1P1 4361 + 4128 4341 134262 22 1 0 155 1 0 23 2 1 12 chain 95430 chr10 135534747 + 69500000 69501077 L1PA3long 6157 + 5080 6157 37978 1077 chain 383346 chr10 135534747 + 69501119 69505428 L1PA4 6152 + 1841 6151 10657 478 0 1 129 4 3 194 1 7 1029 1 2 1547 0 1 101 6 0 669 1 0 149 chain 284879 chr10 135534747 + 69507143 69512808 L1PA10 4194 + 242 4161 14358 8 1 0 20 3 1 16 1 0 7 56 30 11 2 0 21 1 0 4 0 3 11 1 0 6 1 0 14 4 0 60 1 2 32 7 5 240 0 1 40 6 12 324 0 1 223 10 11 294 7 9 63 54 1 46 6 5 69 10 14 59 24 14 189 12 12 203 0 1 66 2 1 155 1 2 5 1 0 77 1 0 29 1667 16 22 12 12 238 0 1 8 9 0 32 1 2 547 1 0 6 6 0 26 0 1 82 6 10 182 0 5 267 3 0 34 1 0 11 chain 17354 chr10 135534747 + 69514988 69515278 L1MA4 2864 + 2087 2370 134642 30 2 1 56 22 21 33 24 22 84 3 0 36 chain 45238 chr10 135534747 + 69517100 69517660 MLT2A2 560 + 0 560 62785 194 10 13 156 3 0 197 chain 30505 chr10 135534747 + 69520341 69520755 MER1A 529 + 30 455 83417 50 0 3 84 0 6 33 27 25 129 5 9 86 chain 37207 chr10 135534747 + 69522394 69522844 LTR2 463 + 0 462 73231 200 1 13 249 chain 7921 chr10 135534747 + 69524260 69524342 tRNA-Ser-TCA 82 + 0 82 171521 82 chain 24911 chr10 135534747 + 69558516 69558822 AluSp 311 - 13 311 105275 15 8 0 113 0 1 37 1 0 132 chain 4544 chr10 135534747 + 69573161 69573226 L1MB7 1623 + 77 143 200298 5 2 0 35 0 3 23 chain 24612 chr10 135534747 + 69580528 69580829 AluSp 311 - 1 300 106926 5 2 0 294 chain 16328 chr10 135534747 + 69585080 69585316 7SLRNA 320 - 36 281 137410 129 12 19 32 10 12 53 chain 39790 chr10 135534747 + 69588637 69589499 LTR19B 566 + 36 566 69639 200 4 0 63 2 0 191 329 10 8 4 0 6 3 0 14 8 8 30 chain 4494 chr10 135534747 + 69592679 69592781 L1MC4a 1092 + 701 797 200855 4 1 0 15 13 5 33 10 13 26 chain 28301 chr10 135534747 + 69595764 69596122 L1PA8 5853 + 5502 5853 91940 62 1 0 46 2 0 72 1 0 11 1 0 47 2 1 19 1 0 93 chain 6499 chr10 135534747 + 69600877 69600960 MSTA 426 + 334 417 181244 83 chain 18274 chr10 135534747 + 69602500 69602717 AluSg7 307 - 79 296 132141 110 1 0 88 0 1 18 chain 24725 chr10 135534747 + 69624518 69624912 LTR39 781 + 169 613 106292 11 4 3 20 1 0 129 2 6 48 21 78 4 1 0 33 8 0 112 chain 4132 chr10 135534747 + 69626203 69626348 MLT1E1A 663 - 524 662 205473 23 6 5 19 56 55 8 5 0 28 chain 3776 chr10 135534747 + 69628513 69628651 Charlie2a 992 + 638 762 210726 37 1 0 5 45 47 13 12 0 17 3 0 5 chain 25484 chr10 135534747 + 69642666 69642957 AluSp 311 - 20 311 102298 291 chain 5050 chr10 135534747 + 69642957 69643020 L1PA8 5853 - 99 161 194634 10 1 0 52 chain 23899 chr10 135534747 + 69646614 69646928 AluSp 311 - 1 310 110915 14 2 0 14 7 5 149 1 0 127 chain 21365 chr10 135534747 + 69652900 69653204 L1PA8 5853 - 0 296 122634 47 1 0 45 2 1 19 2 1 49 1 0 11 1 0 70 2 0 46 1 0 7 chain 11573 chr10 135534747 + 69706154 69706374 L1M1 2793 + 2442 2673 154011 39 8 10 49 28 37 13 1 2 16 0 1 4 1 0 16 1 0 44 chain 18324 chr10 135534747 + 69739501 69739713 AluY 311 + 90 302 132003 212 chain 21614 chr10 135534747 + 69742858 69743238 L1MA2 4263 + 3640 4017 121711 20 24 23 21 7 10 95 3 0 131 32 30 47 chain 6819 chr10 135534747 + 69772593 69772729 Tigger1 2417 + 154 253 178808 61 38 1 37 chain 27512 chr10 135534747 + 69780241 69780542 AluYa5 310 + 0 298 94623 93 3 0 205 chain 25200 chr10 135534747 + 69851965 69852271 AluSq10 312 + 0 302 103745 45 5 1 256 chain 10659 chr10 135534747 + 69853103 69854388 MER41B 635 - 8 635 157572 43 0 6 67 1105 442 42 8 7 20 chain 18363 chr10 135534747 + 69923413 69923648 LTR26E 604 - 363 604 131902 91 0 1 42 5 4 38 0 6 59 chain 18021 chr10 135534747 + 69958495 69958731 L1PA8A 6298 + 6052 6290 132801 104 11 16 12 1 0 3 2 0 103 chain 8995 chr10 135534747 + 69978631 69978771 Tigger1 2417 + 2220 2387 165633 36 1 0 39 0 5 31 1 0 6 1 2 18 0 23 7 chain 6909 chr10 135534747 + 70018908 70019062 L1MA5A 2387 - 28 157 178126 19 13 10 15 34 13 7 1 0 65 chain 2737 chr10 135534747 + 70030569 70030615 MER5A 189 - 113 153 229655 32 6 0 8 chain 17167 chr10 135534747 + 70032609 70032852 MER4B 649 + 0 297 135118 59 0 1 55 10 17 25 0 42 18 0 2 27 0 1 18 0 1 31 chain 10901 chr10 135534747 + 70032852 70032999 L1PA8 5853 + 5698 5847 156583 42 2 1 17 1 4 85 chain 122734 chr10 135534747 + 70036851 70038417 THE1B-int 1605 + 0 1592 30148 15 0 2 110 0 1 304 10 35 207 1 2 579 0 1 83 8 4 249 chain 82448 chr10 135534747 + 70039074 70040015 SVA_C 1631 + 348 1608 42564 119 0 113 217 0 82 31 1 0 45 3 127 217 0 1 308 chain 24046 chr10 135534747 + 70050196 70050486 AluSp 311 + 4 295 110068 265 0 1 25 chain 22225 chr10 135534747 + 70083962 70084220 AluSc 308 - 39 297 119233 258 chain 23846 chr10 135534747 + 70128145 70128420 AluSp 311 + 11 286 111208 275 chain 7090 chr10 135534747 + 70145374 70145460 L1PA8 5853 - 0 86 176831 86 chain 28770 chr10 135534747 + 70171974 70172275 AluYa5 310 - 9 310 90017 301 chain 9623 chr10 135534747 + 70199175 70199312 AluY 311 + 0 134 162473 53 11 8 73 chain 2928 chr10 135534747 + 70258611 70258646 MamRep1894 122 - 84 119 226557 35 chain 28965 chr10 135534747 + 70272112 70272421 AluYa5 310 + 0 307 89154 123 2 0 184 chain 20085 chr10 135534747 + 70274501 70274783 AluSq10 312 - 19 301 126874 103 24 24 155 chain 46691 chr10 135534747 + 70275835 70276427 LTR10C 591 - 2 591 61465 80 0 2 234 13 8 126 0 1 4 5 4 130 chain 29326 chr10 135534747 + 70281339 70281653 AluYa5 310 - 0 310 87410 187 4 0 123 chain 23367 chr10 135534747 + 70283795 70284088 AluY 311 + 10 303 113828 122 0 1 81 10 5 48 1 5 31 chain 72850 chr10 135534747 + 70285428 70286393 LTR5_Hs 974 + 0 974 47098 168 8 11 110 0 1 177 0 1 184 8 7 160 8 15 19 20 18 103 chain 47653 chr10 135534747 + 70289618 70290505 LTR10C 591 - 0 591 60736 81 0 2 302 0 6 131 304 0 69 chain 22784 chr10 135534747 + 70373422 70373712 AluSq10 312 + 11 300 116658 8 0 1 12 1 0 87 1 0 4 1 2 4 1 0 171 chain 24200 chr10 135534747 + 70384057 70384336 AluSp 311 - 23 302 109212 279 chain 24456 chr10 135534747 + 70391799 70392092 AluY 311 + 0 296 107771 70 0 3 223 chain 7427 chr10 135534747 + 70409868 70410000 MER20 218 - 42 165 174597 83 32 23 17 chain 21247 chr10 135534747 + 70466448 70466732 AluSp 311 + 10 298 123029 128 10 16 122 8 6 16 chain 21699 chr10 135534747 + 70477817 70478138 AluY 311 + 6 288 121394 92 36 11 22 2 0 24 12 0 133 chain 49730 chr10 135534747 + 70479720 70480631 L1PA5 6144 + 5543 6142 59209 294 3 0 14 305 0 59 0 2 223 6 0 7 chain 11203 chr10 135534747 + 70498532 70498671 AluSz 310 + 11 150 155409 139 chain 8538 chr10 135534747 + 70506653 70506745 L1PA3long 6157 - 2 94 168082 92 chain 24029 chr10 135534747 + 70510774 70511073 AluSq2 311 - 0 301 110168 177 0 2 122 chain 2825 chr10 135534747 + 70545622 70545666 L1MB8 1703 - 191 238 228299 27 1 4 16 chain 23829 chr10 135534747 + 70576041 70576325 AluSc 308 - 15 298 111314 170 1 0 113 chain 51859 chr10 135534747 + 70581878 70582861 LTR12D 1347 - 13 942 57712 48 317 14 77 0 200 251 0 1 32 1 18 125 2 33 130 chain 4530 chr10 135534747 + 70598857 70598984 L1M3 994 + 323 438 200445 45 53 42 16 1 0 12 chain 6129 chr10 135534747 + 70606571 70606646 U6 107 + 11 86 184185 75 chain 20703 chr10 135534747 + 70607476 70607775 AluSp 311 - 3 300 124956 67 49 47 183 chain 28779 chr10 135534747 + 70612005 70612313 AluYb8 318 - 10 318 89984 308 chain 196133 chr10 135534747 + 70621308 70625123 HERVK9-int 4720 - 0 3358 19490 10 0 1 8 9 8 272 1 0 34 656 12 41 0 2 408 3 4 28 206 0 8 1 0 6 0 1 110 84 839 232 1 0 18 0 3 70 0 4 88 381 0 115 0 5 378 1 6 227 0 1 419 chain 9728 chr10 135534747 + 70634338 70634441 AluYa8 305 + 202 305 161947 103 chain 22727 chr10 135534747 + 70635936 70636201 AluSp 311 - 35 301 116944 116 0 1 149 chain 2947 chr10 135534747 + 70649056 70649087 U2 167 + 0 31 226123 31 chain 25017 chr10 135534747 + 70723582 70723881 AluY 311 + 8 309 104696 118 0 1 109 0 1 72 chain 2377 chr10 135534747 + 70732458 70732538 MER33 330 + 12 98 234405 17 4 12 17 28 26 14 chain 13956 chr10 135534747 + 70745738 70745901 AluY 311 + 128 291 144725 163 chain 9184 chr10 135534747 + 70747738 70747882 L1PA8 5853 - 0 141 164638 6 1 0 86 27 25 24 chain 10058 chr10 135534747 + 70757723 70757865 MSTA 426 + 264 426 160279 32 7 27 103 chain 52365 chr10 135534747 + 70789905 70790559 PABL_A 660 - 0 660 57386 64 1 0 446 3 1 59 0 9 81 chain 5148 chr10 135534747 + 70809327 70809402 MER33 330 + 194 265 193560 5 2 0 58 2 0 8 chain 22752 chr10 135534747 + 70810571 70810867 AluSc8 310 + 5 298 116816 128 16 12 70 0 1 82 chain 26865 chr10 135534747 + 70814782 70815071 L1PA2 6032 + 5743 6032 96757 289 chain 2900 chr10 135534747 + 70823837 70823917 MER5A 189 - 70 146 227043 18 36 32 26 chain 22434 chr10 135534747 + 70873370 70873637 AluSc5 308 + 11 277 118326 41 2 1 224 chain 6289 chr10 135534747 + 70927996 70928091 MER20 218 + 93 189 182891 51 13 14 31 chain 34136 chr10 135534747 + 70935127 70935654 LTR12F 595 + 0 595 77428 25 0 1 77 0 1 21 8 10 11 2 0 30 18 9 16 0 33 52 0 64 7 2 1 28 20 2 71 3 0 136 chain 23941 chr10 135534747 + 70961602 70961884 AluSc5 308 - 16 298 110679 282 chain 29890 chr10 135534747 + 70998119 70998431 AluYb8 318 - 6 318 85136 312 chain 10069 chr10 135534747 + 71064363 71064490 LTR8 732 - 558 693 160225 11 0 6 104 0 2 12 chain 4015 chr10 135534747 + 71064652 71064787 MLT1C 463 - 82 228 207145 37 71 82 27 chain 8709 chr10 135534747 + 71070358 71070530 MER4B 649 - 20 196 167148 23 0 1 43 1 0 26 47 51 32 chain 7243 chr10 135534747 + 71107110 71107609 LTR29 598 - 254 462 175811 24 7 6 16 8 9 13 322 27 29 11 10 40 10 15 19 chain 20894 chr10 135534747 + 71114027 71114398 THE1C 375 - 0 375 124297 126 30 34 33 7 8 88 38 39 33 2 0 14 chain 3810 chr10 135534747 + 71147553 71147618 LTR37A 408 - 46 112 210230 14 8 9 43 chain 80878 chr10 135534747 + 71248265 71249338 MER11A 1151 - 0 1151 43239 134 1 0 45 0 1 109 30 0 26 1 0 154 6 18 105 1 0 12 12 13 90 0 1 149 5 1 84 1 2 38 0 99 70 chain 73587 chr10 135534747 + 71270657 71271532 L1P3 4156 - 17 893 46740 32 2 0 108 2 1 453 0 4 58 0 1 7 1 0 212 chain 25384 chr10 135534747 + 71271540 71271850 L1PA7 6471 + 6154 6465 102762 175 1 2 134 chain 6704 chr10 135534747 + 71272738 71272824 L1ME1 1623 - 343 428 179656 72 1 0 13 chain 9623 chr10 135534747 + 71286951 71287069 MER30 238 - 0 161 162475 106 0 43 12 chain 2920 chr10 135534747 + 71289837 71289868 L1PB2 3958 - 120 151 226684 31 chain 123008 chr10 135534747 + 71291635 71293396 L1PB1 5432 + 3686 5408 30046 27 0 1 11 31 0 24 12 15 186 19 26 527 0 1 122 3 0 38 0 3 86 11 12 197 0 12 129 1 2 11 11 7 15 1 0 8 1 0 12 15 9 53 2 1 16 1 0 44 1 0 10 8 5 11 14 6 14 3 1 4 1 0 16 2 0 22 1 0 21 1 0 13 1 0 4 chain 5733 chr10 135534747 + 71301029 71301109 THE1-int 844 + 743 819 185705 8 1 0 21 2 0 34 1 0 13 chain 74165 chr10 135534747 + 71301109 71302223 THE1C-int 1605 - 172 1605 46424 7 0 1 19 7 5 59 5 12 18 26 233 61 7 3 177 0 3 74 38 76 233 0 7 112 0 6 150 4 58 86 13 15 18 chain 25634 chr10 135534747 + 71302223 71302586 THE1C 375 - 0 350 101570 26 1 0 151 3 4 12 17 4 153 chain 19556 chr10 135534747 + 71308913 71309336 LTR47A 437 + 0 424 128504 62 7 8 35 18 40 16 76 50 5 0 2 35 16 12 20 11 17 122 chain 22472 chr10 135534747 + 71346666 71347053 THE1D 372 + 0 372 118145 13 0 2 17 1 0 23 65 47 80 9 11 32 1 0 82 0 1 64 chain 61843 chr10 135534747 + 71358456 71359235 L1PREC2 3366 - 620 1399 51979 18 2 0 8 0 1 281 0 1 54 1 0 135 0 1 71 0 2 2 2 0 205 chain 8696 chr10 135534747 + 71367232 71367340 MSTA 426 + 318 426 167216 108 chain 6967 chr10 135534747 + 71371834 71371955 L1MC3 1789 + 274 386 177698 15 7 1 12 10 7 77 chain 4344 chr10 135534747 + 71401834 71401906 MLT1F2 592 - 37 125 202682 45 1 16 16 1 2 9 chain 3716 chr10 135534747 + 71413003 71413043 MER52D 1964 + 1167 1207 211697 40 chain 108412 chr10 135534747 + 71430361 71431637 L1PA7 6471 + 5138 6461 34586 215 0 1 235 10 48 108 2 10 706 chain 23840 chr10 135534747 + 71450562 71450982 MSTB 430 + 0 429 111252 98 6 7 99 1 0 6 60 68 17 0 1 12 17 17 104 chain 49640 chr10 135534747 + 71458011 71458576 L1PA6 6164 + 5588 6153 59282 565 chain 32838 chr10 135534747 + 71465544 71465995 MER4A1 472 + 0 472 79480 13 2 0 164 0 1 57 1 2 10 21 42 183 chain 4720 chr10 135534747 + 71474501 71474566 MIR 256 - 141 206 198275 27 1 0 4 0 1 33 chain 3788 chr10 135534747 + 71500192 71500256 MIR3 191 + 50 118 210538 10 1 0 4 2 7 47 chain 22714 chr10 135534747 + 71537931 71538200 AluY 311 + 28 300 117014 95 1 0 8 0 2 142 0 2 23 chain 7274 chr10 135534747 + 71540620 71540707 Tigger2a 444 + 6 93 175630 87 chain 4122 chr10 135534747 + 71572457 71572531 MADE1 96 - 6 95 205623 16 17 32 41 chain 5089 chr10 135534747 + 71590714 71590781 L1MB8 1703 - 213 279 194190 55 2 0 5 0 1 5 chain 3281 chr10 135534747 + 71592248 71592286 tRNA-Trp-TGG 72 + 0 38 219343 38 chain 4573 chr10 135534747 + 71641581 71641633 MIR 256 - 119 171 199959 52 chain 3031 chr10 135534747 + 71658843 71658896 MIRb 242 - 120 174 224355 30 8 9 15 chain 11500 chr10 135534747 + 71667510 71667742 MSTD 398 - 240 398 154297 18 83 9 131 chain 163639 chr10 135534747 + 71751837 71753613 SVA_E 1901 - 10 1901 22856 138 6 0 564 0 1 93 1 0 136 1 123 19 1 0 672 1 0 136 0 1 8 chain 245408 chr10 135534747 + 71781910 71785789 L1PB1 5432 + 1933 5422 16488 42 1 0 521 3 0 98 1 0 4 0 1 19 310 0 148 1 0 4 6 9 41 2 1 13 0 1 172 2 0 3 4 0 4 0 1 65 22 6 177 2 1 209 0 1 228 6 30 88 0 4 67 5 6 388 0 1 15 0 1 4 1 0 7 0 2 171 6 8 52 1 0 20 25 0 14 11 7 127 12 10 126 3 12 96 0 14 130 52 19 13 1 0 12 1 0 10 2 0 3 2 0 9 2 0 51 1 0 17 1 0 45 1 0 10 29 17 10 17 9 5 1 0 14 2 0 24 14 0 22 1 0 12 1 0 8 0 1 9 chain 74144 chr10 135534747 + 71796516 71797343 L1PA3long 6157 - 0 830 46434 754 0 3 73 chain 77681 chr10 135534747 + 71801137 71802188 MER11C 1089 + 0 1063 44665 246 0 9 62 0 4 65 1 0 149 73 69 86 6 9 38 0 1 127 0 1 54 1 0 143 chain 33227 chr10 135534747 + 71803730 71804173 L1PA8 5853 - 0 445 78835 93 1 0 19 2 1 52 12 10 20 0 8 42 2 0 44 1 0 47 1 2 107 chain 45870 chr10 135534747 + 71806814 71807333 L1PA5 6144 + 5615 6134 62153 519 chain 19283 chr10 135534747 + 71834283 71834641 THE1B 368 + 4 368 129278 104 17 18 43 68 74 61 2 0 6 1 2 56 chain 7430 chr10 135534747 + 71841559 71841701 L1MA3 4352 + 4168 4308 174574 11 1 0 69 19 20 14 1 0 5 2 1 20 chain 3155 chr10 135534747 + 71869354 71869421 MER5A1 166 + 0 83 221858 25 22 38 20 chain 5443 chr10 135534747 + 71885542 71885633 LTR29 598 + 422 511 190579 32 11 11 29 2 0 17 chain 21474 chr10 135534747 + 71893829 71894111 AluSq2 311 + 9 300 122241 99 8 17 175 chain 16330 chr10 135534747 + 71923027 71923277 Tigger1 2417 + 885 1159 137404 30 5 27 8 4 0 51 6 10 94 1 3 51 chain 25676 chr10 135534747 + 71924775 71925045 AluYa5 310 + 36 306 101386 270 chain 33148 chr10 135534747 + 71947039 71947408 L1PA4 6152 - 9 377 78989 140 1 0 228 chain 10265 chr10 135534747 + 71954963 71955199 L1PB1 5432 - 12 223 159304 16 1 0 13 1 0 21 1 0 20 6 4 14 1 0 5 2 0 19 46 31 41 1 0 15 2 1 11 chain 3111 chr10 135534747 + 71982316 71982352 tRNA-Gly-GGY 63 + 0 36 222744 36 chain 30012 chr10 135534747 + 71982433 71982782 L1PA4 6152 - 0 343 84765 80 7 0 160 0 1 102 chain 151422 chr10 135534747 + 71997839 72000484 SVA_A 1864 - 9 1846 24406 526 65 0 84 2 0 75 3 0 26 1 0 52 116 0 79 40 0 127 1 0 11 40 0 35 2 0 77 230 0 73 116 0 19 40 0 91 9 8 41 1 4 33 80 0 56 71 1 195 10 6 218 chain 7386 chr10 135534747 + 71998673 71998789 SVA_A 1864 - 1030 1106 59526 36 3 0 34 37 0 6 chain 1886 chr10 135534747 + 71998746 71998781 SVA_A 1864 - 953 987 78364 25 1 0 9 chain 2547 chr10 135534747 + 71998868 71998908 SVA_A 1864 - 1222 1259 59526 29 8 5 3 chain 1465 chr10 135534747 + 71999047 71999082 SVA_A 1864 - 879 914 62581 35 chain 7878 chr10 135534747 + 71999206 71999409 SVA_A 1864 - 1105 1267 101179 40 40 0 93 10 9 20 chain 2522 chr10 135534747 + 71999246 71999282 SVA_A 1864 - 1295 1331 117435 36 chain 1549 chr10 135534747 + 71999504 71999541 SVA_A 1864 - 1024 1061 62581 37 chain 2316 chr10 135534747 + 71999541 71999608 SVA_A 1864 - 951 978 136312 9 40 0 18 chain 2904 chr10 135534747 + 71999553 71999590 SVA_A 1864 - 775 812 147227 37 chain 1674 chr10 135534747 + 71999639 71999679 SVA_A 1864 - 1080 1119 62581 21 1 0 18 chain 2030 chr10 135534747 + 71999896 71999934 SVA_A 1864 - 1105 1143 143673 38 chain 2494 chr10 135534747 + 72000015 72000043 SVA_A 1864 - 1372 1400 233182 28 chain 4330 chr10 135534747 + 72001671 72001725 L1MB3 1562 + 1258 1312 202831 54 chain 88441 chr10 135534747 + 72016946 72017977 LTR5A 1029 + 0 1029 40208 150 1 0 812 1 0 67 chain 3480 chr10 135534747 + 72048074 72048113 MLT1B 390 + 347 386 215660 39 chain 27910 chr10 135534747 + 72062465 72062765 AluYg6 310 - 11 310 93322 168 1 0 131 chain 8438 chr10 135534747 + 72126549 72126653 MER2 342 + 147 251 168634 104 chain 3249 chr10 135534747 + 72136001 72136045 MER112 246 - 0 43 220031 15 1 0 28 chain 10245 chr10 135534747 + 72151163 72151288 AluSz6 309 + 8 133 159397 125 chain 95160 chr10 135534747 + 72166890 72168074 SVA_D 2077 - 19 1394 38050 580 0 115 20 3 0 123 0 1 132 0 51 89 35 0 4 3 0 25 2 0 15 3 0 25 1 0 8 27 59 10 1 0 36 0 40 42 chain 1703 chr10 135534747 + 72167837 72167872 SVA_D 2077 - 777 813 87105 33 0 1 2 chain 1314 chr10 135534747 + 72167958 72167985 SVA_D 2077 - 849 876 87105 27 chain 3771 chr10 135534747 + 72209614 72209655 MIRc 230 - 98 139 210793 41 chain 3503 chr10 135534747 + 72260456 72260500 MIR 256 + 101 145 215308 44 chain 21234 chr10 135534747 + 72262658 72262910 AluSp 311 - 34 286 123078 252 chain 3256 chr10 135534747 + 72271814 72271925 MSTD 398 - 281 398 219850 26 2 0 13 54 62 16 chain 27356 chr10 135534747 + 72318517 72318889 MER83 447 - 70 447 95092 20 0 1 226 0 2 18 1 3 4 1 0 74 6 7 22 chain 3598 chr10 135534747 + 72348359 72348405 MADE1 96 - 51 94 213678 31 3 0 12 chain 43786 chr10 135534747 + 72349955 72350577 MER41B 635 - 0 635 64469 68 13 18 15 5 10 94 6 7 233 5 6 54 1 2 128 chain 15004 chr10 135534747 + 72357504 72357720 MER30 238 - 5 238 141309 111 13 23 71 5 12 16 chain 9437 chr10 135534747 + 72380913 72381031 MER57B2 428 + 1 119 163376 118 chain 25492 chr10 135534747 + 72384720 72385032 AluSp 311 + 1 306 102262 17 1 5 274 11 0 9 chain 134370 chr10 135534747 + 72390223 72391763 SVA_D 2077 + 76 2077 27139 764 0 309 39 0 1 8 7 93 24 0 1 10 9 70 6 4 0 11 0 1 266 0 2 295 0 4 97 chain 36748 chr10 135534747 + 72394229 72394757 LTR10F 562 - 0 562 73879 87 2 0 172 0 3 21 0 34 10 9 5 35 11 42 18 28 0 135 chain 515232 chr10 135534747 + 72399243 72405374 L1PA6 6164 - 4 6164 5643 180 0 1 279 0 2 7 2 0 295 0 2 71 0 4 276 1 0 400 1 0 747 0 1 198 1 3 365 2 1 150 6 5 391 0 1 9 0 1 445 0 1 92 1 3 1163 2 1 157 0 1 90 1 18 233 1 0 99 0 9 10 8 0 158 15 17 93 1 0 181 chain 7725 chr10 135534747 + 72406628 72406815 L1PB1 5432 + 5254 5422 172747 26 1 0 16 1 0 4 2 0 10 8 0 16 3 1 5 1 0 14 3 1 11 1 2 10 5 7 5 3 0 9 1 0 13 1 0 18 chain 10446 chr10 135534747 + 72414300 72414419 MER50 708 - 27 146 158512 119 chain 10476 chr10 135534747 + 72419058 72419213 Tigger1 2417 - 82 248 158362 37 14 26 21 1 0 82 chain 57235 chr10 135534747 + 72419231 72419978 Tigger1 2417 + 1624 2381 54378 92 1 0 92 1 0 354 0 1 93 1 0 28 11 23 74 chain 74970 chr10 135534747 + 72427482 72428436 MER11B 1079 + 0 943 46024 259 3 0 304 34 32 177 6 0 171 chain 3493 chr10 135534747 + 72436064 72436106 MER106A 234 - 78 120 215486 42 chain 165501 chr10 135534747 + 72446037 72448599 SVA_F 1814 - 0 1801 22591 540 547 0 307 232 20 10 0 1 56 3 0 867 chain 6886 chr10 135534747 + 72446582 72446721 SVA_F 1814 - 582 718 83267 45 2 0 10 1 0 81 chain 18063 chr10 135534747 + 72446721 72447124 SVA_F 1814 - 542 716 70166 91 1 0 2 228 0 81 chain 5301 chr10 135534747 + 72446815 72446922 SVA_F 1814 - 811 1150 83267 2 1 0 36 0 233 68 chain 1291 chr10 135534747 + 72446936 72446991 SVA_F 1814 - 867 921 194680 10 1 0 44 chain 878 chr10 135534747 + 72447435 72447463 SVA_F 1814 - 866 894 158074 28 chain 6141 chr10 135534747 + 72447463 72447600 SVA_F 1814 - 1024 1150 70166 14 51 0 14 0 40 58 chain 1600 chr10 135534747 + 72447477 72447528 SVA_F 1814 - 908 959 158074 7 2 1 17 0 1 25 chain 5460 chr10 135534747 + 72447600 72447662 SVA_F 1814 - 614 676 142256 62 chain 3525 chr10 135534747 + 72483709 72483838 MIRb 242 + 77 220 214959 28 46 47 15 18 31 22 chain 2811 chr10 135534747 + 72551816 72551846 MER84 505 - 425 455 228600 30 chain 12651 chr10 135534747 + 72599558 72599748 MER30 238 - 0 199 149639 49 3 0 29 1 7 31 4 10 73 chain 3242 chr10 135534747 + 72603612 72603690 MER58B 340 + 121 201 220199 12 0 1 24 26 27 16 chain 122817 chr10 135534747 + 72621217 72622664 LTR12C 1709 + 0 1709 30108 324 1 2 264 18 0 60 0 278 184 1 0 4 4 2 106 0 4 481 chain 23793 chr10 135534747 + 72744227 72744629 MSTA 426 - 0 421 111511 69 0 2 35 12 20 22 6 5 27 19 18 20 2 0 51 14 26 27 6 7 92 chain 38375 chr10 135534747 + 72762823 72763341 MLT2A2 560 - 0 560 71610 147 5 16 51 6 38 125 1 0 183 chain 31571 chr10 135534747 + 72776484 72776987 MLT2A1 477 - 0 477 81529 37 6 3 11 5 0 10 2 0 7 5 0 9 5 0 7 1 0 6 29 23 5 0 2 152 0 1 24 14 12 168 chain 461657 chr10 135534747 + 72776987 72782749 HERVL-int 5654 - 0 5654 8347 172 0 1 122 0 14 1011 1 0 4 0 1 205 0 1 98 5 6 523 0 1 322 0 4 160 1 2 496 0 7 10 1 0 222 5 0 572 0 1 254 157 0 47 1 0 280 1 0 57 1 0 186 0 5 41 0 1 174 1 0 148 5 6 85 0 4 101 0 14 33 0 1 17 0 1 225 0 1 18 chain 12138 chr10 135534747 + 72781181 72781328 HERVL-int 5654 - 4716 4864 151661 109 0 1 38 chain 40902 chr10 135534747 + 72794468 72794912 L1PA3long 6157 + 5713 6157 68029 444 chain 22106 chr10 135534747 + 72865083 72865364 AluSc5 308 + 10 291 119754 113 1 0 150 5 6 12 chain 27030 chr10 135534747 + 72865922 72866274 THE1A 353 + 0 353 96186 110 1 0 128 4 5 58 0 1 51 chain 127716 chr10 135534747 + 72866275 72867839 THE1A-int 1579 + 1 1579 28639 240 8 11 551 0 3 74 0 3 37 6 7 227 0 3 416 0 1 5 chain 116940 chr10 135534747 + 72876983 72878472 THE1B-int 1605 + 81 1600 32146 77 1 0 272 1 26 310 0 1 368 0 4 197 7 13 119 5 0 132 chain 231555 chr10 135534747 + 72880395 72884003 L1PA13 3608 - 120 3462 17228 21 1 0 19 2 0 5 2 0 49 3 1 58 1 0 62 2 0 113 1 0 12 0 1 19 1 0 157 0 15 10 0 3 446 1 4 94 100 102 204 0 1 150 1 0 289 1 4 196 1 2 137 11 21 160 0 13 32 0 5 181 1 0 92 0 1 114 1 5 59 2 0 52 0 4 5 298 0 38 1 0 16 2 0 12 8 6 16 2 1 18 6 2 8 1 0 8 2 0 17 1 0 12 1 0 47 4 3 75 2 0 22 1 2 36 41 30 24 6 16 15 chain 33967 chr10 135534747 + 72979002 72979437 MLT2A1 477 - 0 477 77667 38 13 56 179 0 1 21 0 1 11 4 1 169 chain 14965 chr10 135534747 + 72986650 72987325 L1PB1 5432 + 5106 5430 141431 8 3 0 20 1 0 12 1 0 12 335 14 41 9 8 15 1 0 43 2 1 14 24 14 18 26 21 23 1 0 22 4 0 12 1 0 22 1 0 4 chain 3085 chr10 135534747 + 73317403 73317443 HAL1 992 - 502 542 223174 40 chain 3103 chr10 135534747 + 73343817 73343852 MER5A 189 - 148 183 222871 35 chain 3143 chr10 135534747 + 73463077 73463222 MIR 256 + 8 154 222091 15 73 73 13 11 12 33 chain 26366 chr10 135534747 + 73560907 73561210 AluSp 311 - 7 311 98550 72 0 1 231 chain 21858 chr10 135534747 + 73594711 73594979 AluY 311 + 0 288 120787 131 5 0 96 0 25 36 chain 56135 chr10 135534747 + 73609655 73610420 MER4E 760 + 7 760 55044 17 1 0 33 0 1 95 2 0 13 9 0 165 9 11 29 1 2 69 6 5 86 5 1 188 1 3 5 1 0 18 1 0 4 0 1 7 chain 7268 chr10 135534747 + 73611928 73612075 MER39 703 - 20 162 175665 24 44 39 79 chain 164622 chr10 135534747 + 73628415 73636503 SVA_D 2077 - 0 2075 22722 6 2 0 626 1 0 44 4 0 13 123 0 175 1 0 23 6007 0 60 0 49 43 0 2 84 0 36 13 2 0 138 0 40 723 chain 5435 chr10 135534747 + 73629111 73629185 SVA_D 2077 - 918 992 89280 74 chain 4125 chr10 135534747 + 73629185 73629234 SVA_D 2077 - 689 738 39343 49 chain 69963 chr10 135534747 + 73629433 73630264 SVA_D 2077 - 1065 2077 39343 60 0 36 38 1 0 115 0 40 113 0 116 448 1 9 8 3 0 6 17 2 21 chain 48248 chr10 135534747 + 73634921 73635440 SVA_D 2077 - 16 535 54075 519 chain 6729 chr10 135534747 + 73644458 73644533 MER4C 627 + 1 76 179476 75 chain 3037 chr10 135534747 + 73657257 73657295 MSTB 430 + 7 47 224269 14 0 2 24 chain 28124 chr10 135534747 + 73658303 73659413 L1M1 2793 - 1598 2301 92555 17 1 0 56 8 6 93 10 20 12 3 5 67 26 26 41 322 15 6 2 0 57 25 21 9 2 0 4 2 0 11 41 28 40 133 64 7 3 0 11 1 0 11 1 0 4 3 0 8 43 36 9 1 0 15 1 0 4 chain 22086 chr10 135534747 + 73664314 73664571 AluY 311 + 41 299 119856 91 0 1 166 chain 28852 chr10 135534747 + 73671855 73672160 AluYa5 310 - 5 310 89663 305 chain 7652 chr10 135534747 + 73680071 73680179 MER41B 635 - 39 153 173213 44 0 5 38 6 7 20 chain 22252 chr10 135534747 + 73690076 73690350 AluSq10 312 + 26 298 119113 149 10 8 115 chain 15950 chr10 135534747 + 73694480 73695169 L1PB1 5432 - 39 387 138517 23 1 0 20 269 24 14 42 22 9 1 0 45 1 0 15 2 1 51 19 13 12 1 0 10 1 0 10 13 8 10 62 3 58 chain 176420 chr10 135534747 + 73701442 73703567 Harlequin-int 5206 + 143 2250 21313 8 5 0 137 1 0 6 6 0 12 1 0 176 6 1 199 1 0 498 0 1 247 2 0 101 0 2 95 0 1 295 0 1 13 2 0 314 chain 9970 chr10 135534747 + 73712756 73713465 HERVFH21-int 991 - 38 455 160729 22 1 0 5 44 0 10 16 13 24 40 3 10 14 0 6 2 0 42 1 0 8 5 1 21 18 0 12 26 18 10 4 0 12 285 134 12 27 22 32 chain 41154 chr10 135534747 + 73714946 73715515 LTR14B 630 + 23 630 67709 62 0 1 77 1 0 99 0 11 21 0 25 28 7 8 35 0 9 25 18 10 196 chain 78621 chr10 135534747 + 73715716 73716680 LTR13_ 950 + 0 950 44215 52 1 0 554 11 0 46 13 11 287 chain 114736 chr10 135534747 + 73717004 73718682 HERVK14-int 1672 + 8 1659 32866 22 1 0 10 1 0 24 0 1 25 1 0 132 0 1 77 51 48 65 27 20 5 0 3 127 1 0 47 1 0 11 2 0 193 1 0 133 3 2 10 1 2 9 1 0 7 1 0 79 14 10 33 2 1 203 1 0 108 1 0 37 7 6 20 1 0 20 23 20 140 chain 32468 chr10 135534747 + 73727873 73728288 L1PA15 4387 - 338 748 80080 116 1 0 40 4 2 76 7 5 171 chain 4382 chr10 135534747 + 73734078 73734128 MIRb 242 - 110 160 202163 50 chain 11944 chr10 135534747 + 73752740 73752959 MER30 238 + 0 235 152424 16 17 24 64 7 0 6 13 30 18 1 0 77 chain 40969 chr10 135534747 + 73792402 73792949 MER41A 554 + 0 545 67957 185 1 2 158 5 1 119 14 16 44 10 9 11 chain 17108 chr10 135534747 + 73801067 73801303 L1PB4 2604 - 154 389 135288 60 8 7 168 chain 24095 chr10 135534747 + 73837991 73838275 AluY 311 + 0 289 109762 81 0 2 48 0 3 155 chain 5364 chr10 135534747 + 73864910 73865183 LTR1D 973 + 498 773 191378 47 24 24 11 44 45 20 106 107 21 chain 60744 chr10 135534747 + 73895934 73896817 LTR12 884 + 0 884 52451 25 1 0 5 6 5 30 1 42 140 0 25 24 5 21 19 24 8 21 1 0 13 43 0 23 17 0 25 5 0 45 1 0 99 2 6 308 chain 81683 chr10 135534747 + 73910417 73911360 L1PA6 6164 + 5214 6162 42897 140 0 4 494 1 3 42 3 2 263 chain 24748 chr10 135534747 + 73924874 73925173 AluSp 311 - 14 311 106186 123 1 0 14 1 0 160 chain 23129 chr10 135534747 + 73927674 73927951 AluSc8 310 + 8 287 115000 125 1 3 151 chain 23600 chr10 135534747 + 73954506 73954799 AluSp 311 - 17 311 112588 17 1 2 275 chain 18374 chr10 135534747 + 73955379 73955605 AluSp 311 + 73 295 131864 11 4 0 211 chain 6040 chr10 135534747 + 73970218 73970289 MSTB 430 + 359 430 184888 71 chain 9468 chr10 135534747 + 73977977 73978097 MER85 139 - 9 139 163229 29 2 12 89 chain 23034 chr10 135534747 + 73994925 73995216 AluSq 315 + 1 293 115476 133 2 1 143 0 2 13 chain 3942 chr10 135534747 + 74028628 74028675 L1MB5 1630 + 1549 1596 208233 47 chain 28065 chr10 135534747 + 74047863 74048173 AluYb8 318 - 13 318 92773 11 5 0 294 chain 24328 chr10 135534747 + 74048934 74049223 AluSp 311 + 0 286 108501 23 2 0 154 1 0 109 chain 25052 chr10 135534747 + 74056484 74056772 AluSp 311 + 9 299 104534 55 0 2 233 chain 119182 chr10 135534747 + 74060186 74061778 LTR12C 1709 + 0 1709 31342 90 0 3 177 23 40 66 16 4 84 0 1 185 0 119 56 1 0 12 1 0 237 1 7 30 1 0 5 4 2 106 11 4 126 6 4 82 0 1 63 1 0 57 10 9 49 18 17 31 1 0 42 chain 120123 chr10 135534747 + 74085530 74086936 LTR12C 1709 + 0 1709 31017 262 0 1 33 0 1 353 0 278 184 1 0 5 3 1 106 0 4 203 1 0 16 0 23 239 chain 4276 chr10 135534747 + 74151604 74151653 Tigger2b_Pri 1066 + 952 1001 203533 49 chain 327381 chr10 135534747 + 74155072 74158905 L1P2 5180 + 2 3848 12298 147 1 0 45 1 0 40 0 2 11 3 2 250 0 1 14 0 1 268 0 15 406 6 9 470 1 3 48 0 1 1063 7 0 379 2 0 136 0 1 208 1 0 326 chain 26790 chr10 135534747 + 74158906 74159222 L1PA6 6164 + 5841 6157 97012 316 chain 22136 chr10 135534747 + 74161930 74162312 LTR23 429 + 0 382 119642 12 16 26 8 9 0 13 5 7 27 30 26 153 1 2 108 chain 24888 chr10 135534747 + 74179825 74180118 AluSp 311 - 20 311 105418 159 2 0 132 chain 522178 chr10 135534747 + 74195179 74201303 L1PA6 6164 + 0 6147 4938 238 0 2 278 0 2 47 1 0 519 0 3 337 10 24 11 0 2 404 0 2 195 8 7 15 0 1 4 5 4 64 3 0 32 0 2 120 12 13 857 8 8 1171 0 4 84 1 0 229 1 0 222 0 1 923 1 2 101 9 1 37 1 3 149 0 2 27 chain 51358 chr10 135534747 + 74202840 74203403 L1PA3long 6157 - 710 1274 58057 56 0 1 507 chain 66875 chr10 135534747 + 74203407 74204140 L1PA3long 6157 + 5424 6157 49696 733 chain 25064 chr10 135534747 + 74247682 74247982 AluSp 311 + 10 311 104485 179 0 3 113 2 0 6 chain 17871 chr10 135534747 + 74263375 74263623 L1PA16 3655 + 1747 1996 133196 38 3 0 8 8 12 191 chain 28363 chr10 135534747 + 74276998 74277529 L1PB1 5432 + 4933 5427 91719 104 9 11 5 2 0 50 13 11 20 1 0 12 1 0 11 19 13 49 1 0 12 6 5 45 1 0 15 1 0 4 22 8 19 2 0 4 1 0 15 1 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 24488 chr10 135534747 + 74291205 74291497 AluSc5 308 + 10 302 107615 292 chain 24075 chr10 135534747 + 74291803 74292087 AluY 311 + 10 294 109897 284 chain 37011 chr10 135534747 + 74303631 74304125 LTR2 463 + 0 463 73504 10 26 0 200 28 23 230 chain 44892 chr10 135534747 + 74324901 74325399 L1PA4 6152 + 5645 6143 63185 498 chain 9064 chr10 135534747 + 74365434 74365556 MER2 342 + 195 318 165239 101 1 2 20 chain 24784 chr10 135534747 + 74375463 74375775 AluY 311 + 0 311 105971 16 3 0 116 0 1 13 9 10 155 chain 24638 chr10 135534747 + 74387547 74387827 AluY 311 + 0 289 106793 58 0 8 66 0 1 156 chain 4693 chr10 135534747 + 74388965 74389205 Charlie1b 519 - 269 519 198605 37 43 49 22 31 32 13 3 0 8 62 68 21 chain 5222 chr10 135534747 + 74405410 74405650 MER31B 477 - 189 471 192815 17 1 0 6 29 30 24 1 51 13 29 12 35 64 74 7 1 0 13 chain 27026 chr10 135534747 + 74422882 74423186 AluYk4 311 + 0 305 96201 10 0 1 294 chain 24364 chr10 135534747 + 74430715 74430997 AluYc3 301 - 14 301 108298 25 0 4 143 1 2 113 chain 141708 chr10 135534747 + 74433808 74435386 L1PA5 6144 - 16 1600 25867 133 0 1 719 0 4 244 0 1 482 chain 37111 chr10 135534747 + 74518844 74519304 LTR2 463 - 0 463 73360 88 18 20 208 0 1 146 chain 39207 chr10 135534747 + 74530814 74531297 L1PA7 6471 - 7 498 70447 104 2 1 91 0 8 162 0 1 124 chain 10076 chr10 135534747 + 74531425 74531583 L1PA8 5853 - 0 156 160190 88 9 8 15 7 6 39 chain 4460 chr10 135534747 + 74552369 74552429 LTR39 781 - 679 735 201233 41 4 0 15 chain 17444 chr10 135534747 + 74582622 74583033 L1MB8 1703 + 1113 1519 134392 34 132 130 146 2 1 10 19 18 60 1 0 7 chain 9211 chr10 135534747 + 74585843 74585994 MER5A1 166 - 1 147 164500 22 1 0 64 19 15 45 chain 89168 chr10 135534747 + 74641705 74642751 MER11C 1089 + 0 1063 39942 246 0 9 58 0 4 68 1 0 303 0 4 45 0 1 325 chain 14680 chr10 135534747 + 74642780 74643094 L1MB8 1703 + 1409 1662 142327 12 1 0 13 1 0 26 0 1 102 94 39 24 5 0 36 chain 9104 chr10 135534747 + 74648675 74648825 MER30 238 - 8 176 165051 21 13 10 70 3 0 6 5 29 32 chain 37751 chr10 135534747 + 74663658 74664122 LTR2 463 + 0 463 72487 210 23 23 32 1 0 198 chain 4109 chr10 135534747 + 74708384 74708433 MER58B 340 + 150 199 205789 49 chain 219877 chr10 135534747 + 74721561 74724961 L1MA2 4263 - 833 4007 17887 63 0 14 450 6 7 65 1 0 187 2 0 25 0 5 57 5 9 306 0 7 6 25 11 105 5 31 116 7 11 14 19 4 161 0 2 192 0 3 13 0 2 14 0 8 7 7 1 79 0 8 6 0 4 20 0 3 7 2 0 7 0 4 7 0 1 8 6 1 13 0 1 31 11 14 93 0 3 66 0 1 41 0 2 26 0 3 11 0 1 9 0 1 5 0 3 249 15 7 158 306 0 155 15 22 42 0 3 46 0 3 37 1 0 29 0 3 12 0 4 29 chain 3456 chr10 135534747 + 74732142 74732178 tRNA-Ile-ATT 40 - 4 40 216083 36 chain 520611 chr10 135534747 + 74749331 74755786 L1PA6 6164 + 0 6161 5094 133 0 14 90 0 2 9 0 3 21 6 5 8 0 1 132 1 0 7 1 2 91 0 2 47 1 0 87 0 1 48 0 1 742 1 0 121 12 15 271 0 4 445 0 1 31 27 5 120 4 0 248 0 3 507 6 0 168 0 1 253 1 0 209 305 0 224 3 5 283 0 12 125 0 2 1188 4 0 323 1 0 151 chain 514149 chr10 135534747 + 74781346 74787363 L1PA6 6164 + 68 6162 5763 499 1 0 83 4 5 132 0 17 124 0 4 261 0 2 333 2 0 105 0 1 598 0 14 79 6 0 253 1 5 67 4 0 22 2 0 332 0 2 183 0 1 244 0 4 68 1 5 238 0 17 202 5 7 97 3 5 285 0 4 141 0 4 766 0 1 15 0 4 15 0 4 846 chain 28895 chr10 135534747 + 74798380 74798683 AluYa5 310 - 7 310 89477 303 chain 23513 chr10 135534747 + 74800234 74800519 AluSc 308 - 10 298 113055 27 0 1 116 0 2 142 chain 21086 chr10 135534747 + 74808621 74808893 AluY 311 + 11 298 123588 121 0 1 74 13 30 46 3 0 15 chain 14880 chr10 135534747 + 74841802 74842036 MER47A 366 + 102 365 141686 84 0 2 40 5 0 38 10 39 31 7 10 19 chain 7842 chr10 135534747 + 74845454 74845570 L1MB7 1623 + 1055 1187 172063 37 7 23 72 chain 25868 chr10 135534747 + 74864887 74865191 AluY 311 + 0 298 100576 132 0 1 36 7 0 129 chain 46422 chr10 135534747 + 74868947 74869736 LTR12 884 + 5 751 61661 20 1 0 37 132 0 142 18 2 16 1 3 111 1 2 39 2 0 62 0 1 136 9 113 62 chain 9297 chr10 135534747 + 74869005 74869137 LTR12 884 + 103 235 135840 132 chain 24632 chr10 135534747 + 74871826 74872120 AluSp 311 + 0 291 106814 120 3 0 171 chain 11005 chr10 135534747 + 74904379 74904512 MER41B 635 + 481 615 156190 30 0 1 103 chain 143889 chr10 135534747 + 74909669 74911295 L1PA4 6152 + 4528 6152 25499 107 1 0 807 4 3 485 1 0 107 1 2 113 chain 24933 chr10 135534747 + 74917205 74917493 AluSp 311 + 11 295 105142 117 4 0 167 chain 25634 chr10 135534747 + 74919400 74919697 AluSp 311 - 9 311 101568 25 0 2 181 0 3 91 chain 107718 chr10 135534747 + 74925408 74927125 L1MA3 4352 - 20 1684 34795 4 1 0 14 1 0 23 22 20 12 3 1 67 55 1 14 4 0 6 0 3 33 3 7 13 0 3 7 38 15 21 1 0 109 22 14 39 3 1 50 0 4 4 0 1 179 1 0 50 16 29 147 0 1 21 21 22 340 11 10 25 6 7 125 0 15 150 2 0 6 6 9 42 chain 14998 chr10 135534747 + 74933469 74933674 Tigger2b 204 - 0 204 141326 44 0 2 16 2 0 27 2 0 107 0 1 7 chain 36029 chr10 135534747 + 74935641 74936162 MER1A 529 - 0 529 74862 63 15 11 244 1 13 103 33 33 62 chain 20546 chr10 135534747 + 74941680 74941956 L1M1 2793 - 98 368 125481 9 1 0 15 1 0 25 3 1 17 1 0 194 1 0 9 chain 16941 chr10 135534747 + 74948279 74948502 AluSg7 307 + 81 300 135748 146 14 10 63 chain 11150 chr10 135534747 + 74972342 74972524 L1PB4 2604 - 330 515 155628 23 16 20 108 5 4 30 chain 24124 chr10 135534747 + 75009690 75009992 AluY 311 + 8 298 109619 32 1 0 135 12 0 102 0 1 20 chain 78375 chr10 135534747 + 75017951 75019034 MER11B 1079 + 0 1079 44333 354 3 6 65 12 11 139 22 20 146 10 0 29 2 4 46 5 6 41 0 1 16 4 5 27 1 3 130 2 1 29 chain 5357 chr10 135534747 + 75038833 75038896 U6 107 + 14 77 191460 63 chain 36557 chr10 135534747 + 75046402 75046901 MER9a3 513 - 8 513 74162 71 0 1 15 8 10 152 1 0 78 0 1 33 1 0 33 13 14 10 0 1 66 0 2 18 chain 25486 chr10 135534747 + 75071770 75072122 L1PA8 5853 + 5506 5853 102288 41 0 2 13 1 0 18 0 1 27 2 0 67 5 4 32 1 0 8 1 0 21 2 1 18 2 1 93 chain 562298 chr10 135534747 + 75083092 75089258 L1PA3long 6157 + 0 6157 289 6 2 0 294 1 0 263 7 0 2226 0 1 3367 chain 25191 chr10 135534747 + 75109019 75109327 AluY 311 + 4 309 103790 124 4 1 180 chain 9732 chr10 135534747 + 75115545 75115692 MER1A 529 + 371 529 161930 73 16 27 58 chain 19145 chr10 135534747 + 75133029 75133275 AluSc 308 + 38 283 129691 93 6 5 147 chain 257809 chr10 135534747 + 75151712 75154612 L1PA5 6144 + 3235 6128 15821 14 1 0 5 0 1 427 1 0 816 6 0 796 1 0 516 0 1 317 chain 4548 chr10 135534747 + 75161566 75161637 MLT1A1 405 + 246 326 200245 32 8 17 31 chain 107877 chr10 135534747 + 75168595 75170217 L1PB3 3668 + 1511 3149 34762 96 0 3 41 0 1 4 10 11 57 5 8 119 11 13 97 0 3 150 12 0 87 1 5 165 7 8 29 0 1 35 0 1 200 0 3 19 17 16 16 6 7 42 24 29 211 5 7 11 20 19 32 0 3 22 18 12 35 0 2 18 chain 29313 chr10 135534747 + 75177607 75177918 AluYa5 310 + 0 310 87488 97 1 0 213 chain 25603 chr10 135534747 + 75215337 75215627 AluYf4 310 - 21 310 101714 82 0 1 88 2 0 118 chain 3525 chr10 135534747 + 75281055 75281093 tRNA-Ile-ATA 38 + 0 38 214976 38 chain 4668 chr10 135534747 + 75288849 75288901 U6 107 - 41 93 198882 52 chain 129935 chr10 135534747 + 75307134 75308631 L1PA6 6164 + 4647 6154 28099 254 0 1 124 6 7 282 0 1 260 0 1 255 1 2 252 0 5 63 chain 24418 chr10 135534747 + 75316093 75316399 AluSg7 307 - 1 305 107980 55 8 5 114 0 1 129 chain 7755 chr10 135534747 + 75340643 75340740 Tigger3a 397 + 206 303 172576 97 chain 4659 chr10 135534747 + 75341412 75341483 Charlie23a 306 - 86 158 198971 17 1 2 53 chain 23689 chr10 135534747 + 75343876 75344157 AluSc5 308 + 11 292 112092 281 chain 26234 chr10 135534747 + 75386540 75386837 AluSc5 308 + 0 298 99082 39 0 1 258 chain 2977 chr10 135534747 + 75396144 75396203 MER53 195 + 0 61 225490 23 1 2 11 5 6 19 chain 27747 chr10 135534747 + 75422180 75422515 LTR14A 344 - 0 344 93878 41 0 1 57 0 1 4 1 0 189 0 8 43 chain 12855 chr10 135534747 + 75430464 75430670 LTR47A 437 - 13 218 148819 117 15 21 32 6 0 31 1 0 4 chain 49591 chr10 135534747 + 75444690 75445311 L1PB 1623 - 325 944 59328 357 2 1 158 1 0 103 chain 16240 chr10 135534747 + 75446451 75446869 L1PB1 5432 + 5039 5418 137651 64 0 3 5 84 62 27 0 1 16 20 20 43 1 0 16 1 0 4 19 8 19 2 0 5 7 6 8 2 0 24 1 0 21 1 0 13 2 1 13 chain 142448 chr10 135534747 + 75448764 75450382 SVA_D 2077 + 29 2077 25735 11 1 26 426 1 0 233 0 3 33 3 0 143 0 182 133 0 226 384 1 0 230 1 0 18 chain 11840 chr10 135534747 + 75458861 75459066 THE1D 372 - 12 227 152871 69 0 2 50 43 51 43 chain 54832 chr10 135534747 + 75474774 75475434 SVA_B 1603 - 0 734 55814 291 0 2 259 10 8 41 8 44 36 0 38 15 chain 25059 chr10 135534747 + 75496445 75496754 AluY 311 + 0 303 104510 123 1 0 10 15 10 160 chain 17491 chr10 135534747 + 75497428 75497650 LTR12C 1709 + 1254 1709 134289 172 0 233 50 chain 18057 chr10 135534747 + 75507107 75507400 AluSg7 307 - 11 298 132707 5 3 0 7 6 0 47 10 14 70 15 16 11 1 0 16 2 1 100 chain 10798 chr10 135534747 + 75513655 75513831 MER30 238 + 38 238 156998 73 23 44 41 7 10 32 chain 4549 chr10 135534747 + 75513831 75513880 MER2 342 + 164 213 200222 49 chain 25882 chr10 135534747 + 75546701 75547000 AluSp 311 - 12 310 100517 171 1 0 127 chain 83143 chr10 135534747 + 75690443 75691398 LTR13A 966 - 0 959 42278 55 8 12 892 chain 15221 chr10 135534747 + 75698894 75699164 MER4B 649 + 386 641 140714 23 35 21 134 1 0 4 11 12 53 1 0 8 chain 9640 chr10 135534747 + 75704876 75705011 LTR12C 1709 + 1018 1202 162029 50 7 56 78 chain 12076 chr10 135534747 + 75705011 75705291 LTR12C 1709 + 676 877 151881 73 1 16 8 15 0 59 6 5 20 80 2 18 chain 21539 chr10 135534747 + 75706817 75707102 AluSg7 307 + 0 284 122004 51 15 13 68 1 0 31 0 2 119 chain 12522 chr10 135534747 + 75776456 75776795 L1MB3 1562 - 7 290 150149 22 10 9 33 74 70 10 0 3 32 0 9 16 63 0 79 chain 28884 chr10 135534747 + 75776804 75777104 AluYa5 310 - 10 310 89521 300 chain 14459 chr10 135534747 + 75779008 75779207 L1PA8 5853 - 0 195 143019 93 1 0 19 2 1 52 2 1 8 2 1 20 chain 10408 chr10 135534747 + 75790546 75790673 MER85 139 + 1 139 158652 98 0 11 29 chain 7488 chr10 135534747 + 75823073 75823238 MLT1D 503 - 33 222 174219 65 61 85 39 chain 22363 chr10 135534747 + 75861300 75861541 AluYb8 318 - 6 245 118660 186 2 0 53 chain 7074 chr10 135534747 + 75886856 75886937 MER2 342 + 197 278 176921 81 chain 3785 chr10 135534747 + 75934803 75934869 MER33 330 - 13 88 210590 13 9 19 37 1 0 6 chain 557904 chr10 135534747 + 75976642 75982779 L1PA3long 6157 + 4 6157 509 1186 0 3 417 0 1 2209 0 1 1320 1 11 154 0 1 850 chain 31716 chr10 135534747 + 76031172 76031526 L1PA3long 6157 - 0 354 81307 119 0 1 14 1 0 220 chain 9795 chr10 135534747 + 76088716 76088824 L1PA3long 6157 + 6049 6157 161621 108 chain 24016 chr10 135534747 + 76106603 76106893 AluY 311 + 20 311 110234 16 3 0 96 0 1 17 0 3 158 chain 450935 chr10 135534747 + 76107505 76113331 L1PA8 5853 + 52 5853 8741 20 2 0 10 1 0 12 50 14 194 12 0 60 13 12 458 28 53 269 1 0 872 2 0 114 0 4 126 1 5 77 7 0 303 19 21 206 1 0 222 13 1 354 0 1 50 7 14 119 0 1 56 0 1 82 0 1 207 0 2 110 0 1 111 11 10 104 25 16 120 0 1 227 0 1 282 0 1 32 0 2 52 6 10 11 0 2 357 2 3 18 0 5 82 0 1 12 1 0 46 2 0 52 30 28 53 1 0 17 1 0 93 chain 30060 chr10 135534747 + 76115760 76116075 AluYb8 318 - 3 318 84629 315 chain 198359 chr10 135534747 + 76161109 76163619 L1P2 5180 - 2669 5167 19330 17 32 0 175 3 0 110 0 2 198 0 1 568 3 0 433 0 1 48 0 25 118 0 7 15 1 0 6 1 0 272 1 0 8 1 0 102 31 27 131 1 0 96 2 1 137 chain 8512 chr10 135534747 + 76165226 76165328 L1PA4 6152 - 0 98 168232 6 4 0 92 chain 20043 chr10 135534747 + 76172243 76172534 Tigger1 2417 - 873 1171 127003 34 7 11 20 16 19 214 chain 24648 chr10 135534747 + 76184014 76184322 AluSp 311 + 0 311 106728 37 1 5 194 2 1 74 chain 14861 chr10 135534747 + 76186553 76186765 L1PA7 6471 - 2 215 141750 102 6 7 38 0 7 7 8 1 51 chain 6282 chr10 135534747 + 76196141 76196214 Tigger2a 444 - 229 302 182939 73 chain 21649 chr10 135534747 + 76215191 76215755 L1P2 5180 - 3244 3521 121439 75 284 0 178 3 0 24 chain 91020 chr10 135534747 + 76215755 76217169 L1P3 4156 + 2762 3886 39283 395 321 30 575 0 1 123 chain 52199 chr10 135534747 + 76217169 76217781 L1PA7 6471 + 5852 6465 57500 158 0 2 446 1 0 7 chain 4144 chr10 135534747 + 76231134 76231191 L1MB2 1706 - 1338 1393 205323 31 2 0 24 chain 17762 chr10 135534747 + 76258530 76258723 L1PA4 6152 + 5706 5899 133538 193 chain 3171 chr10 135534747 + 76288366 76288407 L1MB4 1306 + 619 660 221535 41 chain 10482 chr10 135534747 + 76308179 76308339 MER53 195 + 3 195 158322 57 16 48 87 chain 8537 chr10 135534747 + 76311151 76311249 HY3 101 + 2 100 168083 98 chain 25611 chr10 135534747 + 76323654 76323941 L1PA3long 6157 - 0 288 101676 4 0 1 283 chain 15736 chr10 135534747 + 76328205 76328399 MER41A 554 - 0 194 139156 194 chain 276586 chr10 135534747 + 76328544 76331636 L1PA4 6152 - 9 3096 14840 832 4 8 858 16 0 89 0 2 144 0 1 912 0 4 237 chain 195757 chr10 135534747 + 76331637 76333910 L1P1 4361 - 2094 4360 19522 668 0 1 891 14 7 126 1 0 573 chain 21638 chr10 135534747 + 76338746 76339006 AluSz6 309 + 37 297 121622 260 chain 25622 chr10 135534747 + 76339886 76340545 THE1B 368 + 0 368 101613 40 0 15 20 0 4 93 1 0 2 306 0 26 2 0 94 2 1 73 chain 5037 chr10 135534747 + 76352544 76352760 MER3 215 - 23 199 194753 26 3 9 32 126 80 29 chain 16055 chr10 135534747 + 76353582 76353775 L1PA7 6471 - 376 569 138202 193 chain 25771 chr10 135534747 + 76353776 76354101 L1PA7 6471 + 6142 6467 101006 179 0 1 134 1 0 11 chain 25843 chr10 135534747 + 76355470 76355774 AluSq2 311 + 0 303 100683 17 2 0 116 0 1 169 chain 534330 chr10 135534747 + 76363018 76369455 L1PA7 6471 - 3 6471 3674 12 1 0 131 6 5 185 1 2 79 1 9 427 2 0 4 0 1 273 10 9 116 8 7 17 1 0 148 1 0 83 0 5 97 0 4 77 0 3 777 0 2 509 0 2 202 5 11 325 0 1 40 12 16 391 0 1 4 1 0 39 1 2 671 0 1 100 16 17 449 3 7 233 0 6 87 0 2 195 22 8 266 1 2 136 1 0 74 0 1 197 chain 3571 chr10 135534747 + 76432666 76432708 MIR 256 - 192 234 214114 42 chain 23350 chr10 135534747 + 76448738 76449010 AluY 311 + 10 286 113917 43 0 3 76 0 1 153 chain 6823 chr10 135534747 + 76499295 76499378 MLT1E3 631 + 548 631 178775 83 chain 32204 chr10 135534747 + 76528486 76528915 MER57A1 433 - 0 433 80518 14 3 0 7 4 10 119 0 1 282 chain 23678 chr10 135534747 + 76529565 76529855 AluSp 311 - 18 301 112165 165 7 0 118 chain 37014 chr10 135534747 + 76533410 76533866 MER4A1 472 - 0 472 73500 29 1 3 198 5 19 223 chain 117690 chr10 135534747 + 76533875 76535403 MER4-int 2692 - 0 1518 31896 122 6 0 13 1 0 163 5 0 110 0 2 11 2 0 40 4 0 216 8 5 58 0 2 454 5 4 15 1 3 21 3 7 35 0 1 88 0 1 85 6 1 30 0 5 26 chain 17888 chr10 135534747 + 76535755 76536016 MER41C 542 + 266 542 133144 43 1 20 6 0 2 50 17 11 144 chain 38419 chr10 135534747 + 76542369 76542870 MER41C 542 + 9 542 71551 40 0 1 168 0 10 82 5 26 206 chain 36896 chr10 135534747 + 76543780 76544257 MER4A1 472 - 0 472 73666 171 1 0 67 13 8 5 0 1 220 chain 4701 chr10 135534747 + 76544257 76544314 MER21B 843 + 25 82 198527 57 chain 24510 chr10 135534747 + 76547780 76548089 AluY 311 + 0 304 107490 37 7 0 93 1 2 116 0 1 55 chain 18368 chr10 135534747 + 76564613 76564846 AluSp 311 + 57 288 131882 77 1 0 34 2 1 119 chain 22586 chr10 135534747 + 76570533 76570826 MER4E1 777 - 25 312 117655 11 0 4 199 11 1 72 chain 10741 chr10 135534747 + 76574952 76575103 MLT1A1 405 - 0 159 157243 15 1 0 95 8 17 32 chain 5628 chr10 135534747 + 76575923 76576005 Tigger7 736 + 37 151 188794 21 1 2 42 0 31 18 chain 8843 chr10 135534747 + 76608299 76608425 MER30 238 + 112 238 166414 7 4 0 5 2 0 28 0 6 80 chain 3627 chr10 135534747 + 76634799 76634846 L1MC1 2226 - 42 88 213200 32 1 0 14 chain 24476 chr10 135534747 + 76756250 76756547 AluSc8 310 + 4 305 107671 127 10 14 160 chain 3008 chr10 135534747 + 76838596 76838630 MER33 330 - 89 123 224877 34 chain 4741 chr10 135534747 + 76843555 76843608 MER53 195 + 142 195 198006 53 chain 2997 chr10 135534747 + 76848086 76848120 MLT1H1 527 - 14 48 225099 34 chain 4374 chr10 135534747 + 76851323 76851377 L1MD3 1191 - 131 185 202270 54 chain 6037 chr10 135534747 + 76861272 76861398 MIRb 242 - 22 151 184914 13 16 23 24 15 11 58 chain 26512 chr10 135534747 + 76875419 76875717 AluY 311 + 3 301 98003 298 chain 15880 chr10 135534747 + 76904042 76904363 L1MB3 1562 - 30 321 138705 8 1 0 33 100 72 68 1 0 110 chain 15445 chr10 135534747 + 76956655 76956854 PABL_A 660 - 0 205 140068 99 6 12 94 chain 2838 chr10 135534747 + 76969497 76969527 LTR54 533 - 372 402 228102 30 chain 10815 chr10 135534747 + 77015574 77015735 THE1B 368 - 206 368 156915 35 22 23 104 chain 11146 chr10 135534747 + 77039436 77039567 MLT1A0 366 - 0 131 155649 131 chain 90804 chr10 135534747 + 77059371 77060436 MER11C 1089 - 16 1089 39355 335 0 1 45 0 4 302 1 0 69 0 4 313 chain 44965 chr10 135534747 + 77067888 77068573 Tigger1 2417 + 1170 1790 63100 54 59 0 157 9 12 140 1 2 121 12 2 132 chain 33940 chr10 135534747 + 77070746 77071194 MLT2A2 560 - 0 556 77712 145 5 114 121 1 0 176 chain 16384 chr10 135534747 + 77072558 77072907 THE1B 368 + 0 368 137246 15 2 0 33 66 83 38 1 0 21 17 24 18 19 17 119 chain 25559 chr10 135534747 + 77088499 77088795 AluSq10 312 - 7 303 101940 296 chain 129257 chr10 135534747 + 77092229 77093949 SVA_F 1814 - 0 1479 28254 637 129 0 211 179 18 67 0 1 25 1 0 8 0 49 463 chain 3699 chr10 135534747 + 77092866 77092905 SVA_F 1814 - 813 852 148632 39 chain 2579 chr10 135534747 + 77092907 77092957 SVA_F 1814 - 727 777 140572 50 chain 1549 chr10 135534747 + 77092957 77092983 SVA_F 1814 - 601 627 164104 26 chain 5513 chr10 135534747 + 77093250 77093365 SVA_F 1814 - 540 655 130959 115 chain 3477 chr10 135534747 + 77206425 77206468 MLT1I 406 + 355 398 215701 43 chain 11923 chr10 135534747 + 77236504 77236656 MLT1B 390 - 0 152 152502 152 chain 518982 chr10 135534747 + 77275463 77281595 L1PA6 6164 - 2 6158 5272 8 2 0 160 4 2 512 0 1 168 0 3 8 0 1 255 0 1 1105 5 8 61 2 0 172 16 14 189 0 2 525 2 0 109 0 1 271 0 4 94 0 15 72 0 4 63 0 1 279 0 1 72 0 1 429 9 10 38 0 1 209 2 0 357 2 0 272 2 0 658 chain 31171 chr10 135534747 + 77311095 77311471 L1PA7 6471 - 2 379 82220 153 0 1 223 chain 558314 chr10 135534747 + 77318291 77324436 L1PA3long 6157 - 0 6151 470 2887 0 4 1058 0 2 2200 chain 23962 chr10 135534747 + 77335011 77335337 MSTA-int 1630 - 0 325 110557 115 1 0 62 8 9 94 1 0 45 chain 389276 chr10 135534747 + 77335337 77340857 L1P2 5180 + 4 5174 10471 146 1 0 88 5 14 60 252 49 30 16 17 4 1 0 34 19 0 59 2 0 7 140 53 174 50 12 36 0 15 74 21 25 143 0 1 4 1 0 194 1 0 203 6 5 54 5 6 111 3 5 700 32 17 49 0 1 181 0 4 147 0 1 59 0 4 80 0 5 52 26 0 215 5 0 41 1 0 338 0 1 798 0 1 98 0 1 37 0 3 205 1 0 424 1 0 47 1 0 38 chain 27040 chr10 135534747 + 77341352 77341678 L1PA7 6471 + 6117 6446 96144 20 1 0 58 1 5 246 chain 16266 chr10 135534747 + 77345689 77346030 L1MB1 2102 - 103 430 137557 57 2 0 18 29 26 23 1 0 9 9 13 63 14 12 15 19 11 5 1 0 7 1 0 68 chain 3014 chr10 135534747 + 77359450 77359577 MER3 215 - 6 143 224744 28 81 91 18 chain 22113 chr10 135534747 + 77380619 77381081 L1PB1 5432 - 10 407 119730 18 1 0 12 1 0 22 1 0 26 2 0 12 9 6 18 23 13 12 2 1 45 1 0 16 2 1 52 2 0 9 11 7 8 1 0 6 1 0 24 47 11 78 chain 28609 chr10 135534747 + 77431203 77431558 L1PA7 6471 + 6119 6468 90699 201 6 5 136 5 0 7 chain 127153 chr10 135534747 + 77509386 77511109 SVA_B 1603 - 0 1602 28779 384 3 4 68 1 0 171 1 0 4 0 3 7 7 3 39 0 118 151 238 0 604 12 5 15 0 8 18 chain 4041 chr10 135534747 + 77510222 77510360 SVA_B 1603 - 872 931 168329 18 88 9 32 chain 8400 chr10 135534747 + 77510360 77510460 SVA_B 1603 - 968 1068 133380 100 chain 62598 chr10 135534747 + 77526398 77527185 L1PA8 5853 - 0 781 51632 93 1 0 19 2 1 45 14 13 74 2 0 44 1 0 492 chain 24648 chr10 135534747 + 77547509 77547809 AluY 311 + 4 305 106727 128 0 1 172 chain 25228 chr10 135534747 + 77590501 77590806 THE1B-int 1605 - 5 310 103602 305 chain 3567 chr10 135534747 + 77593224 77593269 MLT1D 503 - 4 49 214172 45 chain 158187 chr10 135534747 + 77614338 77616121 L1PA4 6152 - 11 1799 23561 190 0 1 648 0 4 945 chain 60644 chr10 135534747 + 77616121 77616804 L1PA4 6152 + 3669 4353 52454 230 0 1 453 chain 33035 chr10 135534747 + 77641103 77641644 MER51A 677 + 0 661 79162 95 1 2 39 7 0 7 8 0 33 17 0 23 10 0 19 0 163 115 4 3 14 1 0 20 14 15 41 1 0 72 chain 5324 chr10 135534747 + 77647307 77647466 MER58A 224 + 49 210 191785 45 81 83 33 chain 29027 chr10 135534747 + 77653813 77654311 L1PB1 5432 - 14 480 88863 14 1 0 13 1 0 21 1 0 24 2 0 14 6 4 20 19 8 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 10 5 1 9 1 0 9 1 0 23 3 0 10 1 2 151 chain 18167 chr10 135534747 + 77718478 77718849 THE1B 368 - 0 368 132416 46 17 16 63 84 77 24 6 10 16 4 5 111 chain 6333 chr10 135534747 + 77737595 77737671 MIR 256 + 54 130 182517 76 chain 2952 chr10 135534747 + 77773577 77773709 LTR16C 481 + 14 204 226052 24 84 142 24 chain 2746 chr10 135534747 + 77803064 77803126 Arthur1B 1073 - 739 804 229545 17 18 21 27 chain 8203 chr10 135534747 + 77867532 77867635 L1PA8 5853 - 4 106 169934 89 1 0 13 chain 28131 chr10 135534747 + 77870265 77870613 THE1A 353 + 6 353 92536 101 2 1 245 chain 544722 chr10 135534747 + 77902466 77908595 L1PA4 6152 - 16 6149 2106 1193 0 1 1129 0 1 132 0 2 1416 1 3 54 0 4 359 0 1 1261 1 0 120 6 0 457 chain 16024 chr10 135534747 + 77917509 77917787 Tigger3a 397 - 13 344 138298 30 9 4 34 12 11 145 26 85 22 chain 32117 chr10 135534747 + 77927200 77927789 L1PREC2 3366 - 360 910 80655 33 39 22 19 12 11 11 11 6 16 31 23 12 10 6 40 8 7 26 1 0 22 2 0 296 chain 379714 chr10 135534747 + 77978825 77983034 L1PA3long 6157 + 1945 6157 10762 381 1 0 364 1 0 525 2 0 168 2 1 973 0 4 1023 1 0 112 0 3 97 1 3 558 chain 33724 chr10 135534747 + 77985492 77985876 L1PA5 6144 - 6 390 78055 384 chain 11101 chr10 135534747 + 77985876 77986057 THE1D 372 - 40 225 155803 84 22 28 27 2 1 18 1 0 27 chain 6436 chr10 135534747 + 78000011 78000116 L1PB1 5432 + 5134 5231 181732 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 10 chain 37333 chr10 135534747 + 78000235 78001004 L1PB1 5432 + 4814 5418 73047 85 0 2 146 1 2 54 149 11 20 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 16 2 1 41 2 1 13 26 15 19 8 5 11 2 0 27 1 0 21 1 0 13 1 0 14 chain 21069 chr10 135534747 + 78001795 78002055 7SLRNA 320 - 37 297 123667 260 chain 30427 chr10 135534747 + 78010991 78011309 AluYb8 318 - 0 318 83631 318 chain 2311 chr10 135534747 + 78016304 78016329 MER97a 834 + 45 70 235317 25 chain 3507 chr10 135534747 + 78020586 78020624 U6 107 - 32 70 215238 38 chain 7744 chr10 135534747 + 78048335 78048426 LTR54B 464 - 373 464 172634 91 chain 30091 chr10 135534747 + 78143169 78143487 AluYb8 318 - 0 318 84527 318 chain 5105 chr10 135534747 + 78147447 78147510 MER41B 635 - 88 152 194044 38 0 1 25 chain 218135 chr10 135534747 + 78185367 78187855 L1PA5 6144 - 5 2492 17997 327 1 2 115 1 0 172 0 1 658 1 0 327 6 7 855 2 0 23 chain 12644 chr10 135534747 + 78225455 78225724 MLT1B 390 - 41 287 149661 66 82 56 46 10 13 65 chain 325704 chr10 135534747 + 78235129 78238810 L1PA5 6144 + 2452 6138 12354 2753 0 1 91 0 4 124 0 1 564 1 0 148 chain 10170 chr10 135534747 + 78249620 78249755 THE1D 372 + 185 338 159755 6 0 2 26 3 19 100 chain 48932 chr10 135534747 + 78276104 78276654 L1PA4 6152 - 1 553 59787 251 0 2 299 chain 4639 chr10 135534747 + 78286508 78286557 L1PA2 6032 - 205 254 199199 49 chain 15613 chr10 135534747 + 78286557 78286735 L1PA2 6032 + 5837 6020 139538 58 0 1 78 0 4 42 chain 19722 chr10 135534747 + 78291801 78292030 L1PA7 6471 - 16 245 128034 229 chain 459767 chr10 135534747 + 78346599 78351510 L1HS 6032 + 1119 6030 8409 4911 chain 4016 chr10 135534747 + 78352736 78352785 L1PBa 3878 + 3605 3654 207133 49 chain 113020 chr10 135534747 + 78361458 78362742 L1PA5 6144 - 834 2119 33371 1072 8 9 204 chain 72577 chr10 135534747 + 78362742 78363582 L1PA5 6144 + 5310 6144 47187 360 4 0 462 3 1 11 chain 533391 chr10 135534747 + 78368277 78374431 L1PA5 6144 + 0 6141 3794 473 14 15 1623 25 0 975 0 7 366 0 1 418 0 1 2090 0 2 170 chain 106548 chr10 135534747 + 78379083 78380749 THE1B-int 1605 - 8 1605 35109 431 24 28 103 7 9 5 2 0 257 47 56 141 11 48 67 37 22 147 9 11 155 0 3 12 111 0 82 6 8 12 chain 55441 chr10 135534747 + 78420471 78421073 L1PA3long 6157 + 5540 6142 55446 602 chain 24629 chr10 135534747 + 78450573 78450908 L1PA6 6164 - 2 322 106834 144 13 15 29 17 0 132 chain 79195 chr10 135534747 + 78450908 78451978 MER11A 1151 - 0 1151 43947 167 0 1 16 1 0 30 1 2 14 0 1 22 5 12 24 44 27 150 0 1 140 5 6 93 4 5 146 4 0 66 1 0 52 0 91 85 chain 162041 chr10 135534747 + 78465719 78467552 L1PA3long 6157 + 4355 6157 23059 1490 40 9 303 chain 2461 chr10 135534747 + 78520136 78520367 L2a 937 + 296 519 233565 25 4 0 7 177 173 18 chain 41072 chr10 135534747 + 78542204 78542935 L1PREC2 3366 + 2388 3075 67808 132 0 1 231 2 0 54 2 1 43 1 0 3 3 0 14 74 59 25 4 1 11 22 8 24 17 15 38 2 0 11 1 0 4 1 0 12 chain 21123 chr10 135534747 + 78548542 78548799 L1PA7 6471 - 15 287 123478 116 0 15 141 chain 23136 chr10 135534747 + 78550735 78551061 L1PA10 4194 - 33 355 114962 11 1 0 7 1 0 26 4 1 27 1 2 45 1 0 4 0 1 198 chain 29278 chr10 135534747 + 78563039 78563352 AluYb8 318 + 0 312 87657 132 1 0 180 chain 171592 chr10 135534747 + 78573720 78575897 L1P1 4361 - 2342 4356 21870 645 0 2 61 173 3 75 7 9 187 0 2 189 5 6 835 chain 13382 chr10 135534747 + 78574446 78574599 L1P1 4361 - 3696 3849 146775 153 chain 124764 chr10 135534747 + 78575897 78577327 L1PA4 6152 + 4726 6151 29459 20 0 1 1005 7 0 393 0 1 5 chain 38893 chr10 135534747 + 78577978 78578418 LTR7Y 441 + 0 441 70875 428 0 1 12 chain 259616 chr10 135534747 + 78578478 78582021 HERVH-int 3825 + 10 3474 15725 367 0 1 111 2 0 11 37 31 39 1 0 10 321 0 24 6 18 9 3 0 25 1 0 42 2 1 57 0 1 6 0 2 14 0 3 903 4 31 403 10 11 309 8 7 28 4 0 618 0 3 19 42 253 107 chain 2761 chr10 135534747 + 78579095 78579125 HERVH-int 3825 + 436 466 229321 30 chain 4285 chr10 135534747 + 78579159 78579207 HERVH-int 3825 + 436 484 203418 48 chain 4776 chr10 135534747 + 78579223 78579276 HERVH-int 3825 + 436 489 197634 53 chain 3565 chr10 135534747 + 78579326 78579376 HERVH-int 3825 + 531 580 214238 39 2 1 9 chain 38735 chr10 135534747 + 78583053 78583480 LTR7Y 441 + 0 427 71098 427 chain 35524 chr10 135534747 + 78583494 78584004 L1PA8 5853 + 5348 5853 75513 216 1 0 44 2 0 69 30 29 29 12 11 107 chain 70767 chr10 135534747 + 78592261 78593029 L1HS 6032 - 2 770 48029 768 chain 110092 chr10 135534747 + 78596798 78598102 L1PA6 6164 + 4858 6162 34186 180 0 1 273 0 4 235 0 3 85 1 2 262 8 0 72 1 2 5 1 0 169 1 0 11 chain 536544 chr10 135534747 + 78605968 78612089 L1PA3long 6157 + 4 6157 3371 549 1 0 151 2 9 76 1 0 4 0 1 29 35 18 872 0 1 1457 4 0 12 0 1 332 1 0 4 0 1 829 11 0 250 0 1 699 1 0 250 0 56 551 chain 34671 chr10 135534747 + 78654649 78655110 LTR2 463 + 0 463 76662 138 0 7 6 6 0 199 24 25 88 chain 4625 chr10 135534747 + 78667612 78667691 MER45A 178 + 73 178 199359 41 15 41 23 chain 43965 chr10 135534747 + 78678252 78679054 L1PB1 5432 + 4719 5420 64245 36 0 1 347 3 2 11 117 42 11 3 1 50 2 1 16 1 0 44 41 27 19 3 0 19 2 0 26 1 0 19 1 0 13 1 0 16 chain 30154 chr10 135534747 + 78795639 78796005 MLT2A2 560 + 0 366 84325 366 chain 23498 chr10 135534747 + 78838751 78839037 AluSp 311 + 5 291 113135 286 chain 21645 chr10 135534747 + 78859239 78859500 AluSp 311 + 49 308 121593 253 2 0 6 chain 23976 chr10 135534747 + 78884571 78884943 THE1C 375 - 1 375 110475 24 1 0 56 19 21 118 9 13 22 3 0 37 20 21 4 1 0 58 chain 3786 chr10 135534747 + 78992953 78992996 L1MB8 1703 - 1255 1298 210569 43 chain 23540 chr10 135534747 + 78993232 78993709 LTR3A 482 + 0 482 112903 115 27 8 14 0 23 68 82 82 38 1 2 23 0 7 6 6 0 21 1 0 13 13 12 10 0 1 39 chain 26942 chr10 135534747 + 79017358 79017725 THE1B 368 + 0 368 96477 169 1 0 31 1 0 9 2 6 91 23 22 40 chain 67374 chr10 135534747 + 79099852 79100618 L1PA5 6144 + 5366 6132 49497 406 0 1 32 1 0 85 0 1 98 1 0 143 chain 5743 chr10 135534747 + 79112176 79112335 MER3 215 + 23 203 187701 5 1 0 65 72 94 16 chain 3167 chr10 135534747 + 79143326 79143364 MER33 330 - 77 115 221603 38 chain 10458 chr10 135534747 + 79157573 79157730 L1PB4 2604 - 54 213 158451 58 19 21 80 chain 7609 chr10 135534747 + 79165234 79165351 MER53 195 - 0 119 173482 81 13 15 23 chain 22204 chr10 135534747 + 79198064 79198336 AluSp 311 + 22 297 119330 69 6 9 197 chain 5120 chr10 135534747 + 79203582 79203671 L1MA4 2864 + 2725 2809 193867 12 6 0 28 7 8 36 chain 7124 chr10 135534747 + 79271946 79272039 MER83 447 - 353 447 176584 33 5 6 55 chain 3047 chr10 135534747 + 79281272 79281304 MIR 256 + 101 133 224064 32 chain 30006 chr10 135534747 + 79295129 79295796 L1MA4 2864 + 2179 2806 84785 11 1 0 35 12 10 99 3 0 28 35 38 101 1 0 115 201 165 25 chain 255467 chr10 135534747 + 79327713 79330505 L1PA3long 6157 + 3365 6157 15961 2792 chain 9789 chr10 135534747 + 79342208 79342336 L1PA8 5853 + 5727 5853 161653 13 2 1 19 1 0 93 chain 2793 chr10 135534747 + 79348827 79348857 MER58A 224 - 144 174 228856 30 chain 96520 chr10 135534747 + 79349323 79350510 LTR12C 1709 - 0 1709 37685 27 0 4 142 0 98 26 0 4 104 0 4 72 11 4 44 0 207 106 0 118 368 0 43 27 4 55 256 chain 22758 chr10 135534747 + 79405537 79405883 THE1B 368 + 2 349 116792 51 5 1 115 1 0 29 0 3 5 4 8 10 23 21 35 0 1 68 chain 57379 chr10 135534747 + 79417471 79418223 MER4E 760 - 0 760 54297 394 1 3 98 1 0 5 1 2 82 23 25 51 0 1 53 0 4 25 1 0 17 chain 27342 chr10 135534747 + 79418540 79419552 MER4A1 472 - 0 472 95139 49 1 0 81 2 1 62 18 17 17 29 50 61 1 0 9 559 0 108 0 2 15 chain 20483 chr10 135534747 + 79425890 79426130 L1PA7 6471 - 6 246 125671 240 chain 35805 chr10 135534747 + 79442762 79443246 LTR2B 499 + 0 499 75124 14 1 0 60 3 0 37 13 32 356 chain 18836 chr10 135534747 + 79459636 79459850 L1PA4 6152 + 5937 6151 130557 214 chain 129241 chr10 135534747 + 79465657 79467461 L1MA2 4263 + 2326 4114 28258 318 12 10 23 1 18 212 16 18 327 0 1 322 21 12 75 1 0 146 3 0 136 5 1 11 11 9 33 23 14 30 0 3 13 19 11 36 1 0 9 chain 27715 chr10 135534747 + 79472631 79472941 AluYk4 311 + 0 310 93989 310 chain 79741 chr10 135534747 + 79495997 79497043 MER11C 1089 + 0 1063 43713 122 1 0 125 0 9 61 0 4 65 1 0 140 1 0 37 16 15 112 1 5 4 1 0 38 0 1 127 0 1 10 0 3 41 1 0 117 0 1 25 chain 36158 chr10 135534747 + 79500074 79500668 L1PB1 5432 + 4859 5419 74698 151 2 0 5 8 7 81 1 2 9 3 0 20 1 0 13 1 0 11 4 0 11 3 1 47 0 2 17 2 1 44 1 0 15 14 1 30 14 11 8 2 0 26 1 0 19 1 0 13 1 0 15 chain 15499 chr10 135534747 + 79520031 79520754 MER75 514 - 127 374 139902 106 513 37 104 chain 12775 chr10 135534747 + 79520180 79520335 L1PA6 6164 + 6008 6161 149155 146 2 0 7 chain 80797 chr10 135534747 + 79532574 79533533 LTR13A 966 - 0 966 43270 257 12 11 61 12 13 20 0 3 248 0 1 199 0 3 150 chain 7659 chr10 135534747 + 79536709 79536813 U6 107 - 1 107 173167 38 1 3 65 chain 2495 chr10 135534747 + 79617960 79618037 Tigger3c 601 + 0 75 233180 18 38 36 21 chain 14228 chr10 135534747 + 79664062 79664221 THE1A-int 1579 + 1420 1579 143802 159 chain 20469 chr10 135534747 + 79669013 79669271 L1PA7 6471 + 6209 6469 125706 104 0 1 139 4 5 11 chain 17900 chr10 135534747 + 79672023 79672284 7SLRNA 320 - 20 300 133100 9 5 0 97 0 16 35 0 2 17 19 25 79 chain 10859 chr10 135534747 + 79676469 79676635 L1MB3 1562 + 1046 1201 156748 6 7 0 91 3 1 46 2 0 11 chain 6889 chr10 135534747 + 79714318 79714413 7SLRNA 320 + 197 284 178284 35 8 0 52 chain 32268 chr10 135534747 + 79724195 79724653 Charlie3 2679 + 2221 2679 80412 142 7 12 200 1 0 20 31 26 36 0 1 21 chain 428938 chr10 135534747 + 79754279 79759066 L1PA4 6152 + 1346 6151 9334 787 0 1 1778 0 1 236 0 3 199 0 4 151 0 1 115 0 1 116 1 4 24 8 6 533 0 3 737 0 3 102 chain 4883 chr10 135534747 + 79807028 79807087 MER5A 189 + 130 189 196445 59 chain 23752 chr10 135534747 + 79808365 79808654 AluSx4 309 + 8 302 111765 22 0 5 267 chain 15270 chr10 135534747 + 79821943 79822133 L1PA7 6471 - 5 196 140569 149 6 7 35 chain 63243 chr10 135534747 + 79824518 79825207 L1PA4 6152 - 9 698 51342 689 chain 119440 chr10 135534747 + 79835057 79836464 SVA_C 1631 - 0 1631 31251 17 4 0 13 3 6 577 1 0 4 0 138 45 0 40 108 0 37 388 0 1 33 0 10 13 1 0 144 0 23 17 22 0 17 chain 5250 chr10 135534747 + 79844837 79844915 L1PB1 5432 - 10 84 192513 4 1 0 14 1 0 13 1 0 21 1 0 22 chain 561725 chr10 135534747 + 79848207 79854236 L1PA2 6032 + 1 6031 299 3047 0 1 2982 chain 13719 chr10 135534747 + 79855648 79855837 THE1C 375 + 0 246 145542 66 5 0 21 0 1 87 0 61 10 chain 526462 chr10 135534747 + 79855844 79862856 L1PA7 6471 + 7 6461 4553 233 7 17 147 1 0 267 9 8 75 1 0 197 0 1 326 14 15 310 0 3 182 0 1 319 10 11 47 0 3 716 0 4 209 0 6 144 294 0 249 1 0 83 1 0 5 0 2 618 0 1 82 0 4 167 8 9 24 6 11 136 314 0 26 0 8 477 2 0 420 0 13 39 2 0 805 10 7 5 2 0 22 chain 10311 chr10 135534747 + 79869427 79869554 MER101 471 - 0 128 159084 58 0 1 69 chain 24865 chr10 135534747 + 79902488 79902815 THE1C 375 + 0 326 105545 106 3 4 10 3 0 64 1 2 140 chain 8617 chr10 135534747 + 79907482 79907824 MLT1A 405 - 30 397 167648 75 71 66 16 35 53 35 94 106 16 chain 22661 chr10 135534747 + 79912260 79912627 THE1D 372 + 8 372 117271 67 19 0 70 4 6 39 23 31 13 6 12 126 chain 3963 chr10 135534747 + 79916844 79916891 MER58B 340 - 0 47 207939 47 chain 10987 chr10 135534747 + 79919141 79919269 L1PA5 6144 - 2 130 156244 128 chain 36930 chr10 135534747 + 79979332 79979840 LTR12 884 + 0 873 73614 24 1 0 119 6 5 60 4 137 32 2 0 175 0 236 85 chain 19739 chr10 135534747 + 79997776 79998144 THE1B 368 + 0 368 127984 90 38 33 54 61 66 125 chain 26541 chr10 135534747 + 80001801 80002156 THE1A 353 + 0 353 97876 110 1 0 91 1 0 24 11 10 5 0 1 112 chain 125334 chr10 135534747 + 80002156 80003733 THE1A-int 1579 + 0 1579 29289 95 1 0 265 0 1 77 7 9 694 3 4 170 8 8 51 1 0 205 chain 27541 chr10 135534747 + 80003733 80004088 THE1A 353 + 0 353 94529 110 1 0 91 1 0 152 chain 5240 chr10 135534747 + 80009660 80009840 MER20 218 + 16 218 192621 29 102 124 49 chain 3655 chr10 135534747 + 80031367 80031411 MER47A 366 - 288 332 212710 44 chain 11538 chr10 135534747 + 80060102 80060281 LTR12 884 - 495 711 154151 11 2 0 16 0 25 66 11 0 49 1 26 23 chain 3250 chr10 135534747 + 80160592 80160629 MER47A 366 - 226 263 220015 37 chain 32994 chr10 135534747 + 80183808 80184282 LTR12_ 688 + 1 677 79226 24 1 0 119 24 0 102 11 0 12 0 2 132 0 236 49 chain 156988 chr10 135534747 + 80227713 80229497 SVA_D 2077 - 17 2077 23724 321 0 10 284 1 0 8 0 49 35 1 0 172 1 265 31 40 0 867 5 0 18 chain 2029 chr10 135534747 + 80228581 80228607 SVA_D 2077 - 1519 1546 238357 22 0 1 4 chain 17116 chr10 135534747 + 80260737 80260943 L1PA4 6152 + 5928 6152 135263 55 5 23 146 chain 7754 chr10 135534747 + 80353029 80353148 MLT2B2 565 - 21 139 172584 85 2 0 6 10 11 16 chain 98794 chr10 135534747 + 80365958 80367088 L1PA4 6152 - 29 1155 37073 84 0 1 134 6 1 906 chain 3097 chr10 135534747 + 80399079 80399114 MADE1 96 - 61 96 222968 35 chain 445799 chr10 135534747 + 80426913 80432300 L1PA7 6471 + 1130 6467 8879 224 2 3 33 0 1 809 7 6 236 0 1 109 12 6 25 0 1 48 9 0 106 42 1 290 0 7 467 6 4 70 0 2 33 1 0 221 2 0 244 1 0 14 0 3 379 1 0 340 0 3 443 5 1 189 7 1 65 1 8 99 2 0 240 0 1 274 1 0 330 chain 549933 chr10 135534747 + 80436251 80442408 L1PA4 6152 - 0 6140 1455 2213 0 1 1545 0 1 68 0 1 1824 5 23 6 38 0 458 chain 23393 chr10 135534747 + 80468944 80469287 THE1B 368 - 1 368 113686 124 35 45 29 1 0 105 5 20 44 chain 8105 chr10 135534747 + 80493675 80493838 MER20 218 + 17 184 170461 13 21 22 18 0 3 12 6 5 71 6 7 16 chain 6257 chr10 135534747 + 80510374 80510449 MADE1 96 + 3 94 183111 26 0 16 49 chain 21065 chr10 135534747 + 80613900 80614138 L1PA4 6152 + 5910 6148 123673 238 chain 4085 chr10 135534747 + 80624261 80624410 MER96B 391 - 6 112 206144 13 40 36 45 39 0 12 chain 44236 chr10 135534747 + 80633767 80634315 MLT2A2 560 + 0 560 63904 400 2 13 77 0 1 69 chain 4242 chr10 135534747 + 80649870 80649922 MER125 140 - 77 129 203982 52 chain 26516 chr10 135534747 + 80657581 80657953 THE1C 375 + 0 364 97987 105 20 12 68 1 2 163 1 0 14 chain 3443 chr10 135534747 + 80672868 80672911 MER5A 189 - 141 185 216308 39 0 1 4 chain 23567 chr10 135534747 + 80680926 80681204 AluSg7 307 - 28 307 112765 147 0 1 131 chain 3661 chr10 135534747 + 80749221 80749266 MLT1G1 539 - 266 311 212569 45 chain 23549 chr10 135534747 + 80769705 80769978 AluSq10 312 + 5 278 112858 273 chain 4196 chr10 135534747 + 80792669 80792720 MER30 238 + 53 104 204596 51 chain 2652 chr10 135534747 + 80927043 80927083 MER33 330 - 186 227 230993 17 2 3 21 chain 3100 chr10 135534747 + 80944231 80944268 MIRb 242 + 167 204 222919 37 chain 3001 chr10 135534747 + 80966765 80966801 MIRb 242 - 105 141 225015 36 chain 131921 chr10 135534747 + 81038192 81039736 SVA_B 1603 - 0 1593 27649 5 2 0 608 0 41 85 1 0 12 1 0 561 0 1 112 3 0 5 1 4 99 7 31 9 2 0 9 11 0 11 chain 10087 chr10 135534747 + 81122313 81122454 L1PA8 5853 + 5716 5853 160148 22 4 3 6 2 0 13 1 0 93 chain 5918 chr10 135534747 + 81130375 81130449 SVA_A 1864 + 1793 1864 186014 59 3 0 12 chain 5626 chr10 135534747 + 81176499 81176570 MIR 256 + 72 143 188810 71 chain 8141 chr10 135534747 + 81188884 81188983 L1MB8 1703 + 1458 1557 170286 99 chain 4820 chr10 135534747 + 81210179 81210237 MER44D 709 - 1 59 197124 58 chain 8530 chr10 135534747 + 81218066 81218269 MER53 195 + 2 189 168131 20 23 9 36 25 23 16 9 11 14 2 0 58 chain 29252 chr10 135534747 + 81225496 81225806 AluYg6 310 + 0 310 87785 310 chain 3634 chr10 135534747 + 81232651 81232696 MIR 256 - 126 173 213062 5 0 2 40 chain 40344 chr10 135534747 + 81293115 81294109 MER50 708 - 26 699 68818 41 9 10 6 3 0 55 329 1 48 5 6 128 47 29 73 0 12 152 0 7 16 15 27 13 3 0 10 2 0 39 chain 153320 chr10 135534747 + 81295313 81296975 L1PA3long 6157 + 4479 6142 24182 827 0 1 835 chain 510366 chr10 135534747 + 81330149 81336224 L1PA6 6164 + 0 6145 6134 361 0 1 9 12 20 12 1 0 100 0 2 5 0 3 96 0 1 139 0 1 70 7 11 412 0 1 179 0 10 608 0 1 77 0 50 159 19 0 221 4 1 592 0 4 37 6 8 246 1 2 256 1 0 427 0 1 151 1 0 64 7 11 307 0 1 260 0 1 79 1 0 318 1 0 328 0 1 501 chain 8789 chr10 135534747 + 81349200 81349296 L1PA4 6152 + 6056 6152 166708 96 chain 132137 chr10 135534747 + 81349297 81350857 L1PA6 6164 + 3086 4658 27610 103 0 1 115 0 1 388 7 5 244 0 4 412 1 9 290 chain 27147 chr10 135534747 + 81350857 81351183 L1PA6 6164 + 4659 4985 95765 326 chain 13734 chr10 135534747 + 81351183 81351341 L1PA6 6164 + 4987 5145 145488 158 chain 87497 chr10 135534747 + 81351345 81352358 L1PA6 6164 + 5145 6158 40564 1013 chain 16563 chr10 135534747 + 81363567 81363881 HUERS-P2-int 2744 - 5 298 136763 24 2 0 12 2 0 5 2 0 9 1 0 34 4 1 39 1 0 14 5 3 7 1 0 9 26 27 8 6 0 36 2 0 65 chain 97955 chr10 135534747 + 81380515 81381592 L1PA4 6152 - 1 1079 37291 288 1 2 788 chain 71024 chr10 135534747 + 81381592 81383945 L1PA7 6471 + 2468 6459 47916 164 1416 3052 17 0 1 614 1 2 141 chain 108485 chr10 135534747 + 81398756 81400427 MER57-int 2662 + 1027 2661 34567 99 8 9 269 1 0 35 8 10 89 0 1 259 0 1 42 17 0 15 16 18 24 9 11 381 0 1 37 6 1 6 1 0 40 0 8 14 0 5 11 65 43 48 27 13 19 11 9 4 1 0 7 3 0 23 9 19 27 3 0 31 1 0 5 chain 5330 chr10 135534747 + 81405153 81405235 L1PB1 5432 + 5349 5427 191724 12 0 1 8 1 0 21 1 0 13 1 0 16 2 0 7 chain 25554 chr10 135534747 + 81407009 81407306 AluY 311 + 7 305 101956 118 0 1 179 chain 18357 chr10 135534747 + 81436855 81437081 L1PA6 6164 - 4 232 131913 149 1 3 76 chain 3955 chr10 135534747 + 81481782 81481842 L1MB4 1306 + 811 865 208056 48 6 0 6 chain 9163 chr10 135534747 + 81483078 81483229 MSTB1 431 - 13 161 164748 78 30 27 43 chain 43779 chr10 135534747 + 81501740 81502308 L1PA16 3655 - 82 647 64479 272 12 10 86 2 1 196 chain 13568 chr10 135534747 + 81502412 81502722 THE1B 368 + 13 339 146100 21 2 0 13 19 25 35 10 8 54 1 0 11 17 20 10 0 4 14 24 32 46 1 0 4 8 9 20 chain 251281 chr10 135534747 + 81509545 81513263 L1PA14 3548 + 90 3472 16158 58 4 0 69 1 0 20 2 1 30 2 0 29 8 6 805 1 0 21 22 25 338 1 0 4 0 1 139 0 12 151 2 1 175 0 1 354 0 1 197 317 0 8 1 0 138 9 17 163 0 1 83 3 1 8 0 1 4 3 1 48 2 0 4 2 0 109 11 7 10 2 0 6 1 0 84 1 0 113 1 0 7 7 3 34 4 2 13 1 0 5 2 1 12 4 3 41 6 0 10 1 0 7 chain 14745 chr10 135534747 + 81523611 81523942 L1PA15 4387 - 31 344 142118 27 5 0 14 3 1 44 17 14 39 1 0 10 4 0 17 20 19 32 45 43 53 chain 3649 chr10 135534747 + 81528529 81528571 MLT1B 390 - 16 58 212810 42 chain 14722 chr10 135534747 + 81533929 81534128 MER30B 195 + 0 190 142195 94 13 4 92 chain 3720 chr10 135534747 + 81534303 81534342 MER5B 177 + 0 39 211643 39 chain 35435 chr10 135534747 + 81542425 81543043 L1MA3 4352 - 0 583 75635 22 6 2 14 9 8 18 8 6 21 3 1 84 1 0 54 72 46 18 1 0 186 12 14 89 chain 7078 chr10 135534747 + 81556924 81557007 L1PA6 6164 + 5932 6015 176898 83 chain 12552 chr10 135534747 + 81557007 81557151 L1PA6 6164 + 6016 6160 150035 144 chain 25002 chr10 135534747 + 81572157 81572461 AluY 311 + 0 296 104766 22 8 0 274 chain 78950 chr10 135534747 + 81593108 81594110 L1PA7 6471 + 5450 6464 44080 165 1 4 74 0 1 4 1 3 21 5 0 540 8 11 102 0 2 62 0 5 7 0 1 12 chain 14017 chr10 135534747 + 81617834 81618053 L1PA8 5853 - 9 216 144517 84 1 0 19 2 1 40 16 7 14 1 0 42 chain 21940 chr10 135534747 + 81629444 81629804 THE1B 368 + 0 368 120463 19 1 2 156 71 74 55 0 4 58 chain 22283 chr10 135534747 + 81653466 81653726 AluY 311 + 37 298 118983 95 0 1 165 chain 4785 chr10 135534747 + 81671965 81672029 L1PREC2 3366 + 407 470 197521 37 2 0 21 0 1 4 chain 24245 chr10 135534747 + 81714537 81714951 LTR14A 344 + 0 344 108967 45 52 8 58 31 0 137 7 11 12 0 1 72 chain 547345 chr10 135534747 + 81715921 81722063 L1PA4 6152 + 0 6152 1787 198 9 10 372 1 0 663 0 1 1026 7 14 1656 0 1 1360 0 3 588 1 0 255 1 0 5 chain 10383 chr10 135534747 + 81723485 81723658 L1PA16 3655 - 118 290 158772 36 31 30 106 chain 12396 chr10 135534747 + 81723663 81723807 HERVH-int 3825 + 3681 3825 150653 144 chain 120691 chr10 135534747 + 81725340 81726632 L1HS 6032 - 3 1295 30801 1292 chain 74211 chr10 135534747 + 81726632 81727428 L1HS 6032 + 3941 4737 46359 796 chain 41827 chr10 135534747 + 81734535 81735841 MER9a2 513 - 0 513 66857 28 1 0 56 792 0 429 chain 6752 chr10 135534747 + 81734659 81734737 MER9a2 513 - 171 249 179311 78 chain 6098 chr10 135534747 + 81735330 81735402 MER9a2 513 - 0 72 184435 72 chain 25937 chr10 135534747 + 81736523 81736878 THE1A 353 + 0 353 100267 109 2 1 98 6 5 20 0 3 5 4 1 111 chain 12090 chr10 135534747 + 81764689 81764830 L1PA7 6471 + 6324 6465 151837 141 chain 12428 chr10 135534747 + 81822038 81822193 MER4D1 891 - 5 159 150543 82 1 0 72 chain 53887 chr10 135534747 + 81827411 81828106 MER4E1 777 + 21 770 56438 5 0 3 41 0 19 236 0 23 42 0 1 37 5 6 81 1 0 26 1 9 220 chain 23856 chr10 135534747 + 81828501 81828802 AluSg7 307 - 1 297 111150 8 6 0 166 0 1 121 chain 154318 chr10 135534747 + 81855669 81857538 L1PA7 6471 - 1045 2924 24064 188 0 1 215 3 0 5 4 7 22 0 1 156 2 1 282 1 0 27 0 2 33 0 1 273 0 2 50 3 4 129 0 1 262 0 3 214 chain 88515 chr10 135534747 + 81857538 81858557 L1PA7 6471 + 5436 6461 40144 187 0 4 73 0 2 759 chain 106041 chr10 135534747 + 81865572 81866909 HERVK14-int 1672 + 8 1334 35245 10 1 0 12 1 0 10 2 1 47 1 0 216 2 1 29 3 1 232 1 0 44 7 6 106 0 6 90 1 0 163 4 3 76 1 0 3 1 0 7 2 0 34 1 0 203 1 0 26 chain 25580 chr10 135534747 + 81868431 81868846 LTR14A 344 + 0 344 101827 45 3 0 6 43 4 57 31 0 6 0 1 152 0 1 72 chain 23301 chr10 135534747 + 81889202 81889485 AluYk4 311 + 38 311 114197 79 10 1 94 1 0 99 chain 5578 chr10 135534747 + 81924446 81924514 MIR 256 + 44 112 189295 68 chain 11136 chr10 135534747 + 81942300 81942446 L1PA8 5853 - 5 149 155679 87 6 5 9 1 0 43 chain 153168 chr10 135534747 + 81982682 81984355 L1PA3long 6157 - 0 1673 24205 1673 chain 7514 chr10 135534747 + 81986596 81986710 MER50 708 + 570 682 174071 55 3 0 6 9 10 41 chain 48680 chr10 135534747 + 82026643 82027209 L1PA5 6144 - 5 582 59973 134 1 10 278 0 2 153 chain 29815 chr10 135534747 + 82028539 82029009 LTR61 567 + 1 501 85393 16 3 0 38 17 11 27 3 0 97 7 9 19 2 0 10 1 55 33 1 0 50 12 0 60 7 8 67 chain 35797 chr10 135534747 + 82055344 82055793 MER4A1 472 - 1 472 75138 43 0 1 179 1 22 226 chain 523909 chr10 135534747 + 82063815 82070251 L1PA6 6164 + 0 6162 4777 194 1 2 4 1 0 55 16 15 101 25 32 97 11 10 277 0 17 384 0 3 446 0 1 415 0 1 159 0 2 153 0 7 950 0 3 367 1 0 1773 0 1 319 313 0 374 chain 25775 chr10 135534747 + 82069568 82069876 AluY 311 + 4 311 100988 72 2 0 56 0 1 178 chain 88081 chr10 135534747 + 82075011 82076383 LTR12C 1709 + 0 1709 40343 35 3 0 6 47 54 113 7 10 31 12 13 16 13 18 42 0 43 85 25 7 35 2 9 7 7 0 126 0 119 62 0 161 79 0 47 90 24 0 16 11 4 71 18 22 300 5 4 84 chain 126001 chr10 135534747 + 82091325 82093349 L1MA3 4352 + 2313 4352 29097 56 10 14 106 0 5 89 1 0 138 6 7 31 13 36 174 5 15 220 0 1 110 0 1 6 78 81 10 0 1 118 9 12 69 17 10 99 6 5 14 1 0 4 0 1 158 0 1 40 7 8 37 5 4 41 91 69 7 0 3 66 1 0 78 2 0 24 2 1 5 1 0 26 1 0 10 10 6 22 chain 27466 chr10 135534747 + 82104293 82104647 THE1A 353 + 0 353 94754 119 2 1 233 chain 5001 chr10 135534747 + 82118940 82119026 LTR12C 1709 - 832 943 195130 31 0 40 33 15 0 7 chain 14625 chr10 135534747 + 82128294 82128536 L1MB3 1562 - 653 905 142504 55 3 0 5 0 3 8 9 17 67 11 10 20 6 9 58 chain 2412 chr10 135534747 + 82147294 82147426 L1MCb 1641 - 1463 1596 234101 25 85 87 16 1 0 5 chain 9111 chr10 135534747 + 82152807 82152918 L1MB2 1706 - 343 454 165008 111 chain 24864 chr10 135534747 + 82158871 82159162 AluY 311 + 11 300 105547 112 2 0 177 chain 45609 chr10 135534747 + 82160779 82161292 MER9a1 513 + 0 513 62392 513 chain 56849 chr10 135534747 + 82176692 82177341 LTR6A 649 - 0 649 54632 140 0 1 76 1 0 432 chain 27160 chr10 135534747 + 82179051 82179363 AluSp 311 - 0 311 95721 132 1 0 179 chain 13198 chr10 135534747 + 82199596 82199900 L1MA8 2339 + 1653 1968 147474 69 32 42 58 23 19 11 2 0 23 6 19 37 29 23 14 chain 8240 chr10 135534747 + 82201652 82201791 MER70B 575 + 7 150 169734 38 11 12 65 6 8 13 0 1 6 chain 2980 chr10 135534747 + 82202906 82202939 MER72 723 + 688 721 225449 33 chain 8005 chr10 135534747 + 82229723 82229820 MER2 342 - 93 190 171015 97 chain 137533 chr10 135534747 + 82238630 82240116 L1PA3long 6157 - 581 2067 26555 1486 chain 52210 chr10 135534747 + 82240116 82240696 L1PA3long 6157 + 5577 6157 57493 580 chain 8399 chr10 135534747 + 82241436 82241535 AluSp 311 - 67 166 168858 99 chain 7652 chr10 135534747 + 82273365 82273481 MER58B 340 + 60 175 173215 17 10 9 89 chain 171606 chr10 135534747 + 82293107 82295327 SVA_D 2077 + 0 2074 21866 11 3 0 531 0 40 142 0 3 34 3 0 137 26 62 74 17 18 15 0 1 266 225 0 642 0 4 94 chain 7406 chr10 135534747 + 82294366 82294591 SVA_D 2077 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chain 4662 chr10 135534747 + 82366416 82366471 MER63D 473 - 378 433 198942 55 chain 16394 chr10 135534747 + 82391318 82391686 L1MA8 2339 + 1895 2231 137224 23 16 13 23 2 0 55 2 1 76 18 16 14 21 3 22 22 19 38 12 9 24 chain 490709 chr10 135534747 + 82395559 82401264 L1PA6 6164 - 4 5744 7331 6 2 0 136 16 16 114 0 1 572 1 0 87 0 10 53 3 4 452 0 1 197 0 4 143 1 0 1174 0 1 125 3 4 492 0 1 74 0 4 162 0 2 107 0 1 111 8 0 1100 7 8 181 2 19 220 0 2 111 7 6 21 0 1 17 chain 31486 chr10 135534747 + 82465551 82465994 L1PB4 2604 + 2111 2542 81665 237 0 2 36 21 0 99 1 7 10 0 1 39 chain 28596 chr10 135534747 + 82469734 82470073 LTR14A 344 + 0 337 90755 214 1 0 59 1 0 64 chain 555773 chr10 135534747 + 82482265 82488300 L1PA2 6032 - 1 6029 745 2891 2 1 2422 7 0 363 1 2 349 chain 59507 chr10 135534747 + 82496241 82496998 MER4E1 777 + 0 760 53104 23 1 2 105 4 5 251 0 1 74 0 5 74 15 10 210 chain 38578 chr10 135534747 + 82498393 82498902 LTR10D 510 + 0 510 71326 75 0 4 20 3 0 133 13 15 172 2 0 91 chain 37607 chr10 135534747 + 82507286 82507793 LTR10D 510 + 0 510 72676 85 0 3 6 1 0 138 13 15 93 0 1 78 2 0 91 chain 24535 chr10 135534747 + 82545089 82545385 AluSp 311 + 9 305 107341 296 chain 90238 chr10 135534747 + 82565637 82566667 LTR5A 1029 + 0 1029 39565 14 0 2 131 1 0 204 1 0 338 0 2 186 3 0 152 chain 19312 chr10 135534747 + 82572303 82572581 L1PA8 5853 - 6 278 129211 87 1 0 19 2 1 39 3 2 20 3 2 69 5 3 30 chain 85995 chr10 135534747 + 82573784 82575060 LTR12C 1709 + 0 1709 41157 208 5 25 16 43 47 42 3 46 80 21 10 10 7 8 50 0 1 154 0 279 133 15 12 101 13 6 84 2 9 75 0 102 57 2 1 71 1 0 8 1 0 74 chain 421179 chr10 135534747 + 82578055 82583728 L1PA8 5853 + 113 5849 9507 71 5 6 105 25 13 163 0 1 61 0 1 64 1 5 149 1 0 177 0 1 117 105 164 182 0 1 120 4 0 265 0 1 35 0 1 47 4 5 37 1 0 92 0 1 8 6 12 200 0 2 35 0 1 15 0 4 57 0 1 47 1 2 99 0 4 188 1 3 41 1 0 217 0 4 192 0 135 5 0 1 56 0 4 64 0 2 11 1 3 179 29 8 344 1 0 273 4 3 148 0 20 147 0 3 21 0 5 9 9 0 118 0 6 73 0 1 240 0 2 32 5 9 35 1 0 371 167 5 67 4 5 25 1 0 49 2 0 69 6 5 5 1 0 52 5 4 16 1 0 23 0 1 65 chain 13344 chr10 135534747 + 82583170 82583334 L1P3 4156 + 3810 3979 146018 72 0 1 56 0 4 36 chain 26008 chr10 135534747 + 82584078 82584365 AluYf4 310 - 23 310 99984 287 chain 20639 chr10 135534747 + 82589922 82590162 L1P1 4361 + 1 241 124876 240 chain 285443 chr10 135534747 + 82590162 82593341 L1PA4 6152 + 2962 6139 14326 254 1 0 1413 1 0 1510 chain 508519 chr10 135534747 + 82595531 82601964 L1PA7 6471 - 1 6468 6276 20 0 1 84 2 1 391 6 0 353 1 4 110 0 3 396 16 20 68 0 1 185 7 5 13 0 1 313 5 3 120 0 7 50 0 3 11 12 13 105 1 7 83 0 1 98 1 4 245 0 1 138 1 0 103 1 6 17 3 2 384 0 4 53 0 1 403 1 2 506 11 10 58 11 7 323 1 2 174 5 7 310 0 1 101 0 1 134 5 6 381 1 2 211 1 0 400 chain 8633 chr10 135534747 + 82602782 82603007 MSTB1 431 + 191 418 167571 15 13 15 33 80 80 84 chain 7825 chr10 135534747 + 82607905 82607997 LTR47A 437 + 332 424 172162 92 chain 132211 chr10 135534747 + 82618808 82620452 LTR12C 1709 + 0 1709 27586 282 9 5 22 0 1 4 1 0 81 19 5 412 0 40 52 8 10 42 0 41 114 1 0 5 3 1 107 0 4 152 2 0 219 8 9 101 chain 225812 chr10 135534747 + 82624981 82627592 L1PA6 6164 - 2 2645 17538 112 0 5 159 0 15 551 0 8 19 0 1 1588 0 3 182 chain 210824 chr10 135534747 + 82634810 82637509 L1PA8 5853 - 38 2648 18441 55 1 0 19 2 1 51 1 0 10 1 0 71 2 0 45 1 0 186 0 3 23 0 1 107 4 1 5 0 3 225 0 3 226 94 0 308 18 18 714 0 1 43 0 2 14 0 1 61 0 1 412 chain 538431 chr10 135534747 + 82641224 82647351 L1PA4 6152 + 2 6143 3082 763 1 2 808 0 3 94 0 2 888 8 9 329 12 0 9 0 12 1437 0 2 938 0 4 538 0 1 302 chain 56110 chr10 135534747 + 82662548 82663468 L1MA3 4352 - 24 916 55064 15 1 0 25 1 0 6 1 0 24 9 7 71 1 0 7 97 80 341 5 6 107 13 9 14 11 9 171 chain 24726 chr10 135534747 + 82670144 82670504 LTR7 482 - 0 482 106288 6 1 0 109 1 2 70 5 6 25 8 40 71 10 99 54 chain 3483 chr10 135534747 + 82684254 82684313 LTR55 556 + 474 533 215624 11 6 7 33 1 0 8 chain 18001 chr10 135534747 + 82695090 82695315 Tigger2 2703 + 2367 2596 132853 142 0 4 83 chain 41992 chr10 135534747 + 82706857 82707770 MER41A 554 - 0 554 66637 123 0 1 59 0 1 205 0 1 26 19 15 53 358 0 70 chain 172788 chr10 135534747 + 82712514 82715190 MER61-int 3695 - 10 2387 21736 21 10 4 10 9 15 41 7 5 153 1 0 4 1 3 64 11 15 79 318 0 119 5 1 144 0 1 101 6 5 38 14 13 84 1 0 346 17 24 34 0 18 120 0 3 30 6 9 49 22 9 495 0 5 189 1 0 126 chain 40350 chr10 135534747 + 82726967 82727506 MER41A 554 - 0 552 68808 51 29 34 60 0 4 206 1 2 75 1 4 116 chain 4596 chr10 135534747 + 82727533 82727598 MER41B 635 + 568 635 199681 12 4 6 49 chain 28758 chr10 135534747 + 82737748 82738056 AluYa5 310 - 5 310 90080 187 3 0 118 chain 85905 chr10 135534747 + 82764512 82765529 L1PA5 6144 + 5134 6144 41191 160 1 0 583 2 1 33 7 1 69 15 16 147 chain 4351 chr10 135534747 + 82772525 82772592 MER21C 908 - 789 865 202579 14 4 13 49 chain 117200 chr10 135534747 + 82783784 82785140 L1PA6 6164 + 4795 6156 32056 497 0 1 19 0 4 840 chain 14646 chr10 135534747 + 82785843 82786040 Tigger3a 397 + 173 374 142435 153 9 13 35 chain 112800 chr10 135534747 + 82788682 82790226 THE1B-int 1605 - 8 1577 33443 9 0 1 438 3 13 125 1 0 5 1 2 42 1 7 6 6 0 365 18 27 76 48 53 256 3 2 109 0 1 32 chain 88383 chr10 135534747 + 82811972 82813232 L1PB1 5432 + 4210 5417 40228 371 0 1 23 0 4 17 2 0 94 0 3 380 39 11 24 1 0 6 3 2 10 2 0 3 2 0 8 2 0 52 1 0 13 6 5 43 1 0 13 8 5 13 8 0 16 3 1 4 1 0 14 2 0 24 1 0 14 8 7 13 1 0 9 1 0 4 chain 2938 chr10 135534747 + 82824534 82824568 MLT1F2 592 + 63 97 226383 34 chain 19750 chr10 135534747 + 82824831 82825075 L1PA4 6152 + 5903 6143 127958 166 6 1 46 0 1 26 chain 7041 chr10 135534747 + 82838655 82838740 L1PA15 4387 - 2114 2199 177177 85 chain 402164 chr10 135534747 + 82846921 82852417 L1PB1 5432 - 13 5398 10021 15 2 1 12 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 4 3 40 1 0 16 2 1 51 2 0 7 8 4 12 1 0 12 1 0 20 1 0 11 104 30 260 8 0 105 0 2 80 3 1 13 1 5 100 15 22 750 4 7 235 3 4 480 1 0 152 2 3 19 1 0 45 2 10 177 13 12 89 27 18 231 0 1 6 1 0 101 0 11 253 0 1 8 0 1 188 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135534747 + 83024302 83024382 LTR12C 1709 - 897 975 143591 30 11 9 39 chain 38314 chr10 135534747 + 83028552 83029136 LTR12F 595 + 0 595 71691 91 1 38 13 6 4 31 42 8 25 0 9 134 6 5 164 1 0 9 5 8 56 chain 20254 chr10 135534747 + 83042598 83042879 MER41C 542 - 233 518 126367 81 1 4 34 0 8 13 8 0 119 0 1 25 chain 18783 chr10 135534747 + 83063241 83063545 L1P4 1494 + 1140 1444 130726 140 4 5 26 0 6 33 7 6 34 7 5 15 2 0 3 1 0 27 1 0 4 chain 18540 chr10 135534747 + 83065705 83065921 L1PA5 6144 - 9 225 131391 216 chain 114211 chr10 135534747 + 83067636 83069408 LTR12C 1709 - 0 1709 33025 60 320 7 101 0 102 211 0 4 106 1 158 123 1 0 530 14 5 23 27 23 61 0 2 67 1 0 126 chain 28006 chr10 135534747 + 83067714 83068016 AluYf4 310 - 9 310 92981 175 1 0 126 chain 9646 chr10 135534747 + 83095244 83095363 L1PA10 4194 - 703 822 162372 119 chain 167899 chr10 135534747 + 83110134 83111973 L1PA3long 6157 + 4303 6142 22294 4 1 0 1700 0 1 134 chain 25569 chr10 135534747 + 83113270 83113575 L1PA5 6144 + 5836 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83201430 L1PA2 6032 - 7 1038 38259 762 0 1 268 chain 25668 chr10 135534747 + 83201430 83201731 L1HS 6032 - 5720 6020 101069 56 1 0 244 chain 63880 chr10 135534747 + 83219545 83220315 LTR17 781 + 0 772 51065 186 0 1 20 1 2 118 1 0 18 0 1 426 chain 9760 chr10 135534747 + 83225567 83225688 L1PA5 6144 - 15 138 161794 14 0 2 107 chain 40978 chr10 135534747 + 83250714 83251345 L1PB1 5432 - 152 768 67938 42 20 18 53 32 25 4 1 0 24 1 0 11 11 0 100 0 1 66 7 11 82 0 1 38 0 1 139 chain 10769 chr10 135534747 + 83263088 83263271 LTR12C 1709 + 772 1037 157116 65 1 0 20 0 41 43 0 1 7 29 70 18 chain 102970 chr10 135534747 + 83265399 83266739 LTR12C 1709 + 0 1701 35998 268 27 28 42 20 72 54 0 1 329 8 324 31 1 0 66 20 13 399 1 0 74 chain 23120 chr10 135534747 + 83278275 83278573 L1PB1 5432 - 450 745 115037 144 1 0 40 1 0 99 2 1 11 chain 24997 chr10 135534747 + 83278575 83279037 L1PB1 5432 + 4993 5422 104807 22 0 2 86 2 0 11 1 0 23 0 3 6 5 0 12 5 1 7 2 0 54 2 1 12 7 6 42 1 0 15 25 12 19 7 4 15 2 0 24 2 1 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83414387 L1PA4 6152 + 5569 6143 58342 574 chain 21196 chr10 135534747 + 83427017 83427312 AluSg7 307 + 1 293 123225 15 7 3 112 0 1 5 17 17 139 chain 450932 chr10 135534747 + 83456496 83462760 L1PA8A 6298 + 44 6280 8742 17 28 18 21 4 1 18 75 58 10 2 0 17 9 6 10 3 2 8 1 0 5 1 0 4 22 17 9 1 0 43 1 0 23 6 0 9 0 1 14 0 3 50 8 13 11 1 0 3 1 0 120 0 1 205 23 24 214 13 22 108 6 0 11 1 0 98 0 1 290 0 1 295 0 3 344 0 1 44 4 5 136 0 1 141 6 1 15 0 1 43 5 4 63 0 1 90 0 1 393 7 8 82 1 0 75 0 25 273 8 4 77 3 0 49 27 29 137 0 1 164 33 12 7 0 1 35 0 1 98 0 2 452 0 1 443 0 1 48 0 2 226 3 4 40 0 1 74 2 0 87 2 0 230 1 0 80 0 1 74 16 17 307 chain 556547 chr10 135534747 + 83469371 83475398 L1PA2 6032 + 4 6032 667 2218 0 1 1386 0 1 121 1 0 2301 chain 52489 chr10 135534747 + 83490205 83490872 PABL_B 668 - 0 668 57309 362 0 1 305 chain 360514 chr10 135534747 + 83494719 83499019 L1P1 4361 + 4 4341 11349 226 0 1 5 2 1 166 0 4 726 2 0 142 0 1 8 1 2 291 0 3 236 0 1 493 1 0 70 0 4 20 0 1 432 1 2 108 0 1 95 0 1 248 0 24 593 0 1 241 1 0 154 1 0 23 2 1 12 chain 73464 chr10 135534747 + 83500000 83500820 L1PA5 6144 + 5324 6143 46804 807 1 0 12 chain 400580 chr10 135534747 + 83523023 83528093 L1PA8A 6298 - 6 5162 10078 331 0 1 123 7 8 172 16 17 149 0 3 75 1 4 189 5 14 100 0 3 608 1 0 617 3 4 399 1 0 120 3 2 255 0 1 222 0 3 20 0 1 54 0 93 148 0 1 45 27 0 475 21 0 280 0 9 54 7 11 14 1 2 36 0 1 392 0 1 99 chain 437999 chr10 135534747 + 83528137 83532997 L1HS 6032 - 1170 6032 9104 594 0 1 3346 0 2 663 1 0 256 chain 17623 chr10 135534747 + 83544446 83544703 LTR12C 1709 + 934 1215 133928 134 4 51 20 0 1 67 24 0 8 chain 5520 chr10 135534747 + 83561034 83561100 MLT1A0 366 + 253 319 189848 66 chain 57415 chr10 135534747 + 83590732 83591463 LTR17 781 - 27 781 54282 30 0 3 6 1 20 108 1 2 258 1 0 69 13 14 244 chain 8123 chr10 135534747 + 83606854 83606943 L1PA6 6164 - 188 277 170364 89 chain 15020 chr10 135534747 + 83606943 83607132 L1PA6 6164 + 5975 6162 141267 181 2 0 6 chain 28758 chr10 135534747 + 83616519 83616827 L1HS 6032 - 0 308 90079 308 chain 98115 chr10 135534747 + 83621696 83622998 LTR12C 1709 - 0 1709 37247 59 0 131 291 11 4 60 2 0 46 3 1 5 1 0 183 0 280 170 18 15 35 1 0 128 5 6 13 19 20 43 5 15 204 chain 10288 chr10 135534747 + 83693202 83693326 L1PA4 6152 - 16 138 159191 51 2 0 71 chain 44275 chr10 135534747 + 83711509 83712006 L1PA4 6152 + 5622 6150 63851 312 0 31 185 chain 29521 chr10 135534747 + 83722881 83723188 AluYa5 310 - 3 310 86567 307 chain 5349 chr10 135534747 + 83737852 83737963 L1MA5A 2387 - 88 170 191553 4 1 0 65 28 0 13 chain 278666 chr10 135534747 + 83776692 83779845 L1PA5 6144 - 0 3153 14709 384 4 0 705 0 5 1372 1 0 687 chain 240747 chr10 135534747 + 83804334 83807003 L1PA3long 6157 - 0 2679 16732 161 0 10 2508 chain 164398 chr10 135534747 + 83807003 83808838 L1PA3long 6157 + 1639 3476 22670 568 0 2 1155 1 3 103 2 0 6 chain 18027 chr10 135534747 + 83884216 83884487 L1PA8 5853 + 5581 5853 132784 27 2 0 20 20 27 24 1 0 14 1 0 47 2 1 19 1 0 93 chain 16199 chr10 135534747 + 83889987 83890189 L1PA5 6144 - 6 204 137756 33 9 5 160 chain 29282 chr10 135534747 + 83894059 83894529 L1PA14 3548 - 175 626 87648 11 0 2 18 5 1 10 1 0 110 1 0 84 9 6 13 5 3 5 2 0 104 9 5 48 2 0 14 3 1 16 chain 43128 chr10 135534747 + 83898265 83898816 MLT2A2 560 - 0 560 65257 13 0 1 202 0 7 133 0 1 81 0 2 6 3 1 113 chain 38517 chr10 135534747 + 84021213 84021687 MER9a3 513 - 0 478 71413 79 0 1 12 0 2 133 0 2 26 1 0 58 2 1 87 0 1 76 chain 18700 chr10 135534747 + 84046861 84047248 MSTA 426 + 16 425 130944 10 1 2 50 35 54 61 85 87 145 chain 45704 chr10 135534747 + 84077472 84078106 PRIMA4_LTR 623 - 9 623 62310 36 3 0 23 8 9 87 0 1 28 1 0 38 5 0 135 7 8 107 16 0 14 0 1 34 0 1 92 chain 551019 chr10 135534747 + 84103818 84109842 L1PA2 6032 - 0 6028 1305 769 0 1 2181 1 0 2030 9 12 964 0 1 70 chain 3252 chr10 135534747 + 84135839 84135891 MER5A1 166 - 59 112 219976 28 5 6 19 chain 10510 chr10 135534747 + 84192050 84192184 L1MA4 2864 - 207 340 158205 20 1 0 113 chain 473994 chr10 135534747 + 84192272 84198372 L1PA8A 6298 - 8 6031 7915 224 0 1 6 3 0 37 0 1 62 0 1 28 0 1 279 2 1 159 2 1 146 0 1 63 3 18 20 0 1 545 1 0 20 0 2 416 9 11 167 0 2 127 13 14 64 8 9 415 1 0 43 1 0 141 0 1 4 1 0 225 96 0 62 0 6 402 0 1 11 7 9 33 0 1 149 5 4 638 1 2 455 0 3 131 6 0 690 1 0 5 1 0 6 1 0 22 2 0 30 0 3 42 6 0 17 1 0 45 chain 6640 chr10 135534747 + 84216292 84216397 Tigger3b 1229 - 1125 1229 180168 61 14 13 30 chain 40693 chr10 135534747 + 84238005 84238437 SVA_F 1814 - 0 432 68304 432 chain 11822 chr10 135534747 + 84274409 84274581 L1PA10 4194 - 37 205 152939 10 2 1 30 3 0 127 chain 34994 chr10 135534747 + 84301065 84301529 LTR2 463 - 0 463 76196 24 1 0 30 1 0 27 3 4 145 23 23 210 chain 23267 chr10 135534747 + 84301675 84302001 L1PA8 5853 - 0 319 114353 93 1 0 16 1 0 43 14 13 9 2 1 70 2 0 44 1 0 30 chain 5114 chr10 135534747 + 84348556 84348627 MSTB 430 + 358 430 193917 52 2 3 17 chain 84480 chr10 135534747 + 84371032 84372012 L1PA6 6164 - 6 990 41726 146 1 0 514 0 1 181 0 4 138 chain 19600 chr10 135534747 + 84373445 84373659 L1PA3long 6157 - 0 214 128384 214 chain 7325 chr10 135534747 + 84401830 84401933 L1PB4 2604 - 75 187 175267 12 0 4 16 1 6 74 chain 25617 chr10 135534747 + 84402887 84403265 THE1B 368 + 0 367 101635 15 2 0 22 0 5 63 25 16 54 1 0 17 4 0 175 chain 173225 chr10 135534747 + 84406762 84408673 L1PA3long 6157 - 0 1911 21689 738 0 1 698 1 0 474 chain 27947 chr10 135534747 + 84408673 84408978 L1PA3long 6157 + 3938 4243 93180 305 chain 29962 chr10 135534747 + 84437951 84438343 LTR7 482 - 9 482 84929 82 1 0 85 0 1 41 1 32 68 13 63 101 chain 26686 chr10 135534747 + 84486068 84486434 THE1B 368 + 1 368 97360 62 5 7 99 1 0 11 6 1 81 0 1 43 0 4 58 chain 121536 chr10 135534747 + 84486494 84487999 THE1B-int 1605 + 59 1585 30526 220 0 1 150 1 26 220 2 0 152 0 3 724 6 0 30 chain 37707 chr10 135534747 + 84495189 84495671 L1PA8 5853 + 5370 5847 72544 194 1 0 118 1 0 6 1 0 54 1 0 17 2 1 87 chain 54912 chr10 135534747 + 84539484 84540141 L1PA7 6471 - 3 664 55762 101 1 2 73 7 9 378 0 1 97 chain 241538 chr10 135534747 + 84542468 84545120 L1PA3long 6157 + 3498 6157 16694 398 0 2 1390 0 4 531 0 1 333 chain 52106 chr10 135534747 + 84596499 84597111 L1PA4 6152 - 9 612 57559 62 9 0 541 chain 16063 chr10 135534747 + 84598558 84598892 THE1B 368 - 12 366 138171 44 9 10 60 3 18 10 0 1 4 41 40 15 8 3 34 32 41 74 chain 16903 chr10 135534747 + 84611973 84612215 L1PA8 5853 + 5616 5853 135839 66 1 0 11 2 0 45 4 3 18 3 2 92 chain 46807 chr10 135534747 + 84613064 84613725 L1PB 1623 - 99 743 61365 9 1 0 13 5 1 13 3 0 4 1 0 30 2 1 7 1 0 142 9 0 200 0 3 221 chain 66203 chr10 135534747 + 84622612 84623461 L1PA8 5853 - 0 846 50001 92 2 1 19 2 1 52 2 1 8 2 1 70 2 0 44 1 0 311 0 1 70 0 1 135 6 8 31 chain 3786 chr10 135534747 + 84623965 84624008 MADE1 96 - 53 96 210573 43 chain 31362 chr10 135534747 + 84654498 84654906 L1PA8 5853 - 0 404 81883 93 1 0 19 2 1 61 1 0 37 0 2 32 2 0 45 1 0 114 chain 5140 chr10 135534747 + 84662496 84662587 Tigger2b_Pri 1066 + 0 91 193676 42 11 12 31 1 0 6 chain 11930 chr10 135534747 + 84685813 84685990 MER2B 336 + 8 188 152480 58 1 2 6 1 0 50 8 11 53 chain 103586 chr10 135534747 + 84687113 84688343 L1PA7 6471 - 5 1247 35836 107 2 9 29 0 1 692 0 5 361 1 0 38 chain 3231 chr10 135534747 + 84720106 84720143 MER67A 545 - 0 37 220410 37 chain 30693 chr10 135534747 + 84720298 84720755 LTR7 482 + 0 476 83047 69 59 46 115 0 31 46 4 5 164 chain 3598 chr10 135534747 + 84720381 84720426 LTR7 482 + 121 166 198312 45 chain 4698 chr10 135534747 + 84723080 84723154 LTR23 429 - 122 197 198556 25 8 9 41 chain 3843 chr10 135534747 + 84744652 84744698 MIRc 230 + 69 115 209737 46 chain 38094 chr10 135534747 + 84769901 84770425 MLT2A2 560 - 0 560 71998 6 0 4 44 0 1 4 1 0 64 0 4 18 1 12 195 24 41 167 chain 82840 chr10 135534747 + 84778183 84779216 MER11C 1089 + 0 1074 42401 224 0 2 33 0 3 57 1 18 253 8 9 175 0 8 150 0 10 132 chain 40534 chr10 135534747 + 84782364 84782834 L1PA7 6471 - 184 654 68543 470 chain 12085 chr10 135534747 + 84782834 84783003 L1PA7 6471 + 6298 6466 151856 30 9 8 130 chain 141463 chr10 135534747 + 84787154 84788945 L1PA7 6471 + 4716 6467 25907 268 0 1 34 16 1 685 35 10 592 21 20 140 chain 129910 chr10 135534747 + 84825964 84827716 L1PA11 4918 - 411 2165 28103 8 1 0 10 1 0 15 2 0 67 2 0 10 10 9 51 9 5 8 1 0 112 0 5 55 0 2 14 7 5 109 0 1 11 0 1 356 0 2 163 0 3 460 0 3 47 53 52 170 chain 2638 chr10 135534747 + 84827766 84827813 U6 107 - 47 93 231177 23 7 6 17 chain 3752 chr10 135534747 + 84841211 84841256 MER11C 1089 + 146 191 211112 45 chain 514051 chr10 135534747 + 84848658 84855090 L1PA7 6471 + 0 6469 5770 240 0 10 145 10 12 170 3 0 140 24 36 237 13 14 274 12 20 262 0 1 950 1 2 119 13 0 59 0 1 955 0 7 111 0 8 236 1 0 706 1 2 230 0 1 7 5 4 608 1 0 4 0 1 50 2 0 234 0 3 144 6 10 444 3 0 12 chain 22346 chr10 135534747 + 84855937 84856255 L1PA8 5853 - 6 318 118722 87 1 0 19 2 1 52 1 0 9 2 1 70 11 9 35 1 0 23 0 1 5 chain 11468 chr10 135534747 + 84868098 84868244 L1PA5 6144 + 5997 6144 154436 48 1 2 97 chain 20013 chr10 135534747 + 84880930 84881182 AluY 311 + 57 311 127103 69 0 2 183 chain 142521 chr10 135534747 + 84885451 84887154 L1PA7 6471 + 4759 6465 25723 856 1 4 688 1 2 8 1 0 148 chain 237880 chr10 135534747 + 84891868 84894843 L1P2 5180 - 1679 5178 16889 292 1 0 38 2 1 111 0 1 268 6 10 261 12 0 6 0 12 182 2 0 952 7 8 90 0 1 255 1 0 215 0 15 186 0 507 88 chain 44481 chr10 135534747 + 84946501 84947014 MER9a1 513 - 0 513 63600 208 1 0 125 0 1 179 chain 84548 chr10 135534747 + 84961662 84962869 L1PA13 3608 - 120 1324 41702 21 1 0 15 12 8 48 2 0 10 2 1 36 15 17 59 8 6 41 0 4 62 1 0 28 1 0 123 0 4 8 1 0 12 1 2 302 19 15 114 0 1 79 0 1 56 1 2 129 chain 6478 chr10 135534747 + 84966672 84966835 L1PREC2 3366 + 2906 3048 181410 15 2 0 30 37 20 25 16 14 38 chain 3722 chr10 135534747 + 84972288 84972330 MLT2B2 565 + 523 565 211616 42 chain 191258 chr10 135534747 + 84997892 85000000 L1PA3long 6157 - 0 2111 19935 15 3 0 318 0 1 93 0 2 845 0 4 36 1 0 797 chain 8511 chr10 135534747 + 85000000 85000092 L1P1 4361 - 327 419 168234 92 chain 62007 chr10 135534747 + 85003164 85003917 L1PA8 5853 - 1743 2503 51776 204 0 2 483 0 5 66 chain 127548 chr10 135534747 + 85003917 85005726 L1PA8 5853 + 4119 5853 28684 96 2 1 100 2 1 75 83 34 64 0 1 170 1 0 55 4 5 285 2 0 3 1 0 48 27 1 74 0 1 4 0 1 339 0 9 76 1 0 46 2 0 51 1 2 5 1 0 11 3 2 14 6 5 42 5 4 16 2 1 92 chain 32359 chr10 135534747 + 85017794 85018184 L1PA5 6144 - 5 402 80255 320 0 8 28 0 1 6 2 0 34 chain 288519 chr10 135534747 + 85054032 85057356 L1PA5 6144 + 0 6143 14123 217 0 2816 236 0 2 31 8 9 190 0 1 173 1 0 2306 1 6 6 2 0 5 3 0 145 chain 63709 chr10 135534747 + 85082751 85083703 L1MA2 4263 + 3169 4105 51139 65 1 3 268 15 16 4 1 0 37 0 2 19 5 2 8 1 0 7 0 1 23 5 1 32 6 5 82 0 1 56 8 5 152 1 0 6 2 1 93 10 3 14 1 0 30 chain 519137 chr10 135534747 + 85097127 85103251 L1PA5 6144 - 0 6144 5250 850 2 0 672 1 0 273 0 2 844 0 1 300 1 2 667 1 2 225 2 1 522 9 10 176 0 1 40 1 2 318 0 1 4 1 0 61 10 1 334 0 17 14 17 0 509 1 0 101 28 40 19 1 15 120 chain 34877 chr10 135534747 + 85110693 85111099 L1PA8A 6298 - 7 414 76369 282 0 1 124 chain 14647 chr10 135534747 + 85119578 85119750 L1PA5 6144 - 677 850 142432 39 0 1 113 0 1 4 1 0 15 chain 69413 chr10 135534747 + 85119751 85120539 L1PA5 6144 - 850 1638 48644 788 chain 139166 chr10 135534747 + 85120560 85122133 L1PA5 6144 - 1653 3226 26268 1573 chain 42762 chr10 135534747 + 85122135 85122619 L1PA5 6144 + 5461 5945 65708 484 chain 12747 chr10 135534747 + 85122696 85122842 L1PA5 6144 + 5998 6144 149265 146 chain 17874 chr10 135534747 + 85143846 85144144 L1MA2 4263 - 216 512 133179 72 44 45 121 16 13 45 chain 4650 chr10 135534747 + 85147837 85147894 L1MA2 4263 - 4166 4223 199057 57 chain 12781 chr10 135534747 + 85162241 85162512 L1PA15 4387 - 56 313 149133 5 2 0 14 2 0 42 17 14 39 20 15 17 1 0 35 20 19 57 chain 30822 chr10 135534747 + 85196402 85196800 MLT2A1 477 + 0 395 82832 169 4 1 18 0 1 6 3 2 198 chain 227765 chr10 135534747 + 85199386 85201952 L1PA4 6152 + 3573 6152 17436 871 0 6 854 0 4 509 0 1 302 0 1 22 0 1 8 chain 65904 chr10 135534747 + 85222320 85223133 LTR12 884 + 0 884 50136 79 0 66 233 2 0 331 1 0 39 0 8 128 chain 95894 chr10 135534747 + 85223159 85224465 HERV9-int 5642 + 5 1237 37846 18 11 7 49 5 15 84 4 3 79 0 4 461 0 1 69 1 0 258 80 0 54 3 0 130 chain 25314 chr10 135534747 + 85258795 85259096 AluY 311 + 0 307 103149 83 0 5 44 2 3 172 chain 4000 chr10 135534747 + 85259896 85259954 MER58B 340 + 43 99 207390 11 2 0 45 chain 56679 chr10 135534747 + 85280247 85280956 SVA_A 1864 + 550 1864 54733 19 4 598 113 38 47 237 0 2 298 chain 6826 chr10 135534747 + 85305233 85305315 L1PB2 3958 - 120 202 178745 82 chain 157272 chr10 135534747 + 85387321 85389067 L1PA3long 6157 + 4382 6142 23691 78 0 3 181 0 5 393 0 1 780 0 1 274 0 4 40 chain 4739 chr10 135534747 + 85415128 85415296 L1MA4 2864 - 55 193 198028 41 5 3 25 82 54 15 chain 4862 chr10 135534747 + 85462015 85462489 MER34A1 583 + 13 522 196660 53 272 303 5 0 2 4 1 0 13 97 101 24 1 0 4 chain 52654 chr10 135534747 + 85476816 85477404 L1PA4 6152 - 1 590 57212 338 0 1 250 chain 37154 chr10 135534747 + 85478068 85478465 L1HS 6032 + 5635 6032 73307 397 chain 422066 chr10 135534747 + 85501961 85507073 L1P2 5180 - 2 5167 9486 4 1 0 38 1 0 47 1 0 1005 0 18 136 12 7 233 2 0 169 1 0 1202 2 0 987 0 14 60 0 8 163 0 3 129 0 25 24 0 3 58 0 1 50 2 1 6 1 0 272 1 0 8 1 0 260 1 0 96 2 1 137 chain 19679 chr10 135534747 + 85511346 85511641 THE1C-int 1605 + 534 822 128174 80 0 1 37 7 8 4 1 0 16 10 7 65 5 0 70 chain 19885 chr10 135534747 + 85521309 85521678 THE1D 372 + 0 372 127533 54 9 0 61 13 17 34 59 61 11 2 8 126 chain 8562 chr10 135534747 + 85521683 85521786 LTR47A 437 - 35 138 167953 103 chain 3382 chr10 135534747 + 85524252 85524293 L1MB3 1562 + 1444 1485 217429 41 chain 19970 chr10 135534747 + 85533032 85533368 THE1B 368 - 0 368 127236 49 5 13 10 1 0 53 40 50 24 1 0 61 0 1 40 8 23 44 chain 540217 chr10 135534747 + 85540816 85546841 L1PA3long 6157 - 0 6157 2786 4 0 1 1380 0 1 94 7 6 231 0 1 161 1 0 986 0 1 120 0 1 1897 0 1 366 10 138 26 1 0 589 0 1 152 chain 44755 chr10 135534747 + 85554824 85555485 L1PA13 3608 + 2831 3487 63327 101 0 5 195 2 1 26 2 1 22 0 3 89 2 0 61 1 0 51 1 0 9 3 1 37 19 15 20 1 0 19 chain 38341 chr10 135534747 + 85560798 85561326 MLT2A2 560 - 8 559 71665 47 1 0 5 0 1 9 0 1 16 5 6 54 13 25 78 0 8 98 0 1 202 chain 28340 chr10 135534747 + 85601508 85601821 AluYa5 310 - 1 310 91795 294 4 0 15 chain 171949 chr10 135534747 + 85604359 85606923 L1PA7 6471 - 18 2098 21820 132 486 0 12 1 2 30 0 1 573 3 2 531 0 3 5 15 12 571 0 1 4 1 0 85 1 2 114 chain 17842 chr10 135534747 + 85604513 85604722 L1PA7 6471 - 173 383 133269 22 0 1 187 chain 7692 chr10 135534747 + 85604873 85604976 L1PA7 6471 - 48 150 172977 66 1 0 36 chain 16882 chr10 135534747 + 85626229 85626407 AluYb8 318 + 140 318 135888 178 chain 21837 chr10 135534747 + 85642028 85642341 L1PA8 5853 - 0 306 120866 93 1 0 19 2 1 39 9 8 14 1 0 71 2 0 44 1 0 17 chain 19639 chr10 135534747 + 85644460 85644829 THE1B 368 - 0 368 128286 14 11 12 35 13 1 53 66 76 8 1 0 55 0 1 113 chain 12472 chr10 135534747 + 85648041 85648245 L1MA5A 2387 + 2042 2232 150367 65 1 0 10 0 1 38 2 0 31 10 1 24 8 5 15 chain 136830 chr10 135534747 + 85658066 85659579 L1PA3long 6157 - 0 1513 26675 625 0 1 147 1 0 740 chain 302064 chr10 135534747 + 85659583 85662963 L1PA3long 6157 + 2789 6157 13319 281 9 0 871 1 0 697 0 3 824 1 0 66 0 1 366 1 0 112 4 5 135 5 0 7 chain 24699 chr10 135534747 + 85693452 85693776 AluY 311 + 9 306 106442 109 4 0 117 15 2 62 10 0 7 chain 30548 chr10 135534747 + 85730988 85731388 MLT2A1 477 - 84 477 83343 8 6 0 181 0 1 23 14 12 168 chain 467999 chr10 135534747 + 85731396 85737019 HERVL-int 5654 - 8 5654 8109 213 4 0 659 1 7 10 5 0 1247 0 4 294 4 5 228 0 1 235 0 1 210 0 1 321 0 1 118 1 2 139 0 1 187 3 10 104 10 0 285 0 13 537 0 1 326 5 8 142 0 1 335 chain 34387 chr10 135534747 + 85737019 85737535 MLT2A1 477 - 0 473 77084 37 5 1 51 47 9 175 0 1 21 1 2 10 8 5 161 chain 8987 chr10 135534747 + 85767078 85767207 L1PA8 5853 - 0 127 165675 93 7 6 13 2 1 14 chain 27253 chr10 135534747 + 85769732 85770099 THE1B 368 - 0 368 95426 131 6 5 18 1 5 9 1 0 31 1 0 169 chain 530248 chr10 135534747 + 85779379 85786122 L1PA7 6471 + 0 6469 4160 124 1 2 204 0 3 70 0 2 19 21 22 140 8 17 255 15 15 64 21 21 603 1 0 599 0 5 144 1 3 329 1 0 314 0 2 571 4 5 233 1 9 61 1 0 125 0 4 36 4 1 74 0 1 21 309 0 573 0 4 947 2 0 584 1 0 212 0 1 50 chain 7910 chr10 135534747 + 85800252 85800354 MER4D1 891 - 699 807 171588 7 0 6 95 chain 49967 chr10 135534747 + 85818643 85819280 PABL_A 660 + 0 659 59045 56 0 4 21 0 9 115 0 1 11 1 5 286 0 2 72 0 2 75 chain 5369 chr10 135534747 + 85820814 85820881 LTR41 747 + 665 732 191314 67 chain 20892 chr10 135534747 + 85824776 85825107 THE1B 368 - 31 368 124309 34 1 0 46 50 60 28 1 0 40 1 0 30 1 0 99 chain 203139 chr10 135534747 + 85830364 85832585 L1PA3long 6157 - 0 2244 18982 241 0 23 1980 chain 3468 chr10 135534747 + 85846680 85846720 MER41B 635 - 84 124 215842 40 chain 12818 chr10 135534747 + 85854703 85854864 THE1C 375 - 211 375 148986 32 0 3 129 chain 41155 chr10 135534747 + 85865891 85866397 MLT2A2 560 - 55 560 67707 7 2 0 435 0 1 62 chain 37464 chr10 135534747 + 85868200 85868666 LTR2 463 + 0 463 72871 88 4 0 274 12 13 88 chain 523020 chr10 135534747 + 85869423 85876478 HERVE_a-int 7009 + 141 7008 4862 15 3 0 29 1 0 1 1 0 73 2 0 6 3 1 24 1 0 4 1 0 7 1 0 8 1 0 14 15 10 4 1 0 7 1 0 5 1 0 9 2 0 20 28 0 35 4 2 24 1 0 44 1 0 21 1 0 54 1 0 132 1 0 12 1 0 11 6 5 33 1 0 10 1 0 55 2 0 23 16 15 56 1 0 26 10 8 72 3 2 28 5 4 40 2 0 14 1 0 53 1 0 20 1 0 15 2 1 5 1 0 12 4 0 23 1 0 3 1 0 16 2 1 20 2 1 5 1 0 7 1 0 10 1 0 5 1 0 5 1 0 57 2 0 57 1 0 10 14 13 16 2 1 89 4 0 26 1 0 18 1 0 20 2 1 10 1 0 14 21 18 20 0 5 75 1 0 62 2 1 6 3 0 29 7 5 36 2 1 44 1 0 24 1 0 16 1 0 20 7 6 10 1 0 94 2 1 25 6 4 29 14 8 17 7 5 8 1 0 143 2 1 14 1 0 38 1 0 167 2 1 352 0 10 43 1 0 87 1 0 492 1 0 159 0 1 959 0 2 604 0 2 31 9 0 47 0 1 64 1 0 36 1 0 68 7 6 8 1 0 41 1 0 23 1 0 31 0 1 54 1 0 13 2 1 257 2 0 102 1 0 13 1 0 5 1 0 56 3 1 20 1 0 12 2 1 76 5 3 138 1 0 43 1 0 31 1 0 10 1 0 16 1 0 5 2 0 7 1 0 37 1 0 21 5 4 43 1 0 4 1 0 24 10 8 55 12 7 29 3 0 54 3 1 26 1 0 31 1 0 6 3 1 12 1 0 25 2 0 34 4 2 15 32 24 25 2 0 6 2 1 10 chain 37511 chr10 135534747 + 85876487 85876949 LTR2 463 + 0 463 72798 362 12 13 88 chain 37634 chr10 135534747 + 85876976 85877451 LTR10F 562 + 0 562 72643 162 1 88 312 chain 2940 chr10 135534747 + 85878143 85878177 MER21C 908 - 81 115 226341 34 chain 39458 chr10 135534747 + 85878303 85878804 LTR10F 562 - 0 562 70075 34 1 0 20 1 4 254 0 59 191 chain 204386 chr10 135534747 + 85879102 85881867 HERVIP10FH-int 2884 - 60 2735 18897 35 52 44 40 1 0 66 1 0 326 3 0 39 1 0 24 1 0 200 1 0 155 9 8 104 34 22 38 21 19 35 20 3 14 7 1 12 26 12 12 5 2 18 4 0 126 7 2 61 1 0 7 1 0 11 3 0 8 4 1 777 0 1 29 0 1 172 2 0 185 2 1 5 1 0 59 chain 41913 chr10 135534747 + 85885941 85886547 LTR10F 562 - 0 562 66741 61 0 1 176 63 15 27 1 2 6 1 0 39 5 8 227 chain 20264 chr10 135534747 + 85922082 85922320 AluY 311 + 26 266 126333 99 1 3 138 chain 23397 chr10 135534747 + 85922929 85923263 LTR2 463 + 107 463 113663 55 8 29 72 0 1 4 1 0 94 12 13 88 chain 10295 chr10 135534747 + 85923263 85923407 MER4D1 891 + 737 883 159158 79 6 5 41 0 3 18 chain 36898 chr10 135534747 + 85926941 85927425 LTR2B 499 - 0 499 73663 182 1 0 8 0 1 175 3 22 41 3 0 56 1 0 14 chain 178843 chr10 135534747 + 85928258 85930512 Harlequin-int 5206 - 2015 5071 21090 432 11 17 98 0 1 158 2 1 207 29 19 293 6 12 288 0 778 405 2 0 119 5 7 9 0 25 14 0 2 17 0 1 65 2 1 80 5 0 7 chain 37033 chr10 135534747 + 85931742 85932221 LTR2B 499 - 0 499 73478 182 1 0 8 0 1 175 3 22 95 1 2 14 chain 108511 chr10 135534747 + 85939635 85940905 SVA_B 1603 - 0 1597 34557 516 0 358 685 33 5 18 3 0 15 chain 32669 chr10 135534747 + 86014221 86014689 MER51D 577 - 0 444 79735 40 2 1 28 2 1 9 18 0 24 2 0 71 1 0 6 1 0 5 0 1 75 1 0 183 chain 8087 chr10 135534747 + 86020156 86020258 L1PB4 2604 - 1015 1118 170557 92 0 1 10 chain 555643 chr10 135534747 + 86039723 86045762 L1PA2 6032 + 0 6028 757 1774 20 0 1858 7 15 1453 0 1 927 chain 15498 chr10 135534747 + 86063862 86064061 L1PA16 3655 - 60 256 139908 18 3 0 178 chain 118426 chr10 135534747 + 86082672 86084228 HERVL-int 5654 + 4128 5654 31637 545 66 57 59 16 0 642 4 0 206 1 0 17 chain 44823 chr10 135534747 + 86084228 86084773 MLT2A2 560 + 0 560 63264 17 0 4 381 0 11 147 chain 24813 chr10 135534747 + 86105831 86106111 AluSp 311 - 23 303 105819 280 chain 138268 chr10 135534747 + 86106552 86108255 SVA_C 1631 - 16 1603 26441 457 0 3 112 1 0 25 1 0 7 10 5 4 1 0 52 1 0 40 1 0 58 4 0 6 85 0 107 0 4 526 0 1 156 25 0 24 chain 2924 chr10 135534747 + 86107332 86107367 SVA_C 1631 - 697 732 160462 35 chain 2263 chr10 135534747 + 86107367 86107417 SVA_C 1631 - 774 824 153378 50 chain 26048 chr10 135534747 + 86138188 86138490 AluSq10 312 - 10 312 99835 302 chain 10651 chr10 135534747 + 86158987 86159156 L1PB4 2604 - 52 223 157602 87 17 21 58 2 0 5 chain 329603 chr10 135534747 + 86170112 86175085 L1PA11 4918 - 351 4910 12218 13 1 0 15 45 32 19 1 0 16 2 0 78 2 1 46 24 18 79 1 0 63 0 6 38 0 1 41 8 3 207 20 22 5 2 0 90 76 40 74 1 0 95 9 6 108 20 16 577 5 4 12 0 22 106 2 0 96 2 1 28 2 0 42 3 0 97 348 0 186 0 4 27 3 4 21 20 11 245 0 3 134 1 2 95 1 0 242 4 1 126 2 1 28 0 1 235 1 0 91 3 6 9 3 0 234 2 1 15 0 1 113 0 3 344 0 3 45 18 14 18 1 2 5 1 0 52 2 0 15 1 0 34 4 1 36 2 0 26 1 0 8 chain 27328 chr10 135534747 + 86172286 86172626 LTR14A 344 - 0 344 95183 37 0 1 135 0 4 144 7 6 17 chain 7469 chr10 135534747 + 86192220 86192309 L1PA16 3655 - 115 204 174353 89 chain 118998 chr10 135534747 + 86202480 86203909 L1PA7 6471 + 5044 6466 31412 92 24 17 469 0 2 74 0 2 97 0 1 531 0 1 124 6 0 12 chain 22122 chr10 135534747 + 86209334 86209613 AluSp 311 + 8 292 119688 17 2 0 138 5 12 117 chain 21923 chr10 135534747 + 86242894 86243165 AluSp 311 + 28 298 120532 104 1 0 166 chain 535332 chr10 135534747 + 86245519 86251632 L1PA5 6144 - 18 6139 3545 742 0 1 1035 0 4 283 0 1 779 1 2 105 1 0 22 0 2 424 0 1 409 4 3 2169 14 0 10 1 15 114 chain 60533 chr10 135534747 + 86285126 86285885 LTR17 781 - 0 781 52560 31 1 23 383 20 17 18 0 2 68 0 1 238 chain 179049 chr10 135534747 + 86286199 86288441 HERV17-int 4347 - 0 4335 21068 182 1 0 4 0 1 213 12 17 168 2 0 27 0 1672 276 1 0 190 0 2 55 1 0 4 5 6 58 1 2 123 2 1 458 3 0 123 0 430 64 12 7 125 1 0 24 1 0 6 7 6 25 1 0 51 1 0 15 chain 61051 chr10 135534747 + 86290073 86290825 LTR17 781 - 7 781 52308 24 0 22 395 7 6 93 0 1 233 chain 28396 chr10 135534747 + 86292791 86293207 THE1B-int 1605 + 0 370 91602 13 1 3 99 54 0 159 0 6 90 chain 5070 chr10 135534747 + 86295208 86295270 THE1B 368 + 244 306 194430 62 chain 19820 chr10 135534747 + 86299295 86299586 THE1B 368 - 0 301 127751 119 41 51 131 chain 10862 chr10 135534747 + 86314314 86314433 L1PA4 6152 + 6033 6152 156733 119 chain 63101 chr10 135534747 + 86324962 86325716 LTR17 781 - 0 781 51399 31 0 22 400 0 1 47 6 0 152 0 9 62 0 1 56 chain 12721 chr10 135534747 + 86331422 86331806 LTR12C 1709 + 773 1037 149367 64 161 41 39 0 37 50 43 6 27 chain 597 chr10 135534747 + 86331486 86331518 LTR12C 1709 + 877 909 208917 32 chain 763 chr10 135534747 + 86331578 86331611 LTR12C 1709 + 650 683 192280 33 chain 25745 chr10 135534747 + 86371630 86371929 AluSp 311 - 12 311 101103 299 chain 29162 chr10 135534747 + 86383820 86384124 AluYb8 318 - 14 318 88244 304 chain 14333 chr10 135534747 + 86386219 86386384 MLT2A2 560 + 0 165 143452 165 chain 8138 chr10 135534747 + 86395998 86396106 L1PA16 3655 - 68 173 170295 10 3 0 95 chain 419914 chr10 135534747 + 86397000 86402773 L1PA8 5853 + 308 5853 9534 91 0 1 245 0 6 396 2 0 137 5 107 71 0 12 190 1 0 4 6 7 451 8 1 30 1 0 329 0 4 104 0 2 34 330 0 182 10 19 72 1 2 7 0 1 75 1 0 85 0 1 15 2 1 224 11 0 173 1 0 504 17 20 110 35 39 274 0 1 35 17 1 84 20 21 527 9 6 74 1 3 478 1 0 44 2 0 74 1 0 7 1 0 9 0 2 38 4 3 19 2 1 92 chain 467580 chr10 135534747 + 86405157 86411309 L1PA7 6471 - 10 5915 8126 118 0 1 14 1 0 274 0 2 328 0 1 13 0 1 93 0 2 635 1 0 27 2 0 139 260 0 188 1 0 10 0 3 985 7 0 21 10 8 101 2 1 251 4 0 8 1 5 305 1 2 54 0 1 137 1 2 98 0 2 808 10 11 42 2 12 156 0 1 5 1 3 49 1 0 180 19 18 66 13 12 151 0 1 211 3 7 5 4 0 114 15 0 7 0 15 86 0 1 114 chain 11634 chr10 135534747 + 86412161 86412352 L1PB4 2604 - 32 218 153754 18 12 11 93 13 9 55 chain 5899 chr10 135534747 + 86430049 86430147 MER33 330 - 41 138 186198 5 2 0 59 7 8 25 chain 4001 chr10 135534747 + 86452980 86453507 L1M4 1397 + 487 927 207370 22 378 296 7 3 0 13 57 55 47 chain 5756 chr10 135534747 + 86470586 86470661 MER75A 77 + 2 76 187592 57 1 0 17 chain 29890 chr10 135534747 + 86476040 86476352 AluYb8 318 - 6 318 85135 312 chain 471441 chr10 135534747 + 86486908 86492978 L1PA4 6152 + 10 6143 7990 23 0 10 29 1 2 53 0 14 68 0 1 11 6 5 259 2 1 35 7 14 80 1 2 344 59 34 57 33 33 62 52 43 22 0 1 168 10 4 309 3 9 602 12 3 12 0 3 371 0 10 9 16 0 470 1 0 108 0 1 297 1 2 469 67 0 575 0 1 4 5 3 71 3 0 587 0 146 145 0 1 60 1 0 490 chain 54862 chr10 135534747 + 86492981 86493654 L1PA6 6164 + 5488 6162 55789 411 2 1 251 0 2 9 chain 244609 chr10 135534747 + 86506631 86509319 L1PA3long 6157 + 3466 6157 16525 994 0 3 1694 chain 548883 chr10 135534747 + 86516634 86522638 L1PA2 6032 - 16 6029 1593 711 0 1 1432 0 3 3133 1 0 22 0 7 451 1 0 253 chain 537423 chr10 135534747 + 86532822 86539012 L1PA3long 6157 - 8 6153 3251 716 0 1 1805 191 0 673 0 16 241 1 0 543 0 2 233 2 0 682 0 1 327 0 128 625 2 3 149 chain 6025 chr10 135534747 + 86566656 86566728 LTR8 732 - 0 72 185018 72 chain 19240 chr10 135534747 + 86569558 86569771 L1PA3long 6157 - 0 213 129413 213 chain 3375 chr10 135534747 + 86574762 86574798 L1PA15 4387 + 2405 2441 217587 36 chain 3662 chr10 135534747 + 86602017 86602057 MLT2B1 522 + 482 522 212550 40 chain 124980 chr10 135534747 + 86617948 86619315 L1PA3long 6157 - 5 1373 29398 1336 0 1 31 chain 5606 chr10 135534747 + 86623025 86623112 MER5A1 166 - 36 124 189030 26 11 12 50 chain 26048 chr10 135534747 + 86636881 86637312 MER4A1 472 + 2 433 99834 12 0 2 179 36 57 12 31 11 95 1 0 30 11 9 24 chain 21480 chr10 135534747 + 86640613 86640876 L1PA7 6471 - 7 270 122219 263 chain 284269 chr10 135534747 + 86641939 86645450 HERVL-int 5654 - 7 3553 14399 16 0 1 168 0 8 23 0 1 32 1 11 168 4 5 710 0 1 603 9 1 398 0 9 21 0 2 108 1 2 333 4 0 615 1 14 296 chain 26548 chr10 135534747 + 86649711 86650028 AluYf4 310 + 0 310 97850 123 11 5 75 2 1 106 chain 528606 chr10 135534747 + 86731713 86737854 L1PA5 6144 + 0 6134 4344 951 3 4 54 1 0 128 0 1 26 14 5 86 0 1 696 0 1 100 0 1 250 0 1 720 1 0 185 0 2 6 3 0 24 0 1 1414 0 1 852 2 0 521 1 0 103 chain 10088 chr10 135534747 + 86738888 86739106 L1MA3 4352 - 0 218 160141 22 8 2 14 34 36 20 2 0 15 8 9 29 0 6 20 1 0 45 chain 13396 chr10 135534747 + 86739509 86739716 L1PB2 3958 - 122 320 146738 61 1 0 11 13 11 56 5 0 18 1 0 41 chain 437514 chr10 135534747 + 86789904 86795499 HERVL-int 5654 + 0 5654 9111 239 1 8 180 0 3 23 35 9 530 14 6 132 0 1 93 0 1 659 29 26 107 0 1 4 1 0 375 0 66 19 8 13 38 0 1 230 10 14 232 11 12 239 9 10 1407 19 21 578 0 3 64 4 8 102 3 0 200 chain 29790 chr10 135534747 + 86795499 86795888 MLT2A1 477 + 0 403 85511 169 4 1 12 0 1 19 0 1 119 6 22 51 1 0 8 chain 3257 chr10 135534747 + 86796022 86796060 L1PA16 3655 + 3538 3576 219839 38 chain 13830 chr10 135534747 + 86799207 86799488 L1PA15 4387 - 21 283 145133 10 1 0 25 5 0 16 3 1 32 0 1 11 20 18 35 1 0 10 4 0 13 4 0 21 1 0 4 3 4 34 1 0 27 chain 83156 chr10 135534747 + 86815272 86816330 MER11B 1079 + 8 1064 42273 61 0 2 509 14 15 122 0 3 21 10 0 27 4 6 105 1 2 168 2 1 14 chain 7501 chr10 135534747 + 86817603 86817715 MLT2B4 540 - 427 540 174152 17 1 0 5 0 1 47 4 5 38 chain 9145 chr10 135534747 + 86829287 86829396 L1PA6 6164 - 245 354 164832 109 chain 105433 chr10 135534747 + 86833947 86835122 L1PA3long 6157 - 2178 3370 35389 361 0 1 663 0 16 151 chain 196753 chr10 135534747 + 86835124 86837288 L1PA3long 6157 + 3992 6157 19445 1778 0 1 386 chain 18013 chr10 135534747 + 86861268 86861501 L1PA7 6471 + 6228 6461 132820 84 3 4 133 1 0 12 chain 553764 chr10 135534747 + 86885502 86891625 L1PA3long 6157 + 6 6146 977 1443 0 1 878 1 0 887 1 0 6 3 0 587 0 1 744 0 18 1412 0 2 161 chain 120697 chr10 135534747 + 86900972 86902399 LTR12C 1709 + 0 1709 30799 650 0 278 183 1 0 6 3 1 106 0 4 118 10 12 81 0 1 269 chain 29327 chr10 135534747 + 86903984 86904339 THE1B 368 + 0 367 87404 44 0 15 110 1 0 26 2 0 172 chain 3164 chr10 135534747 + 86915695 86915892 LTR49-int 1717 + 194 512 221691 26 104 226 14 28 27 25 chain 95854 chr10 135534747 + 86915923 86917180 HSMAR1 1287 + 13 1286 37859 151 0 1 105 0 3 293 1 6 343 9 11 181 12 15 32 0 2 130 chain 28425 chr10 135534747 + 86925911 86926207 AluYb8 318 - 22 318 91490 296 chain 44353 chr10 135534747 + 86944061 86944615 MER41A 554 - 0 554 63749 554 chain 134418 chr10 135534747 + 86944624 86946421 MER41-int 2638 - 2 1813 27130 395 13 15 194 2 0 8 1 3 13 0 16 73 1 0 10 2 0 15 2 1 18 2 0 18 2 0 529 0 1 124 11 14 12 1 0 161 10 11 180 chain 45392 chr10 135534747 + 86950029 86950583 MER41A 554 - 0 554 62607 554 chain 30296 chr10 135534747 + 86966906 86967224 AluYb8 318 + 0 318 83925 318 chain 120756 chr10 135534747 + 86977559 86979164 THE1A-int 1579 + 0 1579 30777 305 5 6 42 0 1 344 2 1 156 52 0 207 0 20 11 0 1 77 7 8 200 0 1 94 4 5 90 0 1 9 chain 513912 chr10 135534747 + 87034161 87040597 L1PA7 6471 - 1 6471 5788 154 0 1 248 4 5 299 0 1 133 8 5 282 0 1 389 2 0 227 5 6 43 0 1 290 0 14 369 1 0 166 5 0 312 1 0 27 15 13 446 1 0 295 5 8 40 2 1 60 0 2 13 0 10 25 0 1 58 8 10 406 13 11 134 0 2 59 6 7 142 1 0 355 2 0 6 9 14 163 1 5 225 0 1 83 4 0 6 0 4 14 9 10 15 1 0 226 0 1 155 0 16 218 17 5 24 1 0 208 chain 71677 chr10 135534747 + 87047573 87048356 L1PA3long 6157 + 5370 6153 47614 783 chain 23246 chr10 135534747 + 87058736 87059009 L1PA5 6144 - 13 292 114461 156 0 6 117 chain 4763 chr10 135534747 + 87069934 87069993 L1MCa 1829 + 1461 1519 197776 23 1 0 35 chain 3407 chr10 135534747 + 87073964 87074003 L1MA4 2864 + 2766 2805 216956 39 chain 385178 chr10 135534747 + 87084127 87089536 L1PB1 5432 - 23 5405 10603 5 1 0 13 1 0 21 1 0 20 65 49 5 3 0 16 1 0 43 1 0 16 2 1 53 2 0 7 54 45 10 1 2 5 0 4 41 2 1 5 0 1 424 6 7 500 2 0 5 5 7 158 0 1 158 0 1 53 2 0 138 16 18 271 2 0 73 0 1 133 2 1 118 2 1 136 4 0 144 2 0 6 0 2 70 11 15 110 9 0 116 0 4 51 0 1 62 5 6 253 0 3 5 9 6 374 8 13 175 46 17 7 2 0 7 1 0 486 1 2 5 1 0 61 1 20 118 0 1 40 10 12 66 29 31 9 1 0 89 0 1 49 1 0 205 5 15 129 9 10 19 chain 42046 chr10 135534747 + 87094556 87095261 L1MA1 4479 + 3448 4136 66563 46 0 1 16 2 0 156 0 1 47 1 0 24 18 16 74 10 9 7 2 0 8 0 1 5 2 0 81 15 12 7 1 0 40 15 16 27 4 0 33 12 11 21 2 0 29 chain 34528 chr10 135534747 + 87113011 87113406 L1PA4 6152 + 5755 6151 76865 253 0 1 142 chain 568267 chr10 135534747 + 87115262 87121294 L1HS 6032 + 0 6032 16 6032 chain 21886 chr10 135534747 + 87128266 87128548 AluSg7 307 - 12 296 120683 15 10 13 135 1 0 121 chain 9687 chr10 135534747 + 87139839 87139948 MLT2A1 477 + 0 109 162168 109 chain 32875 chr10 135534747 + 87143772 87144237 L1PA14 3548 + 558 1038 79406 99 8 5 49 0 3 132 8 0 20 3 1 67 4 29 75 chain 21223 chr10 135534747 + 87152862 87153100 L1PA4 6152 - 161 398 123127 82 1 0 155 chain 15161 chr10 135534747 + 87153100 87153264 L1PA4 6152 + 5987 6151 140875 164 chain 39642 chr10 135534747 + 87164388 87164816 L1PA2 6032 - 0 428 69832 428 chain 74392 chr10 135534747 + 87169886 87170924 MER11A 1151 + 7 1143 46320 38 10 109 24 17 0 8 0 1 41 1 0 66 4 0 146 5 6 92 0 1 140 0 1 143 6 39 21 18 0 37 0 1 60 6 7 155 chain 232410 chr10 135534747 + 87175017 87177761 L1PA4 6152 + 3505 6152 17180 435 0 1 50 0 3 293 0 2 190 0 1 201 123 0 736 0 20 577 1 0 138 chain 15625 chr10 135534747 + 87188043 87188282 L1PA8 5853 - 0 229 139505 93 1 0 19 12 11 51 2 1 29 7 0 25 chain 33619 chr10 135534747 + 87232023 87232406 L1PA5 6144 + 5761 6144 78212 383 chain 514148 chr10 135534747 + 87258812 87264959 L1PA6 6164 - 5 6164 5764 117 0 2 213 0 1 1177 4 0 279 0 1 251 0 1 222 11 13 601 0 2 429 6 4 484 0 1 33 26 0 15 0 22 464 0 1 6 0 3 381 8 13 573 0 1 339 2 1 164 0 1 4 8 7 303 1 4 26 chain 155136 chr10 135534747 + 87276676 87278384 L1PA3long 6157 - 2 1710 23965 1708 chain 125639 chr10 135534747 + 87278384 87279771 L1PA3long 6157 + 3072 4456 29178 86 3 0 19 1 0 6 0 1 1272 chain 12796 chr10 135534747 + 87321062 87321268 L1PA16 3655 + 3390 3589 149068 90 11 8 13 6 5 72 3 0 11 chain 24165 chr10 135534747 + 87343107 87343398 AluSp 311 + 20 311 109398 291 chain 22717 chr10 135534747 + 87399355 87399623 AluSp 311 + 7 277 116999 229 1 3 38 chain 19247 chr10 135534747 + 87463591 87463807 L1PA4 6152 - 4107 4324 128374 75 0 1 141 chain 358569 chr10 135534747 + 87463807 87467872 L1PA4 6152 + 2067 6143 11390 84 0 1 1158 0 12 341 0 1 129 9 5 681 0 1 821 2 0 25 2 1 72 0 3 741 chain 22343 chr10 135534747 + 87467898 87468174 AluY 311 + 20 296 118728 9 1 0 96 2 3 168 chain 126308 chr10 135534747 + 87477381 87479133 THE1A-int 1579 - 7 1579 29005 287 1 2 15 0 1 15 0 3 254 194 5 548 5 7 414 7 9 12 chain 10450 chr10 135534747 + 87477968 87478094 THE1A-int 1579 - 598 724 158492 126 chain 123729 chr10 135534747 + 87504140 87505492 L1PA2 6032 + 4680 6032 29802 509 0 1 19 1 0 823 chain 555037 chr10 135534747 + 87529097 87535244 L1PA3long 6157 + 4 6157 822 196 0 1 867 0 2 519 6 9 759 0 1 3776 1 0 23 chain 14998 chr10 135534747 + 87576766 87577020 L1PA15 4387 - 36 273 141325 22 5 0 14 3 1 44 6 3 50 14 9 23 1 0 54 1 0 17 chain 9676 chr10 135534747 + 87580174 87580298 MER85 139 + 5 139 162212 90 0 10 34 chain 131830 chr10 135534747 + 87581480 87582955 L1PA5 6144 + 4669 6144 27668 1475 chain 44017 chr10 135534747 + 87629758 87630298 MLT2A2 560 + 0 560 64185 369 0 1 36 0 19 135 chain 544728 chr10 135534747 + 87636375 87642537 L1PA4 6152 + 1 6149 2105 199 0 1 379 2 1 253 17 0 121 1 0 279 1 2 4036 0 1 106 0 1 437 0 1 331 chain 4816 chr10 135534747 + 87718293 87718346 MLT2B2 565 + 70 123 197166 53 chain 151944 chr10 135534747 + 87723719 87725553 L1PA7 6471 + 4634 6470 24342 20 0 2 291 19 14 299 1 2 4 1 0 298 0 1 49 0 3 219 0 1 633 chain 45650 chr10 135534747 + 87789104 87789840 HUERS-P3b-int 2065 + 1323 2031 62355 125 0 7 13 1 3 44 24 2 84 2 0 13 1 0 12 0 1 13 1 0 17 0 3 5 12 9 54 3 1 72 2 0 19 4 1 59 24 20 41 1 0 90 chain 54494 chr10 135534747 + 87791955 87792598 SVA_B 1603 + 878 1603 56029 13 1 0 15 0 1 4 10 92 600 chain 345954 chr10 135534747 + 87851461 87856093 L1PB1 5432 + 19 5424 11728 29 7 8 278 0 2 40 0 1 29 1 0 138 1 0 64 0 8 207 7 755 23 1 7 404 0 5 357 0 4 56 0 12 57 0 7 67 0 5 236 0 5 19 1 0 38 0 1 177 0 1 192 1 0 512 0 1 23 0 8 167 6 1 256 19 9 28 10 11 362 5 0 78 2 1 96 14 11 287 2 3 9 1 13 11 1 0 9 16 11 11 3 1 47 5 4 16 1 0 44 1 0 15 1 0 4 19 9 18 23 21 22 1 0 21 1 0 13 1 0 16 1 0 4 chain 3918 chr10 135534747 + 87862447 87862492 THE1B 368 + 261 306 208576 45 chain 45668 chr10 135534747 + 87867263 87868031 LTR1 825 + 28 825 62337 37 1 0 4 0 1 73 2 1 66 168 183 14 0 13 189 8 9 117 0 1 89 chain 3869 chr10 135534747 + 87877011 87877099 HAL1-2a_MD 234 + 34 114 209325 13 7 13 29 15 1 24 chain 6993 chr10 135534747 + 87877466 87877551 L1PB1 5432 + 4713 4798 177520 85 chain 22756 chr10 135534747 + 87877551 87877833 L1PB1 5432 + 4806 5088 116798 282 chain 16377 chr10 135534747 + 87877890 87878225 L1PB1 5432 + 5114 5418 137266 24 1 0 6 1 0 14 5 1 9 2 0 52 3 1 16 2 1 37 7 6 15 1 0 4 2 0 9 8 0 15 14 11 11 2 0 24 1 0 21 1 0 13 1 0 14 chain 11264 chr10 135534747 + 87925872 87925999 L1PA5 6144 - 0 127 155176 127 chain 51257 chr10 135534747 + 87933335 87933916 L1PA3long 6157 - 0 581 58153 7 0 1 331 2 1 241 chain 81993 chr10 135534747 + 87933922 87934818 L1PA3long 6157 + 4669 5566 42761 436 0 1 460 chain 28581 chr10 135534747 + 87967381 87967686 AluYg6 310 - 5 310 90819 305 chain 63978 chr10 135534747 + 88010327 88011120 SVA_B 1603 + 816 1603 51015 8 1 0 14 0 40 98 1 0 108 40 0 366 4 0 153 chain 189193 chr10 135534747 + 88032671 88034743 L1PA3long 6157 - 0 2075 20126 856 0 1 492 0 2 724 chain 9048 chr10 135534747 + 88059289 88059397 L1PA5 6144 + 5851 5959 165324 108 chain 5233 chr10 135534747 + 88062597 88062678 MER5A1 166 + 51 135 192701 31 6 7 6 0 2 38 chain 3907 chr10 135534747 + 88095097 88095222 MER103C 291 + 39 167 208755 16 66 69 43 chain 11819 chr10 135534747 + 88139837 88140046 L1MB3 1562 + 1370 1552 152947 51 1 0 4 40 15 83 1 0 29 chain 24254 chr10 135534747 + 88143256 88143535 AluY 311 + 17 295 108917 190 2 1 87 chain 29093 chr10 135534747 + 88148504 88148814 AluYa5 310 - 0 310 88581 310 chain 7856 chr10 135534747 + 88167622 88167759 MLT1A1 405 - 48 180 171961 84 1 18 19 22 0 11 chain 113462 chr10 135534747 + 88214116 88215453 SVA_B 1603 + 0 1603 33234 21 5 9 12 6 5 146 0 144 262 0 37 188 0 82 55 5 1 14 1 0 39 2 1 154 0 5 271 2 3 154 chain 25937 chr10 135534747 + 88220473 88220769 AluSp 311 - 15 311 100264 296 chain 18888 chr10 135534747 + 88244281 88244674 Tigger3b 1229 + 729 1202 130400 36 25 31 32 8 18 15 22 35 22 1 0 28 5 14 22 1 11 55 14 31 60 8 21 6 0 3 33 chain 6999 chr10 135534747 + 88248202 88248296 U6 107 + 0 97 177462 42 1 4 51 chain 31115 chr10 135534747 + 88297965 88298513 LTR12F 595 - 0 595 82314 17 1 15 41 1 0 130 1 0 27 0 1 9 88 0 50 1 0 58 1 131 12 23 16 88 chain 24496 chr10 135534747 + 88318643 88319030 THE1B 368 - 0 368 107566 49 5 13 138 1 0 74 4 0 25 41 13 6 0 6 44 chain 27764 chr10 135534747 + 88321003 88321446 LTR7B 505 - 9 505 93823 42 14 13 88 55 61 27 0 3 10 0 21 36 10 24 56 0 10 105 chain 201186 chr10 135534747 + 88322846 88325518 HERVH-int 3825 - 0 3026 19123 565 20 19 55 4 371 7 0 3 710 1 6 482 1 0 4 0 1 56 35 37 79 9 0 6 1 0 134 1 0 4 0 1 61 15 0 30 49 52 343 chain 23610 chr10 135534747 + 88326071 88326415 LTR7B 505 - 14 505 112520 37 14 13 85 4 78 21 22 86 53 0 10 108 chain 49397 chr10 135534747 + 88326787 88328112 MER4E1 777 - 0 748 59452 20 0 2 210 8 16 9 287 0 49 2 0 62 0 1 59 42 61 34 0 1 130 324 5 89 chain 40782 chr10 135534747 + 88328872 88329504 LTR8 732 - 0 716 68200 189 1 0 5 18 12 49 0 19 17 1 7 123 10 18 18 13 58 42 1 0 10 3 9 24 5 4 89 0 9 14 chain 32897 chr10 135534747 + 88330313 88331140 MER4A1 472 + 0 472 79377 139 14 18 27 311 0 31 75 27 230 chain 11531 chr10 135534747 + 88332193 88332320 L1PA4 6152 + 6016 6143 154181 127 chain 42234 chr10 135534747 + 88358529 88359065 MER41A 554 - 0 539 66357 176 0 1 105 0 1 64 0 1 161 0 1 4 6 5 20 chain 59567 chr10 135534747 + 88371468 88372201 LTR17 781 + 0 781 53073 110 0 5 179 0 2 31 1 0 40 3 1 333 1 45 35 chain 225147 chr10 135534747 + 88376903 88379397 L1PA4 6152 - 1 2499 17583 147 0 1 172 0 2 1415 0 1 760 chain 3344 chr10 135534747 + 88394776 88394813 LTR24B 570 - 0 37 218160 37 chain 24386 chr10 135534747 + 88488335 88488626 AluSg7 307 - 4 297 108158 45 0 1 125 0 1 121 chain 3460 chr10 135534747 + 88498469 88498511 MLT1K 546 + 504 546 215995 42 chain 10070 chr10 135534747 + 88521328 88521454 MER85 139 + 0 139 160222 60 0 3 26 0 10 40 chain 10487 chr10 135534747 + 88538441 88538653 L1MA5A 2387 - 100 298 158299 57 56 43 15 0 2 15 2 0 47 1 0 19 chain 20192 chr10 135534747 + 88554612 88554897 AluSp 311 - 17 301 126554 12 7 6 57 6 0 6 2 8 195 chain 6021 chr10 135534747 + 88575894 88576026 MER33 330 + 14 163 185045 14 1 0 13 0 1 44 31 0 10 2 50 17 chain 25212 chr10 135534747 + 88605483 88605766 AluY 311 + 11 295 103674 121 0 1 162 chain 88926 chr10 135534747 + 88613332 88614371 MER11C 1089 - 30 1089 40036 193 0 1 89 0 1 37 0 1 45 0 4 367 0 4 62 0 9 246 chain 35837 chr10 135534747 + 88624807 88625357 LTR7 482 + 0 482 75079 96 0 1 83 102 0 50 0 31 28 0 1 129 13 14 49 chain 3920 chr10 135534747 + 88624986 88625030 LTR7 482 + 129 173 193376 44 chain 24470 chr10 135534747 + 88643055 88643327 AluY 311 + 30 303 107702 96 0 1 176 chain 3333 chr10 135534747 + 88645307 88645344 MER3 215 - 131 168 218350 37 chain 12683 chr10 135534747 + 88649331 88649477 U1 164 + 4 151 149514 124 0 1 22 chain 27844 chr10 135534747 + 88666194 88666509 AluY 311 + 0 311 93544 130 4 0 181 chain 25563 chr10 135534747 + 88685478 88685748 AluYb8 318 - 13 283 101919 270 chain 76824 chr10 135534747 + 88712153 88713260 MER11A 1151 - 0 1151 45072 61 6 5 163 0 9 10 4 4 40 6 40 40 9 8 24 0 4 53 1 0 8 10 13 108 2 1 22 3 5 88 4 5 51 0 1 48 4 6 35 12 10 80 1 3 28 8 0 178 chain 7839 chr10 135534747 + 88733236 88733357 LTR26B 539 - 175 298 172082 54 2 1 46 5 8 14 chain 12259 chr10 135534747 + 88741140 88741296 PABL_B 668 - 221 380 151165 7 0 3 88 2 1 51 0 1 8 chain 64524 chr10 135534747 + 88744126 88744882 L1PA5 6144 - 8 775 50784 139 3 5 25 6 13 19 0 2 47 1 0 80 0 1 436 chain 12846 chr10 135534747 + 88772946 88773152 LTR47A 437 + 219 424 148866 4 1 0 31 6 0 32 15 21 117 chain 26106 chr10 135534747 + 88781097 88781432 LTR14A 344 + 0 344 99598 46 7 15 179 1 0 4 0 1 57 0 1 41 chain 3871 chr10 135534747 + 88790190 88790232 LTR12C 1709 - 991 1033 209305 42 chain 4852 chr10 135534747 + 88790373 88790433 LTR12C 1709 - 973 1033 196762 60 chain 2432 chr10 135534747 + 88790433 88790461 LTR12C 1709 - 673 701 206174 28 chain 3657 chr10 135534747 + 88790515 88790557 LTR12C 1709 - 549 591 212639 42 chain 33245 chr10 135534747 + 88792800 88793235 MER4A1 472 - 14 471 78812 183 35 57 217 chain 50836 chr10 135534747 + 88793430 88794936 L1PA13 3608 - 773 1500 58406 232 796 28 94 4 5 115 15 9 112 2 0 39 4 0 28 0 1 4 5 4 56 chain 33727 chr10 135534747 + 88793879 88794336 LTR2 463 + 2 463 78048 326 1 0 5 7 8 18 15 16 58 0 3 27 chain 34875 chr10 135534747 + 88800115 88800572 LTR2 463 - 1 463 76373 87 15 16 117 12 16 226 chain 6062 chr10 135534747 + 88810002 88810075 U3 216 + 0 73 184726 73 chain 171859 chr10 135534747 + 88839668 88841720 SVA_D 2077 + 0 2077 21833 53 0 8 700 40 0 147 2 0 10 0 36 26 74 0 54 1 4 95 1 0 127 1 0 43 0 98 364 1 0 295 1 0 17 chain 693 chr10 135534747 + 88840421 88840459 SVA_D 2077 + 684 722 199303 38 chain 6491 chr10 135534747 + 88840646 88840720 SVA_D 2077 + 1256 1334 81523 66 0 4 8 chain 13719 chr10 135534747 + 88882168 88882343 MER107 203 - 19 200 145544 16 3 9 156 chain 8445 chr10 135534747 + 88906355 88906473 MER30 238 + 124 238 168596 39 2 1 35 3 0 39 chain 6369 chr10 135534747 + 88942471 88942547 MLT1F1 559 - 131 207 182253 76 chain 3955 chr10 135534747 + 89003984 89004044 L1MB4 1306 + 811 865 208055 48 6 0 6 chain 9163 chr10 135534747 + 89005280 89005431 MSTB1 431 - 13 161 164747 78 30 27 43 chain 15379 chr10 135534747 + 89016652 89016946 Tigger3b 1229 + 55 353 140266 67 73 74 42 0 3 54 1 0 33 1 2 23 chain 43574 chr10 135534747 + 89023961 89024529 L1PA16 3655 - 82 647 64714 272 12 10 86 2 1 196 chain 13249 chr10 135534747 + 89024633 89024943 THE1B 368 + 13 339 147290 21 2 0 13 19 25 35 10 8 57 1 0 8 17 20 10 0 4 14 24 32 46 1 0 4 8 9 20 chain 250658 chr10 135534747 + 89031758 89035477 L1PA14 3548 + 90 3472 16201 58 4 0 69 1 0 20 2 1 30 2 0 29 8 6 805 1 0 13 29 33 338 1 0 4 0 1 139 0 12 152 1 0 175 0 1 354 0 1 197 319 0 8 1 0 134 13 21 163 0 1 83 3 1 8 0 1 4 3 1 48 2 0 4 2 0 109 11 7 10 2 0 6 1 0 84 1 0 114 14 9 34 4 2 13 1 0 5 2 1 12 4 3 41 6 0 10 1 0 7 chain 14494 chr10 135534747 + 89045784 89046111 L1PA15 4387 - 31 340 142908 27 5 0 14 3 1 44 17 14 39 1 0 10 4 0 17 20 19 32 45 43 49 chain 3649 chr10 135534747 + 89050682 89050724 MLT1B 390 - 16 58 212809 42 chain 14963 chr10 135534747 + 89056080 89056280 MER30B 195 + 0 190 141441 94 14 4 92 chain 3720 chr10 135534747 + 89056455 89056494 MER5B 177 + 0 39 211642 39 chain 35711 chr10 135534747 + 89064565 89065183 L1MA3 4352 - 0 583 75256 22 6 2 14 9 8 18 8 6 17 7 5 84 1 0 54 72 46 18 1 0 186 12 14 89 chain 19507 chr10 135534747 + 89079095 89079323 L1PA6 6164 + 5932 6160 128637 228 chain 24223 chr10 135534747 + 89094291 89094594 AluY 311 + 0 299 109068 22 8 0 103 0 1 149 2 5 19 chain 74105 chr10 135534747 + 89109138 89110399 L1PA7 6471 + 5450 6413 46458 165 1 4 25 310 2 47 0 1 4 1 3 21 5 0 95 1 5 440 8 11 102 0 2 36 chain 28040 chr10 135534747 + 89109332 89109632 AluYg6 310 + 0 301 92855 147 0 1 153 chain 14389 chr10 135534747 + 89134149 89134367 L1PA8 5853 - 9 216 143236 84 1 0 19 2 1 40 7 1 5 2 0 12 1 0 45 chain 22932 chr10 135534747 + 89145751 89146115 THE1B 368 + 0 368 115953 19 1 2 156 71 74 117 chain 39975 chr10 135534747 + 89161374 89161897 MLT2A2 560 + 0 560 69354 71 0 1 34 0 2 89 6 7 55 0 22 119 2 13 147 chain 35791 chr10 135534747 + 89192288 89192906 L1MA3 4352 + 3769 4352 75145 89 12 14 186 1 0 18 72 46 57 1 0 81 3 1 21 8 6 18 9 8 14 6 2 22 chain 3720 chr10 135534747 + 89200990 89201029 MER5B 177 - 138 177 211644 39 chain 14420 chr10 135534747 + 89201204 89201407 MER30B 195 - 5 195 143151 92 0 1 17 20 6 74 chain 14494 chr10 135534747 + 89211376 89211703 L1PA15 4387 + 4047 4356 142907 49 45 43 32 20 19 17 4 0 10 1 0 39 17 14 44 3 1 14 5 0 27 chain 11651 chr10 135534747 + 89216239 89216588 THE1D 372 - 11 372 153694 49 2 1 26 11 21 40 164 167 57 chain 248837 chr10 135534747 + 89222009 89225728 L1PA14 3548 - 76 3458 16319 7 1 0 10 6 0 41 4 3 12 2 1 5 1 0 15 4 2 32 14 9 114 1 0 84 1 0 6 2 0 10 11 7 109 2 0 4 2 0 48 3 1 9 6 5 83 0 1 163 13 21 133 1 0 9 318 0 197 0 1 354 0 1 175 1 0 152 0 12 139 0 1 4 1 0 338 22 25 21 1 0 387 20 20 398 8 6 29 2 0 30 2 1 20 1 0 69 4 0 58 chain 13249 chr10 135534747 + 89232546 89232856 THE1B 368 - 29 355 147291 20 8 9 4 1 0 46 24 32 14 0 4 10 17 20 8 1 0 57 10 8 35 19 25 13 2 0 21 chain 42229 chr10 135534747 + 89232960 89233528 L1PA16 3655 + 3008 3573 66363 196 2 1 86 12 10 180 10 10 82 chain 23458 chr10 135534747 + 89247709 89247988 AluSc8 310 + 8 290 113333 124 0 3 155 chain 9080 chr10 135534747 + 89252096 89252247 MSTB1 431 + 270 418 165163 43 30 27 78 chain 488179 chr10 135534747 + 89285317 89291069 L1PA5 6144 - 12 6126 7433 159 11 1 26 0 1 432 1 9 182 1 4 895 1 38 34 0 239 268 3 1 72 0 61 56 0 5 325 1 2 125 23 21 1092 0 1 244 9 14 656 9 0 405 6 17 28 2 1 551 21 35 114 chain 38540 chr10 135534747 + 89313248 89313686 L1PA5 6144 - 0 437 71381 18 1 0 419 chain 23951 chr10 135534747 + 89340130 89340485 L1PA16 3655 - 283 635 110619 63 29 27 81 1 0 74 1 0 43 0 1 63 chain 7477 chr10 135534747 + 89341553 89341645 MSTC 436 - 339 436 174291 75 0 5 17 chain 37556 chr10 135534747 + 89350307 89350773 L1PA7 6471 - 5 472 72744 142 0 18 8 19 0 286 0 2 11 chain 30523 chr10 135534747 + 89362461 89362849 MLT2A1 477 + 0 385 83382 168 5 2 215 chain 16918 chr10 135534747 + 89370269 89370627 THE1B 368 + 0 368 135799 76 5 19 12 9 10 50 89 85 54 7 6 56 chain 58850 chr10 135534747 + 89398431 89399213 MER4E1 777 - 7 761 53488 130 0 1 29 1 5 53 44 13 63 2 0 111 2 0 28 0 1 73 0 1 246 chain 26009 chr10 135534747 + 89404253 89404614 THE1B 368 + 0 368 99979 148 0 3 18 1 0 29 9 16 15 13 11 128 chain 43502 chr10 135534747 + 89410775 89411398 MER41B 635 + 0 628 64811 130 0 1 30 1 2 75 0 2 115 4 5 91 37 33 92 2 6 46 chain 5611 chr10 135534747 + 89489793 89489888 Tigger1 2417 + 560 663 188976 48 17 25 30 chain 36855 chr10 135534747 + 89508000 89508462 L1PA8A 6298 + 5820 6290 73727 60 0 4 301 0 4 101 chain 34721 chr10 135534747 + 89555991 89556453 MER4A1 472 + 0 472 76591 114 1 0 134 20 30 92 0 1 101 chain 192200 chr10 135534747 + 89560335 89563094 MER4-int 2692 + 87 2687 19849 13 3 0 18 8 3 19 1 0 23 10 14 448 0 1 97 1 10 48 6 19 64 2 1 36 9 6 27 0 2 6 3 0 46 0 1 14 3 5 23 58 0 59 0 13 74 0 1 102 0 5 173 7 11 350 1 0 55 0 2 129 142 0 10 1 0 257 2 1 84 0 1 84 0 1 69 1 3 144 1 0 28 chain 27763 chr10 135534747 + 89582190 89582692 L1MA3 4352 + 3882 4322 93826 204 67 39 104 0 2 4 4 0 24 2 0 23 1 0 6 1 0 12 37 9 13 chain 3043 chr10 135534747 + 89607003 89607110 Charlie2b 853 - 159 262 224147 19 53 50 16 1 0 18 chain 4553 chr10 135534747 + 89614596 89614681 MLT1H-int 1039 + 620 710 200192 15 4 8 22 8 9 36 chain 112814 chr10 135534747 + 89614889 89616230 L1PA6 6164 - 3 1341 33436 151 0 4 167 1 0 84 3 2 215 2 8 156 10 0 339 1 0 212 chain 83953 chr10 135534747 + 89640992 89641967 L1PA5 6144 - 13 998 41925 313 1 0 253 0 11 408 chain 523384 chr10 135534747 + 89657561 89663738 L1PA6 6164 - 4 6164 4828 321 1 0 465 10 0 66 1 0 280 14 0 559 0 3 571 1 0 663 0 4 37 4 1 17 0 1 414 4 0 216 2 1 212 1 2 1478 0 4 87 3 5 243 2 1 44 7 11 454 chain 28886 chr10 135534747 + 89709736 89710046 AluYg6 310 + 0 310 89508 310 chain 28759 chr10 135534747 + 89742860 89743170 AluYa5 310 - 0 310 90076 310 chain 79084 chr10 135534747 + 89758420 89759445 L1PA10 4194 + 3137 4161 44014 118 5 6 270 0 1 169 1 0 4 0 1 202 0 1 206 11 8 27 1 0 11 chain 4986 chr10 135534747 + 89861682 89861772 L1MB7 1623 - 200 287 195287 47 16 13 27 chain 2731 chr10 135534747 + 89867205 89867253 MIRb 242 + 160 220 229723 23 6 18 19 chain 42219 chr10 135534747 + 89871510 89872167 L1PB1 5432 - 28 650 66377 13 1 0 21 1 0 24 2 0 14 11 8 27 15 1 16 1 0 44 1 0 15 3 1 53 2 0 9 4 1 10 1 0 9 1 0 24 14 11 321 chain 14957 chr10 135534747 + 89881835 89882145 THE1D 372 - 0 325 141456 43 3 2 79 82 91 22 0 6 50 14 15 17 chain 24975 chr10 135534747 + 89908215 89908574 THE1B 368 - 0 368 104936 119 41 51 29 1 0 169 chain 15663 chr10 135534747 + 89910494 89910716 Tigger3a 397 + 142 342 139391 16 22 0 184 chain 5944 chr10 135534747 + 89933569 89933677 L1PB1 5432 - 5 105 185740 4 1 0 9 1 0 10 1 0 13 1 0 21 1 0 23 3 1 15 1 0 4 chain 42958 chr10 135534747 + 89961728 89962204 L1PA4 6152 + 5664 6140 65463 476 chain 5696 chr10 135534747 + 89993286 89993441 MER53 195 - 28 185 188146 29 72 74 54 chain 131067 chr10 135534747 + 90023600 90025517 L1PB1 5432 - 10 1865 27842 18 24 22 12 1 0 16 69 53 21 1 0 43 1 0 16 2 1 19 1 0 33 2 0 9 12 8 5 1 0 8 1 0 23 3 0 10 11 11 131 0 1 68 0 1 183 15 0 89 3 0 89 0 1 324 0 2 183 0 1 23 28 6 28 0 2 29 0 3 208 0 1 154 chain 40883 chr10 135534747 + 90036746 90037243 L1PA6 6164 + 5668 6162 68046 221 0 1 91 17 15 11 1 0 151 1 0 4 chain 235420 chr10 135534747 + 90064284 90067662 L1PA13 3608 + 90 3440 17002 19 6 4 23 5 2 25 1 0 14 4 1 23 28 17 62 13 11 125 1 0 12 4 3 14 2 0 8 0 1 4 10 5 18 1 0 17 7 5 12 2 0 18 1 0 98 13 0 141 0 7 170 0 3 63 0 10 85 0 6 285 0 1 385 1 2 59 0 1 54 1 0 10 30 29 355 0 3 146 0 3 38 1 2 20 1 2 236 1 2 119 5 1 48 0 2 12 0 1 39 6 8 78 9 1 74 1 0 27 1 0 115 2 0 62 2 1 54 1 0 5 2 0 44 chain 23503 chr10 135534747 + 90100835 90101110 AluSp 311 + 31 306 113117 275 chain 520981 chr10 135534747 + 90109996 90116115 L1PA5 6144 - 6 6144 5058 841 0 3 226 21 0 8 0 21 346 4 30 257 0 1 60 0 4 1181 5 6 12 0 1 6 12 0 599 0 1 225 1 0 4 14 10 361 1 0 142 1 3 219 0 1 702 0 2 487 7 0 112 1 2 55 0 1 209 chain 215178 chr10 135534747 + 90152571 90154960 L1PA4 6152 + 3766 6151 18154 159 5 0 1067 0 1 96 1 0 730 0 1 331 chain 37486 chr10 135534747 + 90166337 90166926 L1PB1 5432 + 4841 5404 72832 262 11 15 20 1 0 9 16 11 9 2 0 53 4 3 14 1 0 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 chain 505147 chr10 135534747 + 90203096 90208907 L1PA5 6144 + 3 6135 6527 110 0 1 265 8 1 1172 0 2 120 0 1 391 0 3 125 0 2 1088 0 1 72 0 301 184 0 1 501 0 4 53 0 1 286 0 1 522 0 1 6 1 0 51 0 9 609 3 4 244 chain 8722 chr10 135534747 + 90221972 90222132 L1MA3 4352 - 0 151 167078 21 3 0 3 1 0 9 7 6 20 6 5 6 1 0 22 2 0 59 chain 7013 chr10 135534747 + 90345400 90345481 HY4 93 - 3 84 177370 81 chain 157155 chr10 135534747 + 90370753 90372814 L1PBa 3878 + 250 2348 23704 44 0 1 225 1 0 103 0 1 150 27 28 658 0 4 152 2 0 17 10 47 109 5 0 83 5 6 470 chain 6508 chr10 135534747 + 90378890 90378966 LTR12F 595 + 402 478 181181 76 chain 158583 chr10 135534747 + 90386017 90388161 L1PA8 5853 - 113 2236 23520 36 12 11 14 1 0 71 10 8 36 1 0 23 7 8 354 8 10 58 17 18 10 2 1 73 6 0 8 0 3 182 0 1 350 33 1 51 0 1 197 1 0 154 7 23 124 1 0 4 0 1 255 1 0 37 chain 538241 chr10 135534747 + 90388222 90394495 L1PA5 6144 - 13 6141 3114 18 0 6 294 0 1 1091 133 0 106 1 0 270 0 4 252 14 4 737 3 0 72 18 2 104 0 1 1617 0 2 33 0 1 68 0 4 11 1 0 1430 chain 15240 chr10 135534747 + 90413854 90414033 L1PA5 6144 - 1 182 140663 10 1 2 123 0 1 45 chain 102383 chr10 135534747 + 90422143 90423407 L1PA7 6471 + 5171 6443 36166 20 0 4 136 1 2 214 1 2 72 0 3 79 1 0 285 11 10 308 3 11 8 8 0 80 0 1 37 chain 12914 chr10 135534747 + 90451795 90451956 L1M1 2793 + 2245 2412 148574 20 1 7 140 chain 22429 chr10 135534747 + 90469042 90469330 L1PA7 6471 - 1 298 118342 4 1 0 194 0 8 47 1 0 4 0 1 9 6 8 22 chain 57643 chr10 135534747 + 90507394 90508134 L1PA8A 6298 + 5560 6290 54165 442 13 6 169 18 15 98 chain 11659 chr10 135534747 + 90541790 90542010 L1MA3 4352 + 4136 4352 153656 34 0 3 6 1 0 21 0 2 52 8 6 20 11 12 22 1 0 14 15 9 15 chain 8608 chr10 135534747 + 90551681 90551777 L1PA5 6144 + 5866 5962 167679 96 chain 23186 chr10 135534747 + 90557669 90557953 THE1B-int 1605 - 1308 1605 114749 36 0 10 135 0 3 113 chain 20785 chr10 135534747 + 90561068 90561294 L1PA5 6144 + 5295 5521 124663 226 chain 53726 chr10 135534747 + 90561294 90561906 L1PA5 6144 + 5523 6135 56518 612 chain 20990 chr10 135534747 + 90568733 90569010 AluSp 311 - 34 310 123955 125 14 14 10 1 0 127 chain 3354 chr10 135534747 + 90613587 90613655 MER53 195 - 29 125 217993 25 15 43 28 chain 8018 chr10 135534747 + 90613693 90613839 MER20 218 + 38 182 170943 42 34 32 70 chain 27345 chr10 135534747 + 90627814 90628201 MLT2A1 477 - 81 477 95126 146 0 2 36 6 1 10 0 5 22 8 12 23 0 1 84 13 15 39 chain 92012 chr10 135534747 + 90630673 90631837 L1PA7 6471 - 2 1161 38968 12 3 0 134 21 10 6 0 11 157 0 3 308 1 0 4 7 3 196 0 4 140 4 0 171 chain 29268 chr10 135534747 + 90642633 90642958 L1PA5 6144 - 15 340 87695 325 chain 7266 chr10 135534747 + 90666719 90666911 L1MA8 2339 - 166 326 175677 9 3 0 41 3 0 5 54 33 19 10 5 48 chain 18412 chr10 135534747 + 90688903 90689259 THE1B 368 - 0 368 131741 56 7 6 55 68 74 12 1 2 20 0 4 15 14 16 108 chain 31408 chr10 135534747 + 90706502 90706848 L1PA4 6152 - 1 349 81799 112 0 1 29 0 1 205 chain 3532 chr10 135534747 + 90718948 90718991 MER3 215 - 125 168 214837 43 chain 21636 chr10 135534747 + 90722477 90722953 THE1B 368 - 0 368 121633 40 1 0 85 2 1 12 161 54 7 1 0 92 12 14 63 chain 19836 chr10 135534747 + 90730411 90730631 L1PA5 6144 + 5919 6139 127693 220 chain 17486 chr10 135534747 + 90735858 90736081 MER30 238 - 0 238 134298 44 3 0 66 5 23 105 chain 37096 chr10 135534747 + 90736844 90737244 L1PA2 6032 - 926 1326 73387 400 chain 85483 chr10 135534747 + 90737244 90738162 L1PA2 6032 + 5107 6025 41352 918 chain 13949 chr10 135534747 + 90756095 90756365 L1MA8 2339 + 2028 2260 144755 71 3 1 19 28 0 38 2 3 31 14 8 56 3 0 5 chain 102648 chr10 135534747 + 90777510 90778897 LTR12C 1709 - 0 1709 36094 84 5 4 393 11 4 14 25 1 91 4 2 4 1 0 131 0 278 215 0 37 51 19 62 37 2 1 300 chain 54387 chr10 135534747 + 90832053 90832945 L1PB1 5432 - 2 853 56107 6 7 0 6 1 0 14 1 0 13 1 0 21 1 0 23 3 1 14 1 0 8 2 0 12 20 10 6 1 0 15 7 6 54 2 1 52 24 18 4 1 0 12 1 0 19 5 0 8 10 13 457 12 10 48 chain 15630 chr10 135534747 + 90860845 90861272 L1MA8 2339 - 21 395 139489 19 54 30 12 1 0 24 3 1 36 6 0 36 13 10 31 85 75 35 1 0 51 6 0 14 chain 29642 chr10 135534747 + 90865101 90865535 MLT2A2 560 - 86 552 86095 18 31 57 111 0 2 82 10 11 129 0 2 44 0 1 9 chain 135823 chr10 135534747 + 90867741 90869270 L1PA5 6144 + 4596 6132 26874 33 0 5 660 0 2 836 chain 13442 chr10 135534747 + 90892846 90892993 L1PA5 6144 - 5 152 146542 147 chain 288846 chr10 135534747 + 90949754 90954223 L1PB1 5432 - 10 3833 14096 18 1 0 13 1 0 21 1 0 26 2 0 13 1 0 4 2 0 30 22 1 16 1 0 43 1 0 15 3 2 52 2 0 6 8 4 12 2 1 11 24 18 11 1 2 105 4 7 76 0 29 265 3 0 243 0 1 106 0 1 103 0 1 65 10 11 354 5 8 88 8 0 37 0 4 318 636 11 428 0 1 348 3 0 179 0 1 536 9 1 177 chain 15263 chr10 135534747 + 90951923 90952121 MLT2A2 560 + 0 196 140592 180 2 0 16 chain 6601 chr10 135534747 + 90952184 90952281 L1PB 1623 - 1410 1501 180440 22 2 0 4 1 0 16 3 0 49 chain 4064 chr10 135534747 + 90956047 90956103 L1MB7 1623 + 1123 1180 206417 26 1 2 29 chain 73897 chr10 135534747 + 90972236 90973049 L1PA3long 6157 + 5334 6153 46565 699 0 6 114 chain 119797 chr10 135534747 + 91013342 91014915 THE1B-int 1605 - 9 1605 31123 278 1 2 133 8 9 415 27 23 27 13 14 80 2 1 145 12 37 432 chain 28276 chr10 135534747 + 91027196 91027499 L1PA2 6032 + 5729 6032 92013 303 chain 25235 chr10 135534747 + 91042112 91042415 AluSp 311 + 0 300 103562 128 3 0 172 chain 226063 chr10 135534747 + 91044875 91048464 HERVH-int 3825 + 0 3825 17528 316 29 28 66 11 10 26 78 40 17 37 29 13 0 1 13 9 29 16 7 0 10 73 130 12 0 1 21 1 0 309 7 0 142 15 0 12 5 6 184 9 0 655 4 9 489 1 0 216 11 0 184 437 687 154 chain 6450 chr10 135534747 + 91075675 91075744 L1PA2 6032 - 4 73 181636 69 chain 521633 chr10 135534747 + 91075859 91081971 L1PA5 6144 + 0 6129 5000 64 6 7 49 4 18 414 0 1 137 22 12 111 2 19 230 1 0 107 9 0 185 0 1 667 0 1 219 0 1 71 2 4 37 0 1 693 7 8 100 0 2 17 1 0 542 5 0 859 0 1 716 1 0 183 1 2 650 chain 15505 chr10 135534747 + 91084530 91084733 L1PA6 6164 - 243 460 139876 21 1 0 57 1 2 70 0 14 53 chain 7132 chr10 135534747 + 91084733 91084817 L1PA6 6164 + 6078 6162 176528 84 chain 28708 chr10 135534747 + 91084858 91085321 L1PA15 4387 + 3902 4345 90303 30 1 0 74 2 0 92 8 7 25 1 0 55 1 0 20 6 2 9 3 2 49 10 7 40 3 1 14 4 0 16 chain 53639 chr10 135534747 + 91085628 91086455 L1MA3 4352 + 3513 4328 56595 4 1 0 382 0 1 55 0 3 69 2 0 65 85 65 93 0 9 23 19 18 17 1 0 11 chain 23015 chr10 135534747 + 91086587 91087012 MER4B 649 - 30 433 115555 55 1 0 27 9 19 63 45 35 64 45 11 25 1 14 90 chain 30424 chr10 135534747 + 91089525 91089935 LTR7 482 - 0 482 83645 186 0 31 40 0 1 109 8 46 32 4 6 31 chain 12607 chr10 135534747 + 91094241 91094547 AluSq4 311 - 0 311 149817 48 0 1 72 130 0 35 1 135 20 chain 35761 chr10 135534747 + 91109962 91110738 LTR15 485 - 19 485 75188 27 9 0 64 299 0 22 7 3 4 1 0 61 0 4 178 1 0 103 chain 104020 chr10 135534747 + 91125065 91126230 L1PA5 6144 - 856 2026 35730 61 1 2 880 0 4 223 chain 2038 chr10 135534747 + 91126259 91126281 L1PA5 6144 + 5274 5296 238283 22 chain 71537 chr10 135534747 + 91126281 91127093 L1PA5 6144 + 5333 6144 47680 667 1 2 133 2 0 9 chain 13011 chr10 135534747 + 91153793 91154000 Tigger3a 397 - 0 251 148203 44 33 49 40 0 28 90 chain 7895 chr10 135534747 + 91157691 91157816 L1MB3 1562 - 7 129 171683 28 5 4 85 2 0 5 chain 11167 chr10 135534747 + 91165219 91165627 MLT1D 503 - 20 455 155567 36 18 16 36 44 45 12 6 17 33 156 173 67 chain 50126 chr10 135534747 + 91165973 91166593 LTR12 884 + 0 882 58923 77 0 263 41 2 0 128 1 2 371 chain 324009 chr10 135534747 + 91166630 91170592 HERV9-int 5642 + 0 4824 12437 46 1 2 311 1 10 9 9 0 406 8 7 312 83 0 1375 0 6 526 7 942 247 0 1 188 0 2 418 0 1 15 chain 57733 chr10 135534747 + 91171968 91172704 LTR12 884 + 0 884 54115 163 1 18 27 0 1 1 0 132 39 2 0 503 chain 8108 chr10 135534747 + 91196437 91196541 MER30 238 - 2 106 170444 46 3 0 49 0 3 6 chain 516019 chr10 135534747 + 91204398 91210521 L1PA6 6164 + 6 6162 5570 182 0 7 305 3 20 18 0 1 301 0 1 1020 1 0 279 6 7 410 0 2 679 0 1 45 5 0 146 0 4 252 28 23 68 0 8 100 1 0 6 0 1 1423 1 0 565 0 3 279 chain 17957 chr10 135534747 + 91247048 91247271 L1PB4 2604 + 2037 2260 132965 223 chain 42650 chr10 135534747 + 91258441 91258985 L1PBa1 4058 + 104 1602 65840 72 0 951 170 0 1 48 0 3 102 1 0 151 chain 105094 chr10 135534747 + 91259625 91261143 L1PB 1623 + 119 1586 35476 50 4 1 17 24 21 61 4 3 50 0 1 34 0 7 34 2 1 12 1 0 74 1 0 230 11 5 262 0 5 315 1 0 6 15 3 135 1 0 7 2 1 30 1 0 4 3 0 13 4 0 15 1 0 7 1 0 4 47 26 22 2 0 11 chain 503500 chr10 135534747 + 91265215 91271489 L1PA7 6471 + 5 6461 6637 196 14 13 115 24 194 198 1 10 4 0 1 253 6 7 153 1 2 745 0 3 384 4 0 206 1 0 23 0 1 127 0 1 98 0 1 41 0 1 721 2 0 34 4 5 91 22 6 352 0 2 219 0 3 453 0 4 115 0 3 436 0 3 157 0 1 234 1 0 17 0 2 62 0 1 7 2 1 425 0 1 44 1 0 136 1 0 12 1 0 113 0 1 18 chain 151773 chr10 135534747 + 91305092 91306902 L1PA8A 6298 + 4446 6291 24367 172 0 7 272 0 9 131 6 21 36 3 0 277 0 1 99 1 5 13 1 3 81 0 1 611 1 0 62 2 0 5 0 2 37 chain 2948 chr10 135534747 + 91313932 91313967 MER102c 337 + 114 149 226104 35 chain 4290 chr10 135534747 + 91364472 91364519 Tigger1 2417 - 113 160 203356 47 chain 21078 chr10 135534747 + 91442337 91442615 AluSc8 310 + 8 309 123630 124 11 37 120 3 0 20 chain 57705 chr10 135534747 + 91455171 91456062 MER4D1 891 + 14 883 54131 38 5 6 56 16 14 146 0 4 94 20 23 43 24 19 204 17 0 62 25 19 141 chain 25307 chr10 135534747 + 91467971 91468259 AluSp 311 - 15 303 103184 288 chain 73364 chr10 135534747 + 91506836 91507651 L1PA3long 6157 + 5340 6155 46854 815 chain 120512 chr10 135534747 + 91523660 91524978 L1PA3long 6157 - 5 1328 30873 556 0 1 712 0 4 50 chain 45198 chr10 135534747 + 91524978 91525482 L1PA3long 6157 + 4327 4837 62358 35 0 4 372 0 2 97 chain 47455 chr10 135534747 + 91525482 91526014 L1P1 4361 - 2442 2974 60864 532 chain 12505 chr10 135534747 + 91526943 91527109 L1PA7 6471 - 1 170 150225 12 5 8 149 chain 12058 chr10 135534747 + 91529021 91529163 MER107 203 + 3 145 151955 142 chain 252840 chr10 135534747 + 91535296 91539185 L1MA1 4479 - 344 4252 16090 24 8 6 27 1 0 51 1 2 63 22 15 63 7 8 23 2 0 7 3 1 19 1 0 65 10 9 13 2 0 24 1 0 16 0 4 105 1 0 4 0 1 66 2 0 128 7 4 124 5 0 13 1 0 170 0 3 90 0 1 28 1 0 80 7 6 38 49 21 9 1 0 32 27 25 79 2 1 22 3 2 39 3 0 5 0 4 78 2 0 5 1 3 125 0 3 46 1 0 21 1 0 60 0 12 52 0 4 19 1 0 46 0 1 34 2 0 5 6 11 35 0 3 77 6 4 30 0 1 134 0 4 31 0 5 108 0 4 74 7 0 60 0 3 105 17 19 33 72 76 30 0 2 30 9 10 75 14 20 4 1 0 86 6 22 7 0 9 25 1 0 55 3 0 70 8 9 20 3 7 95 0 3 312 6 7 86 2 0 53 chain 2773 chr10 135534747 + 91536619 91536652 L1MA1 4479 - 1608 1641 227698 33 chain 11703 chr10 135534747 + 91543793 91543921 L1PA4 6152 - 1 130 153453 95 0 1 33 chain 4838 chr10 135534747 + 91545047 91545154 MER51A 677 - 423 501 196908 55 37 8 15 chain 29580 chr10 135534747 + 91547410 91547720 AluYa5 310 - 0 310 86279 310 chain 13415 chr10 135534747 + 91547720 91548040 L1PB1 5432 - 37 326 146655 4 1 0 21 6 5 19 2 0 14 8 5 16 9 0 11 2 0 4 1 0 15 1 0 44 1 0 16 2 1 49 31 24 13 10 9 11 1 0 8 chain 45302 chr10 135534747 + 91557003 91557556 LTR66 600 + 0 571 62714 397 2 0 5 0 4 78 1 17 70 chain 118650 chr10 135534747 + 91578081 91579621 THE1B-int 1605 - 6 1605 31555 99 0 7 88 0 1 247 36 40 164 0 1 53 0 1 98 4 20 76 0 1 181 0 3 10 1 0 45 7 32 414 5 6 12 chain 23222 chr10 135534747 + 91601768 91602047 AluSp 311 - 19 298 114587 150 1 2 20 1 0 107 chain 16209 chr10 135534747 + 91610957 91611156 L1PA7 6471 + 6273 6469 137722 186 3 0 10 chain 39014 chr10 135534747 + 91622684 91623299 L1PB2 3958 - 128 722 70728 47 0 1 7 7 6 14 2 0 71 13 12 128 5 4 89 11 7 5 2 0 58 6 0 18 1 0 56 2 0 27 7 6 33 1 0 5 chain 7122 chr10 135534747 + 91629854 91629929 CheshMITE 75 - 0 75 176610 75 chain 42385 chr10 135534747 + 91632921 91633474 LTR43 600 + 0 561 66173 43 0 5 331 6 7 53 1 3 119 chain 22612 chr10 135534747 + 91633784 91634166 THE1D 372 - 6 372 117525 142 1 0 31 29 31 82 44 27 53 chain 11318 chr10 135534747 + 91638808 91638931 L1PA3long 6157 + 6034 6157 155007 123 chain 521724 chr10 135534747 + 91691293 91697402 L1PA5 6144 - 4 6139 4995 846 1 0 636 0 1 314 2 1 673 0 1 388 0 1 4 0 2 109 2 0 612 23 24 1308 0 1 49 9 0 338 6 23 255 0 1 419 1 15 114 chain 111508 chr10 135534747 + 91706344 91708073 L1MA1 4479 + 2434 4151 33807 40 0 3 94 6 13 86 1 0 101 2 0 23 0 1 8 1 0 58 47 49 75 3 1 75 0 4 96 2 0 14 4 0 44 0 12 20 45 39 21 5 0 25 34 35 18 3 0 130 2 0 195 8 7 18 2 0 17 1 0 70 1 0 19 2 0 101 1 0 6 3 0 126 1 0 21 0 1 8 2 0 34 1 0 9 chain 28766 chr10 135534747 + 91720347 91720653 AluYg6 310 + 0 306 90041 306 chain 23388 chr10 135534747 + 91740595 91740895 AluSp 311 + 10 303 113710 42 10 5 75 2 0 171 chain 36520 chr10 135534747 + 91747998 91748416 L1PA7 6471 - 10 428 74215 418 chain 14703 chr10 135534747 + 91753112 91753463 L1PB1 5432 - 10 323 142263 18 1 0 12 1 0 22 1 0 15 11 9 14 1 0 5 3 1 18 16 6 6 2 0 15 5 4 37 22 20 52 2 0 9 2 0 3 2 0 12 1 0 5 2 1 23 7 0 6 chain 30801 chr10 135534747 + 91764255 91764601 L1PA5 6144 - 9 355 82859 346 chain 403204 chr10 135534747 + 91770815 91775341 L1PA3long 6157 + 1 6152 9994 152 0 1 587 0 1 25 11 139 370 22 1510 727 0 1 2488 0 6 144 chain 36991 chr10 135534747 + 91787796 91788276 LTR19B 566 - 0 481 73521 67 1 3 216 5 3 110 2 3 79 chain 10404 chr10 135534747 + 91791290 91791417 L1PA16 3655 + 1869 1996 158669 127 chain 3129 chr10 135534747 + 91792564 91792604 L1PA16 3655 + 3143 3182 222375 10 1 0 29 chain 38526 chr10 135534747 + 91794694 91795151 L1PA6 6164 + 5704 6159 71403 450 2 0 5 chain 40514 chr10 135534747 + 91816270 91817006 L1PB1 5432 + 4716 5417 68575 81 0 1 6 4 11 180 1 7 92 11 12 8 2 0 3 17 0 21 8 6 10 25 19 39 8 7 17 1 0 45 1 0 15 2 0 6 17 7 18 2 0 5 1 0 14 2 0 24 1 0 20 2 1 13 1 0 13 chain 4195 chr10 135534747 + 91831108 91831166 L1MA3 4352 - 2294 2351 204613 10 1 0 47 chain 2962 chr10 135534747 + 91832998 91833031 L1MA3 4352 + 574 607 225843 33 chain 39007 chr10 135534747 + 91840781 91841226 LTR7 482 - 7 482 70732 180 1 32 9 1 0 254 chain 291180 chr10 135534747 + 91842495 91846095 HERVH-int 3825 - 9 3825 13946 484 2 212 359 0 1 823 1 0 4 0 1 216 8 35 239 0 1 218 15 0 444 1 0 49 2 1 16 2 22 14 42 1 20 1 0 7 1 19 12 1 0 14 7 1 13 4 1 9 1 0 10 1 0 38 5 0 303 6 17 48 0 4 160 chain 37530 chr10 135534747 + 91846097 91846549 LTR7 482 - 0 482 72774 98 0 2 86 12 42 197 9 7 50 chain 179746 chr10 135534747 + 91849457 91851990 MER4-int 2692 + 74 2689 21013 24 2 1 19 3 2 98 12 13 92 0 1 99 4 6 57 10 12 133 0 1 89 7 5 58 0 13 63 1 0 4 0 2 222 1 34 23 4 10 157 1 0 14 2 0 76 12 17 57 24 32 24 0 1 67 0 1 77 0 2 100 1 0 107 1 2 4 0 1 377 2 1 9 5 7 14 14 5 48 0 1 229 0 18 86 chain 34814 chr10 135534747 + 91867746 91868201 LTR2 463 - 0 457 76450 65 37 38 4 0 1 349 chain 526484 chr10 135534747 + 91872846 91880229 L1PA5 6144 - 9 6144 4549 616 0 1 223 0 4 70 1 0 1122 0 1 146 0 2 624 1 2 148 1 0 20 1 7 583 0 4 1486 0 3 340 0 1 588 1269 0 144 chain 96858 chr10 135534747 + 91878818 91880045 LTR12C 1709 - 0 1657 37596 84 1 0 18 4 0 47 0 100 20 0 1 211 0 4 106 2 0 6 1 0 135 0 278 122 10 11 96 8 10 79 0 43 46 5 14 226 chain 24568 chr10 135534747 + 91883231 91883590 THE1B 368 + 0 368 107155 172 3 2 24 35 45 125 chain 539725 chr10 135534747 + 91913210 91919234 L1PA3long 6157 - 0 6157 2861 1799 0 4 1165 1 0 18 1 0 1028 1 2 1237 8 136 596 1 2 16 0 1 153 chain 59451 chr10 135534747 + 91925575 91926484 L1MA1 4479 - 324 1216 53141 13 7 6 29 3 1 28 10 9 52 0 1 50 9 4 10 2 0 5 1 0 88 1 0 7 5 7 18 1 0 72 1 0 10 8 6 25 6 5 186 10 14 60 1 0 134 5 0 52 chain 22437 chr10 135534747 + 91931206 91931549 THE1B 368 + 0 368 118316 20 5 6 14 0 15 53 1 0 90 35 45 125 chain 13350 chr10 135534747 + 91938067 91938417 L1PB1 5432 - 20 327 146882 8 1 0 10 3 2 22 1 0 24 2 0 11 69 45 9 1 0 44 1 0 16 2 1 51 3 1 9 18 13 12 1 0 20 3 0 9 chain 210875 chr10 135534747 + 91942274 91944647 L1PA4 6152 - 0 2375 18435 6 3 0 49 0 4 54 1 2 2260 chain 117764 chr10 135534747 + 91944647 91945935 L1PA4 6152 + 2489 3777 31870 1288 chain 28163 chr10 135534747 + 91955827 91956198 MLT2A1 477 + 4 375 92421 28 0 1 136 4 1 9 1 2 23 0 1 170 chain 35033 chr10 135534747 + 91970793 91971295 MER1A 529 - 14 502 76141 55 3 5 105 17 0 127 5 7 41 6 5 143 chain 22662 chr10 135534747 + 91980965 91981341 THE1D 372 - 0 372 117261 28 17 12 93 46 56 132 9 0 51 chain 382436 chr10 135534747 + 91989326 91994377 L1PB1 5432 + 19 5103 10681 251 1 0 274 3 1 63 0 4 15 0 1 121 1 0 13 1 0 291 1 0 20 0 1 8 9 8 89 1 20 79 8 9 115 0 12 173 5 11 37 6 5 6 0 1 292 0 1 198 0 1 113 0 1 121 0 4 17 1 0 447 1 0 50 0 3 235 9 10 102 7 6 354 0 1 4 5 4 14 2 1 100 10 11 450 12 0 389 6 8 25 5 9 8 2 0 186 11 10 175 1 0 87 2 0 19 chain 22697 chr10 135534747 + 91994836 91995138 THE1B 368 - 62 368 117089 66 1 0 10 1 0 16 0 4 10 0 3 28 1 0 169 chain 13874 chr10 135534747 + 91997869 91998025 L1PA4 6152 + 5987 6143 144992 156 chain 4474 chr10 135534747 + 92010256 92010311 L1MA4 2864 + 2615 2670 201074 55 chain 537067 chr10 135534747 + 92010372 92016389 L1PA3long 6157 + 0 6157 3305 152 0 1 262 0 1 352 8 136 74 1 0 4 0 1 1802 0 4 388 1 0 1171 6 10 952 0 4 64 1 0 779 chain 31681 chr10 135534747 + 92016855 92017288 L1PA16 3655 + 3128 3570 81351 73 1 0 88 3 1 111 12 24 145 chain 3929 chr10 135534747 + 92033222 92033274 MER5C 305 + 183 235 208433 52 chain 106007 chr10 135534747 + 92040315 92041505 L1PA4 6152 - 2 1192 35256 1190 chain 28280 chr10 135534747 + 92054739 92055171 LTR7Y 441 + 0 441 92003 103 13 4 53 68 84 99 0 2 96 chain 288928 chr10 135534747 + 92055171 92058789 HERVH-int 3825 + 0 3825 14093 184 0 4 341 76 14 27 1 0 7 1 0 27 29 0 14 1 38 41 1 0 58 0 1 7 0 2 13 0 3 510 1 0 390 11 38 296 0 10 84 0 2 647 0 1 56 1 2 253 9 11 39 8 218 260 0 2 225 chain 27843 chr10 135534747 + 92060048 92060479 LTR7Y 441 + 0 441 93551 56 5 3 44 13 4 53 66 81 187 0 6 7 chain 77922 chr10 135534747 + 92061409 92062364 LTR5_Hs 974 - 0 974 44562 104 1 0 9 30 37 200 0 3 194 0 10 417 chain 92431 chr10 135534747 + 92069545 92070605 L1PA4 6152 + 5080 6151 38835 952 0 1 53 1 11 54 chain 30132 chr10 135534747 + 92091193 92091509 AluYb8 318 - 2 318 84377 316 chain 108500 chr10 135534747 + 92094097 92095336 L1PA6 6164 + 4918 6160 34562 401 0 4 824 1 0 13 chain 509982 chr10 135534747 + 92125588 92131711 L1PA6 6164 - 15 6164 6166 133 12 13 120 0 3 66 0 7 657 0 10 39 0 1 451 6 0 712 0 1 29 7 8 201 2 0 508 0 1 289 0 1 72 0 6 396 1 0 4 1 2 85 19 0 504 0 1 111 1 0 172 0 2 135 0 1 595 1 18 228 1 0 348 0 1 60 0 1 157 chain 3362 chr10 135534747 + 92142513 92142550 MADE1 96 - 59 96 217834 37 chain 3435 chr10 135534747 + 92143539 92143580 L1M2 1805 - 294 335 216475 41 chain 28997 chr10 135534747 + 92144308 92144718 LTR7 482 + 0 482 88997 69 8 46 109 7 8 33 0 31 123 12 14 49 chain 28076 chr10 135534747 + 92151878 92152183 AluYf4 310 + 0 305 92736 305 chain 46027 chr10 135534747 + 92168702 92169360 LTR66 600 - 0 600 62019 95 0 16 33 0 1 55 75 0 400 chain 49527 chr10 135534747 + 92170066 92170685 LTR12_ 688 - 0 688 59369 273 0 4 230 0 24 28 0 41 88 chain 236201 chr10 135534747 + 92172383 92175754 MER61-int 3695 + 1 3695 16966 27 5 1 106 0 23 36 39 0 59 1 0 17 3 2 12 5 6 121 15 1 139 8 9 21 66 162 103 0 5 21 8 9 30 5 7 112 1 0 35 0 1 6 0 8 344 0 1 5 7 2 92 21 26 588 3 0 33 13 13 130 1 0 71 10 0 14 0 1 28 0 1 104 9 13 64 3 1 56 0 1 100 1 0 94 1 0 37 2 1 245 0 1 6 5 258 8 0 5 62 0 6 111 16 7 86 chain 20634 chr10 135534747 + 92176243 92176528 L1PA5 6144 - 0 286 125176 96 0 1 41 0 7 15 23 16 110 chain 225163 chr10 135534747 + 92181865 92184521 L1PA5 6144 - 9 2673 17582 132 0 4 37 22 1 110 1 23 17 0 1 1614 1 2 224 0 1 98 1 0 4 0 1 395 chain 104921 chr10 135534747 + 92214611 92216251 L1PA15 4387 - 76 1778 35520 41 10 7 42 19 14 19 5 4 41 50 71 107 0 1 32 1 0 43 2 0 60 4 0 15 18 27 37 0 1 188 0 1 152 62 68 8 0 1 90 10 35 38 2 0 213 0 2 12 1 0 143 8 18 48 0 4 119 chain 2885 chr10 135534747 + 92216631 92216711 MLT1C 463 + 358 436 227260 18 36 34 26 chain 87994 chr10 135534747 + 92242904 92244281 L1PB1 5432 - 10 1320 40374 18 1 0 9 0 3 22 1 0 22 7 5 11 1 0 5 3 1 18 17 6 21 1 0 45 1 0 15 2 1 51 3 1 9 2 0 3 2 0 12 1 0 6 2 0 24 11 0 8 4 3 19 7 9 61 31 22 183 32 12 169 3 0 23 0 9 394 11 0 34 0 4 52 chain 108198 chr10 135534747 + 92257749 92259053 L1PA7 6471 - 5 1309 34647 140 29 29 305 1 0 179 0 2 190 1 0 459 chain 12151 chr10 135534747 + 92267014 92267159 MER107 203 - 58 203 151613 145 chain 447708 chr10 135534747 + 92305832 92311398 HERVL-int 5654 + 0 5654 8822 276 0 1 365 1 0 196 0 8 342 1 2 564 1 3 265 0 1 247 2 0 374 4 55 696 0 1 198 1 0 625 0 1 322 0 1 18 2 3 144 0 10 201 0 5 178 0 11 112 2 0 429 chain 14023 chr10 135534747 + 92341884 92342038 L1PA5 6144 + 5988 6142 144494 154 chain 17126 chr10 135534747 + 92360378 92360652 THE1B 368 + 20 319 134576 14 6 21 117 1 0 26 14 16 14 9 17 48 0 1 25 chain 60033 chr10 135534747 + 92360652 92361429 THE1B-int 1605 + 817 1600 52805 104 5 6 28 5 6 177 7 11 92 5 4 254 0 1 100 chain 22430 chr10 135534747 + 92364799 92365173 MLT2A1 477 - 96 477 118339 58 1 0 13 64 18 74 0 50 24 1 2 62 0 3 77 chain 457155 chr10 135534747 + 92365173 92370807 HERVL-int 5654 - 0 5654 8509 428 0 1 323 0 4 295 1 2 16 0 4 360 0 1 237 2 5 40 10 3 351 2 1 10 0 3 440 0 1 434 0 1 5 1 0 141 1 2 266 12 13 461 6 7 359 0 1 382 0 1 167 15 20 869 chain 32144 chr10 135534747 + 92370813 92371235 MLT2A1 477 - 10 477 80620 39 3 43 211 8 12 19 0 1 142 chain 19946 chr10 135534747 + 92394262 92394555 AluSc8 310 + 10 301 127315 113 0 3 5 40 35 135 chain 82000 chr10 135534747 + 92397968 92398944 MER11C 1089 + 0 1073 42758 58 1 92 41 15 14 819 0 7 42 chain 354217 chr10 135534747 + 92405183 92409900 L1PA6 6164 - 4 4142 11501 842 0 3 21 8 9 418 10 0 6 0 10 177 0 1 254 0 1 46 5 1 6 0 8 1061 0 2 104 0 1 795 594 0 60 0 1 120 0 1 190 chain 53129 chr10 135534747 + 92408950 92409530 L1PA3long 6157 - 1 582 56941 26 0 1 554 chain 16474 chr10 135534747 + 92410357 92410674 Tigger3 1187 + 514 823 136997 21 3 0 27 0 3 9 3 4 19 1 0 25 2 1 38 1 0 4 2 1 5 2 0 73 14 11 9 1 2 32 1 0 25 chain 12297 chr10 135534747 + 92455825 92456063 Tigger3a 397 - 109 358 151024 128 1 11 18 61 62 30 chain 79822 chr10 135534747 + 92464880 92465950 L1PA8 5853 + 4783 5853 43674 227 3 4 69 8 9 99 1 5 325 0 1 42 1 0 44 2 0 71 1 0 8 7 6 47 2 1 19 2 1 92 chain 20362 chr10 135534747 + 92475504 92475880 MSTA 426 + 0 426 126025 104 24 52 41 3 50 11 33 0 5 12 0 29 6 26 108 chain 4358 chr10 135534747 + 92483097 92483156 Kanga1b 635 + 530 587 202472 12 2 0 45 chain 54660 chr10 135534747 + 92489593 92490189 L1PA3long 6157 + 5560 6157 55931 343 0 1 253 chain 29750 chr10 135534747 + 92519130 92519442 AluYb8 318 + 0 312 85653 312 chain 21687 chr10 135534747 + 92519774 92520186 L1MA5A 2387 + 1901 2295 121440 132 1 0 35 47 51 38 2 0 11 0 12 5 2 1 24 16 13 9 27 0 63 chain 74961 chr10 135534747 + 92523219 92524179 L1PA8 5853 - 0 960 46033 93 1 0 16 1 0 56 2 1 6 1 0 73 2 0 14 0 1 29 1 0 128 9 16 355 0 1 55 2 0 116 chain 3485 chr10 135534747 + 92530792 92530831 MER52D 1964 + 1168 1207 215596 39 chain 3622 chr10 135534747 + 92535683 92535726 MER33 330 - 79 122 213305 43 chain 41555 chr10 135534747 + 92553358 92553886 MLT2A2 560 - 0 556 67215 147 0 11 31 1 0 59 0 12 162 0 1 61 0 6 15 2 1 50 chain 17303 chr10 135534747 + 92553912 92554233 Tigger3b 1229 - 694 1014 134781 93 58 54 57 1 2 30 7 6 36 5 8 34 chain 34770 chr10 135534747 + 92567045 92567494 LTR7 482 + 0 482 76517 253 10 41 125 12 14 49 chain 304666 chr10 135534747 + 92567496 92571304 HERVH-int 3825 + 0 3825 13220 212 0 11 250 0 2 55 1 0 11 1 0 7 0 2 20 2 1 9 1 0 9 4 0 14 172 1 11 1 0 16 3 0 8 20 17 35 1 21 57 0 1 8 0 4 401 0 2 463 0 1 36 4 31 291 0 4 1074 0 19 471 0 110 140 chain 36716 chr10 135534747 + 92572566 92573015 LTR7 482 + 0 482 73933 248 0 31 140 12 14 49 chain 15840 chr10 135534747 + 92586816 92587019 L1M1 2793 + 2218 2422 138821 120 0 1 83 chain 14675 chr10 135534747 + 92589138 92589324 L1PA7 6471 - 5 198 142342 115 0 5 35 1 3 35 chain 3749 chr10 135534747 + 92591458 92591500 LTR12C 1709 - 991 1033 211184 42 chain 2251 chr10 135534747 + 92591549 92591575 LTR12C 1709 - 885 911 235956 26 chain 15470 chr10 135534747 + 92591577 92591842 LTR12C 1709 - 506 776 139990 32 68 73 165 chain 7185 chr10 135534747 + 92671611 92671704 MER5A1 166 + 43 135 176181 61 1 0 31 chain 26964 chr10 135534747 + 92694540 92694894 THE1A 353 + 0 353 96391 110 1 0 123 9 9 111 chain 36266 chr10 135534747 + 92703385 92703855 L1PA11 4918 - 414 883 74541 16 1 0 14 2 0 80 2 1 57 1 4 297 chain 531850 chr10 135534747 + 92709071 92715485 L1PA7 6471 - 2 6439 3981 311 0 1 541 1 0 59 2 0 208 1 0 632 0 1 41 0 4 697 0 3 34 0 1 4 1 0 358 0 4 17 0 4 814 12 29 63 19 2 119 0 2 31 1 0 32 0 3 291 0 3 412 1 2 1169 0 1 164 0 2 48 1 0 330 chain 37921 chr10 135534747 + 92722553 92722995 L1PA6 6164 - 2 442 72249 67 2 0 373 chain 8335 chr10 135534747 + 92730783 92730981 MSTA 426 + 222 426 169200 6 6 0 8 2 0 12 61 75 103 chain 32172 chr10 135534747 + 92738109 92738557 MER4A1 472 + 0 472 80579 4 0 1 4 1 0 5 0 2 199 16 37 115 0 3 21 14 16 6 4 0 59 chain 19510 chr10 135534747 + 92751381 92751610 L1PA2 6032 + 5797 6028 128624 89 0 1 122 4 5 14 chain 42392 chr10 135534747 + 92755400 92756118 L1PB1 5432 + 4703 5415 66160 85 11 18 6 0 4 198 9 11 72 8 20 21 1 0 4 5 4 11 5 1 10 2 0 52 7 6 10 1 0 45 1 0 15 1 0 6 2 0 9 9 0 16 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 11 chain 119244 chr10 135534747 + 92763450 92765015 THE1B-int 1605 - 0 1587 31315 205 0 1 798 0 2 113 1 0 5 0 1 17 0 64 119 0 6 157 1 4 17 54 0 78 chain 35693 chr10 135534747 + 92784689 92785146 L1P1 4361 + 3872 4328 75279 278 1 0 38 0 1 110 7 6 23 chain 297936 chr10 135534747 + 92786285 92789684 L1PA4 6152 + 2791 6143 13534 583 51 0 141 0 1 144 0 1 1637 0 4 153 1 0 684 1 0 4 chain 4351 chr10 135534747 + 92791768 92791819 MER5A1 166 - 91 142 202580 51 chain 29830 chr10 135534747 + 92815394 92815704 AluYb9 318 - 8 318 85354 310 chain 79506 chr10 135534747 + 92833916 92834795 L1PA4 6152 + 5272 6151 43822 879 chain 17767 chr10 135534747 + 92848992 92849387 MSTB 430 + 0 391 133522 99 120 123 6 7 0 13 19 20 32 1 0 98 chain 26614 chr10 135534747 + 92855979 92856351 THE1C 375 - 0 373 97618 25 1 0 146 18 19 4 0 1 178 chain 118440 chr10 135534747 + 92856363 92857993 THE1C-int 1605 - 11 1605 31635 9 0 1 36 6 5 55 0 2 142 0 3 166 0 1 306 15 16 267 1 0 123 10 17 112 0 6 212 57 0 98 1 3 14 chain 26544 chr10 135534747 + 92858005 92858368 THE1C 375 - 12 375 97865 14 1 0 138 25 26 185 chain 83482 chr10 135534747 + 92866189 92867291 L1PA11 4918 - 410 1534 42123 20 1 0 16 2 0 65 2 0 13 2 1 31 0 1 20 24 11 13 0 4 33 0 36 74 1 0 95 0 1 222 0 1 183 4 2 106 0 1 175 chain 65951 chr10 135534747 + 92867975 92868692 L1PA3long 6157 - 0 717 50124 717 chain 26558 chr10 135534747 + 92896442 92896740 AluYk4 311 - 13 311 97815 298 chain 207157 chr10 135534747 + 92935467 92937808 L1P1 4361 - 2018 4357 18706 922 0 5 1256 7 0 156 chain 221051 chr10 135534747 + 92940489 92944115 L1PA13 3608 - 120 3495 17813 22 1 0 18 2 0 5 2 0 47 2 0 5 1 0 56 1 0 60 3 1 42 0 4 68 1 0 32 2 1 68 10 0 36 1 2 282 11 8 106 0 2 18 11 0 178 25 28 112 267 74 211 0 12 53 3 4 88 0 3 186 73 0 211 1 0 41 19 40 62 0 4 51 1 0 83 1 4 40 0 3 70 1 23 319 0 1 55 5 7 110 1 0 17 2 0 12 7 5 17 1 0 7 17 13 10 7 6 17 1 0 12 1 0 121 8 6 22 28 30 19 28 16 25 3 0 12 2 1 21 8 9 21 chain 14218 chr10 135534747 + 92941717 92941893 L1PA13 3608 - 1395 1571 143822 176 chain 4137 chr10 135534747 + 92941932 92941984 L1PA13 3608 - 1269 1321 205411 52 chain 2329 chr10 135534747 + 92942528 92942553 L1PA13 3608 - 1958 1983 234990 25 chain 8961 chr10 135534747 + 92947739 92947840 L1PA3long 6157 - 4 104 165825 13 1 0 87 chain 21005 chr10 135534747 + 92947842 92948093 L1P1 4361 + 13 264 123889 251 chain 24318 chr10 135534747 + 92950883 92951277 MER44B 551 - 105 516 108556 125 0 3 87 28 30 21 17 28 24 7 8 85 chain 6346 chr10 135534747 + 92983100 92983291 MER5A 189 + 3 189 182415 16 39 31 19 48 49 16 0 2 53 chain 28917 chr10 135534747 + 92995330 92995698 THE1B 368 + 1 368 89387 171 1 0 8 0 1 4 1 0 183 chain 134736 chr10 135534747 + 93019206 93020710 L1PA4 6152 + 4614 6135 27068 24 0 5 344 0 5 305 0 5 127 0 1 571 0 1 133 chain 18582 chr10 135534747 + 93056828 93057201 L1MA3 4352 + 3976 4324 131281 5 0 1 74 72 50 7 3 0 19 0 6 65 0 2 30 4 0 23 2 0 22 4 3 5 1 0 29 1 0 7 chain 259986 chr10 135534747 + 93063193 93066676 HERVH-int 3825 - 1 3825 15701 239 0 4 243 8 218 261 1 0 100 0 1 73 8 258 16 0 1 311 8 13 306 0 1 71 3 2 63 0 1 64 5 0 108 1 0 40 10 0 231 0 1 315 0 3 101 1 0 82 44 1 27 0 38 10 5 4 13 171 0 24 4 3 7 1 0 37 0 60 106 2 3 31 1 0 50 0 2 281 chain 26915 chr10 135534747 + 93066687 93067086 LTR7 482 - 9 482 96574 40 16 18 48 1 2 59 0 1 8 0 31 44 1 2 105 8 46 69 chain 546073 chr10 135534747 + 93079821 93087762 L1PA3long 6157 - 0 6156 1936 146 0 2 6 0 1 18 4 17 729 1 0 1320 0 1 212 1804 0 16 0 1 1833 0 1 661 4 7 239 0 1 938 3 0 7 chain 150506 chr10 135534747 + 93082267 93084025 SVA_D 2077 - 1 2025 24537 135 0 20 516 0 49 21 0 78 170 0 1 32 1 138 38 40 0 414 0 1 234 7 27 150 chain 2879 chr10 135534747 + 93083187 93083218 SVA_D 2077 - 1595 1626 227392 31 chain 45883 chr10 135534747 + 93089803 93090396 L1PA8A 6298 + 5683 6292 62142 117 0 18 344 35 33 97 chain 21815 chr10 135534747 + 93102341 93102698 THE1D 372 - 0 365 120959 38 1 0 88 55 53 65 0 1 44 5 0 9 0 14 43 0 1 9 chain 26320 chr10 135534747 + 93112886 93113212 THE1C 375 + 0 336 98739 29 0 1 16 0 11 181 2 0 98 chain 163773 chr10 135534747 + 93121283 93123162 L1PA5 6144 - 3044 4925 22827 966 0 1 832 0 1 81 chain 267088 chr10 135534747 + 93123162 93126195 L1PA5 6144 + 3092 6131 15337 84 1 0 495 10 7 909 0 1 858 1 0 220 0 1 334 0 1 98 0 8 23 chain 65354 chr10 135534747 + 93130028 93130760 L1PA4 6152 - 2241 2976 50324 658 0 3 74 chain 197898 chr10 135534747 + 93130760 93132984 L1PA4 6152 + 3913 6143 19365 85 0 1 49 0 1 1843 1 0 111 0 1 34 0 1 5 0 3 96 chain 59508 chr10 135534747 + 93177145 93177812 L1PA4 6152 - 16 689 53102 131 4 10 532 chain 14771 chr10 135534747 + 93181161 93181376 MER30 238 - 5 238 142027 40 0 3 57 1 27 10 11 0 96 chain 457515 chr10 135534747 + 93186609 93191688 L1PA3long 6157 - 0 5054 8491 756 0 3 187 28 0 1944 1 0 4 0 1 2159 chain 458554 chr10 135534747 + 93197848 93203431 L1PA7 6471 - 2 5602 8456 10 0 6 290 0 1 150 0 2 5 0 2 466 0 1 421 6 0 130 0 1 491 8 12 168 11 14 38 1 0 759 1 0 57 0 3 277 1 11 252 9 13 79 0 1 102 0 3 63 23 0 52 0 1 261 0 1 413 1 0 7 1 0 271 0 2 420 9 16 53 4 3 220 1 0 52 chain 475494 chr10 135534747 + 93205344 93211286 L1PA7 6471 + 0 6469 7871 412 6 5 24 0 514 186 4 3 53 9 16 420 0 2 271 1 0 7 1 0 413 0 1 261 0 1 44 23 0 71 0 3 102 0 1 79 9 13 252 1 11 277 0 3 57 1 0 597 21 0 81 3 6 54 0 1 189 1 2 85 2 6 143 0 12 19 0 1 174 1 0 167 2 1 15 0 5 564 1 5 71 0 2 43 0 1 61 1 4 62 0 4 84 14 4 345 12 13 146 chain 193730 chr10 135534747 + 93214331 93216505 L1PA5 6144 - 1 2172 19706 10 1 3 682 1 0 71 1 0 793 3 1 289 1 0 322 chain 9571 chr10 135534747 + 93219598 93219730 Tigger3a 397 + 200 325 162735 74 7 0 51 chain 28105 chr10 135534747 + 93236655 93236959 AluYb8 318 + 0 303 92634 132 1 0 171 chain 29527 chr10 135534747 + 93250366 93250675 AluYk12 309 + 0 309 86539 309 chain 589 chr10 135534747 + 93262837 93263020 L1PA15 4387 + 3835 4011 123513 48 10 9 41 1 0 60 5 0 18 chain 551000 chr10 135534747 + 93263020 93269044 L1PA2 6032 + 0 6032 1311 256 1 0 108 0 1 1354 0 5 2508 0 4 924 1 0 872 chain 1053 chr10 135534747 + 93269068 93269395 L1PA15 4387 + 4013 4357 123513 87 7 6 16 7 11 51 8 7 11 4 0 15 8 0 22 0 31 44 3 1 14 2 0 28 chain 13820 chr10 135534747 + 93281961 93282144 L1PA11 4918 + 4283 4463 145180 48 1 0 62 2 1 13 2 1 55 chain 412670 chr10 135534747 + 93290936 93295536 L1PA5 6144 + 1527 6137 9727 2315 0 1 740 0 1 532 1 0 73 1 9 89 0 1 849 chain 118281 chr10 135534747 + 93320776 93322331 THE1C-int 1605 - 15 1605 31697 182 1 0 108 0 3 57 3 2 63 1 0 21 1 2 391 2 12 5 0 2 74 4 13 144 2 0 34 0 2 14 9 16 112 0 6 169 1 0 140 6 7 11 chain 31392 chr10 135534747 + 93328781 93329296 MER51A 677 - 21 677 81832 69 8 0 146 0 164 84 90 75 118 chain 5809 chr10 135534747 + 93330449 93330518 MLT1A0 366 + 244 313 187056 69 chain 28778 chr10 135534747 + 93332346 93332650 AluYb8 318 - 14 318 89988 304 chain 59234 chr10 135534747 + 93366514 93367157 L1PA3long 6157 + 5514 6157 53258 643 chain 15305 chr10 135534747 + 93383663 93384019 THE1B 368 + 0 368 140479 47 41 48 16 23 24 34 67 71 128 chain 519203 chr10 135534747 + 93403603 93410052 L1PA7 6471 + 10 6466 5241 42 18 10 350 2 0 102 19 2 503 0 1 295 0 1 294 0 5 503 46 46 82 4 0 277 4 9 109 3 1 42 4 0 76 1 2 338 7 11 181 0 2 16 3 0 204 10 9 26 0 4 456 1 0 17 1 0 235 2 1 39 9 12 167 9 13 181 0 4 140 1 5 161 0 1 23 0 1 338 1 10 264 1 0 45 0 6 780 0 1 5 4 0 8 chain 24384 chr10 135534747 + 93415597 93415887 AluY 311 + 8 301 108168 39 0 6 80 3 0 168 chain 32036 chr10 135534747 + 93423542 93424332 LTR46 455 - 0 455 80804 41 10 6 103 5 4 14 1 0 98 7 5 45 329 2 137 chain 116693 chr10 135534747 + 93462904 93464328 L1PA7 6471 - 5 1398 32225 185 1 0 161 0 1 500 0 5 233 0 9 199 50 5 95 chain 16869 chr10 135534747 + 93478276 93478619 MSTA 426 - 21 401 135915 75 22 30 42 56 64 43 27 48 78 chain 22635 chr10 135534747 + 93482532 93482818 AluSg 306 + 11 306 117397 32 1 10 253 chain 307384 chr10 135534747 + 93491693 93495146 L1PA5 6144 - 130 3612 13111 245 0 1 232 0 3 234 0 5 449 0 3 227 1 14 151 0 3 456 0 1 1458 chain 12052 chr10 135534747 + 93504234 93504374 L1PA5 6144 + 6002 6142 151975 140 chain 543995 chr10 135534747 + 93509374 93515395 L1PA3long 6157 + 0 6156 2211 152 0 1 628 0 128 832 0 2 453 0 7 78 1 0 4 0 1 106 0 4 1958 0 4 445 9 0 158 0 1 992 3 0 202 chain 13930 chr10 135534747 + 93546683 93546885 Tigger1 2417 - 0 197 144824 69 12 11 86 4 0 31 chain 25870 chr10 135534747 + 93549884 93550175 AluSq10 312 + 9 300 100569 291 chain 68129 chr10 135534747 + 93553326 93554246 L1MA3 4352 + 2374 3461 49193 106 8 0 86 12 164 89 0 25 35 0 4 116 0 1 212 1 0 175 6 0 74 chain 27957 chr10 135534747 + 93569141 93569439 AluYk11 308 + 0 298 93141 298 chain 7994 chr10 135534747 + 93641660 93641755 MLT1A 405 - 253 348 171092 95 chain 2706 chr10 135534747 + 93644885 93644994 MER5B 177 + 23 151 230158 16 65 84 28 chain 80425 chr10 135534747 + 93653709 93654647 LTR13A 966 + 0 937 43419 773 1 0 164 chain 21653 chr10 135534747 + 93656682 93657008 THE1A 353 + 25 353 121561 22 0 1 33 14 13 11 31 33 215 chain 19830 chr10 135534747 + 93705873 93706123 AluSp 311 + 39 289 127712 17 1 2 74 1 0 157 chain 20226 chr10 135534747 + 93707770 93708008 L1PA6 6164 - 2 240 126445 238 chain 3743 chr10 135534747 + 93758414 93758469 L1ME1 1623 - 138 187 211280 40 6 0 9 chain 7704 chr10 135534747 + 93764061 93764212 Tigger4a 237 - 61 236 172913 93 39 63 19 chain 10973 chr10 135534747 + 93774541 93774710 Tigger3a 397 - 45 258 156305 68 10 40 60 2 6 7 0 10 22 chain 3098 chr10 135534747 + 93776989 93777024 L2a 937 - 174 209 222935 35 chain 55240 chr10 135534747 + 93817941 93820464 L1MA1 4479 + 1293 4190 55559 11 0 3 57 365 0 50 0 3 107 40 22 230 933 995 33 1 0 64 287 991 88 9 5 22 7 6 83 0 5 10 2 1 28 2 0 35 1 0 9 1 0 11 23 14 14 chain 11589 chr10 135534747 + 93855996 93856152 MER2 342 + 150 319 153931 86 3 16 67 chain 23980 chr10 135534747 + 93876778 93877068 AluSg7 307 - 6 297 110447 158 11 12 121 chain 310816 chr10 135534747 + 93892370 93895925 L1PA6 6164 + 2596 6162 12970 925 0 4 324 0 1 41 5 2 164 0 1 310 0 4 940 0 4 846 chain 34651 chr10 135534747 + 93898290 93898749 L1MA3 4352 + 3414 3869 76688 321 2 0 93 9 7 34 chain 142983 chr10 135534747 + 93899845 93901398 L1PA3long 6157 + 4602 6157 25655 262 0 2 1291 chain 21914 chr10 135534747 + 93922920 93923182 AluSq2 311 + 11 275 120569 121 0 2 141 chain 24702 chr10 135534747 + 93928228 93928544 THE1C 375 + 0 313 106424 120 3 0 20 1 0 33 4 5 135 chain 4585 chr10 135534747 + 93940423 93940592 MER5A 189 - 9 188 199800 12 0 6 9 11 6 18 76 85 43 chain 8963 chr10 135534747 + 93949455 93949567 AluSc5 308 - 2 113 165809 36 2 0 43 0 1 31 chain 28250 chr10 135534747 + 93987341 93987647 AluYf4 310 - 4 310 92109 306 chain 17147 chr10 135534747 + 94007872 94008128 MER2 342 - 53 305 135175 22 12 8 147 0 3 27 16 13 32 chain 4778 chr10 135534747 + 94026937 94027073 MER58C 217 - 2 149 197602 23 7 9 22 47 55 4 0 1 33 chain 7534 chr10 135534747 + 94035925 94036021 L1MB8 1703 - 283 384 173951 28 0 4 42 0 1 26 chain 8853 chr10 135534747 + 94061427 94061533 MER2 342 - 64 170 166360 106 chain 29712 chr10 135534747 + 94067623 94068322 MER41A 554 - 159 550 85788 66 309 0 111 5 7 28 0 3 144 4 0 32 chain 27668 chr10 135534747 + 94079054 94079350 AluYg6 310 - 15 310 94158 33 1 0 262 chain 24415 chr10 135534747 + 94082489 94082783 AluSc 308 - 14 299 107999 10 9 0 275 chain 7683 chr10 135534747 + 94094224 94094318 HY3 101 + 5 99 173026 94 chain 24277 chr10 135534747 + 94103320 94103614 AluSp 311 - 6 300 108795 294 chain 31004 chr10 135534747 + 94110074 94110519 LTR3A 482 - 39 470 82501 62 0 1 115 52 37 118 0 1 84 1 0 13 chain 154824 chr10 135534747 + 94118876 94122548 L1MA3 4352 - 1205 3461 23997 137 1 2 425 4 0 34 189 0 32 4 0 147 3 7 50 1 0 56 7 17 50 325 0 127 17 15 272 0 1 94 8 8 20 1 0 27 13 13 28 17 23 34 1 0 180 3 0 22 11 14 50 0 5 26 0 3 9 5 8 72 934 8 21 1 0 29 1 0 26 8 14 150 chain 40069 chr10 135534747 + 94124678 94125170 L1M1 2793 - 971 1486 69225 166 0 18 71 0 2 176 0 3 79 chain 33632 chr10 135534747 + 94132452 94133183 MLT2A1 477 + 0 477 78199 140 0 1 28 1 5 119 0 1 91 301 41 51 chain 4028 chr10 135534747 + 94134609 94134702 SVA_A 1864 + 581 634 206958 32 3 0 11 37 0 10 chain 9539 chr10 135534747 + 94135150 94135325 SVA_F 1814 + 648 942 68588 12 5 4 41 2 122 28 1 0 32 0 1 54 chain 94233 chr10 135534747 + 94135325 94137209 SVA_F 1814 + 647 1814 38283 13 5 4 41 6 46 17 200 1 6 1 0 13 37 0 28 1 0 11 499 0 28 1 0 25 0 1 66 0 15 47 1 2 116 33 0 43 1 0 17 1 0 627 chain 2595 chr10 135534747 + 94135407 94135435 SVA_F 1814 + 1264 1291 98364 10 1 0 17 chain 3718 chr10 135534747 + 94135457 94135506 SVA_F 1814 + 1089 1138 146345 49 chain 2671 chr10 135534747 + 94135506 94135555 SVA_F 1814 + 962 1011 68588 49 chain 2352 chr10 135534747 + 94135555 94135586 SVA_F 1814 + 1187 1219 146345 27 0 1 4 chain 2017 chr10 135534747 + 94135627 94135664 SVA_F 1814 + 1031 1068 68588 37 chain 10302 chr10 135534747 + 94135704 94135893 SVA_F 1814 + 1108 1291 68588 62 4 0 17 1 0 87 1 0 17 chain 12263 chr10 135534747 + 94135893 94136146 SVA_F 1814 + 925 1187 74813 22 0 15 39 7 4 165 3 0 17 chain 3193 chr10 135534747 + 94136147 94136182 SVA_F 1814 + 1187 1222 221062 35 chain 11882 chr10 135534747 + 94140910 94141103 LTR39 781 - 176 369 152690 62 21 21 5 1 0 12 5 6 87 chain 4370 chr10 135534747 + 94202533 94202584 MER67B 652 - 237 288 202325 51 chain 25330 chr10 135534747 + 94203951 94204249 AluSp 311 + 2 300 103070 298 chain 7475 chr10 135534747 + 94220274 94220374 MER30 238 - 10 113 174304 29 3 0 41 0 6 27 chain 24336 chr10 135534747 + 94251745 94252039 AluY 311 + 10 305 108440 122 0 1 172 chain 24210 chr10 135534747 + 94261158 94261449 AluSc 308 + 12 303 109150 291 chain 28999 chr10 135534747 + 94315648 94315957 AluYb8 318 + 0 309 88987 309 chain 34169 chr10 135534747 + 94350839 94351327 LTR10D 510 + 0 510 77392 14 0 3 51 1 7 10 1 0 21 0 7 69 4 7 42 6 5 26 0 1 96 12 16 135 chain 25459 chr10 135534747 + 94359405 94359696 AluSc 308 - 6 297 102415 291 chain 26792 chr10 135534747 + 94365239 94365542 AluSp 311 - 8 311 97008 303 chain 26964 chr10 135534747 + 94380334 94380698 THE1B 368 - 4 368 96392 172 2 0 18 6 5 124 0 5 25 2 0 15 chain 11329 chr10 135534747 + 94384304 94384501 L1PA15 4387 - 60 246 154966 11 2 0 46 17 14 38 3 2 10 4 0 21 2 1 43 chain 24535 chr10 135534747 + 94390352 94390647 AluSp 311 + 10 305 107340 99 1 2 67 1 0 127 chain 29335 chr10 135534747 + 94391111 94391417 AluYb8 318 - 12 318 87378 306 chain 2947 chr10 135534747 + 94420263 94420294 U2 167 - 135 166 226143 31 chain 133587 chr10 135534747 + 94433484 94435736 SVA_F 1814 - 1 1479 27303 626 1 0 10 1 0 166 1 0 10 3 0 39 0 15 92 549 0 28 236 2 490 chain 1543 chr10 135534747 + 94434433 94434492 SVA_F 1814 - 845 919 146178 7 0 15 52 chain 14033 chr10 135534747 + 94434578 94434726 SVA_F 1814 - 540 688 144446 148 chain 2589 chr10 135534747 + 94434726 94434753 SVA_F 1814 - 689 716 140648 27 chain 17357 chr10 135534747 + 94434753 94434936 SVA_F 1814 - 540 723 134637 183 chain 3516 chr10 135534747 + 94434939 94434981 SVA_F 1814 - 916 959 215133 17 0 1 25 chain 14832 chr10 135534747 + 94435010 94435173 SVA_F 1814 - 571 734 133834 163 chain 4655 chr10 135534747 + 94435196 94435246 SVA_F 1814 - 899 949 137757 50 chain 7259 chr10 135534747 + 94437496 94437722 L1PA15 4387 + 4157 4366 175715 16 13 12 22 71 63 43 2 0 14 10 5 24 1 0 10 chain 13283 chr10 135534747 + 94440744 94440966 MER30 238 - 0 238 147158 64 0 1 19 16 40 8 10 0 75 8 9 22 chain 10767 chr10 135534747 + 94441064 94441527 L1MB7 1623 - 148 553 157120 23 278 228 11 10 9 7 5 0 9 3 1 117 chain 8338 chr10 135534747 + 94470259 94470365 HY1 111 - 2 111 169184 30 0 1 37 0 2 39 chain 27593 chr10 135534747 + 94472727 94473094 L1P4 1494 - 121 484 94364 5 2 0 18 1 0 29 0 1 171 1 0 101 1 0 38 chain 3444 chr10 135534747 + 94508750 94508788 MSTC 436 - 14 52 216287 38 chain 30662 chr10 135534747 + 94554219 94554631 L1PB1 5432 - 3852 4247 83102 183 16 0 124 4 1 5 0 3 35 1 0 44 chain 256073 chr10 135534747 + 94554667 94558449 L1PB1 5432 + 1580 5413 15932 392 14 20 51 0 12 203 8 11 156 0 6 15 38 11 39 5 7 234 0 1 6 0 1 59 0 413 477 356 0 34 1 4 231 0 1 251 14 13 135 0 1 264 1 0 183 29 30 260 1 4 12 0 1 20 1 0 5 8 16 10 6 4 47 2 1 9 8 7 43 1 0 16 24 12 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 29517 chr10 135534747 + 94579316 94579684 Tigger1 2417 - 192 561 86581 119 0 1 249 chain 30436 chr10 135534747 + 94583214 94583532 AluYb8 318 + 0 318 83557 318 chain 74404 chr10 135534747 + 94672040 94672915 MER11D 897 - 0 897 46313 198 0 1 87 0 23 300 18 16 272 chain 24879 chr10 135534747 + 94705765 94706063 AluY 311 + 0 293 105463 126 5 0 167 chain 27012 chr10 135534747 + 94712319 94712811 L1PA16 3655 - 31 450 96248 21 5 0 12 48 39 203 6 0 5 51 0 54 6 4 81 chain 88972 chr10 135534747 + 94726069 94727045 L1PA3long 6157 - 23 999 40020 239 1 0 679 0 1 57 chain 176435 chr10 135534747 + 94734301 94736426 SVA_D 2077 + 13 2070 21311 12 1 0 41 0 1 818 40 0 18 3 0 15 6 42 41 0 8 25 1 2 7 0 1 188 50 0 148 33 8 13 4 0 37 4 0 291 0 10 283 0 2 46 chain 3600 chr10 135534747 + 94735517 94735567 SVA_D 2077 + 1056 1105 71609 46 1 0 3 chain 2376 chr10 135534747 + 94735715 94735748 SVA_D 2077 + 1253 1286 71609 33 chain 21382 chr10 135534747 + 94802717 94802990 AluSg7 307 - 23 306 122578 12 0 10 107 18 18 136 chain 13359 chr10 135534747 + 94807887 94808031 L1PA5 6144 + 6000 6144 146850 144 chain 11580 chr10 135534747 + 94808231 94808354 L1PA3long 6157 + 6034 6157 153983 123 chain 4555 chr10 135534747 + 94808736 94808817 L1MB8 1703 + 1244 1326 200163 40 15 16 26 chain 3342 chr10 135534747 + 94817379 94817416 MER57A1 433 + 324 361 218201 37 chain 3714 chr10 135534747 + 94846643 94846687 MIR 256 - 159 203 211719 44 chain 11337 chr10 135534747 + 94870067 94870258 LTR49 580 - 351 540 154929 49 16 15 30 1 0 15 10 9 35 0 1 35 chain 36291 chr10 135534747 + 94887706 94888169 LTR2 463 + 0 462 74513 72 0 1 52 0 3 82 28 23 229 chain 24399 chr10 135534747 + 94889359 94889656 AluSq2 311 + 2 304 108083 85 0 5 212 chain 20442 chr10 135534747 + 94918760 94919120 THE1B 368 + 0 368 125781 107 7 10 49 46 43 4 0 1 10 10 18 60 11 10 56 chain 39895 chr10 135534747 + 94945110 94945966 L1PA13 3608 - 140 646 69461 20 2 0 5 2 0 47 2 0 35 339 0 27 1 0 61 2 0 114 1 0 31 1 0 166 chain 9588 chr10 135534747 + 94977018 94977150 MLT1B 390 - 12 145 162648 105 1 2 26 chain 30531 chr10 135534747 + 94988660 94989094 MLT2A1 477 - 0 477 83368 49 9 43 61 1 0 19 11 13 119 1 5 25 0 1 101 0 3 38 chain 465157 chr10 135534747 + 94989094 94995040 HERVL-int 5654 - 0 5654 8213 269 0 1 155 5 4 27 0 3 213 10 0 240 0 1 240 3 8 384 0 2 53 0 28 96 5 1 487 1 4 102 0 2 275 0 1 408 0 2 257 24 9 205 1 0 88 0 9 1318 20 19 217 6 10 479 321 0 37 chain 14351 chr10 135534747 + 95013016 95013176 L1PA3long 6157 + 5997 6157 143377 160 chain 23844 chr10 135534747 + 95015730 95016027 AluSp 311 - 18 311 111220 161 1 0 4 4 1 127 chain 29384 chr10 135534747 + 95028585 95028972 MER51B 395 - 1 395 87149 59 0 4 86 1 0 158 1 18 29 13 0 40 chain 33543 chr10 135534747 + 95042225 95043375 MER41A 554 - 0 554 78330 65 707 102 44 0 2 14 0 1 89 0 7 63 1 0 167 chain 25655 chr10 135534747 + 95099554 95099854 AluYf5 307 + 0 298 101470 260 6 4 34 chain 9940 chr10 135534747 + 95104369 95104494 L1PA7 6471 + 6340 6470 160874 112 1 6 12 chain 29981 chr10 135534747 + 95107027 95107340 AluYb8 318 + 0 313 84868 313 chain 4359 chr10 135534747 + 95112791 95112847 MER75A 77 - 21 77 202460 56 chain 34906 chr10 135534747 + 95133624 95134031 L1PA6 6164 - 4 410 76337 149 9 8 249 chain 5088 chr10 135534747 + 95134089 95134148 MIRb 242 - 104 163 194194 59 chain 20270 chr10 135534747 + 95212231 95212471 L1PA3long 6157 + 5916 6157 126318 128 0 1 112 chain 37641 chr10 135534747 + 95227213 95227620 L1PA4 6152 + 5473 5880 72634 407 chain 7237 chr10 135534747 + 95270347 95270437 5S 121 - 31 121 175849 90 chain 537962 chr10 135534747 + 95280740 95286845 L1PA4 6152 + 10 6152 3156 118 0 14 901 0 2 96 1 7 675 2 1 1486 0 1 1040 0 4 943 0 4 82 1 0 208 0 1 224 0 1 220 0 1 102 0 5 6 chain 470974 chr10 135534747 + 95294742 95301174 L1PA7 6471 + 6 6467 8002 190 16 15 19 46 46 24 89 286 90 33 34 11 5 15 44 14 89 19 15 15 143 1 22 311 1 0 116 0 3 665 0 4 331 0 18 6 293 0 114 14 15 444 5 9 84 0 10 286 3 2 183 0 2 5 12 10 321 2 0 1201 1 0 162 10 1 172 1 2 4 0 1 70 2 1 686 3 4 112 14 5 39 chain 21394 chr10 135534747 + 95345829 95346226 THE1C 375 + 0 375 122528 63 25 2 42 32 36 32 0 3 8 17 12 15 25 24 138 chain 40131 chr10 135534747 + 95365796 95366367 L1PA17 2846 + 2117 2693 69137 375 5 7 18 6 1 17 1 0 57 2 0 8 1 0 32 1 0 6 16 29 26 chain 23806 chr10 135534747 + 95419197 95419564 THE1B 368 - 0 368 111442 26 3 0 98 33 35 7 0 1 32 1 0 99 5 7 63 chain 23262 chr10 135534747 + 95428284 95428639 THE1A 353 - 2 353 114373 44 1 0 173 17 15 6 0 2 17 9 8 38 0 1 4 1 0 30 2 0 13 chain 49720 chr10 135534747 + 95456173 95456809 L1PA8A 6298 + 5642 6291 59217 525 7 15 6 7 0 9 1 14 44 1 0 36 chain 10434 chr10 135534747 + 95458585 95458846 MER30 238 + 20 235 158552 75 40 65 13 54 0 3 17 0 59 chain 45584 chr10 135534747 + 95498312 95498968 L1MA4 2864 + 2028 2675 62425 5 0 1 66 0 1 17 1 0 71 7 6 31 11 9 8 1 0 91 3 0 159 8 6 144 1 0 32 chain 2563 chr10 135534747 + 95505904 95505954 MIRc 230 - 112 163 232340 20 8 9 22 chain 26041 chr10 135534747 + 95510122 95510614 L1MA5A 2387 - 18 450 99856 10 2 0 19 1 0 10 1 0 13 23 11 11 1 0 58 35 5 15 3 0 37 1 0 25 2 0 48 1 0 7 3 0 29 3 1 27 2 0 9 3 4 93 chain 9470 chr10 135534747 + 95531105 95531242 L1PB4 2604 + 2409 2553 163216 38 2 3 35 1 7 61 chain 23081 chr10 135534747 + 95562563 95562921 THE1B 368 + 0 368 115236 128 1 0 40 10 8 25 0 1 5 3 7 22 3 12 56 2 0 6 1 2 39 0 1 4 1 0 12 chain 15008 chr10 135534747 + 95589419 95589684 THE1B 368 - 84 368 141297 41 6 5 6 1 0 18 0 4 10 0 3 28 1 0 52 8 9 22 25 39 47 chain 24272 chr10 135534747 + 95600122 95600429 AluY 311 + 0 299 108835 123 1 0 6 5 0 147 0 2 15 4 0 6 chain 95892 chr10 135534747 + 95604759 95606182 LTR12C 1709 + 0 1709 37847 53 3 0 157 12 8 44 5 6 70 0 43 83 12 7 46 0 1 132 0 278 184 9 6 29 15 17 44 51 20 51 0 1 113 0 1 17 49 52 10 0 3 151 1 0 82 chain 9009 chr10 135534747 + 95611196 95611306 MER57B2 428 + 7 117 165546 110 chain 22788 chr10 135534747 + 95615552 95615982 MER51E 476 - 1 476 116646 43 4 0 13 118 131 117 0 35 23 3 4 109 chain 26827 chr10 135534747 + 95644225 95644667 L1MA3 4352 + 847 2421 96882 21 20 3 7 0 9 43 6 7 104 14 1153 120 1 0 10 7 8 89 chain 527574 chr10 135534747 + 95687457 95693583 L1PA5 6144 + 0 6144 4443 120 0 14 225 3 1 113 3 17 200 0 18 320 1 2 4 1 0 135 9 0 428 0 1 712 1 0 5 0 1 925 19 1 1415 0 1 74 0 2 560 1 0 841 2 0 9 chain 2943 chr10 135534747 + 95706077 95706114 MIR 256 - 122 159 226246 37 chain 33677 chr10 135534747 + 95712757 95713132 L1PA2 6032 - 0 374 78133 7 2 0 143 0 1 223 chain 27547 chr10 135534747 + 95722304 95722663 MLT2A1 477 - 95 477 94514 209 6 10 22 0 1 9 0 18 113 chain 140508 chr10 135534747 + 95729820 95731383 SVA_D 2077 + 58 2077 26071 585 1 0 247 0 396 28 0 1 35 0 61 650 1 0 16 chain 7404 chr10 135534747 + 95762643 95762777 LTR24 460 - 0 133 174746 68 30 29 36 chain 5787 chr10 135534747 + 95806802 95806882 HY4 93 - 9 93 187298 15 2 3 24 0 3 39 chain 22590 chr10 135534747 + 95838250 95838529 AluSg7 307 - 15 297 117634 80 0 1 79 0 1 23 1 2 96 chain 16186 chr10 135534747 + 95839173 95839367 L1PA7 6471 + 6277 6469 137801 182 2 0 10 chain 29672 chr10 135534747 + 95853687 95853997 AluYa5 310 - 0 310 85950 310 chain 7169 chr10 135534747 + 95863328 95863414 L1PA7 6471 + 6381 6467 176274 86 chain 84646 chr10 135534747 + 95874518 95875503 L1PA5 6144 - 0 982 41660 11 1 3 21 10 0 584 0 1 223 0 4 135 chain 25849 chr10 135534747 + 95878172 95878531 THE1B 368 + 7 367 100662 6 2 0 22 5 10 72 6 4 51 2 1 32 0 1 161 chain 17978 chr10 135534747 + 95911703 95911941 L1P4 1494 + 1073 1312 132913 33 1 0 104 0 1 45 1 2 54 chain 6785 chr10 135534747 + 95915424 95915502 U6 107 - 29 107 179067 78 chain 517013 chr10 135534747 + 95919393 95925318 L1PA4 6152 - 17 6152 5480 1120 0 13 361 52 0 289 0 4 1038 0 1 1388 0 5 614 0 16 294 0 1 255 2 1 162 0 6 252 0 217 98 chain 25547 chr10 135534747 + 95927277 95927564 L1PA4 6152 - 1 314 102004 31 1 0 148 0 27 107 chain 34660 chr10 135534747 + 95952055 95952576 L1PA16 3655 - 36 543 76677 16 5 0 7 23 4 14 3 0 200 0 12 42 0 1 32 2 0 86 2 1 69 7 10 13 chain 47572 chr10 135534747 + 96017132 96017676 L1PA5 6144 + 5589 6132 60789 197 1 0 24 0 1 7 1 0 314 chain 21251 chr10 135534747 + 96019499 96019857 THE1B 368 - 0 368 123018 56 7 6 56 37 52 16 2 1 12 1 0 45 6 1 58 1 4 61 chain 70716 chr10 135534747 + 96031484 96032469 MER11A 1151 - 0 1151 48062 60 7 6 113 0 1 24 6 12 18 0 9 49 7 41 15 1 0 54 0 4 55 1 0 8 6 9 114 1 0 20 0 1 4 0 1 89 0 1 54 0 1 83 0 11 64 1 0 20 0 1 10 2 0 9 0 1 35 0 99 55 chain 9167 chr10 135534747 + 96095756 96095891 MER85 139 + 0 139 164720 10 3 0 86 7 14 29 chain 35573 chr10 135534747 + 96119302 96119788 L1MA3 4352 + 3384 3863 75445 197 0 1 102 6 0 37 16 12 12 0 1 43 0 1 73 chain 7055 chr10 135534747 + 96137251 96137379 MER4C 627 - 247 384 177066 18 34 43 76 chain 40681 chr10 135534747 + 96144242 96144705 LTR2 463 + 0 463 68320 463 chain 428890 chr10 135534747 + 96146525 96151902 Harlequin-int 5206 + 125 5206 9335 251 4 0 16 1 2 288 1 0 20 0 1 40 310 0 71 0 1 392 0 3 964 0 1 391 1 0 187 1 0 348 1 0 180 18 17 385 0 1 4 6 5 535 0 12 417 1 0 266 0 5 278 chain 39705 chr10 135534747 + 96151902 96152361 LTR2 463 + 0 463 69747 55 0 3 130 0 1 274 chain 18166 chr10 135534747 + 96154487 96154833 MER52C 1267 - 0 269 132420 50 2 1 71 6 0 8 1 6 7 2 0 25 3 0 71 70 0 30 chain 3044 chr10 135534747 + 96155794 96155855 MER52C 1267 - 1223 1267 224131 29 19 2 13 chain 23829 chr10 135534747 + 96157142 96157440 AluSc 308 - 12 308 111313 169 1 0 17 2 1 109 chain 4281 chr10 135534747 + 96158405 96158452 L1MB5 1630 - 177 224 203462 47 chain 8778 chr10 135534747 + 96201344 96201474 L1PA8 5853 - 0 128 166773 92 4 3 17 2 1 15 chain 28199 chr10 135534747 + 96210395 96210870 L1MA5A 2387 + 1870 2290 92314 129 1 0 34 1 0 36 1 0 38 1 0 50 3 1 9 21 17 31 3 0 15 42 0 60 chain 13322 chr10 135534747 + 96216858 96217086 L1PA8 5853 - 0 223 146997 49 12 12 31 10 9 8 1 0 46 1 0 10 1 0 9 2 1 48 chain 2907 chr10 135534747 + 96218906 96218938 LTR12C 1709 - 800 832 226927 32 chain 2397 chr10 135534747 + 96219036 96219067 LTR12C 1709 - 692 723 202839 31 chain 6714 chr10 135534747 + 96219067 96219159 LTR12C 1709 - 641 774 179585 63 3 44 26 chain 20606 chr10 135534747 + 96232829 96233147 AluSq 315 + 0 305 125271 45 23 25 64 15 10 153 10 0 8 chain 8066 chr10 135534747 + 96256986 96257089 L1PA2 6032 - 0 94 170667 11 9 0 83 chain 29541 chr10 135534747 + 96274653 96274963 AluYa5 310 - 0 310 86475 310 chain 24353 chr10 135534747 + 96276190 96276469 L1PA5 6144 - 12 292 108354 6 0 2 249 2 1 22 chain 19852 chr10 135534747 + 96284227 96284502 AluSc5 308 + 12 296 127648 124 8 5 6 0 3 101 0 7 16 3 5 17 chain 7929 chr10 135534747 + 96285758 96285907 L1MA5A 2387 - 84 201 171449 8 1 0 59 10 0 4 18 0 17 3 0 29 chain 8957 chr10 135534747 + 96302858 96302967 LTR45 522 - 142 251 165842 109 chain 3197 chr10 135534747 + 96307477 96307513 MIR 256 - 121 157 220988 36 chain 21544 chr10 135534747 + 96319797 96320061 AluSg7 307 - 17 282 121988 163 0 1 101 chain 23561 chr10 135534747 + 96327064 96327342 AluSp 311 - 21 300 112791 246 0 1 32 chain 3909 chr10 135534747 + 96330600 96330831 MER58A 224 - 9 222 208726 39 23 29 12 24 17 17 101 84 15 chain 28493 chr10 135534747 + 96337536 96337854 AluYb8 318 + 0 315 91215 124 4 2 141 1 0 48 chain 164275 chr10 135534747 + 96379243 96381184 L1PA7 6471 - 13 1964 22773 133 4 18 98 0 3 550 2 0 42 7 1 153 0 1 952 chain 59917 chr10 135534747 + 96381192 96381924 L1PA7 6471 + 3748 4484 52866 87 1 3 167 3 4 89 0 1 385 chain 462203 chr10 135534747 + 96394111 96400539 L1PA6 6164 - 7 6161 8318 109 1 0 66 1 0 5 1 2 645 0 1 280 1 2 5 1 0 206 0 2 43 22 0 423 0 11 449 1 3 583 5 1 131 0 1 209 0 2 68 0 1 326 0 4 227 13 17 138 0 1 482 0 1 146 0 1 24 1 2 212 0 2 275 8 9 109 0 3 94 12 29 62 21 0 146 109 33 18 26 25 14 12 2 45 1 2 9 20 1 23 304 112 39 19 34 39 8 9 191 chain 345671 chr10 135534747 + 96410692 96414926 HERVL-int 5654 + 0 4347 11741 87 0 1 390 3 6 189 4 6 86 0 35 813 0 2 100 1 2 359 1 10 617 0 1 663 4 0 171 1 0 341 1 7 264 0 58 139 chain 491283 chr10 135534747 + 96416440 96423463 L1PA5 6144 - 6 6144 7306 136 0 1 11 8 9 228 0 11 197 5 352 505 4 3 906 1245 0 180 1 0 36 1 2 207 0 1 1039 2 1 187 0 3 394 0 1 529 9 5 145 1 0 488 4 6 555 chain 103920 chr10 135534747 + 96418483 96419680 L1PA5 6144 - 12 1213 35746 162 1 0 466 0 1 202 0 4 366 chain 30523 chr10 135534747 + 96442372 96442871 MER61D 487 - 17 487 83381 19 14 19 100 11 10 20 11 6 17 8 5 201 31 6 67 chain 2724 chr10 135534747 + 96449092 96449208 MER74B 573 + 2 114 229844 16 1 0 14 1 0 4 8 7 11 44 43 17 chain 244125 chr10 135534747 + 96450132 96452899 L1PA4 6152 + 3329 6120 16553 233 0 9 200 0 1 185 0 2 1308 0 1 33 6 7 69 0 1 6 0 1 504 0 8 223 chain 26806 chr10 135534747 + 96454903 96455230 L1PA7 6471 - 6 330 96952 6 3 0 318 chain 7387 chr10 135534747 + 96455230 96455313 L1P3 4156 - 1900 1983 173764 83 chain 518011 chr10 135534747 + 96455313 96461377 L1PA4 6152 + 60 6143 5380 624 5 6 184 0 1 2016 0 1 178 1 0 4 0 1 190 0 2 753 6 8 87 0 1 861 4 8 154 0 1 161 1 5 123 0 1 570 3 4 139 chain 161038 chr10 135534747 + 96461769 96463889 L1P3 4156 - 1970 4099 23190 238 0 1 385 0 4 728 12 13 19 0 1 188 1 0 180 0 1 26 9 8 72 6 5 10 18 8 37 6 20 185 chain 4990 chr10 135534747 + 96468903 96468962 L1MB7 1623 + 736 795 195241 59 chain 11347 chr10 135534747 + 96470183 96470325 L1MB7 1623 - 1277 1419 154905 142 chain 6539 chr10 135534747 + 96471487 96471568 MER2 342 - 165 245 180924 66 1 0 14 chain 372754 chr10 135534747 + 96472940 96477287 L1PA5 6144 - 0 4351 11001 350 0 1 270 2 0 41 0 3 182 0 3 1036 3 2 324 3 4 29 4 1 396 2 1 342 0 1 237 0 1 105 3 4 551 0 2 9 2 0 456 chain 37180 chr10 135534747 + 96485958 96486410 L1PA7 6471 - 2 462 73261 201 0 8 251 chain 57687 chr10 135534747 + 96504748 96505483 THE1B-int 1605 + 875 1605 54144 235 18 13 482 chain 140191 chr10 135534747 + 96514610 96516221 L1PA4 6152 - 5 1588 26116 701 13 0 3 15 0 879 chain 152870 chr10 135534747 + 96516221 96518317 L1P2 5180 - 3012 5178 24245 138 0 2 54 0 1 50 0 46 118 0 1 169 0 1 376 0 1 256 0 25 137 1 0 6 1 0 272 1 0 8 1 0 98 41 41 23 0 21 9 22 1 67 1 0 53 18 17 23 17 16 136 chain 58813 chr10 135534747 + 96523542 96524281 LTR12 884 - 12 884 53516 86 9 10 399 2 0 114 0 134 129 chain 459393 chr10 135534747 + 96526961 96532520 HERV9-int 5642 - 44 5517 8426 14 1 0 59 1 0 27 3 1 36 6 4 226 2 0 229 2 0 351 0 1 658 0 3 1528 2 1 51 0 2 218 0 1 1082 2 1 58 85 5 251 6 5 661 chain 27540 chr10 135534747 + 96532539 96532837 AluYb8 318 - 20 318 94534 298 chain 17670 chr10 135534747 + 96532980 96533202 LTR12_ 688 - 0 325 133776 183 3 106 36 chain 168641 chr10 135534747 + 96536401 96539038 L1PA8 5853 + 3687 5853 22204 268 21 21 770 0 1 5 8 7 87 0 8 155 476 0 93 0 3 15 0 1 177 0 2 263 4 0 6 0 3 36 2 0 71 1 0 8 3 1 55 1 0 17 2 1 57 3 2 33 chain 6084 chr10 135534747 + 96546040 96546117 L1MB5 1630 - 1541 1618 184544 77 chain 418600 chr10 135534747 + 96548159 96554240 L1PA7 6471 - 7 6466 9570 5 2 0 127 0 48 201 1 2 236 5 6 45 0 1 178 0 1 405 0 1 255 1 0 4 1 2 322 1 0 46 0 1 25 1 0 279 0 1 155 24 0 117 0 1 51 0 1 461 5 7 237 4 0 6 8 12 327 0 3 212 0 1 42 0 1 66 0 2 50 0 2 66 1 6 899 30 31 105 5 6 19 114 140 132 17 0 29 49 70 144 70 155 50 0 19 81 256 453 109 chain 22119 chr10 135534747 + 96554475 96554748 L1P1 4361 - 33 301 119708 23 1 0 73 1 2 82 1 0 3 4 0 85 chain 463942 chr10 135534747 + 96554770 96560907 L1PA5 6144 - 7 6140 8262 141 1 2 694 0 6 413 0 1 97 4 7 428 0 4 650 31 34 90 0 1 60 2 0 339 2 1 114 5 6 544 0 2 122 0 3 63 1 2 11 17 0 202 6 7 35 6 5 330 0 1 151 5 11 151 22 14 132 0 4 24 1 0 66 13 4 73 9 10 94 59 34 88 0 1 283 1 0 32 0 7 18 1 2 81 36 35 4 0 1 192 5 4 72 12 26 104 chain 3129 chr10 135534747 + 96561979 96562012 LTR12F 595 - 418 451 222381 33 chain 287197 chr10 135534747 + 96569965 96574000 L1P3 4156 - 17 4156 14207 24 2 1 7 2 0 110 8 6 165 1 0 223 7 6 45 3 7 120 1 2 193 0 1 36 0 1 465 25 29 63 1 2 114 0 2 69 0 3 90 2 0 287 0 1 40 0 1 73 1 0 199 1 0 4 10 11 144 0 14 240 13 10 324 0 88 53 39 40 60 2 1 143 44 40 140 55 57 62 5 4 42 36 35 242 chain 186527 chr10 135534747 + 96576336 96578677 L1PA2 6032 - 2 2033 20377 1147 310 0 884 chain 134386 chr10 135534747 + 96578677 96580126 L1PA2 6032 + 2546 3995 27065 1449 chain 544026 chr10 135534747 + 96584417 96590438 L1PA2 6032 - 5 6031 2205 2243 4 1 702 1 0 518 0 1 1271 1 10 1025 1 0 255 chain 54461 chr10 135534747 + 96593453 96594297 L1MA1 4479 - 1617 2458 56059 58 1 0 33 2 0 10 4 0 6 5 9 77 1 0 67 1 0 74 19 19 70 66 67 195 0 3 74 5 0 7 0 3 69 chain 26391 chr10 135534747 + 96594325 96594647 LTR17 781 - 454 779 98445 22 4 5 143 0 1 126 0 1 27 chain 348022 chr10 135534747 + 96594965 96599061 HERV17-int 4347 - 14 4334 11664 557 0 1 13 2 0 424 0 1 196 2 0 766 0 1 712 1 0 160 0 232 98 0 3 331 7 5 235 0 2 71 0 1 30 0 1 133 13 7 210 6 5 25 3 0 6 2 3 24 4 3 50 2 1 13 chain 41067 chr10 135534747 + 96600771 96601291 LTR17 781 - 8 529 67815 358 3 0 5 12 15 67 0 1 75 chain 12876 chr10 135534747 + 96606447 96606586 L1PA3long 6157 - 0 139 148726 139 chain 181914 chr10 135534747 + 96606841 96608912 L1PA4 6152 - 6 2079 20794 764 5 6 746 0 1 556 chain 225647 chr10 135534747 + 96615571 96618415 L1PA6 6164 - 2 6164 17550 145 1 2 22 2 0 6 0 2 341 0 1 506 0 1 82 0 1 111 1 2 15 0 3295 184 2 0 410 2 3 209 0 17 51 0 1 288 8 7 224 1 3 233 chain 167586 chr10 135534747 + 96622841 96625202 L1PB1 5432 - 14 2370 22326 14 1 0 13 1 0 21 1 0 24 2 0 12 10 7 18 10 0 14 4 1 13 1 0 44 1 0 16 2 1 53 32 22 5 0 2 24 7 0 7 1 4 117 0 2 93 0 3 262 3 0 246 10 4 18 0 9 179 1 5 66 8 9 105 5 0 22 0 1 27 0 1 202 2 4 61 0 1 352 0 21 231 chain 159617 chr10 135534747 + 96626726 96628752 L1PA8 5853 - 0 2024 23382 91 4 3 15 1 0 54 5 4 78 2 0 46 1 0 551 2 0 368 0 8 259 6 7 77 3 0 463 chain 16357 chr10 135534747 + 96630099 96630275 AluYa5 310 + 130 306 137319 176 chain 258997 chr10 135534747 + 96635529 96639290 L1PBa 3878 - 106 3797 15753 11 9 4 7 1 0 13 2 0 23 15 14 67 0 2 174 0 1 10 6 0 226 7 4 49 0 1 24 0 1 89 1 2 9 29 0 9 2 0 322 0 3 312 0 4 570 3 2 112 1 0 91 7 0 7 6 14 35 0 9 234 4 5 12 1 0 6 0 1 46 7 12 248 11 7 102 0 9 58 30 34 8 1 0 62 24 15 169 1 0 141 0 7 2 7 0 135 3 1 25 1 0 35 70 31 47 1 0 9 2 0 5 1 0 4 chain 451942 chr10 135534747 + 96652127 96672557 L1PA4 6152 + 12 6143 8700 568 0 1 655 0 1 158 0 5 141 0 1 185 0 1 120 0 1 471 0 1 417 0 1 337 14853 542 2525 chain 302736 chr10 135534747 + 96655182 96658808 L1P1 4361 - 729 4359 13289 455 0 1 161 0 1 1171 0 1 683 1 4 446 14 7 128 1 0 24 0 1 227 23 24 46 0 4 246 chain 186554 chr10 135534747 + 96658822 96660971 L1PA4 6152 + 3892 6037 20374 48 0 1 694 1 0 468 6 0 815 0 1 8 0 1 34 1 2 4 1 0 69 chain 142705 chr10 135534747 + 96668261 96670032 L1PA4 6152 + 10 1785 25672 489 0 1 939 1 4 342 chain 118721 chr10 135534747 + 96672563 96673952 L1PA5 6144 + 4738 6128 31523 713 0 1 676 chain 40534 chr10 135534747 + 96674301 96674776 L1P1 4361 + 248 723 68541 475 chain 4779 chr10 135534747 + 96681018 96681078 L1MA3 4352 - 3431 3490 197580 45 1 0 14 chain 9734 chr10 135534747 + 96688080 96688262 MER84 505 - 259 452 161915 48 15 19 41 28 35 50 chain 80143 chr10 135534747 + 96698920 96699817 MER11D 897 - 0 897 43532 91 0 2 794 2 0 10 chain 81498 chr10 135534747 + 96703198 96704234 MER11B 1079 - 14 1072 42972 15 9 8 269 5 7 241 0 3 156 2 1 13 0 2 16 1 18 309 chain 151345 chr10 135534747 + 96704281 96706284 L1PA8 5853 + 3687 5853 24421 170 1 13 68 0 1 259 0 4 202 0 3 61 0 1 4 0 141 274 1 2 94 0 4 18 7 5 12 0 1 96 0 1 283 12 13 147 2 1 13 0 1 29 2 0 69 18 17 46 2 1 19 2 1 92 chain 173029 chr10 135534747 + 96709181 96711328 L1PA7 6471 + 3537 6458 21705 12 0 4 58 0 1 645 0 1 227 0 2 95 0 3 89 0 4 56 0 74 68 0 2 129 0 1 15 0 682 20 2 1 566 0 1 165 chain 490167 chr10 135534747 + 96714681 96720516 L1PA4 6152 - 0 6146 7356 113 0 1 33 6 7 19 1 3 681 1 0 164 0 1 410 0 14 1092 0 2 408 0 1 38 0 303 17 34 2 147 1 4 646 0 1 880 1 4 116 0 2 133 0 1 659 9 18 226 chain 274355 chr10 135534747 + 96725777 96729651 L1P3 4156 - 20 4156 14957 21 2 1 7 2 0 108 9 8 165 22 20 75 0 4 124 7 6 45 3 7 305 4 0 6 0 5 36 0 1 476 14 18 63 1 2 114 0 2 69 0 3 64 5 4 20 2 0 101 9 170 20 0 1 38 0 1 73 1 0 199 1 0 4 10 11 144 0 14 240 14 10 324 0 88 53 39 40 60 2 1 153 3 0 7 6 0 163 19 20 12 0 2 85 5 4 42 36 35 242 chain 28512 chr10 135534747 + 96761022 96761326 AluYk11 308 + 0 304 91137 304 chain 165964 chr10 135534747 + 96763957 96766409 L1PB1 5432 - 23 2370 22518 5 1 0 12 1 0 22 1 0 24 2 0 14 8 5 30 13 1 18 1 0 41 1 0 16 2 1 53 36 29 24 68 14 47 16 16 177 8 0 45 8 0 4 0 7 95 0 1 82 6 0 242 14 13 358 0 1 30 12 7 19 8 7 246 6 5 122 0 1 84 10 9 225 0 1 5 1 0 189 chain 39814 chr10 135534747 + 96767895 96768455 L1PA8 5853 - 0 724 69604 28 13 14 50 2 1 9 0 1 6 1 0 56 1 0 9 1 0 71 2 0 46 1 0 240 0 169 24 chain 35637 chr10 135534747 + 96774374 96776833 L1P3 4156 - 40 1014 25278 9 2 0 92 9 12 504 1487 0 251 0 1 105 chain 131422 chr10 135534747 + 96775032 96776477 L1PA3long 6157 - 0 1445 27699 1445 chain 474283 chr10 135534747 + 96776909 96783391 L1PA6 6164 - 15 6164 7902 141 14 15 500 2 3 19 4 6 23 330 0 77 0 1 466 6 5 19 0 1 22 9 12 34 5 3 24 0 1 127 1 0 128 2 1 19 0 1 129 0 4 836 1 2 6 5 0 8 1 5 215 0 2 17 0 5 81 0 1 859 1 2 526 18 6 398 9 3 592 0 17 220 1 0 117 22 3 20 41 40 387 chain 14304 chr10 135534747 + 96783414 96784401 L1P3 4156 - 1018 2008 25278 174 0 2 443 10 11 360 chain 16575 chr10 135534747 + 96784401 96784599 L1PA4 6152 + 5952 6143 136723 52 7 0 139 chain 10905 chr10 135534747 + 96791826 96791965 MER75B 242 + 56 195 156573 139 chain 58031 chr10 135534747 + 96812964 96813688 L1PA8 5853 + 5135 5853 53962 473 2 0 71 1 0 8 2 1 52 2 1 19 2 1 92 chain 512858 chr10 135534747 + 96818418 96824333 L1PA5 6144 - 16 5949 5895 243 1 0 92 0 1 442 0 2 53 1 0 699 0 1 726 0 1 102 0 1 24 0 1 535 0 2 1175 0 2 1121 0 10 651 1 0 49 chain 526984 chr10 135534747 + 96838974 96844866 L1PA3long 6157 + 0 6026 4502 153 0 1 397 1 3 187 0 1 39 0 128 2257 1 0 2140 0 1 318 1 2 380 0 1 18 chain 177862 chr10 135534747 + 96849231 96851310 L1PA6 6164 + 4077 6160 21177 1238 0 2 419 3 5 419 chain 67137 chr10 135534747 + 96859364 96860098 L1PA3long 6157 + 5421 6155 49593 734 chain 503824 chr10 135534747 + 96865055 96871177 L1PA6 6164 - 10 6164 6616 458 4 5 229 0 18 122 0 4 315 0 1 65 4 0 876 1 2 707 0 1 161 0 1 6 1 0 15 8 9 602 2 1 204 0 1 17 7 0 59 0 2 178 7 10 367 0 1 31 0 2 83 0 1 153 0 1 190 0 1 56 22 19 87 1 4 234 5 9 163 1 2 114 1 0 139 6 7 421 chain 147909 chr10 135534747 + 96879330 96881498 L1PA10 4194 - 1878 4019 24888 28 0 19 43 3 7 156 10 1 19 1 4 18 0 3 156 6 7 21 0 3 10 6 8 53 2 0 111 0 2 93 0 3 179 0 1 844 0 3 36 2 0 85 1 0 8 7 0 15 1 0 10 1 0 4 35 31 16 51 25 7 1 0 16 2 0 19 64 51 12 2 0 14 chain 21832 chr10 135534747 + 96890498 96890860 THE1B 368 + 2 368 120886 42 8 23 105 7 6 12 6 5 99 1 0 8 4 0 32 4 1 13 5 4 16 chain 27174 chr10 135534747 + 96891694 96892004 L1PA5 6144 - 679 988 95682 171 1 0 138 chain 44954 chr10 135534747 + 96892004 96892540 L1PA5 6144 + 5584 6132 63113 103 0 15 175 5 1 69 0 1 184 chain 287352 chr10 135534747 + 96897859 96901590 L1PA7 6471 + 2501 6469 14197 52 0 1 12 6 5 69 0 1 550 0 6 243 0 4 58 0 1 27 0 3 212 0 1 264 1 4 563 8 9 139 1 0 4 0 1 244 20 19 334 0 6 81 1 2 198 5 8 13 0 19 75 121 296 142 0 1 131 1 17 142 3 0 11 chain 543219 chr10 135534747 + 96907142 96913285 L1PA3long 6157 + 10 6156 2309 568 0 4 114 0 7 16 7 0 110 0 1 2425 9 8 2889 1 0 4 chain 289986 chr10 135534747 + 96913471 96916792 L1PA4 6152 + 2825 6141 14018 430 14 7 2044 0 3 81 1 0 402 2 0 39 0 1 206 0 1 102 chain 216878 chr10 135534747 + 96916844 96919676 L1PA6 6164 + 3316 6151 18062 247 11 0 8 0 10 127 13 11 131 10 2 64 0 1 298 0 2 259 14 1 209 7 4 43 7 11 120 0 17 19 1 0 134 1 2 354 1 3 288 1 4 6 0 1 310 0 5 7 12 7 130 chain 98683 chr10 135534747 + 96921879 96923150 L1P1 4361 - 20 1297 37103 12 2 1 23 1 0 29 14 23 27 0 1 77 1 0 472 2 1 70 0 1 433 1 0 107 chain 143793 chr10 135534747 + 96923608 96925315 L1PA5 6144 + 4437 6134 25517 184 3 1 132 4 0 10 22 0 527 0 4 25 0 5 411 0 2 251 0 7 138 chain 7195 chr10 135534747 + 96925355 96925435 MER9a3 513 + 357 437 176107 80 chain 187160 chr10 135534747 + 96925448 96927708 L1PA7 6471 + 4185 6469 20323 477 0 10 176 0 4 243 0 6 513 0 3 466 0 4 367 3 0 15 chain 203282 chr10 135534747 + 96933012 96935321 L1PA4 6152 - 0 2318 18976 10 0 6 119 4 0 15 0 1 362 0 1 766 0 1 78 0 4 122 3 4 660 2 1 168 chain 9772 chr10 135534747 + 96936751 96936861 L1PA4 6152 + 6033 6143 161732 110 chain 11859 chr10 135534747 + 96936910 96937175 L1PB1 5432 + 5182 5423 152794 38 2 1 14 2 1 45 4 3 12 53 40 10 2 0 24 1 0 22 1 0 12 1 0 14 3 0 5 chain 91098 chr10 135534747 + 96956950 96957979 LTR5A 1029 - 0 1029 39263 294 0 1 584 1 0 150 chain 14621 chr10 135534747 + 96958621 96958786 L1PA4 6152 + 4501 4666 142520 165 chain 131689 chr10 135534747 + 96958786 96960244 L1PA4 6152 + 4668 6131 27702 1070 0 5 388 chain 10871 chr10 135534747 + 96967915 96968066 L1PB4 2604 + 2422 2572 156694 128 7 6 16 chain 8664 chr10 135534747 + 96975990 96976093 MLT1A 405 - 242 345 167403 103 chain 28817 chr10 135534747 + 96988897 96989287 LTR7 482 + 0 473 89812 69 8 46 109 0 1 19 3 34 27 0 3 6 0 10 149 chain 40828 chr10 135534747 + 96990949 96991400 LTR7 482 + 0 482 68131 266 0 31 185 chain 3375 chr10 135534747 + 97013532 97013568 L1MDa 1598 + 1404 1440 217574 36 chain 4930 chr10 135534747 + 97090167 97090229 HY1 111 - 37 99 195928 62 chain 3779 chr10 135534747 + 97091447 97091519 MER84 505 + 0 74 210669 13 0 1 10 0 12 6 10 0 8 1 0 24 chain 2824 chr10 135534747 + 97095389 97095421 MIRb 242 - 110 142 228312 32 chain 8887 chr10 135534747 + 97237511 97237625 MER30 238 - 0 111 166201 48 3 0 63 chain 4093 chr10 135534747 + 97251234 97251415 MER102c 337 + 108 273 206044 32 7 0 6 108 99 28 chain 3484 chr10 135534747 + 97252271 97252311 tRNA-Cys-TGY 72 - 32 72 215621 40 chain 21356 chr10 135534747 + 97306030 97306408 MSTA 426 - 0 369 122662 159 28 17 40 3 0 6 35 38 62 11 12 25 0 1 9 chain 7165 chr10 135534747 + 97330165 97330253 L1MB7 1623 - 446 534 176302 88 chain 25785 chr10 135534747 + 97336699 97336994 AluY 311 + 11 306 100934 295 chain 18614 chr10 135534747 + 97362122 97362496 MLT1A 405 - 7 365 131176 64 5 8 61 1 0 15 13 8 22 85 72 91 1 0 5 0 1 11 chain 159617 chr10 135534747 + 97378852 97380689 L1PA6 6164 + 4306 6147 23381 62 0 4 276 0 1 581 0 1 81 0 4 189 0 2 365 19 11 264 chain 4298 chr10 135534747 + 97402040 97402114 MER58A 224 + 140 215 203253 22 11 12 41 chain 3828 chr10 135534747 + 97408942 97408987 L1MD1 2063 + 1303 1348 209958 45 chain 23518 chr10 135534747 + 97422513 97422806 AluSq2 311 - 15 311 113031 142 0 3 7 3 0 15 0 1 63 0 2 63 chain 28931 chr10 135534747 + 97429538 97429841 AluYf4 310 + 0 303 89326 303 chain 29077 chr10 135534747 + 97439341 97439646 AluYa8 305 - 0 305 88659 305 chain 13825 chr10 135534747 + 97452412 97452625 MER30 238 + 0 223 145161 51 1 0 16 3 0 27 0 1 13 2 0 9 7 16 28 0 6 56 chain 2808 chr10 135534747 + 97466233 97466445 MER52C 1267 - 361 431 228641 19 2 1 19 157 16 15 chain 24521 chr10 135534747 + 97467960 97468254 AluSc5 308 - 0 294 107435 294 chain 6998 chr10 135534747 + 97471557 97471659 MER39B 650 + 548 650 177479 41 2 0 5 1 2 41 0 1 12 chain 24356 chr10 135534747 + 97477115 97477443 LTR17 781 - 455 781 108343 133 18 17 115 1 0 61 chain 324670 chr10 135534747 + 97477917 97481713 HERV17-int 4347 - 117 4334 12408 12 1 0 203 2 0 115 2 0 1824 0 1 98 0 1 504 1 2 79 2 1 43 4 3 579 0 430 64 8 7 151 2 0 35 2 1 50 1 0 14 chain 23986 chr10 135534747 + 97482151 97482425 L1PA3long 6157 + 5745 6012 110410 258 7 0 9 chain 23086 chr10 135534747 + 97483645 97483943 AluY 311 + 9 307 115212 129 18 18 151 chain 39177 chr10 135534747 + 97484119 97484627 LTR17 781 - 0 526 70493 11 6 0 32 5 8 11 1 23 369 1 0 72 chain 84730 chr10 135534747 + 97492396 97493446 MER11B 1079 - 22 1079 41626 26 0 1 82 2 1 173 2 4 102 1 0 348 0 1 94 0 5 220 chain 23328 chr10 135534747 + 97512144 97512431 AluSp 311 + 15 291 114041 75 3 0 143 8 0 58 chain 326283 chr10 135534747 + 97534069 97538034 L1P2 5180 - 6 5178 12333 38 1 0 49 1 0 730 0 4 248 2 0 225 0 1191 17 0 1 406 7 6 49 1 3 497 0 6 396 1 6 290 1 0 219 1 0 6 1 0 224 1 0 32 15 0 7 0 14 98 4 15 47 38 38 65 1 0 53 1 0 44 1 0 148 chain 13140 chr10 135534747 + 97540638 97540836 L1MA2 4263 + 3879 4072 147679 77 11 9 69 0 4 20 7 0 14 chain 72848 chr10 135534747 + 97559869 97560934 MER11A 1151 - 0 1151 47100 66 1 0 87 5 4 101 1 0 5 48 109 32 0 4 29 11 12 11 6 9 138 0 12 238 8 5 55 0 4 30 14 13 100 0 8 79 chain 20743 chr10 135534747 + 97561425 97561755 L1PA13 3608 - 86 396 124810 4 1 0 16 6 1 10 7 4 18 2 1 17 11 7 48 2 0 8 1 0 52 1 0 63 2 0 61 chain 29811 chr10 135534747 + 97561761 97562143 MER4E 760 - 39 422 85402 39 0 4 246 1 0 71 2 0 23 chain 411273 chr10 135534747 + 97562235 97567400 L1PA6 6164 - 18 6164 9770 370 0 5 113 272 14 40 5 8 280 0 4 133 5 7 527 1 0 72 1 18 86 0 1 283 0 8 289 0 1192 362 0 1 62 13 12 996 10 16 492 2 1 5 0 1 181 1 0 47 0 2 272 0 1 245 chain 18463 chr10 135534747 + 97562721 97562979 L1PREC2 3366 - 543 798 131605 13 10 9 44 7 5 184 chain 64522 chr10 135534747 + 97568477 97569411 SVA_B 1603 - 0 830 50788 14 9 7 553 111 0 39 0 3 37 12 17 22 17 19 41 1 0 78 chain 3176 chr10 135534747 + 97569482 97569923 SVA_F 1814 - 1195 1293 221414 19 358 12 27 22 25 15 chain 3092 chr10 135534747 + 97569961 97570016 SVA_F 1814 - 525 1076 223069 29 2 498 24 chain 2902 chr10 135534747 + 97584820 97584854 MER3 215 + 48 82 227000 34 chain 423983 chr10 135534747 + 97611188 97615944 L1PA5 6144 - 0 4753 9447 3508 4 0 372 1 2 871 chain 37114 chr10 135534747 + 97615947 97616501 L1PB1 5432 + 4662 5156 73358 43 0 2 68 2 0 328 5 2 8 55 0 25 1 0 8 1 0 10 chain 26133 chr10 135534747 + 97633457 97633806 THE1A 353 - 0 353 99469 58 0 1 49 4 5 38 1 0 63 0 4 25 1 0 110 chain 120634 chr10 135534747 + 97633811 97635381 THE1A-int 1579 - 6 1571 30827 8 1 0 14 2 1 134 0 6 31 1 0 323 29 8 61 2 3 479 5 3 46 2 4 12 1 0 283 1 3 57 12 23 66 chain 27064 chr10 135534747 + 97635381 97635723 THE1A 353 - 2 353 96061 153 1 0 88 2 1 33 0 11 65 chain 34187 chr10 135534747 + 97642237 97642607 L1PA3long 6157 + 5787 6157 77369 370 chain 34271 chr10 135534747 + 97652149 97652594 MER4A1 472 - 0 472 77250 118 0 4 51 0 1 51 1 22 160 7 8 57 chain 115225 chr10 135534747 + 97653001 97654702 L1PB1 5432 + 3820 5430 32706 95 0 1 137 7 12 377 1 7 53 33 10 86 1 2 28 3 0 176 2 3 6 1 0 124 0 1 111 9 0 54 49 13 20 1 0 10 1 0 10 7 3 9 2 0 52 2 1 15 1 0 45 1 0 15 1 0 4 20 8 13 3 1 10 1 0 14 2 0 24 1 0 20 18 16 16 1 0 4 1 0 4 chain 21915 chr10 135534747 + 97660899 97661189 L1PA7 6471 + 6182 6469 120565 138 5 6 126 2 0 7 2 0 10 chain 18479 chr10 135534747 + 97666159 97666366 L1PA5 6144 + 5922 6130 131559 74 0 1 133 chain 81836 chr10 135534747 + 97672618 97673956 L1MA3 4352 - 35 1351 42827 29 1 0 6 1 0 24 10 8 13 7 1 26 133 120 157 3 0 5 8 11 18 2 0 22 4 0 207 0 1 61 1 0 6 13 14 44 4 5 243 11 16 68 1 0 77 0 1 133 chain 23411 chr10 135534747 + 97679944 97680299 THE1D 372 - 5 361 113594 27 16 15 133 28 30 151 chain 16834 chr10 135534747 + 97681504 97681704 L1PA6 6164 + 5955 6156 136030 124 0 1 76 chain 531080 chr10 135534747 + 97688177 97694604 L1PA7 6471 - 11 6471 4072 80 1 0 34 0 1 24 0 1 189 5 7 245 5 11 158 1 0 86 0 4 54 0 1 484 0 1 765 0 9 177 0 1 11 0 1 563 0 4 449 0 4 308 17 15 36 4 5 99 0 1 1411 8 12 154 1 2 206 0 1 17 0 1 179 1 0 34 1 2 170 13 4 36 59 36 11 1 2 77 1 25 252 chain 24838 chr10 135534747 + 97699671 97700113 MSTA 426 - 0 426 105681 138 21 0 14 70 69 46 16 22 137 chain 3226 chr10 135534747 + 97707171 97707207 MER41B 635 + 511 547 220497 36 chain 144489 chr10 135534747 + 97707886 97709425 L1HS 6032 + 4491 6030 25400 1539 chain 4617 chr10 135534747 + 97717139 97717206 L1M4c 1769 + 58 123 199429 23 1 0 27 1 0 15 chain 87686 chr10 135534747 + 97745059 97746096 MER11B 1079 + 0 1057 40497 316 1 18 231 1 0 4 0 1 200 2 4 259 0 1 23 chain 80928 chr10 135534747 + 97753760 97754715 LTR13A 966 - 6 966 43228 186 0 1 39 0 1 356 0 1 192 0 1 54 0 1 128 chain 4127 chr10 135534747 + 97774111 97774186 MER53 195 - 118 195 205550 46 16 18 13 chain 90319 chr10 135534747 + 97787288 97788815 L1MA2 4263 + 2803 4218 39529 105 1 2 65 3 0 84 0 6 52 0 1 117 17 18 13 20 21 189 0 11 77 0 1 19 9 4 74 1 0 40 7 8 84 15 12 150 11 9 93 9 2 10 1 2 33 1 0 9 183 71 19 4 2 12 chain 22940 chr10 135534747 + 97795978 97796263 AluSc5 308 - 14 298 115908 163 1 0 121 chain 12660 chr10 135534747 + 97797170 97797343 L1PA16 3655 - 67 243 149606 10 3 0 57 0 4 6 0 2 97 chain 42128 chr10 135534747 + 97867055 97867678 MER41B 635 - 8 635 66472 88 0 1 22 4 5 29 26 26 286 1 2 14 27 28 126 chain 8438 chr10 135534747 + 97872505 97872608 U6 107 + 2 107 168632 28 1 0 17 0 3 57 chain 497425 chr10 135534747 + 97940103 97946104 L1PA5 6144 - 1 6141 6986 12 1 0 175 0 1 1057 0 4 108 0 4 150 4 5 275 0 8 256 2 0 156 0 1 62 0 5 179 1 5 241 0 1 183 1 6 57 0 3 671 0 1 182 0 2 11 0 10 950 1 2 190 13 5 67 5 0 144 25 0 16 0 1 8 1 2 92 0 17 114 8 99 391 1 0 71 12 32 108 chain 28482 chr10 135534747 + 97954524 97954824 AluYg6 310 - 10 310 91258 300 chain 4011 chr10 135534747 + 98010806 98010857 L1MA4 2864 - 66 115 207219 31 2 0 18 chain 14916 chr10 135534747 + 98030191 98030381 L1PA7 6471 + 6279 6470 141585 29 2 4 140 1 0 18 chain 29507 chr10 135534747 + 98068356 98068776 LTR7B 505 - 10 505 86608 41 14 13 76 1 0 54 2 1 30 0 2 26 19 85 52 0 10 105 chain 4844 chr10 135534747 + 98082553 98082706 MLT1A 405 - 0 185 196848 35 9 10 26 1 0 14 53 85 15 chain 10508 chr10 135534747 + 98110311 98110426 L1PA5 6144 + 6023 6138 158215 115 chain 12085 chr10 135534747 + 98124771 98124969 MER30 238 - 0 238 151857 79 0 6 13 0 29 13 22 8 6 0 1 47 2 20 16 chain 17341 chr10 135534747 + 98143065 98143360 THE1B 368 + 0 303 134678 105 11 12 59 0 2 6 34 30 10 7 16 63 chain 88839 chr10 135534747 + 98163023 98164025 LTR5A 1029 + 0 1029 40066 150 1 0 169 0 19 27 0 9 655 chain 42758 chr10 135534747 + 98215121 98215671 MER41A 554 + 0 554 65712 396 3 2 70 13 18 68 chain 3708 chr10 135534747 + 98222197 98222241 MLT1A0 366 - 59 103 211837 44 chain 3426 chr10 135534747 + 98260158 98260197 L1ME4a 557 + 254 293 216647 39 chain 9644 chr10 135534747 + 98296718 98296862 Tigger2b_Pri 1066 + 826 990 162383 75 0 5 11 10 26 23 1 0 24 chain 115149 chr10 135534747 + 98333462 98334838 L1PA7 6471 + 5090 6470 32736 312 0 2 216 2 1 207 0 1 627 0 2 12 chain 42298 chr10 135534747 + 98350964 98351505 LTR66 600 + 14 600 66268 306 7 9 74 4 0 25 0 1 28 0 1 9 0 35 15 0 4 44 7 13 22 chain 29470 chr10 135534747 + 98363052 98363421 MLT2A1 477 + 0 373 86755 169 1 5 123 1 0 13 0 1 62 chain 22979 chr10 135534747 + 98371238 98371511 AluSc 308 - 22 297 115720 261 0 2 12 chain 6399 chr10 135534747 + 98377987 98378057 L1PA6 6164 + 6083 6153 182031 70 chain 3412 chr10 135534747 + 98383970 98384010 MIR 256 + 175 215 216895 40 chain 25008 chr10 135534747 + 98415308 98415679 THE1B 368 + 0 368 104745 63 13 19 21 2 0 69 1 0 20 4 0 32 10 9 60 1 0 75 chain 29492 chr10 135534747 + 98422356 98422674 AluYb8 318 + 1 317 86662 131 2 0 185 chain 25325 chr10 135534747 + 98449039 98449356 AluY 311 + 0 306 103090 126 5 0 143 7 1 36 chain 3111 chr10 135534747 + 98452479 98452515 tRNA-Cys-TGY 72 + 1 37 222743 36 chain 4652 chr10 135534747 + 98464141 98464192 MER5A1 166 + 24 75 199048 51 chain 44246 chr10 135534747 + 98490460 98491001 MER41A 554 + 13 554 63886 285 4 0 41 0 1 85 0 2 70 0 1 56 chain 25462 chr10 135534747 + 98492761 98493168 LTR7Y 441 + 0 441 102400 103 9 0 57 68 84 68 11 38 91 chain 192875 chr10 135534747 + 98493174 98495396 HERVH-int 3825 + 742 2997 19779 14 0 1 6 0 2 14 0 3 350 0 3 88 15 0 158 0 10 61 0 2 227 8 35 1281 chain 29075 chr10 135534747 + 98495941 98496375 LTR7Y 441 + 0 441 88663 96 18 9 55 68 84 197 chain 16783 chr10 135534747 + 98496820 98497634 L1MC2 1988 - 69 560 136153 34 32 0 9 2 30 28 26 27 49 447 108 12 6 20 92 17 18 39 0 4 21 chain 7715 chr10 135534747 + 98502933 98503027 U6 107 + 10 104 172826 94 chain 28025 chr10 135534747 + 98511330 98511627 AluYd8 298 - 1 298 92914 297 chain 61809 chr10 135534747 + 98519358 98520140 L1PA8 5853 + 5072 5847 51992 83 0 1 408 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 2 1 68 1 0 18 chain 3794 chr10 135534747 + 98536976 98537143 L1PB1 5432 + 5114 5271 143045 20 1 0 13 1 0 11 5 1 9 6 4 48 2 1 10 6 5 35 chain 28159 chr10 135534747 + 98537156 98537457 AluYa5 310 + 0 300 92430 126 1 0 174 chain 2522 chr10 135534747 + 98537501 98537612 L1PB1 5432 + 5308 5411 143045 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 7 chain 3370 chr10 135534747 + 98542500 98542538 MER58D 378 - 35 73 217689 38 chain 28185 chr10 135534747 + 98546825 98547162 LTR14A 344 + 5 344 92359 260 4 6 73 chain 28155 chr10 135534747 + 98560155 98560531 MER4B 649 + 0 413 92443 21 6 5 168 0 23 124 0 15 57 chain 37191 chr10 135534747 + 98576568 98577380 MER41A 554 + 18 522 73247 69 6 8 85 6 9 189 314 0 115 0 1 28 chain 25600 chr10 135534747 + 98577443 98577738 AluYc3 301 - 7 301 101731 114 0 3 63 4 0 114 chain 27415 chr10 135534747 + 98579639 98579931 AluYb8 318 + 1 318 94922 68 0 25 224 chain 25562 chr10 135534747 + 98583434 98583740 AluSp 311 + 0 300 101923 128 6 0 172 chain 27603 chr10 135534747 + 98605213 98605523 AluYf4 310 - 0 310 94339 310 chain 12597 chr10 135534747 + 98624467 98624645 Tigger3a 397 + 139 333 149855 90 0 2 11 9 23 68 chain 25188 chr10 135534747 + 98647042 98647333 AluY 311 + 0 296 103805 89 0 4 39 0 1 163 chain 170294 chr10 135534747 + 98700072 98702189 SVA_E 1901 - 0 1901 22016 623 0 49 7 0 1 89 40 0 37 1 0 172 178 0 87 1 0 19 41 0 493 3 0 179 2 0 145 chain 3360 chr10 135534747 + 98700791 98700831 SVA_E 1901 - 895 944 97864 27 4 13 9 chain 3929 chr10 135534747 + 98701041 98701083 SVA_E 1901 - 929 971 153508 42 chain 5802 chr10 135534747 + 98701083 98701173 SVA_E 1901 - 669 760 148170 10 0 1 80 chain 2264 chr10 135534747 + 98701173 98701218 SVA_E 1901 - 761 806 81824 45 chain 1206 chr10 135534747 + 98701327 98701367 SVA_E 1901 - 1084 1124 154579 40 chain 9574 chr10 135534747 + 98813918 98814204 MSTB 430 + 101 398 162721 24 0 2 8 5 3 22 92 100 54 34 37 47 chain 3529 chr10 135534747 + 98838840 98838877 MIRb 242 + 69 106 214889 37 chain 4681 chr10 135534747 + 98897796 98897859 MER8 282 + 0 64 198745 50 1 2 12 chain 24875 chr10 135534747 + 98927412 98927777 THE1C 375 + 0 373 105487 103 14 13 24 5 6 23 17 26 154 1 0 24 chain 3489 chr10 135534747 + 98943260 98943298 MIRb 242 - 137 175 215527 38 chain 8234 chr10 135534747 + 99004656 99004753 MER50B 698 - 130 227 169760 97 chain 9451 chr10 135534747 + 99012431 99012563 L1MA4A 3247 + 2956 3085 163309 13 4 1 115 chain 4019 chr10 135534747 + 99013552 99013606 Tigger7 736 + 430 483 207097 48 1 0 5 chain 20509 chr10 135534747 + 99028219 99028584 THE1B 368 - 0 368 125602 64 2 0 62 1 0 4 82 87 85 0 1 65 chain 134054 chr10 135534747 + 99034870 99037371 SVA_F 1814 + 342 1812 27191 546 1 0 43 0 1 15 1 15 128 276 0 180 769 0 542 chain 2329 chr10 135534747 + 99035604 99035630 SVA_F 1814 + 1266 1291 143445 8 1 0 17 chain 12898 chr10 135534747 + 99035654 99035786 SVA_F 1814 + 1090 1222 148640 132 chain 547 chr10 135534747 + 99035786 99035837 SVA_F 1814 + 374 584 160875 17 7 166 27 chain 17542 chr10 135534747 + 99036060 99036254 SVA_F 1814 + 1094 1291 77486 65 0 4 111 1 0 17 chain 11222 chr10 135534747 + 99036276 99036405 SVA_F 1814 + 1089 1219 155339 125 0 1 4 chain 4856 chr10 135534747 + 99036418 99036473 SVA_F 1814 + 893 947 196720 44 1 0 10 chain 2175 chr10 135534747 + 99036486 99036509 SVA_F 1814 + 1023 1046 183235 23 chain 2648 chr10 135534747 + 99036524 99036552 SVA_F 1814 + 1061 1089 183235 28 chain 4616 chr10 135534747 + 99036552 99036603 SVA_F 1814 + 1138 1187 150980 32 2 0 17 chain 7190 chr10 135534747 + 99036604 99036828 SVA_F 1814 + 1011 1232 86925 159 1 0 11 2 0 51 chain 43226 chr10 135534747 + 99049848 99050400 LTR17 781 + 255 781 65138 44 10 0 28 0 1 92 18 0 353 0 1 7 chain 26576 chr10 135534747 + 99050696 99051021 LTR17 781 + 0 324 97738 119 0 9 182 10 0 14 chain 19247 chr10 135534747 + 99061449 99061716 AluSq 315 + 52 315 129385 81 1 2 101 11 6 73 chain 25471 chr10 135534747 + 99095458 99095747 AluSx1 309 + 10 299 102351 289 chain 39764 chr10 135534747 + 99098671 99099113 LTR7Y 441 + 7 441 69670 151 8 0 283 chain 21284 chr10 135534747 + 99106632 99106916 AluSc 308 - 21 307 122917 81 1 2 53 0 3 6 10 7 29 0 1 104 chain 29568 chr10 135534747 + 99108296 99108606 AluYf4 310 - 0 310 86351 310 chain 24165 chr10 135534747 + 99110851 99111145 AluSq 315 + 10 302 109399 43 2 0 81 0 1 28 1 0 139 chain 3137 chr10 135534747 + 99132170 99132243 MIR 256 - 111 183 222226 7 3 0 18 18 20 27 chain 7930 chr10 135534747 + 99137977 99138157 Tigger3a 397 - 0 188 171445 16 53 60 30 8 9 73 chain 3689 chr10 135534747 + 99149797 99149837 MIRb 242 - 131 171 212097 40 chain 3922 chr10 135534747 + 99152027 99152076 L1MB2 1706 - 46 95 208524 49 chain 6640 chr10 135534747 + 99156826 99156905 MER2 342 - 127 206 180162 79 chain 29841 chr10 135534747 + 99157797 99158110 AluYb8 318 - 5 318 85312 313 chain 23241 chr10 135534747 + 99168001 99168298 AluSp 311 - 6 299 114487 19 3 0 106 7 6 162 chain 78622 chr10 135534747 + 99176602 99177875 LTR5_Hs 974 - 0 974 44214 51 0 8 44 2 0 37 5 12 90 0 3 163 0 4 276 0 1 1 320 0 284 chain 9626 chr10 135534747 + 99180953 99181064 HY1 111 - 0 111 162463 111 chain 24432 chr10 135534747 + 99183445 99183732 AluSp 311 + 10 297 107901 287 chain 29337 chr10 135534747 + 99199085 99199532 MER1A 529 + 70 529 87362 14 4 13 22 16 15 34 7 7 266 20 24 64 chain 21858 chr10 135534747 + 99206478 99206754 AluSc 308 - 11 297 120788 20 0 3 114 1 0 89 0 8 52 chain 22225 chr10 135534747 + 99209295 99209586 AluSz 310 - 20 310 119234 162 9 8 120 chain 29759 chr10 135534747 + 99209615 99209927 AluYb8 318 - 6 318 85612 312 chain 10159 chr10 135534747 + 99238835 99239024 LTR9B 643 + 460 643 159809 13 1 0 24 4 11 17 11 1 62 17 15 40 chain 32023 chr10 135534747 + 99239604 99240124 LTR9B 643 + 16 561 80831 56 0 2 29 0 8 25 1 2 63 27 32 177 44 42 22 1 5 30 1 8 44 chain 172534 chr10 135534747 + 99287232 99289549 SVA_D 2077 - 0 2074 21756 77 0 2 48 0 1 6 0 20 285 0 4 233 9 8 4 0 1 143 97 0 155 96 0 52 0 1 51 1 0 39 11 0 30 128 1 25 0 40 134 0 1 507 2 1 20 0 20 143 5 6 16 chain 7027 chr10 135534747 + 99288037 99288134 SVA_D 2077 - 959 1059 83431 30 1 2 48 0 2 18 chain 1884 chr10 135534747 + 99288289 99288315 SVA_D 2077 - 1172 1197 83431 3 1 0 22 chain 5725 chr10 135534747 + 99288315 99288385 SVA_D 2077 - 613 683 141923 70 chain 8572 chr10 135534747 + 99288569 99288692 SVA_D 2077 - 768 892 129225 95 0 1 28 chain 21800 chr10 135534747 + 99304231 99304779 Tigger2a 444 - 0 444 121020 18 63 65 149 140 0 57 22 25 22 3 6 25 0 3 19 4 29 26 chain 34748 chr10 135534747 + 99315220 99315692 LTR2B 499 - 0 490 76548 180 1 0 10 0 1 14 0 2 28 0 5 11 6 1 102 0 1 14 0 19 37 3 0 60 1 0 5 chain 57336 chr10 135534747 + 99319230 99319979 Harlequin-int 5206 - 4319 5071 54318 402 3 0 115 9 13 48 0 3 17 0 1 65 4 1 59 0 2 14 1 0 12 chain 37547 chr10 135534747 + 99321082 99321564 LTR2B 499 - 0 499 72760 182 1 0 8 0 1 179 0 19 36 3 0 60 0 1 13 chain 39573 chr10 135534747 + 99322054 99322605 LTR7B 505 - 0 505 69931 248 2 1 7 0 22 35 70 0 32 0 4 50 1 0 106 chain 8708 chr10 135534747 + 99324088 99324314 MER4D1 891 + 325 546 167154 43 20 18 52 76 73 35 chain 5106 chr10 135534747 + 99368185 99368279 MER96B 391 - 212 311 194025 19 18 24 30 1 0 26 chain 23658 chr10 135534747 + 99377344 99377644 AluSc 308 + 5 295 112263 47 0 3 230 13 0 10 chain 7172 chr10 135534747 + 99399673 99399782 LTR23 429 + 180 295 176256 35 7 9 48 0 4 19 chain 25278 chr10 135534747 + 99405087 99405384 AluY 311 + 4 302 103325 122 0 1 175 chain 29169 chr10 135534747 + 99441353 99441671 AluYb8 318 + 0 318 88203 31 0 1 91 1 0 195 chain 6571 chr10 135534747 + 99449927 99450016 MER96B 391 - 70 157 180692 27 2 0 60 chain 91015 chr10 135534747 + 99459576 99460603 LTR5A 1029 + 0 1029 39285 17 0 4 59 1 0 67 1 0 882 chain 2820 chr10 135534747 + 99462976 99463006 MER57A1 433 - 403 433 228474 30 chain 3856 chr10 135534747 + 99470760 99470872 MIR 256 - 121 230 209494 33 51 48 28 chain 53227 chr10 135534747 + 99500903 99501530 L1PA7 6471 + 5844 6470 56874 280 2 0 196 0 1 149 chain 20023 chr10 135534747 + 99535881 99536151 Charlie1a 1436 + 972 1239 127075 164 1 2 71 4 0 30 chain 3784 chr10 135534747 + 99543854 99543894 MIRc 230 - 100 140 210600 40 chain 5663 chr10 135534747 + 99553933 99554002 MLT1E 632 - 383 452 188448 69 chain 127237 chr10 135534747 + 99600726 99602214 SVA_D 2077 + 6 2071 28758 30 11 0 9 1 0 606 0 2 9 27 101 113 1 6 34 1 490 39 1 0 478 0 20 128 chain 2366 chr10 135534747 + 99601392 99601419 SVA_D 2077 + 776 803 139309 27 chain 35152 chr10 135534747 + 99603574 99603968 L1PA3long 6157 - 0 394 75991 394 chain 23860 chr10 135534747 + 99708467 99708832 THE1C 375 - 0 375 111128 169 23 21 75 5 3 24 10 24 59 chain 23268 chr10 135534747 + 99711848 99712117 AluY 311 + 21 291 114347 111 0 1 158 chain 13528 chr10 135534747 + 99749109 99749355 Tigger3a 397 - 64 344 146253 38 33 8 125 1 11 12 16 65 21 chain 110594 chr10 135534747 + 99755779 99756987 L1PA3long 6157 + 4935 6142 34053 882 2 1 324 chain 5860 chr10 135534747 + 99780170 99780238 MIR 256 - 120 188 186583 68 chain 2441 chr10 135534747 + 99841430 99841473 MIRb 242 - 133 175 233865 12 7 6 24 chain 34633 chr10 135534747 + 99845137 99845775 L1PB1 5432 - 33 647 76712 8 1 0 20 2 1 24 24 19 13 25 14 4 1 0 15 3 2 42 1 0 12 6 5 50 3 1 10 27 21 24 1 0 5 7 6 51 1 0 5 0 1 231 3 11 19 chain 129603 chr10 135534747 + 99877499 99879636 L1PB1 5432 - 10 1898 28178 18 1 0 12 1 0 22 1 0 20 70 54 15 1 0 8 0 7 24 10 5 16 2 1 45 9 7 9 2 0 3 2 0 12 1 0 6 1 0 25 1 0 11 276 6 100 3 6 51 6 29 106 7 14 164 1 0 21 10 19 108 6 11 78 0 1 181 0 2 184 0 1 34 1 0 402 0 1 4 1 0 45 chain 111270 chr10 135534747 + 99883939 99885438 THE1B-int 1605 - 10 1587 33872 620 2 0 258 31 29 51 9 7 58 5 17 90 0 64 99 0 1 27 24 25 164 1 7 60 chain 12359 chr10 135534747 + 99892527 99892760 LTR8A 794 - 30 292 150802 29 64 92 132 0 1 8 chain 38041 chr10 135534747 + 99892824 99893300 LTR2B 499 + 0 499 72073 13 0 1 57 2 0 124 0 14 32 2 12 246 chain 142654 chr10 135534747 + 99911664 99913385 SVA_C 1631 + 12 1630 25704 9 1 0 33 23 0 463 77 0 338 14 15 8 0 1 31 1 0 40 1 0 476 1 0 185 1 0 19 chain 6155 chr10 135534747 + 99920032 99920276 MER33 330 + 11 319 183934 24 133 171 29 0 17 42 1 10 15 chain 502170 chr10 135534747 + 99936797 99942930 L1PA6 6164 - 7 6164 6715 140 15 15 688 24 0 180 18 9 275 0 1 206 1 0 141 0 2 279 1 2 888 1 0 55 0 7 79 0 1 4 1 2 278 9 7 215 4 0 134 0 3 17 0 9 161 0 2 23 0 1 272 0 19 144 0 10 94 0 3 47 0 1 176 1 2 129 8 13 154 6 8 13 1 0 307 6 0 34 0 4 215 2 1 102 0 1 72 4 3 162 32 32 315 chain 101633 chr10 135534747 + 99950415 99951597 L1PA6 6164 - 2 1187 36361 832 0 1 141 0 1 78 0 1 131 chain 3408 chr10 135534747 + 99953323 99953361 L1MB2 1706 + 40 78 216944 38 chain 212565 chr10 135534747 + 99980143 99982474 L1PA2 6032 - 2 2341 18323 139 0 7 980 0 1 1212 chain 59403 chr10 135534747 + 99982474 99983130 L1PA2 6032 + 3044 3700 53176 656 chain 276285 chr10 135534747 + 99987340 99990495 L1PA5 6144 - 0 3163 14856 536 1 0 309 0 1 37 19 18 621 1 0 269 0 4 66 0 1 1003 0 1 26 9 14 68 1 0 189 chain 32088 chr10 135534747 + 100039200 100039839 L1PB1 5432 + 4857 5420 80714 246 61 11 13 21 19 12 5 1 10 3 1 13 0 7 30 2 1 15 1 0 14 1 0 27 8 7 12 3 0 6 19 9 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 5061 chr10 135534747 + 100040357 100040421 L1MDa 1598 + 421 485 194521 64 chain 17594 chr10 135534747 + 100094235 100094462 MER30 238 + 0 238 134014 111 10 21 106 chain 63061 chr10 135534747 + 100107929 100108684 LTR17 781 + 0 773 51424 299 10 0 28 0 1 6 0 5 377 0 22 35 chain 44370 chr10 135534747 + 100122146 100123070 PABL_A 660 + 25 660 63733 59 0 9 133 0 45 30 1 3 57 323 0 195 0 6 16 31 3 79 chain 8940 chr10 135534747 + 100146145 100146287 MER33 330 - 109 268 165923 96 17 34 29 chain 57901 chr10 135534747 + 100235609 100236238 L1PA3long 6157 + 5526 6157 54036 487 0 2 142 chain 25845 chr10 135534747 + 100251986 100252288 AluY 311 + 9 309 100672 123 0 1 155 3 0 21 chain 50977 chr10 135534747 + 100253848 100254437 LTR10C 591 - 0 591 58325 81 0 2 508 chain 411648 chr10 135534747 + 100258029 100263759 L1PB1 5432 + 77 5424 9757 54 0 2 179 11 7 1076 1 0 7 15 0 194 0 6 305 2 0 587 2 0 85 22 0 98 2 1 62 0 3 99 16 13 31 0 3 119 1 0 74 4 0 53 1 9 6 8 0 134 1 0 57 0 1 144 0 4 90 1 0 152 10 12 300 2 0 344 0 1 142 0 28 69 3 0 5 0 1 82 343 0 387 1 2 9 3 0 32 1 0 10 20 14 50 0 4 13 2 0 39 6 5 15 4 1 16 9 0 14 3 1 4 1 0 14 3 1 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 23371 chr10 135534747 + 100269254 100269548 AluSg4 309 - 13 301 113812 9 6 0 279 chain 4464 chr10 135534747 + 100277054 100277105 MER20 218 - 145 196 201180 51 chain 117622 chr10 135534747 + 100280524 100281901 L1PA6 6164 + 4782 6162 31918 32 1 0 502 1 8 462 1 2 240 2 1 125 3 0 8 chain 86572 chr10 135534747 + 100297099 100298063 LTR13A 966 + 0 966 40942 665 0 1 284 0 1 15 chain 554620 chr10 135534747 + 100301086 100307572 L1PA3long 6157 + 0 6157 871 717 7 0 1867 2 1 495 324 0 101 0 1 817 0 1 27 0 1 2129 chain 42638 chr10 135534747 + 100324928 100325488 L1PA8 5853 - 0 554 65853 93 1 0 19 2 1 52 1 0 6 1 0 11 2 1 61 2 0 45 1 0 250 0 2 13 chain 22636 chr10 135534747 + 100342870 100343224 MER51B 395 + 0 395 117394 67 13 45 4 1 0 49 0 1 19 1 0 9 1 0 35 5 4 49 1 2 19 0 11 81 chain 15080 chr10 135534747 + 100354713 100354921 L1MA8 2339 - 1567 1786 141085 53 1 11 133 1 2 20 chain 29058 chr10 135534747 + 100356618 100356993 THE1C 375 - 0 375 88727 19 7 6 96 0 1 63 1 0 12 0 1 177 chain 4095 chr10 135534747 + 100361664 100361722 LTR40a 516 + 457 516 206013 31 1 2 26 chain 3652 chr10 135534747 + 100418953 100418997 MER8 282 - 22 66 212772 44 chain 37649 chr10 135534747 + 100430283 100430751 LTR2B 499 + 9 499 72622 5 1 0 97 0 19 141 0 1 4 0 3 220 chain 347832 chr10 135534747 + 100457618 100461407 L1PA3long 6157 + 2364 6157 11670 2277 1 0 717 0 5 794 chain 213967 chr10 135534747 + 100461436 100464246 L1PA10 4194 + 1303 4161 18229 99 0 1 51 5 4 161 0 1 136 9 6 348 9 32 80 0 4 59 1 0 107 3 0 40 0 7 191 4 1 206 0 3 136 4 5 148 1 0 27 0 13 275 10 12 67 0 1 57 5 6 202 0 3 9 0 4 86 0 1 39 0 2 172 0 2 5 13 5 29 5 4 11 chain 8407 chr10 135534747 + 100476106 100476206 L1PA2 6032 + 5932 6032 168804 100 chain 173653 chr10 135534747 + 100482609 100484549 L1PA4 6152 - 1888 3829 21628 41 0 1 283 0 1 1359 1 0 256 chain 164978 chr10 135534747 + 100484549 100486387 L1PA4 6152 + 4293 6136 22636 1005 0 4 177 0 1 656 chain 59295 chr10 135534747 + 100495014 100495774 THE1B-int 1605 + 806 1605 53227 269 14 52 280 0 1 197 chain 157427 chr10 135534747 + 100497061 100499216 L1PA7 6471 + 1 6469 23672 139 130 4416 18 1 0 4 0 1 15 0 1 129 0 1 4 2 1 234 7 0 43 0 1 250 5 11 353 1 5 682 0 5 4 4 0 120 0 21 10 chain 7667 chr10 135534747 + 100497240 100497330 L1P3 4156 - 3918 4008 170997 90 chain 566361 chr10 135534747 + 100542698 100548728 L1HS 6032 - 2 6032 126 6030 chain 8265 chr10 135534747 + 100550117 100550380 L1MA7 2200 + 1872 2105 169591 77 65 44 32 70 61 19 chain 84975 chr10 135534747 + 100558435 100559788 L1MA3 4352 + 37 1335 41521 65 1 0 6 18 20 30 23 17 82 53 1 48 2 0 5 1 3 120 4 5 194 0 1 131 10 8 95 23 24 119 0 3 68 1 0 19 11 10 40 2 1 128 12 13 42 chain 174703 chr10 135534747 + 100562083 100563978 L1PA3long 6157 - 4 1899 21513 1895 chain 4570 chr10 135534747 + 100565104 100565161 L1MA3 4352 + 4182 4240 199992 5 0 1 52 chain 3727 chr10 135534747 + 100572433 100572476 MER33 330 - 269 312 211515 43 chain 30294 chr10 135534747 + 100575610 100575945 L1PA4 6152 + 5817 6151 83948 185 1 0 149 chain 3165 chr10 135534747 + 100594927 100594965 L1MC5 759 + 576 614 221642 38 chain 11714 chr10 135534747 + 100612285 100612427 MER39 703 + 355 499 153407 34 0 2 108 chain 12306 chr10 135534747 + 100619705 100619898 MER44A 345 + 145 344 150990 29 0 6 56 13 12 11 4 5 80 chain 143621 chr10 135534747 + 100633016 100634818 L1PA8A 6298 - 8 2409 25540 292 9 1 167 0 1 108 2 0 45 0 4 181 6 13 103 13 11 189 0 594 46 1 5 372 0 1 268 chain 53221 chr10 135534747 + 100634818 100635498 L1PA8A 6298 + 3209 3891 56718 49 0 1 92 3 4 350 7 6 166 1 2 12 chain 42958 chr10 135534747 + 100655383 100655852 L1PA3long 6157 + 5688 6157 65465 469 chain 22126 chr10 135534747 + 100664918 100665163 L1PA2 6032 - 2 247 119678 245 chain 15908 chr10 135534747 + 100672140 100672635 L1MA2 4263 + 3848 4218 138633 110 9 7 93 18 12 13 2 4 11 207 90 16 4 2 12 chain 55274 chr10 135534747 + 100678001 100678596 L1PA3long 6157 + 5562 6157 55541 595 chain 41252 chr10 135534747 + 100686586 100687068 L1P1 4361 - 1437 1924 67483 224 1 6 257 chain 153639 chr10 135534747 + 100687068 100688755 L1PA3long 6157 + 4469 6156 24137 1354 0 1 328 1 0 4 chain 2953 chr10 135534747 + 100689667 100689700 MER58B 340 + 156 189 226034 33 chain 181291 chr10 135534747 + 100691159 100693472 L1PA10 4194 - 33 2361 20870 11 1 0 33 3 0 31 0 2 467 4 3 651 7 0 333 0 1 32 8 21 347 0 6 14 1 7 63 8 7 299 chain 554555 chr10 135534747 + 100696857 100702998 L1PA3long 6157 + 4 6157 879 50 2 1 1402 0 4 663 0 1 81 1 3 164 0 1 1585 0 1 394 0 4 1799 chain 8755 chr10 135534747 + 100717057 100717161 LTR47A 437 + 320 424 166894 104 chain 157910 chr10 135534747 + 100720497 100722193 L1HS 6032 - 2 1696 23605 121 2 0 1573 chain 43816 chr10 135534747 + 100722193 100722662 L1HS 6032 + 3872 4341 64324 469 chain 45339 chr10 135534747 + 100742827 100743424 Charlie3 2679 - 5 599 62669 50 36 33 511 chain 531036 chr10 135534747 + 100743427 100749405 L1PA4 6152 + 164 6143 4076 1063 5 6 2449 3 0 279 0 3 2179 chain 95829 chr10 135534747 + 100774512 100775575 L1PA4 6152 + 5074 6141 37870 230 0 4 833 chain 92146 chr10 135534747 + 100776175 100777457 L1PA13 3608 - 123 1401 38920 17 1 0 20 2 0 6 0 4 42 2 0 5 1 0 35 3 0 20 1 0 63 2 0 104 0 1 8 1 0 24 11 7 54 7 9 91 5 7 151 0 1 125 0 2 75 0 1 85 6 6 315 chain 131294 chr10 135534747 + 100784467 100789044 L1MA1 4479 + 285 4162 27800 67 0 1 4 1 0 19 19 16 149 16 15 144 0 4 86 4 0 27 2472 1794 59 2 1 100 2 0 33 1 0 20 7 10 32 1 0 11 0 4 65 13 12 27 12 10 60 0 5 101 5 1 64 1 0 21 6 5 11 5 0 28 0 6 81 14 11 129 2 0 133 12 11 77 2 0 16 1 0 67 17 18 19 1 0 87 1 0 6 3 0 122 5 4 27 2 0 17 0 1 19 1 0 9 1 0 11 chain 89012 chr10 135534747 + 100789058 100790067 LTR13 1007 - 0 1007 39997 567 1 0 136 1 0 304 chain 116018 chr10 135534747 + 100826544 100828051 THE1B-int 1605 - 19 1605 32448 407 0 1 4 1 0 462 7 6 245 0 64 14 0 6 98 0 6 163 9 12 80 5 6 12 chain 29450 chr10 135534747 + 100846099 100846408 AluYa5 310 - 1 310 86847 309 chain 135165 chr10 135534747 + 100847985 100849948 L1PB1 5432 - 9 1977 26981 11 1 0 8 1 0 12 1 0 22 1 0 9 1 0 13 2 0 13 12 9 12 0 1 4 18 7 6 2 0 16 1 0 24 0 1 18 1 2 14 2 3 50 2 0 9 9 5 10 1 0 6 1 0 21 16 14 290 0 9 44 0 14 19 13 14 6 0 2 66 14 11 95 0 6 52 0 1 267 0 2 35 1 0 170 10 8 266 1 4 118 11 12 35 5 7 95 chain 15188 chr10 135534747 + 100855210 100855620 L1MB8 1703 - 44 418 140806 14 3 5 13 9 0 25 65 14 62 29 37 55 1 0 13 1 0 50 49 65 21 chain 531569 chr10 135534747 + 100858773 100864829 L1PA5 6144 + 3 6144 4013 1926 0 4 629 0 4 12 0 1 484 0 3 2265 1 75 13 1 0 725 chain 14678 chr10 135534747 + 100878299 100878489 L1PA13 3608 + 2713 2905 142338 126 0 1 30 5 6 29 chain 46089 chr10 135534747 + 100890240 100890796 LTR6B 557 - 0 557 61957 22 0 1 33 0 1 6 0 1 98 2 0 35 0 1 312 1 0 47 chain 25016 chr10 135534747 + 100891008 100891586 L1PB1 5432 + 4881 5384 104704 138 0 1 33 121 61 24 1 0 4 25 20 6 2 0 37 1 0 15 2 1 16 8 7 37 1 0 15 10 12 13 14 11 14 2 0 24 1 0 14 chain 513954 chr10 135534747 + 100892202 100898640 L1PA7 6471 + 0 6451 5783 243 0 1 8 46 53 107 2 0 61 1 0 98 3 0 171 10 15 131 4 8 6 4 0 350 0 19 462 0 4 73 1 0 321 6 7 226 0 1 59 0 3 214 0 1 143 9 19 52 1 0 303 0 8 195 54 15 151 0 1 307 5 4 1071 2 0 321 0 3 902 1 0 314 chain 7249 chr10 135534747 + 100908604 100908772 L1PB1 5432 + 5280 5426 175768 16 53 36 14 2 0 46 1 0 12 1 0 14 1 0 8 chain 554145 chr10 135534747 + 100912494 100918515 L1PA2 6032 + 0 6031 930 252 5 4 2885 0 4 2739 0 7 140 chain 24629 chr10 135534747 + 100924570 100924865 AluSc 308 + 10 306 106832 115 0 1 180 chain 523005 chr10 135534747 + 100934579 100941646 L1PA7 6471 + 6 6469 4865 399 6 0 12 39 39 156 1 2 459 1 0 4 0 1 63 0 1 15 4 6 733 0 3 89 1 0 421 5 4 100 7 9 430 0 1 197 0 1 115 0 2 235 1 0 367 0 1 693 1 9 41 0 1 159 0 3 178 5 2 106 7 8 402 0 5 26 1 0 117 0 3 92 0 1 91 318 1 188 314 0 23 9 12 131 0 1 143 0 2 150 2 0 10 chain 71361 chr10 135534747 + 100974343 100975383 L1PA8 5853 + 4838 5853 47765 171 0 4 352 19 8 87 26 11 63 0 2 28 1 0 44 2 0 66 0 1 4 1 0 11 2 0 4 1 0 46 2 1 19 2 1 7 0 4 65 6 5 11 chain 36867 chr10 135534747 + 101011813 101012351 L1PA16 3655 + 1482 2017 73702 171 0 1 43 44 42 46 3 0 10 1 0 190 0 1 21 0 1 9 chain 4398 chr10 135534747 + 101014535 101014605 L1MB8 1703 + 1472 1529 201951 49 13 0 8 chain 87075 chr10 135534747 + 101016640 101017723 MER11B 1079 + 0 1079 40747 220 0 5 34 3 0 304 11 10 10 13 12 174 6 0 115 0 1 168 1 2 24 chain 161054 chr10 135534747 + 101020539 101023003 HERVH-int 3825 + 755 3825 23188 8 0 2 15 2 0 7 7 12 243 1 0 12 7 5 54 71 74 42 15 0 195 1 0 6 9 0 258 0 27 80 3 0 5 0 3 62 38 39 182 12 17 716 230 823 183 chain 25446 chr10 135534747 + 101024753 101025124 LTR7B 505 + 0 489 102475 105 0 10 55 19 87 32 2 1 21 0 41 89 14 13 20 0 1 14 chain 326557 chr10 135534747 + 101027576 101033162 L1PB1 5432 + 822 5422 12320 276 0 1 98 9 10 9 0 2 23 0 1 127 381 41 124 307 0 44 14 13 149 4 3 22 1 3 6 2 0 178 49 27 357 3 0 51 1 0 71 0 1 9 0 3 21 0 1 139 13 11 17 24 13 169 1 0 88 0 4 57 0 1 23 1 0 705 29 22 422 17 23 123 301 0 15 8 19 135 0 1 24 0 4 106 1 2 5 0 1 175 3 1 101 0 2 68 0 4 130 1 2 9 3 0 24 1 0 4 24 19 7 2 0 50 2 1 12 6 5 45 1 0 13 24 14 18 9 6 14 2 0 23 1 0 23 5 4 8 1 0 18 chain 36928 chr10 135534747 + 101068342 101068811 MER75 514 + 44 514 73620 443 0 1 26 chain 23036 chr10 135534747 + 101087765 101088050 AluSq2 311 + 9 288 115470 116 9 3 160 chain 3524 chr10 135534747 + 101095494 101095789 MLT1B 390 - 51 365 214979 24 171 170 19 55 75 26 chain 21253 chr10 135534747 + 101114941 101115183 L1PA4 6152 + 5900 6143 123009 167 0 1 75 chain 19659 chr10 135534747 + 101133568 101133882 L1PB4 2604 - 119 410 128223 78 1 2 26 32 5 105 6 9 66 chain 6235 chr10 135534747 + 101159546 101159641 LTR49 580 + 484 580 183279 46 10 11 39 chain 20124 chr10 135534747 + 101167564 101167835 L1PA8 5853 - 0 265 126756 93 1 0 19 2 1 50 1 0 11 2 1 70 2 0 20 chain 492349 chr10 135534747 + 101172284 101177818 L1PA5 6144 + 561 6144 7252 4 1 0 415 0 6 1326 0 1 259 1 0 1218 0 1 892 0 14 914 1 2 168 0 27 163 0 1 172 chain 30208 chr10 135534747 + 101191959 101192458 L1PA15 4387 - 21 501 84169 10 1 0 27 5 0 14 3 1 35 11 12 50 1 0 10 0 2 5 7 1 14 1 0 54 1 0 27 1 0 81 8 1 25 0 1 64 1 0 23 0 3 20 chain 5417 chr10 135534747 + 101202359 101202424 MER5A1 166 + 53 118 190833 65 chain 5154 chr10 135534747 + 101217700 101217781 L1PB1 5432 + 5332 5409 193507 14 2 0 24 1 0 34 1 0 5 chain 12681 chr10 135534747 + 101219343 101219587 L1MB3 1562 - 41 253 149524 52 3 2 22 1 0 6 2 0 6 39 12 63 8 7 42 chain 24707 chr10 135534747 + 101233172 101234111 L1MB2 1706 - 217 810 106393 133 12 20 78 19 15 16 19 21 27 35 36 15 467 113 97 3 4 18 chain 138728 chr10 135534747 + 101252487 101254039 L1PA4 6152 + 4592 6151 26361 428 0 7 1124 chain 3339 chr10 135534747 + 101262422 101262461 U7 62 + 1 40 218232 39 chain 29153 chr10 135534747 + 101269924 101270303 L1MA3 4352 + 3434 3808 88294 256 1 2 38 6 0 78 chain 20683 chr10 135534747 + 101276719 101276978 Tigger1 2417 - 1159 1418 125030 259 chain 21843 chr10 135534747 + 101310065 101310331 AluSq2 311 + 22 290 120844 98 0 2 168 chain 40557 chr10 135534747 + 101384703 101385266 LTR12_ 688 - 1 688 68499 156 0 103 212 4 0 70 3 69 15 41 0 62 chain 11395 chr10 135534747 + 101388654 101388787 L1MB5 1630 + 999 1132 154719 133 chain 30000 chr10 135534747 + 101391635 101391952 AluYb9 318 - 1 318 84814 317 chain 528375 chr10 135534747 + 101400324 101406444 L1PA5 6144 - 0 6144 4366 850 1 0 246 0 1 896 0 2 973 0 1 918 0 2 46 0 10 415 1 2 460 8 10 142 9 0 264 13 12 301 12 0 6 3 17 75 1 0 4 0 1 355 9 23 112 chain 3376 chr10 135534747 + 101431267 101431309 Tigger3b 1229 - 1134 1175 217563 13 1 0 28 chain 7748 chr10 135534747 + 101484405 101484505 MER30 238 - 12 113 172611 27 0 3 58 2 0 13 chain 19317 chr10 135534747 + 101523955 101524178 AluY 311 + 82 306 129188 50 0 1 173 chain 203091 chr10 135534747 + 101531216 101533380 L1HS 6032 + 3867 6031 18985 2164 chain 3866 chr10 135534747 + 101538086 101538127 L1MCa 1829 - 345 386 209358 41 chain 27766 chr10 135534747 + 101574755 101575107 L1PA8A 6298 - 8 361 93819 95 7 0 5 1 8 130 0 1 114 chain 72134 chr10 135534747 + 101580568 101581554 LTR5_Hs 974 - 0 974 47415 103 47 52 67 39 14 82 1 0 188 0 1 177 0 1 122 1 0 39 5 13 115 chain 537755 chr10 135534747 + 101581648 101587716 HERVK-int 6823 - 791 6823 3192 24 1 0 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 560 1 0 2193 0 3 731 1 2 191 1 0 7 2 0 372 1 0 438 1 0 311 1 0 19 1 0 28 2 0 205 1 0 238 1 0 67 12 0 17 2 0 12 1 0 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 134988 chr10 135534747 + 101597223 101599876 SVA_F 1814 - 0 1479 27017 10 2 0 591 278 0 251 908 14 17 0 1 50 1 0 545 chain 2735 chr10 135534747 + 101597826 101597877 SVA_F 1814 - 777 826 137039 26 1 0 10 1 0 13 chain 9561 chr10 135534747 + 101597877 101598104 SVA_F 1814 - 601 826 70012 208 6 4 13 chain 19375 chr10 135534747 + 101598355 101598815 SVA_F 1814 - 1045 1182 70012 18 255 19 68 90 3 29 chain 18173 chr10 135534747 + 101598373 101598628 SVA_F 1814 - 567 722 87233 79 100 0 76 chain 2835 chr10 135534747 + 101598452 101598482 SVA_F 1814 - 822 852 152575 30 chain 4125 chr10 135534747 + 101598483 101598531 SVA_F 1814 - 867 916 205590 10 0 1 38 chain 4419 chr10 135534747 + 101598696 101598758 SVA_F 1814 - 790 852 87233 62 chain 1204 chr10 135534747 + 101598758 101598786 SVA_F 1814 - 725 753 150365 28 chain 2051 chr10 135534747 + 101598815 101598844 SVA_F 1814 - 704 733 139273 29 chain 8328 chr10 135534747 + 101598850 101599114 SVA_F 1814 - 637 803 133990 61 98 0 105 chain 2624 chr10 135534747 + 101598911 101598938 SVA_F 1814 - 825 852 175529 27 chain 8635 chr10 135534747 + 101599115 101599263 SVA_F 1814 - 803 915 158520 17 2 0 32 0 15 35 49 0 13 chain 2649 chr10 135534747 + 101599201 101599232 SVA_F 1814 - 613 643 212320 14 1 0 16 chain 10754 chr10 135534747 + 101608699 101608992 AluSp 311 + 0 287 157183 17 0 134 18 146 6 112 chain 445948 chr10 135534747 + 101623226 101629578 L1PA8 5853 - 0 5803 8876 91 5 4 17 2 1 40 7 0 7 0 6 8 2 1 70 2 0 46 1 0 275 9 8 83 0 3 18 6 5 72 0 3 11 0 2 52 7 6 6 0 1 10 0 1 379 327 0 22 1 0 214 10 0 71 0 4 114 3 9 85 0 2 235 0 5 124 0 12 41 0 2 58 8 92 104 14 6 180 0 11 37 2 6 224 1 3 25 3 7 17 0 2 33 8 1 5 2 0 5 0 2 148 1 0 62 0 2 378 1 5 54 0 1 193 1 0 286 7 5 194 291 0 99 0 2 552 4 1 253 7 1 9 0 8 16 0 4 80 2 1 207 18 6 147 1 0 44 52 16 13 1 2 8 2 0 22 chain 5911 chr10 135534747 + 101630204 101630289 L1MA4 2864 - 675 762 186079 69 1 3 15 chain 3298 chr10 135534747 + 101637230 101637281 MER3 215 + 118 163 219002 34 6 0 11 chain 139195 chr10 135534747 + 101650958 101652532 SVA_F 1814 + 0 1812 26266 695 1 166 26 0 1 37 1 0 4 46 33 149 0 49 63 0 37 552 chain 4197 chr10 135534747 + 101651722 101651768 SVA_F 1814 + 1043 1089 120268 46 chain 24779 chr10 135534747 + 101683906 101684204 AluY 311 + 0 287 106000 15 6 0 111 5 0 161 chain 3865 chr10 135534747 + 101688544 101688584 MER66B 489 + 295 335 209377 40 chain 23867 chr10 135534747 + 101709763 101710115 THE1B 368 + 0 368 111099 44 0 15 49 1 0 27 1 3 13 11 12 5 2 0 11 1 0 5 0 1 87 1 2 94 chain 123856 chr10 135534747 + 101710149 101711672 THE1B-int 1605 + 34 1591 29747 398 17 42 64 0 4 326 0 5 718 chain 25169 chr10 135534747 + 101711684 101712037 THE1B 368 + 0 368 103914 25 1 0 5 0 1 13 5 20 104 2 0 157 8 10 33 chain 7848 chr10 135534747 + 101751206 101751323 L1MB8 1703 - 111 234 172010 96 7 13 14 chain 3983 chr10 135534747 + 101757331 101757421 L1MC5 759 + 641 721 207640 25 12 13 35 11 0 7 chain 19148 chr10 135534747 + 101771218 101771445 AluSc 308 + 54 282 129686 76 0 1 151 chain 27692 chr10 135534747 + 101785789 101786134 MER4E1 777 - 90 460 94071 141 2 6 106 0 1 82 0 20 14 chain 6872 chr10 135534747 + 101794908 101794993 MER4A 717 + 41 126 178417 85 chain 3297 chr10 135534747 + 101807102 101807139 MER39B 650 + 262 299 219053 37 chain 4004 chr10 135534747 + 101815237 101815282 L1MB3 1562 - 245 290 207325 45 chain 167175 chr10 135534747 + 101851975 101854321 SVA_F 1814 + 10 1814 22376 871 1 0 35 48 0 32 77 14 198 430 0 654 chain 2639 chr10 135534747 + 101852962 101852993 SVA_F 1814 + 899 929 204969 26 1 0 4 chain 2731 chr10 135534747 + 101853271 101853314 SVA_F 1814 + 855 898 184940 43 chain 7729 chr10 135534747 + 101853335 101853418 SVA_F 1814 + 1006 1089 135496 83 chain 18733 chr10 135534747 + 101853418 101853629 SVA_F 1814 + 898 1121 130871 49 0 15 39 2 0 10 1 0 110 chain 43152 chr10 135534747 + 101862690 101863201 MER9a2 513 - 0 513 65229 66 0 2 445 chain 18127 chr10 135534747 + 101871579 101871980 LTR35A 463 + 84 463 132527 43 8 5 37 2 0 22 0 1 17 2 0 9 1 0 11 16 12 16 1 0 17 1 0 14 4 1 25 1 0 7 5 2 21 70 68 51 chain 23844 chr10 135534747 + 101881550 101881822 AluSp 311 + 8 280 111219 272 chain 6402 chr10 135534747 + 101884971 101885097 PRIMA4_LTR 623 - 12 140 182012 8 1 0 14 1 0 23 16 21 43 5 4 15 chain 19824 chr10 135534747 + 101885102 101885470 THE1D 372 - 0 372 127737 10 2 3 125 74 74 56 2 1 39 10 14 50 chain 28059 chr10 135534747 + 101915261 101915570 AluYa5 310 - 3 310 92791 9 2 0 298 chain 8232 chr10 135534747 + 101938276 101938383 MER5A 189 + 6 111 169766 49 2 0 56 chain 4931 chr10 135534747 + 101956914 101957017 Tigger3a 397 - 178 340 195927 49 4 14 13 21 70 16 chain 48703 chr10 135534747 + 101968184 101969124 PABL_A 660 + 0 660 59953 53 0 1 33 287 0 71 12 17 71 0 2 240 16 15 157 chain 28429 chr10 135534747 + 101969848 101970143 AluYa5 310 - 15 310 91470 295 chain 23411 chr10 135534747 + 101988139 101988422 AluSx1 309 + 11 293 113595 122 2 0 109 0 1 50 chain 22296 chr10 135534747 + 102028167 102028438 AluSc8 310 + 0 304 118930 45 0 30 57 0 3 169 chain 60195 chr10 135534747 + 102029485 102032999 L1MA4 2864 + 990 2809 52731 8 1 0 190 0 9 11 3 0 33 2471 794 26 0 5 52 1 0 56 22 23 30 11 9 45 9 11 42 4 0 163 3 2 20 1 2 76 1 0 67 0 1 6 3 0 20 43 26 7 1 0 14 1 0 25 7 5 41 chain 20564 chr10 135534747 + 102029740 102029994 AluY 311 + 49 296 125415 206 7 0 41 chain 169399 chr10 135534747 + 102036282 102038579 SVA_D 2077 + 58 2072 22134 358 2 1 270 0 40 181 6 4 31 45 5 86 99 0 8 0 1 5 51 0 133 49 0 207 0 1 4 117 14 516 0 20 129 chain 3233 chr10 135534747 + 102037130 102037175 SVA_D 2077 + 1130 1175 75827 45 chain 5532 chr10 135534747 + 102037283 102037360 SVA_D 2077 + 1312 1390 75827 76 0 1 1 chain 3917 chr10 135534747 + 102037373 102037423 SVA_D 2077 + 1174 1224 158257 50 chain 1940 chr10 135534747 + 102037557 102037584 SVA_D 2077 + 1533 1559 75827 9 1 0 17 chain 1964 chr10 135534747 + 102037817 102037862 SVA_D 2077 + 1343 1388 99419 45 chain 2105 chr10 135534747 + 102037885 102037911 SVA_D 2077 + 1534 1559 237602 8 1 0 17 chain 20780 chr10 135534747 + 102074954 102075321 L1PA8 5853 - 0 286 124679 93 1 0 19 80 4 48 2 1 8 2 1 71 3 1 40 chain 4633 chr10 135534747 + 102075067 102075117 L1PA8 5853 - 38 88 198209 50 chain 8948 chr10 135534747 + 102077326 102077448 Charlie1 1172 - 217 342 165881 25 1 2 51 0 2 45 chain 24702 chr10 135534747 + 102080945 102081245 AluSx3 311 + 11 311 106425 300 chain 18785 chr10 135534747 + 102082010 102082246 AluSx1 309 + 9 294 130721 183 0 49 53 chain 26616 chr10 135534747 + 102118086 102118374 AluYb8 318 + 20 307 97613 112 1 0 175 chain 40548 chr10 135534747 + 102136463 102136925 LTR2 463 + 0 463 68513 368 0 1 94 chain 27542 chr10 135534747 + 102140676 102141051 LTR7B 505 + 0 494 94526 105 0 10 56 13 81 59 0 41 55 0 1 33 14 13 40 chain 169415 chr10 135534747 + 102141593 102145697 HERVH-int 3825 + 765 3825 22130 13 1 0 13 7 8 343 49 52 29 15 0 146 1101 6 52 9 0 6 0 1 168 0 1 4 1 0 84 0 11 298 0 4 82 4 9 48 0 4 261 0 1 5 5 4 163 23 0 214 1 0 20 694 763 104 0 2 141 chain 26011 chr10 135534747 + 102147800 102148155 LTR7B 505 + 0 505 99974 105 0 10 56 5 107 7 2 0 26 0 41 89 14 13 51 chain 4563 chr10 135534747 + 102148158 102148208 Charlie1a 1436 + 960 1010 200081 50 chain 545825 chr10 135534747 + 102166087 102172241 L1PA4 6152 + 0 6136 1970 579 9 10 2703 1 0 624 0 2 689 0 1 151 22 0 1279 0 1 97 chain 12630 chr10 135534747 + 102182711 102182869 L1PA16 3655 - 66 221 149729 12 3 0 143 chain 12630 chr10 135534747 + 102185628 102185786 L1PA16 3655 + 3434 3589 149728 144 3 0 11 chain 521017 chr10 135534747 + 102214247 102220322 L1PA5 6144 + 0 6141 5051 120 4 18 18 0 12 153 0 3 107 1 0 4 6 7 424 0 2 27 3 5 175 1 4 90 9 0 690 1 0 454 2 1 130 10 1 13 0 1 170 0 19 23 7 0 505 1 0 304 0 3 25 1 0 1198 0 1 192 0 1 76 1 0 239 1 0 5 4 5 428 1 8 11 0 28 441 chain 16113 chr10 135534747 + 102255392 102255598 MER107 203 - 0 203 138017 38 5 0 55 0 2 108 chain 21766 chr10 135534747 + 102317212 102317479 AluSp 311 - 22 290 121151 16 1 0 66 2 0 15 0 3 29 0 1 138 chain 27710 chr10 135534747 + 102450184 102450486 AluYf4 310 - 8 310 94001 302 chain 26602 chr10 135534747 + 102455565 102455870 AluSp 311 + 2 307 97647 305 chain 119992 chr10 135534747 + 102461325 102462640 L1PA3long 6157 - 13 1334 30955 831 0 6 484 chain 122477 chr10 135534747 + 102462640 102463970 L1PA3long 6157 + 3425 4758 30230 571 0 3 759 chain 25118 chr10 135534747 + 102465260 102465571 AluY 311 + 1 295 104182 77 17 0 217 chain 3985 chr10 135534747 + 102476649 102476693 MER4E1 777 + 664 708 207625 44 chain 13095 chr10 135534747 + 102479075 102479298 L1MA5A 2387 - 87 297 147867 5 1 0 65 26 18 25 1 0 30 5 3 47 1 0 17 chain 24243 chr10 135534747 + 102486933 102487188 AluYa5 310 - 55 310 108977 255 chain 4264 chr10 135534747 + 102603700 102603749 Tigger2a 444 + 0 49 203708 49 chain 46996 chr10 135534747 + 102604169 102604919 L1PB1 5432 - 5 724 61214 5 1 0 4 1 0 14 1 0 13 1 0 4 1 0 17 1 0 23 3 1 15 1 0 4 3 1 18 2 3 6 3 0 3 10 0 15 1 0 44 1 0 18 2 1 26 0 1 24 2 0 8 17 12 9 1 0 21 3 0 7 4 7 107 1 2 181 0 1 104 chain 23426 chr10 135534747 + 102629705 102629999 AluSx 319 + 0 289 113495 10 3 0 274 2 0 5 chain 5836 chr10 135534747 + 102666940 102667003 HY3 101 - 9 72 186801 63 chain 22614 chr10 135534747 + 102751487 102751778 AluY 311 + 0 287 117510 83 6 7 36 8 0 64 0 3 94 chain 89263 chr10 135534747 + 102793289 102794317 LTR5A 1029 - 0 1029 39903 643 1 2 384 chain 12022 chr10 135534747 + 102837170 102837299 L1PA3long 6157 + 6028 6157 152113 129 chain 4182 chr10 135534747 + 102860941 102860992 MER5B 177 - 127 177 204799 10 1 0 40 chain 35477 chr10 135534747 + 102943014 102943503 MER41B 635 + 0 496 75585 64 22 27 4 0 1 29 1 2 369 chain 34659 chr10 135534747 + 102943519 102944031 LTR7B 505 - 9 505 76679 23 1 2 17 14 13 157 0 55 21 71 0 208 chain 25711 chr10 135534747 + 102946673 102948650 HERVH-int 3825 - 0 1722 101247 181 0 227 12 1607 1124 87 0 1 90 chain 42270 chr10 135534747 + 102958074 102958932 L1MA3 4352 + 3441 3993 66305 37 10 12 423 308 0 80 chain 34983 chr10 135534747 + 102960759 102961208 LTR7 482 - 0 482 76205 49 12 14 124 0 31 38 0 1 81 2 1 143 chain 28789 chr10 135534747 + 102962539 102963171 MER41B 635 + 219 635 89946 238 244 23 68 14 19 68 chain 17157 chr10 135534747 + 102962789 102963007 AluY 311 + 82 300 135144 36 2 0 81 0 1 76 0 1 23 chain 26607 chr10 135534747 + 102966419 102966722 AluY 311 + 3 307 97630 129 0 1 174 chain 3891 chr10 135534747 + 102967964 102968014 LTR45C 530 + 37 87 209013 50 chain 13696 chr10 135534747 + 103028905 103029241 L1MB3 1562 + 1226 1554 145613 35 1 12 71 119 94 17 6 13 55 1 0 31 chain 3761 chr10 135534747 + 103029643 103029685 MER113 458 + 108 150 210957 42 chain 28114 chr10 135534747 + 103086405 103086760 THE1A 353 + 0 353 92592 109 2 1 153 1 0 90 chain 128155 chr10 135534747 + 103086760 103088320 THE1A-int 1579 + 0 1568 28536 261 0 1 304 8 14 703 11 12 273 chain 28351 chr10 135534747 + 103088330 103088683 THE1A 353 + 0 353 91759 110 1 0 94 0 2 40 1 0 107 chain 26653 chr10 135534747 + 103107506 103107811 AluYf5 307 - 6 307 97479 37 6 4 134 2 0 126 chain 4605 chr10 135534747 + 103107928 103107987 L1MA7 2200 + 1782 1840 199570 48 1 0 10 chain 23494 chr10 135534747 + 103121717 103122013 AluSc5 308 - 18 308 113156 9 8 0 211 0 2 68 chain 13755 chr10 135534747 + 103124618 103124788 U2 167 - 3 167 145420 22 2 0 3 2 0 9 2 0 130 chain 24933 chr10 135534747 + 103124823 103125123 AluSp 311 - 5 305 105143 300 chain 6561 chr10 135534747 + 103131617 103131710 U13_ 108 - 12 108 180773 11 3 6 79 chain 42432 chr10 135534747 + 103134092 103134552 L1PA2 6032 + 5572 6032 66105 460 chain 16452 chr10 135534747 + 103144967 103145152 AluY 311 + 126 311 137057 185 chain 10408 chr10 135534747 + 103175863 103175989 L1MB2 1706 - 216 342 158648 126 chain 136534 chr10 135534747 + 103181226 103182780 L1PA5 6144 - 1 1556 26739 139 7 0 51 0 1 35 0 1 405 1 2 352 0 3 559 0 2 5 chain 24854 chr10 135534747 + 103197916 103198207 AluY 311 + 15 310 105600 111 0 2 147 0 2 33 chain 29532 chr10 135534747 + 103269000 103269310 AluYa5 310 - 0 310 86524 310 chain 29066 chr10 135534747 + 103277666 103277968 AluYa5 310 - 8 310 88696 302 chain 24591 chr10 135534747 + 103309207 103309493 AluY 311 + 18 305 107036 114 0 1 172 chain 6440 chr10 135534747 + 103350558 103350695 L1MB3 1562 - 137 275 181705 4 1 0 23 0 2 45 1 0 8 34 35 21 chain 5407 chr10 135534747 + 103382078 103382202 L1MD2 1676 + 645 768 190916 25 39 38 60 chain 23713 chr10 135534747 + 103393057 103393362 L1PA7 6471 + 6159 6468 111964 78 0 4 66 15 15 146 chain 33674 chr10 135534747 + 103394720 103395260 MER1A 529 + 0 529 78139 83 22 27 36 9 8 80 6 7 206 33 24 9 7 0 49 chain 14074 chr10 135534747 + 103489920 103490084 THE1C 375 - 211 375 144309 164 chain 23875 chr10 135534747 + 103497915 103498200 AluY 311 + 0 286 111056 5 3 0 120 0 4 157 chain 9809 chr10 135534747 + 103555472 103555623 MER30 238 - 1 176 161549 44 1 4 29 1 7 15 1 16 60 chain 25041 chr10 135534747 + 103562148 103562444 AluSp 311 + 0 300 104591 94 0 4 202 chain 4305 chr10 135534747 + 103580096 103580148 LTR56 451 + 5 57 203149 52 chain 66709 chr10 135534747 + 103623869 103624643 L1PA5 6144 + 5331 6128 49783 18 0 19 115 0 3 576 0 1 65 chain 13310 chr10 135534747 + 103625059 103625247 Tigger2 2703 + 199 390 147049 59 0 1 9 2 0 11 3 7 104 chain 5148 chr10 135534747 + 103654892 103654954 L1MB8 1703 + 511 573 193558 62 chain 20816 chr10 135534747 + 103680529 103680842 L1MB2 1706 + 1356 1662 124548 149 0 3 67 34 25 11 1 0 51 chain 21002 chr10 135534747 + 103700210 103700451 L1PA5 6144 - 0 241 123905 241 chain 22441 chr10 135534747 + 103706693 103706961 AluSg7 307 + 29 298 118291 102 0 1 166 chain 4315 chr10 135534747 + 103713349 103713403 L1ME1 1623 + 1029 1083 203019 54 chain 35138 chr10 135534747 + 103740493 103740912 L1PA8A 6298 + 5857 6287 76010 327 1 0 41 0 12 50 chain 15960 chr10 135534747 + 103778723 103780828 Tigger3b 1229 + 201 989 138482 90 1810 523 57 0 2 64 43 0 25 0 11 16 chain 26333 chr10 135534747 + 103793176 103793474 AluYf4 310 - 12 310 98684 298 chain 132145 chr10 135534747 + 103795136 103796643 SVA_C 1631 + 0 1631 27607 8 0 9 615 0 37 50 0 80 51 5 1 59 1 0 40 1 0 529 0 4 148 chain 22990 chr10 135534747 + 103809021 103809292 AluSz 310 + 5 276 115669 271 chain 23969 chr10 135534747 + 103914779 103915063 AluSp 311 - 10 293 110517 24 0 2 112 3 0 145 chain 61012 chr10 135534747 + 103924077 103924788 L1PA5 6144 + 5412 6124 52326 384 0 2 201 1 3 17 4 0 20 0 1 84 chain 21266 chr10 135534747 + 103926267 103926516 AluSg7 307 - 43 293 122975 132 0 1 117 chain 9989 chr10 135534747 + 103938326 103938509 Tigger4b 360 - 0 183 160637 20 47 47 116 chain 54701 chr10 135534747 + 103940609 103941694 MER4-int 2692 - 0 770 55901 86 11 6 23 3 13 98 1 0 189 5 6 83 328 7 43 1 2 123 5 3 30 0 1 33 0 1 23 chain 19854 chr10 135534747 + 103942236 103942475 AluSg7 307 - 52 293 127643 101 3 4 18 0 1 117 chain 21763 chr10 135534747 + 103943534 103943784 THE1B-int 1605 - 1180 1429 121166 55 1 0 194 chain 27294 chr10 135534747 + 103947176 103947689 LOR1-int 1871 + 78 579 95291 11 13 1 74 1 0 4 0 3 7 41 44 34 5 1 10 2 0 20 1 0 8 9 11 79 29 28 158 0 1 7 chain 2728 chr10 135534747 + 103947992 103948116 MER52D 1964 - 820 863 229773 12 80 0 16 1 0 15 chain 35953 chr10 135534747 + 103952900 103953343 LTR71A 459 - 13 459 74953 59 0 2 165 0 1 219 chain 25409 chr10 135534747 + 103959678 103960250 LTR12C 1709 - 246 1059 102640 23 204 372 12 3 19 10 0 41 54 0 1 4 6 21 69 1 0 10 0 1 176 chain 4274 chr10 135534747 + 103960250 103960306 LTR12C 1709 - 981 1037 163264 56 chain 3434 chr10 135534747 + 103966204 103966258 L1PA2 6032 + 5984 6032 216498 35 2 0 7 4 0 6 chain 21457 chr10 135534747 + 103968904 103969151 AluSp 311 + 10 259 122303 56 0 2 191 chain 26536 chr10 135534747 + 103972846 103973284 L1MA1 4479 + 3714 4138 97905 25 2 0 16 1 0 7 0 1 62 2 1 9 7 5 19 1 0 88 9 5 10 8 7 109 1 0 29 4 2 29 chain 24675 chr10 135534747 + 104030806 104031085 AluYk4 311 - 24 303 106588 279 chain 29493 chr10 135534747 + 104048186 104048504 AluYb8 318 + 0 316 86659 291 2 0 25 chain 118368 chr10 135534747 + 104060733 104062042 SVA_C 1631 - 1 1615 31660 16 5 0 503 0 296 759 2 0 10 0 16 14 chain 46521 chr10 135534747 + 104068135 104068642 L1PA3long 6157 + 5650 6157 61580 507 chain 8833 chr10 135534747 + 104091922 104092051 MER2 342 - 127 262 166474 66 8 14 55 chain 73600 chr10 135534747 + 104151201 104152153 LTR5_Hs 974 + 0 974 46730 169 1 0 116 0 1 181 0 1 177 12 11 52 3 11 100 8 15 16 17 24 100 chain 25219 chr10 135534747 + 104198534 104198844 AluY 311 + 0 303 103640 56 9 1 75 0 1 170 chain 81809 chr10 135534747 + 104214131 104215092 LTR5_Hs 974 - 0 974 42839 104 2 0 36 8 15 107 0 1 25 0 4 598 0 3 81 chain 16704 chr10 135534747 + 104242439 104242659 MER30 238 - 2 238 136394 109 4 20 107 chain 24138 chr10 135534747 + 104246165 104246470 AluSp 311 + 1 296 109528 148 4 1 24 1 0 114 6 0 8 chain 23047 chr10 135534747 + 104289461 104289724 AluSc 308 + 40 303 115411 263 chain 9250 chr10 135534747 + 104351280 104351384 U6 107 + 0 104 164303 104 chain 23858 chr10 135534747 + 104446624 104446934 AluSg7 307 - 0 306 111140 33 0 1 121 0 3 7 8 5 5 2 0 79 8 5 47 chain 27660 chr10 135534747 + 104450878 104451176 L1PA2 6032 - 0 298 94181 298 chain 25436 chr10 135534747 + 104456024 104456320 AluSg7 307 - 11 307 102522 296 chain 22752 chr10 135534747 + 104456937 104457232 AluSg7 307 - 12 306 116817 19 4 2 146 2 3 124 chain 20237 chr10 135534747 + 104460559 104460782 AluSp 311 - 77 300 126421 223 chain 24596 chr10 135534747 + 104471226 104471531 AluY 311 + 0 300 107015 123 11 6 171 chain 23817 chr10 135534747 + 104479764 104480073 AluSc8 310 + 0 309 111383 56 7 4 69 1 4 176 chain 81913 chr10 135534747 + 104518327 104519275 LTR13A 966 - 0 952 42800 4 0 1 273 0 1 62 6 4 543 1 5 59 chain 29208 chr10 135534747 + 104528123 104528445 AluYb9 318 - 0 318 88017 119 1 0 73 3 0 126 chain 4576 chr10 135534747 + 104543455 104543517 MER20 218 + 91 151 199917 10 2 0 50 chain 80550 chr10 135534747 + 104597869 104599000 MER11A 1151 - 4 1151 43369 42 0 7 114 0 1 28 1 0 34 0 1 36 18 0 22 42 0 26 25 1 145 5 6 146 0 1 71 0 1 21 0 1 114 0 2 33 4 0 66 1 0 50 8 0 24 0 99 55 chain 98448 chr10 135534747 + 104600175 104602606 HERVK11-int 2540 - 306 1854 37175 125 2 0 85 1 0 189 1 0 104 17 12 91 5 6 333 21 1 30 16 5 27 22 11 29 3 0 6 19 18 33 1 0 64 2 0 13 800 66 19 77 38 38 2 1 12 3 0 44 76 41 21 2 0 21 7 0 14 5 0 51 chain 77078 chr10 135534747 + 104603821 104604899 MER11A 1151 - 5 1144 44928 162 0 1 28 1 0 34 0 1 36 18 0 22 8 15 11 25 1 145 5 6 145 0 1 79 1 0 5 0 1 12 0 1 146 4 0 60 0 4 52 8 0 18 1 100 36 1 2 15 chain 3480 chr10 135534747 + 104607956 104607997 MER66B 489 - 427 468 215671 41 chain 13910 chr10 135534747 + 104614418 104614616 AluSp 311 + 31 216 144884 80 1 0 14 12 3 5 3 0 83 chain 16210 chr10 135534747 + 104644755 104645076 L1MA4 2864 - 55 343 137716 43 3 1 22 11 5 14 64 42 7 3 0 154 chain 29794 chr10 135534747 + 104645275 104645585 AluYa5 310 - 0 310 85487 310 chain 8719 chr10 135534747 + 104647279 104647525 L1M1 2793 - 125 378 167091 40 1 0 18 23 25 47 59 66 14 19 18 25 chain 17617 chr10 135534747 + 104650827 104651099 MER50 708 - 426 696 133944 110 5 6 62 0 1 6 0 11 8 11 0 22 9 5 39 chain 3622 chr10 135534747 + 104655263 104655409 L1M4c 1769 - 365 501 213300 31 80 72 25 2 0 8 chain 26094 chr10 135534747 + 104656863 104657155 AluY 311 + 5 297 99647 38 1 0 89 0 1 164 chain 25750 chr10 135534747 + 104670346 104670750 MLT2A1 477 + 7 413 101088 26 0 5 104 8 9 18 0 4 116 35 34 60 4 2 19 5 0 9 chain 36791 chr10 135534747 + 104691457 104692367 L1MB7 1623 - 295 1011 73808 5 1 0 31 1 0 4 1 0 4 1 0 16 2 0 3 2 0 17 16 5 15 13 8 11 40 23 91 1 4 41 2 1 12 1 0 43 11 10 26 1 0 7 236 80 144 0 4 111 chain 21778 chr10 135534747 + 104708967 104709221 AluSp 311 - 47 301 121106 254 chain 56706 chr10 135534747 + 104716065 104716742 L1PA6 6164 + 5493 6156 54716 564 13 0 90 1 0 9 chain 3047 chr10 135534747 + 104744768 104744800 U2 167 - 135 167 224058 32 chain 78120 chr10 135534747 + 104766742 104767765 MER11A 1151 - 0 1151 44450 63 4 3 9 0 8 118 2 0 79 19 53 12 0 1 56 0 4 63 1 0 6 0 1 166 1 2 206 14 9 73 0 88 131 chain 2998 chr10 135534747 + 104787551 104787584 MIRb 242 - 7 40 225050 33 chain 22151 chr10 135534747 + 104794515 104794747 AluYb8 318 + 74 306 119585 232 chain 9553 chr10 135534747 + 104806100 104806221 MER85 139 + 4 139 162816 92 0 14 29 chain 20433 chr10 135534747 + 104810944 104811180 AluSc 308 + 37 273 125799 236 chain 164417 chr10 135534747 + 104887859 104890330 SVA_F 1814 + 9 1813 22757 207 1 0 611 499 0 28 1 0 25 0 1 17 2 1 49 178 14 215 1 0 4 1 0 632 chain 2078 chr10 135534747 + 104888745 104888771 SVA_F 1814 + 893 919 125725 26 chain 15317 chr10 135534747 + 104888771 104888976 SVA_F 1814 + 869 1091 77622 12 0 2 15 1 0 49 4 19 28 0 1 96 chain 11041 chr10 135534747 + 104888981 104889177 SVA_F 1814 + 855 1067 75410 25 0 1 66 0 15 105 chain 1465 chr10 135534747 + 104889299 104889325 SVA_F 1814 + 1188 1214 75410 26 chain 11911 chr10 135534747 + 104889347 104889477 SVA_F 1814 + 962 1089 130441 39 2 0 4 1 0 84 chain 120832 chr10 135534747 + 104893390 104894960 THE1B-int 1605 + 0 1600 30750 430 1 26 62 6 8 201 17 19 839 4 5 10 chain 5653 chr10 135534747 + 104895855 104895922 THE1B 368 + 299 368 188538 38 0 2 29 chain 21931 chr10 135534747 + 104898044 104898373 L1PA8 5853 - 7 332 120496 33 0 4 49 1 0 19 2 1 42 22 20 16 1 0 54 2 0 44 1 0 43 chain 22073 chr10 135534747 + 104898493 104898777 AluSq2 311 + 11 297 119911 37 9 10 75 0 1 163 chain 21727 chr10 135534747 + 104910949 104911236 AluSp 311 + 11 297 121292 21 1 0 141 5 4 28 1 2 90 chain 23513 chr10 135534747 + 104921787 104922066 AluSc 308 - 23 304 113054 11 0 2 268 chain 8142 chr10 135534747 + 104937702 104937814 L1MB5 1630 - 157 270 170280 37 0 2 42 1 0 32 chain 9793 chr10 135534747 + 104939003 104939124 MER41B 635 + 514 635 161638 121 chain 115679 chr10 135534747 + 104968393 104970065 HERVH-int 3825 + 2318 3825 32565 651 166 1 46 1 0 227 22 22 87 18 19 454 chain 28111 chr10 135534747 + 104974389 104974699 AluYa5 310 - 0 310 92604 310 chain 10957 chr10 135534747 + 104975192 104975326 MER4D1 891 - 17 152 156374 47 0 1 87 chain 23320 chr10 135534747 + 104982482 104982795 MSTA-int 1630 - 0 316 114098 34 0 3 23 11 12 43 1 0 201 chain 25946 chr10 135534747 + 104985817 104986830 Tigger1 2417 + 1592 1973 100228 116 1 2 34 6 5 154 635 0 28 1 4 38 chain 4062 chr10 135534747 + 104993416 104993471 L1MB3 1562 + 656 712 206451 39 2 3 14 chain 23497 chr10 135534747 + 105016021 105016295 AluSc 308 - 34 308 113139 274 chain 23694 chr10 135534747 + 105020475 105020758 THE1B-int 1605 + 1321 1605 112062 279 0 1 4 chain 17877 chr10 135534747 + 105020758 105021081 THE1B 368 + 0 356 133173 43 0 15 114 2 1 25 78 97 61 chain 19995 chr10 135534747 + 105068979 105069360 MSTA 426 + 0 426 127157 28 0 1 97 51 49 31 6 0 8 56 108 104 chain 3590 chr10 135534747 + 105166690 105166730 MER33 330 + 167 207 213822 40 chain 21442 chr10 135534747 + 105167067 105167322 AluY 311 + 28 285 122362 12 0 1 91 0 1 152 chain 29471 chr10 135534747 + 105181439 105181760 AluYb8 318 + 0 318 86750 132 3 0 186 chain 25449 chr10 135534747 + 105281598 105282021 LTR7Y 441 - 10 441 102461 100 0 2 85 71 87 52 12 2 103 chain 22255 chr10 135534747 + 105282092 105282382 AluSp 311 + 10 305 119103 118 8 0 51 5 18 108 chain 6099 chr10 135534747 + 105286609 105286683 L1MA5 2750 - 2551 2625 184415 74 chain 9265 chr10 135534747 + 105287550 105287681 MER41-int 2638 - 18 153 164240 79 5 9 47 chain 152191 chr10 135534747 + 105366219 105367925 SVA_D 2077 + 0 2077 24313 15 0 1 4 0 1 869 0 269 16 12 13 30 0 2 9 0 1 73 0 98 658 2 0 18 chain 29881 chr10 135534747 + 105422144 105422456 AluYb8 318 - 6 318 85163 312 chain 26024 chr10 135534747 + 105503912 105504202 AluSp 311 - 13 303 99925 290 chain 36907 chr10 135534747 + 105592226 105592660 L1PA5 6144 + 5699 6144 73648 272 15 26 147 chain 44328 chr10 135534747 + 105604623 105605526 MER41A 554 + 0 554 63789 89 6 7 65 350 0 393 chain 11327 chr10 135534747 + 105623552 105623746 MER21B 843 - 646 843 154977 66 10 11 74 24 26 20 chain 15524 chr10 135534747 + 105627656 105627853 MLT1B 390 + 193 390 139815 197 chain 17562 chr10 135534747 + 105680370 105680803 MER67A 545 + 0 360 134094 7 1 0 24 32 33 32 4 5 91 71 0 32 27 28 63 19 16 14 1 0 15 chain 27247 chr10 135534747 + 105692772 105693192 MER57B2 428 + 0 428 95441 78 4 0 217 59 71 62 chain 7762 chr10 135534747 + 105725224 105725318 L1PA7 6471 + 6376 6467 172529 83 3 0 8 chain 26571 chr10 135534747 + 105725894 105726196 AluY 311 + 0 311 97754 26 0 9 276 chain 8828 chr10 135534747 + 105748137 105748261 MER85 139 + 4 139 166504 92 3 14 29 chain 27150 chr10 135534747 + 105756144 105756452 AluYk4 311 - 0 311 95761 285 0 3 23 chain 5809 chr10 135534747 + 105817995 105818058 MER41B 635 + 481 544 187054 63 chain 27871 chr10 135534747 + 105825638 105826018 LTR71B 605 + 0 377 93453 125 25 22 76 2 1 125 1 2 26 chain 6534 chr10 135534747 + 105830079 105830153 LTR71B 605 + 531 605 180976 74 chain 22440 chr10 135534747 + 105890157 105890460 L1PA16 3655 + 3269 3568 118299 21 2 0 20 0 1 36 1 0 69 2 0 152 chain 21698 chr10 135534747 + 105898160 105898420 AluSp 311 + 9 269 121398 260 chain 4384 chr10 135534747 + 105909144 105909225 L1MC5 759 - 403 479 202145 44 16 11 21 chain 24957 chr10 135534747 + 105933966 105934330 THE1B 368 - 0 368 105022 119 46 51 30 1 0 168 chain 28851 chr10 135534747 + 105943141 105943446 AluYb8 318 - 13 318 89667 305 chain 8110 chr10 135534747 + 105957052 105957205 L1MC2 1988 - 0 147 170433 42 39 34 65 1 0 6 chain 51565 chr10 135534747 + 105959464 105960097 PABL_B 668 + 0 634 57913 245 1 0 33 1 0 16 0 1 51 1 7 6 7 0 73 0 3 199 chain 7819 chr10 135534747 + 105969767 105969904 MER2 342 - 127 262 172190 5 1 0 87 26 25 18 chain 24410 chr10 135534747 + 105984238 105984535 AluSx1 309 + 8 305 108030 111 0 1 13 1 0 172 chain 160612 chr10 135534747 + 105993759 105996119 MER41-int 2638 + 183 2633 23251 6 6 0 22 8 5 32 1 0 5 17 6 32 4 0 160 18 15 20 14 17 29 0 1 10 3 7 104 1 3 13 24 7 45 4 7 60 19 33 186 0 1 81 0 4 168 0 101 52 0 5 273 30 23 122 45 44 27 2 0 317 5 7 174 0 5 221 chain 39881 chr10 135534747 + 105996131 105996617 MER41A 554 + 0 554 69483 93 0 1 264 0 67 129 chain 42316 chr10 135534747 + 105996935 105997522 MER4A1_ 611 - 0 611 66250 13 0 1 86 0 3 75 2 0 18 3 42 71 1 0 8 17 0 244 0 1 49 chain 10047 chr10 135534747 + 105997522 105997672 MER31A 484 + 212 361 160339 45 24 23 81 chain 24970 chr10 135534747 + 106003200 106003620 MER50B 698 - 2 429 104959 38 15 19 31 0 4 68 1 0 48 25 24 74 38 39 82 chain 10004 chr10 135534747 + 106005398 106005536 LTR12C 1709 + 930 1109 160564 115 6 47 17 chain 56119 chr10 135534747 + 106008538 106009248 LTR12 884 + 5 869 55057 73 0 64 5 0 2 121 0 65 43 6 28 216 0 1 246 chain 39843 chr10 135534747 + 106011353 106011881 MER41C 542 + 0 542 69547 49 7 8 227 1 10 17 11 12 12 0 2 176 0 1 28 chain 27217 chr10 135534747 + 106029773 106030070 AluYk4 311 - 14 311 95536 297 chain 25663 chr10 135534747 + 106063130 106063547 MST-int 1221 + 71 474 101443 11 1 0 14 24 18 9 1 0 10 1 0 14 5 3 24 10 7 112 4 5 8 1 0 168 chain 37924 chr10 135534747 + 106079548 106080205 MER4D1 891 + 58 663 72243 55 16 17 88 0 2 27 3 9 14 0 2 137 73 0 47 14 17 21 15 16 32 1 2 12 0 5 102 chain 2833 chr10 135534747 + 106079891 106079923 MER4D1 891 + 413 445 228192 32 chain 4645 chr10 135534747 + 106095576 106095670 MIR 256 + 95 192 199115 42 29 32 23 chain 15743 chr10 135534747 + 106120705 106120891 MSTA 426 - 232 418 139132 186 chain 27548 chr10 135534747 + 106130034 106130391 THE1B 368 - 0 368 94510 75 1 0 101 2 0 20 1 0 117 0 15 40 chain 55954 chr10 135534747 + 106135320 106136083 MER4E 760 - 15 760 55147 194 36 18 89 1 0 75 4 6 196 13 16 126 6 1 14 0 1 9 chain 2593 chr10 135534747 + 106168065 106168101 MIRb 242 + 107 143 231771 5 1 0 5 0 1 25 chain 5241 chr10 135534747 + 106182549 106182611 MLT1H2 457 - 331 393 192615 62 chain 29345 chr10 135534747 + 106198114 106198432 AluYb8 318 - 0 318 87319 318 chain 4232 chr10 135534747 + 106212428 106212491 MER3 215 - 87 149 204136 37 5 4 21 chain 103077 chr10 135534747 + 106220644 106221943 L1PA10 4194 - 33 1325 35970 11 1 0 31 34 13 22 1 2 101 2 1 271 7 8 192 0 2 353 0 11 192 0 1 81 chain 31497 chr10 135534747 + 106221948 106222386 MLT2A1 477 + 0 472 81651 115 0 3 40 15 12 215 4 0 6 7 45 36 chain 460836 chr10 135534747 + 106222391 106227902 HERVL-int 5654 + 0 5537 8367 358 33 14 301 1 0 78 0 4 580 0 1 628 13 22 299 1 0 403 4 6 808 0 4 61 0 5 1180 0 1 73 3 4 376 0 1 9 0 1 8 4 0 36 16 5 166 0 33 72 chain 14332 chr10 135534747 + 106227905 106228075 HERVL-int 5654 - 5485 5654 143454 71 1 0 98 chain 27470 chr10 135534747 + 106228538 106228910 MLT2A1 477 - 82 477 94745 185 2 0 14 0 1 21 1 5 15 17 37 117 chain 29594 chr10 135534747 + 106248653 106248964 AluYb8 318 - 7 318 86224 311 chain 16678 chr10 135534747 + 106251022 106251362 THE1C 375 + 0 351 136469 14 2 0 30 0 9 17 17 18 21 36 41 28 5 6 44 4 6 13 11 5 13 0 1 85 chain 9008 chr10 135534747 + 106279672 106279819 L1MA2 4263 + 3975 4114 165549 83 15 8 39 1 0 9 chain 544544 chr10 135534747 + 106288100 106294134 L1PA3long 6157 - 5 6157 2135 893 3 0 2116 0 5 2229 0 128 70 14 0 43 0 1 512 1 2 153 chain 22912 chr10 135534747 + 106318512 106318790 AluY 311 + 4 283 116047 128 1 2 149 chain 19732 chr10 135534747 + 106343008 106343370 THE1B 368 + 0 368 128007 111 5 6 60 71 76 49 17 17 49 chain 284762 chr10 135534747 + 106368912 106372611 MER61-int 3695 + 0 3686 14367 30 4 0 16 1 0 14 0 1 153 0 11 185 4 5 122 10 9 96 2 0 204 9 7 239 3 2 73 0 1 79 1 2 183 1 0 191 0 5 238 0 1 58 0 1 207 1 0 129 0 1 351 7 5 146 1 0 98 1 0 37 1 0 131 13 0 134 2 0 189 8 6 45 6 5 162 0 1 4 1 0 109 chain 4655 chr10 135534747 + 106384050 106384109 L1MA7 2200 + 1888 1947 199012 59 chain 33796 chr10 135534747 + 106413860 106414312 L1MA2 4263 - 152 591 77942 6 1 0 47 7 0 93 11 9 150 3 0 134 chain 4130 chr10 135534747 + 106416776 106416837 MLT1H 522 + 125 188 205499 29 6 8 26 chain 4461 chr10 135534747 + 106447841 106447898 MER53 195 + 138 195 201219 57 chain 18939 chr10 135534747 + 106463008 106463229 L1PA8A 6298 - 487 708 130261 221 chain 20043 chr10 135534747 + 106463229 106463467 L1PA8A 6298 + 6050 6290 127001 115 0 2 123 chain 4376 chr10 135534747 + 106477538 106477594 MSTD 398 - 1 58 202238 16 0 1 40 chain 543920 chr10 135534747 + 106479747 106485881 L1PA4 6152 - 12 6151 2225 476 0 1 3256 0 1 15 0 3 2387 chain 133971 chr10 135534747 + 106496541 106498044 L1PA3long 6157 - 0 1524 27215 149 0 1 68 0 1 113 0 1 532 0 4 490 0 14 151 chain 3515 chr10 135534747 + 106522835 106523002 MER5A 189 + 0 189 215142 27 88 109 25 13 14 14 chain 19027 chr10 135534747 + 106544661 106544872 SVA_F 1814 - 461 669 130043 166 1 0 17 2 0 25 chain 45943 chr10 135534747 + 106544872 106545359 SVA_F 1814 + 1327 1814 62091 487 chain 78473 chr10 135534747 + 106558447 106559439 L1PA7 6471 + 5449 6447 44284 5 0 1 166 0 3 114 1 7 15 2 0 10 4 3 12 7 3 68 0 3 501 1 9 7 8 0 71 chain 25904 chr10 135534747 + 106589656 106590019 L1PA8 5853 - 0 356 100415 93 1 0 19 2 1 31 10 9 21 1 0 71 2 0 44 1 0 67 chain 3049 chr10 135534747 + 106614852 106615258 L1MD2 1676 - 1215 1629 224007 5 0 1 32 1 0 3 2 0 7 334 344 22 chain 122220 chr10 135534747 + 106618997 106620337 L1PA3long 6157 + 4817 6157 30304 1340 chain 23090 chr10 135534747 + 106684672 106684998 L1PA8 5853 - 1 329 115197 92 1 0 19 4 3 42 1 8 9 2 1 53 0 1 16 3 1 45 1 0 38 chain 40960 chr10 135534747 + 106700002 106700479 L1PA5 6144 - 0 476 67961 246 8 7 223 chain 213389 chr10 135534747 + 106732469 106734830 L1PA3long 6157 - 2017 4379 18265 1460 0 1 901 chain 180382 chr10 135534747 + 106734830 106736827 L1PA3long 6157 + 4157 6157 20937 964 0 1 658 0 1 36 1 2 338 chain 4722 chr10 135534747 + 106803025 106803077 MER5A1 166 + 30 82 198267 52 chain 70059 chr10 135534747 + 106807678 106808449 L1PA4 6152 + 5377 6152 48365 521 1 0 243 0 5 6 chain 2897 chr10 135534747 + 106897123 106897156 L1MB5 1630 + 1514 1547 227082 33 chain 45437 chr10 135534747 + 106993166 106993705 L1PA7 6471 - 1 537 62557 162 3 0 374 chain 19792 chr10 135534747 + 107014994 107015217 L1PA4 6152 + 5905 6128 127846 223 chain 146235 chr10 135534747 + 107055344 107057023 L1PA5 6144 - 12 1696 25126 148 0 1 682 0 4 109 0 1 565 1 0 174 chain 11808 chr10 135534747 + 107062723 107062873 L1PA16 3655 - 83 233 152993 150 chain 85308 chr10 135534747 + 107071019 107071940 L1PA2 6032 + 5107 6028 41413 921 chain 462075 chr10 135534747 + 107078370 107083614 L1PA5 6144 - 0 5255 8326 3485 1 2 1089 0 7 409 0 3 260 chain 20483 chr10 135534747 + 107109611 107109853 AluY 311 + 63 306 125669 69 0 1 173 chain 5731 chr10 135534747 + 107112358 107112425 LTR32 486 + 406 473 187827 67 chain 7444 chr10 135534747 + 107117506 107117606 MLT2C2 476 - 369 467 174489 16 2 0 82 chain 13649 chr10 135534747 + 107119932 107120101 MLT2A2 560 + 0 169 145788 169 chain 40556 chr10 135534747 + 107133088 107133534 L1P1 4361 + 2043 2489 68500 446 chain 46515 chr10 135534747 + 107133927 107134479 L1PA7 6471 - 7 559 61587 552 chain 23156 chr10 135534747 + 107134479 107134749 L1PA7 6471 + 5674 5943 114867 190 1 0 79 chain 568284 chr10 135534747 + 107137104 107143135 L1HS 6032 - 0 6032 15 5959 0 1 72 chain 27480 chr10 135534747 + 107158477 107158784 L1PA3long 6157 + 5849 6155 94717 245 1 0 61 chain 29508 chr10 135534747 + 107165444 107165975 L1PA16 3655 - 73 590 86607 4 1 0 167 9 10 100 115 105 72 4 0 59 chain 30068 chr10 135534747 + 107181496 107181872 MLT2A1 477 - 92 475 84610 212 1 5 11 0 1 13 0 1 121 0 1 18 chain 435649 chr10 135534747 + 107181874 107187613 HERVL-int 5654 - 0 5653 9178 44 18 1 63 7 14 101 0 1 201 6 4 127 5 6 154 0 1 184 0 1 135 8 9 896 0 1 172 0 1 189 4 12 48 0 1 179 1 5 99 0 7 26 0 1 22 0 237 1267 0 1 325 93 25 525 274 0 52 1 0 419 1 4 93 chain 6347 chr10 135534747 + 107186159 107186235 HERVL-int 5654 - 4464 4540 182411 76 chain 528948 chr10 135534747 + 107234592 107240933 L1PA4 6152 - 17 6150 4307 907 1 2 1259 214 21 23 0 1 6 0 1 244 0 5 489 0 1 736 0 4 123 1 0 96 2 0 58 2 0 449 2 0 466 1 0 410 17 0 73 4 0 185 1 0 196 12 14 364 chain 48328 chr10 135534747 + 107242774 107243780 L1PA16 3655 - 420 1138 60221 34 2 1 53 0 23 200 323 6 16 1 0 5 5 14 195 22 21 150 chain 6248 chr10 135534747 + 107268267 107269048 LTR48 738 - 46 738 183178 15 2 1 23 655 566 68 2 3 16 chain 38433 chr10 135534747 + 107293230 107293729 L1PA8 5853 - 0 494 71534 93 1 0 19 6 5 40 0 2 6 2 1 8 5 4 67 3 1 43 1 0 205 chain 7877 chr10 135534747 + 107294433 107294523 U6 107 + 17 107 171826 90 chain 19395 chr10 135534747 + 107294523 107294750 L1PA7 6471 + 6243 6470 128960 227 chain 538082 chr10 135534747 + 107309967 107315989 L1PA3long 6157 + 4 6156 3139 149 1 2 586 0 1 26 8 136 520 0 2 2017 0 1 2007 3 1 538 1 0 166 chain 12333 chr10 135534747 + 107329194 107329361 L1PA15 4387 + 3007 3168 150884 7 3 0 3 3 0 151 chain 17300 chr10 135534747 + 107367472 107367677 AluY 311 + 86 288 134785 45 3 0 157 chain 54469 chr10 135534747 + 107392441 107393161 L1PA10 4194 - 31 749 56052 13 1 0 31 18 15 198 15 18 326 1 0 117 chain 11566 chr10 135534747 + 107403087 107403225 MER41A 554 + 416 554 154042 138 chain 5589 chr10 135534747 + 107415145 107415217 MSTA 426 + 355 426 189179 43 1 0 28 chain 19523 chr10 135534747 + 107418266 107418477 L1PA3long 6157 - 0 211 128586 211 chain 3927 chr10 135534747 + 107428974 107429021 MER57A-int 1588 - 1278 1325 208465 47 chain 41616 chr10 135534747 + 107434197 107434746 MER41A 554 - 0 554 67136 124 1 2 65 5 6 160 1 4 193 chain 24189 chr10 135534747 + 107436371 107436936 L1PA15 4387 - 21 560 109282 11 4 3 20 38 31 28 21 18 38 1 0 9 5 3 17 5 4 41 13 12 27 1 0 6 5 15 21 20 1 20 0 1 5 20 20 43 0 2 37 1 0 43 8 6 57 chain 81007 chr10 135534747 + 107436942 107437994 MER11C 1089 + 0 1063 43191 242 4 13 30 1 0 28 0 4 69 16 15 131 13 8 6 0 4 140 0 4 5 1 0 38 0 1 127 0 1 77 10 6 114 chain 13404 chr10 135534747 + 107441003 107441171 MER41A 554 + 386 554 146692 14 0 1 137 1 0 16 chain 7360 chr10 135534747 + 107487283 107487365 L1PA2 6032 + 5946 6028 175032 82 chain 240062 chr10 135534747 + 107487762 107491014 HERVH-int 3825 + 0 3825 16773 333 2 1 76 11 10 38 36 17 14 7 4 22 0 265 454 43 13 182 9 0 16 29 10 236 0 27 144 19 5 168 1 0 55 0 5 34 0 1 381 1 0 45 2 9 254 0 367 57 33 32 550 chain 375725 chr10 135534747 + 107495475 107499813 L1P1 4361 + 2 4328 10894 520 4 0 52 1 0 125 7 0 3253 0 1 59 0 1 137 1 0 155 1 0 23 chain 50677 chr10 135534747 + 107500000 107500553 L1PA3long 6157 + 4529 5078 58517 536 4 0 13 chain 97832 chr10 135534747 + 107500553 107501631 L1PA3long 6157 + 5079 6157 37325 1078 chain 5631 chr10 135534747 + 107506870 107506959 L1MB1 2102 - 95 183 188753 41 6 7 19 2 0 21 chain 5960 chr10 135534747 + 107527904 107527970 L1PA6 6164 + 6090 6156 185595 66 chain 565696 chr10 135534747 + 107535278 107541309 L1HS 6032 - 0 6032 176 2899 0 1 3132 chain 32473 chr10 135534747 + 107559698 107560063 L1PA5 6144 + 5768 6135 80074 195 1 3 169 chain 8662 chr10 135534747 + 107560806 107561129 L1MB3 1562 - 18 319 167411 21 1 0 5 122 100 45 0 2 14 63 62 52 chain 91239 chr10 135534747 + 107570500 107571553 L1PA5 6144 - 0 1055 39218 113 1 0 37 0 5 7 5 0 581 2 0 98 2 6 63 0 1 144 chain 19924 chr10 135534747 + 107579525 107579798 AluYf4 310 + 0 291 127387 127 10 0 8 0 13 14 0 14 29 5 6 80 chain 21685 chr10 135534747 + 107595900 107596145 L1PA6 6164 + 5916 6161 121448 245 chain 273553 chr10 135534747 + 107609119 107612405 L1PA6 6164 + 0 6162 14996 445 0 1 117 0 1 224 1 18 628 0 5 13 1 0 5 0 2850 58 0 4 309 1 2 1138 4 1 195 1 2 146 chain 2819 chr10 135534747 + 107614458 107614492 MIR 256 - 117 151 228478 34 chain 35084 chr10 135534747 + 107619460 107619882 MLT2A1 477 + 0 423 76072 168 5 2 9 0 1 24 0 1 178 0 2 38 chain 54777 chr10 135534747 + 107649486 107650162 L1PA8 5853 - 0 676 55857 14 0 5 73 2 1 16 1 0 44 0 1 6 3 1 12 1 0 69 3 1 48 1 0 281 0 2 102 chain 124429 chr10 135534747 + 107650504 107651901 L1PA5 6144 + 4734 6130 29561 56 1 0 1340 chain 285542 chr10 135534747 + 107653317 107657024 L1P3 4156 + 424 4139 14317 45 1 2 83 2 0 110 12 15 88 0 1 152 16 0 235 0 2 111 8 4 62 0 3 46 7 10 99 0 3 103 0 3 149 1 0 116 10 16 239 0 1 450 2 0 7 0 2 47 0 2 8 0 2 10 11 7 46 0 4 71 1 0 136 0 1 9 0 1 124 8 6 491 0 4 58 0 1 498 2 0 7 2 1 24 chain 28090 chr10 135534747 + 107677557 107677869 AluYa5 310 - 2 310 92684 32 2 1 149 3 0 126 chain 12692 chr10 135534747 + 107691121 107691406 L1PB1 5432 + 5159 5422 149478 9 2 0 51 5 4 13 1 0 45 1 0 14 1 0 5 2 0 12 26 15 5 1 0 14 2 0 15 1 0 9 1 0 13 25 27 12 chain 20773 chr10 135534747 + 107729738 107730091 THE1D 372 - 0 372 124705 24 16 15 31 0 1 61 45 54 111 4 14 61 chain 20015 chr10 135534747 + 107774231 107774508 THE1C 375 - 93 375 127099 51 0 5 31 8 10 7 1 0 60 1 0 118 chain 32193 chr10 135534747 + 107776510 107776947 LTR7 482 - 13 482 80532 36 13 14 138 0 32 24 0 1 109 16 14 101 chain 257399 chr10 135534747 + 107779079 107782401 HERVH-int 3825 - 0 3823 15855 342 0 2 143 8 218 133 0 3 49 0 11 295 0 1 304 9 5 126 2 0 183 0 4 81 6 5 204 4 31 215 1 0 38 10 1 202 15 0 75 0 2 65 16 17 159 2 9 123 1 0 23 5 0 13 0 268 95 14 16 30 2 1 282 0 2 47 chain 32549 chr10 135534747 + 107782413 107782856 LTR7 482 - 8 482 79943 41 17 18 119 0 31 40 0 1 109 16 14 101 chain 4100 chr10 135534747 + 107790185 107790236 MADE1 96 + 46 96 205942 15 1 0 35 chain 32435 chr10 135534747 + 107830081 107830485 L1PA10 4194 - 82 487 80141 30 1 0 66 0 1 174 0 1 133 chain 83340 chr10 135534747 + 107862567 107863642 L1PA8 5853 - 0 1070 42186 25 3 0 68 1 0 19 2 1 52 2 1 10 1 0 69 2 0 44 1 0 176 3 5 305 0 1 66 0 2 27 7 0 70 0 7 122 chain 289124 chr10 135534747 + 107875121 107879109 L1PA10 4194 + 242 4161 14075 8 1 0 21 2 0 15 1 0 8 55 30 11 2 0 18 1 0 10 1 0 7 1 0 12 4 0 8 6 0 6 0 2 5 1 0 79 4 2 221 4 5 21 7 9 132 3 0 134 0 2 152 1 0 230 2 3 78 0 1 174 0 4 43 5 6 67 1 0 112 0 1 48 1 0 95 13 12 31 8 0 91 0 1 62 3 7 80 0 1 221 4 3 4 0 1 81 6 7 37 2 0 10 7 12 138 35 0 155 1 3 386 5 6 94 10 13 168 0 2 434 2 0 22 0 1 11 3 0 34 2 1 10 chain 4756 chr10 135534747 + 107900728 107900803 MLT1A0 366 + 30 105 197845 23 0 1 4 5 4 43 chain 23711 chr10 135534747 + 107962060 107962415 THE1A 353 + 6 353 111972 97 39 38 44 3 0 102 4 0 66 chain 281043 chr10 135534747 + 107981019 107984149 L1PA4 6152 + 3011 6146 14581 1405 0 1 759 0 1 240 0 1 189 0 1 400 0 1 137 chain 17833 chr10 135534747 + 108007847 108008082 MER30 238 + 0 238 133295 119 9 12 107 chain 49029 chr10 135534747 + 108017001 108017602 L1P1 4361 + 32 632 59726 129 0 6 287 6 0 120 1 0 58 chain 6524 chr10 135534747 + 108017610 108017682 L1PA4 6152 + 4279 4351 181058 72 chain 86071 chr10 135534747 + 108017682 108018631 L1PA4 6152 + 4355 5304 41131 949 chain 60939 chr10 135534747 + 108018631 108019320 L1PA4 6152 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L1PA10 4194 - 52 137 180045 25 3 0 60 chain 32512 chr10 135534747 + 108101717 108102127 LTR46 455 + 0 408 80003 188 3 1 41 0 1 77 1 0 100 chain 43702 chr10 135534747 + 108130241 108130808 LTR19B 566 + 0 566 64564 474 8 7 34 0 1 15 1 0 35 chain 12512 chr10 135534747 + 108148916 108149070 MER2 342 + 120 274 150197 154 chain 6111 chr10 135534747 + 108161487 108161556 L1MA2 4263 - 214 283 184332 69 chain 5836 chr10 135534747 + 108172841 108172938 MER1B 344 + 236 339 186803 31 14 20 52 chain 6343 chr10 135534747 + 108176483 108176596 L1PB1 5432 + 1509 1609 182441 43 27 14 43 chain 166947 chr10 135534747 + 108180319 108182234 L1PA4 6152 - 9 1933 22401 245 0 1 451 3 1 162 0 1 4 3 13 517 0 1 260 6 4 264 chain 4768 chr10 135534747 + 108202815 108202927 L1MA1 4479 + 4087 4186 197715 20 2 0 35 1 0 9 26 17 4 1 0 14 chain 19290 chr10 135534747 + 108207475 108207752 AluSc8 310 + 27 309 129267 78 36 40 116 0 1 47 chain 88672 chr10 135534747 + 108218867 108219873 L1PA5 6144 + 5138 6144 40120 1006 chain 495256 chr10 135534747 + 108226992 108233062 L1PA6 6164 + 0 6156 7111 449 21 0 120 1 0 218 0 17 90 0 13 30 4 13 116 1 2 31 0 24 730 0 5 262 0 1 4 0 7 56 0 2 84 0 2 58 0 1 441 0 1 77 0 1 334 0 1 101 12 28 311 0 1 95 0 1 639 0 4 279 3 0 659 0 1 209 6 7 180 0 2 449 chain 45863 chr10 135534747 + 108252571 108253203 MER41B 635 - 0 635 62165 69 12 17 374 8 6 40 11 12 24 1 0 93 chain 42028 chr10 135534747 + 108310245 108310795 MLT2A2 560 - 0 560 66589 99 4 3 45 3 14 399 chain 3127 chr10 135534747 + 108317753 108317790 MER63A 208 + 88 125 222411 37 chain 25362 chr10 135534747 + 108366414 108366781 THE1C 375 + 0 375 102876 128 7 11 41 15 16 113 1 5 36 1 0 25 chain 27521 chr10 135534747 + 108371962 108372482 LTR9B 643 - 84 524 94597 88 0 1 23 114 23 16 1 11 23 0 1 29 13 10 125 7 8 67 1 2 13 chain 22216 chr10 135534747 + 108396176 108396508 THE1D 372 - 12 372 119281 88 1 0 24 28 64 39 0 1 87 11 3 54 chain 2981 chr10 135534747 + 108426628 108426680 MLT2B4 540 + 479 529 225437 13 8 6 31 chain 61304 chr10 135534747 + 108478075 108478830 LTR12 884 - 0 884 52206 206 2 109 169 0 22 378 chain 31163 chr10 135534747 + 108550033 108550469 LOR1b 457 - 18 457 82231 58 1 0 180 6 5 48 3 0 72 2 0 34 5 15 27 chain 46883 chr10 135534747 + 108558054 108558585 L1PA5 6144 - 6 538 61322 150 0 1 381 chain 91369 chr10 135534747 + 108558592 108559614 L1PA5 6144 + 4587 5609 39171 1022 chain 2940 chr10 135534747 + 108587595 108587631 MER3 215 - 51 87 226327 36 chain 8889 chr10 135534747 + 108601260 108601394 Tigger1 2417 + 2251 2386 166191 4 1 0 79 7 9 43 chain 558205 chr10 135534747 + 108604341 108610368 L1PA2 6032 - 5 6030 482 8 2 0 6017 chain 12550 chr10 135534747 + 108641937 108642139 MER30 238 - 8 238 150042 31 3 0 74 5 18 61 14 32 14 chain 21943 chr10 135534747 + 108666171 108666479 THE1A 353 - 50 353 120447 53 21 17 123 1 0 110 chain 125961 chr10 135534747 + 108686883 108688416 LTR12C 1709 - 0 1709 29111 84 5 4 104 5 4 191 1 0 50 0 2 9 0 2 31 0 4 106 2 0 8 1 0 135 0 162 341 6 8 164 0 9 30 0 1 260 chain 7102 chr10 135534747 + 108715462 108715575 AluSp 311 + 0 109 176740 44 18 14 51 chain 7866 chr10 135534747 + 108729779 108729868 5S 121 + 1 90 171896 89 chain 72139 chr10 135534747 + 108735990 108737246 L1PA8 5853 - 10 955 47411 81 321 2 18 1 0 54 8 7 73 2 0 25 0 4 15 1 0 247 0 2 9 1 0 224 0 5 68 0 2 93 0 1 15 chain 25990 chr10 135534747 + 108766295 108766587 AluY 311 + 2 295 100050 130 0 1 162 chain 11705 chr10 135534747 + 108798172 108798300 L1PA4 6152 + 6015 6143 153444 128 chain 22627 chr10 135534747 + 108798821 108799108 AluY 311 + 16 303 117439 102 0 1 15 0 1 124 0 1 8 0 2 15 5 0 18 chain 40968 chr10 135534747 + 108808730 108809179 L1PA3long 6157 + 5703 6149 67959 232 3 0 214 chain 22240 chr10 135534747 + 108846516 108846789 AluY 311 + 11 286 119167 118 1 2 120 0 1 34 chain 42681 chr10 135534747 + 108865077 108865622 MLT2A2 560 - 0 560 65796 6 0 4 47 0 1 85 7 18 219 1 0 180 chain 26853 chr10 135534747 + 108910363 108910724 THE1C 375 + 0 363 96797 135 0 4 46 12 11 153 1 0 14 chain 17874 chr10 135534747 + 108910753 108911112 THE1C-int 1605 + 18 322 133183 103 9 0 3 100 0 24 7 61 113 chain 25761 chr10 135534747 + 108911112 108911461 THE1A 353 - 0 353 101036 127 9 14 102 3 2 108 chain 14474 chr10 135534747 + 108957384 108957729 MSTA 426 - 25 412 142968 52 39 59 47 39 39 21 3 0 12 20 0 10 17 61 78 0 1 7 chain 17557 chr10 135534747 + 108981424 108981768 THE1D 372 - 15 363 134108 17 1 0 20 38 37 59 13 14 13 38 44 49 1 0 95 chain 18532 chr10 135534747 + 108982974 108983328 THE1B 368 - 12 368 131422 31 1 0 17 0 1 50 89 90 50 11 12 105 chain 119857 chr10 135534747 + 108983328 108984965 THE1B-int 1605 - 0 1605 31102 91 7 1 260 68 10 426 0 1 266 8 12 69 12 37 158 0 1 248 0 1 24 chain 129075 chr10 135534747 + 108988653 108990122 L1PA5 6144 + 4670 6140 28297 1300 14 15 155 chain 60406 chr10 135534747 + 109008516 109009306 MER4E1 777 + 0 777 52630 133 5 0 112 1 0 5 0 1 274 30 20 223 0 2 7 chain 256211 chr10 135534747 + 109016180 109020049 L1PB1 5432 + 1612 5423 15923 98 11 7 361 3 4 197 4 6 112 2 0 24 7 5 49 10 11 6 1 0 126 6 41 26 0 1 4 5 4 131 0 1 4 0 1 6 17 16 38 0 3 112 0 1 15 5 0 139 8 4 69 1 0 30 9 12 30 11 16 264 12 16 27 0 1 87 0 1 17 15 12 465 1 0 5 0 1 228 12 0 162 0 13 5 2 0 77 0 2 100 0 5 7 7 0 286 40 0 11 11 0 23 1 0 5 3 2 10 30 24 42 22 16 45 102 86 7 9 0 18 1 0 12 1 0 10 1 0 9 chain 4896 chr10 135534747 + 109020062 109020117 Tigger1 2417 - 105 160 196310 55 chain 22162 chr10 135534747 + 109022144 109022427 AluY 311 + 15 299 119532 119 8 9 156 chain 17388 chr10 135534747 + 109034834 109035168 MER51B 395 - 7 384 134546 79 1 13 28 0 2 9 51 54 50 9 14 33 0 6 34 11 26 29 chain 56159 chr10 135534747 + 109040853 109041534 L1PA7 6471 - 2211 2891 55000 148 15 14 518 chain 175893 chr10 135534747 + 109041534 109043696 L1PA7 6471 + 4281 6442 21362 386 0 4 87 4 0 765 5 6 69 0 4 19 1 0 79 0 2 308 0 2 32 0 1 159 9 1 13 10 8 81 2 0 5 0 2 41 1 0 15 3 4 68 chain 61865 chr10 135534747 + 109086352 109087034 L1PA3long 6157 + 5472 6156 51967 8 0 2 674 chain 9082 chr10 135534747 + 109092696 109092799 L1PA2 6032 - 3 106 165152 103 chain 3011 chr10 135534747 + 109214622 109214713 MLT1H 522 - 315 420 224801 17 19 33 17 12 13 21 1 0 4 chain 376141 chr10 135534747 + 109223294 109227780 L1PA2 6032 + 0 6032 10881 26 0 1 36 10 0 420 1 2 202 1 0 80 6 1885 56 324 0 1244 0 1 1743 1 0 336 chain 29858 chr10 135534747 + 109224142 109224456 AluYb8 318 + 0 314 85253 314 chain 29850 chr10 135534747 + 109235254 109235567 AluYb8 318 - 5 318 85283 313 chain 28955 chr10 135534747 + 109262833 109263187 THE1B 368 - 1 368 89194 175 2 0 133 0 15 44 chain 75880 chr10 135534747 + 109263194 109264204 THE1B-int 1605 - 7 1204 45559 46 0 52 34 0 13 180 1 0 310 1 2 143 33 130 233 1 26 28 chain 32775 chr10 135534747 + 109265486 109265838 L1HS 6032 + 5679 6031 79572 352 chain 33593 chr10 135534747 + 109288529 109288897 L1PA2 6032 + 5664 6032 78252 368 chain 4073 chr10 135534747 + 109304232 109304286 Tigger7 736 - 301 352 206290 5 3 0 46 chain 144401 chr10 135534747 + 109309676 109311376 L1PA6 6164 + 4441 6162 25413 544 0 7 320 0 4 639 0 3 35 11 18 151 chain 79452 chr10 135534747 + 109315599 109316755 L1PA8 5853 - 0 1144 43848 91 7 6 13 1 0 41 31 25 30 8 8 30 2 0 45 1 0 41 1 0 4 4 5 28 11 15 54 3 1 368 1 0 39 2 0 300 chain 30826 chr10 135534747 + 109331098 109331728 L1PB1 5432 + 4904 5417 82819 199 90 4 7 1 0 20 1 0 11 2 1 10 6 2 9 2 0 53 8 7 9 1 0 41 33 20 10 1 2 18 11 8 11 2 0 24 1 0 21 1 0 13 1 0 13 chain 48670 chr10 135534747 + 109345897 109346489 LTR10C 591 + 0 591 59981 263 2 0 153 22 23 152 chain 26050 chr10 135534747 + 109360590 109360874 AluYa5 310 + 33 310 99825 93 7 0 184 chain 17929 chr10 135534747 + 109388254 109388493 AluY 311 + 49 296 133033 69 1 0 12 1 2 118 5 13 33 chain 4423 chr10 135534747 + 109408274 109408327 LTR40b 463 - 0 53 201665 53 chain 23635 chr10 135534747 + 109416061 109416337 AluY 311 + 11 292 112387 119 0 5 157 chain 27922 chr10 135534747 + 109420224 109420596 MLT2A1 477 + 0 385 93274 128 0 1 40 4 1 25 5 2 88 0 18 82 chain 218032 chr10 135534747 + 109420684 109423513 HERVL-int 5654 + 0 5654 18003 415 9 8 177 1 0 143 0 1 107 7 8 126 34 0 100 3 0 518 0 4 767 12 2865 184 0 5 226 chain 9914 chr10 135534747 + 109423513 109423635 MLT2A1 477 + 0 127 160999 33 0 5 89 chain 15102 chr10 135534747 + 109432615 109432958 LTR1B 797 + 436 797 141024 133 13 15 51 124 140 22 chain 24813 chr10 135534747 + 109482586 109482932 THE1B 368 + 0 342 105822 8 0 1 5 2 0 23 0 5 126 1 0 34 13 7 60 1 0 73 chain 18594 chr10 135534747 + 109545902 109546189 THE1B 368 + 0 290 131246 169 1 0 11 27 34 18 1 0 10 2 0 48 chain 66120 chr10 135534747 + 109560576 109561312 SVA_D 2077 + 1172 2075 50042 58 0 176 660 9 0 9 chain 52821 chr10 135534747 + 109584130 109584890 MER4E1 777 - 8 770 57123 14 3 19 4 0 1 183 7 0 4 2 0 83 3 1 99 5 3 173 1 0 27 25 20 18 0 3 91 6 7 12 chain 6458 chr10 135534747 + 109609695 109609769 L1PA8A 6298 - 2469 2543 180888 74 chain 191676 chr10 135534747 + 109609769 109612210 L1PA8A 6298 + 3838 6290 19896 42 1 0 83 0 1 49 0 1 142 8 24 135 1 0 12 0 1 99 7 0 115 2 0 283 1 0 70 0 1 71 0 2 178 0 5 5 1 3 8 7 0 341 1 0 59 0 2 175 1 0 459 0 1 85 chain 21282 chr10 135534747 + 109631008 109631314 AluY 311 + 0 311 122922 122 1 0 10 40 46 133 chain 37250 chr10 135534747 + 109635790 109636277 L1PA10 4194 + 3671 4161 73168 30 5 8 238 0 4 165 3 0 34 1 0 11 chain 38297 chr10 135534747 + 109698171 109699182 L1PB1 5432 - 2 725 71713 4 1 0 8 1 0 14 1 0 12 4 3 19 1 0 24 2 0 14 1 0 5 3 1 29 20 8 9 2 1 39 4 3 18 1 0 39 31 24 10 10 8 23 5 0 12 292 42 156 0 1 17 0 1 76 11 13 85 3 0 5 chain 28066 chr10 135534747 + 109707723 109708086 MLT2A1 477 - 112 475 92768 87 0 1 73 0 1 20 0 1 8 9 6 166 chain 102597 chr10 135534747 + 109710226 109711848 LTR12C 1709 + 69 1709 36106 21 12 15 107 5 6 48 1 2 9 4 0 9 9 13 39 0 43 33 7 8 41 32 29 116 8 9 86 41 0 134 1 0 126 23 23 31 5 46 23 26 32 88 24 0 9 23 16 78 1 0 53 1 0 256 8 7 84 chain 2709 chr10 135534747 + 109710813 109710854 LTR12C 1709 + 822 862 89263 15 1 0 25 chain 29021 chr10 135534747 + 109739825 109740135 AluYa5 310 - 0 310 88902 310 chain 2741 chr10 135534747 + 109776972 109777008 L1M4c 1769 + 1248 1282 229611 28 2 0 6 chain 167239 chr10 135534747 + 109781711 109783604 L1PA3long 6157 + 4260 6157 22362 70 0 1 240 0 1 735 1 0 370 0 3 477 chain 264258 chr10 135534747 + 109783610 109787258 L1PA7 6471 + 3145 6469 15470 347 7 5 212 0 1 83 0 1 42 16 1 163 1 0 8 0 1 24 0 1 171 0 1 148 8 9 512 0 1 521 4 6 195 0 2 9 8 5 260 314 0 366 0 1 72 0 1 145 2 0 10 chain 6099 chr10 135534747 + 109793270 109793337 L1PA7 6471 - 467 534 184416 67 chain 40297 chr10 135534747 + 109793368 109793843 L1PA7 6471 + 5977 6452 68882 475 chain 128063 chr10 135534747 + 109825860 109827264 L1PA2 6032 - 4 1408 28553 1404 chain 49321 chr10 135534747 + 109827264 109827800 L1PA2 6032 + 4088 4624 59504 536 chain 558252 chr10 135534747 + 109873701 109879764 L1PA2 6032 + 2 6032 478 2421 34 0 1529 0 1 2079 chain 12159 chr10 135534747 + 109918265 109918405 L1PA7 6471 - 1 141 151574 140 chain 4062 chr10 135534747 + 109940940 109941043 LTR43B 570 - 185 289 206466 25 42 43 36 chain 19089 chr10 135534747 + 109951301 109951666 THE1B 368 + 0 368 129849 64 1 3 40 14 16 22 4 0 23 34 27 5 1 0 10 0 4 10 11 19 63 7 6 56 chain 75901 chr10 135534747 + 109979556 109980517 L1PA7 6471 + 5501 6460 45540 122 3 0 61 13 14 268 1 0 318 0 1 22 18 18 135 chain 62695 chr10 135534747 + 110034960 110035691 L1P1 4361 + 1208 1940 51595 29 1 0 316 0 2 385 chain 31268 chr10 135534747 + 110058805 110059211 LTR3B 427 - 0 401 82048 59 0 5 29 5 1 33 6 0 274 chain 20313 chr10 135534747 + 110065603 110065863 AluY 311 + 40 304 126194 74 0 1 10 1 2 148 0 2 27 chain 559739 chr10 135534747 + 110069888 110075897 L1HS 6032 - 0 6011 370 4995 0 3 660 1 0 353 chain 20366 chr10 135534747 + 110092615 110092865 L1PA10 4194 - 99 354 126009 15 0 5 235 chain 64046 chr10 135534747 + 110109160 110109868 L1PA3long 6157 - 8 716 50988 708 chain 13801 chr10 135534747 + 110109868 110110017 L1PA3long 6157 + 5279 5428 145267 149 chain 174568 chr10 135534747 + 110131107 110133291 L1PA7 6471 - 2 2215 21530 852 0 3 8 0 4 254 21 21 331 14 11 30 2 0 69 0 14 50 0 4 62 0 1 77 0 4 53 1 0 100 0 2 47 0 2 110 0 1 103 chain 48263 chr10 135534747 + 110140691 110141222 L1PA3long 6157 - 1 532 60271 531 chain 72892 chr10 135534747 + 110141226 110142017 L1PA3long 6157 + 4881 5672 47074 791 chain 22701 chr10 135534747 + 110174259 110174533 L1PA2 6032 + 5761 6030 117069 120 0 1 40 8 4 95 2 0 9 chain 29771 chr10 135534747 + 110189393 110189833 MLT2A1 477 - 0 477 85574 20 1 0 33 7 39 149 5 4 20 3 5 6 2 0 27 1 5 28 1 2 89 0 2 48 chain 200446 chr10 135534747 + 110189833 110192300 HERVL-int 5654 - 0 2592 19178 60 5 0 26 9 5 128 0 1 209 1 0 608 8 5 327 0 1 56 0 1 8 0 126 460 1 16 509 18 12 34 chain 99169 chr10 135534747 + 110201399 110202523 L1PA4 6152 + 5027 6152 36979 675 1 2 448 chain 61521 chr10 135534747 + 110217225 110217897 L1PA3long 6157 + 5485 6157 52107 672 chain 126860 chr10 135534747 + 110244071 110245918 L1PB1 5432 - 809 4434 28847 176 39 2 65 9 11 37 5 7 327 4 6 36 5 1818 39 0 1 160 7 10 218 3 0 279 27 42 9 23 0 24 1 2 16 17 18 22 0 1 239 0 1 4 1 0 55 chain 25252 chr10 135534747 + 110248397 110248684 L1PA4 6152 - 1 288 103468 287 chain 18051 chr10 135534747 + 110248684 110248884 L1PA4 6152 + 5660 5860 132730 200 chain 528462 chr10 135534747 + 110264168 110270282 L1PA5 6144 + 3 6144 4356 918 0 4 224 0 3 1061 0 1 156 0 2 152 0 6 757 0 1 595 0 2 310 0 2 807 2 1 286 0 4 59 0 1 475 0 1 139 1 2 172 chain 161792 chr10 135534747 + 110289075 110291221 L1PA8 5853 + 3688 5847 23092 82 0 1 5 4 3 277 0 8 95 0 3 21 0 2 32 1 4 116 1 0 243 0 1 15 0 1 261 17 19 118 5 1 13 15 17 152 6 8 372 5 4 46 2 0 67 16 14 10 1 2 39 2 1 18 3 2 86 chain 320364 chr10 135534747 + 110292235 110296705 L1P1 4361 + 4 4341 12582 101 173 186 95 30 37 530 25 0 26 0 4 44 1 0 4 1 3 130 27 18 26 93 17 212 1 0 134 0 3 414 40 0 74 0 1 251 15 1 162 0 4 608 0 1 514 0 1 543 1 0 157 1 0 23 2 1 12 chain 27529 chr10 135534747 + 110358807 110359211 LTR7B 505 + 0 495 94577 52 0 6 47 0 10 56 13 26 34 0 21 59 0 41 71 1 2 16 14 13 41 chain 76819 chr10 135534747 + 110359221 110360293 HERVH-int 3825 + 0 2307 45077 101 4 1213 118 22 13 208 0 4 29 15 42 358 10 15 178 6 5 23 chain 4800 chr10 135534747 + 110362423 110362522 MLT2C1 407 + 46 143 197360 16 3 0 35 22 23 23 chain 232750 chr10 135534747 + 110365097 110368115 L1PA7 6471 - 10 2972 17157 104 17 0 48 2 0 69 44 0 296 0 3 243 0 1 74 1 4 70 0 1 188 12 6 63 9 8 473 0 2 199 0 2 189 1 3 50 5 6 356 5 6 147 18 15 248 0 2 5 1 0 81 chain 155472 chr10 135534747 + 110395182 110397077 L1PA7 6471 - 10 1900 23925 176 1 0 4 0 2 142 0 1 21 3 4 490 1 0 35 8 0 226 16 15 46 0 1 713 0 1 13 chain 36889 chr10 135534747 + 110403055 110403565 L1PA8 5853 - 7 513 73674 77 10 9 19 2 1 50 2 1 10 1 0 71 3 1 43 1 0 190 0 3 31 chain 38999 chr10 135534747 + 110417547 110417989 L1PA5 6144 - 1 443 70746 442 chain 10638 chr10 135534747 + 110457908 110458039 L1PA4 6152 + 6022 6152 157661 83 1 2 39 2 0 6 chain 27861 chr10 135534747 + 110459416 110459754 L1PA7 6471 - 6 346 93487 100 0 3 42 1 0 195 chain 118799 chr10 135534747 + 110483192 110484558 L1PA4 6152 - 1 1362 31287 973 5 0 388 chain 165043 chr10 135534747 + 110484558 110486423 L1PA4 6152 + 2922 4792 22647 929 0 1 334 0 3 475 0 1 127 chain 21318 chr10 135534747 + 110492372 110492726 LTR3B_ 500 + 157 500 122814 145 1 0 42 29 11 4 0 1 18 37 44 78 chain 25379 chr10 135534747 + 110494850 110495161 AluYf4 310 - 0 310 102789 42 2 0 59 1 2 207 chain 272797 chr10 135534747 + 110553398 110556565 L1PA5 6144 - 3 3180 15029 223 9 0 619 1 7 769 0 1 171 0 4 189 0 4 147 0 1 428 0 1 89 0 3 288 1 2 35 7 5 191 chain 128035 chr10 135534747 + 110617176 110618604 L1PA3long 6157 - 2 1435 28558 812 0 1 28 0 4 588 chain 52380 chr10 135534747 + 110618604 110619188 L1PA3long 6157 + 5573 6157 57372 584 chain 18622 chr10 135534747 + 110642371 110642743 THE1C 375 + 0 375 131156 19 3 4 39 19 21 39 4 1 58 30 31 37 8 9 76 24 25 16 chain 4837 chr10 135534747 + 110685852 110685953 L1MB3 1562 - 218 320 196911 49 30 31 22 chain 16497 chr10 135534747 + 110705400 110705701 MER1A 529 - 135 432 136930 38 16 19 46 8 0 56 49 50 88 chain 406221 chr10 135534747 + 110709449 110714455 L1PA7 6471 + 1464 6465 9906 530 0 2 269 1 0 255 0 2 114 1 2 445 13 5 328 0 4 35 0 10 19 1 2 16 1 0 87 0 1 238 4 0 60 1 16 583 2 1 137 1 0 326 1 0 403 1 0 239 0 1 26 6 0 7 15 0 54 17 22 195 1 0 423 2 1 137 6 0 6 chain 25583 chr10 135534747 + 110714457 110714769 AluY 311 + 1 304 101806 125 5 0 171 4 0 7 chain 3917 chr10 135534747 + 110727044 110727087 U5 65 + 1 44 208583 43 chain 22724 chr10 135534747 + 110727245 110727519 AluY 311 + 14 289 116960 118 0 1 156 chain 33268 chr10 135534747 + 110731788 110732168 L1PA3long 6157 + 5780 6157 78778 372 3 0 5 chain 4712 chr10 135534747 + 110744156 110744213 Tigger4a 237 - 171 228 198380 57 chain 442414 chr10 135534747 + 110753025 110758117 L1PA5 6144 + 1027 6134 8985 123 1 4 75 0 1 203 1 0 10 1 5 1810 0 2 776 0 1 142 0 3 1493 8 10 287 1 0 9 6 6 105 0 1 41 chain 57238 chr10 135534747 + 110760099 110760811 L1PA8 5853 - 0 707 54375 93 1 0 19 3 2 47 6 5 8 1 0 71 2 0 129 0 1 332 chain 24959 chr10 135534747 + 110772805 110773104 AluY 311 + 0 293 105008 126 5 0 51 1 0 116 chain 24757 chr10 135534747 + 110783499 110783798 L1PA7 6471 + 5310 5614 106128 94 0 1 197 0 4 8 chain 68646 chr10 135534747 + 110783799 110784649 L1PA7 6471 + 5618 6469 48962 80 0 2 430 2 1 21 0 1 128 0 1 176 2 0 11 chain 11310 chr10 135534747 + 110800734 110801459 LTR12D 1347 + 587 1202 155031 105 333 356 34 225 92 28 chain 402736 chr10 135534747 + 110801544 110806432 HERV9-int 5642 + 0 4825 10004 47 0 5 574 0 1 161 32 32 226 80 0 61 4 0 61 0 1 373 0 1 100 1 2 920 2 4 175 0 3 450 0 1 793 1 2 285 0 3 478 0 2 64 chain 80147 chr10 135534747 + 110807590 110808830 LTR12D 1347 + 0 1347 43531 181 44 44 40 21 16 19 5 41 40 16 15 140 0 31 13 41 0 28 0 1 40 0 2 42 55 43 46 2 1 8 2 1 193 0 97 168 1 2 95 chain 9369 chr10 135534747 + 110821455 110821591 Tigger3a 397 - 84 217 163719 100 12 9 24 chain 15774 chr10 135534747 + 110844329 110844669 L1PB 1623 - 48 353 139040 23 76 51 12 4 1 4 1 0 30 2 1 7 1 0 36 0 2 104 6 0 34 chain 26041 chr10 135534747 + 110845917 110846197 L1HS 6032 - 622 902 99855 280 chain 58392 chr10 135534747 + 110846205 110846826 L1HS 6032 + 5410 6031 53751 621 chain 272604 chr10 135534747 + 110852459 110855469 L1PA3long 6157 - 2224 5236 15041 513 1 0 128 1 0 346 1 4 347 0 1 1673 chain 200613 chr10 135534747 + 110855476 110857691 L1PA3long 6157 + 3935 6157 19166 236 0 1 413 0 5 1054 0 1 512 chain 45021 chr10 135534747 + 110889524 110890043 L1PA6 6164 + 5632 6159 63033 103 0 8 416 chain 498851 chr10 135534747 + 110891189 110897313 L1PA6 6164 + 17 6162 6908 183 1 0 218 9 10 32 4 5 34 4 3 4 0 1 60 1 0 115 5 6 402 0 3 519 0 1 222 1 0 498 0 1 12 1 14 106 2 0 110 9 0 14 1 5 4 1 0 192 8 7 239 0 1 547 0 3 106 3 0 8 5 6 593 0 2 250 0 1 57 0 1 700 0 4 319 14 16 511 chain 56247 chr10 135534747 + 110908216 110909039 MER4E1 777 - 7 777 54997 13 0 2 89 0 1 114 1 9 125 36 0 81 47 21 298 2 0 17 chain 124674 chr10 135534747 + 110913783 110915195 L1PA4 6152 + 4727 6139 29483 1412 chain 26514 chr10 135534747 + 110936901 110937253 THE1B 368 - 0 361 97996 175 4 0 19 2 0 116 3 18 33 chain 86298 chr10 135534747 + 110943612 110944687 L1PA7 6471 - 12 1094 41045 264 10 1 57 0 1 506 0 6 6 1 0 4 0 1 9 3 12 215 chain 281578 chr10 135534747 + 110954141 110958026 L1PA7 6471 - 3 3637 14560 50 0 1 280 0 1 433 1 0 86 4 7 302 6 5 25 10 12 34 0 1 31 16 4 90 1 0 101 0 4 218 5 13 90 0 12 386 0 3 71 1 0 7 3 4 187 0 1 53 15 20 54 0 3 298 1 0 4 0 7 60 8 7 127 34 35 181 309 0 57 0 6 158 0 13 36 0 4 52 chain 29531 chr10 135534747 + 110958028 110958396 L1PA7 6471 + 2477 2842 86525 160 1 0 4 2 0 201 chain 545090 chr10 135534747 + 110983379 110989393 L1PA2 6032 + 1 6032 2064 129 4 0 7 22 36 83 1 0 2885 0 4 1084 0 4 1799 chain 170424 chr10 135534747 + 111001084 111002937 L1PA2 6032 + 4175 6030 22002 1051 0 2 802 chain 45134 chr10 135534747 + 111016512 111017066 MER41A 554 - 0 554 62888 554 chain 29147 chr10 135534747 + 111036394 111036701 AluYg6 310 + 0 307 88327 307 chain 28641 chr10 135534747 + 111051700 111052007 AluYa5 310 - 4 310 90557 180 1 0 126 chain 25940 chr10 135534747 + 111053635 111053986 THE1B 368 + 5 368 100250 39 6 23 101 1 0 28 0 1 3 4 0 94 1 0 74 chain 13295 chr10 135534747 + 111055534 111055719 THE1B 368 + 0 198 147109 44 0 15 58 1 0 52 6 5 24 chain 10074 chr10 135534747 + 111055756 111055881 THE1B 368 + 243 368 160201 125 chain 13002 chr10 135534747 + 111065351 111065643 LTR23 429 - 113 427 148243 42 0 1 95 91 0 9 17 129 38 chain 52113 chr10 135534747 + 111065976 111066720 MER4E 760 - 7 760 57552 130 0 2 8 19 25 23 0 2 187 7 5 39 1 0 73 20 21 206 16 17 15 chain 38621 chr10 135534747 + 111066792 111067289 LTR6B 557 - 16 557 71264 40 0 1 6 0 1 93 1 0 40 0 1 272 25 67 20 chain 31877 chr10 135534747 + 111071720 111072181 MLT2A1 477 - 22 477 81053 16 4 0 9 1 0 18 3 27 13 28 0 49 1 0 80 1 0 69 7 11 22 0 1 140 chain 193495 chr10 135534747 + 111072181 111074526 HERVL-int 5654 - 0 2422 19736 223 0 1 205 3 0 16 0 4 867 3 6 35 0 1 41 0 50 194 0 2 56 6 24 511 0 1 185 chain 28239 chr10 135534747 + 111078245 111078544 L1HS 6032 - 0 299 92157 299 chain 277479 chr10 135534747 + 111096113 111099522 L1P2 5180 - 2 5178 14779 4 1 0 38 1 0 47 1 0 1203 0 1 312 0 1786 520 0 1 473 1 0 6 1 0 83 8 0 100 7 0 89 1 0 14 0 3 249 3 2 53 1 0 45 5 4 143 chain 7824 chr10 135534747 + 111101677 111101902 MLT1A 405 + 124 354 172164 49 6 0 11 101 112 58 chain 24313 chr10 135534747 + 111102441 111102827 L1PA8 5853 + 5472 5853 108590 26 1 4 62 1 0 46 2 0 42 55 52 36 2 1 19 1 0 93 chain 60076 chr10 135534747 + 111123890 111125426 L1PREC2 3366 - 1046 1915 52789 205 8 0 47 9 1 13 648 13 29 0 1 156 1 0 35 0 1 9 0 10 8 38 28 165 19 1 118 0 1 28 chain 516408 chr10 135534747 + 111127027 111133163 L1PA5 6144 + 0 6141 5539 135 7 33 986 31 22 122 0 2 409 3 0 284 0 1 319 6 1 455 0 4 235 0 1 186 9 1 315 4 7 215 7 0 229 9 0 202 0 1 170 0 9 685 0 1 264 1 0 83 1 0 764 chain 22281 chr10 135534747 + 111142780 111143142 MER4A1 472 + 106 472 118995 114 4 26 22 43 22 17 1 0 58 5 8 54 0 1 44 chain 22480 chr10 135534747 + 111143907 111144241 MER4E 760 + 418 753 118110 109 16 12 88 13 12 56 0 6 52 chain 23887 chr10 135534747 + 111151035 111151427 MSTB 430 - 4 414 110977 52 0 1 67 6 11 17 62 74 81 0 1 97 1 0 9 chain 457567 chr10 135534747 + 111153033 111159080 L1PA8A 6298 + 28 6040 8490 6 6 0 6 1 0 15 1 0 11 23 13 20 4 1 19 19 10 19 1 0 9 2 1 12 2 1 6 1 0 10 2 0 17 8 5 11 28 24 13 4 0 8 1 0 43 4 3 19 2 0 74 2 0 18 1 0 9 11 9 83 7 8 581 1 4 17 6 0 8 2 0 398 4 5 236 0 18 635 23 23 52 3 0 51 6 5 70 0 1 197 2 3 107 0 1 88 7 6 200 48 48 87 5 6 27 5 4 35 0 7 247 4 0 372 2 1 355 0 1 73 0 1 53 0 1 991 0 3 174 1 2 155 7 5 115 0 1 39 chain 60784 chr10 135534747 + 111174106 111174767 L1PA3long 6157 - 0 661 52432 661 chain 79302 chr10 135534747 + 111174767 111175630 L1PA3long 6157 + 4621 5484 43909 863 chain 7762 chr10 135534747 + 111179506 111179598 MER85 139 + 4 96 172530 92 chain 11838 chr10 135534747 + 111199657 111199842 L1PA8 5853 - 0 181 152876 92 2 1 19 2 1 44 10 9 8 1 0 7 chain 33082 chr10 135534747 + 111263670 111264150 MER9a3 513 - 0 513 79077 75 8 9 9 0 1 114 2 12 18 0 17 68 10 11 14 1 0 53 0 1 67 0 2 5 2 1 16 0 2 18 chain 12783 chr10 135534747 + 111270088 111270321 L1PA15 4387 - 31 248 149124 25 5 0 16 3 1 44 6 3 50 1 0 16 4 0 13 15 14 35 chain 22994 chr10 135534747 + 111270328 111270669 THE1B 368 + 0 368 115649 44 0 15 113 3 2 24 33 45 87 0 1 37 chain 13136 chr10 135534747 + 111276583 111276762 MER30 238 - 0 197 147699 39 0 3 58 2 0 9 5 22 66 chain 22064 chr10 135534747 + 111286531 111286812 AluY 311 + 19 296 119946 257 10 6 14 chain 76554 chr10 135534747 + 111291648 111292619 L1PA7 6471 - 1 968 45185 7 11 0 4 0 1 699 0 5 54 0 2 7 0 1 17 5 0 52 1 0 18 1 5 95 chain 19715 chr10 135534747 + 111292803 111293043 AluSp 311 + 58 299 128052 223 0 1 17 chain 29602 chr10 135534747 + 111293235 111293547 AluYb8 318 - 6 318 86207 312 chain 498903 chr10 135534747 + 111296380 111302786 L1PA7 6471 - 1 6466 6904 154 0 1 4 2 3 680 0 3 147 0 1 193 2 1 304 2 0 92 0 16 66 0 2 131 0 4 154 0 1 72 0 1 609 2 3 52 0 1 31 0 1 73 0 1 56 4 15 965 2 3 76 0 1 748 8 4 108 0 1 4 2 1 107 0 1 281 27 46 225 71 71 209 0 5 165 3 0 104 2 1 66 3 0 162 5 6 233 chain 71454 chr10 135534747 + 111305102 111306052 L1P2 5180 + 2 923 47719 150 1 0 42 1 0 53 1 0 227 1 2 30 0 1 8 1 0 50 1 0 140 24 0 82 1 0 5 2 1 130 chain 499657 chr10 135534747 + 111306059 111312209 L1PA6 6164 + 0 6161 6853 11 1 2 358 0 8 9 16 15 95 14 13 112 1 0 164 17 0 20 8 25 602 8 12 692 0 1 60 1 2 124 5 0 399 0 3 299 0 1 157 0 1 4 0 1 26 0 1 4 1 0 1558 0 1 387 0 1 124 17 16 8 0 3 831 6 0 11 chain 8559 chr10 135534747 + 111322515 111322608 LTR7 482 + 377 470 167966 93 chain 293616 chr10 135534747 + 111322623 111326361 HERVH-int 3825 + 0 3825 13791 26 0 1 131 0 2 21 1 5 147 1 0 31 15 16 93 15 17 42 1 0 26 12 162 6 1 0 54 56 0 122 0 1 313 9 1 6 7 0 49 2 1 157 10 0 37 10 9 96 5 0 434 0 4 76 4 9 206 0 1 1106 24 25 302 0 6 84 chain 30468 chr10 135534747 + 111327593 111328010 LTR7 482 + 0 446 83491 94 24 21 110 0 1 4 0 31 185 chain 36482 chr10 135534747 + 111331955 111332366 L1PA2 6032 - 0 416 74261 144 0 5 267 chain 253597 chr10 135534747 + 111354312 111360239 L1PA11 4918 + 8 4508 16052 8 1 0 25 3 1 29 2 1 7 3 0 36 1 0 13 2 0 52 1 0 32 2 0 6 2 1 110 0 1 14 5 0 7 0 5 278 1 2 108 3 0 131 0 5 78 31 31 360 59 60 128 0 1 17 2281 2 26 0 1 228 5 2 205 0 7 176 3 0 11 0 1 20 1 0 23 24 21 5 0 2 10 0 4 85 0 3 106 11 15 38 0 1 8 18 19 234 0 1 242 3 853 343 0 1 18 1 5 59 6 0 58 7 6 80 2 0 14 1 0 20 chain 21941 chr10 135534747 + 111355867 111356223 THE1B 368 - 0 366 120457 49 5 13 16 19 21 70 9 7 21 1 0 129 1 6 23 2 0 11 chain 25532 chr10 135534747 + 111357790 111358141 THE1B 368 - 0 368 102090 48 6 14 111 2 0 22 2 1 119 0 14 26 2 0 13 chain 492216 chr10 135534747 + 111365206 111370718 L1PA3long 6157 + 0 6152 7256 94 0 526 36 16 0 120 0 128 1793 1 0 1657 0 4 283 1 0 1511 chain 94045 chr10 135534747 + 111372186 111373267 L1PA5 6144 - 2 1084 38337 330 1 2 587 1 0 155 0 1 7 chain 91223 chr10 135534747 + 111373267 111374291 L1PA5 6144 + 4056 5086 39226 281 0 4 654 0 1 58 0 1 31 chain 26321 chr10 135534747 + 111385917 111386268 THE1B 368 - 19 368 98733 156 8 6 19 1 0 83 0 1 84 chain 173716 chr10 135534747 + 111389868 111391913 L1PA6 6164 - 2 2051 21621 5 2 0 140 0 1 700 0 5 245 7 1 291 0 1 131 0 1 451 1 5 72 chain 23025 chr10 135534747 + 111391913 111392202 L1PA7 6471 + 6172 6468 115511 46 1 0 58 0 2 30 6 12 148 chain 12227 chr10 135534747 + 111393100 111393317 LTR8 732 - 471 701 151310 16 2 18 14 39 42 132 6 0 8 chain 178435 chr10 135534747 + 111394241 111397035 MER4-int 2692 + 17 2692 21124 19 2 0 50 0 1 28 11 12 92 5 6 121 0 27 182 1 0 6 0 11 59 0 1 92 3 2 125 10 12 28 6 0 20 6 16 319 0 1 129 23 24 33 41 58 16 6 1 129 302 0 37 1 6 81 3 2 17 1 0 120 4 121 251 0 3 10 0 2 405 chain 537482 chr10 135534747 + 111412115 111418230 L1PA4 6152 + 0 6152 3238 132 4 0 677 0 1 691 5 0 981 0 1 323 0 1 514 0 1 358 4 2 361 0 2 1155 2 1 189 1 0 301 0 18 290 1 2 82 14 39 30 chain 3280 chr10 135534747 + 111423869 111423908 MER52D 1964 + 1220 1259 219365 39 chain 70752 chr10 135534747 + 111429870 111430864 L1PB3 3668 - 2249 3250 47943 106 1 0 5 1 2 14 12 15 57 3 0 15 1 0 228 4 2 8 0 1 90 3 0 30 10 22 406 chain 121293 chr10 135534747 + 111430864 111432941 L1PB3 3668 + 1526 3595 30605 60 9 11 34 78 78 269 7 11 68 36 24 31 10 0 155 30 31 36 4 9 57 0 1 30 17 16 92 8 9 119 7 6 315 2 0 18 12 7 8 0 1 12 0 4 47 2 1 106 0 7 25 12 13 39 3 2 9 8 7 5 0 1 29 5 27 25 21 22 75 20 4 14 9 7 25 3 1 30 14 10 12 2 1 13 chain 509296 chr10 135534747 + 111441741 111447472 L1PA4 6152 - 421 6152 6218 847 1 0 1111 0 1 965 0 1 960 0 5 340 5 0 149 1 0 1352 chain 63288 chr10 135534747 + 111459480 111460380 LTR12D 1347 + 405 1347 51327 131 0 31 85 8 24 9 0 18 116 24 24 42 1 2 135 27 0 27 4 3 30 1 0 196 1 5 37 0 1 26 chain 7048 chr10 135534747 + 111473791 111473944 MER50 708 + 72 230 177122 16 60 65 77 chain 14157 chr10 135534747 + 111482336 111482571 L1PA15 4387 - 85 311 144019 32 6 3 50 1 0 12 6 4 16 1 0 54 1 0 26 6 5 24 chain 15209 chr10 135534747 + 111482590 111482798 L1PA5 6144 + 5957 6129 140751 150 36 0 22 chain 25680 chr10 135534747 + 111484439 111484727 L1PA3long 6157 + 5720 6008 101371 288 chain 12367 chr10 135534747 + 111484727 111484874 L1PA3long 6157 + 6010 6157 150769 147 chain 4456 chr10 135534747 + 111489800 111489880 L1MA7 2200 + 1868 1947 201276 37 14 13 29 chain 58398 chr10 135534747 + 111490821 111491522 L1PA6 6164 - 3 710 53748 524 0 10 30 5 1 142 chain 100174 chr10 135534747 + 111508698 111510150 L1PB1 5432 - 329 1779 36726 20 4 0 6 22 38 24 0 1 5 13 7 179 1 2 151 9 0 38 15 0 14 0 1 33 26 33 565 0 1 50 3 4 198 8 0 13 14 26 41 chain 63557 chr10 135534747 + 111526048 111526742 L1PA3long 6157 + 5463 6157 51214 694 chain 128979 chr10 135534747 + 111552369 111553945 THE1A-int 1579 - 0 1579 28313 441 0 1 224 0 1 328 0 1 583 chain 536770 chr10 135534747 + 111555287 111561302 L1PA3long 6157 - 1 6147 3344 153 0 1 54 3 0 74 0 2 493 0 1 71 1 0 3123 0 1 1279 9 137 614 0 1 105 0 1 36 chain 33238 chr10 135534747 + 111570438 111570859 THE1B-int 1605 - 1180 1605 78818 79 0 1 222 8 11 112 chain 567950 chr10 135534747 + 111572183 111578215 L1HS 6032 - 1 6032 28 156 1 0 5875 chain 6545 chr10 135534747 + 111582559 111582637 LTR43 600 - 0 78 180885 78 chain 543977 chr10 135534747 + 111585577 111591604 L1PA3long 6157 + 0 6151 2215 72 7 0 80 0 1 589 1 0 34 0 128 1782 0 2 3079 0 1 383 chain 41579 chr10 135534747 + 111618143 111618682 L1PA8 5853 - 0 535 67188 93 1 0 10 7 6 56 1 0 9 2 1 68 5 3 45 1 0 188 0 3 53 chain 24137 chr10 135534747 + 111639057 111639348 AluSg4 309 + 10 301 109542 291 chain 44525 chr10 135534747 + 111660660 111661167 L1PA5 6144 + 5603 6132 63550 331 0 23 128 1 0 47 chain 7726 chr10 135534747 + 111665283 111665456 L1MB2 1706 + 1542 1695 172741 26 31 15 14 1 0 14 1 0 37 12 10 37 chain 23386 chr10 135534747 + 111690355 111690664 AluSp 311 + 3 311 113727 171 10 9 128 chain 66923 chr10 135534747 + 111744722 111745845 L1PB1 5432 - 5 1087 49675 4 1 0 19 1 0 13 1 0 21 1 0 12 39 34 27 14 1 13 7 6 40 1 0 16 2 1 53 2 0 8 5 1 11 1 0 9 1 0 24 5 0 6 51 8 48 1 0 5 9 10 135 0 2 54 6 44 4 0 1 101 1 0 75 12 7 122 0 1 10 0 4 89 11 11 32 chain 54006 chr10 135534747 + 111745853 111746517 L1PB1 5432 + 3672 4344 56360 13 0 4 39 2 5 229 5 6 376 chain 8278 chr10 135534747 + 111783646 111783775 L1PA16 3655 + 3461 3589 169524 59 0 1 39 10 11 6 3 0 12 chain 22428 chr10 135534747 + 111790760 111791056 AluSp 311 + 9 298 118347 80 0 1 118 0 1 70 2 0 9 7 0 10 chain 9527 chr10 135534747 + 111828119 111828306 MER2 342 + 37 291 162941 29 18 83 74 28 29 27 0 1 11 chain 25983 chr10 135534747 + 111871392 111871691 AluSp 311 + 1 302 100081 140 0 2 159 chain 55448 chr10 135534747 + 111879833 111880432 L1PA2 6032 - 2 602 55439 413 0 1 186 chain 11510 chr10 135534747 + 111884614 111884790 MER30 238 + 36 234 154250 71 17 36 46 1 4 41 chain 20425 chr10 135534747 + 111915271 111915492 L1PA3long 6157 + 5936 6157 125829 221 chain 42650 chr10 135534747 + 111945198 111945750 L1PA8 5853 - 0 546 65839 91 0 2 5 3 0 6 14 13 57 5 4 67 2 0 44 1 0 257 chain 22791 chr10 135534747 + 111946098 111946401 AluY 311 + 0 297 116624 26 0 1 106 10 1 97 3 5 61 chain 13389 chr10 135534747 + 111948241 111948409 Tigger3a 397 + 158 326 146757 168 chain 42417 chr10 135534747 + 112006894 112007364 L1PA4 6152 - 750 1220 66122 470 chain 65447 chr10 135534747 + 112007364 112008102 L1PA4 6152 + 5402 6140 50359 738 chain 3115 chr10 135534747 + 112040070 112040121 L1MC4a 1092 - 305 355 222659 32 5 4 14 chain 25180 chr10 135534747 + 112040162 112040460 AluY 311 + 6 305 103845 126 0 1 172 chain 24791 chr10 135534747 + 112078903 112079219 AluY 311 + 0 307 105936 29 4 0 94 9 4 180 chain 28691 chr10 135534747 + 112090403 112090744 LTR14A 344 + 0 344 90364 17 1 0 154 0 4 169 chain 5251 chr10 135534747 + 112091694 112091855 LTR12C 1709 + 773 1053 166278 39 66 185 56 chain 11009 chr10 135534747 + 112091891 112092071 LTR12C 1709 + 651 790 156176 32 41 0 107 chain 1011 chr10 135534747 + 112091933 112091964 LTR12C 1709 + 1053 1084 166278 31 chain 14904 chr10 135534747 + 112106938 112107208 MER57B2 428 + 0 295 141619 124 0 19 8 64 70 74 chain 29186 chr10 135534747 + 112130797 112131141 L1PA7 6471 + 6122 6466 88114 344 chain 23051 chr10 135534747 + 112131505 112131848 LTR7B 505 - 9 505 115390 21 0 1 20 14 13 88 4 45 23 1 0 7 10 112 48 1 11 91 0 1 15 chain 22675 chr10 135534747 + 112138416 112138799 THE1D 372 + 0 372 117190 56 16 7 54 4 0 49 50 52 154 chain 7894 chr10 135534747 + 112193997 112194155 MER53 195 + 29 189 171690 37 39 42 56 2 1 24 chain 3544 chr10 135534747 + 112198337 112198379 MER3 215 - 1 43 214638 42 chain 57249 chr10 135534747 + 112211878 112212879 L1MA1 4479 + 2127 2984 54367 290 229 94 91 1 0 41 1 2 23 1 0 21 4 1 81 2 0 29 8 7 61 1 0 90 1 0 26 chain 220794 chr10 135534747 + 112227915 112230929 L1PA6 6164 - 13 6164 17828 198 6 11 907 335 0 122 0 1 777 37 3502 66 1 0 48 0 2 517 chain 9527 chr10 135534747 + 112232242 112232361 MER30 238 - 0 146 162945 100 1 28 18 chain 28474 chr10 135534747 + 112275756 112276066 AluYf4 310 - 4 310 91291 6 4 0 300 chain 11956 chr10 135534747 + 112329241 112329375 L1PA6 6164 + 6005 6139 152377 134 chain 23083 chr10 135534747 + 112345048 112345344 AluSg7 307 - 9 305 115224 18 5 6 148 1 0 124 chain 25607 chr10 135534747 + 112347158 112347468 AluY 311 + 1 307 101688 81 4 0 225 chain 3051 chr10 135534747 + 112402457 112402543 HY1 111 - 22 111 223979 5 0 1 26 38 40 17 chain 15654 chr10 135534747 + 112463995 112464218 L1MD2 1676 - 322 535 139417 31 1 0 140 10 1 41 chain 41918 chr10 135534747 + 112487405 112487957 L1PA8 5853 - 0 545 66735 83 11 10 19 2 1 47 17 15 70 2 0 44 1 0 256 chain 156677 chr10 135534747 + 112526084 112528025 SVA_D 2077 - 0 2077 23773 628 0 1 47 4 0 13 24 0 4 1 0 33 0 1 35 71 65 26 1 0 170 0 52 14 0 2 25 0 1 10 17 59 129 40 0 268 0 99 339 0 18 18 4 0 20 chain 5469 chr10 135534747 + 112526873 112526944 SVA_D 2077 - 983 1103 92041 8 2 52 48 1 0 12 chain 11571 chr10 135534747 + 112532199 112532412 Tigger3a 397 + 42 330 154019 33 37 87 8 2 0 111 1 28 21 chain 87383 chr10 135534747 + 112615969 112616940 L1PA2 6032 + 5071 6030 40619 787 5 0 28 8 1 143 chain 2757 chr10 135534747 + 112693276 112693311 MER102b 334 - 19 53 229359 8 1 0 26 chain 51538 chr10 135534747 + 112712319 112713071 L1PA8 5853 - 1 744 57938 91 5 4 16 4 3 47 7 6 6 1 0 20 0 2 49 3 1 43 1 0 49 5 4 36 23 20 346 chain 51799 chr10 135534747 + 112749886 112750507 LTR12C 1709 + 549 1371 57755 150 0 159 113 0 41 99 1 0 6 2 0 107 0 4 143 chain 27586 chr10 135534747 + 112766122 112766427 AluYa5 310 - 15 310 94392 9 10 0 286 chain 21518 chr10 135534747 + 112770200 112770448 L1PA5 6144 + 5893 6142 122078 17 0 1 231 chain 27480 chr10 135534747 + 112791586 112791939 THE1A 353 - 0 351 94716 231 2 1 11 1 0 108 chain 129267 chr10 135534747 + 112791946 112793509 THE1A-int 1579 - 6 1579 28250 40 4 0 363 2 0 252 0 2 33 0 3 405 5 9 122 0 4 34 0 1 37 0 2 266 chain 9276 chr10 135534747 + 112793520 112793625 THE1A 353 - 12 117 164183 105 chain 546873 chr10 135534747 + 112802898 112809021 L1PA4 6152 + 0 6139 1844 876 0 1 281 0 2 614 3 0 651 0 1 1260 0 3 251 0 1 227 2 1 180 0 8 925 16 20 837 chain 6274 chr10 135534747 + 112826642 112826750 L1MA5A 2387 + 2215 2295 182978 17 28 0 63 chain 18019 chr10 135534747 + 112847631 112847830 L1PA5 6144 - 15 214 132803 199 chain 25271 chr10 135534747 + 112866292 112866647 THE1D 372 + 0 372 103363 104 0 1 61 22 28 74 0 10 94 chain 3612 chr10 135534747 + 112875612 112875694 MER53 195 + 0 92 213455 14 26 36 42 chain 128773 chr10 135534747 + 112912880 112914505 L1PA8 5853 - 1 1616 28371 92 1 0 17 1 0 39 14 12 13 5 4 67 2 0 44 1 0 261 1 0 215 0 1 78 1 0 3 2 0 45 1 0 136 1 2 230 0 1 355 chain 117413 chr10 135534747 + 112927164 112928638 L1PA7 6471 - 6 1916 31990 6 3 0 143 1 9 101 0 2 255 4 5 181 9 6 122 0 21 55 0 1 328 0 412 31 8 0 107 0 4 37 1 2 82 chain 37435 chr10 135534747 + 112928640 112929107 L1PA7 6471 + 4077 4553 72915 19 1 2 219 0 3 44 4 9 180 chain 18166 chr10 135534747 + 112932209 112932766 L1PREC2 3366 - 320 829 132421 33 13 11 31 44 27 14 175 151 23 60 56 108 1 0 55 chain 83858 chr10 135534747 + 112938029 112938944 L1PA2 6032 + 5117 6032 41964 915 chain 11635 chr10 135534747 + 112944766 112944911 Tigger2 2703 + 2320 2483 153751 58 0 18 87 chain 124315 chr10 135534747 + 112988582 112989969 L1PA4 6152 + 4750 6136 29592 551 1 0 77 1 0 12 0 1 745 chain 25786 chr10 135534747 + 113017134 113017441 AluY 311 + 0 308 100929 12 1 0 120 0 1 5 6 7 163 chain 25676 chr10 135534747 + 113017715 113018032 L1PA7 6471 + 6148 6470 101385 27 4 8 98 0 1 188 chain 39028 chr10 135534747 + 113038593 113039022 L1PA3long 6157 + 5719 6149 70699 150 0 1 279 chain 79666 chr10 135534747 + 113100913 113101962 MER11A 1151 - 0 1151 43749 66 1 0 90 0 2 100 1 59 19 0 1 67 0 4 38 1 2 12 6 9 137 0 13 109 1 0 118 0 11 66 1 0 10 0 1 130 0 8 24 9 12 43 chain 46077 chr10 135534747 + 113105619 113106144 L1PA4 6152 - 0 525 61967 525 chain 52167 chr10 135534747 + 113136401 113137154 MER4E 760 - 10 760 57518 154 1 5 57 1 2 87 1 0 82 0 2 92 4 0 39 1 0 4 76 77 125 5 0 24 chain 91056 chr10 135534747 + 113145888 113146975 L1PA6 6164 - 3 1095 39273 141 8 0 9 3 11 161 7 8 509 0 4 249 chain 81907 chr10 135534747 + 113146975 113147897 L1PA6 6164 + 4146 5069 42760 532 0 1 390 chain 11232 chr10 135534747 + 113164933 113165101 MER2 342 - 74 248 155300 32 3 11 34 1 0 34 1 0 63 chain 9001 chr10 135534747 + 113165862 113166104 L1MA8 2339 - 120 329 165590 18 6 0 5 8 0 36 87 68 82 chain 27593 chr10 135534747 + 113173852 113174163 AluYk4 311 - 0 311 94370 311 chain 22606 chr10 135534747 + 113175073 113175320 L1PA2 6032 + 5772 6019 117563 247 chain 28884 chr10 135534747 + 113191558 113191858 AluYa5 310 - 10 310 89520 300 chain 47752 chr10 135534747 + 113236167 113236768 PABL_A 660 - 56 660 60652 191 0 4 89 5 4 316 chain 10846 chr10 135534747 + 113249502 113249657 THE1D 372 + 0 145 156802 13 0 2 28 12 0 102 chain 2807 chr10 135534747 + 113276207 113276323 LTR16C 481 - 62 182 228646 5 0 3 26 66 67 19 chain 27113 chr10 135534747 + 113334153 113334454 AluYk4 311 - 10 311 95890 301 chain 555573 chr10 135534747 + 113343685 113349706 L1PA2 6032 + 12 6032 765 3051 1 0 2969 chain 43487 chr10 135534747 + 113362614 113363248 THE1B-int 1605 + 0 1600 64831 21 1 0 4 3 0 5 12 15 191 0 13 183 0 25 82 2 0 59 20 951 51 chain 206251 chr10 135534747 + 113368182 113370498 L1PA5 6144 + 3802 6141 18771 1220 0 1 606 4 26 486 chain 535521 chr10 135534747 + 113396873 113403000 L1PA5 6144 + 0 6143 3511 1134 0 1 129 0 1 852 7 10 182 20 12 601 0 1 1023 32 52 239 3 0 104 0 4 1424 0 1 40 0 1 184 1 0 140 4 0 8 chain 21738 chr10 135534747 + 113408686 113409030 THE1B 368 + 0 368 121249 40 0 15 112 10 9 12 45 55 125 chain 21455 chr10 135534747 + 113410614 113410948 THE1B 368 + 9 368 122312 31 0 15 14 0 1 104 1 0 24 47 56 16 0 1 97 chain 3706 chr10 135534747 + 113426683 113426730 L1MCa 1829 + 1379 1427 211853 8 0 1 39 chain 29692 chr10 135534747 + 113427991 113428377 MLT2A1 477 - 94 477 85863 81 9 8 90 0 1 33 4 1 169 chain 192527 chr10 135534747 + 113428378 113430747 HERVL-int 5654 - 1 3464 19813 535 14 1 76 6 1 441 1 4 267 0 1101 295 0 1 101 0 4 319 0 3 314 chain 6677 chr10 135534747 + 113447272 113447398 L1PB1 5432 - 214 331 179849 49 2 0 11 26 20 24 1 0 13 chain 9440 chr10 135534747 + 113447519 113447641 L1P5 443 - 6 128 163358 122 chain 40456 chr10 135534747 + 113467962 113468408 L1PA5 6144 - 4 450 68653 446 chain 16525 chr10 135534747 + 113468408 113468591 L1PA5 6144 + 5495 5678 136845 183 chain 4250 chr10 135534747 + 113473264 113473378 MER52D 1964 - 757 813 203875 34 58 0 22 chain 71600 chr10 135534747 + 113477789 113478940 L1PA15 4387 + 3130 4306 47657 39 2 0 37 0 1 7 2 1 174 1 10 159 1 2 134 0 3 11 5 7 41 0 1 56 2 0 14 3 0 30 0 4 18 1 0 11 4 2 13 30 29 25 0 10 17 8 0 83 16 30 5 1 0 27 1 0 14 14 13 27 1 0 12 13 20 50 6 3 36 chain 4468 chr10 135534747 + 113530092 113530142 L1PA5 6144 + 5701 5751 201132 50 chain 17035 chr10 135534747 + 113530143 113530337 L1PA5 6144 + 5751 5945 135503 194 chain 4380 chr10 135534747 + 113530337 113530387 L1PA5 6144 + 5946 5996 202193 50 chain 13049 chr10 135534747 + 113530388 113530533 L1PA5 6144 + 5998 6143 148033 145 chain 216606 chr10 135534747 + 113551928 113554314 L1PA3long 6157 + 3762 6147 18077 2378 1 0 7 chain 66637 chr10 135534747 + 113556172 113556927 L1PA3long 6157 - 0 759 49771 12 0 3 5 1 2 737 chain 70581 chr10 135534747 + 113556927 113557684 L1PA3long 6157 + 4641 5398 48125 757 chain 25842 chr10 135534747 + 113558815 113559175 THE1B 368 + 0 368 100690 44 5 20 107 1 0 21 2 0 99 3 0 15 7 6 56 chain 9978 chr10 135534747 + 113573211 113573553 L1PB1 5432 - 9 322 160688 18 6 5 9 1 0 3 4 0 18 115 102 32 1 0 15 2 1 41 0 2 9 27 21 9 1 0 23 3 0 5 chain 553350 chr10 135534747 + 113573565 113579588 L1PA2 6032 + 0 6028 1027 74 0 1 2584 0 4 2346 0 1 871 1 0 147 chain 127148 chr10 135534747 + 113629246 113630901 THE1A-int 1579 + 0 1579 28781 169 2 1 5 0 1 90 0 2 234 6 4 157 90 10 737 0 5 92 1 0 72 chain 8687 chr10 135534747 + 113653073 113653179 THE1C 375 - 269 375 167269 106 chain 5361 chr10 135534747 + 113675919 113676061 MER58A 224 + 59 189 191426 17 64 51 49 0 1 12 chain 16045 chr10 135534747 + 113695803 113695984 L1PA4 6152 + 5970 6151 138226 181 chain 3347 chr10 135534747 + 113696069 113696104 LTR33A 529 + 69 104 218100 35 chain 6630 chr10 135534747 + 113707982 113708067 L1ME1 1623 + 1195 1279 180235 13 1 0 71 chain 34411 chr10 135534747 + 113717299 113717752 L1PA7 6471 - 31 480 77044 116 21 21 23 0 4 37 0 2 10 14 5 145 1 0 86 chain 3746 chr10 135534747 + 113718478 113718548 MADE1 96 - 2 94 211224 33 17 39 20 chain 21397 chr10 135534747 + 113724471 113724797 THE1C 375 - 44 373 122520 127 8 11 16 2 1 23 7 11 19 0 1 47 3 1 59 2 0 13 chain 4500 chr10 135534747 + 113763750 113763817 MADE1 96 - 2 85 200776 35 1 17 31 chain 300470 chr10 135534747 + 113801110 113804497 L1PA5 6144 + 2749 6134 13397 536 1 0 397 1 3 973 1 0 433 1 0 203 1 0 840 chain 3135 chr10 135534747 + 113807050 113807187 Charlie7a 264 - 73 204 222277 22 86 80 29 chain 549562 chr10 135534747 + 113822149 113828160 L1PA2 6032 + 1 6016 1508 256 1 0 1465 0 4 2094 0 1 2195 chain 30721 chr10 135534747 + 113832669 113833084 MER1A 529 + 50 457 82999 22 12 1 6 0 7 6 0 4 281 8 0 80 chain 9431 chr10 135534747 + 113836840 113836954 MLT2A2 560 - 446 560 163405 114 chain 10045 chr10 135534747 + 113851058 113851234 MER30 238 + 36 238 160348 63 2 0 6 4 0 9 17 52 33 3 0 39 chain 21585 chr10 135534747 + 113859456 113859812 THE1B 368 - 0 368 121830 116 48 51 6 5 0 27 1 0 101 8 23 44 chain 124385 chr10 135534747 + 113859812 113861347 THE1B-int 1605 - 0 1563 29577 229 0 1 908 0 2 8 0 25 390 chain 16333 chr10 135534747 + 113861389 113861665 THE1B 368 - 0 286 137392 125 61 71 90 chain 3853 chr10 135534747 + 113861688 113861730 THE1B 368 - 324 366 209598 42 chain 543370 chr10 135534747 + 113863685 113869715 L1PA3long 6157 + 0 6156 2286 152 0 1 156 0 1 457 9 137 1236 0 1 19 0 1 46 0 2 3178 8 0 769 chain 33341 chr10 135534747 + 113957246 113957608 L1PA2 6032 - 2 364 78672 362 chain 197013 chr10 135534747 + 113964465 113966588 L1PA2 6032 + 3907 6030 19425 2123 chain 45967 chr10 135534747 + 113986245 113986817 LTR14B 630 - 0 630 62067 78 0 12 209 11 57 274 chain 2119 chr10 135534747 + 113999895 113999917 MER52A 1651 - 813 835 237477 22 chain 28723 chr10 135534747 + 114009172 114009548 THE1C 375 + 0 375 90232 180 1 0 5 9 10 155 1 0 25 chain 52658 chr10 135534747 + 114009794 114010370 L1PA3long 6157 + 5571 6147 57211 576 chain 13289 chr10 135534747 + 114010457 114010657 LTR26 622 - 221 455 147134 27 8 16 21 5 32 49 1 0 89 chain 545140 chr10 135534747 + 114010657 114016817 L1PA4 6152 + 3 6152 2057 512 2 0 61 0 3 255 17 0 133 4 5 68 1 0 413 0 4 323 3 0 327 0 1 1796 0 1 1484 0 1 478 0 1 283 chain 39083 chr10 135534747 + 114041447 114041893 L1PA7 6471 + 6025 6467 70628 436 4 0 6 chain 9851 chr10 135534747 + 114049769 114049892 Tigger7 736 + 28 150 161342 98 1 0 24 chain 11362 chr10 135534747 + 114060369 114060591 Tigger4a 237 + 29 228 154853 12 6 0 45 13 0 28 19 12 16 0 4 25 14 13 44 chain 38100 chr10 135534747 + 114088180 114088627 LTR7C 471 + 1 449 71984 106 0 1 341 chain 34422 chr10 135534747 + 114129363 114129879 LTR12C 1709 + 0 546 77027 104 2 3 166 11 16 6 5 0 43 10 53 16 3 0 54 3 0 7 14 6 72 chain 114730 chr10 135534747 + 114129886 114132428 LTR12C 1709 + 0 1669 32870 191 5 6 164 14 0 186 1 0 44 890 0 112 41 0 134 1 0 181 0 4 14 0 1 49 25 24 8 2 0 97 44 13 72 15 16 89 11 113 101 7 6 44 chain 65670 chr10 135534747 + 114130507 114131339 LTR12C 1709 + 608 1709 50256 41 0 280 183 1 0 5 3 1 106 11 4 393 5 4 84 chain 1014 chr10 135534747 + 114131493 114131534 LTR12C 1709 + 822 862 83146 12 8 7 21 chain 29438 chr10 135534747 + 114157812 114158122 AluYa5 310 - 0 310 86909 310 chain 3946 chr10 135534747 + 114165120 114165219 Tigger2a 444 + 265 369 208196 34 40 45 25 chain 24981 chr10 135534747 + 114166641 114166969 THE1A 353 - 0 326 104905 171 4 3 69 5 4 79 chain 10197 chr10 135534747 + 114167330 114167447 THE1C 375 - 258 375 159641 117 chain 4146 chr10 135534747 + 114201253 114201306 MER102b 334 + 84 137 205303 53 chain 11389 chr10 135534747 + 114227124 114227286 MER30 238 - 0 179 154749 111 4 0 6 1 22 40 chain 4774 chr10 135534747 + 114251665 114251820 MER5B 177 + 0 154 197653 48 82 81 25 chain 8252 chr10 135534747 + 114277978 114278094 MER85 139 - 0 127 169669 23 2 0 6 1 14 84 chain 127665 chr10 135534747 + 114302562 114304004 L1PA5 6144 - 124 1566 28653 726 1 0 286 0 1 429 chain 27575 chr10 135534747 + 114335768 114336078 AluYk4 311 - 1 311 94418 310 chain 180999 chr10 135534747 + 114354081 114356078 L1PA3long 6157 + 4155 6157 20900 209 0 2 941 1 0 38 0 1 796 0 3 12 chain 8051 chr10 135534747 + 114357360 114357452 FAM 185 + 65 157 170745 92 chain 28678 chr10 135534747 + 114357452 114357755 AluYh9 303 - 0 303 90420 303 chain 4838 chr10 135534747 + 114385055 114385114 L1PB1 5432 + 5158 5215 196900 9 2 0 48 chain 29259 chr10 135534747 + 114412635 114413043 MER51B 395 - 0 395 87746 61 6 1 6 0 5 63 5 6 8 1 0 205 13 0 40 chain 3812 chr10 135534747 + 114414729 114414773 MER58A 224 - 153 197 210207 44 chain 2430 chr10 135534747 + 114414808 114414963 MER5A 189 + 0 144 233950 14 24 13 12 80 80 25 chain 23546 chr10 135534747 + 114482006 114482278 L1PA5 6144 + 5871 6143 112874 272 chain 25037 chr10 135534747 + 114522901 114523213 AluY 311 + 0 298 104607 20 16 0 112 0 1 65 0 1 99 chain 3089 chr10 135534747 + 114567997 114568031 MLT1C 463 - 372 406 223112 34 chain 3337 chr10 135534747 + 114670051 114670115 MLT1K 546 - 78 136 218288 17 13 7 34 chain 6034 chr10 135534747 + 114696572 114696650 MER53 195 - 6 83 184938 9 1 0 68 chain 26329 chr10 135534747 + 114727394 114727685 AluSp 311 - 13 303 98701 35 1 0 255 chain 12222 chr10 135534747 + 114738598 114738730 L1PA5 6144 - 6 138 151330 132 chain 9224 chr10 135534747 + 114784690 114784820 Tigger4b 360 - 171 332 164434 32 1 0 83 1 33 13 chain 3188 chr10 135534747 + 114813585 114813657 MIR 256 - 110 184 221148 36 21 23 15 chain 5371 chr10 135534747 + 114830753 114830831 L1MB8 1703 - 139 218 191296 40 5 6 33 chain 17375 chr10 135534747 + 114994359 114994716 THE1B 368 + 0 298 134582 168 111 46 14 10 16 54 chain 22166 chr10 135534747 + 115022828 115023240 THE1D 372 + 16 372 119514 40 16 7 123 0 8 7 94 39 132 chain 29082 chr10 135534747 + 115031915 115032221 AluYb8 318 + 0 306 88630 306 chain 42399 chr10 135534747 + 115035771 115036300 MER41A 554 - 13 554 66149 36 0 12 493 chain 26176 chr10 135534747 + 115039510 115039806 AluYf4 310 - 17 310 99297 29 2 0 55 1 0 209 chain 3111 chr10 135534747 + 115048834 115048867 MER58A 224 + 56 89 222738 33 chain 2967 chr10 135534747 + 115094040 115094169 L1MC5 759 - 34 158 225716 10 6 0 5 2 0 19 64 67 23 chain 12114 chr10 135534747 + 115103770 115103985 L1MA2 4263 + 3840 4058 151757 61 34 39 16 11 9 93 chain 21472 chr10 135534747 + 115109128 115109397 AluY 311 + 40 310 122244 85 2 3 182 chain 22834 chr10 135534747 + 115171144 115171501 THE1C 375 - 0 375 116426 26 1 0 167 0 1 8 1 0 59 0 14 14 32 39 26 8 6 15 chain 144139 chr10 135534747 + 115172246 115173872 L1PA5 6144 - 1 1621 25460 14 6 0 842 1 0 752 0 1 11 chain 3341 chr10 135534747 + 115212556 115212653 MIRb 242 + 18 136 218207 27 46 67 24 chain 3156 chr10 135534747 + 115215777 115215818 MER51A 677 - 369 410 221826 41 chain 23016 chr10 135534747 + 115220608 115220963 THE1C 375 + 0 356 115550 68 0 1 47 43 44 34 3 4 61 1 0 91 1 0 6 chain 8270 chr10 135534747 + 115245015 115245122 MER58A 224 - 72 179 169570 107 chain 29694 chr10 135534747 + 115257913 115258230 AluYb8 318 - 1 318 85853 317 chain 47775 chr10 135534747 + 115269264 115269869 HSMAR1 1287 + 672 1286 60636 57 0 1 7 2 0 139 1 0 73 0 1 108 0 1 98 0 2 23 0 7 97 chain 3315 chr10 135534747 + 115283599 115283636 MIRb 242 + 68 105 218668 37 chain 33941 chr10 135534747 + 115294875 115295372 L1PA8 5853 - 6 507 77707 18 22 32 36 2 1 19 2 1 40 14 13 8 1 0 64 7 5 46 1 0 20 0 1 197 chain 3216 chr10 135534747 + 115297632 115297670 MADE1 96 + 7 46 220633 26 0 1 12 chain 24699 chr10 135534747 + 115429142 115429454 AluY 311 + 0 307 106441 75 6 0 57 1 2 173 chain 20066 chr10 135534747 + 115431473 115431744 MER11A 1151 - 9 290 126933 51 7 6 30 0 2 136 9 18 38 chain 497094 chr10 135534747 + 115431767 115437309 L1PA4 6152 + 592 6143 7002 284 0 1 332 1 0 4 0 1 157 0 1 2137 1 0 171 1 2 207 0 2 1413 0 4 682 1 2 151 chain 3489 chr10 135534747 + 115441163 115441201 MIRb 242 - 109 147 215526 38 chain 40233 chr10 135534747 + 115455271 115455881 MER41B 635 + 0 611 68978 93 1 0 32 13 14 223 15 16 17 14 14 18 1 0 24 16 15 124 0 2 19 chain 4205 chr10 135534747 + 115484235 115484282 MADE1 96 - 1 48 204470 47 chain 24628 chr10 135534747 + 115499640 115500000 L1PB1 5432 + 4858 5204 106841 245 5 2 9 3 0 24 1 0 9 18 13 7 2 0 37 chain 2702 chr10 135534747 + 115504605 115504662 LTR33 499 + 437 499 230206 13 16 21 28 chain 18833 chr10 135534747 + 115506847 115507062 L1PA5 6144 + 5922 6137 130568 215 chain 284752 chr10 135534747 + 115571468 115574940 L1PA8A 6298 + 2785 6290 14368 461 0 1 129 1 0 15 0 1 37 0 1 16 0 3 94 0 9 152 0 1 169 1 2 314 3 5 72 0 1 89 6 7 78 1 0 139 0 1 106 0 4 24 1 0 30 10 9 634 0 4 96 26 34 660 1 0 107 chain 31626 chr10 135534747 + 115580957 115581423 MER4A1 472 - 14 471 81438 39 19 7 206 4 0 9 9 14 153 1 0 8 4 7 14 chain 6961 chr10 135534747 + 115587033 115587123 L1PA8 5853 + 5763 5853 177737 90 chain 13221 chr10 135534747 + 115588419 115588728 THE1C 375 - 44 366 147390 79 134 146 18 0 1 78 chain 8806 chr10 135534747 + 115592773 115592883 L1MC1 2226 + 1278 1388 166615 110 chain 18108 chr10 135534747 + 115650520 115650901 THE1D 372 - 0 372 132575 32 1 0 84 101 103 90 23 11 35 1 3 14 chain 64901 chr10 135534747 + 115655714 115656434 L1PA3long 6157 + 5436 6156 50609 720 chain 24647 chr10 135534747 + 115656477 115656769 AluY 311 + 10 299 106732 9 4 0 113 0 1 166 chain 20843 chr10 135534747 + 115694343 115694605 AluY 311 + 39 299 124479 85 1 2 7 3 0 166 chain 20612 chr10 135534747 + 115701822 115702178 THE1B 368 + 0 368 125255 47 32 39 22 8 9 52 1 0 29 5 11 4 0 1 10 7 6 10 1 0 128 chain 32987 chr10 135534747 + 115702582 115702985 MLT2A1 477 - 75 477 79238 197 0 1 24 1 2 8 5 2 168 chain 74344 chr10 135534747 + 115728796 115729850 MER11C 1089 - 16 1089 46338 8 0 1 140 5 4 54 0 1 127 0 1 22 1 0 16 7 9 77 82 81 146 1 0 65 0 4 62 5 14 11 0 5 225 chain 7185 chr10 135534747 + 115786052 115786178 MER20 218 - 0 131 176176 53 23 0 7 0 29 38 1 0 4 chain 21691 chr10 135534747 + 115836708 115837023 THE1B 368 - 26 368 121429 99 32 45 27 1 0 103 9 24 44 chain 2674 chr10 135534747 + 115842879 115842907 MLT1H2 457 - 338 366 230482 28 chain 36990 chr10 135534747 + 115865367 115865859 MLT2A2 560 + 0 560 73522 98 1 0 93 1 4 211 0 11 10 1 52 71 0 4 6 chain 16101 chr10 135534747 + 115896044 115896278 MER75B 242 + 0 242 138057 29 0 2 100 7 8 29 5 8 40 1 3 23 chain 8455 chr10 135534747 + 115917769 115917915 MER20 218 + 1 155 168536 30 11 19 24 11 12 5 1 0 64 chain 4528 chr10 135534747 + 115937965 115938044 LTR64 526 - 2 72 200468 18 1 0 17 10 1 18 0 1 15 chain 24594 chr10 135534747 + 116081662 116082006 THE1B 368 + 0 353 107026 169 1 0 32 7 13 10 16 20 109 chain 26256 chr10 135534747 + 116098935 116099220 AluYd8 298 + 0 284 98996 111 1 0 173 chain 20950 chr10 135534747 + 116120671 116121018 THE1B 368 - 0 368 124106 78 3 0 47 45 56 15 10 5 25 0 4 21 1 0 62 0 15 40 chain 21700 chr10 135534747 + 116131321 116131579 L1PA7 6471 + 6211 6467 121388 73 0 1 170 3 0 12 chain 26475 chr10 135534747 + 116166016 116166441 L1PA15 4387 + 3935 4348 98150 34 3 9 126 1 0 26 1 0 54 2 1 27 10 5 50 6 3 44 3 1 12 9 4 17 chain 64255 chr10 135534747 + 116173742 116174444 L1PA3long 6157 - 15 717 50895 702 chain 85180 chr10 135534747 + 116174444 116175362 L1PA3long 6157 + 4515 5433 41458 918 chain 4572 chr10 135534747 + 116184529 116184722 L1MA8 2339 - 8 179 199969 19 101 84 27 11 6 35 chain 11194 chr10 135534747 + 116250572 116250717 BC200 147 - 0 142 155442 7 3 0 135 chain 24510 chr10 135534747 + 116269538 116269907 THE1B 368 - 0 368 107494 97 5 0 27 22 20 10 9 16 29 1 0 169 chain 4545 chr10 135534747 + 116320016 116320088 L1MB5 1630 + 1240 1313 200282 40 5 4 16 0 2 11 chain 24317 chr10 135534747 + 116329067 116329355 AluSq4 311 - 1 290 108564 183 0 1 105 chain 105091 chr10 135534747 + 116341624 116343163 L1PA16 3655 + 1585 3123 35479 127 0 8 69 7 6 106 0 1 99 25 27 35 2 5 28 4 1 9 0 3 381 1 0 185 1 0 204 9 13 11 1 0 17 0 45 15 39 0 105 22 0 15 1 2 21 chain 3692 chr10 135534747 + 116414747 116414794 FordPrefect_a 431 + 362 407 212056 37 2 0 8 chain 9215 chr10 135534747 + 116419355 116419467 L1PA5 6144 - 0 117 164478 54 0 5 58 chain 23532 chr10 135534747 + 116534701 116535086 THE1D 372 - 0 372 112951 6 0 1 25 1 0 51 10 11 86 12 12 48 7 11 9 0 1 36 19 0 75 chain 135231 chr10 135534747 + 116546457 116548082 SVA_D 2077 + 238 2056 26973 449 0 40 80 41 1 88 17 159 5 0 1 153 48 0 89 0 98 655 chain 3690 chr10 135534747 + 116547290 116547338 SVA_D 2077 + 987 1086 64883 5 0 51 43 chain 4034 chr10 135534747 + 116548638 116548717 MER53 195 + 125 194 206865 43 23 13 13 chain 26562 chr10 135534747 + 116552936 116553277 MSTA 426 + 45 395 97797 156 1 3 15 2 8 71 0 1 96 chain 4366 chr10 135534747 + 116557421 116557467 MER33 330 + 10 56 202379 46 chain 9051 chr10 135534747 + 116560709 116560823 Tigger2a 444 - 56 170 165314 114 chain 14873 chr10 135534747 + 116563621 116563783 L1PA4 6152 + 5988 6151 141704 155 0 1 7 chain 8924 chr10 135534747 + 116570360 116570487 MSTD 398 - 271 396 166007 45 6 5 58 1 0 17 chain 4587 chr10 135534747 + 116645943 116645998 MIR 256 - 86 141 199772 55 chain 32445 chr10 135534747 + 116656183 116656624 MER4A1 472 + 0 472 80119 15 5 8 10 1 0 8 0 7 172 0 1 6 0 8 158 1 14 65 chain 46705 chr10 135534747 + 116656663 116657243 LTR10C 591 + 0 587 61453 34 2 0 25 0 2 77 3 1 305 0 7 58 1 3 75 chain 27568 chr10 135534747 + 116745558 116745957 Tigger1 2417 - 2003 2387 94443 111 10 12 180 2 0 67 15 0 14 chain 20168 chr10 135534747 + 116768422 116768778 THE1B 368 - 0 368 126620 56 7 6 66 8 16 10 33 37 42 23 24 111 chain 51541 chr10 135534747 + 116796659 116797280 LTR12_ 688 + 0 688 57934 29 5 6 45 0 66 542 chain 248115 chr10 135534747 + 116797301 116800422 HERV9-int 5642 + 0 4824 16359 23 2 3 89 19 10 291 1 0 297 0 4 74 1 0 312 89 0 6 1 2 508 2 0 468 4 7 223 0 1 4 1 0 518 0 1795 177 0 1 11 chain 53415 chr10 135534747 + 116801893 116802531 LTR12_ 688 + 0 688 56747 115 0 49 248 0 1 275 chain 38360 chr10 135534747 + 116838545 116839008 L1P1 4361 - 3894 4357 71630 463 chain 27655 chr10 135534747 + 116847503 116847795 AluYa5 310 - 5 297 94196 292 chain 20103 chr10 135534747 + 116850724 116850952 L1PA7 6471 - 7 235 126817 228 chain 94165 chr10 135534747 + 116864991 116866248 THE1A-int 1579 + 295 1574 38309 15 0 1 167 0 2 156 35 3 9 0 32 34 1 0 4 0 1 233 8 9 186 1 2 316 3 20 89 chain 27085 chr10 135534747 + 116873193 116873533 THE1B 368 + 0 356 95986 44 1 16 109 1 0 31 0 2 154 chain 16314 chr10 135534747 + 116873547 116873769 HSMAR2 1300 + 1061 1288 137452 200 5 10 17 chain 52098 chr10 135534747 + 116877305 116878090 L1MA2 4263 - 189 963 57567 16 7 0 22 0 1 60 21 19 14 1 4 132 6 5 5 2 0 134 1 0 77 29 23 95 0 3 5 1 2 157 chain 25840 chr10 135534747 + 116888318 116888606 AluY 311 + 10 298 100699 288 chain 127130 chr10 135534747 + 116891694 116893123 L1PA5 6144 - 0 1428 28741 259 1 0 1169 chain 209738 chr10 135534747 + 116893123 116895543 L1PA5 6144 + 2292 4729 18507 278 1 2 350 0 1 24 1 9 206 0 2 229 6 7 23 0 1 877 0 1 272 0 1 82 0 1 71 chain 23096 chr10 135534747 + 116897187 116897531 THE1B 368 - 0 368 115161 16 0 1 102 7 0 8 26 43 26 2 0 113 0 15 44 chain 118614 chr10 135534747 + 116897539 116899102 THE1B-int 1605 - 8 1605 31574 102 1 8 79 1 0 55 0 1 170 18 17 75 1 0 75 0 1 467 4 9 71 10 35 201 3 0 90 0 1 140 chain 333594 chr10 135534747 + 116910491 116914351 L1PA5 6144 - 1 3845 12064 169 3 5 668 0 4 151 0 5 519 1 0 321 0 1 352 3 1 484 0 6 268 6 0 19 1 0 214 1 9 26 0 1 535 33 1 51 6 5 29 chain 259499 chr10 135534747 + 116959992 116962822 L1PA3long 6157 - 10 2838 15732 839 3 1 1988 chain 66754 chr10 135534747 + 116966442 116967224 L1PA6 6164 - 3 781 49754 7 2 0 157 7 5 609 chain 72101 chr10 135534747 + 116977712 116978708 Charlie3 2679 - 0 998 47436 43 0 1 19 35 33 35 3 0 98 1 0 338 0 1 6 4 3 68 15 22 331 chain 511778 chr10 135534747 + 117013069 117019220 L1PA6 6164 - 2 6164 6003 6 4 0 86 40 0 92 0 3 856 0 1 389 0 1 269 3 1 554 4 5 598 0 1 110 0 1 69 1 0 49 0 1 140 0 4 42 1 4 88 2 1 192 1 4 261 0 1 117 1 22 679 4 0 60 2 0 11 7 9 187 1 0 277 10 11 154 1 18 221 1 0 48 6 8 87 5 7 179 0 2 236 chain 7403 chr10 135534747 + 117023562 117023650 L1PA5 6144 - 0 88 174749 88 chain 15258 chr10 135534747 + 117030795 117030969 L1PA5 6144 - 0 174 140607 174 chain 19318 chr10 135534747 + 117041772 117041983 L1PA3long 6157 - 2 213 129187 211 chain 13086 chr10 135534747 + 117042328 117042494 L1PA7 6471 - 3 162 147897 7 4 0 121 3 0 31 chain 23788 chr10 135534747 + 117048480 117048826 THE1B 368 - 2 366 111546 47 5 13 112 4 0 13 10 9 112 1 16 42 chain 400845 chr10 135534747 + 117075523 117080802 L1PA8A 6298 - 7 5372 10060 27 10 16 6 2 0 470 0 46 234 4 3 116 1 0 154 1 0 238 0 24 248 0 1 51 5 1 442 0 1 17 21 23 181 8 12 83 12 13 5 0 1 219 0 1 51 4 0 132 1 0 65 5 6 297 0 3 132 0 2 203 0 3 184 6 4 38 0 1 36 6 1 253 1 0 390 1 2 212 1 5 14 10 8 115 3 1 19 0 1 72 0 24 138 0 1 20 10 3 38 40 16 14 1 0 13 3 0 4 0 15 16 0 4 176 chain 183498 chr10 135534747 + 117085585 117087606 L1PA3long 6157 + 4136 6157 20628 298 0 1 872 1 0 473 0 1 230 1 0 146 chain 94676 chr10 135534747 + 117098151 117099653 L1MA1 4479 - 372 1873 38172 29 8 7 119 3 0 5 1 0 18 1 0 56 10 15 13 2 0 9 1 2 8 1 0 67 12 11 9 2 0 24 1 0 125 0 5 62 2 3 96 21 0 17 0 19 125 5 0 12 1 0 89 0 1 179 2 0 101 10 9 68 10 9 17 24 22 34 2 0 19 1 4 31 2 1 16 14 27 18 chain 553354 chr10 135534747 + 117122029 117128053 L1PA2 6032 - 0 6025 1026 746 0 3 2718 0 3 1806 1 0 264 5 0 4 0 1 4 1 0 272 0 1 203 chain 120050 chr10 135534747 + 117129764 117131327 THE1B-int 1605 + 0 1600 31042 72 0 1 357 0 25 10 0 2 56 1 0 82 2 1 74 4 5 325 4 5 21 8 7 24 0 2 413 0 7 40 0 1 70 chain 19140 chr10 135534747 + 117131332 117131668 THE1B 368 + 0 345 129709 107 24 26 34 2 1 30 1 0 4 40 51 67 2 0 25 chain 25116 chr10 135534747 + 117146176 117146447 L1PA3long 6157 - 0 271 104195 271 chain 20256 chr10 135534747 + 117146447 117146691 L1PA3long 6157 + 5667 5899 126359 162 15 3 67 chain 52290 chr10 135534747 + 117165208 117165797 L1PA4 6152 - 0 594 57434 6 0 5 583 chain 30345 chr10 135534747 + 117167495 117167812 AluYb8 318 - 1 318 83790 317 chain 35638 chr10 135534747 + 117207740 117208280 L1PREC2 3366 + 761 1310 75360 29 21 14 76 4 10 26 7 24 300 16 9 61 chain 100177 chr10 135534747 + 117209309 117210826 L1PA14 3548 + 1928 3451 36725 149 13 5 127 21 44 282 4 3 150 1 0 74 0 7 31 3 4 112 1 0 22 11 9 6 2 0 43 14 10 92 22 19 14 11 8 15 1 6 61 1 0 111 16 11 36 4 2 12 1 0 5 1 0 13 0 4 20 0 1 15 chain 32717 chr10 135534747 + 117213114 117213467 L1PA3long 6157 + 5804 6157 79659 353 chain 111518 chr10 135534747 + 117214800 117216153 L1PA7 6471 + 5114 6469 33803 217 0 1 288 2 1 49 1 2 398 5 6 393 chain 76755 chr10 135534747 + 117218406 117219450 MER11C 1089 + 0 1063 45104 247 0 9 61 0 4 64 1 0 178 42 41 86 5 11 36 0 1 127 0 1 54 10 9 108 0 1 25 chain 502968 chr10 135534747 + 117245259 117251710 L1PA7 6471 - 5 6471 6672 167 26 24 430 6 5 223 0 3 28 0 2 118 0 3 54 0 1 212 1 0 119 4 5 123 7 4 264 4 16 362 8 13 82 0 2 34 0 1 161 3 4 435 1 2 5 4 0 449 0 1 85 1 0 508 0 2 255 1 3 37 1 0 195 1 0 154 0 1 6 5 4 90 9 13 236 8 3 297 1 0 227 9 8 22 9 0 186 4 1 369 0 1 109 63 69 233 chain 3365 chr10 135534747 + 117256053 117256096 L1PREC2 3366 - 2985 3028 217779 43 chain 44635 chr10 135534747 + 117259477 117260411 MER4-int 2692 - 80 722 63443 67 16 17 150 4 5 86 0 1 19 1 0 134 3 5 5 0 3 93 297 0 8 2 0 49 chain 10540 chr10 135534747 + 117262275 117262412 L1PA7 6471 + 6332 6466 158089 127 3 0 7 chain 552458 chr10 135534747 + 117290137 117296272 L1PA3long 6157 - 0 6157 1138 15 3 0 318 0 1 1463 1 5 420 0 12 197 0 10 76 0 2 467 1 0 945 1 0 3 1 0 386 3 2 1835 chain 12838 chr10 135534747 + 117299489 117299640 L1PA5 6144 + 5983 6135 148894 18 0 1 133 chain 538497 chr10 135534747 + 117341264 117347287 L1PA3long 6157 - 8 6151 3070 1568 4 0 941 1 3 457 3 4 879 4 0 1391 1 129 285 5 0 4 0 1 4 1 0 168 1 0 4 0 1 133 0 1 22 0 1 147 chain 4105 chr10 135534747 + 117352093 117352143 L1MB8 1703 - 141 191 205866 50 chain 4850 chr10 135534747 + 117388303 117388378 MADE1 96 + 3 96 196781 27 3 4 9 0 17 36 chain 95934 chr10 135534747 + 117399327 117400556 L1PA8 5853 - 0 1271 37838 38 1 2 18 2 0 52 1 0 48 2 0 6 5 6 16 24 59 25 7 11 8 1 0 46 0 4 256 1 0 249 0 2 108 1 3 314 chain 114086 chr10 135534747 + 117406308 117407621 L1PA5 6144 - 3 1315 33078 144 8 0 145 0 1 45 0 1 654 0 5 317 chain 45168 chr10 135534747 + 117407621 117408154 L1PA5 6144 + 4285 4822 62854 49 7 11 477 chain 3083 chr10 135534747 + 117414266 117414338 MLT1H1 527 + 13 85 223292 22 3 0 5 18 21 24 chain 41378 chr10 135534747 + 117421291 117421770 L1PA4 6152 - 9 481 67433 146 7 0 326 chain 19447 chr10 135534747 + 117421770 117421983 L1PA4 6152 + 5440 5653 128828 213 chain 29259 chr10 135534747 + 117436902 117437255 THE1A 353 + 0 351 87739 109 2 1 92 1 0 149 chain 14026 chr10 135534747 + 117449726 117449957 MER1B 344 - 0 225 144477 56 37 35 33 4 0 101 chain 25642 chr10 135534747 + 117480909 117481261 THE1A 353 - 0 353 101534 111 12 13 119 2 1 17 0 1 91 chain 31499 chr10 135534747 + 117490248 117490706 MLT2A1 477 - 0 477 81649 49 6 22 12 3 0 165 0 10 21 5 3 26 4 1 88 8 9 71 chain 25794 chr10 135534747 + 117502353 117502730 THE1C 375 - 2 375 100900 23 1 0 159 5 6 76 3 4 27 15 10 68 chain 3431 chr10 135534747 + 117505214 117505253 MADE1 96 - 57 96 216549 39 chain 463790 chr10 135534747 + 117512693 117518356 L1PA7 6471 - 6 5839 8266 841 0 3 487 2 1 54 4 9 893 1 2 441 0 2 14 0 1 214 1 0 53 0 4 355 0 2 375 4 8 73 6 7 815 1 0 128 9 11 111 1 0 263 0 40 29 2 0 227 13 12 4 1 0 94 13 14 52 0 113 62 1 0 19 chain 27156 chr10 135534747 + 117530741 117531040 AluYk4 311 - 12 311 95737 299 chain 9398 chr10 135534747 + 117572642 117572749 L1PA4 6152 + 6039 6146 163564 107 chain 12918 chr10 135534747 + 117580789 117580937 L1PA7 6471 - 4022 4170 148228 148 chain 330228 chr10 135534747 + 117580937 117584951 L1PA7 6471 + 2445 6465 12196 40 1 0 135 1 4 15 0 2 248 6 10 184 0 1 419 1 0 666 0 4 479 0 1 877 2 1 40 0 6 44 0 4 175 0 10 22 0 1 89 1 19 252 42 1 195 10 11 10 0 1 18 3 0 25 3 0 11 chain 26886 chr10 135534747 + 117658471 117658811 L1PA5 6144 - 1 313 96683 148 0 1 75 30 1 87 chain 22786 chr10 135534747 + 117658811 117659098 AluSp 311 - 17 291 116652 7 13 0 267 chain 6606 chr10 135534747 + 117666437 117666562 Tigger4a 237 - 125 237 180414 30 36 23 59 chain 4705 chr10 135534747 + 117667764 117667875 MLT1D 503 - 57 189 198462 49 40 61 22 chain 23758 chr10 135534747 + 117676707 117677007 AluY 311 + 8 309 111718 44 1 5 58 6 2 15 0 1 176 chain 158687 chr10 135534747 + 117682840 117684819 L1PA8A 6298 - 28 2018 23481 59 0 1 15 18 16 168 1 5 237 0 1 194 6 7 53 0 1 21 0 3 258 0 3 9 11 8 405 0 1 22 0 1 502 chain 165937 chr10 135534747 + 117684819 117686860 L1PA8A 6298 + 2223 4270 22522 277 5 1 239 0 3 222 0 4 271 1 0 113 4 2 70 10 11 39 0 1 229 5 4 47 11 6 116 0 1 133 0 1 136 0 8 113 chain 21577 chr10 135534747 + 117725826 117726179 THE1D 372 + 3 372 121858 58 4 14 90 64 69 115 1 2 21 chain 27761 chr10 135534747 + 117727183 117727556 THE1C 375 - 0 375 93833 25 1 0 119 4 7 39 1 0 169 0 2 10 1 0 4 chain 27315 chr10 135534747 + 117745025 117745377 MER51B 395 - 8 360 95225 142 1 0 51 1 2 157 chain 41016 chr10 135534747 + 117756089 117756638 MER41A 554 - 0 554 67876 123 0 1 57 8 11 95 9 8 120 2 1 50 0 3 85 chain 23263 chr10 135534747 + 117770266 117770565 AluSp 311 + 0 296 114367 48 10 9 75 2 0 164 chain 7910 chr10 135534747 + 117770590 117770733 Tigger1 2417 + 2101 2238 171589 76 37 31 30 chain 27683 chr10 135534747 + 117792148 117792442 AluYa5 310 - 16 310 94105 294 chain 214748 chr10 135534747 + 117794405 117796832 L1PA5 6144 - 12 2439 18182 241 1 0 1835 0 1 350 chain 3279 chr10 135534747 + 117796832 117796872 L1PA5 6144 + 3659 3699 213522 40 chain 4778 chr10 135534747 + 117808824 117808884 MER51A 677 + 201 261 197601 60 chain 87914 chr10 135534747 + 117811920 117812909 L1PA4 6152 - 0 1003 40405 6 0 5 15 0 3 119 0 1 698 0 5 151 chain 9423 chr10 135534747 + 117865966 117866078 MSTA 426 + 16 128 163436 112 chain 37372 chr10 135534747 + 117910048 117910543 MER75 514 + 13 514 73001 127 8 10 67 1 0 100 2 0 10 1 10 161 2 0 16 chain 24922 chr10 135534747 + 117933306 117933601 AluSp 311 + 0 291 105208 79 4 0 212 chain 35603 chr10 135534747 + 117986067 117986558 MER1A 529 - 0 479 75409 58 22 13 17 0 1 4 1 2 87 5 0 297 chain 27916 chr10 135534747 + 117994267 117994640 THE1C 375 + 0 372 93301 106 14 12 189 0 2 41 1 0 22 chain 27565 chr10 135534747 + 118048587 118048901 AluYk4 311 + 0 311 94453 123 2 0 37 1 0 151 chain 5533 chr10 135534747 + 118061611 118061703 Tigger1 2417 - 13 119 189731 42 13 27 37 chain 21003 chr10 135534747 + 118061703 118061951 AluSx 319 + 51 299 123900 248 chain 33939 chr10 135534747 + 118062738 118063126 L1PA5 6144 - 9 398 77714 138 0 1 250 chain 56579 chr10 135534747 + 118063128 118063761 L1PA5 6144 + 5092 5722 54804 202 3 0 428 chain 7987 chr10 135534747 + 118080539 118080634 L1PA7 6471 - 6 99 171130 6 2 0 87 chain 34743 chr10 135534747 + 118108391 118108905 MER1A 529 + 3 524 76554 21 6 13 139 2 1 11 7 11 244 24 22 49 1 0 10 chain 19613 chr10 135534747 + 118113607 118113953 Tigger3b 1229 + 62 421 128359 24 1 0 19 37 59 114 0 1 8 0 4 13 2 0 32 14 0 33 14 17 35 chain 28594 chr10 135534747 + 118134818 118135142 L1PA7 6471 - 10 334 90762 324 chain 13634 chr10 135534747 + 118136542 118136697 L1PA4 6152 + 5988 6143 145838 155 chain 26153 chr10 135534747 + 118140115 118140585 L1PB1 5432 + 4983 5420 99390 120 3 2 8 2 1 18 0 1 5 1 0 9 1 0 11 4 0 11 2 0 51 2 1 10 6 5 37 8 7 16 3 0 6 16 6 17 2 0 7 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 100032 chr10 135534747 + 118152733 118154254 LTR12C 1709 + 0 1709 36770 194 0 1 70 36 33 38 0 43 85 2 0 9 1 0 36 3 18 158 7 294 131 1 0 7 3 1 98 19 12 99 1 2 111 0 1 22 184 31 83 0 10 38 1 0 84 chain 9636 chr10 135534747 + 118153926 118154047 LTR12C 1709 + 1494 1625 151778 91 0 10 30 chain 94499 chr10 135534747 + 118155836 118156890 L1PA4 6152 + 5092 6152 38209 208 0 5 733 0 1 113 chain 23051 chr10 135534747 + 118158858 118159138 AluSg7 307 - 21 300 115392 154 1 0 125 chain 14243 chr10 135534747 + 118197237 118197418 MER3 215 - 0 197 143747 49 0 16 132 chain 10319 chr10 135534747 + 118209706 118209874 MER30 238 + 0 201 159037 24 5 23 56 14 29 69 chain 13295 chr10 135534747 + 118233362 118233584 L1PA13 3608 + 3289 3488 147110 47 5 4 51 22 5 47 2 0 5 2 0 18 1 0 22 chain 27178 chr10 135534747 + 118240186 118240595 LTR7 482 + 0 482 95668 68 9 47 109 22 54 10 0 1 130 12 14 49 chain 288578 chr10 135534747 + 118240597 118244363 HERVH-int 3825 + 0 3825 14116 73 0 1 259 1 0 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 41 46 19 2 1 6 0 19 14 1 0 12 22 1 69 1 0 447 15 0 64 0 1 138 9 0 29 0 2 10 1 0 215 4 31 290 0 4 70 0 3 846 3 0 5 199 39 42 1 0 55 9 11 39 0 210 268 0 2 225 chain 27185 chr10 135534747 + 118248378 118248689 AluYk4 311 + 1 311 95645 131 1 0 179 chain 31872 chr10 135534747 + 118254842 118255283 L1PA10 4194 - 92 534 81060 26 1 0 133 9 10 44 0 1 75 1 0 15 0 1 11 2 0 5 9 11 110 chain 51071 chr10 135534747 + 118256137 118256782 LTR12_ 688 - 0 688 58271 329 15 17 173 3 2 21 14 15 20 0 41 70 chain 195334 chr10 135534747 + 118258396 118261338 HERV9-int 5642 - 858 5616 19553 149 11 1806 208 0 1 159 1 0 61 0 7 13 4 0 185 10 4 33 16 18 648 0 16 44 444 368 64 14 99 104 1 0 188 14 10 461 0 2 110 chain 28016 chr10 135534747 + 118259992 118260373 HERV9-int 5642 + 1027 1417 92948 43 22 22 15 3 4 264 0 8 34 chain 52213 chr10 135534747 + 118261380 118262068 LTR12_ 688 - 0 688 57491 422 19 19 89 0 25 42 26 1 90 chain 29313 chr10 135534747 + 118265321 118265632 AluYa5 310 - 0 310 87501 184 1 0 126 chain 4976 chr10 135534747 + 118268628 118268700 L1PB4 2604 + 2351 2421 195406 23 3 1 46 chain 2946 chr10 135534747 + 118286802 118286842 MER58B 340 + 66 106 226218 40 chain 10560 chr10 135534747 + 118294053 118294186 L1PA16 3655 - 119 253 157998 86 0 1 47 chain 4673 chr10 135534747 + 118297707 118297769 U6 107 + 13 76 198829 45 1 2 16 chain 22588 chr10 135534747 + 118306992 118307260 AluY 311 + 36 305 117641 93 1 2 174 chain 12062 chr10 135534747 + 118322924 118323174 L1PB1 5432 - 8 236 151936 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 13 10 14 16 7 5 1 0 14 2 1 44 1 0 16 2 1 24 chain 41014 chr10 135534747 + 118338169 118338628 L1PA4 6152 + 5692 6151 67879 459 chain 14469 chr10 135534747 + 118371497 118371736 MER30 238 - 0 238 142988 43 3 6 30 0 6 20 37 27 106 chain 13081 chr10 135534747 + 118373811 118374201 MLT1A1 405 + 0 401 147916 26 0 1 9 7 8 43 189 199 76 1 0 39 chain 5504 chr10 135534747 + 118383021 118383099 MADE1 96 - 0 95 190002 37 1 17 25 0 1 15 chain 25235 chr10 135534747 + 118398938 118399324 L1PA17 2846 - 153 545 103565 42 1 0 19 1 0 32 3 2 9 2 0 20 0 3 13 1 13 5 1 0 18 5 0 68 1 2 119 0 1 26 chain 6378 chr10 135534747 + 118417189 118417266 MER58B 340 + 252 329 182193 77 chain 7433 chr10 135534747 + 118422864 118422954 MLT1C 463 + 360 450 174554 90 chain 15633 chr10 135534747 + 118447393 118447619 MER30 238 + 0 238 139485 30 7 6 72 4 20 62 3 0 48 chain 59177 chr10 135534747 + 118463479 118464131 L1PA4 6152 + 5497 6151 53293 148 0 2 504 chain 23474 chr10 135534747 + 118519222 118519581 THE1B 368 + 0 368 113251 169 1 0 23 59 69 107 chain 27899 chr10 135534747 + 118533525 118533819 AluYa5 310 - 16 310 93374 294 chain 22767 chr10 135534747 + 118553427 118553727 AluY 311 + 0 289 116741 123 9 5 44 2 0 82 5 0 35 chain 7523 chr10 135534747 + 118590486 118590577 Tigger3c 601 + 487 578 174025 91 chain 20998 chr10 135534747 + 118611459 118611794 THE1C 375 + 0 336 123927 64 12 7 69 1 5 34 14 16 46 1 0 4 3 4 87 chain 29258 chr10 135534747 + 118664430 118664740 AluYb9 318 + 0 309 87748 200 1 0 109 chain 22405 chr10 135534747 + 118686843 118687172 THE1B 368 - 15 368 118465 31 14 15 93 0 4 7 1 2 32 1 0 23 0 4 24 0 1 34 3 17 66 chain 534795 chr10 135534747 + 118692689 118699122 L1PA7 6471 - 9 6465 3615 141 0 1 690 3 7 334 4 0 310 2 1 300 1 5 25 0 1 818 1 0 210 1 0 4 2 4 102 7 6 17 4 2 385 0 3 203 0 4 312 0 2 90 1 0 82 1 2 1133 0 1 17 0 1 369 0 1 24 1 0 7 1 2 218 8 9 4 1 0 205 5 6 313 1 9 76 chain 11605 chr10 135534747 + 118709049 118709177 L1PA5 6144 + 6007 6135 153870 128 chain 12626 chr10 135534747 + 118757868 118758055 MER44A 345 + 37 229 149747 22 8 9 112 6 10 39 chain 19449 chr10 135534747 + 118767280 118767520 AluSc8 310 + 39 286 128825 92 7 14 141 chain 3772 chr10 135534747 + 118777062 118777104 L1MC3 1789 + 1337 1379 210777 42 chain 278960 chr10 135534747 + 118791017 118796013 L1MA2 4263 + 15 4114 14694 7 1 0 29 1 4 12 0 4 33 28 46 13 14 0 76 13 12 25 8 6 51 1 0 9 1 0 4 0 1 106 0 2 28 6 5 80 1 2 5 0 1 127 318 12 35 0 10 158 0 9 123 1 2 252 4 0 32 2 6 106 0 3 42 0 3 75 0 1 174 1 0 51 12 13 76 0 3 82 2 0 34 1 2 140 0 1 90 0 1 54 12 5 31 2 1 199 23 23 33 303 0 26 0 1 23 8 7 85 9 10 30 0 1 143 0 1 142 0 3 5 14 5 242 8 9 103 0 8 91 1 2 45 2 0 16 6 2 8 307 0 69 1 0 56 6 5 24 5 6 49 10 9 7 1 0 138 11 9 45 1 0 48 7 0 45 1 0 11 chain 12349 chr10 135534747 + 118796472 118796652 L1MC1 2226 + 302 466 150834 66 10 1 91 7 0 6 chain 13522 chr10 135534747 + 118800469 118800637 L1PA4 6152 - 9 178 146274 139 0 2 4 1 0 24 chain 20470 chr10 135534747 + 118824539 118824833 L1PA8 5853 + 5565 5853 125705 45 2 0 68 19 17 45 2 1 19 1 0 93 chain 12321 chr10 135534747 + 118831651 118831801 MLT2A1 477 + 207 357 150936 150 chain 3970 chr10 135534747 + 118833955 118834030 Charlie4z 170 + 54 137 207848 20 15 23 40 chain 30884 chr10 135534747 + 118836998 118837343 L1PA4 6152 - 0 353 82713 10 0 8 335 chain 3926 chr10 135534747 + 118837397 118837446 HSMAR2 1300 + 287 337 208479 28 0 1 21 chain 552825 chr10 135534747 + 118838550 118844574 L1PA2 6032 - 0 6032 1090 17 0 5 129 1 0 1651 0 4 2091 0 1 845 9 0 575 0 7 147 0 1 194 0 1 108 1 0 256 chain 3420 chr10 135534747 + 118847697 118847790 Tigger9b 617 + 129 231 216773 22 22 23 14 12 20 23 chain 48643 chr10 135534747 + 118867684 118868219 L1PA5 6144 + 5600 6135 59994 535 chain 5849 chr10 135534747 + 118881577 118881650 MER2 342 - 134 206 186696 26 1 0 46 chain 23180 chr10 135534747 + 118900649 118900918 AluSc 308 - 28 297 114767 269 chain 5680 chr10 135534747 + 118946212 118946281 MIRb 242 + 72 141 188304 69 chain 22204 chr10 135534747 + 118953884 118954257 THE1C 375 + 0 375 119333 85 0 1 17 19 41 9 16 0 26 0 4 7 17 9 142 10 9 25 chain 24522 chr10 135534747 + 118978126 118978507 MER51E 476 - 0 476 107431 45 4 0 16 2 0 5 24 87 153 0 35 18 10 13 104 chain 28428 chr10 135534747 + 118989602 118989969 THE1B 368 + 0 368 91473 13 2 0 24 0 5 130 2 1 120 1 0 75 chain 27148 chr10 135534747 + 119062146 119062511 THE1A 353 + 0 353 95764 110 1 0 31 1 0 61 1 0 77 1 0 20 13 5 49 chain 122914 chr10 135534747 + 119062511 119064068 THE1A-int 1579 + 0 1579 30073 81 2 0 35 0 3 50 24 24 407 0 1 119 1 0 75 1 0 7 4 21 17 0 5 140 6 5 325 0 1 191 2 1 66 0 1 4 chain 26482 chr10 135534747 + 119064068 119064421 THE1A 353 + 0 353 98108 111 1 0 26 5 6 32 1 0 27 1 0 36 4 6 109 chain 8906 chr10 135534747 + 119088959 119089087 MER85 139 - 0 139 166108 20 12 23 96 chain 24265 chr10 135534747 + 119092011 119092301 AluSp 311 - 6 295 108871 173 1 0 116 chain 21076 chr10 135534747 + 119121217 119121554 MER2 342 + 6 341 123637 56 29 37 9 1 0 187 14 5 41 chain 30879 chr10 135534747 + 119154400 119154904 L1PA15 4387 + 3835 4325 82719 56 4 2 13 1 2 24 1 0 78 2 1 93 1 0 22 0 4 45 11 10 25 4 0 6 5 4 47 9 3 46 2 0 9 chain 22268 chr10 135534747 + 119173127 119173415 AluSc5 308 + 16 298 119040 23 4 5 245 7 0 9 chain 55831 chr10 135534747 + 119185853 119186520 PABL_A 660 + 0 660 55231 48 0 1 420 8 0 191 chain 45200 chr10 135534747 + 119189913 119190427 L1PA7 6471 - 3 517 62824 514 chain 26680 chr10 135534747 + 119213042 119213399 THE1B 368 - 0 368 97386 48 2 1 26 1 0 121 8 6 111 0 15 40 chain 36488 chr10 135534747 + 119219656 119220099 LTR2 463 - 0 463 74256 272 9 29 162 chain 5601 chr10 135534747 + 119319958 119320028 MLT1B 390 + 288 357 189069 65 1 0 4 chain 42847 chr10 135534747 + 119350137 119350687 MLT2A2 560 - 0 560 65595 28 0 1 194 3 2 4 0 1 18 0 6 102 0 1 5 0 3 15 1 0 180 chain 44701 chr10 135534747 + 119377812 119378365 MER41A 554 + 0 554 63376 42 2 1 429 0 2 80 chain 40052 chr10 135534747 + 119389144 119389675 MLT2A2 560 - 0 560 69245 143 0 11 198 23 39 151 0 2 16 chain 3202 chr10 135534747 + 119422212 119422246 MER58D 378 + 323 357 220916 34 chain 6509 chr10 135534747 + 119425683 119425810 MSTB 430 - 229 375 181167 23 37 56 67 chain 30994 chr10 135534747 + 119472646 119473127 L1PB2 3958 - 120 587 82526 63 11 10 10 2 0 76 1 0 20 0 1 5 7 8 25 4 3 70 0 2 9 7 0 84 4 0 13 2 0 68 chain 38359 chr10 135534747 + 119474985 119475485 L1PA8 5853 + 5360 5853 71631 204 1 0 44 2 0 70 12 10 52 2 1 18 2 1 93 chain 16906 chr10 135534747 + 119489181 119489401 L1PA8 5853 - 0 215 135835 93 1 0 19 2 1 47 2 0 14 1 0 41 chain 3182 chr10 135534747 + 119489432 119489469 MER3 215 - 131 168 221274 37 chain 23002 chr10 135534747 + 119501812 119502159 THE1A 353 - 0 353 115611 64 0 5 70 3 0 5 6 9 83 8 7 25 0 1 11 3 0 5 2 5 36 0 1 26 chain 26872 chr10 135534747 + 119518605 119518959 MSTA 426 - 10 415 96731 166 8 59 60 2 1 26 0 1 92 chain 4737 chr10 135534747 + 119521165 119521237 MER33 330 + 124 199 198063 17 4 7 51 chain 19371 chr10 135534747 + 119546364 119546611 L1PA7 6471 + 6226 6470 129020 87 1 0 143 1 0 10 1 0 4 chain 4819 chr10 135534747 + 119561803 119561858 MER57A1 433 + 5 60 197138 55 chain 23070 chr10 135534747 + 119569021 119569387 THE1B 368 + 0 368 115297 58 0 1 4 1 0 57 2 1 48 1 0 21 3 5 4 0 1 14 8 12 4 1 0 9 2 1 66 7 6 56 chain 89113 chr10 135534747 + 119570418 119571395 L1PA3long 6157 + 5175 6157 39961 122 0 5 855 chain 4575 chr10 135534747 + 119571489 119571540 MLT1J2 417 + 69 120 199948 51 chain 554539 chr10 135534747 + 119592398 119598384 L1PA2 6032 - 2 5992 882 155 1 2 2318 0 2 238 0 1 3274 chain 67473 chr10 135534747 + 119606815 119607582 L1PA7 6471 + 5687 6454 49462 767 chain 29946 chr10 135534747 + 119634286 119634605 AluYb9 318 - 0 318 84983 200 1 0 118 chain 20734 chr10 135534747 + 119636878 119637123 AluSp 311 - 46 291 124835 245 chain 24552 chr10 135534747 + 119660950 119661357 Tigger2a 444 - 2 394 107239 16 4 5 10 43 33 153 5 0 16 1 0 58 6 0 5 2 8 88 chain 4770 chr10 135534747 + 119676130 119676202 Tigger3b 1229 + 198 276 197700 54 7 13 11 chain 12599 chr10 135534747 + 119677388 119677685 THE1B 368 + 0 307 149839 47 80 88 34 1 0 12 1 0 17 13 20 14 1 0 10 1 0 29 1 0 36 chain 24412 chr10 135534747 + 119691610 119691894 AluY 311 + 16 300 108018 284 chain 25311 chr10 135534747 + 119744436 119744796 THE1A 353 + 0 353 103167 13 2 0 34 0 1 31 0 1 14 1 0 15 31 25 219 chain 22357 chr10 135534747 + 119826356 119826603 L1PA5 6144 - 1291 1539 116990 230 0 1 17 chain 114381 chr10 135534747 + 119826603 119827875 L1PA5 6144 + 4861 6135 32973 1031 0 1 108 0 1 133 chain 17240 chr10 135534747 + 119859816 119860024 L1PA7 6471 - 8 226 134954 94 0 8 39 0 1 12 0 1 63 chain 23538 chr10 135534747 + 119897911 119898217 AluSg7 307 - 14 307 112917 7 13 0 286 chain 9835 chr10 135534747 + 119910404 119910573 Tigger4a 237 - 0 178 161426 32 11 29 11 17 0 43 0 8 55 chain 5277 chr10 135534747 + 119922682 119922743 MER41B 635 + 483 545 192242 25 0 1 36 chain 6837 chr10 135534747 + 119939752 119939973 MLT1A0 366 - 44 264 178680 7 0 2 61 122 119 31 chain 18262 chr10 135534747 + 119939974 119940236 L1PA6 6164 - 2 244 132171 13 3 0 29 28 11 189 chain 19906 chr10 135534747 + 119945712 119946064 THE1B 368 + 0 358 127460 103 13 14 59 0 2 6 24 16 9 1 5 10 12 20 62 8 7 45 chain 6933 chr10 135534747 + 119947332 119947428 MER58A 224 + 50 147 177946 68 1 2 27 chain 27917 chr10 135534747 + 119979204 119979511 AluYk12 309 + 0 305 93293 123 2 0 182 chain 6723 chr10 135534747 + 120023988 120024061 SVA_E 1901 - 22 95 179518 73 chain 5323 chr10 135534747 + 120129358 120129432 LTR33 499 - 17 90 191788 29 1 0 44 chain 4303 chr10 135534747 + 120178287 120178428 MER20 218 - 58 198 203179 17 77 76 47 chain 35613 chr10 135534747 + 120179666 120180082 L1PA5 6144 + 5700 6120 75396 41 0 4 375 chain 14051 chr10 135534747 + 120193460 120193616 L1HS 6032 - 4125 4281 144376 156 chain 49400 chr10 135534747 + 120193616 120194153 L1PA2 6032 + 5495 6032 59451 537 chain 4079 chr10 135534747 + 120231979 120232024 MER5A1 166 + 73 118 206210 45 chain 49207 chr10 135534747 + 120240258 120240885 L1PA8 5853 + 5232 5853 59586 332 1 0 46 2 0 68 12 10 11 0 1 40 2 1 19 1 0 93 chain 122384 chr10 135534747 + 120248805 120250362 THE1B-int 1605 + 0 1598 30255 12 8 10 51 0 1 14 1 0 295 0 6 42 0 25 232 13 9 133 0 1 251 0 2 190 0 3 76 0 1 9 0 1 62 0 4 168 chain 21564 chr10 135534747 + 120250369 120250704 THE1B 368 + 0 368 121908 43 1 16 110 4 3 26 33 53 42 2 1 74 chain 28017 chr10 135534747 + 120257444 120257799 THE1A 353 + 0 353 92942 111 7 6 84 1 0 152 chain 21555 chr10 135534747 + 120272191 120273613 AluY 311 + 18 288 121943 91 1152 0 179 chain 9053 chr10 135534747 + 120272303 120272408 AluY 311 + 126 230 165295 78 1 0 26 chain 6564 chr10 135534747 + 120273362 120273434 AluY 311 + 36 108 180748 72 chain 4797 chr10 135534747 + 120284731 120284794 MER8 282 - 220 282 197388 4 1 0 58 chain 3785 chr10 135534747 + 120285819 120285863 MSTD 398 + 325 369 210586 44 chain 25110 chr10 135534747 + 120289381 120289673 AluSx 319 + 10 302 104230 292 chain 26399 chr10 135534747 + 120293319 120293667 L1PA8 5853 + 5507 5847 98413 57 1 0 22 0 1 21 2 0 74 1 0 5 2 0 53 2 1 19 1 0 63 1 0 24 chain 56762 chr10 135534747 + 120359054 120359800 LTR17 781 - 10 781 54678 39 18 36 190 14 25 154 1 0 148 1 0 23 1 0 100 1 0 56 chain 118618 chr10 135534747 + 120371953 120373423 HERVK9-int 4720 - 3224 4684 31571 1006 4 1 328 40 37 66 1 0 4 8 5 13 chain 43762 chr10 135534747 + 120374744 120375253 MER9a2 513 - 0 513 64496 55 0 2 39 0 1 32 0 1 383 chain 35524 chr10 135534747 + 120384529 120385058 MER41C 542 + 0 542 75515 90 5 6 88 19 22 19 0 3 83 4 5 17 10 9 54 0 4 102 1 3 37 chain 26888 chr10 135534747 + 120390512 120390905 MLT2A1 477 - 83 477 96677 173 6 5 5 0 1 10 8 5 21 14 18 13 1 2 133 1 0 8 chain 89236 chr10 135534747 + 120399538 120400596 MER11C 1089 - 15 1089 39915 9 1 2 325 0 1 45 0 4 371 0 4 62 0 1 18 0 5 227 chain 86131 chr10 135534747 + 120404426 120405834 L1PB 1623 - 37 1413 41109 11 2 0 22 179 147 11 21 0 6 0 6 317 0 4 191 0 1 73 0 3 77 0 1 6 1 0 56 0 4 28 8 12 124 2 1 82 10 12 53 0 1 67 2 1 59 chain 539619 chr10 135534747 + 120405842 120412250 L1PA7 6471 - 1 6471 2876 589 0 4 156 0 3 89 0 6 145 0 2 85 1 0 3 1 0 279 0 2 42 1 0 372 0 2 6 0 12 108 0 1 253 0 12 166 0 1 575 4 8 52 1 0 11 3 2 851 0 2 467 0 4 306 13 21 437 0 3 176 1 5 726 1 0 83 2 0 403 chain 393943 chr10 135534747 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+ 120449555 120449843 AluYb8 318 + 21 312 102523 27 12 15 249 chain 6516 chr10 135534747 + 120456166 120456246 MER30 238 - 158 238 181116 80 chain 25502 chr10 135534747 + 120475466 120475772 AluY 311 + 0 311 102214 87 0 4 35 1 2 183 chain 3772 chr10 135534747 + 120495847 120495896 Tigger3 1187 + 684 732 210790 18 1 0 30 chain 21559 chr10 135534747 + 120504798 120505083 AluSx 319 + 11 293 121927 41 9 5 129 5 6 101 chain 123015 chr10 135534747 + 120518647 120520224 LTR12C 1709 - 0 1709 30042 167 0 102 212 11 4 106 3 1 5 1 0 235 0 40 545 0 25 9 38 13 245 chain 35927 chr10 135534747 + 120528872 120529686 LTR10A 586 + 46 572 74985 28 5 6 21 2 23 17 1 0 61 315 8 89 5 4 262 1 0 7 chain 9556 chr10 135534747 + 120537180 120537342 LOR1b 457 - 303 457 162805 11 2 0 91 33 26 10 0 1 15 chain 124646 chr10 135534747 + 120542230 120543736 LTR12C 1709 + 0 1709 29492 102 7 6 201 0 1 4 1 0 498 0 200 99 1 0 6 2 0 107 0 4 248 0 3 230 chain 199156 chr10 135534747 + 120547544 120550248 L1PB2 3958 + 1147 3838 19272 61 2 1 42 10 0 4 3 0 159 0 10 44 0 3 83 20 21 19 1 0 27 1 15 48 1 5 59 0 1 5 2 1 109 10 9 327 0 1 175 16 5 98 21 13 432 1 0 279 2 4 99 3 1 54 1 0 59 1 0 19 2 0 17 7 5 31 1 0 28 0 1 19 1 0 77 1 0 64 1 0 94 1 0 63 chain 54467 chr10 135534747 + 120554648 120555260 SVA_C 1631 + 959 1627 56053 17 1 46 452 1 12 141 chain 151011 chr10 135534747 + 120555291 120557071 L1PA7 6471 + 4693 6469 24477 262 2 1 666 2 0 32 3 6 476 0 1 324 5 0 8 chain 23580 chr10 135534747 + 120579388 120579678 AluSp 311 + 10 291 112686 67 8 0 101 1 0 113 chain 5164 chr10 135534747 + 120602823 120602916 MER52D 1964 + 1116 1207 193412 35 23 21 35 chain 143579 chr10 135534747 + 120621874 120623583 L1PA6 6164 - 6 1709 25547 145 28 16 676 0 6 464 0 1 207 1 0 188 chain 91021 chr10 135534747 + 120623583 120624620 L1PA6 6164 + 3402 4447 39282 957 1 9 79 chain 5130 chr10 135534747 + 120626448 120626532 MER41B 635 - 82 152 193786 36 14 0 34 chain 133502 chr10 135534747 + 120654431 120655939 SVA_C 1631 + 0 1630 27318 12 0 28 17 13 3 135 1 5 637 0 88 78 0 1 151 0 11 464 chain 99150 chr10 135534747 + 120656006 120657769 HERVH-int 3825 + 2526 3825 36988 168 1 0 86 0 1 19 11 0 170 519 0 46 1 0 219 4 56 7 1 0 55 13 14 194 0 1 4 1 0 124 0 15 120 chain 44803 chr10 135534747 + 120656467 120656980 MER9a1 513 + 0 513 63286 513 chain 6616 chr10 135534747 + 120694119 120694222 L1MD1 2063 + 65 153 180329 16 15 0 72 chain 37846 chr10 135534747 + 120721871 120722418 MER41A 554 + 0 554 72346 92 0 1 120 10 8 14 9 12 157 0 2 50 23 25 10 0 1 62 chain 26885 chr10 135534747 + 120723123 120723542 LTR7B 505 - 14 505 96688 27 24 23 79 1 0 47 5 93 27 35 11 69 0 10 105 chain 4157 chr10 135534747 + 120737338 120737385 MIRc 230 - 112 159 205129 47 chain 5738 chr10 135534747 + 120765303 120765377 MADE1 96 - 0 90 187750 51 0 16 23 chain 11375 chr10 135534747 + 120813248 120813429 Tigger1 2417 - 1446 1629 154799 10 1 0 83 27 30 60 chain 5689 chr10 135534747 + 120827689 120827758 U3 216 + 0 69 188206 69 chain 26998 chr10 135534747 + 120848473 120848784 AluYk4 311 + 0 311 96292 311 chain 3844 chr10 135534747 + 120860826 120860911 MER68 562 + 470 554 209728 36 29 28 20 chain 25932 chr10 135534747 + 120874894 120875174 AluYa5 310 - 6 284 100296 178 2 0 100 chain 5158 chr10 135534747 + 120884897 120884984 L1MA3 4352 - 49 128 193464 15 1 0 6 1 0 23 2 0 23 4 0 12 chain 20398 chr10 135534747 + 120923332 120923576 AluSp 311 + 63 306 125899 48 1 0 195 chain 165112 chr10 135534747 + 120940815 120942736 SVA_D 2077 - 0 2062 22640 8 2 0 308 1 0 316 1 0 44 10 0 5 0 8 174 0 1 19 50 0 107 0 184 724 0 2 116 0 8 11 0 2 25 chain 1735 chr10 135534747 + 120941703 120941753 SVA_D 2077 - 707 756 120352 19 1 0 30 chain 6807 chr10 135534747 + 120978898 120979028 Tigger4a 237 + 102 237 178902 36 4 8 25 22 23 43 chain 41077 chr10 135534747 + 120991244 120991926 L1MA5A 2387 + 1644 2295 67803 134 0 2 201 1 0 51 2 1 11 43 45 19 1 0 44 7 5 30 2 0 6 0 1 24 3 0 14 43 18 26 7 6 13 chain 26267 chr10 135534747 + 120992000 120992350 THE1B 368 + 0 368 98946 40 0 15 27 0 1 25 1 0 31 0 4 23 1 0 3 1 0 29 0 2 96 1 0 72 chain 54907 chr10 135534747 + 120999050 120999694 L1PA7 6471 - 6 663 55765 227 1 14 416 chain 27862 chr10 135534747 + 121018567 121018875 AluYk4 311 - 3 311 93486 308 chain 139748 chr10 135534747 + 121019923 121021456 SVA_D 2077 - 5 2071 26179 530 0 225 158 0 269 208 0 39 637 chain 50033 chr10 135534747 + 121035639 121036193 L1PA3long 6157 - 8 579 58997 164 0 17 390 chain 34140 chr10 135534747 + 121054869 121055442 L1PB1 5432 + 4855 5424 77426 177 0 16 4 1 0 51 3 0 11 1 0 24 1 0 8 1 0 10 6 2 9 2 0 53 2 1 16 1 0 43 1 0 15 3 0 14 32 27 10 2 0 24 1 0 21 1 0 4 0 9 16 1 0 4 chain 14978 chr10 135534747 + 121059342 121059512 L1PA5 6144 - 16 188 141386 133 0 2 37 chain 23888 chr10 135534747 + 121103694 121103967 L1PA5 6144 - 1 274 110971 273 chain 15141 chr10 135534747 + 121114470 121114746 MER2 342 - 52 328 140940 37 4 7 15 9 10 109 3 0 25 43 42 31 chain 8168 chr10 135534747 + 121163927 121164031 L1MB7 1623 - 634 739 170128 9 0 1 95 chain 117087 chr10 135534747 + 121193735 121195269 THE1B-int 1605 - 5 1567 32100 106 5 1 219 0 1 36 1 0 429 17 27 35 11 4 286 2 27 312 1 4 42 1 2 31 chain 18245 chr10 135534747 + 121195310 121195668 THE1B 368 - 2 368 132219 123 11 19 10 39 37 20 5 6 16 23 24 28 1 2 33 0 1 34 2 0 13 chain 26269 chr10 135534747 + 121222702 121223049 THE1B 368 + 13 368 98934 21 0 5 130 1 0 32 0 1 7 1 5 16 1 0 138 chain 7636 chr10 135534747 + 121236886 121237079 L1MD1 2063 - 223 412 173313 15 14 10 30 8 12 32 1 0 18 37 34 38 chain 24159 chr10 135534747 + 121242483 121242865 THE1D 372 + 0 372 109436 75 19 0 60 1 5 48 9 6 12 13 15 18 0 6 127 chain 10967 chr10 135534747 + 121291948 121292080 AluJb 308 + 4 136 156327 132 chain 24374 chr10 135534747 + 121294125 121294426 AluSc 308 + 5 305 108227 126 1 0 174 chain 128367 chr10 135534747 + 121318456 121319981 SVA_C 1631 - 23 1630 28482 411 1 4 174 0 137 196 75 0 134 0 2 511 6 21 17 chain 6802 chr10 135534747 + 121319238 121319313 SVA_C 1631 - 985 1061 118055 38 0 1 37 chain 21683 chr10 135534747 + 121359037 121359363 THE1A 353 + 0 353 121455 15 2 0 12 0 1 19 0 1 48 1 0 15 0 2 6 17 15 78 2 30 111 chain 3912 chr10 135534747 + 121365167 121365212 MLT1A0 366 + 273 318 208677 45 chain 19779 chr10 135534747 + 121367020 121367261 AluSx1 309 + 65 306 127875 241 chain 10187 chr10 135534747 + 121373872 121374017 THE1D 372 + 226 372 159688 23 0 1 55 11 12 23 1 0 32 chain 22807 chr10 135534747 + 121397536 121397831 AluSq4 311 + 11 310 116544 120 13 11 7 0 3 86 0 3 69 chain 13765 chr10 135534747 + 121405391 121405571 LTR10E 629 - 449 629 145384 11 3 5 74 1 0 72 1 0 18 chain 44075 chr10 135534747 + 121447376 121447928 MER41A 554 - 0 554 64130 294 7 8 159 0 1 92 chain 31678 chr10 135534747 + 121448689 121449076 MER41A 554 + 13 412 81361 79 0 1 131 0 11 177 chain 25956 chr10 135534747 + 121470488 121470830 THE1B 368 + 0 368 100185 40 0 15 14 0 14 83 8 6 60 1 0 136 chain 158849 chr10 135534747 + 121480897 121482605 SVA_F 1814 + 10 1814 23480 926 0 1 10 0 15 49 0 78 262 0 1 446 0 1 15 chain 25571 chr10 135534747 + 121490304 121490598 AluSc 308 - 15 308 101868 167 1 0 126 chain 7621 chr10 135534747 + 121524745 121524876 Tigger2a 444 + 238 377 173407 37 1 5 37 15 19 41 chain 11714 chr10 135534747 + 121539240 121539389 Tigger3b 1229 - 461 609 153412 70 2 1 77 chain 171805 chr10 135534747 + 121553537 121555624 SVA_D 2077 - 6 2077 21843 310 1 0 316 0 1 55 0 1 27 5 4 49 0 1 8 66 37 4 0 1 222 2 0 87 45 5 26 3 1 13 2 0 138 0 40 664 0 25 17 8 0 19 chain 2772 chr10 135534747 + 121554308 121554353 SVA_D 2077 - 855 896 129104 20 8 4 17 chain 2031 chr10 135534747 + 121554689 121554734 SVA_D 2077 - 775 820 81791 45 chain 6768 chr10 135534747 + 121593577 121594035 L1M4c 1769 + 649 1123 179185 17 150 146 38 13 15 15 1 0 16 3 13 14 157 166 34 chain 18742 chr10 135534747 + 121615470 121615701 AluSc 308 + 16 248 130844 115 5 6 111 chain 16302 chr10 135534747 + 121634284 121634490 MER47A 366 - 128 334 137477 206 chain 3661 chr10 135534747 + 121634574 121634620 MER34A1 583 - 525 573 212571 38 0 2 8 chain 3525 chr10 135534747 + 121637123 121637180 MSTD 398 + 325 388 214960 8 0 4 26 3 5 20 chain 15588 chr10 135534747 + 121641284 121642279 MSTB 430 - 31 416 139618 93 0 5 10 1 0 20 773 159 98 chain 26081 chr10 135534747 + 121643203 121643574 LTR12 884 + 251 860 99705 89 1 2 36 2 0 66 2 1 123 8 248 44 chain 385197 chr10 135534747 + 121643663 121648396 HERV9-int 5642 + 36 4824 10599 69 14 19 49 0 1 426 21 20 96 6 0 14 0 3 55 20 19 56 0 4 17 0 85 134 81 0 8 1 0 134 0 1 335 1 0 4 4 5 271 0 37 641 0 1 204 6 7 92 2 4 386 2 1 574 0 1 178 1 0 54 1 0 562 0 7 214 chain 42330 chr10 135534747 + 121649812 121650370 LTR12 884 + 0 884 66232 25 1 0 239 8 99 13 2 0 161 0 2 17 0 236 92 chain 4353 chr10 135534747 + 121672865 121672935 MER58B 340 - 13 87 202555 25 4 9 31 1 0 9 chain 24529 chr10 135534747 + 121703583 121703962 THE1D 372 + 8 372 107383 99 0 1 58 0 4 8 9 17 48 31 4 93 6 5 27 chain 27992 chr10 135534747 + 121709325 121709678 THE1C 375 + 20 375 93024 114 0 4 12 4 3 197 1 0 25 chain 23530 chr10 135534747 + 121718493 121718763 AluY 311 + 0 276 112958 42 0 4 31 0 1 54 0 1 143 chain 2940 chr10 135534747 + 121728401 121728436 L1MD3 1191 - 228 263 226329 35 chain 35769 chr10 135534747 + 121731859 121732325 LTR2 463 + 0 463 75175 288 2 0 92 1 2 29 1 0 28 1 0 24 chain 26690 chr10 135534747 + 121740409 121740822 MER83 447 - 47 446 97350 65 69 30 175 0 26 46 1 0 57 chain 22368 chr10 135534747 + 121743675 121744181 L1PREC2 3366 - 332 791 118638 18 12 10 28 29 15 11 4 1 22 108 83 39 7 6 43 12 10 173 chain 264007 chr10 135534747 + 121744621 121747567 L1PA4 6152 - 1 2955 15485 20 1 0 823 0 4 952 6 10 401 1 2 742 chain 5718 chr10 135534747 + 121758067 121758177 L1PB 1623 - 196 312 187945 29 8 13 28 12 13 33 chain 2760 chr10 135534747 + 121770178 121770237 MLT1C 463 - 304 357 229326 25 1 0 5 11 5 12 0 1 5 chain 5812 chr10 135534747 + 121777188 121777257 L1MB5 1630 - 238 307 187022 69 chain 28290 chr10 135534747 + 121787890 121788243 THE1B 368 + 5 368 91982 35 0 15 117 3 1 118 3 0 77 chain 5112 chr10 135534747 + 121792454 121792511 LOR1a 498 - 203 260 193947 57 chain 3644 chr10 135534747 + 121797234 121797277 MIRb 242 - 121 164 212893 43 chain 41407 chr10 135534747 + 121804946 121806438 Tigger3b 1229 - 354 1206 67408 100 3 0 9 1 0 35 1 0 144 1 10 230 913 269 55 chain 41398 chr10 135534747 + 121806955 121807432 L1PA7 6471 + 5983 6460 67415 477 chain 21127 chr10 135534747 + 121809729 121810119 L1PB3 3668 + 3217 3566 123466 73 1 0 20 24 33 36 0 1 10 17 5 74 0 1 8 40 4 19 1 0 27 3 1 37 chain 2779 chr10 135534747 + 121814315 121814352 MER57D 437 + 400 437 229054 37 chain 42573 chr10 135534747 + 121815538 121816681 L1PREC2 3366 + 2255 3048 65937 99 2 1 8 0 6 111 8 7 238 345 27 39 136 120 10 3 1 25 40 24 35 6 4 38 chain 20221 chr10 135534747 + 121843833 121844195 THE1B 368 + 0 368 126467 111 23 24 40 35 29 6 0 4 18 0 8 66 18 17 45 chain 4152 chr10 135534747 + 121847459 121847512 MER58B 340 + 0 53 205223 53 chain 10867 chr10 135534747 + 121858106 121858235 MER85 139 - 0 139 156707 40 0 10 89 chain 24802 chr10 135534747 + 121866126 121866540 LTR7B 505 - 14 505 105881 37 14 13 88 4 45 18 6 5 33 13 81 47 46 16 108 chain 18667 chr10 135534747 + 121867007 121867277 L1PA16 3655 + 3301 3578 131036 58 6 12 30 12 13 164 chain 39691 chr10 135534747 + 121869102 121869549 L1PA5 6144 - 0 448 69765 154 0 1 293 chain 30723 chr10 135534747 + 121870510 121870849 L1PA4 6152 - 9 348 82996 339 chain 85240 chr10 135534747 + 121877941 121879048 L1PA8A 6298 + 5168 6277 41442 316 1 0 58 0 1 378 0 1 232 73 74 49 chain 11778 chr10 135534747 + 121884269 121884576 L1MC3 1789 - 416 689 153141 39 131 98 7 2 0 24 0 1 104 chain 163753 chr10 135534747 + 121884648 121886974 L1PA10 4194 - 1760 4018 22840 547 1 3 42 3 0 865 10 12 481 4 2 75 1 0 4 2 0 9 1 0 12 11 0 12 12 7 7 1 0 21 2 0 21 1 0 8 37 12 7 1 0 16 33 29 10 2 0 9 11 7 9 2 0 8 3 0 10 2 0 13 chain 375650 chr10 135534747 + 121909097 121913821 L1PA7 6471 - 6 4450 10898 709 1 0 127 0 4 1081 9 0 338 0 1 196 1 0 318 8 1 425 0 1 109 278 0 50 1 5 184 0 3 47 0 2 223 0 1 39 0 1 5 1 0 18 0 1 484 1 0 71 chain 20023 chr10 135534747 + 121915227 121915466 L1P3 4156 + 3 242 127069 239 chain 7930 chr10 135534747 + 121923940 121924030 L1PA8 5853 + 5763 5853 171442 90 chain 29283 chr10 135534747 + 121951016 121951384 THE1C 375 - 0 370 87645 26 1 0 203 0 4 98 12 11 28 chain 15308 chr10 135534747 + 121956639 121956830 Tigger1 2417 - 1926 2117 140471 191 chain 2829 chr10 135534747 + 121972366 121972396 MLT1I 406 + 299 329 228244 30 chain 6189 chr10 135534747 + 121973533 121973606 Cheshire 1285 - 753 826 183666 73 chain 142648 chr10 135534747 + 121973996 121975597 SVA_D 2077 - 18 2071 25706 653 0 50 14 0 2 25 0 1 28 3 399 255 0 1 574 2 1 11 4 7 32 chain 24930 chr10 135534747 + 121976085 121976374 AluSp 311 - 13 301 105161 121 1 0 167 chain 542059 chr10 135534747 + 121993818 121999837 L1PA3long 6157 - 5 6153 2492 825 1 2 3006 1 0 1412 12 140 282 1 2 64 1 0 264 1 2 149 chain 2934 chr10 135534747 + 122002766 122002809 MADE2 80 + 12 56 226431 21 2 3 20 chain 3780 chr10 135534747 + 122011116 122011157 LTR12C 1709 - 992 1033 210666 41 chain 8184 chr10 135534747 + 122011252 122011353 LTR12C 1709 - 654 755 170048 101 chain 12927 chr10 135534747 + 122016389 122016592 L1PA8 5853 - 0 219 148520 46 0 19 16 13 12 19 2 1 61 1 0 45 chain 32344 chr10 135534747 + 122058640 122059048 MER51B 395 + 0 395 80282 40 13 0 202 1 0 36 0 1 116 chain 6775 chr10 135534747 + 122071124 122071286 MER58A 224 + 43 207 179146 11 0 1 65 17 17 10 35 36 24 chain 19559 chr10 135534747 + 122072167 122072455 THE1B 368 + 77 367 128496 92 1 0 11 19 20 10 0 4 18 1 0 10 1 0 125 chain 38155 chr10 135534747 + 122103697 122104163 LTR3A 482 - 0 482 71903 273 0 14 72 0 1 72 0 1 49 chain 119165 chr10 135534747 + 122108705 122110482 L1M1 2793 + 853 2682 31348 40 5 3 5 1 0 102 1 0 42 10 9 61 1 11 47 0 2 7 1 0 87 16 49 120 0 1 89 9 11 17 0 5 147 4 14 98 1 0 63 2 0 50 9 11 48 8 11 91 0 3 7 1 4 112 4 7 83 2 1 28 0 2 93 16 0 73 3 4 50 4 0 63 14 10 5 0 3 31 0 3 6 chain 6021 chr10 135534747 + 122119354 122119692 MLT1A 405 - 16 380 185046 55 242 269 10 1 0 30 chain 30529 chr10 135534747 + 122119725 122120150 L1PA8 5853 + 5436 5853 83372 128 1 0 44 9 7 10 2 0 52 3 2 14 10 9 38 2 1 19 1 0 14 0 1 78 chain 18145 chr10 135534747 + 122139866 122140196 THE1B 368 + 0 368 132475 44 51 66 62 3 1 95 7 20 5 1 0 25 4 17 33 chain 12390 chr10 135534747 + 122174015 122174150 L1PA3long 6157 - 258 393 150669 135 chain 24222 chr10 135534747 + 122174150 122174412 L1PA3long 6157 + 5895 6157 109080 262 chain 3172 chr10 135534747 + 122196336 122196373 MLT1K 546 - 337 374 221518 37 chain 51640 chr10 135534747 + 122199985 122200547 L1PA3long 6157 - 700 1262 57870 562 chain 64139 chr10 135534747 + 122200547 122201251 L1PA3long 6157 + 5452 6156 50945 704 chain 13218 chr10 135534747 + 122202959 122203167 L1PA8 5853 + 5646 5853 147399 22 14 15 57 2 1 15 6 5 92 chain 537082 chr10 135534747 + 122204587 122210718 L1PA5 6144 + 0 6141 3302 1415 0 5 723 1 0 1027 1 0 103 6 7 77 1 12 185 0 1 253 0 12 1199 22 0 348 3 5 314 0 2 453 chain 38690 chr10 135534747 + 122241633 122242127 THE1B-int 1605 + 0 518 71163 350 9 8 69 4 29 62 chain 40005 chr10 135534747 + 122242420 122242929 MLT2A2 560 + 51 560 69312 313 0 1 137 2 1 57 chain 24651 chr10 135534747 + 122263686 122264171 LTR10E 629 - 81 629 106718 18 1 0 153 1 0 126 156 222 18 1 0 11 chain 5217 chr10 135534747 + 122288613 122288691 MER20 218 + 0 78 192850 11 4 6 11 2 0 50 chain 39363 chr10 135534747 + 122291436 122291886 L1PA7 6471 - 13 462 70230 6 1 0 443 chain 42635 chr10 135534747 + 122305246 122305783 MLT2A2 560 + 4 554 65856 307 0 1 87 5 17 138 chain 37216 chr10 135534747 + 122307899 122308524 L1PA15 4387 - 38 640 73216 20 5 0 14 3 1 44 6 3 50 2 1 9 9 6 16 2 1 53 1 0 26 2 1 62 8 11 99 1 0 42 2 0 61 4 0 9 9 7 66 chain 30427 chr10 135534747 + 122323030 122323348 AluYb8 318 + 0 318 83599 318 chain 24606 chr10 135534747 + 122362085 122362381 MLT2A1 477 + 0 300 106962 169 1 5 126 chain 88585 chr10 135534747 + 122378688 122379957 HSMAR1 1287 + 8 1287 40152 113 0 4 38 1 12 255 1 0 134 11 6 29 70 73 65 2 0 49 0 1 271 1 0 14 5 6 49 12 12 108 1 0 40 chain 11506 chr10 135534747 + 122381786 122382015 THE1B 368 + 121 355 154276 46 71 77 64 1 0 47 chain 28983 chr10 135534747 + 122385320 122385695 THE1C 375 - 0 375 89076 25 1 0 168 4 5 177 chain 24108 chr10 135534747 + 122399518 122399802 AluSp 311 + 4 287 109700 48 2 1 234 chain 29122 chr10 135534747 + 122409892 122410197 AluYb8 318 + 0 305 88448 305 chain 39057 chr10 135534747 + 122424160 122424723 L1PA8 5853 + 5321 5853 70654 243 1 0 44 2 0 27 3 0 44 1 0 9 5 4 48 25 23 22 22 0 61 0 1 6 chain 284718 chr10 135534747 + 122431493 122435401 L1PA10 4194 + 223 4161 14369 9 2 0 9 1 0 9 1 0 17 7 5 14 78 49 17 1 0 11 1 0 7 1 0 10 1 0 15 7 0 8 1 0 79 11 8 328 0 1 326 7 8 18 13 9 188 0 1 398 1 0 4 3 4 46 1 0 77 2 5 41 0 1 41 10 12 200 1 2 19 0 3 5 6 4 231 1 0 161 0 1 47 1 5 113 0 1 167 7 0 455 4 88 201 1 0 4 0 1 50 0 2 96 0 2 152 9 1 107 3 0 34 1 0 11 chain 76716 chr10 135534747 + 122487681 122488524 L1PA4 6152 - 1 844 45112 4 0 1 774 1 0 64 chain 22696 chr10 135534747 + 122490294 122490536 AluYg6 310 - 1 243 117095 242 chain 14735 chr10 135534747 + 122494954 122495251 MER1B 344 + 0 310 142156 14 77 78 32 0 1 133 5 19 7 3 0 26 chain 38949 chr10 135534747 + 122501978 122502507 MER1A 529 + 0 529 70804 57 10 12 126 4 5 252 12 9 68 chain 20132 chr10 135534747 + 122509368 122509680 THE1C 375 + 14 325 126740 71 0 1 55 1 5 39 5 4 37 6 8 9 6 0 24 8 7 51 chain 23826 chr10 135534747 + 122521851 122522133 AluSg 306 + 11 293 111329 282 chain 9030 chr10 135534747 + 122531800 122531904 L1PA5 6144 - 12 116 165437 104 chain 20076 chr10 135534747 + 122531904 122532143 L1P1 4361 + 3526 3768 126894 154 0 4 37 1 0 47 chain 25235 chr10 135534747 + 122544773 122545097 THE1B 368 + 0 328 103564 138 0 4 30 2 1 63 0 1 91 chain 9144 chr10 135534747 + 122547326 122547469 L1PA8A 6298 - 7 149 164840 97 2 3 6 3 0 13 5 6 17 chain 117406 chr10 135534747 + 122557487 122558843 SVA_B 1603 + 56 1603 31991 59 2 1 80 1 0 591 0 122 18 2 0 42 0 39 19 0 40 50 5 0 63 1 0 423 chain 34299 chr10 135534747 + 122561420 122561869 MER4A1 472 - 0 472 77213 217 27 48 191 0 2 14 chain 24699 chr10 135534747 + 122599805 122600112 AluY 311 + 3 298 106440 129 0 1 156 13 0 9 chain 39610 chr10 135534747 + 122604443 122604915 LTR7Y 441 + 0 441 69879 165 31 0 276 chain 291585 chr10 135534747 + 122604915 122608388 HERVH-int 3825 + 0 3825 13926 49 0 2 208 0 5 225 2 0 2 0 58 21 1 0 7 1 0 27 6 56 37 1 0 13 22 1 44 0 1 7 0 2 14 0 3 670 0 2 231 4 31 56 0 1 242 0 10 1045 9 11 39 8 218 13 6 0 7 3 9 225 3 8 225 chain 37872 chr10 135534747 + 122609638 122610073 LTR7Y 441 + 0 441 72317 38 0 2 237 0 2 64 0 2 96 chain 26479 chr10 135534747 + 122634323 122634681 L1PA8 5853 - 0 354 98128 93 1 0 19 2 1 44 5 4 13 2 1 70 2 0 44 1 0 57 0 3 5 chain 113146 chr10 135534747 + 122652528 122653762 L1PA4 6152 - 1 1235 33335 1234 chain 41713 chr10 135534747 + 122669480 122670017 LTR12 884 - 134 884 67013 25 0 103 206 0 1 4 1 0 11 0 22 16 0 25 64 0 64 184 1 0 25 chain 546258 chr10 135534747 + 122670473 122676492 L1PA3long 6157 + 0 6156 1913 152 0 1 211 0 1 403 8 136 345 1 0 708 0 1 436 0 5 2061 0 3 1689 1 0 4 chain 276619 chr10 135534747 + 122678886 122681888 L1PA2 6032 + 3029 6032 14835 18 3 4 697 1 0 8 0 1 2275 chain 106837 chr10 135534747 + 122683153 122684479 LTR12C 1709 + 0 1709 35024 650 0 278 65 0 2 52 0 1 62 1 0 7 3 1 106 0 4 39 1 0 173 0 1 22 38 9 4 1 0 39 0 131 63 chain 88687 chr10 135534747 + 122707492 122708489 L1PA4 6152 - 0 1010 40115 6 0 4 250 1 0 590 0 4 18 0 3 113 0 3 19 chain 5590 chr10 135534747 + 122725027 122725096 MER5A1 166 + 35 105 189177 52 0 1 17 chain 27841 chr10 135534747 + 122753027 122753323 AluYa5 310 + 8 304 93557 296 chain 12500 chr10 135534747 + 122763376 122763550 L1PB4 2604 - 38 214 150239 14 1 0 18 0 2 125 1 2 15 chain 45321 chr10 135534747 + 122788598 122789101 L1PA4 6152 - 13 516 62693 503 chain 145337 chr10 135534747 + 122793590 122795421 LTR12C 1709 - 0 1709 25276 167 1 0 314 0 4 107 2 0 6 1 0 197 117 0 77 1 0 729 8 4 104 chain 9480 chr10 135534747 + 122794385 122794490 LTR12C 1709 - 954 1059 135883 105 chain 28870 chr10 135534747 + 122827705 122828012 AluYk11 308 + 0 307 89586 307 chain 9129 chr10 135534747 + 122833021 122833119 L1PA2 6032 + 5931 6029 164915 98 chain 8608 chr10 135534747 + 122854002 122854110 L1PA8 5853 - 0 107 167680 92 2 1 14 chain 11867 chr10 135534747 + 122867238 122867593 MLT2B4 540 + 0 361 152756 136 131 191 14 54 0 20 chain 43029 chr10 135534747 + 122876101 122876826 L1PA15 4387 + 3651 4352 65387 122 10 8 32 2 0 17 12 7 53 2 0 43 4 3 17 7 9 144 1 0 24 6 5 18 5 6 26 1 0 21 4 0 11 1 0 46 10 7 11 6 9 26 2 0 13 5 0 23 chain 5252 chr10 135534747 + 122899756 122899834 MER58A 224 + 31 110 192499 13 5 6 60 chain 181692 chr10 135534747 + 122902359 122907025 L1PA10 4194 - 1363 4019 20824 64 0 1 83 11 16 43 0 1 43 1 12 109 2036 52 83 1 0 4 0 1 28 0 2 59 0 4 29 5 1 88 1 0 83 6 10 181 0 4 6 6 7 480 9 17 428 2 3 405 2 0 71 1 0 5 0 1 4 4 1 7 7 0 13 8 0 7 0 3 9 1 0 10 8 7 11 2 0 22 1 0 6 49 23 12 3 1 21 0 1 8 1 0 9 2 0 9 31 22 12 2 0 14 chain 119645 chr10 135534747 + 122902784 122904391 THE1B-int 1605 - 0 1605 31162 42 0 1 168 5 6 93 0 1 535 16 15 64 1 0 74 0 1 93 5 10 51 38 21 88 0 9 27 1 0 306 chain 3490 chr10 135534747 + 122966231 122966298 Tigger2b_Pri 1066 - 998 1065 215518 16 0 2 5 13 11 33 chain 95042 chr10 135534747 + 122985798 122986872 L1PA5 6144 - 0 1075 38080 278 0 1 59 0 1 518 1 0 218 chain 40842 chr10 135534747 + 122994514 122994971 L1PA5 6144 - 12 469 68113 457 chain 7897 chr10 135534747 + 123003396 123003567 MER58A 224 - 0 174 171673 22 63 66 86 chain 24248 chr10 135534747 + 123008404 123008670 L1PA4 6152 - 1 268 108954 188 0 1 78 chain 28356 chr10 135534747 + 123038096 123038464 L1PA8 5853 + 5487 5849 91743 77 1 0 46 2 0 69 1 0 9 1 0 12 0 1 39 2 1 19 1 0 89 chain 5707 chr10 135534747 + 123046703 123046804 LTR45B 484 + 331 431 188047 32 1 2 18 9 8 16 1 0 24 chain 20763 chr10 135534747 + 123063287 123063540 AluY 311 + 29 279 124738 102 3 0 148 chain 4011 chr10 135534747 + 123088148 123088195 L1MB5 1630 - 739 786 207220 47 chain 57474 chr10 135534747 + 123103773 123104396 L1PA2 6032 - 4 627 54257 623 chain 12537 chr10 135534747 + 123123527 123123885 THE1B 368 + 0 368 150092 17 7 6 49 50 51 28 78 89 66 26 25 37 chain 90301 chr10 135534747 + 123124908 123126138 LTR12C 1709 + 0 1709 39535 256 13 14 7 0 4 8 3 0 12 0 1 36 14 57 69 1 0 7 8 5 39 1 2 45 11 12 11 0 4 61 0 278 143 0 47 99 7 11 72 1 3 136 0 101 79 7 6 84 chain 5045 chr10 135534747 + 123129443 123129509 MER20 218 + 0 66 194677 12 0 1 6 1 0 47 chain 110489 chr10 135534747 + 123141501 123142879 LTR12C 1709 + 0 1709 34076 47 0 1 28 0 1 65 0 6 149 0 1 40 0 43 269 0 278 184 1 0 5 6 4 103 0 4 71 5 7 321 1 0 9 1 0 73 chain 68532 chr10 135534747 + 123159539 123160316 L1PA5 6144 - 0 778 49023 333 1 0 339 0 2 104 chain 28796 chr10 135534747 + 123161388 123161774 MER57B1 401 + 9 401 89913 69 0 1 164 0 4 84 12 13 57 chain 7175 chr10 135534747 + 123168931 123169073 MER53 195 - 56 194 176237 14 2 0 17 37 35 72 chain 14682 chr10 135534747 + 123180536 123180701 L1PA4 6152 - 1 172 142314 23 0 6 142 chain 4222 chr10 135534747 + 123185929 123185976 LTR67B 553 + 52 99 204279 47 chain 17303 chr10 135534747 + 123211750 123211960 L1PA7 6471 - 6 217 134780 149 0 1 61 chain 4693 chr10 135534747 + 123267401 123267520 MER2 342 + 39 171 198594 29 51 64 39 chain 24114 chr10 135534747 + 123335417 123335707 AluSp 311 + 0 288 109674 77 2 0 211 chain 34912 chr10 135534747 + 123346442 123346979 L1PA14 3548 + 2953 3456 76324 47 2 0 5 2 0 109 15 0 17 2 0 5 7 6 110 1 0 54 0 1 20 2 0 4 1 0 12 5 1 35 4 2 12 1 0 3 1 0 18 1 0 42 chain 4405 chr10 135534747 + 123370427 123370540 MER53 195 - 11 108 201878 7 1 0 33 3 0 6 0 3 6 1 0 4 1 0 7 22 9 22 chain 75479 chr10 135534747 + 123411681 123412813 L1PB1 5432 + 4279 5399 45775 342 1 0 9 6 0 105 0 1 22 0 3 63 1 0 274 18 16 24 8 6 12 2 0 3 2 0 8 14 12 17 0 4 20 2 1 10 2 5 36 0 2 6 1 0 16 1 3 27 3 1 5 1 0 14 2 0 24 1 0 23 1 0 6 chain 6709 chr10 135534747 + 123423957 123424047 MLT1B 390 - 302 390 179615 67 2 0 21 chain 68751 chr10 135534747 + 123458945 123459756 L1PA7 6471 + 5668 6469 48922 346 11 1 454 chain 21390 chr10 135534747 + 123479778 123480076 THE1B 368 - 66 368 122545 60 1 0 12 7 6 10 0 4 10 1 0 4 0 4 23 1 0 169 chain 29376 chr10 135534747 + 123489185 123489494 AluYa5 310 - 1 310 87183 309 chain 23324 chr10 135534747 + 123586533 123586815 AluSc 308 - 15 297 114063 282 chain 21039 chr10 135534747 + 123588985 123589243 AluSg7 307 + 43 300 123770 161 6 5 91 chain 22072 chr10 135534747 + 123612619 123612896 AluY 311 + 8 302 119913 7 0 14 103 0 1 113 1 3 53 chain 8923 chr10 135534747 + 123617032 123617163 L1PA16 3655 + 3154 3290 166016 46 13 18 72 chain 27209 chr10 135534747 + 123618760 123619059 AluYa5 310 - 0 299 95566 299 chain 30175 chr10 135534747 + 123620926 123621266 L1PA3long 6157 + 5816 6149 84253 187 7 0 146 chain 7873 chr10 135534747 + 123657786 123657944 Tigger5 388 + 141 298 171856 84 48 47 26 chain 28587 chr10 135534747 + 123678299 123678810 LTR12 884 + 11 873 90796 23 21 11 11 6 51 8 1 0 24 11 0 7 11 118 7 17 0 30 0 4 10 1 0 21 1 2 40 2 0 175 0 236 84 chain 2543 chr10 135534747 + 123680748 123680826 L1PA16 3655 - 66 143 232562 12 17 14 13 12 14 24 chain 24736 chr10 135534747 + 123692694 123692982 AluSp 311 - 18 306 106243 288 chain 22527 chr10 135534747 + 123699526 123699889 THE1C 375 + 0 375 117903 87 0 1 20 7 6 59 56 69 108 1 0 25 chain 22463 chr10 135534747 + 123722134 123722408 AluSp 311 - 19 311 118179 222 0 18 52 chain 2732 chr10 135534747 + 123737432 123737463 LTR12C 1709 - 991 1022 223225 31 chain 2513 chr10 135534747 + 123737510 123737538 LTR12C 1709 - 872 900 210819 28 chain 12453 chr10 135534747 + 123737538 123737814 LTR12C 1709 - 534 775 150452 16 30 73 19 78 0 133 chain 25280 chr10 135534747 + 123777540 123777837 L1PA8A 6298 - 8 306 103320 99 0 1 198 chain 30955 chr10 135534747 + 123782958 123783319 L1PA5 6144 + 5782 6144 82592 214 0 1 147 chain 21529 chr10 135534747 + 123812608 123812967 THE1B 368 - 0 368 122049 60 0 1 4 1 0 11 6 3 70 24 21 25 2 1 77 12 14 22 0 15 40 1 0 4 chain 3977 chr10 135534747 + 123814762 123814884 LTR35B 538 - 172 295 207736 33 60 61 29 chain 4028 chr10 135534747 + 123850718 123850856 MER33 330 + 72 207 206957 29 77 74 32 chain 5059 chr10 135534747 + 123867216 123867285 L1PB1 5432 - 10 76 194543 18 1 0 12 1 0 22 1 0 14 chain 22673 chr10 135534747 + 123871010 123871287 AluSc5 308 - 15 287 117201 161 6 1 110 chain 14516 chr10 135534747 + 123886362 123886712 MLT1A0 366 + 0 310 142835 25 7 0 28 0 1 4 1 0 90 1 0 9 89 90 54 33 0 9 chain 17166 chr10 135534747 + 123950926 123951152 MER30 238 - 0 238 135120 42 3 0 58 2 0 10 7 24 104 chain 136997 chr10 135534747 + 123962175 123963720 SVA_D 2077 - 0 2073 26641 595 0 147 123 0 178 43 0 83 83 0 40 20 0 40 75 0 40 606 chain 13880 chr10 135534747 + 124016406 124016560 L1PA4 6152 + 5997 6151 144981 154 chain 15997 chr10 135534747 + 124028288 124028481 AluSq10 312 + 97 292 138358 11 1 3 181 chain 3716 chr10 135534747 + 124078044 124078086 L1ME1 1623 - 341 383 211689 42 chain 21342 chr10 135534747 + 124140842 124141219 MSTA 426 + 1 421 122713 65 49 73 56 0 10 8 9 0 14 21 19 50 0 20 105 chain 6194 chr10 135534747 + 124150239 124150316 Tigger1 2417 - 2333 2410 183629 77 chain 36981 chr10 135534747 + 124194097 124194499 L1PA3long 6157 - 8 413 73532 6 0 3 396 chain 16200 chr10 135534747 + 124198287 124198509 MER30 238 - 6 238 137754 27 9 6 74 4 18 21 1 0 86 chain 3217 chr10 135534747 + 124233030 124233066 MER33 330 - 56 92 220619 36 chain 22970 chr10 135534747 + 124297279 124297627 L1PB 1623 + 1178 1515 115748 128 3 1 143 6 4 12 1 2 16 1 0 4 3 0 13 5 1 13 chain 24060 chr10 135534747 + 124311612 124311944 AluSp 311 + 0 311 109981 50 0 10 243 31 0 8 chain 80433 chr10 135534747 + 124362794 124363816 MER11C 1089 - 37 1089 43412 260 0 8 185 12 13 255 0 17 68 0 3 176 0 1 66 chain 80433 chr10 135534747 + 124366853 124367875 MER11C 1089 - 37 1089 43411 260 0 8 185 12 13 255 0 17 68 0 3 176 0 1 66 chain 80433 chr10 135534747 + 124370912 124371934 MER11C 1089 - 37 1089 43410 260 0 8 185 12 13 255 0 17 68 0 3 176 0 1 66 chain 80433 chr10 135534747 + 124374971 124375993 MER11C 1089 - 37 1089 43409 260 0 8 185 12 13 255 0 17 68 0 3 176 0 1 66 chain 3790 chr10 135534747 + 124414340 124414417 Tigger7 736 - 269 348 210526 19 17 19 41 chain 29793 chr10 135534747 + 124458360 124458685 AluYb8 318 + 0 317 85490 118 8 0 199 chain 10971 chr10 135534747 + 124496453 124496573 L1PA4 6152 - 1 121 156314 120 chain 29381 chr10 135534747 + 124546886 124547193 AluYg6 310 - 3 310 87166 307 chain 272815 chr10 135534747 + 124566190 124569185 L1PA3long 6157 - 0 2995 15027 493 8 8 2494 chain 95836 chr10 135534747 + 124569185 124570229 L1PA3long 6157 + 2114 3158 37867 1044 chain 35529 chr10 135534747 + 124589533 124589916 L1PA2 6032 - 0 383 75506 383 chain 50550 chr10 135534747 + 124617513 124618081 L1PA5 6144 + 5578 6143 58611 550 3 0 15 chain 510486 chr10 135534747 + 124626771 124632456 L1PA4 6152 + 450 6145 6121 793 0 1 15 2 0 146 4 13 1759 1 0 763 0 1 1139 1 0 199 1 0 25 0 4 837 chain 106925 chr10 135534747 + 124664332 124666014 L1PB1 5432 + 3739 5422 34996 253 1 0 73 1 3 23 1 4 13 16 0 190 18 10 21 13 18 118 1 0 6 0 4 70 0 1 4 23 22 41 0 6 11 2 0 215 5 4 20 0 22 90 0 10 33 14 15 64 8 16 19 1 0 6 1 0 12 2 0 3 2 0 9 4 2 52 1 0 14 1 0 45 1 0 14 25 13 18 3 1 5 1 0 14 2 0 24 1 0 21 2 1 12 1 0 18 chain 31816 chr10 135534747 + 124666098 124666438 L1PA3long 6157 - 0 340 81137 340 chain 154501 chr10 135534747 + 124677360 124679088 L1PA4 6152 - 1676 3415 24048 128 0 4 18 0 4 366 0 2 850 0 1 366 chain 150696 chr10 135534747 + 124679088 124680759 L1PA4 6152 + 4480 6151 24505 1671 chain 15328 chr10 135534747 + 124687596 124687769 L1PA4 6152 - 9 182 140398 173 chain 211102 chr10 135534747 + 124701750 124704051 L1PA3long 6157 + 3855 6157 18424 785 0 1 1516 chain 7621 chr10 135534747 + 124717639 124717726 THE1B 368 - 281 368 173405 87 chain 101086 chr10 135534747 + 124725723 124727281 L1PA13 3608 + 90 1638 36490 17 6 4 27 3 0 18 14 13 10 0 1 21 30 19 59 11 12 92 1 0 36 3 2 7 1 0 17 2 0 29 1 0 7 1 0 8 43 39 4 1 0 46 0 9 44 2 0 112 1 0 63 5 4 88 1 0 215 4 5 183 0 7 87 1 0 6 4 5 88 0 1 17 8 12 114 chain 5000 chr10 135534747 + 124736718 124736776 L1MC1 2226 + 1426 1484 195136 58 chain 21637 chr10 135534747 + 124739049 124739346 AluY 311 + 7 299 121624 23 0 7 94 1 2 44 0 1 40 10 1 68 5 0 12 chain 8910 chr10 135534747 + 124762769 124762958 MER2 342 + 119 314 166084 27 0 3 51 1 5 20 9 7 30 36 37 15 chain 4364 chr10 135534747 + 124771846 124771896 MSTD 398 + 4 54 202399 50 chain 121453 chr10 135534747 + 124771946 124773576 LTR12C 1709 - 0 1707 30550 84 7 6 339 0 1 9 18 32 9 0 12 84 0 47 209 0 40 98 41 0 266 11 9 170 0 1 77 0 2 164 5 0 20 0 9 19 chain 2243 chr10 135534747 + 124772803 124772844 LTR12C 1709 - 651 692 130793 41 chain 29345 chr10 135534747 + 124775706 124776118 MER57A1 433 - 0 431 87320 52 7 18 76 2 3 12 0 6 19 5 6 239 chain 20702 chr10 135534747 + 124784115 124784491 MER51B 395 - 12 395 124962 124 45 18 54 1 0 21 0 75 23 42 1 56 0 1 10 chain 25573 chr10 135534747 + 124792096 124792394 AluSp 311 - 3 301 101859 298 chain 27928 chr10 135534747 + 124814649 124814998 THE1A 353 - 0 353 93248 212 0 4 27 1 0 27 0 1 82 chain 56069 chr10 135534747 + 124814998 124815684 THE1A-int 1579 - 0 1567 55080 349 0 881 337 chain 29104 chr10 135534747 + 124859173 124859483 AluYg6 310 + 0 310 88531 310 chain 21410 chr10 135534747 + 124867380 124867727 THE1D 372 + 0 372 122474 72 0 10 14 0 2 5 2 0 25 0 4 36 42 47 5 0 1 13 2 8 98 1 0 32 chain 7255 chr10 135534747 + 124928372 124928478 MER30 238 + 125 238 175732 27 4 8 36 0 3 39 chain 82858 chr10 135534747 + 124937427 124938435 L1PA7 6471 + 5446 6461 42393 37 0 1 25 0 2 103 0 3 276 12 15 114 14 12 427 chain 7224 chr10 135534747 + 124951036 124951394 MLT1C 463 + 63 455 175922 61 109 100 35 130 173 23 chain 7251 chr10 135534747 + 124981062 124981155 L1PB4 2604 + 2421 2514 175755 93 chain 125302 chr10 135534747 + 124984223 124985799 THE1B-int 1605 - 0 1605 29299 682 5 0 459 7 32 159 0 2 26 0 3 80 4 7 133 8 9 13 chain 3698 chr10 135534747 + 124994356 124994401 L1M2c 2366 - 455 500 211956 45 chain 3285 chr10 135534747 + 125013871 125013975 HAL1-2a_MD 234 + 0 222 219274 12 8 0 17 3 0 9 3 1 14 21 152 17 chain 4725 chr10 135534747 + 125015084 125015185 HAL1-2a_MD 234 + 0 231 198224 12 20 0 27 0 155 22 6 1 14 chain 121033 chr10 135534747 + 125042006 125043433 LTR12C 1709 - 0 1709 30684 84 1 0 229 0 2 166 0 4 106 3 1 5 1 0 98 0 278 170 0 1 267 0 1 14 5 3 67 0 2 211 chain 8294 chr10 135534747 + 125049133 125049314 MLT1E 632 - 380 614 169434 70 21 70 17 11 12 13 19 22 30 chain 33431 chr10 135534747 + 125051458 125052163 L1PA6 6164 + 5733 6162 78513 93 0 1 50 0 1 120 280 2 162 chain 13458 chr10 135534747 + 125052576 125052738 L1PA6 6164 + 6000 6162 146494 162 chain 4867 chr10 135534747 + 125056445 125056500 MLT1B 390 + 290 345 196619 55 chain 6414 chr10 135534747 + 125095002 125095115 L1PA15 4387 - 62 170 181920 12 11 9 34 8 5 48 chain 23846 chr10 135534747 + 125095780 125096134 THE1A 353 - 0 353 111209 38 26 27 86 1 0 94 1 0 43 3 4 4 1 0 57 chain 124774 chr10 135534747 + 125096142 125097662 THE1A-int 1579 - 23 1552 29457 78 0 1 199 0 4 224 9 6 173 0 1 308 0 1 121 0 2 124 0 2 39 0 1 245 chain 27636 chr10 135534747 + 125097689 125098039 THE1A 353 - 0 349 94246 151 1 0 91 5 4 22 0 1 80 chain 64846 chr10 135534747 + 125099686 125100394 L1PA3long 6157 - 0 707 50637 339 2 1 367 chain 21492 chr10 135534747 + 125100853 125101098 L1PA5 6144 - 1 245 122170 12 1 0 232 chain 123658 chr10 135534747 + 125146948 125148512 THE1B-int 1605 + 0 1603 29824 430 1 26 616 3 0 80 0 5 18 5 6 209 0 1 195 0 10 7 chain 25642 chr10 135534747 + 125154781 125155127 THE1B 368 + 0 368 101535 44 0 15 110 4 3 134 5 13 49 chain 58446 chr10 135534747 + 125227481 125228492 L1PA7 6471 - 1 720 53717 34 0 3 116 1 0 180 0 3 196 305 0 86 0 8 93 chain 13758 chr10 135534747 + 125300297 125300478 MER30 238 + 38 238 145410 61 11 30 109 chain 35157 chr10 135534747 + 125324404 125324923 MLT2A2 560 - 0 560 75979 32 0 4 111 3 14 46 13 45 91 35 21 13 1 0 121 0 8 39 0 1 14 chain 24632 chr10 135534747 + 125326426 125326722 AluSp 311 + 10 307 106813 271 0 1 25 chain 41992 chr10 135534747 + 125417506 125418052 MLT2A2 560 - 1 560 66638 146 3 14 174 0 1 44 1 0 71 0 2 107 chain 7671 chr10 135534747 + 125495150 125495239 Tigger1 2417 + 2082 2171 173097 89 chain 27643 chr10 135534747 + 125544354 125544751 MER51B 395 + 0 395 94232 24 28 15 156 0 18 32 1 0 37 6 0 113 chain 4388 chr10 135534747 + 125547410 125547508 LTR36 617 + 12 124 202099 19 22 28 11 5 13 41 chain 35222 chr10 135534747 + 125549146 125550103 LTR10A 586 - 49 586 75896 23 1 2 89 0 1 93 377 71 36 29 0 25 87 0 57 1 0 65 0 1 74 chain 25474 chr10 135534747 + 125570666 125570954 L1PA5 6144 - 0 288 102340 288 chain 33821 chr10 135534747 + 125573624 125574070 MLT2A1 477 + 0 477 77906 161 12 9 215 4 0 6 5 43 43 chain 406773 chr10 135534747 + 125574070 125579302 HERVL-int 5654 + 0 5645 9883 182 309 0 408 7 8 263 7 12 55 17 18 128 0 1 50 0 1 250 10 719 233 0 8 1108 0 1 465 7 2 990 0 3 200 5 0 121 0 1 104 5 6 308 chain 34134 chr10 135534747 + 125579311 125579757 MLT2A1 477 + 0 477 77431 169 4 1 210 27 61 36 chain 24519 chr10 135534747 + 125587850 125588194 THE1B 368 + 0 368 107445 169 6 5 27 0 1 7 1 5 13 0 10 7 1 0 63 6 17 44 chain 2927 chr10 135534747 + 125610916 125610998 MLT1C 463 + 9 89 226563 16 36 34 30 chain 2693 chr10 135534747 + 125633339 125633368 MLT1A0 366 - 50 79 230311 29 chain 24793 chr10 135534747 + 125640079 125640366 AluY 311 + 16 304 105927 116 0 1 171 chain 3322 chr10 135534747 + 125664630 125664667 tRNA-Cys-TGY 72 - 35 72 218546 37 chain 21753 chr10 135534747 + 125683158 125683511 THE1B 368 + 0 368 121195 108 17 18 6 0 3 34 1 0 30 34 44 74 0 2 49 chain 3266 chr10 135534747 + 125695718 125695756 MIRb 242 - 106 144 219653 38 chain 29988 chr10 135534747 + 125705881 125706199 AluYb8 318 - 0 318 84842 318 chain 10849 chr10 135534747 + 125746984 125747111 HSMAR2 1300 + 1062 1189 156788 127 chain 11133 chr10 135534747 + 125747829 125748158 L1MA6 2487 - 127 384 155685 21 90 44 4 1 0 13 7 5 27 43 27 35 7 0 81 chain 64846 chr10 135534747 + 125752231 125753036 L1PA8 5853 + 5054 5853 50635 510 1 0 44 2 0 74 1 0 8 1 0 8 3 4 38 8 7 11 6 5 90 chain 27528 chr10 135534747 + 125820705 125821056 THE1A 353 + 0 353 94581 111 1 0 34 0 3 205 chain 70755 chr10 135534747 + 125930119 125930917 L1PA6 6164 - 183 981 48038 798 chain 3159 chr10 135534747 + 125934935 125935058 MIR 256 + 109 229 221751 30 70 65 18 0 2 5 chain 17532 chr10 135534747 + 125943625 125943988 THE1B 368 + 0 368 134178 93 0 4 10 33 30 32 43 40 4 0 1 14 6 14 64 18 17 27 1 0 18 chain 25343 chr10 135534747 + 125973880 125974176 AluSp 311 + 11 307 102995 296 chain 3011 chr10 135534747 + 125979003 125979038 MIRb 242 - 130 165 224787 35 chain 5161 chr10 135534747 + 125994772 125994931 HAL1-2a_MD 234 + 0 105 193441 20 10 4 23 4 10 24 54 0 24 chain 18788 chr10 135534747 + 126003281 126003643 THE1C 375 + 0 364 130714 79 6 7 23 95 97 144 1 0 14 chain 44115 chr10 135534747 + 126007964 126008480 L1PA7 6471 - 6 519 64066 6 3 0 507 chain 22261 chr10 135534747 + 126023117 126023480 THE1C 375 - 12 375 119067 14 1 0 140 26 23 8 0 2 31 30 32 113 chain 5654 chr10 135534747 + 126024276 126024345 MLT1B 390 + 312 381 188528 69 chain 25759 chr10 135534747 + 126035872 126036181 L1PA5 6144 + 5839 6144 101046 151 10 6 148 chain 14345 chr10 135534747 + 126039138 126039328 L1PA8 5853 + 5667 5853 143395 15 1 0 5 2 1 52 2 1 19 1 0 93 chain 27289 chr10 135534747 + 126049312 126049701 MSTA 426 + 0 403 95304 103 1 3 4 0 4 17 2 0 73 7 5 27 2 0 66 2 16 85 chain 25008 chr10 135534747 + 126058037 126058391 THE1B 368 + 11 368 104744 158 1 0 29 10 17 13 15 12 128 chain 3913 chr10 135534747 + 126080951 126080995 LTR56 451 + 13 57 208649 44 chain 24674 chr10 135534747 + 126111583 126111877 AluSp 311 + 2 296 106590 294 chain 10535 chr10 135534747 + 126111987 126112152 LTR23 429 + 123 296 158115 16 1 0 11 15 19 52 0 5 70 chain 15972 chr10 135534747 + 126208030 126208368 L1PB1 5432 - 10 318 138445 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 13 10 1 15 7 4 13 1 0 44 1 0 17 1 0 26 42 37 12 1 0 6 1 0 24 chain 2880 chr10 135534747 + 126251186 126251218 L1MD1 2063 + 1778 1810 227362 32 chain 10221 chr10 135534747 + 126253433 126253573 L1PB1 5432 + 5161 5296 159506 6 2 0 53 2 1 16 1 0 44 1 0 15 chain 10086 chr10 135534747 + 126283517 126283641 THE1B 368 + 244 368 160153 124 chain 18076 chr10 135534747 + 126345411 126345606 L1PA5 6144 + 5937 6132 132656 195 chain 10535 chr10 135534747 + 126391304 126391426 MSTB 430 + 2 124 158113 122 chain 8387 chr10 135534747 + 126410530 126410703 L1MA5A 2387 + 2168 2306 168922 12 1 0 7 2 1 27 8 5 12 29 0 63 1 0 11 chain 5090 chr10 135534747 + 126419424 126419570 MER58A 224 - 15 173 194187 42 72 84 32 chain 26745 chr10 135534747 + 126440872 126441182 AluY 311 + 0 306 97180 118 4 0 188 chain 28997 chr10 135534747 + 126488995 126489383 LTR7 482 + 0 482 88996 86 0 50 73 13 55 41 0 1 70 0 1 105 chain 22392 chr10 135534747 + 126493687 126493926 AluYb8 318 + 67 305 118528 139 1 0 99 chain 8091 chr10 135534747 + 126498630 126498736 MER30 238 + 122 230 170536 7 4 0 22 0 6 73 chain 5139 chr10 135534747 + 126503528 126503620 HY1 111 - 0 100 193677 32 0 1 16 18 23 21 0 2 5 chain 21637 chr10 135534747 + 126532017 126532274 AluSp 311 + 29 286 121625 257 chain 21207 chr10 135534747 + 126562723 126563024 AluSg7 307 - 9 305 123190 14 4 0 4 0 1 126 16 16 5 0 1 85 3 0 44 chain 36440 chr10 135534747 + 126569814 126571159 LTR10E 629 + 0 629 74315 28 0 1 135 70 10 18 739 87 17 2 1 55 10 9 202 30 28 32 1 0 6 chain 32972 chr10 135534747 + 126570410 126570783 L1PA5 6144 + 5761 6138 79259 327 0 4 46 chain 27182 chr10 135534747 + 126615528 126615823 AluYf4 310 - 15 310 95656 295 chain 9021 chr10 135534747 + 126620570 126620764 L1MC1 2226 - 186 372 165484 22 0 1 22 2 0 15 3 0 6 18 21 40 4 3 16 1 2 6 7 0 32 chain 23832 chr10 135534747 + 126634730 126635014 AluSp 311 + 25 309 111299 284 chain 5762 chr10 135534747 + 126646598 126646665 L1MB3 1562 - 286 353 187519 67 chain 49090 chr10 135534747 + 126697244 126697826 LTR10C 591 + 7 591 59677 503 0 1 4 0 1 75 chain 531610 chr10 135534747 + 126867563 126873686 L1PA6 6164 - 3 6164 4007 7 2 0 349 0 9 881 0 1 622 9 11 133 0 29 562 0 1 43 0 1 326 2 1 859 0 1 951 9 6 799 1 0 59 0 1 509 chain 152391 chr10 135534747 + 126939271 126941067 L1PA6 6164 - 2 1803 24294 15 0 2 123 20 20 1080 0 1 33 4 5 95 0 1 426 chain 30051 chr10 135534747 + 126942604 126942991 MLT2A2 560 - 168 552 84642 80 0 1 100 21 15 178 0 2 8 chain 12359 chr10 135534747 + 126968145 126968413 L1PB1 5432 - 10 259 150801 4 1 0 14 1 0 13 1 0 11 4 1 11 4 12 10 2 0 15 1 0 4 2 0 19 16 6 6 3 0 16 1 0 43 1 0 16 2 1 47 chain 8870 chr10 135534747 + 126998113 126998224 MER2 342 - 80 191 166280 111 chain 19967 chr10 135534747 + 127005708 127005930 L1PA5 6144 + 5922 6144 127245 222 chain 7941 chr10 135534747 + 127006607 127006732 THE1D 372 + 213 323 171374 7 0 1 62 18 2 38 chain 66299 chr10 135534747 + 127026969 127027862 L1PB1 5432 - 992 1857 49950 265 13 17 288 35 1 133 0 2 159 chain 61807 chr10 135534747 + 127027862 127028891 L1PB1 5432 + 4450 5427 51962 180 5 0 68 12 11 95 0 9 269 0 3 18 48 21 14 1 0 9 27 21 52 2 1 16 1 0 44 20 16 16 29 18 15 2 0 24 7 6 15 1 0 13 1 0 18 2 0 5 chain 118349 chr10 135534747 + 127046332 127047804 THE1B-int 1605 - 11 1605 31670 261 1 0 372 1 0 504 0 25 165 0 2 32 0 96 75 0 1 27 1 4 5 3 0 25 chain 16970 chr10 135534747 + 127067596 127067927 L1PA15 4387 - 31 347 135668 28 21 14 41 20 17 39 2 1 15 10 8 8 1 0 15 0 1 39 6 5 21 1 0 64 chain 3841 chr10 135534747 + 127085198 127085250 L1MA5A 2387 - 86 138 209771 6 1 0 5 0 1 40 chain 32564 chr10 135534747 + 127126835 127127364 L1PA15 4387 + 3858 4366 79917 32 2 0 42 1 0 172 1 0 18 7 11 52 1 0 22 4 0 9 2 1 39 17 14 44 3 1 12 15 6 23 1 0 10 chain 5980 chr10 135534747 + 127165486 127165556 L1PA2 6032 - 5 75 185424 70 chain 16776 chr10 135534747 + 127176626 127176865 MER47A 366 + 54 295 136184 26 4 0 188 5 11 16 chain 27887 chr10 135534747 + 127188148 127188492 THE1B 368 - 10 368 93407 190 1 0 109 0 15 44 chain 24318 chr10 135534747 + 127194797 127195089 L1PA8A 6298 + 5992 6288 108555 220 1 5 71 chain 23094 chr10 135534747 + 127198935 127199296 THE1B 368 + 0 368 115169 172 1 0 26 54 62 108 chain 125879 chr10 135534747 + 127206303 127207745 SVA_D 2077 + 0 2061 29136 201 1 0 4 0 1 336 0 40 246 0 40 52 1 38 40 1 2 12 0 489 38 0 2 188 0 10 322 chain 15459 chr10 135534747 + 127223038 127223355 THE1B 368 - 12 343 140026 44 7 6 28 1 10 15 71 76 60 8 9 83 chain 46090 chr10 135534747 + 127229985 127230805 L1PB1 5432 + 4634 5430 61956 32 0 24 64 1 0 40 48 51 258 1 2 11 39 0 21 1 0 7 1 0 12 2 0 3 2 0 9 4 2 50 2 1 11 3 20 28 0 1 15 12 1 29 12 9 11 2 0 24 1 0 22 1 0 12 1 0 7 1 0 15 1 0 4 chain 7099 chr10 135534747 + 127231916 127232018 Tigger4a 237 + 0 110 176764 25 5 13 72 chain 27136 chr10 135534747 + 127252968 127253403 MER1A 529 - 0 529 95807 25 13 9 24 6 9 20 10 80 187 4 5 35 20 43 31 0 1 60 chain 24557 chr10 135534747 + 127257907 127258203 AluSx4 309 + 1 297 107213 296 chain 484171 chr10 135534747 + 127301853 127307182 L1PA3long 6157 - 2 5457 7583 2978 1 0 858 1 0 1415 0 128 76 chain 29662 chr10 135534747 + 127310671 127311180 HERVL-int 5654 - 0 525 86020 19 4 3 103 39 46 54 4 0 153 1 4 34 34 39 14 1 2 15 0 2 17 0 3 17 chain 3144 chr10 135534747 + 127336008 127336043 L1MC2 1988 + 1953 1988 222076 35 chain 517278 chr10 135534747 + 127336120 127342207 L1PA5 6144 + 1 6135 5455 119 1 15 21 0 12 307 3 4 596 1 4 90 9 0 89 13 9 18 1 6 156 0 1 101 0 1 266 1 0 24 0 5 237 5 10 1020 2 0 64 1 0 80 0 4 421 0 1 658 0 2 57 0 5 24 2 0 200 1 0 113 0 7 197 0 1 348 1 0 128 0 1 712 chain 18590 chr10 135534747 + 127353373 127353604 L1MA3 4352 - 700 931 131259 231 chain 191370 chr10 135534747 + 127359602 127361999 L1PA10 4194 - 496 2918 19924 50 0 2 78 1 0 22 0 2 7 2 0 134 0 2 484 0 1 241 0 4 15 1 0 33 16 15 592 0 4 42 0 1 177 1 0 209 0 3 48 1 0 54 0 13 169 0 1 4 1 0 15 chain 206553 chr10 135534747 + 127403148 127405431 L1PA3long 6157 - 0 2287 18752 5 2 0 844 0 4 290 1 0 232 0 3 909 chain 66767 chr10 135534747 + 127405431 127406161 L1PA3long 6157 + 3130 3861 49704 501 0 1 229 chain 28273 chr10 135534747 + 127467344 127467763 MLT2A2 560 - 2 560 92031 38 4 0 6 12 34 14 0 5 48 2 111 122 2 0 7 1 10 163 chain 5945 chr10 135534747 + 127531516 127531595 MADE1 96 + 1 96 185730 41 1 17 37 chain 32813 chr10 135534747 + 127536103 127536587 MER1A 529 - 0 529 79510 64 12 11 23 9 14 282 12 52 53 12 13 17 chain 3007 chr10 135534747 + 127578074 127578205 Charlie10b 242 - 77 207 224918 28 80 79 23 chain 3866 chr10 135534747 + 127579192 127579243 U2 167 - 111 167 209354 6 0 5 45 chain 14716 chr10 135534747 + 127590677 127590840 L1PA3long 6157 + 5994 6157 142219 163 chain 2768 chr10 135534747 + 127595871 127595903 MLT1F 544 - 3 35 229212 32 chain 3335 chr10 135534747 + 127596340 127596442 MLT1E1A 663 + 345 466 218328 11 1 0 7 46 66 37 chain 38824 chr10 135534747 + 127616607 127617169 MER41A 554 - 6 554 70985 150 0 1 74 12 4 5 2 0 76 2 0 129 27 22 31 0 2 54 chain 239192 chr10 135534747 + 127619314 127622613 L1PB1 5432 - 14 3367 16818 4 0 1 9 1 0 13 1 0 21 1 0 24 2 0 10 33 23 6 1 0 7 2 0 4 1 0 16 1 0 61 1 0 52 2 0 9 63 55 481 0 1 12 6 10 93 1 2 97 0 1 25 0 1 174 13 21 59 2 1 162 1 0 231 2 4 83 14 0 16 12 11 4 0 1 126 0 8 44 0 3 117 1 2 92 0 3 7 0 1 237 1 69 62 2 0 104 2 1 36 1 2 53 0 2 136 10 8 435 chain 71615 chr10 135534747 + 127628649 127629642 LTR5B 1012 - 0 1010 47648 247 0 4 26 1 0 65 2 0 5 1 3 78 0 1 95 2 1 113 10 9 25 1 0 50 17 16 132 1 14 116 0 4 6 chain 44417 chr10 135534747 + 127633060 127633567 MER9a1 513 + 0 509 63677 61 0 2 446 chain 548824 chr10 135534747 + 127633806 127639819 L1PA2 6032 + 0 6030 1598 704 7 0 850 10 0 23 0 5 1481 1 0 24 1 0 49 0 4 307 5 0 776 0 5 285 1 0 827 1 25 609 0 4 52 chain 14431 chr10 135534747 + 127647107 127647381 L1MA5A 2387 - 531 811 143108 120 3 6 19 32 36 12 12 11 13 5 3 46 0 2 12 chain 20612 chr10 135534747 + 127651835 127652074 L1PA5 6144 + 5504 5743 125254 239 chain 35079 chr10 135534747 + 127652077 127652472 L1PA5 6144 + 5749 6144 76079 395 chain 94999 chr10 135534747 + 127658199 127659439 SVA_B 1603 - 5 1597 38097 563 109 470 194 0 15 285 0 5 24 14 0 9 2 0 13 13 0 14 chain 3644 chr10 135534747 + 127660610 127660653 MIR 256 + 74 117 212891 43 chain 21337 chr10 135534747 + 127679355 127679660 THE1B 368 - 61 368 122729 67 26 28 12 1 0 6 0 2 23 1 0 169 chain 265892 chr10 135534747 + 127713601 127717747 L1PA11 4918 + 13 4578 15398 29 2 0 43 4 1 30 2 1 8 5 3 51 1 0 35 5 2 85 0 4 59 0 5 66 0 3 55 8 7 62 141 20 87 1 5 201 1 5 37 20 325 28 8 13 132 4 7 31 0 5 25 15 20 36 0 34 27 0 17 92 0 2 12 11 14 76 1 2 204 0 4 50 10 3 47 0 4 64 4 6 37 1 0 27 0 4 14 2 18 66 0 4 52 16 37 87 1 0 4 0 1 86 13 12 21 41 49 126 2 3 120 12 15 49 0 3 30 0 3 46 0 6 75 2 6 98 1 9 70 0 3 20 0 4 55 0 1 37 0 2 22 0 2 52 0 3 23 0 8 62 0 4 137 0 6 89 0 3 37 0 1 179 10 28 31 9 16 13 9 18 28 0 1 29 25 29 11 0 8 55 1 0 82 2 0 15 1 0 12 44 38 15 1 0 13 2 0 11 chain 24074 chr10 135534747 + 127727517 127727807 AluYc 301 - 1 293 109906 176 4 6 110 chain 55428 chr10 135534747 + 127745195 127745782 L1HS 6032 - 176 763 55449 587 chain 14863 chr10 135534747 + 127745784 127745944 L1HS 6032 + 5869 6029 141741 160 chain 57795 chr10 135534747 + 127765491 127766341 L1PA16 3655 + 1763 2618 54085 32 1 0 206 3 0 5 2 4 47 0 1 89 59 69 253 2 1 43 3 0 105 chain 29828 chr10 135534747 + 127800545 127800902 L1PA8A 6298 + 5912 6290 85358 62 2 0 115 0 23 178 chain 43953 chr10 135534747 + 127830723 127831237 MER9a3 513 - 0 513 64260 377 0 1 115 3 1 19 chain 43648 chr10 135534747 + 127838015 127838553 MLT2A2 560 + 10 559 64632 389 5 16 144 chain 27669 chr10 135534747 + 127844816 127845224 MER51B 395 + 0 395 94153 34 17 5 202 38 37 117 chain 73272 chr10 135534747 + 127860971 127861826 L1PA7 6471 + 5603 6461 46897 18 0 3 269 2 1 325 1 2 240 chain 23223 chr10 135534747 + 127895352 127895717 THE1B 368 + 0 368 114578 74 15 9 86 1 0 29 40 48 40 0 2 80 chain 48399 chr10 135534747 + 127934971 127935577 L1PREC2 3366 + 1738 2341 60186 376 0 3 194 6 0 30 chain 11450 chr10 135534747 + 127949578 127949741 MER2 342 + 137 292 154496 87 13 5 63 chain 44496 chr10 135534747 + 127957417 127957966 MER41A 554 - 1 554 63584 13 1 2 109 0 2 308 0 1 118 chain 6201 chr10 135534747 + 127981538 127981610 MER5A 189 - 102 174 183571 72 chain 29134 chr10 135534747 + 128026815 128027120 AluYa5 310 - 5 310 88389 305 chain 22675 chr10 135534747 + 128029289 128029571 AluSg7 307 - 12 295 117192 132 13 14 137 chain 399627 chr10 135534747 + 128031617 128036143 L1PA5 6144 - 1 4555 10108 32 0 21 51 4 0 744 0 4 16 0 4 407 1 0 1148 7 8 459 0 4 133 2 0 1161 0 1 361 chain 27002 chr10 135534747 + 128046076 128046449 THE1C 375 - 0 366 96277 25 1 0 186 4 0 11 1 2 31 9 6 105 chain 26503 chr10 135534747 + 128047455 128047807 THE1B 368 - 0 368 98031 35 0 2 38 7 6 228 0 15 44 chain 129307 chr10 135534747 + 128047812 128049388 THE1B-int 1605 - 5 1605 28241 528 3 1 258 0 1 132 1 0 89 0 1 133 0 25 432 chain 27524 chr10 135534747 + 128049388 128049744 THE1B 368 - 0 368 94587 75 2 0 125 1 0 111 1 16 41 chain 26201 chr10 135534747 + 128054013 128054387 THE1C 375 - 0 375 99195 69 0 4 43 35 31 41 0 1 186 chain 54293 chr10 135534747 + 128067633 128068268 L1PA7 6471 + 5833 6466 56167 470 2 0 5 1 0 123 0 1 34 chain 18960 chr10 135534747 + 128078607 128078946 THE1B 368 + 0 363 130203 40 0 15 117 1 0 28 7 1 33 69 85 44 chain 25575 chr10 135534747 + 128085061 128085425 THE1B 368 + 0 368 101847 169 2 0 5 1 2 22 0 3 9 0 4 10 21 19 125 chain 385347 chr10 135534747 + 128129191 128134371 L1PB1 5432 + 33 5103 10594 323 0 12 20 4 0 66 15 14 255 2 3 42 0 1 111 0 1 413 0 1 7 1 2 93 15 0 355 4 1 20 3 1 7 0 2 96 203 102 130 0 1 265 20 15 55 0 4 42 11 4 38 0 1 329 13 0 91 0 5 376 0 1 64 0 1 322 5 7 61 0 1 382 0 1 90 0 3 339 0 4 8 3 0 39 0 1 442 chain 10688 chr10 135534747 + 128131077 128131197 L1PB1 5432 - 3460 3580 157461 120 chain 7823 chr10 135534747 + 128154838 128154922 AluY 311 + 38 122 172172 84 chain 11234 chr10 135534747 + 128215831 128215965 L1MB7 1623 - 436 570 155290 134 chain 5397 chr10 135534747 + 128219826 128220026 MER20 218 + 22 218 191010 54 73 67 17 37 39 19 chain 8991 chr10 135534747 + 128224115 128224225 L1PA5 6144 + 6036 6144 165652 99 2 0 9 chain 4536 chr10 135534747 + 128226352 128226433 MLT1C 463 + 0 80 200391 17 19 18 45 chain 17644 chr10 135534747 + 128226622 128226928 THE1B 368 - 41 368 133858 87 22 26 12 0 1 7 6 8 10 0 1 6 2 0 59 5 6 21 11 25 58 chain 4669 chr10 135534747 + 128236711 128236772 L1MD1 2063 + 935 996 198878 61 chain 5320 chr10 135534747 + 128245533 128245630 MADE1 96 - 0 96 191823 39 24 23 34 chain 42846 chr10 135534747 + 128260839 128261383 MER41A 554 - 0 554 65598 358 6 16 180 chain 13800 chr10 135534747 + 128261383 128261582 MER41A 554 + 248 466 145272 66 2 0 5 0 2 24 1 0 33 7 26 26 0 1 35 chain 37574 chr10 135534747 + 128261582 128262053 LTR2 463 - 0 463 72717 24 1 0 28 1 0 29 0 1 142 6 0 181 2 1 57 chain 335418 chr10 135534747 + 128277253 128281580 L1PA11 4918 + 8 4487 12011 6 1 0 28 2 0 35 11 8 30 1 0 13 2 0 36 3 5 11 1 0 33 9 6 29 1 0 462 1 3 378 0 3 114 0 2 18 10 17 202 0 5 548 13 16 120 0 141 270 2 0 641 2 1 235 0 2 5 1 0 302 0 1 38 1 4 109 7 8 417 2 6 10 4 0 19 0 1 47 2 1 13 2 0 30 0 2 35 2 0 13 chain 26764 chr10 135534747 + 128291705 128292076 THE1C 375 - 0 375 97111 26 1 0 31 0 3 159 10 14 17 3 0 100 0 1 24 chain 3967 chr10 135534747 + 128306824 128306870 MER104 178 - 122 168 207886 46 chain 26498 chr10 135534747 + 128333553 128333843 L1PA2 6032 + 5742 6032 98046 290 chain 538298 chr10 135534747 + 128365042 128371027 L1PA3long 6157 + 0 6147 3102 152 0 1 211 0 1 54 0 17 345 2 138 1662 0 3 942 1 0 462 7 8 358 0 4 1789 chain 35948 chr10 135534747 + 128387741 128388184 L1PB1 5432 + 4659 5102 74960 145 1 0 63 0 1 234 chain 15646 chr10 135534747 + 128388184 128388502 L1PB1 5432 + 5103 5391 139447 12 4 1 22 1 0 9 1 0 9 2 0 3 2 0 10 3 1 49 4 3 15 1 0 44 1 0 7 0 1 7 3 0 15 8 0 16 12 9 10 2 0 24 1 0 21 chain 38664 chr10 135534747 + 128396645 128397175 MER41A 554 - 0 539 71206 142 1 5 86 0 2 5 6 5 59 1 0 9 0 2 111 7 8 61 1 2 34 0 1 7 chain 2822 chr10 135534747 + 128397707 128397739 LTR26B 539 + 456 488 228430 32 chain 89936 chr10 135534747 + 128413831 128414855 L1PA6 6164 - 12 1040 39673 852 0 4 172 chain 389837 chr10 135534747 + 128438510 128443795 L1PB1 5432 - 8 5312 10456 4 1 0 16 4 1 12 1 0 21 1 0 24 61 46 5 1 0 15 1 0 43 1 0 16 2 1 53 2 0 9 26 20 24 1 0 11 27 1 148 22 34 103 6 5 105 0 2 83 8 67 188 0 1 65 0 12 316 0 1 31 0 1 60 0 1 135 35 21 881 10 12 41 0 1 19 0 3 147 0 5 113 1 0 221 0 2 434 0 2 244 4 0 77 20 21 80 31 18 7 1 0 628 7 5 24 0 5 120 0 3 202 3 4 23 0 1 260 chain 527114 chr10 135534747 + 128449627 128456060 L1PA7 6471 - 1 6468 4491 747 18 4 95 0 3 302 0 1 6 0 5 16 2 0 18 1 7 152 5 27 270 0 4 143 0 4 271 2 3 4 1 0 90 0 3 147 0 1 599 3 7 203 0 1 601 0 1 40 7 1 62 15 0 73 7 2 465 11 10 314 0 11 5 1 0 487 8 8 843 1 5 308 7 8 6 0 7 77 chain 3766 chr10 135534747 + 128456240 128456280 Charlie1a 1436 + 1137 1177 210874 40 chain 26974 chr10 135534747 + 128469190 128469557 THE1C 375 + 0 375 96359 77 18 26 58 0 1 6 1 0 174 0 1 6 1 0 26 chain 100380 chr10 135534747 + 128481633 128483029 L1PB2 3958 + 2439 3838 36659 44 0 2 223 0 2 119 1 11 19 0 1 64 1 0 94 0 1 10 6 12 72 0 1 24 0 3 74 0 1 91 2 0 54 1 0 13 10 0 64 2 0 13 4 0 22 6 8 64 1 0 73 1 0 53 9 8 67 13 11 17 5 4 60 chain 6494 chr10 135534747 + 128528585 128528673 Tigger3a 397 + 78 242 181309 19 0 76 69 chain 204168 chr10 135534747 + 128550674 128553298 L1PA5 6144 + 3809 6142 18912 279 0 7 246 0 4 444 0 8 23 309 0 474 1 0 848 chain 543037 chr10 135534747 + 128570448 128576460 L1PA3long 6157 + 10 6157 2334 93 0 1 48 0 1 7 0 1 289 1 0 321 0 1 4 0 128 847 0 1 829 0 3 3573 chain 82399 chr10 135534747 + 128579201 128580256 MER11C 1089 + 0 1063 42586 251 0 1 65 0 4 21 1 0 42 2 1 206 6 4 16 5 7 69 0 4 11 1 0 35 0 1 127 0 1 197 chain 7859 chr10 135534747 + 128609375 128609469 HY3 101 + 0 94 171944 94 chain 24808 chr10 135534747 + 128770179 128770479 AluSp 311 - 11 311 105848 300 chain 3799 chr10 135534747 + 128782985 128783220 L1MA8 2339 - 11 220 210397 29 53 37 5 1 0 24 63 59 14 24 20 11 1 0 10 chain 116791 chr10 135534747 + 128792594 128793956 SVA_B 1603 - 11 1603 32192 598 1 205 222 0 1 61 1 40 406 25 0 14 0 3 19 0 8 15 chain 10120 chr10 135534747 + 128832584 128832721 THE1B 368 - 176 313 159995 16 5 4 31 0 1 85 chain 26048 chr10 135534747 + 128836219 128836517 AluSp 311 + 4 302 99831 298 chain 13124 chr10 135534747 + 128851458 128851615 AluYc 301 + 0 281 147745 35 0 124 122 chain 17790 chr10 135534747 + 128876836 128877110 L1PB1 5432 + 4942 5220 133444 110 2 1 44 4 17 20 1 0 13 1 0 9 2 0 3 2 0 9 3 1 51 chain 30094 chr10 135534747 + 128926650 128927046 L1PA8 5853 - 0 389 84504 93 1 0 19 2 1 48 1 0 10 1 0 74 2 0 44 1 0 100 chain 7785 chr10 135534747 + 128927046 128927136 L1PA8 5853 + 5382 5472 172387 90 chain 136278 chr10 135534747 + 129049647 129051151 L1PA3long 6157 - 0 1500 26787 565 7 3 932 chain 3353 chr10 135534747 + 129097293 129097330 MLT1C 463 + 70 107 218001 37 chain 97809 chr10 135534747 + 129106695 129107979 L1PA8 5853 - 0 1272 37330 93 1 0 19 2 1 41 7 6 14 10 9 63 2 0 43 1 0 49 1 0 428 7 6 72 5 3 175 2 1 249 chain 3182 chr10 135534747 + 129135786 129135833 MER53 195 - 141 194 221279 23 1 7 23 chain 13016 chr10 135534747 + 129199550 129199710 MER50 708 - 25 189 148186 135 0 4 25 chain 45083 chr10 135534747 + 129257204 129257985 LTR12 884 - 0 884 62961 39 5 138 204 10 11 18 12 15 58 24 0 23 116 0 17 0 66 188 4 45 37 1 0 25 chain 1356 chr10 135534747 + 129257609 129257645 LTR12 884 - 738 774 177143 36 chain 3972 chr10 135534747 + 129257645 129257713 LTR12 884 - 576 621 138530 32 25 2 11 chain 129629 chr10 135534747 + 129259507 129260916 L1PA4 6152 + 4727 6136 28171 1409 chain 42252 chr10 135534747 + 129275335 129275904 L1PA8 5853 - 0 566 66332 94 1 0 13 0 1 4 3 2 50 1 0 10 2 1 7 0 2 54 17 15 36 1 0 227 1 2 48 chain 27985 chr10 135534747 + 129287669 129287981 AluYa5 310 + 0 307 93054 18 0 1 107 6 0 181 chain 128481 chr10 135534747 + 129317206 129319054 L1PA15 4387 + 2515 4366 28460 179 0 1 113 1 0 11 0 11 6 0 3 223 0 1 133 0 1 153 6 17 237 11 8 201 2 0 14 4 0 64 3 1 21 19 19 40 22 23 14 4 5 90 1 0 21 19 18 42 1 0 22 4 0 10 1 0 50 6 3 44 27 24 17 1 0 11 chain 15278 chr10 135534747 + 129331361 129331593 MER30 238 + 0 238 140547 107 15 33 20 12 0 78 chain 77969 chr10 135534747 + 129340771 129342020 L1PB1 5432 - 11 1184 44534 17 1 0 13 1 0 21 1 0 23 3 1 11 63 39 15 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 82 41 210 3 4 88 0 8 163 5 0 325 1 0 30 2 1 4 0 1 21 chain 31894 chr10 135534747 + 129355582 129356012 MLT2A1 477 + 0 477 81018 170 4 1 30 0 2 74 1 8 95 7 5 11 0 43 38 chain 24393 chr10 135534747 + 129379916 129380197 AluY 311 + 5 287 108117 121 0 1 160 chain 33253 chr10 135534747 + 129387403 129387768 L1PA3long 6157 + 5791 6156 78801 365 chain 56838 chr10 135534747 + 129394698 129395415 L1PA8 5853 - 0 710 54635 93 1 0 18 4 3 51 2 1 8 4 3 68 3 1 43 1 0 421 chain 5432 chr10 135534747 + 129401495 129401607 LTR40a 516 + 396 510 190690 57 36 38 19 chain 78037 chr10 135534747 + 129427235 129428324 MER11A 1151 - 8 1151 44495 155 8 9 58 0 1 37 18 0 21 43 0 26 0 26 125 0 3 7 1 0 136 0 1 58 3 0 39 0 1 146 4 0 66 1 0 52 7 98 78 chain 111155 chr10 135534747 + 129459778 129461018 L1PA3long 6157 - 0 1248 33894 153 1 2 249 0 8 367 1 0 469 chain 75521 chr10 135534747 + 129466641 129467522 L1PA6 6164 - 2 889 45760 156 2 3 23 0 1 679 1 5 20 chain 16390 chr10 135534747 + 129467522 129467705 L1PA6 6164 + 5102 5285 136733 183 chain 436135 chr10 135534747 + 129505326 129510400 L1PA5 6144 + 1065 6135 9162 104 9 0 66 1 0 312 7 8 189 0 1 565 7 0 55 0 1 810 4 3 22 0 1 347 5 7 352 0 1 1918 1 0 83 0 8 217 chain 282904 chr10 135534747 + 129520891 129524809 L1MA1 4479 + 228 4139 14478 36 1 0 18 2 0 176 3 8 234 0 4 39 0 10 26 11 12 92 0 2 86 6 0 25 0 11 27 5 4 371 3 0 6 20 6 12 1 3 320 0 1 100 0 1 107 0 12 59 14 17 36 3 0 15 0 3 12 0 1 4 6 4 168 4 1 6 0 3 23 6 9 264 9 13 52 2 1 104 2 0 32 1 0 40 0 1 113 1 0 27 2 0 172 2 0 18 4 0 76 1 0 12 4 0 48 5 0 75 8 4 349 2 0 15 2 1 32 0 1 38 1 0 19 2 0 14 1 0 20 0 1 67 1 0 5 11 8 118 1 0 27 2 0 34 chain 217269 chr10 135534747 + 129544928 129547458 L1PA6 6164 - 12 2533 18042 172 0 1 670 4 5 422 1 0 513 0 4 218 17 0 441 0 3 72 chain 28895 chr10 135534747 + 129565305 129565608 AluYa5 310 - 7 310 89476 303 chain 142440 chr10 135534747 + 129566128 129568137 L1PB1 5432 + 3424 5422 25737 146 0 1 5 19 32 125 0 3 226 6 7 11 19 19 206 0 4 204 6 9 207 9 7 76 1 2 27 0 1 361 17 11 32 1 0 10 7 3 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 19 8 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3005 chr10 135534747 + 129573991 129574029 MER58C 217 + 162 200 224957 38 chain 7029 chr10 135534747 + 129575736 129575827 Tigger3b 1229 - 177 268 177265 91 chain 22155 chr10 135534747 + 129576168 129576529 THE1D 372 + 0 346 119573 48 18 0 26 4 5 21 3 4 62 6 10 15 11 9 25 1 0 121 chain 44087 chr10 135534747 + 129580866 129581420 L1PA13 3608 - 694 1250 64112 269 0 1 207 0 1 78 chain 40742 chr10 135534747 + 129581420 129582074 L1PA13 3608 + 2925 3548 68255 204 1 0 28 9 8 109 3 1 60 1 0 56 8 5 47 2 0 5 2 0 19 1 0 16 0 3 11 18 7 14 1 0 4 23 14 12 chain 33200 chr10 135534747 + 129598280 129598712 MLT2A1 477 + 0 477 78885 169 1 5 178 0 9 24 3 35 57 chain 28642 chr10 135534747 + 129602492 129602797 AluYk11 308 + 0 305 90554 305 chain 36145 chr10 135534747 + 129607966 129608363 L1PA5 6144 + 4294 4692 74713 391 0 1 6 chain 127892 chr10 135534747 + 129608364 129609807 L1PA5 6144 + 4692 6135 28598 1443 chain 14091 chr10 135534747 + 129622847 129623183 THE1C 375 - 0 375 144256 97 129 169 60 1 2 32 2 0 15 chain 18729 chr10 135534747 + 129630685 129631115 MER51B 395 + 0 395 130883 22 84 47 19 76 79 20 1 0 68 3 4 96 1 0 40 chain 4395 chr10 135534747 + 129632364 129632422 MER53 195 + 39 98 201997 40 0 1 18 chain 34296 chr10 135534747 + 129636408 129636823 L1PA10 4194 - 33 444 77220 11 1 0 34 3 0 366 chain 18416 chr10 135534747 + 129661730 129661966 LTR10B1 532 + 297 532 131731 7 1 0 228 chain 25220 chr10 135534747 + 129714427 129714806 THE1C 375 + 13 375 103638 34 10 7 132 25 9 33 4 6 141 chain 43530 chr10 135534747 + 129750460 129751088 LTR71B 605 + 0 605 64773 69 1 0 56 23 25 27 2 1 105 36 14 57 1 0 251 chain 19601 chr10 135534747 + 129765546 129765850 THE1B 368 + 0 306 128382 145 2 1 23 1 0 21 7 10 14 14 16 12 2 1 63 chain 7197 chr10 135534747 + 129804264 129804375 MLT1C 463 - 298 406 176082 17 0 2 22 6 0 17 3 4 46 chain 51349 chr10 135534747 + 129836489 129837069 L1PA5 6144 + 5552 6132 58066 580 chain 29987 chr10 135534747 + 129841342 129841783 MER1A 529 - 10 494 84844 47 8 10 156 7 8 138 28 68 57 chain 4728 chr10 135534747 + 129877452 129877523 MER5A 189 - 118 189 198184 27 7 7 37 chain 28861 chr10 135534747 + 129929126 129929428 AluYa5 310 - 8 310 89616 302 chain 43498 chr10 135534747 + 129933661 129934268 LTR66 600 - 0 600 64815 98 16 0 29 2 1 44 0 3 11 1 0 4 1 7 73 8 10 320 chain 28441 chr10 135534747 + 129935572 129935877 AluYf4 310 - 5 310 91415 305 chain 15565 chr10 135534747 + 129945376 129945728 THE1B 368 + 1 356 139686 107 44 45 24 66 65 27 0 2 15 0 2 18 17 16 34 chain 19028 chr10 135534747 + 129993894 129994171 L1PA16 3655 - 67 346 130039 11 3 0 52 19 24 192 chain 521004 chr10 135534747 + 130021843 130027974 L1PA6 6164 - 2 6159 5054 4 1 0 11 1 0 644 0 3 184 0 4 413 0 1 803 5 10 391 3 0 164 1 0 864 2 1 52 6 7 280 0 1 1105 1 2 403 2 19 791 chain 52639 chr10 135534747 + 130041783 130042385 L1PA5 6144 + 5541 6143 57217 602 chain 25307 chr10 135534747 + 130099893 130100226 THE1B 368 - 12 358 103187 164 2 0 17 1 0 48 0 1 71 1 16 29 chain 29144 chr10 135534747 + 130118013 130118324 AluYb8 318 - 7 318 88349 311 chain 4059 chr10 135534747 + 130153063 130153109 MADE1 96 - 50 96 206501 46 chain 70641 chr10 135534747 + 130154768 130155651 L1PA10 4194 - 33 930 48089 11 1 0 34 3 0 253 6 12 51 0 1 340 0 11 31 2 0 81 0 2 70 chain 24936 chr10 135534747 + 130168513 130168809 AluSp 311 + 15 311 105131 296 chain 3752 chr10 135534747 + 130229802 130229844 Eulor11 131 - 45 87 211115 42 chain 43430 chr10 135534747 + 130231130 130231638 L1PA4 6152 + 5633 6152 64894 231 0 1 33 1 0 101 1 0 4 0 11 15 0 1 122 chain 113505 chr10 135534747 + 130239404 130240979 L1PA10 4194 + 245 1767 33224 5 1 0 22 3 1 14 1 0 7 37 12 7 1 0 22 2 0 21 1 0 6 6 5 13 5 0 10 9 0 13 1 0 78 6 3 100 2 1 1182 chain 30191 chr10 135534747 + 130311979 130312358 THE1C 375 - 0 375 84223 24 1 0 226 3 0 125 chain 19018 chr10 135534747 + 130350654 130350983 THE1B 368 + 10 354 130071 34 10 25 50 11 2 54 1 0 5 0 1 4 1 0 13 41 51 105 chain 88870 chr10 135534747 + 130384878 130385859 L1PA3long 6157 + 5172 6157 40054 138 0 4 843 chain 25798 chr10 135534747 + 130414693 130415048 THE1C 375 + 2 363 100882 77 6 7 56 0 4 33 0 3 35 1 0 133 1 0 13 chain 21266 chr10 135534747 + 130425713 130425987 AluSx 319 + 7 292 122970 67 0 14 189 6 3 12 chain 9004 chr10 135534747 + 130441113 130441221 MER30 238 - 0 105 165571 48 3 0 57 chain 25440 chr10 135534747 + 130442262 130442597 THE1C 375 + 0 335 102496 117 6 3 83 0 3 129 chain 5459 chr10 135534747 + 130449423 130449610 L1PB4 2604 + 2381 2572 190423 5 2 0 24 0 3 17 90 94 28 1 0 20 chain 62671 chr10 135534747 + 130453257 130454108 L1PA16 3655 + 2729 3578 51601 174 1 0 7 8 7 283 0 4 87 12 10 97 14 12 168 chain 84564 chr10 135534747 + 130570651 130571753 THE1B-int 1605 + 1 1596 41696 12 1 3 414 0 25 362 0 3 6 8 1 126 0 469 110 1 2 62 chain 61066 chr10 135534747 + 130581927 130582657 L1PA7 6471 - 5 728 52302 150 4 3 471 6 0 99 chain 3576 chr10 135534747 + 130629897 130629939 MER2 342 - 131 173 214026 42 chain 40163 chr10 135534747 + 130703537 130703991 L1PA4 6152 - 14 468 69089 454 chain 19232 chr10 135534747 + 130719008 130719372 MSTA 426 - 21 426 129430 88 1 21 47 55 53 48 28 52 39 2 1 56 chain 88594 chr10 135534747 + 130805526 130806890 L1PA15 4387 - 31 1386 40150 21 28 21 41 11 8 44 6 17 19 2 1 53 1 0 31 1 0 147 1 2 19 6 5 32 13 11 12 0 2 34 7 3 21 2 0 97 6 7 110 4 3 121 20 23 152 4 0 131 3 2 104 0 1 60 chain 149693 chr10 135534747 + 130808492 130810171 L1PA4 6152 - 1 1674 24662 333 0 1 966 0 2 346 12 3 22 chain 90024 chr10 135534747 + 130813014 130814067 L1PA6 6164 + 5094 6156 39640 895 0 8 140 1 2 17 chain 29916 chr10 135534747 + 130864616 130864956 L1PA3long 6157 + 5817 6157 85053 340 chain 133851 chr10 135534747 + 130868277 130870180 LTR12C 1709 - 0 1709 27250 59 0 131 79 0 1 211 0 4 112 1 0 110 37 0 16 91 0 149 1 0 103 201 0 524 1 2 208 chain 2740 chr10 135534747 + 130868855 130868886 LTR12C 1709 - 547 578 229622 31 chain 3880 chr10 135534747 + 130869262 130869306 LTR12C 1709 - 872 916 152962 44 chain 3884 chr10 135534747 + 130869306 130869361 LTR12C 1709 - 597 652 141406 55 chain 3462 chr10 135534747 + 130869361 130869421 LTR12C 1709 - 812 872 88645 60 chain 17638 chr10 135534747 + 130870313 130870626 THE1B 368 + 0 327 133886 45 19 25 98 6 5 25 0 3 7 25 32 63 2 0 7 1 2 15 chain 16075 chr10 135534747 + 131015098 131015293 L1PA7 6471 + 6270 6463 138133 131 3 1 61 chain 10656 chr10 135534747 + 131096194 131096341 Tigger2a 444 - 109 272 157584 38 6 22 103 chain 13128 chr10 135534747 + 131115333 131115524 MER30 238 + 30 237 147732 77 4 23 68 7 4 35 chain 17332 chr10 135534747 + 131116383 131116586 AluY 311 + 83 287 134703 49 0 1 154 chain 3960 chr10 135534747 + 131174579 131174629 MER46C 351 - 30 81 207989 24 0 1 26 chain 15157 chr10 135534747 + 131204989 131205325 L1PB1 5432 + 5119 5427 140887 17 1 0 11 1 0 9 2 0 3 2 0 10 2 0 9 10 7 35 2 1 16 1 0 43 1 0 16 3 0 6 16 6 11 1 8 4 1 0 11 13 11 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 2933 chr10 135534747 + 131228832 131228865 MIR 256 + 104 137 226444 33 chain 4896 chr10 135534747 + 131244887 131245007 MER53 195 - 37 187 196306 22 49 79 49 chain 328475 chr10 135534747 + 131373324 131376951 L1PA4 6152 + 2513 6146 12258 1842 0 1 942 0 4 706 0 1 137 chain 11694 chr10 135534747 + 131409456 131409688 MSTA 426 - 37 282 153502 19 1 0 4 0 1 14 32 51 53 22 20 21 4 0 62 chain 85987 chr10 135534747 + 131485967 131486960 L1PA5 6144 - 4 1003 41159 412 0 7 427 1 0 153 chain 6971 chr10 135534747 + 131486960 131487039 L1PA5 6144 + 5076 5155 176424 79 chain 32968 chr10 135534747 + 131530423 131530803 L1PA6 6164 - 2 382 79265 380 chain 546477 chr10 135534747 + 131530824 131536843 L1PA3long 6157 - 1 6157 1888 835 1 0 1807 0 1 1461 0 2 333 0 1 287 0 5 520 0 128 623 0 1 152 chain 23331 chr10 135534747 + 131536961 131537255 L1P3 4156 + 3848 4139 114018 259 2 0 7 2 1 24 chain 3895 chr10 135534747 + 131723377 131723421 MADE1 96 - 3 47 208927 44 chain 4296 chr10 135534747 + 131732267 131732319 MER53 195 + 5 57 203274 52 chain 23202 chr10 135534747 + 131747291 131747571 AluSp 311 + 11 287 114674 109 3 0 136 1 0 31 chain 4377 chr10 135534747 + 131776011 131776135 MLT1E2 623 + 112 235 202235 44 59 58 21 chain 306971 chr10 135534747 + 131783667 131788228 L1PB1 5432 + 702 5422 13132 60 9 12 163 0 7 79 4 5 199 0 7 156 315 14 5 0 2 85 0 3 475 7 0 49 6 476 136 14 8 5 1 0 29 0 1 402 27 18 6 0 4 81 2 0 13 0 3 304 0 14 203 4 6 223 3 25 194 9 13 18 0 1 254 1 2 42 4 7 115 1 0 174 32 28 118 0 1 147 47 20 22 1 0 6 3 2 12 33 26 37 1 0 18 1 0 43 1 0 16 24 12 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 3308 chr10 135534747 + 131874396 131874436 THE1D 372 + 332 372 218815 40 chain 530466 chr10 135534747 + 131888380 131895125 L1PA7 6471 + 0 6470 4131 213 0 1 189 0 1 211 15 11 290 6 5 321 0 6 314 0 1 187 0 1 124 0 1 337 1 0 272 1 0 154 3 6 50 2 0 400 0 4 241 0 1 141 5 4 17 1 0 118 310 0 864 0 1 246 66 0 332 0 1 185 1 0 371 1 0 79 0 2 43 0 1 343 6 104 105 26 18 154 chain 77047 chr10 135534747 + 131915587 131916664 MER11A 1151 - 0 1151 44945 66 1 0 9 0 6 16 0 2 6 0 1 152 1 33 16 0 28 69 0 4 37 4 5 10 6 9 138 12 24 136 1 0 68 35 0 11 0 11 60 0 4 143 0 8 18 1 0 61 chain 29047 chr10 135534747 + 131917081 131917393 AluYb8 318 - 7 318 88775 75 1 0 236 chain 33994 chr10 135534747 + 131918844 131919274 MER4A1 472 + 11 472 77626 25 0 5 184 0 22 63 1 6 107 1 0 49 chain 14834 chr10 135534747 + 131923030 131923311 THE1B 368 + 5 307 141831 72 30 44 16 5 6 26 1 0 11 0 1 14 1 5 14 8 12 4 1 0 12 1 0 65 chain 50261 chr10 135534747 + 131942569 131943194 L1PA8 5853 - 1 619 58818 92 1 0 19 2 1 52 1 0 9 1 0 71 3 1 43 1 0 164 0 1 4 2 1 160 chain 33416 chr10 135534747 + 131949633 131950042 L1PA6 6164 - 2 403 78537 6 7 0 330 1 0 65 chain 176711 chr10 135534747 + 131950042 131952730 L1P2 5180 - 2811 5178 21278 49 0 1 111 1 3 18 8 0 53 307 0 81 8 7 194 0 5 407 1 0 161 5 10 19 0 1 346 4 8 93 0 15 175 1 0 46 0 9 42 1 0 68 41 0 163 43 42 42 8 7 24 20 19 148 chain 29668 chr10 135534747 + 132056810 132057197 MER83 447 - 52 447 85958 154 13 21 155 1 0 4 0 1 60 chain 8648 chr10 135534747 + 132074774 132075123 MER65C 458 + 0 352 167489 77 219 223 14 1 0 38 chain 3018 chr10 135534747 + 132079866 132079906 MER20 218 - 145 185 224661 40 chain 44525 chr10 135534747 + 132089072 132089586 MER9a3 513 + 0 513 63551 19 1 0 494 chain 395949 chr10 135534747 + 132090890 132095549 HERVK9-int 4720 + 36 4720 10244 13 8 5 4 1 0 53 0 1 4 1 0 8 1 0 8 1 0 30 1 0 11 5 6 370 0 3 666 0 1 366 0 2 253 13 4 955 0 1 137 0 15 74 0 4 22 0 4 45 0 1 196 11 5 973 0 11 325 0 4 104 chain 41198 chr10 135534747 + 132095549 132096053 MER9a3 513 + 0 513 67648 13 7 0 19 0 12 154 10 14 301 chain 13150 chr10 135534747 + 132112132 132112301 L1PA16 3655 - 279 446 147648 85 2 0 82 chain 490690 chr10 135534747 + 132112346 132118021 L1PA3long 6157 - 27 5388 7333 1796 315 0 921 0 1 2643 chain 28788 chr10 135534747 + 132114149 132114457 AluYb9 318 + 0 308 89949 308 chain 88325 chr10 135534747 + 132119508 132120515 LTR13 1007 + 0 1007 40253 305 1 0 76 4 5 621 chain 25306 chr10 135534747 + 132123702 132124066 THE1C 375 - 11 375 103192 170 8 9 7 1 0 24 20 0 10 0 20 124 chain 61074 chr10 135534747 + 132154486 132155241 LTR17 781 + 2 779 52300 6 0 1 318 1 0 93 3 4 108 2 1 162 5 27 57 chain 64813 chr10 135534747 + 132163980 132164784 L1PA8 5853 - 12 803 50652 81 1 0 19 2 1 31 0 1 20 8 0 6 1 0 72 2 0 48 1 0 30 0 2 44 2 0 436 chain 51046 chr10 135534747 + 132194944 132195533 LTR10C 591 - 0 591 58282 79 0 2 510 chain 24942 chr10 135534747 + 132195612 132196300 THE1A 353 + 0 353 105097 111 1 0 49 0 1 37 1 0 27 353 19 109 chain 11264 chr10 135534747 + 132234614 132234847 L1MC1 2226 - 250 480 155175 62 12 11 14 6 0 20 26 27 16 0 1 45 11 13 21 chain 15946 chr10 135534747 + 132261890 132262456 LTR18B 584 - 14 491 138534 12 1 0 4 0 1 25 57 47 36 96 57 72 37 15 6 0 2 5 2 0 27 2 0 19 71 65 48 33 23 13 chain 7595 chr10 135534747 + 132276177 132276265 L1PA4 6152 - 0 93 173577 6 0 5 82 chain 23852 chr10 135534747 + 132285789 132286085 PABL_A 660 - 366 660 111179 148 9 6 12 0 1 127 chain 41574 chr10 135534747 + 132321665 132322211 MLT2A2 560 + 0 560 67195 360 0 1 35 25 38 126 chain 20140 chr10 135534747 + 132334138 132334494 THE1D 372 - 0 372 126712 147 57 59 90 26 40 36 chain 129999 chr10 135534747 + 132334989 132336568 L1PA7 6471 + 4890 6469 28088 1241 0 1 326 1 0 11 chain 32276 chr10 135534747 + 132351819 132352306 MER1A 529 - 0 480 80400 69 14 17 76 2 0 119 0 3 102 15 8 36 26 22 28 chain 80389 chr10 135534747 + 132426220 132427183 LTR5_Hs 974 + 0 974 43433 17 0 4 267 0 1 178 0 1 351 8 15 31 8 6 103 chain 43490 chr10 135534747 + 132443441 132443916 L1PA4 6152 + 5665 6139 64826 227 1 0 247 chain 163358 chr10 135534747 + 132449024 132450815 L1PA3long 6157 + 4352 6142 22899 1656 4 3 131 chain 25929 chr10 135534747 + 132469091 132469444 THE1A 353 - 0 351 100305 155 1 0 67 23 22 107 chain 126259 chr10 135534747 + 132469457 132471022 THE1A-int 1579 - 11 1579 29015 208 1 0 103 0 1 57 0 1 583 1 2 32 0 1 75 0 2 5 3 2 7 1 0 489 chain 26133 chr10 135534747 + 132471032 132471377 THE1A 353 - 10 353 99468 140 2 1 92 1 0 110 chain 60731 chr10 135534747 + 132481800 132482479 L1PA4 6152 - 10 689 52455 679 chain 10317 chr10 135534747 + 132537183 132537312 MSTA 426 + 282 416 159054 14 0 5 115 chain 24591 chr10 135534747 + 132596810 132597109 AluY 311 + 11 311 107035 119 1 2 179 chain 8542 chr10 135534747 + 132629973 132630067 L1PA4 6152 + 6052 6146 168054 94 chain 38564 chr10 135534747 + 132646735 132647202 L1PA7 6471 - 10 476 71348 139 2 1 190 1 0 131 0 1 4 chain 3356 chr10 135534747 + 132649275 132649316 L1PB4 2604 - 476 517 217942 41 chain 5146 chr10 135534747 + 132718711 132718774 L1MC2 1988 - 898 961 193584 63 chain 41860 chr10 135534747 + 132737178 132737709 MLT2A2 560 - 15 556 66819 128 0 11 226 1 0 176 chain 14885 chr10 135534747 + 132754385 132754576 L1PA5 6144 + 5954 6144 141670 78 3 2 110 chain 40191 chr10 135534747 + 132770513 132771283 MER9a2 513 + 0 513 69044 165 281 23 145 0 2 86 0 1 34 2 0 57 chain 6681 chr10 135534747 + 132832725 132832808 L1PA16 3655 - 87 170 179825 83 chain 19590 chr10 135534747 + 132848316 132848566 LTR7B 505 + 0 505 128409 95 0 31 37 6 230 112 chain 29419 chr10 135534747 + 132858511 132858821 AluYa5 310 - 0 310 86993 310 chain 35796 chr10 135534747 + 132954759 132955213 LTR2 463 + 0 463 75139 255 1 0 105 16 17 52 1 10 24 chain 4724 chr10 135534747 + 133064641 133064721 Tigger1 2417 - 995 1096 198237 40 16 37 24 chain 4482 chr10 135534747 + 133064946 133065120 MER52D 1964 - 701 804 200995 34 33 28 14 70 4 23 chain 17477 chr10 135534747 + 133078684 133078921 MER4A1 472 - 232 471 134311 14 4 6 219 chain 34410 chr10 135534747 + 133091597 133092054 LTR19A 502 + 0 502 77045 34 1 0 50 0 14 86 0 37 80 1 0 127 4 0 74 chain 13894 chr10 135534747 + 133100639 133100872 MER4E1 777 + 82 316 144943 29 2 0 6 0 2 53 2 1 10 1 2 33 27 28 70 chain 80237 chr10 135534747 + 133100892 133101831 L1PA7 6471 - 1 941 43490 537 0 1 229 0 1 81 1 0 91 chain 5063 chr10 135534747 + 133134144 133134202 MLT1A 405 + 25 83 194510 58 chain 4164 chr10 135534747 + 133137326 133137379 L1ME1 1623 - 341 394 205039 53 chain 7098 chr10 135534747 + 133139547 133139636 MLT1B 390 + 283 372 176767 89 chain 48431 chr10 135534747 + 133197486 133198074 LTR10C 591 - 0 591 60160 81 0 2 177 0 1 330 chain 33265 chr10 135534747 + 133272804 133273318 MLT2A2 560 - 0 560 78782 26 42 42 75 0 11 66 0 32 81 27 30 197 chain 537538 chr10 135534747 + 133302842 133308981 L1PA4 6152 - 1 6152 3230 93 0 15 43 1 2 242 0 3 5 3 0 840 0 4 183 8 1 341 0 1 439 0 1 280 1 0 218 0 3 266 0 1 507 0 1 338 1 0 1029 0 1 345 0 1 372 1 0 116 6 0 140 6 5 315 chain 26245 chr10 135534747 + 133339822 133340234 THE1D-int 1627 - 5 434 99036 4 0 1 20 0 3 17 1 0 64 1 0 158 40 54 64 19 20 24 chain 12093 chr10 135534747 + 133340679 133340841 MSTA 426 + 244 426 151822 52 1 21 109 chain 61794 chr10 135534747 + 133379531 133380366 L1P2 5180 - 4332 5178 51996 46 0 15 272 1 0 8 1 0 97 0 1 149 17 16 50 46 44 148 chain 25751 chr10 135534747 + 133433133 133433563 L1PA14 3548 + 3035 3456 101085 53 0 1 19 10 6 17 2 0 6 1 0 84 4 3 79 1 0 24 9 8 6 4 0 22 0 1 4 5 11 8 1 0 11 4 3 13 1 0 42 chain 29969 chr10 135534747 + 133449094 133449412 AluYb8 318 + 0 318 84915 318 chain 132945 chr10 135534747 + 133493314 133494817 L1PA5 6144 + 4624 6128 27433 1364 1 0 6 2 4 130 chain 7468 chr10 135534747 + 133496172 133496286 MER30 238 - 0 113 174356 34 9 6 58 0 2 13 chain 151602 chr10 135534747 + 133536884 133538506 L1HS 6032 + 4409 6031 24386 1622 chain 23174 chr10 135534747 + 133549858 133550387 L1PA15 4387 + 3845 4351 114794 20 0 4 19 2 0 25 6 1 18 1 0 103 2 1 55 61 59 24 12 11 23 14 9 40 16 13 7 1 0 4 0 1 20 34 27 22 chain 24802 chr10 135534747 + 133588340 133588654 PABL_A 660 + 332 640 105886 292 6 0 16 chain 3089 chr10 135534747 + 133636023 133636057 PABL_A 660 - 238 272 223122 34 chain 76078 chr10 135534747 + 133671947 133672969 LTR13 1007 - 0 1007 45427 33 21 19 139 0 1 113 5 8 197 17 3 44 3 1 63 4 5 308 2 0 73 chain 2704 chr10 135534747 + 133791004 133791143 MLT1A0 366 - 79 244 230198 27 96 122 16 chain 86173 chr10 135534747 + 133800749 133801801 L1PA5 6144 + 5123 6132 41088 107 59 4 58 0 7 512 2 0 176 4 11 134 chain 11737 chr10 135534747 + 133802191 133802375 LTR8 732 - 0 179 153312 26 4 3 115 17 13 22 chain 55094 chr10 135534747 + 133813190 133816570 MER4E1 777 + 0 777 55649 24 0 1 244 6 1 55 6 9 25 312 0 46 0 1 132 3 0 7 41 20 71 151 0 30 2117 0 25 0 1 85 chain 44905 chr10 135534747 + 133815847 133816444 MER4E1 777 + 0 649 63168 17 0 1 42 0 14 182 0 11 49 8 12 214 1 10 40 0 13 44 chain 56490 chr10 135534747 + 133819558 133820394 MER4E1 777 - 9 777 54858 97 9 9 29 36 11 67 62 18 241 1 0 5 0 1 265 3 4 21 chain 5806 chr10 135534747 + 133825032 133825138 MER41-int 2638 + 112 213 187087 53 23 18 30 chain 48169 chr10 135534747 + 133828772 133829638 LTR10C 591 - 7 591 60344 73 2 1 163 280 0 265 1 0 82 chain 32026 chr10 135534747 + 133830030 133830474 MER4E1 777 - 7 447 80826 45 0 1 5 5 4 82 20 13 58 0 1 10 1 3 218 chain 4250 chr10 135534747 + 133854444 133854495 L1MB1 2102 - 103 154 203869 51 chain 24602 chr10 135534747 + 133867266 133867564 AluY 311 + 10 303 106984 123 2 0 45 4 1 124 chain 23957 chr10 135534747 + 133886715 133886988 AluYk4 311 - 38 311 110581 273 chain 63174 chr10 135534747 + 133887858 133888765 L1PB4 2604 - 520 1454 51370 109 46 47 23 0 8 149 0 4 94 0 1 116 1 0 155 0 1 97 17 28 63 3 5 34 chain 369258 chr10 135534747 + 133895757 133901214 L1PB1 5432 - 12 4821 11086 16 1 0 12 9 8 14 1 0 23 3 1 14 1 0 5 2 0 19 16 6 6 1 0 16 1 0 43 1 0 16 2 1 42 7 0 7 0 5 7 6 2 11 1 0 12 1 0 19 5 0 8 311 4 173 0 6 111 3 1 103 0 1 75 4 5 78 1 0 322 0 1 21 0 2 53 9 4 138 1 0 161 11 9 107 5 7 268 37 1 432 0 2 133 0 3 62 1 0 4 0 1 66 1 2 200 306 2 8 0 1 41 3 1 118 0 4 91 10 18 254 0 2 306 0 1 301 1 3 37 0 1 116 0 4 397 7 10 82 0 2 140 chain 536398 chr10 135534747 + 133901214 133907378 L1PA5 6144 - 1 6139 3395 783 0 1 1708 1 0 391 0 3 97 0 3 87 74 0 533 0 7 216 0 1 470 1 6 602 1 0 271 1 0 355 0 4 76 4 0 12 1 33 52 1 0 220 0 1 146 3 1 52 0 1 6 chain 27768 chr10 135534747 + 134028830 134029190 THE1B 368 + 0 368 93809 172 5 4 24 0 9 159 chain 119966 chr10 135534747 + 134029190 134031054 THE1B-int 1605 + 0 1594 31069 64 3 1 213 1 0 58 0 2 85 17 44 48 322 0 25 0 19 481 2 0 380 1 5 88 5 10 71 chain 4445 chr10 135534747 + 134051779 134052237 MER74A 558 - 0 508 201403 25 14 23 24 362 403 33 chain 21328 chr10 135534747 + 134099350 134099642 AluY 311 + 7 295 122764 73 3 0 43 22 21 151 chain 24965 chr10 135534747 + 134128654 134128988 L1PA8 5853 + 5527 5853 104980 37 1 0 46 2 0 68 3 2 14 2 1 45 2 1 19 1 0 87 1 0 6 chain 12684 chr10 135534747 + 134138604 134138774 THE1B 368 + 0 184 149513 33 7 22 114 1 0 15 chain 26035 chr10 135534747 + 134140573 134140923 THE1B 368 + 0 368 99882 44 0 15 109 1 0 32 4 0 102 3 1 6 0 10 49 chain 43957 chr10 135534747 + 134148602 134149576 LTR71B 605 - 2 605 64257 46 12 20 4 1 0 91 390 0 293 1 14 5 2 0 52 0 1 77 chain 5460 chr10 135534747 + 134148757 134148842 LTR71B 605 - 165 249 190415 34 7 6 44 chain 21785 chr10 135534747 + 134159901 134160175 AluY 311 + 3 289 121080 129 0 1 86 11 22 48 chain 25361 chr10 135534747 + 134191403 134191696 AluY 311 + 0 300 102880 151 0 7 142 chain 5206 chr10 135534747 + 134309197 134309290 LTR10E 629 - 0 91 192970 6 1 0 37 14 13 35 chain 24936 chr10 135534747 + 134313759 134314116 THE1C 375 + 2 375 105134 118 3 0 92 7 10 62 0 17 48 9 8 18 chain 27388 chr10 135534747 + 134412215 134412568 THE1A 353 - 0 353 95006 243 3 2 72 0 1 35 chain 124207 chr10 135534747 + 134412568 134414140 THE1A-int 1579 - 0 1579 29624 117 0 2 646 0 1 475 0 2 134 33 33 152 0 2 15 chain 28151 chr10 135534747 + 134414167 134414494 THE1A 353 - 27 353 92457 216 1 0 110 chain 12346 chr10 135534747 + 134485634 134485779 HERVL-int 5654 + 5362 5508 150845 72 0 1 73 chain 3475 chr10 135534747 + 134485789 134485829 THE1B-int 1605 + 1553 1593 215743 40 chain 27283 chr10 135534747 + 134485840 134486196 THE1B 368 + 0 368 95328 44 0 15 110 1 0 124 2 0 75 chain 188363 chr10 135534747 + 134486330 134488564 HERVL-int 5654 - 351 2593 20204 58 1 2 244 0 4 240 0 1 848 0 1 839 0 1 4 chain 95800 chr10 135534747 + 134493982 134495093 LTR12C 1709 + 0 1709 37875 293 5 14 249 1 0 94 0 485 89 0 4 168 0 102 127 1 0 84 chain 106019 chr10 135534747 + 134613690 134615005 LTR12C 1709 - 1 1709 35252 58 0 131 28 37 14 6 7 0 31 0 1 211 0 4 106 12 9 61 0 1 41 0 2 19 0 278 400 5 14 293 chain 15206 chr10 135534747 + 134673360 134673535 AluSc5 308 + 82 257 140763 175 chain 31514 chr10 135534747 + 134769948 134770302 L1PA5 6144 + 5777 6138 81626 211 0 7 143 chain 8936 chr10 135534747 + 134815468 134816124 LTR47A 437 - 16 365 165944 20 7 8 62 360 52 14 127 105 29 4 26 33 chain 40888 chr10 135534747 + 134817678 134818117 LTR7Y 441 + 0 441 68041 343 0 2 96 chain 55025 chr10 135534747 + 134848589 134849330 MER4E 760 + 8 760 55693 143 22 25 86 0 1 13 0 5 251 2 4 78 4 3 16 0 1 126 chain 26890 chr10 135534747 + 134957252 134957635 LTR13 1007 + 0 377 96668 60 10 8 180 12 13 5 3 0 5 2 0 106 chain 221027 chr10 135534747 + 134960082 134963291 L1PA14 3548 + 90 3453 17816 52 1 0 6 3 0 69 1 0 20 33 31 28 0 4 203 7 4 37 7 6 50 0 2 39 1 3 41 1 4 35 0 2 208 6 4 17 1 2 49 0 4 171 0 7 211 14 20 5 0 1 64 0 1 13 0 1 6 1 5 91 0 1 374 0 108 132 0 48 7 0 7 10 1 0 240 0 1 155 1 0 171 0 2 58 2 0 18 3 1 14 2 0 27 9 1 19 9 5 100 13 9 17 2 0 6 1 0 31 6 7 41 38 36 79 1 0 11 5 1 36 4 2 10 9 7 17 1 0 38 chain 20616 chr10 135534747 + 135031320 135031582 AluSg 306 + 22 299 125238 112 4 19 146 chain 21501 chr10 135534747 + 135070206 135070504 AluSx1 309 + 5 303 122142 119 0 1 126 27 26 26 chain 10612 chr10 135534747 + 135114640 135114907 AluSp 311 - 19 156 157763 11 0 1 111 131 0 14 chain 74113 chr10 135534747 + 135118092 135119102 LTR13 1007 + 0 1007 46452 60 10 8 312 5 6 60 1 2 180 2 1 20 0 1 9 20 4 22 1 2 7 0 13 196 0 1 64 10 8 31 chain 69140 chr10 135534747 + 135127203 135128190 LTR13 1007 + 4 1007 48742 60 20 19 39 0 2 255 11 12 237 2 1 54 0 15 18 8 0 8 6 6 82 9 10 11 0 4 71 0 5 35 37 35 24 chain 11478 chr10 135534747 + 135134411 135134880 LTR12 884 - 277 711 154384 50 195 180 33 25 8 23 2 18 24 17 0 24 10 26 16 17 0 24 1 0 8 chain 80054 chr10 135534747 + 135135308 135136265 LTR13A 966 + 2 966 43562 83 1 0 43 0 1 283 0 2 85 7 12 455 chain 17411 chr10 135534747 + 135158501 135158723 LTR8 732 - 457 680 134473 84 2 3 136 chain 81069 chr10 135534747 + 135180700 135181658 LTR13A 966 + 0 966 43154 128 0 1 283 0 2 85 7 12 455 chain 70133 chr10 135534747 + 135210053 135210970 LTR13 1007 + 0 928 48335 69 10 8 89 3 0 9 4 7 66 15 23 110 4 5 242 2 1 57 0 4 10 0 1 227 chain 110847 chr10 135534747 + 135227420 135228699 SVA_D 2077 - 0 2069 33987 536 0 661 79 0 114 107 15 18 27 2 0 499 0 14 14 chain 69107 chr10 135534747 + 135229909 135230658 L1PA3long 6157 - 0 749 48760 749 chain 51586 chr10 135534747 + 135230658 135231243 L1P1 4361 + 3758 4341 57897 176 0 1 215 1 0 155 1 0 23 2 1 12 chain 34322 chr10 135534747 + 135282852 135283255 L1PA7 6471 + 6065 6466 77176 394 2 0 7 chain 25121 chr10 135534747 + 135307311 135307674 THE1A 353 - 0 353 104170 46 16 8 41 1 0 16 1 2 5 1 0 125 2 1 109 chain 28131 chr10 135534747 + 135309250 135309660 MLT2A1 477 - 0 431 92537 48 31 42 40 1 0 173 1 5 28 1 2 42 0 6 45 chain 440785 chr10 135534747 + 135309672 135316013 HERVL-int 5654 - 324 5654 9034 694 1016 13 536 0 1 180 0 2 268 8 28 148 31 0 682 0 2 1585 4 0 6 5 9 148 0 1 191 1 0 210 1 0 188 7 8 194 0 1 16 9 6 213 chain 80158 chr10 135534747 + 135310384 135311382 LTR13 1007 - 0 1007 43525 28 5 4 5 2 0 7 0 2 145 0 1 126 1 5 298 4 5 238 0 4 139 chain 31816 chr10 135534747 + 135316013 135316443 MLT2A1 477 - 0 475 81136 24 0 17 8 5 0 14 6 32 11 0 1 197 0 4 26 0 1 24 0 1 115 chain 5522 chr10 135534747 + 135316448 135316602 MSTB1 431 - 234 397 189819 15 43 50 53 21 23 22 chain 176137 chr10 135534747 + 135316977 135318867 L1PA2 6032 - 1 1891 21342 1890 chain 80910 chr10 135534747 + 135318867 135319744 L1PA2 6032 + 3252 4129 43144 877 chain 45103 chr10 135534747 + 135331862 135332427 LTR22 571 - 0 565 62929 266 6 11 38 9 5 173 1 0 72 chain 12455 chr10 135534747 + 135353114 135353274 MLT2A2 560 - 0 172 150443 70 0 1 72 0 11 18 chain 82592 chr10 135534747 + 135354558 135355521 LTR5_Hs 974 - 5 974 42504 57 2 1 457 2 0 5 0 2 200 0 7 240 chain 227965 chr10 135534747 + 135360153 135363302 L1PA10 4194 + 199 4150 17419 7 2 0 10 8 4 12 3 1 8 1 0 4 9 8 18 1 0 15 1 0 8 4 0 4 20 0 7 2 1 7 1 0 22 2 0 18 1 0 10 1 0 8 1 0 9 1 0 15 7 0 8 1 0 75 1 0 6 1 0 4 6 5 174 2 563 325 0 3 259 1 2 235 0 1 191 7 11 205 1 0 73 4 302 104 22 15 452 0 1 4 1 0 181 31 0 8 0 31 119 1 0 164 0 2 27 2 1 170 3 0 34 chain 7638 chr10 135534747 + 135376380 135376471 MSTA 426 - 332 426 173297 58 0 3 33 chain 545384 chr10 135534747 + 135394064 135400211 L1PA4 6152 + 6 6151 2026 351 0 1 76 1 0 4 7 6 16 6 0 120 1 0 581 0 3 72 0 1 1871 0 1 550 1 0 1245 0 4 169 7 1 220 0 4 849 chain 6543 chr10 135534747 + 135401874 135401951 MER66C 541 - 0 77 180904 77 chain 3047 chr10 135534747 + 135412591 135412623 MLT2B4 540 + 506 538 224086 32 chain 47137 chr10 135534747 + 135417043 135417655 LTR14B 630 + 9 622 61098 212 1 0 7 5 6 157 0 9 24 14 6 192 chain 47669 chr10 135534747 + 135422858 135423467 LTR14B 630 + 10 624 60719 381 0 9 36 8 0 115 6 10 63 chain 88134 chr10 135534747 + 135423467 135424684 LTR5A 1029 + 0 1029 40324 128 14 0 19 1 0 804 175 2 76 chain 15075 chr10 135534747 + 135424444 135424608 LTR5A 1029 + 787 951 141099 164 chain 28261 chr10 135534747 + 135464408 135464747 LTR17 781 + 445 781 92076 325 1 0 4 2 0 7 chain 109614 chr10 135534747 + 135465067 135466857 L1PA8 5853 - 0 1471 34296 92 7 6 14 2 1 52 41 40 39 2 0 18 1 0 27 1 0 502 327 0 49 0 4 87 0 2 17 0 1 43 0 5 170 0 4 77 5 6 187 8 6 22 chain 4921 chr10 135534747 + 135513818 135513989 MER31-int 1156 - 867 941 196047 63 97 0 11 chain 3268 chr10 135534747 + 135517033 135517074 MLT2B3 573 + 2 43 219630 41 chain 3843 chr10 135534747 + 135519709 135519752 MER72 723 - 0 43 209744 43 chain 22765 chr11 135006516 + 61405 61671 L1PA5 6144 - 2 272 116754 53 0 4 213 chain 23052 chr11 135006516 + 70227 70536 L1PA8A 6298 + 5870 6175 115385 129 9 9 126 4 0 41 chain 8592 chr11 135006516 + 71666 71764 L1PA5 6144 + 6046 6144 167769 98 chain 65665 chr11 135006516 + 73674 74396 L1PA4 6152 - 178 900 50262 722 chain 14586 chr11 135006516 + 74396 74562 L1PA4 6152 + 5975 6141 142642 166 chain 512394 chr11 135006516 + 76846 83269 L1PA7 6471 + 0 6468 5935 196 3 2 63 2 3 148 11 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 248 0 5 131 0 35 125 0 2 55 2 0 191 1 2 457 1 0 256 0 1 12 1 0 17 7 11 423 1 0 251 0 1 138 2 0 9 chain 23882 chr11 135006516 + 98286 98829 L2c 621 - 0 521 111007 15 4 0 12 11 13 53 18 12 113 1 0 60 9 0 9 70 77 68 15 16 35 26 14 24 chain 14597 chr11 135006516 + 101617 101977 THE1B 368 - 0 366 142606 47 24 23 58 84 89 34 36 38 77 chain 85168 chr11 135006516 + 149105 150168 MER11B 1079 + 0 1079 41461 220 0 5 91 1 18 49 0 1 388 8 2 290 5 4 11 chain 24699 chr11 135006516 + 262992 263284 AluSp 311 + 4 296 106443 292 chain 3341 chr11 135006516 + 286571 286611 MADE1 96 - 54 96 218210 7 0 2 33 chain 26077 chr11 135006516 + 301805 302111 AluSp 311 + 0 308 99717 64 1 3 241 chain 25801 chr11 135006516 + 302427 302749 MER4E1 777 - 346 690 100864 79 0 19 109 1 0 35 1 0 4 0 5 93 chain 53278 chr11 135006516 + 309457 310164 LTR30 714 - 13 714 56842 10 1 0 19 1 0 126 13 12 139 10 0 141 6 11 183 0 2 58 chain 55035 chr11 135006516 + 316783 317577 MER4E1 777 - 0 777 55689 55 1 0 136 16 0 49 14 3 21 3 6 15 5 1 54 0 1 81 1 7 16 0 4 77 0 1 8 1 0 17 2 1 205 0 2 17 chain 79055 chr11 135006516 + 324821 325786 LTR13A 966 - 0 966 44028 22 1 0 270 0 1 169 0 5 38 1 0 266 0 1 105 9 1 9 1 5 74 chain 22751 chr11 135006516 + 328565 328836 AluSp 311 - 18 290 116821 102 0 1 169 chain 26709 chr11 135006516 + 333773 334167 LTR7 482 - 7 482 97289 42 13 14 113 0 1 13 0 31 40 10 0 7 4 14 49 0 50 49 2 0 52 chain 15813 chr11 135006516 + 341491 341755 MSTA 426 + 6 296 138916 94 28 56 79 24 22 39 chain 3095 chr11 135006516 + 345011 345098 MER57E1 380 - 294 380 223022 17 40 39 30 chain 24522 chr11 135006516 + 346953 347247 AluY 311 + 5 311 107427 127 0 1 98 0 11 69 chain 60264 chr11 135006516 + 347588 349098 MER41-int 2638 + 1162 2091 52702 61 0 1 39 0 5 22 309 14 22 4 5 15 0 5 106 9 20 15 1 5 168 0 1 37 337 29 143 2 0 35 13 9 172 chain 34441 chr11 135006516 + 350263 350711 LTR2 463 - 0 463 77006 52 0 4 174 0 10 11 0 1 4 5 0 62 5 1 73 1 10 61 chain 7764 chr11 135006516 + 351730 351828 MER41A 554 - 0 103 172515 81 0 5 17 chain 26923 chr11 135006516 + 351828 352133 AluYf5 307 + 0 298 96541 126 7 0 172 chain 70537 chr11 135006516 + 353858 355122 LTR13A 966 - 0 926 48141 270 0 1 73 326 0 18 0 12 88 0 5 42 1 0 292 48 0 35 0 2 14 0 6 29 0 9 17 0 2 11 chain 86994 chr11 135006516 + 361379 362388 LTR13 1007 - 0 1007 40783 31 3 1 56 1 0 4 0 1 482 5 4 42 0 1 385 chain 25108 chr11 135006516 + 365637 365941 AluSp 311 - 7 311 104241 304 chain 4357 chr11 135006516 + 386523 386597 MER52D 1964 + 1131 1207 202480 18 13 15 43 chain 77022 chr11 135006516 + 389003 389946 LTR13A 966 - 0 966 44956 150 8 9 68 0 4 21 10 19 191 0 5 42 1 0 262 0 1 117 0 4 73 chain 12680 chr11 135006516 + 440483 440667 7SLRNA 320 - 100 294 149537 95 24 34 65 chain 25078 chr11 135006516 + 486560 486859 AluY 311 + 0 294 104414 133 6 1 160 chain 4744 chr11 135006516 + 513845 513899 Tigger1 2417 + 2083 2137 197986 54 chain 106375 chr11 135006516 + 516873 518173 SVA_A 1864 + 26 1856 35158 487 1 454 108 28 25 8 0 36 40 1 4 87 0 37 259 0 2 276 0 2 5 chain 4029 chr11 135006516 + 565222 565264 MER30 238 - 0 42 206944 42 chain 22612 chr11 135006516 + 572288 572568 AluYf4 310 - 16 302 117528 65 0 2 19 2 1 84 7 0 14 1 13 88 chain 76643 chr11 135006516 + 573666 574603 LTR13A 966 + 0 966 45146 76 0 4 74 1 4 303 1 0 38 0 5 227 0 4 122 1 0 8 0 4 11 5 17 47 1 0 22 chain 24005 chr11 135006516 + 590711 591002 AluSp 311 - 20 311 110303 291 chain 8025 chr11 135006516 + 661917 662014 MER30 238 + 0 97 170904 97 chain 17606 chr11 135006516 + 667539 667813 AluSc5 308 + 20 285 133978 33 40 34 31 2 0 13 1 0 154 chain 20106 chr11 135006516 + 684146 684389 AluSz 310 + 11 254 126803 243 chain 24562 chr11 135006516 + 732115 732396 AluY 311 + 5 287 107183 127 0 1 154 chain 3553 chr11 135006516 + 739492 739531 L1MB3 1562 - 83 122 214485 39 chain 25617 chr11 135006516 + 740271 740587 AluY 311 + 0 303 101633 118 3 0 15 1 0 155 9 0 15 chain 18634 chr11 135006516 + 741612 741901 MER41B 635 - 133 415 131124 20 38 30 99 5 6 127 chain 28006 chr11 135006516 + 744559 744861 AluYf4 310 + 0 301 92980 134 1 0 167 chain 25711 chr11 135006516 + 805821 806118 AluSg 306 + 3 300 101244 297 chain 4904 chr11 135006516 + 878576 878632 MSTC 436 + 368 424 196237 56 chain 39269 chr11 135006516 + 943120 943579 LTR2 463 - 0 463 70371 52 0 4 407 chain 23861 chr11 135006516 + 989046 989346 AluSp 311 + 0 295 111122 27 0 7 74 6 0 103 6 0 84 chain 35975 chr11 135006516 + 1112362 1112775 L1PA4 6152 - 11 425 74920 59 0 1 41 0 1 42 0 1 104 1 0 80 1 0 85 chain 14255 chr11 135006516 + 1138651 1138961 L1PB1 5432 - 37 318 143697 4 1 0 21 1 0 20 33 28 14 18 8 4 1 0 16 2 1 42 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 chain 43985 chr11 135006516 + 1231236 1231746 MER9a3 513 + 0 513 64219 110 0 1 343 0 2 57 chain 24781 chr11 135006516 + 1238989 1239282 AluSc 308 + 5 298 105987 293 chain 25496 chr11 135006516 + 1285960 1286307 THE1A 353 - 0 353 102242 18 9 15 61 1 0 149 1 0 44 0 2 64 chain 120701 chr11 135006516 + 1286320 1288193 THE1A-int 1579 - 14 1577 30798 801 11 10 273 6 3 5 0 3 31 313 1 13 7 9 119 6 5 276 0 2 12 chain 27565 chr11 135006516 + 1288194 1288536 THE1A 353 - 0 340 94451 155 1 0 88 1 0 97 chain 10474 chr11 135006516 + 1303578 1303708 L1PA4 6152 + 6019 6146 158371 122 3 0 5 chain 10113 chr11 135006516 + 1303733 1303855 L1PA4 6152 + 6019 6141 160025 122 chain 9617 chr11 135006516 + 1303902 1304010 L1PA4 6152 + 6033 6141 162499 108 chain 10444 chr11 135006516 + 1304047 1304174 L1PA4 6152 + 6019 6146 158517 27 0 3 92 3 0 5 chain 18613 chr11 135006516 + 1343221 1343583 THE1B 368 - 0 368 131181 12 1 0 4 0 1 15 1 0 17 9 5 5 0 3 66 18 31 9 1 0 7 34 28 42 14 15 20 0 1 87 chain 32263 chr11 135006516 + 1347476 1347865 LTR71A 459 - 68 459 80419 93 0 1 96 0 1 200 chain 12022 chr11 135006516 + 1359635 1359939 THE1D 372 + 0 332 152112 37 19 10 17 14 15 18 8 9 22 4 0 7 67 105 72 0 1 19 chain 3194 chr11 135006516 + 1375937 1375973 MER63A 208 + 102 138 221045 36 chain 26876 chr11 135006516 + 1376843 1377145 AluYa5 310 - 2 302 96718 176 2 0 124 chain 7991 chr11 135006516 + 1379953 1380110 L1PB1 5432 + 5207 5346 171113 13 2 1 16 1 0 44 1 0 15 4 0 15 8 0 16 3 1 4 1 0 14 chain 46315 chr11 135006516 + 1387603 1388116 MER9a1 513 - 0 513 61758 513 chain 20520 chr11 135006516 + 1427418 1427679 AluY 311 + 0 260 125568 53 5 12 63 8 0 132 chain 36332 chr11 135006516 + 1631669 1632107 LTR2 463 - 0 451 74461 24 1 0 28 1 0 29 0 1 295 0 14 60 chain 9478 chr11 135006516 + 1634313 1634424 L1PA4 6152 - 1 113 163168 99 0 1 12 chain 4267 chr11 135006516 + 1636205 1636287 L1MD1 2063 + 1564 1638 203654 35 1 8 7 15 0 24 chain 14891 chr11 135006516 + 1654326 1654515 LTR43 600 - 211 400 141656 189 chain 73534 chr11 135006516 + 1664898 1665897 LTR13 1007 + 0 1007 46772 65 4 0 8 6 4 272 50 51 286 1 15 110 6 7 143 0 2 6 2 0 6 3 1 31 chain 49830 chr11 135006516 + 1724950 1725498 L1PA5 6144 + 5580 6128 59132 548 chain 17127 chr11 135006516 + 1734000 1734379 L1PB3 3668 - 72 423 135242 14 24 19 34 3 1 24 7 4 14 51 35 60 11 10 84 10 9 43 chain 3552 chr11 135006516 + 1741168 1741208 MADE1 96 + 52 92 214513 40 chain 6094 chr11 135006516 + 1790876 1790945 L1PA6 6164 + 6086 6155 184464 69 chain 10946 chr11 135006516 + 1791016 1791156 LTR8 732 + 586 732 156421 63 1 7 76 chain 20715 chr11 135006516 + 1821951 1822184 L1PA4 6152 - 12 246 124915 136 0 1 97 chain 4083 chr11 135006516 + 1834569 1834767 MER44D 709 - 39 280 206166 14 52 66 42 71 100 19 chain 4009 chr11 135006516 + 1841138 1841217 MER58A 224 - 147 224 207251 31 11 11 11 0 1 6 3 0 17 chain 43542 chr11 135006516 + 1923876 1924440 MER41A 554 - 0 554 64750 50 9 3 73 0 1 54 0 1 52 7 0 227 1 2 91 chain 28719 chr11 135006516 + 2067066 2067456 MLT2A1 477 - 0 469 90252 50 1 81 142 0 1 23 0 1 7 7 4 160 chain 18281 chr11 135006516 + 2099754 2099968 L1PA5 6144 - 6 219 132125 149 1 0 64 chain 8073 chr11 135006516 + 2247389 2247535 L1PA16 3655 + 2785 2930 170631 35 11 12 56 11 10 24 1 0 8 chain 24318 chr11 135006516 + 2247538 2247839 AluY 311 + 0 297 108553 36 6 1 95 0 1 164 chain 5626 chr11 135006516 + 2261226 2261351 L1MC3 1789 + 1194 1307 188813 31 49 37 45 chain 5722 chr11 135006516 + 2302539 2302650 MER96B 391 - 57 167 187909 43 2 0 23 22 23 21 chain 86836 chr11 135006516 + 2307113 2308122 LTR13 1007 - 0 1006 40843 703 1 0 200 6 0 7 0 6 8 0 3 6 6 1 72 chain 6608 chr11 135006516 + 2342963 2343057 U6 107 + 16 107 180393 43 4 1 47 chain 117718 chr11 135006516 + 2343057 2344646 L1PA11 4918 + 3008 4578 31889 146 1 0 231 2 16 264 0 1 662 14 0 13 1 0 52 13 14 60 7 5 15 1 0 21 4 0 9 8 3 10 23 19 5 1 0 13 2 0 11 chain 3986 chr11 135006516 + 2346076 2346121 Tigger3b 1229 - 1135 1180 207607 45 chain 154526 chr11 135006516 + 2353015 2354721 SVA_F 1814 + 10 1814 24040 695 0 40 192 1 0 9 1 16 131 0 49 127 6 9 384 8 0 152 chain 5311 chr11 135006516 + 2356293 2356354 LTR10E 629 + 22 83 191913 61 chain 47246 chr11 135006516 + 2359743 2361228 LTR10C 591 + 0 591 61002 29 1 0 221 437 0 43 0 4 68 460 0 226 chain 26297 chr11 135006516 + 2360008 2360430 LTR7B 505 - 10 505 98842 41 14 13 54 0 1 14 8 7 59 0 88 23 44 20 60 0 10 105 chain 37835 chr11 135006516 + 2360548 2361001 LTR7 482 + 0 482 72359 56 2 0 198 1 0 4 4 36 188 chain 9054 chr11 135006516 + 2393867 2393978 HY1 111 + 0 111 165286 111 chain 23872 chr11 135006516 + 2438405 2438690 AluSc8 310 + 6 290 111072 125 1 0 159 chain 22184 chr11 135006516 + 2496902 2497231 THE1B 368 + 29 367 119428 15 4 20 108 15 14 13 4 0 94 1 0 21 1 0 53 chain 125244 chr11 135006516 + 2499927 2501500 THE1B-int 1605 - 0 1605 29311 9 0 1 55 9 9 622 0 1 438 0 1 14 1 26 263 0 1 74 0 1 73 0 2 15 chain 23374 chr11 135006516 + 2501500 2501873 THE1B 368 - 0 368 113790 124 9 8 6 1 0 12 9 13 12 24 17 34 1 0 26 4 5 111 chain 467297 chr11 135006516 + 2513588 2519747 L1PA8 5853 - 0 5801 8139 60 0 1 32 1 0 19 2 1 47 13 11 73 2 0 43 0 2 14 3 9 26 1 0 216 11 8 204 2 0 78 0 2 16 0 4 33 0 1 252 0 1 117 0 2 365 2 1 22 4 6 324 0 1 300 0 7 170 0 1 257 0 1 179 9 13 52 2 0 726 1 3 108 332 0 19 17 0 16 0 1 346 0 18 79 1 2 625 0 1 281 1 0 60 11 10 279 18 6 70 1 2 118 53 17 13 1 0 10 2 0 20 chain 67277 chr11 135006516 + 2521441 2522243 L1PA7 6471 + 5647 6450 49531 26 2 1 250 1 2 394 0 1 129 chain 28065 chr11 135006516 + 2524623 2524931 L1PA4 6152 + 5845 6152 92770 151 1 0 156 chain 26875 chr11 135006516 + 2582170 2582460 AluYf4 310 + 20 310 96720 290 chain 2820 chr11 135006516 + 2616641 2616671 Tigger1 2417 + 54 84 228475 30 chain 13823 chr11 135006516 + 2624327 2624537 Tigger1a_Art 216 - 2 216 145170 20 1 2 95 0 5 39 1 0 6 7 6 41 chain 3030 chr11 135006516 + 2624807 2624853 L1MB7 1623 - 26 67 224369 35 5 0 6 chain 37864 chr11 135006516 + 2641756 2642780 L1PA16 3655 - 240 903 72324 125 2 0 89 2 1 104 8 7 45 496 141 81 2 0 70 chain 541835 chr11 135006516 + 2655404 2661579 L1PA5 6144 - 3 6144 2534 137 7 0 14 2 0 185 1 0 386 2 0 125 0 1 671 1 0 311 1 0 1059 0 5 51 1 0 292 2 0 396 0 2 123 0 4 272 0 4 549 39 0 516 0 2 598 0 5 312 6 5 116 chain 26069 chr11 135006516 + 2921640 2921949 AluY 311 + 0 309 99752 52 2 1 85 7 8 163 chain 19139 chr11 135006516 + 2926663 2926890 L1PA5 6144 - 251 482 129711 57 0 4 170 chain 69516 chr11 135006516 + 2927291 2928101 L1PA6 6164 + 5346 6161 48600 244 0 1 261 1 5 159 1 2 4 1 0 139 chain 22489 chr11 135006516 + 2946791 2947092 AluSc 308 + 0 295 118065 125 7 1 14 13 13 142 chain 9103 chr11 135006516 + 2995367 2995475 L1PA4 6152 - 0 113 165054 6 0 5 102 chain 12964 chr11 135006516 + 3017932 3018219 AluSp 311 - 7 166 148374 115 128 0 44 chain 24107 chr11 135006516 + 3034390 3034671 AluSp 311 - 18 301 109707 53 0 2 228 chain 83628 chr11 135006516 + 3048675 3049681 LTR13 1007 + 0 1007 42060 305 1 0 76 2 3 301 0 2 125 0 1 143 22 20 31 chain 36652 chr11 135006516 + 3084480 3084935 THE1A-int 1579 + 1112 1565 74021 17 5 3 147 2 1 4 0 1 280 chain 57381 chr11 135006516 + 3086758 3088263 L1P4 1494 - 57 928 54296 22 6 3 19 10 8 14 1 0 4 0 1 17 1 0 379 4 19 164 1 4 37 700 54 126 chain 5449 chr11 135006516 + 3097036 3097110 MER4E 760 + 19 90 190535 6 3 0 65 chain 6738 chr11 135006516 + 3121192 3121267 AluSp 311 + 226 301 179410 75 chain 33484 chr11 135006516 + 3131792 3132226 MER4A1 472 + 0 470 78434 10 0 4 7 0 1 7 1 0 24 3 2 165 0 1 11 0 21 74 0 9 30 0 2 102 chain 209272 chr11 135006516 + 3136408 3139387 MER4-int 2692 + 1 2687 18544 14 1 0 21 2 0 53 0 1 9 2 0 6 9 10 10 1 0 196 0 6 228 0 10 47 1 7 13 0 1 21 0 3 68 7 1 144 0 4 17 6 0 28 0 1 22 1 0 188 0 1 270 315 0 75 1 7 639 0 1 153 2 0 6 0 2 403 chain 32214 chr11 135006516 + 3139395 3140155 MER4A1 472 + 0 472 80495 14 0 2 70 2 1 143 3 25 141 8 10 9 313 0 57 chain 25822 chr11 135006516 + 3146769 3147062 AluY 311 + 16 307 100778 92 0 1 192 3 0 6 chain 10184 chr11 135006516 + 3176031 3176140 L1PA5 6144 + 6019 6128 159700 109 chain 27289 chr11 135006516 + 3201310 3201664 THE1A 353 - 0 353 95307 18 0 2 131 2 0 92 7 6 104 chain 10081 chr11 135006516 + 3207158 3207295 L1PA8 5853 - 10 145 160170 50 0 1 32 1 0 19 3 1 32 chain 7721 chr11 135006516 + 3261971 3262067 MER4B 649 - 347 442 172778 11 1 0 84 chain 24378 chr11 135006516 + 3268987 3269272 AluY 311 + 19 305 108203 113 0 1 172 chain 41258 chr11 135006516 + 3272470 3273028 LTR10A 586 + 0 586 67581 141 2 0 5 0 1 55 9 39 40 1 2 220 8 6 77 chain 540597 chr11 135006516 + 3285285 3292137 L1PA7 6471 - 10 6468 2719 234 0 3 521 2 3 15 328 0 61 0 3 198 8 0 465 54 0 35 0 6 140 0 3 471 0 2 88 14 14 188 2 0 458 0 4 445 0 4 467 0 1 111 1 3 488 0 1 66 0 2 179 0 1 390 0 3 39 1 0 567 2 1 198 7 0 171 3 0 18 25 0 196 4 3 192 chain 27817 chr11 135006516 + 3292894 3293188 AluYd8 298 - 4 298 93644 294 chain 7567 chr11 135006516 + 3296114 3296250 MER57B2 428 + 12 148 173753 66 1 29 10 28 0 31 chain 8628 chr11 135006516 + 3301411 3301519 L1PA11 4918 - 411 516 167599 19 1 0 14 2 0 72 chain 41166 chr11 135006516 + 3318273 3318831 LTR10A 586 + 0 586 67689 141 2 0 5 0 1 55 9 39 40 1 2 220 8 6 77 chain 542376 chr11 135006516 + 3331114 3337957 L1PA7 6471 - 10 6468 2450 234 0 3 521 2 3 15 327 0 61 0 3 663 54 0 35 0 6 140 0 3 471 0 2 88 14 14 188 2 0 458 0 4 445 0 4 467 0 1 111 1 3 488 0 1 66 0 2 179 0 1 390 0 3 39 1 0 567 2 1 198 7 0 171 3 0 18 25 0 196 4 3 192 chain 27686 chr11 135006516 + 3338714 3339008 AluYd8 298 - 4 298 94096 294 chain 7342 chr11 135006516 + 3341933 3342069 MER57B2 428 + 12 148 175142 66 1 29 10 28 0 31 chain 8628 chr11 135006516 + 3347226 3347334 L1PA11 4918 - 411 516 167598 19 1 0 14 2 0 72 chain 13304 chr11 135006516 + 3375199 3375866 HERVFH21-int 991 - 82 503 147070 29 73 20 42 1 0 8 5 1 20 18 0 13 15 9 14 12 6 17 265 115 6 1 0 19 1 0 6 7 5 6 1 0 7 1 0 31 3 1 46 chain 25307 chr11 135006516 + 3387215 3387512 AluY 311 + 10 301 103182 108 7 0 14 0 1 168 chain 85059 chr11 135006516 + 3415781 3416797 LTR5A 1029 - 0 1029 41491 882 0 13 134 chain 83390 chr11 135006516 + 3418351 3419318 SVA_D 2077 + 342 2077 42162 179 9 239 148 1 0 13 0 539 617 chain 29536 chr11 135006516 + 3420014 3420423 LTR7 482 + 0 482 86495 69 8 46 109 3 4 27 5 37 100 0 2 88 chain 4441 chr11 135006516 + 3428050 3428118 MADE1 96 - 0 96 201437 40 4 32 24 chain 91529 chr11 135006516 + 3455363 3456731 LTR12C 1709 - 0 1709 39122 69 20 19 81 1 0 312 11 4 15 24 0 25 0 207 129 0 118 243 25 23 85 5 48 30 51 52 206 12 19 24 chain 28928 chr11 135006516 + 3466651 3467047 MER1A 529 - 88 488 89336 37 7 12 130 1 0 170 4 0 6 2 6 39 chain 89007 chr11 135006516 + 3468655 3469679 LTR5A 1029 - 0 1029 40001 137 0 1 262 0 1 70 0 1 408 1 0 56 0 1 77 1 3 12 chain 89476 chr11 135006516 + 3477182 3478209 LTR5A 1029 - 0 1029 39815 246 0 3 630 1 0 150 chain 73098 chr11 135006516 + 3492562 3493605 MER11C 1089 - 26 1089 46980 25 1 4 118 2 1 51 0 1 118 1 2 5 0 1 38 1 0 4 1 5 112 44 43 149 1 0 65 0 4 23 37 47 247 chain 12979 chr11 135006516 + 3494209 3494754 HERVH-int 3825 - 0 550 14513 240 0 4 125 0 1 9 3 0 7 9 12 152 chain 41807 chr11 135006516 + 3494758 3495255 LTR2C 499 - 0 499 66886 64 1 0 182 1 0 72 3 6 64 0 1 110 chain 331074 chr11 135006516 + 3497905 3501853 HERVE-int 4064 - 4 4064 12159 654 2 0 1034 5 0 837 1 2 29 0 117 315 1 0 6 0 1 251 1 2 812 chain 74397 chr11 135006516 + 3502941 3506065 HERVH-int 3825 - 550 3825 14513 824 1 49 305 0 5 32 4 0 1030 0 1 250 1 0 10 28 29 11 1 19 6 0 2 7 63 0 39 36 179 95 0 2 47 1 0 333 chain 3330 chr11 135006516 + 3507195 3507310 MER5A1 166 + 22 136 218405 16 6 7 12 46 44 35 chain 529835 chr11 135006516 + 3514197 3520281 L1PA4 6152 - 9 6152 4208 733 0 3 23 1 0 377 0 1 662 0 1 402 0 1 108 0 1 57 0 1 686 1 0 906 0 2 237 0 4 910 0 18 116 0 27 144 0 1 160 0 1 561 chain 2876 chr11 135006516 + 3524835 3524868 MLT1I 406 + 367 400 227420 33 chain 47571 chr11 135006516 + 3530577 3531129 LTR6B 557 - 0 557 60791 189 0 5 363 chain 41262 chr11 135006516 + 3537464 3538019 LTR6B 557 - 0 557 67579 49 0 2 444 34 34 28 chain 5822 chr11 135006516 + 3538729 3538833 MER58A 224 - 109 211 186924 20 2 3 45 3 4 8 4 0 22 chain 75864 chr11 135006516 + 3540705 3541784 MER11A 1151 + 0 1144 45565 55 0 99 76 1 0 64 4 0 149 0 1 94 0 1 145 5 6 147 24 0 10 8 15 21 18 0 37 0 1 60 30 32 131 chain 9107 chr11 135006516 + 3545524 3545639 LTR2 463 - 107 222 165035 115 chain 32627 chr11 135006516 + 3565703 3566145 HERVK-int 6823 + 5138 5581 79804 21 0 1 4 4 3 105 0 3 198 1 0 4 0 1 36 1 0 9 5 4 54 chain 87410 chr11 135006516 + 3566581 3567605 LTR5A 1029 + 0 1029 40603 150 1 0 40 0 1 592 0 3 181 0 2 60 chain 19348 chr11 135006516 + 3591918 3592178 L1PA8 5853 + 5586 5841 129077 20 6 4 69 1 0 61 2 1 19 1 0 81 chain 11649 chr11 135006516 + 3595130 3595281 L1MA8 2339 + 1934 2082 153700 20 2 0 55 1 0 73 chain 108991 chr11 135006516 + 3609774 3611170 LTR12C 1709 + 0 1709 34446 259 1 2 29 7 8 40 0 43 83 0 3 183 0 278 184 1 0 4 4 2 100 1 0 6 11 4 333 1 0 66 1 0 82 chain 81438 chr11 135006516 + 3614888 3615915 LTR5A 1029 - 0 1029 42996 569 0 1 307 6 5 9 0 2 136 chain 27227 chr11 135006516 + 3623907 3624315 Tigger1 2417 - 1403 1815 95509 52 0 1 75 3 0 6 30 32 122 14 15 12 0 3 94 chain 32593 chr11 135006516 + 3665753 3666192 LTR2 463 - 0 463 79861 88 14 15 177 0 21 68 8 0 30 0 10 54 chain 24812 chr11 135006516 + 3669178 3669536 LTR7 482 + 0 482 105824 63 0 89 72 8 40 25 5 6 124 12 14 49 chain 295804 chr11 135006516 + 3669538 3673203 HERVH-int 3825 + 0 3825 13655 535 13 8 27 1 0 10 1 0 24 28 0 14 1 0 13 21 18 47 2 1 82 1 0 60 1 4 258 0 2 123 15 0 205 9 0 9 0 2 10 0 2 15 2 1 1600 14 19 30 0 210 73 0 1 163 2 1 31 0 2 225 chain 28014 chr11 135006516 + 3674457 3674866 LTR7 482 + 0 482 92950 69 8 46 109 8 9 25 5 37 124 12 14 49 chain 6453 chr11 135006516 + 3685047 3685140 HY4 93 - 0 92 181616 27 9 8 57 chain 22863 chr11 135006516 + 3705170 3705466 AluSq2 311 + 15 308 116272 112 3 1 6 1 0 174 chain 7477 chr11 135006516 + 3713276 3713378 U13 108 + 6 108 174290 34 0 2 5 2 0 61 chain 15392 chr11 135006516 + 3731026 3731209 L1PA3long 6157 + 5978 6153 140227 41 8 0 134 chain 28476 chr11 135006516 + 3770256 3770554 AluYb8 318 + 0 298 91283 298 chain 3972 chr11 135006516 + 3802624 3802671 U7 62 + 0 47 207797 47 chain 8133 chr11 135006516 + 3814391 3814488 Charlie1a 1436 + 1002 1099 170316 97 chain 19601 chr11 135006516 + 3827977 3828280 AluSx 319 + 8 299 128381 145 0 1 17 0 32 11 32 0 78 13 0 7 chain 3489 chr11 135006516 + 3830240 3830278 MIRb 242 + 94 132 215525 38 chain 26138 chr11 135006516 + 3903322 3903618 AluSp 311 - 5 301 99447 296 chain 238232 chr11 135006516 + 3918744 3921346 L1PA3long 6157 - 0 2600 16869 148 6 4 353 0 1 333 1 0 1761 chain 36925 chr11 135006516 + 3921352 3921809 L1P1 4361 - 3902 4360 73625 392 1 2 64 chain 8258 chr11 135006516 + 3983568 3983675 L1PB4 2604 - 107 213 169632 87 1 0 19 chain 17357 chr11 135006516 + 3996575 3996819 AluSz6 309 + 11 254 134639 122 2 0 5 16 17 99 chain 26758 chr11 135006516 + 3999378 3999676 AluSp 311 - 12 310 97135 298 chain 556554 chr11 135006516 + 4020821 4026969 L1PA3long 6157 + 0 6157 665 221 4 0 486 0 1 3381 0 1 216 3 1 337 0 5 660 1 5 513 0 3 128 0 1 198 chain 511486 chr11 135006516 + 4031949 4038436 L1PA6 6164 - 2 6164 6028 11 5 0 140 0 1 567 6 0 196 0 2 1422 0 1 115 0 2 6 1 0 318 34 3 105 1 35 15 0 1 15 330 0 17 0 1 860 1 2 92 1 2 216 0 1 158 0 5 410 0 2 632 1 18 222 1 0 101 36 18 145 1 0 86 1 0 219 chain 29581 chr11 135006516 + 4039397 4039716 AluYb8 318 + 0 316 86269 132 3 0 184 chain 8518 chr11 135006516 + 4042132 4042312 L1MA6 2487 - 577 758 168201 28 53 52 87 1 3 11 chain 20184 chr11 135006516 + 4057665 4058031 L1PA11 4918 - 340 681 126581 11 2 1 11 4 3 13 31 22 9 4 0 19 1 0 16 2 0 65 2 1 12 11 10 55 4 0 6 1 0 87 chain 11266 chr11 135006516 + 4058031 4058192 L1PA11 4918 + 4089 4255 154674 95 12 17 54 chain 171674 chr11 135006516 + 4073045 4074971 L1PA5 6144 + 4191 6144 21859 472 0 19 609 0 8 845 chain 10802 chr11 135006516 + 4121563 4121691 Tigger4a 237 - 0 128 156981 128 chain 31445 chr11 135006516 + 4137191 4137537 HERV-Fc1_LTR1 345 - 0 345 81742 65 1 0 280 chain 105798 chr11 135006516 + 4158013 4159299 SVA_D 2077 - 13 1364 35304 619 0 1 49 1 0 6 0 1 132 50 0 218 2 4 80 0 36 15 2 0 5 0 40 20 0 39 76 1 0 10 chain 3074 chr11 135006516 + 4158820 4158870 SVA_D 2077 - 997 1048 139720 44 1 2 5 chain 3092 chr11 135006516 + 4159299 4159339 SVA_D 2077 - 850 890 82239 40 chain 14403 chr11 135006516 + 4180036 4180280 MER4D0 881 - 95 393 143201 32 1 2 36 30 80 83 17 20 45 chain 89638 chr11 135006516 + 4180313 4181301 L1PA3long 6157 + 5165 6157 39769 145 0 4 843 chain 19340 chr11 135006516 + 4184041 4184366 L1PA15 4387 - 60 376 129109 12 3 1 39 22 19 39 1 0 12 5 1 19 3 1 54 0 4 22 1 0 93 chain 545859 chr11 135006516 + 4191482 4197505 L1PA3long 6157 - 7 6157 1967 498 0 1 1016 1 0 1371 0 2 2356 1 129 556 4 0 68 0 1 152 chain 10869 chr11 135006516 + 4199608 4199761 L1MA4A 3247 - 2993 3143 156702 42 9 6 102 chain 3484 chr11 135006516 + 4216896 4216957 L1MC4 1079 - 911 970 215608 23 12 10 26 chain 100290 chr11 135006516 + 4220719 4222051 L1PB2 3958 - 120 1479 36695 63 2 1 95 1 0 62 1 0 70 4 2 93 3 0 13 2 0 62 4 0 16 1 0 54 2 0 94 0 4 193 0 38 53 1 0 124 0 3 319 chain 21781 chr11 135006516 + 4239468 4239723 L1PA6 6164 + 5891 6146 121098 255 chain 261831 chr11 135006516 + 4242196 4246098 HERVH-int 3825 - 0 3825 15599 407 9 10 78 0 210 241 0 19 44 2 4 121 5 1 304 0 6 279 10 15 82 0 4 220 0 1 58 1 2 116 4 3 129 346 6 23 5 0 6 9 5 205 15 0 326 0 1 119 58 0 26 0 150 24 23 22 12 0 1 13 1 0 47 1 0 9 57 3 93 11 16 31 1 0 51 0 2 280 chain 31887 chr11 135006516 + 4246108 4246547 LTR7 482 - 7 482 81031 151 0 10 8 0 1 8 0 31 17 1 0 23 0 1 110 21 15 100 chain 7939 chr11 135006516 + 4253387 4253488 MER6 865 - 190 291 171386 101 chain 110539 chr11 135006516 + 4258367 4259824 SVA_B 1603 + 0 1603 34068 20 16 0 22 7 10 513 0 1 4 2 1 27 0 2 24 16 13 34 48 9 25 2 42 31 24 184 14 1 0 627 chain 8378 chr11 135006516 + 4264898 4264999 MER6 865 + 574 675 168975 101 chain 20773 chr11 135006516 + 4273095 4273342 L1PA6 6164 - 18 265 124703 247 chain 91015 chr11 135006516 + 4280397 4281830 L1MA2 4263 - 157 1522 39284 34 2 3 11 31 0 11 0 1 81 2 1 6 1 0 152 22 21 5 2 0 105 25 13 69 73 68 289 40 21 17 0 1 6 1 0 287 0 4 131 2 0 28 chain 426979 chr11 135006516 + 4284858 4289728 L1PA4 6152 + 1262 6143 9372 1903 1 0 351 3 1 863 0 1 649 0 9 48 0 11 890 7 0 155 chain 21401 chr11 135006516 + 4295469 4295728 L1PREC2 3366 + 469 728 122509 259 chain 22009 chr11 135006516 + 4296065 4296321 L1PA5 6144 - 289 550 120187 153 0 5 103 chain 21027 chr11 135006516 + 4296321 4296585 L1PA5 6144 + 5855 6122 123823 7 0 5 119 4 0 9 4 6 121 chain 4928 chr11 135006516 + 4298547 4298605 MER6 865 - 190 248 195952 58 chain 115804 chr11 135006516 + 4303783 4305261 SVA_B 1603 + 0 1603 32526 21 0 2 19 7 10 513 0 1 4 2 1 27 0 2 27 65 23 132 2 124 10 8 4 20 1 43 620 chain 2911 chr11 135006516 + 4304403 4304436 SVA_B 1603 + 548 581 179012 33 chain 4928 chr11 135006516 + 4310642 4310700 MER6 865 + 617 675 195951 58 chain 22201 chr11 135006516 + 4311891 4312174 AluSq2 311 + 4 284 119346 119 2 0 57 1 0 104 chain 20378 chr11 135006516 + 4312661 4312925 L1PA5 6144 - 22 289 125967 121 15 13 121 0 5 7 chain 22915 chr11 135006516 + 4312925 4313181 L1PA5 6144 + 5594 5855 116033 103 0 5 153 chain 21410 chr11 135006516 + 4313517 4313776 L1PREC2 3366 - 2638 2897 122476 259 chain 429758 chr11 135006516 + 4319514 4324381 L1PA4 6152 - 9 4890 9313 143 18 11 891 0 11 50 0 9 649 0 1 3116 chain 83242 chr11 135006516 + 4327405 4328750 L1MA2 4263 + 2741 4058 42236 34 2 0 125 0 4 287 1 0 6 0 1 17 14 1 14 13 6 241 0 1 8 7 8 31 66 61 76 31 19 99 2 0 5 22 21 91 34 43 18 1 0 6 2 1 81 0 1 11 chain 20709 chr11 135006516 + 4335881 4336128 L1PA6 6164 + 5899 6146 124932 247 chain 19891 chr11 135006516 + 4338029 4338248 AluYb8 318 + 104 318 127515 22 5 0 192 chain 257202 chr11 135006516 + 4338836 4342682 HERVH-int 3825 - 0 3825 15865 407 9 10 78 0 210 241 0 19 48 0 1 120 5 1 304 0 6 279 10 15 82 0 4 220 0 1 176 4 3 129 346 6 23 5 0 6 9 5 205 15 0 326 0 1 119 117 0 23 0 1 28 0 207 36 9 12 93 11 16 31 1 0 51 25 27 184 6 5 4 0 1 61 chain 32092 chr11 135006516 + 4342692 4343131 LTR7 482 - 7 482 80708 151 0 10 8 0 1 8 0 31 17 1 0 23 0 1 110 21 15 100 chain 7644 chr11 135006516 + 4349964 4350065 MER6 865 - 190 291 173260 101 chain 113442 chr11 135006516 + 4355149 4356622 SVA_B 1603 - 0 1603 33240 540 1 38 6 0 40 26 14 19 27 0 1 28 0 76 122 38 75 99 77 0 454 7 10 19 0 8 15 chain 4928 chr11 135006516 + 4361804 4361862 MER6 865 + 617 675 195950 58 chain 22070 chr11 135006516 + 4363051 4363334 AluSq2 311 + 4 284 119923 119 2 0 57 1 0 104 chain 20378 chr11 135006516 + 4363821 4364085 L1PA5 6144 - 22 289 125966 121 15 13 121 0 5 7 chain 22701 chr11 135006516 + 4364085 4364341 L1PA5 6144 + 5594 5855 117070 103 0 5 153 chain 19727 chr11 135006516 + 4364675 4364915 L1PREC2 3366 - 2638 2878 128024 240 chain 429054 chr11 135006516 + 4370704 4375570 L1PA4 6152 - 9 4890 9332 137 7 0 908 0 11 50 0 9 649 0 1 606 1 0 255 3 1 351 1 0 149 1 0 51 2 7 1252 0 1 443 chain 90812 chr11 135006516 + 4378592 4380014 L1MA2 4263 + 2741 4106 39351 28 2 0 139 0 4 279 1 0 6 0 1 17 30 21 289 66 61 15 0 1 60 28 16 102 2 0 5 22 21 152 1 0 6 2 1 81 0 1 11 31 0 11 2 3 34 chain 95366 chr11 135006516 + 4416903 4418015 L1PA5 6144 - 12 1135 37995 93 0 3 149 1 0 592 0 4 144 0 5 133 chain 3884 chr11 135006516 + 4418015 4418056 L1P1 4361 + 1256 1297 209108 41 chain 7641 chr11 135006516 + 4421962 4422060 L1PA5 6144 - 2799 2896 173275 91 1 0 6 chain 527285 chr11 135006516 + 4422062 4428170 L1PA4 6152 - 11 6152 4468 12 0 1 132 1 0 687 0 8 941 0 4 191 0 4 479 2 0 281 0 1 235 1 0 274 0 2 490 0 8 49 4 6 380 0 1 9 1 0 525 1 6 178 0 2 200 0 1 341 1 0 102 27 27 564 chain 182477 chr11 135006516 + 4428280 4430549 L1PA7 6471 + 4188 6467 20744 13 0 1 55 0 1 154 0 4 540 0 5 22 7 8 214 6 0 143 1 0 76 0 1 80 4 0 97 8 16 45 14 2 105 1 6 100 0 11 405 5 6 154 5 0 15 chain 78329 chr11 135006516 + 4460646 4461550 L1PA5 6144 - 1033 1950 44200 396 1 0 42 0 1 194 0 2 125 1 13 44 1 0 100 chain 87803 chr11 135006516 + 4461550 4462551 L1PA5 6144 + 5132 6135 40449 162 1 0 565 0 3 273 chain 9155 chr11 135006516 + 4475078 4475201 MER50B 698 + 521 648 164790 22 0 1 60 1 4 40 chain 14484 chr11 135006516 + 4480664 4480870 LTR5B 1012 - 0 214 142931 7 0 2 74 2 4 12 5 9 106 chain 85350 chr11 135006516 + 4481704 4482703 LTR5B 1012 - 9 1009 41398 743 0 1 256 chain 4174 chr11 135006516 + 4499370 4499625 MLT1B-int 1170 + 533 719 204928 38 193 124 24 chain 19981 chr11 135006516 + 4528699 4528921 L1PA5 6144 + 5919 6141 127202 222 chain 19632 chr11 135006516 + 4541400 4541654 L1PA8A 6298 - 344 633 128307 34 0 1 30 3 35 168 1 0 12 0 3 6 chain 5349 chr11 135006516 + 4549703 4549774 L1MA2 4263 + 3957 4027 191551 9 1 0 61 chain 478008 chr11 135006516 + 4552667 4559088 L1PA6 6164 + 0 6161 7801 216 2 0 25 28 29 99 0 8 10 17 16 97 11 10 282 17 0 206 0 6 142 0 2 92 1 2 86 0 1 20 23 24 50 5 8 15 1 0 136 0 3 68 1 0 203 0 4 238 0 1 113 0 2 111 0 5 111 0 3 79 1 5 248 0 2 309 0 2 7 0 4 89 7 2 31 2 0 53 339 8 165 0 1 171 0 4 76 3 4 219 23 23 63 0 5 111 1 0 208 0 1 34 0 2 106 1 2 4 1 0 234 0 3 275 1 5 18 6 18 13 1 0 248 11 12 94 4 15 91 5 9 485 1 4 148 2 0 7 chain 115009 chr11 135006516 + 4569904 4571262 L1PA4 6152 - 1 1365 32792 51 0 4 93 0 6 104 0 1 399 0 3 52 2 0 42 0 3 20 0 1 18 18 0 45 2 6 395 0 4 117 chain 402157 chr11 135006516 + 4580963 4586651 L1PA8 5853 + 52 5847 10022 20 3 1 9 1 2 11 50 14 58 4 9 45 0 2 7 1 0 4 0 1 14 22 23 30 16 6 106 2 0 182 0 4 37 3 0 5 16 24 15 0 2 90 0 3 105 0 3 128 0 1 36 22 21 18 0 2 22 2 0 244 0 3 144 13 15 28 0 4 10 5 7 35 2 5 171 0 3 125 0 4 108 0 2 68 1 5 15 23 17 113 0 3 57 0 4 76 0 5 96 5 13 43 0 4 87 0 3 28 3 5 156 0 3 36 0 4 27 34 30 16 1 5 13 2 0 5 0 10 20 6 11 77 0 4 13 0 1 77 1 0 134 1 4 58 1 0 21 0 2 89 1 0 61 6 0 104 0 1 20 1 4 29 0 3 11 3 8 45 2 1 101 0 2 16 4 8 12 0 2 282 0 2 152 0 3 53 27 12 117 0 2 30 7 6 148 0 29 107 0 1 11 1 0 31 0 3 46 0 1 42 0 4 17 3 4 43 1 4 21 4 9 10 0 3 267 1 0 155 0 3 38 1 0 25 0 2 19 2 0 10 4 8 49 5 4 10 1 0 51 7 6 12 0 2 16 14 0 34 0 10 21 0 1 5 chain 38457 chr11 135006516 + 4617212 4617645 L1PA4 6152 + 5711 6143 71506 101 1 0 331 chain 4268 chr11 135006516 + 4624926 4624977 MER5A1 166 + 24 75 203649 51 chain 11020 chr11 135006516 + 4634239 4634365 L1PA4 6152 + 6025 6151 156126 126 chain 100101 chr11 135006516 + 4641071 4642152 L1PA2 6032 - 876 1957 36747 1081 chain 51353 chr11 135006516 + 4642152 4642718 L1PA2 6032 + 5287 6032 57749 186 0 179 380 chain 58622 chr11 135006516 + 4643766 4645022 HUERS-P3b-int 2065 - 1192 2052 53629 23 1 0 23 5 0 11 0 4 38 18 17 45 0 1 23 11 0 7 0 11 89 3 0 267 94 15 40 8 9 67 310 0 89 3 0 81 chain 52134 chr11 135006516 + 4650258 4651023 L1PA11 4918 - 340 1088 57537 11 2 0 13 1 0 14 31 23 9 4 0 20 1 0 16 2 0 78 2 1 265 2 5 123 7 6 164 chain 69826 chr11 135006516 + 4651023 4651881 L1PA8 5853 + 1618 2471 48464 49 8 11 181 1 2 47 0 9 101 16 0 133 2 0 320 chain 191244 chr11 135006516 + 4651882 4654343 L1PA8 5853 + 3526 5847 19938 158 5 1 259 144 0 390 0 1 473 0 1 4 1 0 141 0 1 50 1 4 207 0 9 339 1 0 44 2 0 65 25 23 48 1 0 103 chain 40101 chr11 135006516 + 4679977 4680485 HERV1_LTRa 508 - 0 508 69182 38 4 0 382 1 3 38 7 5 8 0 4 30 chain 3331 chr11 135006516 + 4695843 4695946 L1MA10 1535 + 1413 1500 218384 31 52 36 20 chain 10780 chr11 135006516 + 4743279 4743445 MSTA 426 + 252 426 157072 48 23 31 95 chain 39275 chr11 135006516 + 4762479 4762987 L1PA8A 6298 + 5777 6290 70359 54 0 1 146 5 8 180 3 4 13 0 1 4 1 0 102 chain 32536 chr11 135006516 + 4796303 4796706 L1PA10 4194 - 44 445 79966 34 3 0 34 0 1 332 chain 26544 chr11 135006516 + 4802535 4802813 AluYb8 318 + 40 318 97866 278 chain 22361 chr11 135006516 + 4804867 4805213 THE1B 368 + 0 345 118665 13 2 0 30 0 5 71 0 1 56 24 17 46 10 13 42 1 0 51 chain 49181 chr11 135006516 + 4827335 4827886 L1P1 4361 - 1601 2152 59611 551 chain 17609 chr11 135006516 + 4828356 4828558 L1PA6 6164 - 448 650 133968 202 chain 23473 chr11 135006516 + 4828564 4828834 L1PA6 6164 + 5722 5992 113256 270 chain 14104 chr11 135006516 + 4828836 4828997 L1PA6 6164 + 5993 6154 144203 161 chain 18231 chr11 135006516 + 4866713 4866959 L1MA1 4479 + 3903 4142 132256 44 1 0 5 3 0 126 1 0 29 2 0 35 chain 433929 chr11 135006516 + 4875330 4880487 L1P2 5180 + 2 5178 9216 137 16 15 93 1 0 260 1 0 8 1 0 272 1 0 6 1 0 133 1 26 353 3 2 703 0 1 1166 1 0 5 3 1 109 0 1 1061 0 4 347 0 1 381 1 0 50 1 0 37 1 0 4 chain 66615 chr11 135006516 + 4887680 4888610 L1PA11 4918 + 3537 4465 49822 299 5 0 7 17 22 183 2 1 6 0 2 271 5 0 67 1 0 12 2 0 29 7 12 17 chain 171182 chr11 135006516 + 4889473 4891464 L1PA5 6144 + 4157 6143 21915 289 0 1 506 0 1 822 4 0 354 3 0 13 chain 3912 chr11 135006516 + 4950406 4950448 L1PA3long 6157 - 2 44 208679 42 chain 265453 chr11 135006516 + 4954804 4957691 L1PA2 6032 - 2 2888 15420 844 1 0 2042 chain 11799 chr11 135006516 + 4971557 4971721 L1MA7 2200 + 1802 1962 153048 26 2 0 121 2 0 13 chain 52200 chr11 135006516 + 4985034 4985720 L1PA11 4918 - 433 1114 57499 13 2 0 78 2 1 62 2 0 28 2 3 334 1 0 162 chain 46724 chr11 135006516 + 5051783 5052356 LTR22 571 + 0 571 61436 78 1 0 204 4 3 286 chain 6616 chr11 135006516 + 5064259 5064389 Tigger1 2417 + 2191 2323 180333 21 37 39 72 chain 43628 chr11 135006516 + 5075802 5076351 L1PA8 5853 - 6 548 64654 78 10 9 17 1 0 55 2 1 8 1 0 69 2 0 48 1 0 257 chain 183108 chr11 135006516 + 5133559 5136110 L1PA10 4194 - 44 2737 20669 35 3 0 33 0 10 140 0 2 38 0 1 200 0 1 6 2 1 29 30 25 125 0 1 63 2 0 6 0 2 26 0 2 143 14 15 115 6 0 175 5 10 148 0 6 91 6 9 19 1 0 7 3 4 38 0 1 230 0 2 55 9 6 43 8 175 268 48 0 85 15 21 281 chain 14742 chr11 135006516 + 5143668 5143840 L1PA4 6152 + 5980 6152 142132 172 chain 4572 chr11 135006516 + 5147625 5147705 L1PA15 4387 - 907 968 199974 9 19 0 52 chain 4319 chr11 135006516 + 5164610 5164665 L1MC4 1079 - 784 839 202977 55 chain 109436 chr11 135006516 + 5165461 5166849 LTR12C 1709 + 0 1709 34334 325 23 0 11 0 43 87 4 0 5 0 3 176 0 278 182 1 0 6 4 2 106 0 4 13 1 0 57 4 24 83 0 4 43 0 1 168 5 4 84 chain 29407 chr11 135006516 + 5181526 5181937 LTR7 482 - 0 482 87032 49 12 14 127 0 31 12 1 0 24 0 1 109 8 46 69 chain 284965 chr11 135006516 + 5183197 5186933 HERVH-int 3825 - 0 3825 14353 89 9 1 135 0 2 149 39 39 21 59 269 802 0 1 847 1 0 13 0 2 13 0 2 9 9 0 202 15 0 127 0 2 257 1 4 57 8 7 75 64 0 12 63 0 32 1 0 25 3 0 16 21 0 7 11 63 70 3 4 471 chain 25706 chr11 135006516 + 5186935 5187347 LTR7 482 - 0 482 101262 190 0 31 36 0 1 39 51 0 21 20 107 5 0 2 50 chain 214463 chr11 135006516 + 5201299 5203708 L1PA5 6144 - 244 2654 18197 1157 0 1 1252 chain 139693 chr11 135006516 + 5203708 5205312 L1PA5 6144 + 1883 3492 26112 46 0 4 380 1 0 395 1 3 781 chain 3956 chr11 135006516 + 5215028 5215585 LTR12D 1347 - 260 877 208049 4 1 0 29 8 7 11 462 524 42 chain 3189 chr11 135006516 + 5215601 5215636 LTR12D 1347 - 811 846 221142 35 chain 41892 chr11 135006516 + 5215771 5216226 L1PA3long 6157 + 5702 6157 66770 455 chain 15579 chr11 135006516 + 5234091 5234278 L1PA5 6144 - 46 234 139640 5 0 1 182 chain 538505 chr11 135006516 + 5237237 5243355 L1PA4 6152 - 0 6149 3067 628 1 0 229 0 1 1514 0 25 451 0 1 4 3 4 118 1 0 12 1 0 90 0 1 995 0 4 465 0 1 6 1 0 836 5 6 758 chain 169445 chr11 135006516 + 5282528 5284605 L1PA7 6471 + 4382 6461 22123 35 1 3 161 0 3 139 5 0 66 4 0 397 7 11 207 0 1 94 0 2 119 7 6 510 1 2 13 0 1 62 1 0 107 2 1 139 chain 3734 chr11 135006516 + 5297601 5297641 L1PA7 6471 + 6267 6307 211399 40 chain 8782 chr11 135006516 + 5297642 5297735 L1PA7 6471 + 6309 6402 166754 93 chain 2175 chr11 135006516 + 5297736 5297763 L1PA7 6471 + 6439 6466 236865 27 chain 5770 chr11 135006516 + 5309453 5309542 LTR4 552 - 429 514 187437 42 1 0 4 1 0 7 4 2 30 chain 132696 chr11 135006516 + 5314489 5316184 LTR12C 1709 - 0 1709 27480 84 5 4 393 0 4 106 4 2 4 1 0 275 1 0 79 0 2 53 41 0 229 8 10 71 12 55 105 18 27 206 chain 2252 chr11 135006516 + 5315494 5315519 LTR12C 1709 - 847 872 119139 25 chain 4103 chr11 135006516 + 5319367 5319422 LTR1D 973 - 919 973 205896 11 2 1 42 chain 37440 chr11 135006516 + 5339364 5339804 L1PA5 6144 - 9 445 72905 134 12 8 294 chain 64689 chr11 135006516 + 5351018 5351738 L1PA4 6152 - 16 736 50700 720 chain 16017 chr11 135006516 + 5369881 5370088 MLT2A2 560 - 356 560 138313 67 8 4 65 0 1 67 chain 464116 chr11 135006516 + 5377134 5382375 L1PA4 6152 + 910 6146 8253 4 1 0 11 0 4 110 0 1 1108 0 1 414 15 0 608 1 0 994 0 1 1138 0 4 589 0 1 248 chain 541534 chr11 135006516 + 5394575 5400700 L1PA3long 6157 + 5 6157 2584 1244 1 0 857 0 3 29 0 1 74 0 19 465 1 0 561 0 4 30 1 0 869 1 0 6 0 1 472 0 1 1182 0 1 183 4 5 145 chain 106707 chr11 135006516 + 5417388 5418595 L1PA4 6152 + 4077 5301 35060 279 0 12 117 0 5 811 chain 76076 chr11 135006516 + 5418596 5419431 L1PA4 6152 + 5306 6140 45430 828 1 0 6 chain 61656 chr11 135006516 + 5425344 5426254 LTR12 884 + 0 862 52056 34 15 0 5 20 0 27 0 1 48 0 25 29 37 0 12 0 25 133 24 0 37 2 0 249 1 0 237 chain 545427 chr11 135006516 + 5433532 5439645 L1PA3long 6157 + 0 6157 2021 707 1 8 34 0 1 439 0 3 657 0 1 542 0 4 45 0 4 2448 0 1 413 1 5 259 0 12 147 0 2 36 0 5 384 chain 33101 chr11 135006516 + 5439699 5440118 L1PA7 6471 + 6050 6470 79052 81 1 2 337 chain 28721 chr11 135006516 + 5467146 5467488 L1PA5 6144 + 5795 6138 90239 199 5 6 138 chain 10283 chr11 135006516 + 5472009 5472125 L1PA8A 6298 - 166 282 159219 116 chain 3653 chr11 135006516 + 5472125 5472167 L1PA8 5853 + 5811 5853 212732 42 chain 72542 chr11 135006516 + 5485523 5486646 L1PA2 6032 - 6 814 47248 145 0 2 475 317 0 186 chain 66261 chr11 135006516 + 5486646 5487374 L1PA2 6032 + 4476 5209 49897 695 0 5 33 chain 114750 chr11 135006516 + 5498728 5500000 L1HS 6032 + 0 1273 32861 431 0 1 841 chain 436941 chr11 135006516 + 5500000 5504750 L1PA2 6032 + 1273 6032 9129 1299 0 5 1652 0 4 1799 chain 19194 chr11 135006516 + 5523003 5523234 L1PA6 6164 - 4 235 129542 145 1 0 18 0 1 67 chain 31173 chr11 135006516 + 5532659 5533101 LTR46 455 - 0 455 82216 44 1 16 93 2 1 81 33 32 188 chain 37476 chr11 135006516 + 5552182 5552658 LTR15 485 - 10 485 72846 18 0 1 16 7 0 43 2 1 112 1 5 128 0 2 149 chain 32342 chr11 135006516 + 5590514 5590916 L1P3 4156 + 0 400 80284 251 2 1 68 1 0 80 chain 25786 chr11 135006516 + 5600816 5601100 AluY 311 + 14 298 100928 284 chain 41916 chr11 135006516 + 5605521 5605994 L1PA5 6144 - 14 487 66736 473 chain 107914 chr11 135006516 + 5610926 5612246 LTR12C 1709 + 0 1709 34744 300 0 1 160 13 13 176 0 278 80 0 4 100 12 9 103 0 4 168 0 102 123 7 6 51 0 4 27 chain 111548 chr11 135006516 + 5677054 5678684 L1PA7 6471 + 5126 6454 33796 69 0 4 422 0 3 28 310 0 653 5 6 143 chain 6562 chr11 135006516 + 5679941 5680014 L1PA6 6164 - 459 532 177386 73 chain 32036 chr11 135006516 + 5680014 5680387 L1PA6 6164 + 5786 6160 80803 11 0 1 362 chain 50424 chr11 135006516 + 5696930 5697475 L1PA2 6032 - 0 545 58693 545 chain 121421 chr11 135006516 + 5697475 5698794 L1PA2 6032 + 4156 5479 30557 333 0 4 986 chain 38243 chr11 135006516 + 5702451 5703030 PABL_A 660 - 0 586 71781 26 0 1 67 2 8 102 3 0 56 3 4 81 2 0 21 43 0 21 0 45 29 5 7 118 chain 106845 chr11 135006516 + 5703994 5705411 LTR12C 1709 + 0 1709 35018 291 4 5 40 0 43 85 5 2 5 0 3 68 0 1 23 19 14 29 0 1 27 0 1 4 2 1 57 0 159 249 1 0 9 3 1 29 0 1 76 11 4 108 2 1 4 0 1 97 0 1 16 0 101 61 8 7 84 chain 28740 chr11 135006516 + 5708459 5708767 AluYb8 318 + 0 308 90171 308 chain 37458 chr11 135006516 + 5712364 5712823 LTR2 463 - 0 461 72880 88 12 13 201 0 1 158 chain 30296 chr11 135006516 + 5720472 5720790 AluYb8 318 + 0 318 83924 318 chain 19560 chr11 135006516 + 5725022 5725406 L1PA16 3655 + 2893 3276 128488 6 2 0 201 117 118 58 chain 40915 chr11 135006516 + 5735457 5735917 L1HS 6032 - 2811 3271 67895 460 chain 246925 chr11 135006516 + 5735917 5738813 L1HS 6032 + 3211 6026 16399 607 0 1 741 2 0 709 1 0 150 76 3 584 14 8 12 chain 30369 chr11 135006516 + 5743031 5743369 L1PA3long 6157 - 0 337 83743 149 1 0 188 chain 16636 chr11 135006516 + 5750124 5750321 L1PA5 6144 - 3 201 136567 143 3 4 51 chain 3944 chr11 135006516 + 5787738 5787825 L1MB7 1623 + 1060 1148 208207 26 28 29 33 chain 9172 chr11 135006516 + 5793778 5793933 L1MA2 4263 - 149 298 164694 10 2 1 31 24 17 48 0 2 40 chain 39167 chr11 135006516 + 5807506 5807937 L1PA5 6144 - 3 433 70514 110 1 0 320 chain 3465 chr11 135006516 + 5827957 5828004 HERVIP10FH-int 2884 - 1949 1995 215907 4 1 0 42 chain 8965 chr11 135006516 + 5830994 5831105 L1P1 4361 - 1383 1494 165791 111 chain 18542 chr11 135006516 + 5833197 5833413 L1PA8A 6298 + 6074 6290 131384 216 chain 118878 chr11 135006516 + 5846951 5848495 THE1B-int 1605 + 18 1599 31464 112 0 1 158 3 5 40 1 3 93 0 25 48 7 6 151 17 16 63 5 6 168 0 10 161 2 0 515 chain 20880 chr11 135006516 + 5848501 5848855 THE1B 368 + 0 368 124360 47 33 38 87 2 1 25 35 45 125 chain 51173 chr11 135006516 + 5850906 5851481 L1PA4 6152 + 5578 6152 58202 569 1 0 5 chain 36576 chr11 135006516 + 5856793 5857243 L1PA6 6164 - 3 468 74127 7 2 0 54 4 0 20 0 1 320 7 0 28 0 27 8 chain 15228 chr11 135006516 + 5857246 5857421 L1PA6 6164 + 5556 5731 140693 175 chain 32549 chr11 135006516 + 5863743 5864144 L1PA7 6471 - 30 431 79945 401 chain 21945 chr11 135006516 + 5868494 5868734 L1PA4 6152 - 9 249 120441 240 chain 27456 chr11 135006516 + 5869286 5869676 L1PA8 5853 + 5470 5853 94797 51 1 0 43 1 0 27 0 4 13 2 0 74 1 0 6 20 16 36 5 4 16 1 0 93 chain 200096 chr11 135006516 + 5888076 5890312 L1PA4 6152 - 1 2238 19202 112 0 1 2124 chain 60515 chr11 135006516 + 5897470 5898164 L1PA4 6152 + 5461 6152 52573 5 3 0 351 0 1 80 1 0 254 chain 30278 chr11 135006516 + 5907019 5907397 MLT2A1 477 + 0 377 84002 169 4 1 89 0 2 116 chain 3463 chr11 135006516 + 5913225 5913272 L1PA16 3655 - 70 114 215939 7 3 0 37 chain 20365 chr11 135006516 + 5917385 5917668 AluY 311 + 35 300 126012 43 9 1 44 13 3 174 chain 310233 chr11 135006516 + 5925846 5930210 L1PB1 5432 - 9 4359 12993 5 1 0 14 1 0 8 5 4 23 1 0 23 2 0 14 1 0 6 2 0 17 25 13 15 1 0 44 1 0 11 15 14 44 2 0 9 11 7 7 1 0 7 1 0 24 20 16 47 1 0 54 3 2 183 0 1 181 0 1 37 0 1 245 18 23 296 2 1 158 0 1 135 7 0 6 0 5 108 0 2 32 0 1 81 9 10 611 0 2 32 1 0 64 27 28 256 2 0 6 11 7 120 0 1 4 1 0 39 2 4 335 1 0 51 0 1 51 27 28 73 0 2 99 0 7 218 37 43 332 chain 12563 chr11 135006516 + 5933674 5933811 L1PA3long 6157 + 6020 6157 149997 137 chain 334391 chr11 135006516 + 5935723 5939678 L1HS 6032 + 12 3980 12043 116 14 0 13 0 13 102 1 0 277 1 10 35 9 10 743 0 1 252 0 3 990 1 6 478 1 0 771 3 0 148 chain 75264 chr11 135006516 + 5940096 5941049 L1P1 4361 + 19 1482 45806 18 3 5 48 0 525 213 17 0 654 chain 184196 chr11 135006516 + 5941049 5943086 L1PA4 6152 + 4112 6152 20572 129 1 0 397 0 5 1249 1 0 260 chain 53552 chr11 135006516 + 5946651 5947542 L1PA11 4918 + 3781 4629 56641 128 0 3 289 0 1 72 8 0 57 1 0 3 4 0 49 13 12 79 2 0 9 86 71 13 2 0 11 8 2 7 1 0 7 1 0 4 19 13 18 chain 38475 chr11 135006516 + 5949577 5950002 HERV-Fc1_LTR2 425 + 0 425 71484 425 chain 166402 chr11 135006516 + 5951081 5954967 HERV-Fc2-int 3928 + 174 3928 22471 710 74 68 67 78 0 480 146 137 645 356 356 146 469 469 237 244 205 234 chain 106919 chr11 135006516 + 5955264 5956465 SVA_F 1814 + 0 1812 34997 647 0 613 85 0 1 449 3 0 17 chain 225413 chr11 135006516 + 5956477 5959159 HERV-Fc1-int 4575 + 1935 4575 17562 119 31 0 473 0 1 334 44 0 42 0 1 243 44 65 188 1 3 795 0 5 43 1 5 50 1 0 273 chain 39195 chr11 135006516 + 5959159 5959584 HERV-Fc1_LTR2 425 + 0 425 70466 425 chain 129714 chr11 135006516 + 5981465 5982994 SVA_B 1603 + 0 1603 28149 20 5 0 12 7 9 553 4 0 200 2 0 30 0 82 70 1 0 83 2 1 97 0 3 443 chain 28030 chr11 135006516 + 5983756 5984058 AluYb8 318 - 7 309 92893 302 chain 60270 chr11 135006516 + 5996455 5997118 L1PA4 6152 - 17 680 52699 663 chain 58798 chr11 135006516 + 6021184 6021836 L1PA4 6152 + 5482 6134 53525 652 chain 5528 chr11 135006516 + 6038814 6038876 MSTA 426 - 356 418 189756 62 chain 39141 chr11 135006516 + 6058256 6058946 L1PA15 4387 + 3657 4327 70555 156 2 0 20 3 0 49 4 8 17 1 0 19 10 9 88 15 13 64 10 9 22 1 0 50 11 8 18 4 0 10 1 0 39 36 33 25 3 1 12 chain 40037 chr11 135006516 + 6091051 6091503 LTR7 482 - 0 482 69264 185 0 31 12 1 0 254 chain 292477 chr11 135006516 + 6092762 6096661 HERVH-int 3825 - 0 3825 13864 225 3 8 143 0 3 6 9 6 104 0 210 39 9 11 1354 4 31 205 0 1 4 1 0 252 15 0 444 1 0 51 1 0 7 32 11 52 4 3 24 86 0 12 1 0 15 133 0 24 1 0 10 1 0 39 68 0 308 0 11 212 chain 3228 chr11 135006516 + 6096097 6096135 HERVH-int 3825 - 3255 3293 220469 38 chain 41116 chr11 135006516 + 6096663 6097114 LTR7 482 - 0 482 67753 185 0 31 266 chain 9462 chr11 135006516 + 6099267 6099568 HERVK11-int 2540 + 678 943 163266 52 43 33 9 2 0 21 61 41 44 38 34 31 chain 41875 chr11 135006516 + 6102337 6102964 L1MA1 4479 + 3532 4162 66796 177 6 5 25 2 0 16 1 0 71 1 0 11 10 8 14 1 0 88 1 0 5 3 0 122 5 4 29 2 0 5 0 20 10 2 1 8 1 0 11 chain 61090 chr11 135006516 + 6107995 6108669 L1PA4 6152 - 0 674 52294 674 chain 40018 chr11 135006516 + 6108753 6109198 L1PA4 6152 + 4951 5392 69296 375 4 0 66 chain 187162 chr11 135006516 + 6111943 6114835 L1PREC2 3366 - 307 3149 20321 11 2 0 35 9 7 35 36 20 25 28 21 16 30 22 13 3 0 4 1 0 44 1 0 51 7 5 38 0 1 113 7 6 152 0 1 78 0 4 174 27 28 79 0 9 9 10 0 113 8 0 41 8 9 73 5 1 119 3 6 10 8 7 28 0 1 127 0 1 78 3 6 129 1 0 16 2 0 35 0 1 277 1 0 59 33 38 10 2 0 6 1 3 133 11 7 256 1 0 64 19 18 94 2 1 34 2 0 12 2 1 12 1 0 15 chain 240623 chr11 135006516 + 6137531 6140902 L1PA10 4194 + 183 3529 16736 18 3 0 6 2 0 9 23 34 21 2 0 15 78 49 21 1 0 5 6 5 8 1 0 6 1 0 15 7 0 8 2 1 80 2 0 273 14 9 49 4 1 7 0 3 100 7 6 267 9 11 190 44 48 185 0 1 230 9 5 90 0 2 54 0 4 113 0 1 85 5 12 388 5 6 79 0 3 26 0 2 226 1 0 176 1 0 222 2 1 170 chain 256350 chr11 135006516 + 6140963 6144132 L1PA2 6032 + 3181 6032 15914 637 0 1 765 320 0 593 1 2 687 5 0 7 8 13 146 chain 29292 chr11 135006516 + 6142377 6142685 AluYb8 318 + 0 308 87615 308 chain 27967 chr11 135006516 + 6157364 6157724 L1PA6 6164 + 5817 6162 93117 319 19 4 22 chain 522925 chr11 135006516 + 6164887 6170684 L1PA3long 6157 + 10 5947 4875 142 0 1 628 0 128 1019 0 1 1899 0 1 106 0 1 8 0 1 554 0 4 809 1 4 631 chain 44304 chr11 135006516 + 6181971 6182539 MER41A 554 - 0 554 63818 211 16 0 115 0 1 99 1 2 126 chain 30889 chr11 135006516 + 6182797 6183208 MER4A1 472 - 1 446 82704 67 0 13 127 17 39 192 1 0 7 chain 14477 chr11 135006516 + 6194187 6194341 L1HS 6032 + 5876 6030 142959 154 chain 6440 chr11 135006516 + 6195765 6195922 L1MA8 2339 - 0 141 181704 40 32 20 14 3 0 8 6 5 54 chain 108267 chr11 135006516 + 6200381 6201669 L1P1 4361 + 4 1314 34434 111 6 20 595 1 0 199 0 7 112 5 7 259 chain 133995 chr11 135006516 + 6201669 6203190 L1PA5 6144 + 4623 6142 27209 671 6 5 696 1 0 147 chain 555153 chr11 135006516 + 6206580 6212596 L1PA2 6032 + 4 6022 810 5130 2 0 48 0 4 836 chain 18402 chr11 135006516 + 6226085 6226338 Tigger3a 397 - 1 259 131783 20 9 10 183 0 4 41 chain 23284 chr11 135006516 + 6268006 6268288 AluY 311 + 9 297 114283 101 0 11 5 5 0 171 chain 16557 chr11 135006516 + 6269760 6269967 L1PB2 3958 + 3633 3836 136771 46 1 0 70 2 0 26 1 0 61 chain 12611 chr11 135006516 + 6286030 6286313 L1MC2 1988 - 0 281 149803 25 0 1 4 1 12 15 31 19 35 49 48 32 3 2 88 chain 33080 chr11 135006516 + 6299226 6299816 L1MA3 4352 + 3762 4352 79081 128 3 0 43 4 0 7 3 12 138 43 14 10 0 5 13 1 3 44 1 0 21 6 16 13 2 1 4 0 1 25 2 0 22 1 0 5 5 4 15 9 24 22 chain 38349 chr11 135006516 + 6302012 6302501 LTR6B 557 + 0 544 71651 20 0 27 25 0 15 155 1 15 36 0 2 64 0 1 41 3 0 81 1 0 11 1 0 7 0 1 43 chain 160340 chr11 135006516 + 6306833 6309422 MER41-int 2638 + 85 2634 23293 18 18 9 58 41 26 17 4 1 34 1 0 5 17 6 32 4 0 78 9 18 7 10 0 58 0 1 5 3 1 60 23 25 112 5 0 3 6 0 68 0 2 73 7 21 117 4 3 32 67 88 25 6 5 54 5 6 24 1 0 42 1 0 44 5 10 12 36 38 16 10 4 37 0 1 165 0 2 148 25 0 182 2 0 22 21 19 46 1 6 11 5 0 49 0 2 421 0 1 107 1 2 39 0 1 30 chain 45105 chr11 135006516 + 6309433 6309983 MER41A 554 + 0 548 62928 262 1 0 145 1 0 141 chain 42871 chr11 135006516 + 6331048 6331789 L1PB1 5432 - 12 677 65568 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 14 1 16 1 0 16 0 1 26 1 0 16 2 1 53 2 0 9 26 20 24 1 0 11 55 0 80 1 0 94 0 12 162 chain 36919 chr11 135006516 + 6367200 6367638 LTR2 463 + 0 460 73634 162 7 27 75 0 1 153 0 1 41 chain 3953 chr11 135006516 + 6382086 6382129 MER50 708 + 640 683 208093 43 chain 4454 chr11 135006516 + 6382702 6382759 MER5C 305 + 68 125 201298 57 chain 26095 chr11 135006516 + 6387257 6387661 LTR7 482 + 0 475 99643 68 30 18 15 15 14 17 0 51 41 5 37 44 0 1 169 chain 283463 chr11 135006516 + 6387671 6391273 HERVH-int 3825 + 0 3825 14437 157 2 1 85 0 5 85 2 1 30 15 16 95 13 15 40 1 0 15 3 212 22 1 0 260 0 4 37 12 13 126 1 0 4 7 0 146 0 1 62 11 1 24 0 3 10 1 0 102 5 0 434 0 4 82 4 9 279 37 38 663 0 1 9 0 1 162 0 1 153 37 38 84 0 1 189 0 10 95 chain 30287 chr11 135006516 + 6392479 6392883 LTR7 482 + 0 475 83969 69 8 46 109 5 37 44 0 1 169 chain 31810 chr11 135006516 + 6396319 6397057 MER57A1 433 - 0 433 81152 150 331 26 257 chain 24076 chr11 135006516 + 6396511 6396800 AluY 311 + 14 303 109891 6 1 0 112 0 1 170 chain 15591 chr11 135006516 + 6407015 6407294 LTR23 429 + 0 260 139610 94 46 19 5 1 0 10 15 24 108 chain 56898 chr11 135006516 + 6407301 6408731 MER4E1 777 - 7 777 54596 51 1 3 158 9 10 5 2 0 110 304 0 23 0 1 101 0 1 22 1 5 73 362 0 184 1 0 23 chain 8194 chr11 135006516 + 6409404 6409672 MER4C 627 + 275 613 169983 20 96 169 47 0 6 7 45 36 53 chain 29039 chr11 135006516 + 6429003 6429308 AluYb8 318 - 13 318 88813 305 chain 3900 chr11 135006516 + 6429374 6429421 L1MC5 759 + 545 592 208841 47 chain 52745 chr11 135006516 + 6607153 6609484 L1MA3 4352 + 3410 4279 57162 195 10 11 118 1 0 3 9 0 6 1 4 130 13 11 64 4 5 36 1439 15 60 74 51 6 0 1 109 7 0 24 2 0 20 chain 5677 chr11 135006516 + 6696678 6696742 L1PA4 6152 + 6076 6140 188325 64 chain 26308 chr11 135006516 + 6699966 6700253 L1PA2 6032 - 0 287 98797 287 chain 10436 chr11 135006516 + 6707926 6708052 LTR8 732 + 606 732 158542 126 chain 28716 chr11 135006516 + 6711880 6712187 SVA_D 2077 - 17 324 90271 307 chain 16915 chr11 135006516 + 6719544 6719759 Tigger3c 601 + 355 570 135812 215 chain 81854 chr11 135006516 + 6732612 6733667 LTR13 1007 + 0 1007 42819 66 54 0 192 0 5 118 4 5 242 2 1 68 0 1 309 chain 294527 chr11 135006516 + 6751104 6754361 L1PA4 6152 + 2888 6152 13730 553 0 3 1860 0 4 844 chain 128762 chr11 135006516 + 6781218 6782775 L1PA7 6471 - 5 1591 28375 32 0 1 122 2 3 20 1 5 76 0 5 55 0 9 522 0 2 364 0 4 113 0 3 250 chain 122186 chr11 135006516 + 6784284 6785732 L1PA6 6164 + 4709 6162 30314 1348 30 31 62 0 4 8 chain 25822 chr11 135006516 + 6800465 6800766 L1PA5 6144 - 0 301 100782 149 0 5 8 6 1 138 chain 11979 chr11 135006516 + 6810727 6810888 AluSq2 311 + 129 290 152293 16 3 0 6 2 5 134 chain 28762 chr11 135006516 + 6823077 6823473 LTR7 482 + 0 469 90053 69 8 46 109 8 9 31 0 31 10 0 3 161 chain 4810 chr11 135006516 + 6823522 6823577 MSTA-int 1630 - 1575 1630 197237 55 chain 37497 chr11 135006516 + 6823932 6824377 LTR10F 562 - 2 562 72812 329 1 116 115 chain 10088 chr11 135006516 + 6842485 6842670 Tigger3a 397 + 54 276 160144 22 15 64 87 1 0 25 16 0 13 0 5 6 chain 48048 chr11 135006516 + 6872157 6872681 L1PA3long 6157 - 1 525 60445 524 chain 20254 chr11 135006516 + 6872868 6873175 THE1D-int 1627 - 11 326 126368 24 0 3 151 14 22 52 1 2 22 16 12 27 chain 92735 chr11 135006516 + 6874207 6875480 PABL_A-int 1935 + 650 1913 38736 42 3 2 157 0 3 31 0 1 102 1 0 86 1 0 53 0 1 394 0 2 203 1 0 109 1 0 18 3 1 15 12 9 10 1 0 4 11 5 15 chain 47259 chr11 135006516 + 6875952 6876944 PABL_A 660 + 0 660 60995 68 3 16 5 0 1 38 16 0 27 10 21 82 341 0 16 2 1 19 0 1 255 0 1 4 1 0 105 chain 67124 chr11 135006516 + 6880226 6881118 THE1B-int 1605 - 659 1560 49607 246 28 39 188 29 1 15 0 25 367 1 2 18 chain 7953 chr11 135006516 + 6885150 6885309 MER30 238 + 59 238 171312 48 6 0 6 7 33 27 18 17 17 0 1 30 chain 126368 chr11 135006516 + 6899001 6900442 L1PA5 6144 + 4714 6137 28986 928 19 0 75 0 1 419 chain 76576 chr11 135006516 + 6908830 6909775 L1PA7 6471 - 20 952 45175 577 18 1 18 0 7 145 3 0 184 chain 28383 chr11 135006516 + 6909775 6910278 L1PA15 4387 + 3860 4351 91651 30 10 8 35 1 0 75 10 1 36 7 13 46 1 0 26 10 9 45 3 2 22 4 0 8 2 1 14 1 2 34 8 16 33 2 0 13 5 0 22 chain 549257 chr11 135006516 + 6925819 6931952 L1PA4 6152 + 0 6151 1544 71 1 2 2207 4 8 98 0 4 610 0 2 678 0 1 918 0 1 63 0 2 442 0 1 892 2 4 147 chain 552105 chr11 135006516 + 6969986 6976112 L1PA3long 6157 - 0 6153 1181 55 4 8 108 0 1 618 0 17 672 0 1 3851 1 2 467 0 3 350 chain 30414 chr11 135006516 + 6979809 6980328 MLT2A2 560 - 13 560 83658 132 25 16 53 6 38 22 0 3 34 79 81 168 chain 133747 chr11 135006516 + 6988051 6989687 L1PA7 6471 - 9 1671 27268 498 0 4 20 0 1 274 19 38 6 1 0 163 1 0 80 0 1 22 5 6 21 0 2 526 chain 206694 chr11 135006516 + 6994142 6996486 L1PA5 6144 - 3 2362 18741 142 0 10 694 4 8 71 1 0 4 0 1 70 1 0 693 0 3 571 1 0 92 chain 145785 chr11 135006516 + 7001844 7003452 L1PA3long 6157 - 2 1612 25207 851 1 2 257 0 1 499 chain 119514 chr11 135006516 + 7003452 7004784 L1P1 4361 + 2445 3777 31179 1332 chain 122236 chr11 135006516 + 7029704 7031511 L1PA15 4387 + 2557 4356 30299 153 0 2 350 13 17 15 8 12 16 1 0 4 0 1 41 5 0 98 0 5 87 9 8 63 0 1 114 0 1 239 30 28 50 0 4 25 3 1 14 0 1 26 9 8 42 0 1 29 2 1 37 10 8 38 8 7 27 1 0 5 0 3 44 1 0 18 11 6 8 1 0 50 12 9 42 24 16 24 chain 7644 chr11 135006516 + 7042867 7042973 L1PA5 6144 - 1 102 173261 47 6 1 53 chain 14044 chr11 135006516 + 7048039 7048202 L1PA3long 6157 + 5994 6157 144409 163 chain 154425 chr11 135006516 + 7086944 7088810 L1PA7 6471 - 3 1881 24053 147 0 1 89 9 10 4 1 0 600 0 3 21 0 5 12 0 7 24 1 3 243 1 0 4 15 6 613 0 4 82 chain 22810 chr11 135006516 + 7098771 7099115 THE1B 368 - 0 368 116531 125 35 45 26 1 0 107 6 21 44 chain 36794 chr11 135006516 + 7101986 7102491 LTR19A 502 - 1 502 73806 188 2 1 70 24 23 154 2 0 65 chain 3580 chr11 135006516 + 7107397 7107436 L1MB2 1706 - 590 629 213974 39 chain 230845 chr11 135006516 + 7127166 7131259 L1PB2 3958 - 146 3455 17263 37 2 1 21 2 0 7 11 0 64 2 1 49 8 4 11 1 0 67 0 5 93 4 0 13 2 0 54 8 9 13 1 0 56 2 0 107 0 1 23 9 10 19 4 5 176 11 10 16 17 16 57 465 0 46 10 15 38 13 14 162 4 0 14 8 12 83 4 0 448 0 1 5 1 0 447 1 0 129 0 30 74 0 2 36 14 9 20 54 31 96 1 2 28 0 1 40 12 8 173 309 0 192 0 9 199 chain 18971 chr11 135006516 + 7128143 7128359 L1PA5 6144 - 2 218 130180 216 chain 162956 chr11 135006516 + 7149118 7150974 L1PA5 6144 - 5 1840 22945 150 7 8 1217 22 0 460 chain 48266 chr11 135006516 + 7157904 7158542 L1PA8A 6298 - 7 614 60268 239 0 1 49 0 1 111 45 12 194 chain 54429 chr11 135006516 + 7158542 7159246 L1PA8A 6298 + 4974 5677 56079 514 19 24 27 2 0 31 7 3 104 chain 72590 chr11 135006516 + 7168721 7169647 L1P2 5180 - 2533 3435 47067 43 1 0 171 0 3 103 0 1 81 26 0 376 1 0 124 chain 181482 chr11 135006516 + 7169647 7171814 L1PA7 6471 + 4217 6403 20847 289 0 2 188 6 5 129 1 0 96 0 10 79 1 0 4 0 1 216 0 1 116 0 1 260 0 3 647 0 2 130 0 2 5 chain 19789 chr11 135006516 + 7190440 7190710 L1PA8 5853 - 0 267 127850 49 0 1 43 1 0 19 2 1 61 1 0 51 0 1 19 2 0 22 chain 40871 chr11 135006516 + 7193017 7193548 L1PA16 3655 - 67 596 68061 10 3 0 114 0 1 173 5 3 78 0 2 6 1 0 5 0 1 136 chain 21639 chr11 135006516 + 7195535 7195789 L1PA7 6471 + 5873 6127 121618 254 chain 28372 chr11 135006516 + 7195795 7196122 L1PA7 6471 + 6142 6470 91688 142 0 1 185 chain 55637 chr11 135006516 + 7198517 7199118 L1PA3long 6157 - 3315 3916 55343 601 chain 302310 chr11 135006516 + 7199118 7202421 L1PA3long 6157 + 2845 6157 13305 959 0 1 1581 0 2 479 0 1 185 0 5 99 chain 103331 chr11 135006516 + 7203542 7205481 L1M1 2793 + 493 2335 35913 6 1 0 10 1 0 13 3 0 12 3 2 4 1 0 14 2 0 8 3 0 8 1 0 9 1 0 11 3 0 7 151 69 33 43 30 11 2 0 4 2 0 21 0 15 22 1 0 26 28 25 23 32 29 96 5 4 30 36 14 131 1 0 33 0 6 29 4 0 11 1 0 9 17 15 78 0 4 28 0 3 260 4 22 45 0 1 120 9 8 249 1 4 24 1 6 69 0 2 31 46 47 51 chain 4373 chr11 135006516 + 7207244 7207297 Charlie1b 519 - 41 95 202288 29 0 1 24 chain 50752 chr11 135006516 + 7214709 7215371 L1PA8 5853 + 5189 5853 58462 375 1 0 44 2 0 31 0 9 30 2 1 14 5 4 45 1 0 14 7 6 91 chain 8530 chr11 135006516 + 7248818 7248915 AluYf4 310 + 213 310 168133 97 chain 74107 chr11 135006516 + 7254603 7255399 L1HS 6032 - 0 803 46457 141 0 7 655 chain 3633 chr11 135006516 + 7255399 7255439 L1P1 4361 + 1940 1980 208756 40 chain 85391 chr11 135006516 + 7268356 7269825 L1PB1 5432 - 12 1219 41383 16 1 0 14 1 0 20 1 0 24 28 23 26 13 1 16 1 0 59 2 1 50 3 1 11 4 0 11 1 0 13 1 0 20 1 0 11 228 0 378 0 1 17 0 2 84 8 5 70 1 0 34 6 8 39 10 6 246 chain 38241 chr11 135006516 + 7269825 7270273 L1PB1 5432 + 3728 4176 71786 448 chain 22855 chr11 135006516 + 7295012 7295297 L1PA8 5853 + 5574 5853 116308 34 2 0 71 1 0 9 1 0 52 2 1 19 2 1 92 chain 109780 chr11 135006516 + 7306776 7308278 THE1C-int 1605 - 6 1605 34262 112 0 1 86 0 1 140 6 10 42 0 1 310 25 50 143 12 11 240 30 37 80 0 6 165 0 54 95 3 2 13 chain 29129 chr11 135006516 + 7308283 7308652 THE1C 375 - 5 375 88412 164 0 3 190 2 0 13 chain 131847 chr11 135006516 + 7346358 7347784 L1PA2 6032 - 1519 2944 27612 4 1 0 1421 chain 141561 chr11 135006516 + 7347784 7349303 L1PA2 6032 + 4500 6019 25891 1519 chain 120477 chr11 135006516 + 7363389 7364961 THE1B-int 1605 - 0 1605 30879 15 1 0 318 8 5 322 3 4 265 1 2 207 10 35 121 4 5 104 0 1 4 1 0 8 0 5 49 0 1 25 0 1 91 0 2 15 chain 162777 chr11 135006516 + 7380091 7381879 L1PA3long 6157 - 8 1796 22968 1788 chain 9824 chr11 135006516 + 7391198 7391442 L1PB1 5432 - 54 275 161479 8 1 0 23 63 47 4 1 0 14 2 1 44 1 0 15 7 6 46 3 1 12 chain 159028 chr11 135006516 + 7395164 7397062 L1PA7 6471 - 10 1917 23457 152 1 2 236 0 1 12 0 1 436 1 0 241 0 2 270 0 2 156 0 1 273 0 2 95 0 1 4 1 0 20 chain 97687 chr11 135006516 + 7407419 7408541 L1PA4 6152 + 5031 6143 37373 963 5 0 8 5 0 141 chain 28305 chr11 135006516 + 7411223 7411573 L1PA6 6164 - 5 366 91921 260 9 20 81 chain 51116 chr11 135006516 + 7415206 7415775 L1PA4 6152 - 13 582 58240 569 chain 30558 chr11 135006516 + 7428592 7428910 AluYb9 318 - 0 318 83329 318 chain 23385 chr11 135006516 + 7474038 7474312 AluSp 311 - 37 311 113736 274 chain 25400 chr11 135006516 + 7486031 7486325 AluY 311 + 0 290 102683 126 5 0 134 0 1 29 chain 28531 chr11 135006516 + 7486907 7487264 THE1A 353 - 0 353 91044 242 1 0 26 5 3 7 1 0 75 chain 8102 chr11 135006516 + 7498475 7498576 MLT1A 405 + 281 382 170477 101 chain 13643 chr11 135006516 + 7529274 7529467 Tigger2a 444 - 185 379 145809 22 0 1 98 3 0 30 5 8 35 chain 33684 chr11 135006516 + 7537729 7538137 MER48 407 - 0 407 78120 233 1 0 174 chain 149169 chr11 135006516 + 7538540 7540845 HERVH48-int 3304 - 938 3108 24733 21 6 5 46 1 0 12 1 0 8 0 1 60 3 1 18 1 0 86 14 11 144 17 40 137 1 0 117 2 1 88 1 0 221 1 0 6 1 0 11 1 0 122 17 10 5 2 0 19 1 0 24 2 0 20 1 0 15 1 0 6 2 0 18 10 5 32 2 0 13 1 0 22 1 0 10 7 4 86 1 0 28 25 17 69 1 0 42 1 0 30 2 0 44 51 44 18 1 0 3 8 0 24 45 0 42 3 1 9 1 0 80 12 6 10 6 0 13 1 0 64 20 15 70 11 6 9 1 0 8 27 13 35 1 0 25 chain 3927 chr11 135006516 + 7569343 7569391 MIRb 242 - 104 173 208456 40 0 21 8 chain 549104 chr11 135006516 + 7679379 7685402 L1PA2 6032 - 3 6030 1566 849 0 4 121 1 0 367 3 0 918 0 2 1294 1 0 11 0 2 2388 0 1 70 chain 8730 chr11 135006516 + 7700416 7700530 MER21B 843 + 2 114 167027 85 2 0 27 chain 3681 chr11 135006516 + 7721504 7721547 tRNA-Gln-CAG 43 + 0 43 212220 43 chain 48006 chr11 135006516 + 7731999 7732536 L1PA3long 6157 + 5620 6157 60485 284 1 0 82 4 5 166 chain 98480 chr11 135006516 + 7740708 7741781 L1PA3long 6157 - 1 1075 37165 16 0 1 1057 chain 67058 chr11 135006516 + 7741781 7742524 L1PA3long 6157 + 4292 5035 49630 119 0 1 185 1 0 438 chain 551012 chr11 135006516 + 7756046 7762029 L1PA2 6032 + 0 6031 1310 466 0 44 1215 0 5 1029 4 0 1573 0 3 1696 chain 41602 chr11 135006516 + 7771577 7772081 MLT2A2 560 + 0 505 67152 203 0 1 301 chain 51675 chr11 135006516 + 7772081 7772681 L1P1 4361 + 3712 4328 57841 129 0 17 17 0 1 274 1 0 155 1 0 23 chain 42208 chr11 135006516 + 7774564 7775130 L1PA8 5853 + 5304 5853 66388 208 5 3 49 2 1 43 2 0 71 1 0 14 10 1 50 1 0 16 1 0 93 chain 25728 chr11 135006516 + 7776790 7777233 Tigger3b 1229 + 180 694 101182 51 0 1 28 42 74 38 3 26 95 4 6 18 0 2 17 0 1 19 0 11 12 1 2 54 15 13 46 chain 444925 chr11 135006516 + 7785907 7791235 L1PA3long 6157 + 255 6156 8907 310 9 10 122 0 7 119 65 17 250 0 1 157 5 6 192 6 4 2904 0 4 164 0 611 51 1 0 968 1 0 4 chain 138441 chr11 135006516 + 7791268 7792911 L1PA5 6144 + 4501 6141 26406 127 1 0 131 11 12 160 0 1 339 34 30 681 5 0 6 4 9 144 chain 243971 chr11 135006516 + 7809973 7812750 L1PA5 6144 + 3366 6144 16566 325 2 0 2124 0 3 233 0 1 30 0 1 49 3 1 11 chain 72125 chr11 135006516 + 7831533 7832655 MER11A 1151 - 8 1145 47423 155 6 7 51 0 2 7 0 1 37 18 0 20 7 14 13 75 1 145 5 7 139 0 7 9 7 1 80 14 15 6 1 0 98 0 2 32 4 0 59 0 93 32 0 2 102 chain 227621 chr11 135006516 + 7832732 7835278 L1HS 6032 - 2041 4588 17443 72 0 1 2474 chain 169293 chr11 135006516 + 7835278 7837286 L1PA6 6164 + 4136 6161 22064 513 1 0 232 5 4 217 0 8 205 0 2 489 0 1 196 12 20 138 chain 92353 chr11 135006516 + 7841837 7843241 L1PA7 6471 - 13 1114 38859 652 311 0 60 0 1 124 0 7 257 chain 26539 chr11 135006516 + 7864579 7864888 L1PA6 6164 + 4996 5312 97887 263 0 7 46 chain 33008 chr11 135006516 + 7864888 7865267 L1PA6 6164 + 5316 5698 79201 218 1 4 160 chain 39221 chr11 135006516 + 7865267 7865722 L1PA6 6164 + 5706 6162 70427 125 0 1 330 chain 13566 chr11 135006516 + 7865784 7865955 L1PA16 3655 + 3417 3585 146105 162 3 0 6 chain 22950 chr11 135006516 + 7881219 7881521 L1PA8 5853 - 447 750 115859 118 5 4 109 8 9 44 0 1 18 chain 26852 chr11 135006516 + 7881521 7881860 L1PA8 5853 + 5519 5853 96802 45 1 0 44 2 0 71 1 0 15 0 1 45 2 1 19 1 0 93 chain 548551 chr11 135006516 + 7882581 7888617 L1PA2 6032 + 0 6032 1636 72 0 1 184 2 1 120 0 2 335 1 0 3828 1 0 269 4 0 1220 chain 4833 chr11 135006516 + 7905290 7905464 MER52C 1267 - 209 326 196993 34 22 23 11 75 17 32 chain 36233 chr11 135006516 + 7920664 7928151 LTR10C 591 - 0 587 74582 82 6 8 123 6904 0 79 0 4 261 2 0 30 chain 40047 chr11 135006516 + 7933697 7934148 LTR7 482 - 0 482 69251 205 1 32 245 chain 293860 chr11 135006516 + 7935404 7939012 HERVH-int 3825 - 0 3825 13775 437 0 4 46 8 218 693 0 1 350 0 1 97 0 1 38 0 1 222 8 35 458 15 0 444 1 0 49 2 1 11 0 20 41 43 0 19 21 0 7 3 0 12 1 0 17 28 0 22 1 0 10 1 0 25 0 56 266 0 11 212 chain 38160 chr11 135006516 + 7939014 7939454 LTR7 482 - 0 482 71897 81 0 1 104 0 31 44 0 10 211 chain 324341 chr11 135006516 + 7941811 7945387 L1PA2 6032 - 1 3584 12425 1344 0 8 500 1 0 1731 chain 13346 chr11 135006516 + 7955975 7956147 L1P3 4156 - 21 190 146603 20 2 1 9 3 1 138 chain 85344 chr11 135006516 + 7956147 7957177 L1PA5 6144 + 5092 6143 41400 405 0 11 70 0 8 143 0 4 402 2 0 8 chain 7908 chr11 135006516 + 7958917 7959042 MER4C 627 - 503 627 171592 45 10 8 22 1 2 47 chain 3084 chr11 135006516 + 7975365 7975398 L1MB2 1706 + 1651 1684 223240 33 chain 27866 chr11 135006516 + 7983775 7984082 AluYg6 310 - 5 310 93472 179 2 0 126 chain 41555 chr11 135006516 + 7990004 7990614 MER4A1_ 611 - 0 607 67216 66 0 1 288 10 11 58 7 11 54 13 1 39 22 25 53 chain 45254 chr11 135006516 + 7995574 7996087 L1PA4 6152 + 5640 6151 62763 258 1 0 110 1 0 143 chain 7769 chr11 135006516 + 8002157 8002271 Tigger3c 601 - 64 180 172490 20 10 12 84 chain 21582 chr11 135006516 + 8023449 8023703 AluSp 311 + 38 291 121838 94 1 0 159 chain 11479 chr11 135006516 + 8068359 8068546 MER30 238 - 0 201 154380 48 3 0 45 30 47 61 chain 53613 chr11 135006516 + 8078840 8079504 PABL_A 660 - 0 660 56607 24 1 2 293 2 1 11 3 0 58 1 0 271 chain 123918 chr11 135006516 + 8140805 8142231 L1PA6 6164 + 4717 6162 29725 575 0 4 51 1 0 66 0 3 501 0 13 232 chain 151070 chr11 135006516 + 8155549 8157267 L1PA5 6144 - 5 1737 24465 838 0 4 180 0 1 43 9 18 648 chain 47493 chr11 135006516 + 8160094 8160673 LTR10C 591 + 0 591 60844 34 2 0 22 0 4 86 1 9 355 0 2 79 chain 403493 chr11 135006516 + 8162360 8166736 L1PA2 6032 + 1646 6028 9985 436 0 2 164 0 1 41 0 1 371 0 2 3364 chain 28058 chr11 135006516 + 8172852 8173146 AluYg6 310 + 0 294 92797 294 chain 4156 chr11 135006516 + 8191934 8192009 MER33 330 - 5 88 205148 12 11 19 52 chain 15539 chr11 135006516 + 8232108 8232300 L1PA8A 6298 - 7 199 139772 192 chain 26218 chr11 135006516 + 8259940 8260242 AluY 311 + 4 307 99129 128 0 1 174 chain 3380 chr11 135006516 + 8271042 8271079 L1PA16 3655 + 3541 3578 217489 37 chain 12547 chr11 135006516 + 8326068 8326200 AluYb8 318 + 178 310 150053 132 chain 7775 chr11 135006516 + 8357238 8357359 MER33 330 - 100 203 172448 36 18 0 67 chain 26921 chr11 135006516 + 8369767 8370150 THE1C 375 - 0 375 96551 25 1 0 152 15 8 7 0 4 22 1 0 37 3 0 120 chain 3327 chr11 135006516 + 8396732 8396786 Charlie20a 515 + 299 361 218455 35 6 14 13 chain 16472 chr11 135006516 + 8397203 8397492 THE1D 372 + 93 372 137002 42 0 4 25 34 36 24 1 0 97 31 16 35 chain 23332 chr11 135006516 + 8399799 8400071 AluSp 311 + 16 288 114013 272 chain 13601 chr11 135006516 + 8400094 8400260 THE1C 375 - 209 375 145975 166 chain 85112 chr11 135006516 + 8400274 8402546 L1PB3 3668 + 2280 3555 41476 56 1 0 37 10 11 283 1 0 42 1 0 101 0 1 177 6 4 13 3 0 18 7 8 51 0 2 69 980 17 19 6 18 83 2 1 26 8 17 57 1 0 87 50 4 13 1 0 8 1 0 25 3 1 26 chain 541239 chr11 135006516 + 8418043 8424170 L1PA4 6152 + 6 6152 2631 119 2 16 1016 0 1 1162 6 1 844 1 0 1232 0 2 617 1 0 284 0 5 512 0 1 318 0 3 13 chain 5533 chr11 135006516 + 8437660 8437726 Tigger6a 1079 + 364 430 189732 66 chain 137790 chr11 135006516 + 8445545 8447083 L1PA4 6152 - 9 1551 26519 835 0 4 703 chain 42804 chr11 135006516 + 8447340 8448064 LTR1 825 - 0 780 65651 41 4 3 52 48 49 143 2 0 81 0 3 12 3 0 63 1 0 34 64 123 100 0 8 8 9 1 59 chain 9961 chr11 135006516 + 8451944 8452114 MER30 238 - 0 181 160773 84 15 42 9 16 0 46 chain 64741 chr11 135006516 + 8467252 8468034 L1P3 4156 - 17 802 50681 24 2 1 7 2 0 182 0 2 349 3 5 153 0 2 60 chain 72699 chr11 135006516 + 8468743 8469549 L1PA4 6152 + 3548 4354 47170 806 chain 159003 chr11 135006516 + 8469549 8471328 L1PA4 6152 + 4358 6143 23464 139 0 1 802 0 1 555 0 1 142 1 4 140 chain 64456 chr11 135006516 + 8471343 8472113 L1PA7 6471 + 5704 6470 50820 94 1 0 152 0 1 10 4 0 509 chain 121301 chr11 135006516 + 8487708 8489212 THE1B-int 1605 - 8 1554 30601 105 0 13 820 0 4 199 1 26 379 chain 516080 chr11 135006516 + 8511495 8517650 L1PA6 6164 + 0 6160 5567 187 0 1 272 6 5 237 0 1 19 7 6 43 0 3 14 1 18 10 17 0 203 1 0 707 1 0 168 0 1 430 1 0 864 0 1 113 1 2 1065 0 4 215 1 0 166 0 1 559 1 0 75 10 8 7 0 1 754 chain 153505 chr11 135006516 + 8519819 8521626 L1PA7 6471 + 4642 6466 24157 146 0 1 81 2 3 82 2 6 100 0 1 135 0 1 404 0 4 8 0 4 82 1 4 386 0 1 368 3 0 7 chain 77148 chr11 135006516 + 8523766 8524885 L1PA15 4387 + 3252 4366 44884 73 1 3 76 0 4 149 0 1 145 6 1 11 1 0 8 0 4 86 0 2 14 4 0 36 0 4 22 3 1 41 1 0 170 5 4 12 0 11 55 1 0 19 4 0 13 15 11 38 7 4 44 3 1 14 5 0 37 chain 151154 chr11 135006516 + 8531428 8533451 L1PB2 3958 - 120 2158 24454 62 2 1 94 1 0 64 1 0 70 3 2 34 0 3 57 3 0 13 3 1 63 5 0 7 12 11 39 11 9 50 0 1 5 8 7 283 1 0 38 1 0 106 0 13 89 0 1 232 1 0 40 13 17 94 0 9 406 0 4 41 0 1 71 chain 497376 chr11 135006516 + 8537926 8544008 L1PA6 6164 + 0 5992 6988 143 6 18 32 0 1 89 7 6 220 2 1 23 1 2 404 0 25 604 1 0 474 1 0 171 0 2 236 0 1 2140 136 2 161 1 4 499 0 2 55 2 0 216 7 8 167 0 1 124 0 1 160 chain 126307 chr11 135006516 + 8544340 8545876 SVA_B 1603 + 7 1600 29006 14 4 20 155 1 0 403 0 77 198 62 23 8 0 1 41 0 1 226 0 2 424 chain 2092 chr11 135006516 + 8545139 8545177 SVA_B 1603 + 778 816 177534 38 chain 20307 chr11 135006516 + 8565563 8565792 L1PA7 6471 - 5 234 126215 229 chain 33323 chr11 135006516 + 8569348 8569719 L1PA5 6144 + 5773 6144 78699 371 chain 9648 chr11 135006516 + 8570519 8570641 L1MA4 2864 + 872 994 162359 122 chain 33272 chr11 135006516 + 8571991 8572485 THE1B-int 1605 - 1083 1605 78767 66 1 26 36 3 6 97 3 4 123 16 12 29 0 1 86 15 17 19 chain 29338 chr11 135006516 + 8573953 8574401 Tigger3b 1229 - 483 930 87361 5 0 1 35 1 0 25 0 1 26 8 9 61 19 13 189 0 1 49 13 12 5 0 3 12 chain 39026 chr11 135006516 + 8601321 8601879 L1MA2 4263 + 3573 4114 70703 11 8 3 75 1 0 33 0 1 98 14 11 5 0 1 145 11 9 93 7 0 47 1 0 9 chain 15050 chr11 135006516 + 8613223 8613393 L1PA4 6152 + 5832 6002 141174 170 chain 13308 chr11 135006516 + 8613394 8613543 L1PA4 6152 + 6002 6151 147054 149 chain 30870 chr11 135006516 + 8643447 8643867 MLT2A1 477 + 0 415 82734 138 0 1 30 1 5 50 7 8 92 1 0 83 10 0 8 chain 26000 chr11 135006516 + 8663196 8663609 MSTA 426 + 0 426 100014 143 36 42 21 10 7 7 0 3 20 15 22 161 chain 9227 chr11 135006516 + 8682021 8682169 MER58A 224 + 42 192 164416 22 9 18 33 7 0 77 chain 12623 chr11 135006516 + 8684847 8685045 MER44A 345 - 0 212 149760 7 1 0 10 20 31 49 0 1 58 0 3 53 chain 22572 chr11 135006516 + 8697301 8697568 AluSc5 308 - 24 300 117709 9 0 2 236 0 7 22 chain 10259 chr11 135006516 + 8716656 8716803 MER2 342 + 174 322 159325 121 11 12 15 chain 24570 chr11 135006516 + 8733131 8733430 AluSp 311 + 0 294 107139 25 1 0 257 4 0 12 chain 3650 chr11 135006516 + 8733737 8733793 L1MB8 1703 + 1602 1649 212790 25 9 0 22 chain 4016 chr11 135006516 + 8739123 8739166 5S 121 - 78 121 207129 43 chain 8272 chr11 135006516 + 8753124 8753222 FLAM_C 140 + 10 108 169555 98 chain 56159 chr11 135006516 + 8772493 8773265 LTR12C 1709 + 819 1709 55035 18 1 0 237 0 47 85 24 0 9 20 13 117 0 2 93 0 1 18 1 102 57 8 7 84 chain 120445 chr11 135006516 + 8881721 8883534 L1PB3 3668 + 1834 3620 30890 121 11 3 30 0 4 105 7 9 6 5 0 305 20 26 23 0 1 8 1 0 62 0 1 61 0 1 67 1 0 160 7 6 61 0 5 91 2 0 15 3 4 76 2 1 59 3 1 145 1 0 65 2 5 29 2 1 72 33 19 18 2 0 3 1 0 25 3 1 34 10 6 12 2 1 13 7 4 15 1 0 6 chain 8130 chr11 135006516 + 8898969 8899065 HY3 101 - 5 101 170330 96 chain 547368 chr11 135006516 + 8910814 8916948 L1PA5 6144 + 3 6138 1783 201 0 1 910 0 1 759 0 1 1169 6 1 1271 0 1 1677 0 2 141 chain 22462 chr11 135006516 + 8918138 8918428 MER47A 366 + 43 335 118191 224 5 7 61 chain 27348 chr11 135006516 + 8933463 8933767 AluSp 311 + 1 304 95120 273 1 0 30 chain 23755 chr11 135006516 + 8973024 8973319 AluY 311 + 8 297 111740 111 7 0 7 1 2 169 chain 34483 chr11 135006516 + 8976812 8977312 MER1A 529 - 6 495 76937 29 5 0 20 19 18 200 6 0 147 0 1 11 17 17 46 chain 77959 chr11 135006516 + 8998881 8999783 SVA_D 2077 + 6 898 44543 4 1 0 6 1 0 6 1 0 6 1 0 7 0 10 9 11 0 154 6 1 689 chain 17125 chr11 135006516 + 8999814 9000000 SVA_F 1814 + 1017 1252 135244 148 0 49 38 chain 93511 chr11 135006516 + 9000009 9001068 SVA_E 1901 + 685 1883 38507 11 0 116 5 1 0 110 4 0 125 0 1 4 19 45 119 0 1 661 chain 25144 chr11 135006516 + 9006396 9006697 AluSp 311 - 15 311 104037 10 5 0 286 chain 137118 chr11 135006516 + 9030946 9032558 L1PA7 6471 - 3 1623 26615 10 0 2 386 0 1 365 0 1 79 0 3 673 0 1 99 chain 6227 chr11 135006516 + 9032562 9032629 L1PA7 6471 + 4759 4826 183343 67 chain 24721 chr11 135006516 + 9067548 9067842 AluSc5 308 - 6 296 106324 45 1 0 131 1 0 8 2 0 106 chain 24303 chr11 135006516 + 9076273 9076555 AluSp 311 - 3 286 108643 129 0 1 153 chain 53513 chr11 135006516 + 9118857 9119595 LTR17 781 + 0 757 56671 56 1 0 99 1 0 24 1 0 63 13 13 72 1 0 193 21 20 23 4 5 138 1 23 11 0 1 16 chain 15750 chr11 135006516 + 9130812 9131136 THE1D 372 + 0 338 139112 15 12 15 26 26 22 88 65 80 92 chain 9394 chr11 135006516 + 9135145 9135260 Tigger1 2417 - 0 115 163592 115 chain 4656 chr11 135006516 + 9140752 9140811 MER5A 189 + 7 67 199002 20 0 1 39 chain 79107 chr11 135006516 + 9148780 9149948 L1PB1 5432 + 4168 5413 43996 47 0 4 256 0 4 44 0 4 99 3 0 88 3 2 87 3 12 108 12 44 136 13 11 21 1 0 12 1 0 9 6 2 11 6 4 47 2 1 16 9 8 35 1 0 15 3 0 9 5 52 14 1 0 21 1 0 13 1 0 9 chain 3846 chr11 135006516 + 9161801 9161846 MIR 256 - 94 139 209688 45 chain 26027 chr11 135006516 + 9183777 9184085 AluSp 311 - 4 311 99905 111 2 1 195 chain 28749 chr11 135006516 + 9189684 9190054 THE1B 368 + 0 368 90128 176 1 0 43 1 0 18 1 0 62 0 2 35 1 0 32 chain 25275 chr11 135006516 + 9201047 9201337 AluSp 311 - 13 303 103344 290 chain 11599 chr11 135006516 + 9207080 9207215 L1PA7 6471 + 6317 6451 153891 35 1 0 99 chain 23745 chr11 135006516 + 9209590 9209935 THE1B 368 + 1 368 111806 45 0 15 111 1 0 50 7 8 57 2 1 18 5 13 49 chain 26660 chr11 135006516 + 9211493 9211857 THE1B-int 1605 + 1227 1599 97456 110 5 6 5 1 0 100 10 12 59 0 5 23 0 1 51 chain 27077 chr11 135006516 + 9211862 9212216 THE1B 368 + 0 368 96015 39 1 16 112 6 5 196 chain 43069 chr11 135006516 + 9256051 9256555 MER9a3 513 + 0 505 65338 110 1 2 393 chain 24012 chr11 135006516 + 9265926 9266205 AluSp 311 - 22 301 110259 279 chain 25804 chr11 135006516 + 9275426 9275726 AluSp 311 + 4 305 100850 127 0 1 173 chain 9962 chr11 135006516 + 9278118 9278256 L1MB8 1703 + 1443 1584 160764 76 2 0 5 1 6 54 chain 32167 chr11 135006516 + 9279673 9280108 L1PA7 6471 - 7 437 80588 5 2 0 61 10 5 85 2 1 197 2 0 6 0 2 6 0 2 52 0 1 7 chain 30163 chr11 135006516 + 9285107 9285422 AluYb8 318 + 0 315 84298 315 chain 12468 chr11 135006516 + 9294262 9294482 MLT2B1 522 - 293 522 150385 87 48 57 85 chain 25909 chr11 135006516 + 9299922 9300219 AluSp 311 + 0 298 100379 91 0 3 25 2 0 179 chain 24236 chr11 135006516 + 9305334 9305617 AluSp 311 - 15 298 109018 283 chain 80582 chr11 135006516 + 9340322 9341251 LTR5_Hs 974 - 0 974 43352 194 0 19 222 0 1 229 1 22 275 0 4 8 chain 14902 chr11 135006516 + 9347008 9347234 L1PREC2 3366 + 2491 2697 141624 21 4 0 91 6 0 46 0 1 11 11 0 36 chain 25436 chr11 135006516 + 9367664 9367961 AluSp 311 - 14 311 102519 297 chain 27018 chr11 135006516 + 9369352 9369673 LTR17 781 - 457 777 96221 163 1 0 157 chain 45825 chr11 135006516 + 9379048 9379948 LTR10C 591 + 10 591 62204 50 0 4 78 332 0 94 0 8 86 1 0 180 0 2 79 chain 25324 chr11 135006516 + 9386540 9387570 MER4A1 472 + 1 472 103104 13 0 2 115 2 1 21 627 15 47 1 0 6 1 44 27 0 2 6 3 1 69 25 35 67 chain 11906 chr11 135006516 + 9387749 9387882 AluSp 311 + 154 287 152571 133 chain 9585 chr11 135006516 + 9396091 9396246 L1PA8 5853 - 4 165 162663 32 1 9 46 3 2 4 0 1 14 2 1 40 1 0 12 chain 16363 chr11 135006516 + 9396719 9396926 AluSq2 311 + 90 297 137303 21 2 1 21 0 1 163 chain 3929 chr11 135006516 + 9397425 9397487 Tigger3a 397 + 143 216 208443 17 4 14 5 0 1 36 chain 26090 chr11 135006516 + 9464858 9465156 AluSp 311 + 1 300 99663 148 0 1 150 chain 23104 chr11 135006516 + 9471249 9471541 AluSp 311 - 12 303 115118 167 1 0 124 chain 78968 chr11 135006516 + 9473285 9474332 MER11A 1151 - 0 1151 44074 66 1 0 10 0 4 64 12 13 100 0 32 21 0 27 67 0 4 38 1 2 12 6 9 138 0 13 200 0 2 24 0 11 66 1 0 141 0 8 79 chain 23633 chr11 135006516 + 9477036 9477313 AluY 311 + 19 300 112399 86 0 2 25 0 1 117 0 1 49 chain 4593 chr11 135006516 + 9477411 9477535 L1MB7 1623 + 1314 1429 199710 9 1 0 14 3 0 10 36 32 43 1 0 7 chain 22573 chr11 135006516 + 9486200 9486479 AluSx3 311 + 14 292 117703 109 2 0 9 0 1 159 chain 26259 chr11 135006516 + 9523472 9523782 AluSp 311 - 1 311 98979 310 chain 5730 chr11 135006516 + 9554212 9554282 L1MB3 1562 - 46 116 187833 70 chain 548323 chr11 135006516 + 9561884 9567910 L1PA3long 6157 - 0 6157 1658 4 0 1 3870 0 1 1377 1 129 622 0 1 152 chain 3149 chr11 135006516 + 9568902 9568938 MER45A 178 + 131 167 221948 36 chain 177600 chr11 135006516 + 9575174 9582008 L1MA2 4263 - 679 4217 21200 122 1 5 143 0 1 182 1 0 154 27 13 54 3 4 130 0 1 74 5 0 54 4 6 33 702 3 7 9 0 13 1 0 8 12 0 289 7 13 14 3213 942 94 0 4 23 0 3 5 3 0 78 0 2 56 0 3 389 311 8 50 1 0 111 0 1 4 10 5 115 0 1 34 1 0 76 2 1 79 23 17 23 7 4 45 1 0 4 4 15 23 chain 95467 chr11 135006516 + 9577790 9579087 HSMAR1 1287 + 8 1287 37966 10 0 1 233 12 13 102 10 11 142 28 0 37 2 0 6 7 9 171 0 1 408 1 7 128 chain 68857 chr11 135006516 + 9582734 9583953 L1M1 2793 - 938 2133 48870 156 14 8 27 2 0 18 1 0 269 9 17 39 1 0 52 6 0 21 4 0 17 0 6 12 1 5 29 1 0 99 5 6 71 1 0 12 44 67 21 13 10 54 1 0 9 9 8 20 139 100 42 chain 3361 chr11 135006516 + 9588103 9588139 MER11C 1089 + 0 36 217868 36 chain 7650 chr11 135006516 + 9599577 9599669 U13_ 108 + 4 96 173227 92 chain 25074 chr11 135006516 + 9613821 9614117 AluSp 311 + 2 298 104435 296 chain 9912 chr11 135006516 + 9618836 9618958 MER41D 557 - 0 121 161009 79 1 0 42 chain 129716 chr11 135006516 + 9643598 9645149 LTR12C 1709 - 0 1709 28147 481 0 4 107 9 6 115 0 159 523 22 20 294 chain 11445 chr11 135006516 + 9671602 9671755 L1MB2 1706 - 1472 1623 154514 5 2 0 146 chain 25585 chr11 135006516 + 9671755 9672055 AluSp 311 - 0 300 101800 300 chain 44660 chr11 135006516 + 9694479 9695854 MER21A 919 - 2 917 63422 7 1 0 49 1 0 128 18 1 16 1 0 6 32 31 99 165 155 9 11 0 86 1 0 139 499 68 52 0 13 15 1 2 39 chain 3647 chr11 135006516 + 9695261 9695318 MER39 703 - 383 440 140868 57 chain 20342 chr11 135006516 + 9702470 9702713 7SK 245 + 0 243 126092 243 chain 68462 chr11 135006516 + 9716128 9717277 L1PA8A 6298 + 5442 6290 49063 47 0 7 74 1 5 298 312 0 122 7 6 6 0 1 282 chain 24117 chr11 135006516 + 9737036 9737379 THE1B 368 - 0 368 109652 125 34 45 29 1 0 114 0 15 40 chain 79549 chr11 135006516 + 9764448 9765321 L1PA3long 6157 - 0 873 43807 873 chain 4956 chr11 135006516 + 9769773 9769836 LTR41 747 - 18 82 195630 4 0 1 59 chain 28924 chr11 135006516 + 9789262 9789633 THE1C 375 + 0 375 89352 135 2 6 208 1 0 13 2 3 10 chain 36724 chr11 135006516 + 9793039 9793480 MLT2A1 477 - 2 477 73920 51 6 42 178 0 1 34 5 2 167 chain 30254 chr11 135006516 + 9794586 9794902 AluYb8 318 + 0 316 84047 316 chain 3330 chr11 135006516 + 9795948 9795987 MER65A 464 - 425 464 218406 39 chain 3446 chr11 135006516 + 9813084 9813186 MER5B 177 + 0 103 216259 18 22 24 11 18 17 33 chain 21839 chr11 135006516 + 9832228 9832584 L1PA15 4387 + 3983 4326 120860 121 1 0 27 1 0 53 2 1 22 19 14 35 17 14 44 3 1 11 chain 3111 chr11 135006516 + 9865389 9865422 U7 62 - 28 61 222708 33 chain 10568 chr11 135006516 + 9866295 9866453 L1PA8 5853 + 5697 5853 157963 43 2 1 19 12 11 82 chain 124722 chr11 135006516 + 9891086 9892991 L1PA11 4918 + 2857 4466 29470 310 1 0 165 1 0 571 1 2 22 5 6 15 2 12 55 303 0 45 1 0 100 1 2 231 2 1 13 2 0 59 chain 96658 chr11 135006516 + 9898947 9900066 L1PA6 6164 - 4 1124 37655 6 3 0 838 0 4 272 chain 38972 chr11 135006516 + 9921770 9922268 LTR10F 562 + 0 562 70779 113 0 1 54 5 26 6 0 31 18 9 16 233 0 4 60 chain 45626 chr11 135006516 + 9925014 9925652 MER50B 698 - 36 698 62379 121 1 0 74 3 4 21 4 0 205 4 30 37 10 11 112 7 8 39 chain 6256 chr11 135006516 + 9934147 9934240 MER30 238 + 133 232 183119 12 9 15 72 chain 39668 chr11 135006516 + 9940885 9941347 LTR2 463 - 0 463 69799 94 0 1 368 chain 6198 chr11 135006516 + 9951728 9951804 HSMAR1 1287 + 1211 1287 183598 76 chain 517141 chr11 135006516 + 9952176 9958438 L1PA6 6164 + 0 6095 5468 366 4 0 203 1 0 675 0 1 755 0 1 333 37 10 840 0 1 6 1 0 107 147 0 209 0 4 11 2 0 378 1 2 443 1 3 295 1 0 37 1 0 457 0 1 180 0 4 559 0 1 121 1 2 90 chain 25329 chr11 135006516 + 9974363 9974702 L1PB1 5432 + 4742 5103 103076 65 6 14 132 0 11 27 3 6 106 chain 27284 chr11 135006516 + 9979900 9980190 AluYf4 310 - 6 296 95326 290 chain 4046 chr11 135006516 + 9986617 9986664 L1PB4 2604 - 53 100 206688 47 chain 24315 chr11 135006516 + 9998317 9998596 AluYc3 301 - 14 293 108581 279 chain 29380 chr11 135006516 + 10026001 10026497 MER4A 717 + 0 561 87171 51 0 2 17 17 18 40 20 1 8 9 0 37 0 83 12 4 0 68 0 17 140 23 17 50 chain 148349 chr11 135006516 + 10030809 10032615 L1PA7 6471 - 3 1834 24835 149 1 0 326 1 4 75 13 14 99 0 4 97 12 14 62 0 3 19 0 4 82 0 1 128 0 4 705 0 4 37 chain 6881 chr11 135006516 + 10048610 10048771 L1MA8 2339 - 60 210 178338 11 3 0 12 1 0 17 16 14 29 6 0 33 9 10 24 chain 45329 chr11 135006516 + 10056836 10057360 L1PA6 6164 + 5029 5554 62683 365 3 4 156 chain 36849 chr11 135006516 + 10057360 10057806 L1PA6 6164 + 5557 6003 73735 446 chain 10717 chr11 135006516 + 10057823 10057956 L1PA6 6164 + 6019 6152 157338 133 chain 41636 chr11 135006516 + 10065856 10067184 LTR66 600 - 0 600 67111 95 0 16 31 17 1 45 12 10 61 420 0 175 323 17 149 chain 5843 chr11 135006516 + 10066410 10066489 LTR10G 522 + 413 493 186746 36 4 5 39 chain 227529 chr11 135006516 + 10080354 10083979 L1PA14 3548 + 83 3485 17450 7 2 0 58 4 0 69 1 0 20 2 1 30 2 0 31 2 0 190 8 0 76 8 9 4 1 0 15 0 9 66 1 0 66 6 136 301 0 1 4 1 0 179 4 3 116 1 2 25 1 0 9 3 7 130 8 6 146 1 0 324 331 10 259 0 11 126 6 7 127 0 1 19 20 16 239 3 1 12 5 3 47 2 0 4 2 0 36 2 1 45 3 0 27 9 5 12 0 6 4 9 0 30 0 7 43 1 0 108 19 14 34 48 43 38 5 0 7 1 0 20 chain 206263 chr11 135006516 + 10090715 10093474 L1PA6 6164 - 2 2431 18770 137 0 1 5 1 3 47 0 1 646 0 4 257 1 0 71 1 0 341 1 0 555 335 0 361 chain 135055 chr11 135006516 + 10098675 10100334 L1PA7 6471 + 4785 6468 27008 191 20 20 131 5 21 206 2 1 87 0 1 178 1 0 233 0 9 605 chain 34057 chr11 135006516 + 10122646 10123586 HUERS-P1-int 2401 + 252 1039 77531 25 4 0 14 3 1 7 1 0 8 161 110 11 3 0 8 1 0 25 7 1 11 1 0 8 2 0 8 49 28 13 1 0 5 2 0 6 21 12 13 8 6 16 12 11 74 2 0 11 67 34 34 1 0 63 9 1 11 4 3 129 0 3 45 1 0 10 1 0 8 2 0 14 chain 5762 chr11 135006516 + 10142648 10142718 L1MB2 1706 - 659 729 187517 70 chain 133128 chr11 135006516 + 10153867 10155416 LTR12C 1709 - 0 1709 27401 481 0 4 107 3 1 5 1 0 115 0 159 523 1 0 4 0 1 309 chain 5170 chr11 135006516 + 10155420 10155480 MER21C 908 + 100 160 193350 60 chain 118858 chr11 135006516 + 10155908 10157477 THE1B-int 1605 - 6 1604 31470 370 7 8 762 12 37 59 6 8 206 0 2 15 26 26 62 1 0 43 chain 26252 chr11 135006516 + 10165259 10165565 AluYk4 311 - 9 311 99013 5 2 0 171 2 0 126 chain 46064 chr11 135006516 + 10167321 10168412 L1PREC2 3366 + 2271 3232 61982 321 1 0 11 7 9 92 0 1 13 0 1 34 2 0 53 1 0 42 160 123 35 11 9 21 178 105 14 28 20 10 12 7 19 14 9 12 chain 15823 chr11 135006516 + 10179138 10179373 MER1A 529 + 295 529 138882 148 32 31 55 chain 12135 chr11 135006516 + 10194514 10194683 L1MA3 4352 - 3331 3500 151675 95 0 2 49 1 0 8 1 0 4 1 0 4 0 1 6 chain 545775 chr11 135006516 + 10194699 10200900 L1PA3long 6157 + 4 6156 1979 148 0 1 623 0 128 1978 178 0 3274 chain 4810 chr11 135006516 + 10216639 10216770 MER20 218 - 0 130 197229 33 32 30 29 18 19 19 chain 115697 chr11 135006516 + 10239986 10241547 THE1B-int 1605 - 0 1575 32559 9 0 1 180 54 0 39 0 1 28 1 0 6 1 2 40 3 0 413 2 1 130 9 10 68 1 0 216 2 66 115 0 6 244 chain 8696 chr11 135006516 + 10244299 10244428 MER85 139 - 0 139 167218 23 13 23 93 chain 544587 chr11 135006516 + 10247879 10254001 L1PA4 6152 - 1 6151 2128 153 1 2 415 0 5 268 0 4 562 0 1 814 0 2 234 0 3 172 3 0 99 0 4 276 0 3 211 0 1 636 0 3 560 0 1 485 1 0 73 0 3 943 0 1 216 chain 163006 chr11 135006516 + 10271495 10273844 MER57-int 2662 + 40 2661 22939 30 34 29 9 1 0 72 38 290 29 2 0 83 0 4 118 0 4 139 1 0 23 0 8 110 0 36 54 0 1 114 0 1 4 2 1 57 1 0 113 0 2 28 1 0 200 0 1 4 1 17 288 3 0 418 9 6 25 5 6 69 8 3 8 1 0 60 14 2 12 2 0 18 9 7 6 1 0 9 4 1 24 1 0 9 5 0 33 3 0 31 1 0 5 chain 18030 chr11 135006516 + 10273846 10274067 MER57A1 433 + 0 221 132779 221 chain 24815 chr11 135006516 + 10274068 10274395 AluY 311 + 0 308 105801 57 7 0 75 0 1 97 12 1 64 2 0 13 chain 9692 chr11 135006516 + 10275949 10276159 L1MA8 2339 + 1759 1958 162127 5 1 0 40 40 36 23 7 6 61 5 1 23 1 0 4 chain 67509 chr11 135006516 + 10286139 10286997 L1PA7 6471 - 7 868 49443 59 17 17 203 0 3 369 1 0 52 8 7 44 1 0 93 0 3 11 chain 24223 chr11 135006516 + 10300045 10300355 AluSq2 311 + 0 307 109074 133 1 0 103 7 5 66 chain 3649 chr11 135006516 + 10305840 10305886 L1MD2 1676 - 22 68 212806 46 chain 24925 chr11 135006516 + 10306965 10307384 MER51B 395 + 0 388 105193 61 49 8 121 1 0 39 15 14 43 0 1 10 14 25 66 chain 6007 chr11 135006516 + 10310029 10310104 MER52D 1964 - 780 855 185180 75 chain 90539 chr11 135006516 + 10358004 10359014 L1PA4 6152 - 408 1418 39458 1010 chain 34874 chr11 135006516 + 10359014 10359403 L1PA4 6152 + 5754 6143 76374 389 chain 508998 chr11 135006516 + 10361173 10367710 L1PA6 6164 + 0 6160 6242 260 1 2 148 0 1 5 2 1 150 1 0 119 10 21 336 0 1 811 0 1 48 2 1 266 0 1 158 27 0 773 0 1 78 2 3 4 0 1 50 0 4 18 3 6 404 1 0 211 0 1 255 0 1 155 5 7 45 0 1 301 1 0 149 399 11 195 0 1 346 0 6 37 3 4 479 0 3 128 0 1 151 chain 11167 chr11 135006516 + 10366198 10366328 L1PA6 6164 + 4806 4936 155566 130 chain 3852 chr11 135006516 + 10393199 10393251 L1MA8 2339 + 2215 2266 209611 42 1 0 9 chain 4683 chr11 135006516 + 10395316 10395370 L1MB2 1706 + 1640 1694 198710 54 chain 93741 chr11 135006516 + 10406027 10407098 L1PA4 6152 + 5080 6151 38424 304 0 1 611 2 0 5 6 7 143 chain 76463 chr11 135006516 + 10412855 10413823 LTR5_Hs 974 - 0 974 45231 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 18401 chr11 135006516 + 10434803 10435127 MER1B 344 - 5 307 131784 53 0 21 77 5 6 76 69 25 44 chain 530077 chr11 135006516 + 10441760 10448083 L1PA7 6471 - 13 6466 4178 148 1 3 648 1 0 41 5 92 374 3 2 474 0 2 87 0 1 1083 1 0 31 4 8 575 1 11 71 0 4 171 4 1 86 0 7 192 0 2 150 0 1 571 0 9 192 1 0 1009 0 3 99 3 8 297 chain 28409 chr11 135006516 + 10464042 10464351 AluYb8 318 - 14 318 91545 178 2 0 8 3 0 118 chain 4490 chr11 135006516 + 10475967 10476138 MER103C 291 + 45 213 200909 12 17 13 5 3 0 14 5 12 46 53 50 16 chain 481571 chr11 135006516 + 10487824 10493997 L1PA7 6471 + 539 6467 7670 38 3 0 617 0 11 47 17 36 53 7 5 520 0 1 774 8 6 164 0 1 91 0 2 47 0 26 551 3 0 8 40 40 42 1 0 4 0 1 302 36 20 57 1 5 38 312 6 622 0 4 277 1 0 323 0 4 62 0 1 28 1 6 239 0 6 366 0 3 145 0 1 328 chain 28312 chr11 135006516 + 10491304 10491604 AluYa5 310 + 0 299 91897 97 1 0 202 chain 23143 chr11 135006516 + 10517463 10517750 AluSg7 307 - 9 296 114924 48 2 1 122 1 2 114 chain 8072 chr11 135006516 + 10575222 10575322 MER21A 919 + 25 125 170642 100 chain 37157 chr11 135006516 + 10576452 10576883 L1PA5 6144 - 1 434 73301 170 0 1 223 0 1 38 chain 11218 chr11 135006516 + 10576883 10577011 L1PA5 6144 + 5590 5718 155356 128 chain 12453 chr11 135006516 + 10583384 10583526 L1PA7 6471 + 6327 6469 150449 142 chain 139647 chr11 135006516 + 10635919 10637490 L1PA5 6144 + 4562 6144 26195 66 0 1 260 0 1 130 0 1 125 0 5 140 0 4 694 2 1 154 chain 43410 chr11 135006516 + 10705668 10706149 L1PA3long 6157 + 5661 6142 64920 481 chain 117126 chr11 135006516 + 10720273 10721817 THE1B-int 1605 + 0 1597 32081 20 0 1 242 8 28 139 0 25 233 4 9 9 0 3 8 3 0 60 1 0 116 40 44 403 0 1 6 2 1 237 1 0 12 chain 28514 chr11 135006516 + 10721992 10722301 AluYb8 318 + 0 307 91122 132 2 0 175 chain 11101 chr11 135006516 + 10722381 10722520 THE1B 368 + 230 368 155802 12 1 0 126 chain 7145 chr11 135006516 + 10747461 10747549 HY3 101 + 12 100 176443 88 chain 58190 chr11 135006516 + 10752729 10753451 LTR8 732 + 0 719 53873 320 1 0 328 2 0 71 chain 11880 chr11 135006516 + 10765479 10765630 LTR32 486 + 300 486 152694 15 0 35 136 chain 12838 chr11 135006516 + 10767624 10767960 L1PB1 5432 + 5123 5426 148895 15 1 0 6 1 0 14 5 1 9 6 4 48 2 1 15 1 0 43 2 1 16 1 0 4 28 15 11 3 1 5 1 0 14 2 0 23 29 27 22 1 0 8 chain 24776 chr11 135006516 + 10803848 10804133 AluSp 311 - 18 303 106019 285 chain 9568 chr11 135006516 + 10840861 10841057 Tigger2a 444 + 245 443 162748 9 2 0 46 18 30 28 1 0 6 4 5 28 21 13 33 chain 37370 chr11 135006516 + 10851450 10851909 THE1D-int 1627 - 1152 1610 73003 46 0 2 5 2 0 167 1 0 238 chain 34078 chr11 135006516 + 10857209 10857694 MER1A 529 + 44 529 77500 11 7 8 210 0 1 128 0 4 37 33 22 40 0 5 19 chain 20583 chr11 135006516 + 10881198 10881457 L1PA5 6144 - 0 267 125351 33 0 6 204 0 3 11 2 1 9 chain 27990 chr11 135006516 + 10896391 10896788 L1PB2 3958 - 124 513 93033 55 8 7 90 2 1 64 1 0 63 1 0 102 4 0 7 chain 5045 chr11 135006516 + 10906689 10906749 Charlie1a 1436 - 1309 1369 194683 60 chain 3990 chr11 135006516 + 10909632 10909679 LTR47A 437 + 336 383 207539 47 chain 45378 chr11 135006516 + 10910736 10911421 LTR8 732 - 10 701 62618 136 3 11 9 15 0 11 3 0 3 13 0 15 17 14 17 2 7 148 0 27 161 0 6 115 6 0 11 chain 3366 chr11 135006516 + 10918161 10918230 MIRb 242 + 111 179 217734 33 16 15 20 chain 3143 chr11 135006516 + 10924426 10924460 5S 121 - 78 112 222090 34 chain 510443 chr11 135006516 + 10967903 10974266 L1PA7 6471 - 66 6471 6125 83 16 17 264 6 0 130 0 29 199 0 1 60 2 0 87 0 1 63 0 1 229 1 0 167 5 6 1044 7 1 43 0 4 400 0 4 86 4 2 133 0 2 542 0 4 631 1 6 69 1 0 138 0 1 45 0 3 505 0 1 358 5 1 186 236 0 14 0 237 203 0 5 400 chain 306079 chr11 135006516 + 10985352 10988945 L1P2 5180 + 578 4156 13166 209 1 0 6 2 1 42 0 2 884 3 2 99 1 3 21 2 1 224 0 13 122 0 4 110 39 0 862 1 0 83 0 4 229 7 11 646 chain 9794 chr11 135006516 + 11031796 11031937 MER85 139 + 0 139 161626 101 11 9 29 chain 18805 chr11 135006516 + 11056731 11056931 L1PA3long 6157 - 5 205 130664 200 chain 38696 chr11 135006516 + 11082225 11082682 L1PA7 6471 + 6010 6469 71155 63 0 1 278 0 1 116 chain 4421 chr11 135006516 + 11106895 11106948 MIRb 242 - 31 84 201682 53 chain 27265 chr11 135006516 + 11110680 11111006 THE1A 353 + 0 326 95384 110 1 0 67 0 1 148 chain 21337 chr11 135006516 + 11112156 11112489 LTR23 429 + 0 335 122727 38 4 3 41 1 0 11 20 15 38 0 8 111 8 9 61 chain 4201 chr11 135006516 + 11125532 11125582 LTR49 580 - 530 580 204524 50 chain 2676 chr11 135006516 + 11133878 11133925 MLT1E1A 663 - 186 236 230466 18 6 9 23 chain 3893 chr11 135006516 + 11156978 11157019 L1PBa1 4058 - 2542 2583 208983 41 chain 3626 chr11 135006516 + 11161726 11161790 MER58A 224 + 49 115 213234 28 9 10 10 0 1 17 chain 493960 chr11 135006516 + 11216024 11222949 L1PA4 6152 - 1 5554 7173 333 1 3 2133 1 0 1825 1373 0 1259 chain 120432 chr11 135006516 + 11220350 11221690 L1PA3long 6157 - 0 1338 30869 5 2 0 1333 chain 27427 chr11 135006516 + 11259475 11259850 THE1C 375 + 0 375 94887 38 3 8 9 1 0 65 3 0 229 1 0 26 chain 295522 chr11 135006516 + 11296101 11299729 L1PA7 6471 - 3 3683 13671 261 16 6 38 0 10 14 0 3 143 0 3 312 0 3 54 1 4 18 0 2 71 0 1 22 0 3 486 0 1 335 0 4 167 4 0 122 0 22 697 0 2 87 0 5 19 0 4 163 0 1 73 1 0 69 4 3 4 0 1 447 chain 9887 chr11 135006516 + 11299731 11299850 L1P3 4156 + 2827 2946 161140 119 chain 15959 chr11 135006516 + 11299858 11300067 L1PA7 6471 + 6257 6469 138484 19 3 0 8 0 3 167 0 3 12 chain 22419 chr11 135006516 + 11346076 11346429 L1PB2 3958 - 362 711 118384 42 2 1 18 0 1 82 4 0 13 2 0 9 0 1 32 1 4 10 14 6 68 2 0 36 0 8 18 chain 20645 chr11 135006516 + 11346430 11346689 L1PB2 3958 + 3584 3838 125143 33 1 0 64 1 0 72 2 0 22 1 0 63 chain 54509 chr11 135006516 + 11386594 11387276 L1PA8A 6298 - 7 695 56022 100 25 25 437 0 6 120 chain 13859 chr11 135006516 + 11405414 11405578 THE1D 372 + 208 372 145036 164 chain 6389 chr11 135006516 + 11405710 11405803 MLT1A0 366 + 26 117 182110 11 1 0 56 4 3 21 chain 3086 chr11 135006516 + 11434489 11434727 LTR16C 481 + 210 468 223169 23 188 208 27 chain 33324 chr11 135006516 + 11514008 11514455 L1PA8 5853 + 5408 5852 78698 156 1 0 44 2 0 58 0 1 15 8 6 46 8 7 22 1 0 51 0 3 35 chain 3416 chr11 135006516 + 11532110 11532147 tRNA-Gly-GGA 38 + 0 37 216847 37 chain 10466 chr11 135006516 + 11566112 11566244 L1PA8 5853 - 6 136 158406 88 1 0 17 1 0 25 chain 29579 chr11 135006516 + 11573247 11573664 LTR7B 505 - 15 505 86281 36 23 22 45 0 1 24 1 0 80 0 2 28 3 27 12 0 38 12 1 0 48 0 10 57 0 1 47 chain 11758 chr11 135006516 + 11623265 11623446 MER6B 211 - 0 186 153234 60 3 1 15 2 3 64 8 14 29 chain 49347 chr11 135006516 + 11696436 11696998 L1PA5 6144 + 5575 6138 59490 179 0 1 383 chain 23395 chr11 135006516 + 11707891 11708231 THE1A 353 + 0 341 113676 13 2 0 34 0 1 35 0 1 10 1 0 14 25 26 89 0 1 117 chain 121452 chr11 135006516 + 11708244 11709802 THE1A-int 1579 + 1 1574 30551 11 3 5 201 0 1 54 10 17 350 5 8 4 1 0 4 0 1 52 0 3 35 0 1 6 2 0 33 5 4 380 7 8 395 chain 426657 chr11 135006516 + 11713097 11718591 L1P2 5180 + 2 5175 9382 148 1 0 43 2 1 53 1 0 267 0 1 167 3 4 101 1 0 6 1 0 165 8 9 281 1 0 192 0 1 352 1 3 202 8 11 129 1 6 27 6 3 94 0 2 49 10 0 764 316 0 71 5 9 142 0 1 697 0 2 7 23 13 332 0 4 617 1 0 112 1 0 46 1 0 39 chain 533649 chr11 135006516 + 11732853 11738978 L1PA4 6152 - 9 6142 3748 46 1 10 48 0 1 171 4 0 3479 0 4 1542 17 0 7 0 17 305 4 0 219 0 1 27 0 1 255 chain 3762 chr11 135006516 + 11752627 11752670 MLT2B1 522 + 479 522 210940 43 chain 28822 chr11 135006516 + 11766893 11767235 L1PA7 6471 + 6118 6470 89795 114 0 14 218 4 0 6 chain 3735 chr11 135006516 + 11770855 11770896 MADE1 96 + 45 86 211385 41 chain 141365 chr11 135006516 + 11818339 11819983 L1PA6 6164 - 2 1650 25927 4 1 0 331 1 2 510 1 0 422 0 4 97 0 1 277 chain 34468 chr11 135006516 + 11831507 11831884 L1PA2 6032 + 5655 6032 76962 377 chain 25551 chr11 135006516 + 11847325 11847659 THE1A 353 - 21 353 101978 238 5 4 37 0 2 4 1 0 34 2 0 13 chain 15160 chr11 135006516 + 11872253 11872511 MLT1A0 366 - 1 251 140878 82 8 2 48 38 37 24 1 0 57 chain 42613 chr11 135006516 + 11879131 11879793 MER51A 677 + 0 676 65882 24 10 11 141 20 3 22 10 0 33 8 15 143 3 36 104 16 18 50 1 0 11 10 9 56 chain 26845 chr11 135006516 + 11921701 11922006 AluYf4 310 - 6 310 96821 105 4 3 196 chain 4275 chr11 135006516 + 12014338 12014390 MSTB1 431 + 337 389 203543 52 chain 47719 chr11 135006516 + 12033718 12034484 L1PA17 2846 + 1930 2693 60674 97 1 2 86 1 20 33 10 9 45 0 1 204 11 0 27 0 2 43 9 11 7 8 0 18 1 0 53 20 17 8 2 0 18 1 0 14 6 5 43 chain 19059 chr11 135006516 + 12043429 12043716 L1MB5 1630 + 741 1030 129942 49 6 9 157 0 1 7 21 19 47 chain 23145 chr11 135006516 + 12061151 12061516 THE1B 368 - 2 368 114914 123 66 67 176 chain 38632 chr11 135006516 + 12062843 12063334 THE1B-int 1605 - 1049 1572 71249 105 0 26 184 0 3 106 1 0 4 0 1 11 0 3 80 chain 4691 chr11 135006516 + 12065451 12065509 MER41B 635 - 86 144 198628 58 chain 7411 chr11 135006516 + 12067451 12067545 MER33 330 - 219 313 174697 94 chain 213396 chr11 135006516 + 12102348 12104721 L1PA4 6152 - 0 2381 18264 6 0 5 1549 0 1 652 0 1 56 0 1 110 chain 106049 chr11 135006516 + 12167556 12168769 L1PA5 6144 + 4927 6142 35242 365 1 5 417 0 1 60 0 1 359 4 0 7 chain 3585 chr11 135006516 + 12232406 12232446 MER20 218 - 66 106 213897 40 chain 27437 chr11 135006516 + 12322481 12322836 THE1A 353 - 0 353 94857 75 1 0 168 2 1 109 chain 501146 chr11 135006516 + 12356000 12361609 L1PA4 6152 - 1 6145 6780 160 3 0 99 1 0 111 0 3 1143 0 1 435 0 1 2777 0 5 252 0 3 287 1 2 249 0 525 91 chain 4184 chr11 135006516 + 12387028 12387072 L1P1 4361 - 574 618 204776 44 chain 511897 chr11 135006516 + 12387517 12393639 L1PA6 6164 + 4 6162 5989 445 8 0 84 1 2 34 1 0 225 0 17 102 0 4 93 0 9 939 1 0 233 0 2 135 24 5 705 0 1 150 0 1 50 0 4 413 9 28 365 4 5 471 2 0 792 1 5 468 0 3 165 0 1 202 chain 45733 chr11 135006516 + 12395758 12396275 MER9a2 513 + 0 513 62285 344 4 0 169 chain 42436 chr11 135006516 + 12400379 12400917 MER41A 554 - 4 541 66100 151 2 4 335 24 21 26 chain 7334 chr11 135006516 + 12413701 12413811 L1MB8 1703 - 162 268 175196 6 3 0 67 1 0 33 chain 4502 chr11 135006516 + 12414865 12414919 MIR 256 - 123 177 200752 54 chain 41013 chr11 135006516 + 12472068 12472612 MLT2A2 560 - 0 560 67884 168 5 34 76 0 1 77 0 1 46 1 0 56 1 0 51 17 4 46 chain 11448 chr11 135006516 + 12476731 12477073 L1MC5 759 - 278 647 154506 11 1 0 43 1 2 15 85 127 47 0 3 31 32 18 29 2 0 9 22 20 14 chain 8215 chr11 135006516 + 12486261 12486360 MSTC 436 + 6 105 169859 99 chain 13130 chr11 135006516 + 12493667 12493891 MER30 238 - 0 238 147724 43 7 4 31 1 0 23 2 0 5 13 34 59 11 10 29 chain 7405 chr11 135006516 + 12497945 12498057 FAM 185 + 63 170 174739 90 10 5 12 chain 22432 chr11 135006516 + 12532086 12532425 THE1A 353 - 23 353 118331 28 1 0 6 11 2 80 7 8 25 7 8 63 4 3 107 chain 20172 chr11 135006516 + 12592413 12592782 THE1D 372 - 0 372 126613 56 11 0 6 0 7 79 35 38 15 8 11 42 24 25 93 chain 4398 chr11 135006516 + 12595633 12595682 LTR47A 437 + 326 375 201961 49 chain 13992 chr11 135006516 + 12616497 12616660 L1PA6 6164 + 5155 5317 144602 4 1 0 158 chain 70533 chr11 135006516 + 12616660 12617496 L1PA6 6164 + 5323 6162 48143 680 14 15 21 0 2 121 chain 23677 chr11 135006516 + 12618354 12618720 THE1D 372 + 0 370 112171 132 1 0 25 0 1 28 57 60 17 0 1 106 chain 156031 chr11 135006516 + 12628527 12630714 L1PA7 6471 + 4542 6467 23855 134 0 4 43 0 1 4 0 6 221 1 0 249 1 0 122 312 0 41 0 1 47 0 6 21 0 1 171 0 3 92 0 1 514 8 37 206 chain 26156 chr11 135006516 + 12669975 12670279 AluY 311 + 0 311 99383 14 0 6 112 0 1 178 chain 9032 chr11 135006516 + 12673640 12673841 MLT1F1 559 - 64 256 165435 30 35 33 60 27 26 32 6 0 11 chain 25155 chr11 135006516 + 12678577 12678875 AluYc3 301 - 2 301 103988 184 1 2 113 chain 55112 chr11 135006516 + 12681929 12682639 L1PB 1623 - 766 1474 55634 17 0 1 56 0 1 31 0 1 165 0 1 100 2 1 80 1 0 130 5 4 77 2 0 5 1 0 38 chain 21148 chr11 135006516 + 12682645 12683052 L1PB1 5432 + 5047 5428 123378 5 1 0 51 1 2 9 3 0 24 1 0 8 1 0 10 2 0 3 2 0 8 2 0 53 19 17 43 1 0 14 1 0 6 11 10 17 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 4 chain 4199 chr11 135006516 + 12755396 12755445 Tigger3 1187 + 479 528 204571 49 chain 21209 chr11 135006516 + 12866506 12866797 AluSg7 307 - 3 296 123184 25 1 0 14 0 1 137 0 1 62 2 0 11 3 0 5 6 12 25 chain 10880 chr11 135006516 + 12880412 12880638 Tigger3a 397 - 81 387 156664 49 14 44 4 1 0 41 6 7 12 1 0 17 14 65 37 1 4 6 3 0 20 chain 4785 chr11 135006516 + 12925991 12926053 Charlie1a 1436 + 871 933 197522 62 chain 26540 chr11 135006516 + 12930872 12931182 L1PA8A 6298 + 5981 6291 97881 310 chain 25807 chr11 135006516 + 12943739 12944009 AluYa5 310 - 7 277 100841 270 chain 62974 chr11 135006516 + 12955378 12956090 L1PA4 6152 + 5436 6143 51456 122 1 0 334 1 0 109 2 0 28 1 0 114 chain 3116 chr11 135006516 + 12972543 12972577 LTR16D2 557 - 513 547 222636 34 chain 28744 chr11 135006516 + 12991380 12991878 L1PA15 4387 + 3903 4365 90154 29 1 0 140 16 0 32 1 0 26 2 1 54 14 13 8 4 0 10 2 1 50 6 3 41 8 6 10 7 2 27 1 0 9 chain 21506 chr11 135006516 + 12994639 12994899 AluSq10 312 + 38 298 122124 260 chain 15461 chr11 135006516 + 13008086 13008355 Tigger3a 397 + 54 374 140018 21 24 83 37 13 8 130 11 8 33 chain 16619 chr11 135006516 + 13070864 13071109 L1PA8 5853 - 0 243 136613 91 3 2 19 2 1 38 0 2 10 11 9 71 chain 82274 chr11 135006516 + 13080122 13081050 L1PA5 6144 + 5213 6144 42647 82 1 5 831 1 0 13 chain 304024 chr11 135006516 + 13107397 13111085 L1PA7 6471 + 2774 6466 13242 121 0 3 646 0 1 312 0 1 156 24 7 268 0 1 666 0 5 67 1 2 409 0 1 184 2 0 17 6 17 627 1 0 29 1 0 6 1 2 144 chain 28571 chr11 135006516 + 13122846 13123156 AluYa5 310 + 1 310 90861 131 1 0 178 chain 28917 chr11 135006516 + 13135381 13135683 AluYa5 310 + 2 304 89388 302 chain 76838 chr11 135006516 + 13150978 13151882 L1PA7 6471 + 4038 4947 45065 630 0 4 14 5 7 234 1 0 20 chain 130077 chr11 135006516 + 13151886 13153403 L1PA7 6471 + 4949 6467 28070 106 0 1 293 0 1 274 1 0 843 chain 16869 chr11 135006516 + 13156262 13156479 Tigger3 1187 - 221 437 135917 168 1 0 14 1 0 25 0 1 8 chain 70369 chr11 135006516 + 13177457 13178428 L1PA13 3608 - 120 1085 48229 23 1 0 17 11 7 45 8 5 29 1 0 28 1 0 61 2 0 114 1 0 31 1 0 238 1 5 220 6 11 46 4 3 82 chain 73151 chr11 135006516 + 13179264 13180102 L1PA5 6144 - 4 842 46942 612 0 1 62 1 0 163 chain 28601 chr11 135006516 + 13185310 13185615 AluYa5 310 + 0 303 90725 132 2 0 171 chain 4956 chr11 135006516 + 13194316 13194389 MER58A 224 + 42 115 195636 39 6 6 28 chain 68808 chr11 135006516 + 13201784 13202618 L1PA6 6164 + 5322 6159 48890 255 2 3 252 1 0 88 0 3 236 chain 31912 chr11 135006516 + 13207005 13207435 MLT2A1 477 + 0 475 80993 168 5 2 11 0 1 22 0 1 176 13 59 35 chain 40676 chr11 135006516 + 13240264 13240785 L1PA8 5853 + 5330 5845 68327 234 1 0 44 2 0 52 0 1 17 12 10 52 2 1 19 1 0 85 chain 2711 chr11 135006516 + 13245362 13245398 Charlie4z 170 + 51 86 230091 16 1 0 19 chain 5969 chr11 135006516 + 13258025 13258101 MER5A1 166 - 46 122 185526 76 chain 4081 chr11 135006516 + 13296135 13296183 MIR 256 - 112 160 206177 48 chain 70877 chr11 135006516 + 13310937 13311758 L1PA6 6164 - 5 825 47971 136 8 0 11 1 9 605 1 0 59 chain 24658 chr11 135006516 + 13313818 13314123 AluY 311 + 9 310 106677 81 0 1 42 9 6 166 2 0 5 chain 6529 chr11 135006516 + 13347423 13347835 HY1 111 - 3 111 181010 33 306 0 25 7 9 41 chain 3075 chr11 135006516 + 13372804 13373062 L2a 937 - 634 894 223425 26 205 207 27 chain 3751 chr11 135006516 + 13394666 13394711 MER3 215 - 170 215 211117 45 chain 551022 chr11 135006516 + 13416094 13422242 L1PA4 6152 - 0 6152 1303 172 0 2 80 1 3 587 0 4 158 0 1 824 1 0 2656 4 0 1665 chain 2916 chr11 135006516 + 13453214 13453246 U2 167 + 0 32 226742 32 chain 2718 chr11 135006516 + 13454427 13454493 HAL1 992 + 153 216 229924 17 17 15 27 1 0 4 chain 6272 chr11 135006516 + 13454604 13454758 MER21A 919 + 3 169 182995 41 8 21 17 1 0 6 0 13 27 6 19 10 26 0 12 chain 27261 chr11 135006516 + 13480589 13480894 AluYa5 310 - 6 300 95400 7 9 0 171 2 0 116 chain 75686 chr11 135006516 + 13492250 13493180 L1PA8 5853 + 4924 5853 45662 85 2 0 514 0 8 33 1 0 44 2 0 71 1 0 8 0 6 7 8 1 39 2 1 19 1 0 93 chain 438331 chr11 135006516 + 13501507 13507596 L1PA5 6144 + 5 6143 9097 130 29 43 656 17 0 118 19 0 217 9 0 25 20 19 131 0 1 965 8 0 118 3 7 240 0 1 413 0 4 77 1 0 150 0 1 407 0 1 170 0 745 162 1 0 487 8 7 318 0 1 191 0 1 132 667 0 88 1 0 39 1 2 71 chain 41371 chr11 135006516 + 13506731 13507390 LTR12 884 + 0 880 67440 14 21 22 41 2 134 167 2 0 73 13 0 170 40 7 10 10 13 29 0 133 67 chain 53093 chr11 135006516 + 13508126 13508799 LTR12_ 688 - 0 688 56964 13 1 11 486 0 4 155 1 2 17 chain 12744 chr11 135006516 + 13509040 13509265 MER30 238 + 0 231 149278 14 1 19 9 18 0 51 6 14 89 0 3 23 5 0 9 chain 5853 chr11 135006516 + 13512943 13513016 MER3 215 - 143 215 186655 26 1 0 46 chain 279326 chr11 135006516 + 13528749 13531792 L1PA2 6032 + 2986 6028 14675 2282 1 0 760 chain 34484 chr11 135006516 + 13535778 13536157 L1PA2 6032 + 5645 6024 76935 379 chain 4144 chr11 135006516 + 13536292 13536356 L1M3 994 + 540 602 205322 33 5 3 26 chain 93293 chr11 135006516 + 13541151 13542326 L1PA8A 6298 + 5127 6291 38563 255 0 1 101 1 0 96 2 1 257 13 0 253 5 6 79 5 7 108 chain 3830 chr11 135006516 + 13542781 13542825 MLT2D 439 + 395 439 209937 44 chain 455557 chr11 135006516 + 13550329 13556050 L1PA8 5853 - 167 5803 8557 4 1 0 74 2 0 46 1 0 173 0 2 122 72 0 86 0 2 168 2 0 21 0 6 84 0 1 980 2 1 208 0 4 712 0 2 43 9 13 563 1 0 4 0 1 403 8 11 87 0 9 171 0 1 37 1 0 513 0 1 43 0 2 71 0 1 274 1 0 63 0 1 28 6 0 341 0 4 197 77 36 22 chain 26593 chr11 135006516 + 13558127 13558504 THE1C 375 + 0 375 97689 121 17 14 46 0 1 59 1 0 4 3 4 126 chain 257594 chr11 135006516 + 13561690 13565090 L1PB2 3958 - 155 3550 15839 27 2 1 42 0 3 45 10 9 50 10 9 165 4 0 14 6 4 59 5 0 12 1 0 56 2 0 383 1 0 213 0 1 113 0 1 115 3 0 198 2 4 159 0 1 354 16 0 14 0 1 159 0 1 5 18 28 219 0 5 84 0 3 40 7 12 188 0 1 308 0 5 212 3 5 15 9 0 52 chain 538915 chr11 135006516 + 13576515 13582522 L1PA3long 6157 - 8 6147 3004 415 0 1 1349 1 0 486 0 1 1126 0 1 1175 0 1 690 0 128 622 0 1 143 chain 31816 chr11 135006516 + 13584638 13585115 MER9a3 513 - 6 513 81135 61 4 0 12 4 5 9 0 1 109 1 0 4 21 50 66 10 11 67 0 1 91 0 2 18 chain 510528 chr11 135006516 + 13591397 13597461 L1PA6 6164 + 2 6160 6118 414 0 1 364 6 23 47 0 2 73 0 1 820 0 2 36 1 0 172 0 1 366 4 1 420 0 1 28 0 2 81 1 0 36 0 64 232 0 1 340 0 1 77 0 1 747 0 1 109 0 3 204 1 0 335 0 1 39 1 0 245 0 4 857 2 0 6 chain 293422 chr11 135006516 + 13604638 13608882 L1PA10 4194 + 250 4161 13800 21 2 1 15 1 0 7 37 12 8 1 0 21 2 0 18 16 18 11 7 5 8 7 0 7 2 1 85 2 0 28 1 4 286 340 15 689 1 2 180 1 3 416 0 1 4 1 0 110 0 4 47 0 2 86 9 10 306 1 5 274 1 0 174 5 3 178 1 10 71 0 1 316 1 13 44 0 1 324 2 1 20 3 0 34 1 0 11 chain 28924 chr11 135006516 + 13605234 13605547 AluYb8 318 + 0 312 89354 132 1 0 180 chain 160537 chr11 135006516 + 13612445 13615135 L1MA3 4352 + 1982 4352 23262 42 308 0 34 19 25 230 1 0 8 5 6 7 0 2 176 5 0 117 7 9 85 1 0 208 0 7 174 0 1 13 11 9 126 10 19 97 2 3 63 1 4 111 5 2 306 4 0 63 1 4 159 54 32 39 17 16 81 7 5 16 9 7 29 1 0 11 1 0 3 2 0 21 chain 43081 chr11 135006516 + 13627270 13628005 L1MA1 4479 - 289 997 65316 18 6 0 9 34 15 6 1 0 35 2 0 29 5 4 72 2 4 41 8 5 4 1 0 12 5 0 12 1 15 48 5 4 12 2 0 15 2 1 74 1 0 16 2 0 7 0 7 10 1 0 138 0 1 62 5 0 32 chain 539891 chr11 135006516 + 13644571 13650778 L1PA4 6152 - 1 6139 2829 147 0 1 2074 6 0 1164 0 1 1472 55 0 56 1 0 402 17 0 254 1 0 237 0 9 321 chain 34205 chr11 135006516 + 13665356 13665798 MLT2A1 477 - 0 477 77342 32 0 1 7 16 52 181 0 1 34 5 2 167 chain 494750 chr11 135006516 + 13672800 13678905 L1PA6 6164 + 0 6119 7130 275 1 0 173 20 1 120 1 0 218 0 17 99 0 4 685 0 3 481 0 1 281 0 4 151 0 1 66 23 12 118 0 3 469 2 3 4 0 1 50 0 4 409 0 4 882 0 1 239 0 1 364 4 3 170 1 5 138 10 8 265 9 10 246 22 21 109 chain 33451 chr11 135006516 + 13709291 13709656 L1PA4 6152 + 5782 6151 78485 132 0 4 233 chain 11217 chr11 135006516 + 13714648 13714841 MER30 238 - 8 238 155361 77 16 45 10 15 5 57 1 19 17 chain 4008 chr11 135006516 + 13732016 13732070 MER46C 351 - 297 351 207276 54 chain 15551 chr11 135006516 + 13738354 13738545 L1PA5 6144 - 14 204 139725 158 2 1 31 chain 39239 chr11 135006516 + 13755491 13756026 MER41A 554 - 0 554 70401 9 1 0 60 12 17 22 0 10 5 1 2 336 4 8 85 chain 340369 chr11 135006516 + 13772262 13777048 L1PB1 5432 + 1023 5420 11889 226 0 4 34 0 3 37 0 1 5 4 3 66 9 0 10 0 2 196 3 4 94 0 2 325 1 2 323 319 0 377 20 8 474 0 1 212 0 3 184 55 12 78 0 1 18 1 4 320 0 1 93 1 0 65 1 0 6 0 1 391 8 13 83 7 9 90 5 0 139 0 1 117 0 8 33 1 0 12 5 0 20 1 0 12 1 0 10 5 1 10 2 0 53 2 1 15 1 0 41 7 6 13 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21999 chr11 135006516 + 13798977 13799308 LTR7 482 + 86 444 120231 15 20 14 138 8 39 15 0 1 109 13 14 13 chain 6233 chr11 135006516 + 13802286 13802363 L1MB3 1562 + 1231 1308 183291 77 chain 491546 chr11 135006516 + 13815381 13820879 L1PA3long 6157 - 5 6153 7291 1794 0 4 1183 1 0 2267 8 136 64 8 1 81 0 526 92 chain 63657 chr11 135006516 + 13821516 13822269 L1PA5 6144 + 5404 6143 51166 684 0 4 9 18 0 42 chain 11122 chr11 135006516 + 13826958 13827091 LTR29 598 + 388 521 155725 133 chain 127152 chr11 135006516 + 13833773 13835339 THE1A-int 1579 - 0 1577 28780 464 19 23 138 1 0 845 0 8 99 chain 423315 chr11 135006516 + 13841566 13846313 L1PA4 6152 - 9 4761 9455 1783 0 4 2036 1 0 119 6 7 322 0 1 480 chain 24924 chr11 135006516 + 13849139 13849404 L1HS 6032 - 2 267 105194 265 chain 37270 chr11 135006516 + 13849404 13849803 L1HS 6032 + 5371 5770 73133 399 chain 80556 chr11 135006516 + 13851513 13852569 MER11C 1089 - 16 1089 43367 8 0 1 144 1 0 54 0 1 127 0 1 38 1 0 7 0 4 18 0 1 91 47 46 146 1 0 65 0 4 61 0 9 247 chain 29190 chr11 135006516 + 13867833 13868138 AluYg6 310 + 0 305 88105 305 chain 14386 chr11 135006516 + 13883665 13883821 L1PA3long 6157 + 5984 6140 143253 156 chain 197522 chr11 135006516 + 13887125 13889322 L1PA3long 6157 - 5 2203 19388 151 0 1 277 13 13 1756 chain 189382 chr11 135006516 + 13914506 13916696 L1PA5 6144 - 12 2193 20110 419 0 1 771 3 1 318 1 0 17 10 0 508 0 3 143 chain 6911 chr11 135006516 + 13929047 13929130 5S 121 - 31 114 178103 83 chain 139895 chr11 135006516 + 13935727 13937826 L1PB1 5432 - 10 2115 26156 18 1 0 13 1 0 21 1 0 24 59 44 6 1 0 13 2 1 45 1 0 69 2 0 9 5 1 14 1 0 10 1 0 19 21 0 12 88 25 59 13 15 240 5 6 132 6 0 782 0 1 14 0 4 99 8 10 101 1 0 78 18 127 63 0 7 23 chain 538104 chr11 135006516 + 13954583 13961051 L1PA5 6144 - 0 6144 3134 146 7 0 107 1 0 80 0 1 109 0 1 47 0 1 1493 0 1 482 0 1 737 328 0 220 0 2 1689 0 1 84 1 0 12 7 10 632 0 2 286 chain 16428 chr11 135006516 + 13969522 13969719 MER107 203 + 0 203 137128 173 0 6 24 chain 22482 chr11 135006516 + 13972004 13972280 L1PA5 6144 - 1 499 118097 8 2 0 133 0 1 24 0 223 109 chain 3795 chr11 135006516 + 14003640 14003713 MER44A 345 + 147 229 210460 15 3 9 16 6 9 33 chain 10502 chr11 135006516 + 14005858 14006245 MSTD 398 - 0 398 158238 19 73 72 63 7 0 8 123 143 11 9 8 74 chain 523996 chr11 135006516 + 14008128 14014560 L1PA7 6471 - 1 6471 4767 11 0 7 13 6 15 714 1 0 77 1 6 10 0 3 8 1 5 173 0 1 434 2 1 426 1 7 965 0 1 14 0 3 79 1 0 674 0 1 181 25 0 644 1 0 238 1 0 488 0 19 130 0 1 219 4 0 6 4 8 131 10 15 165 3 0 104 1 0 14 0 1 46 2 0 146 7 14 8 0 1 243 chain 25060 chr11 135006516 + 14016849 14017211 THE1D 372 - 4 372 104507 28 1 0 27 1 2 117 20 25 6 0 1 33 1 0 67 0 1 61 chain 33813 chr11 135006516 + 14028781 14029230 MLT2A1 477 - 0 477 77921 8 0 4 28 0 42 204 0 1 17 28 9 164 chain 3466 chr11 135006516 + 14071901 14071938 MER58A 224 + 43 80 215888 37 chain 3526 chr11 135006516 + 14072747 14072789 MLT1A0 366 + 106 148 214954 42 chain 24207 chr11 135006516 + 14078158 14078447 AluY 311 + 0 292 109172 19 0 4 95 1 0 174 chain 5625 chr11 135006516 + 14078806 14078871 L1MC4 1079 + 684 749 188827 65 chain 8353 chr11 135006516 + 14094863 14094980 Tigger4b 360 - 229 347 169106 47 5 6 65 chain 468922 chr11 135006516 + 14105701 14111431 L1PA8 5853 - 13 5745 8075 63 1 0 17 1 0 16 1 0 16 1 0 31 6 5 13 1 0 71 2 0 44 1 0 553 0 2 37 0 1 269 3 0 39 0 1 80 2 1 611 10 13 186 0 1 5 1 0 724 7 0 6 0 7 20 0 2 124 2 1 8 3 4 146 0 1 9 1 0 361 1 3 74 0 4 232 0 9 289 0 1 217 1 0 306 0 4 6 4 0 138 5 9 321 9 8 35 0 1 29 1 0 364 12 0 194 chain 126954 chr11 135006516 + 14111919 14113438 LTR12C 1709 - 0 1709 28827 405 0 5 46 24 8 17 0 4 107 2 0 6 1 0 74 0 200 837 chain 21980 chr11 135006516 + 14149280 14149637 THE1D 372 - 0 372 120317 20 0 1 24 9 16 116 53 60 135 chain 19032 chr11 135006516 + 14151251 14151517 THE1D 372 - 0 269 130026 174 19 21 14 0 1 59 chain 120264 chr11 135006516 + 14177048 14178390 L1PA3long 6157 - 0 1349 30958 312 0 1 229 0 6 199 0 1 13 1 0 588 chain 485909 chr11 135006516 + 14190051 14195510 L1PA4 6152 - 1 5479 7527 147 1 3 695 1 5 339 0 3 390 0 1 628 0 2 679 0 3 2306 0 2 201 10 12 62 chain 89194 chr11 135006516 + 14195534 14197911 HUERS-P1-int 2401 - 262 2249 39930 15 2 0 47 1 0 7 1 0 9 1 0 4 4 6 10 6 4 24 1 0 3 3 0 8 20 1 12 5 0 15 10 1 35 2 1 15 211 130 17 9 0 14 6 5 19 2 0 13 10 0 7 119 84 51 3 4 42 1 0 76 8 7 8 2 0 38 12 11 6 1 0 10 2 0 30 18 19 46 24 14 32 2 0 79 3 0 28 1 0 8 4 2 25 0 1 5 0 1 12 5 4 11 5 1 37 9 6 10 1 0 179 11 3 100 46 45 86 60 48 11 19 16 17 18 0 23 2 0 11 6 5 30 11 7 43 1 0 11 3 2 13 121 68 14 4 0 34 4 0 13 1 0 25 39 0 4 21 0 31 9 4 14 chain 24282 chr11 135006516 + 14228164 14228558 L1PA13 3608 + 3109 3485 108761 23 5 1 27 1 0 101 1 0 4 18 16 54 7 6 21 1 0 24 1 0 10 2 0 47 2 0 5 2 0 20 1 0 17 chain 131197 chr11 135006516 + 14230814 14232669 L1PA7 6471 - 6 1520 27817 516 0 1 329 1 0 244 344 3 421 chain 44586 chr11 135006516 + 14232669 14233166 L1PA7 6471 + 4452 4949 62712 497 chain 29525 chr11 135006516 + 14340891 14341203 AluYb8 318 - 6 318 86547 312 chain 28471 chr11 135006516 + 14348324 14348631 AluYa5 310 + 0 306 91301 132 1 0 174 chain 3678 chr11 135006516 + 14360568 14360629 LTR54 533 + 131 191 212268 13 1 2 13 2 0 32 chain 5009 chr11 135006516 + 14372681 14372739 L1MC4 1079 + 705 763 195031 58 chain 31031 chr11 135006516 + 14387084 14387552 MLT2A1 477 - 14 477 82467 23 6 2 13 40 42 106 1 0 72 0 1 24 0 1 10 5 2 67 1 0 100 chain 11952 chr11 135006516 + 14391887 14392110 Tigger4a 237 + 13 237 152401 94 65 66 64 chain 3777 chr11 135006516 + 14416779 14416827 MER50 708 + 495 542 210703 8 1 0 39 chain 16039 chr11 135006516 + 14422443 14422663 L1PA8 5853 + 5637 5853 138251 41 2 1 13 1 0 46 5 4 18 1 0 93 chain 14374 chr11 135006516 + 14425859 14426094 Tigger3b 1229 + 20 259 143291 45 8 11 18 16 17 61 0 1 20 5 4 62 chain 20620 chr11 135006516 + 14427783 14428054 Tigger3c 601 + 149 437 125225 137 0 3 74 1 11 6 0 4 53 chain 78947 chr11 135006516 + 14428282 14429340 MER11C 1089 + 0 1073 44085 247 0 9 57 0 4 69 1 0 143 55 54 107 10 13 34 0 1 182 1 0 144 0 1 8 chain 33606 chr11 135006516 + 14429873 14430304 MLT2A1 477 + 2 477 78231 140 0 1 26 1 5 150 1 0 58 1 37 48 0 4 6 chain 459068 chr11 135006516 + 14451350 14456617 L1PA5 6144 + 868 6134 8441 268 0 2 31 9 0 374 0 1 763 2 0 214 0 1 425 0 1 935 0 2 157 1 0 299 0 4 791 0 1 602 0 1 240 9 8 15 1 0 131 chain 25391 chr11 135006516 + 14464111 14464403 AluSq10 312 + 2 294 102735 292 chain 32497 chr11 135006516 + 14472578 14473333 MLT2A1 477 + 0 477 80030 33 0 5 130 5 2 38 318 0 69 1 0 108 3 41 19 0 1 31 chain 25171 chr11 135006516 + 14498662 14498951 AluY 311 + 15 298 103901 192 6 0 91 chain 5582 chr11 135006516 + 14507019 14507083 Tigger2a 444 - 66 130 189260 64 chain 107621 chr11 135006516 + 14517880 14519437 L1MA2 4263 + 2555 4098 34823 89 15 8 49 14 9 29 1 2 111 0 2 45 1 3 164 21 23 43 0 1 67 0 8 252 7 6 72 0 1 27 1 0 8 18 11 36 0 4 37 1 0 134 13 10 146 15 13 93 7 0 17 1 0 23 chain 24259 chr11 135006516 + 14525266 14525559 AluYc3 301 - 3 301 108898 5 3 0 38 0 7 133 1 2 113 chain 3808 chr11 135006516 + 14534069 14534375 MER68B 564 + 215 557 210270 20 117 139 32 66 77 18 9 0 7 25 37 12 chain 3305 chr11 135006516 + 14542391 14542434 MADE1 96 - 2 69 218866 35 0 24 8 chain 28747 chr11 135006516 + 14545806 14546229 LTR7B 505 + 0 495 90136 108 0 10 24 8 10 23 0 38 12 3 27 26 0 2 85 1 0 11 3 0 12 0 1 52 14 13 41 chain 149813 chr11 135006516 + 14546379 14548418 HERVH-int 3825 + 1921 3825 24646 75 0 2 25 0 3 60 4 25 184 0 1 549 13 13 115 165 0 42 1 0 62 0 3 27 1 2 716 chain 28159 chr11 135006516 + 14550175 14550598 LTR7B 505 + 1 495 92429 107 0 10 24 8 10 23 0 38 12 3 27 26 0 2 85 5 4 10 4 0 7 0 1 54 14 13 41 chain 12723 chr11 135006516 + 14552797 14553002 L1PA16 3655 - 36 231 149360 16 39 29 150 chain 17264 chr11 135006516 + 14562438 14562633 L1PA5 6144 + 5937 6132 134883 195 chain 346319 chr11 135006516 + 14590796 14595363 L1P2 5180 + 4 4299 11718 100 0 1 34 12 11 97 6 5 53 0 1 202 2 1 6 1 0 272 1 0 6 1 0 140 7 32 283 0 1 83 1 4 49 0 5 18 11 15 357 2 0 56 312 0 97 0 5 381 1 0 14 0 1 1285 0 2 48 0 1 629 chain 27152 chr11 135006516 + 14596409 14596781 THE1C-int 1605 + 0 429 95750 133 7 61 65 1 0 49 4 8 113 chain 162754 chr11 135006516 + 14596821 14598685 L1PA5 6144 - 14 1860 22973 833 19 0 989 0 1 23 chain 19804 chr11 135006516 + 14599547 14599779 L1PA7 6471 + 6237 6469 127801 232 chain 113700 chr11 135006516 + 14612432 14613816 LTR12C 1709 + 0 1709 33173 170 0 7 88 1 2 81 2 0 231 1 0 195 0 322 15 1 0 6 3 1 106 0 4 357 3 0 124 chain 514439 chr11 135006516 + 14616310 14622422 L1PA6 6164 - 2 6164 5732 158 1 2 119 0 3 344 0 3 206 0 10 108 0 1 296 1 0 1206 1 2 428 0 2 33 6 1 12 1 0 31 1 2 482 0 1 153 1 3 231 0 4 31 0 1 142 0 1 205 1 5 283 3 0 5 1 4 820 0 17 240 6 5 42 0 2 53 2 3 7 0 1 215 0 2 237 chain 17841 chr11 135006516 + 14629915 14630117 L1PA4 6152 + 5949 6151 133273 202 chain 545112 chr11 135006516 + 14649712 14655706 L1PA2 6032 - 0 6026 2061 135 7 8 1656 1 5 2865 1 31 438 1 0 638 1 0 217 1 0 33 chain 10031 chr11 135006516 + 14662613 14662738 L1PA7 6471 + 6349 6469 160419 112 5 0 8 chain 9757 chr11 135006516 + 14674121 14674363 L1MB2 1706 - 18 257 161814 60 81 96 8 22 0 39 0 4 32 chain 549673 chr11 135006516 + 14682875 14688990 L1PA3long 6157 + 11 6157 1491 352 0 1 218 0 1 1606 20 59 327 0 4 1824 18 4 1750 chain 32247 chr11 135006516 + 14689011 14689379 L1PA4 6152 + 5768 6136 80444 368 chain 21111 chr11 135006516 + 14691022 14691281 L1PA5 6144 - 12 272 123523 6 1 0 67 1 0 38 0 3 146 chain 12755 chr11 135006516 + 14700866 14701032 MER51B 395 + 230 395 149236 15 7 6 144 chain 2645 chr11 135006516 + 14702509 14702556 MER47A 366 - 17 62 231096 15 6 4 26 chain 84644 chr11 135006516 + 14705725 14706839 MER11A 1151 - 0 1151 41662 14 8 8 63 0 2 78 17 18 6 0 1 45 0 1 56 6 40 134 0 1 80 4 8 8 0 1 198 0 1 20 2 1 74 0 2 92 2 0 21 8 0 178 chain 20467 chr11 135006516 + 14737121 14737367 L1P1 4361 - 33 280 125712 23 1 0 50 0 3 101 1 0 70 chain 559517 chr11 135006516 + 14737454 14743484 L1PA2 6032 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5 754 0 2 117 3 1 65 0 4 875 0 2 167 0 1 253 1 4 400 1 0 262 0 4 143 6 55 690 1 0 55 1 0 83 0 4 613 0 1 15 4 0 111 chain 346309 chr11 135006516 + 14817434 14821783 L1PA7 6471 - 12 4311 11719 432 0 5 159 0 2 149 3 4 85 1 4 114 5 1 30 0 5 275 1 2 86 0 1 16 24 0 4 44 0 269 0 2 140 1 0 128 4 3 707 1 0 250 1 3 4 1 0 49 9 9 774 0 4 102 10 0 58 1 0 6 8 10 44 0 4 62 0 6 287 1 0 4 chain 58739 chr11 135006516 + 14827360 14828815 L1PA7 6471 + 5632 6468 53559 354 720 102 101 0 3 269 4 0 7 chain 169935 chr11 135006516 + 14831714 14833589 L1PA3long 6157 - 0 1902 22056 5 1 0 1237 0 2 90 0 26 542 chain 36061 chr11 135006516 + 14838366 14838775 L1PA5 6144 + 5517 5926 74819 409 chain 18558 chr11 135006516 + 14838775 14838992 L1PA5 6144 + 5927 6144 131335 217 chain 561366 chr11 135006516 + 14865897 14872044 L1PA3long 6157 + 4 6157 308 1718 1 0 33 0 1 1506 0 3 1283 0 3 1606 chain 48233 chr11 135006516 + 14884433 14885031 L1PA7 6471 - 3 795 60288 9 2 0 256 1 5 158 0 191 145 0 1 27 chain 131561 chr11 135006516 + 14885060 14886748 L1P2 5180 + 1702 3362 27732 394 1 0 165 0 2 56 1 0 56 7 6 4 0 1 197 0 3 195 1 4 121 65 0 20 1 27 69 1 0 161 1 0 49 0 4 21 0 3 102 chain 4449 chr11 135006516 + 14894411 14894480 MER8 282 - 212 282 201351 13 5 6 51 chain 184928 chr11 135006516 + 14904200 14906233 L1PA3long 6157 + 4116 6153 20505 1194 0 4 531 1 0 169 0 1 138 chain 19359 chr11 135006516 + 14949332 14949675 L1PA16 3655 - 36 354 129050 16 92 66 144 0 1 91 chain 197354 chr11 135006516 + 14953028 14955952 Charlie3 2679 - 83 2660 19399 486 0 1 75 3 4 732 7 8 33 0 1 167 0 2 131 0 3 6 365 0 15 21 22 90 2 0 5 0 2 225 0 2 79 0 1 36 0 1 106 0 2 290 12 15 22 1 0 15 chain 5258 chr11 135006516 + 14981407 14981463 L1PA6 6164 + 6105 6161 192430 56 chain 4687 chr11 135006516 + 14982261 14982454 MSTC 436 + 190 394 198663 39 14 13 5 2 0 15 96 110 22 chain 17586 chr11 135006516 + 14983321 14983510 L1PA3long 6157 + 2987 3176 134037 189 chain 105866 chr11 135006516 + 14983510 14984681 L1PA3long 6157 + 3177 4350 35293 341 0 2 830 chain 164144 chr11 135006516 + 14984681 14986481 L1PA3long 6157 + 4354 6152 22787 1042 1 0 428 1 0 328 chain 399184 chr11 135006516 + 15015064 15019862 L1PA7 6471 + 1673 6467 10132 816 1 0 45 5 0 98 9 0 257 0 4 1516 0 1 154 15 15 82 0 1 616 2 3 318 1 0 15 0 4 518 0 1 330 chain 7743 chr11 135006516 + 15030026 15030122 MER85 139 + 0 96 172638 96 chain 178337 chr11 135006516 + 15040168 15042548 L1PA10 4194 + 1782 4150 21132 146 0 1 86 6 10 102 0 1 7 15 10 471 1 0 6 0 1 33 3 0 7 10 3 324 17 0 145 4 5 64 0 3 252 1 0 394 4 0 59 8 9 13 0 1 12 11 27 142 3 0 34 chain 9970 chr11 135006516 + 15053083 15053222 MLT1B 390 + 247 387 160727 107 3 5 4 1 0 24 chain 7816 chr11 135006516 + 15057782 15057878 Tigger2b_Pri 1066 + 809 905 172213 96 chain 85699 chr11 135006516 + 15084504 15085570 MER11B 1079 - 0 1079 41268 29 12 1 18 0 1 96 0 20 37 0 1 104 0 2 102 1 0 348 4 5 315 chain 72876 chr11 135006516 + 15086568 15087665 HERVK11-int 2540 - 315 1354 47082 42 14 8 45 19 24 6 12 0 70 6 5 74 0 1 115 1 0 51 1 0 4 0 1 48 17 12 429 25 8 28 12 1 27 22 11 29 chain 86917 chr11 135006516 + 15091035 15092088 MER11B 1079 - 22 1079 40818 26 0 1 153 0 1 107 1 3 90 5 4 351 0 1 320 chain 17890 chr11 135006516 + 15117032 15117225 L1PA4 6152 + 5958 6151 133133 193 chain 2956 chr11 135006516 + 15141377 15141408 MIRb 242 + 103 134 225945 31 chain 6429 chr11 135006516 + 15164369 15164446 L1PA5 6144 - 6 88 181777 39 0 5 38 chain 49776 chr11 135006516 + 15214850 15215420 L1PA5 6144 - 9 582 59176 241 0 1 87 0 1 238 0 1 4 chain 17089 chr11 135006516 + 15252850 15253068 MER30 238 - 8 238 135354 103 8 20 107 chain 4417 chr11 135006516 + 15268384 15268545 MER63A 208 + 0 135 201722 25 95 69 41 chain 205091 chr11 135006516 + 15291414 15293701 L1PA4 6152 - 0 2292 18850 149 1 2 1649 0 4 488 chain 25398 chr11 135006516 + 15316431 15316730 AluY 311 + 11 304 102691 115 6 0 178 chain 109898 chr11 135006516 + 15335737 15337008 L1PA6 6164 + 4872 6156 34239 196 1 0 219 0 13 98 0 1 757 chain 28636 chr11 135006516 + 15361213 15361527 AluYa5 310 - 0 310 90577 178 4 0 132 chain 18906 chr11 135006516 + 15371534 15371734 L1PA2 6032 - 4 204 130345 200 chain 22033 chr11 135006516 + 15371734 15371970 L1PA2 6032 + 5601 5837 120095 236 chain 28771 chr11 135006516 + 15386641 15387053 LTR7 482 - 0 482 90011 174 5 4 14 0 32 33 0 1 109 23 61 54 chain 3304 chr11 135006516 + 15390979 15391017 L1PA6 6164 - 5 43 218898 38 chain 30458 chr11 135006516 + 15399099 15399495 HERVL-int 5654 + 0 407 83519 30 0 1 313 0 1 22 14 23 17 chain 18693 chr11 135006516 + 15409572 15409776 L1PA3long 6157 - 0 204 130966 204 chain 23643 chr11 135006516 + 15410282 15410592 L1PA6 6164 - 2 322 112342 9 3 0 228 6 18 58 0 1 6 chain 72739 chr11 135006516 + 15420859 15421666 L1PA3long 6157 - 8 812 47146 54 3 0 750 chain 8469 chr11 135006516 + 15443771 15443861 L1PA2 6032 - 3 93 168464 90 chain 40656 chr11 135006516 + 15479483 15479958 L1PA7 6471 + 5993 6468 68358 475 chain 15510 chr11 135006516 + 15484950 15485151 MLT2A1 477 - 0 250 139860 38 7 56 156 chain 42668 chr11 135006516 + 15495958 15496527 MLT2A2 560 - 0 560 65824 72 0 3 192 6 7 82 0 1 46 1 0 28 0 1 30 1 0 52 13 0 46 chain 24754 chr11 135006516 + 15500450 15500750 AluY 311 + 5 296 106147 121 9 0 170 chain 22963 chr11 135006516 + 15530357 15530616 L1PA5 6144 - 0 259 115790 259 chain 15411 chr11 135006516 + 15579252 15579658 L1MC1 2226 + 1778 2149 140165 64 11 12 10 26 19 4 0 1 20 7 6 58 17 14 9 2 0 52 38 30 6 3 0 21 2 0 19 1 0 6 17 7 13 chain 6031 chr11 135006516 + 15582943 15583173 LTR12C 1709 + 936 1086 184972 19 143 63 68 chain 12416 chr11 135006516 + 15589921 15590148 MER30 238 - 6 238 150570 20 16 13 74 14 26 65 23 19 15 chain 25221 chr11 135006516 + 15690758 15691062 AluSp 311 + 2 306 103632 304 chain 55820 chr11 135006516 + 15707383 15708010 SVA_B 1603 - 23 662 55237 50 0 14 526 1 0 14 1 0 35 chain 7353 chr11 135006516 + 15708113 15708199 MSTB 430 - 343 429 175072 86 chain 5051 chr11 135006516 + 15772877 15772950 Charlie4a 502 + 358 431 194629 56 2 1 7 0 1 8 chain 57497 chr11 135006516 + 15824285 15824957 L1PA7 6471 - 10 689 54241 52 0 6 430 0 1 190 chain 7482 chr11 135006516 + 15854428 15854605 L1PB1 5432 + 5266 5420 174255 15 1 0 15 3 0 15 11 0 16 8 5 14 8 6 18 1 0 20 2 1 13 1 0 16 chain 18726 chr11 135006516 + 15872109 15872318 L1PA4 6152 - 1 210 130888 209 chain 48636 chr11 135006516 + 15889837 15890396 MLT2A2 560 - 0 560 60002 356 0 1 203 chain 5800 chr11 135006516 + 15945782 15945845 L1PA5 6144 + 6069 6132 187144 63 chain 24379 chr11 135006516 + 15995935 15996194 L1HS 6032 - 0 259 108201 259 chain 144790 chr11 135006516 + 16085999 16088158 L1MA2 4263 + 1896 4114 25355 60 73 34 63 1 0 147 0 1 28 2 0 415 2 0 6 0 1 259 0 2 10 0 102 211 11 12 41 5 0 285 14 12 5 1 0 72 1 0 9 4 7 32 1 0 21 0 1 38 20 28 11 3 0 95 0 1 45 42 41 65 34 31 27 chain 30779 chr11 135006516 + 16088402 16088786 THE1B-int 1605 + 1208 1591 82906 190 1 0 95 0 1 64 1 0 33 chain 34192 chr11 135006516 + 16096905 16097348 L1PA6 6164 + 5707 6152 77359 50 0 1 235 17 18 141 chain 30122 chr11 135006516 + 16098281 16098598 AluYb8 318 - 1 318 84420 317 chain 9872 chr11 135006516 + 16098598 16098774 MSTA 426 - 226 426 161222 63 49 73 64 chain 20160 chr11 135006516 + 16098794 16099156 L1PA15 4387 + 3932 4306 126647 98 24 44 30 1 0 26 1 0 55 25 22 10 1 0 46 9 7 36 chain 157426 chr11 135006516 + 16123237 16125515 L1PB1 5432 + 3126 5382 23673 132 1 0 108 1 2 4 1 0 104 14 14 238 1 4 48 0 1 209 1 2 226 0 1 48 0 3 31 14 13 71 1 0 224 2 7 10 4 0 178 0 5 6 10 7 38 1 4 239 1 2 9 9 0 26 1 0 4 1 0 14 5 1 9 2 0 48 31 31 10 1 0 27 1 0 16 18 8 18 3 1 5 1 0 14 2 0 24 1 0 12 chain 8051 chr11 135006516 + 16157825 16157953 Tigger1 2417 + 2197 2301 170752 55 24 0 49 chain 37998 chr11 135006516 + 16160098 16160517 L1PA4 6152 - 1 420 72135 419 chain 542696 chr11 135006516 + 16162934 16169058 L1PA5 6144 + 3 6144 2392 276 1 12 437 0 1 574 0 1 1369 0 1 392 7 9 2756 0 1 162 0 1 36 1 0 113 chain 29672 chr11 135006516 + 16223168 16223478 AluYa5 310 - 0 310 85949 310 chain 23230 chr11 135006516 + 16268955 16269322 THE1C 375 - 0 375 114544 177 22 19 36 35 46 97 chain 111630 chr11 135006516 + 16269327 16271186 THE1C-int 1605 - 5 1604 33764 64 0 1 450 0 1 323 48 44 5 2 0 138 318 0 114 20 27 25 9 6 5 0 3 60 10 11 152 1 55 115 chain 4834 chr11 135006516 + 16271657 16271717 Charlie3 2679 + 110 170 196986 60 chain 5411 chr11 135006516 + 16278187 16278254 L1MC1 2226 + 188 255 190882 67 chain 19947 chr11 135006516 + 16296743 16297010 AluY 311 + 38 291 127311 95 13 1 60 2 0 97 chain 40044 chr11 135006516 + 16340905 16341385 L1PA5 6144 - 2 495 69255 7 8 0 129 0 7 63 0 14 273 chain 41677 chr11 135006516 + 16397236 16397723 L1PA7 6471 + 5966 6459 67058 76 0 2 155 0 4 256 chain 53575 chr11 135006516 + 16412230 16412894 L1PA7 6471 + 5802 6467 56627 500 13 17 137 3 0 11 chain 40666 chr11 135006516 + 16446956 16447521 L1PA13 3608 + 2814 3371 68342 151 2 0 167 10 13 15 1 0 114 2 0 62 11 10 10 5 0 15 chain 149947 chr11 135006516 + 16448883 16450569 L1PA4 6152 - 0 1704 24614 6 0 5 161 2 3 675 0 4 239 0 1 594 0 7 9 chain 28858 chr11 135006516 + 16488195 16488501 AluYa5 310 + 0 305 89627 132 1 0 173 chain 534278 chr11 135006516 + 16517879 16524018 L1PA4 6152 + 0 6152 3680 735 0 1 1171 0 9 784 1 2 462 1 0 1072 0 1 28 0 1 1054 2 1 657 1 2 151 0 1 20 chain 137759 chr11 135006516 + 16536505 16538006 L1PA3long 6157 - 410 1911 26521 1501 chain 90701 chr11 135006516 + 16538006 16538988 L1PA3long 6157 + 3275 4257 39358 982 chain 536909 chr11 135006516 + 16542041 16548189 L1PA4 6152 + 7 6150 3323 121 14 0 14 12 26 277 1 0 131 1 0 130 7 0 29 0 1 304 1 0 116 0 3 281 1 0 1246 2 1 826 3 8 427 3 0 318 0 1 1117 1 0 372 0 1 393 chain 516953 chr11 135006516 + 16557880 16564016 L1PA6 6164 + 0 6160 5489 195 0 1 86 5 6 279 1 0 83 0 4 4 4 0 232 13 17 53 0 1 62 1 0 804 3 4 363 0 2 479 1 2 239 0 5 264 1 0 4 0 1 347 0 2 157 1 0 1459 0 1 12 0 5 142 0 3 684 6 7 8 1 0 143 chain 17580 chr11 135006516 + 16566913 16567216 L1MA4A 3247 + 1538 1836 134055 42 2 0 38 16 15 120 35 33 50 chain 4326 chr11 135006516 + 16571551 16571598 L1PA5 6144 + 5589 5636 202876 47 chain 23510 chr11 135006516 + 16571598 16571875 L1PA5 6144 + 5719 5996 113071 277 chain 13345 chr11 135006516 + 16571876 16572022 L1PA5 6144 + 5998 6144 146910 146 chain 7755 chr11 135006516 + 16587160 16587245 L1HS 6032 + 5947 6032 172569 85 chain 73415 chr11 135006516 + 16602179 16603142 L1PA8 5853 + 4877 5838 46828 130 0 2 71 0 1 447 3 1 35 1 0 44 2 0 5 3 1 65 1 0 17 0 5 39 2 1 19 2 1 77 chain 12384 chr11 135006516 + 16603536 16603688 L1PA16 3655 + 3419 3571 150695 152 chain 10749 chr11 135006516 + 16605220 16605569 L1MA6 2487 - 216 558 157202 20 93 83 93 93 96 50 chain 29533 chr11 135006516 + 16612106 16612637 L1MA3 4352 + 3842 4351 86504 56 1 2 93 34 28 71 47 37 74 0 3 24 4 0 30 2 0 22 8 6 28 2 1 11 1 0 23 chain 39365 chr11 135006516 + 16644866 16645358 L1PB1 5432 - 709 1203 70225 100 0 2 392 chain 534956 chr11 135006516 + 16659461 16665595 L1PA5 6144 - 0 6141 3599 156 0 7 348 13 0 650 0 5 652 0 6 1150 0 1 308 0 1 190 0 3 931 12 2 180 0 2 79 0 1 1229 3 7 233 chain 46240 chr11 135006516 + 16668035 16668783 L1PB1 5432 - 5 955 61819 5 2 0 18 1 0 13 1 0 21 1 0 22 7 5 12 1 0 4 2 0 18 39 28 45 6 5 10 2 1 52 2 0 9 5 1 6 0 80 9 1 2 262 0 1 57 0 149 115 chain 21371 chr11 135006516 + 16693746 16694539 L1PREC2 3366 + 136 534 122616 34 1 0 10 2 0 20 7 2 7 1 0 24 13 11 13 3 1 33 370 2 13 6 1 36 15 8 49 1 0 29 0 5 6 6 1 29 2 1 63 chain 507843 chr11 135006516 + 16700042 16706284 L1PA6 6164 + 14 6159 6341 436 13 3 110 11 13 211 0 17 156 1 2 21 0 1 87 0 1 100 1 0 71 5 8 4 0 1 18 1 5 396 0 1 115 5 6 535 1 2 140 0 1 23 2 1 692 1 0 567 125 0 607 0 4 1029 1 0 155 0 6 216 0 1 213 17 16 149 2 0 5 chain 53465 chr11 135006516 + 16733288 16734124 L1PB1 5432 - 12 783 56711 16 1 0 11 4 3 20 1 0 24 2 0 12 11 8 18 14 5 7 3 0 16 2 1 42 1 0 16 2 1 53 2 0 9 16 11 13 1 0 17 47 14 227 1 0 227 chain 9800 chr11 135006516 + 16741548 16741657 L1P1 4361 + 3764 3873 161592 109 chain 55457 chr11 135006516 + 16741657 16742250 L1PA3long 6157 + 5564 6157 55433 593 chain 22034 chr11 135006516 + 16743390 16743718 L1PA14 3548 + 3069 3391 120092 21 0 2 18 2 0 4 2 0 17 2 0 6 1 0 84 1 0 19 0 7 85 1 0 8 5 1 31 9 7 12 chain 472383 chr11 135006516 + 16749528 16755284 L1PA7 6471 + 693 6470 7961 208 15 25 707 0 2 243 0 2 572 0 3 80 1 8 222 33 8 343 0 1 386 2 0 415 0 3 88 1 0 119 0 1 261 1 4 277 0 4 267 0 1 18 2 4 578 1 0 56 1 0 15 0 3 83 0 2 54 0 7 436 15 14 94 1 2 161 chain 60430 chr11 135006516 + 16773062 16773876 Charlie3 2679 + 1830 2670 52622 26 0 18 20 3 4 83 2 1 93 0 1 306 2 3 84 1 0 86 0 6 34 15 14 6 0 2 53 chain 30825 chr11 135006516 + 16845354 16845798 L1MA3 4352 + 3781 4205 82821 274 0 2 36 32 13 7 3 0 92 chain 16776 chr11 135006516 + 16861082 16861367 MER2 342 + 35 329 136178 32 25 20 107 8 0 20 0 10 23 0 3 20 4 13 46 chain 19255 chr11 135006516 + 16863799 16864037 7SK 245 + 0 239 129363 131 6 7 101 chain 126195 chr11 135006516 + 16908907 16910411 SVA_C 1631 + 0 1629 29035 13 9 9 570 0 1 98 1 0 112 1 0 44 30 32 37 0 132 94 1 0 276 3 0 196 4 0 15 chain 32972 chr11 135006516 + 16910522 16910930 LTR7C 471 + 0 408 79260 372 0 1 4 1 0 31 chain 167323 chr11 135006516 + 16927852 16929821 SVA_D 2077 + 17 2077 22355 16 7 9 291 12 8 219 0 40 87 0 40 189 0 36 82 22 24 375 1 0 4 37 10 8 1 0 521 0 4 97 chain 1737 chr11 135006516 + 16929157 16929194 SVA_D 2077 + 1135 1172 85745 37 chain 89529 chr11 135006516 + 16936912 16937897 L1PA3long 6157 - 1 991 39800 855 0 1 8 0 4 122 chain 9197 chr11 135006516 + 16968719 16968855 L1MA8 2339 + 1623 1758 164568 13 13 11 30 0 1 80 chain 3084 chr11 135006516 + 16991408 16991444 MLT1K 546 + 491 527 223248 36 chain 5772 chr11 135006516 + 16995968 16996030 U6 107 - 1 63 187421 62 chain 520514 chr11 135006516 + 17050037 17056202 L1PA2 6032 - 0 6032 5105 8 5 0 5 3 0 2663 5 6 218 0 1 88 1 0 1491 0 1 416 11 12 9 1 0 334 128 0 66 0 7 32 9 4 92 0 1 322 1 0 102 1 0 154 chain 70221 chr11 135006516 + 17060202 17061912 L1M1 2793 + 1372 2469 48304 26 0 2 31 304 0 233 2 0 74 1 5 167 0 2 8 382 66 44 1 0 41 10 9 22 18 17 157 0 1 14 1 5 138 20 19 16 chain 13639 chr11 135006516 + 17070627 17070785 L1PA5 6144 + 5985 6143 145819 158 chain 160321 chr11 135006516 + 17071144 17073074 SVA_F 1814 - 0 1804 23295 627 1 0 10 1 0 166 1 0 10 1 0 39 127 14 20 49 0 60 0 40 818 chain 4666 chr11 135006516 + 17072000 17072078 SVA_F 1814 - 725 803 141642 78 chain 1668 chr11 135006516 + 17072079 17072127 SVA_F 1814 - 627 675 152839 48 chain 3906 chr11 135006516 + 17072147 17072194 SVA_F 1814 - 646 692 188558 36 1 0 10 chain 4346 chr11 135006516 + 17080936 17080990 L1M1 2793 + 2632 2685 202635 45 1 0 8 chain 10146 chr11 135006516 + 17090432 17090562 MER44A 345 - 81 216 159869 10 0 1 7 0 1 62 0 3 51 chain 5431 chr11 135006516 + 17095502 17095580 MADE1 96 - 0 96 190696 33 3 21 42 chain 4309 chr11 135006516 + 17097325 17097415 U14 88 - 0 88 203103 36 10 7 23 6 7 15 chain 25118 chr11 135006516 + 17100018 17100313 AluSp 311 - 15 311 104184 192 0 1 103 chain 6168 chr11 135006516 + 17104891 17105003 L1MB7 1623 - 856 974 183815 47 27 33 38 chain 33472 chr11 135006516 + 17107305 17107749 LTR2 463 + 0 463 78455 61 0 3 93 0 5 52 0 5 128 25 28 40 0 3 45 chain 26432 chr11 135006516 + 17126939 17127293 L1PA8 5853 - 0 348 98301 93 1 0 19 2 1 49 5 4 8 1 0 71 3 1 43 1 0 48 0 1 10 chain 29627 chr11 135006516 + 17153862 17154175 AluYb8 318 - 5 318 86130 313 chain 26778 chr11 135006516 + 17166476 17166785 THE1C-int 1605 + 1291 1600 97059 309 chain 12224 chr11 135006516 + 17170572 17170771 MER2 342 + 22 224 151323 21 0 1 4 33 35 141 chain 24364 chr11 135006516 + 17187050 17187352 AluSp 311 + 10 311 108295 265 0 2 11 3 0 23 chain 27874 chr11 135006516 + 17195852 17196161 AluYa5 310 + 0 302 93442 118 6 0 8 1 0 176 chain 3531 chr11 135006516 + 17199834 17199874 MER33 330 - 248 288 214853 40 chain 29529 chr11 135006516 + 17200260 17200571 AluYb8 318 - 3 314 86530 311 chain 22046 chr11 135006516 + 17217310 17217578 AluY 311 + 6 275 120036 126 0 1 142 chain 7483 chr11 135006516 + 17236418 17236504 L1PA8 5853 + 5767 5853 174248 86 chain 36020 chr11 135006516 + 17264649 17265051 L1PA4 6152 + 5750 6152 74871 402 chain 8382 chr11 135006516 + 17274453 17274584 LTR8 732 - 15 150 168952 67 21 25 43 chain 29053 chr11 135006516 + 17293292 17294401 L1PB2 3958 - 183 1319 88747 22 2 0 68 5 4 64 1 0 63 695 725 76 1 2 112 chain 5403 chr11 135006516 + 17357851 17357915 Tigger4a 237 - 139 203 190969 64 chain 27344 chr11 135006516 + 17358037 17358329 AluY 311 + 18 311 95128 114 0 1 178 chain 354107 chr11 135006516 + 17360908 17364840 L1PA4 6152 - 9 3983 11505 152 1 0 689 0 4 552 0 28 264 0 3 96 0 4 1190 6 10 982 chain 4165 chr11 135006516 + 17386040 17386090 L1MCb 1641 - 363 415 205026 23 0 2 27 chain 3189 chr11 135006516 + 17439703 17439738 MIR 256 - 156 191 221119 35 chain 19158 chr11 135006516 + 17445606 17445873 L1PA8 5853 + 5587 5853 129652 23 2 0 10 0 1 72 1 0 47 2 1 10 0 3 6 2 1 92 chain 64337 chr11 135006516 + 17447236 17447964 L1PA7 6471 - 3 731 50868 728 chain 7803 chr11 135006516 + 17504471 17504625 L1MA3 4352 - 0 151 172291 14 18 14 8 1 0 20 0 9 5 1 0 22 2 0 25 4 0 34 chain 9738 chr11 135006516 + 17508311 17508523 L1MB3 1562 + 1366 1551 161896 47 46 20 5 2 0 8 0 1 21 1 0 54 13 14 15 chain 12691 chr11 135006516 + 17509643 17509819 L1MA2 4263 - 333 505 149481 79 1 0 45 13 10 38 chain 16697 chr11 135006516 + 17587739 17587982 MER2 342 - 91 333 136412 90 1 0 40 5 8 31 5 0 11 0 2 60 chain 8517 chr11 135006516 + 17644259 17644677 L1MA2 4263 - 205 631 48223 93 11 9 53 0 7 69 3 4 17 11 10 123 12 15 26 chain 81570 chr11 135006516 + 17646006 17647138 L1PA13 3608 - 62 1163 42942 9 3 0 12 7 1 6 1 0 16 6 1 10 6 3 22 1 0 18 9 5 47 2 0 5 1 0 35 3 0 22 1 0 61 2 0 114 1 0 31 1 0 365 0 2 136 3 4 176 chain 11717 chr11 135006516 + 17647138 17647713 L1MA2 4263 - 633 1203 48223 24 1 0 21 5 1 18 1 0 166 0 1 339 chain 7104 chr11 135006516 + 17723201 17723391 L1MC1 2226 - 77 240 176731 10 1 0 9 11 2 6 1 0 17 2 0 22 50 38 50 2 0 9 chain 21086 chr11 135006516 + 17750030 17750407 THE1D 372 + 0 372 123589 56 10 1 10 19 20 8 1 0 40 0 4 5 2 1 24 41 42 161 chain 27159 chr11 135006516 + 17822460 17822769 AluYk4 311 + 0 304 95729 295 5 0 9 chain 12457 chr11 135006516 + 17887871 17888058 Tigger3c 601 + 386 579 150432 123 0 1 10 24 29 30 chain 122458 chr11 135006516 + 17888608 17890162 THE1B-int 1605 - 5 1588 30233 363 5 4 115 0 6 580 6 5 70 0 25 415 chain 27769 chr11 135006516 + 17890177 17890532 THE1B 368 - 0 368 93803 200 1 0 85 10 9 15 0 15 44 chain 20623 chr11 135006516 + 17891458 17891797 THE1D 372 + 0 332 125213 13 0 2 14 1 0 19 9 0 26 4 5 87 33 34 24 1 0 108 chain 35599 chr11 135006516 + 17938476 17939109 L1PB1 5432 + 4828 5427 75416 275 17 15 20 1 0 9 1 0 9 17 11 53 2 1 16 1 0 40 112 94 20 1 0 13 1 0 18 2 0 5 chain 5783 chr11 135006516 + 17953652 17953721 L1PA5 6144 + 6069 6139 187338 56 0 1 13 chain 6048 chr11 135006516 + 17962794 17962914 L1MB2 1706 - 12 117 184820 52 21 9 12 1 0 10 1 0 13 1 0 9 chain 18721 chr11 135006516 + 17986600 17986925 THE1D 372 + 0 336 130901 15 0 2 39 17 8 64 0 4 48 43 58 45 2 1 52 chain 4500 chr11 135006516 + 18007466 18007517 MER20 218 - 70 121 200777 51 chain 23777 chr11 135006516 + 18015769 18016046 AluY 311 + 30 306 111607 79 1 0 197 chain 22275 chr11 135006516 + 18065698 18065977 AluSc 308 + 11 288 119017 17 1 0 226 5 4 30 chain 130965 chr11 135006516 + 18069140 18070913 L1MA2 4263 + 2326 4114 27869 110 0 1 207 0 6 33 0 1 89 11 10 125 4 5 297 0 3 371 4 1 77 1 0 61 4 27 59 3 0 6 5 0 106 0 1 34 11 9 40 0 2 40 19 12 46 1 0 9 chain 3047 chr11 135006516 + 18074691 18074723 U2 167 + 0 32 224050 32 chain 131867 chr11 135006516 + 18078818 18080327 L1PA3long 6157 - 972 2444 27663 427 23 5 808 0 1 75 20 0 156 chain 88146 chr11 135006516 + 18080327 18081297 L1PA3long 6157 + 5186 6157 40145 821 0 1 149 chain 25259 chr11 135006516 + 18129336 18129624 AluYf4 310 - 26 310 103425 152 4 0 132 chain 19617 chr11 135006516 + 18140689 18141305 MER41C 542 + 224 522 128342 42 345 8 38 0 21 9 1 0 172 1 0 8 chain 138810 chr11 135006516 + 18141977 18143564 SVA_D 2077 + 0 2077 26350 27 3 0 10 3 5 11 0 8 328 1 0 7 1 0 8 0 1 503 0 185 150 0 302 524 3 0 8 chain 369333 chr11 135006516 + 18143754 18148043 L1PA6 6164 - 2 4308 11111 142 1 16 171 2 3 1877 1 2 761 0 1 409 1 2 451 2 0 67 2 1 208 1 2 193 chain 50168 chr11 135006516 + 18148053 18148622 L1PA4 6152 - 9 583 58893 6 0 4 131 0 1 432 chain 17406 chr11 135006516 + 18178681 18178880 L1PA5 6144 - 212 410 134486 47 1 0 151 chain 15089 chr11 135006516 + 18178880 18179063 L1PA5 6144 + 5955 6140 141062 39 1 3 143 chain 536856 chr11 135006516 + 18179346 18185487 L1PA4 6152 + 10 6152 3332 2237 1 0 71 2 0 1622 0 1 1357 0 4 707 1 0 143 chain 9713 chr11 135006516 + 18212000 18212117 AluSq 315 + 177 295 162014 51 0 1 66 chain 17644 chr11 135006516 + 18213543 18213942 L1PB1 5432 + 5020 5426 133857 41 47 84 12 13 5 5 0 2 50 1 0 17 1 0 43 2 1 16 3 0 5 16 7 18 9 6 14 2 0 24 1 0 22 1 0 12 1 0 13 1 0 9 chain 23514 chr11 135006516 + 18219285 18219611 THE1B 368 + 20 356 113050 24 5 20 108 1 0 20 2 0 102 1 0 28 7 6 28 chain 2909 chr11 135006516 + 18221964 18222009 L1MD2 1676 - 384 431 226889 19 1 3 25 chain 125664 chr11 135006516 + 18222381 18223957 THE1B-int 1605 - 0 1605 29198 267 1 0 127 0 1 198 3 4 330 0 3 219 1 26 430 chain 19312 chr11 135006516 + 18238310 18238552 L1M1 2793 + 1268 1509 129210 5 2 0 89 0 1 146 chain 20055 chr11 135006516 + 18247406 18247695 L1PA16 3655 + 2780 3084 126956 123 1 0 6 0 15 59 3 2 69 13 15 15 chain 6076 chr11 135006516 + 18266093 18266173 LTR41 747 + 665 745 184605 80 chain 25586 chr11 135006516 + 18290102 18290405 AluSg 306 + 4 306 101797 101 1 0 201 chain 108289 chr11 135006516 + 18296788 18298204 LTR12C 1709 - 0 1709 34618 73 47 50 16 0 2 140 0 1 136 9 10 53 20 13 82 0 129 90 0 2 64 0 118 349 0 43 67 0 1 270 chain 11441 chr11 135006516 + 18316283 18316457 MER30 238 - 4 199 154529 10 0 1 24 0 3 59 2 0 11 4 0 7 3 26 54 chain 7393 chr11 135006516 + 18321388 18321605 L1MA5A 2387 + 2110 2291 174812 45 2 0 10 107 73 53 chain 19321 chr11 135006516 + 18325763 18326051 AluSp 311 - 11 300 129176 28 11 12 105 2 0 5 10 12 6 1 0 40 0 1 80 chain 6388 chr11 135006516 + 18337205 18337327 LTR48 738 + 196 335 182113 23 10 11 31 15 31 43 chain 9471 chr11 135006516 + 18338305 18339157 LTR56 451 - 182 450 163211 60 60 71 41 636 42 42 1 0 12 chain 28354 chr11 135006516 + 18351858 18352244 MER83 447 - 48 440 91746 145 11 18 85 4 3 141 chain 24886 chr11 135006516 + 18367343 18367636 AluYf4 310 - 17 310 105435 293 chain 6285 chr11 135006516 + 18430098 18430175 MER30B 195 - 3 80 182922 77 chain 95247 chr11 135006516 + 18453398 18454649 L1PBa 3878 - 1072 2316 38022 98 0 3 115 0 1 131 0 1 132 0 2 245 0 1 262 0 11 173 26 6 6 4 0 6 2 0 51 chain 22713 chr11 135006516 + 18456763 18457176 MSTA 426 + 0 426 117016 97 51 59 44 0 1 4 57 61 160 chain 26311 chr11 135006516 + 18458028 18458332 AluSp 311 - 7 311 98780 304 chain 39972 chr11 135006516 + 18480616 18481147 MLT2A2 560 + 0 547 69360 15 0 4 95 0 2 53 12 11 219 3 14 134 chain 12208 chr11 135006516 + 18487531 18487718 L1PA16 3655 - 67 257 151386 11 3 0 33 7 6 20 0 1 10 0 3 83 2 5 18 chain 10851 chr11 135006516 + 18505058 18505189 THE1A 353 + 222 353 156777 131 chain 59346 chr11 135006516 + 18508036 18508681 L1PA4 6152 + 5362 6006 53197 530 1 0 114 chain 11188 chr11 135006516 + 18508681 18508811 L1PA4 6152 + 6013 6143 155473 130 chain 24062 chr11 135006516 + 18569973 18570265 AluSp 311 - 12 303 109970 43 1 0 248 chain 6320 chr11 135006516 + 18645402 18645569 L1MB7 1623 - 111 253 182637 13 1 0 5 8 4 11 1 0 27 49 30 52 chain 21177 chr11 135006516 + 18662504 18662800 MER4E1 777 - 14 292 123286 205 38 20 53 chain 32430 chr11 135006516 + 18664800 18665220 LTR7B 505 + 0 495 80153 108 0 10 66 3 66 28 0 2 85 1 0 23 0 1 106 chain 264042 chr11 135006516 + 18665276 18668839 HERVH-int 3825 + 45 3825 15482 12 7 10 8 0 1 257 1 0 66 22 21 26 75 39 10 1 2 18 0 1 6 5 273 376 1 4 48 15 0 201 1 0 7 9 0 49 0 5 50 6 11 47 9 10 4 1 0 164 0 1 1028 11 0 206 18 19 245 13 14 221 0 1 319 chain 31728 chr11 135006516 + 18670590 18671011 LTR7B 505 + 0 495 81278 108 0 10 57 0 38 12 0 25 28 0 2 85 1 0 23 0 1 52 14 13 41 chain 533341 chr11 135006516 + 18680344 18686459 L1PA5 6144 + 0 6142 3801 691 0 15 97 11 28 339 9 0 445 0 1 1560 1 0 97 3 4 1124 4 0 745 0 5 876 0 1 91 0 1 22 chain 3143 chr11 135006516 + 18688178 18688214 MER41B 635 - 90 126 222115 36 chain 36006 chr11 135006516 + 18688693 18689158 LTR2 463 + 0 463 74886 71 9 0 56 0 3 139 3 4 81 0 1 7 1 0 8 5 7 11 0 1 74 chain 23676 chr11 135006516 + 18690884 18691192 LTR8 732 - 150 454 112173 240 10 6 58 chain 13187 chr11 135006516 + 18701214 18701394 MER50 708 + 498 680 147518 11 10 12 159 chain 14623 chr11 135006516 + 18703572 18703774 MER41B 635 + 0 191 142513 125 15 4 62 chain 41774 chr11 135006516 + 18708534 18712812 MER41-int 2638 + 632 2636 66935 42 1 0 6 0 3 9 2 0 51 2 1 17 3249 1291 40 5 6 75 314 0 18 11 18 11 20 10 222 0 1 183 chain 5959 chr11 135006516 + 18714331 18714398 MER41B 635 + 511 578 185604 67 chain 4011 chr11 135006516 + 18787788 18787830 MIRb 242 - 133 175 207217 42 chain 14738 chr11 135006516 + 18811206 18811485 L1PB1 5432 + 5170 5427 142144 50 2 1 16 1 0 43 1 0 16 1 0 4 18 8 18 3 1 4 1 0 39 1 0 21 7 6 7 1 0 18 2 0 5 chain 8362 chr11 135006516 + 18821819 18821933 L1PB4 2604 + 2439 2549 169065 15 4 0 95 chain 5461 chr11 135006516 + 18829550 18829653 L1MA7 2200 - 1475 1581 190399 60 29 32 14 chain 51686 chr11 135006516 + 18831238 18831806 L1PA3long 6157 - 15 583 57828 568 chain 7086 chr11 135006516 + 18839128 18839275 L1PA15 4387 - 46 178 176854 12 13 0 12 2 0 35 15 16 49 1 0 8 chain 81212 chr11 135006516 + 18840551 18841591 HERV17-int 4347 - 466 4311 43081 145 0 1673 275 0 7 166 5 705 125 20 450 64 1 0 132 1 0 27 2 0 34 1 0 42 chain 38069 chr11 135006516 + 18842510 18843052 HERVK14-int 1672 - 1106 1667 72031 87 0 9 136 1 0 11 13 23 28 0 4 130 0 2 8 5 7 33 1 0 47 9 4 7 1 0 25 chain 100174 chr11 135006516 + 18844609 18845978 L1PA15 4387 - 506 1895 36727 12 0 4 28 0 7 2 11 0 12 1 13 118 0 5 6 0 1 4 1 0 28 0 1 259 0 3 5 15 12 189 6 5 17 0 2 103 1 3 108 6 5 92 1 0 131 0 1 213 chain 283281 chr11 135006516 + 18846031 18850328 L1PB1 5432 - 5 4018 14450 5 2 0 29 1 0 23 1 0 24 2 0 5 10 9 26 22 15 10 1 0 45 1 0 15 4 2 41 48 40 22 15 13 126 8 18 115 3 2 27 12 11 12 13 1 158 1 6 180 1 2 16 8 16 69 20 25 107 0 1 479 5 8 480 0 1 90 19 19 69 16 30 106 23 25 28 5 1 35 0 26 313 0 1 530 0 3 132 2 1 9 11 0 121 2 0 187 304 0 103 chain 30709 chr11 135006516 + 18852844 18853488 L1PB1 5432 + 4745 5418 83018 22 0 1 44 13 16 96 0 60 114 67 4 11 4 0 10 22 73 22 2 1 17 1 0 42 5 4 14 2 0 6 13 6 18 13 10 10 2 0 24 1 0 14 0 1 6 1 0 13 1 0 14 chain 291282 chr11 135006516 + 18859939 18864107 L1PA10 4194 + 245 4150 13942 5 1 0 19 7 5 13 1 0 7 112 77 9 1 0 15 9 2 8 1 0 78 4 1 392 1 0 64 13 18 233 3 5 20 0 1 543 1 0 413 0 2 51 0 4 16 3 8 247 242 1 23 6 7 143 1 5 29 0 1 23 0 1 79 6 5 16 8 12 761 0 5 504 3 0 34 chain 20839 chr11 135006516 + 18868731 18869093 THE1D 372 + 0 357 124492 13 0 2 17 1 0 19 9 0 23 11 12 53 0 1 24 44 46 15 1 0 132 chain 77846 chr11 135006516 + 18877708 18878573 L1PA4 6152 + 5281 6143 44597 19 0 1 498 4 0 344 chain 5269 chr11 135006516 + 18878717 18879154 L1PA15-16 3068 + 2480 2707 192330 9 1 0 8 1 0 7 2 0 4 0 1 41 24 21 8 1 0 4 1 0 15 293 91 18 chain 132899 chr11 135006516 + 18890660 18892158 L1PA4 6152 + 4639 6141 27444 665 0 4 833 chain 40321 chr11 135006516 + 18893676 18894396 L1PB1 5432 - 12 625 68851 16 1 0 13 1 0 21 91 0 24 2 0 14 1 0 5 2 0 30 14 1 16 1 0 43 1 0 16 2 1 53 2 0 8 6 2 10 1 0 13 1 0 20 1 0 9 2 5 35 0 1 213 7 19 25 chain 51527 chr11 135006516 + 18903755 18904415 L1PA8A 6298 - 7 673 57888 6 0 1 87 6 9 5 2 0 18 2 1 125 3 8 406 chain 72185 chr11 135006516 + 18904415 18905290 L1PA8A 6298 + 4735 5617 47383 189 0 4 244 1 0 20 0 1 289 6 9 126 chain 483710 chr11 135006516 + 18913468 18919541 L1PA7 6471 - 326 6471 7599 243 0 7 36 0 3 53 0 4 125 0 3 331 17 9 376 1 0 173 15 1 14 17 12 273 0 11 635 0 1 211 0 1 94 1 0 7 0 1 71 9 8 342 10 14 454 8 2 230 0 1 145 4 0 91 0 1 604 6 0 60 0 3 49 0 4 399 0 1 420 4 75 133 1 2 149 5 6 257 chain 320667 chr11 135006516 + 18919549 18925140 L1PA8 5853 + 1565 5853 12570 452 2 1 117 2 1 138 10 14 396 0 1 90 0 1 20 37 9 402 0 4 158 4 5 103 6 7 172 965 0 420 0 1 53 1 48 29 1 2 123 5 0 166 48 0 127 0 1 314 0 3 39 316 0 28 2 0 28 5 1 28 14 15 35 52 57 358 0 1 31 1 0 44 2 0 46 0 1 22 3 2 63 1 0 20 1 0 91 chain 106394 chr11 135006516 + 18937907 18939093 L1PA3long 6157 - 0 1188 35155 972 0 6 18 1 0 50 0 1 14 4 0 127 chain 431342 chr11 135006516 + 18943058 18948913 L1PA8 5853 + 111 5853 9288 191 18 6 195 1 0 215 6 0 7 5 11 471 4 0 6 6 10 318 11 9 156 10 10 159 1 0 86 7 9 54 30 3 47 5 6 7 0 1 178 0 6 103 3 4 267 65 0 242 36 20 87 0 2 271 0 1 120 4 1 4 0 1 295 0 1 72 1 0 196 1 2 30 0 2 360 3 7 141 2 0 508 2 0 144 27 32 239 9 7 132 2 1 45 2 0 69 2 1 12 1 0 49 2 1 19 1 0 93 chain 36978 chr11 135006516 + 18970352 18970849 L1PA8 5853 + 5177 5671 73540 386 11 10 34 6 4 60 chain 3496 chr11 135006516 + 18970867 18970920 L1PA8 5853 + 5690 5740 215414 10 3 0 40 chain 9065 chr11 135006516 + 18970922 18971035 L1PA8 5853 + 5741 5853 165236 19 1 0 93 chain 27769 chr11 135006516 + 18999409 19000000 L1PB1 5432 - 10 481 93801 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 14 23 12 4 1 0 15 1 0 10 0 1 34 1 0 15 2 1 52 17 11 11 1 0 8 1 0 24 107 16 60 0 1 86 chain 6486 chr11 135006516 + 19006457 19006535 LTR3B_ 500 + 422 500 181356 78 chain 34671 chr11 135006516 + 19009006 19009449 LTR10F 562 - 0 562 76663 258 0 2 67 1 116 78 1 3 38 chain 453909 chr11 135006516 + 19010289 19015647 L1PA6 6164 - 2 6164 8616 8 0 7 127 6 5 11 1 2 598 1 0 109 0 3 30 0 13 77 0 5 30 1 0 95 1 0 1129 0 2 207 0 1 28 2 1 167 0 4 235 0 3 86 0 1 6 0 18 181 1 4 11 0 1 278 1 0 297 0 1 56 10 8 318 0 13 898 0 1 262 0 735 90 chain 15158 chr11 135006516 + 19016374 19016664 L1MA1 4479 - 289 558 140882 19 49 35 29 2 0 29 1 0 123 6 3 5 1 0 26 chain 75281 chr11 135006516 + 19024432 19025476 MER11C 1089 - 26 1089 45879 144 1 0 53 0 1 127 0 1 38 1 0 4 1 5 91 66 66 165 1 0 47 0 4 41 22 34 242 chain 343509 chr11 135006516 + 19029154 19033938 L1PB1 5432 - 12 4780 11796 15 2 1 13 1 0 21 1 0 24 2 0 11 11 8 10 22 15 6 2 0 15 1 0 44 1 0 18 3 2 10 1 0 40 2 0 9 16 11 13 1 0 20 4 0 7 3 7 47 16 16 53 2 1 353 6 5 16 8 13 53 10 12 255 0 2 73 0 4 101 6 5 17 0 5 331 5 2 10 0 1 168 22 24 46 0 3 246 0 1 374 0 1 20 1 0 97 0 1 75 0 1 175 2 0 217 0 3 572 3 9 278 0 1 12 1 0 4 0 10 3 26 0 94 11 10 49 1 3 29 5 6 53 6 0 153 0 1 184 0 1 33 0 3 113 chain 14816 chr11 135006516 + 19052064 19052326 L1PB1 5432 - 19 260 141892 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 12 5 7 3 0 15 1 0 44 1 0 16 2 1 48 chain 110714 chr11 135006516 + 19053229 19054490 L1PA5 6144 - 9 1274 34024 147 0 1 713 0 3 401 chain 277321 chr11 135006516 + 19062378 19066268 L1PA10 4194 + 306 4161 14789 4 1 0 25 2 0 12 1 0 7 1 0 9 2 1 10 1 0 5 38 30 50 0 1 24 2 0 396 1 0 256 0 1 19 1 0 50 0 1 153 1 2 114 2 1 170 10 12 93 10 4 6 8 0 70 16 20 163 0 4 168 2 0 5 11 13 220 0 1 197 0 1 6 0 4 14 0 1 25 16 1 22 0 3 39 1 0 28 2 4 5 2 0 235 10 11 104 24 15 227 1 2 128 5 6 182 13 12 7 0 1 356 1 0 55 9 8 25 1 0 11 chain 38399 chr11 135006516 + 19072327 19072931 L1PA14 3548 + 2870 3456 71573 68 3 1 14 2 0 47 2 0 5 2 0 107 12 7 12 2 0 6 1 0 84 1 0 107 17 13 38 4 2 12 5 3 15 0 7 38 chain 338108 chr11 135006516 + 19084319 19088345 L1PA7 6471 - 2 4015 11950 10 3 0 326 1 0 433 0 2 348 0 1 247 0 6 5 6 0 1991 0 4 454 12 1 34 5 0 151 chain 41038 chr11 135006516 + 19109924 19110542 MER41B 635 - 0 635 67845 68 13 18 38 3 4 22 30 29 112 0 2 75 0 10 123 20 21 20 1 0 93 chain 28060 chr11 135006516 + 19120339 19120644 AluYb8 318 - 0 318 92788 124 0 13 181 chain 12446 chr11 135006516 + 19121352 19121499 MER107 203 + 0 147 150476 147 chain 34491 chr11 135006516 + 19136084 19136477 L1PA5 6144 - 0 396 76921 87 0 2 242 1 2 63 chain 56130 chr11 135006516 + 19149242 19150070 L1PREC2 3366 - 403 1208 55050 11 3 0 30 2 0 8 60 47 14 7 3 44 1 0 54 2 0 42 1 0 119 1 0 4 0 1 155 3 6 267 chain 43065 chr11 135006516 + 19155897 19156412 L1PA7 6471 + 5951 6468 65342 4 1 0 5 0 2 4 0 1 501 chain 544955 chr11 135006516 + 19156611 19162626 L1PA3long 6157 + 4 6157 2078 149 0 1 227 1 0 54 0 1 340 0 128 700 0 4 379 0 3 772 0 6 409 1 0 2867 0 1 92 1 0 6 3 0 14 chain 33621 chr11 135006516 + 19225141 19225527 L1PA4 6152 - 750 1134 78208 101 2 0 90 2 1 86 0 1 105 chain 64594 chr11 135006516 + 19225527 19226257 L1PA4 6152 + 5409 6143 50751 81 0 3 463 0 1 12 0 1 39 1 0 134 chain 14863 chr11 135006516 + 19226304 19226489 L1PA8A 6298 + 6109 6291 141743 79 4 0 42 0 1 60 chain 14614 chr11 135006516 + 19241131 19241319 MER107 203 - 2 196 142540 25 1 7 162 chain 29102 chr11 135006516 + 19282510 19282812 AluYb8 318 + 0 302 88544 302 chain 270692 chr11 135006516 + 19292245 19295545 L1PA8 5853 + 2542 5853 15153 346 1 0 108 0 1 995 0 2 65 0 4 44 0 5 442 0 1 120 1 0 330 1 4 422 1 3 86 0 1 43 12 11 33 2 0 70 2 1 14 2 0 6 14 16 22 9 8 15 1 0 93 chain 23900 chr11 135006516 + 19315898 19316252 THE1D 372 - 0 372 110912 148 16 18 18 18 28 28 0 4 110 0 2 16 chain 23678 chr11 135006516 + 19335399 19335646 AluYa5 310 - 21 268 112167 247 chain 5368 chr11 135006516 + 19337471 19337538 LTR29 598 - 66 133 191334 67 chain 23080 chr11 135006516 + 19340590 19340993 MSTA 426 + 31 426 115241 51 11 0 47 2 0 12 26 29 32 5 6 13 0 1 41 5 0 35 16 21 107 chain 57551 chr11 135006516 + 19345663 19346496 L1PA13 3608 + 2660 3488 54210 347 0 4 6 13 12 131 1 0 19 5 8 34 1 3 22 1 0 27 2 0 61 1 0 57 1 0 3 2 0 39 19 15 18 1 0 22 chain 34942 chr11 135006516 + 19384532 19384953 L1PA7 6471 - 6 424 76275 6 3 0 412 chain 8274 chr11 135006516 + 19423438 19423528 5S 121 - 31 121 169546 90 chain 492524 chr11 135006516 + 19433666 19439654 L1PA7 6471 + 495 6448 7243 183 0 1 38 1 2 172 14 13 694 3 6 653 6 10 15 11 13 225 0 2 115 1 0 4 28 4 15 1 0 884 1 2 195 7 8 1206 1 0 147 0 1 511 0 1 432 17 0 20 0 11 40 19 0 124 0 1 205 chain 23522 chr11 135006516 + 19482078 19482343 L1PA5 6144 + 5866 6142 113004 171 0 11 94 chain 3998 chr11 135006516 + 19528412 19528460 MER45A 178 - 50 98 207424 48 chain 3431 chr11 135006516 + 19554826 19554868 MER20 218 - 84 126 216550 42 chain 28793 chr11 135006516 + 19555253 19555552 AluYa5 310 - 11 310 89935 299 chain 14899 chr11 135006516 + 19567217 19567424 MER30 238 + 0 238 141634 16 0 18 74 5 21 62 3 0 47 chain 539081 chr11 135006516 + 19602918 19609066 L1PA4 6152 - 0 6146 2973 126 0 3 21 0 1 56 0 1 251 1 2 999 11 0 912 0 1 270 1 0 1366 0 1 315 1 0 429 0 1 643 0 1 601 0 1 145 chain 23137 chr11 135006516 + 19626248 19626605 THE1B 368 + 0 368 114957 68 22 25 26 12 13 40 2 1 128 2 0 8 0 10 49 chain 29734 chr11 135006516 + 19632509 19632862 THE1A 353 - 0 353 85716 353 chain 126218 chr11 135006516 + 19632862 19634429 THE1A-int 1579 - 0 1579 29026 43 2 0 38 0 5 181 0 5 317 24 25 855 0 3 107 chain 25607 chr11 135006516 + 19634429 19634782 THE1A 353 - 0 345 101692 243 1 0 13 1 0 8 12 6 75 chain 523959 chr11 135006516 + 19640452 19646439 L1PA5 6144 - 146 6141 4770 364 1 0 746 0 1 1260 0 6 1312 8 0 1219 3 0 405 0 1 178 1 13 490 chain 26056 chr11 135006516 + 19652654 19652957 L1PA3long 6157 - 0 303 99805 303 chain 65773 chr11 135006516 + 19664721 19665453 L1PA4 6152 - 9 742 50206 92 0 1 640 chain 173444 chr11 135006516 + 19675483 19677440 L1PA4 6152 + 4185 6143 21658 710 0 1 921 1 2 91 1 0 233 chain 6214 chr11 135006516 + 19732059 19732185 MER5A 189 - 46 189 183456 58 40 57 28 chain 2421 chr11 135006516 + 19746615 19746786 MIR 256 - 15 181 234036 7 4 0 15 120 119 25 chain 26804 chr11 135006516 + 19761825 19762123 SVA_A 1864 + 1565 1864 96969 177 0 1 121 chain 36189 chr11 135006516 + 19768440 19768851 L1PA4 6152 - 1 411 74644 133 2 1 276 chain 3877 chr11 135006516 + 19786784 19786828 MER58B 340 - 8 52 209203 44 chain 3449 chr11 135006516 + 19845302 19845346 L1PA7 6471 + 6296 6340 216220 44 chain 10307 chr11 135006516 + 19845346 19845470 L1PA7 6471 + 6343 6469 159101 113 0 2 11 chain 29082 chr11 135006516 + 19857821 19858127 AluYb8 318 + 0 306 88629 306 chain 5714 chr11 135006516 + 19872686 19872762 MIR 256 - 119 195 187976 25 0 2 8 2 0 41 chain 164619 chr11 135006516 + 19880687 19882592 SVA_D 2077 - 0 2077 22724 676 15 14 167 47 0 133 0 184 142 3 0 10 23 26 670 0 36 19 chain 3615 chr11 135006516 + 19881545 19881592 SVA_D 2077 - 1038 1085 153829 47 chain 53268 chr11 135006516 + 19918328 19918934 L1PA4 6152 + 5541 6152 56846 88 1 0 376 1 2 134 0 5 6 chain 3237 chr11 135006516 + 19927926 19928011 MLT1H 522 - 440 522 220294 28 37 34 20 chain 29344 chr11 135006516 + 19936083 19936389 AluYb8 318 - 12 318 87327 306 chain 21567 chr11 135006516 + 20023163 20023411 L1PA5 6144 + 5896 6144 121892 248 chain 2611 chr11 135006516 + 20088979 20089020 MER53 195 - 64 107 231537 21 2 4 18 chain 324304 chr11 135006516 + 20092504 20096486 L1PA7 6471 - 2 4003 12427 191 9 1 4 0 1 140 0 1 38 1 2 125 2 0 234 0 28 111 18 8 81 0 1 29 0 5 25 0 1 398 2 6 90 3 2 700 4 5 640 5 4 45 0 4 902 12 6 173 chain 24997 chr11 135006516 + 20196100 20196478 THE1C 375 + 0 375 104808 39 0 1 102 12 16 20 44 37 135 1 0 25 chain 3731 chr11 135006516 + 20202971 20203013 MER20 218 + 36 78 211440 42 chain 3811 chr11 135006516 + 20221808 20221848 tRNA-Cys-TGY 72 - 29 69 210223 40 chain 44965 chr11 135006516 + 20222044 20222597 MER41A 554 + 0 554 63099 282 7 8 264 chain 12071 chr11 135006516 + 20228099 20228253 MER41-int 2638 + 2484 2638 151900 154 chain 10259 chr11 135006516 + 20242791 20242907 L1PA5 6144 - 18 134 159326 116 chain 20690 chr11 135006516 + 20250556 20250792 L1PA7 6471 - 5 241 125004 236 chain 44249 chr11 135006516 + 20257909 20258403 L1PA5 6144 + 5644 6138 63881 494 chain 7324 chr11 135006516 + 20312919 20312999 L1PA5 6144 - 209 289 175274 80 chain 68497 chr11 135006516 + 20345992 20347126 L1PA7 6471 - 1 803 49040 350 4 5 121 333 0 326 chain 19538 chr11 135006516 + 20347132 20347445 MER65A 464 - 126 464 128546 20 1 0 6 1 0 123 2 0 42 0 15 8 6 3 14 3 6 45 11 25 31 chain 477297 chr11 135006516 + 20364020 20370287 L1PA8A 6298 + 42 6290 7821 14 1 0 11 9 4 6 6 0 19 46 34 17 2 1 9 2 1 18 1 0 13 2 0 15 2 0 5 1 0 12 2 1 7 1 0 9 1 0 6 1 0 8 10 5 9 2 0 31 42 33 78 2 0 14 16 13 27 26 2 42 2 0 4 0 1 579 0 5 16 0 3 20 0 1 6 12 9 473 0 6 91 0 1 363 2 3 58 1 2 66 0 1 277 0 30 237 0 4 127 0 1 75 0 4 89 1 11 280 1 3 34 7 3 476 35 19 567 0 1 34 3 4 193 0 4 141 0 5 126 0 1 527 0 3 244 0 1 351 9 11 150 2 0 43 chain 23691 chr11 135006516 + 20377486 20377831 THE1C 375 - 29 375 112078 129 30 24 11 0 3 36 1 5 138 chain 26358 chr11 135006516 + 20382520 20382859 MER11A 1151 + 0 435 98584 55 0 99 76 1 0 64 10 6 26 0 2 107 chain 20521 chr11 135006516 + 20407714 20407959 AluSp 311 + 57 295 125562 173 1 0 57 6 0 8 chain 17900 chr11 135006516 + 20456077 20456521 L1PREC2 3366 - 329 726 133102 13 4 18 35 23 9 10 4 1 29 92 55 13 3 0 5 2 1 41 14 13 42 7 5 107 chain 207079 chr11 135006516 + 20492303 20495449 L1PA11 4918 - 289 4905 18711 18 129 105 4 0 1 13 2 1 14 3 1 65 3 0 12 1 0 8 1 12 39 0 3 80 0 3 64 0 1 251 5 9 44 10 12 5 2 0 178 0 11 10 1 2 22 1 0 205 0 4 79 4 3 14 1 0 343 1 4 118 1 2 44 0 25 77 41 0 60 4 5 27 7 0 92 28 0 139 0 4 47 23 24 30 1 8 10 0 1 18 1 5 323 1 0 28 0 1 42 0 21 23 1 2 46 7 1477 74 1 0 3 2 0 33 1 0 14 13 0 38 2 0 14 1 0 7 0 2 20 3 1 4 1 0 15 0 23 29 chain 22766 chr11 135006516 + 20535326 20535592 L1PA5 6144 + 5878 6144 116747 266 chain 20071 chr11 135006516 + 20556354 20556705 THE1B 368 - 0 368 126917 56 24 26 29 39 49 6 0 1 32 1 0 129 4 9 31 chain 72872 chr11 135006516 + 20559914 20561006 MER11A 1151 + 0 1151 47084 79 0 8 135 7 6 45 0 5 16 0 11 34 35 0 193 0 12 129 15 18 11 3 4 39 0 4 67 0 2 16 2 60 73 0 1 23 8 7 30 9 1 56 7 6 21 1 0 34 0 1 4 chain 164644 chr11 135006516 + 20569322 20571175 SVA_E 1901 + 1 1901 22717 152 2 0 197 2 1 466 1 0 106 0 46 5 1 0 34 1 0 87 1 0 33 40 0 93 0 1 7 0 49 615 2 0 8 chain 3364 chr11 135006516 + 20570410 20570450 SVA_E 1901 + 953 1002 119711 6 4 1 8 0 12 22 chain 114247 chr11 135006516 + 20576647 20578150 THE1C-int 1605 - 9 1605 33012 251 21 29 38 0 1 346 0 10 105 3 11 260 1 2 82 9 16 41 0 1 226 0 54 77 2 3 26 3 5 12 chain 28776 chr11 135006516 + 20578150 20578522 THE1C 375 - 0 375 89993 144 0 5 42 1 2 62 3 0 120 chain 8501 chr11 135006516 + 20581307 20581400 L1PA8 5853 + 5760 5853 168284 93 chain 21266 chr11 135006516 + 20587840 20588098 MLT2A2 560 + 49 307 122977 258 chain 39323 chr11 135006516 + 20589420 20589850 LTR7Y 441 + 0 431 70294 196 0 1 234 chain 290208 chr11 135006516 + 20589861 20593313 HERVH-int 3825 + 1 3760 14007 483 0 56 30 1 0 10 1 0 24 28 0 14 1 0 2 0 18 12 6 26 18 4 3 57 1 2 8 0 2 12 0 3 890 0 1 13 4 31 658 0 1 745 8 218 422 chain 40735 chr11 135006516 + 20593760 20594201 LTR7Y 441 + 0 441 68265 441 chain 24560 chr11 135006516 + 20594461 20594772 MLT2A2 560 - 253 560 107196 225 7 3 79 chain 314156 chr11 135006516 + 20596905 20600468 L1PA5 6144 + 2565 6143 12845 609 0 8 492 0 3 667 0 4 202 0 1 913 0 3 283 0 1 109 1 4 21 1 0 121 7 0 137 chain 22440 chr11 135006516 + 20632480 20633216 LTR26B 539 + 14 479 118300 40 1 2 16 11 10 10 27 32 78 0 8 48 320 1 30 3 4 46 6 41 57 17 16 26 chain 5094 chr11 135006516 + 20635382 20635450 MER20 218 - 43 108 194144 46 4 1 18 chain 18235 chr11 135006516 + 20707952 20708333 MER57B2 428 - 0 428 132247 107 24 26 42 4 0 20 71 114 24 1 0 37 17 24 34 chain 450993 chr11 135006516 + 20710833 20715817 L1PA3long 6157 - 0 4989 8738 849 0 4 2133 2 1 1211 0 1 608 0 1 181 chain 4796 chr11 135006516 + 20718544 20718604 MER57B2 428 - 307 369 197406 55 0 2 5 chain 34955 chr11 135006516 + 20720200 20721578 L1PB1 5432 - 2 706 76255 4 1 0 4 1 0 21 1 0 9 1 0 22 1 0 20 61 46 9 3 0 15 60 63 48 722 65 117 0 3 60 0 1 85 6 5 107 chain 506838 chr11 135006516 + 20722104 20730018 L1PA5 6144 - 48 6144 6410 862 13 14 598 1 0 89 6 7 636 0 1 237 0 7 46 1 0 162 0 3 264 1 0 8 2 0 1323 0 5 2 1878 0 265 1 13 111 0 5 269 9 0 430 1 25 419 0 1 159 1 15 120 chain 163987 chr11 135006516 + 20726360 20728221 L1PA4 6152 + 4292 6151 22808 28 1 0 421 2 0 901 1 0 125 1 0 229 2 0 136 0 5 14 chain 3167 chr11 135006516 + 20739715 20739869 MER3 215 + 8 86 221600 38 102 26 14 chain 107173 chr11 135006516 + 20748147 20749377 L1PA6 6164 - 4 1233 34922 6 2 0 911 1 2 310 chain 7761 chr11 135006516 + 20768993 20769096 MSTC 436 - 0 107 172538 78 0 1 14 0 3 11 chain 9027 chr11 135006516 + 20770221 20770398 L1PB3 3668 - 102 254 165455 37 3 1 24 2 1 14 36 14 61 chain 37238 chr11 135006516 + 20788664 20789172 LTR12 884 - 11 884 73185 71 7 243 159 0 22 34 3 4 178 0 107 31 1 0 24 chain 8547 chr11 135006516 + 20808168 20808272 MER50 708 - 41 146 168035 21 0 1 83 chain 3552 chr11 135006516 + 20811333 20811378 MER52A 1651 - 823 867 214517 38 1 0 6 chain 32414 chr11 135006516 + 20825229 20825664 MLT2A1 477 + 2 477 80183 167 4 1 9 1 2 23 0 1 79 1 0 97 0 4 14 3 41 37 chain 37678 chr11 135006516 + 20831786 20832392 L1PB1 5432 - 8 584 72576 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 13 10 14 17 7 5 1 0 16 1 0 43 1 0 16 2 1 18 0 1 34 2 0 6 19 14 9 1 0 25 1 0 8 1 2 255 chain 29007 chr11 135006516 + 20834272 20834582 AluYf4 310 + 0 310 88953 310 chain 132033 chr11 135006516 + 20884154 20885687 SVA_C 1631 - 0 1615 27630 51 0 3 91 0 2 284 0 4 30 5 4 158 0 1 48 1 0 104 4 0 14 0 40 114 0 37 625 0 1 4 chain 8380 chr11 135006516 + 20907546 20907653 L1PA16 3655 + 3485 3589 168965 93 3 0 11 chain 17223 chr11 135006516 + 20908162 20908382 L1PA6 6164 + 5919 6158 134991 79 9 28 132 chain 257760 chr11 135006516 + 20911357 20914912 L1PA8A 6298 + 616 6291 15823 331 0 3 140 5 9 32 3 0 135 0 3 333 0 2 294 2 0 610 1 2 126 2 0 410 0 1 4 1 0 102 0 2437 95 5 4 187 329 0 75 0 4 295 0 3 38 chain 29444 chr11 135006516 + 20916535 20916846 AluYa5 310 + 0 310 86886 132 1 0 178 chain 17352 chr11 135006516 + 20917905 20918159 L1PB2 3958 - 124 381 134656 59 1 0 17 9 13 66 1 0 56 5 6 40 chain 173374 chr11 135006516 + 20918159 20920118 L1PA4 6152 + 4190 6143 21670 876 4 0 427 2 0 650 chain 73795 chr11 135006516 + 20929219 20930209 L1PA8A 6298 + 5292 6290 46617 135 3 4 58 3 11 452 4 1 237 2 3 30 13 14 53 chain 34508 chr11 135006516 + 20980703 20981354 L1PB1 5432 + 4807 5427 76892 10 2 0 119 8 2 143 0 2 20 0 3 8 1 0 20 1 0 13 1 0 11 15 9 49 22 20 41 47 35 15 24 19 24 1 0 22 0 3 5 5 4 19 1 0 4 chain 27551 chr11 135006516 + 20993345 20993742 L1PA8 5853 + 5468 5853 94501 46 2 0 5 0 2 43 1 0 45 2 0 61 26 19 51 2 1 19 1 0 93 chain 25979 chr11 135006516 + 21008903 21009275 THE1C 375 - 2 375 100102 69 1 0 114 11 9 23 12 16 142 chain 8116 chr11 135006516 + 21021733 21021822 L1PA2 6032 + 5941 6030 170403 89 chain 7578 chr11 135006516 + 21022426 21022511 5S 121 - 2 87 173676 85 chain 151892 chr11 135006516 + 21055920 21058058 L1PA13 3608 + 1333 3492 24352 31 5 17 330 8 12 59 0 3 118 0 2 43 9 12 117 12 24 141 1 0 92 0 1 17 12 14 55 2 1 46 12 4 5 3 0 9 0 1 186 0 1 145 1 0 78 1 0 154 11 12 66 1 0 31 1 0 26 0 1 56 0 6 6 10 5 13 2 0 62 2 1 55 2 1 4 1 0 70 1 0 26 chain 4767 chr11 135006516 + 21058698 21058788 MER3 215 + 64 158 197728 52 20 24 18 chain 28879 chr11 135006516 + 21074671 21074998 L1PA7 6471 - 4 331 89544 327 chain 117259 chr11 135006516 + 21115447 21117009 THE1B-int 1605 - 0 1605 32037 145 8 9 58 0 1 322 2 0 199 9 24 58 37 36 75 0 3 224 0 25 297 1 2 127 chain 37785 chr11 135006516 + 21118795 21119302 LTR10G 522 - 0 502 72435 73 4 1 95 1 0 34 1 2 190 2 1 86 1 0 20 chain 89024 chr11 135006516 + 21122391 21123399 L1PA4 6152 - 0 1014 39993 6 0 5 243 1 2 758 chain 7018 chr11 135006516 + 21212907 21213129 MLT1D 503 + 281 499 177335 34 71 65 40 44 46 33 chain 487044 chr11 135006516 + 21221197 21227262 L1PA7 6471 - 3 6112 7479 144 0 1 186 1 2 435 0 2 66 0 10 345 1 0 80 0 4 363 0 1 157 0 4 686 16 17 217 16 17 361 0 1 269 5 9 406 6 25 28 11 0 109 0 2 187 7 10 471 0 1 465 59 57 48 6 7 18 0 1 42 0 4 304 1 0 257 15 8 140 0 6 89 1 0 47 chain 20718 chr11 135006516 + 21268238 21268580 THE1B 368 - 0 368 124901 56 7 6 66 0 8 18 0 1 4 43 59 33 4 6 111 chain 539245 chr11 135006516 + 21293468 21299596 L1PA4 6152 + 6 6143 2940 433 1 0 1379 0 1 567 0 4 775 1 0 76 0 1 1109 0 4 1642 1 2 144 chain 284950 chr11 135006516 + 21311979 21315630 L1PA7 6471 + 890 6465 14355 341 0 4 267 0 1 201 11 1511 21 1 5 113 0 420 222 4 1 30 1 0 366 1 2 192 5 1 88 4 6 273 5 4 189 12 6 38 1 5 110 0 5 309 9 0 60 6 10 19 0 1 427 0 1 225 0 3 92 2 0 6 chain 85732 chr11 135006516 + 21322301 21323326 L1PA5 6144 - 2 1034 41253 7 2 0 99 0 1 34 1 8 187 0 1 682 1 0 5 0 1 7 chain 13855 chr11 135006516 + 21348729 21348890 L1PA4 6152 + 5979 6140 145050 161 chain 17289 chr11 135006516 + 21348899 21349119 THE1C 375 + 156 375 134806 192 2 1 26 chain 92758 chr11 135006516 + 21378574 21379913 L1PB2 3958 - 120 1449 38729 63 1 0 27 2 0 67 1 0 9 2 0 52 9 8 28 0 1 26 0 1 5 1 0 4 5 2 36 0 3 55 10 6 6 2 0 52 3 4 6 4 0 14 1 0 41 4 6 7 2 0 34 0 5 50 19 19 93 0 1 176 8 7 288 0 1 126 chain 37443 chr11 135006516 + 21405994 21406423 L1PA3long 6157 - 1 428 72900 4 1 0 418 1 0 5 chain 3008 chr11 135006516 + 21412657 21412694 HAL1 992 - 498 535 224875 37 chain 21027 chr11 135006516 + 21430076 21430300 L1PA3long 6157 - 862 1086 123827 224 chain 75633 chr11 135006516 + 21430301 21431137 L1PA3long 6157 + 5321 6157 45695 836 chain 22411 chr11 135006516 + 21458914 21459184 AluSp 311 - 21 291 118432 270 chain 45454 chr11 135006516 + 21475463 21475971 L1PA2 6032 - 3 498 62544 14 13 0 481 chain 9126 chr11 135006516 + 21499888 21499994 THE1D-int 1627 - 5 111 164941 106 chain 75997 chr11 135006516 + 21512676 21513512 L1PA3long 6157 - 932 1768 44921 836 chain 84467 chr11 135006516 + 21513512 21514449 L1PA3long 6157 + 5218 6155 41731 423 1 0 183 0 1 330 chain 3735 chr11 135006516 + 21517327 21517368 L1MB7 1623 - 507 548 211378 41 chain 29834 chr11 135006516 + 21518359 21518702 L1PA5 6144 - 186 527 85336 73 1 0 148 1 0 120 chain 13922 chr11 135006516 + 21518702 21518861 L1PA5 6144 + 5983 6139 144851 148 3 0 8 chain 13524 chr11 135006516 + 21538041 21538213 Tigger3a 397 - 86 258 146267 172 chain 12430 chr11 135006516 + 21547143 21547357 THE1B 368 - 15 233 150531 110 39 45 25 7 5 33 chain 39764 chr11 135006516 + 21549052 21549602 MLT2A2 560 - 0 560 69671 69 0 1 77 3 14 184 10 9 26 13 12 168 chain 2738 chr11 135006516 + 21567387 21567416 MER5A 189 + 46 75 229637 29 chain 113594 chr11 135006516 + 21571760 21573019 L1PA3long 6157 - 873 2132 33202 1259 chain 75906 chr11 135006516 + 21573019 21573843 L1PA3long 6157 + 5333 6157 45538 824 chain 68934 chr11 135006516 + 21620103 21620867 L1PA3long 6157 - 11 778 48846 651 0 3 113 chain 209502 chr11 135006516 + 21628186 21630609 L1PA5 6144 + 3697 6131 18523 208 0 5 431 0 4 703 0 1 36 4 0 12 0 1 53 1 0 143 1 0 227 0 2 8 0 1 145 5 7 258 0 1 188 chain 116539 chr11 135006516 + 21663851 21665457 THE1B-int 1605 + 1 1600 32271 23 0 2 203 5 0 64 0 1 104 70 53 296 0 9 20 0 1 178 6 7 46 4 5 325 3 2 6 0 1 253 chain 24696 chr11 135006516 + 21681225 21681512 L1PA2 6032 - 8 295 106460 146 5 0 10 1 6 125 chain 536150 chr11 135006516 + 21690596 21696614 L1PA3long 6157 - 0 6157 3424 146 1 4 5 3 0 694 0 2 939 1 2 579 5 6 1467 0 1 170 0 1 106 0 1 1013 0 4 108 0 128 422 2 1 4 0 1 146 5 4 49 0 1 153 chain 88893 chr11 135006516 + 21707333 21708324 L1PA4 6152 + 5140 6143 40047 157 0 5 274 0 7 560 chain 278893 chr11 135006516 + 21714111 21717618 L1PA7 6471 - 10 3538 14697 152 0 1 171 0 1 56 9 14 362 1 2 80 2 1 272 1 8 326 0 1 12 0 11 892 1 2 148 17 20 5 2 0 88 0 1 31 5 0 102 1 0 179 3 1 589 chain 106456 chr11 135006516 + 21717618 21718930 L1PA7 6471 + 1609 2910 35133 264 0 1 77 16 4 385 0 1 157 1 3 140 5 1 259 0 1 8 chain 3900 chr11 135006516 + 21732697 21732747 MLT1H2 457 + 401 451 208854 50 chain 20940 chr11 135006516 + 21737260 21737511 L1PA5 6144 - 0 254 124150 43 1 4 207 chain 15438 chr11 135006516 + 21754881 21755055 L1PA5 6144 + 5955 6129 140081 174 chain 42892 chr11 135006516 + 21756602 21757094 L1PA4 6152 + 5650 6143 65549 198 3 4 291 chain 5462 chr11 135006516 + 21761029 21761184 MSTA-int 1630 - 9 163 190398 40 76 75 39 chain 4339 chr11 135006516 + 21771083 21771137 MER53 195 + 125 179 202727 54 chain 96914 chr11 135006516 + 21773986 21775221 LTR12C 1709 - 1 1702 37580 81 1 0 47 0 2 262 8 9 79 0 4 89 0 47 19 1 389 209 6 7 83 0 43 144 20 1 186 chain 7167 chr11 135006516 + 21778492 21778582 L1PA15 4387 - 2066 2156 176289 90 chain 260818 chr11 135006516 + 21812432 21815577 L1PA6 6164 - 15 3175 15650 317 0 1 226 0 1 345 0 1 223 0 1 237 0 6 8 11 6 5 1 0 11 0 1 390 0 2 15 18 0 29 8 10 183 0 2 175 5 3 54 0 18 185 0 2 191 0 1 168 7 8 133 3 4 8 0 1 189 chain 120820 chr11 135006516 + 21824715 21826298 THE1A-int 1579 - 0 1579 30752 100 1 2 217 1 0 107 9 10 611 1 0 48 2 1 216 4 0 23 1 0 146 0 1 52 2 1 27 0 2 15 chain 8542 chr11 135006516 + 21835510 21835630 HERVL18-int 2198 + 595 717 168057 31 7 8 44 0 1 38 chain 22911 chr11 135006516 + 21860585 21860846 L1PA4 6152 + 5893 6150 116056 103 4 0 154 chain 20972 chr11 135006516 + 21865923 21866277 THE1B 368 + 0 368 124024 43 14 29 59 11 14 19 6 5 27 5 3 94 2 0 13 6 7 55 chain 87098 chr11 135006516 + 21869482 21870583 L1PA7 6471 - 7 1081 40668 133 12 13 186 0 1 467 28 0 48 1 0 226 chain 119458 chr11 135006516 + 21870583 21872056 L1P3 4156 + 2661 4139 31241 26 0 1 371 1 0 35 3 7 393 0 1 52 1 5 543 1 0 12 2 0 7 2 1 24 chain 27628 chr11 135006516 + 21872609 21873048 LTR3A 482 - 44 481 94269 30 3 2 25 0 1 114 2 0 8 48 39 55 1 8 40 5 7 108 chain 28045 chr11 135006516 + 21898043 21898338 AluYa5 310 - 15 310 92840 295 chain 70561 chr11 135006516 + 21899951 21900734 L1PA4 6152 - 984 1768 47713 508 0 1 275 chain 89806 chr11 135006516 + 21900734 21901750 L1PA4 6152 + 5136 6151 39722 866 5 4 145 chain 18271 chr11 135006516 + 21963858 21964203 THE1C 375 + 0 375 132151 32 93 123 30 8 9 156 1 0 25 chain 29390 chr11 135006516 + 21964683 21964990 AluYa5 310 - 3 310 87124 307 chain 472062 chr11 135006516 + 22017394 22022638 L1PA3long 6157 - 0 5248 7969 2212 0 1 759 1 2 1466 0 1 685 0 1 121 chain 79246 chr11 135006516 + 22022638 22023528 L1PA3long 6157 + 21 913 43932 175 0 1 7 0 1 708 chain 555650 chr11 135006516 + 22037548 22043567 L1PA2 6032 - 4 6032 756 427 0 1 1370 0 4 2733 0 1 807 0 3 682 chain 464422 chr11 135006516 + 22046538 22052631 L1PA7 6471 + 5 6463 8240 191 0 1 4 12 10 15 37 43 24 134 366 62 8 18 54 35 110 144 0 21 319 0 3 594 0 1 152 1 0 383 0 2 53 0 2 55 0 1 73 0 4 479 1 0 290 8 7 7 0 1 5 1 2 19 4 5 792 0 2 589 5 6 200 0 2 504 2 1 515 0 2 25 0 1 142 2 5 5 1 0 147 chain 50256 chr11 135006516 + 22055089 22055684 L1P2 5180 - 2663 3258 58822 595 chain 23027 chr11 135006516 + 22055690 22055974 L1PA7 6471 + 6182 6467 115500 125 0 7 7 6 0 146 chain 19831 chr11 135006516 + 22086688 22086940 MLT2A2 560 + 2 258 127711 13 0 4 239 chain 8165 chr11 135006516 + 22108455 22108557 LTR54 533 + 426 529 170142 91 0 1 11 chain 13907 chr11 135006516 + 22128094 22128389 THE1B 368 + 0 353 144893 44 31 71 4 1 0 50 1 0 29 33 51 27 23 25 52 chain 18818 chr11 135006516 + 22132105 22132404 THE1B 368 - 21 368 130620 104 29 42 6 3 0 26 1 0 29 0 4 61 0 34 14 1 2 25 chain 101657 chr11 135006516 + 22133714 22134910 L1PA6 6164 + 4963 6159 36354 345 1 3 681 1 2 160 3 0 5 chain 3634 chr11 135006516 + 22139260 22139318 Tigger1 2417 + 2250 2308 213101 7 1 0 14 3 4 33 chain 54955 chr11 135006516 + 22142397 22143154 L1P2 5180 - 863 5178 55734 447 1 0 193 0 3559 116 chain 119246 chr11 135006516 + 22143686 22145166 L1PA6 6164 + 4316 6156 31314 327 1 0 199 0 351 124 1 5 211 6 7 53 0 5 558 chain 81746 chr11 135006516 + 22148556 22149601 MER11C 1089 + 0 1063 42874 247 4 13 53 0 4 373 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 107675 chr11 135006516 + 22149624 22151176 THE1B-int 1605 - 6 1605 34810 267 13 14 110 14 0 7 10 24 19 7 0 40 1 14 69 7 8 44 0 1 24 0 1 248 20 21 93 18 25 22 6 7 74 8 35 228 6 7 197 chain 19320 chr11 135006516 + 22176881 22177222 THE1B 368 - 1 342 129179 39 32 29 57 1 0 9 6 5 12 12 17 5 0 2 16 5 4 59 1 0 87 chain 12626 chr11 135006516 + 22200260 22200459 THE1C 375 + 154 354 149746 18 26 25 6 0 3 144 1 0 4 chain 14766 chr11 135006516 + 22212863 22213109 THE1B 368 + 117 368 142044 52 6 5 22 10 18 10 18 16 128 chain 9887 chr11 135006516 + 22216418 22216917 L1MB7 1623 - 214 676 161142 31 46 41 14 1 0 4 118 97 13 1 0 7 1 0 5 5 0 12 2 0 27 67 68 20 43 42 30 9 8 43 chain 13044 chr11 135006516 + 22282705 22282887 THE1D 372 - 0 183 148062 32 1 0 48 4 7 30 1 0 66 chain 545019 chr11 135006516 + 22306356 22312334 L1PA2 6032 + 4 6032 2071 446 0 34 457 0 2 177 0 1 2017 0 8 952 0 3 634 0 2 1295 chain 39602 chr11 135006516 + 22313118 22313569 L1PA2 6032 - 0 449 69887 14 2 0 435 chain 57917 chr11 135006516 + 22313569 22314210 L1PA2 6032 + 4927 5572 54023 249 0 4 392 chain 3015 chr11 135006516 + 22324349 22324425 L1MC4a 1092 + 963 1032 224735 36 26 19 14 chain 210424 chr11 135006516 + 22335266 22337674 HERV17-int 4347 - 959 3373 18474 1107 1 2 544 2 0 267 7 0 400 0 11 22 0 2 7 0 1 51 chain 57733 chr11 135006516 + 22339133 22339865 LTR17 781 - 10 781 54116 21 0 22 401 0 1 172 15 0 11 4 35 108 chain 3948 chr11 135006516 + 22346951 22346996 MER51B 395 + 350 395 208162 45 chain 59927 chr11 135006516 + 22449103 22449814 L1PA7 6471 - 543 1257 52858 289 1 2 18 1 4 255 1 0 146 chain 44845 chr11 135006516 + 22449816 22450341 L1PA7 6471 + 5935 6461 63234 387 0 1 138 chain 45007 chr11 135006516 + 22461166 22461677 L1PA7 6471 - 18 529 63051 511 chain 20782 chr11 135006516 + 22468978 22469334 THE1A 353 - 0 353 124671 52 1 0 167 58 57 22 7 8 34 2 0 13 chain 28995 chr11 135006516 + 22506476 22506780 AluYa5 310 - 6 310 89014 304 chain 24203 chr11 135006516 + 22507744 22508029 AluSp 311 - 13 298 109194 285 chain 27065 chr11 135006516 + 22539744 22540051 L1PA3long 6157 + 5849 6155 96058 158 5 4 144 chain 541669 chr11 135006516 + 22544740 22550758 L1PA3long 6157 - 1 6156 2565 4 1 0 2882 0 4 872 0 4 1486 8 136 403 7 8 204 0 1 151 chain 26083 chr11 135006516 + 22558972 22559268 L1PA4 6152 + 5855 6151 99695 296 chain 7989 chr11 135006516 + 22598347 22598514 L1MA3 4352 + 4188 4325 171122 16 1 3 51 2 0 24 1 0 6 1 0 20 29 1 16 chain 180893 chr11 135006516 + 22629238 22631272 L1PA4 6152 + 4100 6136 20908 433 6 7 839 0 1 756 chain 27235 chr11 135006516 + 22651597 22651912 L1PA5 6144 - 2 317 95477 315 chain 15564 chr11 135006516 + 22655553 22655925 THE1B 368 - 0 368 139690 18 3 0 5 3 6 27 1 2 4 1 0 61 39 41 11 31 24 16 46 47 106 chain 13299 chr11 135006516 + 22662902 22663064 L1PA5 6144 - 7 171 147081 141 4 6 17 chain 542158 chr11 135006516 + 22668471 22674491 L1PA3long 6157 - 1 6156 2477 1891 0 8 3335 5 3 10 0 128 39 0 1 38 1 0 550 0 1 151 chain 2955 chr11 135006516 + 22708924 22709002 MER5B 177 - 82 160 225971 13 28 30 5 2 0 30 chain 7406 chr11 135006516 + 22709896 22709986 5S 121 + 0 90 174732 90 chain 194595 chr11 135006516 + 22717490 22719624 L1PA3long 6157 - 0 2134 19618 2134 chain 91907 chr11 135006516 + 22719624 22731714 L1PA3long 6157 + 3203 6153 38991 683 10813 1674 338 1 0 255 chain 30080 chr11 135006516 + 22767774 22768235 L1PA16 3655 + 3106 3578 84562 83 40 44 59 2 0 84 8 17 185 chain 18189 chr11 135006516 + 22801771 22802027 AluSc8 310 + 11 271 132362 120 25 29 111 chain 5278 chr11 135006516 + 22811855 22811914 L1PA6 6164 + 6103 6162 192221 59 chain 23786 chr11 135006516 + 22823723 22824012 L1PA5 6144 + 5853 6144 111555 277 1 3 11 chain 34972 chr11 135006516 + 22827176 22827710 MER41A 554 - 9 535 76224 41 1 25 102 7 8 47 1 0 4 0 1 72 1 2 121 3 0 5 40 9 89 chain 17911 chr11 135006516 + 22852889 22853112 AluSx1 309 + 35 258 133078 223 chain 55130 chr11 135006516 + 22855732 22856474 MER4E1 777 + 0 777 55621 110 2 0 5 6 8 211 0 19 83 0 1 73 1 0 28 4 12 71 0 1 27 5 6 10 0 6 106 chain 268686 chr11 135006516 + 22930328 22933268 L1PA3long 6157 + 3217 6157 15252 1247 8 6 1459 0 2 226 chain 58976 chr11 135006516 + 22941063 22941777 LTR30 714 - 0 714 53411 168 13 12 292 1 2 240 chain 29838 chr11 135006516 + 22954991 22955309 AluYb8 318 - 0 318 85322 318 chain 2628 chr11 135006516 + 22961684 22961741 MER53 195 + 108 167 231295 15 14 16 28 chain 27065 chr11 135006516 + 22963127 22963474 THE1B 368 - 0 358 96056 176 4 0 135 1 16 31 chain 112832 chr11 135006516 + 22963489 22965076 THE1B-int 1605 - 5 1605 33430 51 9 10 54 20 0 274 12 72 12 68 14 366 6 6 63 1 0 221 0 25 387 8 10 35 chain 4369 chr11 135006516 + 22969244 22969392 MER2 342 - 53 199 202327 24 77 78 6 3 0 38 chain 28729 chr11 135006516 + 22981414 22981723 AluYg6 310 + 0 309 90215 309 chain 430891 chr11 135006516 + 22982352 22987585 L1PA6 6164 - 3 6161 9292 7 3 0 830 0 4 107 0 1 274 0 9 126 0 2 550 0 1 356 0 885 202 1 0 539 8 8 395 0 1 29 0 1 242 0 3 666 5 7 92 0 17 554 3 4 53 44 45 53 1 2 93 chain 317647 chr11 135006516 + 22990358 22994948 L1PA11 4918 - 340 4902 12690 11 2 0 13 1 0 15 48 35 16 1 0 14 3 1 42 0 3 24 2 0 10 8 7 56 6 0 145 11 17 154 9 7 74 0 11 286 8 14 326 0 1 7 0 1 358 0 1 86 4 1 127 1 0 7 10 4 154 0 18 31 2 3 137 14 11 57 0 1 4 2 1 28 0 4 97 3 1 134 0 1 46 8 7 155 4 1 71 46 7 30 0 1 4 3 1 95 0 4 194 0 1 30 14 13 105 25 27 532 1 2 198 13 14 25 17 14 27 1 3 168 17 29 5 2 0 33 1 0 52 2 0 13 1 0 30 10 7 36 2 0 26 chain 18212 chr11 135006516 + 23007231 23007460 THE1B-int 1605 - 5 227 132308 100 7 0 122 chain 30161 chr11 135006516 + 23008508 23008918 HERVL-int 5654 - 0 417 84307 65 8 6 67 0 1 22 11 16 39 0 3 198 chain 68993 chr11 135006516 + 23024798 23025803 THE1A-int 1579 - 0 1022 48812 251 1 0 5 5 4 89 0 1 204 26 41 205 34 1 11 1 34 61 29 32 83 chain 147081 chr11 135006516 + 23028626 23030264 L1PA3long 6157 - 1692 3326 25013 887 4 1 614 1 0 132 chain 151275 chr11 135006516 + 23030266 23031950 L1PA3long 6157 + 4468 6157 24433 413 0 4 421 0 1 850 chain 3946 chr11 135006516 + 23046128 23046174 MADE1 96 + 50 96 208178 46 chain 534785 chr11 135006516 + 23049663 23055684 L1PA3long 6157 - 2 6155 3616 336 0 1 1506 0 1 4 1 0 291 4 0 118 0 2 632 0 2 1341 2 1 1016 0 128 529 0 3 89 1 2 151 chain 12497 chr11 135006516 + 23084138 23084547 MSTB 430 - 14 414 150253 52 53 57 92 73 62 12 18 18 18 59 58 26 1 0 5 chain 30564 chr11 135006516 + 23088901 23089260 L1PA6 6164 - 2 360 83272 337 1 0 21 chain 155881 chr11 135006516 + 23104042 23105749 L1PA3long 6157 - 4 1711 23872 1707 chain 25583 chr11 135006516 + 23105749 23106036 L1HS 6032 + 362 649 99172 287 chain 79252 chr11 135006516 + 23114048 23114958 LTR5A 1029 - 0 909 43929 879 1 0 30 chain 22346 chr11 135006516 + 23126452 23126746 AluY 311 + 0 293 118717 42 11 6 84 0 4 157 chain 80087 chr11 135006516 + 23138348 23139405 MER11A 1151 - 0 1131 43546 66 1 0 90 0 1 102 2 59 13 0 1 72 0 4 184 1 0 170 6 7 77 0 11 110 0 1 5 8 0 84 7 15 59 chain 3182 chr11 135006516 + 23177926 23177964 L1PB4 2604 + 2481 2519 221277 38 chain 48565 chr11 135006516 + 23184325 23184961 L1PA8 5853 + 5213 5853 60063 253 0 4 40 9 13 41 1 0 44 2 0 70 2 1 15 1 0 46 2 1 17 0 2 93 chain 229413 chr11 135006516 + 23197704 23200231 L1PA3long 6157 - 0 2526 17328 1522 1 0 1004 chain 19186 chr11 135006516 + 23202255 23202492 L1PA6 6164 - 4 241 129570 156 1 2 26 1 0 53 chain 39312 chr11 135006516 + 23205479 23205931 LTR7 482 - 0 482 70303 98 0 2 66 1 0 21 0 31 212 2 0 52 chain 294401 chr11 135006516 + 23207178 23210836 HERVH-int 3825 - 0 3825 13742 225 0 2 112 0 1 36 1 4 6 3 0 109 0 210 39 9 11 632 1 0 280 0 1 441 8 35 612 0 1 287 0 3 13 0 2 6 0 1 38 21 20 38 6 56 24 1 0 9 2 1 36 129 0 534 chain 38404 chr11 135006516 + 23210851 23211290 LTR7 482 - 13 482 71570 85 0 2 69 1 0 18 0 31 212 2 0 52 chain 119261 chr11 135006516 + 23215098 23216404 L1PA3long 6157 - 5 1311 31311 1306 chain 18013 chr11 135006516 + 23234823 23235068 AluY 311 + 50 292 132817 82 1 2 123 7 4 16 1 0 15 chain 289494 chr11 135006516 + 23238954 23242290 L1PA5 6144 + 2783 6132 14054 130 1 0 345 0 2 237 0 1 819 0 1 976 1 0 98 0 3 195 0 6 398 0 1 6 5 6 125 chain 8011 chr11 135006516 + 23276767 23276875 L1PREC2 3366 - 2818 2925 170987 77 2 1 29 chain 91655 chr11 135006516 + 23281512 23282571 L1PA5 6144 - 0 1060 38969 178 8 10 64 2 1 807 chain 93364 chr11 135006516 + 23282571 23283605 L1PA5 6144 + 4058 5092 38548 1034 chain 58983 chr11 135006516 + 23286335 23287079 LTR17 781 - 0 781 53408 31 0 22 17 0 1 237 0 1 31 0 2 112 1 0 72 3 1 108 0 13 121 0 1 11 chain 557541 chr11 135006516 + 23319702 23325737 L1PA2 6032 - 0 6030 551 143 7 0 2072 0 1 734 0 1 3079 chain 56898 chr11 135006516 + 23338530 23339171 L1P1 4361 - 33 673 54594 23 1 0 131 0 1 23 1 0 462 chain 517450 chr11 135006516 + 23342533 23348676 L1PA5 6144 + 0 6140 5428 134 7 21 183 30 0 9 5 35 99 1 0 71 0 1 167 0 1 340 0 1 107 9 0 371 0 1 394 1 0 139 7 5 594 4 7 490 2 0 374 0 1 130 1 0 672 0 4 943 1 0 681 1 2 15 13 0 148 chain 24094 chr11 135006516 + 23366995 23367274 AluSp 311 + 9 289 109768 272 0 1 7 chain 111144 chr11 135006516 + 23384012 23385570 THE1B-int 1605 - 18 1605 33898 189 29 27 574 2 35 7 33 0 85 0 1 70 11 12 81 2 0 55 1 27 219 0 6 149 31 30 20 chain 39054 chr11 135006516 + 23389122 23389626 L1PA8 5853 + 5357 5853 70660 209 1 0 42 2 0 70 2 1 10 1 0 51 2 1 19 1 0 46 1 0 47 chain 25007 chr11 135006516 + 23398160 23398458 AluSc8 310 + 5 306 104749 127 0 3 171 chain 14866 chr11 135006516 + 23405607 23405973 THE1D 372 + 0 372 141731 56 61 52 58 0 6 6 57 62 16 25 29 87 chain 4735 chr11 135006516 + 23422017 23422068 LTR12C 1709 + 1658 1709 198113 51 chain 313199 chr11 135006516 + 23429377 23433551 L1PA8 5853 - 0 4198 12884 92 2 1 19 2 1 33 15 14 14 1 0 71 2 0 44 1 0 43 0 1 124 0 8 379 2 0 811 0 2 499 28 21 244 81 62 166 0 1 256 16 20 171 9 13 259 0 4 209 1 0 10 10 21 18 0 13 155 0 1 18 17 9 36 5 24 221 1 0 60 0 1 29 chain 45756 chr11 135006516 + 23435434 23435958 L1PA4 6152 + 5628 6152 62267 371 7 0 7 0 7 139 chain 72516 chr11 135006516 + 23441991 23442803 L1PA5 6144 + 5329 6141 47260 812 chain 170942 chr11 135006516 + 23453371 23455272 L1PA3long 6157 - 0 1933 21950 338 0 1 188 0 1 213 0 18 335 0 11 63 0 1 764 chain 150440 chr11 135006516 + 23455279 23456922 L1PA3long 6157 + 2593 4237 24549 658 0 1 985 chain 59150 chr11 135006516 + 23462547 23463306 LTR17 781 + 0 755 53304 39 2 0 145 4 0 135 12 11 55 1 4 366 chain 5298 chr11 135006516 + 23466760 23466818 L1PA5 6144 - 1326 1384 192030 58 chain 40256 chr11 135006516 + 23466822 23467284 L1PA5 6144 + 4831 5294 68936 190 1 2 271 chain 72186 chr11 135006516 + 23467285 23468121 L1PA5 6144 + 5294 6131 47381 511 0 1 325 chain 32253 chr11 135006516 + 23471911 23472478 L1PREC2 3366 + 2493 3022 80436 259 2 0 53 2 1 44 1 0 4 3 0 6 0 1 6 27 21 16 29 22 25 4 1 11 22 8 35 6 4 12 chain 40661 chr11 135006516 + 23478829 23479339 L1PA7 6471 + 5947 6461 68349 351 17 21 142 chain 6401 chr11 135006516 + 23497111 23497192 MER67D 511 - 359 440 182020 81 chain 500412 chr11 135006516 + 23505263 23511731 L1PA7 6471 + 3 6469 6811 93 4 5 88 1 0 5 6 7 76 0 1 7 11 10 117 11 2 176 7 8 559 1 3 180 0 1 38 14 2 12 0 3 317 0 4 8 6 11 33 0 4 121 0 3 138 1 0 24 0 1 80 1 2 119 1 0 331 0 5 35 20 0 506 31 31 56 8 12 286 0 2 311 1 0 70 0 1 1022 0 1 25 1 0 644 4 5 10 0 3 21 0 1 61 0 2 6 3 4 84 1 2 211 2 1 82 37 34 193 3 4 136 2 0 10 chain 27695 chr11 135006516 + 23543151 23543466 L1PA7 6471 - 364 679 94060 315 chain 27080 chr11 135006516 + 23543466 23543785 L1PA7 6471 + 6139 6458 95999 319 chain 4354 chr11 135006516 + 23552900 23552951 L1MB1 2102 - 1824 1875 202525 51 chain 30217 chr11 135006516 + 23563194 23563648 LTR7B 505 + 0 495 84137 107 1 11 57 0 38 12 3 27 28 29 0 87 1 0 74 14 13 41 chain 28695 chr11 135006516 + 23574660 23575014 THE1A 353 - 0 353 90349 111 0 1 4 1 0 127 1 0 110 chain 5694 chr11 135006516 + 23652695 23652790 L1PB1 5432 - 169 262 188161 22 7 6 14 3 2 49 chain 17379 chr11 135006516 + 23654451 23654712 L1M1 2793 - 1208 1463 134564 20 0 1 69 4 5 10 7 4 57 5 0 89 chain 42917 chr11 135006516 + 23654736 23655245 L1P1 4361 - 696 1205 65516 367 0 1 96 1 0 45 chain 135334 chr11 135006516 + 23655248 23656919 L1PA6 6164 + 4485 6162 26949 1500 30 16 6 0 17 31 0 3 104 chain 3111 chr11 135006516 + 23660566 23660599 MSTA 426 - 230 263 222712 33 chain 7984 chr11 135006516 + 23663331 23663477 L1MA1 4479 + 4033 4172 171142 42 10 9 22 3 1 35 1 0 9 1 0 6 4 2 13 chain 144014 chr11 135006516 + 23667815 23669506 L1PA5 6144 - 0 1684 25476 11 2 1 101 1 0 1446 6 1 124 chain 14349 chr11 135006516 + 23674458 23674639 LTR12C 1709 - 600 781 143383 181 chain 3163 chr11 135006516 + 23713781 23713820 MER67C 710 + 78 117 221700 39 chain 24964 chr11 135006516 + 23731524 23731852 L1M1 2793 + 1288 1614 104982 185 9 7 134 chain 497361 chr11 135006516 + 23753143 23759581 L1PA7 6471 + 7 6461 6990 59 5 1 100 0 16 44 15 0 186 6 1 195 4 3 173 1 0 44 1 2 373 0 1 4 1 0 123 6 0 7 10 16 17 0 1 764 5 0 92 12 10 87 0 1 125 4 0 181 3 4 95 0 1 100 0 2 390 27 27 194 4 5 31 0 2 35 7 4 26 0 4 456 0 1 174 0 2 15 1 0 273 1 20 528 0 3 306 2 3 82 1 0 61 0 1 143 1 0 23 6 8 5 1 0 53 2 0 293 0 2 153 0 1 4 1 0 215 1 2 81 chain 12538 chr11 135006516 + 23760500 23760634 L1PA3long 6157 + 6002 6136 150087 134 chain 38443 chr11 135006516 + 23787885 23788388 MER41A 554 - 28 537 71524 55 0 5 373 5 6 70 chain 40164 chr11 135006516 + 23792981 23793499 MER41A 554 - 35 551 69088 6 2 0 239 5 4 176 0 1 90 chain 126173 chr11 135006516 + 23812257 23813645 L1PA2 6032 - 0 1395 29048 43 0 3 8 0 4 1337 chain 121468 chr11 135006516 + 23813645 23814958 L1PA2 6032 + 3319 4632 30516 1313 chain 3238 chr11 135006516 + 23871325 23871395 U6 107 + 6 74 220263 28 22 20 20 chain 14034 chr11 135006516 + 23879419 23879611 MER30 238 + 31 236 144437 82 8 20 98 0 1 4 chain 61651 chr11 135006516 + 23898427 23899118 L1PA4 6152 + 5454 6152 52058 685 0 7 6 chain 28746 chr11 135006516 + 23901262 23901707 LTR7Y 441 - 0 441 90142 197 68 84 57 9 0 58 16 5 40 chain 115343 chr11 135006516 + 23904145 23905543 LTR12C 1709 - 0 1709 32667 269 8 0 46 1 0 4 0 1 161 0 4 106 0 316 586 6 5 211 chain 38853 chr11 135006516 + 23906931 23907446 MER41C 542 - 0 542 70941 32 0 2 13 0 3 160 0 21 109 1 0 4 6 7 141 0 1 49 chain 283529 chr11 135006516 + 23910428 23914069 HERVH-int 3825 - 0 3825 14430 7 1 0 215 1 3 270 0 210 39 9 11 923 0 4 44 8 13 370 4 31 24 4 5 13 0 1 172 1 0 13 0 2 24 9 0 205 15 0 156 0 1 290 1 0 68 23 2 12 1 0 11 2 0 30 24 0 18 3 20 14 22 12 12 1 0 10 1 0 24 26 25 521 chain 111722 chr11 135006516 + 23955474 23956835 LTR12C 1709 - 0 1709 33750 82 1 0 21 0 1 41 0 101 23 0 1 211 0 4 106 3 1 5 1 0 260 0 118 101 0 102 245 1 26 260 chain 406951 chr11 135006516 + 23957743 23962864 HERV9-int 5642 - 817 5642 9878 9 0 1 1187 0 3 165 1 0 86 0 1 137 0 1 21 5 4 1101 2 1 20 1 0 4 0 1 387 0 1 113 2 1 211 0 1 260 4 0 62 80 0 133 4 0 117 2 1 283 211 0 230 1 0 140 0 1 142 chain 118579 chr11 135006516 + 23962956 23964385 LTR12C 1709 - 0 1706 31588 84 1 0 397 0 4 106 3 1 5 1 0 85 0 278 136 0 1 4 2 0 27 5 4 310 0 1 263 chain 31249 chr11 135006516 + 23994859 23995304 MER4A 717 - 244 717 82084 65 18 22 26 1 4 21 0 21 73 0 1 194 1 0 46 chain 19728 chr11 135006516 + 23997614 23997834 L1PA4 6152 + 5931 6151 128019 220 chain 4506 chr11 135006516 + 24008083 24008154 L1PREC2 3366 - 318 387 200720 38 6 4 27 chain 33394 chr11 135006516 + 24047587 24048053 LTR15 485 + 2 478 78579 37 5 9 102 0 2 124 0 4 89 9 11 57 1 0 5 2 0 16 0 1 19 chain 6975 chr11 135006516 + 24059351 24059429 THE1B 368 + 290 368 177640 78 chain 32799 chr11 135006516 + 24092568 24092959 L1PA5 6144 - 2723 3119 79528 316 4 9 71 chain 233062 chr11 135006516 + 24092959 24095656 L1PA5 6144 + 3423 6140 17141 5 0 3 251 2 0 888 0 2 57 0 5 69 0 1 266 0 1 326 0 4 81 3 7 297 0 2 32 0 1 170 3 1 109 0 1 138 chain 4324 chr11 135006516 + 24100450 24100501 LTR38 553 + 119 170 202905 51 chain 23609 chr11 135006516 + 24110537 24110841 LTR70 1284 - 969 1274 112526 221 0 1 83 chain 53765 chr11 135006516 + 24152978 24153707 LTR12 884 + 0 884 56497 25 1 0 6 4 7 17 0 107 178 2 26 12 16 38 468 chain 150582 chr11 135006516 + 24190335 24192037 L1HS 6032 - 2463 4166 24529 180 0 2 156 1 0 190 0 2 52 1 0 796 1 0 325 chain 72064 chr11 135006516 + 24204333 24205137 L1PA3long 6157 - 1438 2243 47450 745 0 1 59 chain 126844 chr11 135006516 + 24205138 24206568 L1PA3long 6157 + 4718 6157 28850 638 1 2 623 0 2 151 0 6 17 chain 31672 chr11 135006516 + 24237156 24237607 L1PA10 4194 + 2673 3124 81368 56 22 24 111 7 5 255 chain 515717 chr11 135006516 + 24238659 24244803 L1PA5 6144 + 3 6144 5598 431 6 0 420 3 0 294 3 6 254 1 6 831 0 2 9 2 0 434 6 11 475 1 0 82 0 2 9 10 11 994 0 1 23 1 0 13 1 2 13 3 0 155 0 2 328 1 2 483 11 0 371 19 21 197 1 0 259 chain 122380 chr11 135006516 + 24288998 24290397 L1PA4 6152 - 9 1424 30256 91 0 11 716 13 17 203 0 1 376 chain 12778 chr11 135006516 + 24295069 24295722 LTR12C 1709 - 195 757 149147 20 1 0 7 54 24 22 403 343 146 chain 4702 chr11 135006516 + 24295440 24295576 LTR12C 1709 - 991 1049 196171 40 78 0 18 chain 274798 chr11 135006516 + 24300630 24303827 L1PA5 6144 - 10 3214 14935 127 6 5 176 0 1 477 1 6 55 2 0 573 3 2 90 1 0 277 0 4 147 0 1 123 0 1 457 9 8 324 0 1 349 chain 567451 chr11 135006516 + 24349497 24355527 L1HS 6032 + 1 6032 59 73 0 1 5957 chain 40839 chr11 135006516 + 24362534 24363081 MLT2A2 560 - 2 560 68118 134 0 1 4 1 0 5 11 22 392 chain 48855 chr11 135006516 + 24377403 24377944 L1PA4 6152 + 5599 6140 59834 541 chain 21253 chr11 135006516 + 24382834 24383208 THE1B 368 + 0 368 123010 64 5 19 6 13 0 30 41 41 12 2 1 127 7 0 7 0 1 60 chain 4137 chr11 135006516 + 24401159 24401215 L1MA5A 2387 - 81 136 205410 10 1 0 45 chain 81736 chr11 135006516 + 24408969 24409858 L1PA2 6032 - 0 891 42680 19 0 1 137 0 1 733 chain 112020 chr11 135006516 + 24409858 24411063 L1PA2 6032 + 3927 5132 33658 1205 chain 28851 chr11 135006516 + 24423181 24423487 AluYg6 310 + 0 306 89668 306 chain 27796 chr11 135006516 + 24427013 24427387 HSMAR1 1287 + 24 403 93710 69 0 3 20 21 23 264 chain 115221 chr11 135006516 + 24436681 24438131 LTR12C 1709 - 0 1709 32708 204 1 0 277 0 4 106 3 1 5 1 0 98 0 278 157 8 9 292 19 0 59 8 7 212 chain 14841 chr11 135006516 + 24438147 24438386 THE1D 372 + 102 357 141807 61 29 31 25 5 6 109 0 13 10 chain 21146 chr11 135006516 + 24449771 24450116 MER34B 572 + 164 517 123386 38 2 1 20 8 7 142 1 7 42 33 37 59 chain 73655 chr11 135006516 + 24467639 24468598 LTR5_Hs 974 + 0 974 46708 115 5 13 161 0 1 177 0 1 188 1 0 105 0 1 57 8 15 19 20 18 103 chain 125378 chr11 135006516 + 24471675 24473081 L1PA5 6144 - 1757 3165 29284 193 0 1 326 0 1 887 chain 20371 chr11 135006516 + 24473087 24473319 L1PA5 6144 + 4425 4657 125992 232 chain 128537 chr11 135006516 + 24473319 24474800 L1PA5 6144 + 4658 6144 28440 168 0 1 470 0 4 843 chain 14928 chr11 135006516 + 24497662 24498375 MSTB 430 - 24 430 141546 31 7 0 45 21 26 13 1 0 30 15 16 12 0 12 9 2 0 6 21 19 12 320 0 17 2 0 10 4 0 7 5 18 48 29 30 29 1 0 16 chain 17395 chr11 135006516 + 24508251 24508445 L1PA4 6152 - 1901 2095 133790 194 chain 160345 chr11 135006516 + 24508445 24510287 L1PA4 6152 + 4267 6134 23292 221 0 2 539 1 0 263 0 1 5 0 4 481 0 8 231 6 17 95 chain 2851 chr11 135006516 + 24538352 24538384 LTR24C 604 - 481 513 227847 32 chain 6968 chr11 135006516 + 24561861 24562142 MLT1A 405 + 56 353 177694 61 2 0 5 3 5 10 159 176 21 1 0 19 chain 5450 chr11 135006516 + 24572813 24572879 L1MB8 1703 + 1439 1505 190524 66 chain 12402 chr11 135006516 + 24581498 24581646 L1PA7 6471 + 6288 6436 150629 148 chain 25969 chr11 135006516 + 24583041 24583362 L1PA7 6471 + 6141 6454 100138 89 8 0 224 chain 6758 chr11 135006516 + 24627842 24627948 Tigger5 388 + 193 295 179267 42 1 0 25 2 0 11 1 0 24 chain 22101 chr11 135006516 + 24643679 24643946 L1PA4 6152 - 3 271 119776 110 0 1 32 7 0 8 0 7 110 chain 193828 chr11 135006516 + 24678914 24681122 L1PA4 6152 + 3929 6152 19700 186 0 1 104 1 0 124 0 4 805 0 1 150 0 4 654 0 1 178 0 5 6 chain 29164 chr11 135006516 + 24702519 24702826 AluYb8 318 - 11 318 88232 307 chain 42133 chr11 135006516 + 24716043 24716623 L1PA8 5853 + 5270 5838 66469 294 1 0 44 2 0 17 0 1 51 26 18 44 3 2 19 5 4 74 chain 34180 chr11 135006516 + 24729298 24729768 LTR10F 562 - 0 562 77379 89 2 0 196 5 11 13 0 24 16 0 4 24 1 4 14 1 57 10 0 1 99 chain 4185 chr11 135006516 + 24735601 24735674 MER2 342 + 135 215 204758 36 2 0 18 1 10 16 chain 9374 chr11 135006516 + 24735697 24735847 L1PA8 5853 + 5698 5852 163691 42 2 1 13 7 6 64 1 7 21 chain 22107 chr11 135006516 + 24742247 24742520 AluYc3 301 - 11 289 119748 30 1 5 140 1 2 101 chain 283508 chr11 135006516 + 24762994 24767193 L1PB1 5432 - 19 3894 14432 9 1 0 13 5 4 10 0 3 4 1 0 22 2 0 16 8 5 14 24 13 4 1 0 16 1 0 43 1 0 18 1 0 52 2 0 9 21 16 4 1 0 24 1 0 9 296 7 69 1 2 403 2 7 330 6 8 110 1 0 31 3 4 61 0 5 112 1 0 224 2 4 304 10 9 181 24 0 142 0 3 80 0 1 163 4 5 325 0 5 12 5 0 238 6 8 5 2 0 342 0 3 276 17 18 60 4 0 10 chain 26384 chr11 135006516 + 24795491 24795878 MLT2A1 477 + 0 382 98476 168 7 4 7 0 1 24 0 1 101 0 6 14 3 1 20 22 14 21 chain 6867 chr11 135006516 + 24802705 24802785 L1PA6 6164 - 10 90 178443 80 chain 23390 chr11 135006516 + 24826641 24826948 THE1B 368 - 62 368 113699 131 4 3 172 chain 70091 chr11 135006516 + 24855637 24856603 L1PA8 5853 - 0 959 48354 92 2 1 17 1 0 55 2 1 8 3 0 7 8 10 54 6 4 40 1 0 48 0 1 336 7 9 161 2 0 10 6 5 100 chain 39896 chr11 135006516 + 24856603 24857078 L1PA8 5853 + 4443 4918 69229 475 chain 469175 chr11 135006516 + 24870680 24876619 L1PA7 6471 - 3 6455 8066 329 6 7 48 0 2 39 0 2 336 1 0 81 0 3 77 0 1 4 1 0 383 0 3 174 1 2 303 0 8 41 1 0 4 0 1 356 0 10 248 1 0 4 26 14 86 3 2 166 1 0 152 4 10 47 0 2 66 0 5 427 0 2 58 2 1 78 1 34 204 1 0 5 4 6 456 6 460 463 0 1 43 0 4 308 4 0 6 4 8 123 1 0 150 5 8 195 10 0 39 7 6 4 0 1 346 chain 36531 chr11 135006516 + 24883097 24883634 LTR22A 463 - 0 463 74200 236 82 8 219 chain 155338 chr11 135006516 + 24896650 24898348 L1PA3long 6157 - 0 1704 23944 1037 0 6 661 chain 4877 chr11 135006516 + 24899513 24899572 L1MA2 4263 - 205 264 196519 59 chain 40547 chr11 135006516 + 24900788 24901313 L1PA8A 6298 - 280 804 68519 133 0 6 9 6 0 298 1 0 78 chain 17261 chr11 135006516 + 24918376 24918730 LTR12C 1709 + 875 1194 134894 137 41 0 56 2 17 7 15 0 17 44 50 35 chain 1707 chr11 135006516 + 24918513 24918545 LTR12C 1709 + 734 766 138205 32 chain 2347 chr11 135006516 + 24918651 24918695 LTR12C 1709 + 790 834 138205 44 chain 182264 chr11 135006516 + 24937895 24940000 L1PA5 6144 - 12 2119 20762 49 0 1 89 5 0 6 1 6 368 0 1 298 1 2 141 2 1 1145 chain 13204 chr11 135006516 + 24940006 24940155 L1PA5 6144 + 3880 4029 147446 149 chain 37215 chr11 135006516 + 24955271 24955822 LTR7B 505 - 14 505 73218 234 42 0 8 8 26 22 35 1 149 3 1 50 chain 549668 chr11 135006516 + 24979302 24985462 L1PA3long 6157 - 0 6157 1494 146 1 4 183 1 0 849 1 0 611 0 4 329 0 1 85 0 1 524 0 4 1764 17 0 459 4 7 1186 chain 59300 chr11 135006516 + 25012539 25013594 L1PB1 5432 - 12 933 53223 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 16 27 15 14 2 1 44 1 0 16 2 1 48 5 3 10 6 2 11 1 0 10 1 0 22 1 0 8 106 3 50 3 4 65 0 1 10 4 0 5 0 4 261 0 2 71 4 0 7 8 9 115 chain 172235 chr11 135006516 + 25018188 25020083 L1PA3long 6157 - 21 1918 21788 126 0 1 1752 0 1 17 chain 38881 chr11 135006516 + 25021314 25021832 LTR12 884 - 1 884 70896 32 0 236 239 2 0 43 0 66 111 0 66 69 8 7 14 chain 397367 chr11 135006516 + 25023469 25028236 HERV9-int 5642 - 817 5642 10185 1346 0 2 91 1 0 99 0 1 893 0 2 267 0 1 428 1 0 41 0 1 50 5 8 436 0 4 51 1 0 162 1 6 145 1 0 117 0 26 156 9 22 302 0 4 164 chain 38313 chr11 135006516 + 25028274 25028781 LTR12 884 - 10 884 71692 51 19 255 158 0 1 32 2 0 97 0 132 148 chain 116402 chr11 135006516 + 25035305 25036614 L1PA4 6152 - 9 1318 32312 1309 chain 122926 chr11 135006516 + 25044301 25045759 L1PA5 6144 - 2107 3581 30045 321 0 1 33 1 0 64 1 2 114 7 14 8 1 0 266 2 12 32 1 0 607 chain 181228 chr11 135006516 + 25045759 25047842 L1PA5 6144 + 4048 6138 20877 428 0 2 711 0 1 202 0 3 411 1 2 330 chain 53711 chr11 135006516 + 25066152 25066763 L1PA4 6152 + 5537 6151 56538 112 0 1 357 0 2 142 chain 27702 chr11 135006516 + 25088727 25089073 L1PA7 6471 - 797 1147 94034 57 1 5 288 chain 61892 chr11 135006516 + 25089082 25089857 L1PA7 6471 + 5671 6456 51951 37 1 2 163 0 4 39 0 1 40 0 4 341 1 0 13 0 1 140 chain 10541 chr11 135006516 + 25092835 25092951 L1PA4 6152 + 6035 6151 158083 116 chain 16822 chr11 135006516 + 25093177 25093374 L1PA5 6144 + 5946 6143 136057 197 chain 48809 chr11 135006516 + 25094462 25095131 LTR76 689 - 8 682 59871 31 4 7 130 12 6 26 0 6 77 2 1 8 2 0 340 0 3 15 2 0 13 0 4 7 chain 29850 chr11 135006516 + 25134976 25135289 AluYb8 318 + 0 313 85279 313 chain 26588 chr11 135006516 + 25136798 25137107 AluYf5 307 + 0 307 97700 260 6 4 43 chain 31469 chr11 135006516 + 25149216 25149590 L1PA7 6471 + 6097 6466 81692 200 2 1 23 2 0 138 2 0 7 chain 487336 chr11 135006516 + 25162965 25168386 L1PA3long 6157 - 1 5554 7466 286 0 3 381 0 1 555 0 1 1168 1 0 2855 11 139 164 chain 4797 chr11 135006516 + 25182609 25182669 MER41B 635 - 87 164 197394 51 0 17 9 chain 143189 chr11 135006516 + 25188591 25190246 L1PA4 6152 - 9 1669 25618 134 6 10 5 3 0 365 0 1 318 0 4 272 1 0 551 chain 11511 chr11 135006516 + 25194585 25194728 MER75B 242 - 1 144 154249 143 chain 163071 chr11 135006516 + 25212758 25214626 L1PA4 6152 + 4270 6143 22932 78 0 4 1212 1 2 577 chain 143918 chr11 135006516 + 25251195 25252942 L1PA5 6144 - 2 1758 25493 110 1 0 145 9 8 1040 0 8 15 14 9 7 0 5 136 0 2 127 0 1 143 chain 84483 chr11 135006516 + 25266267 25267306 MER11B 1079 - 15 1079 41724 290 6 8 97 0 1 332 3 20 91 0 5 220 chain 42550 chr11 135006516 + 25285250 25285756 MER9a1 513 - 7 513 65963 506 chain 56582 chr11 135006516 + 25296191 25296863 L1PA5 6144 - 4 678 54798 222 0 2 450 chain 538872 chr11 135006516 + 25296916 25303010 L1PA3long 6157 - 39 6151 3008 101 3 4 5 1 0 1482 0 1 1009 0 1 1119 0 4 66 0 1 988 0 9 192 0 1 818 0 1 310 chain 70571 chr11 135006516 + 25303321 25304185 L1P1 4361 + 3150 4033 48127 53 1 2 634 0 18 176 chain 60058 chr11 135006516 + 25326362 25327159 L1P3 4156 - 17 830 52617 24 2 1 9 2 0 43 2 1 122 0 1 72 0 1 4 7 19 292 0 4 51 0 1 32 0 1 135 chain 129600 chr11 135006516 + 25327159 25328752 L1PA7 6471 + 4857 6461 28180 98 2 0 28 6 8 511 0 2 117 1 2 68 0 1 19 1 11 123 0 1 463 1 0 14 0 1 89 4 0 48 chain 40744 chr11 135006516 + 25348341 25348831 LTR7B 505 - 0 505 68250 256 8 22 176 0 1 50 chain 42410 chr11 135006516 + 25351459 25352009 HERVH-int 3825 - 0 549 66138 352 1 0 138 0 10 6 10 0 43 chain 19705 chr11 135006516 + 25361513 25361734 L1PA5 6144 - 6 227 128077 221 chain 128512 chr11 135006516 + 25386815 25388294 L1PA5 6144 + 4648 6130 28449 649 0 4 267 0 2 52 15 12 496 chain 50892 chr11 135006516 + 25402713 25403305 L1PA4 6152 - 0 593 58374 6 0 5 425 4 0 157 chain 54955 chr11 135006516 + 25420879 25421481 L1PA3long 6157 + 5555 6157 55736 602 chain 25930 chr11 135006516 + 25436338 25436663 L1PA7 6471 + 6133 6458 100301 206 0 1 103 1 0 15 chain 5391 chr11 135006516 + 25444859 25444928 L1MA5A 2387 + 1865 1942 191077 53 0 8 16 chain 537445 chr11 135006516 + 25446680 25452704 L1PA3long 6157 + 0 6156 3245 152 0 1 187 0 1 435 0 128 1251 0 1 1010 0 1 41 0 1 6 1 0 300 0 1 1394 1 0 1246 chain 32042 chr11 135006516 + 25482181 25482564 L1PA4 6152 - 0 384 80795 333 0 1 50 chain 4140 chr11 135006516 + 25497907 25497959 MSTB 430 + 344 395 205355 11 1 0 40 chain 194379 chr11 135006516 + 25510252 25512510 HERVH-int 3825 - 0 2267 19643 392 24 25 324 6 9 391 0 1 673 0 4 448 chain 67908 chr11 135006516 + 25513838 25514591 L1PA4 6152 - 9 762 49281 753 chain 19419 chr11 135006516 + 25514591 25514814 L1PA4 6152 + 5174 5402 127916 126 0 5 97 chain 529083 chr11 135006516 + 25517672 25523683 L1PA3long 6157 - 1 6157 4289 147 1 2 137 0 3 380 0 2 185 1 0 370 0 1 571 0 4 2083 1 0 528 0 6 613 0 1 219 0 128 623 0 1 152 chain 8197 chr11 135006516 + 25542856 25542966 MER85 139 - 0 129 169966 12 5 14 8 0 10 85 chain 5886 chr11 135006516 + 25555862 25555933 MLT1D 503 + 432 503 186319 71 chain 91570 chr11 135006516 + 25562260 25563273 LTR5A 1029 + 0 1029 39102 134 0 13 635 1 4 243 chain 12064 chr11 135006516 + 25580047 25580230 L1PB2 3958 - 246 425 151925 29 1 0 60 6 5 35 1 0 38 1 0 12 chain 27955 chr11 135006516 + 25600940 25601363 LTR7 482 - 0 482 93143 49 12 14 124 1 32 38 0 1 109 8 46 10 20 5 14 0 2 38 chain 24340 chr11 135006516 + 25607392 25607729 HSMAR1 1287 - 0 337 108424 55 6 7 134 5 4 137 chain 18939 chr11 135006516 + 25607740 25608017 L1PA8 5853 - 0 272 130256 92 5 4 16 10 9 53 1 0 71 2 0 27 chain 63473 chr11 135006516 + 25612343 25613382 L1PB1 5432 - 9 1012 51254 19 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 15 6 6 1 0 16 2 1 17 5 6 18 2 1 15 1 2 52 2 0 9 2 0 3 2 0 13 1 0 5 1 0 24 18 16 269 6 12 10 5 6 94 0 2 65 0 1 5 6 5 136 0 3 44 21 1 25 chain 21903 chr11 135006516 + 25633322 25634010 L1PB1 5432 - 4720 5406 120605 28 12 11 93 132 133 126 17 16 28 1 0 5 193 193 53 chain 99082 chr11 135006516 + 25638021 25639165 L1PA5 6144 + 4990 6138 37002 301 0 4 528 0 1 7 1 0 164 1 0 103 1 2 38 chain 155140 chr11 135006516 + 25642908 25644773 L1PA7 6471 - 1 1876 23964 154 0 1 788 0 11 18 0 1 5 10 1 193 0 1 89 0 1 149 0 4 459 chain 158095 chr11 135006516 + 25656536 25658263 L1PA2 6032 - 2 1728 23576 18 1 0 831 0 1 640 1 0 236 chain 39503 chr11 135006516 + 25658265 25658705 L1P1 4361 + 1924 2364 70016 440 chain 528952 chr11 135006516 + 25665338 25671332 L1PA3long 6157 - 14 6147 4306 268 0 3 571 1 0 749 0 3 229 1 0 25 0 2 348 0 1 2334 6 5 696 0 128 204 0 4 409 10 11 143 chain 46250 chr11 135006516 + 25678138 25678663 L1PA5 6144 - 7 532 61813 525 chain 44816 chr11 135006516 + 25678672 25679170 L1PA5 6144 + 5108 5607 63272 137 0 1 361 chain 8638 chr11 135006516 + 25680385 25680487 MLT2A1 477 - 90 192 167553 102 chain 23917 chr11 135006516 + 25713807 25714097 AluY 311 + 0 285 110826 83 5 0 202 chain 7237 chr11 135006516 + 25714267 25714441 L1PB1 5432 - 9 174 175850 5 1 0 14 1 0 12 1 0 21 6 5 20 2 0 12 33 32 5 1 0 16 1 0 23 chain 162478 chr11 135006516 + 25714546 25716369 L1PA4 6152 - 11 1861 23002 102 6 17 20 0 1 246 0 3 789 0 11 283 0 1 377 chain 37031 chr11 135006516 + 25727294 25727827 L1PA8 5853 - 0 523 73480 6 1 0 33 0 1 50 4 3 19 2 1 61 2 1 70 2 0 44 1 0 49 9 5 152 1 2 6 1 0 20 chain 534603 chr11 135006516 + 25740145 25746443 L1PA4 6152 - 9 6150 3640 4 1 0 134 1 2 229 161 0 1144 0 1 309 0 1 402 0 9 301 0 1 1812 0 1 421 0 1 207 0 3 1038 13 0 121 chain 11176 chr11 135006516 + 25740534 25740662 L1PA4 6152 - 6 134 155536 128 chain 6374 chr11 135006516 + 25753649 25753745 L1PA10 4194 + 4058 4150 182220 24 1 0 15 0 1 6 1 0 12 3 0 34 chain 221919 chr11 135006516 + 25768697 25771173 L1PA4 6152 + 3671 6151 17760 269 0 1 242 0 1 818 0 1 1072 0 1 75 chain 3428 chr11 135006516 + 25774270 25774368 L1MA7 2200 + 1994 2083 216609 4 0 1 26 45 35 23 chain 3056 chr11 135006516 + 25778105 25778137 LTR12C 1709 + 931 963 223891 32 chain 11872 chr11 135006516 + 25778165 25778393 LTR12C 1709 + 913 1064 152732 109 77 0 42 chain 508547 chr11 135006516 + 25779599 25786001 L1PA7 6471 + 58 6466 6274 345 1 3 68 1 0 338 3 0 622 20 34 46 23 2 109 0 1 381 1 9 80 1 3 66 0 4 289 0 3 169 5 2 7 0 3 45 2 1 223 0 5 568 10 10 112 2 0 221 8 2 263 0 1 575 0 4 290 0 1 183 5 6 380 0 1 88 2 1 84 1 0 78 2 3 667 6 0 12 chain 6569 chr11 135006516 + 25790896 25790970 L1PA2 6032 + 5957 6031 180703 74 chain 29358 chr11 135006516 + 25828699 25829044 L1PA4 6152 + 5595 5941 87251 218 1 2 126 chain 18631 chr11 135006516 + 25829044 25829251 L1PA4 6152 + 5944 6151 131132 207 chain 65034 chr11 135006516 + 25836129 25836845 L1PA4 6152 - 1 717 50558 716 chain 70910 chr11 135006516 + 25836854 25837666 L1PA4 6152 + 4615 5431 47959 14 1 0 373 0 1 301 0 4 123 chain 530512 chr11 135006516 + 25852844 25858965 L1PA5 6144 + 0 6141 4130 209 1 3 552 0 1 107 0 1 346 0 1 974 0 2 1482 1 0 659 0 4 442 0 2 285 1 2 221 0 5 79 0 1 432 0 1 171 5 0 8 6 11 140 chain 39916 chr11 135006516 + 25893548 25894152 L1PA13 3608 - 123 714 69437 17 1 0 20 17 14 11 0 1 26 2 0 6 1 0 34 2 0 20 1 0 63 2 0 95 27 26 20 1 0 238 chain 131688 chr11 135006516 + 25898660 25900183 L1PA5 6144 - 9 1556 27703 180 1 0 149 0 1 247 0 1 75 0 3 143 0 2 38 1 5 136 1 15 552 chain 55456 chr11 135006516 + 25900183 25900831 L1PA5 6144 + 3391 4038 55296 484 4 3 160 chain 36757 chr11 135006516 + 25900999 25901410 L1PA5 6144 + 4184 4595 73866 411 chain 110315 chr11 135006516 + 25942798 25944360 THE1B-int 1605 - 46 1605 34120 211 0 1 519 1 10 32 125 92 175 14 15 48 23 42 414 chain 3637 chr11 135006516 + 25977668 25977716 MLT2A2 560 - 47 96 213031 8 1 0 5 0 2 34 chain 75602 chr11 135006516 + 25978134 25978999 L1PA4 6152 + 5271 6143 45713 30 0 5 387 0 1 123 0 1 325 chain 65868 chr11 135006516 + 25987722 25988507 LTR17 781 - 0 781 50159 379 3 0 75 1 0 327 chain 21563 chr11 135006516 + 26011010 26011251 L1PA4 6152 + 5910 6151 121913 241 chain 21695 chr11 135006516 + 26022669 26022941 HERV17-int 4347 + 13 280 121410 14 1 0 51 1 0 35 2 0 26 1 0 141 chain 215207 chr11 135006516 + 26023275 26025888 HERV17-int 4347 + 13 4347 18152 14 1 0 51 1 0 35 2 0 26 1 0 466 18 15 8 0 1 642 0 4 143 1 0 50 5 0 214 1 0 37 4 0 341 0 1672 112 0 63 440 chain 8876 chr11 135006516 + 26044787 26044902 MER85 139 - 0 125 166255 40 2 12 73 chain 54035 chr11 135006516 + 26050957 26051550 L1PA3long 6157 + 5562 6155 56338 593 chain 34860 chr11 135006516 + 26051676 26052097 LTR7C 471 + 0 425 76396 285 0 3 111 0 1 25 chain 9153 chr11 135006516 + 26088078 26088247 MER4C 627 + 1 187 164796 72 43 60 54 chain 27245 chr11 135006516 + 26089245 26089663 MER57A1 433 - 3 433 95448 19 1 6 83 61 64 170 0 4 84 chain 546786 chr11 135006516 + 26135060 26141191 L1PA3long 6157 + 10 6157 1855 422 3 0 758 0 3 2067 0 5 627 1 0 103 0 1 572 0 1 77 0 10 1501 chain 55403 chr11 135006516 + 26150618 26151409 L1PB1 5432 - 1107 1901 55460 139 15 19 218 2 3 126 11 15 78 6 1 168 9 8 19 chain 11807 chr11 135006516 + 26167215 26167391 L1PA4 6152 - 0 175 152996 85 2 0 19 5 6 27 6 8 6 2 0 24 chain 337207 chr11 135006516 + 26192594 26196480 L1PA4 6152 + 2257 6143 11967 355 0 1 1738 0 4 280 1 0 659 0 1 25 0 1 129 0 1 383 8 0 204 0 1 104 chain 99653 chr11 135006516 + 26205725 26206820 L1PA3long 6157 + 5061 6157 36867 1088 0 1 7 chain 11701 chr11 135006516 + 26214473 26214638 L1PA8 5853 - 0 164 153463 16 0 1 75 2 1 19 2 1 51 chain 5211 chr11 135006516 + 26216417 26216544 L1MA3 4352 - 24 142 192905 12 3 1 27 1 0 5 2 1 14 17 16 18 4 0 24 chain 14132 chr11 135006516 + 26226436 26226677 THE1C 375 - 11 259 144101 117 50 54 6 0 1 5 0 2 63 chain 153213 chr11 135006516 + 26230546 26232433 L1PA7 6471 - 6 1904 24199 6 3 0 214 5 6 101 0 1 307 0 3 125 1 3 127 1 2 60 0 2 299 0 2 222 0 1 267 0 1 149 chain 98589 chr11 135006516 + 26232434 26234512 L1P3 4156 + 2834 4136 37127 546 787 7 139 3 2 14 9 13 48 0 1 339 0 4 59 1 0 101 2 0 7 2 1 21 chain 60939 chr11 135006516 + 26232980 26233767 L1PA7 6471 + 5681 6462 52001 64 0 1 402 0 3 301 11 1 9 chain 101137 chr11 135006516 + 26254058 26255657 L1PA8 5853 + 4573 5853 36479 72 5 6 346 315 0 11 1 3 73 0 2 478 1 0 44 2 0 68 4 3 9 8 7 44 3 0 21 2 1 92 chain 23812 chr11 135006516 + 26262475 26262845 THE1B 368 + 0 368 111405 47 5 1 124 2 1 19 6 0 15 19 20 79 5 13 49 chain 16390 chr11 135006516 + 26268185 26268486 THE1B 368 + 0 308 137236 58 21 24 87 2 0 5 31 39 17 1 0 9 5 4 65 chain 12900 chr11 135006516 + 26295241 26295408 Tigger2 2703 + 1922 2088 148628 162 1 0 4 chain 23510 chr11 135006516 + 26306164 26306466 AluY 311 + 0 297 113069 118 5 0 8 1 0 64 7 8 99 chain 271609 chr11 135006516 + 26311366 26314592 L1P2 5180 - 1422 5176 15108 159 0 11 411 1 2 556 0 1 244 0 1 1360 1 0 183 1 9 28 1 0 5 2 1 121 0 2 67 0 507 86 chain 18840 chr11 135006516 + 26316850 26317087 AluY 311 + 67 307 130543 58 7 1 115 0 9 57 chain 86463 chr11 135006516 + 26333404 26334414 L1PA5 6144 - 6 1026 40981 205 0 5 630 2 7 173 chain 69896 chr11 135006516 + 26337665 26338536 MER11D 897 - 0 897 48438 176 1 4 71 0 1 24 14 37 302 1 0 282 chain 84078 chr11 135006516 + 26338844 26339810 L1PA7 6471 + 5496 6465 41867 204 1 4 761 chain 61866 chr11 135006516 + 26359725 26360490 LTR12 884 + 0 869 51963 24 1 0 31 0 107 216 2 0 491 chain 39100 chr11 135006516 + 26363127 26363641 MLT2A2 560 - 20 558 70601 187 0 7 53 0 1 61 27 43 186 chain 78181 chr11 135006516 + 26387555 26388457 L1PA5 6144 - 12 931 44423 383 1 6 85 4 14 74 0 2 355 chain 26510 chr11 135006516 + 26388457 26388751 L1PA5 6144 + 4786 5080 97658 294 chain 3998 chr11 135006516 + 26396213 26396291 MER1A 529 - 45 124 207409 13 19 20 46 chain 8004 chr11 135006516 + 26401930 26402098 MLT1A0 366 - 16 195 171033 20 10 14 86 35 42 17 chain 41520 chr11 135006516 + 26416666 26417168 L1PA7 6471 - 1344 1844 67149 172 2 0 328 chain 110989 chr11 135006516 + 26417168 26418499 L1PA7 6471 + 5136 6469 33932 223 0 2 224 0 1 35 0 3 261 8 3 248 0 2 157 4 3 171 chain 105385 chr11 135006516 + 26429512 26430676 L1PA4 6152 + 4981 6143 35401 1105 2 0 57 chain 53553 chr11 135006516 + 26435582 26436302 L1PA8 5853 + 5139 5852 56640 420 6 5 44 2 0 70 2 1 10 1 0 51 2 1 19 1 0 92 chain 15704 chr11 135006516 + 26446449 26446639 L1PA5 6144 - 13 209 139252 135 0 1 8 3 8 44 chain 22160 chr11 135006516 + 26449235 26449600 THE1C 375 - 0 365 119549 25 1 0 142 51 49 16 9 13 116 1 0 4 chain 6413 chr11 135006516 + 26459242 26459329 L1PA16 3655 - 64 148 181926 13 3 0 71 chain 29532 chr11 135006516 + 26462653 26462963 AluYa5 310 - 0 310 86523 310 chain 550630 chr11 135006516 + 26472643 26478772 L1PA3long 6157 + 0 6147 1360 553 0 1 404 0 4 227 0 3 514 0 1 1083 4 8 834 0 4 728 0 2 275 1 0 1506 chain 5938 chr11 135006516 + 26507145 26507244 L1PB4 2604 - 594 695 185796 36 8 11 12 1 0 42 chain 25029 chr11 135006516 + 26508650 26508982 THE1A 353 + 0 333 104645 110 1 0 92 1 0 108 8 11 12 chain 14821 chr11 135006516 + 26509763 26509946 THE1A-int 1579 + 442 628 141884 90 0 1 34 0 1 15 0 1 44 chain 53230 chr11 135006516 + 26509961 26510639 LTR12_ 688 - 15 688 56873 214 20 16 183 4 0 54 0 3 203 chain 9663 chr11 135006516 + 26518275 26518395 L1PB4 2604 - 60 180 162280 120 chain 3954 chr11 135006516 + 26554910 26554957 MADE1 96 + 49 96 208079 47 chain 98694 chr11 135006516 + 26561792 26562998 L1PA7 6471 + 4121 6466 37101 177 0 1128 4 0 1 126 6 12 53 1 3 24 0 1 488 0 1 327 chain 39216 chr11 135006516 + 26565008 26565468 L1PA5 6144 - 1 461 70437 460 chain 55082 chr11 135006516 + 26611977 26612742 LTR17 781 - 0 770 55656 62 12 13 305 5 14 60 1 0 72 9 8 11 1 0 29 4 5 23 1 0 23 1 0 97 1 0 48 chain 223803 chr11 135006516 + 26614199 26616866 HERV17-int 4347 - 0 4335 17665 228 2 0 379 0 1672 565 0 1 33 0 1 1216 1 0 4 0 1 108 2 1 25 2 0 35 2 1 65 chain 42815 chr11 135006516 + 26618697 26619222 LTR17 781 - 0 526 65632 62 0 1 136 0 1 254 1 0 72 chain 20800 chr11 135006516 + 26679888 26680165 AluSp 311 + 10 291 124597 70 12 14 39 0 1 146 0 1 10 chain 12443 chr11 135006516 + 26713567 26713784 MER30 238 - 0 235 150486 35 26 25 33 9 32 6 4 0 104 chain 54811 chr11 135006516 + 26731478 26732148 L1PA7 6471 - 64 754 55832 107 1 0 89 0 1 4 1 0 68 1 2 19 0 1 134 0 1 35 0 1 4 0 17 207 chain 12207 chr11 135006516 + 26750713 26750858 MER107 203 + 0 145 151392 145 chain 105060 chr11 135006516 + 26753832 26755303 THE1B-int 1605 + 129 1594 35491 33 15 8 116 0 2 142 37 21 230 58 59 11 3 4 134 5 6 101 1 2 70 0 10 352 0 1 163 chain 2734 chr11 135006516 + 26773933 26773967 MADE1 96 - 13 46 229686 4 1 0 29 chain 46887 chr11 135006516 + 26789627 26790233 PABL_A 660 - 0 653 61317 35 10 11 334 1 45 113 0 1 76 0 1 37 chain 41423 chr11 135006516 + 26795236 26795774 MLT2A2 560 - 4 558 67390 18 0 1 4 1 0 120 0 11 194 11 14 176 0 2 14 chain 406684 chr11 135006516 + 26835094 26840490 L1PB1 5432 - 13 5396 9887 15 1 0 11 0 3 20 1 0 24 2 0 13 15 12 24 14 1 15 1 0 43 2 1 16 10 9 13 0 1 29 2 0 11 6 2 9 1 0 9 1 0 24 1 0 7 16 14 280 1 9 99 0 2 71 0 3 66 0 2 181 3 1 151 0 1 16 1 0 474 14 1 193 1 4 61 0 3 71 0 1 375 1 2 29 0 5 150 2 0 254 0 2 62 0 1 30 0 1 490 0 1 153 0 4 404 13 5 22 0 7 43 5 6 30 3 4 37 3 6 212 10 5 518 2 1 137 0 1 8 2 0 362 chain 7708 chr11 135006516 + 26841650 26841743 LTR40b 463 + 370 463 172884 93 chain 5310 chr11 135006516 + 26861066 26861136 MLT1A1 405 + 319 389 191918 28 1 0 4 0 1 37 chain 53729 chr11 135006516 + 26891068 26897361 L1PB2 3958 + 243 3838 56517 196 0 2 22 14 0 163 3 4 27 0 1 150 3709 1689 67 1664 999 22 0 1 31 1 0 9 6 7 48 1 0 74 2 0 19 2 1 63 chain 924 chr11 135006516 + 26903406 26903736 THE1B-int 1605 + 1050 1380 115920 81 51 50 166 0 1 32 chain 25826 chr11 135006516 + 26905486 26905760 AluYa5 310 + 34 308 100766 274 chain 382885 chr11 135006516 + 26905763 26910196 L1PA3long 6157 + 1708 6157 10668 202 0 1 41 1 0 365 14 12 44 0 1 841 0 1 4 0 1 88 0 1 376 0 1 258 1 2 97 6 7 306 0 4 941 1 0 447 0 8 400 chain 95808 chr11 135006516 + 26910208 26911329 L1PA6 6164 + 5028 6156 37874 4 0 1 978 0 7 34 1 0 104 chain 563 chr11 135006516 + 26911398 26911599 THE1B-int 1605 + 1403 1605 115920 176 1 2 24 chain 34289 chr11 135006516 + 26923392 26923832 L1PA7 6471 + 6023 6454 77226 175 2 1 76 21 12 65 0 1 101 chain 6118 chr11 135006516 + 26929125 26929253 L1PA15 4387 - 22 155 184292 9 1 0 24 21 18 33 8 17 32 chain 82979 chr11 135006516 + 26944652 26945959 L1MA2 4263 - 150 1402 42346 7 1 0 36 19 16 7 2 0 72 23 22 147 3 0 144 1 0 11 17 9 54 17 11 40 37 0 21 0 3 89 8 7 320 1 2 22 1 2 113 8 9 5 0 1 33 7 8 41 chain 22444 chr11 135006516 + 26961532 26961854 THE1B 368 - 19 368 118276 10 4 0 49 3 0 117 2 1 27 5 25 61 0 15 44 chain 552816 chr11 135006516 + 26986665 26992681 L1PA2 6032 + 5 6029 1094 251 1 0 4926 0 4 393 0 1 379 0 4 66 chain 36006 chr11 135006516 + 26992697 26993105 L1PA5 6144 + 5729 6138 74887 81 1 2 326 chain 27698 chr11 135006516 + 26998603 26998915 L1PA5 6144 - 15 327 94050 312 chain 25079 chr11 135006516 + 26999726 27000090 L1PA8 5853 - 1 359 104412 91 5 4 16 2 1 51 1 0 65 2 1 15 8 6 40 1 0 46 0 1 21 chain 393048 chr11 135006516 + 27000499 27005680 L1PA8A 6298 - 9 6239 10353 100 5 0 5 0 6 30 1 0 318 13 11 328 0 4 655 3 0 957 1 2 94 0 6 279 14 13 82 8 9 421 0 4 138 0 1 86 0 1 6 16 6 217 7 0 372 7 5 151 9 10 42 0 1 73 7 10 79 1 4 194 10 13 75 7 1097 52 6 0 24 1 0 43 1 0 8 4 0 14 1 0 6 39 33 15 2 0 11 0 1 5 32 29 13 20 11 21 3 0 19 6 1 7 2 0 7 3 0 5 chain 21718 chr11 135006516 + 27006577 27006863 L1PA7 6471 + 6190 6468 121323 27 8 1 217 0 1 23 2 0 9 chain 18072 chr11 135006516 + 27047333 27047531 L1PA4 6152 + 5941 6139 132669 198 chain 181405 chr11 135006516 + 27064966 27067208 L1PA7 6471 - 26 2232 20857 32 21 6 54 40 4 714 0 1 6 0 5 124 1 5 381 0 4 88 0 1 200 0 1 278 1 0 302 chain 3168 chr11 135006516 + 27065073 27065110 L1PA7 6471 - 1978 2015 218236 37 chain 32954 chr11 135006516 + 27070300 27070673 L1PA2 6032 - 0 380 79287 15 0 3 36 0 4 322 chain 214744 chr11 135006516 + 27093162 27095615 L1PA5 6144 + 3676 6139 18183 392 1 0 67 8 9 463 0 1 324 0 7 406 0 2 35 0 1 516 2 1 239 chain 16254 chr11 135006516 + 27100028 27100214 L1PA7 6471 + 6111 6297 137598 186 chain 64979 chr11 135006516 + 27102834 27103586 L1PA6 6164 - 229 981 50582 752 chain 12543 chr11 135006516 + 27103618 27103785 MSTA 426 - 258 425 150072 143 1 0 4 5 6 14 chain 71193 chr11 135006516 + 27111747 27112758 MER11A 1151 - 0 1151 47849 82 2 4 77 6 7 60 0 1 36 18 0 22 44 27 145 5 6 115 0 1 29 0 1 94 0 1 43 0 73 33 4 0 66 1 0 74 0 99 55 chain 230001 chr11 135006516 + 27126228 27128909 L1P1 4361 + 570 3254 17306 567 6 8 43 4 0 365 0 2 640 0 2 96 0 1 20 1 0 109 0 3 230 1 0 512 1 0 86 chain 40188 chr11 135006516 + 27137540 27138030 L1PA7 6471 + 5982 6470 69048 332 10 8 148 chain 32241 chr11 135006516 + 27168221 27168635 L1PA8 5853 + 5437 5853 80458 58 0 8 17 0 1 43 1 0 46 2 0 69 1 0 9 6 5 47 2 1 19 1 0 93 chain 29748 chr11 135006516 + 27170456 27170861 MSTA 426 - 0 426 85662 274 21 42 110 chain 165715 chr11 135006516 + 27177518 27179409 L1P1 4361 - 1933 4360 22545 46 0 4 85 0 1 1622 6 12 41 0 525 91 chain 10780 chr11 135006516 + 27179415 27179568 MLT2A1 477 - 116 265 157076 39 1 0 57 10 7 46 chain 8146 chr11 135006516 + 27191581 27191682 L1PA16 3655 + 2477 2577 170253 88 1 0 12 chain 37772 chr11 135006516 + 27192128 27192542 L1PA4 6152 - 16 430 72458 414 chain 5498 chr11 135006516 + 27194859 27194952 L1PA16 3655 + 3490 3582 190058 52 0 2 5 12 10 19 1 0 4 chain 116613 chr11 135006516 + 27196930 27198228 L1PA4 6152 - 1 1293 32257 153 7 0 976 0 1 162 chain 6014 chr11 135006516 + 27211233 27211312 L1PB1 5432 + 5346 5422 185095 24 1 0 23 1 0 11 1 0 18 chain 27450 chr11 135006516 + 27240336 27240750 MER51B 395 + 0 395 94818 34 18 5 97 11 0 30 4 5 74 1 0 4 1 2 82 1 5 57 chain 551905 chr11 135006516 + 27241250 27247273 L1PA2 6032 + 3 6026 1203 253 1 0 5618 0 1 151 chain 4209 chr11 135006516 + 27251463 27251515 MER58C 217 + 165 216 204436 32 1 0 19 chain 481571 chr11 135006516 + 27289437 27295171 L1PA7 6471 - 1 5730 7671 11 1 2 72 16 8 8 0 8 45 10 11 167 0 1 4 1 0 507 6 5 682 0 1 375 0 3 324 0 1 103 0 1 392 20 1 117 3 2 90 1 0 31 0 1 820 0 1 43 0 1 42 0 1 418 0 5 818 1 0 4 0 1 602 chain 11405 chr11 135006516 + 27306094 27306236 L1PA16 3655 + 3432 3574 154677 142 chain 29864 chr11 135006516 + 27307881 27308202 AluYb9 318 - 0 318 85232 192 3 0 126 chain 23552 chr11 135006516 + 27312792 27313087 LTR18A 364 - 0 308 112840 134 2 15 159 chain 10850 chr11 135006516 + 27319576 27319696 L1PA5 6144 - 6 126 156781 120 chain 3038 chr11 135006516 + 27326822 27326876 MER52A 1651 + 891 1000 224260 27 0 62 13 7 0 7 chain 4934 chr11 135006516 + 27342488 27342743 LTR16B2 458 + 126 382 195890 20 39 44 14 46 45 4 1 0 18 0 2 6 1 0 7 4 0 18 52 53 25 chain 507175 chr11 135006516 + 27342848 27349139 L1PA6 6164 + 151 6162 6386 84 0 6 184 2 3 139 1 0 918 308 0 243 1 0 603 1 2 321 4 9 113 1 4 410 0 1 31 0 1 307 2 0 514 0 3 229 0 3 525 0 2 37 0 5 111 9 0 333 0 4 825 0 8 25 2 0 8 chain 69261 chr11 135006516 + 27351057 27352052 L1PA16 3655 - 63 1048 48700 11 6 3 288 6 2 152 0 1 88 1 0 61 1 4 57 49 44 193 17 16 65 chain 21597 chr11 135006516 + 27363384 27363724 THE1B 368 + 0 368 121780 39 40 73 56 4 0 6 0 2 24 2 0 93 1 0 75 chain 68459 chr11 135006516 + 27366834 27367582 L1PA4 6152 - 1 749 49065 748 chain 4728 chr11 135006516 + 27392927 27392991 MER5A1 166 - 32 101 198193 10 1 0 39 0 6 14 chain 19672 chr11 135006516 + 27467668 27467893 L1PA5 6144 - 837 1062 128191 225 chain 76186 chr11 135006516 + 27467894 27468748 L1PA5 6144 + 5296 6143 45372 839 7 0 8 chain 16996 chr11 135006516 + 27483067 27483292 MER30 238 + 0 238 135607 105 7 20 113 chain 164734 chr11 135006516 + 27556976 27559598 L1PA15 4387 - 61 2358 22692 11 3 1 41 12 9 45 3 2 9 4 0 23 2 1 38 1 0 16 1 0 25 2 1 17 0 1 111 0 1 41 1 0 39 8 6 44 18 6 26 2 0 23 5 10 127 3 0 5 0 3 128 0 4 382 0 1 187 1 2 240 320 0 147 18 19 355 11 19 97 0 4 30 chain 27132 chr11 135006516 + 27561383 27561746 THE1C 375 + 13 375 95826 158 16 16 162 1 0 26 chain 15023 chr11 135006516 + 27589877 27590219 L1PB1 5432 + 5105 5420 141261 9 3 0 33 1 0 8 8 4 9 2 0 16 0 6 30 2 1 16 1 0 38 13 11 9 1 0 7 16 6 19 2 0 4 1 0 12 3 1 26 1 0 20 2 1 13 1 0 16 chain 4098 chr11 135006516 + 27590853 27590914 MLT1A 405 - 339 404 205979 42 5 9 14 chain 77580 chr11 135006516 + 27610422 27611530 L1PA16 3655 - 474 1584 44702 86 0 3 75 1 0 76 0 4 20 11 14 71 3 4 140 14 13 74 5 10 247 13 4 37 1 0 70 1 0 41 5 4 117 chain 91234 chr11 135006516 + 27616047 27617135 L1PA7 6471 - 5 1088 39222 7 6 0 7 0 1 143 12 11 597 0 2 77 1 0 238 chain 36221 chr11 135006516 + 27650618 27651066 LTR7 482 - 0 482 74597 49 12 14 64 1 2 79 1 32 242 chain 295983 chr11 135006516 + 27652330 27656023 HERVH-int 3825 - 9 3825 13650 132 0 2 344 8 218 1320 5 6 4 1 0 74 4 31 104 8 16 342 15 0 442 0 3 57 0 19 25 21 1 38 9 7 13 22 0 9 33 6 14 4 0 9 1 0 10 1 0 38 69 0 150 0 4 155 0 11 212 chain 3785 chr11 135006516 + 27655437 27655477 HERVH-int 3825 - 3349 3389 196059 40 chain 35844 chr11 135006516 + 27656033 27656473 LTR7 482 - 8 482 75070 41 12 14 63 2 3 58 1 32 263 chain 4057 chr11 135006516 + 27657727 27657770 LTR8 732 - 42 85 206516 43 chain 15842 chr11 135006516 + 27658823 27659487 HUERS-P1-int 2401 - 1730 2221 138817 12 16 17 46 66 52 9 2 0 5 1 0 22 30 9 18 2 0 11 1 0 8 6 0 27 11 7 43 1 0 13 1 0 11 129 77 7 4 0 34 9 4 6 1 0 24 67 8 21 chain 29627 chr11 135006516 + 27668688 27669001 AluYb8 318 + 1 314 86129 313 chain 513811 chr11 135006516 + 27686848 27692864 L1PA5 6144 + 0 6144 5800 121 0 14 138 1 0 896 9 0 25 15 14 164 0 8 393 0 2 691 0 1 244 1 0 352 0 8 438 5 3 62 0 4 304 0 2 49 4 5 684 1 0 640 0 1 207 0 2 259 0 1 18 7 106 288 chain 537298 chr11 135006516 + 27703970 27710415 L1PA7 6471 - 15 6471 3276 4 1 0 836 0 2 66 1 0 8 0 1 141 0 1 373 0 1 345 0 4 7 0 1 283 1 2 261 9 10 355 0 3 249 1 0 26 1 0 161 0 1 140 1 0 282 1 5 389 1 0 297 0 1 75 8 0 373 1 0 511 0 4 344 2 1 62 1 2 350 1 0 5 0 1 62 1 2 211 1 0 182 1 2 14 chain 18683 chr11 135006516 + 27778014 27778252 L1PA8 5853 - 7 243 130990 15 0 1 70 1 0 19 2 1 61 1 0 69 chain 26141 chr11 135006516 + 27789540 27789819 AluYg6 310 - 0 279 99437 279 chain 14027 chr11 135006516 + 27789819 27790003 MLT2A2 560 - 372 556 144475 5 2 0 29 0 1 20 1 2 127 chain 60814 chr11 135006516 + 27790007 27790796 HERVL-int 5654 - 0 1099 52423 67 7 8 344 11 12 102 1 0 198 8 317 51 chain 77048 chr11 135006516 + 27796424 27797639 L1PA6 6164 + 5266 6161 44944 225 0 2 511 1 2 29 323 0 126 chain 29038 chr11 135006516 + 27797202 27797509 AluYk11 308 + 0 307 88818 307 chain 16301 chr11 135006516 + 27822234 27822417 AluYb8 318 - 0 317 137479 156 0 134 27 chain 37879 chr11 135006516 + 27822547 27823147 MER4B 649 - 15 649 72308 72 8 7 25 15 16 36 1 0 22 40 41 56 1 16 121 1 24 87 1 0 86 1 0 9 4 2 14 chain 47198 chr11 135006516 + 27846973 27847609 L1PB3 3668 - 523 1144 61048 59 26 18 63 4 0 18 2 0 323 1 0 140 chain 2719 chr11 135006516 + 27850629 27850703 L1MC4a 1092 + 731 808 229921 13 15 17 16 7 8 23 chain 12568 chr11 135006516 + 27901632 27901924 MSTD 398 + 0 398 149975 22 1 0 49 0 1 43 113 219 64 chain 40780 chr11 135006516 + 27950072 27950596 MER41A 554 - 23 552 68202 5 1 0 48 5 10 375 0 1 90 chain 96489 chr11 135006516 + 27950608 27951889 MER41-int 2638 - 2 1286 37691 223 0 5 325 0 3 171 2 0 4 0 1 19 2 1 28 1 0 44 2 0 29 13 11 6 0 1 42 5 7 48 1 0 316 chain 554670 chr11 135006516 + 27960620 27966756 L1PA3long 6157 + 5 6142 865 259 1 0 52 5 6 2689 0 1 3130 chain 19615 chr11 135006516 + 27980052 27980441 THE1D 372 + 11 371 128350 45 78 46 62 34 36 25 1 0 55 3 5 86 chain 109991 chr11 135006516 + 28022994 28024525 THE1B-int 1605 + 23 1605 34218 11 0 2 144 8 11 86 0 1 154 0 25 8 0 2 188 40 0 9 2 43 4 1 0 168 0 1 151 6 20 81 23 23 21 1 0 171 4 5 13 0 1 33 0 1 195 0 1 9 chain 23192 chr11 135006516 + 28024525 28024856 THE1B 368 + 0 356 114715 108 6 5 4 0 1 131 4 21 36 5 13 37 chain 6307 chr11 135006516 + 28040215 28040295 MADE1 96 - 0 96 182736 37 1 17 42 chain 314340 chr11 135006516 + 28049706 28053238 L1PA5 6144 + 2610 6144 12834 6 0 1 3222 0 1 304 chain 38140 chr11 135006516 + 28067330 28067747 L1PA3long 6157 + 5232 5653 71930 78 0 4 339 chain 45740 chr11 135006516 + 28067749 28068248 L1PA3long 6157 + 5653 6152 62281 499 chain 17073 chr11 135006516 + 28075057 28075264 L1PA4 6152 - 0 211 135397 6 0 5 139 2 1 60 chain 10898 chr11 135006516 + 28086021 28086147 L1PA6 6164 + 6027 6153 156594 126 chain 41073 chr11 135006516 + 28089448 28089983 L1PA8 5853 + 5328 5853 67806 150 8 4 82 1 0 44 2 0 67 9 8 57 2 1 21 1 0 91 chain 81130 chr11 135006516 + 28106430 28107399 LTR13A 966 + 0 966 43120 644 18 17 12 1 0 180 2 1 112 chain 63537 chr11 135006516 + 28108630 28109397 L1PA7 6471 - 5 765 51228 150 1 0 17 8 4 65 5 0 241 0 2 20 2 0 245 0 3 13 chain 55335 chr11 135006516 + 28123397 28124141 MER4E 760 + 0 751 55500 23 0 1 85 2 0 5 1 3 17 0 1 43 1 0 102 5 6 85 10 12 41 5 8 319 chain 2975 chr11 135006516 + 28133336 28133368 MIR 256 + 224 256 225518 32 chain 9088 chr11 135006516 + 28174840 28175025 MER2B 336 - 131 316 165129 45 44 44 64 0 4 4 4 0 24 chain 226321 chr11 135006516 + 28178671 28181432 HERVL-int 5654 + 2892 5654 17515 323 1 0 134 6 11 707 1 2 832 0 3 164 5 0 157 10 5 353 0 3 68 chain 23936 chr11 135006516 + 28181437 28181878 MLT2A1 477 + 5 477 110717 101 13 12 51 4 1 11 1 0 20 0 5 101 73 110 9 6 0 51 chain 13005 chr11 135006516 + 28190020 28190181 L1PA4 6152 - 0 167 148227 6 0 5 137 0 1 18 chain 3764 chr11 135006516 + 28195738 28195796 L1MC3 1789 - 405 454 210896 7 9 0 42 chain 53640 chr11 135006516 + 28196504 28197101 L1PA4 6152 - 9 606 56593 597 chain 271491 chr11 135006516 + 28202809 28206132 L1PA7 6471 - 1 3327 15114 11 4 7 13 2 0 5 0 2 384 0 1 42 2 0 36 0 1 347 1 0 111 0 3 737 1 0 606 0 1 4 2 1 322 0 1 266 10 9 57 1 0 359 chain 37140 chr11 135006516 + 28222763 28223266 L1P3 4156 - 17 526 73320 23 1 0 9 2 0 104 0 10 63 2 1 5 0 1 133 5 8 51 5 1 100 chain 50289 chr11 135006516 + 28226656 28230276 L1PA3long 6157 - 0 3624 8135 7 0 1 3605 0 3 8 chain 27002 chr11 135006516 + 28235197 28235501 AluYk4 311 - 7 311 96278 304 chain 524883 chr11 135006516 + 28238110 28244241 L1PA5 6144 - 0 6144 4695 843 0 4 616 16 17 1488 1 0 1389 0 1 660 13 21 1105 chain 250092 chr11 135006516 + 28255353 28258101 L1PA3long 6157 - 0 2748 16221 2748 chain 30590 chr11 135006516 + 28258101 28260303 L1PA3long 6157 - 3955 6156 8135 1173 1 0 1028 chain 23795 chr11 135006516 + 28277259 28277540 AluSp 311 - 21 302 111502 281 chain 18130 chr11 135006516 + 28287377 28287595 L1PA4 6152 - 17 238 132520 126 0 6 10 3 0 79 chain 37559 chr11 135006516 + 28287595 28288009 L1PA4 6152 + 5480 5894 72739 414 chain 84458 chr11 135006516 + 28293247 28294277 L1PA7 6471 + 5439 6469 41737 44 0 1 128 0 1 13 0 3 71 0 2 22 4 0 730 4 1 14 chain 12468 chr11 135006516 + 28296350 28296488 L1PA5 6144 + 6001 6139 150383 138 chain 16220 chr11 135006516 + 28306809 28307025 MER30 238 + 0 238 137693 115 0 23 54 3 0 9 0 2 35 chain 190576 chr11 135006516 + 28313615 28315756 L1PA4 6152 - 9 2156 19993 835 0 4 1130 0 1 124 1 2 51 chain 81293 chr11 135006516 + 28361905 28362871 L1PA7 6471 + 5493 6468 43044 124 1 4 194 0 1 315 0 1 279 1 5 52 chain 6104 chr11 135006516 + 28366426 28366596 MER33 330 - 78 269 184385 15 0 2 23 23 34 26 43 51 40 chain 29830 chr11 135006516 + 28375190 28375500 AluYb9 318 + 0 310 85353 310 chain 67976 chr11 135006516 + 28382215 28382955 L1PA3long 6157 - 8 747 49256 331 1 0 408 chain 134924 chr11 135006516 + 28388973 28390698 L1PA7 6471 + 4744 6459 27025 62 0 4 40 8 47 221 0 3 162 0 2 131 1 0 81 65 9 115 1 0 397 1 0 118 0 1 222 3 0 5 0 3 92 chain 535888 chr11 135006516 + 28394168 28400223 L1PA3long 6157 - 0 6153 3462 440 2 1 402 0 4 160 48 0 499 0 1 2146 0 2 268 5 11 760 1 2 463 0 3 91 8 136 403 0 1 210 0 1 149 chain 3237 chr11 135006516 + 28407796 28407835 L1M4c 1769 + 1688 1727 220292 39 chain 47681 chr11 135006516 + 28410238 28410782 L1PA4 6152 - 9 553 60709 544 chain 203034 chr11 135006516 + 28410788 28413038 L1PA3long 6157 - 8 2262 18989 835 0 4 1415 chain 240477 chr11 135006516 + 28417011 28419764 L1PA5 6144 + 3340 6131 16745 127 0 2 11 0 7 535 1 4 315 0 4 965 0 3 492 0 1 90 1 0 52 0 1 81 1 19 82 chain 76145 chr11 135006516 + 28427604 28428674 L1PA10 4194 - 49 1040 45395 28 4 1 12 0 1 27 2 0 89 0 31 197 0 1 23 0 2 27 110 0 481 0 1 70 chain 111734 chr11 135006516 + 28448144 28449551 L1PA11 4918 - 407 1824 33745 23 1 0 16 2 0 65 2 0 13 3 2 61 8 0 142 0 5 290 0 1 196 0 1 425 0 16 56 0 1 104 chain 14384 chr11 135006516 + 28449689 28449869 Tigger3a 397 - 78 258 143260 180 chain 161076 chr11 135006516 + 28450942 28453347 SVA_F 1814 + 10 1814 23183 776 0 40 40 99 0 15 47 0 34 430 0 22 1 0 10 0 15 178 78 0 664 1 0 10 chain 4586 chr11 135006516 + 28451797 28451857 SVA_F 1814 + 855 916 75071 31 0 2 4 1 0 24 chain 3592 chr11 135006516 + 28451872 28451919 SVA_F 1814 + 931 994 75071 16 0 15 25 0 1 6 chain 23921 chr11 135006516 + 28451953 28452266 SVA_F 1814 + 1028 1291 75071 63 49 0 183 1 0 17 chain 8938 chr11 135006516 + 28452266 28452361 SVA_F 1814 + 1165 1260 154388 95 chain 5514 chr11 135006516 + 28452594 28452672 SVA_F 1814 + 1013 1091 99960 78 chain 45534 chr11 135006516 + 28458325 28458882 MLT2A2 560 + 0 560 62473 310 1 0 240 0 4 6 chain 3158 chr11 135006516 + 28504257 28504293 MER5A 189 + 37 73 221764 36 chain 113761 chr11 135006516 + 28532964 28534443 LTR12C 1709 - 0 1709 33158 82 1 0 69 1 0 330 18 10 59 0 47 95 0 41 22 51 1 67 0 201 59 2 1 156 3 5 464 chain 44614 chr11 135006516 + 28535042 28535553 MER9a2 513 - 0 513 63465 111 0 2 400 chain 112455 chr11 135006516 + 28546352 28547895 LTR12C 1709 - 0 1709 33551 84 7 6 231 0 1 159 18 10 96 20 67 43 0 1 83 9 2 30 0 1 28 0 118 275 13 10 169 41 58 237 chain 6312 chr11 135006516 + 28577645 28577791 MLT1E3 631 - 114 262 182701 20 0 1 19 54 55 53 chain 42071 chr11 135006516 + 28589340 28589934 L1PA16 3655 + 2935 3541 66530 166 0 3 7 16 21 81 6 5 29 6 13 30 2 0 251 chain 26599 chr11 135006516 + 28636247 28636624 THE1C 375 - 0 375 97667 25 1 0 150 18 18 43 11 10 129 chain 23549 chr11 135006516 + 28637529 28637791 L1PA5 6144 - 3 265 112855 262 chain 95204 chr11 135006516 + 28660913 28661971 L1PA4 6152 - 9 1066 37961 842 1 0 215 chain 114170 chr11 135006516 + 28661971 28663230 L1PA4 6152 + 3855 5114 33041 1259 chain 462488 chr11 135006516 + 28663275 28668972 L1PA7 6471 + 687 6468 8302 55 14 19 195 12 59 8 0 10 177 0 4 38 0 19 458 4 8 315 1 3 586 25 7 448 0 4 728 0 1 184 0 1 56 1 2 4 1 0 262 0 1 29 0 1 686 0 1 88 0 4 280 0 1 192 1 0 15 0 3 602 4 0 211 1 0 16 chain 6830 chr11 135006516 + 28793000 28793090 MSTD 398 + 287 378 178720 72 0 1 18 chain 12232 chr11 135006516 + 28803364 28803505 L1PA5 6144 + 5990 6131 151292 141 chain 394772 chr11 135006516 + 28808970 28814042 L1PA8A 6298 - 10 5160 10287 98 1 2 186 0 1 401 6 7 20 0 2 78 1 4 265 0 1 140 0 1 19 1 0 197 0 24 16 8 1 152 0 3 5 0 1 9 0 16 78 0 4 249 0 1 166 8 0 261 4 5 427 0 5 44 1 0 9 2 0 24 22 21 265 1 2 113 0 3 10 1 0 30 18 49 17 31 13 176 1 2 155 0 2 604 2 1 514 4 19 232 chain 11850 chr11 135006516 + 28856730 28856884 L1PA5 6144 + 5987 6142 152826 9 1 0 7 0 3 125 1 0 11 chain 98489 chr11 135006516 + 28894919 28896016 L1PA5 6144 - 1 1098 37164 1097 chain 4234 chr11 135006516 + 28899674 28899935 Charlie6 786 + 391 624 204121 30 194 166 37 chain 55145 chr11 135006516 + 28900245 28900940 L1PA5 6144 - 0 690 55617 60 1 0 22 25 17 296 0 3 9 0 1 282 chain 116326 chr11 135006516 + 28903356 28904765 L1P1 4361 - 626 2034 32333 574 2 1 452 14 8 8 0 5 142 1 2 216 chain 198124 chr11 135006516 + 28904769 28907221 L1PA6 6164 + 3667 6156 19348 221 0 1 270 0 1 27 0 9 64 0 1 111 9 12 74 10 28 159 1 0 10 11 12 646 0 3 686 0 1 153 chain 96032 chr11 135006516 + 28912106 28913521 LTR12C 1709 + 0 1709 37811 209 0 107 22 0 43 79 6 5 8 15 0 121 8 0 29 2 3 36 0 119 56 1 0 144 78 0 90 0 47 89 24 0 17 11 4 169 0 102 86 0 10 32 1 0 82 chain 2020 chr11 135006516 + 28912850 28912891 LTR12C 1709 + 1118 1159 183513 41 chain 26986 chr11 135006516 + 28953348 28953647 L1PA3long 6157 - 0 299 96331 299 chain 78453 chr11 135006516 + 28973201 28974063 L1PA3long 6157 - 0 864 44294 112 0 1 34 0 1 716 chain 31851 chr11 135006516 + 28974063 28974409 L1PA3long 6157 + 4958 5304 80353 346 chain 32126 chr11 135006516 + 28992808 28993255 MLT2A1 477 + 0 477 80648 88 0 1 74 9 0 6 0 6 4 0 1 24 0 1 180 10 0 12 3 43 37 chain 94374 chr11 135006516 + 28998954 29000000 L1PA3long 6157 - 2 1049 38240 110 0 1 936 chain 26118 chr11 135006516 + 29000671 29000987 L1P1 4361 + 4028 4341 99535 122 1 0 155 1 0 23 2 1 12 chain 34371 chr11 135006516 + 29010609 29011148 MLT2A2 560 + 0 560 77104 84 1 0 30 1 0 49 54 53 190 0 11 8 0 1 26 0 1 7 1 7 24 37 42 27 chain 26299 chr11 135006516 + 29026480 29026822 AluY 311 + 0 311 98834 123 1 0 3 15 0 31 15 0 154 chain 3552 chr11 135006516 + 29029217 29029399 Tigger5 388 + 196 388 214523 23 125 135 34 chain 8085 chr11 135006516 + 29038095 29038191 L1PA7 6471 - 542 638 170568 96 chain 41174 chr11 135006516 + 29038191 29038738 L1PA7 6471 + 5923 6454 67675 41 15 0 116 1 2 239 5 3 130 chain 55520 chr11 135006516 + 29064290 29065162 L1PA14 3548 + 2584 3443 55404 44 2 1 59 1 0 64 1 0 76 11 20 81 12 10 14 2 0 16 0 6 25 2 0 5 2 0 24 4 5 80 4 0 17 2 0 6 1 0 84 1 0 111 1 0 9 4 0 36 5 3 13 1 0 5 1 0 16 1 0 29 chain 432332 chr11 135006516 + 29067305 29072287 L1PA5 6144 - 2 5112 9251 330 2 3 379 0 3 55 15 0 407 1 0 1107 0 1 605 0 5 76 0 1 584 0 120 453 0 10 860 0 3 108 chain 85483 chr11 135006516 + 29072289 29073331 L1PA5 6144 + 5 1043 41353 115 14 0 14 3 17 308 0 1 573 1 0 3 4 0 7 chain 37823 chr11 135006516 + 29075818 29076318 L1PA7 6471 - 508 1006 72378 65 1 0 195 0 1 74 15 13 150 chain 36931 chr11 135006516 + 29076347 29076809 L1PA7 6471 + 6002 6464 73612 462 chain 360000 chr11 135006516 + 29092314 29097510 L1PB1 5432 - 12 5358 11364 16 1 0 13 1 0 21 1 0 24 71 65 60 2 1 24 8 27 11 60 56 49 2 1 5 0 1 231 3 11 22 10 9 51 12 6 77 29 30 440 1 16 317 0 2 84 0 160 384 1 0 10 1 0 354 2 1 15 0 1 64 25 24 81 0 1 63 4 0 97 1 0 82 2 1 142 0 3 82 3 1 279 0 3 35 51 0 241 20 25 183 7 8 8 13 0 7 1 0 98 0 1 135 1 2 103 1 2 181 0 9 83 0 1 162 0 1 4 1 0 11 15 10 41 8 8 360 0 18 30 8 11 50 chain 123551 chr11 135006516 + 29099429 29100994 THE1A-int 1579 + 2 1574 29859 167 3 1 7 1 0 155 3 1 353 1 0 113 0 9 177 5 6 72 1 0 50 7 11 450 chain 23052 chr11 135006516 + 29101006 29101355 THE1A 353 + 7 353 115383 6 2 0 67 1 0 4 0 1 25 1 0 92 33 33 118 chain 17504 chr11 135006516 + 29105880 29106173 AluY 311 + 13 302 134251 63 1 7 49 35 11 84 14 28 47 chain 21140 chr11 135006516 + 29124188 29124464 AluSg7 307 - 10 297 123410 27 3 4 22 0 2 28 3 10 72 0 1 121 chain 82293 chr11 135006516 + 29126400 29127626 MER11A 1151 + 0 1151 42628 19 135 36 121 8 0 23 2 0 31 1 0 64 0 2 16 1 2 191 13 11 168 6 7 117 0 1 12 5 38 226 1 0 66 chain 2449 chr11 135006516 + 29126455 29126516 MER11A 1151 + 154 205 233710 24 15 7 14 2 0 6 chain 25552 chr11 135006516 + 29132989 29133295 L1PA7 6471 - 1 307 101971 4 1 0 157 0 1 144 chain 38709 chr11 135006516 + 29133296 29133759 L1PA7 6471 + 5682 6148 71141 245 0 2 207 0 1 11 chain 27112 chr11 135006516 + 29136368 29136799 MLT2A1 477 - 0 477 95895 20 1 0 21 3 44 177 21 20 20 9 13 19 3 4 86 7 9 44 chain 49833 chr11 135006516 + 29164779 29165316 L1HS 6032 + 5357 5894 59130 537 chain 145178 chr11 135006516 + 29175587 29177141 L1HS 6032 - 11 1565 25295 1554 chain 73207 chr11 135006516 + 29177141 29177920 L1HS 6032 + 1662 2441 46744 779 chain 467517 chr11 135006516 + 29240596 29246849 L1PA8A 6298 - 7 6266 8129 132 4 6 176 7 6 65 3 2 331 5 3 70 11 21 88 0 2 4 0 1 287 0 2 264 10 6 420 8 50 132 0 2 349 1 3 323 1 0 93 2 0 5 6 8 13 0 1 34 5 2 24 5 1 69 0 1 794 3 1 128 0 2 516 0 1 515 0 1 200 4 0 42 0 4 23 5 7 133 7 8 218 0 2 96 1 0 92 1 0 75 8 6 9 2 1 14 2 0 79 38 30 33 1 0 8 30 37 11 8 5 15 2 0 12 1 0 7 32 29 10 3 2 6 9 0 4 7 0 19 3 0 21 6 1 7 2 0 7 3 0 5 2 1 18 1 0 8 chain 23105 chr11 135006516 + 29269323 29269588 L1PA2 6032 + 5767 6032 115114 265 chain 83482 chr11 135006516 + 29274541 29275482 L1PA3long 6157 + 5210 6157 42124 97 0 2 593 1 5 250 chain 2256 chr11 135006516 + 29289016 29289040 L1PA3long 6157 + 5799 5823 235903 24 chain 29154 chr11 135006516 + 29289040 29289374 L1PA3long 6157 + 5824 6157 88292 185 0 1 142 2 0 5 chain 12089 chr11 135006516 + 29307015 29307196 Tigger3a 397 - 73 258 151842 6 0 3 94 5 0 6 8 13 49 0 1 13 chain 66792 chr11 135006516 + 29309345 29310089 L1PA4 6152 - 9 753 49737 744 chain 55593 chr11 135006516 + 29310089 29310713 L1P1 4361 + 3582 4206 55206 101 0 1 466 1 0 56 chain 6381 chr11 135006516 + 29311241 29311317 L1PA6 6164 - 166 242 182173 76 chain 4468 chr11 135006516 + 29337404 29337454 LTR65 659 - 274 324 201133 50 chain 243219 chr11 135006516 + 29376993 29379833 L1PA5 6144 - 18 2851 16605 122 0 1 118 1 0 200 25 17 302 3 6 578 0 2 583 0 1 523 1 0 60 13 10 273 1 0 37 chain 76904 chr11 135006516 + 29383693 29384595 L1PA5 6144 - 3 894 45026 6 4 0 131 0 1 172 1 0 356 5 1 175 4 0 27 0 1 21 chain 318061 chr11 135006516 + 29390365 29394036 L1PA4 6152 - 11 3683 12670 128 1 8 1213 0 2 293 0 4 497 4 0 710 4 1 120 1 0 290 5 1 405 chain 49609 chr11 135006516 + 29401004 29401555 L1PA4 6152 + 5601 6152 59313 551 chain 168443 chr11 135006516 + 29406380 29408246 L1PA4 6152 - 1 1869 22228 1359 0 2 507 chain 281663 chr11 135006516 + 29420079 29423262 L1PA4 6152 + 2954 6143 14554 982 0 1 303 0 1 424 1 0 153 1 2 484 0 4 835 chain 44171 chr11 135006516 + 29436921 29437453 L1PA7 6471 - 60 591 63984 99 1 0 432 chain 494342 chr11 135006516 + 29437672 29443175 L1PA3long 6157 + 2 6155 7150 5 3 0 87 0 526 156 0 128 2784 2 1 2466 chain 13550 chr11 135006516 + 29445534 29445700 Tigger3a 397 + 152 318 146171 166 chain 69134 chr11 135006516 + 29449873 29450718 L1PA4 6152 - 0 858 48745 113 6 7 42 33 35 644 0 10 7 chain 23613 chr11 135006516 + 29452904 29453181 AluSp 311 - 25 300 112508 13 1 0 153 1 0 109 chain 26608 chr11 135006516 + 29455163 29455472 AluYf4 310 + 0 305 97629 118 4 0 187 chain 23193 chr11 135006516 + 29463174 29463534 THE1B 368 + 0 365 114706 61 6 9 99 1 0 32 0 1 5 9 13 10 1 0 10 1 0 66 1 0 4 17 18 37 chain 13270 chr11 135006516 + 29510685 29511268 THE1B 368 + 70 336 147211 48 4 5 46 1 0 11 346 36 16 1 0 7 10 4 63 1 0 4 2 3 23 chain 21592 chr11 135006516 + 29512778 29513213 MLT2A2 560 + 2 560 121800 141 81 89 63 9 118 16 29 0 8 6 41 82 chain 3148 chr11 135006516 + 29576875 29576912 MADE1 96 + 5 42 221960 37 chain 31442 chr11 135006516 + 29588871 29589253 L1PA7 6471 - 1 382 81744 14 1 0 367 chain 107909 chr11 135006516 + 29620973 29622258 LTR12C 1709 - 0 1709 34751 167 0 102 212 0 4 107 2 0 5 2 320 330 0 1 32 0 1 428 chain 193272 chr11 135006516 + 29669592 29671719 L1PA3long 6157 + 4022 6150 19750 1801 1 2 325 chain 118043 chr11 135006516 + 29684809 29686237 L1PA6 6164 + 4717 6151 31726 162 12 6 158 0 1 252 0 4 18 0 4 508 0 3 318 chain 345708 chr11 135006516 + 29686237 29690348 L1PA6 6164 + 2039 6162 11736 286 6 0 215 0 3 250 0 4 382 17 11 50 0 4 22 0 4 215 0 1 21 0 4 966 0 1 34 0 4 402 0 1 396 2 0 80 0 1 656 1 0 110 chain 10524 chr11 135006516 + 29715200 29715379 MER57E1 380 + 39 223 158153 107 34 0 11 0 39 27 chain 305457 chr11 135006516 + 29715394 29719887 L1PB1 5432 - 10 4508 13190 10 1 0 7 2 1 12 2 1 21 1 0 23 3 1 14 1 0 5 39 27 4 1 0 16 1 0 44 22 20 48 17 12 13 1 0 9 60 31 101 1 75 115 1 2 119 0 1 75 2 6 78 10 14 550 32 1 140 0 1 62 2 0 25 29 17 93 16 32 548 42 49 26 0 1 130 1 0 16 3 0 39 0 1 8 21 25 70 3 0 16 0 1 171 1 3 221 4 9 130 15 19 195 0 4 209 4 5 137 15 17 48 18 5 82 0 1 156 13 7 102 0 1 103 1 0 117 chain 5601 chr11 135006516 + 29721986 29722055 MER57B2 428 - 352 421 189076 69 chain 84633 chr11 135006516 + 29725907 29726955 MER11B 1079 + 0 1063 41669 146 0 1 112 3 0 87 0 1 112 9 31 282 8 2 289 chain 15441 chr11 135006516 + 29734671 29734977 LTR12C 1709 + 932 1203 140076 139 0 47 40 108 26 19 chain 4100 chr11 135006516 + 29734978 29735096 LTR12C 1709 + 837 996 178086 38 38 79 42 chain 118653 chr11 135006516 + 29738064 29739624 THE1B-int 1605 - 5 1605 31552 74 0 1 117 1 9 314 11 12 368 32 35 213 0 25 360 6 8 64 chain 18903 chr11 135006516 + 29739624 29739946 THE1B 368 - 0 365 130357 125 51 61 14 2 0 82 8 42 14 0 1 26 chain 30017 chr11 135006516 + 29748285 29748603 AluYb8 318 + 0 318 84746 318 chain 51677 chr11 135006516 + 29765174 29765736 L1PA3long 6157 - 5 567 57839 562 chain 5730 chr11 135006516 + 29783716 29783784 MLT1C 463 + 348 416 187835 68 chain 539212 chr11 135006516 + 29787217 29793361 L1PA4 6152 - 0 6146 2945 1887 0 3 582 2 0 283 0 6 959 0 3 111 1 0 158 3 0 916 1 0 57 8 1 144 0 1 608 0 1 171 0 2 253 chain 78574 chr11 135006516 + 29808634 29809529 L1PA3long 6157 - 4 899 44233 137 3 1 656 0 3 56 1 0 42 chain 141149 chr11 135006516 + 29809533 29811083 L1PA3long 6157 + 3710 5268 25963 532 0 8 1018 chain 463844 chr11 135006516 + 29816007 29821331 L1PA3long 6157 + 0 6157 8264 703 1 0 4 7 15 120 17 0 146 5 6 1470 0 1 1302 0 1 589 0 4 89 0 829 730 1 8 140 chain 108142 chr11 135006516 + 29851720 29855595 L1PA10 4194 + 2549 4151 34676 5 0 1 53 10 10 9 3 0 19 8 9 6 0 4 29 0 4 12 0 1 4 0 3 8 0 2 82 1 11 139 0 3 39 5 8 331 2309 0 176 3 4 24 0 3 151 21 25 9 0 2 46 26 26 310 3 0 34 chain 54948 chr11 135006516 + 29890224 29890832 L1PA4 6152 - 768 1375 55623 90 1 0 517 chain 69157 chr11 135006516 + 29890832 29891595 L1PA4 6152 + 5380 6150 48735 626 0 7 137 chain 50273 chr11 135006516 + 29920565 29921130 L1PA4 6152 + 5575 6140 58806 565 chain 34941 chr11 135006516 + 29922412 29922840 L1PA7 6471 - 12 444 76276 19 0 5 103 1 0 305 chain 18791 chr11 135006516 + 29926150 29926360 L1PA4 6152 + 5780 5990 130707 210 chain 12660 chr11 135006516 + 29926361 29926499 L1PA4 6152 + 6005 6143 149604 138 chain 23857 chr11 135006516 + 29931420 29931770 L1PA8 5853 + 5483 5853 111143 81 1 0 43 7 5 34 8 0 8 4 37 48 3 2 14 6 5 93 chain 97004 chr11 135006516 + 29972941 29974618 L1PA13 3608 + 117 1817 37564 18 13 10 18 1 0 12 4 5 21 114 104 26 11 10 75 1 0 12 1 0 8 10 8 17 6 2 18 1 0 17 8 6 12 2 0 15 18 17 27 0 5 51 6 4 87 23 21 97 1 4 66 5 7 128 0 2 33 0 2 61 4 40 8 1 0 35 2 0 5 0 2 33 0 4 180 16 15 14 17 20 318 chain 28928 chr11 135006516 + 29994734 29995165 LTR7 482 - 8 482 89335 90 5 11 16 6 12 80 9 41 109 15 14 101 chain 12501 chr11 135006516 + 29995168 29995329 LTR7Y 441 + 258 427 150235 7 1 0 37 0 6 15 0 1 19 0 2 82 chain 248505 chr11 135006516 + 29995343 29998877 HERVH-int 3825 + 0 3717 16336 202 0 2 77 0 2 33 29 28 20 15 16 77 3 64 9 1 0 11 0 209 30 2 0 7 3 8 50 0 3 60 326 4 208 0 1 15 1 0 643 0 1 173 0 4 183 0 4 105 0 1 76 0 3 408 1 0 132 0 2 73 0 2 146 1 4 24 8 218 36 0 1 332 4 0 10 chain 29121 chr11 135006516 + 29995980 29996293 AluYb8 318 - 5 318 88454 313 chain 2702 chr11 135006516 + 30046068 30046176 Tigger4a 237 - 115 223 230220 22 65 65 21 chain 28918 chr11 135006516 + 30048138 30048446 AluYa5 310 + 0 307 89384 132 1 0 175 chain 47775 chr11 135006516 + 30055898 30056508 THE1B-int 1605 - 953 1588 60638 47 1 0 4 0 1 143 0 25 256 1 0 4 1 2 153 chain 5322 chr11 135006516 + 30063232 30063292 MER67D 511 + 76 136 191810 60 chain 34301 chr11 135006516 + 30063301 30063733 MER57A1 433 - 0 433 77210 150 0 1 282 chain 540229 chr11 135006516 + 30072756 30078779 L1PA3long 6157 - 0 6157 2785 167 0 3 1511 0 2 3273 1 2 153 1 0 142 8 136 615 1 2 151 chain 113162 chr11 135006516 + 30079514 30080774 L1PA4 6152 + 4887 6152 33330 177 0 7 1076 2 0 5 chain 452826 chr11 135006516 + 30083939 30089305 L1PA6 6164 - 2 6164 8661 150 0 749 25 0 1 4 1 0 114 0 1 19 0 1 400 0 1 822 0 1 177 0 1 172 0 1 325 1 2 291 0 1 133 1 0 254 0 1 182 0 1 886 0 1 295 11 28 299 0 17 170 3 4 66 1 0 48 0 2 278 0 2 220 7 6 11 chain 6906 chr11 135006516 + 30089805 30089923 LTR54 533 + 412 533 178142 57 8 9 21 7 9 25 chain 21743 chr11 135006516 + 30117227 30117532 L1PA10 4194 - 33 336 121232 10 1 0 11 1 2 21 8 6 253 chain 130124 chr11 135006516 + 30123784 30125236 L1PA4 6152 + 4698 6151 28063 1429 0 1 23 chain 40443 chr11 135006516 + 30125251 30125765 L1PA7 6471 + 5951 6465 68672 122 2 4 238 3 0 5 1 2 143 chain 3142 chr11 135006516 + 30157772 30157829 MLT2C1 407 + 43 108 222163 32 11 19 14 chain 67537 chr11 135006516 + 30161455 30162193 L1PA4 6152 - 14 752 49423 738 chain 533979 chr11 135006516 + 30199977 30206156 L1PA4 6152 + 3 6152 3704 102 0 1 200 14 15 139 6 0 120 1 0 225 0 10 172 32 1 248 1 0 1311 0 1 1037 1 0 1715 0 1 845 4 0 6 chain 15262 chr11 135006516 + 30213134 30213489 THE1B 368 - 0 368 140596 124 1 0 5 14 28 11 0 1 4 118 114 13 1 4 64 chain 10517 chr11 135006516 + 30217272 30217401 MER85 139 + 0 139 158175 92 0 10 37 chain 43695 chr11 135006516 + 30220745 30221225 L1PA2 6032 - 11 491 64573 480 chain 16829 chr11 135006516 + 30221252 30221432 L1PA2 6032 + 5367 5547 136042 180 chain 23996 chr11 135006516 + 30236032 30236428 L1PA15 4387 - 98 487 110355 19 17 14 39 20 15 17 1 0 39 17 16 10 0 5 11 1 0 172 1 0 32 chain 22705 chr11 135006516 + 30241251 30241537 L1PA7 6471 - 7 303 117052 193 0 10 93 chain 3097 chr11 135006516 + 30262485 30262523 MLT1J1 437 + 394 432 222989 38 chain 37159 chr11 135006516 + 30264199 30264732 MLT2A2 560 + 0 537 73298 60 0 1 244 31 0 6 12 35 54 4 15 122 chain 24053 chr11 135006516 + 30269374 30269736 THE1B 368 - 0 368 110028 9 0 4 20 30 29 64 1 0 28 4 8 4 0 1 30 1 0 171 chain 41132 chr11 135006516 + 30274386 30274837 L1PA2 6032 + 5578 6030 67741 440 0 1 11 chain 543962 chr11 135006516 + 30284690 30290834 L1PA4 6152 - 1 6152 2218 1492 1 0 657 0 2 59 0 1 676 1 6 711 0 1 1503 0 2 461 1 0 120 6 0 213 1 5 242 chain 4994 chr11 135006516 + 30306522 30306600 MADE1 96 - 0 96 195208 21 11 29 46 chain 2997 chr11 135006516 + 30404952 30404986 MADE1 96 - 57 91 225088 34 chain 4361 chr11 135006516 + 30462420 30462578 MER103C 291 + 3 188 202443 17 66 92 43 16 17 16 chain 26241 chr11 135006516 + 30480461 30480741 AluYa5 310 - 0 278 99048 217 2 0 61 chain 24679 chr11 135006516 + 30514681 30514939 AluYd8 298 + 33 291 106559 258 chain 10641 chr11 135006516 + 30516431 30516599 MER2 342 + 164 336 157645 113 21 24 9 0 1 25 chain 13590 chr11 135006516 + 30545168 30545323 AluSp 311 - 6 161 146012 155 chain 11073 chr11 135006516 + 30645504 30645625 AluY 311 + 10 131 155919 121 chain 40238 chr11 135006516 + 30661501 30662045 MER41A 554 + 0 554 68963 87 27 30 248 0 8 164 1 0 17 chain 16500 chr11 135006516 + 30665482 30665675 PABL_A-int 1935 + 1630 1822 136920 97 1 0 95 chain 30474 chr11 135006516 + 30666467 30666888 MER41A 554 + 0 427 83482 87 5 6 116 11 13 172 13 16 17 chain 539368 chr11 135006516 + 30695152 30701495 L1PA4 6152 + 0 6152 2915 420 5 10 150 1 0 664 2 1 1068 0 1 69 0 1 43 8 5 566 199 6 194 0 1 1784 2 1 36 0 1 458 2 1 672 chain 17565 chr11 135006516 + 30698148 30698344 L1PA4 6152 + 4549 4745 134083 196 chain 307848 chr11 135006516 + 30709987 30714534 L1PA11 4918 + 8 4517 13096 8 0 3 11 1 0 12 2 0 36 10 7 30 0 2 11 2 0 52 1 0 33 2 0 5 2 1 351 0 1 282 143 430 165 0 1 75 2 0 23 8 0 26 0 8 11 9 21 149 1 4 47 0 1 13 4 6 143 0 4 267 1 0 11 303 9 74 30 2 138 3 4 260 10 12 132 1 0 777 1 0 154 0 3 488 13 4 21 5 1 56 2 1 80 2 0 13 2 1 20 4 0 9 chain 26396 chr11 135006516 + 30722262 30722643 THE1C 375 - 0 375 98427 25 1 0 39 1 0 53 0 3 22 4 7 6 3 0 100 3 0 16 5 1 103 chain 20725 chr11 135006516 + 30759787 30760018 L1PA2 6032 - 0 239 124877 150 0 8 81 chain 25966 chr11 135006516 + 30760018 30760299 L1PA2 6032 + 5500 5781 100148 281 chain 6846 chr11 135006516 + 30794046 30794161 MLT1A 405 - 0 115 178619 31 12 13 27 1 0 44 chain 142244 chr11 135006516 + 30827319 30829139 L1PA8 5853 - 0 1811 25767 112 2 1 52 2 1 8 2 1 69 3 1 32 17 16 155 3 0 396 0 2 8 8 5 117 1 0 162 1 0 139 1 0 92 0 1 50 7 9 54 0 1 327 chain 5571 chr11 135006516 + 30830526 30830635 MER3 215 - 102 215 189358 54 32 36 23 chain 7813 chr11 135006516 + 30876633 30876727 MSTD 398 + 304 398 172228 94 chain 7347 chr11 135006516 + 30903995 30904078 L1PA6 6164 - 3 86 175116 83 chain 23666 chr11 135006516 + 30918864 30919152 AluY 311 + 11 305 112222 132 6 12 150 chain 4036 chr11 135006516 + 30955238 30955285 LTR71A 459 - 0 47 206838 47 chain 5979 chr11 135006516 + 30959820 30959900 LTR18B 584 - 244 322 185437 24 1 0 40 1 0 14 chain 175643 chr11 135006516 + 30969489 30971559 L1PA7 6471 + 4399 6468 21382 50 2 1 4 1 0 988 0 1 177 2 1 699 0 1 147 chain 38021 chr11 135006516 + 30971559 30972178 L1MA4 2864 + 2032 2627 71516 86 1 0 72 62 46 98 3 0 85 16 7 62 13 18 121 chain 166826 chr11 135006516 + 30987151 30988938 L1HS 6032 - 4 1791 22415 1787 chain 11502 chr11 135006516 + 30988938 30989060 L1HS 6032 + 4101 4223 151564 122 chain 22645 chr11 135006516 + 31025963 31026251 AluY 311 + 25 305 117352 101 9 0 73 4 5 101 chain 6187 chr11 135006516 + 31055325 31055397 Tigger3b 1229 + 493 568 183685 57 0 3 15 chain 14016 chr11 135006516 + 31059584 31059760 L1PA5 6144 + 5947 6130 144524 34 4 9 64 0 2 74 chain 398938 chr11 135006516 + 31072119 31077504 L1PB1 5432 + 19 5391 10140 29 7 8 201 0 1 7 0 21 196 0 1 123 0 5 5 0 2 117 0 2 539 0 1 118 1 0 7 2 0 5 58 42 703 0 19 330 1 0 85 1 0 5 0 2 65 7 9 241 0 1 226 0 8 409 1 0 174 2 0 6 1 0 4 12 1 311 8 12 325 5 4 237 3 0 31 4 8 147 1 4 77 25 4 20 0 1 182 10 9 5 1 0 24 2 0 9 16 11 9 2 0 45 1 0 8 2 1 16 1 0 35 0 3 5 1 0 16 3 0 8 13 4 19 8 5 14 3 1 23 1 0 21 chain 58569 chr11 135006516 + 31116341 31117019 L1PA7 6471 - 3 685 53661 11 3 0 315 0 6 201 0 1 148 chain 35251 chr11 135006516 + 31134843 31135251 L1PA5 6144 - 0 413 75860 13 0 5 395 chain 4410 chr11 135006516 + 31142034 31142090 Arthur1C 363 + 219 275 201811 56 chain 10092 chr11 135006516 + 31145893 31146039 L1PA10 4194 + 4000 4143 160127 117 11 8 18 chain 29645 chr11 135006516 + 31152447 31152760 AluYb8 318 + 0 313 86089 313 chain 2027 chr11 135006516 + 31170668 31170789 L1PB2 3958 - 123 264 136074 31 6 30 21 4 0 59 chain 54642 chr11 135006516 + 31170790 31171496 LTR12_ 688 + 0 688 55941 25 1 0 117 5 6 121 18 0 419 chain 2898 chr11 135006516 + 31171499 31171672 L1PB2 3958 - 264 434 136074 13 1 0 63 1 0 48 26 25 21 chain 3315 chr11 135006516 + 31176856 31176899 MIRb 242 - 8 52 218669 38 0 1 5 chain 29062 chr11 135006516 + 31190495 31190878 L1PA8A 6298 + 5895 6279 88716 295 28 29 60 chain 405082 chr11 135006516 + 31201950 31206966 L1PA7 6471 + 0 6470 9942 410 12 0 977 0 129 39 1 0 179 20 19 276 0 15 276 32 10 532 0 1 26 0 4 187 0 3 129 0 1311 146 0 8 143 12 3 368 1 0 394 0 16 21 0 2 35 0 2 48 0 1 186 1 9 565 chain 26168 chr11 135006516 + 31245412 31245772 THE1A 353 + 0 353 99332 4 0 1 21 0 1 25 9 6 23 9 4 26 1 0 242 chain 59573 chr11 135006516 + 31245821 31246694 L1PB2 3958 + 2982 3838 53065 216 0 9 12 5 1 87 2 0 54 1 0 13 5 0 65 2 0 13 5 0 86 1 0 39 19 21 19 1 0 53 3 1 10 2 1 30 2 1 40 2 0 22 1 0 63 chain 3736 chr11 135006516 + 31251783 31251828 L1MB2 1706 + 1642 1687 211366 45 chain 38337 chr11 135006516 + 31289943 31290466 L1PA16 3655 - 77 602 71670 120 1 0 168 2 0 30 12 13 43 0 4 80 0 1 31 1 0 35 chain 23554 chr11 135006516 + 31293209 31293873 THE1B 368 - 0 368 112827 192 345 34 77 6 21 44 chain 8983 chr11 135006516 + 31299859 31300010 L1MA8 2339 + 1933 2081 165698 15 23 21 40 1 0 72 chain 38488 chr11 135006516 + 31300974 31301435 L1PA7 6471 + 5995 6462 71455 136 1 0 42 0 7 282 chain 15611 chr11 135006516 + 31303122 31303481 THE1B 368 + 0 368 139546 15 2 0 32 0 1 13 5 22 8 14 0 20 5 6 60 91 97 94 chain 2862 chr11 135006516 + 31314762 31314841 LTR33A_ 513 - 1 81 227657 30 33 34 16 chain 13028 chr11 135006516 + 31317967 31318144 THE1C-int 1605 - 1370 1605 148144 25 0 54 102 0 3 33 1 2 16 chain 565881 chr11 135006516 + 31337201 31343227 L1HS 6032 - 0 6031 165 392 0 1 3373 0 4 2261 chain 22458 chr11 135006516 + 31348710 31349001 AluSp 311 - 7 296 118207 152 1 4 6 3 0 10 2 0 117 chain 518276 chr11 135006516 + 31350942 31357083 L1PA6 6164 - 2 6164 5349 12 3 0 20 4 0 109 2 0 702 0 3 667 0 1 16 0 4 38 0 1 68 1 4 147 1 9 391 0 2 62 0 2 208 1 0 506 0 1 4 2 3 431 2 0 518 0 2 17 0 2 493 0 1 1049 0 1 149 40 42 12 6 5 460 chain 303886 chr11 135006516 + 31377803 31381130 L1PA3long 6157 + 2813 6146 13250 1690 0 1 806 0 4 81 0 1 750 chain 13318 chr11 135006516 + 31381932 31382236 MER44A 345 - 23 345 147016 15 1 0 17 10 6 4 1 0 38 0 1 58 1 0 48 0 1 9 84 107 18 chain 68701 chr11 135006516 + 31410465 31411582 L1MA3 4352 + 0 1111 48943 14 9 8 15 1 0 76 0 1 37 5 4 20 1 0 103 10 15 10 6 4 68 0 5 38 7 0 7 11 10 57 0 4 6 0 3 59 13 8 131 0 4 18 1 0 20 4 0 21 8 6 77 23 22 4 1 0 54 0 2 110 6 5 27 9 8 30 chain 9200 chr11 135006516 + 31415210 31415333 MLT1A1 405 + 284 405 164557 48 2 1 60 1 0 12 chain 45185 chr11 135006516 + 31421304 31421899 L1PA8 5853 - 0 591 62839 93 1 0 19 2 1 37 17 16 8 1 0 71 2 0 43 2 1 129 0 1 21 0 1 7 0 1 142 chain 75730 chr11 135006516 + 31421900 31422839 L1PA8 5853 + 4321 5261 45632 49 1 0 640 3 1 71 0 2 52 1 4 29 9 8 84 chain 43694 chr11 135006516 + 31425325 31425854 MER41A 554 - 0 533 64574 81 0 5 366 1 0 81 chain 5194 chr11 135006516 + 31457018 31457102 MADE1 96 + 0 96 193099 34 10 22 40 chain 3610 chr11 135006516 + 31468430 31468581 MER3 215 + 52 215 213476 23 95 107 33 chain 17676 chr11 135006516 + 31492129 31492397 L1MA5 2750 + 2394 2661 133756 140 9 12 16 1 0 66 6 5 13 1 0 11 1 0 4 chain 3876 chr11 135006516 + 31494338 31494383 MIR 256 - 55 100 209209 45 chain 113711 chr11 135006516 + 31515083 31516932 THE1C-int 1605 - 11 1568 33170 842 6 0 9 41 40 29 10 16 11 3 4 12 13 23 121 310 0 35 10 17 114 0 1 283 chain 21862 chr11 135006516 + 31528549 31528843 AluY 311 + 5 299 120774 127 6 7 68 10 9 83 chain 22770 chr11 135006516 + 31554912 31555234 AluYk4 311 - 0 311 116728 98 0 32 9 32 0 41 10 0 13 1 0 118 chain 550523 chr11 135006516 + 31565558 31571688 L1PA3long 6157 + 0 6157 1372 1054 0 16 120 0 3 2977 0 1 101 0 1 1630 0 1 102 1 2 94 0 4 51 chain 144495 chr11 135006516 + 31585928 31587580 L1PA5 6144 - 0 1660 25399 147 7 8 303 0 2 383 0 4 605 0 1 207 chain 484807 chr11 135006516 + 31595740 31601483 L1PA5 6144 + 387 6135 7564 125 0 1 109 0 1 186 17 0 9 0 17 139 0 2 194 9 0 1994 4 3 75 1 7 24 6 8 390 9 0 670 0 4 124 15 17 205 0 1 593 0 1 7 1 5 837 chain 4190 chr11 135006516 + 31611647 31611693 MADE1 96 - 50 96 204691 46 chain 301143 chr11 135006516 + 31714714 31718182 L1PA5 6144 - 6 3468 13365 150 1 0 233 2 0 1132 0 1 48 0 2 227 0 4 388 3 2 274 9 0 1001 chain 51462 chr11 135006516 + 31718182 31718754 L1PA5 6144 + 1952 2525 57996 38 0 1 534 chain 31542 chr11 135006516 + 31725843 31726195 L1PA5 6144 + 5792 6144 81580 352 chain 186574 chr11 135006516 + 31756940 31759026 L1PA4 6152 + 4056 6151 20372 1425 0 10 327 1 0 333 chain 544271 chr11 135006516 + 31762301 31768441 L1PA4 6152 + 0 6146 2174 453 15 9 118 1 0 1084 8 4 718 0 4 683 0 1 57 1 6 554 0 2 5 0 1 1605 0 4 838 chain 15138 chr11 135006516 + 31850279 31850460 L1PA3long 6157 - 0 184 140953 7 0 1 138 0 2 36 chain 12676 chr11 135006516 + 31910858 31911079 MER30 238 - 0 238 149549 38 3 0 34 28 52 6 5 0 62 0 1 4 1 0 32 0 1 8 chain 28439 chr11 135006516 + 31916727 31917042 AluYf4 310 - 0 310 91426 178 5 0 132 chain 36082 chr11 135006516 + 31920538 31920971 L1PA7 6471 - 4 427 74784 116 9 0 38 1 0 269 chain 11062 chr11 135006516 + 31927206 31927554 L1MC1 2226 - 77 398 155955 13 1 0 7 20 10 15 28 21 28 28 32 31 3 1 11 24 21 45 1 0 23 10 4 28 20 19 12 chain 58655 chr11 135006516 + 31929725 31930384 L1PA4 6152 + 3339 3999 53602 511 0 1 148 chain 193055 chr11 135006516 + 31930384 31932523 L1PA4 6152 + 4002 6142 19763 1570 1 2 568 chain 19831 chr11 135006516 + 31948432 31948802 THE1D 372 + 0 372 127710 43 12 0 94 77 84 17 2 8 43 0 2 45 2 1 35 chain 64079 chr11 135006516 + 31992577 31993295 SVA_C 1631 - 0 1319 50976 17 4 0 516 0 605 181 chain 7225 chr11 135006516 + 31998451 31998539 L1PA8 5853 + 5765 5853 175915 88 chain 31090 chr11 135006516 + 32041236 32041595 L1PA4 6152 - 0 377 82364 11 0 6 114 0 12 234 chain 42044 chr11 135006516 + 32042764 32043222 L1PA3long 6157 + 5683 6142 66570 319 0 1 139 chain 17162 chr11 135006516 + 32064345 32064543 L1PA7 6471 + 6266 6464 135134 198 chain 10859 chr11 135006516 + 32088183 32088371 MER30 238 - 0 207 156751 29 17 17 63 10 24 57 1 6 11 chain 25012 chr11 135006516 + 32096005 32096291 AluSp 311 - 12 299 104726 92 0 1 194 chain 16612 chr11 135006516 + 32099831 32100195 THE1B 368 - 0 368 136630 49 14 13 64 135 140 102 chain 29383 chr11 135006516 + 32102367 32102741 MLT2A2 560 + 176 560 87157 4 1 0 222 0 11 147 chain 6666 chr11 135006516 + 32105256 32105951 MLT1B 390 - 22 381 179939 74 585 249 36 chain 3621 chr11 135006516 + 32134398 32134440 MADE1 96 + 54 96 213324 42 chain 20718 chr11 135006516 + 32154007 32154374 THE1B 368 + 0 368 124899 169 1 0 11 59 64 52 17 18 22 4 0 32 chain 19494 chr11 135006516 + 32161068 32161402 THE1D 372 - 1 331 128673 30 2 1 115 1 0 25 32 34 34 0 4 49 9 10 12 10 1 15 chain 29529 chr11 135006516 + 32170063 32170440 THE1C 375 - 0 375 86529 78 2 0 297 chain 6913 chr11 135006516 + 32190886 32191072 MER33 330 - 56 256 178088 6 5 0 15 1 0 64 74 94 21 chain 15452 chr11 135006516 + 32193390 32193565 AluYc 301 + 126 301 140046 175 chain 22418 chr11 135006516 + 32238928 32239222 AluSx1 309 + 5 295 118390 40 10 8 234 2 0 8 chain 15764 chr11 135006516 + 32249351 32249643 THE1B 368 + 0 302 139076 107 9 10 60 59 66 43 3 5 11 chain 26331 chr11 135006516 + 32249650 32249927 AluYa5 310 - 1 278 98694 277 chain 12865 chr11 135006516 + 32261429 32261583 L1PA6 6164 + 6005 6160 148776 5 0 1 149 chain 29254 chr11 135006516 + 32286654 32286963 AluYf4 310 + 1 310 87770 309 chain 13666 chr11 135006516 + 32292801 32293158 MSTD 398 + 0 386 145721 37 11 13 28 1 2 40 109 133 35 22 23 12 1 2 61 chain 188724 chr11 135006516 + 32304908 32308014 L1PA15 4387 + 1502 4355 20169 47 7 82 54 0 4 29 409 106 18 3 0 26 1 0 167 24 5 324 0 1 156 1 0 4 0 1 194 0 1 9 10 17 286 0 4 64 2 3 63 6 5 174 0 4 4 0 1 267 4 5 184 3 1 15 5 0 21 9 10 31 6 3 40 1 0 24 0 3 145 1 0 26 2 1 15 0 1 38 1 0 22 4 0 6 9 8 14 1 0 21 23 20 38 3 1 12 10 5 23 chain 23116 chr11 135006516 + 32314554 32314838 AluSc 308 + 14 290 115057 117 1 0 153 7 0 6 chain 14746 chr11 135006516 + 32316508 32316783 THE1C 375 - 39 375 142113 87 81 142 107 chain 27312 chr11 135006516 + 32321007 32321383 THE1C 375 + 0 375 95236 81 7 8 18 15 13 255 chain 16224 chr11 135006516 + 32350905 32351107 AluSc5 308 + 82 285 137684 49 1 0 146 0 2 6 chain 120998 chr11 135006516 + 32389796 32391367 THE1B-int 1605 - 9 1605 30692 155 1 0 160 12 1 600 1 2 4 1 0 73 1 0 94 10 9 18 15 17 6 0 25 23 0 12 397 chain 24563 chr11 135006516 + 32391369 32391732 THE1B 368 - 2 368 107180 54 0 1 5 2 0 66 43 48 23 1 0 169 chain 9053 chr11 135006516 + 32494660 32494784 MER66C 541 + 410 535 165304 44 7 8 73 chain 8992 chr11 135006516 + 32504594 32504781 MLT2D 439 - 180 361 165648 58 30 25 56 26 25 17 chain 178023 chr11 135006516 + 32512310 32514297 L1PA5 6144 - 4 1993 21162 1647 0 1 312 0 1 28 chain 20324 chr11 135006516 + 32538621 32538926 L1MA5 2750 - 90 397 126165 14 1 0 15 1 0 69 1 0 80 14 23 33 4 0 73 chain 148036 chr11 135006516 + 32544637 32546329 L1PA4 6152 - 9 1702 24873 816 12 12 788 5 6 71 chain 7509 chr11 135006516 + 32568218 32568311 MSTB 430 - 331 423 174112 83 1 0 9 chain 24745 chr11 135006516 + 32610726 32611022 AluSp 311 - 16 311 106196 266 1 0 29 chain 29794 chr11 135006516 + 32628627 32628937 AluYa5 310 - 0 310 85486 310 chain 114855 chr11 135006516 + 32629688 32631201 THE1B-int 1605 - 5 1605 32831 77 1 6 17 0 7 90 6 0 95 6 55 49 4 2 649 7 8 47 1 0 31 0 2 8 0 25 165 0 2 149 0 3 85 14 16 12 chain 34972 chr11 135006516 + 32639607 32640085 L1PA16 3655 - 82 571 76223 57 5 10 180 1 0 37 2 0 88 1 0 16 0 10 91 chain 139457 chr11 135006516 + 32642381 32644216 L1PA8 5853 + 4004 5853 26228 153 0 3 671 0 11 167 4 6 129 1 0 15 1 0 200 14 16 165 25 24 44 2 0 70 2 1 9 1 2 12 3 0 38 2 1 17 0 4 85 0 1 5 chain 31251 chr11 135006516 + 32646163 32646546 L1PA6 6164 + 5598 5974 82078 173 8 1 202 chain 55713 chr11 135006516 + 32646548 32647177 L1P2 5180 - 2748 3377 55246 629 chain 208596 chr11 135006516 + 32647177 32649518 L1PA4 6152 + 3790 6143 18597 561 0 4 523 0 3 268 0 5 989 chain 533155 chr11 135006516 + 32682851 32689349 L1PA5 6144 - 3 6144 3829 242 384 0 610 2 0 628 0 1 26 0 5 288 0 4 25 1 0 1057 0 2 24 0 1 53 1 0 27 0 4 68 0 17 1240 1 0 271 1 0 4 0 1 117 0 1 661 8 4 523 0 1 236 chain 11368 chr11 135006516 + 32683106 32683230 L1PA5 6144 - 259 383 154822 124 chain 7906 chr11 135006516 + 32683258 32683344 L1PA5 6144 - 27 113 171606 86 chain 22943 chr11 135006516 + 32711274 32711545 AluY 311 + 15 287 115892 117 0 1 154 chain 62561 chr11 135006516 + 32715085 32715822 L1P1 4361 + 3606 4341 51647 169 0 1 372 1 0 157 1 0 23 2 1 12 chain 11809 chr11 135006516 + 32716002 32716148 L1PA6 6164 + 6016 6162 152985 146 chain 33644 chr11 135006516 + 32721035 32721416 L1PA5 6144 + 5743 6124 78180 68 1 0 140 0 1 172 chain 62621 chr11 135006516 + 32729892 32730840 L1PB 1623 - 48 963 51624 22 53 30 8 1 0 14 20 13 4 1 0 14 0 1 15 2 1 7 1 0 133 21 12 245 0 4 111 0 5 276 chain 54481 chr11 135006516 + 32732363 32733274 L1PB1 5432 + 4412 5400 56041 22 0 1 145 0 1 10 6 83 151 12 13 260 21 19 17 1 0 10 1 0 14 5 1 10 2 0 9 0 1 4 11 38 14 5 4 42 1 0 13 69 52 22 3 2 22 1 0 8 chain 508904 chr11 135006516 + 32752340 32758485 L1PA5 6144 + 0 5912 6251 657 0 7 13 1 4 267 0 4 217 9 0 1995 1 0 6 1 0 79 0 1 4 1 0 187 0 1 174 248 0 730 0 4 120 22 29 1413 chain 21081 chr11 135006516 + 32755971 32756200 SVA_D 2077 - 0 229 123618 229 chain 471801 chr11 135006516 + 32763215 32769623 L1PA7 6471 - 10 6466 7977 4 1 0 143 0 1 459 0 3 130 3 0 6 19 22 72 2 1 123 0 1 560 0 1 100 131 0 5 121 0 1058 6 7 192 0 3 327 4 0 6 0 4 167 0 1 160 12 16 215 1 16 16 40 1 312 0 1 4 1 0 762 0 3 485 15 32 30 1 3 13 5 6 19 0 3 65 14 14 19 2 77 57 5 15 150 46 242 46 52 57 15 11 10 196 chain 9208 chr11 135006516 + 32764838 32764968 L1PA7 6471 + 3079 3198 133891 82 18 1 15 0 6 15 chain 8074 chr11 135006516 + 32764973 32765087 L1PA7 6471 + 3203 3317 133891 114 chain 505231 chr11 135006516 + 32784184 32790030 L1PA5 6144 + 5 6143 6514 130 17 31 253 13 14 289 0 2 150 19 0 360 0 1 1312 1 0 214 0 2 350 11 318 853 11 0 6 1 0 1841 3 0 12 chain 33892 chr11 135006516 + 32803421 32803919 MER1A 529 + 37 529 77789 20 13 9 14 11 8 61 0 2 270 2 1 31 2 0 5 12 13 44 0 1 13 chain 31506 chr11 135006516 + 32828467 32828871 LTR3B 427 - 32 427 81632 55 1 0 4 9 4 31 3 0 301 chain 7051 chr11 135006516 + 32840064 32840428 L1MB7 1623 + 1303 1607 177093 14 9 8 12 21 17 9 3 1 11 1 0 47 1 0 6 122 90 12 48 30 37 1 0 10 chain 4633 chr11 135006516 + 32864985 32865052 MADE1 96 - 4 96 199266 49 1 26 17 chain 116439 chr11 135006516 + 32887673 32889416 L1PREC2 3366 + 1383 3075 32299 785 21 20 167 4 0 93 2 1 142 0 1 119 1 0 41 2 0 54 2 1 43 1 0 4 3 0 13 70 55 30 3 0 11 63 47 41 3 1 7 1 0 4 1 0 12 chain 17189 chr11 135006516 + 32905627 32905842 MER57B1 401 + 0 217 135067 111 0 1 96 0 1 8 chain 6944 chr11 135006516 + 32909596 32909674 LTR12C 1709 - 703 781 177868 78 chain 3404 chr11 135006516 + 32922680 32922725 MIR 256 + 89 136 217004 34 0 2 11 chain 12187 chr11 135006516 + 32932787 32932945 L1PA8A 6298 + 6136 6291 151467 47 2 0 24 1 0 84 chain 11733 chr11 135006516 + 32941519 32941703 L1MC3 1789 - 555 740 153328 108 1 0 29 21 23 25 chain 34692 chr11 135006516 + 32957598 32957996 L1PA4 6152 - 12 413 76633 87 0 1 129 0 2 182 chain 542007 chr11 135006516 + 32962796 32968800 L1PA3long 6157 - 15 6157 2504 139 0 2 2428 1 0 2669 8 136 62 1 8 333 0 1 210 0 1 153 chain 7217 chr11 135006516 + 32972333 32972636 L1MB8 1703 - 198 541 175953 63 26 34 19 8 0 11 146 186 30 chain 5466 chr11 135006516 + 32980487 32980577 Charlie1a 1436 - 21 116 190352 26 12 16 10 0 1 42 chain 23506 chr11 135006516 + 32981830 32982125 AluSq2 311 + 10 303 113097 124 1 0 123 1 0 46 chain 4760 chr11 135006516 + 32988466 32988530 L1PB3 3668 - 364 427 197806 13 1 0 50 chain 3900 chr11 135006516 + 32991548 32991603 LTR49 580 - 78 132 208843 41 2 1 12 chain 21847 chr11 135006516 + 33002125 33002391 AluSc5 308 + 21 289 120829 253 1 3 12 chain 36802 chr11 135006516 + 33009950 33010411 LTR2 463 - 0 463 73797 94 0 1 135 6 7 226 chain 311449 chr11 135006516 + 33017225 33022180 L1PA11 4918 - 401 4899 12948 7 5 0 22 1 0 15 2 0 78 3 2 158 0 4 58 0 4 66 0 1 13 3 1 82 6 5 337 1 0 228 2 1 89 0 1 113 4 5 87 1 2 597 0 1 241 299 2 95 0 1 5 2 1 371 1 0 8 0 1 157 0 12 57 7 5 37 0 3 77 0 1 5 0 1 40 3 0 61 0 2 21 0 13 12 5 18 22 6 1 30 490 298 100 0 15 148 5 0 328 0 2 8 2 0 122 16 13 26 1 0 52 2 0 15 5 4 24 10 7 36 2 0 23 chain 32836 chr11 135006516 + 33034491 33034856 L1PA5 6144 + 5446 5811 79482 365 chain 29237 chr11 135006516 + 33034857 33035186 L1PA5 6144 + 5811 6140 87868 329 chain 24736 chr11 135006516 + 33042522 33042822 AluSc5 308 + 10 306 106244 116 4 0 180 chain 24008 chr11 135006516 + 33055854 33056146 AluY 311 + 22 311 110281 87 13 9 118 0 1 74 chain 40416 chr11 135006516 + 33067246 33067809 LTR14B 630 - 39 620 68713 30 0 1 8 1 0 28 0 1 204 0 3 80 30 0 23 0 42 142 6 8 11 chain 26624 chr11 135006516 + 33117085 33117368 AluYf4 310 + 0 283 97579 283 chain 24603 chr11 135006516 + 33153110 33153404 AluY 311 + 0 293 106979 126 5 0 139 0 4 24 chain 19527 chr11 135006516 + 33190916 33191164 AluSg 306 + 59 306 128574 203 1 0 44 chain 9090 chr11 135006516 + 33192928 33193036 HY1 111 - 0 111 165116 37 0 3 71 chain 25878 chr11 135006516 + 33200067 33200400 THE1C 375 + 0 339 100536 22 0 5 158 1 2 152 chain 4110 chr11 135006516 + 33201026 33201077 MER51A 677 - 427 478 205780 51 chain 5912 chr11 135006516 + 33218094 33218179 HY3 101 - 1 90 186071 14 1 0 10 7 12 53 chain 203024 chr11 135006516 + 33237044 33239276 L1PA3long 6157 - 4 2236 18992 2232 chain 25385 chr11 135006516 + 33247481 33247792 AluY 311 + 0 310 102756 17 2 1 292 chain 27929 chr11 135006516 + 33255574 33255864 AluYd8 298 - 8 298 93241 290 chain 4040 chr11 135006516 + 33260707 33260772 Kanga1c 672 + 579 641 206789 5 1 0 28 2 0 29 chain 133690 chr11 135006516 + 33264634 33266139 SVA_B 1603 + 7 1602 27279 14 6 22 781 0 82 57 4 0 13 1 0 14 1 0 601 2 0 11 chain 20185 chr11 135006516 + 33300169 33300407 AluY 311 + 61 298 126576 65 1 2 160 2 0 10 chain 31884 chr11 135006516 + 33311143 33311684 L1MA3 4352 - 70 596 81038 24 2 0 21 5 1 117 43 23 4 1 0 35 0 2 59 8 6 88 6 21 11 2 0 36 1 0 78 chain 3570 chr11 135006516 + 33320697 33320737 Tigger1 2417 + 1798 1838 214140 40 chain 5904 chr11 135006516 + 33330547 33330616 MER101 471 - 0 69 186151 69 chain 3098 chr11 135006516 + 33340005 33340039 MIR 256 + 66 100 222936 34 chain 5218 chr11 135006516 + 33345089 33345147 L1MB8 1703 + 1527 1585 192840 58 chain 21171 chr11 135006516 + 33354317 33354707 MSTB 430 - 0 430 123302 15 0 2 24 0 6 53 18 26 13 9 8 25 0 2 41 27 33 14 3 16 11 12 16 125 chain 13116 chr11 135006516 + 33356092 33356305 MER30 238 - 0 238 147779 48 3 0 52 2 0 13 4 18 46 4 26 20 6 0 15 chain 52545 chr11 135006516 + 33449851 33450516 L1PA6 6164 - 3 713 57269 7 4 0 69 0 1 65 0 1 8 5 6 482 7 53 18 chain 120572 chr11 135006516 + 33452423 33453854 LTR12C 1709 - 0 1709 30849 38 1 0 443 0 4 103 6 4 5 1 0 98 0 278 157 14 13 129 0 1 436 chain 116327 chr11 135006516 + 33454168 33455591 L1PA8A 6298 + 4868 6290 32332 477 0 3 30 8 0 65 0 8 34 1 0 7 18 6 69 0 2 84 0 3 349 0 1 172 2 0 5 3 4 73 0 4 26 chain 30995 chr11 135006516 + 33456070 33456467 HERVL-int 5654 - 2506 2885 82525 22 0 1 16 21 2 338 chain 29060 chr11 135006516 + 33461664 33461975 AluYa5 310 - 0 310 88720 217 1 0 93 chain 141863 chr11 135006516 + 33462467 33464019 L1PA4 6152 - 0 1553 25845 576 0 1 976 chain 8458 chr11 135006516 + 33469641 33469769 L1PA8 5853 - 0 129 168524 44 5 8 41 1 0 19 2 1 16 chain 2967 chr11 135006516 + 33474188 33474222 MADE1 96 - 62 96 225724 34 chain 112289 chr11 135006516 + 33487200 33488672 L1PA6 6164 + 4814 6162 33594 322 0 1 7 140 12 156 0 4 655 6 5 186 chain 9219 chr11 135006516 + 33507781 33507900 L1MA8 2339 + 1643 1801 164456 17 0 39 102 chain 76405 chr11 135006516 + 33516675 33517509 L1PA3long 6157 - 1 835 45260 834 chain 3908 chr11 135006516 + 33539240 33539324 L1MC5 759 + 585 670 208731 29 1 0 4 25 27 25 chain 75007 chr11 135006516 + 33548799 33550506 L1PB1 5432 + 4127 5422 46014 58 1 10 7 3 0 3 7 0 94 0 1 35 0 5 73 8 9 82 22 27 68 7 8 21 9 6 50 401 5 14 0 1 35 0 1 297 13 14 47 22 16 24 1 0 6 1 0 12 2 0 3 2 0 9 4 2 45 6 9 13 6 5 37 2 1 16 3 0 6 18 9 15 3 1 5 1 0 13 1 0 3 1 0 8 0 6 8 1 0 20 8 7 7 1 0 14 1 0 4 chain 5480 chr11 135006516 + 33604667 33604733 MIRb 242 - 109 175 190218 66 chain 73540 chr11 135006516 + 33610603 33611458 L1PA4 6152 + 5283 6146 46770 21 0 4 324 1 0 145 0 1 223 0 1 24 1 0 70 10 14 36 chain 19144 chr11 135006516 + 33625847 33626132 L1PB2 3958 + 3554 3838 129694 64 1 0 61 1 0 11 4 0 37 0 1 13 1 0 12 4 2 20 1 0 44 0 8 11 chain 15453 chr11 135006516 + 33634104 33635278 MSTA 426 - 9 419 140042 21 0 1 8 825 0 58 0 3 7 92 127 34 9 13 12 2 20 106 chain 541416 chr11 135006516 + 33646306 33652334 L1PA3long 6157 - 0 6140 2601 871 0 1 124 1 0 803 0 4 1090 0 2 17 36 6 331 0 1 1144 2 0 722 0 1 136 6 134 53 0 7 556 0 1 136 chain 41932 chr11 135006516 + 33663864 33664394 LTR10F 562 - 0 559 66715 280 8 6 44 2 5 9 0 28 187 chain 2672 chr11 135006516 + 33686889 33686974 MER52C 1267 - 241 323 230756 19 24 35 16 14 0 12 chain 402533 chr11 135006516 + 33698412 33703817 L1PB1 5432 - 5 5413 10013 5 2 0 15 13 15 17 0 2 16 7 0 6 0 5 15 1 0 4 2 0 30 30 16 45 1 0 17 1 0 52 17 11 9 1 0 9 1 0 24 0 1 4 9 6 146 0 9 142 1 2 4 0 2 127 1 0 4 0 1 40 1 2 151 2 0 8 15 10 32 2 0 435 2 3 150 1 0 18 0 3 87 20 11 10 3 2 221 2 1 143 0 1 74 1 0 49 5 0 19 0 2 43 8 0 7 1 9 31 1 0 230 0 4 43 2 1 241 1 6 81 11 8 313 0 2 195 0 1 372 0 2 202 9 19 156 1 0 52 14 26 176 6 7 198 9 14 45 0 1 118 0 4 42 0 1 71 1 0 115 2 1 213 1 0 5 0 1 82 5 4 33 chain 4460 chr11 135006516 + 33732620 33732674 L1MB7 1623 + 873 927 201231 54 chain 318422 chr11 135006516 + 33747389 33751224 L1PA7 6471 + 2615 6468 12652 24 0 2 31 0 2 223 1 2 303 0 3 277 3 4 4 1 0 59 4 8 447 4 6 485 9 10 17 0 2 1068 1 6 325 0 10 191 19 8 189 0 1 136 4 0 10 chain 26697 chr11 135006516 + 33809818 33810189 L1PA8 5853 + 5485 5853 97332 79 1 0 15 0 4 25 2 0 71 1 0 61 2 1 19 1 0 20 1 0 73 chain 10792 chr11 135006516 + 33817270 33817395 L1MA2 4263 + 3207 3332 157024 125 chain 189170 chr11 135006516 + 33844412 33847439 L1MA2 4263 - 123 2762 20129 15 3 1 9 4 2 8 1 0 47 7 0 89 4 3 9 2 1 150 14 11 133 1 0 37 0 1 4 1 0 34 5 2 17 6 4 381 7 5 5 0 2 200 10 11 9 0 1 38 7 0 29 11 0 3 4 0 109 7 8 101 0 1 16 2 0 66 1 0 46 0 1 185 0 5 157 6 7 170 2 1 16 0 2 9 21 20 100 348 0 79 10 12 229 15 10 28 chain 93446 chr11 135006516 + 33853713 33855036 HSMAR1 1287 + 0 1284 38519 65 59 6 65 0 17 392 31 28 164 1 0 210 9 5 159 12 15 31 0 2 125 chain 29932 chr11 135006516 + 33858104 33858418 AluYb8 318 - 4 318 85018 314 chain 69274 chr11 135006516 + 33859709 33860523 L1PA8A 6298 - 7 826 48695 609 0 3 103 0 3 83 2 1 17 chain 6514 chr11 135006516 + 33872226 33872617 MLT1F 544 - 22 381 181131 37 186 187 33 94 61 41 chain 24609 chr11 135006516 + 33911211 33911650 L1PB4 2604 + 2101 2547 106941 62 0 1 4 1 0 96 0 9 90 13 12 9 2 0 44 80 81 38 chain 5807 chr11 135006516 + 33920263 33920344 MER3 215 - 119 201 187070 42 3 4 36 chain 4409 chr11 135006516 + 33931240 33931484 AluJr4 308 + 41 117 201826 33 178 10 33 chain 25884 chr11 135006516 + 33938909 33939266 THE1B 368 + 0 368 100511 26 0 1 62 0 1 79 1 0 29 35 45 125 chain 3666 chr11 135006516 + 33943008 33943047 L1MB5 1630 + 885 924 212453 39 chain 19723 chr11 135006516 + 33943388 33943625 L1PA7 6471 + 6232 6468 128030 200 0 1 25 2 0 10 chain 42806 chr11 135006516 + 33953400 33953933 LTR10A 586 - 0 563 65648 375 8 9 61 1 0 17 2 23 26 0 1 7 0 8 36 chain 26375 chr11 135006516 + 33968059 33968347 AluYa5 310 - 12 300 98517 288 chain 12300 chr11 135006516 + 33979825 33979994 Tigger3b 1229 - 275 460 151013 76 6 17 70 0 5 17 chain 26296 chr11 135006516 + 34001404 34001792 L1PA8 5853 - 0 347 98846 20 36 0 73 1 0 67 1 0 14 2 1 70 2 0 24 0 1 19 1 0 58 chain 125727 chr11 135006516 + 34007128 34008566 SVA_D 2077 + 62 2075 29179 476 11 69 60 0 37 212 5 494 28 1 0 21 2 0 607 6 0 9 chain 140814 chr11 135006516 + 34011463 34013122 LTR12C 1709 + 0 1709 26022 525 0 1 286 0 40 259 1 0 6 2 0 107 0 4 112 0 8 361 chain 13529 chr11 135006516 + 34030455 34030639 MER30 238 - 0 200 146246 48 3 0 66 6 25 61 chain 11920 chr11 135006516 + 34054854 34055010 MLT2B1 522 + 1 157 152517 120 0 1 18 2 1 16 chain 20430 chr11 135006516 + 34064212 34064485 AluSc 308 + 21 291 125814 110 15 11 134 0 1 14 chain 18367 chr11 135006516 + 34064486 34064820 MSTA 426 - 34 426 131885 45 17 53 56 4 0 8 3 4 61 0 1 8 33 61 21 4 0 74 chain 24266 chr11 135006516 + 34065768 34066061 AluSq10 312 - 12 301 108869 5 2 0 12 2 0 272 chain 6065 chr11 135006516 + 34237854 34237963 L1MC1 2226 - 143 246 184703 20 20 16 55 2 0 12 chain 5324 chr11 135006516 + 34240457 34240522 L1MC1 2226 - 1275 1340 191780 65 chain 30427 chr11 135006516 + 34295417 34295735 AluYb8 318 + 0 318 83598 318 chain 3795 chr11 135006516 + 34299891 34300008 MER103C 291 + 122 237 210461 39 57 55 21 chain 5689 chr11 135006516 + 34363035 34363104 MER3 215 + 12 81 188207 69 chain 23932 chr11 135006516 + 34388914 34389434 L1PB1 5432 - 5 494 110740 5 2 0 14 23 21 16 2 1 24 68 52 14 2 1 43 1 0 15 2 1 52 2 0 9 22 17 4 1 0 20 19 20 160 chain 155619 chr11 135006516 + 34389434 34391431 L1PB1 5432 + 2904 4928 23905 22 0 1 33 0 4 353 22 27 186 0 4 63 0 1 297 0 1 4 0 1 312 1 0 262 0 4 48 0 4 61 4 0 33 4 1 79 0 2 81 6 14 126 chain 19109 chr11 135006516 + 34394896 34395189 AluSz6 309 + 0 289 129796 57 1 0 45 18 19 11 14 11 106 1 0 40 chain 31468 chr11 135006516 + 34395545 34395906 L1PA7 6471 - 7 371 81694 7 0 2 146 1 2 207 chain 16501 chr11 135006516 + 34398098 34398312 Tigger1 2417 + 1041 1261 136919 22 2 10 111 2 0 77 chain 24857 chr11 135006516 + 34404913 34405199 AluYk4 311 + 8 295 105589 47 1 2 238 chain 38852 chr11 135006516 + 34407599 34408066 L1PA5 6144 - 2 458 70943 187 15 4 265 chain 406670 chr11 135006516 + 34410586 34416027 L1PB1 5432 - 19 5374 9890 9 1 0 13 2 1 20 1 0 24 2 0 14 8 5 18 16 7 6 3 0 15 1 0 44 1 0 16 2 1 48 36 29 5 1 0 24 1 0 6 10 5 482 1 0 133 0 1 303 0 1 53 8 0 173 0 1 253 0 1 9 0 1 305 23 0 73 21 10 98 1 0 368 1 0 129 0 1 25 0 1 188 4 1 169 0 1 211 6 7 538 0 2 147 34 24 97 1 0 41 11 7 347 0 1 299 2 1 56 1 0 287 4 3 6 0 2 20 38 39 57 0 2 71 chain 10717 chr11 135006516 + 34429727 34430015 L1MA8 2339 + 1984 2267 157336 25 1 0 25 1 18 42 7 0 7 32 18 37 12 10 22 41 44 26 1 0 9 chain 8387 chr11 135006516 + 34463486 34463656 L1ME2z 1083 - 491 660 168923 34 21 15 16 1 2 21 1 0 5 1 0 4 6 12 60 chain 3111 chr11 135006516 + 34515679 34515712 MIRb 242 + 107 140 222710 33 chain 5910 chr11 135006516 + 34537957 34538030 MIR 256 - 123 199 186085 62 0 3 11 chain 4656 chr11 135006516 + 34552919 34553140 L1MB3 1562 + 1276 1455 199000 50 147 107 5 2 0 17 chain 3158 chr11 135006516 + 34618259 34618523 LTR33A_ 513 - 49 339 221773 26 203 230 13 2 1 20 chain 489628 chr11 135006516 + 34708515 34714377 L1PA2 6032 - 3 6021 7386 265 1 0 2203 2 1 173 1 2 808 0 5 407 464 615 937 0 1 356 1 0 183 1 2 60 chain 10015 chr11 135006516 + 34720254 34720507 L1PB1 5432 + 5196 5430 160509 24 18 16 20 6 12 11 2 1 16 1 0 4 2 0 11 9 0 15 12 9 11 2 0 24 1 0 23 1 0 11 1 0 11 1 0 11 1 0 4 chain 88214 chr11 135006516 + 34721524 34722747 L1MA2 4263 - 205 1434 40295 76 29 27 146 12 9 138 1 0 25 0 1 49 6 4 283 2 15 270 1 0 101 5 6 79 chain 26860 chr11 135006516 + 34745103 34745459 THE1A 353 - 0 353 96772 151 1 0 61 1 0 31 2 1 109 chain 6955 chr11 135006516 + 34747077 34747193 MLT1D 503 + 0 115 177777 18 0 2 7 21 18 70 chain 331131 chr11 135006516 + 34759079 34764070 L1P2 5180 + 3 4744 12157 147 1 0 43 105 104 16 200 23 18 43 16 78 23 0 9 23 15 22 63 52 16 108 32 74 47 79 40 0 15 45 0 2 167 57 57 161 1 0 4 0 1 182 15 24 13 12 3 286 0 18 561 0 1 70 1 2 790 1 0 508 0 1 6 11 10 246 0 4 220 0 1 4 1 0 69 1 0 6 0 1 50 5 6 319 0 1 103 chain 28309 chr11 135006516 + 34769277 34769598 L1PA4 6152 - 6 340 91905 22 0 13 299 chain 17421 chr11 135006516 + 34771225 34771474 Tigger3a 397 + 27 325 134458 48 21 70 180 chain 376768 chr11 135006516 + 34782195 34786532 L1P1 4361 - 33 4360 10853 23 1 0 155 1 0 1591 1 0 1525 0 1 324 14 7 128 1 0 573 chain 28012 chr11 135006516 + 34802901 34803201 AluYb8 318 - 0 300 92961 300 chain 104836 chr11 135006516 + 34818510 34819900 THE1C-int 1605 + 181 1596 35540 120 0 1 124 0 1 18 10 17 106 29 22 425 9 24 279 0 7 52 0 1 218 chain 3238 chr11 135006516 + 34819927 34819961 THE1C 375 - 332 366 220279 34 chain 24867 chr11 135006516 + 34824002 34824457 L1PB 1623 + 1151 1573 105531 152 3 4 139 1 0 7 2 1 26 12 8 13 5 1 13 1 0 9 52 29 20 chain 5506 chr11 135006516 + 34837941 34838006 HSMAR1 1287 - 1222 1287 189982 65 chain 2205 chr11 135006516 + 34839417 34839615 THE1B 368 - 0 196 101242 176 2 0 20 chain 9421 chr11 135006516 + 34839620 34839737 THE1B 368 - 200 317 163454 117 chain 122036 chr11 135006516 + 34839788 34841351 THE1B-int 1605 - 11 1605 30375 174 0 1 90 1 0 190 3 4 68 3 0 5 0 3 186 0 1 351 1 3 64 4 29 409 0 2 14 chain 13843 chr11 135006516 + 34841351 34841555 THE1B 368 - 0 195 145090 10 1 0 70 7 8 88 9 0 19 chain 1882 chr11 135006516 + 34841557 34841726 THE1B 368 - 196 368 101242 130 0 5 24 2 0 13 chain 3113 chr11 135006516 + 34852932 34852968 MLT1C 463 - 11 47 222681 36 chain 4060 chr11 135006516 + 34857418 34857482 MER96B 391 - 56 118 206488 44 6 4 14 chain 3065 chr11 135006516 + 34871821 34871853 LTR16A1 462 + 424 456 223673 32 chain 25920 chr11 135006516 + 34887489 34887879 MER1A 529 + 135 529 100336 181 6 8 133 43 45 27 chain 15234 chr11 135006516 + 34898903 34899083 L1PA5 6144 - 1 183 140676 10 1 3 169 chain 3340 chr11 135006516 + 34906902 34906940 Tigger3c 601 + 53 91 218230 38 chain 27100 chr11 135006516 + 34906945 34907379 LTR3A 482 - 44 470 95939 14 0 1 38 6 0 8 5 12 16 0 1 61 0 1 13 57 45 118 0 1 84 1 0 13 chain 56125 chr11 135006516 + 34917609 34918271 L1PA7 6471 + 5772 6461 55052 188 0 24 20 0 4 444 1 0 9 chain 29093 chr11 135006516 + 34933998 34934431 MLT2A1 477 + 0 477 88583 91 1 0 7 1 0 71 4 1 8 1 2 25 0 1 11 0 8 33 13 14 113 4 0 10 3 45 28 0 1 4 1 0 4 chain 50402 chr11 135006516 + 34934829 34935452 LTR12_ 688 - 2 688 58711 129 0 10 93 6 9 138 1 0 4 0 1 132 3 52 103 0 1 14 chain 118961 chr11 135006516 + 34971939 34973579 L1PA3long 6157 - 15 1334 31434 646 320 0 364 1 0 309 chain 130515 chr11 135006516 + 34973580 34975026 L1PA3long 6157 + 3335 4783 27959 123 0 2 1323 chain 7196 chr11 135006516 + 35001912 35001990 LTR12F 595 - 115 193 176100 78 chain 117455 chr11 135006516 + 35002547 35003875 L1PA4 6152 - 0 1327 31980 192 1 0 1135 chain 155560 chr11 135006516 + 35003875 35005643 L1PA4 6152 + 3044 4811 23914 165 1 0 1602 chain 36516 chr11 135006516 + 35026176 35026594 L1PA7 6471 - 10 428 74218 418 chain 473372 chr11 135006516 + 35043529 35050079 L1PA7 6471 + 5 6468 7937 140 61 66 75 0 2 27 0 1 4 42 238 119 49 59 57 0 75 175 5 26 220 16 20 236 1 0 484 1 0 259 0 1 320 12 8 21 5 8 1366 0 2 142 2 1 665 389 8 23 0 1 224 22 0 382 0 7 131 2 1 20 3 2 686 8 1 7 0 8 138 4 0 7 chain 28074 chr11 135006516 + 35069472 35069814 THE1A 353 + 0 342 92745 110 1 0 8 0 1 223 chain 120463 chr11 135006516 + 35069825 35071394 THE1A-int 1579 + 0 1579 30883 266 1 0 4 0 3 29 0 1 170 9 14 7 5 0 8 0 1 77 0 1 61 0 1 75 1 0 35 13 14 218 4 5 13 0 2 29 0 1 544 chain 27706 chr11 135006516 + 35071394 35071737 THE1A 353 + 0 342 94018 110 2 1 231 chain 93358 chr11 135006516 + 35075235 35076273 L1P1 4361 + 3292 4328 38550 858 1 0 155 1 0 23 chain 3548 chr11 135006516 + 35080568 35080606 L1PA6 6164 + 6124 6162 214572 38 chain 22903 chr11 135006516 + 35097315 35097574 L1PA5 6144 - 5 264 116093 259 chain 40867 chr11 135006516 + 35102721 35103181 L1PA5 6144 + 5683 6144 68068 127 0 1 333 chain 488055 chr11 135006516 + 35112622 35118318 L1PA6 6164 + 435 6152 7440 30 1 0 82 17 0 7 0 1 1550 0 1 126 0 14 44 0 1 583 0 9 306 0 1 265 0 3 487 2 0 60 0 3 106 5 7 57 4 5 609 0 1 360 0 1 671 1 2 148 0 1 39 0 1 136 chain 11632 chr11 135006516 + 35118365 35118560 MLT1A0 366 + 147 344 153767 15 14 17 19 19 18 128 chain 26461 chr11 135006516 + 35129931 35130264 THE1C 375 + 0 335 98204 44 0 1 77 3 0 81 0 3 67 0 1 61 chain 33690 chr11 135006516 + 35146362 35146853 L1PA8 5853 + 5368 5853 78105 196 1 0 44 2 0 62 20 18 52 2 1 10 10 10 92 chain 10105 chr11 135006516 + 35212049 35212178 MER85 139 - 0 139 160070 40 0 10 89 chain 24273 chr11 135006516 + 35231897 35232202 L1PREC2 3366 - 2228 2527 108830 38 6 0 261 chain 3155 chr11 135006516 + 35294617 35294692 MADE2 80 + 5 80 221831 21 28 28 26 chain 12317 chr11 135006516 + 35367606 35367759 L1PA7 6471 - 2 154 150950 10 2 1 141 chain 10709 chr11 135006516 + 35396024 35396207 MER30B 195 - 1 186 157380 26 1 2 19 3 0 63 14 17 12 4 5 41 chain 3416 chr11 135006516 + 35413503 35413540 tRNA-Arg-AGA 37 - 0 37 216845 37 chain 101125 chr11 135006516 + 35417222 35418321 L1PA2 6032 - 0 1099 36482 1099 chain 76308 chr11 135006516 + 35418321 35419144 L1PA2 6032 + 4113 4936 45212 823 chain 25102 chr11 135006516 + 35429841 35430152 THE1A 353 + 0 310 104279 198 1 0 112 chain 25811 chr11 135006516 + 35451502 35451782 L1PA2 6032 + 5741 6021 100821 280 chain 292274 chr11 135006516 + 35466337 35470643 L1PA10 4194 - 48 4007 13877 30 22 19 650 1 4 79 0 1 15 0 4 9 0 2 5 2 1 556 1 3 54 8 0 31 0 4 20 2 0 47 1 2 322 0 2 261 6 10 197 1 2 64 1 0 28 312 0 223 0 1 256 0 1 292 5 11 53 2 1 360 0 5 6 8 3 24 1 0 4 3 2 79 1 0 8 4 0 15 1 0 5 0 3 9 1 0 7 1 0 21 2 0 9 72 45 10 2 0 16 17 15 8 2 0 9 11 7 10 2 0 7 3 0 12 chain 64463 chr11 135006516 + 35481888 35482623 L1PA5 6144 - 13 761 50814 231 1 2 241 1 11 78 0 2 183 chain 8603 chr11 135006516 + 35485999 35486184 MER20 218 - 50 218 167712 10 1 2 66 38 32 25 16 4 29 chain 24434 chr11 135006516 + 35497832 35498156 THE1C 375 + 6 336 107891 33 0 4 133 0 1 6 10 11 142 chain 3452 chr11 135006516 + 35500962 35501001 MIRb 242 + 165 204 216165 39 chain 141323 chr11 135006516 + 35502248 35504435 L1PA8 5853 - 0 1849 25933 93 1 0 19 2 1 38 7 16 7 11 0 71 2 0 44 1 0 72 10 9 414 329 0 60 2 0 668 2 1 62 1 2 117 0 1 154 chain 51532 chr11 135006516 + 35564770 35565417 PABL_B 668 - 8 660 57942 44 4 3 14 0 2 532 0 4 53 chain 29719 chr11 135006516 + 35574989 35575302 AluYb9 318 - 5 318 85768 313 chain 17648 chr11 135006516 + 35591182 35591404 THE1B 368 - 1 222 133845 194 2 1 26 chain 101209 chr11 135006516 + 35599842 35600947 L1PA3long 6157 + 5051 6157 36463 963 0 1 142 chain 79905 chr11 135006516 + 35617144 35618194 L1PB 1623 - 170 1211 43635 7 1 0 141 9 1 203 1 0 112 4 5 467 7 11 21 1 0 68 3 0 5 chain 40980 chr11 135006516 + 35678342 35678867 MER41A 554 - 8 544 67936 72 0 5 68 12 17 291 0 1 82 chain 26018 chr11 135006516 + 35714495 35714841 MER57A1 433 - 14 433 99956 62 1 0 69 1 9 36 3 69 174 chain 151681 chr11 135006516 + 35715397 35717473 MER57-int 2662 - 522 2616 24376 53 0 3 108 3 7 56 13 15 34 6 0 12 0 1 480 0 2 50 3 6 234 1 0 4 0 6 62 1 0 61 1 0 69 0 8 73 1 0 26 0 21 56 4 0 170 0 4 208 6 4 178 57 47 8 10 0 28 chain 15176 chr11 135006516 + 35718622 35718984 L1PA4 6152 - 9 372 53685 139 0 1 223 chain 129926 chr11 135006516 + 35719001 35720812 L1PA4 6152 - 0 1480 28100 17 1 0 663 337 0 168 1 5 258 0 3 366 chain 13080 chr11 135006516 + 35719706 35720018 L1PA4 6152 - 372 680 53685 203 4 0 105 chain 78103 chr11 135006516 + 35720812 35721691 L1PA4 6152 + 3800 4683 44292 556 0 4 323 chain 553069 chr11 135006516 + 35724326 35730469 L1PA3long 6157 + 10 6157 1058 396 0 1 4 1 0 205 2 0 431 0 2 539 1 0 1534 0 1 1585 0 1 339 0 3 254 1 5 168 1 0 104 4 0 241 0 1 333 chain 31899 chr11 135006516 + 35731387 35731791 MER57A1 433 - 23 430 81014 120 1 0 199 0 4 84 chain 20853 chr11 135006516 + 35761424 35761667 AluSc5 308 + 58 301 124450 243 chain 539780 chr11 135006516 + 35776063 35782187 L1PA4 6152 - 9 6148 2851 139 0 1 710 0 1 1728 0 3 50 2 3 255 0 3 72 0 1 2227 0 4 260 0 3 347 2 0 332 chain 118788 chr11 135006516 + 35792562 35794449 THE1A-int 1579 + 0 1560 31496 359 9 8 42 328 14 79 1 0 40 1 6 94 27 31 287 0 1 115 0 1 288 25 3 192 chain 515207 chr11 135006516 + 35795021 35801113 L1PA5 6144 - 1 6137 5645 8 2 0 804 0 1 32 1 4 272 0 1 433 1 0 985 1 0 4 0 1 32 0 1 133 0 9 58 0 1 107 1 3 84 1 0 257 0 4 714 0 2 131 0 1 58 3 0 747 0 1 86 9 0 337 2 19 70 7 6 148 2 4 123 0 1 16 7 10 50 4 0 187 0 1 4 1 0 34 10 24 77 3 5 46 chain 3553 chr11 135006516 + 35817574 35817616 MIR 256 - 174 216 214481 42 chain 38259 chr11 135006516 + 35819449 35819967 MER4A1_ 611 - 0 611 71767 8 1 0 4 0 2 280 0 1 4 1 0 7 0 57 54 1 5 14 7 37 15 0 1 122 chain 45834 chr11 135006516 + 35821587 35822180 LTR12 884 - 15 884 62191 31 1 0 111 0 103 96 1 0 136 13 150 148 0 39 33 1 0 22 chain 3580 chr11 135006516 + 35856028 35856077 L2a 937 + 267 315 213970 4 1 0 44 chain 6241 chr11 135006516 + 35875601 35875674 MER58B 340 - 13 86 183243 73 chain 43294 chr11 135006516 + 35886088 35886579 L1PA5 6144 + 5640 6130 65060 391 1 0 99 chain 3421 chr11 135006516 + 35895684 35895724 MADE1 96 - 10 50 216745 40 chain 21940 chr11 135006516 + 35917705 35918109 MSTA 426 + 8 426 120461 82 0 1 41 37 38 35 1 0 5 49 55 35 0 5 8 2 5 97 1 0 11 chain 4142 chr11 135006516 + 35933158 35933229 MER20 218 - 111 177 205341 17 2 0 5 7 4 40 chain 19751 chr11 135006516 + 35957812 35958239 L1PB1 5432 + 5031 5427 127955 72 1 2 9 3 0 24 1 0 6 1 0 14 5 1 9 5 4 5 0 1 39 7 6 13 1 0 43 4 3 14 2 0 6 16 6 19 8 5 14 2 0 24 1 0 14 6 7 13 1 0 14 1 0 5 1 0 4 chain 22640 chr11 135006516 + 36007095 36007465 THE1B 368 + 2 368 117376 143 3 0 24 1 0 4 19 21 6 0 5 4 1 0 4 0 1 16 1 0 12 2 1 55 19 14 56 chain 15754 chr11 135006516 + 36009908 36010135 L1PA16 3655 - 689 922 139099 49 1 0 19 1 0 4 7 11 77 0 4 69 chain 12324 chr11 135006516 + 36022771 36022908 L1PA4 6152 - 18 155 150912 137 chain 29113 chr11 135006516 + 36034853 36035244 L1PA8 5853 - 0 384 88489 85 12 11 16 2 1 52 2 1 8 2 1 70 2 0 44 1 0 95 chain 3875 chr11 135006516 + 36050400 36050461 MIR 256 + 70 137 209224 29 8 14 24 chain 7455 chr11 135006516 + 36066893 36066985 MLT1C 463 - 2 94 174423 92 chain 3637 chr11 135006516 + 36067110 36067276 THE1B 368 + 0 168 130606 15 2 0 32 18 23 94 1 0 4 chain 30705 chr11 135006516 + 36067360 36067755 L1PA8 5853 - 0 389 83028 92 2 1 16 7 6 59 2 1 70 2 0 44 1 0 100 chain 3067 chr11 135006516 + 36067829 36067969 THE1B 368 + 230 368 130606 10 1 0 66 7 6 56 chain 5473 chr11 135006516 + 36072941 36073007 MIR 256 + 70 136 190274 66 chain 28679 chr11 135006516 + 36084082 36084426 THE1C 375 + 0 349 90416 66 0 2 136 1 4 141 chain 12536 chr11 135006516 + 36084479 36084702 LOR1b 457 - 173 395 150096 44 0 1 4 38 36 56 1 0 53 9 10 18 chain 22904 chr11 135006516 + 36097944 36098223 AluSg7 307 - 16 295 116090 15 1 2 148 1 0 114 chain 3747 chr11 135006516 + 36099600 36099639 MER52D 1964 - 813 852 211218 39 chain 3052 chr11 135006516 + 36135114 36135147 MLT1J 494 - 352 385 223962 33 chain 5150 chr11 135006516 + 36140484 36140546 L1MB8 1703 - 176 238 193544 62 chain 4258 chr11 135006516 + 36158540 36158598 MSTA 426 + 354 414 203764 10 1 3 47 chain 172063 chr11 135006516 + 36165451 36167571 SVA_D 2077 + 2 2077 21807 36 0 5 499 0 40 142 0 3 31 8 5 148 0 36 69 0 52 320 173 0 13 4 0 666 1 0 10 chain 3552 chr11 135006516 + 36166704 36166769 SVA_D 2077 + 985 1052 128478 51 0 2 14 chain 3403 chr11 135006516 + 36166804 36166877 SVA_D 2077 + 1086 1159 78899 73 chain 2829 chr11 135006516 + 36174398 36174460 MER68 562 + 490 553 228243 25 19 20 18 chain 3924 chr11 135006516 + 36188515 36188565 MLT1C 463 + 65 117 208503 22 0 2 28 chain 33448 chr11 135006516 + 36191934 36192351 L1PB1 5432 - 334 751 78490 417 chain 49643 chr11 135006516 + 36194737 36195295 L1PA5 6144 - 3 557 59281 6 4 0 548 chain 31103 chr11 135006516 + 36211128 36211507 L1PA5 6144 - 2 377 82335 7 4 0 142 0 5 6 6 1 214 chain 3580 chr11 135006516 + 36221395 36221434 MLT1A 405 - 6 45 213982 39 chain 18270 chr11 135006516 + 36267517 36267743 AluY 311 + 62 286 132152 68 2 0 156 chain 7787 chr11 135006516 + 36274249 36274382 MER96B 391 - 37 168 172377 15 10 9 39 2 0 24 1 0 37 0 2 5 chain 3133 chr11 135006516 + 36293053 36293193 MER74B 573 + 423 563 222325 22 87 87 31 chain 2865 chr11 135006516 + 36326281 36326311 MIR 256 + 101 131 227582 30 chain 5629 chr11 135006516 + 36327582 36327646 L1MA3 4352 - 427 491 188766 64 chain 33387 chr11 135006516 + 36327651 36328080 L1PA6 6164 - 2 444 78591 6 2 0 122 0 6 19 4 16 58 12 8 194 0 1 12 chain 60936 chr11 135006516 + 36346534 36347306 LTR17 781 - 9 780 52370 30 20 1 6 3 0 11 1 23 373 2 1 326 chain 18217 chr11 135006516 + 36372110 36372462 L1PB1 5432 - 10 325 132288 18 1 0 12 1 0 22 1 0 23 3 1 14 1 0 9 4 0 11 9 0 12 2 0 4 1 0 9 0 1 5 1 0 45 1 0 15 2 1 52 2 0 9 5 1 14 8 6 24 5 0 7 chain 19547 chr11 135006516 + 36408732 36408976 L1PA5 6144 + 5898 6143 128526 88 3 1 6 1 0 5 0 4 141 chain 121597 chr11 135006516 + 36413239 36415386 L1MA3 4352 - 0 1773 30508 38 1 0 26 1 0 5 2 1 22 2 0 23 5 1 32 0 2 16 4 16 29 112 91 508 1 0 4 0 1 46 361 0 107 1 0 116 6 5 204 1 6 180 1 0 95 7 8 43 4 5 138 1 0 5 chain 24647 chr11 135006516 + 36414121 36414477 THE1D 372 - 0 372 106738 60 1 3 83 33 46 17 0 1 162 chain 9403 chr11 135006516 + 36416940 36417060 MER3 215 - 62 182 163543 5 1 0 18 0 1 96 chain 136638 chr11 135006516 + 36435270 36436778 L1PA3long 6157 - 0 1516 26706 20 0 6 313 1 0 430 0 2 282 1 2 461 chain 24900 chr11 135006516 + 36440071 36440352 AluY 311 + 7 289 105342 125 0 1 156 chain 72569 chr11 135006516 + 36503128 36503910 L1PA2 6032 - 0 782 47050 782 chain 78793 chr11 135006516 + 36503910 36504764 L1PA2 6032 + 4395 5254 44152 636 0 5 218 chain 2591 chr11 135006516 + 36515076 36515144 MER58A 224 - 152 222 231813 27 27 29 14 chain 98232 chr11 135006516 + 36539390 36540488 L1PA4 6152 - 1 1096 37229 253 1 0 73 1 0 523 1 0 246 chain 2988 chr11 135006516 + 36542474 36542510 THE1B 368 + 2 37 225293 11 1 0 24 chain 124011 chr11 135006516 + 36543133 36544711 THE1B-int 1605 + 0 1605 29701 24 0 1 405 1 26 63 1 0 253 0 1 4 1 0 131 2 1 256 7 9 280 1 2 149 chain 161818 chr11 135006516 + 36547654 36549572 L1PA6 6164 - 17 1949 23087 143 0 1 200 0 2 487 1 0 822 5 17 260 chain 139449 chr11 135006516 + 36549572 36551287 L1PA6 6164 + 2525 4246 26093 38 0 1 33 10 13 464 3 0 110 0 1 6 1 0 22 5 4 23 0 4 209 0 1 58 0 1 10 0 1 272 1 0 450 chain 45540 chr11 135006516 + 36563083 36563693 LTR71B 605 + 0 605 62470 125 23 22 5 3 0 25 0 2 59 1 0 116 2 0 251 chain 107019 chr11 135006516 + 36567317 36568668 L1PA7 6471 - 3170 4565 34921 62 0 8 208 0 10 114 8 12 82 0 1 304 0 2 13 1 0 289 4 18 25 13 20 57 1 0 170 chain 261414 chr11 135006516 + 36568668 36571826 L1PA7 6471 + 3297 6468 15624 187 10 13 155 0 1 590 0 1 314 4 7 9 0 1 46 1 0 998 1 0 79 0 8 17 0 1 111 0 1 141 1 0 233 3 4 80 29 30 128 1 0 9 4 0 7 chain 567818 chr11 135006516 + 36573156 36579186 L1HS 6032 - 0 6031 37 255 0 1 5775 chain 181602 chr11 135006516 + 36635467 36637443 L1PA2 6032 - 0 1980 20835 1802 0 4 174 chain 54353 chr11 135006516 + 36663027 36663638 L1P1 4361 - 1421 2032 56012 611 chain 257396 chr11 135006516 + 36663638 36666543 L1PA5 6144 + 3212 6128 15856 1056 0 7 66 0 4 117 1 0 160 0 1 1261 2 1 116 0 1 126 chain 199463 chr11 135006516 + 36672122 36674364 L1PA5 6144 - 6 2262 19246 92 0 9 736 0 4 608 0 1 806 chain 8393 chr11 135006516 + 36675891 36675986 L1PA5 6144 - 0 95 168891 95 chain 137059 chr11 135006516 + 36691551 36694303 HUERS-P3b-int 2065 + 15 2030 26629 79 4 0 130 1 2 36 1 2 31 4 0 21 75 0 239 8 11 12 3 0 3 309 0 47 10 11 135 1 0 54 1 0 27 1 0 220 0 1 86 24 25 31 0 1 97 5 38 24 7 12 55 27 26 44 25 2 37 20 0 47 2 0 13 1 0 25 1 0 89 3 1 73 3 0 8 17 15 59 5 0 57 324 0 52 2 0 37 chain 523481 chr11 135006516 + 36694972 36701626 L1PA5 6144 + 0 6143 4814 120 0 14 390 3 2 211 1 0 128 0 10 193 7 3 94 13 4 1378 1 0 415 330 0 323 1 0 504 0 1 391 205 15 1775 1 2 170 chain 29946 chr11 135006516 + 36697937 36698256 AluYb8 318 - 0 318 84981 112 1 0 206 chain 17897 chr11 135006516 + 36699475 36699671 L1PA5 6144 - 2718 2914 132647 196 chain 7351 chr11 135006516 + 36705327 36705410 L1PA5 6144 - 0 83 175083 83 chain 23112 chr11 135006516 + 36708894 36709161 L1PA3long 6157 - 0 268 115086 142 0 1 125 chain 27935 chr11 135006516 + 36719798 36720146 L1PA8 5853 - 0 344 93220 95 0 2 13 2 1 54 1 0 9 1 0 71 2 0 44 1 0 55 chain 254889 chr11 135006516 + 36752710 36757077 L1PBa 3878 + 33 3711 15989 6 1 0 8 3 0 13 3 0 3 1 0 8 14 10 4 1 0 5 2 0 10 2 1 44 1 0 12 10 6 46 8 7 12 8 6 40 4 5 239 5 4 137 0 1 6 1 0 48 32 33 16 2 0 63 1 0 102 44 43 16 0 2 17 0 1 43 10 11 129 6 17 109 2 0 149 5 9 136 10 11 189 0 5 270 0 3 61 317 0 210 0 6 5 395 0 16 0 1 300 7 1 20 0 1 22 7 8 61 0 3 169 6 24 52 1 2 95 0 4 71 3 0 198 5 7 193 4 0 93 chain 24634 chr11 135006516 + 36774895 36775184 L1PA3long 6157 - 0 290 106809 104 8 9 177 chain 14801 chr11 135006516 + 36782393 36782596 MSTA 426 + 0 202 141932 131 9 8 63 chain 24197 chr11 135006516 + 36835531 36835869 L1PB2 3958 - 120 471 109234 42 0 1 20 10 24 15 1 0 55 1 0 64 1 0 66 7 8 56 chain 64213 chr11 135006516 + 36849637 36850401 L1PA7 6471 - 3 768 50905 413 1 2 350 chain 30308 chr11 135006516 + 36869467 36869825 L1PA7 6471 + 6090 6466 83882 46 0 1 45 0 17 267 chain 29777 chr11 135006516 + 36896867 36897187 AluYb8 318 + 0 318 85552 132 2 0 186 chain 32420 chr11 135006516 + 36915138 36915489 L1HS 6032 - 1 352 80166 351 chain 77961 chr11 135006516 + 36915489 36916330 L1HS 6032 + 4836 5677 44540 841 chain 80484 chr11 135006516 + 36926522 36927495 L1PA7 6471 - 9 990 43398 757 3 5 21 1 4 51 0 3 140 chain 98242 chr11 135006516 + 36943002 36944375 MER61-int 3695 - 0 1373 37227 311 0 6 13 1 0 12 9 8 189 5 6 4 0 1 247 56 52 12 0 1 68 1 0 92 0 1 57 1 0 61 3 0 5 0 3 54 16 14 156 chain 24791 chr11 135006516 + 36969524 36969877 THE1C 375 - 0 367 105941 26 1 0 40 0 16 203 23 22 60 chain 15436 chr11 135006516 + 36989748 36989914 L1PA2 6032 + 5862 6028 140088 166 chain 9250 chr11 135006516 + 36999856 36999999 MSTA-int 1630 - 0 142 164312 15 15 16 10 1 0 74 1 0 27 chain 3894 chr11 135006516 + 37008975 37009027 L1MA5 2750 + 2575 2631 208944 6 0 4 46 chain 25888 chr11 135006516 + 37025326 37025598 AluYa5 310 + 38 310 100489 272 chain 5188 chr11 135006516 + 37037793 37037995 L1MB1 2102 + 1799 2000 193160 33 72 68 28 42 45 27 chain 335956 chr11 135006516 + 37039410 37043142 L1PA3long 6157 - 0 3730 12000 146 6 0 958 0 1 374 1 2 292 0 1 16 1 2 315 0 1 279 2 0 478 2 1 114 0 1 54 0 1 694 chain 208929 chr11 135006516 + 37051533 37054073 L1PA7 6471 - 3 2608 18571 152 10 11 677 0 1 6 1 0 182 2 1 261 6 16 384 1 4 105 0 1 118 0 1 25 1 3 159 12 60 438 chain 56614 chr11 135006516 + 37054081 37054761 L1PA7 6471 + 3149 3832 54768 113 1 2 37 0 1 201 0 1 328 chain 17376 chr11 135006516 + 37077709 37078008 THE1B 368 + 0 306 134575 111 11 12 46 48 46 17 0 8 66 chain 79036 chr11 135006516 + 37156981 37157867 MER11D 897 + 0 897 44037 275 0 11 611 chain 141612 chr11 135006516 + 37169768 37171375 L1PA4 6152 + 4535 6143 25877 155 0 1 601 0 1 607 1 0 243 chain 52068 chr11 135006516 + 37202276 37202867 LTR10C 591 - 0 591 57582 591 chain 517393 chr11 135006516 + 37226609 37233121 L1PA7 6471 - 1 6468 5437 7 7 0 14 1 0 113 19 21 132 0 1 266 23 0 298 0 4 89 0 1 509 0 1 54 0 1 31 0 1 348 0 1 4 1 0 275 15 16 271 0 2 10 1 0 958 25 0 406 1 2 26 0 1 574 1 0 881 0 1 22 5 0 202 0 1 9 6 8 97 1 0 188 17 16 605 chain 9675 chr11 135006516 + 37233129 37233249 L1MA3 4352 - 972 1092 162214 120 chain 14227 chr11 135006516 + 37238242 37238410 THE1B-int 1605 - 11 184 143807 71 0 5 97 chain 17149 chr11 135006516 + 37240144 37240429 THE1B 368 - 69 360 135170 55 6 5 7 1 0 17 12 19 27 1 0 97 11 13 51 chain 543570 chr11 135006516 + 37262262 37268266 L1PA2 6032 - 2 6032 2258 15 0 6 146 0 1 1416 4 14 510 0 1 3431 0 8 225 1 0 183 1 2 72 chain 4286 chr11 135006516 + 37268707 37268755 MLT2D 439 + 391 439 203398 48 chain 5685 chr11 135006516 + 37320036 37320160 Tigger2b_Pri 1066 + 250 370 188253 26 41 37 57 chain 65667 chr11 135006516 + 37322273 37323346 MER11A 1151 - 15 1145 50260 100 54 55 33 0 1 26 0 1 37 18 0 21 48 5 21 0 26 121 4 6 144 0 1 85 21 22 137 4 0 66 1 0 50 8 0 24 0 99 25 5 4 20 chain 5860 chr11 135006516 + 37329686 37329761 MER77B 728 + 308 382 186593 61 1 0 13 chain 28452 chr11 135006516 + 37340800 37341113 L1PA3long 6157 - 1 314 91364 313 chain 25488 chr11 135006516 + 37356947 37357318 THE1C 375 + 0 373 102280 167 29 28 30 1 5 120 1 0 23 chain 116534 chr11 135006516 + 37370856 37372393 HERVL-int 5654 + 723 3533 32272 147 0 1 238 0 1 4 1 0 10 7 6 105 22 9 124 0 1 201 0 1 31 4 8 45 10 0 92 1 1290 140 0 1 355 chain 488762 chr11 135006516 + 37377828 37384320 L1PA7 6471 + 4 6470 7415 305 0 1 101 5 6 406 0 5 160 5 6 98 1 0 132 4 11 33 5 4 751 0 5 132 0 4 101 1 0 78 2 1 175 0 2 111 16 0 40 1 0 209 0 264 122 0 1 249 0 6 486 2 0 55 1 0 178 0 1 34 0 2 399 0 2 275 2 1 26 13 12 479 3 4 149 0 3 597 307 0 209 3 0 19 1 5 11 chain 20098 chr11 135006516 + 37388114 37388407 L1PA8 5853 + 5562 5849 126834 46 2 0 74 1 0 6 17 16 36 2 1 12 8 7 89 chain 5280 chr11 135006516 + 37391877 37391965 L1PB3 3668 + 3482 3566 192203 13 1 0 8 2 1 24 3 1 37 chain 36808 chr11 135006516 + 37402306 37402724 L1PA5 6144 - 9 428 73789 138 0 1 280 chain 20213 chr11 135006516 + 37429591 37429835 L1PA7 6471 + 5847 6106 126491 182 0 15 62 chain 16960 chr11 135006516 + 37429835 37430039 L1PA7 6471 + 6111 6315 135699 204 chain 13173 chr11 135006516 + 37430039 37430184 L1PA7 6471 + 6316 6461 147573 145 chain 121454 chr11 135006516 + 37444846 37446405 THE1B-int 1605 - 15 1605 30549 57 1 2 195 1 0 51 2 0 403 0 3 13 0 1 146 6 10 256 1 26 427 chain 507847 chr11 135006516 + 37449458 37457291 L1PA4 6152 - 11 5916 6338 1789 0 4 431 18 4 236 0 1 55 1934 0 1223 6 7 647 0 1 766 0 11 244 1 3 483 chain 138604 chr11 135006516 + 37452012 37453885 SVA_A 1864 - 0 1846 26381 582 41 0 40 3 0 34 11 9 31 8 5 20 1 0 201 0 37 19 1 0 4 9 6 113 6 8 27 12 9 29 2 0 111 7 6 36 6 9 212 18 10 42 4 3 243 chain 17464 chr11 135006516 + 37459987 37460276 L1PA8 5853 + 5566 5850 134346 41 3 1 30 1 2 25 6 8 6 3 0 9 1 0 52 2 1 19 2 1 89 chain 32515 chr11 135006516 + 37466052 37466423 L1PA4 6152 + 5776 6152 79996 365 0 5 6 chain 46010 chr11 135006516 + 37482663 37483165 L1PA3long 6157 - 15 517 62035 502 chain 26288 chr11 135006516 + 37506580 37506914 THE1A 353 + 0 333 98867 111 1 0 222 chain 9289 chr11 135006516 + 37508248 37508357 L1PA5 6144 - 14 123 164115 109 chain 106778 chr11 135006516 + 37513908 37515076 L1PA2 6032 - 0 1169 35039 859 0 1 309 chain 77658 chr11 135006516 + 37515076 37515914 L1PA2 6032 + 4023 4860 44496 250 1 0 587 chain 4471 chr11 135006516 + 37554256 37554414 L1MCb 1641 - 817 982 201105 16 87 92 6 0 2 49 chain 135945 chr11 135006516 + 37558846 37560353 L1PA3long 6157 - 0 1505 26845 5 3 0 1492 0 1 7 chain 16853 chr11 135006516 + 37566537 37566806 THE1B 368 - 83 366 135968 117 1 0 37 0 3 7 4 1 33 28 43 42 chain 26822 chr11 135006516 + 37568065 37568420 THE1B 368 - 0 368 96904 68 2 0 98 1 0 8 0 2 23 1 0 110 0 15 44 chain 6853 chr11 135006516 + 37568420 37568515 MLT1A 405 - 311 402 178555 72 4 0 19 chain 73709 chr11 135006516 + 37609281 37610413 MER11A 1151 + 0 1143 46669 55 1 100 23 8 0 52 1 0 64 4 0 32 0 2 115 0 1 20 0 1 73 0 1 86 6 8 50 5 7 145 25 1 26 44 1 20 18 0 13 4 3 21 0 1 60 6 7 155 chain 17200 chr11 135006516 + 37627489 37627715 L1PA8 5853 - 0 222 135038 93 1 0 19 2 1 53 1 0 5 1 0 51 chain 22644 chr11 135006516 + 37628601 37628901 AluY 311 + 4 291 117358 129 26 12 28 0 1 117 chain 51568 chr11 135006516 + 37661544 37662119 L1PA4 6152 + 5572 6152 57911 569 0 5 6 chain 27048 chr11 135006516 + 37666646 37666928 AluYb8 318 + 36 318 96116 282 chain 59810 chr11 135006516 + 37676280 37676950 L1PA4 6152 - 9 679 52925 670 chain 32375 chr11 135006516 + 37676967 37677326 L1PA3long 6157 - 0 359 80230 359 chain 71159 chr11 135006516 + 37679691 37680486 L1HS 6032 - 3421 4216 47687 795 chain 85727 chr11 135006516 + 37680486 37681434 L1PA3long 6157 + 5193 6142 41256 814 0 1 134 chain 50869 chr11 135006516 + 37749551 37750177 L1PA7 6471 - 17 652 58389 317 0 1 124 0 8 185 chain 116670 chr11 135006516 + 37794871 37796851 THE1A-int 1579 - 5 1564 32237 14 1 0 99 0 5 6 5 0 149 0 1 387 5 6 122 0 1 67 466 42 75 0 2 29 0 1 4 1 0 50 0 1 8 6 3 108 0 1 378 chain 22188 chr11 135006516 + 37795752 37796106 LTR7B 505 + 0 441 119410 108 0 10 22 0 3 28 20 86 34 38 5 15 0 41 89 chain 25404 chr11 135006516 + 37796859 37797210 THE1A 353 - 3 352 102664 107 5 2 5 0 3 31 1 0 91 1 0 86 2 0 5 0 2 17 chain 17425 chr11 135006516 + 37803584 37803880 L1PA11 4918 + 6 290 134447 9 2 0 27 2 0 29 8 6 47 12 10 46 1 0 28 14 11 71 chain 79099 chr11 135006516 + 37819331 37820383 MER11C 1089 - 26 1089 44002 90 3 2 197 5 0 36 0 1 38 1 0 7 5 9 84 10 8 19 38 40 215 0 4 57 0 9 247 chain 10635 chr11 135006516 + 37831063 37831184 L1PA5 6144 - 4 125 157671 121 chain 56608 chr11 135006516 + 37843000 37843666 L1PA7 6471 - 10 677 54777 324 0 1 342 chain 167197 chr11 135006516 + 37854129 37855952 L1PA3long 6157 + 4329 6152 22370 1823 chain 3220 chr11 135006516 + 37863081 37863115 MER51A 677 + 196 230 220584 34 chain 42523 chr11 135006516 + 37872107 37872607 MER9a1 513 + 0 513 65990 42 0 12 250 0 1 208 chain 3640 chr11 135006516 + 37876590 37876631 MER4D0 881 - 603 644 212971 41 chain 78139 chr11 135006516 + 37880487 37881451 LTR5_Hs 974 + 0 974 44444 6 0 5 448 0 4 193 1 2 316 chain 5232 chr11 135006516 + 37886376 37886447 L1MA5A 2387 - 81 151 192713 12 1 0 58 chain 97321 chr11 135006516 + 37922094 37923173 L1PA3long 6157 - 15 1095 37478 8 0 1 1071 chain 88427 chr11 135006516 + 37952121 37953139 LTR5A 1029 + 0 1029 40213 13 0 4 47 0 2 83 1 0 730 0 6 144 chain 49829 chr11 135006516 + 37957878 37958624 L1PA8 5853 - 0 735 59134 55 20 18 20 1 0 19 3 2 37 0 6 7 15 5 5 1 0 71 2 0 44 1 0 390 19 20 36 chain 23865 chr11 135006516 + 37958636 37958927 L1PA7 6471 - 4 301 111106 156 5 4 80 0 7 50 chain 7822 chr11 135006516 + 37962878 37963003 L1PB4 2604 - 82 203 172177 66 9 4 29 1 2 20 chain 5568 chr11 135006516 + 37978955 37979022 AluY 311 + 58 126 189393 16 0 1 51 chain 28523 chr11 135006516 + 37990768 37991173 LTR7 482 - 6 482 91087 212 8 40 37 0 1 71 23 61 54 chain 46270 chr11 135006516 + 38025799 38026393 LTR12_ 688 + 111 688 61795 27 18 2 26 1 0 522 chain 11586 chr11 135006516 + 38026496 38026622 L1PA5 6144 - 172 298 153945 126 chain 13397 chr11 135006516 + 38026622 38026789 L1PA5 6144 + 5980 6140 146733 21 7 0 139 chain 40402 chr11 135006516 + 38058237 38059084 L1PA7 6471 - 3 520 68733 16 1 0 123 0 11 165 1 0 16 1 0 33 338 0 153 chain 62850 chr11 135006516 + 38084765 38085481 L1PA4 6152 - 9 725 51510 42 0 1 208 1 0 465 chain 8034 chr11 135006516 + 38098893 38099121 L1MA8 2339 + 1996 2189 170839 13 1 0 91 2 0 5 100 68 16 chain 28384 chr11 135006516 + 38099603 38099914 AluYa5 310 + 0 310 91647 132 2 1 177 chain 22006 chr11 135006516 + 38106400 38106684 AluSp 311 - 15 301 120203 86 1 2 174 4 5 19 chain 50464 chr11 135006516 + 38132616 38133510 LTR12_ 688 + 0 673 58670 141 47 0 287 33 0 14 14 17 69 153 9 136 chain 238145 chr11 135006516 + 38133553 38136643 HERV9-int 5642 + 0 4824 16873 73 6 7 35 14 16 89 0 5 219 2 8 162 5 0 97 0 4 69 8 7 26 2 3 265 81 1 16 8 1 155 3 7 1359 5 12 204 0 1795 77 1 2 98 0 1 11 chain 52440 chr11 135006516 + 38138212 38139098 LTR12_ 688 + 0 688 57327 183 23 0 245 37 4 7 0 3 86 154 9 151 chain 50218 chr11 135006516 + 38149619 38150161 L1PA2 6032 - 0 542 58855 542 chain 138970 chr11 135006516 + 38154463 38156298 L1PA8 5853 + 4009 5843 26311 117 0 1 316 1 0 137 5 6 40 1 3 4 0 1 88 17 18 266 6 8 119 1 0 83 0 1 347 1 0 44 1 0 71 1 0 14 2 0 42 7 6 4 1 0 15 1 0 52 12 12 19 chain 292536 chr11 135006516 + 38185560 38188996 L1PA6 6164 - 2 3458 13856 764 1 0 459 1 10 874 0 1 740 0 1 69 0 4 49 5 6 109 1 2 73 1 0 204 0 4 16 0 1 70 chain 5503 chr11 135006516 + 38195081 38195188 Tigger3c 601 - 25 134 190023 16 27 29 64 chain 4709 chr11 135006516 + 38207002 38207320 MLT1A1 405 - 12 340 198402 32 0 2 22 241 249 23 chain 551703 chr11 135006516 + 38213292 38219435 L1PA3long 6157 + 0 6157 1223 570 1 0 1250 3 0 572 0 4 30 0 1 81 0 1 582 0 1 905 0 5 1308 0 4 366 0 3 351 1 0 123 chain 13379 chr11 135006516 + 38224919 38225074 L1PA6 6164 + 6005 6162 146786 101 0 2 54 chain 60628 chr11 135006516 + 38226022 38226848 L1PA8A 6298 + 5366 6203 52508 47 0 1 53 1 0 4 0 1 17 0 6 652 35 39 17 chain 13353 chr11 135006516 + 38227068 38227227 L1PA6 6164 + 6003 6162 146870 159 chain 37272 chr11 135006516 + 38242753 38243238 LTR10B 488 - 10 488 73130 368 7 1 97 1 0 12 chain 33196 chr11 135006516 + 38248368 38248859 LTR10B 488 - 10 488 78895 138 1 0 79 6 0 48 33 34 69 7 1 97 1 0 12 chain 4966 chr11 135006516 + 38253403 38253630 L1PA7 6471 + 5376 5618 42463 87 0 14 125 0 1 15 chain 46666 chr11 135006516 + 38253630 38254162 L1PA3long 6157 + 3822 4355 61410 202 5 6 325 chain 162554 chr11 135006516 + 38254163 38255957 L1PA3long 6157 + 4357 6157 22992 1140 0 6 654 chain 25442 chr11 135006516 + 38256020 38257183 L1PA7 6471 + 5621 6469 42463 185 1 4 32 3 4 283 323 8 61 1 0 263 3 0 8 chain 18113 chr11 135006516 + 38257527 38257746 L1PA5 6144 + 5925 6144 132559 219 chain 11550 chr11 135006516 + 38265408 38265540 L1PA5 6144 + 6008 6140 154099 132 chain 5039 chr11 135006516 + 38299940 38300004 LTR12C 1709 - 891 955 194741 64 chain 21469 chr11 135006516 + 38332568 38332828 AluSc5 308 + 11 274 122262 47 2 6 192 1 0 18 chain 23663 chr11 135006516 + 38335975 38336261 AluSg 306 + 8 294 112232 286 chain 32304 chr11 135006516 + 38355928 38356413 L1PBa 3878 + 1839 2278 80360 98 1 0 9 48 0 186 6 9 137 chain 32055 chr11 135006516 + 38363012 38363389 L1PA4 6152 - 9 385 80768 12 1 0 364 chain 9160 chr11 135006516 + 38363389 38363486 L1PA4 6152 + 5694 5791 164763 97 chain 3603 chr11 135006516 + 38381969 38382052 MLT1B 390 + 24 115 213598 21 1 0 5 16 26 34 1 0 5 chain 33674 chr11 135006516 + 38419361 38419931 THE1B-int 1605 + 0 503 78140 12 5 6 71 63 7 11 1 4 194 0 1 124 38 22 51 chain 129287 chr11 135006516 + 38438603 38440227 L1PA7 6471 - 4 1626 28246 330 1 0 173 22 4 151 0 1 191 0 4 221 7 11 312 0 8 216 chain 37359 chr11 135006516 + 38441305 38441711 L1P1 4361 - 1203 1609 73017 406 chain 37102 chr11 135006516 + 38441711 38442125 L1PA2 6032 + 5618 6031 73379 269 1 0 144 chain 14577 chr11 135006516 + 38452241 38452409 MLT2A2 560 + 0 168 142663 168 chain 27349 chr11 135006516 + 38480302 38480663 THE1C 375 - 11 375 95119 15 1 0 55 0 2 107 1 2 66 1 2 115 chain 84658 chr11 135006516 + 38492881 38494048 L1PA8 5853 + 4677 5853 41653 328 3 9 73 0 1 138 2 1 222 0 10 56 1 0 46 1 0 47 2 0 70 65 63 19 3 2 91 chain 3389 chr11 135006516 + 38495798 38495840 MER58A 224 + 174 216 217321 42 chain 268402 chr11 135006516 + 38510283 38513585 L1PA6 6164 - 3 3276 15265 8 1 0 326 19 8 1041 0 1 475 0 2 399 0 1 4 4 5 194 0 1 452 0 4 17 28 0 7 0 1 17 2 1 5 0 2 4 1 0 298 chain 36445 chr11 135006516 + 38534289 38534753 L1PA6 6164 - 2 500 74301 157 7 5 20 1 37 279 chain 15176 chr11 135006516 + 38536715 38536935 L1PA8 5853 + 5647 5853 140835 32 1 0 14 1 0 47 2 1 105 11 0 7 chain 218434 chr11 135006516 + 38541110 38543594 L1PA4 6152 - 0 2512 17974 6 0 5 651 0 1 1001 0 1 4 1 0 125 0 4 620 7 25 69 chain 5507 chr11 135006516 + 38555384 38555451 MLT2A1 477 - 92 159 189972 67 chain 330152 chr11 135006516 + 38555463 38559720 HERVL-int 5654 - 1364 5654 12198 343 0 14 310 0 3 90 2 3 438 0 1 22 0 2 387 19 20 242 0 1 149 0 1 543 0 1 164 10 12 747 1 0 163 0 1 566 4 10 57 chain 81315 chr11 135006516 + 38587212 38588182 L1PA7 6471 - 10 979 43034 145 7 8 686 2 0 130 chain 3742 chr11 135006516 + 38594691 38594744 MADE1 96 - 27 96 211296 12 1 17 40 chain 35470 chr11 135006516 + 38601367 38601849 L1PA8 5853 - 0 477 75593 92 2 1 15 4 3 14 0 1 35 16 14 70 2 0 46 1 0 4 0 1 181 chain 29717 chr11 135006516 + 38611305 38611635 L1PA4 6152 + 5761 6091 85774 330 chain 60793 chr11 135006516 + 38617056 38617810 LTR17 781 - 12 781 52429 39 1 0 62 0 16 325 1 0 113 0 1 213 chain 39908 chr11 135006516 + 38623138 38623878 LTR17 781 + 0 757 69445 56 1 0 100 1 0 16 26 21 40 1 0 16 7 6 72 1 0 45 131 135 188 20 43 19 chain 175609 chr11 135006516 + 38625464 38627691 HERV17-int 4347 + 12 4338 21385 15 1 0 49 3 2 35 2 0 18 13 12 184 0 430 109 1 0 153 17 1 333 0 1 125 6 0 133 9 28 6 1 0 17 0 1 123 0 6 267 0 1672 27 1 0 146 0 1 332 1 0 100 chain 332204 chr11 135006516 + 38649383 38653645 HERVL-int 5654 + 1 4188 12120 55 4 5 8 1 0 219 0 1 155 8 0 857 6 18 137 11 0 388 8 6 117 0 3 431 10 12 122 0 1 142 3 4 826 76 0 60 0 2 618 chain 6987 chr11 135006516 + 38659006 38659093 L1MA3 4352 - 1005 1092 177559 87 chain 22137 chr11 135006516 + 38704648 38704934 AluY 311 + 0 292 119633 78 0 6 34 0 10 5 10 0 159 chain 118239 chr11 135006516 + 38717376 38719293 THE1A-int 1579 - 0 1579 31714 67 0 1 128 5 4 59 0 1 4 1 0 585 5 6 52 15 17 17 2 1 116 370 27 61 0 1 9 1 0 313 0 3 107 chain 7721 chr11 135006516 + 38733460 38733571 L1PA8 5853 + 5742 5853 172775 18 2 1 69 0 1 22 chain 500166 chr11 135006516 + 38747697 38754097 L1PA7 6471 - 75 6470 6832 377 7 5 253 21 9 14 33 0 117 1 0 81 6 7 471 2 1 112 2 0 236 9 10 68 0 1 330 0 2 257 5 4 37 4 0 507 2 1 333 1 0 5 0 1 517 0 16 43 2 0 61 0 2 744 19 24 656 20 41 427 6 9 4 1 0 5 1 0 63 0 1 23 1 0 5 6 7 104 0 2 249 3 4 149 chain 46446 chr11 135006516 + 38760411 38760917 L1PA3long 6157 + 5649 6156 61642 500 0 1 6 chain 209565 chr11 135006516 + 38761299 38763976 L1PA8 5853 - 0 2675 18519 23 3 12 54 5 4 72 1 0 9 1 0 24 7 3 44 2 0 46 1 0 293 0 1 251 6 8 562 2 1 350 0 1 89 0 2 22 6 2 34 2 0 293 25 26 405 2 1 43 chain 27398 chr11 135006516 + 38784456 38784752 L1PA2 6032 - 0 296 94976 296 chain 7788 chr11 135006516 + 38784752 38784854 L1P1 4361 - 456 559 172361 73 1 2 28 chain 32637 chr11 135006516 + 38792886 38793281 L1PA7 6471 - 4 396 79786 6 4 0 137 0 1 248 chain 115469 chr11 135006516 + 38795900 38797464 THE1B-int 1605 - 13 1605 32619 40 5 4 5 0 1 517 2 0 8 24 26 33 0 1 287 9 9 205 1 26 407 9 11 12 chain 74387 chr11 135006516 + 38806519 38807401 MER11D 897 + 2 897 46324 239 0 12 20 21 20 283 0 1 103 0 1 216 chain 32761 chr11 135006516 + 38811392 38811780 L1PA4 6152 + 5761 6151 79595 237 4 7 86 1 0 60 chain 192595 chr11 135006516 + 38832736 38835033 L1P1 4361 + 4 2283 19806 570 1 0 246 27 10 1453 chain 104206 chr11 135006516 + 38835034 38836194 L1PA3long 6157 + 4973 6142 35688 100 0 6 90 0 1 527 0 2 443 chain 113170 chr11 135006516 + 38842651 38843954 L1P1 4361 - 3042 4360 33325 291 1 0 357 8 24 646 chain 23503 chr11 135006516 + 38851885 38852173 AluSc 308 + 20 307 113115 84 0 1 191 2 0 11 chain 32701 chr11 135006516 + 38919495 38919919 MSTA 426 + 0 426 79683 103 0 1 99 3 5 37 1 0 181 chain 243013 chr11 135006516 + 38928296 38931326 L1PA7 6471 + 3406 6465 16614 117 8 0 21 0 4 71 0 19 420 0 1 260 5 8 345 0 4 273 1 0 29 0 1 642 1 0 45 0 1 6 1 0 183 0 3 196 3 4 214 0 1 31 9 11 149 chain 480762 chr11 135006516 + 38937009 38943321 L1PA7 6471 - 7 6468 7699 5 2 0 600 0 3 57 324 3 181 0 1 227 1 2 430 1 0 122 0 3 5 9 2 145 0 4 165 0 3 20 8 430 54 1 0 259 0 12 228 0 1 234 0 2 152 2 0 51 0 1 354 0 4 70 1 3 141 0 1 4 1 0 155 5 4 4 0 1 153 1 0 415 1 0 388 4 5 374 0 1 48 0 1 203 23 43 276 1 4 407 chain 248926 chr11 135006516 + 38962991 38965734 L1PA3long 6157 - 15 2762 16317 828 0 4 1915 chain 35350 chr11 135006516 + 38966932 38967421 L1PA8 5853 + 5368 5853 75732 194 1 0 48 2 0 11 1 2 121 1 0 16 11 10 83 chain 100665 chr11 135006516 + 39021236 39022337 L1PA2 6032 - 2 1103 36570 1101 chain 112975 chr11 135006516 + 39022337 39023559 L1PA2 6032 + 3694 4917 33384 122 0 1 1100 chain 116865 chr11 135006516 + 39027813 39029429 THE1B-int 1605 - 6 1605 32172 524 46 8 55 13 12 75 4 3 4 0 1 405 16 14 41 0 25 230 9 7 164 18 19 12 chain 29279 chr11 135006516 + 39044002 39044319 AluYb8 318 - 3 318 87654 189 2 0 126 chain 236538 chr11 135006516 + 39053630 39056251 L1PA3long 6157 + 3526 6153 16951 2608 0 6 13 chain 108370 chr11 135006516 + 39068661 39069839 L1PA2 6032 - 1 1181 34598 774 0 2 404 chain 149778 chr11 135006516 + 39092539 39095303 L1PB1 5432 + 3330 5413 24651 38 0 1 40 9 1 76 1 0 4 0 11 134 0 1 92 2 4 237 0 1 22 9 6 458 327 0 165 4 0 82 4 5 222 2 1 172 1 2 10 3 0 23 1 0 9 347 20 53 2 1 16 1 0 44 1 0 15 3 0 7 16 6 15 11 8 14 3 1 23 1 0 21 1 0 13 1 0 9 chain 6625 chr11 135006516 + 39100613 39101086 LTR12D 1347 + 436 1160 180270 66 372 623 35 chain 29696 chr11 135006516 + 39115484 39115795 AluYb8 318 - 7 318 85848 311 chain 87283 chr11 135006516 + 39132564 39133844 HSMAR1 1287 + 9 1287 40657 17 0 1 50 0 4 44 25 0 16 0 2 421 0 3 32 3 0 10 14 17 179 16 29 71 1 4 14 6 8 70 6 0 109 22 21 120 5 7 29 chain 10036 chr11 135006516 + 39141661 39141788 MSTA-int 1630 - 1076 1203 160401 127 chain 386016 chr11 135006516 + 39147481 39152668 HERVL-int 5654 + 809 5654 10574 100 0 1 43 1 0 129 0 1 41 6 5 156 3 0 188 58 34 49 0 1 5 0 1 77 0 11 247 0 1 306 0 2 635 1 10 62 8 0 131 0 1 5 1 0 126 0 1 362 2 10 313 0 1 51 326 0 136 2 3 210 14 0 23 0 4 10 0 7 904 18 0 203 0 4 235 chain 24865 chr11 135006516 + 39150604 39150910 AluY 311 + 9 308 105543 54 4 0 63 0 1 160 4 0 21 chain 43472 chr11 135006516 + 39178426 39178924 L1PA4 6152 - 14 506 64842 136 7 1 355 chain 23358 chr11 135006516 + 39209902 39210187 AluY 311 + 8 288 113882 68 0 6 44 11 0 162 chain 95899 chr11 135006516 + 39213427 39214670 LTR12C 1709 - 1 1709 37845 164 0 102 29 0 4 181 0 4 106 3 1 5 1 0 170 0 281 173 4 24 13 14 75 186 4 0 190 chain 20044 chr11 135006516 + 39252523 39252766 AluY 311 + 38 282 126994 91 1 2 151 chain 345896 chr11 135006516 + 39253956 39258473 L1PA8 5853 + 50 5849 11733 22 2 0 10 1 0 6 47 24 190 7 11 191 0 2 136 17 17 113 8 11 550 0 1 760 0 2 38 0 3 324 1 11 9 0 3 398 0 1 51 4 8 263 6 1275 28 4 4 49 0 1 151 0 7 14 0 2 269 5 4 75 3 6 113 0 1 357 1 0 47 2 0 69 25 23 40 2 1 19 1 0 89 chain 38843 chr11 135006516 + 39264626 39265074 L1PA4 6152 + 5691 6140 70956 389 0 1 59 chain 4359 chr11 135006516 + 39267830 39267879 MSTD 398 - 14 63 202453 49 chain 28508 chr11 135006516 + 39278616 39279301 THE1B-int 1605 + 1226 1600 91159 84 319 0 5 1 0 28 0 1 194 0 8 54 chain 19928 chr11 135006516 + 39279306 39279643 THE1B 368 + 0 356 127366 40 0 15 117 1 0 24 45 57 15 14 6 47 0 1 34 chain 24459 chr11 135006516 + 39288122 39288412 AluSp 311 - 12 302 107760 290 chain 68620 chr11 135006516 + 39292436 39293424 LTR12 884 + 0 869 48971 24 1 0 333 38 19 78 12 14 172 105 4 225 chain 6902 chr11 135006516 + 39293106 39293189 LTR12 884 + 550 633 178167 83 chain 26389 chr11 135006516 + 39314041 39314325 AluYa5 310 - 14 298 98454 92 0 1 77 1 0 114 chain 247095 chr11 135006516 + 39328763 39332706 L1PA7 6471 - 3 3137 16389 7 2 0 134 8 0 5 0 1 7 10 17 80 1 0 206 0 2 36 0 1 262 1 0 53 6 15 21 1 0 385 0 1 75 9 5 37 2 4 6 2 0 129 476 0 23 6 5 365 2 0 99 1 2 476 333 0 74 3 4 434 3 0 163 chain 19938 chr11 135006516 + 39330300 39330532 L1PA5 6144 - 2 234 127336 232 chain 15958 chr11 135006516 + 39330533 39330707 L1PA5 6144 + 5708 5882 138491 174 chain 33797 chr11 135006516 + 39332724 39333189 L1P2 5180 + 2048 2497 77940 232 0 2 5 1 0 40 34 17 153 chain 142796 chr11 135006516 + 39333194 39334905 LTR12C 1709 + 0 1709 25686 104 5 4 195 6 7 4 1 0 62 4 0 58 0 1 402 1 0 72 0 2 200 1 0 5 3 1 107 0 4 481 chain 113835 chr11 135006516 + 39350213 39351513 L1PA5 6144 - 6 1303 33139 144 7 0 693 0 4 456 chain 101786 chr11 135006516 + 39351515 39352676 L1PA5 6144 + 3687 4849 36322 496 0 1 665 chain 98663 chr11 135006516 + 39353848 39355182 LTR12C 1709 - 0 1709 37107 59 0 131 43 1 0 4 56 27 139 1 5 73 20 13 95 2 0 8 1 0 104 0 278 433 0 1 32 0 1 263 chain 11805 chr11 135006516 + 39359266 39359419 MER50 708 + 454 606 153008 31 1 0 121 chain 5008 chr11 135006516 + 39413035 39413453 L1PA13 3608 - 111 518 46031 11 0 4 12 1 0 22 2 0 4 2 0 48 8 5 29 1 0 27 1 0 61 2 0 114 1 0 32 2 0 38 chain 442316 chr11 135006516 + 39413491 39418533 L1PA4 6152 - 16 5069 8987 443 0 2 129 2 1 517 0 1 262 0 1 509 0 1 142 0 3 174 5 8 62 1 0 568 8 0 733 0 5 1154 1 6 332 chain 9009 chr11 135006516 + 39418540 39419292 L1PA13 3608 - 553 1304 46031 201 1 0 173 16 14 251 6 8 104 chain 11225 chr11 135006516 + 39422204 39422423 L1MA5A 2387 + 2107 2294 155328 49 2 0 25 1 0 34 3 0 14 0 3 5 48 19 38 chain 45348 chr11 135006516 + 39435351 39435922 L1PA7 6471 + 5877 6456 62656 110 0 3 216 4 2 5 1 0 71 1 8 23 0 1 140 chain 122601 chr11 135006516 + 39452162 39453641 L1PA7 6471 + 4979 6470 30192 294 1 2 324 0 4 22 0 5 377 10 12 117 0 1 87 6 5 241 chain 16112 chr11 135006516 + 39463223 39463449 LTR12C 1709 - 733 943 138021 139 1 0 64 15 0 7 chain 4325 chr11 135006516 + 39463486 39463534 LTR12C 1709 - 876 924 202899 48 chain 8412 chr11 135006516 + 39471024 39471157 THE1C 375 - 239 375 168781 27 2 3 40 9 11 55 chain 53543 chr11 135006516 + 39497157 39497779 L1PA5 6144 - 12 638 56650 308 4 8 310 chain 134303 chr11 135006516 + 39506124 39507613 L1PA3long 6157 - 0 1490 27150 1469 6 7 14 chain 85531 chr11 135006516 + 39514851 39515951 MER11A 1151 + 0 1151 41335 79 21 31 184 0 11 21 0 2 60 0 1 28 4 0 132 11 10 297 9 6 6 0 35 91 0 1 90 1 0 66 chain 137263 chr11 135006516 + 39541987 39543686 L1PA7 6471 + 4768 6468 26595 382 3 0 5 0 3 94 5 6 259 3 2 102 1 4 125 0 1 564 2 0 78 0 2 64 3 0 9 chain 349558 chr11 135006516 + 39554226 39558426 L1PA6 6164 - 2 6100 11622 717 4 0 124 0 6 426 0 6 49 0 1 133 0 1871 29 0 2 413 4 0 25 0 1 33 0 1 477 0 3 409 0 5 177 0 11 1000 2 1 178 chain 6647 chr11 135006516 + 39568587 39568682 L1PB 1623 + 780 865 180116 73 10 0 12 chain 22239 chr11 135006516 + 39569143 39569532 THE1D-int 1627 + 12 345 119173 24 7 6 139 7 3 108 70 19 34 chain 3680 chr11 135006516 + 39569444 39569484 THE1D-int 1627 + 256 296 212247 40 chain 68608 chr11 135006516 + 39581763 39582798 LTR12 884 + 0 884 48979 25 1 0 37 41 0 15 25 0 165 5 1 87 0 25 22 2 0 349 103 0 158 chain 309740 chr11 135006516 + 39582832 39586653 HERV9-int 5642 + 6 4819 13013 593 6 5 191 5 4 102 1 86 42 84 0 78 3 0 165 4 6 351 0 18 1237 0 37 89 7 942 408 1 0 157 0 5 297 chain 67122 chr11 135006516 + 39587755 39588839 LTR12 884 + 0 884 49608 24 1 0 70 0 2 250 106 0 31 2 0 27 13 14 179 103 0 141 12 8 72 0 13 53 chain 2332 chr11 135006516 + 39588139 39588206 LTR12 884 + 344 392 231560 21 1 0 10 28 10 7 chain 57719 chr11 135006516 + 39624020 39624703 L1HS 6032 - 4073 4751 54041 36 4 0 132 1 0 147 4 5 4 1 0 354 chain 355235 chr11 135006516 + 39624703 39628668 L1PA3long 6157 + 2186 6157 11467 398 0 1 104 2 1 478 0 3 6 3 0 6 2 0 79 2 1 426 0 1 278 1 5 29 0 3 782 0 1 1369 chain 62275 chr11 135006516 + 39631089 39631780 L1PA3long 6157 + 5466 6157 51768 691 chain 68792 chr11 135006516 + 39642082 39642838 L1PA4 6152 - 1 758 48901 625 0 1 131 chain 120863 chr11 135006516 + 39654882 39656265 L1PA5 6144 - 1942 3327 30708 250 0 2 1133 chain 168638 chr11 135006516 + 39656265 39658190 L1PA5 6144 + 4208 6143 22205 1086 0 3 674 3 1 17 0 9 145 chain 25266 chr11 135006516 + 39681705 39682005 AluY 311 + 11 311 103384 300 chain 11940 chr11 135006516 + 39735965 39736096 L1PA7 6471 - 273 404 152445 131 chain 21674 chr11 135006516 + 39736101 39736363 L1PA7 6471 + 6211 6468 121489 99 1 0 151 4 0 7 chain 123460 chr11 135006516 + 39736916 39738479 THE1A-int 1579 + 0 1578 29896 332 0 6 245 0 13 14 5 3 198 5 0 319 3 4 328 7 0 6 6 14 17 8 9 70 chain 30849 chr11 135006516 + 39755675 39756097 LTR7B 505 + 0 495 82772 108 0 10 57 0 38 12 3 27 26 0 2 85 1 0 23 0 1 52 18 17 37 chain 30017 chr11 135006516 + 39762181 39762603 LTR7B 505 + 0 495 84745 108 0 10 57 15 77 28 0 2 80 1 0 26 0 1 52 14 13 41 chain 535408 chr11 135006516 + 39776589 39782735 L1PA4 6152 + 0 6151 3535 340 2 0 215 0 5 6 9 0 7 0 3 182 0 19 57 17 0 141 0 1 420 9 0 9 9 18 759 0 2 132 0 4 48 5 4 3779 chain 14142 chr11 135006516 + 39784138 39784296 L1PA4 6152 + 5994 6152 144066 158 chain 28385 chr11 135006516 + 39793529 39793834 AluYa5 310 - 9 310 91642 178 4 0 123 chain 29367 chr11 135006516 + 39805141 39805450 AluYa5 310 - 1 310 87216 309 chain 13770 chr11 135006516 + 39812336 39812702 THE1B 368 + 0 368 145363 19 1 0 4 1 0 85 26 27 42 72 76 53 49 48 14 chain 150265 chr11 135006516 + 39819022 39820761 L1PA5 6144 - 0 1743 24574 171 1 2 502 0 2 90 0 6 70 0 4 850 9 0 46 chain 143019 chr11 135006516 + 39820761 39822414 L1PA5 6144 + 2740 4397 25651 50 17 20 469 1 0 1000 0 2 116 chain 275707 chr11 135006516 + 39832222 39836200 L1PA10 4194 + 182 4150 14886 5 2 0 13 0 1 4 7 1 10 22 16 9 1 0 4 6 5 13 4 0 4 0 1 4 0 1 13 1 0 8 48 52 10 1 0 5 16 10 9 1 0 10 6 0 6 4 0 7 3 0 69 31 29 67 0 7 103 1 2 48 0 1 178 38 18 466 2 0 135 4 3 52 0 2 142 8 0 27 1 0 5 5 2 244 2 1 186 0 3 275 0 2 156 0 49 28 4 8 22 1 0 43 5 6 84 0 1 115 1 2 138 6 8 34 0 1 536 1 0 4 0 1 376 19 11 23 4 1 33 chain 24672 chr11 135006516 + 39853815 39854103 AluSp 311 - 14 302 106598 288 chain 131616 chr11 135006516 + 39861126 39862612 L1PA4 6152 - 0 1494 27712 7 0 8 1479 chain 539516 chr11 135006516 + 39868206 39874196 L1PA2 6032 + 1 6021 2899 1167 0 1 237 2 1 1353 0 11 272 1 0 350 0 1 448 0 4 26 1 4 730 0 12 1403 chain 252918 chr11 135006516 + 39898130 39901266 L1PA7 6471 + 3297 6459 16085 247 0 4 136 3 4 148 0 1 56 4 0 188 3 0 5 0 3 8 0 1 107 0 1 7 0 3 45 1 0 211 0 4 9 0 1 299 0 1 266 0 13 534 5 4 18 1 0 79 0 2 8 0 1 597 18 18 133 chain 525980 chr11 135006516 + 39902618 39908579 L1PA3long 6157 + 6 6142 4589 144 18 19 75 1 0 496 0 169 1416 0 1 2173 0 4 803 0 1 835 chain 445019 chr11 135006516 + 39909807 39914940 L1PA4 6152 + 1004 6143 8902 39 0 2 476 4 0 7 0 1 442 0 1 721 0 5 10 5 0 37 1 2 524 3 0 236 0 1 1528 0 1 337 6 12 757 chain 71401 chr11 135006516 + 39923290 39924133 L1PA7 6471 + 5618 6461 47746 843 chain 26863 chr11 135006516 + 39924947 39925232 AluYa5 310 - 2 287 96763 285 chain 28980 chr11 135006516 + 39942554 39942930 THE1A-int 1579 + 0 381 89094 15 1 3 95 0 3 265 chain 27539 chr11 135006516 + 39944451 39944806 THE1A 353 + 0 353 94539 15 3 1 31 0 1 46 1 0 259 chain 19533 chr11 135006516 + 39945503 39945774 AluY 311 + 35 294 128560 97 0 1 115 7 0 29 10 4 13 chain 90427 chr11 135006516 + 39969386 39970939 L1PA13 3608 + 138 1684 39500 26 17 19 18 55 45 39 12 10 36 10 20 64 1 0 4 45 45 17 1 0 11 16 14 10 2 0 16 1 0 99 2 0 207 1 4 13 9 10 130 0 2 22 58 59 18 18 11 201 2 3 39 15 16 318 chain 5287 chr11 135006516 + 39989052 39989129 HUERS-P2-int 2744 + 983 1061 192144 41 8 9 28 chain 20066 chr11 135006516 + 39994107 39994472 MER51B 395 - 0 375 126934 105 12 14 12 1 54 45 55 0 43 26 26 37 0 10 29 chain 6132 chr11 135006516 + 40002871 40003011 L1PA15 4387 - 35 165 184153 14 16 11 12 3 1 44 17 14 34 chain 521252 chr11 135006516 + 40005564 40011743 L1PA5 6144 + 0 6141 5033 289 10 1 514 14 0 23 18 1 200 1 2 4 1 0 35 7 10 90 9 0 790 1 0 410 8 0 2391 0 22 512 1 0 841 4 0 6 chain 57589 chr11 135006516 + 40011796 40012498 LTR30 714 + 0 714 54192 477 8 21 64 1 0 152 chain 36161 chr11 135006516 + 40021199 40021649 MER4A1 472 + 1 472 74691 225 6 27 219 chain 96095 chr11 135006516 + 40035049 40036131 L1PA4 6152 + 5058 6143 37795 373 0 3 709 chain 16513 chr11 135006516 + 40039222 40039529 THE1B 368 + 0 356 136883 44 0 15 111 2 1 11 71 106 68 chain 58129 chr11 135006516 + 40050542 40051236 LTR30 714 + 11 714 53912 213 1 10 215 11 12 164 1 0 89 chain 55710 chr11 135006516 + 40056684 40057457 MER4E1 777 + 12 769 55299 9 7 0 38 7 6 124 2 0 7 11 13 18 0 1 75 1 0 239 13 5 222 chain 274930 chr11 135006516 + 40060249 40064323 L1PA5 6144 + 1526 4730 14928 667 0 2 145 882 0 271 0 1 352 1 2 71 0 1 132 1 0 335 0 4 366 1 0 4 0 1 401 0 2 68 0 2 202 0 1 66 1 0 108 chain 68899 chr11 135006516 + 40061102 40061943 L1PA5 6144 - 4 869 48821 334 10 11 353 0 23 144 chain 118266 chr11 135006516 + 40064323 40065712 L1PA5 6144 + 4732 6124 31704 562 2 3 439 0 1 263 4 5 119 chain 12283 chr11 135006516 + 40068173 40068345 Tigger1 2417 - 1923 2090 151072 155 4 0 8 1 0 4 chain 33522 chr11 135006516 + 40070413 40070877 MER9a3 513 + 0 492 78366 18 0 2 150 3 13 70 6 5 50 8 29 97 0 1 37 8 3 17 chain 17181 chr11 135006516 + 40091726 40092080 THE1B 368 - 0 368 135086 118 130 146 37 2 0 67 chain 26465 chr11 135006516 + 40099618 40099989 THE1C 375 - 0 375 98184 24 5 4 11 2 1 59 0 1 88 2 0 5 3 7 5 1 0 23 0 4 143 chain 264481 chr11 135006516 + 40122404 40126799 MER61-int 3695 + 0 3690 15462 46 1 0 224 10 9 38 0 2 38 0 4 35 0 1 110 3 15 13 8 7 66 0 4 26 2 0 10 0 1 130 0 3 7 0 4 101 309 0 378 436 20 4 0 1 339 0 6 34 3 4 201 0 1 273 0 4 9 9 5 12 0 3 24 1 5 12 2 0 189 0 1 27 0 1 168 2 0 62 0 2 89 1 0 85 16 15 116 1 0 31 27 28 109 2 0 9 2 0 170 40 16 142 0 1 83 0 1 4 6 13 10 6 8 76 3 0 5 chain 61614 chr11 135006516 + 40144796 40145656 L1MA3 4352 + 2225 3099 52072 19 4 8 14 0 4 43 1 0 53 0 4 79 1 0 67 5 9 44 18 13 473 12 17 27 chain 6319 chr11 135006516 + 40152135 40152224 MER20 218 - 100 195 182646 27 4 10 58 chain 385081 chr11 135006516 + 40174559 40179956 L1PB1 5432 + 19 5424 10605 27 17 18 184 1 0 6 0 2 189 4 5 94 1 0 7 0 1 5 2 1 50 1 0 207 3 2 66 0 12 362 22 118 20 2 1 6 2 0 7 24 9 202 0 10 339 7 8 194 11 6 117 0 1 160 0 1 67 1 2 317 1 0 96 4 8 447 2 6 167 0 1 161 4 0 6 63 0 8 0 1 192 10 11 218 0 4 58 1 2 203 5 6 184 2 0 22 0 1 274 16 13 36 4 2 134 15 13 18 1 0 13 16 11 9 2 0 40 1 0 4 0 1 8 2 1 16 1 0 44 1 0 15 3 0 7 18 8 16 8 5 14 3 1 23 1 0 4 0 1 9 8 7 13 1 0 16 1 0 4 chain 180620 chr11 135006516 + 40213724 40215995 L1P3 4156 + 3 2295 20930 83 1 2 137 0 15 9 14 13 57 2 1 96 0 1 680 0 1 4 1 0 52 0 1 895 6 7 103 0 4 131 chain 29105 chr11 135006516 + 40216001 40216328 L1PA7 6471 + 6141 6468 88526 327 chain 37667 chr11 135006516 + 40243100 40243562 LTR2 463 + 0 463 72590 359 15 16 88 chain 58810 chr11 135006516 + 40280728 40281365 L1PA3long 6157 - 766 1403 53518 637 chain 67506 chr11 135006516 + 40281365 40282100 L1PA3long 6157 + 5408 6143 49444 735 chain 103473 chr11 135006516 + 40283266 40284543 L1PA7 6471 + 5187 6470 35875 86 0 2 58 0 7 281 1 0 79 2 3 47 25 22 76 1 2 286 0 1 321 3 1 11 chain 23882 chr11 135006516 + 40362729 40363007 L1PA4 6152 - 257 533 111011 55 1 0 28 1 0 193 chain 19236 chr11 135006516 + 40363007 40363239 L1PA4 6152 + 5899 6143 129419 56 0 12 32 1 0 4 0 1 139 chain 23348 chr11 135006516 + 40383078 40383520 L1PA13 3608 + 3144 3548 113934 16 1 0 71 0 4 39 2 0 41 0 6 14 19 0 56 8 5 47 2 0 5 2 0 20 1 0 19 0 3 7 18 7 14 1 0 6 7 1 10 4 1 12 chain 21954 chr11 135006516 + 40407147 40407409 AluSc 308 + 11 273 120405 262 chain 50270 chr11 135006516 + 40420696 40421243 L1PA3long 6157 + 5610 6157 58809 547 chain 31325 chr11 135006516 + 40452326 40452660 L1PA2 6032 + 5698 6032 81948 334 chain 80071 chr11 135006516 + 40469809 40470783 L1PA7 6471 - 7 993 43556 131 0 1 238 1 0 4 0 2 115 0 1 348 1 2 19 0 4 76 0 4 41 chain 110131 chr11 135006516 + 40473363 40474733 L1PA4 6152 + 11 6143 34173 146 13 7 122 0 683 16 0 5 25 0 4080 1048 chain 497633 chr11 135006516 + 40490636 40497151 L1PA7 6471 + 3 6461 6975 406 1 2 1218 1 3 629 1 0 238 4 36 97 6 0 52 0 195 17 0 3 197 1 5 50 300 0 398 0 4 58 0 1 221 7 8 82 0 1 56 0 1 15 4 1 11 1 4 40 0 1 216 0 1 98 2 1 291 0 1 250 1 2 42 3 1 25 5 6 32 0 1 21 1 21 235 2 1 320 1 0 100 0 3 12 22 1 355 0 1 218 7 8 145 chain 9320 chr11 135006516 + 40500100 40500213 L1PA6 6164 - 4 118 163956 48 0 1 65 chain 129552 chr11 135006516 + 40539194 40540796 L1PA7 6471 + 4853 6466 28189 96 10 0 246 1 2 417 0 3 83 0 2 16 3 6 118 3 5 163 1 7 150 0 4 295 chain 9186 chr11 135006516 + 40541228 40541341 Tigger1 2417 + 1536 1649 164629 113 chain 20407 chr11 135006516 + 40554315 40554673 THE1D 372 - 0 354 125872 133 2 8 6 1 0 26 13 15 71 22 33 6 3 0 24 18 0 18 1 0 14 chain 65466 chr11 135006516 + 40559810 40560588 L1PA5 6144 - 125 899 50350 37 0 1 349 0 1 35 12 0 152 0 2 147 0 4 46 chain 25306 chr11 135006516 + 40575510 40576281 L1P4 1494 - 208 971 103189 58 384 370 74 2 0 25 8 9 188 1 12 7 4 0 20 chain 10832 chr11 135006516 + 40577143 40577324 MER30B 195 - 1 184 156857 38 3 0 61 33 38 46 chain 548494 chr11 135006516 + 40607022 40613051 L1PA2 6032 - 1 6028 1642 576 1 0 5199 2 1 251 chain 78286 chr11 135006516 + 40637576 40638459 L1PA4 6152 + 5257 6140 44381 883 chain 87804 chr11 135006516 + 40670318 40671440 MER11A 1151 - 1 1151 40447 208 0 1 5 0 1 7 1 0 85 4 38 114 6 9 52 3 0 334 1 3 63 1 0 31 2 0 20 9 1 68 0 2 108 chain 24627 chr11 135006516 + 40686335 40686618 L1PA5 6144 - 9 292 106846 283 chain 15119 chr11 135006516 + 40703291 40703633 L1PB1 5432 + 5110 5420 140989 4 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 41 43 30 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3989 chr11 135006516 + 40722221 40722264 tRNA-Gln-CAG 43 - 0 43 207557 43 chain 510792 chr11 135006516 + 40726761 40732877 L1PA6 6164 - 2 6164 6085 527 1 2 318 3 0 671 0 1 136 5 3 256 0 1 214 0 1 509 1 0 232 1 2 99 0 1 4 2 0 502 0 5 206 3 0 83 5 13 698 0 17 970 0 15 166 2 1 105 1 0 12 13 21 199 27 27 145 chain 31562 chr11 135006516 + 40751445 40751817 L1PA2 6032 + 5658 6032 81540 57 0 1 157 1 0 7 0 4 135 2 0 13 chain 78307 chr11 135006516 + 40756713 40757585 L1PA3long 6157 - 0 879 44323 331 0 3 515 0 4 26 chain 84328 chr11 135006516 + 40757585 40758675 L1PA7 6471 - 21 1127 41723 700 0 1 135 2 1 42 27 43 184 chain 92693 chr11 135006516 + 40758675 40759803 L1PA7 6471 + 4214 5342 38750 272 7 8 173 5 3 24 5 6 642 chain 34909 chr11 135006516 + 40771960 40772354 L1PA4 6152 + 5747 6143 76333 232 0 1 60 0 1 102 chain 62160 chr11 135006516 + 40813994 40814693 L1PA5 6144 + 5442 6140 51824 30 1 0 668 chain 500581 chr11 135006516 + 40866707 40873141 L1PA7 6471 - 1 6467 6804 240 25 0 530 0 2 484 2 3 149 1 21 21 0 1 69 1 0 273 0 8 48 1 0 96 0 4 35 0 1 112 0 1 95 4 3 438 12 0 128 0 5 161 0 5 7 20 22 354 0 4 449 1 0 62 1 2 55 1 0 15 0 2 41 0 4 454 0 5 32 3 0 132 0 3 84 1 0 4 0 1 32 0 5 6 0 3 327 3 1 46 1 0 317 1 12 74 0 1 16 4 0 200 0 1 101 7 6 61 8 10 173 4 0 10 3 0 399 chain 4277 chr11 135006516 + 40891923 40892001 MER54B 801 + 4 81 203510 20 16 15 42 chain 85054 chr11 135006516 + 40892012 40893074 MER11B 1079 + 11 1079 41494 248 3 0 167 0 15 104 0 1 14 38 35 96 0 1 78 6 0 283 7 8 18 chain 3808 chr11 135006516 + 40893100 40893142 Charlie3 2679 + 1380 1422 210272 42 chain 45630 chr11 135006516 + 40905459 40906095 L1PA8 5853 - 0 629 62375 93 1 0 19 2 1 9 3 2 40 2 1 9 1 0 70 5 4 29 31 30 322 chain 536729 chr11 135006516 + 40932119 40938258 L1PA4 6152 + 6 6152 3348 65 1 4 3369 14 15 795 1 0 97 0 4 1797 chain 93246 chr11 135006516 + 40969920 40970939 L1PA3long 6157 - 0 1020 38583 4 0 1 1015 chain 55154 chr11 135006516 + 40970939 40971545 L1P1 4361 + 1653 2259 55555 606 chain 153057 chr11 135006516 + 40985922 40987645 L1PA4 6152 - 1 1728 24222 766 0 1 75 0 1 7 0 1 871 0 1 4 chain 3333 chr11 135006516 + 40993996 40994033 MSTA-int 1630 + 1587 1624 218362 37 chain 30103 chr11 135006516 + 41007027 41007340 AluYb8 318 - 5 318 84483 313 chain 25382 chr11 135006516 + 41013000 41013473 MER1A 529 - 40 496 102770 18 38 30 23 1 0 16 0 3 159 30 24 41 3 0 5 4 7 35 0 1 5 3 2 23 22 17 47 chain 3634 chr11 135006516 + 41026295 41026334 MER4D0 881 + 768 807 213097 39 chain 10013 chr11 135006516 + 41026696 41026858 MSTB 430 + 0 186 160518 114 30 54 18 chain 81383 chr11 135006516 + 41040624 41041638 L1PA8A 6298 - 7 1031 43016 105 0 1 38 0 2 83 3 0 7 0 3 559 2 5 141 0 4 76 chain 36034 chr11 135006516 + 41071900 41072405 L1PA8 5853 - 54 586 74856 8 0 6 16 28 26 54 1 2 8 2 1 68 2 0 48 1 0 88 0 1 95 0 25 86 chain 34792 chr11 135006516 + 41077817 41078344 L1PA15 4387 + 3530 4045 76489 5 1 0 34 15 10 234 0 2 12 5 0 27 0 1 32 23 20 25 1 0 113 chain 212838 chr11 135006516 + 41089977 41092965 L1PA8 5853 + 2892 5853 18303 21 0 1 21 0 4 27 0 5 156 43 11 75 7 0 7 37 24 155 1 2 19 7 8 60 2 1 418 0 2 58 5 6 140 0 1 5 0 1 4 1 0 216 2 1 346 0 1 310 10 6 6 0 3 69 0 2 190 0 13 196 1 2 79 1 0 46 2 0 13 4 6 50 1 0 6 4 3 48 8 7 17 2 1 92 chain 18017 chr11 135006516 + 41122157 41122571 L1PREC2 3366 + 2635 3048 132811 47 0 3 28 1 0 38 3 1 42 14 13 43 1 0 4 3 0 13 52 39 15 3 1 24 41 24 11 0 36 31 chain 29794 chr11 135006516 + 41144811 41145121 AluYa5 310 - 0 310 85485 310 chain 28035 chr11 135006516 + 41170773 41171086 AluYa5 310 + 0 308 92874 97 2 0 107 3 0 104 chain 130128 chr11 135006516 + 41191721 41193193 L1PA4 6152 + 4556 6033 28062 607 0 1 130 0 1 389 4 2 76 0 4 51 1 2 214 chain 24419 chr11 135006516 + 41204343 41204716 THE1B 368 - 0 368 107972 61 8 5 92 12 10 27 3 1 117 6 8 47 chain 27046 chr11 135006516 + 41206310 41206698 THE1B 368 - 2 368 96128 59 13 5 107 12 0 19 6 4 172 chain 24281 chr11 135006516 + 41236002 41236309 AluY 311 + 3 292 108762 123 18 0 166 chain 96916 chr11 135006516 + 41252197 41253315 L1PA5 6144 + 5024 6134 37578 196 0 1 73 8 0 384 3 1 273 0 2 9 1 0 171 chain 165601 chr11 135006516 + 41324675 41327471 SVA_F 1814 + 10 1812 22568 920 1003 0 18 0 14 39 1 0 10 1 0 164 2 0 12 1 0 625 chain 5811 chr11 135006516 + 41325601 41325689 SVA_F 1814 + 937 1089 100791 5 0 64 83 chain 34225 chr11 135006516 + 41325689 41326068 SVA_F 1814 + 898 1291 77317 50 3 18 308 1 0 17 chain 3845 chr11 135006516 + 41326489 41326598 SVA_F 1814 + 1015 1124 82001 109 chain 17739 chr11 135006516 + 41336122 41336355 L1PA6 6164 + 5928 6162 133594 80 11 12 142 chain 10619 chr11 135006516 + 41417487 41417699 MER30 238 + 0 236 157737 70 63 88 32 1 0 46 chain 4272 chr11 135006516 + 41442607 41442657 MIR 256 + 100 150 203586 50 chain 28190 chr11 135006516 + 41449219 41449660 LTR7 482 + 0 469 92341 101 70 14 17 0 51 41 5 37 44 0 1 163 chain 27076 chr11 135006516 + 41450529 41450909 THE1C 375 + 2 375 96021 77 22 23 71 7 0 176 1 0 26 chain 4914 chr11 135006516 + 41485071 41485132 MLT1A0 366 + 80 141 196132 61 chain 8250 chr11 135006516 + 41495411 41495591 MER2 342 - 129 307 169681 101 64 62 15 chain 15302 chr11 135006516 + 41499066 41499239 LTR17 781 - 455 630 140488 128 0 2 45 chain 5560 chr11 135006516 + 41511738 41511800 L1PB4 2604 + 1091 1153 189475 62 chain 6379 chr11 135006516 + 41518851 41519020 Tigger7 736 + 89 262 182188 58 77 81 34 chain 22576 chr11 135006516 + 41548245 41548539 AluYf4 310 - 4 300 117690 102 0 1 15 1 2 29 11 8 5 0 3 131 chain 499491 chr11 135006516 + 41566283 41572467 L1PA6 6164 + 0 6162 6863 64 5 13 5 2 0 328 0 1 6 1 0 120 1 2 78 7 18 320 0 1 766 1 0 491 43 7 101 27 13 810 1 2 43 0 1 76 4 7 185 2 1 70 0 1 131 12 0 988 12 11 220 0 1 433 0 1 83 1 0 428 0 1 144 0 2 29 4 18 142 chain 122618 chr11 135006516 + 41574232 41575884 THE1A-int 1579 + 0 1579 30187 12 3 5 36 0 1 235 74 0 200 0 1 160 0 1 4 8 10 482 15 9 423 chain 17975 chr11 135006516 + 41575884 41576269 THE1A 353 + 0 353 132927 47 0 1 32 53 0 12 68 89 17 1 0 7 0 3 6 3 0 139 chain 4918 chr11 135006516 + 41603225 41603303 MER3 215 + 28 107 196070 38 9 10 31 chain 8607 chr11 135006516 + 41605408 41605534 MER85 139 - 0 135 167689 22 2 1 17 3 13 82 chain 449856 chr11 135006516 + 41621177 41626931 L1PA6 6164 + 0 6162 8770 88 0 735 79 1 5 814 2 1 442 0 1 47 0 2 110 0 2 198 0 2 250 9 4 403 0 2 513 4 0 245 1 2 858 41 9 388 0 8 107 0 3 514 298 0 180 13 5 139 4 0 6 chain 13586 chr11 135006516 + 41633662 41633822 L1PA5 6144 + 5980 6140 146030 160 chain 33538 chr11 135006516 + 41635859 41636326 LTR19A 502 + 2 502 78333 189 11 50 63 1 0 97 11 7 23 2 0 58 0 1 12 chain 16870 chr11 135006516 + 41644857 41645071 LTR12C 1709 + 932 1192 135914 139 0 47 31 1 0 43 chain 5002 chr11 135006516 + 41645084 41645242 LTR12C 1709 + 879 1037 151463 38 0 37 50 43 6 27 chain 25080 chr11 135006516 + 41653846 41654150 AluY 311 + 0 311 104405 57 1 8 246 chain 24383 chr11 135006516 + 41665753 41666315 L1PB1 5432 - 10 520 108181 18 1 0 13 1 0 21 91 74 6 4 0 8 1 0 45 19 17 52 45 29 4 1 0 17 1 0 4 26 18 184 chain 500047 chr11 135006516 + 41666644 41673075 L1PA7 6471 - 14 6468 6839 509 4 2 244 0 2 76 0 3 194 0 7 85 3 4 119 0 1 19 3 1 552 0 1 150 0 1 274 7 8 626 0 5 395 0 1 69 0 8 34 0 2 355 0 4 73 0 1 298 0 1 270 40 4 281 5 6 396 0 4 115 9 0 405 0 1 4 7 6 40 7 11 16 20 22 108 0 7 16 6 1 6 0 5 32 1 0 335 4 5 184 8 23 27 chain 4794 chr11 135006516 + 41676354 41676421 L1MDa 1598 - 374 440 197420 12 1 0 54 chain 62161 chr11 135006516 + 41709863 41710546 L1PA4 6152 + 5469 6152 51823 683 chain 44382 chr11 135006516 + 41716651 41717126 L1PA2 6032 - 0 475 63712 475 chain 58375 chr11 135006516 + 41717126 41717749 L1PA2 6032 + 4918 5541 53762 623 chain 17667 chr11 135006516 + 41721783 41722150 THE1B 368 - 0 368 133780 18 45 44 56 25 23 12 46 50 165 chain 4578 chr11 135006516 + 41727548 41727985 MER67C 710 - 468 638 199901 12 0 1 27 359 88 34 0 3 5 chain 9307 chr11 135006516 + 41737789 41737904 MER50B 698 - 43 163 164034 16 0 5 99 chain 3566 chr11 135006516 + 41739778 41739816 MER72 723 - 0 38 214198 38 chain 441937 chr11 135006516 + 41743303 41748631 L1PA6 6164 - 7 5390 8999 572 0 1 151 0 4 108 0 1 24 0 4 481 4 0 8 54 0 154 2 0 178 0 3 352 4 1 570 1 2 353 0 1 94 1 0 536 0 1 380 1 0 321 0 1 224 0 1 382 0 1 167 1 2 128 0 83 53 1 18 23 chain 2532 chr11 135006516 + 41749257 41749415 LTR12C 1709 - 683 722 232738 24 119 0 15 chain 3589 chr11 135006516 + 41749467 41749506 LTR12C 1709 - 651 690 213845 39 chain 23412 chr11 135006516 + 41757980 41758371 MSTA 426 - 18 410 113580 143 17 17 41 11 9 17 39 43 6 1 0 116 chain 333446 chr11 135006516 + 41762655 41766460 L1PA4 6152 + 2337 6152 12069 1194 0 1 79 1 0 431 0 1 308 0 6 579 0 2 1070 0 1 143 chain 15196 chr11 135006516 + 41770308 41770630 L1PB1 5432 - 10 314 140783 18 2 1 11 1 0 22 1 0 24 2 0 9 14 11 18 11 12 16 1 0 39 11 10 10 2 1 52 2 0 9 2 0 3 2 0 9 2 1 11 1 0 17 chain 120209 chr11 135006516 + 41777616 41778970 L1PA4 6152 - 0 1363 30977 6 0 5 149 0 1 595 0 3 604 chain 46702 chr11 135006516 + 41791407 41791920 MER9a2 513 - 0 513 61455 513 chain 74135 chr11 135006516 + 41795565 41796598 MER11A 1151 - 0 1151 46444 163 6 7 60 0 1 36 18 0 21 9 16 11 0 26 17 0 1 102 5 6 131 8 15 9 6 0 85 6 7 109 0 2 19 0 1 12 4 0 66 1 0 74 0 99 55 chain 54883 chr11 135006516 + 41799152 41800243 MER4E1 777 + 2 769 55779 23 11 1 383 330 0 132 3 0 5 18 12 61 0 25 125 chain 23611 chr11 135006516 + 41799578 41799852 L1PA5 6144 + 5860 6134 112517 274 chain 127915 chr11 135006516 + 41808791 41810341 LTR12C 1709 - 0 1709 28594 481 0 4 106 3 1 6 2 0 115 0 159 222 14 15 97 1 0 4 6 7 51 1 0 441 chain 29986 chr11 135006516 + 41822295 41822613 AluYb8 318 + 0 317 84851 190 1 0 127 chain 21541 chr11 135006516 + 41839927 41840271 THE1B 368 + 0 348 122001 169 1 0 9 62 67 103 chain 24833 chr11 135006516 + 41868190 41868505 AluY 311 + 0 311 105705 133 10 6 172 chain 14722 chr11 135006516 + 41870599 41870776 MER49 923 + 586 763 142193 177 chain 70826 chr11 135006516 + 41908630 41909423 L1PA3long 6157 + 5361 6156 48002 788 0 2 5 chain 377851 chr11 135006516 + 41933627 41939006 L1PA8 5853 - 3 5375 10819 90 1 0 19 2 1 38 29 32 25 0 14 2 14 0 21 3 1 43 1 0 256 17 23 272 5 3 283 1 2 326 1 0 65 1 0 545 0 1 17 0 1 34 9 12 473 24 17 13 1 0 228 0 2 58 0 4 31 1 2 25 0 1 130 1 2 556 13 14 88 0 1 61 3 1 310 0 1 631 19 20 208 53 54 19 89 93 18 11 12 44 106 84 45 chain 11868 chr11 135006516 + 41986527 41986669 L1PA5 6144 - 30 172 152746 142 chain 33859 chr11 135006516 + 41995929 41996309 L1PA3long 6157 - 1 380 77843 328 1 0 51 chain 42739 chr11 135006516 + 42000508 42001046 LTR10F 562 + 0 562 65735 81 5 10 71 0 11 16 0 11 31 3 0 331 chain 11694 chr11 135006516 + 42046105 42046242 L1PA5 6144 + 6001 6138 153506 137 chain 146537 chr11 135006516 + 42077742 42079410 L1PA5 6144 + 4456 6131 25085 245 1 0 593 1 0 690 0 10 4 1 0 133 chain 38927 chr11 135006516 + 42085901 42086443 MER41C 542 + 4 542 70834 45 0 1 37 0 2 200 29 24 22 6 4 203 chain 10045 chr11 135006516 + 42142538 42142648 LTR7Y 441 + 331 441 160347 110 chain 246258 chr11 135006516 + 42142648 42145675 HERVH-int 3825 + 0 3120 16431 484 0 56 23 9 8 9 1 0 24 29 0 14 1 0 12 8 46 22 2 1 56 3 1 7 0 2 14 0 3 356 0 1 492 0 1 53 4 31 1404 chain 34936 chr11 135006516 + 42146430 42146852 LTR7Y 441 + 0 393 76283 197 31 0 142 0 2 52 chain 3803 chr11 135006516 + 42173578 42173730 L1MD2 1676 - 197 339 210341 26 93 83 33 chain 111083 chr11 135006516 + 42178060 42179276 L1PA3long 6157 + 4943 6156 33912 463 3 0 750 chain 493018 chr11 135006516 + 42226631 42232834 L1PA7 6471 + 14 6456 7224 166 0 1 4 1 0 43 24 35 136 0 1 3 0 1 87 0 4 24 4 5 96 6 5 31 1 2 306 0 3 29 22 21 56 0 19 1065 3 7 13 0 1 315 0 1 138 16 0 36 1 2 93 0 1 239 24 0 80 1 2 121 18 14 278 5 6 180 0 1 246 0 1 319 8 9 430 0 1 213 2 227 483 0 4 82 12 14 595 1 0 147 chain 72412 chr11 135006516 + 42237619 42238400 L1PA2 6032 + 5249 6031 47298 46 0 1 735 chain 55490 chr11 135006516 + 42242038 42244695 L1MA3 4352 + 2488 4315 55420 23 5 0 145 3 19 33 0 6 143 4 3 122 23 22 111 1663 842 137 121 101 62 3 1 24 1 0 6 1 0 27 chain 44415 chr11 135006516 + 42243510 42244032 L1PA7 6471 + 5771 6294 63678 384 0 1 138 chain 11740 chr11 135006516 + 42244065 42244202 L1PA7 6471 + 6327 6464 153300 137 chain 4018 chr11 135006516 + 42249905 42249951 MER20 218 - 63 109 207101 46 chain 36206 chr11 135006516 + 42289374 42289835 LTR2 463 - 0 460 74619 24 2 1 27 1 0 264 0 1 143 chain 27353 chr11 135006516 + 42302305 42302680 MLT2A1 477 - 93 477 95104 59 2 1 150 1 5 26 0 1 51 7 8 64 0 4 15 chain 102696 chr11 135006516 + 42312184 42313361 L1PA5 6144 - 0 1178 36077 339 1 0 494 0 3 14 1 0 328 chain 95416 chr11 135006516 + 42313361 42314743 L1PA11 4918 + 3134 4508 37943 98 0 4 131 15 2 58 1 0 62 5 18 33 6 7 110 27 6 118 0 5 71 14 24 48 0 4 192 1 2 201 5 0 67 16 13 58 31 28 14 chain 24853 chr11 135006516 + 42331646 42331940 AluSc 308 - 14 308 105607 294 chain 14693 chr11 135006516 + 42365266 42365563 LTR12C 1709 - 725 1058 142287 27 41 0 120 1 0 19 55 133 34 chain 5532 chr11 135006516 + 42376427 42376550 MLT2C1 407 + 115 232 189739 28 39 34 37 1 0 18 chain 27789 chr11 135006516 + 42389960 42390297 THE1B-int 1605 + 1257 1595 93739 331 0 1 6 chain 65804 chr11 135006516 + 42396857 42397615 L1PA5 6144 - 2 772 50193 7 2 0 557 0 14 192 chain 525505 chr11 135006516 + 42398376 42404495 L1PA5 6144 + 0 6129 4625 797 0 1 610 1 6 435 1 0 371 6 7 86 6 4 404 0 1 314 0 1 1280 12 10 330 0 1 341 0 4 904 0 1 221 chain 187111 chr11 135006516 + 42407519 42409802 HERVL-int 5654 + 3316 5640 20327 22 4 1 69 5 6 195 7 17 309 9 11 69 7 10 27 1 2 335 11 16 352 0 6 136 1 4 193 0 10 271 0 2 51 0 1 209 chain 51509 chr11 135006516 + 42420180 42420951 MER4E1 777 - 7 772 57961 14 0 2 163 4 6 14 30 36 25 1 0 121 0 1 20 0 2 49 8 17 37 0 1 14 0 1 4 1 0 167 30 1 54 1 2 14 chain 43258 chr11 135006516 + 42422388 42422932 MLT2A2 560 + 0 560 65107 204 0 5 192 3 14 145 chain 2839 chr11 135006516 + 42442552 42442586 L1ME1 1623 + 1240 1274 228084 34 chain 39475 chr11 135006516 + 42444786 42445263 L1PA6 6164 + 5685 6162 70050 141 0 1 189 1 0 146 chain 544938 chr11 135006516 + 42450833 42456836 L1PA2 6032 - 10 6032 2079 7 0 6 1526 0 8 1893 0 1 1703 0 1 573 0 3 45 1 0 181 1 2 73 chain 29062 chr11 135006516 + 42464106 42464409 AluYb9 318 - 15 318 88714 303 chain 24194 chr11 135006516 + 42466707 42467003 AluSc 308 - 10 306 109252 296 chain 72706 chr11 135006516 + 42478253 42479059 L1PA3long 6157 - 2744 3552 47076 306 0 2 500 chain 247752 chr11 135006516 + 42479059 42481805 L1PA3long 6157 + 3411 6157 16367 971 0 1 1292 1 0 482 chain 23720 chr11 135006516 + 42504957 42505248 L1PA7 6471 - 1698 1993 111934 99 1 5 191 chain 138214 chr11 135006516 + 42505248 42506928 L1PA7 6471 + 4780 6467 26451 175 1 0 26 1 0 4 0 1 724 3 1 431 2 3 99 5 13 56 0 1 153 chain 27201 chr11 135006516 + 42508977 42509332 THE1A 353 + 0 353 95594 109 2 1 92 1 0 151 chain 28293 chr11 135006516 + 42517910 42518231 L1PA5 6144 + 5291 5605 91970 7 7 0 307 chain 46396 chr11 135006516 + 42518232 42518768 L1PA5 6144 + 5605 6141 61691 536 chain 18481 chr11 135006516 + 42524215 42524595 THE1D 372 - 1 372 131553 27 11 12 109 60 57 93 46 37 18 0 2 16 chain 9689 chr11 135006516 + 42524602 42524724 THE1D-int 1627 - 8 133 162157 26 0 3 96 chain 542879 chr11 135006516 + 42536197 42542347 L1PA4 6152 + 1 6151 2363 1708 2 1 376 0 1 1429 2 0 664 0 2 170 0 4 948 0 4 67 1 2 187 8 0 334 1 0 253 chain 36640 chr11 135006516 + 42587728 42588218 L1PA10 4194 - 33 519 74043 11 1 0 24 0 1 4 8 5 9 2 1 431 chain 42004 chr11 135006516 + 42594478 42594936 L1PA3long 6157 - 1 459 66617 458 chain 112132 chr11 135006516 + 42621042 42622304 L1PA5 6144 - 3 1266 33629 216 0 1 1046 chain 20221 chr11 135006516 + 42656435 42656726 THE1A 353 + 0 351 126466 102 8 71 43 3 0 19 1 0 5 1 2 109 chain 115489 chr11 135006516 + 42656728 42658294 THE1A-int 1579 + 0 1567 32611 152 0 10 80 1 2 25 0 3 404 11 12 27 0 2 42 1 0 6 1 2 163 1 0 6 21 3 16 17 18 242 4 5 73 9 10 264 chain 18188 chr11 135006516 + 42658306 42658543 THE1A 353 + 0 233 132365 111 1 0 106 3 0 16 chain 28561 chr11 135006516 + 42676429 42676814 L1PA10 4194 - 44 424 90918 34 3 0 3 1 0 8 1 2 21 3 0 193 0 1 118 chain 26897 chr11 135006516 + 42700893 42701192 L1PA2 6032 - 1394 1693 96011 299 chain 127497 chr11 135006516 + 42701192 42702584 L1PA2 6032 + 4643 6032 28691 1183 1 0 201 2 0 5 chain 529865 chr11 135006516 + 42709577 42715708 L1PA4 6152 + 8 6143 4205 1470 0 1 905 0 4 778 9 3 83 0 12 425 2 0 1891 6 6 82 12 14 315 7 0 146 chain 27671 chr11 135006516 + 42758934 42759307 L1PA7 6471 - 364 768 94144 107 6 8 9 0 23 55 0 1 60 3 2 4 0 1 34 0 5 95 chain 18583 chr11 135006516 + 42759359 42759615 L1PREC2 3366 - 584 840 131279 30 9 5 168 1 5 48 chain 23727 chr11 135006516 + 42759628 42759952 L1PA7 6471 + 6150 6469 111899 130 3 1 16 0 1 4 1 0 5 14 14 140 3 0 8 chain 11431 chr11 135006516 + 42787000 42787339 THE1B 368 - 20 368 154561 24 24 20 53 13 12 7 1 0 14 17 24 13 16 15 49 14 15 11 48 56 35 chain 175424 chr11 135006516 + 42812131 42814073 L1PA4 6152 + 4209 6151 21403 1942 chain 27504 chr11 135006516 + 42814598 42814970 THE1C 375 + 5 375 94640 113 0 1 6 3 0 118 5 6 25 0 1 4 1 0 70 1 0 26 chain 157668 chr11 135006516 + 42818483 42820227 L1PA3long 6157 + 4415 6157 23638 625 1 0 343 1 0 774 chain 3569 chr11 135006516 + 42873439 42873486 L1MEc 1507 + 1005 1051 214143 21 1 0 25 chain 134716 chr11 135006516 + 42895286 42896945 LTR12C 1709 + 0 1709 27074 177 0 1 117 9 10 113 10 15 379 0 40 60 0 2 198 1 0 4 4 2 20 2 1 85 0 4 73 5 6 402 chain 414670 chr11 135006516 + 42897018 42901923 HERV9-int 5642 + 0 4824 9678 791 1 0 125 8 4 153 80 0 36 5 1 155 0 1 78 0 1 236 0 1 510 0 3 1254 0 1 1465 0 1 8 chain 128797 chr11 135006516 + 42902750 42904470 LTR12C 1709 + 0 1709 28364 277 4 0 6 5 0 8 6 16 454 117 0 76 1 0 273 1 0 6 4 2 20 2 1 85 0 4 109 1 5 74 0 102 191 chain 3546 chr11 135006516 + 42903519 42903561 LTR12C 1709 + 651 693 166313 42 chain 4650 chr11 135006516 + 42903561 42903627 LTR12C 1709 + 852 920 110199 63 0 2 3 chain 165793 chr11 135006516 + 42917781 42920514 L1PA4 6152 - 23 1925 22539 90 0 1 308 1 2 617 834 0 439 7 8 437 chain 47149 chr11 135006516 + 42918826 42919333 L1PA2 6032 - 2 509 61089 507 chain 26487 chr11 135006516 + 42919333 42919631 L1PA2 6032 + 5214 5515 97436 41 1 0 171 0 4 85 chain 29262 chr11 135006516 + 42920514 42920838 L1PA4 6152 + 3895 4219 86505 324 chain 25761 chr11 135006516 + 42921134 42921510 THE1C 375 + 0 375 101038 125 3 0 58 2 3 9 14 10 74 5 10 86 chain 43910 chr11 135006516 + 42927946 42928487 MER41A 554 - 0 541 64323 541 chain 202277 chr11 135006516 + 42936572 42938996 L1PA7 6471 - 4 3157 19042 816 0 727 824 0 1 6 2 1 90 2 0 443 6 10 235 chain 86922 chr11 135006516 + 42938996 42940073 L1PA7 6471 + 2194 3275 40743 507 1 0 188 8 12 195 0 4 36 4 1 138 chain 26557 chr11 135006516 + 42940905 42941246 THE1A 353 - 0 353 97816 64 8 20 159 1 0 27 0 1 82 chain 25163 chr11 135006516 + 42943132 42943508 THE1D 372 - 0 372 103947 33 4 5 139 23 30 123 13 1 41 chain 69170 chr11 135006516 + 42944394 42945481 L1PA14 3548 - 95 1164 48731 39 1 0 8 9 8 5 1 0 9 9 7 22 26 23 39 5 4 41 34 41 70 1 0 6 2 0 13 8 4 107 10 6 41 15 13 12 2 0 247 1 0 151 1 0 126 0 1 26 chain 11846 chr11 135006516 + 42961642 42961801 L1PA8 5853 + 5696 5853 152846 44 2 1 19 1 0 93 chain 536469 chr11 135006516 + 42961888 42967888 L1PA3long 6157 + 4 6156 3380 147 0 1 212 0 1 221 0 3 187 0 128 142 1 0 62 0 3 906 0 1 1310 0 18 2662 1 0 144 1 0 4 chain 120980 chr11 135006516 + 42971243 42972706 LTR12C 1709 + 0 1709 30701 286 9 0 433 0 118 275 2 0 5 3 1 106 0 4 228 2 8 12 0 131 102 chain 210752 chr11 135006516 + 42973512 42975820 L1PA3long 6157 + 3591 5903 18454 96 0 1 49 0 1 616 0 4 118 2 0 1427 chain 21802 chr11 135006516 + 42975820 42976074 L1PA3long 6157 + 5904 6157 121012 236 1 0 17 chain 2944 chr11 135006516 + 42998927 42998963 MER5A 189 + 30 66 226237 36 chain 75344 chr11 135006516 + 43003039 43003991 L1PA8 5853 + 4897 5845 45849 113 2 0 74 0 2 154 0 3 321 6 5 40 2 0 70 12 10 51 2 1 19 1 0 85 chain 28340 chr11 135006516 + 43011343 43011662 L1PA3long 6157 + 5822 6141 91799 319 chain 8816 chr11 135006516 + 43016684 43016785 L1PA4 6152 + 5252 5353 166575 101 chain 69948 chr11 135006516 + 43016785 43017576 L1PA4 6152 + 5354 6143 48410 624 3 1 164 chain 29672 chr11 135006516 + 43019292 43019690 MLT2A1 477 - 84 473 85952 8 8 0 173 7 8 24 0 1 10 4 1 164 chain 543534 chr11 135006516 + 43020920 43027061 L1PA4 6152 - 9 6145 2262 164 3 1 1122 0 1 2067 4 0 1232 0 1 1502 1 0 46 chain 16795 chr11 135006516 + 43028236 43028422 L1PA3long 6157 - 0 186 136126 186 chain 100664 chr11 135006516 + 43062099 43063389 THE1A-int 1579 - 286 1579 36593 378 0 2 209 4 0 205 0 2 13 1 0 374 0 3 80 5 6 21 chain 25900 chr11 135006516 + 43063389 43063741 THE1A 353 - 0 353 100436 114 5 6 123 1 0 25 3 4 81 chain 546601 chr11 135006516 + 43116561 43122699 L1PA3long 6157 - 0 6157 1868 137 0 1 5 3 0 714 1 0 123 1 2 981 0 9 1261 0 1 1462 8 15 687 0 4 755 chain 21071 chr11 135006516 + 43124418 43124679 AluY 311 + 40 301 123652 83 1 0 9 1 2 167 chain 21891 chr11 135006516 + 43128794 43129185 L1PA15 4387 - 60 450 120661 12 3 1 44 6 3 49 19 14 19 2 1 54 10 12 14 1 0 40 13 23 45 1 0 59 chain 25433 chr11 135006516 + 43139243 43139602 THE1C 375 - 12 375 102533 14 1 0 33 15 1 236 1 20 59 chain 21047 chr11 135006516 + 43158738 43158978 L1PA4 6152 - 0 245 123742 6 0 5 234 chain 18733 chr11 135006516 + 43168382 43168597 L1PA7 6471 - 4 219 130870 215 chain 74700 chr11 135006516 + 43183291 43184162 MER11D 897 - 3 897 46159 284 1 24 586 chain 39777 chr11 135006516 + 43184162 43184623 HERVK11D-int 613 - 0 460 69658 324 2 1 135 chain 73585 chr11 135006516 + 43189304 43190177 MER11D 897 - 0 897 46743 113 0 1 173 1 24 586 chain 34386 chr11 135006516 + 43200654 43201100 MLT2A1 477 - 0 477 77087 43 3 40 199 3 0 25 4 1 169 chain 112141 chr11 135006516 + 43214903 43216175 L1PA6 6164 + 4877 6151 33626 305 2 3 129 0 1 836 chain 531537 chr11 135006516 + 43222786 43228930 L1PA4 6152 - 9 6152 4016 103 1 0 4195 0 1 593 21 20 786 2 1 124 23 24 296 chain 409357 chr11 135006516 + 43228930 43234453 L1PA8A 6298 - 625 6268 9816 397 0 1 290 5 9 151 1 0 129 5 6 817 1 0 13 8 11 282 0 1 123 0 4 200 0 1 269 0 4 390 0 4 158 11 12 97 1 2 735 32 154 5 0 1 149 12 13 110 0 1 184 0 3 221 56 76 108 2 0 102 9 7 11 60 1 11 0 56 22 9 3 20 4 3 41 1 0 8 10 6 8 1 0 7 1 0 7 1 0 8 1 0 13 1 0 4 2 0 17 2 0 10 1 0 7 1 0 12 13 11 18 19 10 18 2 0 17 34 26 28 chain 27122 chr11 135006516 + 43237095 43237463 THE1C 375 + 7 375 95862 8 2 0 127 0 4 101 12 11 92 1 0 25 chain 13930 chr11 135006516 + 43250733 43251076 L1PA15 4387 - 21 354 144823 10 1 0 28 18 12 46 63 63 22 9 8 33 30 29 11 1 0 71 chain 21345 chr11 135006516 + 43252147 43252411 AluY 311 + 3 296 122705 129 0 1 9 4 1 8 0 31 114 chain 20221 chr11 135006516 + 43273403 43273692 AluSc8 310 + 20 309 126469 25 0 1 73 1 0 4 9 8 107 7 8 63 chain 158514 chr11 135006516 + 43276067 43277925 L1PA6 6164 + 4273 6162 23529 36 0 1 435 0 12 558 2 0 516 0 1 171 1 14 5 1 0 54 1 8 78 chain 12384 chr11 135006516 + 43280332 43280486 L1PA8A 6298 + 6136 6291 150696 43 1 2 110 chain 26268 chr11 135006516 + 43294024 43294400 THE1C 375 + 0 375 98942 103 1 2 70 25 23 78 1 2 72 1 0 25 chain 81155 chr11 135006516 + 43295790 43296830 MER11C 1089 - 35 1089 43109 190 0 1 125 0 1 38 1 0 4 1 5 95 6 4 36 24 23 146 1 0 65 0 4 62 0 9 246 chain 2822 chr11 135006516 + 43306367 43306429 LTR16A 446 + 284 347 228429 14 19 20 29 chain 6426 chr11 135006516 + 43352810 43352898 HY4 93 + 0 84 181815 71 4 0 13 chain 556874 chr11 135006516 + 43367651 43373668 L1PA2 6032 - 0 6032 621 54 0 4 199 6 18 5265 1 0 492 chain 23678 chr11 135006516 + 43378748 43379030 AluSg7 307 - 25 307 112166 150 0 1 67 1 0 64 chain 24561 chr11 135006516 + 43395719 43396125 L1P4 1494 + 1034 1446 107187 237 4 5 71 24 30 13 13 11 9 2 0 3 1 0 8 1 5 20 chain 2911 chr11 135006516 + 43434213 43434244 Tigger4a 237 - 189 220 226861 31 chain 58068 chr11 135006516 + 43452332 43453032 L1PA7 6471 - 3 709 53942 7 8 0 142 1 2 11 0 10 16 0 1 66 0 2 449 chain 29230 chr11 135006516 + 43482652 43482966 AluYb8 318 + 0 314 87908 314 chain 76843 chr11 135006516 + 43498049 43498945 THE1A-int 1579 - 683 1579 45062 896 chain 26622 chr11 135006516 + 43498945 43499293 THE1A 353 - 0 353 97588 40 12 13 4 0 1 93 1 0 92 1 0 77 0 5 28 chain 29585 chr11 135006516 + 43506340 43506767 MER1A 529 + 19 529 86253 71 1 10 51 3 67 21 8 4 133 0 10 70 19 23 50 chain 31204 chr11 135006516 + 43527063 43527489 MER57A1 433 - 0 433 82156 149 22 24 32 0 5 223 chain 23060 chr11 135006516 + 43542615 43542967 THE1C 375 - 0 375 115357 25 19 27 154 1 0 30 8 11 11 1 0 35 1 15 67 chain 12770 chr11 135006516 + 43546976 43547132 Tigger1 2417 - 1238 1394 149178 156 chain 16738 chr11 135006516 + 43550714 43550899 L1PA3long 6157 + 5971 6157 136290 38 0 1 147 chain 38821 chr11 135006516 + 43557734 43558291 L1MA3 4352 - 1468 2027 70988 205 0 1 87 4 2 76 5 0 40 10 14 89 14 18 27 chain 14191 chr11 135006516 + 43565662 43565826 L1PA3long 6157 + 5993 6157 143917 164 chain 545458 chr11 135006516 + 43674952 43681091 L1PA4 6152 - 0 6152 2019 155 0 1 347 0 6 997 10 1 763 0 1 567 6 11 1682 0 6 314 0 4 180 2 1 1116 chain 5253 chr11 135006516 + 43681136 43681256 L1ME1 1623 + 810 925 192483 8 1 0 40 18 15 16 14 13 23 chain 19211 chr11 135006516 + 43689096 43689407 Tigger4b 360 - 8 360 129499 37 4 20 95 0 1 60 16 39 17 21 22 61 chain 160998 chr11 135006516 + 43699005 43700834 L1PA5 6144 - 12 1849 23196 134 1 0 7 1 0 100 0 1 169 1 11 688 1 0 727 chain 17681 chr11 135006516 + 43700834 43701028 L1PA5 6144 + 4069 4263 133742 194 chain 60042 chr11 135006516 + 43717838 43718721 L1PA8 5853 + 4957 5844 52801 49 2 8 43 0 2 34 6 7 222 0 4 188 0 1 49 2 1 43 2 0 50 51 0 10 0 46 25 4 3 20 1 0 82 chain 109114 chr11 135006516 + 43722712 43724705 L1MA1 4479 - 296 1993 34415 11 7 0 13 21 17 35 2 0 29 1 0 17 0 3 106 3 0 6 1 0 87 1 0 14 2 0 9 2 1 9 18 17 41 2 9 4 1 0 16 2 0 23 2 1 197 2 0 125 7 4 126 4 0 12 1 0 56 0 1 19 4 0 13 29 21 140 18 16 27 1 0 23 14 35 34 1 0 57 24 11 27 2 0 83 235 0 20 5 4 62 2 0 8 31 9 99 chain 27610 chr11 135006516 + 43724750 43725043 AluYa5 310 - 17 310 94322 293 chain 23885 chr11 135006516 + 43733697 43733981 AluSc5 308 + 1 285 110994 284 chain 9396 chr11 135006516 + 43734000 43734264 MER4B 649 + 294 576 163575 33 16 29 67 35 30 30 65 75 18 chain 231984 chr11 135006516 + 43734685 43737294 L1PA5 6144 - 4 2620 17198 143 0 1 361 0 2 335 14 18 1756 chain 23406 chr11 135006516 + 43753534 43753908 THE1C 375 + 2 375 113619 21 11 7 29 14 13 35 1 2 26 0 4 39 20 19 153 1 0 20 0 1 4 chain 5916 chr11 135006516 + 43753908 43753988 MER72 723 - 406 486 186036 11 0 3 26 3 0 40 chain 42488 chr11 135006516 + 43768972 43769524 LTR14 556 + 0 556 66028 4 0 1 5 1 0 436 8 0 9 3 10 20 0 5 66 chain 30376 chr11 135006516 + 43778901 43779217 AluYb8 318 + 0 316 83721 316 chain 196616 chr11 135006516 + 43797165 43799335 L1PA3long 6157 - 5 2180 19454 391 0 3 225 0 1 1550 0 1 4 chain 94142 chr11 135006516 + 43799335 43800364 L1PA3long 6157 + 2945 3973 38205 232 1 0 796 chain 25145 chr11 135006516 + 43804964 43805305 L1PA7 6471 - 2 334 104031 10 2 0 132 21 20 44 6 0 126 chain 23502 chr11 135006516 + 43805541 43805846 LTR2C 499 - 0 306 113124 58 1 3 91 1 0 154 chain 93203 chr11 135006516 + 43838192 43839589 L1PB1 5432 - 12 1649 38599 16 1 0 13 1 0 21 1 0 23 3 1 10 12 9 18 23 13 15 1 0 44 1 0 67 3 1 10 7 3 10 1 0 8 1 0 24 86 356 131 3 0 116 0 1 36 13 10 295 1 5 73 0 1 79 4 2 226 chain 53432 chr11 135006516 + 43843888 43844504 L1PA5 6144 - 4 621 56738 334 0 1 282 chain 19260 chr11 135006516 + 43844825 43845096 AluJr4 308 - 9 284 129348 165 5 0 8 12 21 81 chain 28323 chr11 135006516 + 43849688 43849990 AluYa5 310 - 7 310 91857 249 0 1 53 chain 3005 chr11 135006516 + 43880278 43880410 L1MC4 1079 + 690 860 224942 33 83 121 16 chain 30427 chr11 135006516 + 43891844 43892162 AluYb8 318 + 0 318 83597 318 chain 9159 chr11 135006516 + 43912435 43912545 MER2 342 - 93 203 164768 110 chain 33143 chr11 135006516 + 43917780 43918243 MLT2A1 477 - 8 477 78998 38 33 37 9 4 0 20 7 8 184 1 5 25 0 1 142 chain 31958 chr11 135006516 + 43971415 43971918 MER4A 717 + 134 702 80923 21 8 17 40 46 61 96 1 41 47 1 2 37 1 0 10 15 16 180 chain 35991 chr11 135006516 + 43973900 43974353 LTR2 463 + 0 463 74909 55 0 3 71 0 3 219 7 11 101 chain 10262 chr11 135006516 + 43974611 43974733 MER41B 635 + 0 124 159315 117 0 2 5 chain 57287 chr11 135006516 + 43978614 43979468 MER4D0 881 - 0 839 54345 49 1 0 142 63 46 80 1 0 8 14 17 8 0 3 150 0 1 26 0 1 138 0 2 22 0 2 47 0 1 29 9 0 67 chain 6936 chr11 135006516 + 44021459 44021539 MER2 342 + 135 215 177919 80 chain 135104 chr11 135006516 + 44042190 44044352 L1PB1 5432 - 2 2420 26994 4 1 0 4 1 0 4 1 0 14 5 4 7 1 0 23 1 0 24 2 0 13 11 9 11 9 0 10 2 1 8 2 0 14 1 0 44 6 5 10 2 1 39 31 25 12 1 0 6 1 0 24 17 11 56 3 4 68 0 12 254 1 4 79 4 0 48 1 0 4 4 5 40 0 1 341 12 13 147 0 1 302 0 3 8 0 1 229 1 0 4 0 1 21 149 425 20 chain 23020 chr11 135006516 + 44055955 44056320 THE1B 368 - 2 368 115528 37 24 23 66 8 16 10 0 1 4 15 9 31 1 0 169 chain 14148 chr11 135006516 + 44060859 44061175 L1PB1 5432 + 5120 5404 144047 18 2 0 9 1 0 7 19 13 53 2 1 15 1 0 41 10 9 10 1 0 4 24 12 12 10 7 15 2 0 24 1 0 21 1 0 13 chain 12535 chr11 135006516 + 44176870 44177136 L1MA3 4352 - 4107 4351 150098 12 1 0 53 1 0 16 4 0 8 1 0 58 3 0 13 21 16 25 36 29 14 chain 28853 chr11 135006516 + 44186426 44186727 AluYa5 310 - 9 310 89660 301 chain 25282 chr11 135006516 + 44189366 44189674 L1PA3long 6157 - 0 301 103308 155 7 0 146 chain 5754 chr11 135006516 + 44224758 44224861 LTR41 747 - 22 141 187604 61 1 0 7 16 33 18 chain 29437 chr11 135006516 + 44237415 44237725 AluYb8 318 - 8 318 86914 310 chain 5858 chr11 135006516 + 44393206 44393276 MER53 195 + 0 70 186604 70 chain 4209 chr11 135006516 + 44402547 44402595 MIRb 242 + 67 115 204425 48 chain 513869 chr11 135006516 + 44412424 44418841 L1PA5 6144 - 12 6142 5792 838 1 0 34 0 7 1578 1 0 701 45 2 658 3 1 225 0 1 151 0 1 90 308 0 674 9 0 129 0 1 87 3 0 115 17 0 7 2 19 379 8 7 48 57 114 130 13 27 106 chain 23462 chr11 135006516 + 44422585 44422891 AluSp 311 - 20 311 113306 149 24 9 133 chain 27702 chr11 135006516 + 44436409 44436796 MLT2A1 477 + 0 383 94037 141 1 2 18 9 13 36 0 1 159 10 0 13 chain 115156 chr11 135006516 + 44437074 44438467 HERVL-int 5654 + 0 1379 32732 104 0 2 348 19 2 27 0 1 895 chain 470950 chr11 135006516 + 44459443 44464994 L1PA7 6471 + 873 6464 8003 97 0 1 426 0 4 392 0 1 115 0 1 255 1 6 330 0 2 510 0 8 72 0 7 18 0 1 540 3 0 360 0 1 32 1 0 126 0 7 132 0 1 137 0 6 783 4 5 165 0 1 206 8 7 831 2 0 5 chain 3177 chr11 135006516 + 44466619 44466661 MIRb 242 - 100 143 221387 38 0 1 4 chain 67261 chr11 135006516 + 44498555 44499348 THE1A-int 1579 + 776 1569 49539 793 chain 29307 chr11 135006516 + 44508248 44508617 MER48 407 + 15 407 87530 15 0 1 4 1 0 203 0 1 57 1 23 88 chain 2884 chr11 135006516 + 44522419 44522453 MLT1C 463 + 57 91 227282 34 chain 25877 chr11 135006516 + 44543396 44543694 AluSx4 309 + 1 299 100540 298 chain 25850 chr11 135006516 + 44565642 44566028 MLT2A1 477 + 0 407 100657 37 11 13 89 1 2 28 1 5 79 0 28 45 0 1 58 3 0 8 12 0 14 chain 470124 chr11 135006516 + 44566139 44571805 HERVL-int 5654 + 0 5654 8029 304 0 8 142 3 2 191 3 2 29 1 0 4 0 1 224 4 3 7 0 5 165 1 0 115 0 1 554 12 0 1272 0 1 1163 4 0 111 1 0 284 0 8 7 9 1 197 1 0 188 4 3 233 8 5 204 0 1 32 3 0 26 0 1 160 chain 3167 chr11 135006516 + 44594290 44594326 MIRb 242 + 100 136 221601 36 chain 25231 chr11 135006516 + 44638836 44639132 AluSz 310 + 10 306 103581 296 chain 3057 chr11 135006516 + 44663831 44663874 L1MB8 1703 - 24 64 223856 17 3 0 23 chain 7046 chr11 135006516 + 44669310 44669458 L1PA11 4918 - 401 501 177149 9 4 0 20 1 0 14 2 0 26 41 0 31 chain 148066 chr11 135006516 + 44684519 44686193 SVA_F 1814 + 10 1814 24870 650 54 4 65 0 169 49 0 15 39 1 0 10 1 0 159 1 0 17 1 0 627 chain 4941 chr11 135006516 + 44685169 44685223 SVA_F 1814 + 970 1024 83712 54 chain 23540 chr11 135006516 + 44700566 44701020 L1PB2 3958 - 120 526 112902 15 18 24 16 51 12 11 11 9 26 1 0 43 5 4 61 1 0 72 1 0 94 7 0 13 2 0 6 chain 20811 chr11 135006516 + 44774720 44774973 AluSc5 308 - 52 300 124567 104 7 4 130 2 0 10 chain 3398 chr11 135006516 + 44784466 44784503 tRNA-Val-GTG 73 - 36 73 217115 37 chain 4004 chr11 135006516 + 44796807 44796857 MER53 195 - 121 171 207329 50 chain 73098 chr11 135006516 + 44864768 44865776 MER11C 1089 - 68 1089 46979 101 1 0 54 0 1 127 0 1 38 1 0 4 1 5 85 43 42 54 3 1 122 1 0 63 13 17 51 0 9 246 chain 4066 chr11 135006516 + 44894283 44894329 MIR 256 - 137 183 206387 46 chain 13075 chr11 135006516 + 44946302 44946442 L1PA5 6144 + 5992 6132 147933 140 chain 25130 chr11 135006516 + 45022749 45023138 THE1D 372 + 0 368 104129 156 44 35 11 16 6 47 1 0 85 1 0 28 chain 151267 chr11 135006516 + 45030853 45032527 L1PA4 6152 - 3 1683 24436 854 0 6 820 chain 10684 chr11 135006516 + 45033223 45033351 L1PA8 5853 - 256 383 157478 33 1 0 94 chain 507565 chr11 135006516 + 45033366 45039496 L1PA6 6164 - 4 6164 6359 6 2 0 832 0 4 333 0 1 556 0 1 400 0 2 158 0 2 646 1 2 27 0 1 591 0 2 109 1 0 35 0 4 47 6 10 65 0 1 552 0 1 4 1 0 152 4 0 170 7 11 7 5 0 180 7 1 49 0 2 183 6 8 201 0 17 52 0 5 159 6 8 39 13 15 54 15 5 32 1 0 4 17 19 395 chain 7351 chr11 135006516 + 45039507 45039591 L1PA8 5853 - 379 463 175084 84 chain 17334 chr11 135006516 + 45039592 45039842 L1PA8 5853 + 5608 5853 134698 5 1 0 63 4 3 9 8 7 45 2 1 19 2 1 92 chain 3253 chr11 135006516 + 45065475 45065523 MIRb 242 + 68 117 219934 12 2 3 34 chain 20630 chr11 135006516 + 45103066 45103421 THE1B 368 - 0 368 125190 56 7 6 66 8 16 10 0 4 10 1 0 5 18 11 6 0 2 41 25 33 102 chain 119927 chr11 135006516 + 45133868 45135651 L1PB2 3958 - 120 1816 31081 8 0 1 54 21 21 73 1 0 64 1 0 77 1 0 88 4 0 14 2 0 63 41 23 44 2 0 119 0 1 7 2 1 256 5 4 162 10 12 8 1 0 5 1 4 236 19 12 37 5 6 40 66 5 232 0 5 14 chain 6287 chr11 135006516 + 45138204 45138287 MLT1B 390 + 305 388 182909 83 chain 2944 chr11 135006516 + 45138875 45138908 L1MC3 1789 + 1334 1367 226235 33 chain 24977 chr11 135006516 + 45140896 45141197 AluYf5 307 + 0 307 104925 118 3 0 111 1 10 68 chain 547206 chr11 135006516 + 45143866 45150048 L1PA4 6152 - 0 6151 1806 65 26 0 195 1 0 345 1 0 518 1 0 764 0 3 299 0 4 1571 0 4 1140 0 1 410 24 7 250 0 3 572 chain 20944 chr11 135006516 + 45155988 45156276 AluJb 308 + 20 307 124136 32 18 19 212 2 0 24 chain 10496 chr11 135006516 + 45191103 45191232 MER85 139 - 0 139 158266 40 0 10 89 chain 22390 chr11 135006516 + 45210492 45210751 AluSp 311 - 52 311 118533 259 chain 16683 chr11 135006516 + 45213397 45213615 L1PA8 5853 - 2 215 136456 91 1 0 18 1 0 55 2 0 7 1 0 42 chain 29339 chr11 135006516 + 45216143 45216448 AluYa5 310 - 5 310 87353 305 chain 4698 chr11 135006516 + 45217502 45217611 L1MB8 1703 - 358 479 198554 48 36 35 17 0 13 8 chain 29351 chr11 135006516 + 45219243 45219573 L1PA5 6144 + 5805 6135 87283 330 chain 73767 chr11 135006516 + 45270561 45271450 L1PA6 6164 + 5264 6156 46638 51 1 0 176 0 2 243 0 2 97 1 0 168 1 2 151 chain 14825 chr11 135006516 + 45282610 45282854 L1MB3 1562 + 776 1027 141858 88 14 15 33 8 13 77 8 9 16 chain 36510 chr11 135006516 + 45293429 45293893 L1PA7 6471 + 5994 6458 74226 146 1 0 168 1 2 49 3 0 5 0 3 91 chain 41321 chr11 135006516 + 45297630 45298132 L1PA7 6471 + 5956 6464 67507 106 7 8 380 0 5 9 chain 3229 chr11 135006516 + 45323993 45324027 MER51A 677 - 442 476 220445 34 chain 3326 chr11 135006516 + 45324072 45324112 MER51A 677 - 441 481 218471 40 chain 66685 chr11 135006516 + 45331094 45331857 L1PA5 6144 - 16 778 49794 571 1 0 191 chain 24185 chr11 135006516 + 45400394 45400688 AluSp 311 - 18 311 109297 159 1 0 134 chain 29383 chr11 135006516 + 45438791 45439104 AluYb8 318 + 0 313 87155 313 chain 25320 chr11 135006516 + 45440237 45440587 THE1B 368 + 0 368 103119 44 0 15 71 0 1 37 1 0 36 1 5 78 7 6 75 chain 13066 chr11 135006516 + 45448171 45448400 MER30 238 - 0 238 147970 49 3 0 62 51 63 64 chain 7405 chr11 135006516 + 45543944 45544036 MSTD 398 + 0 92 174740 92 chain 25799 chr11 135006516 + 45555109 45555404 L1PA2 6032 + 5734 6029 100874 295 chain 2812 chr11 135006516 + 45572141 45572337 MIR 256 - 23 234 228585 16 84 83 27 50 66 19 chain 23976 chr11 135006516 + 45579418 45579761 THE1B 368 - 0 367 110474 125 35 45 30 1 0 109 0 15 43 chain 520293 chr11 135006516 + 45649146 45655282 L1PA6 6164 + 0 6162 5125 5 0 2 484 14 22 1133 0 3 564 0 4 116 0 1 39 1 0 599 0 1 211 5 6 50 0 4 954 0 3 185 0 2 478 1 0 966 1 0 330 chain 38348 chr11 135006516 + 45697743 45698281 MLT2A2 560 + 0 560 71654 87 6 5 14 0 5 72 1 0 10 22 25 181 3 14 77 0 1 57 0 4 8 chain 36762 chr11 135006516 + 45716432 45716949 LTR10D 510 - 0 510 73859 87 5 4 148 6 0 24 13 15 133 3 0 20 0 1 4 2 4 49 3 1 20 chain 9675 chr11 135006516 + 45721683 45721830 MER61A 341 - 0 145 162224 39 13 12 79 1 0 15 chain 21044 chr11 135006516 + 45753846 45754187 MSTA 426 - 64 426 123754 45 3 6 10 1 6 55 1 2 77 1 7 18 1 2 5 1 0 8 19 25 96 chain 136480 chr11 135006516 + 45759073 45760719 SVA_F 1814 - 0 1479 26748 627 1 0 10 1 0 167 1 0 14 1 0 34 175 14 60 2 0 553 chain 12473 chr11 135006516 + 45759929 45760061 SVA_F 1814 - 676 808 137873 132 chain 2308 chr11 135006516 + 45760074 45760101 SVA_F 1814 - 821 848 235333 27 chain 4903 chr11 135006516 + 45777484 45777542 MIR3 191 + 51 109 196245 58 chain 26556 chr11 135006516 + 45782083 45782449 MER75 514 - 61 425 97820 123 14 13 189 7 6 33 chain 68504 chr11 135006516 + 45805136 45806158 L1PA8 5853 + 5011 5853 49037 83 0 1 420 175 0 49 1 0 46 2 0 55 0 1 12 2 1 9 1 0 52 2 1 18 2 1 93 chain 5600 chr11 135006516 + 45811132 45811219 MLT1B 390 + 280 367 189081 20 1 0 21 8 9 37 chain 2884 chr11 135006516 + 45821849 45821880 L1MA4 2864 - 60 91 227274 31 chain 42483 chr11 135006516 + 45844940 45845431 HERV1_LTRc 486 + 0 486 66033 92 3 0 358 2 0 36 chain 275625 chr11 135006516 + 45857428 45860724 L1PA7 6471 + 3157 6469 14892 167 13 22 203 0 4 283 1 0 166 1 0 48 5 1 129 0 2 482 0 4 681 1 0 260 6 5 59 2 1 36 1 0 89 0 4 309 0 1 181 0 1 20 0 1 153 chain 11993 chr11 135006516 + 45861509 45861775 L1MB8 1703 - 41 258 152228 31 3 0 5 6 0 22 61 26 50 10 5 78 chain 30784 chr11 135006516 + 45863547 45863964 MER83 447 - 18 447 82890 13 15 12 217 7 22 165 chain 3933 chr11 135006516 + 45884054 45884108 Tigger4a 237 - 0 191 208374 42 0 137 12 chain 13536 chr11 135006516 + 45911845 45912020 MER30 238 - 0 200 146227 37 0 1 66 3 27 69 chain 29563 chr11 135006516 + 45945256 45945565 AluYa5 310 + 1 310 86369 309 chain 12407 chr11 135006516 + 45971968 45972169 MER30 238 - 0 205 150607 26 7 1 21 3 0 52 2 26 13 11 0 66 chain 24045 chr11 135006516 + 46013811 46014108 AluY 311 + 10 293 110078 116 7 0 136 7 0 31 chain 3235 chr11 135006516 + 46026878 46026937 Tigger4a 237 - 24 84 220340 31 1 0 7 9 11 11 chain 8637 chr11 135006516 + 46034515 46034637 MER44A 345 - 8 130 167560 11 2 3 5 1 0 103 chain 20239 chr11 135006516 + 46082521 46082970 L1PREC2 3366 - 335 743 126417 21 25 23 16 22 8 13 3 0 24 74 62 10 3 0 4 1 0 47 1 0 12 3 0 39 2 0 129 chain 6209 chr11 135006516 + 46084235 46084331 L1ME1 1623 + 1181 1276 183507 27 9 8 60 chain 22679 chr11 135006516 + 46094613 46094894 AluY 311 + 16 298 117167 116 7 8 158 chain 10447 chr11 135006516 + 46112050 46112182 MER103C 291 - 88 220 158508 13 1 0 102 0 1 16 chain 9275 chr11 135006516 + 46112374 46112502 MER85 139 + 0 139 164188 96 3 14 29 chain 3579 chr11 135006516 + 46145393 46145436 MER58B 340 - 2 45 214003 43 chain 3011 chr11 135006516 + 46152011 46152046 MER117 194 - 105 140 224811 35 chain 108119 chr11 135006516 + 46174180 46175669 L1PA16 3655 - 570 2045 34682 100 2 3 50 12 10 19 2 1 205 29 32 545 0 1 105 41 25 83 0 1 110 1 0 185 chain 201881 chr11 135006516 + 46176833 46179052 L1PA3long 6157 - 5 2224 19077 1034 1 0 760 0 4 416 3 0 5 chain 3912 chr11 135006516 + 46185176 46185283 Charlie18a 321 + 213 321 208680 43 47 48 17 chain 25363 chr11 135006516 + 46193273 46193658 THE1C 375 + 0 375 102868 180 0 1 4 46 36 129 8 7 18 chain 19567 chr11 135006516 + 46208473 46208863 THE1D 372 + 0 372 128469 40 73 57 69 52 51 7 1 0 148 chain 4598 chr11 135006516 + 46220207 46220297 MIRb 242 + 67 154 199649 16 14 15 47 4 0 9 chain 6077 chr11 135006516 + 46229610 46229681 Charlie3 2679 + 373 444 184603 71 chain 7056 chr11 135006516 + 46229681 46229798 MER1A 529 + 403 515 177059 53 2 0 5 17 14 40 chain 25967 chr11 135006516 + 46241405 46241697 AluYk4 311 + 0 292 100147 292 chain 10584 chr11 135006516 + 46253420 46253636 L1MC2 1988 + 1707 1918 157897 59 4 3 32 58 54 63 chain 11438 chr11 135006516 + 46253722 46253884 L1PA8 5853 + 5688 5848 154539 47 7 6 19 1 0 88 chain 4178 chr11 135006516 + 46260287 46260340 MIR 256 - 133 186 204841 53 chain 23671 chr11 135006516 + 46263141 46263426 AluSp 311 - 9 301 112194 254 0 7 31 chain 6995 chr11 135006516 + 46265709 46265820 HY3 101 + 0 98 177496 61 17 4 33 chain 15367 chr11 135006516 + 46267793 46268058 L1PB1 5432 - 12 254 140299 16 1 0 13 1 0 19 1 0 24 2 0 16 8 5 30 13 1 16 1 0 43 1 0 16 2 1 42 chain 22332 chr11 135006516 + 46269760 46270039 AluSp 311 - 31 311 118764 66 10 11 203 chain 23663 chr11 135006516 + 46325744 46326036 AluSp 311 + 2 296 112233 9 0 1 185 1 2 97 chain 3253 chr11 135006516 + 46329079 46329118 MIRb 242 - 133 172 219936 39 chain 22322 chr11 135006516 + 46439956 46440209 L1PA5 6144 - 4 257 118815 253 chain 4170 chr11 135006516 + 46449086 46449138 MER5A 189 - 42 94 204972 52 chain 7751 chr11 135006516 + 46468092 46468275 MER20 218 - 0 188 172599 24 59 66 41 9 7 50 chain 21908 chr11 135006516 + 46492848 46493113 AluY 311 + 2 268 120592 130 0 1 135 chain 19052 chr11 135006516 + 46510633 46510848 L1PA4 6152 - 16 230 129961 132 1 0 82 chain 24830 chr11 135006516 + 46541416 46541708 AluSp 311 + 9 300 105723 273 1 0 18 chain 3879 chr11 135006516 + 46589222 46589379 LTR8A 794 + 435 603 209174 16 1 0 5 88 101 17 1 0 29 chain 86335 chr11 135006516 + 46595215 46596148 L1PA2 6032 - 0 934 41028 150 0 1 783 chain 134678 chr11 135006516 + 46604585 46606083 L1PA3long 6157 + 4680 6157 27080 617 0 3 7 25 1 849 chain 27350 chr11 135006516 + 46606606 46606899 SVA_D 2077 + 1768 2061 95114 293 chain 25119 chr11 135006516 + 46613491 46613783 AluSp 311 - 8 310 104177 185 0 10 107 chain 24741 chr11 135006516 + 46636459 46636747 AluSp 311 - 9 297 106218 288 chain 5573 chr11 135006516 + 46664468 46664532 MER101B 537 - 0 64 189348 64 chain 5921 chr11 135006516 + 46730803 46730891 LTR49 580 - 363 444 185981 9 6 0 42 2 1 29 chain 23866 chr11 135006516 + 46731722 46732014 AluSp 311 + 10 301 111102 118 1 0 173 chain 4622 chr11 135006516 + 46734594 46734650 MIR 256 + 106 162 199383 56 chain 26568 chr11 135006516 + 46737563 46737904 HSMAR2 1300 - 960 1299 97774 280 3 1 58 chain 24231 chr11 135006516 + 46775549 46775835 AluSg7 307 - 10 296 109039 286 chain 171929 chr11 135006516 + 46795426 46797530 L1PA7 6471 + 4313 6470 21822 171 0 1 50 1 0 207 0 23 32 3 14 380 1 0 80 0 1 100 0 2 247 1 0 87 1 6 36 0 1 43 0 10 38 3 2 118 0 1 109 0 1 53 14 13 174 5 4 135 0 3 15 chain 2541 chr11 135006516 + 46804412 46804452 MER103C 291 + 80 121 232654 16 3 4 21 chain 25054 chr11 135006516 + 46889000 46889301 AluSp 311 - 1 301 104528 47 1 0 253 chain 42877 chr11 135006516 + 46904767 46905276 MER9a2 513 + 0 513 65562 43 1 0 122 1 0 59 0 1 91 0 5 192 chain 4516 chr11 135006516 + 46918706 46918834 MER91B 187 - 52 179 200609 35 64 63 29 chain 73364 chr11 135006516 + 46918947 46919750 SVA_D 2077 - 22 825 46853 654 9 8 4 0 1 136 chain 5434 chr11 135006516 + 46929900 46929971 MADE1 96 + 9 96 190664 37 0 16 34 chain 29304 chr11 135006516 + 46930875 46931191 AluYb8 318 + 0 317 87550 131 1 2 184 chain 26746 chr11 135006516 + 46948679 46949022 THE1A 353 + 13 353 97176 71 2 1 24 2 1 92 1 0 151 chain 132187 chr11 135006516 + 46949022 46950589 THE1A-int 1579 + 0 1571 27593 201 4 0 207 0 1 504 0 2 293 0 1 107 0 4 251 chain 27740 chr11 135006516 + 46950597 46950938 THE1A 353 + 0 341 93905 111 1 0 74 0 1 155 chain 24144 chr11 135006516 + 46959931 46960304 L1MC2 1988 - 141 522 109502 35 0 4 13 1 0 21 1 4 50 1 0 28 2 0 11 14 16 14 3 6 179 chain 29493 chr11 135006516 + 46983395 46983766 THE1C 375 - 0 375 86658 25 1 0 123 0 3 135 0 2 87 chain 6143 chr11 135006516 + 46986579 46986652 LOR1a 498 - 410 484 184048 43 0 1 30 chain 3478 chr11 135006516 + 46999061 46999119 MER126 217 - 1 57 215692 17 5 4 9 1 0 26 chain 7464 chr11 135006516 + 47009304 47009404 L1MA1 4479 + 4052 4148 174375 26 1 0 29 2 0 35 1 0 6 chain 80785 chr11 135006516 + 47011306 47012563 L1PA16 3655 - 36 1285 43279 16 33 12 14 3 0 224 0 1 49 15 13 8 0 9 25 1 4 13 22 18 9 1 0 113 6 0 145 2 1 28 1 0 13 1 0 10 2 11 82 1 10 115 15 14 191 58 60 41 chain 488332 chr11 135006516 + 47013796 47019728 L1PA5 6144 - 5 6144 7426 368 0 1 358 1 2 327 3 0 19 0 2 13 38 0 1057 1 0 5 0 3 1860 288 0 161 0 11 783 9 0 90 3 6 457 0 525 91 chain 24471 chr11 135006516 + 47017846 47018117 AluYg6 310 - 4 275 107700 271 chain 4954 chr11 135006516 + 47023082 47023138 L1PA8 5853 - 0 56 195658 56 chain 21135 chr11 135006516 + 47030317 47030597 AluY 311 + 12 299 123425 11 0 5 19 10 11 223 0 1 17 chain 6872 chr11 135006516 + 47055576 47055655 L1PA5 6144 + 6059 6138 178415 79 chain 148778 chr11 135006516 + 47058943 47061054 SVA_D 2077 - 5 2063 24786 530 87 0 105 0 49 27 1 0 180 48 0 83 274 232 105 3 0 33 0 3 190 0 39 320 0 8 37 0 27 44 0 2 44 chain 4788 chr11 135006516 + 47059473 47059522 SVA_D 2077 - 760 809 195329 49 chain 2756 chr11 135006516 + 47059522 47059560 SVA_D 2077 - 723 760 79090 14 1 0 23 chain 3482 chr11 135006516 + 47059873 47059921 SVA_D 2077 - 1123 1205 79090 2 0 36 13 1 0 25 1 0 6 chain 16967 chr11 135006516 + 47060021 47060226 SVA_F 1814 - 698 967 135675 137 5 69 29 0 1 25 1 0 8 chain 24777 chr11 135006516 + 47061107 47061396 AluYk4 311 + 0 288 106017 134 1 0 154 chain 31013 chr11 135006516 + 47080482 47080856 L1PA8A 6298 + 5919 6291 82490 219 1 0 46 1 0 107 chain 21029 chr11 135006516 + 47108984 47109242 AluSc5 308 + 16 273 123817 32 6 5 220 chain 85512 chr11 135006516 + 47118562 47119876 SVA_F 1814 + 842 1813 41339 13 1 0 25 0 2 16 2 1 49 3 18 39 306 0 208 52 0 600 chain 6231 chr11 135006516 + 47118905 47119010 SVA_F 1814 + 664 888 138477 65 0 120 6 1 0 33 chain 1566 chr11 135006516 + 47119237 47119276 SVA_F 1814 + 887 924 172125 1 1 0 10 1 0 26 chain 517476 chr11 135006516 + 47134399 47141140 L1PA6 6164 - 5 6164 5426 518 10 1 324 0 3 752 0 17 282 7 8 317 0 1 378 0 12 65 0 7 249 7 2 238 0 2 511 2 0 138 0 1 21 316 0 454 0 5 425 323 4 600 0 17 57 12 11 172 1 0 45 1 4 258 1 0 22 0 2 40 0 1 195 chain 30213 chr11 135006516 + 47195927 47196245 AluYb9 318 - 0 318 84158 318 chain 22471 chr11 135006516 + 47212382 47212660 AluSp 311 + 11 292 118151 41 6 5 63 0 4 168 chain 21241 chr11 135006516 + 47220945 47221221 AluSc8 310 + 20 295 123051 19 3 0 94 0 2 41 2 1 106 0 1 11 chain 8661 chr11 135006516 + 47231797 47231902 LTR8 732 + 586 691 167416 105 chain 8399 chr11 135006516 + 47248183 47248285 L1MB2 1706 - 696 798 168859 102 chain 12548 chr11 135006516 + 47325457 47325776 L1M2a 2583 - 87 398 150049 104 1 0 16 120 114 24 11 10 43 chain 17537 chr11 135006516 + 47325776 47326067 AluSp 311 - 9 298 134162 6 2 0 176 7 6 20 47 48 33 chain 3985 chr11 135006516 + 47335927 47335994 Charlie1a 1436 + 877 946 207628 19 4 7 4 1 0 39 chain 23347 chr11 135006516 + 47343886 47344166 AluY 311 + 10 287 113936 108 3 0 9 1 0 146 0 1 13 chain 25493 chr11 135006516 + 47405595 47405906 AluY 311 + 0 301 102254 123 8 4 167 6 0 7 chain 23824 chr11 135006516 + 47427603 47427877 AluSp 311 - 25 301 111340 173 0 2 101 chain 28802 chr11 135006516 + 47449877 47450183 AluYa5 310 - 4 310 89893 306 chain 3089 chr11 135006516 + 47461556 47461590 U6 107 - 46 80 223095 34 chain 3280 chr11 135006516 + 47485895 47485931 LTR23 429 + 311 347 219348 36 chain 3252 chr11 135006516 + 47506140 47506175 MIR 256 + 28 63 219962 35 chain 24957 chr11 135006516 + 47506231 47506528 AluSp 311 - 17 310 105020 7 4 0 286 chain 22185 chr11 135006516 + 47541136 47541428 AluY 311 + 1 296 119424 36 6 0 72 10 19 168 chain 21867 chr11 135006516 + 47543465 47543754 AluSp 311 - 14 301 120762 22 0 1 131 14 11 122 chain 21470 chr11 135006516 + 47562154 47562437 AluSg7 307 + 0 281 122257 43 1 0 88 0 1 10 3 0 7 3 6 34 2 0 92 chain 22381 chr11 135006516 + 47568971 47569246 AluSq 315 + 24 310 118580 108 0 3 56 0 8 111 chain 5516 chr11 135006516 + 47598076 47598140 U5 65 - 1 65 189877 64 chain 24018 chr11 135006516 + 47606231 47606519 AluSp 311 - 12 300 110224 288 chain 13855 chr11 135006516 + 47641683 47641839 L1PA4 6152 + 5996 6151 145049 138 1 0 17 chain 6306 chr11 135006516 + 47674251 47674362 MER4D 903 + 602 710 182743 59 23 15 16 0 5 13 chain 23422 chr11 135006516 + 47679273 47679556 AluSg7 307 - 0 287 113528 180 0 1 80 0 3 23 chain 14260 chr11 135006516 + 47708532 47708690 L1PA3long 6157 + 5999 6157 143679 158 chain 26113 chr11 135006516 + 47728845 47729199 THE1B 368 - 0 368 99563 196 15 14 103 1 16 39 chain 22961 chr11 135006516 + 47737351 47737631 AluSp 311 + 0 301 115798 51 0 24 207 3 0 19 chain 12249 chr11 135006516 + 47742608 47742765 AluY 311 + 12 175 151209 18 0 5 95 4 5 40 chain 8142 chr11 135006516 + 47748446 47748544 HY3 101 - 0 101 170278 44 0 3 54 chain 72315 chr11 135006516 + 47766454 47767412 MER11A 1151 + 0 1151 47327 55 0 99 22 8 0 118 4 0 32 0 4 113 0 1 94 0 1 145 5 6 112 0 86 20 6 15 44 1 0 16 0 1 87 0 4 76 chain 54302 chr11 135006516 + 47778110 47778760 L1PA6 6164 - 11 660 56159 33 2 1 107 1 2 303 1 0 203 chain 37906 chr11 135006516 + 47790982 47791445 LTR2 463 + 0 463 72275 290 1 0 72 12 13 88 chain 24238 chr11 135006516 + 47794838 47795133 AluSc 308 + 4 296 109006 104 1 0 65 3 1 122 chain 21927 chr11 135006516 + 47815766 47816037 AluY 311 + 3 293 120513 131 0 1 16 7 25 117 chain 7945 chr11 135006516 + 47821393 47821513 Tigger3b 1229 + 67 201 171360 48 12 26 60 chain 4551 chr11 135006516 + 47841763 47841820 HY4 93 - 9 69 200201 50 0 3 7 chain 45041 chr11 135006516 + 47844128 47844667 L1PA5 6144 - 0 544 63004 11 1 3 88 1 4 438 chain 16429 chr11 135006516 + 47851220 47851478 L1PA14 3548 + 3210 3456 137120 11 1 0 97 1 0 14 14 9 35 2 0 17 1 0 5 1 0 17 1 0 41 chain 43506 chr11 135006516 + 47866264 47867112 MER41A 554 + 0 554 64806 302 7 8 34 0 1 87 296 0 122 chain 41329 chr11 135006516 + 47882222 47882736 MER41C 542 + 0 535 67500 46 0 1 219 1 0 45 0 21 203 chain 23028 chr11 135006516 + 47889945 47890235 AluSp 311 + 11 299 115496 107 0 1 173 3 0 7 chain 79381 chr11 135006516 + 47896759 47898122 MER11A 1151 - 5 1151 43873 70 6 0 14 307 0 86 3 5 53 0 1 28 0 3 27 39 22 153 1 2 113 0 1 20 3 10 6 0 3 235 4 0 140 0 99 55 chain 7624 chr11 135006516 + 47898523 47898747 L1MB3 1562 + 1360 1554 173385 41 59 32 5 2 0 13 9 12 53 18 17 8 3 0 13 chain 21315 chr11 135006516 + 47903229 47903516 AluSz 310 + 8 274 122820 120 22 0 42 0 1 103 chain 2916 chr11 135006516 + 47906347 47906379 U2 167 - 135 167 226752 32 chain 106857 chr11 135006516 + 47913827 47915299 SVA_B 1603 + 0 1264 35015 21 7 12 6 0 2 708 3 1 183 208 0 28 5 1 28 1 0 274 chain 5856 chr11 135006516 + 47914755 47914873 SVA_B 1603 + 975 1053 164166 3 5 0 7 4 9 16 44 7 14 3 0 22 chain 1613 chr11 135006516 + 47914903 47914962 SVA_B 1603 + 878 933 157568 43 4 0 12 chain 4675 chr11 135006516 + 47915782 47916054 L1MCa 1829 + 1592 1814 198806 31 2 0 27 195 147 17 chain 24294 chr11 135006516 + 47964969 47965237 AluSp 311 - 33 301 108680 268 chain 24161 chr11 135006516 + 47999664 47999950 AluSp 311 - 13 300 109420 210 0 1 76 chain 4803 chr11 135006516 + 48019787 48019873 L1MA4 2864 + 2731 2809 197323 7 4 0 3 2 0 24 5 3 41 chain 23862 chr11 135006516 + 48029824 48030099 AluSg7 307 - 21 297 111120 154 0 1 121 chain 4700 chr11 135006516 + 48048307 48048393 L1PB1 5432 - 44 124 198533 18 1 0 24 2 0 15 1 0 4 9 7 12 chain 23402 chr11 135006516 + 48054023 48054338 AluSp 311 + 0 305 113635 46 17 11 242 4 0 6 chain 4723 chr11 135006516 + 48060339 48060398 MER41B 635 + 494 554 198255 17 0 1 42 chain 3113 chr11 135006516 + 48078526 48078561 MIR 256 - 140 175 222676 35 chain 23456 chr11 135006516 + 48098407 48098697 AluSp 311 - 0 291 113343 190 0 1 100 chain 16119 chr11 135006516 + 48100607 48100823 MER30 238 - 0 238 137997 113 4 19 78 0 7 21 chain 28573 chr11 135006516 + 48120069 48120370 AluYg6 310 - 9 310 90854 301 chain 3024 chr11 135006516 + 48133358 48133392 MLT1B 390 - 334 368 224493 34 chain 11185 chr11 135006516 + 48154128 48154249 L1PA5 6144 + 6017 6138 155490 121 chain 126181 chr11 135006516 + 48173017 48174455 L1PA5 6144 - 9 1476 29044 129 0 7 192 0 2 41 1 0 795 0 21 280 chain 40227 chr11 135006516 + 48198714 48199234 LTR10G 522 - 0 522 68992 73 4 1 95 0 1 196 0 5 111 1 0 40 chain 2164 chr11 135006516 + 48206538 48206876 MER4E1 777 + 0 331 61122 17 10 0 167 0 3 144 chain 29228 chr11 135006516 + 48206906 48207248 L1PA4 6152 - 1 340 87915 327 3 0 12 chain 531162 chr11 135006516 + 48207317 48213440 L1PA3long 6157 - 1 6153 4060 834 0 1 639 0 9 315 0 4 409 0 1 444 0 4 933 0 2 383 0 1 1111 0 1 346 5 12 385 6 5 313 chain 2842 chr11 135006516 + 48213453 48213897 MER4E1 777 + 331 769 61122 210 7 0 20 4 5 203 chain 117234 chr11 135006516 + 48223577 48225130 L1PBa 3878 + 1796 3380 32043 146 0 3 5 11 8 124 0 1 375 1 2 247 0 2 144 9 38 100 4 5 218 9 6 160 chain 22077 chr11 135006516 + 48230162 48230431 L1PA7 6471 - 4 271 119897 8 2 0 259 chain 12037 chr11 135006516 + 48248144 48248300 L1PA8A 6298 - 7 164 152045 105 6 7 45 chain 6407 chr11 135006516 + 48251343 48251428 LTR12C 1709 + 669 832 181974 48 0 78 37 chain 515020 chr11 135006516 + 48252233 48258347 L1PA5 6144 - 9 6139 5671 124 4 8 10 4 0 780 1 0 1552 0 3 152 1 0 5 0 1 1478 1 0 4 0 1 554 7 6 43 1 6 380 0 1 359 7 11 178 4 8 229 0 5 4 5 0 47 10 11 170 chain 17493 chr11 135006516 + 48270210 48270413 L1PA8A 6298 - 7 210 134282 203 chain 14094 chr11 135006516 + 48277318 48277479 L1PA7 6471 + 6309 6470 144239 161 chain 193294 chr11 135006516 + 48280750 48282927 L1PA4 6152 + 3960 6144 19748 2054 6 13 117 chain 4445 chr11 135006516 + 48284584 48284791 L1MB3 1562 - 10 189 201396 19 142 114 46 chain 24841 chr11 135006516 + 48300684 48300975 AluSc5 308 + 11 302 105675 291 chain 346077 chr11 135006516 + 48307773 48311804 L1PA4 6152 - 45 4090 11726 583 0 6 6 8 2 202 0 4 1363 1 2 167 0 1 282 0 1 47 0 1 22 2 3 78 0 1 126 14 15 804 0 3 326 chain 57036 chr11 135006516 + 48311806 48312487 L1PA4 6152 + 5315 5996 54512 681 chain 11634 chr11 135006516 + 48312488 48312625 L1PA4 6152 + 6004 6151 153752 25 0 10 112 chain 361339 chr11 135006516 + 48313993 48318318 L1P1 4361 + 1 4328 11333 140 0 1 15 7 3 414 1 0 581 0 3 127 9 0 8 54 63 1026 0 3 326 0 1 453 1 0 786 0 2 197 1 0 155 1 0 23 chain 4592 chr11 135006516 + 48319363 48319420 MER4A1 472 + 415 472 199727 57 chain 52197 chr11 135006516 + 48321406 48322244 L1M1 2793 - 934 1767 57503 173 0 1 8 12 6 107 13 7 57 0 1 129 0 1 37 86 88 18 28 29 113 0 1 57 chain 82968 chr11 135006516 + 48323278 48324242 L1P1 4361 - 680 1643 42350 522 1 0 441 chain 52992 chr11 135006516 + 48334319 48335097 L1PA11 4918 + 3830 4578 57021 85 0 1 412 9 0 52 18 17 10 2 0 67 2 0 14 1 0 20 4 0 9 31 22 15 1 0 15 2 0 9 chain 41608 chr11 135006516 + 48351661 48352123 L1PA3long 6157 - 0 463 67143 44 0 1 418 chain 29121 chr11 135006516 + 48354577 48354921 L1PA4 6152 - 13 363 88449 137 0 2 180 1 5 26 chain 25011 chr11 135006516 + 48362321 48362666 L1PA8 5853 + 5507 5848 104731 5 0 3 47 1 0 46 2 0 74 1 0 5 2 1 52 2 1 18 2 1 88 chain 42568 chr11 135006516 + 48363971 48364478 L1PA7 6471 - 12 543 65940 99 0 24 20 0 1 7 2 1 379 chain 528120 chr11 135006516 + 48367530 48373685 L1PA4 6152 + 0 6146 4389 580 1 0 233 39 22 85 1 2 526 0 1 266 0 1 650 0 1 543 0 1 1368 0 9 536 0 1 218 0 2 256 1 0 707 7 0 138 chain 40319 chr11 135006516 + 48396353 48396937 L1PBa 3878 - 531 1129 68855 83 1 11 12 0 4 9 0 1 4 10 1 146 0 4 7 12 10 20 7 8 226 0 5 47 chain 420543 chr11 135006516 + 48408532 48413579 L1PA4 6152 - 0 6146 9523 10 0 6 827 5 8 850 1 0 142 0 1 368 4 0 59 0 1 133 1 2 177 3 0 201 1 0 114 0 3 490 0 1 204 0 1087 124 1 0 108 1 0 72 0 3 915 0 4 64 22 36 12 19 5 119 chain 22545 chr11 135006516 + 48413594 48413962 L1M1 2793 - 1258 1618 117821 49 5 8 16 0 1 149 1 2 42 8 1 19 2 0 8 20 17 42 1 0 6 chain 147669 chr11 135006516 + 48413988 48415580 L1PA2 6032 - 752 2344 24925 1592 chain 65822 chr11 135006516 + 48415580 48416306 L1PA2 6032 + 5304 6030 50181 726 chain 54653 chr11 135006516 + 48420910 48421519 L1PA3long 6157 - 687 1297 55934 426 0 1 183 chain 50995 chr11 135006516 + 48421519 48422081 L1PA3long 6157 + 5595 6157 58316 562 chain 510740 chr11 135006516 + 48424098 48430009 L1PA4 6152 + 203 6140 6093 372 0 4 387 0 1 67 0 1 90 2 1 117 0 1 274 0 1 375 1 0 206 0 1 67 0 6 192 0 1 803 0 1 6 0 1 73 0 3 686 0 1 1134 1 7 1058 chain 514514 chr11 135006516 + 48431615 48437775 L1PA4 6152 - 1 6146 5723 845 0 5 231 2 3 22 0 2 57 0 1 891 0 1 921 0 1 114 8 9 884 1 0 158 12 0 16 6 0 94 1 0 426 5 4 433 1 2 293 2 1 161 1 0 116 6 0 102 13 14 338 chain 4006 chr11 135006516 + 48443952 48444001 LTR41 747 - 692 741 207288 49 chain 265257 chr11 135006516 + 48445587 48448959 L1PA4 6152 - 9 3142 15427 435 0 2 398 0 4 115 0 50 152 0 1 142 308 12 274 1 0 707 4 0 7 4 8 671 0 1 154 chain 16523 chr11 135006516 + 48448959 48449149 L1P1 4361 + 585 775 136848 190 chain 15745 chr11 135006516 + 48462389 48462623 L1PA7 6471 + 6235 6467 139123 158 0 2 18 5 14 6 9 0 28 4 0 6 chain 100329 chr11 135006516 + 48467432 48468608 L1PA6 6164 + 4797 5972 36684 1035 2 1 139 chain 43927 chr11 135006516 + 48469091 48469601 MER9a1 513 - 0 513 64300 66 0 2 59 1 2 384 chain 469687 chr11 135006516 + 48469601 48475634 L1PA7 6471 - 241 6456 8043 130 3 0 520 0 1 404 0 1 99 0 1 77 7 6 9 1 0 1408 0 3 86 2 1 241 4 0 6 0 4 585 1 0 4 3 5 538 3 5 650 4 0 523 4 5 48 14 15 122 0 10 57 10 11 132 24 194 65 36 37 23 2 1 188 chain 34283 chr11 135006516 + 48494217 48494612 L1PA6 6164 + 5756 6151 77234 395 chain 3134 chr11 135006516 + 48499179 48499413 L1MA9 1812 - 1050 1266 222282 28 12 128 12 16 0 5 117 0 20 11 10 13 chain 31704 chr11 135006516 + 48500197 48500631 L1PA8 5853 + 5426 5853 81321 138 1 0 46 2 0 68 17 15 46 3 2 24 1 0 88 chain 27813 chr11 135006516 + 48519500 48519812 L1PA3long 6157 + 5845 6157 93654 312 chain 3029 chr11 135006516 + 48528290 48528419 THE1D-int 1627 + 1494 1621 224421 23 74 74 4 1 0 22 1 0 4 chain 340237 chr11 135006516 + 48535728 48539533 L1PA3long 6157 - 1 3913 11893 848 0 3 1360 0 1 883 0 102 398 1 2 315 chain 28769 chr11 135006516 + 48539559 48539867 AluYa5 310 - 2 310 90022 308 chain 42052 chr11 135006516 + 48545521 48546009 L1PA4 6152 - 0 492 66552 6 0 5 370 2 1 110 chain 524032 chr11 135006516 + 48549483 48555627 L1PA4 6152 - 9 6152 4762 658 1 2 182 1 2 203 1 0 744 0 4 261 1 2 376 0 1 538 0 9 569 0 1 702 3 5 795 3 0 48 6 7 200 17 0 258 1 0 576 chain 511579 chr11 135006516 + 48563539 48569600 L1PA4 6152 - 1 6149 6017 150 1 0 510 0 82 650 0 1 819 0 1 188 0 1 67 1 0 420 0 1 482 0 1 75 1 6 270 0 1 95 16 10 140 0 1 228 0 1 1948 chain 475732 chr11 135006516 + 48571050 48577085 L1PA6 6164 - 4 6164 7864 6 4 0 21 21 22 102 0 3 7 3 0 172 2 4 1013 0 140 1480 0 1 342 0 2 180 23 0 142 0 1 188 2 0 393 9 5 74 0 1 4 1 0 900 0 25 422 2 1 313 1 2 60 14 0 134 chain 303500 chr11 135006516 + 48577095 48580948 L1P2 5180 - 999 4846 13267 591 0 1 126 8 0 284 3 2 214 11 13 553 10 14 64 1 0 358 13 12 225 0 1 923 0 1 6 1 0 6 1 0 249 33 32 35 17 16 121 chain 482345 chr11 135006516 + 48583131 48588752 L1PA4 6152 - 1 6150 7649 328 2 1 438 1 0 58 2 1 24 1 2 81 0 1 865 0 4 467 0 1 594 1 0 103 1 0 316 0 1 2243 0 525 96 chain 3306 chr11 135006516 + 48593189 48593249 L1MA9 1812 + 1508 1566 218848 20 12 10 28 chain 41770 chr11 135006516 + 48593812 48594267 L1PA2 6032 - 0 455 66942 455 chain 57098 chr11 135006516 + 48594267 48594889 L1PA2 6032 + 4970 5592 54472 622 chain 75028 chr11 135006516 + 48595861 48596738 L1PA4 6152 - 9 887 45958 412 0 1 465 chain 171341 chr11 135006516 + 48596738 48598728 L1PA5 6144 + 4115 6106 21901 1820 0 1 170 chain 33234 chr11 135006516 + 48602305 48602675 L1PA3long 6157 - 796 1166 78541 370 chain 73239 chr11 135006516 + 48602675 48603491 L1PA3long 6157 + 5336 6156 46909 672 0 2 139 0 2 5 chain 30288 chr11 135006516 + 48606825 48607158 L1PA2 6032 - 6 340 83965 19 0 1 314 chain 30694 chr11 135006516 + 48614355 48614700 L1PA5 6144 - 533 878 83046 345 chain 42131 chr11 135006516 + 48614722 48615233 L1PA5 6144 + 5625 6137 66470 365 7 0 6 2 9 12 0 1 119 chain 113508 chr11 135006516 + 48620159 48621493 L1PA4 6152 - 0 1333 33222 161 20 13 683 0 6 470 chain 58821 chr11 135006516 + 48621493 48622185 L1PA4 6152 + 4128 4821 53403 626 0 1 16 6 0 6 1 7 37 chain 518214 chr11 135006516 + 48633302 48639453 L1PA4 6152 - 0 6151 5354 9 4 0 118 0 1 34 15 11 393 0 1 208 5 6 68 0 2 8 1 0 174 2 1 1233 1 0 4 0 1 148 6 7 42 1 0 98 0 1 363 2 1 54 0 1 851 0 2 1619 0 1 60 0 1 630 chain 44239 chr11 135006516 + 48640788 48641307 L1PA4 6152 + 5631 6151 63898 512 0 1 7 chain 65716 chr11 135006516 + 48641313 48642160 L1PA7 6471 + 5614 6462 50240 37 2 0 335 1 4 141 1 2 175 12 11 143 chain 82514 chr11 135006516 + 48656082 48657175 MER11A 1151 - 2 1151 42531 57 1 5 5 5 0 188 0 32 157 1 2 12 6 9 293 0 1 83 0 11 66 1 0 39 1 3 99 0 8 79 chain 446099 chr11 135006516 + 48666045 48671535 L1PA5 6144 - 279 6141 8871 84 0 1 1104 7 18 313 0 4 58 0 1 657 11 12 446 0 1 191 1 2 156 6 12 226 0 1 69 0 341 473 0 1 498 1 2 173 0 1 193 17 0 11 0 17 679 13 14 103 chain 460043 chr11 135006516 + 48674355 48680070 L1PA5 6144 - 27 5779 8396 161 0 1 667 0 1 169 8 0 336 0 2 435 0 4 368 0 2 39 1 2 291 0 1 286 1 3 96 1 0 89 0 1 141 1 30 572 0 2 18 1 2 1155 45 45 72 6 7 481 3 0 206 19 20 47 chain 97234 chr11 135006516 + 48700295 48701489 L1P1 4361 - 20 1216 37405 12 2 1 23 1 0 24 0 2 129 1 0 200 0 2 272 1 0 439 7 8 41 11 12 31 chain 99471 chr11 135006516 + 48701489 48702686 L1PA4 6152 + 4646 5840 36907 655 3 1 48 1 0 490 chain 26307 chr11 135006516 + 48702686 48702996 L1PA4 6152 + 5841 6151 98802 310 chain 489736 chr11 135006516 + 48704596 48710698 L1PA4 6152 + 23 6152 7381 508 4 5 161 5 6 225 0 4 796 13 15 799 22 23 855 0 1 441 0 14 5 0 1 56 0 1 18 0 2 1342 1 0 702 2 1 34 0 1 113 chain 237051 chr11 135006516 + 48721388 48724057 L1PA3long 6157 - 1 2676 16930 419 0 1 429 2 0 424 0 4 389 0 1 245 0 1 553 0 1 47 1 0 4 0 1 156 chain 43656 chr11 135006516 + 48729137 48729624 SVA_A 1864 + 1377 1864 64619 487 chain 240534 chr11 135006516 + 48750828 48753809 L1P1 4361 + 1 2979 16740 121 0 14 20 2 13 18 17 8 379 1 0 247 23 6 1487 8 7 658 chain 493986 chr11 135006516 + 48755597 48761573 L1PA4 6152 + 63 6145 7171 202 0 1 194 6 0 120 1 0 118 6 7 210 0 1 502 0 91 450 3 4 1716 0 1 257 0 3 144 0 1 499 0 2 43 0 1 160 0 2 508 1 5 386 0 2 41 3 2 86 4 13 301 6 0 9 chain 66727 chr11 135006516 + 48766189 48766926 L1PA2 6032 - 4 742 49420 581 0 1 156 chain 466748 chr11 135006516 + 48766926 48772267 L1HS 6032 - 682 6032 8161 459 0 1 1304 0 1 24 2 1 2321 7 8 489 0 1 27 0 7 451 2 1 255 chain 321234 chr11 135006516 + 48783532 48787391 L1PA4 6152 - 9 3796 12545 244 1 2 593 0 3 226 6 2 43 0 1 629 78 0 461 0 1 755 0 1 74 0 1 631 1 3 117 chain 50529 chr11 135006516 + 48793221 48793780 L1PA2 6032 - 7 566 58633 559 chain 198908 chr11 135006516 + 48793791 48796004 L1PA2 6032 + 3254 5469 19287 418 0 1 17 0 1 1778 chain 352560 chr11 135006516 + 48821822 48826151 L1P1 4361 - 42 4359 11534 14 1 0 155 6 5 613 0 1 947 0 11 28 0 1 731 0 1 414 0 9 688 7 0 127 1 0 66 42 17 489 chain 6040 chr11 135006516 + 48868838 48869206 L1PA2 6032 - 6 374 29704 368 chain 561389 chr11 135006516 + 48869246 48875276 L1HS 6032 - 2 6032 307 6030 chain 18334 chr11 135006516 + 48875276 48876393 L1PA2 6032 - 376 1504 29704 1006 0 11 111 chain 42470 chr11 135006516 + 48876394 48876865 L1PA2 6032 + 4059 4530 66047 471 chain 42483 chr11 135006516 + 48885931 48886411 L1PA3long 6157 - 400 880 66032 480 chain 34084 chr11 135006516 + 48886411 48886805 L1PA3long 6157 + 5750 6144 77493 394 chain 50614 chr11 135006516 + 48949264 48949855 L1PA3long 6157 - 2859 3457 58569 126 0 1 94 0 1 362 0 5 9 chain 246501 chr11 135006516 + 48949861 48952717 L1PA3long 6157 + 3295 6156 16419 665 0 2 274 0 1 914 0 1 31 2 1 40 0 1 4 1 0 78 4 8 68 8 7 602 1 0 164 chain 30262 chr11 135006516 + 48975238 48975612 L1PA7 6471 - 2 378 84026 159 1 2 176 0 1 38 chain 133590 chr11 135006516 + 48976397 48978072 SVA_B 1603 - 0 1559 27302 141 0 9 505 0 1 64 4 0 18 1 0 13 1 0 13 80 0 59 40 0 736 chain 3305 chr11 135006516 + 48977157 48977226 SVA_B 1603 - 724 751 189958 12 40 0 10 2 0 5 chain 10143 chr11 135006516 + 49014990 49015199 Tigger3a 397 - 85 344 159882 41 0 7 6 7 0 39 0 1 39 55 104 22 chain 35568 chr11 135006516 + 49025511 49025897 L1PA2 6032 + 5645 6031 75455 386 chain 58452 chr11 135006516 + 49028617 49029657 L1PA7 6471 - 1 807 53715 251 0 1 5 1 0 76 319 0 241 1 86 146 chain 529803 chr11 135006516 + 49061758 49067881 L1PA5 6144 - 2 6141 4213 145 0 1 96 10 9 223 4 0 380 0 1 861 4 5 154 1 9 2746 1 4 804 0 7 694 chain 186080 chr11 135006516 + 49125645 49127630 L1HS 6032 - 0 1985 20409 1985 chain 30842 chr11 135006516 + 49150323 49150679 L1PA5 6144 - 6 363 82778 12 0 1 344 chain 278131 chr11 135006516 + 49161132 49164832 L1P2 5180 + 890 4624 14745 119 0 3 8 10 29 266 6 7 123 13 14 263 1 0 11 1 2 153 6 7 116 11 10 126 0 1 4 2 1 173 1 0 50 0 1 525 21 17 6 0 4 92 42 38 398 0 1 485 0 1 110 0 1 22 3 10 267 0 4 266 chain 11668 chr11 135006516 + 49170589 49170722 L1PA5 6144 + 5910 6043 153608 133 chain 11280 chr11 135006516 + 49181634 49181883 L1PA10 4194 - 1351 1605 155128 57 0 4 25 49 48 22 13 15 9 1 0 28 7 8 38 chain 22381 chr11 135006516 + 49226493 49226767 AluSp 311 + 13 293 118579 168 0 6 106 chain 7886 chr11 135006516 + 49235904 49236004 MER47A 366 + 129 229 171768 100 chain 45219 chr11 135006516 + 49237528 49238036 MER9a1 513 - 0 513 62806 197 0 5 311 chain 3691 chr11 135006516 + 49244075 49244119 U2 167 + 9 53 212057 44 chain 25472 chr11 135006516 + 49299447 49299815 THE1D 372 - 0 364 102350 32 1 0 146 28 25 6 0 1 67 1 0 87 chain 167187 chr11 135006516 + 49331302 49333277 L1PA6 6164 - 2005 3983 22371 629 1 0 229 0 1 110 5 6 566 1 2 290 0 1 144 chain 163655 chr11 135006516 + 49333284 49335267 L1PA6 6164 + 4175 6156 22853 305 3 0 5 5 8 387 0 2 235 6 0 9 25 26 863 6 7 134 chain 211300 chr11 135006516 + 49344683 49348023 HERVH-int 3825 - 0 3824 18414 181 0 1 6 437 661 174 11 0 143 0 1 240 7 6 4 0 1 277 39 44 371 0 29 61 1 2 4 1 0 188 9 0 184 48 18 100 0 3 142 0 3 118 0 1 77 0 265 45 3 2 29 0 1 25 9 8 65 31 30 146 1 3 38 0 2 125 chain 35031 chr11 135006516 + 49366562 49367115 L1PB2 3958 - 120 652 76144 52 12 11 22 2 0 70 1 0 41 24 24 70 4 3 94 2 0 13 1 0 64 12 0 13 1 0 55 chain 22794 chr11 135006516 + 49420272 49420613 THE1B 368 + 0 356 116610 45 0 15 21 1 2 91 1 0 15 7 5 7 0 2 26 6 7 58 1 0 62 chain 30558 chr11 135006516 + 49425097 49425415 AluYb8 318 + 0 318 83303 318 chain 91951 chr11 135006516 + 49468542 49469892 L1PB 1623 + 102 1445 38983 10 2 1 4 1 0 54 4 1 15 1 0 4 9 2 6 0 5 17 7 8 40 1 0 128 0 2 19 4 0 50 16 18 20 6 10 67 5 8 189 1 2 123 1 0 51 0 1 46 0 1 298 1 0 7 7 0 136 chain 62349 chr11 135006516 + 49483666 49484378 L1PA4 6152 - 2 708 51738 145 6 0 561 chain 155712 chr11 135006516 + 49484384 49486132 L1PA4 6152 + 3549 5299 23890 448 0 2 1300 chain 2512 chr11 135006516 + 49490642 49490681 MLT2A1 477 + 439 477 232990 19 2 1 18 chain 94552 chr11 135006516 + 49491135 49492223 L1PA4 6152 - 0 1092 38194 6 0 5 243 2 0 756 0 1 81 chain 21146 chr11 135006516 + 49492223 49492456 L1PA4 6152 + 4828 5061 122451 233 chain 20903 chr11 135006516 + 49494601 49494851 AluSp 311 + 38 287 124264 94 1 0 155 chain 29102 chr11 135006516 + 49501918 49502228 AluYa5 310 - 0 310 88543 310 chain 22414 chr11 135006516 + 49513352 49513860 L1PB1 5432 - 13 494 118412 15 1 0 13 1 0 21 1 0 24 2 0 14 8 5 21 45 35 34 20 18 49 32 25 8 1 0 23 20 18 44 1 0 5 9 10 17 4 6 42 0 1 33 chain 134241 chr11 135006516 + 49527630 49529167 L1PA5 6144 - 0 1540 27159 11 2 1 247 1 0 584 0 4 609 1 2 82 chain 10138 chr11 135006516 + 49529167 49529278 L1PA5 6144 + 4501 4612 157845 111 chain 26684 chr11 135006516 + 49534958 49535305 L1PA10 4194 + 1395 1742 97371 125 3 0 5 0 3 214 chain 10812 chr11 135006516 + 49535369 49535523 HSMAR1 1287 + 1095 1251 156934 62 9 11 83 chain 80695 chr11 135006516 + 49567952 49568904 L1PA5 6144 - 3 962 43243 29 0 2 510 15 0 235 0 20 163 chain 86612 chr11 135006516 + 49568904 49569960 L1P2 5180 + 1132 2352 40922 495 12 180 263 0 1 252 6 0 7 0 1 21 chain 29718 chr11 135006516 + 49616531 49616933 L1PA7 6471 + 6060 6465 85769 78 0 1 136 22 28 94 5 1 67 chain 65989 chr11 135006516 + 49629853 49630581 L1PA3long 6157 - 1 729 50105 728 chain 25212 chr11 135006516 + 49644596 49644869 L1PA2 6032 - 5 278 103676 273 chain 114599 chr11 135006516 + 49646421 49647742 L1PA4 6152 - 0 1318 32922 760 2 1 6 0 1 126 3 0 424 chain 12880 chr11 135006516 + 49662073 49662287 MER30 238 + 0 225 148707 12 20 19 6 6 0 69 3 21 98 chain 24739 chr11 135006516 + 49683968 49684276 AluYk4 311 - 4 308 106228 26 5 2 153 1 0 123 chain 47756 chr11 135006516 + 49713020 49713548 L1PA3long 6157 + 5628 6156 60651 528 chain 6038 chr11 135006516 + 49720470 49720541 L1PA8A 6298 + 6220 6291 184909 71 chain 7564 chr11 135006516 + 49726130 49726213 L1HS 6032 + 5949 6032 173769 83 chain 294021 chr11 135006516 + 49733431 49736735 L1PA2 6032 - 1 6032 13763 1852 0 1 832 7 5 427 0 2728 186 chain 547946 chr11 135006516 + 49746835 49752869 L1PA2 6032 + 1 6030 1715 588 3 0 2752 7 5 2684 chain 129222 chr11 135006516 + 49757598 49759699 HUERS-P3b-int 2065 - 50 2050 28261 70 24 23 38 4 0 14 1 0 39 1 0 13 6 3 14 2 0 72 3 1 89 1 0 25 1 0 13 2 0 84 25 2 44 1 0 10 1 4 5 3 0 62 53 71 98 0 1 43 41 39 41 28 29 213 1 0 26 2 1 10 1 0 44 1 0 22 0 7 299 0 4 27 1 0 101 94 15 204 4 0 80 chain 24897 chr11 135006516 + 49768115 49768405 AluYk4 311 - 11 295 105372 170 6 0 114 chain 126365 chr11 135006516 + 49783985 49785551 L1PA7 6471 - 2 1727 28988 144 11 12 294 0 4 251 0 1 53 0 1 95 0 2 275 5 6 222 3 1 35 0 148 103 0 4 15 1 0 59 chain 48949 chr11 135006516 + 49785552 49786149 L1PA7 6471 + 4143 4746 59781 280 0 4 97 0 2 220 chain 552191 chr11 135006516 + 49796675 49802692 L1PA2 6032 - 4 6020 1171 2237 0 1 3660 0 4 21 6 0 93 chain 18172 chr11 135006516 + 49813294 49813499 SVA_B 1603 - 0 205 132403 205 chain 427263 chr11 135006516 + 49814706 49819280 L1HS 6032 - 0 4574 9364 4574 chain 120452 chr11 135006516 + 49819280 49820801 SVA_C 1631 - 186 1628 30887 438 40 0 63 39 0 19 0 1 37 45 0 39 0 40 650 0 1 137 0 3 14 chain 2418 chr11 135006516 + 49819831 49819860 SVA_C 1631 - 747 775 200746 11 1 0 17 chain 2024 chr11 135006516 + 49819939 49819961 SVA_C 1631 - 676 698 191685 22 chain 30038 chr11 135006516 + 49852480 49852854 L1PA7 6471 + 6093 6466 84689 38 0 1 181 0 1 142 3 0 10 chain 7883 chr11 135006516 + 49861981 49862080 Tigger3c 601 - 70 169 171791 99 chain 35562 chr11 135006516 + 49864359 49864811 LTR7Y 441 - 19 441 75464 156 0 1 100 7 11 9 35 0 145 chain 416859 chr11 135006516 + 49887829 49892607 L1PA4 6152 + 1366 6152 9606 1768 1 6 163 0 3 8 4 1 1291 0 1 57 0 1 34 3 1 251 0 1 349 0 1 17 0 1 832 chain 29727 chr11 135006516 + 49899975 49900349 L1PA7 6471 - 2 378 85730 159 1 2 176 0 1 38 chain 59799 chr11 135006516 + 49932646 49933357 SVA_B 1603 - 0 901 52932 641 16 12 28 0 195 18 1 0 7 chain 10782 chr11 135006516 + 49933896 49934024 L1PA4 6152 + 4906 5034 157065 128 chain 98804 chr11 135006516 + 49934025 49935142 L1PA4 6152 + 5034 6151 37070 1117 chain 314048 chr11 135006516 + 49948599 49952152 L1PA3long 6157 - 1 3558 12850 153 0 1 1640 0 2 599 0 1 383 1 0 187 1 2 589 chain 30409 chr11 135006516 + 49956165 49956598 L1PA8 5853 - 0 427 83667 92 2 1 19 3 2 41 22 20 70 2 0 44 1 0 41 1 2 95 chain 32493 chr11 135006516 + 49962209 49962605 L1PA6 6164 - 13 408 80037 133 16 15 247 chain 194529 chr11 135006516 + 49967090 49969368 L1PA4 6152 - 1452 3738 19623 62 4 5 282 0 8 1108 0 1 60 5 3 347 1 0 10 0 1 399 chain 34454 chr11 135006516 + 49969368 49969777 L1PA4 6152 + 4712 5123 76723 367 0 1 38 0 1 4 chain 85960 chr11 135006516 + 49969778 49970782 L1PA4 6152 + 5123 6143 41170 556 0 2 52 1 14 27 0 1 368 chain 34008 chr11 135006516 + 49986898 49987301 L1PA7 6471 + 5827 6230 77605 403 chain 33190 chr11 135006516 + 49987301 49987687 MER9a1 513 + 0 386 78909 386 chain 210555 chr11 135006516 + 49987687 49990200 L1P2 5180 + 2662 5178 18463 553 1 0 1142 0 4 262 0 3 464 1 0 46 1 0 38 1 0 4 chain 19225 chr11 135006516 + 49992835 49993072 L1PA7 6471 - 3 236 129450 7 4 0 226 chain 10979 chr11 135006516 + 49999940 50000209 L1PB1 5432 + 5178 5424 156276 42 2 1 16 1 0 44 6 5 10 1 0 5 2 0 12 78 63 28 1 0 16 1 0 4 chain 357768 chr11 135006516 + 50026514 50030716 L1P1 4361 + 1 4238 11407 256 9 9 431 1 27 311 0 2 335 6 7 1790 0 1 92 0 3 82 1 0 12 6 0 788 0 9 82 chain 28346 chr11 135006516 + 50030716 50031031 L1PA4 6152 + 5826 6141 91775 315 chain 49051 chr11 135006516 + 50080563 50081090 L1PA2 6032 + 5354 5881 59710 527 chain 13946 chr11 135006516 + 50081091 50081241 L1PA2 6032 + 5881 6031 144769 150 chain 39551 chr11 135006516 + 50081744 50082190 L1PA4 6152 + 5704 6150 69955 446 chain 86085 chr11 135006516 + 50090310 50091336 LTR5A 1029 - 0 1029 41127 438 0 2 103 0 2 337 1 0 147 chain 20143 chr11 135006516 + 50092925 50093178 L1P1 4361 + 4091 4341 126698 60 1 0 154 1 0 23 2 1 12 chain 20445 chr11 135006516 + 50100979 50101263 THE1A 353 + 36 321 125770 40 12 13 117 0 3 8 3 0 104 chain 125200 chr11 135006516 + 50101295 50102863 THE1A-int 1579 + 0 1571 29323 471 0 4 27 5 4 1065 chain 42153 chr11 135006516 + 50103912 50104381 L1PA2 6032 - 59 532 66450 92 0 4 377 chain 510924 chr11 135006516 + 50108022 50114159 L1PA5 6144 + 3 6140 6076 468 16 17 524 0 1 271 14 0 331 0 1 3041 6 7 547 0 1 82 0 1 4 8 12 380 2 6 443 chain 38634 chr11 135006516 + 50115377 50115810 L1PA3long 6157 - 912 1345 71242 433 chain 79630 chr11 135006516 + 50115829 50116728 L1PA3long 6157 + 5258 6157 43767 899 chain 108842 chr11 135006516 + 50122186 50123737 LTR12C 1709 - 0 1709 34478 77 15 14 118 0 1 87 0 4 180 27 20 88 2 0 8 1 0 272 16 15 18 0 119 192 29 32 42 4 3 4 0 1 23 10 53 42 9 5 8 0 1 4 0 3 275 chain 12780 chr11 135006516 + 50138706 50138850 L1PA2 6032 - 1150 1295 148050 31 0 1 113 chain 103576 chr11 135006516 + 50138850 50139995 L1PA2 6032 + 4886 6032 35839 215 1 0 4 0 1 589 0 1 336 chain 130913 chr11 135006516 + 50142260 50143837 LTR12C 1709 + 0 1709 27880 464 1 0 255 0 118 237 0 2 31 1 11 106 0 4 112 3 1 130 0 1 237 chain 26382 chr11 135006516 + 50147695 50148009 L1PA7 6471 + 6130 6444 98484 314 chain 521880 chr11 135006516 + 50152924 50159075 L1PA4 6152 - 9 6146 4972 258 0 1 1254 1 0 278 0 4 571 11 5 606 0 1 190 19 0 534 0 1 1281 0 3 92 0 2 1056 chain 7350 chr11 135006516 + 50160204 50160295 MSTB 430 + 2 93 175092 91 chain 4469 chr11 135006516 + 50161718 50161843 MLT1D 503 + 29 153 201127 50 1 0 5 8 9 10 36 35 15 chain 26958 chr11 135006516 + 50173434 50173900 LTR22B 500 + 0 500 96417 30 17 26 66 39 35 200 36 63 58 1 2 7 0 1 12 chain 42602 chr11 135006516 + 50176270 50176756 L1PA4 6152 + 5657 6152 65896 351 0 7 128 0 2 7 chain 28914 chr11 135006516 + 50198493 50198800 AluYg6 310 - 3 310 89399 307 chain 411531 chr11 135006516 + 50212340 50217064 L1PA4 6152 - 0 4739 9758 605 15 15 148 1 0 5 0 2 73 1 6 2094 1 2 36 0 1 588 0 3 186 0 4 971 chain 5407 chr11 135006516 + 50217064 50217191 L1PA5 6144 - 117 207 190526 45 53 16 29 chain 44935 chr11 135006516 + 50224287 50224798 MER9a1 513 + 0 513 63131 454 0 2 57 chain 5852 chr11 135006516 + 50233878 50233950 tRNA-Ala-GCA 72 - 0 72 186672 72 chain 70351 chr11 135006516 + 50240123 50241155 MER11A 1151 + 0 1151 48239 93 23 104 19 10 18 58 8 4 147 0 1 90 12 13 24 1 0 111 6 9 86 0 2 21 10 9 10 7 40 61 0 1 6 5 1 184 2 1 38 chain 32526 chr11 135006516 + 50251112 50251511 L1PA6 6164 + 5766 6159 79985 65 0 1 178 1 0 143 6 0 6 chain 288954 chr11 135006516 + 50270865 50274419 L1PA7 6471 - 1 3588 14089 72 3 1 625 1 19 118 0 1 17 0 3 128 3 4 63 3 0 156 0 1 12 4 3 144 6 6 423 0 8 145 0 3 260 0 1 254 0 1 21 7 10 365 8 6 614 0 1 102 chain 511185 chr11 135006516 + 50283280 50289414 L1PA4 6152 - 1 6142 6051 714 0 3 1082 0 4 742 4 3 131 4 2 1149 0 1 4 1 0 1025 14 0 55 0 1 91 0 6 162 0 1 199 19 21 231 0 3 263 0 4 6 12 12 226 chain 125840 chr11 135006516 + 50294008 50295584 THE1A-int 1579 - 1 1579 29146 1072 5 4 27 0 4 234 1 0 237 chain 24188 chr11 135006516 + 50295584 50295902 THE1A 353 - 0 317 109284 136 3 0 8 0 3 96 2 1 73 chain 21884 chr11 135006516 + 50298475 50298829 THE1D 372 - 15 357 120696 164 26 27 32 1 5 45 4 0 6 19 6 57 chain 20143 chr11 135006516 + 50303751 50304004 L1P1 4361 - 20 270 126699 12 2 1 23 1 0 155 1 0 59 chain 86094 chr11 135006516 + 50305595 50306621 LTR5A 1029 + 0 1029 41122 147 1 0 337 0 2 104 0 2 437 chain 39551 chr11 135006516 + 50314745 50315191 L1PA4 6152 - 2 448 69956 446 chain 62647 chr11 135006516 + 50315694 50316372 L1PA2 6032 - 1 678 51609 150 1 0 527 chain 282021 chr11 135006516 + 50345754 50349187 L1PA5 6144 + 2715 6134 14533 455 0 1 578 5 8 5 3 0 921 0 1 185 1 0 261 13 1 166 3 0 249 2 1 40 0 1 155 0 1 147 1 0 99 1 2 14 1 0 128 chain 67553 chr11 135006516 + 50359094 50360104 MER11A 1151 + 0 1144 49418 46 13 113 28 1 0 107 4 0 90 1 0 4 0 1 40 14 15 90 34 35 61 6 7 47 0 1 61 0 1 56 1 0 16 6 40 82 0 1 29 0 1 113 7 6 53 chain 271709 chr11 135006516 + 50417665 50433667 L1PA4 6152 - 11 4095 15098 830 12471 549 23 0 2 798 0 1 261 3 0 473 0 1 289 1 2 346 0 1 251 0 1 156 6 0 6 0 6 88 chain 109870 chr11 135006516 + 50433667 50435024 L1PA4 6152 + 4777 6131 34230 451 3 1 72 2 0 233 0 1 190 0 1 166 1 0 239 chain 38627 chr11 135006516 + 50449053 50449603 HERVK11-int 2540 - 302 849 71257 119 15 19 70 6 5 188 1 0 107 16 11 28 chain 172108 chr11 135006516 + 50456580 50459077 L1PA5 6144 + 3853 6129 21799 170 0 3 312 9 13 279 1 3 120 0 23 217 259 3 109 0 2 53 1 7 48 1 0 79 0 1 6 8 4 72 1 0 30 2 1 570 11 12 139 chain 23587 chr11 135006516 + 50457688 50457947 L1PA2 6032 + 5771 6030 112645 259 chain 283004 chr11 135006516 + 50469392 50473098 HERVK9-int 4720 + 36 4720 14471 13 8 5 4 1 0 66 1 0 7 2 1 26 13 12 516 0 1 377 0 3 177 0 1 49 4 5 146 0 1 50 7 931 38 1 0 4 0 1 595 3 2 155 0 52 216 4 3 81 0 1 103 1 0 438 0 1 182 0 1 113 0 1 266 0 1 39 chain 232019 chr11 135006516 + 50505660 50508229 L1PA3long 6157 + 3580 6149 17195 158 2 1 2084 0 1 325 chain 71670 chr11 135006516 + 50512083 50513001 HERVK9-int 4720 + 3370 4290 47618 493 0 1 370 8 9 47 chain 39969 chr11 135006516 + 50519491 50520061 L1PA7 6471 - 3 596 69366 10 4 1 148 11 12 15 16 17 252 16 40 98 chain 168747 chr11 135006516 + 50520061 50522017 L1PA4 6152 + 4190 6146 22195 1412 8 9 175 1 0 360 chain 75300 chr11 135006516 + 50590741 50592053 HERVK11-int 2540 - 306 1554 45871 107 19 25 72 13 12 183 1 0 104 26 21 420 82 51 11 1 0 12 11 1 18 71 67 65 2 0 21 56 41 17 chain 99733 chr11 135006516 + 50607172 50608331 L1PA4 6152 - 946 2106 36846 1121 0 1 38 chain 75249 chr11 135006516 + 50608331 50609249 L1PA4 6152 + 5205 6145 45896 95 0 1 295 4 10 190 0 1 100 1 2 147 4 17 82 chain 48107 chr11 135006516 + 50613199 50613789 L1PA4 6152 + 5568 6151 60396 209 6 0 121 2 1 252 chain 25357 chr11 135006516 + 50615682 50615985 L1PA4 6152 - 18 321 102909 303 chain 509566 chr11 135006516 + 50653605 50659777 L1PA3long 6157 + 4 6157 6201 39 27 18 727 0 1 1579 1 2 327 1 0 150 0 1 356 5 6 298 1 0 139 22 11 288 0 1 1436 4 5 233 2 0 477 6 5 54 chain 513135 chr11 135006516 + 50662455 50668606 L1PA3long 6157 - 0 6153 5872 156 2 1 405 5 0 512 0 1 1229 0 1 542 0 1 99 0 1 512 1 0 260 0 3 67 0 1 390 1 0 4 0 1 729 1 0 201 0 1 159 0 1 670 52 57 6 5 0 143 chain 82727 chr11 135006516 + 50672191 50673091 L1HS 6032 + 5130 6030 42449 900 chain 170060 chr11 135006516 + 50682857 50684834 L1PA3long 6157 + 3584 5563 22041 1207 0 1 333 0 1 254 1 0 4 1 2 177 chain 488751 chr11 135006516 + 50702410 50710435 L1PA3long 6157 - 245 6153 7416 610 1 2 629 0 1 98 0 9 1185 2 0 423 0 1 324 1 3 454 1 2 308 2130 0 71 0 1 69 0 1 363 30 32 75 5 2 107 5 4 296 5 4 4 0 1 829 chain 31285 chr11 135006516 + 50706456 50706796 L1PA3long 6157 - 1707 2047 81859 340 chain 75208 chr11 135006516 + 50706796 50707661 L1PA3long 6157 + 4460 5326 45916 846 0 1 19 chain 68324 chr11 135006516 + 50707676 50708492 L1PA3long 6157 + 5342 6157 49114 363 8 7 289 1 0 6 0 1 149 chain 520661 chr11 135006516 + 50772521 50778535 L1PA3long 6157 - 0 6156 5088 20 1 0 127 1 6 6 4 0 2499 0 7 229 0 1 787 0 1 1316 3 4 57 8 9 182 11 139 25 0 1 534 1 2 39 14 15 150 chain 209153 chr11 135006516 + 51096136 51098559 L1PA3long 6157 - 0 2425 18486 137 4 0 7 1 4 460 0 3 143 20 19 1439 0 1 212 chain 217822 chr11 135006516 + 51098560 51149319 L1PA3long 6157 + 2219 6157 18013 364 4 5 202 5 6 434 0 4 450 47329 0 1095 0 502 876 chain 118937 chr11 135006516 + 51126400 51127894 L1PA4 6152 - 0 1494 31442 115 0 1 32 30 29 669 7 6 228 0 1 413 chain 98145 chr11 135006516 + 51127901 51129106 L1P1 4361 + 3141 4341 37240 54 0 1 7 2 1 240 0 1 238 2 0 241 1 0 227 1 0 154 1 0 23 2 1 12 chain 23287 chr11 135006516 + 51154429 51154682 L1PA2 6032 - 359 612 114271 253 chain 32742 chr11 135006516 + 51154682 51155045 L1PA2 6032 + 5666 6030 79629 5 0 1 358 chain 23833 chr11 135006516 + 51161930 51162234 L1P1 4361 - 851 1156 111291 126 0 1 102 0 1 65 1 0 10 chain 55882 chr11 135006516 + 51162235 51162917 L1P1 4361 + 3520 4202 55191 119 0 1 151 0 1 4 1 0 160 0 1 4 1 0 189 1 0 52 chain 541668 chr11 135006516 + 51164742 51170764 L1PA2 6032 - 2 6030 2566 21 2 1 650 0 1 458 0 1 668 0 4 1093 0 1 562 0 1 2313 1 0 254 chain 213215 chr11 135006516 + 51222957 51246678 L1PA3long 6157 - 9 2870 18283 450 0 1 600 0 1 547 0 1 35 0 1 231 20865 0 766 0 1 227 chain 6368 chr11 135006516 + 51225076 51225873 L1PA3long 6157 + 3207 4005 20305 74 0 1 723 chain 14741 chr11 135006516 + 51246678 51248523 L1PA3long 6157 + 4292 6157 20305 28 0 1 432 0 8 261 0 6 350 0 1 488 0 3 28 0 1 258 chain 83253 chr11 135006516 + 51263334 51264322 LTR13 1007 - 0 989 42232 81 0 4 493 3 0 411 chain 98964 chr11 135006516 + 51268200 51269333 L1HS 6032 - 4893 6025 37034 883 1 0 249 chain 433847 chr11 135006516 + 51269333 51274166 L1PA2 6032 + 1188 6026 9219 3034 0 4 692 0 1 158 0 1 803 1 0 145 chain 29192 chr11 135006516 + 51274887 51275231 L1PA5 6144 - 38 383 88083 301 0 1 43 chain 520875 chr11 135006516 + 51275273 51281406 L1PA3long 6157 - 0 6145 5071 188 0 1 590 1 0 78 0 2 804 0 2 107 0 1 64 0 1 75 0 1 17 1 0 1169 0 1 456 0 1 54 0 1 217 2 1 1074 0 1 64 2 1 226 0 4 629 11 10 283 5 6 16 chain 329876 chr11 135006516 + 51281980 51285898 L1PA4 6152 - 6 3928 12207 246 0 1 4 1 0 82 0 1 456 0 1 54 0 1 508 0 2 1271 2 0 10 0 2 1194 1 0 89 chain 486292 chr11 135006516 + 51315647 51321664 L1PA4 6152 - 156 6150 7508 37 0 1 234 0 2 238 0 4 356 0 1 257 0 1 235 0 1 228 0 1 115 27 0 604 1 0 2424 13 9 193 0 1 14 1 0 226 3 0 5 0 3 127 9 7 670 chain 292264 chr11 135006516 + 51328678 51331926 L1PA3long 6157 - 3 3341 13879 116 0 90 3132 chain 214037 chr11 135006516 + 51331926 51334403 L1HS 6032 + 219 2687 18221 37 1 0 552 3 0 846 4 0 188 6 4 718 5 6 117 chain 79101 chr11 135006516 + 51353108 51354118 MER11B 1079 - 20 1052 43999 4 0 1 285 1 3 265 0 1 106 0 1 65 0 17 284 chain 83850 chr11 135006516 + 51355133 51356447 HERVK11-int 2540 - 307 1555 41967 17 8 0 105 0 5 7 1 0 69 14 13 180 1 0 107 14 11 430 21 1 32 14 3 14 4 11 15 14 4 21 3 0 8 7 6 31 23 22 56 2 0 34 1 0 22 23 8 16 chain 246128 chr11 135006516 + 51373894 51376877 L1PA4 6152 + 3143 6141 16439 30 3 5 56 4 3 1225 0 5 211 0 11 202 3 2 245 2 0 860 10 11 132 chain 29804 chr11 135006516 + 51376923 51377273 L1PA4 6152 + 5315 5666 85420 52 1 2 297 chain 39375 chr11 135006516 + 51377276 51377757 L1PA4 6152 + 5666 6152 70210 475 0 5 6 chain 65737 chr11 135006516 + 51401852 51402691 L1PA7 6471 - 9 849 50229 154 1 0 171 5 6 138 0 3 340 11 9 19 chain 43372 chr11 135006516 + 51402720 51403239 L1PA4 6152 - 1 521 64966 7 0 1 252 0 1 4 1 0 255 chain 505231 chr11 135006516 + 51404572 51410703 L1PA4 6152 + 1 6152 6513 124 6 20 11 25 11 464 0 1 60 0 1 347 0 1 161 8 8 26 1 0 179 4 5 35 0 4 859 2 4 784 0 1 58 0 1 714 0 1 4 1 0 190 0 1 68 0 1 61 2 3 426 1 0 740 10 11 342 0 2 294 0 1 46 5 7 62 0 1 11 chain 35416 chr11 135006516 + 51421448 51421848 L1PA4 6152 + 2624 3025 75661 154 0 1 246 chain 267986 chr11 135006516 + 51421848 51424971 L1PA4 6152 + 3026 6151 15294 326 0 1 552 0 2 709 0 1 18 2 1 71 1 0 592 1 2 833 1 0 17 chain 30284 chr11 135006516 + 51428439 51428782 L1PA4 6152 + 5660 6001 83982 110 3 1 230 chain 12647 chr11 135006516 + 51428782 51428921 L1PA4 6152 + 6002 6141 149649 139 chain 7376 chr11 135006516 + 51441863 51442002 THE1D-int 1627 - 6 143 174934 4 1 0 28 19 17 46 8 9 33 chain 31503 chr11 135006516 + 51469291 51469725 L1PA8 5853 - 0 427 81640 93 1 0 19 3 2 46 17 15 70 2 0 44 1 0 138 chain 32664 chr11 135006516 + 51475323 51475719 L1PA6 6164 - 13 408 79741 135 1 0 260 chain 388192 chr11 135006516 + 51494267 51499562 L1P2 5180 + 13 5178 10512 134 240 210 89 18 0 69 1 0 47 76 1 48 2 3 124 21 0 49 0 15 330 4 0 201 11 12 895 0 1 401 8 9 330 0 1 190 1 0 90 0 3 112 1 0 786 0 4 463 6 5 6 0 1 22 3 1 12 7 6 404 1 0 49 1 0 38 1 0 4 chain 23327 chr11 135006516 + 51500000 51500294 L1PA7 6471 + 5934 6225 114048 165 3 0 126 chain 41088 chr11 135006516 + 51500299 51500808 MER9a1 513 + 0 513 67779 334 0 1 49 1 2 59 1 3 65 chain 101772 chr11 135006516 + 51501278 51502448 L1PA4 6152 - 193 1369 36326 665 2 0 281 0 7 23 0 1 199 chain 18152 chr11 135006516 + 51507248 51507485 L1PA7 6471 - 3 236 132453 7 4 0 226 chain 4549 chr11 135006516 + 51512295 51512347 L1PA3long 6157 + 6090 6142 200232 52 chain 14769 chr11 135006516 + 51516244 51516418 L1PA4 6152 + 5826 6001 142032 11 0 1 163 chain 12484 chr11 135006516 + 51516418 51516559 L1PA4 6152 + 6002 6143 150322 141 chain 15061 chr11 135006516 + 51520652 51520839 L1P1 4361 - 3586 3773 140710 187 chain 272351 chr11 135006516 + 51520839 51523974 L1PA4 6152 + 3007 6143 15058 1628 1 0 464 0 1 890 0 1 152 chain 3733 chr11 135006516 + 51525569 51525615 LTR41 747 + 9 55 211417 46 chain 511617 chr11 135006516 + 51531810 51537970 L1PA4 6152 + 2 6152 6010 458 6 0 120 1 0 156 1 0 655 25 26 477 1 0 844 0 1 23 0 1 925 0 1 334 9 12 258 0 1 692 0 1 1007 6 0 152 4 0 6 chain 501626 chr11 135006516 + 51539543 51545451 L1PA4 6152 - 6 5949 6747 328 0 2 662 0 5 67 1 7 616 0 1 615 2 1 4 0 1 1329 1 0 141 0 1 581 0 2 328 0 12 284 0 3 161 0 3 719 1 2 68 chain 55633 chr11 135006516 + 51548035 51548646 L1PA3long 6157 + 4860 5471 55346 611 chain 115153 chr11 135006516 + 51553011 51554461 L1PA4 6152 + 7 1463 32593 235 11 15 904 0 3 180 1 0 119 chain 177481 chr11 135006516 + 51554461 51556573 L1PA4 6152 + 2550 4664 21209 212 0 1 402 0 1 84 0 3 627 0 1 59 4 0 367 1 2 348 1 0 7 chain 104246 chr11 135006516 + 51556579 51557807 L1PA4 6152 + 4671 5899 35677 947 4 5 272 1 0 4 chain 18404 chr11 135006516 + 51557807 51558050 L1PA4 6152 + 5900 6143 131767 196 5 14 7 9 0 26 chain 241767 chr11 135006516 + 51564477 51567242 L1PA3long 6157 - 1 2777 16682 1232 0 1 373 0 1 498 0 1 31 0 8 322 0 1 304 1 0 4 chain 539887 chr11 135006516 + 54714442 54720445 L1PA2 6032 + 2 6012 2830 254 1 0 2313 0 1 562 0 1 1096 0 4 665 0 1 458 0 1 654 chain 56141 chr11 135006516 + 54722289 54722971 L1P1 4361 - 159 841 55042 51 1 0 190 1 0 4 0 1 316 0 1 119 chain 23833 chr11 135006516 + 54722972 54723276 L1P1 4361 + 3205 3510 111290 14 1 0 66 0 1 97 0 1 126 chain 32668 chr11 135006516 + 54730161 54730524 L1PA2 6032 - 2 366 79737 358 0 1 5 chain 23287 chr11 135006516 + 54730524 54730777 L1PA2 6032 + 5420 5673 114270 253 chain 219271 chr11 135006516 + 54735714 54786474 L1PA3long 6157 - 0 3938 17929 873 0 502 1098 47330 0 450 0 4 434 5 6 204 0 1 366 chain 99318 chr11 135006516 + 54755940 54757131 L1P1 4361 - 33 1220 36948 23 1 0 155 1 0 226 1 0 248 2 0 231 0 1 303 chain 117350 chr11 135006516 + 54757138 54758632 L1PA4 6152 + 4658 6152 32010 413 0 1 228 7 6 285 0 1 4 2 1 378 30 29 32 0 1 115 chain 212562 chr11 135006516 + 54786475 54788898 L1PA3long 6157 + 3732 6157 18245 214 0 1 1437 1 0 162 0 3 466 1 0 142 chain 36838 chr11 135006516 + 54811543 54811955 L1PA4 6152 + 5400 5813 73751 273 0 1 139 chain 9676 chr11 135006516 + 54826497 54826608 L1PA2 6032 - 2 113 162211 111 chain 522225 chr11 135006516 + 54851852 54858007 L1PA3long 6157 + 6 6157 4934 1097 28 20 114 0 1 1088 1 0 540 0 1 449 4 5 1024 9 13 1020 1 0 637 1 0 142 chain 26526 chr11 135006516 + 54875973 54876269 L1PA3long 6157 - 3066 3362 97952 296 chain 3685 chr11 135006516 + 54876269 54876312 L1PA3long 6157 + 3070 3113 212166 43 chain 25800 chr11 135006516 + 54876312 54876618 L1PA3long 6157 + 3114 3421 100870 256 3 4 47 chain 244105 chr11 135006516 + 54876620 54879344 L1PA3long 6157 + 3425 6152 16555 1222 0 1 659 0 1 822 0 1 21 chain 240136 chr11 135006516 + 54895342 54898316 L1P1 4361 + 4 2979 16766 118 0 14 416 7 6 16 1 0 240 30 13 142 6 5 63 0 2 555 0 1 443 1 2 71 0 1 4 1 0 197 0 3 663 chain 499872 chr11 135006516 + 54900201 54906322 L1PA4 6152 + 16 6151 6845 118 14 0 8 44 58 65 0 1 190 12 6 114 1 0 122 1 2 35 0 1 177 1 2 334 1 2 187 0 3 991 0 4 766 2 1 21 0 1 445 11 12 760 0 1 186 0 1 648 0 4 16 1 3 850 chain 491003 chr11 135006516 + 54935015 54941140 L1PA4 6152 - 9 6140 7319 244 1 2 201 1 0 266 0 1 647 4 5 889 14 13 49 7 8 135 0 1 6 0 2 165 0 2 280 17 14 1145 1 0 82 0 1 375 0 24 434 10 20 89 0 2 202 63 12 110 16 17 114 7 6 24 0 1 83 28 29 269 8 3 89 0 20 50 chain 64729 chr11 135006516 + 54965824 54966518 L1HS 6032 - 0 694 50685 694 chain 41415 chr11 135006516 + 54966518 54966964 L1HS 6032 + 4868 5314 67399 446 chain 38930 chr11 135006516 + 54969362 54969799 L1PA2 6032 + 5595 6032 70828 437 chain 51184 chr11 135006516 + 54976439 54977039 L1PA4 6152 + 4596 5195 58200 559 1 0 40 chain 78700 chr11 135006516 + 54977051 54978020 L1PA4 6152 + 5199 6152 44186 162 18 0 64 0 1 577 0 1 148 chain 349964 chr11 135006516 + 55002122 55006450 L1P1 4361 - 38 4359 11608 18 1 0 155 1 0 748 0 2 1617 1 3 540 1 0 4 1 2 495 1 0 38 7 0 118 10 9 572 chain 27755 chr11 135006516 + 55057373 55057741 L1PA7 6471 + 6093 6468 93850 38 0 1 65 6 11 101 0 1 158 chain 8079 chr11 135006516 + 55066857 55066956 Tigger3c 601 - 70 169 170596 99 chain 18212 chr11 135006516 + 55089602 55089828 L1P1 4361 - 20 243 132306 12 2 1 23 1 0 155 1 0 32 chain 36538 chr11 135006516 + 55089828 55090234 L1PA3long 6157 + 5609 6014 74186 283 1 0 122 chain 12204 chr11 135006516 + 55090234 55090368 L1PA3long 6157 + 6015 6149 151408 134 chain 486115 chr11 135006516 + 55096771 55102904 L1PA6 6164 - 2 6164 7519 335 11 13 499 1 0 77 0 1 5 1 0 558 0 1 777 0 1 192 1 0 202 1 11 267 0 1 32 0 1 309 0 1 32 0 2 1396 1 0 34 0 1 206 0 1 238 5 30 428 1 0 309 37 53 8 15 0 22 30 16 103 chain 293757 chr11 135006516 + 55102914 55106501 L1P2 5180 - 999 4579 13783 715 9 1 294 2 0 159 2 1 5 0 1 54 0 1 31 0 1 745 1 2 23 0 1 198 1 0 225 0 1 733 0 1 196 8 6 186 chain 8904 chr11 135006516 + 55110144 55110247 L1PA5 6144 - 4 107 166117 103 chain 13486 chr11 135006516 + 55112449 55112601 L1PA2 6032 + 5880 6032 146400 152 chain 22583 chr11 135006516 + 55134925 55135238 L1PA7 6471 - 2 312 117662 10 3 0 84 8 0 6 10 18 192 chain 405194 chr11 135006516 + 55142127 55146901 L1PA4 6152 + 1361 6152 9938 676 2 3 64 0 3 1058 1 0 44 2 1 476 1 2 659 3 4 78 0 10 406 3 5 269 1 0 4 0 1 1019 0 1 8 chain 518546 chr11 135006516 + 55160751 55166879 L1PA4 6152 - 9 6146 5324 50 0 1 53 5 9 217 0 1 556 4 0 1157 2 0 371 0 1 257 0 3 296 1 2 1932 0 1 903 0 3 324 chain 376936 chr11 135006516 + 55173677 55178720 L1PA8 5853 - 0 5035 10849 40 0 4 47 3 2 16 12 11 42 5 4 8 1 0 71 2 0 44 1 0 363 1 2 115 0 2 73 5 3 323 0 1 160 51 15 283 0 15 296 0 1 108 14 14 53 1 2 92 2 3 207 11 10 112 1 0 96 4 0 124 0 1 176 1 0 7 6 7 71 4 1 118 0 1 224 0 4 12 0 1 561 0 2 9 0 1 241 9 10 77 0 12 286 19 15 31 0 1 404 chain 53120 chr11 135006516 + 55187326 55188022 LTR30 714 - 17 714 56946 5 1 0 17 0 3 126 13 12 98 0 1 267 2 1 167 chain 32998 chr11 135006516 + 55189585 55190035 LTR2 463 - 0 453 79215 87 13 14 58 24 23 223 0 3 45 chain 13538 chr11 135006516 + 55197321 55197485 L1PA4 6152 + 5979 6143 146218 164 chain 75288 chr11 135006516 + 55198470 55199435 LTR5_Hs 974 + 0 974 45876 288 0 1 150 0 3 375 10 17 16 23 21 103 chain 12252 chr11 135006516 + 55203383 55203549 THE1A 353 - 0 164 151199 118 2 1 36 1 0 9 chain 76236 chr11 135006516 + 55205774 55206661 L1PA4 6152 + 5237 6143 45344 65 0 2 108 0 15 295 0 2 419 chain 128020 chr11 135006516 + 55207719 55209162 L1PA3long 6157 - 0 1445 28562 56 0 1 87 1 2 1299 chain 76298 chr11 135006516 + 55209162 55210019 L1PA3long 6157 + 3867 4726 45068 79 0 1 693 4 5 81 chain 10395 chr11 135006516 + 55218074 55218389 L1PB1 5432 - 19 318 158718 9 1 0 8 10 9 17 1 0 9 62 61 4 1 0 16 1 0 36 8 7 16 2 1 50 30 23 9 1 0 24 chain 17818 chr11 135006516 + 55220090 55220323 L1PA6 6164 - 2 242 133337 144 10 17 79 chain 534827 chr11 135006516 + 55227392 55233413 L1PA2 6032 + 2 6028 3613 254 1 0 34 21 22 2739 0 1 1524 0 1 185 0 1 185 0 2 306 2 1 472 0 1 136 5 0 7 0 5 150 chain 9263 chr11 135006516 + 55238555 55238666 THE1A 353 - 0 111 164247 111 chain 122287 chr11 135006516 + 55243908 55245261 L1PA3long 6157 - 0 1357 30283 266 1 5 1086 chain 33551 chr11 135006516 + 55251288 55252174 L1PB1 5432 - 22 727 78312 6 1 0 13 1 0 16 2 1 4 1 0 9 72 71 9 1 0 44 1 0 16 2 1 53 9 0 7 111 60 85 4 8 41 116 0 44 14 15 90 6 5 38 6 5 64 chain 52311 chr11 135006516 + 55263052 55263765 THE1C-int 1605 - 8 740 57421 169 1 0 207 23 22 5 0 1 19 1 2 18 1 2 223 0 18 46 chain 43537 chr11 135006516 + 55266067 55266565 L1PA4 6152 - 1 506 64756 148 0 7 350 chain 51492 chr11 135006516 + 55267344 55267922 L1PA4 6152 + 5422 6000 57972 578 chain 12244 chr11 135006516 + 55267923 55268067 L1PA4 6152 + 6002 6146 151232 144 chain 38126 chr11 135006516 + 55268077 55268542 LTR15 485 + 13 485 71947 61 0 1 4 0 1 125 0 5 275 chain 525286 chr11 135006516 + 55282721 55288699 L1PA3long 6157 - 13 6153 4659 740 3 4 515 0 4 92 0 7 7 6 0 5 0 1 218 0 3 125 0 14 1237 0 1 1747 0 1 519 8 136 53 0 7 554 0 1 149 chain 147784 chr11 135006516 + 55291417 55293458 L1PA8 5853 - 0 2027 24908 93 1 0 19 3 2 51 1 0 5 6 5 68 2 0 46 1 0 242 5 1 94 0 6 6 16 11 117 0 1 70 8 6 218 12 7 102 2 1 298 16 17 32 2 0 28 0 1 6 0 1 86 1 0 80 0 1 47 21 22 36 3 4 197 chain 156255 chr11 135006516 + 55293486 55295298 L1PA4 6152 - 1 1821 23825 119 0 2 634 5 8 34 0 2 967 0 1 53 chain 56746 chr11 135006516 + 55295298 55295933 L1PA4 6152 + 3724 4359 54521 635 chain 259188 chr11 135006516 + 55298867 55301746 L1PA2 6032 - 634 3516 15745 1341 0 1 917 1 0 51 0 1 43 0 1 78 0 1 448 chain 40956 chr11 135006516 + 55301746 55302193 L1PA2 6032 + 5500 5947 67970 447 chain 16720 chr11 135006516 + 55308399 55308629 MSTA-int 1630 - 1385 1628 136344 180 8 20 31 1 2 10 chain 31041 chr11 135006516 + 55319109 55319488 L1PA5 6144 - 4 383 82453 134 1 8 9 1 0 5 6 0 223 chain 17292 chr11 135006516 + 55319503 55319703 L1PA4 6152 - 8 208 134801 200 chain 12419 chr11 135006516 + 55323030 55323430 HERVH48-int 3304 + 2891 3245 150566 4 1 0 20 2 0 8 1 0 14 0 1 30 31 28 43 62 46 58 100 76 26 chain 61280 chr11 135006516 + 55334723 55335720 L1PA5 6144 - 6 715 52217 147 7 0 311 281 0 251 chain 24995 chr11 135006516 + 55335197 55335469 AluYa5 310 - 7 276 104823 5 3 0 264 chain 34855 chr11 135006516 + 55337762 55338269 LTR10C 591 + 0 591 76401 13 1 0 89 4 76 127 0 1 67 0 2 38 1 11 77 28 29 32 5 4 25 chain 531828 chr11 135006516 + 55344640 55350807 L1PA3long 6157 + 6 6149 3984 1048 0 1 1165 0 1 970 1 0 703 34 1 51 0 1 381 0 1 24 0 4 233 0 1 1165 0 1 392 chain 230634 chr11 135006516 + 55363047 55365729 L1PA4 6152 - 12 2698 17275 810 0 1 22 0 2 263 0 1 1587 chain 28390 chr11 135006516 + 55377565 55377872 AluYg6 310 - 3 310 91622 307 chain 5496 chr11 135006516 + 55382149 55382210 MER41B 635 - 93 154 190092 61 chain 19325 chr11 135006516 + 55385049 55385321 L1PA8 5853 + 5586 5853 129166 22 2 0 70 11 10 52 2 1 19 1 0 93 chain 347170 chr11 135006516 + 55386620 55390636 L1PA4 6152 - 9 4027 11688 129 0 7 3 7 0 24 0 1 801 2 1 478 0 1 495 0 1 263 0 1 1625 1 0 188 chain 12644 chr11 135006516 + 55391175 55391478 L1PA13 3608 - 125 418 149664 16 2 1 18 2 0 4 2 0 38 87 84 49 6 4 79 chain 544659 chr11 135006516 + 55453116 55459143 L1PA2 6032 + 0 6027 2115 6027 chain 74819 chr11 135006516 + 55464242 55465083 L1PA4 6152 - 230 1071 46105 841 chain 34296 chr11 135006516 + 55466746 55467136 L1PA3long 6157 - 951 1341 76812 390 chain 83883 chr11 135006516 + 55467136 55468071 L1PA3long 6157 + 5218 6157 41955 654 0 3 29 0 1 252 chain 51051 chr11 135006516 + 55472807 55473375 L1PA4 6152 - 9 576 58279 134 1 0 433 chain 8537 chr11 135006516 + 55473377 55473468 L1PA4 6152 + 5494 5585 168085 91 chain 523957 chr11 135006516 + 55514926 55521005 L1PA4 6152 + 11 6136 4771 145 10 17 854 0 1 144 0 1 423 0 35 1951 0 1 120 0 7 185 4 8 132 4 3 1856 1 0 4 0 1 80 10 1 156 chain 413500 chr11 135006516 + 55526414 55531150 L1PA4 6152 - 13 4751 9712 233 0 1 1830 1 0 807 0 2 94 1 2 302 0 1 363 1 0 192 1 0 4 0 1 518 12 11 377 chain 9665 chr11 135006516 + 55531150 55531265 L1PA4 6152 + 1277 1392 160155 115 chain 101132 chr11 135006516 + 55536248 55537506 L1PA7 6471 - 24 1289 36480 131 0 1 594 0 1 5 0 3 11 1 3 77 1 0 178 0 1 85 1 2 6 1 0 167 chain 35934 chr11 135006516 + 55537526 55537966 L1PA7 6471 + 4713 5153 74978 238 1 0 63 0 1 138 chain 26632 chr11 135006516 + 55571611 55571891 AluYb8 318 + 38 318 97552 280 chain 3148 chr11 135006516 + 55593106 55593143 MER20 218 - 140 177 221961 37 chain 12441 chr11 135006516 + 55600682 55600943 L1PB1 5432 + 5167 5404 150489 45 2 1 6 1 0 18 1 0 44 1 0 15 3 0 6 52 39 5 2 0 24 1 0 21 1 0 13 chain 37155 chr11 135006516 + 55601704 55602135 LTR3 431 + 0 431 73305 431 chain 118238 chr11 135006516 + 55609845 55611200 L1PA4 6152 - 1 1359 31715 64 0 2 81 1 3 623 1 0 585 chain 162959 chr11 135006516 + 55625189 55627589 MER61-int 3695 + 1 2223 22944 29 4 0 4 1 0 12 1 0 152 39 0 74 1 0 7 0 1 44 12 8 79 20 6 74 0 1 115 118 0 520 0 5 12 1 5 6 4 0 130 6 0 155 15 17 9 2 3 71 4 1 101 0 4 139 7 8 339 1 0 24 2 0 20 0 1 46 chain 30993 chr11 135006516 + 55660892 55661266 L1PA7 6471 - 2 378 82531 159 1 2 176 0 1 38 chain 96445 chr11 135006516 + 55664353 55665424 L1PA4 6152 - 952 2024 37694 339 0 1 732 chain 57657 chr11 135006516 + 55665424 55666062 L1PA4 6152 + 5180 5818 53964 638 chain 28289 chr11 135006516 + 55666063 55666395 L1PA4 6152 + 5818 6151 91984 182 2 3 148 chain 2487 chr11 135006516 + 55687627 55687656 MER52A 1651 + 890 919 233255 29 chain 78583 chr11 135006516 + 55691478 55692466 MER11B 1079 - 99 1079 44227 210 8 2 173 37 36 160 0 2 138 3 0 259 chain 14509 chr11 135006516 + 55713082 55713273 MER75 514 - 1 195 142862 15 1 2 168 0 2 7 chain 38852 chr11 135006516 + 55723827 55724415 MER61F 604 - 0 604 70945 70 1 0 72 10 6 69 18 15 14 1 0 13 7 8 129 15 28 29 1 12 139 chain 20971 chr11 135006516 + 55752028 55752310 AluY 311 + 0 282 124026 122 14 10 127 6 10 13 chain 520769 chr11 135006516 + 55753737 55759493 L1PA2 6032 + 242 6031 5075 15 1 0 751 0 8 1511 0 10 25 1 0 839 0 1 1342 0 1 776 0 17 351 7 0 120 4 9 13 chain 24165 chr11 135006516 + 55764016 55764350 THE1C 375 + 0 330 109401 129 3 1 52 17 15 133 chain 53737 chr11 135006516 + 55764860 55765459 L1PA4 6152 - 5 605 56510 149 1 2 449 chain 250534 chr11 135006516 + 55772959 55775783 L1PA3long 6157 - 0 2820 16210 149 0 1 108 8 9 212 2 0 1317 0 4 668 2 1 41 7 0 310 chain 5115 chr11 135006516 + 55775783 55775851 L1PA3long 6157 + 3236 3310 193149 22 1 7 45 chain 32961 chr11 135006516 + 55791002 55791387 L1PA5 6144 + 5744 6129 79272 385 chain 5590 chr11 135006516 + 55792510 55792581 MER77 626 - 30 100 189170 4 1 0 66 chain 6876 chr11 135006516 + 55799284 55799378 MER85 139 + 15 136 178390 23 0 17 36 0 10 35 chain 310587 chr11 135006516 + 55800303 55804429 L1P3 4156 + 0 4139 12982 251 2 0 68 2 1 85 1 2 575 0 1 152 0 11 82 0 10 37 13 21 85 3 4 85 25 12 104 10 11 443 9 1 178 0 1 126 21 23 148 0 2 53 0 1 56 35 10 38 0 1 29 0 1 185 0 3 197 0 4 329 2 3 416 0 12 70 2 0 5 0 2 104 0 1 17 0 1 55 2 1 26 chain 412400 chr11 135006516 + 55807264 55812764 HERVL-int 5654 + 0 5523 9737 93 5 6 114 11 6 281 5 6 88 0 1 44 11 13 25 0 1 4 1 0 35 1 8 100 8 9 5 1 0 207 8 9 71 3 2 315 0 1 243 10 8 5 0 2 367 0 5 108 4 9 62 2 0 184 0 1 92 0 1 88 0 1 308 0 12 23 15 16 179 0 1 17 0 1 361 15 12 56 0 1 129 13 14 368 0 1 62 0 10 222 0 7 616 3 0 5 8 11 173 38 8 175 0 1 25 0 1 88 chain 34332 chr11 135006516 + 55813905 55814312 L1PA7 6471 - 209 617 77164 256 1 0 112 1 3 37 chain 16659 chr11 135006516 + 55814312 55814527 L1PA7 6471 + 6261 6465 136512 193 11 0 11 chain 51092 chr11 135006516 + 55823593 55824223 LTR6A 649 - 28 649 58259 189 1 0 109 4 0 294 4 0 29 chain 90572 chr11 135006516 + 55824842 55827361 L1PA7 6471 + 5340 6470 39444 282 974 0 46 0 2 30 0 2 564 418 0 200 1 0 4 chain 81888 chr11 135006516 + 55825136 55826098 LTR5_Hs 974 + 4 974 42811 43 0 3 94 8 9 305 0 4 449 1 0 50 1 2 11 chain 30930 chr11 135006516 + 55826757 55827156 LTR7 482 - 12 482 82631 162 0 1 10 0 31 41 0 1 109 8 46 69 chain 28815 chr11 135006516 + 55835142 55835609 L1PA8 5853 - 0 464 89824 37 5 1 21 2 1 33 1 0 16 50 56 9 1 0 25 0 1 44 2 0 49 1 0 171 chain 229085 chr11 135006516 + 55843926 55847048 L1PA10 4194 - 94 3206 17354 26 5 0 109 6 0 176 0 1 112 22 16 219 0 3 313 3 0 314 0 6 56 1 0 4 1 2 75 8 6 13 1 2 35 6 4 43 1 0 4 1 2 349 0 1 16 0 3 147 0 2 118 20 20 82 4 3 17 1 3 38 1 0 223 1 0 144 6 5 185 2 1 214 chain 6475 chr11 135006516 + 55863832 55863906 L1PA3long 6157 + 6083 6157 181434 74 chain 117515 chr11 135006516 + 55868616 55869974 L1PA5 6144 + 4783 6144 31960 511 1 0 137 0 3 376 1 2 169 6 6 157 chain 94176 chr11 135006516 + 55910997 55912036 SVA_D 2077 + 450 2064 38307 237 0 40 151 0 535 651 chain 42311 chr11 135006516 + 55919840 55920315 HERV-Fc1_LTR3 475 + 0 475 66255 475 chain 30963 chr11 135006516 + 55925156 55925573 LTR3B 427 - 4 418 82576 24 0 3 49 1 0 4 16 11 323 chain 15057 chr11 135006516 + 55930184 55930373 L1PA7 6471 + 6270 6467 141150 19 0 7 19 0 1 151 chain 90518 chr11 135006516 + 55968269 55969346 L1PA5 6144 - 6 1090 39468 505 1 9 330 1 0 240 chain 219677 chr11 135006516 + 55983645 55986479 L1PA7 6471 - 1 3228 17905 149 38 0 10 5 35 459 4 6 49 1 0 60 0 2 57 3 4 7 0 6 11 0 1 42 3 387 507 0 4 21 0 1 4 1 0 97 2 0 56 1 2 429 0 1 58 1 2 21 0 4 140 12 9 586 chain 33928 chr11 135006516 + 55986481 55986881 L1PA7 6471 + 2832 3242 77732 232 0 10 168 chain 529815 chr11 135006516 + 55986941 55993102 L1PA4 6152 + 0 6151 4210 581 0 3 6 4 1 443 7 6 13 1 3 442 8 12 399 1 0 1249 0 11 13 13 0 1151 9 17 434 22 0 341 0 1 607 0 1 417 chain 7462 chr11 135006516 + 55999377 55999500 MER21A 919 - 756 900 174391 7 1 0 27 3 22 16 7 10 62 chain 41895 chr11 135006516 + 56024491 56024997 L1PA7 6471 + 5951 6457 66762 186 1 0 283 3 4 33 chain 38649 chr11 135006516 + 56034288 56034809 L1PA11 4918 + 3821 4357 71227 231 0 17 8 5 6 148 0 1 38 0 1 43 0 1 5 1 0 8 5 0 29 chain 3999 chr11 135006516 + 56037488 56037535 L1PB1 5432 - 457 504 207394 47 chain 23933 chr11 135006516 + 56042604 56042900 L1PA7 6471 - 13 309 110729 296 chain 79243 chr11 135006516 + 56044581 56045588 LTR13 1007 + 0 1007 43934 73 2 0 308 4 5 242 2 1 54 25 28 264 2 1 31 chain 169432 chr11 135006516 + 56046405 56048982 MER57-int 2662 + 126 2624 22128 58 0 1 48 5 7 71 2 0 70 4 0 4 4 0 367 0 1 66 2 0 265 12 7 173 3 0 80 1 0 60 3 0 251 16 20 27 2 0 139 17 0 64 9 5 6 0 12 44 0 4 92 2 8 212 1 0 4 38 42 90 24 18 51 1 0 11 107 55 24 1 0 6 18 13 22 chain 12122 chr11 135006516 + 56049568 56049872 MER4B 649 + 0 366 151722 21 20 9 17 1 0 7 85 116 23 5 28 30 0 5 88 0 15 7 chain 53219 chr11 135006516 + 56050160 56050927 MER4E1 777 - 9 777 56877 128 1 0 88 20 19 243 8 7 38 3 6 20 0 1 129 10 9 59 5 6 15 chain 18252 chr11 135006516 + 56052677 56053089 L1PB1 5432 + 5062 5422 132196 28 39 18 6 1 0 24 1 0 9 1 0 6 12 8 7 2 0 52 2 1 15 1 0 39 6 5 16 25 13 18 1 0 5 1 0 12 2 0 26 1 0 14 8 7 13 1 0 18 chain 9354 chr11 135006516 + 56080868 56080977 L1PA4 6152 - 9 118 163781 109 chain 8013 chr11 135006516 + 56090619 56090762 THE1D 372 + 0 144 170977 91 32 33 20 chain 27504 chr11 135006516 + 56095320 56095660 LTR14A 344 - 1 344 94641 108 4 3 65 6 10 157 chain 5049 chr11 135006516 + 56098331 56098394 HERVK14-int 1672 - 7 69 194648 6 1 0 56 chain 8842 chr11 135006516 + 56100007 56100134 HERVK14-int 1672 - 1516 1638 166425 24 3 0 44 2 1 46 1 0 7 chain 26721 chr11 135006516 + 56100363 56100701 LTR14A 344 - 0 342 97258 177 10 14 151 chain 50924 chr11 135006516 + 56162775 56163416 L1PA8 5853 - 175 814 58356 70 2 0 20 0 1 23 1 0 49 1 0 41 0 1 434 chain 114705 chr11 135006516 + 56168574 56169960 LTR12C 1709 - 9 1709 32881 159 0 102 211 0 4 65 0 47 85 0 41 149 1 0 31 0 120 288 0 1 397 chain 21973 chr11 135006516 + 56195559 56195817 L1PA5 6144 + 5887 6144 120342 113 1 0 144 chain 92615 chr11 135006516 + 56196018 56197286 HSMAR1 1287 + 1 1284 38780 123 2 1 76 9 8 106 14 16 176 0 1 49 5 3 28 9 17 49 16 21 358 0 3 248 chain 54529 chr11 135006516 + 56218452 56219050 L1PA3long 6157 - 0 598 56014 598 chain 14440 chr11 135006516 + 56259671 56259839 AluY 311 + 143 311 143077 168 chain 121010 chr11 135006516 + 56264007 56265567 SVA_B 1603 + 7 1580 30691 15 3 1 19 18 5 160 0 7 220 0 116 197 40 0 87 40 0 18 1 0 12 1 0 15 4 0 42 4 0 37 8 4 14 1 0 10 10 5 6 0 5 578 chain 80111 chr11 135006516 + 56270055 56271182 LTR5B 1012 - 0 1012 43539 152 0 6 50 2 1 31 0 3 13 1 2 414 105 0 90 1 0 106 15 1 40 0 2 26 6 0 75 chain 157355 chr11 135006516 + 56274279 56276203 L1PA7 6471 - 10 1946 23682 209 0 1 22 3 0 245 0 1 22 1 0 216 2 0 124 1 0 41 0 18 354 5 4 679 chain 60124 chr11 135006516 + 56276203 56276958 L1PA7 6471 + 3752 4508 52726 484 14 11 224 9 13 24 chain 20343 chr11 135006516 + 56304548 56305039 MLT2A2 560 - 0 560 126091 6 0 4 30 12 0 14 52 26 67 42 151 30 70 68 149 5 1 14 chain 534259 chr11 135006516 + 56316525 56322526 L1PA3long 6157 - 1 6157 3682 200 0 1 136 0 1 516 0 2 975 0 1 627 0 1 263 0 1 51 1 0 1174 2 0 885 0 1 156 0 3 253 0 128 102 0 15 335 4 7 169 0 1 152 chain 22398 chr11 135006516 + 56333711 56334121 L1PA14 3548 - 90 476 118494 44 1 0 16 1 0 5 1 0 14 9 2 36 39 34 77 1 0 9 1 0 59 1 0 7 0 1 17 1 0 6 2 0 13 8 4 42 chain 16787 chr11 135006516 + 56334819 56335021 L1PA7 6471 - 6 208 136141 202 chain 21907 chr11 135006516 + 56347833 56348081 L1PA4 6152 + 5615 5863 120596 248 chain 25074 chr11 135006516 + 56348095 56348380 L1PA4 6152 + 5867 6152 104438 285 chain 539321 chr11 135006516 + 56354144 56360154 L1PA3long 6157 - 2 6147 2925 2722 0 1 2523 0 128 166 0 4 36 0 1 421 0 1 142 chain 12689 chr11 135006516 + 56367265 56367618 L1PB1 5432 - 5 326 149491 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 22 87 71 40 1 0 14 22 21 35 2 0 5 8 4 12 1 0 8 1 0 24 1 0 8 chain 83826 chr11 135006516 + 56385793 56386787 LTR5B 1012 - 0 1012 41974 524 1 0 139 0 1 211 0 14 111 0 4 8 chain 16217 chr11 135006516 + 56388286 56388485 L1PA7 6471 + 6264 6462 137702 194 1 0 4 chain 29248 chr11 135006516 + 56407953 56408257 AluYa5 310 - 6 310 87803 304 chain 23431 chr11 135006516 + 56417199 56417545 L1PA8 5853 + 5502 5853 113473 24 0 8 28 1 0 38 6 8 71 1 0 15 2 1 45 2 1 16 5 4 92 chain 330523 chr11 135006516 + 56422506 56426292 L1PA4 6152 - 0 3809 12183 6 0 7 1039 0 1 136 0 3 526 0 1 77 0 10 406 1 2 12 0 3 70 2 1 170 3 0 233 0 1 1105 chain 36636 chr11 135006516 + 56442926 56443358 L1PA7 6471 - 27 459 74048 432 chain 97547 chr11 135006516 + 56450977 56452085 L1PA5 6144 + 5027 6134 37407 828 1 0 279 chain 48204 chr11 135006516 + 56453248 56454035 L1PB1 5432 + 4680 5414 60312 114 0 8 20 11 12 262 42 10 8 1 0 20 1 0 10 1 0 12 2 0 3 2 0 9 2 0 52 2 1 15 1 0 43 2 1 11 31 21 15 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 10 chain 375358 chr11 135006516 + 56476890 56481397 L1PA6 6164 - 3 4551 10904 8 4 0 226 0 1 198 0 4 320 0 1 359 0 1 72 2 0 788 1 2 120 0 31 17 0 2 136 0 1 209 5 6 474 1 0 297 0 1 198 0 1 39 11 10 305 5 0 25 0 1 212 5 6 132 1 2 221 0 1 14 0 1 14 0 4 88 chain 36371 chr11 135006516 + 56484461 56484864 L1PA3long 6157 - 749 1152 74037 403 chain 69449 chr11 135006516 + 56484864 56485618 L1PA3long 6157 + 5404 6157 48633 32 1 0 721 chain 86034 chr11 135006516 + 56486133 56487157 LTR5B 1012 + 0 1012 41142 150 14 0 282 0 1 409 1 0 161 0 2 7 chain 3363 chr11 135006516 + 56489399 56489439 MLT2B3 573 + 533 573 217799 40 chain 298820 chr11 135006516 + 56492230 56495530 L1PA2 6032 - 2 3308 13489 139 0 7 705 1 0 2129 2 1 183 0 1 141 chain 3700 chr11 135006516 + 56503070 56503114 MER65A 464 - 0 44 211938 44 chain 31379 chr11 135006516 + 56505695 56506113 L1PA8 5853 - 0 409 81853 46 2 0 47 1 0 19 2 1 43 1 0 18 2 1 70 2 0 44 1 0 120 chain 141956 chr11 135006516 + 56526186 56527740 L1PA2 6032 - 501 2056 25832 1338 0 1 216 chain 47055 chr11 135006516 + 56527746 56528257 L1PA2 6032 + 5519 6030 61159 511 chain 18548 chr11 135006516 + 56549976 56550205 L1P3 4156 + 3 232 131360 229 chain 113238 chr11 135006516 + 56556354 56557621 L1PA4 6152 - 0 1269 33302 254 0 1 19 2 3 992 chain 71907 chr11 135006516 + 56560683 56561494 L1PA5 6144 - 7 818 47520 811 chain 34266 chr11 135006516 + 56561494 56561871 L1PA5 6144 + 4888 5265 76993 377 chain 16751 chr11 135006516 + 56563020 56563358 L1PB1 5432 + 5114 5416 136250 24 1 0 5 4 3 12 5 1 8 2 0 53 3 1 15 1 0 39 6 5 16 3 0 6 17 6 19 3 1 4 1 0 14 2 0 23 3 0 22 1 0 13 1 0 12 chain 73660 chr11 135006516 + 56573949 56574765 L1PA4 6152 + 5328 6143 46704 570 2 0 211 0 1 33 chain 3995 chr11 135006516 + 56578513 56578558 U2 167 + 6 51 207446 45 chain 39391 chr11 135006516 + 56585131 56585679 LTR19B 566 + 0 566 70181 83 0 1 6 1 0 28 1 0 98 1 0 6 0 15 213 7 6 40 2 4 9 4 8 49 chain 75879 chr11 135006516 + 56588553 56589380 L1PA4 6152 + 5324 6151 45560 827 chain 59842 chr11 135006516 + 56594573 56595656 MER11A 1151 - 0 1151 52906 39 1 0 27 1 0 26 0 1 44 31 31 41 1 2 47 80 118 28 0 4 37 3 4 11 23 26 45 1 0 78 0 12 14 31 47 66 0 1 40 20 11 47 18 15 61 1 0 28 1 0 101 12 20 79 chain 38910 chr11 135006516 + 56603454 56603904 L1PA4 6152 - 15 477 70854 127 0 12 323 chain 25437 chr11 135006516 + 56613196 56613804 LTR12C 1709 + 873 1648 102516 236 1 48 38 212 303 38 5 4 26 29 59 23 chain 147166 chr11 135006516 + 56637226 56639610 MER4-int 2692 + 650 2692 25008 64 6 4 138 3 0 63 0 1 280 0 5 83 0 1 21 1 0 9 7 7 86 1 0 12 1 0 53 329 1 20 16 10 125 3 5 226 0 1 143 3 0 271 19 3 101 0 3 15 0 7 69 1 0 1 2 0 28 0 11 7 19 9 147 0 1 11 chain 14563 chr11 135006516 + 56675233 56675407 L1PA6 6164 - 19 193 142696 174 chain 6042 chr11 135006516 + 56677475 56677621 MER33 330 - 151 301 184873 50 1 0 12 57 62 26 chain 86868 chr11 135006516 + 56679387 56680325 L1PA2 6032 - 1324 2264 40797 345 0 2 593 chain 121932 chr11 135006516 + 56680325 56681658 L1PA2 6032 + 4692 6032 30402 1192 0 7 141 chain 17624 chr11 135006516 + 56684952 56685158 L1PA4 6152 - 3 215 133921 79 0 6 127 chain 198274 chr11 135006516 + 56686724 56689226 L1PA7 6471 + 3967 6467 19335 155 4 16 72 0 2 193 0 6 37 1 0 18 0 4 10 0 6 482 0 12 88 19 6 294 25 0 253 1 0 89 8 6 582 1 0 5 7 8 148 2 0 8 chain 22851 chr11 135006516 + 56692796 56693086 THE1A-int 1579 - 1287 1579 116339 274 1 3 15 chain 29177 chr11 135006516 + 56693086 56693439 THE1A 353 - 0 353 88160 243 1 0 54 0 1 55 chain 50533 chr11 135006516 + 56703049 56703603 L1PA3long 6157 - 11 565 58631 554 chain 36249 chr11 135006516 + 56705140 56705531 L1PA2 6032 - 7 399 74561 155 0 1 236 chain 7552 chr11 135006516 + 56705531 56705614 L1P1 4361 + 3124 3207 173845 83 chain 514262 chr11 135006516 + 56706546 56713639 L1PA4 6152 - 10 6146 5750 103 0 1 2808 0 4 386 1091 0 742 0 8 1192 0 128 63 7 0 131 1 0 20 0 1 231 10 9 181 0 1 127 chain 97851 chr11 135006516 + 56709853 56710934 L1PA2 6032 - 0 1080 37319 269 1 0 811 chain 201905 chr11 135006516 + 56713646 56715997 L1P1 4361 - 1527 3881 19075 173 0 5 7 5 0 403 0 1 596 4 7 562 1 0 600 chain 8326 chr11 135006516 + 56716185 56716276 L1P1 4361 - 1928 2019 169240 91 chain 28078 chr11 135006516 + 56720555 56720867 AluYb8 318 + 6 315 92722 117 3 0 192 chain 26969 chr11 135006516 + 56722204 56722560 THE1B 368 - 0 368 96372 170 2 0 25 2 1 113 0 15 44 chain 176446 chr11 135006516 + 56731866 56733801 L1PA2 6032 + 4094 6029 21309 1935 chain 41708 chr11 135006516 + 56733801 56734370 L1PA11 4918 - 3403 3975 66926 106 16 17 6 1 0 4 0 1 127 17 19 292 chain 48446 chr11 135006516 + 56752135 56752788 MER61-int 3695 - 0 664 60152 104 16 24 205 10 11 98 0 2 93 0 1 5 2 1 120 chain 70433 chr11 135006516 + 56778776 56779554 L1PA3long 6157 - 0 778 48197 778 chain 30807 chr11 135006516 + 56812906 56813290 L1PA7 6471 - 2 395 82851 91 6 14 225 0 1 62 chain 112778 chr11 135006516 + 56813295 56814741 L1PA7 6471 + 4998 6455 33451 42 19 2 16 4 0 138 0 1 287 0 17 92 6 10 18 2 0 88 0 1 47 0 1 67 0 1 17 7 10 405 0 1 137 4 10 32 1 0 17 chain 8379 chr11 135006516 + 56825885 56825987 MER54B 801 + 639 741 168973 102 chain 38820 chr11 135006516 + 56827390 56827840 L1PA5 6144 - 13 464 70990 347 0 1 103 chain 115684 chr11 135006516 + 56828629 56830213 L1PA15 4387 + 2212 3810 32563 187 3 0 17 1 3 22 0 1 28 0 1 30 50 51 8 0 5 357 0 1 139 0 4 71 2 1 114 8 7 149 1 0 311 0 5 86 chain 531691 chr11 135006516 + 56830234 56836383 L1PA5 6144 + 0 6132 3999 710 2 1 65 6 5 251 0 1 716 0 1 8 23 8 138 0 2 287 0 2 1571 5 0 708 5 0 823 1 5 830 chain 22432 chr11 135006516 + 56860206 56860493 AluSp 311 - 18 300 118329 9 4 0 19 0 2 66 4 1 185 chain 21487 chr11 135006516 + 56880078 56880402 Tigger2 2703 + 2286 2623 122194 51 7 13 16 7 10 68 0 2 122 16 18 37 chain 27897 chr11 135006516 + 56882833 56883212 THE1C 375 + 0 375 93381 125 3 0 56 0 1 8 10 8 177 chain 7426 chr11 135006516 + 56888451 56888563 MER21C 908 + 1 207 174609 33 13 107 66 chain 5883 chr11 135006516 + 56899846 56899912 Tigger1 2417 - 290 356 186351 66 chain 9375 chr11 135006516 + 56933385 56933531 THE1B 368 - 218 368 163687 78 19 25 33 2 0 14 chain 27529 chr11 135006516 + 56936120 56936484 THE1A 353 - 0 353 94579 242 1 0 21 3 0 5 8 1 84 chain 125115 chr11 135006516 + 56936491 56938341 THE1A-int 1579 - 7 1579 29355 311 0 1 568 0 2 72 6 5 106 0 3 58 26 27 44 284 0 375 chain 11390 chr11 135006516 + 56938341 56938478 THE1A 353 - 0 137 154746 137 chain 4533 chr11 135006516 + 56958214 56958283 MADE1 96 - 1 86 200424 40 6 22 23 chain 3002 chr11 135006516 + 56977888 56977923 MER3 215 - 126 161 224987 35 chain 7633 chr11 135006516 + 56979021 56979111 Tigger2 2703 + 2289 2380 173339 82 0 1 8 chain 11595 chr11 135006516 + 56979162 56979318 MER30 238 - 39 208 153913 75 4 17 77 chain 15804 chr11 135006516 + 56985902 56986241 L1PB1 5432 + 5114 5422 138944 20 1 0 8 3 2 14 16 10 52 2 1 15 1 0 44 1 0 16 1 0 6 16 6 18 23 18 26 1 0 15 7 6 13 1 0 14 1 0 4 chain 54852 chr11 135006516 + 56993523 56994599 L1PB1 5432 + 4586 5427 55800 35 3 0 93 1 0 90 1 2 297 1 2 9 198 0 22 2 0 10 1 0 10 23 17 45 1 0 19 1 0 37 37 23 30 7 4 14 3 1 24 1 0 21 6 5 8 1 0 18 2 0 5 chain 34868 chr11 135006516 + 57015312 57015756 L1PA8 5853 + 5410 5847 76385 152 1 0 46 2 0 70 2 1 7 1 0 50 8 7 17 1 0 87 chain 23243 chr11 135006516 + 57029782 57030499 MER51B 395 + 44 395 114476 15 8 11 69 366 0 48 1 0 42 6 5 19 5 4 138 chain 29240 chr11 135006516 + 57034215 57034711 MER57-int 2662 + 40 775 87847 30 45 29 9 1 0 34 1 0 15 17 20 48 0 243 19 7 17 211 10 11 49 chain 29589 chr11 135006516 + 57035310 57035692 MER51B 395 + 9 388 86240 177 1 0 42 2 1 154 1 0 5 chain 5080 chr11 135006516 + 57049161 57049222 MSTB 430 + 91 152 194289 61 chain 86264 chr11 135006516 + 57049269 57050303 MER11C 1089 - 26 1089 41053 286 1 2 37 0 1 45 0 4 371 1 5 62 0 1 98 0 6 98 0 12 35 chain 22399 chr11 135006516 + 57104929 57105201 L1PA5 6144 + 5770 6040 118486 201 2 0 69 chain 7615 chr11 135006516 + 57105212 57105307 L1PA5 6144 + 6040 6135 173442 95 chain 2476 chr11 135006516 + 57110984 57111024 MIR 256 + 85 126 233343 11 4 5 25 chain 27928 chr11 135006516 + 57178177 57178535 THE1A 353 + 0 353 93247 88 4 1 21 1 0 92 1 0 151 chain 10607 chr11 135006516 + 57211749 57211877 MER57F 435 + 142 270 157798 128 chain 2881 chr11 135006516 + 57242924 57242961 MIRb 242 - 106 145 227347 25 0 2 12 chain 3859 chr11 135006516 + 57248514 57248561 MIRb 242 + 60 105 209463 5 2 0 40 chain 2947 chr11 135006516 + 57258543 57258574 MIRb 242 + 104 135 226154 31 chain 22668 chr11 135006516 + 57262322 57262600 AluSp 311 - 14 291 117228 27 4 3 247 chain 3635 chr11 135006516 + 57262620 57262660 MADE1 96 + 49 89 213049 40 chain 18815 chr11 135006516 + 57286997 57287262 L1PA8A 6298 + 6030 6290 130636 120 0 2 22 15 1 10 1 8 97 chain 41484 chr11 135006516 + 57331412 57331993 L1M1 2793 + 1284 1855 67300 229 12 11 75 0 1 54 9 2 144 2 1 19 12 10 25 chain 23230 chr11 135006516 + 57332437 57332710 AluSp 311 + 0 277 114542 19 0 4 254 chain 3651 chr11 135006516 + 57353975 57354015 THE1-int 844 + 530 570 212788 40 chain 21183 chr11 135006516 + 57357327 57357703 THE1D 372 - 0 372 123265 148 6 5 19 29 34 80 41 33 42 1 0 4 0 1 6 chain 15323 chr11 135006516 + 57393591 57393779 MER51B 395 - 204 393 140418 92 2 3 94 chain 65698 chr11 135006516 + 57418101 57418925 HERVL-int 5654 + 4822 5654 50249 174 0 12 56 0 2 159 8 7 98 2 1 104 4 0 219 chain 18455 chr11 135006516 + 57420893 57421105 L1PA4 6152 + 5942 6151 131629 173 3 0 36 chain 19896 chr11 135006516 + 57436929 57437217 AluSz6 309 - 15 296 127499 7 4 0 48 2 1 83 26 24 118 chain 23589 chr11 135006516 + 57445792 57446062 AluY 311 + 32 302 112635 270 chain 30329 chr11 135006516 + 57458109 57458471 L1PA5 6144 + 5773 6135 83845 362 chain 173909 chr11 135006516 + 57483055 57485211 SVA_D 2077 - 0 2077 21602 661 58 23 4 0 1 80 0 1 8 10 37 4 0 1 168 0 3 31 1 2 5 1 0 10 0 2 81 101 12 26 3 1 8 3 0 869 0 17 12 1 0 6 1 0 4 chain 4341 chr11 135006516 + 57483716 57483774 SVA_D 2077 - 710 861 112304 27 2 0 14 3 98 12 chain 5056 chr11 135006516 + 57484190 57484278 SVA_D 2077 - 859 947 81393 88 chain 52053 chr11 135006516 + 57494917 57495641 MER4E 760 + 0 748 57591 17 1 0 93 11 7 31 0 10 8 17 10 110 1 5 78 0 2 8 0 4 139 0 9 86 1 8 123 chain 13622 chr11 135006516 + 57498956 57499122 MER4E 760 + 590 760 145892 43 0 4 123 chain 13071 chr11 135006516 + 57503725 57503925 MER30 238 - 11 234 147948 34 0 3 33 1 0 34 2 0 5 2 18 69 9 16 11 chain 24510 chr11 135006516 + 57537515 57537828 AluSx1 309 + 0 309 107495 15 8 5 30 1 0 259 chain 14590 chr11 135006516 + 57557048 57557261 MER30 238 - 5 238 142628 63 6 12 26 7 21 111 chain 23931 chr11 135006516 + 57565542 57565844 AluSc8 310 + 4 309 110745 127 0 4 142 0 2 23 3 0 7 chain 36747 chr11 135006516 + 57605853 57606294 L1PA4 6152 - 1 456 73880 70 0 14 54 1 8 8 2 1 5 6 0 295 chain 526703 chr11 135006516 + 57615329 57621464 L1PA6 6164 + 0 6162 4527 398 6 5 393 1 18 640 13 13 866 0 1 337 3 4 855 2 1 1112 0 1 106 0 1 7 0 1 41 1 0 284 0 1 172 0 3 571 0 1 254 0 3 73 chain 21055 chr11 135006516 + 57627816 57628167 L1MA5A 2387 + 1977 2296 123711 51 0 1 4 1 0 36 2 1 38 1 0 50 2 0 23 1 0 38 3 0 13 33 9 55 chain 27316 chr11 135006516 + 57631371 57631676 AluYk4 311 - 6 311 95221 305 chain 9945 chr11 135006516 + 57645766 57645935 MSTA 426 + 0 194 160856 21 1 2 77 24 48 46 chain 19748 chr11 135006516 + 57651698 57652362 THE1D 372 + 0 372 127964 15 1 3 14 1 0 24 47 46 37 299 7 32 0 20 9 19 1 17 1 0 79 1 0 68 chain 21408 chr11 135006516 + 57657641 57658320 L1MA6 2487 - 107 560 122481 40 252 50 14 2 0 44 21 5 158 3 0 21 86 83 38 chain 22901 chr11 135006516 + 57665929 57666291 THE1D 372 + 0 372 116103 101 8 7 49 34 40 113 1 3 20 4 7 32 chain 16714 chr11 135006516 + 57672233 57672477 MER41A 554 - 0 244 136362 12 2 0 25 18 19 89 3 4 95 chain 169900 chr11 135006516 + 57675754 57677754 L1PA7 6471 - 1 2017 22061 267 0 4 489 0 1 92 0 3 347 0 1 592 0 8 45 1 0 167 chain 42808 chr11 135006516 + 57678648 57679198 MER41A 554 - 6 554 65645 132 8 7 244 1 0 165 chain 17079 chr11 135006516 + 57690388 57690582 L1PA5 6144 + 5938 6132 135379 194 chain 30252 chr11 135006516 + 57693235 57693611 L1PB1 5432 - 334 719 84060 225 0 5 61 2 3 83 0 3 5 chain 128771 chr11 135006516 + 57710663 57712104 SVA_B 1603 - 0 1551 28372 612 0 41 16 0 82 782 14 1 17 chain 528229 chr11 135006516 + 57715031 57721462 L1PA7 6471 - 9 6468 4379 164 1 2 375 0 1 285 0 1 15 1 0 403 5 0 25 0 1 67 0 1 102 2 1 67 4 0 121 0 1 155 0 4 23 0 1 259 0 15 38 0 2 309 0 1 27 3 0 448 0 4 428 0 1 470 5 4 640 0 1 88 0 1 14 0 3 120 5 4 6 0 1 50 0 1 21 3 0 257 8 9 51 2 1 725 0 5 445 3 4 191 chain 9978 chr11 135006516 + 57738207 57738400 THE1B 368 + 152 342 160690 25 22 18 5 1 0 10 0 4 10 22 20 98 chain 19778 chr11 135006516 + 57752779 57753030 AluY 311 + 50 302 127877 73 7 8 171 chain 445402 chr11 135006516 + 57753969 57760000 L1PA8 5853 - 0 5803 8889 93 1 0 19 2 1 35 10 5 7 0 6 8 4 3 68 2 0 6 0 1 5 1 0 34 2 1 473 0 1 78 2 0 3 2 0 187 0 1 73 0 1 93 1 0 4 0 1 344 7 49 46 0 4 143 0 4 36 0 1 244 0 15 52 0 1 471 0 4 54 0 1 166 12 15 114 2 0 450 5 8 159 9 10 384 1 0 136 1 0 196 311 0 21 0 1 57 0 1 179 5 49 47 0 3 50 3 0 5 3 6 99 0 2 328 0 1 381 0 4 202 49 10 11 1 0 11 2 0 21 chain 551928 chr11 135006516 + 57761634 57767659 L1PA2 6032 - 1 6032 1201 990 0 1 1984 0 1 818 0 2 155 0 2 957 1 0 98 0 2 764 1 0 257 chain 143501 chr11 135006516 + 57777327 57778904 L1PA3long 6157 - 8 1586 25561 245 0 1 669 0 1 4 1 0 658 chain 12079 chr11 135006516 + 57810438 57810578 L1P1 4361 - 38 177 151872 18 1 0 121 chain 268472 chr11 135006516 + 57816171 57819079 L1PA2 6032 + 3115 6028 15263 13 0 4 2484 0 5 400 4 0 7 chain 52031 chr11 135006516 + 57819103 57819668 L1PA2 6032 + 5051 5616 57603 565 chain 37443 chr11 135006516 + 57819668 57820068 L1PA2 6032 + 5621 6021 72897 400 chain 87961 chr11 135006516 + 57820103 57821083 L1PA3long 6157 + 5179 6157 40390 523 1 2 448 3 0 5 chain 135643 chr11 135006516 + 57841120 57842832 L1PA8 5853 - 0 1750 26904 92 2 1 19 7 6 42 7 6 8 1 0 71 2 0 43 2 1 125 24 7 154 0 61 172 0 2 303 2 1 44 0 1 360 1 0 231 chain 80429 chr11 135006516 + 57848304 57849269 L1PA6 6164 - 10 977 43414 16 18 20 931 chain 67843 chr11 135006516 + 57849452 57850213 L1PA3long 6157 + 5365 6142 49310 303 0 16 458 chain 40566 chr11 135006516 + 57850269 57850762 L1PA3long 6157 - 0 1280 68486 183 1 784 194 0 4 115 chain 23210 chr11 135006516 + 57852215 57852516 L1P4 1494 + 91 390 114639 33 2 1 20 1 0 245 chain 331244 chr11 135006516 + 57855033 57859775 L1PA8 5853 - 0 4165 12155 91 1 0 21 2 1 52 1 0 9 1 0 69 2 0 27 0 4 15 1 0 28 260 0 526 2 0 4 1 0 163 8 0 30 313 0 16 2 1 220 1 0 37 6 0 69 0 1 135 1 0 174 7 10 87 0 4 404 0 1 11 0 1 264 0 3 402 0 2 56 4 1 636 0 4 77 0 1 44 2 0 13 0 1 112 4 0 268 1 9 19 6 5 37 chain 48553 chr11 135006516 + 57874587 57875193 L1PA6 6164 - 2 607 60074 8 2 0 137 2 1 5 0 1 70 1 2 381 chain 11041 chr11 135006516 + 57897402 57897551 L1PA8 5853 - 0 147 156050 93 1 0 19 2 1 34 chain 212681 chr11 135006516 + 57906765 57909126 L1PA4 6152 - 9 2437 18310 722 2 0 1114 0 69 523 chain 30198 chr11 135006516 + 57911502 57911836 L1PA4 6152 - 1 335 84197 334 chain 6287 chr11 135006516 + 57928450 57928526 L1P1 4361 - 187 262 182903 26 1 0 49 chain 7699 chr11 135006516 + 57928526 57928629 L1PA6 6164 + 5965 6068 172941 32 1 0 6 1 2 63 chain 8228 chr11 135006516 + 57928629 57928722 L1PA6 6164 + 6069 6162 169789 93 chain 13612 chr11 135006516 + 57940157 57940377 L1MA3 4352 - 8 218 145926 14 6 2 14 1 0 26 1 0 5 2 1 24 2 0 79 1 0 45 chain 30236 chr11 135006516 + 57962840 57963156 AluYb9 318 - 1 317 84095 316 chain 5710 chr11 135006516 + 57983410 57983633 L1MA4 2864 + 2659 2834 188007 16 3 0 6 72 43 14 12 6 23 2 0 42 16 8 17 chain 18728 chr11 135006516 + 57992888 57993255 THE1D 372 - 0 372 130886 14 19 18 94 65 68 6 0 4 101 14 13 54 chain 24725 chr11 135006516 + 57993996 57994297 AluSc5 308 - 3 304 106294 301 chain 27151 chr11 135006516 + 57996404 57996703 AluYa5 310 - 15 310 95757 169 1 0 8 3 0 118 chain 3384 chr11 135006516 + 58012949 58012985 MER1A 529 + 407 443 217394 36 chain 79488 chr11 135006516 + 58019790 58021051 L1MA1 4479 - 328 1572 43832 9 1 0 35 2 0 21 9 8 126 2 0 5 1 0 54 0 13 21 1 0 19 7 10 4 1 0 71 1 0 16 2 0 24 1 0 53 1 0 139 6 3 37 4 5 89 3 0 72 7 2 52 5 0 12 1 0 74 4 0 20 40 37 47 0 1 84 1 4 77 chain 3679 chr11 135006516 + 58027539 58027583 L1MA5 2750 - 208 252 212250 44 chain 114463 chr11 135006516 + 58028509 58029839 L1PA5 6144 - 10 1358 32956 45 0 4 113 2 0 5 1 3 73 1 0 170 4 14 408 0 5 508 chain 3363 chr11 135006516 + 58030570 58030611 L1MA5 2750 - 1183 1224 217796 41 chain 498936 chr11 135006516 + 58044807 58051218 L1PA7 6471 - 6 6470 6900 157 1 0 7 4 8 76 1 0 4 0 1 75 1 0 78 11 13 342 0 1 77 6 5 79 0 3 190 1 0 10 0 8 134 0 4 174 0 1 40 4 1 25 1 0 126 0 1 15 0 4 88 0 9 698 31 7 456 0 4 41 2 0 13 1 0 4 1 2 297 0 3 243 0 1 12 0 1 150 12 0 144 0 1 255 0 24 180 6 5 31 1 0 10 0 3 287 10 6 6 0 4 123 4 1 6 0 3 463 9 10 53 0 1 530 0 25 197 12 0 72 12 19 165 1 6 146 chain 27671 chr11 135006516 + 58064932 58068561 L1PA3long 6157 - 2 359 94146 183 3272 0 174 chain 7956 chr11 135006516 + 58068573 58068659 L1PA3long 6157 + 6071 6157 171304 86 chain 33338 chr11 135006516 + 58070129 58070609 L1PA8 5853 - 0 473 78676 92 2 1 19 2 1 31 21 20 10 5 4 66 2 0 12 0 2 6 1 0 25 1 0 48 1 0 136 chain 4546 chr11 135006516 + 58070609 58070661 L1PA8 5853 + 5307 5359 200256 52 chain 490857 chr11 135006516 + 58071614 58077233 L1PA4 6152 - 1 6152 7324 339 1 0 391 2 0 44 3 1 1002 0 17 3109 7 0 20 1 2 131 0 1 431 40 565 98 chain 188877 chr11 135006516 + 58077243 58079674 HERV9-int 5642 - 3289 5629 20159 420 0 1 420 0 3 375 8 7 21 3 0 49 80 0 144 5 1 62 4 2 132 6 0 113 8 7 334 0 2 247 chain 8387 chr11 135006516 + 58115651 58115830 THE1C 375 - 197 375 168920 69 54 46 9 0 9 31 2 0 14 chain 50979 chr11 135006516 + 58130826 58131431 L1PA5 6144 - 199 788 58324 150 15 0 330 1 0 109 chain 8310 chr11 135006516 + 58132563 58132669 MER2 342 - 96 202 169338 106 chain 211363 chr11 135006516 + 58138370 58140707 L1PA3long 6157 + 3819 6157 18410 1342 0 1 995 chain 44819 chr11 135006516 + 58141696 58142255 L1PA7 6471 + 5896 6470 63268 50 0 15 345 9 10 150 1 0 4 chain 79143 chr11 135006516 + 58153262 58154136 L1PA3long 6157 - 0 874 43982 874 chain 101695 chr11 135006516 + 58157278 58158609 LTR12C 1709 - 0 1709 36344 82 1 0 67 0 100 124 0 3 105 11 4 106 4 2 4 1 0 167 0 286 80 0 1 112 6 5 42 2 1 6 0 1 411 chain 5021 chr11 135006516 + 58158844 58158908 MLT1D 503 - 343 407 194917 64 chain 232650 chr11 135006516 + 58181158 58183771 L1PA5 6144 + 3523 6141 17164 677 0 1 1096 0 4 840 chain 39841 chr11 135006516 + 58185840 58186331 MER9a1 513 + 0 513 69553 244 1 23 246 chain 189296 chr11 135006516 + 58213273 58215953 L1PBa1 4058 + 10 2704 20118 18 9 8 10 14 11 156 0 1 23 1 0 167 5 6 21 3 1 135 1 0 5 0 1 45 43 41 70 0 9 8 9 0 56 10 9 81 0 1 35 0 6 29 0 4 7 8 4 126 1 0 16 25 5 305 24 23 57 0 1 172 6 5 62 0 2 461 0 3 80 0 4 92 1 14 61 0 1 67 0 33 75 19 0 61 chain 45606 chr11 135006516 + 58218149 58218665 L1PA4 6152 + 5623 6139 62397 516 chain 5413 chr11 135006516 + 58219643 58219813 L1PB1 5432 + 5269 5418 190860 12 4 3 12 3 0 7 15 6 11 19 16 12 1 0 22 1 0 21 1 0 5 1 0 8 2 1 13 chain 30154 chr11 135006516 + 58220619 58220934 AluYb8 318 - 3 318 84323 315 chain 16469 chr11 135006516 + 58221878 58222053 L1PA3long 6157 + 5982 6157 137013 175 chain 51448 chr11 135006516 + 58225028 58225648 L1PA7 6471 + 5852 6470 58008 242 4 1 218 0 1 156 chain 33837 chr11 135006516 + 58228066 58228449 L1PA5 6144 + 5759 6142 77877 383 chain 26317 chr11 135006516 + 58235287 58235566 AluYa5 310 + 27 306 98756 279 chain 77660 chr11 135006516 + 58240726 58241787 MER11C 1089 + 0 1073 44671 246 0 9 62 0 4 65 1 0 146 78 72 86 1 5 39 9 10 121 0 1 54 1 0 144 0 1 8 chain 39222 chr11 135006516 + 58246774 58247313 MLT2A2 560 - 14 560 70426 29 4 0 8 4 8 88 2 13 30 9 5 365 chain 36005 chr11 135006516 + 58264382 58265052 L1PA15 4387 + 3699 4356 74891 14 17 19 73 5 7 23 5 0 24 7 11 20 3 5 15 1 2 20 1 0 168 6 5 26 4 3 50 8 7 13 4 0 13 1 0 50 6 3 29 37 30 27 chain 521813 chr11 135006516 + 58297211 58305134 L1PA7 6471 + 0 6461 4982 410 28 17 354 4 1 615 0 3 111 4 0 509 1467 0 143 0 4 223 15 14 782 0 1 199 0 1 95 0 1 122 0 2 125 0 1 103 6 5 115 1 0 251 0 2 462 0 8 17 3 4 15 3 5 406 0 1 496 0 1 79 3 0 603 9 10 145 chain 74897 chr11 135006516 + 58305247 58306059 L1PA3long 6157 - 0 812 46064 812 chain 117572 chr11 135006516 + 58308366 58309673 L1PA3long 6157 + 4849 6157 31936 47 0 1 1260 chain 25593 chr11 135006516 + 58340435 58340748 AluSp 311 + 0 311 101760 26 1 0 148 1 0 137 chain 6227 chr11 135006516 + 58411941 58412013 L1MA4 2864 - 380 452 183340 72 chain 23061 chr11 135006516 + 58412018 58412301 THE1A-int 1579 - 1261 1544 115354 283 chain 4166 chr11 135006516 + 58413827 58413871 THE1A-int 1579 - 1172 1216 205025 44 chain 24123 chr11 135006516 + 58428774 58429113 MER51A 677 - 16 346 109629 70 8 0 50 0 20 8 21 0 182 chain 13952 chr11 135006516 + 58438180 58438356 MER51A 677 - 501 677 144746 176 chain 4334 chr11 135006516 + 58441742 58441793 MER49 923 - 280 331 202785 51 chain 285302 chr11 135006516 + 58448333 58451808 L1PA7 6471 + 2563 6143 14337 76 2 0 26 0 1 13 1 2 1009 1 0 306 8 47 807 0 4 296 3 5 26 0 1 167 7 0 272 1 0 17 1 2 311 1 68 124 chain 26485 chr11 135006516 + 58451808 58452120 L1PA7 6471 + 6156 6468 98096 312 chain 29517 chr11 135006516 + 58462443 58462751 AluYb8 318 + 0 308 86575 308 chain 392150 chr11 135006516 + 58463758 58468127 L1PA3long 6157 - 0 4361 10390 652 8 0 7 6 4 989 0 1 579 0 1 32 1 0 1195 0 1 138 2 1 129 0 1 631 chain 16733 chr11 135006516 + 58473543 58473798 L1PA17 2846 + 27 282 136304 5 1 0 30 0 1 22 23 24 41 1 0 132 chain 4391 chr11 135006516 + 58474388 58474543 L1PBa 3878 + 112 218 202062 26 86 38 37 1 0 5 chain 43351 chr11 135006516 + 58478397 58478964 LTR10C 591 + 20 591 64990 12 2 0 96 4 3 119 10 11 199 0 4 46 0 2 79 chain 5505 chr11 135006516 + 58489489 58489560 LTR10C 591 + 0 71 189996 34 2 0 30 0 2 5 chain 5613 chr11 135006516 + 58511228 58511300 MER61C 433 + 362 433 188955 61 1 0 10 chain 499614 chr11 135006516 + 58517113 58523463 L1PA6 6164 + 0 6162 6857 302 0 8 144 0 4 334 17 0 15 0 17 120 6 0 7 1 7 31 3 0 492 0 1 20 0 1 588 5 6 116 0 2 239 246 32 488 0 2 91 0 1 51 1 2 147 0 6 255 4 5 670 0 1 444 8 7 156 0 1 1349 chain 17925 chr11 135006516 + 58530915 58531159 THE1B-int 1605 + 1346 1605 133048 19 7 24 59 2 0 157 chain 10006 chr11 135006516 + 58531161 58531333 THE1B 368 + 2 175 160556 74 16 16 19 12 13 51 chain 23230 chr11 135006516 + 58531405 58531705 AluY 311 + 10 305 114540 113 7 3 98 1 0 81 chain 3422 chr11 135006516 + 58533186 58533225 MLT1A0 366 + 327 366 216736 39 chain 18072 chr11 135006516 + 58533476 58533750 L1PB2 3958 + 3568 3838 132671 50 1 0 63 2 1 63 1 2 6 2 0 22 12 11 52 chain 39465 chr11 135006516 + 58537589 58538069 HERV1_LTRc 486 + 0 479 70061 94 1 0 385 chain 39181 chr11 135006516 + 58544322 58544799 HERV1_LTRc 486 + 0 478 70489 90 1 2 386 chain 26609 chr11 135006516 + 58554741 58555130 MLT2A1 477 + 5 384 97625 111 9 0 53 10 9 13 1 0 4 0 1 114 4 3 51 0 1 19 chain 54291 chr11 135006516 + 58557489 58558219 LTR30 714 - 0 714 56169 42 3 0 6 0 3 39 6 8 70 13 12 142 20 2 180 0 2 9 1 0 199 chain 8795 chr11 135006516 + 58562157 58562280 MER4-int 2692 - 2567 2686 166672 26 1 0 62 2 0 26 1 0 5 chain 27200 chr11 135006516 + 58578254 58578675 MER4A1 472 + 23 472 95602 6 1 0 165 35 58 124 30 36 60 chain 12446 chr11 135006516 + 58580640 58580866 LTR8 732 - 463 716 150472 18 34 53 143 15 23 16 chain 130289 chr11 135006516 + 58581420 58583442 L1PA7 6471 - 2 1715 28021 10 2 0 125 19 13 7 0 7 154 1 2 518 4 8 10 5 6 96 0 3 289 2 0 256 314 0 98 6 5 106 chain 517449 chr11 135006516 + 58583458 58589562 L1PA5 6144 + 0 6134 5430 82 1 0 38 0 14 594 0 1 79 0 2 625 3 1 6 0 2 184 0 1 865 7 4 160 0 1 203 0 1 301 1 0 94 1 2 25 0 4 879 0 1 367 6 4 21 0 6 211 0 1 512 0 3 516 6 7 317 chain 25347 chr11 135006516 + 58592620 58592969 L1PA8 5853 - 3 344 102972 90 1 0 19 2 1 47 1 0 14 1 0 71 3 1 42 2 1 49 1 0 6 chain 171916 chr11 135006516 + 58592979 58595770 MER4-int 2692 + 164 2692 21826 15 0 1 7 0 1 126 0 14 172 0 7 106 0 4 17 2 0 86 2 0 56 4 17 53 14 16 119 1 0 4 0 2 133 12 16 176 1 0 9 7 5 76 17 47 28 31 31 156 1 0 114 10 9 94 2 0 5 2 6 53 1 0 68 0 1 78 2 0 165 0 2 11 329 0 55 1 0 4 1 2 164 12 0 7 3 11 179 chain 32615 chr11 135006516 + 58595778 58596233 MER4A1 472 + 0 455 79828 13 1 3 5 0 1 11 1 0 192 16 17 60 3 0 153 chain 9480 chr11 135006516 + 58617140 58617246 L1PA7 6471 + 6191 6297 163159 106 chain 11359 chr11 135006516 + 58617273 58617416 L1PA7 6471 + 6324 6467 154864 143 chain 535313 chr11 135006516 + 58638766 58644895 L1PA4 6152 - 8 6152 3546 147 0 1 623 0 1 74 1 0 1955 0 1 39 4 0 17 1 0 35 0 1 78 1 2 2135 0 1 661 25 26 180 11 25 142 chain 139583 chr11 135006516 + 58649062 58650728 L1PA6 6164 - 2 1699 26207 13 3 0 376 1 8 457 1 0 76 0 1 329 0 20 89 1 7 156 0 1 164 chain 105911 chr11 135006516 + 58650728 58651983 L1PA6 6164 + 3189 4451 35195 201 0 1 614 0 3 265 0 3 175 chain 44160 chr11 135006516 + 58691470 58692037 LTR22 571 - 4 571 63999 224 4 6 259 1 0 7 2 1 70 chain 44860 chr11 135006516 + 58696040 58696605 LTR22 571 - 7 571 63220 474 9 8 82 chain 45391 chr11 135006516 + 58708515 58709038 L1PA3long 6157 - 0 514 62608 368 2 0 127 12 5 14 chain 22563 chr11 135006516 + 58717498 58717788 AluYc 301 + 26 295 117748 88 20 0 132 1 0 49 chain 38408 chr11 135006516 + 58733538 58734046 MER9a3 513 + 8 513 71564 5 0 2 96 0 1 144 1 0 60 7 0 105 0 1 12 4 5 74 chain 402737 chr11 135006516 + 58739742 58744510 L1PA5 6144 + 0 6134 10003 84 1 0 11 11 4 379 0 17 310 0 1 1256 0 1 178 0 4 22 0 1351 311 0 1 728 4 1 97 0 1 288 0 1 1088 chain 26488 chr11 135006516 + 58748999 58749318 L1PA4 6152 - 9 329 98088 140 1 2 178 chain 467819 chr11 135006516 + 58751424 58757546 L1PA6 6164 - 2 6164 8118 9 1 0 144 17 9 6 0 7 73 1 2 577 1 2 13 0 5 197 1 2 259 0 1 67 1 7 311 0 3 375 6 7 564 0 1 183 0 2 68 8 21 60 1 0 8 9 10 459 1 4 377 5 6 286 4 3 54 0 7 252 0 2 41 15 0 207 5 6 14 1 3 192 0 1 7 9 8 254 0 1 57 0 1 58 12 13 263 0 4 22 1 0 143 56 56 81 5 6 281 chain 170267 chr11 135006516 + 58767856 58770225 HERVK-int 6823 + 3087 5415 22018 28 75 74 705 0 2 633 1 0 172 19 20 35 0 1 402 0 1 4 4 3 10 51 8 230 chain 76974 chr11 135006516 + 58772201 58773189 LTR5B 1012 + 0 1003 44987 128 1 14 215 0 1 87 15 17 27 1 0 514 chain 547989 chr11 135006516 + 58782717 58788853 L1PA3long 6157 + 6 6157 1710 1039 0 2 69 0 1 3047 0 9 1515 0 2 316 2 3 148 chain 76970 chr11 135006516 + 58903763 58904736 LTR5B 1012 + 0 998 44989 51 0 1 82 0 14 128 0 7 147 7 8 51 1 0 29 0 1 229 0 2 105 22 22 121 chain 8810 chr11 135006516 + 58922462 58922571 LTR47A 437 + 302 411 166603 109 chain 2392 chr11 135006516 + 58924746 58924830 MLT1C 463 - 39 121 234279 20 46 44 18 chain 9825 chr11 135006516 + 58937316 58937466 HSMAR2 1300 - 1150 1299 161477 86 3 1 43 4 5 14 chain 25192 chr11 135006516 + 58996534 58996828 AluY 311 + 4 295 103783 122 3 0 169 chain 29748 chr11 135006516 + 59000179 59000721 LOR1-int 1871 + 90 643 85664 74 1 0 4 57 70 17 6 0 32 1 0 8 4 8 57 4 0 29 11 12 181 5 8 6 0 4 6 4 0 7 0 2 28 chain 270166 chr11 135006516 + 59001767 59005775 L1PA10 4194 + 175 4161 15176 12 2 0 14 31 22 9 2 0 7 86 74 19 24 21 10 31 21 10 4 0 9 1 0 6 0 1 62 20 18 44 32 39 96 3 8 76 9 0 215 8 0 33 3 26 161 9 12 46 0 1 24 0 3 170 9 3 7 0 4 79 2 1 446 0 1 87 0 1 239 1 4 260 4 5 8 0 1 39 6 7 27 7 6 36 0 5 13 11 13 27 0 1 53 1 0 12 1 2 123 1 0 9 30 22 536 0 1 556 3 0 34 7 4 34 1 0 11 chain 29103 chr11 135006516 + 59019283 59019596 AluYb8 318 + 0 311 88538 217 2 0 94 chain 451486 chr11 135006516 + 59043775 59049699 HERVL-int 5654 + 17 5654 8720 635 1 0 25 0 1 4 1 0 54 1 7 38 0 1 301 0 1 86 8 18 118 0 1 392 12 10 202 6 3 292 0 1 421 0 1 222 324 0 428 0 1 19 0 2 343 1 0 6 4 14 69 0 5 336 1 3 208 6 0 421 0 8 83 5 6 293 6 5 491 0 1 61 chain 25664 chr11 135006516 + 59049699 59050053 MLT2A1 477 + 0 371 101436 101 1 0 71 21 38 100 0 1 60 chain 49375 chr11 135006516 + 59062380 59063486 MER41-int 2638 - 1672 2552 59466 110 0 1 33 0 14 94 0 5 65 27 28 55 6 8 94 1 0 37 2 0 4 342 0 61 1 0 55 27 133 53 21 12 18 chain 4335 chr11 135006516 + 59063052 59063107 MER41-int 2638 - 2022 2077 202781 55 chain 10004 chr11 135006516 + 59063113 59063245 MER41-int 2638 - 2085 2216 160566 95 1 0 36 chain 854 chr11 135006516 + 59079631 59079712 MER85 139 - 0 91 168068 35 0 10 46 chain 49731 chr11 135006516 + 59079724 59080311 L1PA6 6164 + 5558 6152 59208 409 0 7 178 chain 464 chr11 135006516 + 59080397 59080441 MER85 139 - 91 135 168068 44 chain 505150 chr11 135006516 + 59082950 59089064 L1PA6 6164 - 5 6164 6526 155 1 0 1194 0 2 535 1 2 122 0 1 242 0 2 511 0 4 89 1 0 346 0 1 370 0 4 230 0 1 18 7 0 118 0 1 824 0 1 314 0 1 178 16 5 64 0 17 119 9 10 168 11 10 97 19 48 355 chain 37989 chr11 135006516 + 59107939 59108433 L1PBa 3878 - 130 623 72148 11 2 0 21 2 1 217 0 1 163 0 1 78 chain 92982 chr11 135006516 + 59110521 59111644 L1PA5 6144 - 12 1143 38661 74 0 1 54 12 21 83 2 0 797 0 1 4 1 0 96 chain 520874 chr11 135006516 + 59111650 59117785 L1PA3long 6157 - 0 6157 5072 869 0 4 1550 0 1 62 0 1 481 1 0 196 0 1 67 0 2 865 1 0 276 0 2 83 0 1 236 0 5 8 2 1 732 1 8 242 15 9 72 15 22 361 chain 127025 chr11 135006516 + 59142925 59144322 L1PA3long 6157 + 4759 6157 28810 1369 0 1 28 chain 532540 chr11 135006516 + 59149131 59155268 L1PA4 6152 - 9 6151 3903 732 0 1 115 0 1 66 0 1 27 5 6 1255 0 1 111 0 1 784 6 0 1331 0 1 255 0 4 1450 chain 7825 chr11 135006516 + 59172347 59172633 MER57-int 2662 + 40 308 26337 30 47 29 9 1 0 95 0 1 104 chain 221123 chr11 135006516 + 59173037 59175513 L1PA3long 6157 + 3689 6157 17807 776 9 0 841 0 1 850 chain 52174 chr11 135006516 + 59175516 59177423 MER57-int 2662 + 762 2643 26337 53 2 0 281 4 0 93 0 1 102 1 2 48 41 43 139 0 6 16 1 0 50 5 9 101 1 0 135 17 0 16 0 2 49 3 0 56 4 10 176 0 10 132 0 1 39 1 0 92 18 12 46 2 0 6 84 71 24 1 0 6 15 10 24 3 0 20 chain 43599 chr11 135006516 + 59179484 59179964 L1PA3long 6157 - 15 495 64686 480 chain 58934 chr11 135006516 + 59186900 59187656 MER4E 760 - 0 760 53437 397 0 2 180 38 41 116 1 0 24 chain 7838 chr11 135006516 + 59204829 59204992 L1MC1 2226 - 179 337 172085 45 51 47 41 1 0 25 chain 21985 chr11 135006516 + 59209648 59209931 AluSp 311 + 11 298 120292 51 10 14 222 chain 7785 chr11 135006516 + 59215430 59215611 MER30 238 - 0 207 172388 45 1 3 22 2 7 23 2 0 7 4 0 7 42 67 26 chain 216340 chr11 135006516 + 59231257 59234486 L1PB1 5432 + 2525 5424 18095 222 0 1 40 6 0 328 0 1 125 9 8 40 12 11 306 0 1 121 1 3 301 1 0 131 1 5 261 2 1 4 0 1 185 3 0 174 0 1 250 0 1 5 1 0 51 309 11 24 1 0 9 43 36 37 2 1 16 2 1 42 1 0 16 1 0 4 17 8 19 9 6 13 3 1 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 25753 chr11 135006516 + 59242247 59242563 AluY 311 + 0 310 101068 126 4 0 172 2 0 12 chain 69287 chr11 135006516 + 59260931 59261695 L1PA3long 6157 + 5391 6157 48689 759 0 2 5 chain 20776 chr11 135006516 + 59272293 59272546 AluSc8 310 + 0 261 124695 29 3 8 95 0 3 126 chain 114966 chr11 135006516 + 59274501 59275762 L1PA2 6032 - 3 1267 32804 12 1 0 133 0 4 1115 chain 23906 chr11 135006516 + 59283672 59283986 AluSp 311 + 0 309 110874 131 17 12 166 chain 21795 chr11 135006516 + 59287854 59288093 L1PA3long 6157 + 5918 6157 121035 239 chain 122180 chr11 135006516 + 59311007 59312409 L1PA5 6144 - 0 1404 30319 112 1 0 848 0 1 398 0 2 43 chain 10387 chr11 135006516 + 59314812 59314936 MER41B 635 - 0 124 158755 124 chain 6994 chr11 135006516 + 59318101 59318174 tRNA-Val-GTA 73 - 0 73 177517 73 chain 6872 chr11 135006516 + 59318459 59318532 tRNA-Val-GTA 73 - 0 73 178420 73 chain 3547 chr11 135006516 + 59318766 59318803 tRNA-Arg-AGA 37 + 0 37 214600 37 chain 5888 chr11 135006516 + 59319238 59319310 tRNA-Leu-TTA 75 + 3 75 186303 72 chain 19888 chr11 135006516 + 59322067 59322303 AluSq2 311 + 28 265 127525 105 0 1 131 chain 6759 chr11 135006516 + 59323901 59323974 tRNA-Lys-AAA 73 + 0 73 179259 73 chain 6994 chr11 135006516 + 59324969 59325042 tRNA-Phe-TTY 73 - 0 73 177515 73 chain 6881 chr11 135006516 + 59327807 59327880 tRNA-Lys-AAA 73 - 0 73 178346 73 chain 6863 chr11 135006516 + 59333852 59333925 tRNA-Phe-TTY 73 - 0 73 178477 73 chain 22012 chr11 135006516 + 59334784 59335042 AluSp 311 + 36 294 120173 258 chain 9119 chr11 135006516 + 59346375 59346485 L1MA3 4352 - 109 218 164971 64 1 0 45 chain 110018 chr11 135006516 + 59352409 59353642 SVA_D 2077 + 335 2065 34214 453 1 3 99 0 396 20 0 49 8 0 50 24 1 0 347 0 1 280 chain 6441 chr11 135006516 + 59358863 59359028 MER2 342 - 25 191 181698 12 26 32 23 38 33 66 chain 28899 chr11 135006516 + 59398806 59399121 AluYb9 318 + 1 315 89458 199 1 0 115 chain 30810 chr11 135006516 + 59412511 59412855 SVA_D 2077 - 257 953 82847 278 0 352 66 chain 24032 chr11 135006516 + 59438717 59439010 AluY 311 + 2 286 110154 114 9 0 170 chain 3878 chr11 135006516 + 59444086 59444136 Tigger1 2417 - 827 880 209189 45 0 3 5 chain 11294 chr11 135006516 + 59455766 59455899 MER50 708 - 9 145 155075 37 0 3 96 chain 139432 chr11 135006516 + 59466491 59468022 SVA_D 2077 + 6 2067 26232 758 0 1 86 0 40 26 0 489 661 chain 7202 chr11 135006516 + 59468391 59468489 MSTA 426 - 51 169 176053 58 1 21 39 chain 32885 chr11 135006516 + 59474382 59474800 LTR3 431 + 4 422 79388 259 1 0 38 6 7 114 chain 4523 chr11 135006516 + 59478262 59478317 MLT1H2 457 - 305 360 200528 55 chain 23849 chr11 135006516 + 59491454 59491787 L1PB2 3958 + 3225 3544 111189 82 2 0 56 1 0 11 5 0 58 8 6 13 4 0 93 chain 27989 chr11 135006516 + 59499785 59500129 MER41B 635 - 0 344 93040 344 chain 50801 chr11 135006516 + 59500131 59501081 PABL_A 660 + 0 658 58432 127 1 0 151 0 1 150 295 0 79 0 2 42 8 9 27 1 0 4 0 1 65 chain 269388 chr11 135006516 + 59504369 59508646 L1PB1 5432 - 10 3780 15211 18 1 0 12 1 0 22 1 0 19 28 25 18 15 6 6 2 0 15 5 4 32 9 8 16 2 1 52 2 0 6 9 5 10 1 0 9 1 0 24 3 0 11 0 1 104 0 1 27 7 0 59 0 1 97 0 1 191 7 4 98 184 0 20 0 1 111 3 1 46 0 5 380 0 1 210 11 18 438 1 9 223 13 8 100 0 1 102 18 17 247 0 5 19 306 0 16 2 1 46 6 0 322 31 21 22 0 7 30 8 18 281 2 0 30 0 1 17 0 1 92 chain 14371 chr11 135006516 + 59520004 59520177 L1PA4 6152 - 0 174 143298 147 3 4 23 chain 11808 chr11 135006516 + 59555112 59555269 MER30B 195 - 0 164 152995 94 11 18 52 chain 23672 chr11 135006516 + 59579556 59579871 MER4E 760 - 435 760 112191 64 16 18 81 1 0 104 0 8 32 0 1 17 chain 34491 chr11 135006516 + 59581875 59582326 MER4A1 472 - 0 472 76922 48 0 1 4 3 2 165 5 26 226 chain 34793 chr11 135006516 + 59583750 59584200 MER4A1 472 - 0 472 76488 11 1 0 209 5 26 195 1 0 9 0 1 5 0 2 14 chain 32500 chr11 135006516 + 59593068 59594010 L1PA17 2846 - 199 926 80023 15 1 0 29 39 36 34 1 0 13 4 0 10 13 8 109 379 36 205 22 36 5 0 1 18 0 1 32 0 126 13 chain 47078 chr11 135006516 + 59615522 59616037 L1PA3long 6157 - 10 525 61142 515 chain 285971 chr11 135006516 + 59655203 59659185 L1PA10 4194 - 33 4007 14290 11 1 0 33 3 0 41 3 0 124 6 5 248 0 1 85 0 4 10 5 1 29 1 3 147 0 1 51 0 1 407 7 0 72 0 3 47 2 1 18 0 9 141 12 5 120 0 5 18 1 0 53 6 5 92 0 3 141 2 7 68 1 3 126 0 7 39 0 3 125 0 3 689 1 0 121 1 2 40 1 0 11 10 14 45 0 1 71 8 9 26 16 15 66 0 1 250 4 2 6 0 1 4 1 0 68 1 0 7 0 1 13 8 0 7 0 3 9 88 77 14 3 1 21 1 0 9 0 1 5 27 19 9 2 0 8 3 0 12 chain 29365 chr11 135006516 + 59666979 59667367 MER48 407 - 0 407 87222 44 0 3 5 4 1 185 5 24 145 chain 37176 chr11 135006516 + 59671186 59671629 L1PA5 6144 + 5704 6143 73272 235 3 0 35 11 10 159 chain 383617 chr11 135006516 + 59673030 59678212 L1PB1 5432 - 151 5352 10652 44 20 17 25 0 5 20 3 1 12 53 61 57 2 3 195 5 11 14 9 13 177 5 0 271 0 2 21 0 1 4 2 1 68 0 20 506 2 3 373 0 2 240 10 11 605 2 0 6 14 12 42 10 0 567 1 0 62 0 1 160 1 0 230 24 15 8 1 0 160 3 6 237 12 8 423 0 1 6 0 2 7 3 0 176 5 11 156 5 3 93 5 6 20 chain 5630 chr11 135006516 + 59679043 59679123 L1MA8 2339 - 143 220 188762 39 5 2 36 chain 120918 chr11 135006516 + 59683737 59685320 THE1B-int 1605 - 0 1605 30722 810 16 26 72 4 2 235 3 28 55 0 1 102 22 7 151 0 3 113 chain 38733 chr11 135006516 + 59691055 59691531 MER9a1 513 + 14 513 71101 230 1 23 53 0 1 192 chain 309176 chr11 135006516 + 59692833 59696739 HERVK9-int 4720 + 37 4720 13038 12 8 5 5 1 0 99 6 5 50 4 5 307 0 1 5 1 0 234 4 5 490 1 0 193 0 1 517 2 0 129 4 0 187 3 6 358 74 813 230 1 2 44 0 1 93 4 3 15 0 48 140 8 7 397 3 0 93 1 0 183 chain 38644 chr11 135006516 + 59696757 59697229 MER9a1 513 + 18 513 71232 226 1 23 35 1 2 209 chain 11837 chr11 135006516 + 59710539 59710669 L1PA4 6152 - 173 303 152877 130 chain 14628 chr11 135006516 + 59710669 59710830 L1PA4 6152 + 5979 6140 142494 161 chain 23498 chr11 135006516 + 59724071 59724514 L1PB1 5432 - 29 442 113136 12 1 0 20 2 1 24 2 0 14 12 9 14 23 13 15 1 0 44 1 0 16 2 1 53 2 0 5 20 15 11 1 0 22 1 0 11 2 1 112 chain 23688 chr11 135006516 + 59732494 59732770 L1PA4 6152 + 5867 6141 112101 6 0 4 120 6 0 144 chain 16799 chr11 135006516 + 59749560 59749762 L1P1 4361 - 33 233 136118 23 1 0 154 1 0 23 chain 175092 chr11 135006516 + 59758157 59760782 L1PB1 5432 - 9 2598 21449 8 1 0 11 1 0 13 97 82 13 2 0 14 1 0 45 7 6 10 2 1 47 21 15 14 2 1 5 1 0 24 13 11 38 1 0 68 10 13 256 0 1 13 20 21 156 1 3 185 2 1 76 1 0 274 5 7 159 1 0 4 14 0 105 4 6 30 0 4 131 9 8 167 1 0 133 18 19 391 chain 406156 chr11 135006516 + 59773117 59778377 L1PA8 5853 - 0 5306 9908 78 16 15 19 2 1 40 27 25 67 2 0 45 1 0 47 0 1 420 1 0 7 1 4 11 2 3 51 8 10 53 0 12 282 0 6 8 0 16 172 7 12 83 12 6 116 0 4 29 2 1 143 5 15 375 39 11 178 0 1 80 11 12 179 7 6 242 0 3 80 2 0 257 0 1 4 1 0 12 2 1 4 0 1 119 0 4 166 9 33 27 1 0 235 1 0 782 8 10 70 0 1 78 2 1 335 7 8 69 5 1 72 0 2 44 chain 14778 chr11 135006516 + 59778471 59778654 Tigger3c 601 + 325 518 142009 35 1 11 147 chain 135406 chr11 135006516 + 59779530 59781126 L1PA4 6152 + 4582 6152 26937 56 0 5 651 0 1 523 2 1 207 45 8 102 0 6 10 chain 95842 chr11 135006516 + 59786860 59788252 LTR12C 1709 - 0 1709 37863 29 0 4 49 1 0 51 1 0 163 1 2 37 5 9 60 4 3 74 20 13 97 3 1 5 1 0 149 0 278 173 11 10 17 2 1 19 1 2 45 37 80 40 9 7 29 5 6 172 18 20 64 chain 15950 chr11 135006516 + 59809376 59809611 AluYc 301 + 9 282 138515 63 25 72 131 9 0 7 chain 207876 chr11 135006516 + 59816175 59818457 L1HS 6032 - 0 2283 18651 2213 0 1 69 chain 79620 chr11 135006516 + 59818461 59819325 L1PA3long 6157 + 5288 6157 43769 19 0 1 4 0 4 841 chain 15131 chr11 135006516 + 59831210 59831477 L1PB1 5432 + 5176 5420 140972 44 2 1 16 1 0 43 1 0 16 3 0 6 15 6 19 8 5 14 2 0 24 1 0 23 1 0 11 1 0 16 chain 18549 chr11 135006516 + 59836187 59836416 L1PA6 6164 - 8 237 131357 229 chain 36076 chr11 135006516 + 59839021 59839496 LTR15 485 - 7 485 74790 21 0 1 14 2 0 5 1 0 88 4 5 6 1 0 59 0 4 23 2 1 100 0 2 45 0 1 43 1 0 60 chain 124405 chr11 135006516 + 59840001 59841427 SVA_C 1631 - 13 1600 29572 588 0 41 34 1 0 50 0 1 15 22 104 280 0 39 258 1 0 177 chain 23863 chr11 135006516 + 59854064 59854359 AluSp 311 + 13 311 111115 67 5 6 194 0 2 29 chain 19519 chr11 135006516 + 59866944 59867194 AluYc 301 + 36 294 128595 78 1 3 80 0 6 91 chain 35360 chr11 135006516 + 59868854 59869313 LTR2 463 - 0 458 75717 88 12 13 301 6 4 52 chain 408617 chr11 135006516 + 59869318 59874390 Harlequin-int 5206 - 0 5081 9843 330 1 5 211 0 2 93 0 1 533 0 1 348 3 0 7 4 3 637 0 1 18 0 11 152 0 1 180 2 1 184 1 0 225 7 6 648 0 8 164 34 0 143 2 1 118 21 7 156 1 0 183 1 2 338 1 3 39 0 39 31 5 0 68 1 2 33 2 1 147 chain 31782 chr11 135006516 + 59875988 59876445 LTR2 463 - 0 463 81197 65 35 36 63 1 0 137 1 6 16 3 4 136 chain 5306 chr11 135006516 + 59879272 59879338 LTR47A 437 + 42 108 191962 66 chain 30542 chr11 135006516 + 59880188 59880716 MER4D1 891 - 74 615 83351 15 2 0 93 48 66 26 1 0 13 0 4 69 4 7 45 10 13 37 1 0 15 1 0 48 1 0 39 10 1 50 chain 30700 chr11 135006516 + 59889272 59889731 Charlie3 2679 + 2217 2671 83038 261 4 6 58 8 2 15 0 1 22 36 34 55 chain 9898 chr11 135006516 + 59894136 59894265 L1PA5 6144 - 0 128 161076 104 5 4 20 chain 66645 chr11 135006516 + 59896564 59897321 L1PA5 6144 + 5387 6144 49810 757 chain 145299 chr11 135006516 + 59920431 59922036 L1PA3long 6157 - 0 1605 25281 1605 chain 100993 chr11 135006516 + 59922036 59923127 L1PA3long 6157 + 3479 4570 36491 1091 chain 38149 chr11 135006516 + 59952918 59953378 LTR2 463 + 0 463 71911 126 1 4 333 chain 424178 chr11 135006516 + 59955133 59960208 Harlequin-int 5206 + 125 5205 9442 10 2 1 152 0 1 17 1 0 167 6 5 204 1 0 135 0 3 24 0 1 26 1 0 220 22 19 89 0 2 669 0 4 978 0 1 95 0 1 739 5 2 214 0 1 354 0 2 944 chain 36963 chr11 135006516 + 59960209 59960661 LTR2 463 + 0 461 73566 38 0 1 90 0 3 89 0 5 235 chain 30242 chr11 135006516 + 59961461 59961941 LTR15 485 - 7 485 84080 18 5 6 12 2 0 6 1 0 156 0 4 100 3 4 20 2 4 23 4 0 21 0 1 13 20 20 7 4 0 63 chain 133640 chr11 135006516 + 59967785 59969343 SVA_D 2077 - 21 1745 27292 649 15 14 4 0 1 79 19 47 4 0 1 31 1 2 138 1 0 32 0 1 8 11 147 566 chain 15055 chr11 135006516 + 59984152 59984433 MLT2A2 560 + 0 555 141156 114 6 0 6 13 35 28 1 0 10 36 295 11 1 0 6 0 1 49 chain 37793 chr11 135006516 + 59984533 59985017 HERVL-int 5654 + 295 779 72427 5 0 2 339 10 8 130 chain 214326 chr11 135006516 + 60016262 60018830 L1PA7 6471 - 13 2642 18209 162 1 0 765 0 1 330 0 1 80 0 1 4 0 1 18 0 18 115 1 3 287 0 4 203 4 41 418 9 6 171 chain 3963 chr11 135006516 + 60047628 60047705 MADE1 96 + 2 96 207934 16 1 0 5 17 35 38 chain 35728 chr11 135006516 + 60089449 60089913 L1PA10 4194 + 3699 4161 75229 59 0 1 345 2 3 9 3 0 34 1 0 11 chain 43930 chr11 135006516 + 60090489 60091024 L1PA7 6471 + 5878 6465 64295 72 0 1 143 1 0 70 0 3 67 1 50 181 chain 117589 chr11 135006516 + 60096471 60098516 L1PA7 6471 - 4 1426 31929 416 1 2 292 0 1 110 314 2 23 1 0 169 314 0 31 0 2 374 chain 50926 chr11 135006516 + 60135137 60135862 LTR17 781 + 0 757 58353 58 1 0 98 6 5 18 1 0 101 0 1 43 4 3 21 25 26 108 1 13 209 7 29 24 chain 62717 chr11 135006516 + 60141859 60142556 L1P1 4361 - 855 1552 51579 697 chain 3206 chr11 135006516 + 60188777 60188813 MLT2B1 522 - 0 36 220850 36 chain 550232 chr11 135006516 + 60202890 60208914 L1PA2 6032 + 0 6032 1414 257 1 0 393 0 7 379 1 4 4841 1 0 151 chain 19472 chr11 135006516 + 60209834 60210126 L1PA8 5853 + 5564 5853 128744 45 2 0 70 2 1 7 0 6 7 8 0 40 2 1 19 2 1 45 0 4 43 chain 19195 chr11 135006516 + 60216728 60217111 L1PA15 4387 + 3999 4366 129540 21 8 13 57 4 2 12 2 1 15 20 19 46 1 0 12 0 2 5 6 0 13 1 0 50 6 3 46 2 0 11 10 5 25 1 0 9 chain 152079 chr11 135006516 + 60218200 60219888 SVA_F 1814 + 14 1812 24328 591 0 1 95 0 40 106 0 3 5 0 50 43 0 15 31 0 1 460 0 3 339 3 0 15 chain 9631 chr11 135006516 + 60239819 60239928 L1PA3long 6157 - 3500 3609 162436 109 chain 316444 chr11 135006516 + 60239928 60243415 L1PA3long 6157 + 2665 6157 12745 125 0 2 200 0 2 43 0 1 3119 chain 3512 chr11 135006516 + 60243495 60243536 MER57B1 401 + 2 43 215196 41 chain 29892 chr11 135006516 + 60252365 60252680 AluYb8 318 - 3 318 85124 315 chain 132557 chr11 135006516 + 60258362 60259888 SVA_C 1631 + 0 1623 27513 17 2 0 5 0 3 6 6 0 131 0 22 672 4 0 9 1 0 45 2 0 33 0 87 593 chain 136583 chr11 135006516 + 60277086 60278658 SVA_B 1603 + 4 1603 26721 17 9 34 7 0 2 856 0 1 55 1 0 32 1 0 83 0 1 511 chain 11078 chr11 135006516 + 60287534 60287724 THE1B 368 + 0 180 155901 19 2 0 20 1 6 59 22 11 55 2 0 10 chain 116687 chr11 135006516 + 60287730 60289276 THE1B-int 1605 - 5 1588 32229 137 10 9 62 0 1 47 0 2 152 34 35 9 0 4 205 0 1 454 2 1 24 0 25 60 2 1 63 1 7 45 0 1 27 1 0 211 chain 27540 chr11 135006516 + 60289303 60289659 THE1B 368 - 12 368 94533 164 2 0 19 2 1 127 0 5 27 2 0 13 chain 558453 chr11 135006516 + 60299634 60305663 L1PA2 6032 + 3 6032 457 6029 chain 71320 chr11 135006516 + 60315069 60315846 L1PA3long 6157 + 5380 6157 47781 426 0 1 333 1 0 17 chain 498982 chr11 135006516 + 60317866 60323983 L1PA6 6164 + 0 6162 6896 201 0 1 81 69 72 57 1 0 97 2 1 115 30 30 62 4 13 19 0 1 28 0 1 163 0 6 231 0 3 6 12 11 138 15 36 415 6 8 417 0 2 110 0 2 73 0 4 37 0 3 695 0 1 4 5 7 196 21 0 129 0 3 5 4 1 410 1 0 473 0 4 204 0 1 131 1 2 393 0 1 671 1 3 384 chain 46039 chr11 135006516 + 60327376 60327939 LTR22 571 - 3 571 62005 176 3 0 6 0 3 77 15 20 286 chain 58848 chr11 135006516 + 60331892 60332620 LTR12 884 + 0 869 53489 25 1 0 74 0 4 78 0 25 59 0 113 491 chain 5250 chr11 135006516 + 60338398 60338613 L1MB4 1306 + 619 837 192511 55 130 134 4 1 0 25 chain 45827 chr11 135006516 + 60339938 60340457 L1PA4 6152 - 0 519 62203 150 0 1 104 1 0 264 chain 290400 chr11 135006516 + 60347514 60351458 L1PB1 5432 + 1502 5423 13994 342 0 4 16 0 1 119 1 0 143 0 1 140 0 3 217 16 14 84 0 1 4 2 4 93 1 2 135 0 1 16 3 1 155 1 0 336 0 2 398 13 15 72 13 15 15 4 3 108 1 0 30 16 7 75 5 14 85 7 7 163 0 11 8 1 0 163 12 0 101 3 0 179 1 2 48 0 3 7 2 0 238 13 11 24 10 8 12 5 1 9 2 0 51 1 0 13 5 4 45 1 0 15 2 0 6 15 6 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 19 chain 110291 chr11 135006516 + 60352520 60354269 L1MA1 4479 + 2100 4190 34132 66 4 0 273 0 1 38 7 11 16 7 6 85 13 0 21 0 4 47 1 0 69 20 2 8 0 18 9 2 0 25 8 7 60 1 0 68 0 3 19 3 2 27 2 0 42 0 1 128 3 1 33 1 0 61 1 0 12 5 0 53 48 423 16 6 5 69 0 9 8 2 0 12 2 1 21 0 2 42 0 1 22 9 5 126 1 0 29 2 0 35 1 0 9 1 0 11 20 9 19 chain 9461 chr11 135006516 + 60364162 60364266 L1PA3long 6157 - 0 104 163270 104 chain 75947 chr11 135006516 + 60364792 60365630 L1PA5 6144 + 5306 6144 45515 838 chain 140558 chr11 135006516 + 60368451 60370003 L1PA3long 6157 - 2 1573 26065 498 0 19 1054 chain 130601 chr11 135006516 + 60370003 60371423 L1PA3long 6157 + 3143 4564 27867 970 0 1 450 chain 154281 chr11 135006516 + 60388815 60391141 SVA_D 2077 + 0 2075 24067 477 1 3 113 40 0 227 482 92 36 40 0 88 0 2 138 0 225 664 10 0 10 chain 27682 chr11 135006516 + 60389683 60390109 SVA_F 1814 + 847 1264 94108 22 11 14 8 0 1 52 81 18 38 0 1 148 0 49 66 chain 4541 chr11 135006516 + 60389792 60389857 SVA_F 1814 + 664 849 109742 43 0 120 22 chain 1956 chr11 135006516 + 60390109 60390137 SVA_F 1814 + 1088 1116 109742 28 chain 3523 chr11 135006516 + 60390191 60390231 SVA_D 2077 + 1135 1175 93284 40 chain 55540 chr11 135006516 + 60391468 60392308 L1PA13 3608 + 296 1145 55395 119 1 0 13 1 0 10 1 0 4 38 28 12 9 8 10 3 1 14 3 1 10 10 9 96 2 0 256 0 30 228 chain 79213 chr11 135006516 + 60419798 60420724 L1PA6 6164 - 13 949 43939 140 1 8 683 1 5 47 1 0 53 chain 8264 chr11 135006516 + 60425057 60425156 MER4A 717 - 378 480 169599 6 0 1 56 0 2 37 chain 9576 chr11 135006516 + 60433145 60433259 L1PA16 3655 + 3388 3502 162717 114 chain 31671 chr11 135006516 + 60451268 60451670 LTR46 455 - 56 455 81372 85 7 6 119 3 1 188 chain 79947 chr11 135006516 + 60480658 60481952 LTR5_Hs 974 - 0 974 43622 104 1 0 91 6 29 207 4 5 272 18 0 10 325 0 256 chain 29670 chr11 135006516 + 60481382 60481696 AluYb8 318 - 4 318 85954 314 chain 3169 chr11 135006516 + 60487800 60487899 MIRb 242 - 134 233 221574 30 49 49 20 chain 4241 chr11 135006516 + 60489467 60489576 Charlie1a 1436 + 1326 1432 204005 20 2 0 30 37 36 20 chain 33640 chr11 135006516 + 60494249 60494669 L1PA8 5853 - 3 432 78187 90 1 0 19 2 1 50 2 0 11 2 1 56 0 15 45 1 0 141 chain 16242 chr11 135006516 + 60500341 60500573 MER75 514 - 62 297 137647 10 0 1 89 0 1 58 18 19 57 chain 5006 chr11 135006516 + 60508151 60508320 LTR16C 481 - 251 421 195077 22 92 93 55 chain 6747 chr11 135006516 + 60522052 60522132 MLT1A1 405 - 12 92 179347 80 chain 157967 chr11 135006516 + 60581971 60583847 SVA_F 1814 + 0 1812 23598 925 1 0 4 46 33 43 1 0 33 0 1 4 10 37 8 0 1 100 78 0 623 chain 2956 chr11 135006516 + 60582901 60582947 SVA_F 1814 + 1043 1089 126395 46 chain 3657 chr11 135006516 + 60583173 60583224 SVA_F 1814 + 1040 1091 130496 51 chain 3398 chr11 135006516 + 60590127 60590164 MER5A1 166 + 40 77 217111 37 chain 23277 chr11 135006516 + 60590520 60590819 AluSc 308 + 10 300 114311 47 1 0 209 6 0 23 2 0 11 chain 26775 chr11 135006516 + 60591229 60591772 LTR7B 505 + 0 505 97066 106 1 11 53 19 32 27 27 27 56 98 40 82 21 20 26 2 0 25 chain 4073 chr11 135006516 + 60591528 60591589 LTR7B 505 + 201 284 206284 28 5 27 28 chain 26539 chr11 135006516 + 60614035 60614345 AluSp 311 - 0 310 97885 310 chain 42208 chr11 135006516 + 60631477 60632034 LTR19B 566 + 0 566 66389 107 0 1 318 0 3 61 7 12 12 19 15 23 0 4 10 chain 481904 chr11 135006516 + 60648800 60654689 L1PA5 6144 + 565 6142 7657 284 0 1 319 9 0 54 0 1 1089 2 1 1168 1 5 27 0 1 189 3 2 253 324 0 382 0 11 95 0 3 844 1 0 79 0 2 17 0 3 651 8 9 80 3 0 7 chain 5415 chr11 135006516 + 60661070 60661144 Tigger1 2417 - 44 117 190845 44 1 0 29 chain 25481 chr11 135006516 + 60677178 60677532 THE1B 368 - 0 368 102311 63 0 4 7 1 0 95 5 3 22 8 6 103 6 21 44 chain 13140 chr11 135006516 + 60677532 60677699 LTR45 522 + 349 516 147680 41 0 1 15 1 0 110 chain 3427 chr11 135006516 + 60677710 60677750 MER39 703 - 662 702 216628 40 chain 7425 chr11 135006516 + 60685947 60686035 MSTD 398 - 240 328 174611 88 chain 3431 chr11 135006516 + 60699044 60699087 MIR 256 + 104 147 216543 43 chain 3632 chr11 135006516 + 60770774 60770830 MSTD 398 - 341 398 213113 8 1 0 27 1 3 19 chain 2644 chr11 135006516 + 60790699 60790743 MIR 256 - 140 185 231097 23 4 5 17 chain 7968 chr11 135006516 + 60811045 60811149 DNA1_Mam 279 - 125 228 171233 15 1 0 88 chain 31625 chr11 135006516 + 60838116 60838601 LTR15 485 - 7 485 81440 21 0 1 11 11 8 87 13 5 62 1 5 127 0 2 24 4 0 21 0 1 13 11 11 79 chain 5239 chr11 135006516 + 60844487 60844585 MER3 215 - 1 80 192624 51 11 0 11 4 0 3 3 0 9 1 0 5 chain 187024 chr11 135006516 + 60851846 60853842 L1HS 6032 + 4036 6032 20332 1996 chain 38710 chr11 135006516 + 60861065 60861522 LTR2 463 + 0 463 71137 226 0 5 131 12 13 88 chain 221350 chr11 135006516 + 60862395 60865835 HERVE_a-int 7009 + 135 6989 17793 19 4 1 30 3 1 73 12 7 24 1 0 4 2 1 6 1 0 9 28 22 5 1 0 7 1 0 5 1 0 6 1 0 5 1 0 18 27 0 34 4 2 25 1 0 43 2 1 21 1 0 53 1 0 35 1 0 98 1 0 12 1 0 15 2 1 34 1 0 13 1 0 48 5 3 27 1 0 67 1 0 26 1 0 8 1 0 72 1 0 35 1 0 38 35 0 15 1 0 31 3 9 12 1 0 21 1 0 15 2 1 5 1 0 12 4 0 15 1 0 11 1 0 16 1 0 22 1 0 4 2 1 7 1 0 10 1 0 4 2 1 9 1 0 52 3 1 57 1 0 23 2 1 15 1 0 115 1 0 19 1 0 20 1 0 12 1 0 13 17 15 4 1 0 20 1 0 41 1 0 40 1 0 60 2 1 35 2 1 7 2 1 32 2 1 44 1 0 22 2 1 17 1 0 24 1 0 12 1 0 94 4 3614 239 3 1 102 1 0 15 1 0 3 1 0 52 7 5 20 1 0 11 1 0 81 2 0 135 2 1 23 3 0 22 1 0 30 2 1 10 1 0 16 1 0 5 2 0 7 1 0 36 1 0 22 1 0 47 1 0 4 1 0 27 7 5 55 2 1 9 4 0 26 3 0 54 3 1 27 6 5 25 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 32 25 22 chain 35603 chr11 135006516 + 60865863 60866313 LTR2 463 + 0 463 75408 91 4 15 10 0 1 243 14 15 88 chain 15000 chr11 135006516 + 60910275 60910439 L1PA2 6032 + 5869 6032 141319 18 1 0 145 chain 23746 chr11 135006516 + 60916471 60916760 AluY 311 + 0 285 111795 109 7 3 173 chain 141661 chr11 135006516 + 60933230 60934781 SVA_D 2077 - 0 2071 25872 671 1 490 20 0 40 835 9 0 15 chain 5517 chr11 135006516 + 60947913 60947981 L1MA5 2750 - 1037 1105 189865 68 chain 5594 chr11 135006516 + 60948025 60948122 L1MC1 2226 + 1992 2083 189144 52 19 13 26 chain 5233 chr11 135006516 + 60951040 60951149 MER21A 919 + 25 133 192700 47 27 28 27 2 0 6 chain 5456 chr11 135006516 + 60958382 60958452 MLT1B 390 - 270 340 190457 4 0 1 5 1 0 60 chain 40492 chr11 135006516 + 60958470 60959071 LTR10E 629 - 9 629 68601 50 25 22 14 1 0 158 1 0 50 5 4 25 1 27 96 19 16 31 0 2 125 chain 57106 chr11 135006516 + 60968841 60969648 LTR12D 1347 - 13 942 54465 126 5 9 80 0 97 286 55 43 45 0 2 79 0 31 131 chain 17602 chr11 135006516 + 60987995 60988210 LTR12_ 688 - 0 318 133992 193 0 103 22 chain 17602 chr11 135006516 + 61006821 61007036 LTR12_ 688 - 0 318 133991 193 0 103 22 chain 30558 chr11 135006516 + 61107807 61108125 AluYb8 318 - 0 318 83320 318 chain 154096 chr11 135006516 + 61140396 61144405 MER4-int 2692 + 80 2692 24085 6 0 1 12 2 0 9 0 2 8 7 3 196 14 13 229 0 1 21 0 55 82 6 0 27 0 2 37 0 26 81 6 0 28 0 1 98 0 1 18 641 0 215 954 331 153 1 0 46 22 21 87 9 11 127 319 103 63 0 1 75 1 3 11 3 4 7 0 1 61 0 6 15 1 0 117 0 3 194 chain 21878 chr11 135006516 + 61230283 61230550 AluSp 311 - 34 300 120721 139 7 6 121 chain 18522 chr11 135006516 + 61230561 61231182 MSTA 426 - 38 426 131439 26 309 0 45 4 24 57 2 0 10 7 23 47 20 48 28 0 14 66 chain 4750 chr11 135006516 + 61269671 61269724 MSTB 430 - 377 430 197912 53 chain 11007 chr11 135006516 + 61392356 61392499 MER39 703 + 548 685 156179 78 6 0 59 chain 14859 chr11 135006516 + 61393827 61393985 L1PA2 6032 - 1 159 141759 158 chain 11527 chr11 135006516 + 61400643 61400787 MER1A 529 + 90 234 154190 144 chain 73444 chr11 135006516 + 61422484 61423448 LTR5_Hs 974 - 0 974 46816 103 47 52 22 0 4 137 12 11 177 0 1 177 0 1 289 chain 27989 chr11 135006516 + 61427253 61427603 MER41A 554 + 0 372 93039 93 0 1 28 4 7 118 0 18 107 chain 39494 chr11 135006516 + 61436032 61436896 MER41C 542 + 0 542 70029 49 0 1 66 0 1 48 7 5 254 321 0 17 12 11 90 chain 28557 chr11 135006516 + 61573530 61573837 AluYb8 318 + 0 305 90931 217 2 0 88 chain 13513 chr11 135006516 + 61587191 61587344 L1PA4 6152 - 1 155 146308 7 0 1 146 chain 5521 chr11 135006516 + 61611432 61611517 MER96B 391 + 99 178 189832 7 2 0 5 2 0 24 1 0 37 1 0 6 chain 26975 chr11 135006516 + 61635551 61635854 AluYf5 307 + 0 302 96355 209 1 0 93 chain 16877 chr11 135006516 + 61651701 61651941 L1PA8 5853 + 5612 5849 135897 70 11 8 46 8 7 20 1 0 65 0 2 19 chain 24733 chr11 135006516 + 61688117 61688406 AluSp 311 + 4 293 106259 289 chain 23068 chr11 135006516 + 61689722 61690008 AluSp 311 + 12 294 115311 51 3 1 217 3 1 12 chain 17076 chr11 135006516 + 61695089 61695396 MSTA 426 + 26 383 135387 56 46 78 46 4 0 6 6 10 14 2 0 60 1 21 66 chain 8296 chr11 135006516 + 61705365 61705466 U6 107 + 0 101 169425 101 chain 22708 chr11 135006516 + 61709700 61709945 SVA_F 1814 + 1565 1810 117040 245 chain 12044 chr11 135006516 + 61716353 61716550 L1PA8 5853 + 5688 5853 152010 50 5 4 18 1 0 59 32 2 32 chain 276924 chr11 135006516 + 61753383 61757475 L1PA10 4194 + 394 4150 14824 9 1 0 72 2 1 12 2 0 16 1 0 333 0 1 42 1 0 94 1 2 169 10 18 35 0 1 69 0 1 29 1 0 140 4 7 11 2 1 119 0 11 60 0 2 59 0 2 50 44 0 67 13 7 54 10 8 266 1 2 30 5 6 158 8 0 178 0 1 81 366 0 19 0 7 35 0 4 16 0 27 143 1 2 83 0 21 330 0 8 73 27 23 218 9 7 164 0 4 47 0 2 265 3 0 34 chain 23546 chr11 135006516 + 61771606 61771908 AluSg7 307 - 7 307 112876 87 2 0 7 1 2 65 8 7 132 chain 24120 chr11 135006516 + 61781542 61781867 MER41B 635 + 10 339 109641 117 1 2 83 4 5 48 0 1 20 0 1 52 chain 89345 chr11 135006516 + 61783767 61784777 LTR13 1007 + 0 1007 39865 304 1 0 395 2 0 308 chain 31534 chr11 135006516 + 61794253 61794691 MER51E 476 - 0 431 81593 61 16 9 102 23 22 176 0 1 60 chain 25489 chr11 135006516 + 61796497 61796784 AluSp 311 - 14 301 102275 287 chain 70854 chr11 135006516 + 61803472 61806840 L1MA3 4352 - 0 2135 47988 22 6 2 14 9 8 18 1 0 5 2 1 22 2 0 29 3 0 19 0 8 36 2305 1067 54 0 8 315 3 2 26 0 1 15 0 2 95 2 1 14 0 2 49 5 0 147 0 4 53 1 0 96 chain 53447 chr11 135006516 + 61812092 61813264 MER4E 760 - 16 760 56725 95 414 0 118 1 0 99 1 0 61 0 2 25 36 18 149 23 26 127 0 1 23 chain 18959 chr11 135006516 + 61831713 61832155 MER21A 919 - 522 899 130207 64 45 45 75 100 48 10 12 0 29 2 0 23 7 8 75 chain 4321 chr11 135006516 + 61838144 61838190 MADE1 96 - 0 46 202955 46 chain 147581 chr11 135006516 + 61856380 61858708 MER4-int 2692 + 1 2025 24946 10 1 0 25 2 0 63 2 0 5 14 15 183 0 1 82 6 4 161 6 15 68 0 5 87 10 0 72 0 5 56 0 1 33 10 4 23 0 1 87 0 1 178 7 10 281 1 6 22 10 5 79 308 0 191 2 0 103 0 1 7 0 2 13 6 5 114 chain 21490 chr11 135006516 + 61871773 61872084 THE1C 375 + 10 320 122179 121 4 8 40 24 19 122 chain 3173 chr11 135006516 + 61874173 61874211 Charlie18a 321 + 60 98 221513 38 chain 4372 chr11 135006516 + 61886837 61886888 MER67C 710 - 436 487 202296 51 chain 10508 chr11 135006516 + 61924730 61924858 LTR8 732 + 587 715 158212 128 chain 376853 chr11 135006516 + 61925796 61930388 L1PA7 6471 + 1827 6461 10850 145 1 6 159 1 0 26 0 4 220 5 6 32 4 3 204 0 1 71 0 4 194 0 1 193 0 4 41 0 1 5 2 1 67 1 5 44 1 4 153 0 1 62 1 2 5 1 0 6 2 0 17 0 1 110 0 12 244 19 10 319 0 2 45 0 1 409 0 4 577 0 1 115 4 5 248 1 0 81 0 2 93 0 2 56 5 7 603 chain 7483 chr11 135006516 + 61944842 61945027 L1MA6 2487 - 317 526 174247 61 9 12 27 13 9 16 12 31 11 1 0 4 12 19 19 chain 50014 chr11 135006516 + 61952709 61953296 LTR14C 587 - 0 587 59007 587 chain 74496 chr11 135006516 + 61962131 61963100 LTR5_Hs 974 + 0 974 46278 175 1 0 114 0 1 179 1 2 185 1 0 72 0 2 6 2 0 83 8 15 19 20 18 103 chain 77724 chr11 135006516 + 61964745 61965679 L1PA7 6471 - 4 966 44648 8 2 0 27 0 1 299 0 1 500 0 10 81 0 18 17 chain 80307 chr11 135006516 + 61983420 61984398 LTR5B 1012 + 1 997 43470 13 0 2 112 0 15 203 1 2 126 0 1 37 3 8 58 8 0 160 1 2 228 0 1 28 chain 26416 chr11 135006516 + 61994937 61995291 MER61-int 3695 + 741 1149 98355 77 0 49 74 12 13 39 0 4 152 chain 79812 chr11 135006516 + 62001470 62002675 L1PB1 5432 + 4218 5422 43677 78 0 7 207 1 5 12 0 4 95 3 0 77 0 2 99 1 2 129 0 9 112 0 1 45 1 0 14 8 13 5 1 0 12 1 0 10 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 1 0 15 11 0 31 7 4 12 7 5 24 1 0 19 1 0 13 1 0 18 chain 68068 chr11 135006516 + 62007193 62007954 L1P1 4361 - 592 1353 49212 761 chain 8908 chr11 135006516 + 62007954 62008058 L1P1 4361 + 3770 3874 166092 104 chain 53626 chr11 135006516 + 62008074 62008671 L1PA4 6152 + 5546 6143 56604 597 chain 28377 chr11 135006516 + 62019255 62019653 LTR3 431 + 27 422 91671 231 3 0 113 0 6 9 21 15 21 chain 16752 chr11 135006516 + 62021583 62021782 LTR3A 482 - 257 456 136249 199 chain 54741 chr11 135006516 + 62044053 62045131 MER61-int 3695 - 2716 3461 55877 337 4 0 112 318 4 115 15 1 138 13 12 26 chain 161838 chr11 135006516 + 62045430 62047760 SVA_F 1814 + 10 1788 23086 817 226 0 28 1 0 19 50 0 13 0 1 59 0 15 143 147 0 65 1 0 17 1 0 83 142 0 518 chain 9814 chr11 135006516 + 62046320 62046473 SVA_F 1814 + 850 1067 83201 5 1 0 31 0 2 10 1 0 11 7 71 87 chain 3207 chr11 135006516 + 62046521 62046571 SVA_F 1814 + 1115 1164 83201 23 2 1 25 chain 2231 chr11 135006516 + 62046826 62046884 SVA_F 1814 + 855 914 148095 29 0 1 29 chain 12767 chr11 135006516 + 62047100 62047241 SVA_F 1814 + 1094 1232 126274 76 1 0 11 2 0 51 chain 35755 chr11 135006516 + 62053149 62053645 LTR10D 510 + 2 510 75198 67 10 5 4 0 1 70 0 17 63 2 0 5 0 1 4 1 0 4 0 3 173 2 0 91 chain 346484 chr11 135006516 + 62056421 62060298 L1PA4 6152 + 2261 6143 11710 1727 0 1 359 0 4 1791 chain 2788 chr11 135006516 + 62069980 62070012 HUERS-P3b-int 2065 + 541 573 228908 32 chain 329785 chr11 135006516 + 62070450 62074572 L1P3 4156 - 18 4137 12211 23 2 1 7 2 0 274 0 1 80 4 7 584 1 0 428 5 15 14 0 1 65 0 1 92 1 0 27 0 2 225 0 1 32 1 0 48 0 2 184 0 4 461 20 0 321 0 4 504 0 1 328 7 1 70 14 13 66 1 0 163 0 1 68 chain 28111 chr11 135006516 + 62076433 62076880 L1MA2 4263 - 155 591 92600 4 1 0 27 0 1 11 13 7 92 1 0 8 1 0 15 14 15 116 26 23 90 1 0 27 chain 37082 chr11 135006516 + 62093265 62093739 LTR2B 499 + 9 499 73413 5 1 0 57 3 0 40 0 19 178 0 1 8 1 0 69 0 1 112 chain 81958 chr11 135006516 + 62094071 62095038 LTR5_Hs 974 + 0 974 42780 13 10 14 432 0 4 448 1 0 63 chain 16396 chr11 135006516 + 62101215 62101408 LTR1 825 - 632 825 137217 193 chain 24400 chr11 135006516 + 62104373 62104664 AluSp 311 - 15 305 108073 273 1 0 17 chain 21221 chr11 135006516 + 62106131 62106433 AluSx1 309 + 6 308 123140 93 0 1 32 13 3 102 0 10 28 1 3 21 3 0 9 chain 18465 chr11 135006516 + 62106527 62106861 MER4D1 891 - 414 770 131599 19 6 28 20 7 6 55 41 35 17 2 6 75 0 2 24 0 2 41 1 0 26 chain 42766 chr11 135006516 + 62109383 62109968 LTR10C 591 - 0 591 65696 39 51 53 452 0 4 43 chain 9602 chr11 135006516 + 62115429 62115656 MER2B 336 + 85 287 162586 22 9 15 20 78 47 98 chain 42258 chr11 135006516 + 62117117 62117650 MER41A 554 - 13 553 66321 113 0 1 15 0 4 145 1 7 180 5 1 74 chain 61747 chr11 135006516 + 62123094 62123754 SVA_D 2077 - 0 660 52013 660 chain 71463 chr11 135006516 + 62135962 62136923 LTR5_Hs 974 - 0 974 47711 95 0 3 93 7 7 63 0 2 40 1 2 9 1 2 10 2 0 5 0 2 111 1 0 67 0 4 239 2 0 67 8 9 132 0 4 8 chain 486817 chr11 135006516 + 62137681 62149401 HERVK-int 6823 - 228 6823 7489 8 5 0 11 5 0 7 1 0 7 2 1 15 35 26 12 1 0 4 10 9 13 1 0 9 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 25 5 3 13 3 1 14 1 0 12 2 0 9 241 159 24 1 0 7 3 1 71 1 0 6 1 0 8 1 0 4 3 0 51 1 0 40 0 1 4 4560 0 78 1 0 35 1 0 94 1 2 4 1 0 23 1 0 41 305 0 48 7 0 108 15 13 123 0 2 119 0 3 1856 0 15 681 25 8 59 1 6 23 1 2 213 0 1 464 0 1 40 19 18 45 1 0 7 41 33 336 8 7 55 1 0 377 5 4 40 0 9 252 89 1 8 1 0 19 1 0 24 11 9 152 14 6 42 1 0 60 3 0 74 0 11 7 12 1 85 1 0 20 0 1 63 2 0 12 1 0 20 6 5 22 1 0 6 11 10 16 6 5 18 4 2 12 1 0 5 chain 61340 chr11 135006516 + 62149672 62150563 LTR5_Hs 974 - 77 974 52179 66 1 7 7 6 0 34 10 11 92 0 1 4 10 17 11 2 0 5 4 16 163 0 4 43 23 0 259 10 13 9 0 1 118 0 2 14 chain 13062 chr11 135006516 + 62153806 62154082 MER44A 345 + 109 345 147984 53 0 8 6 0 2 61 95 45 61 chain 24433 chr11 135006516 + 62182532 62182846 AluSp 311 - 1 311 107898 19 2 0 140 0 3 6 13 8 134 chain 26090 chr11 135006516 + 62202886 62203184 AluYf4 310 - 14 310 99666 133 1 0 37 1 0 126 chain 10088 chr11 135006516 + 62238946 62239120 Tigger4b 360 - 175 360 160145 40 3 14 73 1 0 4 0 1 9 3 10 11 10 3 20 chain 80063 chr11 135006516 + 62242981 62244789 HSMAR1 1287 + 0 1248 43558 20 6 7 21 1 2 45 319 13 88 1 2 75 1 4 51 263 2 38 19 17 25 14 17 39 22 23 72 21 6 13 0 3 95 1 6 10 7 4 58 0 4 128 2 3 53 1 5 299 chain 4492 chr11 135006516 + 62253609 62253665 L1MB3 1562 + 1357 1413 200875 56 chain 23342 chr11 135006516 + 62325696 62325972 AluYc 301 + 10 286 113969 110 0 2 94 1 0 50 1 0 20 chain 53070 chr11 135006516 + 62329210 62329853 LTR6A 649 + 3 649 56971 41 1 2 59 2 0 96 1 0 115 0 1 17 0 1 48 0 2 50 1 0 139 4 5 6 0 1 63 chain 19840 chr11 135006516 + 62335465 62335710 AluY 311 + 46 295 127681 78 0 2 142 1 3 24 chain 24639 chr11 135006516 + 62336170 62336460 AluSq10 312 + 8 298 106792 290 chain 21485 chr11 135006516 + 62353318 62353593 AluSp 311 + 20 285 122200 68 0 6 144 16 0 47 chain 24244 chr11 135006516 + 62354661 62354941 AluSp 311 - 20 300 108970 280 chain 29921 chr11 135006516 + 62421397 62421708 AluYb8 318 - 7 318 85042 311 chain 23447 chr11 135006516 + 62438093 62438399 AluY 311 + 1 298 113391 51 10 1 79 0 1 122 0 1 31 2 0 11 chain 23965 chr11 135006516 + 62470353 62470636 AluSp 311 + 13 296 110539 283 chain 23532 chr11 135006516 + 62502369 62502654 AluSp 311 - 13 300 112950 170 0 1 33 0 1 82 chain 19019 chr11 135006516 + 62514665 62514943 AluSp 311 + 25 288 130067 31 1 0 5 0 3 68 11 7 14 0 1 84 16 0 42 0 2 6 chain 25581 chr11 135006516 + 62518079 62518379 AluY 311 + 8 311 101819 124 0 1 134 0 2 42 chain 3854 chr11 135006516 + 62586363 62586409 L1MEf 1413 + 946 992 209566 46 chain 25301 chr11 135006516 + 62607674 62607968 AluY 311 + 5 300 103222 126 3 0 134 0 4 31 chain 13043 chr11 135006516 + 62609107 62609277 U2 167 - 3 167 148065 22 6 2 10 2 0 130 chain 72565 chr11 135006516 + 62625989 62626948 LTR5_Hs 974 - 0 974 47235 62 1 0 5 0 1 7 0 2 26 20 18 19 8 15 163 1 0 188 0 1 177 0 1 120 1 0 41 5 13 115 chain 24313 chr11 135006516 + 62636736 62637021 AluY 311 + 22 308 108588 110 0 1 175 chain 24153 chr11 135006516 + 62725478 62725757 AluSp 311 - 21 300 109461 279 chain 25950 chr11 135006516 + 62729599 62729896 AluSp 311 + 12 309 100211 297 chain 5917 chr11 135006516 + 62780482 62780552 MIR 256 + 59 129 186019 70 chain 34803 chr11 135006516 + 62795162 62795577 THE1B-int 1605 - 0 414 76471 197 1 0 217 chain 47360 chr11 135006516 + 62796060 62796809 L1PB1 5432 - 10 729 60926 18 8 7 5 1 0 22 2 1 21 2 0 19 10 7 25 14 1 16 1 0 44 1 0 66 18 12 12 1 0 8 1 0 24 3 0 6 4 5 134 0 4 167 1 0 95 chain 5925 chr11 135006516 + 62799835 62799903 MLT1C 463 - 52 120 185944 68 chain 535896 chr11 135006516 + 62803791 62809899 L1PA5 6144 - 0 6144 3458 994 0 2 1036 5 6 886 0 13 333 0 15 358 0 2 572 1 2 1036 1 2 163 0 1 723 chain 77126 chr11 135006516 + 62816935 62818956 L1PA14 3548 - 83 1205 44901 7 6 0 41 1 0 19 7 5 11 7 5 34 18 13 109 6 5 79 1 0 6 2 0 11 10 6 20 0 4 85 2 0 4 2 0 48 2 0 11 7 4 127 873 3 120 1 0 148 4 3 8 1 3 183 chain 9124 chr11 135006516 + 62819459 62819569 L1PREC2 3366 - 1118 1228 164953 110 chain 43937 chr11 135006516 + 62825293 62825856 THE1B-int 1605 - 6 571 64286 6 0 1 5 1 0 179 5 7 367 chain 373067 chr11 135006516 + 62825904 62831229 L1PA3long 6157 - 0 4722 10993 1524 1 0 134 4 8 88 0 1 142 0 1 552 8 12 7 5 0 162 5 6 337 5 3 157 0 9 62 0 1 13 309 0 188 4 3 401 24 20 118 0 2 9 36 33 236 307 4 181 0 2 306 chain 36030 chr11 135006516 + 62832089 62832614 L1PB 1623 - 871 1499 74860 243 0 1 23 1 0 52 6 78 79 8 7 78 8 40 27 chain 168398 chr11 135006516 + 62832782 62834677 L1PA5 6144 - 3 1900 22237 831 0 2 1064 chain 19869 chr11 135006516 + 62836705 62836994 L1PA16 3655 + 3093 3379 127594 111 1 0 74 29 27 74 chain 29068 chr11 135006516 + 62839655 62840026 HSMAR2 1300 - 509 879 88684 23 5 4 343 chain 550646 chr11 135006516 + 62840427 62846575 L1PA3long 6157 - 0 6151 1356 2865 1 0 189 0 2 310 0 2 267 0 1 1075 1 0 546 1 2 581 1 0 311 chain 20868 chr11 135006516 + 62853461 62853819 L1PA15 4387 + 3967 4314 124400 121 1 0 12 20 19 11 1 0 55 1 0 14 28 24 44 6 3 44 chain 108006 chr11 135006516 + 62861466 62862679 L1PA4 6152 - 2 1230 34711 295 0 11 877 0 4 41 chain 75670 chr11 135006516 + 62864567 62865551 L1PA8 5853 + 4870 5847 45678 68 7 0 71 1 0 73 0 2 153 2 6 144 0 8 144 13 7 18 1 0 48 2 0 67 1 0 14 1 0 49 2 1 17 1 0 87 chain 104604 chr11 135006516 + 62873405 62876288 L1PA4 6152 - 1 2886 14795 259 1 0 334 2 1 8 1 6 420 1 0 219 1 0 425 3 2 787 0 2 122 0 1 49 1 2 80 2 0 168 chain 330685 chr11 135006516 + 62876320 62879973 L1PA3long 6157 - 0 3653 12176 3443 1 6 5 5 0 199 chain 38787 chr11 135006516 + 62879976 62881045 L1PA4 6152 - 2892 4322 14795 88 1 2 99 0 882 61 521 0 269 1 0 29 chain 20483 chr11 135006516 + 62880231 62880507 AluY 311 + 28 306 125668 95 1 0 135 9 12 36 chain 22186 chr11 135006516 + 62887691 62887935 L1PA2 6032 + 5785 6029 119420 244 chain 21617 chr11 135006516 + 62889117 62889359 L1PA3long 6157 - 5 246 121704 148 1 0 93 chain 34349 chr11 135006516 + 62892205 62892590 L1PA3long 6157 + 5777 6157 77129 374 5 0 6 chain 149680 chr11 135006516 + 62892635 62894459 L1PA7 6471 - 5 1837 24666 513 21 22 140 1 0 169 2 0 197 0 1 619 0 2 20 0 7 142 chain 231927 chr11 135006516 + 62894463 62898299 L1PA6 6164 - 10 2849 17204 799 0 1 28 0 13 149 1012 0 41 0 1 67 0 1 364 11 12 29 2 0 383 0 1 10 0 1 556 1 3 373 4 0 7 chain 66539 chr11 135006516 + 62895445 62896451 LTR13 1007 + 0 1007 49851 68 6 0 254 77 78 51 0 1 178 1 0 56 8 1 11 1 0 4 1 15 24 0 1 70 5 6 138 29 27 24 chain 50518 chr11 135006516 + 62904680 62905828 HUERS-P1-int 2401 + 151 1118 58637 15 9 4 31 9 0 4 48 0 24 2 1 10 14 9 28 4 0 14 121 68 13 1 0 13 2 0 43 3 0 7 1 0 13 0 1 21 1 0 11 2 0 24 2 0 7 16 0 18 31 19 16 9 6 24 2 1 96 6 0 23 4 8 28 0 1 75 11 3 15 1 0 159 2 1 14 2 1 5 2 0 43 28 29 21 chain 12975 chr11 135006516 + 62910458 62910656 HSMAR1 1287 + 1072 1282 148332 23 8 20 30 0 1 110 12 11 15 chain 127107 chr11 135006516 + 62918978 62920523 L1PA7 6471 - 1 1559 28787 152 4 0 6 1 5 438 0 1 246 2 0 36 0 9 190 10 1 343 0 14 117 chain 60684 chr11 135006516 + 62926524 62929966 L1MA2 4263 - 150 1069 52479 9 1 0 32 2 0 14 7 0 83 19 17 53 2513 2 46 1 0 51 3 0 142 7 6 54 20 20 10 0 1 336 0 4 39 chain 442533 chr11 135006516 + 62934964 62940855 L1PA8 5853 + 50 5853 8978 22 2 0 10 1 0 13 53 14 100 1 2 94 0 4 300 1 0 5 0 1 42 2 1 4 0 1 130 7 8 168 1 2 178 0 1 271 1 0 128 2 1 279 0 1 75 0 2 110 0 1 256 6 10 56 3 1 147 1 0 217 1 2 100 4 1 66 8 9 184 3 4 11 0 1 130 2 3 262 0 1 163 0 1 11 0 2 5 1 0 249 0 4 385 0 2 60 14 15 65 0 1 69 5 15 397 1 2 58 0 1 22 1 6 150 89 8 98 0 1 80 4 3 212 1 0 28 25 23 63 2 1 60 7 6 15 1 0 93 chain 32058 chr11 135006516 + 62941375 62941772 L1PA7 6471 - 1 398 80763 260 8 10 16 2 0 111 chain 21331 chr11 135006516 + 62948746 62949004 L1PA4 6152 - 4 290 122749 34 1 28 105 1 2 117 chain 33288 chr11 135006516 + 62952619 62952994 L1PA4 6152 - 9 384 78748 375 chain 499415 chr11 135006516 + 62953021 62959166 L1PA2 6032 - 10 6032 6867 5 3 0 1972 1 2 1541 0 1 311 0 1 1067 2 1 195 5 4 144 129 1 60 0 7 131 0 1 264 11 12 39 12 11 85 14 13 154 chain 453749 chr11 135006516 + 62960746 62966197 L1PA6 6164 + 606 6162 8628 159 0 1 373 1 2 550 0 1 19 0 5 42 0 94 200 0 1 272 37 0 141 2 0 715 7 10 512 3 1 591 0 1 604 3 35 534 0 1 358 0 4 158 0 2 170 chain 325249 chr11 135006516 + 62969319 62973457 L1P3 4156 + 0 4139 12379 242 20 19 58 2 1 89 6 1 61 2 0 244 11 8 671 0 3 1231 0 6 40 7 0 668 0 8 7 23 15 95 0 2 8 6 7 34 0 1 22 0 4 439 17 23 100 2 0 7 2 1 24 chain 41806 chr11 135006516 + 62975045 62975529 LTR15 485 + 0 484 66888 484 chain 108340 chr11 135006516 + 62979059 62980274 L1PA4 6152 + 4910 6141 34607 655 0 1 435 0 1 16 0 14 109 chain 43756 chr11 135006516 + 62981867 62982352 LTR15 485 + 0 485 64501 485 chain 59808 chr11 135006516 + 62982358 62983062 L1PA7 6471 + 5764 6468 52926 704 chain 161585 chr11 135006516 + 62998130 63000000 L1PA5 6144 - 6 1895 23115 839 1 5 77 0 1 4 1 0 102 0 15 846 chain 367095 chr11 135006516 + 63000000 63004270 L1P1 4361 - 112 4360 11186 97 2 1 694 4 3 742 1 0 961 0 2 51 8 0 264 1 0 203 0 1 149 0 1 950 14 0 129 chain 8365 chr11 135006516 + 63004557 63004666 L1PA16 3655 + 3484 3590 169045 94 3 0 12 chain 11387 chr11 135006516 + 63010075 63010206 MLT2A2 560 - 425 554 154755 88 2 0 41 chain 23946 chr11 135006516 + 63012963 63013235 L1PA4 6152 - 0 273 110645 8 0 1 264 chain 20389 chr11 135006516 + 63015011 63015302 AluSp 311 + 11 297 125932 22 1 0 99 2 1 131 16 13 20 chain 16963 chr11 135006516 + 63019262 63019558 L1PB 1623 + 1241 1525 135689 60 11 9 129 0 1 6 1 0 7 3 2 29 26 18 13 1 0 10 chain 194262 chr11 135006516 + 63020144 63022679 L1P2 5180 + 1763 4336 19650 84 6 4 174 0 1 228 29 76 245 0 4 545 26 10 48 2 1 157 0 1 510 1 3 214 0 1 90 0 1 176 chain 68594 chr11 135006516 + 63022679 63023496 L1PA4 6152 - 1 824 48951 172 1 3 591 0 1 5 0 2 13 0 1 35 chain 8430 chr11 135006516 + 63035172 63035280 MLT1B 390 - 0 109 168685 21 0 1 87 chain 102619 chr11 135006516 + 63038796 63039934 L1PA4 6152 - 1 1138 36102 1122 1 0 15 chain 28882 chr11 135006516 + 63049681 63050020 L1PA4 6152 - 2 338 89530 6 4 0 325 0 1 4 chain 293005 chr11 135006516 + 63052203 63055822 L1PA7 6471 + 2833 6470 13824 71 0 2 392 15 14 147 0 1 95 16 19 409 7 8 7 6 0 494 0 1 4 1 0 63 2 5 41 0 1 63 0 8 267 5 4 175 5 0 7 0 5 466 0 1 22 0 2 223 2 3 285 0 1 13 0 1 292 0 1 24 chain 6439 chr11 135006516 + 63059877 63059970 L1PREC2 3366 - 631 724 181722 17 3 0 6 0 3 67 chain 16042 chr11 135006516 + 63079395 63079590 LTR14A 344 - 0 193 138242 104 0 1 78 3 0 10 chain 64190 chr11 135006516 + 63079629 63080465 MER11C 1089 - 16 864 50920 293 8 10 32 0 1 45 5 9 362 0 4 66 8 9 17 chain 527944 chr11 135006516 + 63080472 63086597 L1PA4 6152 + 9 6146 4409 571 1 0 119 7 0 1142 1 6 594 4 0 1121 0 7 77 1 0 662 0 1 49 0 2 52 0 1 72 0 2 273 0 1 65 0 1 1183 0 1 27 0 1 5 0 3 99 chain 18838 chr11 135006516 + 63088029 63088337 L1PA10 4194 - 3270 3580 130553 66 0 1 41 57 58 144 chain 518701 chr11 135006516 + 63095568 63101740 L1PA5 6144 - 2 6141 5307 144 1 2 42 0 1 147 0 1 1043 3 2 409 0 4 319 0 1 78 0 2 265 0 1 904 0 4 749 1 3 52 1 4 538 63 10 378 0 1 831 1 0 4 12 13 187 chain 108897 chr11 135006516 + 63105201 63106409 L1PA3long 6157 + 4933 6141 34462 1208 chain 15104 chr11 135006516 + 63106519 63108310 L1PA4 6152 - 899 2690 17460 1791 chain 6201 chr11 135006516 + 63108320 63108391 L1PA4 6152 + 5268 5339 183569 71 chain 71503 chr11 135006516 + 63108391 63109197 L1PA4 6152 + 5341 6152 47696 800 0 5 6 chain 536004 chr11 135006516 + 63111895 63117908 L1PA3long 6157 - 0 6157 3445 620 0 1 222 0 4 669 0 1 290 0 9 3295 1 2 140 0 128 61 1 0 559 2 3 153 chain 44524 chr11 135006516 + 63127768 63128303 L1PA6 6164 - 2 530 63552 6 6 0 324 1 0 198 chain 35721 chr11 135006516 + 63131136 63131530 L1PA3long 6157 + 5762 6156 75240 394 chain 10634 chr11 135006516 + 63132222 63133483 L1PA4 6152 - 2690 3950 17460 285 1 0 975 chain 42690 chr11 135006516 + 63133485 63133960 L1PA4 6152 + 3724 4199 65789 475 chain 172140 chr11 135006516 + 63133960 63135901 L1PA4 6152 + 4200 6141 21797 212 0 1 971 1 0 757 chain 33394 chr11 135006516 + 63135910 63136283 L1PA4 6152 + 5768 6141 78578 373 chain 134396 chr11 135006516 + 63152724 63154594 L1PA10 4194 - 58 1827 27132 19 3 0 720 0 1 8 0 1 126 1 2 34 1 0 6 0 1 110 18 9 143 32 5 23 10 14 281 3 4 16 81 11 235 chain 133881 chr11 135006516 + 63156650 63158292 L1PA8 5853 - 0 1625 27246 93 1 0 19 2 1 61 2 1 70 2 0 44 1 0 480 0 2 73 1 4 542 16 0 235 chain 4093 chr11 135006516 + 63171928 63171971 L1P1 4361 - 96 139 206032 43 chain 14240 chr11 135006516 + 63176810 63176999 MER30 238 - 0 202 143758 114 4 17 71 chain 40970 chr11 135006516 + 63178360 63178908 MLT2A2 560 - 0 560 67956 21 17 25 9 8 0 14 0 1 77 3 14 399 chain 26764 chr11 135006516 + 63180313 63180694 THE1C 375 - 0 375 97110 177 6 0 13 6 9 46 0 1 4 14 10 115 chain 535336 chr11 135006516 + 63186203 63192391 L1PA4 6152 + 12 6151 3544 568 1 0 246 10 12 1362 0 2 962 2 1 318 1 15 16 46 7 475 0 3 136 0 1 635 32 1 538 0 2 500 1 0 339 chain 194072 chr11 135006516 + 63195265 63197914 L1P2 5180 + 2 2737 19667 148 2 1 49 1 0 44 8 7 196 19 0 68 1 0 44 7 6 117 13 14 87 0 15 47 13 0 167 2 1 52 8 9 161 0 2 37 8 9 192 18 20 43 0 1 316 0 1 32 0 1 84 0 1 353 9 10 30 1 98 272 chain 170908 chr11 135006516 + 63197919 63202761 L1PA7 6471 + 5 5310 9413 131 59 45 51 138 335 15 27 26 40 0 19 50 9 18 38 105 181 36 27 161 79 0 4 12 0 25 176 46 55 65 51 52 1020 1 2 57 1 2 1300 3 0 5 0 5 421 3 0 143 1 0 314 0 1 393 0 3 25 chain 549098 chr11 135006516 + 63202775 63208798 L1PA2 6032 + 0 6031 1567 703 0 8 1805 0 1 2465 0 1 1041 2 0 7 chain 40874 chr11 135006516 + 63208808 63209966 L1PA7 6471 + 5310 6469 9413 39 1 0 275 0 2 843 chain 26958 chr11 135006516 + 63212062 63212350 AluYa5 310 - 2 290 96416 288 chain 232529 chr11 135006516 + 63217254 63220106 L1PA8 5853 - 0 2847 17170 93 1 0 19 2 1 47 1 0 14 1 0 61 0 4 6 2 0 46 1 0 552 2 0 4 0 1 144 0 1 29 11 3 643 0 5 380 0 1 4 10 9 243 5 6 531 chain 266923 chr11 135006516 + 63220564 63224421 HERVH-int 3825 + 0 3825 15340 277 13 15 41 2 1 31 14 15 35 46 60 10 3 0 50 48 215 29 1 0 64 0 3 26 422 0 352 8 1 62 1 0 492 0 1 306 8 13 1019 39 249 458 chain 26938 chr11 135006516 + 63221259 63221660 LTR7 482 + 0 469 96495 50 27 65 33 0 1 4 1 0 71 0 1 22 0 31 34 3 0 53 1 2 102 chain 28993 chr11 135006516 + 63226528 63226966 LTR7 482 + 0 469 89018 86 0 50 13 5 0 33 51 0 48 0 31 121 0 2 37 0 4 44 chain 39598 chr11 135006516 + 63249104 63249539 L1PA4 6152 + 5717 6152 69891 435 chain 180518 chr11 135006516 + 63251330 63253849 L1PB1 5432 + 2514 5061 20941 72 2 0 5 0 5 73 2 23 96 1 2 30 3 0 5 19 9 55 22 25 92 3 2 531 0 3 42 0 1 123 13 15 62 0 3 145 0 8 17 2 1 199 6 10 12 0 1 30 3 4 380 14 10 109 1 0 44 9 6 20 0 1 21 1 0 255 chain 17104 chr11 135006516 + 63256035 63256261 MER30 238 + 0 237 135301 107 5 16 114 chain 52499 chr11 135006516 + 63267044 63267635 LTR10C 591 + 0 591 57305 591 chain 56519 chr11 135006516 + 63268531 63269632 MER4E1 777 + 0 777 54840 24 0 1 17 1 5 267 2 0 15 5 24 83 0 1 14 0 1 5 1 0 85 2 0 8 6 0 26 343 0 120 0 2 54 0 2 23 chain 23105 chr11 135006516 + 63287719 63288557 THE1B 368 + 0 346 115115 44 0 15 113 530 23 11 0 1 86 1 0 53 chain 34083 chr11 135006516 + 63290689 63291149 LTR3A 482 + 0 482 77494 193 1 15 26 0 13 101 0 1 46 1 2 9 7 0 76 chain 33009 chr11 135006516 + 63292189 63292572 L1PA4 6152 + 3555 3940 79199 116 5 8 5 1 0 256 chain 199987 chr11 135006516 + 63292572 63294804 L1PA4 6152 + 3941 6151 19213 1544 21 0 517 1 0 149 chain 74118 chr11 135006516 + 63295442 63296410 LTR5_Hs 974 - 0 974 46450 62 1 0 5 0 1 35 20 18 19 8 15 163 1 0 166 11 11 11 0 1 177 0 1 289 chain 36334 chr11 135006516 + 63296790 63297240 LTR7 482 - 0 482 74459 49 12 14 125 0 31 56 1 0 207 chain 74904 chr11 135006516 + 63297785 63298753 LTR5_Hs 974 - 0 974 46059 103 47 52 163 1 0 188 0 1 177 0 1 289 chain 5538 chr11 135006516 + 63302207 63302277 MER21C 908 - 721 791 189688 70 chain 129625 chr11 135006516 + 63317494 63319060 LTR12C 1709 + 0 1709 28173 436 0 1 137 0 1 116 0 159 262 1 0 5 3 1 106 0 4 16 24 5 460 chain 8211 chr11 135006516 + 63328647 63328770 L1PB1 5432 + 5162 5281 169881 6 2 0 52 2 1 15 1 0 45 chain 124038 chr11 135006516 + 63345975 63347346 L1PA4 6152 + 4771 6143 29689 523 1 0 61 0 1 541 0 1 245 chain 72867 chr11 135006516 + 63348323 63349365 MER11A 1151 + 9 1151 47086 14 25 26 28 0 8 111 1 0 34 0 4 60 0 11 227 0 12 98 0 1 39 6 9 11 3 4 37 0 4 68 5 6 13 3 61 95 9 8 89 1 0 25 1 0 39 chain 9464 chr11 135006516 + 63354745 63355000 HAL1 992 + 301 535 163251 15 1 0 4 101 86 42 4 0 64 1 0 23 chain 21508 chr11 135006516 + 63363825 63364113 MER1A 529 - 0 287 122115 63 8 6 169 8 9 40 chain 11751 chr11 135006516 + 63364621 63365084 THE1D 372 + 224 372 153257 88 315 0 60 chain 3933 chr11 135006516 + 63378748 63379028 MER97c 529 + 18 299 208371 23 48 46 24 84 81 28 58 64 15 chain 27027 chr11 135006516 + 63384173 63384467 AluYf4 310 + 0 294 96195 294 chain 29114 chr11 135006516 + 63384516 63385000 LTR61 567 - 67 567 88484 84 3 0 50 12 0 50 1 0 21 17 62 25 0 1 4 18 19 90 3 0 28 17 11 33 6 0 22 chain 3966 chr11 135006516 + 63385009 63385056 MER34 540 + 418 465 207894 47 chain 24233 chr11 135006516 + 63407406 63407696 AluSp 311 - 18 311 109031 256 0 3 34 chain 23698 chr11 135006516 + 63414675 63414954 AluSp 311 - 18 301 112044 58 1 5 220 chain 9392 chr11 135006516 + 63427409 63427511 L1PA3long 6157 + 6055 6157 163606 102 chain 3982 chr11 135006516 + 63434452 63434522 Tigger7 736 + 82 150 207662 34 1 0 6 5 4 24 chain 20452 chr11 135006516 + 63500654 63500946 AluSc8 310 + 11 270 125751 35 1 0 7 41 6 73 0 3 135 chain 17934 chr11 135006516 + 63522200 63522416 AluYc3 301 + 71 290 133021 49 0 1 134 1 3 32 chain 24169 chr11 135006516 + 63522845 63523149 AluSp 311 + 10 308 109381 101 6 0 197 chain 46056 chr11 135006516 + 63558611 63559542 LTR10E 629 + 0 626 61991 15 5 4 53 305 0 92 0 2 60 0 2 68 2 1 82 1 0 182 23 21 39 0 1 4 chain 23639 chr11 135006516 + 63566365 63566657 AluSg7 307 - 14 305 112363 81 9 8 202 chain 28490 chr11 135006516 + 63588081 63588382 AluYg6 310 + 0 301 91227 301 chain 4933 chr11 135006516 + 63650066 63650123 U6 107 - 8 65 195891 57 chain 33468 chr11 135006516 + 63736837 63737275 MLT2A1 477 - 0 477 78461 6 0 4 43 3 39 215 8 5 57 0 2 106 chain 9663 chr11 135006516 + 63737941 63738048 U6 107 + 0 107 162278 107 chain 8776 chr11 135006516 + 63813288 63813393 AluJr 308 + 12 117 166787 105 chain 2942 chr11 135006516 + 63830686 63830719 MIR 256 + 96 129 226274 33 chain 3206 chr11 135006516 + 63860381 63860417 MER103C 291 + 133 169 220851 36 chain 23971 chr11 135006516 + 63875521 63875803 AluSp 311 + 18 300 110499 282 chain 166692 chr11 135006516 + 63938219 63940909 SVA_F 1814 - 0 1805 22433 540 596 0 308 3 18 48 304 0 891 chain 11188 chr11 135006516 + 63938764 63939036 SVA_F 1814 - 582 849 76533 51 1 0 11 1 0 159 1 0 10 2 0 36 chain 7296 chr11 135006516 + 63939036 63939117 SVA_F 1814 - 722 803 153808 81 chain 1084 chr11 135006516 + 63939129 63939173 SVA_F 1814 - 877 921 171940 44 chain 1525 chr11 135006516 + 63939214 63939292 SVA_F 1814 - 624 702 119848 78 chain 6965 chr11 135006516 + 63939714 63939854 SVA_F 1814 - 674 813 99331 1 2 1 137 chain 1994 chr11 135006516 + 63939870 63939972 SVA_F 1814 - 702 804 119848 102 chain 11161 chr11 135006516 + 63943214 63944541 MLT1B 390 + 0 385 155581 15 12 13 81 1133 190 86 chain 25536 chr11 135006516 + 63998807 63999106 AluSp 311 - 6 306 102075 5 2 0 35 0 2 231 0 1 26 chain 21268 chr11 135006516 + 64041582 64041844 AluY 311 + 0 268 122960 89 0 4 33 0 1 32 0 1 108 chain 8794 chr11 135006516 + 64063508 64063608 HY3 101 + 0 100 166674 100 chain 25063 chr11 135006516 + 64076010 64076304 AluY 311 + 0 299 104492 19 0 4 109 0 1 166 chain 10868 chr11 135006516 + 64092513 64092687 LTR23 429 - 24 205 156705 108 28 35 38 chain 26550 chr11 135006516 + 64113907 64114211 AluYk4 311 - 10 311 97840 5 3 0 296 chain 24014 chr11 135006516 + 64134788 64135073 AluSp 311 - 18 302 110247 165 1 0 119 chain 2853 chr11 135006516 + 64155657 64155746 MLT1J 494 + 326 415 227811 28 36 37 15 1 0 9 chain 25543 chr11 135006516 + 64157729 64158101 THE1C 375 - 0 375 102033 19 7 6 62 5 6 84 15 18 180 chain 22043 chr11 135006516 + 64167080 64167385 AluSp 311 + 10 297 120054 119 12 7 151 13 0 10 chain 25397 chr11 135006516 + 64169563 64169873 AluSp 311 + 4 305 102697 294 9 0 7 chain 7545 chr11 135006516 + 64176011 64176102 MER31A 484 + 1 92 173903 91 chain 42544 chr11 135006516 + 64181094 64182382 MER41A 554 + 13 554 65969 109 0 1 307 753 0 39 0 5 80 chain 14861 chr11 135006516 + 64184474 64184689 L1MB3 1562 + 374 587 141748 52 1 0 33 7 8 111 2 0 9 chain 16190 chr11 135006516 + 64185752 64186058 THE1B 368 - 61 364 137784 77 1 0 4 54 49 56 4 2 5 0 3 17 15 14 13 0 3 60 chain 10539 chr11 135006516 + 64195890 64196058 MER30 238 - 0 183 158099 29 13 10 70 8 26 48 chain 23173 chr11 135006516 + 64221732 64222014 AluY 311 + 11 301 114795 52 12 20 218 chain 13338 chr11 135006516 + 64229610 64229820 MER66B 489 - 0 198 146943 92 5 0 38 26 19 49 chain 4318 chr11 135006516 + 64251224 64251273 MER41B 635 - 0 49 202996 49 chain 30733 chr11 135006516 + 64251322 64251773 LTR7B 505 - 10 505 82980 41 14 13 79 1 0 82 0 2 26 14 38 17 6 13 66 0 10 16 0 3 89 chain 5821 chr11 135006516 + 64253985 64254077 MLT2B2 565 - 17 111 186940 23 12 14 57 chain 16836 chr11 135006516 + 64262968 64263305 L1PB1 5432 - 12 316 136026 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 7 5 13 22 10 5 1 0 15 1 0 43 1 0 16 2 1 51 2 0 7 9 5 10 1 0 9 1 0 18 1 0 4 chain 7520 chr11 135006516 + 64274866 64274983 L1MB3 1562 - 198 321 174038 70 13 19 34 chain 23267 chr11 135006516 + 64275149 64275419 L1PA4 6152 - 11 280 114352 243 1 0 26 chain 4308 chr11 135006516 + 64320612 64320733 HAL1-2a_MD 234 - 78 216 203122 8 0 2 17 1 4 16 30 0 21 11 53 17 chain 87377 chr11 135006516 + 64469228 64470291 SVA_D 2077 + 884 2077 40623 24 2 0 10 2 0 21 5 0 6 24 0 3 11 0 38 1 0 50 0 2 55 1 0 104 0 177 174 0 1 522 4 0 6 chain 28506 chr11 135006516 + 64473657 64473980 L1PA5 6144 - 12 334 91166 86 2 1 235 chain 21604 chr11 135006516 + 64474574 64474877 AluY 311 + 8 303 121755 40 25 9 70 0 6 124 7 9 37 chain 4173 chr11 135006516 + 64548920 64548968 MSTD 398 + 6 54 204930 48 chain 17257 chr11 135006516 + 64696174 64696354 AluYb8 318 + 100 280 134903 180 chain 7366 chr11 135006516 + 64709821 64709979 L1PB1 5432 - 55 194 175003 7 1 0 22 29 24 27 13 1 16 1 0 42 chain 22782 chr11 135006516 + 64740145 64740447 AluY 311 + 1 290 116667 124 1 0 7 14 10 92 8 0 56 chain 27143 chr11 135006516 + 64745996 64746347 THE1A 353 - 1 353 95784 102 0 3 49 1 0 87 4 3 108 chain 27164 chr11 135006516 + 64746578 64746885 AluYf4 310 - 5 310 95708 179 2 0 126 chain 4881 chr11 135006516 + 64749881 64749934 L1MA2 4263 - 700 753 196462 53 chain 24989 chr11 135006516 + 64790130 64790421 AluY 311 + 0 293 104860 19 0 2 111 0 1 78 1 0 82 chain 84935 chr11 135006516 + 64790675 64792000 LTR5B 1012 - 0 1012 41539 78 0 6 178 0 2 551 0 2 12 313 0 33 14 0 138 0 4 8 chain 5085 chr11 135006516 + 64800662 64800729 MER33 330 + 157 229 194234 58 0 5 9 chain 23350 chr11 135006516 + 64817673 64817948 AluY 311 + 5 281 113916 127 0 1 148 chain 12910 chr11 135006516 + 64873728 64873942 THE1D 372 - 14 227 148593 73 4 2 59 1 0 24 32 34 21 chain 3189 chr11 135006516 + 64904112 64904148 L2a 937 - 175 211 221118 36 chain 10198 chr11 135006516 + 64915059 64915232 U2 167 + 1 164 159625 80 5 1 46 5 3 10 12 8 15 chain 8811 chr11 135006516 + 64921497 64921608 HSMAR2 1300 + 1 112 166598 111 chain 25274 chr11 135006516 + 64928885 64929197 AluSc5 308 + 1 308 103351 117 5 0 190 chain 21788 chr11 135006516 + 64967842 64968113 AluSg7 307 - 36 307 121069 60 0 1 5 2 1 204 chain 155707 chr11 135006516 + 65006117 65007793 SVA_F 1814 + 0 1814 23892 930 2 0 12 0 140 732 chain 6562 chr11 135006516 + 65027402 65027484 MER101 471 + 31 113 180771 82 chain 35103 chr11 135006516 + 65028034 65028492 LTR2 463 + 0 463 76047 65 0 1 54 8 12 230 12 13 51 1 0 37 chain 24644 chr11 135006516 + 65040208 65040499 AluSq 315 + 8 302 106759 199 1 4 91 chain 25132 chr11 135006516 + 65105261 65105571 AluSp 311 - 0 311 104112 16 2 0 201 0 3 91 chain 27792 chr11 135006516 + 65134473 65134833 LTR15 485 - 7 377 93724 21 0 1 14 2 0 5 1 0 153 0 8 103 0 2 20 0 2 41 chain 6386 chr11 135006516 + 65151310 65151384 LTR8 732 + 658 732 182130 74 chain 26675 chr11 135006516 + 65153271 65153566 AluYf5 307 - 13 307 97409 117 1 0 177 chain 21050 chr11 135006516 + 65155366 65155650 AluSp 311 + 14 297 123726 50 22 21 26 1 0 20 0 1 165 chain 24078 chr11 135006516 + 65175079 65175370 AluY 311 + 0 298 109880 97 0 1 33 7 0 49 0 13 105 chain 26272 chr11 135006516 + 65175537 65175844 AluSp 311 - 4 311 98928 307 chain 15076 chr11 135006516 + 65206198 65206816 L1MB7 1623 - 133 695 141093 11 1 0 29 3 0 9 8 0 7 22 14 45 1 0 11 3 1 17 10 9 14 1 0 18 267 238 10 1 0 7 7 8 5 1 0 42 3 2 65 chain 23352 chr11 135006516 + 65210081 65210357 AluSx4 309 + 10 287 113913 15 0 1 261 chain 148632 chr11 135006516 + 65217919 65219931 SVA_D 2077 + 88 2071 24799 770 289 240 151 49 0 103 0 49 520 0 20 130 chain 22347 chr11 135006516 + 65218712 65218965 SVA_F 1814 + 966 1219 118714 162 1 0 86 0 1 4 chain 3726 chr11 135006516 + 65219129 65219178 SVA_D 2077 + 1073 1122 107206 49 chain 24177 chr11 135006516 + 65225717 65226013 AluSc5 308 - 10 307 109336 24 0 2 243 1 0 28 chain 6550 chr11 135006516 + 65244292 65244370 AluJr4 308 + 205 283 180850 78 chain 19156 chr11 135006516 + 65245885 65246251 MER84 505 - 122 505 129660 32 10 24 111 7 4 14 3 0 27 4 3 15 0 67 9 57 0 77 chain 23017 chr11 135006516 + 65248293 65248575 AluSz6 309 + 9 288 115546 53 3 0 226 chain 4522 chr11 135006516 + 65252883 65252933 MER4A 717 - 44 94 200534 50 chain 23197 chr11 135006516 + 65276231 65276525 AluSc 308 - 13 308 114689 17 6 5 119 0 2 152 chain 85503 chr11 135006516 + 65289289 65290255 LTR13A 966 - 0 966 41343 966 chain 4563 chr11 135006516 + 65295271 65295324 Tigger4a 237 + 184 237 200080 53 chain 19620 chr11 135006516 + 65295953 65296252 AluSp 311 + 6 302 128334 126 13 11 42 26 0 7 0 25 85 chain 3259 chr11 135006516 + 65318330 65318367 U7 62 - 24 61 219785 37 chain 26020 chr11 135006516 + 65438074 65438380 AluY 311 + 0 304 99944 27 3 0 99 0 1 177 chain 24941 chr11 135006516 + 65445047 65445334 AluSp 311 - 24 311 105101 287 chain 4491 chr11 135006516 + 65451780 65451833 HERV35I-int 1679 - 143 196 200898 53 chain 26406 chr11 135006516 + 65465204 65465507 AluYk4 311 - 6 311 98390 180 0 2 123 chain 26491 chr11 135006516 + 65468777 65469066 AluYf4 310 - 12 301 98078 289 chain 19218 chr11 135006516 + 65472562 65472910 THE1D 372 + 2 371 129477 50 33 53 61 45 47 11 1 0 147 chain 85569 chr11 135006516 + 65473590 65474734 LTR13 1007 + 0 1007 41318 121 0 4 7 0 3 246 151 3 146 0 4 473 chain 10425 chr11 135006516 + 65473966 65474088 LTR13 1007 + 384 506 158581 122 chain 2106 chr11 135006516 + 65474090 65474113 LTR13 1007 + 358 381 237575 23 chain 35878 chr11 135006516 + 65477135 65477906 MER41A 554 + 0 554 75035 122 5 8 128 0 19 114 5 41 36 283 8 78 chain 6591 chr11 135006516 + 65501958 65502044 L1MA8 2339 + 1992 2077 180531 17 1 0 68 chain 38478 chr11 135006516 + 65502684 65503174 MLT2A2 560 + 42 547 71474 283 1 5 66 6 17 134 chain 28775 chr11 135006516 + 65520751 65521125 MLT2A1 477 + 0 392 90000 28 0 5 109 0 1 24 0 4 191 0 12 11 4 0 7 chain 6161 chr11 135006516 + 65522222 65522547 L1MA2 4263 - 1521 1862 183871 69 216 230 18 6 8 16 chain 29532 chr11 135006516 + 65523683 65523993 AluYa5 310 - 0 310 86522 310 chain 131628 chr11 135006516 + 65529665 65531199 SVA_D 2077 - 1 2076 27710 50 0 1 540 0 1 30 0 538 13 1 0 235 29 0 22 0 40 570 3 1 16 9 2 16 chain 28949 chr11 135006516 + 65540187 65540992 MER49 923 - 16 568 89221 17 7 8 25 277 27 12 10 11 21 3 0 8 34 36 232 16 15 69 6 0 19 16 19 33 chain 36615 chr11 135006516 + 65604031 65604536 L1PA8 5853 + 5350 5853 74076 46 0 2 127 1 4 35 1 0 46 3 1 67 8 14 9 8 0 39 2 1 19 1 0 93 chain 27122 chr11 135006516 + 65606696 65606981 AluYa5 310 - 7 292 95864 285 chain 17418 chr11 135006516 + 65656902 65657105 AluSg7 307 - 17 220 134462 10 1 0 153 0 1 39 chain 7026 chr11 135006516 + 65717631 65717836 L1MA8 2339 - 71 239 177284 11 1 0 25 53 45 24 3 0 42 29 4 17 chain 27174 chr11 135006516 + 65723604 65723907 AluSp 311 - 8 311 95681 303 chain 27362 chr11 135006516 + 65760774 65761076 AluYf4 310 + 0 302 95070 302 chain 45115 chr11 135006516 + 65768119 65768619 LTR2C 499 + 0 499 62918 441 1 0 58 chain 25844 chr11 135006516 + 65777524 65777952 LTR3A 482 + 26 434 100675 81 0 1 7 0 1 28 23 24 60 54 32 146 2 1 27 chain 6071 chr11 135006516 + 65820613 65820679 U13 108 + 0 66 184642 66 chain 28435 chr11 135006516 + 65853601 65853908 AluYf4 310 - 5 310 91447 41 2 0 264 chain 158170 chr11 135006516 + 65858994 65860728 L1PA3long 6157 - 0 1741 23550 1368 1 8 365 chain 204725 chr11 135006516 + 65860728 65862934 L1PA3long 6157 + 2204 4411 18873 984 0 1 1222 chain 6794 chr11 135006516 + 65892605 65892753 L1PB1 5432 + 5243 5373 178995 38 1 0 15 24 12 11 10 8 5 1 0 14 2 0 27 chain 3089 chr11 135006516 + 65905502 65905536 MER5A1 166 - 49 83 223120 34 chain 4244 chr11 135006516 + 65915324 65915382 L1MA3 4352 + 4226 4282 203951 32 2 0 24 chain 24154 chr11 135006516 + 65940181 65940463 AluSc 308 + 8 297 109457 12 0 7 270 chain 143537 chr11 135006516 + 65967879 65971546 L1MA3 4352 + 352 3254 25554 66 9 1 57 18 22 192 4 10 21 0 1 51 2 0 14 20 18 63 331 23 36 0 2 32 0 1 55 1 0 6 1 2 55 2 1 29 1 0 147 1 0 4 1157 742 45 5 6 207 0 1 51 11 10 12 7 10 5 1 0 19 1 5 34 1 0 87 1 6 11 5 0 59 10 8 146 1 0 410 48 0 54 2 6 59 chain 12610 chr11 135006516 + 65997207 65997365 AluSp 311 + 77 230 149807 45 5 0 108 chain 46955 chr11 135006516 + 66087104 66087618 MER9a2 513 + 0 513 61253 153 1 0 360 chain 101657 chr11 135006516 + 66087650 66088804 L1PA4 6152 + 5000 6152 36353 299 1 2 71 2 0 526 2 0 98 0 1 155 chain 7763 chr11 135006516 + 66115590 66115672 tRNA-Ser-AGY 82 + 0 82 172524 82 chain 37859 chr11 135006516 + 66145816 66146589 L1PA6 6164 + 5702 6162 72330 112 0 1 17 314 0 330 chain 7488 chr11 135006516 + 66154408 66154517 MLT1A0 366 + 257 366 174221 84 0 3 5 6 3 14 chain 2868 chr11 135006516 + 66156290 66156328 LTR41 747 - 177 214 227550 4 1 0 33 chain 3931 chr11 135006516 + 66160357 66160405 L1ME1 1623 + 884 931 208391 9 1 0 38 chain 3071 chr11 135006516 + 66164089 66164123 MLT1D 503 + 449 483 223542 34 chain 4059 chr11 135006516 + 66170555 66170602 L1MD1 2063 - 1784 1831 206494 47 chain 21627 chr11 135006516 + 66172069 66172417 THE1D 372 + 0 372 121667 56 9 19 55 4 8 24 21 25 5 0 1 45 2 8 70 1 0 56 chain 20105 chr11 135006516 + 66198577 66198848 AluSc8 310 + 2 269 126808 40 16 9 74 1 4 140 chain 118288 chr11 135006516 + 66207294 66208768 LTR12C 1709 - 0 1708 31695 84 5 4 63 1 0 86 0 4 219 3 1 20 11 4 106 4 2 4 1 0 38 0 2 108 0 1 64 0 200 12 8 4 209 2 4 89 0 43 337 chain 40636 chr11 135006516 + 66209464 66209974 MER9a3 513 - 0 513 68390 79 0 1 141 18 0 17 0 17 147 0 1 90 0 2 18 chain 37476 chr11 135006516 + 66212957 66213882 MER4B 649 + 0 576 72847 29 5 0 170 0 23 94 5 2 46 5 0 77 43 0 6 21 9 9 308 0 31 8 12 68 chain 13315 chr11 135006516 + 66217069 66217379 MER4D1 891 + 590 882 147033 8 0 7 57 1 0 4 60 33 20 2 6 66 37 36 55 chain 18885 chr11 135006516 + 66224611 66224920 LTR43B 570 + 157 467 130410 136 66 67 107 chain 49919 chr11 135006516 + 66231586 66232146 L1PA4 6152 + 5592 6151 59077 251 1 0 308 chain 2755 chr11 135006516 + 66271932 66271980 MLT1A1 405 - 354 405 229435 12 4 3 18 0 4 14 chain 24764 chr11 135006516 + 66284940 66285232 AluSc 308 - 12 304 106086 292 chain 8399 chr11 135006516 + 66339860 66340000 MER4D1 891 + 299 440 168862 61 0 1 21 6 14 9 6 0 5 1 0 20 1 0 10 chain 39040 chr11 135006516 + 66341067 66341517 LTR7 482 + 0 482 70677 230 0 31 28 0 1 192 chain 209788 chr11 135006516 + 66341519 66344198 HERVH-int 3825 + 0 2685 18505 21 0 1 34 0 3 122 1 5 26 0 11 311 5 0 36 1 0 9 2 1 12 11 80 25 45 0 20 19 0 6 0 1 5 1 0 50 0 1 4 2 0 328 6 20 97 22 0 202 9 0 14 14 11 19 1 0 209 1 6 402 0 5 204 12 13 371 chain 17062 chr11 135006516 + 66344236 66344427 LTR7 482 + 290 482 135424 17 0 1 174 chain 46105 chr11 135006516 + 66350136 66350695 LTR10C 591 - 29 591 61940 52 0 2 197 0 3 273 3 1 34 chain 23624 chr11 135006516 + 66351742 66352029 AluSp 311 + 2 287 112442 118 2 0 167 chain 161959 chr11 135006516 + 66354486 66356581 SVA_F 1814 + 0 1810 23070 38 0 1 847 0 2 60 352 14 165 0 50 633 chain 12067 chr11 135006516 + 66355431 66355698 SVA_F 1814 + 1012 1151 125265 34 128 0 105 chain 6486 chr11 135006516 + 66355465 66355535 SVA_F 1814 + 1222 1291 140789 52 1 0 17 chain 3537 chr11 135006516 + 66355698 66355735 SVA_F 1814 + 911 948 181987 37 chain 3206 chr11 135006516 + 66355735 66355771 SVA_F 1814 + 899 935 186411 36 chain 3289 chr11 135006516 + 66364450 66364486 MIR 256 + 105 141 219183 36 chain 25042 chr11 135006516 + 66421680 66421976 AluYk4 311 + 0 291 104588 126 5 0 165 chain 28107 chr11 135006516 + 66450534 66450836 AluYa5 310 - 7 310 92624 176 0 1 126 chain 3580 chr11 135006516 + 66470440 66470479 MER58A 224 - 159 198 213990 39 chain 20984 chr11 135006516 + 66501253 66501478 AluYb8 318 + 86 311 123977 225 chain 24333 chr11 135006516 + 66513911 66514197 AluSp 311 + 8 294 108463 286 chain 5067 chr11 135006516 + 66526675 66526749 MER53 195 + 24 101 194455 46 2 5 26 chain 18017 chr11 135006516 + 66539364 66539605 Tigger1 2417 + 1417 1676 132812 89 8 26 144 chain 139979 chr11 135006516 + 66546055 66547620 L1PA4 6152 + 4561 6131 26147 743 0 4 74 2 0 407 0 2 217 0 1 122 chain 50618 chr11 135006516 + 66591934 66592500 L1PA4 6152 - 16 582 58564 566 chain 17165 chr11 135006516 + 66594624 66594820 AluSp 311 - 115 311 135123 196 chain 6270 chr11 135006516 + 66600295 66600493 MLT1C 463 - 62 265 183001 59 41 36 10 0 1 10 53 62 25 chain 9174 chr11 135006516 + 66603570 66603687 L1MB7 1623 - 453 569 164687 50 1 0 66 chain 4769 chr11 135006516 + 66687233 66687293 U7 62 + 1 61 197701 60 chain 83591 chr11 135006516 + 66692333 66693382 MER11B 1079 - 30 1079 42076 131 7 8 144 6 0 171 13 12 49 6 7 268 3 0 29 0 5 108 0 3 114 chain 4381 chr11 135006516 + 66708211 66708276 L1MB3 1562 + 782 840 202179 19 7 0 39 chain 29596 chr11 135006516 + 66713275 66713589 AluYb8 318 + 0 314 86218 314 chain 29204 chr11 135006516 + 66727407 66727713 AluYb8 318 - 12 318 88033 306 chain 17449 chr11 135006516 + 66729183 66729424 LOR1b 457 + 0 248 134377 27 0 2 10 1 9 100 3 0 100 chain 6986 chr11 135006516 + 66740701 66740807 MSTA 426 + 278 392 177566 18 14 22 74 chain 128221 chr11 135006516 + 66756093 66757614 LTR12C 1709 + 0 1705 28515 202 0 1 6 0 10 177 4 5 91 0 1 206 0 159 217 0 2 34 1 0 113 0 4 256 6 5 12 0 8 196 chain 30017 chr11 135006516 + 66758545 66758863 AluYb8 318 - 0 318 84749 318 chain 4452 chr11 135006516 + 66768963 66769025 MIR 256 - 105 166 201316 30 2 1 30 chain 29803 chr11 135006516 + 66772855 66773214 MER41A 554 + 0 359 85426 359 chain 3986 chr11 135006516 + 66801098 66801146 MIR 256 + 77 125 207590 48 chain 10759 chr11 135006516 + 66829468 66829604 THE1D 372 - 234 372 157162 123 0 2 13 chain 2988 chr11 135006516 + 66846679 66846716 MIR 256 + 50 87 225271 37 chain 24421 chr11 135006516 + 66857368 66857655 AluY 311 + 5 292 107963 287 chain 12325 chr11 135006516 + 66859643 66859799 L1PA8 5853 - 124 276 150908 37 1 0 11 1 0 73 3 1 30 chain 24316 chr11 135006516 + 66871712 66872001 AluY 311 + 8 297 108566 110 1 0 8 0 1 170 chain 3207 chr11 135006516 + 66919467 66919504 MER33 330 + 198 235 220771 37 chain 5878 chr11 135006516 + 66921807 66921891 L1MB5 1630 - 30 214 186391 51 1 101 32 chain 24062 chr11 135006516 + 66923098 66923386 AluSp 311 - 23 311 109969 288 chain 23826 chr11 135006516 + 66955682 66955978 AluY 311 + 15 303 111327 23 4 0 92 1 2 165 5 0 6 chain 24042 chr11 135006516 + 66965912 66966195 AluYc 301 + 1 286 110107 113 0 2 170 chain 6714 chr11 135006516 + 66986380 66986459 MER30 238 + 158 238 179577 28 0 1 51 chain 57011 chr11 135006516 + 66989540 66990140 SVA_F 1814 - 0 600 54522 600 chain 17547 chr11 135006516 + 66992597 66992823 MER75 514 + 44 273 134133 56 4 7 166 chain 9866 chr11 135006516 + 67060839 67060963 L1MB7 1623 - 447 571 161251 124 chain 3116 chr11 135006516 + 67097145 67097179 Tigger2a 444 + 0 34 222638 34 chain 17218 chr11 135006516 + 67101394 67101637 Tigger2 2703 + 2203 2467 134999 81 1 0 33 5 14 34 2 11 73 0 4 14 chain 24212 chr11 135006516 + 67128516 67128804 AluSp 311 - 21 311 109141 26 0 1 153 1 2 108 chain 18760 chr11 135006516 + 67129884 67130126 7SK 245 + 0 245 130801 137 4 7 101 chain 22586 chr11 135006516 + 67162093 67162376 AluSp 311 - 11 301 117652 48 0 8 39 8 9 64 2 0 122 chain 100292 chr11 135006516 + 67243380 67244705 LTR12C 1709 + 0 1709 36693 291 0 1 46 0 43 51 1 0 32 3 0 186 0 278 184 1 0 4 4 2 97 45 14 211 0 101 86 1 0 82 chain 57039 chr11 135006516 + 67244903 67245525 SVA_D 2077 - 0 623 54509 33 0 1 589 chain 10928 chr11 135006516 + 67253683 67253832 LTR1 825 - 640 808 156490 69 5 12 26 0 12 49 chain 43327 chr11 135006516 + 67277999 67278537 MER41A 554 - 0 554 65003 137 1 6 135 11 22 254 chain 23081 chr11 135006516 + 67280068 67280358 AluSc8 310 + 6 298 115237 125 2 4 163 chain 9827 chr11 135006516 + 67283004 67283127 L1MC3 1789 + 1091 1214 161465 123 chain 22484 chr11 135006516 + 67299471 67299803 MER41D 557 + 249 557 118092 110 37 13 185 chain 28140 chr11 135006516 + 67299829 67300197 THE1C 375 + 0 368 92504 151 4 5 194 1 0 18 chain 3800 chr11 135006516 + 67307270 67307314 MER51A 677 + 301 345 210393 44 chain 8501 chr11 135006516 + 67318366 67318467 THE1C 375 + 235 336 168289 101 chain 24252 chr11 135006516 + 67320956 67321246 AluY 311 + 8 298 108929 290 chain 10589 chr11 135006516 + 67328196 67328411 LTR23 429 + 0 226 157878 44 10 11 20 5 6 10 29 36 13 1 3 83 chain 44756 chr11 135006516 + 67331261 67331790 MER41A 554 + 0 554 63325 39 0 24 462 0 1 28 chain 73274 chr11 135006516 + 67340005 67340977 LTR13_ 950 + 0 950 46896 167 0 3 6 0 5 24 22 4 89 1 0 308 11 0 76 0 2 33 16 3 74 1 2 5 0 10 139 chain 12257 chr11 135006516 + 67342611 67342783 LTR23 429 + 118 290 151171 28 4 5 120 1 0 19 chain 7475 chr11 135006516 + 67361759 67361863 LTR49-int 1717 - 1448 1552 174311 77 1 2 11 1 0 14 chain 104377 chr11 135006516 + 67364957 67366166 SVA_C 1631 - 8 1423 35645 539 0 167 38 0 1 5 25 26 163 0 37 439 chain 74717 chr11 135006516 + 67370824 67371784 LTR5_Hs 974 - 0 974 46152 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 131143 chr11 135006516 + 67386323 67387896 LTR12C 1709 + 0 1709 27825 41 5 1 150 0 3 504 0 159 252 1 0 7 3 1 99 7 11 262 22 1 192 2 0 26 chain 413702 chr11 135006516 + 67387995 67392858 HERV9-int 5642 + 0 4809 9707 795 1 0 118 4 0 194 84 0 2103 0 12 627 1 8 641 0 16 295 chain 5440 chr11 135006516 + 67389127 67389187 HERV9-int 5642 + 1047 1107 190611 60 chain 7294 chr11 135006516 + 67393764 67393868 LTR12C 1709 + 8 104 175482 30 13 5 61 chain 17670 chr11 135006516 + 67393892 67394108 LTR12C 1709 + 661 986 133775 136 0 109 80 chain 12517 chr11 135006516 + 67394121 67394302 LTR12C 1709 + 1211 1396 135377 13 0 4 168 chain 18533 chr11 135006516 + 67394302 67394513 LTR12C 1709 + 1498 1709 131421 211 chain 4714 chr11 135006516 + 67403856 67403960 L1MB3 1562 + 960 1065 198342 12 1 0 28 31 33 32 chain 48128 chr11 135006516 + 67404752 67405344 LTR10C 591 - 0 591 60382 80 3 1 179 0 1 191 3 1 82 0 1 12 1 2 41 chain 26523 chr11 135006516 + 67428499 67428871 MER4E 760 + 379 752 97959 67 1 0 51 1 0 5 0 1 65 17 18 138 0 1 27 chain 6108 chr11 135006516 + 67439367 67439443 MER4A1 472 + 134 217 184361 48 0 7 28 chain 194437 chr11 135006516 + 67443702 67446631 L1PB1 5432 + 2089 5417 19634 286 0 4 28 0 1 94 2 0 22 0 1 317 2 0 631 1 3 6 2 0 6 1 2 219 7 10 9 5 0 7 18 8 34 0 1 268 7 3 143 1 2 231 234 678 14 3 0 21 1 0 9 19 14 6 2 0 53 2 1 16 1 0 27 0 1 16 1 0 15 24 12 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 1 0 4 chain 26758 chr11 135006516 + 67448527 67448901 THE1C 375 - 0 372 97137 25 1 0 147 25 24 176 chain 76360 chr11 135006516 + 67449257 67450131 MER11D 897 - 0 897 45285 281 0 23 593 chain 39214 chr11 135006516 + 67452984 67453450 LTR15 485 - 0 485 70438 127 0 17 164 0 2 175 chain 73314 chr11 135006516 + 67466020 67467044 MER11A 1151 + 0 1151 46877 47 8 107 22 8 0 54 1 0 35 0 1 28 4 0 146 0 1 12 0 1 82 1 2 46 3 4 96 5 6 145 17 48 37 0 1 110 8 9 26 1 3 82 chain 91762 chr11 135006516 + 67470180 67471689 HERVK11-int 2540 + 911 2303 39045 90 59 43 21 2 0 56 19 18 35 17 13 22 19 9 10 1 0 25 16 5 32 21 1 437 6 1 106 1 0 188 1 0 77 1 0 4 7 5 129 30 0 9 47 35 21 chain 9501 chr11 135006516 + 67472760 67472882 MER11A 1151 + 0 124 163073 108 0 2 14 chain 81333 chr11 135006516 + 67483960 67484973 LTR5A 1029 - 0 1029 43029 52 0 2 131 9 0 9 0 9 439 3 4 224 1 14 145 chain 350678 chr11 135006516 + 67494280 67498335 HERVE-int 4064 - 0 4064 11579 657 1 11 239 0 2 873 0 2 70 3 0 675 1 2 722 4 1 810 chain 81648 chr11 135006516 + 67506807 67507820 LTR5A 1029 - 0 1029 42910 185 9 0 9 0 9 578 1 4 97 0 13 134 chain 79982 chr11 135006516 + 67525359 67526320 LTR5_Hs 974 + 0 974 43605 50 0 3 182 0 1 54 0 2 147 0 3 10 0 4 518 chain 29380 chr11 135006516 + 67527155 67527566 LTR7 482 + 0 482 87167 68 9 47 109 3 4 30 0 1 6 0 31 11 2 1 57 1 2 115 chain 284211 chr11 135006516 + 67527568 67531172 HERVH-int 3825 + 0 3825 14404 212 0 11 312 1 0 4 1 0 6 0 1 24 1 0 10 1 0 10 4 0 7 25 59 42 46 1 15 21 0 9 0 1 5 2 1 49 1 0 447 15 0 417 5 6 36 4 31 302 0 10 273 0 1 335 0 10 423 9 11 14 0 1 24 8 218 260 0 2 149 0 1 75 chain 29282 chr11 135006516 + 67532426 67532823 LTR7 482 + 1 468 87646 68 8 46 68 1 0 41 3 4 30 0 32 178 chain 17124 chr11 135006516 + 67538499 67539240 MSTA 426 + 37 426 135247 63 51 50 46 373 62 42 10 18 51 48 0 57 chain 4347 chr11 135006516 + 67557834 67557902 MADE1 96 - 0 96 202627 40 4 32 24 chain 83759 chr11 135006516 + 67584421 67585645 LTR12C 1709 - 12 1709 42005 61 0 131 277 20 13 6 24 0 25 0 207 129 0 118 243 25 23 76 7 50 37 0 9 9 14 5 227 20 27 24 chain 88924 chr11 135006516 + 67597455 67598481 LTR5A 1029 - 0 1029 40037 137 0 1 262 0 1 70 0 1 407 1 0 57 0 1 92 chain 27920 chr11 135006516 + 67609376 67609772 LTR7 482 - 0 481 93277 94 0 2 62 17 61 38 0 1 109 8 46 68 chain 12976 chr11 135006516 + 67612079 67612624 HERVH-int 3825 - 0 550 14301 240 0 4 125 0 1 8 3 0 8 1 4 160 chain 41516 chr11 135006516 + 67612628 67613125 LTR2C 499 - 0 499 67260 64 1 0 182 1 0 72 4 7 63 0 1 110 chain 340591 chr11 135006516 + 67615777 67619868 HERVE-int 4064 - 12 4064 11885 646 2 0 1025 5 8 477 19 2 360 26 1 719 1 2 698 0 1 113 chain 74382 chr11 135006516 + 67620956 67624080 HERVH-int 3825 - 550 3825 14301 824 1 49 305 0 5 37 14 10 1015 0 1 250 1 0 23 0 1 26 1 0 5 54 13 14 2 1 40 1 0 4 29 175 144 1 0 333 chain 23482 chr11 135006516 + 67624095 67624432 LTR7 482 - 13 482 113207 102 1 2 41 0 10 20 0 31 38 0 1 72 16 105 47 chain 3086 chr11 135006516 + 67625297 67625332 MER5A1 166 + 101 136 223172 35 chain 2764 chr11 135006516 + 67629179 67629264 MLT1C 463 + 0 87 229258 17 40 42 28 chain 523658 chr11 135006516 + 67632189 67639258 L1PA4 6152 - 9 6152 4796 733 0 3 23 11 10 1025 0 5 403 0 1 161 0 1 691 1 0 191 966 0 51 4 2 523 2 0 139 0 2 75 0 3 870 0 1 140 0 3 53 1 0 140 0 27 142 0 1 724 chain 74774 chr11 135006516 + 67635434 67636394 LTR5_Hs 974 - 0 974 46122 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 31191 chr11 135006516 + 67647585 67648003 MER4A1 472 + 35 470 82177 65 0 2 94 0 3 27 18 26 197 0 4 17 chain 47012 chr11 135006516 + 67649536 67650086 LTR6B 557 - 0 557 61195 161 0 1 27 0 5 29 0 1 333 chain 174854 chr11 135006516 + 67650978 67655003 HERVS71-int 4705 - 429 4058 21486 8 1 0 17 124 87 15 2 0 7 2 0 18 29 25 6 1 0 46 23 18 14 3 1 11 2 1 39 1 0 21 1 0 10 6 4 26 1 0 4 4 2 17 1 0 23 3 0 33 12 9 21 12 8 25 8 5 4 1 0 7 1 0 29 1 0 5 2 0 5 11 8 12 79 57 13 19 17 38 6 3 32 1 0 29 1 0 6 25 20 57 2 0 17 1 0 16 35 29 29 64 50 12 1 0 11 28 23 11 8 5 17 14 11 12 1 0 41 0 3 5 143 101 26 1 0 4 1 0 20 12 11 11 14 5 13 2 1 9 1 0 10 9 7 28 10 8 22 3 1 9 2 0 7 1 0 6 76 61 15 1 0 11 20 14 24 1 0 10 2 0 17 47 44 16 1 0 53 1 0 42 14 10 11 1 0 6 1 0 8 33 21 11 10 6 4 1 0 7 1 0 7 4 1 11 7 4 8 1 0 16 35 23 19 2 1 10 1 0 10 2 0 9 1 0 7 26 0 82 24 28 209 11 10 374 1 0 563 3 6 36 2 3 29 15 9 120 7 6 22 4 0 21 75 27 6 2 0 10 8 4 10 16 10 18 1 0 4 1 0 17 1 0 5 7 4 12 4 0 5 1 0 8 chain 4255 chr11 135006516 + 67657686 67657749 MER58A 224 - 109 173 203826 20 2 3 41 chain 72915 chr11 135006516 + 67660223 67661296 MER11A 1151 + 0 1144 47059 55 0 99 76 1 0 64 4 0 129 21 22 11 0 3 79 0 1 136 1 5 157 24 0 10 8 15 21 18 0 37 0 1 60 30 32 131 chain 9440 chr11 135006516 + 67663101 67663208 U6 107 + 0 107 163355 107 chain 50144 chr11 135006516 + 67663208 67663791 L1PA2 6032 + 5449 6032 58909 417 5 0 7 21 26 133 chain 9843 chr11 135006516 + 67665744 67665867 LTR2 463 - 99 222 161376 123 chain 4659 chr11 135006516 + 67665895 67665968 L1P1 4361 + 4270 4341 198960 35 1 0 23 2 1 12 chain 30798 chr11 135006516 + 67685085 67685783 L1PB1 5432 - 2 615 82868 4 1 0 4 1 0 18 1 0 12 1 0 20 7 6 21 2 0 9 8 12 11 8 0 7 1 2 8 3 0 15 1 0 45 1 0 14 3 2 51 3 1 9 5 1 14 1 0 9 1 0 18 13 0 18 55 1 14 5 6 36 24 28 5 2 0 156 9 12 24 chain 33657 chr11 135006516 + 67687836 67688291 HERVK-int 6823 + 5125 5581 78158 34 0 1 4 4 3 105 0 3 198 1 0 4 0 1 36 1 0 7 7 6 54 chain 85569 chr11 135006516 + 67688730 67689751 LTR5A 1029 + 0 1029 41319 150 1 0 27 0 1 767 0 6 14 2 4 60 chain 19330 chr11 135006516 + 67712774 67713035 L1PA8 5853 + 5586 5842 129144 20 9 7 66 1 0 61 2 1 19 1 0 82 chain 11099 chr11 135006516 + 67715957 67716108 L1MA8 2339 + 1934 2082 155810 20 2 0 55 1 0 73 chain 106539 chr11 135006516 + 67730557 67731955 LTR12C 1709 + 0 1708 35112 259 1 2 77 10 53 73 0 3 183 0 278 184 1 0 4 4 2 46 4 2 52 1 0 6 11 4 333 1 0 66 1 0 81 chain 83912 chr11 135006516 + 67735718 67736748 LTR5A 1029 - 0 1029 41948 873 10 9 147 chain 341733 chr11 135006516 + 67745973 67750023 HERVE-int 4064 - 0 4064 11845 207 0 1 336 0 18 26 1 0 73 2 0 572 0 7 321 2 0 121 1 2 274 1 0 570 0 1 125 0 1 238 1 2 358 4 1 42 11 11 470 7 0 287 chain 3390 chr11 135006516 + 67796722 67796774 LOR1a 498 + 400 453 217280 25 4 5 23 chain 24494 chr11 135006516 + 67826368 67826660 AluSp 311 - 17 310 107573 169 0 1 123 chain 9406 chr11 135006516 + 67866467 67866704 L1MB8 1703 + 1430 1623 163525 6 2 0 27 8 12 96 80 34 18 chain 23491 chr11 135006516 + 67868777 67869285 L1MA6 2487 + 686 1114 113170 52 16 19 68 0 4 54 6 0 8 103 25 34 1 0 12 16 11 54 10 13 74 chain 22845 chr11 135006516 + 67904698 67904979 AluSc8 310 + 16 305 116370 31 0 6 73 0 4 157 2 0 18 chain 26901 chr11 135006516 + 67997115 67997495 THE1C 375 - 0 375 96628 26 2 1 99 3 2 57 1 0 8 0 2 4 1 0 56 15 12 108 chain 23323 chr11 135006516 + 68012420 68012796 THE1D 372 + 0 372 114077 57 13 6 97 31 34 14 15 16 116 1 0 32 chain 6932 chr11 135006516 + 68012927 68013033 Tigger3b 1229 - 920 1028 177952 14 6 5 50 0 3 36 chain 23758 chr11 135006516 + 68013908 68014196 AluY 311 + 7 296 111717 125 0 1 163 chain 25312 chr11 135006516 + 68017538 68017828 AluSp 311 - 11 301 103163 290 chain 3199 chr11 135006516 + 68017838 68017879 HY3 101 + 56 96 220940 35 1 0 5 chain 22831 chr11 135006516 + 68018410 68018785 THE1C 375 + 0 375 116440 81 4 5 25 0 1 18 5 9 6 4 0 39 26 24 37 11 12 93 1 0 25 chain 25575 chr11 135006516 + 68052039 68052375 THE1B 368 + 2 342 101846 167 5 4 25 0 3 9 0 4 16 1 0 11 1 0 101 chain 3490 chr11 135006516 + 68166176 68166215 MER58B 340 + 139 178 215516 39 chain 27936 chr11 135006516 + 68172167 68172477 AluYb8 318 + 11 317 93218 293 4 0 13 chain 12221 chr11 135006516 + 68220374 68221442 L1MA3 4352 + 3910 4303 151339 14 8 0 100 841 181 14 4 1 39 2 0 23 8 6 15 chain 22203 chr11 135006516 + 68231611 68231896 AluSg7 307 - 19 307 119338 12 1 2 140 1 2 32 0 1 99 chain 13122 chr11 135006516 + 68240270 68240475 L1MB8 1703 - 146 345 147756 66 1 0 6 0 3 40 6 0 14 1 0 4 2 1 65 chain 138631 chr11 135006516 + 68242382 68243921 SVA_C 1631 - 0 1571 26375 628 1 0 147 4 0 178 0 37 581 chain 6655 chr11 135006516 + 68273554 68273634 MADE1 96 + 0 96 180044 49 0 16 31 chain 6273 chr11 135006516 + 68279626 68279710 MLT1B 390 - 0 84 182982 14 1 0 64 0 1 5 chain 6508 chr11 135006516 + 68284918 68285116 L1MC4 1079 + 55 265 181173 14 1 0 26 100 113 57 chain 9622 chr11 135006516 + 68300264 68300390 Tigger3c 601 + 412 537 162483 9 2 0 94 0 1 21 chain 72825 chr11 135006516 + 68307669 68308712 MER11C 1089 - 16 1088 47117 8 0 1 31 12 12 21 5 7 11 1 0 62 1 0 54 0 1 73 0 8 46 0 1 38 1 0 4 1 5 75 58 61 233 0 4 61 0 9 58 1 0 188 chain 23542 chr11 135006516 + 68318952 68319254 AluSg7 307 - 10 307 112896 5 2 0 9 4 0 141 0 1 9 0 1 21 1 0 110 chain 34995 chr11 135006516 + 68390172 68390666 LTR7 482 + 0 481 76194 121 51 0 109 0 31 56 0 4 44 1 2 15 0 2 97 chain 278881 chr11 135006516 + 68390669 68396023 HERVH-int 3825 + 0 3825 14700 499 0 4 28 0 57 11 1 0 5 28 0 15 5 22 14 107 1 23 42 0 18 1 0 82 0 1 4 2 0 286 13 14 152 18 8 187 9 5 6 5 0 23 1243 7 32 1 0 96 4 3 95 152 138 300 0 2 272 0 4 560 166 1 41 1 0 582 0 2 225 chain 3338 chr11 135006516 + 68391340 68391375 HERVH-int 3825 + 656 691 218281 35 chain 73877 chr11 135006516 + 68392591 68393422 L1PA4 6152 + 5318 6149 46574 831 chain 34387 chr11 135006516 + 68399817 68400255 LTR7 482 + 0 473 77082 138 0 1 85 3 4 35 1 32 124 13 15 39 chain 7774 chr11 135006516 + 68401245 68401331 LTR7 482 + 0 86 172453 86 chain 7211 chr11 135006516 + 68401331 68401419 LTR7 482 + 136 224 175991 88 chain 2698 chr11 135006516 + 68401422 68401456 LTR7 482 + 228 263 230241 30 0 1 4 chain 9843 chr11 135006516 + 68401457 68401577 LTR7 482 + 295 419 161377 10 0 3 57 1 2 52 chain 3989 chr11 135006516 + 68401589 68401632 LTR7 482 + 433 476 207542 43 chain 288823 chr11 135006516 + 68401640 68405207 HERVH-int 3825 + 0 3825 14098 212 0 11 110 1 0 117 1 27 54 1 0 14 0 1 24 1 0 10 1 0 9 4 0 14 17 49 4 1 0 17 41 0 24 1 0 43 18 18 20 0 1 447 16 0 459 5 32 281 0 8 295 0 1 334 0 1 433 9 11 5 0 3 31 8 218 260 0 2 225 chain 34003 chr11 135006516 + 68406462 68406907 LTR7 482 + 0 482 77610 224 5 37 104 1 2 15 0 2 35 12 14 49 chain 15240 chr11 135006516 + 68407394 68407598 LTR43 600 - 8 214 140664 72 6 8 126 chain 42730 chr11 135006516 + 68439219 68439751 L1P3 4156 - 20 569 65742 20 1 0 9 2 0 144 5 24 112 2 3 237 chain 19038 chr11 135006516 + 68459224 68459519 AluSz 310 + 7 310 130005 190 56 64 49 chain 53340 chr11 135006516 + 68461944 68462819 MER4D0 881 + 11 881 56809 66 16 21 14 1 0 14 0 1 7 12 13 21 7 0 137 1 0 5 1 2 85 1 21 14 1 0 25 6 1 68 1 0 4 36 28 15 4 5 56 27 15 172 0 1 39 1 2 18 chain 7297 chr11 135006516 + 68465488 68465611 L1MD1 2063 + 1326 1465 175464 50 0 1 14 21 36 38 chain 4871 chr11 135006516 + 68571626 68571685 5S 121 + 32 90 196574 15 1 0 43 chain 7051 chr11 135006516 + 68618188 68618461 LTR64 526 + 234 526 177095 33 21 23 55 132 152 9 3 0 20 chain 136623 chr11 135006516 + 68628279 68629804 SVA_D 2077 + 1 2056 26711 6 1 0 6 1 0 6 1 0 6 1 0 162 0 1 28 1 0 102 1 0 555 0 535 648 chain 35728 chr11 135006516 + 68634930 68635500 LTR61 567 + 21 567 75227 34 17 11 41 1 0 8 0 1 76 2 0 30 1 2 45 9 0 71 9 14 66 18 1 22 5 9 19 0 1 46 1 0 49 chain 14301 chr11 135006516 + 68637764 68637928 AluYc 301 + 137 301 143558 164 chain 36263 chr11 135006516 + 68641449 68642050 LTR61 567 + 0 567 74546 17 1 0 5 10 1 32 17 11 41 1 0 8 0 1 76 2 0 30 1 2 45 9 0 71 9 14 58 18 1 35 0 4 22 1 2 42 1 0 49 chain 23388 chr11 135006516 + 68643189 68643500 THE1C 375 + 6 314 113714 119 3 0 57 1 2 6 1 0 124 chain 5500 chr11 135006516 + 68646889 68646952 MER4C 627 - 408 471 190040 63 chain 10894 chr11 135006516 + 68692365 68692535 MER30 238 + 48 228 156610 57 9 22 72 8 5 24 chain 3695 chr11 135006516 + 68720018 68720062 L1MB7 1623 - 200 244 212004 44 chain 5165 chr11 135006516 + 68732080 68732221 MLT1B 390 - 99 241 193397 51 53 20 11 6 40 20 chain 2791 chr11 135006516 + 68741603 68741868 LTR12D 1347 - 266 681 228877 30 216 366 19 chain 25454 chr11 135006516 + 68743167 68743468 AluSp 311 - 14 310 102437 49 5 0 247 chain 16873 chr11 135006516 + 68760526 68760829 LTR46 455 + 43 433 135908 61 44 132 130 19 25 13 1 0 8 6 0 21 chain 26181 chr11 135006516 + 68807280 68807648 THE1C 375 - 0 368 99277 25 1 0 177 2 0 34 13 14 55 7 9 54 chain 13723 chr11 135006516 + 68812612 68813609 MER41C 542 - 0 542 145532 120 805 350 72 chain 4357 chr11 135006516 + 68813440 68813489 MER41C 542 - 471 520 202479 49 chain 27073 chr11 135006516 + 68858148 68858434 AluYb9 318 + 29 315 96028 286 chain 60955 chr11 135006516 + 68916480 68917226 LTR12 884 - 8 884 52355 226 5 6 233 0 1 10 0 22 194 0 107 52 1 0 25 chain 9932 chr11 135006516 + 68930546 68930676 MER85 139 - 1 139 160922 38 0 10 38 2 0 52 chain 30063 chr11 135006516 + 68937863 68938296 MLT2A1 477 + 0 477 84624 164 2 0 5 4 1 12 0 1 15 1 2 93 0 1 4 12 11 63 0 7 8 4 0 6 6 50 34 chain 5728 chr11 135006516 + 68942226 68942507 MLT1J2 417 - 113 373 187865 36 195 174 50 chain 3533 chr11 135006516 + 68962035 68962212 HAL1-2a_MD 234 - 99 168 214834 18 9 0 8 72 0 14 0 3 6 30 0 20 chain 2934 chr11 135006516 + 68962513 68962578 HAL1-2a_MD 234 - 91 141 226441 14 16 4 17 3 0 15 chain 3368 chr11 135006516 + 68995179 68995238 MLT2B4 540 - 4 49 217716 34 14 0 11 chain 24571 chr11 135006516 + 69029234 69029542 AluSg7 307 - 0 307 107134 94 2 0 7 1 2 204 chain 3833 chr11 135006516 + 69037004 69037061 MIRb 242 + 53 108 209877 13 4 2 40 chain 2614 chr11 135006516 + 69058769 69058837 MIR 256 + 115 185 231497 28 26 28 14 chain 24193 chr11 135006516 + 69159429 69159785 THE1D 372 - 7 372 109258 52 0 2 117 31 37 53 3 4 100 chain 18118 chr11 135006516 + 69180128 69180665 Tigger2a 444 - 3 444 132549 22 115 123 34 28 20 25 3 6 102 3 1 10 105 8 90 chain 21263 chr11 135006516 + 69256596 69256848 AluSp 311 + 50 302 122984 252 chain 3038 chr11 135006516 + 69268237 69268269 MLT2D 439 - 2 34 224234 32 chain 10234 chr11 135006516 + 69329905 69330043 MSTA 426 + 24 167 159449 109 2 0 10 0 7 17 chain 34216 chr11 135006516 + 69405015 69405409 L1PA5 6144 + 5738 6132 77330 394 chain 15623 chr11 135006516 + 69471311 69471642 THE1B 368 - 28 368 139515 28 7 6 26 9 10 28 66 73 32 0 11 11 17 8 107 chain 3536 chr11 135006516 + 69520370 69520417 UCON16 145 - 17 63 214772 30 1 0 16 chain 25989 chr11 135006516 + 69528156 69528457 AluYk4 311 - 11 311 100058 171 1 0 129 chain 5709 chr11 135006516 + 69539861 69539941 MADE1 96 - 0 96 188023 37 1 17 42 chain 20023 chr11 135006516 + 69544749 69545117 THE1C 375 - 0 375 127074 25 1 0 43 0 1 64 11 17 19 27 27 26 19 0 9 19 39 105 chain 24150 chr11 135006516 + 69579989 69580294 AluSp 311 + 0 302 109471 56 5 1 157 0 1 87 chain 5689 chr11 135006516 + 69580699 69580808 MER44B 551 + 336 459 188210 31 14 24 39 8 12 17 chain 11903 chr11 135006516 + 69601400 69601589 MER30 238 + 37 235 152586 65 3 0 5 4 0 15 20 36 77 chain 30074 chr11 135006516 + 69621516 69621922 MLT2A1 477 + 0 410 84590 17 0 4 119 1 2 26 1 5 150 1 0 62 4 0 25 chain 24422 chr11 135006516 + 69650558 69650862 AluSc5 308 - 15 308 107959 8 10 0 30 1 0 255 chain 22706 chr11 135006516 + 69691535 69691822 AluSp 311 + 8 287 117045 86 6 0 38 2 0 155 chain 27773 chr11 135006516 + 69701577 69701870 AluYa5 310 + 10 303 93791 293 chain 35578 chr11 135006516 + 69787143 69787708 L1PB1 5432 - 12 544 75438 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 13 1 16 1 0 44 1 0 15 2 1 50 3 1 10 7 3 9 2 1 12 1 0 20 3 0 8 2 3 215 chain 25612 chr11 135006516 + 69822346 69822642 AluYk4 311 + 13 311 101666 100 0 2 196 chain 4945 chr11 135006516 + 69848608 69848665 Tigger3a 397 + 196 253 195756 57 chain 14879 chr11 135006516 + 69855900 69856239 L1PB1 5432 - 10 318 141687 4 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 15 9 0 15 2 0 6 14 13 41 5 4 11 2 1 51 3 1 9 18 13 8 1 0 24 chain 39877 chr11 135006516 + 69881642 69882147 L1PA8 5853 - 3 514 69492 88 1 0 21 2 1 52 1 0 9 1 0 9 0 13 48 2 0 45 1 0 225 chain 9219 chr11 135006516 + 69921468 69921573 U6 107 + 0 105 164454 105 chain 12687 chr11 135006516 + 69942470 69942685 MER1B 344 + 36 250 149497 97 45 44 73 chain 4434 chr11 135006516 + 69992107 69992162 MIR 256 + 72 127 201533 55 chain 13942 chr11 135006516 + 70022035 70022224 MER4B 649 - 24 216 144780 30 0 4 11 0 1 17 1 0 85 1 0 44 chain 25438 chr11 135006516 + 70060072 70060467 LTR7 482 - 17 482 102503 173 0 31 36 0 1 39 51 0 33 9 98 54 chain 27177 chr11 135006516 + 70060475 70060776 AluYk4 311 - 10 311 95676 301 chain 294183 chr11 135006516 + 70062033 70065859 HERVH-int 3825 - 0 3825 13753 139 0 110 130 5 7 334 0 19 693 6 0 7 0 6 147 0 1 130 11 16 32 6 7 43 3 7 116 0 30 71 0 1 309 1 0 10 0 2 27 9 0 652 1 0 68 67 2 10 2 1 15 2 0 27 1 0 25 19 46 14 2 1 21 129 8 9 1 0 532 chain 5609 chr11 135006516 + 70074372 70074468 MER30 238 - 30 150 188989 35 4 12 34 4 0 7 0 20 12 chain 13943 chr11 135006516 + 70100188 70100364 AluSq10 312 - 24 201 144779 79 4 5 93 chain 23739 chr11 135006516 + 70134175 70134475 AluSg7 307 - 4 307 111840 73 0 1 74 2 3 25 0 1 126 chain 173680 chr11 135006516 + 70140658 70142841 SVA_D 2077 - 0 2077 21625 7 2 0 309 1 0 355 14 13 4 0 1 80 0 1 8 11 37 4 0 1 154 1 0 10 1 0 55 77 2 6 1 0 37 1 0 46 3 0 4 8 0 23 4 5 153 40 0 737 6 7 13 3 0 5 chain 5498 chr11 135006516 + 70141674 70141751 SVA_D 2077 - 863 940 71464 77 chain 22201 chr11 135006516 + 70154167 70154453 AluSp 311 - 25 311 119342 135 3 0 6 5 8 137 chain 4173 chr11 135006516 + 70207347 70207476 MER2 342 - 19 148 204929 43 13 59 9 46 0 18 chain 42936 chr11 135006516 + 70236956 70237838 MER41A 554 - 0 554 65495 131 18 15 72 3 0 148 322 0 188 chain 7172 chr11 135006516 + 70265554 70265644 FLAM_A 137 - 19 109 176258 90 chain 7689 chr11 135006516 + 70288487 70288603 AluJr4 308 + 165 286 172993 72 17 22 27 chain 3371 chr11 135006516 + 70288838 70288875 MSTB1 431 - 13 50 217650 37 chain 21708 chr11 135006516 + 70290528 70290851 AluY 311 + 1 305 121356 51 12 5 70 5 0 12 4 7 137 10 0 22 chain 73516 chr11 135006516 + 70302395 70303319 SVA_A 1864 - 0 893 46778 14 0 1 522 50 22 154 11 7 173 chain 21988 chr11 135006516 + 70365486 70365767 AluSp 311 + 10 297 120276 34 14 20 233 chain 28877 chr11 135006516 + 70380202 70380578 THE1C 375 - 0 375 89558 30 1 0 254 14 0 8 1 15 68 chain 28209 chr11 135006516 + 70401853 70402224 Tigger1 2417 + 611 983 92272 210 7 8 154 chain 20505 chr11 135006516 + 70412014 70412376 THE1B 368 - 0 368 125614 56 11 10 59 60 66 60 9 10 107 chain 22516 chr11 135006516 + 70422472 70422747 AluY 311 + 15 288 117960 108 3 0 7 1 2 156 chain 51849 chr11 135006516 + 70435224 70435975 Tigger1 2417 + 988 1745 57722 174 0 1 86 3 0 5 4 0 44 1 0 89 0 3 9 23 24 30 5 6 214 15 23 49 chain 28708 chr11 135006516 + 70445430 70445740 AluYf4 310 + 0 310 90301 310 chain 19432 chr11 135006516 + 70463889 70464104 L1PA4 6152 + 5937 6152 128865 215 chain 3482 chr11 135006516 + 70548137 70548248 HAL1-2a_MD 234 + 9 188 215644 18 54 0 24 0 122 15 chain 6971 chr11 135006516 + 70551273 70551365 HY3 101 - 1 92 177675 42 2 1 48 chain 53802 chr11 135006516 + 70604070 70604761 LTR17 781 + 0 757 56476 206 0 1 120 1 0 146 3 0 46 4 3 11 1 0 23 0 49 105 0 22 25 chain 4228 chr11 135006516 + 70604908 70604982 MER49 923 + 4 94 204195 26 12 28 36 chain 7525 chr11 135006516 + 70619783 70619876 L1MB7 1623 + 1082 1175 174008 93 chain 15158 chr11 135006516 + 70627699 70627876 L1PA5 6144 - 8 187 140883 164 1 3 12 chain 26299 chr11 135006516 + 70627876 70628175 L1PA5 6144 + 5643 5942 98836 299 chain 6677 chr11 135006516 + 70639260 70639478 MER8 282 + 0 260 179848 60 93 141 15 0 5 14 18 7 18 chain 2991 chr11 135006516 + 70695975 70696076 L1MB3 1562 - 15 116 225213 17 51 51 33 chain 18863 chr11 135006516 + 70750519 70751115 THE1B 368 + 0 368 130479 15 3 1 22 2 7 19 0 1 25 316 73 5 1 0 24 0 2 115 0 10 49 chain 23410 chr11 135006516 + 70758422 70758711 THE1A 353 + 0 286 113599 110 1 0 92 2 0 84 chain 3395 chr11 135006516 + 70800005 70800049 MSTB1 431 + 163 206 217174 8 1 0 35 chain 24752 chr11 135006516 + 70829340 70829723 THE1D 372 - 2 372 106159 177 5 8 22 3 0 54 0 2 7 1 4 17 0 7 6 34 9 57 chain 26971 chr11 135006516 + 70832507 70832815 L1PA6 6164 - 894 1202 96369 308 chain 76368 chr11 135006516 + 70832816 70833692 L1PA6 6164 + 5279 6154 45280 697 1 0 178 chain 13650 chr11 135006516 + 70850398 70850558 L1PA4 6152 + 5991 6151 145777 160 chain 5708 chr11 135006516 + 70852576 70852658 THE1B 368 + 222 302 188038 10 1 0 9 4 3 58 chain 12440 chr11 135006516 + 70868029 70868163 L1PA5 6144 + 6001 6135 150493 134 chain 58070 chr11 135006516 + 70872039 70872940 MER4D1 891 + 0 883 53940 25 9 10 11 1 0 4 12 8 131 1 0 117 4 3 233 0 2 58 0 2 56 44 34 37 16 7 56 0 1 5 12 13 60 0 1 9 chain 160935 chr11 135006516 + 70877836 70879877 SVA_D 2077 - 1 2061 23206 426 0 1 123 0 3 78 1 0 7 0 98 288 169 16 6 1 0 60 31 74 135 3 0 35 0 3 592 0 27 44 0 2 42 chain 9291 chr11 135006516 + 70878759 70878928 SVA_D 2077 - 898 940 101629 16 127 0 26 chain 2802 chr11 135006516 + 70878857 70878888 SVA_D 2077 - 869 900 228709 31 chain 5553 chr11 135006516 + 70929218 70929287 Tigger3b 1229 + 695 765 189544 11 0 1 58 chain 3827 chr11 135006516 + 70948371 70948419 MER58A 224 + 44 91 209976 20 1 0 27 chain 8788 chr11 135006516 + 70949945 70950048 LTR5_Hs 974 - 0 103 166724 103 chain 41811 chr11 135006516 + 70984705 70985311 LTR10E 629 - 30 629 66877 29 20 17 19 1 0 158 1 0 16 2 1 61 3 2 122 17 14 87 0 2 5 2 1 54 0 1 4 0 1 5 chain 20936 chr11 135006516 + 70986208 70986444 L1PA4 6152 + 5915 6151 124162 236 chain 14882 chr11 135006516 + 70988972 70989200 Tigger1 2417 + 2063 2287 141684 108 12 13 30 7 0 18 1 2 16 0 1 36 chain 3456 chr11 135006516 + 70992301 70992345 MER20 218 + 96 140 216063 44 chain 3035 chr11 135006516 + 71003043 71003077 L1M1 2793 - 783 817 224285 34 chain 6985 chr11 135006516 + 71018774 71018856 MER49 923 - 674 756 177577 82 chain 24913 chr11 135006516 + 71040338 71040745 MER1A 529 - 22 466 105257 36 23 13 55 4 1 10 4 11 11 0 3 224 23 63 17 chain 13763 chr11 135006516 + 71049349 71049541 LTR71B 605 - 401 605 145394 56 3 0 5 16 31 112 chain 27117 chr11 135006516 + 71066593 71066975 MLT2A1 477 - 93 477 95878 34 0 1 25 1 0 87 20 17 47 1 5 25 0 1 142 chain 32790 chr11 135006516 + 71078172 71078533 L1PA4 6152 - 9 370 79549 361 chain 2690 chr11 135006516 + 71092482 71092539 MER53 195 - 98 158 230336 25 8 12 13 1 0 10 chain 9857 chr11 135006516 + 71116054 71116227 MER1A 529 - 0 250 161306 55 15 18 43 4 79 27 4 3 25 chain 3249 chr11 135006516 + 71172426 71172462 MSTA 426 - 202 238 220020 36 chain 15385 chr11 135006516 + 71180994 71181351 THE1B 368 - 0 368 140244 55 15 14 46 134 146 107 chain 29759 chr11 135006516 + 71216550 71216948 LTR7 482 + 0 470 85605 69 8 46 109 8 40 122 0 2 82 chain 545909 chr11 135006516 + 71222093 71228243 L1PA4 6152 + 8 6152 1956 572 1 0 482 0 2 62 0 1 117 1 0 1144 0 1 90 10 0 325 0 1 1174 3 0 365 0 4 576 5 0 377 0 3 824 0 5 13 3 0 6 chain 82466 chr11 135006516 + 71245748 71246740 LTR5B 1012 + 0 1012 42560 123 0 14 265 0 5 82 1 0 514 0 2 7 chain 11183 chr11 135006516 + 71255214 71255394 MER4E 760 - 8 191 155501 27 6 10 10 15 14 122 chain 56256 chr11 135006516 + 71255417 71256168 MER4E1 777 + 17 777 54992 41 0 4 170 0 1 99 1 20 84 0 1 14 0 1 5 10 9 75 3 0 6 11 0 188 2 0 42 chain 26320 chr11 135006516 + 71256947 71257386 LTR12F 595 - 9 584 98741 47 16 6 56 3 0 6 0 3 11 9 8 58 1 2 24 0 1 72 14 166 22 20 13 80 chain 29481 chr11 135006516 + 71265164 71265472 AluYa5 310 - 2 310 86713 308 chain 24397 chr11 135006516 + 71268958 71269350 MER83 447 - 50 447 108093 154 14 21 49 25 30 10 9 0 25 1 3 105 chain 346726 chr11 135006516 + 71297065 71301123 HERVE-int 4064 + 0 4064 11700 545 14 11 255 3 0 722 1 2 675 3 0 156 1 0 7 0 1 124 2 3 250 0 1 644 0 10 33 0 3 34 1 0 588 chain 81565 chr11 135006516 + 71310427 71311435 LTR5A 1029 + 7 1029 42947 128 1 14 310 0 1 569 chain 338480 chr11 135006516 + 71322628 71326679 HERVE-int 4064 + 0 4064 11944 58 0 2 227 7 0 356 14 17 98 10 10 45 4 1 719 1 2 170 0 13 149 0 1 237 1 0 398 2 0 321 0 7 179 7 9 344 0 1 41 2 0 72 1 0 123 2 1 463 chain 21219 chr11 135006516 + 71334217 71334521 AluSp 311 - 6 311 123149 20 2 0 144 19 23 10 1 0 108 chain 85289 chr11 135006516 + 71337042 71338072 LTR5A 1029 + 0 1029 41425 147 1 0 882 chain 105805 chr11 135006516 + 71341763 71343159 LTR12C 1709 - 0 1709 35302 84 2 1 63 1 0 333 11 4 6 1 0 100 4 2 4 1 0 129 0 278 236 1 0 1 0 4 85 0 43 37 8 13 9 4 0 16 1 2 259 chain 12344 chr11 135006516 + 71357696 71357857 L1MA8 2339 - 250 408 150849 80 1 0 55 2 0 23 chain 17297 chr11 135006516 + 71360801 71361061 L1PA8 5853 - 11 267 134792 82 1 0 19 2 1 32 1 0 4 8 9 13 1 0 71 6 5 20 chain 4458 chr11 135006516 + 71373664 71373715 MADE1 96 + 45 96 201254 51 chain 83964 chr11 135006516 + 71384713 71385734 LTR5A 1029 - 0 1029 41916 60 2 4 14 0 6 767 0 1 30 2 1 146 chain 31174 chr11 135006516 + 71386179 71386634 HERVK-int 6823 - 1242 1698 82215 53 44 42 8 0 1 4 1 0 198 0 3 105 4 3 4 0 1 34 chain 9586 chr11 135006516 + 71408723 71408837 LTR2 463 + 241 355 162659 114 chain 75953 chr11 135006516 + 71412585 71413661 MER11A 1151 - 8 1151 45511 147 13 15 60 0 1 37 18 0 21 8 15 10 24 0 147 5 6 145 0 1 94 0 1 149 4 0 64 1 0 53 1 100 10 1 3 64 chain 5323 chr11 135006516 + 71416224 71416324 MER58A 224 + 17 115 191794 17 4 0 9 3 4 45 4 5 18 chain 122992 chr11 135006516 + 71419020 71420759 HERVS71-int 4705 + 647 2302 30051 8 1 0 5 4 0 12 7 4 5 1 0 17 6 4 18 16 10 10 8 4 10 2 0 6 75 27 21 4 0 148 2 0 6 8 3 637 1 0 374 2 1 325 chain 47047 chr11 135006516 + 71423922 71424472 LTR6B 557 + 0 557 61168 333 0 1 34 0 5 27 0 1 156 chain 31143 chr11 135006516 + 71426005 71426429 MER4A1 472 - 2 437 82267 17 0 4 197 24 26 27 0 3 94 0 2 65 chain 530253 chr11 135006516 + 71434773 71440880 L1PA4 6152 + 0 6143 4157 724 0 1 7 1 0 4 0 1 130 0 27 1285 0 2 908 1 0 689 0 1 164 0 1 172 0 2 225 0 1 1040 1 0 23 0 3 733 chain 76367 chr11 135006516 + 71448972 71452156 HERVH-int 3825 + 0 3271 14084 333 1 0 136 1 0 4 4 61 36 2 1 9 1 0 12 37 64 40 2 1 14 54 13 5 1 0 26 0 1 23 1 0 250 0 1 1031 4 0 31 8 13 297 1 49 820 chain 338605 chr11 135006516 + 71453248 71457316 HERVE-int 4064 + 0 4051 11936 386 0 1 425 1 2 680 0 1 38 26 1 333 0 2 19 0 1 316 10 11 21 0 1 136 0 1 238 1 2 791 2 0 645 chain 42184 chr11 135006516 + 71459976 71460472 LTR2C 499 + 0 499 66416 110 0 1 66 1 4 76 1 0 152 0 1 25 1 0 64 chain 13192 chr11 135006516 + 71460472 71461022 HERVH-int 3825 + 3271 3825 14084 313 1 5 236 chain 74239 chr11 135006516 + 71461627 71462672 MER11C 1089 + 0 1063 46395 247 7 16 54 0 4 65 1 0 149 70 69 86 1 5 4 1 0 38 0 1 5 0 2 120 1 2 53 1 0 117 0 1 25 chain 19891 chr11 135006516 + 71474692 71474921 AluY 311 + 16 245 127512 229 chain 55470 chr11 135006516 + 71478288 71478950 LTR5_Hs 974 - 303 974 55428 15 1 0 188 0 1 177 0 1 161 5 13 115 chain 20799 chr11 135006516 + 71485219 71485596 MER66B 489 + 52 448 124605 150 6 5 4 0 1 59 69 90 39 12 10 38 chain 14810 chr11 135006516 + 71486207 71486388 LTR12C 1709 + 769 949 141912 68 1 0 112 chain 46187 chr11 135006516 + 71528271 71528868 PRIMA4_LTR 623 + 0 623 61862 169 6 29 63 4 5 125 0 1 41 3 4 186 chain 16348 chr11 135006516 + 71538508 71538839 THE1B 368 - 20 368 137349 55 1 0 26 74 90 61 4 5 16 7 8 12 0 1 26 0 1 34 2 0 13 chain 125495 chr11 135006516 + 71541852 71543302 SVA_C 1631 + 25 1616 29244 12 15 7 10 4 0 51 0 1 506 0 1 33 0 117 154 0 34 665 chain 13266 chr11 135006516 + 71554347 71554813 LTR12D 1347 - 170 758 147228 50 150 375 33 134 31 99 chain 5636 chr11 135006516 + 71554609 71554670 LTR12D 1347 - 824 885 188706 61 chain 191137 chr11 135006516 + 71557088 71559698 L1PA8 5853 - 5 3835 19947 42 12 13 33 1 0 17 1 0 41 24 23 71 2 0 5 23 3 36 1 0 95 0 1 107 1 0 265 0 53 30 5 8 309 2 0 99 6 679 46 1 2 99 3 510 269 0 1 58 0 4 174 0 1 5 2 0 90 0 2 373 6 10 256 chain 4836 chr11 135006516 + 71576593 71576652 MER41A 554 - 98 157 196956 59 chain 338591 chr11 135006516 + 71597079 71601130 HERVE-int 4064 + 0 4064 11937 34 0 1 264 0 1 513 4 1 719 1 2 600 6 7 69 3 0 229 7 8 104 0 6 5 6 0 430 0 4 211 5 6 182 1 11 70 1 0 587 chain 82359 chr11 135006516 + 71610414 71611428 LTR5A 1029 + 0 1029 42603 19 0 2 118 1 14 876 chain 323036 chr11 135006516 + 71619536 71623368 HERVE-int 4064 + 0 3843 12481 299 0 1 513 4 1 710 19 22 665 18 15 55 1 3 567 0 2 543 0 10 71 1 0 366 chain 3799 chr11 135006516 + 71666117 71666239 MER96 175 + 0 133 210404 22 52 53 14 5 15 29 chain 5841 chr11 135006516 + 71672665 71672738 L1M4c 1769 + 1654 1727 186757 73 chain 28614 chr11 135006516 + 71677909 71678216 AluYb8 318 - 11 318 90681 307 chain 9757 chr11 135006516 + 71681130 71681322 L1MB2 1706 + 1430 1638 161813 21 0 3 33 0 5 63 54 62 21 chain 25078 chr11 135006516 + 71793910 71794197 AluSp 311 - 11 298 104416 287 chain 11717 chr11 135006516 + 71828760 71829029 MLT1D 503 + 76 349 153393 31 1 0 7 14 24 21 89 84 106 chain 18469 chr11 135006516 + 71829697 71830015 MER51D 577 - 196 527 131585 44 1 0 41 3 11 157 58 64 14 chain 52326 chr11 135006516 + 71859122 71863271 PABL_A-int 1935 - 66 1682 57416 14 1 0 18 1 0 105 2200 326 116 11 12 16 1009 303 12 0 89 21 0 3 16 0 2 5 2 0 32 3 4 143 1 0 24 0 6 6 8 0 29 39 0 99 0 3 29 0 2 18 40 29 13 6 11 24 1 0 7 1 0 79 chain 29229 chr11 135006516 + 71861604 71861912 AluYb8 318 - 10 318 87914 308 chain 64139 chr11 135006516 + 71864970 71865729 LTR17 781 + 0 781 50943 222 1 2 103 1 0 401 0 22 31 chain 44182 chr11 135006516 + 71868619 71869187 MER4E1 777 + 17 587 63968 163 9 0 49 0 2 103 0 2 109 0 6 89 5 6 41 chain 145979 chr11 135006516 + 71874216 71878492 MER61-int 3695 - 0 2442 25173 47 6 0 50 0 1 164 1 3 19 5 6 58 1 0 190 6 7 250 4 3 20 1923 150 105 2 0 6 9 8 35 18 14 116 0 8 123 5 6 49 13 12 22 1 4 36 0 2 49 1 0 279 301 236 45 9 7 164 0 4 144 chain 75992 chr11 135006516 + 71875417 71876385 LTR5_Hs 974 + 0 974 45488 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 15477 chr11 135006516 + 71876480 71876657 AluSc5 308 - 0 177 139973 177 chain 118652 chr11 135006516 + 71879628 71881514 THE1B-int 1605 + 17 1605 31553 252 0 1 92 332 0 68 1 26 114 18 21 84 0 4 393 11 12 4 1 0 164 0 1 75 0 1 41 9 8 227 chain 87619 chr11 135006516 + 71886455 71887454 L1PA5 6144 - 14 1016 40526 125 0 3 208 0 1 499 1 0 166 chain 19582 chr11 135006516 + 71920167 71920546 THE1D 372 + 0 372 128427 40 59 51 70 31 37 6 4 0 20 1 0 148 chain 22887 chr11 135006516 + 71924853 71925128 AluY 311 + 25 299 116154 107 0 1 136 2 0 30 chain 23079 chr11 135006516 + 71974611 71974961 THE1D 372 + 0 370 115254 40 0 6 26 4 14 18 1 0 35 0 1 27 28 32 26 1 0 47 1 2 96 chain 2999 chr11 135006516 + 71975244 71975287 HAL1 992 - 526 569 225038 9 0 1 4 1 0 29 chain 25730 chr11 135006516 + 71975359 71975728 THE1D 372 + 0 372 101162 71 9 10 92 18 20 179 chain 88185 chr11 135006516 + 72076613 72078207 L1PA16 3655 + 2252 3520 40303 11 0 1 38 0 1 77 0 1 294 2 1 152 2 0 36 347 0 30 1 0 4 1 0 10 0 3 6 2 0 10 1 0 4 5 10 134 4 29 96 0 4 86 2 0 69 39 30 131 chain 25029 chr11 135006516 + 72094294 72094592 AluY 311 + 8 300 104642 115 9 3 174 chain 15511 chr11 135006516 + 72127819 72128353 L1MB7 1623 + 1085 1527 139851 47 0 1 51 94 63 18 58 48 10 1 0 14 18 16 10 3 1 12 1 0 47 1 0 5 47 13 10 5 2 9 1 2 15 1 0 13 4 0 7 1 0 19 3 0 9 chain 12284 chr11 135006516 + 72135262 72135522 LTR23 429 + 43 274 151065 37 30 25 34 24 1 27 9 6 49 0 2 34 0 1 4 2 1 10 chain 22374 chr11 135006516 + 72156121 72156596 LOR1b 457 - 0 457 118610 34 120 84 108 2 1 28 14 24 35 2 1 100 10 20 22 chain 3692 chr11 135006516 + 72200643 72200709 L1PB1 5432 + 5366 5427 212050 4 1 0 20 2 1 13 1 0 18 2 0 5 chain 164719 chr11 135006516 + 72212553 72214573 SVA_F 1814 - 0 1814 22696 628 49 0 158 175 0 28 0 1 36 0 15 11 0 1 355 0 1 580 chain 4050 chr11 135006516 + 72213181 72213230 SVA_F 1814 - 677 868 138747 15 0 1 33 0 141 1 chain 2372 chr11 135006516 + 72213388 72213421 SVA_F 1814 - 899 932 160270 33 chain 8817 chr11 135006516 + 72213421 72213563 SVA_F 1814 - 693 835 101524 110 1 0 16 0 1 15 chain 10487 chr11 135006516 + 72216604 72216740 MSTB 430 - 0 137 158297 65 1 2 70 chain 12068 chr11 135006516 + 72218693 72218856 MER30 238 + 59 238 151907 46 4 21 60 1 0 52 chain 13206 chr11 135006516 + 72219361 72219545 MSTB-int 1649 - 1465 1649 147437 47 14 14 123 chain 4149 chr11 135006516 + 72219950 72219998 L1PA13 3608 - 2999 3047 205255 48 chain 19701 chr11 135006516 + 72226143 72226388 L1PA15 4387 + 2700 2945 128097 245 chain 13265 chr11 135006516 + 72233936 72234106 LTR1 825 - 644 825 147229 15 2 1 87 0 12 66 chain 15003 chr11 135006516 + 72243220 72243451 L1P4 1494 - 1172 1401 141312 64 0 1 11 12 11 85 6 5 18 1 0 34 chain 3470 chr11 135006516 + 72265177 72265260 MLT1C 463 - 7 91 215813 15 30 31 38 chain 43799 chr11 135006516 + 72265905 72266672 L1PB1 5432 - 14 726 64450 14 1 0 12 1 0 22 1 0 24 2 0 10 13 10 15 9 0 11 2 0 4 1 0 15 1 0 45 6 5 10 2 1 52 2 0 7 9 5 10 1 0 9 35 16 5 0 3 10 7 0 141 1 0 148 1 9 11 14 5 83 chain 37568 chr11 135006516 + 72275571 72276033 LTR2 463 + 0 463 72723 127 0 3 16 1 0 61 1 0 147 0 1 7 1 0 101 chain 36385 chr11 135006516 + 72278114 72278603 MER1A 529 - 8 495 74382 55 7 9 321 20 16 86 chain 58509 chr11 135006516 + 72283381 72284098 MER4E 760 - 23 735 53694 203 2 1 99 1 0 71 0 2 46 4 0 151 1 0 139 chain 2922 chr11 135006516 + 72366684 72366717 MIRc 230 + 83 116 226647 33 chain 24026 chr11 135006516 + 72411767 72412047 AluSp 311 + 1 286 110182 121 0 5 159 chain 2916 chr11 135006516 + 72453769 72453801 MIRb 242 + 93 125 226756 32 chain 9169 chr11 135006516 + 72477048 72477159 HY1 111 + 0 111 164705 111 chain 14542 chr11 135006516 + 72510470 72510730 MER65A 464 - 0 274 142750 17 0 6 59 23 25 38 2 0 58 23 31 40 chain 24861 chr11 135006516 + 72512881 72513183 AluY 311 + 1 310 105563 46 4 10 75 0 1 177 chain 7593 chr11 135006516 + 72580588 72580679 U6 107 - 0 91 173592 91 chain 178100 chr11 135006516 + 72616491 72618643 L1PA6 6164 - 5 2264 21154 663 0 4 19 11 15 65 0 2 69 0 4 403 2 4 281 8 9 59 0 49 28 0 28 89 9 22 446 chain 21038 chr11 135006516 + 72619007 72620078 L1MA3 4352 - 219 968 33225 20 3 0 8 35 13 59 1 0 12 7 6 434 3 1 125 293 0 71 chain 145227 chr11 135006516 + 72620095 72621885 SVA_A 1864 + 8 1864 25289 12 8 6 20 0 10 561 3 37 66 7 80 85 1 0 23 3 0 37 3 0 42 42 1 147 2 0 8 1 0 93 13 11 177 0 4 436 chain 1538 chr11 135006516 + 72620966 72620997 SVA_A 1864 + 577 608 138731 31 chain 56790 chr11 135006516 + 72621894 72624785 L1MA3 4352 - 968 3024 33225 207 0 4 32 4 5 95 0 4 22 3 1 130 3 9 77 3 8 10 12 4 190 1 0 19 1913 1070 42 8 9 79 5 7 12 5 1 19 chain 51882 chr11 135006516 + 72639769 72640336 L1PA4 6152 - 1 568 57694 567 chain 228107 chr11 135006516 + 72655037 72657590 L1PA4 6152 + 3581 6141 17409 1036 0 1 145 0 1 540 0 4 693 0 1 139 chain 4657 chr11 135006516 + 72660106 72660167 L1MB5 1630 - 18 78 198988 11 1 0 49 chain 39404 chr11 135006516 + 72668078 72668504 L1PA2 6032 - 1 427 70157 426 chain 6041 chr11 135006516 + 72673429 72673514 Charlie1b 519 + 429 515 184886 28 2 3 55 chain 24842 chr11 135006516 + 72678864 72679153 AluY 311 + 10 300 105667 122 0 1 167 chain 62887 chr11 135006516 + 72688574 72689365 L1PA5 6144 + 5387 6144 51494 52 49 0 121 1 13 202 0 2 284 0 1 82 chain 3038 chr11 135006516 + 72688641 72688673 U6 107 - 75 107 224222 32 chain 310875 chr11 135006516 + 72701418 72704963 L1PA4 6152 + 2655 6152 12963 124 1 0 147 2 0 245 1 0 7 1 0 31 1 0 564 0 1 23 49 0 522 1 0 317 0 5 1176 0 1 261 0 1 72 chain 26627 chr11 135006516 + 72714533 72714814 AluYa5 310 - 13 294 97567 281 chain 75241 chr11 135006516 + 72756138 72756967 L1PA3long 6157 + 5322 6152 45904 748 0 1 81 chain 17551 chr11 135006516 + 72760556 72760742 L1HS 6032 + 5846 6032 134120 186 chain 4260 chr11 135006516 + 72761958 72762036 MER5C 305 + 43 123 203744 13 15 16 38 0 1 12 chain 510251 chr11 135006516 + 72772064 72778533 L1PA7 6471 + 5 6469 6139 234 55 63 102 2 0 54 1 0 15 1 0 104 3 0 71 2 1 93 10 15 344 5 6 108 0 4 34 21 40 368 4 5 105 1 2 1323 0 4 397 5 0 23 1 2 7 1 0 20 6 10 58 1 0 5 69 1 583 5 6 409 2 0 50 5 11 267 1 0 110 1 8 385 0 4 102 0 4 63 0 5 68 0 2 244 15 14 247 0 3 112 0 1 78 0 1 69 chain 16395 chr11 135006516 + 72799261 72799481 Tigger3c 601 + 356 588 137222 27 5 9 102 0 8 86 chain 28516 chr11 135006516 + 72801261 72801569 AluYa5 310 - 2 310 91115 308 chain 28517 chr11 135006516 + 72819596 72819915 AluYb8 318 - 7 318 91111 11 5 0 174 3 0 126 chain 3070 chr11 135006516 + 72830819 72830855 L1ME4a 557 + 254 290 223572 36 chain 19985 chr11 135006516 + 72830908 72831258 THE1A 353 - 0 340 127191 49 13 5 58 1 0 27 20 14 66 27 26 59 0 6 30 chain 35321 chr11 135006516 + 72835049 72835459 L1PA5 6144 + 5728 6138 75769 410 chain 28674 chr11 135006516 + 72937972 72938350 L1PA7 6471 - 4 377 90432 10 7 0 140 4 5 190 0 1 27 chain 27066 chr11 135006516 + 72962981 72963278 AluYk4 311 + 0 296 96053 53 1 0 243 chain 22495 chr11 135006516 + 72971740 72972010 AluSc 308 + 25 297 118048 248 3 5 19 chain 2947 chr11 135006516 + 72974888 72974919 MIRb 242 + 101 132 226153 31 chain 19223 chr11 135006516 + 73170330 73170560 AluY 311 + 82 310 129459 218 2 0 10 chain 20535 chr11 135006516 + 73195844 73196177 MLT2A2 560 - 107 559 125532 37 0 107 6 0 2 5 1 2 62 35 39 15 10 15 162 chain 15819 chr11 135006516 + 73206196 73206377 AluY 311 + 104 286 138898 22 0 1 159 chain 21557 chr11 135006516 + 73208696 73208951 L1PA6 6164 + 5904 6159 121935 255 chain 490224 chr11 135006516 + 73209260 73216160 L1PA8A 6298 + 42 6291 7354 16 2 1 5 3 0 7 2 0 9 5 0 14 10 7 14 2 0 7 1 0 12 8 0 14 1 0 9 3 2 11 1 0 4 4 3 12 3 1 14 2 0 4 1 0 12 25 38 7 1 0 43 1 0 20 17 10 28 0 1 40 2 0 15 16 13 76 0 1 167 1 0 44 0 3 122 0 8 7 6 7 105 1 0 87 4 0 79 3 0 43 2 3 520 0 3 199 0 1 133 316 0 458 4 0 347 0 2 65 0 1 83 0 1 104 0 1 191 310 0 57 1 2 5 1 0 12 9 6 61 1 9 203 10 11 147 12 8 78 1 0 857 1 2 32 10 12 27 1 0 90 12 4 59 0 4 507 2 1 78 0 2 330 3 1 34 0 1 355 chain 38186 chr11 135006516 + 73239234 73239734 MER41C 542 + 0 520 71861 49 0 1 151 2 0 106 0 17 13 1 5 178 chain 3904 chr11 135006516 + 73256411 73256460 L1MB8 1703 + 1509 1558 208784 49 chain 143843 chr11 135006516 + 73282257 73283918 SVA_D 2077 + 24 2060 25508 8 23 0 415 4 5 122 0 1 108 9 1 206 0 396 28 0 1 30 0 2 4 0 1 36 10 12 44 0 1 4 0 1 610 chain 24698 chr11 135006516 + 73320086 73320362 AluYc 301 + 7 285 106447 113 0 2 163 chain 26515 chr11 135006516 + 73348768 73349072 AluYk4 311 - 1 306 97992 56 0 1 248 chain 23534 chr11 135006516 + 73380918 73381212 AluSc5 308 - 15 308 112937 36 1 0 257 chain 4956 chr11 135006516 + 73381991 73382114 MSTB-int 1649 - 69 184 195639 19 17 14 10 1 0 22 2 0 17 12 10 23 chain 24791 chr11 135006516 + 73403714 73404031 AluY 311 + 1 310 105935 46 0 6 73 16 0 149 0 2 33 chain 24307 chr11 135006516 + 73417883 73418192 AluSp 311 + 0 311 108616 25 0 3 73 4 3 207 chain 136210 chr11 135006516 + 73485426 73486983 SVA_C 1631 + 0 1629 26795 13 7 0 7 0 1 829 5 1 134 0 4 13 1 2 10 4 81 534 chain 26698 chr11 135006516 + 73519684 73519982 AluSq10 312 + 0 297 97329 133 1 0 164 chain 21225 chr11 135006516 + 73521606 73521865 L1PA7 6471 - 1 262 123122 65 0 2 194 chain 19805 chr11 135006516 + 73543495 73543735 7SK 245 - 5 245 127796 240 chain 26576 chr11 135006516 + 73595908 73596187 AluYa5 310 - 15 294 97743 279 chain 12416 chr11 135006516 + 73605544 73605687 L1PA4 6152 + 6009 6152 150568 143 chain 164557 chr11 135006516 + 73607351 73609277 SVA_D 2077 - 7 2077 22736 422 0 1 192 1 0 13 0 49 5 1 0 31 1 0 107 0 49 163 0 1 51 0 83 142 3 0 33 0 3 155 37 0 221 1 0 260 1 7 62 4 0 20 chain 1642 chr11 135006516 + 73608671 73608699 SVA_D 2077 - 1467 1495 131740 28 chain 3224 chr11 135006516 + 73626137 73626178 MIRb 242 + 79 122 220517 30 0 2 11 chain 23500 chr11 135006516 + 73637160 73637442 AluSp 311 - 21 311 113128 221 8 16 53 chain 21176 chr11 135006516 + 73637479 73637759 AluY 311 + 0 288 123287 21 0 8 23 8 7 73 0 1 155 chain 168020 chr11 135006516 + 73646654 73648767 SVA_D 2077 - 2 2077 22282 132 0 20 516 191 14 4 0 1 197 20 0 136 3 139 859 1 0 16 0 4 30 1 0 7 chain 10378 chr11 135006516 + 73647303 73647493 SVA_D 2077 - 720 861 85173 32 49 0 109 chain 2912 chr11 135006516 + 73647335 73647384 SVA_D 2077 - 830 879 98470 49 chain 49272 chr11 135006516 + 73649934 73650539 LTR14B 630 - 0 607 59532 78 0 5 92 0 4 10 8 0 368 0 1 49 chain 108948 chr11 135006516 + 73656044 73657689 HERVK14-int 1672 - 9 1666 34452 4 1 0 122 0 3 15 1 0 9 7 5 20 7 30 41 1 0 11 2 1 5 0 1 14 27 26 48 1 0 203 1 0 32 17 12 49 0 8 22 1 0 163 1 0 203 2 1 48 9 8 151 2 3 61 5 4 6 1 0 18 30 29 199 1 0 36 24 22 24 chain 48701 chr11 135006516 + 73657896 73658519 LTR14B 630 - 0 621 59958 78 0 5 94 0 2 17 18 10 122 1 0 293 chain 24304 chr11 135006516 + 73660775 73661065 AluSz 310 + 5 294 108637 121 1 0 168 chain 32780 chr11 135006516 + 73664371 73664818 LTR2B 499 - 0 465 79564 182 1 0 6 4 5 12 6 8 153 3 22 42 3 0 35 chain 22768 chr11 135006516 + 73697092 73697372 AluSc 308 + 21 294 116734 267 7 0 6 chain 4823 chr11 135006516 + 73755518 73755572 L1MB8 1703 - 849 903 197095 54 chain 11889 chr11 135006516 + 73755795 73755957 L1PA16 3655 - 97 252 152653 148 7 0 7 chain 8122 chr11 135006516 + 73763050 73763143 MER85 139 - 46 139 170371 93 chain 5276 chr11 135006516 + 73769382 73769643 MIR 256 - 38 238 192243 59 183 122 19 chain 518519 chr11 135006516 + 73770709 73777119 L1PA5 6144 + 0 6144 5329 135 9 35 579 9 10 133 5 4 275 19 10 713 23 27 18 2 1 184 1 0 70 0 2 117 2 1 862 6 1 332 0 1 28 0 1 445 0 3 39 0 1 129 0 7 92 324 13 67 0 8 529 0 3 190 0 6 312 1 2 500 1 0 259 chain 27858 chr11 135006516 + 73774947 73775260 L1PA4 6152 - 1 317 93497 149 0 3 164 chain 28146 chr11 135006516 + 73777120 73777476 L1PA5 6144 + 5762 6139 92470 192 0 42 83 21 0 60 chain 12438 chr11 135006516 + 73777710 73777853 LTR70 1284 - 971 1114 150503 143 chain 24966 chr11 135006516 + 73788506 73788816 L1PA7 6471 + 6137 6453 104977 38 1 0 26 0 6 100 2 3 143 chain 47361 chr11 135006516 + 73792842 73793725 L1P1 4361 - 33 612 60924 23 1 0 75 4 0 80 1 0 133 302 0 53 1 5 210 chain 152479 chr11 135006516 + 73793742 73795485 L1PA6 6164 + 4409 6162 24286 270 1 0 140 0 1 1254 0 10 78 chain 2669 chr11 135006516 + 73810387 73810432 MIRc 230 - 99 145 230786 19 6 7 20 chain 15210 chr11 135006516 + 73822736 73822944 MER30 238 + 0 238 140746 18 4 18 71 4 20 111 chain 112757 chr11 135006516 + 73826559 73829093 L1PB1 5432 + 3856 5427 33459 542 22 23 205 3 0 177 0 1 8 7 6 285 628 13 22 1 0 4 4 2 12 18 12 52 2 1 16 1 0 44 1 0 10 28 17 17 340 21 24 1 0 22 1 0 12 1 0 19 1 0 4 chain 54250 chr11 135006516 + 73831177 73831826 L1PA6 6164 - 2 651 56198 151 3 0 5 1 4 489 chain 139021 chr11 135006516 + 73839612 73841174 SVA_D 2077 - 21 2071 26295 615 1 100 26 0 1 22 0 396 107 0 1 540 0 1 112 0 1 121 11 0 7 chain 4397 chr11 135006516 + 73841219 73841271 L1MB8 1703 - 1081 1133 201969 52 chain 23194 chr11 135006516 + 73874446 73874819 THE1C 375 + 0 375 114701 84 36 38 13 0 4 7 4 0 33 4 7 14 12 6 18 0 3 148 chain 29242 chr11 135006516 + 73892075 73892392 AluYb8 318 - 5 318 87838 181 4 0 132 chain 22767 chr11 135006516 + 73899227 73899529 AluSg7 307 - 6 307 116744 5 3 0 34 0 2 16 2 1 114 1 2 127 chain 26451 chr11 135006516 + 73901684 73902115 MSTB-int 1649 + 26 457 98236 127 1 0 100 76 74 17 5 8 105 chain 36716 chr11 135006516 + 73907581 73908096 MER41C 542 - 0 542 73934 118 0 3 59 30 51 48 0 1 8 1 0 4 0 1 199 0 1 27 0 1 21 chain 6797 chr11 135006516 + 73909809 73909885 5S 121 - 31 107 178973 76 chain 28232 chr11 135006516 + 73915577 73916053 MER65C 458 - 50 442 92188 51 5 0 49 1 0 58 74 0 137 4 0 67 1 2 4 1 0 24 chain 187803 chr11 135006516 + 73933989 73936016 L1PA2 6032 - 4 2030 20260 16 1 0 2010 chain 9707 chr11 135006516 + 73939495 73939620 MER85 139 - 1 137 162051 39 0 10 79 0 1 7 chain 88364 chr11 135006516 + 73991944 73992914 L1PA3long 6157 + 5168 6142 40240 142 0 4 828 chain 504644 chr11 135006516 + 74000492 74006113 L1PA4 6152 - 1 6152 6563 363 0 2 1808 0 1 2905 0 1 95 0 1 352 0 525 98 chain 115077 chr11 135006516 + 74038873 74040191 SVA_B 1603 + 44 1603 32764 440 0 1 116 5 42 111 9 213 9 1 0 627 chain 48013 chr11 135006516 + 74064380 74064930 SVA_B 1603 - 0 751 60476 533 0 201 17 chain 525940 chr11 135006516 + 74071486 74077417 L1PA5 6144 + 13 6144 4592 226 4 11 223 0 2 1362 0 1 57 0 4 428 0 156 448 1 0 256 0 19 167 0 9 300 2 0 564 0 1 1044 0 4 849 chain 26832 chr11 135006516 + 74100866 74101181 AluY 311 + 0 300 96863 126 15 0 174 chain 6971 chr11 135006516 + 74112428 74112588 Tigger3c 601 - 374 558 177681 48 61 85 51 chain 4611 chr11 135006516 + 74115502 74115550 MER66C 541 - 118 166 199506 48 chain 30344 chr11 135006516 + 74145071 74145389 AluYb9 318 + 0 318 83798 318 chain 8086 chr11 135006516 + 74192068 74192167 MER50 708 + 507 610 170563 70 0 4 29 chain 103537 chr11 135006516 + 74207937 74209456 Tigger4 2445 + 154 2360 35857 4 1 0 10 2 0 8 15 8 37 3 1 14 2 1 538 20 728 223 34 37 271 3 0 37 0 2 29 7 6 8 0 3 47 1 0 4 19 17 26 3 1 56 1 0 14 2 1 25 15 10 40 chain 278437 chr11 135006516 + 74224627 74228883 L1MA2 4263 + 4 4113 14727 15 1 0 35 0 8 43 2 0 6 11 12 38 3 1 92 1 0 79 1 0 26 19 21 78 0 1 19 28 26 43 230 0 505 6 12 45 1 3 92 0 1 115 1 94 13 10 1 5 0 3 282 0 2 57 0 3 67 0 3 18 0 4 14 0 3 85 9 0 113 0 1 4 1 0 118 4 19 415 6 4 40 36 4 291 1 0 54 19 20 187 7 8 13 0 21 181 0 5 6 1 0 4 30 17 85 6 3 75 1 0 146 3 0 88 21 20 14 12 14 12 2 1 9 1 0 92 7 0 47 1 0 8 chain 16815 chr11 135006516 + 74225173 74225395 MER30 238 - 0 238 136080 48 3 0 60 4 23 107 chain 288962 chr11 135006516 + 74237300 74240470 L1PA3long 6157 - 0 3169 14088 2586 1 0 583 chain 37815 chr11 135006516 + 74242012 74242474 LTR2 463 + 0 463 72391 362 12 13 88 chain 12536 chr11 135006516 + 74257527 74257678 LTR32 486 - 0 153 150097 122 0 2 29 chain 41282 chr11 135006516 + 74261004 74261553 MER41A 554 + 0 554 67555 87 5 6 79 1 0 110 1 0 145 1 2 39 3 8 78 chain 22863 chr11 135006516 + 74271521 74271826 AluSq 315 + 0 311 116267 45 0 1 24 6 11 52 0 2 166 2 0 10 chain 8853 chr11 135006516 + 74303362 74303479 MER44A 345 + 135 254 166363 14 3 5 100 chain 42778 chr11 135006516 + 74332917 74333387 L1PA3long 6157 - 0 470 65683 470 chain 25183 chr11 135006516 + 74369095 74369434 THE1A 353 - 2 346 103832 153 1 0 4 0 3 52 17 21 8 1 0 103 chain 132562 chr11 135006516 + 74369448 74371016 THE1A-int 1579 - 7 1579 27511 1130 6 8 285 0 1 70 0 1 28 1 0 4 0 1 44 chain 29292 chr11 135006516 + 74371016 74371371 THE1A 353 - 0 353 87613 155 1 0 88 1 0 110 chain 44852 chr11 135006516 + 74371372 74372761 L1M1 2793 - 1363 2252 63230 64 7 2 95 7 0 17 399 8 64 5 4 67 0 1 91 0 3 11 1 0 86 0 1 15 1 0 5 5 3 54 1 0 9 4 5 13 66 47 21 50 42 41 166 98 9 2 0 13 chain 22179 chr11 135006516 + 74382248 74382491 AluYb8 318 + 69 310 119444 54 2 0 187 chain 6986 chr11 135006516 + 74412628 74412713 MIR 256 + 63 148 177565 85 chain 36603 chr11 135006516 + 74451712 74452127 L1PA5 6144 - 1 416 74094 415 chain 489956 chr11 135006516 + 74468049 74473673 L1PA2 6032 - 8 6018 7368 1490 310 0 2902 0 8 838 0 688 84 chain 27016 chr11 135006516 + 74469550 74469848 AluYa5 310 - 15 310 96229 169 3 0 126 chain 7807 chr11 135006516 + 74493439 74493568 MER1B 344 + 135 263 172266 61 23 20 38 0 2 7 chain 79127 chr11 135006516 + 74508846 74509895 MER11C 1089 + 0 1072 43985 247 0 9 56 1 5 72 8 10 291 1 5 4 1 0 35 6 7 124 0 1 54 1 0 7 0 3 134 0 1 7 chain 152381 chr11 135006516 + 74536460 74540397 L1PA11 4918 + 2432 4517 24295 114 0 1 9 5 7 253 1860 29 196 2 0 401 0 4 6 3 2 14 0 1 225 34 18 72 2 1 37 0 4 81 0 4 101 4 0 87 1 0 61 0 1 89 1 0 79 8 4 24 0 2 36 1 0 5 26 24 51 2 0 13 1 0 20 4 0 9 chain 2704 chr11 135006516 + 74562770 74562817 MIRb 242 + 68 116 230191 18 7 8 22 chain 100572 chr11 135006516 + 74582536 74584332 HUERS-P3-int 2218 + 628 2193 36611 100 0 15 8 22 13 31 95 0 300 1 0 33 1 0 80 3 0 117 9 10 185 0 1 330 50 55 112 161 98 25 114 33 19 chain 552012 chr11 135006516 + 74588508 74594577 L1PA2 6032 - 2 6026 1190 2885 0 4 950 1 0 350 44 0 454 1 0 11 1 0 640 1 0 479 1 0 251 chain 7244 chr11 135006516 + 74594853 74594939 LTR9 672 + 0 86 175801 86 chain 18535 chr11 135006516 + 74595793 74596022 L1PREC2 3366 + 1039 1268 131411 229 chain 539561 chr11 135006516 + 74598482 74604600 L1PA4 6152 + 1 6143 2892 949 0 4 394 4 13 90 0 4 87 0 1 421 0 1 419 0 3 790 1 0 2788 0 1 35 1 3 139 chain 150069 chr11 135006516 + 74611251 74613613 L1MA2 4263 + 1975 4058 24601 94 310 4 353 0 3 81 0 1 66 13 0 9 2 16 42 1 0 35 0 5 185 0 1 358 28 52 91 9 6 87 0 5 115 6 2 61 0 1 13 4 3 142 3 0 150 11 9 93 chain 27916 chr11 135006516 + 74635238 74635536 AluYg6 310 + 0 298 93302 298 chain 18469 chr11 135006516 + 74657318 74657684 THE1D 372 + 4 372 131584 52 36 27 12 9 11 59 4 8 15 52 57 127 chain 8078 chr11 135006516 + 74676336 74676422 L1PA4 6152 + 6065 6151 170598 86 chain 7278 chr11 135006516 + 74679239 74679337 U6 107 - 6 107 175597 51 1 4 46 chain 9840 chr11 135006516 + 74683986 74684094 L1PA2 6032 + 5742 5850 161392 108 chain 29455 chr11 135006516 + 74729317 74729753 MLT2A1 477 + 0 477 86821 18 1 3 147 5 2 163 11 12 26 27 68 38 chain 124129 chr11 135006516 + 74729753 74731412 THE1B-int 1605 + 0 1598 29655 432 0 25 381 104 1 537 1 18 204 chain 8715 chr11 135006516 + 74748496 74748597 LTR13 1007 + 0 101 166193 101 chain 18483 chr11 135006516 + 74748597 74748801 LTR13 1007 - 803 1007 131549 204 chain 9971 chr11 135006516 + 74748819 74748942 L1MB8 1703 - 126 249 160717 123 chain 28528 chr11 135006516 + 74750968 74751334 LTR2 463 + 0 373 91056 101 12 13 107 0 5 142 0 1 4 chain 246654 chr11 135006516 + 74753347 74757724 Harlequin-int 5206 + 134 5197 16417 146 5 9 17 2 5 165 1 0 202 1 0 425 1 0 5 6 7 324 0 3 115 2 3 376 2 0 325 1343 2025 139 3 0 772 chain 32520 chr11 135006516 + 74757734 74758192 LTR2 463 + 0 463 79991 61 0 3 44 7 8 244 26 28 19 1 0 56 chain 154814 chr11 135006516 + 74758192 74760988 L1PBa 3878 - 1253 3234 23999 134 363 0 440 0 4 408 2 1 16 2 0 8 3 0 197 1 8 77 0 12 346 8 12 234 473 0 84 chain 79156 chr11 135006516 + 74771665 74772539 L1PA3long 6157 + 5278 6157 43978 6 0 4 693 0 1 175 chain 6203 chr11 135006516 + 74779084 74779224 L1MA8 2339 - 75 206 183557 7 1 0 10 0 2 8 9 8 34 7 1 34 9 6 21 chain 13011 chr11 135006516 + 74793346 74793499 L1PA5 6144 + 5983 6137 148199 11 0 1 142 chain 25089 chr11 135006516 + 74793521 74793845 L1PA16 3655 + 2516 2838 104359 104 1 0 49 6 5 164 chain 116649 chr11 135006516 + 74809069 74810547 LTR12C 1709 + 0 1709 32245 212 1 2 359 6 5 72 0 278 143 0 47 106 0 4 273 98 0 208 chain 22668 chr11 135006516 + 74815756 74816031 AluY 311 + 8 304 117225 231 0 21 44 chain 28204 chr11 135006516 + 74817143 74817603 L1PA15 4387 + 3922 4366 92295 11 1 0 171 1 0 75 5 7 23 4 0 7 2 1 50 6 3 44 3 1 11 11 6 24 1 0 10 chain 539898 chr11 135006516 + 74830342 74836508 L1PA4 6152 + 6 6152 2827 727 0 9 299 0 2 213 1 2 585 45 0 94 0 1 437 0 1 220 0 1 586 1 0 69 0 1 33 0 1 692 0 1 136 0 2 2016 1 7 11 chain 14573 chr11 135006516 + 74841307 74841468 L1PA3long 6157 + 5996 6157 142673 161 chain 9132 chr11 135006516 + 74847531 74847644 THE1B-int 1605 + 0 113 164901 113 chain 40670 chr11 135006516 + 74867624 74868141 MER41A 554 - 0 525 68338 79 1 6 149 0 2 225 7 8 56 chain 8025 chr11 135006516 + 74871816 74872032 L1MB7 1623 + 1068 1265 170901 23 1 0 16 5 6 70 85 66 16 chain 25446 chr11 135006516 + 74939107 74939381 AluYa5 310 + 35 310 102478 61 0 1 213 chain 4696 chr11 135006516 + 74945422 74945478 MLT1H2 457 - 4 60 198574 56 chain 17333 chr11 135006516 + 74970012 74970227 AluSz6 309 + 73 288 134701 215 chain 13959 chr11 135006516 + 75009135 75009293 L1PA6 6164 + 6003 6162 144709 7 0 1 151 chain 49724 chr11 135006516 + 75042357 75044204 MER4E1 777 + 12 765 59213 5 3 0 72 864 72 91 11 24 244 304 0 24 9 0 81 0 1 139 chain 29514 chr11 135006516 + 75042437 75042829 LTR7 482 + 0 474 86587 86 1 51 87 9 41 209 chain 35564 chr11 135006516 + 75077509 75078254 LTR3 431 - 0 427 75460 58 317 0 146 1 0 223 chain 55946 chr11 135006516 + 75089423 75090058 SVA_B 1603 - 0 734 55157 6 2 0 30 0 18 559 5 88 33 chain 21272 chr11 135006516 + 75103108 75103471 Tigger1 2417 + 2077 2417 122951 12 0 2 142 0 1 18 2 0 39 39 0 37 0 1 4 31 45 39 chain 152643 chr11 135006516 + 75120241 75121922 SVA_E 1901 - 12 1804 24272 667 0 1 126 1 0 87 5 4 42 1 2 6 0 74 63 6 4 114 0 40 514 1 0 48 chain 7154 chr11 135006516 + 75202549 75202633 MER5A1 166 - 82 166 176384 84 chain 22154 chr11 135006516 + 75228242 75228510 AluSp 311 + 25 293 119575 268 chain 5720 chr11 135006516 + 75246679 75246743 LTR12C 1709 + 1645 1709 187923 64 chain 2116 chr11 135006516 + 75248196 75248245 MIR3 191 - 61 110 237489 16 1 0 6 11 12 15 chain 4008 chr11 135006516 + 75258401 75258453 MER53 195 + 139 191 207265 52 chain 4460 chr11 135006516 + 75262518 75262585 MER96B 391 + 102 169 201242 4 1 0 50 1 2 11 chain 84074 chr11 135006516 + 75351600 75352530 L1PA4 6152 + 5212 6143 41871 796 0 1 134 chain 4800 chr11 135006516 + 75368527 75368590 MER20 218 + 113 178 197355 43 1 3 19 chain 25262 chr11 135006516 + 75383614 75383984 MSTA 426 - 0 426 103403 91 3 39 52 1 0 5 5 1 91 14 39 108 chain 9109 chr11 135006516 + 75388601 75388705 MER44A 345 + 104 208 165030 104 chain 295549 chr11 135006516 + 75394622 75398634 L1PA10 4194 - 33 4019 13669 11 1 0 33 3 0 809 0 1 47 0 1 4 0 9 73 5 6 33 18 10 159 0 2 7 7 6 270 0 4 19 1 0 8 0 1 24 4 8 743 1 4 324 7 6 58 0 4 34 12 5 41 9 12 228 0 2 32 0 2 637 2 0 88 0 1 11 33 21 10 1 0 7 13 11 20 28 21 8 1 0 14 3 1 16 47 39 10 2 0 7 3 0 12 2 0 12 chain 10649 chr11 135006516 + 75404312 75404446 L1PA16 3655 - 62 193 157610 16 3 0 115 chain 8687 chr11 135006516 + 75404457 75404561 L1P4 1494 - 322 426 167264 104 chain 41960 chr11 135006516 + 75419172 75419673 MER9a3 513 - 0 513 66674 218 0 1 182 6 16 77 0 1 18 chain 4084 chr11 135006516 + 75432226 75432290 MIRb 242 + 97 160 206146 42 6 5 16 chain 25094 chr11 135006516 + 75447482 75447771 AluSp 311 - 11 300 104327 289 chain 23662 chr11 135006516 + 75453196 75453492 7SLRNA 320 + 24 318 112242 275 2 0 19 chain 558436 chr11 135006516 + 75459661 75465694 L1PA2 6032 + 3 6032 459 4729 0 1 1143 3 0 143 2 0 13 chain 5382 chr11 135006516 + 75471887 75471976 MER5A 189 + 30 119 191173 46 9 10 4 1 0 29 chain 6822 chr11 135006516 + 75493301 75493431 MER5A1 166 - 30 161 178782 43 23 23 41 6 7 17 chain 2938 chr11 135006516 + 75508012 75508043 MIRb 242 - 111 142 226357 31 chain 44112 chr11 135006516 + 75544567 75545084 MER9a3 513 - 0 513 64071 66 3 1 61 2 1 308 1 0 76 chain 11061 chr11 135006516 + 75548400 75548542 MER2 342 - 64 207 155960 34 0 2 17 1 0 90 chain 6781 chr11 135006516 + 75548591 75548678 HY3 101 - 2 89 179093 87 chain 6930 chr11 135006516 + 75556439 75556581 L1PA15 4387 + 4221 4353 177958 35 17 14 46 20 13 24 chain 176976 chr11 135006516 + 75587893 75589957 SVA_D 2077 - 0 2077 21254 316 1 0 280 31 0 80 10 8 4 0 1 350 0 2 29 4 5 9 0 2 30 0 1 10 12 54 42 1 0 823 1 0 31 chain 2495 chr11 135006516 + 75588490 75588521 SVA_D 2077 - 948 997 132790 13 2 20 16 chain 10623 chr11 135006516 + 75621654 75621784 LTR8 732 - 15 145 157718 130 chain 515384 chr11 135006516 + 75684608 75691061 L1PA6 6164 - 4 6164 5629 234 0 2 247 0 1 84 0 1 192 1 2 19 324 0 327 1 0 140 0 13 2266 2 0 304 4 5 108 1 3 198 0 1 177 0 1 573 8 9 288 1 26 373 1 0 56 2 1 254 20 6 53 0 1 195 chain 29961 chr11 135006516 + 75685392 75685709 AluYb8 318 - 1 318 84931 317 chain 54558 chr11 135006516 + 75729781 75730581 L1M1 2793 - 1229 2021 55990 143 2 1 4 0 1 30 0 11 61 0 1 18 0 1 24 7 0 21 7 3 65 1 0 177 1 0 102 1 0 8 2 0 21 1 0 18 29 26 26 1 0 30 chain 6168 chr11 135006516 + 75749450 75749523 MER2 342 + 147 220 183814 73 chain 115332 chr11 135006516 + 75771434 75772867 LTR12C 1709 + 0 1709 32669 20 0 9 182 4 3 46 0 1 203 0 1 13 2 1 171 0 278 184 1 0 4 4 2 106 11 4 296 1 2 35 1 0 58 7 6 84 chain 23258 chr11 135006516 + 75787267 75787632 THE1B 368 - 0 361 114400 128 46 50 21 1 0 6 8 0 101 0 1 54 chain 257518 chr11 135006516 + 75802881 75805806 L1PA5 6144 - 1 2904 15845 141 0 1 12 1 0 89 3 0 605 0 3 510 22 0 859 0 1 464 1 0 218 chain 60878 chr11 135006516 + 75812824 75813854 L1PREC2 3366 - 371 1375 52398 24 22 8 11 4 1 29 3 1 15 130 113 41 2 0 85 1 0 74 9 13 12 0 1 146 0 7 89 1 2 176 13 13 143 chain 8962 chr11 135006516 + 75856069 75856187 MSTB 430 + 1 120 165813 46 1 0 7 0 1 48 0 1 16 chain 3550 chr11 135006516 + 75886781 75886823 MER5A 189 - 74 116 214539 42 chain 4265 chr11 135006516 + 75887594 75887645 MER5A 189 - 74 125 203689 51 chain 6421 chr11 135006516 + 75931803 75931896 L1PA15 4387 + 3754 3845 181855 55 10 8 28 chain 6948 chr11 135006516 + 75946556 75946628 tRNA-Pro-CCY 72 + 0 72 177842 72 chain 6498 chr11 135006516 + 75946868 75946940 tRNA-Pro-CCA 73 - 1 73 181272 72 chain 8347 chr11 135006516 + 75961157 75961271 MER52A 1651 - 376 480 169140 34 10 0 70 chain 5363 chr11 135006516 + 76004288 76004691 Arthur1B 1073 + 44 488 191409 16 5 0 19 1 0 6 1 0 4 301 349 50 chain 4281 chr11 135006516 + 76006287 76006337 Arthur1B 1073 - 585 635 203473 50 chain 24036 chr11 135006516 + 76009879 76010163 AluSp 311 - 13 297 110130 284 chain 3979 chr11 135006516 + 76067655 76067738 MER2 342 + 94 182 207694 24 26 31 33 chain 3645 chr11 135006516 + 76089494 76089578 L1MB5 1630 - 1063 1149 212880 29 29 31 26 chain 25826 chr11 135006516 + 76101597 76101886 AluYc 301 + 0 287 100764 111 2 0 176 chain 7331 chr11 135006516 + 76104799 76104930 L1MA3 4352 - 24 150 175216 13 10 9 18 1 0 6 5 4 20 2 0 56 chain 3822 chr11 135006516 + 76157409 76157452 U6 107 - 64 107 210045 43 chain 29315 chr11 135006516 + 76174386 76174696 AluYb8 318 + 1 311 87465 310 chain 349036 chr11 135006516 + 76191663 76196427 L1P3 4156 + 0 4139 11636 228 15 0 14 5 19 61 1 0 74 325 0 8 3 0 248 1 0 873 0 1 230 1 0 506 1 0 305 0 1 61 0 1 71 0 4 591 2 1 403 298 0 132 0 1 168 1 3 103 2 0 5 2 1 26 chain 53522 chr11 135006516 + 76196798 76197451 L1PA7 6471 + 5819 6466 56664 6 6 0 641 chain 10823 chr11 135006516 + 76211960 76212160 MER2 342 - 2 210 156897 40 40 42 17 4 6 79 0 4 20 chain 29667 chr11 135006516 + 76223288 76223695 MER75 514 + 0 514 85969 236 2 4 37 0 106 85 21 20 26 chain 4781 chr11 135006516 + 76241564 76241634 MADE1 96 + 0 96 197562 17 3 28 24 0 1 26 chain 175525 chr11 135006516 + 76275824 76277830 L1PA6 6164 + 4149 6162 21392 216 0 4 310 1 0 168 0 5 443 0 1 858 2 0 8 chain 126625 chr11 135006516 + 76292966 76294400 SVA_C 1631 - 17 1630 28913 633 1 175 63 0 5 241 0 1 317 1 0 149 1 0 9 0 1 19 chain 121290 chr11 135006516 + 76304429 76306341 L1PA11 4918 + 2896 4508 30606 148 4 5 67 3 48 34 0 1 321 351 4 760 0 1 9 16 20 11 1 0 68 2 1 13 2 0 68 2 0 13 0 1 19 chain 143049 chr11 135006516 + 76318969 76320638 LTR12C 1709 - 0 1709 25645 481 0 4 6 1 0 101 2 0 6 1 0 234 0 40 837 chain 50580 chr11 135006516 + 76330344 76330900 SVA_D 2077 + 1519 2077 58598 177 0 2 379 chain 18817 chr11 135006516 + 76394280 76394645 THE1D 372 + 2 360 130626 11 0 2 37 6 3 56 15 16 26 78 71 7 0 1 108 1 0 20 chain 84966 chr11 135006516 + 76422129 76423154 LTR5A 1029 + 0 1027 41526 147 1 0 176 25 0 8 0 25 122 0 2 481 0 1 65 chain 5006 chr11 135006516 + 76438721 76438812 MADE1 96 - 0 96 195062 36 19 24 36 chain 17925 chr11 135006516 + 76444844 76445074 L1PA4 6152 - 0 223 133044 161 19 12 50 chain 116691 chr11 135006516 + 76501841 76503535 THE1A-int 1579 + 0 1579 32227 25 1 0 144 18 18 101 0 1 204 7 2 46 10 14 101 2 1 111 3 4 26 122 1 191 1 9 225 16 14 32 4 1 167 0 5 119 1 0 17 chain 25740 chr11 135006516 + 76503535 76503897 THE1A 353 + 0 353 101118 250 13 12 37 13 5 49 chain 23500 chr11 135006516 + 76521775 76522117 MER51B 395 - 11 395 113131 49 0 4 11 2 0 50 2 0 103 0 56 72 14 0 39 chain 78073 chr11 135006516 + 76526429 76527450 MER11A 1151 - 0 1151 44480 59 8 7 61 0 1 164 6 40 13 1 0 184 0 1 149 1 0 31 0 1 51 0 1 88 12 8 138 0 99 55 chain 19139 chr11 135006516 + 76530894 76531225 MER51B 395 - 0 395 129715 120 17 25 5 1 0 35 10 11 54 12 68 38 14 0 14 0 14 11 chain 103733 chr11 135006516 + 76531873 76533070 SVA_D 2077 + 62 1740 35788 34 8 0 446 0 40 306 2 398 28 0 1 30 0 2 4 0 1 21 1 50 317 chain 244686 chr11 135006516 + 76537456 76540186 L1PA3long 6157 - 2 2744 16520 841 0 4 1085 0 8 804 chain 8074 chr11 135006516 + 76540186 76540281 L1P1 4361 - 4262 4357 170175 95 chain 10321 chr11 135006516 + 76544208 76544354 MSTB 430 + 253 407 159024 47 12 20 87 chain 4704 chr11 135006516 + 76589375 76589432 Charlie1b 519 - 14 71 198485 57 chain 11941 chr11 135006516 + 76596340 76596498 L1PA8 5853 - 0 156 152441 93 1 0 19 2 1 43 chain 24813 chr11 135006516 + 76611214 76611581 Tigger2 2703 - 223 606 105823 72 3 4 17 0 9 21 0 3 83 10 11 56 12 13 63 0 1 30 chain 38020 chr11 135006516 + 76612552 76613014 LTR2 463 - 0 463 72097 88 12 13 362 chain 166170 chr11 135006516 + 76619374 76621318 L1PA7 6471 + 4537 6461 22496 11 0 1 77 0 4 293 22 0 32 1 0 249 1 0 418 0 2 669 3 0 168 chain 46244 chr11 135006516 + 76624095 76624602 L1PA5 6144 - 1682 2189 61739 507 chain 143036 chr11 135006516 + 76624602 76626230 L1PA5 6144 + 4490 6132 25646 198 0 2 414 0 1 192 0 4 222 1 0 282 1 0 184 0 9 134 chain 399556 chr11 135006516 + 76638503 76642997 L1PA5 6144 - 2 4490 10112 7 4 0 331 1 0 700 0 1 1137 7 0 480 0 4 505 0 1 1322 chain 125389 chr11 135006516 + 76644327 76645786 SVA_D 2077 - 0 2077 29281 518 0 661 305 40 0 408 1 4 150 1 0 11 0 2 5 9 2 11 chain 11774 chr11 135006516 + 76647059 76647228 THE1B 368 - 0 172 153160 46 8 16 40 5 0 70 chain 2831 chr11 135006516 + 76657054 76657103 L1M2a1 1281 - 613 659 228206 23 6 3 20 chain 24935 chr11 135006516 + 76664988 76665280 AluSp 311 - 9 301 105136 292 chain 546580 chr11 135006516 + 76674880 76680999 L1PA4 6152 + 8 6151 1872 123 14 0 11 5 20 868 0 1 31 0 2 418 0 2 1284 0 2 901 0 17 1690 1 0 773 chain 7576 chr11 135006516 + 76730514 76730609 Tigger1 2417 + 1170 1264 173696 31 1 0 63 chain 31191 chr11 135006516 + 76759002 76759375 L1PA6 6164 - 2 373 82174 8 1 0 7 1 0 356 chain 18587 chr11 135006516 + 76768755 76769027 LTR8 732 - 453 732 131264 74 0 1 58 4 9 16 11 14 80 2 0 27 chain 167593 chr11 135006516 + 76808518 76810754 SVA_F 1814 - 0 1804 22325 10 0 6 650 227 0 185 0 15 33 226 0 905 chain 9042 chr11 135006516 + 76809178 76809402 SVA_F 1814 - 715 953 79050 88 1 0 17 1 0 31 0 15 67 0 1 19 chain 2706 chr11 135006516 + 76809623 76809668 SVA_F 1814 - 708 753 131608 45 chain 1655 chr11 135006516 + 76809668 76809709 SVA_F 1814 - 1153 1194 79050 41 chain 6495 chr11 135006516 + 76809709 76809817 SVA_F 1814 - 794 852 131608 46 50 0 12 chain 2516 chr11 135006516 + 76809771 76809805 SVA_F 1814 - 679 713 215691 34 chain 10752 chr11 135006516 + 76846812 76846953 L1MB3 1562 - 648 789 157192 141 chain 3578 chr11 135006516 + 76904296 76904348 HAL1-2a_MD 234 - 179 225 214010 26 6 0 20 chain 3576 chr11 135006516 + 76918830 76918870 MIRb 242 - 134 174 214028 40 chain 485469 chr11 135006516 + 76929440 76935372 L1PA6 6164 - 3 6164 7541 452 1 0 390 0 9 142 0 5 323 1 0 154 0 239 75 0 4 97 71 0 224 0 3 591 56 2 19 0 6 47 7 8 65 1 0 30 0 12 29 0 4 28 0 4 12 1 0 65 0 4 678 0 3 36 0 4 69 0 3 111 0 2 288 4 0 62 5 0 411 0 11 182 0 5 174 2 32 76 2 1 12 1 7 41 4 0 29 3 0 57 0 17 297 1 2 106 20 21 58 0 1 322 chain 15262 chr11 135006516 + 76937292 76937687 MLT1B 390 + 0 379 140595 28 5 0 29 0 10 23 10 11 9 1 0 5 10 11 5 1 0 43 127 106 99 chain 10531 chr11 135006516 + 76946076 76946238 L1PA17 2846 - 153 310 158128 44 1 0 17 1 0 28 15 12 56 chain 16689 chr11 135006516 + 76947251 76947444 L1PA5 6144 - 21 214 136438 193 chain 12091 chr11 135006516 + 76961350 76961504 L1PA16 3655 - 120 274 151834 154 chain 33581 chr11 135006516 + 76973432 76973901 LTR26B 539 + 0 478 78273 95 18 25 323 17 19 16 chain 50246 chr11 135006516 + 76988647 76989199 L1P1 4361 - 1071 1636 58829 102 0 13 450 chain 6500 chr11 135006516 + 77002002 77002110 L1MA4A 3247 + 3022 3128 181241 22 10 8 43 0 1 11 1 0 21 chain 35510 chr11 135006516 + 77009558 77010106 MER4E1 777 - 262 777 75541 21 0 1 59 0 1 85 0 19 75 10 8 9 3 2 9 0 1 51 0 3 59 54 0 95 1 0 17 chain 36193 chr11 135006516 + 77011046 77011498 LTR10F 562 + 0 550 74637 81 0 5 48 15 15 35 0 93 273 chain 458959 chr11 135006516 + 77037749 77042841 L1PA4 6152 + 1053 6151 8444 108 0 3 1788 0 2 746 0 1 1682 0 1 750 1 0 17 chain 4403 chr11 135006516 + 77050838 77050916 MADE1 96 - 1 87 201892 29 17 25 32 chain 2903 chr11 135006516 + 77058943 77058976 MIRc 230 - 121 154 226990 33 chain 5900 chr11 135006516 + 77128016 77128093 Tigger3b 1229 - 1016 1093 186193 6 2 0 60 0 2 9 chain 21219 chr11 135006516 + 77149182 77149478 MSTA 426 - 127 419 123148 52 2 1 38 8 6 176 4 3 16 chain 10371 chr11 135006516 + 77172302 77172501 MLT2C1 407 + 10 209 158827 103 57 0 11 0 57 28 chain 17367 chr11 135006516 + 77188251 77188486 MER6A 605 - 0 240 134607 35 0 8 46 4 0 52 1 2 97 chain 23462 chr11 135006516 + 77195838 77196193 THE1B 368 - 0 368 113307 66 0 2 98 4 0 30 12 11 93 9 24 19 5 6 19 chain 153336 chr11 135006516 + 77200455 77202189 SVA_D 2077 + 0 2077 24180 5 1 0 11 1 0 6 1 0 6 1 0 625 0 37 189 1 0 38 3 138 175 0 176 38 0 1 625 1 0 7 chain 28508 chr11 135006516 + 77202602 77203021 L1M1 2793 + 2072 2504 91152 34 0 3 40 0 1 12 6 9 29 0 5 72 7 15 12 8 0 107 0 1 5 1 0 30 0 1 56 chain 20245 chr11 135006516 + 77203724 77204114 MSTA 426 + 26 426 126392 74 62 70 36 9 13 17 8 6 51 18 18 115 chain 61640 chr11 135006516 + 77232606 77233518 MER61-int 3695 - 1087 2017 52060 103 3 0 7 0 3 40 0 1 47 0 6 207 7 15 23 0 2 12 4 5 172 1 2 33 22 20 16 23 26 69 29 29 35 2 0 57 chain 38531 chr11 135006516 + 77233520 77234171 L1PA16 3655 + 2996 3619 71396 105 0 3 34 2 0 62 43 42 48 2 0 151 4 0 6 0 4 35 10 11 80 3 0 10 42 18 14 chain 3042 chr11 135006516 + 77243869 77243903 HY3 101 - 2 36 224152 34 chain 19842 chr11 135006516 + 77255440 77255710 AluSp 311 + 0 297 127673 69 6 10 57 6 29 132 chain 25384 chr11 135006516 + 77257674 77257961 AluSg 306 + 11 298 102761 287 chain 9416 chr11 135006516 + 77276028 77276147 L1MA3 4352 - 3054 3176 163478 87 0 3 32 chain 39269 chr11 135006516 + 77281966 77282500 LTR61 567 + 1 567 70372 24 0 1 29 0 11 120 1 0 8 0 1 29 4 0 142 0 25 120 1 0 4 16 16 36 chain 39858 chr11 135006516 + 77286504 77287042 LTR61 567 + 0 565 69522 25 0 1 25 5 15 159 8 0 141 0 25 110 6 5 10 0 1 14 1 0 34 chain 29013 chr11 135006516 + 77287292 77287670 MER4A1 472 + 27 428 88929 91 0 2 110 5 26 172 chain 23626 chr11 135006516 + 77290636 77290914 AluSp 311 - 13 291 112431 278 chain 175329 chr11 135006516 + 77292389 77296198 MER4-int 2692 + 1 2692 21415 10 1 0 25 2 0 63 1 0 25 7 10 11 0 292 92 7 20 100 592 0 73 1 0 169 6 0 28 0 1 133 0 5 15 37 0 177 1 0 64 5 0 15 2 0 94 0 1 28 0 1 197 1 0 102 0 1 29 0 11 97 0 2 54 317 0 6 1 0 137 0 5 109 7 6 22 5 4 34 1 4 46 492 0 173 0 3 17 1 3 177 chain 14812 chr11 135006516 + 77310319 77310488 L1PA6 6164 - 2 171 141903 169 chain 24549 chr11 135006516 + 77328693 77328991 AluSc 308 + 11 308 107258 244 1 0 53 chain 7328 chr11 135006516 + 77350442 77350532 LTR8 732 - 0 90 175242 90 chain 26138 chr11 135006516 + 77350542 77350838 AluSp 311 + 12 309 99446 28 0 1 268 chain 32159 chr11 135006516 + 77351831 77352265 MER57A1 433 + 0 433 80598 261 24 23 149 chain 3514 chr11 135006516 + 77363845 77363889 L1MB7 1623 + 66 110 215154 44 chain 21586 chr11 135006516 + 77364976 77365225 AluSp 311 + 28 277 121824 249 chain 30680 chr11 135006516 + 77367314 77367893 MER51A 677 + 0 661 83071 49 19 20 15 1 0 11 1 0 30 3 0 16 1 0 11 27 29 11 19 0 38 46 157 145 10 11 40 8 0 78 chain 9525 chr11 135006516 + 77380566 77380689 MER3 215 - 22 150 162954 20 0 5 103 chain 7702 chr11 135006516 + 77402694 77402794 HY3 101 + 0 100 172921 100 chain 29401 chr11 135006516 + 77403278 77403588 AluYa5 310 - 0 310 87069 310 chain 3096 chr11 135006516 + 77408815 77408876 L1MA3 4352 - 58 116 222997 7 1 0 5 1 0 12 1 2 8 2 0 24 chain 5656 chr11 135006516 + 77479596 77479663 MER33 330 - 246 313 188507 67 chain 26616 chr11 135006516 + 77503040 77503392 THE1B 368 - 0 367 97612 166 0 2 28 8 6 107 0 15 43 chain 24338 chr11 135006516 + 77506857 77507159 L1PA7 6471 - 2595 2906 107970 115 0 1 12 1 9 174 chain 206506 chr11 135006516 + 77507159 77510020 L1PA7 6471 + 3911 6470 18753 390 1 0 16 0 3 635 1 0 134 1 0 532 0 3 68 5 8 136 1 0 124 1 0 79 0 1 57 328 0 165 0 2 111 0 19 76 chain 28750 chr11 135006516 + 77519573 77519878 AluYa5 310 - 5 310 90122 305 chain 29744 chr11 135006516 + 77541297 77541757 LTR3A 482 + 27 482 85683 79 3 4 5 0 1 28 0 1 75 61 52 76 0 1 59 1 0 13 1 2 59 chain 22352 chr11 135006516 + 77554798 77555148 THE1B 368 - 3 361 118694 46 5 13 112 0 2 17 4 3 91 43 42 32 chain 8748 chr11 135006516 + 77563537 77563647 MSTA 426 - 316 426 166926 110 chain 4804 chr11 135006516 + 77564649 77564710 MSTA-int 1630 - 0 61 197319 61 chain 10463 chr11 135006516 + 77568639 77569088 L1PA8 5853 - 0 140 158421 93 308 0 19 2 1 27 chain 25734 chr11 135006516 + 77569372 77569669 LTR17 781 - 455 781 101146 91 0 29 206 chain 349066 chr11 135006516 + 77569983 77573999 HERV17-int 4347 - 0 4067 11634 78 0 4 617 1 5 11 1 0 4 0 1 293 0 5 200 2 5 107 0 1 118 0 1 959 2 0 469 0 1 86 0 22 6 0 1 351 0 4 93 0 2 306 0 1 92 0 4 220 chain 39402 chr11 135006516 + 77574029 77574517 LTR17 781 - 0 517 70160 32 5 27 223 4 0 29 0 9 116 1 0 18 0 1 17 0 2 43 chain 23844 chr11 135006516 + 77589131 77589423 AluSc8 310 + 5 300 111226 127 0 3 165 chain 246145 chr11 135006516 + 77597831 77600602 L1PA3long 6157 + 2830 6157 16436 371 4 531 214 0 1 440 1 0 1443 5 34 293 chain 6446 chr11 135006516 + 77619278 77619348 L1PA7 6471 - 3 73 181663 70 chain 70433 chr11 135006516 + 77620856 77621640 L1PA4 6152 + 5358 6143 48195 643 0 1 141 chain 123498 chr11 135006516 + 77642669 77644159 L1PA7 6471 + 4993 6464 29880 445 2 3 172 31 13 411 0 2 237 14 11 161 2 1 15 chain 100289 chr11 135006516 + 77644263 77645453 SVA_B 1603 + 0 1603 36696 7 5 0 18 0 22 27 1 0 122 2 0 297 0 233 64 0 1 46 1 165 247 0 1 353 chain 20322 chr11 135006516 + 77657865 77658188 L1M2c 2366 + 1622 1931 126174 96 0 1 27 7 9 63 4 0 30 1 0 52 10 7 12 9 0 12 chain 97354 chr11 135006516 + 77660276 77661419 L1PA7 6471 + 5321 6469 37469 118 1 2 183 4 5 691 0 1 135 0 2 11 chain 49655 chr11 135006516 + 77661778 77662345 L1PA4 6152 - 9 575 59268 245 1 0 321 chain 75876 chr11 135006516 + 77662345 77688124 L1PA4 6152 + 4776 6143 45561 793 24429 17 557 chain 2822 chr11 135006516 + 77694823 77694855 U2 167 + 0 32 228424 32 chain 68426 chr11 135006516 + 77697253 77698042 L1PA6 6164 + 5372 6161 49075 179 0 3 595 3 0 12 chain 7473 chr11 135006516 + 77703485 77703571 AluJb 308 + 21 107 174321 86 chain 24661 chr11 135006516 + 77726069 77726410 THE1B 368 + 0 368 106666 44 0 15 113 1 0 29 29 42 125 chain 33020 chr11 135006516 + 77735667 77736592 MLT2A1 477 - 2 477 79185 34 486 42 14 4 0 181 0 1 33 4 1 169 chain 61951 chr11 135006516 + 77752365 77753110 LTR17 781 + 0 772 51922 299 10 0 28 0 1 67 1 18 255 0 19 85 chain 12136 chr11 135006516 + 77760072 77760234 MER50 708 - 10 177 151670 127 0 1 15 2 1 5 0 5 13 chain 23571 chr11 135006516 + 77764543 77764821 AluSp 311 - 16 303 112736 204 1 10 73 chain 23093 chr11 135006516 + 77775760 77776050 AluY 311 + 0 298 115173 20 5 12 100 0 1 165 chain 36218 chr11 135006516 + 77791881 77792334 LTR7C 471 + 0 460 74604 150 0 8 138 3 0 143 0 2 19 chain 42179 chr11 135006516 + 77795560 77796098 HERVH-int 3825 + 3158 3695 66428 266 12 18 6 6 0 113 7 6 128 chain 33203 chr11 135006516 + 77797608 77798069 LTR7C 471 + 0 462 78877 152 0 8 11 43 35 68 1 0 165 0 2 21 chain 23193 chr11 135006516 + 77847597 77847939 Tigger1 2417 - 1122 1566 114709 32 0 5 41 1 0 85 21 113 9 0 3 139 1 4 13 chain 41219 chr11 135006516 + 77886787 77887254 L1PA3long 6157 - 0 471 67624 14 0 6 247 7 5 199 chain 29237 chr11 135006516 + 77914927 77915235 AluYa5 310 - 2 310 87869 308 chain 50299 chr11 135006516 + 77946068 77946990 THE1A-int 1579 - 953 1579 58793 128 300 0 62 1 0 152 0 2 9 0 2 226 1 2 43 chain 26059 chr11 135006516 + 77982850 77983215 THE1B 368 + 0 368 99798 44 0 15 113 1 0 28 2 0 97 19 10 61 chain 117312 chr11 135006516 + 77983217 77984760 THE1B-int 1605 + 2 1586 32022 39 21 23 93 0 1 13 0 1 4 14 13 241 1 26 36 0 1 349 0 3 75 3 5 269 13 14 253 1 2 9 0 5 109 chain 60346 chr11 135006516 + 78004964 78005653 L1PA4 6152 - 0 691 52657 142 1 0 190 0 3 356 chain 54698 chr11 135006516 + 78005653 78006260 L1PA4 6152 + 4858 5469 55904 446 0 4 161 chain 97040 chr11 135006516 + 78012770 78014231 L1PB1 5432 + 3996 5423 37551 25 0 2 62 2 3 120 0 2 156 2 1 162 0 6 86 0 1 172 17 22 253 4 8 24 28 7 6 1 0 20 1 0 13 1 0 11 17 12 49 1 0 12 8 7 26 27 22 16 37 25 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 19 chain 2797 chr11 135006516 + 78023385 78023468 MIR 256 - 35 120 228767 31 37 39 15 chain 107653 chr11 135006516 + 78045600 78047607 L1MA2 4263 - 150 1796 34815 8 1 0 35 0 1 9 3 0 95 11 9 15 19 18 58 0 7 42 25 22 68 10 13 22 5 6 23 2 1 73 22 21 191 24 25 185 0 1 5 1 0 158 1 2 86 5 10 59 0 4 134 11 6 55 366 10 79 0 4 16 15 0 70 chain 90334 chr11 135006516 + 78068422 78069485 L1PA4 6152 + 5102 6136 39525 256 33 0 51 0 3 626 0 1 97 chain 12459 chr11 135006516 + 78112212 78112507 L1MB3 1562 - 15 283 150419 17 7 6 21 37 40 25 2 0 5 51 24 32 0 1 25 1 0 72 chain 22087 chr11 135006516 + 78122800 78123066 AluSc 308 + 5 270 119851 252 2 1 12 chain 25882 chr11 135006516 + 78151582 78151878 AluSq10 312 - 16 312 100521 296 chain 118649 chr11 135006516 + 78174997 78176513 LTR12C 1709 - 1 1709 31556 83 13 12 109 1 0 276 0 4 106 4 2 4 1 0 33 1 5 26 0 1 52 0 2 145 0 118 330 17 63 9 3 0 29 7 32 267 chain 35084 chr11 135006516 + 78182579 78182959 L1PA2 6032 - 0 380 76070 380 chain 256287 chr11 135006516 + 78193277 78196447 L1PA8 5853 + 2677 5853 15917 204 2 1 47 7 12 66 0 1 212 0 1 106 1 3 419 0 1 465 3 1 107 0 2 546 0 1 138 2 0 47 0 6 204 4 5 41 0 1 61 2 0 19 0 2 60 18 1 14 7 20 24 0 1 48 1 0 44 2 0 70 12 10 52 2 1 19 1 0 93 chain 3831 chr11 135006516 + 78217016 78217076 L1ME1 1623 + 944 1002 209901 40 0 3 9 5 0 6 chain 5168 chr11 135006516 + 78236103 78236259 L1MC1 2226 + 1980 2123 193362 14 2 0 51 70 59 19 chain 30878 chr11 135006516 + 78263521 78263950 MER4A1 472 + 0 452 82721 21 0 1 50 0 1 8 0 1 90 2 1 58 22 43 178 chain 47191 chr11 135006516 + 78264767 78265545 L1PA14 3548 - 106 852 61053 28 1 0 16 1 0 5 1 0 15 4 2 14 0 2 13 7 15 58 2 0 53 1 0 84 1 0 5 27 21 76 6 7 17 15 18 39 57 25 192 0 1 40 chain 19036 chr11 135006516 + 78291960 78292259 THE1B 368 - 57 368 130011 5 0 3 63 8 16 10 1 5 7 0 1 9 2 0 23 1 0 99 18 17 53 chain 24742 chr11 135006516 + 78299004 78299291 AluY 311 + 3 291 106211 129 0 1 158 chain 511612 chr11 135006516 + 78308483 78314672 L1PA7 6471 - 1 6204 6013 11 2 0 88 0 1 50 2 0 10 2 3 194 0 1 299 1 3 176 0 2 5 0 7 74 1 3 594 3 2 116 2 1 153 0 8 225 15 0 30 0 2 259 2 0 144 2 0 157 41 16 219 3 5 35 1 6 328 4 0 6 0 4 6 7 8 329 0 4 80 0 1 13 0 1 158 0 1 88 4 9 442 0 1 356 6 11 368 0 1 164 0 10 666 0 1 86 17 18 39 1 0 105 chain 32767 chr11 135006516 + 78329528 78329972 MLT2A1 477 + 0 477 79581 168 5 2 9 0 1 19 0 1 185 4 0 10 7 45 37 chain 468680 chr11 135006516 + 78329972 78335594 HERVL-int 5654 + 0 5654 8082 655 1 0 16 0 1 4 5 4 106 1 3 53 0 2 21 0 5 57 0 5 327 0 1 464 0 2 96 0 1 479 0 1 349 0 1 258 0 6 99 0 2 192 2 0 736 6 10 315 1 2 825 1 3 553 chain 32069 chr11 135006516 + 78335594 78336030 MLT2A1 477 + 0 469 80738 169 5 2 8 0 1 24 0 1 180 19 53 31 chain 28300 chr11 135006516 + 78340787 78341093 AluYb8 318 - 12 318 91949 306 chain 3354 chr11 135006516 + 78350372 78350415 LTR12C 1709 + 934 977 158813 43 chain 23992 chr11 135006516 + 78350415 78350754 LTR12C 1709 + 858 1203 110374 205 41 0 8 0 47 85 chain 1338 chr11 135006516 + 78350631 78350661 LTR12C 1709 + 714 744 148495 30 chain 2426 chr11 135006516 + 78354646 78354689 L1MEf 1413 - 929 970 233990 20 7 5 16 chain 3656 chr11 135006516 + 78383550 78383610 MIRb 242 + 110 169 212642 32 8 7 20 chain 568501 chr11 135006516 + 78388817 78394847 L1HS 6032 - 0 6030 11 6030 chain 19318 chr11 135006516 + 78548143 78548511 THE1B 368 + 0 368 129185 105 9 11 60 44 42 10 11 12 66 24 23 39 chain 17532 chr11 135006516 + 78575319 78575507 AluYa5 310 + 122 310 134179 188 chain 3957 chr11 135006516 + 78590057 78590110 SVA_F 1814 + 436 569 208024 35 0 80 18 chain 78334 chr11 135006516 + 78590570 78591515 SVA_A 1864 + 403 1864 44359 47 0 452 84 3 0 74 3 0 71 1 71 662 chain 21379 chr11 135006516 + 78643684 78644006 MER1B 344 - 5 339 122590 58 22 24 163 10 19 57 1 2 11 chain 29494 chr11 135006516 + 78646042 78646355 AluYb8 318 - 5 318 86654 313 chain 10156 chr11 135006516 + 78653052 78653171 MER30 238 - 0 118 159819 24 1 0 94 chain 23032 chr11 135006516 + 78675081 78675376 AluSc 308 - 8 299 115483 21 9 5 265 chain 62900 chr11 135006516 + 78688650 78689392 L1PA7 6471 + 5711 6454 51489 515 0 1 227 chain 2846 chr11 135006516 + 78695795 78695960 MER3 215 + 47 210 227923 22 119 117 24 chain 24424 chr11 135006516 + 78721497 78721845 THE1B 368 - 1 368 107943 48 14 13 109 0 1 5 0 1 18 6 5 24 0 4 80 0 15 44 chain 11992 chr11 135006516 + 78750690 78750844 L1PA8 5853 + 5701 5853 152231 39 2 1 19 1 0 93 chain 3300 chr11 135006516 + 78775166 78775227 L1MA7 2200 - 95 149 218973 20 9 2 32 chain 7075 chr11 135006516 + 78784723 78784877 MIR 256 + 79 256 176912 55 0 21 35 49 51 15 chain 18550 chr11 135006516 + 78787343 78787666 THE1B 368 - 10 368 131356 39 21 20 56 34 42 29 7 6 83 0 14 10 0 15 44 chain 25259 chr11 135006516 + 78796135 78796433 AluY 311 + 0 294 103422 126 4 0 168 chain 13400 chr11 135006516 + 78822006 78822304 THE1B 368 + 0 306 146719 108 90 87 5 1 0 13 1 5 10 6 14 64 chain 29168 chr11 135006516 + 78835247 78835622 MLT2A1 477 + 0 378 88214 163 6 7 11 0 1 20 0 1 175 chain 445075 chr11 135006516 + 78836019 78848967 HERVL-int 5654 + 0 5654 8900 51 7 8 532 2 1 56 0 1 67 2 0 154 0 5 163 0 2 293 0 1 381 2 0 61 0 1 18 1 0 292 1 0 4 1 2 183 1 2 627 0 1 171 1 4 39 0 12 468 4 0 114 13 11 59 6 3 47 0 1 80 7330 0 22 0 1 249 2 7 563 0 6 114 18 21 266 0 1 60 7 13 416 chain 353248 chr11 135006516 + 78841889 78847202 L1PB1 5432 + 618 5404 11520 304 7 6 53 6 9 405 1 0 7 2 0 5 18 14 124 0 4 14 14 17 133 0 2 92 0 3 28 311 0 338 6 5 179 3 2 132 6 0 33 4 5 304 8 6 140 1 2 119 3 1 10 0 1 85 0 6 522 4 7 466 1 3 93 0 1 319 5 6 9 4 0 180 34 29 262 0 3 10 242 45 6 2 0 53 2 1 12 7 6 42 1 0 14 3 0 8 15 6 18 8 5 14 2 0 24 1 0 22 1 0 12 chain 30754 chr11 135006516 + 78848967 78849353 MLT2A1 477 + 0 385 82948 169 4 1 11 0 1 21 0 1 181 chain 65506 chr11 135006516 + 78853958 78854723 L1PA5 6144 + 5372 6135 50337 5 1 0 641 6 5 112 chain 13109 chr11 135006516 + 78874466 78874730 L1PB1 5432 - 10 260 147813 4 1 0 15 1 0 12 1 0 11 3 11 23 2 0 6 17 14 18 16 6 6 2 0 16 1 0 59 2 1 48 chain 140842 chr11 135006516 + 78902178 78903805 SVA_D 2077 + 13 2074 26019 16 0 28 498 0 40 281 8 200 10 0 2 101 0 107 51 2 0 5 0 49 365 1 0 108 1 0 49 0 20 131 chain 27489 chr11 135006516 + 78904980 78905333 THE1A 353 + 0 353 94687 111 1 0 64 1 0 21 0 2 155 chain 125745 chr11 135006516 + 78905355 78906907 THE1A-int 1579 + 22 1579 29175 215 3 4 230 0 4 365 0 1 183 4 1 257 0 2 295 chain 23651 chr11 135006516 + 78917549 78917886 THE1A 353 + 0 353 112305 109 2 1 21 0 6 139 0 9 13 18 20 35 chain 27619 chr11 135006516 + 79009304 79009596 AluYb8 318 + 26 318 94298 292 chain 30040 chr11 135006516 + 79058807 79059123 AluYb9 318 - 2 318 84687 316 chain 21797 chr11 135006516 + 79135709 79135972 AluY 311 + 13 277 121030 119 0 1 144 chain 33975 chr11 135006516 + 79160019 79160441 MER57A1 433 + 0 433 77654 69 0 1 163 0 1 174 0 9 16 chain 6691 chr11 135006516 + 79162999 79163110 MER20 218 - 88 196 179754 43 13 12 41 2 0 12 chain 7292 chr11 135006516 + 79167116 79167247 MER5A1 166 - 30 161 175500 21 17 16 21 4 5 68 chain 136840 chr11 135006516 + 79210290 79211876 SVA_B 1603 + 0 1603 26672 9 0 1 4 0 8 10 9 11 30 0 1 824 0 1 50 0 1 64 1 0 89 0 1 148 1 4 347 chain 34527 chr11 135006516 + 79217771 79218235 LTR21A 479 + 0 479 76868 35 13 21 5 1 0 4 0 1 171 0 2 16 1 4 164 1 3 53 chain 18309 chr11 135006516 + 79228584 79228904 THE1B 368 - 40 368 132053 84 48 53 22 1 0 102 14 20 33 2 0 14 chain 543823 chr11 135006516 + 79263698 79269721 L1PA3long 6157 + 0 6157 2234 151 1 2 618 5 133 803 0 1 1543 6 9 2323 0 1 573 chain 4414 chr11 135006516 + 79282883 79282944 MIR 256 - 127 188 201743 6 0 1 4 1 0 50 chain 412160 chr11 135006516 + 79297139 79302173 L1P2 5180 + 2 5008 9742 61 19 13 66 9 8 48 8 7 42 3 2 7 0 1 25 0 2 24 28 7 9 0 21 106 13 16 48 1 0 272 1 0 6 1 0 74 0 1 111 0 1 251 0 1 799 1 0 288 14 0 937 0 4 901 0 2 13 0 1 46 1 9 60 0 1 32 1 0 239 26 1 443 chain 8569 chr11 135006516 + 79306520 79306765 AluJr4 308 - 51 164 167917 99 132 0 14 chain 45662 chr11 135006516 + 79317368 79317978 L1PA8 5853 - 0 610 62342 93 1 0 19 2 1 24 0 5 18 1 0 6 13 12 50 0 1 16 2 0 46 1 0 213 0 1 105 chain 23216 chr11 135006516 + 79341198 79341486 AluY 311 + 4 299 114613 128 0 1 134 0 6 26 chain 20039 chr11 135006516 + 79393925 79394277 THE1D 372 + 0 372 127011 56 0 2 43 15 13 46 71 91 121 chain 25437 chr11 135006516 + 79435060 79435411 THE1A 353 + 0 353 102515 15 2 0 32 0 1 42 5 4 14 6 10 235 chain 5200 chr11 135006516 + 79436395 79436460 L1M1 2793 + 2559 2624 193015 65 chain 5191 chr11 135006516 + 79462551 79462611 L1MA4A 3247 - 1413 1473 193135 60 chain 177405 chr11 135006516 + 79500283 79502289 L1PA5 6144 - 16 2029 21195 237 0 1 212 0 4 40 2 0 336 0 5 410 1 0 768 chain 201825 chr11 135006516 + 79502289 79504590 L1PA5 6144 + 1794 4118 19082 503 0 3 863 1 2 350 0 6 268 0 13 316 chain 88696 chr11 135006516 + 79515085 79516118 SVA_B 1603 + 44 1597 40113 25 1 6 428 0 514 326 0 1 253 chain 11581 chr11 135006516 + 79516138 79516284 L1PB4 2604 + 2376 2522 153972 146 chain 11235 chr11 135006516 + 79539577 79539706 L1PA6 6164 - 10 139 155279 129 chain 23360 chr11 135006516 + 79551518 79551798 AluY 311 + 0 297 113869 57 1 17 58 0 1 164 chain 512110 chr11 135006516 + 79575456 79581888 L1PA7 6471 + 0 6461 5967 61 0 7 175 0 1 168 6 0 61 1 0 104 3 0 165 0 5 354 0 1 150 0 19 186 14 13 90 0 1 267 0 1 308 1 0 378 0 4 111 4 2 198 0 1 672 1 0 114 3 2 897 6 0 152 0 4 108 3 0 169 2 0 64 0 1 205 0 1 11 1 0 317 2 0 73 8 7 75 0 1 6 1 0 79 0 5 106 5 8 34 5 11 508 chain 11952 chr11 135006516 + 79584079 79584271 MER21C 908 - 9 200 152400 8 2 0 27 5 8 6 0 1 16 12 5 41 0 4 75 chain 80192 chr11 135006516 + 79587288 79588165 L1PA3long 6157 - 0 877 43511 877 chain 5300 chr11 135006516 + 79595995 79596075 MER20 218 + 0 80 192016 13 2 3 4 1 0 60 chain 10148 chr11 135006516 + 79605867 79606251 MSTD 398 - 0 398 159855 33 48 49 19 167 179 46 6 7 65 chain 3314 chr11 135006516 + 79611335 79611431 L1MA4 2864 - 725 820 218691 21 1 0 19 39 39 16 chain 23703 chr11 135006516 + 79612045 79612492 MER4D1 891 + 8 468 112018 32 1 2 10 13 14 23 39 35 67 5 7 73 0 4 19 26 36 84 2 1 15 1 0 24 0 1 13 chain 4235 chr11 135006516 + 79619185 79619234 MLT1G 592 + 232 281 204100 49 chain 49550 chr11 135006516 + 79623428 79624060 L1PA8A 6298 - 7 640 59357 98 9 10 128 1 2 223 2 0 34 1 0 25 4 6 107 chain 57259 chr11 135006516 + 79672005 79672656 L1P1 4361 - 350 1001 54363 651 chain 79765 chr11 135006516 + 79672660 79673542 L1PA3long 6157 + 5272 6157 43703 865 0 3 17 chain 36307 chr11 135006516 + 79709891 79710696 L1PA8 5853 + 5346 5853 74494 184 294 4 30 2 1 43 2 0 70 2 1 9 2 1 17 1 0 37 1 0 17 1 0 93 chain 64606 chr11 135006516 + 79712051 79712766 L1PA3long 6157 - 0 715 50743 715 chain 9428 chr11 135006516 + 79725544 79725657 L1PA8 5853 - 0 112 163420 93 1 0 19 chain 23064 chr11 135006516 + 79762063 79762338 AluSp 311 - 25 301 115331 161 0 1 114 chain 8231 chr11 135006516 + 79772766 79772872 L1PA7 6471 + 5510 5621 169769 84 0 5 22 chain 71543 chr11 135006516 + 79772874 79773711 L1PA7 6471 + 5621 6459 47677 698 3 4 136 chain 11223 chr11 135006516 + 79791139 79791414 MSTD 398 - 0 288 155333 70 8 9 33 80 75 9 3 0 41 9 29 22 chain 62829 chr11 135006516 + 79804377 79805107 L1PA5 6144 + 5412 6142 51524 577 0 7 10 7 0 136 chain 446635 chr11 135006516 + 79820794 79826555 L1PA8 5853 + 108 5852 8861 31 0 2 89 23 19 50 21 9 325 9 12 11 8 1 6 0 1 119 0 3 93 0 3 325 4 0 6 0 4 267 0 3 539 4 2 151 2 0 594 0 4 130 2 0 5 0 2 5 17 10 292 12 4 166 1 2 570 0 1 265 2 7 211 0 3 428 1 0 4 1 2 126 2 0 222 0 1 45 0 2 136 0 1 147 1 0 44 3 1 70 1 0 65 1 0 16 1 0 92 chain 52974 chr11 135006516 + 79850153 79850771 LTR12_ 688 + 0 673 57034 121 0 49 55 0 5 215 0 1 227 chain 6945 chr11 135006516 + 79857810 79857911 MER5A1 166 - 2 104 177864 80 3 4 18 chain 89230 chr11 135006516 + 79887318 79888661 L1PA13 3608 - 122 1449 39916 20 37 32 98 1 0 25 39 37 101 1 2 12 13 12 19 1 0 455 11 10 50 2 0 278 24 23 71 7 3 34 0 1 44 chain 29406 chr11 135006516 + 79901889 79902267 THE1C 375 + 0 374 87036 125 3 0 225 1 0 24 chain 33106 chr11 135006516 + 79908330 79908800 LTR3B_ 500 + 6 482 79045 139 16 17 138 1 2 40 7 9 45 8 10 76 chain 32108 chr11 135006516 + 79909331 79909759 LTR7B 505 - 2 505 80674 114 0 1 26 1 0 43 0 1 38 0 2 26 17 79 58 0 10 105 chain 15558 chr11 135006516 + 79917324 79917499 L1HS 6032 + 5856 6030 139705 162 1 0 12 chain 4309 chr11 135006516 + 79954077 79954130 MSTB 430 - 367 420 203104 53 chain 112606 chr11 135006516 + 79968423 79969862 LTR12C 1709 + 0 1709 33503 282 1 10 10 9 0 162 0 2 149 1 2 33 0 278 182 1 0 7 3 1 96 21 14 393 5 4 84 chain 54107 chr11 135006516 + 79978538 79979134 L1PA3long 6157 - 0 596 56291 596 chain 49126 chr11 135006516 + 79979139 79979680 L1PA3long 6157 + 4991 5532 59655 541 chain 29329 chr11 135006516 + 79983975 79984324 L1PA6 6164 - 2 351 87396 349 chain 52620 chr11 135006516 + 79984324 79984953 L1PA6 6164 + 5178 5807 57225 124 0 1 101 11 10 393 chain 53175 chr11 135006516 + 79989606 79990209 L1PA4 6152 + 5541 6143 56907 277 1 0 325 chain 25368 chr11 135006516 + 80013635 80013975 THE1B 368 + 0 353 102842 44 5 20 108 2 1 31 4 5 91 2 0 53 chain 19603 chr11 135006516 + 80018350 80018691 L1PA14 3548 + 3150 3485 128377 43 0 1 22 10 20 96 14 9 38 4 2 12 5 3 18 1 0 41 6 0 10 1 0 20 chain 20977 chr11 135006516 + 80080038 80080337 AluY 311 + 13 311 124001 44 9 5 70 22 23 122 1 3 31 chain 6625 chr11 135006516 + 80096733 80096814 THE1B 368 - 287 368 180269 81 chain 13587 chr11 135006516 + 80119522 80119674 L1PA4 6152 + 5999 6151 146026 152 chain 66970 chr11 135006516 + 80137111 80137862 L1PA5 6144 + 5391 6140 49662 744 2 0 5 chain 54550 chr11 135006516 + 80139360 80139960 L1PA2 6032 + 5430 6029 55995 576 1 0 23 chain 17628 chr11 135006516 + 80144807 80145136 L1PA15 4387 + 4037 4356 133911 67 1 0 26 1 0 55 1 0 25 12 7 36 20 17 21 37 38 27 chain 70002 chr11 135006516 + 80156122 80156900 L1PA3long 6157 - 0 778 48396 778 chain 5144 chr11 135006516 + 80197727 80197814 MIR 256 + 82 169 193608 49 7 10 8 3 0 20 chain 22249 chr11 135006516 + 80202968 80203246 AluY 311 + 10 302 119119 47 6 20 225 chain 364409 chr11 135006516 + 80217906 80222284 L1PA7 6471 + 2064 6470 11244 575 0 2 862 1 0 33 6 23 450 3 0 359 0 1 299 0 4 952 1 4 246 25 28 404 3 4 128 0 1 31 chain 9387 chr11 135006516 + 80243297 80243499 LTR12C 1709 - 713 914 163624 42 69 69 48 1 0 42 chain 7240 chr11 135006516 + 80257336 80257443 MER4A1 472 + 0 110 175836 15 6 9 86 chain 53283 chr11 135006516 + 80277196 80277931 L1PB1 5432 - 512 1261 56837 211 6 8 13 0 6 55 3 0 18 7 11 162 1 0 5 1 2 88 0 5 115 3 1 14 5 7 28 chain 24702 chr11 135006516 + 80278748 80279051 THE1A 353 + 0 302 106422 109 2 1 192 chain 121612 chr11 135006516 + 80283856 80285418 THE1A-int 1579 - 6 1579 30504 97 12 28 119 1 0 61 4 0 149 0 2 65 3 4 162 0 3 270 6 1 200 9 8 404 chain 38709 chr11 135006516 + 80365319 80365784 LTR2 463 - 0 463 71140 24 1 0 30 2 1 27 0 1 5 1 0 375 chain 22870 chr11 135006516 + 80366626 80366910 AluSp 311 + 20 304 116227 238 0 3 6 3 0 37 chain 42822 chr11 135006516 + 80394949 80395466 L1PA8 5853 - 0 512 65623 93 1 0 19 2 1 50 1 0 11 1 0 115 1 0 223 chain 10283 chr11 135006516 + 80395471 80395592 L1PA8 5853 + 5179 5300 159217 121 chain 5465 chr11 135006516 + 80408958 80409026 MER41A 554 + 397 466 190362 47 0 1 21 chain 12874 chr11 135006516 + 80430245 80430468 MER30 238 + 0 238 148734 15 20 21 73 4 21 65 10 7 36 chain 23932 chr11 135006516 + 80432716 80433018 AluY 311 + 7 309 110737 84 16 15 26 0 1 176 chain 200024 chr11 135006516 + 80501388 80503637 L1PA4 6152 - 13 2268 19209 47 1 0 438 0 1 345 0 4 361 0 1 1003 0 1 54 chain 115870 chr11 135006516 + 80503637 80504941 L1PA4 6152 + 2572 3877 32507 636 0 1 668 chain 436081 chr11 135006516 + 80509246 80514977 L1PA8 5853 + 108 5853 9163 122 23 19 50 21 9 461 17 0 4 9 0 8 22 49 254 28 29 455 0 1 359 0 1 92 17 0 6 1 0 116 0 17 728 7 6 67 0 1 4 1 0 168 6 7 787 11 21 15 1 0 242 3 5 371 1 0 75 1 13 340 7 5 77 1 0 4 22 28 4 1 0 389 13 13 34 1 0 46 2 0 60 24 32 37 3 2 19 2 1 92 chain 2821 chr11 135006516 + 80581414 80581491 L1MA3 4352 + 4275 4322 228435 7 1 0 6 1 0 25 28 0 9 chain 391440 chr11 135006516 + 80614809 80620247 L1PB1 5432 + 78 5420 10411 327 15 3 110 0 1 93 0 1 142 0 4 648 8 11 158 6 0 45 6 6 89 25 8 289 3 0 216 0 5 141 0 4 117 2 0 346 1 0 88 0 4 28 13 15 359 0 1 22 26 27 128 0 1 204 38 32 211 39 40 75 6 7 297 1 0 4 0 1 241 3 0 87 1 0 101 4 0 19 4 7 76 0 12 85 0 2 20 22 28 5 0 2 32 74 15 20 1 0 9 1 0 11 4 0 12 2 0 48 5 4 14 1 0 44 1 0 16 55 35 15 2 0 24 1 0 21 2 1 12 1 0 16 chain 46803 chr11 135006516 + 80632349 80632945 LTR10C 591 + 0 576 61368 158 31 5 352 0 1 19 1 6 35 chain 259825 chr11 135006516 + 80746459 80750972 HERVK22-int 3844 + 0 3844 15714 43 3 0 85 2 0 268 0 1 869 9 10 6 4 0 7 0 1 73 16 8 9 0 8 173 0 8 248 0 5 274 16 15 65 4 5 42 0 5 11 10 5 6 0 6 92 0 1 4 0 3 190 0 1 497 1 0 8 0 1 65 8 6 18 1 0 35 1 0 15 8 6 33 21 16 37 50 37 12 14 8 5 2 0 10 1 0 7 69 48 15 15 11 29 1 0 4 817 192 86 8 7 31 2 0 58 chain 20189 chr11 135006516 + 80773168 80773466 MER51B 395 + 97 395 126568 93 1 0 13 0 1 23 6 5 18 13 14 131 chain 83215 chr11 135006516 + 80805372 80806290 L1PA4 6152 - 1 928 42246 51 0 4 787 0 5 80 chain 9378 chr11 135006516 + 80833452 80833557 LTR7 482 + 377 482 163658 105 chain 257928 chr11 135006516 + 80833559 80836863 HERVH-int 3825 + 0 3825 15812 333 2 1 52 53 0 13 44 352 12 0 2 15 2 0 6 11 16 424 15 0 205 9 0 39 1 0 39 0 1 175 5 33 283 1 0 19 0 3 63 5 10 55 0 31 904 0 3 31 9 219 128 0 1 5 2 0 289 5 13 50 chain 28684 chr11 135006516 + 80838120 80838497 LTR7 482 + 1 446 90388 67 9 47 109 0 1 24 2 0 17 0 31 149 chain 19916 chr11 135006516 + 80848712 80848985 L1PA7 6471 - 1 275 127411 159 16 17 98 chain 35640 chr11 135006516 + 80881907 80882395 MLT2A1 477 - 0 477 75355 52 5 0 11 19 0 10 3 19 216 5 2 167 chain 75091 chr11 135006516 + 80882395 80883467 HERVL-int 5654 - 0 5654 45973 271 5 9 150 1 2 55 4 0 70 0 2 254 4 3 29 0 4580 229 chain 16272 chr11 135006516 + 80883467 80883800 MLT2A1 477 - 0 270 137545 39 130 67 164 chain 14058 chr11 135006516 + 80883809 80884008 MLT2A1 477 - 279 477 144356 30 3 0 48 0 1 77 10 11 31 chain 18998 chr11 135006516 + 80887702 80888011 MER1B 344 - 35 341 130118 28 28 29 30 4 0 130 11 12 22 1 0 55 chain 5249 chr11 135006516 + 80893051 80893175 Tigger1 2417 - 2275 2416 192535 40 21 23 11 19 34 33 chain 83071 chr11 135006516 + 80897768 80898913 MER11A 1151 - 0 1140 42302 53 0 2 155 18 14 25 0 35 5 3 0 56 2 1 244 2 1 21 4 6 89 0 1 54 0 1 70 35 0 24 1 0 4 0 1 90 2 0 21 8 0 91 0 8 68 chain 2338 chr11 135006516 + 80898573 80898598 MER11A 1151 - 800 825 234905 25 chain 18969 chr11 135006516 + 80913609 80913853 L1PREC2 3366 - 1056 1301 130186 144 6 7 94 chain 16934 chr11 135006516 + 80919128 80919393 LTR12C 1709 + 932 1203 135768 135 8 55 37 41 0 44 chain 26903 chr11 135006516 + 80926026 80926394 THE1B 368 - 0 368 96619 165 3 1 27 4 3 127 0 5 27 2 0 13 chain 21424 chr11 135006516 + 80939762 80940001 L1PA3long 6157 + 5918 6157 122427 239 chain 3467 chr11 135006516 + 80954628 80954692 MADE1 96 - 13 95 215850 27 14 32 23 chain 61376 chr11 135006516 + 80971867 80972541 L1PA3long 6157 + 5483 6157 52161 674 chain 30907 chr11 135006516 + 80991032 80991425 LTR7 482 - 6 482 82672 168 0 1 13 0 31 38 0 1 73 0 50 101 chain 76166 chr11 135006516 + 80995989 80997023 MER11A 1151 + 0 1151 45386 58 3 102 134 4 0 32 1 3 59 0 1 51 3 4 90 12 13 137 0 1 151 1 0 24 44 1 88 0 60 142 chain 3025 chr11 135006516 + 81060780 81060861 MER3 215 + 7 88 224463 20 31 31 30 chain 79294 chr11 135006516 + 81068957 81069931 L1PA7 6471 + 5490 6469 43913 131 0 3 74 0 2 598 10 11 10 2 4 138 3 0 8 chain 40394 chr11 135006516 + 81070279 81070824 MER41A 554 - 0 554 68747 5 1 0 4 0 1 73 1 6 66 1 2 24 5 7 272 0 1 93 chain 4946 chr11 135006516 + 81070859 81071053 MER6B 211 + 3 211 195742 16 119 133 59 chain 3549 chr11 135006516 + 81079124 81079164 LTR12C 1709 - 832 872 214566 40 chain 58823 chr11 135006516 + 81119464 81120145 L1PA7 6471 + 5788 6468 53507 98 0 1 4 1 0 459 1 0 118 chain 16846 chr11 135006516 + 81121530 81121769 L1PA8 5853 - 8 243 135995 85 1 0 17 1 0 42 9 8 14 2 1 68 chain 27388 chr11 135006516 + 81143794 81144079 AluYa5 310 - 25 310 95009 285 chain 15689 chr11 135006516 + 81156588 81156765 L1PA4 6152 + 5964 6141 139305 177 chain 26943 chr11 135006516 + 81165256 81165558 AluYg6 310 + 0 296 96475 126 5 0 98 1 0 72 chain 83667 chr11 135006516 + 81166905 81167976 L1PA6 6164 + 5105 6162 42049 116 0 1 85 0 11 72 1 3 78 4 0 121 13 11 386 5 4 108 24 5 50 2 0 6 chain 5415 chr11 135006516 + 81170028 81170092 MSTA 426 + 362 426 190840 64 chain 114894 chr11 135006516 + 81212204 81213599 L1PA6 6164 + 4753 6160 32822 456 0 4 102 1 0 89 3 6 73 0 1 20 0 3 154 2 0 91 0 5 76 0 1 169 16 15 135 1 0 7 chain 4910 chr11 135006516 + 81233055 81233116 MER2B 336 + 169 230 196158 61 chain 544115 chr11 135006516 + 81245340 81251463 L1PA4 6152 - 6 6152 2197 254 1 0 586 1 5 816 0 2 544 0 1 46 0 2 677 5 4 1258 0 1 104 0 1 1693 0 14 138 chain 15949 chr11 135006516 + 81261684 81261912 L1P4 1494 + 1058 1285 138520 76 9 8 143 chain 107349 chr11 135006516 + 81274578 81275886 L1PA7 6471 - 7 1341 34879 6 0 2 171 0 3 661 2 0 6 5 6 102 0 16 158 1 7 196 chain 62445 chr11 135006516 + 81310479 81311185 L1PA3long 6157 - 1 703 51696 4 1 0 10 4 1 687 chain 59649 chr11 135006516 + 81311193 81311848 L1PA3long 6157 + 4776 5431 53021 655 chain 43016 chr11 135006516 + 81345223 81345764 MER41A 554 + 0 554 65403 223 0 7 39 0 1 245 0 5 34 chain 14648 chr11 135006516 + 81372134 81372443 MSTA 426 - 0 359 142427 102 5 24 37 65 68 35 28 56 37 chain 7759 chr11 135006516 + 81410621 81410703 L1PA5 6144 + 6050 6132 172548 82 chain 61998 chr11 135006516 + 81412044 81412923 L1PA8A 6298 - 7 856 51904 119 0 1 265 50 5 20 0 4 7 18 19 33 0 9 24 0 1 4 1 0 338 chain 54319 chr11 135006516 + 81412927 81413638 L1PA8A 6298 + 4698 5416 56152 95 3 7 21 5 0 383 0 1 59 7 14 138 chain 7814 chr11 135006516 + 81440817 81440954 THE1D-int 1627 + 0 133 172227 12 0 2 24 29 23 72 chain 17766 chr11 135006516 + 81450227 81450569 THE1B 368 - 20 366 133525 27 10 11 4 1 0 92 0 4 7 1 2 26 2 1 51 58 59 37 1 0 25 chain 5665 chr11 135006516 + 81455285 81455352 LTR12C 1709 - 991 1058 188431 67 chain 7135 chr11 135006516 + 81458086 81458218 L1PA8 5853 - 0 128 176510 19 18 16 58 1 0 19 2 1 15 chain 30550 chr11 135006516 + 81480983 81481439 LTR7 482 + 0 475 83340 35 0 1 65 15 14 110 6 36 104 13 1 53 13 14 42 chain 46745 chr11 135006516 + 81505618 81506174 L1PA6 6164 - 278 838 61418 433 0 1 41 5 8 77 chain 23394 chr11 135006516 + 81508110 81508557 MLT2A2 560 - 0 556 113679 54 0 1 6 1 0 24 0 1 61 2 111 35 118 117 146 chain 5507 chr11 135006516 + 81513119 81513184 MER4A1 472 - 0 65 189971 65 chain 23486 chr11 135006516 + 81513273 81513670 LTR7 482 + 0 467 113189 69 6 95 16 51 0 44 8 40 96 2 1 5 0 1 100 chain 21769 chr11 135006516 + 81517261 81517596 LTR7 482 + 0 470 121135 69 6 95 48 0 11 40 1 32 10 0 3 4 1 0 74 16 18 66 chain 311099 chr11 135006516 + 81517610 81521497 HERVH-int 3825 + 0 3825 12955 333 2 1 137 12 14 48 1 0 37 12 10 24 29 0 14 1 38 45 83 1 77 1 0 920 0 1 370 0 1 73 0 5 281 21 22 309 0 5 274 0 2 30 1 0 386 0 1 366 chain 3310 chr11 135006516 + 81518305 81518388 HERVH-int 3825 + 622 661 200721 9 24 0 24 23 3 3 chain 24106 chr11 135006516 + 81523890 81524339 MER4E 760 + 329 752 109713 31 98 95 74 32 9 214 chain 11194 chr11 135006516 + 81538666 81538800 L1PA7 6471 - 7 141 155444 134 chain 29532 chr11 135006516 + 81556228 81556538 AluYa5 310 - 0 310 86521 310 chain 7833 chr11 135006516 + 81556943 81557130 L1MA3 4352 + 3781 3969 172104 33 30 29 36 39 41 49 chain 9981 chr11 135006516 + 81570133 81570257 L1PA8 5853 - 0 122 160671 93 1 0 16 1 0 13 chain 4541 chr11 135006516 + 81578609 81578660 MADE1 96 + 45 96 200322 51 chain 300358 chr11 135006516 + 81611964 81615417 L1P1 4361 + 721 4328 13402 107 5 1 102 0 1 502 2 1 676 0 151 118 0 4 446 0 4 524 1 0 357 5 6 429 2 1 21 0 1 132 1 0 23 chain 41657 chr11 135006516 + 81627812 81628298 L1PA5 6144 + 5612 6098 67082 486 chain 5802 chr11 135006516 + 81637292 81637359 L1PA8 5853 - 6 73 187125 67 chain 7391 chr11 135006516 + 81637359 81637493 L1PA8 5853 + 5653 5783 174823 25 2 1 9 8 7 44 7 6 15 1 0 23 chain 37472 chr11 135006516 + 81658071 81658578 MLT2A2 560 + 0 506 72854 269 8 0 130 3 14 60 17 13 20 chain 27702 chr11 135006516 + 81659629 81659942 L1PA5 6144 + 5831 6144 94033 313 chain 25883 chr11 135006516 + 81662392 81662731 LTR2 463 + 122 462 100515 237 15 16 87 chain 234931 chr11 135006516 + 81664259 81667263 Harlequin-int 5206 + 135 4020 17033 14 2 0 221 4 0 112 3 0 404 0 778 295 0 6 330 1 0 265 13 7 175 5 11 307 0 3 318 7 6 20 2 0 17 32 41 101 0 1 4 10 105 12 1 2 108 22 23 199 chain 27135 chr11 135006516 + 81667536 81667876 LTR2 463 + 122 463 95811 240 12 13 88 chain 10858 chr11 135006516 + 81697148 81697569 LTR12C 1709 - 574 914 156755 17 52 169 36 119 0 30 78 0 46 1 0 42 chain 15515 chr11 135006516 + 81701113 81701680 LTR12C 1709 - 174 774 139841 41 9 8 93 323 356 81 6 7 14 chain 199673 chr11 135006516 + 81710248 81713418 MER52-int 3354 - 84 3214 19232 25 1 0 13 1 0 12 1 0 4 1 0 28 2 0 7 2 0 7 7 5 5 2 0 33 13 11 14 1 0 33 1 0 4 8 6 6 2 0 9 13 11 17 1 0 35 3 1 42 1 0 13 8 7 15 2 0 12 1 0 8 21 33 14 1 0 7 1 0 36 13 10 7 1 0 356 1 0 326 11 12 110 4 0 272 1 0 7 1 0 17 33 49 56 7 6 180 0 1 47 11 12 52 11 12 53 0 1 158 1 0 52 7 5 21 0 1 149 3 2 9 1 0 15 5 3 23 0 2 87 0 1 78 1 0 59 2 0 9 1 0 14 3 1 8 2 0 12 2 1 62 2 1 27 3 0 23 7 6 31 1 0 15 9 8 12 2 1 17 63 55 26 19 18 59 chain 34591 chr11 135006516 + 81736449 81736894 LTR7 482 + 0 476 76766 101 15 14 151 0 31 68 1 2 109 chain 261292 chr11 135006516 + 81736902 81740298 HERVH-int 3825 + 0 3825 15632 163 0 1 168 5 4 63 76 21 16 38 322 5 0 2 15 2 0 7 3 8 93 24 24 274 10 7 30 15 0 157 0 1 50 9 0 24 0 2 1635 0 3 25 8 218 198 0 3 75 0 3 208 chain 34683 chr11 135006516 + 81741600 81742056 LTR7 482 + 0 482 76646 101 15 14 115 0 31 46 0 1 47 7 2 125 chain 6018 chr11 135006516 + 81746222 81746564 MSTB 430 - 44 408 185065 28 0 1 5 143 166 28 2 0 18 54 53 13 26 27 25 chain 3861 chr11 135006516 + 81757642 81757685 THE1C-int 1605 + 110 153 209454 43 chain 527257 chr11 135006516 + 81831007 81837131 L1PA4 6152 + 12 6137 4473 113 17 3 14 11 25 35 0 1 331 4 0 338 1 0 963 0 1 452 3 0 30 3 4 247 6 10 1338 5 1 1446 1 0 538 0 7 228 chain 11888 chr11 135006516 + 81850910 81851062 L1PA17 2846 + 2115 2269 152660 6 0 1 139 0 1 7 chain 20234 chr11 135006516 + 81856768 81857060 L1PA8 5853 + 5562 5853 126429 46 2 0 66 2 5 14 13 12 37 1 0 18 1 0 54 0 1 38 chain 563962 chr11 135006516 + 81866907 81872933 L1HS 6032 + 7 6032 240 3054 1 0 2971 chain 45339 chr11 135006516 + 81879893 81880456 L1PA7 6471 - 22 582 62668 183 1 3 358 5 0 16 chain 115321 chr11 135006516 + 81880749 81882028 L1PA3long 6157 - 0 1282 32673 611 0 3 668 chain 111459 chr11 135006516 + 81882028 81883275 L1PA3long 6157 + 3632 4881 33762 942 0 1 67 0 1 238 chain 144207 chr11 135006516 + 81892216 81893908 SVA_D 2077 + 12 2065 25440 24 6 0 855 2 271 19 21 108 25 0 1 15 40 0 45 5 54 15 0 1 620 chain 1165 chr11 135006516 + 81893183 81893222 SVA_D 2077 + 813 852 141243 39 chain 7150 chr11 135006516 + 81910342 81910433 L1PB4 2604 + 2461 2552 176406 91 chain 12991 chr11 135006516 + 81949087 81949227 L1PA5 6144 + 5744 5884 148277 140 chain 5098 chr11 135006516 + 81952414 81952470 L1PA4 6152 + 6049 6105 194102 56 chain 4063 chr11 135006516 + 81952471 81952516 L1PA4 6152 + 6107 6152 206434 45 chain 469994 chr11 135006516 + 81989342 81994531 L1PA3long 6157 + 968 6157 8035 1908 0 1 338 2 0 2091 0 1 850 chain 6222 chr11 135006516 + 81994539 81994615 L1P1 4361 - 36 111 183389 20 1 0 55 chain 47088 chr11 135006516 + 81994633 81995156 L1PA4 6152 + 5302 5825 61133 523 chain 28572 chr11 135006516 + 81995161 81995488 L1PA4 6152 + 5825 6152 90855 327 chain 28900 chr11 135006516 + 82019071 82019376 AluYa8 305 + 0 305 89455 305 chain 57199 chr11 135006516 + 82024542 82025398 L1PA8 5853 + 5066 5853 54408 9 1 0 11 1 0 84 8 9 189 1 0 114 10 4 78 1 0 44 2 0 6 58 3 62 8 7 54 3 2 18 1 0 93 chain 76648 chr11 135006516 + 82029483 82030407 L1PA7 6471 + 5543 6469 45141 78 1 0 298 0 1 478 2 0 5 0 2 51 0 2 11 chain 46801 chr11 135006516 + 82034460 82034972 L1PA3long 6157 - 0 512 61369 512 chain 76048 chr11 135006516 + 82049497 82050356 L1PA3long 6157 - 15 875 45449 319 1 0 361 0 2 178 chain 8286 chr11 135006516 + 82053418 82053519 L1P4 1494 - 1177 1278 169476 101 chain 268774 chr11 135006516 + 82054238 82057320 L1PA5 6144 + 1568 6132 15246 945 5 0 556 2 0 210 1 0 762 0 1 244 0 1487 85 1 3 271 chain 94171 chr11 135006516 + 82063023 82064098 L1PA7 6471 - 390 1463 38308 151 1 0 309 1 0 613 chain 32439 chr11 135006516 + 82064108 82064490 L1PA7 6471 + 6087 6466 80131 372 3 0 7 chain 23356 chr11 135006516 + 82078888 82079260 L1PA17 2846 + 2333 2693 113898 17 2 0 152 24 15 15 2 1 99 1 0 18 1 0 26 3 5 12 chain 10270 chr11 135006516 + 82081494 82081603 L1PA4 6152 + 6043 6152 159281 109 chain 10625 chr11 135006516 + 82082444 82082568 L1PA5 6144 - 6 130 157708 124 chain 28788 chr11 135006516 + 82083457 82083828 MLT2A1 477 + 0 379 89952 13 0 3 126 0 1 25 1 5 206 chain 3222 chr11 135006516 + 82084156 82084193 MLT2A2 560 - 13 50 220547 37 chain 20058 chr11 135006516 + 82099212 82099540 THE1B 368 + 8 367 126944 36 11 28 100 10 9 17 30 45 124 chain 10599 chr11 135006516 + 82108536 82108651 L1PA5 6144 + 6017 6132 157832 115 chain 13625 chr11 135006516 + 82111992 82112244 Tigger1 2417 - 2084 2323 145884 46 28 29 77 0 1 28 18 0 14 6 9 35 chain 4434 chr11 135006516 + 82115414 82115497 LTR12C 1709 + 785 1068 201540 24 1 82 18 5 124 35 chain 3395 chr11 135006516 + 82115506 82115548 LTR12C 1709 + 795 837 217184 42 chain 80515 chr11 135006516 + 82123038 82123928 L1PA3long 6157 - 0 893 43382 10 1 4 879 chain 14375 chr11 135006516 + 82124429 82124580 AluYb8 318 + 157 308 143285 151 chain 14824 chr11 135006516 + 82146346 82146545 L1PA8 5853 + 5658 5853 141869 21 1 0 9 1 0 52 3 2 18 1 0 93 chain 6008 chr11 135006516 + 82153099 82153182 LTR43B 570 + 212 297 185168 28 1 2 50 0 1 4 chain 5374 chr11 135006516 + 82153311 82153372 L1MB2 1706 + 982 1043 191254 61 chain 59672 chr11 135006516 + 82175597 82176445 L1PA16 3655 - 65 916 53008 13 3 0 259 36 34 11 0 1 12 7 10 49 1 0 222 0 2 73 2 1 17 1 5 142 chain 19508 chr11 135006516 + 82188370 82188663 MER4A1 472 + 0 316 128635 33 1 0 147 18 19 17 1 2 7 0 21 45 2 3 22 chain 107426 chr11 135006516 + 82192168 82193512 L1PA8A 6298 - 7 1366 34859 372 0 11 417 0 3 177 2 0 155 8 2 92 0 1 114 0 8 7 chain 10133 chr11 135006516 + 82200157 82200336 L1PB2 3958 - 120 293 159932 63 2 1 27 29 25 41 1 0 16 chain 130240 chr11 135006516 + 82212018 82213576 LTR12C 1709 + 0 1709 28033 266 0 1 169 0 1 262 0 159 253 1 0 6 2 0 107 0 4 182 11 0 299 chain 25187 chr11 135006516 + 82213958 82214258 AluY 311 + 2 302 103813 121 1 0 9 0 1 169 chain 24054 chr11 135006516 + 82216601 82217013 LOR1b 457 - 0 420 110022 22 28 28 21 0 3 75 64 69 202 chain 306834 chr11 135006516 + 82227828 82231647 L1PA3long 6157 - 10 3827 13139 33 2 3 53 0 225 12 225 1 483 1 0 4 0 1 22 0 3 1014 0 1 106 0 1 57 0 1 574 1 0 72 2 1 60 1 0 314 1 0 343 1 0 233 5 0 200 chain 14811 chr11 135006516 + 82259232 82259431 L1PA8 5853 - 6 216 141908 87 1 0 19 3 2 51 0 13 38 chain 26067 chr11 135006516 + 82259766 82260489 THE1C 375 + 0 363 99769 11 4 5 87 377 17 229 1 0 14 chain 34021 chr11 135006516 + 82279875 82280314 MLT2A1 477 - 0 468 77592 61 3 31 205 0 1 8 5 2 152 0 3 5 chain 26833 chr11 135006516 + 82292525 82292854 L1PA7 6471 + 6140 6470 96862 106 0 1 223 chain 31559 chr11 135006516 + 82335544 82335929 MLT2A1 477 + 0 379 81545 169 4 1 153 3 0 56 chain 126923 chr11 135006516 + 82336729 82338244 HERV9-int 5642 + 3774 5283 28833 26 3 0 413 2 0 771 1 2 4 1 0 240 1 0 53 chain 123455 chr11 135006516 + 82364269 82365827 THE1A-int 1579 + 0 1572 29898 305 0 6 343 0 3 25 1 0 20 1 0 151 0 7 116 0 1 29 2 1 293 0 1 73 1 0 198 chain 31275 chr11 135006516 + 82371482 82371864 MLT2A1 477 - 95 477 82028 183 0 1 18 0 1 8 3 0 124 0 1 46 chain 5727 chr11 135006516 + 82373486 82373548 L1PA5 6144 - 741 803 187869 62 chain 65159 chr11 135006516 + 82373549 82374281 L1PA5 6144 + 5411 6144 50496 399 0 1 333 chain 134961 chr11 135006516 + 82387952 82390078 HUERS-P3b-int 2065 - 35 2052 27020 89 1 0 58 4 0 52 35 29 73 10 8 84 1 0 23 1 0 13 2 0 18 3 23 43 25 2 43 2 1 246 5 6 19 2 0 33 2 1 311 17 16 11 1 0 54 2 1 11 4 5 70 4 0 87 21 19 265 75 0 17 4 0 20 8 10 111 4 5 50 11 9 12 0 1 7 21 20 41 chain 17521 chr11 135006516 + 82398813 82399019 L1PA5 6144 + 5937 6143 134205 206 chain 21016 chr11 135006516 + 82440932 82441286 THE1D 372 - 0 365 123862 32 1 0 67 0 1 38 27 28 12 17 25 6 0 1 81 10 11 63 chain 62112 chr11 135006516 + 82446602 82447345 L1PA5 6144 + 5397 6139 51846 305 14 0 7 0 1 189 5 17 223 chain 111046 chr11 135006516 + 82456571 82459610 L1MA2 4263 + 1924 4111 33918 46 1 0 41 0 1 117 7 3 106 0 1 4 1 0 77 8 17 148 0 1 155 1472 632 52 1 0 7 0 1 251 6 2 76 1 0 147 3 0 129 29 27 93 7 0 47 1 0 6 chain 41635 chr11 135006516 + 82460017 82460516 MER9a3 513 - 0 513 67113 57 4 0 47 0 2 147 0 10 162 0 6 82 chain 107770 chr11 135006516 + 82472525 82473814 L1PA7 6471 - 1 1303 34784 154 0 1 176 6 3 291 1 0 220 1 4 108 0 13 332 chain 31586 chr11 135006516 + 82473832 82474189 L1PA4 6152 + 5793 6152 81515 39 0 1 310 0 1 8 chain 26962 chr11 135006516 + 82474197 82474594 LTR15 485 + 23 452 96401 79 0 1 46 0 2 23 0 2 62 1 2 36 0 4 34 1 8 9 6 22 33 1 2 40 0 1 8 1 0 5 2 0 10 chain 22276 chr11 135006516 + 82476291 82476593 AluSg7 307 - 8 307 119014 86 2 0 7 1 2 44 1 0 114 10 9 37 chain 129535 chr11 135006516 + 82487738 82489790 L1M1 2793 + 660 2697 28198 33 130 110 28 2 0 8 1 0 50 41 35 70 1 0 4 0 1 5 1 0 13 0 2 17 1 0 58 0 2 83 1 0 23 0 7 41 4 0 12 1 0 6 4 0 5 2 0 101 0 1 231 0 1 287 0 2 46 9 14 27 1 5 8 0 1 11 0 4 42 24 26 22 0 3 280 5 6 46 4 0 191 1 0 20 13 11 15 1 2 9 1 0 12 chain 47610 chr11 135006516 + 82529402 82529981 LTR22 571 + 0 571 60757 78 1 0 174 11 4 315 chain 86008 chr11 135006516 + 82542764 82543829 L1PA7 6471 - 1 1083 41153 146 6 8 184 0 1 137 1 4 59 1 10 25 0 2 273 1 0 140 0 1 92 chain 20524 chr11 135006516 + 82566698 82567065 L1PA16 3655 + 2892 3261 125559 12 0 4 14 1 0 60 8 10 13 0 1 74 3 0 18 50 51 52 1 0 30 1 0 30 chain 27103 chr11 135006516 + 82587498 82587851 THE1A 353 + 0 353 95934 81 3 4 25 1 0 243 chain 130985 chr11 135006516 + 82587851 82589421 THE1A-int 1579 + 0 1577 27864 306 1 2 132 0 2 90 0 1 75 1 2 366 0 1 306 1 2 292 chain 16116 chr11 135006516 + 82589423 82589622 THE1A 353 + 0 203 138002 111 0 3 60 0 1 28 chain 164631 chr11 135006516 + 82589622 82591695 L1P2 5180 - 3064 5178 22718 295 0 9 382 0 5 470 0 25 93 0 1 42 2 1 6 1 0 204 4 3 65 1 0 7 5 0 259 3 2 79 14 25 141 chain 28679 chr11 135006516 + 82593533 82593836 AluYa5 310 - 7 310 90417 303 chain 41004 chr11 135006516 + 82620036 82620573 MER41A 554 - 0 554 67897 81 0 5 43 0 10 6 1 5 383 6 4 17 chain 382985 chr11 135006516 + 82628214 82634083 L1PB1 5432 - 12 5320 10664 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 14 8 0 17 3 0 16 1 0 43 7 6 10 3 2 49 3 1 9 7 4 9 1 0 9 1 0 18 19 17 50 2 1 5 0 1 345 1 0 10 0 14 48 4 1 122 9 10 35 0 6 30 0 23 96 8 28 70 8 15 264 0 8 94 2 3 85 37 13 526 2 0 267 21 25 62 299 8 138 6 10 103 0 5 85 1 0 361 0 1 160 1 0 218 3 4 34 0 3 39 1 0 27 0 6 103 0 4 140 9 0 5 0 2 47 1 0 45 329 0 695 1 2 10 5 9 76 1 25 75 2 0 84 2 0 70 1 0 86 27 26 28 chain 117843 chr11 135006516 + 82654535 82656106 THE1B-int 1605 - 0 1605 31852 73 0 2 95 9 12 79 0 1 121 0 1 265 0 1 10 8 7 41 25 26 191 2 0 213 10 35 134 5 6 275 0 2 15 chain 7055 chr11 135006516 + 82660185 82660265 L1PA5 6144 - 0 84 177065 11 0 4 69 chain 477634 chr11 135006516 + 82661417 82667882 L1PA6 6164 - 3 6161 7808 8 4 0 149 1 2 196 1 0 498 1 0 512 1 0 180 13 14 204 0 1 27 2 10 174 7 8 282 0 1 168 1 0 380 1 2 94 8 12 526 0 3 168 3 0 90 0 2 124 0 1 57 0 1 538 1 0 608 16 0 32 0 3 30 1 0 5 12 13 50 24 24 155 0 17 51 22 1 173 76 0 58 12 2 58 19 0 38 324 126 282 chain 140631 chr11 135006516 + 82674835 82676651 L1PA13 3608 - 224 2125 26047 35 0 1 13 1 0 62 2 0 116 1 0 20 12 5 123 0 12 38 0 1 271 0 58 19 0 5 58 0 1 130 2 0 86 0 1 88 0 1 171 1 5 113 0 3 114 0 11 107 8 7 109 0 1 116 chain 27515 chr11 135006516 + 82677240 82677539 AluYk11 308 + 5 304 94617 299 chain 14280 chr11 135006516 + 82682307 82682570 LTR12C 1709 + 650 837 143619 62 0 2 88 78 0 35 chain 24229 chr11 135006516 + 82693624 82693911 AluSx4 309 + 1 288 109047 287 chain 27089 chr11 135006516 + 82711813 82712112 AluYd8 298 + 0 293 95978 106 6 0 187 chain 22871 chr11 135006516 + 82714461 82714752 AluSp 311 - 9 301 116224 159 11 12 121 chain 62196 chr11 135006516 + 82728798 82730043 L1PB2 3958 - 122 1053 51806 54 8 7 26 2 0 70 1 0 20 0 1 41 1 0 31 317 4 23 3 0 5 0 1 4 3 4 94 2 0 6 8 6 55 15 8 13 1 0 56 2 0 101 1 2 153 0 13 53 3 7 22 0 1 31 1 0 19 chain 6543 chr11 135006516 + 82740791 82740869 L1PB2 3958 + 3761 3838 180900 14 1 0 63 chain 23279 chr11 135006516 + 82751359 82751652 AluSp 311 + 11 300 114300 57 3 0 176 1 0 56 chain 2772 chr11 135006516 + 82772323 82772359 MLT2B3 573 + 535 573 229179 16 0 2 20 chain 22045 chr11 135006516 + 82811211 82811458 AluY 311 + 9 258 120042 122 0 2 125 chain 139131 chr11 135006516 + 82843632 82845216 SVA_D 2077 + 6 2056 26273 18 12 1 11 1 2 504 0 40 296 0 83 73 9 10 14 0 352 646 chain 49249 chr11 135006516 + 82887311 82887886 L1PA6 6164 + 5588 6161 59554 428 1 0 131 1 0 14 chain 24341 chr11 135006516 + 82900384 82900671 AluYc3 301 + 0 291 108415 119 0 2 82 0 2 86 chain 23876 chr11 135006516 + 82901037 82901337 AluSc 308 - 13 308 111046 15 3 0 74 3 1 205 chain 42669 chr11 135006516 + 82903022 82903533 HERV1_LTRb 511 + 0 511 65819 88 2 0 127 0 1 279 0 1 15 chain 122180 chr11 135006516 + 82912040 82913628 L1PA8 5853 - 3 1593 30320 81 13 12 16 2 1 38 10 9 14 2 1 70 2 0 44 1 0 49 1 0 48 0 4 76 0 2 50 9 1 229 0 3 93 0 2 19 0 4 390 0 1 4 23 26 39 6 5 259 chain 11371 chr11 135006516 + 82926521 82926833 L1M3f 2199 - 61 369 154812 20 24 15 5 2 0 28 1 0 38 13 16 12 1 0 11 9 12 54 65 68 29 chain 11367 chr11 135006516 + 82927771 82927899 LTR30 714 - 584 712 154827 128 chain 34480 chr11 135006516 + 82929939 82930867 HERV30-int 1034 - 274 897 76942 25 39 0 37 132 51 17 158 67 42 15 0 89 1 0 25 3 1 52 13 1 5 0 1 35 5 0 51 33 0 61 1 0 38 8 2 13 20 0 10 chain 11772 chr11 135006516 + 82931500 82931655 LTR30 714 - 0 167 153168 65 0 8 7 4 8 79 chain 197245 chr11 135006516 + 82941927 82944711 L1MA2 4263 - 178 2922 19406 21 13 6 28 0 1 64 2 1 6 1 0 149 3 0 104 1 0 43 3 2 72 8 4 9 0 2 113 0 7 259 2 1 49 10 0 50 45 20 12 1 0 24 0 1 123 8 2 185 12 11 4 0 1 66 1 0 3 2 0 6 1 2 101 3 1 171 0 3 28 11 20 43 7 8 19 0 1 46 1 0 25 2 0 25 0 3 75 1 0 262 0 1 13 9 0 110 0 4 99 0 1 88 9 6 30 0 3 86 0 4 17 chain 19700 chr11 135006516 + 82975511 82975737 L1HS 6032 - 4282 4514 127852 69 1 0 128 0 7 28 chain 36580 chr11 135006516 + 82975737 82976140 L1PA3long 6157 + 5734 6138 74125 390 0 1 13 chain 510922 chr11 135006516 + 82977178 82983297 L1PA6 6164 + 0 6162 6077 236 0 2 279 0 2 48 1 0 220 0 17 318 11 7 17 0 2 241 0 1 149 0 4 28 0 2 281 1 6 353 0 2 110 4 0 433 6 0 386 61 21 5 1 0 10 12 11 4 1 0 144 5 7 359 9 11 179 0 1 275 0 4 124 0 1 72 1 3 203 0 25 584 0 1 104 0 4 18 0 5 654 1 7 32 1 5 21 0 6 9 1 0 98 0 2 9 chain 175161 chr11 135006516 + 83026661 83028894 SVA_D 2077 - 1 2077 21438 337 0 10 328 9 8 4 0 1 141 98 0 179 2 53 60 51 12 26 3 1 8 4 0 11 78 0 116 0 5 209 0 1 545 1 0 5 1 0 12 1 0 4 chain 6237 chr11 135006516 + 83027480 83027578 SVA_D 2077 - 957 1057 116976 76 0 1 7 1 2 14 chain 4386 chr11 135006516 + 83027819 83027870 SVA_D 2077 - 769 820 91658 51 chain 6708 chr11 135006516 + 83027922 83028000 SVA_D 2077 - 870 948 91658 78 chain 41294 chr11 135006516 + 83048578 83049439 L1PA16 3655 + 2816 3578 67538 5 0 1 82 1 0 18 17 24 11 17 19 13 5 6 88 1 0 135 151 29 43 2 0 23 63 64 108 4 19 74 chain 28923 chr11 135006516 + 83053033 83053434 LTR7 482 - 6 482 89356 34 0 4 11 1 0 40 1 3 89 0 31 41 1 2 104 10 48 69 chain 162839 chr11 135006516 + 83054053 83056227 HERVH-int 3825 - 1439 3825 22958 239 0 4 42 10 15 509 5 0 107 1 0 28 0 4 9 9 0 606 0 1 27 11 280 17 0 2 11 126 89 63 1 0 135 20 0 198 chain 34771 chr11 135006516 + 83057786 83058220 LTR2 463 - 10 463 76515 171 1 0 91 25 45 146 chain 35860 chr11 135006516 + 83078609 83079124 LTR10G 522 + 0 522 75052 17 0 8 62 11 4 119 14 23 104 24 18 5 0 2 87 0 2 61 1 0 10 chain 320997 chr11 135006516 + 83093742 83097855 L1P3 4156 + 3 4139 12557 45 23 26 175 14 13 27 7 6 27 1 0 87 1 0 79 0 24 119 0 1 576 1 5 133 23 21 4 0 1 6 1 0 249 0 1 358 2 0 272 1 0 496 0 4 113 0 1 19 0 3 199 0 4 58 1 0 103 15 0 15 4 5 161 0 3 104 0 4 20 7 9 242 9 5 281 2 0 9 1 0 23 chain 7012 chr11 135006516 + 83105506 83105609 MER58A 224 - 15 116 177381 38 10 8 55 chain 100362 chr11 135006516 + 83105720 83106807 L1PA2 6032 - 1 1088 36616 1087 chain 137376 chr11 135006516 + 83106807 83108341 L1P1 4361 + 2506 4041 26579 744 0 1 790 chain 2975 chr11 135006516 + 83113296 83113328 L1MC5 759 + 683 715 225520 32 chain 338423 chr11 135006516 + 83124080 83128199 L1PA7 6471 - 13 4192 11945 32 1 2 50 1 9 40 11 4 7 0 7 7 1 2 495 0 1 167 0 1 10 0 3 266 0 1 287 20 32 50 1 0 30 0 1 137 0 4 399 7 9 115 0 4 284 2 0 473 1 0 176 0 3 385 11 14 303 7 10 309 6 22 28 chain 20233 chr11 135006516 + 83128200 83128488 L1PA15 4387 + 3894 4179 126435 31 12 11 168 1 0 26 1 0 49 chain 28326 chr11 135006516 + 83130186 83130576 LTR7 482 + 9 470 91845 60 10 48 107 8 40 122 0 2 39 1 0 43 chain 210343 chr11 135006516 + 83130590 83133769 HERVH-int 3825 + 0 3565 18483 333 1 0 77 11 10 37 79 75 13 0 1 12 174 192 28 1 0 99 10 9 340 15 0 204 9 0 142 5 0 114 23 50 45 64 49 174 1 5 15 0 3 59 5 10 270 4 15 421 14 384 57 18 17 166 7 13 9 7 1 116 chain 8302 chr11 135006516 + 83136114 83136356 MER61A 341 - 10 291 169386 4 1 0 35 52 53 24 53 93 37 1 0 35 chain 32650 chr11 135006516 + 83141227 83141645 PABL_B 668 + 0 427 79762 37 6 8 233 1 0 57 3 11 81 chain 31122 chr11 135006516 + 83141660 83142093 LTR7 482 - 15 482 82299 190 0 31 25 0 10 96 19 13 69 3 2 31 chain 240139 chr11 135006516 + 83144138 83147126 HERVH-int 3825 - 0 3797 16765 398 27 28 8 0 4 298 0 3 736 0 4 16 0 9 293 1 13 118 6 9 311 5 0 107 2 1 28 18 9 81 8 22 446 0 3 24 0 768 29 0 3 28 chain 32612 chr11 135006516 + 83147167 83147618 LTR7 482 - 5 480 79834 109 1 0 90 0 32 131 19 13 89 2 1 10 chain 304088 chr11 135006516 + 83155441 83159226 HERVH-int 3825 - 0 3825 13240 89 4 9 54 0 6 232 26 27 319 0 3 423 0 3 376 0 1 376 19 1 14 0 16 1094 0 3 82 1 0 41 1 0 4 81 107 10 2 0 50 7 6 147 1 0 332 chain 3708 chr11 135006516 + 83186443 83186487 MIRb 242 - 106 150 211823 44 chain 10405 chr11 135006516 + 83210686 83210817 MLT2A1 477 + 253 385 158664 37 0 1 94 chain 31236 chr11 135006516 + 83214473 83214894 MLT2A1 477 - 32 477 82102 23 16 43 209 4 1 169 chain 274418 chr11 135006516 + 83214894 83218405 HERVL-int 5654 - 0 5654 14955 153 0 4 101 0 3 105 0 4 109 8 14 258 0 3 44 19 1 245 1 0 4 7 9 69 0 10 55 20 2 154 5 3 338 13 13 373 0 19 239 12 2124 117 0 4 110 12 23 45 0 1 192 1 2 55 1 0 204 0 2 6 4 5 35 0 1 330 1 0 66 chain 9077 chr11 135006516 + 83218670 83218774 HERVL-int 5654 - 3285 3389 165181 104 chain 29853 chr11 135006516 + 83218850 83219236 MLT2A1 477 - 94 477 85267 213 4 1 169 chain 532199 chr11 135006516 + 83223576 83229707 L1PA4 6152 - 0 6140 3938 339 0 1 240 1 0 91 0 1 50 0 4 1635 0 3 534 0 4 407 2 1 519 2 3 566 0 1 328 7 10 1223 21 0 44 12 26 110 chain 32193 chr11 135006516 + 83287966 83288360 MLT2A1 477 + 0 397 80535 142 0 1 26 0 4 208 6 4 12 chain 551312 chr11 135006516 + 83298691 83304699 L1PA2 6032 + 21 6031 1274 236 1 0 121 0 8 478 6 0 1601 0 1 3565 chain 6211 chr11 135006516 + 83319554 83319629 MER47A 366 - 198 273 183493 75 chain 27095 chr11 135006516 + 83331652 83331937 AluYa5 310 + 21 306 95958 285 chain 3848 chr11 135006516 + 83333277 83333346 MER45A 178 + 109 178 209675 15 6 7 21 1 0 26 chain 92993 chr11 135006516 + 83338252 83339301 L1PA4 6152 - 1 1044 38658 97 1 0 55 5 0 891 chain 30278 chr11 135006516 + 83350469 83350809 L1PA4 6152 + 5810 6152 84000 334 0 2 6 chain 4596 chr11 135006516 + 83360765 83360818 LTR33A_ 513 + 124 177 199682 53 chain 6649 chr11 135006516 + 83425777 83425854 L1PA6 6164 - 8 85 180100 77 chain 26183 chr11 135006516 + 83425854 83426171 L1PA7 6471 + 5860 6178 99267 204 4 5 68 1 0 18 0 1 22 chain 48866 chr11 135006516 + 83442201 83442859 L1PA8 5853 - 25 676 59830 68 1 0 19 2 1 52 1 0 9 1 0 69 2 0 38 0 3 5 4 0 42 1 0 44 0 1 300 chain 4915 chr11 135006516 + 83454999 83455102 LTR67B 553 + 54 119 196117 54 38 0 11 chain 80848 chr11 135006516 + 83456857 83457778 L1PA5 6144 + 5216 6142 43246 81 0 4 95 3 4 742 chain 2938 chr11 135006516 + 83486449 83486507 MIR 256 + 97 136 226352 8 19 0 31 chain 25315 chr11 135006516 + 83540791 83541087 L1PA5 6144 - 0 296 103145 296 chain 17288 chr11 135006516 + 83568247 83568528 L1PA13 3608 - 125 396 134813 15 1 0 20 8 4 37 18 15 18 0 1 11 1 0 89 2 0 61 chain 121323 chr11 135006516 + 83570222 83571785 THE1B-int 1605 + 17 1605 30589 249 1 0 166 0 29 169 15 9 298 0 1 129 6 7 473 0 1 57 chain 20705 chr11 135006516 + 83571798 83572111 THE1B 368 + 13 366 124948 31 11 26 102 4 3 97 4 22 12 3 11 49 chain 28433 chr11 135006516 + 83573084 83573695 L1MA3 4352 + 3679 4259 91454 86 0 2 68 13 11 181 2 0 21 185 160 23 0 3 1 7 0 24 chain 12163 chr11 135006516 + 83585590 83585726 L1PA4 6152 - 9 145 151562 136 chain 555498 chr11 135006516 + 83594998 83601166 L1PA3long 6157 + 1 6157 773 430 1 0 1009 1 0 879 0 1 2320 0 1 102 6 0 872 2 0 209 4 3 316 3 0 14 chain 2599 chr11 135006516 + 83652167 83652277 MER53 195 - 58 170 231700 19 64 65 22 0 1 5 chain 25879 chr11 135006516 + 83653912 83654244 THE1B 368 + 0 368 100532 40 0 15 117 1 0 20 2 0 21 0 24 131 chain 97337 chr11 135006516 + 83697104 83698170 L1PA3long 6157 - 0 1066 37472 1066 chain 60808 chr11 135006516 + 83698171 83698839 L1PA3long 6157 + 4427 5095 52425 668 chain 50779 chr11 135006516 + 83698881 83699683 L1PA11 4918 - 452 1468 58447 18 8 0 41 6 4 9 2 1 26 16 18 21 5 0 100 2 3 99 22 23 37 0 3 5 3 0 14 5 7 79 4 209 32 0 16 215 0 3 33 chain 48859 chr11 135006516 + 83727004 83727745 L1PA11 4918 - 340 1088 59832 11 2 0 13 1 0 15 13 9 10 19 9 15 1 2 6 1 0 16 2 0 66 1 0 12 8 7 56 1 0 127 0 29 345 chain 8153 chr11 135006516 + 83734660 83734791 Tigger2b_Pri 1066 + 60 189 170214 20 1 0 62 15 14 33 chain 175689 chr11 135006516 + 83750261 83752167 L1PA2 6032 - 0 1906 21376 1906 chain 59855 chr11 135006516 + 83761345 83762029 L1PA4 6152 - 780 1469 52850 64 0 4 269 0 1 351 chain 70016 chr11 135006516 + 83762029 83762823 L1PA4 6152 + 5353 6152 48385 648 0 1 140 0 4 6 chain 18456 chr11 135006516 + 83767122 83767399 L1PA8 5853 - 9 284 131626 84 1 0 19 4 3 37 0 1 13 2 0 8 1 0 54 13 15 41 chain 50022 chr11 135006516 + 83774589 83775160 L1PA5 6144 + 5567 6138 59001 571 chain 60671 chr11 135006516 + 83775892 83776733 L1PA15 4387 + 3301 4137 52484 512 24 22 53 2 0 44 1 0 121 5 6 46 1 0 9 0 1 15 1 0 7 chain 50572 chr11 135006516 + 83792562 83793163 L1PA6 6164 - 191 795 58601 98 0 7 322 4 0 177 chain 7946 chr11 135006516 + 83805014 83805101 L1PA2 6032 - 1 88 171349 87 chain 33428 chr11 135006516 + 83865557 83865937 L1PA5 6144 - 14 394 78517 380 chain 23030 chr11 135006516 + 83882490 83882805 L1PB4 2604 - 75 394 115491 35 4 5 65 0 5 39 2 0 170 chain 201096 chr11 135006516 + 83894631 83896874 L1PA4 6152 - 11 2261 19133 102 0 1 727 4 10 1410 chain 2536 chr11 135006516 + 83905677 83905727 LTR12D 1347 - 765 846 232699 15 2 0 6 5 38 22 chain 94091 chr11 135006516 + 83911562 83912786 L1PA11 4918 - 1309 2527 38324 73 1 0 303 5 6 63 0 1 212 2 3 184 0 1 48 2 0 175 9 2 147 chain 5389 chr11 135006516 + 83912787 83912850 L1PA11 4918 + 3610 3673 191094 63 chain 18124 chr11 135006516 + 83921380 83921587 L1PA2 6032 + 5820 6032 132532 192 1 6 14 chain 3962 chr11 135006516 + 83929781 83929889 MER20 218 + 39 148 207947 17 47 48 44 chain 7385 chr11 135006516 + 83944158 83944306 MER50 708 + 0 140 174873 43 33 21 36 8 12 28 chain 73334 chr11 135006516 + 83989970 83990887 L1PA7 6471 + 5416 6345 46868 52 0 5 148 1 0 82 0 1 66 4 8 19 0 4 508 6 0 7 0 5 24 chain 18549 chr11 135006516 + 83992490 83992691 L1PA3long 6157 - 4 205 131359 201 chain 21117 chr11 135006516 + 83995010 83995285 AluSp 311 + 9 290 123500 63 4 11 44 1 0 163 chain 9251 chr11 135006516 + 84003852 84004048 MER30 238 - 0 238 164302 15 1 2 31 3 0 26 6 0 6 0 6 30 4 16 32 27 59 15 chain 60706 chr11 135006516 + 84012300 84013392 L1PA7 6471 + 5685 6465 52470 15 1 4 92 311 2 44 13 3 461 10 11 129 0 6 7 3 0 6 chain 111618 chr11 135006516 + 84018447 84020143 LTR12C 1709 - 0 1709 33772 48 267 0 36 1 0 67 1 0 278 3 0 52 11 4 106 3 1 5 1 0 90 0 2 36 0 278 240 0 2 15 0 11 40 1 2 95 0 1 66 19 19 215 chain 21677 chr11 135006516 + 84018500 84018762 AluYk4 311 + 43 305 121484 262 chain 2454 chr11 135006516 + 84032713 84032825 MamRep1879 211 - 58 168 233673 7 1 0 23 5 0 6 54 58 16 chain 17172 chr11 135006516 + 84036265 84036486 L1PA6 6164 - 8 229 135103 119 0 1 25 1 0 76 chain 298557 chr11 135006516 + 84073554 84076858 L1PA3long 6157 - 0 3305 13501 1350 0 1 1031 1 0 512 6 7 404 chain 123299 chr11 135006516 + 84076858 84078246 L1HS 6032 + 1366 2754 29850 712 0 2 444 2 0 230 chain 9257 chr11 135006516 + 84119396 84119500 L1PA5 6144 - 7 111 164279 104 chain 28923 chr11 135006516 + 84131700 84132010 AluYa5 310 - 0 310 89361 310 chain 25765 chr11 135006516 + 84153372 84153742 L1PA7 6471 + 6103 6459 101022 28 0 1 16 0 7 153 13 11 105 22 1 26 0 1 7 chain 4368 chr11 135006516 + 84160762 84160813 MER113 458 - 84 135 202351 51 chain 28030 chr11 135006516 + 84217119 84217417 AluYa5 310 - 12 310 92892 298 chain 6573 chr11 135006516 + 84218570 84218644 L1P4 1494 - 1251 1325 180671 74 chain 27333 chr11 135006516 + 84223801 84224192 L1PA8 5853 + 5465 5853 95161 99 1 0 45 2 0 69 2 1 61 2 1 17 11 10 34 2 5 46 chain 12628 chr11 135006516 + 84235047 84235229 MER30 238 - 0 198 149735 39 3 0 71 4 22 48 0 1 17 chain 11820 chr11 135006516 + 84237594 84237817 MER44A 345 + 83 307 152946 8 2 0 10 0 2 57 5 11 47 33 28 61 chain 6457 chr11 135006516 + 84248574 84248655 L1MB2 1706 - 11 92 181577 81 chain 10279 chr11 135006516 + 84250629 84250746 L1PA5 6144 - 1524 1641 158841 117 chain 128775 chr11 135006516 + 84250746 84252230 L1PA5 6144 + 4629 6130 28369 138 0 16 511 6 5 146 1 2 24 0 1 658 chain 39723 chr11 135006516 + 84259325 84259786 L1PA4 6152 - 0 462 69724 65 0 2 80 2 0 187 0 1 127 chain 23416 chr11 135006516 + 84287938 84288266 THE1A 353 + 0 329 113561 80 3 5 44 1 2 11 1 0 56 1 0 131 chain 24280 chr11 135006516 + 84289860 84290203 THE1A 353 + 0 341 108774 110 1 0 69 20 19 143 chain 29176 chr11 135006516 + 84295720 84296030 AluYa5 310 - 0 310 88177 310 chain 30369 chr11 135006516 + 84299591 84300023 MER41A 554 + 0 554 83742 212 38 161 4 1 0 177 chain 89744 chr11 135006516 + 84303418 84304851 L1PA7 6471 + 5368 6468 39741 253 1 0 77 0 2 98 329 0 143 2 3 153 0 1 58 4 0 305 3 0 7 chain 55495 chr11 135006516 + 84328029 84328703 L1PA7 6471 - 1 678 55418 668 0 3 6 chain 28212 chr11 135006516 + 84335900 84336202 AluYa5 310 - 11 310 92264 124 3 0 175 chain 12874 chr11 135006516 + 84368591 84368748 MER1B 344 - 91 248 148733 157 chain 10400 chr11 135006516 + 84377182 84377580 MLT2B4 540 + 86 532 158698 10 14 0 16 5 0 85 163 270 35 46 6 24 chain 278863 chr11 135006516 + 84437169 84440621 L1PA7 6471 - 10 3502 14701 139 0 1 174 10 11 375 0 10 47 0 1 81 2 8 202 0 2 246 7 8 160 7 6 43 3 0 108 7 8 162 0 4 141 0 4 972 0 4 143 0 1 75 1 3 94 0 5 36 0 1 217 chain 273652 chr11 135006516 + 84443697 84446846 L1PA5 6144 - 9 3168 14990 9 1 0 37 0 1 92 1 4 697 1 5 45 1 0 4 1 2 867 0 1 862 0 1 284 1 0 15 0 2 231 chain 28304 chr11 135006516 + 84452099 84452396 AluYd8 298 - 1 298 91929 297 chain 22627 chr11 135006516 + 84454784 84455066 AluSg4 309 - 8 309 117442 28 0 20 122 1 0 131 chain 39787 chr11 135006516 + 84463610 84464037 L1PA2 6032 - 0 427 69645 427 chain 12057 chr11 135006516 + 84467742 84467919 MER30 238 + 59 238 151958 48 4 0 8 2 11 70 3 0 42 chain 5160 chr11 135006516 + 84468282 84468438 MER5C 305 + 88 243 193445 34 82 81 40 chain 22078 chr11 135006516 + 84471768 84472139 LTR1B 797 + 0 545 119893 42 6 168 36 55 69 45 2 0 28 1 0 106 0 1 50 chain 69686 chr11 135006516 + 84500951 84501986 L1MA2 4263 - 175 1195 48529 21 16 9 93 11 9 99 2 1 6 11 0 7 0 12 25 3 0 8 14 16 5 2 0 115 1 0 77 16 14 503 chain 20492 chr11 135006516 + 84547920 84548147 L1PA4 6152 - 16 243 125651 227 chain 195982 chr11 135006516 + 84549715 84552041 L1PA6 6164 + 3832 6162 19503 1027 0 4 340 0 1 391 4 3 382 0 1 61 0 1 112 2 0 7 chain 84504 chr11 135006516 + 84572583 84574025 L1PA7 6471 + 5414 6464 41714 83 32 9 39 1 2 170 363 0 421 5 6 164 6 0 103 0 1 47 3 0 5 chain 29758 chr11 135006516 + 84572911 84573239 L1PA3long 6157 + 5828 6156 85623 328 chain 122523 chr11 135006516 + 84587274 84588770 L1P3 4156 - 235 1720 30212 84 4 5 230 0 1 439 5 3 354 3 4 172 14 1 113 0 1 78 chain 80981 chr11 135006516 + 84588770 84589746 L1PA7 6471 + 5470 6457 43038 151 0 3 126 0 1 292 7 12 76 0 1 256 0 1 68 chain 41220 chr11 135006516 + 84593974 84594514 L1PA8 5853 + 5315 5853 67622 249 1 0 45 2 0 60 21 19 52 2 1 19 1 0 32 0 1 47 0 4 9 chain 3084 chr11 135006516 + 84610941 84611017 MER135 159 - 31 106 223259 17 29 28 30 chain 57509 chr11 135006516 + 84643457 84644200 L1PA8A 6298 - 8 754 54233 104 6 7 178 1 0 29 9 5 20 0 4 139 1 0 204 0 4 52 chain 7982 chr11 135006516 + 84645669 84645766 L1PA8A 6298 + 3546 3643 171159 97 chain 73727 chr11 135006516 + 84660092 84661130 MER11C 1089 - 26 1089 46658 25 0 1 117 1 0 54 0 1 73 16 0 46 0 35 9 1 0 7 1 5 91 52 42 171 1 0 65 0 4 59 7 16 242 chain 24718 chr11 135006516 + 84663307 84663571 AluYd8 298 + 0 280 106343 52 0 16 212 chain 38586 chr11 135006516 + 84680750 84681220 L1PA7 6471 + 5994 6467 71312 15 0 4 125 0 1 320 2 0 8 chain 130962 chr11 135006516 + 84689301 84690848 L1PA5 6144 + 4581 6132 27871 240 17 11 173 0 1 281 0 4 31 0 1 180 0 2 5 2 0 16 9 12 352 0 1 103 0 1 35 2 1 101 chain 384161 chr11 135006516 + 84694310 84699903 L1PB1 5432 + 77 5420 10638 161 0 1 22 3 0 15 11 9 60 1 0 57 1 0 47 3 7 88 5 2 219 3 10 25 17 0 270 0 28 299 1 0 12 5 0 129 3 11 26 0 2 197 0 2 87 22 28 79 0 2 431 10 9 134 326 0 46 1 0 120 0 3 111 0 14 106 0 12 196 6 19 554 2 5 45 1 0 98 7 0 56 1 4 6 3 0 26 0 1 513 16 17 48 1 0 81 3 28 155 1 6 63 6 7 9 0 23 183 16 7 6 1 0 24 1 0 9 1 0 6 10 6 8 2 0 53 16 16 41 89 69 24 1 0 21 1 0 11 5 4 14 chain 24142 chr11 135006516 + 84703591 84703890 L1PA8 5853 - 650 952 109510 194 0 2 11 8 9 86 chain 40986 chr11 135006516 + 84703890 84705081 L1PA8 5853 + 5265 5853 67925 299 0 12 34 4 2 66 2 1 11 1 0 25 11 12 13 2 1 19 2 1 7 610 0 85 chain 252591 chr11 135006516 + 84714770 84717935 L1PA7 6471 - 4 3163 16100 142 1 0 4 6 8 278 11 12 399 1 4 124 9 0 305 1 0 678 0 1 104 1 0 25 0 1 61 0 3 309 1 0 5 2 0 253 15 16 137 0 1 63 1 0 11 22 20 109 1 0 86 chain 95490 chr11 135006516 + 84730516 84731671 L1PA5 6144 - 1 1166 37959 141 0 2 8 2 0 19 1 2 165 0 1 435 0 1 71 1 5 130 4 7 178 chain 9748 chr11 135006516 + 84731677 84731785 L1PA5 6144 + 4843 4951 161853 108 chain 4130 chr11 135006516 + 84760512 84760598 MER20 218 - 22 124 205497 12 14 0 6 5 35 49 chain 3148 chr11 135006516 + 84771249 84771286 L1MB1 2102 - 111 148 221958 37 chain 41678 chr11 135006516 + 84778134 84778607 L1PA4 6152 - 2743 3221 66821 42 0 5 431 chain 241644 chr11 135006516 + 84778607 84781348 L1PA4 6152 + 3415 6143 16688 163 15 0 464 0 1 1995 0 1 104 chain 3909 chr11 135006516 + 84781407 84781453 L1PB4 2604 + 2297 2343 208719 46 chain 30103 chr11 135006516 + 84798600 84798913 AluYb8 318 + 0 313 84478 313 chain 11483 chr11 135006516 + 84804421 84805032 Ricksha_b 1102 - 729 981 154363 70 1 0 6 0 1 14 414 55 27 0 1 8 0 3 39 5 0 8 6 7 13 chain 55676 chr11 135006516 + 84806957 84807671 LTR12 884 + 0 869 55325 54 0 41 113 9 50 16 5 72 30 2 0 368 7 15 110 chain 49534 chr11 135006516 + 84807762 84808405 HERV9-int 5642 + 0 654 59364 177 4 22 241 21 14 200 chain 4800 chr11 135006516 + 84808405 84808459 LTR12_ 688 - 634 688 197359 54 chain 5840 chr11 135006516 + 84840522 84840584 L1PA7 6471 - 682 744 186765 62 chain 54493 chr11 135006516 + 84840592 84841258 L1PA7 6471 + 5787 6465 56030 27 0 11 46 0 4 583 3 0 7 chain 25598 chr11 135006516 + 84845329 84845597 AluYa5 310 + 38 306 101738 268 chain 15060 chr11 135006516 + 84860226 84860435 L1PA10 4194 - 33 238 141141 11 1 0 34 6 4 30 1 0 126 chain 28402 chr11 135006516 + 84867932 84868328 MLT2A1 477 + 0 397 91571 87 1 2 79 5 2 163 5 6 40 3 5 13 chain 430350 chr11 135006516 + 84868337 84873863 HERVL-int 5654 + 25 5654 9302 449 0 63 106 7 6 63 1 9 150 17 18 221 7 8 16 10 14 157 0 1 138 2 0 280 0 2 136 0 1 212 3 14 125 1 2 282 0 5 540 0 9 574 0 3 36 1 0 13 14 11 43 5 6 205 0 2 146 0 2 99 4 0 231 0 2 111 1 4 278 1 2 79 1 4 17 0 7 123 6 5 168 41 7 75 8 26 323 chain 28841 chr11 135006516 + 84873863 84874249 MLT2A1 477 + 0 393 89718 158 0 1 10 4 1 145 0 13 57 4 0 8 chain 2854 chr11 135006516 + 84914162 84914209 MADE1 96 + 48 96 227797 22 4 5 21 chain 75680 chr11 135006516 + 84940263 84941169 L1PA7 6471 + 5537 6456 45666 85 0 2 512 0 1 64 0 1 31 2 11 212 chain 2819 chr11 135006516 + 84948487 84948576 Tigger2a 444 - 0 95 228490 17 27 31 14 8 10 23 chain 19275 chr11 135006516 + 84963388 84963651 AluSc8 310 + 38 306 129309 68 1 3 20 14 17 160 chain 51044 chr11 135006516 + 84973262 84973918 PABL_A 660 + 0 660 58284 175 0 1 50 0 1 276 1 0 73 11 13 55 0 1 15 chain 20546 chr11 135006516 + 84977409 84977663 L1PA7 6471 + 6216 6468 125483 243 2 0 9 chain 23788 chr11 135006516 + 84981157 84981508 THE1B 368 + 8 368 111545 161 2 1 18 10 7 6 0 1 12 19 31 123 chain 25684 chr11 135006516 + 84983051 84983407 THE1B 368 + 0 368 101360 169 1 0 29 14 16 14 10 21 119 chain 146819 chr11 135006516 + 84983619 84985305 L1PA5 6144 + 4452 6141 25043 154 0 2 1363 5 6 164 chain 566945 chr11 135006516 + 85035802 85041834 L1HS 6032 + 0 6032 92 6032 chain 19494 chr11 135006516 + 85046746 85046997 L1PA7 6471 + 6218 6468 128669 55 9 5 6 0 3 181 chain 77147 chr11 135006516 + 85050794 85051680 L1PA6 6164 + 5266 6152 44885 740 1 0 4 0 1 141 chain 20014 chr11 135006516 + 85056985 85057223 MER41C 542 - 14 276 127101 198 0 24 40 chain 13499 chr11 135006516 + 85060004 85060201 MER4D1 891 + 0 199 146364 30 0 1 43 16 17 108 chain 268921 chr11 135006516 + 85060466 85063640 L1PA6 6164 - 8 3192 15236 831 3 7 1008 6 5 335 0 2 778 0 1 4 1 2 90 0 1 24 4 6 90 chain 121090 chr11 135006516 + 85063640 85065039 L1PA6 6164 + 4763 6162 30614 1399 chain 49550 chr11 135006516 + 85076548 85077129 L1PA7 6471 + 5881 6468 59356 477 0 6 104 chain 269790 chr11 135006516 + 85080820 85084545 MER61-int 3695 + 1 3689 15190 46 1 0 32 3 7 19 2 0 89 39 0 77 2 1 21 8 3 114 2 3 124 7 6 99 2 0 395 19 2 187 0 3 21 0 1 372 0 5 278 1 4 273 0 3 358 0 3 21 18 19 28 1 0 12 7 8 130 1 0 98 1 0 39 1 0 15 0 1 272 0 2 91 13 1 8 0 13 42 2 0 160 57 66 4 1 0 112 chain 183868 chr11 135006516 + 85109962 85111986 L1PA3long 6157 + 4133 6157 20602 2024 chain 211821 chr11 135006516 + 85111995 85114541 L1PA6 6164 + 3618 6162 18371 78 3 0 786 1 0 159 3 2 344 0 1 955 0 1 31 1 0 4 1 2 22 7 8 151 chain 50123 chr11 135006516 + 85119457 85120005 L1PA3long 6157 - 15 563 58927 548 chain 127009 chr11 135006516 + 85123830 85125494 L1PB1 5432 - 329 2008 28814 275 15 23 11 8 1 83 3 4 81 1 2 8 1 5 439 0 4 193 1 0 4 0 1 5 0 2 229 11 13 296 chain 509616 chr11 135006516 + 85125915 85132448 L1PA7 6471 - 10 6471 6197 329 0 1 465 1 2 36 0 7 121 34 15 140 1 0 170 70 0 887 1 0 666 6 9 75 3 8 27 1 0 223 17 12 250 0 1 334 0 12 258 6 15 14 0 1 103 1 0 243 1 0 161 6 0 568 0 2 368 0 3 77 0 1 51 1 0 157 5 1 238 67 39 23 2 1 160 4 25 162 chain 409074 chr11 135006516 + 85136695 85141398 L1PA4 6152 + 0 6143 9832 580 1 11 915 0 1 2095 0 3 109 0 1417 70 0 1 100 0 2 594 1 0 97 0 7 141 chain 367147 chr11 135006516 + 85142772 85148359 L1PA8 5853 + 272 5853 11183 5 0 1 14 123 108 64 13 14 42 85 66 52 48 50 68 1 2 8 1 0 121 12 15 18 12 0 114 8 7 54 17 33 24 0 4 10 57 53 14 0 3 387 7 8 103 0 1 171 0 2 122 12 9 495 5 0 111 16 17 245 2 1 11 15 14 13 0 1 340 5 7 13 25 26 270 0 6 169 1 0 62 1 7 44 1 0 227 17 16 5 0 2 432 0 3 5 15 12 27 0 1 44 0 1 224 18 19 101 11 9 65 0 2 8 14 15 61 47 51 157 5 6 9 0 2 169 2 1 43 4 2 58 32 31 41 2 1 19 1 0 93 chain 4299 chr11 135006516 + 85149524 85149571 MADE1 96 + 48 95 203216 47 chain 90244 chr11 135006516 + 85172811 85173845 L1PA4 6152 + 5105 6141 39560 198 0 2 836 chain 308039 chr11 135006516 + 85176355 85179862 L1PA4 6152 - 0 3509 13083 6 0 5 869 5 1 237 0 1 722 0 1 1024 2 1 642 chain 100622 chr11 135006516 + 85195302 85196405 L1PA3long 6157 + 5053 6156 36600 1103 chain 9600 chr11 135006516 + 85199466 85199595 THE1A 353 + 223 342 162598 58 10 0 61 chain 3912 chr11 135006516 + 85203724 85203769 Helitron3Na_Mam 445 + 63 108 208681 45 chain 438934 chr11 135006516 + 85207009 85213467 L1PA7 6471 + 37 6461 9084 125 50 49 22 141 338 99 0 1 5 51 61 43 14 89 175 5 26 473 6 7 171 17 18 296 1 0 605 0 1 421 1 0 10 17 18 58 31 17 64 0 4 142 11 3 104 5 4 63 11 15 165 11 12 268 13 12 70 0 2 5 2 0 349 0 1 165 330 3 13 5 6 39 0 4 942 2 1 6 0 1 202 0 1 467 11 12 81 12 7 63 chain 27643 chr11 135006516 + 85211303 85211598 L1HS 6032 + 5737 6032 94229 295 chain 7959 chr11 135006516 + 85213471 85213564 L1PA8 5853 + 5470 5564 171278 50 0 1 43 chain 22651 chr11 135006516 + 85213565 85213860 L1PA8 5853 + 5564 5853 117314 45 2 0 71 1 0 10 1 0 50 2 1 19 1 0 93 chain 337077 chr11 135006516 + 85215233 85219283 L1P2 5180 - 2 4060 11970 4 1 0 38 1 0 47 1 0 588 2 3 159 8 0 415 0 1 39 0 1 85 0 3 5 3 0 554 0 4 381 4 3 454 0 4 42 0 2 26 0 1 573 1 5 202 0 1 161 15 16 241 chain 96842 chr11 135006516 + 85221344 85222426 L1PA4 6152 + 5070 6151 37599 231 2 0 88 0 1 611 2 0 5 1 3 142 chain 5693 chr11 135006516 + 85237670 85237788 MLT2B1 522 + 7 126 188177 18 42 43 58 chain 95870 chr11 135006516 + 85238236 85239460 L1PA8 5853 - 0 1227 37853 93 1 0 19 2 1 51 1 0 10 1 0 12 0 1 4 1 0 52 2 0 46 1 0 490 0 12 5 0 1 46 2 0 287 1 0 97 chain 6759 chr11 135006516 + 85249191 85249271 LTR12D 1347 + 1267 1347 179257 80 chain 512420 chr11 135006516 + 85254035 85260483 L1PA7 6471 - 3 6471 5933 154 6 7 633 0 1 4 1 0 46 3 0 213 1 0 234 2 1 503 21 25 31 6 5 341 0 1 62 1 2 514 1 0 85 1 0 443 2 1 250 0 1 258 2 3 9 13 0 119 0 1 184 4 14 158 5 10 67 0 1 70 1 5 516 0 1 145 0 1 4 1 0 442 14 14 99 0 1 37 1 0 242 12 13 191 7 6 37 7 17 30 11 12 204 chain 39145 chr11 135006516 + 85260587 85261138 MER41B 635 + 1 558 70546 100 2 6 14 4 8 175 1 0 126 0 19 8 31 11 90 chain 26625 chr11 135006516 + 85290953 85291316 THE1B 368 + 0 368 97574 169 1 0 21 4 2 109 0 1 4 6 13 49 chain 81766 chr11 135006516 + 85295112 85296407 L1PB1 5432 - 48 1315 42863 14 3 2 18 122 130 51 3 1 9 5 1 13 1 0 31 45 11 38 14 15 234 13 21 167 3 0 511 chain 58169 chr11 135006516 + 85317330 85318059 LTR12 884 + 0 861 53891 20 0 1 110 0 91 44 14 55 16 0 1 39 2 0 484 chain 399693 chr11 135006516 + 85318126 85322907 HERV9-int 5642 + 0 4815 10105 323 5 7 40 5 14 10 0 1 393 4 3 312 1 0 5 1 3 166 6 0 1745 1 2 931 0 1 96 2 1 6 0 1 250 3 5 6 2 0 45 0 1 14 0 2 53 0 23 356 chain 53027 chr11 135006516 + 85324509 85325196 LTR12 884 + 0 842 56999 128 3 160 74 16 14 466 chain 74824 chr11 135006516 + 85343848 85344667 L1PA3long 6157 - 0 819 46099 819 chain 16555 chr11 135006516 + 85382099 85382412 THE1B 368 - 43 361 136782 13 1 2 4 1 0 66 68 72 48 10 11 102 chain 91826 chr11 135006516 + 85382426 85383629 THE1B-int 1605 - 7 1294 39018 67 0 14 374 0 4 427 1 2 196 17 16 26 9 75 86 chain 315052 chr11 135006516 + 85440010 85443783 L1PA7 6471 + 2683 6457 12804 12 0 1 824 7 1 51 0 4 1091 1 9 279 1 4 353 3 4 285 16 0 13 0 4 82 0 2 185 0 1 381 10 9 179 chain 30262 chr11 135006516 + 85444624 85444941 AluYb8 318 - 1 318 84029 317 chain 45362 chr11 135006516 + 85487305 85487868 L1PA7 6471 - 5 575 62644 11 0 4 60 0 3 257 2 1 14 0 1 219 chain 28971 chr11 135006516 + 85492120 85492482 THE1C 375 - 17 375 89129 9 1 0 226 3 0 123 chain 69888 chr11 135006516 + 85503673 85504435 L1PA3long 6157 - 0 762 48444 762 chain 25001 chr11 135006516 + 85536187 85536447 AluYa5 310 + 38 298 104784 260 chain 36860 chr11 135006516 + 85540232 85540843 L1PA16 3655 - 36 657 73720 16 40 20 6 3 0 64 12 40 163 30 28 19 5 4 4 0 1 50 1 0 116 0 8 82 chain 4003 chr11 135006516 + 85548972 85549081 MER20 218 - 78 137 207348 36 51 1 22 chain 17545 chr11 135006516 + 85551148 85551469 L1MA1 4479 - 289 591 134139 16 1 0 2 5 0 13 22 16 36 2 0 16 21 20 115 13 9 59 chain 108662 chr11 135006516 + 85560187 85561362 L1PA2 6032 - 856 2035 34522 390 0 4 785 chain 79371 chr11 135006516 + 85561362 85562229 L1PA2 6032 + 5162 6029 43717 867 chain 114656 chr11 135006516 + 85563403 85564718 SVA_C 1631 + 20 1629 32898 195 1 0 19 0 1 201 0 116 273 0 179 219 1 0 406 chain 10808 chr11 135006516 + 85591836 85591988 Tigger4b 360 - 22 173 156955 25 13 12 114 chain 13406 chr11 135006516 + 85605037 85605235 MER1A 529 + 327 528 146687 88 1 6 36 17 15 56 chain 537543 chr11 135006516 + 85635377 85641932 L1PA7 6471 + 0 6430 3228 203 0 22 186 0 1 375 7 0 606 0 3 52 1 0 305 1 0 50 1 35 603 0 4 187 16 0 865 178 8 91 0 1 164 0 3 238 0 3 304 0 1 197 0 1 168 0 4 138 5 1 136 3 0 416 0 1 249 0 3 79 4 0 337 0 1 280 1 0 109 chain 46968 chr11 135006516 + 85641964 85642534 LTR22 571 - 0 571 61233 125 5 6 157 0 1 200 1 0 82 chain 33784 chr11 135006516 + 85645656 85647681 MER4A1 472 - 0 472 77965 47 1581 0 79 0 2 98 0 21 21 0 1 101 0 2 67 1 0 11 0 1 4 0 2 15 chain 107996 chr11 135006516 + 85663055 85664259 L1PA4 6152 - 1 1208 34717 366 1 0 483 0 4 354 chain 23153 chr11 135006516 + 85670402 85670699 AluSq2 311 + 14 307 114881 57 0 3 10 11 3 46 0 1 173 chain 28538 chr11 135006516 + 85693466 85693769 AluYb8 318 - 15 318 91011 303 chain 30043 chr11 135006516 + 85697414 85697732 AluYb8 318 - 0 318 84673 318 chain 17932 chr11 135006516 + 85763094 85763436 THE1C 375 + 6 375 133028 7 2 0 34 60 69 61 34 54 144 chain 189703 chr11 135006516 + 85815549 85817616 L1PA3long 6157 + 4089 6157 20084 1918 0 1 149 chain 7762 chr11 135006516 + 85820832 85820936 SVA_C 1631 + 6 104 172532 4 1 0 6 3 0 11 1 0 9 1 0 68 chain 180866 chr11 135006516 + 85820948 85823178 SVA_D 2077 + 0 2073 20912 13 1 0 6 8 0 9 0 11 857 14 18 8 0 1 24 11 0 39 0 1 52 31 0 47 0 3 92 49 0 38 0 1 168 0 1 4 87 8 672 chain 1902 chr11 135006516 + 85822160 85822187 SVA_D 2077 + 1533 1559 113324 9 1 0 17 chain 8204 chr11 135006516 + 85822419 85822506 SVA_D 2077 + 1089 1176 98787 87 chain 5250 chr11 135006516 + 85823432 85823495 L1MA5A 2387 - 94 157 192519 63 chain 7489 chr11 135006516 + 85839417 85839504 L1PA5 6144 - 0 87 174209 87 chain 25745 chr11 135006516 + 85842890 85843200 AluSp 311 - 0 311 101102 155 0 1 155 chain 8322 chr11 135006516 + 85864269 85864373 U6 107 + 1 104 169268 29 1 0 74 chain 32746 chr11 135006516 + 85934809 85935418 L1PA13 3608 + 2972 3548 79618 153 28 16 17 0 2 72 0 3 5 1 3 30 2 0 62 1 0 27 1 0 34 2 0 27 0 1 12 62 54 14 5 0 14 28 18 12 chain 3109 chr11 135006516 + 85944240 85944280 MER121 330 + 126 168 222764 6 0 2 34 chain 3727 chr11 135006516 + 85974490 85974534 MSTD 398 - 0 44 211513 44 chain 26996 chr11 135006516 + 85997740 85998040 AluYk4 311 + 8 308 96299 300 chain 3215 chr11 135006516 + 86002078 86002172 MER53 195 - 28 147 220659 4 1 0 23 21 46 21 7 8 17 chain 393799 chr11 135006516 + 86019630 86024110 L1PA5 6144 - 17 4513 10330 613 0 1 219 1 0 524 0 5 523 0 1 26 0 3 324 0 1 217 0 2 461 0 1 959 0 2 216 1 2 396 chain 3413 chr11 135006516 + 86032305 86032357 L1ME1 1623 - 138 184 216881 37 6 0 9 chain 22357 chr11 135006516 + 86039469 86039773 AluSg7 307 - 5 297 118679 65 22 9 101 0 1 116 chain 75775 chr11 135006516 + 86050792 86051690 L1PA6 6164 - 2 898 45607 157 18 13 373 1 0 303 0 4 46 chain 4476 chr11 135006516 + 86053570 86053619 AluJr 308 - 197 246 201049 49 chain 8605 chr11 135006516 + 86060759 86060884 L1MB8 1703 - 139 266 167701 38 6 8 81 chain 32584 chr11 135006516 + 86062301 86062653 L1PA4 6152 - 532 884 79883 352 chain 44465 chr11 135006516 + 86062653 86063153 L1PA4 6152 + 5651 6151 63618 500 chain 5818 chr11 135006516 + 86066075 86066166 L1MB3 1562 + 1201 1292 186975 40 8 7 36 0 1 7 chain 38851 chr11 135006516 + 86067646 86068177 MER41A 554 + 0 554 70946 43 13 28 197 5 8 192 11 16 70 chain 39763 chr11 135006516 + 86069461 86069971 MER41C 542 - 11 542 69672 131 5 4 65 1 22 259 0 1 49 chain 76415 chr11 135006516 + 86076827 86077746 L1P1 4361 + 3403 4328 45255 279 0 1 268 0 1 26 1 0 169 2 1 63 4 7 81 3 6 23 chain 25918 chr11 135006516 + 86102803 86103203 MSTA 426 - 10 426 100342 91 8 29 39 57 53 75 1 0 129 chain 48033 chr11 135006516 + 86134539 86135088 LTR6B 557 + 0 557 60456 50 1 0 124 0 8 172 0 1 202 chain 124509 chr11 135006516 + 86143620 86145128 LTR12C 1709 - 0 1709 29540 74 1 0 8 1 0 399 20 13 88 0 47 166 7 168 280 0 2 464 chain 6421 chr11 135006516 + 86202791 86202985 MER53 195 - 5 195 181851 55 104 100 35 chain 25990 chr11 135006516 + 86224973 86225360 THE1D 372 + 0 372 100053 9 0 2 65 19 0 90 24 26 180 chain 22623 chr11 135006516 + 86232149 86232437 AluY 311 + 0 283 117468 64 4 0 42 13 12 165 chain 27392 chr11 135006516 + 86233424 86233852 L1PA8 5853 - 11 427 94996 25 1 6 50 2 1 19 2 1 46 10 0 4 1 0 11 12 11 16 0 2 5 8 6 31 2 0 44 1 0 138 chain 10726 chr11 135006516 + 86233853 86234007 MER2 342 + 145 301 157295 70 15 17 69 chain 531140 chr11 135006516 + 86236924 86243024 L1PA4 6152 + 0 6152 4064 660 0 1 237 0 1 75 1 2 646 0 9 255 0 1 1308 6 7 7 1 0 707 5 8 295 0 3 129 0 4 700 0 1 825 4 27 233 0 5 6 chain 102849 chr11 135006516 + 86247220 86248337 L1PA2 6032 + 4911 6028 36039 1117 chain 7300 chr11 135006516 + 86250847 86250946 MER30 238 - 4 100 175450 37 3 0 59 chain 5773 chr11 135006516 + 86251416 86251511 LTR32 486 + 369 476 187414 17 14 26 64 chain 537709 chr11 135006516 + 86251883 86258681 L1PA7 6471 + 0 6468 3204 403 1 0 30 2 0 3 5 0 8 0 2 556 5 0 589 0 1 101 0 1 105 0 1 839 0 2 93 6 5 605 1 2 138 13 13 241 3 0 320 17 2 197 0 1 30 3 7 245 1 2 134 1 5 210 0 1 279 1 0 271 0 1 139 2 1 34 7 6 471 315 0 42 5 6 169 1 0 157 chain 172758 chr11 135006516 + 86283335 86285679 L1PA8 5853 - 13 5411 21737 80 1 0 19 3 2 40 31 29 25 3 5 32 2 0 44 1 0 35 5 8 463 0 1 48 2 0 304 8 658 613 4 2432 259 0 1 78 53 31 191 chain 24970 chr11 135006516 + 86302621 86302970 THE1B 368 - 0 368 104958 112 5 9 53 8 10 16 2 0 113 0 15 40 chain 6834 chr11 135006516 + 86302981 86303067 MLT1B 390 + 304 390 178698 86 chain 550149 chr11 135006516 + 86309001 86315147 L1PA3long 6157 + 0 6157 1429 250 6 5 452 0 1 1197 0 3 187 4 0 224 0 1 2460 0 5 280 0 2 473 0 4 613 chain 110884 chr11 135006516 + 86323009 86324312 L1PA8A 6298 - 9 1320 33972 134 0 2 660 1 4 324 0 2 102 0 1 82 chain 71982 chr11 135006516 + 86324312 86325165 L1PA8A 6298 + 4129 4982 47407 202 0 1 209 0 1 283 2 0 157 chain 4467 chr11 135006516 + 86346436 86346494 MLT1B 390 + 293 368 201150 27 0 17 31 chain 227817 chr11 135006516 + 86355808 86361653 L1PA7 6471 + 3 5613 6762 713 0 9 14 0 4 712 0 3 745 0 1 339 215 12 117 2 1 250 1 0 346 67 0 215 20 13 20 1 0 33 38 39 120 0 1 5 3 1 32 15 29 58 0 1 104 8 12 150 3 0 8 7 10 124 0 2 430 0 4 73 0 1 133 0 2 724 chain 538811 chr11 135006516 + 86361661 86367801 L1PA4 6152 + 11 6152 3025 994 6 5 252 0 1 472 0 1 5 1 0 4071 0 1 339 chain 33130 chr11 135006516 + 86367821 86368671 L1PA7 6471 + 5625 6470 6762 78 4 0 606 2 0 140 1 2 19 chain 3403 chr11 135006516 + 86405675 86405718 MIRb 242 - 104 147 217014 43 chain 5008 chr11 135006516 + 86428181 86428247 L1MB3 1562 + 1438 1503 195042 30 1 0 35 chain 8364 chr11 135006516 + 86436925 86437106 L1PB1 5432 + 5251 5409 169053 30 1 0 15 3 0 6 17 6 19 17 14 5 2 0 24 1 0 21 1 0 13 1 0 5 chain 104253 chr11 135006516 + 86440501 86441756 L1PA7 6471 - 10 1264 35675 836 0 1 4 2 0 115 3 4 203 2 1 90 chain 144152 chr11 135006516 + 86442570 86444193 SVA_D 2077 + 0 2077 25452 23 3 0 541 0 1 325 0 396 28 0 1 37 0 49 365 1 0 98 0 13 193 2 0 7 chain 2820 chr11 135006516 + 86463005 86463035 MIRb 242 - 101 131 228454 30 chain 125410 chr11 135006516 + 86466833 86468190 L1PA2 6032 - 4 1361 29275 1357 chain 57271 chr11 135006516 + 86468191 86468804 L1PA2 6032 + 4092 4705 54354 613 chain 117020 chr11 135006516 + 86481237 86482561 SVA_C 1631 - 17 1625 32117 427 0 1 73 0 256 132 3 0 42 0 37 589 12 0 36 0 1 4 0 4 6 chain 555660 chr11 135006516 + 86535523 86541678 L1PA3long 6157 - 0 6151 755 1486 0 1 288 12 0 2790 0 1 398 1 4 19 0 3 1161 chain 26760 chr11 135006516 + 86544537 86544850 LTR17 781 - 459 781 97124 195 0 9 118 chain 225346 chr11 135006516 + 86545164 86547860 HERV17-int 4347 - 0 2609 17568 273 1 0 6 0 1 15 0 1 77 120 33 1703 2 1 499 chain 479421 chr11 135006516 + 86548859 86555461 L1PA6 6164 + 4 6162 7748 236 204 24 130 16 17 5 1 0 33 8 0 118 4 3 237 0 17 120 6 0 121 0 2 5 10 1 279 0 38 45 1 6 14 11 12 260 0 1 333 0 1 265 15 0 200 0 6 37 0 1 507 0 1 10 331 0 42 8 12 28 1 0 66 3 7 33 0 1 4 2 1 75 0 2 32 0 1 819 0 4 143 1 9 246 11 12 689 1 7 199 0 1 15 10 11 387 0 2 225 chain 53460 chr11 135006516 + 86556583 86557277 LTR30 714 + 0 714 56714 71 1 0 81 1 0 33 3 1 30 6 14 19 0 5 319 6 17 124 chain 44178 chr11 135006516 + 86557912 86559264 HERV30-int 1034 + 137 905 63975 10 24 0 13 7 1 39 1 0 61 34 5 46 1 0 3 4 0 38 13 1 75 2 1 91 15 0 41 34 0 19 8 5 6 2 0 33 59 7 15 120 39 49 39 0 24 52 0 27 47 0 19 56 4 13 7 5 16 11 0 25 83 0 17 33 0 20 chain 50999 chr11 135006516 + 86561460 86562092 LTR30 714 + 0 714 58310 71 5 4 45 4 0 104 0 8 17 0 5 340 0 74 46 chain 7151 chr11 135006516 + 86564608 86564751 L1MB3 1562 - 299 441 176397 31 42 41 70 chain 3852 chr11 135006516 + 86585336 86585442 MER53 195 - 0 102 209616 37 6 0 17 33 35 13 chain 167332 chr11 135006516 + 86589267 86591501 SVA_D 2077 + 0 2076 22354 21 3 0 540 320 0 337 14 100 36 1 2 7 0 1 187 0 78 79 0 1 4 9 8 43 1 0 632 chain 2731 chr11 135006516 + 86589932 86590120 SVA_D 2077 + 542 650 154857 33 126 46 29 chain 2839 chr11 135006516 + 86590040 86590072 SVA_D 2077 + 454 486 228087 32 chain 25936 chr11 135006516 + 86591539 86591895 L1PA8 5853 - 0 354 100270 93 1 0 19 0 3 47 5 4 10 0 1 68 5 3 43 1 0 45 1 0 18 chain 4212 chr11 135006516 + 86605390 86605444 LTR37A 408 - 288 342 204404 54 chain 2797 chr11 135006516 + 86615640 86615748 MER58B 340 - 8 112 228789 19 63 59 26 chain 23142 chr11 135006516 + 86619019 86619373 L1MB1 2102 - 98 469 114928 5 0 3 54 2 0 67 1 0 6 4 16 63 0 12 23 2 1 7 1 0 10 10 5 99 chain 43555 chr11 135006516 + 86648406 86648942 MER41A 554 + 0 554 64736 92 0 1 37 0 1 187 0 1 75 1 11 63 0 5 81 chain 417992 chr11 135006516 + 86674100 86679265 L1P2 5180 - 2 5178 9586 4 1 0 87 1 0 65 1 0 553 2 0 105 0 4 838 1 0 280 6 10 1638 0 19 777 11 22 67 21 21 28 1 0 88 10 9 48 1 0 26 1 3 39 19 0 94 5 6 96 8 7 50 1 0 45 1 0 41 0 1 105 chain 19333 chr11 135006516 + 86689022 86689249 L1PA5 6144 + 5913 6144 129133 142 0 4 85 chain 57945 chr11 135006516 + 86708783 86709569 MER4E1 777 - 12 777 54006 107 6 4 104 9 0 6 19 0 37 0 1 41 1 2 23 2 1 30 0 1 32 0 3 55 0 2 73 0 1 224 0 1 17 chain 42981 chr11 135006516 + 86737485 86738031 L1PA13 3608 + 1557 2095 65435 358 0 1 32 11 5 43 3 0 99 chain 544909 chr11 135006516 + 86758346 86764234 L1PA2 6032 + 2 5897 2084 282 0 1 2858 0 2 1081 0 4 1667 chain 21839 chr11 135006516 + 86773518 86773792 AluSg4 309 - 24 298 120859 79 1 0 179 4 5 11 chain 23305 chr11 135006516 + 86812745 86813045 AluSp 311 + 11 301 114175 96 0 1 174 4 0 13 7 0 6 chain 99955 chr11 135006516 + 86818311 86819462 L1PA5 6144 - 3 1157 36791 329 0 1 181 1 3 640 chain 457460 chr11 135006516 + 86873267 86882036 L1PA7 6471 - 3 5715 8493 331 1 2 435 0 2 15 3104 0 62 1 0 25 0 18 123 0 1 629 1 0 146 2 0 5 0 2 69 0 1 190 2 0 403 1 0 63 0 3 6 3 0 379 4 9 592 5 6 61 14 18 224 7 8 30 2 1 439 0 1 261 0 1 143 7 5 22 0 17 27 0 1 230 0 1 37 0 1 193 2 1 84 1 0 298 0 1 90 chain 243997 chr11 135006516 + 86874081 86876721 L1PA2 6032 - 3 2643 16560 2640 chain 16359 chr11 135006516 + 86876721 86876905 L1PA2 6032 + 2954 3138 137314 184 chain 22334 chr11 135006516 + 86876905 86877153 L1PA2 6032 + 3139 3387 117574 248 chain 3031 chr11 135006516 + 86890579 86890614 U5 65 + 0 35 224354 35 chain 18509 chr11 135006516 + 86922789 86923011 AluY 311 + 85 304 131474 47 0 1 160 4 0 11 chain 22848 chr11 135006516 + 86932978 86933247 AluYk4 311 + 21 305 116357 66 0 14 31 1 0 8 0 2 163 chain 8699 chr11 135006516 + 86947301 86947423 MER30 238 - 1 116 167198 47 3 0 61 4 0 7 chain 550896 chr11 135006516 + 86952900 86959042 L1PA3long 6157 - 1 6151 1329 119 20 25 4 1 0 1737 0 3 737 0 1 3524 chain 97711 chr11 135006516 + 86980393 86981463 L1PA3long 6157 - 4 1075 37364 272 0 1 798 chain 22222 chr11 135006516 + 86996933 86997358 LTR12C 1709 - 672 1059 119255 24 1 42 10 41 0 124 2 1 63 15 0 7 2 17 73 43 6 20 chain 3390 chr11 135006516 + 86996968 86997009 LTR12C 1709 - 985 1026 181646 41 chain 67756 chr11 135006516 + 87004455 87005255 L1PA8A 6298 - 9 807 49343 408 1 0 307 0 1 48 2 0 34 chain 565056 chr11 135006516 + 87051073 87057103 L1HS 6032 - 2 6032 203 6030 chain 15775 chr11 135006516 + 87074144 87074384 MER21C 908 - 651 907 139039 11 1 2 11 1 0 144 13 24 32 2 7 25 chain 30318 chr11 135006516 + 87086192 87086638 MER4A1 472 - 0 472 83866 68 11 13 21 0 3 121 33 54 192 chain 147598 chr11 135006516 + 87097571 87099404 L1P2 5180 + 2 1835 24940 148 1 0 44 7 6 34 0 2 11 1 0 268 1 2 46 1 0 224 1 0 6 1 0 161 0 1 281 0 1 422 1 2 174 chain 104116 chr11 135006516 + 87099404 87100962 L1PA6 6164 + 4919 6153 35665 40 0 1 353 1 6 514 331 1 319 chain 3744 chr11 135006516 + 87113958 87114006 L1MB1 2102 + 1958 2005 211260 9 1 0 38 chain 4609 chr11 135006516 + 87123476 87123600 L1MA4A 3247 + 2151 2257 199520 20 56 38 48 chain 23773 chr11 135006516 + 87129978 87130249 AluY 311 + 29 298 111635 94 2 0 175 chain 41360 chr11 135006516 + 87138353 87138818 L1PA5 6144 - 6 471 67459 465 chain 182886 chr11 135006516 + 87168102 87170165 L1PA5 6144 - 1 2071 20690 581 3 0 139 0 1 121 0 8 640 0 1 579 chain 7399 chr11 135006516 + 87175057 87175137 L1PA4 6152 + 5888 5968 174774 80 chain 6815 chr11 135006516 + 87185457 87185547 MADE1 96 - 0 96 178837 43 0 6 47 chain 37109 chr11 135006516 + 87205123 87205585 LTR2 463 - 0 463 73366 88 14 15 360 chain 32246 chr11 135006516 + 87205728 87206167 LTR7 482 - 13 482 80447 34 15 16 122 0 31 17 1 0 134 15 14 101 chain 229261 chr11 135006516 + 87208424 87211238 L1P3 4156 + 0 2807 17342 251 1 0 69 1 0 161 14 0 786 1 0 14 0 1 878 0 4 171 0 1 362 6 9 66 0 1 33 chain 44439 chr11 135006516 + 87211238 87211793 L1PA7 6471 + 5904 6469 63648 329 0 4 212 0 6 14 chain 503535 chr11 135006516 + 87213273 87219425 L1PA6 6164 - 14 6164 6632 143 6 0 80 0 3 238 0 1 82 0 3 303 0 4 272 10 1 68 1 0 235 9 4 64 2 0 280 0 4 236 60 0 853 1 6 80 0 1 4 2 0 57 5 0 40 2 1 761 1 2 142 1 0 239 0 4 67 1 48 378 1 0 252 0 1 174 0 1 43 0 1 107 0 11 22 0 1 133 0 4 129 1 0 567 chain 5896 chr11 135006516 + 87238657 87238742 MLT2A2 560 + 0 83 186225 57 7 5 21 chain 11363 chr11 135006516 + 87240772 87240978 MER41B 635 + 338 549 154846 17 1 0 7 1 11 78 39 35 63 chain 32841 chr11 135006516 + 87252552 87253051 PRIMA4_LTR 623 - 12 623 79475 59 5 7 78 26 105 57 1 0 4 16 22 15 1 4 59 0 23 178 chain 67512 chr11 135006516 + 87262314 87263208 L1PA13 3608 - 165 1059 49440 26 0 1 20 2 0 61 0 3 59 2 0 114 1 0 244 0 2 300 2 1 63 chain 39096 chr11 135006516 + 87266455 87266957 LTR10F 562 - 0 562 70607 59 1 2 266 0 3 68 1 57 55 8 0 9 0 8 35 chain 148343 chr11 135006516 + 87295786 87298314 L1PB1 5432 - 15 2203 24838 4 1 0 9 1 0 13 1 0 18 8 7 20 2 0 14 8 5 16 23 11 4 1 0 16 1 0 20 2 13 10 2 1 15 2 1 53 2 0 9 5 1 10 1 0 12 1 0 21 4 22 36 14 7 7 7 0 22 0 4 50 0 1 148 0 3 185 13 0 19 0 1 4 4 6 53 6 3 45 34 35 143 308 0 328 1 0 26 0 3 1 8 0 44 0 1 126 5 4 5 0 1 49 14 7 185 2 0 174 0 4 133 chain 462806 chr11 135006516 + 87299780 87305960 L1PA8A 6298 + 89 6291 8296 11 3 0 19 22 13 15 2 1 9 86 124 24 4 3 23 6 0 76 2 0 15 1 0 10 1 0 5 8 7 275 4 3 21 0 1 382 6 0 15 1 0 219 15 15 98 0 1 32 25 28 136 12 14 196 0 2 121 39 0 230 0 1 269 7 0 37 0 6 88 4 0 94 7 6 21 0 4 374 0 4 91 0 7 102 0 3 47 9 6 11 0 1 8 0 4 17 26 24 22 0 1 216 2 1 173 0 2 53 5 1 421 0 4 315 0 1 4 1 0 153 3 4 22 0 4 634 28 44 37 4 3 96 1 5 587 8 16 14 chain 532287 chr11 135006516 + 87329052 87335091 L1PA3long 6157 - 8 6157 3930 1878 0 3 1091 0 1 621 4 1 1091 4 9 548 13 141 76 0 3 656 27 0 30 chain 25242 chr11 135006516 + 87337245 87337534 L1PA3long 6157 - 725 1014 103521 289 chain 64053 chr11 135006516 + 87337534 87338261 L1PA3long 6157 + 5447 6157 50985 157 2 0 5 16 0 540 0 1 7 chain 164796 chr11 135006516 + 87340738 87342546 L1PA3long 6157 - 0 1808 22679 923 0 1 4 1 0 880 chain 24543 chr11 135006516 + 87360857 87361203 THE1B 368 - 0 368 107298 75 7 6 86 0 9 24 1 0 101 8 23 44 chain 544929 chr11 135006516 + 87363461 87369601 L1PA3long 6157 - 8 6149 2081 623 0 1 1334 2 1 1018 0 1 1979 0 3 153 1 0 876 3 1 151 chain 5061 chr11 135006516 + 87393629 87393742 MLT1C 463 - 298 406 194523 19 0 2 6 40 33 48 chain 207374 chr11 135006516 + 87397459 87400863 L1PA10 4194 + 1224 4150 18692 63 0 4 101 11 15 49 1 0 20 1 0 324 530 0 215 0 4 207 0 4 81 6 16 4 0 1 31 0 1 19 15 19 41 1 2 6 1 0 8 1 0 98 0 1 52 20 26 63 0 4 12 0 5 8 0 6 80 2 0 28 6 7 228 0 6 47 5 0 54 0 8 452 0 1 211 17 16 4 0 1 36 26 22 16 0 1 39 2 1 90 1 0 34 3 0 34 chain 41719 chr11 135006516 + 87398035 87398549 MER9a3 513 + 0 503 67003 13 0 1 291 12 0 198 chain 2638 chr11 135006516 + 87408859 87408887 L1P4 1494 - 1371 1399 231178 28 chain 494890 chr11 135006516 + 87408990 87415107 L1PA2 6032 - 0 6030 7125 926 0 1 4 1 0 259 0 1 605 0 4 581 0 1 85 1 0 4 0 1 22 0 1 729 0 1 165 0 1 55 0 5 698 0 20 62 8 7 655 15 16 265 2 1 7 0 1 71 139 11 48 9 16 128 0 1 155 0 1 161 6 5 98 1 0 152 chain 4455 chr11 135006516 + 87416904 87416977 L1MA2 4263 - 1578 1643 201286 40 9 1 24 chain 24937 chr11 135006516 + 87419300 87419675 L1MA2 4263 - 3744 4122 105129 28 3 0 9 5 4 126 4 0 9 4 0 10 0 7 75 1 0 85 0 1 4 1 9 11 chain 14609 chr11 135006516 + 87453792 87454027 MER44A 345 + 9 259 142554 48 10 11 18 3 8 35 0 3 44 1 5 11 0 3 56 1 0 8 chain 522545 chr11 135006516 + 87469300 87475429 L1PA5 6144 - 3 6144 4909 325 5 6 148 0 3 372 2 0 105 5 4 154 1 10 56 0 1 258 0 1 70 1 0 1288 0 5 623 7 12 400 3 0 487 5 6 1651 0 1 98 18 10 47 chain 344938 chr11 135006516 + 87492021 87496276 L1PA6 6164 + 1903 6151 11757 235 9 8 91 3 0 17 0 1 94 0 1 120 0 2 110 5 9 18 30 9 178 2 0 6 0 2 39 4 5 337 3 0 4 0 1 50 16 20 57 0 2 44 6 0 159 2 1 69 0 1 193 0 1 4 1 0 383 0 1 468 0 1 553 0 3 30 0 1 85 0 5 830 chain 507833 chr11 135006516 + 87502775 87512534 L1PA7 6471 - 12 6471 6342 161 1 0 595 2 1 56 17 25 441 0 1 554 1 3 142 2 0 219 8 9 253 5 7 11 3 2 82 3327 0 60 15 15 210 0 1 32 0 3 26 1 5 793 0 3 108 0 1 51 1 0 104 1 0 725 1 3 60 0 1 311 0 1 87 0 1 33 2 1 237 1 2 620 2 1 249 25 29 124 chain 192422 chr11 135006516 + 87505390 87507613 L1PA5 6144 - 12 2244 19820 150 4 5 396 0 1 228 0 3 75 0 4 641 0 1 681 1 0 47 chain 88246 chr11 135006516 + 87507618 87508655 L1PA5 6144 + 2866 3904 40252 708 0 1 329 chain 121244 chr11 135006516 + 87567769 87569135 L1PA5 6144 - 12 1379 30621 893 0 1 473 chain 17038 chr11 135006516 + 87585355 87585544 L1PA5 6144 + 5948 6137 135499 189 chain 26735 chr11 135006516 + 87596838 87597175 LTR14A 344 + 0 344 97206 131 0 5 106 5 1 18 3 9 74 chain 146983 chr11 135006516 + 87640470 87642108 L1PA4 6152 - 13 1653 25023 1284 0 1 204 0 1 150 chain 13026 chr11 135006516 + 87643021 87643182 L1PA8 5853 + 5694 5853 148154 46 2 1 20 1 0 92 chain 490745 chr11 135006516 + 87657294 87662913 L1PA4 6152 - 11 6151 7328 140 7 7 690 0 3 476 0 2 64 5 0 50 1 0 3 1 0 73 1 0 780 0 5 155 0 2 1304 1 4 180 0 2 924 3 0 16 3 0 17 2 0 210 4 1 303 1 0 107 0 525 84 1 0 13 chain 11132 chr11 135006516 + 87662919 87663064 L1PBa1 4058 + 283 427 155691 55 5 4 85 chain 547849 chr11 135006516 + 87760411 87766555 L1PA3long 6157 + 9 6157 1722 143 0 1 373 4 0 2081 0 1 342 0 1 407 0 1 1929 0 4 865 chain 280761 chr11 135006516 + 87776987 87780596 HERVH-int 3825 + 16 3825 14601 136 7 6 175 3 2 116 87 297 31 0 1 63 0 3 382 15 0 202 10 0 135 10 5 436 0 4 76 4 9 206 0 1 296 2 1 41 0 1 448 0 1 208 0 2 81 11 8 19 18 19 14 1 4 117 1 0 165 6 11 87 chain 30740 chr11 135006516 + 87782386 87782801 LTR7 482 + 0 482 82967 69 8 46 109 0 1 5 0 31 43 1 2 7 4 0 169 chain 7630 chr11 135006516 + 87782803 87782892 HERVH-int 3825 + 0 88 173355 22 1 0 66 chain 3298 chr11 135006516 + 87782901 87782937 LTR7B 505 + 454 490 219012 36 chain 14849 chr11 135006516 + 87800875 87801082 L1PA8 5853 + 5635 5853 141781 40 0 13 48 8 7 17 1 0 93 chain 17847 chr11 135006516 + 87802731 87802950 LTR12C 1709 + 859 1203 133250 200 0 125 19 chain 4046 chr11 135006516 + 87803051 87803101 LTR12C 1709 + 1018 1068 206714 50 chain 121537 chr11 135006516 + 87840713 87842297 L1P2 5180 - 1951 3518 30524 20 8 4 14 2 5 9 1 2 385 2 1 229 0 1 129 0 1 98 31 7 295 0 6 29 0 1 60 1 0 271 chain 117314 chr11 135006516 + 87842297 87843688 L1PA7 6471 + 5053 6458 31906 65 0 13 37 4 6 447 0 3 517 0 1 76 5 0 240 chain 40036 chr11 135006516 + 87859406 87859879 L1PA5 6144 + 5669 6144 69267 74 0 3 145 1 0 253 chain 2806 chr11 135006516 + 87913054 87913086 MER94 134 - 40 72 228653 32 chain 28232 chr11 135006516 + 87918562 87918862 AluYd8 298 - 0 298 92187 192 2 0 106 chain 524369 chr11 135006516 + 87951372 87957531 L1PA4 6152 - 9 6150 4736 1514 1 0 533 1 3 380 2 3 201 1 0 332 0 1 1692 0 2 232 8 9 9 1 0 171 32 19 358 0 4 353 36 23 302 chain 524689 chr11 135006516 + 87973669 87979777 L1PA5 6144 + 0 6135 4711 407 11 0 7 3 0 5 4 18 86 1 5 251 1 14 1146 1 0 715 6 7 108 0 4 402 1 0 31 0 1 2170 0 1 107 0 2 34 0 2 456 10 11 145 chain 5686 chr11 135006516 + 87988847 87988929 L1P4 1494 + 132 212 188233 6 5 0 5 0 3 66 chain 3006 chr11 135006516 + 87998100 87998134 MSTA 426 - 374 408 224920 34 chain 24390 chr11 135006516 + 88034286 88034742 MER51B 395 + 6 384 108138 33 13 0 37 107 43 68 1 0 42 1 0 4 0 1 150 chain 6458 chr11 135006516 + 88037104 88037203 MER21A 919 - 801 905 181574 43 14 19 42 chain 44348 chr11 135006516 + 88037702 88038555 MER41A 554 + 10 554 63761 154 4 0 123 307 2 265 chain 6780 chr11 135006516 + 88041052 88041151 LTR8 732 - 49 146 179107 27 9 7 63 chain 8719 chr11 135006516 + 88081084 88081187 MER30 238 - 135 238 167095 103 chain 22509 chr11 135006516 + 88094796 88095070 AluSq2 311 + 3 278 117994 130 0 1 144 chain 17277 chr11 135006516 + 88119685 88119944 AluSp 311 - 3 300 134839 26 5 1 126 14 54 20 7 9 61 chain 15383 chr11 135006516 + 88120973 88121161 AluSg7 307 + 25 212 140251 106 0 1 16 2 0 64 chain 19136 chr11 135006516 + 88123956 88124318 THE1B 368 - 0 368 129723 35 17 25 112 2 0 27 1 0 29 75 76 64 chain 353298 chr11 135006516 + 88126273 88130191 L1PA3long 6157 - 0 3917 11518 843 0 4 1492 5 1 646 1 0 931 chain 62858 chr11 135006516 + 88145274 88146090 L1PA8 5853 - 0 818 51506 92 2 1 16 1 0 44 24 22 70 2 0 44 1 0 84 0 1 167 0 8 269 chain 71009 chr11 135006516 + 88174766 88175628 L1PA7 6471 - 23 904 47923 112 0 3 35 4 11 161 0 1 508 0 3 15 0 5 27 chain 5375 chr11 135006516 + 88183653 88183773 MLT1D-int 1367 + 1257 1361 191253 39 30 18 20 1 0 11 3 0 16 chain 525997 chr11 135006516 + 88191030 88197152 L1PA4 6152 - 11 6144 4587 353 2 0 571 0 1 517 0 1 244 0 1 101 0 4 666 1 0 469 0 3 33 1 0 619 0 1 289 0 3 603 0 3 5 3 0 946 16 17 683 chain 31637 chr11 135006516 + 88232741 88233131 L1PA7 6471 - 1 393 81425 282 0 1 85 0 1 23 chain 18267 chr11 135006516 + 88260629 88260953 L1PA15 4387 + 4034 4341 132160 61 11 10 25 1 0 56 1 0 15 4 0 16 1 0 50 9 6 41 3 1 11 7 3 12 chain 76950 chr11 135006516 + 88345138 88345972 L1PA2 6032 - 4 838 44998 834 chain 9785 chr11 135006516 + 88345972 88346079 U6 107 - 0 107 161677 107 chain 41283 chr11 135006516 + 88369883 88370331 L1PA3long 6157 - 1163 1611 67436 448 chain 104498 chr11 135006516 + 88370331 88371483 L1PA3long 6157 + 5005 6157 35620 1152 chain 106513 chr11 135006516 + 88380669 88381834 L1PA2 6032 + 4866 6032 35116 636 0 1 529 chain 6289 chr11 135006516 + 88397522 88397602 MER2 342 + 87 165 182887 30 2 0 48 chain 30207 chr11 135006516 + 88404176 88404602 LTR19A 502 + 0 460 84173 139 4 1 55 6 42 74 12 13 136 chain 34963 chr11 135006516 + 88413248 88413664 L1PA5 6144 - 0 410 76242 5 2 0 98 4 0 307 chain 20732 chr11 135006516 + 88413664 88413895 L1PA5 6144 + 5500 5732 124843 191 0 1 40 chain 121712 chr11 135006516 + 88418136 88419705 THE1A-int 1579 + 1 1574 30478 13 0 2 175 5 4 444 1 0 5 1 4 868 1 2 56 chain 517929 chr11 135006516 + 88457780 88464192 L1PA7 6471 + 0 6466 5386 61 0 3 160 21 25 60 0 1 90 0 3 5 1 2 23 0 1 5 0 1 56 10 23 765 0 1 662 6 5 249 0 1 428 8 12 482 0 6 195 0 5 173 6 5 41 7 11 17 1 0 246 1 0 4 0 2 491 1 3 222 5 3 85 2 1 159 10 6 5 0 2 51 1 2 173 2 3 50 0 1 89 4 0 444 1 4 52 0 3 24 0 1 105 0 5 276 0 1 41 1 0 335 chain 320415 chr11 135006516 + 88482098 88486614 L1PA11 4918 + 13 4508 12578 26 5 3 43 4 1 29 1 0 13 2 0 53 1 0 32 2 0 5 2 1 39 7 10 83 1 4 501 0 1 74 14 19 376 7 5 63 0 1 208 0 4 116 17 24 66 4 1 19 0 4 147 0 11 13 11 12 42 0 1 60 29 1 25 91 71 36 1 5 19 0 1 6 1 0 5 0 1 423 6 10 363 1 0 5 0 1 11 1 0 275 0 7 6 6 0 272 0 1 89 5 0 458 0 3 36 0 1 4 1 0 137 1 0 12 2 0 6 0 1 61 2 0 12 2 1 20 chain 513285 chr11 135006516 + 88505621 88511755 L1PA6 6164 - 2 6164 5853 4 1 0 801 4 0 32 7 10 955 3 5 16 0 1 481 0 5 210 4 0 68 0 9 289 0 2 84 0 1 11 6 5 838 0 2 119 0 2 109 1 0 651 1 4 230 0 1 128 8 11 103 0 1 356 0 1 50 1 0 47 0 2 54 1 0 38 0 1 183 3 5 237 chain 204488 chr11 135006516 + 88535614 88537864 L1PA3long 6157 + 3905 6157 18890 39 0 1 1095 0 1 1116 chain 2950 chr11 135006516 + 88542969 88543024 MER53 195 + 0 56 226070 30 10 11 15 chain 30305 chr11 135006516 + 88549099 88549417 AluYb8 318 + 0 318 83896 318 chain 3589 chr11 135006516 + 88596907 88596948 MER63D 473 - 362 403 213846 41 chain 49867 chr11 135006516 + 88597564 88598175 L1PA7 6471 - 1725 2346 59105 220 0 2 97 0 4 287 0 4 7 chain 12903 chr11 135006516 + 88598175 88598338 L1PA7 6471 + 4757 4924 144810 61 4 8 98 chain 2824 chr11 135006516 + 88598339 88598374 L1PA7 6471 + 5073 5108 228315 35 chain 42426 chr11 135006516 + 88598377 88598876 L1PA7 6471 + 5109 5608 66107 158 0 1 4 1 0 336 chain 59080 chr11 135006516 + 88598876 88599574 L1PA7 6471 + 5609 6313 53346 14 0 1 86 0 1 304 0 4 294 chain 11963 chr11 135006516 + 88599585 88599729 L1PA7 6471 + 6325 6469 152350 144 chain 10643 chr11 135006516 + 88611057 88611183 L1PA3long 6157 + 6029 6157 157637 7 0 2 119 chain 21792 chr11 135006516 + 88615453 88615745 AluYk4 311 + 16 298 121051 116 33 23 143 chain 133677 chr11 135006516 + 88624195 88626306 HUERS-P3b-int 2065 + 15 2031 27282 80 6 0 204 4 0 6 85 10 100 1 0 27 0 4 71 0 17 47 3 0 168 0 7 18 1 0 41 17 15 25 1 0 213 35 29 41 41 39 43 0 1 98 10 28 124 1 0 44 25 2 84 2 0 13 1 0 25 1 0 89 3 1 72 2 0 14 6 3 12 1 0 54 4 0 57 2 1 89 chain 3071 chr11 135006516 + 88630077 88630111 MLT2B1 522 - 488 522 223559 34 chain 11334 chr11 135006516 + 88651481 88651608 L1PA3long 6157 + 6029 6156 154948 127 chain 6494 chr11 135006516 + 88653897 88653986 L1PA8 5853 - 0 93 181305 29 7 11 53 chain 12454 chr11 135006516 + 88654309 88654469 L1MA3 4352 + 1867 2028 150444 112 2 3 46 chain 24807 chr11 135006516 + 88689692 88689994 AluYk4 311 + 0 299 105853 279 5 2 18 chain 16321 chr11 135006516 + 88711541 88711791 MER30 238 - 0 238 137433 100 5 0 101 6 0 6 16 15 16 chain 530415 chr11 135006516 + 88720169 88726191 L1PA4 6152 + 6 6151 4136 148 0 1 425 1 0 118 7 0 72 0 128 3502 0 1 857 3 0 738 0 1 41 0 1 104 0 2 6 chain 38473 chr11 135006516 + 88732094 88732522 L1PA4 6152 + 4828 5256 71486 428 chain 4232 chr11 135006516 + 88732525 88732573 L1PA4 6152 + 5256 5304 204138 48 chain 75328 chr11 135006516 + 88732573 88733417 L1PA4 6152 + 5308 6152 45862 844 chain 28396 chr11 135006516 + 88742782 88743097 AluY 311 + 0 311 91599 123 8 4 184 chain 29340 chr11 135006516 + 88761957 88762360 L1PA7 6471 - 5 411 87341 68 5 1 69 1 0 4 0 1 15 6 24 9 12 0 143 0 1 71 chain 3244 chr11 135006516 + 88768390 88768426 L1PA6 6164 - 6 42 220118 36 chain 5140 chr11 135006516 + 88792969 88793046 L1PA8A 6298 - 7 80 193672 60 5 1 12 chain 87220 chr11 135006516 + 88809288 88810340 L1P1 4361 - 2021 3232 40681 25 2 1 255 0 1 270 5 173 445 9 0 41 chain 79777 chr11 135006516 + 88810340 88811284 L1PA5 6144 + 5182 6144 43623 165 1 21 764 3 1 11 chain 29183 chr11 135006516 + 88843801 88844112 AluYb8 318 - 7 318 88131 311 chain 4040 chr11 135006516 + 88844112 88844175 HSMAR1 1287 - 100 165 206787 19 9 11 35 chain 9737 chr11 135006516 + 88850538 88850649 L1PA5 6144 - 1532 1643 159737 111 chain 135431 chr11 135006516 + 88850649 88852186 L1PA5 6144 + 4604 6142 26933 901 0 1 636 chain 2911 chr11 135006516 + 88860850 88860881 LTR37B 484 + 226 257 226859 31 chain 26534 chr11 135006516 + 88865709 88866197 L1PB1 5432 + 4938 5399 97914 76 0 2 86 14 12 24 1 0 7 19 14 10 4 2 48 3 2 16 1 0 34 0 1 9 1 0 4 0 1 10 1 0 4 16 6 21 3 1 4 1 0 14 2 0 24 1 0 21 1 0 8 chain 21127 chr11 135006516 + 88887493 88887726 L1PA4 6152 - 1094 1327 123465 233 chain 7058 chr11 135006516 + 88887726 88887802 L1PA4 6152 + 5063 5139 175178 76 chain 18603 chr11 135006516 + 88887802 88888029 L1PA4 6152 + 5140 5371 131214 140 5 9 82 chain 68004 chr11 135006516 + 88888034 88888791 L1PA4 6152 + 5377 6134 49246 757 chain 26310 chr11 135006516 + 88894781 88895103 L1PA5 6144 - 105 427 98786 41 9 8 179 0 1 93 chain 29390 chr11 135006516 + 88906675 88906982 AluYa5 310 - 3 310 87123 307 chain 48314 chr11 135006516 + 88931935 88932494 L1PA5 6144 - 7 568 60233 82 2 0 377 0 4 98 chain 467958 chr11 135006516 + 88942137 88948689 L1PA6 6164 + 0 6156 8113 217 1 0 4 0 1 227 19 0 118 7 6 113 0 1 120 8 25 123 1 0 435 0 9 31 12 0 33 0 4 84 0 2 303 1 6 351 0 4 111 7 0 28 0 15 350 2 6 55 0 1 345 0 5 131 0 7 425 2 1 170 1 0 260 0 1 87 0 2 461 0 1 22 5 1 11 1 0 361 12 18 78 7 6 6 0 1 12 1 5 73 0 51 335 0 2 171 1 0 6 524 24 124 7 18 152 chain 93256 chr11 135006516 + 88986592 88987935 L1PB 1623 - 178 1506 38579 136 7 0 7 1 0 292 9 10 56 3 4 35 1 0 314 11 8 9 1 0 5 0 1 52 6 10 20 2 1 19 11 14 39 6 0 13 2 4 127 1 0 78 2 0 4 1 0 15 4 1 54 chain 552587 chr11 135006516 + 89046436 89052423 L1PA2 6032 - 18 6031 1121 5164 0 17 674 0 9 149 chain 33961 chr11 135006516 + 89093857 89094404 L1PB2 3958 + 3306 3838 77674 57 1 0 11 5 0 64 1 0 18 6 4 85 4 3 70 25 24 41 1 0 70 2 0 22 12 11 52 chain 215095 chr11 135006516 + 89114840 89118185 HERVH-int 3825 + 0 3825 18158 21 1 0 105 0 2 40 0 2 163 13 12 65 7 6 29 0 1 12 29 292 30 1 0 82 0 1 118 0 3 142 0 3 100 30 0 7 11 11 184 9 0 104 11 3 7 0 8 54 1 0 79 0 29 371 5 10 566 0 1 137 11 0 191 430 655 179 chain 169409 chr11 135006516 + 89127671 89129662 L1PA6 6164 - 2 1989 22132 6 4 0 1268 0 9 8 9 0 696 chain 167071 chr11 135006516 + 89129669 89131641 L1PA6 6164 + 2181 4159 22388 144 0 1 338 0 1 519 5 6 74 0 3 38 0 1 224 1 0 629 chain 18883 chr11 135006516 + 89136688 89136916 AluSp 311 + 63 287 130414 62 3 0 105 1 0 57 chain 533243 chr11 135006516 + 89159415 89165527 L1PA5 6144 + 3 6143 3816 58 0 1 971 1 0 299 0 1 84 0 3 634 0 1 138 0 2 50 0 2 414 0 1 108 4 8 45 0 1 684 0 6 313 5 6 1294 0 1 148 0 4 709 1 3 5 1 0 146 chain 14146 chr11 135006516 + 89183744 89183896 L1PA3long 6157 - 2 154 144051 152 chain 10679 chr11 135006516 + 89183928 89184058 L1PA5 6144 + 5677 5810 157489 104 2 5 24 chain 29128 chr11 135006516 + 89184058 89184388 L1PA5 6144 + 5811 6140 88415 221 1 0 108 chain 164151 chr11 135006516 + 89192630 89194482 L1PA4 6152 + 4291 6152 22786 55 0 1 288 1 0 669 0 4 833 0 5 6 chain 73866 chr11 135006516 + 89198168 89199111 L1PA7 6471 - 10 966 46581 149 18 16 6 0 6 6 0 1 284 0 3 66 1 2 82 0 1 118 3 0 6 0 3 84 0 3 120 chain 14215 chr11 135006516 + 89215560 89215848 MLT1B 390 + 90 388 143830 80 66 73 14 1 0 42 20 24 65 chain 3230 chr11 135006516 + 89238567 89238605 MADE1 96 - 7 45 220422 38 chain 168762 chr11 135006516 + 89282664 89285126 L1PA7 6471 - 5 2164 22191 327 9 1 346 306 9 159 0 3 229 1 10 272 22 0 11 22 27 123 1 0 275 0 8 44 0 1 42 0 1 4 1 0 88 7 9 163 3 0 7 chain 23999 chr11 135006516 + 89295985 89296352 THE1D 372 + 8 372 110337 85 12 11 56 30 31 5 2 0 144 1 0 32 chain 8147 chr11 135006516 + 89298817 89298905 L1PA2 6032 + 5942 6030 170246 88 chain 27185 chr11 135006516 + 89304868 89305425 MER4A1_ 611 + 9 604 95646 34 0 1 78 0 2 24 1 12 50 3 0 32 61 59 39 58 90 46 15 14 45 9 8 55 1 0 6 chain 3691 chr11 135006516 + 89357219 89357263 U2 167 - 114 158 212058 44 chain 44496 chr11 135006516 + 89363384 89363897 MER9a1 513 + 0 513 63585 513 chain 23869 chr11 135006516 + 89380111 89380385 AluYa5 310 - 7 280 111089 171 1 0 102 chain 6591 chr11 135006516 + 89420893 89420977 Tigger4a 237 - 36 120 180537 84 chain 5009 chr11 135006516 + 89424857 89424917 L1PA8 5853 - 0 60 195032 60 chain 11930 chr11 135006516 + 89429364 89429497 L1PA5 6144 - 101 234 152478 133 chain 8510 chr11 135006516 + 89429505 89429602 L1PA5 6144 + 6047 6144 168243 97 chain 30923 chr11 135006516 + 89438928 89439286 L1PA5 6144 + 5781 6140 82640 344 0 1 14 chain 543526 chr11 135006516 + 89477356 89483382 L1PA3long 6157 + 0 6155 2263 72 0 1 79 0 1 225 0 1 386 13 141 1130 2 1 3977 0 1 132 2 0 8 chain 528933 chr11 135006516 + 89522948 89529064 L1PA5 6144 + 3 6144 4311 692 0 7 557 0 3 246 1 4 1878 0 12 617 4 0 402 7 8 864 0 1 233 0 1 468 0 1 147 chain 24169 chr11 135006516 + 89556618 89556875 L1PA2 6032 - 4 261 109383 257 chain 55488 chr11 135006516 + 89562179 89563213 L1PA7 6471 + 5664 6470 55421 57 11 15 74 1 86 241 317 0 76 1 0 4 0 1 252 chain 2893 chr11 135006516 + 89566112 89566151 MADE1 96 - 57 96 227131 12 0 1 14 1 0 12 chain 7941 chr11 135006516 + 89593068 89593162 MER4E1 777 + 661 755 171375 94 chain 144089 chr11 135006516 + 89593162 89594765 SVA_D 2077 + 6 2062 25465 381 0 3 500 0 396 28 0 1 30 0 2 9 0 1 4 0 49 216 0 1 435 chain 143861 chr11 135006516 + 89716058 89717682 SVA_D 2077 - 7 2071 25503 8 13 0 441 0 1 214 0 50 9 0 2 30 0 1 28 3 399 497 0 3 381 chain 7941 chr11 135006516 + 89717682 89717776 MER4E1 777 - 22 116 171376 94 chain 55608 chr11 135006516 + 89747641 89748677 L1PA7 6471 - 1 807 55355 252 0 1 4 1 0 67 319 0 250 1 86 74 11 15 57 chain 24169 chr11 135006516 + 89754050 89754307 L1PA2 6032 + 5771 6028 109382 257 chain 529808 chr11 135006516 + 89776949 89783064 L1PA5 6144 - 2 6141 4212 145 0 1 468 0 1 239 0 1 858 7 8 402 4 0 279 0 1 337 0 12 1878 1 4 784 0 1 19 0 7 694 chain 28443 chr11 135006516 + 89789121 89789427 AluYk11 308 - 4 308 91410 178 2 0 126 chain 550794 chr11 135006516 + 89822864 89828897 L1PA2 6032 - 0 6031 1343 5 2 0 4118 2 1 1529 0 1 122 2 1 182 0 1 71 chain 20756 chr11 135006516 + 89839338 89839570 L1PA4 6152 - 686 918 124775 232 chain 58061 chr11 135006516 + 89839570 89840230 L1PA4 6152 + 5467 6152 53948 66 0 25 594 chain 14417 chr11 135006516 + 89847063 89847243 L1PA7 6471 - 51 223 143159 96 9 1 75 chain 67524 chr11 135006516 + 89861075 89861939 THE1A-int 1579 - 718 1579 49434 201 6 5 161 1 0 77 2 1 416 chain 28061 chr11 135006516 + 89861939 89862289 THE1A 353 - 0 353 92786 212 0 4 27 1 0 110 chain 9173 chr11 135006516 + 89900776 89901053 LTR12C 1709 + 928 1224 164693 49 12 12 30 13 13 44 109 128 20 chain 3309 chr11 135006516 + 89900924 89900988 LTR12C 1709 + 757 817 197837 24 22 18 18 chain 21303 chr11 135006516 + 89916757 89917024 MER47A 366 + 46 313 122850 267 chain 49368 chr11 135006516 + 89919186 89919738 L1PA2 6032 - 0 545 59472 10 7 0 10 1 0 249 1 0 192 0 2 82 chain 67892 chr11 135006516 + 89919738 89920474 L1PA2 6032 + 4762 5503 49293 420 0 4 69 0 1 247 chain 5499 chr11 135006516 + 89925202 89925278 L1ME1 1623 + 1213 1287 190046 69 2 0 5 chain 27757 chr11 135006516 + 89932522 89932839 AluYa5 310 + 0 301 93844 118 7 0 176 9 0 7 chain 30154 chr11 135006516 + 89952567 89952998 MER9a3 513 + 0 513 84324 18 0 2 151 6 7 80 0 17 43 7 67 14 0 1 30 6 7 76 chain 9602 chr11 135006516 + 89953153 89953350 MER30 238 + 51 238 162587 22 1 0 25 1 19 54 2 0 6 8 12 23 29 0 26 chain 118797 chr11 135006516 + 89973255 89974623 L1P1 4361 + 10 1387 31486 94 0 5 130 0 2 344 1 3 799 chain 20800 chr11 135006516 + 89981194 89981467 AluY 311 + 27 291 124596 96 1 0 9 8 9 142 9 0 8 chain 126262 chr11 135006516 + 89998441 90000000 L1PA7 6471 - 3 1565 29012 60 1 11 81 2 4 25 14 12 50 7 0 88 0 1 125 0 2 388 3 0 715 chain 288336 chr11 135006516 + 90000568 90004277 L1P3 4156 - 20 3745 14137 20 1 0 9 2 0 100 0 3 169 5 3 222 0 3 24 5 6 196 0 1 164 0 4 111 0 4 468 5 2 406 2 8 304 1 0 516 0 3 38 15 9 7 0 6 859 1 0 7 0 1 52 chain 11470 chr11 135006516 + 90004901 90005065 LTR17 781 - 455 621 154423 55 15 17 94 chain 12833 chr11 135006516 + 90006221 90006365 L1P1 4361 - 3988 4132 148914 144 chain 31128 chr11 135006516 + 90006365 90006715 L1PA4 6152 + 5786 6137 82287 31 0 1 319 chain 4165 chr11 135006516 + 90008867 90009662 L1PA4 6152 - 0 792 22131 6 3 0 786 chain 47184 chr11 135006516 + 90009665 90010194 L1PA4 6152 + 4834 5365 61058 460 0 1 65 0 1 4 chain 27883 chr11 135006516 + 90023509 90023798 AluYa5 310 - 21 310 93416 289 chain 490114 chr11 135006516 + 90029852 90036252 L1PA7 6471 - 4 6471 7361 147 13 13 80 8 1 64 0 1 29 0 1 431 11 13 60 0 4 91 1 0 320 0 1 256 1 0 138 11 20 72 2 1 103 1 0 236 1 2 114 1 0 41 1 0 40 0 2 235 0 4 152 0 1 187 0 1 211 0 1 150 3 4 304 1 14 481 3 0 156 3 9 25 1 0 80 0 5 137 1 0 191 4 8 60 0 1 45 5 6 220 0 3 244 7 11 488 11 10 80 8 13 245 0 1 149 19 29 84 6 10 131 chain 9116 chr11 135006516 + 90039464 90041204 L1PA4 6152 - 901 2642 22131 1248 0 1 492 chain 73449 chr11 135006516 + 90041208 90042067 L1PA4 6152 + 5275 6141 46813 28 5 9 222 0 1 38 0 1 318 1 0 109 0 1 36 0 1 102 chain 54700 chr11 135006516 + 90057061 90057914 L1MA1 4479 - 332 1168 55902 5 1 0 35 3 1 28 5 4 88 0 4 30 3 0 5 1 0 62 1 0 26 1 0 13 2 0 20 1 0 23 1 2 30 2 1 15 1 0 16 2 0 24 1 0 196 2 0 71 1 2 56 4 0 6 6 7 14 0 2 11 28 26 13 chain 10245 chr11 135006516 + 90079268 90079383 L1PA3long 6157 - 0 115 159401 115 chain 26640 chr11 135006516 + 90093962 90094440 L1PA14 3548 - 95 564 97510 38 1 0 7 36 31 36 10 15 53 0 1 53 4 3 40 1 0 20 3 7 12 1 0 6 2 0 8 10 6 111 3 1 5 2 0 16 chain 68207 chr11 135006516 + 90103165 90103924 L1PA3long 6157 - 668 1418 49157 724 9 0 26 chain 61385 chr11 135006516 + 90103924 90104590 L1PA3long 6157 + 5490 6157 52158 259 0 1 407 chain 87226 chr11 135006516 + 90125368 90126590 L1PBa 3878 + 2469 3691 40679 41 38 36 161 3 7 27 1 0 113 2 0 199 1 3 152 0 1 11 3 1 80 3 4 163 1 0 89 1 0 28 1 2 104 chain 34128 chr11 135006516 + 90132092 90132492 L1P1 4361 - 33 448 77439 23 1 0 157 0 3 37 0 13 182 chain 565706 chr11 135006516 + 90133235 90139266 L1HS 6032 - 0 6031 174 6031 chain 19568 chr11 135006516 + 90139360 90139577 L1PA4 6152 + 5931 6148 128465 217 chain 13785 chr11 135006516 + 90147223 90147378 L1PA5 6144 - 4 159 145319 155 chain 37412 chr11 135006516 + 90155876 90156357 LTR2B 499 - 0 499 72944 182 1 0 8 0 1 5 1 0 173 0 19 42 1 0 55 1 0 5 0 2 7 chain 24781 chr11 135006516 + 90197163 90197727 L1MA2 4263 + 3526 4074 105990 33 8 7 18 10 6 34 6 5 33 1 0 134 13 10 52 120 117 52 0 4 8 27 20 15 chain 38883 chr11 135006516 + 90245379 90245880 MER9a3 513 - 12 513 70893 56 2 0 133 1 5 19 18 1 13 0 18 55 4 0 187 0 1 13 chain 9308 chr11 135006516 + 90248150 90248256 L1P1 4361 + 3788 3895 164024 73 0 1 33 chain 24168 chr11 135006516 + 90266161 90266456 AluY 311 + 7 303 109384 123 1 2 171 chain 528711 chr11 135006516 + 90310653 90316775 L1PA4 6152 - 12 6149 4336 117 0 1 136 1 2 71 0 1 327 0 5 419 6 7 949 0 1 413 1 3 1538 0 1 322 1 2 956 0 1 865 chain 123506 chr11 135006516 + 90324164 90325662 L1PA5 6144 + 4622 6141 29878 78 0 2 166 0 2 226 1 2 5 0 1 189 1 5 45 0 5 405 0 4 214 23 25 145 chain 20287 chr11 135006516 + 90335799 90336087 THE1A 353 + 0 288 126263 109 12 11 81 4 8 8 3 0 71 chain 69603 chr11 135006516 + 90336153 90337008 THE1A-int 1579 + 0 855 48571 501 1 0 184 2 3 167 chain 24608 chr11 135006516 + 90337031 90337372 THE1A 353 + 0 353 106949 109 10 22 59 0 1 4 6 4 41 0 1 112 chain 29739 chr11 135006516 + 90359769 90360085 AluYb8 318 - 2 318 85698 316 chain 4843 chr11 135006516 + 90367368 90367421 THE1C-int 1605 - 6 59 196859 53 chain 144630 chr11 135006516 + 90369365 90371006 L1PA5 6144 - 0 1654 25380 447 2 1 128 0 13 662 0 1 402 chain 33184 chr11 135006516 + 90371007 90371378 L1PA5 6144 + 4125 4497 78928 272 0 1 99 chain 19473 chr11 135006516 + 90397683 90397938 L1PA6 6164 - 2 252 128738 8 3 0 137 2 0 105 chain 57604 chr11 135006516 + 90398388 90399184 L1PA8A 6298 - 9 770 54182 88 18 17 271 1 3 124 35 0 202 6 5 51 chain 547558 chr11 135006516 + 90418870 90425002 L1PA3long 6157 - 0 6148 1759 138 0 7 2904 7 12 702 0 1 652 0 1 569 1 4 412 1 0 746 chain 14459 chr11 135006516 + 90447982 90448339 THE1D 372 + 0 372 143022 53 9 23 7 4 0 37 112 118 94 14 13 27 chain 17047 chr11 135006516 + 90526948 90527134 L1PA4 6152 - 90 276 135465 186 chain 12703 chr11 135006516 + 90565356 90565499 L1PA8 5853 + 5264 5407 149439 143 chain 6865 chr11 135006516 + 90578377 90578463 MER44D 709 + 68 154 178463 86 chain 11162 chr11 135006516 + 90580518 90580657 MER85 139 + 0 138 155577 88 1 0 50 chain 223492 chr11 135006516 + 90591097 90593668 L1PA5 6144 + 3552 6132 17685 358 0 1 539 16 0 163 1 0 514 0 10 101 0 1 58 0 4 28 0 4 456 1 0 200 0 7 136 chain 6287 chr11 135006516 + 90609221 90609342 MER2 342 - 65 178 182904 25 33 25 63 chain 424410 chr11 135006516 + 90611869 90616740 L1PA4 6152 + 1235 6141 9436 322 0 2 623 1 2 874 0 3 140 0 2 6 3 1 470 1 0 41 4 28 208 0 2 917 1 0 428 0 4 137 0 1 695 chain 21412 chr11 135006516 + 90627260 90627547 L1PA8 5853 - 0 281 122467 91 7 6 14 1 0 54 1 0 11 1 0 69 2 0 36 chain 25492 chr11 135006516 + 90643592 90643894 AluY 311 + 7 310 102261 125 0 1 177 chain 20158 chr11 135006516 + 90659442 90659710 AluY 311 + 37 305 126650 86 1 0 9 0 1 6 7 4 7 0 3 152 chain 565106 chr11 135006516 + 90699439 90705470 L1HS 6032 - 0 6032 201 4037 0 1 1994 chain 385513 chr11 135006516 + 90706307 90711530 L1PA8 5853 + 685 5853 10591 5 0 3 22 234 245 189 0 1 8 2 1 747 0 2 81 6 10 684 1 2 552 0 1 1239 0 5 525 0 2 241 96 6 308 2 1 44 5 3 47 4 0 17 15 13 48 17 32 84 chain 34749 chr11 135006516 + 90714496 90714986 L1PA10 4194 - 43 536 76547 35 10 7 22 5 6 200 0 2 187 2 5 29 chain 124413 chr11 135006516 + 90728454 90729860 L1PA4 6152 - 17 1430 29568 96 0 1 731 1 5 417 0 1 114 0 1 47 chain 256910 chr11 135006516 + 90748861 90752356 L1PA7 6471 - 18 5133 15888 35 0 4 391 5 0 222 0 2 153 21 25 55 0 1 22 1 0 238 1 0 825 1 0 6 0 1 226 0 1 160 0 1 321 39 0 152 251 1902 40 1 0 52 0 1 227 3 5 47 chain 8653 chr11 135006516 + 90752356 90752464 L1P3 4156 + 3045 3154 164485 18 0 1 90 chain 86615 chr11 135006516 + 90752464 90753433 L1PA4 6152 + 5185 6152 40920 823 0 1 122 3 0 21 chain 161458 chr11 135006516 + 90766762 90768652 L1PA5 6144 - 2271 4178 23123 428 8 0 21 0 2 115 0 22 81 0 1 383 1 2 512 3 1 129 0 1 209 chain 186774 chr11 135006516 + 90768652 90770926 L1PA5 6144 + 3882 6144 20354 576 17 2 198 1 0 312 1 2 99 6 7 590 0 2 93 2 1 191 0 1 29 12 5 9 0 7 138 chain 227986 chr11 135006516 + 90791163 90794187 L1PA8A 6298 + 3239 6288 17418 49 4 5 104 2 5 184 0 12 43 0 1 13 0 3 215 4 7 4 1 0 84 0 1 6 5 6 112 5 4 351 1 4 373 2 0 248 8 4 356 0 1 55 2 1 83 1 0 331 0 5 225 2 0 38 18 21 95 chain 140310 chr11 135006516 + 90796048 90797650 SVA_D 2077 + 59 2056 26098 483 0 40 143 0 3 20 18 13 147 2 136 176 2 225 611 chain 36288 chr11 135006516 + 90805379 90805789 L1PA4 6152 + 4497 4907 74516 410 chain 53033 chr11 135006516 + 90805792 90806378 L1PA4 6152 + 5452 6038 56996 586 chain 10290 chr11 135006516 + 90806378 90806490 L1PA4 6152 + 6039 6151 159178 112 chain 5406 chr11 135006516 + 90812672 90812741 MER53 195 + 112 181 190928 69 chain 115475 chr11 135006516 + 90828164 90829472 L1PA5 6144 + 4831 6140 32617 979 1 2 328 chain 20114 chr11 135006516 + 90860962 90861204 L1PA5 6144 + 5893 6138 126784 204 0 3 38 chain 8393 chr11 135006516 + 90864711 90864805 L1PA4 6152 + 6055 6149 168890 94 chain 3470 chr11 135006516 + 90866629 90866680 LTR16C 481 + 411 463 215823 17 1 2 33 chain 3504 chr11 135006516 + 90887986 90888026 MADE1 96 - 4 44 215295 40 chain 13366 chr11 135006516 + 90894941 90895093 L1PA4 6152 - 6 159 146828 15 0 1 137 chain 56690 chr11 135006516 + 90895093 90895715 L1PA4 6152 + 5356 5978 54727 622 chain 76473 chr11 135006516 + 90904620 90905636 L1PA10 4194 + 1656 2678 45226 169 1 2 393 4 8 5 1 0 37 1 2 172 3 4 181 0 1 35 1 0 13 chain 28943 chr11 135006516 + 90908687 90908990 AluYa5 310 - 7 310 89262 303 chain 25657 chr11 135006516 + 90934828 90935120 L1PA5 6144 - 5 297 101461 292 chain 10236 chr11 135006516 + 90957701 90957811 L1PA5 6144 - 1961 2071 157789 110 chain 169213 chr11 135006516 + 90957811 90959766 L1PA5 6144 + 4189 6144 22152 91 0 2 32 1 0 30 0 4 626 0 4 319 0 4 230 4 0 518 9 0 95 chain 66523 chr11 135006516 + 90968065 90968784 L1PA3long 6157 - 15 734 49855 719 chain 238610 chr11 135006516 + 90984121 90987192 L1PA8 5853 - 4 3062 16847 29 3 2 58 2 1 17 1 0 54 1 0 9 1 0 71 2 0 46 1 0 42 1 0 225 0 1 14 0 2 137 24 14 116 0 2 127 0 1 504 16 22 12 13 14 145 1 2 222 0 1 548 12 4 532 1 0 84 chain 176117 chr11 135006516 + 90988673 90990694 L1PA5 6144 + 4073 6135 21344 238 0 1 22 3 11 283 1 0 81 2 0 296 0 6 11 0 1 220 0 24 4 1 0 4 0 1 21 0 4 834 chain 126396 chr11 135006516 + 91001741 91003242 LTR12C 1709 + 0 1709 28977 491 0 1 199 0 200 217 13 10 12 0 4 90 0 4 27 0 1 155 0 2 7 1 0 289 chain 23393 chr11 135006516 + 91008604 91008869 L1PA5 6144 + 5860 6125 113684 265 chain 30285 chr11 135006516 + 91031933 91032248 AluYb8 318 - 3 318 83980 315 chain 98418 chr11 135006516 + 91042027 91043102 L1PA3long 6157 - 15 1095 37188 982 0 5 93 chain 2756 chr11 135006516 + 91048934 91049438 L1PB1 5432 - 18 420 71591 10 1 0 13 5 4 17 1 0 24 3 1 13 8 5 30 14 1 15 1 0 45 1 0 17 1 0 52 2 0 9 2 0 12 1 0 9 1 0 23 1 0 9 75 8 20 0 4 9 8 0 52 chain 500866 chr11 135006516 + 91049480 91055570 L1PA6 6164 - 4 6134 6793 23 0 7 804 0 1 9 1 5 54 0 8 57 5 1 188 0 4 234 0 1 50 0 1 33 11 1 314 0 8 28 0 1 28 1 0 405 16 15 183 0 1 173 3 2 305 0 1 25 0 1 681 1 3 108 2 1 67 11 0 1141 4 13 211 0 25 83 4 0 389 1 0 437 chain 1979 chr11 135006516 + 91055593 91055955 L1PB1 5432 - 441 808 71591 67 0 1 110 0 1 6 2 1 61 6 7 54 0 3 56 chain 24721 chr11 135006516 + 91064814 91065104 AluY 311 + 0 285 106322 126 5 0 159 chain 121736 chr11 135006516 + 91078402 91079744 L1PA3long 6157 - 0 1347 30465 849 0 5 493 chain 20948 chr11 135006516 + 91100510 91100883 THE1D 372 - 0 372 124119 117 83 91 114 9 0 50 chain 11336 chr11 135006516 + 91101721 91101845 AluYb8 318 - 0 124 154936 124 chain 7692 chr11 135006516 + 91111234 91111345 L1PA8 5853 - 0 111 172978 19 0 1 70 8 7 14 chain 3763 chr11 135006516 + 91111692 91111740 Tigger7 736 + 71 120 210913 17 0 1 31 chain 38714 chr11 135006516 + 91113223 91113760 L1PA8 5853 - 0 532 71130 89 5 4 19 2 1 39 8 0 7 1 7 5 1 0 74 7 5 41 1 0 40 0 3 198 chain 39159 chr11 135006516 + 91125773 91126277 L1PA8 5853 - 1 498 70531 92 1 0 19 2 1 43 6 5 13 1 0 71 2 0 44 1 0 209 chain 65815 chr11 135006516 + 91133604 91134502 L1PA8 5853 - 0 896 50184 91 4 3 18 8 7 31 19 18 6 1 0 70 2 0 37 14 13 558 0 5 39 chain 69063 chr11 135006516 + 91134505 91135367 L1PA8 5853 + 4033 4958 48779 269 0 1 61 1 0 347 0 1 27 0 1 68 0 59 29 0 2 60 chain 72647 chr11 135006516 + 91157174 91158110 L1PA8A 6298 - 7 939 47196 113 0 1 27 4 8 133 0 1 179 0 13 157 21 0 14 3 5 67 10 3 79 0 3 129 chain 22459 chr11 135006516 + 91182017 91182281 AluY 311 + 28 293 118203 97 1 2 166 chain 22650 chr11 135006516 + 91185723 91185987 L1PA4 6152 + 5887 6152 117323 99 0 1 51 0 1 107 1 0 6 chain 35941 chr11 135006516 + 91214860 91215336 LTR2B 499 - 0 491 74968 98 1 0 82 1 0 10 0 1 172 6 25 42 3 0 5 0 1 49 1 0 6 chain 180618 chr11 135006516 + 91216364 91219251 L1PB1 5432 - 8 2606 20931 4 1 0 16 1 0 12 8 7 15 1 0 24 2 0 13 9 6 19 18 8 4 1 0 15 1 0 25 11 5 14 1 0 18 6 7 40 32 25 12 1 0 21 1 0 11 7 0 45 13 11 367 2 0 50 4 0 674 1 0 24 2 1 195 297 30 196 0 1 4 7 6 44 7 29 111 0 5 215 0 2 95 0 1 87 17 19 43 10 9 13 chain 40135 chr11 135006516 + 91222055 91222554 LTR10F 562 - 0 556 69131 9 1 0 238 1 0 53 0 59 197 chain 12294 chr11 135006516 + 91237571 91237709 MER85 139 + 1 139 151033 138 chain 91777 chr11 135006516 + 91237851 91238890 L1PA4 6152 - 0 1045 39038 6 0 5 122 0 1 911 chain 36444 chr11 135006516 + 91238890 91239293 L1PA4 6152 + 4699 5103 74304 51 0 1 352 chain 27046 chr11 135006516 + 91252893 91253216 L1PA5 6144 - 9 330 96125 78 0 1 60 3 0 182 chain 104592 chr11 135006516 + 91276530 91277819 L1PA7 6471 - 20 1295 35601 39 13 0 426 0 1 364 2 0 6 7 8 317 1 0 114 chain 450288 chr11 135006516 + 91309174 91316239 L1PA6 6164 + 0 6138 8758 88 0 735 601 0 2 425 0 1 82 0 4 1145 1673 0 418 0 1 750 6 7 42 0 2 25 0 1 30 3 7 282 0 1 71 11 14 381 5 3 196 0 2 308 10 0 391 1 2 121 chain 44485 chr11 135006516 + 91311522 91312013 L1PA3long 6157 - 1209 1701 63598 312 0 1 179 chain 106567 chr11 135006516 + 91312013 91313184 L1PA3long 6157 + 4976 6146 35100 1164 1 0 6 chain 9627 chr11 135006516 + 91322670 91322818 L1PB4 2604 - 2400 2544 162457 36 2 0 54 5 4 4 1 0 46 chain 431353 chr11 135006516 + 91330285 91335909 HERVL-int 5654 + 1 5646 9286 680 22 15 173 1 6 198 22 9 36 1 0 111 0 1 295 0 18 138 0 1 335 6 11 362 5 6 174 9 7 56 1 2 14 0 4 35 3 2 4 0 1 345 7 6 5 0 1 314 0 1 56 6 7 306 12 11 367 0 8 309 5 4 4 0 1 320 6 0 292 18 20 141 18 16 41 0 5 371 chain 24860 chr11 135006516 + 91357969 91358491 L1PB1 5432 + 4926 5412 105568 53 1 0 121 20 22 13 1 0 12 16 11 9 2 0 53 2 1 16 1 0 14 7 0 29 1 0 16 3 0 7 41 29 14 2 0 9 0 1 6 15 14 15 1 0 13 1 0 8 chain 126083 chr11 135006516 + 91408943 91410519 THE1A-int 1579 + 0 1579 29069 271 0 2 137 1 0 422 2 0 95 1 0 4 0 1 560 0 1 6 0 2 20 0 1 57 chain 27953 chr11 135006516 + 91410526 91410874 THE1A 353 + 7 353 93153 103 1 0 92 1 0 151 chain 268488 chr11 135006516 + 91414854 91417830 L1PA3long 6157 + 3174 6157 15262 1183 0 4 1633 6 6 142 0 3 12 chain 5600 chr11 135006516 + 91419063 91419124 L1PA4 6152 - 11 72 189080 61 chain 53843 chr11 135006516 + 91464154 91464853 LTR30 714 - 0 714 56459 76 8 9 171 10 11 87 0 10 96 1 0 9 1 3 5 2 0 21 0 2 60 0 2 152 chain 4131 chr11 135006516 + 91478423 91478473 MLT1C 463 - 32 82 205478 50 chain 12971 chr11 135006516 + 91483735 91484082 L1PB1 5432 - 5 318 148346 5 2 0 17 2 1 13 1 0 21 1 0 20 63 48 6 3 0 16 1 0 35 30 28 50 15 9 12 1 0 8 1 0 24 chain 118042 chr11 135006516 + 91515552 91517188 THE1B-int 1605 - 7 1605 31790 373 1 3 43 16 12 370 97 35 171 1 2 132 0 25 432 chain 3129 chr11 135006516 + 91527458 91527491 MER51A 677 - 280 313 222382 33 chain 4950 chr11 135006516 + 91528992 91529133 MER53 195 - 0 149 195703 20 22 23 34 26 31 12 1 3 26 chain 32487 chr11 135006516 + 91581426 91581842 L1PA6 6164 - 8 399 80049 235 5 0 44 20 0 112 chain 55417 chr11 135006516 + 91609305 91610053 MER4E1 777 + 6 777 55453 11 1 2 332 0 1 186 22 28 28 6 12 20 0 9 142 chain 23546 chr11 135006516 + 91629600 91629876 AluY 311 + 21 299 112872 111 0 1 29 0 1 136 chain 3170 chr11 135006516 + 91629889 91629978 MIR 256 - 65 151 221553 17 40 37 32 chain 235666 chr11 135006516 + 91649499 91652157 L1PA4 6152 + 3479 6138 16994 207 1 0 294 1 0 1131 0 1 297 0 3 584 1 0 142 chain 7400 chr11 135006516 + 91736271 91736352 L1PA3long 6157 + 6072 6153 174773 81 chain 29579 chr11 135006516 + 91739740 91740095 MLT2A1 477 + 0 361 86282 43 1 2 95 0 1 27 1 5 188 chain 17007 chr11 135006516 + 91742476 91742676 L1PBa 3878 - 1237 1437 135572 200 chain 499946 chr11 135006516 + 91742684 91748836 L1PA6 6164 - 5 6164 6844 844 1 0 564 2 0 377 1 3 237 0 1 122 0 1 319 3 0 513 1 3 130 0 1 714 7 0 469 0 1 138 1 0 558 9 18 462 1 2 169 0 3 5 8 4 85 0 14 9 14 3 43 20 0 8 3 24 75 6 5 29 8 9 11 48 48 138 chain 6662 chr11 135006516 + 91752146 91752225 THE1D 372 - 36 115 179973 79 chain 19122 chr11 135006516 + 91755019 91755264 L1PA7 6471 - 7 255 129768 6 0 2 134 2 3 103 chain 544233 chr11 135006516 + 91760054 91766074 L1PA2 6032 + 1 6031 2182 70 1 2 183 1 0 122 0 1 1566 0 10 4057 1 0 19 chain 25573 chr11 135006516 + 91774346 91774700 L1PA8 5853 + 5502 5849 101861 62 1 0 44 2 0 67 5 4 14 5 4 43 2 1 19 1 0 89 chain 99942 chr11 135006516 + 91776975 91778221 L1PA7 6471 + 5215 6461 36796 391 1 0 14 2 1 10 1 0 69 0 2 129 0 1 476 7 0 6 21 28 119 chain 535382 chr11 135006516 + 91805700 91811837 L1PA4 6152 + 0 6136 3539 2336 0 1 232 1 2 341 0 1 595 0 1 180 0 1 284 6 0 989 7 0 8 0 7 280 3 0 43 1 0 385 0 2 129 1 2 213 0 1 7 0 1 58 1 0 37 chain 40187 chr11 135006516 + 91823210 91823652 L1PA5 6144 - 5 447 69052 442 chain 7275 chr11 135006516 + 91825906 91826017 MER57D 437 + 328 437 175621 18 11 9 82 chain 246926 chr11 135006516 + 91827057 91829829 L1PA3long 6157 + 3384 6157 16398 304 2 1 1618 0 2 848 chain 22070 chr11 135006516 + 91846486 91846768 THE1B 368 - 0 281 119922 200 1 0 81 chain 168693 chr11 135006516 + 91890028 91892084 SVA_D 2077 + 7 2076 22198 13 12 0 161 0 15 527 2 0 38 0 40 107 2 0 4 2 0 31 45 5 20 78 0 68 0 2 26 0 37 238 0 50 274 0 1 312 0 4 96 chain 3119 chr11 135006516 + 91890927 91890972 SVA_D 2077 + 1130 1175 73019 45 chain 4436 chr11 135006516 + 91890992 91891056 SVA_D 2077 + 1244 1308 73019 64 chain 549851 chr11 135006516 + 91902571 91908732 L1PA3long 6157 + 4 6149 1467 442 2 1 225 3 1 161 1 0 4 0 1 351 0 3 356 23 3 655 0 2 1940 0 1 1334 0 1 664 chain 58736 chr11 135006516 + 91977960 91978665 L1PA7 6471 + 5763 6468 53562 235 8 0 7 2 11 121 1 0 331 chain 11673 chr11 135006516 + 92065671 92065807 MER107 203 - 58 194 153587 136 chain 58186 chr11 135006516 + 92092645 92093271 L1PA2 6032 - 1 627 53876 626 chain 8637 chr11 135006516 + 92093271 92093370 L1P1 4361 + 4230 4328 167554 75 1 0 23 chain 413891 chr11 135006516 + 92158555 92163681 L1PA7 6471 - 4 5190 9704 9 4 0 6 0 1 130 0 1 11 1 2 166 1 3 514 0 3 145 1 6 798 0 4 139 0 4 569 0 1 19 4 3 6 0 1 83 13 7 229 0 1 83 14 8 18 2 1 110 2 0 286 0 4 20 0 1 48 1 0 167 0 1 692 0 4 474 1 2 161 0 45 124 7 8 68 chain 171084 chr11 135006516 + 92163690 92165598 L1PA4 6152 - 13 1941 21929 1212 0 13 274 0 1 281 0 4 66 0 2 75 chain 22950 chr11 135006516 + 92198746 92199023 L1PA6 6164 + 5872 6162 115858 252 0 13 25 chain 71755 chr11 135006516 + 92199750 92200543 L1PA3long 6157 - 0 798 47589 457 0 2 258 0 3 78 chain 225544 chr11 135006516 + 92249090 92251839 L1PA7 6471 + 3744 6469 17556 988 0 8 409 0 2 49 5 12 390 0 4 8 2 0 312 49 6 204 0 1 23 5 6 41 0 1 250 3 0 11 chain 396839 chr11 135006516 + 92296814 92301218 L1PA3long 6157 + 1753 6157 10209 184 0 1 801 0 1 1161 0 1 247 0 1 491 1 0 252 0 1 417 0 2 657 5 0 170 1 0 17 chain 44826 chr11 135006516 + 92314991 92315545 MER41A 554 - 0 554 63263 554 chain 118880 chr11 135006516 + 92455185 92456721 THE1B-int 1605 - 5 1578 31462 23 0 8 43 0 2 503 13 15 358 13 11 170 0 2 8 0 25 405 chain 23493 chr11 135006516 + 92456746 92457090 THE1B 368 - 0 368 113160 125 29 42 6 3 0 27 1 0 113 0 15 40 chain 113667 chr11 135006516 + 92479682 92481208 THE1B-int 1605 - 0 1587 33182 149 1 2 143 14 11 146 9 11 386 12 6 88 6 3 44 8 7 4 0 1 71 5 6 4 1 0 64 0 64 116 0 6 255 chain 12664 chr11 135006516 + 92486965 92487286 L1PB1 5432 + 5106 5420 149590 9 3 0 19 1 0 10 11 15 10 2 0 51 2 1 16 1 0 33 63 65 11 2 0 17 11 10 18 1 0 13 1 0 16 chain 10354 chr11 135006516 + 92489317 92489510 MER44A 345 - 22 220 158890 38 4 2 29 1 0 6 4 5 51 27 34 33 chain 19375 chr11 135006516 + 92545506 92545759 AluSx4 309 + 40 292 129010 97 16 15 140 chain 30049 chr11 135006516 + 92545990 92546372 THE1C 375 + 0 375 84648 243 6 0 106 1 0 26 chain 4726 chr11 135006516 + 92546829 92546904 L1MD2 1676 - 222 293 198208 13 1 0 13 5 2 43 chain 13772 chr11 135006516 + 92547828 92548041 L1PA8 5853 + 5644 5853 145357 34 19 17 49 9 8 8 1 0 93 chain 80757 chr11 135006516 + 92676734 92677631 MER11D 897 - 0 897 43288 120 1 0 72 1 2 703 chain 39566 chr11 135006516 + 92677631 92678092 HERVK11D-int 613 - 0 460 69939 323 4 3 134 chain 78800 chr11 135006516 + 92682400 92683297 MER11D 897 - 0 897 44148 119 0 1 39 6 5 28 1 2 420 1 0 283 chain 19487 chr11 135006516 + 92686271 92686727 Tigger2 2703 - 85 415 128699 29 6 0 11 7 13 91 140 11 72 0 1 62 7 0 10 6 15 15 chain 13452 chr11 135006516 + 92687938 92688300 L1MA4 2864 - 30 358 146520 17 15 7 44 105 81 11 3 0 15 28 29 124 chain 2968 chr11 135006516 + 92718762 92718853 MIR 256 - 28 115 225703 32 41 37 18 chain 73208 chr11 135006516 + 92719423 92720300 HERVL-int 5654 - 4784 5654 46921 194 6 0 572 5 4 100 chain 30579 chr11 135006516 + 92720300 92720808 MLT2A1 477 - 0 477 83243 37 59 61 19 30 0 161 0 1 18 0 1 7 9 6 90 1 0 3 1 0 73 chain 54861 chr11 135006516 + 92736571 92737205 L1PA7 6471 - 1052 1686 55790 634 chain 86937 chr11 135006516 + 92737205 92738228 L1PA7 6471 + 5439 6465 40810 175 0 3 848 chain 60129 chr11 135006516 + 92738945 92739709 MER4E1 777 + 0 770 52756 25 2 0 167 1 0 122 5 2 226 1 9 57 1 5 157 chain 10862 chr11 135006516 + 92741399 92741548 THE1A 353 + 13 353 156735 66 8 199 75 chain 24027 chr11 135006516 + 92744405 92744675 L1PA4 6152 - 6 276 110176 270 chain 5763 chr11 135006516 + 92744675 92744737 L1PA4 6152 + 5829 5891 187506 62 chain 380425 chr11 135006516 + 92776088 92780415 L1P1 4361 + 1 4341 10742 519 0 4 6 4 0 1565 4 19 1310 0 1 726 1 0 154 1 0 23 2 1 12 chain 20111 chr11 135006516 + 92781198 92781429 L1PA4 6152 + 5920 6151 126791 231 chain 102832 chr11 135006516 + 92793553 92794769 L1PA7 6471 - 4 1218 36043 6 4 0 198 12 11 635 0 3 361 chain 126594 chr11 135006516 + 92798282 92799858 THE1A-int 1579 - 0 1579 28922 239 0 2 5 3 0 155 1 2 377 1 2 291 0 1 174 0 1 330 chain 25622 chr11 135006516 + 92799858 92800215 THE1A 353 - 0 353 101612 55 1 2 18 0 1 76 4 0 81 13 11 109 chain 98969 chr11 135006516 + 92835322 92836689 L1PA8 5853 - 0 1377 37031 93 1 0 19 2 1 132 2 0 44 1 0 165 4 5 40 50 0 14 31 104 141 0 1 7 5 0 78 2 0 3 2 0 73 1 0 457 chain 39084 chr11 135006516 + 92836689 92837152 LTR2 463 - 0 463 70625 463 chain 416239 chr11 135006516 + 92837152 92842053 Harlequin-int 5206 - 0 4917 9633 718 0 1 62 1 0 708 0 1 9 1 0 471 0 15 1169 0 2 288 6 7 508 1 0 141 3 0 5 5 8 195 0 3 26 1 0 22 0 1 168 1 0 86 0 1 76 0 1 32 3 0 108 1 0 74 1 0 11 chain 34539 chr11 135006516 + 92843585 92844023 LTR2 463 - 0 463 76847 326 0 6 39 4 20 9 1 4 59 chain 71422 chr11 135006516 + 92844097 92844998 L1PA8 5853 + 3496 4410 47736 322 4 5 22 1 0 283 1 9 20 0 3 141 6 9 54 1 0 46 chain 44908 chr11 135006516 + 92848360 92849002 MER50 708 - 32 708 63165 28 0 10 8 2 1 148 1 0 115 2 1 14 0 17 19 0 1 5 1 0 20 23 34 74 6 7 120 2 0 54 chain 14456 chr11 135006516 + 92863380 92863645 L1MA5A 2387 - 81 315 143030 11 1 0 31 0 4 30 28 0 13 7 4 58 2 0 45 5 4 34 chain 567603 chr11 135006516 + 92869804 92875839 L1HS 6032 + 0 6032 54 74 0 1 601 4 0 5356 chain 44093 chr11 135006516 + 92890392 92891093 L1PA13 3608 - 120 782 64102 16 33 28 42 18 15 52 1 0 62 2 0 113 1 0 31 1 0 16 37 14 118 1 3 54 13 8 90 chain 491739 chr11 135006516 + 92905613 92911687 L1PA2 6032 - 2 6022 7283 147 1 2 2264 0 1 1964 1 0 96 1 0 28 6 5 134 1 0 87 4 9 120 127 118 89 1 85 103 173 45 14 5 12 128 0 1 192 45 19 22 4 5 82 27 26 65 14 13 10 13 27 95 0 1 11 chain 10272 chr11 135006516 + 92911705 92911847 L1PB 1623 - 317 455 159266 25 6 0 48 0 2 63 chain 21770 chr11 135006516 + 92911850 92912093 L1PB 1623 + 878 1121 121130 243 chain 4782 chr11 135006516 + 92922150 92922208 MLT1C 463 - 276 337 197551 53 0 3 5 chain 3691 chr11 135006516 + 92928204 92928247 MLT1F1 559 - 304 347 212069 43 chain 27521 chr11 135006516 + 92948177 92948474 AluYa5 310 - 4 299 94599 184 2 0 111 chain 20892 chr11 135006516 + 92961710 92961988 AluSp 311 - 20 301 124305 13 0 1 210 17 19 38 chain 22841 chr11 135006516 + 92963471 92963741 AluY 311 + 12 297 116388 48 0 14 58 0 1 164 chain 29444 chr11 135006516 + 92976351 92976662 AluYa5 310 + 0 310 86885 132 1 0 178 chain 160880 chr11 135006516 + 92978487 92980478 L1PA7 6471 + 4487 6454 23215 71 14 5 420 20 10 50 7 0 571 0 2 94 1 0 293 0 2 5 6 4 293 2 3 144 chain 105654 chr11 135006516 + 92987054 92988569 L1PB1 5432 + 3934 5422 35340 280 0 1 201 2 1 209 9 0 186 7 6 109 1 6 144 7 4 22 17 11 20 1 0 12 1 0 12 16 10 52 2 1 14 0 1 45 1 0 13 2 0 8 15 6 18 3 1 5 1 0 14 2 0 24 1 0 18 5 18 16 chain 15064 chr11 135006516 + 93017150 93017338 L1PA4 6152 - 1 181 141127 140 7 0 27 2 1 12 chain 48208 chr11 135006516 + 93043731 93044362 L1MA3 4352 + 2610 3246 60308 113 6 5 12 3 6 112 0 1 234 0 2 151 chain 5131 chr11 135006516 + 93044774 93044832 L1MA3 4352 - 1505 1563 193765 58 chain 27099 chr11 135006516 + 93047462 93047788 THE1B-int 1605 - 1276 1605 95947 54 0 1 257 0 2 15 chain 11997 chr11 135006516 + 93074507 93074663 THE1A 353 + 188 353 152211 125 6 15 25 chain 134302 chr11 135006516 + 93079725 93081843 L1PA13 3608 - 246 2071 27152 28 1 0 60 10 8 96 14 13 29 1 0 162 0 1 212 0 21 19 1 0 6 3 4 29 0 5 158 0 1 88 1 0 32 0 2 92 6 9 110 337 5 41 0 1 148 0 4 10 6 11 9 1 0 175 0 4 35 1 0 197 chain 26214 chr11 135006516 + 93085747 93086100 THE1A 353 - 4 353 99147 239 2 1 24 15 12 73 chain 130413 chr11 135006516 + 93086100 93087672 THE1A-int 1579 - 0 1579 27985 498 0 3 34 0 1 116 0 1 767 1 2 111 0 1 45 chain 27865 chr11 135006516 + 93087672 93088026 THE1A 353 - 0 353 93476 243 1 0 110 chain 29019 chr11 135006516 + 93102815 93103124 AluYf4 310 + 0 309 88911 309 chain 28631 chr11 135006516 + 93105093 93105393 AluYa5 310 - 10 310 90606 300 chain 173396 chr11 135006516 + 93106830 93109103 L1PB1 5432 - 329 2610 21664 297 0 7 135 0 1 42 3 0 103 9 14 234 12 11 196 7 10 61 1 0 21 1 0 13 8 10 213 14 0 17 0 1 20 0 1 316 0 8 420 6 5 112 0 1 12 chain 5129 chr11 135006516 + 93140992 93141071 MADE1 96 - 0 96 193793 24 2 3 10 1 17 42 chain 276520 chr11 135006516 + 93149298 93152358 L1PA3long 6157 + 3094 6157 14841 296 1 4 2763 chain 28029 chr11 135006516 + 93153059 93154136 L1PA4 6152 + 3467 4546 17500 490 0 2 587 chain 565987 chr11 135006516 + 93154152 93160173 L1HS 6032 + 14 6032 156 60 0 1 601 4 0 5356 chain 40963 chr11 135006516 + 93160197 93161771 L1PA4 6152 + 4546 6151 17500 859 0 2 201 4 33 510 chain 508723 chr11 135006516 + 93172269 93178383 L1PA6 6164 - 4 6164 6264 339 0 10 308 0 1 7 0 4 380 0 14 463 0 1 134 0 2 259 0 1 152 0 1 126 1 0 132 0 15 116 0 1 444 6 10 343 0 1 131 8 11 168 0 4 713 1 0 1065 0 17 206 18 17 115 19 0 168 0 1 24 24 9 189 1 4 54 chain 97738 chr11 135006516 + 93187470 93188686 L1PA7 6471 + 5257 6470 37354 5 0 1 206 0 5 80 0 4 63 1 0 42 13 0 29 6 8 617 2 0 139 1 2 12 chain 523316 chr11 135006516 + 93191262 93197366 L1PA6 6164 + 0 6161 4834 162 0 34 40 0 2 280 0 2 47 2 1 520 1 4 779 0 1 462 0 1 839 4 5 2105 0 11 18 0 3 845 chain 10484 chr11 135006516 + 93205121 93205302 L1MA8 2339 - 905 1105 158316 29 28 26 39 0 23 68 2 0 15 chain 3334 chr11 135006516 + 93209811 93209847 MIR 256 + 13 49 218330 36 chain 17056 chr11 135006516 + 93236303 93236647 THE1B 368 - 12 368 135444 44 7 6 28 91 103 55 1 0 6 1 3 111 chain 30092 chr11 135006516 + 93242531 93243128 L1PB1 5432 + 4864 5422 84507 94 7 6 139 34 29 5 0 2 5 1 0 12 2 0 3 2 0 7 6 4 50 2 1 16 2 1 18 0 2 23 6 0 14 4 0 7 16 6 12 16 13 13 2 0 24 1 0 22 17 15 15 chain 31025 chr11 135006516 + 93264891 93265339 MER4A1 472 + 0 472 82473 75 0 1 144 8 29 48 7 10 89 23 22 54 chain 91614 chr11 135006516 + 93335189 93336273 L1PA5 6144 + 5049 6129 39088 48 0 1 196 1 0 139 4 0 364 8 9 248 1 0 75 chain 8615 chr11 135006516 + 93352074 93352232 MLT1C 463 - 302 458 167656 15 5 6 16 6 0 61 2 3 6 0 1 19 10 11 18 chain 41529 chr11 135006516 + 93354776 93355334 MER41A 554 + 0 554 67245 43 2 12 71 19 2 108 4 0 10 0 3 159 0 4 142 chain 33512 chr11 135006516 + 93357572 93358042 MER4A1 472 + 0 472 78389 26 1 2 5 1 0 193 1 0 7 0 4 31 1 5 9 22 17 173 chain 36722 chr11 135006516 + 93444999 93446192 L1MA3 4352 - 3484 4327 73926 95 2 0 257 0 1 22 685 340 56 4 1 59 1 0 12 chain 46389 chr11 135006516 + 93449672 93450340 LTR76 689 - 9 689 61695 15 2 0 14 5 4 7 2 0 4 3 0 86 2 1 151 2 1 9 2 0 144 9 0 87 8 28 80 0 5 22 0 8 14 chain 8873 chr11 135006516 + 93452770 93452879 HY1 111 + 2 111 166266 109 chain 21747 chr11 135006516 + 93475453 93475715 AluSp 311 - 16 276 121217 167 1 0 17 1 0 76 chain 53774 chr11 135006516 + 93492163 93492811 L1PA7 6471 + 5798 6459 56489 266 0 14 171 2 1 209 chain 24204 chr11 135006516 + 93500600 93500883 AluY 311 + 8 292 109186 124 0 1 159 chain 8475 chr11 135006516 + 93503112 93503215 MER57B2 428 + 0 102 168429 23 1 0 79 chain 154765 chr11 135006516 + 93511347 93513100 L1PA5 6144 - 14 1776 24008 300 0 13 324 3 0 116 1 0 1009 chain 29384 chr11 135006516 + 93537232 93537610 MLT2A1 477 - 92 477 87150 181 0 1 20 0 1 13 5 2 84 0 4 60 0 4 15 chain 8783 chr11 135006516 + 93560787 93560898 HY1 111 + 0 111 166750 111 chain 22482 chr11 135006516 + 93584389 93584654 AluY 311 + 43 304 118095 83 4 0 178 chain 140304 chr11 135006516 + 93586679 93588999 MER4-int 2692 - 0 2689 26100 85 1 0 113 25 28 22 1 651 15 0 1 22 0 1 207 1 0 36 5 0 28 1 6 48 6 14 98 0 1 95 0 1 127 1 7 138 20 16 12 0 1 12 1 0 16 6 0 36 1 3 78 0 1 47 4 3 87 1 5 23 0 1 45 0 9 147 1 0 83 2 0 32 299 0 37 0 4 124 9 8 16 4 3 45 3 0 18 2 0 25 1 0 8 chain 36096 chr11 135006516 + 93589971 93590426 MER4A1 472 - 12 471 74769 359 0 2 47 9 11 40 chain 13251 chr11 135006516 + 93591927 93592083 MER4A1 472 + 0 158 147285 14 0 2 142 chain 32420 chr11 135006516 + 93593930 93594361 MER4A1 472 + 0 455 80168 15 0 2 228 0 20 45 9 11 134 chain 23622 chr11 135006516 + 93594946 93595291 MER48 407 - 36 406 112456 8 0 3 83 2 0 96 2 0 5 11 30 54 13 20 71 chain 191358 chr11 135006516 + 93599242 93602654 HERVH48-int 3304 - 66 3185 19926 19 77 53 11 2 0 72 60 44 68 2 0 3 1 0 44 1 0 7 1 0 4 1 0 18 1 0 8 22 14 17 20 13 28 140 104 6 1 0 6 2 0 15 1 0 3 1 0 24 1 0 18 4 2 45 1 0 18 1 0 4 1 0 65 0 3 157 6 5 46 2 1 10 2 1 70 2 0 238 0 1 24 1 0 9 0 1 280 2 1 304 3 2 9 1 0 11 3 0 5 0 1 5 0 1 110 16 9 6 2 0 16 1 0 25 2 0 20 1 0 17 1 0 6 2 0 20 2 0 3 3 0 33 2 0 13 2 1 19 1 0 11 1 0 118 25 17 70 1 0 72 26 24 42 115 42 66 3 1 7 1 0 78 0 1 4 11 5 10 6 0 13 1 0 37 1 0 36 1 0 4 6 2 66 1 0 4 32 24 11 13 0 31 3 0 27 2 0 11 9 6 11 2 0 8 5 2 6 3 0 13 2 0 6 6 2 8 2 0 7 chain 30923 chr11 135006516 + 93605103 93605537 MER4A1 472 - 12 472 82641 88 9 11 97 26 48 200 0 2 14 chain 188351 chr11 135006516 + 93605545 93608363 MER4-int 2692 - 0 2573 20205 178 0 1 35 8 4 199 0 1 382 1 3 29 1 0 52 0 1 27 0 1 20 0 1 165 0 1 48 1 0 36 6 1 96 0 1 93 0 1 229 0 18 286 0 22 42 1 0 8 1 0 75 0 5 19 1 3 37 6 8 11 0 9 71 5 4 119 3 6 108 310 8 109 chain 28840 chr11 135006516 + 93611946 93612403 MER4A1 472 - 10 472 89723 24 0 13 142 58 58 4 0 1 21 22 8 150 0 5 36 chain 27170 chr11 135006516 + 93612526 93612965 LTR7B 505 + 0 490 95694 105 0 10 56 52 31 33 6 27 49 1 42 88 14 13 20 0 1 15 chain 27719 chr11 135006516 + 93617554 93617961 MER51B 395 - 0 395 93976 123 14 17 10 2 1 74 2 0 130 13 0 24 0 1 15 chain 82130 chr11 135006516 + 93631039 93632019 L1PA7 6471 - 2808 3803 42313 77 0 11 22 0 4 49 1 0 547 0 1 284 chain 239051 chr11 135006516 + 93632019 93634846 L1PA7 6471 + 3658 6470 16826 171 14 0 175 8 6 945 1 0 497 1 0 162 0 3 92 0 1 756 1 0 4 chain 35546 chr11 135006516 + 93659417 93659824 L1PA5 6144 + 5730 6140 75479 51 0 3 356 chain 29684 chr11 135006516 + 93662080 93662399 AluYb8 318 - 0 318 85889 100 1 0 218 chain 80582 chr11 135006516 + 93662399 93663512 L1PB3 3668 - 386 1491 43351 12 4 1 50 1 0 4 0 1 210 5 0 16 2 0 46 0 1 174 19 19 13 1 0 70 1 0 300 9 10 11 0 2 165 chain 23259 chr11 135006516 + 93664090 93664401 AluY 311 + 9 307 114390 78 10 5 33 2 1 161 7 0 20 chain 22463 chr11 135006516 + 93666669 93667004 THE1B 368 + 0 344 118181 169 6 5 17 42 52 101 chain 165590 chr11 135006516 + 93679253 93681391 SVA_F 1814 - 0 1804 22570 11 0 4 612 1 0 199 353 0 25 0 15 50 1 0 16 0 2 870 chain 17367 chr11 135006516 + 93680076 93680274 SVA_F 1814 - 650 848 96232 158 13 13 27 chain 8308 chr11 135006516 + 93680274 93680368 SVA_F 1814 - 623 716 139164 52 2 1 40 chain 5226 chr11 135006516 + 93680368 93680429 SVA_F 1814 - 540 601 133842 61 chain 4497 chr11 135006516 + 93698980 93699033 MSTB 430 - 377 430 200812 53 chain 34550 chr11 135006516 + 93706760 93707243 LTR15 485 - 10 485 76834 18 0 1 15 15 5 39 2 1 113 1 5 127 0 2 21 4 0 32 5 11 6 6 0 79 chain 250034 chr11 135006516 + 93737616 93740747 L1PA7 6471 - 3 3283 16254 657 1 4 92 0 3 10 6 7 77 2 0 483 5 0 268 0 1 131 76 215 321 0 3 187 1 0 220 6 10 160 1 2 230 0 6 176 4 0 17 chain 56693 chr11 135006516 + 93746282 93747172 L1PB2 3958 + 2957 3834 54725 294 1 2 5 1 0 49 6 4 50 1 0 10 2 0 3 3 0 63 3 1 14 17 13 80 1 0 8 37 41 24 1 0 61 1 0 67 25 23 6 1 0 40 0 3 16 chain 10284 chr11 135006516 + 93747589 93747707 Tigger1 2417 + 1610 1728 159216 118 chain 43507 chr11 135006516 + 93748061 93748571 MER9a3 513 + 0 513 64804 18 0 2 414 0 1 78 chain 10892 chr11 135006516 + 93768653 93768787 L1PA5 6144 - 0 126 156615 7 8 0 119 chain 558550 chr11 135006516 + 93770023 93776054 L1PA2 6032 + 2 6032 448 740 1 0 5290 chain 7158 chr11 135006516 + 93813083 93813178 L1PA10 4194 + 4058 4150 176358 58 3 0 34 chain 4916 chr11 135006516 + 93818079 93818148 MADE1 96 + 11 96 196094 31 1 17 37 chain 536091 chr11 135006516 + 93827182 93833319 L1PA5 6144 - 16 6144 3433 827 0 4 412 0 1 327 28 0 192 0 4 531 2 1 81 0 1 78 0 2 754 1 3 602 0 2 409 0 3 1665 0 1 228 chain 27851 chr11 135006516 + 93848936 93849317 MLT2A1 477 - 79 467 93522 13 1 3 209 1 5 14 14 15 129 chain 37881 chr11 135006516 + 93851409 93851891 LTR12 884 + 0 872 72305 131 0 66 74 0 90 17 2 0 174 0 236 84 chain 412475 chr11 135006516 + 93851931 93856812 HERV9-int 5642 + 0 4890 9733 139 0 2 654 10 9 303 25 27 117 13 12 2138 0 6 126 0 1 1356 chain 41105 chr11 135006516 + 93858451 93859003 LTR12 884 + 0 884 67763 262 0 91 25 2 0 70 17 24 80 0 236 96 chain 6755 chr11 135006516 + 93867625 93867728 MLT1A 405 + 1 102 179281 27 5 0 51 1 4 19 chain 18222 chr11 135006516 + 93887826 93888083 Tigger2a 444 - 1 264 132278 26 19 20 150 0 5 62 chain 534314 chr11 135006516 + 93889898 93896029 L1PA4 6152 - 0 6149 3676 6 0 5 249 1 0 261 9 0 466 4 0 207 2 0 206 4 0 1068 3 0 254 1 0 44 0 24 108 0 3 80 1 0 438 0 1 208 0 2 438 0 1 628 0 4 387 0 2 659 0 1 399 chain 9108 chr11 135006516 + 93898575 93898675 L1P1 4361 + 2072 2172 165031 100 chain 161560 chr11 135006516 + 93922828 93924650 L1PA5 6144 - 3 1837 23118 577 0 1 264 0 5 388 0 1 129 0 1 285 0 4 179 chain 69428 chr11 135006516 + 93924650 93925463 L1PA5 6144 + 3451 4271 48603 231 1 0 143 6 5 55 0 6 63 0 3 314 chain 75243 chr11 135006516 + 93942548 93943646 L1PA11 4918 + 3499 4578 45902 278 0 1 19 8 9 324 16 17 178 1 0 31 0 1 36 2 1 13 8 6 61 2 0 13 5 4 11 50 37 15 1 0 13 2 0 11 chain 10365 chr11 135006516 + 93965317 93965677 L1PA4 6152 - 11 371 15547 360 chain 549000 chr11 135006516 + 93965690 93971691 L1PA2 6032 - 3 6029 1578 1799 0 4 1609 0 5 1898 0 7 541 5 14 149 chain 79178 chr11 135006516 + 93971694 93974444 L1PA4 6152 - 371 3126 15547 306 0 1 1122 0 4 730 1 0 4 2 4 165 1 4 216 4 0 199 chain 28969 chr11 135006516 + 93976045 93976602 L1MA3 4352 + 3829 4347 89136 75 0 1 38 9 14 46 1 5 13 1 0 71 49 21 20 1 4 88 10 5 28 2 0 24 2 1 5 1 0 18 12 11 11 1 0 3 11 0 12 1 0 4 chain 19143 chr11 135006516 + 93980584 93981211 Tigger3b 1229 - 601 928 129700 43 19 17 33 316 3 31 1 19 149 10 7 25 chain 514760 chr11 135006516 + 93981248 93987357 L1PA5 6144 + 0 6125 5693 121 0 14 19 0 12 345 2 3 97 0 1 545 21 12 266 7 16 258 1 0 765 2 6 272 2 0 585 0 3 606 0 1 200 0 3 43 0 1 252 1 25 299 12 0 12 44 8 862 0 1 22 0 2 448 chain 53959 chr11 135006516 + 94001016 94001729 L1PB1 5432 + 3739 4450 56395 328 23 20 268 0 1 4 1 0 85 0 1 4 chain 153151 chr11 135006516 + 94002115 94003967 L1PA7 6471 + 4610 6467 24207 28 0 1 37 0 4 92 0 3 251 11 1 580 7 10 231 0 1 152 0 2 240 0 1 31 9 8 40 0 1 143 chain 5779 chr11 135006516 + 94004578 94004656 MER33 330 - 33 110 187362 4 0 1 49 2 0 23 chain 36377 chr11 135006516 + 94011450 94011907 LTR71A 459 + 0 459 74390 87 0 3 99 1 2 254 3 1 13 chain 25405 chr11 135006516 + 94018133 94018428 AluYc 301 - 6 301 102661 19 2 0 154 0 2 120 chain 262181 chr11 135006516 + 94050193 94053109 L1PA3long 6157 + 3217 6152 15573 42 0 4 253 0 4 625 0 1 237 5 12 827 0 2 321 0 1 606 chain 26111 chr11 135006516 + 94053133 94053424 L1PA3long 6157 + 5862 6153 99576 291 chain 14143 chr11 135006516 + 94065012 94065172 L1PA7 6471 + 6309 6469 144061 160 chain 72605 chr11 135006516 + 94073869 94074648 L1HS 6032 + 5252 6032 47214 165 0 1 614 chain 26228 chr11 135006516 + 94078890 94079274 LTR7 482 + 0 467 99095 69 8 46 109 8 40 50 0 10 41 0 1 53 12 14 34 chain 300729 chr11 135006516 + 94079291 94087045 HERVH-int 3825 + 0 3825 13383 428 3 0 31 1 2 74 5 0 6 1 0 4 0 1 24 1 0 10 92 76 35 2 22 66 1 0 81 0 1 209 13 14 142 15 0 110 3938 0 139 1 0 649 0 1 99 0 4 63 7 6 49 0 4 234 1 0 6 0 1 235 0 17 197 39 41 460 0 1 283 chain 176785 chr11 135006516 + 94080747 94082919 HERVH-int 3825 + 1429 3825 21274 29 0 2 10 1 0 197 0 1 111 0 1 306 11 16 968 9 11 39 8 218 143 0 2 115 0 2 225 chain 508509 chr11 135006516 + 94091894 94098072 L1PA5 6144 + 2 6143 6278 133 52 66 272 3 4 472 24 0 220 9 0 191 23 0 73 1 0 66 0 1 81 0 1 731 2 1 132 2 0 125 7 8 256 6 5 646 0 1 338 0 1 473 0 4 317 0 1 527 0 1 234 2 1 742 1 0 17 chain 541435 chr11 135006516 + 94103543 94109684 L1PA4 6152 + 6 6151 2597 769 1 2 1926 0 5 134 6 5 719 0 3 263 0 1 364 0 1 343 8 9 284 7 1 459 1 0 857 chain 117700 chr11 135006516 + 94115543 94117338 L1P3 4156 + 2648 4139 31894 449 0 4 47 306 0 333 0 2 17 1 0 57 1 2 158 0 1 280 3 1 107 3 1 6 1 0 26 chain 521358 chr11 135006516 + 94117527 94123495 L1PA5 6144 + 0 6144 5023 271 0 141 264 0 2 115 1 0 1567 0 22 1298 0 4 266 0 2 1340 1 6 834 0 1 11 chain 172682 chr11 135006516 + 94123504 94125640 L1PA7 6471 + 4324 6467 21743 881 1 0 7 0 1 118 1 2 33 6 9 131 1 0 115 2 0 785 19 25 36 chain 120772 chr11 135006516 + 94139925 94141658 L1PB1 5432 - 12 1845 30769 16 1 0 13 1 0 21 1 0 26 2 0 12 8 5 19 12 5 7 2 0 16 1 0 39 9 8 12 2 1 42 1 2 7 2 0 11 16 11 13 1 0 20 3 0 11 7 0 355 0 2 25 8 7 101 14 18 22 1 0 214 1 137 52 2 0 65 6 7 77 1 0 68 1 3 218 3 0 145 chain 106597 chr11 135006516 + 94141685 94143031 L1PB1 5432 + 2184 3539 35092 74 0 1 151 6 7 78 2 0 339 2 0 6 1 2 544 0 4 86 2 0 8 0 8 47 chain 15695 chr11 135006516 + 94143161 94143357 L1PA6 6164 - 2 211 139285 27 1 9 109 0 5 59 chain 8000 chr11 135006516 + 94154946 94155193 L1MB2 1706 + 1454 1693 171062 58 101 88 11 1 0 27 14 20 35 chain 15991 chr11 135006516 + 94177517 94177730 MER107 203 - 0 203 138378 38 11 0 34 0 1 130 chain 69554 chr11 135006516 + 94194616 94195741 L1PA5 6144 + 3961 4779 48586 189 0 4 144 315 0 19 0 1 6 1 3 99 0 1 352 chain 118271 chr11 135006516 + 94195743 94197108 L1PA5 6144 + 4780 6141 31703 1355 4 0 6 chain 26677 chr11 135006516 + 94216504 94216872 THE1B 368 + 0 368 97400 12 3 1 24 0 5 130 2 1 65 0 1 88 3 0 41 chain 3021 chr11 135006516 + 94220369 94220405 L1MB2 1706 + 1658 1694 224591 36 chain 2726 chr11 135006516 + 94225200 94225244 MIRc 230 - 121 167 229779 11 5 7 28 chain 8820 chr11 135006516 + 94254498 94254707 MER47B 469 + 100 421 166556 8 7 0 20 66 187 99 2 0 7 chain 5704 chr11 135006516 + 94264793 94264863 MER5A1 166 - 71 141 188075 70 chain 12388 chr11 135006516 + 94271713 94271909 MER2 342 + 87 278 150675 21 1 0 11 4 0 68 1 0 26 11 10 5 0 2 48 chain 15213 chr11 135006516 + 94289805 94290182 L1PREC2 3366 - 357 697 140734 35 24 11 11 11 8 22 3 1 11 56 43 13 3 0 4 1 0 6 2 1 34 11 10 47 2 0 5 0 1 36 0 1 40 chain 24933 chr11 135006516 + 94294794 94295323 MER6A 605 - 31 581 105145 60 3 0 78 1 0 30 0 4 112 94 106 32 77 86 42 chain 8732 chr11 135006516 + 94302846 94302963 L1PB4 2604 + 2454 2570 167013 98 1 0 18 chain 209080 chr11 135006516 + 94304458 94306839 L1PA5 6144 - 5 2385 18563 630 2 0 1085 0 1 664 chain 80378 chr11 135006516 + 94333495 94334499 MER11C 1089 - 68 1089 43441 238 0 9 36 0 1 38 1 0 5 0 4 78 0 1 7 15 13 270 0 4 67 0 1 249 chain 25203 chr11 135006516 + 94358455 94358806 THE1B 368 - 0 368 103727 56 4 6 13 1 0 68 0 2 42 10 9 117 0 15 40 chain 115447 chr11 135006516 + 94358806 94360390 THE1B-int 1605 - 0 1605 32626 287 1 0 151 1 2 21 6 10 28 0 1 28 5 0 108 12 14 473 28 53 296 23 15 100 5 7 11 chain 29309 chr11 135006516 + 94374766 94375175 LTR7 482 + 0 482 87517 67 10 48 109 0 1 39 0 31 10 0 1 113 12 14 49 chain 296051 chr11 135006516 + 94375177 94378809 HERVH-int 3825 + 0 3825 13642 211 0 11 111 1 0 43 0 4 102 0 1 47 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 24 12 29 3 0 12 6 4 7 1 0 30 2 0 11 1 0 13 32 1 45 0 1 6 0 2 14 0 3 444 15 0 86 14 0 11 0 2 86 1 0 64 1 0 210 4 31 114 0 1 175 1 15 1049 9 11 39 8 218 262 0 2 223 chain 28259 chr11 135006516 + 94380068 94380460 LTR7 482 + 0 465 92080 69 8 46 110 0 1 38 0 31 12 0 1 111 12 14 32 chain 16564 chr11 135006516 + 94403672 94404043 MSTA 426 + 0 414 136751 16 0 2 29 19 20 41 22 46 50 4 0 12 2 0 5 39 44 35 8 27 39 6 4 44 chain 24273 chr11 135006516 + 94445434 94445796 L1P4 1494 + 1052 1428 108823 10 0 6 133 9 23 126 1 0 40 2 0 20 4 0 6 0 1 11 chain 5320 chr11 135006516 + 94454331 94454567 MER33 330 + 31 262 191824 6 2 0 32 135 133 37 2 0 8 0 2 8 1 0 5 chain 15551 chr11 135006516 + 94478230 94478491 L1PA6 6164 - 3 227 139726 114 6 12 19 46 0 65 0 3 11 chain 4692 chr11 135006516 + 94487913 94488003 MER53 195 - 5 85 198608 8 9 0 43 9 8 21 chain 26386 chr11 135006516 + 94520605 94520883 AluYg6 310 + 32 310 98466 278 chain 21778 chr11 135006516 + 94525240 94525482 L1PA5 6144 + 5738 5980 121107 242 chain 12717 chr11 135006516 + 94525497 94525636 L1PA5 6144 + 5997 6136 149392 139 chain 8990 chr11 135006516 + 94541144 94541251 MER4A 717 + 10 117 165658 107 chain 9121 chr11 135006516 + 94545808 94545915 MER4A1_ 611 - 494 601 164965 107 chain 24951 chr11 135006516 + 94567471 94567768 AluY 311 + 0 293 105049 132 0 1 45 7 2 113 chain 30899 chr11 135006516 + 94586311 94586760 L1PA8 5853 - 0 462 82682 93 1 0 19 2 1 38 0 7 8 25 17 62 2 0 44 1 0 93 0 19 61 chain 5069 chr11 135006516 + 94589336 94589396 Tigger4a 237 - 1 61 194442 60 chain 6918 chr11 135006516 + 94623022 94623120 L1MA5 2750 - 1333 1435 178047 46 8 12 44 chain 87043 chr11 135006516 + 94635630 94636871 L1PA16 3655 + 1183 2436 40758 20 1 0 18 11 0 11 0 20 123 1 0 3 7 0 417 1 0 42 0 1 12 0 2 26 18 22 237 8 11 84 1 0 36 10 11 33 11 14 110 chain 19741 chr11 135006516 + 94657720 94657963 MER75B 242 + 0 242 127981 137 5 4 101 chain 24246 chr11 135006516 + 94658513 94658864 THE1D 372 - 6 372 108963 111 29 30 32 0 3 82 0 1 32 6 16 59 chain 22200 chr11 135006516 + 94665266 94666020 L1PA16 3655 + 3304 3619 119355 106 415 0 168 3 0 14 16 0 11 5 0 16 chain 4123 chr11 135006516 + 94676582 94676744 LTR16B1 483 + 125 346 205620 13 1 2 15 92 150 41 chain 3098 chr11 135006516 + 94729574 94729608 U2 167 - 133 167 222934 34 chain 21438 chr11 135006516 + 94733991 94734473 L1PB1 5432 - 21 424 122378 7 1 0 13 0 3 18 1 0 23 3 1 14 1 0 5 2 0 30 34 20 40 1 0 15 3 2 53 2 0 8 19 14 7 1 0 24 68 11 83 0 6 6 chain 29303 chr11 135006516 + 94752559 94752975 LTR7B 505 - 12 503 87557 39 14 13 76 1 0 80 16 18 15 6 68 69 0 10 8 0 3 92 chain 153637 chr11 135006516 + 94755147 94757693 HERVH-int 3825 - 2 3754 24138 443 1 2 118 28 30 940 1 0 5 5 6 93 589 1791 62 1 0 178 10 11 68 0 1 4 chain 30991 chr11 135006516 + 94757772 94758226 LTR7B 505 - 10 505 82536 41 17 16 76 1 0 82 0 2 26 21 45 10 6 13 69 0 10 105 chain 3378 chr11 135006516 + 94793224 94793289 LTR16A 446 + 124 191 217535 32 14 16 19 chain 4202 chr11 135006516 + 94831103 94831308 Tigger4a 237 - 2 69 204518 46 141 0 13 0 3 5 chain 51193 chr11 135006516 + 94858624 94859192 L1PA4 6152 - 16 584 58192 568 chain 38416 chr11 135006516 + 94869775 94870218 L1PA6 6164 - 2 445 71556 146 0 1 11 1 0 285 chain 27250 chr11 135006516 + 94895452 94895750 AluY 311 + 2 300 95431 298 chain 126371 chr11 135006516 + 94941695 94943522 L1PA7 6471 + 4920 6455 28985 27 0 1 4 1 0 33 0 1 628 0 3 86 1 0 51 11 31 48 1 0 304 318 0 176 1 9 106 4 0 27 chain 26150 chr11 135006516 + 94969417 94969758 THE1A 353 + 0 341 99399 109 8 7 83 1 0 96 0 2 44 chain 65972 chr11 135006516 + 95006555 95007319 L1PA5 6144 + 5380 6144 50116 764 chain 28748 chr11 135006516 + 95020358 95020670 AluYk12 309 - 3 309 90134 174 6 0 132 chain 23228 chr11 135006516 + 95026592 95026888 AluSp 311 - 6 301 114554 6 2 0 192 0 1 96 chain 40599 chr11 135006516 + 95042582 95043054 LTR7Y 441 + 0 441 68442 165 31 0 276 chain 290982 chr11 135006516 + 95043054 95046714 HERVH-int 3825 + 0 3825 13962 532 130 0 38 1 0 10 1 0 24 29 0 14 1 0 12 13 10 17 11 72 26 0 1 7 0 2 13 0 3 114 1 0 8 0 1 520 2 1 27 0 2 231 4 31 25 0 8 262 0 10 964 3 3 82 9 11 39 8 218 254 3 8 225 chain 3320 chr11 135006516 + 95043652 95043690 HERVH-int 3825 + 532 570 218602 38 chain 39306 chr11 135006516 + 95050496 95050957 LTR7Y 441 + 0 431 70314 165 31 0 158 0 1 107 chain 156787 chr11 135006516 + 95053389 95055219 SVA_F 1814 - 0 1804 23761 600 0 49 154 1 0 10 1 0 39 1 16 10 126 0 56 1 0 60 0 40 49 0 1 107 1 0 39 1 0 574 chain 10211 chr11 135006516 + 95054205 95054331 SVA_F 1814 - 687 813 89321 126 chain 66888 chr11 135006516 + 95133130 95133977 L1PA8 5853 - 0 853 49688 93 1 0 15 1 0 4 8 7 46 0 13 19 0 1 46 2 0 45 1 0 420 1 0 105 0 1 29 2 0 9 chain 127959 chr11 135006516 + 95134575 95136667 L1PB1 5432 - 10 1801 28578 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 10 3 1 13 15 6 6 2 0 15 1 0 45 1 0 15 2 1 52 16 10 14 43 14 16 211 12 105 4 2 167 3 4 16 5 4 99 7 0 77 3 0 181 5 6 335 1 7 52 1 0 80 17 5 229 11 0 5 16 0 97 chain 227861 chr11 135006516 + 95142451 95145121 L1PA6 6164 + 3498 6162 17431 502 8 0 179 0 1 499 1 0 89 0 1 283 4 0 42 6 7 211 0 4 846 chain 6804 chr11 135006516 + 95163536 95163708 MER33 330 - 10 179 178926 16 22 17 26 24 0 55 9 35 20 chain 567742 chr11 135006516 + 95169380 95175410 L1HS 6032 + 1 6032 43 73 0 1 5957 chain 266561 chr11 135006516 + 95202755 95205743 L1PA5 6144 - 0 2998 15361 850 1 0 393 0 4 1230 0 5 235 0 1 124 0 1 155 chain 4797 chr11 135006516 + 95206482 95206538 HY1 111 - 55 111 197386 56 chain 144406 chr11 135006516 + 95214972 95216578 SVA_D 2077 + 25 2070 25411 892 1 0 3 0 38 46 0 403 213 1 0 450 chain 6803 chr11 135006516 + 95257213 95257298 5S 121 - 36 121 178931 85 chain 109486 chr11 135006516 + 95261129 95262698 L1PB1 5432 - 10 1571 34320 18 1 0 13 1 0 19 7 6 20 17 14 5 2 0 21 22 10 15 1 0 37 8 7 15 1 0 49 7 5 22 5 4 28 1 0 9 1 8 126 0 1 266 0 2 10 2 3 68 1 0 234 1 0 6 18 25 51 0 1 347 0 1 9 0 1 85 chain 13631 chr11 135006516 + 95312477 95312751 L1PB1 5432 - 2 262 145849 4 1 0 4 1 0 18 1 0 12 1 0 22 1 0 24 2 0 14 9 6 18 15 6 6 2 0 15 1 0 9 0 10 25 7 6 9 1 0 52 chain 81770 chr11 135006516 + 95313304 95314282 L1PA5 6144 - 9 979 42861 120 40 33 231 1 0 586 chain 3433 chr11 135006516 + 95340651 95340693 MER4D0 881 + 0 42 216531 42 chain 128005 chr11 135006516 + 95343951 95345694 MER57-int 2662 - 345 2136 28566 259 1 2 147 3 0 114 45 43 132 0 15 5 0 1 127 28 24 27 0 2 19 1 0 22 0 2 5 0 2 261 0 4 165 0 1 60 0 8 37 0 2 189 0 20 96 chain 15070 chr11 135006516 + 95354615 95354778 L1PA4 6152 - 189 352 141110 163 chain 10976 chr11 135006516 + 95354778 95354896 L1PA4 6152 + 6033 6151 156286 118 chain 549676 chr11 135006516 + 95359490 95365515 L1PA2 6032 - 5 6032 1488 1752 4 1 526 0 2 601 0 4 2885 2 1 255 chain 34980 chr11 135006516 + 95372992 95373455 MER9a3 513 - 21 513 76211 51 6 7 97 4 25 134 0 1 21 1 0 23 0 5 108 0 2 18 chain 17019 chr11 135006516 + 95404442 95404770 L1PA15 4387 - 21 340 135544 10 1 0 26 5 0 15 5 4 6 0 9 14 2 1 11 17 14 49 4 0 22 1 0 55 1 0 23 12 11 49 chain 46531 chr11 135006516 + 95426177 95426869 L1PA16 3655 + 2947 3619 61569 33 0 2 143 0 8 71 41 32 54 2 0 273 11 0 15 3 0 15 15 10 16 chain 19803 chr11 135006516 + 95447687 95447976 L1PA8 5853 - 0 284 127806 93 1 0 19 3 2 42 20 19 70 2 0 39 chain 26914 chr11 135006516 + 95453079 95453388 AluY 311 + 0 307 96578 118 4 0 162 0 2 25 chain 3174 chr11 135006516 + 95483570 95483771 MLT1G 592 + 381 567 221444 15 27 25 14 93 81 14 8 7 30 chain 442762 chr11 135006516 + 95539420 95544754 L1PA5 6144 + 0 6144 8967 135 11 25 310 7 9 61 1 2 221 0 1 4 1 0 39 17 0 7 1 18 34 0 2 77 0 4 43 0 2 175 9 0 621 0 2 402 2 0 157 0 12 67 0 4 327 0 2 450 0 3 1131 0 4 294 9 7 31 11 775 110 0 2 176 0 5 393 chain 25485 chr11 135006516 + 95547521 95547823 AluSp 311 - 9 311 102292 302 chain 7460 chr11 135006516 + 95561541 95561646 Tigger3a 397 - 136 238 174401 50 4 1 51 chain 486633 chr11 135006516 + 95603910 95609426 L1PA4 6152 - 9 5666 7491 450 1 0 152 1 0 239 0 5 462 1 115 348 0 4 8 0 4 551 5 3 251 0 9 295 0 7 17 0 3 123 0 2 61 1 2 643 0 1 442 1 0 710 1 0 165 3 0 585 chain 4212 chr11 135006516 + 95620513 95620567 MLT1A0 366 + 253 314 204405 48 0 7 6 chain 3020 chr11 135006516 + 95651947 95651986 MamSINE1 258 + 184 222 224627 30 1 0 8 chain 11236 chr11 135006516 + 95659088 95659299 MER2 342 + 37 278 155275 25 0 1 5 36 66 106 12 11 27 chain 266645 chr11 135006516 + 95669495 95673328 HERVK22-int 3844 + 0 3470 15356 43 3 0 15 0 1 53 0 2 673 0 1 769 0 2 148 0 1 193 0 1 143 0 1 37 0 5 229 321 0 89 7 11 627 1 0 74 1 0 6 1 0 17 2 1 34 5 7 15 2 0 39 40 35 18 2 0 16 27 15 10 2 0 6 99 74 17 15 9 28 1 0 5 chain 120571 chr11 135006516 + 95681159 95682745 THE1B-int 1605 - 0 1605 30850 95 0 1 243 0 1 180 0 1 15 1 0 30 1 0 4 0 1 337 3 4 121 11 2 104 25 50 416 chain 21387 chr11 135006516 + 95715955 95716455 Tigger3b 1229 + 54 588 122562 40 187 204 32 0 3 133 0 3 50 8 0 22 0 5 6 0 3 6 1 12 15 chain 26661 chr11 135006516 + 95740915 95741203 L1PA2 6032 + 5744 6032 97449 288 chain 3794 chr11 135006516 + 95753629 95753673 MER5A1 166 - 10 54 210479 44 chain 20549 chr11 135006516 + 95803230 95803467 AluY 311 + 57 296 125473 75 0 1 6 0 1 156 chain 16149 chr11 135006516 + 95851415 95851747 THE1D 372 + 2 372 137901 50 14 30 29 11 13 20 74 94 134 chain 24640 chr11 135006516 + 95872367 95872654 AluY 311 + 8 296 106780 124 0 1 163 chain 42266 chr11 135006516 + 95913911 95914382 LTR7 482 - 8 482 66310 90 0 2 318 0 1 63 chain 23686 chr11 135006516 + 95941795 95942085 L1PBa 3878 + 583 871 112113 187 2 0 101 chain 28120 chr11 135006516 + 95973448 95973751 AluYb8 318 + 16 318 92573 190 1 0 112 chain 2716 chr11 135006516 + 95981577 95981610 MER33 330 + 243 277 229938 6 0 1 27 chain 6076 chr11 135006516 + 95983540 95983705 L1MA5A 2387 - 11 157 184607 6 7 0 6 0 5 16 53 37 11 1 0 65 chain 39665 chr11 135006516 + 96003948 96004469 MLT2A2 560 + 26 560 69804 20 1 0 20 0 2 323 10 22 36 1 0 41 0 1 69 chain 6811 chr11 135006516 + 96004494 96004573 THE1C-int 1605 + 1519 1598 178868 79 chain 28992 chr11 135006516 + 96004580 96004951 THE1C 375 + 0 375 89026 15 0 1 170 1 0 124 0 5 35 1 0 25 chain 37788 chr11 135006516 + 96018425 96019071 L1PA11 4918 + 3952 4578 72433 64 0 5 28 1 0 6 12 13 55 13 14 176 0 4 11 8 0 60 15 14 5 2 0 67 2 0 14 1 0 20 4 0 9 47 37 13 2 0 11 chain 21232 chr11 135006516 + 96055591 96055865 AluY 311 + 11 290 123090 31 0 6 82 1 2 128 7 5 25 chain 240088 chr11 135006516 + 96078085 96080754 L1PA4 6152 - 1 2672 16770 836 0 1 44 0 1 1789 chain 72947 chr11 135006516 + 96081793 96082658 L1PA11 4918 - 915 1790 47046 459 5 15 401 chain 36619 chr11 135006516 + 96082658 96083258 L1PA11 4918 + 4017 4578 73987 132 0 1 33 0 1 143 1 0 5 1 0 56 7 6 13 2 1 66 2 0 10 93 55 10 0 5 13 2 0 11 chain 29776 chr11 135006516 + 96101290 96101748 Tigger1 2417 - 945 1407 85566 67 21 24 89 2 0 126 21 20 30 1 2 74 3 6 24 chain 67760 chr11 135006516 + 96131703 96132468 L1PA5 6144 - 5 785 49341 141 0 14 178 0 1 446 chain 557827 chr11 135006516 + 96138784 96144829 L1PA2 6032 - 0 6030 521 1504 1 0 1473 1 0 3009 13 0 44 chain 55213 chr11 135006516 + 96149011 96150098 L1MA3 4352 + 0 866 55576 14 14 8 15 5 6 53 2 1 59 1 0 19 5 0 105 1 0 64 18 20 5 2 0 77 0 5 40 256 9 54 1 0 85 0 37 97 2 0 93 chain 6388 chr11 135006516 + 96154956 96155099 MER2 342 + 177 320 182111 69 53 53 21 chain 16390 chr11 135006516 + 96188039 96188308 L1PA16 3655 - 77 336 137237 39 26 14 45 22 24 137 chain 8918 chr11 135006516 + 96189037 96189194 MSTA 426 + 18 193 166043 66 30 48 51 1 0 4 0 1 5 chain 442922 chr11 135006516 + 96220054 96226273 L1PA6 6164 + 56 6162 8959 109 49 50 16 30 31 50 255 48 12 3 0 22 31 31 24 19 0 59 0 1 4 21 15 37 80 4 17 14 14 16 17 22 104 21 0 56 0 17 131 25 44 57 21 183 232 0 1 13 5 7 447 0 1 402 0 1 63 0 4 392 0 4 169 1 0 211 8 8 11 0 1 620 4 0 682 0 1 547 1 2 266 1 0 516 1 2 142 1 2 5 1 0 169 0 2 9 chain 15483 chr11 135006516 + 96239879 96240127 LTR46-int 301 + 56 299 139949 95 2 4 41 13 14 52 18 10 27 chain 47926 chr11 135006516 + 96247047 96247563 L1PA2 6032 + 5503 6019 60538 516 chain 113769 chr11 135006516 + 96250756 96252418 L1PA13 3608 - 120 1837 33156 22 6 5 13 2 0 7 2 0 44 16 80 43 2 1 113 1 0 24 6 11 191 24 18 16 1 2 281 8 0 59 0 5 206 0 3 15 1 0 24 5 8 50 3 0 133 0 1 141 7 11 119 6 0 71 chain 68773 chr11 135006516 + 96261861 96262972 L1PA13 3608 + 113 1191 48909 22 3 1 5 1 0 21 2 1 14 3 0 24 28 17 68 7 5 125 1 0 12 1 0 17 2 0 16 6 2 18 1 0 5 18 16 14 2 0 17 1 0 64 1 2 4 1 0 28 2 0 264 4 3 147 14 14 57 0 4 71 chain 507709 chr11 135006516 + 96278173 96284318 L1PA6 6164 + 0 6145 6349 46 25 22 173 14 13 370 10 11 52 0 1 272 12 3 56 1 0 249 0 4 570 2 0 491 0 1 578 0 1 4 1 0 260 2 3 6 1 0 84 0 1 354 0 5 680 0 1 27 0 1 142 0 1 297 0 1 535 1 0 830 chain 6969 chr11 135006516 + 96442411 96442489 L1PA2 6032 + 5952 6030 177689 78 chain 81786 chr11 135006516 + 96457132 96458100 LTR5_Hs 974 + 0 974 42851 17 0 4 438 0 4 386 10 9 53 1 0 63 chain 40366 chr11 135006516 + 96458634 96459085 LTR7 482 + 0 482 68783 230 0 31 221 chain 295133 chr11 135006516 + 96459087 96462957 HERVH-int 3825 + 0 3816 13694 212 4 15 305 133 0 38 1 0 7 1 0 12 4 0 14 7 1 15 1 0 12 3 0 8 7 10 7 1 0 7 39 0 35 88 1 15 21 0 15 2 1 26 0 2 20 0 1 415 0 1 31 15 0 215 0 1 239 8 35 165 0 1 1146 0 2 90 8 218 478 chain 5350 chr11 135006516 + 96459637 96459736 HERVH-int 3825 + 436 532 191549 52 2 0 12 21 20 12 chain 39532 chr11 135006516 + 96464223 96464661 LTR7 482 + 0 469 69982 263 1 32 174 chain 4190 chr11 135006516 + 96497188 96497237 MER92C 513 - 75 124 204703 49 chain 5634 chr11 135006516 + 96507055 96507280 LTR12D 1347 + 501 751 188726 35 70 25 6 2 0 17 60 132 35 chain 236253 chr11 135006516 + 96507980 96510965 HERV9-int 5642 + 0 2987 16962 384 0 5 403 1 0 71 0 85 27 0 1 109 80 0 21 3 0 4 1 0 466 1 4 5 14 0 139 0 6 810 0 2 236 12 10 142 0 1 56 chain 51486 chr11 135006516 + 96514226 96514848 LTR12_ 688 + 0 688 57980 80 0 66 20 1 0 81 0 1 440 chain 4863 chr11 135006516 + 96540984 96541053 L1PB1 5432 - 20 86 196649 8 1 0 13 1 0 21 1 0 24 chain 54012 chr11 135006516 + 96541214 96542026 L1PB 1623 + 800 1575 56353 383 1 2 120 4 0 141 1 0 7 2 1 30 1 0 4 3 0 13 5 1 12 2 1 9 52 29 22 chain 155229 chr11 135006516 + 96548791 96550493 L1PA3long 6157 - 11 1714 23956 101 0 1 1601 chain 26623 chr11 135006516 + 96554888 96555235 L1PA7 6471 + 6116 6465 97581 197 6 13 122 0 1 10 6 0 6 chain 156658 chr11 135006516 + 96594493 96596467 L1P3 4156 - 21 1992 23778 20 2 1 7 2 0 98 1 0 237 3 0 227 0 4 301 4 0 6 0 4 458 0 2 8 9 7 117 0 1 379 1 0 94 chain 118407 chr11 135006516 + 96596493 96597848 L1PA4 6152 - 0 1355 31644 8 0 1 245 1 0 1101 chain 66232 chr11 135006516 + 96599050 96599880 L1PA6 6164 + 5025 5847 49991 572 16 8 242 chain 25008 chr11 135006516 + 96599880 96600193 L1PA6 6164 + 5848 6161 104743 313 chain 14328 chr11 135006516 + 96618767 96618972 MER30 238 + 8 230 143463 89 15 32 101 chain 548719 chr11 135006516 + 96642827 96648820 L1PA2 6032 - 34 6032 1612 1428 0 1 403 0 2 2084 0 2 1767 1 0 238 0 1 72 chain 452933 chr11 135006516 + 96658501 96664670 L1PA7 6471 - 5 6456 8655 7 4 0 137 0 4 6 2 0 691 6 5 215 0 1 414 0 1 313 0 4 349 11 4 1227 11 5 63 0 6 241 27 0 367 3 4 550 1 0 79 5 18 51 1 0 197 7 6 433 1 22 143 15 15 19 266 548 45 110 109 152 chain 166638 chr11 135006516 + 96684140 96686180 L1PA7 6471 + 4427 6467 22442 227 6 17 278 1 0 61 8 11 142 3 4 455 9 5 307 1 0 32 1 0 175 4 0 320 4 0 6 chain 23252 chr11 135006516 + 96732708 96733060 THE1B 368 + 0 366 114436 36 1 0 8 6 21 110 2 1 100 25 26 64 chain 8303 chr11 135006516 + 96754279 96754382 L1MA5 2750 + 2417 2520 169377 103 chain 66188 chr11 135006516 + 96774832 96775561 L1PA3long 6157 - 0 729 50010 729 chain 38347 chr11 135006516 + 96780763 96781223 L1PA5 6144 - 3890 4343 71655 146 8 1 306 chain 331276 chr11 135006516 + 96781223 96785059 L1PA5 6144 + 2281 6139 12154 33 0 1 261 0 4 582 1 2 12 2 0 103 0 1 120 0 1 108 0 1 167 1 2 662 0 4 390 0 3 276 1 0 4 0 1 104 1 0 171 2 1 516 4 2 85 0 10 47 1 2 182 chain 89660 chr11 135006516 + 96798779 96799789 L1PA4 6152 - 0 1018 39761 6 0 5 249 1 0 590 0 4 164 chain 13698 chr11 135006516 + 96801988 96802143 L1PA4 6152 - 0 154 145603 147 1 0 7 chain 200854 chr11 135006516 + 96805851 96808016 L1PA2 6032 + 3868 6032 19153 1400 1 0 764 chain 51413 chr11 135006516 + 96822141 96822716 L1PA4 6152 - 9 583 58026 358 1 0 216 chain 22719 chr11 135006516 + 96843672 96844295 L1MA5 2750 + 2200 2611 116989 126 217 5 33 6 9 19 10 9 47 52 51 65 1 0 47 chain 29742 chr11 135006516 + 96848823 96849141 AluYb8 318 + 0 317 85686 206 1 0 111 chain 3001 chr11 135006516 + 96881965 96882001 MER110A 451 - 43 79 225028 36 chain 54120 chr11 135006516 + 96882026 96882686 LTR12_ 688 + 24 688 56280 32 0 4 240 0 2 5 2 0 381 chain 2865 chr11 135006516 + 96898765 96898795 LTR16A1 462 + 432 462 227603 30 chain 24132 chr11 135006516 + 96906703 96906987 L1PA2 6032 + 5746 6029 109575 98 1 0 22 5 0 7 1 6 150 chain 556203 chr11 135006516 + 96911161 96917278 L1PA3long 6157 - 0 6147 701 2103 0 29 77 0 3 478 1 0 2027 1 0 1430 chain 259548 chr11 135006516 + 96923841 96926783 L1PA4 6152 + 3184 6143 15729 279 1 0 506 0 13 342 0 1 131 2 1 847 0 4 76 0 1 758 chain 128458 chr11 135006516 + 96947416 96948983 LTR12C 1709 + 0 1709 28464 104 5 4 383 0 1 320 0 40 259 1 0 6 2 0 107 0 4 235 44 14 57 0 131 44 chain 43302 chr11 135006516 + 96958847 96959317 L1PA2 6032 + 5561 6031 65045 470 chain 6402 chr11 135006516 + 96963264 96963594 MLT1B 390 + 27 348 182005 17 199 190 12 2 0 6 21 23 73 chain 120630 chr11 135006516 + 96973038 96974477 L1PA4 6152 - 0 3853 30830 162 11 13 156 0 1 435 0 1 195 3 2402 280 0 12 182 1 0 14 chain 21966 chr11 135006516 + 96977256 96977487 L1PA2 6032 - 4 235 120368 231 chain 109123 chr11 135006516 + 97004749 97006044 L1PA7 6471 + 5153 6470 34412 195 0 21 252 1 0 58 1 2 624 4 5 160 chain 74996 chr11 135006516 + 97013274 97014099 L1PA4 6152 - 9 834 46016 825 chain 24732 chr11 135006516 + 97022645 97022939 AluSc5 308 - 6 293 106264 8 7 0 279 chain 16294 chr11 135006516 + 97097453 97097676 L1PA8 5853 - 0 219 137493 93 1 0 19 2 1 52 1 0 9 2 1 44 chain 16826 chr11 135006516 + 97098542 97098734 L1PA5 6144 - 0 192 136048 192 chain 3056 chr11 135006516 + 97107762 97107794 THE1B 368 - 332 364 223888 32 chain 14412 chr11 135006516 + 97159115 97159342 L1PA8 5853 - 0 224 143175 20 0 1 71 2 1 19 15 14 34 1 0 14 2 1 49 chain 71304 chr11 135006516 + 97159347 97160274 L1PA8 5853 + 4699 5640 47793 166 0 6 61 0 1 54 0 4 8 0 3 85 0 1 75 14 17 222 18 18 69 4 3 71 7 6 39 2 0 32 chain 43627 chr11 135006516 + 97162075 97162585 MER9a2 513 + 0 513 64656 58 2 1 251 0 4 199 chain 281443 chr11 135006516 + 97170667 97175101 L1PA5 6144 + 2508 6128 14566 572 1220 400 200 0 3 975 1 0 640 0 5 699 1 0 126 chain 94060 chr11 135006516 + 97171386 97172459 L1PA4 6152 - 9 1089 38254 833 0 9 7 6 4 227 chain 378832 chr11 135006516 + 97188987 97193925 HERVL-int 5654 + 0 5654 10796 235 10 12 105 14 15 48 0 4 26 7 487 18 0 4 329 1 11 238 3 4 67 0 4 117 18 20 161 0 2 220 0 203 218 0 1 297 0 7 13 1 0 214 0 3 154 2 0 180 0 1 44 8 10 442 0 4 48 0 2 124 0 1 490 0 1 478 8 9 40 20 1 110 16 17 62 6 7 96 18 17 10 1 2 221 chain 22021 chr11 135006516 + 97252940 97253255 THE1B 368 - 42 368 120135 33 7 6 95 2 0 18 1 0 109 6 21 44 chain 13948 chr11 135006516 + 97279381 97279736 THE1B 368 - 0 361 144761 40 27 26 50 90 96 21 31 32 96 chain 41065 chr11 135006516 + 97292899 97293586 L1PA11 4918 + 3906 4578 67817 81 10 17 327 16 6 45 38 39 54 2 0 7 3 6 15 9 5 9 3 0 5 2 0 8 18 16 8 1 0 13 2 0 11 chain 191232 chr11 135006516 + 97309273 97311952 L1PA5 6144 + 3170 5981 19940 32 34 48 23 0 2 206 1 5 23 1 0 119 0 2 51 16 13 410 0 1 214 0 1 372 1 0 164 4 5 433 12 10 79 18 21 12 0 1 10 0 3 199 4 0 7 18 125 156 43 47 17 chain 46960 chr11 135006516 + 97327236 97327752 L1PA3long 6157 - 717 1234 61244 365 0 1 151 chain 63430 chr11 135006516 + 97327761 97328461 L1PA3long 6157 + 5456 6156 51271 700 chain 25861 chr11 135006516 + 97379254 97379537 AluYc 301 + 0 283 100601 283 chain 57180 chr11 135006516 + 97382897 97383632 MER4E 760 - 0 760 54417 176 0 1 201 0 7 66 0 4 36 1 0 4 0 1 34 0 1 63 1 0 123 8 21 22 chain 76491 chr11 135006516 + 97389723 97390583 L1PA4 6152 + 5275 6136 45215 613 1 0 150 0 1 59 0 1 37 chain 56335 chr11 135006516 + 97392659 97393407 MER4E 760 - 8 760 54945 269 3 7 23 0 1 6 1 0 63 16 12 102 1 0 4 0 1 98 0 3 145 0 1 17 chain 308005 chr11 135006516 + 97410164 97414211 L1PA8 5853 + 1813 5849 13086 209 22 0 50 9 1 407 3 7 236 17 18 74 0 3 51 1 2 63 0 4 44 0 2 75 3 0 135 0 4 22 4 0 118 0 3 249 0 1 48 1 4 18 8 6 20 0 2 901 1 0 5 0 1 10 0 1 66 0 1 13 1 0 300 0 4 18 0 5 524 5 6 20 1 0 46 2 0 69 1 0 8 0 6 6 21 14 27 2 1 19 1 0 34 4 0 55 chain 33436 chr11 135006516 + 97454635 97455062 LTR2 463 - 0 463 78507 33 0 6 235 7 27 102 0 10 50 chain 11434 chr11 135006516 + 97466049 97466402 L1PB1 5432 + 5117 5430 154550 21 1 0 8 2 1 9 19 13 49 25 23 38 13 4 13 3 0 6 15 6 15 45 40 7 1 0 22 1 0 30 1 0 4 1 0 4 chain 16727 chr11 135006516 + 97480529 97480848 HUERS-P2-int 2744 - 0 302 136326 29 2 0 12 0 1 5 5 0 8 1 0 38 3 0 36 1 0 14 26 22 14 4 11 10 6 0 11 1 0 22 4 2 67 chain 220397 chr11 135006516 + 97503975 97506546 L1PA6 6164 - 4 2576 17855 143 14 14 597 3 4 1448 0 3 5 3 0 358 chain 53112 chr11 135006516 + 97507794 97508444 LTR6A 649 + 0 648 56955 285 1 0 150 6 5 208 chain 111031 chr11 135006516 + 97510958 97512398 L1PA7 6471 + 5088 6461 33923 487 0 1 16 7 11 18 1 0 685 2 3 88 72 0 64 chain 5646 chr11 135006516 + 97531655 97531738 L1MA10 1535 - 1415 1508 188601 28 6 16 49 chain 8878 chr11 135006516 + 97538654 97538781 LTR12C 1709 + 766 877 166241 7 15 0 64 1 0 40 chain 12394 chr11 135006516 + 97552677 97552844 L1MA2 4263 - 3589 3759 150657 11 0 2 13 5 4 4 0 1 75 0 1 59 chain 54296 chr11 135006516 + 97563947 97564600 L1PA7 6471 - 24 676 56162 133 2 1 518 chain 93069 chr11 135006516 + 97564612 97565737 L1PA7 6471 + 4565 5739 38637 78 0 1 592 3 55 7 1 0 12 0 1 43 1 0 270 3 0 115 chain 73978 chr11 135006516 + 97588144 97589292 LTR12D 1347 - 0 1347 46526 96 12 1 151 0 97 84 0 1 206 3 22 15 0 150 191 97 26 39 6 19 13 0 1 11 29 29 153 9 5 7 0 4 26 chain 13753 chr11 135006516 + 97609111 97609437 L1PB1 5432 - 10 311 145426 17 2 1 13 1 0 21 1 0 24 0 2 12 1 0 5 7 5 14 15 6 6 1 0 16 1 0 44 1 0 15 2 1 42 43 36 4 1 0 17 chain 48781 chr11 135006516 + 97612559 97613148 L1PA6 6164 - 2 588 59888 6 4 0 146 1 0 17 2 4 413 chain 26542 chr11 135006516 + 97615617 97616529 LTR12C 1709 - 264 939 97873 4 0 1 23 553 270 20 0 47 185 1 0 58 1 0 67 chain 924 chr11 135006516 + 97615986 97616031 LTR12C 1709 - 996 1041 199898 45 chain 635 chr11 135006516 + 97616133 97616163 LTR12C 1709 - 623 653 177873 30 chain 21706 chr11 135006516 + 97634567 97634851 AluY 311 + 26 299 121366 107 21 10 156 chain 30427 chr11 135006516 + 97645911 97646229 AluYb8 318 - 0 318 83630 318 chain 371472 chr11 135006516 + 97650488 97655002 L1PA7 6471 - 13 4548 11042 144 0 2 31 0 1 188 0 2 466 0 3 43 0 3 265 0 5 751 0 2 118 1 0 425 0 3 453 0 4 448 2 3 452 1 5 88 8 0 233 9 8 121 0 1 267 chain 83941 chr11 135006516 + 97655006 97656073 MER11B 1079 + 0 1062 41933 220 1 6 335 3 0 180 10 0 29 1 3 45 2 3 51 0 1 178 1 0 11 chain 30512 chr11 135006516 + 97659605 97660053 MLT2A1 477 - 0 475 83404 51 3 41 71 24 22 102 2 0 21 4 1 16 7 3 147 chain 99935 chr11 135006516 + 97660169 97661766 HERVL-int 5654 - 3378 4702 36801 953 1 0 4 1 2 91 0 3 53 304 36 87 22 14 81 chain 15996 chr11 135006516 + 97712575 97712799 Tigger2 2703 - 1654 1881 138363 97 12 15 115 chain 6936 chr11 135006516 + 97712870 97713075 Tigger2b_Pri 1066 - 0 201 177928 16 37 38 39 6 0 17 46 47 44 chain 11697 chr11 135006516 + 97716914 97717091 L1MA4 2864 + 2526 2693 153486 117 2 0 32 4 1 10 5 0 7 chain 39407 chr11 135006516 + 97721745 97722280 MLT2A2 560 + 2 560 70155 178 1 0 218 4 15 53 6 19 15 1 0 5 0 1 54 chain 14054 chr11 135006516 + 97749184 97749402 MLT2A2 560 - 294 511 144368 48 30 26 5 0 3 135 chain 397040 chr11 135006516 + 97793714 97798400 L1PA4 6152 + 0 6151 10197 271 0 1 308 1 0 120 0 2 150 52 1 753 0 1496 391 6 5 442 0 1 261 0 2 149 1 0 994 0 17 787 chain 149426 chr11 135006516 + 97820416 97822278 L1PA7 6471 - 4 1865 24699 371 0 1 252 6 1 49 10 12 141 0 1 18 1 0 418 6 7 4 1 0 402 0 1 183 chain 19075 chr11 135006516 + 97833868 97834136 L1PA8 5853 - 0 262 129892 91 9 8 13 2 1 51 1 0 10 1 0 71 2 0 17 chain 49644 chr11 135006516 + 97846682 97847578 LTR10C 591 - 0 591 59280 81 0 2 164 308 0 229 0 1 114 chain 490388 chr11 135006516 + 97882816 97889233 L1PA7 6471 + 3 6466 7345 333 15 16 59 20 21 20 10 6 484 0 16 312 0 4 200 12 13 399 4 0 463 13 14 65 0 3 88 0 2 38 20 12 360 1 0 133 5 14 18 0 4 155 8 0 135 1 0 4 0 1 89 1 2 11 4 0 46 0 2 25 0 12 72 1 0 250 0 1 27 0 3 66 0 3 928 16 3 55 5 6 136 9 23 246 0 1 46 1 2 111 9 1 63 0 14 239 1 4 257 1 0 148 0 2 8 28 26 143 chain 2855 chr11 135006516 + 97904807 97904841 L1PB1 5432 - 1930 1964 227764 34 chain 9455 chr11 135006516 + 97904842 97904956 L1PB1 5432 - 1798 1912 163291 114 chain 3757 chr11 135006516 + 97909924 97909964 MADE1 96 - 50 90 211000 40 chain 219583 chr11 135006516 + 97935410 97939757 MER61-int 3695 - 367 3695 17914 12 0 1 134 5 8 7 2 0 9 9 5 209 47 48 32 1 0 4 6 30 27 1023 6 21 7 10 41 1 0 113 3 0 92 2 1 88 21 21 98 1 0 162 0 2 15 7 11 7 0 4 289 74 74 123 0 5 80 9 11 56 0 5 33 1 0 297 0 7 188 18 19 72 15 13 39 0 4 17 9 12 217 0 2 110 0 1 23 25 11 65 0 1 4 8 5 54 11 9 68 76 37 109 1 0 50 chain 28864 chr11 135006516 + 97936465 97936926 LTR8 732 + 269 730 89604 44 0 1 93 75 72 192 1 3 56 chain 5154 chr11 135006516 + 97965165 97965221 L1PA7 6471 + 5256 5312 193506 56 chain 96664 chr11 135006516 + 97965221 97966375 L1PA7 6471 + 5314 6469 37653 136 1 0 45 6 7 119 1 3 708 1 0 137 chain 22803 chr11 135006516 + 97982615 97982899 L1PA7 6471 + 5669 5950 116558 233 4 1 47 chain 43072 chr11 135006516 + 97982908 97983410 L1PA7 6471 + 5965 6467 65332 502 chain 304163 chr11 135006516 + 97987543 97991366 L1PA8 5853 - 0 3803 13235 10 0 5 42 8 0 36 1 0 16 1 0 52 1 0 13 1 0 71 2 0 44 1 0 548 0 2 6 0 2 602 0 1 62 2 0 379 1 2 88 1 2 159 1 3 426 51 1 182 0 46 171 1 0 5 1 0 5 1 2 380 5 1 146 1 0 263 8 1 29 chain 7253 chr11 135006516 + 98005689 98005792 L1PREC2 3366 + 506 608 175749 81 6 5 16 chain 35904 chr11 135006516 + 98006588 98007087 LTR12F 595 + 0 595 75009 84 24 0 16 0 119 99 1 0 48 0 1 78 5 6 144 chain 6205 chr11 135006516 + 98016764 98016865 THE1D 372 - 276 362 183548 56 12 0 25 3 0 5 chain 2957 chr11 135006516 + 98019782 98019817 Tigger3b 1229 - 1140 1175 225940 35 chain 22346 chr11 135006516 + 98022600 98022956 THE1B 368 + 0 368 118723 64 13 14 121 42 52 24 0 1 92 chain 108839 chr11 135006516 + 98071180 98072507 L1PA8A 6298 - 8 1340 34479 716 0 1 80 5 8 316 3 4 207 chain 11055 chr11 135006516 + 98075026 98075286 L1PB 1623 + 1325 1576 155988 85 0 2 34 1 0 7 110 100 23 chain 10367 chr11 135006516 + 98108511 98108646 L1PA17 2846 + 2338 2474 158845 7 0 1 31 0 1 6 1 0 90 chain 58279 chr11 135006516 + 98111153 98111903 LTR12 884 + 0 884 53822 78 4 136 164 2 0 425 16 20 61 chain 13975 chr11 135006516 + 98140402 98140751 THE1C 375 - 25 375 144668 105 0 3 5 72 69 14 20 0 10 22 42 16 21 22 64 chain 8629 chr11 135006516 + 98144517 98144647 THE1A 353 + 0 129 167590 15 6 7 8 1 0 79 2 1 19 chain 136958 chr11 135006516 + 98144650 98146163 L1PA2 6032 - 0 1519 26649 147 4 5 720 0 4 228 0 1 414 chain 128974 chr11 135006516 + 98146163 98147573 L1PA2 6032 + 3106 4516 28301 1410 chain 8236 chr11 135006516 + 98163564 98163665 MLT2A2 560 + 0 105 169748 64 0 1 20 0 3 17 chain 5357 chr11 135006516 + 98170247 98170336 L1PB4 2604 - 106 195 191464 49 4 0 6 5 9 25 chain 11720 chr11 135006516 + 98170625 98170855 L1PB4 2604 + 2005 2220 153380 86 70 53 55 0 2 19 chain 538320 chr11 135006516 + 98195629 98201648 L1PA3long 6157 - 1 6153 3100 1953 0 1 257 0 1 553 0 1 1071 1 0 1270 0 2 143 0 128 69 1 0 36 0 1 516 0 1 149 chain 51452 chr11 135006516 + 98202305 98202885 L1PA4 6152 - 23 603 58003 580 chain 316318 chr11 135006516 + 98212854 98216351 L1PA3long 6157 - 0 3497 12749 159 0 1 91 0 1 921 0 1 681 7 0 361 0 3 1217 0 1 60 chain 75306 chr11 135006516 + 98216351 98217176 L1PA3long 6157 + 1834 2659 45728 825 chain 21125 chr11 135006516 + 98225806 98226069 AluY 311 + 21 288 123471 31 4 7 73 0 1 155 chain 85809 chr11 135006516 + 98263333 98264418 L1PA8 5853 + 4779 5853 41226 37 0 1 193 2 0 74 2 3 54 4 0 423 1 0 43 3 1 69 1 0 10 10 9 42 4 3 21 1 0 91 chain 39756 chr11 135006516 + 98265081 98265608 LTR10F 562 - 0 562 69677 24 0 3 5 2 0 158 6 8 23 0 1 109 1 4 36 0 28 163 chain 105075 chr11 135006516 + 98266987 98268251 Harlequin-int 5206 - 3097 4362 35484 173 2 0 76 0 3 97 0 1 411 0 1 61 2 0 442 chain 3974 chr11 135006516 + 98273558 98273629 MADE1 96 - 8 96 207779 22 1 2 19 5 21 24 chain 8374 chr11 135006516 + 98273801 98273996 MER1B 344 - 0 231 169003 63 80 115 38 0 1 14 chain 52420 chr11 135006516 + 98290010 98290726 LTR12 884 - 15 884 57340 142 0 103 248 2 0 11 0 91 27 1 0 156 38 1 65 1 0 25 chain 1829 chr11 135006516 + 98290597 98290635 LTR12 884 - 686 728 147343 29 5 9 4 chain 225893 chr11 135006516 + 98292185 98295237 HERV9-int 5642 - 856 5642 17535 150 0 1795 74 21 27 26 2 3 48 5 6 434 0 3 77 1 2 1031 1 0 3 82 0 15 80 0 88 0 85 120 5 4 81 0 4 106 5 4 157 11 0 51 0 1 5 2 14 194 1 2 176 chain 5538 chr11 135006516 + 98295710 98295775 LTR12 884 - 530 595 189679 65 chain 4324 chr11 135006516 + 98305635 98305685 L1P1 4361 - 1281 1331 201794 50 chain 2340 chr11 135006516 + 98305685 98305772 L1PA2 6032 + 4302 4389 44888 87 chain 181387 chr11 135006516 + 98305772 98307755 L1PA2 6032 + 4047 6030 20859 1983 chain 21464 chr11 135006516 + 98307755 98308553 L1PA2 6032 + 5232 6030 44888 798 chain 59320 chr11 135006516 + 98317299 98317961 L1PA4 6152 + 5488 6151 53211 658 0 1 4 chain 99685 chr11 135006516 + 98324598 98326001 HUERS-P2-int 2744 - 0 1397 36858 29 2 0 12 2 0 5 2 0 8 2 1 11 7 9 16 3 0 37 1 0 5 9 43 24 15 0 33 2 0 45 6 7 19 12 11 82 1 2 90 1 0 4 19 0 36 1 0 79 0 6 783 chain 9610 chr11 135006516 + 98329414 98329754 MSTA 426 + 0 392 162540 100 149 170 26 45 76 20 chain 16568 chr11 135006516 + 98334423 98334705 L1PA8 5853 + 5610 5853 136738 56 2 1 15 1 0 11 1 0 9 0 1 37 2 1 18 2 1 22 1 0 36 36 2 33 chain 10602 chr11 135006516 + 98344095 98344230 MER85 139 - 0 134 157816 29 1 0 105 chain 5566 chr11 135006516 + 98359622 98359689 MER51B 395 - 11 78 189423 67 chain 5253 chr11 135006516 + 98364700 98364850 MER4A1 472 - 149 328 192491 22 29 26 14 34 66 51 chain 51711 chr11 135006516 + 98380341 98381448 L1PB1 5432 - 33 795 57812 8 1 0 21 1 0 26 2 0 13 7 4 30 13 1 15 1 0 45 1 0 15 2 1 46 21 18 10 1 0 8 1 0 23 17 0 10 305 2 285 0 1 6 1 2 172 chain 130600 chr11 135006516 + 98393417 98394899 L1PA5 6144 - 5 1493 27943 969 0 1 37 1 6 475 chain 28525 chr11 135006516 + 98401954 98402371 MER4A1 472 - 14 441 91080 55 10 12 90 3 5 54 15 16 9 0 1 126 0 1 17 1 4 37 chain 24678 chr11 135006516 + 98406116 98406416 AluY 311 + 4 297 106562 214 7 0 79 chain 403081 chr11 135006516 + 98416965 98422704 L1PB1 5432 + 26 5414 9996 105 0 2 6 3 0 16 5 6 383 3 0 8 11 12 58 1 0 4 1 2 128 0 1 524 0 2 114 11 0 295 0 3 15 4 2 4 0 1 147 0 1 6 1 0 5 8 4 260 3 5 343 4 0 7 2 7 44 1 5 93 0 1 189 1 0 44 13 14 115 2 1 5 0 1 50 0 1 408 0 2 87 0 1 104 0 1 59 2 0 265 3 1 301 0 2 89 10 9 229 1 2 305 303 0 97 0 1 75 3 2 11 12 0 22 1 0 9 1 0 9 17 11 37 3 0 13 6 5 14 1 0 41 8 7 12 4 0 3 9 0 28 2 0 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 10 chain 83406 chr11 135006516 + 98475076 98476004 L1PA3long 6157 + 5229 6157 42155 928 chain 28208 chr11 135006516 + 98476969 98477272 AluYb9 318 - 18 318 92275 174 3 0 126 chain 23387 chr11 135006516 + 98480780 98481095 AluSc5 308 - 9 308 113723 8 10 0 61 14 8 222 chain 14297 chr11 135006516 + 98497258 98497615 LOR1b 457 + 42 435 143573 15 0 28 9 21 0 37 15 13 31 44 73 81 56 58 48 chain 142515 chr11 135006516 + 98517722 98519317 L1PA3long 6157 - 1915 3516 25658 296 5 6 449 0 5 845 chain 172752 chr11 135006516 + 98519317 98521219 L1PA3long 6157 + 4253 6157 21738 1880 0 1 18 0 1 4 chain 3949 chr11 135006516 + 98528797 98528846 MLT1A0 366 + 265 314 208150 49 chain 5436 chr11 135006516 + 98561177 98561239 THE1D-int 1627 + 886 948 190650 62 chain 141012 chr11 135006516 + 98570407 98572105 L1PA7 6471 + 4762 6469 25983 187 0 1 664 0 3 208 0 1 11 0 3 611 1 0 5 0 2 11 chain 22248 chr11 135006516 + 98579628 98579888 AluSc 308 + 11 271 119127 260 chain 460752 chr11 135006516 + 98583163 98589277 L1PA7 6471 - 10 6405 8371 80 44 27 35 1 0 4 6 7 334 0 1 229 9 0 123 2 1 286 27 9 81 1 0 4 1 2 19 0 2 62 0 9 197 3 2 158 1 2 4 1 0 507 0 2 374 19 21 84 0 1 603 0 2 453 0 1 16 9 13 708 0 2 397 0 1 43 1 0 155 0 1 53 18 17 141 1 0 119 3 24 142 35 110 28 2 0 7 5 7 15 5 15 147 48 245 118 11 10 135 chain 5711 chr11 135006516 + 98604617 98604696 LTR28 1034 + 245 324 188003 20 2 1 39 0 1 18 chain 86926 chr11 135006516 + 98616304 98617436 L1PA8 5853 + 4727 5853 40814 97 0 1 38 1 0 147 2 0 18 0 1 535 1 0 41 9 7 66 2 1 8 2 1 72 1 0 78 0 1 14 chain 469941 chr11 135006516 + 98618646 98624732 L1PA7 6471 + 31 6465 8039 170 13 12 116 23 193 44 2 3 130 14 127 165 9 8 259 0 40 189 1 4 7 3 0 127 0 1 125 0 1 7 6 5 501 0 2 203 0 9 160 2 6 43 0 3 4 0 1 464 0 8 199 0 1 60 7 12 44 0 2 36 2 1 408 0 1 787 0 3 612 18 0 93 0 1 8 0 1 90 3 2 4 0 1 91 0 4 250 4 5 575 2 0 6 chain 15319 chr11 135006516 + 98632926 98633112 MER61-int 3695 + 2194 2386 140428 24 0 6 162 chain 134654 chr11 135006516 + 98633112 98634704 LTR12C 1709 - 0 1709 27082 41 0 1 42 1 0 397 0 4 106 3 1 5 1 0 162 1 0 102 0 118 152 9 8 152 1 0 151 0 1 266 chain 101521 chr11 135006516 + 98640332 98641489 SVA_B 1603 - 12 1603 36393 561 0 361 113 0 1 39 1 40 280 1 0 149 0 34 13 chain 5124 chr11 135006516 + 98644429 98644491 L1MC 810 + 615 677 193835 62 chain 3044 chr11 135006516 + 98645028 98645122 L1MC2 1988 + 1886 1970 224120 23 47 37 24 chain 58705 chr11 135006516 + 98691134 98691797 L1P1 4361 - 33 694 53580 23 1 0 155 1 0 483 chain 37084 chr11 135006516 + 98691797 98692212 L1PA4 6152 + 5735 6151 73410 162 0 1 253 chain 3708 chr11 135006516 + 98752756 98752804 MLT2A2 560 - 0 52 211838 6 0 4 42 chain 22260 chr11 135006516 + 98777574 98777936 THE1B 368 + 10 368 119075 54 45 46 62 12 11 16 4 0 169 chain 3120 chr11 135006516 + 98779400 98779433 THE1B-int 1605 - 88 121 222559 33 chain 177599 chr11 135006516 + 98788959 98790953 L1PA4 6152 + 4158 6152 21201 287 0 1 926 1 0 17 0 1 572 1 0 190 chain 240240 chr11 135006516 + 98800192 98803330 HERVK22-int 3844 - 1 3833 16757 28 0 1 48 17 16 13 0 1 74 48 701 40 8 7 98 29 56 92 0 9 325 0 1 50 6 1 432 0 4 23 0 1 308 1 0 464 0 1 314 1 0 46 0 3 306 0 1 5 0 1 362 chain 45316 chr11 135006516 + 98815805 98816318 MER9a2 513 - 0 513 62698 513 chain 20928 chr11 135006516 + 98838288 98838513 AluYa5 310 - 0 225 124185 225 chain 124719 chr11 135006516 + 98843512 98845014 L1PA7 6471 - 2 1501 29471 8 2 0 61 15 16 681 1 0 82 1 0 651 chain 5821 chr11 135006516 + 98855471 98855590 L1MA1 4479 + 240 360 186928 29 30 28 52 0 3 8 chain 530380 chr11 135006516 + 98867182 98873313 L1PA5 6144 + 3 6144 4146 726 0 1 278 0 1 4 6 5 1010 0 1 47 0 1 302 0 1 201 0 1 620 2 0 300 1 0 269 0 1 151 1 0 699 1 0 181 5 0 278 0 1 490 0 2 316 0 1 90 6 16 147 chain 14145 chr11 135006516 + 98874165 98874477 THE1C 375 + 25 336 144052 22 1 2 20 46 47 70 44 47 14 8 2 87 chain 79610 chr11 135006516 + 98874576 98875626 L1PA8A 6298 - 7 1037 43774 287 4 3 129 8 0 67 0 1 230 1 4 70 0 7 20 0 4 127 26 0 81 chain 49084 chr11 135006516 + 98883905 98884452 L1PA4 6152 + 5600 6152 59682 541 0 5 6 chain 398949 chr11 135006516 + 98902498 98906860 L1PA3long 6157 - 0 4362 10138 4362 chain 7331 chr11 135006516 + 98912982 98913079 L1PA6 6164 + 6038 6135 175217 16 0 3 5 3 0 73 chain 10068 chr11 135006516 + 98913965 98914070 L1PA2 6032 - 102 207 160229 105 chain 9875 chr11 135006516 + 98914070 98914176 L1PA2 6032 + 5925 6031 161194 106 chain 79870 chr11 135006516 + 98944124 98945147 L1PA8 5853 - 0 1037 43654 93 1 0 18 1 0 48 3 1 13 8 7 63 3 1 45 1 0 40 0 3 63 0 21 217 1 0 28 1 0 376 chain 10410 chr11 135006516 + 98965715 98965847 L1PA7 6471 - 5 134 158642 7 3 0 122 chain 12511 chr11 135006516 + 98992721 98992871 L1PA5 6144 - 6 156 150202 150 chain 120362 chr11 135006516 + 99002000 99003666 L1PA10 4194 + 2448 4117 30916 44 16 15 121 16 18 30 13 17 32 16 19 5 1 0 444 3 4 199 7 0 44 1 4 638 1 0 35 chain 31902 chr11 135006516 + 99022373 99022755 L1PA7 6471 + 6049 6464 81007 202 0 31 38 0 1 26 1 2 115 chain 47231 chr11 135006516 + 99050785 99051407 LTR66 600 - 0 591 61020 17 6 7 97 36 0 66 0 6 80 2 0 318 chain 42693 chr11 135006516 + 99102825 99103400 L1PA10 4194 - 44 613 65781 34 3 0 39 1 0 190 1 0 189 9 8 109 chain 166413 chr11 135006516 + 99118209 99120095 L1PA4 6152 - 16 1899 22468 132 2 1 6 0 1 1025 3 1 335 1 0 382 chain 9917 chr11 135006516 + 99163609 99163761 MER57-int 2662 - 1106 1258 160985 103 20 20 29 chain 103698 chr11 135006516 + 99165632 99167373 MER57-int 2662 - 337 1806 35802 237 4 30 139 13 10 288 325 17 4 0 1 195 1 0 25 8 10 169 6 5 4 0 1 81 1 5 20 1 0 95 0 1 4 1 0 106 0 8 14 chain 39711 chr11 135006516 + 99207969 99208459 MER9a1 513 - 0 513 69742 90 0 1 155 1 23 244 chain 15926 chr11 135006516 + 99221709 99221908 L1PA7 6471 + 6268 6469 138590 39 0 2 160 chain 26257 chr11 135006516 + 99226545 99226856 AluYk4 311 - 0 311 98987 311 chain 5112 chr11 135006516 + 99230668 99230785 L1MA3 4352 + 4244 4352 193946 15 2 0 23 8 6 29 1 0 11 0 7 7 11 0 10 chain 3195 chr11 135006516 + 99240056 99240096 MER67D 511 - 471 511 221028 40 chain 43657 chr11 135006516 + 99256929 99257480 MER41A 554 - 0 554 64616 31 0 1 49 20 20 25 0 1 26 0 1 400 chain 30305 chr11 135006516 + 99276338 99276656 AluYb8 318 + 0 318 83895 318 chain 11701 chr11 135006516 + 99287345 99287656 MER83B 357 - 19 357 153468 59 47 57 76 62 57 13 17 41 20 2 0 15 chain 5395 chr11 135006516 + 99293297 99293359 L1PA5 6144 - 6 68 191033 62 chain 19148 chr11 135006516 + 99325013 99325452 THE1D 372 + 11 372 129687 42 67 50 63 6 10 10 13 14 25 1 0 12 75 10 125 chain 26940 chr11 135006516 + 99333889 99334190 AluY 311 + 2 304 96484 130 0 1 171 chain 7175 chr11 135006516 + 99336917 99337088 MSTA 426 - 235 426 176236 39 68 88 64 chain 56015 chr11 135006516 + 99381866 99382480 L1P1 4361 - 1310 1924 55114 614 chain 7232 chr11 135006516 + 99382480 99382557 L1PA3long 6157 + 6075 6152 175880 77 chain 116904 chr11 135006516 + 99401674 99403237 THE1A-int 1579 + 1 1573 32157 296 0 1 126 2 1 15 0 2 165 0 1 22 9 9 203 6 0 79 31 17 318 0 15 107 0 1 85 0 10 99 chain 75631 chr11 135006516 + 99444647 99445644 L1PA7 6471 - 10 999 45697 359 2 0 91 0 4 6 6 2 50 0 1 103 4 3 4 1 0 162 1 0 62 3 0 8 5 4 130 chain 547180 chr11 135006516 + 99448576 99454704 L1PA4 6152 - 16 6152 1809 1124 1 0 222 0 1 850 0 1 767 1 0 954 5 12 872 0 1 88 0 1 667 1 0 576 chain 508376 chr11 135006516 + 99473418 99478844 L1HS 6032 + 603 6032 6291 2538 0 4 2550 1 0 337 chain 28513 chr11 135006516 + 99510594 99510992 THE1A-int 1579 - 1175 1575 91133 130 35 34 124 0 3 109 chain 7831 chr11 135006516 + 99516111 99516200 L1PA7 6471 - 509 598 172122 89 chain 33820 chr11 135006516 + 99516200 99516675 L1PA7 6471 + 5980 6458 77908 121 0 1 188 2 0 5 2 4 13 0 2 79 36 0 10 0 36 19 chain 23904 chr11 135006516 + 99538344 99538667 L1PA8A 6298 + 5998 6290 110892 153 0 1 98 32 0 40 chain 5545 chr11 135006516 + 99547399 99547465 L1PA5 6144 + 6077 6143 189611 66 chain 21025 chr11 135006516 + 99565251 99565522 L1PA7 6471 - 3 267 123834 14 3 0 214 4 0 36 chain 156153 chr11 135006516 + 99582217 99584255 L1PA7 6471 - 4 2028 23840 91 8 0 7 6 14 69 0 1 4 1 0 435 7 8 40 0 2 102 2 1 9 0 1 660 0 1 43 2 0 16 0 1 11 9 4 89 7 6 182 16 5 222 chain 29616 chr11 135006516 + 99597755 99598065 AluYb8 318 + 0 310 86156 310 chain 9322 chr11 135006516 + 99604929 99605082 L1MA3 4352 - 93 245 163940 28 4 0 29 8 14 75 3 0 6 chain 128161 chr11 135006516 + 99632004 99633419 L1PA3long 6157 - 5 1422 28534 137 0 1 244 0 1 1034 chain 205441 chr11 135006516 + 99652465 99654711 L1PA2 6032 + 3774 6029 18828 1257 0 5 146 0 4 843 chain 77000 chr11 135006516 + 99654889 99656239 L1PA8 5853 - 0 1104 44838 93 1 0 7 5 17 48 4 3 6 1 0 71 2 0 9 3 4 33 1 0 35 6 81 306 332 0 130 0 4 257 chain 106315 chr11 135006516 + 99656239 99657596 L1PA8 5853 + 3353 4706 35179 34 0 4 59 1 0 46 6 1 58 15 11 622 2 4 148 1 0 288 1 2 76 chain 14199 chr11 135006516 + 99706651 99706854 MER41A 554 - 24 237 143884 49 7 12 63 5 10 79 chain 65194 chr11 135006516 + 99706877 99707598 L1PA5 6144 - 1 723 50475 159 0 1 562 chain 5846 chr11 135006516 + 99714417 99714486 MER20 218 + 91 160 186720 69 chain 28870 chr11 135006516 + 99716098 99716403 AluYa5 310 - 5 310 89582 305 chain 35483 chr11 135006516 + 99758189 99758744 MLT2A2 560 - 0 560 75581 125 3 6 16 3 14 45 5 0 124 88 84 146 chain 137079 chr11 135006516 + 99762073 99763701 L1PA7 6471 - 10 1641 26626 735 0 5 100 2 0 21 0 1 367 0 1 7 1 0 186 1 0 208 chain 245392 chr11 135006516 + 99774872 99777998 L1PA7 6471 - 10 3146 16492 153 23 11 674 6 5 76 1 4 946 0 5 329 5 0 12 11 10 4 0 1 110 15 10 97 0 1 86 6 7 84 1 0 110 0 21 152 0 4 46 2 1 177 chain 64585 chr11 135006516 + 99779972 99780704 L1PA4 6152 + 5420 6152 50757 272 1 0 127 0 1 332 chain 123357 chr11 135006516 + 99813263 99814877 L1PA8 5853 - 5 1603 29928 51 0 3 28 0 1 5 1 0 19 2 1 39 11 9 13 1 0 71 2 0 43 2 1 68 22 0 137 0 14 339 0 1 671 14 9 75 chain 17608 chr11 135006516 + 99814885 99815080 L1P3 4156 + 3281 3476 133971 195 chain 323194 chr11 135006516 + 99832900 99836554 L1PA4 6152 - 9 3668 12468 139 0 1 1126 0 1 686 2 0 190 1 4 56 1 2 26 1 0 223 1 0 180 1 0 553 0 1 420 1 4 47 chain 22998 chr11 135006516 + 99867820 99868080 L1PA3long 6157 - 2852 3112 115634 260 chain 252805 chr11 135006516 + 99868080 99870899 L1PA3long 6157 + 3337 6157 16092 607 1 2 2211 chain 19145 chr11 135006516 + 99894784 99895130 THE1D 372 + 20 350 129692 34 66 49 63 25 27 31 1 0 126 chain 73305 chr11 135006516 + 99901939 99902795 MER11D 897 + 16 897 46880 486 1 3 88 2 25 279 chain 541819 chr11 135006516 + 99905700 99911855 L1PA4 6152 - 0 6150 2540 6 4 0 203 0 1 34 1 2 94 1 0 504 0 4 1365 0 1 772 0 1 2589 1 0 114 13 7 135 6 5 313 chain 8985 chr11 135006516 + 99916693 99916795 L1PA3long 6157 - 0 104 165689 25 0 2 77 chain 13153 chr11 135006516 + 99916795 99916940 L1PA3long 6157 + 5923 6068 147634 145 chain 95831 chr11 135006516 + 99920312 99921367 L1PA3long 6157 + 5102 6157 37869 1055 chain 16352 chr11 135006516 + 99949603 99949942 THE1C 375 - 23 361 137335 104 24 20 46 7 8 21 0 1 31 66 58 10 0 9 30 chain 40548 chr11 135006516 + 100030674 100031182 L1PA7 6471 - 14 529 68514 18 1 0 70 0 8 29 1 0 188 5 6 196 chain 82663 chr11 135006516 + 100104529 100105538 L1PA7 6471 + 5454 6470 42478 160 0 3 38 0 4 39 0 2 451 0 1 31 0 1 106 1 0 16 10 3 7 3 0 136 0 7 11 chain 10609 chr11 135006516 + 100106048 100106187 LTR22A 463 + 0 142 157783 23 0 1 60 1 2 8 0 1 47 chain 8419 chr11 135006516 + 100107441 100107546 LTR22A 463 - 357 463 168733 11 0 1 94 chain 527134 chr11 135006516 + 100127235 100133678 L1PA7 6471 + 0 6467 4485 404 1 2 132 10 14 9 0 11 73 17 18 361 10 7 64 1 0 5 0 3 393 0 4 646 8 1 479 6 7 362 0 1 486 3 4 1139 1 0 996 0 3 43 2 1 87 1 6 32 0 1 422 0 1 250 chain 549229 chr11 135006516 + 100156478 100162483 L1PA2 6032 + 4 6019 1547 1347 1 0 1218 1 0 147 0 1 1512 0 4 1640 0 7 139 chain 9364 chr11 135006516 + 100176587 100176771 MER30 238 - 10 202 163735 5 0 1 23 3 0 78 4 0 8 42 56 21 chain 21812 chr11 135006516 + 100217543 100217862 THE1B 368 - 40 368 120971 85 35 45 29 1 0 169 chain 15872 chr11 135006516 + 100232630 100232854 L1PA16 3655 - 1706 1934 138735 52 1 0 76 4 10 16 1 0 74 chain 9960 chr11 135006516 + 100238867 100239024 Tigger3a 397 - 109 255 160781 39 23 12 95 chain 12166 chr11 135006516 + 100258211 100258356 L1PA11 4918 + 2015 2163 151550 69 0 3 76 chain 545385 chr11 135006516 + 100279772 100285800 L1PA2 6032 + 0 6027 2025 64 10 0 516 0 4 851 0 2 2841 0 1 976 0 1 665 0 1 105 chain 5021 chr11 135006516 + 100293501 100293645 L1PBa 3878 + 125 242 194916 21 67 17 48 0 23 8 chain 184248 chr11 135006516 + 100295434 100297800 L1PA8 5853 + 3469 5845 20565 1193 1 0 4 0 1 256 5 6 45 0 1 37 0 3 9 0 1 182 21 32 192 2 1 30 4 5 97 1 0 41 5 3 74 9 6 30 0 1 21 2 1 19 1 0 85 chain 74011 chr11 135006516 + 100301009 100301832 L1PA4 6152 - 477 1305 46504 275 1 0 246 0 5 257 0 1 44 chain 41437 chr11 135006516 + 100301832 100302290 L1PA4 6152 + 5685 6143 67365 458 chain 7493 chr11 135006516 + 100305682 100305773 LTR18B 584 + 84 175 174193 91 chain 552357 chr11 135006516 + 100322589 100328610 L1PA2 6032 + 0 6022 1152 1280 0 5 913 1 0 2870 3 0 954 chain 62641 chr11 135006516 + 100335552 100336236 L1PA3long 6157 + 5258 5943 51612 113 0 1 571 chain 554610 chr11 135006516 + 100346451 100352475 L1PA2 6032 - 4 6032 872 7 4 0 47 0 4 2401 0 3 311 0 1 3254 chain 532091 chr11 135006516 + 100359436 100365543 L1PA4 6152 + 1 6143 3952 235 0 5 554 5 6 218 0 1 1743 0 1 413 0 1 225 7 11 523 0 3 92 0 2 351 3 0 715 0 11 209 0 1 674 0 7 36 0 1 104 chain 2980 chr11 135006516 + 100368377 100368415 L1PB3 3668 + 2304 2342 225442 38 chain 11200 chr11 135006516 + 100369143 100369268 L1PA4 6152 + 6014 6139 155422 125 chain 2092 chr11 135006516 + 100378213 100378240 L1PA4 6152 + 5275 5302 237700 27 chain 45913 chr11 135006516 + 100378240 100378741 L1PA4 6152 + 5303 5818 62119 335 0 14 166 chain 19297 chr11 135006516 + 100378741 100378960 L1PA4 6152 + 5819 6038 129250 219 chain 9371 chr11 135006516 + 100378960 100379062 L1PA4 6152 + 6039 6141 163705 102 chain 18478 chr11 135006516 + 100384628 100384912 L1PA8 5853 - 0 278 131565 93 1 0 19 4 3 49 24 22 57 2 0 35 chain 57220 chr11 135006516 + 100397180 100398048 L1PB1 5432 + 4600 5424 54390 16 4 0 4 0 1 362 0 1 119 7 0 11 3 0 19 2 1 13 29 22 51 2 1 16 1 0 44 1 0 15 3 0 15 9 0 16 8 5 14 2 0 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 3412 chr11 135006516 + 100398474 100398514 L1MA9 1812 + 315 355 216897 40 chain 86060 chr11 135006516 + 100401338 100402624 L1PA13 3608 + 2185 3482 41134 39 8 12 68 0 15 160 19 20 485 1 0 5 0 1 15 9 8 64 8 11 31 0 2 11 2 0 27 1 0 25 0 3 41 0 4 41 11 9 14 1 0 40 1 0 21 6 1 32 13 10 36 14 10 22 1 0 14 chain 9404 chr11 135006516 + 100423945 100424141 LTR51 675 + 1 260 163538 59 56 60 33 2 61 46 chain 32759 chr11 135006516 + 100460322 100460717 L1P1 4361 - 33 427 79599 23 1 0 146 0 1 10 8 7 207 chain 225660 chr11 135006516 + 100476816 100480238 L1PA11 4918 + 1042 4517 17547 86 19 0 80 1 0 91 0 2 81 4 0 393 0 1 36 1 2 125 336 391 195 0 4 105 2 0 9 0 1 48 1 0 4 0 1 949 7 6 142 5 6 122 3 4 74 31 32 205 1 10 10 2 3 68 6 0 38 10 28 13 2 0 65 2 0 16 1 0 20 4 0 9 chain 37210 chr11 135006516 + 100494207 100494697 MER9a1 513 + 0 513 73228 78 24 25 141 2 24 245 chain 495952 chr11 135006516 + 100523759 100529252 L1PA3long 6157 + 8 6153 7072 86 0 526 161 0 128 1650 0 1 656 0 1 471 0 1 1413 6 1 1050 chain 101614 chr11 135006516 + 100529296 100530879 L1PB1 5432 + 3838 5393 36367 154 13 24 54 6 0 46 0 4 215 0 1 197 0 1 94 3 0 133 14 11 17 26 26 171 0 3 5 14 11 98 3 0 10 6 5 20 1 0 4 3 2 14 5 1 9 3 1 51 2 1 16 1 0 44 1 0 15 3 0 8 16 7 15 3 1 5 1 0 14 2 0 24 1 0 4 2 0 5 0 2 12 chain 13093 chr11 135006516 + 100533252 100533503 MER44A 345 - 2 255 147873 67 27 41 7 10 0 90 6 8 18 6 0 9 0 2 11 chain 12644 chr11 135006516 + 100569217 100569380 AluSp 311 + 93 250 149660 85 6 0 72 chain 37757 chr11 135006516 + 100615509 100615992 LTR10F 562 - 0 562 72480 86 4 11 48 2 0 5 0 4 126 1 2 4 1 0 45 0 70 161 chain 149231 chr11 135006516 + 100616292 100618629 HERVIP10FH-int 2884 - 60 2735 24724 35 12 4 13 1 0 17 1 0 50 2 1 49 1 0 16 1 0 96 0 1 268 1 0 24 2 1 200 1 0 170 376 721 16 0 1 4 7 6 33 0 1 421 0 15 34 1 0 193 6 7 28 4 0 55 2 1 135 3 0 59 chain 38588 chr11 135006516 + 100620862 100621599 LTR10F 562 - 0 562 71307 325 0 1 4 0 14 48 259 69 101 chain 20916 chr11 135006516 + 100621239 100621493 LTR10F 562 - 132 372 123619 198 14 0 42 chain 9762 chr11 135006516 + 100658094 100658217 THE1D 372 + 245 368 161787 123 chain 29739 chr11 135006516 + 100679126 100679435 AluYb8 318 - 9 318 85697 309 chain 18310 chr11 135006516 + 100710361 100710586 7SK 245 + 1 227 132047 177 0 1 48 chain 199641 chr11 135006516 + 100713397 100716213 L1PB1 5432 + 2162 5414 19236 259 2 1 26 0 4 45 1 0 159 1 0 53 0 1 132 2 0 19 8 9 15 3 517 316 3 9 67 0 1 167 0 1 29 2 1 361 3 0 15 12 17 159 1 0 84 0 1 43 0 1 41 0 1 58 0 4 149 0 1 175 1 2 10 68 0 23 25 23 6 2 0 53 7 6 11 2 1 42 1 0 16 14 1 30 8 5 14 2 0 24 4 3 18 1 0 13 2 1 9 chain 22056 chr11 135006516 + 100733489 100733784 AluSp 311 + 10 298 119992 81 3 0 18 5 4 7 3 0 178 chain 3513 chr11 135006516 + 100734673 100734713 MADE1 96 - 53 93 215166 40 chain 3599 chr11 135006516 + 100746587 100746627 MER58B 340 + 151 191 213666 40 chain 208809 chr11 135006516 + 100750862 100753822 L1PB1 5432 - 17 2952 18579 11 1 0 13 1 0 20 2 1 24 2 0 14 8 5 19 16 6 6 3 0 15 1 0 43 2 1 12 7 6 49 19 13 6 0 3 10 1 0 24 3 0 9 1 2 65 0 1 4 1 0 5 12 14 144 0 1 239 0 1 55 0 7 119 6 7 147 0 8 239 0 1 254 0 2 53 51 17 93 0 16 43 0 4 196 5 4 299 33 26 89 0 3 105 1 0 16 0 5 29 15 4 204 0 9 77 1 0 18 chain 512595 chr11 135006516 + 100766578 100772772 L1PA6 6164 - 4 6164 5913 135 6 24 8 20 0 428 3 6 69 1 2 679 2 0 6 4 6 1665 1 2 748 0 1 57 71 6 131 0 1 599 1 0 331 2 1 6 0 1 5 0 21 655 1 0 483 0 7 77 chain 30367 chr11 135006516 + 100774499 100774876 MLT2A1 477 - 95 477 83746 209 1 5 25 0 1 142 chain 15706 chr11 135006516 + 100780365 100780570 L1PB4 2604 - 966 1167 139246 81 5 0 43 0 1 76 chain 21252 chr11 135006516 + 100804525 100804807 AluSp 311 - 18 302 123012 11 6 5 12 4 6 219 0 1 30 chain 19935 chr11 135006516 + 100835685 100836002 THE1C 375 - 47 375 127346 79 14 27 27 8 9 67 1 2 12 1 2 13 5 0 90 chain 3153 chr11 135006516 + 100860190 100860231 MER58D 378 - 5 47 221887 23 0 1 18 chain 4579 chr11 135006516 + 100871830 100871885 MIR 256 + 57 114 199882 49 0 2 6 chain 67710 chr11 135006516 + 100884300 100885178 L1PA8 5853 - 0 870 49363 92 2 1 19 3 2 40 11 12 8 1 0 71 2 0 44 1 0 477 2 0 64 1 0 11 1 3 21 2 0 5 chain 12990 chr11 135006516 + 100895492 100895643 L1PA7 6471 + 6318 6467 148282 141 2 0 8 chain 9260 chr11 135006516 + 100916238 100916395 L1PB4 2604 - 62 219 164260 6 2 0 40 20 22 89 chain 147357 chr11 135006516 + 100938903 100940740 L1PA7 6471 + 4610 6470 24988 193 5 9 143 2 1 49 0 1 620 0 6 68 0 2 285 7 8 190 11 14 36 0 2 215 1 6 12 chain 533702 chr11 135006516 + 100940757 100947202 L1PA7 6471 + 0 6465 3740 411 0 1 338 0 3 309 1 0 997 0 1 520 0 1 58 1 2 58 0 2 65 10 12 75 0 1 9 1 0 76 1 0 370 4 0 187 6 1 80 1 4 377 5 9 35 0 1 810 0 4 345 0 3 31 0 1 421 5 0 82 2 3 24 0 6 502 0 2 228 chain 22077 chr11 135006516 + 100970802 100971199 THE1C 375 + 0 374 119898 15 2 0 32 1 2 64 2 1 21 10 0 4 9 0 34 50 48 153 chain 75571 chr11 135006516 + 100976260 100977175 L1PA7 6471 + 4761 5687 45733 365 0 1 472 0 4 11 1 4 11 8 11 47 chain 63773 chr11 135006516 + 100977186 100977950 L1PA7 6471 + 5700 6466 51113 488 0 3 267 1 0 8 chain 4413 chr11 135006516 + 101004412 101004490 L1MC3 1789 - 583 652 201759 11 14 5 53 chain 126821 chr11 135006516 + 101011496 101013271 MER41-int 2638 - 5 1815 28856 113 7 6 17 1 28 16 0 1 357 2 3 71 9 7 28 5 6 17 0 8 40 0 1 61 2 0 183 1 0 126 0 2 219 31 30 58 5 7 15 2 1 18 3 1 221 0 2 147 chain 167432 chr11 135006516 + 101019775 101021668 L1PA4 6152 - 0 1904 22346 6 0 5 44 0 4 80 0 7 413 0 1 495 6 1 461 1 0 387 chain 5108 chr11 135006516 + 101021668 101021722 L1PA4 6152 + 4187 4241 192991 54 chain 111929 chr11 135006516 + 101028021 101029697 THE1C-int 1605 + 0 1605 33685 16 1 2 164 1 2 145 21 28 83 90 16 285 16 10 15 0 1 4 1 0 217 48 25 88 5 14 37 1 2 57 5 6 170 8 14 66 0 5 63 0 1 69 chain 28551 chr11 135006516 + 101034321 101034628 AluYk11 308 - 1 308 90957 307 chain 16231 chr11 135006516 + 101061643 101061826 L1PA3long 6157 - 0 185 137670 156 0 2 27 chain 5651 chr11 135006516 + 101076443 101076514 L1MA5A 2387 - 81 151 188559 11 1 0 59 chain 68602 chr11 135006516 + 101081935 101083067 MER11A 1151 - 0 1145 48985 163 6 7 60 0 1 37 18 0 21 43 0 26 50 26 67 8 8 30 12 17 5 3 0 4 0 1 4 1 0 118 2 1 5 0 1 11 6 7 90 0 1 146 4 0 62 1 6 48 8 0 24 0 99 49 chain 90191 chr11 135006516 + 101084154 101085578 HERVK11-int 2540 - 237 1555 39578 30 80 35 129 0 5 4 1 0 76 1 0 189 1 0 104 17 12 114 6 9 306 17 1 35 12 1 27 22 11 29 3 0 7 3 2 48 1 0 64 2 0 21 59 43 16 chain 68865 chr11 135006516 + 101091051 101092107 MER11A 1151 - 17 1145 48868 59 5 9 31 7 6 41 6 7 60 0 1 37 18 0 21 6 13 13 25 1 10 0 7 9 8 1 119 12 14 38 0 12 80 0 7 11 7 1 85 0 1 146 4 0 66 1 0 52 0 91 79 chain 28163 chr11 135006516 + 101101396 101101739 LTR12C 1709 - 713 1055 92420 159 1 0 183 chain 15076 chr11 135006516 + 101101739 101101977 LTR12C 1709 - 777 936 102680 70 78 0 25 1 0 64 chain 4123 chr11 135006516 + 101101809 101101858 LTR12C 1709 - 1006 1055 140204 49 chain 473975 chr11 135006516 + 101105159 101110837 HERV9-int 5642 - 0 5642 7917 17 2 0 3 4 0 19 28 5 13 1 0 60 1 0 27 3 1 33 9 7 225 2 1 162 0 2 513 2 0 1920 0 3 739 0 1 304 5 0 245 0 1 231 1 0 4 4 1 314 1 0 673 19 24 94 chain 5588 chr11 135006516 + 101111504 101111568 LTR12C 1709 - 991 1055 189204 64 chain 4121 chr11 135006516 + 101111605 101111783 LTR12C 1709 - 973 1032 205644 33 41 0 16 78 0 10 chain 36193 chr11 135006516 + 101115040 101115502 LTR2 463 + 0 463 74636 360 14 15 88 chain 45602 chr11 135006516 + 101117583 101118165 HERVIP10FH-int 2884 + 208 783 62401 192 8 0 65 0 2 129 0 1 26 1 0 156 1 0 4 chain 354545 chr11 135006516 + 101118239 101122568 Harlequin-int 5206 + 864 5190 11485 37 1 0 106 1 0 172 1 2 524 1 6 514 0 1 1250 10 4 5 0 2 142 3 2 651 1 0 552 39 46 64 0 1 65 0 1 80 7 1 87 6 1 10 chain 34717 chr11 135006516 + 101122576 101123038 LTR2 463 + 0 463 76599 210 23 23 129 12 13 88 chain 5208 chr11 135006516 + 101123853 101123911 L1PA2 6032 - 2 60 192933 58 chain 49456 chr11 135006516 + 101139564 101140236 L1PA8 5853 - 4 727 59421 78 12 11 81 1 0 21 0 8 40 2 0 46 1 0 168 0 2 108 7 53 107 chain 34568 chr11 135006516 + 101151215 101151605 L1PA2 6032 - 0 390 76795 390 chain 46372 chr11 135006516 + 101151605 101152202 L1P1 4361 - 3759 4360 61706 28 1 0 338 0 4 70 30 31 130 chain 400925 chr11 135006516 + 101162521 101167977 L1PB1 5432 - 5 5420 10056 4 1 0 5 1 0 27 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 16 3 14 1 0 44 2 1 14 2 1 53 2 0 8 86 56 32 14 0 450 3 0 23 22 23 95 0 1 136 0 5 489 4 0 32 0 3 93 1 0 427 9 6 88 1 0 9 0 2 209 1 0 160 2 0 29 3 0 195 1 0 45 1 0 4 5 4 48 5 0 64 0 6 177 2 1 144 0 3 84 0 1 255 1 0 4 0 1 141 3 2 130 0 6 56 15 25 246 0 2 602 2 1 56 7 15 36 0 12 406 1 0 7 chain 26161 chr11 135006516 + 101172755 101173114 THE1A 353 + 0 353 99361 4 1 0 43 7 8 37 1 0 133 4 0 52 2 1 75 chain 66627 chr11 135006516 + 101179935 101180664 L1PA3long 6157 - 0 729 49818 729 chain 15027 chr11 135006516 + 101181716 101181992 L1PB1 5432 - 10 270 141246 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 18 18 15 12 1 0 45 2 1 14 2 1 52 2 0 6 chain 25675 chr11 135006516 + 101182008 101182343 L1PB1 5432 - 1151 1488 101387 82 0 1 231 1 4 7 2 0 12 chain 39119 chr11 135006516 + 101182345 101182830 L1PB1 5432 - 1488 1973 70577 178 3 4 35 1 0 268 chain 46319 chr11 135006516 + 101182836 101183421 L1PB1 5432 - 2011 2590 61755 202 9 8 165 5 0 204 chain 14374 chr11 135006516 + 101183427 101183621 L1PB1 5432 - 2594 2788 143286 194 chain 5925 chr11 135006516 + 101183634 101183706 L1PB1 5432 - 2801 2873 185941 72 chain 21153 chr11 135006516 + 101183710 101183986 L1PB1 5432 - 2881 3161 123361 32 0 1 24 0 2 203 0 1 17 chain 18866 chr11 135006516 + 101183986 101184244 L1PB1 5432 - 3164 3422 130472 258 chain 123199 chr11 135006516 + 101187556 101189119 THE1B-int 1605 - 8 1604 29979 221 0 1 287 1 0 4 0 1 116 6 7 4 1 0 365 3 7 127 0 25 61 0 1 69 0 1 161 0 1 137 chain 23814 chr11 135006516 + 101189119 101189485 THE1B 368 - 0 368 111399 56 7 6 53 28 40 14 8 0 30 1 0 169 chain 445341 chr11 135006516 + 101235216 101240962 L1PA7 6471 - 6 6471 8893 147 1 0 165 1 0 20 0 2 288 1 2 141 0 2 58 1 2 22 8 14 175 1 0 479 1 0 228 151 816 325 0 5 26 0 4 144 0 1 202 0 1 211 4 5 341 1 2 293 0 1 56 1 0 38 0 1 48 0 4 396 9 0 46 0 1 213 30 26 124 0 3 357 10 11 607 0 4 98 0 1 94 3 4 16 0 30 165 chain 10644 chr11 135006516 + 101236961 101237084 L1P3 4156 + 3162 3285 157625 123 chain 282048 chr11 135006516 + 101245188 101248432 L1PA5 6144 - 4 3639 14532 652 0 9 184 0 4 89 0 335 527 1 2 251 0 56 742 18 0 125 0 2 173 0 1 141 0 1 341 chain 83760 chr11 135006516 + 101248439 101249418 L1PA5 6144 + 1450 2504 42004 116 0 63 152 1 2 325 0 1 84 0 2 179 0 8 122 chain 250439 chr11 135006516 + 101264844 101268293 L1PA7 6471 - 1 3074 16217 4 1 0 156 10 12 597 1 0 289 6 14 107 258 0 559 0 1 204 0 4 26 1 2 219 0 2 48 1 0 10 136 4 32 2 0 183 3 0 239 0 1 23 0 1 230 2 0 26 0 4 76 chain 11101 chr11 135006516 + 101267341 101267477 L1PA7 6471 - 620 755 154570 87 1 0 48 chain 29699 chr11 135006516 + 101290009 101290319 AluYb8 318 + 1 311 85834 310 chain 313856 chr11 135006516 + 101333865 101337896 L1P3 4156 - 17 4156 12864 24 3 2 6 2 0 296 0 1 260 0 4 46 1 0 349 8 21 216 1 4 164 0 1 51 0 2 61 3 0 437 1 5 155 1 2 689 20 5 48 0 1 8 7 6 7 0 19 9 0 6 38 7 17 113 14 80 242 0 5 155 12 9 166 18 0 89 1 0 68 2 1 7 0 1 36 3 4 14 0 16 173 chain 24002 chr11 135006516 + 101361906 101362177 AluYc 301 + 11 284 110321 109 0 2 162 chain 14247 chr11 135006516 + 101363885 101364116 MER30 238 - 0 238 143734 99 1 0 7 11 29 72 23 13 18 chain 7870 chr11 135006516 + 101366653 101366791 MSTA 426 - 28 187 171866 30 0 2 21 19 44 8 6 0 54 chain 12497 chr11 135006516 + 101368435 101368625 L1PA8 5853 - 0 190 150254 85 9 8 19 2 1 7 0 4 41 1 0 9 1 0 16 chain 8030 chr11 135006516 + 101388944 101389055 L1MA1 4479 + 4031 4139 170866 47 1 0 26 3 1 34 chain 125997 chr11 135006516 + 101414086 101415618 L1PA7 6471 + 4943 6468 29101 148 11 0 45 9 6 7 0 2 336 0 1 126 0 3 690 1 2 159 chain 30077 chr11 135006516 + 101416783 101417102 AluYb8 318 - 0 318 84570 192 1 0 126 chain 28545 chr11 135006516 + 101430375 101430686 L1PA4 6152 - 9 320 90986 311 chain 507605 chr11 135006516 + 101437321 101443749 L1PA7 6471 + 5 6470 6357 82 0 1 152 0 10 117 6 7 4 1 0 32 1 2 68 30 34 68 4 5 167 1 0 27 7 5 18 7 12 9 0 1 321 1 0 209 0 1 312 13 11 16 8 14 11 1 4 333 6 5 100 5 6 221 0 3 189 2 0 50 4 0 472 1 0 240 0 2 5 9 7 67 1 0 78 2 0 499 0 1 278 0 3 518 0 1 818 1 0 89 3 15 177 0 1 567 chain 23284 chr11 135006516 + 101467139 101467626 L1MA3 4352 + 3903 4352 114286 31 2 6 122 14 15 16 29 13 7 3 0 63 11 0 59 4 0 14 11 9 21 39 36 13 6 2 22 chain 510953 chr11 135006516 + 101509697 101515774 L1PA6 6164 + 6 6160 6075 253 1 2 5 1 0 49 20 88 97 9 5 5 0 3 740 4 9 211 0 1 856 3 4 348 1 2 506 3 1 338 0 1 771 0 2 1115 0 2 582 3 4 148 2 0 6 chain 117822 chr11 135006516 + 101515792 101517483 L1PA10 4194 + 2438 4150 31857 40 19 26 9 0 1 32 0 1 6 7 6 17 39 36 18 1 0 85 0 1 11 1 3 98 9 3 393 14 15 200 2 1 17 5 25 556 7 8 42 29 28 34 chain 553176 chr11 135006516 + 101549148 101555279 L1PA3long 6157 - 0 6151 1048 310 0 1 538 0 2 1361 0 1 1360 0 15 1865 0 1 697 chain 76235 chr11 135006516 + 101565793 101566761 LTR5_Hs 974 + 0 974 45345 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 560165 chr11 135006516 + 101566761 101573490 HERVK-int 6823 + 0 6567 345 5 1 0 11 1 0 3 1 0 23 1 0 20 1 0 38 1 0 21 15 12 17 12 0 306 1 0 204 2 0 28 1 0 19 1 0 312 1 0 440 1 0 369 2 0 7 1 0 2571 0 6 1103 4 3 10 1 0 198 1 0 21 1 0 101 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 11 1 0 20 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 12 35 26 17 1 0 4 chain 76366 chr11 135006516 + 101574291 101575259 LTR5_Hs 974 + 0 974 45281 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 22831 chr11 135006516 + 101579343 101579686 THE1B 368 + 0 368 116439 45 0 15 81 0 4 27 3 2 27 35 42 125 chain 28365 chr11 135006516 + 101590538 101590852 AluYa5 310 + 0 307 91713 97 2 0 29 5 0 181 chain 7015 chr11 135006516 + 101617700 101617777 L1PA5 6144 + 6055 6132 177360 77 chain 26604 chr11 135006516 + 101649075 101649445 THE1B 368 + 0 368 97639 18 0 1 60 2 3 87 1 0 29 13 11 21 1 0 138 chain 6865 chr11 135006516 + 101651065 101651145 THE1B 368 + 59 139 178460 80 chain 45813 chr11 135006516 + 101659689 101660240 MLT2A2 560 - 0 559 62215 178 0 1 106 0 7 267 chain 21318 chr11 135006516 + 101667528 101667884 MSTB 430 + 2 402 122808 53 5 4 58 8 7 32 2 0 9 6 50 32 14 15 31 1 0 11 0 5 48 1 0 45 chain 4465 chr11 135006516 + 101669423 101669494 LTR60 593 + 8 78 201168 39 11 10 21 chain 55043 chr11 135006516 + 101670604 101671214 L1PA3long 6157 + 5544 6157 55682 598 0 3 12 chain 25630 chr11 135006516 + 101672422 101672830 L1PA7 6471 + 5298 5621 101582 11 0 3 34 16 0 182 72 0 93 chain 6244 chr11 135006516 + 101672830 101672901 L1PA7 6471 + 5627 5698 183217 71 chain 64520 chr11 135006516 + 101672901 101673666 L1PA7 6471 + 5700 6469 50789 139 0 1 51 6 7 377 0 2 192 chain 24796 chr11 135006516 + 101682092 101682466 THE1C 375 + 0 375 105911 109 5 6 5 1 0 18 1 5 36 22 19 177 chain 17850 chr11 135006516 + 101685857 101686054 L1PA4 6152 + 5946 6143 133240 197 chain 15113 chr11 135006516 + 101700275 101700625 L1PB1 5432 + 5107 5422 141002 7 7 0 24 1 0 8 1 0 12 18 12 50 18 16 43 11 5 12 2 0 6 1 0 9 8 0 15 9 6 14 0 5 19 1 0 21 1 0 9 0 1 5 2 0 16 chain 75024 chr11 135006516 + 101707056 101707889 L1PA3long 6157 - 1964 2796 45829 306 1 0 526 chain 172075 chr11 135006516 + 101707889 101709867 L1PA3long 6157 + 4202 6157 21805 152 0 4 538 31 0 408 0 4 516 1 0 189 1 2 142 chain 135183 chr11 135006516 + 101712652 101714185 L1PA5 6144 + 4605 6137 26977 53 1 0 1479 chain 552185 chr11 135006516 + 101723220 101729355 L1PA3long 6157 + 5 6157 1172 548 1 0 187 1 2 2449 1 0 737 0 1 2117 0 17 94 chain 25027 chr11 135006516 + 101744849 101745134 AluSp 311 - 16 301 104651 285 chain 148862 chr11 135006516 + 101746729 101748611 L1PA10 4194 - 44 1938 24777 34 3 0 34 1 0 63 0 4 385 0 4 45 0 1 406 5 4 32 8 7 179 4 5 188 0 1 77 0 4 21 0 2 23 0 1 374 chain 17532 chr11 135006516 + 101750831 101751132 LTR64 526 - 236 526 134177 37 25 0 20 15 17 5 2 0 62 6 21 4 1 0 124 chain 216899 chr11 135006516 + 101767096 101769999 L1PA7 6471 - 6 2624 18059 13 0 1 130 0 1 183 0 1 440 1 2 73 1 0 424 0 1 304 300 0 117 0 3 101 0 8 416 0 1 321 7 6 72 chain 4367 chr11 135006516 + 101801376 101801440 LTR12_ 688 - 508 573 202370 33 4 5 27 chain 28982 chr11 135006516 + 101808602 101808907 AluYb8 318 + 0 305 89085 305 chain 37166 chr11 135006516 + 101864081 101864682 L1PA15 4387 - 21 603 73285 11 1 0 26 5 0 14 3 1 44 6 3 29 0 6 14 3 1 10 8 6 16 1 0 14 2 1 40 1 0 25 6 5 163 5 4 40 4 2 78 3 0 29 chain 21071 chr11 135006516 + 101865606 101865850 L1PA7 6471 - 1 245 123655 12 1 0 144 0 1 87 chain 21376 chr11 135006516 + 101874136 101874397 AluSp 311 + 10 269 122598 122 2 0 137 chain 394114 chr11 135006516 + 101902155 101906701 L1PA6 6164 - 3 4576 10312 853 1 0 1324 0 4 449 1 0 340 9 10 853 7 0 567 8 39 134 chain 28467 chr11 135006516 + 101908689 101908997 AluYa5 310 + 0 310 91314 24 0 2 284 chain 50582 chr11 135006516 + 101957287 101957842 L1PA3long 6157 + 5601 6156 58597 555 chain 3768 chr11 135006516 + 101991811 101991881 Tigger7 736 + 28 98 210851 24 7 8 19 1 0 19 chain 124566 chr11 135006516 + 101997391 101998931 THE1A-int 1579 + 0 1570 29518 37 0 1 41 0 4 113 0 5 150 0 1 302 0 3 226 0 3 315 16 29 268 0 1 14 1 0 57 chain 28440 chr11 135006516 + 102054525 102054830 AluYa5 310 + 0 304 91420 132 1 0 172 chain 21271 chr11 135006516 + 102095944 102096242 AluSp 311 + 12 301 122953 41 23 21 220 7 0 7 chain 28940 chr11 135006516 + 102118324 102118632 AluYa5 310 - 2 310 89274 308 chain 20139 chr11 135006516 + 102164583 102164848 L1PA8 5853 - 0 267 126714 85 1 8 19 2 1 50 1 0 11 1 0 71 2 0 22 chain 404483 chr11 135006516 + 102167433 102172204 L1PA6 6164 - 60 6141 9964 480 0 1 69 0 3 354 0 3 484 1 2 342 0 4 456 0 2 373 0 1 104 0 13 552 5 4 65 3 6 45 15 16 192 1 0 206 0 2 37 0 1272 328 0 7 112 1 0 359 1 0 5 0 1 181 chain 6335 chr11 135006516 + 102197315 102197393 MER75A 77 + 0 77 182507 51 1 0 26 chain 33986 chr11 135006516 + 102200262 102200668 L1PA5 6144 + 5727 6134 77635 83 0 1 160 1 2 58 1 0 103 chain 554921 chr11 135006516 + 102239897 102245923 L1PA2 6032 - 3 6031 834 2980 1 0 338 1 3 2219 0 1 487 chain 42188 chr11 135006516 + 102255693 102256184 LTR15 485 - 0 485 66410 402 6 0 83 chain 22553 chr11 135006516 + 102277335 102277617 AluY 311 + 11 300 117793 69 3 7 38 1 2 151 0 2 20 chain 3599 chr11 135006516 + 102297029 102297097 MIR 256 - 20 92 213649 7 0 3 20 14 15 27 chain 108146 chr11 135006516 + 102302827 102304387 THE1D-int 1627 + 14 1619 34674 103 54 0 111 2 0 97 1 2 68 0 81 52 0 1 73 7 5 113 3 0 7 0 3 411 1 3 7 0 33 7 36 0 71 33 35 209 0 6 60 12 25 22 chain 498933 chr11 135006516 + 102309353 102315421 L1PA6 6164 + 0 6156 6901 63 6 5 126 1 2 313 2 1 34 4 0 41 7 6 123 0 49 176 0 25 235 1 0 130 49 53 448 1 0 193 0 1 111 0 1 53 0 2 73 0 2 33 0 1 25 0 1 399 1 2 442 1 3 13 2 0 5 7 1 508 0 5 247 1 2 846 0 1 442 2 1 72 1 0 55 0 3 113 1 0 305 0 2 112 2 4 95 5 0 10 1 10 132 chain 39675 chr11 135006516 + 102315434 102315907 L1PA5 6144 + 5668 6139 69792 11 2 0 5 0 2 310 1 0 25 1 0 118 chain 28974 chr11 135006516 + 102339136 102339509 MER41A 554 - 107 477 89119 17 1 2 255 4 0 96 chain 23873 chr11 135006516 + 102339604 102339922 MER57A1 433 - 114 433 111070 34 6 8 154 6 5 118 chain 15080 chr11 135006516 + 102343142 102343326 MER50 708 - 22 206 141086 184 chain 8795 chr11 135006516 + 102343326 102343436 LTR8 732 - 0 110 166668 110 chain 289214 chr11 135006516 + 102372636 102376504 L1PA8 5853 - 246 3805 14069 41 7 6 24 0 1 159 312 0 146 0 1 128 8 7 85 0 2 90 0 1 95 4 0 200 6 7 215 0 1 64 1 0 243 0 1 32 0 1 186 0 1 242 2 3 11 1 0 743 3 1 331 0 2 489 chain 3639 chr11 135006516 + 102377388 102377430 L1P3 4156 + 1366 1408 212974 42 chain 3839 chr11 135006516 + 102388914 102388962 L1MB2 1706 + 1641 1692 209796 43 0 3 5 chain 179425 chr11 135006516 + 102410057 102412544 L1PBa 3878 + 49 2484 21040 11 3 0 3 1 0 12 24 17 8 1 0 46 67 19 47 1 0 20 9 6 17 0 2 267 1 0 269 12 16 28 0 3 143 7 4 161 0 1 289 0 4 172 4 0 11 10 5 100 2 10 33 0 1 463 0 2 217 1 2 6 1 0 20 chain 11174 chr11 135006516 + 102416832 102416970 MER34A1 583 + 8 146 155546 138 chain 110138 chr11 135006516 + 102438905 102440384 THE1D-int 1627 - 5 1614 34172 26 0 1 169 16 27 273 0 3 331 8 15 9 6 0 45 4 0 162 7 22 83 12 114 22 0 1 306 chain 29581 chr11 135006516 + 102471853 102472162 AluYa5 310 - 1 310 86268 309 chain 24642 chr11 135006516 + 102515247 102515548 AluYk4 311 + 12 309 106769 111 3 0 80 0 1 92 2 0 13 chain 140190 chr11 135006516 + 102519772 102522682 L1PA4 6152 - 1 1649 26117 258 0 1 40 0 4 723 0 15 476 1279 0 21 8 5 105 chain 3094 chr11 135006516 + 102526770 102526815 MADE1 96 - 1 46 223031 36 1 0 4 0 1 4 chain 3240 chr11 135006516 + 102542786 102542823 L1PA15 4387 - 3147 3184 220225 37 chain 3807 chr11 135006516 + 102549528 102549569 MER5A1 166 + 46 87 210281 41 chain 18788 chr11 135006516 + 102555113 102555480 THE1D 372 - 0 370 130715 32 1 0 23 5 6 4 1 0 61 64 78 58 1 2 4 1 0 52 12 0 37 0 2 11 chain 4456 chr11 135006516 + 102566632 102566743 MER63A 208 - 17 130 201285 20 45 47 46 chain 20975 chr11 135006516 + 102567759 102568619 Tigger3b 1229 - 31 604 124015 19 20 36 133 31 18 12 10 0 97 491 211 47 chain 542547 chr11 135006516 + 102612171 102618193 L1PA3long 6157 - 0 6157 2415 5 0 2 966 0 1 4113 0 1 163 1 129 521 0 1 102 0 1 81 0 1 70 chain 5114 chr11 135006516 + 102652697 102652761 Tigger3b 1229 + 14 81 193932 6 0 3 58 chain 12551 chr11 135006516 + 102655108 102655272 L1PB4 2604 - 273 436 150039 136 4 3 24 chain 48287 chr11 135006516 + 102675374 102675988 L1PB1 5432 + 4493 5103 60255 121 10 7 365 4 3 114 chain 515640 chr11 135006516 + 102684623 102691104 L1PA7 6471 - 12 6468 5604 430 0 1 399 0 5 18 0 4 253 1 0 61 0 1 51 1 13 230 0 10 34 1 0 144 0 2 245 0 1 33 0 2 67 35 15 35 1 0 482 0 4 168 0 1 122 5 6 40 0 2 94 3 2 67 0 1 56 9 9 86 2 1 374 0 4 245 32 0 623 1 2 163 0 1 212 0 5 6 15 10 804 1 0 85 36 42 187 1 2 85 16 2 95 0 1 33 0 1 39 15 0 240 chain 3474 chr11 135006516 + 102692919 102692955 L1P3 4156 - 3092 3128 215745 36 chain 18004 chr11 135006516 + 102697804 102698107 THE1B-int 1605 - 1351 1605 132847 47 6 5 4 0 1 63 0 1 21 51 0 29 1 2 81 chain 2415 chr11 135006516 + 102762581 102762616 MER5A 189 + 6 42 234075 18 1 2 16 chain 4163 chr11 135006516 + 102768282 102768337 L1PB1 5432 + 5369 5422 205055 24 1 0 11 1 0 18 chain 16469 chr11 135006516 + 102768393 102768681 THE1B 368 + 7 306 137012 104 0 3 6 2 0 11 7 11 34 0 2 6 34 30 13 8 16 63 chain 21238 chr11 135006516 + 102774737 102775051 LTR7 482 - 8 482 123059 41 12 14 70 5 125 109 9 47 68 chain 316927 chr11 135006516 + 102776298 102780228 HERVH-int 3825 - 0 3825 12728 383 33 34 125 0 4 588 4 13 83 7 0 239 3 7 907 0 1 287 0 2 218 32 32 107 13 16 80 44 1 26 42 0 16 1 0 4 25 4 9 21 0 8 3 0 13 1 14 24 1 0 10 1 0 38 2 0 532 chain 28205 chr11 135006516 + 102780242 102780638 LTR7 482 - 12 482 92287 37 12 14 110 0 2 30 0 31 20 0 1 110 8 46 69 chain 50829 chr11 135006516 + 102781003 102781577 L1PA5 6144 + 5567 6142 58414 243 0 1 331 chain 44201 chr11 135006516 + 102810288 102810825 MER41A 554 - 0 541 63944 145 9 13 383 chain 138810 chr11 135006516 + 102838810 102840417 L1PA4 6152 - 8 1619 26349 105 0 1 29 0 1 6 7 0 7 0 7 647 0 2 650 0 1 126 1 0 29 chain 59509 chr11 135006516 + 102840417 102841076 L1PA4 6152 + 3849 4503 53101 613 5 0 41 chain 19188 chr11 135006516 + 102846917 102847120 L1HS 6032 + 5829 6032 129562 203 chain 99204 chr11 135006516 + 102848760 102849984 L1PA7 6471 - 1730 2961 36971 254 5 6 178 0 7 40 27 18 127 0 4 500 0 1 30 1 4 62 chain 142727 chr11 135006516 + 102849985 102851710 L1PA7 6471 + 4742 6469 25696 26 0 3 552 13 0 8 0 13 277 1 0 122 2 1 215 0 1 509 chain 3395 chr11 135006516 + 102855766 102855830 MADE2 80 - 15 80 217173 30 10 11 24 chain 73871 chr11 135006516 + 102889121 102889940 L1PA5 6144 - 1 821 46578 330 0 1 489 chain 32133 chr11 135006516 + 102899538 102899895 L1PA3long 6157 + 5800 6157 80638 357 chain 14508 chr11 135006516 + 102910292 102910459 L1P1 4361 - 33 199 142865 23 1 0 143 chain 10790 chr11 135006516 + 102910459 102910576 L1PA2 6032 + 5913 6030 157033 117 chain 25707 chr11 135006516 + 102920521 102920817 AluSp 311 - 5 300 101259 280 1 0 15 chain 19773 chr11 135006516 + 102925676 102926005 Tigger4b 360 - 0 331 127898 43 0 16 10 14 0 114 39 46 91 7 0 11 chain 55521 chr11 135006516 + 102942962 102943647 L1PA5 6144 + 5492 6144 55403 98 36 0 289 0 1 175 0 2 87 chain 8001 chr11 135006516 + 102988016 102988103 L1PA5 6144 - 7 94 171051 87 chain 547065 chr11 135006516 + 103006960 103013082 L1PA3long 6157 - 0 6151 1822 55 0 4 2110 9 24 1069 1 0 629 0 1 90 14 17 311 0 1 118 0 6 282 1 0 400 1 0 5 0 4 318 7 0 98 1 5 39 0 1 564 chain 13829 chr11 135006516 + 103087940 103088085 AluYb8 318 - 13 158 145144 145 chain 283092 chr11 135006516 + 103095004 103098937 L1PB1 5432 - 10 3981 14461 18 1 0 13 6 5 16 2 1 23 2 0 6 18 14 14 19 10 21 5 4 37 4 5 14 2 1 52 2 0 7 9 5 12 8 6 22 7 0 9 8 11 28 0 1 433 9 6 481 3 1 5 0 2 112 0 1 211 15 53 38 1 4 313 2 0 243 2 1 12 1 6 133 1 0 4 0 1 69 1 0 4 0 1 81 10 32 201 0 1 74 0 4 88 5 6 867 1 0 128 chain 331856 chr11 135006516 + 103131885 103136105 L1PA8 5853 + 142 5853 12134 86 1 0 77 18 23 1472 0 4 101 0 2 111 16 0 73 0 4 11 0 1 238 8 4 482 5 8 95 0 4 577 0 13 133 2 4 67 28 0 275 0 1508 49 1 0 46 2 0 71 1 0 12 18 17 30 2 1 19 1 0 86 0 1 6 chain 71146 chr11 135006516 + 103142511 103143300 L1PA5 6144 + 5343 6132 47866 789 chain 9096 chr11 135006516 + 103160114 103160225 LTR8 732 - 621 732 165086 111 chain 50245 chr11 135006516 + 103166023 103166697 LTR76 689 + 0 689 58832 5 0 1 19 2 0 6 1 18 71 12 10 264 1 0 214 0 1 28 0 1 51 chain 36129 chr11 135006516 + 103207646 103208143 MER9a3 513 + 0 513 74728 18 4 17 76 0 1 144 6 5 29 7 9 134 4 5 75 chain 6762 chr11 135006516 + 103213509 103213615 LTR12F 595 + 485 595 179234 33 13 17 60 chain 59639 chr11 135006516 + 103213635 103214382 HERV9-int 5642 + 0 746 53029 162 0 4 374 0 4 57 5 2 113 6 0 30 chain 66127 chr11 135006516 + 103241130 103242457 L1M1 2793 + 493 1728 50036 6 1 0 11 1 0 9 6 3 12 8 6 14 2 0 8 3 0 5 1 0 12 1 0 11 2 0 5 237 150 13 11 8 6 2 0 30 1 0 25 0 3 9 1 0 54 13 10 45 0 4 51 1 0 36 3 12 36 1 0 85 16 15 24 0 6 31 2 0 21 11 8 118 0 1 225 0 5 21 0 2 22 2 1 56 chain 531892 chr11 135006516 + 103257229 103263360 L1PA4 6152 - 0 6151 3974 1251 1 0 201 0 1 70 1 0 635 0 3 52 0 1 40 3 0 195 0 1 263 0 1 184 0 4 175 0 1 1232 0 1 1250 3 0 164 0 1 270 0 14 141 chain 21076 chr11 135006516 + 103264459 103264774 THE1B 368 - 42 368 123639 93 2 1 40 2 0 7 24 23 97 0 9 6 0 6 44 chain 12753 chr11 135006516 + 103267516 103267685 L1PB4 2604 + 2398 2568 149242 89 0 2 63 1 0 16 chain 5195 chr11 135006516 + 103278049 103278110 tRNA-Gln-CAA_ 72 + 11 72 193093 61 chain 105908 chr11 135006516 + 103285759 103287029 L1PA6 6164 + 4869 6156 35278 259 4 0 164 7 28 506 0 1 37 1 0 110 2 3 5 1 0 174 chain 36947 chr11 135006516 + 103296635 103297092 MER9a3 513 + 0 472 73589 18 0 2 12 0 12 26 1 0 41 0 1 65 0 1 80 1 0 178 0 1 35 chain 2847 chr11 135006516 + 103298773 103298803 MLT2B2 565 - 470 500 227919 30 chain 3720 chr11 135006516 + 103328323 103328377 Tigger3b 1229 - 533 588 211650 14 3 4 37 chain 3999 chr11 135006516 + 103328590 103328663 Tigger3b 1229 - 502 579 207404 13 1 4 25 6 7 28 chain 29981 chr11 135006516 + 103330398 103330711 AluYb8 318 + 0 313 84867 313 chain 66765 chr11 135006516 + 103341154 103341907 L1PA4 6152 - 0 767 49748 14 0 3 129 1 8 603 0 4 6 chain 420109 chr11 135006516 + 103372206 103377336 L1PA7 6471 + 1282 6468 9532 349 7 8 35 13 14 171 0 1 300 0 5 197 10 14 8 1 0 4 0 1 252 1 0 17 0 15 427 0 4 396 1 0 29 1 0 481 0 11 327 1 4 309 3 10 153 3 5 309 0 1 214 0 1 179 7 6 8 0 1 18 0 1 54 0 3 684 2 1 159 chain 79773 chr11 135006516 + 103382032 103382929 L1PA3long 6157 - 0 899 43697 156 1 0 623 1 0 70 0 4 46 chain 6236 chr11 135006516 + 103383644 103383725 Tigger4b 360 - 0 89 183277 4 1 0 50 0 9 26 chain 8480 chr11 135006516 + 103407632 103407734 MER73 639 - 522 624 168403 102 chain 28435 chr11 135006516 + 103410837 103411134 AluYd8 298 - 0 297 91446 297 chain 17927 chr11 135006516 + 103438449 103438783 L1PB1 5432 - 10 315 133038 18 1 0 13 1 0 21 1 0 24 2 0 14 9 6 18 22 12 15 1 0 44 1 0 16 2 1 52 2 0 9 2 0 3 2 0 10 1 0 8 1 0 21 chain 33206 chr11 135006516 + 103442769 103443230 LTR2 463 + 0 463 78869 106 10 11 242 33 35 13 1 0 56 chain 266492 chr11 135006516 + 103445003 103448299 Harlequin-int 5206 + 125 3426 15367 17 3 1 94 0 5 52 2 1 5 1 0 70 0 3 109 0 1 178 2 0 16 2 1 16 0 1 427 1 2 83 0 3 220 0 1 69 7 8 330 1 0 730 10 0 279 1 0 4 1 2 232 0 1 38 1 2 195 6 11 94 chain 27897 chr11 135006516 + 103449379 103449845 LTR2 463 + 7 463 93379 158 33 25 60 6 3 46 5 6 5 1 0 49 37 39 9 1 0 56 chain 503706 chr11 135006516 + 103481959 103488179 L1PA6 6164 + 1 6149 6621 274 11 1 26 120 19 237 0 1 8 1 0 388 1 0 117 1 0 380 6 5 38 0 2 697 0 2 17 0 2 118 0 1 212 0 3 633 15 9 465 1 8 52 0 1 24 0 1 362 1 0 232 26 30 412 1 0 248 4 3 23 0 13 94 0 1 133 1 5 17 1 5 173 0 3 559 0 3 91 chain 7168 chr11 135006516 + 103482279 103482366 L1PA6 6164 - 4838 4925 176278 87 chain 32259 chr11 135006516 + 103491982 103492405 MLT2A1 477 + 0 469 80422 141 1 2 26 1 5 209 0 42 33 1 0 11 chain 4584 chr11 135006516 + 103502184 103502256 MER4D0 881 - 597 670 199816 37 10 11 25 chain 19625 chr11 135006516 + 103507236 103507522 AluY 311 + 11 297 128321 18 1 0 79 37 38 151 chain 3166 chr11 135006516 + 103519634 103519739 MIR 256 - 71 177 221608 32 53 54 20 chain 32300 chr11 135006516 + 103546219 103546645 L1PA8 5853 + 5432 5853 80364 132 1 0 44 2 0 74 1 0 5 14 13 60 1 0 16 0 1 76 chain 160389 chr11 135006516 + 103556303 103558714 L1PB1 5432 + 2960 5405 23288 283 20 22 82 0 7 129 0 6 123 2 0 40 12 47 33 1 0 70 1 2 399 10 9 249 10 12 75 0 9 65 1 2 19 1 0 63 17 17 187 1 2 163 48 30 33 1 0 4 3 2 11 22 16 49 18 16 45 1 0 6 1 0 5 3 15 17 37 32 16 1 0 20 1 0 13 chain 89310 chr11 135006516 + 103590113 103591440 L1PBa 3878 + 496 1819 39882 26 1 0 81 0 4 9 0 2 152 14 11 43 4 10 54 32 30 23 0 1 7 2 1 19 31 28 205 2 3 252 1 0 160 14 5 102 1 3 92 chain 424941 chr11 135006516 + 103609625 103614427 L1PA3long 6157 + 6 6157 9421 345 20 11 16 0 1 426 2 1367 3246 13 5 734 chain 397025 chr11 135006516 + 103628471 103633312 L1PA5 6144 + 1623 6139 10198 1974 327 0 115 7 6 729 0 3 770 1 2 72 3 0 24 1 2 490 1 2 327 chain 533669 chr11 135006516 + 103685545 103691672 L1PA5 6144 - 0 6141 3744 11 0 4 601 0 1 239 0 1 1081 0 1 439 0 1 83 1 0 512 1 0 1461 0 1 39 0 1 261 0 5 1199 0 1 199 chain 4332 chr11 135006516 + 103706333 103706385 L1PA15 4387 + 2694 2746 202808 52 chain 10890 chr11 135006516 + 103708362 103708487 L1PA2 6032 + 5900 6028 156622 112 0 3 13 chain 22223 chr11 135006516 + 103708487 103708978 L1PA15 4387 + 3845 4316 119251 24 0 1 14 3 1 20 0 2 18 8 10 78 6 0 10 21 21 52 23 22 13 16 15 39 1 0 4 6 0 14 0 2 7 28 21 30 10 7 46 chain 42052 chr11 135006516 + 103719055 103719603 MER41A 554 + 0 553 66554 53 10 11 224 0 9 97 12 14 126 7 0 19 chain 131775 chr11 135006516 + 103726130 103727900 L1PA10 4194 + 2403 4150 27679 201 13 14 11 0 1 26 3 1 19 3 7 278 4 5 475 10 7 644 49 24 34 chain 7052 chr11 135006516 + 103746045 103746129 MLT2C2 476 - 201 285 177092 84 chain 20760 chr11 135006516 + 103746147 103746390 AluSp 311 - 28 271 124754 243 chain 22453 chr11 135006516 + 103770442 103770713 AluY 311 + 27 299 118226 105 0 1 166 chain 23759 chr11 135006516 + 103770952 103771300 THE1B 368 + 0 353 111714 15 2 0 22 0 5 65 13 14 51 2 1 18 1 3 159 chain 48430 chr11 135006516 + 103773190 103773731 L1PA4 6152 + 5610 6152 60161 428 0 1 113 chain 513223 chr11 135006516 + 103781028 103787822 L1PA7 6471 + 0 6469 5860 195 4 3 263 0 21 79 0 1 85 5 0 229 1 2 140 30 138 753 10 11 341 1 0 47 4 5 319 2 0 229 18 0 639 1 0 37 7 11 180 450 0 202 1 3 397 0 1 528 0 6 120 1 0 168 4 5 199 0 1 139 2 1 71 0 1 51 0 3 512 0 1 319 0 2 11 chain 43248 chr11 135006516 + 103795549 103796063 L1PA7 6471 - 7 530 65120 197 0 9 317 chain 5878 chr11 135006516 + 103802935 103803058 Tigger5 388 + 102 215 186404 29 18 7 40 15 16 21 chain 183435 chr11 135006516 + 103808283 103810300 L1PA4 6152 - 1 2018 20637 2017 chain 105776 chr11 135006516 + 103826809 103827988 L1PA3long 6157 - 17 1201 35310 321 0 1 504 0 4 354 chain 36824 chr11 135006516 + 103827988 103828387 L1PA3long 6157 + 4539 4938 73772 399 chain 185104 chr11 135006516 + 103845208 103847626 L1PA8 5853 - 6 2348 20493 87 1 0 19 2 1 49 5 4 8 1 0 45 17 0 26 2 0 46 1 0 365 0 5 159 1 2 22 2 0 10 1 0 259 0 10 12 15 2 32 0 1 30 3 2 317 1 0 204 36 0 69 0 4 361 0 2 11 33 10 26 5 8 48 1 0 86 chain 49548 chr11 135006516 + 103847626 103848229 L1PA8 5853 + 2899 3502 58864 188 1 0 17 9 11 101 1 0 286 chain 44024 chr11 135006516 + 103853218 103853970 L1PA13 3608 + 2794 3522 64177 62 5 6 270 1 0 8 27 24 32 0 1 63 17 15 60 1 0 21 1 0 21 25 22 45 8 4 15 1 0 5 2 1 17 28 20 12 1 0 4 chain 3305 chr11 135006516 + 103877010 103877053 MER5A 189 + 147 189 218867 4 1 0 38 chain 70629 chr11 135006516 + 103917472 103918317 L1PA7 6471 - 2 850 48097 155 0 1 205 0 2 5 2 0 401 0 2 77 chain 249033 chr11 135006516 + 103970968 103973790 L1PA4 6152 + 3264 6125 16308 318 0 15 92 1 0 146 1 0 668 0 26 1596 chain 90895 chr11 135006516 + 103978891 103979939 L1PA5 6144 + 5089 6144 39326 74 1 4 127 0 1 4 1 4 841 chain 96368 chr11 135006516 + 103985649 103987207 L1PB1 5432 - 12 1403 37711 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 17 29 17 12 1 0 16 0 1 28 18 16 53 2 0 9 4 0 12 1 0 10 1 0 19 3 0 12 166 26 272 1 2 175 4 0 131 8 14 78 0 1 21 0 1 169 1 2 184 chain 75908 chr11 135006516 + 103987208 103988514 L1PB 1623 + 485 1442 45534 177 3 0 5 1 4 9 347 0 563 2 1 61 1 0 137 chain 25028 chr11 135006516 + 103987408 103987730 THE1A 353 + 0 333 104648 35 6 18 57 1 0 223 chain 27982 chr11 135006516 + 104010483 104010807 AluYb8 318 + 0 301 93061 118 23 0 183 chain 4335 chr11 135006516 + 104012070 104012117 U6 107 + 0 47 202772 47 chain 8797 chr11 135006516 + 104025539 104025646 MER58B 340 + 220 327 166663 107 chain 149381 chr11 135006516 + 104064529 104066375 SVA_F 1814 + 161 1814 24702 24 0 1 694 0 1 16 129 1 49 18 32 142 1 0 17 79 0 666 1 0 10 chain 11746 chr11 135006516 + 104065264 104065387 SVA_F 1814 + 1137 1260 153275 123 chain 5581 chr11 135006516 + 104065620 104065698 SVA_F 1814 + 1011 1089 130397 78 chain 119787 chr11 135006516 + 104082352 104084166 L1P1 4361 + 2827 4317 31126 267 0 1 75 1 0 267 2 0 140 0 1 96 3 0 6 0 3 5 325 0 84 0 1 174 1 3 32 1 2 164 1 0 157 1 0 12 chain 24756 chr11 135006516 + 104091866 104092161 AluY 311 + 13 300 106133 92 0 1 27 9 0 167 chain 21800 chr11 135006516 + 104102550 104102803 L1PA5 6144 - 176 441 121017 53 0 4 109 0 8 91 chain 135857 chr11 135006516 + 104121823 104123309 L1PA3long 6157 - 0 1485 26869 5 1 0 1480 chain 5933 chr11 135006516 + 104123310 104123377 5S 121 + 24 91 185846 67 chain 128687 chr11 135006516 + 104137273 104138896 L1PA7 6471 - 3 1630 28393 7 7 0 144 20 21 94 0 1 296 6 8 228 0 1 51 6 9 6 0 1 268 1 2 93 0 3 255 1 0 31 1 0 108 chain 85743 chr11 135006516 + 104138896 104139958 L1PA7 6471 + 3781 4834 41248 55 8 1 94 1 0 384 4 2 321 0 1 195 chain 12700 chr11 135006516 + 104149724 104149882 THE1B-int 1605 + 1447 1605 149448 158 chain 48853 chr11 135006516 + 104169707 104170290 L1PA7 6471 - 6 587 59836 6 2 0 575 chain 13357 chr11 135006516 + 104195401 104195615 L1PA14 3548 + 3251 3456 146857 38 2 3 40 1 0 11 5 1 32 2 0 17 1 0 5 1 0 16 1 0 42 chain 52846 chr11 135006516 + 104209873 104210729 LTR12 884 + 0 884 57104 32 1 2 5 1 0 41 0 132 164 2 0 80 35 36 85 104 0 131 1 0 68 16 18 90 chain 4934 chr11 135006516 + 104210366 104210423 LTR12 884 + 623 680 167440 57 chain 12721 chr11 135006516 + 104236558 104236989 LTR12D 1347 - 227 901 149368 19 6 7 11 1 0 30 214 288 54 19 188 77 chain 2083 chr11 135006516 + 104236807 104236829 LTR12D 1347 - 598 620 237845 22 chain 6498 chr11 135006516 + 104237012 104237091 LTR12D 1347 - 654 735 181269 42 0 2 37 chain 56685 chr11 135006516 + 104268490 104269203 LTR12 884 - 0 884 54729 173 0 13 54 0 1 246 3 5 16 2 0 11 0 157 208 chain 36001 chr11 135006516 + 104281224 104281675 LTR12F 595 - 0 595 74894 22 1 2 333 0 143 95 chain 7619 chr11 135006516 + 104286532 104286626 Tigger1 2417 - 72 166 173423 94 chain 127271 chr11 135006516 + 104292033 104293722 LTR12C 1709 - 0 1709 28749 84 8 7 390 2 6 104 4 2 4 1 0 163 98 0 112 1 0 46 1 119 160 9 10 502 chain 2229 chr11 135006516 + 104292835 104292876 LTR12C 1709 - 913 954 172445 41 chain 27519 chr11 135006516 + 104300889 104301288 L1PB1 5432 - 329 755 94603 17 15 35 97 0 2 121 22 27 127 chain 49432 chr11 135006516 + 104307988 104308535 L1PA3long 6157 - 0 548 59433 4 0 1 543 chain 37763 chr11 135006516 + 104308535 104308939 L1PA3long 6157 + 5201 5605 72474 404 chain 9472 chr11 135006516 + 104311135 104311260 L1PA7 6471 - 879 996 162840 25 1 0 70 7 0 22 chain 71428 chr11 135006516 + 104311260 104312137 L1PA7 6471 + 5583 6464 47729 34 1 4 743 1 2 98 chain 13038 chr11 135006516 + 104334560 104334797 MER47A 366 - 41 273 148090 17 19 20 32 11 9 53 9 5 69 0 1 4 1 0 22 chain 11782 chr11 135006516 + 104360921 104361066 LTR8 732 + 587 732 153123 145 chain 177114 chr11 135006516 + 104369627 104371799 L1PA8A 6298 + 4097 6277 21239 1195 1 0 5 1 2 175 4 5 8 0 4 350 0 1 71 0 1 268 1 8 7 6 0 80 chain 16555 chr11 135006516 + 104395540 104395880 L1PB1 5432 - 8 318 136780 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 6 4 19 30 19 9 1 0 44 1 0 16 2 1 53 2 0 7 18 13 13 1 0 20 chain 19217 chr11 135006516 + 104410819 104411055 L1PA5 6144 - 0 249 129481 5 3 0 187 0 16 41 chain 49023 chr11 135006516 + 104415184 104416096 L1PA7 6471 + 5868 6470 59730 356 4 7 21 313 0 218 chain 46430 chr11 135006516 + 104434081 104434722 LTR12C 1709 - 0 936 61656 82 1 0 86 1 0 73 23 0 77 14 16 147 20 13 53 0 325 64 chain 29386 chr11 135006516 + 104434790 104435098 AluYb8 318 + 0 308 87134 308 chain 2870 chr11 135006516 + 104435375 104435411 LTR12C 1709 - 514 550 227538 36 chain 4596 chr11 135006516 + 104442327 104442382 L1MA7 2200 - 533 588 199674 55 chain 14025 chr11 135006516 + 104471984 104472338 L1PB1 5432 + 5105 5422 144481 11 7 0 22 1 0 4 3 2 10 28 22 44 5 4 13 1 0 44 1 0 15 28 17 11 27 22 24 1 0 21 1 0 13 1 0 18 chain 56583 chr11 135006516 + 104475924 104476638 L1PA7 6471 + 5743 6461 54797 355 4 6 260 1 2 31 11 12 52 chain 41423 chr11 135006516 + 104486801 104487295 L1PA7 6471 - 7 501 67389 494 chain 59464 chr11 135006516 + 104487296 104488025 L1PA7 6471 + 5242 5965 53136 86 14 5 266 0 4 21 1 0 79 0 1 227 1 0 34 chain 52541 chr11 135006516 + 104498924 104499528 L1PA5 6144 - 15 618 57270 45 1 0 558 chain 4216 chr11 135006516 + 104535496 104535543 MSTB1 431 + 342 389 204338 47 chain 12164 chr11 135006516 + 104545671 104545867 L1PA16 3655 - 197 380 151561 27 28 17 123 2 0 16 chain 129469 chr11 135006516 + 104546195 104547572 L1HS 6032 - 61 1438 28209 1377 chain 8879 chr11 135006516 + 104599911 104600041 THE1D 372 + 185 333 166233 6 0 2 24 0 1 6 10 25 84 chain 20530 chr11 135006516 + 104616929 104617189 L1PA6 6164 + 5900 6162 125544 76 1 2 32 0 1 151 chain 45055 chr11 135006516 + 104618643 104619190 MER41A 554 + 0 554 62988 196 0 1 18 0 6 333 chain 7279 chr11 135006516 + 104619939 104620051 MER30 238 + 131 238 175585 7 2 0 61 7 4 35 chain 39690 chr11 135006516 + 104639374 104639875 MER41A 554 - 21 531 69768 60 0 5 149 0 1 121 0 1 27 0 2 144 chain 33449 chr11 135006516 + 104641022 104641473 MER4A1 472 - 0 470 78488 54 6 7 136 6 23 198 0 1 51 chain 34298 chr11 135006516 + 104652377 104652886 PRIMA4_LTR 623 + 0 623 77215 175 0 23 55 10 12 96 28 115 36 0 1 33 8 9 68 chain 38010 chr11 135006516 + 104678611 104679073 L1PA5 6144 + 5670 6132 72118 141 1 0 180 11 12 129 chain 3698 chr11 135006516 + 104734786 104735037 L1MC1 2226 + 1584 1832 211959 23 194 191 34 chain 28316 chr11 135006516 + 104755462 104755870 L1PA8 5853 + 5447 5852 91880 22 0 3 36 7 8 48 2 1 46 3 1 67 1 0 9 2 1 49 4 3 19 1 0 92 chain 5133 chr11 135006516 + 104756198 104756314 L1PB1 5432 + 5308 5424 193749 18 9 6 14 2 0 16 1 8 21 1 0 13 6 5 15 chain 3535 chr11 135006516 + 104760288 104760334 MER5A1 166 + 60 106 214797 46 chain 509826 chr11 135006516 + 104790938 104797190 L1PA6 6164 - 15 6157 6182 770 1 0 56 0 4 299 0 1 204 7 5 7 0 2 318 8 15 7 2 0 210 0 1 70 0 1 367 0 1 204 0 1 415 0 1 12 2 1 70 0 7 62 0 1 157 0 1 554 22 0 860 127 0 641 0 17 240 1 0 48 5 6 506 chain 452643 chr11 135006516 + 104797599 104803877 L1PA8A 6298 + 34 6272 8669 6 1 0 16 1 0 11 52 38 14 0 3 5 16 5 15 2 1 9 2 1 12 68 59 6 1 0 7 1 0 8 23 18 27 16 15 20 8 0 77 2 0 15 1 0 8 9 7 27 1 0 48 1 0 257 0 1 32 8 4 66 18 14 52 1 0 90 5 10 64 3 0 30 15 13 357 0 2 117 1 0 461 0 17 119 1 0 287 18 0 458 0 1 141 0 1 288 1 0 19 0 4 152 0 2 127 1 0 88 0 9 76 0 1 108 1 2 374 1 2 137 2 1 328 1 0 8 0 1 27 1 2 421 13 11 190 2 0 84 0 2 152 0 6 205 8 7 86 0 6 240 chain 76615 chr11 135006516 + 104843295 104844299 MER11C 1089 + 0 1048 45155 263 1 4 52 1 18 178 0 13 8 65 67 171 0 8 261 0 1 4 chain 56676 chr11 135006516 + 104845164 104845902 MER4E1 777 - 7 755 54737 78 1 0 5 1 0 136 10 18 392 12 16 103 chain 546483 chr11 135006516 + 104887022 104893046 L1PA3long 6157 + 1 6156 1887 6 3 0 53 0 1 91 0 1 173 0 3 381 1 0 71 0 128 303 0 1 994 0 2 2348 1 0 1599 chain 6319 chr11 135006516 + 104954182 104954264 L1PA10 4194 + 1603 1683 182654 31 2 0 49 chain 21682 chr11 135006516 + 105003297 105003549 L1PA5 6144 - 5 258 121459 188 1 2 63 chain 45348 chr11 135006516 + 105039997 105040966 L1PB1 5432 - 2 840 62657 8 2 0 18 1 0 13 1 0 21 0 1 4 11 9 10 2 0 13 2 1 5 2 0 30 14 1 15 1 0 39 6 5 15 4 3 52 2 0 5 167 68 73 4 0 7 0 4 13 4 3 176 33 30 21 4 5 54 0 1 51 0 1 29 3 0 34 chain 26982 chr11 135006516 + 105048969 105049274 AluYk4 311 + 0 303 96342 132 2 0 171 chain 21140 chr11 135006516 + 105108561 105108799 L1PA7 6471 - 14 252 123405 238 chain 73724 chr11 135006516 + 105135577 105136481 LTR5_Hs 974 + 0 912 46663 100 0 1 46 5 4 307 0 4 16 0 2 410 0 2 20 chain 363818 chr11 135006516 + 105162532 105167190 L1PA8 5853 - 0 5726 11266 83 11 10 19 2 1 61 1 0 71 2 0 46 1 0 335 0 6 2 6 0 210 18 17 48 13 17 264 0 1 98 14 20 139 1 2 202 0 2 328 0 1 335 1 12 133 1 4 171 0 1 361 3 0 155 20 18 138 0 1 263 0 4 222 0 1048 251 0 1 84 3 1 42 0 4 76 5 6 35 0 1 195 19 7 139 0 4 31 chain 24404 chr11 135006516 + 105170410 105170861 L1PA8 5853 + 5413 5853 108057 151 28 27 17 2 0 51 10 0 9 0 1 9 61 63 15 6 5 92 chain 113462 chr11 135006516 + 105207697 105209262 L1PA11 4918 + 2930 4504 33235 100 2 20 329 37 38 11 1 3 235 1 0 357 0 1 54 1 0 250 5 0 60 7 6 13 11 9 58 2 0 15 1 0 15 chain 19925 chr11 135006516 + 105212344 105212606 L1PA8 5853 - 1513 1791 127379 144 0 16 118 chain 29666 chr11 135006516 + 105212606 105212976 L1PA8 5853 - 1799 2169 85974 370 chain 49751 chr11 135006516 + 105212980 105213605 L1PA8 5853 - 2169 2792 59193 296 1 0 161 9 8 158 chain 113388 chr11 135006516 + 105213605 105215093 L1PA8 5853 + 4370 5853 33255 631 1 0 8 2 0 48 5 4 121 0 1 25 0 3 27 2 5 321 1 0 44 2 0 70 2 1 14 9 7 40 2 1 21 1 0 91 chain 21667 chr11 135006516 + 105219743 105219977 L1PA3long 6157 - 765 999 121515 234 chain 68949 chr11 135006516 + 105219977 105220736 L1PA3long 6157 + 5398 6157 48837 759 chain 9515 chr11 135006516 + 105280336 105280443 L1PA4 6152 - 16 123 163000 107 chain 137851 chr11 135006516 + 105283977 105285514 L1PA4 6152 + 4350 5891 26505 1341 0 2 45 0 1 93 0 1 58 chain 29383 chr11 135006516 + 105291944 105292253 AluYb8 318 + 0 309 87154 309 chain 2653 chr11 135006516 + 105331643 105331680 L1MA3 4352 + 90 126 230985 14 1 0 22 chain 88640 chr11 135006516 + 105332840 105333821 L1PA3long 6157 + 5157 6157 40131 205 0 3 533 1 0 75 0 17 167 chain 16002 chr11 135006516 + 105342354 105342570 L1PA8 5853 + 5635 5849 138340 44 1 0 9 1 0 52 2 1 11 0 2 6 1 0 89 chain 3575 chr11 135006516 + 105400442 105400533 L1PREC2 3366 + 2932 3006 214068 19 4 1 11 24 10 33 chain 23518 chr11 135006516 + 105430919 105431203 AluY 311 + 14 309 113026 161 8 19 115 chain 12632 chr11 135006516 + 105446123 105446262 L1PA3long 6157 + 6018 6157 149722 139 chain 7489 chr11 135006516 + 105450818 105450907 L1PA7 6471 - 257 346 174210 89 chain 17306 chr11 135006516 + 105450914 105451187 L1PA7 6471 + 6186 6459 134773 200 43 7 9 0 36 21 chain 11969 chr11 135006516 + 105454526 105454712 Tigger3b 1229 + 940 1158 152328 16 6 7 18 0 1 13 0 16 62 8 22 63 chain 7372 chr11 135006516 + 105499649 105499743 L1P1 4361 + 4219 4312 174957 86 1 0 7 chain 72974 chr11 135006516 + 105526066 105526955 L1PA7 6471 - 2 898 47038 10 2 0 221 7 12 89 0 1 517 2 5 41 chain 32173 chr11 135006516 + 105526955 105527361 L1PA7 6471 + 5166 5571 80437 29 2 3 146 7 5 222 chain 4482 chr11 135006516 + 105581941 105581992 L1PA4 6152 - 170 221 200990 51 chain 12963 chr11 135006516 + 105582007 105582161 L1PA4 6152 + 5997 6148 148378 138 3 0 13 chain 13429 chr11 135006516 + 105588613 105588763 L1PA3long 6157 + 5799 5950 146581 90 0 1 60 chain 514757 chr11 135006516 + 105596326 105602757 L1PA7 6471 + 3 6465 5695 191 6 7 210 0 1 59 0 3 511 9 19 658 0 1 121 0 1 28 6 12 26 0 1 142 0 2 524 0 2 114 1 3 179 1 21 270 6 8 219 1 0 270 0 1 217 7 6 110 4 0 350 40 19 333 0 1 104 0 1 102 0 1 529 10 11 230 1 0 18 0 1 63 1 2 434 1 0 190 0 1 135 chain 39841 chr11 135006516 + 105649513 105649959 L1PA4 6152 - 1 447 69550 446 chain 9656 chr11 135006516 + 105650265 105650372 L1PA2 6032 + 5924 6030 162319 88 1 0 18 chain 3144 chr11 135006516 + 105682348 105682383 MER53 195 - 23 58 222079 35 chain 5912 chr11 135006516 + 105695359 105695428 U4 144 + 0 69 186070 69 chain 23486 chr11 135006516 + 105707642 105708016 THE1D 372 - 0 372 113191 63 0 1 74 42 46 123 18 9 41 0 2 13 chain 6780 chr11 135006516 + 105717698 105717809 MER1B 344 - 5 136 179109 53 11 32 32 3 2 12 chain 527586 chr11 135006516 + 105743658 105750070 L1PA7 6471 - 5 6466 4440 12 0 2 319 0 2 171 2 0 115 4 3 4 0 1 32 0 3 102 15 17 62 1 4 626 7 6 305 0 4 46 0 1 793 0 1 311 0 1 37 3 2 851 0 1 77 1 2 120 1 2 82 1 0 48 0 4 40 0 2 478 0 1 557 2 0 14 11 0 10 0 11 526 0 25 164 1 0 64 0 2 331 0 1 66 chain 56613 chr11 135006516 + 105754006 105754663 L1PA5 6144 - 0 659 54769 11 1 3 4 1 0 136 0 1 504 chain 11845 chr11 135006516 + 105754663 105754791 L1PA5 6144 + 5355 5483 152850 128 chain 28951 chr11 135006516 + 105758998 105759311 AluYa5 310 - 0 310 89214 184 3 0 126 chain 29426 chr11 135006516 + 105765517 105765824 AluYb8 318 - 11 318 86961 307 chain 75840 chr11 135006516 + 105825899 105826845 L1PA8A 6298 - 7 953 45579 178 2 0 181 1 0 4 0 1 45 0 2 74 0 2 173 3 0 57 0 1 88 1 0 114 0 1 25 chain 224875 chr11 135006516 + 105826855 105829451 L1PA5 6144 - 14 2611 17606 31 7 11 282 0 1 511 1 0 276 1 0 1100 1 0 243 2 0 20 0 1 121 chain 74099 chr11 135006516 + 105873425 105874518 MER11B 1079 + 0 1079 46461 51 0 3 403 18 17 22 24 12 15 0 1 70 0 1 125 1 0 14 75 69 22 0 1 53 0 1 169 2 1 29 chain 13265 chr11 135006516 + 105897886 105898103 THE1B 368 + 144 368 147231 28 2 1 28 34 42 125 chain 8640 chr11 135006516 + 105902818 105903205 MLT1D 503 + 60 503 167536 21 186 195 16 66 113 98 chain 4324 chr11 135006516 + 105912142 105912244 MER3 215 + 53 157 202904 44 38 40 20 chain 21416 chr11 135006516 + 105952506 105952742 L1PA3long 6157 + 5918 6155 122458 82 0 1 154 chain 213251 chr11 135006516 + 105985558 105988252 HERVL-int 5654 + 2964 5654 18279 304 3 0 414 0 1 349 0 3 268 13 0 275 2 6 28 0 6 345 0 2 211 1 0 112 1 0 17 8 0 7 0 8 86 0 2 21 4 0 99 1 0 4 0 1 121 chain 42872 chr11 135006516 + 105992999 105993477 L1PA4 6152 - 2150 2629 65353 223 0 1 255 chain 193775 chr11 135006516 + 105993477 105995612 L1PA4 6152 + 4017 6152 19704 2135 chain 26132 chr11 135006516 + 106012495 106012853 MER83B 357 + 9 346 99476 122 0 9 18 31 1 187 chain 22495 chr11 135006516 + 106017326 106017669 MER83B 357 + 0 316 118049 17 5 0 114 43 21 164 chain 5287 chr11 135006516 + 106024129 106024188 MER53 195 + 0 59 192140 59 chain 45345 chr11 135006516 + 106041378 106041930 MER41A 554 + 0 554 62662 378 0 1 64 0 1 110 chain 51664 chr11 135006516 + 106044535 106045126 LTR10C 591 - 0 591 57851 591 chain 11727 chr11 135006516 + 106048426 106048635 MER4A1 472 + 86 323 153360 18 1 11 79 41 59 70 chain 111987 chr11 135006516 + 106051007 106052351 L1PA7 6471 - 2 1342 33671 8 2 0 746 0 3 9 8 6 69 8 4 316 0 1 178 chain 90479 chr11 135006516 + 106052351 106053492 L1P2 5180 + 1592 2743 39410 293 0 1 433 6 0 62 0 2 42 5 8 104 1 4 34 2 9 159 chain 116176 chr11 135006516 + 106059498 106061383 MER57-int 2662 + 760 2659 32387 110 0 8 225 1 5 33 0 3 130 20 21 4 1 0 10 0 3 28 34 39 20 1 0 60 2 0 22 3 5 111 4 20 98 7 5 6 0 2 181 12 9 29 3 2 131 0 3 65 0 1 100 0 1 21 0 6 23 0 1 26 7 6 42 19 24 14 5 0 9 2 1 10 8 3 68 127 105 15 4 1 34 chain 59414 chr11 135006516 + 106121488 106122244 LTR17 781 + 0 781 53164 9 0 1 316 2 1 117 8 11 261 0 22 43 chain 8492 chr11 135006516 + 106131299 106131425 MER1A 529 - 14 143 168337 46 9 12 71 chain 38864 chr11 135006516 + 106136096 106136696 L1MA2 4263 - 152 767 70927 6 1 0 47 0 11 13 6 7 62 2 1 158 16 13 22 0 1 61 0 1 36 21 32 55 5 1 17 1 0 71 chain 3975 chr11 135006516 + 106138757 106138799 THE1B-int 1605 + 1545 1587 207773 42 chain 15376 chr11 135006516 + 106139241 106139458 L1PA8 5853 - 0 214 140272 91 1 0 17 8 7 58 1 0 41 chain 134439 chr11 135006516 + 106187426 106189041 SVA_D 2077 - 17 2053 27123 610 0 1 10 0 1 15 32 35 30 1 2 14 0 2 25 12 13 10 0 396 177 0 37 645 21 0 13 chain 24282 chr11 135006516 + 106203300 106203587 AluY 311 + 10 298 108757 119 1 2 167 chain 471577 chr11 135006516 + 106205183 106210382 L1PA3long 6157 - 1 5198 7983 128 4 3 2626 1 0 136 2 1 53 1 0 518 0 1 900 0 1 830 chain 2697 chr11 135006516 + 106218325 106218358 L1MA7 2200 - 176 208 230249 26 1 0 6 chain 158506 chr11 135006516 + 106258088 106259879 L1PA5 6144 - 12 1802 23531 416 0 1 243 1 0 643 1 0 487 chain 6580 chr11 135006516 + 106284035 106284118 MLT1B 390 - 24 107 180608 83 chain 27798 chr11 135006516 + 106321483 106321776 AluYa5 310 - 5 299 93705 186 0 1 107 chain 55341 chr11 135006516 + 106406746 106407510 L1PA8 5853 + 5100 5853 55495 430 0 1 33 1 0 61 7 0 53 23 21 4 0 1 4 1 0 31 3 2 19 2 1 92 chain 69032 chr11 135006516 + 106412436 106413192 L1PA3long 6157 - 0 754 48792 15 3 0 318 0 1 420 chain 6025 chr11 135006516 + 106433180 106433263 MLT1A1 405 + 271 356 185025 14 3 5 66 chain 13332 chr11 135006516 + 106445516 106445790 L1PB1 5432 - 24 274 146968 4 1 0 12 2 1 21 1 0 17 31 26 18 20 8 64 1 0 18 3 2 47 3 1 11 chain 112044 chr11 135006516 + 106519354 106520883 THE1B-int 1605 - 7 1605 33652 50 0 4 518 18 15 125 9 18 139 20 35 11 2 1 38 3 0 5 6 9 33 9 8 15 0 17 85 7 9 12 9 34 354 8 10 53 chain 16635 chr11 135006516 + 106539484 106539710 L1PB4 2604 + 2139 2374 136570 171 5 14 50 chain 26228 chr11 135006516 + 106595887 106596164 AluYa5 310 - 0 277 99098 277 chain 161402 chr11 135006516 + 106608123 106610086 L1PA7 6471 - 1 1975 23135 4 1 0 7 2 0 126 0 1 4 1 0 17 5 4 20 0 1 296 0 3 287 0 2 40 0 1 18 0 1 7 0 1 9 4 3 352 1 0 4 0 1 312 1 0 56 0 1 327 6 13 56 chain 490313 chr11 135006516 + 106623099 106629361 L1PA6 6164 - 6 6164 7349 97 1 4 40 1 0 5 1 2 95 0 1 82 0 1 342 0 1 7 24 16 350 0 2 32 0 1 181 0 10 1033 0 1 283 0 1 9 0 1 50 0 4 237 0 4 66 1 2 13 2 0 94 0 1 760 1 2 279 0 1 805 1 0 186 12 12 33 0 1 21 4 5 181 0 17 43 22 1 177 75 0 117 19 0 89 36 9 155 39 35 161 chain 22607 chr11 135006516 + 106644865 106645153 AluSg7 307 - 15 305 117560 57 0 1 181 5 6 45 chain 30596 chr11 135006516 + 106648191 106648566 L1PA7 6471 + 6095 6466 83203 252 0 1 69 1 0 41 4 0 8 chain 3544 chr11 135006516 + 106648847 106648886 MADE1 96 + 57 96 214650 39 chain 41039 chr11 135006516 + 106662600 106663480 L1PREC2 3366 + 1644 2209 67843 50 0 3 79 9 5 82 324 11 120 1 0 215 chain 129040 chr11 135006516 + 106666614 106668078 L1PA5 6144 - 3582 5082 28283 249 0 1 145 0 1 199 0 32 717 0 1 107 0 1 47 chain 312821 chr11 135006516 + 106668078 106671624 L1PA5 6144 + 2551 6144 12897 193 0 14 294 0 1 175 4 3 48 0 4 910 0 2 159 1 18 307 1 7 605 5 9 844 chain 39179 chr11 135006516 + 106678320 106678872 MLT2A2 560 + 0 560 70490 180 1 0 12 24 23 110 1 0 5 7 8 43 1 0 21 0 11 147 chain 7856 chr11 135006516 + 106694458 106694638 L1PA17 2846 - 153 339 171960 38 15 14 9 1 0 13 32 29 57 1 0 7 0 12 7 chain 10446 chr11 135006516 + 106696078 106696227 MER30 238 - 0 167 158511 111 7 22 11 0 3 20 chain 55019 chr11 135006516 + 106700317 106701081 HERVL-int 5654 + 4899 5654 55696 65 15 7 25 1 0 124 5 0 96 1 0 8 6 7 192 10 11 50 6 7 87 0 3 73 chain 8813 chr11 135006516 + 106708348 106708473 Tigger2b_Pri 1066 - 942 1066 166595 43 1 0 26 2 0 5 0 2 48 chain 55725 chr11 135006516 + 106709394 106710030 L1PA5 6144 - 686 1328 55288 86 0 2 22 2 1 46 0 4 256 0 1 224 chain 62867 chr11 135006516 + 106710030 106710731 L1PA5 6144 + 5429 6130 51500 701 chain 3850 chr11 135006516 + 106714725 106714770 L1P5 443 + 319 364 209641 45 chain 54121 chr11 135006516 + 106735466 106736155 L1P3 4156 - 17 735 56279 24 2 1 7 2 0 10 1 0 188 1 0 70 6 27 217 1 5 42 0 9 118 chain 28735 chr11 135006516 + 106736157 106736530 L1PA7 6471 + 6091 6464 90185 207 24 24 142 chain 171926 chr11 135006516 + 106739018 106740988 L1PA5 6144 + 4168 6141 21823 716 1 0 430 0 1 164 1 2 37 0 1 369 1 2 251 chain 77794 chr11 135006516 + 106743551 106744539 L1PA8A 6298 - 12 1001 44618 79 1 0 14 7 0 7 4 11 74 5 6 515 0 1 86 5 4 22 0 1 169 chain 6076 chr11 135006516 + 106750782 106750856 LTR32 486 + 0 74 184604 74 chain 17950 chr11 135006516 + 106754556 106754769 L1PA5 6144 + 5774 5988 132982 179 2 3 32 chain 12284 chr11 135006516 + 106754769 106754918 L1PA5 6144 + 5995 6144 151063 149 chain 24839 chr11 135006516 + 106758902 106759210 AluY 311 + 0 297 105679 126 6 0 162 5 0 9 chain 36743 chr11 135006516 + 106772233 106772668 L1PA5 6144 - 12 454 73888 120 6 13 309 chain 4015 chr11 135006516 + 106776357 106776467 MER65D 500 + 0 112 207170 4 0 1 28 48 49 30 chain 95332 chr11 135006516 + 106776644 106777803 L1PA7 6471 + 5285 6452 38001 335 1 4 265 10 14 233 0 1 315 chain 43207 chr11 135006516 + 106778133 106778602 L1PA3long 6157 - 0 469 65163 469 chain 45934 chr11 135006516 + 106788151 106788668 L1PA4 6152 + 5623 6140 62098 517 chain 399188 chr11 135006516 + 106821518 106827186 L1PA8A 6298 - 7 5153 10131 93 7 0 10 1 8 610 0 2 83 16 14 41 6 11 358 1 0 366 1 0 63 0 1 201 291 0 177 0 1 68 0 3 39 0 3 187 1 2 77 1 4 160 6 4 256 1 8 74 3 5 229 0 3 149 8 12 87 2 1 119 0 4 168 11 15 5 0 1 6 1 0 56 4 0 137 304 0 35 0 7 290 13 19 125 5 6 234 10 20 198 0 7 138 7 15 11 5 8 108 1 0 4 chain 31958 chr11 135006516 + 106902537 106903025 L1PA16 3655 + 3110 3590 80925 94 1 0 70 1 0 16 2 0 61 29 28 6 0 2 28 8 9 21 1 0 133 3 0 6 2 0 6 chain 103616 chr11 135006516 + 106921597 106923018 THE1B-int 1605 + 0 1593 35826 432 24 49 213 28 34 99 11 12 291 0 140 75 1 2 102 4 7 88 4 0 49 chain 12212 chr11 135006516 + 106925423 106925573 L1PBa 3878 + 1263 1414 151375 137 0 1 13 chain 25645 chr11 135006516 + 106930118 106930525 L1PB4 2604 + 2121 2539 101516 38 9 11 29 18 19 62 9 8 7 0 12 79 2 0 22 1 0 131 chain 60262 chr11 135006516 + 106946670 106947419 MER4E 760 + 24 760 52703 140 2 0 100 1 0 4 0 1 18 1 0 246 10 1 194 1 0 32 chain 52929 chr11 135006516 + 106960079 106960675 L1PA4 6152 + 5554 6152 57064 447 4 3 132 0 3 13 chain 96841 chr11 135006516 + 106967971 106969207 L1PA7 6471 + 4933 6470 37600 165 15 291 93 0 1 139 0 5 88 0 10 246 0 1 50 7 14 95 0 1 338 chain 89004 chr11 135006516 + 106969235 106970595 L1PB1 5432 + 4108 5419 40004 207 0 1 135 0 4 175 3 0 124 7 10 41 2 10 285 43 14 24 1 0 9 1 0 5 10 6 9 2 0 53 2 1 15 1 0 44 1 0 16 14 1 11 1 0 17 26 21 24 1 0 21 2 1 12 1 0 15 chain 4178 chr11 135006516 + 106980156 106980245 L1PB3 3668 + 3482 3566 204846 13 2 0 8 2 1 26 10 8 28 chain 17322 chr11 135006516 + 106994872 106995111 L1M1 2793 + 2450 2685 134726 25 0 2 71 4 0 80 1 0 45 1 0 12 chain 12531 chr11 135006516 + 107006001 107006141 MER107 203 + 5 145 150114 140 chain 3080 chr11 135006516 + 107027559 107027593 MER65A 464 + 0 34 223342 34 chain 6191 chr11 135006516 + 107065253 107065320 L1PA5 6144 - 1568 1635 183646 67 chain 135404 chr11 135006516 + 107065320 107066828 L1PA5 6144 + 4628 6136 26938 1508 chain 34798 chr11 135006516 + 107090244 107090713 MER4A1 472 + 0 472 76483 235 17 18 142 10 12 65 chain 33085 chr11 135006516 + 107102663 107103079 MLT2A1 477 - 66 477 79070 26 5 0 180 0 1 13 0 1 7 0 1 13 5 2 167 chain 450228 chr11 135006516 + 107103084 107108513 HERVL-int 5654 - 5 5654 8763 43 0 15 5 0 2 298 0 3 128 12 0 444 0 188 70 0 3 172 9 10 42 0 2 542 0 1 43 0 3 66 0 2 382 1 2 192 4 3 601 4 5 467 0 1 198 0 1 840 0 5 220 0 1 312 1 2 192 0 2 141 chain 30140 chr11 135006516 + 107108513 107108957 MLT2A1 477 - 0 477 84351 37 23 55 170 19 21 14 0 1 10 5 2 24 0 1 142 chain 28416 chr11 135006516 + 107109146 107109509 THE1B 368 + 0 368 91518 40 0 15 120 1 0 112 12 3 78 chain 4820 chr11 135006516 + 107110269 107110328 LTR79 453 - 69 128 197117 59 chain 7979 chr11 135006516 + 107114404 107114496 L1PA4 6152 - 0 92 171172 92 chain 35203 chr11 135006516 + 107124391 107124855 LTR2 463 + 0 463 75915 61 0 3 316 17 18 13 1 0 17 3 0 11 1 0 24 chain 42181 chr11 135006516 + 107125655 107126146 LTR2C 499 - 0 493 66420 63 0 1 294 0 1 134 chain 24929 chr11 135006516 + 107138764 107139076 AluSp 311 - 7 311 105167 98 16 5 107 0 3 91 chain 24151 chr11 135006516 + 107143228 107143630 LTR3A 482 - 62 455 109469 14 5 4 21 0 1 72 13 14 21 56 45 118 0 1 82 chain 164239 chr11 135006516 + 107150714 107152568 L1PA5 6144 - 15 1871 22776 177 0 1 664 1 0 807 0 2 205 chain 18680 chr11 135006516 + 107162726 107163300 L1MA4A 3247 - 1083 1610 131000 24 32 27 42 102 75 11 10 6 13 8 5 6 1 0 41 98 92 49 2 0 49 6 7 80 chain 485043 chr11 135006516 + 107164455 107170546 L1PA5 6144 + 4 6143 7558 103 13 27 75 3 2 276 0 1 26 10 11 7 0 2 48 1 0 17 2 3 46 1 8 7 7 0 210 0 11 30 0 17 23 33 9 144 5 4 54 13 4 21 10 9 351 1 0 28 1 2 592 0 2 20 0 2 1410 0 1 98 0 1 467 1 0 171 0 6 74 0 1 869 14 16 589 0 13 25 0 11 195 chain 24146 chr11 135006516 + 107196101 107196431 L1PA7 6471 + 6161 6465 109491 45 29 5 104 1 0 9 0 1 134 2 0 6 chain 5138 chr11 135006516 + 107225507 107225583 Tigger4 2445 - 1492 1569 193701 33 3 4 40 chain 550958 chr11 135006516 + 107232536 107238565 L1PA2 6032 + 0 6029 1319 398 0 1 37 1 0 305 0 1 851 0 1 4424 3 1 10 chain 4927 chr11 135006516 + 107238565 107238619 L1PB4 2604 - 1672 1726 194945 54 chain 544169 chr11 135006516 + 107243488 107249502 L1PA3long 6157 + 2 6156 2195 150 0 1 102 0 1 142 0 1 380 1 129 49 0 1 2303 0 8 2887 chain 39534 chr11 135006516 + 107261476 107262004 MLT2A2 560 + 0 560 69980 172 21 37 82 0 1 4 1 0 103 3 14 37 0 1 99 0 4 6 chain 27091 chr11 135006516 + 107265771 107266138 THE1B 368 + 0 368 95968 12 6 4 24 0 5 127 15 14 107 1 0 75 chain 398851 chr11 135006516 + 107268523 107273956 L1PB1 5432 + 79 5409 10143 54 0 3 172 12 1 154 3 0 788 6 2 23 35 17 33 8 12 52 1 0 5 1 0 6 3 0 5 15 12 56 4 0 345 0 7 419 1 0 110 0 1 135 0 1 4 10 5 76 0 5 23 21 21 216 1 0 796 1 0 94 13 0 224 1 0 23 6 7 34 0 1 386 0 1 4 1 0 61 0 1 155 7 6 468 35 11 24 1 0 9 16 11 11 3 1 50 22 20 13 2 0 28 1 0 15 3 0 3 9 0 28 8 5 14 3 1 13 0 1 9 1 0 21 1 0 13 1 0 5 chain 4068 chr11 135006516 + 107283633 107283685 L1MC1 2226 + 1993 2047 206336 33 0 2 19 chain 528768 chr11 135006516 + 107331269 107337639 L1PA7 6471 - 18 6470 4330 171 0 1 45 0 4 95 0 1 133 0 2 255 0 1 121 0 3 110 0 2 1072 2 0 158 2 1 268 9 6 397 0 1 38 0 1 19 0 4 13 1 2 302 0 1 126 0 4 1079 38 16 896 0 86 127 5 1 180 33 34 265 0 1 410 chain 44202 chr11 135006516 + 107343927 107344470 MLT2A2 560 - 0 560 63942 145 0 15 93 3 5 302 chain 10122 chr11 135006516 + 107345535 107345859 MER41A 554 - 74 402 71457 23 0 4 301 chain 58294 chr11 135006516 + 107345863 107346615 MER4E 760 + 0 760 53809 24 3 0 127 24 27 184 2 0 7 0 3 74 1 0 181 0 5 90 4 7 31 chain 4749 chr11 135006516 + 107346615 107346767 MER41A 554 - 402 554 71457 152 chain 31886 chr11 135006516 + 107351970 107352318 L1PA3long 6157 + 5809 6157 81036 348 chain 24992 chr11 135006516 + 107356200 107356498 AluYf5 307 + 0 293 104848 132 3 0 128 6 4 29 chain 53428 chr11 135006516 + 107368148 107368807 LTR12_ 688 + 0 688 56741 121 0 25 21 2 1 110 5 10 400 chain 56780 chr11 135006516 + 107383557 107384487 L1PA15 4387 + 3444 4366 54665 77 0 11 5 3 0 276 2 0 20 5 1 47 0 3 6 2 0 23 0 1 18 1 0 78 5 6 54 1 7 27 2 1 26 1 0 53 2 1 22 4 0 8 25 24 17 29 27 11 0 4 18 3 1 12 5 0 14 5 1 12 1 0 10 chain 41368 chr11 135006516 + 107389132 107389670 MER9a2 513 + 0 513 67447 252 11 12 41 32 0 76 0 4 59 0 2 67 chain 4330 chr11 135006516 + 107399083 107399129 L1PA4 6152 - 8 54 202832 46 chain 4036 chr11 135006516 + 107399966 107400014 MIR 256 + 176 224 206828 48 chain 50686 chr11 135006516 + 107405505 107406338 L1PB1 5432 - 10 811 58513 18 1 0 11 1 0 23 1 0 5 1 0 19 2 0 14 1 0 5 3 1 18 13 6 6 2 0 15 1 0 45 1 0 15 2 1 52 2 0 9 6 2 13 3 2 4 1 0 23 5 0 8 1 4 61 1 0 21 5 7 176 16 15 11 1 0 191 chain 34776 chr11 135006516 + 107436760 107437249 MER4A1 472 + 0 472 76511 72 0 1 33 14 1 88 16 11 221 0 1 4 1 0 40 chain 3761 chr11 135006516 + 107454265 107454312 MIR 256 + 182 231 210943 7 0 2 40 chain 4646 chr11 135006516 + 107464365 107464423 MER53 195 + 8 66 199103 58 chain 16938 chr11 135006516 + 107503623 107503916 Tigger4b 360 + 0 360 135756 40 69 120 131 0 16 53 chain 24901 chr11 135006516 + 107512665 107512959 AluSg7 307 - 3 299 105341 24 0 1 152 0 1 118 chain 6909 chr11 135006516 + 107545063 107545146 MER4A1 472 - 387 472 178128 69 0 2 14 chain 10022 chr11 135006516 + 107555498 107555703 L1PA16 3655 + 3427 3619 160473 104 13 22 25 3 0 8 36 17 16 chain 20672 chr11 135006516 + 107594055 107594510 Tigger2a 444 - 0 389 125069 19 150 95 29 14 1 77 5 7 161 chain 12300 chr11 135006516 + 107604253 107604402 L1PA16 3655 - 81 230 151012 149 chain 86750 chr11 135006516 + 107607772 107608789 L1PA5 6144 - 13 1009 40864 326 1 0 345 17 0 166 3 0 159 chain 19401 chr11 135006516 + 107615900 107616205 L1MA2 4263 + 3754 4052 128945 38 17 14 12 6 5 135 9 7 82 1 0 5 chain 397418 chr11 135006516 + 107629994 107636754 L1PB1 5432 + 19 5410 10183 146 7 11 62 8 14 152 1 0 141 0 12 9 12 0 14 7 11 31 1 0 4 3 4 131 0 2 170 1044 0 123 0 1 74 0 1 115 0 4 13 16 13 5 1 0 15 0 1 97 1 0 6 33 0 123 12 17 167 0 2 6 311 0 139 1 4 53 0 2 289 0 1 101 2 0 94 0 1 57 0 3 28 4 0 98 0 3 253 4 1 296 7 6 177 1 0 404 4 7 375 1 0 442 2 0 55 0 4 18 3 0 177 4 11 41 2 0 245 0 14 23 1 0 9 1 0 10 4 0 10 2 0 50 44 42 22 1 0 20 19 7 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 6 chain 65793 chr11 135006516 + 107630915 107631937 LTR12D 1347 - 14 943 50199 42 8 12 176 0 1 4 1 0 16 1 0 33 1 0 26 5 1 303 10 28 32 65 0 91 77 33 131 chain 8758 chr11 135006516 + 107657491 107657602 MER21-int 1364 + 1137 1250 166877 94 0 2 17 chain 11614 chr11 135006516 + 107666895 107667106 L1MA4A 3247 + 2981 3179 153835 18 12 7 20 0 1 80 1 0 9 4 2 15 21 15 31 chain 52566 chr11 135006516 + 107704403 107705041 LTR6A 649 - 6 649 57258 56 1 0 146 0 1 36 1 0 18 0 1 96 4 6 184 0 2 56 0 1 40 chain 4811 chr11 135006516 + 107718695 107718754 L1MB3 1562 + 1354 1413 197219 59 chain 23841 chr11 135006516 + 107726107 107726389 AluSp 311 + 11 293 111238 282 chain 5242 chr11 135006516 + 107733528 107733590 MLT1D 503 + 399 461 192598 62 chain 25280 chr11 135006516 + 107749710 107750093 LTR7B 505 + 0 505 103318 108 0 10 18 4 6 29 18 86 28 42 84 136 chain 8806 chr11 135006516 + 107750596 107750703 LTR9B 643 - 89 198 166616 73 0 2 34 chain 30179 chr11 135006516 + 107752288 107752660 MER41A 554 - 183 554 84248 79 5 0 184 0 3 33 0 1 71 chain 5211 chr11 135006516 + 107763127 107763190 L1MB1 2102 - 95 158 192906 63 chain 151262 chr11 135006516 + 107782504 107784211 SVA_D 2077 + 8 2072 24439 636 0 1 116 3 0 147 2 0 13 0 135 34 1 2 125 1 227 615 1 0 13 chain 6894 chr11 135006516 + 107793178 107793259 MLT1C 463 + 0 81 178230 81 chain 25860 chr11 135006516 + 107805370 107805677 AluSq10 312 + 0 305 100606 97 1 0 14 2 1 193 chain 35579 chr11 135006516 + 107805830 107806619 MER41C 542 - 0 480 75437 214 0 19 15 2 0 16 325 0 197 1 0 19 chain 5185 chr11 135006516 + 107838939 107838997 LTR12F 595 - 123 181 193197 58 chain 33536 chr11 135006516 + 107848563 107849019 MLT2A1 477 + 0 477 78338 140 0 1 24 5 9 209 8 0 12 13 37 45 chain 465363 chr11 135006516 + 107849019 107856986 HERVL-int 5654 + 0 5654 8206 60 0 1 5 3 0 169 0 16 30 0 1 665 3 4 1039 1 2 176 0 1 328 1 6 128 0 1 143 2074 0 296 0 6 215 0 14 227 0 13 382 2 1 94 1 0 991 15 6 25 0 1 172 2 0 8 0 1 126 291 0 79 1 2 17 0 2 125 0 3 73 chain 28454 chr11 135006516 + 107851810 107852136 LTR17 781 - 455 781 91359 326 chain 110480 chr11 135006516 + 107852450 107853843 HERV17-int 4347 - 0 1352 34080 186 3 6 19 2 21 396 62 0 571 2 1 152 chain 23608 chr11 135006516 + 107875967 107876255 AluSp 311 - 13 300 112531 35 1 0 252 chain 3309 chr11 135006516 + 107880969 107881008 MADE1 96 + 57 96 218789 39 chain 4978 chr11 135006516 + 107889602 107889664 MIR 256 + 59 121 195380 62 chain 31215 chr11 135006516 + 107933959 107935732 L1MA3 4352 - 293 2768 82133 160 1 0 33 0 3 54 8 11 13 1236 1932 75 3 4 84 4 5 27 10 9 65 chain 6829 chr11 135006516 + 107934228 107934301 L1PA4 6152 + 6078 6151 178008 73 chain 14213 chr11 135006516 + 107954608 107954827 MER30 238 + 0 238 143836 16 2 8 45 7 5 32 5 0 8 1 21 103 chain 8505 chr11 135006516 + 107955639 107955740 HY3 101 + 0 101 168263 101 chain 3757 chr11 135006516 + 107963195 107963253 L1MB7 1623 + 1438 1493 210999 12 3 0 43 chain 12032 chr11 135006516 + 107974551 107974698 L1PA7 6471 - 15 161 152064 121 1 0 25 chain 5273 chr11 135006516 + 107985676 107985901 MLT1A0 366 + 65 305 192293 17 131 144 15 5 7 57 chain 2974 chr11 135006516 + 107991364 107991395 MLT1G 592 - 119 150 225548 31 chain 15231 chr11 135006516 + 107999634 107999985 L1PB1 5432 - 10 325 140688 4 0 1 18 9 7 18 9 8 20 2 0 14 10 6 18 17 6 6 2 0 15 1 0 45 1 0 15 3 2 8 1 0 43 2 0 9 9 5 10 1 0 8 1 0 22 3 0 7 chain 13133 chr11 135006516 + 108000007 108000480 L1P5 443 - 22 192 147711 83 303 0 87 chain 107820 chr11 135006516 + 108070996 108072586 MER52-int 3354 + 1699 3289 34775 231 4 0 232 4 3 4 0 1 254 1 0 14 0 24 69 1 3 217 0 9 19 2 1 52 1 0 7 1 0 40 3 1 15 1 0 36 2 0 11 1 0 42 2 0 33 1 0 31 2 0 9 2 0 6 19 16 29 2 1 10 2 0 33 35 30 6 2 0 28 4 7 7 1 0 15 1 0 32 1 0 6 1 0 6 chain 10542 chr11 135006516 + 108078746 108078938 Tigger4a 237 - 0 199 158080 12 2 0 40 8 9 60 2 9 40 16 17 12 chain 8446 chr11 135006516 + 108100233 108100331 HY3 101 - 3 101 168587 98 chain 3274 chr11 135006516 + 108113182 108113255 L1MD 993 + 61 134 219467 27 24 24 22 chain 56582 chr11 135006516 + 108127255 108127929 L1PA7 6471 - 10 684 54799 29 10 9 25 0 1 610 chain 548339 chr11 135006516 + 108131353 108137370 L1PA2 6032 + 0 6027 1656 256 1 0 25 0 3 283 0 4 135 0 1 1717 1 0 587 0 5 2701 1 0 310 chain 338808 chr11 135006516 + 108144429 108148562 L1P3 4156 - 17 4152 11927 24 2 1 7 2 0 26 0 3 77 1 3 253 0 2 168 0 8 20 1 5 48 1 0 11 11 1 18 4 5 362 0 4 100 3 0 176 0 2 135 5 9 40 0 3 148 1 0 391 1 0 195 0 4 19 0 1 781 1 0 769 2 1 57 40 24 171 0 1 62 chain 17304 chr11 135006516 + 108199392 108199613 MER30 238 - 0 238 134778 109 4 21 108 chain 13815 chr11 135006516 + 108212712 108212933 MER30 238 + 4 238 145195 14 24 22 48 0 2 18 4 14 68 0 3 45 chain 552775 chr11 135006516 + 108227658 108233694 L1PA2 6032 + 0 6032 1100 213 0 1 42 1 0 2882 0 1 2873 1 0 7 2 0 8 2 0 5 chain 550832 chr11 135006516 + 108244263 108250363 L1PA3long 6157 + 0 6157 1340 546 0 39 160 0 1 211 0 1 834 1 3 905 0 5 184 6 8 365 0 1 4 1 0 1403 0 1 639 0 4 135 0 1 445 0 1 261 chain 39617 chr11 135006516 + 108272024 108272506 LTR15 485 + 0 477 69867 17 11 6 214 0 1 192 1 0 47 chain 19223 chr11 135006516 + 108288406 108288653 L1PA7 6471 + 6225 6466 129461 19 0 1 17 4 0 194 3 0 10 chain 409154 chr11 135006516 + 108293819 108299546 L1PA7 6471 + 305 6469 9827 95 0 4 257 0 174 378 0 4 271 0 3 41 0 1 347 0 896 258 0 1 26 0 1 32 4 8 78 7 8 290 1 0 6 12 12 53 0 4 21 0 5 196 0 1 1209 7 6 171 5 15 9 47 0 91 2 0 214 0 1 133 0 3 86 689 64 105 1 0 411 21 20 142 0 2 11 chain 27406 chr11 135006516 + 108298166 108298472 AluYg6 310 + 0 304 94949 12 0 2 104 4 0 186 chain 27791 chr11 135006516 + 108298552 108298851 AluYa5 310 - 6 306 93732 198 0 1 101 chain 19489 chr11 135006516 + 108300276 108300804 L1MB3 1562 + 996 1498 128686 139 9 11 52 22 21 41 1 0 13 194 169 26 6 5 25 chain 298170 chr11 135006516 + 108311585 108315345 L1P2 5180 + 2 3794 13523 148 2 1 96 3 2 240 12 11 7 1 0 8 1 0 272 9 7 97 9 13 29 0 25 500 1 2 579 0 7 274 7 0 45 0 1 326 47 53 703 0 3 71 1 0 272 chain 534957 chr11 135006516 + 108315346 108321511 L1PA4 6152 + 2 6151 3598 196 1 0 4 1 2 75 1 0 297 1 0 258 17 0 410 1 0 151 32 23 1273 2 1 564 0 1 827 0 1 580 1 0 640 0 4 354 0 9 479 chain 207067 chr11 135006516 + 108321518 108323884 L1PA5 6144 + 3766 6144 18712 6 1 0 355 0 1 259 0 2 581 0 1 323 1 0 35 1 8 751 0 1 17 0 2 36 chain 8100 chr11 135006516 + 108342384 108342657 AluJr4 308 - 23 301 170485 62 146 5 16 1 140 31 0 7 17 chain 36472 chr11 135006516 + 108357507 108358106 MER4B 649 + 0 577 74272 27 14 13 56 0 1 5 21 21 67 9 16 40 8 12 63 1 0 44 5 0 55 3 0 5 23 0 139 2 1 12 chain 3901 chr11 135006516 + 108358245 108358297 MER4E1 777 + 716 770 208834 36 0 2 16 chain 21354 chr11 135006516 + 108364253 108364509 AluSg 306 + 3 259 122669 256 chain 40329 chr11 135006516 + 108389375 108389904 MER41A 554 + 0 534 68837 213 14 12 47 0 1 82 4 1 52 0 4 57 0 5 60 chain 3898 chr11 135006516 + 108404438 108404480 MER20 218 - 71 113 208882 42 chain 19908 chr11 135006516 + 108426293 108426664 THE1C 375 + 0 368 127452 30 1 0 17 10 7 14 30 30 15 5 6 57 14 15 56 9 8 88 0 1 4 1 0 20 chain 22509 chr11 135006516 + 108442513 108442789 AluYc3 301 + 8 284 117995 105 1 2 66 5 4 99 chain 4909 chr11 135006516 + 108496858 108496918 MER20 218 + 118 178 196167 60 chain 25204 chr11 135006516 + 108497101 108497393 AluYa5 310 - 17 310 103720 262 1 2 29 chain 4338 chr11 135006516 + 108498383 108498442 HAL1 992 + 155 212 202733 20 2 0 37 chain 24320 chr11 135006516 + 108504245 108504536 AluY 311 + 8 297 108544 125 2 0 164 chain 23490 chr11 135006516 + 108512479 108512774 MER4D1 891 + 0 295 113175 27 1 0 262 0 1 5 chain 29424 chr11 135006516 + 108524977 108525329 MER57A1 433 - 81 433 86969 352 chain 3413 chr11 135006516 + 108536941 108536980 MLT1D 503 - 22 61 216882 39 chain 24929 chr11 135006516 + 108542523 108542813 AluY 311 + 19 306 105166 108 1 0 155 2 0 24 chain 5031 chr11 135006516 + 108545890 108545947 L1MA8 2339 - 442 499 194813 57 chain 118044 chr11 135006516 + 108554919 108556283 L1HS 6032 - 2 6030 31786 20 1 0 82 10 2 864 0 4673 387 chain 23072 chr11 135006516 + 108563630 108563924 L1PA7 6471 - 6 312 115286 196 3 13 50 5 7 40 chain 2747 chr11 135006516 + 108592760 108592871 MIR 256 - 84 196 229521 25 67 68 19 chain 32244 chr11 135006516 + 108611045 108611585 L1PA15 4387 - 56 589 80453 16 3 1 44 6 3 48 5 4 10 4 0 75 1 0 26 1 0 69 25 22 9 0 1 10 2 5 11 0 1 44 1 0 51 0 2 61 3 5 15 chain 13712 chr11 135006516 + 108643366 108643556 MER1B 344 + 32 218 145566 50 5 0 117 3 4 15 chain 176154 chr11 135006516 + 108648380 108650406 L1PA5 6144 + 4091 6144 21338 505 0 1 678 0 4 13 2 6 572 9 10 103 0 1 12 0 1 40 0 15 92 chain 3563 chr11 135006516 + 108662562 108662605 L1ME1 1623 - 345 388 214264 43 chain 8524 chr11 135006516 + 108664786 108664972 L1MA4A 3247 - 43 215 168168 25 3 0 31 58 47 69 chain 49517 chr11 135006516 + 108666036 108666676 L1PA5 6144 - 1 605 59378 50 42 7 399 6 5 143 chain 132737 chr11 135006516 + 108699694 108701565 L1PB1 5432 - 329 2244 27472 4 0 1 159 15 7 120 0 1 161 0 4 15 0 2 50 1 2 66 0 3 28 1 0 51 0 4 28 0 1 50 5 7 139 8 28 297 3 4 42 0 4 23 3 0 26 0 3 41 3 4 72 10 22 245 3 1 18 22 23 32 8 5 122 chain 20950 chr11 135006516 + 108705445 108705679 AluY 311 + 73 307 124103 234 chain 18652 chr11 135006516 + 108731712 108731958 MLT2A1 477 + 12 263 131081 102 1 0 5 0 1 20 10 11 18 0 4 90 chain 41279 chr11 135006516 + 108783801 108784396 MER4A1_ 611 - 15 609 67563 50 7 6 225 53 36 154 0 9 63 0 2 23 7 13 13 chain 2847 chr11 135006516 + 108804035 108804065 MER31B 477 - 347 377 227913 30 chain 78989 chr11 135006516 + 108816799 108817954 HSMAR1 1287 - 46 1285 44066 191 7 8 105 22 28 81 4 0 84 0 1 162 0 14 10 51 91 23 1 7 271 1 6 34 6 9 44 0 12 58 chain 195654 chr11 135006516 + 108819642 108821996 L1PA7 6471 - 10 2373 19530 311 0 1 12 0 1 434 2 1 77 0 3 107 0 6 52 2 0 259 0 4 120 1 0 3 4 0 84 0 1 307 0 4 21 13 0 126 0 4 35 0 1 247 0 1 92 1 5 44 chain 7176 chr11 135006516 + 108823313 108823784 L1MC3 1789 + 1177 1575 176231 50 134 107 29 0 4 10 1 0 9 210 161 28 chain 75862 chr11 135006516 + 108825593 108826586 L1PA8 5853 + 4869 5853 45566 140 8 0 73 0 2 20 0 1 368 0 1 4 1 0 42 3 4 40 1 0 44 2 0 35 0 2 28 22 20 46 3 2 19 1 0 93 chain 38309 chr11 135006516 + 108850558 108851058 L1PA8 5853 - 0 503 71697 93 1 0 19 2 1 51 5 4 6 1 0 71 2 0 44 1 0 36 9 6 58 0 13 101 chain 21097 chr11 135006516 + 108852412 108852771 THE1B 368 + 0 368 123559 81 0 1 26 8 9 60 59 66 63 1 0 4 1 2 56 chain 30806 chr11 135006516 + 108860092 108860462 L1PA8A 6298 - 18 388 82853 370 chain 41153 chr11 135006516 + 108876363 108876892 L1PA11 4918 + 3826 4357 67711 358 3 6 141 1 0 26 chain 23147 chr11 135006516 + 108878911 108879184 AluY 311 + 38 306 114903 92 5 0 176 chain 112196 chr11 135006516 + 108894165 108895812 L1MA3 4352 - 39 1656 33614 25 8 6 6 1 0 18 2 0 20 0 1 32 0 2 7 9 6 11 10 9 57 3 0 7 71 49 377 1 0 64 3 4 200 28 25 11 1 0 175 0 5 500 chain 42077 chr11 135006516 + 108901048 108901530 L1PA5 6144 - 1 488 66523 10 0 6 132 1 0 339 chain 98023 chr11 135006516 + 108915700 108916767 L1PA4 6152 - 5 1072 37272 1067 chain 6217 chr11 135006516 + 108918531 108918696 L1PB1 5432 + 5258 5413 183430 23 1 0 4 5 12 14 8 0 14 30 25 20 1 0 21 1 0 9 0 1 5 2 0 7 chain 29845 chr11 135006516 + 108921578 108921954 L1PA7 6471 + 6082 6457 85299 239 2 1 135 chain 552551 chr11 135006516 + 108948809 108954942 L1PA3long 6157 - 0 6151 1125 1054 0 2 743 0 4 487 0 1 970 5 7 184 0 5 306 0 4 281 1 0 392 0 1 1710 chain 103968 chr11 135006516 + 108955135 108956344 L1PA6 6164 - 8 1224 35739 9 0 6 309 1 0 304 1 0 134 0 1 282 0 2 169 chain 11878 chr11 135006516 + 108971613 108971935 L1PB1 5432 - 10 318 152705 18 1 0 13 1 0 21 1 0 16 18 28 18 63 52 19 6 5 11 2 1 52 3 1 8 6 2 13 1 0 6 1 0 24 chain 14592 chr11 135006516 + 108987359 108987560 MER30 238 - 0 210 142622 105 19 28 77 chain 28903 chr11 135006516 + 108989369 108989673 AluYa5 310 - 6 310 89449 304 chain 19995 chr11 135006516 + 109006493 109006776 L1MA2 4263 - 158 434 127158 27 0 2 18 7 0 93 3 1 6 1 0 54 0 1 74 chain 31958 chr11 135006516 + 109006782 109007456 MLT2A1 477 + 3 477 80926 166 1 5 202 2 0 9 20 0 8 216 35 6 5 0 31 0 4 8 chain 29196 chr11 135006516 + 109010418 109011276 L1M1 2793 - 98 706 88064 10 1 0 12 1 0 45 1 0 187 4 0 14 13 15 77 377 133 67 23 29 6 7 0 13 chain 55620 chr11 135006516 + 109016171 109016793 SVA_B 1603 + 978 1597 55352 24 2 0 7 1 0 588 chain 42598 chr11 135006516 + 109022499 109023214 L1PB1 5432 - 12 692 65902 16 1 0 13 1 0 17 9 8 17 7 5 12 1 0 4 3 1 18 19 8 6 1 0 14 1 0 40 13 12 10 1 0 52 2 0 6 19 14 13 1 0 20 3 0 11 1 0 51 1 0 5 0 1 306 chain 27732 chr11 135006516 + 109029433 109029785 THE1A 353 - 0 353 93927 44 9 10 113 0 1 77 1 0 108 chain 124466 chr11 135006516 + 109029785 109031362 THE1A-int 1579 - 0 1579 29552 228 11 5 146 0 9 258 0 1 217 19 15 14 4 4 404 0 1 132 0 1 144 chain 27650 chr11 135006516 + 109031362 109031709 THE1A 353 - 0 346 94208 243 1 0 103 chain 566329 chr11 135006516 + 109048221 109054253 L1HS 6032 - 0 6032 130 6032 chain 497434 chr11 135006516 + 109057027 109064189 L1PA6 6164 - 10 6146 6985 198 0 6 251 0 2 397 0 4 222 1 0 162 1112 0 21 0 1 4 1 0 98 0 4 602 1 2 210 0 2 73 7 8 109 0 1 251 1 2 192 5 6 70 4 16 17 0 1 31 9 1 104 0 3 175 5 7 146 0 8 272 0 2 147 0 1 272 0 1 202 3 0 7 0 7 170 0 1 217 0 2 192 0 1 449 0 17 25 8 9 160 7 8 74 3 2 40 0 11 50 1 0 171 6 10 87 0 2 120 chain 90699 chr11 135006516 + 109058302 109059370 MER11C 1089 - 16 1089 39388 236 0 1 76 0 1 492 0 3 264 chain 19924 chr11 135006516 + 109065374 109065627 L1PA7 6471 - 14 260 127386 141 9 2 103 chain 59247 chr11 135006516 + 109076473 109077170 L1PA7 6471 - 1 698 53254 154 2 0 5 1 3 535 chain 400433 chr11 135006516 + 109086434 109092045 L1PA8 5853 - 0 5596 10083 93 1 0 19 2 1 45 8 7 9 1 0 69 2 0 38 15 14 27 0 3 78 0 1 348 3 2 5 1 0 85 2 0 5 1 0 1011 0 2 225 14 13 359 1 0 142 8 10 143 9 7 76 0 1 77 0 4 14 6 7 42 6 5 158 1 2 233 10 11 362 0 12 60 4 2 65 0 1 246 0 1 4 1 0 85 0 3 67 0 1 26 1 2 110 2 1 180 17 21 6 4 0 98 42 35 309 9 9 74 4 9 10 6 9 37 0 4 6 5 6 39 61 41 149 96 80 14 0 1 20 chain 8676 chr11 135006516 + 109105186 109105283 L1PA5 6144 - 4 101 167324 97 chain 80119 chr11 135006516 + 109115151 109116280 L1PA11 4918 + 3375 4504 43538 6 2 0 259 7 5 188 0 1 215 1 0 6 0 1 4 0 1 112 7 12 23 0 4 115 1 0 7 8 4 31 0 2 14 10 9 78 3 1 16 1 0 15 chain 11353 chr11 135006516 + 109128887 109129027 MSTB 430 - 6 146 154885 140 chain 2830 chr11 135006516 + 109134292 109134714 L1M3c 1411 - 442 851 228210 24 365 352 33 chain 63993 chr11 135006516 + 109158158 109159035 HERVL-int 5654 + 4760 5654 51009 68 12 4 54 7 9 114 2 1 104 0 5 99 1 0 94 0 8 84 0 1 13 0 8 7 1 0 150 6 10 61 chain 63810 chr11 135006516 + 109184326 109185050 L1PA5 6144 - 4 728 51092 724 chain 53198 chr11 135006516 + 109185050 109185685 L1P1 4361 + 3709 4341 56895 442 1 0 154 1 0 23 2 1 12 chain 29360 chr11 135006516 + 109186581 109186892 AluYb8 318 - 7 318 87240 311 chain 45141 chr11 135006516 + 109201255 109201835 L1PA7 6471 + 5884 6464 62876 24 0 1 215 8 7 176 19 19 138 chain 29651 chr11 135006516 + 109212433 109212827 L1PA8 5853 - 0 388 86060 94 2 1 17 2 1 52 1 0 9 3 2 68 2 0 45 1 0 48 0 1 50 chain 6647 chr11 135006516 + 109213118 109213282 MLT1H 522 - 225 398 180117 58 73 82 33 chain 3442 chr11 135006516 + 109225152 109225195 MER63A 208 + 85 128 216342 43 chain 20518 chr11 135006516 + 109252227 109252584 THE1D 372 - 0 370 125576 32 1 0 116 17 18 12 43 49 14 1 9 103 1 0 17 chain 31634 chr11 135006516 + 109252592 109252991 THE1D-int 1627 - 7 405 81427 42 2 1 20 1 0 5 0 1 329 chain 24889 chr11 135006516 + 109265002 109265355 THE1A 353 + 2 353 105415 11 2 0 34 0 1 48 1 0 15 0 2 6 20 18 216 chain 310230 chr11 135006516 + 109272644 109276042 L1PA2 6032 + 2629 6031 12994 489 0 1 1911 0 1 769 0 2 229 chain 81415 chr11 135006516 + 109315422 109316386 L1PA6 6164 + 5189 6162 43007 140 0 1 680 0 1 39 6 11 90 0 2 9 chain 380450 chr11 135006516 + 109317241 109321501 L1PA4 6152 + 1894 6152 10741 1141 0 1 168 1 2 2877 4 0 69 chain 154719 chr11 135006516 + 109331529 109333424 L1PA7 6471 + 4579 6461 24014 406 8 1 210 1 0 208 0 7 12 14 0 198 1 0 4 0 3 833 chain 32041 chr11 135006516 + 109337296 109337770 MER4E1 777 - 313 773 80798 12 7 1 207 1 2 14 0 1 19 0 1 6 6 1 133 8 9 41 7 0 13 chain 310463 chr11 135006516 + 109337785 109341868 L1PA7 6471 + 2568 6469 12986 65 3 0 309 0 1 161 3 1 110 9 5 13 0 4 6 4 0 31 5 6 120 222 0 97 1 0 52 0 4 93 2 0 359 1 0 110 1 0 97 29 64 211 1 2 85 1 0 4 0 1 73 0 1 944 5 6 20 3 0 25 0 1 18 0 1 13 17 19 44 0 12 375 0 1 71 0 1 257 5 0 8 chain 43299 chr11 135006516 + 109362571 109363049 L1PA2 6032 - 5 485 65051 9 0 1 306 0 1 163 chain 43822 chr11 135006516 + 109365147 109365632 L1PA2 6032 - 0 492 64424 156 0 7 329 chain 32076 chr11 135006516 + 109366616 109367048 MLT2A1 477 - 54 477 80728 4 1 0 8 3 0 13 1 0 15 2 0 179 0 1 33 5 2 168 chain 458755 chr11 135006516 + 109367048 109372670 HERVL-int 5654 - 0 5654 8452 74 0 3 168 0 1 120 2 0 58 13 5 323 1 0 342 0 1 184 4 8 50 9 13 281 1 0 105 0 4 645 0 3 62 1 10 337 1 0 465 0 1 1159 2 0 281 15 14 421 4 16 158 0 3 196 0 2 67 0 1 73 chain 29514 chr11 135006516 + 109372670 109373736 MLT2A1 477 - 0 477 86594 50 641 52 74 15 16 81 0 1 23 0 1 8 5 2 169 chain 15985 chr11 135006516 + 109381810 109382113 THE1C 375 + 1 336 138393 39 69 104 35 0 2 5 17 12 138 chain 53949 chr11 135006516 + 109395042 109395669 L1PA3long 6157 + 5513 6140 56405 627 chain 31281 chr11 135006516 + 109395872 109396243 L1PA6 6164 + 5782 6150 82021 60 3 0 308 chain 49908 chr11 135006516 + 109398760 109399602 L1PB1 5432 + 4610 5404 59084 18 0 1 8 0 1 171 0 4 39 0 1 161 0 2 63 53 35 21 1 0 11 1 0 4 8 9 9 2 0 52 2 1 15 1 0 43 2 1 16 2 0 6 15 6 16 42 22 24 1 0 21 1 0 13 chain 20517 chr11 135006516 + 109399697 109399917 L1PA4 6152 + 5081 5301 125579 220 chain 73691 chr11 135006516 + 109399928 109400770 L1PA4 6152 + 5314 6152 46683 832 4 0 6 chain 59226 chr11 135006516 + 109401014 109401894 L1PA8 5853 - 0 892 53269 93 1 0 18 3 2 49 4 3 9 15 11 58 7 5 43 1 0 46 8 9 102 0 4 254 4 9 32 0 3 19 11 14 52 6 12 45 chain 26756 chr11 135006516 + 109405711 109406082 THE1D 372 - 0 372 97143 32 1 0 116 23 22 9 0 3 190 chain 19319 chr11 135006516 + 109406722 109406944 L1PA5 6144 + 5922 6144 129180 222 chain 10282 chr11 135006516 + 109408215 109408340 L1M1 2793 - 1013 1139 159222 115 0 1 10 chain 317992 chr11 135006516 + 109411415 109415027 L1PA5 6144 + 2504 6127 12674 712 0 4 449 0 3 275 1 3 1337 1 0 113 0 3 724 chain 3399 chr11 135006516 + 109415754 109415795 LTR8 732 + 651 692 217079 41 chain 3802 chr11 135006516 + 109427447 109427487 L1PA5 6144 + 5834 5874 210366 40 chain 22221 chr11 135006516 + 109427487 109427746 L1PA5 6144 + 5876 6135 119256 259 chain 22087 chr11 135006516 + 109440836 109442093 L1PB1 5432 + 3374 4625 26637 348 21 16 245 0 1 8 1 0 318 1 0 163 0 5 7 14 9 131 chain 516245 chr11 135006516 + 109442107 109447785 L1PA2 6032 + 0 6029 5553 317 0 1 134 0 341 2070 5 6 2311 0 8 841 chain 14338 chr11 135006516 + 109447818 109448634 L1PB1 5432 + 4625 5413 26637 55 9 12 16 1 0 395 1 2 9 3 0 11 0 3 10 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 22 11 11 13 10 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 15862 chr11 135006516 + 109461056 109461250 L1PA8A 6298 - 8 201 138771 104 1 0 89 chain 20287 chr11 135006516 + 109469154 109469396 L1PA2 6032 + 5771 6014 126262 106 5 6 131 chain 4215 chr11 135006516 + 109478349 109478398 L1PA5 6144 + 5953 6002 204350 49 chain 11953 chr11 135006516 + 109478399 109478529 L1PA5 6144 + 6002 6132 152393 130 chain 61610 chr11 135006516 + 109492120 109492806 L1PA4 6152 - 0 696 52074 12 0 9 92 0 1 582 chain 60523 chr11 135006516 + 109492807 109493501 L1PA4 6152 + 4745 5447 52569 533 0 4 18 0 1 48 0 3 95 chain 26120 chr11 135006516 + 109496592 109496945 L1PA8 5853 + 5508 5853 99529 54 1 0 46 2 0 74 1 0 11 10 8 42 1 0 17 1 0 93 chain 3935 chr11 135006516 + 109552811 109552854 L1PA15 4387 + 3257 3300 208342 43 chain 70841 chr11 135006516 + 109582537 109583355 L1PA6 6164 + 5338 6156 47994 551 0 1 247 1 0 19 chain 26110 chr11 135006516 + 109584413 109584774 THE1B 368 - 0 368 99579 75 1 0 101 6 0 20 1 0 105 8 23 44 chain 117107 chr11 135006516 + 109584787 109586314 THE1B-int 1605 - 13 1560 32086 252 7 6 68 6 5 163 4 0 170 19 20 452 1 26 385 chain 15393 chr11 135006516 + 109591591 109591762 L1PA2 6032 + 5745 5916 140220 171 chain 20217 chr11 135006516 + 109602443 109602683 L1PA4 6152 + 5909 6152 126478 226 1 4 13 chain 25841 chr11 135006516 + 109602687 109603042 LOR1b 457 - 88 455 100693 24 2 3 166 9 10 127 0 10 27 chain 15533 chr11 135006516 + 109606685 109606902 L1PA8 5853 + 5640 5853 139788 38 12 10 51 3 2 19 1 0 93 chain 93960 chr11 135006516 + 109629655 109630826 L1PA7 6471 + 5282 6461 38363 110 0 2 227 0 3 47 0 3 21 9 8 604 13 14 140 chain 17585 chr11 135006516 + 109631705 109631934 L1PA16 3655 - 1007 1251 134039 27 5 15 39 0 5 158 chain 20333 chr11 135006516 + 109631938 109632178 L1PA7 6471 + 6070 6310 126125 240 chain 7650 chr11 135006516 + 109638316 109638415 L1P 111 + 8 106 173226 94 1 0 4 chain 13416 chr11 135006516 + 109641692 109641972 L1PB1 5432 + 5167 5428 146647 53 2 1 8 1 0 7 1 0 44 1 0 16 4 0 6 7 6 19 24 19 24 1 0 21 1 0 8 6 5 18 2 0 6 chain 5322 chr11 135006516 + 109642417 109642664 L1MA6 2487 - 103 291 191800 5 3 0 36 85 48 4 1 0 15 9 7 20 38 22 31 chain 12292 chr11 135006516 + 109661673 109664431 L1MB3 1562 + 1091 1347 151039 110 1 0 20 2546 33 23 0 12 58 chain 17016 chr11 135006516 + 109671100 109671487 L1PB1 5432 - 17 371 135550 10 4 3 11 1 0 21 1 0 26 2 0 11 2 1 5 2 0 19 16 6 6 5 0 16 1 0 8 0 2 30 21 20 52 2 0 8 20 15 7 1 0 24 3 0 9 1 2 42 chain 21820 chr11 135006516 + 109676506 109676833 THE1A 353 - 0 353 120944 106 0 3 5 6 27 102 2 1 24 19 22 63 chain 333407 chr11 135006516 + 109749094 109752729 L1PA2 6032 - 0 3632 12070 174 0 2 177 0 1 932 6 0 2346 chain 116325 chr11 135006516 + 109772029 109773576 THE1A-int 1579 - 6 1579 32334 11 1 0 219 1 11 269 1 0 4 0 1 48 4 0 21 0 1 221 12 28 66 37 40 86 0 3 335 0 1 54 6 3 151 chain 128213 chr11 135006516 + 109817892 109819293 L1PA3long 6157 - 2 1407 28521 342 0 3 653 0 1 406 chain 32986 chr11 135006516 + 109822968 109823418 MER4A 717 + 0 448 79239 127 0 1 193 28 25 102 chain 43528 chr11 135006516 + 109832263 109832812 MLT2A2 560 + 0 560 64776 406 0 11 143 chain 438991 chr11 135006516 + 109832812 109838400 HERVL-int 5654 + 0 5654 9081 608 4 13 1074 0 2 407 6 9 229 6 0 547 21 10 214 9 18 883 0 16 242 1 6 762 0 38 27 7 11 108 3 0 5 3 6 43 0 3 78 0 1 69 4 0 151 2 0 3 1 0 71 chain 21868 chr11 135006516 + 109875046 109875476 L1PA15 4387 - 35 455 120760 23 21 15 21 42 40 33 8 7 8 4 0 8 0 1 11 1 0 38 21 25 18 1 0 172 chain 8816 chr11 135006516 + 109916207 109916486 L1MC1 2226 + 1783 2047 166574 55 153 140 16 2 0 53 chain 83260 chr11 135006516 + 109924277 109925352 MER11B 1079 - 0 1079 42226 13 1 2 13 1 0 89 11 11 74 0 1 80 8 9 13 6 8 223 2 1 4 0 1 537 chain 41190 chr11 135006516 + 109926973 109927546 MER4B 649 - 76 649 67657 69 0 1 134 0 4 169 12 10 77 11 9 47 5 4 49 chain 9481 chr11 135006516 + 109945324 109945460 MSTA 426 - 2 146 163154 107 10 18 19 chain 4755 chr11 135006516 + 110009135 110009281 MER33 330 - 52 200 197851 15 8 9 30 48 51 15 2 0 28 chain 12605 chr11 135006516 + 110018121 110018342 L1PA8 5853 + 5637 5853 149820 45 1 0 11 9 8 36 5 4 11 9 8 62 6 5 26 chain 12057 chr11 135006516 + 110059098 110059355 L1PB1 5432 + 5170 5404 151957 50 2 1 15 1 0 45 1 0 11 28 16 18 3 1 5 2 0 14 2 0 11 14 13 22 1 0 12 chain 106248 chr11 135006516 + 110062601 110064093 L1PA16 3655 + 2083 3588 35197 571 7 28 216 1 0 24 1 0 38 0 2 6 5 6 80 75 72 78 1 0 88 2 0 286 3 0 10 chain 21206 chr11 135006516 + 110071644 110071927 AluSp 311 + 24 307 123194 29 3 5 69 2 1 147 1 0 32 chain 26100 chr11 135006516 + 110073463 110073950 L1MA2 4263 + 3620 4114 99619 5 2 0 17 6 7 13 1 0 50 1 0 34 2 0 48 21 18 35 0 25 44 4 0 8 39 41 82 18 11 47 1 0 9 chain 5142 chr11 135006516 + 110078062 110078124 MER5A 189 + 125 189 193640 47 0 2 15 chain 552957 chr11 135006516 + 110079711 110085726 L1PA2 6032 + 12 6029 1070 245 1 0 293 0 1 767 1 0 618 2 0 226 0 4 98 0 4 1923 3 0 1838 chain 5188 chr11 135006516 + 110115174 110115404 L1MB8 1703 + 1493 1660 193162 50 117 63 18 6 0 7 13 10 19 chain 3342 chr11 135006516 + 110144127 110144179 FAM 185 - 16 62 218191 6 4 0 28 2 0 12 chain 37791 chr11 135006516 + 110169919 110170441 MER41B 635 + 0 522 72428 128 0 1 83 3 0 5 0 3 223 24 23 56 chain 97706 chr11 135006516 + 110170867 110172194 LTR12C 1709 - 0 1709 37367 193 6 5 283 11 4 102 12 328 70 3 44 70 1 0 4 0 2 78 1 0 57 6 5 83 0 43 36 0 2 5 10 4 73 35 28 158 0 2 30 chain 29674 chr11 135006516 + 110174409 110174925 MER1A 529 + 0 511 85921 17 30 49 104 4 5 238 86 61 37 chain 9860 chr11 135006516 + 110175758 110175919 AluJo 314 - 11 302 161285 13 9 0 61 1 0 48 4 144 25 chain 4998 chr11 135006516 + 110178349 110178470 MLT1F1 559 + 0 122 195162 45 47 48 29 chain 21324 chr11 135006516 + 110205027 110205311 L1PA7 6471 - 1 282 122779 12 1 0 6 1 0 130 8 9 94 2 0 30 chain 25229 chr11 135006516 + 110214583 110214937 THE1B 368 + 0 368 103593 44 0 15 23 4 5 79 7 6 134 7 6 56 chain 4781 chr11 135006516 + 110217645 110217724 MER41A 554 - 369 459 197568 32 15 26 32 chain 41733 chr11 135006516 + 110218522 110219384 MER41A 554 - 6 554 66984 139 10 9 209 319 6 185 chain 43250 chr11 135006516 + 110249841 110250416 LTR71B 605 + 0 605 65118 109 18 42 34 0 5 386 1 2 27 chain 533909 chr11 135006516 + 110253542 110259628 L1PA5 6144 - 6 6144 3716 22 0 28 197 1 0 2981 1 0 662 0 21 457 0 1 198 0 3 200 0 1 1367 chain 88468 chr11 135006516 + 110264015 110266557 L1MA2 4263 - 150 2052 40198 8 1 0 46 7 0 16 8 12 54 1352 712 8 0 1 85 1 3 25 0 1 57 0 2 380 6 1 58 1 0 84 0 4 345 chain 45737 chr11 135006516 + 110266942 110267455 MER9a1 513 + 0 513 62283 513 chain 141248 chr11 135006516 + 110268788 110270512 HERVK9-int 4720 + 54 2698 25947 4 1 0 66 1 0 4 5 4 30 1 0 702 0 1 5 6 5 621 0 924 278 chain 11570 chr11 135006516 + 110270542 110270677 LTR12_ 688 + 553 688 154023 135 chain 413489 chr11 135006516 + 110270698 110275571 HERV9-int 5642 + 0 4890 9713 586 20 34 171 1 0 316 3 0 144 2 0 220 0 1 294 0 1 1257 1 0 779 1 2 168 0 1 35 0 1 509 0 5 285 1 0 4 0 1 76 chain 55186 chr11 135006516 + 110277204 110277868 LTR12_ 688 + 0 688 55595 121 0 25 21 2 1 520 chain 21878 chr11 135006516 + 110287357 110287970 LTR12 884 + 0 402 120722 65 1 42 125 316 0 45 0 66 33 2 0 26 chain 88132 chr11 135006516 + 110292090 110293154 MER11B 1079 - 0 1073 40325 306 5 7 403 0 5 99 3 0 29 0 5 219 chain 48509 chr11 135006516 + 110297789 110298413 PRIMA4_LTR 623 + 0 623 60099 332 1 0 50 3 1 9 0 1 44 11 12 174 chain 3257 chr11 135006516 + 110302663 110302790 MER3 215 + 76 209 219811 16 76 82 35 chain 9030 chr11 135006516 + 110309499 110309615 L1PA16 3655 - 733 848 165440 19 1 0 96 chain 122618 chr11 135006516 + 110311969 110313529 THE1B-int 1605 + 0 1600 30188 15 0 2 27 1 2 244 3 4 138 7 35 5 2 0 460 1 0 23 2 3 572 0 10 60 chain 7743 chr11 135006516 + 110315706 110315808 L1P4 1494 - 688 789 172635 28 2 1 72 chain 31035 chr11 135006516 + 110320784 110321247 MER1A 529 - 7 470 82461 54 8 7 127 1 0 29 3 0 107 3 4 36 5 6 56 20 23 14 chain 15913 chr11 135006516 + 110353325 110353522 L1PB 1623 - 323 520 138620 197 chain 79985 chr11 135006516 + 110388366 110389423 MER11C 1089 + 0 1073 43603 246 0 9 62 4 8 43 1 0 17 1 0 147 52 51 86 0 1 20 0 4 5 1 0 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 158546 chr11 135006516 + 110397686 110399921 L1PA15 4387 - 59 2863 23525 7 4 0 5 2 0 46 17 14 23 1 0 16 10 5 27 1 0 54 1 0 27 1 0 171 1 0 16 0 1 24 8 6 16 1 3 55 3 8 247 0 2 184 2 0 5 0 2 104 0 494 298 6 7 107 5 6 9 1 0 350 28 117 72 6 0 93 7 9 174 chain 4274 chr11 135006516 + 110403923 110403980 MER8 282 + 186 241 203554 50 2 0 5 chain 43449 chr11 135006516 + 110404958 110405470 MER9a3 513 - 0 513 64874 56 0 2 12 2 0 8 0 1 434 chain 88428 chr11 135006516 + 110419520 110420558 L1PA6 6164 - 8 1046 40212 55 0 1 83 0 7 7 8 1 756 1 0 128 chain 367193 chr11 135006516 + 110420566 110424698 L1PA4 6152 - 1 4145 11179 112 0 1 1201 0 1 172 1 0 460 0 2 444 0 1 570 5 4 163 0 9 1004 chain 329612 chr11 135006516 + 110424698 110468016 L1PA4 6152 + 130 6151 12217 450 1 0 253 17 0 1172 38786 1497 180 4 0 438 0 1 1176 1 5 595 1 2 109 0 1 118 0 7 17 chain 110189 chr11 135006516 + 110427361 110428684 L1P1 4361 - 20 1346 34161 12 2 1 23 1 0 157 8 7 53 0 2 927 1 0 33 0 5 106 chain 20969 chr11 135006516 + 110459551 110459787 AluY 311 + 38 274 124035 236 chain 18507 chr11 135006516 + 110495100 110495348 L1PA8A 6298 + 6044 6290 131479 71 9 7 168 chain 29555 chr11 135006516 + 110495744 110496060 AluYb8 318 - 2 318 86400 316 chain 33872 chr11 135006516 + 110509350 110509734 L1PA4 6152 + 5768 6152 77824 384 chain 12717 chr11 135006516 + 110511483 110511636 L1PA5 6144 + 5984 6144 149391 15 0 7 138 chain 135739 chr11 135006516 + 110521673 110523529 L1PA10 4194 + 2142 4006 26891 84 0 4 129 0 1 130 0 11 62 0 1 60 11 12 20 20 19 23 3 0 7 0 3 255 13 1 401 25 27 117 27 25 12 0 2 101 14 16 13 0 1 7 7 6 48 1 0 266 chain 4187 chr11 135006516 + 110528759 110528935 MIRb 242 + 25 200 204735 16 111 110 49 chain 63246 chr11 135006516 + 110529699 110530378 L1PA2 6032 - 418 1097 51341 679 chain 37556 chr11 135006516 + 110530378 110530790 L1PA2 6032 + 5620 6032 72743 412 chain 6836 chr11 135006516 + 110539409 110539561 Tigger1 2417 + 2260 2417 178688 11 1 0 66 50 56 24 chain 27773 chr11 135006516 + 110547001 110547366 THE1C 375 - 0 375 93790 25 1 0 219 4 15 116 chain 126947 chr11 135006516 + 110571431 110572818 L1PA3long 6157 - 117 1512 28829 492 0 4 230 0 4 665 chain 83563 chr11 135006516 + 110572818 110573743 L1PA3long 6157 + 3704 4632 42092 589 0 2 285 0 1 51 chain 6292 chr11 135006516 + 110594106 110594198 L1PA13 3608 - 174 260 182872 38 2 0 6 1 0 28 3 0 14 chain 118135 chr11 135006516 + 110595539 110597243 L1PA7 6471 - 1 1464 31760 11 1 0 145 0 1 174 0 6 296 281 30 107 0 2 63 0 1 10 0 3 123 3 1 490 chain 2850 chr11 135006516 + 110615881 110615918 L1MB3 1562 - 94 129 227849 30 2 0 5 chain 58200 chr11 135006516 + 110616716 110617462 L1PA8 5853 - 0 723 53862 93 1 0 17 1 0 41 2 3 6 1 0 14 1 0 71 2 0 21 20 3 20 1 0 434 chain 271003 chr11 135006516 + 110619936 110623781 L1PB2 3958 - 120 3925 15141 63 1 0 22 2 0 6 0 1 13 0 3 47 12 11 55 1 0 68 5 4 57 7 14 23 18 12 62 5 0 14 1 0 54 2 0 10 1 0 26 0 5 255 8 9 80 1 0 62 17 11 57 0 1 301 5 0 13 1 3 157 0 1 212 1 8 102 2 0 294 0 1 111 3 0 236 5 7 88 12 11 292 1 5 487 7 8 98 4 1 65 7 0 63 5 2 20 12 17 10 1 0 5 10 0 7 4 2 28 2 1 29 13 8 16 5 0 18 14 10 4 1 0 19 chain 40428 chr11 135006516 + 110637445 110637930 L1PA7 6471 - 4 490 68694 401 0 1 84 chain 3863 chr11 135006516 + 110638024 110638073 MER63D 473 + 64 114 209411 23 0 1 26 chain 91489 chr11 135006516 + 110640388 110641584 L1PA11 4918 + 3298 4499 39138 21 0 1 146 9 10 413 1 2 16 1 4 54 2 0 43 0 1 301 0 4 17 1 0 34 0 3 27 1 0 12 2 0 68 2 0 10 4 3 11 chain 7552 chr11 135006516 + 110661793 110661887 MER2 342 - 95 190 173846 81 0 1 13 chain 22450 chr11 135006516 + 110674071 110674317 L1PA2 6032 - 1 250 118251 157 0 3 89 chain 14408 chr11 135006516 + 110708819 110709016 L1PA8 5853 - 11 204 143187 82 1 0 19 2 1 49 1 0 12 2 1 29 chain 24835 chr11 135006516 + 110709674 110710050 THE1D 372 + 0 372 105695 52 21 13 42 1 0 77 12 10 25 8 15 138 chain 39163 chr11 135006516 + 110717078 110717568 L1PA7 6471 - 3 494 70523 331 1 2 158 chain 16758 chr11 135006516 + 110717569 110717759 L1PA7 6471 + 5770 5960 136237 190 chain 204497 chr11 135006516 + 110717841 110720411 L1P2 5180 - 1824 4441 18889 120 0 4 48 0 1 604 0 4 819 0 1 39 1 0 165 1 2 98 0 1 200 0 1 108 3 4 88 1 0 4 0 1 73 1 0 4 1 2 7 0 19 42 0 1 4 11 10 78 16 31 34 chain 4062 chr11 135006516 + 110727231 110727290 MER103C 291 - 117 175 206468 42 3 2 14 chain 10193 chr11 135006516 + 110730665 110730780 L1PA5 6144 + 6029 6144 159659 115 chain 47274 chr11 135006516 + 110752391 110752944 L1PA5 6144 + 5578 6135 60985 356 3 6 76 0 1 118 chain 34032 chr11 135006516 + 110796692 110797135 MLT2A1 477 + 0 477 77578 169 4 1 217 0 33 47 0 4 6 chain 27884 chr11 135006516 + 110819421 110819777 THE1B 368 - 0 368 93414 72 1 0 128 2 0 109 0 15 44 chain 6190 chr11 135006516 + 110833412 110833505 MER34A1 583 + 444 535 183654 69 8 6 16 chain 30032 chr11 135006516 + 110844818 110845133 AluYb8 318 + 0 315 84711 315 chain 22089 chr11 135006516 + 110899417 110899651 AluYb8 318 + 70 304 119845 234 chain 7530 chr11 135006516 + 110910843 110910932 5S 121 - 32 121 173970 89 chain 76097 chr11 135006516 + 110921903 110922807 L1PA4 6152 + 5253 6152 45422 48 3 1 232 1 2 267 3 0 193 1 8 9 8 1 133 1 0 5 chain 195875 chr11 135006516 + 110922821 110925163 HERVH-int 3825 + 1478 3825 19509 100 5 0 201 0 1 10 1 2 208 0 4 82 10 15 562 0 1 4 5 4 216 1 0 548 0 3 9 3 0 377 chain 30361 chr11 135006516 + 110926422 110926819 LTR7 482 + 1 468 83754 68 8 46 109 0 1 8 0 31 204 chain 10642 chr11 135006516 + 110965318 110965455 L1PA5 6144 - 1 140 157640 45 4 6 88 chain 7645 chr11 135006516 + 110965455 110965538 L1PA5 6144 + 5782 5865 173257 83 chain 44862 chr11 135006516 + 110993400 110994086 MER4D0 881 + 185 881 63217 147 30 31 51 2 1 46 19 28 29 8 9 14 14 12 29 0 1 153 0 1 144 chain 8845 chr11 135006516 + 111009498 111009602 L1PA3long 6157 + 6055 6157 166404 42 2 0 60 chain 45116 chr11 135006516 + 111051591 111052231 LTR66 600 + 0 581 62917 398 84 13 46 0 16 80 4 0 28 chain 23422 chr11 135006516 + 111059280 111059561 AluY 311 + 28 311 113518 49 0 1 54 0 1 178 chain 130289 chr11 135006516 + 111084423 111086919 L1M1 2793 + 527 2674 28020 7 1 0 6 1 0 14 2 0 8 3 0 8 1 0 8 151 85 39 44 31 7 2 0 6 2 0 18 5 2 9 3 1 26 1 0 28 5 3 6 1 0 54 15 12 98 1 0 87 0 1 53 11 18 14 5 4 68 2 0 21 4 0 6 3 0 98 303 0 374 10 34 273 19 26 24 0 3 125 0 4 27 30 31 35 1 13 92 1 0 61 0 2 19 2 1 5 0 1 39 1 10 56 1 0 46 chain 5546 chr11 135006516 + 111087424 111087495 L1M1 2793 - 119 189 189601 46 1 0 24 chain 123943 chr11 135006516 + 111092521 111093941 LTR12C 1709 + 1 1701 29719 435 0 1 27 0 1 185 0 278 184 1 0 4 4 2 106 0 4 312 1 0 161 chain 3184 chr11 135006516 + 111100843 111100880 MIR 256 - 116 153 221220 37 chain 22273 chr11 135006516 + 111101542 111101832 AluSp 311 - 20 311 119020 149 12 11 43 0 2 86 chain 71297 chr11 135006516 + 111159184 111159992 L1PA5 6144 - 2 809 47801 7 5 0 137 1 5 658 chain 95170 chr11 135006516 + 111163024 111164104 L1PA5 6144 + 5066 6144 38044 228 4 1 350 0 1 498 chain 303040 chr11 135006516 + 111183707 111188177 L1PB1 5432 + 1229 5420 13278 175 1 6 20 9 10 179 0 1 90 3 0 157 1 3 86 0 1 128 467 0 292 1 5 118 1 0 42 1 5 294 2 1 313 1 0 55 0 1 626 0 2 50 0 1 102 1 0 176 0 4 232 2 255 153 0 1 27 1 0 4 0 1 167 6 5 86 69 15 20 1 0 8 1 0 11 5 1 11 2 0 50 3 2 15 1 0 37 8 7 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 16 chain 41077 chr11 135006516 + 111184572 111185023 L1PA5 6144 - 4 455 67802 451 chain 15664 chr11 135006516 + 111190499 111190689 MER41B 635 + 0 191 139386 128 0 1 62 chain 4055 chr11 135006516 + 111253826 111253873 U2 167 + 6 53 206547 47 chain 23949 chr11 135006516 + 111274703 111275047 THE1B 368 + 0 368 110628 44 8 23 11 1 0 93 1 0 29 2 0 14 0 4 6 11 19 67 0 1 57 chain 107764 chr11 135006516 + 111304000 111305276 L1PA6 6164 + 4875 6159 34787 391 1 0 52 0 4 82 4 6 422 1 0 170 1 6 5 1 0 146 chain 3612 chr11 135006516 + 111336586 111336628 MER58D 378 + 322 364 213464 42 chain 3934 chr11 135006516 + 111392677 111392719 MER66B 489 + 295 337 208360 42 chain 22023 chr11 135006516 + 111435082 111435342 AluSc 308 + 22 282 120124 260 chain 11647 chr11 135006516 + 111435461 111435624 MER1B 344 + 42 216 153707 20 15 26 128 chain 8899 chr11 135006516 + 111437943 111438079 MER2 342 + 89 216 166144 8 2 0 10 9 2 107 chain 4260 chr11 135006516 + 111492021 111492273 L1ME1 1623 - 52 242 203741 24 182 120 46 chain 12420 chr11 135006516 + 111513997 111514191 L1PA8 5853 + 5657 5847 150561 22 1 0 8 9 8 45 2 1 19 1 0 87 chain 18886 chr11 135006516 + 111553847 111554074 7SK 245 + 13 240 130402 227 chain 34234 chr11 135006516 + 111561180 111561657 L1PA8 5853 - 0 471 77301 93 1 0 19 2 1 37 4 3 12 13 11 69 2 0 20 0 3 21 1 0 49 1 0 133 chain 25310 chr11 135006516 + 111599371 111599662 AluY 311 + 1 297 103172 88 0 4 39 0 1 164 chain 28754 chr11 135006516 + 111616931 111617369 L1PA8 5853 + 5428 5853 90094 93 1 0 43 1 0 43 3 1 70 12 10 52 2 1 16 5 4 49 22 17 26 chain 23551 chr11 135006516 + 111644827 111645117 AluSp 311 + 0 299 112844 19 0 9 271 chain 26351 chr11 135006516 + 111649526 111649837 AluSp 311 - 0 311 98610 311 chain 19705 chr11 135006516 + 111674887 111676513 L1MC1 2226 + 1113 2181 128076 7 6 0 21 34 33 21 92 94 101 949 417 21 1 0 14 7 12 35 6 0 28 10 9 28 42 38 54 120 106 29 chain 13193 chr11 135006516 + 111688246 111688420 AluJb 308 - 79 251 147492 19 1 0 77 3 0 12 0 2 62 chain 17076 chr11 135006516 + 111697929 111698140 AluSp 311 + 11 222 135388 211 chain 4670 chr11 135006516 + 111750957 111751016 L1PA16 3655 - 86 145 198872 59 chain 34579 chr11 135006516 + 111751016 111751537 MER41A 554 + 0 554 76783 42 23 27 51 0 3 209 1 0 30 1 5 60 0 1 28 14 19 23 2 18 28 0 1 9 chain 34726 chr11 135006516 + 111764406 111764861 L1MA2 4263 + 2983 3445 76579 353 2 4 14 4 6 62 0 3 20 chain 2970 chr11 135006516 + 111774305 111774339 L1MB7 1623 + 1385 1419 225668 34 chain 5538 chr11 135006516 + 111799127 111799191 5S 121 + 4 68 189673 64 chain 4321 chr11 135006516 + 111822906 111822955 THE1B 368 + 319 368 202960 49 chain 15668 chr11 135006516 + 111826749 111827053 L1MB2 1706 + 1378 1672 139371 22 0 4 7 7 3 115 14 15 27 7 0 7 40 36 58 chain 17320 chr11 135006516 + 111840549 111840781 L1PA16 3655 + 1702 1932 134735 90 6 5 47 2 1 87 chain 17335 chr11 135006516 + 111870898 111871141 L1MB5 1630 + 616 858 134693 4 1 0 104 2 1 73 3 4 56 chain 508076 chr11 135006516 + 111876658 111882682 L1PA6 6164 + 120 6160 6312 130 1 0 11 1 0 16 1 0 5 4 5 12 0 1 487 14 0 5 0 17 379 0 3 890 1 0 132 0 2 7 0 1 62 0 1 48 23 11 54 0 4 179 0 4 13 0 3 174 0 1 403 1 2 391 2 1 122 1 0 580 0 3 89 0 4 254 0 1 84 1 2 602 1 0 301 0 1 387 5 6 6 1 0 144 chain 144378 chr11 135006516 + 111897059 111898675 SVA_D 2077 - 10 2071 25417 328 0 10 274 0 1 97 0 1 9 0 2 30 0 1 22 0 396 257 0 40 575 6 0 18 chain 27920 chr11 135006516 + 111906925 111907236 AluSp 311 - 0 311 93278 311 chain 178082 chr11 135006516 + 111917193 111919268 L1PA7 6471 - 3 2078 21156 145 1 0 186 2 0 257 1 0 55 0 4 121 0 2 72 6 5 672 1 0 131 2 0 294 0 2 129 chain 22907 chr11 135006516 + 111962520 111962803 AluSx4 309 + 11 292 116081 4 1 0 119 1 0 158 chain 11650 chr11 135006516 + 111962818 111962976 L1PA8 5853 + 5696 5853 153695 4 0 1 37 6 5 17 1 0 93 chain 131351 chr11 135006516 + 111978728 111980820 Charlie3 2679 - 345 2105 27790 223 1 0 95 0 2 223 13 17 58 328 0 105 0 3 29 0 3 5 4 1 17 0 1 217 10 12 370 17 1 25 2 0 23 0 1 189 9 10 38 0 1 91 chain 12446 chr11 135006516 + 112002786 112002989 MER66D 528 - 0 209 150478 17 0 1 30 4 8 29 7 0 6 1 0 65 8 17 36 chain 29950 chr11 135006516 + 112005563 112005877 AluYb8 318 - 4 318 84967 314 chain 29382 chr11 135006516 + 112007358 112007675 AluYb8 318 + 0 315 87160 132 2 0 183 chain 5754 chr11 135006516 + 112007695 112007789 MER104 178 + 82 176 187613 22 16 16 56 chain 4358 chr11 135006516 + 112010050 112010114 L1MB7 1623 - 195 258 202463 5 1 0 32 0 1 15 1 0 10 chain 28995 chr11 135006516 + 112051899 112052203 AluYa5 310 - 6 310 89013 304 chain 81416 chr11 135006516 + 112052647 112053566 L1PA5 6144 + 5205 6124 43004 89 1 0 70 0 3 609 2 0 148 chain 38368 chr11 135006516 + 112069685 112070130 L1PA7 6471 - 3 448 71620 445 chain 44125 chr11 135006516 + 112089673 112090240 LTR19B 566 - 0 566 64046 52 0 1 35 7 6 149 7 5 22 2 1 261 0 2 32 chain 54061 chr11 135006516 + 112095136 112095753 L1PA6 6164 + 4698 5315 56316 617 chain 45571 chr11 135006516 + 112095755 112096271 L1PA6 6164 + 5315 5831 62440 516 chain 28574 chr11 135006516 + 112096272 112096595 L1PA6 6164 + 5833 6156 90848 323 chain 36236 chr11 135006516 + 112113625 112114074 L1PA7 6471 + 6009 6468 74574 305 5 12 93 12 15 34 chain 18162 chr11 135006516 + 112148349 112148572 AluY 311 + 82 306 132431 44 0 1 179 chain 2470 chr11 135006516 + 112177803 112177840 MER45A 178 + 113 149 233483 18 2 1 17 chain 83777 chr11 135006516 + 112194021 112194988 L1PA6 6164 - 10 977 41997 143 3 2 641 0 1 180 chain 210230 chr11 135006516 + 112194993 112197275 L1PA2 6032 - 0 2280 18489 5 2 0 359 1 0 488 0 1 1427 chain 375143 chr11 135006516 + 112197297 112201865 L1P2 5180 - 8 4591 10913 36 1 0 49 1 0 99 1 0 4 5 7 34 27 0 60 1 2 186 21 23 698 0 1 546 0 1 32 0 1 204 1 0 187 0 7 824 0 3 334 0 1 507 6 7 18 5 15 430 0 1 52 1 16 198 chain 5118 chr11 135006516 + 112208316 112208484 MLT1A0 366 + 116 315 193886 24 93 124 51 chain 105994 chr11 135006516 + 112222009 112223278 L1PA7 6471 - 2 1298 35261 143 1 18 43 0 1 554 1 0 64 0 12 13 1 0 336 1 0 112 chain 9440 chr11 135006516 + 112223278 112223385 U6 107 - 0 107 163357 107 chain 217083 chr11 135006516 + 112242416 112244896 L1PA4 6152 - 6 2504 18054 83 3 20 4 0 1 146 1 0 1348 0 1 895 chain 5559 chr11 135006516 + 112261202 112261291 MER5B 177 - 16 105 189490 30 1 0 5 7 9 15 1 0 30 chain 5091 chr11 135006516 + 112275285 112275350 LTR16A 446 + 314 379 194171 65 chain 185511 chr11 135006516 + 112297107 112299541 L1PA8 5853 + 50 5849 20463 22 2 0 10 1 0 6 59 20 197 0 4 158 5 3401 51 1 6 129 0 8 341 0 1 580 0 2 23 2 0 553 1 0 48 2 0 72 1 0 5 2 1 52 2 1 19 1 0 89 chain 298376 chr11 135006516 + 112301018 112305306 L1PA10 4194 - 33 3974 13512 11 1 0 34 3 0 148 0 6 475 7 10 33 3 0 488 2 0 177 0 4 139 311 2 4 0 1 403 0 4 449 7 6 235 6 9 21 22 3 42 1 2 6 1 0 86 0 1 36 4 11 159 0 3 275 1 0 164 1 10 214 12 11 75 2 1 5 7 0 5 0 2 11 5 0 10 1 0 7 1 0 7 1 0 20 4 2 28 37 12 8 1 0 15 2 0 21 6 5 4 1 0 9 2 0 12 chain 4272 chr11 135006516 + 112306638 112306757 L1PB1 5432 + 5331 5427 203589 15 2 0 19 17 1 4 1 0 20 2 1 13 3 2 16 2 0 5 chain 3112 chr11 135006516 + 112318399 112318435 MER52C 1267 - 365 401 222705 36 chain 24388 chr11 135006516 + 112334375 112334801 L1MA5A 2387 - 95 484 108150 62 53 18 57 2 0 35 32 34 53 1 0 123 1 0 7 chain 14940 chr11 135006516 + 112365405 112365682 L1PB1 5432 - 12 273 141506 16 1 0 13 1 0 21 1 0 26 2 0 12 8 5 12 26 23 11 1 0 44 1 0 18 2 1 51 2 0 8 chain 11408 chr11 135006516 + 112376710 112376838 L1PA5 6144 - 366 494 154659 128 chain 40945 chr11 135006516 + 112401059 112402289 L1PB1 5432 - 5 712 67980 4 1 0 4 1 0 15 1 0 13 1 0 19 7 6 20 2 0 14 1 0 5 2 0 30 34 20 41 1 0 15 2 1 37 17 15 9 2 0 3 2 0 9 1 0 13 1 0 20 5 0 9 202 25 265 2 10 11 315 0 74 chain 2811 chr11 135006516 + 112402298 112402328 L1PB1 5432 + 4677 4707 228598 30 chain 24699 chr11 135006516 + 112410164 112410499 MER51B 395 - 0 393 106445 57 0 4 89 1 0 80 0 56 78 8 7 22 chain 4122 chr11 135006516 + 112411499 112411652 MER63B 433 - 282 433 205629 24 0 4 14 6 0 20 74 74 15 chain 27159 chr11 135006516 + 112430827 112431121 AluYa5 310 - 16 310 95728 294 chain 10920 chr11 135006516 + 112431885 112432010 AluSp 311 + 15 140 156525 125 chain 95335 chr11 135006516 + 112445375 112446417 L1PA3long 6157 - 0 1043 38000 149 0 1 893 chain 5987 chr11 135006516 + 112512700 112512945 MER58C 217 - 6 216 185373 50 156 121 39 chain 132066 chr11 135006516 + 112543081 112545007 L1PREC2 3366 + 1128 3037 27620 119 9 9 53 10 13 262 0 1 26 0 2 44 3 12 93 3 0 9 4 7 367 0 1 7 0 2 225 16 17 181 0 9 122 0 1 5 7 0 37 2 0 16 5 7 31 1 0 44 1 0 4 3 0 13 52 39 16 2 0 29 4 1 11 30 16 26 7 5 27 chain 8382 chr11 135006516 + 112548140 112548273 MLT2A2 560 - 86 333 168954 13 1 6 42 11 120 66 chain 4972 chr11 135006516 + 112548646 112548710 HY4 93 - 3 64 195444 18 3 0 43 chain 541925 chr11 135006516 + 112549294 112555292 L1PA3long 6157 - 15 6153 2522 868 0 1 2402 0 1 548 0 3 77 0 1 33 0 2 454 0 1 600 0 2 245 0 128 621 1 2 149 chain 13526 chr11 135006516 + 112573717 112573912 THE1D 372 + 2 188 146260 54 18 9 123 chain 16036 chr11 135006516 + 112591294 112591516 MSTA-int 1630 + 1407 1630 138263 46 1 0 22 1 2 102 7 8 43 chain 3836 chr11 135006516 + 112596730 112596813 MIR 256 + 95 175 209828 40 25 22 18 chain 2971 chr11 135006516 + 112600373 112600406 MIRb 242 + 160 193 225641 33 chain 12527 chr11 135006516 + 112601179 112601347 Tigger3a 397 - 78 254 150131 27 4 2 117 4 14 16 chain 35666 chr11 135006516 + 112689779 112690365 MER34B 572 - 0 571 75312 26 1 0 35 1 0 17 102 93 183 4 3 180 3 0 34 chain 44730 chr11 135006516 + 112711119 112711617 L1PA4 6152 - 1 499 63352 498 chain 4664 chr11 135006516 + 112734392 112734489 MIR 256 - 32 139 198913 27 31 41 39 chain 31734 chr11 135006516 + 112767532 112767884 L1PA4 6152 - 11 362 81271 139 1 0 212 chain 16078 chr11 135006516 + 112774979 112775205 MER47A 366 + 140 366 138123 5 0 2 148 7 6 16 2 1 48 chain 18646 chr11 135006516 + 112786012 112786362 THE1D 372 + 0 362 131097 48 35 10 7 0 10 53 0 4 35 48 72 79 0 1 21 2 0 22 chain 26439 chr11 135006516 + 112795391 112795772 LTR3A 482 - 80 482 98272 137 1 2 44 10 24 23 31 37 135 chain 27791 chr11 135006516 + 112826364 112826763 L1PB 1623 + 1127 1515 93730 22 14 15 140 2 0 142 1 0 6 4 3 29 1 0 4 3 0 13 5 1 13 chain 60388 chr11 135006516 + 112881685 112882342 L1PA2 6032 - 3 659 52638 11 2 1 644 chain 19970 chr11 135006516 + 112926497 112927108 L1MA4 2864 + 2284 2803 127232 20 1 0 18 69 66 95 97 32 108 0 15 32 4 1 10 134 99 23 chain 4713 chr11 135006516 + 113042490 113042569 MLT1C 463 + 3 81 198354 19 12 11 48 chain 17422 chr11 135006516 + 113070322 113070515 L1PA3long 6157 + 5964 6157 134456 193 chain 28316 chr11 135006516 + 113086868 113087173 AluYf4 310 - 8 310 91883 176 3 0 126 chain 539516 chr11 135006516 + 113094675 113100815 L1PA5 6144 + 0 6144 2900 533 1 0 844 1 2 876 0 2 289 0 1 655 2 1 556 2 1 200 0 1 515 0 2 150 1 0 704 0 1 811 chain 28631 chr11 135006516 + 113129772 113130072 AluYa5 310 - 10 310 90605 300 chain 10689 chr11 135006516 + 113173880 113174460 L1PB1 5432 + 5172 5422 157456 47 1 0 18 6 5 37 401 76 15 1 0 22 1 0 12 1 0 18 chain 3961 chr11 135006516 + 113174566 113174618 Charlie4a 502 - 435 487 207979 52 chain 53419 chr11 135006516 + 113184084 113184790 LTR8 732 + 11 732 56743 4 0 1 16 2 11 146 0 1 119 0 3 25 1 0 200 0 1 38 8 9 147 chain 223457 chr11 135006516 + 113224569 113227979 L1PA13 3608 - 123 3522 17688 19 1 0 18 2 0 4 2 0 48 2 0 3 1 0 58 1 0 61 2 0 103 2 0 5 7 6 24 0 3 6 1 0 237 0 1 291 0 2 59 16 18 346 2 1 199 8 12 18 23 24 112 1 0 4 0 1 44 18 5 208 9 33 55 4 6 150 0 4 168 5 4 72 1 0 51 0 2 88 27 23 206 23 39 13 2 0 98 1 0 17 2 0 15 3 1 19 1 0 18 6 2 16 2 0 17 1 0 15 5 7 111 8 6 28 71 59 25 3 0 14 5 4 21 8 5 11 20 18 14 1 0 4 chain 39411 chr11 135006516 + 113250733 113251488 L1PB1 5432 - 12 737 70141 13 4 3 13 1 0 21 1 0 24 2 0 14 32 20 16 3 0 17 6 5 37 26 24 46 2 0 9 16 11 9 1 0 24 1 0 8 8 3 83 4 6 129 5 6 36 30 19 18 2 3 39 0 8 23 0 6 32 chain 101490 chr11 135006516 + 113355880 113357551 L1PB1 5432 + 3734 5082 36402 53 5 0 97 317 0 77 0 2 63 15 1 187 0 1 271 1 2 125 6 2 121 19 5 157 2 0 23 0 29 132 chain 96982 chr11 135006516 + 113394406 113395538 SVA_A 1864 + 13 1864 37566 189 1 0 29 0 15 198 0 2 16 0 708 536 12 5 103 0 2 48 chain 61808 chr11 135006516 + 113406204 113407007 L1PA8 5853 + 5052 5853 51993 14 17 12 397 0 9 80 1 0 45 2 0 69 2 1 5 8 0 9 3 11 36 2 1 19 1 0 93 chain 4577 chr11 135006516 + 113432995 113433050 tRNA-Leu-TTA 75 - 1 56 199912 55 chain 12952 chr11 135006516 + 113444216 113444426 L1PA8 5853 - 6 212 148419 86 2 1 19 2 1 30 18 17 13 1 0 39 chain 241835 chr11 135006516 + 113453459 113456470 HERVL-int 5654 + 0 5654 16678 159 8 2644 1153 8 2 153 0 15 219 0 1 78 1 2 49 0 1 299 0 1 46 1 0 403 17 5 149 5 9 17 0 1 28 0 1 129 2 3 87 chain 25623 chr11 135006516 + 113475371 113475701 L1PA6 6164 + 5834 6159 101609 169 1 0 8 5 6 91 3 1 44 3 0 6 chain 203454 chr11 135006516 + 113478592 113480810 L1PA3long 6157 + 3923 6142 18965 1350 0 1 868 chain 4841 chr11 135006516 + 113481403 113481467 HY4 93 + 29 90 196868 43 3 0 18 chain 4807 chr11 135006516 + 113519791 113519896 LTR12C 1709 - 654 722 197273 50 38 1 17 chain 559193 chr11 135006516 + 113527334 113533478 L1PA3long 6157 + 4 6157 407 563 0 4 2125 0 1 565 0 1 4 1 0 153 0 4 2733 chain 5614 chr11 135006516 + 113540080 113540148 MER5A 189 + 6 74 188937 68 chain 52477 chr11 135006516 + 113541047 113541718 PABL_B 668 + 0 668 57313 78 0 5 14 8 12 128 1 0 59 12 0 287 0 1 84 chain 59271 chr11 135006516 + 113542863 113543524 L1PA4 6152 + 5491 6152 53241 661 chain 108707 chr11 135006516 + 113571894 113574288 THE1C-int 1605 + 28 1598 34508 82 0 54 174 8 10 32 903 0 60 15 22 53 0 1 169 17 19 20 14 15 13 6 0 64 0 1 314 26 40 228 1 2 168 0 2 27 chain 41916 chr11 135006516 + 113572521 113573070 L1PA8 5853 - 0 556 66738 93 1 0 19 3 2 51 1 0 9 3 0 7 0 2 44 0 1 17 3 13 31 1 0 43 0 1 223 chain 202700 chr11 135006516 + 113583109 113585519 L1P2 5180 - 2751 5178 19012 559 1 0 199 0 1 529 0 6 337 0 15 268 1 0 54 1 0 261 7 6 43 9 8 141 chain 4239 chr11 135006516 + 113586926 113587004 MLT1I 406 - 7 86 204023 27 19 20 32 chain 128871 chr11 135006516 + 113587747 113589298 L1PA7 6471 + 4905 6459 28342 320 0 2 64 6 5 58 4 3 264 1 0 79 0 2 655 6 8 94 chain 4068 chr11 135006516 + 113602366 113602412 MADE1 96 + 49 95 206342 46 chain 135275 chr11 135006516 + 113633638 113635259 L1PA8A 6298 - 7 1644 26959 84 1 0 610 0 2 25 0 2 76 0 3 389 1 0 242 0 1 24 5 6 43 4 5 22 0 8 95 chain 7189 chr11 135006516 + 113635289 113635389 Tigger3b 1229 - 622 727 176153 33 1 6 66 chain 83183 chr11 135006516 + 113647761 113648778 LTR5A 1029 + 0 1029 42258 116 0 3 15 0 13 20 15 1 588 15 25 248 chain 23148 chr11 135006516 + 113663434 113663712 AluSc 308 + 2 279 114896 255 2 1 21 chain 3553 chr11 135006516 + 113735988 113736027 U7 62 - 15 54 214480 39 chain 24359 chr11 135006516 + 113749311 113749672 THE1A 353 - 1 353 108323 48 8 1 4 1 0 168 15 16 4 1 0 42 1 0 69 chain 113537 chr11 135006516 + 113749672 113751407 THE1A-int 1579 - 0 1428 33217 753 8 13 319 325 0 42 1 2 178 0 12 109 chain 7745 chr11 135006516 + 113755750 113755874 MER57B2 428 + 107 257 172627 17 19 45 88 chain 25192 chr11 135006516 + 113819307 113819599 AluSp 311 + 4 296 103785 292 chain 10991 chr11 135006516 + 113819613 113819743 L1PA4 6152 + 5999 6141 156231 38 0 12 92 chain 11087 chr11 135006516 + 113820213 113820434 MER4B 649 + 0 246 155860 25 2 0 22 35 45 69 14 8 25 0 23 29 chain 15184 chr11 135006516 + 113824677 113824881 L1MA4 2864 - 226 434 140814 89 0 3 14 0 2 31 3 2 67 chain 10212 chr11 135006516 + 113827343 113827477 L1PA4 6152 + 5998 6152 159560 8 0 7 36 0 8 84 0 5 6 chain 64711 chr11 135006516 + 113834834 113835613 LTR17 781 + 0 781 50692 218 8 9 100 1 0 405 0 1 40 0 1 7 chain 5141 chr11 135006516 + 113837507 113837572 MLT1A0 366 + 48 147 193664 53 0 34 12 chain 6707 chr11 135006516 + 113879951 113880032 L1MB7 1623 + 1094 1175 179634 81 chain 30214 chr11 135006516 + 113940812 113941129 AluYb8 318 - 1 318 84153 317 chain 11330 chr11 135006516 + 113967682 113968092 L1MB3 1562 + 1102 1475 154960 56 46 49 8 4 0 77 182 146 37 chain 24403 chr11 135006516 + 114058578 114058927 MER1A 529 + 178 529 108061 176 0 1 36 0 3 51 36 34 50 chain 4042 chr11 135006516 + 114060591 114060645 L1MB7 1623 + 1376 1429 206767 46 1 0 7 chain 25149 chr11 135006516 + 114132021 114132310 AluSp 311 + 0 286 104003 129 3 0 157 chain 6622 chr11 135006516 + 114137360 114137605 MSTD 398 + 0 313 180286 25 1 0 24 2 57 24 0 3 19 130 141 20 chain 3184 chr11 135006516 + 114153103 114153147 L1ME5 779 + 32 73 221223 35 3 0 6 chain 127039 chr11 135006516 + 114176070 114177501 L1PA5 6144 - 0 1430 28807 5 2 0 977 0 1 447 chain 12807 chr11 135006516 + 114195754 114195911 L1PA8A 6298 + 6136 6288 149028 52 1 0 62 4 0 38 chain 16783 chr11 135006516 + 114200028 114200352 L1PB1 5432 + 5137 5427 136154 9 1 0 10 2 0 3 2 0 8 2 0 53 3 2 14 1 0 45 1 0 15 14 1 25 7 5 4 1 0 15 2 0 24 1 0 22 1 0 12 1 0 14 3 0 9 chain 24288 chr11 135006516 + 114212453 114212756 L1PA4 6152 + 5735 6151 108721 48 4 0 94 9 126 148 chain 32250 chr11 135006516 + 114212764 114213142 L1PA5 6144 + 5761 6138 80439 234 1 0 143 chain 3398 chr11 135006516 + 114220958 114220995 MER5A 189 + 142 179 217095 37 chain 3999 chr11 135006516 + 114227999 114228072 L1MC2 1988 - 1070 1144 207393 17 14 15 42 chain 4066 chr11 135006516 + 114240742 114240792 MER58A 224 - 161 211 206393 50 chain 20963 chr11 135006516 + 114288404 114288754 THE1C 375 - 2 346 124058 35 10 3 118 29 23 10 5 11 19 8 12 18 3 0 95 chain 15540 chr11 135006516 + 114293660 114293894 L1M1 2793 - 109 352 139765 11 1 0 45 1 0 13 9 12 26 0 5 49 2 0 6 0 3 16 0 2 55 chain 27849 chr11 135006516 + 114317655 114317947 AluYd8 298 - 6 298 93529 292 chain 13605 chr11 135006516 + 114338753 114338948 MER30 238 - 0 205 145959 118 20 30 57 chain 13847 chr11 135006516 + 114343012 114343195 MER30 238 - 0 200 145076 110 4 21 69 chain 12809 chr11 135006516 + 114348826 114349138 MER67C 710 - 257 577 149022 11 4 0 32 123 136 97 1 0 44 chain 302870 chr11 135006516 + 114359170 114362891 L1PA4 6152 + 2727 6151 13288 883 1 3 674 0 2 349 0 5 515 311 0 140 0 4 75 0 1 773 chain 28535 chr11 135006516 + 114361602 114361903 AluYb9 318 + 0 301 91026 301 chain 45184 chr11 135006516 + 114363560 114364222 L1MA3 4352 - 3634 4283 62840 92 9 10 190 11 0 67 2 4 30 15 14 136 0 3 5 8 0 11 1 0 57 0 2 28 chain 241049 chr11 135006516 + 114375789 114379244 L1PA13 3608 + 86 3488 16718 4 1 0 18 1 5 23 11 10 17 1 0 14 3 0 29 21 14 69 6 4 123 14 12 17 2 0 16 6 2 19 1 0 18 3 1 15 2 0 16 1 0 38 1 0 61 2 0 89 0 4 32 0 1 90 11 13 5 2 0 188 1 0 46 42 34 770 6 5 53 0 4 16 4 1 6 0 10 32 0 1 4 1 0 192 0 1 6 4 0 14 39 25 85 0 4 54 15 9 161 4 0 14 5 6 122 0 3 166 0 1 110 2 1 37 1 0 82 1 0 32 1 0 114 1 0 62 1 0 54 2 1 5 2 0 34 0 1 12 2 0 5 2 0 20 1 0 20 chain 2617 chr11 135006516 + 114391391 114391438 L1MA9 1812 - 228 272 231467 6 1 0 11 3 1 26 chain 27201 chr11 135006516 + 114396085 114396643 LTR4 552 + 0 531 95592 56 31 27 48 36 16 19 1 0 14 34 78 19 2 0 47 19 0 69 39 14 124 chain 9143 chr11 135006516 + 114397849 114397957 U13_ 108 + 0 108 164842 108 chain 545824 chr11 135006516 + 114404023 114410160 L1PA4 6152 + 1 6146 1971 114 0 1 1337 0 4 707 1 0 195 0 1 801 0 2 20 1 0 427 1 3 1051 0 3 695 4 0 429 0 1 354 chain 24313 chr11 135006516 + 114412162 114412501 MER4E1 777 - 0 758 108592 219 8 13 7 5 0 28 0 1 51 0 418 21 chain 57816 chr11 135006516 + 114434206 114435130 L1PB1 5432 + 4480 5383 54079 148 10 8 123 6 7 166 1 19 47 1 0 105 1 0 11 1 0 24 1 0 6 1 0 13 25 19 45 7 1 14 1 0 35 15 13 12 1 0 4 19 8 18 3 1 5 1 0 14 2 0 24 1 0 13 chain 37889 chr11 135006516 + 114440468 114440964 HERV1_LTRc 486 + 0 478 72298 92 8 6 118 12 0 213 5 0 18 0 1 30 chain 255142 chr11 135006516 + 114442668 114446125 L1PBa 3878 + 216 3737 15976 21 3 1 100 9 7 52 7 42 85 1 0 27 0 1 202 0 4 215 9 14 378 0 1 80 0 2 8 4 8 29 0 1 103 22 20 157 18 11 167 7 9 68 0 1 13 24 28 495 0 2 89 0 2 41 0 4 8 2 0 9 0 1 68 1 6 134 0 4 121 10 17 149 2 0 21 3 0 236 5 6 230 1 0 23 chain 13947 chr11 135006516 + 114447973 114448260 L1PB1 5432 + 5159 5422 144764 9 2 0 52 2 1 16 1 0 44 1 0 15 69 53 21 1 0 23 1 0 11 1 0 18 chain 99934 chr11 135006516 + 114458759 114460570 HUERS-P3-int 2218 + 634 2191 36803 99 0 1 17 34 25 14 105 16 786 35 36 146 1 2 151 34 37 54 103 47 19 1 0 8 1 0 7 1 0 13 42 20 19 104 23 17 chain 315916 chr11 135006516 + 114496385 114500000 L1HS 6032 + 2 3624 12769 254 1 0 572 0 4 202 0 3 2015 1 0 509 0 2 61 chain 215632 chr11 135006516 + 114500000 114502393 L1PA3long 6157 + 3752 6145 18129 889 1 0 953 0 1 550 chain 545139 chr11 135006516 + 114504187 114510339 L1PA3long 6157 - 0 6156 2058 145 1 0 282 0 2 2211 1 3 265 0 1 2006 1 0 231 0 1 1009 chain 175225 chr11 135006516 + 114513073 114515204 L1PA7 6471 - 77 2228 21431 179 0 9 73 1 2 367 7 9 52 1 3 79 1 0 18 0 4 499 1 0 151 6 1 271 0 8 181 0 1 244 chain 59602 chr11 135006516 + 114521838 114522615 LTR12 884 - 0 884 53051 75 1 0 128 0 10 58 8 0 237 2 0 38 1 109 229 chain 111759 chr11 135006516 + 114525094 114526456 L1PA8A 6298 - 7 1366 33736 102 1 0 162 8 11 10 1 0 431 4 0 643 chain 60928 chr11 135006516 + 114526456 114527226 L1PA8A 6298 + 4117 4916 52296 21 5 1 80 1 6 30 0 17 223 1 0 386 0 12 23 chain 79514 chr11 135006516 + 114552413 114553462 MER4-int 2692 - 1623 2678 43818 145 7 8 24 6 0 166 4 3 8 0 1 143 7 17 314 0 1 113 0 1 4 0 14 7 17 2 11 0 1 12 0 1 37 2 0 22 chain 16783 chr11 135006516 + 114567559 114567844 MER44A 345 - 31 303 136161 8 0 1 43 36 30 103 12 10 9 6 0 68 chain 2924 chr11 135006516 + 114582854 114582887 U2 167 + 0 33 226600 33 chain 7124 chr11 135006516 + 114596527 114596634 MER73 639 + 470 575 176583 61 3 0 7 5 6 31 chain 87824 chr11 135006516 + 114606591 114607631 MER11C 1089 - 16 1089 40440 162 0 23 143 7 8 45 0 4 367 0 4 65 0 1 251 chain 29113 chr11 135006516 + 114632283 114632595 AluYb8 318 - 7 318 88497 185 1 0 126 chain 69161 chr11 135006516 + 114638770 114639560 L1PA7 6471 - 1137 1931 48706 343 1 2 40 1 0 277 0 4 128 chain 95775 chr11 135006516 + 114639560 114640682 L1PA7 6471 + 5339 6459 37878 275 0 1 95 3 0 467 2 0 134 1 3 145 chain 546843 chr11 135006516 + 114675946 114682067 L1PA4 6152 + 23 6151 1847 272 2 1 164 6 0 120 1 0 656 1 0 216 0 5 1120 1 0 928 0 1 842 0 4 952 0 4 444 0 3 396 chain 278893 chr11 135006516 + 114710542 114713684 L1PA2 6032 - 0 3034 14696 1802 0 4 409 0 1 511 113 0 307 chain 7955 chr11 135006516 + 114713272 114713357 L1PA2 6032 + 2087 2172 171307 85 chain 118813 chr11 135006516 + 114713684 114714978 L1HS 6032 + 1719 3015 31305 1257 0 2 37 chain 4831 chr11 135006516 + 114751834 114751912 MADE1 96 - 3 96 197005 17 5 4 10 0 16 46 chain 43919 chr11 135006516 + 114755154 114755651 L1PA5 6144 - 0 497 64310 497 chain 4204 chr11 135006516 + 114772640 114772698 L1MA3 4352 + 22 80 204483 10 0 1 4 1 0 43 chain 24937 chr11 135006516 + 114797381 114797750 THE1B 368 + 0 368 105130 43 27 41 7 14 0 83 1 0 194 chain 2156 chr11 135006516 + 114829108 114829167 MIR 256 - 74 130 237085 5 1 0 4 0 1 17 12 10 15 1 0 4 chain 3480 chr11 135006516 + 114839387 114839425 L1PB3 3668 + 3328 3366 215658 38 chain 6902 chr11 135006516 + 114889465 114889584 MER2 342 + 147 262 178165 61 28 24 30 chain 10091 chr11 135006516 + 114894967 114895099 L1PB2 3958 + 3709 3838 160130 40 2 0 26 1 0 63 chain 18090 chr11 135006516 + 114895557 114897377 THE1B 368 - 0 368 132618 47 20 19 59 2 1 13 1489 27 4 1 0 25 9 7 97 10 25 44 chain 8735 chr11 135006516 + 114895816 114895921 THE1B 368 - 263 368 167003 105 chain 26225 chr11 135006516 + 114907619 114908025 MER57B1 401 + 0 401 99113 48 11 5 133 5 11 6 6 0 24 0 7 7 7 0 134 11 12 14 chain 6971 chr11 135006516 + 114939577 114939683 MLT1C 463 + 4 113 177677 12 9 12 85 chain 34720 chr11 135006516 + 114957107 114957485 L1PA4 6152 - 13 392 76592 220 0 1 158 chain 3712 chr11 135006516 + 115009609 115009753 MER58A 224 + 61 216 211765 23 85 96 36 chain 15596 chr11 135006516 + 115067218 115067418 MER30 238 - 0 205 139597 82 0 3 40 4 6 74 chain 24244 chr11 135006516 + 115071208 115071512 AluSp 311 - 5 310 108969 249 3 4 52 chain 17436 chr11 135006516 + 115143435 115143635 L1PA2 6032 + 5835 6032 134419 191 3 0 6 chain 29340 chr11 135006516 + 115209613 115209927 L1HS 6032 - 0 314 87338 314 chain 24585 chr11 135006516 + 115209927 115210191 L1HS 6032 + 5448 5712 107060 264 chain 4656 chr11 135006516 + 115306561 115306618 MER58B 340 + 274 331 199008 57 chain 40519 chr11 135006516 + 115345122 115345577 L1PA5 6144 + 5689 6142 68566 446 2 0 7 chain 15877 chr11 135006516 + 115356153 115356498 THE1B 368 + 0 348 138716 111 0 3 6 18 16 15 68 65 12 8 16 62 16 13 29 chain 34115 chr11 135006516 + 115362402 115362818 L1PA6 6164 + 5737 6159 77460 256 6 12 154 chain 28859 chr11 135006516 + 115463268 115463574 AluYb9 318 + 1 307 89621 306 chain 46718 chr11 135006516 + 115480818 115481387 L1PA6 6164 - 2 576 61440 10 1 4 138 6 8 414 chain 120788 chr11 135006516 + 115503687 115505143 LTR12C 1709 - 0 1677 30761 84 5 4 80 0 102 211 0 4 106 3 1 5 1 0 275 1 0 15 0 119 176 0 1 59 1 0 356 0 1 78 chain 4113 chr11 135006516 + 115517931 115517981 MER51D 577 + 424 474 205742 50 chain 15979 chr11 135006516 + 115555634 115555936 L1PA15 4387 + 4036 4327 138414 68 1 0 27 1 0 54 1 0 17 38 35 19 17 14 43 2 0 14 chain 27478 chr11 135006516 + 115575059 115575418 THE1B 368 + 0 368 94721 44 0 15 113 1 0 20 4 0 102 1 0 74 chain 4146 chr11 135006516 + 115618231 115618345 L1PB1 5432 - 9 121 205287 19 1 0 11 1 0 23 44 44 15 chain 73545 chr11 135006516 + 115709725 115710556 L1PA5 6144 + 5305 6137 46766 488 0 1 343 chain 10339 chr11 135006516 + 115726406 115726534 MER85 139 + 1 139 158948 88 0 10 40 chain 120252 chr11 135006516 + 115727362 115728695 L1PA3long 6157 - 1 1333 30962 766 3 2 564 chain 416753 chr11 135006516 + 115747288 115751979 L1PA4 6152 - 0 6146 9612 1365 4 0 431 0 2 667 1 0 610 0 1 294 4 0 463 1 2 360 3 1449 372 0 14 116 chain 21254 chr11 135006516 + 115796946 115797291 THE1D 372 + 0 357 123007 61 4 14 37 4 3 70 34 36 111 7 8 17 chain 5737 chr11 135006516 + 115837543 115837649 MER30 238 - 1 99 187759 47 3 0 22 2 0 8 13 10 11 chain 545411 chr11 135006516 + 115837651 115843831 L1PA4 6152 + 0 6151 2022 353 1 2 97 16 10 118 1 0 1008 0 1 1620 1 0 44 2 1 7 0 5 483 6 0 1197 22 0 443 0 1 761 chain 3090 chr11 135006516 + 115875562 115875610 L1MB5 1630 - 53 100 223092 28 3 2 17 chain 540575 chr11 135006516 + 115875645 115881759 L1PA4 6152 + 11 6139 2724 527 0 1 440 1 0 105 0 1 151 1 0 123 5 6 220 0 1 253 0 15 703 0 2 1190 6 0 2013 5 6 371 chain 388386 chr11 135006516 + 115895086 115900464 L1PB1 5432 + 56 5420 10500 355 14 15 80 0 5 321 3 0 114 8 1 165 0 1 289 16 0 55 3 4 408 0 1 622 0 1 339 2 1 58 0 3 371 0 1 73 5 13 373 13 7 69 7 6 119 23 91 136 7 9 30 15 0 41 1 0 292 1 0 96 2 0 84 2 3 19 2 0 69 0 2 6 0 2 9 22 0 176 3 0 36 26 26 50 15 13 22 1 0 5 20 15 9 2 0 53 2 1 16 1 0 25 1 2 17 1 0 20 18 7 19 8 5 14 8 6 18 1 0 21 1 0 13 1 0 16 chain 167667 chr11 135006516 + 116016021 116018288 HUERS-P2-int 2744 + 459 2742 22319 304 0 2 25 8 46 154 10 11 70 9 5 6 0 1 112 21 0 8 2 23 454 1 5 47 6 8 512 28 9 27 10 9 143 1 0 104 4 0 37 2 1 9 13 10 15 1 0 39 3 0 34 1 0 6 1 9 10 5 3 25 chain 26989 chr11 135006516 + 116088687 116089041 THE1B 368 - 0 368 96320 20 1 2 153 2 0 24 1 0 114 0 15 9 0 1 30 chain 27894 chr11 135006516 + 116092819 116093184 THE1C 375 - 11 375 93385 14 1 0 160 1 0 6 1 2 182 chain 21611 chr11 135006516 + 116169191 116169532 L1PA16 3655 - 31 343 121735 19 43 17 10 3 0 266 chain 142481 chr11 135006516 + 116217103 116218784 SVA_C 1631 + 16 1631 25730 4 0 1 529 24 0 170 4 0 138 59 21 13 1 5 12 1 0 41 1 0 14 3 1 5 0 1 640 2 0 20 chain 2493 chr11 135006516 + 116217972 116217998 SVA_C 1631 + 818 844 152265 26 chain 2419 chr11 135006516 + 116218003 116218028 SVA_C 1631 + 460 485 234056 25 chain 5278 chr11 135006516 + 116248358 116248431 MLT1J2 417 + 318 391 192233 59 2 0 5 0 2 7 chain 25687 chr11 135006516 + 116259494 116259802 AluSp 311 - 0 311 101344 217 0 3 91 chain 22712 chr11 135006516 + 116260495 116260772 THE1D-int 1627 - 1329 1609 117026 6 0 3 271 chain 2958 chr11 135006516 + 116263865 116263899 MLT1D 503 + 66 100 225909 34 chain 18621 chr11 135006516 + 116310541 116310846 THE1B 368 - 0 368 131158 125 63 124 56 0 2 61 chain 31579 chr11 135006516 + 116320985 116321396 LTR7 482 + 0 482 81524 69 8 46 109 0 1 8 0 31 41 0 1 176 chain 5187 chr11 135006516 + 116322262 116322476 MLT1D 503 - 7 222 193171 63 132 133 19 chain 28657 chr11 135006516 + 116365401 116365699 AluYd8 298 + 0 298 90500 298 chain 27585 chr11 135006516 + 116365944 116366385 LTR46 455 - 0 455 94393 34 74 22 20 0 41 19 0 27 103 3 1 188 chain 2528 chr11 135006516 + 116398844 116398877 MER52C 1267 + 876 908 232820 9 1 0 23 chain 8582 chr11 135006516 + 116416937 116417092 Tigger2 2703 + 2485 2649 167834 61 1 2 19 24 32 50 chain 505285 chr11 135006516 + 116441544 116446989 L1PA2 6032 + 574 6025 6507 2565 1 0 2310 0 1 562 0 6 7 chain 92199 chr11 135006516 + 116489873 116490967 L1PA6 6164 - 31 1162 38900 62 0 35 32 0 2 1000 chain 26352 chr11 135006516 + 116495741 116496044 AluSq10 312 - 8 312 98609 21 0 1 282 chain 8490 chr11 135006516 + 116499778 116499998 MLT1C-int 1263 - 19 216 168355 5 1 0 29 94 73 55 1 0 35 chain 8374 chr11 135006516 + 116510747 116511198 L1MA10 1535 - 144 535 169005 24 42 49 37 187 149 19 31 0 18 6 10 5 0 3 25 1 0 19 18 14 19 chain 511320 chr11 135006516 + 116537439 116543576 L1PA6 6164 + 0 6162 6039 509 6 5 288 34 0 619 5 15 28 0 1 388 0 5 48 0 5 414 0 2 12 4 1 87 0 17 100 1 4 334 0 1 147 3 0 110 0 9 41 2 1 194 0 1 514 5 7 60 0 1 7 0 3 254 0 1 24 0 1 43 0 2 62 2 0 494 0 4 353 0 1 84 8 7 41 0 1 812 chain 31871 chr11 135006516 + 116591970 116592427 MLT2A1 477 - 0 477 81063 39 4 0 12 22 55 167 0 1 23 0 1 10 5 2 17 9 1 149 chain 12752 chr11 135006516 + 116607757 116607942 L1PB4 2604 + 2299 2474 149246 36 6 0 51 2 0 20 2 1 18 1 0 49 chain 12942 chr11 135006516 + 116650614 116650761 L1PA5 6144 + 5987 6135 148460 138 0 1 9 chain 28995 chr11 135006516 + 116712474 116712778 AluYa5 310 - 6 310 89012 304 chain 21990 chr11 135006516 + 116733517 116733806 AluSx 319 + 10 299 120267 75 2 1 52 5 6 155 chain 133170 chr11 135006516 + 116768700 116770151 L1PA3long 6157 - 8 1463 27394 835 0 4 616 chain 25502 chr11 135006516 + 116771577 116771880 AluSp 311 - 9 311 102215 170 1 0 132 chain 4712 chr11 135006516 + 116822175 116822254 MADE1 96 + 1 96 198366 41 15 31 23 chain 11555 chr11 135006516 + 116850977 116851122 MER107 203 + 0 145 154086 145 chain 12620 chr11 135006516 + 116872904 116873121 MER30 238 + 0 237 149770 17 12 14 65 5 24 6 4 0 46 3 0 5 0 2 11 0 3 14 0 1 29 chain 7982 chr11 135006516 + 116886612 116886702 HY4 93 + 0 90 171156 90 chain 33934 chr11 135006516 + 116926861 116927245 L1PA5 6144 + 5754 6138 77722 384 chain 23761 chr11 135006516 + 116972186 116972475 AluSc 308 + 17 299 111699 114 3 0 159 4 0 9 chain 3506 chr11 135006516 + 116980844 116980887 LTR12C 1709 - 872 916 156805 4 0 1 39 chain 14467 chr11 135006516 + 116980887 116981066 LTR12C 1709 - 550 776 142995 25 0 47 154 chain 57699 chr11 135006516 + 116982202 116982854 L1PA5 6144 - 1056 1709 54134 203 0 1 449 chain 89343 chr11 135006516 + 116982854 116984187 L1PA5 6144 + 5113 6135 39866 59 316 0 67 1 0 52 0 4 262 0 1 296 0 1 280 chain 309363 chr11 135006516 + 117010581 117014154 L1PA6 6164 + 2572 6162 13027 617 0 1 340 2 1 94 6 9 62 0 1 219 0 4 446 2 0 513 1 2 434 1 0 508 3 4 105 0 4 208 1 7 11 chain 85306 chr11 135006516 + 117121327 117122276 SVA_D 2077 - 0 1152 41416 6 4 0 630 0 216 187 0 2 89 11 0 22 chain 16855 chr11 135006516 + 117143052 117143319 L1PA8 5853 + 5593 5853 135958 16 2 0 70 29 26 35 2 1 19 1 0 93 chain 7293 chr11 135006516 + 117167868 117168047 LTR49 580 - 0 194 175487 75 73 88 31 chain 4766 chr11 135006516 + 117210560 117210635 MIR 256 - 88 151 197742 7 12 0 56 chain 10721 chr11 135006516 + 117238251 117238366 L1PA4 6152 - 9 124 157314 115 chain 24499 chr11 135006516 + 117268238 117268588 THE1A 353 - 2 353 107546 57 1 5 133 1 0 31 15 15 14 1 0 48 0 1 32 2 0 15 chain 15248 chr11 135006516 + 117268588 117269701 THE1A-int 1579 - 0 1100 33401 69 1 2 356 40 22 71 1 0 446 2 1 51 2 8 74 chain 526481 chr11 135006516 + 117269702 117276327 L1PA7 6471 - 1 6471 4551 4 1 0 155 1 3 490 1 0 115 1 2 5 2 0 75 1 0 202 1 2 1340 0 8 135 0 3 345 0 5 84 2 1 256 316 80 289 0 24 62 0 5 35 0 12 92 3 4 400 1 2 54 0 14 445 0 2 86 0 1 419 7 11 554 0 13 10 27 12 106 5 7 96 0 2 235 1 2 166 chain 6535 chr11 135006516 + 117276352 117276829 THE1A-int 1579 - 1100 1579 33401 462 0 2 15 chain 4468 chr11 135006516 + 117281079 117281143 MIRb 242 - 91 153 201130 9 1 0 4 1 0 49 chain 3084 chr11 135006516 + 117334080 117334113 FLAM_A 137 - 5 38 223252 33 chain 3834 chr11 135006516 + 117364934 117364984 MER58A 224 - 20 72 209872 15 0 1 29 0 1 6 chain 3706 chr11 135006516 + 117403462 117403503 MIRb 242 + 68 109 211851 41 chain 18353 chr11 135006516 + 117411336 117411571 L1PA6 6164 + 5935 6162 131928 83 1 0 132 3 0 6 4 0 6 chain 41225 chr11 135006516 + 117429318 117429804 LTR2C 499 - 0 491 67616 63 8 9 169 0 1 233 0 3 13 chain 90612 chr11 135006516 + 117437296 117438289 L1PA3long 6157 - 1 994 39302 993 chain 165565 chr11 135006516 + 117438289 117440118 L1PA3long 6157 + 3345 5179 22581 1009 0 4 268 0 1 552 chain 45171 chr11 135006516 + 117442407 117442950 MER41A 554 + 2 554 62850 117 0 3 152 0 1 191 0 5 83 chain 2408 chr11 135006516 + 117451125 117451298 MIR 256 + 73 246 234137 12 8 9 21 31 102 10 72 0 19 chain 35028 chr11 135006516 + 117516235 117516625 L1PA3long 6157 + 5767 6156 76151 385 1 0 4 chain 4518 chr11 135006516 + 117526150 117526206 MIRb 242 - 119 175 200572 56 chain 3274 chr11 135006516 + 117574619 117574705 MIRb 242 - 24 135 219468 20 34 59 32 chain 3203 chr11 135006516 + 117632235 117632297 MIR 256 + 77 138 220886 35 11 10 16 chain 219845 chr11 135006516 + 117680834 117683527 HERVH-int 3825 + 208 3120 17888 85 0 9 15 62 214 39 1 0 10 1 0 25 0 13 13 29 25 42 2 1 65 0 2 12 0 3 902 5 33 295 0 10 448 0 6 402 0 1 192 5 6 4 0 1 39 chain 29580 chr11 135006516 + 117684611 117685047 LTR7Y 441 + 0 441 86273 103 9 0 57 70 85 172 1 0 24 chain 63589 chr11 135006516 + 117718082 117718803 L1PA4 6152 - 1 724 51193 7 0 1 139 0 1 111 1 0 366 0 1 97 chain 3508 chr11 135006516 + 117763117 117763169 Charlie1a 1436 + 668 717 215237 44 3 0 5 chain 3427 chr11 135006516 + 117773874 117773921 MER65A 464 + 0 44 216633 39 3 0 5 chain 17375 chr11 135006516 + 117794339 117794562 L1PA5 6144 + 5923 6144 134581 60 6 8 6 2 0 138 2 0 9 chain 40711 chr11 135006516 + 117828194 117828740 MLT2A2 560 - 0 560 68291 138 5 16 36 13 15 151 0 1 203 chain 23544 chr11 135006516 + 117831839 117832103 AluY 311 + 41 306 112885 85 0 1 179 chain 23955 chr11 135006516 + 117835530 117835858 AluSg7 307 - 8 307 110589 20 0 1 65 32 1 79 1 2 131 chain 116078 chr11 135006516 + 117848381 117849768 LTR12C 1709 - 0 1709 32425 297 0 4 180 0 4 106 3 319 84 1 0 607 5 4 104 chain 29577 chr11 135006516 + 117897731 117898041 AluYb8 318 - 8 318 86290 310 chain 27313 chr11 135006516 + 117907500 117907818 LTR17 781 - 455 781 95231 203 0 8 115 chain 45819 chr11 135006516 + 117933476 117934030 MER41A 554 + 0 554 62210 554 chain 5475 chr11 135006516 + 117936275 117936359 MER51A 677 + 185 260 190260 14 9 0 61 chain 25877 chr11 135006516 + 118054075 118054767 L1PB2 3958 + 3460 3838 100539 83 26 25 50 1 0 49 308 0 14 2 1 70 3 1 22 1 0 63 chain 47976 chr11 135006516 + 118058834 118060920 L1PB1 5432 - 10 1541 29798 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 17 35 28 45 5 4 11 2 1 52 2 0 7 9 5 10 1 0 12 1 0 20 3 0 12 607 96 191 39 28 50 0 1 93 18 15 47 5 0 281 0 1 127 1 0 92 0 2 187 chain 2765 chr11 135006516 + 118059197 118059226 L1PB1 5432 - 167 196 229235 29 chain 6900 chr11 135006516 + 118059249 118059363 L1PB1 5432 - 212 318 178189 52 2 0 9 2 0 3 2 0 10 1 0 8 1 0 24 chain 21764 chr11 135006516 + 118060940 118061267 THE1A 353 + 13 350 121157 6 0 1 27 0 1 38 40 39 162 0 9 54 chain 126031 chr11 135006516 + 118061583 118063159 THE1A-int 1579 + 0 1579 29087 170 1 0 5 17 18 443 9 12 4 1 0 4 0 1 519 0 1 83 1 0 111 2 1 102 0 1 104 chain 18500 chr11 135006516 + 118063589 118063818 THE1A 353 + 125 353 131496 224 1 0 4 chain 9108 chr11 135006516 + 118063818 118064214 L1PB1 5432 - 1541 1942 29798 67 4 8 84 2 3 239 chain 2779 chr11 135006516 + 118065311 118065404 MIRb 242 - 124 219 229023 18 48 50 27 chain 8183 chr11 135006516 + 118152930 118153077 Tigger1 2417 + 330 487 170052 24 3 9 26 2 3 22 0 2 35 12 13 23 chain 81448 chr11 135006516 + 118154157 118156196 Tigger1 2417 + 1 1252 42989 13 0 15 14 15 0 42 16 27 67 68 69 161 4 6 36 10 12 157 0 4 358 829 18 72 0 1 45 0 3 10 3 2 119 chain 17745 chr11 135006516 + 118160687 118160922 MSTA 426 - 0 236 133579 218 5 6 12 chain 7114 chr11 135006516 + 118168427 118168519 MER53 195 + 5 97 176656 92 chain 13363 chr11 135006516 + 118188283 118188461 L1PA8 5853 + 5679 5853 146839 21 2 0 40 2 1 19 1 0 93 chain 44918 chr11 135006516 + 118195012 118195750 L1PB1 5432 + 4736 5388 63155 76 6 4 284 9 0 10 56 0 4 1 0 20 1 0 12 8 0 12 15 9 53 3 2 14 1 0 44 1 0 16 8 14 17 2 0 5 1 0 14 2 0 24 1 0 18 chain 88708 chr11 135006516 + 118200999 118202010 SVA_F 1814 - 3 1150 40108 635 48 0 213 0 15 47 0 169 68 chain 5833 chr11 135006516 + 118202010 118202072 SVA_F 1814 - 790 852 87285 62 chain 3236 chr11 135006516 + 118202072 118202108 SVA_F 1814 - 916 953 173287 17 0 1 19 chain 107933 chr11 135006516 + 118202161 118203440 SVA_D 2077 - 535 2025 34738 60 0 49 32 9 8 4 0 1 36 0 1 126 0 1 28 1 79 79 1 4 41 1 0 32 30 73 169 0 37 630 chain 5495 chr11 135006516 + 118207075 118207134 HERVL-int 5654 + 5437 5496 190100 59 chain 26173 chr11 135006516 + 118221624 118221921 AluY 311 + 3 302 99309 129 0 1 90 0 1 78 chain 3084 chr11 135006516 + 118229574 118229617 L1MB4 1306 - 664 707 223241 43 chain 24526 chr11 135006516 + 118246073 118246373 AluSc 308 - 10 308 107401 42 1 0 129 1 0 127 chain 24597 chr11 135006516 + 118283236 118283534 AluSc 308 - 11 308 107009 166 1 0 131 chain 25358 chr11 135006516 + 118304272 118304555 AluYf4 310 - 7 292 102902 203 0 2 80 chain 84083 chr11 135006516 + 118334463 118336191 HSMAR2 1300 + 1 1300 41865 13 6 4 10 4 3 16 5 8 15 1 0 164 0 1 67 10 21 54 13 18 120 313 0 13 0 1 265 1 0 63 0 1 66 23 25 41 56 61 21 144 0 142 0 3 58 0 1 24 chain 13931 chr11 135006516 + 118339709 118339864 L1PA3long 6157 - 1 156 144819 155 chain 43034 chr11 135006516 + 118351687 118352354 L1MA3 4352 - 20 651 65375 4 1 0 14 2 0 26 1 0 5 2 1 24 2 0 135 1 0 9 3 0 8 35 12 17 24 21 321 0 1 33 chain 25554 chr11 135006516 + 118353966 118354260 AluYf4 310 + 1 295 101963 131 1 0 74 0 1 88 chain 22411 chr11 135006516 + 118367741 118368017 AluSp 311 - 34 311 118431 220 12 13 44 chain 25708 chr11 135006516 + 118406903 118407209 AluSp 311 - 7 311 101254 293 3 1 10 chain 5614 chr11 135006516 + 118464708 118464780 U6 107 + 6 78 188930 72 chain 23686 chr11 135006516 + 118469203 118469498 AluSp 311 - 6 300 112112 177 1 0 117 chain 66703 chr11 135006516 + 118538921 118540716 L1MA3 4352 + 1696 4352 49786 66 4 3 18 0 1 4 24 19 42 568 1510 19 1 3 11 14 15 34 40 0 271 48 49 301 90 59 35 0 1 23 1 0 78 2 0 24 2 1 5 1 0 26 3 2 12 1 0 5 5 2 17 chain 61951 chr11 135006516 + 118542009 118543546 L1M1 2793 + 1064 1944 51921 115 1 0 71 3 1 23 2 0 30 10 0 174 0 3 28 0 3 71 21 6 82 2 0 123 684 54 43 1 0 53 chain 105441 chr11 135006516 + 118558951 118560247 LTR12C 1709 - 0 1709 35385 62 0 131 288 0 4 106 9 6 104 0 278 216 0 1 76 0 1 169 0 1 266 chain 5325 chr11 135006516 + 118576242 118576320 Arthur1A 176 - 14 93 191779 35 1 0 21 1 3 20 chain 19227 chr11 135006516 + 118585608 118585892 MER4B 649 - 313 649 129443 114 2 25 27 0 29 4 0 1 15 14 15 75 2 0 31 chain 6940 chr11 135006516 + 118586514 118586621 LTR39 781 + 43 146 177887 4 0 1 14 3 2 14 4 0 68 chain 48982 chr11 135006516 + 118589412 118591718 HERVH-int 3825 - 0 2560 15157 48 4 3 174 0 2 260 8 218 39 38 40 165 0 1 577 0 1 190 0 1 81 0 10 295 8 35 152 0 1 62 1 0 156 1 2 47 chain 73060 chr11 135006516 + 118591723 118592690 LTR5_Hs 974 - 0 974 46998 103 20 18 19 8 15 160 8 7 80 0 1 77 15 15 11 0 1 34 0 1 146 0 1 118 1 0 167 chain 519680 chr11 135006516 + 118593480 118599915 HERVK-int 6823 - 248 6823 5190 6 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 8 6 4 14 1 0 12 2 0 9 172 101 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 6 2 0 76 4 2 9 1 0 4 3 0 45 5 4 81 0 3 41 1 0 7 6 1 5 0 5 17 1 0 58 9 297 112 0 1 153 1 0 330 0 1 1243 0 1 34 0 7 1776 1 0 7 2 0 369 1 0 441 1 0 89 1 6 216 1 0 21 1 0 26 2 0 179 1 0 27 1 0 305 11 0 16 18 15 18 1 0 39 1 0 18 5 4 20 1 0 3 1 0 11 1 0 5 chain 73285 chr11 135006516 + 118599915 118600883 LTR5_Hs 974 - 0 974 46893 103 20 18 19 8 15 160 8 7 80 0 1 77 15 15 11 0 1 181 0 1 118 1 0 167 chain 26955 chr11 135006516 + 118600883 118602152 HERVH-int 3825 - 2560 3825 15157 35 16 1 426 0 8 16 1 0 47 0 1 20 23 2 12 1 0 11 2 0 30 1 0 5 8 6 14 0 32 9 4 0 13 1 0 7 1 0 24 0 1 6 1 0 5 1 0 201 1 0 110 0 11 191 6 1 20 chain 10865 chr11 135006516 + 118602571 118602705 MER4C 627 + 464 598 156724 134 chain 13060 chr11 135006516 + 118603091 118603306 LTR39 781 + 188 392 147994 63 1 0 14 9 0 8 22 21 98 chain 3607 chr11 135006516 + 118604491 118604530 MER41B 635 + 44 83 213531 39 chain 30751 chr11 135006516 + 118608853 118609235 THE1C-int 1605 + 1 440 82955 11 3 5 4 0 1 74 0 57 17 3 0 270 chain 3434 chr11 135006516 + 118610763 118611008 MER34A1 583 - 64 314 216514 37 188 193 20 chain 20786 chr11 135006516 + 118636511 118636801 AluSp 311 + 5 304 124659 15 13 9 66 3 17 34 1 0 158 chain 7429 chr11 135006516 + 118706721 118706816 HY3 101 + 3 98 174580 21 0 1 53 1 0 20 chain 29185 chr11 135006516 + 118707993 118708300 AluYa5 310 - 3 310 88125 307 chain 26337 chr11 135006516 + 118711556 118711862 AluSp 311 + 2 310 98663 139 0 1 106 0 1 61 chain 9447 chr11 135006516 + 118715945 118716097 MER30 238 + 86 238 163328 20 16 7 39 0 6 37 1 4 39 chain 31548 chr11 135006516 + 118723371 118724189 MER41B 635 - 0 465 81569 81 1 6 10 8 10 46 32 31 86 360 0 57 0 1 137 chain 9872 chr11 135006516 + 118737053 118737175 MER41B 635 + 511 634 161225 26 0 1 96 chain 65043 chr11 135006516 + 118737260 118738477 MER41-int 2638 + 1363 2319 50553 54 0 5 33 6 8 82 2 4 108 0 1 10 1 0 141 2 0 35 5 4 25 3 1 30 1 0 121 0 3 5 3 1 58 7 6 20 0 1 128 7 8 5 1 0 21 265 0 38 chain 25277 chr11 135006516 + 118747849 118748152 AluSc5 308 + 1 301 103332 63 2 0 67 1 0 170 chain 113276 chr11 135006516 + 118819809 118821109 L1PA6 6164 - 3 1308 33288 102 6 0 660 2 5 74 0 7 122 0 1 334 chain 9793 chr11 135006516 + 118831116 118831238 MER52C 1267 - 0 121 161639 25 1 0 96 chain 6442 chr11 135006516 + 118838316 118838394 L1PREC2 3366 + 2329 2407 181696 78 chain 6309 chr11 135006516 + 118841216 118841297 HY4 93 + 9 84 182723 27 6 0 48 chain 134867 chr11 135006516 + 118861711 118863258 SVA_B 1603 - 9 1603 27047 424 0 2 166 0 36 59 0 1 9 14 15 811 15 2 27 0 20 22 chain 8002 chr11 135006516 + 118865269 118865362 HY4 93 + 0 93 171040 93 chain 90525 chr11 135006516 + 118878811 118879841 LTR5A 1029 - 0 1029 39465 194 1 0 185 0 1 502 1 0 147 chain 28038 chr11 135006516 + 118884172 118884470 AluYa5 310 - 10 308 92863 298 chain 73330 chr11 135006516 + 118909981 118910870 LTR5_Hs 974 - 0 974 46871 82 0 2 19 8 7 30 5 12 559 0 33 116 0 41 23 0 3 47 chain 119816 chr11 135006516 + 118929328 118930669 SVA_C 1631 - 0 1625 31116 427 0 2 246 2 1 35 7 274 440 0 11 175 0 5 9 chain 22951 chr11 135006516 + 118946670 118946954 AluSc 308 + 15 293 115851 225 0 1 45 7 0 7 chain 24219 chr11 135006516 + 118951078 118951367 AluSq10 312 - 12 301 109105 289 chain 25503 chr11 135006516 + 118954670 118954965 AluSp 311 + 3 298 102207 295 chain 12923 chr11 135006516 + 119010425 119010703 L1MA4 2864 - 97 333 148537 21 92 53 22 4 1 139 chain 26107 chr11 135006516 + 119013762 119014062 AluY 311 + 2 302 99585 300 chain 24770 chr11 135006516 + 119028314 119028604 AluY 311 + 11 311 106056 47 0 8 65 0 2 178 chain 18237 chr11 135006516 + 119055268 119055567 THE1B 368 - 61 365 132242 67 2 1 7 1 0 16 29 36 11 1 0 55 11 12 99 chain 20458 chr11 135006516 + 119070309 119070998 MER4D1 891 + 530 884 125738 73 0 5 52 38 7 69 343 36 24 12 11 14 1 0 63 chain 4192 chr11 135006516 + 119071005 119071053 HY4 93 - 44 92 204656 48 chain 42148 chr11 135006516 + 119071964 119072482 MER41A 554 + 13 554 66456 368 3 26 147 chain 22882 chr11 135006516 + 119083063 119083340 AluSp 311 + 10 286 116177 122 1 0 154 chain 25825 chr11 135006516 + 119100855 119101149 AluYc3 301 - 6 301 100772 179 2 3 113 chain 4915 chr11 135006516 + 119109988 119110105 L1MB7 1623 - 1387 1508 196104 44 45 49 28 chain 63145 chr11 135006516 + 119127544 119128613 L1PB3 3668 - 102 1163 51384 36 4 2 25 1 0 7 1 0 10 30 8 56 4 5 15 35 36 47 13 12 16 1 0 78 50 15 11 1 0 6 2 1 105 0 1 71 10 0 16 0 2 77 2 67 176 7 6 59 2 0 95 chain 29612 chr11 135006516 + 119141147 119141455 AluYa5 310 - 2 310 86171 308 chain 5003 chr11 135006516 + 119245561 119245661 MIRb 242 + 93 181 195106 35 28 16 37 chain 81588 chr11 135006516 + 119262715 119264287 L1PB1 5432 - 5 1189 42930 5 2 0 4 1 0 14 1 0 13 1 0 15 7 6 24 2 0 15 1 0 4 7 5 14 1 4 8 15 0 15 2 1 44 1 0 15 2 1 50 3 1 10 22 21 21 58 14 125 0 3 158 322 10 183 3 0 244 4 0 74 0 1 62 chain 6502 chr11 135006516 + 119277655 119277795 L1MA5A 2387 + 2187 2295 181224 27 46 15 32 1 0 34 chain 4463 chr11 135006516 + 119298155 119298210 MLT1H2 457 + 84 139 201198 55 chain 50012 chr11 135006516 + 119308061 119309008 L1PA8 5853 - 0 646 59009 20 0 12 61 1 0 18 4 3 50 1 0 10 2 1 68 2 0 46 1 0 178 306 0 179 chain 55284 chr11 135006516 + 119313240 119314058 L1MA3 4352 - 100 922 55535 78 61 85 8 24 0 42 0 1 138 0 1 349 1 0 58 1 4 58 chain 8706 chr11 135006516 + 119325207 119325344 Tigger3a 397 + 139 276 167165 10 10 0 10 1 11 106 chain 14711 chr11 135006516 + 119331635 119331819 MER2 342 - 115 305 142231 145 0 6 39 chain 255631 chr11 135006516 + 119333228 119337459 L1MA3 4352 - 457 4315 15952 50 379 10 11 0 1 88 2 0 5 11 14 132 1 0 148 4 11 21 9 8 15 2 0 130 0 1 38 1 0 10 5 1 18 0 4 197 1 3 387 5 3 7 0 1 68 5 0 8 1 6 125 0 4 25 5 6 26 1 0 17 0 1 233 0 1 64 35 0 10 0 32 82 0 1 4 7 5 42 1 0 38 0 1 63 0 1 19 1 0 40 5 0 6 1 0 125 4 3 66 26 12 14 4 1 52 1 0 35 0 4 21 0 2 10 0 1 9 11 12 13 0 3 4 0 1 149 8 7 28 2 1 93 0 2 45 21 22 43 18 17 85 2 0 125 1 7 147 7 5 70 2 1 31 7 3 15 0 2 58 22 27 81 35 29 17 2 1 71 1 0 10 0 5 31 chain 5151 chr11 135006516 + 119346387 119346453 MER3 215 - 52 118 193535 66 chain 20348 chr11 135006516 + 119358449 119358819 THE1D 372 - 0 372 126074 172 29 34 32 12 16 15 35 37 11 9 0 55 chain 159127 chr11 135006516 + 119377722 119379573 SVA_F 1814 - 26 1805 23449 582 1 0 19 1 0 10 1 0 211 3 18 19 0 4 27 1 0 16 0 2 25 1 0 27 88 0 819 chain 6878 chr11 135006516 + 119378666 119378754 SVA_F 1814 - 746 832 94621 71 2 0 15 chain 223489 chr11 135006516 + 119432658 119435598 L1PA13 3608 + 564 3497 17687 57 4 5 5 2 0 96 1 6 1224 1 0 190 2 0 98 5 0 67 0 1 299 0 1 38 0 1 4 1 0 59 1 0 8 0 3 370 0 1 35 1 0 28 1 0 114 2 0 61 1 0 27 1 0 29 8 5 39 5 6 7 2 0 20 1 0 19 0 3 7 chain 3366 chr11 135006516 + 119436959 119436996 LTR49 580 - 539 576 217742 37 chain 15345 chr11 135006516 + 119444972 119445179 MER34B 572 - 0 213 140357 26 1 0 65 2 8 91 0 1 22 chain 29649 chr11 135006516 + 119453086 119453642 MER34C_ 573 - 0 553 86073 18 40 38 91 28 26 43 15 13 59 18 19 12 0 2 13 2 0 60 0 6 6 16 10 27 1 3 107 chain 3539 chr11 135006516 + 119463420 119463458 MER41B 635 + 511 549 214733 38 chain 23389 chr11 135006516 + 119466737 119467081 THE1D 372 + 0 341 113708 15 0 2 31 9 0 59 0 1 20 0 4 13 2 0 35 11 13 34 1 0 114 chain 31053 chr11 135006516 + 119520610 119521014 LTR7 482 - 8 482 82433 182 0 31 36 0 1 109 8 46 69 chain 3434 chr11 135006516 + 119559164 119559224 MER20 218 - 50 111 216499 22 10 11 28 chain 4349 chr11 135006516 + 119590144 119590192 MIR 256 + 49 97 202595 48 chain 4553 chr11 135006516 + 119631121 119631175 MER58C 217 + 160 214 200190 54 chain 25737 chr11 135006516 + 119719528 119719800 AluYa5 310 + 38 310 101136 272 chain 3368 chr11 135006516 + 119737930 119737972 L1MB1 2102 - 247 289 217699 42 chain 17726 chr11 135006516 + 119770264 119770506 L1PA8 5853 + 5609 5847 133631 69 2 1 9 1 0 52 2 1 19 2 1 86 chain 27579 chr11 135006516 + 119773435 119773789 THE1A 353 - 1 353 94407 154 2 0 88 2 1 90 0 1 18 chain 3311 chr11 135006516 + 119796417 119796455 LTR16E2 555 - 0 38 218761 38 chain 3306 chr11 135006516 + 119829046 119829083 MER5A1 166 - 89 126 218860 37 chain 12878 chr11 135006516 + 119843796 119843976 L1PB4 2604 - 51 221 148713 145 12 2 23 chain 7244 chr11 135006516 + 119897078 119897364 LTR12C 1709 + 773 1037 175807 64 79 0 25 78 0 15 8 143 17 chain 3278 chr11 135006516 + 119897142 119897221 LTR12C 1709 + 1125 1163 208849 34 41 0 4 chain 24176 chr11 135006516 + 119900656 119901044 THE1D 372 - 0 372 109339 179 24 27 87 44 25 54 chain 2343 chr11 135006516 + 119919483 119919723 L1MD1 2063 + 95 333 234849 6 1 0 21 193 192 19 chain 38561 chr11 135006516 + 120014209 120014688 LTR2 463 + 0 463 71354 138 26 10 315 chain 146348 chr11 135006516 + 120020596 120022343 L1P2 5180 - 1706 3453 25111 133 1 0 158 1 0 861 1 2 404 0 1 188 chain 5179 chr11 135006516 + 120028239 120028302 THE1D 372 - 82 145 193238 63 chain 2969 chr11 135006516 + 120103966 120104002 MLT2C2 476 - 111 147 225701 36 chain 12835 chr11 135006516 + 120149462 120149631 L1PA7 6471 + 6299 6468 148905 54 6 7 97 1 0 11 chain 3566 chr11 135006516 + 120151209 120151250 MIRb 242 - 125 166 214192 41 chain 5623 chr11 135006516 + 120199859 120199950 MLT1B 390 - 237 335 188844 16 12 19 63 chain 16133 chr11 135006516 + 120215773 120215967 MER107 203 - 0 197 137957 35 1 4 158 chain 4008 chr11 135006516 + 120219209 120219258 Tigger4b 360 + 139 188 207278 49 chain 24764 chr11 135006516 + 120220945 120221238 AluY 311 + 3 297 106085 129 0 1 164 chain 7199 chr11 135006516 + 120229310 120229422 MER3 215 - 32 143 176067 13 1 7 85 7 0 6 chain 3429 chr11 135006516 + 120229540 120229582 MLT1F 544 - 114 156 216591 42 chain 18914 chr11 135006516 + 120231876 120232188 MER1B 344 + 0 343 130329 23 1 35 26 2 0 43 10 8 116 33 34 58 chain 25529 chr11 135006516 + 120244515 120244815 AluSp 311 - 11 311 102101 300 chain 26354 chr11 135006516 + 120260384 120260710 L1MA3 4352 - 259 585 98595 326 chain 26114 chr11 135006516 + 120266215 120266581 THE1B 368 - 0 368 99560 129 1 0 9 1 0 16 2 6 14 0 2 23 1 0 55 1 0 10 3 0 36 0 3 65 chain 13106 chr11 135006516 + 120307316 120307506 MER2 342 + 83 281 147821 26 0 1 9 1 0 96 13 21 45 chain 21873 chr11 135006516 + 120316625 120316907 AluY 311 + 0 283 120738 27 4 1 50 0 2 43 2 4 156 chain 4035 chr11 135006516 + 120337405 120337449 MER58B 340 + 267 311 206855 44 chain 24553 chr11 135006516 + 120399249 120399634 THE1B 368 - 0 368 107234 49 33 32 111 1 0 31 29 14 131 chain 14815 chr11 135006516 + 120454995 120455180 MSTA 426 - 0 186 141895 47 0 1 138 chain 2689 chr11 135006516 + 120469000 120469048 MIRb 242 - 118 168 230344 27 7 9 14 chain 42070 chr11 135006516 + 120510759 120512584 MER41B 635 - 8 606 66532 114 1241 8 25 2 1 5 0 8 281 18 16 40 1 2 98 chain 164601 chr11 135006516 + 120541416 120543769 L1PA7 6471 - 1 2135 22727 285 0 3 433 25 0 128 1 0 54 0 1 68 0 1 139 0 101 98 9 10 15 5 0 6 9 14 149 308 0 8 0 1 36 1 0 97 0 4 144 0 4 335 chain 2591 chr11 135006516 + 120572334 120572387 L1MA9 1812 - 172 223 231807 14 13 11 26 chain 4618 chr11 135006516 + 120613237 120613289 AluYk4 311 - 23 75 199426 52 chain 4577 chr11 135006516 + 120630465 120630516 MER58B 340 - 25 76 199908 51 chain 541691 chr11 135006516 + 120631157 120637618 L1PA7 6471 - 1 6468 2560 197 6 7 135 1 0 41 3 1 111 4 5 352 1 0 760 0 4 34 0 4 465 0 4 346 6 0 294 2 1 64 0 1 66 0 2 208 1 0 607 0 1 115 0 1 307 28 10 9 0 6 1120 0 10 773 1 3 18 2 1 384 chain 6824 chr11 135006516 + 120640101 120640183 MER58B 340 - 86 168 178765 82 chain 4535 chr11 135006516 + 120651767 120651825 L1MB3 1562 - 549 606 200404 40 1 0 17 chain 28026 chr11 135006516 + 120781949 120782245 AluYg6 310 - 14 310 92909 296 chain 9975 chr11 135006516 + 120802264 120802396 MIR 256 + 42 173 160697 109 1 0 12 1 0 4 0 1 5 chain 28535 chr11 135006516 + 120876909 120877283 THE1C 375 + 0 375 91024 124 3 0 5 6 10 46 1 2 162 1 0 26 chain 6887 chr11 135006516 + 120883176 120883268 MLT1A 405 - 16 107 178295 55 1 0 36 chain 114296 chr11 135006516 + 120892187 120893512 LTR12C 1709 + 2 1709 32994 670 0 278 162 1 0 4 4 2 42 0 1 63 0 4 209 0 102 170 chain 70740 chr11 135006516 + 120940705 120941541 L1PA6 6164 + 5294 6151 48046 20 1 5 777 1 18 37 chain 4574 chr11 135006516 + 120946127 120946337 L1MD2 1676 - 1382 1595 199950 19 9 13 43 119 118 20 chain 4063 chr11 135006516 + 121004208 121004257 L1MC4 1079 - 197 246 206433 49 chain 22478 chr11 135006516 + 121034075 121034318 L1PA3long 6157 + 5914 6157 118121 243 chain 10299 chr11 135006516 + 121040940 121041120 L1MA4A 3247 - 40 210 159137 28 3 0 31 24 18 23 1 0 70 chain 559894 chr11 135006516 + 121042899 121049034 L1PA3long 6157 - 0 6153 363 2986 1 0 277 0 1 330 0 3 241 0 2 478 6 19 1816 chain 28944 chr11 135006516 + 121079529 121079831 AluYa5 310 - 8 310 89253 302 chain 69516 chr11 135006516 + 121085222 121086730 L1PB1 5432 + 4283 5427 48601 286 53 52 5 2 0 82 1 0 118 1 2 204 0 15 7 26 8 41 1 2 9 11 0 24 26 20 10 2 0 52 2 1 16 1 0 41 3 2 16 3 0 6 381 52 16 1 0 22 1 0 12 1 0 14 1 0 5 1 0 4 chain 5755 chr11 135006516 + 121090941 121091039 MLT1D 503 + 250 344 187597 28 11 10 50 3 0 6 chain 48407 chr11 135006516 + 121105141 121105761 PRIMA4_LTR 623 + 0 623 60176 144 2 4 113 1 2 28 0 1 99 0 1 160 12 10 61 chain 34724 chr11 135006516 + 121107844 121108322 HERVK14-int 1672 + 5 483 76582 4 1 0 21 1 0 9 0 2 47 1 0 49 3 2 161 15 19 14 3 1 149 chain 18817 chr11 135006516 + 121110848 121111203 LTR14B 630 + 232 630 130627 57 17 38 33 0 10 30 19 29 83 47 49 69 chain 51255 chr11 135006516 + 121151682 121152301 LTR14B 630 + 9 630 58154 7 0 2 612 chain 28094 chr11 135006516 + 121156125 121156566 LTR3B_ 500 + 4 457 92669 74 2 1 53 1 0 163 5 6 37 1 4 17 0 1 19 43 52 26 chain 26956 chr11 135006516 + 121161512 121161902 L1PA8 5853 + 5483 5847 96424 38 2 0 43 1 0 26 0 1 19 2 0 8 25 7 57 1 0 6 1 0 52 2 1 19 1 0 87 chain 5554 chr11 135006516 + 121212348 121212415 L1MB1 2102 + 1940 2007 189525 67 chain 173926 chr11 135006516 + 121249871 121252674 L1PBa 3878 + 29 2454 21601 10 2 0 8 4 1 9 12 8 14 18 11 10 2 1 34 78 30 47 1 0 25 3 1 142 7 3 112 8 6 5 0 2 18 1 0 130 7 12 308 1 0 4 5 7 623 8 7 5 2 0 35 4 11 43 0 1 274 0 2 7 2 0 156 0 1 23 5 10 23 2 1 5 321 0 240 chain 10478 chr11 135006516 + 121253254 121253508 L1PB1 5432 - 10 253 158345 18 1 0 13 12 21 17 1 2 5 2 0 14 9 6 18 30 18 8 1 0 44 2 1 16 2 1 41 chain 37661 chr11 135006516 + 121258284 121258939 L1PB1 5432 + 4768 5403 72599 65 14 13 257 58 55 10 2 0 51 1 0 12 6 5 37 1 0 7 1 0 16 3 0 6 16 6 19 18 23 20 1 0 21 1 0 12 chain 4317 chr11 135006516 + 121271428 121271481 L1MB8 1703 - 124 177 202999 53 chain 13166 chr11 135006516 + 121296103 121296299 MSTB 430 - 62 244 147593 159 24 10 13 chain 23906 chr11 135006516 + 121376996 121377358 THE1B 368 - 0 368 110878 61 1 5 7 2 0 29 0 1 71 4 6 16 2 0 49 12 0 53 11 26 44 chain 92550 chr11 135006516 + 121439659 121440733 MER11C 1089 + 0 1079 38802 313 0 4 252 1 0 207 0 1 117 0 1 72 1 2 29 6 5 76 chain 63204 chr11 135006516 + 121471606 121472292 L1PA2 6032 - 2 688 51358 686 chain 63205 chr11 135006516 + 121487451 121488226 MER4E1 777 - 8 777 51357 218 16 10 541 chain 39483 chr11 135006516 + 121508059 121508510 LTR7 482 - 0 482 70043 185 0 31 266 chain 280766 chr11 135006516 + 121510326 121513816 HERVH-int 3825 - 0 3825 14600 487 8 218 483 0 1 4 7 6 523 49 54 269 0 1 96 0 2 104 5 0 107 1 0 40 9 0 167 12 1 346 0 8 10 1 0 52 0 3 64 2 1 76 1 0 23 18 0 23 0 37 15 3 111 109 3 0 161 0 11 212 chain 37810 chr11 135006516 + 121513825 121514269 LTR7 482 - 7 482 72398 178 0 31 266 chain 15629 chr11 135006516 + 121529081 121529314 MER2 342 + 87 322 139496 17 0 2 151 10 9 28 5 6 22 chain 72961 chr11 135006516 + 121557370 121558451 L1PA16 3655 - 230 1307 47042 119 46 44 60 1 0 209 29 29 42 1 0 24 1 0 63 5 6 150 5 4 157 0 1 119 14 14 36 chain 22476 chr11 135006516 + 121606430 121606671 L1PA4 6152 - 5 246 118133 241 chain 47612 chr11 135006516 + 121622261 121622782 L1PA3long 6157 - 1388 1909 60755 521 chain 128639 chr11 135006516 + 121622784 121624172 L1PA3long 6157 + 4769 6157 28410 1388 chain 40541 chr11 135006516 + 121638957 121639489 MLT2A2 560 - 0 560 68532 147 0 11 170 1 0 5 1 2 17 3 20 188 chain 476744 chr11 135006516 + 121652133 121658274 L1PA7 6471 - 1 5765 7838 20 0 1 359 4 1 463 4 0 9 8 15 162 0 1 303 5 0 9 0 5 41 9 10 247 4 0 460 0 1 353 0 2 505 2 0 36 0 1 645 26 0 118 8 0 20 344 0 46 25 6 110 0 2 919 0 5 83 1 0 104 0 12 167 0 1 522 chain 46002 chr11 135006516 + 121667530 121668069 MER41A 554 + 13 554 62039 29 0 1 77 0 1 433 chain 82286 chr11 135006516 + 121682714 121683750 L1PA15 4387 - 1076 2113 42635 143 1 0 453 0 2 439 chain 239153 chr11 135006516 + 121692007 121694561 L1HS 6032 - 3 2567 16799 62 0 10 2492 chain 313199 chr11 135006516 + 121694561 121697890 L1HS 6032 + 139 3468 12883 3329 chain 545401 chr11 135006516 + 121725606 121732054 L1PA4 6152 + 6 6151 2023 454 6 0 120 1 0 459 0 1 1174 0 1 956 1 0 18 305 0 64 0 1 637 1 2 105 0 3 355 0 4 1540 1 0 251 chain 14938 chr11 135006516 + 121754675 121754886 MER30 238 + 0 238 141511 97 12 1 10 0 32 12 0 6 80 chain 27860 chr11 135006516 + 121767635 121767933 AluYd8 298 - 1 298 93494 183 1 0 114 chain 18338 chr11 135006516 + 121777462 121777679 AluYk11 308 + 88 305 131965 217 chain 10941 chr11 135006516 + 121782266 121782503 L1PA15 4387 + 4080 4308 156441 16 12 11 24 1 0 50 5 4 22 4 0 10 1 0 26 1 3 10 20 17 35 chain 18419 chr11 135006516 + 121782531 121782745 AluY 311 + 94 309 131714 32 0 1 182 chain 12086 chr11 135006516 + 121831046 121831246 MER30 238 - 0 238 151852 39 0 3 49 11 32 6 3 0 67 1 0 4 2 20 18 chain 273894 chr11 135006516 + 121845329 121849433 L1PB1 5432 + 647 5413 14980 109 1 2 292 0 2 338 42 29 182 4 9 364 1 6 252 317 0 106 10 6 147 3 1 99 0 1 74 0 1019 41 14 0 4 2 0 262 8 7 234 12 13 382 0 1 71 0 4 60 3 8 120 1 0 6 4 5 200 0 3 8 1 0 24 1 0 9 16 11 9 2 0 53 19 17 43 1 0 16 3 0 15 9 0 16 8 5 16 2 0 22 1 0 21 1 0 13 1 0 9 chain 4125 chr11 135006516 + 121859088 121859151 L1PB1 5432 + 5332 5391 205578 14 2 0 24 1 0 14 1 0 7 chain 193459 chr11 135006516 + 121865034 121867253 L1PA5 6144 + 3913 6144 19740 4 0 1 337 0 3 83 0 4 513 0 2 1134 0 1 6 4 5 138 chain 4801 chr11 135006516 + 121875098 121875156 U6 107 + 46 104 197342 58 chain 29102 chr11 135006516 + 121880573 121881011 MLT2A1 477 + 0 477 88546 46 2 1 95 27 32 202 24 60 22 1 0 19 chain 455034 chr11 135006516 + 121881011 121886685 HERVL-int 5654 + 0 5654 8580 98 0 1 221 0 1 139 0 2 121 1 0 251 1 2 47 4 3 53 0 1 4 1 0 71 72 13 269 0 5 171 0 1 9 9 23 46 0 2 522 1 10 264 0 3 137 0 1 50 1 2 51 1 2 418 0 1 129 0 1 133 1 0 274 3 0 359 1 0 16 0 1 4 6 5 27 0 2 26 5 4 236 11 0 6 0 12 116 4 8 441 0 1 73 3 0 93 3 0 452 0 1 219 chain 26656 chr11 135006516 + 121886685 121887058 MLT2A1 477 + 0 385 97467 47 1 0 95 27 32 68 0 2 16 0 6 119 chain 14024 chr11 135006516 + 121894587 121894885 L1MB3 1562 + 1272 1555 144485 40 13 16 23 1 0 62 43 20 5 2 0 49 2 11 22 11 10 25 chain 22781 chr11 135006516 + 121923786 121924044 L1PA4 6152 + 4505 4763 116672 258 chain 122108 chr11 135006516 + 121924044 121925414 L1PA4 6152 + 4773 6143 30343 1370 chain 25463 chr11 135006516 + 121936243 121936620 THE1C 375 + 1 375 102393 124 9 6 52 1 2 5 1 0 20 0 3 58 0 3 5 14 9 62 1 0 25 chain 25661 chr11 135006516 + 122013213 122013522 AluY 311 + 2 311 101445 124 1 2 129 1 0 54 chain 43452 chr11 135006516 + 122042538 122043021 L1PA3long 6157 - 0 483 64871 483 chain 64131 chr11 135006516 + 122069534 122070271 L1PA5 6144 + 5394 6132 50950 342 0 1 395 chain 8902 chr11 135006516 + 122094242 122094471 L1MB8 1703 - 327 552 166129 23 1 0 4 0 1 49 99 95 53 chain 9963 chr11 135006516 + 122106984 122107100 L1PB 1623 + 750 866 160760 116 chain 47981 chr11 135006516 + 122132855 122133392 L1PA3long 6157 - 12 549 60500 537 chain 79595 chr11 135006516 + 122133392 122134268 L1PA3long 6157 + 4758 5634 43782 876 chain 27074 chr11 135006516 + 122168170 122168461 AluY 311 + 19 311 96022 113 0 1 178 chain 155273 chr11 135006516 + 122221957 122223757 L1PA6 6164 + 4363 6162 23951 105 0 1 566 1 0 280 1 0 847 chain 14480 chr11 135006516 + 122227442 122227599 L1PA2 6032 - 4 161 142948 157 chain 103393 chr11 135006516 + 122248871 122250398 L1PB1 5432 + 3921 5420 35898 41 2 1 162 0 3 347 2 7 4 1 0 131 14 19 27 4 0 50 7 8 134 11 7 142 0 1 41 0 1 5 1 0 34 0 4 13 24 18 17 1 0 9 1 0 9 20 14 50 2 1 16 1 0 43 1 0 16 3 0 7 14 5 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 126973 chr11 135006516 + 122259520 122261027 L1PA6 6164 - 2 1510 28820 6 4 0 314 1 0 135 0 2 385 1 5 661 chain 99342 chr11 135006516 + 122271125 122272455 L1PA11 4918 + 3180 4504 36943 77 0 5 254 5 7 17 0 1 132 0 1 660 6 0 14 22 18 22 23 21 66 3 1 12 1 0 16 chain 13031 chr11 135006516 + 122289879 122290039 MER57B1 401 - 0 159 148124 11 1 0 148 chain 3368 chr11 135006516 + 122299261 122299313 L1MB5 1630 - 206 257 217700 31 2 1 19 chain 39760 chr11 135006516 + 122307526 122307971 L1PA4 6152 + 5708 6152 69673 354 1 0 90 chain 119172 chr11 135006516 + 122315687 122317610 L1PB1 5432 - 18 1552 31345 10 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 29 15 2 15 1 0 44 1 0 16 2 1 52 2 0 9 7 3 10 1 0 31 23 0 10 11 4 475 3 0 166 325 0 580 chain 34769 chr11 135006516 + 122318635 122319042 L1PA6 6164 - 489 894 76519 13 3 1 391 chain 31375 chr11 135006516 + 122319042 122319415 L1PA6 6164 + 5790 6162 81862 41 0 1 324 2 0 6 chain 157862 chr11 135006516 + 122347581 122349261 L1HS 6032 + 4353 6032 23616 1527 1 0 152 chain 44357 chr11 135006516 + 122367043 122367608 L1PA8 5853 - 0 557 63743 93 1 0 13 1 0 6 2 1 52 1 0 9 1 0 67 7 5 43 1 0 268 chain 7970 chr11 135006516 + 122373368 122373575 L1MA10 1535 - 306 512 171220 20 76 74 22 6 8 48 1 0 34 chain 5170 chr11 135006516 + 122375175 122375238 MER53 195 + 24 87 193345 63 chain 28986 chr11 135006516 + 122381428 122381742 L1PA2 6032 + 5716 6030 89053 314 chain 39340 chr11 135006516 + 122389083 122389543 LTR2 463 + 0 463 70267 55 0 3 405 chain 35960 chr11 135006516 + 122398865 122399383 L1PA13 3608 - 120 626 74944 20 1 0 19 3 1 5 2 0 49 1 0 8 1 0 51 1 0 62 2 0 114 1 0 7 0 1 18 10 8 143 chain 34358 chr11 135006516 + 122417234 122417733 LTR7 482 + 0 482 77118 114 52 1 110 0 1 4 0 31 158 12 14 49 chain 275250 chr11 135006516 + 122417735 122422075 HERVH-int 3825 + 0 3825 14913 333 2 1 201 1 0 13 21 50 14 7 6 13 21 0 18 3 23 26 2 1 80 1 0 290 0 1 158 15 0 172 418 71 129 4 3 178 15 0 140 1 0 7 62 64 205 45 49 142 1 2 268 2 1 38 0 1 276 198 32 9 1 0 810 chain 36663 chr11 135006516 + 122425861 122426310 LTR7 482 + 0 482 74008 266 0 31 122 12 14 49 chain 79247 chr11 135006516 + 122427348 122428497 LTR12D 1347 + 0 1347 43931 39 7 13 197 6 8 16 0 1 24 3 38 201 0 31 124 103 26 17 1 0 103 12 13 83 0 200 213 chain 8407 chr11 135006516 + 122427967 122428068 LTR12D 1347 + 575 676 159435 101 chain 12428 chr11 135006516 + 122429410 122430547 L1MA6 2487 + 1928 2392 150538 22 1 4 48 1 0 21 9 14 5 0 3 24 36 62 44 0 5 7 863 152 41 4 1 11 chain 6741 chr11 135006516 + 122430654 122430727 tRNA-Lys-AAA 73 + 0 73 179389 73 chain 23220 chr11 135006516 + 122432800 122433099 AluSp 311 - 2 300 114598 132 8 7 159 chain 12419 chr11 135006516 + 122436008 122436160 L1MA5A 2387 + 1362 1512 150565 124 2 0 26 chain 7755 chr11 135006516 + 122449920 122450013 U6 107 - 8 101 172568 93 chain 39851 chr11 135006516 + 122450703 122451209 LTR10F 562 + 0 562 69533 174 0 49 7 5 8 11 9 16 13 4 0 226 0 1 57 chain 146142 chr11 135006516 + 122452602 122454408 L1PA8 5853 - 0 1776 25139 93 1 0 19 2 1 49 14 12 67 7 5 45 1 0 528 0 1 23 2 0 408 25 6 275 4 1 243 chain 7283 chr11 135006516 + 122548786 122548906 MLT1A 405 - 254 376 175565 19 22 24 79 chain 25012 chr11 135006516 + 122551173 122551461 AluSp 311 - 14 302 104725 288 chain 28071 chr11 135006516 + 122563574 122564061 LTR7Y 441 - 8 441 92752 105 72 80 42 62 0 206 chain 24470 chr11 135006516 + 122573852 122574146 AluSc8 310 + 0 296 107706 26 1 0 106 0 3 161 chain 24106 chr11 135006516 + 122675750 122676441 THE1B 368 - 11 349 109715 63 1 0 75 1 0 40 0 1 10 1 0 1 366 0 112 0 15 21 chain 3427 chr11 135006516 + 122693105 122693145 LTR8 732 + 484 524 216624 40 chain 11565 chr11 135006516 + 122694445 122694620 LTR48 738 - 319 499 154046 114 19 24 42 chain 284934 chr11 135006516 + 122695540 122701860 HERVH-int 3825 + 0 3825 14356 336 1 0 194 1 0 11 1 0 4 0 1 24 1 0 10 1 0 11 61 0 8 1 31 13 121 0 12 2 1 27 2 0 14 1 0 20 65 0 62 0 1 4 2 0 57 4 0 385 15 0 201 9 0 31 0 2 10 1 0 4 2494 0 211 4 31 290 0 4 62 23 30 968 9 11 39 8 218 260 0 2 225 chain 4282 chr11 135006516 + 122696144 122696196 HERVH-int 3825 + 482 533 195791 50 1 0 1 chain 227537 chr11 135006516 + 122697278 122699759 L1PA2 6032 + 3545 6032 17448 1637 0 4 830 0 2 14 chain 24012 chr11 135006516 + 122746777 122747082 AluSp 311 + 0 295 110258 124 7 0 162 3 0 9 chain 4574 chr11 135006516 + 122768240 122768305 MIR 256 - 104 171 199949 47 1 3 17 chain 25920 chr11 135006516 + 122772299 122772595 AluYk4 311 + 0 296 100338 296 chain 17543 chr11 135006516 + 122894753 122894954 AluSp 311 + 95 296 134148 201 chain 24656 chr11 135006516 + 122916291 122916587 AluY 311 + 6 300 106691 117 6 4 173 chain 3266 chr11 135006516 + 122928784 122928851 U14 88 - 0 69 219652 22 19 21 26 chain 7889 chr11 135006516 + 122976823 122976956 MER30 238 + 91 233 171737 13 17 23 25 0 6 32 3 0 43 chain 28783 chr11 135006516 + 123013325 123013633 AluYb8 318 - 9 318 89968 41 0 1 267 chain 18325 chr11 135006516 + 123072055 123072274 AluSc8 310 + 78 300 132001 54 0 3 165 chain 25347 chr11 135006516 + 123075905 123076198 AluSp 311 - 19 311 102970 181 1 0 111 chain 23672 chr11 135006516 + 123093479 123093859 MSTA 426 + 0 426 112188 108 20 48 49 3 1 8 0 2 20 23 21 39 1 21 109 chain 21824 chr11 135006516 + 123094487 123094753 AluSc8 310 + 38 307 120927 94 0 3 172 chain 2002 chr11 135006516 + 123095625 123095688 L1MA4 2864 + 2724 2780 238598 14 18 13 14 3 1 14 chain 43127 chr11 135006516 + 123130042 123130554 MER9a1 513 + 0 513 65260 202 8 9 302 chain 40999 chr11 135006516 + 123131117 123131743 MER41B 635 - 9 635 67907 41 31 36 40 3 4 22 28 27 295 6 0 22 13 14 125 chain 85092 chr11 135006516 + 123150410 123151418 LTR5A 1029 + 0 1029 41485 89 1 0 44 1 14 102 0 9 771 chain 53963 chr11 135006516 + 123151800 123152491 L1PA8 5853 + 5158 5853 56394 120 0 10 37 0 1 238 2 1 43 2 0 63 9 8 14 1 0 47 2 1 19 1 0 93 chain 10218 chr11 135006516 + 123172099 123172232 U8 134 + 0 134 159516 44 1 2 88 chain 29746 chr11 135006516 + 123205509 123205925 LTR3A 482 - 40 457 85669 18 15 0 8 6 20 6 0 1 130 1 0 98 4 5 33 0 1 97 chain 18822 chr11 135006516 + 123213578 123213913 MSTA 426 + 6 392 130601 16 1 7 37 12 11 30 20 44 55 4 0 14 0 8 8 11 8 49 3 24 75 chain 35072 chr11 135006516 + 123307471 123307860 L1PA4 6152 - 9 398 76088 389 chain 20953 chr11 135006516 + 123311501 123311849 THE1B 368 + 0 368 124090 28 4 0 16 0 15 113 62 71 125 chain 22312 chr11 135006516 + 123333374 123333609 SVA_F 1814 + 1579 1814 118866 235 chain 4413 chr11 135006516 + 123425039 123425114 LTR41 747 - 1 78 201760 16 4 7 15 1 0 39 chain 4205 chr11 135006516 + 123433202 123433316 MER58B 340 - 136 256 204478 17 1 0 29 46 53 21 chain 7742 chr11 135006516 + 123473090 123473179 L1PA4 6152 - 9 98 172649 89 chain 24081 chr11 135006516 + 123526511 123526795 AluSp 311 - 27 311 109864 284 chain 44353 chr11 135006516 + 123532495 123533025 THE1B-int 1605 - 5 538 63751 256 0 1 198 0 2 76 chain 27970 chr11 135006516 + 123534753 123535055 AluYa5 310 - 9 310 93111 208 1 0 93 chain 26438 chr11 135006516 + 123538243 123538595 THE1B 368 + 0 364 98276 44 0 15 113 1 0 139 10 8 45 chain 15060 chr11 135006516 + 123574709 123574930 MER30 238 - 0 238 141139 99 1 0 10 18 36 93 chain 97939 chr11 135006516 + 123583189 123584391 L1PA7 6471 - 5 1211 37298 140 5 13 8 8 0 99 0 2 514 8 7 66 0 3 354 chain 15780 chr11 135006516 + 123613240 123613476 MER4A1 472 - 226 472 139019 70 0 5 17 6 5 108 4 8 14 5 7 12 chain 4663 chr11 135006516 + 123614043 123614126 MLT2B2 565 - 470 556 198930 36 6 8 17 1 2 23 chain 74622 chr11 135006516 + 123619229 123620307 L1PA15 4387 - 31 1078 46200 27 5 0 14 3 1 44 14 11 32 1 0 10 1 0 11 4 0 22 1 0 50 4 3 11 6 9 7 1 0 97 4 0 3 0 1 70 1 0 26 20 16 56 4 0 18 1 0 4 1 0 249 1 0 255 chain 28003 chr11 135006516 + 123630460 123630758 AluYb8 318 + 15 313 92992 298 chain 24597 chr11 135006516 + 123638834 123639484 MSTA 426 + 0 389 107008 104 0 22 7 0 2 54 315 0 47 2 0 58 0 32 63 chain 22681 chr11 135006516 + 123641876 123642233 THE1D 372 - 0 364 117160 173 2 0 5 25 34 14 20 0 9 1 21 108 chain 2947 chr11 135006516 + 123651894 123651925 U2 167 - 136 167 226142 31 chain 194890 chr11 135006516 + 123659058 123661728 MER4-int 2692 - 12 2682 19591 14 0 1 45 0 1 24 0 1 17 24 20 161 17 9 92 1 2 18 0 3 4 1 0 323 2 0 52 0 1 81 1 2 29 1 0 26 1 0 4 0 1 10 2 0 218 14 9 68 0 1 216 1 0 4 0 4 23 5 8 123 0 2 133 2 0 11 3 4 24 6 0 13 0 4 27 0 1 15 0 1 104 4 1 65 1 2 74 0 2 15 5 14 435 0 1 18 2 0 37 0 1 4 2 1 20 2 0 26 chain 34388 chr11 135006516 + 123664948 123665397 MER4A1 472 - 0 472 77080 209 10 31 216 0 2 14 chain 47557 chr11 135006516 + 123667674 123668335 LTR76 689 - 0 682 60803 32 17 16 357 1 2 103 20 40 90 5 6 36 chain 506558 chr11 135006516 + 123694869 123701061 L1PA6 6164 - 2 6163 6429 6 4 0 147 0 1 27 0 1 4 1 0 469 0 3 37 7 20 132 2 0 279 0 1 49 1 3 216 24 1 87 1 0 30 4 0 239 1 0 472 9 8 147 3 0 86 0 1 5 3 0 38 1 6 457 0 1 4 2 0 162 1 2 472 6 0 6 0 6 188 32 15 11 1 0 25 0 3 104 0 1 292 0 1 1330 1 0 32 0 15 10 16 0 241 1 0 5 1 2 261 chain 102652 chr11 135006516 + 123702173 123703802 L1PB1 5432 + 3835 5422 36092 5 0 1 88 1 0 285 12 15 346 0 1 52 3 0 24 0 6 45 0 2 107 0 1 85 32 14 93 1 0 98 13 11 16 4 3 10 2 1 12 31 25 39 3 2 14 1 0 22 0 2 20 2 1 9 124 103 11 1 0 18 chain 27616 chr11 135006516 + 123706364 123706680 L1PA8A 6298 + 5975 6291 94308 316 chain 94547 chr11 135006516 + 123706959 123708159 L1PA8 5853 - 0 1200 38196 93 1 0 19 2 1 61 1 0 71 2 0 44 1 0 213 0 11 244 1 2 4 1 0 30 0 2 5 1 0 51 10 4 345 chain 289376 chr11 135006516 + 123737771 123741370 HERVH-int 3825 - 0 3825 14061 379 37 38 313 0 3 192 18 6 314 8 9 123 6 1 1603 1 4 45 3 8 7 2 0 15 0 2 12 123 352 30 0 1 34 2 1 124 0 1 208 chain 4515 chr11 135006516 + 123743334 123743670 MER4E1 777 + 0 335 54604 21 2 0 79 0 1 234 chain 19371 chr11 135006516 + 123743702 123743990 THE1B 368 - 61 368 129022 64 5 4 7 1 0 17 4 8 8 1 0 5 2 4 21 1 0 37 1 18 114 chain 160469 chr11 135006516 + 123745246 123747132 L1PA7 6471 - 10 1900 23276 153 3 4 668 1 0 12 0 3 120 0 1 208 0 1 342 1 0 378 chain 5859 chr11 135006516 + 123747132 123747568 MER4E1 777 + 335 775 54604 55 0 1 150 17 20 214 chain 22607 chr11 135006516 + 123808253 123808616 THE1D 372 - 0 372 117559 32 1 0 24 7 0 6 0 4 82 51 64 160 chain 172465 chr11 135006516 + 123822749 123825010 L1PA10 4194 + 1838 4099 21766 345 0 1 4 1 0 24 10 0 308 12 11 4 0 1 70 18 17 20 16 14 14 0 4 53 1 0 11 1 0 92 0 1 83 6 9 372 0 6 405 0 1 391 chain 109623 chr11 135006516 + 123836818 123838079 L1P1 4361 - 1176 2434 34294 452 0 5 140 0 1 121 15 0 264 1 7 268 chain 150384 chr11 135006516 + 123838079 123839773 L1PA5 6144 + 4437 6139 24554 7 0 1 849 0 5 790 2 4 46 chain 273300 chr11 135006516 + 123851276 123855112 L1PA10 4194 - 33 3859 15003 11 1 0 33 8 6 16 1 0 5 9 11 7 1 0 12 3 10 38 0 1 73 6 8 224 0 1 4 1 0 132 9 5 16 39 38 213 9 17 93 3 2 54 1 0 7 7 1 423 0 3 18 19 16 40 1 0 366 13 9 79 16 20 479 9 10 171 5 4 4 0 1 4 0 1 108 0 1 672 9 15 187 15 13 73 1 0 11 13 0 15 1 0 9 1 0 8 9 7 21 chain 33343 chr11 135006516 + 123858037 123858415 L1PA3long 6157 + 5772 6157 78667 240 0 7 138 chain 93706 chr11 135006516 + 123858732 123859764 L1PA3long 6157 + 5119 6157 38438 191 0 4 670 0 2 171 chain 102235 chr11 135006516 + 123875752 123877042 HERVL-int 5654 - 992 2307 36207 52 1 0 239 0 4 275 5 6 284 0 21 434 chain 60818 chr11 135006516 + 123888912 123889665 L1PA7 6471 - 3 758 52421 101 0 3 5 3 0 139 0 1 28 10 9 328 0 2 139 chain 12202 chr11 135006516 + 123903772 123903907 L1PA5 6144 - 10 145 151416 135 chain 15412 chr11 135006516 + 123903907 123904081 L1PA5 6144 + 5821 5995 140161 174 chain 8300 chr11 135006516 + 123918218 123918398 L1MA3 4352 - 0 171 169395 22 57 50 22 2 0 77 chain 15491 chr11 135006516 + 123923262 123923450 L1PA8A 6298 + 6097 6290 139923 53 0 2 33 0 1 60 0 2 42 chain 13602 chr11 135006516 + 123968816 123969238 L1MA8 2339 - 6 395 145969 34 32 20 12 2 1 10 1 0 19 36 36 44 4 1 17 0 1 14 1 0 6 50 37 70 33 32 23 1 0 4 1 0 8 chain 13312 chr11 135006516 + 123974803 123975047 MER2B 336 - 68 316 147042 110 19 20 15 7 8 33 12 13 20 1 2 27 chain 24751 chr11 135006516 + 123995990 123996280 AluYk4 311 - 13 302 106170 172 1 0 117 chain 191203 chr11 135006516 + 123997747 123999999 L1PA7 6471 - 20 2314 19943 108 0 3 309 1 2 327 0 2 79 1 0 20 0 2 686 0 31 161 0 1 79 0 1 375 4 5 84 0 1 18 chain 117950 chr11 135006516 + 124000011 124001463 L1P3 4156 - 17 1468 31821 24 2 1 7 2 0 369 5 1 116 1 0 4 0 1 7 1 2 57 0 4 156 1 0 106 11 12 84 0 1 499 chain 29297 chr11 135006516 + 124006226 124006536 AluYa5 310 - 0 310 87588 310 chain 7821 chr11 135006516 + 124028253 124028419 L1PB1 5432 + 5236 5384 172184 44 1 0 16 1 0 4 19 9 18 8 5 14 2 0 24 1 0 14 chain 27131 chr11 135006516 + 124035229 124035530 AluYk4 311 - 10 311 95830 301 chain 64045 chr11 135006516 + 124037172 124038191 L1PREC2 3366 - 320 1303 50991 36 17 15 20 41 24 29 3 1 15 6 1 18 44 33 4 1 0 21 19 23 54 2 0 39 2 1 16 1 2 631 chain 102545 chr11 135006516 + 124040663 124041969 LTR12C 1709 - 0 1709 36122 74 1 0 71 0 101 235 0 4 106 4 2 4 1 0 70 9 8 17 0 278 132 0 1 225 0 43 64 26 21 65 14 0 188 chain 33559 chr11 135006516 + 124061046 124061531 LTR19B 566 + 2 490 78307 163 0 3 21 13 14 99 1 0 40 2 1 40 36 37 70 chain 13538 chr11 135006516 + 124063549 124063893 L1PB1 5432 + 5118 5422 146220 14 2 0 6 3 2 4 1 0 13 6 2 9 2 0 52 3 2 9 7 6 37 8 7 15 16 12 18 9 6 14 2 0 15 19 4 5 1 0 21 1 0 13 1 0 18 chain 5680 chr11 135006516 + 124070151 124070217 LTR1 825 - 724 790 188303 66 chain 42083 chr11 135006516 + 124071153 124072097 LTR1 825 + 116 817 66514 66 321 14 34 60 116 32 1 0 27 1 4 16 0 1 217 0 2 53 0 1 36 0 1 40 1 2 39 chain 2815 chr11 135006516 + 124080121 124080155 MER52D 1964 - 802 835 228553 4 1 0 29 chain 3134 chr11 135006516 + 124080283 124080317 MER52D 1964 - 779 813 222296 34 chain 153818 chr11 135006516 + 124105991 124107687 L1PA3long 6157 - 724 2430 24111 251 0 10 1445 chain 65300 chr11 135006516 + 124107687 124108401 L1PA3long 6157 + 5443 6157 50424 714 chain 108699 chr11 135006516 + 124115768 124116970 L1PA3long 6157 - 2 1203 34511 870 1 0 331 chain 27067 chr11 135006516 + 124133254 124133554 L1PA4 6152 - 9 309 96047 300 chain 47419 chr11 135006516 + 124140601 124141171 LTR14C 587 + 0 570 60886 570 chain 20898 chr11 135006516 + 124150264 124150540 L1PB1 5432 - 1717 1997 124281 126 0 1 76 7 10 67 chain 119559 chr11 135006516 + 124150562 124152266 L1PB1 5432 + 3726 5395 31195 6 3 0 237 0 1 202 1 0 92 0 5 359 3 0 21 0 6 60 2 0 87 8 13 85 6 0 83 3 1 119 1 2 9 3 0 24 1 0 7 25 17 5 2 0 52 1 0 18 1 0 43 1 0 18 3 0 13 9 0 16 8 5 14 2 0 24 1 0 21 1 0 4 chain 78719 chr11 135006516 + 124152657 124154007 L1PA7 6471 + 5416 6454 44178 186 0 1 6 1 0 12 349 30 49 0 2 47 7 0 92 2 3 48 0 2 413 1 2 60 5 13 72 chain 9924 chr11 135006516 + 124164397 124164526 MER85 139 + 0 139 160958 88 1 11 40 chain 9119 chr11 135006516 + 124192064 124192208 L1PA8 5853 - 0 147 164972 84 10 14 14 3 2 33 chain 23572 chr11 135006516 + 124194302 124194621 L1PA8 5853 - 1 314 112730 92 1 0 19 2 1 51 8 7 72 2 0 46 1 0 25 chain 40877 chr11 135006516 + 124197361 124197906 LTR19B 566 + 0 566 68051 26 3 13 162 5 15 211 6 8 62 0 2 14 4 1 16 1 0 4 3 4 28 chain 30365 chr11 135006516 + 124197909 124198367 L1PB1 5432 - 151 602 83749 44 1 0 12 6 5 20 0 2 19 0 2 7 3 1 10 2 0 3 2 0 10 1 0 8 1 0 24 7 0 6 0 5 116 8 9 148 chain 39114 chr11 135006516 + 124205854 124206277 L1PA2 6032 + 5609 6028 70583 97 4 0 322 chain 8855 chr11 135006516 + 124206475 124206579 L1PA5 6144 - 0 104 166349 104 chain 100866 chr11 135006516 + 124207077 124208186 L1PA4 6152 - 16 1125 36546 1109 chain 12151 chr11 135006516 + 124217975 124218298 L1MA5 2750 + 54 365 151604 12 8 6 8 3 0 6 2 0 21 1 0 4 5 6 60 62 60 40 1 0 36 21 19 33 chain 74088 chr11 135006516 + 124221015 124221882 L1PA7 6471 + 5591 6461 46466 30 1 0 77 0 2 231 0 1 388 0 1 140 chain 4225 chr11 135006516 + 124224322 124224385 MSTC 436 + 332 394 204223 19 5 4 39 chain 6353 chr11 135006516 + 124231762 124231839 LTR73 568 - 435 512 182353 77 chain 56964 chr11 135006516 + 124232756 124233423 L1PA7 6471 + 5799 6466 54552 667 chain 27167 chr11 135006516 + 124238980 124239281 L1PA2 6032 - 0 439 95702 235 0 138 66 chain 195464 chr11 135006516 + 124256155 124258295 L1PA3long 6157 - 0 2140 19542 2140 chain 10341 chr11 135006516 + 124260254 124260436 MER30 238 - 0 197 158938 48 3 0 29 37 55 65 chain 277495 chr11 135006516 + 124261063 124264158 L1PA3long 6157 + 3043 6157 14775 92 0 5 30 3 1 321 0 3 1745 0 2 284 0 8 491 1 4 128 chain 121666 chr11 135006516 + 124272728 124274050 SVA_C 1631 - 4 1627 30492 516 0 296 794 0 5 12 chain 30862 chr11 135006516 + 124298317 124298735 MLT2A1 477 - 0 458 82749 37 19 59 177 4 6 18 0 1 9 7 4 147 chain 47855 chr11 135006516 + 124329229 124329877 LTR12 884 + 1 884 60585 134 1 135 106 2 0 64 14 15 151 1 103 175 chain 57828 chr11 135006516 + 124357810 124358445 L1PA3long 6157 - 971 1606 54022 635 chain 87644 chr11 135006516 + 124358445 124359411 L1PA3long 6157 + 5191 6157 40517 966 chain 28385 chr11 135006516 + 124375166 124375470 L1PA2 6032 - 6 310 91640 304 chain 75846 chr11 135006516 + 124375476 124376318 L1P1 4361 + 3488 4328 45575 663 1 0 154 1 0 23 chain 81149 chr11 135006516 + 124377147 124379303 L1PA13 3608 - 117 3522 43113 22 2 1 20 6 6 46 2 0 10 6 5 43 9 5 60 2 0 75 0 10 29 1 0 19 742 2045 83 19 27 111 0 1 175 1 0 68 2 0 95 3 1 19 21 17 13 7 6 16 6 3 6 1 0 9 1 0 17 1 0 12 1 0 70 19 0 55 2 0 73 2 0 8 17 9 20 7 4 14 4 3 22 5 2 23 10 4 19 1 0 4 chain 134509 chr11 135006516 + 124422416 124423879 L1PA3long 6157 - 0 1463 27110 1463 chain 112347 chr11 135006516 + 124423885 124425161 L1P1 4361 + 3040 4317 33576 205 0 3 903 1 0 154 1 0 12 chain 28775 chr11 135006516 + 124425585 124425964 L1PA8 5853 - 3 375 89995 90 1 0 16 2 1 47 1 0 13 6 5 68 2 0 44 1 0 88 chain 68321 chr11 135006516 + 124431412 124432169 L1PA3long 6157 - 5 763 49115 604 0 1 153 chain 40934 chr11 135006516 + 124434691 124435182 MER9a1 513 - 0 513 67992 246 1 23 244 chain 103269 chr11 135006516 + 124456853 124458391 L1PB1 5432 + 3967 5427 35931 49 0 2 19 1 3 67 1 0 46 0 5 5 1 2 367 1 3 41 0 1 131 1 0 106 0 2 66 0 1 89 0 2 129 3 2 10 70 9 14 28 22 8 2 0 51 1 0 17 1 0 45 1 0 15 3 1 8 2 1 5 8 0 16 2 0 5 1 0 13 3 1 24 2 1 20 1 0 13 1 0 18 2 0 5 chain 24350 chr11 135006516 + 124472475 124472759 AluSg7 307 - 14 299 108376 13 0 1 271 chain 8274 chr11 135006516 + 124506354 124506444 5S 121 + 0 90 169545 90 chain 22683 chr11 135006516 + 124515211 124515496 AluSp 311 - 13 311 117146 48 0 1 9 14 26 214 chain 109556 chr11 135006516 + 124554454 124555975 THE1C-int 1605 + 0 1600 34306 12 4 3 70 13 68 176 13 19 97 0 7 54 0 1 128 5 7 117 12 6 238 9 11 117 34 47 422 chain 15155 chr11 135006516 + 124555980 124556271 THE1C 375 + 0 347 140899 79 6 7 20 11 55 23 57 68 95 chain 3654 chr11 135006516 + 124558733 124558812 MADE1 96 - 1 96 212715 32 23 39 24 chain 6799 chr11 135006516 + 124571805 124571890 L1PA16 3655 - 1559 1644 178962 85 chain 70395 chr11 135006516 + 124574449 124575232 SVA_D 2077 + 1236 2065 48218 103 0 50 457 4 0 219 chain 31390 chr11 135006516 + 124582436 124582846 Tigger3c 601 - 60 462 81838 40 1 0 53 3 5 260 10 1 43 chain 13502 chr11 135006516 + 124625152 124625301 L1PA3long 6157 + 6008 6157 146356 149 chain 23696 chr11 135006516 + 124646205 124646482 AluSp 311 - 23 301 112053 74 0 1 203 chain 8351 chr11 135006516 + 124673116 124673215 AluSp 311 + 183 282 169113 99 chain 83767 chr11 135006516 + 124675829 124677329 Charlie3 2679 + 19 1238 42001 15 1 0 59 0 3 6 36 8 157 32 92 343 1 0 44 322 6 177 2 3 88 8 9 209 chain 35708 chr11 135006516 + 124694356 124694880 MLT2A2 560 - 0 560 75262 21 5 6 43 0 1 76 3 14 47 20 22 52 0 22 48 13 12 196 chain 109137 chr11 135006516 + 124694880 124696282 HERVL-int 5654 - 0 1409 34405 200 0 1 20 4 0 46 21 24 176 0 1 163 0 1 205 2 1 16 0 2 427 0 4 122 chain 4610 chr11 135006516 + 124771643 124771699 MER90a 614 - 0 56 199514 56 chain 4510 chr11 135006516 + 124774978 124775030 MLT2A2 560 - 0 52 200679 52 chain 444620 chr11 135006516 + 124775622 124782925 HERVL-int 5654 - 0 5625 8916 32 1 0 263 0 9 76 0 4 454 0 1 61 0 1 658 1 3 455 0 1 30 0 1 85 0 3 235 1 4 173 10 26 218 0 1 523 0 1 179 0 8 123 1731 0 119 0 2 209 0 1 212 0 1 85 9 1 11 3 0 156 4 11 13 3 0 151 0 1 39 0 1 97 0 1 103 0 1 360 9 10 407 0 1 4 chain 149472 chr11 135006516 + 124779258 124780931 L1PA4 6152 - 9 1685 24692 26 0 2 1419 0 1 228 chain 35201 chr11 135006516 + 124798420 124798877 MER4A1 472 + 0 472 75918 50 0 1 112 6 0 62 7 27 220 chain 97244 chr11 135006516 + 124817728 124818935 L1P2 5180 + 2016 3240 37499 99 2 0 23 0 1 188 1 0 459 0 4 64 0 3 162 1 0 83 0 13 125 chain 9638 chr11 135006516 + 124818936 124819046 L1PA7 6471 + 6359 6469 162405 110 chain 25148 chr11 135006516 + 124820287 124820619 HSMAR1 1287 - 944 1287 104012 178 1 6 12 0 4 20 0 1 95 0 1 26 chain 9210 chr11 135006516 + 124830151 124830249 AluYf4 310 + 212 310 164506 98 chain 528328 chr11 135006516 + 124832549 124838685 L1PA6 6164 - 2 6164 4372 143 16 15 296 0 8 784 0 1 472 3 0 69 0 4 91 0 1 1088 0 1 4 1 2 782 0 4 5 0 2 62 6 0 101 0 1 309 0 3 165 0 3 310 0 5 102 0 1 578 0 1 239 2 1 410 0 2 29 1 0 68 chain 24814 chr11 135006516 + 124841098 124841387 L1P2 5180 + 909 1201 105809 171 0 3 118 chain 26770 chr11 135006516 + 124880568 124880954 L1PA16 3655 - 776 1166 97089 126 12 16 58 5 4 95 7 8 83 chain 113373 chr11 135006516 + 124897013 124898711 L1PB2 3958 - 123 1750 33260 60 1 0 10 21 19 64 10 9 56 1 0 22 0 2 46 2 1 6 1 0 88 4 0 14 2 0 133 2 0 94 2 1 286 1 0 56 43 18 71 1 0 4 0 1 34 6 5 243 33 7 37 8 0 188 11 15 37 chain 448691 chr11 135006516 + 124899199 124904758 HERVL-int 5654 - 9 5654 8797 323 0 1 25 0 1 316 2 1 67 0 12 27 0 4 96 1 7 259 10 22 55 9 15 127 4 0 194 0 2 629 0 1 29 1 4 79 0 11 410 0 12 95 2 1 505 0 1 132 0 4 194 0 1 94 0 1 405 0 1 85 10 2 9 3 0 157 4 11 13 3 0 41 6 3 107 0 1 39 0 1 97 1 2 102 0 1 664 0 1 112 3 21 13 chain 29450 chr11 135006516 + 124913103 124913412 AluYa5 310 - 1 310 86846 309 chain 82992 chr11 135006516 + 124915190 124916238 MER11C 1089 + 0 1064 42340 242 4 13 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 10 9 135 chain 132960 chr11 135006516 + 124959209 124960750 LTR12C 1709 + 0 1709 27430 120 1 0 145 1 2 424 0 159 261 1 0 6 2 0 107 0 4 107 0 8 366 chain 5017 chr11 135006516 + 124976471 124976558 L1ME3A 1206 + 625 708 194958 53 14 10 20 chain 77892 chr11 135006516 + 125000916 125001786 L1PA5 6144 - 0 873 44570 566 1 0 283 0 4 20 chain 23607 chr11 135006516 + 125048132 125048418 AluSp 311 + 7 294 112537 256 0 1 30 chain 26564 chr11 135006516 + 125053094 125053375 AluYb8 318 - 1 282 97791 281 chain 3208 chr11 135006516 + 125098099 125098139 MER3 215 + 66 107 220760 18 0 1 22 chain 22954 chr11 135006516 + 125111475 125111743 AluSg 306 + 5 273 115832 268 chain 18894 chr11 135006516 + 125191243 125191510 MER2 342 - 64 340 130381 76 0 3 88 7 8 17 4 9 75 chain 5847 chr11 135006516 + 125191540 125191612 MER58A 224 - 110 183 186717 15 0 1 57 chain 12170 chr11 135006516 + 125231468 125231605 L1PA5 6144 - 9 146 151536 137 chain 8906 chr11 135006516 + 125233705 125233852 MER63A 208 - 1 132 166112 37 27 11 83 chain 14089 chr11 135006516 + 125247544 125247795 MER30 238 - 0 238 144264 104 28 18 5 3 0 67 18 0 10 0 18 16 chain 7244 chr11 135006516 + 125383612 125383734 LTR48 738 + 566 689 175806 47 22 24 45 1 0 7 chain 5404 chr11 135006516 + 125389321 125389389 LTR1C 686 - 578 648 190945 27 0 2 41 chain 5602 chr11 135006516 + 125396082 125396170 LTR48 738 + 189 275 189059 9 1 0 29 6 5 43 chain 565020 chr11 135006516 + 125406505 125412536 L1HS 6032 + 2 6032 205 727 3 0 2408 0 2 2893 chain 51957 chr11 135006516 + 125418899 125419660 HUERS-P3b-int 2065 - 1370 2049 57644 114 3 0 267 83 8 202 1 0 5 0 1 4 4 0 78 chain 187926 chr11 135006516 + 125429031 125432307 MER57-int 2662 + 108 2662 20248 118 5 6 20 314 0 59 2 0 263 0 6 234 2 0 149 314 0 129 4 0 215 1 4 72 11 3 20 2 0 151 1 0 149 5 4 130 18 1 13 0 2 53 3 0 413 8 7 95 18 12 68 48 7 6 2 0 20 27 22 24 1 0 6 15 10 26 3 0 31 2 0 6 chain 23885 chr11 135006516 + 125461123 125461406 AluSc5 308 - 21 308 110995 98 3 6 77 0 1 105 chain 6324 chr11 135006516 + 125477439 125477526 MER5A 189 + 52 135 182605 12 4 0 71 chain 5070 chr11 135006516 + 125482081 125482178 MER2 342 - 127 232 194421 24 23 32 13 1 0 36 chain 15295 chr11 135006516 + 125485321 125485567 MER2 342 + 7 277 140502 61 39 63 146 chain 4077 chr11 135006516 + 125519651 125519697 U2 167 + 7 53 206221 46 chain 9851 chr11 135006516 + 125523400 125523555 L1MA5A 2387 - 374 547 161339 58 14 23 13 0 3 18 0 7 25 1 0 26 chain 43759 chr11 135006516 + 125557179 125557691 MER9a3 513 + 0 513 64499 13 0 1 63 0 2 366 2 0 68 chain 13629 chr11 135006516 + 125561569 125561788 L1PA8 5853 + 5630 5846 145861 52 1 0 4 5 4 4 0 1 45 6 5 12 7 6 83 chain 131265 chr11 135006516 + 125573655 125575162 LTR12C 1709 - 0 1709 27806 298 1 0 183 0 4 113 1 0 89 0 200 822 chain 472454 chr11 135006516 + 125575168 125581016 L1PA8 5853 + 45 5853 7957 5 2 0 21 2 0 11 1 0 13 49 13 185 27 15 313 9 13 254 0 3 666 0 1 468 7 6 44 0 1 68 0 1 335 0 4 240 0 1 156 1 0 105 0 2 405 1 0 138 1 0 254 0 1 1223 2 0 72 0 2 56 0 5 419 1 0 44 2 0 74 1 0 11 8 7 40 2 1 112 chain 551252 chr11 135006516 + 125581403 125587545 L1PA4 6152 - 0 6150 1282 6 0 2 105 0 1 1408 0 1 599 0 5 275 1 0 464 1 0 965 0 1 2318 chain 326172 chr11 135006516 + 125625520 125629681 L1P3 4156 + 0 4136 12339 203 0 9 29 21 20 61 1 0 215 1 0 53 16 18 74 6 7 38 9 12 76 0 1 25 0 1 12 4 5 386 0 6 302 10 11 201 11 6 103 9 12 743 0 1 30 0 2 486 39 0 378 1 0 469 17 12 100 2 0 7 2 1 21 chain 7375 chr11 135006516 + 125646085 125646194 L1PA8 5853 - 0 102 174938 25 8 0 6 2 4 58 1 0 9 chain 82438 chr11 135006516 + 125650582 125651507 L1PA5 6144 - 3098 4026 42568 676 0 2 243 0 1 6 chain 273397 chr11 135006516 + 125651507 125654577 L1PA5 6144 + 3052 6129 14999 625 2 0 664 0 4 898 0 13 808 8 0 65 chain 2944 chr11 135006516 + 125659777 125659810 L1MA4 2864 - 60 93 226234 33 chain 22389 chr11 135006516 + 125668370 125668747 THE1C 375 - 4 375 118544 22 1 0 61 14 15 42 55 45 35 5 9 142 chain 465699 chr11 135006516 + 125688164 125693982 L1PA8 5853 + 50 5853 8198 22 79 41 89 16 29 71 12 0 35 0 4 547 0 3 463 0 14 283 2 1 374 7 5 731 0 1 685 0 1 725 5 1 255 0 1 578 0 4 551 1 0 44 2 0 51 43 41 35 0 7 18 1 0 93 chain 20727 chr11 135006516 + 125709424 125709768 THE1B 368 - 0 368 124868 125 69 77 86 0 1 24 1 16 39 chain 153521 chr11 135006516 + 125717086 125719150 L1PA10 4194 + 1783 3815 24154 261 0 1 33 78 34 25 9 8 471 19 22 16 21 10 12 4 8 13 0 4 119 1 0 364 0 4 416 0 4 40 0 4 82 0 2 75 1 0 4 chain 33006 chr11 135006516 + 125719944 125720449 MLT2A1 477 - 0 477 79207 33 88 59 178 4 6 30 3 0 100 0 2 69 chain 9689 chr11 135006516 + 125721610 125721814 L1MA2 4263 - 158 526 162147 33 1 2 12 22 15 68 21 19 34 0 172 13 chain 513825 chr11 135006516 + 125727253 125735802 L1PA5 6144 + 7 6132 5798 278 7 0 409 0 5 146 8 5 213 12 13 93 9 0 239 1 6 778 1 3 374 0 1 516 0 7 77 1 0 97 0 9 77 5 6 324 0 1 48 0 3 554 0 1 580 2497 0 106 0 51 349 0 1 245 0 5 505 chain 164047 chr11 135006516 + 125732141 125734591 SVA_F 1814 + 10 1814 22804 681 0 1 192 1 0 52 0 1 10 522 15 39 1 0 10 1 0 166 131 0 10 1 0 419 7 1 207 chain 3992 chr11 135006516 + 125733078 125733127 SVA_F 1814 + 962 1011 141358 38 0 1 4 1 0 6 chain 2651 chr11 135006516 + 125733127 125733253 SVA_F 1814 + 962 1089 135009 43 0 1 83 chain 10963 chr11 135006516 + 125733817 125733945 SVA_F 1814 + 1001 1128 118294 4 1 0 123 chain 28783 chr11 135006516 + 125736499 125736806 AluYa5 310 - 3 310 89967 307 chain 117565 chr11 135006516 + 125737476 125739206 HERVIP10F-int 4088 - 1378 3101 31940 159 0 15 50 6 8 20 1 0 92 0 1 41 3 2 15 1 0 74 1 0 84 1 0 64 1 0 20 1 0 178 0 12 169 0 4 42 8 5 12 1 0 33 6 5 57 2 1 15 1 0 6 1 0 10 0 1 83 1 0 23 1 0 5 1 0 12 1 0 14 39 28 4 1 0 137 1 0 40 2 1 14 1 0 23 12 9 19 23 18 9 1 0 10 2 1 10 2 0 41 0 4 23 chain 28312 chr11 135006516 + 125740903 125741203 AluYa5 310 + 0 299 91896 132 1 0 167 chain 3780 chr11 135006516 + 125746487 125746528 L1PA8 5853 + 5523 5564 210659 41 chain 3381 chr11 135006516 + 125746529 125746573 L1PA8 5853 + 5564 5608 217448 44 chain 19334 chr11 135006516 + 125746575 125746824 L1PA8 5853 + 5608 5853 129130 69 3 2 9 1 0 52 2 1 19 1 0 93 chain 3098 chr11 135006516 + 125747428 125747462 MER20 218 + 184 218 222944 34 chain 22607 chr11 135006516 + 125750693 125750956 AluY 311 + 37 300 117556 263 chain 24904 chr11 135006516 + 125754222 125754508 AluYk4 311 + 0 286 105321 286 chain 30577 chr11 135006516 + 125799943 125800424 MER1A 529 + 1 507 83247 20 33 58 119 2 1 63 0 1 53 7 6 69 0 3 12 1 0 38 18 17 46 chain 5143 chr11 135006516 + 125803132 125803211 MER5A 189 + 51 129 193625 55 5 4 19 chain 41338 chr11 135006516 + 125803543 125804082 MER41A 554 + 0 554 67484 151 1 5 280 0 1 24 7 0 6 4 21 66 chain 22549 chr11 135006516 + 125841005 125841277 AluY 311 + 9 282 117807 114 3 4 155 chain 5988 chr11 135006516 + 125845528 125845671 MER5A 189 + 58 189 185349 55 59 47 29 chain 60073 chr11 135006516 + 125855592 125856336 L1PA6 6164 + 5386 6162 52790 440 1 2 62 0 18 95 2 0 11 4 6 18 0 16 93 1 0 7 2 0 8 chain 25174 chr11 135006516 + 125866319 125866618 AluSx1 309 + 8 306 103888 112 1 0 186 chain 22323 chr11 135006516 + 125914938 125915220 AluSc 308 - 29 308 118808 22 1 0 115 13 11 131 chain 53646 chr11 135006516 + 125977601 125978285 L1PA7 6471 + 5779 6469 56589 32 20 19 335 9 17 264 1 3 9 3 0 11 chain 20650 chr11 135006516 + 125995738 125995977 AluYk4 311 + 72 311 125134 239 chain 41326 chr11 135006516 + 126013262 126013787 L1PA8 5853 - 0 534 67505 85 0 19 5 1 0 51 6 1 13 1 0 71 2 0 46 6 5 238 chain 63085 chr11 135006516 + 126031537 126032246 L1PA5 6144 - 1 713 51409 10 1 3 133 0 1 565 chain 22931 chr11 135006516 + 126038658 126038957 THE1B 368 - 59 368 115958 118 4 0 19 5 4 109 0 15 44 chain 25726 chr11 135006516 + 126083961 126084264 AluY 311 + 0 299 101187 105 1 0 28 3 0 166 chain 23219 chr11 135006516 + 126093213 126093495 AluY 311 + 0 298 114603 45 0 1 20 0 1 65 0 1 106 0 2 30 0 11 16 chain 15910 chr11 135006516 + 126114949 126115188 7SLRNA 320 + 20 310 138629 40 9 1 24 4 61 95 6 8 61 chain 23378 chr11 135006516 + 126117478 126117761 AluSx3 311 + 6 291 113771 102 1 2 16 0 1 164 chain 38294 chr11 135006516 + 126184234 126184862 L1PB1 5432 + 4815 5422 71716 288 14 11 24 1 0 6 1 0 12 2 0 3 2 0 9 2 0 51 1 0 18 1 0 47 1 0 4 52 47 11 2 0 24 1 0 22 14 15 15 chain 4574 chr11 135006516 + 126184903 126184981 L1PA15 4387 + 4186 4259 199953 20 4 0 11 6 5 37 chain 4063 chr11 135006516 + 126281567 126281684 MLT1E2 623 - 244 357 206443 43 55 50 13 0 1 6 chain 4718 chr11 135006516 + 126341973 126342131 MER53 195 - 12 162 198305 40 16 15 15 60 53 27 chain 5097 chr11 135006516 + 126364396 126364472 MER96B 391 - 231 306 194118 31 2 1 43 chain 20196 chr11 135006516 + 126487810 126488315 MSTA 426 + 1 387 126537 158 14 10 35 5 0 7 0 7 20 21 20 33 171 55 41 chain 119902 chr11 135006516 + 126519160 126520707 THE1A-int 1579 - 7 1579 31090 287 5 9 623 0 3 55 25 26 470 1 11 60 0 7 21 chain 29883 chr11 135006516 + 126676575 126676956 L1PA8 5853 - 0 376 85151 93 1 0 19 2 1 31 0 1 27 1 0 73 2 0 46 1 0 85 chain 36532 chr11 135006516 + 126683686 126684310 L1PA11 4918 + 4049 4629 74195 264 0 4 76 2 1 13 2 0 67 2 0 17 9 0 16 22 13 10 13 9 15 1 0 13 64 44 18 chain 33070 chr11 135006516 + 126694367 126694990 MER4A 717 - 18 717 79097 34 128 197 59 0 1 11 1 2 56 3 14 101 12 11 55 6 1 28 1 0 44 4 5 80 chain 38877 chr11 135006516 + 126713480 126714023 MER41A 554 + 1 554 70903 60 39 44 233 0 3 56 7 9 148 chain 6454 chr11 135006516 + 126804558 126804642 L1MC1 2226 + 1309 1393 181606 84 chain 29024 chr11 135006516 + 126822293 126822663 L1PA7 6471 - 812 1196 88886 42 0 3 138 7 17 117 1 2 65 chain 60196 chr11 135006516 + 126822671 126823388 L1PA7 6471 + 5752 6468 52730 534 0 1 131 6 7 32 3 0 11 chain 3196 chr11 135006516 + 126906523 126906573 MIRc 230 - 120 171 221005 13 4 5 33 chain 8368 chr11 135006516 + 126927562 126927689 MER20 218 - 62 187 169035 66 17 15 44 chain 5290 chr11 135006516 + 126930243 126930312 Tigger2b_Pri 1066 + 813 918 192125 12 0 36 57 chain 59632 chr11 135006516 + 126952479 126953187 L1PA7 6471 - 20 728 53034 708 chain 19941 chr11 135006516 + 126953187 126953447 L1P3 4156 + 915 1175 127326 147 3 4 46 2 1 62 chain 209473 chr11 135006516 + 126958642 126961714 L1PB1 5432 + 2517 5430 18526 70 1 3 346 7 60 737 33 5 291 2 1 189 8 9 55 0 1 205 0 1 15 10 8 37 1 0 75 1 0 343 4 0 15 0 1 119 1 2 9 151 0 24 9 6 14 20 14 48 2 1 12 6 5 43 1 0 15 2 0 6 14 7 17 25 20 24 1 0 22 1 0 12 1 0 11 1 0 10 1 0 5 chain 28778 chr11 135006516 + 126964981 126965416 L1PA16 3655 + 3112 3554 89989 89 1 0 52 16 16 24 2 0 53 21 25 44 0 4 6 0 1 78 0 1 49 chain 6804 chr11 135006516 + 127038733 127038817 Tigger2 2703 - 135 224 178930 69 0 5 15 chain 89624 chr11 135006516 + 127038884 127040128 L1PA8 5853 - 0 1265 39773 48 0 8 37 7 4 15 2 1 23 40 39 68 6 5 41 1 0 79 5 6 388 6 8 37 0 6 28 22 32 257 0 1 134 chain 3442 chr11 135006516 + 127045236 127045289 MER21C 908 + 38 92 216341 27 4 5 22 chain 176711 chr11 135006516 + 127156995 127158900 L1PA2 6032 - 0 1905 21279 1905 chain 15171 chr11 135006516 + 127166867 127167054 THE1B-int 1605 + 0 187 140853 187 chain 18599 chr11 135006516 + 127168758 127169119 THE1B 368 + 0 368 131232 108 13 15 36 57 55 14 13 21 57 7 6 56 chain 16132 chr11 135006516 + 127170964 127171300 L1PB1 5432 + 5121 5424 137960 13 1 0 12 1 0 12 15 9 53 2 1 16 10 9 35 1 0 15 15 2 29 2 0 5 1 0 14 2 0 26 1 0 19 1 0 13 2 1 15 1 0 4 chain 23159 chr11 135006516 + 127181181 127181459 AluY 311 + 11 296 114858 15 1 7 99 0 1 163 chain 26550 chr11 135006516 + 127187886 127188240 THE1A 353 - 0 353 97838 151 1 0 79 14 13 26 0 1 83 chain 100676 chr11 135006516 + 127189921 127191628 THE1B-int 1605 - 5 1577 36591 42 1 0 12 14 16 36 0 1 55 4 3 14 13 12 56 168 17 36 3 0 205 12 15 323 33 34 16 0 1 9 14 16 7 1 0 213 1 65 177 12 15 51 54 0 125 chain 9451 chr11 135006516 + 127190206 127190317 THE1B-int 1605 - 1449 1560 163310 111 chain 29324 chr11 135006516 + 127193161 127193471 AluYb9 318 + 0 310 87413 310 chain 24160 chr11 135006516 + 127204034 127204362 AluY 311 + 0 299 109426 87 5 0 143 25 1 68 chain 30558 chr11 135006516 + 127223707 127224025 AluYb9 318 + 0 318 83324 318 chain 542366 chr11 135006516 + 127233058 127239075 L1PA3long 6157 + 0 6152 2453 152 0 1 624 1 129 184 0 1 157 0 1 1940 1 0 733 2 1 61 0 5 2018 0 1 144 chain 16294 chr11 135006516 + 127264390 127264740 THE1B 368 + 0 341 137494 54 118 114 26 4 0 98 2 1 48 chain 51328 chr11 135006516 + 127266432 127267227 LTR12_ 688 + 7 680 58081 13 5 4 139 18 1 84 1 0 158 103 0 274 chain 60403 chr11 135006516 + 127285774 127286475 L1PA5 6144 - 0 702 52632 310 0 1 391 chain 60989 chr11 135006516 + 127300426 127301358 L1PA16 3655 - 31 944 52339 19 45 27 178 2 0 19 11 8 62 1 2 21 2 0 5 0 1 78 1 0 222 16 18 26 0 4 11 2 1 8 0 1 10 1 0 192 chain 3402 chr11 135006516 + 127317392 127317469 MIR 256 + 77 157 217025 33 25 28 19 chain 17903 chr11 135006516 + 127335137 127335518 MER57B2 428 + 0 424 133093 95 56 99 119 67 65 12 0 2 32 chain 26735 chr11 135006516 + 127349943 127350239 AluYd8 298 + 0 291 97204 111 1 0 3 4 0 177 chain 22710 chr11 135006516 + 127356316 127356585 AluSp 311 + 10 279 117032 269 chain 146624 chr11 135006516 + 127381019 127382790 L1PA7 6471 - 16 1814 25067 174 0 8 9 8 0 37 1 2 532 7 12 63 0 4 229 0 9 571 0 2 127 0 6 13 chain 26099 chr11 135006516 + 127384648 127384952 AluY 311 + 0 311 99621 123 0 7 181 chain 317909 chr11 135006516 + 127414115 127417961 HERVH-int 3825 - 0 3825 12678 927 1 9 387 0 1 307 0 1 871 0 6 376 20 0 161 0 1 13 0 2 6 0 1 43 21 0 16 43 0 27 2 40 12 1 14 24 1 0 10 1 0 37 8 3 192 6 5 333 chain 5971 chr11 135006516 + 127426239 127426302 AluYk11 308 + 10 73 185507 63 chain 27055 chr11 135006516 + 127426767 127427125 L1PA8 5853 + 5502 5853 96094 62 1 0 45 2 0 73 1 0 5 4 3 50 2 1 106 1 0 6 chain 66305 chr11 135006516 + 127531066 127532167 L1PB1 5432 - 8 1063 49947 4 1 0 16 1 0 13 1 0 21 11 10 14 1 0 14 40 29 7 3 0 16 1 0 43 1 0 14 13 11 42 3 1 11 16 11 13 1 0 20 3 0 5 7 6 51 1 0 5 9 10 22 9 10 9 0 7 298 1 0 5 20 2 198 1 0 4 0 1 112 chain 27963 chr11 135006516 + 127576499 127576842 L1PA6 6164 - 4 348 93129 202 0 1 141 chain 23893 chr11 135006516 + 127597413 127597695 AluSp 311 + 11 301 110939 189 0 8 93 chain 45052 chr11 135006516 + 127621537 127622356 L1PA11 4918 - 289 1027 62994 18 19 13 4 1 0 11 10 5 11 8 6 7 1 0 15 44 31 18 0 2 14 2 0 62 7 6 12 10 9 42 1 2 16 2 0 98 7 1 231 45 1 103 chain 28864 chr11 135006516 + 127624642 127625036 L1PB2 3958 - 120 508 89606 63 1 0 22 2 0 74 1 0 62 1 0 79 1 0 88 chain 3797 chr11 135006516 + 127633484 127633537 MADE1 96 - 26 96 210426 8 0 16 22 0 1 23 chain 27660 chr11 135006516 + 127638818 127639213 LTR7 482 - 5 482 94180 153 0 10 37 0 31 21 0 1 109 44 84 31 chain 321830 chr11 135006516 + 127640458 127644393 HERVH-int 3825 - 0 3825 12528 836 0 4 322 0 3 362 0 1 103 0 1 1014 0 2 398 0 1 13 0 2 6 0 1 64 2 1 15 6 7 13 1 0 18 4 21 13 69 0 24 65 0 10 1 0 37 8 3 196 2 1 333 chain 4010 chr11 135006516 + 127643742 127643806 HERVH-int 3825 - 3245 3364 189311 10 1 0 36 9 65 8 chain 26712 chr11 135006516 + 127644407 127644790 LTR7 482 - 12 482 97285 103 1 2 41 0 10 6 0 3 39 10 42 80 0 3 26 8 46 69 chain 556078 chr11 135006516 + 127646597 127652613 L1PA2 6032 - 7 6030 715 1859 0 2 1340 0 1 1708 0 1 72 0 3 1037 chain 2964 chr11 135006516 + 127668351 127668386 HSMAR1 1287 + 1252 1287 225827 35 chain 29170 chr11 135006516 + 127694352 127694661 AluYg6 310 + 0 309 88200 309 chain 45257 chr11 135006516 + 127732672 127733233 L1PA6 6164 - 2 552 62760 6 4 0 163 5 0 167 3 1 213 chain 347536 chr11 135006516 + 127738562 127742392 L1PA3long 6157 - 0 3818 11682 6 3 0 2180 9 0 1632 chain 6214 chr11 135006516 + 127742464 127742537 L1P1 4361 + 3649 3722 183452 73 chain 108659 chr11 135006516 + 127754774 127756245 THE1B-int 1605 - 7 1586 34523 72 1 0 127 1 0 223 1 0 4 0 1 52 6 91 287 26 20 6 0 7 29 1 0 4 13 14 56 1 0 149 1 26 411 chain 47927 chr11 135006516 + 127758019 127758630 PABL_B 668 - 30 668 60537 171 0 24 102 0 1 47 5 6 6 1 0 133 0 2 146 chain 969 chr11 135006516 + 127768084 127768155 LTR12C 1709 - 600 872 212638 17 15 0 7 0 216 32 chain 6583 chr11 135006516 + 127768238 127768352 LTR12C 1709 - 514 712 180592 19 24 108 71 chain 317516 chr11 135006516 + 127779450 127783711 L1PB1 5432 - 12 4257 12699 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 14 8 0 14 0 5 7 8 0 6 1 0 44 1 0 18 2 1 51 2 0 8 27 21 24 3 0 9 1 2 288 4 0 8 0 3 180 4 0 51 0 1 48 0 1 37 1 2 47 0 2 107 1 2 155 0 4 354 4 5 10 10 4 71 3 5 104 0 2 70 0 3 374 0 1 143 1 0 201 3 1 237 0 5 221 24 41 337 0 2 92 10 0 277 0 1 185 0 1 10 9 1 44 0 1 134 0 2 53 chain 175280 chr11 135006516 + 127786327 127788580 L1PA8A 6298 + 3905 6167 21423 63 0 1 21 8 3 151 0 4 69 0 1 603 1 0 522 0 5 121 0 1 17 1 0 70 0 1 10 0 2 58 4 5 35 6 5 303 11 1 7 0 10 136 0 1 36 chain 60688 chr11 135006516 + 127811964 127812771 L1PA7 6471 + 5547 6455 52478 72 2 0 137 0 1 27 0 159 67 0 2 383 69 10 50 chain 26209 chr11 135006516 + 127825451 127825801 THE1B 368 + 0 366 99167 44 0 15 109 1 0 4 2 1 27 0 4 89 1 0 73 chain 107551 chr11 135006516 + 127845732 127846932 L1PA3long 6157 - 0 1205 34836 180 1 7 1014 1 0 4 chain 322396 chr11 135006516 + 127877361 127881967 L1PA11 4918 + 13 4504 12505 29 2 0 29 11 8 21 0 1 9 6 5 15 11 9 41 1 0 33 9 6 30 8 10 142 2 3 93 14 19 338 2 3 121 0 3 61 6 5 302 1 0 240 0 1 14 1 0 123 3 11 77 10 7 66 12 18 144 5 6 4 1 0 189 0 1 206 6 4 174 10 9 175 0 3 529 2 0 572 146 10 47 22 23 53 15 18 6 3 0 135 1 2 42 0 9 27 12 14 17 1 0 70 1 0 11 1 2 64 2 0 16 0 2 14 chain 3334 chr11 135006516 + 127901086 127901122 MLT2A1 477 - 207 243 218347 36 chain 21938 chr11 135006516 + 127937086 127937430 THE1B 368 - 0 368 120470 75 1 0 29 0 1 20 35 45 26 7 6 111 0 15 40 chain 20995 chr11 135006516 + 127938995 127939334 THE1B 368 - 0 368 123936 75 1 0 50 38 48 23 17 16 67 0 6 28 0 15 40 chain 183286 chr11 135006516 + 127945987 127948018 L1PA4 6152 - 1 2031 20650 138 1 0 1892 chain 4779 chr11 135006516 + 127948018 127948072 L1PA4 6152 - 6098 6152 194684 54 chain 445862 chr11 135006516 + 127977753 127983459 L1PA6 6164 + 792 6162 8878 111 0 4 204 1 2 48 0 3 229 5 0 53 1 0 10 0 1 67 12 4 93 0 4 709 46 5 41 0 1 218 0 1 191 0 3 163 1 17 168 0 1 80 0 1 4 1 0 37 0 3 424 6 0 203 0 1 405 0 2 59 0 4 196 9 4 82 1 0 352 7 0 317 1 5 467 308 0 367 3 0 6 chain 24590 chr11 135006516 + 127985320 127985619 L1P3 4156 - 1287 1582 107041 177 5 1 117 chain 38951 chr11 135006516 + 127993663 127994189 MLT2A2 560 - 0 543 70799 125 1 2 16 0 11 199 9 13 131 4 5 41 chain 9862 chr11 135006516 + 127994301 127994428 L1MB8 1703 + 1433 1563 161274 49 0 3 78 chain 547038 chr11 135006516 + 128009952 128016107 L1PA4 6152 + 7 6152 1824 570 1 0 121 14 0 1988 0 1 1669 0 4 1018 1 0 660 0 1 113 chain 15026 chr11 135006516 + 128055923 128056128 L1PA6 6164 + 5037 5242 141249 107 3 2 23 0 2 67 1 0 4 chain 41346 chr11 135006516 + 128056128 128056629 L1PA6 6164 + 5243 5748 67476 75 0 4 426 chain 27540 chr11 135006516 + 128056629 128056982 L1PA6 6164 + 5812 6162 94532 345 3 0 5 chain 17560 chr11 135006516 + 128084584 128084967 LTR12C 1709 - 723 1059 134101 25 41 0 6 2 1 26 42 1 24 41 0 66 1 0 19 4 82 86 chain 2282 chr11 135006516 + 128084750 128084777 LTR12C 1709 - 687 714 222409 27 chain 114064 chr11 135006516 + 128106802 128108242 LTR12C 1709 + 0 1709 33085 292 5 6 40 10 53 73 4 5 57 0 1 82 2 3 70 3 119 31 6 5 44 0 4 223 1 0 8 4 2 103 3 7 168 0 102 211 chain 17562 chr11 135006516 + 128110164 128110360 AluY 311 + 105 301 134091 196 chain 20456 chr11 135006516 + 128121408 128121765 THE1B 368 + 0 368 125742 64 0 3 80 88 96 125 chain 10861 chr11 135006516 + 128122920 128123108 MER30 238 - 0 207 156737 39 2 0 32 6 0 9 0 6 14 21 42 65 chain 20145 chr11 135006516 + 128152601 128152971 L1PB1 5432 + 5085 5427 126691 17 1 0 12 3 0 24 1 0 9 1 0 9 2 0 3 2 0 10 3 1 50 2 1 16 1 0 44 1 0 16 3 0 27 27 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 13216 chr11 135006516 + 128188363 128188523 L1PB1 5432 - 366 526 147405 160 chain 59841 chr11 135006516 + 128246941 128247806 L1PA8 5853 - 4 844 52907 80 17 33 47 1 0 10 2 1 70 2 0 5 56 19 22 1 0 475 7 8 70 chain 26853 chr11 135006516 + 128254995 128255366 MLT2A1 477 - 105 477 96800 6 3 0 67 0 5 89 8 9 16 0 1 8 3 0 171 chain 15368 chr11 135006516 + 128267958 128268214 Tigger3a 397 + 58 374 140298 17 15 64 10 1 11 166 13 14 34 chain 5451 chr11 135006516 + 128289136 128289349 MLT1H 522 - 244 462 190519 26 93 101 37 1 0 4 27 25 25 chain 104690 chr11 135006516 + 128296151 128297378 L1PA6 6164 - 4 1253 35567 488 6 25 405 0 1 123 0 2 205 chain 31888 chr11 135006516 + 128297973 128298402 L1PA8 5853 - 6 430 81029 87 1 0 19 2 1 47 1 0 78 9 7 44 1 0 81 0 1 59 chain 174292 chr11 135006516 + 128314293 128316352 L1PA6 6164 + 4096 6159 21564 490 1 0 18 0 1 67 13 14 27 7 4 516 1 0 5 3 4 72 0 5 349 0 1 490 chain 29382 chr11 135006516 + 128320510 128320854 L1PA7 6471 + 6108 6453 87159 171 0 1 173 chain 28305 chr11 135006516 + 128470792 128471096 AluYa5 310 + 0 302 91923 97 2 0 205 chain 12527 chr11 135006516 + 128518090 128518228 L1PA5 6144 + 5990 6128 150127 138 chain 22000 chr11 135006516 + 128528352 128528717 MER57A1 433 + 2 375 120230 26 15 18 126 0 4 22 0 11 34 1 2 31 0 1 5 11 0 18 27 26 49 chain 8446 chr11 135006516 + 128547366 128547472 L1PA8 5853 + 5748 5853 168588 12 1 0 93 chain 4906 chr11 135006516 + 128612470 128612528 MER3 215 - 74 132 196200 58 chain 21475 chr11 135006516 + 128650246 128650498 AluSp 311 + 24 290 122233 42 0 14 210 chain 25156 chr11 135006516 + 128666587 128666879 AluSq10 312 + 0 292 103981 292 chain 27031 chr11 135006516 + 128696671 128697037 THE1C 375 + 7 375 96181 122 1 2 55 7 8 13 9 10 133 1 0 25 chain 24140 chr11 135006516 + 128853279 128853549 L1PA5 6144 + 5874 6144 109521 270 chain 32907 chr11 135006516 + 128859461 128859850 L1PA7 6471 - 5 393 79358 152 1 0 40 0 1 183 1 0 12 chain 79743 chr11 135006516 + 128868561 128869611 MER11B 1079 + 0 1049 43711 225 0 5 124 3 6 67 2 1 282 9 8 16 27 17 16 0 2 110 0 1 169 chain 46996 chr11 135006516 + 128879805 128880531 L1PA11 4918 - 351 1080 61215 13 1 0 13 50 37 16 1 0 13 2 0 43 10 27 11 8 7 62 1 0 8 1 5 365 2 3 20 1 0 4 5 6 76 chain 9238 chr11 135006516 + 128914275 128914403 MER85 139 - 0 139 164361 23 2 0 6 1 14 96 chain 73024 chr11 135006516 + 128920549 128921407 L1PA7 6471 - 10 875 47015 162 1 3 159 1 0 513 0 6 22 chain 56895 chr11 135006516 + 128971517 128972367 L1PA13 3608 + 166 989 54597 11 3 0 24 28 17 71 8 6 120 1 0 13 2 1 16 2 0 16 6 2 18 1 0 19 3 1 13 4 2 18 1 0 44 1 6 47 2 0 358 chain 80533 chr11 135006516 + 128998496 128999567 SVA_B 1603 + 52 1226 43376 17 14 1 389 0 116 131 0 40 43 120 0 90 4 0 14 0 83 97 1 2 151 chain 25783 chr11 135006516 + 129009359 129009725 THE1B 368 + 0 368 100945 94 4 0 9 1 0 66 1 0 4 0 3 4 1 0 4 0 1 7 2 0 28 1 0 86 5 13 49 chain 27174 chr11 135006516 + 129011182 129011524 L1PA6 6164 + 5821 6162 95683 76 6 5 260 chain 513737 chr11 135006516 + 129025672 129032200 L1PA7 6471 + 0 6466 5808 248 17 1 96 0 1 403 10 25 519 6 7 78 0 1 720 4 6 32 1 0 22 1 5 403 5 11 63 14 8 37 0 1 19 4 20 24 1 0 233 1 0 117 16 21 175 4 5 26 6 7 120 0 4 45 1 0 243 17 2 81 3 0 352 32 0 30 0 2 502 0 1 22 61 5 316 1 4 221 0 1 153 3 1 186 0 5 70 0 2 7 0 1 86 0 2 517 0 1 136 6 2 12 chain 179344 chr11 135006516 + 129040121 129042345 L1PA8A 6298 - 7 2240 21047 85 9 4 368 0 11 251 0 2 75 11 10 15 2 1 97 1 0 290 1 0 7 0 1 265 0 1 330 0 2 404 0 1 13 chain 43791 chr11 135006516 + 129042961 129043548 L1P3 4156 + 3553 4136 64464 15 0 3 40 8 13 192 0 3 10 12 0 278 2 0 7 2 1 21 chain 543519 chr11 135006516 + 129043826 129049849 L1PA3long 6157 + 2 6157 2264 150 0 1 628 1 129 1086 0 1 273 0 5 421 0 1 1412 4 0 2048 chain 55224 chr11 135006516 + 129054886 129055507 L1PA4 6152 + 5530 6152 55570 508 0 1 113 chain 43421 chr11 135006516 + 129056439 129057115 L1MA2 4263 + 3432 4105 64906 75 0 13 64 5 1 41 5 6 14 17 16 146 3 0 14 1 2 33 1 0 101 9 7 93 15 8 39 chain 123256 chr11 135006516 + 129068627 129070185 THE1B-int 1605 + 0 1599 29958 413 1 0 19 0 25 106 0 1 117 0 1 24 0 1 259 5 6 64 0 1 367 1 0 135 8 21 39 chain 17514 chr11 135006516 + 129070191 129070554 THE1B 368 + 0 368 134226 108 32 34 35 73 77 52 7 6 56 chain 78430 chr11 135006516 + 129076649 129077594 L1PA7 6471 - 2 962 44304 12 3 0 456 0 16 357 0 4 9 3 5 35 3 0 27 1 0 39 chain 55652 chr11 135006516 + 129105491 129107116 L1PB1 5432 - 29 2428 55338 12 1 0 21 1 0 5 44 39 17 0 2 12 20 0 5 1 0 10 2 1 43 1 0 11 13 12 45 2 0 9 2 0 3 2 0 11 1 0 6 702 1510 84 2 0 67 0 5 333 1 0 136 chain 101226 chr11 135006516 + 129114389 129115503 L1PA3long 6157 + 5043 6156 36456 264 1 0 849 chain 10207 chr11 135006516 + 129179742 129179929 MSTB 430 - 243 430 159583 21 46 44 17 0 1 73 0 1 30 chain 64133 chr11 135006516 + 129180603 129181406 LTR12 884 + 0 865 50947 55 0 41 170 0 2 72 1 2 35 2 0 47 0 19 96 2 3 323 chain 23058 chr11 135006516 + 129197630 129198011 THE1D 372 - 0 369 115367 88 5 6 85 11 13 48 5 9 48 37 18 54 chain 5769 chr11 135006516 + 129204356 129204427 MSTD 398 + 3 77 187446 34 0 1 24 0 2 13 chain 48473 chr11 135006516 + 129204650 129205283 L1PA8 5853 - 0 780 60134 44 0 1 47 2 1 19 2 1 15 0 1 22 2 4 9 2 1 9 1 0 71 2 0 44 1 0 77 0 150 264 chain 5307 chr11 135006516 + 129206448 129206525 MADE1 96 - 0 93 191940 40 3 19 34 chain 500198 chr11 135006516 + 129209223 129214797 L1PA3long 6157 - 410 6126 6827 2902 0 1 570 0 5 272 0 1 1090 10 138 26 0 1 257 3 1 328 1 2 79 0 7 36 chain 23626 chr11 135006516 + 129243651 129243933 AluSg4 309 + 15 297 112433 32 0 1 75 1 0 174 chain 17550 chr11 135006516 + 129309175 129309382 L1PA7 6471 - 1 207 134127 151 1 0 55 chain 10465 chr11 135006516 + 129313075 129313209 L1PA7 6471 - 5 138 158410 16 0 1 111 2 0 5 chain 29168 chr11 135006516 + 129332793 129333099 AluYa5 310 - 4 310 88212 306 chain 532253 chr11 135006516 + 129336648 129343392 L1PA7 6471 + 3 6470 3934 397 13 14 264 2 0 323 1 11 330 0 1 129 0 1 141 0 1 475 2 6 544 0 1 742 0 1 314 0 1 823 0 2 36 12 11 7 0 1 89 0 4 949 0 3 20 309 2 52 0 2 770 chain 504353 chr11 135006516 + 129363379 129369492 L1PA6 6164 + 0 6160 6578 212 0 1 34 1 7 162 1 0 32 28 5 116 1 0 107 0 1 128 1 18 264 1 4 163 1 0 202 2 0 5 10 9 863 8 9 840 2 0 7 0 1 467 0 1 35 0 1 1019 0 1 1319 0 45 82 chain 274595 chr11 135006516 + 129378807 129381923 L1PA5 6144 - 2 3120 14943 144 1 7 6 6 0 94 1 0 118 0 1 399 7 0 82 0 4 8 0 4 1738 0 1 512 chain 153571 chr11 135006516 + 129383985 129385962 L1PA8 5853 - 0 1977 24148 92 0 2 18 2 1 33 16 14 14 4 3 66 2 0 48 2 1 117 1 2 48 1 5 59 2 0 317 9 8 15 7 12 73 0 1 418 6 0 6 5 11 157 1 0 171 10 6 229 0 2 28 chain 25315 chr11 135006516 + 129397067 129397358 AluY 311 + 10 297 103142 122 0 1 154 5 0 10 chain 26137 chr11 135006516 + 129408859 129409204 THE1A 353 - 10 353 99456 233 2 1 24 7 6 79 chain 130508 chr11 135006516 + 129409204 129410786 THE1A-int 1579 - 0 1579 27961 661 1 0 134 3 1 202 5 6 33 1 0 542 chain 4454 chr11 135006516 + 129410786 129410863 THE1A 353 - 0 106 201300 25 8 37 44 chain 19884 chr11 135006516 + 129410864 129411112 THE1A 353 - 106 353 127536 145 1 0 102 chain 9707 chr11 135006516 + 129417415 129417561 MSTB 430 + 261 411 162048 31 1 0 15 9 14 90 chain 6016 chr11 135006516 + 129418271 129418343 LTR28 1034 + 0 72 185081 72 chain 33199 chr11 135006516 + 129433245 129434685 MLT2A1 477 - 0 477 78889 48 974 18 7 3 0 9 4 0 191 0 1 5 0 1 17 0 1 10 5 2 167 chain 31021 chr11 135006516 + 129442375 129442732 L1PA6 6164 - 12 369 82476 357 chain 303864 chr11 135006516 + 129468642 129473193 L1PA8 5853 + 134 5853 13251 19 339 325 45 101 87 5 0 2 13 3 0 11 0 3 10 6 9 37 17 17 12 37 37 13 0 3 372 19 19 584 14 13 249 2 0 206 7 23 49 0 1 461 7 15 145 2 1 43 0 5 200 0 486 87 0 663 603 0 2 47 0 1 55 0 11 437 5 4 45 2 0 70 1 0 9 1 0 37 17 16 19 1 0 8 0 6 79 chain 22802 chr11 135006516 + 129503798 129504092 AluY 311 + 13 304 116565 65 8 1 44 1 3 149 0 2 27 chain 122817 chr11 135006516 + 129519801 129521228 L1PA5 6144 - 0 1440 30107 185 0 1 106 2 1 99 0 3 389 0 1 65 1 0 196 6 15 368 0 1 10 chain 27632 chr11 135006516 + 129530109 129530402 AluYd8 298 + 0 293 94260 293 chain 66882 chr11 135006516 + 129530439 129531295 L1PA10 4194 + 3261 4114 49691 102 13 9 315 5 6 253 0 4 126 4 0 38 chain 19922 chr11 135006516 + 129532771 129533097 L1PA13 3608 + 3136 3467 127393 23 5 4 110 2 0 53 10 9 12 8 10 30 1 0 9 2 0 34 1 13 5 2 0 19 chain 58708 chr11 135006516 + 129544902 129547518 L1PA15 4387 + 629 2469 53578 29 5 11 179 2 1 233 1761 980 44 15 0 8 0 15 321 0 1 4 1 0 14 chain 16078 chr11 135006516 + 129577511 129577714 MER107 203 - 0 200 138122 32 7 4 164 chain 537830 chr11 135006516 + 129582443 129588556 L1PA4 6152 + 2 6143 3177 112 0 1 568 0 3 151 1 2 397 0 1 278 0 12 1236 1 0 366 0 1 385 0 1 840 0 4 634 0 1 309 0 4 835 chain 231117 chr11 135006516 + 129623961 129626816 L1PA7 6471 + 3577 6461 17248 99 2 0 137 0 4 258 6 9 5 1 0 15 0 1 100 0 1 59 1 0 85 1 11 304 1 3 34 1 0 32 0 1 171 0 1 381 0 7 322 1 4 65 12 14 408 2 1 352 chain 24045 chr11 135006516 + 129634970 129635431 L1PB1 5432 + 4954 5383 110079 147 15 13 23 1 0 10 1 0 11 5 1 8 2 0 53 2 1 9 8 7 44 1 0 15 30 17 15 2 0 4 1 0 14 13 11 13 1 0 13 chain 26112 chr11 135006516 + 129636130 129636433 AluYk4 311 + 0 304 99570 96 0 1 207 chain 64763 chr11 135006516 + 129652050 129652789 L1PA5 6144 + 5398 6144 50677 590 0 7 149 chain 18634 chr11 135006516 + 129655769 129656032 THE1B 368 - 61 368 131123 62 13 59 17 1 0 49 1 0 120 chain 57446 chr11 135006516 + 129671720 129672510 LTR12_ 688 - 0 688 54268 154 103 0 142 1 2 390 chain 20484 chr11 135006516 + 129672576 129672870 L1PBa 3878 + 3051 3325 125667 159 32 13 84 1 0 18 chain 285669 chr11 135006516 + 129672899 129676905 L1PBa1 4058 + 14 4040 14310 22 17 14 5 1 0 18 0 1 118 10 11 227 5 3 118 1 0 11 8 7 47 15 14 242 18 19 72 18 18 659 0 9 9 6 4 560 0 4 70 0 4 128 2 1 34 8 16 122 1 5 27 7 1 20 0 2 35 5 0 12 5 30 30 0 10 130 0 4 67 2 1 105 0 3 65 0 1 286 1 0 71 0 1 158 1 0 7 8 9 5 2 0 9 9 1 5 1 0 45 5 3 88 15 14 17 2 1 11 6 0 14 3 1 19 7 5 24 1 0 6 22 18 5 1 0 9 1 0 17 4 3 39 chain 13427 chr11 135006516 + 129679405 129679730 L1PB1 5432 + 5114 5410 146594 19 2 1 13 16 11 11 3 1 50 2 1 16 1 0 9 0 1 21 1 2 9 1 0 14 28 16 18 11 8 11 2 0 24 1 0 21 1 0 13 1 0 6 chain 7388 chr11 135006516 + 129684769 129684856 LTR12D 1347 - 823 910 174854 87 chain 97799 chr11 135006516 + 129717302 129718401 SVA_D 2077 - 0 2019 37336 9 1 0 127 0 20 191 1 4 179 3 0 40 0 897 227 0 4 321 chain 23213 chr11 135006516 + 129772917 129773195 AluSp 311 + 10 284 114627 118 4 0 156 chain 23961 chr11 135006516 + 129780673 129780955 AluSp 311 - 14 296 110561 282 chain 118900 chr11 135006516 + 129840846 129842280 LTR12C 1709 - 0 1709 31455 168 0 102 63 2 0 5 13 17 126 0 4 106 3 1 5 1 0 210 1 159 375 0 11 61 0 1 295 chain 24014 chr11 135006516 + 129847195 129847476 AluSc5 308 - 27 308 110250 281 chain 6871 chr11 135006516 + 129850501 129850639 L1MB8 1703 + 1390 1523 178424 30 25 19 24 12 13 47 chain 23928 chr11 135006516 + 129857614 129857907 AluYk4 311 + 1 295 110765 122 2 1 155 0 2 14 chain 3881 chr11 135006516 + 129888393 129888436 MER2 342 + 135 178 209152 43 chain 108823 chr11 135006516 + 129891384 129892746 LTR12C 1709 + 0 1709 34484 336 0 43 85 0 1 61 0 1 46 7 30 47 0 278 184 9 6 106 0 4 162 5 6 223 7 6 84 chain 2894 chr11 135006516 + 129908265 129908335 L1MB7 1623 + 1343 1410 227121 21 23 20 26 chain 8888 chr11 135006516 + 129911889 129912103 Tigger3 1187 + 935 1144 166198 44 1 0 28 64 63 13 10 8 38 1 0 15 chain 78491 chr11 135006516 + 129913859 129914823 SVA_D 2077 - 337 2077 44275 301 0 1 25 0 99 47 17 66 10 0 1 42 0 466 23 0 156 457 1 9 8 3 0 6 3 0 6 0 3 7 1 0 7 chain 165205 chr11 135006516 + 129960152 129962596 SVA_F 1814 - 0 1805 22627 10 2 0 590 425 0 251 0 15 50 1 0 10 226 0 879 chain 2466 chr11 135006516 + 129960754 129960782 SVA_F 1814 - 698 726 221543 28 chain 8688 chr11 135006516 + 129960782 129960903 SVA_F 1814 - 627 775 113609 17 1 0 81 18 46 4 chain 13597 chr11 135006516 + 129960903 129961179 SVA_F 1814 - 600 889 79203 203 1 0 11 7 6 32 18 33 4 chain 1774 chr11 135006516 + 129961537 129961573 SVA_F 1814 - 1401 1440 79203 15 4 7 17 chain 7497 chr11 135006516 + 129961573 129961653 SVA_F 1814 - 768 848 153410 80 chain 4082 chr11 135006516 + 129961656 129961701 SVA_F 1814 - 866 911 190582 45 chain 160017 chr11 135006516 + 129977261 129979104 L1PA5 6144 + 4280 6144 23338 64 0 4 852 0 6 87 1 5 466 4 6 8 0 4 28 0 1 333 chain 6047 chr11 135006516 + 129984156 129984230 U4 144 - 70 144 184830 74 chain 24263 chr11 135006516 + 130023403 130023691 AluY 311 + 1 286 108881 29 4 0 102 0 1 153 chain 4727 chr11 135006516 + 130048287 130048342 LTR62 707 - 652 707 198198 55 chain 230184 chr11 135006516 + 130122520 130125116 L1PA5 6144 + 3539 6131 17297 141 0 4 405 4 0 205 1 0 489 0 2 511 6 0 445 0 1 389 chain 8285 chr11 135006516 + 130127187 130127599 MLT1C 463 + 65 457 169486 59 6 0 14 1 0 6 0 2 15 273 258 38 chain 82212 chr11 135006516 + 130128804 130129834 L1PA7 6471 + 4634 6446 42673 19 10 18 101 0 3 202 4 776 87 1 0 606 chain 3138 chr11 135006516 + 130143648 130143681 Tigger4a 237 - 0 33 222224 33 chain 4744 chr11 135006516 + 130152230 130152315 L1MB3 1562 - 149 241 197977 55 17 24 13 chain 8274 chr11 135006516 + 130164522 130164641 MER85 139 - 0 132 169549 40 0 10 28 5 8 46 chain 6226 chr11 135006516 + 130174534 130174609 U3 216 - 141 216 183348 75 chain 114713 chr11 135006516 + 130174692 130176587 L1PB2 3958 + 2262 3835 32877 215 3 0 221 0 2 224 1 0 170 1 0 107 0 10 77 1 3 16 2 0 56 64 46 16 1 4 9 2 0 12 5 1 166 1 0 44 305 0 20 1 0 94 1 0 60 chain 49370 chr11 135006516 + 130192134 130192725 LTR10C 591 - 0 591 59469 81 0 2 479 2 0 29 chain 31559 chr11 135006516 + 130201223 130201566 HERV-Fc1_LTR1 345 - 0 345 81548 65 0 2 278 chain 18019 chr11 135006516 + 130201569 130202020 LTR49-int 1717 - 574 1026 132806 4 1 0 56 113 118 57 7 6 84 37 38 24 0 1 30 1 0 9 1 0 5 6 4 16 chain 7847 chr11 135006516 + 130204420 130204526 L1MA3 4352 - 826 931 172026 18 2 1 86 chain 12917 chr11 135006516 + 130206905 130207205 LTR12C 1709 - 600 940 148568 113 129 169 58 chain 3179 chr11 135006516 + 130207053 130207090 LTR12C 1709 - 1026 1064 221372 33 0 1 4 chain 6886 chr11 135006516 + 130216591 130216697 MLT2C2 476 + 0 105 178306 82 6 7 7 2 0 9 chain 24303 chr11 135006516 + 130230729 130231021 AluSp 311 - 7 300 108642 118 0 1 174 chain 7367 chr11 135006516 + 130235372 130235519 MER63B 433 + 43 202 175001 36 7 11 28 16 25 17 2 1 41 chain 20365 chr11 135006516 + 130252577 130252845 MER4D1 891 - 5 270 126015 120 1 2 101 4 0 42 chain 20630 chr11 135006516 + 130317507 130317745 AluSp 311 + 57 295 125189 238 chain 27743 chr11 135006516 + 130338378 130338679 AluYk12 309 + 0 301 93894 301 chain 3496 chr11 135006516 + 130402332 130402375 MSTB 430 + 0 43 215412 43 chain 125004 chr11 135006516 + 130408835 130410398 L1PA10 4194 - 44 1601 29392 34 3 0 4 0 1 427 1 0 34 0 1 138 1 0 80 16 8 94 0 1 366 6 0 179 0 4 99 0 4 13 1 2 31 0 1 36 chain 45952 chr11 135006516 + 130429425 130429963 L1PA5 6144 + 5591 6135 62081 71 1 4 11 0 2 408 0 1 47 chain 40065 chr11 135006516 + 130434281 130434722 LTR7Y 441 - 0 441 69227 441 chain 291520 chr11 135006516 + 130435954 130439424 HERVH-int 3825 - 0 3825 13930 225 3 8 53 8 7 194 8 218 39 9 11 947 0 1 270 1 2 131 11 38 800 0 1 99 0 3 13 1 3 5 0 1 59 1 0 37 6 56 24 1 0 10 1 0 25 0 56 489 chain 11483 chr11 135006516 + 130439424 130439569 LTR7Y 441 - 0 146 154360 51 7 8 87 chain 40484 chr11 135006516 + 130439575 130440016 LTR7Y 441 - 0 441 68615 441 chain 5012 chr11 135006516 + 130462188 130462363 MER53 195 - 1 191 194997 18 93 107 31 1 2 32 chain 6063 chr11 135006516 + 130464962 130465037 Tigger3c 601 + 398 503 184725 59 0 30 16 chain 21929 chr11 135006516 + 130533178 130533427 L1PA4 6152 + 5898 6152 120505 243 0 5 6 chain 14105 chr11 135006516 + 130533582 130533757 L1PA6 6164 + 5984 6159 144199 175 chain 21972 chr11 135006516 + 130549475 130549841 THE1B 368 - 0 368 120347 166 2 0 8 0 2 6 15 14 16 19 0 8 1 20 75 6 11 29 2 0 13 chain 182170 chr11 135006516 + 130552222 130554772 L1PA15 4387 - 60 2685 20767 12 3 1 96 15 10 23 1 0 46 10 9 25 2 1 168 4 3 13 4 7 21 3 1 64 4 0 9 13 5 462 1 2 143 0 1 36 6 0 240 1 2 105 0 2 33 0 1 121 0 88 95 0 1 25 0 12 296 15 13 10 1 0 106 0 1 150 1 0 28 8 9 37 1 0 5 1 0 87 chain 10447 chr11 135006516 + 130600707 130600889 MER30 238 + 37 238 158503 69 9 25 20 1 7 41 21 18 21 chain 8715 chr11 135006516 + 130604176 130604284 MLT1B 390 - 7 116 167114 61 0 1 47 chain 39014 chr11 135006516 + 130623392 130623843 LTR7 482 - 0 482 70727 187 0 31 264 chain 290831 chr11 135006516 + 130625102 130628580 HERVH-int 3825 - 0 3825 13971 141 0 2 213 1 0 131 8 218 619 7 5 48 1 0 325 0 1 101 0 10 182 0 3 110 4 31 42 0 1 861 0 3 13 1 3 5 0 1 59 1 0 37 6 56 24 1 0 10 1 0 38 5 0 12 19 0 12 0 19 60 0 51 108 7 5 265 chain 39305 chr11 135006516 + 130628582 130629032 LTR7 482 - 0 481 70315 186 0 31 264 chain 4172 chr11 135006516 + 130702628 130702674 MER121 330 + 127 173 204954 46 chain 191922 chr11 135006516 + 130725484 130727715 L1PA6 6164 - 16 2272 19871 136 1 9 548 0 2 55 1 0 82 1 0 323 0 1 387 1 9 80 1 5 142 0 4 473 chain 20052 chr11 135006516 + 130745506 130745740 L1PA5 6144 + 5901 6135 126966 234 chain 230366 chr11 135006516 + 130811202 130813718 L1PA3long 6157 - 0 2529 17288 235 0 13 2281 chain 66808 chr11 135006516 + 130826647 130827381 L1PA3long 6157 + 5424 6157 49730 583 1 0 150 chain 525242 chr11 135006516 + 130840652 130847441 L1PA7 6471 - 6 6470 4665 325 0 1 436 1 0 82 1 0 1133 0 1 185 329 0 208 0 1 83 6 7 4 0 1 165 4 0 147 0 3 5 5 1 91 5 7 13 11 1 68 2 1 10 4 10 449 0 4 122 8 12 248 7 0 406 0 4 990 0 2 836 6 8 394 chain 542773 chr11 135006516 + 130854160 130860183 L1PA3long 6157 + 0 6156 2381 152 0 1 52 5 6 565 0 128 540 0 2 238 1 0 312 0 1 2242 0 1 1916 chain 27502 chr11 135006516 + 130920321 130920687 THE1C 375 + 0 363 94645 22 0 1 92 8 5 230 1 0 13 chain 5456 chr11 135006516 + 130939782 130939852 L1PB3 3668 - 192 262 190456 70 chain 133962 chr11 135006516 + 130953559 130955030 SVA_E 1901 - 21 1901 27218 617 1 0 35 0 78 54 2 1 16 0 337 310 0 1 107 3 0 179 2 0 145 chain 182079 chr11 135006516 + 130985075 130987321 L1PA7 6471 + 4211 6470 20774 152 1 2 4 1 0 305 0 4 130 0 2 259 0 2 268 0 1 235 0 1 32 12 13 12 5 6 45 2 3 450 1 0 142 6 7 184 chain 19733 chr11 135006516 + 131023132 131023484 THE1B 368 - 0 368 128005 56 1 2 10 2 0 60 60 76 41 17 18 105 chain 62943 chr11 135006516 + 131043199 131043879 L1PA2 6032 - 0 680 51471 680 chain 78472 chr11 135006516 + 131043879 131044732 L1PA2 6032 + 4495 5348 44285 853 chain 46409 chr11 135006516 + 131083164 131083762 MER4A1_ 611 + 0 599 61677 93 33 34 472 chain 28038 chr11 135006516 + 131124436 131124825 LTR7 482 - 13 482 92861 157 1 0 4 0 1 12 1 32 38 0 1 13 1 11 85 8 46 69 chain 282962 chr11 135006516 + 131126083 131129734 HERVH-int 3825 - 0 3799 14473 225 1 3 148 1 4 6 3 0 101 8 218 39 9 5 6 0 7 478 0 1 574 0 4 77 0 1 101 1 4 104 7 34 254 9 0 61 2 1 140 15 0 450 1 0 49 2 1 5 0 1 6 41 0 20 2 1 47 21 18 12 1 0 15 29 0 24 1 0 10 1 0 37 1 0 45 14 16 139 1 0 307 chain 21624 chr11 135006516 + 131129770 131130174 LTR7 482 - 8 482 121679 162 1 0 4 0 1 15 0 31 14 22 23 41 0 51 17 78 65 50 chain 5506 chr11 135006516 + 131133045 131133114 L1PB1 5432 - 1765 1834 185381 69 chain 102995 chr11 135006516 + 131133114 131134855 L1PB1 5432 + 3643 5098 35988 81 5 8 197 320 0 64 0 55 491 0 17 8 31 0 57 0 2 174 2 9 155 20 0 53 0 2 12 15 14 56 chain 462105 chr11 135006516 + 131137679 131143370 L1PA7 6471 - 10 5740 8324 254 0 1 66 0 3 47 2 1 179 0 1 209 5 7 62 0 10 280 0 2 243 1 0 111 1 0 497 1 11 320 0 5 322 0 1 207 1 3 66 0 4 46 1 0 403 0 4 100 0 1 358 27 9 107 3 5 706 1 0 4 1 2 45 0 1 93 1 0 55 0 6 122 1 2 93 5 6 571 0 1 28 0 4 46 chain 479117 chr11 135006516 + 131182890 131188571 L1PA6 6164 + 437 6162 7760 72 2 1 621 10 16 643 0 12 287 4 5 119 0 2 117 0 2 193 0 6 656 0 1 188 3 7 136 0 4 130 0 1 20 0 10 6 6 0 627 1 0 188 0 4 132 0 1 17 0 1 603 0 1 49 1 0 106 2 0 67 0 2 660 3 0 12 chain 520734 chr11 135006516 + 131303705 131309835 L1PA6 6164 - 10 6162 5078 44 0 1 282 0 1 43 0 9 368 3 2 502 1 0 4 0 1 531 0 4 666 1 0 46 0 5 460 2 3 260 0 1 15 1 0 790 0 3 115 0 1 209 0 1 765 1 0 557 6 5 458 chain 33793 chr11 135006516 + 131370480 131370872 L1PA5 6144 - 0 388 77948 229 4 0 159 chain 65874 chr11 135006516 + 131377095 131377801 L1PA2 6032 - 1147 1853 50072 706 chain 104245 chr11 135006516 + 131377801 131378941 L1PA2 6032 + 4890 6031 35679 282 0 1 858 chain 32459 chr11 135006516 + 131466664 131467101 MLT2A1 477 - 0 477 80097 49 2 0 5 0 40 106 0 1 60 9 12 24 1 2 8 4 1 169 chain 34660 chr11 135006516 + 131477805 131478207 L1PA5 6144 - 6 415 76676 141 1 8 260 chain 27395 chr11 135006516 + 131502567 131502861 AluYg6 310 - 11 305 94987 294 chain 3905 chr11 135006516 + 131556522 131556577 Tigger2a 444 - 388 444 208780 32 1 2 22 chain 27623 chr11 135006516 + 131569431 131569787 THE1C 375 - 0 375 94289 26 1 0 159 1 0 46 0 20 90 0 1 33 chain 102597 chr11 135006516 + 131580913 131582036 L1PA3long 6157 + 5035 6157 36107 863 1 0 259 chain 10108 chr11 135006516 + 131598474 131598602 MER85 139 + 0 139 160049 11 0 1 83 0 10 34 chain 3234 chr11 135006516 + 131611663 131611698 tRNA-Tyr-TAC 38 + 0 35 220366 35 chain 26115 chr11 135006516 + 131621198 131621504 AluYk4 311 + 0 302 99555 23 4 0 279 chain 106688 chr11 135006516 + 131622578 131623771 L1PA3long 6157 + 4939 6132 35070 116 2 3 598 1 0 476 chain 33014 chr11 135006516 + 131623803 131624176 L1PA4 6152 + 5768 6141 79191 373 chain 17910 chr11 135006516 + 131719664 131719860 L1PA4 6152 + 5940 6136 133080 196 chain 18096 chr11 135006516 + 131742721 131742932 L1PA8 5853 - 480 691 132603 211 chain 36922 chr11 135006516 + 131742942 131743417 L1PA8 5853 + 5380 5849 73628 140 1 2 42 1 0 45 2 0 73 1 0 5 2 1 52 2 1 19 1 0 89 chain 11861 chr11 135006516 + 131743694 131743852 L1PA8 5853 - 144 298 152783 30 2 1 70 2 0 46 1 0 7 chain 23243 chr11 135006516 + 131863620 131863913 AluSq2 311 + 8 300 114475 95 1 0 197 chain 27088 chr11 135006516 + 131899085 131899391 L1PA4 6152 - 0 306 95979 306 chain 6928 chr11 135006516 + 131926918 131927000 Tigger8 508 + 213 295 177982 82 chain 26609 chr11 135006516 + 131963749 131964146 MER57B1 401 - 0 401 97626 33 1 3 20 20 22 37 8 12 138 1 0 131 3 0 5 chain 3060 chr11 135006516 + 131968723 131968757 MER91A 194 - 144 178 223823 34 chain 12827 chr11 135006516 + 131978278 131978532 L1PB1 5432 + 5159 5393 148945 9 2 0 52 2 1 16 1 0 44 1 0 20 23 14 11 9 6 14 2 0 24 1 0 23 chain 51585 chr11 135006516 + 131978609 131979249 L1PA7 6471 - 10 653 57899 131 3 10 7 7 0 336 8 11 148 chain 10000 chr11 135006516 + 132058040 132058165 MER20 218 + 91 216 160578 125 chain 54209 chr11 135006516 + 132067401 132068021 L1PA5 6144 - 4 627 56223 11 0 3 609 chain 23737 chr11 135006516 + 132073509 132073826 AluY 311 + 6 303 111850 118 7 0 171 13 0 8 chain 31734 chr11 135006516 + 132077039 132077533 MER1A 529 + 41 524 81272 39 4 0 90 3 0 5 5 14 16 1 0 31 0 2 5 2 0 139 8 0 61 29 26 10 1 0 45 chain 28955 chr11 135006516 + 132083621 132083926 AluYa5 310 - 4 309 89199 305 chain 74966 chr11 135006516 + 132095608 132096500 L1PA7 6471 - 2 899 46027 161 1 0 176 0 1 287 0 2 225 0 3 42 chain 6707 chr11 135006516 + 132145959 132146246 L1MA6 2487 - 85 305 179633 5 1 0 18 3 0 37 178 115 45 chain 82941 chr11 135006516 + 132189033 132190057 L1P1 4361 + 1 1027 42362 449 22 20 97 0 2 146 0 1 64 0 1 246 chain 525331 chr11 135006516 + 132190067 132196071 L1PA4 6152 + 11 6151 4652 144 0 1 210 0 1 213 1 0 118 7 0 64 8 136 282 28 27 227 1 0 1826 0 4 467 0 1 622 0 4 277 3 6 663 0 4 843 chain 5717 chr11 135006516 + 132237683 132237776 L1MB3 1562 - 144 241 187955 52 16 20 25 chain 253666 chr11 135006516 + 132237776 132240911 L1PA7 6471 + 3283 6465 16046 10 0 1 88 1 0 98 5 6 16 6 7 14 1 2 101 6 5 218 2 1 333 0 11 384 1 0 303 2 3 101 0 3 212 0 1 381 0 30 8 5 0 4 0 4 70 0 2 765 chain 449703 chr11 135006516 + 132245373 132250969 HERVL-int 5654 + 0 5647 8774 255 0 1 84 1 0 335 0 18 4 17 0 145 0 1 27 0 5 8 0 1 453 7 8 132 0 6 6 14 8 225 1 3 56 0 1 116 0 1 346 6 7 88 7 5 196 3 2 296 1 2 67 1 0 1058 0 2 96 0 1 84 4 3 215 0 4 138 0 3 337 7 18 535 0 6 154 2 12 51 0 4 18 chain 31848 chr11 135006516 + 132250976 132251415 MLT2A1 477 + 0 472 81096 117 1 0 4 0 1 46 5 2 11 0 1 21 0 1 181 4 0 7 7 44 4 0 1 31 chain 538750 chr11 135006516 + 132253313 132259446 L1PA4 6152 + 0 6141 3033 704 1 0 329 0 1 204 1 2 245 0 2 22 0 1 1693 1 0 2095 0 4 74 8 9 756 chain 28804 chr11 135006516 + 132311052 132311361 AluYa5 310 - 2 310 89881 182 1 0 126 chain 55601 chr11 135006516 + 132346118 132346744 L1PA4 6152 + 5525 6151 55359 626 chain 532573 chr11 135006516 + 132348921 132354957 L1PA3long 6157 + 4 6142 3900 149 11 23 600 0 128 31 0 4 87 0 1 19 6 7 1081 50 0 3 3 0 185 0 4 1411 0 1 622 0 4 1778 chain 31508 chr11 135006516 + 132359584 132360023 L1PA8 5853 - 4 436 81629 78 12 11 19 2 1 43 5 4 14 3 2 69 2 0 46 1 0 145 chain 46667 chr11 135006516 + 132370467 132371033 L1PA8 5853 - 0 582 61480 93 0 21 51 1 0 9 2 1 70 2 0 46 1 0 291 chain 119075 chr11 135006516 + 132378753 132380322 THE1A-int 1579 + 0 1574 31379 15 1 3 122 41 42 220 11 6 86 8 12 88 0 2 134 0 4 5 3 0 353 3 1 5 0 2 474 chain 25048 chr11 135006516 + 132380335 132380672 THE1A 353 + 8 351 104556 102 1 0 30 3 1 138 1 0 27 0 10 35 chain 69547 chr11 135006516 + 132388010 132391327 L1PA8 5853 - 42 1052 48589 51 1 0 16 1 0 44 0 1 20 2 1 70 2 0 44 1 0 31 2345 44 146 13 0 61 2 4 68 8 16 110 0 2 281 chain 23225 chr11 135006516 + 132391329 132391662 L1PA8 5853 + 5489 5852 114565 75 1 0 44 2 0 9 0 33 28 2 1 13 1 0 48 2 1 19 1 0 70 1 5 17 chain 10500 chr11 135006516 + 132395596 132395717 L1PA7 6471 - 3 124 158249 121 chain 3777 chr11 135006516 + 132395717 132395759 U6 107 + 26 68 210697 42 chain 8798 chr11 135006516 + 132416192 132416417 L1PB1 5432 - 5 207 166654 4 1 0 5 3 0 14 1 0 12 1 0 15 5 7 24 68 51 15 1 0 44 1 0 11 chain 3562 chr11 135006516 + 132421000 132421039 LTR8 732 + 641 680 214276 39 chain 28887 chr11 135006516 + 132430522 132430923 L1PB1 5432 - 652 1066 89501 158 0 1 4 29 41 210 chain 5366 chr11 135006516 + 132515990 132516107 L1PB1 5432 + 5308 5417 191351 19 2 0 4 1 0 15 2 0 24 23 21 13 1 0 13 chain 26150 chr11 135006516 + 132558594 132558879 AluYb8 318 + 38 316 99400 80 7 0 198 chain 10652 chr11 135006516 + 132594280 132594431 THE1B 368 - 202 368 157599 101 16 31 34 chain 27948 chr11 135006516 + 132595707 132596055 THE1B-int 1605 - 1244 1592 93177 115 2 0 7 0 2 224 chain 24895 chr11 135006516 + 132596055 132596400 THE1B 368 - 11 368 104603 185 7 6 23 2 0 79 5 20 44 chain 527114 chr11 135006516 + 132626676 132633167 L1PA7 6471 - 1 6470 4490 4 1 0 189 20 0 647 0 3 272 2 1 219 5 0 312 0 4 558 1 0 4 0 1 50 0 1 598 2 5 898 5 3 86 2 3 91 0 2 263 0 1 226 10 2 746 12 13 203 1 0 98 0 1 249 24 22 281 1 4 7 2 0 335 0 7 7 13 6 47 chain 5612 chr11 135006516 + 132666794 132666940 L1MB7 1623 - 518 668 188962 10 0 3 43 1 0 11 56 58 25 chain 12890 chr11 135006516 + 132688678 132688824 L1PA4 6152 + 5997 6143 148669 146 chain 4414 chr11 135006516 + 132688853 132688906 MER51B 395 - 216 269 201753 53 chain 22590 chr11 135006516 + 132713799 132714160 THE1B 368 + 0 368 117631 44 0 15 117 7 6 26 14 7 72 24 23 39 7 8 11 chain 12159 chr11 135006516 + 132773305 132773472 MER4B 649 + 0 161 151575 92 6 0 69 chain 32658 chr11 135006516 + 132898542 132899104 L1PA17 2846 + 2150 2691 79752 53 3 0 60 0 1 127 2 0 8 9 0 12 3 9 75 31 22 16 1 0 26 46 44 29 1 0 16 2 1 42 chain 21121 chr11 135006516 + 132962345 132962596 AluSx4 309 + 10 256 123484 36 4 0 63 1 0 147 chain 11701 chr11 135006516 + 132963194 132963362 L1PA8 5853 - 1 159 153462 16 8 0 76 1 0 19 6 5 42 chain 34904 chr11 135006516 + 132979045 132979560 LTR12F 595 - 0 595 76338 178 0 1 28 7 6 167 18 9 21 9 17 24 6 87 57 chain 18253 chr11 135006516 + 133046385 133046696 MSTA 426 + 60 414 132190 35 0 1 50 23 28 31 3 7 10 18 46 32 1 6 108 chain 7674 chr11 135006516 + 133070682 133070851 L1PA15 4387 + 4168 4326 173080 16 2 1 16 8 4 12 2 1 38 17 14 44 3 1 11 chain 49887 chr11 135006516 + 133106373 133106962 LTR10C 591 + 0 591 59096 510 0 1 4 0 1 75 chain 31744 chr11 135006516 + 133115583 133116017 L1PA8 5853 + 5415 5853 81257 149 1 0 44 3 1 69 13 10 38 0 8 6 2 1 19 1 0 19 0 1 33 0 3 37 chain 17879 chr11 135006516 + 133186278 133186524 L1PA8 5853 + 5598 5853 133163 10 2 0 69 12 25 38 2 1 19 1 0 93 chain 196920 chr11 135006516 + 133198561 133200740 L1PA4 6152 + 3972 6151 19432 912 4 0 397 1 5 90 1 0 643 0 1 131 chain 26964 chr11 135006516 + 133202785 133203607 L1PA14 3548 + 3000 3465 96393 5 2 0 98 348 12 16 2 0 6 1 0 17 0 1 7 5 1 58 1 0 62 0 1 48 12 9 30 12 11 11 1 0 3 1 0 19 1 0 38 6 0 12 chain 4892 chr11 135006516 + 133224115 133224236 HAL1-2a_MD 234 - 9 141 196359 23 12 0 11 13 1 24 2 0 8 5 42 23 chain 4810 chr11 135006516 + 133240894 133241252 L1MA4A 3247 + 2803 3130 197232 15 1 0 8 1 0 13 262 234 33 2 1 23 chain 22121 chr11 135006516 + 133260078 133260331 AluY 311 + 7 256 119692 30 1 0 96 3 0 123 chain 21769 chr11 135006516 + 133283139 133283386 L1PA2 6032 + 5785 6032 121137 247 chain 20812 chr11 135006516 + 133287380 133287621 L1PA4 6152 - 0 241 124562 241 chain 14580 chr11 135006516 + 133291865 133292043 L1PA7 6471 - 4 180 142660 8 2 0 168 chain 21799 chr11 135006516 + 133310007 133310309 AluSp 311 + 0 297 121022 98 2 0 20 3 1 13 12 11 154 chain 9507 chr11 135006516 + 133363640 133363742 L1PA3long 6157 - 1049 1151 162125 102 chain 91494 chr11 135006516 + 133363742 133364776 L1PA3long 6157 + 5132 6157 39135 175 2 0 46 6 0 31 1 0 773 chain 159672 chr11 135006516 + 133364824 133367035 L1PB1 5432 - 8 2196 23377 4 1 0 16 1 0 13 1 0 21 1 0 15 29 28 18 40 28 41 9 8 11 2 1 50 20 14 9 1 0 9 1 0 24 3 0 7 1 4 481 0 1 123 13 12 4 0 1 261 0 1 300 10 11 176 5 7 17 1 0 472 chain 3236 chr11 135006516 + 133421166 133421234 L1MD3 1191 + 989 1058 220309 10 2 0 22 6 10 4 1 0 23 chain 18649 chr11 135006516 + 133458892 133459106 L1PA5 6144 - 0 213 131091 137 1 0 76 chain 17468 chr11 135006516 + 133460040 133460236 L1PA4 6152 - 908 1101 134334 25 3 0 168 chain 77321 chr11 135006516 + 133460249 133461145 L1PA4 6152 + 5252 6152 44825 52 0 4 663 7 0 30 1 8 143 chain 29153 chr11 135006516 + 133496669 133497080 LTR7 482 + 0 482 88293 69 8 46 23 0 1 85 0 1 42 2 31 121 16 18 45 chain 304128 chr11 135006516 + 133497082 133500931 HERVH-int 3825 + 0 3824 13237 333 1 0 37 6 10 73 0 1 68 135 66 16 4 14 12 4 1 19 2 22 26 2 1 80 1 0 447 15 0 416 0 1 42 4 31 127 1 0 63 4 3 213 0 1 325 1 0 48 7 5 850 6 0 7 3 9 41 24 25 294 6 11 86 chain 554543 chr11 135006516 + 133510698 133516712 L1PA2 6032 + 2 6021 881 713 0 1 104 0 4 5197 chain 83784 chr11 135006516 + 133543160 133544099 L1PA4 6152 + 5198 6138 41995 178 1 3 305 4 2 352 0 1 99 chain 4209 chr11 135006516 + 133556577 133556627 MER58B 340 + 150 200 204434 50 chain 28681 chr11 135006516 + 133559255 133559558 AluYa5 310 - 6 309 90402 303 chain 13451 chr11 135006516 + 133565516 133565810 MLT2B4 540 + 47 432 146528 42 1 0 104 99 106 27 0 85 21 chain 25194 chr11 135006516 + 133594384 133594660 L1PA4 6152 - 0 277 103769 113 0 1 163 chain 43257 chr11 135006516 + 133607362 133607875 L1PA5 6144 + 5614 6134 65108 358 0 6 11 1 2 143 chain 219640 chr11 135006516 + 133632746 133635169 L1PA3long 6157 + 3732 6156 17908 1681 0 1 570 0 1 4 1 0 167 chain 115721 chr11 135006516 + 133652061 133653544 LTR12C 1709 + 0 1709 32552 244 0 47 66 18 21 4 0 1 31 7 8 51 2 1 175 0 121 67 1 0 48 0 12 50 0 1 8 0 41 113 1 0 6 4 2 96 10 14 481 chain 48354 chr11 135006516 + 133683329 133684016 L1PA16 3655 + 2913 3595 60207 9 1 0 46 0 4 228 0 1 5 15 13 31 16 14 26 2 0 285 7 4 16 chain 114480 chr11 135006516 + 133708303 133709586 L1PA4 6152 + 4868 6152 32951 1128 1 2 154 chain 342172 chr11 135006516 + 133718323 133722886 L1PB1 5432 - 19 4488 11826 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 17 7 5 1 0 15 1 0 44 22 20 50 2 0 6 19 14 13 1 0 17 3 0 14 1 0 50 16 16 53 0 1 357 7 27 615 1 0 31 5 6 69 1 0 146 2 5 59 0 2 584 4 1 7 0 4 504 71 0 46 0 1 24 7 0 893 0 6 52 1 0 124 29 13 5 2 0 336 0 4 118 chain 10777 chr11 135006516 + 133740080 133740229 Tigger3a 397 + 159 310 157088 56 9 11 84 chain 60054 chr11 135006516 + 133748229 133748976 L1P3 4156 - 17 767 52794 22 2 1 11 2 0 560 0 4 47 0 2 103 chain 425477 chr11 135006516 + 133749015 133754427 L1PA3long 6157 - 15 5246 9407 236 1 0 2978 159 0 568 0 2 31 0 1 55 0 2 209 0 3 450 12 14 330 94 85 86 48 47 51 54 29 30 9 13 11 chain 26463 chr11 135006516 + 133862600 133862903 L1PA5 6144 + 5832 6135 98193 303 chain 114800 chr11 135006516 + 133871960 133873318 LTR12C 1709 - 1 1705 32843 480 0 4 106 10 326 214 10 9 69 0 27 469 chain 37599 chr11 135006516 + 133922195 133922738 MER41A 554 - 0 554 72685 53 28 33 252 1 3 120 0 1 4 2 3 26 18 20 39 chain 21027 chr11 135006516 + 133924003 133924279 AluSq2 311 + 11 295 123826 31 0 6 84 10 12 151 chain 5886 chr11 135006516 + 133936093 133936177 MER4B 649 - 339 449 186317 62 5 31 17 chain 19915 chr11 135006516 + 133950272 133950612 THE1B 368 + 0 356 127415 13 2 0 20 0 10 64 2 3 52 1 0 36 45 55 34 10 8 61 chain 122023 chr11 135006516 + 133950667 133952292 THE1B-int 1605 + 45 1605 30378 387 0 25 371 0 1 39 1 0 324 2 1 105 90 0 103 1 2 202 chain 97134 chr11 135006516 + 133959216 133960323 L1PA4 6152 - 9 1123 37529 133 11 14 705 1 5 257 chain 22092 chr11 135006516 + 133965250 133965536 AluSc5 308 + 6 293 119830 125 11 10 132 0 2 18 chain 464725 chr11 135006516 + 133972091 133977378 L1PA5 6144 + 812 6135 8231 43 1 0 579 0 2 870 1 0 71 0 4 196 0 2 198 0 1 392 1 0 75 0 4 260 1 0 165 0 3 398 1 3 269 0 4 432 0 2 357 0 5 128 0 4 16 12 19 658 22 22 141 chain 119897 chr11 135006516 + 133983097 133984465 L1PA5 6144 - 0 1386 31093 11 1 3 8 0 6 973 1 0 93 0 11 281 chain 59705 chr11 135006516 + 134057927 134058721 LTR12 884 + 0 869 52988 24 1 0 108 0 91 114 48 7 30 10 32 161 0 4 298 chain 4203 chr11 135006516 + 134058174 134058222 LTR12 884 + 139 187 161101 48 chain 9749 chr11 135006516 + 134091275 134091425 L1PA7 6471 - 2 145 161848 11 0 4 10 2 1 4 0 1 102 11 0 10 chain 4088 chr11 135006516 + 134091987 134092037 MER21B 843 + 772 822 206106 50 chain 4633 chr11 135006516 + 134148577 134148667 LTR41B 718 - 613 703 199271 17 1 0 7 20 21 45 chain 69720 chr11 135006516 + 134165975 134166730 L1PA3long 6157 + 5386 6142 48513 658 0 1 97 chain 28620 chr11 135006516 + 134168361 134168715 THE1A 353 + 0 353 90655 110 1 0 243 chain 13179 chr11 135006516 + 134180010 134180188 MER30 238 - 1 204 147549 38 3 0 61 1 0 10 5 34 60 chain 43449 chr11 135006516 + 134191329 134191822 L1PA5 6144 + 5650 6143 64873 493 chain 24819 chr11 135006516 + 134273928 134274212 L1PA4 6152 - 13 297 105773 284 chain 5981 chr11 135006516 + 134318230 134318400 Kanga1b 635 + 78 251 185420 30 0 3 6 3 1 7 1 0 6 3 0 5 61 67 48 chain 463365 chr11 135006516 + 134362194 134367540 L1PA5 6144 - 16 5380 8280 129 17 18 150 0 1 665 0 1 342 0 10 1169 0 1 294 0 10 142 2 1 246 5 0 643 1 0 38 1 0 312 0 1 116 0 1 98 1 0 303 0 1 672 chain 217462 chr11 135006516 + 134419008 134421473 L1PA4 6152 - 13 2484 18031 155 1 2 532 0 1 784 0 1 511 0 1 470 1 0 5 0 3 6 chain 3323 chr11 135006516 + 134482049 134482090 U2 167 - 126 167 218513 41 chain 57954 chr11 135006516 + 134499291 134500124 L1PA5 6144 + 5384 6144 54000 12 0 3 5 3 0 44 150 77 619 chain 7223 chr11 135006516 + 134500604 134500715 L1MB1 2102 + 1897 2005 175925 19 1 0 23 6 4 62 chain 2980 chr11 135006516 + 134518839 134518875 MLT1A 405 + 138 174 225450 36 chain 90706 chr11 135006516 + 134562557 134563593 L1P1 4361 + 586 1623 39387 447 0 1 589 chain 29094 chr11 135006516 + 134578830 134579227 L1PB3 3668 - 192 590 88575 84 2 1 13 1 0 18 3 7 59 1 0 216 chain 8463 chr11 135006516 + 134587483 134587593 MLT1H1 527 - 17 130 168497 43 0 3 67 chain 320077 chr11 135006516 + 134590063 134593673 L1PA5 6144 - 14 3627 12594 707 0 1 120 1 5 993 0 1 219 0 1 574 0 1 219 1 0 5 1 2 333 5 0 432 chain 2856 chr11 135006516 + 134644964 134644994 U2 167 - 137 167 227728 30 chain 3580 chr11 135006516 + 134695372 134695413 MLT2A1 477 - 386 427 211076 41 chain 8023 chr11 135006516 + 134695413 134695504 MLT2A1 477 - 386 477 170926 91 chain 22933 chr11 135006516 + 134723209 134723489 AluSp 311 + 10 292 115944 121 0 1 149 0 1 10 chain 116632 chr11 135006516 + 134761043 134762604 THE1B-int 1605 + 0 1605 32252 66 10 13 226 14 15 112 10 35 46 1 5 19 7 8 4 1 0 133 1 0 21 0 1 69 2 3 179 6 7 231 0 6 202 0 3 201 chain 3915 chr11 135006516 + 134806081 134806127 MER107 203 + 0 46 208635 46 chain 13250 chr11 135006516 + 134808676 134808866 MER107 203 + 0 203 147288 145 1 6 10 6 14 28 chain 3367 chr11 135006516 + 134854952 134855083 LTR34 700 - 416 532 217719 19 30 29 18 1 0 7 25 0 12 5 17 14 chain 2842 chr11 135006516 + 134856544 134856576 MER51E 476 - 402 434 228067 32 chain 212149 chr11 135006516 + 134881084 134883599 L1PA7 6471 - 10 2521 18347 840 1 0 380 14 4 521 0 1 40 0 4 714 0 2 5 chain 109190 chr11 135006516 + 134883599 134884953 L1PA7 6471 + 2516 3902 34269 124 0 1 457 1 5 37 0 19 131 1 9 185 14 13 52 7 11 113 3 0 229 chain 14480 chr11 135006516 + 134918860 134919189 THE1D 372 - 40 372 142952 80 8 14 13 22 19 13 26 28 79 51 49 37 chain 76324 chr11 135006516 + 134935059 134935946 L1PA4 6152 - 0 887 45302 138 1 8 6 7 0 735 chain 175230 chr12 133851895 + 62420 64439 SVA_E 1901 - 0 1886 21430 14 1 0 930 126 0 34 3 0 87 1 0 19 1 0 672 1 0 130 chain 9311 chr12 133851895 + 63365 63491 SVA_E 1901 - 642 769 79744 37 0 1 89 chain 5065 chr12 133851895 + 69583 69644 L1P1 4361 - 1338 1399 194482 61 chain 42367 chr12 133851895 + 69650 70158 L1PA6 6164 + 5652 6162 66191 494 0 1 5 0 1 9 chain 3770 chr12 133851895 + 79512 79585 MIR 256 - 120 210 210808 31 20 37 22 chain 112991 chr12 133851895 + 145764 147095 L1P1 4361 - 20 1348 33382 12 2 1 23 1 0 157 1 0 1135 chain 5392 chr12 133851895 + 147382 147443 L1P1 4361 + 2962 3023 191063 61 chain 215109 chr12 133851895 + 169342 172763 L1PB1 5432 + 2355 5426 18156 77 0 1 6 1 0 60 15 20 69 0 1 101 5 6 37 0 1 99 5 1 366 8 6 87 13 12 59 0 1 8 1 0 359 1 0 230 10 8 15 0 3 455 0 6 16 1 2 82 0 1 78 3 0 36 0 1 49 1 0 41 364 0 242 2 0 94 3 43 10 1 0 12 2 0 3 2 0 9 3 1 51 2 1 10 6 5 44 1 0 21 22 11 14 11 8 12 2 0 24 1 0 23 1 0 11 1 0 15 1 0 7 chain 38049 chr12 133851895 + 173110 173573 LTR2 463 + 0 463 72059 207 1 0 153 14 15 88 chain 5908 chr12 133851895 + 219204 219273 LTR18B 584 - 191 260 186106 69 chain 46407 chr12 133851895 + 220999 221622 LTR71B 605 - 0 605 61682 200 0 1 50 1 2 186 0 1 14 3 0 5 3 0 5 4 0 5 12 0 87 1 2 47 chain 3561 chr12 133851895 + 277673 277713 MADE1 96 + 2 42 214309 40 chain 24832 chr12 133851895 + 293654 293942 AluY 311 + 20 300 105711 112 0 1 154 9 0 13 chain 83800 chr12 133851895 + 296399 297788 LTR12C 1709 - 14 1709 41988 68 1 0 75 101 0 10 30 131 66 1 0 4 77 31 82 11 4 9 24 0 12 0 166 27 2 43 119 0 118 349 0 43 37 9 0 12 0 9 196 13 30 54 chain 35654 chr12 133851895 + 343019 344100 MER41B 635 + 0 635 75331 71 1 0 55 7 3 83 133 34 110 1 2 4 1 0 42 0 1 52 22 23 30 352 4 28 40 44 49 chain 77999 chr12 133851895 + 344539 345631 MER11A 1151 + 0 1151 44513 55 0 99 76 1 0 54 19 10 146 5 6 92 0 1 145 5 6 120 0 26 26 43 0 24 18 0 34 0 1 60 6 7 163 chain 7360 chr12 133851895 + 353405 353532 MSTD 398 + 0 131 175030 34 0 1 33 25 28 35 chain 472473 chr12 133851895 + 407152 412829 L1PA7 6471 + 741 6469 7956 420 1 0 679 9 12 256 0 1 234 2 1 117 0 6 229 5 12 178 0 4 460 0 3 216 0 1 216 0 2 430 3 0 110 0 3 206 0 5 65 0 2 589 0 3 49 1 0 188 0 1 182 0 3 100 4 5 165 0 2 99 0 2 361 0 8 103 chain 516508 chr12 133851895 + 451973 458082 L1PA6 6164 + 0 6162 5530 103 0 1 58 1 2 72 0 2 157 1 0 122 0 2 48 1 0 48 11 26 69 0 1 76 0 17 342 0 2 1186 1 0 263 1 2 111 4 7 131 2 1 335 0 1 5 0 1 11 2 1 304 0 4 287 4 1 152 1 2 415 0 4 138 1 2 112 1 0 880 0 3 552 0 3 96 1 0 4 chain 27764 chr12 133851895 + 460336 460656 L1PA7 6471 - 110 430 93822 320 chain 529176 chr12 133851895 + 479780 485884 L1PA5 6144 - 0 6141 4277 34 3 0 721 0 3 91 0 1 4 8 15 237 0 3 134 0 4 553 0 8 992 0 5 82 10 18 528 1 0 330 0 4 5 0 3 62 0 1 468 3 1 389 0 4 125 3 0 249 6 1 319 0 1 7 1 0 739 chain 6852 chr12 133851895 + 506272 506348 AluSg7 307 + 15 91 178562 76 chain 40868 chr12 133851895 + 507111 508334 Tigger1 2417 - 185 938 68067 15 2 4 16 9 15 127 27 10 98 0 2 156 0 3 48 611 148 33 3 0 78 chain 10290 chr12 133851895 + 514277 514554 L1MB8 1703 + 1430 1658 159177 5 2 0 110 0 1 19 122 74 19 chain 26873 chr12 133851895 + 598143 598495 L1PA8 5853 + 5506 5847 96728 58 1 0 114 2 1 15 7 0 46 2 1 19 1 0 87 chain 11626 chr12 133851895 + 631445 631723 L1MB3 1562 + 1205 1454 153788 35 4 7 11 1 0 48 18 21 24 1 0 24 13 8 38 1 0 4 33 8 5 2 0 16 chain 36429 chr12 133851895 + 687079 687523 LTR2 463 + 0 463 74327 162 0 21 6 1 0 123 2 1 150 chain 24951 chr12 133851895 + 750724 751028 AluSc8 310 + 0 302 105056 30 4 0 93 1 0 9 0 3 167 chain 22822 chr12 133851895 + 764802 765073 AluSz 310 + 6 277 116486 271 chain 20130 chr12 133851895 + 786923 787227 AluSp 311 + 0 297 126746 20 4 9 8 11 0 95 1 0 42 14 14 109 chain 11790 chr12 133851895 + 806402 806576 LTR23 429 - 160 311 153093 126 23 0 25 chain 50475 chr12 133851895 + 807090 807676 LTR10C 591 + 0 591 58661 123 0 1 278 0 1 106 1 3 34 0 1 44 chain 36192 chr12 133851895 + 817098 817502 L1PA5 6144 - 0 410 74638 11 1 7 392 chain 20994 chr12 133851895 + 827714 827984 AluY 311 + 11 297 123937 12 0 3 100 1 2 136 0 12 21 chain 12980 chr12 133851895 + 841916 842064 L1PA5 6144 + 5989 6137 148310 148 chain 22195 chr12 133851895 + 867536 867773 AluYb8 318 - 2 239 119374 237 chain 5218 chr12 133851895 + 871539 871601 MER2 342 - 148 210 192839 62 chain 3794 chr12 133851895 + 872772 872813 MER44B 551 - 442 483 210478 41 chain 24329 chr12 133851895 + 873525 873820 AluSp 311 + 6 302 108493 126 1 0 131 0 2 37 chain 2985 chr12 133851895 + 928666 928710 Tigger4a 237 + 95 140 225348 33 1 2 10 chain 20732 chr12 133851895 + 946188 946444 MER57A1 433 - 0 267 124849 233 0 11 23 chain 3114 chr12 133851895 + 952984 953042 MER5A1 166 + 104 163 222674 13 11 12 34 chain 28986 chr12 133851895 + 954056 954360 AluYa5 310 - 6 310 89061 304 chain 126661 chr12 133851895 + 958740 960146 L1PA4 6152 - 0 1413 28902 10 0 6 835 1 0 548 0 2 12 chain 13675 chr12 133851895 + 1001243 1001396 L1PA4 6152 - 1 153 145689 17 1 0 135 chain 20386 chr12 133851895 + 1028640 1028932 AluSz6 309 + 11 298 125944 48 4 0 53 0 1 12 31 29 144 chain 5259 chr12 133851895 + 1030919 1030982 L1MB2 1706 + 910 973 192418 63 chain 24422 chr12 133851895 + 1037395 1037698 AluSp 311 + 0 297 107956 129 6 0 168 chain 6886 chr12 133851895 + 1043668 1043776 Tigger4b 360 + 222 338 178307 75 8 17 18 1 0 6 chain 22657 chr12 133851895 + 1056214 1056486 AluSp 311 + 4 276 117290 272 chain 23971 chr12 133851895 + 1080921 1081180 AluYf4 310 - 18 277 110505 259 chain 5803 chr12 133851895 + 1088834 1088902 MLT1B 390 + 280 348 187118 68 chain 4275 chr12 133851895 + 1092484 1092559 MLT1B 390 - 42 118 203541 29 16 17 30 chain 22295 chr12 133851895 + 1115127 1115402 AluSg7 307 - 13 287 118932 152 10 11 67 2 0 44 chain 14876 chr12 133851895 + 1132084 1132262 THE1C 375 + 153 335 141695 28 0 1 19 0 3 131 chain 9669 chr12 133851895 + 1139933 1140052 Tigger3a 397 + 142 291 162253 108 0 30 11 chain 3617 chr12 133851895 + 1169210 1169329 THE1A 353 - 0 119 126759 23 1 0 15 1 2 79 chain 32828 chr12 133851895 + 1169353 1169713 L1PA3long 6157 - 9 369 79493 360 chain 4833 chr12 133851895 + 1169713 1169872 THE1A 353 - 119 277 126759 36 1 0 88 1 0 6 0 1 27 chain 7190 chr12 133851895 + 1182850 1182937 Tigger3b 1229 - 954 1041 176143 87 chain 27563 chr12 133851895 + 1189656 1190078 THE1A 353 + 0 351 94459 110 1 0 165 70 0 76 chain 24073 chr12 133851895 + 1223178 1223486 AluSc5 308 - 10 308 109915 12 11 0 176 1 2 108 chain 122281 chr12 133851895 + 1253441 1256554 L1PB1 5432 - 10 2231 30286 18 1 0 11 1 0 13 3 0 5 0 2 27 25 20 7 1 0 11 11 5 7 3 0 15 1 0 45 2 1 13 3 2 51 18 12 13 1 0 6 1 0 16 727 416 37 19 0 37 4 0 9 1 2 12 6 10 147 0 4 176 4 5 175 2 0 20 0 3 274 0 2 46 18 11 157 0 1 136 547 1 115 0 10 115 chain 45999 chr12 133851895 + 1255787 1256324 L1PA4 6152 - 0 534 62042 6 4 0 142 2 3 383 chain 29157 chr12 133851895 + 1288662 1288972 AluYa5 310 - 0 310 88277 310 chain 6268 chr12 133851895 + 1308239 1308307 MSTA 426 - 340 408 183013 68 chain 6887 chr12 133851895 + 1308316 1308394 MSTA 426 - 330 408 178291 78 chain 8213 chr12 133851895 + 1308403 1308499 MSTA 426 - 330 426 169873 96 chain 3531 chr12 133851895 + 1317019 1317068 MER53 195 + 0 50 214855 30 1 2 18 chain 5464 chr12 133851895 + 1331169 1331235 Tigger3a 397 - 134 200 190375 66 chain 30052 chr12 133851895 + 1352071 1352389 AluYb8 318 + 0 318 84639 318 chain 75195 chr12 133851895 + 1364113 1365376 L1PA7 6471 - 1 967 45928 12 0 2 111 1 0 28 4 3 348 1 0 166 305 4 92 6 9 70 3 5 116 chain 13008 chr12 133851895 + 1377776 1377926 AluY 311 + 127 277 148210 150 chain 20888 chr12 133851895 + 1412207 1412502 Tigger1 2417 - 183 477 124328 40 1 0 128 9 10 64 1 0 52 chain 56110 chr12 133851895 + 1425757 1426726 L1PA7 6471 + 5818 6466 55065 282 321 0 197 0 3 159 3 0 7 chain 41042 chr12 133851895 + 1450492 1450987 L1PA6 6164 + 5667 6161 67840 29 0 2 177 0 1 277 4 0 8 chain 28880 chr12 133851895 + 1455826 1456127 AluYb9 318 + 0 301 89542 301 chain 17752 chr12 133851895 + 1470381 1470577 L1PA4 6152 + 5948 6144 133556 196 chain 3581 chr12 133851895 + 1480453 1480496 L1MB1 2102 - 95 138 213957 43 chain 24252 chr12 133851895 + 1497245 1497534 AluYc3 301 + 0 294 108934 113 1 2 142 0 4 33 chain 6374 chr12 133851895 + 1519181 1519262 MER2 342 - 127 211 182212 31 0 2 46 0 1 4 chain 6483 chr12 133851895 + 1555172 1555250 MLT1A0 366 - 256 335 181375 30 0 1 48 chain 43600 chr12 133851895 + 1557899 1558508 THE1C-int 1605 + 975 1605 64684 46 0 2 78 54 53 10 1 2 349 0 18 62 0 1 9 chain 20763 chr12 133851895 + 1558508 1558831 THE1C 375 + 0 363 124743 117 1 0 58 38 74 65 3 8 41 chain 25194 chr12 133851895 + 1623082 1623383 AluYk4 311 + 0 296 103774 64 2 0 58 3 0 174 chain 3324 chr12 133851895 + 1653028 1653144 L1MC4a 1092 - 309 412 218507 30 59 47 22 1 0 4 chain 33958 chr12 133851895 + 1658283 1658767 MSTA-int 1630 + 2 482 77681 10 1 2 61 13 5 326 22 25 51 chain 7359 chr12 133851895 + 1665676 1665768 L1MB3 1562 - 262 353 175038 42 1 0 49 chain 25130 chr12 133851895 + 1666886 1667190 AluSp 311 - 5 311 104127 26 0 2 278 chain 7431 chr12 133851895 + 1707463 1707595 L1MB2 1706 + 877 1010 174565 69 29 30 34 chain 3458 chr12 133851895 + 1746316 1746433 L1MB7 1623 - 136 229 216016 8 1 0 28 4 0 7 53 34 16 chain 24992 chr12 133851895 + 1752531 1752830 AluSp 311 - 13 310 104844 80 1 0 79 2 1 137 chain 24913 chr12 133851895 + 1774884 1775184 AluSp 311 - 12 311 105255 29 2 1 269 chain 24422 chr12 133851895 + 1819205 1819595 LTR12F 595 + 65 595 107961 35 0 142 16 71 5 25 0 64 243 chain 26570 chr12 133851895 + 1819614 1819930 HERV9-int 5642 + 18 332 97761 65 1 0 178 1 0 71 chain 307035 chr12 133851895 + 1820964 1824664 HERV9-int 5642 - 844 4530 13130 79 0 1 79 0 2 486 0 1 48 0 30 857 1 5 492 69 12 105 0 3 940 0 48 4 50 0 154 7 11 329 chain 26714 chr12 133851895 + 1824862 1825316 LTR12F 595 + 0 595 97278 25 0 1 56 5 148 16 0 23 6 90 0 9 0 64 247 chain 4923 chr12 133851895 + 1830682 1830737 MER4A1 472 + 417 472 196010 55 chain 289529 chr12 133851895 + 1842794 1846074 L1PA4 6152 - 20 3298 14050 247 1 0 175 2 0 587 0 9 307 0 8 849 0 1 266 0 1 374 20 3 140 1 0 311 chain 6528 chr12 133851895 + 1869760 1869865 L1MB8 1703 - 202 305 181021 66 14 12 25 chain 6865 chr12 133851895 + 1923607 1923706 LTR12F 595 - 459 595 178462 13 0 27 6 1 11 79 chain 118107 chr12 133851895 + 1926627 1927939 SVA_D 2077 + 14 2065 31771 11 1 0 3 1 0 512 0 40 159 0 37 22 0 664 603 chain 18729 chr12 133851895 + 1927966 1928173 SVA_B 1603 + 1398 1603 130882 199 2 0 6 chain 5325 chr12 133851895 + 1933418 1933549 MER5A1 166 - 30 164 191778 42 53 56 36 chain 250852 chr12 133851895 + 2009777 2013688 L1MA3 4352 + 499 4352 16189 135 0 1 131 32 33 27 15 16 20 1 0 6 2 0 8 5 4 200 6 5 11 1 0 4 0 1 9 9 8 21 21 25 36 0 1 6 1 0 30 0 1 26 22 24 240 1 0 103 4 1 19 1 0 14 6 0 84 21 0 10 26 33 46 2 1 63 77 81 216 4 1 113 1 0 10 3 4 180 0 1 4 6 0 540 7 9 5 2 0 256 3 0 65 19 18 7 0 1 430 3 0 59 1 2 72 22 27 40 0 6 7 19 13 27 39 18 66 1 0 69 10 9 24 1 0 6 1 0 29 1 0 11 13 7 17 chain 11496 chr12 133851895 + 2049628 2049758 L1P2 5180 - 3203 3333 154310 130 chain 330772 chr12 133851895 + 2050954 2055176 L1PA8A 6298 + 2173 6287 12172 327 16 16 651 5 1 37 1 0 491 0 10 163 4 3 482 0 4 90 1 4 540 0 1 14 2 1 367 0 1 113 1 4 77 0 2 279 104 0 130 1 0 220 25 5 81 chain 13923 chr12 133851895 + 2105685 2105927 MER30 238 - 0 238 144847 22 1 0 4 0 1 15 3 0 38 0 6 52 14 5 49 20 22 24 chain 25702 chr12 133851895 + 2109920 2110219 AluSq10 312 + 0 299 101283 299 chain 4277 chr12 133851895 + 2130867 2130921 MLT1A0 366 - 72 135 203513 46 0 9 8 chain 29770 chr12 133851895 + 2152805 2153120 AluYb9 318 - 3 318 85576 315 chain 20214 chr12 133851895 + 2172319 2172603 AluSc5 308 - 15 297 126488 14 10 7 121 0 3 7 12 9 83 0 1 37 chain 53208 chr12 133851895 + 2187867 2188456 L1PA4 6152 + 5563 6152 56889 589 chain 22820 chr12 133851895 + 2198918 2199207 AluY 311 + 0 293 116492 108 0 5 19 0 1 152 2 0 8 chain 171923 chr12 133851895 + 2211755 2213855 L1PA7 6471 - 4 2119 21825 114 1 2 102 2 1 545 0 1 4 8 11 59 1 5 483 1 0 79 0 1 193 0 3 192 3 7 313 chain 4492 chr12 133851895 + 2233023 2233085 MIR 256 + 142 201 200874 5 3 0 54 chain 556861 chr12 133851895 + 2239469 2245487 L1PA2 6032 - 1 6031 622 1759 0 1 4103 0 11 156 chain 28141 chr12 133851895 + 2313215 2313518 L1PA2 6032 - 599 902 92495 303 chain 53823 chr12 133851895 + 2313520 2314116 L1PA2 6032 + 5430 6032 56465 579 0 6 17 chain 21587 chr12 133851895 + 2366510 2366806 MER1B 344 - 9 314 121819 49 13 20 107 1 3 126 chain 13084 chr12 133851895 + 2390138 2390299 L1PA4 6152 - 9 171 147906 140 1 2 20 chain 12273 chr12 133851895 + 2402663 2402838 MER30 238 + 39 229 151103 66 10 28 64 3 0 32 chain 8628 chr12 133851895 + 2452611 2452763 MER53 195 + 33 186 167596 47 3 0 6 19 27 12 4 0 61 chain 3268 chr12 133851895 + 2514631 2514669 L1MD2 1676 - 180 218 219618 38 chain 6255 chr12 133851895 + 2546944 2547067 HAL1-2a_MD 234 - 16 209 183135 20 3 88 17 21 0 32 1 7 29 chain 3649 chr12 133851895 + 2547107 2547236 HAL1-2a_MD 234 - 33 137 212818 32 4 13 8 2 0 18 49 17 16 chain 23712 chr12 133851895 + 2580849 2581134 AluSg7 307 - 15 297 111969 11 5 0 102 0 1 46 0 1 121 chain 6712 chr12 133851895 + 2603193 2603277 L1PA8 5853 - 0 84 179597 84 chain 29349 chr12 133851895 + 2674352 2674662 AluYb8 318 + 0 311 87301 108 0 1 202 chain 19195 chr12 133851895 + 2772422 2772704 L1PB2 3958 + 3493 3770 129538 40 6 5 76 1 0 67 2 1 73 4 2 13 chain 13266 chr12 133851895 + 2778412 2778602 MER30 238 - 0 219 147226 45 0 3 23 0 6 23 1 0 10 13 34 75 chain 23464 chr12 133851895 + 2780185 2780478 AluSc5 308 - 14 308 113299 15 8 9 270 chain 552227 chr12 133851895 + 2808663 2814805 L1PA4 6152 + 1 6151 1167 459 6 0 580 1 0 1663 0 1 480 0 1 1552 0 8 365 0 1 193 0 4 843 chain 8164 chr12 133851895 + 2819076 2819185 L1MB2 1706 + 1408 1516 170145 53 2 1 54 chain 5506 chr12 133851895 + 2843096 2843159 L1P4 1494 - 1191 1254 189975 63 chain 246242 chr12 133851895 + 2855354 2858303 L1PA7 6471 - 6 2959 16432 145 1 0 11 7 8 677 0 3 719 0 2 258 0 2 135 0 3 5 3 0 181 1 0 306 0 1 207 22 0 10 7 26 254 chain 84510 chr12 133851895 + 2866935 2868169 L1PB1 5432 + 4224 5427 41710 309 0 2 91 3 0 79 12 14 136 0 1 238 2 1 8 1 2 9 1 0 23 1 0 10 1 0 8 9 6 7 2 0 52 2 1 15 1 0 43 21 17 4 1 0 11 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 34947 chr12 133851895 + 2879856 2880244 L1PA7 6471 + 6075 6463 76269 388 chain 11093 chr12 133851895 + 2890344 2890470 HERVK9-int 4720 + 4433 4559 155831 126 chain 11761 chr12 133851895 + 2890471 2890606 MER9a3 513 - 376 513 153217 122 0 2 13 chain 23996 chr12 133851895 + 2920193 2920486 AluY 311 + 0 293 110350 10 1 0 122 10 11 150 chain 23062 chr12 133851895 + 2949686 2949955 AluY 311 + 16 286 115340 115 1 2 153 chain 6087 chr12 133851895 + 2960355 2960488 Tigger3c 601 - 297 427 184526 16 4 5 28 37 33 48 chain 4753 chr12 133851895 + 2969140 2969196 HY4 93 + 37 93 197874 56 chain 4754 chr12 133851895 + 2970497 2970583 L1PB1 5432 + 5346 5427 197860 23 8 7 15 1 0 13 1 0 18 2 0 5 chain 26938 chr12 133851895 + 2992678 2992981 AluSp 311 - 7 311 96496 129 0 1 174 chain 4313 chr12 133851895 + 3007723 3007808 MER58B 340 - 96 187 203063 42 21 27 22 chain 22726 chr12 133851895 + 3038246 3038493 AluYg6 310 + 44 291 116953 247 chain 17580 chr12 133851895 + 3047691 3047962 AluJb 308 + 12 298 134053 40 14 28 24 2 0 102 1 2 58 6 8 24 chain 4439 chr12 133851895 + 3063411 3063493 U6 107 - 6 96 201459 21 7 17 26 4 2 24 chain 25123 chr12 133851895 + 3064247 3064545 AluSp 311 - 12 310 104160 298 chain 25956 chr12 133851895 + 3077247 3077551 AluSp 311 - 7 311 100184 304 chain 24682 chr12 133851895 + 3118322 3118616 AluSq10 312 + 11 303 106541 122 2 0 170 chain 8093 chr12 133851895 + 3156718 3156849 MER1B 344 + 215 344 170529 50 19 17 62 chain 3102 chr12 133851895 + 3173033 3173066 LTR8 732 + 653 686 222881 33 chain 10066 chr12 133851895 + 3176803 3176935 MER4D1 891 + 752 884 160248 28 0 2 6 2 0 96 chain 101813 chr12 133851895 + 3204032 3205155 SVA_F 1814 - 0 1479 36312 637 2 49 127 1 0 35 10 123 10 0 197 301 chain 22979 chr12 133851895 + 3270103 3270398 AluSp 311 + 0 293 115723 8 1 0 166 4 3 116 chain 14996 chr12 133851895 + 3328837 3329025 L1PA7 6471 + 6274 6470 141330 24 2 0 71 0 8 79 0 2 12 chain 12300 chr12 133851895 + 3355140 3355448 MSTA 426 - 11 337 151010 24 1 0 110 119 113 11 5 9 28 0 21 10 chain 26565 chr12 133851895 + 3439596 3439951 THE1C 375 + 0 375 97786 113 0 1 16 1 7 40 0 1 26 15 27 144 chain 44066 chr12 133851895 + 3440917 3441449 MLT2A2 560 - 28 560 64141 532 chain 4162 chr12 133851895 + 3448570 3448615 MIR 256 + 67 112 205060 45 chain 22250 chr12 133851895 + 3449572 3449839 AluSp 311 - 38 303 119116 141 2 0 124 chain 8239 chr12 133851895 + 3453788 3453983 L1MA8 2339 + 2005 2185 169736 4 1 0 69 0 1 20 3 1 12 61 48 25 chain 16252 chr12 133851895 + 3454017 3454229 L1PA6 6164 - 2 228 137607 139 6 20 67 chain 21954 chr12 133851895 + 3485820 3486139 THE1B 368 + 0 326 120406 13 2 0 156 1 0 29 41 51 77 chain 547465 chr12 133851895 + 3501380 3507397 L1PA3long 6157 - 1 6157 1772 856 1 0 942 0 4 3193 0 2 255 4 132 528 0 4 45 0 1 41 0 1 152 chain 189348 chr12 133851895 + 3509188 3512066 L1PA11 4918 + 2028 4578 20115 49 0 2 110 2 0 5 1 3 50 1 0 133 0 3 329 1 2 149 339 22 122 0 1 117 1 0 31 8 18 59 23 13 203 4 0 375 7 9 106 4 7 238 0 5 138 6 1 28 7 11 25 3 2 13 2 0 67 2 0 10 6 5 19 4 0 9 31 22 9 1 2 4 1 0 13 2 0 11 chain 26507 chr12 133851895 + 3514213 3514550 THE1C 375 - 33 375 98016 31 8 7 100 0 3 19 0 3 179 chain 30408 chr12 133851895 + 3516111 3516486 THE1C 375 - 0 375 83671 26 1 0 162 0 1 186 chain 10628 chr12 133851895 + 3522629 3522757 Tigger3b 1229 - 715 843 157700 128 chain 14504 chr12 133851895 + 3531539 3531769 LTR2 463 - 0 230 142878 24 1 0 28 1 0 13 16 17 110 10 11 27 chain 394724 chr12 133851895 + 3532015 3537012 Harlequin-int 5206 - 6 5080 10288 40 4 7 142 0 1 226 0 4 494 2 0 5 0 2 316 0 1 598 11 12 26 35 40 85 0 11 619 8 0 9 0 2 130 0 1 64 0 1 61 4 11 24 1 2 102 3 14 214 2 0 646 2 0 265 0 39 87 0 4 39 1 0 174 1 0 199 2 1 106 4 0 76 1 0 11 5 10 51 9 10 48 3 4 18 1 0 5 1 0 17 chain 5158 chr12 133851895 + 3574545 3574632 MER101 471 + 379 467 193470 11 14 15 62 chain 568832 chr12 133851895 + 3608361 3614394 L1HS 6032 - 0 6032 5 157 1 0 5875 chain 5255 chr12 133851895 + 3624485 3624544 MER5A 189 + 14 73 192458 59 chain 13023 chr12 133851895 + 3624548 3624691 L1PA4 6152 + 6008 6151 148166 143 chain 45752 chr12 133851895 + 3625822 3626463 LTR71B 605 + 0 605 62274 114 0 4 7 5 1 15 5 0 86 6 5 112 0 1 4 34 3 253 chain 44750 chr12 133851895 + 3633460 3634077 LTR71B 605 + 0 603 63334 135 19 14 47 0 2 144 16 4 66 9 10 181 chain 32591 chr12 133851895 + 3653606 3654066 LTR46 455 - 0 455 79866 41 18 14 57 0 1 38 1 0 59 0 3 42 9 6 5 0 1 19 2 0 169 chain 21129 chr12 133851895 + 3730574 3730841 AluSg7 307 + 37 307 123454 93 1 2 144 0 2 29 chain 29080 chr12 133851895 + 3741128 3741522 MSTA 426 + 7 426 88639 144 2 8 46 4 5 26 2 0 60 1 21 109 chain 36915 chr12 133851895 + 3746584 3747065 LTR10D 510 + 1 503 73639 59 17 27 14 1 0 161 2 0 70 0 14 157 chain 23100 chr12 133851895 + 3758150 3758404 L1PA4 6152 + 5893 6149 115144 56 0 2 198 chain 241252 chr12 133851895 + 3797737 3801113 L1PA13 3608 - 120 3495 16711 20 1 0 20 11 7 45 3 1 4 0 1 54 2 1 61 5 3 78 0 1 32 1 0 17 15 0 11 1 0 78 0 14 10 5 0 416 0 1 321 1 44 300 4 0 13 7 2 823 1 11 52 1 0 149 1 0 32 4 6 20 6 9 9 0 3 89 0 1 41 1 2 56 7 5 91 1 0 7 13 11 18 2 0 17 1 0 5 15 15 16 2 0 16 1 0 14 8 0 115 0 1 4 8 6 71 28 17 24 3 0 12 2 1 21 11 8 22 chain 4368 chr12 133851895 + 3802675 3802724 L1PA13 3608 - 2926 2975 202350 49 chain 16650 chr12 133851895 + 3802725 3802999 L1PA13 3608 - 2977 3237 136529 99 1 0 16 2 0 18 2 0 17 1 0 8 16 12 16 4 2 15 1 0 13 1 0 44 chain 14538 chr12 133851895 + 3864621 3864861 MER1B 344 - 5 344 142770 77 5 0 42 4 0 62 0 115 13 20 13 17 chain 23098 chr12 133851895 + 3867728 3868085 THE1B 368 - 0 368 115154 56 7 6 56 36 49 32 1 0 169 chain 11862 chr12 133851895 + 3868736 3868903 MSTA 426 + 0 190 152775 107 14 37 46 chain 5087 chr12 133851895 + 3888481 3888722 L1ME1 1623 - 359 593 194208 29 163 156 49 chain 5695 chr12 133851895 + 3895516 3895589 L1MB1 2102 - 752 825 188149 73 chain 74166 chr12 133851895 + 3896758 3897673 L1PA7 6471 + 5578 6469 46423 19 19 0 24 1 0 89 1 0 443 1 0 212 3 4 88 3 0 12 chain 6786 chr12 133851895 + 3955504 3955596 L1MA4 2864 + 30 123 179065 5 1 0 24 1 0 13 0 3 48 chain 25714 chr12 133851895 + 3955654 3955951 AluY 311 + 14 311 101237 297 chain 523862 chr12 133851895 + 3960305 3966444 L1PA6 6164 + 0 6156 4781 509 5 4 322 0 1 452 1 0 135 8 13 123 4 5 164 1 0 230 1 0 373 1 2 851 5 6 9 1 0 23 0 1 321 6 12 140 2 0 661 0 8 349 1 0 103 5 0 129 0 10 45 2 0 166 0 5 143 1 0 272 7 0 357 0 1 211 chain 22361 chr12 133851895 + 4013215 4013494 AluSg7 307 - 13 296 118666 14 0 3 145 0 1 120 chain 23406 chr12 133851895 + 4018370 4018720 AluY 311 + 0 311 113615 126 22 0 48 49 0 12 0 32 93 chain 17658 chr12 133851895 + 4025476 4025830 THE1B 368 + 8 367 133816 94 32 33 42 22 16 11 6 10 11 19 24 51 0 1 5 1 0 4 1 2 55 chain 28253 chr12 133851895 + 4058600 4059019 LOR1b 457 + 18 457 92098 13 1 11 104 0 2 29 5 0 17 42 52 139 0 3 69 chain 25853 chr12 133851895 + 4067658 4068006 THE1A 353 - 0 353 100639 151 1 0 30 6 12 49 1 0 65 0 1 45 chain 25875 chr12 133851895 + 4079015 4079318 AluSc 308 - 5 308 100549 303 chain 14205 chr12 133851895 + 4097225 4097444 L1MA4 2864 + 2378 2596 143860 101 31 30 87 chain 24471 chr12 133851895 + 4117059 4117344 AluSg7 307 - 10 296 107699 165 0 1 120 chain 40733 chr12 133851895 + 4127706 4128157 LTR7 482 + 0 482 68266 264 0 31 187 chain 261481 chr12 133851895 + 4128159 4131255 HERVH-int 3825 + 0 3120 15617 212 0 11 309 5 0 38 1 0 10 1 0 19 1 0 5 28 0 15 0 37 42 2 1 57 0 1 6 0 2 14 0 5 439 14 0 218 0 1 243 4 31 440 7 5 394 7 0 180 3 0 351 0 3 31 chain 40580 chr12 133851895 + 4132411 4132860 LTR7 482 + 0 482 68468 91 0 3 160 0 30 198 chain 44748 chr12 133851895 + 4185600 4186133 L1PA10 4194 + 3547 4082 63336 19 4 5 134 0 1 376 chain 4599 chr12 133851895 + 4224059 4224126 L1MB3 1562 - 38 104 199640 53 0 2 5 3 0 6 chain 29607 chr12 133851895 + 4224302 4224733 MER1A 529 + 92 519 86190 333 48 44 50 chain 78776 chr12 133851895 + 4247556 4248455 L1PA5 6144 - 0 899 44157 899 chain 22504 chr12 133851895 + 4285023 4285285 AluSg7 307 + 17 280 118013 114 0 1 148 chain 93903 chr12 133851895 + 4288955 4289986 L1PA3long 6157 - 5 1036 38382 1031 chain 21992 chr12 133851895 + 4304169 4304422 AluSp 311 + 5 259 120263 209 0 1 44 chain 24734 chr12 133851895 + 4323770 4324062 AluY 311 + 11 307 106255 35 1 7 70 2 0 184 chain 6759 chr12 133851895 + 4338601 4338682 LTR61 567 + 464 545 179254 81 chain 38982 chr12 133851895 + 4428657 4429484 LTR10F 562 - 0 562 70764 192 8 24 47 2 1 48 0 4 13 3 34 96 315 0 103 chain 9986 chr12 133851895 + 4447728 4447895 L1MA2 4263 + 1198 1372 160649 71 15 22 26 1 0 22 7 8 25 chain 482886 chr12 133851895 + 4450451 4455926 L1PA5 6144 + 0 6139 7627 89 0 525 466 0 3 1295 0 3 205 0 1 241 6 10 406 0 3 437 0 2 288 1 111 258 0 8 940 0 4 366 0 1 477 chain 38508 chr12 133851895 + 4481086 4481505 L1PA2 6032 + 5613 6032 71425 419 chain 15099 chr12 133851895 + 4495681 4495919 L1PA16 3655 + 3407 3619 141038 171 3 0 8 1 0 5 22 5 7 5 0 16 chain 21825 chr12 133851895 + 4514099 4514360 THE1B-int 1605 + 1340 1600 120924 95 1 0 165 chain 26530 chr12 133851895 + 4514365 4514733 THE1B 368 + 0 368 97932 15 2 0 22 0 5 130 8 6 121 16 15 54 chain 17407 chr12 133851895 + 4544303 4544698 MER1B 344 + 0 344 134480 18 54 47 18 55 20 113 4 0 52 28 23 53 chain 18828 chr12 133851895 + 4567787 4568042 AluSq2 311 + 8 261 130585 126 31 29 98 chain 18630 chr12 133851895 + 4607830 4608122 MER1B 344 - 0 280 131136 59 33 20 172 11 12 17 chain 32179 chr12 133851895 + 4610623 4611060 MER1A 529 + 93 528 80565 350 1 0 4 23 28 29 6 0 24 chain 553951 chr12 133851895 + 4618061 4624067 L1PA2 6032 + 0 6032 958 157 0 11 871 0 3 987 0 6 534 0 1 1905 2 0 1007 1 0 116 0 1 285 0 7 141 chain 10291 chr12 133851895 + 4624138 4624256 L1PA3long 6157 + 6039 6156 159176 113 1 0 4 chain 13490 chr12 133851895 + 4632507 4632653 L1PA5 6144 + 5515 5661 146386 146 chain 42512 chr12 133851895 + 4632653 4633131 L1PA5 6144 + 5662 6140 65996 478 chain 9217 chr12 133851895 + 4641079 4641181 MER83 447 + 0 102 164472 102 chain 12769 chr12 133851895 + 4641183 4641372 MER30 238 + 0 238 149182 15 7 25 39 7 38 121 chain 4097 chr12 133851895 + 4673324 4673434 L1MA4 2864 + 2716 2809 205986 8 9 0 14 36 28 43 chain 7397 chr12 133851895 + 4680887 4681008 MER33 330 + 201 330 174786 82 20 28 19 chain 21500 chr12 133851895 + 4691338 4691604 AluSp 311 + 11 282 122146 41 9 8 194 0 6 22 chain 31891 chr12 133851895 + 4694595 4694948 L1PA4 6152 + 5792 6146 81021 246 0 1 107 chain 4732 chr12 133851895 + 4698869 4698922 L1MA2 4263 - 220 273 198135 53 chain 6960 chr12 133851895 + 4727845 4727924 MER20 218 - 139 218 177744 79 chain 34404 chr12 133851895 + 4731205 4731797 L1PREC2 3366 + 2475 3033 77051 9 0 5 35 0 1 226 4 0 48 9 8 43 1 0 4 3 0 13 29 21 17 6 1 15 3 1 28 2 0 8 1 0 5 19 8 35 6 4 23 chain 33627 chr12 133851895 + 4748595 4749334 L1PA6 6164 - 4 417 78203 6 3 0 7 1 0 347 322 0 53 chain 506246 chr12 133851895 + 4781112 4787459 L1PA7 6471 + 2 6470 6448 242 0 10 354 0 2 56 0 2 50 7 8 26 1 0 133 8 7 97 5 6 49 2 0 5 0 2 123 0 10 29 0 4 257 0 43 344 7 0 14 0 16 20 0 1 558 13 6 163 1 2 18 0 2 43 0 4 388 0 4 429 0 7 462 1 3 64 0 15 50 1 2 102 0 2 128 1 0 4 0 1 217 0 1 87 10 6 67 1 0 67 4 0 140 1 0 667 3 9 60 1 0 19 0 1 159 0 9 82 2 0 170 8 3 125 0 9 39 5 6 158 chain 55215 chr12 133851895 + 4798465 4799070 SVA_C 1631 - 0 605 55574 605 chain 15566 chr12 133851895 + 4806000 4806205 MER47A 366 - 109 315 139681 63 6 7 136 chain 15486 chr12 133851895 + 4817775 4817974 L1PA3long 6157 + 5978 6157 139938 25 20 0 154 chain 46367 chr12 133851895 + 4829173 4829759 LTR14C 587 - 0 587 61713 143 0 1 91 0 14 85 1 8 90 22 0 45 2 1 88 3 5 16 chain 82256 chr12 133851895 + 4830396 4831365 LTR5_Hs 974 - 0 973 42654 62 1 0 30 2 0 48 8 15 818 chain 23167 chr12 133851895 + 4840021 4840301 AluYc3 301 - 3 301 114827 54 0 17 112 1 2 113 chain 276244 chr12 133851895 + 4856684 4861827 L1MA2 4263 - 150 4232 14859 9 1 0 19 1 3 13 3 0 13 15 14 77 11 9 98 3 0 52 13 10 34 0 1 99 4 3 73 0 1 5 11 8 5 2 0 653 5 6 24 0 6 162 7 5 64 6 3 7 0 1 19 0 2 58 0 4 42 0 1 30 19 18 16 0 1 118 0 53 46 2 0 263 16 5 70 1 4 72 16 17 4 1 0 69 8 7 13 11 9 113 0 3 6 18 24 87 0 4 53 1117 2 7 0 1 61 13 18 21 0 3 238 3 4 23 0 1 55 0 4 27 0 1 329 7 8 119 1 0 19 0 2 111 9 0 15 1 9 55 1 0 21 14 13 14 0 1 59 19 5 86 0 4 38 chain 28155 chr12 133851895 + 4893083 4893508 MER51E 476 - 2 476 92445 59 2 0 6 6 8 10 0 14 111 0 1 8 1 0 9 0 1 14 13 12 55 12 47 119 chain 17234 chr12 133851895 + 4957711 4957908 AluSp 311 - 23 220 134970 197 chain 122521 chr12 133851895 + 4987950 4989524 THE1B-int 1605 - 7 1605 30213 257 8 9 868 7 32 228 10 6 182 1 3 13 chain 28069 chr12 133851895 + 4996060 4996367 AluYf4 310 + 0 307 92757 307 chain 20008 chr12 133851895 + 5034889 5035123 L1PA4 6152 + 5913 6152 127118 228 0 5 6 chain 3121 chr12 133851895 + 5045725 5046002 MER63C 923 + 43 364 222536 24 220 265 24 1 0 8 chain 4696 chr12 133851895 + 5065824 5065965 MIR 256 - 98 234 198568 17 3 0 19 63 61 39 chain 52312 chr12 133851895 + 5112822 5113404 L1PA3long 6157 + 5577 6157 57420 246 0 1 318 3 0 15 chain 81586 chr12 133851895 + 5137854 5138784 L1PA5 6144 + 5205 6140 42931 36 0 1 746 4 8 144 chain 48722 chr12 133851895 + 5214632 5215167 L1PA3long 6157 - 1 535 59934 286 1 0 248 chain 551956 chr12 133851895 + 5225592 5231594 L1PA2 6032 - 0 6029 1194 152 0 1 23 0 1 1460 0 10 155 0 4 4065 0 11 147 chain 27557 chr12 133851895 + 5284704 5285008 L1PA7 6471 - 265 569 94480 304 chain 3346 chr12 133851895 + 5299518 5299642 MER5A 189 + 5 152 218111 33 69 92 22 chain 2765 chr12 133851895 + 5322905 5322934 MIRc 230 - 104 133 229233 29 chain 22099 chr12 133851895 + 5338041 5338397 THE1B 368 - 0 368 119791 75 3 8 76 9 11 26 8 6 62 9 1 36 8 23 44 chain 3375 chr12 133851895 + 5339075 5339114 LTR26B 539 - 500 539 217589 39 chain 67319 chr12 133851895 + 5389978 5390768 L1PA5 6144 - 10 795 49520 328 0 1 36 15 9 411 chain 543290 chr12 133851895 + 5394109 5400118 L1PA3long 6157 - 0 6153 2297 3452 0 5 561 3 0 100 0 1 1132 1 129 521 0 1 95 0 12 144 chain 22506 chr12 133851895 + 5437159 5437421 AluSc5 308 + 43 307 118007 231 1 3 30 chain 139585 chr12 133851895 + 5449157 5450781 L1PA7 6471 + 4835 6470 26206 114 1 0 35 0 1 637 0 8 223 0 3 614 chain 29609 chr12 133851895 + 5475506 5475874 L1PA7 6471 + 6086 6443 86177 109 5 0 229 14 8 11 chain 29866 chr12 133851895 + 5490893 5491280 MLT2A1 477 - 87 477 85227 5 0 2 37 4 0 172 1 5 26 0 1 142 chain 28798 chr12 133851895 + 5503052 5503355 AluYa5 310 + 0 304 89905 108 0 1 195 chain 4653 chr12 133851895 + 5522212 5522272 MADE1 96 + 1 92 199031 42 0 31 18 chain 74457 chr12 133851895 + 5646182 5647093 LTR5_Hs 974 + 0 920 46297 659 0 1 116 7 7 38 0 8 72 0 1 4 1 0 14 chain 94022 chr12 133851895 + 5649604 5650961 L1PB2 3958 - 120 1470 38345 38 26 25 22 2 0 65 8 15 56 1 0 21 0 1 6 5 0 49 22 21 60 4 7 13 2 0 61 4 0 15 1 0 55 2 0 332 1 0 52 6 5 187 0 6 39 4 1 198 chain 54632 chr12 133851895 + 5653584 5654435 L1PB2 3958 + 25 870 55950 27 42 35 18 4 0 3 1 0 27 1 3 8 0 1 28 6 0 5 1 0 47 7 4 24 0 1 33 4 6 165 1 0 198 8 21 5 3 0 36 0 1 149 chain 62101 chr12 133851895 + 5661230 5662195 L1PB1 5432 + 4462 5404 51851 137 0 1 28 2 0 49 17 22 15 1 0 310 0 3 76 1 4 7 5 0 20 1 0 12 1 0 12 8 4 6 2 0 52 2 1 12 8 7 40 1 0 16 3 0 12 7 1 17 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 chain 16302 chr12 133851895 + 5664609 5665306 L1PB1 5432 - 55 634 137476 7 1 0 17 87 76 38 5 4 14 2 1 51 3 1 9 2 0 5 2 0 10 311 214 23 6 5 104 chain 29132 chr12 133851895 + 5692537 5692844 AluYk11 308 + 0 307 88399 307 chain 16262 chr12 133851895 + 5699279 5699488 MER30 238 + 0 236 137577 109 0 30 50 4 1 46 chain 81523 chr12 133851895 + 5749589 5750531 L1PA6 6164 + 5199 6146 42970 119 0 4 166 0 1 657 chain 54466 chr12 133851895 + 5778145 5778852 L1PA10 4194 - 33 747 56054 11 1 0 34 3 0 9 6 5 94 0 8 122 1 0 172 0 1 4 1 0 49 0 4 33 6 3 9 0 4 152 chain 37780 chr12 133851895 + 5788272 5788801 L1PA11 4918 + 3990 4508 72443 337 6 1 65 2 1 9 6 5 41 1 0 22 8 6 11 1 0 20 chain 282746 chr12 133851895 + 5806644 5809926 L1P1 4361 + 4 3303 14488 291 1 0 269 0 9 872 0 4 680 0 1 65 0 2 979 1 2 24 0 1 100 chain 26013 chr12 133851895 + 5820045 5820340 AluY 311 + 0 299 99964 56 0 3 73 0 1 166 chain 33860 chr12 133851895 + 5864587 5864970 L1PA5 6144 - 14 397 77840 383 chain 3215 chr12 133851895 + 5888941 5889204 L1MC4 1079 + 728 973 220654 32 208 190 23 chain 26242 chr12 133851895 + 5927253 5927724 MLT2A1 477 + 0 477 99045 88 0 3 41 2 1 7 0 1 27 9 6 30 9 22 101 2 16 40 79 54 27 0 4 9 chain 442196 chr12 133851895 + 5927731 5935473 HERVL-int 5654 + 8 5654 8989 287 0 1 272 1 196 420 0 1 118 1 2 593 16 0 34 5 6 384 0 1 885 1 11 482 3 0 26 0 1 36 8 11 247 0 16 377 2314 0 779 0 3 18 82 83 41 2 1 20 0 3 45 0 1 245 chain 22866 chr12 133851895 + 5931932 5932286 THE1A 353 - 0 353 116255 18 3 0 5 0 3 85 4 11 29 13 5 86 5 4 18 8 9 80 chain 129611 chr12 133851895 + 5932286 5933898 THE1A-int 1579 - 0 1579 28175 66 47 0 4 1 0 269 2 15 723 1 0 385 0 4 68 2 1 44 chain 25340 chr12 133851895 + 5933910 5934241 THE1A 353 - 12 353 103021 46 0 11 24 0 1 148 1 0 86 3 2 23 chain 9312 chr12 133851895 + 5935474 5935587 MLT2A2 560 + 1 114 164005 113 chain 25239 chr12 133851895 + 5946492 5946784 L1PA2 6032 - 0 293 103541 14 2 0 38 0 2 156 0 1 82 chain 39386 chr12 133851895 + 5946784 5947219 L1P1 4361 + 2887 3322 70187 435 chain 11203 chr12 133851895 + 5971785 5971942 THE1C 375 + 16 175 155411 124 11 13 22 chain 52297 chr12 133851895 + 5985510 5986154 L1PA7 6471 + 5824 6467 57431 314 0 1 43 0 1 125 1 2 148 4 0 9 chain 15684 chr12 133851895 + 5986835 5987072 MER1B 344 - 5 249 139318 50 10 16 13 2 7 37 4 0 121 chain 104077 chr12 133851895 + 5997160 5998561 LTR12C 1709 - 0 1709 35717 84 7 6 391 51 20 90 12 9 95 0 278 263 5 9 83 0 43 46 1 6 9 4 0 212 0 17 48 chain 163463 chr12 133851895 + 6002658 6004610 L1PA7 6471 - 1 1954 22882 394 5 6 168 1 2 279 1 0 189 3 2 696 1 0 12 6 8 197 chain 28185 chr12 133851895 + 6004662 6005087 L1PB2 3958 + 3425 3838 92356 13 2 0 13 4 0 94 5 4 36 0 1 24 0 1 6 1 0 64 1 0 41 5 1 23 10 8 21 1 0 10 1 3 50 chain 29871 chr12 133851895 + 6051970 6052417 L1PB2 3958 + 3407 3838 85203 31 2 0 13 4 0 58 2 0 45 3 0 63 1 0 17 1 0 40 0 1 6 1 0 36 0 1 4 1 0 31 3 1 21 1 0 63 chain 39622 chr12 133851895 + 6064393 6064830 L1PA3long 6157 - 8 445 69859 437 chain 37428 chr12 133851895 + 6070025 6070519 MER1A 529 + 31 521 72927 11 5 0 132 1 0 182 0 1 100 13 14 50 chain 14932 chr12 133851895 + 6104149 6104331 MER30B 195 + 0 190 141532 61 0 1 26 0 7 95 chain 3804 chr12 133851895 + 6112213 6112261 L1M4c 1769 + 367 415 210320 48 chain 76854 chr12 133851895 + 6137549 6138443 L1P2 5180 + 1615 2513 45055 85 0 1 128 1 0 490 4 0 63 0 8 123 chain 15248 chr12 133851895 + 6194825 6195062 L1PA8 5853 + 5637 5853 140637 42 35 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6271615 6271750 MER85 139 + 4 139 162885 92 8 9 5 1 0 29 chain 2970 chr12 133851895 + 6276648 6276682 MER58C 217 + 66 100 225683 34 chain 111956 chr12 133851895 + 6299194 6300601 LTR12C 1709 - 0 1709 33677 64 5 0 105 2 1 51 38 37 81 0 29 113 0 4 106 3 1 5 1 0 98 0 278 244 0 1 491 chain 3193 chr12 133851895 + 6300651 6300685 LTR5 62 - 24 58 221053 34 chain 24049 chr12 133851895 + 6303972 6304257 AluSx4 309 + 7 293 110049 272 0 1 13 chain 35689 chr12 133851895 + 6305338 6306611 MER4A 717 - 0 717 75287 12 1 0 51 112 178 93 1 0 15 0 1 30 2 13 182 643 10 9 4 0 28 0 5 90 chain 44058 chr12 133851895 + 6354597 6355111 MER9a2 513 - 0 513 64150 321 11 10 182 chain 26234 chr12 133851895 + 6406098 6406398 AluY 311 + 0 305 99080 87 0 4 41 0 1 172 chain 4667 chr12 133851895 + 6406535 6406591 MER41D 557 + 6 62 198897 56 chain 14664 chr12 133851895 + 6408051 6408315 L1PB1 5432 + 5169 5422 142374 51 2 1 15 1 0 43 2 1 16 3 0 15 8 0 9 4 12 14 2 0 24 6 5 18 1 0 11 1 0 18 chain 24677 chr12 133851895 + 6462766 6463054 AluYf5 307 - 18 307 106571 85 6 7 197 chain 4536 chr12 133851895 + 6467261 6467314 MIR 256 + 93 146 200389 53 chain 4055 chr12 133851895 + 6537061 6537118 L1MB7 1623 + 103 160 206550 10 1 0 38 0 1 8 chain 19860 chr12 133851895 + 6556813 6557034 L1PA5 6144 - 12 233 127620 221 chain 21557 chr12 133851895 + 6557664 6557913 AluSc8 310 + 15 267 121936 117 0 3 132 chain 29375 chr12 133851895 + 6575994 6576346 THE1A 353 + 0 353 87184 84 0 1 268 chain 85307 chr12 133851895 + 6576346 6577405 THE1A-int 1579 + 0 1159 41415 74 1 0 296 18 119 73 1 2 4 1 0 591 chain 101213 chr12 133851895 + 6583976 6585346 SVA_C 1631 - 4 1344 36460 583 0 87 47 1 0 12 0 42 18 119 0 36 76 0 125 0 37 353 chain 10182 chr12 133851895 + 6584641 6584756 SVA_C 1631 - 914 1066 122086 39 0 37 76 chain 6729 chr12 133851895 + 6584792 6584868 SVA_C 1631 - 1102 1178 122086 76 chain 18634 chr12 133851895 + 6592257 6592545 AluSz 310 + 20 302 131120 163 7 0 53 32 33 33 chain 4317 chr12 133851895 + 6606015 6606075 Tigger3b 1229 - 673 735 203009 27 2 4 31 chain 15462 chr12 133851895 + 6612956 6613148 AluSg7 307 + 93 285 140011 192 chain 24928 chr12 133851895 + 6615471 6615772 AluY 311 + 0 299 105172 19 1 0 104 2 0 9 0 1 166 chain 5682 chr12 133851895 + 6615776 6615843 Tigger2b_Pri 1066 - 834 901 188287 67 chain 35171 chr12 133851895 + 6616521 6617108 LTR10D 510 - 0 510 75952 91 2 0 109 16 23 40 10 13 5 2 0 29 84 0 53 0 1 146 chain 23789 chr12 133851895 + 6625390 6625672 AluSg4 309 + 3 285 111541 282 chain 21008 chr12 133851895 + 6685253 6685500 AluSc 308 + 11 258 123883 247 chain 4043 chr12 133851895 + 6698992 6699060 L1MC4a 1092 + 741 807 206758 13 2 1 20 1 0 32 chain 24094 chr12 133851895 + 6703009 6703289 AluSp 311 - 20 300 109771 280 chain 24993 chr12 133851895 + 6733771 6734077 AluSp 311 - 5 303 104836 13 8 0 285 chain 4847 chr12 133851895 + 6786275 6786347 MIRb 242 - 103 174 196810 43 8 7 21 chain 27132 chr12 133851895 + 6814238 6814534 AluYk4 311 - 13 311 95827 22 0 2 274 chain 109314 chr12 133851895 + 6817288 6818649 LTR12C 1709 + 0 1709 34365 190 4 0 89 1 28 258 0 2 6 7 6 174 0 2 43 6 322 104 0 4 117 0 2 362 chain 13616 chr12 133851895 + 6823800 6823974 LTR3B_ 500 + 302 481 145914 16 0 1 77 6 10 75 chain 117377 chr12 133851895 + 6825018 6826463 LTR12C 1709 + 0 1709 32003 104 5 4 201 0 1 4 1 0 206 0 1 314 0 161 115 1 0 5 3 1 107 0 4 205 0 102 174 chain 26663 chr12 133851895 + 6847980 6848301 AluY 311 + 0 304 97441 126 16 0 140 1 0 38 chain 57206 chr12 133851895 + 6851054 6851696 LTR13 1007 + 369 1007 54400 336 5 1 301 chain 3279 chr12 133851895 + 6869800 6869845 MER3 215 - 12 52 219372 6 5 0 34 chain 3616 chr12 133851895 + 6897370 6897416 Charlie1a 1436 + 280 328 213411 13 0 2 33 chain 4680 chr12 133851895 + 6906237 6906309 MER5A 189 - 69 144 198756 11 0 2 30 7 8 24 chain 3899 chr12 133851895 + 6951125 6951233 MER104 178 + 13 122 208870 43 50 51 15 chain 21332 chr12 133851895 + 6987675 6987943 AluSp 311 + 43 310 122746 89 12 11 167 chain 12667 chr12 133851895 + 6988123 6988385 L1PB1 5432 + 5190 5430 149582 30 2 1 10 2 5 44 1 0 12 28 15 17 10 7 15 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 74710 chr12 133851895 + 6995023 6995985 LTR5_Hs 974 - 0 974 46154 77 0 6 20 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 22889 chr12 133851895 + 7004463 7004775 AluSq2 311 + 0 309 116149 133 0 1 5 17 18 47 7 2 103 chain 3588 chr12 133851895 + 7052979 7053041 U7 62 + 1 62 213851 30 13 12 19 chain 24921 chr12 133851895 + 7097405 7097689 AluYc3 301 - 12 301 105219 28 0 4 142 1 2 113 chain 29505 chr12 133851895 + 7110945 7111258 AluYb9 318 + 0 313 86621 313 chain 34610 chr12 133851895 + 7127904 7128356 LTR7B 505 - 8 505 76742 110 0 1 24 1 0 43 0 1 38 0 2 28 0 25 28 6 13 69 0 10 105 chain 83220 chr12 133851895 + 7133345 7134439 MER4-int 2692 - 1251 2363 42243 31 0 16 115 4 3 24 0 1 49 2 5 53 0 1 41 1 0 307 0 2 66 8 2 39 0 2 311 18 19 25 chain 125458 chr12 133851895 + 7144546 7146083 LTR12C 1709 + 0 1709 29256 265 1 2 35 8 12 385 0 159 253 1 0 6 2 0 107 0 4 129 10 17 335 chain 8188 chr12 133851895 + 7280037 7280225 MER2 342 - 131 336 170018 79 31 52 5 3 0 17 26 25 27 chain 4645 chr12 133851895 + 7319581 7319648 MLT1A0 366 - 296 356 199125 40 7 0 20 chain 44896 chr12 133851895 + 7323683 7324198 MER9a2 513 - 0 513 63179 68 2 0 445 chain 234094 chr12 133851895 + 7335550 7338465 HERV17-int 4347 + 13 2906 17083 13 2 1 48 1 0 37 2 0 27 1 0 68 34 29 383 14 14 28 0 1 89 0 3 593 2 0 15 0 1 105 1 2 60 23 35 156 4 0 20 1 3 403 11 12 75 34 7 665 chain 24773 chr12 133851895 + 7338801 7339129 LTR17 781 + 0 326 106044 59 19 18 79 1 0 170 chain 148905 chr12 133851895 + 7351805 7353486 SVA_D 2077 - 0 2026 24770 20 0 4 613 0 2 37 7 8 4 0 1 46 0 2 11 0 205 37 1 2 42 5 9 33 0 85 20 0 40 805 chain 157486 chr12 133851895 + 7365586 7367322 L1PA3long 6157 + 4409 6157 23664 326 3 0 144 0 4 427 0 4 373 0 4 181 0 3 282 chain 146654 chr12 133851895 + 7378197 7379873 L1PA5 6144 - 16 1696 25061 254 0 4 461 0 1 114 1 0 846 chain 39786 chr12 133851895 + 7401503 7402047 LTR66 600 + 0 600 69647 128 1 13 74 9 24 174 3 1 30 1 18 26 1 17 48 2 0 47 chain 532140 chr12 133851895 + 7403727 7409859 L1PA2 6032 + 3 6032 3946 151 1 0 43 0 1 58 1 0 67 0 1 391 0 1 51 139 11 128 0 17 1056 0 1 52 0 1 119 1 0 3030 0 5 108 0 1 736 chain 394582 chr12 133851895 + 7426403 7432035 L1PB1 5432 - 12 5354 10298 16 1 0 8 6 5 17 26 47 16 27 15 16 6 5 39 1 0 15 2 1 51 2 0 10 2 0 3 2 0 10 1 0 4 5 4 24 1 0 6 24 18 249 0 7 146 1 0 66 0 1 383 8 11 76 2 1 185 1 3 164 0 2 74 9 7 146 0 2 55 9 12 351 0 1 5 6 13 295 0 1 4 6 10 31 1 0 286 0 5 10 24 16 91 0 4 440 314 0 225 0 1 92 1 0 222 9 0 9 1 0 524 0 1 272 0 4 82 0 1 28 0 1 69 1 0 47 0 1 57 10 14 17 1 0 53 15 18 54 5 6 6 0 2 53 chain 28989 chr12 133851895 + 7432462 7432768 AluYa5 310 - 5 310 89045 212 1 0 93 chain 415194 chr12 133851895 + 7435866 7441145 L1PA7 6471 + 15 6467 9661 315 3 0 5 8 11 47 14 15 493 1 2 653 10 11 380 1 2 86 1 0 601 13 0 59 0 1 636 2 1 170 1 0 44 0 1 180 0 2 99 1 0 209 32 18 194 0 11 14 2 4 23 9 12 74 4 5 32 4 8 12 0 1171 205 0 1 106 0 1 66 0 2 470 chain 20632 chr12 133851895 + 7443225 7443910 THE1B 368 - 2 368 125185 73 2 1 117 322 3 28 79 80 64 chain 33614 chr12 133851895 + 7471503 7472281 MER1A 529 - 10 488 78223 44 34 32 344 310 12 46 chain 24316 chr12 133851895 + 7471930 7472209 AluSg7 307 + 25 304 108572 279 chain 517540 chr12 133851895 + 7483433 7489262 L1PA4 6152 + 38 6149 5420 569 0 2 1642 36 330 601 0 1 1741 1 0 111 15 0 265 0 1 848 chain 132734 chr12 133851895 + 7489273 7490909 L1PA7 6471 + 4804 6459 27474 76 10 23 52 1 0 274 0 1 35 3 4 341 12 11 90 0 3 317 0 2 331 4 5 90 chain 44854 chr12 133851895 + 7494697 7495208 MER9a3 513 + 0 513 63228 212 0 1 233 0 1 66 chain 13929 chr12 133851895 + 7526550 7526737 MER107 203 + 0 197 144826 88 0 1 59 5 0 13 0 14 22 chain 47685 chr12 133851895 + 7532480 7533371 L1PB1 5432 + 4709 5427 60707 110 5 6 50 0 1 24 0 2 197 137 0 15 7 0 23 1 0 10 1 0 11 8 4 6 2 0 51 1 0 18 1 0 5 2 1 37 1 0 16 2 0 6 23 13 12 2 0 5 1 0 14 2 0 24 1 0 21 1 0 31 2 0 5 chain 382868 chr12 133851895 + 7543642 7548197 L1PA6 6164 + 823 6162 10669 414 1 0 171 1 798 50 5 7 49 13 14 864 0 1 80 0 4 168 1 0 164 16 13 5 0 3 573 0 1 170 0 2 305 29 5 117 0 2 41 3 5 5 2 0 1308 chain 198939 chr12 133851895 + 7568029 7570475 L1PA7 6471 - 6 2474 19283 325 4 5 361 10 11 135 25 32 98 1 0 257 0 1 419 0 2 292 0 4 35 0 1 470 3 9 11 chain 7569 chr12 133851895 + 7574369 7574471 L1PB1 5432 + 5179 5279 173736 40 3 2 15 1 0 43 chain 284435 chr12 133851895 + 7575391 7579052 L1PA8 5853 + 2157 5853 14392 21 0 1 264 0 1 78 6 5 264 1 2 76 8 8 459 1 0 47 4 5 93 0 2 171 9 0 338 0 2 447 0 4 6 9 7 427 5 8 113 0 1 40 24 27 73 0 1 70 0 31 29 0 2 76 0 1 207 1 0 44 2 0 70 17 15 47 2 1 19 2 1 11 0 1 80 chain 3374 chr12 133851895 + 7579953 7580006 L1M3 994 + 266 318 217593 28 5 4 20 chain 17003 chr12 133851895 + 7584145 7584359 L1PA6 6164 + 5946 6161 135588 103 5 6 106 chain 27458 chr12 133851895 + 7589952 7590272 L1PA5 6144 - 19 339 94787 320 chain 138248 chr12 133851895 + 7615134 7617471 L1PA13 3608 - 116 2069 26444 23 2 1 11 24 20 41 7 4 30 1 0 27 1 0 27 0 1 19 374 5 9 2 0 115 1 0 27 1 0 20 3 2 68 0 4 205 0 1 570 9 1 13 10 0 102 2 1 180 0 4 94 1 3 23 0 1 4 8 7 49 1 3 92 0 1 56 0 4 85 chain 59921 chr12 133851895 + 7617897 7618632 L1PA8A 6298 + 5538 6291 52861 32 0 3 122 4 19 577 chain 47838 chr12 133851895 + 7621319 7621933 L1PA8 5853 + 5247 5853 60599 317 1 0 46 2 0 68 2 1 13 8 7 33 11 9 19 1 0 93 chain 5917 chr12 133851895 + 7623031 7623132 L1MA3 4352 + 4224 4317 186021 11 4 0 25 2 0 22 1 0 6 2 1 28 chain 463373 chr12 133851895 + 7624580 7630354 L1PA8 5853 + 111 5853 8279 124 1 0 67 12 0 374 1 2 261 0 1 492 0 1 438 1 0 81 5 6 69 4 0 52 2 1 401 0 4 402 0 1 333 18 6 163 1 0 129 0 1 367 22 24 532 0 1 387 1 0 172 4 0 6 0 3 382 0 2 166 1 0 46 2 0 78 4 3 10 0 1 28 7 1 11 2 1 18 2 1 88 2 0 5 chain 49286 chr12 133851895 + 7648243 7648838 L1PA8 5853 + 5016 5608 59522 544 1 0 29 3 1 18 chain 6320 chr12 133851895 + 7648840 7648910 L1PA8 5853 + 5608 5678 182638 70 chain 12156 chr12 133851895 + 7648924 7649088 L1PA8 5853 + 5690 5853 151585 70 2 1 92 chain 479086 chr12 133851895 + 7657566 7663035 L1PA4 6152 - 5 6151 7762 826 0 1 1350 0 4 335 3 0 864 0 689 163 0 4 1073 17 0 262 1 0 575 chain 35992 chr12 133851895 + 7668436 7668838 L1P1 4361 - 551 953 74907 402 chain 33737 chr12 133851895 + 7668838 7669228 L1PA3long 6157 + 5767 6157 78033 233 2 0 6 4 6 145 chain 20491 chr12 133851895 + 7674160 7674386 L1PA5 6144 - 15 241 125654 226 chain 26546 chr12 133851895 + 7680814 7681165 THE1A 353 + 2 353 97857 102 11 10 61 0 1 177 chain 389543 chr12 133851895 + 7681556 7686266 L1P2 5180 + 408 5178 10465 101 2 1 5 1 0 14 0 1 257 1 0 6 1 0 140 0 25 54 1 2 13 0 1 158 3 10 155 15 16 241 0 1 65 0 1 443 0 24 177 1 0 907 0 2 229 0 1 232 3 0 165 0 12 45 6 0 331 1 0 847 1 0 35 1 2 8 1 0 39 1 0 4 chain 22824 chr12 133851895 + 7686514 7686781 L1PA5 6144 + 5876 6144 116475 67 0 1 200 chain 94758 chr12 133851895 + 7686785 7688064 THE1A-int 1579 + 371 1577 38148 59 1 0 4 1 2 66 1 4 6 3 0 111 0 1 736 78 3 31 0 1 182 chain 27145 chr12 133851895 + 7688066 7688420 THE1A 353 + 0 353 95777 110 1 0 92 1 0 70 0 1 80 chain 21127 chr12 133851895 + 7690832 7691149 L1M1 2793 - 1574 1888 123461 40 13 12 12 7 1 5 0 3 5 0 2 136 1 0 98 chain 496018 chr12 133851895 + 7696230 7702678 L1PA6 6164 + 0 6160 7068 204 0 1 244 8 0 117 0 3 218 0 17 42 0 1 215 12 12 487 12 7 112 0 1 638 0 6 9 11 4 754 309 0 24 1 0 4 0 1 119 6 10 29 0 2 149 0 1 263 1 0 674 0 2 27 2 0 237 12 9 452 1 0 4 0 1 63 0 5 74 0 1 651 0 1 256 0 2 7 chain 401263 chr12 133851895 + 7703431 7707930 L1PA4 6152 + 1642 6146 10048 1185 2 1 806 3 0 334 0 4 71 0 1 1260 0 4 838 chain 378901 chr12 133851895 + 7713255 7718006 L1PA5 6144 + 1704 6144 10793 65 13 14 58 0 1 530 2 1 451 320 0 246 0 1 123 0 1 7 3 1 16 6 10 178 1 0 16 1 0 920 0 8 1630 1 6 8 5 0 137 3 1 11 chain 27908 chr12 133851895 + 7718121 7718471 L1PA8A 6298 + 5937 6289 93331 18 0 1 268 0 1 64 chain 15551 chr12 133851895 + 7731567 7731926 THE1B 368 - 0 368 139728 48 14 14 57 96 102 30 7 9 33 13 14 61 chain 35939 chr12 133851895 + 7732439 7732899 MER11A 1151 + 0 478 74971 77 0 8 136 8 7 66 0 11 173 chain 165300 chr12 133851895 + 7741786 7743800 SVA_D 2077 - 13 2077 22613 303 1 0 339 0 49 29 1 2 86 49 0 153 1 0 50 51 24 26 0 1 9 1 3 29 0 1 10 12 54 262 0 40 436 0 1 139 16 7 11 chain 4010 chr12 133851895 + 7742545 7742594 SVA_D 2077 - 645 694 84005 49 chain 4173 chr12 133851895 + 7742798 7742849 SVA_D 2077 - 897 948 84005 51 chain 496648 chr12 133851895 + 7746525 7752937 L1PA7 6471 + 1 6466 7027 133 30 38 55 29 39 139 15 13 35 0 1 19 2 1 42 1 2 59 3 0 16 7 8 651 13 32 740 0 1 329 0 1 278 4 5 181 2 0 51 2 3 16 0 4 223 7 6 189 6 7 166 3 2 59 1 5 21 0 3 80 0 3 34 0 12 131 0 2 431 0 1 681 1 0 121 5 0 551 1 0 82 0 2 5 2 0 600 1 0 114 5 6 28 4 0 8 chain 3194 chr12 133851895 + 7764768 7764808 MADE1 96 - 2 41 221035 35 1 0 4 chain 5116 chr12 133851895 + 7768657 7768732 MLT2A1 477 + 375 477 193910 7 0 2 11 3 28 54 chain 32000 chr12 133851895 + 7776036 7776480 LTR12F 595 + 0 584 80865 31 0 1 71 0 1 31 0 4 38 24 96 14 0 64 39 1 0 36 1 0 158 chain 41437 chr12 133851895 + 7777536 7778084 PABL_A 660 - 5 660 67368 385 11 95 85 0 9 13 4 18 50 chain 57117 chr12 133851895 + 7788135 7789182 MER4E 760 - 4 756 54457 161 0 4 146 305 0 79 1 3 187 23 26 126 0 1 19 chain 102983 chr12 133851895 + 7792253 7793614 LTR12C 1709 + 0 1709 35992 260 0 1 175 0 1 129 17 34 70 0 280 102 0 1 59 1 0 4 4 2 106 0 4 21 5 0 98 47 97 124 0 3 5 5 4 129 chain 5497 chr12 133851895 + 7801087 7801152 LTR56 451 + 208 273 190066 65 chain 3029 chr12 133851895 + 7801170 7801221 MER52C 1267 - 275 326 224415 14 1 0 13 2 3 21 chain 29246 chr12 133851895 + 7824248 7824556 AluYf4 310 - 1 309 87819 308 chain 26425 chr12 133851895 + 7843473 7843764 AluY 311 + 8 301 98322 123 0 2 168 chain 44809 chr12 133851895 + 7856232 7856732 LTR2C 499 - 0 499 63282 60 1 0 439 chain 25099 chr12 133851895 + 7881598 7881908 AluY 311 + 0 305 104294 98 6 1 24 1 0 9 0 1 172 chain 47870 chr12 133851895 + 7883537 7884105 LTR19B 566 + 0 566 60578 506 12 10 50 chain 24764 chr12 133851895 + 7884938 7885247 AluSc5 308 - 6 308 106092 16 5 0 155 2 0 131 chain 18299 chr12 133851895 + 7891414 7891635 L1PA5 6144 - 0 227 132077 55 0 4 94 0 2 72 chain 3138 chr12 133851895 + 7898328 7898361 MLT1A 405 + 361 394 222212 33 chain 78602 chr12 133851895 + 7903970 7905221 LTR12E 1234 - 2 1234 44222 65 0 4 6 47 71 44 3 7 29 5 34 20 19 18 74 9 20 71 50 0 47 39 0 114 1 0 37 0 1 5 2 1 81 0 1 17 15 10 262 0 13 156 9 0 24 chain 2998 chr12 133851895 + 7904460 7904498 LTR12E 1234 - 515 553 208204 38 chain 3598 chr12 133851895 + 7912129 7912168 tRNA-Thr-ACA 39 + 0 39 213696 39 chain 23512 chr12 133851895 + 7916788 7917078 AluSq10 312 + 0 288 113063 8 1 0 260 3 2 18 chain 26996 chr12 133851895 + 7917886 7918188 AluY 311 + 2 305 96294 130 0 1 172 chain 14532 chr12 133851895 + 7939306 7939473 MER41A 554 - 374 541 142796 167 chain 7319 chr12 133851895 + 7952959 7953054 HY1 111 - 6 102 175305 27 0 1 68 chain 29702 chr12 133851895 + 7968681 7968999 AluYb8 318 - 0 318 85826 318 chain 5788 chr12 133851895 + 7969601 7969677 Tigger7 736 - 613 699 187295 60 1 11 15 chain 23317 chr12 133851895 + 7976042 7976334 AluSp 311 + 6 300 114113 65 1 2 20 0 1 206 chain 5757 chr12 133851895 + 7980589 7980654 MER41A 554 + 401 466 187579 65 chain 3890 chr12 133851895 + 7993739 7993839 L1MC2 1988 - 8 111 209018 34 1 0 4 36 39 6 0 1 19 chain 86123 chr12 133851895 + 8014948 8016028 LTR12C 1709 + 350 1709 41110 111 1 0 28 1 2 159 0 278 180 12 9 107 0 4 481 chain 24722 chr12 133851895 + 8018847 8020157 Tigger1 2417 + 645 1833 106317 51 6 16 44 957 825 252 chain 23828 chr12 133851895 + 8031302 8031601 AluSc5 308 + 10 308 111317 247 1 0 51 chain 11027 chr12 133851895 + 8031645 8031818 LTR61 567 - 377 546 156109 75 8 10 36 20 14 34 chain 105349 chr12 133851895 + 8033693 8035070 LTR12C 1709 + 0 1709 35414 168 0 1 34 1 2 74 4 0 185 7 4 15 0 9 34 0 1 133 0 278 138 1 48 100 0 4 94 0 1 178 2 0 123 2 1 84 chain 31046 chr12 133851895 + 8042425 8042801 MER41A 554 - 165 541 82443 376 chain 24103 chr12 133851895 + 8071336 8071629 AluSp 311 - 20 311 109732 114 1 0 45 1 0 132 chain 24273 chr12 133851895 + 8094599 8094894 AluY 311 + 2 288 108822 48 4 0 147 5 0 91 chain 26644 chr12 133851895 + 8106228 8106537 AluY 311 + 1 305 97497 18 4 0 114 1 0 172 chain 3541 chr12 133851895 + 8118416 8118456 THE1D 372 - 2 42 214690 40 chain 5183 chr12 133851895 + 8127833 8127899 MER5A1 166 + 3 69 193211 66 chain 3623 chr12 133851895 + 8145280 8145343 MER53 195 + 0 61 213292 20 11 9 32 chain 29131 chr12 133851895 + 8157285 8157790 MLT2A1 477 + 0 477 88407 48 0 2 88 0 1 22 24 26 194 89 57 19 1 0 20 chain 4054 chr12 133851895 + 8159244 8159294 Tigger1 2417 + 712 762 206586 50 chain 21958 chr12 133851895 + 8160736 8161098 L1MA3 4352 - 297 929 120394 181 66 8 86 0 327 12 0 1 17 chain 33489 chr12 133851895 + 8161871 8162324 Tigger1 2417 + 1576 2027 78426 128 10 7 122 6 7 187 chain 10838 chr12 133851895 + 8165285 8165413 BC200 147 - 19 147 156833 128 chain 23565 chr12 133851895 + 8169002 8169285 AluSp 311 - 10 290 112768 181 3 0 99 chain 4102 chr12 133851895 + 8181985 8182033 MIR 256 - 101 149 205908 48 chain 23789 chr12 133851895 + 8199776 8200058 AluSp 311 + 10 295 111533 81 0 3 201 chain 38892 chr12 133851895 + 8225590 8226057 LTR2 463 + 0 463 70877 235 4 5 172 5 0 51 chain 4440 chr12 133851895 + 8227464 8227518 MER82 654 + 141 195 201451 54 chain 14076 chr12 133851895 + 8237057 8237258 L1PA8A 6298 - 7 224 144303 71 29 45 101 chain 30012 chr12 133851895 + 8247831 8248143 AluYb8 318 - 6 318 84770 312 chain 4272 chr12 133851895 + 8253374 8253421 MER41B 635 - 87 134 203599 47 chain 24301 chr12 133851895 + 8257507 8257935 L1PA15 4387 - 60 474 108653 12 3 1 44 6 3 49 4 3 10 11 0 20 1 0 55 0 4 22 19 18 50 26 28 75 1 0 20 chain 36027 chr12 133851895 + 8265562 8265968 L1PA4 6152 - 0 405 74865 6 2 0 107 0 1 291 chain 6734 chr12 133851895 + 8297008 8297092 L1M2a 2583 + 1891 1975 179440 84 chain 4631 chr12 133851895 + 8298108 8298178 L1PA16 3655 + 3433 3505 199294 38 3 5 29 chain 155445 chr12 133851895 + 8299378 8301542 L1PA10 4194 + 237 2379 23928 4 1 0 9 1 0 18 5 3 15 1 0 7 39 14 6 1 0 17 8 6 17 1 0 10 2 1 8 0 3 7 8 0 13 4 0 8 1 0 6 0 1 7 1 0 67 2 0 33 0 10 149 0 3 1233 0 1 106 6 9 191 3 7 20 2 6 127 chain 369317 chr12 133851895 + 8301547 8306207 L1PA6 6164 - 192 4865 11112 146 1 0 773 0 1 117 0 1 285 1 0 287 0 2 160 0 1 396 0 1 495 1 0 6 0 1 18 0 2 36 0 4 846 6 7 62 1 0 330 66 68 115 0 1 240 2 3 98 15 6 13 13 22 43 2 1 86 chain 199216 chr12 133851895 + 8311467 8314239 L1PB1 5432 - 41 2813 19267 21 1 0 21 67 53 16 1 0 18 11 12 13 19 17 50 20 14 10 1 0 7 2 1 24 7 0 7 3 4 217 4 12 166 3 1 89 20 1 77 9 13 570 0 1 30 0 1 189 2 0 215 1 2 406 0 23 243 0 5 22 1 0 36 0 1 123 1 12 29 chain 44733 chr12 133851895 + 8328868 8329465 PRIMA4_LTR 623 - 0 623 63351 186 1 2 49 1 2 118 4 5 63 6 29 169 chain 164653 chr12 133851895 + 8335971 8337963 SVA_D 2077 + 0 2077 22714 53 0 2 49 0 27 579 0 40 11 0 40 107 2 0 8 2 38 76 1 0 6 35 10 6 1 0 34 1 0 288 76 47 638 1 0 18 chain 2910 chr12 133851895 + 8336865 8336900 SVA_D 2077 + 1137 1172 63696 35 chain 5819 chr12 133851895 + 8337230 8337300 SVA_D 2077 + 1472 1542 63696 70 chain 29308 chr12 133851895 + 8362306 8362612 AluYa5 310 - 4 310 87525 306 chain 91319 chr12 133851895 + 8372774 8373803 LTR5A 1029 + 0 1029 39189 59 0 2 89 1 0 621 3 1 77 0 1 179 chain 4826 chr12 133851895 + 8399672 8399789 MLT1C 463 + 63 167 197056 47 49 36 21 chain 87111 chr12 133851895 + 8404040 8405344 LTR12C 1709 - 1 1709 40733 83 1 0 84 1 0 10 0 102 201 11 4 11 24 0 57 0 47 74 0 2 48 0 278 217 46 6 16 3 0 4 0 1 39 7 6 5 0 1 28 3 46 36 9 0 10 6 15 234 7 14 29 chain 91507 chr12 133851895 + 8417280 8418309 LTR5A 1029 - 1 1029 39128 881 1 0 147 chain 73067 chr12 133851895 + 8432686 8433736 MER11C 1089 - 26 1089 46996 25 0 1 117 1 0 56 0 1 115 4 5 5 0 1 38 1 0 4 1 5 86 70 69 149 1 0 63 2 6 54 7 16 118 4 0 129 chain 13049 chr12 133851895 + 8434341 8434890 HERVH-int 3825 - 1 550 14349 549 chain 41315 chr12 133851895 + 8434894 8435391 LTR2C 499 - 0 499 67514 64 1 0 182 1 0 72 2 5 65 0 1 110 chain 339323 chr12 133851895 + 8438043 8442125 HERVE-int 4064 - 4 4064 11915 581 1 5 68 2 0 709 3 1 307 1 2 12 0 1 840 26 1 426 0 1 267 1 0 22 5 6 811 chain 74203 chr12 133851895 + 8443213 8446335 HERVH-int 3825 - 550 3825 14349 824 1 49 135 0 1 169 0 5 37 14 10 948 0 2 316 2 1 22 0 1 25 8 28 20 21 0 6 42 0 20 2 39 13 26 134 137 1 0 333 chain 2955 chr12 133851895 + 8447547 8447582 MER5A1 166 + 101 136 226001 35 chain 522685 chr12 133851895 + 8453669 8459778 L1PA4 6152 - 0 6152 4896 10 1 0 131 7 0 7 1 8 586 6 9 17 1 0 75 0 5 532 0 1 427 0 1 404 0 1 159 0 1 262 0 1 191 4 3 624 0 3 374 1 0 139 0 2 1285 0 27 142 0 1 133 9 10 581 chain 30444 chr12 133851895 + 8468123 8468533 MER4A1 472 + 35 449 83542 65 0 2 124 24 26 197 chain 46464 chr12 133851895 + 8470083 8470637 LTR6B 557 - 0 557 61629 162 4 2 25 0 5 363 chain 124676 chr12 133851895 + 8473790 8476392 HERVS71-int 4705 - 2403 4650 29482 316 11 10 58 7 5 107 0 1 4 1 0 198 2 1 637 9 3 61 6 8 85 4 0 21 127 67 18 1 0 4 1 0 17 1 0 5 7 4 12 4 0 5 1 0 8 96 64 15 506 304 19 2 0 3 2 0 21 2 0 7 11 6 10 1 0 8 2 0 11 1 0 9 27 21 24 2 0 7 1 0 12 29 20 15 3 0 5 2 0 11 chain 44968 chr12 133851895 + 8476966 8477521 LTR6B 557 - 0 557 63091 49 0 2 506 chain 5953 chr12 133851895 + 8478228 8478332 MER58A 224 - 109 211 185659 20 2 3 45 3 4 8 4 0 22 chain 70793 chr12 133851895 + 8480860 8481939 MER11A 1151 + 0 1144 48016 55 0 99 76 1 0 64 4 0 135 14 15 94 0 1 145 5 6 107 50 0 29 1 35 22 18 0 37 0 1 20 7 6 34 13 15 148 chain 9086 chr12 133851895 + 8485668 8485777 LTR2 463 - 113 222 165138 109 chain 25173 chr12 133851895 + 8497900 8498238 THE1B 368 - 0 348 103895 37 7 3 156 1 0 113 0 15 24 chain 24390 chr12 133851895 + 8520804 8521095 AluY 311 + 9 301 108134 123 0 1 168 chain 19474 chr12 133851895 + 8532632 8532892 L1PA8 5853 + 5586 5842 128733 20 7 5 74 1 0 55 2 1 9 0 1 9 1 0 82 chain 11956 chr12 133851895 + 8535852 8536012 L1MA8 2339 + 1931 2088 152376 23 2 0 55 1 0 79 chain 94469 chr12 133851895 + 8556690 8558080 LTR12C 1709 + 2 1709 38217 258 1 2 38 0 1 37 0 43 70 15 18 181 0 278 182 1 0 6 4 2 100 1 0 6 11 4 180 0 106 27 1 0 17 102 0 60 31 30 61 chain 2005 chr12 133851895 + 8557841 8557881 LTR12C 1709 + 1602 1643 194990 4 0 1 36 chain 83540 chr12 133851895 + 8561820 8562842 LTR5A 1029 - 7 1028 42100 870 7 6 145 chain 344777 chr12 133851895 + 8571652 8575710 HERVE-int 4064 - 0 4064 11763 317 0 1 69 0 4 197 1 0 70 0 10 564 6 1 438 1 0 4 0 1 41 0 1 135 3 0 676 1 2 27 0 1 694 4 1 810 chain 85928 chr12 133851895 + 8584002 8585035 LTR5A 1029 - 0 1029 41182 669 3 0 208 6 5 147 chain 15642 chr12 133851895 + 8594517 8594699 HERVE-int 4064 - 0 182 139459 182 chain 9130 chr12 133851895 + 8594704 8594812 HERVE-int 4064 - 2421 2529 164911 108 chain 61722 chr12 133851895 + 8594813 8595530 HERVE-int 4064 - 2531 3251 52031 27 1 2 521 0 2 168 chain 69067 chr12 133851895 + 8595530 8596339 HERVE-int 4064 - 3252 4064 48777 43 0 1 86 0 1 73 0 1 607 chain 3913 chr12 133851895 + 8605889 8606053 MER21C 908 - 506 674 208653 16 46 45 14 21 27 15 18 17 34 chain 15408 chr12 133851895 + 8607016 8607417 L1PB1 5432 + 5046 5413 140173 6 1 0 51 63 55 9 2 0 53 2 1 31 16 15 13 1 0 16 1 0 4 2 0 13 40 28 5 2 0 24 1 0 21 1 0 13 1 0 9 chain 81000 chr12 133851895 + 8614527 8615495 LTR5_Hs 974 + 0 974 43195 285 0 1 533 8 15 31 8 6 103 chain 28664 chr12 133851895 + 8625587 8625889 AluYg6 310 - 8 310 90474 302 chain 23847 chr12 133851895 + 8627481 8627771 L1PA6 6164 - 2 290 111198 8 3 0 148 4 5 127 chain 3590 chr12 133851895 + 8630790 8631006 MERX 374 - 10 232 213817 23 139 139 23 5 9 9 0 2 17 chain 205527 chr12 133851895 + 8632742 8635251 L1P2 5180 - 2184 4689 18824 282 0 5 9 13 8 365 9 0 191 1 0 340 1 3 453 17 18 46 0 4 69 0 1 46 0 1 362 1 0 6 1 0 272 1 0 24 chain 4628 chr12 133851895 + 8637348 8637401 U6 107 + 7 60 199318 53 chain 63083 chr12 133851895 + 8639007 8639756 L1PA5 6144 + 5384 6142 51410 302 0 9 447 chain 87832 chr12 133851895 + 8646601 8648210 L1PA8 5853 - 0 1177 40435 93 66 67 14 12 11 60 2 0 44 1 0 554 2 0 48 426 0 282 1 0 4 chain 26493 chr12 133851895 + 8647503 8647914 LTR7B 505 + 0 495 98073 105 0 10 56 19 88 36 36 1 15 0 41 89 14 13 41 chain 64517 chr12 133851895 + 8648213 8649080 L1P3 4156 + 8 874 50791 51 0 3 171 34 33 16 2 0 37 4 3 12 3 1 73 1 0 184 0 4 79 5 4 195 chain 28213 chr12 133851895 + 8663572 8663904 L1PA5 6144 - 4 350 92261 107 7 21 218 chain 288774 chr12 133851895 + 8675738 8679767 L1PA10 4194 - 44 4019 14099 34 3 0 639 2 0 40 7 8 198 5 6 94 1 2 166 4 0 43 10 11 201 0 3 83 0 1 20 1 0 728 0 3 49 7 17 31 16 15 151 0 1 412 0 1 405 6 9 295 2 0 81 43 24 16 2 1 6 1 0 21 2 0 22 45 19 7 1 0 14 3 1 23 1 0 4 36 29 9 2 0 8 3 0 10 2 0 14 chain 86456 chr12 133851895 + 8690281 8691292 LTR13 1007 + 0 1007 40986 360 9 5 584 2 0 5 8 10 43 chain 58906 chr12 133851895 + 8695666 8696322 L1PA4 6152 - 9 666 53452 596 0 1 60 chain 265038 chr12 133851895 + 8711555 8715066 HERVK22-int 3844 - 383 3843 15439 18 18 14 18 66 48 7 1 0 10 58 40 16 2 0 43 15 10 39 2 0 20 1 0 52 10 8 74 13 12 76 1 0 911 11 15 195 1 0 269 1 0 505 1 5 161 1 2 849 7 4 39 chain 14724 chr12 133851895 + 8718047 8718230 HERVK22-int 3844 + 3662 3844 142187 87 2 1 94 chain 87162 chr12 133851895 + 8736949 8737954 LTR13 1007 + 0 1007 40707 426 7 0 14 0 1 117 11 19 430 chain 8912 chr12 133851895 + 8751614 8752225 L1MB7 1623 - 18 549 166072 8 1 0 35 5 0 6 453 376 83 4 7 16 chain 11011 chr12 133851895 + 8753229 8753777 MER21A 919 - 494 727 156172 10 11 0 17 0 2 27 355 44 24 0 4 64 11 12 29 chain 7880 chr12 133851895 + 8774049 8774350 L1M3 994 - 675 965 171809 25 1 0 36 13 12 21 1 0 4 17 18 22 97 88 13 3 1 18 1 0 8 1 5 12 1 0 7 chain 64517 chr12 133851895 + 8776916 8777817 SVA_D 2077 + 0 820 50793 36 1 12 11 13 0 149 3 1 282 2 1 83 116 0 29 0 40 176 chain 3305 chr12 133851895 + 8777525 8777612 SVA_D 2077 + 644 731 161958 87 chain 32626 chr12 133851895 + 8777893 8778333 SVA_F 1814 + 664 1291 79805 65 0 233 119 0 1 45 0 1 48 0 1 36 49 0 44 0 1 16 1 0 17 chain 2174 chr12 133851895 + 8778233 8778255 SVA_F 1814 + 966 988 235751 22 chain 90615 chr12 133851895 + 8778400 8779381 SVA_E 1901 + 848 1901 39423 79 4 0 32 1 0 66 0 77 799 chain 108226 chr12 133851895 + 8783295 8784614 L1PA8 5853 + 4533 5853 34637 124 1 0 231 0 2 116 1 0 3 2 0 75 0 2 83 8 11 340 0 1 43 1 0 15 0 4 27 2 0 69 1 0 14 1 0 47 2 1 19 1 0 93 chain 77952 chr12 133851895 + 8788256 8789205 LTR5_Hs 974 + 0 974 44546 8 0 4 273 0 1 123 7 0 48 1 5 194 0 1 119 7 7 47 0 22 122 chain 27093 chr12 133851895 + 8795777 8796072 AluYc3 301 - 5 301 95964 58 0 1 237 chain 123766 chr12 133851895 + 8822771 8824961 THE1A-int 1579 - 15 1579 29786 189 0 1 124 0 1 689 0 4 58 313 0 73 320 0 212 1 2 211 chain 25244 chr12 133851895 + 8824961 8825311 THE1A 353 - 0 353 103510 96 14 16 5 0 3 122 5 3 108 chain 17597 chr12 133851895 + 8833054 8833274 MER41A 554 + 334 554 134005 220 chain 12459 chr12 133851895 + 8864125 8864271 L1PA3long 6157 - 0 154 150425 12 0 8 134 chain 3066 chr12 133851895 + 8873748 8873784 Tigger1 2417 - 34 70 223661 36 chain 21048 chr12 133851895 + 8897446 8897711 L1PA6 6164 - 2 268 123737 155 10 11 100 chain 84985 chr12 133851895 + 8912549 8913523 L1PA5 6144 - 6 985 41514 147 1 2 103 0 1 464 1 0 120 0 4 138 chain 353093 chr12 133851895 + 8914805 8918978 HERV17-int 4347 - 117 4332 11523 183 0 1 200 0 1 63 0 1 36 0 3 243 7 11 65 0 4 278 2 0 482 4 2 136 0 4 241 0 1 88 0 5 648 0 2 60 1 2 184 1 3 233 0 1 11 0 2 364 0 20 157 2 0 33 0 3 147 8 6 35 1 0 132 1 0 27 2 0 85 2 1 11 chain 35912 chr12 133851895 + 8920558 8921064 LTR17 781 - 0 526 74997 19 12 56 14 30 7 352 7 6 72 chain 3466 chr12 133851895 + 8936000 8936121 Tigger3c 601 - 70 204 215889 24 0 34 17 61 40 19 chain 132963 chr12 133851895 + 8939679 8941264 LTR12C 1709 + 0 1709 27429 575 3 4 97 18 137 24 1 0 275 1 0 4 4 2 12 0 4 90 0 4 481 chain 409708 chr12 133851895 + 8941370 8946267 HERV9-int 5642 + 0 4824 9810 22 1 2 140 0 4 9 1 2 616 1 0 22 0 1 5 8 7 83 4 0 116 80 0 78 3 4 498 0 1 421 0 1 998 1 0 778 0 1 881 1 3 122 0 1 8 chain 132485 chr12 133851895 + 8947138 8948723 LTR12C 1709 + 0 1709 27529 30 0 2 434 2 0 109 3 4 97 18 137 24 1 0 275 1 0 4 4 2 12 0 4 90 0 4 481 chain 14007 chr12 133851895 + 8949195 8949397 MSTA-int 1630 - 1398 1601 144558 17 18 19 167 chain 135899 chr12 133851895 + 8952356 8953961 L1PA5 6144 + 4548 6141 26857 110 1 0 394 0 1 164 29 14 579 0 2 181 1 2 146 chain 31424 chr12 133851895 + 8953961 8954328 L1PA6 6164 + 5782 6149 81777 367 chain 20591 chr12 133851895 + 8957474 8957877 LTR7 482 + 0 482 125329 47 22 117 19 57 6 35 8 40 22 5 6 127 12 14 49 chain 289031 chr12 133851895 + 8957879 8961555 HERVH-int 3825 + 0 3825 14082 212 0 11 110 1 0 78 7 8 111 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 14 7 1 14 1 0 13 26 0 25 22 0 58 42 0 65 1 0 444 15 0 179 2 0 283 4 31 124 0 1 174 0 10 109 0 3 151 0 2 196 0 3 580 10 12 39 1 211 267 0 2 225 chain 1846 chr12 133851895 + 8958644 8958673 HERVH-int 3825 + 673 702 186633 29 chain 28224 chr12 133851895 + 8962765 8963172 LTR7 482 + 0 482 92211 66 13 51 106 4 5 30 0 32 97 0 2 30 12 14 49 chain 16650 chr12 133851895 + 8963559 8963784 AluSp 311 + 11 235 136527 127 17 16 81 chain 126305 chr12 133851895 + 8976975 8979044 L1MA3 4352 - 24 1940 29007 14 1 0 21 13 14 5 3 0 15 1 0 23 4 0 83 0 1 8 19 11 14 61 29 30 76 0 202 0 1 10 6 0 80 1 2 87 5 4 189 0 1 9 1 0 62 1 0 131 0 5 150 8 4 188 13 21 134 91 66 74 0 1 50 3 0 77 5 0 45 1 0 55 chain 20481 chr12 133851895 + 9029911 9030268 L1PA17 2846 + 2337 2682 125681 118 8 10 34 4 0 18 5 0 18 8 7 27 1 2 21 2 0 8 5 4 27 3 1 50 chain 20702 chr12 133851895 + 9039899 9040203 HERV1_LTRe 372 + 8 284 124963 6 1 0 17 11 0 24 2 0 33 1 0 75 13 0 121 chain 9802 chr12 133851895 + 9043901 9044082 L1PB1 5432 + 5261 5420 161582 20 2 1 14 14 1 30 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 25383 chr12 133851895 + 9052472 9052829 THE1A 353 - 0 353 102768 57 1 0 85 3 4 5 1 0 26 0 1 4 1 0 60 2 1 104 2 0 6 chain 112376 chr12 133851895 + 9052834 9054791 THE1A-int 1579 - 5 1363 33568 77 309 0 494 0 2 139 311 0 345 0 19 282 chain 23698 chr12 133851895 + 9054823 9055099 AluSp 311 - 23 300 112043 224 0 1 52 chain 22426 chr12 133851895 + 9055320 9055621 THE1A 353 - 0 301 118354 142 3 4 104 2 1 50 chain 24168 chr12 133851895 + 9061593 9061890 AluSp 311 + 8 303 109385 16 4 2 277 chain 22015 chr12 133851895 + 9079229 9079522 AluSq2 311 + 6 295 120162 81 11 7 33 1 0 4 1 2 162 chain 23929 chr12 133851895 + 9088364 9088659 AluSp 311 - 20 311 110761 159 1 0 46 10 7 79 chain 149867 chr12 133851895 + 9115945 9117601 L1PA4 6152 - 2317 3972 24605 264 1 0 1391 chain 211144 chr12 133851895 + 9117601 9119921 L1PA4 6152 + 3807 6131 18422 1497 0 4 823 chain 22641 chr12 133851895 + 9139305 9139709 MSTA 426 + 0 426 117365 94 13 14 21 1 0 5 34 40 31 3 4 27 9 14 20 1 3 23 0 5 12 2 5 108 chain 63284 chr12 133851895 + 9156301 9156990 L1PA3long 6157 - 0 689 51331 689 chain 22939 chr12 133851895 + 9157685 9157957 L1PA7 6471 + 6195 6468 115912 106 0 1 166 chain 22224 chr12 133851895 + 9166072 9166446 THE1B 368 - 0 368 119244 57 2 0 61 42 52 28 6 5 83 15 1 62 0 1 18 chain 63908 chr12 133851895 + 9171333 9172204 L1MA3 4352 + 3035 3918 51049 12 2 0 9 1 3 17 0 1 4 1 0 166 0 1 18 0 7 108 1 0 143 4 9 329 1 0 37 0 1 18 chain 8965 chr12 133851895 + 9174747 9174882 Tigger3b 1229 - 942 1080 165800 20 11 14 104 chain 23660 chr12 133851895 + 9181045 9181337 AluSc 308 - 17 308 112246 33 2 1 257 chain 22677 chr12 133851895 + 9184161 9184443 MER4E 760 - 8 292 117180 29 0 2 253 chain 36223 chr12 133851895 + 9187779 9188200 L1PA7 6471 + 6046 6470 74595 278 1 0 131 0 4 11 chain 13148 chr12 133851895 + 9188202 9188462 L1PA15 4387 + 4121 4366 147651 9 1 0 54 2 1 22 5 1 9 1 0 39 17 14 43 2 0 17 10 8 18 1 0 10 chain 2761 chr12 133851895 + 9204002 9204032 MER52C 1267 + 941 971 229318 30 chain 47218 chr12 133851895 + 9230690 9231246 L1PA8A 6298 - 9 566 61031 188 0 1 368 chain 21026 chr12 133851895 + 9235449 9235685 L1PA5 6144 - 432 669 123832 106 0 1 130 chain 27918 chr12 133851895 + 9235685 9235996 L1PA5 6144 + 5833 6144 93283 311 chain 30254 chr12 133851895 + 9248338 9248654 AluYb8 318 - 2 318 84053 316 chain 9517 chr12 133851895 + 9253345 9253648 L1PB1 5432 + 5197 5427 162991 23 2 1 14 46 1 45 1 0 9 9 6 12 8 0 15 15 12 11 2 0 23 28 22 13 1 0 14 1 0 4 2 0 5 chain 19088 chr12 133851895 + 9276557 9276795 MER75B 242 - 0 239 129852 58 1 2 179 chain 32327 chr12 133851895 + 9293347 9294474 LTR19-int 1103 - 69 1060 80308 18 23 6 10 8 7 19 19 7 45 1 0 17 2 0 5 124 290 15 14 0 61 6 7 24 11 10 12 34 29 88 23 20 20 5 0 13 5 0 49 28 7 34 34 0 11 30 0 7 1 0 49 20 0 5 1 0 18 1 0 7 17 0 27 107 0 13 1 0 10 15 12 14 1 0 5 chain 18050 chr12 133851895 + 9312033 9312472 MSTC 436 + 26 436 132734 120 20 44 29 117 65 28 46 45 79 chain 25266 chr12 133851895 + 9313247 9313527 AluY 311 + 19 299 103383 280 chain 338781 chr12 133851895 + 9323970 9328487 L1PA11 4918 + 42 4578 11928 33 61 55 38 6 12 28 3 0 6 11 24 848 1 2 36 1 9 120 4 1 104 0 9 48 0 1 282 0 1 4 2 1 109 1 2 380 2 1 5 0 1 4 1 0 34 1 0 7 2 0 45 6 5 31 0 1 299 0 1 392 0 6 213 4 15 553 6 7 102 1 0 411 6 7 57 3 2 13 2 0 68 2 0 13 5 4 16 45 31 15 1 0 13 2 0 11 chain 7832 chr12 133851895 + 9332738 9332821 L1PA2 6032 - 9 92 172111 83 chain 35837 chr12 133851895 + 9339195 9339606 L1PA7 6471 + 6058 6468 75081 255 0 1 145 2 0 9 chain 4779 chr12 133851895 + 9341550 9341613 L1PREC2 3366 + 2525 2592 197590 49 2 6 12 chain 17253 chr12 133851895 + 9370443 9370771 L1PB1 5432 + 5030 5332 134916 73 1 2 9 1 0 20 1 0 12 1 0 12 5 1 9 2 0 52 2 1 9 7 6 45 1 0 15 25 12 19 2 0 5 chain 58662 chr12 133851895 + 9376759 9377466 L1PA6 6164 - 2 712 53601 6 4 0 180 1 8 78 1 0 307 0 1 130 chain 147377 chr12 133851895 + 9377503 9379380 L1P2 5180 - 3234 5124 24983 1148 5 20 74 0 1 188 1 0 8 11 10 35 11 5 57 1 0 10 14 22 121 1 0 97 1 0 94 chain 231853 chr12 133851895 + 9402137 9405281 L1PA11 4918 + 1244 4500 17209 96 1 0 5 20 21 107 0 1 220 24 16 103 4 1 44 0 1 337 0 1 27 0 114 206 2 5 366 1 2 63 0 1 404 0 2 121 10 11 25 0 6 6 7 1 428 1 0 135 13 13 26 1 0 44 3 14 110 6 1 57 10 9 10 5 2 7 0 1 61 2 0 12 3 2 11 chain 57977 chr12 133851895 + 9476343 9478180 HERVS71-int 4705 - 637 2225 53989 20 24 19 13 19 16 16 13 5 15 1 0 22 1 0 9 7 5 25 1 0 6 2 0 18 1 0 22 4 1 33 1 0 4 1 0 5 1 0 24 3 0 5 1 0 26 1 0 4 2 0 6 1 0 5 14 13 16 11 7 5 1 0 4 1 0 11 1 0 10 2 0 12 1 0 33 6 5 13 2 0 55 5 2 33 1 0 28 1 0 7 33 20 57 7 5 14 1 0 14 34 29 27 1 0 5 1 0 9 76 74 4 1 0 20 3 0 18 12 9 14 5 4 38 0 4 6 169 129 21 1 0 9 65 0 9 18 9 13 1 0 9 1 0 8 2 0 21 128 108 13 2 1 8 4 2 13 1 0 11 23 17 21 1 0 10 2 0 17 2 0 42 1 0 17 1 0 56 1 0 37 4 1 11 2 1 11 1 0 6 1 0 8 chain 73788 chr12 133851895 + 9488923 9489945 MER11A 1151 - 5 1151 46626 9 0 1 6 3 1 28 1 2 25 6 0 102 0 1 50 0 1 30 24 55 145 5 6 32 2 1 104 12 13 88 5 6 51 0 1 94 4 0 28 1 0 112 0 99 55 chain 382724 chr12 133851895 + 9507412 9512296 L1PA6 6164 - 5 4716 10671 414 0 6 98 9 28 110 311 0 276 0 24 354 0 1 193 0 5 92 2 1 195 0 4 188 0 4 44 0 1 646 0 73 96 1 3 26 0 5 82 0 1 11 17 0 35 0 4 814 0 1 57 0 1 806 0 5 7 chain 4354 chr12 133851895 + 9515625 9515695 MIRc 230 - 115 185 202524 49 6 6 15 chain 28051 chr12 133851895 + 9516743 9517188 LTR46 455 - 0 455 92823 40 21 22 89 15 20 87 11 9 102 1 2 10 0 7 38 10 8 21 chain 39118 chr12 133851895 + 9544774 9545245 LTR15 485 + 0 475 70579 150 0 2 125 0 4 68 3 4 86 4 0 17 0 1 18 chain 11577 chr12 133851895 + 9558900 9559049 HERVE-int 4064 + 2118 2264 154003 93 3 0 53 chain 51138 chr12 133851895 + 9559900 9560502 HERVE-int 4064 + 2118 2717 58228 93 3 0 506 chain 3271 chr12 133851895 + 9602509 9602623 LTR12C 1709 - 872 961 164499 15 30 5 69 chain 16762 chr12 133851895 + 9602623 9602916 LTR12C 1709 - 517 777 136220 33 30 26 15 31 1 4 0 1 180 chain 22275 chr12 133851895 + 9604295 9604555 AluY 311 + 50 304 119016 76 6 0 178 chain 22315 chr12 133851895 + 9614473 9614754 AluY 311 + 28 309 118848 103 0 2 42 7 5 129 chain 3814 chr12 133851895 + 9617199 9617244 MLT1J 494 - 337 382 210174 45 chain 10494 chr12 133851895 + 9628408 9628540 L1PB1 5432 + 3038 3170 158273 132 chain 32680 chr12 133851895 + 9633979 9634395 L1PA5 6144 + 5729 6144 79719 253 7 9 6 1 0 138 2 0 9 chain 147728 chr12 133851895 + 9646617 9648325 L1PA5 6144 - 12 1735 24918 358 3 20 764 6 3 264 0 1 313 chain 120181 chr12 133851895 + 9648327 9649750 L1PA7 6471 + 5047 6468 30997 1273 0 1 133 3 0 14 chain 545177 chr12 133851895 + 9674150 9680168 L1PA3long 6157 - 0 6157 2054 1793 0 4 1723 0 5 1586 1 0 142 7 135 404 0 1 211 0 1 81 0 1 70 chain 20327 chr12 133851895 + 9697216 9697447 L1PA3long 6157 + 5910 6141 126153 231 chain 50094 chr12 133851895 + 9719631 9720228 HERVE-int 4064 - 1347 1942 58948 495 0 1 10 3 0 89 chain 50438 chr12 133851895 + 9721199 9721801 HERVE-int 4064 - 1347 1946 58686 506 3 0 93 chain 3578 chr12 133851895 + 9729690 9729770 MLT1C 463 + 63 137 214006 39 28 22 13 chain 274279 chr12 133851895 + 9732036 9735046 L1PA2 6032 + 3007 6029 14965 134 0 1 4 11 14 100 1 0 1422 0 5 495 0 4 843 chain 73949 chr12 133851895 + 9753060 9754028 LTR5_Hs 974 + 0 974 46540 173 7 6 110 0 1 180 0 1 185 1 0 115 0 1 47 8 15 19 20 18 103 chain 48932 chr12 133851895 + 9757441 9758022 L1PA6 6164 - 4 586 59788 221 0 1 360 chain 143936 chr12 133851895 + 9761198 9762894 L1PA5 6144 - 2 1715 25490 7 4 0 18 8 22 371 1 0 117 0 6 527 0 1 102 0 1 541 chain 395939 chr12 133851895 + 9762952 9767702 L1P2 5180 + 2 4797 10246 136 4 15 94 1 0 261 1 0 7 1 0 163 1 2 107 1 0 6 1 0 140 0 25 249 0 1 375 0 3 275 4 0 388 5 6 212 2 1 345 0 4 26 0 10 320 1 0 1624 chain 517316 chr12 133851895 + 9779894 9785982 L1PA5 6144 - 9 6144 5444 518 1 15 85 1 0 630 0 8 1326 0 1 355 0 1 36 1 0 324 0 10 24 0 4 490 3 0 347 9 6 107 4 0 136 0 1 542 9 0 135 1 0 4 1 2 423 5 8 429 0 12 10 1 15 131 chain 22313 chr12 133851895 + 9797720 9798070 THE1B 368 + 0 366 118859 44 0 15 48 0 1 47 29 27 18 7 9 84 1 0 13 3 4 56 chain 6011 chr12 133851895 + 9809644 9809713 THE1-int 844 + 561 630 185131 69 chain 63661 chr12 133851895 + 9825041 9825946 L1PA10 4194 - 2973 3870 51164 85 0 11 627 0 9 7 21 10 67 1 0 11 4 0 12 8 0 11 1 0 4 27 26 6 2 0 11 chain 215527 chr12 133851895 + 9834966 9837740 L1PA7 6471 - 3 2765 18133 9 2 0 503 0 24 40 3 1 270 1 0 128 27 2 287 1 0 78 0 1 168 4 2 372 22 20 66 30 27 376 0 1 90 0 1 177 1 0 119 chain 45052 chr12 133851895 + 9849692 9850205 MER9a2 513 + 0 513 62995 513 chain 7410 chr12 133851895 + 9860173 9860273 LTR1 825 + 723 825 174700 8 0 1 62 3 4 27 chain 127967 chr12 133851895 + 9860421 9862383 HUERS-P2-int 2744 + 36 1969 28575 7 0 3 8 1 0 32 2 0 4 1 0 30 78 70 36 131 109 44 9 0 13 1 0 5 0 1 35 1 0 8 2 0 13 12 19 250 0 2 12 14 12 156 5 9 10 13 7 29 8 9 42 2 6 671 0 4 277 chain 29391 chr12 133851895 + 9865526 9866187 LTR2B 499 - 0 490 87111 182 1 0 8 14 15 30 0 5 11 6 1 53 215 30 31 13 32 32 4 0 55 1 0 5 chain 21170 chr12 133851895 + 9872937 9873236 AluSp 311 - 12 311 123308 55 15 14 78 0 1 31 1 0 58 22 23 39 chain 114979 chr12 133851895 + 9891349 9892738 LTR12C 1709 - 0 1709 32799 389 5 13 54 1 0 25 0 4 106 12 328 236 12 6 368 1 0 180 chain 2884 chr12 133851895 + 9929690 9929721 LTR49 580 + 478 509 227278 31 chain 33040 chr12 133851895 + 9930940 9931338 MLT2A2 560 + 0 399 79154 266 0 1 132 chain 86682 chr12 133851895 + 9953446 9954574 L1PA8 5853 - 6 1126 40890 89 1 0 17 2 1 45 18 17 69 2 0 45 1 0 499 0 1 48 1 0 4 1 3 8 4 0 274 chain 113274 chr12 133851895 + 9954577 9955967 L1PA8 5853 + 3337 4755 33290 348 4 5 282 8 34 203 0 1 545 chain 7887 chr12 133851895 + 9965750 9965834 L1PA3long 6157 - 1 85 171765 84 chain 29837 chr12 133851895 + 9986521 9986934 LTR7 482 - 42 482 85325 55 1 0 14 1 0 55 21 53 147 16 15 49 2 0 52 chain 321826 chr12 133851895 + 9998437 10002641 L1P3 4156 - 19 4155 12529 22 3 2 8 4 2 95 0 1 486 0 1 683 0 6 193 69 38 227 0 3 5 10 7 227 1 0 520 0 1 95 61 0 309 0 1 36 0 11 55 4 5 123 3 6 218 1 0 190 4 3 156 2 0 71 1 0 10 2 1 59 6 15 245 chain 21734 chr12 133851895 + 10003248 10003487 L1PA2 6032 - 0 239 121263 239 chain 106247 chr12 133851895 + 10027905 10029204 LTR12C 1709 - 0 1709 35198 74 1 0 8 1 0 286 0 1 80 0 1 31 0 4 102 8 6 4 1 0 95 0 278 224 0 139 28 9 1 347 chain 26414 chr12 133851895 + 10045179 10045477 AluSp 311 - 8 306 98357 298 chain 247786 chr12 133851895 + 10051379 10054829 MER61-int 3695 - 5 3363 16366 53 4 5 193 5 0 92 8 2 88 0 1 4 10 9 26 82 0 59 0 1 275 30 29 88 1 0 150 6 5 124 0 1 61 1 0 4 0 1 233 0 3 11 5 6 596 3 1 34 9 7 32 2 6 146 1 0 4 0 1 91 0 1 394 10 8 10 0 1 190 1 0 102 6 5 61 6 4 58 8 9 73 chain 6503 chr12 133851895 + 10055171 10055239 LTR12C 1709 + 1293 1361 181216 68 chain 119853 chr12 133851895 + 10066841 10068466 L1PA8 5853 + 4224 5853 31104 112 1 0 463 14 20 187 1 8 73 2 0 386 2 1 90 4 3 41 2 0 51 30 29 9 3 4 42 1 0 17 8 7 86 chain 10308 chr12 133851895 + 10071080 10071276 L1PA13 3608 - 120 303 159100 22 1 0 14 13 9 5 0 1 4 1 0 37 2 0 9 1 0 33 11 7 13 1 0 29 chain 77937 chr12 133851895 + 10075768 10076726 L1PA5 6144 + 5220 6144 44553 77 1 5 44 0 1 623 43 6 113 2 0 55 chain 5858 chr12 133851895 + 10102903 10102970 L1MB3 1562 + 1226 1293 186601 67 chain 164215 chr12 133851895 + 10104812 10106821 SVA_F 1814 + 10 1814 22780 926 0 1 11 3 18 128 98 0 46 130 0 621 0 1 36 0 6 10 chain 2415 chr12 133851895 + 10105938 10105963 SVA_F 1814 + 1152 1177 185360 25 chain 10880 chr12 133851895 + 10106026 10106154 SVA_F 1814 + 966 1091 115861 35 1 0 10 1 0 54 1 0 26 chain 11272 chr12 133851895 + 10108811 10109060 LOR1-int 1871 - 656 900 155154 31 6 10 38 7 6 9 1 0 4 2 3 18 4 0 8 26 25 58 7 4 30 chain 27113 chr12 133851895 + 10110126 10110497 MER4A 717 - 241 717 95889 67 0 1 203 2 106 69 0 1 4 6 5 20 chain 9677 chr12 133851895 + 10113520 10113661 MER4B 649 - 16 158 162207 53 1 3 15 1 0 34 1 0 4 0 1 32 chain 29064 chr12 133851895 + 10115044 10115442 LTR7 482 - 9 482 88699 181 0 31 36 0 1 29 6 11 69 8 46 69 chain 241041 chr12 133851895 + 10117856 10120866 HERVH-int 3825 - 705 3825 16719 580 0 1 440 8 13 129 0 1 1177 1 0 14 10 161 21 7 6 7 1 0 35 57 0 50 13 16 103 9 14 20 2 1 89 0 5 237 chain 1621 chr12 133851895 + 10120286 10120343 HERVH-int 3825 - 3082 3233 195738 25 21 115 11 chain 25113 chr12 133851895 + 10120877 10121289 LTR7 482 - 9 482 104207 106 1 2 46 0 1 26 0 31 26 10 11 107 59 86 31 chain 5198 chr12 133851895 + 10121416 10121480 L1MA4 2864 - 418 482 193038 64 chain 22134 chr12 133851895 + 10127418 10127752 THE1B 368 + 0 345 119651 169 1 0 32 29 42 63 7 6 33 chain 117314 chr12 133851895 + 10127775 10129302 THE1B-int 1605 + 0 1590 32021 184 0 21 225 1 26 104 14 15 229 2 0 497 1 2 5 0 8 165 0 8 84 0 1 16 chain 11629 chr12 133851895 + 10129316 10129486 THE1B 368 + 0 169 153780 103 19 18 48 chain 2201 chr12 133851895 + 10129487 10129510 THE1B 368 + 169 192 236560 23 chain 7027 chr12 133851895 + 10129553 10129678 THE1B 368 + 243 368 177280 61 9 8 27 10 11 18 chain 5025 chr12 133851895 + 10137735 10137855 MER4B 649 - 356 557 194878 50 22 104 18 14 13 16 chain 6480 chr12 133851895 + 10140605 10140691 THE1C-int 1605 + 1504 1591 181397 53 1 2 32 chain 100572 chr12 133851895 + 10140840 10141971 L1PA4 6152 + 5017 6150 36610 283 0 1 245 0 1 603 chain 14235 chr12 133851895 + 10157387 10157546 L1PA5 6144 - 21 180 143780 159 chain 3125 chr12 133851895 + 10157556 10157590 LTR1B 797 - 756 790 222445 34 chain 13985 chr12 133851895 + 10165002 10165159 L1PA3long 6157 - 0 157 144632 157 chain 34964 chr12 133851895 + 10178832 10179292 L1PA8 5853 + 5400 5852 76238 166 1 0 42 2 0 70 21 18 44 2 1 19 2 1 91 chain 24626 chr12 133851895 + 10179331 10179677 THE1B 368 + 0 368 106852 169 1 0 18 14 39 4 1 0 10 1 0 128 chain 43323 chr12 133851895 + 10182571 10183082 MER9a1 513 + 0 513 65007 454 0 2 57 chain 28712 chr12 133851895 + 10200549 10200853 AluYb8 318 + 0 303 90284 23 1 0 280 chain 19636 chr12 133851895 + 10239822 10240065 L1PBa 3878 + 3283 3526 128294 243 chain 332111 chr12 133851895 + 10257735 10261602 L1PA6 6164 + 2278 6160 12124 282 4 0 317 3 0 113 0 4 195 0 1 333 0 1 847 0 1 277 1 0 77 1 8 562 0 4 12 0 4 325 11 17 495 5 0 7 chain 68063 chr12 133851895 + 10265609 10266646 L1PB3 3668 + 2529 3566 49218 21 1 0 39 0 15 63 2 1 272 3 0 48 2 0 17 0 1 4 3 0 126 2 0 53 1 0 46 0 12 43 1 0 60 1 5 17 3 1 16 15 14 75 23 7 18 2 0 21 9 7 20 0 5 10 chain 5808 chr12 133851895 + 10267455 10267542 MADE1 96 + 4 96 187066 40 7 8 26 0 4 14 chain 7552 chr12 133851895 + 10269033 10269121 L1PA8 5853 - 0 88 173849 88 chain 28869 chr12 133851895 + 10276078 10276383 AluYb8 318 + 0 305 89592 305 chain 23134 chr12 133851895 + 10288856 10289135 AluSp 311 - 24 301 114974 155 2 0 122 chain 22278 chr12 133851895 + 10338363 10338652 AluSp 311 + 4 294 119002 47 12 13 230 chain 26720 chr12 133851895 + 10348084 10348385 L1PA4 6152 + 5850 6151 97261 301 chain 59691 chr12 133851895 + 10349376 10350459 MER4E1 777 + 0 776 52999 22 12 13 118 0 3 113 315 0 25 0 1 226 0 11 12 14 6 226 chain 23270 chr12 133851895 + 10364569 10364841 AluSp 311 - 30 310 114339 240 0 8 32 chain 137385 chr12 133851895 + 10377114 10378796 LTR12C 1709 - 0 1709 26577 205 1 0 157 0 2 117 0 4 107 3 1 5 1 0 253 0 40 140 15 19 113 15 0 232 1 0 4 0 1 22 9 5 85 0 1 88 5 4 104 chain 21642 chr12 133851895 + 10400211 10400569 THE1C 375 + 7 375 121608 81 1 0 94 51 51 25 9 20 97 chain 13513 chr12 133851895 + 10419542 10419686 L1PA4 6152 - 9 153 146307 144 chain 33375 chr12 133851895 + 10444243 10444688 L1PA8 5853 - 6 444 78609 87 1 0 19 2 1 49 13 11 70 2 0 46 1 0 155 chain 41067 chr12 133851895 + 10451077 10451586 MER9a3 513 + 0 513 67816 18 0 2 153 4 5 255 4 5 75 chain 24692 chr12 133851895 + 10465306 10465614 AluY 311 + 0 308 106483 64 1 3 65 0 1 170 3 0 5 chain 38335 chr12 133851895 + 10469378 10469854 L1PA8 5853 - 0 470 71674 93 1 0 16 1 0 56 1 0 8 6 5 65 2 0 48 1 0 46 0 1 132 chain 40188 chr12 133851895 + 10485579 10486027 LTR7 482 - 5 482 69047 185 0 31 12 2 0 249 chain 293591 chr12 133851895 + 10487230 10490789 HERVH-int 3825 - 9 3825 13794 478 8 218 31 0 3 5 10 12 1353 8 35 239 0 1 215 15 0 447 1 0 49 2 1 7 0 20 45 24 0 22 0 31 24 1 0 10 1 0 38 5 0 309 0 11 212 chain 39427 chr12 133851895 + 10490791 10491242 LTR7 482 - 0 482 70122 98 6 8 93 0 29 254 chain 23958 chr12 133851895 + 10493648 10494056 L1PA11 4918 - 351 740 110577 13 1 0 15 10 6 11 2 0 5 3 0 7 5 0 22 1 0 16 12 13 52 2 0 13 2 1 65 1 0 150 chain 267950 chr12 133851895 + 10497057 10500000 L1PA3long 6157 - 15 2962 15296 828 0 4 2115 chain 224323 chr12 133851895 + 10500000 10502541 L1HS 6032 - 2965 6029 17633 12 7 8 5 2 0 1021 0 1 906 1 0 492 0 524 95 chain 173546 chr12 133851895 + 10503985 10506122 L1PA8A 6298 - 7 2159 21643 5 0 2 177 0 1 124 5 4 45 0 1 229 0 4 209 2 1 584 1 2 19 6 5 54 1 0 233 0 1 113 0 2 120 0 1 46 0 3 154 0 3 10 chain 22933 chr12 133851895 + 10509573 10510032 L1PB1 5432 - 12 435 115945 16 1 0 34 2 0 24 1 0 14 8 5 18 18 7 6 2 0 16 5 4 41 4 3 11 2 1 51 2 0 11 6 2 9 1 0 9 10 9 15 1 0 5 10 6 106 chain 8444 chr12 133851895 + 10510060 10510167 L1PA8 5853 - 0 105 168599 6 1 0 87 1 0 12 chain 44084 chr12 133851895 + 10512424 10513020 MER4E1 777 - 183 766 64118 44 18 0 4 1 0 9 6 4 159 6 11 66 0 1 121 0 1 156 0 1 6 chain 41065 chr12 133851895 + 10514739 10515258 LTR10C 591 + 0 591 67819 106 0 72 332 6 1 10 8 13 57 chain 36324 chr12 133851895 + 10515931 10516396 LTR15 485 + 0 477 74469 75 1 0 48 0 1 26 0 2 100 0 4 21 0 4 68 0 1 102 6 7 18 chain 37681 chr12 133851895 + 10520530 10520979 LTR15 485 + 0 456 72574 150 0 2 125 0 4 66 2 3 106 chain 44730 chr12 133851895 + 10524339 10524857 LTR10C 591 + 0 591 63353 106 0 72 332 0 1 80 chain 43718 chr12 133851895 + 10547223 10547782 LTR5A 1029 + 0 1029 64547 50 0 455 269 0 10 87 12 11 69 0 2 44 0 4 28 chain 3280 chr12 133851895 + 10559226 10559263 L1MDb 1215 + 65 102 219345 37 chain 30354 chr12 133851895 + 10566238 10566574 L1PA6 6164 - 8 344 83764 336 chain 18460 chr12 133851895 + 10567169 10567370 L1PA4 6152 + 5951 6152 131615 201 chain 14858 chr12 133851895 + 10579777 10580028 L1MA2 4263 + 3872 4112 141763 62 33 31 93 7 0 18 1 0 30 1 0 6 chain 14858 chr12 133851895 + 10595200 10595451 L1MA2 4263 + 3872 4112 141762 62 33 31 93 7 0 18 1 0 30 1 0 6 chain 516898 chr12 133851895 + 10625228 10631689 L1PA5 6144 - 6 6144 5497 105 42 1 1410 1 0 250 0 1 21 0 1 665 1 5 387 27 15 198 302 4 107 0 2 437 0 1 1298 0 1 58 9 0 162 1 0 310 1 2 332 4 5 148 1 2 32 7 19 24 4 18 117 chain 13620 chr12 133851895 + 10631771 10632008 L1PB2 3958 + 3571 3838 145901 29 20 19 54 7 6 69 18 50 40 chain 520671 chr12 133851895 + 10633974 10640424 L1PA7 6471 + 0 6466 5086 410 0 2 187 5 12 245 1 2 168 0 1 211 0 4 47 14 0 147 4 6 28 0 1 855 14 15 172 0 1 194 4 7 477 1 4 288 1 2 511 1 0 4 0 1 205 0 1 66 0 2 305 0 3 37 1 0 47 0 4 47 0 1 344 1 0 283 0 9 258 0 1 12 5 1 482 7 0 132 1 0 200 1 0 12 3 0 12 chain 189386 chr12 133851895 + 10669149 10671214 L1PA3long 6157 - 1940 4017 20109 942 0 1 732 0 3 110 0 8 281 chain 175402 chr12 133851895 + 10671214 10673119 L1PA3long 6157 + 4251 6157 21410 294 0 1 1611 chain 119471 chr12 133851895 + 10689631 10691203 THE1B-int 1605 - 0 1605 31233 9 0 1 118 22 23 284 0 4 323 9 8 89 4 5 284 0 25 177 4 5 157 4 5 88 chain 30132 chr12 133851895 + 10703501 10703817 AluYb8 318 + 0 316 84374 316 chain 182893 chr12 133851895 + 10717098 10719278 L1PA7 6471 - 12 2186 20689 856 0 4 23 0 1 77 9 1 67 0 2 471 11 2 277 0 4 389 chain 5308 chr12 133851895 + 10719278 10719337 L1PA7 6471 + 4226 4285 189299 59 chain 79867 chr12 133851895 + 10723866 10724835 LTR5_Hs 974 - 0 974 43656 63 1 0 6 0 1 121 7 7 116 0 1 197 0 4 458 chain 67873 chr12 133851895 + 10733080 10734214 LTR12 884 + 0 884 49299 24 1 0 120 196 0 31 66 0 201 2 0 45 0 1 142 0 12 63 8 11 58 1 0 176 chain 6690 chr12 133851895 + 10733237 10733421 LTR12 884 + 90 276 131999 65 5 7 114 chain 28120 chr12 133851895 + 10734887 10735272 L1PA8 5853 + 5467 5846 92572 58 0 1 38 1 0 43 2 0 71 2 1 8 2 0 5 4 5 41 4 3 19 1 0 86 chain 25869 chr12 133851895 + 10800267 10800622 THE1B 368 + 0 368 100573 44 0 15 60 7 12 38 1 0 23 6 0 176 chain 5066 chr12 133851895 + 10823528 10823589 MLT1D 503 + 4 65 194466 61 chain 26916 chr12 133851895 + 10840093 10840455 THE1C 375 + 8 375 96571 114 3 0 7 1 11 118 1 0 92 2 1 24 chain 4481 chr12 133851895 + 10865529 10865599 L1PB1 5432 + 5334 5400 201003 12 3 1 23 1 0 22 1 0 8 chain 424650 chr12 133851895 + 10895891 10900954 L1PA6 6164 - 4 6151 9427 5 2 0 149 1 2 655 0 6 27 0 4 276 0 1 349 8 7 39 0 14 500 0 1 945 1 0 854 0 1 110 0 2 40 0 1042 270 1 15 159 1 2 112 0 1 62 11 10 303 0 1 183 chain 89846 chr12 133851895 + 10933948 10934972 L1PA4 6152 + 5110 6150 39706 190 0 6 790 0 10 44 chain 44153 chr12 133851895 + 10937419 10938283 L1PA6 6164 - 17 567 64006 347 320 0 100 0 6 97 chain 28377 chr12 133851895 + 10937778 10938086 AluYa5 310 - 2 310 91674 308 chain 15603 chr12 133851895 + 10984833 10985012 L1PA2 6032 + 5847 6025 139574 39 0 1 132 2 0 6 chain 9428 chr12 133851895 + 10991394 10991497 L1PA5 6144 - 6 109 163419 103 chain 3721 chr12 133851895 + 11022180 11022220 L1PA3long 6157 + 6117 6157 211636 40 chain 2974 chr12 133851895 + 11070530 11070594 MSTB2 466 + 318 383 225550 27 19 20 18 chain 4652 chr12 133851895 + 11071029 11071084 MSTB1 431 + 376 431 199042 55 chain 29364 chr12 133851895 + 11075417 11075726 AluYb8 318 - 9 318 87227 309 chain 44843 chr12 133851895 + 11077123 11077657 L1P1 4361 - 740 1273 63237 424 1 0 109 chain 8321 chr12 133851895 + 11077717 11077820 MER61F 604 + 471 572 169278 63 2 0 38 chain 90865 chr12 133851895 + 11097895 11098960 MER11C 1089 - 10 1082 39333 105 0 1 374 0 1 120 0 1 156 0 4 310 chain 27127 chr12 133851895 + 11192992 11193317 L1PA7 6471 + 6138 6465 95839 185 0 5 131 3 0 6 chain 35578 chr12 133851895 + 11202677 11203185 MER9a3 513 - 0 513 75441 55 1 4 18 1 2 242 21 22 5 1 0 54 10 11 56 2 0 29 0 2 13 chain 2974 chr12 133851895 + 11245200 11245284 LTR12F 595 - 339 380 225575 10 43 0 31 chain 19469 chr12 133851895 + 11252056 11252301 AluSc 308 + 41 285 128756 216 1 0 28 chain 163572 chr12 133851895 + 11254374 11256282 L1PA5 6144 + 4213 6129 22866 232 0 3 180 1 0 284 0 1 293 0 2 86 1 0 224 1 2 163 0 2 380 1 2 62 chain 29123 chr12 133851895 + 11258532 11258838 AluYk12 309 - 3 309 88443 306 chain 490152 chr12 133851895 + 11260969 11267260 L1PA7 6471 + 0 6467 7358 227 32 32 150 1 2 489 3 4 452 1 0 29 0 1 109 12 15 274 0 1 198 0 2 5 4 3 67 12 13 68 0 11 50 0 2 33 0 1 106 2 0 6 0 2 50 2 1 116 0 2 115 1 2 285 0 1 1426 0 3 115 0 1 138 0 2 228 0 85 253 0 1 20 1 0 9 1 0 310 0 1 41 5 64 65 26 22 66 0 4 448 6 8 49 38 32 8 0 5 139 chain 143203 chr12 133851895 + 11300389 11301953 L1PA3long 6157 - 1501 3069 25614 15 0 2 692 0 1 251 0 1 606 chain 135112 chr12 133851895 + 11301953 11303429 L1PA3long 6157 + 4681 6157 26974 1476 chain 16760 chr12 133851895 + 11304679 11304868 L1PA4 6152 - 0 186 136229 5 3 0 181 chain 3299 chr12 133851895 + 11353780 11353820 MLT1H2 457 - 22 62 218995 40 chain 136798 chr12 133851895 + 11365514 11367032 L1PA3long 6157 - 5 1525 26681 773 0 1 487 0 1 258 chain 22369 chr12 133851895 + 11367032 11367282 L1PA3long 6157 + 4315 4565 116949 250 chain 384690 chr12 133851895 + 11371122 11376702 L1PB1 5432 + 108 5427 10620 143 11 12 20 0 1 267 0 1 50 1 0 97 10 11 52 0 13 308 195 0 88 0 1 82 11 12 63 0 2 74 1 25 79 0 8 203 0 13 187 26 3 329 0 1 112 23 15 120 0 3 176 0 1 150 3 0 155 1 7 28 9 33 73 0 1 45 0 2 36 6 7 40 2 9 13 0 2 441 8 18 222 0 1 29 0 1 311 0 1 4 1 0 17 0 1 155 16 18 128 3 0 15 0 1 167 1 2 117 0 1 172 1 2 9 126 0 24 1 0 9 1 0 4 22 16 53 3 2 15 2 1 42 1 0 16 15 2 29 2 0 5 5 4 10 2 0 8 7 6 10 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 20809 chr12 133851895 + 11390385 11390616 AluYa5 310 - 2 230 124573 26 2 0 156 1 0 46 chain 48036 chr12 133851895 + 11403556 11404223 L1PA8 5853 - 0 623 60452 93 1 0 19 3 2 24 38 0 36 1 0 71 2 0 44 1 0 206 2 1 4 0 1 122 chain 323866 chr12 133851895 + 11408981 11413090 L1P3 4156 + 18 4139 12444 233 2 1 22 4 3 6 0 1 36 1 0 992 22 6 174 0 1 280 0 1 855 0 1 30 0 1 52 0 5 40 0 2 300 0 1 119 16 39 388 0 3 22 0 1 182 17 11 281 2 0 7 3 2 23 chain 50392 chr12 133851895 + 11415211 11415892 L1PA8 5853 + 5179 5853 58720 383 1 0 48 2 0 69 36 34 25 4 3 19 1 0 93 chain 27135 chr12 133851895 + 11427555 11427865 L1PA5 6144 + 5827 6137 95812 310 chain 34232 chr12 133851895 + 11439150 11439568 L1PA6 6164 + 5744 6162 77306 418 chain 23743 chr12 133851895 + 11439581 11441504 L1PA8 5853 + 2750 4685 18135 270 0 1 191 1 2 180 2 1 247 18 22 89 0 1 118 0 1 186 0 4 306 0 1 315 chain 17744 chr12 133851895 + 11441627 11441840 L1P1 4361 - 33 244 133582 23 1 0 157 1 0 31 chain 523078 chr12 133851895 + 11443170 11449295 L1PA4 6152 + 6 6144 4857 122 14 0 14 1 15 418 2 1 132 12 5 513 11 0 9 0 11 138 0 1 470 0 1 1314 0 1 120 0 1 222 1 2 101 0 3 280 0 6 669 0 7 719 1 0 666 0 1 23 2 1 46 0 1 105 chain 15656 chr12 133851895 + 11449300 11450568 L1PA8 5853 + 4685 5470 18135 36 8 9 59 0 1 161 4 5 54 7 5 67 0 2 104 487 0 252 3 4 26 chain 556520 chr12 133851895 + 11450590 11456619 L1PA2 6032 + 1 6032 670 3329 0 2 2700 chain 4815 chr12 133851895 + 11456640 11457030 L1PA8 5853 + 5470 5853 18135 94 1 0 46 2 0 69 21 19 42 3 2 18 1 0 93 chain 493217 chr12 133851895 + 11467683 11473307 L1PA4 6152 + 6 6152 7213 90 0 525 1501 1 0 78 0 2 905 1 0 76 7 6 102 4 5 643 2 0 696 1 0 1517 chain 497267 chr12 133851895 + 11487347 11493484 L1PA5 6144 - 1 6143 6998 849 1 0 138 0 1 503 1 2 258 0 2 398 0 2 314 7 8 38 2 1 126 1 0 59 0 1 183 0 2 245 0 3 192 0 1 280 0 1 180 0 1 41 1 2 65 0 2 50 0 2 745 0 4 23 12 13 239 13 4 94 8 9 102 35 10 652 0 1 162 8 22 112 chain 70429 chr12 133851895 + 11511178 11511975 L1PA4 6152 + 5353 6151 48199 648 4 5 145 chain 12298 chr12 133851895 + 11520978 11521244 L1PB1 5432 - 12 254 151017 16 1 0 8 5 4 22 3 2 22 3 1 13 1 0 5 2 0 19 29 16 13 1 0 41 2 1 16 2 1 42 chain 10274 chr12 133851895 + 11525784 11526003 LTR12 884 - 681 827 159258 22 49 1 90 25 0 33 chain 521580 chr12 133851895 + 11530131 11536241 L1PA4 6152 + 30 6143 5001 1067 13 10 6 0 3 116 0 1 1643 0 1 337 2 1 667 1 0 4 0 1 375 0 3 615 12 12 357 1 0 563 1 0 192 7 8 131 chain 11115 chr12 133851895 + 11536375 11536635 L1PB1 5432 - 16 254 155755 12 1 0 13 5 4 17 1 0 24 5 4 10 1 0 5 2 0 14 33 21 12 1 0 42 8 7 10 2 1 42 chain 54644 chr12 133851895 + 11537449 11538084 L1PA5 6144 + 5502 6144 55937 25 0 1 565 1 7 44 chain 11526 chr12 133851895 + 11560163 11560426 L1PB1 5432 - 12 251 154194 16 1 0 8 5 4 22 1 0 24 27 22 16 29 16 11 1 0 45 1 0 15 2 1 39 chain 64634 chr12 133851895 + 11564307 11565189 LTR12 884 - 0 884 50734 227 24 24 5 0 3 48 6 7 192 2 0 40 1 2 310 2 1 25 chain 505484 chr12 133851895 + 11569146 11575066 L1PA4 6152 + 30 6143 6495 72 1 2 23 0 14 834 0 1 110 17 18 243 0 1 511 0 1 79 0 1 416 0 1 159 1 0 677 1 2 743 0 1 409 0 4 77 1 0 90 0 1 209 5 169 354 1 0 876 0 4 11 chain 54365 chr12 133851895 + 11605962 11606751 L1PA13 3608 - 120 903 56123 22 1 0 18 2 0 4 2 0 48 10 7 24 2 3 27 1 0 40 23 21 47 0 4 63 1 0 27 2 1 128 0 1 254 6 7 37 chain 57327 chr12 133851895 + 11611302 11611953 SVA_A 1864 + 1208 1864 54322 195 1 6 455 chain 40422 chr12 133851895 + 11615102 11615553 LTR7 482 - 0 482 68701 191 0 31 260 chain 299545 chr12 133851895 + 11616819 11620502 HERVH-int 3825 - 9 3825 13451 227 0 4 247 8 218 770 0 4 321 0 10 299 4 31 462 15 0 444 1 0 49 2 1 8 21 0 65 0 37 16 8 0 3 106 0 20 1 0 10 1 0 38 5 0 532 chain 38876 chr12 133851895 + 11620504 11620954 LTR7 482 - 0 482 70905 200 1 32 24 0 1 225 chain 29083 chr12 133851895 + 11622115 11622605 L1PA14 3548 + 2974 3442 88621 19 18 15 104 10 6 13 9 6 84 1 0 56 1 0 55 1 0 9 4 0 38 4 2 12 15 13 9 1 0 27 chain 23877 chr12 133851895 + 11626209 11626568 THE1B 368 + 0 368 111040 169 1 0 21 43 53 125 chain 119996 chr12 133851895 + 11631517 11632834 L1PA3long 6157 - 0 1317 31062 1317 chain 2825 chr12 133851895 + 11636841 11636872 MIRb 242 - 120 151 228297 31 chain 9042 chr12 133851895 + 11644642 11644772 Ricksha_b 1102 - 281 415 165371 69 6 10 55 chain 13797 chr12 133851895 + 11676371 11676530 L1PA3long 6157 - 0 160 145281 142 0 1 17 chain 16795 chr12 133851895 + 11682551 11682742 L1PA4 6152 + 5961 6152 136124 191 chain 151625 chr12 133851895 + 11683325 11685072 L1P1 4361 - 20 1764 24382 12 2 1 23 1 0 157 1 0 989 1 0 457 1 3 4 1 0 98 chain 74011 chr12 133851895 + 11689258 11690210 L1PA8 5853 + 4924 5853 46505 73 3 0 6 1 0 4 1 3 193 25 11 350 1 0 43 7 5 70 1 0 11 1 0 47 5 4 15 1 0 94 chain 6856 chr12 133851895 + 11694797 11695039 MER53 195 + 0 195 178536 30 38 15 4 1 0 48 84 62 18 1 0 18 chain 5026 chr12 133851895 + 11699413 11699474 U7 62 + 1 62 194861 61 chain 104613 chr12 133851895 + 11700044 11701326 LTR12C 1709 + 0 1709 35593 37 0 1 253 6 7 40 0 43 83 0 1 185 0 278 184 1 0 4 4 2 97 0 1 8 0 4 212 0 101 86 1 0 17 0 1 64 chain 5534 chr12 133851895 + 11712074 11712144 L1MC3 1789 - 1628 1698 189720 70 chain 33949 chr12 133851895 + 11720445 11721387 L1PB4 2604 - 108 693 77695 28 11 13 39 419 60 23 12 14 34 5 4 170 5 1 69 0 3 45 0 3 6 3 0 73 chain 30105 chr12 133851895 + 11762706 11763129 LTR7B 505 - 8 505 84466 43 18 17 43 0 1 4 0 1 26 1 0 80 0 2 24 1 0 6 3 66 69 0 10 105 chain 287389 chr12 133851895 + 11764336 11767770 HERVH-int 3825 - 0 3825 14195 225 0 2 260 8 218 39 32 34 749 0 1 52 0 4 220 0 10 295 4 31 461 15 0 421 0 8 16 1 0 63 0 20 40 1 0 25 3 0 13 1 0 14 1 107 94 0 13 57 1 0 110 0 11 22 2 1 189 chain 30167 chr12 133851895 + 11767778 11768228 LTR7B 505 - 8 505 84280 43 14 13 31 0 2 19 0 1 26 1 0 82 0 2 22 2 1 5 0 25 28 6 13 66 0 10 8 3 6 94 chain 13461 chr12 133851895 + 11771399 11771606 L1PA8 5853 + 5650 5853 146483 29 1 0 8 2 1 45 13 12 15 2 1 92 chain 40993 chr12 133851895 + 11774885 11775422 MER41A 554 + 0 554 67917 92 0 1 70 1 0 209 11 28 154 chain 112520 chr12 133851895 + 11834525 11835894 L1PA7 6471 - 17 1386 33528 138 0 1 37 0 2 18 0 1 364 0 3 272 1 4 15 1 0 168 0 1 90 28 12 52 0 5 147 0 1 38 chain 12910 chr12 133851895 + 11865435 11865701 MLT2D 439 - 8 347 148590 33 51 107 38 35 52 109 chain 11887 chr12 133851895 + 11961412 11961608 MER2 342 + 136 319 152662 7 15 0 35 6 9 59 0 1 47 3 1 24 chain 20792 chr12 133851895 + 12027749 12027985 L1PA4 6152 + 5910 6152 124635 128 0 1 102 0 5 6 chain 4091 chr12 133851895 + 12041798 12041845 Tigger4b 360 - 0 47 206075 47 chain 535818 chr12 133851895 + 12062145 12068250 L1PA4 6152 + 63 6151 3474 183 1 3 66 9 7 132 14 8 114 1 0 270 17 9 381 1 0 198 1 0 119 7 5 393 0 1 983 0 1 273 1 0 731 0 1 1479 2 1 617 0 1 112 chain 61905 chr12 133851895 + 12078589 12079518 L1P4 1494 + 272 1160 51940 10 1 2 262 5 0 110 5 8 56 69 31 32 0 1 81 1 0 117 2 0 5 6 8 25 1 0 107 1 0 33 chain 150324 chr12 133851895 + 12088767 12090410 L1PA2 6032 - 1 1649 24561 780 0 1 64 0 4 799 chain 120803 chr12 133851895 + 12090410 12091704 L1PA2 6032 + 3083 4377 30695 1294 chain 78595 chr12 133851895 + 12123991 12124877 L1PA4 6152 + 4434 5353 44225 191 0 32 364 0 1 331 chain 69936 chr12 133851895 + 12124877 12125658 L1PA4 6152 + 5354 6141 48417 494 0 4 110 0 1 75 0 1 102 chain 35210 chr12 133851895 + 12148350 12149170 MER41A 554 - 0 554 75907 67 332 61 237 7 10 27 0 1 58 6 7 86 chain 8009 chr12 133851895 + 12150945 12151065 MER41B 635 - 0 124 170994 62 11 15 47 chain 27858 chr12 133851895 + 12159581 12159895 AluYf4 310 - 0 310 93499 44 2 0 59 2 0 207 chain 17671 chr12 133851895 + 12203630 12203865 MER30 238 - 0 217 133771 83 0 3 49 21 0 82 chain 24169 chr12 133851895 + 12211405 12211716 LTR7 482 + 125 482 109380 99 0 1 22 0 31 27 0 3 6 0 10 41 1 2 115 chain 297690 chr12 133851895 + 12211718 12215357 HERVH-int 3825 + 0 3825 13541 20 0 1 163 0 4 346 1 0 5 1 0 6 0 1 24 1 0 9 78 25 15 1 0 11 4 1 25 1 0 30 2 0 31 20 0 37 1 2 7 0 2 13 0 3 615 5 12 64 1 0 213 4 31 302 0 10 1042 12 14 36 0 210 268 0 2 225 chain 4002 chr12 133851895 + 12223242 12223292 MIRb 242 + 83 133 207361 50 chain 24141 chr12 133851895 + 12228367 12228646 AluSp 311 - 19 299 109516 44 0 1 235 chain 26082 chr12 133851895 + 12260044 12260340 AluYf4 310 + 10 304 99702 254 2 0 40 chain 26824 chr12 133851895 + 12261839 12262210 THE1C 375 - 0 375 96901 169 15 13 6 0 2 4 0 1 37 1 5 112 1 0 26 chain 29724 chr12 133851895 + 12263353 12263671 AluYb9 318 - 1 318 85747 191 1 0 126 chain 29612 chr12 133851895 + 12297646 12297987 L1PA6 6164 + 5804 6145 86165 341 chain 5164 chr12 133851895 + 12380642 12380743 L1MCa 1829 + 1592 1689 193406 30 2 0 15 20 18 34 chain 23522 chr12 133851895 + 12406360 12406631 L1PA5 6144 - 0 272 113005 238 0 1 33 chain 23588 chr12 133851895 + 12414072 12414353 AluY 311 + 0 299 112640 132 5 6 23 0 17 121 chain 27661 chr12 133851895 + 12421916 12422227 AluYk4 311 + 0 311 94179 311 chain 41084 chr12 133851895 + 12447955 12448843 MER41A 554 - 0 554 67789 145 0 4 42 0 1 52 5 4 117 350 11 119 0 1 58 chain 22894 chr12 133851895 + 12448358 12448666 AluSp 311 - 25 311 116134 226 0 12 16 35 1 31 chain 25440 chr12 133851895 + 12452231 12452517 AluSp 311 - 25 311 102494 286 chain 4257 chr12 133851895 + 12453816 12453896 MLT2B1 522 + 8 84 203787 27 17 6 11 0 7 25 chain 25148 chr12 133851895 + 12465032 12465315 AluY 311 + 14 298 104008 118 0 1 165 chain 29873 chr12 133851895 + 12474443 12474825 MLT2A1 477 + 0 385 85193 142 0 1 25 1 5 31 2 0 181 chain 23098 chr12 133851895 + 12490224 12490501 AluY 311 + 15 287 115153 114 3 0 153 2 0 5 chain 3221 chr12 133851895 + 12490899 12490935 5S 121 - 79 115 220551 36 chain 26949 chr12 133851895 + 12497173 12497850 MLT2A1 477 + 0 385 96458 168 6 3 8 0 1 14 0 1 28 303 0 72 3 15 75 chain 188899 chr12 133851895 + 12562157 12564278 L1PA4 6152 - 1 2121 20156 203 15 7 633 0 4 875 0 1 68 0 2 327 chain 5520 chr12 133851895 + 12565842 12566042 SVA_F 1814 - 0 206 60276 10 0 6 190 chain 88927 chr12 133851895 + 12566042 12567128 SVA_E 1901 - 0 1089 40034 91 0 28 413 0 1 202 98 0 207 6 79 63 1 0 5 chain 7641 chr12 133851895 + 12566748 12566846 SVA_E 1901 - 861 1033 123189 97 0 74 1 chain 11952 chr12 133851895 + 12567157 12567590 SVA_F 1814 - 523 1139 60276 17 1 0 82 49 0 227 0 233 57 chain 3795 chr12 133851895 + 12567257 12567305 SVA_F 1814 - 798 846 106187 48 chain 1876 chr12 133851895 + 12567590 12567619 SVA_F 1814 - 779 808 134493 29 chain 74146 chr12 133851895 + 12567647 12568480 SVA_D 2077 - 1189 2022 46432 162 8 9 508 2 1 153 chain 269704 chr12 133851895 + 12571979 12575120 L1PA6 6164 - 2 3144 15198 6 4 0 1408 0 1 252 8 0 121 0 4 674 1 0 505 7 8 85 0 8 70 chain 25197 chr12 133851895 + 12604535 12604879 AluSc 308 + 0 306 103753 113 37 1 176 2 0 16 chain 23752 chr12 133851895 + 12610321 12610574 AluYf5 307 + 0 253 111767 253 chain 104881 chr12 133851895 + 12624552 12625899 LTR12C 1709 - 0 1709 35533 84 5 4 393 0 4 68 0 47 95 0 278 229 0 3 35 4 5 83 0 43 23 2 0 17 14 16 12 14 14 68 14 0 43 0 1 144 chain 24143 chr12 133851895 + 12668264 12668553 AluSp 311 - 15 303 109506 176 1 0 112 chain 24021 chr12 133851895 + 12678205 12678486 AluSp 311 - 14 300 110213 61 0 1 137 0 4 83 chain 6958 chr12 133851895 + 12680449 12680536 L1PA7 6471 + 6374 6460 177758 78 1 0 8 chain 28903 chr12 133851895 + 12684810 12685117 AluYb8 318 + 0 307 89450 307 chain 21935 chr12 133851895 + 12689697 12689984 AluSp 311 + 8 289 120478 103 2 1 20 1 0 118 5 1 38 chain 20987 chr12 133851895 + 12703515 12703835 L1PA7 6471 + 6181 6470 123964 114 62 31 144 chain 3391 chr12 133851895 + 12704424 12704481 Charlie1a 1436 + 598 655 217274 14 1 0 5 1 2 36 chain 135916 chr12 133851895 + 12718330 12719858 SVA_D 2077 + 16 2075 26853 21 1 6 498 0 1 145 0 40 176 0 85 14 0 404 663 4 0 6 chain 12496 chr12 133851895 + 12749272 12749418 LTR10F 562 - 372 518 150262 146 chain 28815 chr12 133851895 + 12749706 12750073 L1PA5 6144 + 5774 6141 89823 215 1 8 9 13 6 129 chain 23834 chr12 133851895 + 12762267 12762552 AluY 311 + 11 298 111287 120 0 2 165 chain 123013 chr12 133851895 + 12770602 12772018 SVA_B 1603 - 0 1603 30044 432 0 2 82 0 201 649 9 0 195 6 0 12 7 9 16 3 0 5 chain 29350 chr12 133851895 + 12785002 12785310 AluYa5 310 - 2 310 87298 308 chain 76163 chr12 133851895 + 12792597 12793688 MER11A 1151 - 0 1151 45388 163 6 7 59 0 1 36 18 0 23 42 0 13 0 26 133 5 6 84 2 1 60 0 1 94 8 9 108 0 2 31 4 0 56 0 2 6 1 0 52 8 0 24 0 99 55 chain 17402 chr12 133851895 + 12800146 12800502 MSTA 426 - 37 426 134498 45 5 1 27 0 20 31 94 105 10 0 7 10 2 0 70 1 0 36 0 1 7 0 1 18 chain 12788 chr12 133851895 + 12803788 12803946 MER41A 554 + 265 424 149103 131 1 2 26 chain 19360 chr12 133851895 + 12804476 12804812 MER51B 395 - 7 395 129047 79 3 15 49 1 0 10 28 27 14 12 29 59 0 6 32 9 28 40 chain 3115 chr12 133851895 + 12822635 12822670 MER63A 208 + 172 207 222663 35 chain 7126 chr12 133851895 + 12823107 12823245 MER53 195 + 24 195 176572 81 18 61 15 10 0 14 chain 22162 chr12 133851895 + 12826892 12827165 AluSz6 309 + 29 304 119536 237 0 2 36 chain 4463 chr12 133851895 + 12864281 12864336 MLT1J1 437 - 144 199 201199 55 chain 3118 chr12 133851895 + 12902465 12902502 MER51A 677 + 364 401 222588 37 chain 4920 chr12 133851895 + 12908891 12908978 MLT2C2 476 + 387 476 196057 20 4 0 9 9 15 45 chain 3688 chr12 133851895 + 12916695 12916767 MER2 342 - 127 201 212120 37 18 20 17 chain 6015 chr12 133851895 + 12920617 12920689 MER2 342 + 141 213 185086 72 chain 46815 chr12 133851895 + 12963222 12963779 LTR14 556 - 0 556 61358 91 1 0 465 chain 20033 chr12 133851895 + 12975753 12976083 THE1D 372 - 4 372 127036 144 21 55 6 0 1 30 34 37 95 chain 23776 chr12 133851895 + 12984953 12985239 AluY 311 + 0 292 111613 69 1 4 37 0 2 20 0 1 159 chain 20030 chr12 133851895 + 12986592 12986953 THE1B 368 + 0 368 127043 47 7 8 46 15 16 59 0 2 6 62 66 58 1 0 60 chain 11583 chr12 133851895 + 13004689 13004826 THE1B 368 - 231 368 153961 137 chain 27758 chr12 133851895 + 13006464 13006849 Tigger3b 1229 + 804 1203 93840 66 1 9 241 19 25 58 chain 9277 chr12 133851895 + 13016588 13016732 MSTA 426 - 245 410 164173 33 21 42 90 chain 28841 chr12 133851895 + 13017648 13017950 AluYa8 305 + 0 302 89716 302 chain 18324 chr12 133851895 + 13018794 13019015 AluSc 308 + 45 266 132004 221 chain 24988 chr12 133851895 + 13053549 13053855 AluSp 311 + 0 311 104866 57 0 7 204 3 2 34 1 0 7 chain 19480 chr12 133851895 + 13080611 13080874 MER50 708 + 350 609 128715 47 2 0 97 9 6 24 0 1 84 chain 3015 chr12 133851895 + 13128569 13128603 MIRb 242 + 95 129 224726 34 chain 4967 chr12 133851895 + 13141361 13141422 MER41A 554 - 93 154 195519 61 chain 13083 chr12 133851895 + 13160276 13160530 MER4D 903 + 14 278 147910 36 20 19 41 12 10 63 16 23 32 8 14 26 chain 10599 chr12 133851895 + 13163455 13163601 L1MA6 2487 - 677 829 157830 80 4 9 39 0 1 23 chain 8667 chr12 133851895 + 13199085 13199175 5S 121 + 0 90 167383 90 chain 23765 chr12 133851895 + 13199384 13199681 AluSp 311 - 15 300 111679 7 13 0 231 0 1 46 chain 81758 chr12 133851895 + 13206299 13207350 MER11A 1151 - 0 1151 42867 66 1 0 90 0 1 101 1 59 19 0 1 67 0 4 38 1 2 12 6 9 29 1 0 108 0 13 204 0 2 21 0 11 66 1 0 60 0 1 73 7 15 79 chain 104947 chr12 133851895 + 13230206 13231352 L1PA3long 6157 - 0 1148 35514 155 1 0 456 0 3 534 chain 86939 chr12 133851895 + 13231366 13232314 L1PA3long 6157 + 4038 4986 40808 948 chain 48240 chr12 133851895 + 13236479 13237038 L1PA5 6144 - 0 568 60281 11 0 7 100 0 1 52 0 1 396 chain 7030 chr12 133851895 + 13258083 13258167 L1PA5 6144 + 6060 6144 177253 84 chain 6747 chr12 133851895 + 13261842 13261933 L1PA17 2846 - 1229 1312 179343 23 8 0 60 chain 5262 chr12 133851895 + 13280296 13280361 L1MC1 2226 - 885 950 192391 65 chain 79018 chr12 133851895 + 13333088 13334141 MER11C 1089 - 20 1089 44053 4 0 1 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 112 48 47 145 1 0 65 0 4 62 0 9 246 chain 23926 chr12 133851895 + 13345323 13345608 AluSp 311 + 17 302 110770 285 chain 19716 chr12 133851895 + 13372243 13372492 THE1D-int 1627 - 1376 1627 128050 234 0 2 15 chain 34847 chr12 133851895 + 13402615 13403064 L1PA8 5853 - 0 439 76411 93 1 0 16 1 0 49 5 0 6 10 10 70 2 0 45 1 0 150 chain 4618 chr12 133851895 + 13403064 13403131 MER72B 755 + 679 747 199427 12 3 4 52 chain 21387 chr12 133851895 + 13407261 13407759 MER57B2 428 - 5 428 122561 17 0 5 82 8 32 17 9 13 10 0 1 83 14 38 28 6 0 30 137 10 57 chain 18170 chr12 133851895 + 13412572 13412962 LTR7 482 - 0 482 132406 49 12 14 52 3 12 29 25 35 13 1 32 18 3 4 39 2 53 18 14 13 15 29 17 29 0 1 39 chain 307250 chr12 133851895 + 13414217 13418051 HERVH-int 3825 - 0 3825 13120 225 0 2 582 1 0 43 165 0 329 5 0 737 1 4 187 4 31 745 0 1 142 5 10 7 2 0 51 1 0 5 1 2 25 1 0 41 18 17 8 3 0 14 0 13 24 1 119 461 chain 27551 chr12 133851895 + 13418053 13418453 LTR7 482 - 0 482 94500 49 12 14 95 0 10 50 8 40 109 9 47 68 chain 21589 chr12 133851895 + 13420777 13421112 MSTA 426 - 18 395 121809 91 1 21 60 2 0 88 24 48 27 1 0 5 1 2 35 chain 3534 chr12 133851895 + 13440666 13440704 5S 121 - 74 112 214801 38 chain 82503 chr12 133851895 + 13453651 13454826 L1PB1 5432 + 4265 5423 42538 203 0 10 148 2 0 71 0 1 5 0 2 273 0 1 22 4 5 96 0 1 11 3 0 5 5 9 10 1 0 9 1 0 10 19 13 50 2 1 14 2 1 43 1 0 17 3 0 6 1 0 9 9 0 16 7 4 15 2 0 24 1 0 21 1 0 13 1 0 19 chain 76014 chr12 133851895 + 13477424 13478286 L1PA5 6144 - 15 876 45471 835 1 0 26 chain 8529 chr12 133851895 + 13507080 13507172 L1PA3long 6157 - 1 93 168142 92 chain 3708 chr12 133851895 + 13525262 13525365 L1MA3 4352 - 20 117 211824 4 1 0 15 7 6 16 6 5 4 1 0 24 5 3 20 chain 20039 chr12 133851895 + 13542466 13542732 MER1A 529 + 255 523 127010 198 10 12 58 chain 550161 chr12 133851895 + 13544540 13550566 L1PA3long 6157 - 1 6156 1427 1121 1 0 4129 1 129 521 0 1 102 0 1 151 chain 93849 chr12 133851895 + 13550568 13551590 L1PA2 6032 + 5010 6032 38397 1022 chain 82279 chr12 133851895 + 13552413 13553344 L1P1 4361 - 20 948 42643 12 2 1 23 1 0 155 1 0 737 chain 20545 chr12 133851895 + 13585752 13585998 L1PA7 6471 - 7 250 125489 5 3 0 238 chain 6348 chr12 133851895 + 13593843 13593928 5S 121 - 30 114 182391 25 5 4 55 chain 9926 chr12 133851895 + 13605683 13605804 THE1C 375 - 254 375 160945 121 chain 22256 chr12 133851895 + 13606794 13607155 THE1B 368 + 0 368 119097 111 0 3 5 2 0 55 61 66 70 1 2 56 chain 5305 chr12 133851895 + 13612648 13612710 U6 107 - 45 107 191963 62 chain 56148 chr12 133851895 + 13647187 13648006 L1MA1 4479 - 289 1072 55039 18 26 15 5 0 1 9 1 0 35 2 0 29 1 0 121 8 5 88 6 5 14 2 0 19 8 7 64 1 0 18 11 0 23 1 0 196 2 0 111 chain 2873 chr12 133851895 + 13661071 13661137 MIR 256 + 79 143 227473 13 0 1 11 1 0 4 16 14 21 chain 21498 chr12 133851895 + 13669476 13669836 THE1D 372 + 2 357 122153 67 51 33 64 13 27 147 1 0 17 chain 188600 chr12 133851895 + 13671401 13673999 L1PA11 4918 - 340 2951 20183 11 2 0 13 1 0 15 41 31 20 3 2 12 2 0 39 3 0 6 0 3 24 17 14 18 4 11 22 0 6 6 13 4 591 1 0 293 0 1 238 0 6 479 9 8 204 0 3 135 0 4 30 9 5 65 0 4 8 1 0 7 1 0 160 1 19 94 chain 5915 chr12 133851895 + 13740813 13740912 MADE1 96 - 3 94 186044 43 21 13 35 chain 41332 chr12 133851895 + 13743169 13743715 L1PA8 5853 - 0 530 67493 90 5 4 18 2 1 58 4 3 69 2 0 29 11 0 17 1 0 42 0 1 198 chain 134226 chr12 133851895 + 13746014 13747616 L1PA7 6471 + 4843 6470 27163 140 0 2 211 1 0 234 0 15 92 0 1 54 7 11 15 1 3 835 0 2 12 chain 45463 chr12 133851895 + 13750133 13750729 MER51C 639 + 0 611 62534 21 6 21 163 6 7 63 1 0 336 chain 193554 chr12 133851895 + 13863140 13865315 L1PA4 6152 + 3966 6143 19729 488 0 3 172 1 0 884 0 1 378 2 1 250 chain 14079 chr12 133851895 + 13876077 13876233 L1PA7 6471 - 3 159 144294 156 chain 9761 chr12 133851895 + 13879622 13879869 L1PB1 5432 - 10 236 161789 18 1 0 11 2 1 22 1 0 24 25 20 18 31 19 9 1 0 44 18 18 22 chain 6883 chr12 133851895 + 13923616 13923692 L1PA8A 6298 - 121 197 178328 76 chain 45528 chr12 133851895 + 13948480 13949023 L1PA6 6164 + 5618 6162 62479 68 0 1 475 chain 20262 chr12 133851895 + 13961452 13961686 L1PA5 6144 + 5908 6142 126337 234 chain 6284 chr12 133851895 + 13961988 13962069 MER20 218 - 43 124 182927 81 chain 4019 chr12 133851895 + 14022375 14022422 MADE2 80 + 0 47 207085 47 chain 22610 chr12 133851895 + 14028188 14028463 AluSc 308 + 11 283 117539 13 3 0 259 chain 3744 chr12 133851895 + 14049816 14049895 MIRb 242 + 116 194 211258 16 3 0 8 17 19 35 chain 5180 chr12 133851895 + 14050870 14050934 L1PA3long 6157 + 6093 6156 193225 59 1 0 4 chain 4153 chr12 133851895 + 14104005 14104081 MER53 195 - 6 82 205204 42 2 0 6 10 12 16 chain 9657 chr12 133851895 + 14138820 14138953 LTR1 825 - 680 813 162315 74 2 3 4 1 0 52 chain 16911 chr12 133851895 + 14150124 14150401 Tigger3a 397 + 0 304 135823 37 32 0 35 14 68 36 0 4 114 0 1 9 chain 28560 chr12 133851895 + 14151190 14151561 THE1D 372 + 0 372 90921 162 0 1 27 0 4 8 6 2 168 chain 378765 chr12 133851895 + 14154961 14160491 L1PB1 5432 - 12 5413 10798 16 1 0 13 1 0 21 1 0 23 18 15 5 2 0 19 16 6 6 3 0 16 1 0 43 1 0 16 0 2 50 2 0 11 4 0 12 4 3 5 1 0 24 1 0 11 299 0 276 24 30 169 3 0 52 1 0 30 5 4 44 13 18 22 17 3 4 0 1 374 1 2 47 0 1 4 64 1 54 7 5 45 0 23 24 3 2 16 6 0 6 1 7 101 18 10 84 2 0 5 0 2 33 0 267 61 0 1 345 5 4 270 13 7 62 0 2 35 15 7 42 4 1 6 2 0 12 0 1 98 4 8 162 0 4 252 9 12 542 5 0 6 8 6 630 1 0 65 0 1 150 0 1 143 1 0 345 9 10 27 chain 536357 chr12 133851895 + 14188412 14194850 L1PA7 6471 + 0 6459 3397 57 0 1 138 11 10 187 3 0 9 0 4 387 0 1 99 4 0 8 0 4 299 3 0 9 0 4 129 1 0 17 0 1 21 0 3 213 0 3 244 2 1 178 5 2 490 0 2 138 0 1 21 0 2 417 0 4 635 7 2 744 0 1 35 2 4 1089 0 3 180 0 5 144 0 1 512 chain 3946 chr12 133851895 + 14221708 14222162 MLT1F 544 + 7 542 208179 27 7 8 18 371 451 31 chain 474552 chr12 133851895 + 14232905 14238495 L1PA6 6164 + 0 6160 7895 88 0 511 190 17 0 9 1 18 15 0 1 107 0 25 879 0 23 347 0 2 107 3 4 608 0 1 87 2 1 99 0 1 66 0 1 506 0 2 460 9 10 511 0 1 635 1 0 390 0 2 453 chain 158971 chr12 133851895 + 14242947 14244746 L1PA5 6144 - 1 1801 23468 1485 0 1 314 chain 33909 chr12 133851895 + 14249705 14250233 L1PA17 2846 - 153 662 77761 19 1 3 21 1 0 18 1 0 32 1 0 8 2 0 57 1 0 14 7 5 17 12 8 122 20 11 174 chain 29698 chr12 133851895 + 14258621 14258939 AluYb8 318 + 0 316 85841 123 2 0 193 chain 12297 chr12 133851895 + 14263219 14263382 L1PB 1623 + 447 609 151021 40 1 0 122 chain 21334 chr12 133851895 + 14266400 14266686 L1PA6 6164 + 3750 4019 122739 17 4 5 186 18 0 61 chain 56866 chr12 133851895 + 14266686 14267343 L1PA6 6164 + 4020 4677 54624 657 chain 52374 chr12 133851895 + 14267354 14267997 L1PA6 6164 + 4690 5312 57378 81 22 0 510 0 1 30 chain 73215 chr12 133851895 + 14267997 14268839 L1PA6 6164 + 5316 6162 46918 502 0 3 65 0 1 275 chain 7541 chr12 133851895 + 14270184 14270403 L1MDa 1598 + 261 485 173924 24 1 2 17 61 60 40 16 3 8 5 0 9 0 23 38 chain 15357 chr12 133851895 + 14278827 14279016 7SLRNA 320 + 24 213 140323 189 chain 17389 chr12 133851895 + 14296818 14297176 THE1B 368 - 0 368 134543 118 34 36 33 13 12 51 1 0 4 57 67 47 chain 108159 chr12 133851895 + 14297176 14298698 THE1B-int 1605 - 0 1588 34669 12 1 0 252 0 1 578 1 10 23 20 21 202 35 35 16 14 30 141 0 1 18 15 30 82 3 4 10 4 1 11 9 35 75 chain 29980 chr12 133851895 + 14307972 14308370 L1PA16 3655 + 2681 3089 84874 70 0 4 148 1 0 15 1 0 23 0 4 37 1 4 93 0 1 9 chain 2943 chr12 133851895 + 14311181 14311213 MLT1A1 405 + 296 328 226267 32 chain 22326 chr12 133851895 + 14315881 14316165 AluY 311 + 9 300 118794 80 0 4 36 1 2 149 0 2 18 chain 48287 chr12 133851895 + 14329568 14330108 L1PA4 6152 + 5612 6151 60254 286 1 0 253 chain 77945 chr12 133851895 + 14333252 14334166 L1PA7 6471 + 4678 5597 44550 789 1 6 124 chain 71599 chr12 133851895 + 14334170 14335033 L1PA7 6471 + 5597 6459 47658 24 1 0 509 1 0 259 0 1 69 chain 30735 chr12 133851895 + 14335048 14335372 L1HS 6032 + 5708 6032 82974 324 chain 45855 chr12 133851895 + 14342861 14343463 L1PA15 4387 + 3280 3890 62174 447 0 4 27 0 1 45 10 8 10 8 13 55 chain 19358 chr12 133851895 + 14351132 14351382 L1PA8A 6298 - 7 256 129053 93 0 7 12 7 0 50 1 0 87 chain 27704 chr12 133851895 + 14353276 14353653 THE1C 375 + 0 375 94028 87 0 1 79 0 1 11 0 2 5 17 12 152 1 0 25 chain 14236 chr12 133851895 + 14359364 14359540 THE1B 368 - 0 175 143778 74 1 0 101 chain 6307 chr12 133851895 + 14361644 14361722 MLT1A0 366 - 30 109 182738 59 0 1 19 chain 22002 chr12 133851895 + 14365688 14366000 L1PA8 5853 + 5529 5853 120219 35 1 0 46 2 0 68 2 1 14 1 0 6 0 1 40 2 1 19 1 0 29 0 18 46 chain 4047 chr12 133851895 + 14383990 14384337 L1M2 1805 - 988 1319 206673 13 24 12 24 191 186 17 1 0 5 38 40 34 chain 24863 chr12 133851895 + 14421146 14421529 MER4A1 472 + 0 346 105558 27 4 3 193 51 14 98 0 1 10 chain 6102 chr12 133851895 + 14423100 14423322 MER89 557 - 274 495 184390 63 1 0 4 126 126 28 chain 21246 chr12 133851895 + 14432754 14433108 THE1C 375 - 0 375 123034 25 1 0 101 0 1 6 1 0 29 1 2 12 3 0 17 0 3 26 28 48 31 10 11 63 chain 26760 chr12 133851895 + 14445844 14446218 MLT2A1 477 - 93 477 97126 21 9 8 82 1 8 55 2 0 26 15 16 25 0 1 121 0 4 17 chain 393608 chr12 133851895 + 14446219 14452713 HERVL-int 5654 - 1 5654 10334 56 0 5 6 0 3 152 0 1 204 0 1 282 316 0 40 1 4 123 6 3 889 0 7 430 20 3 85 4 0 126 4 13 569 1 2 136 0 1 242 0 1 121 11 3 57 8 9 160 0 1 166 0 1 6 2 1 47 8 10 180 7 14 383 0 55 58 1238 647 350 chain 111384 chr12 133851895 + 14453179 14454895 L1PREC2 3366 + 1355 2994 33840 22 15 16 24 10 10 242 0 1 85 44 0 69 1 2 138 3 4 386 1 0 4 0 1 70 0 1 12 1 0 306 5 4 27 1 0 27 1 0 44 1 0 4 3 0 10 81 67 16 0 1 4 3 0 10 22 8 24 chain 3466 chr12 133851895 + 14458530 14458567 LTR50 688 + 476 513 215871 37 chain 5608 chr12 133851895 + 14458837 14458918 L1MB2 1706 + 1611 1693 188999 22 5 6 54 chain 123532 chr12 133851895 + 14472845 14474462 LTR12C 1709 + 0 1708 29868 203 2 1 63 0 1 32 0 1 398 0 159 254 1 0 4 4 2 97 8 13 63 26 25 159 102 0 106 0 33 13 1 0 81 chain 8451 chr12 133851895 + 14477776 14477888 L1MA5 2750 - 151 260 168558 26 2 0 9 1 0 74 chain 23580 chr12 133851895 + 14483293 14483578 AluY 311 + 10 296 112685 115 1 2 169 chain 32531 chr12 133851895 + 14484109 14484530 MLT2A1 477 + 0 423 79973 142 0 1 12 0 1 13 1 5 211 4 0 38 chain 443490 chr12 133851895 + 14484708 14490972 HERVL-int 5654 + 0 5646 8938 18 1 0 208 0 5 390 2 3 111 24 0 9 0 24 131 0 2 70 9 10 19 309 0 29 5 15 74 1 0 577 0 2 8 0 1 206 2 3 21 4 6 162 0 1 31 0 1 189 4 5 495 5 6 389 0 1 56 341 0 636 0 4 131 0 5 180 1 0 539 6 3 213 0 2 169 0 1 122 0 3 118 0 1 44 10 2 195 chain 3484 chr12 133851895 + 14491578 14491629 MLT2A1 477 + 427 475 215616 11 2 0 19 1 0 18 chain 5626 chr12 133851895 + 14500000 14500060 AluSp 311 + 228 288 188811 60 chain 53134 chr12 133851895 + 14504021 14504742 THE1C-int 1605 - 0 733 56937 77 7 1 15 6 9 56 10 25 88 1 2 115 21 19 44 3 4 278 chain 132989 chr12 133851895 + 14506990 14508474 SVA_C 1631 + 16 1631 27424 4 0 1 774 0 40 29 5 95 44 0 1 33 1 0 594 chain 21571 chr12 133851895 + 14509479 14509752 AluSp 311 - 26 300 121877 164 9 10 100 chain 25871 chr12 133851895 + 14542553 14542849 AluSp 311 - 4 303 100562 213 0 3 83 chain 2987 chr12 133851895 + 14563051 14563101 L1MB8 1703 - 123 167 225302 16 7 1 27 chain 4016 chr12 133851895 + 14563700 14563750 MER44D 709 + 608 660 207138 39 0 2 11 chain 11271 chr12 133851895 + 14564343 14564487 L1PA7 6471 + 6332 6469 155156 129 7 0 8 chain 4186 chr12 133851895 + 14576257 14576310 L1MB8 1703 - 819 872 204750 53 chain 409205 chr12 133851895 + 14635696 14641083 HERVL-int 5654 - 0 5654 9826 219 0 1 11 0 5 13 0 1 182 1 2 30 36 46 153 0 2 86 4 7 193 2 0 107 7 19 314 7 5 301 16 123 233 6 8 53 1 2 222 1 0 120 2 3 290 0 14 21 0 1 35 0 1 290 0 1 289 0 5 524 0 2 26 1 0 6 0 1 441 5 6 25 0 1 90 3 0 83 1 3 87 11 12 114 0 3 5 3 0 151 0 105 38 43 42 58 2 0 402 7 5 16 chain 418320 chr12 133851895 + 14641593 14647182 HERVL-int 5654 - 9 5654 9579 210 0 1 13 12 17 414 0 2 85 4 7 442 0 12 179 10 8 419 0 2 86 1 0 4 0 1 114 2 1 26 0 1 48 7 8 6 0 1 18 0 1 136 10 18 47 3 2 120 2 3 361 5 6 23 108 109 153 0 1 243 4 7 39 0 5 513 7 9 54 6 11 413 5 6 25 0 1 173 1 3 87 11 12 915 9 8 16 chain 26802 chr12 133851895 + 14647889 14648239 MLT2A1 477 - 127 477 96979 39 0 1 94 11 5 39 0 4 27 0 1 140 chain 8768 chr12 133851895 + 14676733 14677031 L1MA6 2487 + 2175 2402 166824 48 25 9 34 12 10 15 1 0 6 90 42 40 6 3 16 1 0 4 chain 4779 chr12 133851895 + 14690228 14690332 MER20 218 - 6 115 197583 35 34 39 35 chain 19437 chr12 133851895 + 14706665 14706904 7SK 245 - 6 245 128851 239 chain 21995 chr12 133851895 + 14714492 14714778 AluSp 311 - 16 300 120253 150 9 7 127 chain 24801 chr12 133851895 + 14747468 14748019 L1PREC2 3366 - 318 809 105890 38 81 63 25 3 1 12 96 59 41 11 10 47 2 0 195 chain 50097 chr12 133851895 + 14781996 14782603 PABL_A 660 + 25 660 58946 59 0 9 103 3 0 323 0 22 119 chain 102563 chr12 133851895 + 14784167 14785296 L1PA3long 6157 - 0 1134 36117 223 0 1 614 5 9 287 chain 4510 chr12 133851895 + 14833623 14833700 L1PB1 5432 - 10 83 200669 5 1 0 13 1 0 12 1 0 22 5 4 17 chain 22821 chr12 133851895 + 14835109 14835485 THE1D 372 + 0 360 116491 47 18 0 27 3 0 6 9 13 73 32 34 24 1 0 136 chain 78199 chr12 133851895 + 14850015 14850945 L1PA7 6471 - 18 949 44420 321 0 1 338 1 0 93 14 16 63 1 0 99 chain 44572 chr12 133851895 + 14858354 14858836 LTR7 482 - 0 482 63506 482 chain 259928 chr12 133851895 + 14859996 14863090 HERVH-int 3825 - 705 3825 15707 25 0 3 73 0 2 1216 3 7 4 1 0 10 0 1 63 4 31 243 0 1 218 15 0 444 2 1 14 0 2 5 3 4 54 2 1 42 12 11 14 3 0 9 6 18 24 1 0 10 1 0 10 0 3 25 5 0 157 1 0 375 chain 44421 chr12 133851895 + 14863092 14863574 LTR7 482 - 0 482 63670 482 chain 17563 chr12 133851895 + 14865913 14866237 MER51B 395 + 11 388 134090 29 7 26 32 50 0 17 6 79 51 1 0 50 0 12 81 chain 55982 chr12 133851895 + 14868170 14869219 LTR30 714 - 0 714 55132 81 2 0 46 333 0 41 13 12 35 1 0 195 4 0 83 0 10 48 1 0 104 3 0 59 chain 24785 chr12 133851895 + 14868319 14868613 AluY 311 + 11 303 105966 21 1 0 48 2 0 52 0 1 170 chain 6729 chr12 133851895 + 14873419 14873504 L1PA16 3655 - 63 145 179483 14 3 0 68 chain 29179 chr12 133851895 + 14874686 14874995 AluYa5 310 - 1 310 88152 309 chain 6208 chr12 133851895 + 14889943 14890013 L1PA8 5853 - 0 70 183517 70 chain 36158 chr12 133851895 + 14892424 14892925 MER84 505 + 0 499 74700 20 3 0 429 27 28 22 chain 43088 chr12 133851895 + 14896158 14896702 LTR19B 566 - 0 558 65306 15 0 4 94 4 5 16 4 0 59 0 2 95 0 2 86 0 9 171 chain 90675 chr12 133851895 + 14898600 14899656 MER11C 1089 - 26 1089 39397 325 0 1 45 0 4 201 3 0 167 1 5 64 0 1 250 chain 49740 chr12 133851895 + 14918742 14919323 LTR10C 591 + 3 591 59200 5 0 2 151 0 3 346 0 2 79 chain 2632 chr12 133851895 + 14944620 14944662 L1PB2 3958 + 3750 3791 231254 24 4 3 14 chain 87677 chr12 133851895 + 14970316 14971371 L1PA8A 6298 - 8 1075 40500 713 1 0 4 7 6 70 0 14 260 chain 259597 chr12 133851895 + 15009952 15013944 L1PA11 4918 - 351 4043 15726 13 1 0 34 3 0 3 2 0 9 5 1 18 2 1 16 2 0 64 6 5 8 1 0 55 0 1 14 8 11 65 0 1 36 0 43 136 0 2 293 10 1 8 1 0 25 1 2 11 2 1 30 1 0 118 2 0 5 0 2 7 4 8 322 2 3 128 8 7 117 5 3 180 3 10 17 7 8 12 0 4 24 6 0 257 0 1 58 1 4 77 8 7 121 7 0 82 0 2 122 1 0 140 4 1 397 3 0 6 0 1 5 343 12 192 0 1 20 0 6 25 8 6 73 1 3 191 chain 518121 chr12 133851895 + 15013979 15020414 L1PA6 6164 - 2 6164 5366 8 3 0 85 3 0 76 2 0 6 9 11 107 7 3 33 311 0 469 1 0 826 0 11 158 0 4 668 0 1 196 0 11 1088 0 4 64 1 3 472 0 1 267 0 3 135 0 1 932 0 13 39 2 0 467 chain 41928 chr12 133851895 + 15077619 15078161 MER41A 554 + 0 545 66723 57 0 1 283 7 9 195 chain 12968 chr12 133851895 + 15082906 15083114 L1PA8 5853 + 5648 5853 148360 31 1 0 14 1 0 47 2 1 19 1 0 33 11 12 48 chain 74345 chr12 133851895 + 15142822 15143942 L1PA14 3548 + 2400 3485 46337 136 1 0 147 3 0 255 3 1 14 2 0 47 2 0 5 2 0 26 6 7 76 8 4 13 2 0 6 1 0 84 1 0 76 1 3 4 1 0 28 1 0 11 5 1 12 28 26 11 5 3 19 2 1 39 6 0 10 1 0 20 chain 11213 chr12 133851895 + 15168713 15168855 L1MB2 1706 + 1422 1574 155376 94 0 10 48 chain 24385 chr12 133851895 + 15213343 15213619 AluSc5 308 - 23 299 108167 276 chain 117306 chr12 133851895 + 15223625 15225006 L1PA7 6471 + 5075 6461 32024 27 0 1 496 0 4 18 1 0 77 0 2 741 1 0 20 chain 51836 chr12 133851895 + 15229429 15230016 L1PA4 6152 + 5553 6141 57729 344 0 1 243 chain 11902 chr12 133851895 + 15248032 15248601 LTR17 781 - 0 593 52498 31 0 22 190 0 1 210 0 1 138 chain 136514 chr12 133851895 + 15248620 15250212 L1PA5 6144 - 3 1594 26742 132 3 10 9 8 0 178 0 1 513 1 0 748 chain 47267 chr12 133851895 + 15250212 15250732 L1PA5 6144 + 3992 4512 60929 520 chain 3932 chr12 133851895 + 15250743 15250931 LTR17 781 - 593 781 52498 188 chain 6909 chr12 133851895 + 15308860 15308936 L1PA2 6032 + 5950 6026 178124 76 chain 7887 chr12 133851895 + 15319787 15319871 L1PA2 6032 - 3 87 171750 84 chain 12589 chr12 133851895 + 15343146 15343329 MER30 238 - 0 201 149886 95 18 36 70 chain 30151 chr12 133851895 + 15364976 15365292 AluYb8 318 - 2 318 84329 316 chain 69301 chr12 133851895 + 15378908 15379694 L1PA2 6032 + 5272 6030 48681 37 28 0 721 chain 44587 chr12 133851895 + 15388056 15388913 L1PB1 5432 - 19 829 63494 9 1 0 13 1 0 21 1 0 24 7 5 9 1 0 4 3 1 16 9 0 14 4 1 16 1 0 8 45 53 51 29 22 8 1 0 24 2 3 8 3 0 20 1 4 26 16 16 98 20 11 4 1 0 292 15 0 5 2 0 24 chain 11539 chr12 133851895 + 15405637 15405793 L1MA4 2864 + 2539 2692 154148 126 9 6 21 chain 66295 chr12 133851895 + 15435820 15436532 L1PA2 6032 - 3 714 49956 677 1 0 34 chain 45121 chr12 133851895 + 15436532 15437020 L1PA2 6032 + 4816 5304 62908 488 chain 19060 chr12 133851895 + 15457068 15457281 L1PA5 6144 + 5770 5983 129940 213 chain 9975 chr12 133851895 + 15465497 15465719 L1M1 2793 - 98 320 160698 10 1 0 7 8 7 32 1 0 11 4 6 59 46 47 43 chain 38443 chr12 133851895 + 15498220 15498682 L1PA7 6471 + 5988 6461 71523 333 1 12 128 chain 25305 chr12 133851895 + 15501410 15501734 AluYf4 310 + 0 295 103200 106 28 0 26 1 0 163 chain 80520 chr12 133851895 + 15510434 15511330 L1PA3long 6157 + 5261 6157 43380 651 1 0 8 0 4 220 3 0 13 chain 3932 chr12 133851895 + 15570502 15570552 MER5A1 166 + 80 129 208384 36 1 0 13 chain 9106 chr12 133851895 + 15586679 15586831 L1PA13 3608 - 126 270 165044 32 10 6 48 2 0 10 7 6 24 1 0 18 chain 30013 chr12 133851895 + 15588926 15589261 L1P1 4361 + 2847 3182 84761 335 chain 152657 chr12 133851895 + 15603733 15605679 L1PBa 3878 + 1486 3424 24271 119 0 5 7 1 0 293 2 3 72 11 1 465 5 7 5 1 0 244 8 9 315 4 3 21 0 2 161 5 0 52 1 0 154 chain 30373 chr12 133851895 + 15629311 15629636 L1PA2 6032 - 814 1139 83731 325 chain 74655 chr12 133851895 + 15629636 15630445 L1PA2 6032 + 5220 6029 46183 809 chain 23498 chr12 133851895 + 15671958 15672300 THE1B 368 - 11 368 113137 64 7 6 78 8 11 26 10 8 109 0 15 40 chain 12596 chr12 133851895 + 15675197 15675368 L1PA8 5853 - 0 170 149858 39 0 1 52 2 1 19 2 1 45 0 1 6 1 0 5 chain 11014 chr12 133851895 + 15694359 15694660 MLT1B 390 - 0 306 156145 101 109 113 28 32 33 31 chain 31903 chr12 133851895 + 15707382 15707779 MLT2A1 477 - 78 477 81005 9 2 0 67 1 0 150 1 5 29 0 1 138 chain 6512 chr12 133851895 + 15728394 15728489 MLT1A 405 + 298 394 181143 57 8 9 30 chain 40582 chr12 133851895 + 15734780 15735270 MER9a3 513 - 0 513 68466 78 0 1 160 0 18 76 0 1 68 0 1 90 0 2 18 chain 3698 chr12 133851895 + 15736088 15736130 MER58B 340 + 64 106 211964 42 chain 21564 chr12 133851895 + 15764728 15765035 L1PA16 3655 - 410 731 121910 44 1 6 85 13 19 36 0 3 128 chain 14826 chr12 133851895 + 15767811 15768055 L1P4 1494 + 428 710 141853 79 39 73 61 1 5 64 chain 21966 chr12 133851895 + 15797016 15797302 MER57A1 433 + 71 368 120376 23 1 2 108 0 9 76 0 1 78 chain 24933 chr12 133851895 + 15846616 15846994 L1PA8 5853 + 5485 5853 105144 6 1 0 73 1 0 44 2 0 60 32 28 48 1 0 16 1 0 93 chain 12286 chr12 133851895 + 15875031 15875233 MER30 238 - 0 238 151053 32 10 7 32 0 6 23 2 0 11 12 29 65 0 18 15 chain 23087 chr12 133851895 + 15886035 15886426 THE1D 372 - 0 372 115210 32 1 0 58 24 9 50 23 30 30 1 0 100 16 7 56 chain 63516 chr12 133851895 + 15894666 15895385 L1PA5 6144 - 18 736 51185 142 1 0 576 chain 153132 chr12 133851895 + 15895385 15897121 L1PA5 6144 + 3671 5409 24212 313 0 3 31 3 0 690 0 1 266 0 1 433 chain 3011 chr12 133851895 + 15911482 15911517 MER3 215 - 131 166 224786 35 chain 218142 chr12 133851895 + 15912481 15915561 L1MA2 4263 + 1001 4101 17994 335 7 11 55 0 1 4 1 0 49 5 6 30 5 9 43 10 13 235 2 1 90 1 0 9 0 1 4 1 0 43 7 11 26 18 19 23 1 0 4 0 1 309 1 0 50 0 3 5 14 17 124 3 2 22 0 4 221 0 1 126 1 2 545 0 4 37 2 0 88 6 2 76 1 0 147 5 2 147 9 7 93 16 18 5 0 1 19 chain 4095 chr12 133851895 + 15961312 15961364 MIR 256 - 108 161 206001 31 0 1 21 chain 96207 chr12 133851895 + 16027380 16028725 LTR12C 1709 + 0 1709 37765 256 38 40 37 1 45 86 14 9 52 22 23 12 17 20 24 1 3 151 0 37 35 0 288 97 20 13 399 1 0 82 chain 74868 chr12 133851895 + 16030424 16031562 L1PB1 5432 + 3174 5404 46077 134 5 1119 77 1 2 115 0 1 78 0 4 333 12 19 47 1 2 9 5 0 25 24 19 11 2 0 51 2 1 16 1 0 44 1 0 15 25 12 6 1 0 12 9 6 14 2 0 24 1 0 21 1 0 13 chain 33544 chr12 133851895 + 16064951 16065315 SVA_E 1901 - 0 362 78325 353 2 0 9 chain 29023 chr12 133851895 + 16075951 16076255 AluYa5 310 - 6 310 88890 304 chain 532247 chr12 133851895 + 16096671 16102771 L1PA5 6144 - 7 6141 3935 1789 0 4 250 4 0 208 0 3 594 1 4 526 0 19 432 1 0 393 0 4 23 1 3 471 1 6 179 3 1 22 4 5 1198 chain 45789 chr12 133851895 + 16103004 16103557 MER41A 554 - 0 554 62242 80 0 2 99 1 0 373 chain 7085 chr12 133851895 + 16154098 16154179 L1PA8A 6298 + 6205 6286 176860 81 chain 29026 chr12 133851895 + 16176407 16176710 AluYa5 310 - 7 310 88876 303 chain 13540 chr12 133851895 + 16208133 16208400 L1MA4 2864 + 2043 2304 146209 25 7 4 46 1 0 7 1 0 72 1 0 11 27 26 15 1 6 8 4 0 41 chain 16281 chr12 133851895 + 16208410 16208615 AluSp 311 + 105 309 137528 27 1 0 177 chain 122565 chr12 133851895 + 16210133 16211556 LTR12C 1709 + 0 1709 30203 331 0 8 311 0 278 184 1 0 8 2 0 18 2 1 85 0 4 481 chain 114754 chr12 133851895 + 16244215 16245725 THE1C-int 1605 - 9 1587 32859 20 4 3 36 1 0 265 0 3 254 2 1 265 6 0 70 0 1 7 1 0 43 0 9 103 0 1 43 0 3 17 5 12 251 1 55 116 chain 27039 chr12 133851895 + 16258043 16258408 THE1B 368 - 1 368 96148 74 1 0 124 1 0 62 1 2 64 0 5 15 8 6 15 chain 5509 chr12 133851895 + 16284037 16284100 MLT1C 463 - 57 120 189956 63 chain 15359 chr12 133851895 + 16354135 16354405 L1MA7 2200 + 612 893 140318 102 0 2 56 0 1 11 0 6 20 54 56 27 chain 55660 chr12 133851895 + 16377667 16378298 L1PA5 6144 - 4 635 55331 631 chain 40417 chr12 133851895 + 16378298 16378746 L1PA5 6144 + 5043 5495 68708 254 0 4 194 chain 3840 chr12 133851895 + 16411062 16411122 MER58B 340 - 9 65 209793 22 5 1 33 chain 122842 chr12 133851895 + 16415944 16417510 THE1B-int 1605 + 0 1597 30102 113 0 3 118 4 7 40 0 2 147 1 26 159 2 0 982 chain 65018 chr12 133851895 + 16432924 16433658 L1PA4 6152 + 5401 6140 50567 34 5 10 220 0 1 433 1 0 41 chain 3384 chr12 133851895 + 16451802 16451838 L1MA6 2487 + 2343 2379 217387 36 chain 19838 chr12 133851895 + 16465377 16465625 THE1B-int 1605 + 1344 1593 127688 55 1 2 192 chain 28238 chr12 133851895 + 16465636 16466002 THE1B 368 + 0 368 92165 15 2 0 25 0 5 127 2 1 195 chain 52503 chr12 133851895 + 16485296 16485955 LTR12_ 688 - 0 688 57302 14 0 1 115 0 9 27 2 9 311 0 13 165 1 0 24 chain 5166 chr12 133851895 + 16486286 16486340 LTR12_ 688 - 8 62 193391 54 chain 3697 chr12 133851895 + 16511360 16511402 L1PA16 3655 - 194 236 211980 42 chain 541777 chr12 133851895 + 16530088 16536220 L1PA4 6152 - 1 6144 2549 14 0 6 412 0 1 1939 0 1 512 0 5 78 0 1 354 2 1 513 1 2 72 2 5 574 0 3 414 1 0 508 1 0 156 1 0 118 12 6 448 chain 9042 chr12 133851895 + 16540353 16540464 Tigger3c 601 + 202 313 165369 111 chain 13546 chr12 133851895 + 16541116 16541329 Tigger3c 601 - 173 399 146186 56 1 11 18 24 25 68 0 2 46 chain 29397 chr12 133851895 + 16544090 16544502 L1PA8 5853 - 0 402 87091 93 1 0 19 13 12 28 7 1 7 1 0 14 1 0 71 2 0 43 2 1 40 0 3 70 chain 43569 chr12 133851895 + 16548369 16549125 L1PB1 5432 - 5 700 64722 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 15 22 12 4 1 0 16 1 0 38 6 5 18 1 0 49 18 12 12 5 4 28 47 11 106 1 0 191 2 9 65 chain 114552 chr12 133851895 + 16549125 16550656 L1PB1 5432 + 3220 4744 32935 35 1 0 429 0 1 43 1 2 232 0 1 12 18 26 376 2 1 12 0 1 54 6 8 79 0 2 5 2 0 74 6 8 11 11 0 95 10 0 17 chain 102270 chr12 133851895 + 16678089 16679202 L1PA3long 6157 - 8 1123 36202 166 0 2 947 chain 21637 chr12 133851895 + 16689502 16689842 THE1A 353 - 12 353 121629 78 0 1 91 1 2 25 39 40 10 1 0 45 0 1 35 2 0 13 chain 7756 chr12 133851895 + 16723892 16723976 L1PA3long 6157 + 6072 6156 172566 84 chain 6010 chr12 133851895 + 16792970 16793037 THE1B-int 1605 - 11 78 185140 67 chain 6993 chr12 133851895 + 16795530 16795611 THE1B 368 - 287 368 177524 81 chain 5788 chr12 133851895 + 16835107 16835290 L1MC1 2226 + 2031 2183 187277 15 1 0 4 32 14 12 5 7 20 3 1 19 16 6 7 1 0 16 1 0 31 chain 169241 chr12 133851895 + 16860145 16861976 L1PA2 6032 - 1553 3385 22149 1346 0 1 485 chain 143311 chr12 133851895 + 16861976 16863527 L1PA2 6032 + 4481 6032 25577 1551 chain 23913 chr12 133851895 + 16886731 16887001 L1PA5 6144 - 496 766 110848 270 chain 42944 chr12 133851895 + 16887001 16887493 L1PA5 6144 + 5652 6143 65484 161 1 0 330 chain 387862 chr12 133851895 + 16921966 16926886 L1PA7 6471 - 4 4716 10528 722 0 1 38 2 0 85 1 0 672 1 0 1113 1 0 283 0 4 50 1 0 19 0 4 208 0 9 111 2 1 432 9 12 20 1 0 32 45 19 146 0 1 141 0 1 171 0 1 36 7 0 52 6 7 41 3 1 62 190 0 217 chain 10331 chr12 133851895 + 16926492 16926605 L1PA5 6144 - 211 324 158979 113 chain 22944 chr12 133851895 + 16958247 16958510 AluYc 301 + 5 270 115889 115 0 2 148 chain 86838 chr12 133851895 + 16973912 16975037 L1PA8 5853 - 0 1126 40841 80 1 9 4 1 0 15 8 7 47 1 0 12 2 1 67 2 0 47 1 0 67 0 1 487 5 4 278 chain 7926 chr12 133851895 + 16979756 16979858 Tigger1 2417 + 1579 1681 171474 102 chain 28522 chr12 133851895 + 17021551 17021857 AluYa5 310 + 0 305 91092 132 1 0 173 chain 194629 chr12 133851895 + 17026357 17028623 L1PA6 6164 - 10 2286 19613 135 0 1 41 1 2 146 1 2 8 1 3 491 1 5 603 0 1 838 chain 2861 chr12 133851895 + 17063331 17063364 L1MA4 2864 + 2773 2806 227659 33 chain 10565 chr12 133851895 + 17094321 17094449 L1PA5 6144 - 0 129 157974 11 2 3 115 chain 23422 chr12 133851895 + 17095758 17096051 AluSg7 307 - 7 299 113527 18 2 0 155 0 1 118 chain 12404 chr12 133851895 + 17122796 17123085 THE1D 372 + 22 312 150621 34 59 51 50 0 1 15 51 53 12 0 6 68 chain 3007 chr12 133851895 + 17130122 17130155 U6 107 + 0 33 224884 33 chain 7765 chr12 133851895 + 17136801 17136885 L1PA3long 6157 + 6072 6156 172512 84 chain 553695 chr12 133851895 + 17151248 17157403 L1PA3long 6157 + 2 6157 983 1480 0 1 895 0 1 716 3 0 1802 0 1 1259 chain 108886 chr12 133851895 + 17160375 17161704 LTR12C 1709 + 0 1709 34466 262 0 1 387 0 278 184 1 0 5 3 1 106 0 4 211 0 101 72 14 13 84 chain 5821 chr12 133851895 + 17166370 17166443 MER41B 635 - 81 154 186937 73 chain 29716 chr12 133851895 + 17174836 17175256 LTR7B 505 - 11 505 85780 40 14 13 52 0 1 26 1 0 39 1 2 39 0 2 28 6 68 69 0 10 105 chain 276356 chr12 133851895 + 17176508 17179866 HERVH-int 3825 - 0 3825 14850 225 0 2 149 1 4 5 3 0 110 0 210 39 9 11 470 0 174 129 1 0 97 8 0 63 0 3 109 0 10 299 4 31 265 0 1 85 0 5 546 5 4 49 2 1 5 0 1 26 7 6 35 1 52 24 1 0 10 1 0 35 5 0 535 chain 31463 chr12 133851895 + 17179868 17180297 LTR7B 505 - 2 505 81711 49 14 13 52 0 1 26 1 0 43 0 1 38 0 2 26 3 27 12 0 38 60 0 10 105 chain 10789 chr12 133851895 + 17197411 17197675 MER1B 344 - 5 299 157038 58 37 32 23 0 18 48 63 80 12 2 0 5 0 2 16 chain 281831 chr12 133851895 + 17201858 17205141 L1PA5 6144 + 2829 6144 14543 27 1 4 281 0 3 108 0 2 310 0 1 119 5 0 660 0 8 941 0 8 146 0 15 120 5 6 490 3 1 60 2 0 5 chain 252600 chr12 133851895 + 17252422 17255542 L1PA7 6471 + 3300 6468 16097 184 1 2 6 1 0 11 0 9 17 1 0 20 0 4 448 2 3 86 2 17 132 0 1 714 1 0 30 0 1 98 0 1 124 0 1 5 2 1 189 0 1 37 9 0 180 3 1 80 0 1 139 5 7 212 0 6 159 9 28 213 chain 407737 chr12 133851895 + 17269253 17274213 L1PA5 6144 + 0 6142 9858 135 1 15 402 54 1 616 9 0 189 4 5 65 9 0 7 4 13 269 0 1 223 6 5 1230 1 0 330 1 2 165 7 5 232 3 7 280 0 1 442 0 1218 144 6 18 115 4 0 7 chain 25760 chr12 133851895 + 17306668 17306942 AluYa5 310 + 36 310 101044 274 chain 358025 chr12 133851895 + 17328666 17332603 L1PA2 6032 + 2062 6031 11400 17 0 2 1486 1 0 784 3 34 1481 5 0 7 0 5 153 chain 6010 chr12 133851895 + 17353264 17353335 L1PA16 3655 - 80 151 185136 71 chain 73837 chr12 133851895 + 17371151 17371976 L1PA4 6152 - 1 825 46599 395 3 2 427 chain 118123 chr12 133851895 + 17380401 17383349 L1PA7 6471 - 21 1515 31764 148 0 1 506 1453 12 72 2 1 89 1 0 138 0 1 204 1 2 145 0 2 108 30 13 23 0 1 28 chain 9695 chr12 133851895 + 17381095 17381206 L1P1 4361 + 4175 4286 162105 111 chain 29204 chr12 133851895 + 17392507 17392813 AluYb8 318 - 12 318 88032 306 chain 5660 chr12 133851895 + 17395727 17395793 L1PB1 5432 - 1379 1445 188478 66 chain 41141 chr12 133851895 + 17405878 17406335 L1PA3long 6157 + 5700 6157 67731 457 chain 3676 chr12 133851895 + 17415678 17415723 MLT2A2 560 - 3 47 212299 18 1 0 26 chain 3585 chr12 133851895 + 17429597 17429662 MADE1 96 - 9 96 213896 12 2 8 21 1 17 29 chain 35041 chr12 133851895 + 17434777 17435426 L1PB1 5432 - 28 626 76132 13 1 0 21 1 0 23 3 1 14 1 0 5 7 5 25 14 1 13 19 18 20 3 0 9 1 0 10 27 27 26 6 4 10 6 2 11 1 0 12 1 0 17 3 0 5 2 0 9 13 0 297 chain 66739 chr12 133851895 + 17435445 17436404 L1PB 1623 + 557 1501 49759 54 0 3 5 12 10 50 0 1 5 19 13 60 1 0 546 7 1 102 1 2 37 1 0 7 2 1 30 7 4 13 chain 7252 chr12 133851895 + 17463610 17463724 L1MA4 2864 - 318 426 175753 25 0 2 20 3 2 37 7 0 22 chain 51207 chr12 133851895 + 17469820 17470850 L1PB1 5432 - 10 906 58183 15 4 3 11 5 12 11 1 0 24 2 0 13 10 7 11 34 22 12 1 0 35 42 40 38 2 0 9 2 0 3 2 0 11 1 0 7 1 0 24 1 0 5 146 38 107 1 2 138 4 0 202 0 1 95 chain 40109 chr12 133851895 + 17540016 17540465 L1PA4 6152 - 19 469 69165 166 0 1 283 chain 24251 chr12 133851895 + 17584276 17584566 AluYb8 318 + 30 315 108943 33 2 0 247 3 0 5 chain 8760 chr12 133851895 + 17590284 17590431 L1MB1 2102 + 1917 2057 166864 25 2 0 65 12 8 22 1 0 20 chain 36225 chr12 133851895 + 17596030 17596490 THE1A-int 1579 + 938 1579 74593 69 0 181 188 1 0 55 0 1 147 chain 26276 chr12 133851895 + 17596490 17596843 THE1A 353 + 0 353 98917 81 6 7 21 2 1 92 1 0 122 0 1 28 chain 39984 chr12 133851895 + 17601775 17602209 L1PA2 6032 + 5587 6021 69339 434 chain 22659 chr12 133851895 + 17625152 17625548 LTR14B 630 + 0 630 117285 42 5 193 39 21 53 33 0 10 139 48 52 69 chain 101582 chr12 133851895 + 17627803 17628945 L1P1 4361 - 33 1175 36374 23 1 0 154 1 0 899 0 2 64 chain 41023 chr12 133851895 + 17628945 17629389 L1PA2 6032 + 5588 6032 67868 444 chain 24274 chr12 133851895 + 17631564 17631860 AluY 311 + 18 311 108816 157 1 0 118 2 0 18 chain 4196 chr12 133851895 + 17667495 17667546 L1PA16 3655 + 3463 3514 204605 51 chain 505176 chr12 133851895 + 17712046 17717843 L1PA4 6152 - 0 5819 6520 6 0 2 246 0 1 204 0 2 30 0 1 351 1 5 427 1 5 237 1 0 856 1 2 337 0 3 161 0 1 98 1 0 625 0 4 1508 1 0 45 0 3 432 1 0 227 chain 24957 chr12 133851895 + 17720771 17721057 L1PA5 6144 - 1 287 105021 286 chain 24802 chr12 133851895 + 17769266 17769602 THE1C 375 - 39 375 105883 151 1 2 63 3 0 11 1 2 62 1 2 43 chain 25820 chr12 133851895 + 17771198 17771572 THE1C 375 - 0 375 100792 25 1 0 154 17 18 24 16 0 10 0 17 127 chain 528998 chr12 133851895 + 17775506 17781630 L1PA4 6152 - 9 6152 4302 1030 0 35 1085 0 5 49 3 4 758 8 6 1907 7 8 507 13 14 6 1 0 295 0 1 230 4 5 77 24 1 120 chain 6531 chr12 133851895 + 17794557 17794634 L1PA4 6152 - 0 82 180997 6 0 5 71 chain 82616 chr12 133851895 + 17808911 17809806 L1PA2 6032 - 0 896 42499 781 0 1 114 chain 4407 chr12 133851895 + 17809806 17809854 L1PA2 6032 + 5100 5148 200788 48 chain 10898 chr12 133851895 + 17841431 17841905 MLT2B3 573 + 1 481 156598 41 199 206 69 13 14 35 93 91 24 chain 19387 chr12 133851895 + 17844714 17844936 L1PA5 6144 + 5922 6144 128982 222 chain 533204 chr12 133851895 + 17852312 17858478 L1PA4 6152 - 6 6152 3820 411 9 6 822 1 0 235 0 1 990 1 0 365 3 2 10 0 1 495 0 1 256 0 1 702 0 4 542 10 2 329 3 1 107 0 1 126 1 0 198 24 12 526 chain 26558 chr12 133851895 + 17873198 17873582 LTR7 482 - 13 482 97813 36 12 14 151 6 41 6 0 10 96 8 46 69 chain 244297 chr12 133851895 + 17874826 17877910 HERVH-int 3825 - 0 3221 16541 262 0 1 134 20 21 77 0 210 22 4 7 247 76 0 192 1 0 354 0 1 432 4 1 178 0 5 809 10 9 68 3 8 7 2 0 50 9 9 19 1 0 32 0 20 19 24 0 13 1 0 14 chain 8693 chr12 133851895 + 17882963 17883064 L1PA5 6144 - 3 104 167230 101 chain 30613 chr12 133851895 + 17888588 17888929 L1PA3long 6157 + 5812 6153 83183 341 chain 208913 chr12 133851895 + 17890044 17892370 L1PA3long 6157 + 3805 6155 18572 552 0 4 279 0 1 153 0 13 500 0 6 842 chain 17269 chr12 133851895 + 17894205 17894388 L1HS 6032 - 0 183 134867 183 chain 90096 chr12 133851895 + 17907256 17908497 L1P3 4156 - 17 1236 39613 24 2 1 7 2 0 234 9 17 28 6 8 59 6 0 23 0 1 134 2 0 103 2 0 54 21 0 137 12 13 376 chain 9712 chr12 133851895 + 17908497 17908621 L1P1 4361 + 4198 4321 160452 107 1 0 16 chain 32043 chr12 133851895 + 17908642 17909130 L1PA8 5853 + 5364 5853 80793 86 21 20 94 1 0 42 6 4 40 0 8 20 2 1 9 19 19 36 1 0 17 1 0 93 chain 11911 chr12 133851895 + 17917000 17917135 MER85 139 - 0 135 152548 135 chain 2889 chr12 133851895 + 17921017 17921050 L1M2 1805 + 1487 1520 227204 33 chain 550730 chr12 133851895 + 17921294 17927323 L1PA2 6032 - 1 6028 1349 781 1 0 92 8 5 3152 0 1 1789 0 1 206 chain 189469 chr12 133851895 + 17934313 17936483 L1PA5 6144 - 1866 4043 20100 1031 0 3 183 0 1 685 0 4 61 1 0 209 chain 147418 chr12 133851895 + 17936492 17938231 L1PA5 6144 + 4391 6132 24975 237 1 0 878 0 1 48 0 1 100 1 0 331 5 0 10 2 9 126 chain 4654 chr12 133851895 + 17949578 17949642 L1MA3 4352 + 4134 4201 199021 36 1 4 27 chain 186596 chr12 133851895 + 17956684 17958797 L1PA3long 6157 - 0 2112 20363 46 0 2 797 8 5 1139 2 1 99 1 2 21 chain 237869 chr12 133851895 + 17958797 17961467 L1PA3long 6157 + 1374 4049 16890 602 0 1 802 0 1 397 1 0 32 2 0 21 0 2 60 0 1 650 1 4 102 chain 263490 chr12 133851895 + 17967487 17970638 L1PA6 6164 - 10 3178 15509 136 16 15 119 0 1 55 1 2 502 1 9 867 3 10 35 1 0 389 1 0 318 1 0 395 0 1 110 0 1 6 1 0 95 0 1 94 0 2 5 chain 360008 chr12 133851895 + 17975532 17979707 L1PA4 6152 + 1967 6143 11363 350 1 0 964 5 6 520 0 1 145 33 30 274 1 2 1773 6 7 84 1 2 18 chain 36013 chr12 133851895 + 17986290 17986682 L1PA4 6152 + 4888 5280 74878 392 chain 75899 chr12 133851895 + 17986682 17987534 L1PA4 6152 + 5291 6143 45544 852 chain 549300 chr12 133851895 + 18008502 18014499 L1PA2 6032 + 0 6032 1536 136 0 25 106 0 1 843 0 2 4394 0 5 374 1 3 143 chain 106213 chr12 133851895 + 18023284 18024660 L1P3 4156 + 2768 4139 35206 232 7 0 235 0 3 282 1 0 237 0 1 242 5 7 97 3 1 11 6 5 18 chain 516444 chr12 133851895 + 18052653 18059508 L1PA7 6471 - 6 6471 5533 335 0 1 119 8 0 80 0 1 123 342 0 137 1 0 52 0 3 141 1 2 13 1 0 87 6 4 640 0 20 114 1 0 391 0 1 155 0 1 348 1 0 36 32 5 99 4 8 26 5 4 279 1 0 191 0 1 413 3 0 263 0 1 593 0 1 145 0 1 414 1 5 424 1 18 108 0 2 248 1 2 193 62 1 49 1 0 167 chain 3730 chr12 133851895 + 18059230 18059273 L1PA7 6471 - 3126 3169 211461 43 chain 521956 chr12 133851895 + 18176733 18182848 L1PA4 6152 + 1 6141 4965 144 14 0 312 4 2 154 1 2 197 6 23 397 5 4 123 3 22 669 0 1 1107 1 0 103 3 0 115 1 10 294 3 0 294 0 1 1243 0 1 4 1 0 619 0 1 154 7 0 6 1 8 130 chain 339359 chr12 133851895 + 18186412 18190471 HERV9-int 5642 + 1614 5642 11914 610 9 12 2191 0 1 392 0 1 195 8 5 5 0 3 202 1 0 222 10 8 38 2 0 26 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 103492 chr12 133851895 + 18193005 18194376 LTR12C 1709 + 0 1709 35866 338 0 43 85 1 0 5 0 2 35 5 6 77 1 0 59 0 278 158 0 47 78 0 17 9 48 0 216 4 5 169 1 0 82 chain 81122 chr12 133851895 + 18215546 18216564 MER11B 1079 - 37 1079 43125 23 7 5 25 0 1 16 1 0 199 1 3 436 1 18 51 0 2 33 0 5 225 chain 137573 chr12 133851895 + 18221769 18223526 HERV17-int 4347 + 13 3881 26548 14 1 0 51 1 0 35 2 0 26 1 0 134 1 0 54 0 430 179 0 4 268 0 1 64 9 11 25 0 6 37 1 2 108 7 9 98 1 0 118 7 6 119 0 1 247 0 1672 149 chain 112621 chr12 133851895 + 18244142 18245412 L1PA4 6152 - 9 1285 33495 134 0 1 680 0 1 19 0 4 437 chain 163796 chr12 133851895 + 18245412 18247248 L1P1 4361 + 1863 3698 22834 1722 3 2 111 chain 22868 chr12 133851895 + 18279952 18280317 THE1B 368 + 0 368 116240 13 2 0 24 0 5 19 30 33 78 15 14 6 2 0 176 chain 12269 chr12 133851895 + 18286323 18286614 THE1B 368 + 0 306 151118 47 81 88 34 13 12 17 0 3 7 3 7 25 1 0 17 0 2 41 0 1 5 chain 9643 chr12 133851895 + 18317788 18317927 THE1B 368 - 222 368 162388 32 6 12 15 5 6 81 chain 61542 chr12 133851895 + 18322881 18323756 HSMAR1 1287 - 1 874 52094 54 12 7 288 18 21 193 1 0 7 11 12 17 0 2 115 9 6 50 5 6 95 chain 54957 chr12 133851895 + 18324704 18325439 MER57-int 2662 + 1595 2338 55732 234 0 7 74 3 0 55 6 8 140 0 1 109 18 19 96 chain 197018 chr12 133851895 + 18327990 18330934 HERVIP10FH-int 2884 + 208 2866 19424 4 1 0 182 1 0 71 0 2 364 0 1 103 5 6 135 3 0 132 2 0 172 18 12 6 1 0 8 1 0 63 10 1 111 100 74 11 20 3 43 22 10 39 10 0 3 1 0 20 3 2 58 0 1 205 1 0 200 5 4 20 1 0 365 1 0 66 6 5 45 1 0 17 1 0 13 14 8 31 207 22 9 2 0 11 chain 33186 chr12 133851895 + 18331007 18331490 LTR10F 562 + 0 562 78925 106 5 117 5 0 3 31 52 15 88 4 5 192 chain 18963 chr12 133851895 + 18331785 18332131 MER51B 395 + 6 395 130199 27 21 40 24 0 6 103 45 59 56 5 9 65 chain 7236 chr12 133851895 + 18332131 18332220 HSMAR1 1287 - 1192 1283 175855 79 0 2 10 chain 110554 chr12 133851895 + 18340785 18342181 L1PA8 5853 + 4452 5853 34066 554 3 5 76 0 1 108 0 3 41 0 3 321 1 0 13 0 4 23 6 4 71 1 0 5 6 5 51 2 1 10 1 0 9 1 0 93 chain 21891 chr12 133851895 + 18347375 18347653 AluSp 311 - 23 301 120657 74 0 2 6 3 1 195 chain 33586 chr12 133851895 + 18348594 18349092 LTR7 482 + 2 482 78265 113 51 0 111 0 2 6 0 29 152 16 18 49 chain 250362 chr12 133851895 + 18349094 18352297 HERVH-int 3825 + 0 3825 16222 162 0 1 116 8 10 34 12 11 74 0 772 371 1 2 133 0 5 610 0 1 131 0 1 153 5 0 378 170 5 46 1 0 8 1 8 215 0 4 574 chain 35827 chr12 133851895 + 18356165 18356661 LTR7 482 + 0 482 75096 180 51 0 50 0 31 117 0 4 37 12 14 49 chain 5105 chr12 133851895 + 18374902 18374959 MER132 119 - 56 113 194043 57 chain 4727 chr12 133851895 + 18385088 18385145 L1MA4A 3247 - 1521 1578 198203 57 chain 227106 chr12 133851895 + 18387781 18390574 L1PA7 6471 - 2 2789 17483 496 5 1 258 7 6 87 1 0 25 1 0 4 0 1 167 18 12 119 4 2 430 4 0 43 0 1 870 0 11 254 chain 33409 chr12 133851895 + 18426135 18426499 L1PA4 6152 - 1229 1593 78408 364 chain 42335 chr12 133851895 + 18426499 18426979 L1PA4 6152 + 4901 5384 66224 400 0 3 80 chain 69995 chr12 133851895 + 18426980 18427748 L1PA4 6152 + 5384 6152 48397 768 chain 26266 chr12 133851895 + 18476872 18477164 AluYf4 310 + 0 292 98952 292 chain 27659 chr12 133851895 + 18486232 18486567 L1PA7 6471 - 10 342 94184 159 0 1 109 5 1 62 chain 97589 chr12 133851895 + 18531354 18532446 L1PA5 6144 + 5036 6132 37398 239 0 4 853 chain 34498 chr12 133851895 + 18561056 18561469 L1PA7 6471 - 1058 1472 76912 208 0 1 205 chain 82249 chr12 133851895 + 18561470 18562493 L1PA7 6471 + 5436 6470 42656 174 0 1 9 2 1 20 9 21 287 2 3 507 2 0 11 chain 305439 chr12 133851895 + 18602232 18606366 L1PA8 5853 - 0 3879 13193 93 1 0 17 1 0 45 5 0 6 1 5 8 3 2 115 1 0 78 2 0 146 0 18 75 0 1 106 1 2 31 0 3 17 1 3 64 314 8 143 0 2 92 1 0 51 0 6 57 1 0 319 0 1 295 2 0 5 0 2 104 0 2 236 0 5 104 1 0 400 9 10 212 0 5 77 1 0 103 17 18 111 0 1 371 0 4 40 0 8 172 0 1 79 chain 101347 chr12 133851895 + 18652898 18654112 LTR12C 1709 + 0 1709 36433 206 0 1 93 0 1 188 0 1 172 2 490 72 0 4 481 chain 9276 chr12 133851895 + 18661565 18661692 MER85 139 - 0 138 164180 29 3 14 95 chain 264784 chr12 133851895 + 18670271 18674157 L1PA10 4194 - 201 4019 15452 287 0 1 4 1 0 100 0 1 292 3 0 309 0 1 104 3 6 5 3 0 200 0 4 59 0 1 60 0 3 24 74 69 232 3 5 67 2 1 21 0 3 110 4 14 118 0 3 178 2 0 7 0 2 286 6 11 13 1 0 6 103 99 406 0 1 21 0 3 367 10 8 23 37 13 42 2 0 8 7 0 12 6 1 12 13 8 6 1 0 21 2 0 22 46 21 5 1 0 15 2 0 7 26 24 9 2 0 10 10 6 9 2 0 10 3 0 8 2 0 14 chain 8400 chr12 133851895 + 18672855 18672949 SVA_A 1864 + 1770 1864 168854 94 chain 22999 chr12 133851895 + 18688780 18689049 L1PA4 6152 + 5879 6152 115624 125 1 0 137 0 5 6 chain 27054 chr12 133851895 + 18696264 18696721 L1PA14 3548 - 83 517 96099 9 6 0 42 1 0 16 25 21 35 5 1 10 1 0 26 1 2 82 1 0 84 9 6 11 13 9 80 chain 185913 chr12 133851895 + 18750540 18752587 L1PA3long 6157 + 4103 6152 20419 936 0 1 266 0 1 695 1 8 7 7 0 135 chain 14541 chr12 133851895 + 18754223 18754490 L1MA5A 2387 + 2063 2296 142754 8 0 2 34 1 0 51 6 4 25 1 0 28 3 0 15 18 0 7 11 0 59 chain 274592 chr12 133851895 + 18754764 18758517 L1PBa1 4058 + 300 4040 14946 11 5 0 115 1 2 138 1 0 24 42 41 14 7 13 153 1 2 228 1 2 7 0 5 60 0 1 203 0 1 247 2 1 80 0 4 10 1 0 351 7 8 44 0 1 326 0 1 61 13 0 10 6 8 129 0 4 705 1 0 81 7 12 32 0 1 44 1 7 7 6 0 62 1 0 81 0 3 26 2 1 5 1 0 29 1 0 45 2 0 104 3 1 19 1 0 6 4 0 19 2 0 19 2 1 4 1 0 4 3 0 21 1 0 9 2 1 10 13 9 8 1 0 17 7 6 36 chain 123477 chr12 133851895 + 18760242 18761651 L1PA4 6152 + 4748 6151 29889 285 0 1 301 5 4 156 14 7 42 0 1 606 chain 12856 chr12 133851895 + 18768399 18768562 L1PB1 5432 - 344 509 148815 86 0 2 77 chain 19973 chr12 133851895 + 18789179 18789453 AluSp 311 - 25 300 127225 108 7 8 13 1 0 14 7 8 124 chain 11598 chr12 133851895 + 18812609 18812747 L1PA4 6152 - 0 138 153898 138 chain 51266 chr12 133851895 + 18817539 18818101 L1PA3long 6157 + 5595 6157 58147 562 chain 13278 chr12 133851895 + 18842276 18842491 MER30 238 + 0 238 147178 15 24 31 62 3 0 6 2 24 61 3 0 39 chain 71305 chr12 133851895 + 18863666 18864463 L1PA4 6152 + 5339 6136 47792 797 chain 5650 chr12 133851895 + 18867644 18867819 MER20 218 + 41 218 188566 41 64 59 37 20 27 13 chain 18718 chr12 133851895 + 18897811 18898125 L1PA15 4387 + 4063 4366 130906 41 1 0 26 1 0 54 2 1 21 4 0 11 1 0 50 6 3 35 1 7 15 10 5 24 1 0 10 chain 3178 chr12 133851895 + 18905809 18905904 MER58C 217 - 39 148 221382 28 46 60 21 chain 40402 chr12 133851895 + 18907461 18908019 MER41B 635 + 66 635 68734 59 9 10 94 12 23 208 9 8 167 chain 522447 chr12 133851895 + 18913590 18919940 L1PA7 6471 + 1 6469 4914 399 4 5 144 0 1 7 11 14 145 3 33 282 1 5 37 0 1 134 0 1 544 1 0 457 8 101 39 0 1 38 26 0 248 1 2 418 0 1 513 1 4 37 2 0 319 0 3 1021 4 1 434 0 12 220 0 2 712 7 0 133 chain 3547 chr12 133851895 + 18929207 18929264 MLT1D 503 - 1 59 214590 42 4 5 11 chain 278289 chr12 133851895 + 18930566 18934523 L1PA8A 6298 + 2712 6290 14736 253 0 4 384 28 13 52 1 5 55 0 7 202 107 11 158 15 16 463 311 22 6 0 1 134 2 0 34 5 8 245 0 1 464 3 0 239 2 1 383 0 2 6 2 0 226 1 7 176 chain 7466 chr12 133851895 + 18931541 18931638 L1PA8A 6298 + 3588 3685 169315 97 chain 556932 chr12 133851895 + 18938153 18944305 L1PA3long 6157 + 6 6157 615 2184 1 0 3967 chain 2725 chr12 133851895 + 18950983 18951032 MLT1C 463 + 125 174 229792 12 1 0 11 5 6 20 chain 164417 chr12 133851895 + 18985166 18987626 L1PA11 4918 + 2366 4629 22758 53 0 2 119 11 0 119 0 7 163 9 8 151 0 2 46 5 1 1018 163 7 176 7 8 85 13 6 56 2 1 80 2 0 14 1 0 19 41 32 15 1 0 9 64 48 18 chain 12742 chr12 133851895 + 18986860 18987022 L1PA11 4918 - 1133 1295 149282 162 chain 466021 chr12 133851895 + 19043221 19049461 L1PA8A 6298 - 7 6221 8186 84 1 0 93 4 7 120 1 0 92 1 4 130 2 0 217 0 1 13 0 4 35 0 3 40 0 7 147 1 0 43 3 0 41 0 15 8 32 10 334 1 3 105 0 6 29 1 0 191 1 0 30 0 2 42 0 1 171 0 2 4 0 1 239 1 0 138 1 2 71 1 0 106 22 9 242 4 13 64 1 0 12 0 1 384 2 6 459 4 0 236 4 0 10 0 3 65 0 1 179 0 2 94 0 2 150 0 3 661 0 4 155 0 1 136 4 0 22 16 17 258 6 5 37 14 14 20 4 2 7 1 0 13 7 5 78 8 0 22 1 0 37 35 27 9 2 1 5 1 0 8 1 0 13 6 4 17 2 0 11 1 0 6 2 0 12 2 1 9 3 2 16 21 11 19 4 1 22 chain 40644 chr12 133851895 + 19071008 19071568 L1PA11 4918 + 3954 4508 68380 19 0 1 212 2 1 206 2 1 13 2 0 67 2 0 14 2 1 19 chain 8508 chr12 133851895 + 19077648 19077764 L1PB4 2604 - 254 369 168253 89 3 2 24 chain 23787 chr12 133851895 + 19087338 19087622 AluY 311 + 2 304 111548 130 0 1 132 0 17 22 chain 58383 chr12 133851895 + 19097498 19098222 L1PA8 5853 - 0 717 53758 93 1 0 19 2 1 47 17 15 70 2 0 46 1 0 426 chain 17118 chr12 133851895 + 19101722 19102067 L1PB3 3668 + 3294 3613 135261 48 0 2 18 0 25 3 25 0 88 20 4 13 1 0 8 1 0 25 3 1 37 7 3 13 1 0 12 8 5 14 chain 29665 chr12 133851895 + 19153437 19153762 AluYb8 318 - 0 316 85981 186 9 0 130 chain 15413 chr12 133851895 + 19177977 19178186 MER57F 435 + 0 212 140160 22 11 14 176 chain 18233 chr12 133851895 + 19186800 19187008 THE1D-int 1627 - 1404 1612 132251 208 chain 41301 chr12 133851895 + 19196427 19196886 L1PA3long 6157 - 2 461 67532 459 chain 30929 chr12 133851895 + 19203923 19204296 L1PA7 6471 - 1 375 82636 332 4 5 37 chain 5284 chr12 133851895 + 19225039 19225115 L1PA7 6471 + 6399 6467 192167 60 8 0 8 chain 50017 chr12 133851895 + 19245127 19245693 SVA_B 1603 + 999 1603 59003 17 1 38 483 0 1 65 chain 5410 chr12 133851895 + 19279072 19279147 Tigger1 2417 - 122 198 190896 44 0 2 23 1 0 7 chain 22604 chr12 133851895 + 19311019 19311297 AluY 311 + 15 293 117573 94 2 1 16 0 1 166 chain 30205 chr12 133851895 + 19325939 19326256 AluYb8 318 - 1 318 84182 317 chain 23051 chr12 133851895 + 19329804 19330089 AluSc5 308 - 17 298 115391 100 4 0 181 chain 5240 chr12 133851895 + 19371878 19371934 L1HS 6032 - 2 58 192616 56 chain 104119 chr12 133851895 + 19382199 19383767 LTR12C 1709 - 0 1623 35714 82 1 0 86 1 0 73 23 0 238 46 15 76 8 71 158 21 61 4 0 1 7 1 0 74 1 0 48 0 2 102 23 24 68 0 1 32 20 22 43 4 3 5 0 1 147 0 2 5 50 51 121 chain 10827 chr12 133851895 + 19413675 19413801 AluSq2 311 + 165 291 156883 126 chain 29577 chr12 133851895 + 19450274 19450584 AluYb9 318 + 0 310 86291 310 chain 23954 chr12 133851895 + 19453786 19454099 AluSp 311 + 0 297 110593 120 16 0 177 chain 23761 chr12 133851895 + 19478668 19478953 AluSp 311 + 8 294 111702 74 0 1 211 chain 20597 chr12 133851895 + 19485985 19486230 AluSp 311 + 49 293 125306 83 1 0 161 chain 59414 chr12 133851895 + 19493245 19493896 SVA_D 2077 + 1159 2076 53165 107 0 262 448 0 4 96 chain 30603 chr12 133851895 + 19524620 19525427 L1PB2 3958 - 120 665 83193 51 14 13 21 2 0 74 8 7 55 1 0 72 1 0 5 299 0 42 7 68 56 14 0 13 1 0 4 1 0 50 2 0 14 chain 6625 chr12 133851895 + 19527186 19527263 LTR17 781 - 455 532 180268 77 chain 34739 chr12 133851895 + 19566524 19567283 MER41A 554 - 115 554 76558 193 0 1 87 321 0 158 chain 166445 chr12 133851895 + 19581923 19583807 L1PA4 6152 - 11 1897 22465 832 7 8 73 0 1 328 0 1 346 1 0 297 chain 5259 chr12 133851895 + 19588800 19588858 MER39 703 + 0 58 192420 58 chain 67407 chr12 133851895 + 19628454 19631873 L1PB2 3958 - 203 3198 49482 32 57 19 23 1 0 65 0 4 65 3 2 39 4 68 61 7 0 16 2 1 53 2 0 36 37 0 315 2251 1841 31 1 0 58 1 6 165 12 10 47 4 7 31 chain 3950 chr12 133851895 + 19702826 19702903 MLT1C 463 - 298 368 208127 28 1 0 5 17 11 26 chain 86477 chr12 133851895 + 19709951 19711241 L1MA3 4352 - 1629 2889 40977 70 0 1 70 1 0 139 6 8 68 0 9 45 1 0 39 0 1 37 0 13 175 0 1 56 12 11 129 0 9 29 0 4 31 10 12 113 64 0 71 5 1 53 1 0 65 chain 15484 chr12 133851895 + 19711281 19711655 L1PB1 5432 - 10 346 139943 16 3 2 13 1 0 21 1 0 24 5 4 11 1 0 4 2 0 19 25 12 12 10 9 39 2 1 10 6 5 53 1 0 8 22 17 4 1 0 23 5 0 12 3 0 17 chain 97855 chr12 133851895 + 19718420 19719503 L1PA4 6152 - 1 1083 37195 767 1 0 315 chain 233915 chr12 133851895 + 19719503 19722089 L1PA4 6152 + 2488 5081 17093 926 0 4 272 0 1 596 0 2 792 chain 22363 chr12 133851895 + 19737353 19737735 THE1B 368 + 0 368 118658 44 79 66 62 7 6 190 chain 17729 chr12 133851895 + 19738998 19739235 L1PB2 3958 + 3602 3838 133623 16 1 0 61 1 0 73 2 0 23 1 0 21 0 4 38 chain 4255 chr12 133851895 + 19744390 19744582 MER3 215 + 19 210 203800 43 11 113 12 22 0 5 81 0 18 chain 3629 chr12 133851895 + 19766758 19766796 tRNA-Phe-TTY 73 + 0 38 213185 38 chain 27377 chr12 133851895 + 19778661 19779016 THE1A 353 + 0 353 95032 109 2 1 92 1 0 151 chain 59050 chr12 133851895 + 19816101 19816803 L1PA7 6471 - 2 698 53365 8 6 0 688 chain 11537 chr12 133851895 + 19827744 19827885 AluJb 308 + 72 228 154156 7 0 15 134 chain 352007 chr12 133851895 + 19829483 19834055 L1PB1 5432 - 31 5413 11548 9 1 0 16 7 6 24 2 0 12 10 7 22 21 9 16 1 0 10 0 1 32 1 0 16 3 2 49 30 23 9 1 0 24 0 838 21 0 15 513 1 0 376 0 1 121 0 1 146 0 1 235 5 4 342 0 1 223 0 3 552 12 22 22 10 9 266 8 0 7 1 0 639 0 4 150 6 11 185 15 0 7 13 0 380 chain 69002 chr12 133851895 + 19845663 19846755 L1PB1 5432 + 4346 5422 48805 124 12 13 25 1 3 75 19 23 19 0 2 455 0 4 26 0 1 22 1 0 5 5 4 11 5 1 9 2 0 52 2 1 16 1 0 45 1 0 14 23 12 18 25 20 23 2 1 22 9 8 4 1 0 18 chain 32926 chr12 133851895 + 19860254 19860697 LTR12_ 688 - 260 688 79327 264 19 2 137 1 0 17 0 3 5 chain 25681 chr12 133851895 + 19869925 19870224 AluSp 311 - 9 311 101368 208 0 3 91 chain 3094 chr12 133851895 + 19878851 19878900 MER52A 1651 - 715 755 223039 20 9 0 20 chain 554219 chr12 133851895 + 19881636 19887777 L1PA3long 6157 - 15 6157 921 834 0 4 2041 0 1 2070 0 3 476 7 0 713 chain 21636 chr12 133851895 + 19890623 19890900 AluSg7 307 - 21 296 121635 157 3 0 20 1 2 96 chain 26959 chr12 133851895 + 19891429 19891733 AluY 311 + 5 310 96410 127 0 1 177 chain 91934 chr12 133851895 + 19901158 19902545 L1PA11 4918 - 289 1634 38986 18 64 48 9 1 0 15 14 9 10 21 12 21 1 0 12 2 0 68 17 14 61 6 1 289 0 3 44 0 1 92 3 0 47 7 5 149 0 2 7 4 0 317 1 4 87 chain 14236 chr12 133851895 + 19919585 19919739 L1HS 6032 + 5878 6032 143774 154 chain 59620 chr12 133851895 + 19927368 19928284 L1PB1 5432 - 8 1105 53040 4 1 0 25 1 4 22 1 0 23 2 0 13 9 6 19 24 12 16 1 0 43 21 19 51 2 0 9 20 15 5 1 0 24 11 11 106 2 3 348 0 207 112 chain 300828 chr12 133851895 + 19967448 19970854 L1P1 4361 + 1 3411 13379 503 0 1 69 10 9 498 0 3 2079 1 2 246 chain 43031 chr12 133851895 + 19976313 19976848 LTR12_ 688 + 0 688 65381 132 0 49 171 0 103 175 0 1 57 chain 54207 chr12 133851895 + 19985075 19985729 L1PA8 5853 - 0 647 56225 93 1 0 16 1 0 51 1 0 14 1 0 71 2 0 44 1 0 358 chain 28497 chr12 133851895 + 19989736 19990076 L1PA6 6164 - 203 551 91191 320 1 9 19 chain 14540 chr12 133851895 + 19990076 19990257 L1PA6 6164 + 5975 6156 142758 35 1 0 125 0 1 20 chain 71984 chr12 133851895 + 19998247 19999153 L1PA8 5853 - 0 896 47479 91 3 2 18 1 0 52 14 12 65 7 5 44 1 0 250 1 0 304 2 0 53 chain 66986 chr12 133851895 + 20007608 20008410 L1PA8A 6298 - 11 814 49659 106 1 2 695 chain 14120 chr12 133851895 + 20010080 20010235 L1PA3long 6157 + 6002 6157 144139 155 chain 36612 chr12 133851895 + 20024713 20025324 L1PB1 5432 + 4842 5427 74082 163 0 4 94 1 2 9 3 0 20 1 0 13 27 20 53 2 1 9 7 6 40 40 32 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 13027 chr12 133851895 + 20071287 20071466 L1P3 4156 + 3932 4114 148145 74 8 13 88 2 0 7 chain 24035 chr12 133851895 + 20087850 20088213 THE1B 368 + 0 368 110138 104 1 0 14 2 3 48 1 0 29 0 3 13 13 16 10 1 0 87 5 6 35 chain 3382 chr12 133851895 + 20105780 20105819 MER33 330 + 0 39 217432 39 chain 35772 chr12 133851895 + 20119274 20119682 L1PA4 6152 - 10 419 75174 103 0 1 305 chain 9644 chr12 133851895 + 20127085 20127200 L1PA5 6144 - 16 131 162376 115 chain 34385 chr12 133851895 + 20146933 20147336 L1PA6 6164 + 5756 6160 77088 344 0 1 59 chain 58390 chr12 133851895 + 20162647 20163402 LTR12 884 - 2 884 53754 180 0 102 88 0 3 126 2 0 243 0 25 90 1 0 25 chain 6810 chr12 133851895 + 20181927 20182004 L1PA4 6152 - 12 89 178869 77 chain 25198 chr12 133851895 + 20186074 20186382 AluY 311 + 0 307 103749 62 3 0 67 1 3 175 chain 245735 chr12 133851895 + 20211715 20214692 L1PA7 6471 - 1 2961 16470 13 1 4 144 16 15 155 1 0 55 33 5 458 1 0 202 0 4 78 11 9 417 0 1 88 0 4 436 0 2 467 0 1 337 0 1 64 chain 481972 chr12 133851895 + 20219546 20225799 L1PA8A 6298 + 64 6291 7656 6 2 0 8 6 1 20 4 1 18 23 14 15 45 40 17 7 4 12 26 22 15 4 0 8 1 0 66 6 0 37 0 3 36 2 0 15 1 0 11 4 2 247 11 12 412 45 36 82 1 0 1116 0 1 31 12 8 99 0 1 83 2 1 14 0 3 61 5 3 113 6 10 176 4 0 21 0 4 261 0 11 200 0 4 174 0 1 236 4 6 16 1 2 676 3 7 450 0 1 192 3 2 352 0 1 619 1 2 7 0 5 8 5 0 89 chain 40690 chr12 133851895 + 20229576 20230171 L1PA8 5853 + 5266 5847 68310 107 3 6 32 3 13 140 1 0 46 2 0 37 6 0 6 20 5 20 2 1 61 2 1 19 2 1 86 chain 20044 chr12 133851895 + 20241698 20242024 L1PA17 2846 + 2385 2692 126996 112 52 36 26 1 0 73 1 0 17 1 0 43 chain 10451 chr12 133851895 + 20245145 20245296 L1PBa1 4058 + 10 157 158486 24 3 2 11 5 3 5 1 0 102 chain 103550 chr12 133851895 + 20245313 20246762 LTR12C 1709 - 224 1709 35851 72 0 4 181 35 4 90 0 47 27 8 7 5 0 1 210 1 0 124 41 0 242 12 7 83 0 43 38 6 22 17 4 5 38 4 7 211 chain 2995 chr12 133851895 + 20246066 20246107 LTR12C 1709 - 837 877 89334 35 1 0 5 chain 15823 chr12 133851895 + 20248639 20248928 L1PB4 2604 + 2297 2572 138880 77 51 35 35 15 16 14 0 1 97 chain 3693 chr12 133851895 + 20267141 20267180 MLT2A2 560 - 0 39 212042 39 chain 133553 chr12 133851895 + 20267180 20268727 LTR12C 1709 - 0 1709 27308 481 0 4 107 3 1 5 1 0 115 0 159 399 0 1 346 0 1 90 chain 33225 chr12 133851895 + 20308921 20309280 L1PA2 6032 - 3 362 78838 359 chain 44966 chr12 133851895 + 20313650 20314245 L1P3 4156 - 2818 3411 63095 369 0 1 67 15 15 20 6 2 46 0 1 72 chain 61125 chr12 133851895 + 20322796 20323495 L1PA4 6152 - 9 710 52284 151 13 14 498 0 1 37 chain 3658 chr12 133851895 + 20345492 20345536 MADE1 96 + 1 46 212598 25 0 1 19 chain 39174 chr12 133851895 + 20362475 20362996 HUERS-P2-int 2744 + 745 1310 70503 55 0 2 5 1 2 38 0 19 41 16 37 82 0 1 283 chain 119037 chr12 133851895 + 20383156 20384712 THE1A-int 1579 - 0 1579 31393 415 6 22 145 2 1 208 31 32 103 0 3 224 0 1 153 1 3 242 9 10 17 chain 60085 chr12 133851895 + 20392075 20392888 L1PA7 6471 - 4 752 52781 6 4 0 61 66 1 54 1 2 27 5 0 28 5 4 7 0 8 90 0 1 459 chain 13119 chr12 133851895 + 20402896 20403044 L1PA4 6152 + 6003 6151 147770 148 chain 25683 chr12 133851895 + 20438905 20439257 THE1B 368 + 0 368 101364 44 5 20 42 1 2 64 1 0 26 0 2 93 1 0 75 chain 40360 chr12 133851895 + 20454898 20455360 L1PA3long 6157 - 7 478 68789 139 1 8 99 1 0 216 0 3 6 chain 322269 chr12 133851895 + 20485907 20490022 L1P3 4156 - 40 4156 12510 9 2 0 95 14 17 169 1 0 333 5 3 46 9 3 551 0 4 368 0 2 59 0 1 43 0 21 309 1 0 56 1 0 1033 6 8 272 18 19 280 15 6 89 1 0 11 0 1 31 12 16 12 1 0 22 15 0 46 1 2 179 chain 11251 chr12 133851895 + 20515944 20516071 L1PA3long 6157 + 6030 6157 155222 127 chain 64803 chr12 133851895 + 20538147 20538873 L1PA5 6144 + 5408 6134 50657 726 chain 17629 chr12 133851895 + 20540151 20540384 L1PA10 4194 - 44 273 133910 31 12 7 183 0 1 7 chain 23914 chr12 133851895 + 20546073 20546440 THE1B 368 - 2 368 110843 73 1 0 101 20 18 57 11 12 35 6 7 63 chain 19825 chr12 133851895 + 20639055 20639427 THE1D 372 - 0 372 127731 147 1 0 25 14 16 21 0 1 30 57 63 12 10 1 29 1 0 12 0 2 13 chain 3392 chr12 133851895 + 20640189 20640229 LTR37A 408 - 77 117 217260 40 chain 27388 chr12 133851895 + 20668680 20668965 AluYa5 310 - 25 310 95008 285 chain 25531 chr12 133851895 + 20734536 20734811 AluYa5 310 - 1 276 102095 275 chain 84691 chr12 133851895 + 20804704 20805642 L1PA4 6152 - 0 939 41643 8 0 1 930 chain 18460 chr12 133851895 + 20805642 20805848 L1PA4 6152 + 5022 5227 130618 120 1 0 85 chain 15998 chr12 133851895 + 20808389 20808584 MER107 203 + 6 203 138355 126 0 1 47 0 1 22 chain 11788 chr12 133851895 + 20815308 20815471 THE1C-int 1605 + 1178 1351 153101 35 2 12 53 1 0 4 0 1 68 chain 542663 chr12 133851895 + 20820771 20826792 L1PA3long 6157 + 0 6157 2400 69 1 2 81 0 1 614 9 137 1357 0 2 2085 0 3 362 1 0 1268 0 2 174 chain 5084 chr12 133851895 + 20844095 20844158 L1PA16 3655 + 3511 3575 194245 17 0 1 46 chain 12751 chr12 133851895 + 20853386 20853538 L1PA5 6144 - 3 154 149248 6 2 0 35 0 1 109 chain 13569 chr12 133851895 + 20890806 20891133 MLT1A0 366 - 16 336 146097 15 1 0 22 0 2 65 101 95 5 1 0 15 2 0 42 11 12 47 chain 10104 chr12 133851895 + 20915730 20915842 L1HS 6032 + 4 116 160074 112 chain 38175 chr12 133851895 + 20915842 20916284 LTR7 482 + 0 474 71876 225 0 1 38 0 31 179 chain 288356 chr12 133851895 + 20916294 20920338 HERVH-int 3825 + 0 3825 14136 532 5 0 6 64 0 32 1 0 10 1 0 24 28 0 14 1 0 13 317 0 26 22 0 13 44 2 26 2 1 57 0 1 7 0 2 12 0 3 127 7 8 64 2 1 120 0 2 338 0 1 241 6 33 299 0 10 46 1 2 568 0 1 450 0 3 25 4 214 254 13 14 44 0 1 178 chain 3713 chr12 133851895 + 20916855 20916901 HERVH-int 3825 + 436 482 209253 46 chain 3604 chr12 133851895 + 20917028 20917242 HERVH-int 3825 + 631 717 213587 7 21 0 19 0 20 16 126 0 4 1 0 20 chain 37530 chr12 133851895 + 20921542 20921986 LTR7 482 + 0 476 72773 225 0 1 20 1 32 198 chain 536233 chr12 133851895 + 20922004 20928034 L1PA3long 6157 + 119 6157 3415 317 2 1 330 0 2 618 1 0 939 1 0 862 0 1 357 0 3 397 0 1 1363 0 4 843 chain 109300 chr12 133851895 + 20929534 20930910 LTR12C 1709 - 0 1709 34370 84 1 0 123 4 56 197 9 12 9 0 4 106 3 1 7 1 0 98 0 278 734 chain 310278 chr12 133851895 + 20931910 20935751 HERV9-int 5642 - 870 5642 12990 154 0 2 5 4 3 333 2 1009 211 0 5 976 0 6 961 84 0 194 9 5 113 1 0 174 0 1 620 chain 116468 chr12 133851895 + 20935850 20937279 LTR12C 1709 - 0 1709 32289 84 1 0 153 4 1 5 0 3 235 0 4 106 9 6 38 0 2 64 0 278 730 chain 3432 chr12 133851895 + 20948053 20948096 MLT1B-int 1170 - 1108 1149 216541 5 2 0 36 chain 3398 chr12 133851895 + 20960033 20960070 LTR12C 1709 - 654 691 217109 37 chain 27774 chr12 133851895 + 20970049 20970530 L1MA1 4479 - 372 861 93783 23 7 6 83 0 1 26 6 0 16 3 0 5 5 4 53 1 0 45 2 0 19 6 31 34 11 10 12 11 9 15 1 0 97 chain 292183 chr12 133851895 + 20971640 20975118 HERVH-int 3825 - 0 3825 13885 225 0 2 260 10 220 37 9 11 498 1 3 538 6 16 299 6 33 241 0 1 338 0 2 125 1 0 60 7 8 126 0 3 14 6 9 30 1 0 1 0 62 28 0 31 24 1 0 10 1 0 38 5 0 532 chain 28449 chr12 133851895 + 20975128 20975551 LTR7 482 - 8 482 91374 168 0 1 9 0 31 42 1 12 16 50 57 36 0 1 101 chain 44921 chr12 133851895 + 20982518 20983070 MER41A 554 - 0 554 63153 337 0 1 8 0 1 207 chain 85280 chr12 133851895 + 21021514 21022512 LTR13 1007 - 0 1007 41429 301 1 0 208 5 14 179 1 0 222 0 2 81 chain 10026 chr12 133851895 + 21056716 21056890 MSTA-int 1630 - 16 193 160451 37 5 6 17 2 4 35 1 0 50 13 14 14 chain 4683 chr12 133851895 + 21058975 21059051 MSTA 426 - 267 367 198709 15 12 36 49 chain 18629 chr12 133851895 + 21083660 21083873 L1PA5 6144 - 6 219 131138 213 chain 6805 chr12 133851895 + 21089427 21089879 L1MA3 4352 - 4219 4352 178909 47 315 2 47 1 0 4 23 18 15 chain 404495 chr12 133851895 + 21090426 21095640 Harlequin-int 5206 - 0 5071 9962 8 6 0 915 2 1 34 0 3 12 6 3 69 0 1 249 0 14 676 0 19 201 1 0 247 39 0 735 10 22 40 1 0 21 2 0 271 2 0 57 0 1 289 0 3 71 16 13 9 1 0 65 0 6 45 3 0 5 6 9 160 113 5 82 0 1 113 4 5 48 1 0 23 29 0 3 1 0 115 7 0 54 3 2 107 13 18 55 0 1 4 3 2 7 0 9 129 12 0 14 chain 8171 chr12 133851895 + 21094700 21094813 Harlequin-int 5206 + 1110 1228 169301 39 3 9 58 1 0 12 chain 35842 chr12 133851895 + 21097330 21097785 LTR2 463 - 0 463 75074 225 10 15 93 0 3 127 chain 433063 chr12 133851895 + 21104834 21110176 L1PA7 6471 + 1088 6466 9235 8 0 1 113 0 4 334 0 1 48 0 3 120 0 2 475 0 4 208 7 5 225 0 2 114 0 4 6 2 0 335 0 4 101 26 25 298 0 1 397 0 1 693 2 1 48 0 8 16 0 1 255 1 0 54 9 10 224 0 1 377 1 4 68 12 14 765 chain 36818 chr12 133851895 + 21122559 21123086 MLT2A2 560 + 4 552 73782 402 44 65 81 chain 494560 chr12 133851895 + 21128541 21134798 L1PA6 6164 - 4 6164 7138 20 13 21 10 1 0 85 0 2 707 0 23 7 1 2 184 179 12 40 8 0 17 1 0 1236 0 12 79 0 2 216 1 3 90 1 0 163 14 6 33 0 1 4 1 2 858 0 2 369 1 0 299 8 7 210 0 1 183 1 0 255 0 1 26 11 10 25 5 7 54 0 16 36 0 17 240 1 0 40 7 9 307 0 1 210 chain 11251 chr12 133851895 + 21129592 21129727 L1PA6 6164 + 6025 6160 155221 135 chain 21570 chr12 133851895 + 21142225 21142461 L1PA3long 6157 - 3 239 121886 236 chain 350823 chr12 133851895 + 21157420 21161749 L1PA7 6471 + 2104 6451 11573 5 2 0 240 13 6 137 1 2 125 7 19 412 0 3 167 14 18 265 1 0 346 1 0 153 0 1 318 1 0 286 0 2 394 4 5 76 1 0 338 0 1 38 8 13 148 2 0 188 0 1 41 0 1 140 0 1 8 0 1 304 2 1 143 chain 3106 chr12 133851895 + 21167120 21167155 L1PA8A 6298 - 847 882 215991 35 chain 62995 chr12 133851895 + 21167155 21167960 L1PA8A 6298 + 5473 6290 51448 20 0 5 29 0 1 40 0 2 115 0 4 486 7 0 9 1 8 98 chain 372684 chr12 133851895 + 21237191 21241540 L1P1 4361 - 20 4359 11005 12 2 1 23 1 0 153 2 1 2900 26 26 494 1 2 22 12 5 128 1 0 572 chain 141693 chr12 133851895 + 21249042 21250656 L1PA5 6144 - 7 1627 25868 413 0 5 314 0 1 42 1 2 73 1 0 770 chain 61436 chr12 133851895 + 21250656 21251358 L1PA5 6144 + 3803 4508 51957 178 0 1 4 1 0 4 0 3 515 chain 15022 chr12 133851895 + 21260779 21261033 Tigger2 2703 - 145 431 141265 34 12 16 91 10 11 20 0 27 31 9 0 13 4 13 30 chain 12964 chr12 133851895 + 21276636 21276776 L1PA3long 6157 + 5164 5304 148377 140 chain 75884 chr12 133851895 + 21276776 21277607 L1PA3long 6157 + 5308 6142 45556 317 0 3 514 chain 540723 chr12 133851895 + 21284777 21290919 L1PA4 6152 - 5 6151 2703 145 0 1 183 0 1 520 0 4 616 1 2 2735 0 4 1360 1 0 114 12 6 455 chain 173225 chr12 133851895 + 21300233 21302363 L1PA7 6471 - 12 2206 21688 126 2 6 356 13 84 101 6 8 41 0 1 32 1 2 85 1 0 384 7 5 242 13 1 720 chain 106613 chr12 133851895 + 21302363 21303736 L1P3 4156 + 24 1406 35067 227 2 1 33 0 2 35 1 0 78 0 1 4 1 0 250 0 1 19 5 12 134 5 6 462 2 1 5 0 1 110 chain 37982 chr12 133851895 + 21354816 21355309 L1PA8 5853 + 5367 5853 72160 197 1 0 44 2 0 74 9 7 50 7 6 15 4 3 90 chain 545504 chr12 133851895 + 21361994 21368021 L1PA2 6032 - 3 6029 2012 151 1 6 6 5 0 1274 3 0 78 0 3 1461 3 1 2012 0 3 564 2 1 213 1 0 253 chain 39007 chr12 133851895 + 21383767 21384216 L1PA5 6144 - 9 457 70733 244 1 0 204 chain 3222 chr12 133851895 + 21395761 21395813 L1MA1 4479 + 299 356 220542 16 5 10 31 chain 2993 chr12 133851895 + 21396611 21396643 MSTA 426 - 45 77 225143 32 chain 87289 chr12 133851895 + 21406973 21408059 L1P1 4361 - 20 1107 40649 12 2 1 23 1 0 145 1 2 8 1 0 633 0 1 170 0 3 85 1 0 4 chain 17682 chr12 133851895 + 21428039 21428236 L1PA4 6152 + 5946 6143 133741 197 chain 344795 chr12 133851895 + 21437185 21440958 L1PA2 6032 + 0 6032 11761 143 9 2269 837 1 0 2783 chain 100371 chr12 133851895 + 21479242 21480817 THE1B-int 1605 + 0 1587 36664 12 2 4 95 54 0 263 5 8 48 96 79 4 1 0 169 2 0 7 14 40 11 8 17 10 7 4 16 0 1 28 12 28 296 1 0 38 2 0 128 3 4 131 20 54 92 chain 507373 chr12 133851895 + 21513369 21519471 L1PA6 6164 + 2 6146 6375 110 12 11 16 6 18 37 1 2 273 0 1 39 2 1 230 6 7 192 0 25 305 14 12 509 4 0 542 4 6 59 0 4 1820 0 1 172 0 1 920 1 0 698 1 5 124 1 0 4 chain 28940 chr12 133851895 + 21534061 21534449 L1PB3 3668 + 2808 3191 89271 177 2 0 20 3 0 43 1 0 34 3 4 105 chain 552092 chr12 133851895 + 21547943 21553973 L1PA2 6032 + 0 6031 1182 1114 0 1 2271 2 1 350 0 1 2293 chain 549743 chr12 133851895 + 21572149 21578168 L1PA2 6032 + 10 6032 1482 247 1 0 474 6 5 1677 0 1 60 0 3 2378 0 1 1176 chain 189378 chr12 133851895 + 21617662 21619822 L1PA5 6144 - 0 2234 20111 17 0 1 79 0 56 701 0 4 937 0 2 92 0 3 254 0 4 34 0 4 46 chain 10200 chr12 133851895 + 21622582 21622725 MER30 238 + 71 232 159620 22 0 3 9 7 22 105 chain 4501 chr12 133851895 + 21640820 21640875 MLT1A0 366 + 257 312 200769 55 chain 12276 chr12 133851895 + 21694817 21694965 L1PA16 3655 - 80 228 151091 148 chain 21140 chr12 133851895 + 21696525 21696816 L1PA8 5853 - 0 288 123406 13 0 1 79 1 0 19 2 1 34 14 15 14 1 0 69 2 0 43 chain 13842 chr12 133851895 + 21700254 21700689 L1MC1 2226 + 1778 2184 145091 64 12 6 6 0 3 30 7 1 29 8 7 35 141 124 20 26 26 7 1 0 16 1 0 32 chain 21961 chr12 133851895 + 21703947 21704187 L1PA2 6032 - 4 244 120386 240 chain 33741 chr12 133851895 + 21734114 21734534 LTR2 463 + 0 463 78028 129 0 3 131 0 40 160 chain 263708 chr12 133851895 + 21735614 21738941 HERVL-int 5654 + 0 5654 15498 347 0 2281 109 0 3 86 5 6 246 0 3 130 0 9 68 0 1 4 1 0 783 0 1 134 0 12 357 3 17 160 6 0 417 1 21 30 16 4 348 0 1 76 chain 28942 chr12 133851895 + 21764211 21764520 AluYb8 318 + 0 308 89267 132 1 0 176 chain 25052 chr12 133851895 + 21772537 21772824 AluY 311 + 0 294 104533 47 0 6 79 0 1 161 chain 513898 chr12 133851895 + 21774174 21780644 L1PA6 6164 - 4 6164 5790 6 2 0 288 0 1 422 0 5 108 26 8 10 1 0 378 319 0 159 0 1 260 0 1 67 0 1 325 0 3 40 0 1 106 0 2 53 1 5 202 7 1 4 1 0 523 1 3 732 0 1 110 0 1 732 0 1 651 0 6 433 11 10 90 1 2 5 1 0 10 18 26 367 chain 29572 chr12 133851895 + 21775425 21775734 AluYa5 310 - 1 310 86319 309 chain 82411 chr12 133851895 + 21797875 21798865 LTR5_Hs 974 + 0 974 42583 60 1 0 172 0 1 160 22 0 66 0 4 407 1 0 35 5 8 61 chain 103722 chr12 133851895 + 21814281 21815665 LTR12C 1709 + 0 1709 35792 172 0 1 291 3 5 132 5 6 6 4 0 52 0 277 129 0 47 106 0 4 209 35 31 95 0 33 29 32 0 84 chain 95402 chr12 133851895 + 21826167 21827551 LTR12C 1709 - 0 1709 37984 82 1 0 85 0 102 212 11 4 67 0 1 38 8 165 105 0 118 257 46 13 40 18 6 132 32 33 51 1 2 112 48 46 38 chain 27619 chr12 133851895 + 21857436 21857799 L1PB3 3668 - 658 1027 94295 4 0 1 17 2 0 93 0 2 7 0 3 35 0 3 180 1 0 24 chain 3791 chr12 133851895 + 21858036 21858083 L1ME1 1623 - 763 810 210514 47 chain 5912 chr12 133851895 + 21876854 21876943 Tigger1 2417 + 160 251 186077 31 1 4 32 2 1 23 chain 82996 chr12 133851895 + 21885915 21887129 L1PA13 3608 - 120 1345 42338 19 3 2 19 2 0 5 2 0 35 34 31 19 1 0 8 15 14 63 2 0 39 1 5 66 4 3 28 1 0 174 0 21 197 2 0 58 0 1 126 0 1 99 3 5 29 1 0 6 0 1 4 11 13 91 4 0 43 chain 48255 chr12 133851895 + 21898958 21899548 L1PA6 6164 - 4524 5113 60214 283 8 7 299 chain 374753 chr12 133851895 + 21899548 21903957 L1PA6 6164 + 1640 6161 10931 384 11 96 58 1 0 128 0 2 281 0 5 595 0 1 134 1 10 93 2 0 42 0 1 29 0 1 197 5 0 316 1 0 353 0 1 285 0 5 365 0 6 710 0 1 94 1 2 202 0 3 121 chain 68180 chr12 133851895 + 21935557 21936355 L1PA7 6471 - 10 807 49171 76 1 0 30 2 0 33 4 5 382 0 1 270 chain 531310 chr12 133851895 + 21942502 21948946 L1PA7 6471 - 3 6471 4041 9 0 4 37 19 20 76 1 2 519 0 4 95 0 2 86 1 0 405 0 1 97 0 2 119 8 5 4 1 0 915 0 1 263 0 1 236 0 1 11 0 4 52 1 0 598 6 10 124 4 0 70 2 1 59 1 4 456 1 7 158 2 1 373 0 1 31 0 3 157 4 0 249 0 1 125 1 2 198 4 5 453 2 0 20 1 0 177 0 1 213 chain 38824 chr12 133851895 + 21951175 21951593 L1PA2 6032 - 580 998 70983 418 chain 55297 chr12 133851895 + 21951593 21952191 L1PA2 6032 + 5431 6029 55521 598 chain 29630 chr12 133851895 + 21963312 21963678 THE1C 375 - 7 375 86122 53 0 1 128 1 2 184 chain 49162 chr12 133851895 + 21965225 21965791 L1PA7 6471 + 5902 6468 59626 566 chain 17594 chr12 133851895 + 21970846 21971062 L1PA8A 6298 - 8 225 134016 104 0 1 112 chain 54276 chr12 133851895 + 21977254 21977962 L1P3 4156 - 21 687 56177 19 1 0 9 2 0 555 44 5 78 chain 66049 chr12 133851895 + 21977962 21978737 L1PA7 6471 + 5695 6468 50074 764 2 0 9 chain 19200 chr12 133851895 + 22036209 22036511 THE1B 368 + 65 368 129527 41 21 18 47 1 0 26 1 4 8 1 5 16 1 0 10 1 0 128 chain 37669 chr12 133851895 + 22043496 22043914 L1PA4 6152 + 5733 6151 72587 418 chain 8851 chr12 133851895 + 22049039 22049133 L1PA2 6032 - 2 96 166371 94 chain 529869 chr12 133851895 + 22052269 22058357 L1PA5 6144 + 4 6143 4204 724 0 1 304 1 0 381 1 6 31 0 1 911 0 1 323 0 7 549 1 5 30 0 1 89 0 1 105 0 1 97 0 1 100 1 0 3 1 0 138 6 5 14 0 13 114 0 1 736 1 3 185 0 1 840 0 1 98 0 7 116 5 12 183 chain 16689 chr12 133851895 + 22058357 22058567 MER75 514 - 264 475 136439 144 0 1 66 chain 10788 chr12 133851895 + 22075271 22075400 L1MA2 4263 - 2136 2265 157042 129 chain 33676 chr12 133851895 + 22082773 22083154 L1PA5 6144 - 4 390 78136 251 0 4 29 0 1 101 chain 501507 chr12 133851895 + 22115141 22121288 L1PA6 6164 + 0 6155 6757 178 1 0 4 0 1 261 25 5 84 1 2 32 9 8 214 0 17 309 6 5 326 1 0 271 0 1 427 0 1 916 0 1 120 1 2 4 0 1 333 1 0 839 0 4 277 0 1 40 6 7 334 1 0 298 6 7 48 0 2 520 0 1 254 chain 4313 chr12 133851895 + 22158944 22159180 L1MA4A 3247 - 905 1107 203059 25 129 109 16 7 0 9 4 1 12 4 0 30 chain 53484 chr12 133851895 + 22162649 22163330 THE1B-int 1605 + 918 1597 56693 376 10 7 201 0 1 94 chain 29750 chr12 133851895 + 22253194 22253506 AluYb8 318 + 0 312 85652 312 chain 150983 chr12 133851895 + 22260482 22263058 L1PB1 5432 + 3140 5422 24481 70 310 11 78 1 9 424 1 0 30 12 13 301 30 39 514 0 3 152 33 50 13 8 6 68 12 18 149 0 4 6 30 20 10 0 1 5 1 0 12 1 0 4 24 18 52 17 17 44 1 0 15 2 0 6 15 6 18 17 14 6 2 0 24 1 0 20 2 1 13 1 0 3 3 0 15 chain 4895 chr12 133851895 + 22267310 22267390 LTR8 732 + 537 618 196311 28 12 13 40 chain 116002 chr12 133851895 + 22285534 22286903 L1PA7 6471 - 1 1373 32456 771 3 0 6 3 6 264 0 1 111 0 1 32 5 6 174 chain 66943 chr12 133851895 + 22286903 22287706 L1PA7 6471 + 4292 5090 49532 659 1 0 40 3 2 80 3 0 17 chain 538874 chr12 133851895 + 22289466 22295473 L1PA3long 6157 + 0 6152 3007 152 0 1 589 1 0 34 0 128 943 0 1 542 0 4 458 0 9 2437 6 10 76 1 0 768 chain 32085 chr12 133851895 + 22295525 22295894 L1PA5 6144 + 5774 6144 80716 220 0 1 149 chain 510799 chr12 133851895 + 22299121 22305646 L1PA7 6471 + 1 6470 6084 271 6 7 5 1 0 123 1 4 498 11 16 91 15 12 98 15 14 124 36 18 173 1 0 259 0 3 42 1 0 603 0 1 275 2 0 458 0 4 52 2 13 25 61 0 108 1 2 210 0 1 431 9 5 453 0 6 90 21 15 163 0 4 261 1 0 16 1 0 146 0 1 4 1 0 105 1 0 410 0 3 45 1 0 4 0 1 24 0 2 39 0 1 572 6 5 153 chain 51102 chr12 133851895 + 22314903 22315480 L1PA5 6144 - 9 585 58249 191 2 1 384 chain 15778 chr12 133851895 + 22325755 22326001 MER30 238 - 0 237 139025 39 3 0 66 31 25 107 chain 121215 chr12 133851895 + 22330845 22332178 L1PA4 6152 + 4819 6151 30630 606 1 0 726 chain 2967 chr12 133851895 + 22391019 22391053 MLT1G3 592 + 0 34 225738 34 chain 2001 chr12 133851895 + 22391487 22391508 MLT1G3 592 + 493 514 238626 21 chain 20994 chr12 133851895 + 22421389 22421757 THE1C 375 - 25 370 123943 34 0 1 54 0 4 33 48 37 6 0 2 34 20 0 74 6 7 59 chain 207608 chr12 133851895 + 22452897 22455591 MER4-int 2692 + 11 2692 18671 25 2 0 63 1 0 4 1 0 12 6 1 4 1 0 34 0 4 138 1 0 105 0 1 396 11 12 109 0 1 940 12 7 134 1 0 51 7 8 146 0 1 37 5 4 29 5 0 10 1 0 77 4 0 121 1 5 22 0 1 161 0 1 17 chain 17174 chr12 133851895 + 22459028 22459278 MER4A1 472 + 198 472 135100 32 6 7 10 7 28 125 1 3 69 chain 3620 chr12 133851895 + 22479705 22479743 MIR 256 - 146 184 213333 38 chain 19012 chr12 133851895 + 22489591 22489926 THE1D 372 - 37 372 130086 85 61 66 49 1 5 73 14 5 52 chain 449046 chr12 133851895 + 22494749 22499833 L1PA4 6152 + 1087 6151 8787 5 3 0 144 0 1 428 1 0 8 11 9 135 0 1 829 32 14 1191 4 7 776 1 0 1263 1 0 140 0 1 112 chain 532520 chr12 133851895 + 22518558 22525008 L1PA7 6471 + 3 6469 3907 230 15 0 98 10 9 72 1 0 502 0 9 254 4 5 247 5 0 132 1 0 959 0 2 109 0 1 265 11 21 134 0 1 425 1 0 122 3 4 205 0 10 391 0 2 743 1 0 542 0 1 40 0 2 65 1 2 181 0 1 221 2 0 118 2 4 184 1 0 153 chain 34019 chr12 133851895 + 22529638 22530118 LTR12C 1709 + 0 461 77595 64 37 20 97 2 0 5 8 10 105 3 1 159 chain 8265 chr12 133851895 + 22536637 22536736 L1PA7 6471 + 5510 5613 169593 92 0 4 7 chain 13204 chr12 133851895 + 22536739 22536892 L1PA7 6471 + 5614 5770 147448 104 0 3 49 chain 2476 chr12 133851895 + 22536893 22536922 L1PA7 6471 + 5770 5799 233344 29 chain 54359 chr12 133851895 + 22536928 22537587 L1PA7 6471 + 5808 6468 56128 499 1 9 9 8 0 66 6 7 70 chain 517723 chr12 133851895 + 22553035 22559111 L1PA5 6144 + 2 6139 5399 175 0 1 168 5 1 822 9 0 222 0 9 176 22 17 1571 1 0 115 1 0 17 0 1 381 1 0 5 0 1 371 0 1 137 1 0 4 0 1 332 0 68 714 0 1 646 0 1 36 2 1 142 chain 27304 chr12 133851895 + 22574263 22574756 L1PA13 3608 + 3059 3522 95268 41 31 28 32 1 0 114 2 0 61 7 0 56 1 0 5 2 0 40 63 55 13 5 0 14 1 0 4 chain 27304 chr12 133851895 + 22580903 22581396 L1PA13 3608 + 3059 3522 95267 41 31 28 32 1 0 114 2 0 61 7 0 56 1 0 5 2 0 40 63 55 13 5 0 14 1 0 4 chain 14219 chr12 133851895 + 22586288 22586470 L1PB4 2604 + 2387 2568 143819 165 1 0 16 chain 381912 chr12 133851895 + 22590638 22595987 L1PB1 5432 + 56 5409 10701 247 1 2 4 1 0 9 0 6 82 2 1 187 40 22 8 0 22 229 1 0 333 5 7 180 1 0 8 2 0 5 22 12 66 0 1 46 4 8 432 37 10 8 0 27 276 1 0 32 0 4 95 1 0 51 36 0 8 1 34 73 0 2 248 4 3 91 0 4 324 1 2 248 1 0 216 1 3 162 0 1 217 1 0 34 0 1 208 0 2 123 13 18 128 0 56 97 6 6 18 0 1 276 1 4 10 62 20 23 1 0 10 16 11 9 2 0 53 2 1 16 1 0 19 3 4 21 1 0 15 11 0 8 1 0 22 9 6 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 44543 chr12 133851895 + 22639809 22640303 L1PA4 6152 + 4810 5304 63535 494 chain 56152 chr12 133851895 + 22640303 22640928 L1PA4 6152 + 5308 5933 55037 625 chain 17881 chr12 133851895 + 22640928 22641128 L1PA4 6152 + 5941 6141 133158 200 chain 28597 chr12 133851895 + 22661805 22662111 AluYb8 318 - 14 318 90748 186 2 0 118 chain 22961 chr12 133851895 + 22685000 22685278 AluSp 311 + 18 296 115797 278 chain 69019 chr12 133851895 + 22707395 22708408 MER11A 1151 - 0 914 48798 115 4 5 110 0 1 36 18 0 22 43 0 26 34 10 133 8 9 145 0 1 97 0 1 33 19 4 109 4 0 57 chain 23248 chr12 133851895 + 22737579 22737866 AluSc 308 - 10 297 114447 287 chain 23179 chr12 133851895 + 22740023 22740316 AluSq2 311 + 21 311 114775 156 3 0 134 chain 8646 chr12 133851895 + 22747771 22747865 L1PA2 6032 - 3 97 167498 94 chain 6128 chr12 133851895 + 22759412 22759480 L1PA7 6471 + 6240 6308 184195 68 chain 13414 chr12 133851895 + 22759480 22759632 L1PA7 6471 + 6310 6462 146658 152 chain 73180 chr12 133851895 + 22765385 22766465 MER11A 1151 - 0 1151 46932 76 5 9 85 0 1 59 53 1 17 50 68 145 5 6 139 0 7 94 0 1 149 4 0 60 0 4 52 8 0 24 10 109 45 chain 41595 chr12 133851895 + 22766513 22767034 MER41A 554 + 0 526 67160 160 1 2 233 1 5 126 chain 19343 chr12 133851895 + 22771495 22771728 MER41A 554 + 162 395 129100 233 chain 10538 chr12 133851895 + 22771731 22771862 MER41A 554 + 399 530 158106 131 chain 6850 chr12 133851895 + 22772645 22772737 MER51D 577 + 418 507 178585 6 4 0 74 0 1 8 chain 9537 chr12 133851895 + 22773913 22774059 L1MC2 1988 - 142 287 162901 43 17 16 86 chain 25099 chr12 133851895 + 22784111 22784406 AluSp 311 - 15 309 104297 168 1 0 126 chain 3580 chr12 133851895 + 22798661 22798709 L1MA4 2864 - 60 106 213973 38 2 0 8 chain 157701 chr12 133851895 + 22828947 22830842 L1PA7 6471 - 3 1898 23634 258 0 1 438 13 9 133 0 4 208 1 0 600 7 9 22 1 0 165 4 3 45 chain 4269 chr12 133851895 + 22844810 22844860 L1MC4 1079 - 952 1002 203631 50 chain 7926 chr12 133851895 + 22845661 22845858 LTR12C 1709 - 832 989 171473 40 1 0 4 80 4 34 0 37 38 chain 43569 chr12 133851895 + 22853900 22854469 LTR6B 557 - 0 557 64723 22 0 1 33 0 1 4 0 1 56 15 11 26 19 4 38 0 1 238 0 1 78 0 2 40 chain 28443 chr12 133851895 + 22866095 22866395 AluYa5 310 - 11 310 91408 64 1 0 235 chain 99398 chr12 133851895 + 22887690 22888768 L1PA2 6032 - 0 1078 36924 1078 chain 4673 chr12 133851895 + 22902915 22902994 LTR37B 484 - 401 481 198837 31 15 16 33 chain 11300 chr12 133851895 + 22956537 22956668 L1PA3long 6157 - 0 133 155059 5 0 2 126 chain 19235 chr12 133851895 + 22960437 22961506 THE1D 372 + 0 370 129423 15 0 2 44 3 24 84 785 64 107 1 0 30 chain 4802 chr12 133851895 + 22962560 22962643 MER53 195 + 1 94 197338 14 14 24 55 chain 128076 chr12 133851895 + 22973246 22974673 L1PA4 6152 - 6 1437 28551 838 0 4 589 chain 3273 chr12 133851895 + 23002168 23002237 MER58A 224 + 50 118 219548 29 21 20 19 chain 53763 chr12 133851895 + 23030686 23031462 L1PA8 5853 + 5064 5853 56499 23 1 0 15 0 3 383 1 10 28 6 13 25 1 0 45 2 0 67 4 3 11 13 14 36 2 1 11 12 11 90 chain 135120 chr12 133851895 + 23054668 23056254 L1PA5 6144 + 4590 6141 26991 38 1 0 305 0 1 1076 35 1 20 1 0 110 chain 2689 chr12 133851895 + 23070807 23070843 L1MA4 2864 + 2765 2803 230345 31 0 2 5 chain 18568 chr12 133851895 + 23103016 23103211 AluYa5 310 + 108 303 131313 195 chain 5188 chr12 133851895 + 23158405 23158656 L1ME1 1623 + 1231 1485 193163 48 172 175 31 chain 19876 chr12 133851895 + 23162560 23162792 L1PA5 6144 + 5896 6128 127566 232 chain 14454 chr12 133851895 + 23168603 23168933 L1PB1 5432 - 28 327 143035 13 1 0 21 1 0 24 2 0 12 11 8 29 13 1 15 1 0 41 32 30 42 2 0 9 27 21 24 1 0 9 chain 14663 chr12 133851895 + 23170456 23170773 L1PB 1623 + 1305 1586 142378 48 2 1 92 1 0 7 2 1 30 1 0 4 3 0 13 5 1 13 1 0 10 51 29 21 2 0 11 chain 7153 chr12 133851895 + 23179351 23179471 ERVL-int 1947 + 1734 1855 176389 29 1 0 24 4 3 18 6 9 38 chain 19282 chr12 133851895 + 23206526 23206890 THE1B 368 + 0 368 129281 8 1 0 7 2 0 4 0 1 88 8 9 59 36 33 4 0 1 14 4 12 66 30 29 33 chain 549194 chr12 133851895 + 23223570 23229586 L1PA2 6032 - 5 6030 1551 1425 0 2 3750 0 1 143 1 8 387 1 0 309 chain 11264 chr12 133851895 + 23241030 23241190 Tigger3a 397 + 65 305 155181 39 9 89 112 chain 231407 chr12 133851895 + 23241884 23244994 L1PA5 6144 - 1 3687 17236 10 4 1 132 6 5 684 8 12 5 1 0 636 1 0 946 1 6 132 413 996 93 10 0 28 chain 30558 chr12 133851895 + 23244450 23244863 L1P1 4361 + 2461 2864 37789 25 10 0 378 chain 3910 chr12 133851895 + 23244994 23245041 L1P1 4361 + 3578 3625 205092 47 chain 51942 chr12 133851895 + 23245044 23245746 L1P1 4361 + 2884 3586 37789 702 chain 21337 chr12 133851895 + 23250362 23250655 AluSg7 307 - 5 298 122730 35 5 4 111 0 3 7 7 4 6 0 1 122 chain 14203 chr12 133851895 + 23292565 23292803 THE1D 372 + 79 332 143873 25 1 0 64 0 4 6 31 32 11 6 17 94 chain 77595 chr12 133851895 + 23295934 23296903 L1PA8 5853 - 0 979 44694 89 0 7 16 2 1 61 1 0 46 0 12 12 2 0 45 1 0 467 3 0 85 3 0 5 0 1 52 0 1 79 chain 542491 chr12 133851895 + 23298780 23304936 L1PA4 6152 + 10 6152 2429 451 7 1 118 1 0 156 1 0 1580 6 0 391 3 4 506 0 1 41 1 3 1043 1 0 1841 3 0 6 chain 142553 chr12 133851895 + 23309044 23310683 L1PA4 6152 - 0 1645 25716 161 1 0 179 1 0 428 0 1 86 0 3 8 0 4 775 chain 35485 chr12 133851895 + 23310683 23311073 L1PA4 6152 + 4112 4502 75194 390 chain 73773 chr12 133851895 + 23348606 23349505 L1PA7 6471 - 9 925 46633 71 3 0 89 0 17 314 10 14 336 1 0 75 chain 9221 chr12 133851895 + 23367548 23367684 L1PA15 4387 - 841 976 164444 44 15 14 77 chain 322338 chr12 133851895 + 23416378 23420065 L1PA5 6144 + 2344 6132 12506 832 1 0 326 1 0 173 3 5 101 0 101 544 0 1 99 8 0 130 0 2 489 0 5 135 2 0 428 0 2 415 chain 20398 chr12 133851895 + 23431131 23431453 MER1A 529 - 49 385 125901 13 24 15 61 1 26 4 1 0 175 6 5 37 chain 98409 chr12 133851895 + 23438696 23439888 LTR12C 1709 + 0 1709 37191 289 0 20 155 3 1 166 4 1 18 0 485 89 0 4 50 0 10 102 1 0 4 0 1 232 1 0 11 0 4 67 chain 23840 chr12 133851895 + 23443207 23443494 AluY 311 + 8 291 111249 124 0 1 152 5 0 6 chain 19463 chr12 133851895 + 23454732 23455097 MSTA 426 + 0 405 128775 92 27 52 44 3 0 16 56 54 38 1 21 88 chain 9164 chr12 133851895 + 23511311 23511414 L1PA5 6144 + 6034 6137 164737 103 chain 2248 chr12 133851895 + 23520134 23520223 ORSL 269 - 147 211 236015 7 7 0 3 1 0 26 32 15 13 chain 512157 chr12 133851895 + 23541636 23548049 L1PA5 6144 + 1 6124 5956 121 0 14 573 0 1 97 17 0 221 4 43 98 9 0 654 319 0 117 5 6 210 0 1 151 13 6 786 0 1 62 1 2 5 0 1 33 1 0 1094 1 0 995 1 5 639 0 1 186 chain 29663 chr12 133851895 + 23543439 23543749 AluYa5 310 - 0 310 86016 310 chain 28087 chr12 133851895 + 23570681 23571003 L1PA3long 6157 - 0 322 92693 322 chain 95493 chr12 133851895 + 23571003 23572079 L1HS 6032 + 1664 2743 37957 602 0 3 474 chain 220666 chr12 133851895 + 23590513 23593310 L1PA8 5853 + 2989 5813 17838 119 1 16 607 0 3 183 1 0 49 0 3 300 0 1 64 2 0 30 2 0 219 0 2 402 0 4 18 0 5 66 0 2 51 0 1 430 1 0 43 3 1 62 16 15 6 1 0 48 1 0 24 1 0 22 0 3 25 chain 38256 chr12 133851895 + 23601102 23601526 L1PA4 6152 - 1552 1976 71401 424 chain 136643 chr12 133851895 + 23601526 23603089 L1PA4 6152 + 4579 6143 26703 588 1 0 10 11 8 113 0 4 223 0 1 617 chain 475325 chr12 133851895 + 23616982 23623284 L1PA8A 6298 + 28 6286 7875 6 6 0 6 1 0 16 1 0 8 3 0 9 2 0 7 5 0 18 3 0 21 1 0 4 2 0 5 7 1 20 1 0 8 4 3 10 1 0 7 1 0 12 2 0 15 2 0 4 1 0 10 4 3 8 1 0 5 41 34 39 2 1 20 8 3 17 1 2 54 2 0 14 6 4 10 1 0 8 1 0 194 0 9 450 0 4 14 42 32 137 0 3 23 0 4 44 0 1 17 7 3 62 6 5 279 0 1 94 9 10 382 0 1 149 1 0 149 1 2 246 0 4 267 8 0 331 1 0 9 1 0 39 2 1 296 1 12 76 0 1 88 0 2 20 0 3 314 0 2 605 1 0 29 0 3 326 0 3 33 2 0 18 0 1 234 0 1 16 3 1 301 13 3 304 4 6 77 5 4 101 chain 19717 chr12 133851895 + 23653607 23653877 L1PB2 3958 - 120 387 128048 62 3 2 92 6 5 60 1 0 46 chain 30535 chr12 133851895 + 23658772 23659220 LTR7 482 - 8 482 83363 41 40 41 95 0 31 151 21 15 100 chain 284872 chr12 133851895 + 23660451 23664055 HERVH-int 3825 - 0 3825 14359 114 0 1 125 3 7 133 36 37 278 0 9 492 1 6 515 0 2 5 24 29 263 13 14 15 0 1 100 1 0 209 0 1 192 10 11 40 15 0 46 7 0 334 0 3 65 1 0 52 17 223 18 8 10 91 18 19 31 2 1 175 2 1 141 0 4 12 chain 30787 chr12 133851895 + 23664065 23664506 LTR7 482 - 8 482 82885 41 15 16 50 1 2 57 0 3 6 0 34 150 21 15 100 chain 496329 chr12 133851895 + 23668587 23674202 L1PA4 6152 - 1 6142 7049 899 1 0 1136 5 6 806 0 1 4 1 0 1212 6 7 1457 0 525 88 chain 8960 chr12 133851895 + 23690712 23690836 LTR12C 1709 - 0 123 165832 77 14 13 33 chain 11533 chr12 133851895 + 23693166 23693295 L1PA3long 6157 + 6013 6142 154177 129 chain 24579 chr12 133851895 + 23711539 23711836 AluSp 311 - 15 311 107085 176 1 0 120 chain 26590 chr12 133851895 + 23788300 23788621 L1PA5 6144 + 5832 6142 97697 134 5 0 169 6 0 7 chain 64551 chr12 133851895 + 23863179 23863906 L1PA5 6144 - 3 730 50777 727 chain 21999 chr12 133851895 + 23867988 23868254 AluYk4 311 + 37 309 120237 229 0 6 37 chain 25665 chr12 133851895 + 23878150 23878515 THE1B 368 - 0 368 101427 122 23 22 10 0 4 10 1 2 29 1 0 169 chain 24551 chr12 133851895 + 23899693 23900047 THE1B 368 + 2 368 107246 42 0 1 124 1 0 20 9 6 6 0 1 12 17 31 123 chain 2539 chr12 133851895 + 23929611 23929725 MER1B 344 + 121 235 232663 11 0 2 17 60 60 12 2 0 12 chain 491028 chr12 133851895 + 23972366 23978464 L1PA7 6471 - 4 6468 7317 152 1 0 141 3 4 31 4 1 358 0 1 79 0 2 77 4 8 408 0 1 249 1 0 376 0 1 4 1 0 223 0 3 21 0 33 20 0 1 11 0 19 71 0 23 6 0 25 117 9 210 129 13 6 82 0 4 84 1 2 177 1 0 203 0 4 16 0 1 184 6 10 42 11 0 32 0 3 140 1 0 18 0 9 4 0 1 331 0 1 501 0 1 735 2 10 104 0 26 37 1 0 237 6 3 195 1 0 55 0 4 138 5 20 239 chain 23887 chr12 133851895 + 23978968 23979248 L1PA4 6152 - 9 287 110979 245 2 0 33 chain 6222 chr12 133851895 + 24011754 24011832 MER11A 1151 + 154 230 183396 45 2 0 31 chain 2619 chr12 133851895 + 24024612 24024644 ORSL 269 - 76 108 231438 32 chain 77849 chr12 133851895 + 24029104 24030083 L1PA7 6471 + 5504 6467 44593 117 1 0 164 9 8 146 10 1 9 7 0 356 3 4 51 5 6 101 chain 10031 chr12 133851895 + 24077856 24077966 SVA_E 1901 + 1787 1897 160423 110 chain 7675 chr12 133851895 + 24127180 24127285 L1MA7 2200 - 415 519 173073 66 1 0 38 chain 7059 chr12 133851895 + 24135649 24135839 MER33 330 - 83 293 177040 31 0 5 28 86 101 45 chain 7723 chr12 133851895 + 24137841 24137952 MER85 139 - 0 122 172764 30 0 10 55 5 6 21 chain 11831 chr12 133851895 + 24249058 24249198 L1PA7 6471 - 6 146 152898 140 chain 6031 chr12 133851895 + 24263985 24264094 MER20 218 - 70 182 184968 36 2 0 21 1 0 4 13 19 32 chain 22801 chr12 133851895 + 24423000 24423269 AluSg7 307 - 14 284 116573 161 0 1 108 chain 13031 chr12 133851895 + 24435156 24435300 L1PA4 6152 + 6006 6150 148120 144 chain 28093 chr12 133851895 + 24442387 24442688 AluYa5 310 - 11 310 92672 173 1 0 8 1 0 118 chain 8945 chr12 133851895 + 24460490 24460610 MER50 708 + 481 602 165896 11 2 3 107 chain 10553 chr12 133851895 + 24467147 24467261 L1PA4 6152 - 260 374 158033 114 chain 17203 chr12 133851895 + 24467261 24467460 L1PA4 6152 + 5953 6152 135030 199 chain 21554 chr12 133851895 + 24470872 24471147 AluSx 319 + 10 287 121948 133 12 14 130 chain 22430 chr12 133851895 + 24499723 24499970 L1PA5 6144 + 5895 6142 118338 247 chain 53226 chr12 133851895 + 24525069 24525745 L1PA7 6471 - 4 681 56875 6 4 0 132 0 2 40 9 8 173 4 5 111 0 3 197 chain 13304 chr12 133851895 + 24540205 24540407 MER30 238 + 0 238 147067 18 1 19 57 0 2 11 4 0 6 2 25 58 3 0 42 chain 40367 chr12 133851895 + 24541891 24542332 L1PA3long 6157 - 0 440 68782 5 1 0 435 chain 51834 chr12 133851895 + 24561729 24562381 L1PA8A 6298 + 5649 6292 57731 190 4 5 251 7 0 74 14 11 112 chain 19214 chr12 133851895 + 24579163 24579397 L1PA6 6164 + 5916 6154 129490 47 0 8 123 4 0 60 chain 103195 chr12 133851895 + 24590142 24591362 L1PA7 6471 + 5197 6457 35951 320 0 37 5 3 0 4 0 1 134 0 2 93 0 2 513 16 17 132 chain 2893 chr12 133851895 + 24610977 24611008 MER53 195 + 75 106 227133 31 chain 68875 chr12 133851895 + 24633005 24634055 L1MA2 4263 + 3074 4114 48864 86 3 2 65 1 0 9 4 8 141 0 2 180 2 0 17 6 3 74 2 1 72 13 17 17 41 38 145 16 14 93 6 0 47 1 0 9 chain 40047 chr12 133851895 + 24656438 24656917 L1PA7 6471 + 5989 6470 69252 219 0 1 104 3 0 5 0 4 148 chain 29798 chr12 133851895 + 24700112 24700424 AluYb8 318 - 6 318 85445 312 chain 152463 chr12 133851895 + 24733737 24735413 L1PA3long 6157 + 4480 6156 24288 1676 chain 7384 chr12 133851895 + 24737524 24737653 MER85 139 - 0 139 174881 23 31 41 75 chain 38206 chr12 133851895 + 24751763 24752229 L1PA7 6471 - 3 473 71829 149 1 2 7 2 0 179 1 0 121 0 6 6 chain 24999 chr12 133851895 + 24755449 24755728 AluYc 301 - 23 301 104794 156 1 0 122 chain 492931 chr12 133851895 + 24772766 24778689 L1PA6 6164 - 4 6164 7227 545 0 1 298 0 3 395 5 1 1124 0 1 95 0 1 75 0 1 350 0 4 22 0 4 50 0 1 288 0 1 426 0 211 192 13 7 392 5 6 842 0 17 291 4 6 343 30 29 138 chain 7570 chr12 133851895 + 24802812 24802911 MER82 654 + 271 369 173725 8 2 0 75 0 1 14 chain 282806 chr12 133851895 + 24804187 24807655 L1PA7 6471 - 13 5678 14485 129 0 1 425 5 6 225 5 2192 24 0 1 818 34 0 115 0 2 649 0 1 67 0 2 197 0 15 122 11 26 224 0 4 35 9 11 374 chain 53732 chr12 133851895 + 24826358 24826947 SVA_B 1603 - 2 591 56514 589 chain 171821 chr12 133851895 + 24836811 24838821 L1PA7 6471 - 6 2017 21841 6 2 0 759 0 2 77 2 1 661 7 9 496 chain 25869 chr12 133851895 + 24875639 24875989 THE1B 368 + 0 368 100572 44 0 15 115 1 0 18 4 0 114 5 13 49 chain 20450 chr12 133851895 + 24928733 24929098 THE1B 368 - 1 368 125759 48 14 13 62 58 60 67 11 12 105 chain 25517 chr12 133851895 + 24936165 24936477 L1PA8A 6298 + 5979 6288 102154 55 1 0 156 2 0 98 chain 4875 chr12 133851895 + 24958150 24958248 MER5A1 166 - 42 136 196545 32 9 10 35 9 4 13 chain 3083 chr12 133851895 + 24986604 24986726 MIRb 242 - 106 221 223270 26 62 60 17 1 0 5 4 0 7 chain 98563 chr12 133851895 + 25018911 25020241 LTR12C 1709 + 84 1708 37134 317 17 0 69 10 3 18 42 43 120 0 278 123 16 63 97 20 13 399 1 0 81 chain 3799 chr12 133851895 + 25036562 25036607 L1MA7 2200 + 1621 1666 210396 45 chain 6740 chr12 133851895 + 25042500 25042615 MER21A 919 + 25 150 179401 56 4 5 10 7 0 7 2 18 29 chain 6838 chr12 133851895 + 25045056 25045135 MER41B 635 - 556 635 178669 79 chain 37651 chr12 133851895 + 25060329 25060864 LTR7B 505 + 0 492 72620 91 0 3 100 71 0 33 9 30 5 0 3 79 0 1 147 chain 19224 chr12 133851895 + 25069516 25069762 AluSg4 309 - 54 299 129457 42 10 9 194 chain 6590 chr12 133851895 + 25070415 25070519 LTR49-int 1717 - 1167 1269 180543 76 12 10 16 chain 126198 chr12 133851895 + 25078510 25079902 SVA_C 1631 + 20 1625 29034 626 0 40 33 0 40 140 0 133 593 chain 13215 chr12 133851895 + 25081088 25081290 LTR24B 570 + 76 278 147410 17 7 8 33 0 1 51 0 1 5 0 5 17 9 1 63 chain 11598 chr12 133851895 + 25082575 25082783 MER34C2 569 + 243 448 153902 52 32 0 4 6 0 6 0 7 10 0 30 22 1 0 16 1 0 58 chain 23459 chr12 133851895 + 25110039 25110337 AluSp 311 - 15 308 113323 46 0 5 125 1 0 86 9 0 31 chain 24809 chr12 133851895 + 25115008 25115691 L1M1 2793 + 618 1200 105839 17 102 47 20 111 74 16 7 6 32 2 0 9 1 0 12 19 10 13 30 27 59 6 12 31 1 0 108 0 3 66 1 0 20 chain 8676 chr12 133851895 + 25145711 25145854 BC200 147 - 6 147 167322 8 4 0 26 7 1 30 4 12 64 chain 8719 chr12 133851895 + 25148004 25148102 SVA_E 1901 - 0 98 167097 98 chain 68165 chr12 133851895 + 25201548 25202395 L1PA11 4918 - 587 1453 49176 292 0 1 103 0 17 122 1 2 65 1 0 4 0 1 259 chain 25544 chr12 133851895 + 25202638 25202942 AluY 311 + 0 308 102024 50 0 4 254 chain 25863 chr12 133851895 + 25208397 25208723 L1PA5 6144 - 3 332 100594 17 0 1 116 12 14 181 chain 7134 chr12 133851895 + 25234020 25234114 MER44A 345 - 161 259 176522 79 0 4 15 chain 27766 chr12 133851895 + 25278497 25278977 L1PA14 3548 - 92 550 93818 41 1 0 13 12 9 15 4 2 33 4 1 11 1 0 87 24 23 44 2 0 40 1 0 6 2 0 11 10 6 109 2 0 7 chain 26085 chr12 133851895 + 25283189 25283499 AluYk4 311 + 0 310 99687 310 chain 29145 chr12 133851895 + 25292442 25292779 L1PA7 6471 + 6121 6457 88338 38 1 0 298 chain 160193 chr12 133851895 + 25292800 25295417 L1PB1 5432 + 3098 5422 23310 92 0 4 15 0 33 471 37 22 131 0 1 147 0 1 200 1 0 252 5 9 88 27 17 44 4 5 158 309 0 91 15 40 72 11 14 93 18 16 25 1 0 5 1 0 12 2 0 3 2 0 9 2 0 52 6 5 11 1 0 45 1 0 15 3 1 14 9 0 15 2 0 6 0 1 13 2 0 24 1 0 23 1 0 11 2 1 17 chain 4139 chr12 133851895 + 25302142 25302186 MADE1 96 + 2 46 205372 44 chain 35224 chr12 133851895 + 25313231 25313729 LTR10F 562 + 6 562 75894 107 3 59 18 33 5 35 0 24 12 9 15 281 chain 25885 chr12 133851895 + 25316146 25316543 LTR7 482 + 0 467 100498 69 8 46 109 8 9 16 1 0 14 1 32 12 0 1 4 1 0 107 13 14 34 chain 273210 chr12 133851895 + 25316560 25320112 HERVH-int 3825 + 0 3825 15007 56 13 16 246 15 14 32 15 16 91 1 5 9 2 0 47 57 0 9 1 0 4 0 1 24 2 1 6 1 0 27 22 114 38 24 24 55 0 2 78 0 3 405 0 2 129 0 1 19 0 1 304 0 1 10 25 26 270 10 15 329 4 7 5 3 0 580 1 3 95 8 218 46 0 4 344 1 4 89 chain 28394 chr12 133851895 + 25322039 25322442 LTR7 482 + 0 475 91604 68 9 47 109 0 1 8 0 31 101 1 2 52 13 14 42 chain 272318 chr12 133851895 + 25322450 25328026 L1PB1 5432 + 1466 5413 15061 49 839 226 74 1 0 23 19 16 8 0 3 339 0 3 292 0 1 162 0 1 112 5 6 51 1 2 8 1 0 324 0 8 363 5 0 6 0 5 19 1 13 25 6 8 867 13 18 110 16 13 189 10 8 265 8 12 8 1015 0 11 1 0 24 1 0 9 16 11 11 5 3 47 1 0 17 2 1 40 8 7 12 3 0 7 15 6 18 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 23795 chr12 133851895 + 25381717 25382009 AluSc 308 + 5 297 111500 117 0 1 7 1 0 167 chain 24697 chr12 133851895 + 25428827 25429138 AluSp 311 + 0 308 106451 57 6 3 248 chain 264240 chr12 133851895 + 25456509 25460085 L1PBa 3878 + 81 3624 15473 4 1 0 5 2 0 10 2 1 35 14 13 8 3 0 6 5 3 47 1 0 11 27 25 217 1 0 56 1 0 239 10 16 20 3 5 123 13 7 685 1 0 301 8 9 305 3 0 27 0 1 59 33 4 134 1 9 202 3 4 40 1 3 76 0 5 162 14 5 94 0 1 84 18 22 51 21 19 4 0 1 72 0 1 58 11 10 244 chain 41487 chr12 133851895 + 25460090 25460630 MLT2A2 560 + 9 560 67297 41 0 2 117 2 3 155 1 0 79 0 11 117 8 6 20 chain 425383 chr12 133851895 + 25460630 25466241 HERVL-int 5654 + 0 5654 9409 62 0 1 5 1 0 33 0 1 220 0 1 293 15 17 117 0 1 26 0 16 99 1 0 294 12 7 108 6 7 213 17 21 57 0 4 49 9 5 14 0 2 4 1 0 22 0 1 100 4 3 187 1 2 204 1 0 278 0 2 12 2 1 214 0 3 57 1 0 317 0 3 314 0 1 4 1 0 104 0 3 189 6 7 236 9 10 140 1 2 198 1 21 188 10 18 210 4 0 171 1 4 114 45 32 379 5 1 225 chain 44219 chr12 133851895 + 25466241 25466791 MLT2A2 560 + 0 560 63921 327 1 0 79 0 11 143 chain 136179 chr12 133851895 + 25466791 25468708 L1PB1 5432 + 3406 5281 26801 242 11 0 7 14 19 62 11 1 23 8 0 202 0 2 421 1 0 106 1 0 118 0 4 8 3 0 189 3 0 284 37 31 13 1 0 4 3 2 12 28 22 42 2 1 16 1 0 44 chain 24376 chr12 133851895 + 25469849 25470135 AluY 311 + 11 296 108211 122 1 0 163 chain 20589 chr12 133851895 + 25492562 25492931 THE1B 368 - 0 368 125337 34 12 0 41 1 0 15 12 8 20 1 2 33 15 17 15 19 17 102 5 20 44 chain 125593 chr12 133851895 + 25492931 25494527 THE1B-int 1605 - 1 1605 29215 647 28 7 151 8 9 117 0 3 219 0 25 426 chain 10141 chr12 133851895 + 25494562 25494688 THE1B 368 - 227 368 159895 82 0 15 44 chain 65595 chr12 133851895 + 25494770 25495607 LTR12 884 + 0 884 50297 25 1 0 53 1 42 216 1 2 43 2 0 256 0 1 115 1 9 43 1 0 79 chain 10872 chr12 133851895 + 25504890 25505045 L1P4 1494 + 1294 1443 156688 56 1 0 40 2 0 20 2 0 3 1 0 30 chain 39898 chr12 133851895 + 25505404 25505926 MLT2A2 560 - 0 541 69457 147 3 14 187 15 21 127 0 2 43 chain 106584 chr12 133851895 + 25522126 25523453 LTR12C 1709 + 2 1709 35096 177 6 13 176 20 21 248 11 0 13 0 278 110 1 0 74 1 0 4 4 2 106 0 4 168 0 102 71 0 4 54 1 0 82 chain 12158 chr12 133851895 + 25543429 25543629 MER30 238 - 0 238 151582 48 3 0 39 22 45 69 5 23 14 chain 111707 chr12 133851895 + 25544179 25545516 LTR12C 1709 + 0 1709 33751 637 11 0 13 0 278 65 0 2 117 1 0 5 3 1 106 0 4 194 0 102 185 chain 122253 chr12 133851895 + 25552884 25554452 THE1B-int 1605 + 1 1600 30295 408 18 42 812 0 9 152 0 1 145 10 7 23 chain 11990 chr12 133851895 + 25557218 25557362 U4 144 - 0 144 152243 144 chain 25689 chr12 133851895 + 25579434 25579727 AluSp 311 + 4 297 101333 293 chain 9831 chr12 133851895 + 25590155 25590308 L1PA8 5853 + 5688 5844 161440 41 0 4 7 2 1 19 1 0 34 14 15 35 chain 25256 chr12 133851895 + 25602990 25603290 THE1A-int 1579 + 1279 1579 103447 300 chain 24401 chr12 133851895 + 25603290 25603645 THE1A 353 + 0 353 108070 17 2 0 30 0 1 46 1 0 13 26 27 68 1 0 151 chain 102222 chr12 133851895 + 25617765 25618918 L1PA4 6152 - 9 1602 36210 159 1 2 717 0 439 276 chain 3562 chr12 133851895 + 25622069 25622108 MIR 256 - 121 160 214274 39 chain 10596 chr12 133851895 + 25630572 25630697 HERVL-int 5654 - 428 553 157844 125 chain 28492 chr12 133851895 + 25630770 25631147 MLT2A1 477 - 98 477 91218 41 2 0 133 0 1 24 0 1 10 5 2 21 4 0 99 0 9 38 chain 132602 chr12 133851895 + 25631147 25633074 HERVL-int 5654 - 0 1690 27501 174 15 3 26 0 5 84 286 58 75 9 4 790 2 1 157 0 1 224 0 3 85 chain 472375 chr12 133851895 + 25637439 25642587 L1PA2 6032 - 2 6031 7962 1864 1 3 584 0 872 858 0 2 929 1 2 92 0 4 819 chain 90693 chr12 133851895 + 25669650 25670636 L1PA3long 6157 + 5155 6142 39389 478 0 1 508 chain 24818 chr12 133851895 + 25672243 25672542 AluY 311 + 0 303 105779 64 1 6 63 1 0 170 chain 543028 chr12 133851895 + 25689649 25695664 L1PA3long 6157 + 0 6156 2336 153 0 1 210 0 1 203 0 4 204 0 128 3855 0 6 868 0 1 522 chain 441394 chr12 133851895 + 25711987 25717201 L1PA5 6144 - 6 6144 9015 840 12 16 660 1 0 168 5 17 327 0 891 302 0 1 108 0 1 374 0 4 60 0 1 297 0 1 366 0 1 48 1 0 486 9 0 883 7 0 118 3 15 18 1 15 120 chain 185592 chr12 133851895 + 25728636 25730744 L1PA5 6144 - 12 2127 20456 168 2 0 670 1 0 190 0 1 581 0 3 190 0 6 306 chain 16321 chr12 133851895 + 25734608 25734880 Tigger3a 397 - 31 368 137437 22 9 11 149 1 2 24 30 92 37 chain 208143 chr12 133851895 + 25751165 25754097 L1MA2 4263 + 1143 4114 18627 81 0 3 12 1 2 76 1 0 131 0 3 83 7 9 66 20 18 146 2 1 111 0 3 44 3 38 196 0 5 13 0 1 6 3 0 5 0 3 169 0 7 265 8 7 34 1 0 32 17 15 180 1 2 40 0 1 633 5 2 76 1 0 50 5 0 6 0 5 73 13 10 53 1 0 5 0 1 90 15 13 79 0 1 6 14 7 12 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25838589 HSMAR1 1287 - 0 1278 38066 196 1 0 354 4 8 172 5 9 168 17 20 10 0 5 112 17 18 206 chain 25666 chr12 133851895 + 25839776 25840191 LTR12C 1709 + 654 986 101422 183 83 0 149 chain 1893 chr12 133851895 + 25839959 25839999 LTR12C 1709 + 718 758 165410 40 chain 3534 chr12 133851895 + 25840001 25840042 LTR12C 1709 + 837 878 174156 41 chain 81495 chr12 133851895 + 25881601 25882485 L1PA3long 6157 + 5258 6142 42974 884 chain 23993 chr12 133851895 + 25890902 25891269 THE1B 368 - 12 368 110367 46 5 4 4 0 1 98 13 3 26 3 2 108 9 0 9 1 10 45 chain 18149 chr12 133851895 + 25922856 25923059 L1PA5 6144 + 5931 6135 132460 70 0 1 133 chain 13632 chr12 133851895 + 25925768 25926009 MER47A 366 - 36 272 145846 40 60 56 18 1 0 122 chain 28231 chr12 133851895 + 25952484 25952783 AluYf4 310 + 0 299 92190 299 chain 17606 chr12 133851895 + 25969230 25969454 L1PA7 6471 - 2 225 133977 8 6 0 149 0 4 31 0 1 30 chain 31385 chr12 133851895 + 26024264 26024614 L1PA4 6152 + 5801 6151 81844 350 chain 55442 chr12 133851895 + 26040118 26040865 MER4E1 777 + 0 769 55445 17 1 3 153 0 1 4 1 0 155 4 23 79 0 7 95 0 7 7 5 0 96 11 3 119 chain 12516 chr12 133851895 + 26041861 26042630 MER6 865 - 0 208 150174 59 15 19 56 571 4 36 0 2 32 chain 8957 chr12 133851895 + 26042674 26042774 L1PA3long 6157 + 6056 6156 165847 100 chain 38058 chr12 133851895 + 26044043 26044555 LTR10F 562 + 0 562 72050 48 1 0 68 0 10 37 1 57 11 14 0 130 0 1 4 1 0 132 3 2 62 chain 16508 chr12 133851895 + 26045314 26045621 HSMAR2 1300 + 1 311 136891 60 1 0 9 22 23 146 39 0 9 2 42 6 0 2 13 chain 28982 chr12 133851895 + 26104541 26104846 AluYb8 318 - 13 318 89086 305 chain 22115 chr12 133851895 + 26160932 26161214 AluY 311 + 8 294 119723 124 0 1 102 2 4 40 0 1 14 chain 4564 chr12 133851895 + 26204353 26204436 MER82 654 + 116 198 200062 19 6 7 27 3 1 28 chain 72724 chr12 133851895 + 26210078 26210910 L1PA5 6144 - 12 850 47153 90 0 3 66 0 1 663 0 2 13 chain 122401 chr12 133851895 + 26229197 26230617 L1PA6 6164 - 2 1420 30248 9 1 0 6 5 0 321 1 0 47 1 3 457 1 5 279 1 0 291 chain 105899 chr12 133851895 + 26235910 26237149 L1PA5 6144 + 4916 6138 35281 106 0 1 872 23 0 128 0 1 64 0 4 46 chain 33076 chr12 133851895 + 26237260 26238025 MER4A1 472 + 0 446 79086 13 1 0 34 3 2 32 0 1 1 317 0 192 2 1 170 chain 6149 chr12 133851895 + 26239070 26239145 MLT2B4 540 + 0 75 183995 75 chain 3188 chr12 133851895 + 26247409 26247445 MLT2B1 522 - 2 38 221179 36 chain 7715 chr12 133851895 + 26290922 26291090 MER2 342 - 6 168 172828 35 1 0 4 57 52 71 chain 30099 chr12 133851895 + 26296685 26297131 MER1A 529 + 61 524 84501 17 0 3 5 14 11 70 16 32 254 17 18 53 chain 21192 chr12 133851895 + 26318963 26319216 L1PA7 6471 + 6218 6468 123234 149 0 1 93 4 0 7 chain 140578 chr12 133851895 + 26369257 26370767 L1PA2 6032 - 752 2262 26057 1510 chain 58641 chr12 133851895 + 26370767 26371434 L1PA2 6032 + 5384 6032 53610 16 0 2 473 21 0 157 chain 65966 chr12 133851895 + 26388236 26389008 L1PA7 6471 - 1 792 50118 732 0 19 40 chain 18902 chr12 133851895 + 26389008 26389225 L1PA7 6471 + 5451 5671 129375 170 0 3 47 chain 447710 chr12 133851895 + 26409604 26415510 L1PA8A 6298 + 683 6290 8821 426 35 28 572 0 1 6 1 2 4 1 0 124 0 15 43 0 3 82 0 1 20 3 2 116 0 1 91 0 3 139 0 1 25 1 0 120 0 2 192 0 2 51 0 4 385 0 1 173 1 0 74 334 0 6 0 5 15 0 4 77 0 1 378 0 1 381 0 1 43 3 0 78 7 9 168 0 1 608 0 4 47 1 0 265 1 0 72 12 14 558 1 3 59 7 0 100 chain 4162 chr12 133851895 + 26418537 26418592 L2a 937 - 521 576 205059 55 chain 22909 chr12 133851895 + 26428213 26428488 AluSx3 311 + 22 297 116071 275 chain 456404 chr12 133851895 + 26463296 26469074 L1PA8 5853 - 0 5803 8527 93 1 0 19 2 1 51 0 1 9 1 0 71 2 0 44 1 0 34 5 8 222 0 1 172 0 1 117 2 0 6 6 7 179 1 0 434 0 1 4 16 15 130 0 25 198 0 15 105 0 8 487 8 6 175 3 1 342 3 1 385 0 4 463 3 1 117 0 6 105 0 1 35 0 1 105 1 0 725 10 19 495 0 1 9 2 0 6 1 3 80 0 4 191 66 30 13 2 0 21 chain 32693 chr12 133851895 + 26478103 26478590 MLT2A1 477 + 0 477 79698 171 3 0 34 8 21 159 3 1 5 6 0 6 6 0 15 3 5 21 12 0 27 0 4 8 chain 110831 chr12 133851895 + 26485705 26486993 L1PA5 6144 - 6 1307 33993 141 1 5 189 2 0 87 6 13 402 0 4 460 chain 7432 chr12 133851895 + 26516587 26516699 L1PA8 5853 + 5741 5847 174560 22 1 0 58 8 3 23 chain 28836 chr12 133851895 + 26627444 26627751 AluYa5 310 + 0 306 89742 132 1 0 174 chain 57256 chr12 133851895 + 26664996 26665726 MER4A 717 + 0 717 54364 53 0 1 74 22 9 574 1 0 6 chain 35556 chr12 133851895 + 26670156 26671173 L1PA15 4387 + 3699 4366 75470 4 1 0 103 8 5 18 4 0 61 2 0 42 1 0 33 6 7 49 356 33 50 1 0 26 1 0 54 59 54 20 16 15 36 1 0 7 2 0 13 5 0 27 1 0 10 chain 19327 chr12 133851895 + 26715641 26715860 L1PA5 6144 + 5926 6144 129154 70 1 0 148 chain 4643 chr12 133851895 + 26725759 26725815 LTR54B 464 + 407 463 199146 56 chain 31326 chr12 133851895 + 26744045 26744481 L1MA3 4352 + 3256 3693 81944 331 38 39 67 chain 62220 chr12 133851895 + 26777419 26778414 L1MA3 4352 + 3388 4352 51788 290 9 0 34 25 25 123 1 2 37 3 0 194 69 58 109 2 0 22 1 0 6 1 0 17 10 9 14 4 0 24 chain 25409 chr12 133851895 + 26780571 26780861 L1PA7 6471 + 6176 6466 102638 290 chain 47177 chr12 133851895 + 26792415 26792944 L1PA4 6152 - 11 540 61066 529 chain 19875 chr12 133851895 + 26797429 26797731 THE1B 368 - 61 368 127575 65 1 0 12 1 0 16 0 4 14 0 4 7 1 0 4 0 1 11 1 0 77 0 14 9 15 1 68 chain 5074 chr12 133851895 + 26802441 26802500 L1MC4 1079 - 198 257 194365 59 chain 558502 chr12 133851895 + 26822492 26828639 L1PA3long 6157 + 0 6157 454 483 1 2 817 0 1 1863 0 2 23 1 0 259 0 6 2466 0 1 234 chain 14130 chr12 133851895 + 26871039 26871198 L1PA8A 6298 - 10 169 144107 159 chain 14635 chr12 133851895 + 26872553 26872714 L1PA4 6152 - 16 177 142473 161 chain 45057 chr12 133851895 + 26905174 26905722 MER41A 554 + 0 554 62982 297 0 1 171 0 5 80 chain 174626 chr12 133851895 + 26907138 26909713 MER41-int 2638 + 85 2636 21525 18 18 9 58 29 20 23 4 1 16 3 1 17 1 0 7 4 0 36 4 0 162 1 0 5 15 13 24 0 1 160 12 1 145 26 40 141 0 6 62 6 5 151 8 7 14 0 2 36 7 9 51 0 1 20 0 5 60 4 9 141 6 3 129 2 1 171 11 9 30 9 8 14 9 0 17 0 1 223 3 1 354 6 10 23 0 1 79 chain 42491 chr12 133851895 + 26909722 26910573 MER41A 554 + 0 554 66023 185 3 17 95 0 1 143 312 0 113 chain 5669 chr12 133851895 + 26917490 26917553 L1PA7 6471 + 6399 6462 188396 63 chain 17816 chr12 133851895 + 26921157 26921356 L1HS 6032 + 5829 6028 133347 199 chain 23952 chr12 133851895 + 26925683 26926036 L1PA8 5853 - 0 346 110608 93 1 0 16 1 0 44 27 25 67 2 0 44 1 0 57 chain 3531 chr12 133851895 + 26928892 26928932 MLT2A2 560 + 520 560 214871 40 chain 463543 chr12 133851895 + 26928932 26934563 HERVL-int 5654 + 0 5654 8269 478 0 3 293 7 9 109 0 1 225 1 0 163 0 6 348 0 8 76 0 1 78 4 5 193 4 5 649 1 2 413 0 1 1034 1 2 244 2 0 474 13 12 67 0 6 184 0 1 250 0 4 48 10 0 262 chain 70003 chr12 133851895 + 26937304 26938099 SVA_D 2077 + 55 898 48394 115 0 10 27 1 0 428 0 39 224 chain 18508 chr12 133851895 + 26938136 26938356 SVA_F 1814 + 664 1116 131476 65 0 233 34 1 0 120 chain 90721 chr12 133851895 + 26938373 26939401 SVA_E 1901 + 848 1901 39383 79 3 0 31 2 1 93 0 1 4 18 45 119 0 1 679 chain 24549 chr12 133851895 + 26940855 26941154 AluSp 311 - 10 311 107259 95 8 10 196 chain 22601 chr12 133851895 + 26964271 26964637 AluYf4 310 + 10 300 117584 113 1 0 11 88 12 57 0 1 96 chain 23740 chr12 133851895 + 26988177 26988469 AluSq2 311 + 9 300 111832 124 2 1 166 chain 20986 chr12 133851895 + 27000000 27000255 AluYk4 311 + 50 299 123969 75 7 1 173 chain 76745 chr12 133851895 + 27020525 27021410 L1PA7 6471 + 5573 6459 45105 51 1 0 54 2 1 114 0 1 87 0 2 576 chain 3680 chr12 133851895 + 27022523 27022563 MER49 923 - 830 870 212224 40 chain 25257 chr12 133851895 + 27033393 27033787 L1PA8 5853 - 0 384 103437 70 15 11 12 2 1 18 2 1 46 3 1 11 1 0 53 0 2 19 8 6 38 1 0 95 chain 350053 chr12 133851895 + 27052716 27056902 L1PA7 6471 + 2273 6468 11604 428 0 3 19 3 0 377 0 4 399 1 0 44 1 5 68 4 8 826 0 1 177 1 0 323 2 0 647 1 0 12 0 3 68 0 2 627 1 0 6 4 3 136 2 0 9 chain 5246 chr12 133851895 + 27085515 27085579 MER3 215 + 10 74 192558 64 chain 20499 chr12 133851895 + 27102068 27102343 AluSq2 311 - 12 290 125633 11 2 0 160 4 5 28 0 4 70 chain 9986 chr12 133851895 + 27108906 27109067 MER30 238 + 33 238 160650 10 0 22 47 7 26 39 9 11 17 0 1 32 chain 29981 chr12 133851895 + 27144071 27144384 AluYb9 318 - 5 318 84872 313 chain 11469 chr12 133851895 + 27169357 27169506 FAM 185 + 19 167 154425 138 1 0 10 chain 48334 chr12 133851895 + 27170123 27170682 LTR19B 566 - 0 566 60216 16 0 4 79 0 1 31 3 0 61 0 4 73 0 1 296 chain 189946 chr12 133851895 + 27188383 27190492 L1PA3long 6157 - 10 2119 20055 759 0 1 752 1 0 597 chain 20300 chr12 133851895 + 27191891 27192173 AluSg 306 + 26 301 126232 208 18 13 48 2 0 6 chain 63221 chr12 133851895 + 27193450 27194156 L1PA5 6144 - 0 706 51353 706 chain 200463 chr12 133851895 + 27194156 27196485 L1P2 5180 + 1183 3526 19177 756 0 1 405 0 1 44 0 4 223 0 5 157 0 3 744 chain 6546 chr12 133851895 + 27201160 27201255 Charlie1a 1436 + 611 707 180879 48 4 5 43 chain 29581 chr12 133851895 + 27215758 27216067 AluYa5 310 - 1 310 86267 309 chain 239107 chr12 133851895 + 27224398 27227383 L1PA8 5853 - 0 2952 16823 93 1 0 19 2 1 36 25 22 74 2 0 44 1 0 43 1 0 126 5 4 382 2 0 674 6 0 250 5 1 36 6 5 137 0 2 404 5 8 13 0 1 36 0 1 41 41 22 163 0 1 61 0 1 251 chain 18152 chr12 133851895 + 27239063 27239413 THE1B 368 - 0 354 132454 14 49 48 64 1 0 12 1 0 16 35 39 8 2 0 127 0 5 21 chain 177113 chr12 133851895 + 27244743 27246729 L1P1 4361 + 1127 3114 21240 244 0 1 467 0 1 100 1 0 1174 chain 5344 chr12 133851895 + 27249205 27249296 MLT1C 463 - 373 463 191604 58 11 10 22 chain 39487 chr12 133851895 + 27253121 27253705 MER4B 649 + 0 633 70037 21 0 9 127 0 42 10 3 5 5 2 0 34 0 2 110 18 15 38 11 12 134 1 0 53 1 0 16 chain 519233 chr12 133851895 + 27267165 27273368 L1PA6 6164 - 4 6164 5238 6 3 0 150 0 1 581 0 3 99 1 5 90 0 1 545 1 0 36 1 0 249 2 1 27 0 4 393 1 2 717 8 1 57 13 15 549 0 5 298 1 0 439 0 1 432 69 7 309 0 10 552 6 8 102 10 7 86 4 5 337 1 2 28 chain 8727 chr12 133851895 + 27276823 27276950 MER85 139 + 0 139 167052 96 10 22 21 chain 37393 chr12 133851895 + 27288329 27288982 L1MA2 4263 + 3563 4165 72964 21 5 1 77 1 0 147 3 0 143 35 33 73 16 9 39 1 0 8 68 35 16 chain 238696 chr12 133851895 + 27289759 27292438 L1PA4 6152 - 9 2699 16841 163 1 2 220 0 3 453 0 3 526 1 0 132 2 6 655 0 1 526 chain 137321 chr12 133851895 + 27311589 27313575 L1PA16 3655 + 1576 3578 26585 217 0 2 101 4 3 23 0 1 35 0 7 41 0 2 21 2 0 24 0 3 177 1 0 271 5 8 46 45 50 30 10 9 28 14 13 28 1 4 96 1 0 87 7 9 5 1 0 65 1 3 55 0 1 38 10 11 60 6 0 50 2 1 90 12 10 114 5 6 157 chain 531191 chr12 133851895 + 27318766 27325269 L1PA7 6471 - 7 6471 4057 842 2 0 106 3 5 140 14 8 403 7 5 286 0 4 179 0 1 273 0 2 320 1 4 5 3 0 267 0 1 57 3 7 449 0 4 107 0 1 37 1 0 180 0 6 123 57 1 235 5 6 37 0 1 573 0 1 798 1 2 582 1 0 406 chain 18845 chr12 133851895 + 27325333 27325584 MER65C 458 + 24 295 130530 34 5 21 101 0 4 111 chain 2825 chr12 133851895 + 27328854 27328950 LTR33 499 + 410 492 228302 22 52 38 22 chain 4720 chr12 133851895 + 27363093 27363252 L1MA5A 2387 - 13 155 198279 15 2 0 16 82 67 44 chain 35469 chr12 133851895 + 27383484 27383928 MER41A 554 - 96 554 75597 49 0 4 61 0 1 109 12 21 213 chain 68042 chr12 133851895 + 27384252 27385108 MER41-int 2638 - 2 859 49229 255 10 12 32 0 1 108 1 3 126 1 0 4 0 1 183 2 0 36 2 0 96 chain 15819 chr12 133851895 + 27385786 27386241 L1MA2 4263 - 43 360 138900 14 5 3 15 200 74 9 1 0 47 7 0 93 9 7 55 chain 127811 chr12 133851895 + 27421071 27422514 L1PA4 6152 - 20 1461 28614 128 2 1 982 1 0 330 chain 29569 chr12 133851895 + 27434007 27434317 AluYa5 310 - 0 310 86334 310 chain 25771 chr12 133851895 + 27465903 27466199 AluYk4 311 + 4 299 101009 260 2 1 34 chain 72042 chr12 133851895 + 27493424 27494441 L1PA13 3608 - 125 1119 47463 13 5 4 18 17 12 40 9 5 57 1 0 49 6 3 8 2 0 45 0 1 100 1 0 231 0 1 137 8 0 270 chain 26386 chr12 133851895 + 27509704 27510211 L1PB1 5432 - 5 480 98465 4 1 0 5 1 0 14 1 0 12 1 0 22 8 7 17 2 0 14 1 0 5 3 1 18 13 6 6 3 0 14 2 1 37 8 7 15 3 2 52 2 0 10 6 2 10 1 0 8 1 0 19 9 3 8 0 5 151 chain 91967 chr12 133851895 + 27510211 27511425 L1PB1 5432 + 3728 4919 38979 180 0 1 100 2 0 176 4 9 115 0 1 150 38 0 156 8 14 262 1 0 5 1 6 16 chain 13522 chr12 133851895 + 27531863 27532059 MER30 238 - 0 237 146275 48 3 0 64 0 26 61 8 26 12 chain 542254 chr12 133851895 + 27557550 27563680 L1PA4 6152 + 2 6143 2463 240 0 4 10 2 1 890 0 5 84 1 0 105 0 1 543 1 0 161 6 8 1352 0 1 1648 0 1 1087 chain 5052 chr12 133851895 + 27567014 27567097 L1M1 2793 + 2612 2695 194608 16 1 0 26 0 3 16 2 1 11 1 0 10 chain 4929 chr12 133851895 + 27569113 27569275 MIR 256 + 93 256 195942 23 86 87 53 chain 13443 chr12 133851895 + 27599141 27599418 MLT1A 405 - 161 405 146541 25 42 17 18 9 0 45 6 5 104 8 11 4 1 0 15 chain 31184 chr12 133851895 + 27607511 27607871 L1PA7 6471 - 2 362 82190 360 chain 9857 chr12 133851895 + 27614007 27614138 MER2 342 - 76 209 161303 50 2 0 64 0 4 15 chain 23066 chr12 133851895 + 27647457 27647734 L1PA7 6471 - 17 294 115324 277 chain 28841 chr12 133851895 + 27654067 27654370 AluYk12 309 + 0 303 89719 303 chain 13872 chr12 133851895 + 27658841 27659106 MER89 557 - 0 320 145001 12 7 11 39 26 32 64 8 10 11 10 54 11 1 0 76 chain 5063 chr12 133851895 + 27664917 27664996 MLT1B 390 + 27 115 194511 27 6 14 41 0 1 5 chain 3553 chr12 133851895 + 27695348 27695387 MADE1 96 + 2 41 214492 39 chain 90794 chr12 133851895 + 27697259 27698326 L1PA7 6471 + 5395 6470 39357 226 1 0 223 0 8 304 0 1 153 1 0 141 0 1 18 chain 23676 chr12 133851895 + 27751088 27751452 THE1B 368 - 0 367 112175 49 20 19 60 1 0 8 1 0 18 1 5 9 1 0 31 1 0 59 3 2 68 0 5 34 chain 10450 chr12 133851895 + 27779932 27780121 L1MA3 4352 - 30 215 158489 5 1 0 29 8 6 24 2 0 19 7 3 25 0 5 14 1 0 4 0 1 50 chain 20799 chr12 133851895 + 27794607 27794878 LTR17 781 + 56 326 124603 100 1 0 22 4 3 54 0 1 90 chain 3143 chr12 133851895 + 27795975 27796009 tRNA-Ile-ATT 40 + 0 34 222122 34 chain 37736 chr12 133851895 + 27801079 27801648 L1MA2 4263 + 3563 4114 72505 21 5 1 77 1 0 144 3 0 146 35 33 73 16 9 39 1 0 8 chain 5154 chr12 133851895 + 27843310 27843369 tRNA-Lys-AAA 73 + 5 64 193515 59 chain 4225 chr12 133851895 + 27859591 27859645 L1MA3 4352 + 4228 4280 204224 32 2 0 20 chain 28690 chr12 133851895 + 27872321 27872624 AluYb8 318 + 4 307 90372 303 chain 41903 chr12 133851895 + 27898514 27898993 L1PA4 6152 - 11 494 66753 140 0 4 339 chain 19228 chr12 133851895 + 27920393 27920629 AluSp 311 + 39 281 129438 173 5 11 58 chain 19817 chr12 133851895 + 27959081 27959323 7SK 245 - 3 245 127756 242 chain 4566 chr12 133851895 + 27969812 27969867 MER63B 433 + 312 367 200047 55 chain 46039 chr12 133851895 + 27972601 27973161 LTR19B 566 - 0 560 62006 49 3 0 20 1 3 197 0 1 290 chain 41725 chr12 133851895 + 28001430 28001946 MLT2A2 560 + 0 528 66993 90 0 2 113 0 1 88 0 2 5 0 8 22 1 0 197 chain 166149 chr12 133851895 + 28001977 28004144 L1PA10 4194 - 1518 3688 22500 40 6 7 108 1 2 17 1 2 274 0 4 11 16 0 186 6 10 142 0 3 165 3 5 237 8 9 292 1 0 485 0 1 124 0 1 20 1 2 23 chain 23881 chr12 133851895 + 28004384 28004785 LTR32 486 + 15 456 111017 68 16 9 62 21 25 122 0 35 34 1 2 25 28 35 24 chain 138062 chr12 133851895 + 28026244 28027799 SVA_D 2077 + 0 2077 26475 27 0 12 19 1 3 829 0 269 28 0 1 30 4 232 279 0 10 338 chain 14495 chr12 133851895 + 28044813 28045057 MER30 238 + 0 235 142900 43 0 1 76 0 19 13 39 13 33 3 0 37 chain 4435 chr12 133851895 + 28052752 28052804 L1PA17 2846 + 2642 2693 201524 7 1 0 44 chain 26157 chr12 133851895 + 28095715 28096005 L1PA2 6032 - 0 290 99377 290 chain 8975 chr12 133851895 + 28136447 28136643 L1PB2 3958 + 3645 3837 165744 36 1 0 74 68 65 17 chain 463326 chr12 133851895 + 28155931 28161106 L1PA3long 6157 - 1 6157 8283 63 5 1 438 18 0 2477 1 0 486 0 1 371 1 0 1218 0 1004 97 chain 5201 chr12 133851895 + 28165355 28165457 MER45A 178 - 63 178 193014 46 29 42 27 chain 8892 chr12 133851895 + 28195202 28195321 L1PREC2 3366 - 516 633 166174 7 0 1 36 1 0 55 2 0 18 chain 54688 chr12 133851895 + 28196590 28197268 L1PA8 5853 - 0 671 55914 91 3 2 19 2 1 50 2 1 7 1 0 73 2 0 45 1 0 382 chain 73855 chr12 133851895 + 28254743 28255556 L1PA3long 6157 + 5345 6157 46587 45 1 0 767 chain 4648 chr12 133851895 + 28283458 28283518 MIR 256 - 92 152 199080 60 chain 21404 chr12 133851895 + 28298823 28299124 THE1B 368 + 0 306 122493 75 0 1 93 1 0 21 0 4 6 1 0 10 0 4 16 1 0 12 2 1 63 chain 50741 chr12 133851895 + 28304494 28305055 L1PA5 6144 - 12 573 58470 561 chain 24649 chr12 133851895 + 28347261 28347561 LTR12_ 688 - 0 300 106725 300 chain 49127 chr12 133851895 + 28347583 28348375 LTR12D 1347 - 249 944 59653 15 1 0 31 4 3 17 116 0 10 4 0 259 0 1 51 0 18 21 25 0 82 1 0 23 0 31 41 0 1 91 chain 151271 chr12 133851895 + 28353234 28354936 SVA_D 2077 - 16 2001 24434 322 0 10 514 0 2 16 21 22 10 0 269 91 0 1 728 chain 173713 chr12 133851895 + 28358814 28361405 MER57-int 2662 - 2 2622 21622 27 1 0 8 3 0 29 12 7 6 1 0 17 11 8 9 1 0 6 2 0 14 0 10 13 14 2 19 0 1 12 5 0 36 22 16 6 1 0 4 0 1 76 2 0 3 1 0 20 0 4 14 70 71 150 2 3 159 3 4 6 0 1 33 10 12 10 8 7 62 14 5 188 0 15 123 2 3 4 1 0 33 2 0 282 0 7 21 1 3 39 0 1 85 0 4 83 5 13 186 0 21 302 0 1 28 0 15 132 3 6 66 1 0 9 55 41 18 chain 183041 chr12 133851895 + 28425784 28427841 L1PA4 6152 - 11 2068 20679 2057 chain 106333 chr12 133851895 + 28427841 28429025 L1PA4 6152 + 2926 4109 35174 430 1 0 753 chain 38790 chr12 133851895 + 28442924 28443575 L1PA13 3608 - 2210 2863 71028 24 1 0 57 22 24 125 1 8 21 88 86 24 7 6 230 3 0 48 chain 13941 chr12 133851895 + 28447222 28447515 THE1D 372 + 8 307 144786 83 17 16 4 1 0 11 8 12 11 60 64 98 chain 15260 chr12 133851895 + 28472420 28472613 MER2 342 - 6 199 140603 193 chain 23261 chr12 133851895 + 28479336 28479593 L1PA3long 6157 - 1 258 114383 257 chain 91318 chr12 133851895 + 28482554 28483615 L1PA6 6164 - 2 1067 39190 151 0 1 700 0 3 210 chain 8747 chr12 133851895 + 28485663 28485884 MER82 654 + 152 377 166931 25 24 29 70 66 65 36 chain 2515 chr12 133851895 + 28493435 28493480 MLT1D 503 - 205 252 232941 22 6 8 17 chain 22004 chr12 133851895 + 28514116 28514355 L1PA3long 6157 - 0 239 120212 239 chain 22572 chr12 133851895 + 28516534 28516796 AluY 311 + 0 269 117706 63 0 6 57 0 1 142 chain 2605 chr12 133851895 + 28520352 28520553 L1MDa 1598 + 685 886 231639 17 3 6 5 3 0 19 129 130 20 1 0 4 chain 94181 chr12 133851895 + 28532121 28533268 L1PA6 6164 + 5040 6162 38305 97 0 1 177 11 5 172 0 4 266 27 6 77 0 1 310 4 0 6 chain 52758 chr12 133851895 + 28540336 28541177 L1PB1 5432 - 5 818 57157 5 2 0 10 1 0 8 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 28 11 0 3 1 0 15 1 0 45 6 5 9 3 2 47 7 5 9 5 1 12 1 0 8 1 0 24 1 0 6 8 7 82 7 9 208 0 8 40 0 1 39 1 0 19 0 1 68 3 0 12 chain 33420 chr12 133851895 + 28541178 28541603 L1PB 1623 + 1023 1453 78533 38 0 2 335 0 4 44 1 0 7 chain 38275 chr12 133851895 + 28560913 28561393 L1PA8 5853 - 0 473 71745 93 1 0 18 1 0 54 4 3 6 1 0 69 2 0 46 1 0 184 chain 8246 chr12 133851895 + 28564714 28564830 Tigger3 1187 + 266 387 169707 19 0 2 22 0 1 25 0 3 5 2 1 43 chain 4238 chr12 133851895 + 28608764 28608819 MIR 256 - 79 133 204043 45 1 0 9 chain 13968 chr12 133851895 + 28627717 28627877 L1P1 4361 + 2744 2904 144683 160 chain 297137 chr12 133851895 + 28629095 28632562 L1PA5 6144 + 2669 6144 13575 218 0 4 589 3 0 125 0 2 76 0 1 190 0 1 109 0 3 167 0 4 323 0 2 1417 1 0 81 1 6 4 5 0 147 5 0 6 chain 4936 chr12 133851895 + 28639167 28639224 L1MB1 2102 - 99 156 195862 57 chain 171072 chr12 133851895 + 28652297 28655092 L1PA7 6471 - 7 2954 21926 141 0 8 7 8 1 103 0 11 568 0 1 270 752 890 537 0 1 409 chain 174952 chr12 133851895 + 28655092 28657028 L1PA3long 6157 + 4222 6151 21467 1078 1 0 842 6 0 9 chain 8228 chr12 133851895 + 28658326 28658416 5S 121 + 0 90 169788 90 chain 58188 chr12 133851895 + 28670629 28672221 L1PB1 5432 - 47 1695 11371 15 1 0 24 2 0 14 1 0 5 2 0 30 14 1 15 1 0 45 21 19 45 20 14 9 5 0 8 0 3 21 20 18 29 18 19 53 6 7 147 45 48 139 20 0 27 4 0 8 7 8 480 0 108 56 10 8 225 chain 384128 chr12 133851895 + 28672504 28676867 L1PA5 6144 - 0 4362 10640 369 3 0 175 0 2 1922 1 2 385 1 0 1267 1 0 4 0 1 235 chain 14327 chr12 133851895 + 28676881 28677041 L1PA5 6144 + 1625 1785 143469 160 chain 124820 chr12 133851895 + 28677046 28680461 L1PB1 5432 - 1947 5395 11371 242 0 22 101 2 1 17 1 3 201 13 14 65 0 1 72 8 9 245 1 0 4 16 12 222 1 2 387 1 0 71 6 13 87 0 2 129 0 2 164 1 0 146 4 0 119 0 1 777 0 3 26 1 2 71 5 6 209 chain 3916 chr12 133851895 + 28683772 28683838 MSTD 398 + 0 67 208603 23 10 11 33 chain 128848 chr12 133851895 + 28691058 28692506 L1PA4 6152 - 18 1467 28347 1056 0 1 392 chain 15609 chr12 133851895 + 28696297 28696496 MER107 203 - 0 201 139557 32 1 4 161 1 0 4 chain 21478 chr12 133851895 + 28719037 28719395 THE1B 368 - 0 368 122227 45 17 13 7 0 4 55 24 30 14 7 10 14 0 1 6 2 0 99 4 6 64 chain 36449 chr12 133851895 + 28775777 28776436 L1PB1 5432 + 4792 5418 74295 311 13 11 24 1 0 8 1 0 12 5 1 9 2 0 9 0 3 36 22 20 44 1 0 16 3 0 6 1 0 12 58 44 12 1 0 15 0 1 5 1 0 13 1 0 6 3 0 8 chain 212010 chr12 133851895 + 28790703 28793080 L1PA5 6144 + 3388 6138 18363 2088 0 374 41 1 0 247 chain 167813 chr12 133851895 + 28795932 28798526 L1PA10 4194 - 33 4019 22304 11 1 0 7 0 1 26 3 0 35 3 0 39 0 1 87 8 10 177 0 1 4 2 1 134 1 0 55 0 1 200 18 17 54 5 3 24 30 29 114 8 0 26 1 1312 32 1 0 59 41 181 56 2 1 405 0 3 81 0 2 59 2 1 26 2 0 70 13 14 272 0 1 45 2 0 80 5 1 8 4 0 13 10 0 11 1 0 8 0 3 6 1 0 8 13 11 22 1 0 4 34 27 10 3 1 16 20 18 5 2 0 10 10 6 10 2 0 5 3 0 13 2 0 13 chain 115179 chr12 133851895 + 28807459 28809010 L1PA8A 6298 - 7 1563 32719 124 4 0 15 0 1 658 1 4 48 0 1 245 0 1 4 3 2 91 1 2 20 7 8 167 4 5 32 31 32 96 chain 389129 chr12 133851895 + 28825945 28830347 L1PA4 6152 - 21 4442 10479 233 1 0 1842 0 1 884 1 13 29 0 6 126 7 0 622 1 8 631 0 1 25 chain 92809 chr12 133851895 + 28848408 28849433 L1PA3long 6157 - 0 1025 38708 1025 chain 5431 chr12 133851895 + 28859668 28859727 AluJr 308 + 20 79 190693 59 chain 51694 chr12 133851895 + 28869462 28870085 L1PA7 6471 + 5796 6421 57820 340 0 1 88 0 2 6 3 1 154 0 1 32 chain 58286 chr12 133851895 + 28887730 28888684 L1PB1 5432 + 4471 5427 53818 37 0 2 104 17 16 67 6 8 166 1 6 226 1 2 9 8 1 19 1 0 13 1 0 9 2 0 3 2 0 57 22 20 45 1 0 7 32 20 19 2 0 5 1 0 14 2 0 18 0 29 11 1 0 18 2 0 5 chain 57485 chr12 133851895 + 28889433 28890097 L1PA7 6471 - 6 668 54249 6 2 0 656 chain 25659 chr12 133851895 + 28897034 28897406 THE1C 375 + 0 375 101454 185 48 13 11 1 40 101 1 0 25 chain 81618 chr12 133851895 + 28904928 28905854 L1PA3long 6157 - 0 929 42920 338 0 1 359 1 2 149 0 1 79 chain 528565 chr12 133851895 + 28913163 28918987 L1PA2 6032 + 2 6030 4349 168 0 1 720 0 136 1238 2 1 2350 0 65 707 0 2 305 0 1 334 chain 41122 chr12 133851895 + 28941104 28941850 L1MA3 4352 + 3589 4328 67746 95 23 22 199 14 41 116 102 78 89 5 1 28 2 0 23 2 1 6 1 0 22 5 4 14 chain 2856 chr12 133851895 + 28944565 28944595 MLT2B4 540 + 510 540 227758 30 chain 39682 chr12 133851895 + 28988757 28989210 L1PA5 6144 - 12 464 69782 247 1 0 205 chain 79473 chr12 133851895 + 28989210 28990101 L1PA5 6144 + 4788 5680 43840 730 0 1 161 chain 6314 chr12 133851895 + 29012689 29012770 MER34D 576 - 40 120 182684 5 1 0 75 chain 7558 chr12 133851895 + 29031800 29031896 MER70C 520 - 59 155 173820 96 chain 6637 chr12 133851895 + 29041972 29042261 MLT1E1A 663 - 364 663 180193 24 151 164 15 15 11 31 10 11 43 chain 3925 chr12 133851895 + 29043563 29043607 MADE1 96 - 52 96 208485 44 chain 38243 chr12 133851895 + 29043607 29044119 L1MA2 4263 - 685 1179 71780 190 21 0 64 0 3 237 chain 21349 chr12 133851895 + 29050230 29050576 THE1B 368 + 0 368 122690 40 0 15 20 2 0 97 1 0 26 49 59 111 chain 19286 chr12 133851895 + 29072715 29073102 THE1D 372 - 0 372 129271 147 1 0 25 11 9 10 11 15 27 4 0 7 57 63 16 18 0 53 chain 143298 chr12 133851895 + 29075844 29077668 L1PBa 3878 + 1730 3548 25598 252 12 4 73 0 4 462 2 3 178 2 0 3 2 0 29 8 9 243 0 2 65 3 1 151 0 2 16 3 1 320 chain 26676 chr12 133851895 + 29079584 29079919 THE1A 353 + 0 333 97404 111 1 0 190 1 0 32 chain 29200 chr12 133851895 + 29097961 29098434 L1PA13 3608 - 120 573 88054 22 2 0 18 9 5 47 2 0 5 1 0 15 6 1 40 1 0 62 2 0 37 11 12 16 1 0 48 1 0 24 6 4 97 chain 30191 chr12 133851895 + 29117613 29118049 MLT2A1 477 - 0 476 84224 37 21 55 13 6 13 155 8 9 16 0 1 8 4 1 168 chain 15764 chr12 133851895 + 29154123 29154311 L1PA8 5853 - 243 430 139074 46 1 0 141 chain 10408 chr12 133851895 + 29154311 29154526 L1PA8 5853 + 5630 5836 158650 21 29 0 19 14 27 39 6 5 19 2 1 51 1 10 14 chain 66095 chr12 133851895 + 29169946 29170672 L1PA2 6032 - 2 729 50057 675 1 2 50 chain 47032 chr12 133851895 + 29170676 29171204 L1PA2 6032 + 4794 5320 61178 95 1 0 124 1 0 307 chain 2826 chr12 133851895 + 29205780 29205922 L1ME1 1623 + 1324 1467 228281 32 92 93 18 chain 33357 chr12 133851895 + 29229845 29230270 L1PA7 6471 + 6000 6420 78640 131 0 1 176 7 6 11 5 0 95 chain 4716 chr12 133851895 + 29237375 29237427 L1MB3 1562 + 1067 1119 198325 52 chain 496111 chr12 133851895 + 29245312 29251251 L1PA6 6164 + 0 6160 7062 63 1 2 112 1 2 284 5 4 33 11 10 164 0 1 116 4 21 211 6 5 23 0 1 422 0 4 339 2 3 271 0 74 10 0 118 40 0 1 862 0 1 939 0 1 354 0 9 815 0 1 340 4 0 498 3 0 6 chain 22209 chr12 133851895 + 29251942 29252202 AluY 311 + 28 287 119307 103 1 0 156 chain 84897 chr12 133851895 + 29260641 29261653 L1PA6 6164 - 15 1030 41554 113 0 2 147 1 2 58 0 1 511 1 0 181 chain 44182 chr12 133851895 + 29269041 29269646 PABL_A 660 - 25 660 63969 154 0 7 115 0 1 4 11 10 31 15 3 125 0 23 9 2 1 62 0 9 26 0 4 51 chain 14504 chr12 133851895 + 29270167 29270470 Tigger3a 397 + 39 367 142881 32 28 87 134 30 0 35 31 27 13 chain 5359 chr12 133851895 + 29273723 29273800 MADE1 96 + 0 90 191447 8 2 0 29 0 15 38 chain 28795 chr12 133851895 + 29280250 29280552 AluYg6 310 + 0 302 89922 302 chain 2342 chr12 133851895 + 29281376 29281587 MER21C 908 + 26 119 234886 14 136 9 17 23 32 21 chain 30829 chr12 133851895 + 29287552 29287989 LTR7 482 - 9 482 82812 40 12 14 95 0 10 34 1 31 134 21 15 100 chain 296492 chr12 133851895 + 29289402 29293284 HERVH-int 3825 - 0 3825 13618 403 13 14 319 0 3 297 20 1 769 0 1 4 1 0 4 0 4 227 1 5 304 1 0 40 10 0 186 34 19 305 1 0 20 0 1 119 58 0 36 31 92 19 0 29 24 12 10 37 2 1 27 59 0 20 10 12 93 15 16 30 2 1 31 0 2 18 0 2 280 chain 32320 chr12 133851895 + 29293300 29293734 LTR7 482 - 13 482 80331 143 0 10 4 1 0 4 0 1 13 0 31 148 18 11 5 0 1 98 chain 50673 chr12 133851895 + 29321454 29322098 LTR12 884 - 0 884 58518 128 0 8 20 0 103 249 2 0 35 0 133 57 1 0 126 1 0 25 chain 244238 chr12 133851895 + 29323779 29328124 HERV9-int 5642 - 818 5642 16543 188 0 1795 171 0 38 167 1024 0 160 0 1 279 0 3 915 10 0 316 1 0 73 1 5 91 11 6 7 9 0 146 313 0 463 chain 54579 chr12 133851895 + 29328152 29328862 LTR12 884 - 0 884 55980 128 0 8 97 0 103 172 2 0 38 2 3 52 1 0 126 0 66 66 1 0 25 chain 18515 chr12 133851895 + 29335055 29335476 LTR12 884 - 269 540 131455 131 3 4 99 153 3 13 1 0 21 chain 8263 chr12 133851895 + 29335299 29335430 LTR12 884 - 693 824 137719 131 chain 3784 chr12 133851895 + 29335496 29335556 LTR12 884 - 824 884 137719 60 chain 18411 chr12 133851895 + 29380861 29381072 L1PA5 6144 + 5931 6141 131743 67 1 0 143 chain 19780 chr12 133851895 + 29389322 29389693 THE1D 372 - 3 362 127870 123 3 9 16 58 56 62 9 10 18 17 0 65 chain 81331 chr12 133851895 + 29401212 29402258 MER11C 1089 - 34 1089 43031 135 1 0 55 1 2 88 9 1 36 0 1 38 6 9 20 0 1 284 1 0 64 0 4 61 0 9 247 chain 119002 chr12 133851895 + 29409395 29410823 LTR12C 1709 + 2 1709 31409 301 7 8 17 0 3 7 3 0 312 0 278 184 1 0 4 4 2 105 1 5 399 1 0 82 chain 78672 chr12 133851895 + 29421651 29422696 MER11C 1089 - 29 1089 44202 140 1 0 54 0 1 127 0 1 34 2 1 8 0 4 20 0 1 91 48 46 146 1 0 65 0 4 62 0 9 246 chain 43950 chr12 133851895 + 29426989 29427485 L1PA4 6152 - 0 508 64263 6 0 5 28 0 7 462 chain 28504 chr12 133851895 + 29427485 29427888 LTR7 482 + 0 482 91171 54 23 61 109 6 7 33 0 31 19 0 10 37 1 0 121 chain 7921 chr12 133851895 + 29427890 29427983 HERVH-int 3825 + 0 96 171520 34 0 1 14 0 2 45 chain 26805 chr12 133851895 + 29427999 29428399 LTR7 482 - 0 482 96958 49 16 18 91 7 17 12 1 32 38 0 1 109 8 46 69 chain 62965 chr12 133851895 + 29441864 29442773 L1MA1 4479 + 3274 4157 51464 42 5 0 72 4 1 59 3 0 70 3 0 50 9 8 138 1 0 20 0 1 4 1 0 16 1 0 48 0 2 21 1 0 14 2 0 19 1 0 87 1 0 6 3 0 122 5 4 30 10 8 26 1 0 9 0 1 5 chain 29921 chr12 133851895 + 29448689 29449000 AluYb8 318 - 7 318 85041 311 chain 23631 chr12 133851895 + 29454895 29455194 AluY 311 + 11 310 112410 59 0 3 59 0 1 102 6 4 46 2 0 25 chain 23082 chr12 133851895 + 29470077 29470429 Tigger4b 360 + 13 360 115230 87 2 0 43 0 2 53 0 9 8 14 0 87 13 12 12 0 1 33 chain 22534 chr12 133851895 + 29475745 29475994 L1PA4 6152 - 5881 6130 117008 249 chain 520500 chr12 133851895 + 29475994 29481836 L1PA4 6152 + 295 6152 5106 34 21 26 889 1 0 472 1 0 1449 1 0 1135 0 1 4 1 0 1377 0 10 125 0 3 332 chain 12523 chr12 133851895 + 29535736 29535878 HERV9-int 5642 - 3793 3935 150147 142 chain 171432 chr12 133851895 + 29536075 29538214 HERV9-int 5642 - 3587 5642 21895 305 0 1 616 6 8 18 84 0 176 23 19 10 0 1 110 1 0 318 8 9 464 chain 1133 chr12 133851895 + 29537024 29537085 HERV9-int 5642 - 4535 4596 188285 61 chain 120355 chr12 133851895 + 29538294 29539738 LTR12C 1709 - 0 1709 30921 84 8 7 79 1 103 208 0 4 106 4 2 4 1 0 77 0 2 94 1 161 390 0 1 387 chain 549048 chr12 133851895 + 29559250 29565404 L1PA3long 6157 - 5 6157 1571 137 0 2 7 1 4 2739 0 1 982 1 0 410 1 0 405 1 5 4 0 1 263 0 3 1023 14 0 166 chain 30108 chr12 133851895 + 29573431 29573748 AluYb8 318 - 0 318 84462 212 0 1 105 chain 43578 chr12 133851895 + 29576896 29577399 MER9a3 513 - 0 513 64707 68 2 0 197 0 1 192 0 11 44 chain 56762 chr12 133851895 + 29589442 29590206 LTR12 884 - 0 884 54677 119 0 8 81 1 0 299 2 0 11 2 1 21 42 1 48 0 157 138 chain 134055 chr12 133851895 + 29594079 29595564 L1PA3long 6157 + 4672 6157 27190 368 1 0 1066 0 1 50 chain 24610 chr12 133851895 + 29602311 29602609 L1PA7 6471 - 1516 1824 106935 277 4 14 17 chain 124538 chr12 133851895 + 29602623 29604093 L1PA7 6471 + 4986 6454 29529 300 3 0 216 0 2 117 8 7 826 chain 37481 chr12 133851895 + 29618761 29619185 L1PA5 6144 + 5715 6139 72839 424 chain 65879 chr12 133851895 + 29623168 29624021 L1PA8 5853 - 6 865 50152 86 5 4 16 2 1 40 19 32 60 3 1 43 1 0 506 0 1 48 6 3 18 chain 28501 chr12 133851895 + 29626620 29626993 MLT2A1 477 + 0 379 91180 142 0 1 26 1 5 21 16 17 167 chain 5532 chr12 133851895 + 29631610 29631680 MER41B 635 - 83 154 189737 43 1 2 26 chain 3882 chr12 133851895 + 29651724 29651769 MER3 215 - 135 180 209134 45 chain 54741 chr12 133851895 + 29708261 29708877 L1PA7 6471 - 5 619 55875 7 3 0 7 0 1 599 chain 5801 chr12 133851895 + 29727402 29727792 MLT1A 405 - 16 399 187137 18 6 0 28 11 1 26 1 2 15 244 251 18 9 10 14 chain 259057 chr12 133851895 + 29737377 29740257 L1PA4 6152 - 1 2891 15750 167 1 2 35 0 2 967 1 0 101 0 3 522 0 4 326 0 1 760 chain 5175 chr12 133851895 + 29781899 29781968 MER4B 649 + 327 411 193287 17 0 15 52 chain 3172 chr12 133851895 + 29783638 29783770 L1ME1 1623 - 228 372 221515 22 81 93 29 chain 18712 chr12 133851895 + 29789477 29789694 AluSc 308 + 7 224 130918 217 chain 174999 chr12 133851895 + 29793258 29795546 L1PBa1 4058 + 36 2377 21462 11 13 10 73 0 20 20 1 0 59 2 3 5 3 0 168 5 14 12 3 1 159 27 55 462 1 0 74 0 2 262 8 5 190 3 8 18 1 0 80 0 1 259 0 1 92 2 0 20 0 1 6 1 0 143 7 9 98 chain 35282 chr12 133851895 + 29795897 29796374 L1PB1 5432 + 4634 5115 75819 69 1 3 252 0 1 84 16 12 39 0 4 5 1 2 10 chain 23582 chr12 133851895 + 29816892 29817147 AluYa5 310 + 54 309 112679 255 chain 21270 chr12 133851895 + 29847600 29847894 AluSq2 311 + 10 311 122958 118 0 1 11 8 5 6 0 3 78 2 8 71 chain 2823 chr12 133851895 + 29866385 29866533 Charlie1a 1436 - 593 733 228422 25 102 94 21 chain 18816 chr12 133851895 + 29868560 29868916 THE1C 375 - 0 368 130634 122 52 62 4 0 1 77 44 45 57 chain 23987 chr12 133851895 + 29871600 29871884 AluY 311 + 16 301 110398 116 0 1 168 chain 6770 chr12 133851895 + 29884484 29884569 MER85 139 - 0 95 179176 40 0 10 45 chain 30509 chr12 133851895 + 29893144 29893602 MLT2A1 477 + 0 477 83409 142 0 1 18 8 12 99 23 0 9 0 23 81 12 0 6 6 0 9 0 33 24 1 0 20 chain 9878 chr12 133851895 + 29897227 29897341 L1PA4 6152 + 6036 6151 161179 107 0 1 7 chain 28851 chr12 133851895 + 29910577 29910970 THE1B 368 - 0 368 89664 174 0 2 19 2 1 136 26 0 36 chain 6182 chr12 133851895 + 29939969 29940076 MER31A 484 + 8 116 183723 42 16 18 28 1 0 20 chain 6592 chr12 133851895 + 29941353 29941471 MER45R 1085 + 323 462 180528 17 1 3 61 14 33 25 chain 29945 chr12 133851895 + 29943504 29943909 L1PA8 5853 + 5395 5800 84985 23 0 6 140 1 0 44 2 0 71 1 0 63 2 1 12 3 0 6 0 2 37 chain 26572 chr12 133851895 + 29955177 29955460 AluYd8 298 - 15 298 97753 283 chain 3530 chr12 133851895 + 29958766 29958807 Tigger3c 601 + 53 94 214886 41 chain 543787 chr12 133851895 + 29962660 29968683 L1PA3long 6157 + 0 6156 2239 151 3 4 585 0 2 35 1 129 133 0 1 2838 0 1 2277 chain 20577 chr12 133851895 + 29975176 29975398 L1PA3long 6157 + 4961 5183 125368 222 chain 88507 chr12 133851895 + 29975398 29976368 L1PA3long 6157 + 5187 6157 40182 970 chain 122316 chr12 133851895 + 29980009 29981413 L1PA7 6471 + 5054 6459 30277 567 1 0 79 0 2 757 chain 145266 chr12 133851895 + 29986004 29987605 L1PA2 6032 + 4426 6031 25283 756 0 4 845 chain 532508 chr12 133851895 + 30001400 30007550 L1PA5 6144 + 0 6144 3908 242 0 1 27 0 1 490 0 1 301 5 6 166 4 5 2114 21 10 340 0 1 923 3 0 264 0 1 276 0 1 237 0 2 298 0 1 70 3 0 366 chain 34346 chr12 133851895 + 30007551 30007933 L1PA5 6144 + 5761 6144 77131 203 0 1 179 chain 69720 chr12 133851895 + 30037698 30038791 MER11B 1079 - 0 1079 48512 24 11 0 20 1 2 153 0 1 50 17 0 8 8 28 15 52 44 16 2 1 6 0 7 109 5 0 9 4 10 52 0 1 15 24 12 25 15 14 94 0 5 358 chain 3104 chr12 133851895 + 30039369 30039417 MER4B 649 - 602 649 222861 23 5 4 20 chain 4996 chr12 133851895 + 30041171 30041589 LTR12D 1347 - 265 696 195185 28 237 291 22 89 48 42 chain 2518 chr12 133851895 + 30041465 30041541 LTR12D 1347 - 845 879 232928 25 42 0 9 chain 10220 chr12 133851895 + 30059839 30059978 L1PA16 3655 + 3449 3586 159512 6 0 1 122 3 0 8 chain 538328 chr12 133851895 + 30062858 30068985 L1PA5 6144 + 3 6144 3097 118 0 14 306 0 1 1909 0 2 811 1 0 2470 2 0 176 0 1 80 1 0 253 chain 3062 chr12 133851895 + 30084851 30084885 MER47C 97 + 33 67 223786 34 chain 76907 chr12 133851895 + 30084986 30085954 LTR5_Hs 974 - 0 974 45024 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 32641 chr12 133851895 + 30086375 30086818 MLT2A1 477 - 1 477 79783 18 1 0 36 17 37 211 1 5 26 0 1 95 0 9 38 chain 188305 chr12 133851895 + 30086818 30089093 HERVL-int 5654 - 0 2285 20211 135 1 7 77 0 1 63 2 1 5 0 1 937 1 0 150 0 1 679 1 0 23 0 5 152 11 10 38 chain 46559 chr12 133851895 + 30103074 30103634 L1PA7 6471 + 5905 6470 61551 400 8 0 8 0 8 126 0 7 5 2 0 11 chain 71427 chr12 133851895 + 30106593 30107398 L1PA3long 6157 + 5344 6151 47730 40 1 0 411 0 2 26 0 1 327 chain 154580 chr12 133851895 + 30128385 30130156 L1P1 4361 + 2541 4328 24036 713 0 2 60 0 1 384 15 16 146 0 14 274 1 0 154 1 0 23 chain 82348 chr12 133851895 + 30134880 30135800 L1PA4 6152 - 0 919 42610 164 2 0 269 0 1 485 chain 31283 chr12 133851895 + 30141442 30141885 MLT2A1 477 + 0 477 82017 168 5 2 21 11 16 8 5 0 86 0 3 79 17 51 43 chain 22685 chr12 133851895 + 30183067 30183333 L1PA7 6471 - 37 303 117141 266 chain 367737 chr12 133851895 + 30189013 30193140 L1PA3long 6157 - 0 4141 11158 154 0 1 235 20 5 992 0 5 189 1 0 170 0 1 1141 0 2 284 0 2 500 3 22 438 chain 49714 chr12 133851895 + 30208276 30209013 LTR12 884 - 0 870 59222 416 19 18 73 2 0 22 3 0 5 54 17 42 1 3 18 0 2 25 5 178 40 1 0 11 chain 2838 chr12 133851895 + 30208816 30208863 LTR12 884 - 761 808 190102 47 chain 26638 chr12 133851895 + 30209013 30209413 LTR7 482 + 0 471 97519 51 0 2 6 2 0 10 8 46 106 1 2 37 1 32 127 16 17 35 chain 294629 chr12 133851895 + 30209426 30213160 HERVH-int 3825 + 0 3825 13721 315 28 29 21 3 4 102 0 60 16 1 0 23 1 0 7 1 0 22 0 30 14 26 86 31 69 9 10 1 0 213 1 0 826 9 8 457 0 1 808 0 3 313 40 41 19 8 8 349 chain 12339 chr12 133851895 + 30227285 30227442 L1PA8 5853 - 237 394 150864 6 2 0 46 1 0 40 0 3 62 chain 12528 chr12 133851895 + 30227442 30227617 L1PA8 5853 + 5646 5817 150125 32 2 1 14 1 0 47 2 1 19 1 0 57 chain 45145 chr12 133851895 + 30238224 30238773 MLT2A2 560 - 0 553 62874 6 0 4 370 1 0 85 0 1 87 chain 11243 chr12 133851895 + 30262938 30263170 LTR12C 1709 - 872 1059 155248 55 5 1 32 21 21 45 41 0 33 chain 59473 chr12 133851895 + 30267622 30268282 L1PA5 6144 - 0 660 53128 660 chain 109917 chr12 133851895 + 30309621 30311266 LTR12C 1709 + 0 1709 34235 266 0 1 67 0 11 305 0 278 184 9 6 106 0 4 154 329 0 14 0 102 211 chain 29176 chr12 133851895 + 30310731 30311041 AluYa5 310 - 0 310 88176 310 chain 88472 chr12 133851895 + 30326594 30327651 MER11C 1089 + 0 1073 40197 146 0 6 98 10 11 52 0 4 373 0 4 43 0 1 335 chain 27673 chr12 133851895 + 30343119 30343486 L1PA16 3655 - 62 424 94138 14 4 1 288 2 0 59 chain 85816 chr12 133851895 + 30374889 30375937 MER11C 1089 + 0 1059 41224 250 6 7 56 0 4 216 6 7 148 0 4 45 0 1 321 chain 45523 chr12 133851895 + 30379455 30380230 L1PB3 3668 + 2880 3595 62483 108 2 0 17 3 0 77 0 2 10 0 3 86 1 0 66 31 33 8 1 0 99 8 7 79 59 7 18 1 0 3 1 0 25 3 1 37 7 3 13 0 1 12 chain 10885 chr12 133851895 + 30385229 30385364 LTR24 460 + 325 460 156639 135 chain 4955 chr12 133851895 + 30413213 30413276 L1MA2 4263 + 5 68 195641 17 1 0 11 0 1 34 chain 117781 chr12 133851895 + 30415883 30417386 THE1A-int 1579 + 0 1579 31862 366 6 5 70 6 7 54 1 0 205 33 110 762 chain 2844 chr12 133851895 + 30426246 30426434 THE1C-int 1605 - 1276 1474 227959 27 139 149 22 chain 120170 chr12 133851895 + 30432324 30434206 THE1A-int 1579 + 0 1574 31000 168 14 17 205 13 14 19 316 2 77 8 7 154 13 13 720 1 3 157 0 1 17 chain 373449 chr12 133851895 + 30442909 30447224 L1PA5 6144 + 1819 6131 10977 166 0 1 207 0 2 299 0 1 662 0 12 197 23 3 153 10 11 1743 0 1 707 0 3 20 4 0 124 chain 25924 chr12 133851895 + 30490971 30491272 L1PA4 6152 + 5850 6152 100322 188 0 1 113 chain 56766 chr12 133851895 + 30506747 30507365 L1PA2 6032 - 0 618 54674 618 chain 125700 chr12 133851895 + 30518871 30520420 L1P2 5180 - 3616 5178 29185 125 1 0 99 5 8 534 0 15 268 2 1 263 5 4 52 2 1 43 8 7 142 chain 6651 chr12 133851895 + 30527873 30527955 LTR8 732 - 62 144 180076 82 chain 175591 chr12 133851895 + 30528629 30530958 L1PA10 4194 - 33 2367 21387 11 1 0 33 4 1 121 0 1 412 0 1 42 6 0 395 0 2 408 0 1 22 1 3 28 0 4 16 1 4 20 7 8 194 0 6 10 5 7 185 0 4 89 0 1 57 13 0 248 chain 8001 chr12 133851895 + 30543438 30543611 LOR1-int 1871 + 88 255 171058 77 60 54 36 chain 2993 chr12 133851895 + 30553597 30553632 LTR60 593 - 558 593 225152 35 chain 50017 chr12 133851895 + 30572587 30573181 L1PA7 6471 + 5860 6454 59002 594 chain 350471 chr12 133851895 + 30585435 30589327 L1PA4 6152 - 1 3895 11585 332 2 1 2532 0 1 120 1 0 244 0 3 661 chain 5186 chr12 133851895 + 30594137 30594221 LTR38 553 + 15 110 193181 28 1 0 16 5 17 34 chain 168224 chr12 133851895 + 30627623 30630074 L1MA2 4263 + 1601 4105 22260 113 0 1 146 41 44 42 0 4 16 1 0 120 0 4 78 10 4 59 1 10 60 0 1 54 1 6 154 0 1 8 0 15 21 2 1 45 0 1 35 2 0 57 5 10 63 11 12 124 0 2 169 0 1 87 5 6 16 0 1 40 10 12 89 1 0 30 0 4 165 3 0 31 26 22 36 1 16 25 1 0 147 3 0 149 1 0 6 2 1 74 24 19 17 4 10 20 chain 351650 chr12 133851895 + 30673100 30677011 L1PA4 6152 - 9 3925 11556 1902 0 1 987 0 3 496 0 1 526 chain 22137 chr12 133851895 + 30681629 30681926 L1PA8 5853 + 5564 5853 119638 45 2 0 69 2 1 14 1 0 42 2 0 9 1 0 16 1 0 93 chain 9516 chr12 133851895 + 30682110 30682219 L1PA5 6144 + 6035 6144 162995 109 chain 6749 chr12 133851895 + 30711351 30711677 MER76 683 + 341 670 179331 44 79 92 15 141 131 47 chain 133245 chr12 133851895 + 30714383 30715931 LTR12C 1709 + 0 1709 27385 309 0 1 4 1 0 177 0 1 207 0 159 253 1 0 5 3 1 107 0 4 481 chain 546690 chr12 133851895 + 30741287 30747445 L1PA4 6152 + 0 6151 1864 576 1 0 132 12 5 2452 1 0 20 0 1 787 8 9 683 1 0 1343 0 1 142 chain 29542 chr12 133851895 + 30756291 30756780 L1PA16 3655 + 2280 2790 86446 117 2 1 122 1 2 138 72 87 18 5 11 14 chain 358890 chr12 133851895 + 30756795 30761493 L1PA7 6471 + 8 6456 11381 118 1 11 59 12 11 23 73 72 103 10 0 7 2 0 61 1 0 9 2 0 95 3 0 165 0 5 101 2 0 5 5 10 59 35 35 33 6 5 106 1 2 104 1 7 34 0 1723 112 4 17 228 0 1 200 7 2 460 0 2 148 1 7 145 8 9 164 0 1 203 4 8 944 2 0 269 18 19 257 0 1 288 chain 18451 chr12 133851895 + 30769633 30769842 AluY 311 + 92 302 131636 34 0 1 175 chain 24828 chr12 133851895 + 30780310 30780582 L1PA2 6032 + 5757 6031 105733 102 0 2 170 chain 8522 chr12 133851895 + 30808532 30808637 L1MA7 2200 - 285 393 168174 85 0 3 20 chain 24695 chr12 133851895 + 30828479 30828791 AluY 311 + 0 296 106463 123 19 3 170 chain 5547 chr12 133851895 + 30836550 30836625 MER3 215 - 53 127 189591 50 1 0 24 chain 22395 chr12 133851895 + 30912567 30912837 AluY 311 + 10 282 118507 87 0 1 34 0 1 149 chain 9445 chr12 133851895 + 30914667 30914917 L1MB8 1703 + 1499 1678 163336 5 0 1 56 0 1 15 93 28 23 5 0 34 3 0 16 chain 153615 chr12 133851895 + 30928948 30930985 MER4-int 2692 + 631 2692 24143 60 0 5 27 4 3 78 0 2 50 0 1 516 0 38 54 3 4 130 0 4 149 1 3 135 0 2 156 1 4 92 36 5 48 0 1 65 1 0 5 7 10 5 1 0 217 0 2 9 6 0 181 chain 33711 chr12 133851895 + 30930993 30931462 MER4A1 472 + 0 472 78077 15 8 10 159 27 28 260 chain 34970 chr12 133851895 + 30937174 30937673 LTR19A 502 + 0 481 76229 65 4 1 44 10 7 120 6 5 62 1 0 149 24 14 14 chain 24899 chr12 133851895 + 30939705 30939989 AluYa5 310 + 34 306 105349 98 1 0 160 11 0 14 chain 4239 chr12 133851895 + 30950992 30951045 Charlie2b 853 - 700 753 204039 53 chain 40029 chr12 133851895 + 30990024 30990526 LTR10F 562 + 0 562 69283 173 1 22 23 0 14 9 0 24 292 0 1 4 chain 46256 chr12 133851895 + 31002485 31003056 LTR10C 591 - 0 591 61807 16 0 13 17 17 22 13 5 7 503 chain 77681 chr12 133851895 + 31003898 31004851 LTR13_ 950 + 0 950 44664 268 1 3 336 14 3 36 3 9 295 chain 73405 chr12 133851895 + 31009640 31010456 L1PA4 6152 + 5085 5902 46832 163 0 1 653 chain 20492 chr12 133851895 + 31010456 31010682 L1PA4 6152 + 5903 6129 125650 226 chain 4659 chr12 133851895 + 31031292 31031369 MIR 256 - 14 92 198958 41 10 11 26 chain 519820 chr12 133851895 + 31041617 31048104 L1PA6 6164 - 2 6151 5180 456 0 4 145 0 3 53 306 0 205 0 4 494 0 3 108 9 8 313 0 4 254 0 2 180 81 0 94 3 8 70 0 1 56 0 10 497 0 1 862 1 2 136 0 7 318 5 0 1370 25 35 446 chain 5622 chr12 133851895 + 31044141 31044220 L1PA6 6164 - 2 77 188850 6 4 0 69 chain 5195 chr12 133851895 + 31062231 31062292 LTR15 485 + 425 485 193086 51 1 0 9 chain 20412 chr12 133851895 + 31066578 31066942 THE1D 372 - 0 372 125860 27 1 0 98 77 78 6 0 3 28 6 10 57 0 1 64 chain 7338 chr12 133851895 + 31087335 31087416 THE1A 353 - 19 100 175173 81 chain 12450 chr12 133851895 + 31087509 31087697 MER30 238 + 39 238 150463 43 0 4 29 4 0 12 16 27 84 chain 13764 chr12 133851895 + 31097460 31097704 L1MA8 2339 + 1793 2027 145387 47 21 17 67 0 1 6 4 0 9 14 12 61 1 0 14 chain 28337 chr12 133851895 + 31100343 31100695 THE1A 353 - 0 353 91809 182 0 1 170 chain 127913 chr12 133851895 + 31100700 31102248 THE1A-int 1579 - 5 1579 28595 75 0 5 342 0 12 644 13 18 207 0 1 160 0 3 107 chain 28842 chr12 133851895 + 31102248 31102615 THE1A 353 - 0 353 89706 226 13 0 17 1 0 110 chain 22332 chr12 133851895 + 31180016 31180350 LTR3A 482 + 26 361 118767 83 17 18 17 0 1 83 31 32 5 2 0 96 chain 17010 chr12 133851895 + 31224708 31225002 LTR12C 1709 + 932 1193 135566 180 0 1 4 31 1 15 30 26 34 chain 11359 chr12 133851895 + 31270350 31270498 HERVE-int 4064 + 2118 2264 154866 83 0 1 9 3 0 53 chain 11698 chr12 133851895 + 31271827 31271976 HERVE-int 4064 + 2118 2264 153485 93 3 0 53 chain 9464 chr12 133851895 + 31273472 31273612 HERVE-int 4064 + 2118 2264 163260 55 0 9 27 18 15 40 chain 49707 chr12 133851895 + 31274069 31274672 HERVE-int 4064 + 2118 2717 59230 93 3 0 492 4 3 11 chain 50493 chr12 133851895 + 31275961 31276560 HERVE-int 4064 + 2122 2717 58656 89 3 0 127 1 0 379 chain 21477 chr12 133851895 + 31298717 31298964 L1PA3long 6157 - 0 247 122232 247 chain 540985 chr12 133851895 + 31316009 31322025 L1PA3long 6157 + 0 6157 2665 70 0 1 81 0 1 211 0 1 412 1 129 1727 0 5 1379 0 1 342 0 4 1638 7 0 8 1 8 139 chain 23969 chr12 133851895 + 31328420 31328703 AluY 311 + 21 302 110514 102 2 0 179 chain 56002 chr12 133851895 + 31333178 31333788 SVA_D 2077 - 0 610 55120 610 chain 119966 chr12 133851895 + 31342173 31343592 L1PA7 6471 - 3 1424 30973 154 0 1 371 0 1 894 chain 147527 chr12 133851895 + 31343592 31345302 L1PA5 6144 + 4407 6132 24957 315 0 1 264 6 3 764 3 20 358 chain 32996 chr12 133851895 + 31352300 31352716 L1PA5 6144 - 0 415 79220 9 2 0 138 1 0 6 4 6 256 chain 31007 chr12 133851895 + 31362748 31363096 L1PA4 6152 + 5793 6142 82497 245 0 1 103 chain 12761 chr12 133851895 + 31403862 31404051 Tigger2 2703 - 234 419 149207 5 2 0 88 3 0 29 15 16 47 chain 43092 chr12 133851895 + 31426180 31426683 L1P1 4361 - 20 520 65299 12 2 1 23 1 0 155 1 0 309 chain 52102 chr12 133851895 + 31426683 31427265 L1PA4 6152 + 5569 6151 57564 582 chain 21884 chr12 133851895 + 31443670 31443927 AluSp 311 - 29 286 120692 257 chain 24053 chr12 133851895 + 31450401 31450695 AluSc 308 - 5 297 110026 271 4 2 19 chain 4630 chr12 133851895 + 31456692 31456744 U13_ 108 + 47 99 199297 52 chain 23954 chr12 133851895 + 31519729 31520019 AluY 311 + 1 309 110592 16 0 17 231 0 1 43 chain 24201 chr12 133851895 + 31521118 31521410 AluSp 311 + 0 300 109204 18 0 8 274 chain 3580 chr12 133851895 + 31532822 31532861 LTR41 747 + 696 735 213978 39 chain 6911 chr12 133851895 + 31549331 31549435 U6 107 + 8 107 178104 22 3 1 18 3 0 58 chain 65234 chr12 133851895 + 31636277 31638486 HSMAR1 1287 + 0 1285 50451 67 1 0 27 299 0 74 0 4 6 4 9 14 1 0 7 1006 367 24 3 0 8 0 3 412 0 3 107 1 0 103 0 3 12 1 3 32 chain 3311 chr12 133851895 + 31647596 31647631 MER51A 677 + 199 234 218758 35 chain 8446 chr12 133851895 + 31659237 31659338 HY3 101 - 0 101 168586 101 chain 154633 chr12 133851895 + 31690334 31694939 L1MA3 4352 + 24 4037 24030 13 1 0 86 1 0 33 1 0 17 66 64 51 0 2 23 26 10 249 19 0 127 2 6 18 18 6 42 2 0 22 2 1 74 19 16 41 11 91 63 3 2 29 1 0 22 0 1 22 16 13 52 0 5 12 2121 1490 50 4 5 13 0 2 37 4 6 42 1 0 6 23 20 33 1 2 4 1 0 101 1 0 16 4 1 211 0 6 79 1 0 20 2 0 12 9 10 40 0 3 45 0 4 67 0 1 336 0 1 137 chain 544987 chr12 133851895 + 31703000 31709139 L1PA4 6152 - 1 6152 2076 779 1 0 64 0 4 639 1 0 651 0 1 152 0 2 178 1 0 125 4 0 210 0 1 78 0 4 1605 0 1 82 0 5 153 5 0 9 0 5 259 0 2 99 0 2 465 0 3 113 6 0 460 chain 3793 chr12 133851895 + 31720021 31720071 MER65A 464 + 412 464 210491 5 0 2 45 chain 9816 chr12 133851895 + 31741404 31741613 MER2 342 + 80 291 161515 87 10 11 26 61 62 25 chain 5160 chr12 133851895 + 31747079 31747140 U5 65 - 4 65 193442 61 chain 42329 chr12 133851895 + 31761016 31761558 LTR10E 629 + 0 618 66233 18 2 1 145 0 2 48 5 81 157 0 1 115 2 0 50 chain 14067 chr12 133851895 + 31761561 31761712 L1PA3long 6157 + 6006 6157 144329 151 chain 28907 chr12 133851895 + 31771406 31771903 MER41E 591 - 82 591 89431 59 0 1 26 49 52 100 21 28 16 16 17 103 1 0 4 9 10 93 chain 3796 chr12 133851895 + 31772854 31772901 LTR54 533 + 486 533 210444 47 chain 27867 chr12 133851895 + 31773737 31774029 AluYd8 298 - 6 298 93465 292 chain 5256 chr12 133851895 + 31781554 31781622 MER92B 628 + 0 68 192452 68 chain 27000 chr12 133851895 + 31783703 31784077 MLT2A1 477 - 95 477 96285 170 18 19 20 2 6 25 1 2 32 0 2 106 chain 22198 chr12 133851895 + 31792260 31792519 AluSp 311 - 14 273 119360 259 chain 22451 chr12 133851895 + 31800499 31800771 AluSx1 309 + 19 291 118247 272 chain 44962 chr12 133851895 + 31818459 31818972 MER9a2 513 - 0 513 63106 513 chain 22373 chr12 133851895 + 31836376 31836738 THE1B 368 + 0 368 118614 177 58 65 64 14 13 49 chain 66699 chr12 133851895 + 31842707 31843689 L1PB1 5432 - 5 951 49788 5 2 0 18 1 0 13 1 0 21 1 0 22 2 0 17 10 7 25 10 0 3 3 0 16 4 3 40 1 0 16 2 1 52 2 0 9 5 1 12 1 0 8 1 0 24 3 0 9 1 2 123 0 2 180 2 1 92 0 2 76 3 0 146 chain 11381 chr12 133851895 + 31858545 31859314 MER83 447 + 0 405 154779 56 0 13 33 209 150 40 387 68 39 0 1 5 chain 74500 chr12 133851895 + 31860743 31861749 MER11A 1151 + 0 1144 46276 55 0 99 76 1 0 62 12 8 27 0 2 59 0 1 54 0 1 92 0 7 6 1 0 59 18 1 64 6 9 8 1 0 43 0 2 8 0 4 70 0 20 7 1 15 49 0 9 24 2 3 141 1 0 59 chain 6740 chr12 133851895 + 31865490 31865595 L1MA4 2864 - 343 442 179391 22 12 5 5 0 1 66 chain 16775 chr12 133851895 + 31870651 31870877 L1PA8 5853 - 0 222 136185 92 2 1 19 2 1 47 1 0 14 2 1 47 chain 23466 chr12 133851895 + 31879091 31879383 AluSp 311 - 11 300 113285 19 4 1 269 chain 3984 chr12 133851895 + 31883136 31883246 MER65D 500 + 2 114 207634 21 10 11 18 30 31 31 chain 11541 chr12 133851895 + 31886254 31886397 LTR8 732 - 0 146 154137 114 0 3 29 chain 6161 chr12 133851895 + 31889834 31889908 MER66A 478 - 10 84 183879 74 chain 35527 chr12 133851895 + 31897234 31897708 LTR10F 562 - 0 562 75508 270 32 90 21 0 28 113 0 2 38 chain 10586 chr12 133851895 + 31903333 31903488 LTR29 598 - 244 393 157889 39 2 1 52 2 0 5 2 0 21 1 0 31 chain 45135 chr12 133851895 + 31911199 31911805 LTR10F 562 + 0 562 62887 33 0 4 39 0 5 42 28 0 108 25 0 331 chain 2058 chr12 133851895 + 31911313 31911337 LTR10F 562 + 207 231 218142 24 chain 2123 chr12 133851895 + 31911449 31911474 LTR10F 562 + 147 172 176531 25 chain 28515 chr12 133851895 + 31921141 31921543 MER1A 529 + 98 503 91117 109 20 21 14 0 1 217 14 15 28 chain 24886 chr12 133851895 + 31934063 31934361 AluSq10 312 - 8 305 105436 129 2 1 167 chain 22417 chr12 133851895 + 31947034 31947342 AluY 311 + 1 307 118391 5 0 2 125 20 19 125 2 4 18 5 0 8 chain 22318 chr12 133851895 + 31951269 31951538 AluY 311 + 0 301 118835 67 0 14 51 0 1 63 0 15 55 0 2 33 chain 60082 chr12 133851895 + 31953684 31955404 MER4E1 777 - 8 777 52785 114 1 2 33 1 0 70 50 6 111 860 0 83 0 1 40 43 0 284 5 0 25 chain 132578 chr12 133851895 + 31957611 31959288 LTR12C 1709 - 0 1709 27505 33 0 4 30 0 4 97 0 102 211 0 4 107 3 1 5 1 0 259 78 0 15 1 0 523 1 0 4 8 9 25 0 1 167 5 4 104 chain 3715 chr12 133851895 + 31958357 31958400 LTR12C 1709 - 1016 1059 137883 43 chain 1714 chr12 133851895 + 31958400 31958435 LTR12C 1709 - 621 656 158356 35 chain 56710 chr12 133851895 + 31960947 31962012 MER4E 760 + 0 760 54713 26 0 1 124 41 44 74 1 0 100 0 2 75 2 1 176 309 0 137 chain 113080 chr12 133851895 + 31976375 31978464 L1PB2 3958 - 120 1860 33354 63 1 0 13 13 11 65 6 5 57 18 7 77 1 0 88 4 0 13 2 0 9 0 1 27 30 25 16 2 1 53 2 0 64 0 1 126 3 1 184 8 7 47 1 0 11 7 4 143 307 3 165 0 1 8 156 70 111 0 75 188 chain 120183 chr12 133851895 + 31981615 31984226 L1PB2 3958 + 2204 3838 30996 277 11 0 82 322 0 314 1 0 47 1 0 170 647 22 126 0 1 66 2 0 51 2 1 16 30 25 27 0 1 9 2 0 12 4 0 166 1 0 64 6 5 65 13 11 13 1 0 63 chain 38959 chr12 133851895 + 31985566 31986164 LTR77 607 - 15 607 70789 78 7 9 92 10 7 29 1 0 127 1 4 35 0 5 101 56 44 61 chain 18778 chr12 133851895 + 32000554 32000787 MER41A 554 + 312 554 130747 82 0 5 21 0 4 130 chain 3594 chr12 133851895 + 32001632 32001674 MER41-int 2638 + 128 170 213764 42 chain 12573 chr12 133851895 + 32004783 32004936 MER41-int 2638 + 2481 2634 149950 153 chain 23484 chr12 133851895 + 32012648 32012964 THE1C 375 - 55 375 113198 133 1 0 6 0 1 41 7 11 128 chain 2671 chr12 133851895 + 32026588 32026646 MER34A1 583 + 81 137 230767 15 9 5 9 1 3 24 chain 3218 chr12 133851895 + 32034689 32034831 MER58A 224 - 34 177 220615 23 89 90 30 chain 49352 chr12 133851895 + 32035639 32036321 LTR12 884 + 0 882 59486 24 1 0 244 0 91 18 2 0 67 4 1 125 24 131 22 5 5 21 1 9 124 chain 27478 chr12 133851895 + 32038031 32038393 L1PA8 5853 + 5499 5853 94720 33 1 0 32 1 0 45 2 0 67 6 5 7 1 0 52 2 1 19 1 0 93 chain 36944 chr12 133851895 + 32040131 32040638 LOR1a 498 + 0 498 73593 55 0 3 5 16 1 44 1 0 263 11 0 69 0 15 43 chain 4419 chr12 133851895 + 32045718 32045769 MSTA 426 + 375 426 201695 51 chain 48843 chr12 133851895 + 32100516 32101179 MER11A 1151 + 6 762 59844 49 0 99 24 8 0 52 1 0 64 4 0 32 0 4 110 0 1 97 0 1 144 10 12 63 1 0 4 chain 37968 chr12 133851895 + 32108931 32109694 LTR10F 562 - 0 562 72179 51 0 1 22 290 0 228 0 87 116 0 1 56 chain 30729 chr12 133851895 + 32110328 32110816 LTR7B 505 + 2 505 82987 103 0 10 60 44 20 19 14 38 26 0 2 59 9 14 9 1 0 79 14 13 51 chain 16079 chr12 133851895 + 32118991 32119213 MER30 238 - 2 238 138117 98 2 0 8 4 20 110 chain 28212 chr12 133851895 + 32121384 32121681 AluYk12 309 - 12 309 92266 297 chain 8637 chr12 133851895 + 32129627 32129800 Tigger2a 444 - 228 409 167562 11 0 6 61 18 27 11 7 0 21 1 0 4 12 13 27 chain 22244 chr12 133851895 + 32146125 32146425 AluY 311 + 6 302 119147 112 5 0 14 23 24 146 chain 5382 chr12 133851895 + 32170178 32170254 LTR29 598 - 390 461 191170 59 0 1 4 6 0 7 chain 9043 chr12 133851895 + 32173524 32173632 MER41B 635 - 8 116 165361 108 chain 36305 chr12 133851895 + 32174940 32175929 LTR9B 643 + 5 643 74497 62 348 2 4 0 1 31 0 8 88 4 7 17 7 8 38 1 0 65 6 7 70 44 39 51 11 0 10 5 13 15 8 0 47 17 15 40 chain 3490 chr12 133851895 + 32175954 32176008 MER67C 710 - 461 519 215517 24 5 9 25 chain 29010 chr12 133851895 + 32180948 32181462 LTR10E 629 + 0 620 88940 94 3 119 83 2 1 27 6 5 30 18 17 128 83 76 40 chain 5700 chr12 133851895 + 32185253 32185318 MER89 557 + 407 472 188111 65 chain 20973 chr12 133851895 + 32185988 32186246 AluY 311 + 46 305 124020 190 0 1 68 chain 22209 chr12 133851895 + 32201731 32202022 MER1B 344 + 45 339 119308 221 12 15 58 chain 6323 chr12 133851895 + 32203893 32203975 Tigger3b 1229 + 647 729 182622 82 chain 3965 chr12 133851895 + 32206391 32206437 LTR44 473 + 418 464 207903 46 chain 36542 chr12 133851895 + 32207130 32207550 LTR3 431 + 11 431 74182 420 chain 45812 chr12 133851895 + 32207652 32208206 MER41A 554 + 0 554 62218 554 chain 60110 chr12 133851895 + 32209332 32210446 MER4E1 777 + 0 777 52768 229 4 5 232 329 0 76 12 8 72 1 0 37 4 0 118 chain 12621 chr12 133851895 + 32211121 32211314 MER30 238 - 0 204 149767 45 4 1 57 16 29 7 0 1 64 chain 51115 chr12 133851895 + 32211865 32212598 MER4E 760 + 0 736 58242 145 51 53 25 3 0 42 1 0 96 0 2 83 1 0 72 0 6 9 9 8 29 1 0 166 chain 4299 chr12 133851895 + 32213012 32213144 MER20B 722 - 357 489 203239 19 65 65 48 chain 11004 chr12 133851895 + 32238081 32238215 LTR17 781 - 455 589 156192 134 chain 24442 chr12 133851895 + 32246550 32246888 THE1C 375 + 0 355 107849 135 0 4 41 13 7 42 5 25 96 1 0 5 chain 75412 chr12 133851895 + 32252444 32253412 LTR5_Hs 974 + 0 974 45815 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 22837 chr12 133851895 + 32263682 32263931 L1PA3long 6157 + 5908 6157 116410 249 chain 10560 chr12 133851895 + 32344311 32344505 Tigger1 2417 + 0 200 158002 11 3 18 12 0 6 6 17 1 64 1 4 71 2 0 7 chain 23634 chr12 133851895 + 32347131 32347533 L1MA9 1812 + 22 442 112396 9 4 0 37 2 0 144 8 13 36 3 6 17 2 10 55 34 43 37 1 0 13 chain 57028 chr12 133851895 + 32352352 32353009 PABL_A 660 - 0 660 54518 80 0 2 68 0 2 197 1 0 311 chain 129176 chr12 133851895 + 32372772 32374187 L1PA3long 6157 + 4741 6157 28272 1273 0 1 142 chain 15160 chr12 133851895 + 32375939 32376167 Tigger1 2417 - 1439 1662 140879 10 2 0 3 3 0 9 0 4 46 11 6 32 0 1 112 chain 114214 chr12 133851895 + 32384525 32385800 L1PA3long 6157 - 1 1274 33024 4 1 0 175 0 2 1087 3 0 5 chain 6327 chr12 133851895 + 32388931 32389011 Tigger1 2417 + 176 258 182577 49 0 1 27 0 1 4 chain 34448 chr12 133851895 + 32401605 32402055 MER61D 487 - 1 480 76996 141 4 3 10 6 4 22 6 38 261 chain 76514 chr12 133851895 + 32411348 32412284 LTR13A 966 - 0 966 45204 60 5 6 516 1 0 171 0 1 64 0 23 41 0 6 78 chain 35656 chr12 133851895 + 32425122 32425557 PABL_A 660 - 7 445 75327 66 0 3 369 chain 43890 chr12 133851895 + 32428458 32428988 LTR17 781 + 255 781 64343 72 0 1 80 16 0 200 0 10 155 0 1 7 chain 27573 chr12 133851895 + 32429284 32429605 LTR17 781 + 0 326 94422 116 0 13 169 8 0 28 chain 6767 chr12 133851895 + 32432045 32432126 L1MB8 1703 + 1507 1588 179189 81 chain 57738 chr12 133851895 + 32463954 32465007 MER4E 760 - 0 760 54112 188 311 0 125 2 1 75 0 2 101 2 0 89 19 41 78 1 0 43 2 0 17 chain 15617 chr12 133851895 + 32468600 32469205 MER47A 366 + 0 295 139530 17 66 69 92 312 0 17 1 0 100 chain 165568 chr12 133851895 + 32469644 32471471 L1PA4 6152 - 4 1826 22580 256 1 0 640 7 3 923 chain 3823 chr12 133851895 + 32477898 32477945 Tigger6a 1079 - 589 636 210044 47 chain 24609 chr12 133851895 + 32478726 32479039 AluY 311 + 0 307 106938 30 14 6 224 0 2 45 chain 24936 chr12 133851895 + 32483225 32483503 L1PA5 6144 + 5851 6129 105133 278 chain 23424 chr12 133851895 + 32541243 32541525 AluY 311 + 8 286 113507 114 4 0 164 chain 10352 chr12 133851895 + 32543616 32543773 LTR12D 1347 - 597 897 158898 44 27 170 86 chain 23403 chr12 133851895 + 32558867 32559164 AluSp 311 - 2 300 113628 198 1 2 4 1 0 13 0 1 80 chain 25399 chr12 133851895 + 32559733 32560044 AluSg7 307 - 5 307 102690 9 10 0 161 0 1 131 chain 12729 chr12 133851895 + 32566065 32566221 L1PA7 6471 + 6311 6467 149335 4 0 1 141 1 0 10 chain 32913 chr12 133851895 + 32570127 32570885 L1M1 2793 - 960 1841 79349 29 0 2 129 0 2 7 12 10 17 7 4 32 8 13 23 233 347 38 1 0 39 0 9 129 1 0 25 3 1 25 chain 8123 chr12 133851895 + 32576563 32576801 MER41B 635 - 120 357 170367 69 28 29 25 86 84 30 chain 478958 chr12 133851895 + 32577010 32582679 L1PA7 6471 - 6 5735 7766 328 1 0 516 1 0 390 1 0 212 0 1 251 7 5 46 0 2 43 0 8 102 0 1 1007 0 4 19 2 1 32 0 7 8 10 0 583 0 3 255 0 1 507 1 0 329 0 1 17 0 36 12 1 2 20 0 1 56 0 1 257 2 5 580 0 7 73 chain 132161 chr12 133851895 + 32625042 32626585 LTR12C 1709 + 0 1709 27602 309 0 1 4 1 0 439 0 161 197 1 0 6 2 0 107 0 4 450 0 4 27 chain 37950 chr12 133851895 + 32659866 32660282 L1PA3long 6157 - 0 417 72212 4 0 1 412 chain 117651 chr12 133851895 + 32678424 32679840 LTR12C 1709 + 0 1709 31907 309 0 1 4 1 0 186 0 2 197 0 159 253 9 6 103 4 8 248 0 131 102 chain 5475 chr12 133851895 + 32681219 32681323 MER2B 336 - 20 125 190254 21 28 29 55 chain 23835 chr12 133851895 + 32705718 32706016 AluSp 311 - 17 300 111279 16 0 2 144 17 0 121 chain 145308 chr12 133851895 + 32715348 32716995 SVA_D 2077 - 1 2077 25279 224 0 1 93 2 0 216 0 352 152 0 1 35 0 86 868 9 10 17 10 0 21 chain 34718 chr12 133851895 + 32747047 32747571 MER1A 529 + 19 529 76597 18 4 0 17 38 39 27 2 0 335 25 16 58 chain 12137 chr12 133851895 + 32766245 32766404 HSMAR2 1300 + 1 159 151668 62 2 1 95 chain 43292 chr12 133851895 + 32804807 32805340 MLT2A2 560 + 11 560 65062 181 0 3 8 0 1 105 0 1 96 0 11 143 chain 37158 chr12 133851895 + 32822650 32823182 LTR10G 522 - 0 522 73299 14 1 0 59 4 1 86 0 2 5 30 13 7 0 14 137 4 0 68 1 0 116 chain 24296 chr12 133851895 + 32835071 32835365 AluSp 311 - 17 311 108673 294 chain 4786 chr12 133851895 + 32841364 32841421 MER41B 635 - 91 151 197513 18 0 3 39 chain 15856 chr12 133851895 + 32843923 32844138 MLT1B 390 - 0 232 138785 177 9 26 29 chain 25118 chr12 133851895 + 32853928 32854225 AluSp 311 + 0 297 104183 38 0 2 92 2 0 165 chain 21624 chr12 133851895 + 32854934 32855188 AluSx4 309 + 47 301 121685 254 chain 6799 chr12 133851895 + 32858339 32858431 HY1 111 - 1 102 178958 21 0 3 45 0 2 20 0 4 6 chain 7743 chr12 133851895 + 32883364 32883453 AluSz 310 + 10 99 172636 89 chain 23636 chr12 133851895 + 32885758 32886037 AluSp 311 + 10 285 112382 175 4 0 100 chain 2942 chr12 133851895 + 32909946 32909999 LTR16A 446 - 359 398 226308 7 14 0 32 chain 27015 chr12 133851895 + 32920465 32920752 AluYa5 310 - 0 287 96235 287 chain 5453 chr12 133851895 + 32935660 32935735 L1PB1 5432 - 12 86 190491 16 1 0 13 1 0 21 0 1 23 chain 5919 chr12 133851895 + 32938623 32938689 LTR12F 595 - 115 181 186004 66 chain 74240 chr12 133851895 + 32951493 32952494 L1PB2 3958 + 2872 3828 46394 52 1 0 63 9 0 98 0 1 276 0 3 12 6 0 62 40 12 94 9 8 64 1 0 64 1 0 72 2 0 22 1 0 11 0 1 41 chain 283623 chr12 133851895 + 32957752 32961623 L1PA11 4918 - 292 4894 14426 15 19 13 5 1 0 10 25 16 12 2 1 11 35 26 7 5 0 22 2 1 13 2 0 77 3 2 69 7 0 467 1 0 42 1 0 114 1 2 111 0 591 70 0 3 324 7 6 173 1 0 114 0 1 22 0 5 15 8 12 7 1 0 48 11 0 51 0 11 17 0 1 303 7 4 60 1 0 4 0 1 103 0 178 57 1 0 34 0 1 645 1 4 24 3 5 477 2 1 5 2 0 33 2 1 51 8 6 5 0 2 37 2 0 36 2 0 18 chain 29217 chr12 133851895 + 32963609 32963914 AluYa5 310 - 5 310 87976 305 chain 16627 chr12 133851895 + 32970062 32970301 L1PA16 3655 + 2439 2679 136597 111 0 3 62 16 0 8 0 15 37 1 0 4 chain 4355 chr12 133851895 + 32988898 32988948 MER63B 433 - 86 136 202522 50 chain 19981 chr12 133851895 + 33009449 33009697 L1PA5 6144 + 5896 6144 127201 92 10 10 146 chain 24988 chr12 133851895 + 33041416 33041726 AluSp 311 - 5 311 104869 168 13 9 129 chain 25724 chr12 133851895 + 33065667 33065968 AluSp 311 - 0 301 101197 301 chain 1250 chr12 133851895 + 33067064 33067236 L1MB5 1630 + 1186 1361 129518 32 1 4 139 chain 123401 chr12 133851895 + 33067619 33069201 THE1A-int 1579 + 0 1579 29915 146 13 1 121 1 2 380 0 1 4 0 2 467 19 23 422 0 1 9 chain 22968 chr12 133851895 + 33069201 33069553 THE1A 353 + 0 353 115764 13 2 0 34 0 1 60 32 30 141 6 10 64 chain 1119 chr12 133851895 + 33069553 33069707 L1MB5 1630 + 1382 1534 129518 10 1 0 80 2 0 8 0 3 5 13 11 35 chain 13895 chr12 133851895 + 33076942 33077132 Tigger4 2445 - 360 549 144936 54 1 0 9 1 0 70 0 1 4 2 1 45 0 1 4 chain 9219 chr12 133851895 + 33077644 33077943 L1PA11 4918 - 290 555 164463 17 131 100 23 1 0 12 3 1 70 6 0 6 3 6 12 0 3 15 chain 5075 chr12 133851895 + 33081811 33081925 L1MB3 1562 - 10 124 194348 22 8 7 37 22 23 25 chain 40034 chr12 133851895 + 33081946 33082548 PRIMA4_LTR 623 + 21 623 69273 70 0 1 96 4 0 119 0 56 21 0 3 10 58 0 38 5 6 84 0 1 97 chain 20301 chr12 133851895 + 33107744 33108031 L1PA8 5853 + 5572 5853 126229 36 2 0 68 19 17 47 2 1 22 1 0 90 chain 548196 chr12 133851895 + 33109086 33115264 L1PA4 6152 + 0 6151 1681 25 1 0 435 30 0 1857 0 3 1911 13 14 1906 chain 38115 chr12 133851895 + 33136267 33136767 LTR19A 502 + 0 502 71962 65 2 1 171 6 5 59 1 0 159 10 11 17 0 4 10 chain 42911 chr12 133851895 + 33151123 33151593 L1PA3long 6157 + 5687 6157 65528 470 chain 11656 chr12 133851895 + 33151897 33152120 L1PB1 5432 + 5221 5422 153665 15 1 0 45 1 0 12 16 5 10 1 0 19 9 6 13 2 0 24 1 0 21 1 0 13 1 0 18 chain 212100 chr12 133851895 + 33166214 33168598 L1PA4 6152 + 3755 6139 18352 643 0 2 229 1 0 247 9 8 287 0 1 837 2 1 129 chain 25050 chr12 133851895 + 33169134 33169500 THE1B 368 + 0 368 104545 168 1 0 24 5 1 7 1 0 98 23 31 39 chain 124649 chr12 133851895 + 33175118 33176585 SVA_C 1631 - 13 1611 29488 466 0 1 120 14 13 10 6 5 99 8 53 27 0 40 255 0 39 434 0 3 12 0 5 16 chain 46964 chr12 133851895 + 33184686 33185295 L1PBa 3878 - 2265 2876 61237 74 2 1 89 0 2 84 7 8 353 chain 116840 chr12 133851895 + 33186011 33187422 LTR12C 1709 - 10 1701 32183 4 1 0 280 7 10 100 5 4 73 0 4 106 4 2 4 1 0 104 0 278 722 chain 2886 chr12 133851895 + 33192358 33192391 MLT1D-int 1367 - 1316 1349 227258 33 chain 5888 chr12 133851895 + 33194671 33194751 MADE1 96 + 0 96 186291 43 1 17 36 chain 77001 chr12 133851895 + 33208268 33209316 MER11C 1089 + 0 1063 44967 247 0 9 57 0 4 69 1 0 177 42 41 86 1 5 4 1 0 38 0 1 125 0 1 56 1 0 13 2 1 103 0 1 25 chain 40230 chr12 133851895 + 33220531 33221079 L1PA7 6471 - 12 532 68984 132 36 0 19 0 1 41 0 2 131 1 2 95 0 4 93 chain 21511 chr12 133851895 + 33221151 33221412 L1PBa 3878 + 1082 1343 122099 261 chain 416197 chr12 133851895 + 33222693 33228041 L1PB1 5432 - 12 5399 9637 16 1 0 13 1 0 14 8 7 24 2 0 8 16 13 28 14 1 15 1 0 45 2 1 16 1 0 61 4 0 12 1 0 8 1 0 24 1 0 7 1 4 474 1 0 16 0 4 74 0 2 157 0 8 376 1 0 41 0 1 124 0 1 123 3 1 98 7 5 74 0 1 306 0 2 9 1 0 13 0 18 71 0 2 149 0 17 94 1 0 16 1 0 76 0 1 256 2 1 113 0 4 213 1 0 160 5 10 443 0 4 134 0 2 6 4 6 788 0 1 62 3 4 159 0 1 328 1 2 19 chain 109388 chr12 133851895 + 33228098 33229596 LTR12C 1709 + 0 1702 34347 212 5 7 72 4 5 42 0 43 76 19 17 130 11 13 43 0 119 58 1 0 42 2 0 6 0 1 4 1 0 181 0 47 90 27 20 390 12 14 70 chain 4617 chr12 133851895 + 33233737 33233806 L1MA8 2339 - 144 211 199430 33 5 3 31 chain 40241 chr12 133851895 + 33242715 33243353 HERVH-int 3825 - 2919 3825 68959 126 0 265 25 2 1 14 61 65 66 26 25 46 17 18 255 chain 65492 chr12 133851895 + 33250262 33251304 L1PB1 5432 + 4412 5424 50343 85 0 7 92 7 9 23 3 0 77 0 2 53 7 16 270 1 2 4 1 0 51 29 11 24 1 0 9 30 23 50 2 1 16 1 0 43 1 0 23 18 9 15 8 5 14 3 1 23 1 0 21 4 3 10 1 0 16 1 0 4 chain 481863 chr12 133851895 + 33255216 33261381 L1PA6 6164 - 2 6162 7661 8 2 0 16 1 2 36 4 1 117 13 11 637 0 1 1510 0 1 300 0 1 330 0 1 183 0 1 299 13 8 61 1 6 306 0 1 872 7 0 196 0 3 5 68 74 131 0 1 5 1 0 74 0 25 120 17 0 248 50 49 12 2 1 312 0 1 77 26 12 105 chain 111931 chr12 133851895 + 33261390 33262723 L1P2 5180 + 1836 3177 33683 265 0 1 101 3 5 351 0 1 187 0 1 420 0 3 6 chain 538589 chr12 133851895 + 33294707 33300846 L1PA4 6152 - 9 6140 3054 1896 0 1 1754 8 0 1256 1 0 1224 chain 38610 chr12 133851895 + 33304018 33305076 MER9a3 513 - 0 513 71279 78 0 1 97 0 21 296 0 1 3 568 0 16 chain 35805 chr12 133851895 + 33304588 33305058 MER9a3 513 - 21 493 75125 57 0 1 176 3 2 64 12 13 68 0 1 90 chain 73878 chr12 133851895 + 33305850 33306847 MER11A 1151 + 9 1136 46573 46 0 99 45 2 0 93 12 8 24 0 2 62 0 1 39 1 2 13 0 1 87 7 0 9 0 7 12 1 0 303 3 0 5 0 35 44 11 13 126 7 6 45 chain 466312 chr12 133851895 + 33316614 33323142 L1PA7 6471 + 699 6447 8178 147 1 0 555 6 4 243 4 14 111 6 5 10 0 1 4 1 0 838 2 1 468 0 4 161 0 3 50 794 0 34 4 5 140 1 0 20 0 1 63 0 5 271 0 1 136 1 0 423 0 2 103 40 0 84 0 2 341 0 1 34 1 2 169 7 25 103 1 8 330 1 0 54 0 2 270 1 0 277 0 5 218 chain 50616 chr12 133851895 + 33319451 33320009 L1PA3long 6157 - 0 558 58568 558 chain 54825 chr12 133851895 + 33329122 33329761 L1PA4 6152 - 6 617 55819 67 28 0 544 chain 12328 chr12 133851895 + 33338092 33338284 L1PA7 6471 - 1 899 150901 70 22 725 51 0 3 49 chain 3372 chr12 133851895 + 33341802 33341843 MLT1D 503 + 462 503 217638 41 chain 54167 chr12 133851895 + 33352019 33352734 LTR12 884 + 0 860 56249 25 1 0 30 0 107 194 0 22 283 13 0 67 13 43 89 chain 20363 chr12 133851895 + 33352758 33352994 LTR12_ 688 + 452 688 126023 236 chain 18259 chr12 133851895 + 33360672 33360932 THE1C 375 - 98 355 132178 57 6 7 31 0 1 43 10 8 5 3 0 105 chain 61629 chr12 133851895 + 33366247 33367231 L1MA3 4352 - 0 949 52067 12 19 15 11 1 0 25 4 3 4 1 0 22 2 0 44 10 12 25 1 0 67 1 0 8 37 11 91 2 0 249 43 44 25 0 1 280 chain 222282 chr12 133851895 + 33371264 33374820 L1PA13 3608 - 69 3522 17739 4 1 0 14 6 0 3 1 0 16 6 1 10 6 3 21 1 0 19 9 5 46 10 6 56 1 0 62 2 0 46 3 14 53 1 0 32 1 0 145 53 54 45 1 0 163 1 0 79 1 2 201 33 5 8 7 0 5 0 3 83 1 0 87 0 1 254 1 0 4 14 6 15 35 20 228 4 5 136 10 14 37 19 23 252 3 10 37 28 22 5 0 1 71 2 1 57 1 0 418 2 0 23 0 1 74 129 117 29 1 0 98 2 0 71 28 17 24 3 0 12 2 1 26 7 4 21 6 4 19 1 0 4 chain 2299 chr12 133851895 + 33372384 33372416 L1PA13 3608 - 1933 1965 216240 32 chain 548595 chr12 133851895 + 33380505 33386641 L1PA3long 6157 + 6 6154 1628 603 5 1 264 0 2 1383 0 10 123 0 4 301 1 0 352 5 6 133 0 1 150 1 0 2815 chain 68403 chr12 133851895 + 33393405 33394395 LTR12D 1347 - 12 942 49087 253 1 0 11 103 0 23 1 0 24 4 0 180 4 5 121 3 20 131 0 31 131 chain 132251 chr12 133851895 + 33395528 33396995 L1PA3long 6157 - 0 1469 27575 171 0 2 1296 chain 122920 chr12 133851895 + 33396995 33398364 L1PA3long 6157 + 3286 4682 30006 227 0 1 525 0 26 617 chain 48702 chr12 133851895 + 33401839 33402446 PABL_A 660 - 0 660 59956 23 4 5 420 0 39 81 1 10 27 0 4 51 chain 15050 chr12 133851895 + 33411429 33411772 THE1C 375 + 0 334 141175 27 1 0 20 72 70 13 2 1 48 25 27 108 13 6 14 chain 33429 chr12 133851895 + 33411813 33412287 THE1C-int 1605 + 0 483 78516 25 0 3 102 1 0 88 0 1 23 1 0 89 0 1 23 2 1 89 16 23 15 chain 100945 chr12 133851895 + 33422787 33423918 L1PA3long 6157 - 1 1141 36527 137 0 7 700 0 2 294 chain 42257 chr12 133851895 + 33423918 33424385 L1PA3long 6157 + 4564 5031 65984 467 chain 47845 chr12 133851895 + 33454152 33454669 L1PA3long 6157 - 0 517 60595 517 chain 47151 chr12 133851895 + 33460098 33460742 MER4A1_ 611 + 0 611 61087 119 21 7 66 20 0 405 0 1 13 chain 5392 chr12 133851895 + 33462038 33462107 LTR48B 642 + 540 608 191073 4 1 0 64 chain 529390 chr12 133851895 + 33484868 33490808 L1PA3long 6157 + 81 6156 4258 71 17 18 572 1 0 34 0 128 1530 0 3 677 0 1 844 3 4 901 0 1 419 0 1 538 0 1 328 1 0 4 chain 29568 chr12 133851895 + 33499101 33499411 AluYf4 310 + 0 310 86346 310 chain 6226 chr12 133851895 + 33500407 33500499 L1PA7 6471 + 4258 4348 183351 16 10 8 66 chain 174100 chr12 133851895 + 33500499 33502611 L1PA7 6471 + 4351 6459 21584 604 2 1 152 3 1 87 1 0 48 1 0 133 0 3 239 1 2 273 0 2 119 5 0 121 0 1 128 17 15 40 0 1 138 chain 22518 chr12 133851895 + 33502629 33502905 MER41A 554 + 176 466 117952 172 0 1 42 0 12 27 0 1 35 chain 16721 chr12 133851895 + 33514083 33514279 AluSp 311 - 15 211 136336 196 chain 23676 chr12 133851895 + 33547750 33548026 AluY 311 + 9 286 112172 36 0 1 240 chain 4846 chr12 133851895 + 33565468 33565546 MADE1 96 + 0 94 196827 33 9 25 36 chain 185837 chr12 133851895 + 33565546 33567696 L1P1 4361 + 906 3063 20429 12 0 1 289 10 11 1509 0 5 330 chain 509072 chr12 133851895 + 33615391 33621814 L1PA7 6471 + 0 6470 6238 121 0 27 94 5 15 115 15 1 27 0 3 25 0 8 13 6 11 211 29 30 51 1 0 461 0 4 538 1 0 4 0 1 404 0 2 353 0 2 120 21 2 285 0 1 336 6 20 203 1 0 77 6 5 41 5 6 1052 0 8 93 1 4 12 2 0 169 1 0 666 0 3 344 0 1 145 16 16 146 9 5 26 1 3 6 2 0 149 3 0 5 chain 5670 chr12 133851895 + 33630838 33630908 MLT1A1 405 + 297 367 188393 70 chain 513254 chr12 133851895 + 33645202 33652021 L1PA7 6471 + 0 6468 5859 11 2 0 279 13 12 587 20 20 651 0 2 540 0 2 5 2 0 420 9 10 47 0 1 45 10 0 67 0 4 485 64 8 157 0 8 24 0 1 98 10 9 9 0 3 44 0 4 17 6 7 21 1 0 411 1 0 70 0 3 7 311 9 114 27 0 105 12 15 401 0 1 114 2 1 448 2 1 126 1 0 4 0 1 36 0 1 148 0 4 130 0 1 110 0 3 458 10 21 127 chain 51231 chr12 133851895 + 33666591 33667376 L1PA14 3548 - 217 985 58173 110 6 5 79 1 0 6 2 0 5 20 16 41 6 7 57 18 14 40 1 0 12 3 1 20 1 0 221 5 3 131 chain 519037 chr12 133851895 + 33673704 33679799 L1PA6 6164 + 23 6161 5265 213 0 2 279 0 2 50 1 0 282 0 2 570 8 13 298 0 1 477 0 2 117 1 2 58 0 4 193 0 3 236 0 7 2284 0 9 40 0 5 492 0 1 496 chain 12354 chr12 133851895 + 33690608 33690792 L1PA7 6471 - 16 210 150818 47 8 18 68 2 1 22 1 2 36 chain 14296 chr12 133851895 + 33692963 33693148 L1PA7 6471 + 6261 6455 143574 116 2 1 24 0 10 43 chain 12795 chr12 133851895 + 33699459 33699628 L1PA16 3655 + 3414 3584 149075 67 0 4 93 3 0 6 chain 3084 chr12 133851895 + 33703038 33703071 L1ME1 1623 - 140 173 223243 33 chain 24564 chr12 133851895 + 33703140 33703499 THE1B 368 + 0 368 107174 44 5 20 105 29 23 176 chain 113229 chr12 133851895 + 33703499 33705028 THE1B-int 1605 + 0 1595 33304 385 9 19 28 8 33 54 1 0 613 31 56 25 9 15 195 4 5 71 1 0 4 0 1 91 chain 25298 chr12 133851895 + 33705047 33705389 THE1B 368 + 10 368 103239 34 0 15 71 0 1 41 1 0 20 2 0 91 3 6 79 chain 19331 chr12 133851895 + 33761902 33762258 THE1B 368 + 2 365 129141 106 26 27 41 36 33 4 0 1 10 8 16 66 7 6 30 0 1 22 chain 17562 chr12 133851895 + 33763172 33763392 L1PA7 6471 - 1 220 134093 154 1 0 65 chain 6660 chr12 133851895 + 33765441 33765519 L1PA7 6471 + 5524 5602 179999 78 chain 43760 chr12 133851895 + 33765529 33766051 L1PA7 6471 + 5614 6136 64497 522 chain 27733 chr12 133851895 + 33766051 33766384 L1PA7 6471 + 6137 6470 93926 333 chain 19933 chr12 133851895 + 33772435 33772755 THE1B 368 + 2 340 127354 106 15 13 48 1 0 30 22 44 63 3 2 32 chain 23199 chr12 133851895 + 33785266 33785548 AluY 311 + 34 311 114681 33 7 0 197 0 2 45 chain 9431 chr12 133851895 + 33790350 33790466 LTR9B 643 - 82 198 163400 116 chain 17243 chr12 133851895 + 33800545 33800805 L1PA7 6471 - 3 264 134945 9 3 0 10 9 10 123 7 8 81 2 4 16 chain 5112 chr12 133851895 + 33802212 33802563 MLT1A0 366 + 0 366 193958 26 136 148 20 68 70 17 48 49 36 chain 32160 chr12 133851895 + 33805594 33805963 L1PA5 6144 - 9 370 80597 164 8 0 197 chain 8169 chr12 133851895 + 33809628 33809843 MER34B-int 733 - 226 379 170126 8 3 0 14 2 0 11 11 7 59 56 0 30 1 4 20 chain 15596 chr12 133851895 + 33872200 33872383 L1PA5 6144 + 5953 6135 139596 78 1 0 104 chain 426191 chr12 133851895 + 33879096 33885035 L1PA8A 6298 - 16 5454 9392 96 0 1 152 0 1 203 11 9 151 0 1 682 0 2 1112 0 1 165 18 13 316 0 1 183 4 9 355 492 0 144 1 0 115 0 1 51 15 8 95 5 3 5 0 2 170 0 1 123 0 1 168 0 3 501 0 3 140 0 1 146 40 37 80 40 27 160 chain 37065 chr12 133851895 + 33882548 33883036 LTR12F 595 - 0 595 73437 174 6 12 100 0 1 66 0 105 33 6 1 103 chain 248125 chr12 133851895 + 33890857 33893530 L1PA2 6032 + 3352 6026 16357 1820 0 1 853 chain 2792 chr12 133851895 + 33909512 33909557 L1MC4 1079 - 373 415 228858 29 4 1 12 chain 542141 chr12 133851895 + 33925801 33931949 L1PA4 6152 + 1 6152 2479 691 1 0 686 0 2 1790 1 0 6 2 1 2121 0 4 850 chain 107748 chr12 133851895 + 33942148 33943746 THE1B-int 1605 - 8 1605 34791 700 13 4 192 21 19 131 4 0 6 0 4 22 40 40 20 18 81 268 94 41 69 chain 67161 chr12 133851895 + 33946594 33947319 L1PA2 6032 + 5307 6032 49583 725 chain 27533 chr12 133851895 + 33949402 33949768 THE1C-int 1605 + 0 422 94568 16 6 7 86 0 55 258 chain 496081 chr12 133851895 + 33949784 33956220 L1PA7 6471 - 2 6468 7064 10 2 0 86 3 0 57 7 8 208 9 11 93 0 2 279 0 3 8 9 11 30 4 0 7 8 13 9 0 1 5 0 6 22 1 7 148 1 2 4 1 0 483 2 1 207 0 1 167 1 2 569 4 0 44 1 8 344 16 17 43 0 4 20 15 0 340 1 9 76 0 4 207 0 4 248 25 0 184 0 1 170 11 1 222 5 6 304 1 0 73 23 22 208 0 2 174 6 7 53 0 4 50 0 20 222 1 4 10 6 7 282 1 2 205 7 11 394 chain 26675 chr12 133851895 + 33960275 33960669 MLT2A1 477 - 0 477 97411 39 4 0 10 3 43 180 0 1 23 14 12 18 14 13 48 0 49 41 chain 15877 chr12 133851895 + 33962844 33963034 L1PA7 6471 - 14 206 138715 146 1 3 43 chain 6224 chr12 133851895 + 33976546 33976615 L1PA4 6152 + 6077 6146 183372 69 chain 97308 chr12 133851895 + 33990791 33991919 L1PA5 6144 + 5016 6143 37481 278 1 0 78 6 7 609 1 0 155 chain 536412 chr12 133851895 + 34001067 34007086 L1PA3long 6157 + 2 6156 3393 151 1 2 621 0 128 370 1 2 1912 0 1 67 0 4 1818 0 1 228 1 0 849 chain 20035 chr12 133851895 + 34025553 34025774 L1PA4 6152 - 16 238 127026 97 0 1 124 chain 21375 chr12 133851895 + 34029231 34029484 AluSp 311 + 50 303 122601 253 chain 106635 chr12 133851895 + 34032304 34033717 L1PA10 4194 - 1730 3148 34994 43 0 1 14 8 10 63 0 1 106 0 4 107 4 5 375 0 3 6 4 1 98 0 2 94 1 0 236 5 0 249 chain 119363 chr12 133851895 + 34033717 34035384 L1PA10 4194 + 2478 4150 31274 42 14 16 75 13 11 30 6 5 49 39 41 162 0 7 43 1 0 4 9 8 152 0 2 5 2 0 266 1 0 503 0 3 216 3 0 32 chain 14223 chr12 133851895 + 34051282 34051468 L1PA7 6471 + 6283 6468 143812 114 1 2 60 2 0 9 chain 20234 chr12 133851895 + 34051807 34052049 L1PA7 6471 + 6227 6469 126428 242 chain 107187 chr12 133851895 + 34054324 34055559 L1PA5 6144 + 4906 6139 34918 108 1 0 34 0 1 289 0 1 484 6 4 304 1 0 8 chain 15069 chr12 133851895 + 34059133 34059294 L1PA4 6152 - 298 459 141113 161 chain 13609 chr12 133851895 + 34061830 34062015 L1P3 4156 - 1359 1546 145938 135 0 1 27 6 7 17 chain 51899 chr12 133851895 + 34065505 34066143 L1PA6 6164 - 2 647 57685 11 1 0 303 3 4 51 0 1 142 0 6 127 chain 418193 chr12 133851895 + 34067927 34073569 L1PA8 5853 - 20 5803 9581 61 89 72 11 2 1 9 5 4 67 2 0 38 0 77 10 11 5 5 0 3 457 0 4 562 4 1 76 0 1 35 1 0 218 0 1 682 0 1 199 0 1 273 0 4 67 0 1 298 7 15 556 1 0 179 0 1 91 9 10 610 6 8 290 7 9 5 2 0 360 2 23 92 86 165 57 78 46 22 chain 176069 chr12 133851895 + 34081220 34083389 L1P1 4361 + 4 2199 21325 117 0 14 684 28 29 390 0 1 340 0 9 415 1 2 194 chain 522365 chr12 133851895 + 34083389 34089498 L1PA5 6144 + 31 6143 4918 189 0 1 386 22 0 383 0 1 194 0 1 247 0 1 486 0 1 369 4 11 5 3 0 191 0 1 543 0 1 128 1 0 88 0 2 650 0 1 1235 0 5 146 0 4 654 0 1 31 0 2 154 chain 24463 chr12 133851895 + 34101719 34102072 THE1B 368 + 0 368 107741 97 9 26 49 10 9 118 0 1 6 8 6 56 chain 21153 chr12 133851895 + 34102072 34102339 THE1B-int 1605 + 0 268 123363 167 4 5 96 chain 18461 chr12 133851895 + 34115982 34116211 MER75 514 - 2 234 131610 22 0 2 175 3 4 29 chain 58985 chr12 133851895 + 34119157 34119943 LTR12 884 + 0 884 53407 163 6 22 37 0 41 9 0 41 64 2 0 34 0 1 27 8 7 128 3 6 129 1 0 175 chain 8833 chr12 133851895 + 34122552 34122646 L1PA3long 6157 - 247 341 166479 94 chain 19385 chr12 133851895 + 34122646 34122859 L1PA3long 6157 + 5918 6131 128991 213 chain 77050 chr12 133851895 + 34124341 34125262 L1PA7 6471 - 1122 2052 44942 454 0 1 88 0 2 132 0 4 145 1 3 101 chain 88621 chr12 133851895 + 34125264 34126358 L1PA7 6471 + 5359 6459 40135 264 0 6 469 0 2 111 0 2 63 12 7 113 0 1 62 chain 126120 chr12 133851895 + 34128327 34129757 L1P1 4361 - 318 1753 29060 136 0 1 656 0 4 638 chain 13297 chr12 133851895 + 34129757 34129902 L1PA3long 6157 + 5700 5845 147093 145 chain 27714 chr12 133851895 + 34129902 34130213 L1PA3long 6157 + 5846 6157 93993 311 chain 7048 chr12 133851895 + 34135403 34135489 HY3 101 - 3 89 177120 86 chain 14953 chr12 133851895 + 34156343 34156708 THE1B 368 - 0 360 141465 56 1 2 7 2 0 14 5 6 45 143 138 92 chain 14305 chr12 133851895 + 34184723 34184925 MER30 238 + 26 238 143546 37 2 0 35 10 0 19 0 22 99 chain 42570 chr12 133851895 + 34200993 34201590 LTR14B 630 + 27 624 65938 194 1 2 66 0 7 51 1 8 8 0 14 14 0 9 35 38 0 189 chain 235739 chr12 133851895 + 34202954 34206362 L1PB1 5432 + 956 5404 16993 181 1 0 71 5 7 133 0 1 46 1 0 7 8 0 11 13 5 22 0 1013 40 1 0 9 0 1 122 2 5 107 12 14 91 2 0 87 0 4 463 102 4 17 24 22 239 3 4 44 1 0 5 1 0 255 0 1 198 23 30 270 8 7 134 3 0 48 0 6 302 29 177 8 2 0 53 2 1 16 1 0 44 1 0 10 32 22 14 11 8 13 2 0 22 1 0 21 1 0 13 chain 78923 chr12 133851895 + 34217915 34219745 L1PA4 6152 + 6 1830 4683 454 6 0 1370 chain 536172 chr12 133851895 + 34219760 34225780 L1PA3long 6157 - 0 6157 3423 753 1 4 1712 0 1 868 0 1 121 1 2 1647 0 2 142 0 128 621 1 2 153 chain 185835 chr12 133851895 + 34225781 34230090 L1PA4 6152 + 1830 6151 4683 2367 0 1 955 0 5 36 0 1 106 0 3 73 0 1 630 0 1 142 chain 33754 chr12 133851895 + 34231522 34231897 L1PA5 6144 + 5516 5891 78014 375 chain 20816 chr12 133851895 + 34231899 34232151 L1PA5 6144 + 5892 6144 124549 252 chain 22935 chr12 133851895 + 34232801 34233093 AluSx4 309 + 11 302 115933 264 5 4 23 chain 526740 chr12 133851895 + 34236182 34242262 L1PA4 6152 + 7 6143 4525 573 1 0 439 0 1 40 0 2 168 0 1 5 1 0 247 0 3 1629 0 1 46 0 3 6 5 29 180 0 10 289 0 4 368 0 1 1249 0 2 177 0 4 167 0 2 490 chain 10101 chr12 133851895 + 34246482 34246598 L1PA2 6032 + 5914 6030 160082 116 chain 191204 chr12 133851895 + 34253055 34255255 HERV17-int 4347 + 2121 4347 19942 141 0 3 108 0 3 764 1 2 404 1 15 65 0 5 716 chain 25467 chr12 133851895 + 34255570 34255891 LTR17 781 + 1 326 102365 6 0 4 110 0 9 30 0 1 138 10 0 27 chain 78518 chr12 133851895 + 34263146 34264047 MER11D 897 + 0 891 44259 281 1 0 290 20 11 309 chain 16190 chr12 133851895 + 34264415 34264622 AluY 311 + 82 285 137781 36 5 0 12 1 2 153 chain 33828 chr12 133851895 + 34270690 34271173 LTR15 485 - 10 485 77895 14 4 5 15 30 20 24 4 2 114 0 4 47 0 1 78 0 2 21 4 0 128 chain 20864 chr12 133851895 + 34276350 34276578 L1PA2 6032 - 8 236 124413 228 chain 33363 chr12 133851895 + 34280238 34280715 LTR15 485 - 10 485 78633 15 6 7 14 7 0 42 3 1 10 3 2 56 0 1 43 1 5 102 0 2 23 1 3 22 2 0 127 chain 179453 chr12 133851895 + 34280716 34283455 L1PB1 5432 + 2526 5103 21038 314 4 5 63 15 16 61 1 2 90 15 4 155 0 46 191 18 21 238 22 0 70 198 0 41 7 6 100 7 8 40 1 2 88 0 1 137 0 1 402 8 5 143 1 0 8 3 23 8 8 0 221 12 18 49 chain 534963 chr12 133851895 + 34286276 34293072 L1PA4 6152 + 6 6151 3595 701 1 2 522 0 3 481 0 1 230 1 0 432 0 1 677 0 1 242 307 0 205 39 0 156 0 1 660 312 0 1830 chain 28861 chr12 133851895 + 34290937 34291242 AluYa5 310 - 5 310 89615 305 chain 172842 chr12 133851895 + 34297169 34299852 L1PA7 6471 + 4102 6467 21727 167 5 0 99 13 16 103 0 1 33 0 4 173 1 2 76 0 3 78 9 10 28 30 26 254 1 5 35 0 1 4 1 0 394 0 3 93 3 5 117 0 1 179 0 4 94 0 1 95 0 5 2 349 0 7 0 7 240 chain 6241 chr12 133851895 + 34328810 34328888 L1MA2 4263 - 205 283 183238 78 chain 92161 chr12 133851895 + 34333207 34334237 LTR5A 1029 - 0 1029 38915 882 1 0 147 chain 21917 chr12 133851895 + 34345682 34345922 L1PA2 6032 - 5 245 120557 240 chain 63849 chr12 133851895 + 34349825 34350642 L1PB1 5432 - 759 1554 51078 47 5 0 118 22 3 298 0 2 327 chain 29233 chr12 133851895 + 34351824 34352194 LTR66 600 + 2 403 87892 123 0 27 15 0 4 232 chain 6908 chr12 133851895 + 34372330 34372429 LSU-rRNA_Hsa 377 - 17 114 178134 59 9 7 31 chain 43991 chr12 133851895 + 34380995 34381504 MER9a1 513 + 0 513 64215 58 0 4 451 chain 35043 chr12 133851895 + 34418479 34418964 LTR7 482 + 0 469 76126 94 0 3 17 52 1 115 0 31 28 0 1 179 chain 300547 chr12 133851895 + 34418979 34422972 HERVH-int 3825 + 0 3825 13391 328 6 5 5 0 1 193 5 0 38 3 2 8 1 0 8 1 0 16 28 0 8 9 26 12 0 20 28 43 0 56 2 1 6 0 1 17 1 0 59 0 3 307 0 2 5 2 0 275 9 0 39 2 1 215 4 31 370 9 14 333 4 7 257 1 5 228 198 40 45 1 0 574 7 9 227 chain 34782 chr12 133851895 + 34426692 34427185 LTR7 482 + 0 475 76502 173 51 0 52 0 1 4 0 31 28 6 7 179 chain 76645 chr12 133851895 + 34462773 34463853 LTR12C 1709 + 330 1709 45144 132 13 12 192 0 1 69 0 237 65 0 88 89 44 13 313 1 0 38 10 11 29 24 27 32 0 2 29 chain 74041 chr12 133851895 + 34578442 34579305 L1PA4 6152 - 1 891 46489 43 0 25 564 0 1 145 1 2 110 chain 355121 chr12 133851895 + 34583932 34588259 L1P1 4361 + 1 4317 11470 520 2 1 16 2 1 35 1 0 113 8 0 4 0 1 593 0 9 8 22 13 1681 0 1 206 1 0 211 2 1 440 0 2 293 1 0 155 1 0 12 chain 30960 chr12 133851895 + 34598972 34599329 L1PA2 6032 - 0 362 82585 17 0 5 340 chain 57024 chr12 133851895 + 34599329 34599949 L1PA2 6032 + 5042 5662 54519 620 chain 15630 chr12 133851895 + 34606885 34607072 L1PA5 6144 + 5957 6144 139490 187 chain 17513 chr12 133851895 + 34615678 34615899 HERVK11-int 2540 - 515 735 134231 190 1 0 30 chain 512281 chr12 133851895 + 34616984 34623123 L1PA4 6152 - 1 6146 5943 2005 7 8 205 5 4 588 10 7 387 0 2 743 0 2 655 0 1 300 1 2 84 0 1 187 1 2 255 4 5 702 chain 528813 chr12 133851895 + 34629246 34635390 L1PA3long 6157 + 6 6157 4325 424 0 1 4 1 0 134 0 5 122 4 11 9 7 0 260 0 1 1349 1 0 235 4 0 518 0 1 134 0 1 136 0 2 160 2 3 994 0 1 1646 chain 17395 chr12 133851895 + 34661609 34661821 L1PA2 6032 + 5808 6027 134520 58 8 15 146 chain 71218 chr12 133851895 + 34674043 34675080 MER11C 1089 + 0 1063 47840 240 6 15 58 0 4 217 62 61 95 0 4 5 1 0 38 0 1 28 8 16 15 1 2 42 31 32 190 chain 77315 chr12 133851895 + 34680587 34681835 HERVK11-int 2540 + 1044 2235 44827 21 2 0 65 10 9 23 68 54 12 1 0 11 26 15 36 21 1 208 23 22 189 26 21 104 1 0 183 13 12 205 chain 256639 chr12 133851895 + 34728217 34731290 L1PA4 6152 + 3056 6148 15901 109 0 1 531 0 1 458 1 0 4 0 1 184 3 0 11 7 11 240 1 18 582 1 0 941 chain 54740 chr12 133851895 + 34733500 34734107 L1PA3long 6157 - 749 1356 55757 607 chain 66297 chr12 133851895 + 34734107 34734868 L1PA3long 6157 + 5395 6157 49954 193 0 1 568 chain 529410 chr12 133851895 + 34761444 34767589 L1PA3long 6157 - 0 6153 4256 172 0 1 854 0 1 954 1 2 4 1 0 271 0 2 1206 1 0 371 1 0 605 1 0 11 0 1 256 4 0 26 0 9 669 2 1 122 0 1 5 13 10 26 0 4 569 chain 402120 chr12 133851895 + 34774753 34780279 HERVK-int 6823 - 303 5721 10023 11 7 5 26 82 64 28 2 0 13 3 1 22 208 131 19 1 0 6 22 16 21 1 0 10 2 1 74 7 5 5 1 0 5 3 0 51 1 0 123 1 0 33 1 0 102 1 0 23 1 0 96 3 0 101 2 1 12 1 0 492 0 2 29 0 1 36 1 0 837 5 6 436 0 7 67 0 1 83 9 13 77 0 4 515 13 11 5 0 2 339 0 2 427 0 1 10 1 4 272 1 0 7 7 2 212 7 8 4 1 0 147 26 25 329 chain 105161 chr12 133851895 + 34782710 34783874 L1PA3long 6157 - 245 1409 35462 521 0 1 519 1 0 123 chain 2065 chr12 133851895 + 34783890 34783912 L1PA3long 6157 + 3946 3968 238022 22 chain 65214 chr12 133851895 + 34783912 34784647 L1PA3long 6157 + 4012 4747 50465 735 chain 503630 chr12 133851895 + 34792479 34798595 L1PA4 6152 + 12 6143 6625 532 5 2 473 0 1 212 4 5 8 0 1 464 0 1 359 1 4 821 0 1 305 0 1 84 0 1 229 1 0 205 1 2 163 4 7 32 0 1 360 0 2 238 0 1 856 1 2 758 chain 528680 chr12 133851895 + 34820018 34826038 L1PA3long 6157 - 1 6152 4338 629 0 1 166 0 1 44 0 4 1456 0 3 1161 0 1 1786 0 20 6 0 108 405 0 1 91 9 0 119 13 0 14 0 14 121 chain 189820 chr12 133851895 + 37885006 37887212 L1PA5 6144 - 29 2225 20070 126 1 0 695 12 0 144 9 7 703 0 1 94 0 4 422 chain 9889 chr12 133851895 + 37905686 37905817 MER4E 760 - 0 128 161126 89 3 0 39 chain 22022 chr12 133851895 + 37908368 37908644 AluSp 311 + 20 296 120132 152 0 1 4 1 0 119 chain 4323 chr12 133851895 + 37961928 37961980 MER21B 843 + 20 72 202931 52 chain 5818 chr12 133851895 + 37973231 37973301 L1MB8 1703 + 1468 1538 186976 70 chain 10350 chr12 133851895 + 38043896 38044021 L1PA3long 6157 - 2 127 158905 125 chain 510432 chr12 133851895 + 38054576 38060542 L1PA3long 6157 - 0 6153 6126 339 1 0 595 4 5 830 0 189 1070 3 1 809 1 0 282 5 6 2027 chain 519609 chr12 133851895 + 38075418 38081562 L1PA3long 6157 + 6 6154 5201 345 5 6 924 0 1 1044 2 0 524 1 0 22 0 1 640 1 2 796 1 0 995 1 2 832 0 3 11 chain 500934 chr12 133851895 + 38155509 38161412 L1PA3long 6157 + 6 6154 6789 2119 0 1 199 0 1 491 2 1 4 0 1 96 4 0 759 11 12 254 0 1 28 0 7 19 14 7 85 0 2 188 4 0 137 0 1 216 1 0 71 8 237 368 1 0 216 0 19 608 chain 117053 chr12 133851895 + 38171062 38172395 L1PA3long 6157 - 17 1356 32108 749 0 1 76 0 4 191 0 1 317 chain 55379 chr12 133851895 + 38172395 38173029 L1PA3long 6157 + 4146 4780 55472 634 chain 29798 chr12 133851895 + 38178748 38179063 AluYb8 318 - 3 318 85444 315 chain 515852 chr12 133851895 + 38180718 38186856 L1PA4 6152 + 6 6151 5589 260 0 1 313 1 0 159 8 7 397 0 2 97 0 2 957 0 2 359 0 1 139 1 6 410 0 5 85 0 1 90 28 0 941 0 1 1284 0 1 211 1 14 71 0 3 326 chain 162717 chr12 133851895 + 38207523 38209703 SVA_F 1814 - 0 1808 22975 326 0 15 292 127 0 11 1 0 32 274 0 176 1 15 12 1 2 927 chain 4124 chr12 133851895 + 38208146 38208267 SVA_F 1814 - 688 809 102554 121 chain 6135 chr12 133851895 + 38208312 38208492 SVA_F 1814 - 867 1167 102554 10 1 2 56 0 1 13 0 11 7 11 119 64 5 4 13 chain 3133 chr12 133851895 + 38208505 38208538 SVA_F 1814 - 645 678 222318 33 chain 3825 chr12 133851895 + 38208539 38208584 SVA_F 1814 - 678 724 210001 14 0 1 31 chain 129671 chr12 133851895 + 38217192 38218657 L1PA3long 6157 - 15 1480 28165 842 1 0 422 0 1 200 chain 55867 chr12 133851895 + 38218663 38219288 L1PA3long 6157 + 4033 4658 55201 625 chain 12989 chr12 133851895 + 38255183 38255472 L1PB1 5432 - 8 274 148289 4 1 0 19 1 0 10 1 0 26 0 1 18 2 0 14 8 5 15 33 22 9 1 0 40 11 10 10 5 3 4 0 1 46 2 0 9 chain 30553 chr12 133851895 + 38255571 38255908 L1PA2 6032 - 5 342 83334 337 chain 70729 chr12 133851895 + 38259392 38260201 L1PA3long 6157 - 2859 3668 48051 809 chain 43373 chr12 133851895 + 38260201 38260699 L1PA3long 6157 + 3313 3811 64859 498 chain 189760 chr12 133851895 + 38260699 38262913 L1PA3long 6157 + 3929 6157 20078 125 0 1 395 6 20 607 0 1 164 0 1 57 2 0 119 2 1 737 chain 28622 chr12 133851895 + 38284168 38284468 AluYa5 310 - 10 310 90649 300 chain 507021 chr12 133851895 + 38286216 38292344 L1PA4 6152 + 12 6151 6393 984 0 7 12 2 1 137 0 2 285 2 1 110 1 0 184 0 2 958 5 0 8 0 5 1342 1 0 201 0 1 6 1 0 895 0 5 143 3 1 694 0 1 154 chain 50496 chr12 133851895 + 38322258 38322845 L1PA3long 6157 + 5412 5999 58652 587 chain 13629 chr12 133851895 + 38322848 38323002 L1PA3long 6157 + 6003 6157 145862 154 chain 80645 chr12 133851895 + 38337270 38338229 L1PA4 6152 - 1527 2491 43324 273 0 4 506 5 6 175 chain 17833 chr12 133851895 + 38338229 38338458 L1PA4 6152 + 4648 4876 132889 17 2 1 210 chain 106331 chr12 133851895 + 38338466 38339691 L1PA4 6152 + 4883 6106 35175 411 2 0 812 chain 48144 chr12 133851895 + 38346267 38346798 L1PA2 6032 + 5501 6032 60365 531 chain 110879 chr12 133851895 + 38423607 38424982 HERV17-int 4347 - 134 1543 33975 91 3 4 77 4 37 240 2 0 19 0 3 595 1 0 343 chain 523308 chr12 133851895 + 38425241 38431370 L1PA4 6152 + 6 6148 4838 77 0 1 1236 0 1 101 0 5 222 0 1 375 0 1 294 1 0 832 0 1 12 0 1 17 1 0 127 4 5 194 1 0 1124 1 2 227 1 0 439 0 1 76 1 0 614 0 4 152 chain 97745 chr12 133851895 + 38454168 38455240 L1PA3long 6157 - 755 1827 37350 1072 chain 67517 chr12 133851895 + 38455240 38455982 L1PA3long 6157 + 5410 6152 49327 742 chain 16564 chr12 133851895 + 38461157 38461354 L1PA4 6152 + 5946 6143 136753 197 chain 2941 chr12 133851895 + 38462497 38462559 L1MB2 1706 + 122 186 226312 23 17 19 22 chain 86202 chr12 133851895 + 38462631 38463667 MER11C 1089 + 27 1073 41073 223 0 1 62 0 4 371 0 4 45 0 1 335 chain 148299 chr12 133851895 + 38465460 38467118 L1PA2 6032 - 2315 3973 24843 1658 chain 204939 chr12 133851895 + 38467118 38469425 L1PA2 6032 + 3716 6032 18861 252 0 5 1277 1 0 118 0 3 645 0 2 14 chain 24019 chr12 133851895 + 38472968 38473275 AluY 311 + 4 300 110216 129 21 10 157 chain 530186 chr12 133851895 + 38485137 38491259 L1PA4 6152 + 3 6135 4170 430 1 2 414 13 13 715 0 3 1888 1 2 160 0 1 100 0 1 1758 0 3 642 chain 77726 chr12 133851895 + 38491636 38493168 L1PA8 5853 + 4710 5849 44646 15 2 1 4 0 1 98 0 1 137 0 12 33 360 48 25 0 7 472 1 0 32 1 0 5 0 1 6 2 0 70 2 1 9 7 0 6 10 16 32 1 0 17 2 1 15 94 0 74 chain 8324 chr12 133851895 + 38506533 38506927 L1M1 2793 + 732 1112 169255 8 2 0 4 2 0 12 21 16 30 1 0 22 119 115 46 18 17 10 7 50 9 42 0 41 chain 3171 chr12 133851895 + 38512797 38512897 HAL1-2a_MD 234 - 92 213 221552 12 7 5 12 12 0 22 2 47 7 10 0 16 chain 70857 chr12 133851895 + 38516640 38517508 MER11D 897 + 0 897 47985 598 7 30 233 1 7 29 chain 37923 chr12 133851895 + 38522594 38523042 HERVK11D-int 613 + 153 600 72246 135 1 0 312 chain 69212 chr12 133851895 + 38523084 38523927 MER11D 897 + 31 897 48716 546 0 23 297 chain 44870 chr12 133851895 + 38538298 38538854 LTR14C 587 + 30 584 63209 141 2 0 325 2 1 5 0 1 81 chain 42362 chr12 133851895 + 38540203 38540704 MER9a1 513 + 12 513 66202 501 chain 5164 chr12 133851895 + 38563894 38563954 LTR66 600 - 540 600 193408 60 chain 60502 chr12 133851895 + 38565228 38566024 L1PB1 5432 + 3877 4673 52576 327 0 2 279 8 9 134 3 0 9 0 2 5 9 7 22 chain 17795 chr12 133851895 + 38579913 38580123 L1PA3long 6157 + 5948 6157 133430 54 1 0 155 chain 502358 chr12 133851895 + 38601132 38607134 L1PA5 6144 + 116 6143 6705 357 10 6 83 9 7 160 16 8 226 0 1 68 0 1 8 1 0 4 8 9 165 0 1 15 9 8 190 1 0 79 0 1 277 2 1 402 0 2 306 1 7 735 0 4 95 0 5 5 2 0 527 0 10 986 0 1 197 0 1 80 0 3 134 0 4 51 0 1 123 0 5 113 1 0 419 0 1 124 3 1 10 chain 7604 chr12 133851895 + 38609364 38609681 MLT1A 405 + 28 363 173520 20 75 84 21 79 84 49 31 35 42 chain 464252 chr12 133851895 + 38619321 38624793 L1PA4 6152 - 12 6150 8248 386 0 3 457 2 1 127 0 3 82 0 1 199 0 1 1033 0 30 725 0 627 413 0 1 836 15 16 159 1 0 62 10 10 723 1 2 241 chain 4415 chr12 133851895 + 38624909 38624961 MER5A 189 - 8 60 201732 52 chain 25603 chr12 133851895 + 38625167 38625520 THE1B 368 + 0 368 101712 97 9 26 49 10 9 119 0 1 5 3 0 5 0 1 56 chain 3702 chr12 133851895 + 38638535 38638574 MLT2B3 573 - 0 39 211918 39 chain 19077 chr12 133851895 + 38649943 38650174 MER75 514 - 2 234 129888 199 3 4 29 chain 54565 chr12 133851895 + 38653128 38653836 LTR12_ 688 + 0 688 55987 123 25 0 92 0 1 31 4 3 103 0 6 154 1 0 175 chain 78089 chr12 133851895 + 38659080 38660003 L1PA7 6471 - 1122 2052 44468 454 0 1 88 0 2 132 0 4 249 chain 84215 chr12 133851895 + 38660005 38661094 L1PA7 6471 + 5359 6459 41810 144 1 0 4 0 3 82 0 2 29 0 6 115 1 0 4 1 2 314 1 2 32 0 2 112 0 2 61 14 9 113 1 2 60 chain 79401 chr12 133851895 + 38669342 38670210 L1PA3long 6157 - 1174 2046 43830 625 0 4 243 chain 95631 chr12 133851895 + 38670210 38671264 L1PA3long 6157 + 5102 6157 37923 333 0 1 721 chain 15729 chr12 133851895 + 38691297 38691669 THE1B 368 - 0 368 139179 56 1 2 7 2 0 14 20 21 30 32 34 11 25 17 34 40 42 100 chain 13323 chr12 133851895 + 38699584 38699733 L1PA4 6152 + 5994 6143 146993 149 chain 7487 chr12 133851895 + 38720023 38720122 MER30 238 + 136 238 174224 51 3 6 45 chain 131504 chr12 133851895 + 38723544 38725111 SVA_C 1631 - 4 1590 27747 584 1 0 25 1 0 63 1 0 45 3 0 13 36 0 5 0 82 70 0 5 54 0 1 609 29 0 11 1 3 16 chain 2134 chr12 133851895 + 38724290 38724316 SVA_C 1631 - 830 856 188458 26 chain 41281 chr12 133851895 + 38737763 38738371 LTR14B 630 + 23 630 67557 267 0 7 50 91 83 200 chain 299345 chr12 133851895 + 38738945 38743189 L1PB1 5432 + 32 5417 13463 112 3 2 154 13 17 121 0 1 106 8 9 28 5 9 38 0 3 29 2 0 77 0 1 468 6 8 133 0 1 46 1 0 7 2 0 5 24 11 14 8 1021 39 3 0 10 0 1 107 0 1 4 1 0 10 2 5 81 0 2 24 12 14 91 1 0 36 0 4 48 0 4 483 48 46 215 3 4 49 2 0 259 1 2 493 8 7 134 3 0 48 0 1 30 0 2 105 30 29 146 37 183 50 2 1 16 1 0 44 1 0 15 1 0 4 64 48 22 1 0 18 4 3 13 1 0 9 1 0 4 chain 32313 chr12 133851895 + 38745519 38745897 L1PA5 6144 - 4 383 80346 255 0 1 123 chain 175953 chr12 133851895 + 38745995 38748040 L1PA3long 6157 - 0 2057 21358 715 6 7 121 0 4 113 1 3 558 0 1 271 0 4 260 chain 55659 chr12 133851895 + 38757328 38757956 L1PA5 6144 + 5516 6144 55334 628 chain 8530 chr12 133851895 + 38763254 38763450 L1PB1 5432 - 5 170 168130 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 13 11 8 14 8 0 11 2 0 4 1 0 14 11 1 19 chain 116856 chr12 133851895 + 38769941 38771663 L1PB1 5432 - 15 1694 32175 4 1 0 9 1 0 13 1 0 45 2 0 14 1 0 4 3 1 19 30 18 10 2 1 37 6 5 16 2 1 44 80 62 9 0 3 86 0 2 393 7 4 85 0 1 36 10 15 42 0 1 435 21 10 254 chain 154325 chr12 133851895 + 38775425 38777487 L1PA8 5853 - 2 2060 24063 14 0 36 13 4 0 4 32 0 24 1 0 19 2 1 39 11 10 12 2 1 70 2 0 46 1 0 102 0 1 254 3 4 786 8 9 236 2 0 238 4 5 52 13 14 68 chain 91006 chr12 133851895 + 38777487 38778636 L1PA8 5853 + 2617 3774 39143 179 0 4 61 0 6 47 2 1 54 0 1 109 0 1 48 1 0 462 0 1 68 1 0 110 2 0 5 chain 24901 chr12 133851895 + 38787499 38787844 THE1B 368 + 0 368 105339 44 0 15 113 1 0 14 13 14 104 2 0 5 0 10 49 chain 101823 chr12 133851895 + 38797712 38798944 L1PA7 6471 - 1 1244 36308 4 1 0 8 0 2 116 6 9 199 0 1 339 5 7 160 0 7 183 3 0 208 chain 215414 chr12 133851895 + 38817065 38819807 HERVL-int 5654 - 767 3511 18137 99 0 1 85 22 23 653 0 3 7 5 2 115 1 0 118 5 0 20 4 5 138 0 1 661 0 4 316 1 0 4 0 1 56 0 1 18 9 8 163 2 0 115 0 2 125 chain 12973 chr12 133851895 + 38833980 38834155 Tigger1a_Art 216 - 30 208 148342 63 0 1 73 10 12 29 chain 120383 chr12 133851895 + 38835571 38837155 LTR12C 1709 + 0 1709 30909 278 4 8 178 9 7 55 3 4 23 1 2 95 0 119 68 1 0 100 50 0 131 0 1 2 0 47 106 0 4 72 13 16 242 1 0 69 1 0 82 chain 2369 chr12 133851895 + 38836410 38836436 LTR12C 1709 + 1118 1144 185966 26 chain 195093 chr12 133851895 + 38865382 38867587 HERV17-int 4347 + 2121 4343 19577 470 0 1 548 0 1 401 1 15 612 0 1 173 chain 26643 chr12 133851895 + 38867900 38868225 LTR17 781 + 0 325 97501 119 0 9 32 0 1 144 10 0 20 chain 188147 chr12 133851895 + 38892957 38895245 L1PA7 6471 + 4178 6470 20222 249 0 1 229 15 16 282 1 2 569 0 1 94 1 0 464 0 1 231 1 2 147 1 0 4 chain 482047 chr12 133851895 + 38901687 38908555 L1PA6 6164 + 3 6162 7654 340 48 21 85 19 0 117 22 0 3 53 0 176 21 0 42 0 18 214 0 1 224 8 4 652 2 0 135 4 13 118 0 1 13 1 0 110 318 0 44 23 15 332 0 2 527 0 1 6 1 0 23 0 4 79 1 0 250 0 1 157 337 29 326 4 9 270 0 4 122 1 2 634 0 7 155 1 10 10 12 0 191 0 6 469 1 18 10 7 0 8 1 8 109 7 9 25 chain 327575 chr12 133851895 + 38927834 38932048 L1PA8A 6298 + 2075 6291 12287 435 25 1 59 1 0 50 7 11 191 0 9 39 1 3 63 0 3 141 0 1 183 15 19 130 0 4 454 2 0 227 5 4 36 0 1 4 0 2 758 13 5 36 6 7 33 5 7 75 7 6 267 0 5 145 2 1 348 8 9 24 0 1 419 chain 23847 chr12 133851895 + 38941774 38942107 THE1B 368 - 0 349 111202 78 5 4 118 1 0 16 0 3 85 5 20 25 chain 49156 chr12 133851895 + 38955646 38956198 L1PA2 6032 - 2 555 59632 71 5 6 476 chain 99651 chr12 133851895 + 38967471 38969228 L1MA1 4479 + 221 1674 36868 7 1 0 51 2 0 290 1 0 39 0 3 5 3 0 11 0 6 44 0 9 14 0 4 92 0 1 6 4 0 6 7 12 27 12 8 71 0 5 194 15 37 20 0 4 50 0 1 287 340 0 66 9 0 83 chain 24153 chr12 133851895 + 38968746 38969044 AluSx4 309 + 11 309 109463 298 chain 25206 chr12 133851895 + 38969231 38969513 L1PA3long 6157 - 0 281 103709 148 1 0 133 chain 70420 chr12 133851895 + 38969536 38970303 L1PA3long 6157 + 5127 5903 48204 110 0 9 657 chain 27732 chr12 133851895 + 38997308 38997601 AluYa5 310 - 17 310 93928 293 chain 5675 chr12 133851895 + 39010103 39010180 L1PA4 6152 - 1 69 188337 22 9 0 46 chain 7696 chr12 133851895 + 39010184 39010288 L1PA4 6152 + 5981 6086 172961 16 8 9 80 chain 148794 chr12 133851895 + 39015248 39016894 L1PA4 6152 + 4502 6152 24783 798 0 5 697 1 0 150 chain 33726 chr12 133851895 + 39020138 39020503 L1PA3long 6157 - 1495 1860 76968 365 chain 134591 chr12 133851895 + 39020503 39022015 L1PA3long 6157 + 4643 6157 27097 5 0 3 397 0 1 4 1 0 254 1 0 850 chain 176823 chr12 133851895 + 39032473 39034706 HERV17-int 4347 + 15 4347 21271 12 1 0 16 5 4 31 1 0 34 3 1 25 2 1 168 0 1 27 9 439 14 15 15 372 1 0 158 0 1 28 1 0 106 1 0 136 1 0 431 25 1697 328 9 10 95 0 1 97 1 4 80 chain 24930 chr12 133851895 + 39035023 39035353 LTR17 781 + 0 326 105163 61 1 0 95 7 5 18 1 0 147 chain 3891 chr12 133851895 + 39048921 39048995 MADE1 96 + 12 94 209000 21 13 22 4 1 0 35 chain 397462 chr12 133851895 + 39050709 39055405 L1PA6 6164 + 0 6159 10181 553 0 1 352 0 4 742 0 1 559 0 4 118 5 3 4 1 0 47 1 0 4 0 1 195 8 11 283 5 1437 46 0 4 722 8 7 95 0 2 117 0 4 50 0 3 639 0 1 115 0 8 27 chain 39887 chr12 133851895 + 39063351 39063903 LTR19B 566 + 0 566 69477 169 1 0 42 0 1 238 28 27 14 1 13 7 0 3 15 1 0 5 1 2 30 chain 20849 chr12 133851895 + 39066748 39067130 THE1D 372 + 0 372 124467 76 15 0 8 4 0 20 0 1 60 77 81 88 1 5 33 chain 13196 chr12 133851895 + 39082490 39082759 L1PB1 5432 + 5169 5430 147480 48 7 6 13 1 0 43 2 1 8 0 1 9 32 33 15 2 0 24 1 0 23 1 0 8 1 0 17 1 0 7 1 0 5 chain 127981 chr12 133851895 + 39109273 39111207 L1PB2 3958 + 1895 3818 28570 61 3 7 72 1 0 390 4 5 51 7 0 147 0 1 35 1 0 17 0 2 5 23 25 5 2 0 25 26 25 93 5 6 16 0 1 36 5 8 13 14 10 6 0 6 139 0 1 39 0 1 163 13 11 43 1 0 17 8 4 14 3 4 40 2 0 12 4 0 94 1 0 72 1 0 64 5 4 67 2 0 22 19 18 26 chain 24258 chr12 133851895 + 39116549 39116937 THE1D 372 + 0 372 108904 57 9 0 131 35 36 12 16 9 94 1 0 33 chain 77314 chr12 133851895 + 39133909 39134781 L1PA5 6144 - 1709 2590 44739 245 0 1 29 0 4 200 0 4 398 chain 149301 chr12 133851895 + 39134781 39136479 L1PA5 6144 + 4430 6132 24715 483 0 1 227 0 9 137 1 0 396 5 1 160 1 0 288 chain 110817 chr12 133851895 + 39143171 39144687 THE1B-int 1605 + 1 1600 33997 208 0 21 6 6 0 192 3 28 197 0 8 11 6 1 35 7 4 41 45 46 51 0 1 139 0 39 190 0 1 112 0 1 267 chain 25428 chr12 133851895 + 39144692 39145047 THE1B 368 + 0 368 102555 44 0 15 109 2 0 108 21 20 19 0 1 52 chain 15599 chr12 133851895 + 39152840 39153054 MER75B 242 + 22 242 139589 107 0 5 36 14 15 57 chain 10828 chr12 133851895 + 39165519 39165698 L1MB1 2102 + 1155 1343 156875 15 27 33 17 0 1 32 0 2 88 chain 27585 chr12 133851895 + 39171639 39172049 MER1A 529 + 102 524 94394 114 20 24 141 0 7 61 19 20 55 chain 257422 chr12 133851895 + 39190365 39193447 L1P1 4361 + 2 3080 15852 120 14 0 11 1 15 426 1 0 112 13 6 102 31 31 1171 0 1 691 0 3 389 chain 562082 chr12 133851895 + 39193448 39199475 L1HS 6032 + 3 6031 291 3044 0 2 1013 2 1 1968 chain 276393 chr12 133851895 + 39199489 39202565 L1PA3long 6157 + 3076 6157 14847 189 0 2 419 0 1 606 0 2 1415 2 0 31 0 1 97 0 1 317 chain 25467 chr12 133851895 + 39206096 39206454 THE1C 375 - 11 375 102366 15 1 0 185 1 0 12 6 10 22 7 4 75 0 7 34 chain 95213 chr12 133851895 + 39211950 39213162 L1PA8 5853 - 0 1223 38028 50 1 18 13 1 0 31 2 1 51 12 10 71 2 0 42 0 2 555 2 0 70 7 6 9 0 1 293 chain 29168 chr12 133851895 + 39220995 39221430 L1PA15 4387 + 3887 4311 88213 23 1 0 23 1 0 171 1 0 27 1 0 53 2 1 16 8 6 10 1 0 47 9 6 41 chain 3822 chr12 133851895 + 39248195 39248238 MLT2A2 560 + 517 560 210065 43 chain 59327 chr12 133851895 + 39263911 39264598 L1PA7 6471 + 5782 6464 53206 51 1 0 148 4 0 483 chain 6114 chr12 133851895 + 39307042 39307122 MADE1 96 - 0 96 184316 31 0 16 49 chain 548839 chr12 133851895 + 39357268 39363400 L1PA3long 6157 - 0 6153 1596 112 0 1 553 1 0 358 4 5 229 0 1 185 0 1 3297 0 4 1272 0 14 121 chain 44335 chr12 133851895 + 39376809 39377536 MER51A 677 - 16 677 63781 77 8 0 98 19 0 5 38 0 67 0 4 143 0 1 74 56 40 11 0 9 7 3 0 55 0 3 23 5 6 38 chain 377201 chr12 133851895 + 39381478 39385831 L1P1 4361 + 6 4341 10840 316 0 3 249 1 0 269 18 1 3306 1 0 155 1 0 23 2 1 12 chain 26973 chr12 133851895 + 39395767 39396061 L1PA4 6152 - 0 294 96362 294 chain 22017 chr12 133851895 + 39440388 39440670 AluY 311 + 20 299 120153 28 11 9 76 4 0 21 0 3 142 chain 83355 chr12 133851895 + 39448106 39449135 MER11C 1089 + 10 1059 42177 236 0 9 54 4 8 51 0 2 176 19 20 124 0 4 5 1 0 38 0 1 321 chain 11176 chr12 133851895 + 39465275 39465395 L1PA4 6152 + 6031 6151 155535 120 chain 224342 chr12 133851895 + 39491764 39494733 L1PB1 5432 + 1507 4493 17632 103 0 1 421 0 1 58 1 0 105 2 3 114 5 6 179 19 22 322 7 6 40 14 13 398 1 2 4 1 0 181 0 4 233 5 9 472 0 2 88 8 10 94 0 1 94 chain 11499 chr12 133851895 + 39499835 39499993 MSTA 426 - 0 174 154305 108 6 22 44 chain 38443 chr12 133851895 + 39520469 39520971 MER9a3 513 - 0 513 71526 68 14 11 176 1 0 91 0 14 134 1 2 17 chain 3161 chr12 133851895 + 39529439 39529489 MADE1 96 + 2 44 221724 35 8 0 7 chain 24739 chr12 133851895 + 39531011 39531349 MER51B 395 - 2 395 106229 159 8 7 40 2 1 38 1 57 46 0 1 44 chain 9407 chr12 133851895 + 39537309 39537459 MER2 342 - 63 206 163520 56 18 11 76 chain 25960 chr12 133851895 + 39539965 39540261 AluSp 311 + 12 309 100168 95 2 3 199 chain 28684 chr12 133851895 + 39545312 39545799 L1MA2 4263 - 3559 4184 90389 33 2 0 6 7 9 70 0 149 101 7 6 19 13 14 47 1 0 87 10 0 44 1 0 4 3 4 32 chain 163745 chr12 133851895 + 39552901 39554710 L1PA3long 6157 - 0 1814 22843 1651 1 2 146 0 4 11 chain 15424 chr12 133851895 + 39574204 39574512 MER1B 344 - 27 302 140118 31 15 19 47 4 0 11 0 11 40 8 4 59 54 14 39 chain 7923 chr12 133851895 + 39579301 39579390 L1PA2 6032 + 5943 6032 171496 89 chain 24641 chr12 133851895 + 39580662 39581274 LTR1 825 + 181 825 106771 17 1 0 5 133 174 29 1 14 21 23 5 91 1 0 27 15 0 62 2 0 48 37 51 10 0 1 45 21 21 23 chain 44035 chr12 133851895 + 39582763 39583294 MER9a1 513 - 0 513 64163 57 0 2 384 21 1 69 chain 78890 chr12 133851895 + 39583294 39585992 HERVK9-int 4720 - 0 3717 14086 282 0 96 45 0 1 243 1 0 735 10 11 887 0 924 155 2 0 338 chain 467973 chr12 133851895 + 39586077 39591360 L1PA3long 6157 - 0 5537 8110 2864 0 1 116 1 0 63 0 246 1816 1 3 413 0 6 9 chain 53129 chr12 133851895 + 39591360 39593177 HERVK9-int 4720 - 3724 4684 14086 615 857 2 80 1 0 131 7 6 30 2 1 8 1 0 7 0 6 52 1 0 4 8 5 13 chain 70974 chr12 133851895 + 39591982 39592786 L1PA4 6152 + 5332 6135 47940 530 1 0 273 chain 45879 chr12 133851895 + 39594512 39595024 MER9a1 513 - 0 513 62145 208 0 1 304 chain 499223 chr12 133851895 + 39601552 39607692 L1PA5 6144 + 1 6144 6880 112 11 25 73 1 0 197 34 33 311 11 12 36 0 17 135 25 0 63 1 0 150 24 16 116 0 1 2061 0 1 418 4 6 76 8 7 382 0 1 226 0 1 831 0 1 658 19 20 157 chain 9192 chr12 133851895 + 39619893 39620008 LTR32 486 - 208 322 164597 77 1 0 37 chain 481297 chr12 133851895 + 39654222 39659685 L1PA4 6152 + 3 6152 7682 732 0 1 500 1 0 1418 0 681 339 0 2 246 0 1 1176 0 1 4 0 1 1047 chain 2877 chr12 133851895 + 39662332 39662365 Tigger1 2417 + 2259 2292 227414 33 chain 46179 chr12 133851895 + 39691020 39691534 L1PA3long 6157 + 5628 6143 61867 380 0 1 134 chain 21140 chr12 133851895 + 39733051 39733335 Tigger3c 601 + 303 588 123412 16 1 0 20 5 4 231 0 3 11 chain 3313 chr12 133851895 + 39857783 39857821 MIR 256 - 60 98 218714 38 chain 539741 chr12 133851895 + 39863456 39869607 L1PA4 6152 - 0 6152 2859 838 0 2 1645 0 1 958 0 5 6 5 0 635 8 11 1075 0 1 399 1 0 116 6 0 309 0 1 150 chain 35167 chr12 133851895 + 39870792 39871258 MER4A1 472 + 0 472 75957 221 15 16 32 1 0 5 0 7 108 1 0 83 chain 207193 chr12 133851895 + 39880949 39883270 L1PA4 6152 + 3823 6151 18704 328 0 3 298 0 3 1362 0 1 333 chain 25066 chr12 133851895 + 39889890 39890258 THE1B 368 + 0 368 104475 7 0 8 154 1 0 21 19 10 10 0 4 14 14 12 128 chain 11990 chr12 133851895 + 39906050 39906204 L1PA8 5853 + 5701 5853 152246 39 2 1 19 2 1 92 chain 21806 chr12 133851895 + 39907452 39907828 L1M1 2793 + 2309 2685 120996 25 0 4 8 1 0 77 45 49 74 0 1 73 20 13 41 1 0 11 chain 90187 chr12 133851895 + 39915382 39916474 L1PA7 6471 + 5358 6460 39581 145 1 0 111 0 3 224 3 2 439 0 12 94 6 7 54 4 0 11 chain 117487 chr12 133851895 + 39920063 39921567 THE1B-int 1605 - 5 1547 31971 7 0 1 193 0 1 5 10 16 618 5 6 43 1 2 51 1 2 188 0 2 8 0 25 374 chain 24038 chr12 133851895 + 39931735 39932381 MER51B 395 + 0 395 110125 95 0 2 11 10 66 71 1 0 4 4 5 19 309 0 122 chain 32743 chr12 133851895 + 39932461 39932885 MER48 407 + 6 402 79627 157 20 0 9 8 0 230 chain 57760 chr12 133851895 + 39934056 39934811 MER4E1 777 + 0 760 54105 245 3 2 217 0 1 55 29 33 97 8 9 101 chain 43495 chr12 133851895 + 39937768 39938424 LTR8 732 - 18 701 64818 177 16 13 17 0 5 12 0 2 136 44 71 39 5 7 73 0 1 5 1 0 114 6 0 11 chain 39330 chr12 133851895 + 39953814 39954250 L1PA5 6144 - 0 436 70284 436 chain 527583 chr12 133851895 + 39957434 39963576 L1PA4 6152 - 0 6152 4441 6 0 5 134 5 0 6 0 5 98 1 0 468 1 0 632 0 1 643 0 1 976 1 0 856 1 2 187 0 5 794 9 8 887 0 1 437 chain 74146 chr12 133851895 + 39978274 39979323 L1PA14 3548 - 92 1117 46433 42 2 1 15 1 0 5 1 0 11 7 5 33 24 19 104 1 0 84 1 0 6 2 0 17 4 0 111 6 2 48 2 0 14 8 6 19 2 0 127 0 4 94 1 0 187 1 2 69 chain 37237 chr12 133851895 + 40027719 40028152 L1PA6 6164 - 1485 1918 73188 433 chain 120412 chr12 133851895 + 40028152 40029599 L1PA6 6164 + 4719 6161 30901 134 2 0 204 0 2 138 13 12 106 0 2 46 0 1 31 9 0 756 0 2 8 chain 529291 chr12 133851895 + 40057894 40063986 L1PA4 6152 - 16 6139 4268 828 0 4 948 0 2 151 0 6 126 1 0 4 1 2 1468 0 1 969 0 12 195 4 5 178 0 1 801 0 2 267 7 9 144 chain 524383 chr12 133851895 + 40092936 40098883 L1PA3long 6157 + 46 6156 4731 105 1 2 420 1 9 195 2 130 49 0 4 289 2 1 155 0 4 182 0 1 40 0 2 6 2 0 7 1 0 849 2 0 744 0 2 17 0 4 681 0 1 697 0 5 232 0 4 208 0 3 212 0 2 848 chain 3182 chr12 133851895 + 40101633 40101677 L1MA2 4263 + 4069 4114 221275 12 0 2 22 1 0 9 chain 69498 chr12 133851895 + 40108240 40109248 L1PB1 5432 - 336 1339 48610 36 81 74 190 0 1 174 15 12 149 0 2 153 1 0 23 0 2 80 14 15 92 chain 21900 chr12 133851895 + 40109248 40109504 L1PB1 5432 + 3836 4092 120285 256 chain 4208 chr12 133851895 + 40116636 40116883 MER77B 728 + 38 363 204451 29 181 259 37 chain 463283 chr12 133851895 + 40120002 40125586 L1PA7 6471 - 38 5643 8286 101 1 0 196 1 0 515 1 0 5 1 0 107 0 15 441 0 29 63 25 11 21 29 12 421 0 11 253 2 1 47 2 0 348 13 0 144 1 0 113 0 2 943 0 2 253 6 8 110 5 4 99 0 1 21 1 0 198 1 8 231 7 3 5 0 3 309 0 1 151 0 2 8 0 4 385 chain 59632 chr12 133851895 + 40127373 40128166 L1P3 4156 - 3366 4153 53033 109 1 0 4 1 2 38 5 6 230 1 0 31 9 5 45 1 0 68 2 1 248 chain 535889 chr12 133851895 + 40139760 40145862 L1PA5 6144 + 3 6142 3460 127 2 1 252 2 11 1247 1 0 535 0 4 201 0 4 205 0 1 1085 1 4 664 0 4 99 0 3 847 0 4 9 0 9 128 2 0 695 chain 129765 chr12 133851895 + 40176395 40179931 THE1A-int 1579 + 0 1579 28140 261 1962 0 22 0 1 170 1 2 424 0 3 696 chain 77105 chr12 133851895 + 40176686 40177567 L1PA5 6144 - 12 899 44915 758 0 1 66 0 2 11 0 3 46 chain 93007 chr12 133851895 + 40177573 40178618 L1PA5 6144 + 4178 5224 38653 321 0 1 724 chain 25705 chr12 133851895 + 40179939 40180285 THE1A 353 + 8 353 101265 101 2 1 69 3 4 15 1 0 155 chain 11555 chr12 133851895 + 40183757 40183905 MER33 330 - 36 184 154083 148 chain 85726 chr12 133851895 + 40184027 40184962 L1PA2 6032 - 6 942 41257 185 0 1 750 chain 118767 chr12 133851895 + 40184962 40186240 L1PA2 6032 + 3803 5081 31506 1278 chain 87143 chr12 133851895 + 40194132 40195059 L1HS 6032 + 5103 6030 40713 927 chain 55477 chr12 133851895 + 40203315 40203938 L1PA4 6152 - 6 629 55426 254 1 0 214 0 1 154 chain 20551 chr12 133851895 + 40210148 40210369 L1PA5 6144 + 5900 6121 125470 221 chain 24149 chr12 133851895 + 40214940 40215223 AluY 311 + 7 294 109476 114 3 7 166 chain 26444 chr12 133851895 + 40215723 40216019 L1PA3long 6157 - 0 296 98255 296 chain 192110 chr12 133851895 + 40230225 40232306 L1PA2 6032 + 3951 6032 19858 2081 chain 7579 chr12 133851895 + 40241870 40242052 L1PA14 3548 + 3299 3465 173674 33 18 13 34 4 2 6 1 0 11 1 0 16 13 12 29 6 0 10 chain 27063 chr12 133851895 + 40260288 40260580 AluYf4 310 - 18 310 96071 292 chain 92231 chr12 133851895 + 40292732 40293744 L1PA3long 6157 - 2450 3463 38755 414 0 1 598 chain 216585 chr12 133851895 + 40293744 40296152 L1PA3long 6157 + 3746 6157 18080 411 0 3 827 2 0 1019 1 3 148 chain 5923 chr12 133851895 + 40308388 40308468 MADE1 96 - 0 96 185956 35 1 17 44 chain 298941 chr12 133851895 + 40334539 40340060 L1PB1 5432 - 12 5371 13482 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 14 5 7 4 0 15 1 0 44 1 0 16 2 1 20 0 2 31 136 66 394 0 2 83 0 1 90 0 58 91 1 0 77 1 2 179 0 1 167 1 0 224 3 4 132 0 197 12 1357 1022 5 0 2 85 0 3 466 1 2 21 4 6 119 2 1 49 0 5 202 22 8 222 7 10 158 0 3 151 11 15 69 0 1 159 1 2 195 4 0 345 chain 137408 chr12 133851895 + 40362614 40364143 L1PA5 6144 - 12 1541 26573 241 1 0 698 0 1 589 chain 555242 chr12 133851895 + 40372118 40378141 L1PA2 6032 + 7 6029 797 3037 1 0 2985 chain 63057 chr12 133851895 + 40390577 40391350 L1PB1 5432 + 3704 4799 51428 24 2 4 610 0 321 45 1 0 91 chain 32147 chr12 133851895 + 40392233 40392630 THE1B-int 1605 + 1204 1600 80616 91 2 1 304 chain 82838 chr12 133851895 + 40392766 40393840 MER11A 1151 + 0 1135 42403 55 0 99 140 4 0 94 0 1 54 0 1 231 0 1 72 0 5 83 52 0 12 4 13 75 2 0 5 0 2 28 0 1 163 chain 14969 chr12 133851895 + 40484786 40485052 Tigger3a 397 - 75 397 141420 142 8 14 27 15 64 22 26 27 26 chain 29742 chr12 133851895 + 40554429 40554897 MER4A1 472 - 0 472 85687 29 0 2 37 18 20 37 9 7 70 14 35 9 21 0 210 0 2 14 chain 179372 chr12 133851895 + 40554905 40557473 MER4-int 2692 - 0 2466 21045 256 3 8 105 0 2 43 4 5 55 10 12 193 3 1 61 2 0 59 0 2 73 15 28 6 1 0 140 135 0 41 0 5 42 0 1 71 1 6 20 7 0 8 0 5 41 1 2 75 2 0 12 1 0 523 0 13 60 7 1 110 3 0 114 0 2 265 chain 4065 chr12 133851895 + 40559598 40559645 MADE1 96 + 49 96 206397 47 chain 30527 chr12 133851895 + 40580964 40581453 MER4A1 472 - 0 472 83375 192 33 12 26 45 47 159 4 3 11 0 1 4 0 2 15 chain 186018 chr12 133851895 + 40581461 40584405 MER4-int 2692 - 0 2618 20413 49 1 8 11 7 0 345 30 29 235 318 0 67 1 2 48 6 8 42 2 1 65 1 0 140 0 3 130 5 0 18 9 14 151 5 3 11 1 0 248 28 0 210 1 3 60 0 13 60 1 0 170 13 22 29 3 5 159 7 9 196 1 2 8 4 1 18 2 0 14 3 0 11 chain 5885 chr12 133851895 + 40600939 40601042 AluJr 308 + 7 116 186327 24 1 0 20 14 21 44 chain 17148 chr12 133851895 + 40604629 40604854 MER4A1 472 + 0 225 135173 15 0 2 172 2 0 36 chain 54483 chr12 133851895 + 40604956 40605709 MER4-int 2692 + 179 970 56038 34 7 6 181 11 23 69 0 2 33 12 21 143 0 2 15 14 12 64 0 13 64 0 3 106 chain 16318 chr12 133851895 + 40638509 40638691 L1PA3long 6157 + 5971 6153 137443 182 chain 121970 chr12 133851895 + 40659535 40660941 L1PA4 6152 + 4721 6152 30394 580 0 1 550 3 18 140 0 4 127 0 5 6 chain 36408 chr12 133851895 + 40684828 40685234 L1PA5 6144 + 5731 6137 74360 406 chain 15168 chr12 133851895 + 40695041 40695220 AluSc5 308 + 96 275 140864 179 chain 11775 chr12 133851895 + 40725290 40725509 MER30 238 - 3 238 153152 105 4 20 41 0 52 3 52 0 14 chain 134355 chr12 133851895 + 40746271 40747831 SVA_C 1631 - 9 1631 27140 633 36 92 18 0 1 8 2 0 5 12 15 336 1 0 492 0 5 17 chain 29479 chr12 133851895 + 40776205 40776577 PABL_A 660 + 0 382 86718 84 0 9 112 4 5 172 chain 8243 chr12 133851895 + 40777344 40777437 THE1C 375 - 39 132 169721 93 chain 170571 chr12 133851895 + 40780256 40782321 HERV17-int 4347 + 13 2510 21985 65 1 0 37 2 0 24 1 0 196 4 438 402 1 0 186 5 6 103 1 2 613 6 7 418 chain 5295 chr12 133851895 + 40820480 40820550 L1PA6 6164 - 4 71 192066 6 3 0 61 chain 5140 chr12 133851895 + 40833807 40833867 L1PA8 5853 + 5789 5849 193668 60 chain 3917 chr12 133851895 + 40886246 40886289 MADE1 96 - 53 96 208593 43 chain 158376 chr12 133851895 + 40933381 40935201 L1PA5 6144 - 1 1819 23547 242 0 5 426 11 3 556 0 1 585 chain 312475 chr12 133851895 + 41002893 41007267 L1PA11 4918 - 401 4909 12914 9 4 0 15 8 7 12 2 0 61 2 0 6 3 0 12 1 0 67 8 3 11 19 23 113 4 7 300 0 2 5 2 0 986 0 1 47 6 9 100 0 5 3 6 0 150 3 0 28 12 0 210 1 4 50 7 11 208 0 1 63 0 1 173 6 7 159 9 0 172 7 11 40 0 3 49 79 0 295 6 1 39 0 1 146 1 2 6 0 1 89 0 13 91 1 4 130 3 226 17 0 2 91 2 1 5 2 0 31 2 1 53 2 0 12 2 1 36 7 4 13 2 4 16 2 0 28 1 0 5 chain 81925 chr12 133851895 + 41014300 41015580 LTR12E 1234 + 0 1210 42794 29 9 0 61 0 1 46 5 10 55 0 19 69 1 2 37 10 53 122 0 1 185 42 1 149 9 20 81 0 1 86 97 0 42 0 1 38 20 13 15 12 13 60 chain 40435 chr12 133851895 + 41031249 41031804 MER41B 635 + 0 556 68683 92 1 0 35 3 4 220 26 27 178 chain 439722 chr12 133851895 + 41031860 41037109 L1PA5 6144 - 12 6130 9061 158 1 2 686 5 6 658 2 0 840 1 867 606 7 1 221 0 1 659 0 1 257 15 6 161 10 0 824 12 24 14 1 15 111 chain 12157 chr12 133851895 + 41099335 41099466 L1PA2 6032 - 3 134 151583 131 chain 13399 chr12 133851895 + 41099927 41100073 L1PA5 6144 - 7 153 146723 146 chain 6142 chr12 133851895 + 41106810 41106886 MSTB1 431 - 14 90 184057 76 chain 45345 chr12 133851895 + 41115370 41115858 L1PA3long 6157 - 15 503 62663 488 chain 35594 chr12 133851895 + 41131040 41131561 MLT2A1 477 - 0 477 75421 48 76 24 20 0 2 183 0 1 26 0 4 26 0 1 142 chain 4355 chr12 133851895 + 41133317 41133370 MER53 195 - 101 154 202498 53 chain 8904 chr12 133851895 + 41148155 41148266 MER2 342 - 95 206 166115 111 chain 4005 chr12 133851895 + 41163488 41163569 MER96B 391 + 293 370 207318 32 18 16 22 2 0 7 chain 9240 chr12 133851895 + 41178977 41179130 MSTB 430 - 0 152 164351 21 25 24 107 chain 24605 chr12 133851895 + 41179221 41179610 LTR7B 505 - 14 505 106967 37 14 13 54 0 1 21 1 0 54 1 89 27 35 11 69 0 10 49 0 29 27 chain 135269 chr12 133851895 + 41207048 41208794 L1PA8A 6298 - 8 1755 26962 99 0 6 6 6 0 635 2 1 53 2 1 349 5 4 31 0 2 284 6 4 65 0 1 149 6 9 48 chain 291842 chr12 133851895 + 41208899 41212876 L1PA10 4194 - 46 3949 13914 31 16 13 23 1 0 149 0 2 1245 9 14 5 0 3 7 1 0 7 4 5 134 14 15 146 4 0 582 18 0 483 0 3 188 3 0 213 1 0 396 2 0 81 2 0 6 3 0 15 18 1 18 1 0 7 1 0 21 2 0 15 45 19 16 1 0 14 2 0 22 1 0 4 chain 4445 chr12 133851895 + 41216734 41216786 L1PA16 3655 - 86 138 201400 52 chain 22579 chr12 133851895 + 41240006 41240273 AluYf4 310 + 12 286 117680 64 0 6 125 0 1 78 chain 7767 chr12 133851895 + 41253099 41253288 L1MC2 1988 + 1822 1982 172494 79 82 53 28 chain 78146 chr12 133851895 + 41280251 41281109 L1PA4 6152 - 882 1740 44439 858 chain 78418 chr12 133851895 + 41281109 41281977 L1PA4 6152 + 5284 6152 44309 868 chain 25173 chr12 133851895 + 41299795 41300086 AluY 311 + 0 296 103890 89 0 4 39 0 1 163 chain 8159 chr12 133851895 + 41305181 41305284 THE1A 353 - 117 219 170178 38 1 0 64 chain 18308 chr12 133851895 + 41343081 41343299 L1PA2 6032 - 2 223 132058 12 0 1 41 1 5 84 2 0 78 chain 9945 chr12 133851895 + 41366677 41366797 L1PA3long 6157 - 0 123 160861 11 1 4 108 chain 20497 chr12 133851895 + 41376661 41376896 L1PA5 6144 + 5901 6137 125637 104 0 1 131 chain 199937 chr12 133851895 + 41396660 41399552 L1PA13 3608 - 636 3522 19220 79 0 4 209 0 1 202 1 0 5 3 1 56 0 1 173 13 8 201 1 0 47 0 3 22 38 44 161 0 1 151 0 1 45 0 2 285 0 5 145 0 4 225 1 2 258 2 0 99 2 1 16 2 0 11 1 0 15 9 8 18 6 2 16 15 13 4 1 0 12 1 0 124 1 0 4 1 0 13 1 0 4 2 0 17 49 53 24 3 0 12 2 1 26 3 0 21 10 8 19 1 0 4 chain 29182 chr12 133851895 + 41400850 41401161 AluYa5 310 - 0 310 88142 184 1 0 126 chain 6358 chr12 133851895 + 41405012 41405089 HUERS-P3-int 2218 - 1473 1550 182326 77 chain 191790 chr12 133851895 + 41434292 41436400 L1PA3long 6157 - 1576 3683 19886 1891 1 0 216 chain 141919 chr12 133851895 + 41436400 41437961 L1PA3long 6157 + 4594 6157 25785 792 0 2 769 chain 25351 chr12 133851895 + 41461307 41461579 L1PA2 6032 + 5757 6030 102946 122 0 1 150 chain 535261 chr12 133851895 + 41475270 41481273 L1PA3long 6157 - 7 6145 3559 7 0 5 830 0 4 669 1 0 1865 2 1 31 5 4 738 5 4 275 0 1 812 4 132 619 0 1 140 chain 70797 chr12 133851895 + 41486600 41487386 L1PA3long 6157 - 0 784 48014 354 2 0 430 chain 2847 chr12 133851895 + 41492774 41492804 tRNA-Thr-ACG_ 70 - 30 60 227921 30 chain 84077 chr12 133851895 + 41510999 41511915 L1PA3long 6157 - 467 1384 41869 301 0 1 615 chain 44752 chr12 133851895 + 41511915 41512410 L1PA3long 6157 + 5662 6157 63331 495 chain 4541 chr12 133851895 + 41512454 41512505 L1PA16 3655 + 3473 3524 200326 51 chain 86339 chr12 133851895 + 41532107 41533184 L1PA7 6471 + 5376 6461 41025 149 7 11 74 6 4 304 0 1 117 0 1 4 0 2 226 0 1 127 0 1 63 chain 16472 chr12 133851895 + 41543049 41543395 THE1D 372 - 15 372 137003 73 84 102 118 33 24 25 0 2 13 chain 1732 chr12 133851895 + 41551786 41551992 L1PA10 4194 - 33 236 76000 11 1 0 34 3 0 52 0 1 105 chain 253608 chr12 133851895 + 41552009 41554870 L1PA4 6152 - 0 2868 16050 769 0 1 953 0 1 365 0 1 143 0 1 304 0 3 327 chain 66594 chr12 133851895 + 41554870 41555636 L1PA4 6152 + 2509 3279 49832 661 0 1 85 0 3 20 chain 2775 chr12 133851895 + 41555636 41555966 L1PA10 4194 - 237 584 76000 20 0 2 49 0 13 79 0 3 5 3 0 51 0 2 123 chain 43158 chr12 133851895 + 41559989 41560470 L1PA2 6032 + 5550 6028 65219 469 3 0 9 chain 293369 chr12 133851895 + 41572755 41576067 L1PA4 6152 - 9 3327 13802 141 0 1 1649 0 4 287 0 1 629 0 1 144 8 5 115 0 1 177 0 1 162 chain 20345 chr12 133851895 + 41576073 41576303 L1PA4 6152 + 2571 2801 126080 230 chain 17442 chr12 133851895 + 41592385 41592570 L1PA3long 6157 + 5970 6155 134397 185 chain 93182 chr12 133851895 + 41603158 41604186 L1PA4 6152 - 9 1037 38604 1028 chain 13280 chr12 133851895 + 41607315 41607478 MER107 203 + 33 203 147174 55 0 1 84 0 6 24 chain 8519 chr12 133851895 + 41626351 41626447 L1PA4 6152 - 877 973 168194 96 chain 39963 chr12 133851895 + 41626447 41626892 L1PA4 6152 - 975 1422 69374 259 1 3 185 chain 75157 chr12 133851895 + 41626892 41627750 L1PA4 6152 + 5291 6150 45945 27 0 2 692 1 0 138 chain 66449 chr12 133851895 + 41631327 41632163 L1PA11 4918 - 793 1624 49891 465 2 0 275 2 0 36 1 0 55 chain 26390 chr12 133851895 + 41632163 41632762 L1PA11 4918 + 4159 4629 98134 169 6 0 63 19 16 67 2 0 14 1 0 13 0 1 6 92 0 9 48 38 13 20 12 5 1 0 8 1 0 5 19 13 18 chain 5478 chr12 133851895 + 41634871 41634952 Tigger4a 237 - 0 79 190238 64 5 3 12 chain 29486 chr12 133851895 + 41638469 41638791 AluYb8 318 - 2 318 86688 204 6 0 112 chain 487754 chr12 133851895 + 41673721 41679810 L1PA7 6471 + 3 6465 7451 407 3 4 135 0 1 75 1 2 1260 20 366 387 0 2 588 3 2 265 1 0 49 0 11 118 8 9 26 0 1 113 5 6 174 15 17 466 0 1 83 1 0 7 0 1 58 9 7 128 0 3 120 5 7 83 1 0 408 0 1 153 0 1 74 2 0 90 0 3 344 0 1 77 0 3 319 2 0 6 chain 18862 chr12 133851895 + 41706266 41706628 THE1B 368 - 0 368 130482 112 53 58 6 2 0 23 1 0 85 31 37 33 2 0 14 chain 10454 chr12 133851895 + 41729068 41729191 L1PA5 6144 - 0 123 158475 123 chain 90216 chr12 133851895 + 41766713 41767779 MER11C 1089 - 20 1089 39572 381 5 1 17 3 8 262 0 2 398 chain 22392 chr12 133851895 + 41816228 41816590 THE1D 372 - 7 372 118526 25 1 0 146 68 72 122 chain 29041 chr12 133851895 + 41816951 41817299 L1PA7 6471 - 3 351 88803 348 chain 20205 chr12 133851895 + 41864309 41864532 L1PA4 6152 - 5 228 126515 223 chain 13862 chr12 133851895 + 41882773 41883005 MER30 238 + 11 238 145026 79 21 1 8 3 0 7 4 25 68 3 0 39 chain 28239 chr12 133851895 + 42008187 42008554 THE1B 368 + 0 368 92160 90 0 4 78 2 1 20 2 0 175 chain 119686 chr12 133851895 + 42008554 42010112 THE1B-int 1605 + 0 1599 31149 165 7 13 254 12 37 255 0 3 54 6 6 225 0 1 255 0 9 293 6 3 26 chain 544432 chr12 133851895 + 42031217 42037242 L1PA2 6032 - 2 6029 2152 4201 0 1 791 0 3 603 2 0 66 0 1 108 2 1 252 chain 74235 chr12 133851895 + 42058674 42059615 L1PA8A 6298 + 5352 6291 46397 131 2 1 24 0 1 22 1 0 49 2 0 17 4 5 575 7 0 6 7 14 94 chain 546550 chr12 133851895 + 42060106 42066132 L1PA2 6032 - 0 6032 1876 151 0 2 1730 0 1 1104 0 1 885 0 1 4 1 0 450 1 0 6 1 2 636 0 1 985 1 2 71 chain 549167 chr12 133851895 + 42066254 42072269 L1PA2 6032 + 6 6024 1556 65 1 2 667 1 2 1087 0 1 323 1 0 4 0 1 3866 chain 49591 chr12 133851895 + 42078478 42079191 L1PB2 3958 + 3120 3836 59329 85 1 0 75 0 4 14 0 1 4 1 0 4 3 1 53 1 0 13 5 0 65 2 0 13 3 0 88 2 0 77 1 0 14 1 13 30 9 8 58 11 9 26 1 0 22 0 8 31 chain 24539 chr12 133851895 + 42088765 42089198 MER1A 529 + 37 525 107316 40 14 15 10 12 56 31 26 33 219 30 33 51 chain 28583 chr12 133851895 + 42118045 42118570 MER44B 551 + 36 550 90812 81 72 57 28 40 48 196 4 0 17 15 15 72 chain 28491 chr12 133851895 + 42123242 42123542 AluYg6 310 + 0 300 91222 300 chain 210256 chr12 133851895 + 42127104 42129515 L1PA5 6144 - 0 2424 18487 62 9 16 691 1 0 1296 0 5 347 0 2 5 chain 32548 chr12 133851895 + 42135787 42136250 MER1A 529 - 0 521 79948 58 12 15 281 3 0 5 2 0 5 0 5 16 0 44 54 11 22 16 chain 67035 chr12 133851895 + 42153656 42154578 L1PA11 4918 + 3549 4476 49642 88 2 3 78 19 16 410 0 9 98 1 0 7 6 7 15 12 16 14 0 4 14 5 0 64 6 3 12 2 0 69 chain 7177 chr12 133851895 + 42184598 42184815 MER31B 477 + 102 335 176229 16 67 84 42 37 35 35 0 1 20 chain 225037 chr12 133851895 + 42200743 42203545 L1PA8 5853 + 3061 5853 17595 147 7 6 101 0 1 474 0 1 161 0 2 261 2 1 118 1 0 382 1 0 288 6 5 85 1 0 60 7 6 402 1 0 47 3 1 68 12 12 5 2 0 45 2 1 19 1 0 93 chain 15934 chr12 133851895 + 42210031 42210356 MER6A 605 - 0 345 138570 57 65 67 14 0 1 138 31 48 20 chain 4368 chr12 133851895 + 42212149 42212198 MLT1B 390 + 308 357 202342 49 chain 152894 chr12 133851895 + 42215696 42217377 L1PA4 6152 - 827 2510 24244 819 0 1 822 0 1 40 chain 71097 chr12 133851895 + 42217377 42218148 L1PA4 6152 + 5365 6136 47892 771 chain 70613 chr12 133851895 + 42238117 42238877 L1HS 6032 - 0 760 48107 760 chain 106209 chr12 133851895 + 42247953 42249219 L1PA7 6471 + 5203 6464 35208 418 3 0 93 0 2 685 4 0 63 chain 79183 chr12 133851895 + 42258004 42259171 L1PA11 4918 + 3419 4567 43959 33 5 7 108 1 0 131 2 0 142 0 1 417 6 7 66 31 26 25 0 3 8 2 1 11 6 4 23 4 6 10 0 1 13 0 1 9 2 0 16 1 0 20 4 0 8 32 23 13 7 4 11 chain 495671 chr12 133851895 + 42264031 42270098 L1PA7 6471 + 5 6464 7090 398 7 0 265 4 5 25 21 19 58 0 2 97 0 378 517 0 4 311 0 3 504 0 2 39 0 1 115 0 3 346 0 1 4 2 1 94 1 2 53 0 9 7 0 1 202 26 27 187 3 4 140 1 0 38 0 1 30 1 0 106 8 0 148 0 1 665 0 7 123 1 0 29 3 2 388 1 0 243 7 5 849 chain 25068 chr12 133851895 + 42272944 42273299 THE1D 372 - 2 372 104468 31 2 0 95 0 6 36 0 4 11 4 0 82 0 1 26 17 27 51 chain 25617 chr12 133851895 + 42308514 42308897 THE1C 375 + 0 375 101636 141 10 14 23 25 18 61 4 0 93 1 0 25 chain 23846 chr12 133851895 + 42322258 42322529 AluSq10 312 + 0 269 111210 133 2 0 136 chain 121780 chr12 133851895 + 42339472 42341038 THE1D-int 1627 - 0 1568 30454 108 0 1 61 1 0 424 3 1 238 0 1 38 13 14 53 0 1 270 1 2 356 chain 5869 chr12 133851895 + 42345158 42345233 L1PA8 5853 + 5778 5853 186483 75 chain 6958 chr12 133851895 + 42350454 42350541 L1MC4 1079 + 244 331 177757 87 chain 553693 chr12 133851895 + 42366969 42373129 L1PA3long 6157 - 0 6151 985 146 5 6 2713 1 0 29 0 1 1716 11 4 300 1 0 202 4 1 302 0 1 730 chain 27277 chr12 133851895 + 42379239 42379580 L1PA7 6471 + 4856 5191 95347 128 1 0 36 1 0 89 4 0 82 chain 30777 chr12 133851895 + 42379581 42379937 L1PA7 6471 + 5191 5544 82908 269 3 1 79 1 0 4 chain 78126 chr12 133851895 + 42379938 42380853 L1PA7 6471 + 5546 6460 44447 75 1 0 70 1 0 605 14 15 149 chain 17505 chr12 133851895 + 42385073 42385273 L1PA5 6144 - 6 207 134249 148 0 1 52 chain 20804 chr12 133851895 + 42388706 42388978 AluSp 311 + 1 268 124584 47 17 12 208 chain 127394 chr12 133851895 + 42430146 42431992 L1MA3 4352 + 2512 4352 28719 67 4 0 142 7 8 161 1 2 175 0 5 115 1 0 5 0 1 54 5 7 60 1 10 72 6 7 671 120 105 73 4 6 24 1 0 5 2 1 28 1 0 12 6 2 17 1 0 5 chain 67801 chr12 133851895 + 42435886 42436624 L1PA2 6032 - 1 739 49323 738 chain 547962 chr12 133851895 + 42437290 42443438 L1PA3long 6157 - 0 6153 1714 56 2 0 91 1 2 4 1 0 3314 1 0 791 0 1 437 0 4 208 1 0 200 0 2 554 10 11 335 0 1 142 chain 12328 chr12 133851895 + 42450889 42451024 L1PA4 6152 - 178 313 150900 135 chain 542881 chr12 133851895 + 42456782 42462912 L1PA4 6152 + 3 6141 2362 457 6 0 120 1 0 1154 0 6 272 0 6 143 0 1 2467 0 1 116 0 1 625 1 0 142 0 1 626 chain 3845 chr12 133851895 + 42466139 42466185 MLT1H1 527 - 56 102 209722 46 chain 20364 chr12 133851895 + 42468367 42468748 THE1D 372 + 0 372 126016 60 29 0 10 7 17 13 0 1 71 50 54 12 2 8 90 2 1 35 chain 13791 chr12 133851895 + 42471655 42471845 L1PA7 6471 + 6262 6452 145299 155 10 1 8 0 9 17 chain 4473 chr12 133851895 + 42473578 42473656 MADE1 96 - 1 95 201085 42 3 0 8 8 27 17 chain 21168 chr12 133851895 + 42483052 42483292 L1PA5 6144 + 5897 6137 123315 240 chain 539023 chr12 133851895 + 42504947 42511090 L1PA4 6152 + 2 6151 2988 458 6 0 116 1 0 121 1 0 202 7 0 141 1 0 116 0 3 283 0 1 269 0 10 811 0 3 1710 0 1 387 0 1 644 1 0 19 0 4 849 chain 4660 chr12 133851895 + 42511899 42511962 MLT1J 494 + 401 463 198953 53 1 0 9 chain 3746 chr12 133851895 + 42529324 42529438 L1MB7 1623 + 1393 1491 211222 29 45 30 23 4 3 13 chain 19292 chr12 133851895 + 42531327 42531580 AluY 311 + 55 301 129261 44 5 0 33 6 7 146 3 0 16 chain 119544 chr12 133851895 + 42544887 42546965 L1MA2 4263 + 2370 4116 31203 92 1 4 28 7 6 13 1 0 128 4 6 52 0 4 54 1 2 16 1 0 9 0 2 25 0 1 20 5 0 73 4 5 56 3 0 110 0 1 4 320 2 64 11 12 299 0 1 5 6 12 84 12 7 17 22 18 60 1 0 144 3 0 51 4 0 99 13 11 83 22 15 10 1 2 28 1 0 11 chain 20198 chr12 133851895 + 42560836 42561107 L1PA8 5853 + 5588 5853 126533 20 2 0 74 1 0 10 1 0 52 2 1 15 1 0 93 chain 24902 chr12 133851895 + 42599180 42599474 AluSg7 307 - 12 307 105332 163 0 1 131 chain 23110 chr12 133851895 + 42603604 42603876 AluSp 311 - 16 288 115094 272 chain 27917 chr12 133851895 + 42617488 42617843 L1PA8 5853 + 5505 5853 93289 59 1 0 44 2 0 70 2 1 14 1 0 51 1 0 16 1 0 93 chain 145109 chr12 133851895 + 42618184 42619942 L1PA7 6471 - 4 1763 25306 335 3 4 382 0 1 30 1 7 9 0 2 81 0 2 8 0 4 222 21 4 77 1 0 6 0 2 336 0 1 246 chain 134629 chr12 133851895 + 42621004 42623233 SVA_F 1814 + 335 1814 27088 552 0 1 10 350 0 32 1 0 17 0 15 53 284 0 156 131 0 643 chain 15998 chr12 133851895 + 42621582 42621916 SVA_F 1814 + 915 1089 83112 33 179 18 34 0 1 88 chain 1608 chr12 133851895 + 42621618 42621732 SVA_F 1814 + 966 1080 150129 114 chain 9723 chr12 133851895 + 42622019 42622222 SVA_F 1814 + 1191 1291 83112 16 102 0 67 1 0 17 chain 3912 chr12 133851895 + 42622070 42622116 SVA_F 1814 + 903 947 208671 34 2 0 10 chain 4032 chr12 133851895 + 42622239 42622281 SVA_F 1814 + 893 935 204252 42 chain 8129 chr12 133851895 + 42622459 42622590 SVA_F 1814 + 931 995 134926 6 3 0 10 79 15 33 chain 6708 chr12 133851895 + 42622479 42622557 SVA_F 1814 + 1011 1089 139962 78 chain 26105 chr12 133851895 + 42638562 42638851 AluY 311 + 7 295 99599 22 1 0 266 chain 5270 chr12 133851895 + 42642344 42642417 L1PA11 4918 - 416 486 192320 13 1 0 15 2 0 42 chain 483745 chr12 133851895 + 42642718 42648466 L1PA6 6164 - 4 6164 7597 8 3 0 83 0 4 571 0 5 356 2 1 459 1 0 129 7 8 1190 0 2 43 0 1 59 0 4 8 4 6 33 0 1 429 0 3 381 0 12 38 0 1 173 0 1 241 0 8 473 8 7 185 1 0 117 0 1 303 0 17 225 8 7 51 2 0 67 5 363 22 3 4 60 chain 13650 chr12 133851895 + 42655385 42655542 L1PA3long 6157 - 1 160 145781 5 0 2 152 chain 20148 chr12 133851895 + 42666880 42667265 LTR12C 1709 - 673 1059 126685 17 17 58 87 0 2 35 1 0 68 0 41 25 82 0 53 chain 49038 chr12 133851895 + 42672367 42673001 L1PA8 5853 + 5217 5853 59723 119 1 8 110 0 1 31 0 1 75 1 0 47 2 0 60 11 10 9 1 0 52 2 1 19 1 0 93 chain 17737 chr12 133851895 + 42675417 42675627 AluSp 311 + 11 221 133600 210 chain 8965 chr12 133851895 + 42693427 42693759 MLT1A 405 - 25 397 165796 6 0 2 47 181 221 49 3 5 23 4 0 19 chain 5117 chr12 133851895 + 42712613 42712676 L1MC4 1079 + 194 257 193890 63 chain 77290 chr12 133851895 + 42723581 42724896 LTR5B 1012 - 3 1012 44837 259 0 2 164 0 1 95 1 0 114 10 9 210 7 21 6 1 0 44 320 0 84 chain 126639 chr12 133851895 + 42743214 42744811 SVA_B 1603 - 6 1603 28908 580 9 0 9 8 18 41 0 1 13 0 1 27 0 1 13 0 1 68 36 0 71 2 0 39 13 53 547 2 0 43 3 32 18 15 0 9 19 0 12 chain 1996 chr12 133851895 + 42743993 42744018 SVA_B 1603 - 871 896 95508 25 chain 17389 chr12 133851895 + 42751718 42751972 L1PB4 2604 - 52 296 134542 37 7 0 108 2 1 29 2 0 69 chain 87530 chr12 133851895 + 42781520 42782513 LTR5B 1012 + 0 1012 40558 123 0 14 380 0 1 307 0 4 183 chain 3804 chr12 133851895 + 42802190 42802237 MADE1 96 + 39 90 210323 6 0 4 41 chain 109888 chr12 133851895 + 42806111 42808600 L1PB3 3668 - 56 1828 34241 12 6 7 11 1 0 12 8 4 35 85 71 66 54 12 91 0 2 94 0 1 59 0 3 118 6 3 7 1 0 17 0 2 79 0 4 56 0 4 148 3 0 16 1 0 12 1 0 54 2 3 152 359 3 47 0 2 86 325 0 101 97 108 20 0 1 154 22 24 71 chain 97783 chr12 133851895 + 42821121 42822563 L1PB1 5432 + 4016 5420 37341 13 0 1 61 1 0 153 0 14 4 0 1 73 5 1 467 1 0 17 1 0 189 2 0 5 0 2 18 1 7 6 5 0 4 1 0 51 3 0 10 8 7 18 1 0 4 32 25 27 4 0 26 2 1 16 1 0 17 5 4 16 8 7 15 2 0 6 2 0 11 11 0 9 7 5 5 1 0 9 4 0 5 2 0 24 1 0 21 1 0 13 1 0 16 chain 228872 chr12 133851895 + 42837367 42840501 HERVK22-int 3844 + 85 3840 17365 36 2 1 17 0 3 151 0 2 408 0 3 230 0 4 77 1 0 1062 0 3 46 2 1 27 0 4 118 4 8 127 0 1 205 73 28 168 67 82 70 79 710 67 8 7 89 chain 8732 chr12 133851895 + 42848529 42848621 HY3 101 + 8 100 167012 92 chain 3129 chr12 133851895 + 42888654 42888687 Tigger1 2417 - 640 673 222387 33 chain 8190 chr12 133851895 + 42926240 42926392 MER33 330 - 40 197 170005 41 1 0 27 3 0 5 0 3 11 18 24 46 chain 17534 chr12 133851895 + 42937643 42937973 Tigger2a 444 - 96 442 134174 27 16 20 20 0 5 45 4 10 77 3 0 5 52 56 81 chain 16783 chr12 133851895 + 42976500 42976733 MER30 238 + 0 238 136156 103 18 23 112 chain 43610 chr12 133851895 + 43001411 43002041 MER41B 635 + 0 635 64674 81 10 11 34 6 7 251 1 6 59 18 17 11 4 5 106 0 1 16 3 0 30 chain 91278 chr12 133851895 + 43003873 43005144 LTR12C 1709 - 0 1709 39204 84 8 7 158 0 1 231 11 4 106 3 1 5 1 0 19 0 160 85 0 118 216 5 6 25 10 13 9 9 0 35 34 209 71 1 0 6 0 1 139 chain 28366 chr12 133851895 + 43047088 43047414 AluYb8 318 - 9 318 91710 16 17 0 293 chain 517378 chr12 133851895 + 43047414 43053308 L1PA4 6152 - 244 6142 5440 1954 0 1 264 1 0 530 6 5 1012 0 1 295 0 5 605 1 0 397 17 0 4 0 17 808 chain 36656 chr12 133851895 + 43085733 43086288 MER51A 677 + 1 658 74016 175 2 137 16 0 18 16 0 1 9 1 6 42 57 0 237 chain 6012 chr12 133851895 + 43089360 43089448 MER51A 677 + 176 254 185120 24 10 0 54 chain 14427 chr12 133851895 + 43091672 43091857 Tigger3a 397 - 0 215 143130 102 0 30 83 chain 520373 chr12 133851895 + 43101704 43108209 L1PA7 6471 + 8 6465 5117 389 6 7 273 9 10 487 0 10 194 0 1 325 1 3 16 0 22 22 3 7 40 0 5 331 10 15 43 0 1 377 48 13 42 0 4 147 91 0 202 0 2 224 0 3 280 1 0 19 9 1 22 0 3 32 0 2 24 0 1 216 20 6 166 4 9 253 0 2 23 1 2 33 0 3 165 0 1 105 0 1 85 0 4 175 3 0 93 2 0 85 0 1 319 1 0 14 0 1 88 0 1 11 0 5 118 7 11 18 0 3 32 0 2 25 0 4 11 0 2 163 1 0 273 0 1 328 chain 514108 chr12 133851895 + 43113629 43119552 L1PA4 6152 - 9 5944 5765 667 39 0 156 0 1 530 0 22 126 0 5 284 0 4 665 1 3 476 0 1 624 6 10 41 2 0 260 0 1 183 0 3 235 0 5 419 2 7 1207 chain 25821 chr12 133851895 + 43126256 43126618 THE1C 375 + 4 375 100789 39 0 3 4 1 0 79 6 10 43 1 2 6 1 0 139 0 1 17 0 2 26 chain 3022 chr12 133851895 + 43147708 43147747 L1MA4 2864 + 2758 2801 224583 6 0 4 33 chain 22644 chr12 133851895 + 43159198 43159492 AluY 311 + 19 302 117357 44 2 1 54 5 0 14 0 1 5 7 1 163 chain 26680 chr12 133851895 + 43191200 43191506 AluY 311 + 6 311 97384 121 1 0 184 chain 25861 chr12 133851895 + 43191697 43192017 AluY 311 + 0 305 100600 133 19 1 56 0 3 112 chain 25319 chr12 133851895 + 43202714 43203004 AluYk4 311 - 16 306 103127 290 chain 6713 chr12 133851895 + 43207585 43207664 MLT1E1 597 + 517 596 179592 79 chain 332393 chr12 133851895 + 43227221 43232159 L1PB1 5432 - 10 4610 12113 18 1 0 12 1 0 22 1 0 10 15 0 5 0 13 10 52 43 9 1 0 44 1 0 15 2 1 52 2 0 9 5 1 14 1 0 6 1 0 24 72 16 474 1 2 32 0 1 39 1 0 68 4 7 169 0 1 141 1 2 4 1 0 159 7 9 116 7 3 142 2 0 202 12 6 299 0 1 10 1 0 238 0 1 78 0 3 49 1 0 7 0 1 56 0 2 197 0 1 35 0 3 36 0 1 12 1 0 9 0 1 99 0 6 105 0 3 404 1 2 14 1 6 111 14 30 257 8 9 16 19 24 39 6 7 97 0 1 21 0 2 191 304 0 125 6 5 5 0 1 79 chain 42249 chr12 133851895 + 43254203 43254747 MLT2A2 560 - 4 560 66335 143 0 11 335 4 5 62 chain 139492 chr12 133851895 + 43269654 43271193 L1PA3long 6157 - 0 1539 26223 1539 chain 48124 chr12 133851895 + 43271193 43271726 L1PA3long 6157 + 4076 4609 60123 533 chain 7985 chr12 133851895 + 43280572 43280747 L1PB1 5432 + 5267 5424 171137 14 1 0 15 1 0 4 19 8 19 8 5 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 282280 chr12 133851895 + 43289646 43292841 L1PA5 6144 - 0 3200 14520 2658 0 4 228 0 1 309 chain 20911 chr12 133851895 + 43300668 43301001 THE1B 368 - 0 368 124240 56 15 14 10 1 3 76 11 13 28 1 0 25 0 4 56 11 40 43 chain 275694 chr12 133851895 + 43333730 43337658 L1PA10 4194 - 34 3958 14887 10 1 0 7 0 1 25 4 1 462 0 4 55 7 30 13 8 6 106 0 1 113 5 9 287 0 1 4 4 0 247 0 1 8 0 1 4 53 58 23 3 7 21 4 0 367 22 25 204 3 0 247 0 1 51 1 0 290 1 2 83 3 5 153 9 17 97 1 2 135 0 4 383 6 7 89 23 22 25 17 6 33 7 6 6 7 0 11 0 3 6 1 0 4 106 77 8 1 0 15 2 0 21 1 0 9 1 0 5 chain 125220 chr12 133851895 + 43345889 43347458 THE1A-int 1579 + 0 1579 29315 50 1 0 20 6 10 130 2 0 444 0 3 401 1 2 367 11 16 136 chain 23779 chr12 133851895 + 43572819 43573117 AluY 311 + 5 305 111597 126 10 12 162 chain 52231 chr12 133851895 + 43580654 43581243 L1PA5 6144 - 1 601 57478 316 0 1 137 0 10 136 chain 21700 chr12 133851895 + 43582895 43583240 THE1B 368 + 0 368 121391 44 0 15 108 6 5 29 45 53 106 0 1 7 chain 170134 chr12 133851895 + 43586106 43588390 L1PB1 5432 - 8 2269 22032 4 1 0 16 1 0 12 1 0 22 1 0 24 2 0 14 8 5 13 26 14 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 13 1 0 20 13 11 201 0 1 280 2 0 191 1 0 6 0 2 865 5 11 63 1 0 4 0 1 234 3 2 36 1 8 35 chain 5351 chr12 133851895 + 43599569 43599640 L1MA4A 3247 + 3060 3130 191530 47 1 0 23 chain 117249 chr12 133851895 + 43617942 43619392 LTR12C 1709 + 0 1709 32039 338 0 43 269 0 119 68 1 0 273 1 0 7 3 1 100 4 0 6 0 4 211 2 103 167 chain 541718 chr12 133851895 + 43621531 43627550 L1PA3long 6157 + 0 6157 2555 151 1 2 623 0 128 52 0 4 2302 0 1 1245 1 2 800 0 4 86 0 3 747 4 0 7 chain 20563 chr12 133851895 + 43636750 43637049 AluSp 311 + 0 297 125421 52 12 8 57 4 0 95 22 28 57 chain 10267 chr12 133851895 + 43643055 43643393 L1PB1 5432 + 5114 5422 159294 24 8 6 12 2 0 3 2 0 9 2 0 52 149 130 20 1 0 22 1 0 12 1 0 18 chain 18900 chr12 133851895 + 43660527 43660841 THE1D 372 - 4 324 130367 123 25 24 18 23 25 46 0 4 49 4 5 26 chain 114920 chr12 133851895 + 43668400 43669964 L1PA8A 6298 + 4285 5809 32816 108 1 5 205 41 4 37 17 0 181 2 0 217 3 8 6 11 0 76 0 1 115 4 6 215 0 4 12 3 6 96 0 7 164 0 1 50 chain 22536 chr12 133851895 + 43694905 43695242 THE1B 368 + 0 342 117867 29 0 5 91 0 1 43 1 0 31 1 0 9 5 9 14 1 0 10 1 0 60 11 10 30 chain 6324 chr12 133851895 + 43697252 43697374 THE1B 368 - 19 138 182606 20 25 23 62 3 2 12 chain 14924 chr12 133851895 + 43702693 43702908 L1PA15 4387 - 336 560 141564 43 11 21 55 1 0 105 chain 3284 chr12 133851895 + 43706390 43706425 MER4A1 472 + 423 458 219294 35 chain 87971 chr12 133851895 + 43722280 43723675 L1PA13 3608 - 120 1390 40387 22 1 0 18 2 0 4 2 0 48 3 1 4 1 0 56 1 0 52 11 9 67 155 3 6 1 0 5 0 1 31 13 58 687 4 0 7 3 0 51 0 3 6 3 0 131 chain 11115 chr12 133851895 + 43725519 43725657 L1PREC2 3366 - 1649 1787 155759 138 chain 46281 chr12 133851895 + 43735478 43736092 MER41B 635 + 0 620 61788 122 4 5 313 24 28 39 0 1 112 chain 28612 chr12 133851895 + 43752359 43752660 AluYg6 310 + 0 301 90686 301 chain 14478 chr12 133851895 + 43767209 43767397 MER30 238 - 0 207 142958 106 5 24 77 chain 29125 chr12 133851895 + 43767473 43767781 AluYa5 310 - 2 310 88436 308 chain 306897 chr12 133851895 + 43778263 43782282 L1PA7 6471 - 4 6466 13136 9 0 2 121 15 16 5 3 0 183 1 0 130 5 4 39 3 4 308 2 3 19 1 4 17 0 4 410 10 7 62 0 1299 209 0 1 214 0 1171 962 0 7 7 12 6 396 3 5 121 55 13 59 6 7 123 0 1 89 15 18 241 14 10 47 0 6 103 chain 22377 chr12 133851895 + 43834625 43834891 AluY 311 + 40 305 118598 242 1 0 23 chain 38336 chr12 133851895 + 43850352 43850868 LTR10A 586 - 12 586 71673 61 12 10 106 0 1 107 7 8 38 0 58 185 chain 65948 chr12 133851895 + 43852596 43853376 LTR17 781 + 0 781 50126 326 0 1 454 chain 558240 chr12 133851895 + 43864776 43870811 L1PA2 6032 + 1 6032 479 3074 1 0 1522 3 0 1435 chain 9513 chr12 133851895 + 43874939 43875061 MER85 139 - 0 131 163008 22 1 0 8 0 10 91 chain 47216 chr12 133851895 + 43907313 43907863 L1PA4 6152 + 5591 6141 61032 27 1 0 372 1 2 149 chain 23833 chr12 133851895 + 43908097 43908392 AluSc5 308 + 12 308 111294 88 0 1 207 chain 73494 chr12 133851895 + 43926358 43927138 L1HS 6032 - 2 782 46786 780 chain 94502 chr12 133851895 + 43927138 43928147 L1HS 6032 + 4226 5235 38206 1009 chain 18272 chr12 133851895 + 43932138 43932455 L1MA1 4479 - 289 588 132146 18 7 0 6 29 24 26 11 9 5 0 1 23 1 0 126 9 5 56 chain 136536 chr12 133851895 + 43951021 43952928 L1PB1 5432 - 5 1871 26738 7 2 0 16 7 6 6 1 0 22 1 0 24 2 0 14 1 0 4 1 0 16 20 10 6 3 0 16 11 3 41 1 0 15 2 1 51 2 0 10 2 0 3 2 0 10 1 0 5 0 2 22 62 15 388 0 1 87 8 6 410 1 0 5 0 2 246 0 1 174 5 40 6 0 7 168 chain 14901 chr12 133851895 + 43957088 43957403 AluYb9 318 - 1 183 141627 19 2 0 149 131 0 14 chain 41920 chr12 133851895 + 43976468 43976994 L1PA7 6471 + 5917 6461 66732 209 5 6 153 20 37 139 chain 132251 chr12 133851895 + 43977576 43979049 L1P1 4361 - 33 1496 27574 23 1 0 155 1 0 1264 8 0 21 chain 42065 chr12 133851895 + 43979049 43979499 L1HS 6032 + 5582 6032 66538 450 chain 36954 chr12 133851895 + 44000000 44000406 L1PA3long 6157 + 5751 6157 73577 406 chain 292891 chr12 133851895 + 44003294 44006781 L1PA6 6164 + 2669 6162 13829 516 1 0 4 0 1 84 2 1 136 0 1 324 6 5 397 0 1 350 1 2 8 0 5 1499 1 3 5 1 0 118 0 1 24 2 0 8 chain 97453 chr12 133851895 + 44016260 44017323 L1PA3long 6157 - 5 1068 37442 1063 chain 62245 chr12 133851895 + 44017323 44018011 L1PA3long 6157 + 4428 5115 51673 243 1 0 444 chain 5357 chr12 133851895 + 44020371 44020445 L1MCa 1829 - 39 111 191461 51 2 0 21 chain 119299 chr12 133851895 + 44034933 44036364 L1PA7 6471 - 1 1439 31293 104 9 7 232 0 18 346 4 0 60 8 2 84 0 3 113 2 0 469 chain 35375 chr12 133851895 + 44042676 44043145 MER41A 554 + 0 466 75699 42 0 1 6 1 0 100 4 3 107 1 2 61 0 1 19 15 11 113 chain 163031 chr12 133851895 + 44078148 44080137 SVA_D 2077 + 0 2067 22936 28 0 11 140 13 13 187 1 0 512 17 59 10 0 1 43 0 17 13 1 2 12 0 1 37 0 1 96 93 0 151 0 98 635 chain 5336 chr12 133851895 + 44079270 44079351 SVA_D 2077 + 969 1056 63856 17 0 4 44 2 4 18 chain 73724 chr12 133851895 + 44082002 44082969 L1PA15 4387 + 2220 3190 46662 118 0 1 78 0 1 30 0 1 21 0 1 172 2 1 84 0 1 312 1 2 125 3 1 21 chain 22709 chr12 133851895 + 44086806 44087086 AluY 311 + 0 303 117035 19 0 13 25 0 1 180 0 9 56 chain 106745 chr12 133851895 + 44091380 44092887 L1MA2 4263 - 150 1664 35046 8 1 0 17 7 11 8 4 0 11 7 0 92 1 0 9 2 1 29 3 2 115 4 1 110 0 1 36 1 0 71 1 0 6 4 1 15 7 8 180 6 23 82 0 2 6 0 1 351 5 7 127 2 1 53 5 8 121 chain 144868 chr12 133851895 + 44096477 44098522 HUERS-P3b-int 2065 + 13 2031 25347 47 6 5 21 11 8 223 0 1 255 8 5 25 1 0 84 4 0 69 1 5 13 1 0 55 1 0 25 2 1 126 2 1 238 0 1 167 1 2 81 1 0 44 8 6 16 0 1 12 2 1 5 0 1 57 4 3 20 1 0 53 1 2 4 1 0 29 9 8 56 12 10 16 6 3 16 3 0 49 5 1 57 1 0 90 chain 25181 chr12 133851895 + 44100816 44101195 L1M1 2793 - 109 499 103839 11 1 0 4 0 3 38 16 21 15 0 1 35 0 2 5 2 0 104 6 5 96 0 2 4 1 0 35 0 3 6 chain 16014 chr12 133851895 + 44107851 44108082 MER1B 344 + 95 335 138319 101 9 20 54 9 7 58 chain 42937 chr12 133851895 + 44120644 44121357 L1PA15 4387 + 3661 4366 65493 111 2 3 26 7 14 76 2 1 5 0 1 35 1 0 116 0 1 53 2 1 25 1 0 55 2 1 15 0 1 6 4 0 10 1 0 39 16 14 26 52 46 14 1 0 10 chain 84783 chr12 133851895 + 44145009 44145967 L1PA5 6144 - 7 965 41600 654 4 0 188 0 4 112 chain 21893 chr12 133851895 + 44214622 44214876 AluY 311 + 0 261 120649 76 0 6 50 0 1 128 chain 27945 chr12 133851895 + 44239350 44239716 L1PA6 6164 - 2 367 93187 144 2 3 11 2 1 170 0 1 4 1 0 26 1 0 5 chain 72478 chr12 133851895 + 44241620 44242680 MER11A 1151 - 0 1144 47279 27 9 13 123 6 7 60 0 1 36 67 22 26 0 26 121 12 14 136 0 1 84 0 1 12 0 1 146 4 0 63 0 4 11 0 1 39 0 91 78 chain 13605 chr12 133851895 + 44253837 44253997 L1PA7 6471 - 10 169 145958 140 1 0 19 chain 104820 chr12 133851895 + 44257519 44258998 LTR12C 1709 + 0 1709 35546 122 0 1 5 1 0 134 0 1 23 5 1 6 0 9 162 14 9 106 1 0 75 0 119 64 1 0 66 0 78 71 20 69 94 44 13 64 4 22 183 2 0 116 13 12 78 0 1 5 chain 23634 chr12 133851895 + 44260616 44260915 AluSp 311 + 5 301 112394 225 0 1 38 2 1 14 3 0 17 chain 9778 chr12 133851895 + 44265206 44265358 L1PA11 4918 - 411 560 161709 19 1 0 15 2 0 65 17 17 33 chain 27498 chr12 133851895 + 44278468 44278890 MER83 447 + 1 430 94658 73 0 2 67 12 11 11 1 17 164 7 0 55 18 15 14 chain 544247 chr12 133851895 + 44300286 44306308 L1PA3long 6157 + 0 6155 2180 153 0 1 627 0 128 1246 1 0 9 0 1 1101 0 4 2885 chain 56904 chr12 133851895 + 44322400 44323023 L1PA3long 6157 - 0 624 54591 4 0 1 619 chain 10579 chr12 133851895 + 44344370 44344517 MER50 708 + 98 251 157917 73 7 13 67 chain 283903 chr12 133851895 + 44345908 44349630 L1PA10 4194 + 398 4122 14421 5 1 0 81 2 0 405 2 0 526 17 11 111 1 0 80 0 1 350 2 0 164 12 10 86 0 1 214 0 2 184 0 1 33 2 0 14 8 12 17 0 4 264 0 15 210 4 1 94 0 1 106 0 2 60 18 8 209 0 1 165 1 2 63 6 9 197 3 0 5 chain 22050 chr12 133851895 + 44359717 44360000 L1PA16 3655 - 69 349 120022 9 3 0 271 chain 2926 chr12 133851895 + 44366369 44366414 LTR12 884 - 742 804 226571 27 1 18 17 chain 249805 chr12 133851895 + 44370550 44373722 HERVK22-int 3844 - 0 3843 16268 89 12 11 74 0 653 45 14 12 52 1 16 347 1 0 553 17 12 416 0 4 812 0 5 207 2 1 364 1 2 47 0 3 118 chain 5512 chr12 133851895 + 44377274 44377350 MADE1 96 + 1 93 189922 40 4 20 32 chain 22650 chr12 133851895 + 44401420 44401728 THE1B 368 + 0 306 117324 168 2 1 33 9 7 92 0 1 4 chain 59319 chr12 133851895 + 44416906 44417561 L1PA4 6152 - 278 933 53213 655 chain 18507 chr12 133851895 + 44417561 44417765 L1PA4 6152 + 5936 6140 131478 204 chain 42190 chr12 133851895 + 44422136 44422660 MER41A 554 + 0 533 66405 228 0 1 284 0 8 12 chain 21430 chr12 133851895 + 44424045 44424449 MER41-int 2638 + 112 484 122409 58 32 18 25 6 3 14 1 3 15 1 0 5 18 7 36 4 0 118 13 14 23 1 0 7 2 1 25 chain 7335 chr12 133851895 + 44424455 44424542 MER85 139 + 5 92 175192 87 chain 3734 chr12 133851895 + 44431570 44431757 MER52A 1651 + 809 993 211409 13 2 40 11 25 23 20 9 0 17 63 33 27 chain 18365 chr12 133851895 + 44434909 44435110 L1PA4 6152 - 11 212 131893 201 chain 30880 chr12 133851895 + 44436187 44436564 MLT2A1 477 + 0 382 82717 142 0 1 19 7 11 209 chain 303180 chr12 133851895 + 44436651 44440800 HERVL-int 5654 + 0 5643 13275 69 0 1 79 1 0 95 1 14 40 0 1 112 5 7 237 1 0 80 0 4 47 0 1 352 0 4 12 0 11 228 0 1767 106 1 0 109 0 10 476 16 6 422 4 0 43 0 7 66 0 4 104 300 16 6 6 0 46 27 0 26 0 1 183 0 1 34 8 13 376 1 0 137 2 0 81 0 1 75 2 0 133 chain 40804 chr12 133851895 + 44442848 44443330 L1PA8A 6298 + 5811 6291 68166 197 1 0 158 1 0 125 chain 14370 chr12 133851895 + 44448545 44448725 L1PA5 6144 - 1 179 143304 10 3 1 167 chain 72490 chr12 133851895 + 44472520 44473385 L1PA7 6471 - 7 868 47271 88 8 0 7 1 9 40 3 0 189 1 0 130 0 1 379 1 0 18 chain 29800 chr12 133851895 + 44473952 44474322 THE1C 375 - 2 375 85432 23 1 0 211 0 4 135 chain 189663 chr12 133851895 + 44489562 44491672 L1PA4 6152 + 4031 6151 20088 325 0 4 1676 0 6 109 chain 9126 chr12 133851895 + 44494727 44494973 MLT1A0 366 - 40 301 164940 49 55 57 28 22 23 47 20 32 25 chain 29244 chr12 133851895 + 44496539 44496914 THE1C 375 + 0 375 87825 334 5 6 10 1 0 25 chain 567004 chr12 133851895 + 44502014 44508037 L1HS 6032 - 7 6032 89 2048 0 2 3975 chain 18792 chr12 133851895 + 44509038 44509256 L1PA5 6144 + 5911 6129 130702 218 chain 204368 chr12 133851895 + 44516792 44519944 L1PA11 4918 - 340 3160 18899 11 2 0 13 1 0 15 13 9 10 21 12 20 1 0 14 2 0 43 6 9 28 5 4 27 0 6 32 1 0 20 16 15 102 3 0 522 1 0 130 1 0 191 0 1 540 0 1 116 8 0 20 1 3 38 1 0 64 5 6 15 0 1 56 303 0 35 2 0 5 0 3 23 2 0 21 13 10 52 1 0 93 0 1 110 0 1 73 2 1 64 11 12 100 6 8 58 1 2 12 12 4 38 chain 17667 chr12 133851895 + 44545166 44545367 L1PA4 6152 - 3 205 133779 172 0 1 29 chain 61389 chr12 133851895 + 44563554 44564242 L1PA5 6144 + 5441 6129 52156 688 chain 28451 chr12 133851895 + 44564816 44565117 AluYa5 310 - 9 310 91367 301 chain 4143 chr12 133851895 + 44572650 44572696 MLT2B3 573 - 0 46 205337 46 chain 190645 chr12 133851895 + 44574155 44576234 L1PA2 6032 - 0 2080 19985 368 0 1 1711 chain 15827 chr12 133851895 + 44576234 44576406 L1PA2 6032 + 3745 3917 138858 172 chain 5900 chr12 133851895 + 44582843 44582970 L1MA4 2864 - 30 141 186185 17 16 8 42 2 0 25 12 6 13 chain 22728 chr12 133851895 + 44607334 44607643 THE1C 375 + 16 330 116938 125 1 5 37 10 11 136 chain 127223 chr12 133851895 + 44643155 44644786 L1PA8 5853 + 4226 5853 28762 69 12 11 704 0 2 81 0 1 470 1 0 44 2 0 51 0 2 17 21 18 44 2 1 19 2 1 92 chain 53929 chr12 133851895 + 44648451 44649054 L1PA4 6152 - 9 612 56415 603 chain 13523 chr12 133851895 + 44649054 44649199 L1PA4 6152 + 5280 5425 146270 145 chain 61038 chr12 133851895 + 44664057 44664973 L1PB 1623 - 241 1094 52313 77 15 5 18 1 0 117 0 1 288 22 21 68 27 0 25 52 27 206 chain 90633 chr12 133851895 + 44666110 44667150 L1PA5 6144 + 5087 6135 39412 210 0 4 31 1 0 659 7 12 132 chain 125296 chr12 133851895 + 44676032 44677569 THE1A-int 1579 + 0 1570 29301 208 0 16 135 0 1 44 1 14 201 3 4 31 0 2 914 chain 9438 chr12 133851895 + 44678131 44678242 THE1A 353 + 242 353 163372 111 chain 4340 chr12 133851895 + 44723307 44723364 MER31B 477 + 419 477 202719 42 0 1 15 chain 181411 chr12 133851895 + 44746084 44748103 L1PA4 6152 - 4 2029 20855 19 0 1 1776 0 4 110 0 1 114 chain 43511 chr12 133851895 + 44748103 44748579 L1PA4 6152 + 3640 4116 64798 476 chain 6979 chr12 133851895 + 44759556 44759632 L1PA5 6144 - 16 92 177613 76 chain 22588 chr12 133851895 + 44795755 44796100 THE1B 368 - 0 368 117645 61 2 1 63 35 45 30 1 0 100 9 24 44 chain 23363 chr12 133851895 + 44809974 44810306 L1PA8 5853 + 5529 5853 113853 35 1 0 44 2 0 70 2 1 12 2 0 53 1 0 16 2 1 92 chain 5852 chr12 133851895 + 44824801 44824868 L1PA7 6471 + 6388 6455 186663 67 chain 33316 chr12 133851895 + 44829043 44829568 L1PA16 3655 + 3127 3621 78712 77 1 0 15 0 1 71 2 0 118 15 15 100 8 5 49 3 0 10 40 17 16 chain 235665 chr12 133851895 + 44844248 44847125 HERVH-int 3825 + 0 3120 16995 333 5 4 34 0 1 20 29 28 26 75 305 12 0 2 14 13 16 338 0 4 258 0 1 674 0 1 275 0 4 251 1 0 519 chain 29503 chr12 133851895 + 44849438 44849837 LTR7 482 + 0 469 86625 69 8 46 109 8 40 43 0 1 4 1 0 157 chain 6851 chr12 133851895 + 44862898 44863068 Tigger3a 397 - 171 397 178581 54 0 10 23 71 117 22 chain 21774 chr12 133851895 + 44863923 44864234 L1PA8 5853 + 5548 5853 121116 16 1 0 44 2 0 71 1 0 8 0 3 9 3 0 43 1 0 18 4 3 90 chain 61975 chr12 133851895 + 44866279 44867180 L1PA13 3608 - 2237 3126 51910 187 1 0 76 39 37 123 0 1 45 1 0 154 5 8 105 6 4 96 2 1 18 2 0 15 2 1 4 1 0 8 5 0 6 chain 31082 chr12 133851895 + 44868170 44868676 L1M1 2793 - 1219 1712 82377 12 8 12 54 0 2 98 12 0 32 16 20 60 18 11 23 4 0 6 0 1 61 1 0 101 chain 6580 chr12 133851895 + 44871558 44871652 HUERS-P3-int 2218 + 649 743 180612 56 1 0 5 2 3 30 chain 24080 chr12 133851895 + 44878268 44878642 THE1C 375 - 0 375 109871 18 8 7 155 15 16 115 3 6 38 11 9 11 chain 12231 chr12 133851895 + 44893849 44893995 LTR12D 1347 - 0 150 151296 64 0 4 82 chain 3776 chr12 133851895 + 44894741 44894968 LTR12C 1709 + 997 1068 210722 20 80 2 26 79 1 22 chain 3320 chr12 133851895 + 44896228 44896263 LTR12D 1347 - 811 846 218597 35 chain 6990 chr12 133851895 + 44911268 44911352 MSTA 426 + 333 417 177537 84 chain 24398 chr12 133851895 + 44915067 44915328 AluYa5 310 + 36 297 108089 261 chain 26894 chr12 133851895 + 44946767 44947054 L1HS 6032 + 5734 6021 96646 287 chain 400470 chr12 133851895 + 44952144 44957105 L1PA7 6471 + 0 6468 10080 158 1 0 4 34 19 137 0 1 84 1 2 271 0 1503 12 1 0 447 3 4 340 0 1 79 0 1 543 2 0 226 1 0 81 1 2 320 0 1 127 6 7 181 3 2 111 0 11 476 22 26 444 1 0 424 0 1 195 0 3 64 16 15 145 chain 82723 chr12 133851895 + 44970339 44971248 L1PA3long 6157 - 5 918 42450 143 1 5 765 chain 18462 chr12 133851895 + 44987639 44987847 L1PA7 6471 + 6034 6242 131607 208 chain 5820 chr12 133851895 + 44987860 44987927 L1PA7 6471 + 6246 6313 186944 67 chain 11469 chr12 133851895 + 44987935 44988080 L1PA7 6471 + 6322 6464 154428 137 3 0 5 chain 28710 chr12 133851895 + 45011188 45011502 AluYa5 310 + 0 309 90292 127 5 0 182 chain 25059 chr12 133851895 + 45017624 45017924 L1PA7 6471 + 6165 6466 104513 155 0 1 145 chain 249562 chr12 133851895 + 45027953 45031093 L1PA7 6471 - 2 3065 16279 12 6 1 128 1 0 4 0 1 172 0 1 51 1 0 299 112 1 99 0 2 77 1 0 315 5 4 728 1 2 191 0 1 479 17 48 300 0 4 22 1 0 5 0 2 22 0 1 91 chain 9015 chr12 133851895 + 45028633 45028739 L1PA7 6471 - 227 333 161253 106 chain 61518 chr12 133851895 + 45051266 45051980 L1PA7 6471 - 4 717 52108 8 2 0 44 0 1 660 chain 535500 chr12 133851895 + 45075202 45081213 L1PA3long 6157 - 0 6157 3518 2640 0 2 252 0 1 866 0 4 391 1 0 560 0 1 536 0 128 348 0 10 265 0 1 152 chain 3744 chr12 133851895 + 45103493 45103534 MER5A1 166 + 83 124 211270 41 chain 28091 chr12 133851895 + 45129784 45130091 AluYg6 310 - 3 310 92681 307 chain 3193 chr12 133851895 + 45133935 45133972 MLT1L 557 + 177 214 221057 37 chain 544438 chr12 133851895 + 45135100 45141227 L1PA4 6152 + 0 6136 2150 460 6 0 120 1 0 482 0 2 254 0 6 149 0 1 726 0 2 1157 2 0 530 0 2 49 0 1 410 0 4 1781 chain 3842 chr12 133851895 + 45141260 45141392 Tigger2 2703 + 2529 2664 209764 37 74 77 21 chain 207056 chr12 133851895 + 45178237 45180824 L1PA8 5853 + 3267 5853 18714 324 5 4 312 0 1 271 0 3 37 0 1 101 1 0 13 1 0 117 0 1 378 4 5 171 1 0 4 3 1 22 3 6 61 0 1 463 1 0 44 7 5 61 6 5 9 2 1 10 0 1 40 2 1 19 1 0 93 chain 13354 chr12 133851895 + 45184999 45185269 L1PB1 5432 + 5103 5346 146868 11 1 0 24 1 0 9 1 0 9 6 2 11 2 0 51 2 1 16 1 0 43 1 0 16 3 0 7 14 5 16 11 8 14 chain 5455 chr12 133851895 + 45204765 45204829 L1PA8 5853 + 5499 5564 190469 5 0 1 59 chain 3596 chr12 133851895 + 45204830 45204874 L1PA8 5853 + 5564 5608 213720 44 chain 16024 chr12 133851895 + 45204876 45205124 L1PA8 5853 + 5608 5853 138297 77 12 11 37 9 8 19 9 8 85 chain 30031 chr12 133851895 + 45212508 45212824 AluYb8 318 - 2 318 84721 316 chain 23892 chr12 133851895 + 45219546 45219837 AluSp 311 + 0 296 110945 91 0 3 186 0 2 14 chain 66114 chr12 133851895 + 45220961 45222044 L1MA3 4352 - 20 1057 50047 4 1 0 14 1 0 26 15 9 19 2 0 80 1 0 42 95 51 154 0 3 27 48 57 155 0 1 287 10 8 9 2 0 91 chain 24218 chr12 133851895 + 45256741 45257029 L1PA7 6471 - 14 301 109111 125 4 3 159 chain 46328 chr12 133851895 + 45258620 45259117 L1HS 6032 - 469 966 61746 497 chain 44793 chr12 133851895 + 45259117 45259607 L1HS 6032 + 5540 6030 63302 490 chain 517661 chr12 133851895 + 45291108 45297827 L1PA7 6471 + 4 6468 5406 144 0 6 6 7 1 237 0 3 10 0 1 262 17 18 47 12 20 189 0 4 296 0 6 10 21 15 69 0 1 4 1 0 9 1 2 404 12 6 252 0 1 339 0 2 272 0 1 753 1 0 38 285 0 43 1 0 222 0 1 126 0 1 9 10 9 157 1 0 3 1 0 484 0 1 342 1 0 639 0 5 86 3 9 34 0 1 21 0 2 160 0 1 532 0 1 122 0 1 24 chain 9666 chr12 133851895 + 45305658 45305762 L1PA4 6152 + 6047 6151 162263 104 chain 6193 chr12 133851895 + 45306649 45306725 MIR 256 + 37 113 183632 76 chain 554741 chr12 133851895 + 45325488 45331634 L1PA3long 6157 + 6 6157 856 430 2 0 726 0 3 4145 0 4 843 chain 64048 chr12 133851895 + 45333086 45333799 L1PA4 6152 + 5324 6038 50987 534 0 1 179 chain 8801 chr12 133851895 + 45333799 45333900 L1PA4 6152 + 6039 6140 166638 101 chain 558642 chr12 133851895 + 45344741 45350771 L1PA2 6032 + 0 6032 436 252 9 8 422 0 3 5347 chain 28550 chr12 133851895 + 45368120 45368675 L1PB1 5432 - 9 524 90962 5 1 0 14 14 13 21 1 0 24 2 0 15 1 0 4 7 5 14 28 16 11 1 0 44 1 0 16 2 1 52 2 0 9 5 1 11 1 0 9 1 0 23 11 0 8 2 4 29 19 19 147 chain 70251 chr12 133851895 + 45380999 45381831 L1PA7 6471 - 17 848 48290 419 1 0 412 chain 7704 chr12 133851895 + 45381831 45381918 L1PA7 6471 + 5534 5621 172343 87 chain 6759 chr12 133851895 + 45390302 45390420 MER20 218 - 45 170 179255 11 3 4 67 17 23 20 chain 165508 chr12 133851895 + 45390607 45393043 L1PA8A 6298 - 34 2154 22588 294 3 1 399 0 2 76 4 3 114 0 13 66 5 6 138 59 0 136 6 20 124 0 1 342 0 3 74 305 0 127 0 5 131 1 0 5 0 3 16 0 10 11 chain 13684 chr12 133851895 + 45401824 45402069 MLT2B2 565 + 371 553 145652 16 0 1 120 8 0 9 56 0 36 chain 25262 chr12 133851895 + 45417841 45418185 THE1C 375 + 30 375 103404 17 0 9 57 0 1 84 9 0 77 0 1 73 1 0 26 chain 30398 chr12 133851895 + 45433776 45434216 MLT2A1 477 + 0 477 83686 83 0 1 84 6 3 77 17 24 91 0 2 20 4 0 8 3 37 47 chain 38379 chr12 133851895 + 45446699 45447166 L1PB1 5432 - 3157 3649 71499 197 3 28 174 0 1 8 1 0 84 chain 230018 chr12 133851895 + 45447166 45450421 L1PB1 5432 + 2284 5420 17305 31 1 2 106 0 4 459 0 3 41 0 4 157 40 7 5 0 3 52 0 2 175 4 0 222 0 1 4 1 0 171 2 0 334 1 4 248 0 1 133 0 2 17 18 14 17 3 4 114 0 1 177 1 7 192 0 13 92 1 2 9 92 0 21 1 0 12 17 12 8 2 0 11 1 4 36 2 1 18 2 1 42 1 0 16 3 0 6 16 6 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 22624 chr12 133851895 + 45463497 45463849 THE1A 353 + 0 353 117465 13 2 0 29 49 52 259 chain 17717 chr12 133851895 + 45463849 45464100 THE1C-int 1605 - 1297 1604 133655 78 0 1 39 1 55 117 5 6 11 chain 22337 chr12 133851895 + 45469091 45469374 AluSp 311 + 11 303 118749 109 7 0 12 1 0 91 0 16 42 0 1 21 chain 187753 chr12 133851895 + 45477903 45480212 L1PA8 5853 - 10 2310 20266 83 1 0 19 2 1 35 26 27 69 2 0 45 1 0 555 2 0 138 3 0 1328 chain 25757 chr12 133851895 + 45510634 45510938 AluY 311 + 0 302 101050 82 3 0 124 1 2 94 chain 2980 chr12 133851895 + 45510977 45511010 L1PB1 5432 + 5184 5217 225441 33 chain 10402 chr12 133851895 + 45511031 45511231 L1PB1 5432 + 5236 5415 158683 60 14 1 27 27 22 24 1 0 21 1 0 13 1 0 11 chain 428126 chr12 133851895 + 45526045 45531460 L1PA7 6471 + 0 6466 9349 128 0 1 38 0 16 55 5 15 21 27 28 93 14 15 59 1 0 108 25 10 60 4 5 4 1 0 84 1 13 28 4 1 23 1 39 292 9 41 396 8 21 1037 2 1 295 1 0 173 0 4 646 0 1 32 0 3 339 1 0 144 1 0 369 1 2 25 0 8 534 2 933 316 0 2 8 chain 7300 chr12 133851895 + 45536718 45536808 MER1B 344 - 213 303 175448 90 chain 113405 chr12 133851895 + 45546364 45547624 L1PA4 6152 - 1 1262 33250 293 0 1 165 1 0 442 0 1 359 chain 160848 chr12 133851895 + 45554060 45556918 L1PREC2 3366 - 334 3193 23221 22 6 4 35 22 8 11 8 5 25 3 1 15 4 1 5 2 0 12 64 44 38 1 0 54 2 0 18 6 7 7 1 0 9 1 0 130 1 5 180 1 0 250 1 0 266 0 1 107 0 5 121 20 23 10 28 15 22 0 4 109 1 0 73 1 0 80 356 11 14 1 2 24 24 22 103 3 393 123 0 18 18 11 16 89 15 12 55 7 9 112 3 0 31 4 2 11 2 1 12 1 0 23 1 0 9 5 0 20 2 0 7 chain 13359 chr12 133851895 + 45580368 45580585 MER30 238 - 8 238 146851 96 3 0 10 4 17 59 27 30 18 chain 12651 chr12 133851895 + 45594217 45594457 L1MB2 1706 + 1435 1673 149638 53 4 5 38 1 0 25 43 42 13 1 0 62 chain 507596 chr12 133851895 + 45630034 45636490 L1PA6 6164 - 17 6164 6358 225 1 4 622 0 4 266 0 2 658 0 4 108 326 0 102 0 6 632 0 1 322 0 6 6 23 12 211 0 21 37 0 3 560 28 1 43 0 1 474 0 1 587 0 1 320 0 4 72 24 7 15 1 18 286 37 32 121 0 2 81 7 8 261 chain 23938 chr12 133851895 + 45647679 45647957 AluSc 308 + 10 288 110700 278 chain 25641 chr12 133851895 + 45656204 45656505 AluSp 311 - 10 310 101537 71 1 0 229 chain 14846 chr12 133851895 + 45684985 45685152 AluSp 311 + 138 305 141787 167 chain 6808 chr12 133851895 + 45708530 45708652 MLT2C1 407 - 264 382 178890 15 1 0 72 20 17 14 chain 350353 chr12 133851895 + 45710919 45714868 L1PA5 6144 - 13 3969 11592 840 1 0 887 0 5 54 0 4 664 1 0 507 1 0 588 0 1 406 chain 6170 chr12 133851895 + 45729378 45729504 Tigger4a 237 + 110 237 183805 57 37 38 32 chain 12627 chr12 133851895 + 45739580 45739975 MSTD 398 - 5 398 149737 38 0 4 67 4 3 13 85 66 15 98 110 43 5 7 27 chain 20259 chr12 133851895 + 45757399 45757761 THE1B 368 + 0 368 126348 111 12 13 53 29 23 14 14 26 66 17 16 46 chain 543703 chr12 133851895 + 45764635 45770640 L1PA3long 6157 + 4 6152 2243 149 0 1 622 0 128 1579 0 1 735 0 1 41 0 8 2041 0 4 838 chain 20927 chr12 133851895 + 45781493 45781845 THE1D 372 + 0 360 124189 100 5 4 56 78 86 85 0 1 28 chain 514461 chr12 133851895 + 45785666 45791771 L1PA6 6164 + 2 6160 5728 235 0 2 23 1 0 248 8 10 221 0 3 6 3 0 37 0 17 62 0 10 168 0 2 407 0 2 878 0 1 62 8 6 180 0 4 562 0 5 17 1 0 19 0 1 1462 0 5 21 5 8 419 16 7 197 0 7 235 0 3 417 3 5 184 chain 40177 chr12 133851895 + 45842182 45842737 L1PB1 5432 + 2064 2623 69070 93 18 19 102 0 5 158 0 1 49 5 2 130 chain 4207 chr12 133851895 + 45866411 45866458 MER58B 340 - 9 56 204457 47 chain 2932 chr12 133851895 + 45878718 45878756 L1MD 993 + 368 404 226483 21 2 0 15 chain 15151 chr12 133851895 + 45901936 45902130 MSTD-int 1705 - 11 213 140910 90 0 7 70 0 1 34 chain 47000 chr12 133851895 + 45902130 45902656 L1PA4 6152 + 5624 6152 61210 520 0 2 6 chain 4553 chr12 133851895 + 45910900 45910960 MIR 256 - 108 169 200183 19 0 1 41 chain 40454 chr12 133851895 + 45917476 45917927 L1PA4 6152 + 5695 6146 68656 451 chain 282015 chr12 133851895 + 45917954 45921749 L1PB1 5432 + 1013 5383 14534 267 0 3 112 1 0 14 8 1 91 7 18 25 0 4 50 0 5 82 0 1 263 8 5 86 0 1 94 0 1 117 1 0 50 11 12 60 0 4 117 9 0 345 2 1 525 0 573 161 0 1 323 0 1 4 1 0 198 0 1 74 0 2 252 0 18 95 3 7 5 1 0 21 3 2 9 1 0 20 1 0 13 16 11 11 6 4 47 2 1 16 1 0 44 1 0 8 1 0 7 3 0 7 15 6 13 47 42 6 1 0 13 chain 4008 chr12 133851895 + 45928759 45928806 MER96 175 - 96 143 207267 47 chain 46105 chr12 133851895 + 45932120 45932630 L1PA4 6152 + 5642 6152 61938 510 chain 142363 chr12 133851895 + 45935333 45936978 L1PA6 6164 - 8 1711 25749 114 0 2 22 0 1 695 0 4 195 0 41 597 0 10 22 chain 6676 chr12 133851895 + 45948372 45948442 U6 107 - 37 107 179858 70 chain 2970 chr12 133851895 + 45979733 45979765 SVA_F 1814 - 1386 1418 225676 32 chain 35343 chr12 133851895 + 45994693 45995078 L1PA4 6152 - 9 394 75745 385 chain 28457 chr12 133851895 + 46019772 46020074 AluYa5 310 - 8 310 91347 302 chain 3087 chr12 133851895 + 46030179 46030298 L2a 937 - 700 818 223149 16 71 70 32 chain 22863 chr12 133851895 + 46033776 46034136 THE1B 368 - 0 368 116270 118 42 52 25 2 1 55 5 6 98 2 0 13 chain 41792 chr12 133851895 + 46060240 46060782 MER41E 591 - 47 591 66911 175 0 1 95 13 14 32 0 1 100 1 0 126 chain 31198 chr12 133851895 + 46074102 46074542 MER65C 458 - 7 458 82167 143 1 0 4 0 5 143 0 7 62 2 0 8 1 2 5 2 0 4 5 0 9 1 9 50 chain 10028 chr12 133851895 + 46082952 46083078 MER2 342 - 51 177 160434 126 chain 16946 chr12 133851895 + 46105019 46105273 Tigger3a 397 - 0 258 135740 18 8 8 40 10 13 81 0 1 97 chain 22283 chr12 133851895 + 46146762 46147093 AluSp 311 + 1 296 118986 82 3 0 123 1 2 14 50 16 58 chain 19841 chr12 133851895 + 46171717 46172000 AluSq10 312 + 11 296 127678 147 35 34 25 0 1 60 2 4 14 chain 25072 chr12 133851895 + 46194828 46195124 AluYk4 311 + 15 309 104449 287 2 0 7 chain 12575 chr12 133851895 + 46253002 46253169 Tigger3a 397 + 139 315 149942 16 1 11 16 1 0 133 chain 73964 chr12 133851895 + 46279735 46280826 THE1C-int 1605 - 6 1093 46536 198 4 5 221 2 0 6 22 20 136 7 27 94 34 2 174 57 68 136 chain 19962 chr12 133851895 + 46281745 46281992 AluY 311 + 49 297 127266 83 14 15 150 chain 23422 chr12 133851895 + 46311869 46312144 AluYk4 311 + 11 291 113529 78 0 4 84 0 1 113 chain 24432 chr12 133851895 + 46363685 46363976 AluSg7 307 - 17 307 107906 10 4 1 44 0 1 102 0 1 131 chain 8899 chr12 133851895 + 46390069 46390172 MER85 139 - 20 133 166146 20 0 10 83 chain 120965 chr12 133851895 + 46393459 46394911 SVA_A 1864 + 18 1861 30706 385 0 116 246 0 2 67 19 0 21 3 6 25 1 0 56 12 268 27 8 42 582 chain 10931 chr12 133851895 + 46405098 46405288 THE1C 375 + 158 355 156485 26 46 53 118 chain 120943 chr12 133851895 + 46411619 46413101 LTR12C 1709 + 0 1709 30709 214 5 6 40 4 5 31 0 1 71 7 6 95 0 1 249 0 118 275 9 6 106 0 4 52 1 3 26 0 1 86 0 102 211 chain 97758 chr12 133851895 + 46426916 46428174 HERVH-int 3825 + 2573 3825 37346 49 0 1 175 12 1 46 0 1 178 2 0 5 0 2 290 1 2 108 17 19 375 chain 28966 chr12 133851895 + 46429689 46430118 LTR7B 505 - 2 505 89150 49 14 13 48 4 5 22 2 1 46 0 1 38 8 10 18 3 27 12 0 38 60 0 10 105 chain 30410 chr12 133851895 + 46430361 46430814 LTR7B 505 + 0 495 83664 93 0 1 11 0 10 60 0 38 12 33 26 27 0 2 85 1 0 76 14 13 41 chain 412440 chr12 133851895 + 46430859 46435866 L1PA7 6471 + 495 6470 9734 345 0 2 173 16 40 122 0 1 32 0 4 753 12 10 334 19 19 302 1 0 9 4 0 26 1 0 67 1 0 483 0 936 234 0 7 561 1 0 367 0 1 377 1 4 432 0 1 171 1 3 5 2 0 72 1 0 82 chain 103731 chr12 133851895 + 46449473 46450606 L1PA3long 6157 + 5024 6157 35790 1133 chain 45280 chr12 133851895 + 46452375 46452888 MER9a1 513 - 0 513 62741 513 chain 5665 chr12 133851895 + 46500222 46500301 L1PA13 3608 - 3026 3102 188430 49 1 0 17 2 0 10 chain 5679 chr12 133851895 + 46510781 46510867 L1PB3 3668 + 3482 3565 188310 21 2 1 24 3 1 36 chain 39225 chr12 133851895 + 46521841 46522346 L1PA8 5853 - 3 511 70419 109 2 1 45 12 7 9 1 0 45 0 3 23 2 0 46 2 1 59 0 10 150 chain 161028 chr12 133851895 + 46532163 46534521 L1MA3 4352 - 28 2385 23193 8 1 0 27 19 17 14 2 0 28 32 32 6 4 0 78 91 73 167 1 3 419 0 1 47 28 27 260 0 1 227 0 10 151 3 4 141 1 0 63 22 24 12 0 1 109 1 9 52 1 0 38 0 1 156 0 1 75 0 1 74 chain 58716 chr12 133851895 + 46556653 46557319 L1PA5 6144 - 294 952 53572 323 8 0 335 chain 25966 chr12 133851895 + 46557319 46557622 L1PA5 6144 + 5839 6141 100149 46 1 0 256 chain 20892 chr12 133851895 + 46583393 46583695 THE1B 368 + 0 307 124307 169 1 0 21 16 24 18 1 0 6 3 2 67 chain 495822 chr12 133851895 + 46583731 46589869 L1PA6 6164 - 8 6164 7082 326 1 0 78 0 3 430 1 5 509 2 1 86 0 1 339 3 8 140 2 0 50 7 6 163 1 0 349 0 1 40 0 1 97 1 0 333 0 1 4 1 2 375 0 1 473 1 0 667 1 3 220 4 9 187 9 4 164 7 8 32 2 0 216 0 17 90 4 3 141 7 6 72 54 46 449 chain 20235 chr12 133851895 + 46604319 46604684 THE1B 368 + 0 368 126427 111 10 12 45 3 0 9 60 65 64 7 6 56 chain 24270 chr12 133851895 + 46628229 46628497 AluYk4 311 - 11 279 108852 268 chain 10345 chr12 133851895 + 46629995 46630124 MER85 139 - 0 139 158924 29 0 10 100 chain 513519 chr12 133851895 + 46639819 46646264 L1PA6 6164 + 0 6155 5830 257 0 22 7 22 0 178 1 0 1869 0 1 75 0 5 152 0 10 268 314 0 548 1 0 274 0 1 691 4 0 291 2 0 589 0 9 121 0 1 29 1 0 88 1 0 457 1 2 198 0 6 6 chain 44799 chr12 133851895 + 46646987 46647539 MER41A 554 - 0 554 63292 211 1 3 340 chain 39076 chr12 133851895 + 46651615 46652130 MER41A 554 - 0 554 70638 33 7 5 58 0 34 43 3 6 75 0 4 296 chain 507385 chr12 133851895 + 46677299 46683428 L1PA6 6164 + 0 6159 6374 262 1 2 17 6 5 108 32 33 38 1 0 322 0 17 287 0 3 762 0 1 476 4 5 250 0 3 453 0 1 150 1 2 407 0 1 753 4 0 209 0 1 743 1 5 378 6 0 6 0 6 446 0 1 6 chain 104629 chr12 133851895 + 46686176 46687675 THE1B-int 1605 - 5 1517 35588 144 16 15 431 0 5 147 12 6 102 59 62 119 17 0 22 1 2 77 15 40 34 0 2 25 5 6 227 2 1 5 0 1 39 chain 524618 chr12 133851895 + 46700827 46706945 L1PA5 6144 - 9 6130 4713 148 8 0 341 0 1 1946 0 1 28 3 0 346 0 1 733 12 1 695 5 0 676 2 1 237 5 9 609 0 10 203 0 14 121 chain 68464 chr12 133851895 + 46719209 46720059 HERVH-int 3825 - 0 855 49062 275 0 4 91 0 1 401 14 15 23 1 0 45 chain 112531 chr12 133851895 + 46733351 46734991 L1PB1 5432 - 5 1541 33525 4 1 0 5 2 0 14 1 0 12 1 0 22 1 0 23 3 1 10 5 4 5 2 0 14 8 0 16 5 0 17 1 0 43 6 4 12 2 1 52 2 0 9 2 0 3 2 0 9 1 0 7 1 0 26 1 0 11 61 10 126 1 0 308 4 5 26 1 0 173 36 0 9 0 21 534 chain 263256 chr12 133851895 + 46739609 46742624 L1PA5 6144 - 12 3038 15525 136 2 0 5 5 10 693 0 1 394 0 1 354 0 3 76 0 1 775 0 2 575 chain 22729 chr12 133851895 + 46743994 46744262 AluSg7 307 - 40 307 116931 60 1 0 207 chain 13325 chr12 133851895 + 46745306 46745577 L1PB1 5432 - 140 394 146987 11 1 0 45 1 0 15 2 1 52 2 0 9 40 34 11 30 24 52 chain 4321 chr12 133851895 + 46780182 46780228 MADE1 96 + 0 46 202951 46 chain 217652 chr12 133851895 + 46791613 46794129 L1PA5 6144 + 3617 6143 18024 813 0 1 251 1 0 612 1 8 134 1 0 35 0 4 668 chain 29212 chr12 133851895 + 46814310 46814671 L1PA3long 6157 - 0 339 87997 9 21 0 51 1 0 279 chain 527831 chr12 133851895 + 46814727 46820861 L1PA2 6032 - 8 6026 4419 200 0 1 1304 0 5 1928 0 5 501 0 2 248 0 2 1050 138 10 477 2 1 34 5 4 98 1 0 148 chain 43138 chr12 133851895 + 46869643 46870190 MER41A 554 - 0 554 65246 162 0 1 71 0 1 74 1 0 155 4 10 80 chain 13263 chr12 133851895 + 46872659 46872860 THE1C 375 - 176 375 147240 13 1 2 30 20 0 10 0 17 127 chain 47003 chr12 133851895 + 46878249 46878880 PRIMA4_LTR 623 + 0 623 61207 70 22 22 120 8 0 160 12 13 60 1 0 178 chain 34949 chr12 133851895 + 46903470 46903935 MER4A1 472 + 0 472 76265 211 22 25 11 0 5 184 1 0 36 chain 525488 chr12 133851895 + 46933726 46939837 L1PA5 6144 - 12 6141 4629 605 8 0 232 0 1 4 1 0 1608 1 0 479 2 1 31 0 1 490 10 8 68 0 4 21 0 2 259 6 5 374 1 0 787 0 3 8 0 6 99 0 2 899 1 15 117 chain 4953 chr12 133851895 + 46948015 46948070 L1PA6 6164 - 2 57 195667 55 chain 4802 chr12 133851895 + 46957044 46957114 L1MB3 1562 - 7 76 197336 29 3 2 38 chain 443426 chr12 133851895 + 46974828 46985198 L1PA8 5853 - 0 5745 8940 92 2 1 19 2 1 44 10 9 8 1 0 71 2 0 41 4 3 47 1 0 448 4631 0 56 9 7 93 3 1 249 0 8 321 1 0 227 0 1 313 0 1 4 1 0 124 1 3 998 23 19 29 10 11 119 12 17 247 0 4 184 15 7 228 6 11 155 1 0 1056 0 21 58 3 0 189 20 8 192 chain 361032 chr12 133851895 + 46975664 46980242 L1PA6 6164 - 17 6164 11341 658 0 1 47 0 1 192 0 1567 154 1 0 4 0 1 204 0 1 126 3 1 126 2 0 267 0 4 463 15 0 283 6 5 575 8 6 523 3 2 132 0 17 42 11 12 164 1 0 120 8 0 282 5 6 43 0 4 6 1 4 35 13 14 55 chain 513977 chr12 133851895 + 46989097 46995824 L1PA7 6471 - 21 6471 5778 745 1 0 5 11 13 65 2 0 207 0 6 55 1 2 182 1 0 256 1 0 514 0 1 323 0 1 59 1 3 184 9 2 319 277 5 862 16 0 21 2 1 9 0 1 166 0 1 376 6 7 497 0 1 18 0 2 353 5 4 9 0 1 54 0 2 291 9 8 252 0 7 34 4 5 109 4 0 148 7 7 257 chain 554087 chr12 133851895 + 47011280 47017426 L1PA3long 6157 + 4 6157 937 307 0 3 2077 0 2 303 0 1 3423 6 7 30 chain 4581 chr12 133851895 + 47026591 47026814 L1MC1 2226 - 28 234 199851 13 1 0 30 48 36 13 10 73 10 67 0 31 chain 5638 chr12 133851895 + 47026914 47027003 L1MC 810 - 385 477 188675 45 9 12 35 chain 27847 chr12 133851895 + 47066044 47066397 THE1A 353 + 0 353 93536 81 3 4 25 1 0 243 chain 27807 chr12 133851895 + 47075366 47075681 AluY 311 + 0 311 93672 123 8 4 184 chain 27621 chr12 133851895 + 47078055 47078409 THE1B 368 - 0 368 94293 196 7 6 109 5 20 37 chain 143298 chr12 133851895 + 47098579 47100138 L1PA2 6032 - 5 1564 25597 1119 0 1 394 1 0 45 chain 65943 chr12 133851895 + 47100138 47100851 L1PA2 6032 + 3750 4463 50035 713 chain 22252 chr12 133851895 + 47110101 47110447 THE1B 368 - 0 368 119111 52 2 0 66 37 48 4 1 0 24 1 0 116 1 16 42 chain 437000 chr12 133851895 + 47121426 47127578 HERVL-int 5654 - 13 5654 9126 35 0 4 217 6 8 148 21 4 209 24 34 77 0 3 7 4 1 235 1 2 440 0 1 560 0 1 9 0 1 139 1 5 139 0 1 117 0 3 196 8 34 54 13 8 132 5 4 557 0 8 65 0 1 144 12 11 14 0 1 138 0 1 229 543 5 213 1 3 442 0 1 4 1 0 143 7 6 290 0 1 144 15 7 90 9 1 294 chain 18699 chr12 133851895 + 47125516 47125728 L1PA4 6152 + 5931 6143 130948 212 chain 515702 chr12 133851895 + 47130775 47136925 L1PA6 6164 + 0 6162 5599 27 0 1 343 0 8 11 14 13 57 1 2 38 11 10 913 0 7 740 0 4 28 0 1 198 0 1 1125 1 0 343 7 5 367 0 1 1072 1 0 43 5 6 245 1 0 547 6 0 6 chain 95984 chr12 133851895 + 47140759 47142403 L1PREC2 3366 + 1443 2963 37826 155 2 0 87 1 0 57 155 1 14 6 7 65 0 7 7 11 31 201 0 19 145 0 2 69 0 1 169 1 2 4 1 0 33 0 6 35 0 1 96 10 13 33 10 8 35 8 6 27 1 0 25 1 0 15 103 87 14 7 5 27 3 0 11 chain 55691 chr12 133851895 + 47148926 47149541 L1PA3long 6157 + 5542 6157 55312 615 chain 117320 chr12 133851895 + 47151928 47153465 THE1B-int 1605 + 8 1593 32019 71 0 4 154 1 4 191 0 25 173 6 7 142 0 1 552 0 3 119 32 43 96 chain 18667 chr12 133851895 + 47204091 47204331 L1PA7 6471 + 6229 6467 131035 74 0 1 31 4 1 131 chain 505514 chr12 133851895 + 47242697 47248475 L1PA4 6152 + 346 6137 6493 190 0 1 167 0 1 82 0 1 373 0 3 68 0 1 2456 1 0 702 0 1 974 0 1 459 0 1 168 0 6 7 2 0 129 chain 182779 chr12 133851895 + 47248825 47251178 MER4-int 2692 - 283 2656 20703 600 1 2 297 5 0 32 0 1 19 1 0 42 0 1 151 0 15 54 9 12 263 0 1 28 6 0 326 0 10 421 7 6 38 0 1 53 chain 49314 chr12 133851895 + 47251190 47251867 LTR76 689 - 10 681 59511 19 16 13 9 3 1 235 6 5 9 2 0 165 1 3 15 0 1 155 1 0 41 chain 32032 chr12 133851895 + 47254673 47255128 MLT2A1 477 - 13 477 80814 24 7 3 8 14 0 17 1 29 179 0 1 21 0 1 12 5 2 167 chain 460177 chr12 133851895 + 47255128 47260723 HERVL-int 5654 - 0 5654 8394 126 0 2 514 4 0 228 6 22 1116 0 1 305 15 16 708 1 13 269 0 1 465 1 0 274 1 2 58 2 11 357 0 1 174 0 1 173 7 6 250 0 3 48 0 14 370 0 3 123 chain 33730 chr12 133851895 + 47260725 47261201 MLT2A1 477 - 2 477 78044 35 5 3 10 6 0 10 5 13 200 0 1 23 0 1 10 4 1 168 chain 20453 chr12 133851895 + 47261201 47261501 MER4A1 472 - 150 472 125747 67 23 44 122 1 0 56 1 0 10 5 8 15 chain 283440 chr12 133851895 + 47272155 47275605 L1PA8A 6298 + 2848 6291 14439 108 0 1 4 1 0 9 0 4 398 1 0 77 2 0 96 4 0 156 5 0 170 0 1 233 0 1 711 8 9 635 0 1 7 0 1 19 2 1 90 4 1 710 chain 101794 chr12 133851895 + 47282787 47283920 L1PA4 6152 - 0 1135 36320 113 0 1 491 0 1 529 chain 40889 chr12 133851895 + 47283920 47284371 L1PA4 6152 + 4570 5021 67593 451 chain 20233 chr12 133851895 + 47312794 47313032 L1PA7 6471 + 6231 6469 126433 238 chain 8594 chr12 133851895 + 47330918 47331202 L1MC1 2226 - 173 445 167758 7 1 0 54 29 26 29 8 9 15 2 1 19 75 66 16 4 5 25 chain 80511 chr12 133851895 + 47333232 47334100 L1PA2 6032 - 1082 1950 43274 868 chain 99647 chr12 133851895 + 47334100 47335179 L1PA2 6032 + 4949 6028 36871 1079 chain 7097 chr12 133851895 + 47340096 47340180 Tigger3b 1229 - 319 403 176783 84 chain 31905 chr12 133851895 + 47348923 47349298 L1PA7 6471 - 14 389 81001 375 chain 12195 chr12 133851895 + 47360468 47360613 L1PA5 6144 + 5993 6138 151440 145 chain 303230 chr12 133851895 + 47367577 47371379 L1PA8 5853 - 6 3759 13272 18 9 0 8 0 9 51 2 1 18 8 7 56 2 1 70 2 0 44 1 0 476 0 1 75 15 6 666 1 0 248 7 8 477 0 1 391 11 0 4 11 0 329 1 0 11 0 1 301 1 0 84 0 4 65 0 2 124 13 7 9 8 0 34 12 7 139 chain 27613 chr12 133851895 + 47372597 47372909 AluY 311 + 1 308 94314 117 5 0 190 chain 130868 chr12 133851895 + 47380797 47382444 L1PA8 5853 + 3820 5853 27892 234 0 4 61 0 387 130 0 1 97 0 3 62 7 8 203 2 0 83 0 1 470 1 0 46 2 0 69 1 0 9 2 1 11 2 0 40 3 2 18 1 0 93 chain 538420 chr12 133851895 + 47385590 47391739 L1PA4 6152 + 1 6146 3085 127 14 0 14 0 14 98 1 0 326 1 0 212 4 16 18 25 8 1555 0 1 919 0 1 557 0 1 2278 chain 10012 chr12 133851895 + 47395970 47396096 Charlie1a 1436 + 1066 1192 160531 126 chain 100894 chr12 133851895 + 47403918 47405089 L1PA5 6144 + 4968 6138 36540 409 1 0 761 chain 36422 chr12 133851895 + 47410938 47411394 LTR71A 459 + 0 459 74340 43 0 4 172 0 1 225 2 0 14 chain 38656 chr12 133851895 + 47449607 47450108 LTR15 485 + 0 484 71217 111 1 0 166 0 4 58 4 0 7 12 0 93 4 0 45 chain 542791 chr12 133851895 + 47450501 47456643 L1PA4 6152 + 0 6151 2377 460 6 0 115 2 1 835 5 10 1057 0 1 476 0 6 223 0 1 1017 0 2 1096 2 3 848 chain 22191 chr12 133851895 + 47457519 47457784 AluY 311 + 48 307 119390 78 6 0 181 chain 3762 chr12 133851895 + 47478284 47478334 L1MB7 1623 - 14 63 210916 11 1 0 38 chain 3864 chr12 133851895 + 47510930 47510983 L1MB8 1703 - 215 268 202269 53 chain 157817 chr12 133851895 + 47510985 47512762 L1PA5 6144 - 3 1786 23621 758 1 0 144 0 9 866 2 0 6 chain 7062 chr12 133851895 + 47538376 47538490 Tigger3a 397 - 74 245 177020 58 16 73 40 chain 61237 chr12 133851895 + 47555341 47556055 L1PA5 6144 + 5429 6143 52237 566 0 1 135 3 2 10 chain 4855 chr12 133851895 + 47556712 47556788 L1MB3 1562 - 1460 1537 196723 32 6 7 38 chain 56415 chr12 133851895 + 47563686 47564315 SVA_B 1603 - 0 641 54900 16 0 8 412 0 4 201 chain 23523 chr12 133851895 + 47579731 47580023 AluSg 306 + 11 303 112995 114 1 0 5 0 1 172 chain 27376 chr12 133851895 + 47584488 47584949 PrimLTR79 487 - 15 480 95037 11 1 2 12 0 1 48 0 1 12 25 26 37 1 0 36 40 39 190 9 11 39 chain 47694 chr12 133851895 + 47594770 47595331 LTR6B 557 - 0 557 60701 148 1 0 14 3 0 40 0 1 307 1 0 47 chain 5464 chr12 133851895 + 47608218 47608299 MER34C2 569 - 13 95 190374 12 6 7 63 chain 402540 chr12 133851895 + 47644172 47650953 L1PB1 5432 + 56 5410 10012 556 1 0 5 0 1 105 290 6 666 1 0 7 2 0 7 20 9 26 3 4 102 0 4 514 764 0 188 0 1 161 0 3 78 4 0 67 0 1 245 7 6 7 0 1 105 0 1 58 1 0 58 0 1 155 0 1 55 313 0 73 5 6 385 13 8 89 1 0 169 5 8 390 0 1 42 0 1 47 18 19 119 4 1 85 0 2 99 3 11 284 9 6 9 35 0 20 1 0 13 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 7 13 5 19 11 8 11 2 0 24 1 0 21 1 0 13 1 0 6 chain 64321 chr12 133851895 + 47646481 47647241 LTR17 781 - 0 781 50873 50 1 23 381 1 0 327 chain 13562 chr12 133851895 + 47684814 47685072 L1MA3 4352 - 3 238 146124 19 20 7 10 3 2 23 1 0 5 16 10 15 3 0 54 0 2 22 1 0 66 chain 38291 chr12 133851895 + 47687024 47687487 LTR2 463 + 0 463 71719 61 0 3 317 13 7 27 0 3 45 chain 11589 chr12 133851895 + 47688544 47688696 L1PA16 3655 - 101 250 153935 72 3 0 77 chain 28664 chr12 133851895 + 47690037 47690431 LTR7 482 + 0 477 90468 101 14 13 18 0 51 41 5 37 51 0 1 164 chain 87550 chr12 133851895 + 47699933 47701293 LTR12D 1347 + 0 1347 40550 158 0 1 47 18 20 39 16 16 26 95 26 56 5 8 138 2 33 70 9 0 32 0 42 23 1 0 96 19 23 11 7 14 134 23 0 9 4 0 27 1 0 34 1 0 100 0 5 159 chain 15025 chr12 133851895 + 47715442 47715629 L1MA5 2750 + 2352 2541 141252 125 1 3 61 chain 3909 chr12 133851895 + 47723397 47723467 L1MD1 2063 - 287 353 208717 23 7 0 6 0 6 20 3 0 11 chain 10156 chr12 133851895 + 47725633 47726142 L1PB1 5432 + 5144 5326 159818 12 2 0 3 2 0 9 2 0 37 306 0 15 2 1 16 1 0 44 1 0 15 2 0 6 20 10 14 chain 4780 chr12 133851895 + 47726145 47726222 L1PB1 5432 + 5327 5399 197573 5 1 0 12 2 0 26 1 0 21 1 0 8 chain 127973 chr12 133851895 + 47726984 47728524 LTR12C 1709 + 0 1709 28573 413 0 4 417 0 161 70 7 9 38 1 0 5 3 1 106 0 4 211 0 1 269 chain 15124 chr12 133851895 + 47729311 47729505 THE1B 368 + 0 192 140983 143 1 0 26 1 0 23 chain 66567 chr12 133851895 + 47736414 47737162 L1PA5 6144 + 5395 6143 49843 748 chain 5701 chr12 133851895 + 47745074 47745208 Tigger4a 237 - 78 232 188108 13 31 39 21 12 24 57 chain 30870 chr12 133851895 + 47748146 47748939 MLT2A1 477 - 0 473 82735 33 361 63 184 21 2 25 4 1 165 chain 8287 chr12 133851895 + 47748391 47748493 MLT2A2 560 + 4 106 169475 102 chain 26975 chr12 133851895 + 47753255 47753727 L1PA15 4387 - 22 479 96357 9 1 0 27 5 0 14 3 1 36 25 22 39 1 0 12 4 0 20 2 1 14 1 0 40 1 0 5 0 5 14 12 11 152 0 1 9 1 0 25 chain 4751 chr12 133851895 + 47753974 47754047 MER3 215 - 19 98 197900 23 4 10 46 chain 8300 chr12 133851895 + 47778811 47778932 MER4C 627 + 0 116 169399 75 12 7 34 chain 26037 chr12 133851895 + 47809530 47809821 AluYk4 311 - 22 311 99876 157 2 0 132 chain 55974 chr12 133851895 + 47816450 47817162 Tigger1 2417 + 1362 2087 55138 375 0 5 284 3 8 28 0 3 22 chain 541914 chr12 133851895 + 47820688 47826703 L1PA3long 6157 + 0 6152 2523 151 1 2 210 0 1 216 0 4 192 0 128 1937 0 1 2260 0 1 989 0 1 59 chain 43893 chr12 133851895 + 47837121 47837632 MER9a2 513 - 1 513 64342 498 0 1 13 chain 307259 chr12 133851895 + 47837632 47841383 HERVK9-int 4720 - 0 4684 13117 290 2 1 4 0 1 24 1 4 63 1 0 660 6 15 21 0 9 8 17 8 322 0 1 202 0 1 616 0 1 4 2 1 44 0 924 466 1 3 35 1 2 827 6 5 26 1 0 8 1 0 64 1 0 5 9 6 13 chain 44543 chr12 133851895 + 47842037 47842549 MER9a2 513 - 0 512 63536 512 chain 38376 chr12 133851895 + 47844442 47845059 L1PB1 5432 + 4754 5370 71608 232 0 1 47 19 19 51 1 2 8 3 0 20 1 0 13 28 21 52 2 1 16 2 1 43 1 0 15 1 0 5 17 7 19 3 25 18 chain 2964 chr12 133851895 + 47845060 47845105 L1PB1 5432 + 5370 5413 225783 21 1 0 13 1 0 9 chain 315596 chr12 133851895 + 47847777 47851694 L1P2 5180 - 1215 5178 12782 32 0 1 186 0 4 54 1 0 646 1 0 708 10 7 134 0 1 76 0 3 717 0 7 156 0 1 94 16 17 88 0 1 74 0 25 139 9 7 102 9 9 161 1 0 268 1 0 79 14 25 141 chain 15508 chr12 133851895 + 47851729 47851933 THE1B 368 - 161 368 139865 6 0 3 17 0 1 4 1 0 7 1 0 77 0 1 91 chain 249202 chr12 133851895 + 47857577 47860620 L1PA7 6471 - 10 3059 16298 979 1 0 201 0 1 88 0 1 122 9 10 116 0 1 50 0 8 6 9 0 980 0 8 10 0 1 43 8 0 283 0 4 8 2 1 128 chain 28025 chr12 133851895 + 47864145 47864522 THE1C 375 + 0 375 92912 135 0 4 37 0 1 11 8 6 97 4 0 58 1 0 26 chain 23019 chr12 133851895 + 47873013 47873272 L1PA2 6032 + 5766 6025 115531 103 0 1 17 1 0 138 chain 507967 chr12 133851895 + 47891212 47897470 L1PA7 6471 + 158 6453 6325 252 1 3 59 0 2 204 1 4 18 8 6 87 0 6 543 0 2 5 1 0 12 3 2 712 0 1 125 7 6 90 0 1 340 1 2 125 2 0 212 0 11 112 11 15 28 1 0 4 0 1 333 20 19 109 1 3 461 0 1 12 0 5 1312 0 1 143 0 1 73 1 0 392 0 7 362 4 0 71 chain 47009 chr12 133851895 + 47901977 47902514 L1PA4 6152 + 5611 6140 61199 154 9 0 324 0 1 50 chain 187549 chr12 133851895 + 47904793 47906986 L1PA5 6144 + 3952 6144 20287 676 1 0 504 0 1 27 2 1 633 3 0 192 1 4 154 chain 73112 chr12 133851895 + 47910176 47911174 THE1C-int 1605 - 0 997 46974 421 0 1 61 38 39 146 0 2 10 0 1 172 6 0 20 29 29 95 chain 4892 chr12 133851895 + 47914071 47914261 L1MA4A 3247 - 68 236 196356 31 3 8 9 37 0 25 2 1 10 46 57 27 chain 451106 chr12 133851895 + 47914357 47920200 L1PA8 5853 - 0 5803 8734 29 1 10 52 3 2 19 2 1 34 29 27 46 0 6 19 7 8 38 1 0 283 6 12 253 6 4 403 0 1 83 0 1 306 0 1 156 0 8 1140 9 7 22 1 0 11 5 4 418 3 12 31 21 0 228 8 23 98 1 0 31 36 0 163 4 0 110 0 1 199 0 4 19 1 0 5 2 5 127 0 1 229 1 5 160 0 4 208 0 3 133 0 6 9 13 14 313 13 2 198 52 16 9 1 0 12 2 0 21 chain 7002 chr12 133851895 + 47943528 47943646 L1MB5 1630 + 811 954 177448 79 24 49 15 chain 4589 chr12 133851895 + 47953371 47953422 MADE1 96 + 45 96 199759 51 chain 6124 chr12 133851895 + 47974947 47975044 MER85 139 + 32 139 184232 40 17 27 40 chain 6516 chr12 133851895 + 47993204 47993283 MSTA 426 - 12 95 181112 18 0 4 61 chain 4159 chr12 133851895 + 47993398 47993471 L1MC4 1079 - 976 1048 205104 22 13 12 38 chain 461949 chr12 133851895 + 48018266 48024080 L1PA8 5853 + 50 5853 8332 21 3 1 11 1 0 9 52 16 193 19 7 143 0 4 324 0 3 501 0 20 373 1 0 29 0 1 148 1 7 45 0 4 47 2 0 68 0 1 60 2 0 185 0 4 262 4 0 218 0 3 62 5 7 79 0 1 7 12 7 13 3 7 137 0 3 127 6 7 6 1 0 172 0 1 834 5 9 750 0 4 15 12 7 71 2 3 434 1 0 43 1 0 44 2 0 70 2 1 14 2 0 5 5 7 35 2 1 19 2 1 92 chain 347820 chr12 133851895 + 48031890 48036618 L1PB1 5432 + 760 5413 11671 629 0 1 4 42 26 124 0 4 50 0 5 290 0 7 440 13 7 147 6 0 307 1 11 30 1 0 37 0 1 65 0 10 418 1 2 240 1 0 5 0 1 76 22 1 37 5 0 79 1 0 54 52 17 77 6 5 114 0 16 293 4 1 237 3 0 211 8 9 147 1 2 4 1 0 102 5 2 8 0 1 24 1 0 5 21 16 10 3 1 50 2 1 12 6 5 29 2 0 14 1 0 15 5 2 13 7 0 16 8 5 14 2 0 23 2 1 21 1 0 13 1 0 9 chain 2907 chr12 133851895 + 48035034 48035066 L1PB1 5432 - 1481 1513 226911 32 chain 444289 chr12 133851895 + 48067935 48073187 L1PA6 6164 + 0 6162 8922 88 0 900 198 0 1 120 0 1 152 0 1 739 0 1 11 0 2 111 0 1 723 1 0 115 6 8 13 2 0 4 0 1 253 0 2 58 0 4 189 1 0 518 2 3 184 23 0 39 0 19 134 1 0 56 1 0 604 0 1 649 0 1 98 2 0 11 1 4 145 chain 24666 chr12 133851895 + 48246951 48247249 AluY 311 + 8 302 106632 268 10 6 20 chain 5042 chr12 133851895 + 48267452 48267512 THE1D 372 + 312 372 194715 60 chain 25615 chr12 133851895 + 48281760 48282114 THE1A 353 - 0 353 101649 142 17 16 85 1 0 82 1 2 26 chain 2893 chr12 133851895 + 48333464 48333495 MER53 195 + 137 168 227132 31 chain 43271 chr12 133851895 + 48352493 48353328 MER41A 554 + 0 554 65091 331 7 0 65 0 1 38 278 3 116 chain 9295 chr12 133851895 + 48353328 48353440 MSTA-int 1630 + 1505 1617 164084 112 chain 9721 chr12 133851895 + 48354863 48354972 MER4B 649 - 514 623 161981 109 chain 14217 chr12 133851895 + 48471368 48471536 L1PA5 6144 - 2 169 143824 12 1 0 155 chain 3438 chr12 133851895 + 48473976 48474012 MER3 215 - 5 41 216431 36 chain 227627 chr12 133851895 + 48505393 48508784 HERVH-int 3825 - 0 3030 17442 463 11 13 112 14 16 183 0 4 19 1 0 213 11 0 707 0 5 223 3 2 160 0 11 221 1 0 3 322 0 5 10 0 34 9 0 156 60 0 10 1 31 150 13 14 41 24 23 211 chain 25710 chr12 133851895 + 48509040 48509459 LTR7B 505 - 10 505 101249 41 14 13 52 0 1 26 2 1 50 39 41 18 3 27 12 0 38 57 0 10 14 0 3 91 chain 9806 chr12 133851895 + 48509460 48509584 MER4E 760 + 634 757 161567 56 1 0 67 chain 23171 chr12 133851895 + 48590491 48590781 AluSp 311 + 0 282 114808 49 12 4 229 chain 104446 chr12 133851895 + 48600091 48601491 L1PA16 3655 + 1487 2883 35627 35 0 1 175 0 1 24 0 2 70 1 0 58 4 5 13 0 1 72 0 1 52 2 0 242 1 0 21 8 0 10 6 8 388 26 25 192 chain 140847 chr12 133851895 + 48602720 48604281 L1PA3long 6157 + 4594 6156 26018 712 0 1 60 1 0 639 4 5 145 chain 65165 chr12 133851895 + 48620363 48621191 L1PB1 5432 - 2684 3518 50414 159 0 3 428 0 1 22 0 1 70 1 2 148 chain 191480 chr12 133851895 + 48621191 48624067 L1PB1 5432 + 2749 5423 19914 84 3 1 57 0 3 112 0 1 503 0 4 204 18 19 130 1 0 95 0 1 89 0 1 411 24 30 62 5 6 65 28 47 24 0 2 187 0 2 179 242 35 11 3 0 24 1 0 8 1 0 12 5 1 9 2 0 52 20 18 43 39 27 19 7 5 14 2 0 24 1 0 21 1 0 12 2 1 14 1 0 5 chain 4375 chr12 133851895 + 48625779 48625835 MER5B 177 + 115 170 202254 17 1 0 38 chain 4840 chr12 133851895 + 48633825 48633882 L1PA8 5853 + 5796 5853 196878 57 chain 49630 chr12 133851895 + 48635283 48638799 Tigger1 2417 + 4 2050 59295 13 0 1 31 0 4 130 2753 1281 361 31 27 76 4 5 117 chain 18883 chr12 133851895 + 48637038 48637259 AluY 311 + 84 306 130413 47 1 2 173 chain 15154 chr12 133851895 + 48646477 48646825 L1PB1 5432 - 10 326 140902 11 1 0 7 6 5 8 1 0 21 1 0 24 2 0 15 8 5 29 14 1 12 7 6 42 1 0 15 2 1 11 6 7 5 0 1 28 2 0 9 7 3 10 1 0 8 1 0 21 1 0 11 chain 71774 chr12 133851895 + 48646928 48648054 L1MA2 4263 + 2968 4111 47577 53 3 2 20 1 12 46 6 13 131 0 2 5 2 0 61 0 1 91 0 18 78 19 20 57 13 9 20 0 6 4 14 0 45 1 0 126 8 15 5 3 0 49 1 0 99 2 1 10 1 0 91 20 13 34 1 0 6 chain 30222 chr12 133851895 + 48649309 48649627 AluYb8 318 - 0 318 84127 318 chain 113048 chr12 133851895 + 48670929 48672168 L1PA3long 6157 - 1 1240 33362 54 1 0 1169 0 1 15 chain 27461 chr12 133851895 + 48676137 48676548 MER1A 529 + 100 495 94776 190 1 0 52 4 0 44 28 6 32 0 7 25 6 10 29 chain 43835 chr12 133851895 + 48706340 48706875 L1PA7 6471 - 1 538 64401 144 13 13 176 0 1 30 0 1 172 chain 29572 chr12 133851895 + 48710703 48711012 AluYa5 310 - 1 310 86318 309 chain 26556 chr12 133851895 + 48713293 48713595 L1PA2 6032 - 9 310 97819 5 2 0 15 0 1 280 chain 538365 chr12 133851895 + 48713976 48719958 L1PA3long 6157 - 147 6134 3091 2521 0 1 311 1 2 327 1 0 1308 0 1 346 1 4 19 0 3 635 4 0 490 0 1 18 chain 128181 chr12 133851895 + 48725480 48727540 SVA_F 1814 - 0 1479 28528 607 538 0 80 49 0 161 3 18 56 1 0 4 0 2 11 50 0 56 0 40 444 chain 13749 chr12 133851895 + 48726108 48726452 SVA_F 1814 - 627 900 85005 10 4 0 39 79 0 15 1 0 118 6 4 39 0 15 33 chain 4808 chr12 133851895 + 48726161 48726239 SVA_F 1814 - 725 803 124287 78 chain 5330 chr12 133851895 + 48726540 48726625 SVA_F 1814 - 698 783 117402 85 chain 1439 chr12 133851895 + 48726705 48726741 SVA_F 1814 - 927 964 85005 5 0 2 25 1 0 5 chain 3047 chr12 133851895 + 48726990 48727022 SVA_F 1814 - 889 921 218359 32 chain 53313 chr12 133851895 + 48747463 48748206 L1MA2 4263 - 149 872 56823 9 1 0 30 1 0 17 7 0 92 1 0 9 2 1 93 1 0 57 7 4 140 1 0 76 9 5 190 chain 21838 chr12 133851895 + 48767344 48767608 L1PA4 6152 + 5868 6151 120862 85 0 12 36 2 9 141 chain 212975 chr12 133851895 + 48775029 48777585 L1P2 5180 - 1159 3723 18298 7 0 1 725 0 2 275 1 0 226 0 4 171 0 4 274 7 5 870 chain 11618 chr12 133851895 + 48781187 48781320 LTR32 486 + 353 486 153816 133 chain 86915 chr12 133851895 + 48786560 48787681 L1PA10 4194 - 33 1165 40819 14 1 0 31 3 0 189 0 11 181 6 8 77 0 1 455 0 1 52 0 1 6 1 3 7 3 0 95 chain 62972 chr12 133851895 + 48789858 48790590 L1PA5 6144 + 5413 6144 51459 392 1 2 325 3 1 11 chain 407060 chr12 133851895 + 48792042 48796944 L1PA6 6164 - 3 4923 9875 8 0 2 139 18 19 504 0 1 165 0 7 519 0 1 68 0 1 274 0 1 176 8 0 56 0 1 701 0 1 300 8 4 424 7 1 395 0 1 4 1 0 63 2 1 71 0 13 28 0 4 452 0 1 113 6 8 70 0 1 322 chain 550504 chr12 133851895 + 48796969 48803100 L1PA3long 6157 - 10 6153 1374 45 0 4 797 0 1 794 0 1 60 0 1 1056 1 2 1780 0 1 1064 0 1 42 0 1 453 0 1 39 chain 82436 chr12 133851895 + 48820056 48821343 L1PREC2 3366 - 360 1617 42464 35 165 130 31 10 9 49 2 0 5 1 2 148 0 1 109 1 4 261 5 7 320 4 5 141 chain 284204 chr12 133851895 + 48821343 48825057 L1PB1 5432 + 1700 5413 14405 146 1 5 565 0 3 73 2 0 348 1 0 43 0 2 167 1 2 201 1 0 477 0 4 6 0 1 208 1 2 261 0 1 48 0 10 332 0 4 19 3 0 84 1 0 8 0 5 87 4 3 69 10 11 208 1 2 9 3 0 24 0 3 5 5 0 12 18 12 49 1 0 13 6 5 44 1 0 14 3 0 12 5 0 20 16 13 6 2 0 24 1 0 21 1 0 13 1 0 9 chain 536772 chr12 133851895 + 48827562 48833690 L1PA4 6152 + 3 6151 3342 1068 0 1 881 1 4 822 0 4 475 0 5 573 1 0 829 1 0 461 1 0 4 0 1 170 1 0 25 1 10 481 1 2 332 chain 56295 chr12 133851895 + 48842547 48843336 MER4E1 777 - 10 777 54965 113 1 2 54 5 4 28 36 28 257 15 0 168 1 3 87 1 0 23 chain 22768 chr12 133851895 + 48843602 48843903 THE1A 353 + 13 353 116739 97 0 33 59 1 0 24 6 13 114 chain 194172 chr12 133851895 + 48843991 48846770 L1PA11 4918 + 1893 4629 19658 63 0 1 4 1 0 4 24 23 207 4 3 62 3 7 10 0 4 52 0 1 375 3 4 6 7 0 187 0 1 32 5 4 6 0 1 35 8 1 106 2 0 121 0 1 185 1 2 23 6 8 86 6 10 680 19 1 127 4 0 59 3 2 10 2 0 68 2 4 9 1 0 11 46 43 12 1 0 13 40 28 11 9 5 18 chain 104571 chr12 133851895 + 48857018 48858476 L1PA13 3608 + 2031 3482 35605 279 3 9 36 5 6 41 28 16 60 1 0 177 3 1 157 0 5 20 0 1 168 1 5 120 1 0 28 1 0 114 3 4 56 1 0 18 0 1 38 9 6 47 14 10 14 1 0 14 chain 56440 chr12 133851895 + 48863702 48864569 L1PA16 3655 - 125 1020 54883 7 0 4 159 5 4 68 2 0 58 20 21 5 1 0 197 0 13 18 0 7 60 3 6 16 0 4 89 6 11 44 10 6 56 17 16 26 chain 391738 chr12 133851895 + 48868044 48872500 L1PA4 6152 + 6 4458 10400 309 5 6 139 6 0 120 1 0 460 0 2 194 1 0 639 0 1 2582 chain 26873 chr12 133851895 + 48872500 48872797 L1PA4 6152 + 5342 5639 95780 297 chain 45449 chr12 133851895 + 48872797 48873305 L1PA4 6152 + 5643 6151 62547 508 chain 24295 chr12 133851895 + 48891362 48891647 AluSp 311 + 13 297 108675 164 1 0 120 chain 159885 chr12 133851895 + 48893514 48895337 SVA_D 2077 - 4 2077 23354 62 0 2 527 0 98 323 0 1 6 24 166 637 3 4 188 0 6 53 chain 45592 chr12 133851895 + 48900600 48901204 LTR14B 630 + 9 630 62416 47 1 0 269 10 28 171 1 2 22 1 0 82 chain 113141 chr12 133851895 + 48901407 48903079 HERVK14-int 1672 + 1 1665 33336 29 1 0 11 1 0 49 1 0 8 0 1 188 19 18 34 2 0 37 0 4 17 5 6 4 1 0 160 1 0 34 13 12 206 1 0 90 3 12 61 1 0 79 1 0 3 1 0 8 2 0 32 2 1 104 1 0 98 2 1 64 0 13 12 13 0 19 1 0 63 11 10 19 2 0 11 1 0 12 22 23 105 1 0 6 chain 8223 chr12 133851895 + 48907530 48907679 L1MA3 4352 - 38 184 169822 21 13 11 24 8 6 50 0 2 21 1 0 11 chain 71368 chr12 133851895 + 48912762 48913595 L1PA6 6164 - 3 830 47758 102 6 0 725 chain 135770 chr12 133851895 + 48913595 48915195 SVA_C 1631 - 6 1630 26885 621 1 2 52 2 1 91 1 0 27 0 40 706 5 0 21 25 0 25 6 21 17 chain 31791 chr12 133851895 + 48929318 48929880 L1PA15 4387 + 3812 4355 81186 62 0 1 7 11 10 41 1 0 163 10 9 26 3 2 51 2 1 17 4 0 11 5 4 38 30 27 32 3 1 11 8 3 26 chain 7230 chr12 133851895 + 48933935 48934022 LTR69 548 + 0 87 175889 87 chain 507513 chr12 133851895 + 48940673 48948109 L1PA4 6152 - 9 6142 6364 104 0 1 139 1 0 4 1 2 1614 0 1 315 0 2 38 1 2 616 1 2 223 0 1 98 0 1 172 0 1 486 2 1 303 17 1 175 1307 0 158 0 1 224 0 1 270 20 11 414 6 7 297 10 14 303 6 20 111 chain 108113 chr12 133851895 + 48944995 48946287 SVA_C 1631 + 12 1631 34684 8 0 1 36 13 7 447 13 14 194 0 336 263 1 0 296 4 0 17 chain 41508 chr12 133851895 + 48950281 48950909 LTR9B 643 - 20 638 67271 20 12 10 99 0 1 53 20 21 86 1 0 123 10 9 15 0 1 42 29 0 21 0 20 97 chain 116960 chr12 133851895 + 48968292 48969587 L1PA3long 6157 - 2675 3969 32076 273 1 0 25 0 1 493 1 0 502 chain 245072 chr12 133851895 + 48969587 48972263 L1PA3long 6157 + 3481 6157 16508 1190 1 0 635 0 1 850 chain 11085 chr12 133851895 + 48986401 48986738 MER21B 843 + 0 315 155866 12 10 0 2 4 0 15 50 24 22 18 15 13 0 64 90 54 19 8 9 0 16 0 1 14 chain 59122 chr12 133851895 + 48986768 48987523 MER4E 760 + 0 760 53315 333 6 12 24 0 2 8 0 4 63 4 8 79 13 1 26 10 11 189 chain 29261 chr12 133851895 + 48997766 48998223 MLT2A1 477 + 0 463 87737 60 9 7 101 5 2 9 0 1 15 1 0 9 0 1 180 45 55 23 chain 44983 chr12 133851895 + 48999403 49000000 MSTA-int 1630 - 0 591 63074 19 0 1 87 7 0 7 1 0 295 0 1 16 1 0 4 14 15 146 chain 8503 chr12 133851895 + 49001786 49001954 L1PA16 3655 - 36 180 168273 16 5 0 7 7 0 4 12 0 15 17 17 85 chain 333718 chr12 133851895 + 49003424 49008885 L1PA11 4918 - 411 4901 12060 19 5 4 12 9 7 60 1 0 11 2 1 62 29 8 6 0 4 89 0 5 141 1 0 590 0 1 283 8 7 74 6 11 51 9 8 41 23 28 6 1 0 431 25 0 19 1 0 111 576 0 140 0 12 18 1 0 56 13 6 368 1 2 91 4 0 425 0 2 183 1 0 72 0 1 297 1 0 276 45 2 94 2 3 23 0 1 64 308 0 62 9 6 33 1 0 43 9 7 17 2 1 30 1 0 4 2 0 36 2 0 25 chain 47826 chr12 133851895 + 49016472 49017165 LTR12 884 - 0 884 60606 128 0 8 20 0 103 248 2 0 33 24 8 78 9 8 45 11 0 24 1 0 8 6 117 56 chain 112744 chr12 133851895 + 49035166 49036650 SVA_A 1864 + 20 1487 33462 557 0 2 110 3 0 8 40 0 28 3 0 38 2 1 122 1 0 56 8 42 36 4 1 77 3 1 36 2 0 9 41 0 26 3 0 73 38 84 160 chain 1731 chr12 133851895 + 49035844 49035870 SVA_A 1864 + 547 573 145783 26 chain 4522 chr12 133851895 + 49039892 49039947 U6 107 - 51 106 200529 55 chain 23319 chr12 133851895 + 49058360 49058661 AluSg7 307 - 5 304 114103 159 13 11 129 chain 17807 chr12 133851895 + 49062273 49062489 AluSp 311 + 73 289 133383 216 chain 16143 chr12 133851895 + 49096823 49098806 MER1A 529 + 242 521 137924 83 1699 0 128 40 37 19 1 0 8 1 0 4 chain 28578 chr12 133851895 + 49112838 49113214 THE1B 368 - 0 368 90831 78 3 0 117 4 1 159 2 0 13 chain 113968 chr12 133851895 + 49113225 49114766 THE1B-int 1605 - 11 1605 33103 35 5 4 87 0 1 659 0 1 95 34 32 4 0 1 95 25 46 32 0 3 43 1 26 121 0 2 290 0 2 15 chain 7716 chr12 133851895 + 49114766 49114866 THE1B 368 - 0 97 172824 78 3 0 19 chain 14142 chr12 133851895 + 49114866 49115103 THE1B 368 - 120 355 144067 80 3 0 36 39 40 79 chain 138461 chr12 133851895 + 49117809 49119363 SVA_D 2077 + 0 2077 26398 19 5 0 541 0 40 125 0 3 34 3 0 146 1 0 12 1 490 667 chain 3476 chr12 133851895 + 49134776 49134820 L1MC4 1079 - 198 242 215710 44 chain 12665 chr12 133851895 + 49139169 49139368 AluSz 310 + 64 268 149588 69 2 0 17 13 14 72 8 14 18 chain 26076 chr12 133851895 + 49184909 49185216 AluYb8 318 + 0 305 99722 123 3 1 181 chain 25999 chr12 133851895 + 49186746 49187049 AluSp 311 + 0 304 100020 91 0 3 25 2 0 185 chain 152004 chr12 133851895 + 49235221 49237091 SVA_D 2077 + 14 2073 24334 11 1 0 3 1 0 409 0 156 131 0 3 31 6 3 147 9 4 26 0 38 28 0 51 15 1 2 111 50 0 74 14 42 8 0 1 76 1 0 4 24 0 13 4 0 672 chain 3886 chr12 133851895 + 49236151 49236201 SVA_D 2077 + 1310 1359 115589 17 19 18 14 chain 22963 chr12 133851895 + 49238954 49239259 AluY 311 + 0 300 115789 64 0 3 106 4 0 87 6 2 38 chain 23347 chr12 133851895 + 49247941 49248210 AluSc5 308 - 24 293 113940 269 chain 25337 chr12 133851895 + 49260409 49260695 AluSp 311 - 25 311 103039 286 chain 4813 chr12 133851895 + 49274614 49274672 MER41D 557 + 19 77 197202 58 chain 9792 chr12 133851895 + 49281803 49281921 MER44B 551 - 133 251 161643 118 chain 5368 chr12 133851895 + 49285934 49286000 U6 107 - 27 96 191331 30 0 3 36 chain 16995 chr12 133851895 + 49289638 49289840 AluSp 311 + 83 290 135609 26 0 5 176 chain 25381 chr12 133851895 + 49289881 49290184 AluSq2 311 + 8 311 102777 303 chain 20292 chr12 133851895 + 49295513 49295756 AluSp 311 - 12 254 126247 17 4 3 222 chain 2831 chr12 133851895 + 49296790 49297061 L1MB7 1623 - 145 371 228205 24 210 169 17 2 0 5 2 0 11 chain 141343 chr12 133851895 + 49308895 49310439 SVA_D 2077 - 0 2077 25929 573 0 315 115 0 223 826 5 0 25 chain 24639 chr12 133851895 + 49353562 49353880 AluY 311 + 0 304 106791 60 7 0 72 0 1 163 8 0 8 chain 7374 chr12 133851895 + 49369336 49369428 U6 107 + 11 106 174944 33 0 3 59 chain 3556 chr12 133851895 + 49461738 49461824 L1MA4 2864 - 55 140 214411 28 20 18 22 4 5 12 chain 20862 chr12 133851895 + 49472606 49472872 AluSc5 308 + 6 274 124421 103 1 0 22 2 1 118 0 4 20 chain 25327 chr12 133851895 + 49476163 49476457 AluSp 311 - 7 301 103084 294 chain 8806 chr12 133851895 + 49478186 49478290 MLT1B 390 - 5 109 166617 104 chain 41783 chr12 133851895 + 49506547 49507031 MER9a2 513 - 0 500 66921 57 0 4 85 0 11 250 0 1 92 chain 92379 chr12 133851895 + 49509423 49510456 LTR5A 1029 + 0 1029 38849 55 3 0 92 1 0 882 chain 5638 chr12 133851895 + 49526638 49526730 HY4 93 - 0 93 188674 26 12 13 54 chain 24095 chr12 133851895 + 49540868 49541149 AluSp 311 - 8 289 109763 281 chain 11795 chr12 133851895 + 49543291 49543431 AluSp 311 - 15 156 153064 99 0 1 41 chain 34722 chr12 133851895 + 49543499 49544941 Tigger1 2417 + 54 975 76590 10 3 0 127 969 454 17 3 0 313 chain 3572 chr12 133851895 + 49550509 49550552 LTR62 707 + 12 55 214104 43 chain 14027 chr12 133851895 + 49552663 49552834 MER50 708 - 30 201 144474 171 chain 10925 chr12 133851895 + 49554257 49554394 LTR62 707 + 564 702 156509 12 0 1 125 chain 11494 chr12 133851895 + 49554395 49554568 MER51B 395 + 0 223 154319 63 7 1 60 8 64 35 chain 24294 chr12 133851895 + 49608084 49608374 AluSg7 307 - 6 296 108684 169 1 0 14 1 0 56 0 2 49 chain 27189 chr12 133851895 + 49642364 49642672 AluY 311 + 0 304 95631 133 4 0 171 chain 11476 chr12 133851895 + 49652861 49653017 Tigger3b 1229 + 833 1011 154400 40 1 11 108 0 12 7 chain 25102 chr12 133851895 + 49659926 49660226 AluY 311 + 0 297 104276 123 7 3 154 0 1 16 chain 29227 chr12 133851895 + 49672364 49672673 AluYa5 310 - 1 310 87924 309 chain 23172 chr12 133851895 + 49675580 49675868 AluSp 311 - 15 302 114801 176 1 0 111 chain 62630 chr12 133851895 + 49676769 49677435 SVA_D 2077 - 0 666 51618 666 chain 149817 chr12 133851895 + 49703793 49705463 L1PA4 6152 - 12 1686 24644 832 0 4 838 chain 3813 chr12 133851895 + 49706281 49706327 L1MC4 1079 + 72 118 210185 46 chain 10579 chr12 133851895 + 49809482 49809633 MER58A 224 - 0 186 157920 74 10 45 67 chain 160580 chr12 133851895 + 49829428 49831664 SVA_D 2077 - 0 2075 23258 18 2 0 81 0 4 492 0 98 303 0 68 66 415 49 137 3 0 33 0 3 75 0 40 599 3 0 9 chain 32147 chr12 133851895 + 49830405 49830789 SVA_F 1814 - 523 969 80614 17 1 0 60 0 49 203 0 15 59 0 1 22 1 0 10 1 0 10 chain 29246 chr12 133851895 + 49852734 49853515 LTR71A 459 + 0 457 87820 101 0 3 74 23 24 123 13 14 38 336 6 53 4 5 16 chain 10026 chr12 133851895 + 49889355 49889486 MER85 139 + 9 139 160445 73 7 6 51 chain 24444 chr12 133851895 + 49923661 49923958 AluY 311 + 0 293 107832 45 0 1 32 5 0 215 chain 17167 chr12 133851895 + 49966042 49966369 MER1B 344 - 5 344 135117 54 19 23 151 7 0 26 56 71 14 chain 21737 chr12 133851895 + 49967947 49968312 THE1D 372 - 3 372 121251 29 1 0 13 0 1 90 14 15 13 4 6 17 2 0 10 8 16 18 4 8 78 9 0 55 chain 7135 chr12 133851895 + 49990174 49990260 MER66D 528 + 348 433 176515 9 1 0 76 chain 17336 chr12 133851895 + 50004005 50004290 L1PA15-16 3068 + 222 504 134692 4 1 0 23 2 0 23 1 0 35 7 13 33 2 0 111 19 16 24 chain 4887 chr12 133851895 + 50008522 50008582 L1PB1 5432 + 5237 5296 196397 43 1 0 16 chain 37058 chr12 133851895 + 50107819 50108306 L1PA7 6471 + 5986 6466 73443 36 19 12 103 0 1 259 13 15 47 3 0 7 chain 21771 chr12 133851895 + 50108852 50109134 AluJb 308 + 8 288 121125 117 3 1 162 chain 22777 chr12 133851895 + 50115186 50115535 THE1B 368 - 0 368 116695 54 3 7 135 8 7 83 22 18 8 0 9 27 0 11 9 chain 10413 chr12 133851895 + 50115625 50115813 L1PA16 3655 - 63 252 158630 14 3 0 30 40 44 101 chain 41576 chr12 133851895 + 50118311 50119112 L1PB1 5432 + 4649 5423 67192 57 1 2 50 19 6 47 25 27 4 1 0 10 21 32 93 1 6 115 16 16 24 1 0 4 1 0 14 2 0 3 2 0 9 2 0 52 3 1 9 7 6 45 2 0 21 20 10 10 2 0 10 1 0 12 2 0 26 1 0 21 1 0 13 1 0 14 1 0 5 chain 4922 chr12 133851895 + 50121622 50121751 L1MB7 1623 + 1307 1429 196015 16 47 42 5 1 0 53 1 0 6 chain 23841 chr12 133851895 + 50122604 50122882 AluSc5 308 - 19 297 111243 278 chain 37550 chr12 133851895 + 50127772 50128234 LTR2 463 + 0 463 72755 362 12 13 88 chain 309688 chr12 133851895 + 50129778 50133504 Harlequin-int 5206 + 133 3871 13016 9 9 0 158 2 0 63 12 11 110 8 0 63 0 2 366 0 3 93 1 0 198 0 7 659 6 5 152 4 21 209 1 0 186 0 4 35 0 6 946 4 1 122 0 2 5 8 5 5 0 1 217 1 0 74 chain 33952 chr12 133851895 + 50133910 50134344 LTR2 463 + 0 463 77691 223 1 6 16 0 24 91 14 15 7 1 0 81 chain 9815 chr12 133851895 + 50139578 50139714 MER47A 366 + 146 276 161524 95 5 0 12 1 0 23 chain 3006 chr12 133851895 + 50171469 50171503 MIR 256 + 196 230 224919 34 chain 8929 chr12 133851895 + 50173787 50173955 MLT1C 463 - 289 457 165987 4 1 0 23 9 8 12 0 1 78 24 25 17 chain 3365 chr12 133851895 + 50204815 50204866 MER3 215 + 93 139 217760 38 5 0 8 chain 5928 chr12 133851895 + 50211191 50211262 tRNA-Gln-CAA_ 72 - 0 72 185912 6 0 1 65 chain 12523 chr12 133851895 + 50211947 50212159 L1MA7 2200 + 1031 1258 150144 31 21 16 59 1 17 44 8 12 48 chain 29233 chr12 133851895 + 50231059 50231369 AluYa5 310 - 0 310 87893 310 chain 26106 chr12 133851895 + 50239202 50239487 AluYf4 310 + 10 296 99597 99 0 1 186 chain 82084 chr12 133851895 + 50250261 50251319 L1MA3 4352 - 533 1591 42729 72 0 1 294 0 1 48 0 1 15 1 0 65 14 12 302 0 1 170 3 0 50 0 1 4 0 1 20 chain 157040 chr12 133851895 + 50253991 50255763 SVA_D 2077 + 10 2059 23717 166 0 4 716 1 0 6 5 48 10 0 1 47 0 51 33 1 2 9 2 1 17 0 127 96 0 49 50 0 2 239 0 1 374 chain 6614 chr12 133851895 + 50318349 50318514 MER53 195 + 13 189 180347 50 67 78 48 chain 44914 chr12 133851895 + 50375182 50376055 PABL_A 660 + 0 629 63160 139 303 0 77 0 45 62 0 5 105 0 8 182 0 1 5 chain 24295 chr12 133851895 + 50380188 50380548 THE1C 375 - 5 375 108677 20 1 0 119 4 7 18 0 3 13 1 0 8 0 1 28 7 11 24 14 11 91 0 4 12 chain 22616 chr12 133851895 + 50391356 50391649 AluSp 311 - 15 300 117505 7 3 0 52 11 7 102 2 1 116 chain 25304 chr12 133851895 + 50396530 50396827 AluY 311 + 8 303 103203 115 2 0 180 chain 8423 chr12 133851895 + 50417543 50417662 L1PB4 2604 + 2143 2269 168717 97 6 13 16 chain 3429 chr12 133851895 + 50502582 50502626 MIRb 242 - 108 152 216582 44 chain 5294 chr12 133851895 + 50538138 50538205 MER5A1 166 + 98 165 192080 67 chain 26090 chr12 133851895 + 50540361 50540651 AluYc 301 + 1 293 99664 119 0 2 171 chain 5134 chr12 133851895 + 50545100 50545168 MADE1 96 + 0 93 193739 22 1 26 45 chain 21708 chr12 133851895 + 50547872 50548128 AluSc5 308 + 17 278 121360 210 0 5 46 chain 32498 chr12 133851895 + 50550682 50551118 MLT2A1 477 + 0 477 80026 169 8 15 201 4 0 10 2 40 42 chain 25029 chr12 133851895 + 50562445 50562740 AluY 311 + 0 301 104641 12 0 3 107 0 1 9 0 1 142 0 1 25 chain 28595 chr12 133851895 + 50564561 50564869 AluYa5 310 - 1 309 90760 308 chain 15088 chr12 133851895 + 50609576 50609836 AluSz6 309 + 26 295 141065 115 17 17 16 32 1 9 0 38 50 1 3 20 chain 30506 chr12 133851895 + 50623139 50623486 L1PA5 6144 + 5798 6143 83414 173 3 1 171 chain 4024 chr12 133851895 + 50650062 50650110 U6 107 - 42 90 207014 48 chain 39137 chr12 133851895 + 50651121 50651610 LTR3B_ 500 + 0 500 70559 150 6 12 213 0 5 120 chain 23404 chr12 133851895 + 50664612 50664878 AluY 311 + 19 286 113622 107 0 1 159 chain 102375 chr12 133851895 + 50684862 50686355 L1MA3 4352 - 447 1886 36169 55 1 0 50 3 0 221 11 5 32 0 1 55 4 0 83 0 1 15 2 0 36 12 31 14 1 0 284 1 0 163 1 0 69 2 1 28 71 21 17 2 0 5 0 2 36 1 2 95 6 5 61 5 0 51 chain 51921 chr12 133851895 + 50694308 50694888 L1PA4 6152 + 5573 6152 57669 325 1 0 254 chain 22100 chr12 133851895 + 50700305 50700568 AluSp 311 + 11 274 119782 263 chain 21820 chr12 133851895 + 50702005 50702280 AluSc 308 - 24 297 120942 158 3 1 114 chain 24517 chr12 133851895 + 50715108 50715416 AluSc8 310 + 0 305 107462 54 6 1 77 0 3 98 1 0 72 chain 236804 chr12 133851895 + 50716275 50719385 HERVL-int 5654 + 2818 5654 16938 114 0 1 573 0 4 137 0 1 270 294 0 838 0 2 91 1 0 125 0 9 50 7 0 43 0 1 353 0 1 110 0 1 4 1 0 30 0 3 47 0 6 22 chain 33040 chr12 133851895 + 50719385 50719827 MLT2A1 477 + 0 477 79153 137 0 1 30 1 5 31 9 0 181 3 43 30 1 0 19 chain 38702 chr12 133851895 + 50739216 50739712 L1P4 1494 - 279 773 71148 338 8 3 5 0 3 145 chain 23241 chr12 133851895 + 50752919 50753190 AluSp 311 + 20 291 114485 271 chain 23077 chr12 133851895 + 50764908 50765199 AluSg4 309 - 18 309 115267 84 1 2 87 1 0 118 chain 64784 chr12 133851895 + 50767383 50768093 L1PA3long 6157 + 5446 6156 50663 710 chain 5098 chr12 133851895 + 50797269 50797334 Charlie4a 502 + 341 406 194105 65 chain 24207 chr12 133851895 + 50818143 50818430 AluSp 311 - 14 301 109174 287 chain 22686 chr12 133851895 + 50828557 50828840 AluY 311 + 12 290 117138 106 1 0 15 2 0 150 2 0 7 chain 20811 chr12 133851895 + 50855993 50856273 AluSc5 308 + 10 293 124566 36 7 8 156 9 11 72 chain 9384 chr12 133851895 + 50857778 50857915 MSTA-int 1630 - 1481 1630 163640 12 10 22 115 chain 13236 chr12 133851895 + 50857930 50858091 MSTA 426 - 18 179 147332 161 chain 5136 chr12 133851895 + 50882293 50882349 U3 216 - 160 216 193713 56 chain 42974 chr12 133851895 + 50885666 50886167 MER9a1 513 - 0 513 65446 180 0 1 191 0 10 23 8 9 99 chain 394050 chr12 133851895 + 50886167 50890811 HERVK9-int 4720 - 0 4684 10317 173 1 29 128 1 0 28 5 6 1302 0 4 576 1 4 4 1 0 454 0 5 24 1 5 543 0 2 114 1 0 140 8 7 563 0 3 392 0 1 51 1 0 30 1 0 8 1 0 66 1 0 4 7 4 14 chain 42691 chr12 133851895 + 50892109 50892613 MER9a1 513 - 0 499 65787 180 5 0 319 chain 24477 chr12 133851895 + 50907848 50908136 AluSp 311 - 12 300 107666 288 chain 46342 chr12 133851895 + 50929483 50929991 L1PA3long 6157 - 0 508 61733 508 chain 19355 chr12 133851895 + 50933931 50934191 AluSg7 307 - 49 307 129058 103 25 23 132 chain 15744 chr12 133851895 + 50943103 50943320 AluY 311 + 72 290 139127 60 11 12 111 0 1 20 2 1 13 chain 24117 chr12 133851895 + 51025016 51025307 AluSc 308 - 17 308 109648 291 chain 22343 chr12 133851895 + 51057061 51057341 AluY 311 + 1 285 118727 15 2 3 83 0 1 29 0 1 18 1 2 132 chain 25852 chr12 133851895 + 51076126 51076436 AluY 311 + 0 307 100643 75 4 0 50 2 3 179 chain 7068 chr12 133851895 + 51079858 51079943 MIR 256 - 94 179 176955 85 chain 23285 chr12 133851895 + 51081344 51081680 L1PA8 5853 + 5520 5853 114281 25 0 1 18 1 0 44 2 0 68 0 1 10 7 6 47 2 1 21 1 0 69 0 2 14 1 0 6 chain 21320 chr12 133851895 + 51152018 51152265 AluSc5 308 + 10 257 122801 247 chain 25718 chr12 133851895 + 51156726 51157027 AluSp 311 - 9 311 101228 25 0 2 150 1 0 125 chain 39169 chr12 133851895 + 51159333 51159869 MER41A 554 + 0 554 70511 118 3 6 70 13 23 46 0 6 158 1 0 127 chain 12942 chr12 133851895 + 51160294 51160447 L1PA2 6032 - 1 159 148459 13 1 6 139 chain 149481 chr12 133851895 + 51162612 51165376 MER41-int 2638 + 128 2627 24690 42 30 14 29 1 0 4 3 1 30 1 0 5 17 6 31 9 5 96 3 0 54 338 401 16 7 0 7 0 7 131 0 1 223 0 2 85 0 9 509 13 12 56 0 1 321 3 5 91 320 0 83 1 14 25 8 10 100 0 1 72 chain 41771 chr12 133851895 + 51165388 51165936 MER41A 554 + 0 554 66939 35 6 8 124 0 1 298 23 25 50 0 1 12 chain 14036 chr12 133851895 + 51178683 51178835 L1PA3long 6157 - 1 153 144434 152 chain 16022 chr12 133851895 + 51208920 51209141 Tigger3b 1229 + 339 555 138301 20 1 0 142 10 6 48 chain 74108 chr12 133851895 + 51225819 51230368 L1PB1 5432 + 3453 5421 46456 215 0 3 63 0 2 539 3240 730 56 96 53 24 8 6 12 7 3 10 3 1 50 4 2 13 8 7 16 3 4 17 2 1 12 6 4 15 14 4 11 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 12 2 0 5 chain 17336 chr12 133851895 + 51226642 51227040 THE1D 372 + 0 360 134691 49 18 0 25 3 0 6 24 28 20 0 4 24 30 0 10 45 49 10 1 0 58 6 8 69 chain 5550 chr12 133851895 + 51231114 51231220 LTR47A 437 + 320 429 189566 16 1 5 32 24 23 33 chain 5041 chr12 133851895 + 51233278 51233349 MER3 215 + 78 165 194719 57 1 17 13 chain 12897 chr12 133851895 + 51237986 51238142 L1PA7 6471 - 7 160 148642 69 0 1 34 4 0 49 chain 411871 chr12 133851895 + 51260497 51267101 L1PB1 5432 + 34 5413 9749 204 11 10 27 9 10 117 1 0 206 0 4 107 0 6 135 0 1 315 0 1 217 2 1 7 4 0 3 10 0 14 0 1 648 7 8 345 7 5 74 2 0 214 1 0 4 0 1 384 452 0 558 11 19 25 0 1 4 4 3 662 0 2 103 13 18 124 0 2 191 5 0 288 749 2 9 1 0 24 2 1 8 1 0 10 5 1 9 2 0 53 19 17 43 1 0 16 2 0 6 1 0 9 9 0 16 3 1 4 1 0 14 2 0 24 1 0 17 8 7 10 1 0 9 chain 64147 chr12 133851895 + 51296271 51297036 LTR17 781 - 13 781 50941 420 0 4 17 2 1 67 2 1 113 0 1 144 chain 377140 chr12 133851895 + 51299643 51303979 HERV17-int 4347 - 0 4335 10842 170 2 0 474 2 0 95 1 0 367 0 1 98 0 1 1668 6 0 750 0 1 429 5 6 148 1 0 26 2 0 35 2 1 16 0 11 23 1 0 15 chain 62008 chr12 133851895 + 51305632 51307150 LTR17 781 - 10 781 51896 105 0 1 135 9 1 202 1 0 55 739 0 272 chain 53978 chr12 133851895 + 51306166 51306875 MER11A 1151 - 344 1151 56379 109 0 1 6 6 7 116 1 0 29 0 1 92 5 6 146 4 0 59 0 8 49 8 0 24 0 99 55 chain 7143 chr12 133851895 + 51316722 51316802 LTR12F 595 + 402 482 176457 80 chain 5520 chr12 133851895 + 51327814 51327876 LTR72B 493 + 385 447 189846 62 chain 25188 chr12 133851895 + 51337211 51337505 AluYf4 310 + 0 295 103809 206 1 2 87 chain 45732 chr12 133851895 + 51338684 51339228 L1P1 4361 + 3797 4341 62287 158 0 3 192 1 0 155 1 0 23 2 1 12 chain 12351 chr12 133851895 + 51340557 51340701 L1PA5 6144 + 5999 6143 150827 144 chain 545880 chr12 133851895 + 51366295 51372435 L1PA5 6144 + 0 6144 1960 995 0 1 26 0 1 2147 1 0 915 4 0 170 0 3 40 1 0 989 0 3 225 0 2 627 chain 3253 chr12 133851895 + 51395306 51395368 MER41B 635 + 482 545 219954 12 14 15 36 chain 10084 chr12 133851895 + 51399607 51399794 MER4D1 891 + 4 197 160163 27 1 0 11 16 17 51 3 0 5 9 12 46 0 6 18 chain 21311 chr12 133851895 + 51399817 51400087 AluSp 311 + 23 287 122827 76 6 0 188 chain 3439 chr12 133851895 + 51404781 51404821 U7 62 + 0 40 216392 40 chain 10093 chr12 133851895 + 51437533 51437660 MER4A 717 - 0 133 160117 8 1 0 4 0 1 56 0 6 58 chain 6769 chr12 133851895 + 51452531 51452628 MER20 218 - 86 181 179183 46 7 5 44 chain 68710 chr12 133851895 + 51472366 51473152 L1PA5 6144 + 5345 6144 48940 341 1 0 322 0 12 110 1 3 11 chain 5985 chr12 133851895 + 51496099 51496221 FLAM_A 137 + 19 127 185386 41 21 11 13 9 5 38 chain 18952 chr12 133851895 + 51508574 51508860 AluSq2 311 + 10 298 130221 46 30 32 45 0 1 41 1 2 108 2 0 13 chain 11521 chr12 133851895 + 51522132 51522269 L1PA4 6152 + 6014 6152 154209 84 0 1 53 chain 24264 chr12 133851895 + 51524833 51525131 AluY 311 + 3 298 108878 120 9 4 148 0 2 21 chain 66574 chr12 133851895 + 51541350 51542201 L1PB1 5432 + 4241 5103 49840 144 1 0 116 7 10 41 0 3 71 4 0 22 0 1 80 0 4 143 0 1 14 0 1 4 1 0 182 0 4 21 chain 8520 chr12 133851895 + 51556684 51556789 U6 107 + 1 106 168189 105 chain 24113 chr12 133851895 + 51569139 51569429 AluYc3 301 - 20 301 109683 38 8 0 129 2 1 113 chain 4840 chr12 133851895 + 51579526 51579638 MER2 342 - 90 200 196876 22 4 1 11 21 25 16 3 0 35 chain 8974 chr12 133851895 + 51602745 51602911 MLT1A0 366 + 181 361 165754 17 16 20 23 4 13 22 12 13 72 chain 14979 chr12 133851895 + 51624291 51624513 MER30 238 + 1 238 141383 78 0 4 23 5 0 7 2 15 67 4 7 36 chain 24993 chr12 133851895 + 51650224 51650533 AluSp 311 + 1 294 104834 140 0 1 144 17 0 8 chain 9360 chr12 133851895 + 51679102 51679262 FAM 185 + 20 171 163750 57 8 7 64 3 5 10 10 0 8 chain 25041 chr12 133851895 + 51715188 51715471 AluSp 311 - 17 300 104592 283 chain 22546 chr12 133851895 + 51718451 51718730 AluSx 319 + 0 285 117819 77 0 6 202 chain 20680 chr12 133851895 + 51721912 51722178 MER1A 529 - 0 270 125034 54 9 13 203 chain 22594 chr12 133851895 + 51760772 51761055 AluSp 311 + 7 294 117606 135 1 7 140 2 0 5 chain 10056 chr12 133851895 + 51764323 51764465 L1MB3 1562 + 1272 1425 160299 79 1 0 17 5 18 35 1 0 4 chain 30948 chr12 133851895 + 51766630 51767006 THE1C-int 1605 + 1218 1593 82605 205 1 0 31 0 1 81 1 0 57 chain 8200 chr12 133851895 + 51790173 51790305 MER96B 391 - 1 126 169953 23 1 0 4 8 6 20 1 0 46 3 0 26 chain 12934 chr12 133851895 + 51801581 51802002 MLT1C 463 - 11 454 148486 40 9 14 16 187 218 29 1 0 10 7 1 17 0 1 54 7 0 26 2 1 16 chain 50309 chr12 133851895 + 51831989 51832716 L1MA5A 2387 - 91 789 58784 66 25 0 8 13 10 25 1 0 32 2 0 47 1 0 75 6 5 197 0 2 57 0 3 5 14 11 117 1 0 24 0 3 11 chain 76012 chr12 133851895 + 51848070 51849038 LTR5_Hs 974 - 0 974 45472 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 30037 chr12 133851895 + 51877524 51877865 L1PA5 6144 - 0 341 84692 341 chain 7456 chr12 133851895 + 51882216 51882300 LTR45C 530 - 435 519 174417 84 chain 21554 chr12 133851895 + 51886470 51886752 L1PA8 5853 - 0 276 121950 92 2 1 19 2 1 52 2 1 8 1 0 71 2 0 31 chain 17398 chr12 133851895 + 51889564 51889827 L1MB3 1562 - 222 524 134515 136 24 62 53 1 2 49 chain 82534 chr12 133851895 + 51937462 51938496 MER11C 1089 + 0 1054 42523 246 0 9 62 0 4 369 1 5 4 1 0 38 0 1 127 0 1 28 4 7 19 1 0 134 chain 23327 chr12 133851895 + 51942813 51943100 AluSp 311 + 11 297 114047 8 0 1 154 0 1 113 3 0 9 chain 135633 chr12 133851895 + 51953374 51956382 L1PA3long 6157 - 0 3014 1379 7 0 1 146 0 1 2512 5 7 27 0 2 311 chain 565345 chr12 133851895 + 51956415 51962441 L1HS 6032 - 2 6032 193 5842 1 5 183 chain 141631 chr12 133851895 + 51962441 51965582 L1PA3long 6157 - 3014 6157 1379 211 0 1 2272 0 1 658 chain 7766 chr12 133851895 + 51975260 51975353 Tigger1 2417 + 425 518 172504 93 chain 52776 chr12 133851895 + 51976727 51977335 L1PA6 6164 + 5554 6162 57149 608 chain 4656 chr12 133851895 + 51996149 51996215 L1MB3 1562 + 1351 1419 198999 44 1 3 21 chain 19792 chr12 133851895 + 51998331 51998605 AluSp 311 - 29 300 127843 39 5 6 31 1 3 83 7 0 65 1 2 42 chain 75988 chr12 133851895 + 51998918 52000000 L1PB1 5432 - 8 1081 45490 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 17 9 16 13 1 0 44 1 0 16 2 1 53 17 11 9 1 0 9 1 0 24 1 0 7 3 4 473 4 0 87 0 3 31 10 12 10 0 1 25 0 1 81 0 1 27 chain 84727 chr12 133851895 + 52001112 52004620 L1PBa 3878 - 101 2635 41628 5 1 0 14 5 0 9 2 1 10 2 0 22 2 1 95 3 0 126 4 7 265 3 0 112 2231 1278 72 0 4 14 7 17 81 0 1 12 48 26 235 1 0 127 chain 20279 chr12 133851895 + 52003525 52003758 L1PA4 6152 + 5917 6143 126282 79 7 0 147 chain 3511 chr12 133851895 + 52009000 52009051 L1MEf 1413 - 72 122 215202 20 1 0 30 chain 115427 chr12 133851895 + 52017399 52018674 L1PA4 6152 - 0 1278 32633 333 1 4 941 chain 6147 chr12 133851895 + 52034053 52034197 Tigger1 2417 + 2273 2417 184019 62 2 0 4 13 0 4 2 0 17 26 43 14 chain 128236 chr12 133851895 + 52038295 52039749 SVA_D 2077 + 311 2075 28511 305 0 76 31 0 3 35 3 0 126 0 83 33 1 52 293 1 98 282 0 3 344 chain 123657 chr12 133851895 + 52042585 52044160 THE1A-int 1579 - 0 1579 29826 200 1 0 67 3 1 201 0 2 167 9 4 6 0 6 265 3 5 4 0 1 95 1 2 553 chain 1968 chr12 133851895 + 52044160 52044283 THE1A 353 - 0 123 121588 123 chain 14126 chr12 133851895 + 52044363 52044521 MER9a2 513 + 2 160 144124 158 chain 45755 chr12 133851895 + 52044537 52045050 MER9a1 513 - 0 513 62271 513 chain 3632 chr12 133851895 + 52045286 52045513 THE1A 353 - 123 353 121588 35 1 2 68 8 6 6 0 2 17 20 19 9 0 2 11 0 2 4 1 0 47 chain 3665 chr12 133851895 + 52059472 52059515 MER34 540 - 54 97 212476 43 chain 3816 chr12 133851895 + 52083713 52083810 Charlie4z 170 - 0 163 210154 17 13 12 22 16 83 29 chain 26506 chr12 133851895 + 52114041 52114390 L1PA5 6144 + 5785 6135 98018 25 0 1 169 11 4 15 0 7 129 chain 8134 chr12 133851895 + 52124869 52125010 L1MA2 4263 - 216 337 170310 82 20 9 10 9 0 20 chain 45259 chr12 133851895 + 52127980 52128494 MER9a1 513 - 0 512 62758 68 2 0 444 chain 365777 chr12 133851895 + 52128495 52132939 HERVK9-int 4720 - 0 4714 11211 275 0 1 47 1 2 488 4 52 528 22 21 37 2 0 134 0 8 778 2 1 689 1 170 118 0 68 1143 1 0 28 2 1 7 1 0 50 69 51 17 chain 45808 chr12 133851895 + 52133544 52134056 MER9a1 513 - 3 513 62221 65 2 0 445 chain 12802 chr12 133851895 + 52135786 52135962 L1MA2 4263 - 4049 4227 149042 52 3 1 90 0 4 31 chain 11732 chr12 133851895 + 52160180 52160353 MER20 218 - 21 201 153333 38 0 3 19 0 2 13 3 0 31 10 14 38 0 1 21 chain 374424 chr12 133851895 + 52190899 52195556 HERVL-int 5654 - 0 4706 10942 229 4 0 60 1 4 20 8 11 55 0 3 315 0 6 445 5 6 585 4 16 468 2 3 4 1 0 978 3 0 266 0 4 85 1 11 124 7 0 22 6 29 127 7 0 435 15 19 205 0 1 170 chain 10703 chr12 133851895 + 52275898 52276046 THE1C 375 - 72 221 157403 109 8 9 31 chain 40518 chr12 133851895 + 52278365 52278948 LTR10A 586 + 0 561 68570 111 4 3 64 1 2 18 28 0 8 5 6 26 0 1 42 1 2 135 7 10 133 chain 3440 chr12 133851895 + 52289296 52289338 MIRb 242 + 20 62 216371 42 chain 22609 chr12 133851895 + 52323754 52324043 AluY 311 + 0 291 117544 9 1 0 120 1 2 73 0 1 50 0 1 35 chain 7069 chr12 133851895 + 52350431 52350541 MER82 654 + 52 168 176949 73 12 18 25 chain 6495 chr12 133851895 + 52352069 52352179 MER1B 344 - 5 120 181299 54 22 27 34 chain 9082 chr12 133851895 + 52381440 52381547 U6 107 + 0 107 165149 107 chain 23823 chr12 133851895 + 52381971 52382260 AluSc 308 + 0 289 111344 29 1 0 164 0 1 95 chain 6858 chr12 133851895 + 52405722 52405949 MSTB2 466 - 24 248 178516 26 0 1 56 126 122 19 chain 23885 chr12 133851895 + 52459680 52459960 AluSp 311 - 31 311 110989 280 chain 4031 chr12 133851895 + 52494846 52494896 L1MA4 2864 + 2573 2623 206900 50 chain 22637 chr12 133851895 + 52495490 52495782 AluSp 311 - 6 297 117389 198 13 12 81 chain 208879 chr12 133851895 + 52509790 52512188 HERVE-int 4064 - 0 2398 18574 473 0 1 114 1 0 71 3 1 968 1 0 61 0 3 706 chain 7328 chr12 133851895 + 52512654 52512748 PABL_A 660 + 0 102 175246 81 1 9 12 chain 41812 chr12 133851895 + 52514530 52515072 MER41A 554 - 0 541 66875 356 0 1 50 8 7 72 1 0 55 chain 6813 chr12 133851895 + 52556035 52556137 MSTD 398 - 226 352 178850 12 9 33 81 chain 46504 chr12 133851895 + 52632662 52633249 LTR71B 605 - 0 605 61591 71 0 1 23 0 1 352 15 31 126 chain 18481 chr12 133851895 + 52634562 52634800 L1PA6 6164 - 2 239 131552 135 7 0 9 4 10 83 chain 11898 chr12 133851895 + 52645065 52645253 MER30 238 - 0 201 152614 39 3 0 61 31 47 54 chain 47748 chr12 133851895 + 52653920 52654486 LTR19B 566 - 0 566 60659 52 0 1 65 0 1 18 4 0 53 0 2 374 chain 143592 chr12 133851895 + 52802821 52804484 SVA_D 2077 + 0 2076 25545 542 0 40 105 0 40 171 1 0 4 50 56 29 0 51 55 1 0 106 0 274 503 0 4 96 chain 4454 chr12 133851895 + 52803644 52803694 SVA_D 2077 + 1262 1312 116130 50 chain 6965 chr12 133851895 + 52814581 52814699 MER3 215 + 97 214 177710 72 23 22 23 chain 125626 chr12 133851895 + 52851520 52853755 L1PREC2 3366 - 319 2468 29208 36 10 8 31 25 11 9 4 1 25 7 5 15 13 8 11 20 20 14 3 0 4 2 4 36 11 10 47 2 0 34 2 1 46 23 3 10 3 1 67 1 0 742 14 19 131 7 10 45 0 1 29 0 263 35 12 11 5 0 1 13 0 1 12 319 5 222 0 8 41 5 6 92 chain 6950 chr12 133851895 + 52855628 52855892 L1PBa 3878 + 158 287 177811 5 1 0 50 70 0 3 62 0 19 18 16 36 chain 20174 chr12 133851895 + 52871559 52871941 MSTA 426 + 5 426 126604 83 21 41 7 0 4 76 45 41 43 25 44 17 0 1 4 1 0 60 chain 30796 chr12 133851895 + 52894272 52894698 LTR3B 427 - 0 427 82874 57 5 6 23 1 0 13 10 8 22 2 0 139 2 7 152 chain 5509 chr12 133851895 + 52899452 52899614 MER8 282 + 0 235 189948 51 35 143 10 35 0 31 chain 2850 chr12 133851895 + 52935685 52935721 MER117 194 - 51 87 227855 36 chain 4121 chr12 133851895 + 52940936 52941001 MIRc 230 + 52 127 205635 23 6 16 36 chain 17520 chr12 133851895 + 52949206 52949399 L1PA8A 6298 + 6086 6279 134212 193 chain 47605 chr12 133851895 + 52987977 52988548 L1PA5 6144 + 5568 6144 60760 303 0 1 127 0 7 129 3 0 9 chain 17358 chr12 133851895 + 53029372 53029736 L1PB1 5432 + 5093 5427 134635 10 3 0 12 1 0 23 1 0 9 23 23 50 2 1 14 2 1 59 26 13 19 7 4 15 2 0 24 1 0 22 1 0 12 1 0 18 2 0 5 chain 37934 chr12 133851895 + 53106015 53106453 L1PA5 6144 + 5707 6141 72229 428 4 0 6 chain 5394 chr12 133851895 + 53111038 53111140 MER20 218 - 21 123 191044 17 20 22 5 3 0 23 0 1 34 chain 13106 chr12 133851895 + 53121562 53121713 L1PA4 6152 + 6001 6152 147824 151 chain 33194 chr12 133851895 + 53131016 53131394 L1P1 4361 - 92 471 78897 119 1 0 73 0 2 185 chain 64158 chr12 133851895 + 53131394 53132113 L1PA4 6152 + 5422 6141 50936 569 3 0 5 0 2 40 0 1 102 chain 82859 chr12 133851895 + 53154710 53155752 MER11B 1079 - 30 1079 42392 172 0 1 102 2 4 223 6 5 4 0 1 124 0 1 5 1 0 177 0 5 70 1 0 155 chain 37091 chr12 133851895 + 53179833 53180240 L1PA3long 6157 + 5749 6156 73396 407 chain 174195 chr12 133851895 + 53248285 53250405 L1PA6 6164 + 4046 6160 21573 169 0 2 151 0 4 271 3 0 353 0 1 194 2 1 126 1 5 254 0 1 60 20 8 356 2 0 5 1 4 34 1 0 24 1 2 78 3 0 11 chain 24575 chr12 133851895 + 53284546 53284838 L1PA5 6144 + 5855 6139 107106 183 8 0 101 chain 23514 chr12 133851895 + 53353170 53353436 AluY 311 + 10 276 113045 266 chain 22621 chr12 133851895 + 53360848 53361128 AluSp 311 + 10 289 117482 267 2 1 11 chain 9303 chr12 133851895 + 53362099 53362273 L1MA3 4352 + 4177 4352 164047 80 1 8 17 2 1 5 1 0 21 25 21 22 chain 21322 chr12 133851895 + 53406070 53406348 AluSp 311 + 14 291 122789 255 9 8 14 chain 22321 chr12 133851895 + 53477288 53477579 AluSp 311 + 11 297 118818 58 6 0 204 8 9 15 chain 3310 chr12 133851895 + 53478236 53478298 L1ME1 1623 - 1158 1254 218766 35 11 45 16 chain 5963 chr12 133851895 + 53483336 53483486 MLT1C 463 + 29 179 185577 20 2 0 5 1 2 44 52 53 26 chain 9258 chr12 133851895 + 53486999 53487505 L1PA8 5853 + 5671 5853 164270 11 1 0 5 0 2 5 1 0 24 369 45 90 chain 44548 chr12 133851895 + 53500347 53500903 PABL_A 660 - 0 650 63526 23 2 1 127 0 3 210 0 44 38 0 39 83 1 10 72 chain 123665 chr12 133851895 + 53501706 53504126 PABL_A-int 1935 - 42 1837 29819 4 1 0 9 2 0 9 6 1 16 2 0 17 1 0 61 1 2 47 1 0 17 3 4 183 1 2 134 0 1 14 1 0 5 0 20 359 1 0 102 0 1 30 301 0 161 2 1 54 329 0 26 2 1 138 1 0 62 1 3 70 1 0 5 1 2 9 7 6 21 1 0 37 7 8 108 23 21 17 2 0 7 chain 51603 chr12 133851895 + 53507324 53507936 PABL_A 660 - 0 660 57891 448 0 39 83 0 9 81 chain 62070 chr12 133851895 + 53516123 53516793 SVA_D 2077 - 2 676 51869 97 0 4 573 chain 7992 chr12 133851895 + 53532328 53532424 U6 107 - 0 96 171104 96 chain 8687 chr12 133851895 + 53535001 53535137 MER4A 717 + 2 137 167266 24 1 0 5 9 10 82 2 1 13 chain 22492 chr12 133851895 + 53548899 53549143 AluY 311 + 54 298 118056 244 chain 11131 chr12 133851895 + 53550559 53550683 L1PA5 6144 - 2 126 155694 124 chain 6998 chr12 133851895 + 53595704 53595830 L1MB5 1630 + 249 370 177468 32 6 1 18 2 0 17 10 11 30 0 1 11 chain 19769 chr12 133851895 + 53643186 53643438 AluSp 311 + 0 301 127910 12 8 55 51 0 2 181 chain 4619 chr12 133851895 + 53652438 53652549 MIR 256 + 104 214 199407 36 23 21 23 13 14 16 chain 5970 chr12 133851895 + 53655823 53655896 Tigger2a 444 - 59 132 185515 73 chain 29149 chr12 133851895 + 53657720 53658078 L1PA7 6471 - 8 369 88318 161 1 0 4 0 1 35 0 2 17 0 1 140 chain 23574 chr12 133851895 + 53668987 53669253 AluY 311 + 23 291 112714 108 0 2 158 chain 28849 chr12 133851895 + 53698645 53698951 AluYa5 310 - 4 310 89674 306 chain 24834 chr12 133851895 + 53716866 53717181 AluSp 311 + 1 311 105698 124 1 0 127 5 1 58 chain 23764 chr12 133851895 + 53752183 53752480 AluSp 311 + 0 297 111682 25 2 0 255 0 2 15 chain 9644 chr12 133851895 + 53756183 53756289 AluSp 311 + 28 134 162375 106 chain 26409 chr12 133851895 + 53767012 53767307 AluYk4 311 + 6 303 98378 268 0 2 27 chain 22686 chr12 133851895 + 53768033 53768313 AluSp 311 - 31 311 117139 280 chain 2606 chr12 133851895 + 53777684 53777722 MER58C 217 - 17 50 231637 20 5 0 13 chain 29262 chr12 133851895 + 53786131 53786440 AluYa5 310 - 2 310 87730 182 1 0 126 chain 12177 chr12 133851895 + 53799647 53799791 L1PA4 6152 + 6004 6152 151507 92 0 4 52 chain 24935 chr12 133851895 + 53804286 53804576 AluYc3 301 - 6 301 105140 34 0 4 142 1 2 113 chain 23027 chr12 133851895 + 53810625 53810903 AluY 311 + 10 294 115499 96 0 4 22 0 1 47 0 1 113 chain 60910 chr12 133851895 + 53831424 53832088 SVA_C 1631 + 967 1630 52381 51 1 0 612 chain 28986 chr12 133851895 + 53832469 53832780 AluYa5 310 + 0 310 89055 123 1 0 187 chain 27889 chr12 133851895 + 53838113 53838412 AluYk11 308 - 9 308 93402 299 chain 14589 chr12 133851895 + 53920040 53920296 Tigger2 2703 + 2306 2567 142633 59 44 47 29 4 3 47 0 3 73 chain 11867 chr12 133851895 + 53958616 53958784 MER30 238 + 58 238 152755 48 5 0 10 1 19 33 1 0 70 chain 4668 chr12 133851895 + 53970856 53970912 L1MCa 1829 + 839 895 198883 56 chain 26321 chr12 133851895 + 53971218 53971515 AluYk4 311 + 0 295 98734 281 2 0 14 chain 67186 chr12 133851895 + 54000350 54001095 L1PA4 6152 - 1 748 49572 112 0 1 225 0 1 408 chain 24032 chr12 133851895 + 54002933 54003226 AluSp 311 - 9 300 110157 6 2 0 285 chain 25003 chr12 133851895 + 54030807 54031100 AluSp 311 - 5 300 104763 241 0 2 52 chain 116285 chr12 133851895 + 54039302 54040643 L1PA6 6164 + 4811 6162 32346 27 0 4 906 0 5 35 0 1 373 chain 30427 chr12 133851895 + 54076186 54076504 AluYb8 318 - 0 318 83629 318 chain 10249 chr12 133851895 + 54085576 54085702 THE1D 372 + 246 372 159378 126 chain 4913 chr12 133851895 + 54098733 54099253 MER33 330 - 47 282 196135 34 4 0 18 435 154 29 chain 29679 chr12 133851895 + 54161754 54162068 AluYb8 318 + 0 314 85904 314 chain 6334 chr12 133851895 + 54178433 54178505 MER5A 189 - 114 186 182511 72 chain 13148 chr12 133851895 + 54241492 54241723 L1PA16 3655 - 36 245 147652 16 5 0 7 37 17 89 6 9 71 chain 26789 chr12 133851895 + 54245421 54245701 AluYb8 318 + 26 306 97015 280 chain 14822 chr12 133851895 + 54262908 54263154 L1PA16 3655 - 36 255 141879 16 5 0 7 7 5 7 17 0 6 3 0 178 chain 54203 chr12 133851895 + 54268216 54268823 L1PA4 6152 - 1 609 56230 112 0 1 33 2 1 191 0 1 269 chain 179423 chr12 133851895 + 54271657 54273670 L1PA5 6144 - 9 2030 21041 249 0 1 192 0 1 173 0 1 217 0 4 51 0 1 1131 chain 11286 chr12 133851895 + 54280427 54280573 L1PA8 5853 + 5698 5843 155109 42 2 1 19 1 0 26 0 1 56 chain 44887 chr12 133851895 + 54291702 54292262 L1PA5 6144 - 0 571 63192 11 2 7 127 1 5 91 3 4 87 1 2 237 chain 24340 chr12 133851895 + 54309256 54309548 AluSp 311 - 15 303 108420 60 5 1 227 chain 10307 chr12 133851895 + 54315262 54315445 L1PA8 5853 + 5680 5853 159102 10 1 0 40 36 34 17 7 0 72 chain 24796 chr12 133851895 + 54461325 54461631 AluY 311 + 11 307 105907 45 7 0 242 3 0 9 chain 3084 chr12 133851895 + 54557554 54557587 MIRb 242 + 112 145 223238 33 chain 24738 chr12 133851895 + 54591812 54592115 AluSg7 307 - 5 307 106234 32 8 7 263 chain 25187 chr12 133851895 + 54629124 54629410 AluY 311 + 8 295 103812 124 0 1 162 chain 30091 chr12 133851895 + 54644307 54644625 AluYb8 318 + 0 318 84521 318 chain 25141 chr12 133851895 + 54692015 54692314 AluSp 311 + 6 305 104059 299 chain 25056 chr12 133851895 + 54716867 54717149 AluY 311 + 11 294 104522 121 0 1 161 chain 29157 chr12 133851895 + 54853506 54853809 AluYa5 310 - 7 310 88276 303 chain 156969 chr12 133851895 + 54881266 54883083 SVA_D 2077 - 0 2077 23728 639 1 0 36 10 9 4 0 1 207 1 265 28 0 1 36 0 1 63 40 0 137 0 40 597 5 0 13 chain 11202 chr12 133851895 + 54978229 54978360 L1PA16 3655 + 3447 3578 155413 131 chain 3677 chr12 133851895 + 55018503 55018545 L1MB2 1706 - 22 64 212275 42 chain 23190 chr12 133851895 + 55020253 55020597 THE1B 368 + 0 368 114726 40 0 15 114 1 0 29 35 45 125 chain 148033 chr12 133851895 + 55031736 55033415 L1PA6 6164 + 4468 6151 24874 31 0 2 300 0 2 1348 chain 49765 chr12 133851895 + 55058060 55058614 L1PA4 6152 - 1 560 59183 243 0 5 311 chain 34257 chr12 133851895 + 55058630 55059004 L1PA4 6152 + 5120 5494 77266 374 chain 14984 chr12 133851895 + 55063019 55063187 L1PA3long 6157 + 5989 6157 141372 168 chain 85476 chr12 133851895 + 55087754 55088843 L1PA8 5853 + 4738 5846 41355 188 0 9 70 0 1 4 6 4 55 6 7 241 0 17 228 1 0 47 2 0 69 12 10 51 3 2 19 1 0 86 chain 38187 chr12 133851895 + 55093185 55093658 LTR15 485 - 10 485 71852 18 0 1 17 1 0 152 0 4 132 0 2 25 4 0 124 chain 19276 chr12 133851895 + 55097878 55098124 L1PA8 5853 - 0 242 129306 94 1 0 18 2 1 46 1 0 15 1 0 68 chain 25649 chr12 133851895 + 55101120 55101440 AluY 311 + 0 301 101498 123 1 0 8 14 0 119 4 0 51 chain 23413 chr12 133851895 + 55103040 55103331 AluSp 311 + 0 304 113577 46 0 13 245 chain 80078 chr12 133851895 + 55107524 55108522 L1PA7 6471 - 5 1004 43551 591 24 24 178 0 2 50 1 0 154 chain 30697 chr12 133851895 + 55108522 55109219 L1P3 4156 + 3603 3997 82727 218 325 22 154 chain 53352 chr12 133851895 + 55126554 55127240 L1PA8 5853 - 0 679 56803 93 1 0 19 2 1 47 1 0 11 1 0 5 2 0 5 0 2 62 2 0 44 1 0 390 chain 409987 chr12 133851895 + 55131736 55137215 L1PB1 5432 - 12 5408 9802 16 1 0 6 12 11 17 1 0 24 2 0 6 14 13 19 19 8 4 1 0 15 1 0 36 13 12 12 2 1 51 2 0 11 4 0 11 1 0 28 77 17 481 3 0 450 0 4 438 3 0 225 3 4 134 0 1 95 0 1 141 1 2 289 1 0 11 0 1 229 0 1 301 1 2 419 3 0 155 0 1 114 0 5 201 8 0 174 0 1 361 0 1 135 12 13 31 0 1 37 1 5 30 1 0 54 0 2 3 4 0 21 6 5 275 0 1 134 22 23 66 chain 107661 chr12 133851895 + 55139961 55142440 L1PB1 5432 + 3618 5421 34814 89 373 70 314 338 0 21 7 0 6 5 13 138 3 13 222 12 17 88 8 11 8 3 0 140 11 14 30 38 43 127 5 6 115 4 0 11 22 0 9 12 0 10 1 0 13 1 0 12 17 11 51 2 1 16 1 0 34 98 82 14 0 6 20 1 0 11 1 0 17 chain 38262 chr12 133851895 + 55155410 55155844 L1PA5 6144 + 5704 6138 71761 434 chain 288283 chr12 133851895 + 55160751 55163999 L1PA4 6152 - 0 3254 14141 6 0 5 102 0 1 12 0 3 146 1 5 1073 0 1 500 7 0 1002 1 0 398 chain 32321 chr12 133851895 + 55166708 55167227 L1MA2 4263 - 367 877 80325 90 23 20 119 10 9 38 41 36 126 1 0 11 0 1 60 chain 530877 chr12 133851895 + 55170553 55176666 L1PA5 6144 + 3 6140 4099 646 0 7 10 7 0 282 0 4 335 0 8 831 0 3 1307 0 6 68 1 0 720 1 2 559 0 1 308 0 1 144 0 1 894 chain 563973 chr12 133851895 + 55182357 55188400 L1HS 6032 + 3 6032 239 6015 14 0 14 chain 85285 chr12 133851895 + 55193259 55194264 L1PA5 6144 + 5132 6139 41427 511 1 0 5 1 2 125 0 1 83 0 1 115 0 1 11 2 1 151 chain 447724 chr12 133851895 + 55200420 55206305 L1PA7 6471 - 12 5575 8820 143 0 10 7 11 1 290 1 0 304 0 1 79 0 3 415 309 0 142 14 0 24 0 1 84 1 0 614 2 4 335 2 0 70 2 1 97 1 0 5 1 2 245 0 1 4 1 0 80 1 0 427 1 4 347 0 1 85 0 1 8 0 1 162 9 1 381 0 1 15 1 2 4 1 0 280 5 6 11 1 0 6 0 1 354 1 4 134 0 1 358 4 0 6 chain 529168 chr12 133851895 + 55206359 55212504 L1PA4 6152 - 0 6151 4279 13 0 3 841 0 1 1055 1 2 937 2 1 94 1 2 32 1 0 1726 6 5 203 0 1 160 7 8 758 3 4 305 chain 32188 chr12 133851895 + 55227398 55227757 L1PA4 6152 + 5784 6143 80546 359 chain 38913 chr12 133851895 + 55228799 55229430 L1PB3 3668 - 102 694 70848 37 13 4 11 5 5 6 1 0 4 1 0 17 24 8 83 9 8 92 1 0 102 1 0 103 2 1 79 6 0 19 2 0 13 chain 11034 chr12 133851895 + 55235257 55235658 L1MA9 1812 - 289 698 156073 8 1 0 18 45 28 11 2 1 22 131 141 29 25 39 42 2 1 19 0 4 46 chain 101832 chr12 133851895 + 55243949 55245113 L1PA4 6152 - 0 1170 36305 12 1 4 12 0 1 84 0 1 914 0 1 141 chain 105893 chr12 133851895 + 55245115 55246299 L1PA4 6152 + 3810 4998 35284 19 0 1 475 1 0 46 0 4 643 chain 548852 chr12 133851895 + 55276678 55282812 L1PA3long 6157 - 9 6153 1595 458 0 2 387 0 1 942 7 11 2386 3 1 39 0 1 1346 1 5 565 chain 15623 chr12 133851895 + 55292341 55292584 L1PA8 5853 + 5614 5853 139511 68 1 0 11 10 8 14 5 6 19 2 1 19 1 0 93 chain 540246 chr12 133851895 + 55294202 55300312 L1PA4 6152 + 6 6151 2781 964 0 1 4 2 1 141 0 15 1570 0 3 594 1 0 434 0 12 195 0 1 413 0 4 771 0 1 1021 chain 20878 chr12 133851895 + 55302309 55302555 AluY 311 + 39 286 124366 93 0 1 153 chain 5275 chr12 133851895 + 55303369 55303433 L1MA4 2864 + 99 163 192255 64 chain 15526 chr12 133851895 + 55306961 55307190 THE1B 368 - 120 368 139811 46 2 0 10 2 0 23 1 0 86 15 39 44 chain 30012 chr12 133851895 + 55315654 55315966 AluYb9 318 - 6 318 84772 312 chain 34294 chr12 133851895 + 55317126 55317549 MER57A1 433 - 7 433 77223 18 0 4 121 0 1 103 2 0 179 chain 25520 chr12 133851895 + 55321170 55321528 THE1B 368 + 0 368 102142 169 1 0 29 35 45 84 0 1 40 chain 17599 chr12 133851895 + 55324474 55326416 LTR7B 505 - 140 505 134001 65 0 88 17 35 11 69 1648 7 108 chain 3966 chr12 133851895 + 55324660 55324702 LTR7B 505 - 400 442 207892 42 chain 13793 chr12 133851895 + 55326503 55326740 MER61A 341 - 99 341 145294 20 58 63 159 chain 14215 chr12 133851895 + 55375191 55375355 L1PA5 6144 + 5970 6134 143829 164 chain 20918 chr12 133851895 + 55441355 55441585 L1P1 4361 - 1154 1384 124217 230 chain 16692 chr12 133851895 + 55470594 55470795 L1PA10 4194 - 1654 1856 136428 39 0 1 162 chain 538823 chr12 133851895 + 55475152 55481189 L1PA3long 6157 - 0 6157 3021 849 0 4 1571 1 0 1331 0 1 1355 1 0 142 8 136 64 0 7 33 22 0 88 0 2 317 5 6 98 0 1 152 chain 17448 chr12 133851895 + 55484649 55484864 L1PA5 6144 + 5863 6125 134379 129 1 0 4 0 1 40 0 47 41 chain 26995 chr12 133851895 + 55488931 55489233 L1PA4 6152 + 5838 6140 96300 302 chain 562375 chr12 133851895 + 55490040 55496067 L1HS 6032 - 1 6032 286 3065 0 1 1509 0 3 1453 chain 59737 chr12 133851895 + 55503414 55504222 MER61-int 3695 - 2350 3188 52972 106 3 0 281 0 2 103 9 7 82 0 9 5 0 2 106 2 1 81 3 26 27 chain 50255 chr12 133851895 + 55504402 55504944 L1PA3long 6157 - 0 542 58824 542 chain 24987 chr12 133851895 + 55512303 55512652 L1PB4 2604 - 130 483 104876 27 9 13 22 0 2 31 2 0 258 chain 19128 chr12 133851895 + 55512690 55512936 L1P3 4156 - 2401 2801 129748 11 0 154 235 chain 73655 chr12 133851895 + 55513368 55514261 L1PA7 6471 + 5572 6466 46707 49 2 1 432 0 1 375 0 1 35 chain 33933 chr12 133851895 + 55518322 55519464 LTR12_ 688 + 0 675 77725 239 12 35 28 15 17 27 110 8 49 542 102 106 0 50 14 chain 33004 chr12 133851895 + 55518853 55519261 L1PA5 6144 - 16 426 79209 132 12 14 264 chain 546244 chr12 133851895 + 55545240 55551380 L1PA4 6152 - 0 6148 1917 6 3 0 672 1 0 202 0 13 517 0 3 73 0 3 654 1 0 2088 0 1 1344 1 0 116 6 0 456 chain 534471 chr12 133851895 + 55555389 55561398 L1PA3long 6157 - 0 6157 3655 4 0 1 50 0 4 1203 0 1 3481 0 5 502 1 129 24 11 12 37 0 7 541 5 6 150 chain 19861 chr12 133851895 + 55565956 55566200 THE1B-int 1605 + 27 272 127619 107 0 1 137 chain 9827 chr12 133851895 + 55567725 55567883 MER61-int 3695 + 2518 2678 161468 71 33 35 54 chain 14717 chr12 133851895 + 55569857 55570201 THE1B 368 - 0 368 142213 31 62 47 23 61 98 53 6 8 108 chain 29146 chr12 133851895 + 55575466 55575814 L1PA10 4194 - 44 389 88335 34 3 0 311 chain 11021 chr12 133851895 + 55577838 55578060 L1PB1 5432 + 5222 5422 156123 14 1 0 45 1 0 15 1 0 6 17 6 19 28 23 20 1 0 21 1 0 13 1 0 18 chain 6498 chr12 133851895 + 55603583 55604192 L1PA5 6144 - 12 621 51680 609 chain 441490 chr12 133851895 + 55604218 55609177 L1PA3long 6157 + 8 6157 9013 546 1 2 903 2 1 392 0 1190 3115 chain 2294 chr12 133851895 + 55609226 55609441 L1PA5 6144 - 621 836 51680 215 chain 31247 chr12 133851895 + 55610136 55610488 L1PA2 6032 - 0 352 82086 352 chain 67573 chr12 133851895 + 55618457 55619200 L1PA3long 6157 - 0 745 49235 253 0 1 429 0 1 61 chain 110563 chr12 133851895 + 55619200 55620401 L1PA3long 6157 + 4207 5408 34063 1201 chain 24140 chr12 133851895 + 55636686 55636960 AluY 311 + 27 296 109519 52 4 0 54 1 0 163 chain 25607 chr12 133851895 + 55643540 55643833 L1PA5 6144 - 0 292 101691 60 1 0 232 chain 36423 chr12 133851895 + 55649085 55649536 L1PA8 5853 + 5202 5643 74334 305 11 4 55 1 0 43 2 0 34 chain 73919 chr12 133851895 + 55649768 55650645 MER11D 897 + 0 897 46554 281 2 0 306 0 23 87 1 2 163 3 1 34 chain 110595 chr12 133851895 + 55661841 55663361 THE1B-int 1605 + 0 1600 34052 25 3 0 5 2 4 254 0 54 90 0 25 88 5 8 228 22 18 56 12 13 19 0 1 92 0 1 24 19 18 281 0 1 4 1 0 127 0 1 163 chain 25125 chr12 133851895 + 55663366 55663724 THE1B 368 + 0 368 104152 44 8 23 107 1 0 26 9 1 13 8 12 142 chain 12062 chr12 133851895 + 55671074 55671228 THE1B 368 - 70 223 151939 123 1 0 30 chain 6846 chr12 133851895 + 55679118 55679193 L1PA5 6144 - 7 82 178617 75 chain 151556 chr12 133851895 + 55694735 55696398 L1PA3long 6157 + 4479 6142 24390 1663 chain 404622 chr12 133851895 + 55697751 55702946 L1PA8 5853 + 546 5839 9956 111 0 1 113 9 12 867 1 0 44 0 1 12 4 9 188 0 6 282 1 3 136 0 16 157 4 0 121 7 3 110 24 10 8 0 14 111 0 1 4 27 25 28 3 4 30 0 3 7 8 7 26 7 8 190 1 0 604 6 12 184 0 2 628 6 62 16 0 1 50 0 14 66 20 21 17 1 4 8 2 0 106 0 2 553 1 0 44 2 0 71 29 22 39 2 1 19 1 0 79 chain 64056 chr12 133851895 + 55719058 55719840 LTR17 781 + 0 773 50984 176 0 1 121 10 0 29 0 1 288 1 0 157 chain 27788 chr12 133851895 + 55721659 55722078 LTR8 732 + 39 527 93740 68 11 14 27 17 55 109 9 36 8 0 1 170 chain 75202 chr12 133851895 + 55727214 55728183 LTR5_Hs 974 + 0 974 45920 289 0 1 177 0 1 188 1 0 163 16 22 12 20 18 103 chain 552260 chr12 133851895 + 55738033 55744051 L1PA2 6032 + 0 6025 1164 2568 0 1 914 1 7 2535 chain 509412 chr12 133851895 + 55748726 55755140 L1PA7 6471 + 13 6438 6212 52 1 2 129 21 21 44 11 16 132 51 33 11 0 12 149 1 0 4 2 4 423 0 1 288 7 8 4 1 0 412 0 1 393 0 1 366 0 2 117 1 2 704 0 2 5 7 6 140 1 0 738 0 1 165 3 11 145 1 0 859 1 0 59 0 1 16 3 1 124 18 18 5 1 0 64 1 0 734 chain 12817 chr12 133851895 + 55760082 55760221 L1PA2 6032 + 5886 6025 148989 139 chain 8291 chr12 133851895 + 55765540 55765633 L1PA7 6471 + 6326 6419 169455 93 chain 3736 chr12 133851895 + 55765633 55765678 L1PA7 6471 + 6422 6467 211367 45 chain 36059 chr12 133851895 + 55769365 55769775 L1PA7 6471 - 4 416 74821 153 0 1 181 0 1 76 chain 43154 chr12 133851895 + 55774828 55775371 MER11B 1079 - 512 1079 65226 28 7 27 115 0 1 59 4 21 37 14 0 279 chain 66064 chr12 133851895 + 55781269 55781987 L1PA3long 6157 - 0 718 50069 718 chain 5076 chr12 133851895 + 55795600 55795654 L1PA6 6164 - 4 58 194334 54 chain 223202 chr12 133851895 + 55825875 55828346 L1PA3long 6157 + 3684 6157 17700 1630 0 1 199 0 1 642 chain 84279 chr12 133851895 + 55834760 55835804 MER11B 1079 - 31 1079 41788 17 0 1 153 0 1 107 0 2 99 1 0 173 6 5 162 12 13 8 0 1 306 chain 519219 chr12 133851895 + 55853099 55859240 L1PA6 6164 + 0 6158 5239 787 0 17 818 0 1 8 11 5 546 1 0 143 0 1 39 2 1 20 10 0 12 0 3 390 2 1 176 2 3 72 0 1 145 0 1 330 0 1 9 1 0 255 3 2 514 0 2 69 0 2 278 0 5 640 0 4 684 2 0 5 0 2 117 1 0 49 chain 142980 chr12 133851895 + 55872247 55873902 SVA_D 2077 - 0 2077 25656 654 0 303 49 17 1 15 13 64 37 0 36 14 2 0 47 0 40 611 0 6 176 0 4 20 chain 551708 chr12 133851895 + 55877792 55883818 L1PA2 6032 + 0 6032 1221 2945 0 1 679 0 1 1605 0 1 39 0 3 758 chain 532921 chr12 133851895 + 55898481 55904623 L1PA4 6152 - 1 6142 3863 251 0 1 507 0 1 1146 4 5 301 0 1 1425 1 2 745 3 6 198 11 1 1536 0 1 14 chain 21241 chr12 133851895 + 55910303 55910968 L1M1 2793 + 540 1111 123049 15 2 0 7 4 1 7 1 0 9 1 0 11 144 73 23 156 143 10 1 0 54 11 8 102 8 9 99 chain 22870 chr12 133851895 + 55911419 55911708 THE1A-int 1579 + 0 282 116230 217 7 0 65 chain 121312 chr12 133851895 + 55912117 55913589 L1P1 4361 + 1 1474 30567 662 0 1 179 1 4 9 3 0 618 chain 228988 chr12 133851895 + 55913589 55916115 L1PA3long 6157 + 3628 6157 17359 156 0 1 1366 0 1 231 0 1 773 chain 36190 chr12 133851895 + 55921686 55922731 L1PB1 5432 + 4764 5427 74642 339 479 121 12 1 0 41 7 6 13 14 1 30 6 4 15 0 5 6 8 1 12 1 0 21 1 0 13 1 0 18 2 0 5 chain 56831 chr12 133851895 + 55924818 55925521 L1PA7 6471 + 5469 6180 54640 152 0 3 10 1 0 64 1 3 17 0 3 8 1 2 449 chain 22564 chr12 133851895 + 55925522 55925809 L1PA7 6471 + 6182 6466 117744 277 3 0 7 chain 128740 chr12 133851895 + 55925850 55927617 L1PBa 3878 + 892 2776 28380 92 3 1 6 1 0 8 0 3 37 0 2 50 0 1 165 0 48 15 7 20 112 1 0 162 3 1 608 12 13 146 6 7 107 3 6 24 10 58 66 3 1 49 0 4 13 0 1 58 chain 26633 chr12 133851895 + 55930642 55930937 L1PA3long 6157 + 5859 6157 97547 142 0 3 153 chain 481314 chr12 133851895 + 55933917 55939780 L1PA5 6144 - 4 6144 7679 431 0 1 1477 0 1 1107 243 0 346 0 4 455 0 1 704 0 4 193 7 8 239 24 7 546 0 525 91 chain 17977 chr12 133851895 + 55936948 55937175 L1PA4 6152 - 12 240 132916 137 1 0 5 8 9 26 0 1 50 chain 79277 chr12 133851895 + 55941548 55942510 L1PA6 6164 - 2 974 43923 142 8 0 8 1 9 469 0 1 43 0 2 179 0 7 112 chain 4545 chr12 133851895 + 55948794 55948859 MADE1 96 - 12 93 200284 21 3 19 41 chain 7250 chr12 133851895 + 55952581 55952769 L1M3e 1964 + 38 224 175762 84 84 82 20 chain 525867 chr12 133851895 + 55954211 55960286 L1PA3long 6157 + 1 6155 4595 5 3 0 704 1 8 115 26 9 49 0 1 89 0 1 794 1 94 433 0 1 2047 0 2 1216 5 0 255 1 0 331 chain 120400 chr12 133851895 + 55963115 55964680 THE1B-int 1605 - 5 1605 30905 106 1 0 64 0 4 416 1 2 543 10 36 319 1 4 88 4 6 12 chain 39876 chr12 133851895 + 55969156 55969598 L1PA3long 6157 + 5715 6157 69496 442 chain 126374 chr12 133851895 + 55971660 55973109 L1PA4 6152 - 9 1464 28983 488 1 2 499 0 5 461 chain 173167 chr12 133851895 + 55980580 55983009 L1PB1 5432 + 3041 5404 21696 324 0 1 190 1 2 4 1 0 104 0 1 60 3 5 95 0 4 125 4 0 30 0 1 119 10 0 98 2 0 111 0 1 115 1 0 4 0 2 136 0 1 55 5 0 185 12 0 8 7 19 160 0 1 100 46 16 20 1 0 9 1 0 9 6 2 11 3 1 50 2 1 16 1 0 44 1 0 15 1 0 5 59 45 26 1 0 19 1 0 13 chain 532527 chr12 133851895 + 55983721 55989740 L1PA3long 6157 + 0 6152 3905 153 1 2 613 8 136 651 0 1 125 0 2 51 0 4 79 0 1 484 0 1 715 3 0 501 0 1 768 0 1 131 1 0 1404 1 0 261 2 0 67 chain 529723 chr12 133851895 + 55991876 55997986 L1PA4 6152 + 6 6143 4218 72 0 2 77 12 18 532 1 2 534 0 1 11 0 8 688 0 1 345 0 1 22 7 5 1565 0 2 1301 0 1 110 0 4 222 0 1 122 1 2 243 1 0 211 0 1 33 chain 19218 chr12 133851895 + 55997986 55998296 L1PA13 3608 + 3205 3501 129478 68 2 0 59 11 10 49 8 5 48 8 4 18 1 0 26 3 0 9 chain 124048 chr12 133851895 + 56041535 56042946 SVA_B 1603 - 0 1593 29684 6 2 0 510 0 77 60 0 1 29 1 83 778 1 25 24 chain 26118 chr12 133851895 + 56043268 56043636 THE1C 375 + 0 375 99536 138 1 5 36 27 27 94 0 4 46 1 0 25 chain 17807 chr12 133851895 + 56043636 56043864 THE1C-int 1605 + 0 281 133390 14 3 2 142 0 54 69 chain 55457 chr12 133851895 + 56043875 56044524 PABL_A 660 - 0 660 55432 474 0 2 94 0 9 81 chain 11630 chr12 133851895 + 56046948 56047121 THE1C 375 - 197 375 153776 24 16 0 9 1 21 10 0 1 113 chain 2629 chr12 133851895 + 56057177 56057206 L1M4 1397 - 1349 1378 231283 29 chain 29788 chr12 133851895 + 56059466 56059853 MER51B 395 - 17 395 85519 130 10 9 94 0 5 101 13 0 39 chain 25871 chr12 133851895 + 56060796 56061112 AluY 311 + 2 310 100561 121 3 0 9 0 1 57 0 3 71 8 0 17 1 0 29 chain 14636 chr12 133851895 + 56071466 56071654 L1PA5 6144 + 5955 6144 142470 38 1 3 136 2 1 11 chain 22366 chr12 133851895 + 56083535 56083787 L1PA3long 6157 + 4775 5027 118648 252 chain 103451 chr12 133851895 + 56083787 56084913 L1PA3long 6157 + 5028 6157 35885 844 0 3 282 chain 27655 chr12 133851895 + 56108014 56108320 AluYa5 310 + 0 297 94195 126 6 0 166 3 0 5 chain 7054 chr12 133851895 + 56125471 56125598 MER41C 542 - 166 314 177074 14 30 51 83 chain 12456 chr12 133851895 + 56152515 56152676 MSTA 426 + 256 414 150434 139 3 0 19 chain 22717 chr12 133851895 + 56158037 56158332 AluSp 311 + 11 299 116998 30 29 22 236 chain 6661 chr12 133851895 + 56174466 56174550 MER44B 551 - 187 271 179990 84 chain 24988 chr12 133851895 + 56207323 56207616 AluSp 311 - 7 300 104868 293 chain 10744 chr12 133851895 + 56248844 56248969 L1PA5 6144 + 6013 6138 157223 125 chain 19679 chr12 133851895 + 56256787 56257014 SVA_B 1603 - 416 725 128168 185 0 82 42 chain 28844 chr12 133851895 + 56258294 56258595 AluYa5 310 - 9 310 89696 301 chain 16863 chr12 133851895 + 56265004 56265216 MLT2A1 477 + 224 477 135930 160 0 42 31 1 0 20 chain 20115 chr12 133851895 + 56288426 56290158 Tigger3b 1229 - 502 891 126783 16 0 1 6 3 0 28 2 1 45 0 5 28 1426 78 117 0 3 61 chain 40989 chr12 133851895 + 56304525 56305769 MER4E1 777 - 137 777 67923 90 1 8 35 0 1 50 0 5 171 323 0 27 1 3 35 11 12 38 353 54 10 0 2 99 chain 11620 chr12 133851895 + 56311263 56311405 L1PA16 3655 + 3421 3563 153812 142 chain 2948 chr12 133851895 + 56377170 56377202 Charlie18a 321 - 203 235 226108 32 chain 110036 chr12 133851895 + 56393178 56394492 LTR12C 1709 - 0 1709 34206 84 5 4 79 0 102 212 0 4 99 0 288 256 9 8 102 3 0 5 0 6 460 chain 11890 chr12 133851895 + 56399931 56400076 MER4A1 472 + 1 151 152646 93 0 5 52 chain 26633 chr12 133851895 + 56441289 56441597 AluY 311 + 0 304 97540 123 1 0 3 3 0 178 chain 9992 chr12 133851895 + 56444605 56445164 Tigger3b 1229 - 464 652 160620 37 409 33 26 0 4 40 1 2 46 chain 13587 chr12 133851895 + 56463378 56463640 LTR49-int 1717 - 1299 1553 146028 40 2 1 16 19 8 25 7 14 85 22 20 31 1 0 14 chain 150734 chr12 133851895 + 56468875 56470509 SVA_F 1814 - 0 1814 24511 547 0 37 114 0 78 2 0 49 24 0 15 60 0 1 887 chain 26212 chr12 133851895 + 56479573 56479870 AluY 311 + 2 305 99158 130 0 1 144 0 5 23 chain 21966 chr12 133851895 + 56484133 56484420 AluSc 308 + 0 273 120365 53 18 4 216 chain 10814 chr12 133851895 + 56539757 56539870 AluYa8 305 + 192 305 156925 113 chain 26285 chr12 133851895 + 56580133 56580433 AluSp 311 - 11 311 98881 300 chain 6355 chr12 133851895 + 56584152 56584223 tRNA-Ser-TCG 80 + 5 76 182345 71 chain 23798 chr12 133851895 + 56611056 56611340 AluSx1 309 + 8 291 111490 183 1 0 100 chain 21624 chr12 133851895 + 56656857 56657126 AluSp 311 - 20 290 121681 234 8 9 27 chain 28241 chr12 133851895 + 56660082 56660428 MLT2A2 560 + 190 548 92150 9 0 10 9 1 0 267 0 3 60 chain 21107 chr12 133851895 + 56667823 56668092 AluSp 311 + 8 269 123532 90 10 2 169 chain 20576 chr12 133851895 + 56685848 56686782 LTR10C 591 + 296 589 125374 39 304 0 65 7 1 85 0 2 38 347 14 49 chain 22922 chr12 133851895 + 56691785 56692070 AluSp 311 - 18 300 116005 8 3 0 274 chain 15507 chr12 133851895 + 56706767 56706975 L1PA7 6471 - 3 209 139867 9 2 0 143 2 0 6 12 14 34 chain 23632 chr12 133851895 + 56714140 56714436 AluSq2 311 + 1 292 112409 121 11 6 164 chain 29672 chr12 133851895 + 56724132 56724442 AluYa5 310 - 0 310 85948 310 chain 4063 chr12 133851895 + 56746186 56746234 U7 62 - 14 62 206429 48 chain 12242 chr12 133851895 + 56763528 56763673 L1PA4 6152 + 5992 6138 151243 16 0 1 129 chain 6750 chr12 133851895 + 56780522 56780607 MSTB1 431 - 13 97 179320 18 1 0 66 chain 434954 chr12 133851895 + 56792310 56798535 HERVL-int 5654 + 302 5654 9196 331 0 1 100 0 2 116 3 0 14 0 5 1034 0 2 217 996 4 156 0 1 387 0 2 168 0 52 955 1 0 39 0 41 33 1 4 314 0 4 429 0 2 39 1 0 96 5 6 43 1 4 261 12 13 184 0 3 70 0 1 219 chain 75411 chr12 133851895 + 56794148 56795109 LTR5_Hs 974 - 4 974 45816 99 20 18 19 8 15 163 1 0 188 0 1 177 0 1 236 0 3 50 chain 29422 chr12 133851895 + 56798535 56798929 MLT2A1 477 + 0 400 86979 138 0 1 25 5 9 151 1 0 47 11 13 16 chain 12092 chr12 133851895 + 56798965 56799123 HERVL-int 5654 - 27 186 151829 131 0 2 22 1 0 4 chain 2729 chr12 133851895 + 56800775 56800812 MER52-int 3354 - 3152 3189 229751 25 1 0 5 0 1 6 chain 23864 chr12 133851895 + 56831399 56831785 MER51D 577 + 50 451 111113 22 6 1 6 1 0 4 1 0 10 19 11 183 10 27 23 1 0 33 0 14 67 chain 25440 chr12 133851895 + 56853900 56854204 AluY 311 + 2 308 102493 35 0 1 94 0 1 175 chain 24991 chr12 133851895 + 56861662 56861947 AluSc5 308 - 23 308 104853 285 chain 132696 chr12 133851895 + 56886978 56888928 SVA_A 1864 - 0 1627 27479 313 1 2 89 0 2 21 0 4 260 1 0 4 1 2 23 1 0 35 15 12 151 215 0 60 91 0 123 17 0 74 3 0 72 7 5 33 0 2 41 1 4 23 3 0 272 chain 2880 chr12 133851895 + 56887929 56888020 SVA_A 1864 - 719 807 77983 11 3 0 77 chain 1465 chr12 133851895 + 56888077 56888106 SVA_A 1864 - 1069 1098 105576 29 chain 2923 chr12 133851895 + 56888198 56888259 SVA_A 1864 - 1123 1165 78253 21 20 1 20 chain 87467 chr12 133851895 + 56890353 56891369 LTR13 1007 + 0 1007 40576 380 1 2 43 10 1 4 1 0 577 chain 87718 chr12 133851895 + 56894490 56895500 LTR13 1007 - 0 999 40478 577 16 1 273 0 4 144 chain 26471 chr12 133851895 + 56951510 56951820 AluSp 311 - 0 309 98162 249 1 0 60 chain 13397 chr12 133851895 + 56958824 56958998 MER2 342 - 89 262 146732 49 1 0 26 1 0 68 0 1 29 chain 3935 chr12 133851895 + 56976311 56976357 MER5A 189 + 0 46 208336 46 chain 8356 chr12 133851895 + 56982301 56982403 U6 107 + 0 105 169093 53 0 3 49 chain 27492 chr12 133851895 + 57019391 57019681 AluYg6 310 + 12 302 94674 290 chain 57179 chr12 133851895 + 57045559 57046233 SVA_B 1603 - 759 1603 54418 507 0 144 129 1 25 24 0 1 4 0 1 9 chain 81250 chr12 133851895 + 57047189 57048264 MER11B 1079 + 0 1079 43063 47 0 3 175 0 5 121 6 9 67 2 1 313 10 0 26 0 2 51 5 6 41 0 1 16 4 5 161 1 0 29 chain 14358 chr12 133851895 + 57048595 57048773 MER1A 529 + 199 377 143349 178 chain 4130 chr12 133851895 + 57048798 57048845 MER1B 344 + 286 333 205496 47 chain 7298 chr12 133851895 + 57098473 57098561 MER41A 554 - 301 389 175462 88 chain 14385 chr12 133851895 + 57099537 57099726 MER41-int 2638 - 58 248 143256 161 10 11 18 chain 4200 chr12 133851895 + 57107999 57108079 L1PB1 5432 + 5353 5427 204533 20 1 0 18 6 5 8 2 0 18 2 0 5 chain 14456 chr12 133851895 + 57138300 57138516 Tigger3a 397 + 56 322 143032 14 23 72 94 0 1 85 chain 10686 chr12 133851895 + 57150161 57150286 MER75 514 - 21 146 157468 125 chain 10373 chr12 133851895 + 57154871 57154998 L1MB7 1623 + 1052 1179 158815 127 chain 27461 chr12 133851895 + 57159675 57160092 LTR7Y 441 + 0 434 94775 160 65 81 82 0 1 110 chain 4823 chr12 133851895 + 57168748 57168802 MER2 342 - 206 260 197094 54 chain 14827 chr12 133851895 + 57169446 57170085 L1MC2 1988 - 111 459 141852 30 1 0 3 3 0 35 49 50 48 32 41 50 0 1 22 319 21 47 chain 30435 chr12 133851895 + 57174015 57174359 LTR10C 591 + 0 344 83568 344 chain 169735 chr12 133851895 + 57176446 57178514 SVA_D 2077 - 0 2076 22083 136 0 20 453 0 4 54 18 17 4 0 1 207 0 1 8 60 37 4 0 1 44 20 70 29 1 0 39 45 5 26 2 1 891 3 0 24 chain 2688 chr12 133851895 + 57177326 57177386 SVA_D 2077 - 982 1092 163524 2 2 0 22 4 55 13 0 1 17 chain 3823 chr12 133851895 + 57177523 57177568 SVA_D 2077 - 775 820 133772 45 chain 172044 chr12 133851895 + 57182240 57184386 SVA_D 2077 - 2 2071 21810 16 3 0 592 0 4 53 18 17 4 0 1 207 0 1 8 12 37 4 0 1 82 52 0 10 0 1 50 1 0 7 78 0 31 1 0 6 8 0 26 2 1 8 1 0 269 0 40 563 4 0 30 chain 4105 chr12 133851895 + 57183239 57183291 SVA_D 2077 - 1129 1165 80775 1 11 0 31 6 1 3 chain 5220 chr12 133851895 + 57183359 57183437 SVA_D 2077 - 743 821 112445 8 0 1 4 1 0 65 chain 132233 chr12 133851895 + 57188639 57190188 LTR12C 1709 - 0 1709 27580 481 0 4 107 3 1 5 1 0 115 0 159 523 1 0 4 0 1 309 chain 115012 chr12 133851895 + 57192203 57193652 L1PA8 5853 + 4411 5853 32791 159 1 2 62 12 0 66 3 4 292 8 0 10 5 9 174 0 3 153 0 5 35 0 2 138 0 3 36 1 0 47 2 0 67 2 1 56 7 6 19 3 2 91 chain 90017 chr12 133851895 + 57215891 57216919 LTR5A 1029 + 0 1029 39642 147 1 0 542 0 2 338 chain 21556 chr12 133851895 + 57222846 57223229 L1PREC2 3366 + 2588 2948 121941 165 2 0 46 9 8 17 1 0 26 1 0 3 3 0 12 31 23 12 2 0 6 3 0 15 7 5 22 chain 12974 chr12 133851895 + 57228359 57228535 MER30 238 - 0 199 148335 39 0 3 72 2 0 5 1 23 57 chain 138179 chr12 133851895 + 57238656 57240257 L1PA6 6164 + 4544 6156 26459 652 0 7 115 0 4 78 1 0 4 0 1 751 chain 77548 chr12 133851895 + 57246525 57247928 MER11A 1151 + 0 1151 44714 108 0 2 33 0 93 56 13 9 139 322 9 89 0 1 141 5 7 36 0 1 107 50 33 20 18 0 36 0 1 230 chain 31839 chr12 133851895 + 57252714 57253152 MLT2A1 477 + 0 477 81108 86 9 15 67 9 6 211 3 35 47 0 4 6 chain 7367 chr12 133851895 + 57257263 57257398 MSTA 426 + 5 164 174998 80 35 59 20 chain 5625 chr12 133851895 + 57259246 57259314 MER101B 537 - 469 537 188833 68 chain 40336 chr12 133851895 + 57266569 57267067 MER9a3 513 - 0 498 68825 77 1 2 150 1 0 26 1 0 146 0 1 96 chain 33883 chr12 133851895 + 57269437 57269880 MER4A1 472 + 0 471 77803 15 0 2 23 0 5 181 5 26 219 chain 46019 chr12 133851895 + 57271681 57272314 LTR76 689 - 16 682 62027 22 5 4 42 0 3 220 11 19 194 10 30 90 0 3 39 chain 120029 chr12 133851895 + 57272548 57274017 SVA_B 1603 + 44 1603 31047 20 5 10 571 41 1 51 0 40 88 0 3 10 0 82 15 7 8 4 0 1 21 2 0 634 chain 469512 chr12 133851895 + 57282145 57287839 L1PA5 6144 + 492 6143 8052 136 3 1 284 8 12 27 25 0 210 16 7 56 0 2 953 19 19 99 1 2 5 1 0 8 24 2 848 0 1 115 0 1 137 0 1 84 1 0 372 0 1 75 0 2 441 0 1 1178 0 2 427 0 1 141 chain 27465 chr12 133851895 + 57291247 57291617 L1PA8 5853 + 5483 5847 94758 81 1 0 46 2 0 69 2 1 60 2 1 16 5 4 86 chain 15332 chr12 133851895 + 57293463 57293665 L1PA16 3655 - 115 318 140388 53 5 6 144 chain 59839 chr12 133851895 + 57298543 57299639 L1PA8A 6298 + 5496 6289 52908 144 337 28 336 0 3 139 0 2 28 0 1 7 5 4 42 1 2 57 chain 77113 chr12 133851895 + 57302810 57303839 THE1C-int 1605 + 384 1587 44912 61 0 7 222 0 1 40 29 39 7 9 0 263 0 12 114 2 3 138 0 152 144 chain 40167 chr12 133851895 + 57306795 57307238 L1PA4 6152 - 436 879 69083 443 chain 39524 chr12 133851895 + 57307245 57307688 L1PA4 6152 + 5697 6141 69991 341 0 1 102 chain 106832 chr12 133851895 + 57312142 57313331 L1PA4 6152 + 4962 6151 35028 1189 chain 25100 chr12 133851895 + 57313335 57313678 L1PA8 5853 + 5517 5853 104291 47 1 0 44 2 0 69 3 2 9 9 8 44 2 1 19 1 0 93 chain 412957 chr12 133851895 + 57352046 57359775 L1P2 5180 + 14 5052 9722 136 1 0 44 1 0 53 4 3 265 1 0 268 22 20 93 0 4 38 0 1 235 4 5 63 1 0 212 0 1 871 9 0 203 0 3 606 0 5 88 1 0 459 2 0 399 0 1 161 0 2 255 0 1 43 2691 0 113 1 0 225 0 1 161 chain 147402 chr12 133851895 + 57356596 57359056 SVA_D 2077 + 0 2064 24978 817 40 0 91 0 136 9 0 1 49 0 205 44 0 49 328 0 10 126 766 9 190 chain 67229 chr12 133851895 + 57358100 57358836 L1HS 6032 + 5295 6031 49555 365 0 1 355 1 0 15 chain 524287 chr12 133851895 + 57359784 57368549 L1PA5 6144 + 3 6144 4743 1036 2311 0 132 10 0 235 0 4 388 0 1 515 0 1 430 0 1 1024 4 9 1492 2 1 120 0 3 27 0 1 33 318 0 688 chain 125548 chr12 133851895 + 57360855 57362361 HERV17-int 4347 - 2725 4235 29228 150 1 2 265 1 3 390 1 0 160 0 1 15 0 1 13 5 6 54 1 0 122 0 1 300 1 0 27 chain 62700 chr12 133851895 + 57370518 57371666 L1PA8 5853 + 5033 5848 51590 439 327 0 84 11 10 44 2 0 67 4 3 8 1 0 38 0 1 13 2 1 19 1 0 88 chain 24251 chr12 133851895 + 57371704 57372448 L1M1 2793 - 1625 2266 108936 165 1 0 18 0 2 62 31 28 54 1 0 6 7 5 15 301 215 8 3 0 11 32 25 14 1 0 7 1 0 6 chain 5276 chr12 133851895 + 57446714 57446778 MER5A1 166 + 96 160 192251 64 chain 64787 chr12 133851895 + 57446811 57447546 L1PA4 6152 - 11 750 50662 41 0 4 694 chain 35451 chr12 133851895 + 57447546 57447955 L1PA4 6152 + 4992 5399 75619 384 3 1 22 chain 13779 chr12 133851895 + 57466944 57467112 AluYk4 311 - 15 193 145336 20 0 2 97 0 5 46 0 3 5 chain 23162 chr12 133851895 + 57483982 57484262 AluSg 306 + 0 283 114842 9 4 0 217 2 9 48 chain 10114 chr12 133851895 + 57571719 57571835 AluYf4 310 - 0 114 160019 46 2 0 68 chain 117670 chr12 133851895 + 57668521 57670383 L1PB1 5432 + 3737 5279 31902 215 5 4 396 1 3 19 3 1 112 29 25 109 0 1 212 6 7 80 305 0 125 0 1 5 1 0 51 13 11 24 1 0 9 16 11 9 2 0 53 3 2 15 1 0 42 chain 24212 chr12 133851895 + 57680382 57680679 AluSp 311 + 0 293 109139 91 0 3 189 7 0 10 chain 5583 chr12 133851895 + 57722628 57722728 Tigger1 2417 + 2287 2392 189250 35 5 6 35 8 12 17 chain 7319 chr12 133851895 + 57723596 57723719 L1M3 994 - 721 847 175306 11 1 5 16 5 0 51 0 5 14 1 0 24 chain 5770 chr12 133851895 + 57749380 57749460 L1ME1 1623 - 1158 1237 187440 41 1 0 38 chain 5852 chr12 133851895 + 57757234 57757305 L1MA5A 2387 + 2230 2300 186668 66 1 0 4 chain 24034 chr12 133851895 + 57764142 57764447 AluSp 311 + 11 306 110142 37 9 0 8 2 1 249 chain 5029 chr12 133851895 + 57764447 57764516 THE1D 372 + 304 372 194841 7 0 1 4 1 0 24 1 0 32 chain 24019 chr12 133851895 + 57768190 57768493 AluSq2 311 + 0 311 110220 46 9 17 248 chain 24395 chr12 133851895 + 57769458 57769744 AluSc5 308 - 13 298 108106 165 1 0 120 chain 8191 chr12 133851895 + 57770764 57770861 LTR12C 1709 + 1290 1387 170000 97 chain 100191 chr12 133851895 + 57779912 57781273 LTR12C 1709 + 0 1707 36721 277 4 0 2 0 13 10 8 0 36 0 43 269 0 119 68 1 0 126 22 23 42 0 41 17 18 42 68 14 32 211 0 101 79 7 6 82 chain 29985 chr12 133851895 + 57782098 57782546 MER83 447 - 18 447 84857 13 15 12 45 4 0 76 2 0 7 4 0 51 12 0 136 8 14 75 chain 50768 chr12 133851895 + 57793798 57794370 L1PA5 6144 + 5567 6138 58452 244 2 1 326 chain 4932 chr12 133851895 + 57794986 57795281 MLT1H 522 + 100 394 195906 43 40 42 20 169 166 23 chain 6133 chr12 133851895 + 57845737 57845845 MER96B 391 + 75 186 184148 11 4 8 13 2 0 7 1 2 70 chain 25091 chr12 133851895 + 57873969 57874264 AluSq10 312 - 17 312 104345 295 chain 131308 chr12 133851895 + 57888289 57889814 SVA_B 1603 - 0 1601 27799 588 1 0 66 0 1 65 4 0 24 1 0 7 1 0 13 5 45 18 0 37 695 1 8 16 8 6 12 chain 161577 chr12 133851895 + 57900634 57902496 SVA_D 2077 - 0 2077 23116 19 1 0 616 0 95 122 5 6 38 17 46 4 0 1 32 5 6 43 0 52 4 0 1 41 0 37 154 3 0 32 0 3 721 1 0 4 chain 12574 chr12 133851895 + 57950659 57950808 MLT2A2 560 - 411 560 149946 149 chain 18743 chr12 133851895 + 57950810 57951043 HERVL-int 5654 - 2 234 130842 48 0 1 39 2 0 77 0 1 62 1 0 4 chain 78265 chr12 133851895 + 57982659 57983624 LTR13A 966 - 0 966 44388 111 1 2 86 0 1 14 11 10 135 0 2 219 1 0 291 11 10 85 chain 7219 chr12 133851895 + 58021102 58021181 L1PA5 6144 + 6060 6139 175945 79 chain 3174 chr12 133851895 + 58031429 58031554 MER2 342 + 58 215 221437 11 0 2 9 54 81 23 7 10 21 chain 34445 chr12 133851895 + 58034458 58034909 MER4A1 472 + 0 472 77003 24 2 1 205 4 25 77 1 0 10 0 2 128 chain 25706 chr12 133851895 + 58035847 58036611 LTR9 672 + 0 500 101263 70 46 42 140 10 12 11 0 1 4 9 5 43 326 70 28 1 0 44 2 0 30 chain 554454 chr12 133851895 + 58040262 58046281 L1PA2 6032 + 1 6031 888 156 0 11 5863 chain 187586 chr12 133851895 + 58046282 58049377 MER4-int 2692 + 86 2570 20283 13 2 0 7 15 19 414 0 9 166 17 12 32 1 0 81 0 1 5 305 0 78 0 1 151 0 5 106 7 10 281 1 6 27 5 0 270 1 0 370 330 1 62 27 34 35 1 2 214 0 1 71 chain 3393 chr12 133851895 + 58050048 58050090 LTR12C 1709 + 932 974 217244 42 chain 7480 chr12 133851895 + 58050135 58050341 LTR12C 1709 + 819 1065 174274 18 1 0 36 105 146 46 chain 148204 chr12 133851895 + 58056592 58060694 MER57-int 2662 + 526 2660 24856 127 0 1 25 0 7 184 0 8 115 0 1 109 0 4 239 1 0 20 0 2 231 0 1 2 0 15 292 3 0 62 0 2 84 20 22 5 3 0 98 1972 0 138 16 13 58 17 21 12 18 12 68 73 55 23 1 0 7 20 15 21 3 0 35 chain 140217 chr12 133851895 + 58058271 58060126 SVA_A 1864 + 18 1864 26111 507 13 16 72 3 0 114 2 0 37 38 0 38 3 0 33 4 1 49 1 0 102 2 0 33 54 14 60 7 5 45 1 0 55 45 128 537 chain 2767 chr12 133851895 + 58059019 58059057 SVA_A 1864 + 1024 1206 77221 32 5 149 1 chain 2615 chr12 133851895 + 58059326 58059360 SVA_A 1864 + 613 647 223394 34 chain 28333 chr12 133851895 + 58061107 58061480 MER4A1 472 + 73 472 91826 4 1 0 34 0 2 117 11 32 36 3 6 19 0 1 148 chain 24029 chr12 133851895 + 58066575 58066926 MLT2A2 560 - 194 553 110169 148 40 43 137 0 5 26 chain 97054 chr12 133851895 + 58077477 58078889 L1PB2 3958 - 120 1535 37548 60 5 4 16 3 24 16 1 0 36 2 1 22 0 1 41 1 0 77 2 1 88 4 0 11 4 23 39 42 3 11 2 1 56 2 0 86 7 20 275 4 3 301 18 20 31 8 5 82 1 2 19 0 1 39 chain 5382 chr12 133851895 + 58078914 58078981 L1PB2 3958 + 2308 2375 191168 27 1 0 4 0 1 35 chain 9162 chr12 133851895 + 58080349 58080466 L1PB4 2604 + 708 823 164752 47 2 0 68 chain 89751 chr12 133851895 + 58084190 58085794 L1MA2 4263 - 161 1433 39738 46 11 0 21 0 1 4 4 6 59 15 13 143 3 0 147 2 1 76 5 1 17 5 8 100 0 4 84 0 2 10 0 1 70 324 0 199 19 21 143 19 17 78 chain 25625 chr12 133851895 + 58122660 58122987 AluY 311 + 0 311 101602 19 16 0 292 chain 8089 chr12 133851895 + 58199946 58200043 U6 107 - 10 107 170544 97 chain 2707 chr12 133851895 + 58242733 58242766 MIRc 230 - 22 56 230140 29 0 1 4 chain 29967 chr12 133851895 + 58249387 58249808 LTR7B 505 + 0 495 84922 108 0 10 57 0 38 12 0 25 5 2 1 22 1 3 23 0 1 58 1 0 23 0 1 54 14 13 41 chain 2934 chr12 133851895 + 58285329 58285394 L1MB3 1562 - 7 71 226429 27 10 9 11 3 0 6 0 3 8 chain 3233 chr12 133851895 + 58313788 58313825 MLT1L 557 - 157 194 220371 37 chain 17166 chr12 133851895 + 58313972 58314183 L1PA8A 6298 - 7 214 135122 39 4 0 168 chain 25184 chr12 133851895 + 58318311 58318673 THE1D 372 - 0 372 103830 31 1 0 33 0 1 68 8 7 38 15 25 6 0 1 162 chain 13152 chr12 133851895 + 58333417 58333656 L1PB4 2604 + 2332 2572 147635 14 12 16 15 14 11 23 1 2 139 6 5 15 chain 23102 chr12 133851895 + 58340229 58340536 AluSp 311 - 5 309 115133 43 5 1 108 11 13 34 2 1 104 chain 412417 chr12 133851895 + 58352235 58357691 L1PB1 5432 + 19 5420 9736 27 9 8 204 0 1 130 4 3 14 1 0 482 1 0 346 1 0 62 1 0 35 5 0 64 1 0 7 8 1 213 1 0 4 0 1 222 0 2 448 0 1 157 0 1 37 12 0 705 0 2 112 11 8 404 3 1 15 1 5 41 0 1 51 0 2 271 4 0 93 0 3 182 0 3 138 0 2 95 1 2 178 3 6 6 3 0 61 8 4 222 0 1 14 3 0 21 1 0 9 16 11 11 3 1 50 2 1 16 1 0 38 6 5 15 3 0 8 15 5 16 30 25 21 1 0 21 1 0 13 1 0 16 chain 70086 chr12 133851895 + 58364782 58365540 L1PA3long 6157 + 5399 6157 48357 758 chain 16332 chr12 133851895 + 58371820 58372045 7SK 245 - 6 233 137394 66 2 0 39 18 22 100 chain 196560 chr12 133851895 + 58372045 58374504 L1PA7 6471 + 4115 6465 19461 126 9 5 240 107 3 582 11 0 141 0 1 330 1 0 77 1 4 645 9 14 173 0 2 7 chain 45006 chr12 133851895 + 58380044 58380622 L1PA8 5853 + 5281 5853 63052 281 1 0 46 3 1 73 1 0 58 2 1 19 1 0 93 chain 36147 chr12 133851895 + 58395548 58395978 L1PA7 6471 - 2 430 74711 338 2 0 90 chain 497985 chr12 133851895 + 58410953 58417068 L1PA6 6164 - 21 6164 6956 139 3 4 453 0 1 7 0 2 229 1 0 807 0 1 30 0 1 58 0 1 38 0 4 149 0 4 73 0 1 78 0 1 47 0 3 74 4 1 117 0 1 121 0 2 174 0 1 277 5 8 46 0 1 379 8 6 476 4 5 108 0 2 63 1 0 148 0 1 628 8 9 424 0 4 106 15 32 348 19 0 450 chain 43858 chr12 133851895 + 58417163 58417665 L1PA5 6144 + 5641 6143 64376 502 chain 22363 chr12 133851895 + 58418643 58418985 THE1B 368 - 11 368 118659 98 30 31 14 0 1 4 10 11 26 1 0 64 2 0 48 1 16 44 chain 7752 chr12 133851895 + 58424243 58424352 MLT1E3 631 + 58 180 172596 93 4 17 12 chain 3049 chr12 133851895 + 58426365 58426400 THE1D-int 1627 - 14 49 224021 35 chain 21044 chr12 133851895 + 58430977 58431211 L1PA4 6152 - 9 243 123755 234 chain 33210 chr12 133851895 + 58431445 58431858 L1PA5 6144 + 5731 6144 78862 258 1 8 9 7 0 138 chain 28607 chr12 133851895 + 58433481 58433820 L1PA5 6144 - 4 343 90706 107 0 1 147 1 0 84 chain 79344 chr12 133851895 + 58445606 58447433 L1PA5 6144 + 3 1830 4238 1827 chain 538959 chr12 133851895 + 58447456 58453480 L1PA3long 6157 - 1 6156 3000 2284 0 2 606 0 2 332 0 1 2025 4 132 616 7 8 140 3 0 7 chain 187220 chr12 133851895 + 58453489 58457800 L1PA5 6144 + 1830 6143 4238 881 1 0 3188 0 1 52 0 1 28 1 6 5 4 0 151 chain 14293 chr12 133851895 + 58468403 58468761 L1PA7 6471 - 12 371 64210 327 0 1 31 chain 48878 chr12 133851895 + 58468800 58469335 L1PA3long 6157 - 2 537 59824 535 chain 6707 chr12 133851895 + 58469337 58469505 L1PA7 6471 - 377 540 64210 9 5 0 154 chain 2410 chr12 133851895 + 58484464 58484766 MLT1B 390 + 16 334 177414 7 2 0 30 214 232 49 chain 31376 chr12 133851895 + 58484844 58485304 MER1A 529 - 71 529 81860 5 3 0 356 31 38 17 5 1 30 2 0 11 chain 303 chr12 133851895 + 58485304 58485342 MLT1B 390 + 334 373 177414 12 0 1 26 chain 2382 chr12 133851895 + 58491964 58492008 MER21C 908 - 749 794 234382 24 6 7 14 chain 546973 chr12 133851895 + 58503043 58509089 L1PA2 6032 - 0 6027 1834 15 0 3 177 3 1 266 24 1 1339 0 4 3970 1 0 251 chain 18585 chr12 133851895 + 58512043 58512253 L1PA7 6471 - 6 215 131271 136 1 0 73 chain 24730 chr12 133851895 + 58516349 58516649 AluSp 311 - 9 311 106274 154 0 5 11 3 0 132 chain 128217 chr12 133851895 + 58518119 58519709 L1PA8 5853 - 6 1603 28519 87 1 0 17 4 3 35 6 7 5 2 0 14 2 1 68 2 0 46 1 0 541 0 1 12 1 3 485 4 0 69 0 1 5 11 26 43 7 8 30 2 0 90 chain 28444 chr12 133851895 + 58521150 58521453 AluYf4 310 + 0 303 91402 303 chain 47362 chr12 133851895 + 58523288 58523847 L1PA7 6471 - 1 560 60922 559 chain 124729 chr12 133851895 + 58529809 58531501 L1PA8 5853 - 1 1719 29469 22 0 1 62 1 0 6 6 5 12 1 0 19 9 10 20 5 10 6 1 0 69 2 0 46 1 0 35 6 5 8 0 1 18 0 7 320 18 9 52 23 42 60 0 3 160 0 1 490 0 1 5 2 1 6 1 0 65 0 6 135 chain 121274 chr12 133851895 + 58539089 58540778 L1PREC2 3366 - 723 2750 30612 46 6 5 147 0 1 129 1 0 29 0 2 479 90 424 15 0 2 28 0 4 16 13 12 171 3 0 213 0 1 303 chain 26751 chr12 133851895 + 58559405 58559735 THE1D-int 1627 + 1264 1621 97161 163 1 0 136 0 27 6 0 1 24 chain 3589 chr12 133851895 + 58607631 58607675 MADE1 96 + 50 94 213835 44 chain 30194 chr12 133851895 + 58612365 58612679 AluYb8 318 + 0 314 84214 314 chain 540660 chr12 133851895 + 58620732 58626870 L1PA4 6152 - 9 6152 2715 404 1 2 1983 0 1 236 4 1 270 1 3 876 1 4 2174 0 1 188 chain 7392 chr12 133851895 + 58638977 58639068 LTR47A 437 + 347 437 174818 50 1 0 40 chain 26216 chr12 133851895 + 58651031 58651391 L1PA8 5853 - 0 356 99136 7 4 0 86 1 0 19 2 1 51 1 0 7 1 0 73 2 0 25 17 23 64 chain 102338 chr12 133851895 + 58670547 58671984 THE1B-int 1605 + 1 1491 36185 205 0 28 196 38 21 67 0 1 169 8 9 46 5 14 67 0 1 26 12 9 213 8 23 96 10 25 20 4 7 247 chain 85716 chr12 133851895 + 58675649 58676598 L1PA5 6144 - 4 954 41263 835 0 1 114 chain 123897 chr12 133851895 + 58711755 58713323 THE1B-int 1605 - 5 1605 29732 846 3 5 136 0 1 148 6 32 129 1 2 12 1 0 173 0 3 113 chain 25541 chr12 133851895 + 58713323 58713683 THE1B 368 - 0 368 102049 37 17 25 112 0 2 24 1 0 58 3 2 108 chain 3644 chr12 133851895 + 58715183 58715223 MADE1 96 - 54 94 212899 40 chain 76601 chr12 133851895 + 58721241 58722209 LTR5_Hs 974 - 0 974 45161 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 558267 chr12 133851895 + 58722989 58729730 HERVK-int 6823 - 241 6823 477 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 172 101 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 6 2 0 76 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 2 1 100 1 0 22 1 0 175 0 3 19 1 0 10 4 3 1627 0 1 87 0 10 160 0 1 1794 1 0 7 2 0 372 1 0 439 1 0 310 1 0 21 1 0 26 2 0 205 1 0 305 12 0 17 15 12 21 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 75899 chr12 133851895 + 58729730 58730698 LTR5_Hs 974 - 0 974 45548 103 23 21 16 8 15 163 1 0 188 0 1 177 0 1 289 chain 22909 chr12 133851895 + 58731260 58731633 THE1C 375 + 0 375 116068 104 13 12 24 5 6 22 42 45 136 1 0 26 chain 77979 chr12 133851895 + 58806719 58807785 MER41-int 2638 - 2 1062 44523 128 0 2 6 3 1 46 0 8 96 11 10 143 2 0 94 12 1 13 0 7 53 11 7 102 2 1 67 1 0 181 1 0 94 chain 464751 chr12 133851895 + 58820014 58825615 L1PA7 6471 + 666 6466 8230 417 2 0 127 0 4 387 0 1 58 0 1 393 0 2 12 0 1 102 1 0 126 3 0 344 14 10 44 0 1 193 5 9 177 0 1 290 0 22 308 0 1 36 2 1 97 1 2 444 0 2 74 0 4 119 0 1 341 0 4 802 3 165 319 0 10 82 12 2 118 1 0 109 1 0 37 chain 23222 chr12 133851895 + 58845424 58846174 L1PB1 5432 - 8 1093 114588 4 1 0 16 1 0 8 2 5 21 1 0 24 2 0 5 17 14 19 24 12 16 1 0 43 1 0 16 3 1 51 2 0 12 19 14 5 1 0 24 1 0 9 286 651 115 chain 554451 chr12 133851895 + 58865189 58871337 L1PA3long 6157 - 0 6153 889 896 2 0 639 0 1 923 1 3 1296 0 1 40 0 1 644 0 1 1404 0 1 303 chain 50752 chr12 133851895 + 58887826 58888385 L1PA2 6032 - 1 558 58461 12 2 0 545 chain 20199 chr12 133851895 + 58904751 58905052 THE1B 368 + 0 356 126529 39 0 47 86 1 0 26 35 45 75 1 0 38 chain 73969 chr12 133851895 + 58936944 58937905 LTR5_Hs 974 - 0 974 46532 80 1 0 41 0 1 69 7 7 97 3 5 17 0 1 21 10 9 164 0 4 155 8 13 252 0 2 36 chain 35748 chr12 133851895 + 58959221 58959657 L1PA7 6471 - 10 448 75202 145 8 9 175 0 1 108 chain 23290 chr12 133851895 + 58974841 58975131 AluSc5 308 + 19 307 114259 283 2 0 5 chain 3476 chr12 133851895 + 58979426 58979467 Tigger4a 237 - 48 89 215719 41 chain 9113 chr12 133851895 + 58988727 58988856 L1PA8 5853 + 5717 5853 165000 23 2 1 19 6 14 79 chain 34663 chr12 133851895 + 58998582 58998997 L1PA7 6471 + 6051 6465 76670 270 3 1 75 0 1 67 chain 24189 chr12 133851895 + 59006121 59006406 AluY 311 + 16 301 109278 285 chain 107955 chr12 133851895 + 59047173 59048613 THE1A-int 1579 - 5 1453 34731 105 0 2 122 12 14 168 20 21 130 0 1 44 12 8 59 0 10 144 0 1 240 0 2 5 16 2 193 0 1 117 1 7 52 chain 16629 chr12 133851895 + 59048664 59048878 THE1A 353 - 141 353 136586 10 1 0 92 1 0 110 chain 14490 chr12 133851895 + 59053946 59054125 L1PA7 6471 - 3 181 142914 142 6 5 31 chain 29458 chr12 133851895 + 59058248 59058558 AluYa5 310 - 0 310 86810 310 chain 23299 chr12 133851895 + 59059990 59060278 L1PA8 5853 + 5564 5847 114204 44 2 0 74 1 0 58 2 1 19 1 0 87 chain 85191 chr12 133851895 + 59071016 59071955 L1PA4 6152 - 1 940 41455 939 chain 72528 chr12 133851895 + 59088680 59089736 MER11A 1151 + 0 1151 47254 79 0 8 143 1 0 26 0 1 37 0 11 227 0 12 127 17 20 11 3 4 29 8 12 47 16 42 4 0 1 18 2 34 92 14 13 86 8 7 21 1 0 39 chain 2386 chr12 133851895 + 59089746 59089798 L1PA15 4387 + 4087 4137 234340 12 11 10 22 1 0 6 chain 137138 chr12 133851895 + 59095118 59096858 L1P2 5180 + 2 1758 26612 148 2 1 44 6 5 47 14 13 127 18 22 36 1 2 14 1 0 54 1 0 242 1 0 30 0 15 246 0 1 23 0 1 685 chain 507761 chr12 133851895 + 59098137 59104285 L1PA6 6164 - 18 6164 6346 408 0 2 247 7 8 12 0 1 153 1 0 18 0 1 610 8 7 30 2 0 726 1 8 93 0 1 631 0 1 259 0 4 592 26 0 1143 0 3 133 0 1 70 6 7 464 24 23 13 11 10 61 19 18 9 0 8 371 chain 12876 chr12 133851895 + 59109363 59109519 L1PA5 6144 - 12 168 148720 14 0 1 122 1 0 19 chain 80624 chr12 133851895 + 59141798 59142761 L1PA6 6164 - 3 991 43333 150 0 1 17 1 18 155 0 1 311 0 5 106 5 6 218 chain 33257 chr12 133851895 + 59153326 59153830 L1PA15 4387 - 240 739 78792 17 1 0 26 23 22 70 3 4 76 1 0 38 6 4 11 0 4 48 3 0 15 8 6 158 chain 5413 chr12 133851895 + 59162415 59162476 L1PA13 3608 - 2552 2613 190865 61 chain 32268 chr12 133851895 + 59173418 59173816 L1PA7 6471 - 1 401 80410 12 0 1 158 1 2 227 chain 56290 chr12 133851895 + 59176346 59177637 L1PB 1623 + 729 1452 54967 58 1 0 89 565 0 60 5 7 7 2 0 355 1 0 141 1 0 6 chain 44925 chr12 133851895 + 59176498 59177034 MLT2A2 560 + 0 536 63145 536 chain 7567 chr12 133851895 + 59181172 59181268 Tigger4 2445 + 240 336 173754 96 chain 13862 chr12 133851895 + 59181294 59181506 L1PA17 2846 - 505 720 145028 55 10 12 46 1 0 41 7 9 52 chain 201640 chr12 133851895 + 59191880 59194482 L1PA8 5853 - 0 2599 19097 7 5 0 86 1 0 19 2 1 29 35 33 70 2 0 6 0 1 37 1 0 269 0 1 27 0 10 176 17 11 59 3 1 353 1 2 278 7 8 35 2 0 424 0 2 79 7 14 186 6 7 11 4 0 302 1 0 55 chain 23173 chr12 133851895 + 59209421 59209729 AluSp 311 + 8 299 114797 116 16 4 17 5 0 154 chain 4556 chr12 133851895 + 59224338 59224390 MLT1C 463 - 36 88 200149 52 chain 32164 chr12 133851895 + 59229834 59230218 L1PA7 6471 - 1 389 80594 161 0 1 208 0 3 15 chain 368747 chr12 133851895 + 59230220 59235598 L1P2 5180 - 75 5177 11129 16 1 0 89 0 1 337 0 1 304 0 8 110 1 0 220 0 1 17 3 0 266 10 9 11 0 1 799 0 1 47 6 0 118 1 2 427 0 1 1068 4 5 9 0 4 183 1 0 5 0 1 240 3 18 29 39 18 104 21 23 47 81 3 38 14 14 4 0 1 15 33 33 10 19 0 38 455 271 135 chain 63074 chr12 133851895 + 59245646 59246405 LTR17 781 - 0 781 51416 44 8 30 380 1 0 58 0 1 268 chain 379665 chr12 133851895 + 59246719 59251053 HERV17-int 4347 - 0 4335 10763 1206 2 0 10 0 2 904 0 1 753 1 2 122 2 0 144 0 2 50 1 0 346 0 1 628 4 8 29 1 0 25 2 0 36 1 0 51 1 0 15 chain 62851 chr12 133851895 + 59252775 59253534 LTR17 781 - 0 781 51509 59 1 23 372 1 0 68 3 5 122 9 8 124 chain 17407 chr12 133851895 + 59264968 59265178 L1PA4 6152 + 5937 6152 134479 204 0 5 6 chain 136352 chr12 133851895 + 59296356 59297885 L1PA3long 6157 - 0 1538 26774 52 1 5 401 1 0 314 1 3 68 0 4 691 chain 243547 chr12 133851895 + 59338088 59343906 L1PB1 5432 - 28 5347 16585 13 1 0 21 1 0 24 2 0 14 8 5 18 19 9 5 1 0 15 2 1 38 7 6 14 2 1 50 3 1 11 16 11 9 1 0 24 77 1788 295 1586 13 176 3 0 211 3 0 5 0 1 92 311 0 36 20 8 233 289 1 96 0 5 221 0 1 223 10 5 216 0 29 23 42 34 7 1 0 83 1 0 196 1 0 32 19 9 430 55 16 9 0 39 170 1 2 4 1 0 109 2 0 18 5 6 187 chain 115947 chr12 133851895 + 59338792 59340107 L1PA5 6144 - 3 1462 32479 833 0 143 389 0 1 93 chain 9694 chr12 133851895 + 59357458 59357642 MER31A 484 + 150 350 162116 61 0 4 17 40 55 5 3 0 58 chain 6539 chr12 133851895 + 59369016 59369100 ORSL-2b 485 + 130 214 180933 84 chain 20319 chr12 133851895 + 59375251 59375531 L1PA8A 6298 + 6010 6290 126181 82 11 19 33 9 0 39 0 1 106 chain 45884 chr12 133851895 + 59380850 59381592 L1PA15 4387 + 3590 4327 62140 6 4 0 49 0 1 62 6 9 96 2 0 16 3 0 62 14 12 29 1 0 27 1 0 9 0 10 126 1 0 26 1 0 54 2 1 22 4 0 10 1 0 35 24 21 12 0 7 24 2 0 11 chain 21200 chr12 133851895 + 59382075 59382434 THE1B 368 + 8 368 123214 39 73 74 51 3 2 122 0 1 71 chain 263928 chr12 133851895 + 59386336 59389242 L1PA4 6152 - 62 2969 15491 2151 0 1 755 chain 29978 chr12 133851895 + 59495424 59495856 LTR7 482 + 0 482 84877 138 38 45 28 8 50 44 0 1 176 chain 295206 chr12 133851895 + 59495858 59499646 HERVH-int 3825 + 0 3824 13689 532 188 0 38 2 1 9 1 0 8 1 0 16 28 0 15 1 0 12 21 18 7 1 0 42 3 2 54 1 2 8 0 2 12 0 3 580 1 0 20 0 1 301 7 33 25 0 1 273 0 10 271 2 1 352 0 1 420 9 11 39 0 210 23 13 14 231 0 2 129 0 3 92 chain 5387 chr12 133851895 + 59496390 59496450 HERVH-int 3825 + 471 531 182924 60 chain 5379 chr12 133851895 + 59496450 59496512 HERVH-int 3825 + 470 532 183904 62 chain 1955 chr12 133851895 + 59496654 59496681 HERVH-int 3825 + 656 683 206587 27 chain 82020 chr12 133851895 + 59501994 59502965 LTR5_Hs 974 + 0 974 42749 411 7 0 74 0 1 19 0 1 221 3 0 97 0 7 39 2 0 21 0 6 77 chain 11513 chr12 133851895 + 59511769 59511907 Tigger3a 397 + 142 280 154242 138 chain 27179 chr12 133851895 + 59517490 59517855 THE1B 368 - 0 368 95665 75 1 0 94 1 3 23 2 1 127 0 5 27 2 0 13 chain 77649 chr12 133851895 + 59532667 59533633 L1PA7 6471 - 12 1001 44674 135 0 1 7 2 0 103 2 1 285 0 17 49 0 1 64 11 14 164 0 4 144 chain 156714 chr12 133851895 + 59539786 59541524 L1PA3long 6157 + 4405 6144 23766 29 0 1 865 1 0 714 0 1 129 chain 32943 chr12 133851895 + 59548132 59548576 MLT2A1 477 - 0 477 79303 37 21 55 180 1 2 21 0 1 11 5 2 168 chain 3761 chr12 133851895 + 59559763 59559848 MER3 215 - 103 188 210946 33 16 17 11 6 5 19 chain 32423 chr12 133851895 + 59584128 59584591 L1PA8 5853 + 5390 5853 80161 174 1 0 46 2 0 23 0 7 35 5 4 12 10 9 39 17 16 5 1 0 30 1 0 8 0 1 54 chain 25643 chr12 133851895 + 59588047 59588391 THE1B 368 - 0 368 101526 75 1 0 101 2 0 23 1 0 18 0 13 83 0 15 40 chain 40523 chr12 133851895 + 59594687 59595156 L1PA5 6144 + 5673 6142 68560 469 chain 549504 chr12 133851895 + 59615796 59622256 L1PA3long 6157 - 0 6157 1515 856 1 0 937 0 4 415 0 1 745 316 0 28 0 1 479 0 1 945 1 9 20 1 0 1716 chain 26684 chr12 133851895 + 59618760 59619066 AluYk4 311 - 7 311 97370 178 2 0 126 chain 343610 chr12 133851895 + 59637003 59642594 L1PA8A 6298 + 1582 6289 11793 108 4 8 249 0 1 257 2 3 301 0 1 54 8 0 12 0 1 55 2 0 9 0 2 70 36 52 5 0 2 77 3 4 4 1 0 108 0 4 454 1 13 13 0 1 4 0 2 11 1 3 11 1 4 29 0 2 253 0 1 105 1 2 40 0 3 205 5 6 32 753 8 62 0 1 5 1 0 515 0 1 63 0 1 6 0 4 61 0 3 532 0 8 53 1 0 32 225 0 9 4 0 24 11 8 345 0 1 41 7 8 6 0 1 62 8 9 96 0 1 25 5 8 30 0 16 39 2 5 37 chain 21171 chr12 133851895 + 59652832 59653336 L1PB1 5432 + 4861 5392 123305 98 15 12 58 103 153 38 2 1 16 1 0 42 2 1 16 27 16 14 3 1 5 1 0 14 2 0 24 1 0 22 chain 440465 chr12 133851895 + 59662014 59667845 L1PA8 5853 + 50 5850 9045 21 4 2 9 1 0 13 52 13 98 12 19 75 24 28 232 10 0 8 17 27 47 0 1 162 0 12 242 25 29 103 1 0 4 1 2 37 5 6 162 0 1 345 0 6 263 17 0 369 0 2 65 6 5 213 4 0 188 11 13 341 8 0 1157 1 0 457 1 2 181 2 0 475 0 9 70 2 1 45 2 0 69 1 0 9 1 0 11 0 1 40 2 1 19 1 0 90 chain 8570 chr12 133851895 + 59676578 59676682 L1PA5 6144 + 6034 6137 167904 12 2 1 90 chain 54796 chr12 133851895 + 59689136 59689820 LTR12_ 688 + 0 687 55846 25 1 0 40 7 5 215 5 4 319 0 7 72 chain 31566 chr12 133851895 + 59694971 59695383 L1P1 4361 - 33 442 81534 23 1 0 157 5 4 106 2 1 118 chain 135134 chr12 133851895 + 59695383 59697095 L1P1 4361 + 2202 3911 26984 103 16 11 14 6 0 55 6 7 177 0 3 373 5 6 185 0 5 18 1 0 18 1 0 734 chain 43156 chr12 133851895 + 59716968 59717450 LTR7 482 - 0 482 65220 91 0 2 140 2 0 249 chain 293926 chr12 133851895 + 59718699 59722283 HERVH-int 3825 - 0 3825 13770 234 0 2 209 1 2 40 8 218 31 0 3 7 0 3 702 0 1 433 0 1 223 4 31 110 0 5 346 16 1 442 0 3 13 4 7 59 2 1 42 0 37 15 34 5 19 1 0 10 1 0 30 0 56 34 64 0 450 chain 44682 chr12 133851895 + 59722285 59722767 LTR7 482 - 0 482 63394 482 chain 50040 chr12 133851895 + 59733118 59733703 L1PA5 6144 - 12 604 58994 220 5 12 360 chain 264965 chr12 133851895 + 59740069 59743479 L1PA8 5853 - 0 3321 15443 93 1 0 19 2 1 40 4 7 14 5 4 24 7 10 32 2 0 45 1 0 83 0 1 466 0 7 205 1 2 112 110 0 52 0 8 29 1 0 31 0 1 195 0 3 151 4 3 678 1 0 623 1 5 27 1 0 350 chain 8543 chr12 133851895 + 59741225 59741327 L1PA8 5853 - 11 112 166236 82 1 0 19 chain 44540 chr12 133851895 + 59747147 59747648 LTR2C 499 - 0 499 63539 13 1 0 133 1 0 353 chain 19357 chr12 133851895 + 59749204 59749502 L1PA13 3608 - 123 411 129055 19 9 8 10 2 0 5 2 0 47 9 7 54 1 0 62 2 0 76 chain 2934 chr12 133851895 + 59756352 59756384 MER5A1 166 - 102 134 226439 32 chain 21912 chr12 133851895 + 59775686 59775936 L1PA7 6471 - 12 262 120581 250 chain 33538 chr12 133851895 + 59781403 59781844 LTR2 463 + 0 463 78332 155 15 36 171 12 13 88 chain 442699 chr12 133851895 + 59783600 59789910 L1PA8A 6298 + 50 6290 8971 6 1 0 12 8 3 6 6 0 23 3 0 19 56 46 5 1 0 19 2 0 15 2 0 4 1 0 12 12 10 7 1 0 5 1 0 9 14 9 6 2 0 27 13 12 22 3 1 6 6 0 18 14 15 37 2 0 13 6 5 11 4 2 48 1 2 21 7 6 72 3 2 48 5 6 165 5 1 54 7 5 267 7 11 473 7 6 22 0 1 572 0 1 170 0 2 116 1 2 62 13 0 395 0 4 58 1 0 53 0 1 11 0 1 4 47 7 268 1 0 33 1 0 143 0 1 141 0 1 78 3 2 82 7 9 9 0 1 91 0 1 76 4 8 49 7 8 720 3 0 10 16 27 206 36 37 4 1 0 16 1 0 86 0 9 126 0 2 58 0 1 81 0 3 77 0 2 55 0 2 102 0 3 19 7 0 438 3 4 97 chain 9578 chr12 133851895 + 59817914 59818207 L1MA8 2339 - 82 330 162703 10 1 0 14 26 24 13 6 0 36 14 11 25 34 7 10 14 12 17 1 0 16 10 7 46 chain 70269 chr12 133851895 + 59833548 59834622 MER11A 1151 + 0 1145 48283 46 9 108 22 8 0 54 0 4 60 4 0 149 0 1 91 12 13 135 6 7 120 0 26 26 43 0 24 22 5 19 10 11 34 7 6 22 0 1 140 0 10 11 chain 47060 chr12 133851895 + 59834940 59835508 L1PA8A 6298 - 7 578 61157 303 0 3 265 chain 94250 chr12 133851895 + 59859872 59860904 L1PA2 6032 - 1868 2900 38278 1032 chain 165840 chr12 133851895 + 59860906 59862736 L1PA2 6032 + 4197 6031 22535 28 0 4 1802 chain 16755 chr12 133851895 + 59864468 59864712 L1PA8 5853 - 0 240 136246 93 2 1 15 1 0 50 18 16 65 chain 42737 chr12 133851895 + 59864713 59865259 LTR12_ 688 + 0 673 65736 55 0 41 67 24 7 259 0 103 141 chain 232469 chr12 133851895 + 59865302 59868247 HERV9-int 5642 + 0 4824 17172 229 1 4 7 3 0 359 25 13 100 0 4 72 4 3 143 0 84 81 9 7 65 0 1 212 0 1 193 5 4 256 3 5 270 2 1 4 0 1 56 0 1 306 0 6 202 0 1 149 0 1795 189 chain 61372 chr12 133851895 + 59869145 59869958 LTR12 884 + 0 844 52164 89 26 1 243 1 27 14 4 26 163 7 15 266 chain 22670 chr12 133851895 + 59870026 59870302 L1PA8 5853 + 5138 5412 117215 114 2 0 160 chain 12321 chr12 133851895 + 59870302 59870464 L1PA8 5853 + 5413 5575 150932 107 0 1 43 2 1 10 chain 161298 chr12 133851895 + 59872457 59874268 L1PA4 6152 - 0 1816 23151 6 0 5 533 0 1 312 1 0 959 chain 65149 chr12 133851895 + 59874271 59875011 L1PA4 6152 + 3542 4328 50502 592 0 46 148 chain 73023 chr12 133851895 + 59891944 59892786 L1P1 4361 - 644 1488 47017 39 0 3 478 1 0 324 chain 32628 chr12 133851895 + 59892786 59893146 L1PA5 6144 + 5784 6144 79799 360 chain 20950 chr12 133851895 + 59903361 59903643 L1MA3 4352 + 3538 3821 124104 73 6 8 94 1 0 108 chain 11634 chr12 133851895 + 59910151 59910317 L1PA8 5853 - 0 165 153753 12 0 1 77 5 4 18 2 1 52 chain 91204 chr12 133851895 + 59912167 59913288 HERVL-int 5654 - 4520 5654 39233 12 2 0 97 0 13 264 0 1 98 1 0 401 0 2 246 chain 31518 chr12 133851895 + 59913288 59913770 MLT2A1 477 - 0 477 81617 35 17 5 10 7 0 8 3 0 5 2 0 22 5 7 140 2 20 21 0 1 21 0 1 11 4 1 169 chain 30965 chr12 133851895 + 59963255 59963702 MLT2A1 477 - 2 477 82571 35 28 57 108 1 0 4 0 1 65 0 1 24 0 1 9 10 7 163 chain 213974 chr12 133851895 + 59963702 59966316 HERVL-int 5654 - 0 2629 18228 749 7 9 246 8 7 83 0 1 328 23 31 227 0 1 4 0 2 716 0 1 163 0 1 60 chain 25797 chr12 133851895 + 59966918 59967314 MLT2A1 477 - 80 468 100890 9 4 0 9 0 3 13 6 5 88 11 5 61 0 1 21 0 1 11 5 2 34 7 8 117 chain 9366 chr12 133851895 + 59974750 59974858 L1PA5 6144 - 6 114 163727 108 chain 18555 chr12 133851895 + 59983635 59983830 L1PA2 6032 - 3 198 131344 195 chain 40431 chr12 133851895 + 59983830 59984265 L1PA2 6032 + 5375 5810 68692 435 chain 7100 chr12 133851895 + 60132181 60132289 PABL_A 660 - 11 119 176755 80 15 15 13 chain 130565 chr12 133851895 + 60132825 60134257 L1PA3long 6157 - 0 1431 27953 54 1 0 1377 chain 71855 chr12 133851895 + 60134257 60135048 L1PA3long 6157 + 3910 4701 47537 791 chain 97725 chr12 133851895 + 60143737 60144885 L1PA7 6471 + 5201 6353 37355 413 0 3 81 0 2 431 1 0 222 chain 551258 chr12 133851895 + 60144893 60151047 L1PA3long 6157 + 4 6157 1280 11 12 5 234 0 1 324 1 0 468 0 2 2948 0 3 407 1 0 706 0 1 366 0 1 676 chain 10063 chr12 133851895 + 60151064 60151190 L1PA7 6471 + 6340 6468 160259 109 0 6 6 4 0 7 chain 249198 chr12 133851895 + 60158114 60160897 L1PA4 6152 - 0 2787 16299 677 0 1 1070 1 0 53 0 4 982 chain 24991 chr12 133851895 + 60161604 60161880 L1PA5 6144 + 5864 6140 104852 276 chain 40975 chr12 133851895 + 60171436 60171890 L1PA3long 6157 - 0 455 67945 142 0 1 312 chain 28347 chr12 133851895 + 60179661 60179975 L1PA3long 6157 + 5842 6156 91774 314 chain 275007 chr12 133851895 + 60190345 60194406 L1PA10 4194 + 175 4138 14923 15 8 0 9 3 0 8 2 0 9 11 7 9 2 0 10 1 0 6 6 5 19 2 0 15 1 0 7 45 19 22 2 0 21 1 0 7 3 7 12 0 2 9 27 1 13 1 0 43 0 4 5 3 0 15 8 10 39 1 4 278 3 5 79 10 9 80 0 1 24 0 1 436 21 18 44 0 2 188 4 5 527 1 5 253 0 1 84 9 13 30 54 52 76 0 1 240 0 12 86 2 1 118 0 14 17 67 0 56 33 37 254 0 1 126 1 0 4 0 1 388 14 13 9 3 0 22 chain 240077 chr12 133851895 + 60247497 60250486 L1PA7 6471 - 1 3641 16771 11 4 0 147 1 0 218 1 5 462 4 7 592 0 1 75 6 0 275 0 8 183 0 4 191 6 553 47 7 1 169 10 97 113 0 1 69 0 1 258 0 1 82 3 14 55 chain 149448 chr12 133851895 + 60250487 60252298 L1PA7 6471 + 869 2678 24694 317 0 10 262 0 1 5 1 0 1010 16 15 31 0 2 110 13 0 46 chain 11855 chr12 133851895 + 60267274 60267554 L1PB1 5432 + 5175 5430 152814 45 2 1 10 7 6 42 2 1 14 26 14 19 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 1 0 6 chain 4102 chr12 133851895 + 60272791 60272848 Tigger3 1187 - 443 500 205922 47 1 0 4 0 1 5 chain 25046 chr12 133851895 + 60294639 60294988 THE1C 375 + 0 360 104565 39 1 6 93 1 5 32 0 2 9 11 12 151 1 0 11 chain 73671 chr12 133851895 + 60318205 60319169 L1PB1 5432 - 816 1791 46696 70 6 5 49 9 10 90 0 9 355 0 2 41 11 12 248 1 0 84 chain 11229 chr12 133851895 + 60319718 60320035 L1PB1 5432 + 5106 5420 155311 8 1 0 13 21 19 12 19 43 19 2 1 15 1 0 45 1 0 15 3 0 6 20 10 15 28 23 20 1 0 21 1 0 13 1 0 16 chain 439478 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354 chain 150130 chr12 133851895 + 60410406 60412071 L1PA3long 6157 - 0 1667 24596 154 0 1 928 0 1 583 chain 68133 chr12 133851895 + 60412079 60412822 L1PA3long 6157 + 3709 4452 49189 743 chain 19542 chr12 133851895 + 60445249 60445483 AluY 311 + 28 286 128540 107 0 24 127 chain 24075 chr12 133851895 + 60451508 60451802 THE1C-int 1605 + 33 328 109903 260 0 1 34 chain 24253 chr12 133851895 + 60485618 60486043 LTR21B 408 - 19 408 108928 4 0 1 37 16 13 4 0 1 6 2 0 76 56 31 116 1 0 31 1 0 4 4 0 38 2 0 27 chain 15956 chr12 133851895 + 60518856 60519211 THE1B 368 + 0 368 138497 47 1 2 28 66 69 26 3 2 24 45 55 115 chain 18190 chr12 133851895 + 60523777 60523967 AluYa5 310 + 119 309 132356 190 chain 171925 chr12 133851895 + 60542973 60545094 L1PA7 6471 - 10 2505 21824 263 8 4 16 2 1 228 3 5 240 1 4 71 0 7 39 0 9 442 0 353 107 0 4 275 0 1 426 chain 24473 chr12 133851895 + 60572513 60572780 L1HS 6032 + 5765 6032 107684 267 chain 23048 chr12 133851895 + 60607213 60607592 THE1C 375 + 0 375 115407 104 31 35 6 4 0 34 23 20 153 1 0 23 chain 497594 chr12 133851895 + 60628155 60634542 L1PA7 6471 + 1 6470 6977 4 1 0 700 10 12 127 15 14 55 0 15 61 1 2 8 4 5 233 0 6 154 8 12 233 8 9 11 0 1 214 8 9 187 0 1 39 0 1 517 2 3 185 0 1 26 0 3 673 1 2 16 7 18 70 0 1 183 1 5 492 1 0 83 7 8 269 0 8 141 0 1 136 1 2 648 0 1 17 0 4 91 0 7 156 17 26 103 8 1 29 0 1 95 0 1 121 18 18 31 0 1 127 0 1 34 chain 3212 chr12 133851895 + 60664043 60664084 LTR12E 1234 + 781 822 220711 41 chain 3885 chr12 133851895 + 60675962 60676035 MER52A 1651 - 741 853 209105 13 18 57 42 chain 28777 chr12 133851895 + 60678651 60679135 MER9a3 513 - 0 513 89992 17 10 5 57 22 26 103 0 10 20 0 17 67 11 12 49 22 23 57 8 7 26 2 4 13 chain 2915 chr12 133851895 + 60689609 60689642 MER50-int 1626 + 1319 1352 226795 33 chain 28809 chr12 133851895 + 60716087 60716390 AluYh9 303 - 0 303 89853 303 chain 5304 chr12 133851895 + 60735630 60735721 HY1 111 - 23 110 191974 20 19 15 52 chain 78797 chr12 133851895 + 60772994 60774068 L1PA10 4194 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1 0 81 4 9 6 5 0 118 18 17 440 0 3 37 10 0 45 12 13 252 1 0 5 0 1 47 290 128 11 2 0 51 2 1 16 1 0 32 0 1 11 1 0 15 51 36 14 2 0 24 1 0 21 1 0 13 1 0 6 chain 11080 chr12 133851895 + 60837444 60837585 L1PB1 5432 - 351 492 155895 141 chain 4008 chr12 133851895 + 60866274 60866318 MADE1 96 - 0 44 207264 44 chain 4178 chr12 133851895 + 60878176 60878226 MER67D 511 - 181 231 204862 50 chain 5794 chr12 133851895 + 60878230 60878313 MLT2A1 477 - 358 477 187221 28 5 41 50 chain 94502 chr12 133851895 + 60890536 60891678 L1PA5 6144 + 4991 6144 38207 280 1 5 10 3 0 5 1 7 10 3 0 437 0 4 71 0 3 30 0 3 6 9 6 276 chain 121126 chr12 133851895 + 60896142 60897514 L1PA4 6152 - 1 1378 30659 5 2 0 9 0 3 109 0 2 19 0 1 1079 1 2 148 chain 43517 chr12 133851895 + 60898893 60899376 L1PA3long 6157 - 4 488 64784 334 0 1 149 chain 27028 chr12 133851895 + 60899376 60899668 L1PA3long 6157 + 5359 5651 96194 292 chain 45283 chr12 133851895 + 60971383 60971970 LTR22 571 + 0 571 62737 193 4 5 107 0 1 57 18 0 208 chain 207060 chr12 133851895 + 60979440 60981966 L1PA7 6471 + 3918 6463 18713 5 0 3 576 4 3 134 1 0 542 0 1 4 1 0 436 0 7 81 2 0 315 0 2 129 0 11 46 1 0 6 0 1 243 chain 67954 chr12 133851895 + 60996974 60998152 MER11B 1079 - 0 1079 49261 29 1 0 130 1 0 35 0 1 18 0 1 75 64 56 16 1 0 104 104 104 12 0 1 34 1 0 37 1 0 65 0 2 219 90 0 80 1 0 60 chain 3614 chr12 133851895 + 60997960 60998001 MER11B 1079 - 979 1020 213431 41 chain 324588 chr12 133851895 + 61013875 61018181 L1PA7 6471 + 626 6468 12413 99 10 19 139 0 2 42 18 18 180 9 0 7 8 17 66 0 4 6 0 1 85 1 12 25 18 19 402 1 5 338 0 1 152 1 0 254 0 2 111 11 12 210 0 1 24 7 11 205 0 4 9 5 5 362 0 1 28 1 5 40 13 17 45 0 1 201 5 1 184 1 0 10 1 5 62 10 12 23 5 1484 27 1 0 75 7 9 329 0 1 29 0 1 247 11 10 146 chain 37037 chr12 133851895 + 61030758 61031223 HERVL-int 5654 + 0 464 73474 441 4 3 20 chain 37990 chr12 133851895 + 61045650 61046451 LTR10A 586 - 44 568 72147 74 0 3 259 0 29 102 314 5 52 chain 3926 chr12 133851895 + 61067899 61067942 L1PA16 3655 - 120 163 208480 43 chain 25823 chr12 133851895 + 61077903 61078191 L1PA4 6152 + 5864 6152 100776 288 chain 33256 chr12 133851895 + 61078804 61079215 LTR3 431 + 6 419 78794 42 0 1 199 5 6 165 chain 102337 chr12 133851895 + 61101026 61102288 L1PA7 6471 - 10 1276 36186 139 1 0 6 2 0 5 1 4 63 0 1 539 1 4 103 0 1 6 1 0 395 chain 242784 chr12 133851895 + 61120331 61123124 L1PA4 6152 + 3331 6143 16624 1298 0 1 143 0 1 245 0 9 269 1 5 224 0 2 283 1 2 181 13 14 135 chain 10578 chr12 133851895 + 61130767 61130890 L1PA5 6144 - 447 570 157922 123 chain 35608 chr12 133851895 + 61130890 61131311 L1PA5 6144 + 5725 6144 75405 166 1 0 241 2 1 11 chain 431036 chr12 133851895 + 61139544 61145399 L1PA8 5853 + 50 5839 9289 22 2 0 10 1 0 6 65 26 191 0 4 566 10 13 966 20 19 26 3 2 59 1 5 59 36 3 784 0 2 23 1 6 45 22 23 4 0 1 19 0 4 65 2 1 93 6 5 281 11 6 305 1 0 365 0 4 125 0 2 25 3 2 87 7 8 22 1 0 171 21 16 183 4 5 290 3 0 10 3 5 39 0 1 30 0 2 478 1 0 44 11 9 61 2 1 13 1 0 52 19 16 79 chain 11341 chr12 133851895 + 61147251 61147816 L1MA6 2487 + 2098 2484 154919 45 0 1 53 1 0 22 195 129 30 3 0 17 170 61 4 1 0 24 chain 484995 chr12 133851895 + 61155253 61160739 L1PA3long 6157 - 1 6157 7559 151 0 8 671 0 1 17 0 4 641 1 0 1400 2 1 558 9 7 83 0 1 328 0 1 170 0 3 483 0 1 151 0 1 566 0 128 159 0 526 96 chain 8882 chr12 133851895 + 61165400 61165532 L1P3 4156 - 21 150 166220 20 11 8 101 chain 36961 chr12 133851895 + 61165532 61166021 L1PA7 6471 + 5982 6465 73568 315 18 17 34 12 11 99 4 0 7 chain 138836 chr12 133851895 + 61170543 61172088 L1PA3long 6157 - 1 1548 26341 863 0 2 682 chain 60992 chr12 133851895 + 61172088 61172774 L1PA3long 6157 + 3926 4613 52336 385 0 1 301 chain 42298 chr12 133851895 + 61185128 61185614 L1PA2 6032 + 5551 6029 66267 470 8 0 8 chain 370012 chr12 133851895 + 61185711 61189986 L1PA4 6152 - 9 4282 11096 1633 9 0 152 0 4 64 0 1 1697 0 1 277 0 1 443 chain 398189 chr12 133851895 + 61202374 61206891 L1PA3long 6157 - 15 4536 10165 145 0 1 172 0 1 420 7 8 215 0 1 1253 1 0 899 1 2 262 1 2 442 1 0 698 chain 10285 chr12 133851895 + 61210988 61211103 L1PA5 6144 + 6029 6144 159206 115 chain 5831 chr12 133851895 + 61232279 61232342 L1PA5 6144 + 6072 6135 186853 63 chain 11862 chr12 133851895 + 61247551 61247704 L1PA5 6144 - 1 149 152777 8 5 0 140 chain 147597 chr12 133851895 + 61249575 61251249 L1PA4 6152 - 14 1696 24941 142 1 0 865 6 11 623 0 4 37 chain 87983 chr12 133851895 + 61273675 61275238 L1MA1 4479 + 2608 4151 40381 62 1 0 101 64 61 40 12 8 5 0 3 70 1 0 27 2 0 166 8 6 94 1 0 6 8 15 30 15 10 75 3 0 5 6 8 120 2 0 94 0 6 89 6 5 25 2 0 16 1 0 10 2 0 5 0 2 54 14 13 6 2 0 14 1 0 87 97 95 37 1 0 23 13 11 30 1 0 9 chain 79570 chr12 133851895 + 61290243 61291133 L1PA3long 6157 - 5 898 43796 218 0 1 5 0 2 667 chain 58141 chr12 133851895 + 61291133 61291774 L1PA3long 6157 + 4596 5237 53848 641 chain 5043 chr12 133851895 + 61315952 61316027 L1P1 4361 + 2296 2372 194697 11 0 2 5 2 1 57 chain 23952 chr12 133851895 + 61341823 61342117 AluY 311 + 5 294 110602 121 5 0 168 chain 19896 chr12 133851895 + 61345060 61345452 LTR7 482 - 12 482 127496 37 12 14 110 0 2 11 1 32 36 3 4 10 77 31 19 9 97 67 chain 313710 chr12 133851895 + 61347249 61350994 HERVH-int 3825 - 0 3825 12866 366 0 1 1008 19 20 152 0 4 203 5 6 236 1 0 512 5 6 532 1 0 75 11 13 35 1 0 25 13 27 4 1 0 12 0 57 153 0 2 43 1 0 150 0 2 181 chain 361488 chr12 133851895 + 61365852 61370059 L1PA5 6144 - 2 4206 11327 847 0 4 180 0 1 139 0 1 235 0 3 1059 3 0 83 0 15 208 1 5 435 0 2 818 34 4 165 chain 28397 chr12 133851895 + 61373054 61373465 LTR7 482 - 0 482 91595 186 6 7 25 0 31 8 0 1 109 29 44 7 0 23 41 chain 31104 chr12 133851895 + 61377485 61377937 L1PB2 3958 - 185 628 82333 24 2 0 67 2 1 62 3 1 167 2 0 12 2 0 50 0 2 10 5 0 18 0 3 26 chain 387430 chr12 133851895 + 61394138 61399286 L1PA4 6152 - 0 4423 10537 6 2 0 762 1 0 354 1 0 641 0 1 28 0 4 51 1 0 355 727 0 1512 0 1 198 0 1 509 chain 66445 chr12 133851895 + 61396340 61397055 L1HS 6032 - 0 716 49895 150 0 1 565 chain 111370 chr12 133851895 + 61407333 61408574 L1PA4 6152 - 0 1243 33845 339 0 1 649 0 1 253 chain 235926 chr12 133851895 + 61413041 61417016 L1PB1 5432 - 5 3527 16980 5 2 0 18 1 0 13 1 0 21 1 0 23 5 3 13 1 0 4 2 0 11 0 1 7 45 31 41 26 24 44 18 12 10 2 1 7 1 0 18 519 12 301 4 5 90 1 2 76 5 6 304 0 61 245 0 1 198 7 23 58 7 10 53 5 8 44 21 22 344 0 1 46 2 0 204 1 0 171 2 0 90 7 8 71 26 27 14 18 13 15 4 6 54 0 1 43 0 1 84 12 11 41 0 1 432 0 2 16 chain 7570 chr12 133851895 + 61417935 61418217 LTR12D 1347 + 1023 1170 173733 25 1 0 4 103 0 30 1 0 16 34 1 12 14 17 42 chain 37777 chr12 133851895 + 61424796 61425304 MER9a3 513 - 0 513 72450 27 11 13 39 4 5 171 7 6 141 0 1 90 0 2 18 chain 55656 chr12 133851895 + 61440398 61441013 L1PA3long 6157 - 8 624 55336 330 0 1 285 chain 45587 chr12 133851895 + 61448532 61449043 L1PA3long 6157 - 15 526 62423 48 0 1 298 2 1 163 chain 62929 chr12 133851895 + 61449048 61449744 L1P1 4361 + 3607 4305 51476 543 1 0 105 0 3 47 chain 3011 chr12 133851895 + 61451913 61451945 L1PREC2 3366 + 2594 2626 224816 32 chain 34905 chr12 133851895 + 61455046 61455444 L1P1 4361 - 1854 2252 76197 398 chain 119395 chr12 133851895 + 61455444 61456850 L1P1 4361 + 680 2079 31267 12 7 0 1387 chain 36310 chr12 133851895 + 61469375 61469777 L1PA3long 6157 - 17 419 74493 402 chain 328282 chr12 133851895 + 61470174 61473935 L1PA4 6152 + 3 6152 12267 259 0 2379 245 0 3 1462 0 4 182 0 2 1613 chain 10505 chr12 133851895 + 61496303 61496422 L1PA4 6152 - 9 128 158225 119 chain 14214 chr12 133851895 + 61505954 61506116 L1P1 4361 - 33 194 143832 23 1 0 138 chain 158910 chr12 133851895 + 61515536 61517732 HERVL-int 5654 + 3430 5641 23474 33 8 9 448 7 8 98 13 0 16 0 21 44 3 4 688 0 1 159 0 1 89 0 1 22 6 7 90 0 1 47 13 13 202 0 3 5 7 0 25 66 69 107 chain 7125 chr12 133851895 + 61526943 61527036 MER4A1_ 611 + 0 93 176579 8 1 0 4 0 1 80 chain 185169 chr12 133851895 + 61528374 61530484 L1P1 4361 - 20 2128 20485 12 2 1 23 1 0 155 1 0 448 0 1 1468 chain 20679 chr12 133851895 + 61539843 61540090 AluY 311 + 16 261 125035 109 4 2 134 chain 172082 chr12 133851895 + 61540197 61542182 L1PA4 6152 - 9 1995 21803 835 0 4 1067 3 0 80 chain 40003 chr12 133851895 + 61542183 61542633 L1PA5 6144 + 5689 6138 69315 346 1 0 103 chain 101562 chr12 133851895 + 61547724 61548864 L1PA4 6152 - 12 1154 36379 664 0 2 476 chain 10849 chr12 133851895 + 61548865 61548985 L1PA4 6152 + 4871 4991 156783 120 chain 24475 chr12 133851895 + 61579680 61579962 AluSg4 309 + 5 288 107679 120 0 1 162 chain 31881 chr12 133851895 + 61590806 61591246 MLT2A1 477 - 0 477 81045 6 0 4 20 0 4 25 6 36 203 2 0 9 7 4 145 1 5 16 chain 467640 chr12 133851895 + 61597665 61602985 L1PA4 6152 - 1 5616 8125 148 1 0 185 0 1 376 0 3 445 0 1 2679 1 0 597 0 1 77 0 298 154 23 14 28 0 2 414 0 1 151 1 0 40 chain 326144 chr12 133851895 + 61614671 61618317 L1PA3long 6157 - 0 3656 12342 147 1 2 897 0 1 749 0 4 1094 0 4 758 chain 17103 chr12 133851895 + 61624397 61624730 L1MA1 4479 - 293 607 135305 13 26 18 4 1 0 9 5 4 31 2 0 30 3 2 120 3 0 8 1 0 24 0 11 8 16 3 29 chain 7577 chr12 133851895 + 61627068 61627161 MER85 139 - 43 138 173686 14 0 2 79 chain 37645 chr12 133851895 + 61630917 61631362 L1PA4 6152 - 0 457 72628 185 0 12 50 0 4 145 4 0 61 chain 289365 chr12 133851895 + 61643881 61647554 HERVL-int 5654 - 2 3687 14062 83 3 4 32 0 1 4 11 9 4 1 0 15 10 13 59 0 5 150 15 16 308 1 0 45 0 3 21 25 9 649 0 1 131 6 11 326 1 0 4 0 1 413 0 15 755 0 1 80 1 0 284 3 0 233 chain 175318 chr12 133851895 + 61672233 61674394 L1PA7 6471 + 4312 6469 21417 15 0 1 158 1 2 531 1 0 208 0 1 172 0 1 99 16 0 39 5 4 78 1 0 81 0 9 282 0 2 104 1 0 208 0 1 161 chain 7423 chr12 133851895 + 61677518 61677610 L1PA8 5853 - 0 92 174631 92 chain 544045 chr12 133851895 + 61687564 61693687 L1PA3long 6157 + 10 6149 2203 946 0 4 98 0 1 131 0 3 11 1 0 4 1 2 350 0 1 1139 0 5 466 1 0 349 1 0 314 0 1 35 1 0 878 0 3 1258 0 1 139 chain 526788 chr12 133851895 + 61710527 61716652 L1PA5 6144 + 7 6140 4521 1266 0 1 89 1 11 298 0 1 349 0 1 77 10 9 1048 0 1 179 0 2 645 0 3 1310 0 4 169 0 2 338 0 1 142 23 6 13 1 0 5 5 6 157 chain 27063 chr12 133851895 + 61718844 61719187 THE1A 353 - 11 353 96069 231 1 0 111 chain 122379 chr12 133851895 + 61719207 61720767 THE1A-int 1579 - 17 1579 30257 115 0 5 211 12 13 282 13 12 418 2 1 389 0 3 86 7 2 25 chain 24519 chr12 133851895 + 61736539 61736807 AluYb8 318 + 48 310 107446 78 6 0 184 chain 46967 chr12 133851895 + 61753393 61754337 LTR12_ 688 + 0 629 61234 14 0 1 75 26 1 54 0 24 309 315 0 151 chain 22061 chr12 133851895 + 61766991 61767228 L1HS 6032 - 4 241 119962 237 chain 18977 chr12 133851895 + 61770918 61771130 L1PA4 6152 - 1 214 130164 112 0 1 100 chain 25763 chr12 133851895 + 61782641 61783000 THE1C-int 1605 - 13 365 101032 99 1 0 85 8 1 79 9 10 78 chain 117100 chr12 133851895 + 61794176 61795489 L1PA3long 6157 - 781 2095 32090 43 6 7 1264 chain 69872 chr12 133851895 + 61795489 61796258 L1PA3long 6157 + 5380 6149 48452 769 chain 2533 chr12 133851895 + 61799268 61799418 L1ME1 1623 + 1372 1521 232710 4 1 0 28 1 0 4 95 96 17 chain 551491 chr12 133851895 + 61808759 61814896 L1PA3long 6157 - 2 6148 1253 839 0 4 948 0 4 2074 1 0 4 1 2 689 1 0 710 0 2 870 chain 7139 chr12 133851895 + 61841625 61841704 L1PA3long 6157 + 5928 6007 176479 79 chain 2891 chr12 133851895 + 61841704 61841738 L1PA3long 6157 + 6008 6042 227196 34 chain 10254 chr12 133851895 + 61841739 61841854 L1PA3long 6157 + 6042 6157 159358 115 chain 43812 chr12 133851895 + 61847443 61848004 THE1B-int 1605 + 1024 1597 64437 37 0 9 415 0 2 52 4 5 53 chain 42614 chr12 133851895 + 61851994 61852471 L1PA5 6144 - 921 1398 65881 477 chain 27741 chr12 133851895 + 61852471 61852787 L1PA5 6144 + 5334 5650 93901 316 chain 43202 chr12 133851895 + 61852787 61853277 L1PA5 6144 + 5651 6141 65168 490 chain 244304 chr12 133851895 + 61864821 61867857 L1PA3long 6157 - 14 2732 16540 739 320 0 368 0 1 108 0 1 1501 chain 28869 chr12 133851895 + 61865570 61865880 AluYa5 310 - 0 310 89590 310 chain 123698 chr12 133851895 + 61867857 61869233 L1PA3long 6157 + 1908 3289 29682 100 0 1 235 1 2 457 0 3 51 0 1 4 1 0 527 chain 30717 chr12 133851895 + 61888913 61889298 L1PA7 6471 - 5 377 83006 133 15 0 19 0 1 88 0 1 130 chain 20826 chr12 133851895 + 61923784 61924045 THE1B-int 1605 - 11 273 124519 95 0 1 166 chain 12690 chr12 133851895 + 61925155 61925319 L1PA16 3655 + 3431 3592 149488 148 3 0 13 chain 144143 chr12 133851895 + 61933326 61934904 L1PA2 6032 - 0 1578 25458 160 2 0 181 0 1 517 0 1 718 chain 71226 chr12 133851895 + 61934904 61935667 L1PA2 6032 + 3693 4456 47782 763 chain 15308 chr12 133851895 + 61975781 61975961 MER41A 554 - 0 180 140470 180 chain 87757 chr12 133851895 + 61975961 61976957 LTR13 1007 - 0 1007 40461 316 0 4 383 1 0 189 0 8 107 chain 79101 chr12 133851895 + 61983577 61984683 HERVH-int 3825 + 2882 3825 44000 91 165 0 42 1 0 71 0 3 736 chain 67748 chr12 133851895 + 61987413 61988262 L1PA7 6471 + 5626 6456 49348 658 0 6 6 41 16 144 chain 28306 chr12 133851895 + 62011094 62011390 AluYa5 310 - 14 310 91918 296 chain 60275 chr12 133851895 + 62024378 62025421 MER4E1 777 - 25 777 52695 201 3 11 107 7 0 90 292 0 343 chain 20039 chr12 133851895 + 62065972 62066192 L1PA3long 6157 + 5086 5306 127013 220 chain 77697 chr12 133851895 + 62066192 62067042 L1PA3long 6157 + 5307 6157 44659 850 chain 22625 chr12 133851895 + 62082727 62083041 L1PA10 4194 + 3847 4161 117460 102 0 7 154 12 6 34 1 0 11 chain 19298 chr12 133851895 + 62093284 62093701 MER61D 487 + 37 487 129249 30 13 46 140 27 29 13 11 7 12 23 28 44 51 49 37 1 0 15 chain 254744 chr12 133851895 + 62118612 62122751 L1PB2 3958 - 253 3933 15996 26 8 7 16 0 1 38 1 0 24 0 2 51 2 0 14 0 22 48 2 0 17 2 0 12 1 0 5 0 5 43 1 0 11 0 3 10 1 0 17 12 13 13 2 0 376 8 7 115 6 5 23 1 0 5 0 1 18 452 3 42 1 0 42 0 1 315 0 1 146 0 9 59 3 0 376 2 0 5 0 8 110 7 12 38 6 5 10 1 0 344 0 5 253 5 2 54 28 18 39 0 1 388 4 3 9 2 1 165 5 6 34 8 1 23 8 2 41 19 11 35 2 0 32 9 4 17 0 7 10 34 18 27 chain 9832 chr12 133851895 + 62127855 62127984 L1P1 4361 - 20 147 161437 12 2 1 23 1 0 91 chain 26831 chr12 133851895 + 62128007 62128305 L1PA3long 6157 + 5859 6157 96871 298 chain 18942 chr12 133851895 + 62133985 62134270 L1PA7 6471 + 6181 6470 130249 18 0 4 19 1 0 58 5 1 19 19 20 91 0 1 42 1 4 12 chain 89477 chr12 133851895 + 62140664 62141657 L1PA3long 6157 + 5162 6157 39814 238 0 3 737 1 0 17 chain 22826 chr12 133851895 + 62183206 62183479 L1PA7 6471 + 6194 6467 116466 273 chain 89577 chr12 133851895 + 62188496 62189518 L1PA5 6144 + 5119 6143 39787 862 1 4 4 0 1 142 3 1 10 chain 5870 chr12 133851895 + 62192111 62192180 L1PA7 6471 - 2 71 186474 69 chain 124144 chr12 133851895 + 62200284 62201859 THE1B-int 1605 + 1 1600 29651 78 14 15 336 1 26 1113 10 8 23 chain 24339 chr12 133851895 + 62258300 62258575 AluY 311 + 28 304 108426 104 0 1 171 chain 10319 chr12 133851895 + 62260721 62260842 L1PA4 6152 - 1 123 159035 7 0 1 114 chain 43881 chr12 133851895 + 62281216 62281697 L1PA2 6032 - 2 483 64354 481 chain 31525 chr12 133851895 + 62281707 62282044 L1PA2 6032 + 5215 5552 81603 337 chain 22781 chr12 133851895 + 62294200 62294549 THE1C 375 - 15 375 116674 10 1 0 91 13 14 5 1 0 58 0 1 30 3 13 22 9 10 106 chain 15141 chr12 133851895 + 62295057 62295218 L1HS 6032 - 0 161 140939 161 chain 512494 chr12 133851895 + 62316087 62322951 L1PA7 6471 + 3 6470 5923 160 7 9 53 15 0 17 18 35 134 0 1 99 0 1 147 1 2 33 20 21 167 1 7 352 0 4 352 0 3 159 6 4 752 4 6 117 5 6 4 0 1 160 3 4 478 29 9 55 95 0 51 0 1 347 0 7 245 1 0 36 7 6 345 317 0 251 0 1 141 0 2 163 1 2 486 1 2 172 14 8 237 0 1 278 10 17 305 2 0 11 chain 76408 chr12 133851895 + 62323085 62323941 L1PA4 6152 + 5290 6152 45258 841 0 6 15 chain 19672 chr12 133851895 + 62332280 62332604 L1PB3 3668 + 3282 3583 128193 72 0 4 30 4 3 87 22 4 13 1 0 8 1 0 25 3 1 37 7 3 14 chain 557727 chr12 133851895 + 62335221 62341238 L1PA2 6032 + 1 6019 532 5416 0 1 601 chain 70864 chr12 133851895 + 62356532 62357426 L1PA7 6471 - 1 952 47978 158 10 34 268 6 8 127 0 28 226 4 3 63 0 4 32 chain 27874 chr12 133851895 + 62357426 62357756 L1PA7 6471 + 4876 5205 92547 320 1 0 9 chain 27244 chr12 133851895 + 62357756 62358066 L1PA7 6471 + 5210 5520 95450 310 chain 11747 chr12 133851895 + 62365140 62365270 L1PA4 6152 + 6013 6143 153265 130 chain 28216 chr12 133851895 + 62365282 62365652 L1PA6 6164 + 5782 6153 92247 189 33 34 148 chain 45111 chr12 133851895 + 62370317 62370871 L1PA5 6144 - 2 565 62922 6 6 0 97 0 3 35 5 12 88 0 5 317 chain 192748 chr12 133851895 + 62373911 62376227 L1PA6 6164 + 3829 6162 19792 162 9 5 185 0 1 618 14 14 76 2 0 47 0 1 193 3 2 4 0 1 176 0 1 209 2 21 356 0 1 260 chain 127738 chr12 133851895 + 62403976 62405545 SVA_A 1864 + 27 1864 28635 98 10 23 313 1 119 36 4 2 48 1 4 125 10 8 37 2 110 37 2 0 37 2 0 95 0 36 53 2 0 656 chain 118351 chr12 133851895 + 62412245 62413602 L1PA4 6152 + 4791 6143 31667 38 19 8 896 0 5 271 0 1 133 chain 6866 chr12 133851895 + 62418951 62419091 L1PA16 3655 + 3506 3619 178456 72 3 0 11 26 7 7 5 0 16 chain 33608 chr12 133851895 + 62424875 62425351 MLT2A1 477 + 0 477 78230 157 18 15 32 0 1 89 1 0 91 4 0 12 30 38 42 chain 29307 chr12 133851895 + 62429510 62429820 AluYg6 310 - 0 310 87537 310 chain 40973 chr12 133851895 + 62436948 62437404 L1PA4 6152 + 5695 6151 67949 456 chain 23930 chr12 133851895 + 62452614 62452891 AluY 311 + 12 290 110749 120 0 1 157 chain 526481 chr12 133851895 + 62501773 62508228 L1PA7 6471 - 5 6468 4550 9 1 0 326 0 1 56 11 8 80 0 3 371 3 10 767 0 1 34 0 1 424 0 1 538 12 0 283 0 4 52 1 0 11 11 10 31 0 3 120 1 0 599 0 2 85 1 0 495 1 2 198 1 3 61 1 4 169 1 3 320 0 1 383 9 0 76 5 7 255 0 1 7 1 0 59 0 1 114 3 4 80 0 1 389 chain 2931 chr12 133851895 + 62510266 62510300 Helitron3Na_Mam 445 + 395 429 226499 34 chain 17194 chr12 133851895 + 62541541 62541841 L1PA17 2846 + 2406 2693 135051 95 4 0 16 1 0 4 12 11 46 17 13 9 1 0 32 1 0 18 9 8 35 chain 147659 chr12 133851895 + 62548669 62553632 L1PB1 5432 + 3405 5424 24929 7 0 1 87 0 1 225 13 12 191 0 3 149 0 1 68 0 1 475 3 0 476 2 3 9 10 0 20 1 0 13 16 11 9 2 0 53 2 1 16 1 0 3 2907 0 41 1 0 15 1 0 4 18 8 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4183 chr12 133851895 + 62550539 62550635 L1PB1 5432 + 5311 5400 204784 16 8 5 14 7 5 19 1 0 21 1 0 9 chain 16611 chr12 133851895 + 62554993 62555295 L1PB4 2604 + 2244 2552 136634 35 21 23 11 0 1 58 8 6 33 8 9 54 14 18 60 chain 3011 chr12 133851895 + 62576298 62576333 MER5A1 166 + 47 82 224812 35 chain 15886 chr12 133851895 + 62596402 62596599 L1PA8A 6298 - 3069 3267 138693 19 0 1 178 chain 23089 chr12 133851895 + 62607975 62608308 THE1B 368 + 2 368 115202 42 10 39 85 1 0 24 4 0 50 0 1 58 2 0 8 0 10 49 chain 24005 chr12 133851895 + 62614606 62614913 AluY 311 + 0 311 110301 42 1 0 33 0 1 47 4 5 44 0 3 136 chain 6156 chr12 133851895 + 62617902 62618029 L1MB3 1562 + 1238 1364 183926 78 36 35 13 chain 7516 chr12 133851895 + 62662715 62662840 L1MB8 1703 - 115 238 174063 73 15 14 19 1 0 17 chain 4456 chr12 133851895 + 62679358 62679414 L1PB4 2604 - 162 218 201278 56 chain 3392 chr12 133851895 + 62705147 62705253 MER58A 224 - 15 120 217262 33 54 53 19 chain 6548 chr12 133851895 + 62720339 62720513 MER46C 351 - 137 349 180864 23 8 17 64 62 91 17 chain 6084 chr12 133851895 + 62727903 62727978 U6 107 - 32 107 184543 75 chain 12635 chr12 133851895 + 62731048 62731219 THE1B 368 - 0 195 149709 143 5 29 23 chain 448650 chr12 133851895 + 62731258 62737028 L1PA8 5853 - 0 5803 8799 93 1 0 19 2 1 45 0 1 6 2 1 8 1 0 13 1 0 58 2 0 46 1 0 105 1 2 323 1 2 52 0 1 70 0 3 7 2 0 257 0 1 44 0 6 440 1 81 369 0 2 120 0 4 681 0 1 28 1 2 35 4 7 4 1 0 22 10 4 206 6 14 140 0 1 43 0 4 123 0 1 339 4 1 172 1 0 566 39 9 408 21 24 61 0 3 57 0 1 52 0 1 13 0 6 271 1 2 63 18 6 134 2 1 4 0 1 54 53 17 9 1 0 10 1 0 22 chain 335980 chr12 133851895 + 62758338 62762737 L1PA7 6471 - 1 4156 11999 9 6 0 253 0 3 115 0 1 292 0 4 21 3 1 98 0 4 48 1 0 695 0 1 25 2 4 513 0 1 455 1 2 21 0 15 86 290 1 106 0 15 170 1 0 14 1 0 185 0 2 579 0 1 66 8 12 19 2 0 125 0 4 49 1 0 133 0 1 6 chain 6821 chr12 133851895 + 62811965 62812044 LTR8 732 - 15 94 178784 79 chain 294334 chr12 133851895 + 62812387 62816305 L1PB1 5432 + 1405 5417 13745 145 0 1 123 1 3 25 17 0 14 0 15 80 1 0 84 1 0 318 26 134 147 9 1 347 1 0 12 8 11 26 0 3 125 1 0 78 0 1 95 0 1 538 1 0 603 0 5 151 2 1 134 3 0 79 0 2 87 0 8 50 21 17 234 2 3 8 1 0 24 1 0 9 1 0 9 7 3 10 2 0 47 9 8 12 1 0 44 1 0 16 25 12 19 8 5 14 13 25 19 4 3 11 1 0 13 chain 2871 chr12 133851895 + 62823338 62823370 L1M3 994 + 171 203 227513 32 chain 110800 chr12 133851895 + 62854177 62855578 LTR12C 1709 - 0 1709 34003 84 7 6 79 1 0 310 13 6 106 5 162 119 1 0 12 0 119 130 1 2 108 6 4 81 0 43 55 3 0 5 0 3 275 chain 76930 chr12 133851895 + 62856714 62857725 MER11A 1151 + 0 1151 45006 61 0 1 14 1 100 110 0 1 7 4 0 94 0 1 54 0 1 94 0 1 4 17 16 125 0 1 60 0 4 54 1 0 15 7 41 215 0 2 23 3 4 48 chain 12599 chr12 133851895 + 62882642 62882788 L1PA7 6471 + 6322 6468 149838 146 chain 29415 chr12 133851895 + 62886139 62886450 AluYb8 318 - 7 318 87003 311 chain 50446 chr12 133851895 + 62890546 62891096 L1PA3long 6157 + 5606 6149 58683 396 7 0 147 chain 22120 chr12 133851895 + 62905612 62905931 THE1B 368 - 20 368 119704 105 7 15 10 0 4 10 8 6 55 0 4 33 1 0 10 0 1 36 0 15 44 chain 36303 chr12 133851895 + 62907310 62908110 THE1B-int 1605 - 1087 1588 74501 61 0 25 63 335 8 205 0 3 136 chain 21322 chr12 133851895 + 62908137 62908469 THE1B 368 - 12 367 122791 102 46 56 144 0 15 26 2 0 12 chain 17798 chr12 133851895 + 62960464 62960671 L1PA4 6152 + 5938 6152 133414 70 0 1 29 0 1 102 0 5 6 chain 21651 chr12 133851895 + 62976161 62976490 HSMAR2 1300 + 910 1242 121569 130 0 11 9 41 32 59 0 1 90 chain 24017 chr12 133851895 + 63028355 63028638 AluSp 311 - 18 302 110232 185 0 1 98 chain 2845 chr12 133851895 + 63033932 63034018 LTR37B 484 - 380 469 227941 18 38 36 18 0 5 12 chain 3231 chr12 133851895 + 63082218 63082255 MADE1 96 + 59 96 220395 37 chain 4432 chr12 133851895 + 63089451 63089504 MER5B 177 - 124 177 201557 53 chain 3265 chr12 133851895 + 63103100 63103201 MamRep38 296 - 172 289 219692 28 8 6 18 32 50 15 chain 2737 chr12 133851895 + 63144335 63144402 L1MB7 1623 - 216 280 229653 23 24 21 20 chain 31191 chr12 133851895 + 63152550 63152969 LTR7B 505 + 0 492 82175 108 0 10 57 0 38 12 3 27 28 0 2 83 1 0 21 0 1 54 14 13 38 chain 29063 chr12 133851895 + 63198444 63198754 AluYa5 310 - 0 310 88706 310 chain 513774 chr12 133851895 + 63213586 63219670 L1PA6 6164 + 0 6162 5804 17 0 1 4 1 0 42 1 2 129 0 1 107 0 22 138 3 2 112 0 1 18 1 8 208 0 1 689 0 1 70 2 1 116 1 0 169 0 12 270 0 6 193 0 1 241 0 4 145 1 10 662 0 1 281 4 0 440 1 0 1108 0 1 56 0 5 23 0 8 78 1 0 72 6 9 69 0 3 605 chain 13669 chr12 133851895 + 63244518 63244678 U1 164 - 1 161 145708 160 chain 19838 chr12 133851895 + 63264528 63265132 L1MB7 1623 + 1061 1601 127685 32 0 1 24 2 1 5 0 1 62 20 10 4 0 1 7 3 0 14 4 0 23 12 2 17 2 0 3 2 0 17 41 38 14 8 6 32 1 0 24 46 42 10 4 1 27 1 0 11 10 9 20 3 0 5 52 36 37 1 0 4 chain 37733 chr12 133851895 + 63273089 63273543 L1PA6 6164 + 5702 6156 72511 454 chain 5004 chr12 133851895 + 63275068 63275128 MLT1E3 631 + 86 146 195104 60 chain 28696 chr12 133851895 + 63278698 63279052 THE1A 353 - 0 353 90343 243 2 1 109 chain 5366 chr12 133851895 + 63283381 63283449 L1MC 810 + 693 760 191346 37 1 0 30 chain 8644 chr12 133851895 + 63287579 63287678 MLT1B 390 - 283 383 167510 86 0 1 13 chain 94538 chr12 133851895 + 63289965 63291038 L1PA5 6144 + 5069 6142 38200 1073 chain 15754 chr12 133851895 + 63294119 63294310 L1PA5 6144 + 5936 6128 139096 57 1 2 133 chain 25744 chr12 133851895 + 63321157 63321472 AluSq 315 + 0 315 101109 315 chain 8572 chr12 133851895 + 63329480 63329579 HY3 101 + 0 99 167894 99 chain 7842 chr12 133851895 + 63347846 63347972 MER21A 919 - 771 917 172065 23 9 28 11 4 5 79 chain 35580 chr12 133851895 + 63360187 63360689 LTR10F 562 + 0 562 75436 170 14 66 14 0 2 5 3 8 13 14 13 258 0 2 11 chain 37916 chr12 133851895 + 63370962 63371495 LTR3B_ 500 - 0 500 72259 45 37 0 118 0 3 30 0 1 140 6 7 80 1 0 76 chain 38737 chr12 133851895 + 63395685 63396132 L1PA7 6471 - 12 461 71095 256 0 2 191 chain 11309 chr12 133851895 + 63402742 63402907 MER34C_ 573 + 410 573 155035 26 1 0 55 2 4 24 4 1 53 chain 28669 chr12 133851895 + 63423124 63423779 THE1C-int 1605 - 0 360 90456 72 295 0 288 chain 289962 chr12 133851895 + 63424105 63427399 L1PA5 6144 - 3 3337 14020 151 7 8 170 0 1 449 2 31 30 0 4 405 0 3 260 2 1 280 0 4 1180 1 0 357 chain 4171 chr12 133851895 + 63450264 63450386 L1MB2 1706 - 129 250 204960 4 1 0 33 53 53 31 chain 51260 chr12 133851895 + 63504502 63505116 L1PA7 6471 - 12 628 58150 167 9 11 438 chain 20892 chr12 133851895 + 63524977 63525335 THE1B 368 - 0 368 124308 125 5 4 9 1 0 4 6 17 9 1 0 4 2 4 12 2 0 5 4 6 76 25 25 68 chain 17525 chr12 133851895 + 63533607 63533819 L1P1 4361 - 372 583 132799 73 2 1 137 chain 96309 chr12 133851895 + 63533819 63534892 L1PA4 6152 + 5069 6143 37729 284 0 1 789 chain 8238 chr12 133851895 + 63548544 63548636 MER4A 717 + 303 395 169740 92 chain 227119 chr12 133851895 + 63559287 63562178 L1P2 5180 - 2283 5178 17482 1306 1 0 504 0 3 53 0 1 75 0 25 125 0 1 12 1 0 5 8 7 265 1 0 8 15 14 118 5 0 18 12 33 9 6 0 3 15 0 60 6 5 97 8 7 24 21 7 110 chain 94478 chr12 133851895 + 63567566 63568646 L1PA5 6144 - 8 1090 38212 138 4 6 938 chain 39030 chr12 133851895 + 63569219 63569728 THE1C-int 1605 + 0 515 70693 12 4 3 28 2 1 114 0 1 281 9 16 59 chain 108358 chr12 133851895 + 63572586 63574130 THE1B-int 1605 + 0 1605 34600 13 1 3 159 0 1 4 5 37 215 10 35 124 0 3 196 11 112 13 101 0 158 3 2 100 2 1 417 1 0 6 0 1 5 chain 5600 chr12 133851895 + 63581576 63581805 L1M3 994 - 627 923 189078 69 136 204 19 1 0 4 chain 221355 chr12 133851895 + 63583404 63585885 L1PA4 6152 + 3657 6138 17792 248 1 0 2089 0 1 143 chain 438885 chr12 133851895 + 63590010 63596129 L1PA6 6164 + 3 6148 9086 59 3 11 103 7 0 9 23 25 105 297 101 33 19 0 55 34 24 18 48 264 172 7 6 226 0 13 283 45 44 771 0 1 863 0 1 239 2 0 6 0 13 95 1 2 80 16 17 63 0 1 145 3 1 328 9 10 167 6 10 206 11 12 56 3 2 1188 1 2 182 0 1 132 chain 31054 chr12 133851895 + 63596149 63596532 L1PA7 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3 4 22 1 2 97 2 0 4 0 1 505 3 1 468 4 0 11 0 4 33 0 1 159 0 2 416 24 26 105 0 4 396 0 3 50 0 1 117 0 4 44 0 1 611 5 0 9 chain 18834 chr12 133851895 + 63748297 63748514 L1PA5 6144 + 5921 6137 130562 74 1 0 142 chain 23367 chr12 133851895 + 63756176 63756473 L1PA16 3655 - 81 376 113832 283 2 0 12 chain 373565 chr12 133851895 + 63760184 63765033 L1PA8 5853 - 0 4848 10974 91 5 4 17 2 1 52 12 10 10 0 1 5 1 0 53 2 0 45 1 0 506 4 1 46 0 2 6 1 0 4 8 5 111 15 9 549 4 5 419 1 2 513 3 0 171 0 1 18 18 32 172 0 1 71 0 1 4 1 0 112 1 0 18 1 3 120 9 11 319 15 9 6 0 6 53 1 2 65 14 17 15 3 1 634 11 12 152 12 7 143 5 6 199 chain 376669 chr12 133851895 + 63771581 63776610 L1PA7 6471 + 5 6469 10858 47 0 11 116 4 4 52 44 52 116 3 0 9 5 0 61 1 0 16 4 387 334 0 4 38 23 58 61 1 2 144 12 77 390 0 6 72 2 1 285 153 0 270 3 806 60 1 2 48 5 4 297 4 5 165 3 0 4 0 1 118 0 1 410 16 0 10 0 291 463 2 0 28 0 15 9 15 0 266 0 3 229 0 2 111 0 2 168 0 2 331 chain 28930 chr12 133851895 + 63783528 63783971 MER51B 395 + 0 384 89330 148 60 0 81 6 7 148 chain 46265 chr12 133851895 + 63790842 63791399 L1PA7 6471 - 4 562 61802 10 3 0 129 0 3 193 0 1 222 chain 48572 chr12 133851895 + 63792866 63793503 LTR14B 630 - 0 630 60056 78 4 12 136 1 0 4 7 9 165 16 0 204 1 0 4 0 1 17 chain 8770 chr12 133851895 + 63812714 63812860 MER34C_ 573 - 111 267 166815 26 1 5 69 14 20 36 chain 45993 chr12 133851895 + 63812878 63813470 LTR10F 562 + 0 562 62047 140 28 0 91 12 9 286 0 1 35 chain 1726 chr12 133851895 + 63813018 63813046 LTR10F 562 + 168 196 172146 28 chain 56253 chr12 133851895 + 63820304 63820969 THE1B-int 1605 - 0 665 54994 665 chain 26408 chr12 133851895 + 63820994 63821352 THE1A 353 + 0 353 98381 109 2 1 81 11 7 155 chain 372518 chr12 133851895 + 63827946 63832216 L1PA4 6152 + 9 6139 11011 572 0 3 5 3 0 94 0 3 596 0 1 918 0 2 61 0 1 58 0 1854 831 1 0 1131 chain 11950 chr12 133851895 + 63837233 63837365 L1PA3long 6157 + 6025 6157 152410 132 chain 48342 chr12 133851895 + 63837729 63838307 L1PA8A 6298 - 7 585 60212 578 chain 253645 chr12 133851895 + 63853566 63857466 L1PB1 5432 + 59 5424 16047 78 0 1 248 7 11 67 0 1 152 2 1 9 369 60 69 1 0 638 1 0 8 2 0 6 17 12 140 1 2 75 10 3 365 10 1847 314 1 5 257 0 2 61 0 2 5 2 0 78 0 1 44 3 0 183 4 12 14 45 5 179 1 6 26 0 1 5 1 0 51 1 2 8 4 1 24 0 3 6 17 12 10 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 8 0 14 9 6 13 3 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 33846 chr12 133851895 + 63878432 63878886 L1PA8 5853 + 5409 5853 77859 79 2 0 4 3 0 72 1 0 44 2 0 71 1 0 7 6 7 15 1 0 32 2 1 19 1 0 10 0 1 82 chain 453892 chr12 133851895 + 63881901 63887600 L1PA8 5853 - 6 5699 8619 85 5 4 14 1 0 56 13 11 69 2 0 46 1 0 66 3 7 400 0 5 65 0 1 8 2 0 389 6 5 557 0 8 268 0 1 315 1 0 106 25 0 139 23 1 283 0 4 288 3 0 17 0 4 7 5 1 131 6 21 150 0 1 12 1 4 20 0 4 11 13 14 223 0 1 497 1 0 112 0 1 452 1 2 156 1 4 372 6 7 113 0 4 14 2 0 137 chain 22447 chr12 133851895 + 63890549 63890941 L1PA15 4387 + 3922 4304 118268 10 1 0 91 27 28 49 5 4 27 1 0 39 0 1 13 2 1 22 4 0 11 1 0 42 13 10 34 chain 18792 chr12 133851895 + 63892763 63893006 L1MA8 2339 + 1203 1444 130701 44 3 1 196 chain 5714 chr12 133851895 + 63910794 63910880 L1PB1 5432 + 4717 4801 187979 40 11 9 35 chain 28224 chr12 133851895 + 63910948 63911622 L1PB1 5432 + 4868 5302 92212 233 239 13 24 13 11 7 2 0 3 2 0 10 4 2 49 2 1 14 2 1 41 5 4 15 3 0 6 chain 4952 chr12 133851895 + 63911638 63911726 L1PB1 5432 + 5308 5391 195679 19 3 1 4 1 0 14 2 0 45 chain 2093 chr12 133851895 + 63911727 63911755 L1PB1 5432 + 5391 5418 237678 13 1 0 14 chain 3680 chr12 133851895 + 63917897 63917942 MADE1 96 + 51 96 212222 45 chain 34751 chr12 133851895 + 63952065 63952519 L1PA8 5853 - 0 438 76543 93 1 0 19 2 1 52 11 1 8 1 0 70 2 0 45 1 0 149 chain 11521 chr12 133851895 + 63982018 63982188 Tigger1 2417 + 1097 1265 154212 59 13 10 72 1 2 25 chain 145549 chr12 133851895 + 63985992 63987583 L1PA3long 6157 + 4569 6157 25246 1583 3 0 5 chain 535208 chr12 133851895 + 64021861 64027999 L1PA4 6152 + 1 6152 3570 3245 0 4 1260 0 1 659 0 1 56 0 1 512 1 2 399 0 5 6 chain 506667 chr12 133851895 + 64028108 64034143 L1PA5 6144 + 0 6142 6423 120 4 18 18 0 12 986 0 3 12 9 0 254 0 9 374 7 8 384 0 1 99 27 19 750 0 74 216 2 5 52 0 1 758 0 1 221 0 5 647 0 5 242 1 0 688 18 18 135 4 0 7 chain 10204 chr12 133851895 + 64041216 64041336 L1PA5 6144 + 5779 5899 159606 120 chain 26259 chr12 133851895 + 64045952 64046410 L1PA15 4387 + 3901 4352 98980 31 1 0 25 12 25 122 2 1 25 1 0 54 4 3 20 4 0 8 1 0 47 0 1 4 10 7 18 3 0 14 0 1 4 28 21 20 chain 69946 chr12 133851895 + 64065328 64066109 L1PA5 6144 - 6 788 48412 401 0 1 380 chain 16947 chr12 133851895 + 64068235 64068471 MER75B 242 - 7 240 135738 9 1 0 10 1 0 159 4 1 24 1 3 27 chain 130240 chr12 133851895 + 64079903 64081368 SVA_D 2077 + 0 2066 28032 542 0 40 268 0 558 320 0 3 335 chain 3981 chr12 133851895 + 64149804 64149851 MIR 256 + 97 144 207663 47 chain 39380 chr12 133851895 + 64164246 64164857 LTR10E 629 - 0 629 70200 7 1 0 52 40 36 158 1 0 41 12 11 27 1 27 96 19 16 96 0 1 49 1 2 10 chain 46317 chr12 133851895 + 64170008 64170848 L1MA3 4352 + 3570 4230 61756 329 1 0 129 148 0 40 81 51 60 1 0 51 chain 4955 chr12 133851895 + 64197572 64197631 MER20 218 + 2 61 195647 59 chain 18447 chr12 133851895 + 64202997 64203280 Tigger3b 1229 + 9 295 131651 95 39 36 69 0 6 80 chain 2853 chr12 133851895 + 64209594 64209633 MER96B 391 + 247 285 227822 22 1 0 16 chain 112197 chr12 133851895 + 64212490 64214293 L1M1 2793 + 859 2685 33612 34 118 114 69 14 8 25 1 5 54 11 10 44 9 10 18 4 0 19 8 0 86 0 4 303 4 2 159 0 32 24 2 1 172 1 3 51 0 3 94 11 10 62 1 2 7 0 4 17 0 1 83 8 0 51 2 1 80 9 11 41 0 5 23 4 6 21 9 8 38 1 0 11 chain 9450 chr12 133851895 + 64224021 64224150 LTR8A 794 - 110 236 163311 120 3 0 6 chain 55499 chr12 133851895 + 64224150 64225243 L1P3 4156 + 3326 4139 55414 59 1 5 17 0 4 57 0 2 5 2 0 97 1 13 88 299 2 57 4 0 189 1 2 5 1 0 20 0 2 33 15 16 102 23 21 17 chain 59229 chr12 133851895 + 64288254 64288948 L1PA5 6144 - 0 689 53263 146 4 5 329 6 0 209 chain 20533 chr12 133851895 + 64323653 64323894 L1PA8A 6298 + 5509 5750 125536 241 chain 18685 chr12 133851895 + 64339048 64339275 L1PA7 6471 - 1 229 130980 12 1 2 214 chain 4494 chr12 133851895 + 64390875 64390931 Tigger3c 601 - 181 237 200860 56 chain 19068 chr12 133851895 + 64418415 64418765 THE1D 372 - 0 372 129913 81 13 16 37 17 33 12 2 0 4 3 0 8 7 15 75 8 12 5 3 0 28 3 0 31 0 2 13 chain 25377 chr12 133851895 + 64443075 64443425 THE1C 375 - 20 375 102798 142 25 30 183 chain 22741 chr12 133851895 + 64448516 64448766 L1PA2 6032 - 0 250 116864 250 chain 18468 chr12 133851895 + 64448766 64448980 L1P1 4361 + 4116 4328 131587 34 1 0 155 1 0 23 chain 45873 chr12 133851895 + 64468789 64469301 MER9a2 513 - 0 513 62149 379 0 1 133 chain 32985 chr12 133851895 + 64522919 64523344 MLT2A1 477 - 14 477 79240 41 3 37 208 5 9 168 chain 457644 chr12 133851895 + 64523344 64529573 HERVL-int 5654 - 0 5654 8485 74 0 3 35 17 16 68 1 0 95 0 3 27 7 17 35 0 3 52 33 6 300 10 17 22 0 1 452 0 1 180 0 2 327 0 4 340 0 37 32 0 4 219 300 0 1100 2 3 686 25 0 124 308 0 49 0 13 121 9 0 698 54 57 166 10 4 178 0 10 73 chain 100013 chr12 133851895 + 64533245 64534329 L1PA2 6032 - 726 1810 36773 1084 chain 66810 chr12 133851895 + 64534329 64535065 L1PA2 6032 + 5296 6032 49724 570 1 6 6 5 0 154 chain 203890 chr12 133851895 + 64557328 64559954 L1PA10 4194 + 1528 4161 18932 102 6 18 109 4 5 169 1 2 65 1 0 25 5 2 192 0 3 257 2 1 184 1 0 88 0 1 59 0 2 101 1 0 42 5 0 145 6 5 23 5 1 931 10 19 26 3 2 9 3 0 34 1 0 11 chain 558592 chr12 133851895 + 64589367 64595398 L1PA2 6032 + 0 6032 444 482 0 1 5549 chain 17031 chr12 133851895 + 64600433 64600773 L1MB2 1706 + 1342 1675 135510 34 1 0 27 0 1 143 107 100 28 chain 9608 chr12 133851895 + 64618634 64618753 L1PA7 6471 + 6345 6470 162546 79 0 8 29 2 0 9 chain 4602 chr12 133851895 + 64625434 64625608 MER3 215 - 132 207 199590 11 93 0 7 7 0 26 0 1 30 chain 4730 chr12 133851895 + 64638292 64638353 L1PA2 6032 - 6 68 198165 57 0 1 4 chain 11290 chr12 133851895 + 64640034 64640257 L1MB8 1703 - 42 232 155087 36 5 0 7 60 31 39 0 1 76 chain 4101 chr12 133851895 + 64649743 64649816 L1MB2 1706 + 1395 1471 205924 8 1 0 28 11 15 25 chain 13131 chr12 133851895 + 64650636 64650807 AluY 311 + 128 305 147718 127 6 12 38 chain 14118 chr12 133851895 + 64672275 64672789 L1MA8 2339 - 6 435 144145 30 76 46 10 0 2 32 75 65 27 65 41 33 20 0 37 3 2 35 13 15 24 2 0 6 2 0 24 chain 6514 chr12 133851895 + 64674685 64674765 MLT1E1A 663 + 583 663 181133 80 chain 561935 chr12 133851895 + 64681129 64687157 L1PA2 6032 - 2 6031 295 1986 0 1 4042 chain 167513 chr12 133851895 + 64691176 64693158 L1PA7 6471 - 4 2000 22333 57 6 14 74 12 12 86 4 0 86 0 2 436 0 2 80 1 4 688 1 0 48 1 0 285 2 0 18 0 1 85 0 6 12 chain 50158 chr12 133851895 + 64694912 64695565 PABL_B 668 + 0 668 58900 412 22 6 51 1 3 87 0 28 41 1 2 38 chain 5050 chr12 133851895 + 64695565 64695645 THE1D 372 + 293 372 194638 13 1 0 5 0 1 27 4 3 30 chain 38193 chr12 133851895 + 64704501 64704935 L1PA5 6144 - 0 435 71845 42 0 1 392 chain 61896 chr12 133851895 + 64713367 64714123 LTR17 781 + 0 781 51947 120 0 1 162 0 1 43 12 13 374 6 28 39 chain 58806 chr12 133851895 + 64723318 64723971 L1PA3long 6157 - 10 664 53523 594 0 1 59 chain 31091 chr12 133851895 + 64733793 64734191 MLT2A1 477 - 80 477 82362 192 1 2 23 0 1 7 4 1 171 chain 467908 chr12 133851895 + 64734191 64739855 HERVL-int 5654 - 0 5653 8114 429 0 1 515 0 2 188 2 3 633 17 2 16 0 1 317 0 6 273 0 3 700 0 1 198 10 8 165 7 15 87 1 0 4 0 1 528 1 4 639 1 0 16 1 6 18 0 5 26 7 6 47 24 0 142 2 1 374 28 22 73 0 3 175 chain 33054 chr12 133851895 + 64739856 64740300 MLT2A1 477 - 0 477 79132 53 5 39 88 1 2 90 0 1 33 6 3 168 chain 54591 chr12 133851895 + 64742888 64744044 L1PB1 5432 + 4553 5404 55973 70 1 2 111 1 0 6 0 1 65 0 7 84 0 2 202 0 14 21 1 13 7 4 0 9 2 0 53 19 17 42 317 3 14 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 chain 40957 chr12 133851895 + 64750140 64750637 LTR10A 586 - 49 586 67969 266 10 49 147 0 1 74 chain 33249 chr12 133851895 + 64755083 64755500 MER41A 554 + 12 424 78803 90 5 0 322 chain 11576 chr12 133851895 + 64768678 64768837 HSMAR1 1287 + 0 165 154005 107 12 18 40 chain 13959 chr12 133851895 + 64787460 64787653 MER30 238 + 37 238 144711 42 0 1 27 4 14 78 3 0 39 chain 23640 chr12 133851895 + 64791419 64791700 AluSg7 307 - 15 297 112356 160 0 1 121 chain 8547 chr12 133851895 + 64818237 64818342 L1PA7 6471 - 4 108 168034 72 1 0 32 chain 4018 chr12 133851895 + 64832717 64832768 MIR 256 - 121 172 207098 51 chain 7195 chr12 133851895 + 64832768 64832852 L1PA7 6471 + 6375 6459 176103 84 chain 25381 chr12 133851895 + 64840678 64841040 THE1B 368 - 0 368 102776 61 16 20 114 2 1 130 0 5 24 3 1 12 chain 23960 chr12 133851895 + 64856879 64857173 AluY 311 + 10 296 110563 185 7 0 12 1 0 89 chain 6892 chr12 133851895 + 64937508 64937645 LTR12C 1709 + 936 1032 178251 81 42 1 14 chain 19113 chr12 133851895 + 64939671 64939903 AluY 311 + 78 310 129782 232 chain 16391 chr12 133851895 + 64992518 64992715 L1PA5 6144 - 0 195 137234 11 3 1 183 chain 23987 chr12 133851895 + 64999387 64999688 AluSp 311 + 0 303 110400 138 6 7 113 4 5 40 chain 13827 chr12 133851895 + 65027446 65027633 MSTB-int 1649 + 0 191 145154 14 0 1 118 1 0 28 1 5 25 chain 20715 chr12 133851895 + 65028254 65028722 HSMAR2 1300 - 976 1258 124917 82 1 4 55 190 0 36 0 1 104 chain 21756 chr12 133851895 + 65059264 65059527 MER66A 478 + 7 289 121190 20 0 20 180 1 0 62 chain 25994 chr12 133851895 + 65076060 65076367 AluY 311 + 0 303 100039 10 9 0 118 0 5 170 chain 23902 chr12 133851895 + 65080120 65080398 AluY 311 + 9 290 110902 22 0 1 99 0 2 157 chain 23357 chr12 133851895 + 65098131 65098418 AluSp 311 - 17 301 113890 10 2 0 177 1 0 97 chain 24422 chr12 133851895 + 65099506 65099803 AluSq2 311 + 0 295 107960 125 6 4 166 chain 7024 chr12 133851895 + 65121241 65121453 L1MB8 1703 + 1323 1545 177295 42 0 7 31 108 111 31 chain 15848 chr12 133851895 + 65134843 65135009 AluYa5 310 + 138 304 138805 166 chain 25830 chr12 133851895 + 65152091 65152402 AluSc 308 - 0 308 100746 29 1 0 147 2 0 132 chain 41954 chr12 133851895 + 65155120 65155685 MER41A 554 + 0 554 66681 93 1 2 33 25 13 113 1 0 143 0 1 156 chain 11578 chr12 133851895 + 65178492 65178644 L1PA8 5853 + 5701 5853 153989 39 2 1 19 1 0 42 0 2 49 chain 186267 chr12 133851895 + 65196279 65198399 L1PA5 6144 - 0 2131 20396 154 7 8 688 1 0 666 1 0 30 0 8 242 0 4 331 chain 7482 chr12 133851895 + 65203269 65203372 L1PB2 3958 - 140 240 174256 43 2 1 21 2 0 35 chain 117731 chr12 133851895 + 65238615 65242056 L1MA3 4352 - 331 3994 31883 117 2 0 169 23 24 27 2 0 120 3 5 20 0 1 33 1669 1895 81 2 1 148 15 15 57 1 0 42 0 1 6 1 2 31 1 6 110 1 0 29 1 0 5 1 0 50 1 0 5 0 1 144 1 0 8 1 0 90 7 5 58 14 12 116 1 0 108 1 3 57 1 0 61 chain 468552 chr12 133851895 + 65242056 65247730 L1PA7 6471 - 1 6471 8091 842 0 2 7 3 0 350 0 2 42 0 1 177 2 1 20 0 1 223 0 1 427 3 0 161 0 2 398 0 4 306 2 0 52 77 822 50 1 2 141 0 5 192 0 4 182 1 3 101 0 1 222 0 16 171 6 24 585 0 2 5 6 4 919 chain 6669 chr12 133851895 + 65245071 65245148 L1P3 4156 + 3947 4024 176144 77 chain 12786 chr12 133851895 + 65277857 65277995 L1PA5 6144 + 6004 6142 149109 138 chain 9935 chr12 133851895 + 65311121 65311250 MER85 139 - 0 139 160903 40 0 10 89 chain 4740 chr12 133851895 + 65314158 65314259 MER5A 189 - 51 153 198015 38 30 31 33 chain 9601 chr12 133851895 + 65325029 65325179 L1PBa 3878 - 3338 3487 162592 18 1 0 14 2 1 72 11 12 32 chain 30091 chr12 133851895 + 65336088 65336406 AluYb8 318 + 0 318 84520 318 chain 269769 chr12 133851895 + 65354936 65358809 L1PA11 4918 - 430 4909 15193 14 2 0 58 4 8 13 1 0 11 1 4 44 0 3 27 0 1 4 8 7 65 4 34 16 0 1 304 10 11 13 319 8 50 5 12 291 1 4 358 0 4 106 6 0 442 0 1 34 2 0 329 1 0 384 8 14 266 4 0 308 0 4 71 0 2 34 0 1 67 6 879 53 2 0 13 1 0 36 4 1 36 2 0 27 2 0 6 chain 22415 chr12 133851895 + 65361477 65361742 AluY 311 + 29 293 118405 104 1 0 160 chain 5613 chr12 133851895 + 65366285 65366345 L1HS 6032 - 2 62 188943 60 chain 20100 chr12 133851895 + 65367997 65368252 AluSg 306 + 32 288 126825 202 10 11 43 chain 324402 chr12 133851895 + 65371578 65375384 L1PA6 6164 - 10 3837 12424 137 14 14 454 5 6 234 0 1 143 0 5 605 0 4 183 1 9 1183 2 0 746 0 4 99 chain 37428 chr12 133851895 + 65384006 65384468 LTR2 463 + 0 463 72925 360 14 15 88 chain 36155 chr12 133851895 + 65387974 65388435 LTR2 463 + 0 463 74704 368 0 1 11 17 18 65 chain 38374 chr12 133851895 + 65394370 65394802 SVA_A 1864 - 3 432 71611 9 3 0 420 chain 19444 chr12 133851895 + 65397691 65397926 L1PA4 6152 - 0 245 128839 13 0 3 52 0 1 14 3 9 153 chain 42832 chr12 133851895 + 65421757 65422384 L1PA16 3655 - 998 1639 65612 47 61 75 141 0 1 179 0 3 178 4 0 17 chain 511946 chr12 133851895 + 65424252 65430361 L1PA5 6144 - 9 6144 5980 716 0 1 7 5 12 571 0 2 125 1 2 156 12 15 105 6 7 909 4 7 192 10 4 1943 5 13 177 9 0 1037 1 15 4 0 1 114 chain 6211 chr12 133851895 + 65430376 65430468 L1PA16 3655 - 3509 3600 183492 16 6 5 70 chain 30003 chr12 133851895 + 65485845 65486199 L1PA7 6471 + 6090 6447 84798 252 0 1 7 0 2 95 chain 9270 chr12 133851895 + 65489528 65489635 U6 107 + 0 107 164219 107 chain 94632 chr12 133851895 + 65489635 65490802 L1PA8 5853 + 4682 5847 38177 325 0 2 266 1 0 245 0 1 43 1 0 44 2 0 70 2 1 44 3 5 12 2 1 19 1 0 87 chain 18891 chr12 133851895 + 65605749 65606102 THE1B 368 - 0 368 130392 39 0 1 48 0 5 32 40 55 19 1 0 33 4 0 19 19 13 22 4 5 24 0 6 34 2 0 13 chain 5297 chr12 133851895 + 65659715 65659880 MER50 708 + 450 601 192043 33 1 0 7 85 72 39 chain 14845 chr12 133851895 + 65680530 65680824 AluJr 308 + 16 308 141791 31 6 7 48 79 77 105 1 0 24 chain 15417 chr12 133851895 + 65726248 65726426 L1PA5 6144 + 5966 6144 140143 178 chain 430446 chr12 133851895 + 65739362 65748420 L1PA4 6152 - 0 4919 9300 260 1 0 109 2 0 1023 0 1 818 0 1 654 1 0 455 4138 0 1348 0 2 100 1 0 148 chain 132657 chr12 133851895 + 65742689 65744137 L1PA2 6032 - 1 1450 27454 13 0 1 1435 chain 242185 chr12 133851895 + 65744137 65746815 L1HS 6032 + 1910 4587 16663 2633 2 1 43 chain 22959 chr12 133851895 + 65770345 65770614 L1PA7 6471 + 6195 6463 115811 262 1 0 6 chain 539791 chr12 133851895 + 65791390 65797839 L1PA7 6471 - 3 6466 2850 7 2 0 145 2 0 5 1 3 437 1 0 246 0 2 236 0 1 49 1 0 59 4 5 281 0 1 313 0 4 188 0 1 649 7 0 339 1 0 354 0 1 508 0 2 367 1 0 649 2 1 109 0 1 69 0 1 120 0 7 66 3 7 285 0 1 214 1 0 331 0 1 10 0 1 109 0 1 4 5 4 269 chain 35667 chr12 133851895 + 65815635 65816135 L1PREC2 3366 + 202 697 75308 7 1 0 23 1 0 12 2 1 8 2 1 4 1 0 31 1 0 111 1 0 70 2 1 35 1 4 187 chain 4482 chr12 133851895 + 65837329 65837389 MLT1A 405 - 48 108 200991 60 chain 32255 chr12 133851895 + 65851007 65851367 L1PA7 6471 - 6 366 80432 360 chain 5274 chr12 133851895 + 65869792 65869852 L1PB4 2604 - 61 121 192270 60 chain 5526 chr12 133851895 + 65876875 65876936 THE1D 372 + 311 372 189784 61 chain 6926 chr12 133851895 + 65880295 65880396 THE1B 368 + 268 368 177993 38 7 6 56 chain 539284 chr12 133851895 + 65943200 65949520 L1PA3long 6157 - 11 6157 2931 610 1 0 274 4 0 1537 0 1 2815 0 128 108 1 21 70 0 4 262 327 0 30 1 5 127 0 1 153 chain 27996 chr12 133851895 + 65948902 65949198 AluYa5 310 - 14 310 93012 296 chain 43272 chr12 133851895 + 65955779 65956393 MER41B 635 + 0 614 65088 125 1 2 248 14 13 5 0 1 57 32 31 132 chain 116227 chr12 133851895 + 65973746 65975423 L1PB1 5432 + 3756 5421 32365 323 5 15 76 0 1 26 9 7 115 0 2 148 0 4 151 5 0 79 0 2 34 0 6 66 0 1 286 19 19 21 1 0 8 19 14 8 2 0 52 2 1 15 1 0 44 1 0 12 49 35 5 1 0 14 2 0 27 1 0 19 1 0 12 1 0 17 chain 25020 chr12 133851895 + 65978247 65978508 AluYa5 310 + 49 310 104683 261 chain 3485 chr12 133851895 + 66001763 66001802 MLT1J2 417 + 243 282 215598 39 chain 7647 chr12 133851895 + 66006090 66006184 L1PA7 6471 - 11 107 173245 59 0 2 35 chain 34488 chr12 133851895 + 66032869 66033330 LTR2 463 - 0 463 76927 64 36 37 131 0 5 11 5 0 156 0 1 58 chain 11075 chr12 133851895 + 66037911 66038055 LTR45B 484 - 149 294 155914 67 5 6 72 chain 14631 chr12 133851895 + 66058087 66058319 MER1B 344 - 5 240 142485 24 46 49 162 chain 5998 chr12 133851895 + 66063996 66064067 MER96B 391 - 216 287 185262 71 chain 24428 chr12 133851895 + 66080751 66081353 L1MA6 2487 + 1860 2394 107928 67 1 0 45 11 13 18 1 0 16 23 25 19 12 9 153 180 116 38 3 0 15 chain 24069 chr12 133851895 + 66094659 66095090 L1MA5 2750 - 30 436 109931 17 98 72 14 5 7 46 1 0 181 1 0 6 0 1 62 chain 24880 chr12 133851895 + 66108323 66108618 AluY 311 + 16 309 105457 118 2 0 175 chain 4106 chr12 133851895 + 66117780 66117846 L1MA3 4352 + 4248 4310 205829 10 2 0 25 1 0 4 2 1 22 chain 19959 chr12 133851895 + 66118514 66118848 MSTA 426 + 9 390 127273 99 24 52 44 4 0 12 25 28 52 1 21 73 chain 124941 chr12 133851895 + 66137956 66139509 LTR12C 1709 + 0 1709 29413 256 2 3 79 0 43 83 0 1 135 10 11 39 0 119 68 1 0 77 0 2 196 1 0 4 4 2 106 11 4 481 chain 27142 chr12 133851895 + 66182967 66183361 MER57A1 433 + 13 410 95788 15 0 3 57 24 22 69 5 6 94 3 4 127 chain 23749 chr12 133851895 + 66188359 66188622 AluYf4 310 + 0 284 111784 236 0 21 27 chain 21971 chr12 133851895 + 66199481 66199758 AluY 311 + 0 287 120348 23 0 9 100 10 11 144 chain 26675 chr12 133851895 + 66207073 66207351 AluYb8 318 + 40 318 97408 278 chain 33261 chr12 133851895 + 66208813 66209448 L1PB1 5432 + 4836 5430 78784 18 0 2 146 16 17 84 3 2 12 17 0 17 1 0 12 1 0 9 8 4 9 3 1 46 1 4 11 7 6 34 10 9 15 26 17 11 2 0 10 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 23338 chr12 133851895 + 66229896 66230165 AluY 311 + 39 309 113989 93 0 1 176 chain 13678 chr12 133851895 + 66279670 66279866 MER41B 635 + 353 547 145678 67 1 0 31 16 15 81 chain 6875 chr12 133851895 + 66290917 66291015 L1MA3 4352 - 42 136 178393 22 1 0 5 1 0 24 2 0 43 chain 21207 chr12 133851895 + 66291457 66291760 AluSq2 311 + 0 300 123191 133 28 26 37 1 0 104 chain 59752 chr12 133851895 + 66307780 66308433 L1PA2 6032 + 5376 6029 52960 653 chain 28818 chr12 133851895 + 66314249 66314599 THE1A 353 + 0 349 89810 110 1 0 239 chain 128409 chr12 133851895 + 66314607 66316486 THE1A-int 1579 + 0 1574 28473 273 2 1 149 302 0 71 3 0 155 0 1 924 chain 3169 chr12 133851895 + 66316491 66316574 THE1A 353 + 0 84 221589 29 35 36 19 chain 16759 chr12 133851895 + 66316574 66316783 THE1A 353 + 85 293 136234 26 1 0 182 chain 5001 chr12 133851895 + 66316784 66316841 THE1A 353 + 296 353 195127 57 chain 74083 chr12 133851895 + 66367906 66368766 L1PA7 6471 - 1073 1938 46422 588 0 5 272 chain 83747 chr12 133851895 + 66368766 66369752 L1PA7 6471 + 5415 6454 42016 202 1 4 694 0 1 26 4 53 59 chain 7832 chr12 133851895 + 66372982 66373073 L1P2 5180 - 3868 3959 172109 91 chain 341966 chr12 133851895 + 66373216 66377140 L1PA5 6144 + 2203 6132 11832 29 1 2 11 0 2 98 14 6 566 0 1 245 8 7 114 0 1 397 1 3 571 0 1 484 0 6 930 0 1 303 6 6 45 1 0 100 chain 189772 chr12 133851895 + 66378333 66381334 MER57-int 2662 - 6 2622 20074 10 1 0 16 8 5 33 5 0 9 1 0 24 4 1 9 1 0 6 2 0 15 39 24 68 21 15 79 1 0 11 1 0 9 1 0 154 0 1 136 1 2 120 3 0 66 18 1 35 0 1 257 302 1 9 2 1 135 1 0 91 0 3 110 1 0 4 0 1 248 1 0 99 0 1 511 8 5 18 2 0 46 0 2 75 0 2 34 0 4 38 72 41 30 chain 23216 chr12 133851895 + 66463828 66464094 AluSp 311 - 34 300 114616 266 chain 9215 chr12 133851895 + 66464106 66464254 MER75 514 - 306 451 164482 16 0 1 4 13 12 80 3 0 32 chain 5074 chr12 133851895 + 66484957 66485034 MADE1 96 + 0 95 194368 24 7 25 46 chain 539769 chr12 133851895 + 66488223 66494650 L1PA5 6144 - 9 6144 2853 187 9 11 694 2 0 432 3 8 1586 305 0 53 0 1 532 0 1 82 0 1 239 1 2 72 0 1 449 0 1 350 0 1 1323 0 1 108 chain 9874 chr12 133851895 + 66510990 66511112 MER2 342 + 81 213 161206 54 0 3 35 0 7 33 chain 159394 chr12 133851895 + 66527740 66529861 SVA_F 1814 + 10 1814 23417 845 32 33 4 0 1 37 1 2 16 0 15 25 78 0 199 257 0 627 chain 1409 chr12 133851895 + 66528585 66528617 SVA_F 1814 + 905 937 102662 32 chain 2289 chr12 133851895 + 66528700 66528752 SVA_F 1814 + 1037 1089 102662 52 chain 2065 chr12 133851895 + 66528756 66528778 SVA_F 1814 + 1142 1164 155900 22 chain 8145 chr12 133851895 + 66528977 66529162 SVA_F 1814 + 1138 1245 102662 20 79 1 86 chain 3611 chr12 133851895 + 66528997 66529055 SVA_F 1814 + 1031 1089 133938 58 chain 2606 chr12 133851895 + 66529162 66529234 SVA_F 1814 + 1069 1138 120051 52 2 0 15 1 0 2 chain 4760 chr12 133851895 + 66536177 66536233 LTR40b 463 - 22 78 197812 56 chain 24298 chr12 133851895 + 66566030 66566332 AluSp 311 + 3 303 108665 88 0 3 203 5 0 6 chain 107711 chr12 133851895 + 66568223 66569511 SVA_A 1864 + 27 1864 34797 501 11 125 149 1 440 30 4 0 281 1 0 4 0 1 306 chain 32689 chr12 133851895 + 66578801 66579161 L1PA4 6152 + 5791 6151 79706 360 chain 25554 chr12 133851895 + 66606471 66606826 L1PA8 5853 + 5508 5853 101958 56 1 0 44 2 0 50 3 0 21 2 0 14 2 0 6 4 5 40 1 0 16 1 0 76 0 1 16 chain 29459 chr12 133851895 + 66614290 66614599 AluYa5 310 - 1 310 86801 309 chain 33056 chr12 133851895 + 66616625 66617077 LTR7 482 - 5 482 79126 44 13 14 122 2 33 14 1 0 135 21 15 100 chain 3790 chr12 133851895 + 66640497 66640539 MIRc 230 + 174 216 210519 42 chain 11288 chr12 133851895 + 66686702 66686887 MSTC 436 - 238 403 155093 41 0 8 68 33 5 43 chain 7336 chr12 133851895 + 66696787 66696865 LTR12C 1709 - 338 416 175190 78 chain 16077 chr12 133851895 + 66709757 66710027 Tigger3a 397 + 0 321 138127 20 23 27 27 16 65 30 2 0 152 chain 11021 chr12 133851895 + 66710246 66711049 MER30 238 - 1 192 156124 101 645 30 7 0 3 50 chain 3748 chr12 133851895 + 66734266 66734312 MLT2B3 573 - 0 46 211202 46 chain 33683 chr12 133851895 + 66734337 66734782 MLT2A1 477 - 0 477 78122 50 14 42 60 1 0 151 1 5 26 0 1 142 chain 24330 chr12 133851895 + 66738283 66738582 AluSp 311 - 1 300 108487 299 chain 259865 chr12 133851895 + 66805238 66808712 L1PA11 4918 + 8 4007 15710 6 1 0 28 2 0 37 9 6 30 1 0 10 16 14 42 1 0 32 2 0 5 2 1 132 8 8 63 0 1 77 3 4 246 1 0 486 4 0 102 12 13 57 15 42 362 1 2 30 0 1 135 0 509 220 2 0 268 0 1 150 1 0 4 0 3 15 2 0 82 0 4 424 1 0 28 1 2 6 1 0 311 chain 66656 chr12 133851895 + 66819024 66819762 L1PA4 6152 + 5412 6151 49807 291 0 1 447 chain 3742 chr12 133851895 + 66832804 66832851 L2a 937 - 164 211 211294 47 chain 436546 chr12 133851895 + 66867184 66872814 L1PA5 6144 + 589 6139 9150 106 88 64 57 17 34 104 50 26 32 204 196 96 139 144 1207 0 1 397 40 0 196 0 3 380 16 5 1279 0 1 337 1 2 555 2 1 327 chain 251334 chr12 133851895 + 66872888 66875879 L1PA7 6471 + 3497 6461 16152 339 1 0 261 0 1 370 0 1 200 1 9 614 0 1 159 37 1 139 8 7 862 chain 28227 chr12 133851895 + 66877641 66877938 AluYa5 310 - 13 310 92207 297 chain 291058 chr12 133851895 + 66881017 66884888 L1PA11 4918 + 776 4629 13955 35 5 7 171 2 0 26 3 0 174 6 7 218 0 1 5 4 8 384 1 2 37 1 2 174 1 2 4 1 0 71 0 1 155 0 4 87 1 0 426 5 1 175 0 10 254 0 1 82 1 0 65 0 1 12 14 0 286 16 17 453 1 16 181 1 0 44 0 1 20 1 0 11 2 0 65 2 0 16 1 0 16 48 35 15 1 0 13 2 0 11 47 33 18 chain 41091 chr12 133851895 + 66891556 66892006 LTR7 482 + 1 482 67775 263 0 31 187 chain 26363 chr12 133851895 + 66904779 66905138 THE1B 368 + 0 368 98563 169 1 0 29 35 45 125 chain 14451 chr12 133851895 + 66906002 66906177 THE1D-int 1627 + 12 185 143044 5 3 0 98 0 1 69 chain 542370 chr12 133851895 + 66915299 66921464 L1PA4 6152 + 3 6151 2452 12 0 1 426 5 6 132 1 0 254 34 0 308 1 7 988 0 1 407 0 1 637 1 0 1357 0 3 761 0 4 640 0 2 201 chain 59094 chr12 133851895 + 66922634 66923554 L1PB1 5432 + 4529 5415 53335 97 3 0 189 0 3 91 0 1 61 0 1 129 16 16 21 1 0 9 1 0 5 13 9 7 2 0 52 2 1 12 8 7 41 2 1 14 1 0 6 1 2 9 9 0 14 2 0 4 1 0 15 7 5 19 1 0 21 1 0 13 9 0 11 chain 279339 chr12 133851895 + 66957910 66961172 L1PA5 6144 - 3 3269 14672 12 1 0 831 1 5 665 1 0 273 0 4 306 0 1 56 0 1 55 1 2 125 1 0 135 8 5 142 19 10 244 0 8 386 chain 13867 chr12 133851895 + 66961172 66961328 L1PA5 6144 + 2703 2859 145013 156 chain 558678 chr12 133851895 + 66972048 66978189 L1PA3long 6157 + 0 6149 433 1190 0 3 1600 0 4 3210 0 1 141 chain 75637 chr12 133851895 + 66978882 66979697 L1PA2 6032 - 1 816 45691 815 chain 13115 chr12 133851895 + 66988179 66988373 MER30 238 + 37 231 147786 70 7 0 12 8 12 59 0 3 38 chain 4806 chr12 133851895 + 67030650 67030706 MLT1B 390 + 296 352 197279 56 chain 19855 chr12 133851895 + 67045941 67046289 THE1D 372 + 15 372 127640 26 15 6 115 59 72 92 3 8 38 chain 139808 chr12 133851895 + 67099086 67100758 L1PA8A 6298 + 4580 6292 26170 49 0 1 4 1 0 576 0 1 278 1 4 77 0 4 60 0 32 626 chain 7951 chr12 133851895 + 67102463 67102556 L1PA8 5853 - 0 93 171326 93 chain 5374 chr12 133851895 + 67125832 67125893 Tigger2b_Pri 1066 + 0 61 191269 61 chain 25975 chr12 133851895 + 67151895 67152251 THE1A 353 - 0 353 100116 155 1 0 88 1 0 21 0 1 5 14 12 71 chain 124061 chr12 133851895 + 67152256 67154093 THE1A-int 1579 - 5 1552 29680 412 0 1 134 3 12 286 0 8 223 4 3 229 4 3 76 306 0 160 chain 10218 chr12 133851895 + 67154117 67154275 THE1A 353 - 0 155 159521 31 24 21 103 chain 5542 chr12 133851895 + 67154281 67154346 THE1A 353 - 163 228 189643 65 chain 8836 chr12 133851895 + 67154364 67154473 THE1A 353 - 244 353 166461 109 chain 16425 chr12 133851895 + 67167010 67167195 L1PA7 6471 - 394 579 137135 185 chain 25451 chr12 133851895 + 67167196 67167494 L1PA7 6471 + 6169 6467 102452 298 chain 51297 chr12 133851895 + 67219617 67220236 L1PA7 6471 + 5838 6464 58112 28 0 1 281 5 11 305 chain 112005 chr12 133851895 + 67249865 67251113 L1PA4 6152 + 4853 6128 33665 1196 5 32 47 chain 21810 chr12 133851895 + 67268219 67268596 MSTA 426 - 0 380 120981 79 39 47 94 9 5 29 13 9 19 11 14 84 chain 42931 chr12 133851895 + 67323891 67324371 L1PA3long 6157 - 0 483 65502 11 1 4 468 chain 33395 chr12 133851895 + 67329353 67329782 MER57A1 433 - 0 433 78576 9 0 3 137 3 4 280 chain 62215 chr12 133851895 + 67379947 67380618 L1PA3long 6157 + 5486 6157 51792 671 chain 6455 chr12 133851895 + 67426316 67426486 MER20 218 - 6 177 181600 49 1 0 5 75 77 40 chain 26850 chr12 133851895 + 67443127 67443507 L1PA8 5853 + 5480 5853 96808 84 1 0 45 3 1 69 1 0 15 10 9 25 14 13 19 1 0 93 chain 32755 chr12 133851895 + 67458534 67458890 L1PA3long 6157 - 0 356 79607 356 chain 45807 chr12 133851895 + 67466030 67466578 L1PA7 6471 + 5919 6468 62223 394 0 1 154 chain 26061 chr12 133851895 + 67510813 67511109 L1PA2 6032 - 1 299 99788 75 0 1 114 0 1 107 chain 20780 chr12 133851895 + 67527979 67528258 L1PA8 5853 + 5562 5836 124678 9 0 1 37 2 0 70 1 0 14 7 6 41 2 1 19 1 0 76 chain 59294 chr12 133851895 + 67529639 67530278 L1PA2 6032 + 5393 6032 53228 639 chain 7027 chr12 133851895 + 67541138 67541260 MLT1E1A 663 - 0 128 177283 86 20 26 16 chain 12964 chr12 133851895 + 67547416 67547566 L1PA7 6471 - 206 355 148375 128 1 0 21 chain 310846 chr12 133851895 + 67570122 67573757 L1PA5 6144 + 2517 6143 12967 159 0 3 151 0 1 780 19 13 49 1 0 162 6 1 536 6 0 360 1 4 218 1 0 856 0 1 160 18 19 11 0 1 141 chain 26713 chr12 133851895 + 67597073 67597362 L1PA2 6032 - 2 291 97279 289 chain 470068 chr12 133851895 + 67619873 67625400 L1PA5 6144 - 4 5542 8031 11 6 0 132 2 0 6 9 11 686 1 0 1342 0 2 308 1 4 70 0 1 271 1 0 92 2 4 262 0 1 63 3 4 554 11 9 289 1 0 604 1 6 238 9 0 342 0 17 71 4 3 135 chain 47532 chr12 133851895 + 67640819 67641351 L1PA5 6144 - 689 1221 60821 532 chain 122616 chr12 133851895 + 67641352 67642724 L1PA5 6144 - 1221 2593 30189 1372 chain 55505 chr12 133851895 + 67642724 67643348 L1PA5 6144 + 5507 6131 55413 624 chain 28970 chr12 133851895 + 67649959 67650269 AluYf4 310 + 0 310 89133 310 chain 25497 chr12 133851895 + 67731418 67731772 THE1B 368 - 0 366 102237 75 2 1 26 0 1 63 2 0 28 6 5 114 0 15 38 chain 60241 chr12 133851895 + 67734492 67735176 SVA_B 1603 - 3 725 52711 146 0 1 84 0 1 367 0 40 35 4 0 48 chain 32912 chr12 133851895 + 67738619 67738989 L1PA5 6144 - 0 371 79350 147 0 1 223 chain 17042 chr12 133851895 + 67740899 67741109 MSTA-int 1630 + 0 213 135489 112 0 3 98 chain 11754 chr12 133851895 + 67750585 67750720 L1PA6 6164 - 10 145 153244 135 chain 27849 chr12 133851895 + 67774295 67774659 L1PA8 5853 - 0 357 93526 93 1 0 19 2 1 49 6 5 4 1 0 73 2 0 45 1 0 68 chain 373068 chr12 133851895 + 67799055 67803449 L1PA6 6164 + 1736 6154 10992 596 5 0 110 0 3 94 0 1 42 0 4 124 4 7 101 2 0 370 0 1 26 10 10 49 0 1 128 2 1 292 0 1 951 1 7 384 0 10 259 0 3 310 1 0 533 chain 42045 chr12 133851895 + 67814036 67814572 MER41A 554 - 10 554 66568 145 2 9 247 0 1 142 chain 40912 chr12 133851895 + 67815028 67815571 HSMAR1 1287 + 472 1016 68020 50 0 1 23 27 24 173 0 1 192 0 2 78 chain 12436 chr12 133851895 + 67815571 67815723 HSMAR1 1287 - 566 717 150511 8 1 0 143 chain 18137 chr12 133851895 + 67832683 67833026 THE1D 372 + 18 372 132501 142 31 78 13 37 0 43 21 22 56 chain 148263 chr12 133851895 + 67858854 67861577 L1MA1 4479 - 293 4459 24850 14 7 0 8 4 2 11 1 0 8 5 4 32 2 0 29 1 0 126 3 0 6 1 0 57 6 7 23 1 0 14 2 0 16 1 0 13 0 1 60 1 0 9 326 1866 447 0 2 311 1 12 5 0 2 46 0 1 44 0 3 63 0 1 148 6 10 40 1 9 54 0 1 241 1 5 16 0 2 59 10 0 80 7 5 45 290 187 21 chain 41426 chr12 133851895 + 67882449 67883307 THE1C-int 1605 - 1062 1605 67385 86 325 12 192 2 1 237 2 1 14 chain 3350 chr12 133851895 + 67907948 67908006 MIRc 230 - 89 147 218044 8 3 0 34 0 4 4 1 0 8 chain 20548 chr12 133851895 + 67912146 67912389 AluSc 308 + 57 302 125475 204 0 2 39 chain 527136 chr12 133851895 + 67943499 67949965 L1PA7 6471 - 3 6471 4484 159 0 1 177 2 1 64 0 1 95 12 10 342 0 4 8 0 4 691 8 7 270 0 1 25 0 2 586 0 1 20 5 1 162 0 1 198 0 1 80 3 7 63 5 4 239 4 0 6 8 12 125 0 4 585 3 4 94 0 4 584 15 8 57 0 1 842 0 1 4 10 12 488 12 0 203 12 8 4 0 1 196 chain 12106 chr12 133851895 + 67962149 67962322 MER2 342 - 0 165 151769 40 2 0 5 8 2 118 chain 3062 chr12 133851895 + 67968715 67968749 LTR82A 830 - 788 822 223785 34 chain 31307 chr12 133851895 + 67968814 67969486 MLT2A1 477 + 0 477 81979 33 0 5 127 7 5 11 0 1 21 1 2 80 0 3 85 249 46 58 chain 11796 chr12 133851895 + 68004513 68004703 MER30 238 + 37 238 153061 56 15 5 14 2 26 60 3 0 40 chain 123296 chr12 133851895 + 68066582 68068099 THE1B-int 1605 - 2 1560 29946 44 0 1 334 0 1 95 2 1 138 0 1 59 2 0 172 4 13 287 0 25 257 0 7 123 chain 21891 chr12 133851895 + 68068144 68068459 THE1B 368 - 0 368 120660 46 7 16 112 4 33 105 5 20 36 chain 32191 chr12 133851895 + 68081033 68081484 L1MA2 4263 + 3662 4101 80538 144 3 0 152 1 0 8 1 0 92 19 12 31 chain 5554 chr12 133851895 + 68102234 68102383 MER45A 178 + 0 154 189533 33 32 34 17 1 0 6 8 11 27 5 6 20 chain 9983 chr12 133851895 + 68107000 68107165 LTR9B 643 + 462 627 160659 13 2 0 18 1 0 4 0 1 10 1 5 72 20 18 24 chain 47650 chr12 133851895 + 68107229 68108026 HUERS-P3b-int 2065 + 1293 2052 60737 95 1 2 15 6 5 61 1 0 40 12 10 80 2 0 13 2 0 23 1 0 88 8 6 71 2 0 13 19 18 20 0 1 30 4 0 57 2 1 29 1 3 25 0 4 28 35 8 13 chain 24897 chr12 133851895 + 68108122 68108515 LTR9B 643 + 166 561 105367 21 0 1 15 3 5 13 11 12 180 49 47 101 chain 123742 chr12 133851895 + 68112133 68113576 LTR12C 1709 - 0 1709 29797 167 0 102 212 0 4 106 4 2 4 1 0 36 0 2 135 0 160 518 0 1 260 chain 4637 chr12 133851895 + 68138697 68138750 MSTA 426 - 239 292 199217 53 chain 40920 chr12 133851895 + 68160585 68161036 LTR7 482 - 0 482 68009 187 0 31 264 chain 300596 chr12 133851895 + 68162113 68165673 HERVH-int 3825 - 0 3825 13389 188 4 0 299 8 218 1189 0 1 214 8 35 239 0 1 662 1 0 49 2 1 9 21 0 21 2 1 41 2 53 24 1 0 10 1 0 38 5 0 309 0 11 151 3 1 38 0 1 21 chain 40656 chr12 133851895 + 68165675 68166126 LTR7 482 - 0 482 68356 197 1 32 253 chain 30914 chr12 133851895 + 68175878 68176250 MLT2A1 477 + 0 376 82663 168 1 5 203 chain 86507 chr12 133851895 + 68185333 68186543 L1P2 5180 - 3266 5178 40966 231 3 0 183 13 0 74 0 714 54 23 31 64 1 0 48 5 4 250 18 17 50 1 0 5 23 24 14 2 1 148 chain 5163 chr12 133851895 + 68206139 68206210 Tigger3b 1229 - 676 745 193422 35 2 0 34 chain 543229 chr12 133851895 + 68237588 68243601 L1PA3long 6157 - 0 6152 2307 928 1 0 4 0 1 704 0 3 2666 0 4 698 4 5 98 1 0 138 1 129 207 0 4 251 1 0 164 0 1 147 chain 2554 chr12 133851895 + 68256920 68257419 MER4E1 777 - 8 513 71753 68 1 0 8 5 3 83 0 4 52 23 10 31 1 0 4 1 2 108 3 17 48 0 4 63 chain 513773 chr12 133851895 + 68257697 68264119 L1PA7 6471 - 6 6469 5805 156 30 29 259 3 0 92 6 0 304 0 7 904 5 38 151 0 2 81 0 1 511 0 17 179 0 2 234 0 1 397 0 4 135 14 10 248 2 0 6 0 2 211 1 0 826 1 0 257 16 16 89 26 24 457 1 0 355 0 1 56 15 6 109 0 2 41 59 58 19 0 1 4 1 0 161 chain 1331 chr12 133851895 + 68264138 68264398 MER4E1 777 - 513 777 71753 9 20 20 50 1 0 11 6 10 143 1 2 19 chain 54967 chr12 133851895 + 68265602 68266339 MER4E1 777 - 0 777 55726 7 0 2 14 0 2 9 1 4 61 0 8 120 2 8 76 3 4 25 0 1 61 1 0 24 1 20 306 1 0 25 chain 38095 chr12 133851895 + 68293541 68293961 L1PA2 6032 + 5605 6032 71992 269 0 7 151 chain 551603 chr12 133851895 + 68293988 68300004 L1PA2 6032 + 0 6027 1238 326 1 0 538 0 6 747 0 2 1512 0 4 2892 chain 197807 chr12 133851895 + 68347074 68349243 L1PA3long 6157 + 3990 6157 19370 237 1 0 1925 1 0 5 chain 443804 chr12 133851895 + 68364820 68370469 L1PA8 5853 - 0 5738 8932 93 1 0 19 2 1 49 1 0 83 9 7 37 1 0 48 0 1 14 0 18 21 0 2 141 0 1 524 1 0 99 2 1 207 1 7 25 1 2 935 0 1 149 0 2 145 0 1 305 1 2 42 0 1 397 9 5 42 1 2 149 0 4 253 5 2 5 0 1 472 0 1 9 0 1 212 45 0 484 0 1 157 0 2 14 12 3 282 0 1 63 2 113 80 chain 6615 chr12 133851895 + 68379408 68379591 MLT1C 463 - 219 405 180339 45 2 0 10 20 27 27 49 47 30 chain 18119 chr12 133851895 + 68381028 68381301 THE1D 372 + 88 369 132546 23 0 1 54 6 10 14 6 4 122 0 1 15 6 10 27 chain 47977 chr12 133851895 + 68407594 68408384 L1PB1 5432 - 12 766 60502 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 24 12 16 1 0 43 8 7 9 2 1 50 3 1 12 4 0 10 1 0 13 1 0 20 12 11 51 1 0 36 0 2 17 2 3 179 23 18 50 1 0 81 chain 26375 chr12 133851895 + 68423225 68423574 THE1A 353 - 0 353 98514 243 5 4 21 7 12 73 chain 25579 chr12 133851895 + 68433200 68433487 AluYk4 311 + 2 289 101829 287 chain 18240 chr12 133851895 + 68437728 68438318 MER1A 529 + 249 529 132231 73 319 0 32 1 4 35 7 11 51 9 11 63 chain 223884 chr12 133851895 + 68439135 68441837 L1PA6 6164 - 15 2740 17661 154 1 2 284 0 2 339 0 1 144 0 4 23 24 7 213 0 24 378 5 16 763 4 3 205 3 0 63 0 1 99 chain 43409 chr12 133851895 + 68448056 68448531 L1PA3long 6157 - 0 475 64924 475 chain 23506 chr12 133851895 + 68448531 68448785 L1PA3long 6157 + 5410 5664 113098 254 chain 298945 chr12 133851895 + 68453727 68457733 L1PA10 4194 - 44 4015 13481 28 8 5 309 11 19 133 0 4 657 20 26 13 1 0 222 0 1 102 3 4 357 0 1 120 0 10 274 0 5 100 7 6 106 0 2 357 1 0 599 0 1 5 1 0 147 1 0 47 7 5 81 2 1 8 7 0 15 1 0 9 14 8 7 1 0 21 2 0 12 57 30 7 1 0 14 2 0 22 1 0 8 33 26 9 2 0 8 3 0 7 1 0 6 2 0 7 chain 15353 chr12 133851895 + 68472215 68472404 MER107 203 + 8 203 140335 162 2 8 25 chain 115373 chr12 133851895 + 68476951 68478550 THE1B-int 1605 - 8 1605 32651 39 1 0 42 8 10 12 0 1 51 2 1 142 7 4 122 1 0 282 4 5 63 8 8 53 0 9 302 72 62 83 1 2 304 chain 4409 chr12 133851895 + 68500871 68500963 MIR 256 + 109 183 201814 49 28 10 15 chain 16246 chr12 133851895 + 68509439 68509636 Tigger1 2417 - 2 198 137632 164 1 0 32 chain 25276 chr12 133851895 + 68564033 68564334 AluSp 311 + 10 311 103338 301 chain 19756 chr12 133851895 + 68636673 68637003 THE1B 368 - 0 368 127941 107 53 63 30 1 0 29 1 0 18 0 15 47 0 15 44 chain 126739 chr12 133851895 + 68681666 68683115 L1PA5 6144 + 4687 6140 28871 270 1 8 7 7 0 322 1 5 841 chain 4406 chr12 133851895 + 68696070 68696144 MER20 218 + 31 106 201861 46 11 12 17 chain 51795 chr12 133851895 + 68724030 68724682 PABL_A 660 - 0 660 57759 39 4 5 348 0 4 77 0 4 93 6 5 85 chain 21006 chr12 133851895 + 68731385 68731647 AluSx4 309 + 19 280 123888 141 5 4 116 chain 38617 chr12 133851895 + 68745979 68746518 MER41B 635 + 0 549 71272 123 3 4 163 1 2 71 6 0 36 1 0 5 6 8 43 0 13 81 chain 2875 chr12 133851895 + 68746661 68746695 MLT1A0 366 + 275 309 227446 34 chain 24842 chr12 133851895 + 68762676 68762959 AluSp 311 - 24 307 105668 283 chain 3121 chr12 133851895 + 68774115 68774154 MLT1L 557 - 3 41 222525 28 1 0 10 chain 37383 chr12 133851895 + 68792298 68792709 L1PA4 6152 - 0 411 72984 411 chain 5173 chr12 133851895 + 68800541 68800677 MER63A 208 + 29 167 193324 18 34 44 43 9 3 24 2 0 6 chain 20496 chr12 133851895 + 68817917 68818163 AluY 311 + 38 289 125639 94 0 1 126 4 7 15 0 1 7 chain 26486 chr12 133851895 + 68835771 68836118 THE1A 353 - 4 352 98093 220 0 1 18 1 0 72 13 14 23 chain 126587 chr12 133851895 + 68836119 68837695 THE1A-int 1579 - 0 1579 28924 256 21 7 638 4 18 79 0 1 564 1 3 13 chain 27910 chr12 133851895 + 68837695 68838048 THE1A 353 - 0 353 93319 243 9 8 64 0 1 37 chain 15397 chr12 133851895 + 68842546 68842746 MER107 203 - 0 203 140206 28 1 4 171 chain 4732 chr12 133851895 + 68844245 68844298 MLT2A2 560 + 507 560 198149 53 chain 40111 chr12 133851895 + 68851048 68851596 L1MA2 4263 + 3161 3708 69164 36 0 1 29 2 1 10 1 3 309 0 1 14 26 22 121 chain 15069 chr12 133851895 + 68869336 68869553 MER30 238 + 0 233 141116 18 8 13 76 6 17 109 chain 2834 chr12 133851895 + 68871154 68871185 L2a 937 + 358 389 228155 31 chain 44460 chr12 133851895 + 68878223 68878711 SVA_D 2077 + 1589 2077 63626 488 chain 18163 chr12 133851895 + 68900211 68900580 THE1B 368 - 0 368 132428 24 4 6 19 8 9 66 22 20 10 4 9 12 42 34 41 11 12 106 chain 24007 chr12 133851895 + 68906416 68906783 THE1D 372 + 7 371 110291 68 19 0 93 16 25 45 1 7 40 0 1 85 chain 13638 chr12 133851895 + 68907498 68907684 L1PA4 6152 + 5958 6143 145822 11 7 0 4 0 7 58 2 1 104 chain 32193 chr12 133851895 + 68907873 68908277 L1PA6 6164 + 5751 6149 80533 240 0 1 25 8 1 131 chain 41935 chr12 133851895 + 68919072 68919573 MER9a2 513 + 0 513 66708 30 0 11 46 0 1 425 chain 21998 chr12 133851895 + 68931061 68931364 MER1B 344 - 5 309 120240 54 17 22 43 4 0 185 chain 40711 chr12 133851895 + 68934007 68934469 LTR2 463 + 0 463 68289 368 0 1 94 chain 419418 chr12 133851895 + 68936294 68941289 Harlequin-int 5206 + 125 5202 9548 10 2 1 158 17 0 5 0 1 69 0 86 25 2 3 40 4 5 154 1 0 74 0 1 87 0 1 191 2 1 66 2 0 5 0 2 212 0 1 307 1 2 697 4 7 417 1 0 593 0 9 327 1 0 1512 1 0 8 chain 37038 chr12 133851895 + 68941291 68941758 LTR2 463 + 0 463 73472 210 27 22 130 0 1 100 chain 89310 chr12 133851895 + 68946453 68948875 L1MA1 4479 + 2866 4190 39881 42 0 1 49 1 0 27 2 0 107 1060 0 58 8 6 19 4 1 75 1 0 12 4 0 126 4 0 129 2 0 176 0 1 20 11 10 14 21 18 63 3 0 5 2 0 5 3 10 6 2 0 13 1 0 87 1 0 6 3 0 103 0 3 16 9 8 25 2 0 35 1 0 9 1 0 11 4 1 9 7 0 18 chain 11614 chr12 133851895 + 68985043 68985204 MSTA 426 + 240 408 153831 56 0 5 10 3 6 79 1 0 12 chain 17329 chr12 133851895 + 68991576 68991878 L1MB3 1562 - 25 310 134714 10 4 3 66 53 38 68 1 0 100 chain 10304 chr12 133851895 + 68991978 68992123 MER2 342 + 132 290 159116 47 6 18 12 0 1 80 chain 3913 chr12 133851895 + 69068142 69068191 MIR 256 + 141 190 208645 49 chain 19304 chr12 133851895 + 69104900 69105136 AluSc8 310 + 50 290 129230 58 1 2 22 0 3 155 chain 8848 chr12 133851895 + 69113962 69114115 Tigger9b 617 - 112 267 166389 30 11 14 27 18 17 67 chain 2702 chr12 133851895 + 69123685 69123714 Tigger2b_Pri 1066 - 957 986 230222 29 chain 26250 chr12 133851895 + 69133339 69133632 AluY 311 + 4 298 99020 128 0 1 165 chain 39487 chr12 133851895 + 69150238 69151040 L1PB 1623 + 536 1016 70036 254 322 0 226 chain 6721 chr12 133851895 + 69186178 69186258 FLAM_C 140 + 38 118 179528 80 chain 8527 chr12 133851895 + 69189285 69189413 Tigger3b 1229 - 498 632 168158 23 3 2 11 4 11 87 chain 28643 chr12 133851895 + 69241228 69241532 AluYk11 308 - 4 308 90548 304 chain 22509 chr12 133851895 + 69245103 69245416 AluSc8 310 + 0 305 117993 46 18 12 68 0 3 169 5 0 7 chain 32748 chr12 133851895 + 69283506 69283906 MER48 407 + 3 407 79614 27 0 1 4 1 0 122 0 1 18 0 3 228 chain 18793 chr12 133851895 + 69286666 69286913 L1PA8 5853 + 5611 5853 130697 68 1 0 11 1 0 50 2 1 19 2 1 7 1 0 85 chain 38735 chr12 133851895 + 69303198 69303758 L1PA7 6471 + 5822 6452 71097 16 18 21 13 63 130 129 0 1 189 1 0 131 chain 105717 chr12 133851895 + 69320344 69321495 L1PA3long 6157 - 0 1150 35325 201 1 0 949 chain 61697 chr12 133851895 + 69321495 69322172 L1PA3long 6157 + 4341 5017 52003 177 1 0 499 chain 10559 chr12 133851895 + 69328289 69328404 L1PA5 6144 - 261 376 158003 115 chain 58836 chr12 133851895 + 69351489 69352147 L1PA6 6164 - 15 673 53496 658 chain 16429 chr12 133851895 + 69356109 69356335 MER39B 650 + 12 237 137121 73 3 0 65 4 5 58 0 1 23 chain 7168 chr12 133851895 + 69359882 69359968 MER34A 573 - 487 573 176279 86 chain 178814 chr12 133851895 + 69382118 69384484 MER57-int 2662 + 40 2368 21092 30 45 27 11 2 1 179 0 2 23 2 0 506 2 0 212 0 2 57 5 1 313 24 20 12 0 1 4 1 0 93 1 0 4 0 1 17 9 11 275 18 1 65 3 0 111 0 1 234 5 14 64 2 0 10 1 0 26 chain 1712 chr12 133851895 + 69384505 69384810 THE1B-int 1605 + 990 1293 71784 30 2 0 273 chain 553974 chr12 133851895 + 69384829 69390971 L1PA3long 6157 + 5 6157 955 208 0 17 484 8 1 325 6 5 206 0 1 955 0 2 183 0 4 721 0 1 823 7 0 2216 chain 1752 chr12 133851895 + 69391004 69391316 THE1B-int 1605 + 1293 1605 71784 32 0 1 18 1 0 261 chain 25546 chr12 133851895 + 69391318 69391671 THE1B 368 + 2 367 102015 42 0 15 57 4 5 40 12 11 118 3 0 77 chain 32705 chr12 133851895 + 69399826 69400333 MER4B 649 + 0 544 79678 59 0 1 29 1 0 68 0 42 44 1 6 83 8 0 12 0 15 23 0 3 35 5 0 5 10 0 49 18 13 57 chain 4249 chr12 133851895 + 69406699 69406751 LTR54B 464 - 412 464 203889 52 chain 3166 chr12 133851895 + 69407397 69407438 MER31B 477 + 435 477 221638 33 0 1 8 chain 162788 chr12 133851895 + 69443575 69445804 L1PB1 5432 + 3213 5423 22966 52 5 6 162 2 1 132 0 2 126 0 7 20 0 4 901 3 0 158 2 1 19 0 9 27 11 10 185 11 12 5 1 0 35 0 1 15 15 11 26 1 0 6 1 0 12 5 1 8 2 0 53 2 1 15 1 0 41 7 6 13 69 50 24 1 0 21 1 0 13 1 0 19 chain 37021 chr12 133851895 + 69467216 69467777 L1PB2 3958 + 3295 3838 73492 12 2 0 56 1 0 11 6 0 12 1 2 15 1 0 29 23 21 92 2 0 73 1 0 63 1 0 71 3 1 22 1 0 63 chain 24115 chr12 133851895 + 69472790 69473083 AluSp 311 + 8 300 109665 124 1 0 168 chain 4610 chr12 133851895 + 69473526 69473618 MER63C 923 + 124 197 199513 12 21 0 11 0 2 48 chain 151024 chr12 133851895 + 69474874 69476569 L1PA3long 6157 + 4453 6147 24475 835 1 0 706 18 18 135 chain 8258 chr12 133851895 + 69502737 69502988 MLT1D 503 - 64 315 169633 27 10 12 71 107 110 17 5 0 14 chain 37135 chr12 133851895 + 69508085 69508654 MLT2A2 560 + 0 560 73328 27 21 0 142 12 11 12 32 35 97 6 3 75 0 11 57 1 3 87 chain 5587 chr12 133851895 + 69510371 69510433 LTR9B 643 - 561 623 189207 62 chain 23373 chr12 133851895 + 69522340 69522625 AluSc 308 + 11 296 113793 285 chain 62724 chr12 133851895 + 69533297 69534044 MER4E 760 + 0 753 51576 23 0 1 497 0 1 157 0 2 53 0 2 17 chain 18212 chr12 133851895 + 69541891 69542255 THE1D 372 + 0 360 132307 15 1 3 17 78 69 84 9 7 43 0 6 63 1 0 4 1 2 21 7 6 20 chain 23257 chr12 133851895 + 69553788 69554094 AluSp 311 + 10 297 114404 117 19 0 170 chain 5698 chr12 133851895 + 69557637 69557716 MADE1 96 + 0 96 188131 28 1 18 50 chain 26918 chr12 133851895 + 69562162 69562619 MER51B 395 + 0 380 96562 39 13 0 48 68 6 96 1 0 39 9 8 144 chain 17739 chr12 133851895 + 69564104 69564486 LTR36 617 - 175 615 133595 21 96 164 168 7 6 26 1 0 4 17 9 42 chain 33386 chr12 133851895 + 69579758 69580199 MER4A1 472 + 0 472 78594 232 0 22 13 7 14 88 0 2 101 chain 7565 chr12 133851895 + 69580474 69580587 LTR7 482 - 0 114 173765 49 13 14 51 chain 136126 chr12 133851895 + 69583749 69585546 MER4-int 2692 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6157 + 4115 6152 20422 419 0 1 1523 1 3 91 chain 198892 chr12 133851895 + 69708930 69715152 L1PA15 4387 - 31 3018 19289 27 23 16 43 16 21 32 1 0 13 4 0 19 1 0 17 2326 31 7 1 0 21 10 9 96 2 3 66 10 9 6 0 3 24 4 2 26 282 8 32 0 1 4 16 18 429 0 2 5 3 5 96 672 30 75 5 4 119 2 1 227 0 4 51 0 1 12 0 4 91 0 1 148 0 7 71 0 6 258 7 8 51 0 3 29 0 1 115 14 0 3 31 0 18 3 0 105 0 1 79 58 57 316 chain 19470 chr12 133851895 + 69709187 69709488 THE1B 368 - 62 368 128755 63 21 19 10 0 4 10 7 10 21 1 0 55 6 7 107 chain 110729 chr12 133851895 + 69709496 69711060 THE1B-int 1605 - 8 1605 34019 99 0 1 372 0 2 6 4 2 357 7 1 49 21 23 22 37 36 96 15 14 36 1 2 20 0 64 24 0 1 260 0 3 5 33 0 85 0 2 15 chain 7791 chr12 133851895 + 69717632 69717850 MLT1B 390 + 149 376 172355 21 32 40 18 64 65 83 chain 41357 chr12 133851895 + 69723563 69724145 HERVK22-int 3844 - 1825 2487 67463 49 0 4 145 1 0 217 26 32 16 0 67 27 4 8 97 chain 44822 chr12 133851895 + 69725952 69726984 LTR22 571 - 4 571 63265 189 35 0 86 432 0 38 1 2 126 1 2 124 chain 26872 chr12 133851895 + 69726267 69726687 LTR7B 505 + 0 498 96732 29 0 33 46 0 10 57 0 38 12 31 25 28 1 3 84 1 0 23 0 1 22 0 2 28 17 16 41 chain 56972 chr12 133851895 + 69766620 69768175 L1MA3 4352 - 317 1885 31472 36 14 13 80 1 0 118 5 0 89 1 4 291 17 29 103 0 4 285 22 20 153 0 5 63 3 1 4 0 1 9 8 2 104 0 1 30 0 1 10 3 1 84 0 5 22 chain 131972 chr12 133851895 + 69768195 69769669 SVA_B 1603 - 7 1552 27639 145 1 0 40 0 20 66 0 10 346 0 42 876 chain 6082 chr12 133851895 + 69769698 69769864 L1MA3 4352 - 1885 2051 31472 60 2 0 45 5 4 6 1 0 36 0 4 11 chain 89157 chr12 133851895 + 69774487 69775554 MER11B 1079 - 16 1079 39945 290 10 12 166 1 0 212 2 0 124 3 0 259 chain 7529 chr12 133851895 + 69848875 69848990 L1MA4 2864 - 804 918 173979 48 16 15 51 chain 30163 chr12 133851895 + 69862952 69863267 AluYb8 318 - 3 318 84302 315 chain 11784 chr12 133851895 + 69892205 69892451 MER30 238 + 0 238 153117 15 7 16 68 57 30 23 0 6 22 4 5 5 0 3 45 chain 60121 chr12 133851895 + 69914328 69915383 L1PREC2 3366 - 307 1334 52760 11 2 0 38 6 4 34 139 108 10 3 0 4 1 0 7 0 1 4 1 0 32 1 0 42 56 47 36 2 23 171 9 8 109 0 2 188 3 2 146 chain 26369 chr12 133851895 + 69945803 69946107 AluSp 311 + 0 307 98534 91 0 3 213 chain 3872 chr12 133851895 + 69982577 69982625 MER1B 344 + 285 332 209276 18 1 0 29 chain 14348 chr12 133851895 + 69985511 69985694 MER107 203 + 5 203 143386 123 1 0 5 0 1 15 1 0 8 0 16 30 chain 20262 chr12 133851895 + 69985985 69986285 AluSp 311 + 11 299 126336 37 26 27 45 8 0 166 5 0 13 chain 14017 chr12 133851895 + 70024962 70025130 MER4A1 472 - 295 472 144522 26 0 9 142 chain 13657 chr12 133851895 + 70068672 70068834 AluSp 311 - 7 169 145751 162 chain 33206 chr12 133851895 + 70077169 70077617 MER4A1 472 + 0 472 78872 15 0 2 81 0 1 127 20 39 80 0 2 125 chain 29904 chr12 133851895 + 70116657 70117038 MLT2A1 477 - 92 476 85081 181 0 1 21 1 2 11 4 1 147 0 4 16 chain 20346 chr12 133851895 + 70137777 70138017 L1PA7 6471 - 12 251 126076 7 1 0 232 chain 7084 chr12 133851895 + 70139445 70139539 L1PA7 6471 - 3 99 176863 10 1 4 19 1 0 63 chain 122008 chr12 133851895 + 70152771 70154210 SVA_C 1631 - 7 1631 30384 620 0 1 48 44 0 30 0 1 14 1 0 46 0 6 2 11 0 6 0 80 95 0 153 501 8 8 13 chain 3717 chr12 133851895 + 70153439 70153483 SVA_C 1631 - 675 722 183154 7 0 4 35 1 0 1 chain 9882 chr12 133851895 + 70164116 70164231 MER2 342 - 93 208 161164 115 chain 566288 chr12 133851895 + 70167190 70173221 L1HS 6032 - 0 6032 133 1635 0 1 4396 chain 113540 chr12 133851895 + 70191305 70192563 L1PA3long 6157 - 0 1258 33213 1258 chain 278542 chr12 133851895 + 70197278 70200357 L1PA4 6152 - 0 3082 14717 254 1 0 590 0 4 1782 0 1 344 1 0 107 chain 79123 chr12 133851895 + 70200359 70201295 SVA_A 1864 - 0 1118 43987 43 5 6 569 3 1 27 0 73 148 0 110 141 chain 4967 chr12 133851895 + 70201524 70201711 SVA_F 1814 - 564 1177 195516 42 24 521 23 74 3 24 chain 225731 chr12 133851895 + 70201738 70204294 L1P1 4361 - 1285 4360 17543 514 16 4 174 0 4 1142 0 1 60 0 1 561 4 529 85 chain 38510 chr12 133851895 + 70229507 70230215 LTR1 825 - 13 806 71423 23 15 14 41 1 2 125 0 3 49 1 0 131 92 192 28 44 0 6 1 0 12 0 1 26 1 0 32 7 23 21 5 17 47 chain 79313 chr12 133851895 + 70239972 70240859 L1PA3long 6157 - 1 880 43904 243 8 1 94 1 0 541 chain 134386 chr12 133851895 + 70246366 70248114 SVA_B 1603 - 0 1554 27134 420 0 1 39 1 0 154 0 41 23 4 0 412 232 0 293 0 1 170 chain 1898 chr12 133851895 + 70247419 70247491 SVA_B 1603 - 820 890 149114 30 2 0 40 chain 247079 chr12 133851895 + 70254522 70257229 L1PA3long 6157 - 0 2700 16390 140 7 0 2560 chain 542457 chr12 133851895 + 70332480 70338469 L1PA3long 6157 + 19 6152 2439 133 0 1 55 0 1 155 0 1 411 0 128 117 2 1 378 9 0 639 0 19 2302 0 4 1788 chain 12222 chr12 133851895 + 70338516 70338666 L1PA7 6471 + 6318 6465 151331 141 3 0 6 chain 18185 chr12 133851895 + 70343315 70343547 MER30 238 + 0 238 132370 31 4 0 79 4 14 114 chain 9794 chr12 133851895 + 70344988 70345112 MLT1B 390 - 24 148 161629 124 chain 2902 chr12 133851895 + 70353703 70353734 MIRb 242 + 164 195 227002 31 chain 22992 chr12 133851895 + 70353954 70354232 AluSq2 311 + 21 309 115662 112 0 1 79 0 9 87 chain 28955 chr12 133851895 + 70358515 70358825 AluYg6 310 + 0 310 89201 310 chain 35808 chr12 133851895 + 70380313 70380705 L1PA2 6032 + 5630 6023 75120 388 0 1 4 chain 15730 chr12 133851895 + 70380756 70380946 L1PA7 6471 - 12 204 139175 145 0 2 45 chain 556264 chr12 133851895 + 70406845 70412860 L1PA2 6032 + 14 6029 693 510 4 0 9 0 4 5492 chain 28364 chr12 133851895 + 70445186 70445497 L1PA5 6144 - 5 316 91716 311 chain 46716 chr12 133851895 + 70445500 70446059 L1P1 4361 + 1341 1884 61443 172 26 10 361 chain 24503 chr12 133851895 + 70452401 70452722 L1PA15 4387 + 1555 1877 107531 143 5 2 6 0 1 28 0 3 139 chain 5898 chr12 133851895 + 70467452 70467527 MER51B 395 + 307 384 186204 5 0 2 70 chain 40233 chr12 133851895 + 70479069 70479509 LTR7Y 441 + 0 441 68977 334 0 1 106 chain 292111 chr12 133851895 + 70479509 70483159 HERVH-int 3825 + 0 3762 13889 489 2 0 11 165 31 39 1 0 10 1 0 19 11 23 9 3 0 25 1 0 38 4 3 81 0 3 660 0 1 174 1 0 69 4 31 1156 0 1 197 9 11 39 8 218 424 chain 4776 chr12 133851895 + 70480073 70480126 HERVH-int 3825 + 436 489 197633 53 chain 39468 chr12 133851895 + 70483604 70484075 LTR7Y 441 + 0 441 70058 165 31 0 169 0 1 106 chain 60290 chr12 133851895 + 70485914 70487182 L1PA15 4387 + 3398 4356 52687 177 0 5 182 4 13 37 347 25 50 17 15 5 2 0 16 10 9 172 1 0 26 1 0 41 0 14 23 4 0 9 1 0 50 10 7 34 5 7 10 7 4 27 chain 2661 chr12 133851895 + 70488912 70488941 MER45A 178 - 143 172 230897 29 chain 21651 chr12 133851895 + 70498323 70498601 MER4A1 472 - 2 472 121570 66 6 197 137 0 1 69 chain 11490 chr12 133851895 + 70501405 70501555 THE1D 372 - 0 148 154334 32 1 0 67 0 1 8 2 0 40 chain 24989 chr12 133851895 + 70518010 70518420 L1MA2 4263 + 3710 4111 104862 63 0 3 20 16 14 148 19 17 83 15 8 39 1 0 6 chain 28388 chr12 133851895 + 70525069 70525467 LTR7B 505 - 64 505 91627 54 0 1 24 1 0 81 30 1 28 6 68 69 0 10 105 chain 26602 chr12 133851895 + 70527799 70528137 L1PA5 6144 - 3 333 97649 168 0 1 125 9 0 36 chain 8038 chr12 133851895 + 70547434 70547527 LTR8 732 - 0 93 170824 93 chain 180888 chr12 133851895 + 70549435 70552195 MER4-int 2692 + 51 2692 20909 35 0 1 38 4 1 55 5 6 58 0 1 185 14 0 119 0 10 26 10 9 127 6 5 74 0 1 62 1 0 55 0 1 386 0 5 15 2 0 41 0 9 35 1 0 8 1 0 9 138 0 46 4 7 17 27 22 115 25 32 51 0 1 145 8 9 31 1 0 18 34 35 157 0 2 158 0 1 6 29 24 143 4 15 15 3 0 207 0 1 6 chain 123815 chr12 133851895 + 70576143 70577580 L1PA6 6164 - 3 1449 29762 48 0 4 277 0 1 509 0 4 603 chain 11693 chr12 133851895 + 70586317 70586443 SVA_A 1864 - 0 126 153513 126 chain 172217 chr12 133851895 + 70594938 70597554 SVA_E 1901 + 0 1892 21790 153 1 0 664 717 0 110 4 0 39 7 13 36 2 0 738 6 0 139 chain 33034 chr12 133851895 + 70595831 70596272 SVA_F 1814 + 688 1274 79165 45 0 169 35 4 28 211 0 1 29 49 0 68 chain 2279 chr12 133851895 + 70596155 70596204 SVA_F 1814 + 981 1030 129781 49 chain 10993 chr12 133851895 + 70596325 70596473 SVA_E 1901 + 817 989 101977 63 17 43 4 1 0 31 2 1 30 chain 10083 chr12 133851895 + 70615845 70616111 L1PB1 5432 - 88 317 160165 12 1 0 5 3 1 17 9 0 13 3 0 16 1 0 43 17 0 16 15 19 31 5 3 9 6 2 13 3 2 4 1 0 23 chain 5205 chr12 133851895 + 70625362 70625477 MSTB 430 + 268 382 192975 21 31 30 43 0 2 8 2 0 10 chain 167180 chr12 133851895 + 70628172 70630088 L1PA4 6152 - 11 1926 22373 833 0 4 49 16 0 28 4 3 70 0 5 484 1 0 314 0 8 117 chain 4288 chr12 133851895 + 70647597 70647684 MER44B 551 - 40 129 203371 29 27 29 31 chain 23122 chr12 133851895 + 70681916 70682221 AluSq2 311 - 3 303 115033 174 2 0 91 8 5 30 chain 538952 chr12 133851895 + 70693005 70699096 L1PA4 6152 - 1 6149 3001 779 1 0 70 0 5 92 2 3 1313 4 3 196 0 2 171 0 1 257 0 5 71 1 0 1674 0 6 82 4 9 83 0 3 133 0 1 416 0 2 33 0 26 384 0 3 325 chain 3302 chr12 133851895 + 70711079 70711116 L1PA8 5853 - 31 68 218932 37 chain 27948 chr12 133851895 + 70775943 70776237 AluYd8 298 + 0 294 93175 294 chain 12539 chr12 133851895 + 70776665 70776839 Tigger3a 397 - 70 258 150084 100 6 10 50 1 11 17 chain 60403 chr12 133851895 + 70786021 70786763 L1PA7 6471 + 5726 6466 52633 221 6 6 11 9 0 26 0 3 128 1 0 322 0 5 18 chain 21397 chr12 133851895 + 70834266 70834548 AluSp 311 + 2 286 122518 50 25 27 207 chain 23100 chr12 133851895 + 70836031 70836348 AluSp 311 + 0 311 115142 71 10 9 52 3 0 17 2 1 133 1 0 28 chain 29234 chr12 133851895 + 70838295 70838668 MSTA-int 1630 + 2 377 87890 10 1 2 272 1 2 89 chain 183252 chr12 133851895 + 70848244 70850521 L1PA8 5853 - 0 2270 20655 93 1 0 17 1 0 55 1 0 9 2 1 70 2 0 44 1 0 28 0 1 248 0 1 272 6 4 676 7 6 283 1 0 80 1 2 342 0 1 37 chain 29274 chr12 133851895 + 70854705 70855114 MSTA-int 1630 + 1251 1622 87677 267 1 0 39 37 0 65 chain 31930 chr12 133851895 + 70859859 70860345 LTR19A 502 + 0 502 80968 173 38 0 22 10 46 41 8 14 11 5 6 15 0 10 120 0 1 43 chain 196509 chr12 133851895 + 70863176 70865799 MER61-int 3695 + 23 2681 19465 6 0 2 13 1 2 24 1 5 14 3 11 133 7 7 30 5 4 136 1 2 45 17 0 9 4 17 54 7 6 99 2 0 113 2 0 20 0 3 46 0 9 15 0 5 279 8 13 297 0 1 176 0 5 791 0 1 199 1 0 52 0 1 13 chain 208706 chr12 133851895 + 70865799 70868143 L1PA5 6144 - 1521 3871 18589 95 0 1 79 0 3 97 0 4 459 0 2 180 4 0 448 0 2 77 2 0 903 chain 131126 chr12 133851895 + 70868143 70869631 L1PA5 6144 + 4629 6120 27813 241 0 4 977 1 0 269 chain 8698 chr12 133851895 + 70870990 70871126 THE1D 372 + 251 372 167208 24 21 6 91 chain 24145 chr12 133851895 + 70880926 70881253 L1P4 1494 + 1064 1389 109497 103 1 0 183 6 5 34 chain 508533 chr12 133851895 + 70884599 70891435 L1PA7 6471 - 1 6471 6275 12 3 8 143 1 0 144 1 0 546 0 3 133 326 1 418 0 3 39 0 1 4 63 29 37 19 17 86 0 1 93 0 1 229 4 6 218 7 4 86 2 0 154 0 1 87 1 0 256 2 1 156 0 4 22 1 3 27 1 0 220 42 0 252 7 4 5 0 3 115 5 9 244 18 4 373 0 8 186 0 1 230 1 0 577 1 2 268 6 6 19 1 0 237 15 30 72 0 1 121 12 13 93 0 1 154 0 8 241 chain 208286 chr12 133851895 + 70895010 70897981 L1PA8A 6298 - 7 2685 18618 37 1 3 267 0 1 268 2 3 43 305 0 96 7 1 82 2 1 222 0 1 231 2 0 133 0 3 9 0 1 36 0 1 385 6 10 659 0 3 76 10 14 92 chain 10126 chr12 133851895 + 70905162 70905329 MER5A 189 - 20 181 159962 18 1 0 11 3 0 54 13 11 67 chain 6820 chr12 133851895 + 70921737 70921861 MADE1 96 - 1 96 178791 46 32 3 46 chain 4975 chr12 133851895 + 70979167 70979403 THE1D 372 + 0 246 115333 62 3 13 91 33 33 47 chain 58056 chr12 133851895 + 70979444 70980126 L1PA5 6144 - 16 697 53950 348 1 0 333 chain 2677 chr12 133851895 + 70980134 70980261 THE1D 372 + 246 372 115333 93 2 1 32 chain 31014 chr12 133851895 + 70988857 70989227 L1PA7 6471 + 6089 6458 82489 208 0 1 4 1 0 19 8 7 130 chain 8186 chr12 133851895 + 71014446 71014595 L1PB4 2604 + 2391 2552 170041 73 39 0 8 0 51 29 chain 286956 chr12 133851895 + 71022983 71026365 L1PA6 6164 + 2757 6162 14224 211 4 5 217 0 1 47 7 6 72 0 1 112 6 7 201 0 27 602 18 5 91 0 4 1171 3 5 276 1 0 105 6 7 232 chain 2850 chr12 133851895 + 71037991 71038024 MER57F 435 + 388 421 227858 33 chain 5028 chr12 133851895 + 71086113 71086222 MER3 215 + 44 161 194845 16 22 31 21 4 3 46 chain 12021 chr12 133851895 + 71091861 71092012 L1PA7 6471 - 13 157 152115 77 6 0 45 1 0 22 chain 77903 chr12 133851895 + 71102767 71103999 L1PA13 3608 + 2383 3518 44566 159 0 1 74 1 2 30 0 6 112 1 0 56 0 4 97 0 1 30 22 1 16 6 7 63 7 0 118 1 0 113 2 0 42 92 28 13 0 1 35 1 0 4 2 0 47 2 0 5 2 0 20 1 0 20 26 18 12 chain 79166 chr12 133851895 + 71108860 71109911 MER11C 1089 - 30 1088 43969 261 8 0 60 0 1 38 1 0 5 0 4 95 65 63 203 8 12 62 0 9 245 chain 20051 chr12 133851895 + 71129075 71129377 THE1B 368 - 62 368 126974 63 2 1 12 7 6 10 0 4 10 1 0 4 17 21 6 1 0 169 chain 552877 chr12 133851895 + 71158801 71164943 L1PA3long 6157 + 0 6156 1082 742 1 0 2045 1 2 473 0 6 1295 0 1 333 0 1 687 0 5 153 0 1 412 chain 10190 chr12 133851895 + 71164974 71165149 L1PA16 3655 + 3381 3562 159674 35 38 44 102 chain 50407 chr12 133851895 + 71176060 71176627 L1PA5 6144 + 5575 6144 58707 343 0 1 59 0 1 165 chain 7847 chr12 133851895 + 71182965 71183050 L1PA4 6152 + 6066 6151 172028 85 chain 58958 chr12 133851895 + 71201366 71202361 MER11B 1079 + 32 1042 53423 284 1 18 24 0 5 94 28 27 12 26 14 13 0 1 12 1 2 38 0 1 6 0 4 8 5 0 67 42 49 7 1 0 20 46 40 16 5 7 16 10 11 49 1 2 163 chain 35201 chr12 133851895 + 71256147 71256530 L1PA3long 6157 + 5774 6157 75919 383 chain 8920 chr12 133851895 + 71258424 71258573 THE1B 368 + 1 151 166033 102 31 32 16 chain 291934 chr12 133851895 + 71259712 71262974 L1PA4 6152 + 2885 6151 13912 371 0 3 676 7 0 416 0 4 970 1 2 425 0 3 396 chain 153727 chr12 133851895 + 71271281 71273042 L1PA5 6144 + 4371 6144 24122 66 0 14 177 1 0 1151 1 0 365 chain 36880 chr12 133851895 + 71290472 71290875 L1PA4 6152 - 1081 1484 73683 403 chain 19745 chr12 133851895 + 71290875 71291094 L1PA4 6152 + 5082 5301 127969 219 chain 75830 chr12 133851895 + 71291095 71291943 L1PA4 6152 + 5301 6152 45582 561 0 3 287 chain 14242 chr12 133851895 + 71296315 71296638 L1PB1 5432 + 5114 5406 143751 22 1 0 11 1 0 10 6 2 9 2 0 31 1 0 21 2 1 16 1 0 44 1 0 14 68 51 19 1 0 5 1 0 21 2 1 8 0 1 5 chain 8475 chr12 133851895 + 71300696 71300796 HY3 101 + 0 100 168426 100 chain 12158 chr12 133851895 + 71323895 71324197 L1PB1 5432 - 45 318 151580 14 1 0 27 2 0 15 11 8 12 19 9 6 3 0 15 1 0 39 23 22 52 28 21 9 1 0 24 chain 30048 chr12 133851895 + 71339065 71339409 L1PA5 6144 - 205 549 84651 344 chain 47551 chr12 133851895 + 71341063 71341616 L1PA5 6144 - 22 569 60810 132 7 0 73 0 1 341 chain 18556 chr12 133851895 + 71421755 71422103 MER1B 344 + 0 343 131343 17 34 29 137 23 20 13 4 0 37 28 35 55 chain 15820 chr12 133851895 + 71429926 71430131 L1PA7 6471 + 6259 6464 138892 48 1 2 6 1 0 149 chain 4552 chr12 133851895 + 71480390 71480480 L1MA2 4263 - 149 225 200194 10 1 0 34 0 1 8 19 5 18 chain 485108 chr12 133851895 + 71492153 71497421 L1PA2 6032 + 767 6032 7554 357 1 0 2136 4 3 95 1 0 2674 chain 22774 chr12 133851895 + 71506981 71507367 THE1B 368 - 0 368 116709 49 12 20 90 5 4 32 2 1 78 57 33 61 chain 557368 chr12 133851895 + 71511852 71517883 L1PA2 6032 + 1 6032 571 316 1 0 807 1 0 955 0 2 1100 0 1 176 1 0 2674 chain 79173 chr12 133851895 + 71543334 71544422 MER11A 1151 + 0 1151 43965 55 0 99 135 8 5 94 0 1 47 7 8 229 6 9 154 1 0 24 44 1 54 0 1 55 0 1 135 0 4 40 chain 20226 chr12 133851895 + 71559427 71559731 LTR12C 1709 - 502 1053 126448 31 20 227 17 7 48 47 1 0 181 chain 5262 chr12 133851895 + 71559767 71559891 LTR12C 1709 - 653 777 138744 124 chain 8907 chr12 133851895 + 71561700 71561808 MER57A1 433 - 0 108 166104 108 chain 65507 chr12 133851895 + 71561836 71562696 L1PA7 6471 - 14 852 50336 132 26 36 274 43 6 137 0 2 166 1 4 81 chain 23575 chr12 133851895 + 71565483 71565783 AluSg7 307 - 5 307 112711 170 0 1 52 1 2 77 chain 32619 chr12 133851895 + 71572065 71572529 L1PB3 3668 + 282 749 79818 59 6 8 89 10 8 66 0 1 147 1 2 15 0 1 71 chain 2898 chr12 133851895 + 71574320 71574352 L1PB3 3668 + 404 436 227064 32 chain 3393 chr12 133851895 + 71574364 71574405 L1PB3 3668 + 446 487 217228 41 chain 29789 chr12 133851895 + 71605321 71605745 MER57A1 433 + 0 428 85516 241 20 21 38 21 24 104 chain 21624 chr12 133851895 + 71632981 71633265 THE1B 368 + 0 282 121683 14 2 0 33 0 1 126 1 0 108 chain 29374 chr12 133851895 + 71643192 71643505 AluYb8 318 + 0 313 87191 313 chain 7907 chr12 133851895 + 71652114 71652218 L1MB1 2102 + 1458 1572 171599 53 1 11 50 chain 228086 chr12 133851895 + 71657583 71660087 L1PA3long 6157 + 3648 6157 17412 298 0 1 267 0 2 403 0 2 1536 chain 9939 chr12 133851895 + 71684683 71684828 THE1B 368 - 218 367 160883 91 7 13 33 2 0 12 chain 8553 chr12 133851895 + 71686507 71686644 THE1B 368 - 227 368 168002 71 17 23 34 2 0 13 chain 49340 chr12 133851895 + 71699740 71700364 L1PA8A 6298 - 7 651 59493 85 1 2 26 0 2 71 0 18 31 0 1 312 3 1 95 chain 66658 chr12 133851895 + 71704450 71705188 L1PA5 6144 - 754 1492 49806 738 chain 64571 chr12 133851895 + 71705188 71705921 L1PA5 6144 + 5396 6130 50768 305 0 1 428 chain 60990 chr12 133851895 + 71761463 71762192 L1PA7 6471 - 1 729 52338 28 15 14 686 chain 28247 chr12 133851895 + 71762193 71762559 L1PA7 6471 + 5334 5711 92125 7 0 1 162 0 12 106 2 0 89 chain 36374 chr12 133851895 + 71770916 71771388 LTR12C 1709 + 979 1709 74394 18 6 231 335 0 33 113 chain 13031 chr12 133851895 + 71781143 71781283 AluYb8 318 - 4 144 148122 140 chain 29900 chr12 133851895 + 71783917 71784286 THE1B 368 - 0 368 85096 197 1 0 171 chain 221778 chr12 133851895 + 71805003 71808390 L1PB2 3958 + 108 3838 17766 32 2 0 20 8 0 12 8 0 8 1 0 47 1 0 4 2 0 228 1 0 10 11 2 91 7 6 53 1 2 152 0 1 399 2 1 80 7 1 72 0 9 238 94 3 16 2 0 29 20 497 50 1 0 71 19 20 210 7 5 28 6 10 142 56 0 59 5 6 147 0 2 53 2 1 30 0 1 210 16 15 7 0 1 29 0 23 39 0 4 25 2 0 51 3 6 8 8 0 36 19 31 10 1 0 85 12 11 33 0 8 27 7 6 57 6 5 68 0 4 12 7 0 7 0 6 58 chain 36086 chr12 133851895 + 71828734 71829220 L1PB3 3668 + 2866 3349 74778 72 0 1 48 2 0 18 2 0 80 2 1 128 0 1 4 1 0 47 0 2 23 1 0 58 chain 37838 chr12 133851895 + 71874876 71875375 L1PA8 5853 - 0 496 72354 43 0 4 43 1 0 22 2 1 52 1 0 9 2 1 70 2 0 44 1 0 207 chain 29088 chr12 133851895 + 71914301 71914652 L1PA6 6164 + 5809 6160 88599 351 chain 23019 chr12 133851895 + 71922966 71923322 THE1D 372 - 1 372 115535 131 65 80 160 chain 15748 chr12 133851895 + 71945810 71946030 L1PA8 5853 + 5637 5853 139115 36 7 6 11 2 1 49 2 1 19 1 0 93 chain 6320 chr12 133851895 + 71961745 71961827 MLT1E3 631 - 549 631 182642 82 chain 28844 chr12 133851895 + 71980184 71980485 AluYa5 310 - 9 310 89695 301 chain 33218 chr12 133851895 + 71984562 71984980 MER41A 554 - 122 540 78853 320 0 1 10 2 1 86 chain 34949 chr12 133851895 + 71987051 71987483 MER4A1 472 + 14 472 76264 107 0 4 105 0 22 220 chain 3812 chr12 133851895 + 72091686 72091731 Tigger4a 237 - 96 141 210212 45 chain 3417 chr12 133851895 + 72094500 72094538 L1PA6 6164 + 6124 6162 216804 38 chain 36181 chr12 133851895 + 72124661 72125123 LTR10F 562 - 0 562 74658 300 15 0 31 0 115 116 chain 5942 chr12 133851895 + 72136112 72136215 MLT1D 503 - 12 114 185765 15 16 15 72 chain 13021 chr12 133851895 + 72140004 72140195 MER2 342 + 20 218 148174 46 14 21 131 chain 67403 chr12 133851895 + 72158617 72159605 L1PB2 3958 - 125 1101 49484 58 1 0 96 17 11 51 1 0 63 3 0 5 3 8 29 0 1 58 8 4 10 2 0 58 5 4 15 1 0 40 20 18 14 0 2 358 7 6 32 0 2 33 chain 3402 chr12 133851895 + 72170453 72170489 LTR8 732 + 590 626 217028 36 chain 3663 chr12 133851895 + 72228953 72228995 5S 121 - 79 121 212517 42 chain 7498 chr12 133851895 + 72252151 72252247 L1MA5 2750 - 175 270 174170 13 1 0 82 chain 5668 chr12 133851895 + 72252942 72253009 LTR23 429 - 45 112 188407 67 chain 9996 chr12 133851895 + 72294157 72294286 MER85 139 + 0 139 160601 99 0 2 9 0 8 21 chain 65727 chr12 133851895 + 72303754 72304468 L1PA3long 6157 - 1112 1826 50132 714 chain 99215 chr12 133851895 + 72304468 72305553 L1PA3long 6157 + 5061 6147 36967 239 0 1 846 chain 10007 chr12 133851895 + 72313492 72313618 MER85 139 + 2 139 160550 88 1 12 37 chain 7371 chr12 133851895 + 72316186 72316269 L1PA6 6164 - 13 96 174969 83 chain 5216 chr12 133851895 + 72329757 72329845 L1MB7 1623 - 457 551 192857 47 15 21 26 chain 11316 chr12 133851895 + 72341221 72341386 MER53 195 + 0 166 155011 104 6 8 18 1 0 36 chain 16604 chr12 133851895 + 72344026 72344237 LTR7 482 - 9 221 136653 177 6 7 28 chain 25035 chr12 133851895 + 72362780 72363068 AluY 311 + 0 288 104618 12 1 0 120 0 1 155 chain 14241 chr12 133851895 + 72371744 72371965 Tigger3a 397 + 139 396 143756 110 0 33 40 28 31 43 chain 3411 chr12 133851895 + 72457509 72457555 MIR 256 + 102 145 216908 37 3 0 6 chain 120922 chr12 133851895 + 72463659 72465686 THE1B-int 1605 - 4 1605 30721 51 430 0 62 2 0 671 9 10 356 41 23 24 0 9 186 0 12 14 1 0 67 0 3 113 chain 80457 chr12 133851895 + 72472058 72473019 L1PA5 6144 - 1 954 43403 67 11 2 102 8 9 773 chain 36312 chr12 133851895 + 72485392 72485865 LTR3B_ 500 + 0 475 74489 303 0 1 92 8 10 15 4 3 51 chain 79188 chr12 133851895 + 72509635 72510664 L1PA8 5853 - 0 1048 43953 92 2 1 19 2 1 39 0 2 7 9 4 9 2 1 43 0 1 25 2 0 47 1 0 527 0 1 5 1 0 20 1 4 43 9 33 124 chain 13124 chr12 133851895 + 72514127 72514353 L1MA3 4352 - 4125 4330 147746 47 4 0 5 1 0 25 18 3 52 0 1 14 2 0 6 0 1 36 1 0 15 chain 542915 chr12 133851895 + 72544194 72550322 L1PA4 6152 - 15 6151 2353 829 0 4 1365 0 1 523 2 0 5 1 3 221 0 1 983 0 2 194 0 1 860 0 2 460 6 3 679 chain 136457 chr12 133851895 + 72578636 72580384 LTR12C 1709 + 0 1709 26753 104 5 4 158 5 0 487 0 2 77 1 59 172 0 7 41 1 0 5 3 1 79 0 3 25 0 4 168 102 0 241 2 0 72 chain 10717 chr12 133851895 + 72592540 72592692 THE1D 372 - 0 151 157341 32 1 0 27 1 2 4 1 0 86 chain 25356 chr12 133851895 + 72596959 72597272 AluY 311 + 0 307 102915 123 10 4 180 chain 37772 chr12 133851895 + 72608794 72609235 LTR7 482 - 8 482 72457 41 12 14 124 1 32 263 chain 117106 chr12 133851895 + 72621337 72622904 THE1B-int 1605 - 5 1585 32087 276 7 6 283 1 0 275 4 13 71 2 0 83 0 24 118 38 21 127 0 1 282 chain 19465 chr12 133851895 + 72622936 72623285 THE1B 368 - 15 368 128768 33 1 2 6 0 1 4 1 0 55 30 28 10 2 6 6 0 1 29 1 0 67 1 0 19 20 22 64 chain 95106 chr12 133851895 + 72632173 72633305 L1PA7 6471 - 5 1138 38063 7 5 0 147 7 6 263 0 2 410 0 5 293 chain 3852 chr12 133851895 + 72646894 72646953 MER6B 211 + 152 211 209617 15 0 2 29 3 1 12 chain 19422 chr12 133851895 + 72720072 72720345 L1PA8 5853 + 5586 5853 128892 19 5 3 73 1 0 6 10 9 44 2 1 19 1 0 93 chain 23483 chr12 133851895 + 72734918 72735199 L1PA6 6164 - 2 300 113203 158 0 17 123 chain 9667 chr12 133851895 + 72750887 72751022 L1PREC2 3366 + 2644 2776 162262 100 1 0 5 5 3 24 chain 145990 chr12 133851895 + 72755344 72756942 L1PA3long 6157 - 0 1597 25171 1290 1 0 307 chain 93363 chr12 133851895 + 72756942 72757974 L1PA3long 6157 + 3534 4568 38518 163 0 2 869 chain 187799 chr12 133851895 + 72765173 72767244 L1PA3long 6157 - 0 2074 20261 848 0 2 129 0 1 1094 chain 28312 chr12 133851895 + 72775175 72775475 AluYa5 310 - 11 310 91899 167 1 0 132 chain 4031 chr12 133851895 + 72788895 72788961 L1MA8 2339 - 144 211 206901 26 11 12 29 chain 5099 chr12 133851895 + 72807104 72807159 MER33 330 + 8 63 194093 55 chain 27224 chr12 133851895 + 72822758 72823117 L1PA7 6471 + 6094 6453 95513 213 20 20 126 chain 98349 chr12 133851895 + 72840087 72841215 L1P2 5180 + 1941 3062 37209 379 5 0 139 2 0 603 chain 71323 chr12 133851895 + 72873444 72874211 L1PA3long 6157 - 0 767 47780 767 chain 540950 chr12 133851895 + 72908420 72914436 L1PA3long 6157 - 1 6147 2671 842 5 1 6 0 2 112 1 0 444 2 0 884 0 1 2342 0 1 133 0 1 483 0 128 27 5 8 588 0 1 142 chain 13979 chr12 133851895 + 72977703 72977855 AluYf4 310 - 3 155 144654 152 chain 9784 chr12 133851895 + 72983135 72983257 L1PA8 5853 - 4 124 161684 89 1 0 19 2 1 11 chain 66037 chr12 133851895 + 72987313 72988114 L1PA5 6144 - 16 821 50079 135 34 0 8 0 34 482 0 2 135 0 2 7 chain 51612 chr12 133851895 + 72988478 72989052 L1PA3long 6157 + 5581 6156 57884 127 1 2 446 chain 543663 chr12 133851895 + 73028284 73034299 L1PA3long 6157 - 1 6147 2245 2517 0 1 2473 9 12 249 0 128 66 1 0 157 1 0 399 0 1 143 chain 7492 chr12 133851895 + 73034444 73034526 L1PA3long 6157 - 6071 6153 174198 82 chain 82412 chr12 133851895 + 73053619 73054586 LTR13A 966 - 0 966 42581 881 1 0 85 chain 39243 chr12 133851895 + 73097001 73097452 LTR7 482 + 0 482 70396 263 1 32 187 chain 295062 chr12 133851895 + 73097454 73101159 HERVH-int 3825 + 0 3815 13699 212 0 11 264 61 0 45 5 0 38 2 1 9 1 0 9 4 0 8 13 7 14 1 0 13 3 0 7 44 0 15 21 0 45 2 22 9 2 1 49 1 0 444 15 0 218 0 1 243 4 31 1404 8 218 254 3 8 215 chain 37835 chr12 133851895 + 73102301 73102749 LTR7 482 + 0 482 72358 213 0 1 49 1 32 65 0 1 4 1 2 115 chain 8173 chr12 133851895 + 73102783 73102900 LTR7 482 - 327 482 170108 40 8 46 69 chain 272903 chr12 133851895 + 73104160 73107728 HERVH-int 3825 - 0 3825 15022 382 34 35 19 0 2 163 1 0 51 0 1 472 3 0 37 0 1 494 2 0 21 0 4 133 0 4 31 0 1 258 4 31 215 1 0 39 9 0 205 15 0 72 0 2 98 0 9 212 6 9 29 13 16 14 0 2 12 158 387 32 1 0 332 chain 25314 chr12 133851895 + 73107737 73108091 LTR7 482 - 7 482 103150 47 0 1 121 0 1 20 1 0 24 4 35 43 0 51 17 8 46 69 chain 44899 chr12 133851895 + 73119269 73119944 L1PB 1623 - 37 678 63177 11 2 0 23 53 30 7 1 0 13 5 1 13 3 0 4 1 0 25 7 6 7 1 0 226 0 2 273 chain 30434 chr12 133851895 + 73119951 73120511 L1PB1 5432 + 4898 5427 83573 152 0 1 30 22 21 15 0 1 18 1 0 9 2 1 10 24 18 46 2 1 16 1 0 43 1 0 16 1 0 4 19 8 19 24 19 24 1 0 13 0 1 7 1 0 13 1 0 18 2 0 5 chain 54073 chr12 133851895 + 73149607 73150291 L1PA8A 6298 + 5589 6292 56307 101 0 5 14 5 7 364 0 2 5 2 0 5 5 17 183 chain 174956 chr12 133851895 + 73173669 73175796 L1P3 4156 + 0 2116 21466 56 9 1 111 5 1 22 1 0 60 2 1 67 2 1 522 1 0 393 0 4 132 0 1 744 chain 22006 chr12 133851895 + 73175796 73176097 L1PA7 6471 + 6157 6461 120204 69 7 11 42 10 8 32 4 5 137 chain 198747 chr12 133851895 + 73189193 73191710 L1PA8A 6298 - 8 2600 19300 27 0 1 40 8 13 13 14 77 214 0 4 240 6 5 166 2 1 74 10 11 56 1 6 29 1 0 33 3 0 92 1 0 303 1 2 471 0 1 412 0 1 126 1 2 118 1 0 54 chain 28058 chr12 133851895 + 73195761 73196062 AluYa5 310 - 9 310 92796 301 chain 517479 chr12 133851895 + 73201370 73207478 L1PA5 6144 - 9 6144 5425 448 0 4 385 1 5 641 2 1 310 0 4 408 0 1 425 0 1 433 1 6 1349 1 2 36 2 1 505 17 11 125 1 0 4 1 2 222 0 3 648 8 20 135 chain 20778 chr12 133851895 + 73208274 73208700 MER4E 760 - 8 425 124685 12 0 2 143 0 4 50 31 14 53 112 114 25 chain 26926 chr12 133851895 + 73208981 73209502 MER4D 903 + 113 642 96529 160 10 8 59 92 95 20 17 20 74 2 0 27 16 22 44 chain 43914 chr12 133851895 + 73209891 73210370 LTR7 482 - 0 482 64318 338 0 3 141 chain 24569 chr12 133851895 + 73210802 73211211 LTR7B 505 - 19 505 107153 29 17 16 79 1 0 43 19 52 17 44 75 26 0 5 29 0 10 105 chain 35102 chr12 133851895 + 73212089 73212555 LTR2B 499 - 0 485 76048 180 1 0 10 0 1 130 0 1 5 1 0 25 0 1 22 5 24 29 1 0 57 chain 189942 chr12 133851895 + 73214288 73216826 Harlequin-int 5206 - 1780 5071 20056 42 7 6 74 1 0 5 0 1 55 1 0 586 0 1 89 9 7 51 16 12 53 49 36 146 8 4 285 6 12 296 0 778 353 7 3 46 3 0 57 0 1 5 1 0 59 0 5 51 4 3 15 0 1 65 5 1 75 1 0 12 chain 33891 chr12 133851895 + 73218079 73218571 LTR2B 499 - 0 490 77791 115 34 15 32 0 1 17 1 0 10 0 1 14 0 2 47 3 0 116 0 19 39 1 0 57 1 0 5 chain 62773 chr12 133851895 + 73219062 73219813 LTR17 781 - 8 781 51549 36 13 36 374 1 0 327 chain 531920 chr12 133851895 + 73245145 73251351 L1PA4 6152 - 0 6149 3968 6 0 5 251 0 6 579 0 5 257 1 0 451 0 1 570 77 1 79 0 1 430 0 1 306 1 0 37 1 2 876 3 0 578 1 0 1094 0 4 374 0 1 234 chain 6360 chr12 133851895 + 73247260 73247333 L1PA4 6152 - 4456 4529 180970 73 chain 19698 chr12 133851895 + 73279381 73279607 L1PA7 6471 + 6242 6468 128107 226 chain 123479 chr12 133851895 + 73301326 73302671 L1PA3long 6157 - 419 1765 29887 449 0 1 896 chain 36185 chr12 133851895 + 73302671 73303078 L1PA3long 6157 + 5750 6157 74652 407 chain 59122 chr12 133851895 + 73325487 73326413 MER11A 1151 - 1 1151 53316 38 1 0 27 1 0 57 38 37 60 0 2 13 37 147 22 0 4 37 3 4 11 6 9 138 4 3 236 0 11 64 1 0 30 11 10 36 1 100 54 chain 26319 chr12 133851895 + 73344938 73345281 THE1B 368 - 11 366 98743 64 1 0 120 2 0 118 0 15 38 chain 16019 chr12 133851895 + 73355788 73356024 L1PA8 5853 + 5612 5847 138310 66 2 1 9 12 10 42 2 1 19 1 0 36 0 4 47 chain 39135 chr12 133851895 + 73368819 73369386 LTR10B1 532 - 0 532 70562 137 1 6 38 0 1 117 4 2 41 31 0 16 8 0 174 chain 18094 chr12 133851895 + 73380149 73380589 MER44B 551 + 68 503 132607 78 136 136 132 1 0 7 33 32 9 3 0 41 chain 44080 chr12 133851895 + 73394655 73395138 LTR7 482 + 0 482 64125 249 1 0 233 chain 4954 chr12 133851895 + 73395143 73395621 L1PB2 3958 - 231 691 39487 25 1 0 5 22 20 60 15 14 63 1 0 53 0 1 27 26 20 62 5 0 14 1 0 56 2 0 40 chain 30983 chr12 133851895 + 73395639 73396039 LTR7 482 - 12 482 82544 176 0 31 38 0 1 109 8 46 69 chain 291217 chr12 133851895 + 73397277 73401094 HERVH-int 3825 - 0 3825 13945 18 0 1 1256 2 1 131 37 84 233 10 15 38 1 0 38 0 4 226 0 1 122 0 4 183 1 0 10 0 2 28 9 0 204 15 0 446 0 1 26 4 0 31 21 0 9 116 109 24 1 0 10 1 0 10 0 3 22 1 0 50 10 12 107 1 2 31 1 0 333 chain 25430 chr12 133851895 + 73401104 73401507 LTR7 482 - 8 482 102541 107 1 2 73 0 31 36 0 1 41 0 51 17 59 46 69 chain 24480 chr12 133851895 + 73401508 73403870 L1PB2 3958 - 691 2049 39487 35 9 14 93 8 10 191 1 0 72 1 268 103 0 5 14 308 5 48 1 0 23 1 0 66 1017 39 37 0 1 212 0 1 32 1 0 89 chain 83186 chr12 133851895 + 73402502 73403475 LTR5_Hs 974 - 0 974 42257 62 2 1 343 0 1 201 0 1 365 chain 103230 chr12 133851895 + 73408828 73410142 L1PA7 6471 - 6 1330 35942 76 7 0 3 1 0 314 0 7 341 0 1 348 6 18 35 0 2 41 5 1 137 chain 11311 chr12 133851895 + 73428165 73428452 L1PB1 5432 + 5114 5374 155023 24 30 24 5 2 0 44 0 1 8 2 1 10 8 7 43 1 0 15 2 0 6 15 6 14 14 11 15 2 0 22 1 0 4 chain 22373 chr12 133851895 + 73434572 73434846 L1PA4 6152 - 9 281 118612 26 9 0 7 0 9 225 2 0 5 chain 193509 chr12 133851895 + 73444858 73447034 L1PA4 6152 - 0 2175 19731 6 0 5 523 9 0 1204 0 1 125 0 2 309 chain 13349 chr12 133851895 + 73460787 73460957 HERVL-int 5654 + 2159 2328 146889 31 1 0 138 chain 9751 chr12 133851895 + 73488396 73488521 THE1B 368 + 243 368 161838 125 chain 8838 chr12 133851895 + 73524633 73524808 L1PA15 4387 + 4091 4259 166444 13 1 0 25 22 21 35 1 0 17 0 1 4 4 0 10 5 4 38 chain 60653 chr12 133851895 + 73533332 73534067 L1PA7 6471 - 12 764 52493 32 3 15 92 1 2 32 2 5 487 0 1 86 chain 47806 chr12 133851895 + 73534067 73534635 L1PA7 6471 + 5148 5721 60564 475 0 5 93 chain 551167 chr12 133851895 + 73541397 73547425 L1PA2 6032 - 0 6032 1291 23 1 0 4213 0 5 1054 0 1 480 1 0 256 chain 4593 chr12 133851895 + 73556537 73556593 MER4A1 472 + 416 472 199717 56 chain 129850 chr12 133851895 + 73560581 73564436 MER4-int 2692 + 77 1989 28124 7 3 0 15 2 0 16 4 5 167 10 11 194 20 18 5 1 0 208 4 3 55 1 14 28 0 8 303 8 12 74 1689 0 130 0 4 40 0 39 19 0 3 147 6 4 191 0 1 32 318 0 114 1 2 43 chain 87705 chr12 133851895 + 73561718 73562706 L1PA4 6152 - 669 1671 40485 189 1 0 778 0 15 20 chain 57630 chr12 133851895 + 73562706 73563351 L1PA4 6152 + 5493 6138 54170 645 chain 4894 chr12 133851895 + 73568327 73568389 L1PA8 5853 - 0 62 196325 62 chain 550026 chr12 133851895 + 73587405 73593567 L1PA3long 6157 - 0 6155 1443 332 1 2 147 8 0 1686 1 0 819 1 0 1320 2 1 5 0 1 602 1 0 50 0 3 1187 chain 9855 chr12 133851895 + 73596286 73596576 THE1B 368 - 61 368 161317 64 40 42 12 21 20 34 72 88 47 chain 68378 chr12 133851895 + 73612140 73612950 L1PA7 6471 - 285 1093 49096 564 2 0 244 chain 17616 chr12 133851895 + 73612950 73613206 L1PA7 6471 + 6199 6468 133946 165 1 2 22 16 17 18 0 11 34 chain 42274 chr12 133851895 + 73634559 73635088 L1PA7 6471 + 5942 6470 66302 360 22 21 147 chain 341375 chr12 133851895 + 73645800 73650381 HERVL-int 5654 + 1043 5654 11857 235 1 2 284 8 15 249 21 22 118 1 3 84 4 9 284 7 8 179 0 1 115 0 1 17 24 27 173 8 7 167 8 6 15 0 1 611 12 10 220 7 5 21 23 24 15 0 2 73 7 9 258 8 7 106 0 1 531 0 1 4 1 0 152 1 3 109 1 0 37 0 1 172 0 1 46 0 3 6 0 2 17 21 22 120 chain 12127 chr12 133851895 + 73663123 73663254 L1PA4 6152 - 433 564 151703 131 chain 30195 chr12 133851895 + 73663255 73663602 L1PA4 6152 + 5796 6146 84204 206 1 4 140 chain 562351 chr12 133851895 + 73677434 73683448 L1HS 6032 - 3 6032 287 2986 1 0 480 0 1 2014 0 15 533 chain 165589 chr12 133851895 + 73697997 73699849 L1PA3long 6157 + 4294 6155 22571 66 0 2 948 0 4 88 0 3 750 chain 50591 chr12 133851895 + 73722033 73722665 PABL_A 660 + 0 660 58587 24 0 15 12 0 4 29 6 15 561 chain 17026 chr12 133851895 + 73732594 73732846 L1PA8 5853 + 5609 5853 135521 70 1 0 6 5 4 12 4 0 39 2 1 15 11 10 87 chain 404756 chr12 133851895 + 73738146 73744248 L1PA7 6471 - 2 5098 9954 531 0 8 154 13 10 141 1 3 135 47 0 9 0 3 372 0 1 35 0 11 381 0 4 407 0 1 324 5 4 35 0 19 120 4 6 720 5 6 46 0 1 77 994 0 15 0 4 61 0 1 103 7 6 177 19 20 174 0 1 13 1 2 4 1 0 298 0 1 147 24 1 316 0 2 163 0 1 4 7 6 12 chain 120012 chr12 133851895 + 73750521 73752084 L1PA8 5853 + 4293 5853 31055 8 0 1 290 0 1 29 0 1 204 4 5 175 0 2 75 0 2 396 0 1 79 1 0 27 12 6 13 2 0 64 0 1 9 18 15 43 2 1 11 10 10 91 chain 36366 chr12 133851895 + 73763842 73764262 L1PA5 6144 - 0 420 74409 420 chain 40094 chr12 133851895 + 73779647 73780127 L1PA7 6471 + 5957 6439 69193 350 5 6 24 0 1 101 chain 553986 chr12 133851895 + 73788589 73794610 L1PA2 6032 + 1 6030 953 740 0 1 866 0 4 1372 0 1 454 0 1 1660 0 1 929 chain 243050 chr12 133851895 + 73803508 73806373 L1PA6 6164 - 7 2883 16612 849 0 1 419 0 9 104 0 1 402 0 4 207 4 0 266 0 1 196 1 0 417 chain 12439 chr12 133851895 + 73806382 73806533 L1P1 4361 + 2248 2400 150496 113 0 1 38 chain 54145 chr12 133851895 + 73826020 73826738 L1PREC2 3366 - 1040 1753 56268 455 4 0 98 2 0 7 1 0 4 1 4 55 9 8 82 chain 63639 chr12 133851895 + 73845213 73845948 L1PA6 6164 - 12 745 51174 241 2 0 492 chain 14107 chr12 133851895 + 73858682 73858860 L1PA8A 6298 - 3025 3203 144187 178 chain 24289 chr12 133851895 + 73863652 73863958 L1PB1 5432 + 4764 5070 108709 48 0 1 238 2 1 18 chain 38457 chr12 133851895 + 73875202 73875653 LTR2 463 + 0 463 71505 361 1 13 89 chain 6093 chr12 133851895 + 73887371 73887464 L1MA7 2200 + 1548 1641 184471 9 1 0 48 2 3 33 chain 527765 chr12 133851895 + 73891831 73897981 L1PA5 6144 - 9 6144 4422 464 0 1 369 0 4 283 0 1 85 1 0 577 0 4 723 10 11 455 2 1 1318 0 5 1386 30 1 447 chain 9360 chr12 133851895 + 73924274 73924400 MER85 139 - 0 139 163751 29 5 18 92 chain 29527 chr12 133851895 + 73945385 73945781 MER51B 395 - 12 395 86537 138 1 0 105 0 1 99 13 0 40 chain 223609 chr12 133851895 + 73965885 73969492 L1P2 5180 + 4 3303 17678 79 27 15 40 12 11 90 24 33 34 192 27 14 41 14 85 19 0 58 0 1 6 28 15 12 133 57 32 37 20 90 21 0 50 0 15 242 0 1 5 2 1 33 36 39 167 0 3 429 1 0 25 5 27 268 0 1 276 13 0 445 1 2 15 8 12 61 1 0 329 1 0 120 chain 480283 chr12 133851895 + 74000000 74005609 L1PA5 6144 + 508 6128 7721 583 2 1 77 9 0 540 4 14 12 0 8 268 0 1 169 1 0 511 13 14 16 0 3 883 0 1 73 2 0 551 0 1 1060 1 0 834 chain 38269 chr12 133851895 + 74007185 74008182 MER4A 717 - 0 717 71752 52 130 189 120 310 0 181 46 16 59 0 1 99 chain 24510 chr12 133851895 + 74007511 74007796 AluSp 311 - 26 311 107491 285 chain 25201 chr12 133851895 + 74009704 74009983 AluYk4 311 + 20 299 103738 279 chain 21116 chr12 133851895 + 74015847 74016071 AluYb8 318 - 9 233 123510 224 chain 46159 chr12 133851895 + 74016185 74016759 L1PA8 5853 - 786 1360 61890 60 0 1 267 1 0 246 chain 58185 chr12 133851895 + 74016759 74017541 L1PA8 5853 + 5076 5853 53879 116 0 1 371 1 0 36 10 8 79 11 10 33 13 12 18 1 0 93 chain 6908 chr12 133851895 + 74052627 74052732 LTR44 473 + 361 466 178131 26 5 6 68 1 0 5 chain 370513 chr12 133851895 + 74064882 74070339 L1P2 5180 + 3 5173 11077 90 0 1 41 21 20 74 24 22 62 384 161 30 0 1 5 21 14 38 84 8 139 54 32 46 0 15 138 7 27 4 1 0 981 1 0 374 1 0 184 0 1 64 0 4 651 0 4 273 0 1 67 0 1 66 2 1 523 0 1 13 4 5 4 1 0 130 0 1 769 1 0 46 1 0 38 chain 27600 chr12 133851895 + 74082498 74082801 L1PA4 6152 + 5837 6140 94344 303 chain 278487 chr12 133851895 + 74098674 74102806 L1PA7 6471 + 2731 6452 14725 198 17 6 137 3 4 20 12 13 46 0 4 364 1 0 26 9 13 58 6 5 59 13 15 64 6 7 130 3 2 29 1 0 421 8 0 96 119 1 36 3 9 79 1 0 5 0 1 80 3 0 5 0 3 48 0 1 239 2 1 29 1 0 418 0 17 69 0 2 45 9 10 75 1 0 55 304 0 120 5 6 83 4 0 567 chain 20733 chr12 133851895 + 74124828 74125075 AluY 311 + 40 288 124839 92 0 1 155 chain 16502 chr12 133851895 + 74128012 74128201 L1PA7 6471 + 5947 6136 136911 189 chain 27354 chr12 133851895 + 74128201 74128521 L1PA7 6471 + 6137 6457 95098 320 chain 49684 chr12 133851895 + 74156267 74156848 LTR10C 591 + 0 583 59244 510 0 2 71 chain 10316 chr12 133851895 + 74205031 74205178 L1PA8 5853 + 5708 5853 159063 28 6 5 18 2 1 93 chain 26637 chr12 133851895 + 74219429 74219784 MLT2A1 477 + 0 362 97523 138 0 1 29 0 4 97 13 16 38 1 0 39 chain 442617 chr12 133851895 + 74219952 74225922 HERVL-int 5654 + 0 5643 8974 312 1 0 108 0 2 233 10 9 196 42 34 143 0 2 86 337 0 83 0 2 117 26 0 67 2 0 448 0 16 412 6 8 412 1 0 4 0 1 52 0 1 122 0 1 10 0 1 67 8 0 419 0 3 135 0 4 456 0 2 65 7 10 258 0 1 411 0 2 232 5 3 50 11 12 338 0 1 77 1 2 15 0 5 19 0 3 83 0 5 83 chain 8647 chr12 133851895 + 74225937 74226044 MLT2A1 477 + 4 111 167497 107 chain 3390 chr12 133851895 + 74226641 74226683 HERVL-int 5654 - 829 872 217293 13 0 1 29 chain 7605 chr12 133851895 + 74226854 74226959 MLT2A1 477 - 362 475 173514 42 1 0 22 1 10 39 chain 9990 chr12 133851895 + 74227113 74227228 THE1C-int 1605 + 1485 1600 160631 115 chain 36086 chr12 133851895 + 74240105 74240547 L1PA7 6471 - 1108 1561 74014 30 1 0 262 0 1 40 6 17 103 chain 88071 chr12 133851895 + 74240547 74241631 L1PA7 6471 + 5376 6457 40346 78 0 3 164 9 8 241 19 13 256 0 1 317 chain 41841 chr12 133851895 + 74246989 74247439 SVA_F 1814 - 0 449 66839 12 1 0 437 chain 32855 chr12 133851895 + 74254321 74254760 MLT2A1 477 - 0 462 79447 56 8 27 31 2 0 5 0 2 33 1 0 150 0 4 28 0 1 125 chain 12151 chr12 133851895 + 74262039 74262175 L1PA4 6152 - 632 768 151605 136 chain 54945 chr12 133851895 + 74262179 74262792 L1PA4 6152 + 5539 6152 55746 613 chain 25649 chr12 133851895 + 74281313 74281586 AluYb8 318 + 34 307 101504 273 chain 67898 chr12 133851895 + 74288890 74289660 L1PA5 6144 - 582 1425 49289 261 0 4 65 0 8 144 1 62 299 chain 50139 chr12 133851895 + 74289660 74290234 L1PA5 6144 + 5561 6135 58911 574 chain 9771 chr12 133851895 + 74293984 74294100 L1PA4 6152 + 6034 6152 161741 110 0 2 6 chain 18200 chr12 133851895 + 74297363 74297577 L1PA5 6144 - 9 223 132329 214 chain 369873 chr12 133851895 + 74317933 74322274 L1P1 4361 + 4 4341 11099 427 0 1 242 6 3 1116 1 3 1887 1 0 467 1 0 155 1 0 23 2 1 12 chain 22293 chr12 133851895 + 74322402 74322647 L1PA5 6144 + 5046 5291 118941 245 chain 19646 chr12 133851895 + 74322647 74322873 L1PA5 6144 + 5295 5521 128263 226 chain 53919 chr12 133851895 + 74322873 74323482 L1PA5 6144 + 5523 6132 56419 609 chain 56374 chr12 133851895 + 74363682 74364389 L1PA7 6471 - 2360 3069 54629 209 0 4 58 5 4 288 0 4 14 5 1 16 11 10 101 chain 192349 chr12 133851895 + 74364389 74366737 L1PA7 6471 + 4113 6468 19828 145 0 5 34 4 1 375 0 4 620 2 1 301 0 4 15 19 12 303 1 3 321 0 3 208 chain 534857 chr12 133851895 + 74371707 74377676 L1PA3long 6157 + 1 6157 3611 141 0 60 162 0 1 387 24 152 48 1 0 1374 1 0 936 2 1 1019 0 1 1874 chain 28618 chr12 133851895 + 74389655 74389961 AluYa5 310 + 0 304 90663 132 2 0 172 chain 11634 chr12 133851895 + 74403988 74404128 MER41A 554 - 166 305 153756 125 1 0 14 chain 3780 chr12 133851895 + 74409612 74409678 L1MA8 2339 - 79 141 210657 4 1 0 23 0 1 17 5 1 16 chain 22156 chr12 133851895 + 74419430 74419688 AluY 311 + 5 264 119566 127 0 1 131 chain 370665 chr12 133851895 + 74428665 74433847 HERVL-int 5654 + 788 5654 11071 78 0 5 38 6 0 215 3 2 207 16 36 355 8 10 70 0 1 215 0 3 57 0 9 256 0 1 284 2 1 141 0 1 76 0 2 25 15 16 318 2 1 290 0 1 116 0 1 109 0 1 29 10 17 59 0 2 140 0 1 103 2 1 12 20 21 481 354 0 630 16 5 298 32 32 94 chain 23454 chr12 133851895 + 74438455 74438849 L1PB2 3958 + 3467 3838 113355 75 1 3 51 6 7 14 1 0 4 22 0 7 0 1 48 6 5 73 2 0 19 10 9 55 chain 11899 chr12 133851895 + 74445870 74446058 MLT2B4 540 - 350 540 152610 23 7 6 36 11 12 18 0 1 55 0 1 38 chain 65874 chr12 133851895 + 74446082 74446880 L1PA7 6471 + 5345 6147 50154 279 1 5 69 0 2 93 0 1 170 3 0 183 chain 335849 chr12 133851895 + 74451654 74455483 L1PA5 6144 + 2308 6140 12003 856 1 0 644 0 1 121 3 4 496 0 1 281 4 1 263 0 1 369 0 1 186 0 1 437 5 6 163 chain 16527 chr12 133851895 + 74457656 74457864 HERVL-int 5654 + 1507 1714 136841 41 4 3 163 chain 70296 chr12 133851895 + 74457871 74458755 HERVL-int 5654 + 1723 2624 48268 245 1 2 244 0 13 277 8 11 109 chain 6516 chr12 133851895 + 74458793 74458883 HERVL-int 5654 + 2657 2747 181122 90 chain 25143 chr12 133851895 + 74458883 74459226 HERVL-int 5654 + 2748 3100 104047 164 0 6 35 20 23 124 chain 37072 chr12 133851895 + 74459230 74459706 HERVL-int 5654 + 3106 3582 73428 476 chain 52838 chr12 133851895 + 74459710 74460380 HERVL-int 5654 + 3587 4263 57114 586 6 11 9 0 1 69 chain 274909 chr12 133851895 + 74460668 74464501 L1PA10 4194 + 405 4159 14930 4 0 1 65 12 9 4 1 0 34 18 21 910 0 1 17 1 0 138 4 3 12 1 0 32 4 3 358 0 8 198 0 7 154 11 18 39 0 1 36 0 4 147 6 7 104 10 11 89 0 1 137 120 12 265 1 0 4 0 1 468 0 1 52 0 5 245 3 4 46 6 4 7 0 1 19 15 12 26 1 0 9 chain 32942 chr12 133851895 + 74467544 74467951 L1PA7 6471 - 3 413 79304 174 8 11 225 chain 85957 chr12 133851895 + 74484411 74485360 L1PA3long 6157 - 1140 2091 41104 566 0 1 203 0 1 180 chain 99858 chr12 133851895 + 74485360 74486466 L1PA3long 6157 + 5050 6157 36818 610 0 1 496 chain 2822 chr12 133851895 + 74491344 74491416 MLT2B1 522 - 130 250 228433 26 27 75 19 chain 42215 chr12 133851895 + 74501396 74501972 HSMAR1 1287 - 706 1287 66381 24 5 8 101 2 1 22 4 0 296 1 0 4 11 18 80 0 1 26 chain 57635 chr12 133851895 + 74504206 74504915 HERVL-int 5654 - 0 710 54169 239 0 1 187 1 0 213 0 1 69 chain 100645 chr12 133851895 + 74520056 74521176 L1PA4 6152 - 9 1129 36596 1120 chain 23004 chr12 133851895 + 74537935 74538205 AluY 311 + 40 308 115600 93 2 0 175 chain 25463 chr12 133851895 + 74539685 74540030 L1PA8 5853 - 0 338 102391 93 1 0 19 2 1 50 14 12 70 2 0 44 1 0 49 chain 73752 chr12 133851895 + 74568527 74569609 MER11A 1151 - 0 1145 46648 163 6 7 60 0 1 37 83 0 9 2 25 13 0 26 118 7 9 144 0 1 94 0 1 149 4 0 60 0 4 52 8 0 24 0 99 49 chain 113610 chr12 133851895 + 74593693 74595235 THE1B-int 1605 - 0 1603 33199 11 2 1 29 0 1 379 0 1 159 5 4 59 0 1 120 13 29 271 0 15 59 22 50 122 24 25 267 chain 41314 chr12 133851895 + 74613386 74613902 L1PA7 6471 + 5936 6457 67515 139 0 8 60 3 0 131 14 14 169 chain 81556 chr12 133851895 + 74653753 74654651 MER11D 897 + 0 897 42954 287 1 0 610 chain 32143 chr12 133851895 + 74658088 74658525 LTR2 463 + 1 463 80622 54 0 3 86 2 3 15 7 27 32 0 5 39 4 0 6 0 1 167 1 0 24 chain 523820 chr12 133851895 + 74659294 74666341 HERVE_a-int 7009 + 135 6990 4785 21 3 0 28 1 0 73 13 9 21 11 8 6 1 0 8 1 0 14 27 17 4 1 0 9 1 0 6 3 1 18 28 0 35 4 2 23 2 1 44 1 0 21 1 0 53 1 0 35 1 0 62 11 4 32 1 0 12 1 0 15 2 1 34 1 0 9 1 0 55 2 0 27 1 0 66 1 0 27 1 0 8 1 0 73 2 1 29 4 3 39 2 0 15 1 0 52 1 0 21 1 0 15 2 1 5 1 0 12 8 4 15 2 1 6 1 0 15 1 0 23 1 0 5 1 0 7 1 0 10 1 0 6 1 0 4 1 0 57 2 0 57 1 0 23 4 3 13 1 0 114 2 1 19 1 0 6 12 15 9 2 1 18 1 0 10 2 1 4 1 0 20 1 0 41 1 0 40 1 0 60 1 0 36 1 0 7 2 1 35 1 0 43 1 0 24 1 0 16 1 0 24 1 0 12 1 0 94 2 1 25 6 4 29 37 30 8 1 0 144 1 0 14 1 0 37 0 1 169 1 0 364 0 4 36 1 0 43 0 3 6 0 4 29 2 0 421 1 0 79 1 0 39 0 1 879 0 1 504 2 0 328 9 0 114 2 1 25 1 0 9 1 0 67 1 2 4 1 0 8 1 0 41 1 0 22 2 1 4 0 1 82 1 0 12 1 0 258 2 0 90 13 12 13 1 0 5 1 0 56 3 1 32 4 3 77 2 0 136 1 0 44 1 0 32 1 0 10 1 0 16 1 0 5 2 0 7 2 1 36 6 5 16 5 4 42 2 1 4 1 0 27 7 5 55 2 1 33 5 2 54 3 1 27 7 6 24 1 0 6 3 1 13 1 0 21 5 3 34 4 2 15 32 24 24 chain 34445 chr12 133851895 + 74666368 74666801 LTR2 463 + 0 463 77000 37 0 10 115 7 27 190 0 6 6 6 0 72 chain 440934 chr12 133851895 + 74670008 74675711 HERVL-int 5654 + 0 5636 9027 56 9 13 35 0 1 369 1 0 305 1 2 148 10 11 98 0 2 790 3 4 238 18 0 135 90 29 368 11 0 168 31 32 46 0 2 119 1 2 233 0 1 212 8 9 76 1 2 106 6 0 403 0 3 6 4 1 421 6 12 16 6 4 175 6 7 354 2 1 66 1 2 328 0 5 14 0 1 119 0 2 84 chain 5275 chr12 133851895 + 74672231 74672286 HERVL-int 5654 - 3049 3104 192264 55 chain 27573 chr12 133851895 + 74675729 74676109 MLT2A1 477 + 0 384 94426 85 1 0 4 1 2 51 8 9 18 1 5 49 1 0 161 chain 10616 chr12 133851895 + 74681562 74681686 L1PA4 6152 + 6013 6137 157746 124 chain 28611 chr12 133851895 + 74742080 74742377 AluYa5 310 - 13 310 90691 297 chain 322320 chr12 133851895 + 74745210 74748918 L1PA5 6144 - 0 3744 12507 774 0 1 342 0 1 101 0 1 320 0 1 21 1 0 151 0 1 641 0 39 74 1 0 938 8 0 313 1 4 17 1 0 4 chain 26491 chr12 133851895 + 74750891 74751186 L1PA2 6032 - 0 294 98076 150 1 0 144 chain 16462 chr12 133851895 + 74755385 74755729 THE1D 372 + 16 353 137034 24 16 7 22 40 41 56 43 45 13 1 0 129 chain 843 chr12 133851895 + 74780655 74780769 LTR1B 797 - 344 456 171337 18 3 5 9 3 0 11 1 0 69 chain 12339 chr12 133851895 + 74781405 74781549 L1PA2 6032 - 0 159 150862 21 0 15 123 chain 13044 chr12 133851895 + 74781549 74781687 L1PA2 6032 + 5702 5840 148058 138 chain 6396 chr12 133851895 + 74781743 74781932 HUERS-P2-int 2744 - 3 178 182064 26 2 0 12 10 6 8 1 0 16 0 2 16 3 0 25 1 0 4 50 45 15 chain 95282 chr12 133851895 + 74796541 74797682 LTR12C 1709 + 0 1696 38010 48 2 0 529 2 1 121 0 159 253 1 0 5 3 1 56 0 402 121 chain 48629 chr12 133851895 + 74821312 74822010 L1PA8 5853 - 0 691 60008 93 1 0 15 6 5 51 1 0 9 6 5 47 1 2 14 12 10 38 1 0 164 11 9 65 1 2 162 chain 26580 chr12 133851895 + 74822023 74822376 L1PA8 5853 + 4779 5140 97722 227 1 7 61 8 10 56 chain 25139 chr12 133851895 + 74822857 74823163 AluY 311 + 5 305 104071 121 0 1 169 7 0 9 chain 93235 chr12 133851895 + 74824194 74825247 L1PA4 6152 + 5093 6151 38587 763 0 1 39 1 2 41 0 3 209 chain 20513 chr12 133851895 + 74839896 74840173 AluYc 301 + 4 283 125585 102 1 0 14 7 9 139 0 1 14 chain 11997 chr12 133851895 + 74847395 74847645 THE1B 368 - 62 320 152212 56 73 81 38 6 1 7 0 4 6 0 1 64 chain 117427 chr12 133851895 + 74863253 74864793 L1PA10 4194 + 2597 4161 31985 32 20 21 13 9 12 404 1 9 41 0 13 291 5 8 675 4 1 33 1 0 11 chain 14168 chr12 133851895 + 74872953 74873295 THE1B 368 - 20 368 143988 28 15 14 62 1 0 5 124 132 107 chain 8610 chr12 133851895 + 74873392 74873490 L1PA5 6144 + 6040 6138 167670 98 chain 5855 chr12 133851895 + 74884852 74884916 L1P1 4361 - 2218 2282 186637 64 chain 211545 chr12 133851895 + 74888370 74890760 L1PA5 6144 + 3749 6144 18395 592 0 4 283 1 0 389 0 1 202 0 1 923 chain 492921 chr12 133851895 + 74897829 74903319 L1PA3long 6157 - 525 6157 7229 472 0 5 1466 1 0 517 1 2 2266 0 128 187 2 0 125 15 10 31 0 11 83 0 3 173 0 1 81 0 1 70 chain 28476 chr12 133851895 + 74930451 74930764 AluYa5 310 - 0 310 91282 184 1 0 28 3 1 97 chain 123337 chr12 133851895 + 74981310 74982727 SVA_B 1603 - 0 1603 29934 588 0 1 38 1 0 28 3 130 141 4 0 166 0 39 423 1 25 24 chain 189253 chr12 133851895 + 75022840 75025146 L1PA7 6471 - 3 2313 20122 32 24 23 99 0 1 233 0 4 455 2 0 272 1 0 394 0 1 79 0 1 119 0 1 80 0 1 4 2 1 510 chain 21266 chr12 133851895 + 75025152 75025408 L1PA7 6471 + 3895 4151 122972 256 chain 3069 chr12 133851895 + 75033101 75033153 L1MA8 2339 + 2219 2267 223582 14 2 0 25 1 0 4 1 0 5 chain 24531 chr12 133851895 + 75048645 75048986 THE1A 353 - 0 353 107373 53 7 0 155 6 26 8 1 0 111 chain 518662 chr12 133851895 + 75069862 75076312 L1PA7 6471 + 3 6466 5314 133 28 21 112 2 0 92 1 2 86 0 1 164 1 0 4 4 6 27 5 6 476 0 1 110 0 1 306 8 0 184 4 69 333 1 0 22 0 1 130 2 1 345 58 0 64 1 2 874 0 2 33 0 1 212 0 5 7 12 7 137 0 1 4 1 0 16 5 10 82 0 1 111 0 1 63 0 1 255 5 9 1080 0 3 691 1 0 158 chain 86062 chr12 133851895 + 75081379 75082457 MER11B 1079 - 5 1072 41133 15 5 6 23 1 0 138 1 0 122 8 2 173 7 6 330 3 0 252 chain 20018 chr12 133851895 + 75088717 75088964 AluY 311 + 15 258 127088 108 5 1 134 chain 65105 chr12 133851895 + 75094095 75094822 L1PA4 6152 + 5405 6142 50525 76 0 10 651 chain 16053 chr12 133851895 + 75120521 75120701 L1PA3long 6157 - 238 419 138207 95 0 1 85 chain 16573 chr12 133851895 + 75138730 75138927 L1PA7 6471 - 15 212 136728 197 chain 54429 chr12 133851895 + 75142225 75142841 L1PA4 6152 - 826 1446 56018 98 0 1 46 1 0 380 0 1 83 0 3 8 chain 73008 chr12 133851895 + 75142841 75143665 L1PA4 6152 + 5313 6140 47023 16 0 1 577 6 8 225 chain 4184 chr12 133851895 + 75145084 75145128 Tigger1 2417 + 1154 1198 204783 44 chain 232998 chr12 133851895 + 75179072 75181980 L1PA7 6471 - 21 2952 17143 66 0 4 70 21 12 151 6 8 518 2 0 6 0 1 5 2 0 614 10 11 191 3 0 5 0 3 108 0 8 125 0 1 269 0 1 134 16 32 494 0 1 88 0 1 4 chain 132966 chr12 133851895 + 75181980 75183615 L1PA7 6471 + 1896 3513 27371 119 0 10 14 0 1 601 35 6 517 5 6 119 0 1 4 1 0 200 1 0 19 chain 20798 chr12 133851895 + 75190514 75190852 THE1B 368 - 0 336 124608 115 7 47 10 37 0 4 6 0 6 0 2 10 3 2 140 chain 28977 chr12 133851895 + 75206178 75206504 L1PA3long 6157 + 5831 6156 89104 309 1 0 16 chain 68948 chr12 133851895 + 75207939 75208941 LTR12 884 + 5 884 48840 20 1 0 230 125 0 85 0 1 36 2 0 33 9 11 195 0 1 202 1 2 63 chain 30057 chr12 133851895 + 75229608 75230004 THE1B-int 1605 + 30 425 84635 84 16 15 296 chain 13293 chr12 133851895 + 75233905 75234054 L1PA4 6152 + 5994 6143 147116 149 chain 5450 chr12 133851895 + 75250362 75250430 L1MA4A 3247 - 147 215 190531 68 chain 12479 chr12 133851895 + 75261800 75262336 L1PB4 2604 - 117 314 150344 20 0 14 46 0 1 20 2 0 5 352 0 91 chain 565973 chr12 133851895 + 75268648 75274681 L1HS 6032 + 0 6032 158 341 4 0 2708 1 0 2111 0 4 868 chain 11604 chr12 133851895 + 75287490 75287627 L1PA7 6471 + 6080 6218 153874 56 0 1 81 chain 20308 chr12 133851895 + 75287628 75287870 L1PA7 6471 + 6229 6467 126211 232 4 0 6 chain 52676 chr12 133851895 + 75317473 75318046 L1PA3long 6157 + 5584 6157 57200 573 chain 66503 chr12 133851895 + 75320164 75320949 L1PA6 6164 + 5353 6145 49864 233 0 6 6 0 1 546 chain 56586 chr12 133851895 + 75329553 75330183 L1PA4 6152 - 9 639 54793 630 chain 23910 chr12 133851895 + 75343603 75343880 L1P1 4361 - 33 308 110861 23 1 0 154 1 0 98 chain 65397 chr12 133851895 + 75343880 75344622 L1PA4 6152 + 5408 6151 50378 73 1 0 498 1 2 165 0 1 4 chain 15404 chr12 133851895 + 75347641 75347906 Tigger1 2417 - 2011 2278 140191 44 6 0 6 34 40 127 4 6 44 chain 105297 chr12 133851895 + 75389944 75391125 L1PA4 6152 + 4955 6143 35426 349 0 4 11 0 1 56 1 3 764 chain 248547 chr12 133851895 + 75395149 75397901 L1PA3long 6157 - 15 2770 16332 2197 0 1 322 0 2 233 chain 25189 chr12 133851895 + 75406222 75406584 MLT2A1 477 + 0 477 103803 169 4 1 10 1 2 8 1 0 14 0 1 59 16 79 42 0 54 38 chain 234632 chr12 133851895 + 75406584 75409561 HERVL-int 5654 + 0 5518 17056 104 0 1 4 1 0 620 13 11 883 0 1 60 18 19 78 0 1 430 0 1 523 2 579 95 5 1966 58 0 1 83 chain 240441 chr12 133851895 + 75409948 75413385 MER61-int 3695 - 0 3694 16747 28 31 32 68 9 10 205 3 0 160 0 2 23 5 6 10 2 1 150 4 5 97 1 0 36 1 0 99 1 0 97 0 1 53 2 0 192 1 0 23 96 259 32 0 3 298 1 0 103 0 3 75 0 5 81 0 7 266 1 2 203 0 1 29 0 4 219 13 10 63 0 96 89 1 2 135 35 21 119 2 1 225 1 0 8 19 15 22 chain 5878 chr12 133851895 + 75411276 75411344 MER61-int 3695 + 2766 2834 186405 68 chain 7214 chr12 133851895 + 75414429 75414509 HERVL-int 5654 + 5574 5654 175978 80 chain 30824 chr12 133851895 + 75414509 75414949 MLT2A1 477 + 0 477 82825 167 6 3 11 0 1 22 1 8 163 17 53 10 4 0 39 chain 23271 chr12 133851895 + 75420048 75420321 AluY 311 + 36 311 114337 95 0 2 178 chain 4660 chr12 133851895 + 75431808 75431864 L1MC1 2226 + 1984 2038 198951 8 2 0 46 chain 25429 chr12 133851895 + 75462909 75463206 AluSp 311 - 7 302 102546 184 2 0 111 chain 26359 chr12 133851895 + 75478131 75478490 THE1A 353 + 3 353 98575 76 0 1 28 1 0 94 1 0 97 13 5 49 chain 27024 chr12 133851895 + 75508636 75508942 AluYf4 310 - 3 310 96208 126 0 1 180 chain 21533 chr12 133851895 + 75547443 75547753 Tigger2 2703 - 88 417 122034 28 7 17 17 1 6 49 0 1 17 5 4 4 0 1 115 0 3 67 chain 20195 chr12 133851895 + 75552808 75553058 L1PA7 6471 + 6220 6469 126541 101 3 2 146 chain 29547 chr12 133851895 + 75585311 75585628 AluYb8 318 - 0 318 86429 212 0 1 105 chain 25733 chr12 133851895 + 75606250 75606535 L1PA2 6032 + 5740 6028 101153 76 0 3 209 chain 135254 chr12 133851895 + 75612405 75614028 L1PA6 6164 - 2 1622 26967 165 0 7 208 0 1 193 0 3 214 0 2 31 48 31 76 0 1 688 chain 114651 chr12 133851895 + 75639947 75641203 L1PA3long 6157 - 0 1268 32902 963 0 11 244 0 1 49 chain 33318 chr12 133851895 + 75665255 75665789 MLT2A2 560 - 0 560 78708 39 66 79 29 3 14 180 24 27 12 1 0 180 chain 5829 chr12 133851895 + 75697674 75697901 MLT1D 503 + 255 503 186871 45 48 0 10 88 156 6 0 1 30 chain 2643 chr12 133851895 + 75701266 75701299 L1MA4 2864 + 2740 2772 231112 26 1 0 6 chain 6082 chr12 133851895 + 75701944 75702032 MER51A 677 + 182 261 184563 17 9 0 62 chain 4038 chr12 133851895 + 75717718 75717829 MER63C 923 + 336 451 206813 15 1 4 22 41 42 32 chain 28073 chr12 133851895 + 75725347 75725642 AluYa5 310 - 15 310 92750 295 chain 41367 chr12 133851895 + 75732896 75733605 L1PA11 4918 - 289 973 67449 18 63 47 10 1 0 13 50 39 13 1 0 11 8 6 27 0 1 39 0 2 6 11 5 66 0 5 136 0 5 106 1 0 129 chain 215391 chr12 133851895 + 75745625 75748476 L1PA10 4194 + 1270 4150 18140 60 4 6 19 8 7 114 5 4 236 0 5 299 7 7 140 0 2 57 0 4 47 0 2 409 4 0 13 0 5 44 0 1 325 0 1 57 0 3 220 1 2 42 3 0 39 0 1 163 12 8 37 7 1 79 11 32 114 5 6 169 0 2 61 8 5 11 0 1 9 1 0 11 chain 8028 chr12 133851895 + 75765658 75765786 HERVL-int 5654 - 504 632 170890 6 1 0 27 0 1 16 8 9 5 1 0 64 chain 24328 chr12 133851895 + 75774815 75775181 THE1A 353 + 0 353 108504 110 1 0 145 27 23 21 18 10 44 chain 35392 chr12 133851895 + 75799035 75799538 LTR3B_ 500 - 0 500 75682 88 3 6 24 0 5 25 6 4 46 1 0 206 21 13 83 chain 94177 chr12 133851895 + 75806105 75807135 L1PA4 6152 + 5121 6151 38306 1030 chain 27516 chr12 133851895 + 75812627 75812948 L1PA7 6471 + 6144 6464 94611 168 0 2 145 3 0 5 chain 73155 chr12 133851895 + 75817349 75818240 L1PA7 6471 - 1 893 46941 9 2 0 123 0 1 19 2 3 613 1 3 84 1 0 37 chain 121509 chr12 133851895 + 75821767 75823386 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133851895 + 76143346 76143492 LTR8 732 + 586 732 151073 146 chain 3223 chr12 133851895 + 76188283 76188460 L1ME1 1623 + 1051 1229 220537 26 111 113 19 2 1 19 chain 62213 chr12 133851895 + 76223512 76224462 L1PREC2 3366 + 2028 2951 51794 211 2 1 455 3 0 34 0 1 8 24 21 31 21 18 42 1 0 4 3 0 13 51 39 16 2 0 29 chain 128766 chr12 133851895 + 76268385 76270392 L1PB1 5432 + 3451 5430 28373 277 2 4 230 0 1 4 1 0 17 6 9 36 7 10 172 1 0 201 0 2 215 20 14 71 1 0 91 0 1 16 0 39 13 35 5 212 17 12 10 1 0 25 1 0 4 3 2 12 2 0 3 2 0 9 3 1 43 8 7 18 1 0 42 86 67 24 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 17492 chr12 133851895 + 76292411 76292633 AluSc 308 + 66 293 134284 115 3 8 104 chain 29158 chr12 133851895 + 76298937 76299244 AluYg6 310 - 3 310 88267 307 chain 177293 chr12 133851895 + 76334785 76337181 SVA_D 2077 + 0 2077 21224 22 3 0 897 50 0 28 90 1 88 0 2 175 3 0 121 0 98 444 274 0 201 chain 4073 chr12 133851895 + 76335709 76335757 SVA_D 2077 + 958 1006 74917 48 chain 7637 chr12 133851895 + 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38 28 0 21 43 41 11 6 8 60 chain 6303 chr12 133851895 + 78183201 78183303 MER30 238 - 0 115 182767 19 9 10 23 0 12 51 chain 67362 chr12 133851895 + 78187093 78187993 L1PA8 5853 - 0 885 49502 55 5 0 37 2 1 19 2 1 48 1 0 13 7 4 9 0 1 52 7 5 44 1 0 334 0 1 52 1 0 31 0 1 134 3 1 10 1 0 32 chain 448391 chr12 133851895 + 78196948 78202789 L1PA8 5853 - 66 5803 8803 27 1 0 7 0 17 12 40 1 30 1 0 14 1 0 70 2 0 45 1 0 553 0 2 7 4 0 115 25 0 28 6 11 164 0 1 14 24 1 326 3 2 241 1 3 14 0 1 88 1 3 149 0 1 452 0 1 516 0 1 805 7 0 48 1 0 5 4 1 104 0 2 147 1 0 4 11 12 321 1 0 159 0 3 356 0 1 291 8 12 290 3 7 152 8 9 33 59 20 6 1 0 11 2 0 21 chain 9608 chr12 133851895 + 78253301 78253409 L1PA2 6032 + 5922 6030 162545 108 chain 72828 chr12 133851895 + 78265073 78265952 L1PA7 6471 - 4 884 47113 145 2 3 22 0 2 5 2 0 703 chain 11878 chr12 133851895 + 78296162 78296298 L1PA4 6152 - 2163 2299 152338 136 chain 191572 chr12 133851895 + 78296298 78298423 L1PA4 6152 + 4014 6141 19903 1639 0 1 342 7 8 137 chain 3212 chr12 133851895 + 78305946 78305985 MLT1C 463 + 63 103 220708 22 0 1 17 chain 138110 chr12 133851895 + 78344285 78345858 L1PA5 6144 + 4570 6144 26469 604 1 0 312 0 1 444 0 1 212 chain 10202 chr12 133851895 + 78421411 78421722 Tigger4 2445 + 64 341 159615 16 50 36 10 1 17 6 1 0 11 1 0 11 21 12 40 2 0 9 57 34 75 chain 35237 chr12 133851895 + 78425293 78425672 L1PA2 6032 + 5647 6026 75876 379 chain 491895 chr12 133851895 + 78436714 78443442 L1PA7 6471 - 1 6465 7278 65 2 0 9 3 5 70 2 0 136 0 3 215 2 0 5 5 7 236 1 0 36 1 0 59 0 3 872 0 1 176 0 1 287 1 2 174 302 0 272 1 0 312 0 1 6 1 2 29 1 2 117 1 0 730 1 2 72 2 347 62 322 0 21 0 1 67 4 5 416 4 3 44 3 0 246 0 1 6 3 1 73 0 1 6 8 7 853 1 0 21 0 12 364 chain 111946 chr12 133851895 + 78464333 78465574 L1PA2 6032 - 2 1323 33679 858 1 0 206 1 82 175 chain 192462 chr12 133851895 + 78465574 78467661 L1PA2 6032 + 2624 4708 19818 1682 1 0 207 2 0 195 chain 29410 chr12 133851895 + 78472164 78472474 AluYa5 310 - 0 310 87024 310 chain 25221 chr12 133851895 + 78475716 78476074 THE1B 368 + 0 368 103634 40 0 5 124 1 0 16 18 24 4 0 1 16 1 0 138 chain 22226 chr12 133851895 + 78597891 78598142 L1PA4 6152 + 5898 6148 119226 102 1 0 148 chain 512672 chr12 133851895 + 78645807 78652044 L1PA5 6144 - 0 6144 5904 11 3 1 583 6 0 255 1 0 81 0 1 173 4 0 122 0 2 279 0 5 280 0 8 62 0 2 28 0 1 1054 1 0 26 1 0 467 4 9 848 138 4 397 0 3 271 9 0 137 1 0 4 1 2 26 1 0 167 0 17 49 16 17 603 0 14 35 0 1 45 0 6 48 chain 52319 chr12 133851895 + 78657108 78657779 L1P3 4156 - 161 845 57417 209 1 2 127 0 3 67 0 4 8 1 6 24 3 1 44 2 0 17 3 6 25 0 1 140 chain 89665 chr12 133851895 + 78691930 78692914 L1PA3long 6157 - 245 1229 39760 984 chain 11611 chr12 133851895 + 78699174 78699328 LTR19A 502 - 349 502 153850 115 5 4 34 chain 8997 chr12 133851895 + 78704719 78704820 L1PA5 6144 + 5836 5936 165616 55 1 0 45 chain 22948 chr12 133851895 + 78714390 78714751 THE1B 368 + 13 368 115872 34 0 1 56 18 19 46 31 24 100 1 0 75 chain 50793 chr12 133851895 + 78749328 78750592 MER4E1 777 - 8 777 58441 211 8 16 90 291 0 31 8 0 66 228 0 21 6 0 80 3 5 60 4 37 60 1 0 22 8 5 37 4 3 25 chain 19361 chr12 133851895 + 78771723 78772074 THE1B 368 - 11 368 129042 22 30 29 63 3 11 18 0 1 4 35 32 59 9 10 108 chain 24622 chr12 133851895 + 78826266 78826597 THE1B 368 - 0 368 106872 118 14 52 29 1 0 169 chain 20085 chr12 133851895 + 78826853 78827096 L1PA6 6164 - 2 243 126870 8 2 0 233 chain 60581 chr12 133851895 + 78853057 78853793 LTR17 781 + 0 781 52527 326 0 1 24 0 1 35 0 11 6 0 11 257 1 0 39 0 22 48 chain 7215 chr12 133851895 + 78853924 78854036 LTR23 429 - 29 140 175967 52 6 5 28 2 0 5 0 2 19 chain 218682 chr12 133851895 + 78890458 78892979 L1PA5 6144 - 2 2533 17961 791 5 4 46 0 4 22 6 10 765 1 0 155 0 4 730 chain 556671 chr12 133851895 + 78900211 78906364 L1PA3long 6157 + 0 6157 650 769 0 1 826 0 1 720 0 1 372 0 1 40 0 2 1447 2 0 1977 chain 74614 chr12 133851895 + 78908302 78909234 L1PA7 6471 + 5508 6459 46203 61 16 19 11 0 4 17 0 11 178 0 3 33 0 1 478 3 0 135 chain 447566 chr12 133851895 + 78913031 78918853 L1PA8 5853 + 52 5847 8827 18 3 1 11 46 0 7 10 19 159 2 0 38 0 4 118 4 3 195 0 2 58 3 7 81 3 0 6 0 3 13 1 2 340 0 1 4 22 18 120 0 3 175 0 1 81 0 11 35 1 2 228 0 3 186 0 4 17 52 1 456 0 3 400 1 0 43 0 4 37 1 4 220 0 4 24 1 0 317 6 4 30 1 3 434 1 0 330 3 2 124 1 18 86 0 1 175 1 2 125 0 1 133 0 2 75 9 15 326 0 2 137 1 0 45 2 0 69 12 11 27 0 1 26 1 0 17 2 1 86 chain 23701 chr12 133851895 + 78940486 78940783 L1PA5 6144 + 5845 6130 112026 139 13 1 145 chain 131091 chr12 133851895 + 79002269 79003798 L1P1 4361 + 1 3446 27836 1484 0 1916 45 chain 25921 chr12 133851895 + 79003997 79004290 L1PA4 6152 + 5856 6148 100332 42 1 0 250 chain 89382 chr12 133851895 + 79042000 79043046 MER11C 1089 + 0 1046 39851 570 13 12 10 0 1 453 chain 60920 chr12 133851895 + 79043079 79043734 L1PA2 6032 - 13 668 52378 655 chain 23206 chr12 133851895 + 79117623 79117914 AluSc 308 - 11 298 114659 18 0 1 174 5 0 94 chain 37637 chr12 133851895 + 79149431 79149872 L1PA7 6471 + 6022 6464 72640 114 0 1 327 chain 91980 chr12 133851895 + 79155581 79156596 L1PA3long 6157 - 0 1019 38975 869 0 4 146 chain 19435 chr12 133851895 + 79156596 79156803 L1PA3long 6157 + 4916 5123 128859 207 chain 14100 chr12 133851895 + 79170932 79171138 L1PA5 6144 + 5927 6131 144220 53 18 18 81 5 0 21 0 3 28 chain 25214 chr12 133851895 + 79173535 79173844 AluSp 311 - 5 311 103665 12 2 0 91 1 0 203 chain 5957 chr12 133851895 + 79176612 79176692 MADE1 96 + 0 96 185618 29 0 16 51 chain 39639 chr12 133851895 + 79192606 79193058 L1PA4 6152 - 0 456 69838 6 0 5 157 2 1 287 chain 35462 chr12 133851895 + 79234414 79234833 LTR7 482 - 38 482 75604 149 1 32 14 1 0 227 5 0 22 chain 14910 chr12 133851895 + 79284140 79284313 L1PA5 6144 + 5955 6128 141602 173 chain 23504 chr12 133851895 + 79295677 79295972 L1PA7 6471 + 6171 6465 113109 149 6 5 140 chain 18631 chr12 133851895 + 79311184 79311397 L1PA5 6144 + 5927 6140 131133 213 chain 12944 chr12 133851895 + 79336538 79336688 HERV9-int 5642 + 204 357 148453 90 0 3 60 chain 8542 chr12 133851895 + 79362807 79363096 MER2 342 + 29 342 168052 19 66 85 69 0 5 8 81 0 7 0 81 39 chain 73703 chr12 133851895 + 79408197 79409001 L1PA3long 6157 + 5351 6157 46671 31 1 2 186 0 1 586 chain 39598 chr12 133851895 + 79411838 79412283 L1PA4 6152 + 5705 6152 69890 291 1 2 45 1 2 107 chain 550352 chr12 133851895 + 79433401 79439425 L1PA2 6032 - 0 6030 1400 4918 1 0 410 0 7 519 1 0 140 4 5 31 chain 43306 chr12 133851895 + 79445564 79446037 L1PA4 6152 - 1257 1730 64268 473 chain 113007 chr12 133851895 + 79446037 79447297 L1PA4 6152 + 4891 6151 33373 1260 chain 15703 chr12 133851895 + 79451485 79451684 MER107 203 + 0 201 139255 159 4 6 36 chain 23391 chr12 133851895 + 79452727 79453089 THE1B 368 - 0 368 113694 117 25 23 14 0 4 10 21 26 5 3 0 58 0 2 109 chain 8029 chr12 133851895 + 79454390 79454491 L1MB3 1562 - 256 361 170882 43 0 4 58 chain 6278 chr12 133851895 + 79478923 79479048 Tigger4 2445 - 135 257 182958 25 2 1 14 3 2 39 15 14 27 chain 15110 chr12 133851895 + 79495027 79495229 L1MB3 1562 + 1211 1412 141005 140 1 0 61 chain 8768 chr12 133851895 + 79522463 79522567 L1PA7 6471 + 6365 6469 166825 104 chain 6834 chr12 133851895 + 79524534 79524632 LTR40b 463 + 339 431 178703 6 6 0 86 chain 10612 chr12 133851895 + 79524924 79525041 L1PA7 6471 - 10 127 157765 117 chain 22623 chr12 133851895 + 79528884 79529126 L1PA4 6152 - 0 242 117472 242 chain 28448 chr12 133851895 + 79539517 79539836 AluYa5 310 - 8 310 91383 15 17 0 287 chain 25168 chr12 133851895 + 79564859 79565234 L1PA13 3608 - 126 487 103917 5 1 0 11 6 5 13 2 0 7 2 0 22 0 1 22 11 7 56 1 0 60 2 0 113 1 0 31 1 0 8 chain 97253 chr12 133851895 + 79570829 79571871 L1HS 6032 - 4 1047 37495 855 0 1 187 chain 27001 chr12 133851895 + 79604062 79604576 L1PB1 5432 - 19 515 96279 9 1 0 13 1 0 21 1 0 20 28 23 15 19 10 18 7 6 41 1 0 16 2 1 45 8 6 10 15 10 15 1 0 20 15 13 163 0 12 9 chain 33557 chr12 133851895 + 79605858 79606276 L1PA8 5853 + 5411 5853 78310 153 1 0 45 2 0 70 11 10 54 1 0 5 0 29 76 chain 30091 chr12 133851895 + 79642865 79643183 AluYb8 318 - 0 318 84526 318 chain 26567 chr12 133851895 + 79651248 79651560 AluYb8 318 - 0 312 97778 312 chain 5164 chr12 133851895 + 79675723 79675793 MLT1D 503 - 162 233 193411 42 1 2 27 chain 121809 chr12 133851895 + 79703633 79704974 L1PA3long 6157 - 836 2179 30440 650 0 2 533 0 1 152 1 0 5 chain 77734 chr12 133851895 + 79704974 79705808 L1PA3long 6157 + 5323 6157 44234 834 chain 175303 chr12 133851895 + 79732455 79734469 L1PA6 6164 - 2 2019 21419 168 0 2 389 1 0 288 1 2 364 1 0 250 0 1 369 0 1 26 0 2 150 2 0 5 chain 3494 chr12 133851895 + 79742117 79742156 MER81 114 - 22 61 215443 39 chain 99576 chr12 133851895 + 79761690 79762777 L1PA3long 6157 - 4 1098 36887 134 0 7 953 chain 46209 chr12 133851895 + 79769914 79770467 MER41A 554 - 0 554 61841 364 4 5 185 chain 19342 chr12 133851895 + 79780133 79780361 L1PA7 6471 - 1 230 129103 162 0 1 66 chain 87424 chr12 133851895 + 79786588 79787623 L1PA6 6164 - 2 1039 40592 9 1 0 835 0 3 190 chain 3278 chr12 133851895 + 79805135 79805198 MLT1J 494 - 370 431 219401 31 16 14 16 chain 21116 chr12 133851895 + 79825995 79826261 L1PA6 6164 - 2 265 123506 6 2 0 152 5 4 101 chain 415070 chr12 133851895 + 79883954 79893417 HERVL-int 5654 - 100 5327 9666 76 0 1 252 38 0 7 0 2 39 0 1 92 151 0 241 5 6 210 4 2 405 0 1 136 5 6 466 1 0 13 8 7 23 1 0 71 0 19 655 0 3 100 0 21 4 0 1 44 0 2 17 1 0 291 3787 0 79 314 0 349 0 1 52 1 0 12 0 1 234 0 3 430 0 6 518 7 0 118 0 1 55 0 3 151 chain 299844 chr12 133851895 + 79887330 79891092 L1PA7 6471 - 1 6471 13436 89 5 0 557 0 1 51 14 7 159 0 4 281 4 24 347 0 1 27 0 193 57 0 2 396 0 1 352 0 1 304 4 5 113 1 0 512 0 8 47 102 2579 79 0 3 78 0 1 112 1 9 70 chain 28922 chr12 133851895 + 79893417 79893790 MLT2A1 477 - 99 477 89365 39 0 1 4 5 2 114 5 15 33 4 1 169 chain 57535 chr12 133851895 + 79901200 79901920 L1P3 4156 - 17 735 54217 24 2 1 9 2 0 105 2 0 333 0 1 47 1 2 115 0 1 80 chain 25093 chr12 133851895 + 79901920 79902242 L1P1 4361 + 2746 3092 104333 228 0 24 94 chain 23933 chr12 133851895 + 79906807 79907091 AluSc 308 - 12 300 110725 18 0 4 266 chain 3921 chr12 133851895 + 79929749 79929816 MER63A 208 + 84 151 208542 4 0 1 38 9 8 16 chain 40655 chr12 133851895 + 79933627 79934078 LTR7 482 + 0 482 68362 264 0 31 187 chain 292096 chr12 133851895 + 79934080 79937674 HERVH-int 3825 + 0 3816 13892 212 0 11 309 5 0 38 1 0 10 1 0 24 4 55 38 1 0 12 69 4 16 2 1 49 1 0 247 0 3 194 15 0 218 0 1 50 0 8 181 8 35 586 1 0 282 1 0 4 0 1 481 9 11 39 8 218 478 chain 41723 chr12 133851895 + 79938954 79939405 LTR7 482 + 0 482 66996 264 0 31 187 chain 18551 chr12 133851895 + 79947340 79947620 LTR12C 1709 - 510 796 131355 43 41 47 196 chain 2982 chr12 133851895 + 79956188 79956223 LTR12C 1709 + 683 718 225431 35 chain 8293 chr12 133851895 + 79959204 79959454 LTR12C 1709 + 773 1031 169446 56 0 81 16 0 37 41 43 6 11 73 0 10 chain 95169 chr12 133851895 + 79967516 79968841 LTR12C 1709 + 1 1709 38047 290 0 9 38 0 43 26 1 0 57 11 7 203 0 43 9 0 1 4 2 1 11 0 237 50 0 88 97 44 13 378 35 34 69 chain 19778 chr12 133851895 + 80002021 80002317 MER1B 344 - 6 303 127879 57 2 0 5 10 12 58 1 0 52 2 0 62 7 11 40 chain 24144 chr12 133851895 + 80016088 80016387 L1PA5 6144 - 3 298 109503 6 4 0 289 chain 100573 chr12 133851895 + 80020372 80021479 L1PA4 6152 - 1 1109 36609 149 0 1 958 chain 72134 chr12 133851895 + 80021480 80022284 L1P1 4361 + 2373 3175 47414 208 0 1 372 3 0 221 chain 87126 chr12 133851895 + 80067564 80068872 L1PA15 4387 + 2901 4193 40727 52 0 1 215 1 0 21 1 0 75 0 2 82 2 1 47 5 7 91 20 14 14 0 1 65 18 19 192 43 36 54 5 4 19 1 0 20 2 1 170 1 0 26 1 0 6 4 3 46 1 0 8 chain 40594 chr12 133851895 + 80093770 80094306 MLT2A2 560 - 0 558 68451 142 1 12 132 0 1 71 1 5 25 1 7 163 chain 15894 chr12 133851895 + 80113143 80113386 MER30 238 + 0 238 138674 98 0 2 6 4 23 45 26 0 64 chain 24722 chr12 133851895 + 80115496 80115780 AluSp 311 + 10 294 106310 284 chain 5065 chr12 133851895 + 80143085 80143149 MSTC 436 + 371 436 194483 41 0 1 23 chain 114962 chr12 133851895 + 80153292 80154619 L1PA5 6144 - 7 1337 32805 141 3 0 5 0 2 183 0 1 108 11 13 561 0 1 315 chain 4379 chr12 133851895 + 80158617 80158809 L2a 937 + 130 344 202199 26 121 143 45 chain 19577 chr12 133851895 + 80181294 80181579 AluSp 311 - 16 300 128439 17 7 5 4 0 1 126 8 7 76 11 12 36 chain 44436 chr12 133851895 + 80250842 80251346 L1PA3long 6157 + 5627 6142 63653 426 11 0 9 0 22 58 chain 469549 chr12 133851895 + 80255124 80261249 L1PA7 6471 + 5 6460 8050 193 1 0 95 160 365 43 0 10 10 62 148 177 1 22 142 0 4 391 0 1 473 3 4 557 20 0 844 4 2 17 1 0 6 0 13 48 0 8 230 1 5 849 0 1 389 1 0 159 2 1 133 1 0 254 0 4 17 2 1 419 6 5 111 0 1 150 0 1 70 0 13 7 13 0 54 1 0 8 chain 26024 chr12 133851895 + 80261432 80261766 THE1C 375 + 0 335 99927 124 3 0 53 0 1 23 0 3 131 chain 27333 chr12 133851895 + 80272299 80272673 THE1C 375 - 0 371 95162 26 1 0 43 0 4 115 3 4 58 3 0 25 4 0 96 chain 30477 chr12 133851895 + 80316205 80316631 L1PA8 5853 + 5427 5853 83476 77 0 5 55 1 0 45 2 0 55 0 2 12 2 1 14 4 3 44 2 1 106 1 0 6 chain 103261 chr12 133851895 + 80336511 80338029 L1PA6 6164 - 2 1216 35936 18 1 0 294 0 15 304 0 1 26 323 0 188 0 4 364 chain 5507 chr12 133851895 + 80349205 80349274 L1M3a 1038 - 299 368 189965 69 chain 16045 chr12 133851895 + 80361297 80361487 L1PA8 5853 - 1115 1306 137486 115 1 2 74 chain 88822 chr12 133851895 + 80361487 80362596 L1PA8 5853 + 4746 5849 40075 263 2 0 75 2 3 33 0 1 399 0 1 43 1 0 46 2 0 68 2 1 8 2 1 52 2 1 19 1 0 89 chain 47061 chr12 133851895 + 80384214 80384871 MER51A 677 + 0 650 61153 141 1 0 29 31 22 110 0 1 23 8 17 196 0 1 43 8 0 67 chain 7887 chr12 133851895 + 80386466 80386913 LTR12C 1709 - 269 570 171759 44 333 187 70 chain 117622 chr12 133851895 + 80396125 80398378 THE1D-int 1627 - 0 1627 31919 58 698 51 132 2 1 267 0 5 26 5 11 390 1 0 331 0 2 6 1 0 57 2 4 104 4 10 151 6 9 12 chain 7739 chr12 133851895 + 80415207 80415582 L1MA9 1812 - 76 398 172660 13 8 0 18 1 0 28 94 61 33 136 126 36 1 0 7 chain 3781 chr12 133851895 + 80462489 80462534 U7 62 - 14 59 210648 45 chain 101612 chr12 133851895 + 80465927 80468440 L1PA7 6471 - 1 2539 6288 12 4 7 566 1 13 181 26 30 44 0 3 116 0 1 4 6 4 251 0 1 802 0 1 176 0 1 287 7 8 30 chain 552111 chr12 133851895 + 80468452 80474606 L1PA3long 6157 - 0 6157 1178 7 5 0 762 0 2 1252 0 1 1443 1 0 553 0 1 97 0 1 799 0 1 45 0 3 890 1 0 183 0 1 116 chain 157290 chr12 133851895 + 80474612 80478502 L1PA7 6471 - 2539 6468 6288 172 3 6 63 0 1 101 0 1 126 0 3 566 0 4 16 7 17 208 11 12 127 4 6 65 5 10 1779 1 0 222 7 8 11 1 2 162 1 2 61 8 14 57 0 1 106 chain 484213 chr12 133851895 + 80503713 80510286 L1PA7 6471 - 6 6468 7581 6 2 0 100 325 0 102 7 8 441 6 9 114 8 0 60 1 6 125 0 5 529 0 1 380 0 1 4 1 0 44 1 2 50 0 3 469 11 0 278 0 1 147 0 4 68 1 0 5 1 0 12 0 1 390 0 4 8 1 118 16 6 7 54 0 4 16 7 17 91 2 0 54 0 3 42 0 2 38 5 6 141 0 1 369 2 0 5 6 9 66 5 4 155 2 1 277 0 12 63 14 22 95 0 3 287 17 8 11 13 72 13 1 0 4 0 1 144 7 6 73 2 0 255 23 24 82 10 11 218 34 28 6 0 6 145 chain 540842 chr12 133851895 + 80516820 80522966 L1PA4 6152 - 0 6150 2685 6 0 5 139 0 1 364 4 0 510 0 1 997 0 1 842 7 6 940 1 0 597 0 1 31 0 1 1708 chain 535698 chr12 133851895 + 80537843 80543852 L1PA3long 6157 - 5 6151 3490 187 0 1 1082 1 0 629 0 1 1010 6 10 1048 0 2 1278 8 136 55 14 0 461 0 15 84 0 1 146 chain 66731 chr12 133851895 + 80550625 80551565 L1MA2 4263 - 251 1197 49763 51 5 3 149 3 0 80 6 7 59 1 0 78 4 1 18 3 1 6 1 0 92 0 16 173 19 20 88 3 4 4 1 0 96 chain 72127 chr12 133851895 + 80552369 80553297 L1PB1 5432 - 1713 2642 47419 506 0 1 138 1 0 59 2 1 7 0 1 102 1 2 11 0 1 57 1 0 43 chain 118923 chr12 133851895 + 80553305 80555003 L1PB1 5432 + 3741 5423 31447 221 0 1 231 6 9 228 0 1 18 1 7 164 0 1 52 0 5 128 2 1 295 1 2 8 2 1 18 16 14 11 19 13 50 18 16 41 4 3 16 1 0 4 19 8 19 7 4 15 2 0 24 1 0 21 1 0 13 2 1 9 1 0 9 chain 54730 chr12 133851895 + 80567539 80568293 MER41-int 2638 - 18 753 55882 167 0 1 152 0 1 151 1 0 42 13 11 16 0 2 105 17 0 61 4 1 25 chain 10032 chr12 133851895 + 80568303 80568433 MER41-int 2638 + 466 599 160417 24 0 4 91 1 0 14 chain 24340 chr12 133851895 + 80582045 80582327 AluSg 306 + 8 290 108417 282 chain 29134 chr12 133851895 + 80584285 80584594 AluYk12 309 + 0 309 88391 309 chain 3220 chr12 133851895 + 80596518 80596552 MLT2D 439 - 2 36 220577 34 chain 11016 chr12 133851895 + 80610620 80610737 L1PA4 6152 + 6034 6151 156140 117 chain 117156 chr12 133851895 + 80616791 80618561 L1PB1 5432 - 106 1821 32070 18 24 13 15 6 5 39 1 0 15 2 1 36 34 28 12 3 2 4 1 0 23 19 0 9 36 8 96 1 0 295 0 2 77 3 0 240 3 4 26 15 16 202 17 27 117 0 3 261 4 5 116 chain 556204 chr12 133851895 + 80637949 80643964 L1PA2 6032 - 0 6025 700 495 0 4 320 0 6 5200 chain 32497 chr12 133851895 + 80653165 80653601 L1PA8 5853 - 7 454 80028 86 1 0 19 2 1 52 1 0 9 2 1 70 2 0 44 1 0 63 0 18 84 chain 21791 chr12 133851895 + 80661187 80661449 L1PA5 6144 - 4 259 121055 72 2 0 42 6 1 140 chain 4038 chr12 133851895 + 80664326 80664373 MER5A1 166 - 37 84 206812 47 chain 455175 chr12 133851895 + 80677653 80683510 L1PA8 5853 - 0 5803 8572 92 2 1 15 10 9 37 2 1 10 1 0 5 6 5 68 2 0 47 1 0 554 15 13 72 0 1 56 0 1 650 2 1 55 0 3 99 0 4 183 0 1 300 2 1 498 1 2 72 2 0 15 21 7 40 1 5 214 15 3 608 9 10 77 1 0 683 0 1 175 0 4 235 4 0 179 15 16 75 0 6 309 26 30 90 0 1 106 59 20 6 1 0 11 2 0 21 chain 175453 chr12 133851895 + 80700600 80702792 SVA_D 2077 - 13 2071 21400 137 1 0 489 1 0 37 4 0 8 74 0 309 4 0 30 0 1 15 0 2 11 78 0 70 22 11 28 2 0 7 2 0 148 3 0 34 0 3 74 0 40 604 chain 4165 chr12 133851895 + 80701277 80701351 SVA_D 2077 - 913 1036 119948 59 3 52 12 chain 3510 chr12 133851895 + 80701720 80701798 SVA_D 2077 - 747 825 130008 78 chain 9815 chr12 133851895 + 80715242 80715357 L1PA4 6152 + 6028 6143 161518 115 chain 5165 chr12 133851895 + 80726035 80726094 MLT1D 503 + 441 500 193398 59 chain 109656 chr12 133851895 + 80740949 80742303 L1PA7 6471 - 29 1402 34288 67 8 0 70 8 13 140 0 1 140 1 20 183 0 3 86 9 8 90 1 0 229 0 2 66 1 0 42 0 1 4 1 0 208 chain 486938 chr12 133851895 + 80780156 80785715 L1PA5 6144 + 0 6128 7486 89 0 525 80 0 7 666 0 1 476 0 1 178 0 1 290 0 1 184 0 2 157 0 5 568 0 22 359 0 4 312 3 4 726 1 0 1470 chain 13214 chr12 133851895 + 80824290 80824436 L1PA5 6144 + 5998 6144 147411 146 chain 549420 chr12 133851895 + 80842163 80848300 L1PA3long 6157 - 7 6157 1527 1640 1 2 18 2 0 1612 1 2 185 0 1 105 0 13 475 1 0 2097 chain 539189 chr12 133851895 + 80855730 80861796 L1PA3long 6157 + 75 6157 2952 26 1 2 31 19 26 6 7 0 1933 1 0 480 0 13 104 0 1 179 1 2 2427 1 2 850 chain 25077 chr12 133851895 + 80865253 80865520 AluYa5 310 - 8 275 104427 267 chain 541066 chr12 133851895 + 80871304 80877310 L1PA3long 6157 + 6 6152 2658 113 0 4 28 1 2 78 2 0 545 0 128 262 0 4 1271 1 5 2274 0 1 1431 chain 27800 chr12 133851895 + 80877374 80877704 L1PA7 6471 - 10 340 93692 330 chain 95740 chr12 133851895 + 80911630 80912977 L1MA2 4263 - 214 1559 37885 83 1 0 9 2 1 141 9 6 147 1 0 76 17 14 6 1 0 245 3 11 333 0 1 24 1 2 39 1 3 26 0 8 6 8 0 39 5 0 35 0 1 89 chain 349752 chr12 133851895 + 80914151 80918072 L1PA4 6152 - 11 3932 11614 858 1 0 758 0 1 1347 1 0 622 0 1 334 chain 3977 chr12 133851895 + 80946226 80946271 MADE1 96 - 1 46 207728 45 chain 10112 chr12 133851895 + 80957871 80957993 L1PA2 6032 - 4 123 160032 11 3 0 108 chain 19409 chr12 133851895 + 80962943 80963155 L1PA3long 6157 - 201 414 128925 172 0 1 40 chain 15747 chr12 133851895 + 80963155 80963327 L1PA3long 6157 + 5984 6156 139120 172 chain 127785 chr12 133851895 + 80963373 80964944 L1PA7 6471 - 1 1581 28620 12 1 6 143 0 1 71 11 15 473 0 1 126 2 0 249 4 3 267 0 1 109 0 2 36 1 0 37 4 3 25 chain 22851 chr12 133851895 + 80971859 80972109 L1PA4 6152 - 9 259 116333 250 chain 42223 chr12 133851895 + 80979511 80979975 L1PA2 6032 - 0 463 66371 262 1 0 201 chain 36468 chr12 133851895 + 80979975 80980363 L1PA2 6032 + 5169 5557 74280 388 chain 22560 chr12 133851895 + 80989346 80989598 L1PA3long 6157 - 0 252 117764 252 chain 30552 chr12 133851895 + 81058719 81059129 MLT2A2 560 - 6 560 83338 141 0 11 63 4 12 82 2 127 118 chain 4018 chr12 133851895 + 81132812 81132858 LTR16A2 485 - 108 154 207106 46 chain 24604 chr12 133851895 + 81132995 81133350 Tigger2 2703 - 80 419 106977 10 0 1 178 1 0 49 3 0 10 0 5 37 24 6 43 chain 13007 chr12 133851895 + 81148712 81148865 MER75B 242 - 35 188 148219 153 chain 3135 chr12 133851895 + 81166002 81166040 L1MA4A 3247 - 164 202 222269 38 chain 25018 chr12 133851895 + 81171076 81171376 THE1B 368 + 0 300 104692 172 1 0 98 0 1 29 chain 5385 chr12 133851895 + 81171496 81171559 MER54A 897 + 588 651 191139 63 chain 30280 chr12 133851895 + 81176030 81176528 MLT2A1 477 + 0 473 83997 34 0 17 117 5 2 20 36 0 107 1 0 86 53 51 39 chain 28484 chr12 133851895 + 81176901 81177304 LTR7 482 - 0 482 91243 155 1 12 35 0 29 26 0 1 109 23 61 54 chain 295805 chr12 133851895 + 81178555 81182264 HERVH-int 3825 - 0 3825 13654 225 0 2 268 0 210 39 9 11 772 0 1 166 0 1 120 0 4 115 0 1 174 4 31 459 15 0 447 1 0 49 2 1 5 0 1 8 109 0 16 2 1 12 40 0 30 0 37 15 7 1 14 14 9 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 110 0 11 212 chain 28637 chr12 133851895 + 81182266 81182671 LTR7 482 - 0 482 90567 132 1 0 26 19 60 10 2 0 29 0 1 109 8 46 69 chain 61307 chr12 133851895 + 81183480 81184228 LTR17 781 + 1 772 52204 118 0 9 151 0 2 18 10 0 28 0 1 64 1 0 324 0 22 34 chain 10879 chr12 133851895 + 81198668 81198830 L1MA2 4263 - 205 447 156666 93 2 1 6 1 0 15 6 88 39 chain 16199 chr12 133851895 + 81199474 81199707 THE1A 353 + 0 233 137758 62 1 3 40 6 5 92 1 0 31 chain 71784 chr12 133851895 + 81217867 81218891 L1PB 1623 + 117 1145 47570 47 0 2 21 7 4 78 2 1 127 11 9 5 3 0 72 6 5 18 7 11 324 0 1 65 0 3 6 8 5 126 4 10 80 0 1 7 chain 22501 chr12 133851895 + 81220895 81221159 AluY 311 + 11 276 118022 121 0 1 143 chain 4675 chr12 133851895 + 81272470 81272695 LTR12 884 - 676 777 198807 27 88 18 24 53 0 24 1 0 8 chain 3896 chr12 133851895 + 81273368 81273423 MER66D 528 + 346 400 208918 10 2 1 43 chain 28520 chr12 133851895 + 81276066 81276362 AluYa5 310 - 14 310 91098 296 chain 3246 chr12 133851895 + 81313579 81313655 L1MCc 1008 + 35 103 220082 12 6 3 10 14 9 34 chain 4299 chr12 133851895 + 81315455 81315505 MLT1A 405 - 335 385 203222 50 chain 22054 chr12 133851895 + 81320452 81320731 AluY 311 + 26 307 120002 102 1 2 68 0 1 108 chain 97409 chr12 133851895 + 81321490 81322651 L1PA6 6164 - 3 1176 37452 7 3 0 135 0 1 11 1 0 4 0 1 499 0 3 90 2 10 107 0 5 164 1 0 81 1 0 55 chain 4201 chr12 133851895 + 81322869 81322949 MADE1 96 - 0 96 204526 24 19 35 37 chain 24369 chr12 133851895 + 81336325 81336620 AluSp 311 + 4 299 108266 295 chain 21106 chr12 133851895 + 81339871 81340133 AluSc5 308 + 15 274 123534 242 4 1 16 chain 19523 chr12 133851895 + 81347575 81347794 L1PA4 6152 + 5932 6151 128585 219 chain 23657 chr12 133851895 + 81390548 81390833 L1PA5 6144 - 0 291 112270 21 0 6 264 chain 60886 chr12 133851895 + 81396004 81396670 L1PA3long 6157 - 0 666 52393 666 chain 168343 chr12 133851895 + 81396670 81398533 L1PA3long 6157 + 3610 5473 22245 336 0 1 589 0 1 466 1 0 288 1 0 182 chain 186264 chr12 133851895 + 81441653 81443722 L1PA4 6152 - 6 2085 20397 1257 1 2 438 0 3 88 0 4 66 0 2 219 chain 29013 chr12 133851895 + 81444155 81444463 AluYb9 318 - 0 318 88928 144 0 10 164 chain 487208 chr12 133851895 + 81450124 81456164 L1PA6 6164 - 2 6164 7471 9 0 2 643 0 2 329 0 1 41 0 3 960 11 7 461 2 1 83 1 0 73 0 5 6 10 5 80 0 95 88 1 5 43 1 0 6 0 1 21 0 2 349 2 1 474 0 1 31 0 1 114 10 6 249 0 1 724 11 12 39 21 30 200 5 30 418 2 1 305 0 1 69 14 0 134 chain 363197 chr12 133851895 + 81460337 81464500 L1PA5 6144 + 1961 6130 11285 1201 9 8 114 0 1 11 1 0 386 1 0 1589 0 4 22 0 4 829 chain 40304 chr12 133851895 + 81490262 81490741 L1PA7 6471 - 10 493 68873 72 0 1 192 0 1 210 0 2 5 chain 3171 chr12 133851895 + 81490786 81490909 MER3 215 + 69 192 221533 28 57 63 14 6 0 18 chain 27698 chr12 133851895 + 81500006 81500384 MER1A 529 + 155 529 94051 297 24 21 5 1 0 51 chain 83014 chr12 133851895 + 81512758 81513806 MER11A 1151 - 0 1151 42331 27 0 3 35 2 1 166 1 2 55 3 0 56 2 1 335 9 16 55 0 1 9 0 1 94 4 0 116 0 99 79 chain 26796 chr12 133851895 + 81518713 81519021 AluY 311 + 2 311 96990 130 0 1 178 chain 260731 chr12 133851895 + 81523409 81526437 L1PA6 6164 - 2 3031 15655 140 1 0 4 1 2 701 1 0 636 0 1 447 0 1 700 1 0 340 0 1 56 chain 90300 chr12 133851895 + 81571258 81572253 L1PA3long 6157 + 5162 6157 39536 995 chain 23055 chr12 133851895 + 81573292 81573576 AluYc3 301 + 13 290 115379 100 1 2 120 8 0 55 chain 10426 chr12 133851895 + 81610018 81610137 L1PA3long 6157 + 5936 6055 158579 119 chain 3053 chr12 133851895 + 81610149 81610183 MADE1 96 - 50 84 223943 34 chain 115868 chr12 133851895 + 81634625 81635925 L1PA3long 6157 - 8 1308 32340 165 1 2 1106 1 0 27 chain 144067 chr12 133851895 + 81635925 81637514 L1PA3long 6157 + 3282 4871 25467 1589 chain 29267 chr12 133851895 + 81661907 81662215 AluYa5 310 - 1 309 87705 308 chain 3851 chr12 133851895 + 81663771 81663840 L1PB1 5432 + 5358 5422 209637 11 3 0 21 2 1 13 1 0 18 chain 6217 chr12 133851895 + 81736657 81736725 L1PA3long 6157 + 6074 6142 183439 68 chain 20480 chr12 133851895 + 81788304 81788590 L1PA8 5853 + 5564 5847 125685 45 2 0 69 2 1 9 1 2 5 2 0 45 2 1 86 0 2 18 chain 3279 chr12 133851895 + 81790637 81790674 L2a 937 - 600 637 219371 37 chain 14608 chr12 133851895 + 81816359 81816572 THE1B 368 - 136 368 142556 42 20 24 111 0 15 40 chain 108480 chr12 133851895 + 81843419 81844656 L1PA5 6144 - 0 1239 34568 155 1 0 639 0 2 54 1 0 219 6 8 162 chain 22599 chr12 133851895 + 81846777 81847016 L1PA2 6032 - 4 243 117590 239 chain 276329 chr12 133851895 + 81871246 81874619 L1PA7 6471 - 2065 5439 14853 404 12 6 388 2 0 111 1 0 10 0 2 11 0 1 98 12 5 735 1 0 4 8 1 154 0 2 289 0 1 51 0 18 187 1 0 154 16 15 408 0 2 223 0 1 93 chain 163768 chr12 133851895 + 81874619 81876659 L1PA7 6471 + 4409 6450 22829 163 3 2 572 4 6 62 15 14 389 1 4 460 0 1 215 18 19 40 13 9 85 chain 103370 chr12 133851895 + 81887746 81888882 L1PA3long 6157 + 5018 6157 35905 58 0 2 980 0 1 98 chain 16248 chr12 133851895 + 81897979 81898179 L1PA7 6471 + 5514 5713 137618 189 1 0 10 chain 57488 chr12 133851895 + 81898180 81898837 L1PA7 6471 + 5717 6374 54247 657 chain 7354 chr12 133851895 + 81898966 81899048 L1PA8 5853 + 5771 5853 175063 82 chain 6366 chr12 133851895 + 81900518 81900685 MER58A 224 - 17 187 182280 38 79 82 50 chain 24970 chr12 133851895 + 81902396 81902672 L1PA3long 6157 - 1 277 104960 276 chain 19019 chr12 133851895 + 81902672 81902881 L1PA3long 6157 + 5687 5896 130069 209 chain 42008 chr12 133851895 + 81906690 81907294 L1PB2 3958 + 3231 3816 66611 76 2 0 54 1 0 14 5 0 64 2 0 12 2 0 89 2 0 77 1 0 64 1 0 62 15 13 19 1 0 41 chain 13461 chr12 133851895 + 81911716 81911872 L1PA5 6144 + 5974 6137 146481 25 0 7 131 chain 18380 chr12 133851895 + 81915343 81915615 AluY 311 + 29 299 131844 68 4 13 8 0 1 14 23 11 155 chain 71347 chr12 133851895 + 81958252 81959087 HERVL-int 5654 + 36 869 47771 392 4 2 439 chain 15217 chr12 133851895 + 81959087 81959259 MLT2A1 477 + 207 383 140727 164 0 4 8 chain 29459 chr12 133851895 + 82032456 82032765 AluYa5 310 - 1 310 86800 309 chain 527856 chr12 133851895 + 82052867 82058974 L1PA4 6152 + 10 6150 4417 140 15 16 135 0 9 219 1 0 320 8 14 15 0 1 5 9 10 146 1 0 144 0 1 944 2 1 1034 2 1 524 1 0 348 4 18 382 0 1 955 0 3 642 0 1 111 chain 18776 chr12 133851895 + 82059504 82059707 L1PA4 6152 + 5101 5304 130753 203 chain 75007 chr12 133851895 + 82059707 82060542 L1PA4 6152 + 5308 6143 46013 835 chain 13575 chr12 133851895 + 82077509 82077901 MSTB1 431 - 8 431 146070 43 9 2 10 3 1 12 112 147 103 3 4 19 29 31 35 3 5 11 chain 8574 chr12 133851895 + 82100385 82100483 L1HS 6032 - 5253 5351 166921 98 chain 134420 chr12 133851895 + 82100483 82101961 L1PA3long 6157 + 4672 6157 27129 52 0 7 1426 chain 16444 chr12 133851895 + 82135302 82135530 MER30 238 + 0 238 137084 107 5 16 69 4 3 43 chain 13037 chr12 133851895 + 82156226 82156383 HERVL-int 5654 - 5496 5654 148096 4 0 1 153 chain 29735 chr12 133851895 + 82161523 82161916 MLT2A1 477 + 0 385 85714 76 1 0 3 6 0 90 4 1 65 0 1 74 0 1 74 chain 2694 chr12 133851895 + 82178541 82178585 MER101 471 - 175 243 230283 26 4 28 14 chain 5595 chr12 133851895 + 82191781 82191890 MER3 215 + 64 194 189130 17 3 9 34 6 0 6 5 26 38 chain 3416 chr12 133851895 + 82193540 82193583 MIR 256 - 15 60 216822 31 0 2 12 chain 258200 chr12 133851895 + 82207599 82211448 L1PA11 4918 + 886 4464 15800 79 0 1 439 6 5 9 1 4 383 30 27 364 26 0 39 1 2 5 4 0 12 0 1 5 0 4 273 1 2 190 8 13 207 8 7 80 24 38 127 293 12 13 5 9 52 6 7 137 0 8 106 0 1 14 0 1 441 0 3 95 6 8 121 0 1 2 2 0 98 3 2 12 0 1 47 2 1 13 2 0 34 1 0 23 chain 10759 chr12 133851895 + 82214770 82214941 L1PB4 2604 + 2379 2552 157159 108 17 20 9 2 1 35 chain 7961 chr12 133851895 + 82215853 82215989 MER2 342 - 24 160 171272 19 24 25 20 1 0 72 chain 5381 chr12 133851895 + 82221443 82221533 MER67D 511 + 420 509 191193 34 2 0 33 7 8 14 chain 26892 chr12 133851895 + 82222699 82223032 MER41A 554 - 109 553 96660 47 0 1 102 0 110 184 chain 6111 chr12 133851895 + 82223044 82223131 MER41-int 2638 - 2 85 184340 22 0 1 53 5 0 7 chain 29117 chr12 133851895 + 82238859 82239312 L1PA16 3655 - 62 510 88476 16 3 0 223 38 39 14 18 16 81 1 0 59 chain 43384 chr12 133851895 + 82252167 82252691 L1PA8A 6298 + 5768 6290 64952 214 1 0 202 1 0 106 chain 342336 chr12 133851895 + 82284479 82288872 HERVL-int 5654 + 0 4432 11821 745 5 3 361 10 9 81 0 6 176 1 2 50 0 1 68 2 5 215 14 15 461 11 12 103 0 4 197 5 4 326 1 4 6 0 1 37 1 3 4 1 0 173 0 3 68 9 18 803 0 2 22 0 6 87 1 2 349 chain 11577 chr12 133851895 + 82290031 82290173 L1PA7 6471 - 1 143 153994 142 chain 35971 chr12 133851895 + 82290174 82290704 LTR12F 595 + 0 562 74929 93 0 37 15 2 0 32 39 38 124 4 0 9 2 0 170 14 18 26 chain 452269 chr12 133851895 + 82290767 82296455 HERV9-int 5642 + 11 5642 8687 63 0 1 142 0 7 15 15 11 43 0 1 306 6 7 93 43 16 50 0 2 78 2 0 24 0 1 17 0 1 4 1 0 9 8 0 20 0 3 31 9 10 139 25 15 278 0 1 24 4 0 1407 0 1 184 16 17 645 0 1 192 6 1 543 3 5 197 0 8 103 0 2 358 0 1 33 4 8 101 1 0 11 1 2 210 9 7 37 3 1 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 39266 chr12 133851895 + 82298973 82299467 LTR12F 595 + 0 595 70375 103 11 112 380 chain 22314 chr12 133851895 + 82299467 82299848 L1PA7 6471 - 140 459 118852 90 1 0 147 114 53 29 chain 27180 chr12 133851895 + 82300969 82301371 MLT2A1 477 - 83 477 95663 9 4 0 113 3 0 67 1 2 23 0 1 9 4 1 51 11 9 90 0 2 17 chain 32794 chr12 133851895 + 82302156 82302640 L1PA7 6471 - 5 481 79543 9 5 0 125 65 61 133 1 2 146 chain 71365 chr12 133851895 + 82302647 82303513 L1PA7 6471 + 5124 5998 47760 581 1 2 5 0 3 42 6 10 231 chain 99560 chr12 133851895 + 82305169 82306267 L1PA3long 6157 - 0 1096 36893 555 2 0 541 chain 24963 chr12 133851895 + 82319519 82319802 L1PA5 6144 - 4 287 104991 283 chain 16319 chr12 133851895 + 82319802 82319978 L1PA5 6144 + 5692 5868 137439 176 chain 5748 chr12 133851895 + 82327051 82327119 L1MC2 1988 - 777 845 187650 68 chain 23949 chr12 133851895 + 82327623 82327986 MLT2A1 477 - 95 477 110631 27 21 38 86 8 12 36 18 16 167 chain 432930 chr12 133851895 + 82327987 82335810 HERVL-int 5654 - 1 5654 9239 23 16 18 364 0 1 689 0 1 284 17 16 81 4 1 91 0 2 274 0 1 170 0 1 91 6 14 94 0 1 286 0 3 62 6 30 107 0 1 179 0 1 169 5 6 15 0 1 545 2296 0 223 13 83 159 10 11 204 0 7 147 1 0 79 10 9 63 0 6 377 0 1 557 1 0 105 chain 28203 chr12 133851895 + 82335810 82336255 MLT2A1 477 - 0 477 92299 43 55 89 102 4 5 68 8 5 165 chain 20756 chr12 133851895 + 82340465 82340709 L1PA4 6152 - 0 275 124774 70 0 31 174 chain 3695 chr12 133851895 + 82359256 82359298 L1MB1 2102 + 1965 2007 212003 42 chain 30442 chr12 133851895 + 82361519 82362137 L1PB1 5432 - 10 545 83548 18 1 0 13 4 3 18 1 0 13 13 11 15 1 0 4 2 0 19 40 27 37 8 7 16 2 1 52 2 0 9 2 0 3 2 0 9 1 0 13 1 0 20 75 23 204 chain 60020 chr12 133851895 + 82363758 82364864 L1PB 1623 - 170 960 52813 7 1 0 136 23 7 302 300 0 101 0 5 3 5 0 178 0 1 50 chain 37267 chr12 133851895 + 82367393 82367897 L1PB 1623 + 145 646 73143 26 0 1 15 1 0 4 2 0 78 1 0 110 0 2 15 1 0 87 4 3 160 chain 27775 chr12 133851895 + 82369016 82369388 LTR7 482 - 40 482 93778 178 8 40 109 8 46 69 chain 128171 chr12 133851895 + 82378052 82379507 L1PA5 6144 - 13 1473 28530 594 0 1 235 0 4 47 1 0 520 1 2 57 chain 8084 chr12 133851895 + 82391049 82391153 THE1B 368 - 24 128 170579 104 chain 74251 chr12 133851895 + 82407743 82408573 L1PA5 6144 - 16 846 46386 830 chain 85068 chr12 133851895 + 82442135 82443098 L1PA5 6144 - 2668 3631 41342 963 chain 234959 chr12 133851895 + 82443098 82445765 L1PA5 6144 + 3462 6137 17031 561 0 3 10 0 1 265 0 1 164 4 5 186 1 0 125 0 2 918 0 1 433 chain 249430 chr12 133851895 + 82487850 82491374 L1PBa 3878 - 131 3656 16287 31 2 1 296 10 13 38 1 0 73 16 14 59 3 0 19 0 7 41 58 57 9 3 1 31 0 2 21 2 1 505 3 2 5 0 1 256 9 10 127 0 1 41 0 1 92 5 0 62 3 9 177 9 8 4 0 1 109 7 0 236 0 9 16 5 7 5 1 0 129 0 3 123 0 2 174 0 1 156 17 16 79 1 0 106 2 0 37 1 0 13 0 3 11 2 18 7 15 0 112 11 1 121 2 0 15 chain 112975 chr12 133851895 + 82497331 82499430 L1PB1 5432 + 3808 5401 33385 70 1 0 25 1 8 156 1 0 306 8 7 249 4 0 180 4 0 6 17 0 10 3 18 90 4 0 170 1 2 10 479 0 23 1 0 9 1 0 9 9 5 6 2 0 53 2 1 9 17 16 35 1 0 15 23 12 16 2 10 12 2 0 24 1 0 21 1 0 10 chain 10374 chr12 133851895 + 82505633 82505762 Tigger1 2417 + 1657 1786 158814 129 chain 24683 chr12 133851895 + 82508639 82508927 AluY 311 + 0 288 106529 16 0 1 8 2 0 107 0 1 155 chain 8234 chr12 133851895 + 82514150 82514260 L1P4 1494 + 659 784 169757 53 1 16 56 chain 9393 chr12 133851895 + 82544731 82544845 MER85 139 - 0 124 163596 40 0 10 74 chain 66833 chr12 133851895 + 82562632 82563417 L1PA6 6164 - 8 802 49716 260 0 2 405 0 1 113 0 6 7 chain 87752 chr12 133851895 + 82573362 82574351 L1PA4 6152 - 815 1804 40463 989 chain 70430 chr12 133851895 + 82574351 82575164 L1PA4 6152 + 5335 6152 48154 261 2 0 527 0 1 17 0 5 6 chain 91987 chr12 133851895 + 82617881 82618882 L1PA2 6032 + 5031 6032 38973 1001 chain 92128 chr12 133851895 + 82637807 82639008 L1PA7 6471 - 5 1213 38926 8 3 0 43 12 13 73 9 10 182 1 2 116 0 1 283 0 1 24 1 0 32 0 3 58 0 3 61 5 6 214 6 5 70 chain 52959 chr12 133851895 + 82639016 82639628 L1PA7 6471 + 4555 5187 57040 119 0 4 278 0 16 215 chain 27556 chr12 133851895 + 82641648 82642087 LTR71A 459 - 21 459 94485 20 13 14 17 1 0 24 47 44 117 3 4 45 0 1 152 chain 8551 chr12 133851895 + 82646910 82647015 MER2 342 + 144 249 168008 105 chain 8560 chr12 133851895 + 82658243 82658334 L1PA3long 6157 - 0 91 167965 91 chain 5384 chr12 133851895 + 82658725 82658819 MADE1 96 - 2 96 191144 36 20 20 38 chain 175202 chr12 133851895 + 82666642 82668704 L1PA6 6164 - 2 2065 21435 6 4 0 260 0 1 837 0 1 9 0 1 90 0 1 150 0 2 161 2 0 234 6 7 303 chain 108032 chr12 133851895 + 82697516 82698726 L1PA3long 6157 - 2163 3373 34616 404 0 1 418 2 1 386 chain 194615 chr12 133851895 + 82698726 82700896 L1PA3long 6157 + 3971 6157 19616 340 1 0 1190 0 17 639 chain 326348 chr12 133851895 + 82704272 82708167 L1PA6 6164 - 3 3900 12329 7 3 0 202 0 1 654 0 4 160 0 1 634 0 1 125 0 4 736 1 3 5 1 0 99 5 7 328 4 3 123 5 4 177 0 1 97 29 19 361 0 1 78 0 1 61 chain 9598 chr12 133851895 + 82754700 82755105 LTR12C 1709 - 169 777 162614 42 268 430 50 0 41 45 chain 51864 chr12 133851895 + 82763164 82763825 LTR12 884 - 24 884 57706 95 0 8 29 0 103 61 1 0 186 2 0 16 0 25 10 0 66 261 chain 249225 chr12 133851895 + 82764651 82767757 HERV9-int 5642 - 818 5642 16297 166 22 1817 892 0 2 840 3 0 21 80 0 291 1 0 79 0 4 415 1 0 5 0 1 211 1 2 78 chain 47875 chr12 133851895 + 82767778 82768423 LTR12 884 - 0 882 60572 14 3 0 72 1 2 38 1 9 32 0 106 197 1 12 26 2 0 32 0 25 24 0 91 202 chain 30264 chr12 133851895 + 82785893 82786232 L1PA3long 6157 - 7 346 84023 339 chain 260505 chr12 133851895 + 82815328 82818320 L1PA5 6144 + 3108 6139 15667 68 2 28 93 1 0 682 5 8 5 1 0 637 0 5 660 1 5 50 0 3 787 chain 156560 chr12 133851895 + 82886464 82888367 L1PA4 6152 + 4414 6151 23789 1398 1 0 235 165 0 104 chain 4315 chr12 133851895 + 82888163 82888211 L1PA4 6152 + 5946 5994 203020 48 chain 56217 chr12 133851895 + 82926218 82926857 L1PA5 6144 + 5407 6047 55010 492 0 1 147 chain 8869 chr12 133851895 + 82926857 82926952 L1PA5 6144 + 6048 6143 166289 95 chain 500951 chr12 133851895 + 82938964 82945125 L1PA5 6144 - 1 6144 6786 767 0 1 81 2 0 267 1 2 713 1 0 305 0 14 220 3 0 264 1 0 262 0 7 37 1 0 6 0 1 109 0 1 217 5 0 219 0 2 58 0 1 101 18 6 1313 13 4 131 1 0 4 1 2 76 25 0 741 58 57 20 7 21 113 chain 35283 chr12 133851895 + 82952236 82952801 L1PA11 4918 - 409 2831 75817 21 1 0 15 2 0 66 2 0 13 2 1 27 29 20 5 0 2 7 0 1 7 1 0 44 0 1 120 6 5 129 0 1870 68 chain 37780 chr12 133851895 + 82971213 82971887 L1PB1 5432 - 2 598 72442 4 1 0 4 0 1 17 1 0 12 1 0 22 1 0 24 2 0 14 1 0 8 2 0 19 10 1 8 2 0 15 1 0 45 1 0 15 2 1 51 18 13 12 1 0 5 2 1 23 43 0 10 1 2 60 17 10 199 chain 25461 chr12 133851895 + 82973588 82973884 L1PA5 6144 - 2 294 102405 7 4 0 285 chain 3741 chr12 133851895 + 82974759 82974809 L1M4c 1769 + 1693 1742 211310 36 1 0 13 chain 12668 chr12 133851895 + 82980421 82980566 L1PA7 6471 - 4502 4647 149575 145 chain 367226 chr12 133851895 + 82980570 82985104 L1PA7 6471 + 1948 6467 11177 537 1 0 152 2 0 156 0 1 302 0 4 403 1 0 6 0 1 164 27 0 979 10 18 951 0 2 85 1 2 279 0 3 233 9 11 71 0 1 72 5 0 79 2 0 7 chain 55227 chr12 133851895 + 83022132 83022855 L1PA7 6471 - 2 726 55568 22 5 4 4 0 1 158 6 7 528 chain 432874 chr12 133851895 + 83022907 83029400 L1PA4 6152 - 1 6141 9241 259 1 0 244 31 12 1007 1 0 863 16 8 617 35 0 604 0 1 143 0 1 4 1 0 9 0 2 56 2 1 463 0 16 130 1 2 251 11 8 22 116 117 51 95 86 65 73 74 48 31 26 124 8 25 22 52 31 23 25 26 34 233 155 50 19 0 36 30 26 15 384 181 28 51 65 109 chain 153365 chr12 133851895 + 83046211 83047919 L1PA4 6152 - 1 1703 24175 155 1 0 345 0 1 97 12 6 1098 chain 88824 chr12 133851895 + 83052258 83053552 LTR12D 1347 - 0 1347 40074 265 2 1 32 1 0 27 4 0 147 12 8 161 16 8 78 0 4 49 2 0 6 5 38 190 36 67 14 4 11 5 3 0 12 43 44 114 0 1 7 1 0 58 chain 4110 chr12 133851895 + 83068597 83068868 Zaphod 902 - 19 335 205781 5 2 0 44 4 0 7 183 237 18 3 0 5 chain 24794 chr12 133851895 + 83098632 83099099 L1PB1 5432 + 4980 5420 105924 123 13 11 24 1 0 9 1 0 10 5 1 9 2 0 53 2 1 16 1 0 43 1 0 14 52 41 11 2 0 26 1 0 19 3 4 9 1 0 16 chain 24757 chr12 133851895 + 83107167 83107518 THE1B 368 - 0 368 106131 188 18 17 31 11 14 59 0 15 44 chain 28351 chr12 133851895 + 83110140 83110440 AluYg6 310 - 10 310 91762 300 chain 9331 chr12 133851895 + 83111814 83111943 MER85 139 + 0 138 163896 93 9 18 27 chain 19291 chr12 133851895 + 83118093 83118458 THE1D 372 + 0 372 129266 49 36 29 82 5 10 10 9 14 35 14 17 59 7 8 59 chain 56492 chr12 133851895 + 83119310 83120053 MER4E1 777 - 9 764 54856 82 0 4 18 0 1 104 20 18 159 1 8 206 0 1 66 0 1 87 chain 24388 chr12 133851895 + 83120387 83120679 AluY 311 + 10 304 108147 116 0 2 176 chain 101446 chr12 133851895 + 83122367 83123927 LTR12C 1709 + 0 1699 36409 211 87 90 38 6 52 72 16 15 47 0 1 193 0 118 19 0 2 46 4 5 74 3 4 99 39 36 76 63 32 30 0 3 358 5 4 74 chain 3576 chr12 133851895 + 83140727 83140880 MLT1E2 623 + 399 550 214040 36 95 93 22 chain 39039 chr12 133851895 + 83144884 83145326 L1PA3long 6157 + 5715 6157 70679 442 chain 22528 chr12 133851895 + 83145991 83146288 AluSx1 309 + 10 306 117901 123 12 11 162 chain 49903 chr12 133851895 + 83158388 83159018 PRIMA4_LTR 623 - 0 623 59089 68 5 4 137 0 4 26 8 0 198 0 1 93 2 1 30 1 0 36 1 0 25 chain 13573 chr12 133851895 + 83195362 83195570 LTR12C 1709 - 892 1059 146083 110 41 0 57 chain 49557 chr12 133851895 + 83198657 83199245 LTR10C 591 - 0 591 59352 81 8 10 458 0 1 41 chain 45378 chr12 133851895 + 83241199 83241726 L1PA6 6164 + 5630 6156 62619 381 7 6 139 chain 92322 chr12 133851895 + 83259001 83260030 L1P1 4361 + 2192 3219 38874 973 2 0 54 chain 5118 chr12 133851895 + 83269807 83269920 HAL1-2a_MD 234 - 7 234 193888 43 1 146 12 13 0 14 18 0 12 chain 16501 chr12 133851895 + 83273058 83273332 MER1B 344 - 5 302 136917 17 0 9 32 19 29 139 26 30 41 chain 28903 chr12 133851895 + 83275773 83276077 AluYa5 310 - 6 310 89448 304 chain 3803 chr12 133851895 + 83319710 83319754 Tigger1 2417 + 632 676 210359 44 chain 58289 chr12 133851895 + 83328006 83328723 L1PA7 6471 - 2 723 53813 5 2 0 5 3 0 267 6 7 229 0 7 88 0 1 112 chain 27183 chr12 133851895 + 83364116 83364411 AluYb8 318 - 25 318 95652 167 2 0 126 chain 32240 chr12 133851895 + 83393618 83395612 THE1B-int 1605 - 5 1400 80460 268 5 6 16 1544 942 84 0 2 77 chain 47536 chr12 133851895 + 83400300 83400881 L1PA6 6164 + 5575 6162 60818 125 2 0 131 0 2 92 4 0 51 1 18 104 7 0 64 chain 5526 chr12 133851895 + 83403518 83403585 Charlie3 2679 - 0 67 189786 67 chain 14543 chr12 133851895 + 83422989 83423213 MER30 238 + 0 237 142743 4 0 1 93 33 45 94 chain 25900 chr12 133851895 + 83431782 83432068 L1PA4 6152 + 5857 6143 100434 286 chain 27219 chr12 133851895 + 83443254 83443742 L1PA15 4387 - 42 510 95526 16 5 0 14 3 1 41 9 6 41 24 18 12 36 37 29 1 0 26 5 4 168 1 0 47 2 0 8 chain 376164 chr12 133851895 + 83462532 83468186 L1PB1 5432 - 28 5413 10879 13 0 3 18 1 0 24 2 0 14 8 5 16 9 0 16 3 0 14 1 0 44 7 6 10 2 1 50 40 32 24 1 0 5 7 6 50 2 1 5 0 1 29 0 12 379 2 0 5 1 0 8 0 4 117 3 1 85 0 12 14 5 1 12 7 6 192 1 5 205 1 0 181 0 1 45 4 0 416 9 10 18 0 1 258 320 0 69 20 33 92 8 0 185 1 0 31 2 1 119 2 0 219 0 2 82 0 1 11 0 2 339 0 4 8 0 1 164 61 65 31 0 1 10 0 1 9 0 4 26 4 10 110 3 9 10 36 35 64 17 18 12 0 4 16 0 2 14 0 2 467 0 4 140 21 20 33 27 27 163 0 1 55 0 3 47 1 0 82 0 1 110 0 11 30 chain 395182 chr12 133851895 + 83509833 83515376 L1PB1 5432 - 111 5413 10273 24 14 1 16 1 0 44 1 0 10 0 1 4 2 1 50 20 14 10 1 0 8 1 0 23 15 0 12 1 0 291 0 2 187 9 11 100 5 9 176 0 1 120 0 2 18 275 45 222 1 2 126 0 1 55 35 22 226 1 0 96 1 0 465 0 8 24 10 13 55 0 4 232 1 6 84 0 1 48 0 5 438 6 8 182 0 3 26 0 1 94 0 1 92 0 7 175 14 9 10 7 0 5 1 0 371 6 7 93 1 0 333 0 4 40 1 0 23 6 7 115 1 0 383 chain 21029 chr12 133851895 + 83511007 83511260 L1PB1 5432 + 2921 3174 123815 253 chain 5821 chr12 133851895 + 83534374 83534446 LTR12C 1709 + 677 749 186934 72 chain 22236 chr12 133851895 + 83542502 83542751 L1PA3long 6157 + 5906 6155 119184 249 chain 63874 chr12 133851895 + 83548478 83549311 L1PA11 4918 + 3682 4508 51067 370 1 0 4 0 1 279 1 0 57 2 1 13 2 0 66 3 1 14 1 0 20 chain 25201 chr12 133851895 + 83581529 83581850 AluSp 311 - 4 311 103733 56 4 0 119 13 0 38 0 3 91 chain 39937 chr12 133851895 + 83594627 83595088 LTR2 463 + 0 463 69411 304 0 1 63 0 1 94 chain 117142 chr12 133851895 + 83602363 83603711 L1PA6 6164 - 8 1350 32075 471 5 1 376 2 0 494 chain 5548 chr12 133851895 + 83617155 83617225 MLT2B2 565 - 490 560 189587 70 chain 515483 chr12 133851895 + 83620618 83627052 L1PA7 6471 - 1 6471 5622 849 1 0 323 2 1 265 0 11 36 1 0 500 0 2 399 14 15 45 0 1 21 1 0 396 1 0 74 0 3 6 3 1 19 1 0 17 6 2 688 0 1 256 5 6 295 6 22 457 0 1 12 0 1 353 0 1 354 1 13 306 33 32 269 7 5 412 chain 113313 chr12 133851895 + 83627117 83628456 L1PA4 6152 - 1 1340 33275 1339 chain 111553 chr12 133851895 + 83632137 83633663 L1PA10 4194 - 33 1605 33792 11 1 0 33 4 1 473 10 35 153 21 39 82 5 0 6 5 4 62 2 1 82 1 2 35 1 6 63 1 0 110 0 2 67 3 6 205 3 7 87 chain 24888 chr12 133851895 + 83640169 83640450 LTR19B 566 - 285 566 105422 281 chain 86358 chr12 133851895 + 83653772 83654771 L1PA5 6144 - 15 1040 41014 490 0 27 325 7 6 177 chain 113727 chr12 133851895 + 83661128 83662599 L1PA8 5853 - 3 1426 33169 90 1 0 7 0 17 48 1 0 8 1 0 72 2 0 46 1 0 25 0 1 163 58 0 364 2 0 8 2 1 245 0 1 327 chain 387699 chr12 133851895 + 83665759 83670549 L1PA7 6471 - 2 5545 10531 11 0 2 52 0 1 69 7 6 5 0 1 705 1 4 190 0 1 521 0 551 333 15 13 208 1 0 299 0 1 64 0 1 66 0 158 552 0 1 21 0 1 179 0 1 446 4 0 538 0 1 88 1 0 73 5 45 262 10 9 64 chain 47114 chr12 133851895 + 83674117 83674672 L1PA7 6471 + 5881 6455 61116 163 0 19 392 chain 156794 chr12 133851895 + 83675699 83677645 HERVL-int 5654 - 10 1960 23759 148 0 1 269 2 1 42 0 1 9 5 3 338 11 12 311 6 9 417 1 2 387 chain 20991 chr12 133851895 + 83677720 83677989 THE1A 353 + 86 353 123951 24 1 0 87 1 0 156 chain 57642 chr12 133851895 + 83677989 83678741 THE1A-int 1579 + 0 755 54167 44 0 1 4 5 4 80 6 6 378 10 13 225 chain 5359 chr12 133851895 + 83687276 83687386 L1M1 2793 + 776 883 191442 26 2 1 28 3 1 7 1 0 9 5 6 29 chain 504762 chr12 133851895 + 83693234 83699640 L1PA7 6471 + 6 6454 6556 110 0 1 4 2 1 74 17 16 185 10 11 202 1 2 596 0 1 54 23 23 558 1 0 118 0 1 24 0 1 6 5 7 76 0 5 54 0 1 302 0 4 103 0 7 88 7 6 234 0 1 614 0 1 53 0 4 447 2 1 32 7 8 232 0 1 387 6 10 263 0 1 212 0 3 181 3 1 106 0 1 98 1 3 80 11 14 640 1 3 176 chain 20582 chr12 133851895 + 83701808 83702170 THE1C 375 + 8 375 125357 96 23 14 61 56 70 126 chain 71828 chr12 133851895 + 83715009 83715856 L1PA7 6471 - 1 847 47550 9 4 0 63 0 3 771 chain 96129 chr12 133851895 + 83775461 83776647 L1PA8 5853 + 4671 5853 37785 335 2 3 212 6 7 97 0 1 238 1 0 45 2 0 71 1 0 8 1 0 56 1 0 16 1 0 93 chain 20935 chr12 133851895 + 83786969 83787218 AluSg4 309 + 60 308 124165 71 1 0 177 chain 145154 chr12 133851895 + 83795473 83797138 L1PA5 6144 - 2 1667 25302 1665 chain 20421 chr12 133851895 + 83797138 83797367 L1PA5 6144 + 4224 4453 125005 229 chain 9362 chr12 133851895 + 83801313 83801415 L1PA3long 6157 - 0 102 163746 102 chain 199466 chr12 133851895 + 83814166 83816453 L1PA5 6144 - 6 2323 19244 95 0 17 572 1 5 154 0 2 407 0 2 389 0 4 430 0 1 239 chain 176923 chr12 133851895 + 83819800 83822320 L1PA8 5853 - 0 2463 21258 92 6 5 15 2 1 38 34 32 59 6 4 43 1 0 477 5 1 74 0 2 7 4 0 79 1 0 20 6 7 518 6 8 31 6 0 19 0 1 60 14 18 47 0 2 191 7 15 28 2 1 271 23 1 15 44 12 269 chain 81013 chr12 133851895 + 83822344 83823233 L1PA3long 6157 - 10 899 43188 136 1 0 192 0 1 560 chain 69705 chr12 133851895 + 83829960 83830744 L1PA4 6152 - 6 791 48522 589 0 1 195 chain 114667 chr12 133851895 + 83839246 83841031 THE1A-int 1579 + 1 1579 32895 152 0 3 20 0 3 103 0 2 6 223 6 51 2 0 10 5 6 60 2 3 6 1 0 18 45 47 270 0 1 405 5 6 381 9 8 11 chain 42966 chr12 133851895 + 83844138 83844593 L1HS 6032 + 5577 6032 65453 455 chain 6962 chr12 133851895 + 83854234 83854518 MLT1A0 366 - 53 340 177736 60 106 110 26 60 59 4 0 1 16 2 1 10 chain 122252 chr12 133851895 + 83893207 83894778 THE1A-int 1579 + 0 1579 30296 266 0 3 154 1 0 54 21 21 4 0 1 178 0 1 4 1 0 194 0 3 102 5 6 102 6 5 32 0 1 146 0 1 301 chain 27235 chr12 133851895 + 83894778 83895131 THE1A 353 + 0 353 95479 89 0 2 18 2 1 88 1 0 155 chain 92188 chr12 133851895 + 83898079 83899134 L1PA4 6152 + 5080 6140 38905 223 0 3 123 0 1 47 1 2 661 chain 235813 chr12 133851895 + 83899152 83902469 HERVL-int 5654 + 1715 4795 16990 103 0 1 5 1 0 78 0 1 6 7 6 8 0 1 240 1 0 313 0 54 24 0 1 105 293 0 183 6 4 425 7 5 670 1 5 364 5 6 434 6 0 10 1 7 21 chain 52102 chr12 133851895 + 83918073 83918634 L1PA2 6032 + 5453 6014 57563 561 chain 21942 chr12 133851895 + 83923116 83923361 L1PA5 6144 + 5899 6144 120449 245 chain 395282 chr12 133851895 + 83938165 83942892 L1PA6 6164 - 2 4746 10268 374 1 2 33 0 5 429 0 6 947 7 11 535 0 1 177 0 1 1311 4 0 8 0 2 178 2 1 461 6 8 254 chain 531421 chr12 133851895 + 83942895 83949041 L1PA4 6152 - 0 6152 4028 105 7 12 1170 1 0 748 0 2 243 0 2 667 1 0 26 1 0 149 1 0 149 1 2 565 1 0 4 0 1 1071 2 0 180 0 1 476 0 4 13 1 2 85 0 1 192 7 2 280 chain 110766 chr12 133851895 + 83949041 83950460 L1P2 5180 - 3757 5178 33960 630 1 0 6 1 0 224 1 0 48 0 1 271 1 0 6 0 2 30 23 22 33 1 0 15 0 5 128 chain 110492 chr12 133851895 + 83956967 83958333 L1PA7 6471 - 7 1387 34074 8 5 0 135 0 6 6 7 1 514 0 1 162 0 7 9 0 1 8 0 4 254 1 0 76 0 7 181 chain 136489 chr12 133851895 + 83964257 83965759 L1PA3long 6157 + 4654 6156 26746 1502 chain 77532 chr12 133851895 + 83970230 83971209 L1PA8A 6298 - 17 1080 44724 95 3 10 24 0 4 296 1 0 174 5 0 187 0 3 20 0 65 56 4 0 41 0 15 73 chain 536775 chr12 133851895 + 83978045 83984024 L1PA2 6032 + 0 6032 3341 252 5 4 461 0 1 81 0 53 2291 0 2 1066 8 4 17 0 2 1798 chain 371703 chr12 133851895 + 83985203 83989466 L1PA4 6152 + 1842 6134 11030 10 0 1 802 9 22 154 4 0 67 0 1 1323 0 1 509 0 12 554 1 5 762 1 2 67 chain 211648 chr12 133851895 + 83991509 83994228 L1PA7 6471 + 3735 6469 18384 145 0 16 113 14 0 202 1 4 64 0 3 195 13 19 182 0 2 128 9 1 76 0 1 38 8 4 42 0 1 177 0 3 469 1 4 53 5 3 15 7 8 15 1 2 77 0 1 83 2 5 422 1 0 5 2 0 7 0 2 147 chain 11413 chr12 133851895 + 83999858 84000000 L1PBa 3878 + 3044 3187 154625 4 0 1 138 chain 159177 chr12 133851895 + 84000000 84002599 L1PB1 5432 + 2971 5409 23444 218 5 7 383 1 0 4 8 9 117 0 1 106 10 10 96 12 13 23 1 0 4 0 1 66 4 0 181 1 0 65 19 21 88 0 1 136 1 5 10 16 10 53 21 23 21 0 1 31 2 3 337 10 1 21 9 16 29 0 3 15 147 9 5 1 0 24 1 0 5 20 15 9 2 0 52 1 0 10 9 8 21 6 5 18 1 0 15 24 12 19 13 10 9 2 0 18 0 1 5 1 0 22 0 3 9 1 0 5 chain 33505 chr12 133851895 + 84038435 84038819 L1PA4 6152 + 3957 4344 78402 302 0 3 82 chain 160527 chr12 133851895 + 84038819 84040623 L1PA4 6152 + 4348 6151 23264 1544 1 0 259 chain 29017 chr12 133851895 + 84042284 84042594 AluYa5 310 + 0 309 88916 132 1 0 177 chain 286633 chr12 133851895 + 84065603 84068663 L1HS 6032 - 2744 5799 14250 2911 6 1 143 chain 150803 chr12 133851895 + 84068666 84070275 L1HS 6032 + 4423 6032 24499 1609 chain 498256 chr12 133851895 + 84075023 84081472 L1PA7 6471 + 5 6470 6939 191 9 8 153 0 1 4 1 0 190 0 1 118 61 59 371 1 2 127 5 1 184 1 4 451 0 1 183 0 1 107 0 1 305 3 9 292 1 3 95 0 1 629 8 0 52 0 4 807 5 4 5 0 1 298 0 4 28 6 7 784 11 7 19 19 20 65 0 4 8 0 2 107 1 2 369 0 1 29 7 8 143 13 12 11 1 2 166 1 0 4 chain 15499 chr12 133851895 + 84082663 84082885 L1PA6 6164 + 5941 6162 139900 57 5 6 19 2 3 20 0 1 106 4 0 9 chain 11064 chr12 133851895 + 84087383 84087513 L1PA7 6471 + 5 135 155950 130 chain 26996 chr12 133851895 + 84087515 84087888 L1PA7 6471 + 1386 1759 96296 40 1 0 4 0 1 117 27 27 184 chain 30463 chr12 133851895 + 84087902 84088281 L1PA7 6471 + 1765 2144 83507 379 chain 33421 chr12 133851895 + 84088282 84088689 L1PA7 6471 + 2144 2551 78406 407 chain 2482 chr12 133851895 + 84088689 84088848 L1PA7 6471 + 2933 3094 67875 45 0 2 114 chain 141013 chr12 133851895 + 84088852 84090630 LTR12C 1709 - 0 1709 25982 481 16 20 90 9 6 163 78 0 112 1 0 341 0 9 487 chain 4127 chr12 133851895 + 84089611 84089660 LTR12C 1709 - 919 968 170574 49 chain 10722 chr12 133851895 + 84090630 84091317 L1PA7 6471 + 3094 3480 67875 59 302 0 72 4 5 250 chain 3011 chr12 133851895 + 84091366 84091398 L1PA7 6471 + 3502 3534 224793 32 chain 36966 chr12 133851895 + 84091410 84091872 L1PA7 6471 + 3549 4024 73559 25 0 5 32 0 1 79 0 1 179 1 2 27 0 5 119 chain 50728 chr12 133851895 + 84091872 84092516 L1PA7 6471 + 4025 4670 58485 462 0 1 182 chain 45947 chr12 133851895 + 84092516 84093083 L1PA7 6471 + 4678 5245 62085 32 0 1 65 1 3 392 3 0 74 chain 97952 chr12 133851895 + 84093084 84094285 L1PA7 6471 + 5249 6459 37292 293 0 1 4 1 0 55 0 1 19 0 6 68 0 1 754 0 1 7 chain 38409 chr12 133851895 + 84112189 84112677 THE1B-int 1605 + 0 513 71563 430 1 26 57 chain 401112 chr12 133851895 + 84113684 84119764 HERVL-int 5654 + 0 5644 10049 9 1 0 106 1 0 296 0 1 208 1 2 33 1 0 128 4 30 48 4 14 100 0 2 60 6 10 77 1 0 122 8 0 184 0 1 51 7 27 45 0 1 140 1 0 29 6 8 68 4 5 11 18 19 237 9 0 8 0 9 24 25 27 58 0 3 5 3 0 262 4 5 71 1 0 243 7 8 206 0 26 17 16 1 20 0 1 132 7 16 220 0 3 25 0 2 6 9 7 259 1 6 5 5 0 29 0 12 87 1 3 86 0 2 335 3 17 12 40 6 205 1 0 38 0 4 7 4 9 45 0 1 202 0 1 72 0 20 174 1 2 106 19 8 134 0 3 23 0 1 63 557 14 113 3 6 57 chain 30572 chr12 133851895 + 84119774 84120218 MLT2A1 477 + 0 475 83261 81 1 2 4 1 0 39 0 1 41 7 4 65 6 7 141 6 38 52 chain 6562 chr12 133851895 + 84121601 84121683 THE1A 353 - 271 353 180770 82 chain 16569 chr12 133851895 + 84122877 84123221 L1PB1 5432 - 14 324 136734 14 1 0 13 1 0 21 1 0 24 2 0 12 55 38 16 1 0 44 1 0 15 2 1 52 2 0 9 5 1 12 1 0 10 1 0 22 1 0 6 chain 410287 chr12 133851895 + 84123841 84130248 L1PA7 6471 - 6 5751 9791 344 0 1 96 7 6 164 0 1 41 0 3 109 12 14 51 0 1 7 0 5 19 0 4 354 1 0 5 0 1 43 0 4 205 0 3 34 0 1 161 2 0 14 0 1 26 0 1 22 0 2 48 2 5 148 23 26 10 0 1 54 30 28 50 0 1 32 0 3 38 1 3 157 9 7 30 7 8 64 0 1 77 1 0 23 0 1 18 11 20 305 11 15 4 1 0 16 9 0 167 13 12 33 18 4 159 1 6 49 0 3 24 5 8 302 7 11 43 0 7 6 6 4 46 10 13 5 0 1 26 0 4 71 7 9 89 0 3 10 0 1 69 10 6 51 729 0 71 0 1 51 0 4 47 1 0 300 6 7 57 10 19 90 0 5 6 10 5 128 0 1 190 34 34 382 2 0 43 1 0 126 chain 66391 chr12 133851895 + 84127970 84128693 L1PA3long 6157 - 0 723 49914 723 chain 6370 chr12 133851895 + 84131582 84131667 L1P3 4156 - 3771 3855 182245 63 3 2 19 chain 144667 chr12 133851895 + 84135234 84137109 L1PA8 5853 + 1793 5847 25375 173 1 3 57 8 4 50 0 3 191 0 4 38 0 1 103 0 2162 31 0 4 439 3 6 34 0 6 37 0 3 132 0 1 289 1 0 44 2 0 74 1 0 58 2 1 19 2 1 86 chain 81489 chr12 133851895 + 84170492 84171444 L1PA4 6152 - 9 980 42977 102 0 1 483 0 1 201 0 3 25 19 23 50 0 10 72 chain 7785 chr12 133851895 + 84175304 84175404 L1PA4 6152 + 5892 5996 172385 80 4 8 16 chain 12541 chr12 133851895 + 84175411 84175558 L1PA4 6152 + 5996 6143 150075 147 chain 244394 chr12 133851895 + 84181123 84183828 L1PA3long 6157 - 0 2712 16539 1492 1 0 12 0 3 296 0 4 303 0 1 601 chain 5548 chr12 133851895 + 84210322 84210392 MER21B 843 - 531 601 189586 70 chain 3746 chr12 133851895 + 84215637 84215681 U6 107 + 14 58 211220 44 chain 4377 chr12 133851895 + 84216915 84216981 L1PB3 3668 - 100 164 202225 40 4 2 22 chain 12240 chr12 133851895 + 84221469 84221746 MER61A 341 - 1 309 151255 32 23 24 7 1 0 16 3 5 34 0 8 12 37 43 74 4 3 15 5 21 14 chain 257875 chr12 133851895 + 84222827 84225753 L1PA5 6144 - 3 2941 15815 606 0 1 1131 0 1 459 0 1 169 0 10 263 1 0 297 chain 142076 chr12 133851895 + 84226453 84228704 MER61-int 3695 - 995 2945 25810 88 2 0 77 0 1 53 0 1 52 0 5 38 5 6 138 1 0 20 2 0 28 8 13 316 313 0 251 0 6 34 0 4 137 1 0 155 7 6 23 0 1 14 7 10 412 33 23 31 0 2 5 chain 24295 chr12 133851895 + 84255440 84255806 THE1A 353 - 0 353 108676 74 5 1 133 2 0 51 5 4 26 21 17 34 2 0 13 chain 35091 chr12 133851895 + 84256779 84257189 L1PA5 6144 + 5734 6144 76062 268 1 0 24 0 1 117 chain 313978 chr12 133851895 + 84264750 84268434 L1P1 4361 + 1 3691 12858 573 1 0 125 6 0 395 2 3 127 0 1 174 4 13 1580 0 1 683 1 2 13 chain 8159 chr12 133851895 + 84288122 84288208 L1PA3long 6157 - 487 573 170180 86 chain 44291 chr12 133851895 + 84288208 84288703 L1PA3long 6157 + 5664 6152 63833 336 7 0 152 chain 111827 chr12 133851895 + 84292196 84293577 L1PA7 6471 - 10 1402 33709 7 0 3 126 0 1 43 1 0 649 0 8 199 0 1 6 3 2 347 chain 68662 chr12 133851895 + 84295931 84296674 L1PA3long 6157 + 5415 6157 48956 227 1 0 515 chain 39485 chr12 133851895 + 84296680 84297163 L1P2 5180 + 3295 3781 70038 162 0 1 78 0 1 65 0 1 178 chain 29066 chr12 133851895 + 84338715 84339017 AluYa5 310 - 8 310 88695 302 chain 3635 chr12 133851895 + 84343523 84343563 LTR33B 472 + 379 419 213056 40 chain 8164 chr12 133851895 + 84350478 84350570 THE1C 375 + 258 350 170151 92 chain 47426 chr12 133851895 + 84369999 84370617 L1PA8 5853 + 5242 5853 60881 322 1 0 46 2 0 67 24 22 41 2 1 19 1 0 93 chain 11520 chr12 133851895 + 84372920 84373085 MER30 238 - 6 200 154216 42 3 0 34 0 10 8 1 23 77 chain 530404 chr12 133851895 + 84399683 84405707 L1PA3long 6157 - 2 6157 4140 971 0 1 894 0 1 836 0 3 1241 0 2 40 8 0 53 3 0 25 0 1 4 0 1 1060 1 0 113 0 128 163 0 4 30 0 4 96 5 1 37 5 6 286 0 1 4 14 0 9 0 14 126 chain 89389 chr12 133851895 + 84411723 84414224 L1PA8A 6298 + 1920 4126 12450 8 0 15 61 1 2 127 2 1 366 1 2 34 1 0 4 8 9 20 1 3 138 378 53 444 0 1 12 0 1 132 1 2 11 0 1 46 0 4 31 1 0 100 0 1 13 0 1 45 0 1 262 0 1 96 0 1 157 chain 381926 chr12 133851895 + 84414235 84418591 L1PA4 6152 + 1793 6152 10699 970 0 1 354 0 1 1545 0 1 289 4 0 344 0 4 850 chain 77594 chr12 133851895 + 84418610 84420781 L1PA8A 6298 + 4126 6291 12450 31 0 1 86 0 1 428 0 2 654 22 3 149 7 10 77 0 2 578 0 4 139 chain 456431 chr12 133851895 + 84431377 84437756 L1PA7 6471 - 1 6208 8526 440 4 323 65 6 9 18 2 0 15 493 1 100 1 2 321 27 28 670 11 11 276 9 4 6 0 5 83 6 5 255 1 0 209 7 8 4 1 0 50 9 13 19 2 0 33 1 0 390 8 10 178 0 13 998 3 2 86 0 4 6 1 0 138 0 2 113 5 6 146 0 1 583 4 3 135 1 3 269 30 7 141 chain 5764 chr12 133851895 + 84446975 84447086 L1MA2 4263 - 165 271 187494 13 1 3 23 20 13 54 chain 34122 chr12 133851895 + 84459631 84460054 L1PB1 5432 - 744 1174 77445 62 3 0 206 0 10 152 chain 33203 chr12 133851895 + 84460054 84460474 L1PB1 5432 + 4689 5103 78876 381 7 1 32 chain 29194 chr12 133851895 + 84466121 84466428 AluYa5 310 - 3 310 88078 307 chain 32587 chr12 133851895 + 84468851 84469218 L1PA3long 6157 + 5790 6157 79879 367 chain 29972 chr12 133851895 + 84484487 84484800 AluYb8 318 - 5 318 84905 313 chain 306912 chr12 133851895 + 84490929 84494870 L1P3 4156 + 0 3981 13135 31 1 3 52 0 14 137 16 25 58 1 0 77 3 0 95 20 21 265 4 1 74 4 5 128 4 5 755 3 4 43 1 14 83 0 1 158 0 4 497 0 1 87 1 2 109 2 1 1083 1 0 148 chain 81089 chr12 133851895 + 84494877 84495919 MER11C 1089 + 0 1059 43147 242 4 13 62 0 4 64 1 0 241 5 6 58 1 5 7 1 0 35 0 1 127 0 1 54 1 0 139 chain 81271 chr12 133851895 + 84496108 84497425 HERVK11-int 2540 - 305 1555 43056 62 1 2 141 13 12 14 0 3 128 0 1 37 1 0 104 26 21 416 72 41 21 5 4 12 11 1 18 42 38 20 10 9 65 2 0 35 1 0 21 23 8 16 chain 78649 chr12 133851895 + 84502139 84503194 MER11C 1089 - 16 1089 44207 8 0 1 145 1 0 55 0 1 5 20 21 100 0 1 37 1 0 4 5 9 110 28 0 9 7 35 146 1 0 65 0 4 62 4 13 242 chain 191553 chr12 133851895 + 84503194 84505698 L1PA7 6471 + 3985 6467 19906 32 0 1 187 0 4 84 4 14 448 0 1 401 29 4 462 0 6 328 0 1 64 63 33 242 3 15 36 10 11 96 3 0 12 chain 52794 chr12 133851895 + 84515586 84516189 L1PA5 6144 + 5541 6144 57136 603 chain 4860 chr12 133851895 + 84539134 84539211 MADE1 96 + 2 96 196679 49 10 27 18 chain 35915 chr12 133851895 + 84539916 84540356 L1PA8A 6298 - 10 459 74995 15 1 0 262 0 10 162 chain 100042 chr12 133851895 + 84548182 84549464 LTR12C 1709 - 0 1709 36767 44 0 131 57 44 14 22 0 1 93 0 2 117 0 4 107 9 325 289 0 1 13 0 1 270 0 1 217 chain 30071 chr12 133851895 + 84554124 84554442 AluYb8 318 - 0 318 84606 318 chain 24067 chr12 133851895 + 84558552 84558907 THE1B 368 - 0 368 109944 36 4 5 78 5 6 74 1 0 83 9 23 48 2 0 15 chain 16865 chr12 133851895 + 84581217 84581666 L1PB1 5432 + 4994 5424 135926 109 59 64 53 18 16 39 98 80 15 1 0 21 10 9 4 1 0 16 1 0 4 chain 165158 chr12 133851895 + 84589666 84592137 L1PA7 6471 + 3148 6465 22637 124 2 4 324 7 6 129 0 1167 364 11 12 184 5 6 154 0 3 231 0 3 288 327 0 312 3 0 6 chain 46303 chr12 133851895 + 84598977 84599524 L1PA4 6152 + 5582 6141 61770 414 15 26 16 0 1 102 chain 3880 chr12 133851895 + 84601690 84601732 tRNA-Gln-CAG 43 - 1 43 209172 42 chain 16259 chr12 133851895 + 84613079 84613392 THE1C 375 - 2 375 137582 124 45 55 10 2 3 23 1 51 16 15 0 8 1 15 68 chain 11951 chr12 133851895 + 84633171 84633371 HSMAR2 1300 + 1031 1233 152403 13 43 45 144 chain 3798 chr12 133851895 + 84647823 84647866 L1HS 6032 - 2 45 210414 43 chain 35442 chr12 133851895 + 84647866 84648275 L1PA4 6152 + 5709 6118 75628 409 chain 71700 chr12 133851895 + 84667386 84668180 L1PA3long 6157 - 0 794 47604 259 1 0 399 0 1 135 chain 4644 chr12 133851895 + 84670142 84670214 LTR50 688 - 562 635 199128 31 6 7 35 chain 52510 chr12 133851895 + 84704267 84704846 L1PA3long 6157 + 5578 6157 57300 579 chain 17992 chr12 133851895 + 84714135 84714343 L1PA5 6144 - 7 218 132880 113 0 2 32 0 1 63 chain 11464 chr12 133851895 + 84715193 84715322 L1PA5 6144 + 6012 6141 154454 129 chain 25634 chr12 133851895 + 84720641 84720935 AluY 311 + 5 300 101565 127 0 1 167 chain 20085 chr12 133851895 + 84728551 84728900 THE1D 372 + 28 372 126872 25 9 0 13 13 14 86 32 34 23 1 0 60 6 8 81 chain 7248 chr12 133851895 + 84752919 84753011 LTR18A 364 + 262 353 175780 4 1 0 87 chain 19360 chr12 133851895 + 84761856 84762128 L1PA8 5853 + 5586 5852 129045 24 4 2 66 2 1 14 1 0 47 2 1 19 8 7 85 chain 17894 chr12 133851895 + 84765833 84766061 L1P1 4361 - 20 245 132314 12 2 1 23 1 0 157 1 0 32 chain 164722 chr12 133851895 + 84766061 84767916 L1P1 4361 + 2250 4105 22695 921 1 0 65 0 1 868 chain 40933 chr12 133851895 + 84771440 84771898 L1PA5 6144 + 5686 6144 67993 458 chain 47324 chr12 133851895 + 84775913 84776478 L1PA7 6471 - 15 581 60952 134 0 2 104 1 0 326 chain 233129 chr12 133851895 + 84785821 84788901 HERV9-int 5642 - 818 5629 17135 125 13 12 51 0 1795 491 0 6 321 1 17 215 0 3 474 2 0 34 0 3 166 1 2 6 93 0 98 15 18 50 1 0 6 0 1 133 0 1 5 8 6 5 1 0 64 0 4 17 0 1 39 0 1 40 22 18 583 chain 3320 chr12 133851895 + 84787753 84787791 HERV9-int 5642 - 4558 4596 218601 38 chain 36543 chr12 133851895 + 84788950 84789426 LTR12_ 688 - 15 688 74180 188 4 8 22 0 103 182 3 93 77 chain 25521 chr12 133851895 + 84870706 84871121 L1PA8 5853 + 5442 5850 102135 79 1 0 43 1 0 44 2 0 70 38 37 25 2 1 13 0 7 6 13 8 5 3 0 70 chain 41353 chr12 133851895 + 84877457 84878004 MLT2A2 560 + 0 560 67469 190 16 18 198 0 11 143 chain 39097 chr12 133851895 + 84883577 84884011 L1PA5 6144 - 6 440 70605 107 1 0 225 0 1 101 chain 3784 chr12 133851895 + 84937435 84937497 L1MA4A 3247 - 3098 3160 210608 28 1 2 20 1 0 12 chain 28971 chr12 133851895 + 84949531 84949833 AluYb8 318 - 16 318 89132 302 chain 241293 chr12 133851895 + 84969157 84972889 L1PA10 4194 + 853 4122 16706 415 0 1 38 1 2 194 0 1 96 135 7 36 0 1 20 5 1 171 0 1 178 0 4 221 13 13 289 0 1 39 5 0 20 27 22 38 0 1 18 16 6 59 1 2 52 8 7 895 318 1 180 6 0 35 10 8 46 1 6 103 0 1 34 3 0 6 chain 138536 chr12 133851895 + 84985632 84987157 L1PA3long 6157 + 4632 6157 26388 1525 chain 60751 chr12 133851895 + 85006435 85007122 L1PA4 6152 - 15 704 52447 132 1 2 379 0 1 175 chain 28183 chr12 133851895 + 85007128 85007459 L1PA4 6152 + 5123 5459 92367 100 1 2 79 0 4 151 chain 9324 chr12 133851895 + 85017190 85017289 L1PA3long 6157 + 6058 6157 163932 99 chain 31533 chr12 133851895 + 85093007 85093475 MLT2A1 477 + 4 475 81595 50 3 0 88 0 1 25 1 5 152 1 0 24 1 2 29 0 4 14 2 0 5 13 0 8 4 0 13 0 16 35 chain 2522 chr12 133851895 + 85120554 85120623 Tigger2b_Pri 1066 - 998 1066 232894 13 30 29 26 chain 60423 chr12 133851895 + 85127403 85128172 L1PA7 6471 - 1 750 52627 6 4 0 59 4 0 585 25 12 44 0 1 42 chain 29059 chr12 133851895 + 85130471 85130776 AluYg6 310 - 5 310 88723 305 chain 26749 chr12 133851895 + 85155616 85155897 AluYa5 310 + 20 301 97170 281 chain 4441 chr12 133851895 + 85156198 85156341 MER3 215 + 0 153 201433 29 76 86 38 chain 37322 chr12 133851895 + 85159485 85159955 MER4A1 472 + 2 472 73059 470 chain 36043 chr12 133851895 + 85187750 85188192 LTR17 781 + 255 696 74841 72 1 0 369 chain 198012 chr12 133851895 + 85188286 85190675 HERV17-int 4347 + 279 4343 19354 110 5 6 24 1 0 197 0 1 39 0 1 64 1 0 516 0 1 825 19 1691 160 0 1 428 chain 25821 chr12 133851895 + 85192125 85192453 LTR17 781 + 0 326 100788 57 1 0 122 1 0 147 chain 7046 chr12 133851895 + 85213035 85213211 L1MA5A 2387 + 2155 2286 177148 25 2 0 37 3 0 13 32 6 7 7 0 5 0 1 30 8 0 7 chain 12586 chr12 133851895 + 85233346 85233507 L1PA5 6144 + 5975 6137 149900 24 1 2 136 chain 21127 chr12 133851895 + 85282989 85283251 AluY 311 + 2 261 123460 130 0 1 97 5 1 30 chain 4569 chr12 133851895 + 85283314 85283371 MER39 703 + 521 581 200011 5 0 3 52 chain 4789 chr12 133851895 + 85287748 85287801 U2 167 - 114 167 197472 53 chain 10937 chr12 133851895 + 85297051 85297178 L1PA5 6144 + 6017 6144 156456 127 chain 3138 chr12 133851895 + 85304733 85304766 LTR46 455 + 422 455 222209 33 chain 7070 chr12 133851895 + 85313727 85313895 MER44C 733 - 121 293 176948 73 74 78 21 chain 30292 chr12 133851895 + 85326838 85327201 L1PA7 6471 + 6107 6470 83955 29 0 1 329 1 0 4 chain 90167 chr12 133851895 + 85359672 85360881 L1PA8 5853 - 0 1219 39587 27 4 0 65 2 1 19 2 1 34 17 18 9 2 1 69 2 0 47 4 20 23 12 9 43 1 8 450 2 0 375 chain 26578 chr12 133851895 + 85396479 85396823 THE1A 353 + 0 341 97733 108 3 2 92 2 0 139 chain 49392 chr12 133851895 + 85440372 85440928 L1PA5 6144 + 5576 6132 59453 556 chain 100290 chr12 133851895 + 85462720 85463833 L1PA4 6152 - 1 1116 36694 811 0 2 302 chain 3551 chr12 133851895 + 85463833 85463871 L1PA4 6152 + 4993 5031 205746 38 chain 199393 chr12 133851895 + 85480739 85483014 L1PA5 6144 - 16 2296 19253 130 1 2 191 5 4 507 1 0 922 0 1 4 0 1 18 0 4 496 chain 17720 chr12 133851895 + 85491152 85491390 L1PA5 6144 - 109 352 133646 20 4 16 10 2 0 7 6 1 189 chain 103254 chr12 133851895 + 85541978 85543290 L1PA8A 6298 - 7 1318 35937 76 27 26 325 0 1 373 2 1 509 chain 25906 chr12 133851895 + 85561020 85561564 MLT2A1 477 - 2 477 100410 41 4 0 8 48 79 36 0 1 21 98 0 85 34 35 169 chain 81638 chr12 133851895 + 85561564 85562696 HERVL-int 5654 - 0 1181 42913 221 4 0 54 45 89 20 0 8 184 15 17 27 0 4 461 5 0 96 chain 4138 chr12 133851895 + 85564062 85564114 HERVL-int 5654 - 169 221 205393 52 chain 6294 chr12 133851895 + 85564118 85564193 HERVL-int 5654 - 221 296 182855 75 chain 34670 chr12 133851895 + 85570155 85570533 L1PA2 6032 + 5654 6032 76665 378 chain 424796 chr12 133851895 + 85586936 85591615 L1PA2 6032 + 1350 6032 9424 1504 0 1 283 1 0 77 0 1 344 2 1 164 2 1 2138 8 0 5 0 8 132 0 4 19 chain 25859 chr12 133851895 + 85609818 85610156 L1PA7 6471 - 18 364 100607 167 0 1 4 1 0 21 0 3 60 0 4 51 5 6 29 chain 59889 chr12 133851895 + 85617898 85618654 L1PA7 6471 + 5679 6451 52882 39 0 3 91 0 2 88 1 12 134 5 6 267 1 0 130 chain 74560 chr12 133851895 + 85620314 85621330 L1PA5 6144 - 0 878 46231 11 0 4 174 6 8 341 12 0 192 132 0 148 chain 9951 chr12 133851895 + 85621061 85621177 L1PA4 6152 - 0 123 160827 6 0 7 110 chain 67480 chr12 133851895 + 85621330 85622087 L1PA5 6144 + 4513 5270 49411 757 chain 4774 chr12 133851895 + 85682399 85682458 MIR 256 - 39 98 197648 59 chain 552066 chr12 133851895 + 85706197 85712237 L1PA2 6032 - 0 6030 1185 334 0 3 349 5 2 691 9 0 4397 1 0 254 chain 4060 chr12 133851895 + 85734990 85735393 MLT1D 503 - 2 423 206482 24 6 0 6 14 25 27 302 315 24 chain 11818 chr12 133851895 + 85776164 85776321 L1PA8 5853 + 5697 5853 152951 13 0 1 29 2 1 19 1 0 93 chain 72305 chr12 133851895 + 85795925 85796747 L1PA5 6144 - 13 836 47329 319 1 2 502 chain 17341 chr12 133851895 + 85796747 85796937 L1PA5 6144 + 5127 5317 134677 190 chain 109701 chr12 133851895 + 85826361 85827595 L1PA4 6152 - 11 1246 34279 1007 0 1 227 chain 47043 chr12 133851895 + 85827595 85828117 L1PA4 6152 + 4386 4908 60716 522 chain 83200 chr12 133851895 + 85862717 85863679 LTR5_Hs 974 - 0 974 42251 127 0 1 83 0 1 83 0 5 325 0 1 66 0 1 31 0 1 241 0 2 6 chain 123751 chr12 133851895 + 85872311 85873892 THE1B-int 1605 - 0 1605 29791 929 4 3 209 7 32 432 chain 23735 chr12 133851895 + 85902866 85903283 LTR3A 482 + 3 420 111860 22 1 0 79 0 1 4 0 1 34 3 2 37 17 28 17 55 44 108 5 6 19 1 0 15 chain 7118 chr12 133851895 + 86000278 86000365 MER89 557 - 26 113 176629 87 chain 3794 chr12 133851895 + 86001843 86002223 MLT1C 463 - 50 437 210474 48 1 0 4 306 314 21 chain 49927 chr12 133851895 + 86022204 86022794 L1PA7 6471 - 5 596 59072 517 0 1 73 chain 3711 chr12 133851895 + 86044710 86044755 L1PA12 2803 - 2364 2409 211786 45 chain 7661 chr12 133851895 + 86074171 86074261 Tigger3b 1229 - 64 154 173160 90 chain 6176 chr12 133851895 + 86157072 86157142 L1PA5 6144 + 6062 6132 183768 70 chain 534069 chr12 133851895 + 86179217 86185318 L1PA5 6144 + 19 6132 3698 1210 0 1 1424 0 1 4 2 0 118 1 5 342 1 0 551 2 0 329 0 1 251 0 1 840 1 0 4 0 1 9 0 1 359 0 1 220 18 25 415 chain 454573 chr12 133851895 + 86253651 86260310 L1PA8A 6298 - 9 6264 8595 39 1 3 52 0 1 44 0 1 120 3 23 61 2 0 230 0 1 45 328 1 71 3 0 111 4 0 78 0 1 97 0 1 35 0 1 96 1 0 8 25 26 154 80 0 22 1 0 149 1 0 80 0 1 50 0 4 95 6 8 89 6 5 109 0 2 71 10 17 310 0 2 95 11 1 243 3 6 401 0 8 108 0 3 221 1 0 121 6 10 243 9 1 206 1 2 256 0 1 15 0 1 85 0 1 17 0 2 792 2 0 21 9 13 91 0 1 232 0 1 8 11 10 199 19 19 29 1 0 48 1 0 4 6 7 17 6 4 10 2 1 14 3 1 71 6 0 5 2 0 9 7 22 33 2 0 9 11 6 8 1 0 8 17 14 13 28 23 8 1 0 7 2 1 11 2 1 8 1 0 17 5 0 13 3 0 19 3 0 19 21 14 11 1 0 16 1 0 6 chain 15294 chr12 133851895 + 86279172 86279527 L1MA4 2864 - 55 365 140504 16 0 1 19 12 10 25 6 0 11 71 34 22 3 0 38 25 26 32 0 1 75 chain 8853 chr12 133851895 + 86281413 86281646 MER47A 366 + 77 312 166364 43 37 36 48 4 5 20 37 44 6 5 0 33 chain 29841 chr12 133851895 + 86282685 86282998 AluYb8 318 + 0 313 85309 313 chain 197219 chr12 133851895 + 86297744 86301613 L1PB1 5432 - 8 5395 19409 4 1 0 14 0 2 14 1 0 20 1 0 13 7 0 6 0 5 14 8 5 19 25 12 9 0 1 6 1 0 43 1 0 15 3 2 53 2 0 9 16 11 33 13 0 8 40 3 9 674 0 23 72 0 66 8 3 381 3 0 100 34 39 96 28 5 14 31 1 65 0 7 9 8 1 65 5 0 170 86 12 80 4 5 220 3 5 83 9 0 458 1 2 230 30 2522 24 0 3 6 3 0 308 14 4 50 chain 7674 chr12 133851895 + 86298183 86298276 L1PB1 5432 - 377 470 173078 93 chain 12445 chr12 133851895 + 86298448 86298728 L1PB1 5432 - 12 262 150482 15 2 1 13 1 0 21 1 0 24 2 0 14 8 5 14 30 17 13 7 6 40 1 0 16 2 1 38 6 0 12 chain 88642 chr12 133851895 + 86302584 86303784 L1PA8 5853 + 4700 5852 40129 387 1 0 248 8 4 102 0 6 10 40 2 103 1 0 46 2 0 14 1 3 57 1 0 6 1 0 54 1 0 18 2 1 35 6 0 56 chain 24628 chr12 133851895 + 86306975 86307262 AluSp 311 + 8 298 106839 83 0 3 204 chain 14104 chr12 133851895 + 86307262 86307489 L1M1 2793 + 1533 1752 144202 56 9 11 67 1 0 5 7 0 72 2 0 8 chain 4339 chr12 133851895 + 86307531 86307587 MER4D 903 + 837 895 202725 41 0 2 15 chain 38752 chr12 133851895 + 86319161 86319617 LTR2 463 + 2 463 71074 59 1 5 302 0 1 94 chain 191138 chr12 133851895 + 86331235 86333668 HERVL-int 5654 + 0 5649 19946 44 1 0 4 0 1 134 1 0 4 0 1 172 13 2719 315 12 13 47 7 23 1304 0 488 163 0 5 212 chain 47060 chr12 133851895 + 86360291 86360834 L1PA4 6152 + 5604 6151 61154 294 1 0 16 0 4 60 1 2 171 chain 29322 chr12 133851895 + 86380903 86381214 AluYa5 310 - 0 310 87428 184 1 0 126 chain 28429 chr12 133851895 + 86390778 86391139 THE1B 368 - 8 368 91468 191 1 0 169 chain 4046 chr12 133851895 + 86408981 86409031 MADE1 96 - 2 91 206693 29 0 39 21 chain 69791 chr12 133851895 + 86413349 86414124 L1PA4 6152 - 1381 2156 48447 775 chain 126191 chr12 133851895 + 86414124 86415527 L1PA4 6152 + 4750 6152 29038 499 1 0 903 chain 435061 chr12 133851895 + 86428361 86434490 L1PA7 6471 - 3 6059 9193 152 2 0 6 8 10 213 0 1 172 14 21 115 21 13 148 0 3 507 0 1 263 6 268 235 2 19 83 0 1 101 10 10 55 0 1 13 0 3 241 0 4 972 452 0 149 48 56 111 0 2 74 0 2 204 2 1 5 0 1 94 0 1 25 1 14 63 1 0 409 1 0 572 6 0 151 14 14 137 1 0 165 18 88 87 chain 29032 chr12 133851895 + 86431706 86432134 LTR14B 630 - 1 620 88843 65 24 27 119 8 18 98 0 28 49 0 1 20 0 149 45 chain 21687 chr12 133851895 + 86436400 86436669 AluY 311 + 39 306 121438 84 3 0 9 0 1 173 chain 56374 chr12 133851895 + 86450018 86450692 L1PA6 6164 - 3 681 54919 157 3 4 446 0 3 68 chain 512362 chr12 133851895 + 86454848 86461492 L1PA7 6471 + 8 6467 5937 106 0 1 205 1 2 90 14 0 477 0 1 4 10 9 698 0 3 19 2 4 94 16 16 199 15 14 191 0 1 390 26 0 106 1 2 139 3 4 374 164 0 174 7 8 51 1 0 94 1 2 63 7 11 52 1 0 481 0 2 392 0 1 711 1 0 197 0 1 225 6 8 501 0 1 335 chain 22221 chr12 133851895 + 86467426 86467722 THE1A-int 1579 + 1285 1579 119259 30 4 3 52 5 4 205 chain 3444 chr12 133851895 + 86468075 86468113 MLT2A1 477 + 343 381 216301 38 chain 28080 chr12 133851895 + 86470274 86470628 THE1A 353 - 0 353 92711 12 0 1 138 1 0 91 1 0 111 chain 135298 chr12 133851895 + 86470977 86472665 HERVL-int 5654 - 0 1683 26955 325 19 0 100 4 5 329 0 1 211 0 3 175 0 8 386 0 1 139 chain 34996 chr12 133851895 + 86478947 86479362 L1PA7 6471 - 965 1388 76193 294 0 1 87 0 7 34 chain 9484 chr12 133851895 + 86479362 86479478 L1PA7 6471 + 5505 5621 161536 116 chain 5925 chr12 133851895 + 86479479 86479568 L1PA7 6471 + 5621 5708 185939 74 0 2 5 4 0 6 chain 61007 chr12 133851895 + 86479575 86480321 L1PA7 6471 + 5717 6465 52330 419 0 1 107 0 2 59 5 6 113 1 2 31 3 0 8 chain 16939 chr12 133851895 + 86486635 86486840 L1PA7 6471 - 1 206 135752 205 chain 3038 chr12 133851895 + 86488773 86488805 MLT1J 494 + 21 53 224232 32 chain 4135 chr12 133851895 + 86493202 86493252 L1PA7 6471 - 2 52 205424 50 chain 127762 chr12 133851895 + 86514063 86515578 L1P2 5180 + 507 2045 28628 8 1 0 272 1 0 5 1 0 141 0 25 198 0 3 87 2 1 715 1 0 83 chain 34883 chr12 133851895 + 86522872 86523325 LTR15 485 - 7 462 76363 21 0 1 14 2 0 5 1 0 158 0 4 100 0 2 22 0 2 23 4 0 18 0 1 17 1 0 67 chain 29569 chr12 133851895 + 86523326 86523636 AluYa5 310 - 0 310 86333 310 chain 22532 chr12 133851895 + 86534112 86534390 L1PA7 6471 + 6147 6414 117885 91 13 2 174 chain 3123 chr12 133851895 + 86534397 86534441 L1PA7 6471 + 6425 6469 222499 44 chain 20926 chr12 133851895 + 86547281 86547668 THE1D 372 + 0 372 124194 52 34 5 15 19 30 63 20 22 5 0 1 39 1 0 98 8 9 33 chain 123078 chr12 133851895 + 86573144 86574711 THE1A-int 1579 + 0 1567 30018 18 7 9 150 0 6 15 0 4 57 14 0 136 0 1 280 0 1 301 12 13 52 2 0 373 0 1 150 chain 24430 chr12 133851895 + 86574722 86575077 THE1A 353 + 0 353 107914 110 1 0 47 26 25 4 0 1 11 1 0 155 chain 5454 chr12 133851895 + 86584667 86584789 MLT2C2 476 + 201 279 190487 52 17 0 4 27 0 22 chain 19936 chr12 133851895 + 86585592 86585821 L1PA5 6144 + 5704 5933 127341 229 chain 18486 chr12 133851895 + 86585821 86586028 L1PA5 6144 + 5934 6141 131542 207 chain 14461 chr12 133851895 + 86601065 86601279 L1PA8 5853 - 0 211 143012 92 2 1 19 2 1 39 9 8 51 chain 27981 chr12 133851895 + 86606384 86606698 AluYa5 310 + 0 310 93064 123 7 3 184 chain 18102 chr12 133851895 + 86633623 86633816 L1HS 6032 + 5838 6031 132595 193 chain 9970 chr12 133851895 + 86655705 86655832 MER85 139 - 0 137 160726 40 0 10 87 chain 105258 chr12 133851895 + 86681136 86682423 L1PA7 6471 - 1 1298 35438 33 1 2 109 13 7 7 0 5 188 9 16 479 0 3 271 1 0 26 0 1 150 chain 15635 chr12 133851895 + 86687428 86687730 THE1D 372 + 0 324 139479 69 25 47 68 4 0 9 14 18 11 4 0 6 1 5 21 14 14 56 chain 127390 chr12 133851895 + 86689096 86690735 LTR12C 1709 - 7 1709 28722 52 0 131 291 0 4 107 9 6 259 78 0 15 1 0 358 14 15 4 1 0 210 0 10 240 chain 3641 chr12 133851895 + 86689814 86689857 LTR12C 1709 - 1016 1059 144071 43 chain 2746 chr12 133851895 + 86689857 86689890 LTR12C 1709 - 781 814 179400 33 chain 62484 chr12 133851895 + 86715446 86716157 L1PA5 6144 + 5429 6144 51686 700 0 4 11 chain 65872 chr12 133851895 + 86739054 86739789 L1PA4 6152 - 0 757 50157 373 1 23 361 chain 21606 chr12 133851895 + 86746563 86746805 L1PA4 6152 + 5909 6151 121749 242 chain 6609 chr12 133851895 + 86748850 86748937 LTR12 884 - 522 608 180387 49 1 0 37 chain 515307 chr12 133851895 + 86750133 86756272 L1PA5 6144 + 0 6141 5635 135 62 76 62 1 0 747 0 1 7 1 2 4 1 0 135 9 0 757 3 5 386 0 1 707 0 1 131 5 1 232 0 1 285 5 0 951 0 1 621 0 1 568 1 0 323 chain 13812 chr12 133851895 + 86758168 86758341 L1P4 1494 - 287 460 145210 173 chain 91845 chr12 133851895 + 86758380 86759449 MER11C 1089 - 16 1089 39010 181 0 1 76 1 0 247 6 5 338 0 5 220 chain 40799 chr12 133851895 + 86760858 86761776 LTR19B 566 + 0 566 68177 111 0 4 107 0 1 18 0 1 54 7 0 37 0 4 103 356 0 10 6 7 109 chain 22577 chr12 133851895 + 86770838 86771125 AluSp 311 - 12 300 117684 119 5 6 163 chain 21790 chr12 133851895 + 86775496 86775814 THE1B 368 + 0 342 121064 44 0 15 103 1 0 31 3 0 8 29 42 99 chain 23186 chr12 133851895 + 86777365 86777667 THE1B-int 1605 + 1296 1600 114748 13 0 2 10 1 2 214 1 0 63 chain 8179 chr12 133851895 + 86803429 86803534 MSTA 426 + 0 104 170069 40 1 0 64 chain 85056 chr12 133851895 + 86803589 86804683 MER11A 1151 - 8 1151 41493 29 1 2 26 2 1 126 4 5 5 1 0 55 0 32 404 1 0 46 0 1 22 0 1 83 0 11 64 1 0 31 2 0 114 0 8 77 chain 115311 chr12 133851895 + 86835142 86836504 L1PA5 6144 - 16 1382 32677 316 0 1 202 9 11 52 6 7 320 1 2 5 1 0 450 chain 14620 chr12 133851895 + 86845990 86846172 L1PA5 6144 - 5 191 142523 136 1 4 4 0 1 41 chain 29192 chr12 133851895 + 86855010 86855321 AluYb8 318 - 7 318 88084 311 chain 38796 chr12 133851895 + 86867861 86868308 L1PA4 6152 + 5704 6152 71020 278 5 6 164 chain 42239 chr12 133851895 + 86869955 86870760 L1PA16 3655 + 2832 3619 66350 70 1 0 26 9 12 109 25 34 121 1 0 37 2 0 18 11 13 14 22 20 185 1 0 4 9 11 24 88 66 7 5 0 16 chain 27350 chr12 133851895 + 86871380 86871686 L1PA5 6144 - 6 312 95112 306 chain 360892 chr12 133851895 + 86883556 86887584 L1PA3long 6157 + 1348 6157 11344 896 0 12 70 1 0 339 0 769 1321 0 1 160 1 0 317 0 1 760 6 6 157 chain 179551 chr12 133851895 + 86902082 86904055 L1PA3long 6157 - 245 2217 21024 671 1 0 1301 chain 91312 chr12 133851895 + 86904055 86905113 L1P2 5180 + 1930 2989 39192 984 0 1 74 chain 51339 chr12 133851895 + 86930567 86931147 L1PA4 6152 + 5563 6140 58075 281 3 0 296 chain 100361 chr12 133851895 + 86932799 86933962 L1PA5 6144 - 1 1163 36667 8 5 0 367 0 1 285 0 3 185 2 0 35 6 8 270 chain 32343 chr12 133851895 + 86959915 86960346 MLT2A1 477 + 0 429 80283 171 12 8 24 0 1 8 7 6 165 0 2 44 chain 201648 chr12 133851895 + 86979731 86981979 L1PA3long 6157 - 2 2254 19095 855 1 0 625 4 7 169 0 2 594 chain 146109 chr12 133851895 + 86981979 86983599 L1PA3long 6157 + 2292 3912 25115 398 0 1 1042 1 0 179 chain 3938 chr12 133851895 + 86991878 86991933 Tigger3a 397 + 142 201 208304 34 1 5 20 chain 17025 chr12 133851895 + 87004365 87004565 L1PA4 6152 - 0 195 135524 153 5 0 42 chain 3345 chr12 133851895 + 87012087 87012137 L1MA4A 3247 + 3066 3114 218141 21 1 0 20 1 0 7 chain 506822 chr12 133851895 + 87020526 87026690 L1PA6 6164 + 0 6161 6412 315 91 9 8 0 81 94 4 3 47 0 1 124 0 1 59 0 1 702 1 0 174 0 1 526 0 1 85 9 0 101 1 2 88 0 1 77 0 1 682 6 8 502 0 1 368 2 1 1727 0 1 5 2 0 364 chain 12497 chr12 133851895 + 87029758 87029906 Tigger3a 397 + 141 289 150258 148 chain 56947 chr12 133851895 + 87034203 87034844 L1P1 4361 - 1041 1682 54563 641 chain 41725 chr12 133851895 + 87034844 87035306 L1PA3long 6157 + 5695 6157 66994 462 chain 3160 chr12 133851895 + 87064702 87064742 MER75 514 + 131 171 221741 40 chain 80586 chr12 133851895 + 87072208 87073094 L1PA3long 6157 - 0 890 43349 841 0 4 45 chain 434174 chr12 133851895 + 87077950 87083926 L1PA8 5853 - 143 5803 9210 21 3 2 10 1 0 46 0 1 20 2 0 48 1 0 455 0 3 8 9 2 83 1 0 581 4 9 385 327 0 97 0 21 75 5 6 30 5 6 134 0 1 381 0 1 68 1 0 3 8 0 225 4 11 492 0 4 386 0 4 65 16 0 405 0 1 474 0 4 286 0 1 73 0 3 15 0 29 426 7 11 190 65 25 11 2 0 22 chain 26766 chr12 133851895 + 87100571 87100925 THE1B 368 + 0 366 97104 44 0 15 110 8 7 18 2 0 172 chain 25306 chr12 133851895 + 87102836 87103169 THE1B 368 + 9 368 103191 35 4 29 126 1 2 167 chain 18243 chr12 133851895 + 87104324 87104598 L1PB2 3958 + 3568 3838 132227 22 1 2 22 9 6 56 6 5 73 2 0 21 1 0 7 0 2 54 chain 8065 chr12 133851895 + 87134789 87134896 L1PA16 3655 - 68 172 170670 10 3 0 94 chain 33713 chr12 133851895 + 87146886 87147364 MER9a1 513 + 12 513 78072 187 57 79 211 6 7 17 chain 27581 chr12 133851895 + 87150804 87151141 L1PA7 6471 + 6122 6458 94403 15 2 1 320 chain 550038 chr12 133851895 + 87157658 87163799 L1PA3long 6157 + 6 6157 1442 145 3 4 1797 1 0 1314 0 4 201 0 1 86 2 0 1768 6 7 159 0 3 509 3 6 147 chain 5061 chr12 133851895 + 87166494 87166681 MLT1B-int 1170 + 911 1092 194529 21 63 65 17 20 17 46 9 4 11 chain 10873 chr12 133851895 + 87174875 87175131 L1PB4 2604 - 295 553 156684 25 42 41 115 43 44 12 2 4 17 chain 27953 chr12 133851895 + 87175948 87176255 AluYa5 310 - 1 308 93156 307 chain 173046 chr12 133851895 + 87196321 87198206 L1PA2 6032 + 4147 6032 21703 1885 chain 23533 chr12 133851895 + 87200492 87200774 L1PA5 6144 + 5843 6125 112942 154 1 0 18 0 1 109 chain 49736 chr12 133851895 + 87238080 87238623 L1PA3long 6157 + 2632 3176 59205 326 0 1 217 chain 270695 chr12 133851895 + 87238623 87241600 L1PA3long 6157 + 3177 6155 15152 1622 0 1 1355 chain 26498 chr12 133851895 + 87250526 87250862 L1PA6 6164 - 2 329 98047 4 1 0 140 9 2 108 1 0 73 chain 203509 chr12 133851895 + 87251558 87253829 L1PA3long 6157 - 0 2271 18959 605 5 6 238 2 1 1421 chain 29265 chr12 133851895 + 87273769 87274077 AluYa5 310 - 2 310 87720 308 chain 18684 chr12 133851895 + 87306861 87307238 THE1D 372 + 0 343 130987 75 19 0 48 6 0 4 8 0 4 2 0 37 78 79 96 chain 12067 chr12 133851895 + 87311258 87311393 L1PA4 6152 - 3407 3542 151912 135 chain 291957 chr12 133851895 + 87311393 87314777 L1PA4 6152 + 2744 6139 13908 433 1 2 203 1 0 19 6 9 475 0 1 8 0 1 456 0 4 744 0 1 850 0 1 188 chain 39320 chr12 133851895 + 87332458 87332909 LTR7 482 + 0 482 70298 237 1 32 213 chain 320295 chr12 133851895 + 87332911 87336829 HERVH-int 3825 + 0 3824 12586 168 0 2 360 65 1 14 0 71 15 3 0 7 21 0 19 24 0 22 44 0 41 21 0 9 2 1 49 1 0 130 1 0 320 16 1 455 4 31 534 0 1 1573 chain 36404 chr12 133851895 + 87338091 87338519 LTR7 482 + 0 469 74365 45 2 12 181 0 31 200 chain 42126 chr12 133851895 + 87362646 87363126 L1PA5 6144 - 2 476 66474 7 4 0 461 2 0 6 chain 525144 chr12 133851895 + 87364172 87370291 L1PA4 6152 + 2 6152 4672 521 3 4 117 0 1 231 1 0 368 10 2 650 4 0 71 1 5 1313 2 1 217 4 5 946 0 1 210 0 25 49 0 5 336 0 1 480 1 2 128 0 4 79 0 1 377 chain 11014 chr12 133851895 + 87378751 87379046 L1PB1 5432 + 5114 5390 156144 24 27 21 9 2 0 17 3 0 35 2 1 11 5 4 45 1 0 15 1 0 4 2 0 11 9 0 9 2 12 14 27 24 20 chain 22990 chr12 133851895 + 87391444 87391795 THE1B 368 - 0 368 115672 75 1 0 110 19 17 24 0 4 17 12 13 44 5 20 44 chain 33929 chr12 133851895 + 87394629 87395106 MER4-int 2692 + 15 487 77731 21 2 0 4 0 1 58 2 0 16 9 8 190 9 5 104 0 3 62 chain 20284 chr12 133851895 + 87411453 87411671 L1PA4 6152 - 6 224 126272 218 chain 5804 chr12 133851895 + 87446731 87446859 L1MC1 2226 + 1989 2103 187097 6 2 0 15 0 1 36 27 19 17 5 0 20 chain 31696 chr12 133851895 + 87468666 87469123 LTR3B_ 500 + 0 457 81331 78 1 0 72 0 1 4 14 9 134 4 5 39 7 9 51 8 10 45 chain 77782 chr12 133851895 + 87470020 87470885 L1PA3long 6157 - 1519 2389 44396 280 0 4 17 0 1 568 chain 139611 chr12 133851895 + 87470885 87472415 L1PA3long 6157 + 4628 6157 26200 1269 1 0 260 chain 26177 chr12 133851895 + 87477366 87477709 THE1B-int 1605 + 1239 1592 99292 63 0 13 257 3 0 20 chain 21238 chr12 133851895 + 87477721 87478087 THE1B 368 + 0 368 123062 44 10 39 7 14 0 17 3 4 61 11 10 18 14 0 17 1 3 73 1 0 75 chain 539068 chr12 133851895 + 87492184 87498212 L1PA3long 6157 + 4 6156 2976 148 0 1 623 0 128 1342 0 1 2002 1 2 685 14 7 1213 chain 399255 chr12 133851895 + 87539395 87544891 L1PB1 5432 - 8 5413 10127 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 20 3 0 17 36 24 5 1 0 34 1 0 9 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 4 1 8 1 2 288 3 4 181 4 0 356 11 0 104 1 0 201 0 1 57 10 12 75 0 4 30 0 1 50 48 18 548 0 1 189 0 8 49 0 1 36 6 9 142 2 1 238 2 0 4 8 0 79 8 1 222 0 1 300 6 8 482 18 0 7 1 0 510 1 0 4 0 1 36 2 0 480 0 1 307 7 10 27 chain 21166 chr12 133851895 + 87556008 87556439 L1PB2 3958 - 120 537 123324 31 4 5 27 2 1 21 2 0 68 14 9 36 1 2 15 7 6 102 83 76 18 chain 483959 chr12 133851895 + 87565184 87571339 L1PA5 6144 + 0 6136 7589 135 0 14 65 1 0 35 54 41 659 25 0 216 17 8 499 0 1 36 1 0 376 7 8 12 1 2 383 8 10 175 0 1 54 18 6 319 0 5 104 2 0 202 6 5 503 1 2 5 1 0 84 1 0 10 9 12 156 0 4 96 9 12 83 3 7 105 0 3 236 0 7 114 3 4 480 1 0 125 0 1 569 0 1 117 5 0 29 chain 237178 chr12 133851895 + 87585555 87588111 L1PA2 6032 + 3476 6031 16923 2542 1 0 13 chain 3879 chr12 133851895 + 87609665 87609712 MER53 195 + 15 62 209177 47 chain 40574 chr12 133851895 + 87678501 87679016 MER9a2 513 - 4 513 68474 55 29 10 142 0 1 258 1 2 6 0 11 24 chain 90943 chr12 133851895 + 87687927 87688950 L1PA3long 6157 - 0 1020 39312 15 6 2 242 0 1 760 chain 83395 chr12 133851895 + 87688950 87689871 L1PA3long 6157 + 4224 5145 42088 921 chain 23973 chr12 133851895 + 87715601 87715980 THE1D 372 - 0 372 110489 148 7 6 25 5 7 29 1 0 71 19 20 11 9 0 26 1 0 12 0 2 15 chain 4980 chr12 133851895 + 87723009 87723094 MER20 218 - 78 169 195357 43 16 22 26 chain 64318 chr12 133851895 + 87723809 87724561 LTR12C 1709 + 0 1700 50877 503 1 949 248 chain 5382 chr12 133851895 + 87731402 87731461 L1PA3long 6157 + 6098 6157 191179 59 chain 394909 chr12 133851895 + 87751559 87756628 L1PA8A 6298 - 8 5160 10282 398 1 0 4 17 9 34 0 14 77 1 2 242 1 2 14 22 22 59 1 0 5 0 2 71 7 17 840 0 2 120 0 1 136 0 1 111 0 1 64 0 2 461 2 1 46 0 1 82 3 0 9 0 1 304 0 76 87 5 6 231 1 0 229 11 0 166 5 21 170 8 5 130 8 9 14 0 1 166 39 0 58 1 4 33 7 22 333 2 3 233 chain 526027 chr12 133851895 + 87787728 87793832 L1PA5 6144 + 3 6138 4584 720 1 2 157 0 17 266 0 1 248 1 6 478 1 0 41 1 0 1224 0 1 1258 0 1 4 1 0 947 5 6 6 0 3 255 5 6 123 1 3 218 0 1 143 chain 45655 chr12 133851895 + 87803858 87804473 PABL_A 660 - 17 656 62350 458 6 5 4 0 1 79 11 20 41 1 16 15 chain 440539 chr12 133851895 + 87808958 87814431 L1PA7 6471 - 4 5513 9040 163 0 1 166 68 68 314 1 0 52 1 0 86 0 3 637 0 2 411 0 19 715 0 1 339 1 0 4 2 3 593 0 4 64 0 1 187 1 3 467 0 1 52 0 2 7 8 4 214 0 1 78 0 1 23 0 1 524 0 3 295 chain 39713 chr12 133851895 + 87814836 87816030 LTR12F 595 - 0 595 69740 380 5 69 18 659 1 23 6 1 103 chain 8088 chr12 133851895 + 87815239 87815330 LTR12F 595 - 504 595 170556 91 chain 5102 chr12 133851895 + 87823022 87823084 MER57B1 401 + 0 62 194065 62 chain 51683 chr12 133851895 + 87823111 87823825 LTR17 781 - 71 781 57832 32 1 2 349 1 0 72 5 4 15 1 0 43 28 27 5 1 0 161 chain 54123 chr12 133851895 + 87825739 87826804 MER4E 760 - 17 760 56278 74 0 1 97 327 0 275 9 4 5 0 1 30 0 5 75 24 27 74 2 1 56 0 1 17 chain 30788 chr12 133851895 + 87836700 87837205 MER41C 542 - 29 542 82883 83 0 1 26 1 5 56 8 31 129 15 15 59 62 41 17 0 1 49 chain 34084 chr12 133851895 + 87842591 87842988 L1P1 4361 - 112 515 77491 53 0 6 42 1 0 279 1 2 21 chain 84165 chr12 133851895 + 87849190 87850280 MER11A 1151 - 8 1151 41834 58 1 0 72 18 19 78 1 36 12 8 6 450 0 1 22 0 1 60 0 2 21 0 11 66 1 0 29 2 0 114 0 8 77 chain 64363 chr12 133851895 + 87920655 87921416 L1PA7 6471 + 5647 6437 50857 496 0 29 265 chain 506463 chr12 133851895 + 87924763 87930861 L1PA5 6144 + 0 6144 6437 119 1 15 260 0 4 39 0 6 257 1 2 45 0 9 169 6 7 38 0 14 150 4 1 28 15 6 110 0 1 532 5 6 376 0 2 19 0 2 204 0 3 15 0 1 263 2 1 233 2 1 129 2 1 102 1 0 1432 3 0 364 0 1 129 1 7 788 2 1 252 chain 364193 chr12 133851895 + 87937304 87941386 L1PA3long 6157 + 2056 6155 11252 633 0 1 236 2 0 1598 1 18 1282 0 1 330 chain 24488 chr12 133851895 + 87941986 87942265 L1PA4 6152 + 5868 6152 107612 273 0 5 6 chain 416582 chr12 133851895 + 87950814 87956149 L1PA8 5853 + 549 5853 9619 47 0 4 33 9 10 103 1 2 30 0 1 370 0 1 4 7 6 254 1 2 203 0 1 286 0 2 108 5 2 253 0 4 163 0 9 506 0 1 62 0 1 131 11 12 54 9 0 183 3 0 356 0 1 50 2 0 54 0 1 4 2 1 177 3 0 9 0 3 136 0 2 24 1 0 454 0 1 82 38 0 3 3 0 252 0 2 75 0 2 471 6 5 47 2 0 68 3 2 13 1 0 48 2 1 19 1 0 93 chain 55155 chr12 133851895 + 87956692 87957328 L1PA5 6144 - 9 652 55612 233 5 12 398 chain 19855 chr12 133851895 + 87957335 87957571 L1PA5 6144 + 5139 5379 127637 143 1 0 12 0 5 80 chain 75034 chr12 133851895 + 87972579 87973453 MER11D 897 - 0 897 46002 287 1 24 586 chain 137092 chr12 133851895 + 87976075 87977570 L1PA2 6032 - 0 1495 26623 20 1 0 1411 0 1 63 chain 72423 chr12 133851895 + 87977571 87978362 L1PA2 6032 + 3737 4535 47292 383 0 3 102 0 4 306 chain 180342 chr12 133851895 + 87984349 87986376 L1HS 6032 - 2289 4306 20962 1345 10 0 672 chain 109227 chr12 133851895 + 87986376 87987599 L1PA3long 6157 + 4932 6157 34344 1069 0 2 154 chain 170716 chr12 133851895 + 88023391 88025286 L1PA3long 6157 - 0 1898 21966 9 1 0 418 0 2 315 0 1 521 0 1 631 chain 205183 chr12 133851895 + 88025288 88027564 L1PA3long 6157 + 1989 4264 18843 1199 0 1 506 1 0 189 2 1 379 chain 7647 chr12 133851895 + 88040007 88040342 MER31B 477 - 9 368 173250 67 81 98 12 22 27 17 80 67 12 7 22 37 chain 3759 chr12 133851895 + 88052506 88052573 MSTB-int 1649 + 0 68 210974 14 12 13 41 chain 9847 chr12 133851895 + 88052741 88052878 MSTA 426 + 274 426 161353 25 4 19 108 chain 71077 chr12 133851895 + 88074004 88074776 L1PA3long 6157 - 1 773 47639 772 chain 244095 chr12 133851895 + 88074776 88077466 L1PA3long 6157 + 2691 5382 16556 930 0 1 1760 chain 25693 chr12 133851895 + 88083939 88084288 THE1A 353 - 0 353 101315 56 0 2 101 12 15 69 3 2 108 chain 25664 chr12 133851895 + 88089308 88089650 L1PA6 6164 - 2 332 101430 6 7 0 124 0 1 20 0 1 140 7 0 38 chain 358814 chr12 133851895 + 88090157 88094398 L1PA4 6152 - 118 4384 11382 250 0 1 319 8 0 163 1 0 276 0 1 456 0 1 876 0 1 404 1 0 885 0 24 56 2 1 474 0 5 52 7 10 11 chain 157466 chr12 133851895 + 88098617 88100588 L1PA7 6471 + 4482 6459 23667 15 0 8 118 1 6 40 1 9 224 0 1 118 18 0 550 0 1 48 2 1 81 2 0 6 2 4 229 0 1 188 0 1 328 chain 33910 chr12 133851895 + 88103727 88104104 L1PA3long 6157 - 0 377 77756 377 chain 43318 chr12 133851895 + 88104104 88104585 L1PA3long 6157 + 5291 5773 65018 94 0 1 387 chain 61820 chr12 133851895 + 88128259 88129029 L1P3 4156 - 503 1278 51984 77 1 3 90 2 1 104 0 3 37 0 1 459 chain 174689 chr12 133851895 + 88141340 88143199 L1HS 6032 - 3 1862 21515 1859 chain 66359 chr12 133851895 + 88143199 88143908 L1HS 6032 + 3446 4155 49846 709 chain 163944 chr12 133851895 + 88144247 88146045 L1PA3long 6157 - 15 1813 22814 1798 chain 37421 chr12 133851895 + 88146045 88146454 L1PA3long 6157 + 3906 4316 72939 40 0 1 369 chain 30853 chr12 133851895 + 88199952 88200386 MLT2A1 477 - 0 477 82767 32 0 42 160 8 3 67 7 11 19 1 2 101 0 1 39 chain 132506 chr12 133851895 + 88231521 88233183 L1PA7 6471 + 4829 6467 27524 69 0 1 50 5 0 305 0 1 281 0 1 165 4 1 306 1 2 191 0 1 220 18 1 37 4 0 6 chain 164619 chr12 133851895 + 88268810 88270784 L1PA7 6471 + 4487 6470 22723 187 0 2 947 0 1 76 0 2 107 0 3 198 19 20 440 chain 65706 chr12 133851895 + 88282127 88282872 L1PA4 6152 - 2 747 50243 166 0 1 4 1 0 87 1 0 79 0 1 407 chain 25178 chr12 133851895 + 88290002 88290360 THE1B 368 + 0 368 103857 44 0 15 72 1 2 39 10 9 13 4 0 100 1 0 74 chain 27612 chr12 133851895 + 88301071 88301462 LTR7 482 - 5 482 94318 93 0 2 15 1 2 55 3 4 10 0 31 40 0 1 109 14 64 51 chain 288464 chr12 133851895 + 88302663 88306263 HERVH-int 3825 - 0 3825 14125 382 40 41 103 0 1 214 1 0 46 0 11 725 1 2 5 1 0 14 0 2 42 1 0 233 0 4 179 0 1 40 0 1 126 0 4 373 0 10 40 15 0 46 16 9 390 1 4 20 0 1 3 0 208 10 1 0 43 21 25 87 15 16 31 1 0 287 1 0 46 chain 30067 chr12 133851895 + 88306273 88306677 LTR7 482 - 7 482 84611 167 0 1 46 5 37 109 9 47 9 2 0 8 0 2 49 chain 143112 chr12 133851895 + 88306946 88308508 L1PA2 6032 - 11 1573 25637 781 0 1 477 1 0 303 chain 19271 chr12 133851895 + 88309133 88309483 THE1B 368 + 0 358 129315 19 2 0 27 18 24 99 1 0 11 27 34 11 21 19 114 chain 20666 chr12 133851895 + 88321132 88321474 THE1B 368 - 0 357 125083 124 36 46 29 1 0 92 21 27 39 chain 11694 chr12 133851895 + 88328564 88328972 L1MA6 2487 + 2108 2400 153504 101 9 0 18 220 116 35 3 0 22 chain 23414 chr12 133851895 + 88329942 88330323 THE1D-int 1627 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20 4 3 11 chain 26614 chr12 133851895 + 88410915 88411287 THE1B 368 + 16 368 97617 33 1 0 5 0 1 117 4 3 17 2 0 160 17 0 16 chain 26468 chr12 133851895 + 88423880 88424232 THE1A 353 - 0 353 98175 40 1 3 197 8 7 106 chain 120747 chr12 133851895 + 88424232 88425819 THE1A-int 1579 - 0 1579 30780 218 24 28 150 6 7 191 1 2 165 6 5 355 0 1 78 29 18 23 9 4 196 0 1 23 0 1 113 chain 5029 chr12 133851895 + 88472226 88472399 L1MC1 2226 + 1998 2140 194840 49 43 30 6 5 0 15 12 10 13 1 0 8 9 0 7 1 0 4 chain 23844 chr12 133851895 + 88490977 88491352 THE1C 375 + 0 375 111225 120 19 23 37 0 3 14 23 17 39 6 5 117 chain 7908 chr12 133851895 + 88539234 88539686 MER4C 627 - 0 627 171591 62 72 70 32 186 361 13 0 1 7 1 0 13 1 0 4 43 46 18 chain 253071 chr12 133851895 + 88573854 88577053 HERVK22-int 3844 - 0 3843 16078 78 17 16 88 0 653 41 7 7 743 1 2 219 0 2 306 2 0 8 0 2 60 0 1 35 11 15 1431 16 0 136 chain 13901 chr12 133851895 + 88597724 88597997 THE1B 368 + 84 368 144912 72 69 85 6 7 0 38 1 3 80 chain 116932 chr12 133851895 + 88597997 88599562 THE1B-int 1605 + 0 1595 32148 113 0 3 300 24 49 117 0 2 71 23 21 264 0 2 185 22 22 446 chain 22895 chr12 133851895 + 88599571 88599914 THE1B 368 + 0 368 116131 44 0 15 139 35 45 25 1 0 4 0 1 95 chain 158306 chr12 133851895 + 88603733 88605674 HERVL-int 5654 - 3692 5654 23554 351 0 2 669 0 1 64 0 5 45 7 19 158 0 1 647 chain 34935 chr12 133851895 + 88605674 88606171 MLT2A1 477 - 0 477 76287 63 1 0 12 18 0 10 4 0 6 3 1 211 1 5 26 0 1 142 chain 185732 chr12 133851895 + 88621808 88625323 HERVH48-int 3304 + 117 3244 20441 9 2 0 7 7 3 7 2 0 14 42 31 11 2 0 27 1 0 31 13 0 9 35 26 4 1 0 66 6 2 8 2 1 31 2 1 36 1 0 17 0 1 6 18 5 82 1 0 7 3 1 54 32 2 10 20 0 3 1 0 17 4 0 17 1 0 4 3 1 65 2 0 73 1 0 70 25 17 117 4 1 11 1 0 21 1 0 12 2 0 33 3 0 3 2 0 22 2 0 4 1 0 16 1 0 22 2 0 22 1 0 18 2 0 6 1 0 5 10 4 69 0 1 52 1 0 12 1 0 8 1 0 218 1 0 89 2 1 73 1 2 91 0 1 110 0 1 10 1 0 236 20 19 11 2 0 68 1 0 11 2 1 47 1 0 93 10 12 124 1 0 4 1 0 18 1 0 41 8 6 11 4 2 23 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88742301 88743210 L1PA6 6164 + 3762 4670 43353 887 1 0 21 chain 25574 chr12 133851895 + 88752573 88752952 THE1C 375 + 0 375 101851 15 2 0 94 4 5 10 9 8 47 0 4 6 14 8 178 chain 7302 chr12 133851895 + 88762253 88762339 HERVH-int 3825 + 0 89 175434 56 0 3 30 chain 3091 chr12 133851895 + 88773243 88773280 MSTA 426 + 389 426 223080 37 chain 27530 chr12 133851895 + 88773664 88773966 AluYk4 311 - 10 311 94576 169 1 0 132 chain 51688 chr12 133851895 + 88795692 88796285 L1PA4 6152 - 4229 4825 57709 554 0 3 39 chain 377996 chr12 133851895 + 88796285 88800498 L1PA4 6152 + 1926 6143 10817 128 0 1 2164 0 1 1846 0 2 75 chain 22347 chr12 133851895 + 88803876 88804137 L1PA5 6144 - 0 263 118713 171 0 2 90 chain 6921 chr12 133851895 + 88824221 88824318 HY1 111 + 3 103 178020 38 0 2 39 4 5 16 chain 513052 chr12 133851895 + 88830453 88836909 L1PA7 6471 + 3 6469 5879 44 7 6 312 7 8 39 0 1 50 1 0 420 0 1 90 7 8 228 0 4 170 2 0 118 5 8 631 0 1 488 7 1 7 0 5 34 0 1 336 3 4 78 0 4 510 0 9 44 3 6 333 12 8 28 18 16 123 3 0 345 0 2 147 0 4 274 1 0 157 8 6 99 1 2 78 0 1 7 13 0 326 0 3 271 25 26 534 2 0 10 chain 5627 chr12 133851895 + 88840056 88840144 THE1B 368 - 0 87 188807 56 7 6 25 chain 298472 chr12 133851895 + 88854867 88858809 L1PA7 6471 - 10 3827 13506 103 0 1 28 0 1 58 0 3 59 1 2 150 0 1 200 72 0 152 15 9 73 1 0 311 42 10 22 0 1 55 0 1 214 7 17 160 1 0 227 16 0 587 0 7 10 0 45 456 0 1 7 1 0 4 5 6 618 106 26 68 0 11 113 chain 210121 chr12 133851895 + 88869659 88872158 L1PA7 6471 + 3952 6466 18491 629 0 3 10 0 1 68 0 8 652 3 11 86 4 5 196 6 0 515 0 1 250 1 0 79 chain 65198 chr12 133851895 + 88898118 88898907 L1PA5 6144 + 5212 6144 50473 224 1 0 212 8 0 38 9 161 297 chain 5540 chr12 133851895 + 88925829 88925917 MER2B 336 + 200 289 189661 50 9 10 29 chain 3089 chr12 133851895 + 88931465 88931499 Tigger4a 237 + 184 218 223124 34 chain 35775 chr12 133851895 + 88936899 88937336 L1PA6 6164 - 8 442 75171 384 3 0 50 chain 5758 chr12 133851895 + 88952757 88952834 L1PB1 5432 + 5346 5420 187568 24 1 0 21 1 0 13 1 0 16 chain 6465 chr12 133851895 + 88975482 88975560 U1 164 + 68 151 181512 61 0 5 17 chain 25249 chr12 133851895 + 88982777 88983184 L1PB2 3958 + 3412 3838 103481 27 2 0 12 1 0 94 2 0 21 11 13 12 1 4 22 1 0 62 1 0 35 17 39 21 2 1 63 chain 47410 chr12 133851895 + 88986676 88987195 L1PA4 6152 - 9 530 60895 62 0 2 457 chain 26582 chr12 133851895 + 88991500 88991854 THE1A 353 + 0 353 97718 109 2 1 75 0 3 26 3 0 139 chain 5059 chr12 133851895 + 88996461 88996553 MLT1A0 366 + 37 131 194549 45 21 23 26 chain 88141 chr12 133851895 + 88996580 88997694 L1PA5 6144 - 0 1035 40321 124 2 0 492 0 1 329 78 0 89 chain 325436 chr12 133851895 + 89000000 89004345 L1PA7 6471 + 2205 6467 12372 232 0 1 5 9 8 181 16 0 798 0 3 90 1 0 17 0 1 141 3 4 239 0 1 30 0 240 158 0 4 361 11 10 42 0 1 26 0 1 156 2 0 666 4 0 18 319 7 37 0 4 23 1 0 216 0 1 26 0 1 116 0 1 206 1 0 184 4 0 6 chain 5299 chr12 133851895 + 89015447 89015505 L1PA2 6032 - 1128 1186 189341 58 chain 104643 chr12 133851895 + 89015505 89016637 L1PA2 6032 + 4898 6030 35580 1132 chain 530000 chr12 133851895 + 89060933 89067381 L1PA7 6471 + 0 6469 4188 5 0 1 50 2 0 279 0 2 75 1 0 995 8 11 86 0 3 449 8 10 69 1 0 838 0 1 114 0 1 308 4 5 26 0 1 174 1 0 78 2 0 116 0 1 56 1 2 396 7 8 194 0 4 361 11 10 69 0 1 156 2 1 646 0 1 11 0 3 92 0 1 318 0 2 439 chain 19668 chr12 133851895 + 89088314 89088651 THE1C 375 - 23 375 128204 110 50 63 79 16 17 48 0 1 34 chain 549112 chr12 133851895 + 89102634 89108655 L1PA2 6032 - 3 6025 1565 1233 0 1 2137 0 4 2173 1 2 109 5 0 363 chain 28851 chr12 133851895 + 89194178 89194552 THE1C 375 - 0 375 89665 25 1 0 165 1 2 11 0 1 171 chain 27948 chr12 133851895 + 89203298 89203616 L1PA7 6471 + 5229 5548 93174 241 0 1 77 chain 74533 chr12 133851895 + 89203617 89204528 L1PA7 6471 + 5548 6461 46246 74 3 0 77 0 3 429 0 1 176 2 3 150 chain 164341 chr12 133851895 + 89222513 89224476 L1PA5 6144 + 4170 6137 22764 174 0 4 449 0 5 3 5 0 815 0 1 4 2 1 511 chain 539730 chr12 133851895 + 89240769 89246777 L1PA3long 6157 + 0 6152 2860 152 0 1 102 0 1 225 1 2 293 0 128 1785 0 1 487 1 0 55 0 4 400 0 3 7 1 0 412 0 1 301 0 4 149 0 2 1637 chain 15191 chr12 133851895 + 89306244 89306430 L1PA5 6144 - 0 185 140800 23 1 0 162 chain 39972 chr12 133851895 + 89332631 89333070 L1PA3long 6157 - 15 456 69362 412 0 2 27 chain 90599 chr12 133851895 + 89333070 89334096 L1P1 4361 + 3304 4328 39431 846 1 0 155 2 0 5 0 1 17 chain 7759 chr12 133851895 + 89334951 89335126 L1PB1 5432 + 5267 5422 172549 13 1 0 16 27 16 14 3 1 5 1 0 14 2 0 24 1 0 22 3 2 10 1 0 18 chain 106692 chr12 133851895 + 89342783 89344050 L1PA6 6164 + 4862 6159 35066 360 0 5 176 0 4 27 5 0 303 0 2 201 0 24 195 chain 3991 chr12 133851895 + 89367133 89367183 L1MC5 759 - 466 516 207508 50 chain 13057 chr12 133851895 + 89443771 89443912 AluYb8 318 + 170 311 148007 141 chain 24961 chr12 133851895 + 89445671 89446051 THE1B 368 - 0 368 105000 176 7 1 18 1 0 66 25 5 47 2 17 38 chain 12121 chr12 133851895 + 89460461 89460615 L1PA7 6471 - 10 165 151730 141 1 2 12 chain 29374 chr12 133851895 + 89484345 89484716 THE1C-int 1605 + 0 440 87193 14 0 1 79 2 1 15 0 54 74 0 6 51 0 3 29 0 6 107 chain 14115 chr12 133851895 + 89493148 89493364 MER1B 344 - 5 241 144162 54 22 44 21 4 0 18 2 4 95 chain 10855 chr12 133851895 + 89505020 89505153 Tigger3a 397 + 143 277 156765 59 0 1 74 chain 13380 chr12 133851895 + 89531350 89531629 L1PB1 5432 + 5170 5423 146784 50 3 2 14 1 0 45 1 0 16 50 35 14 2 0 24 1 0 19 11 8 7 1 0 15 1 0 4 chain 166955 chr12 133851895 + 89541868 89543820 L1PA6 6164 + 4215 6162 22400 99 2 1 334 3 2 1502 3 0 9 chain 23311 chr12 133851895 + 89544242 89544554 L1PB3 3668 + 3097 3407 114151 56 1 0 4 0 1 133 1 0 97 4 3 16 chain 94704 chr12 133851895 + 89547581 89548649 L1PA3long 6157 - 0 1069 38165 430 0 1 638 chain 12042 chr12 133851895 + 89548911 89549066 Tigger1 2417 + 1121 1278 152023 17 0 1 81 0 1 57 chain 206595 chr12 133851895 + 89613843 89616611 L1PA8 5853 - 0 5803 18748 15 0 4 71 4 3 19 3 2 34 14 12 14 2 1 70 2 0 46 1 0 117 3 0 422 2 0 9 0 5 52 0 1 5 2 1 218 7 0 9 0 7 70 2 103 208 8 9 53 0 1 5 1 0 205 0 8 164 5 13 149 0 1 74 7 2969 262 5 0 113 4 8 68 0 1 117 73 33 11 2 0 21 chain 136486 chr12 133851895 + 89634230 89636255 L1MA2 4263 - 211 2200 26747 80 7 6 8 1 0 151 12 9 136 1 0 77 4 1 270 3 0 5 15 9 17 3 0 36 16 19 59 8 7 101 5 1 22 0 1 54 3 0 194 1 2 6 1 0 4 0 1 32 26 27 15 5 0 54 6 4 320 5 4 8 0 1 52 9 10 15 7 0 171 chain 18559 chr12 133851895 + 89642953 89643243 L1PA16 3655 + 3360 3624 131334 213 7 4 13 24 6 7 5 0 21 chain 5377 chr12 133851895 + 89665621 89665716 MLT1C 463 + 351 449 191231 56 2 3 12 8 0 6 0 10 11 chain 23776 chr12 133851895 + 89688076 89688373 AluSp 311 + 0 296 111617 30 6 5 261 chain 2947 chr12 133851895 + 89690270 89690301 U2 167 + 0 31 226122 31 chain 25400 chr12 133851895 + 89697408 89697714 AluSp 311 + 4 308 102684 121 2 0 183 chain 2847 chr12 133851895 + 89698977 89699007 U2 167 + 1 31 227877 30 chain 22014 chr12 133851895 + 89755745 89756002 AluSp 311 - 43 300 120163 257 chain 19217 chr12 133851895 + 89781859 89782093 AluSc5 308 - 19 250 129483 161 3 0 70 chain 117403 chr12 133851895 + 89801594 89803309 L1PA7 6471 - 10 1409 31995 255 1 0 53 0 1 343 317 0 177 1 2 5 0 2 172 1 0 102 1 0 287 chain 49796 chr12 133851895 + 89803313 89803919 L1P3 4156 + 3536 4139 59158 566 16 13 24 chain 524228 chr12 133851895 + 89834430 89840486 L1PA5 6144 + 0 6094 4747 120 0 14 59 7 11 965 9 0 93 9 21 100 0 1 31 0 5 504 0 1 189 0 1 139 0 1 1267 5 4 1098 1 0 4 0 1 668 0 4 412 0 1 96 0 1 182 4 5 78 0 2 16 chain 15416 chr12 133851895 + 89853003 89853186 L1PA4 6152 + 5958 6140 140146 42 5 4 136 chain 12704 chr12 133851895 + 89854812 89854987 MER30 238 - 0 192 149438 18 0 1 5 1 0 15 0 3 71 4 18 61 chain 20971 chr12 133851895 + 89889838 89890128 MER1A 529 - 121 521 124027 20 0 27 69 5 6 140 7 89 49 chain 5001 chr12 133851895 + 89892997 89893054 L1PA16 3655 + 3459 3516 195128 57 chain 126483 chr12 133851895 + 89896887 89898390 SVA_C 1631 + 29 1623 28949 429 0 76 316 99 112 8 0 1 32 0 1 619 chain 2895 chr12 133851895 + 89897632 89897668 SVA_C 1631 + 810 846 133966 36 chain 2495 chr12 133851895 + 89897668 89897704 SVA_C 1631 + 806 842 158994 36 chain 15015 chr12 133851895 + 89900560 89900733 LTR30 714 + 1 174 141277 173 chain 4169 chr12 133851895 + 89907609 89907658 MER1B 344 + 290 339 204984 49 chain 26436 chr12 133851895 + 89994425 89994725 AluSq10 312 - 12 312 98283 300 chain 3046 chr12 133851895 + 90004368 90004495 MER5A 189 + 7 141 224091 16 18 23 19 52 54 22 chain 29955 chr12 133851895 + 90047054 90047373 AluYb8 318 - 0 318 84958 192 1 0 126 chain 17839 chr12 133851895 + 90061491 90061711 L1P4 1494 + 615 835 133276 220 chain 24124 chr12 133851895 + 90105800 90106081 AluSc5 308 + 8 289 109623 281 chain 26581 chr12 133851895 + 90110448 90110826 THE1C 375 + 0 375 97720 179 0 3 14 0 3 5 25 17 129 1 0 25 chain 71968 chr12 133851895 + 90118983 90119988 L1PA13 3608 + 2416 3422 47488 186 1 6 41 0 1 54 0 1 82 8 9 120 0 3 209 1 0 82 3 0 57 8 6 60 9 8 49 1 0 5 3 1 26 chain 46431 chr12 133851895 + 90121585 90122449 L1PA15 4387 + 3438 4292 61655 101 7 6 267 2 0 18 11 7 23 62 66 5 1 0 36 0 1 4 78 79 53 1 0 26 1 0 25 1 2 28 8 7 15 4 0 9 2 1 53 1 0 22 chain 10451 chr12 133851895 + 90128292 90128463 MLT1H1 527 + 327 520 158487 17 30 52 124 chain 7857 chr12 133851895 + 90137439 90137647 L1MA3 4352 + 4147 4352 171952 33 1 0 18 14 23 23 17 15 23 1 0 6 1 0 19 8 7 12 10 4 22 chain 3444 chr12 133851895 + 90147978 90148016 L1MA6 2487 + 2338 2376 216288 38 chain 3714 chr12 133851895 + 90149181 90149247 L1MB3 1562 + 1442 1509 211721 14 11 12 41 chain 44596 chr12 133851895 + 90157975 90158493 L1PA6 6164 + 5635 6159 63482 497 0 8 14 2 0 5 chain 19616 chr12 133851895 + 90181089 90181444 THE1D 372 + 2 372 128344 59 17 17 88 61 73 21 1 4 108 chain 542158 chr12 133851895 + 90200364 90206378 L1PA3long 6157 - 5 6157 2476 1790 0 2 1126 0 4 1991 0 1 168 0 2 164 0 128 621 1 2 153 chain 18279 chr12 133851895 + 90216378 90216610 L1PA16 3655 + 3364 3593 132132 214 4 1 14 chain 10470 chr12 133851895 + 90220906 90221120 L1PB1 5432 + 5236 5427 158386 44 1 0 12 17 6 10 1 0 18 10 7 13 2 0 24 1 0 22 1 0 12 7 6 12 2 0 5 chain 73296 chr12 133851895 + 90260873 90261665 SVA_E 1901 - 0 919 46886 542 0 127 250 chain 37524 chr12 133851895 + 90284916 90285338 L1PA4 6152 + 5717 6140 72785 280 1 2 141 chain 21971 chr12 133851895 + 90306589 90306918 L1PB2 3958 - 121 445 120351 62 1 0 10 0 1 9 2 0 24 1 4 41 6 5 62 6 5 23 5 0 37 0 1 40 chain 28826 chr12 133851895 + 90346060 90346371 AluYa5 310 - 0 310 89778 217 1 0 93 chain 17227 chr12 133851895 + 90438729 90438979 L1PA8 5853 - 9 252 134984 84 1 0 19 2 1 48 17 14 70 2 0 7 chain 4581 chr12 133851895 + 90453337 90453395 MER5A1 166 + 103 161 199865 58 chain 49921 chr12 133851895 + 90482887 90483532 L1PA8 5853 - 0 638 59075 93 1 0 19 2 1 44 1 0 14 1 0 74 10 8 36 1 0 349 chain 44372 chr12 133851895 + 90519910 90520583 L1PA13 3608 + 2871 3522 63729 261 2 1 27 1 0 113 2 0 20 0 1 41 9 8 13 1 0 35 1 0 4 3 1 47 2 0 5 2 0 20 1 0 20 24 16 14 1 0 4 chain 53809 chr12 133851895 + 90541274 90541913 LTR12_ 688 + 0 688 56471 110 5 54 524 chain 10470 chr12 133851895 + 90541913 90542061 MER50 708 + 549 696 158389 81 12 11 55 chain 28841 chr12 133851895 + 90583702 90584071 THE1B 368 + 0 368 89711 169 1 0 4 1 0 4 0 2 4 1 0 185 chain 98148 chr12 133851895 + 90602111 90603543 THE1C-int 1605 + 0 1597 37238 12 16 15 83 0 54 155 0 1 11 0 1 112 6 13 178 30 23 101 9 3 47 4 12 161 1 32 35 0 1 50 66 68 113 0 73 160 0 1 82 chain 260168 chr12 133851895 + 90613626 90616576 L1PA4 6152 - 16 2978 15687 135 1 2 139 0 1 218 4 0 855 0 1 30 0 3 22 0 1 246 1 6 863 0 3 353 0 1 83 chain 16939 chr12 133851895 + 90631167 90631516 THE1B 368 + 0 366 135753 63 43 54 59 0 2 6 52 56 59 13 13 54 chain 64356 chr12 133851895 + 90634107 90634854 L1PA5 6144 + 5307 6065 50860 11 0 9 348 0 1 214 0 1 174 chain 21212 chr12 133851895 + 90653582 90653830 AluY 311 + 37 286 123167 88 0 1 160 chain 9655 chr12 133851895 + 90734977 90735103 MER85 139 - 0 137 162323 34 0 11 92 chain 21180 chr12 133851895 + 90766040 90766282 L1PA6 6164 - 8 250 123276 242 chain 32599 chr12 133851895 + 90778283 90778738 MER75 514 + 44 503 79848 27 0 2 34 17 20 124 0 2 64 1 0 76 1 0 96 1 0 14 chain 28383 chr12 133851895 + 90780393 90780695 AluYb8 318 + 2 304 91650 302 chain 3180 chr12 133851895 + 90790996 90791037 MADE1 96 - 54 96 221348 4 0 1 37 chain 116042 chr12 133851895 + 90804377 90805715 SVA_B 1603 + 50 1597 32440 373 0 116 90 0 1 204 1 0 4 0 82 38 0 4 14 1 0 204 0 8 409 chain 32834 chr12 133851895 + 90828070 90828527 MLT2A1 477 + 5 477 79485 164 4 1 11 0 1 203 4 0 18 16 37 37 chain 130808 chr12 133851895 + 90828527 90830154 HERVL-int 5654 + 0 1719 27907 20 5 0 43 7 0 5 1 0 309 0 1 310 0 102 55 0 2 872 chain 5994 chr12 133851895 + 90836922 90837033 LTR12B 2670 - 1122 1222 185299 16 12 9 52 8 0 23 chain 10111 chr12 133851895 + 90838490 90838603 L1PA2 6032 + 5917 6030 160037 113 chain 169104 chr12 133851895 + 90839343 90841590 HERV9-int 5642 - 827 5641 22161 179 0 1795 512 0 770 163 0 1 171 2 1 54 0 10 56 7 1 83 85 0 21 1 86 28 5 5 88 1 0 186 8 7 597 chain 50720 chr12 133851895 + 90841612 90842299 LTR12_ 688 - 0 688 58490 42 1 0 71 3 0 7 1 34 108 2 0 336 25 0 65 1 0 25 chain 54844 chr12 133851895 + 90845087 90845718 L1PA5 6144 - 5 633 55804 538 3 0 90 chain 28567 chr12 133851895 + 90853089 90854004 THE1C-int 1605 + 118 1597 90889 34 539 1101 247 0 2 95 chain 68719 chr12 133851895 + 90870032 90870829 L1PA5 6144 - 13 810 48936 797 chain 23353 chr12 133851895 + 90871972 90872251 AluSc 308 + 18 295 113910 262 2 0 15 chain 39355 chr12 133851895 + 90880950 90881438 L1PA7 6471 - 7 496 70244 155 0 1 151 2 1 5 0 1 175 chain 41680 chr12 133851895 + 90903965 90904491 L1P3 4156 - 17 540 67050 15 0 1 8 3 2 6 2 0 281 6 5 205 chain 47162 chr12 133851895 + 90919053 90919600 L1PA4 6152 - 39 587 61077 41 0 1 32 0 1 33 2 1 439 chain 66572 chr12 133851895 + 90927830 90928558 L1PA3long 6157 - 0 728 49841 728 chain 560070 chr12 133851895 + 90930383 90936412 L1PA2 6032 + 3 6032 354 6029 chain 15991 chr12 133851895 + 90997983 90998172 THE1B-int 1605 + 1411 1600 138380 189 chain 15368 chr12 133851895 + 90999337 90999506 L1PA5 6144 - 16 185 140295 169 chain 42601 chr12 133851895 + 91002279 91002830 MLT2A2 560 - 0 560 65898 6 0 4 17 0 1 235 1 2 91 7 10 194 chain 77976 chr12 133851895 + 91009035 91009960 L1P2 5180 + 1584 2509 44527 925 chain 123547 chr12 133851895 + 91026876 91028488 L1PA8 5853 + 4237 5853 29861 127 1 0 384 0 1 258 0 2 9 0 1 464 0 4 77 1 0 44 2 0 74 1 0 7 1 0 55 1 0 10 4 1 5 0 2 47 0 13 8 16 7 16 chain 29877 chr12 133851895 + 91034371 91034689 AluYb8 318 - 0 318 85178 318 chain 72825 chr12 133851895 + 91039569 91040509 L1PA8A 6298 + 5341 6290 47116 139 0 3 12 1 4 31 0 1 46 1 2 428 0 1 116 0 1 66 1 0 99 chain 81529 chr12 133851895 + 91042408 91043337 L1PA4 6152 - 555 1487 42968 457 0 1 261 0 2 211 chain 49288 chr12 133851895 + 91043343 91043915 L1PA4 6152 + 5583 6152 59520 116 13 5 437 0 5 6 chain 89102 chr12 133851895 + 91059816 91060916 L1PA7 6471 + 5369 6466 39968 245 2 1 279 0 2 496 8 11 54 7 0 9 chain 139342 chr12 133851895 + 91080087 91081616 L1PA3long 6157 + 4628 6157 26241 1529 chain 17491 chr12 133851895 + 91089011 91089270 THE1C 375 - 0 255 134288 71 0 1 27 8 9 84 5 0 38 2 1 24 chain 29208 chr12 133851895 + 91121192 91121570 L1PA7 6471 - 10 389 88007 136 17 11 175 0 1 29 0 6 21 chain 4013 chr12 133851895 + 91122432 91122512 Tigger4a 237 + 25 91 207200 15 15 0 11 2 3 37 chain 28907 chr12 133851895 + 91130640 91130946 AluYb8 318 + 0 306 89430 306 chain 6824 chr12 133851895 + 91130946 91131058 THE1B 368 + 222 331 178764 8 1 0 12 2 1 63 7 6 19 chain 45495 chr12 133851895 + 91140317 91140921 LTR12_ 688 + 0 688 62502 82 24 0 56 0 1 108 1 2 76 0 3 34 0 103 223 chain 491114 chr12 133851895 + 91143295 91149537 L1PA7 6471 - 48 6466 7313 799 0 3 68 8 0 35 10 0 376 0 1 565 1 2 61 0 5 20 0 1 536 0 1 409 12 4 37 0 3 50 2 0 99 1 0 136 1 0 4 0 1 16 0 1 152 6 7 6 1 0 124 8 12 256 0 1 307 1 0 4 0 1 182 0 1 505 0 1 269 0 1 4 1 0 236 0 1 4 1 0 42 5 7 331 5 15 204 20 190 114 18 17 27 0 5 4 5 0 129 0 1 25 chain 27169 chr12 133851895 + 91149612 91149967 THE1A 353 + 0 353 95699 83 0 1 4 1 0 22 1 0 92 1 0 151 chain 47322 chr12 133851895 + 91179641 91180266 LTR12_ 688 + 13 665 60955 40 0 41 44 25 10 143 0 1 373 chain 55985 chr12 133851895 + 91186387 91187044 L1PA7 6471 - 23 680 55128 657 chain 64586 chr12 133851895 + 91193852 91194598 L1PA5 6144 + 5384 6131 50755 713 1 2 32 chain 84775 chr12 133851895 + 91217656 91219059 LTR12D 1347 + 0 1347 41605 39 18 10 191 0 1 7 27 27 21 8 61 103 0 41 37 0 31 132 36 5 314 43 16 12 10 9 25 1 0 36 23 0 81 91 0 148 chain 35767 chr12 133851895 + 91228930 91229388 MER4A1 472 + 0 462 75179 100 0 2 85 0 2 31 0 1 202 1 0 39 chain 28896 chr12 133851895 + 91235614 91235918 AluYk11 308 + 0 304 89469 304 chain 34823 chr12 133851895 + 91251901 91252466 MER61F 604 - 30 598 76444 12 12 19 10 3 0 168 27 26 25 6 7 68 11 20 22 0 1 50 10 1 119 10 8 12 chain 63973 chr12 133851895 + 91255662 91256551 L1PA11 4918 - 443 1313 51021 49 21 19 11 17 16 52 27 9 263 0 1 6 1 0 437 0 2 5 chain 9441 chr12 133851895 + 91260281 91260465 MSTA 426 + 208 414 163353 10 0 8 12 3 0 58 41 57 5 0 1 55 chain 45287 chr12 133851895 + 91266124 91266622 L1PA2 6032 + 5534 6032 62734 498 chain 27203 chr12 133851895 + 91268237 91268612 MLT2A1 477 + 0 397 95585 14 0 1 125 0 1 21 7 11 32 0 1 58 0 8 52 1 0 35 6 13 12 0 1 12 chain 439733 chr12 133851895 + 91268748 91274369 HERVL-int 5654 + 0 5654 9060 175 1 2 472 0 1 15 0 1 37 1 2 39 7 8 118 0 5 164 0 1 38 0 1 228 0 1 375 21 22 399 1 4 82 1 2 45 0 6 328 0 1 85 32 53 272 0 1 5 6 5 583 1 3 377 2 1 5 0 1 101 9 14 596 5 6 73 0 1 4 1 0 24 0 1 160 0 1 71 0 7 127 3 0 69 3 0 7 11 4 84 18 0 123 0 1 217 chain 34020 chr12 133851895 + 91274369 91274952 MLT2A1 477 + 0 477 77594 142 0 1 26 1 5 32 0 1 35 0 1 81 1 0 57 0 4 12 115 15 13 16 0 52 chain 10897 chr12 133851895 + 91301128 91301477 L1PB1 5432 + 5114 5430 156600 24 1 0 8 1 0 10 27 22 42 2 1 15 1 0 43 90 71 19 25 23 12 1 0 18 1 0 4 1 0 4 chain 4154 chr12 133851895 + 91315322 91315371 MADE1 96 + 46 95 205190 49 chain 13152 chr12 133851895 + 91319520 91319734 LTR22B 500 + 278 500 147638 22 7 12 31 12 17 26 0 1 25 2 0 75 1 0 13 chain 269094 chr12 133851895 + 91320253 91324943 L1PA7 6471 + 2967 6456 15229 111 0 2 5 5 3 8 0 4 50 0 1 237 1 0 5 1 2 183 0 5 253 1 0 168 1 0 5 2 1 98 5 6 127 0 9 219 1 7 196 0 4 309 9 8 89 0 6 51 253 8 97 0 1 129 3 0 141 1 60 73 1048 0 191 6 7 254 0 1 350 0 1 4 chain 10146 chr12 133851895 + 91322393 91322513 L1PA7 6471 + 4123 4243 158692 120 chain 8796 chr12 133851895 + 91322513 91322646 L1PA7 6471 - 2085 2222 165252 26 3 10 82 4 1 18 chain 71300 chr12 133851895 + 91323110 91324138 MER11A 1151 - 14 1151 47797 149 6 7 60 0 1 37 18 0 21 8 41 111 1 0 25 0 1 146 1 2 92 29 30 120 4 0 26 9 12 28 1 0 37 0 1 9 0 91 90 chain 358249 chr12 133851895 + 91325215 91330121 L1PB1 5432 - 469 5373 11396 61 0 2 203 0 4 72 3 0 665 1 0 231 1 3 465 9 10 121 23 23 261 1 0 20 3 2 75 7 8 172 0 1 30 30 41 160 1 0 86 44 48 31 1 0 58 0 1 393 0 2 112 0 6 178 24 11 5 2 0 8 1 0 218 0 3 8 0 7 21 1 0 101 54 30 461 5 1 146 1 2 7 1 0 216 7 11 31 0 2 70 chain 26877 chr12 133851895 + 91341388 91341744 MER48 407 + 16 354 96710 14 0 1 5 1 0 96 20 1 63 0 1 157 chain 263959 chr12 133851895 + 91377078 91380295 HERV9-int 5642 + 0 3332 15486 176 1 2 293 1 3 125 4 5 5 2 0 107 6 0 79 1 0 143 0 85 78 42 35 108 1 0 267 0 3 138 1 0 5 0 1 203 0 37 497 0 2 676 0 1 258 chain 68114 chr12 133851895 + 91404095 91404918 L1PA7 6471 - 4 837 49197 14 0 4 305 0 6 504 chain 24700 chr12 133851895 + 91466054 91466354 AluY 311 + 11 301 106435 158 5 0 111 6 1 20 chain 20892 chr12 133851895 + 91477875 91478124 L1PA5 6144 - 6 255 124306 249 chain 94998 chr12 133851895 + 91480773 91482415 L1PA11 4918 - 915 2192 38098 101 10 3 197 5 6 30 3 0 138 0 4 321 363 0 119 11 9 173 0 4 110 8 9 53 chain 3388 chr12 133851895 + 91507474 91507512 L1PA8 5853 - 206 244 217328 38 chain 11722 chr12 133851895 + 91514963 91515127 L1PA8 5853 - 0 157 153375 83 5 0 10 1 0 19 2 1 44 chain 50820 chr12 133851895 + 91544312 91544962 L1PA8A 6298 + 5624 6281 58421 258 1 0 21 1 0 264 4 12 16 5 6 80 chain 25696 chr12 133851895 + 91557876 91558153 L1HS 6032 + 5752 6029 101299 277 chain 6178 chr12 133851895 + 91589668 91589776 L1MCa 1829 - 399 502 183757 35 0 1 28 18 12 27 chain 136395 chr12 133851895 + 91600530 91602206 L1PA7 6471 - 1 1686 26765 31 0 1 306 0 1 393 17 15 99 0 1 66 0 1 397 2 0 5 0 2 172 19 25 7 0 1 162 chain 32669 chr12 133851895 + 91612200 91612557 L1PA4 6152 - 1 358 79733 357 chain 320603 chr12 133851895 + 91625833 91629433 L1PA4 6152 + 2544 6145 12572 530 0 2 864 0 1 688 1 0 251 2 1 1264 chain 68346 chr12 133851895 + 91631805 91632702 L1PA8 5853 - 0 893 49104 53 5 6 34 1 0 19 2 1 50 1 0 11 1 0 55 0 1 14 2 0 45 1 0 48 0 1 555 chain 205440 chr12 133851895 + 91636045 91638677 L1P3 4156 + 0 2651 18829 251 1 0 30 15 25 14 1 0 89 1 0 186 0 1 110 0 5 493 3 0 178 0 3 219 0 1 272 2 0 273 23 26 50 1 0 4 1 2 190 1 4 209 2 3 13 chain 33409 chr12 133851895 + 91638900 91639319 L1PA7 6471 + 6046 6464 78548 85 0 1 180 9 10 137 3 0 5 chain 31061 chr12 133851895 + 91676553 91676895 L1PA3long 6157 - 268 614 82413 70 0 1 198 0 3 74 chain 4376 chr12 133851895 + 91676895 91676942 L1PA3long 6157 + 6110 6157 202250 47 chain 29899 chr12 133851895 + 91679387 91679716 L1PA2 6032 + 5701 6030 85103 329 chain 122498 chr12 133851895 + 91690596 91692720 L1PA8 5853 - 0 1651 30222 93 1 0 12 0 1 6 2 1 50 1 0 7 6 5 70 3 1 43 1 0 31 6 0 39 9 0 11 502 50 338 1 0 7 1 4 75 2 0 3 1 0 127 0 1 91 0 6 8 11 5 427 2 0 5 0 2 132 chain 37756 chr12 133851895 + 91714114 91714560 L1PA6 6164 + 5720 6162 72482 290 0 1 6 1 0 139 4 0 6 chain 3676 chr12 133851895 + 91733040 91733086 MLT1A 405 + 310 356 212287 46 chain 12638 chr12 133851895 + 91751545 91751690 L1PA7 6471 + 6320 6465 149692 145 chain 40507 chr12 133851895 + 91756372 91756933 MER41A 554 - 0 554 68585 15 0 1 63 1 6 205 32 18 152 0 1 93 chain 9176 chr12 133851895 + 91777950 91778061 MER85 139 + 0 121 164676 89 0 10 22 chain 12472 chr12 133851895 + 91788394 91788554 THE1D-int 1627 + 187 347 150369 160 chain 6122 chr12 133851895 + 91804677 91804779 MER2 342 + 136 246 184247 20 0 1 16 0 7 35 14 14 17 chain 3799 chr12 133851895 + 91818608 91818650 MER46C 351 + 275 317 210411 42 chain 25830 chr12 133851895 + 91841510 91841802 AluY 311 + 18 311 100745 108 0 1 184 chain 75738 chr12 133851895 + 91846000 91846875 L1PA5 6144 - 6 899 45628 64 3 1 720 2 22 86 chain 17897 chr12 133851895 + 91850129 91850352 AluY 311 + 84 306 133107 46 2 0 9 4 5 162 chain 5478 chr12 133851895 + 91855031 91855092 L1PA7 6471 - 1802 1863 190231 61 chain 147979 chr12 133851895 + 91855103 91856866 L1PA7 6471 + 4682 6455 24881 410 0 3 507 0 1 19 0 8 73 2 0 752 chain 28351 chr12 133851895 + 91867751 91868128 L1PA8 5853 + 5476 5846 91757 88 1 0 44 2 0 67 5 4 14 1 0 47 2 1 19 1 0 86 chain 31449 chr12 133851895 + 91877566 91878011 LTR12F 595 - 23 595 81732 124 0 30 67 0 64 72 20 38 31 2 0 34 0 12 39 0 4 34 0 1 22 chain 22354 chr12 133851895 + 91881739 91882013 L1PA7 6471 + 6200 6469 118685 259 5 0 10 chain 154817 chr12 133851895 + 91912672 91914475 L1PA5 6144 - 759 2561 23998 89 1 5 320 7 7 512 3 0 95 16 1 8 0 4 393 0 9 359 chain 64815 chr12 133851895 + 91914475 91915561 L1PA5 6144 + 5385 6129 50622 292 342 0 452 chain 331334 chr12 133851895 + 91950263 91954415 L1P3 4156 + 0 4136 12151 251 1 0 133 2 6 5 3 0 14 1 2 1490 1 0 290 0 1 66 0 1 327 1 0 43 0 1 114 3 6 127 0 3 392 1 2 59 1 0 213 0 4 141 2 0 68 1 0 49 1 5 16 29 3 275 2 0 7 2 1 21 chain 29726 chr12 133851895 + 91962929 91963386 MLT2A1 477 + 0 477 85740 81 9 10 78 4 1 54 5 3 26 1 0 4 0 1 125 33 57 37 chain 29532 chr12 133851895 + 91963593 91963903 AluYa5 310 - 0 310 86520 310 chain 5710 chr12 133851895 + 91976231 91976304 L1PA7 6471 + 6398 6470 188009 8 1 0 64 chain 77585 chr12 133851895 + 91990937 91992279 L1PB1 5432 - 10 1195 44698 18 1 0 11 1 0 23 1 0 24 67 50 16 1 0 44 10 9 8 1 0 51 2 0 9 2 0 3 2 0 12 8 6 24 3 0 9 147 12 19 5 17 350 0 2 77 3 0 93 0 2 22 4 3 122 1 0 6 1 2 141 chain 3027 chr12 133851895 + 92004736 92004773 MLT1F2 592 + 507 544 224440 37 chain 3960 chr12 133851895 + 92028424 92028471 LTR12C 1709 + 1039 1086 207985 47 chain 552 chr12 133851895 + 92028547 92028582 LTR12C 1709 + 683 718 219720 35 chain 20773 chr12 133851895 + 92070708 92071087 THE1D 372 + 0 372 124704 56 43 35 75 57 58 148 chain 32564 chr12 133851895 + 92089068 92089468 L1PA7 6471 - 10 411 79916 134 6 7 260 chain 40303 chr12 133851895 + 92096014 92096543 MLT2A2 560 - 0 560 68877 143 0 11 122 0 4 76 6 14 10 4 12 168 chain 345153 chr12 133851895 + 92102055 92105875 L1PA3long 6157 - 0 3828 11754 856 0 4 1084 1 3 1033 1 0 319 0 3 526 chain 41404 chr12 133851895 + 92127362 92127853 L1PA7 6471 - 290 782 67411 426 0 1 65 chain 19900 chr12 133851895 + 92127853 92128136 L1PA7 6471 + 6181 6459 127482 127 31 26 125 chain 141820 chr12 133851895 + 92143566 92145169 L1PA4 6152 - 1 1605 25853 142 8 0 9 0 9 232 0 1 195 1 0 1016 chain 23768 chr12 133851895 + 92151561 92151840 AluY 311 + 15 295 111661 111 0 1 168 chain 110903 chr12 133851895 + 92175351 92176905 L1PA11 4918 + 3056 4578 33965 580 16 0 24 2 0 333 0 1 54 0 1 24 6 11 192 0 1 41 17 8 39 1 5 23 2 1 65 1 0 15 2 0 5 70 60 15 1 0 13 2 0 11 chain 24126 chr12 133851895 + 92178388 92178767 THE1D 372 + 0 372 109608 76 24 5 47 0 4 54 5 8 44 2 8 83 9 8 35 chain 329421 chr12 133851895 + 92199214 92203827 L1PA11 4918 + 8 4578 12224 7 1 0 27 2 0 36 2 0 6 7 6 18 6 5 15 2 0 52 1 0 33 9 6 106 12 10 197 4 8 19 5 4 4 1 0 176 0 1 121 7 8 246 0 1 200 1 0 6 0 1 276 5 9 158 5 0 15 0 1 27 0 1 186 7 7 134 0 3 34 48 42 21 1 0 187 0 12 25 3 1 6 0 3 16 13 10 20 1 0 19 7 0 16 10 6 50 1 0 1048 4 0 543 14 11 94 2 0 5 16 15 65 2 1 19 0 1 61 2 0 32 44 32 15 1 0 13 2 0 11 chain 16382 chr12 133851895 + 92225820 92226009 L1PA5 6144 + 5939 6128 137251 189 chain 5990 chr12 133851895 + 92239666 92239753 LTR37A 408 + 79 164 185333 49 1 0 26 1 0 10 chain 30947 chr12 133851895 + 92268825 92269273 MLT2A1 477 + 0 477 82606 162 14 11 29 0 5 80 0 2 44 1 2 50 32 56 36 chain 44459 chr12 133851895 + 92294172 92294795 THE1D-int 1627 + 25 622 63627 11 0 1 16 39 13 4 1 0 262 2 4 14 4 0 111 0 2 159 chain 13370 chr12 133851895 + 92295392 92295578 THE1D 372 + 0 185 146815 55 14 13 117 chain 110021 chr12 133851895 + 92316813 92318230 LTR12C 1709 - 0 1709 34212 84 8 7 57 1 0 89 0 4 6 7 6 226 13 6 93 0 1 12 3 1 5 1 0 26 0 4 149 0 277 186 1 3 6 1 0 160 0 18 283 chain 56610 chr12 133851895 + 92319293 92319964 L1PA5 6144 + 5454 6131 54773 30 0 3 78 1 0 240 0 3 191 1 2 130 chain 7192 chr12 133851895 + 92346329 92346418 Tigger1 2417 - 1963 2052 176132 89 chain 80445 chr12 133851895 + 92350874 92351883 L1PA8 5853 + 4834 5846 43406 59 1 7 109 0 2 11 7 8 52 0 2 480 1 0 45 2 0 70 1 0 9 1 0 54 1 0 18 1 0 82 1 0 4 chain 4705 chr12 133851895 + 92363116 92363177 MSTA 426 - 3 64 198457 61 chain 17099 chr12 133851895 + 92370934 92371155 L1PA16 3655 - 187 406 135320 178 2 0 41 chain 29517 chr12 133851895 + 92371576 92371884 AluYb8 318 + 0 308 86574 308 chain 28606 chr12 133851895 + 92393003 92393309 AluYf4 310 + 0 306 90710 306 chain 229654 chr12 133851895 + 92409016 92411585 L1PA4 6152 - 1 2583 17322 623 0 2 89 0 3 1110 0 1 305 0 2 20 1 6 421 chain 49823 chr12 133851895 + 92424885 92425482 L1PA7 6471 - 3 597 59140 14 3 0 131 4 3 188 1 2 256 chain 29454 chr12 133851895 + 92425482 92425833 L1PA7 6471 + 5518 5868 86823 103 1 0 247 chain 62132 chr12 133851895 + 92450421 92451214 L1PA8A 6298 - 7 802 51836 261 0 1 313 3 4 64 11 10 35 3 4 103 chain 62286 chr12 133851895 + 92451217 92451960 L1PA8A 6298 + 4741 5485 51758 84 1 0 64 0 1 305 4 5 285 chain 3927 chr12 133851895 + 92453348 92453393 MER20 218 - 64 109 208457 45 chain 20104 chr12 133851895 + 92455551 92455894 THE1B 368 - 0 368 126813 74 68 80 16 2 0 29 1 0 28 0 1 81 0 15 44 chain 3089 chr12 133851895 + 92467095 92467130 MLT1C 463 + 428 463 223111 35 chain 3527 chr12 133851895 + 92475259 92475300 MIR 256 + 85 126 214917 41 chain 25768 chr12 133851895 + 92481999 92482305 AluY 311 + 10 304 101015 170 12 0 124 chain 22641 chr12 133851895 + 92512407 92512715 HSMAR2 1300 + 1 338 117371 44 2 0 55 16 47 191 chain 3158 chr12 133851895 + 92516299 92516335 MLT2B1 522 - 3 39 221772 36 chain 8000 chr12 133851895 + 92564131 92564229 HY3 101 - 2 101 171061 82 0 1 16 chain 2982 chr12 133851895 + 92575349 92575385 Tigger1 2417 - 83 119 225433 36 chain 30460 chr12 133851895 + 92608672 92609436 L1MA5A 2387 - 81 784 83515 11 1 0 65 34 15 30 1 0 20 10 8 19 1 13 16 33 36 4 1 0 33 10 9 163 1 0 21 1 0 6 170 123 47 7 6 17 8 7 34 chain 11626 chr12 133851895 + 92618176 92618304 L1PA5 6144 - 5 133 153789 128 chain 38934 chr12 133851895 + 92644742 92645281 L1PB1 5432 - 1483 2023 70822 53 0 1 6 8 10 147 5 7 174 21 15 53 0 2 72 chain 52132 chr12 133851895 + 92648873 92649584 L1PA13 3608 - 129 831 57539 31 1 0 5 2 0 47 2 0 10 1 0 29 0 1 20 1 0 63 2 0 111 2 1 33 1 0 122 0 1 228 chain 8817 chr12 133851895 + 92661142 92661320 L1MC2 1988 - 0 163 166568 41 39 28 67 9 5 22 chain 559186 chr12 133851895 + 92707774 92713799 L1PA2 6032 + 7 6031 409 6011 1 0 13 chain 381540 chr12 133851895 + 92713829 92718970 L1PB1 5432 - 547 5413 10715 207 1 0 38 0 1 18 0 1 4 4 0 7 9 13 52 0 1 68 0 4 738 5 8 35 0 1 526 5 6 287 0 15 5 0 3 37 0 1 24 0 5 287 7 0 27 0 12 185 0 3 13 305 0 95 0 1 190 0 2 302 1 0 205 0 1 47 14 0 5 1 0 1002 1 0 384 chain 62078 chr12 133851895 + 92738841 92739573 THE1A-int 1579 + 840 1573 51861 685 0 1 47 chain 35446 chr12 133851895 + 92780500 92780939 LTR12F 595 + 12 595 75625 60 0 143 149 0 1 230 chain 437233 chr12 133851895 + 92780969 92786336 HERV9-int 5642 + 10 5400 9118 27 0 1 536 37 0 123 21 0 19 6 0 130 0 5 12 0 85 153 23 10 418 0 1 50 14 1 242 1 2 1996 0 1 4 1 0 484 9 26 8 0 1 871 17 19 165 chain 35880 chr12 133851895 + 92787526 92787976 LTR12F 595 + 0 594 75033 79 2 145 140 0 1 229 chain 119436 chr12 133851895 + 92799450 92800859 LTR12C 1709 - 0 1709 31252 84 5 4 393 0 4 30 0 1 75 9 6 104 0 278 131 0 21 578 chain 6648 chr12 133851895 + 92873002 92873192 MLT1B 390 - 140 336 180108 20 67 72 22 16 17 65 chain 6309 chr12 133851895 + 92912932 92913069 MER58A 224 + 45 214 182727 20 1 0 21 42 75 53 chain 2817 chr12 133851895 + 92924002 92924176 MER20 218 - 55 216 228498 17 98 84 26 21 22 12 chain 5649 chr12 133851895 + 92938691 92938755 U13_ 108 - 26 90 188572 64 chain 33472 chr12 133851895 + 92958951 92959514 L1PA15 4387 + 3827 4353 78457 64 3 1 41 1 0 171 1 0 26 1 0 55 1 0 22 13 10 39 52 38 6 7 0 14 3 1 14 5 0 24 chain 3329 chr12 133851895 + 92960958 92960993 L1PA7 6471 - 1057 1092 218417 35 chain 82663 chr12 133851895 + 92960993 92962006 L1PA7 6471 + 5424 6456 42477 45 0 5 135 1 5 12 0 5 43 11 13 305 0 3 461 chain 31852 chr12 133851895 + 92970772 92971154 L1PA5 6144 - 0 383 81094 145 1 2 236 chain 89340 chr12 133851895 + 92971400 92972404 L1PA4 6152 - 0 1004 39869 1004 chain 31121 chr12 133851895 + 93013688 93014123 LTR3B_ 500 - 12 500 82304 28 1 38 36 0 17 11 0 1 6 11 13 35 6 3 222 1 0 78 chain 35689 chr12 133851895 + 93015481 93015931 LTR3B_ 500 - 54 500 75288 143 6 3 222 1 0 78 chain 7125 chr12 133851895 + 93044773 93044935 MER57-int 2662 - 3 150 176580 31 4 3 27 14 9 6 1 0 20 8 5 9 1 0 6 2 0 26 2 0 5 chain 41921 chr12 133851895 + 93064968 93065469 L1PA7 6471 + 5956 6469 66729 180 0 1 58 1 5 252 0 7 10 chain 555844 chr12 133851895 + 93071992 93078123 L1PA3long 6157 - 9 6151 742 847 0 1 942 0 4 409 0 1 1254 1 0 730 0 1 35 0 5 1913 chain 69320 chr12 133851895 + 93079570 93080360 L1P1 4361 - 20 806 48672 12 2 1 23 1 0 155 1 0 474 1 0 121 chain 11935 chr12 133851895 + 93087683 93087830 THE1C-int 1605 - 977 1124 151500 147 chain 13196 chr12 133851895 + 93087830 93088108 THE1C 375 - 84 375 147485 42 17 0 8 27 55 5 0 2 34 4 0 6 34 37 16 0 1 85 chain 30962 chr12 133851895 + 93108844 93109223 MLT2A1 477 - 94 477 82583 209 1 5 169 chain 7315 chr12 133851895 + 93153481 93153574 MLT1A 405 + 291 387 175332 15 0 3 78 chain 452407 chr12 133851895 + 93183354 93188649 L1PA6 6164 + 427 6147 8677 90 0 2 48 1 0 298 0 10 31 0 4 345 24 7 31 0 18 131 0 9 39 0 1 910 0 1 197 0 1 585 1 0 6 2 0 115 1 0 91 2 0 354 1 0 156 1 2 45 0 1 735 0 403 688 5 4 362 chain 5905 chr12 133851895 + 93190772 93190839 MER2 342 - 139 206 186138 67 chain 13397 chr12 133851895 + 93214337 93214533 L1PA8 5853 + 5657 5850 146734 24 1 0 59 2 1 16 5 4 89 chain 21349 chr12 133851895 + 93218926 93219252 AluYk4 311 + 11 298 122693 35 48 18 109 3 0 74 11 5 46 chain 29001 chr12 133851895 + 93225579 93225888 AluYb8 318 + 0 307 88980 132 2 0 175 chain 4837 chr12 133851895 + 93277409 93277466 Tigger2b_Pri 1066 + 830 887 196948 57 chain 478080 chr12 133851895 + 93310377 93315538 L1PA2 6032 + 871 6032 7797 5161 chain 57247 chr12 133851895 + 93329248 93330639 MER4E 760 + 0 752 54369 113 347 0 251 310 0 17 10 14 106 0 2 21 0 10 202 0 2 14 chain 3512 chr12 133851895 + 93335581 93335622 THE1D 372 + 331 372 215191 41 chain 23822 chr12 133851895 + 93338586 93338864 AluSp 311 - 22 300 111349 278 chain 4861 chr12 133851895 + 93341410 93341470 MER34A 573 - 64 125 196672 56 0 1 4 chain 7910 chr12 133851895 + 93346426 93346514 U6 107 + 12 100 171582 88 chain 25433 chr12 133851895 + 93357224 93357523 AluSq4 311 - 11 311 102534 168 0 1 131 chain 57925 chr12 133851895 + 93357920 93358653 MER4E1 777 + 0 769 54019 189 1 0 14 0 1 127 1 20 175 9 25 126 7 8 84 chain 122732 chr12 133851895 + 93358911 93360409 L1PA8 5853 - 0 1516 30150 93 1 0 12 0 1 6 2 1 48 1 0 4 7 6 74 2 0 44 1 0 555 1 4 296 0 18 97 0 1 60 0 1 167 0 1 27 chain 38948 chr12 133851895 + 93360435 93361277 MLT2A2 560 + 0 558 70805 183 309 0 13 17 30 173 3 14 46 1 2 97 chain 3404 chr12 133851895 + 93368242 93368284 LTR8A 794 - 0 42 217008 42 chain 45697 chr12 133851895 + 93373895 93374526 L1PA15 4387 + 67 720 62314 178 1 0 53 2 1 53 1 2 54 0 11 24 0 5 24 1 2 94 0 4 79 6 5 12 0 3 49 chain 25611 chr12 133851895 + 93439446 93439810 THE1B 368 + 0 368 101674 169 1 0 21 7 10 14 0 4 7 20 18 125 chain 75679 chr12 133851895 + 93468178 93469145 LTR5_Hs 974 + 0 974 45667 285 0 1 97 0 1 83 0 1 188 1 0 163 8 15 16 23 21 103 chain 27535 chr12 133851895 + 93471141 93471496 THE1A 353 - 0 353 94553 305 0 1 31 4 1 15 chain 5773 chr12 133851895 + 93491033 93491107 MADE1 96 - 5 95 187416 46 0 16 28 chain 9090 chr12 133851895 + 93491795 93491898 L1PA3long 6157 + 6054 6155 165122 5 2 0 96 chain 20835 chr12 133851895 + 93530894 93531144 L1PA5 6144 + 5896 6141 124500 239 5 0 6 chain 22271 chr12 133851895 + 93546799 93547092 AluSg7 307 - 3 307 119030 24 0 13 138 1 0 11 10 9 109 chain 23635 chr12 133851895 + 93556126 93556403 AluSp 311 - 24 301 112389 277 chain 19647 chr12 133851895 + 93558989 93559324 THE1B 368 - 0 368 128260 56 4 5 65 1 0 12 1 0 16 33 40 5 1 0 95 14 42 32 chain 32338 chr12 133851895 + 93571554 93572104 LTR19B 566 + 0 546 80290 159 0 3 130 4 7 17 116 104 23 2 0 7 0 2 38 1 3 53 chain 28929 chr12 133851895 + 93576363 93576674 AluYa5 310 - 0 310 89333 184 1 0 126 chain 3365 chr12 133851895 + 93581936 93581971 MER90a 614 + 576 611 217778 35 chain 5700 chr12 133851895 + 93586919 93586986 MLT1J 494 - 339 405 188112 61 1 0 5 chain 20745 chr12 133851895 + 93598323 93598708 THE1D 372 + 0 372 124804 38 27 9 21 34 35 63 29 34 23 2 1 148 chain 324729 chr12 133851895 + 93602605 93608422 L1PB1 5432 - 28 5372 12403 13 1 0 21 1 0 24 2 0 14 8 5 19 24 12 16 2 1 42 19 17 27 22 9 17 2 0 9 1351 935 267 1 0 42 21 9 178 11 0 358 2 0 94 1 0 9 0 1 423 12 10 309 1 2 26 7 0 493 14 17 150 5 0 287 0 4 141 15 1 7 1 0 57 1 14 98 4 0 63 0 9 158 0 2 449 9 13 92 0 1 106 23 25 248 chain 27638 chr12 133851895 + 93603875 93604203 L1PA5 6144 + 5798 6129 94239 171 6 8 24 0 1 127 chain 25431 chr12 133851895 + 93610381 93610729 THE1B 368 + 0 358 102540 28 12 27 120 1 0 19 4 0 164 chain 15244 chr12 133851895 + 93617634 93617858 MER50 708 - 22 270 140655 45 0 4 118 21 41 40 chain 8647 chr12 133851895 + 93619166 93619378 L1PB3 3668 - 76 256 167492 10 2 1 12 7 3 39 7 5 19 1 0 8 34 17 60 7 0 6 chain 12483 chr12 133851895 + 93648708 93648852 LTR8 732 - 0 144 150324 144 chain 14510 chr12 133851895 + 93655002 93655158 L1PA3long 6157 - 0 156 142860 156 chain 7788 chr12 133851895 + 93659413 93659509 U13_ 108 - 12 108 172363 96 chain 3603 chr12 133851895 + 93675530 93675570 MER57B1 401 + 294 334 213607 40 chain 32116 chr12 133851895 + 93683969 93684382 MER48 407 - 0 407 80660 241 20 0 68 0 9 48 0 4 22 0 1 14 chain 46152 chr12 133851895 + 93684436 93685103 MER4D1 891 + 0 606 61892 368 1 0 53 78 18 9 0 1 8 1 0 149 chain 44949 chr12 133851895 + 93745031 93745576 MER9a2 513 - 0 513 63121 208 32 0 305 chain 26166 chr12 133851895 + 93762996 93763419 MER4D 903 + 159 888 99338 57 7 9 24 7 0 3 6 0 25 1 0 4 5 6 142 1 315 35 0 1 43 11 13 52 chain 3146 chr12 133851895 + 93787318 93787400 MER58B 340 - 117 201 222061 14 0 2 6 30 30 32 chain 48484 chr12 133851895 + 93806259 93806814 LTR10C 591 - 28 585 60126 51 0 2 504 chain 6061 chr12 133851895 + 93820646 93820717 MER30 238 + 124 195 184735 71 chain 23111 chr12 133851895 + 93827796 93828078 AluSc5 308 + 10 291 115092 98 0 1 22 2 0 160 chain 44676 chr12 133851895 + 93845017 93845653 LTR10E 629 - 0 629 63403 7 1 0 36 27 25 9 0 3 5 6 4 241 4 3 122 17 14 144 1 0 16 chain 25995 chr12 133851895 + 93848889 93849232 L1PA8 5853 - 0 337 100037 91 3 2 15 2 1 65 1 0 71 2 0 44 1 0 48 chain 8459 chr12 133851895 + 93854503 93854602 HY3 101 - 2 101 168518 99 chain 17075 chr12 133851895 + 93891278 93891573 L1P4 1494 + 68 356 135391 12 3 0 8 2 0 3 3 0 33 2 1 19 1 0 35 0 3 92 2 0 28 22 24 30 chain 4222 chr12 133851895 + 93923135 93923185 MLT2D 439 + 108 159 204270 36 0 1 14 chain 6267 chr12 133851895 + 93923194 93923290 MER1B 344 + 201 301 183023 67 16 20 13 chain 4010 chr12 133851895 + 93926032 93926125 MLT1B 390 + 0 80 207230 20 19 11 20 6 1 28 chain 13827 chr12 133851895 + 93926137 93926500 THE1B 368 - 0 368 145153 56 7 6 40 1 0 24 6 14 12 145 144 72 chain 3166 chr12 133851895 + 93940793 93940827 L1PA6 6164 + 6126 6160 221614 34 chain 210761 chr12 133851895 + 93951773 93954698 L1PA10 4194 + 1554 4150 18453 69 0 1 497 0 1 279 8 4 223 7 8 241 0 1 31 0 3 25 332 0 321 1 2 127 0 1 345 0 2 371 2 1 9 3 0 34 chain 22383 chr12 133851895 + 93984294 93984588 AluSc5 308 + 4 308 118569 103 1 2 79 2 1 15 9 20 33 1 0 51 chain 24334 chr12 133851895 + 94011691 94012081 MSTA 426 + 0 405 108454 100 3 4 22 27 33 24 1 2 19 1 4 28 2 0 64 9 17 78 2 0 10 chain 17953 chr12 133851895 + 94016840 94017165 THE1D 372 + 8 336 132976 48 29 30 74 0 3 5 10 8 8 1 0 9 3 0 5 21 26 112 chain 8655 chr12 133851895 + 94017207 94017301 L1PA3long 6157 - 1 95 167450 94 chain 48227 chr12 133851895 + 94026334 94026930 THE1D-int 1627 + 1023 1622 60296 114 2 0 5 1 3 184 0 1 125 6 8 159 chain 12729 chr12 133851895 + 94047122 94047364 Tigger3a 397 + 61 324 149340 17 51 61 93 0 1 57 10 20 14 chain 2557 chr12 133851895 + 94057808 94057861 MLT1H1 527 + 11 57 232394 25 15 8 13 chain 4561 chr12 133851895 + 94084962 94085016 LTR41 747 - 19 73 200097 54 chain 10002 chr12 133851895 + 94102598 94102743 MLT1A0 366 - 40 188 160572 118 10 0 10 0 13 7 chain 24251 chr12 133851895 + 94146542 94146901 THE1B 368 - 0 368 108941 115 45 55 29 1 0 169 chain 54029 chr12 133851895 + 94175672 94176274 L1PA4 6152 + 5544 6152 56340 273 0 1 323 0 5 6 chain 7009 chr12 133851895 + 94176301 94176386 AluYf4 310 + 214 297 177409 67 2 0 16 chain 16471 chr12 133851895 + 94181876 94182219 THE1C 375 - 0 366 137009 86 5 6 20 69 90 56 36 37 71 chain 13378 chr12 133851895 + 94184089 94184250 L1PA3long 6157 + 5999 6157 146791 145 4 1 12 chain 9775 chr12 133851895 + 94194399 94194535 THE1D 372 + 224 372 161721 43 7 20 53 1 0 32 chain 17811 chr12 133851895 + 94195848 94196139 L1PB2 3958 - 123 413 133370 28 33 32 22 2 0 22 0 3 46 2 1 41 0 1 21 1 0 73 chain 17846 chr12 133851895 + 94214098 94214347 AluY 311 + 63 305 133252 56 8 0 13 0 1 10 3 0 5 5 8 149 chain 277628 chr12 133851895 + 94266008 94270114 L1MA1 4479 - 291 4331 14768 16 7 0 13 16 17 14 0 3 18 2 0 29 1 0 126 9 5 40 4 3 45 1 0 13 2 0 20 1 0 71 1 0 16 1 0 4 13 11 10 1 0 168 1 0 26 1 0 131 4 0 74 5 0 57 20 14 26 0 1 39 4 0 20 2 0 164 2 0 9 2 0 28 1 0 91 1 0 10 1 0 52 1 0 33 2 0 103 13 12 61 48 14 305 4 5 81 0 4 87 0 1 7 0 2 213 1 17 21 5 4 228 5 4 190 5 8 165 11 30 320 1 0 72 0 5 22 4 0 65 0 1 190 17 24 151 12 8 37 16 9 25 2 0 52 74 57 8 1 0 15 chain 32666 chr12 133851895 + 94278143 94278568 MER61B 427 + 0 427 79738 193 1 4 6 3 0 127 0 2 95 chain 14009 chr12 133851895 + 94284824 94285315 MER4E 760 + 565 755 144550 124 0 4 18 305 0 44 chain 2971 chr12 133851895 + 94289918 94289951 MER53 195 + 26 59 225654 33 chain 34079 chr12 133851895 + 94290751 94291267 LTR9 672 - 99 672 77497 28 2 0 20 28 24 68 0 1 29 20 62 28 4 20 92 0 1 5 1 0 166 0 4 25 chain 9258 chr12 133851895 + 94291997 94292193 LTR39 781 + 8 164 164271 27 26 11 69 36 11 38 chain 6906 chr12 133851895 + 94306961 94307037 L1MB3 1562 + 1248 1324 176207 76 chain 81656 chr12 133851895 + 94307037 94308226 L1PA16 3655 + 2288 3474 42906 10 0 1 16 0 18 12 24 0 154 0 1 169 6 5 55 2 4 152 0 4 14 1 0 19 10 9 96 13 14 47 1 0 104 14 13 88 2 0 122 0 1 58 chain 16777 chr12 133851895 + 94316971 94317193 AluJr 308 + 62 284 136173 49 1 0 23 3 0 21 1 3 83 0 2 41 chain 43805 chr12 133851895 + 94319681 94320234 LTR19B 566 + 0 566 64442 211 0 10 229 0 1 42 0 5 16 3 0 52 chain 8271 chr12 133851895 + 94327040 94327162 MER4B 649 + 499 644 169562 54 6 30 50 1 0 11 chain 21743 chr12 133851895 + 94336846 94337131 AluSc5 308 + 8 291 121231 110 2 0 18 8 5 6 0 3 141 chain 3931 chr12 133851895 + 94341205 94341274 MER34C_ 573 + 436 516 208411 12 4 0 29 0 5 11 2 12 11 chain 50512 chr12 133851895 + 94352998 94353665 L1PB3 3668 + 1422 2091 58640 211 17 18 71 0 1 368 chain 24534 chr12 133851895 + 94374052 94374339 AluSc 308 - 10 297 107345 287 chain 6496 chr12 133851895 + 94378892 94378966 L1PA5 6144 - 0 74 181285 74 chain 136579 chr12 133851895 + 94381752 94383231 L1PA2 6032 + 4553 6032 26724 1479 chain 132047 chr12 133851895 + 94391702 94393572 L1PA16 3655 + 1728 3561 27626 67 1 0 69 4 5 132 7 3 5 0 3 79 0 2 19 6 4 92 6 9 454 18 17 92 1 0 211 1 0 106 52 19 84 2 1 88 1 0 186 14 12 4 0 1 69 chain 13607 chr12 133851895 + 94395802 94395983 MER21B 843 + 15 195 145951 20 0 1 48 3 1 110 chain 465339 chr12 133851895 + 94396118 94402237 L1PA7 6471 - 3 6466 8207 11 1 0 148 11 12 160 0 1 126 0 24 365 2 0 7 19 9 111 0 1 352 12 26 629 0 1 14 0 8 445 0 1 6 1 0 10 0 1 503 1 0 4 0 2 5 8 2 125 0 10 8 16 6 92 4 0 6 0 5 339 0 4 42 3 0 207 1 2 273 15 14 254 0 2 1010 19 40 17 11 12 113 14 14 20 1 76 57 5 15 112 15 14 34 43 240 45 44 49 16 15 14 192 chain 23811 chr12 133851895 + 94414836 94415129 AluSg7 307 - 12 307 111411 15 7 8 140 0 1 131 chain 76396 chr12 133851895 + 94443833 94444699 L1PA6 6164 + 5090 5957 45267 172 0 1 694 chain 2730 chr12 133851895 + 94451859 94451894 MER58C 217 - 24 58 229740 24 1 0 10 chain 514316 chr12 133851895 + 94458062 94464175 L1PA6 6164 + 1 6162 5742 235 0 2 134 0 5 141 0 2 47 1 0 220 0 17 444 0 1 11 18 3 189 0 1 478 0 1 327 13 12 61 0 2 11 0 1 429 0 5 386 0 4 19 0 1 24 0 1 73 4 8 44 0 1 60 0 1 121 1 0 1129 0 5 80 0 1 324 0 1 768 0 1 310 0 9 11 chain 20251 chr12 133851895 + 94479539 94479830 MER2 342 + 16 319 126374 52 2 3 7 0 5 30 1 0 25 0 8 87 7 6 80 chain 39437 chr12 133851895 + 94481612 94482044 L1PA4 6152 + 5718 6150 70106 432 chain 14111 chr12 133851895 + 94488759 94488962 Tigger2a 444 - 175 379 144173 37 0 1 84 9 0 7 1 10 65 chain 4063 chr12 133851895 + 94501091 94501186 MIR 256 + 103 222 206430 38 1 0 5 0 7 9 28 46 14 chain 15313 chr12 133851895 + 94504175 94504494 MER1B 344 + 0 344 140449 18 68 70 140 33 57 39 1 0 20 chain 242224 chr12 133851895 + 94523683 94526538 L1PA5 6144 - 0 2824 16660 153 1 2 161 0 10 8 35 0 190 0 1 239 1 0 86 6 1 170 0 1 401 6 3 437 0 2 359 4 5 551 4 1 43 chain 26244 chr12 133851895 + 94587713 94588121 MSTA 426 - 15 426 99037 55 0 1 98 54 52 48 10 14 143 chain 102744 chr12 133851895 + 94606111 94607644 L1PA6 6164 - 7 1213 36066 324 0 1 47 327 0 144 2 1 325 1 2 321 1 0 41 chain 13688 chr12 133851895 + 94638398 94638584 MER30B 195 - 0 195 145642 9 0 1 96 5 13 76 chain 29247 chr12 133851895 + 94669347 94669659 AluYa5 310 + 0 310 87811 123 2 0 187 chain 3080 chr12 133851895 + 94685752 94685786 L1MB8 1703 - 175 209 223323 34 chain 29959 chr12 133851895 + 94737246 94737568 AluYb8 318 - 0 318 84944 195 4 0 123 chain 6256 chr12 133851895 + 94739096 94739349 MER21A 919 + 21 166 183124 35 145 46 34 0 3 17 12 0 10 chain 14302 chr12 133851895 + 94743093 94743262 HSMAR1 1287 + 1114 1287 143557 35 0 4 134 chain 40975 chr12 133851895 + 94749359 94749849 MER9a1 513 + 0 513 67944 212 0 1 31 1 23 246 chain 107797 chr12 133851895 + 94751170 94752516 HERVK9-int 4720 + 36 1374 34781 13 13 9 66 1 0 8 1 0 29 1 0 829 2 1 34 2 1 91 1 2 255 chain 38475 chr12 133851895 + 94752592 94753084 MER9a1 513 + 0 513 71483 11 1 2 199 0 1 36 0 22 141 8 5 96 chain 3899 chr12 133851895 + 94761056 94761102 L1MC4a 1092 + 612 658 208868 46 chain 23102 chr12 133851895 + 94762959 94763258 AluY 311 + 11 311 115130 106 1 0 17 0 1 4 4 5 167 chain 19933 chr12 133851895 + 94765761 94766029 AluSg7 307 - 21 289 127356 93 1 0 40 22 23 112 chain 2646 chr12 133851895 + 94777147 94777230 MER47A 366 + 0 84 231090 29 37 38 17 chain 489315 chr12 133851895 + 94783278 94789118 L1PA6 6164 + 1 6162 7397 116 0 1 77 0 1 4 1 0 36 0 2 37 1 2 241 0 2 47 1 0 170 14 13 37 5 22 507 0 1 637 1 0 363 14 8 50 0 3 31 12 5 324 11 12 520 0 15 417 0 1 426 0 2 459 0 2 190 3 1 509 0 4 244 0 1 154 0 286 181 chain 79698 chr12 133851895 + 94792122 94793152 MER11A 1151 + 0 1151 43735 85 0 91 24 1 0 95 2 1 19 1 0 11 0 2 152 16 17 171 11 14 156 1 0 14 0 23 41 2 0 54 1 2 98 0 6 75 chain 13430 chr12 133851895 + 94814283 94814477 MER30 238 + 46 238 146574 54 15 13 125 chain 5032 chr12 133851895 + 94824818 94824890 L1MA4A 3247 + 87 160 194810 12 1 0 5 0 2 54 chain 28873 chr12 133851895 + 94835713 94836291 L1PB1 5432 + 4921 5430 89573 113 0 1 68 5 2 11 5 0 22 1 0 6 1 0 14 50 10 51 15 17 43 2 1 15 1 0 5 18 8 18 4 2 4 1 0 14 3 1 23 1 0 22 1 0 12 1 0 14 1 0 8 1 0 4 chain 58503 chr12 133851895 + 94848128 94848912 LTR12_ 688 + 7 688 53701 497 103 0 184 chain 23988 chr12 133851895 + 94850210 94850586 THE1D 372 - 0 372 110394 147 1 0 25 14 16 52 1 5 6 1 0 35 0 4 8 30 18 56 chain 9019 chr12 133851895 + 94855062 94855185 AluSx 319 + 8 133 165496 99 5 7 19 chain 94630 chr12 133851895 + 94877333 94878372 L1PA3long 6157 - 1847 2887 38178 365 0 1 674 chain 168215 chr12 133851895 + 94878372 94880215 L1PA3long 6157 + 4313 6156 22261 15 0 1 1061 1 0 766 chain 14621 chr12 133851895 + 94883472 94883836 MSTD 398 - 0 398 142518 142 155 189 37 2 3 6 1 0 21 chain 46897 chr12 133851895 + 94886507 94887438 MER41B 635 - 23 635 61310 100 1 0 44 8 7 332 0 1 7 1 0 24 313 0 72 5 1 24 chain 50551 chr12 133851895 + 94888940 94889574 MER41B 635 + 0 635 58610 130 0 1 504 chain 96198 chr12 133851895 + 94895358 94896590 THE1B-int 1605 - 7 1282 37770 114 5 8 524 1 2 81 0 5 159 14 17 6 0 3 144 0 3 76 1 26 107 chain 9857 chr12 133851895 + 94902170 94902314 MSTB 430 - 14 162 161304 99 5 10 16 1 0 23 chain 8827 chr12 133851895 + 94982913 94983025 MER30 238 + 129 238 166511 67 3 0 42 chain 72247 chr12 133851895 + 95000334 95001367 MER11A 1151 - 0 1151 47359 15 0 1 20 0 4 26 1 0 87 5 7 97 0 32 19 0 27 69 0 4 11 1 4 23 1 2 12 6 9 129 8 21 31 6 7 164 0 2 15 0 1 7 0 11 60 0 4 132 11 19 24 10 12 43 chain 22173 chr12 133851895 + 95019710 95020067 THE1D 372 - 0 372 119479 32 1 0 106 65 69 90 0 10 51 0 2 12 chain 22625 chr12 133851895 + 95074575 95074924 THE1B 368 + 0 368 117457 44 9 24 13 1 2 56 31 33 29 0 2 90 1 0 75 chain 34309 chr12 133851895 + 95088607 95089119 MER1A 529 + 42 529 77190 46 16 0 119 1 2 77 5 4 112 3 0 53 24 18 56 chain 4482 chr12 133851895 + 95094431 95094497 MLT1G1 539 - 60 124 200996 20 1 0 29 1 0 15 chain 6168 chr12 133851895 + 95096521 95096587 L1HS 6032 + 5966 6032 183813 66 chain 20592 chr12 133851895 + 95100173 95100469 THE1B 368 - 59 368 125328 56 17 26 13 2 6 6 0 1 32 1 0 169 chain 13188 chr12 133851895 + 95124349 95124526 THE1B 368 - 193 368 147516 6 1 0 19 1 0 150 chain 28686 chr12 133851895 + 95135919 95136221 AluYk11 308 - 6 308 90382 302 chain 2354 chr12 133851895 + 95136711 95136794 L1MB2 1706 - 15 124 234754 25 44 70 14 chain 14733 chr12 133851895 + 95148877 95149195 L1PB1 5432 + 5114 5420 142163 24 2 1 7 1 0 10 2 0 3 2 0 9 2 0 49 6 5 14 1 0 35 10 9 16 14 1 30 1 0 4 3 1 14 2 0 24 2 1 13 0 18 18 chain 17833 chr12 133851895 + 95152234 95152572 L1PB1 5432 - 9 316 133294 5 1 0 14 1 0 13 1 0 21 1 0 20 6 4 15 1 0 4 2 0 29 14 2 15 1 0 37 8 7 16 3 2 52 2 0 8 5 1 11 1 0 31 chain 14810 chr12 133851895 + 95185463 95185689 L1PA8 5853 + 5631 5853 141910 47 24 22 35 8 7 18 1 0 93 chain 37399 chr12 133851895 + 95210918 95211369 LTR2 463 + 0 463 72952 55 0 3 168 0 5 184 0 4 44 chain 7135 chr12 133851895 + 95212231 95212349 MER50 708 + 6 129 176511 45 2 3 6 2 0 19 4 9 15 0 1 25 chain 5570 chr12 133851895 + 95213948 95214012 THE1C 375 - 311 375 189375 64 chain 23618 chr12 133851895 + 95215113 95215392 AluSc5 308 + 5 283 112485 111 3 2 165 chain 526147 chr12 133851895 + 95216595 95222788 L1PA5 6144 + 0 6137 4575 135 17 31 571 1 0 55 5 15 64 0 1 297 9 0 93 15 16 259 1 0 160 1 0 571 0 1 907 3 0 1137 0 3 25 0 4 283 1 0 90 6 3 20 16 0 151 1 2 400 1 0 168 2 0 5 20 0 180 33 0 490 chain 6882 chr12 133851895 + 95232867 95232974 MSTB1 431 - 110 218 178336 59 4 5 22 1 3 5 2 0 14 chain 9800 chr12 133851895 + 95262194 95262314 Tigger1 2417 + 1039 1159 161598 120 chain 24675 chr12 133851895 + 95263153 95263451 AluSp 311 + 5 303 106582 298 chain 117445 chr12 133851895 + 95277445 95278889 L1P2 5180 + 1931 3377 31982 644 0 4 202 7 10 239 9 1 146 1 0 53 0 4 143 chain 25069 chr12 133851895 + 95289043 95289346 AluSq2 311 - 8 311 104465 303 chain 42285 chr12 133851895 + 95297576 95298092 L1PA5 6144 - 2 511 66290 138 6 0 198 0 1 40 0 1 126 3 0 5 chain 43302 chr12 133851895 + 95299494 95300006 MER9a1 513 + 0 513 65047 212 0 1 300 chain 2463 chr12 133851895 + 95307661 95307702 LTR67B 553 - 449 491 233555 18 3 4 20 chain 12920 chr12 133851895 + 95334201 95334812 MLT1A0 366 + 23 325 148561 4 1 0 4 1 0 17 5 6 29 1 0 47 7 8 26 393 84 26 0 1 50 chain 29428 chr12 133851895 + 95337838 95338155 AluYb8 318 - 1 318 86944 317 chain 28935 chr12 133851895 + 95344064 95344366 AluYa5 310 - 8 310 89297 302 chain 26006 chr12 133851895 + 95382310 95382686 MER48 407 + 0 407 99990 72 0 11 69 28 46 151 5 7 51 chain 6330 chr12 133851895 + 95391675 95391793 MER20 218 + 21 176 182538 50 1 0 4 30 68 33 chain 160604 chr12 133851895 + 95391805 95393888 L1PB2 3958 + 1767 3838 23252 99 4 1 58 0 4 399 0 1 152 3 0 443 1 0 239 0 1 19 0 6 118 2 0 56 1 0 8 1 0 68 2 0 12 5 0 94 1 0 72 1 0 64 1 0 69 2 0 24 3 2 62 chain 4757 chr12 133851895 + 95394666 95394724 L1PA6 6164 + 6098 6161 197832 49 0 5 9 chain 19394 chr12 133851895 + 95405676 95405996 THE1C 375 - 42 375 128963 138 13 13 71 35 47 11 5 6 47 chain 32545 chr12 133851895 + 95448533 95448893 SVA_D 2077 - 1 361 79951 360 chain 2902 chr12 133851895 + 95519025 95519059 U2 167 - 133 167 226998 34 chain 20809 chr12 133851895 + 95534150 95534408 AluSq2 311 + 36 299 124572 17 0 4 76 0 1 165 chain 17525 chr12 133851895 + 95539133 95539451 MER31A 484 + 53 407 134196 48 21 64 48 4 0 43 1 0 5 17 18 20 16 13 95 chain 24604 chr12 133851895 + 95543809 95544102 AluSp 311 - 18 311 106974 165 1 0 43 0 1 84 chain 91959 chr12 133851895 + 95549567 95550638 MER11C 1089 + 0 1073 38981 101 1 0 490 0 1 80 1 0 104 0 1 110 4 5 153 0 1 27 chain 16915 chr12 133851895 + 95573652 95573869 AluSp 311 + 80 296 135809 196 6 5 15 chain 20195 chr12 133851895 + 95575458 95575695 AluY 311 + 11 258 126540 189 0 10 48 chain 22063 chr12 133851895 + 95619079 95619360 AluY 311 + 31 310 119949 99 2 0 180 chain 20829 chr12 133851895 + 95628060 95628369 AluSp 311 - 9 310 124509 89 7 5 80 3 0 3 2 0 41 18 17 66 chain 156065 chr12 133851895 + 95628462 95630244 SVA_D 2077 - 14 2067 23852 23 0 14 576 0 1 8 2 0 40 4 0 13 24 0 4 1 0 296 0 102 32 0 36 119 0 77 160 0 76 451 0 1 9 4 0 9 1 0 6 chain 6566 chr12 133851895 + 95669568 95669645 HY3 101 + 22 99 180730 77 chain 3941 chr12 133851895 + 95678449 95678497 MADE1 96 - 1 49 208248 48 chain 14716 chr12 133851895 + 95723644 95723858 Tigger1 2417 - 460 683 142218 48 10 11 10 0 1 109 0 3 14 1 5 22 chain 66751 chr12 133851895 + 95724528 95725443 MER41-int 2638 + 1723 2633 49755 13 0 1 165 1 0 7 1 2 8 1 0 114 2 0 61 3 0 7 3 1 85 5 4 186 0 1 4 22 21 51 0 1 33 0 1 37 0 1 106 chain 29161 chr12 133851895 + 95733597 95733907 AluYa5 310 - 0 310 88251 310 chain 24751 chr12 133851895 + 95738411 95738705 AluY 311 + 14 308 106163 118 0 1 141 5 4 30 chain 10672 chr12 133851895 + 95761026 95761226 L1PB1 5432 + 5241 5422 157518 40 1 0 15 3 0 6 15 7 17 3 1 5 1 0 14 2 0 46 1 0 12 1 0 18 chain 37626 chr12 133851895 + 95767760 95768169 L1PA3long 6157 + 5747 6155 72653 151 1 0 257 chain 127741 chr12 133851895 + 95773201 95774697 LTR12C 1709 + 0 1709 28634 266 0 1 31 0 23 403 0 188 199 1 0 6 2 0 107 0 4 481 chain 40931 chr12 133851895 + 95777768 95778256 LTR3B_ 500 + 15 500 67999 146 0 1 140 5 1 197 chain 39024 chr12 133851895 + 95782049 95782499 LTR2 463 + 0 463 70706 347 0 13 103 chain 7425 chr12 133851895 + 95832518 95832605 U6 107 - 6 93 174610 87 chain 41350 chr12 133851895 + 95838734 95839264 LTR12F 595 - 23 595 67470 192 0 1 164 0 9 14 15 46 42 0 1 103 chain 50084 chr12 133851895 + 95839264 95840124 HERVK22-int 3844 - 1828 3743 58955 29 0 1 5 1 0 111 2 0 165 0 2 76 83 82 208 0 1109 51 74 21 55 chain 3309 chr12 133851895 + 95842489 95842561 LTR12F 595 - 419 487 218795 28 24 20 20 chain 5166 chr12 133851895 + 95842891 95842951 LTR12F 595 - 535 595 193390 60 chain 464989 chr12 133851895 + 95845557 95851572 HERV9-int 5642 - 0 5631 8221 17 8 2 15 35 12 11 1 0 60 1 0 27 3 1 35 14 12 30 0 5 185 1 0 21 0 1 218 7 0 465 0 5 183 0 6 621 1 0 516 0 1 169 1 0 954 0 8 476 1 0 8 11 12 230 0 1 1 338 0 96 0 1 111 0 1 11 3 0 11 0 1 253 3 1 132 6 0 18 21 0 397 0 1 289 chain 28928 chr12 133851895 + 95849883 95850221 HERV9-int 5642 - 2826 3164 85842 338 chain 39816 chr12 133851895 + 95851603 95852103 LTR12F 595 - 0 595 69601 380 6 15 14 0 86 100 chain 3916 chr12 133851895 + 95856513 95856557 MER65A 464 - 420 464 208616 44 chain 23033 chr12 133851895 + 95891631 95891923 AluY 311 + 10 297 115479 116 6 0 8 8 9 154 chain 27139 chr12 133851895 + 95913208 95913507 AluYc3 301 - 5 301 95795 184 3 0 112 chain 39132 chr12 133851895 + 95954915 95955377 LTR2 463 - 0 463 70563 181 0 1 281 chain 52011 chr12 133851895 + 95991443 95992036 L1PA5 6144 - 0 592 57620 11 3 1 135 0 1 444 chain 3852 chr12 133851895 + 96011496 96011559 HY1 111 + 32 110 209610 24 11 26 28 chain 30670 chr12 133851895 + 96022689 96023125 MER4A1 472 - 0 472 83093 58 7 18 125 3 24 217 12 16 14 chain 22212 chr12 133851895 + 96028369 96028727 THE1B 368 - 0 368 119292 58 0 4 57 17 25 10 0 4 10 30 23 60 5 6 111 chain 53474 chr12 133851895 + 96071456 96072129 L1PA8 5853 + 5188 5853 56703 376 1 0 47 3 1 66 12 10 4 1 0 48 2 1 22 1 0 90 chain 50373 chr12 133851895 + 96139769 96140328 LTR6B 557 + 0 557 58731 401 2 0 156 chain 28963 chr12 133851895 + 96142639 96143062 LTR7Y 441 + 0 441 89165 97 17 8 47 64 91 198 chain 297956 chr12 133851895 + 96143062 96146977 HERVH-int 3825 + 0 3825 13532 212 0 11 309 197 0 38 1 0 9 2 1 9 4 0 14 7 1 14 1 0 13 66 0 67 0 20 11 2 1 49 1 0 444 15 0 462 91 31 393 0 2 225 5 7 152 0 13 612 1 211 250 14 19 225 chain 4242 chr12 133851895 + 96143588 96143675 HERVH-int 3825 + 532 763 203989 38 1 0 8 0 149 12 13 9 15 chain 5519 chr12 133851895 + 96143676 96143742 HERVH-int 3825 + 436 500 189858 53 2 0 11 chain 3178 chr12 133851895 + 96143742 96143780 HERVH-int 3825 + 438 476 189857 38 chain 4446 chr12 133851895 + 96143892 96143949 HERVH-int 3825 + 669 725 190418 28 1 0 28 chain 4508 chr12 133851895 + 96145047 96145096 HERVH-int 3825 + 1636 1685 200700 49 chain 29853 chr12 133851895 + 96148235 96148668 LTR7Y 441 + 0 441 85265 103 9 0 57 67 83 80 0 1 117 chain 537431 chr12 133851895 + 96168983 96175087 L1PA5 6144 + 3 6140 3249 679 0 20 1562 1 2 177 9 4 284 0 5 712 0 1 232 0 3 495 0 3 559 0 7 936 0 2 279 4 0 16 18 18 141 chain 11415 chr12 133851895 + 96203789 96203950 L1PA8 5853 - 0 158 154616 92 2 1 19 2 1 12 1 0 33 chain 13058 chr12 133851895 + 96204506 96204689 MER30 238 - 0 174 148003 48 4 1 83 6 0 42 chain 66720 chr12 133851895 + 96214612 96215396 L1PA6 6164 - 11 823 49773 6 1 0 19 0 28 78 1 0 4 1 3 674 chain 23395 chr12 133851895 + 96219403 96219705 AluSg7 307 + 3 307 113677 105 0 1 22 24 25 151 chain 27712 chr12 133851895 + 96223744 96224171 MLT2A2 560 - 0 560 93999 147 2 111 18 2 12 45 46 59 11 0 1 156 chain 2920 chr12 133851895 + 96229778 96229809 L1PA8 5853 - 0 31 226682 31 chain 174599 chr12 133851895 + 96233617 96236128 SVA_E 1901 - 0 1886 21527 899 273 0 79 349 0 87 1 0 19 1 0 672 1 0 130 chain 1594 chr12 133851895 + 96234526 96234565 SVA_E 1901 - 734 772 130679 26 1 0 12 chain 8799 chr12 133851895 + 96234565 96234789 SVA_E 1901 - 519 597 83854 14 4 3 16 0 1 43 146 0 1 chain 1272 chr12 133851895 + 96234642 96234701 SVA_E 1901 - 1021 1080 129193 59 chain 2766 chr12 133851895 + 96234701 96234764 SVA_E 1901 - 606 668 126275 34 1 0 28 chain 1185 chr12 133851895 + 96234868 96234895 SVA_E 1901 - 754 781 126275 27 chain 7856 chr12 133851895 + 96234895 96235095 SVA_E 1901 - 654 806 83854 61 67 19 72 chain 2853 chr12 133851895 + 96234956 96235021 SVA_E 1901 - 841 907 126275 51 0 1 14 chain 1078 chr12 133851895 + 96235095 96235145 SVA_E 1901 - 1182 1232 129193 50 chain 1941 chr12 133851895 + 96235182 96235216 SVA_E 1901 - 772 806 133358 34 chain 7475 chr12 133851895 + 96251182 96251365 MER51A 677 + 463 654 174308 27 54 52 45 8 19 7 1 0 41 chain 54642 chr12 133851895 + 96270618 96271261 PABL_A 660 + 0 653 55942 44 1 0 40 0 9 141 1 3 416 chain 140567 chr12 133851895 + 96300623 96302230 SVA_D 2077 - 21 2029 26058 514 0 225 246 0 184 126 3 0 21 14 17 276 21 0 360 0 11 21 0 2 5 chain 13981 chr12 133851895 + 96304138 96304341 L1PA17 2846 + 1653 1855 144648 118 15 14 70 chain 33873 chr12 133851895 + 96312874 96313310 MER57A1 433 - 0 433 77823 98 0 2 48 0 2 134 1 0 26 0 1 81 7 0 41 chain 24788 chr12 133851895 + 96315110 96315483 THE1D 372 - 11 370 105955 26 1 0 142 3 6 67 0 3 42 4 14 15 29 0 44 chain 544631 chr12 133851895 + 96317323 96323342 L1PA3long 6157 - 1 6157 2123 842 0 4 2916 0 4 1486 0 128 610 12 13 153 chain 165960 chr12 133851895 + 96340432 96342928 SVA_F 1814 + 11 1814 22519 888 189 0 49 3 18 233 375 0 71 144 0 544 chain 4639 chr12 133851895 + 96341357 96341452 SVA_F 1814 + 937 1046 107979 10 1 15 84 chain 3944 chr12 133851895 + 96341452 96341507 SVA_F 1814 + 646 898 208213 13 0 196 25 0 1 17 chain 21168 chr12 133851895 + 96341794 96342070 SVA_F 1814 + 974 1201 97616 133 49 0 94 chain 7616 chr12 133851895 + 96342070 96342156 SVA_F 1814 + 1103 1187 166346 67 2 0 17 chain 8709 chr12 133851895 + 96342240 96342335 SVA_F 1814 + 1094 1186 141221 83 3 0 9 chain 4192 chr12 133851895 + 96342337 96342383 SVA_F 1814 + 1186 1232 204664 46 chain 21010 chr12 133851895 + 96360765 96361126 THE1B 368 - 2 368 123876 35 0 1 90 1 0 10 1 0 4 21 28 25 23 22 84 1 3 44 10 8 12 chain 116666 chr12 133851895 + 96362728 96364415 LTR12C 1709 + 0 1709 32238 104 5 4 402 3 4 274 273 161 162 11 10 96 7 11 265 0 131 85 chain 24890 chr12 133851895 + 96363519 96363782 AluYg6 310 - 11 274 105411 263 chain 21652 chr12 133851895 + 96427339 96427594 L1PA7 6471 - 2 258 121563 160 1 2 94 chain 3638 chr12 133851895 + 96429798 96429837 tRNA-Asp-GAY 44 + 0 39 213009 39 chain 44001 chr12 133851895 + 96436062 96436632 PABL_A 660 + 10 653 64207 6 0 1 65 1 10 83 2 86 103 0 5 183 26 0 101 chain 14057 chr12 133851895 + 96437255 96437406 AluYf4 310 + 152 303 144358 151 chain 8941 chr12 133851895 + 96474601 96474714 MLT1C 463 + 345 458 165918 113 chain 2832 chr12 133851895 + 96475727 96475762 LTR29 598 - 421 462 228194 6 0 6 29 chain 32558 chr12 133851895 + 96480148 96480653 THE1D-int 1627 + 0 404 79934 15 0 2 20 1 0 323 102 0 44 chain 29268 chr12 133851895 + 96480655 96480962 AluYa5 310 - 3 310 87700 307 chain 11953 chr12 133851895 + 96482413 96482562 THE1D 372 + 224 372 152397 116 1 0 32 chain 126967 chr12 133851895 + 96502499 96504106 LTR12C 1709 + 0 1709 28823 336 0 43 273 0 119 66 1 0 112 48 0 163 1 0 5 11 9 98 11 4 399 1 0 82 chain 4057 chr12 133851895 + 96503287 96503335 LTR12C 1709 + 1109 1156 113586 3 1 0 44 chain 20410 chr12 133851895 + 96521816 96522467 THE1B 368 - 0 368 125863 56 7 6 66 361 78 45 8 9 108 chain 63361 chr12 133851895 + 96532754 96533728 L1PB1 5432 - 10 964 51291 18 1 0 12 1 0 22 94 77 12 1 0 44 22 20 36 1 4 9 2 0 8 8 4 13 1 0 8 2 0 21 3 0 11 3 0 173 0 1 123 0 7 170 0 1 88 0 5 67 chain 7829 chr12 133851895 + 96543526 96543779 MLT1B 390 - 25 260 172133 82 113 97 5 2 0 8 3 0 7 6 9 27 chain 69654 chr12 133851895 + 96551862 96552692 SVA_D 2077 + 18 2075 48548 20 17 5 10 0 8 99 0 656 30 1 576 653 chain 38457 chr12 133851895 + 96577792 96578311 LTR12F 595 + 0 587 71508 100 0 85 17 22 13 111 8 0 261 chain 8992 chr12 133851895 + 96582579 96582773 L1MB2 1706 + 1442 1627 165647 48 28 33 52 20 8 15 1 0 11 3 2 16 chain 6125 chr12 133851895 + 96623026 96623113 MLT1C 463 - 5 90 184228 39 2 0 46 chain 5452 chr12 133851895 + 96647066 96647129 Tigger1 2417 + 2037 2100 190516 63 chain 30334 chr12 133851895 + 96649359 96649742 MER4E 760 - 10 760 83835 159 11 376 169 0 1 27 0 1 17 chain 14667 chr12 133851895 + 96683705 96683925 MER30 238 - 0 238 142369 45 1 4 36 16 35 11 4 0 107 chain 8838 chr12 133851895 + 96708213 96708323 MER85 139 + 0 121 166441 30 0 1 58 0 10 22 chain 555688 chr12 133851895 + 96709720 96715749 L1PA2 6032 + 0 6031 751 149 3 1 6 0 2 549 1 0 576 0 9 1768 0 1 1040 0 4 94 11 0 1832 chain 10193 chr12 133851895 + 96820382 96820527 L1MB3 1562 - 177 320 159658 34 1 0 8 1 0 42 1 2 5 1 0 52 chain 46315 chr12 133851895 + 96825427 96826500 PABL_A 660 + 35 652 61759 115 0 1 127 4 5 39 0 1 9 479 0 124 0 20 176 chain 63331 chr12 133851895 + 96834206 96834900 L1PA5 6144 - 585 1279 51308 694 chain 51147 chr12 133851895 + 96834900 96835472 L1PA5 6144 + 5570 6142 58221 572 chain 23184 chr12 133851895 + 96860351 96860622 AluSp 311 + 17 288 114754 271 chain 22922 chr12 133851895 + 96888519 96888797 AluSc 308 - 25 303 116004 278 chain 15903 chr12 133851895 + 96893787 96894060 L1MC1 2226 + 1785 2045 138641 54 28 25 23 7 1 29 1 0 58 6 3 67 chain 11523 chr12 133851895 + 96938320 96938467 MER39 703 + 282 430 154202 56 0 2 9 1 0 81 chain 13301 chr12 133851895 + 96939024 96939184 L1PA7 6471 + 6309 6469 147073 160 chain 3031 chr12 133851895 + 96939504 96939539 MER39B 650 + 415 450 224366 35 chain 27981 chr12 133851895 + 96985385 96985686 AluYg6 310 + 0 298 93067 131 3 0 167 chain 500948 chr12 133851895 + 96992793 96998889 L1PA6 6164 - 4 6164 6787 620 6 7 205 0 3 153 0 5 102 1 3 229 0 13 177 1 0 177 0 28 375 0 1 15 0 2 199 0 1 148 0 1 173 1 0 333 0 1 235 0 1 627 0 1 414 0 1 368 0 1 448 0 3 158 1 2 20 5 9 79 0 17 83 0 1 8 3 0 139 8 7 71 0 1 46 19 0 449 chain 529817 chr12 133851895 + 97004203 97010284 L1PA5 6144 + 3 6128 4209 117 0 14 934 5 3 5 0 2 244 0 1 42 19 11 240 2 3 97 0 5 529 1 0 84 0 19 420 1 2 45 0 1 345 0 1 286 0 6 890 0 4 275 1 0 1177 0 1 322 chain 18701 chr12 133851895 + 97032691 97032901 L1PA4 6152 - 2984 3194 130427 210 chain 262768 chr12 133851895 + 97032901 97035855 L1PA4 6152 + 3182 6140 15549 757 5 6 409 0 4 819 1 0 963 chain 110270 chr12 133851895 + 97039032 97040282 L1PA4 6152 + 4294 5547 34136 270 1 2 69 1 0 542 1 0 127 0 4 239 chain 53983 chr12 133851895 + 97040286 97040890 L1PA4 6152 + 5547 6151 56377 604 chain 23762 chr12 133851895 + 97050162 97050448 AluSp 311 - 19 301 111691 97 4 0 185 chain 4000 chr12 133851895 + 97053217 97053399 ORSL 269 + 50 235 207382 18 2 3 38 109 111 15 chain 24221 chr12 133851895 + 97059478 97059848 L1PA13 3608 - 120 480 109086 22 1 0 13 1 0 5 2 0 4 2 0 48 2 0 10 1 0 50 1 0 63 2 0 88 0 3 16 8 7 31 chain 99628 chr12 133851895 + 97068622 97069727 L1PA4 6152 + 4897 6002 36878 1105 chain 12342 chr12 133851895 + 97069729 97069867 L1PA4 6152 + 6005 6143 150852 138 chain 4765 chr12 133851895 + 97071087 97071146 MLT1A0 366 + 289 348 197758 59 chain 5653 chr12 133851895 + 97106514 97106590 L1MA4 2864 - 220 295 188533 5 1 0 70 chain 557499 chr12 133851895 + 97117460 97123615 L1PA3long 6157 - 2 6156 557 332 1 2 38 1 3 453 0 1 1079 0 1 767 1 2 3099 13 7 40 1 0 330 chain 27533 chr12 133851895 + 97139056 97139475 L1PA11 4918 - 351 758 94565 13 1 0 15 31 22 9 4 0 20 1 0 16 7 5 73 2 1 8 0 3 45 0 3 174 chain 25425 chr12 133851895 + 97165159 97165441 AluYk4 311 + 11 293 102576 282 chain 52708 chr12 133851895 + 97186852 97187724 L1PB1 5432 - 10 841 57119 21 1 0 9 1 0 22 1 0 24 67 65 41 6 4 15 2 1 52 2 0 9 5 1 14 1 0 10 1 0 18 17 0 11 1 2 106 7 2 11 0 1 207 20 16 55 0 2 78 3 0 34 chain 96244 chr12 133851895 + 97187724 97189035 L1PBa 3878 - 2403 3713 37750 135 1 0 134 3 0 6 2 5 68 35 35 98 0 3 17 2 1 230 0 1 217 2 1 290 2 1 20 1 0 48 chain 54344 chr12 133851895 + 97196431 97197164 L1PA8 5853 - 0 716 56135 66 26 5 21 2 1 16 1 0 54 1 0 11 2 1 70 2 0 38 1 2 4 1 0 317 5 6 34 0 9 61 chain 149853 chr12 133851895 + 97208329 97210163 L1PA8 5853 - 0 1819 24634 92 6 5 15 2 1 50 1 0 11 2 1 70 2 0 46 1 0 41 1 0 14 0 1 16 0 1 450 0 1 28 2 0 117 13 6 553 1 0 300 chain 118538 chr12 133851895 + 97249058 97250634 THE1C-int 1605 - 0 1587 31604 54 8 9 515 0 1 69 14 16 236 21 20 23 0 1 9 4 19 24 14 3 154 5 12 76 4 0 346 chain 27776 chr12 133851895 + 97250650 97251023 THE1C 375 - 0 375 93776 25 1 0 155 12 11 45 0 4 135 chain 3006 chr12 133851895 + 97255171 97255205 MER20 218 + 159 193 224925 34 chain 27849 chr12 133851895 + 97286061 97286408 THE1A 353 + 6 351 93527 82 1 0 22 1 0 241 chain 131319 chr12 133851895 + 97286411 97287985 THE1A-int 1579 + 1 1572 27795 126 0 1 182 4 0 1262 chain 26655 chr12 133851895 + 97287991 97288345 THE1A 353 + 0 353 97469 103 20 19 231 chain 29410 chr12 133851895 + 97296695 97297005 AluYa5 310 - 0 310 87023 310 chain 46296 chr12 133851895 + 97310045 97310542 L1PA2 6032 - 13 510 61774 497 chain 29133 chr12 133851895 + 97372263 97372572 AluYa5 310 - 1 310 88394 309 chain 7967 chr12 133851895 + 97373308 97373407 HY3 101 - 2 101 171234 99 chain 23151 chr12 133851895 + 97395355 97395636 L1PA7 6471 - 10 290 114890 141 13 12 127 chain 21454 chr12 133851895 + 97430836 97431104 AluSz6 309 + 42 309 122315 91 1 0 176 chain 2784 chr12 133851895 + 97446863 97446897 L1MA8 2339 + 2299 2333 228939 34 chain 9926 chr12 133851895 + 97464571 97464699 MER2 342 - 81 210 160940 8 0 1 120 chain 25751 chr12 133851895 + 97478449 97478806 THE1B 368 - 0 368 101082 74 1 0 94 2 0 26 4 3 106 6 21 44 chain 300520 chr12 133851895 + 97496074 97500000 L1PB1 5432 - 13 3880 13394 15 1 0 13 1 0 21 1 0 23 20 20 4 0 1 10 20 10 6 3 0 16 1 0 44 1 0 17 8 7 44 8 0 10 6 2 9 1 0 9 1 0 24 1 0 9 1 2 299 1 0 96 3 4 84 3 0 122 11 13 104 5 4 105 0 3 313 1 0 183 0 1 46 0 5 570 29 0 4 11 0 55 0 3 269 3 1 883 18 22 200 0 2 41 0 1 51 1 0 67 chain 93024 chr12 133851895 + 97508012 97509035 L1PA3long 6157 + 5121 6146 38650 893 0 1 71 0 1 59 chain 29322 chr12 133851895 + 97554744 97555055 AluYa5 310 - 0 310 87427 192 1 0 118 chain 32643 chr12 133851895 + 97555609 97556022 MER57A1 433 + 0 433 79775 37 0 20 108 1 0 111 0 1 156 chain 2998 chr12 133851895 + 97556613 97556646 MLT1L 557 - 1 34 225062 33 chain 29986 chr12 133851895 + 97585168 97585599 LOR1b 457 + 9 457 84849 22 3 11 39 2 0 63 3 1 9 28 41 262 chain 5405 chr12 133851895 + 97597068 97597135 U3 216 + 0 70 190935 32 0 3 35 chain 398478 chr12 133851895 + 97597844 97603322 L1PB1 5432 + 12 5420 10156 7 1 0 525 2 1 42 0 4 313 0 1 5 1 0 118 10 11 39 0 1 200 1 0 109 1 2 5 0 2 6 0 8 52 0 1 78 0 1 167 1 0 6 0 4 136 3 0 391 1 0 248 24 8 7 0 5 311 8 5 11 18 26 51 2 0 95 15 1 196 2 1 207 0 1 9 1 2 45 0 1 5 7 11 28 4 5 44 8 9 33 0 2 97 22 21 36 1 11 59 0 1 142 0 7 6 25 21 188 0 1 276 6 12 129 1 0 182 2 4 296 13 0 11 49 0 24 1 0 9 1 0 11 5 1 8 2 0 53 18 16 45 1 0 15 25 12 19 22 17 26 1 0 17 5 4 13 1 0 16 chain 29367 chr12 133851895 + 97621551 97621860 AluYa5 310 - 1 310 87215 309 chain 19466 chr12 133851895 + 97682297 97682569 THE1A 353 - 0 288 128762 137 3 0 6 0 2 98 12 29 16 chain 46553 chr12 133851895 + 97682577 97683132 THE1A-int 1579 - 1025 1579 61555 52 1 0 502 chain 10076 chr12 133851895 + 97683132 97683265 THE1A 353 - 0 131 160194 18 1 0 68 1 0 45 chain 45937 chr12 133851895 + 97692664 97693221 MLT2A2 560 - 2 560 62096 41 1 0 88 0 1 224 0 1 203 chain 43510 chr12 133851895 + 97708796 97709306 LTR10F 562 - 0 562 64801 160 1 0 171 3 56 175 chain 12434 chr12 133851895 + 97734384 97734635 MER2 342 - 82 328 150516 42 3 4 100 73 67 33 chain 540295 chr12 133851895 + 97743186 97749336 L1PA4 6152 - 1 6140 2773 253 1 0 1345 0 1 1199 0 3 182 1 0 1931 0 1 173 0 2 16 1 3 206 18 1 259 1 0 564 chain 5912 chr12 133851895 + 97763165 97763261 L1PB1 5432 + 5328 5418 186073 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 chain 23856 chr12 133851895 + 97764991 97765278 AluSp 311 + 9 289 111146 15 6 0 108 1 0 157 chain 18012 chr12 133851895 + 97794537 97794914 THE1D 372 - 0 372 132826 78 0 2 45 58 63 52 8 12 15 11 12 14 4 5 28 24 6 40 chain 42190 chr12 133851895 + 97814354 97814896 MER41A 554 - 0 546 66406 204 2 0 222 3 6 51 0 3 60 chain 15649 chr12 133851895 + 97845853 97846062 L1MA4 2864 - 1779 1985 139435 114 5 1 24 0 1 66 chain 6871 chr12 133851895 + 97849417 97849497 MER2 342 - 127 207 178422 80 chain 103575 chr12 133851895 + 97905719 97907080 LTR12C 1709 - 0 1709 35840 30 0 4 48 1 0 65 47 4 78 0 7 57 4 8 180 0 4 106 0 47 57 0 278 226 3 5 12 1 0 25 5 4 83 0 43 43 1 6 289 chain 20401 chr12 133851895 + 97943919 97944173 AluSp 311 + 32 285 125892 100 1 0 153 chain 7684 chr12 133851895 + 97971777 97971871 MADE1 96 - 0 96 173018 26 0 1 42 0 1 26 chain 459476 chr12 133851895 + 97975493 97981640 L1PA8 5853 + 50 5850 8424 22 2 0 10 1 0 6 59 20 15 15 21 158 2 6 121 0 1 298 0 2 5 10 7 551 0 1 380 0 1 51 0 1 147 3 4 481 0 1 480 0 5 23 0 1 8 6 5 564 309 0 53 5 0 201 0 13 125 0 1 218 1 5 948 2 0 74 3 4 7 1 0 208 0 1 223 47 8 27 1 0 46 2 0 71 2 1 13 1 0 43 0 17 7 1 0 90 chain 8804 chr12 133851895 + 97981888 97982000 MER3 215 + 4 116 166624 112 chain 269236 chr12 133851895 + 97996995 98000000 L1PA4 6152 - 1 3002 15220 339 1 0 21 0 1 463 0 1 619 6 0 928 0 1 628 chain 275997 chr12 133851895 + 98000000 98003135 L1P1 4361 - 1217 4360 14871 1923 1 2 1061 3 10 147 chain 550246 chr12 133851895 + 98044911 98050945 L1PA2 6032 - 1 6030 1411 845 0 4 2108 10 1 3071 chain 112459 chr12 133851895 + 98054836 98056352 THE1C-int 1605 - 6 1589 33550 42 0 1 105 0 1 102 0 1 6 14 15 262 0 1 197 30 31 109 1 2 51 2 0 71 1 2 144 8 15 249 0 54 122 chain 27455 chr12 133851895 + 98065620 98065966 THE1B 368 - 0 362 94799 172 1 3 24 1 0 110 0 15 38 chain 510429 chr12 133851895 + 98066361 98072869 L1PA6 6164 + 0 6162 6127 227 9 11 171 17 18 50 1 0 133 0 1 108 7 0 73 17 0 15 13 30 240 3 6 1163 7 3 84 0 1 354 0 1 83 1 0 4 0 2 18 1 0 61 326 0 26 14 0 48 0 2 488 9 0 314 11 1 411 3 0 350 0 2 150 1 0 550 0 13 101 0 3 176 0 1 660 1 0 9 chain 512869 chr12 133851895 + 98085102 98091216 L1PA5 6144 - 12 6144 5893 326 0 1 940 0 1 536 5 6 30 0 1 519 0 1 75 1 0 21 1 0 172 2 3 230 0 13 47 0 1 44 0 1 160 0 1 594 0 1 104 14 0 1134 9 0 161 3 0 423 1 2 164 3 0 6 1 0 243 0 12 10 0 14 135 chain 406607 chr12 133851895 + 98098532 98102968 L1PA2 6032 - 7 4444 9894 1836 0 1 2600 chain 95174 chr12 133851895 + 98111711 98112735 L1HS 6032 - 0 1024 38043 262 1 0 80 0 1 681 chain 10056 chr12 133851895 + 98115493 98115600 U6 107 + 0 107 160298 107 chain 182660 chr12 133851895 + 98115600 98117616 L1HS 6032 + 1199 3215 20720 2016 chain 537142 chr12 133851895 + 98117617 98123650 L1PA3long 6157 + 0 6157 3293 152 0 1 103 0 1 520 1 129 31 4 0 5074 6 0 81 6 10 55 chain 20757 chr12 133851895 + 98125412 98125673 AluSx 319 + 8 267 124767 120 2 0 139 chain 16447 chr12 133851895 + 98131945 98132138 L1PA4 6152 - 0 202 137074 12 0 9 181 chain 44915 chr12 133851895 + 98142974 98143586 MER4A1_ 611 + 0 611 63159 70 2 4 38 9 11 11 5 1 241 5 4 231 chain 23995 chr12 133851895 + 98157587 98157865 AluSc5 308 + 8 286 110358 278 chain 5824 chr12 133851895 + 98171553 98171624 MER41E 591 - 520 591 186910 71 chain 24898 chr12 133851895 + 98175389 98175764 THE1B 368 + 1 368 105359 12 2 0 34 0 1 54 14 15 52 31 24 100 1 0 75 chain 103579 chr12 133851895 + 98181890 98183118 L1PA7 6471 - 5 1238 35838 150 8 9 513 0 1 177 1 0 294 5 9 80 chain 333166 chr12 133851895 + 98200060 98204151 L1PA7 6471 + 2378 6467 12085 256 1 2 660 0 2 199 4 0 69 17 18 572 18 20 25 0 1 203 5 6 538 1 0 211 1 0 102 0 6 4 6 0 349 2 0 110 0 1 109 0 3 488 4 0 127 2 0 8 chain 4667 chr12 133851895 + 98206906 98206998 MLT1H 522 + 405 499 198893 15 2 0 10 7 8 10 2 0 5 0 5 41 chain 328086 chr12 133851895 + 98225219 98228899 L1PA4 6152 + 2465 6152 12274 706 1 0 143 0 1 2456 0 6 41 0 1 333 chain 20781 chr12 133851895 + 98229070 98229319 AluSg7 307 - 48 298 124676 127 0 1 122 chain 3544 chr12 133851895 + 98246047 98246089 L1PA8 5853 + 5637 5679 214645 42 chain 11522 chr12 133851895 + 98246107 98246273 L1PA8 5853 + 5688 5853 154205 52 3 2 18 1 0 76 3 4 13 chain 29200 chr12 133851895 + 98247783 98248092 AluYk12 309 - 0 309 88055 309 chain 3453 chr12 133851895 + 98257485 98257524 Tigger4a 237 + 101 140 216163 39 chain 369108 chr12 133851895 + 98259862 98264286 L1P2 5180 + 2 4960 11120 88 3 510 187 8 6 134 0 25 61 1 0 1374 7 8 897 1 0 202 0 1 194 2 0 496 1 2 271 0 3 336 1 3 160 chain 10256 chr12 133851895 + 98265170 98265298 MER85 139 - 0 138 159347 40 0 10 88 chain 143901 chr12 133851895 + 98272451 98274030 L1PA3long 6157 + 4346 5924 25496 961 1 0 617 chain 19538 chr12 133851895 + 98274033 98274252 L1PA3long 6157 + 5929 6148 128547 219 chain 19960 chr12 133851895 + 98275564 98275866 L1P4 1494 - 1078 1390 127271 60 7 11 16 12 16 99 0 4 65 1 0 19 6 5 17 chain 522710 chr12 133851895 + 98286097 98292539 L1PA7 6471 - 4 6471 4893 8 0 1 614 0 19 122 1 0 86 0 3 265 1 0 158 2 1 241 2 0 143 1 4 50 0 1 126 1 3 61 0 1 991 8 0 16 0 4 17 0 3 6 9 6 27 1 0 5 0 1 773 1 5 70 2 3 397 0 1 116 0 1 768 10 1 8 1 0 512 0 1 415 2 4 8 0 3 110 14 14 41 4 5 29 45 39 6 0 6 148 chain 28449 chr12 133851895 + 98314353 98314651 AluYa5 310 - 12 310 91376 298 chain 22223 chr12 133851895 + 98325488 98325830 L1PB2 3958 - 120 460 119248 63 1 0 22 9 7 19 7 11 34 2 1 58 7 6 77 1 0 42 chain 24998 chr12 133851895 + 98335063 98335481 L1PA15 4387 + 3959 4351 104805 144 2 1 27 1 0 54 1 0 12 23 20 50 19 6 41 3 1 14 5 0 22 chain 4198 chr12 133851895 + 98399454 98399515 L1MA9 1812 + 1678 1736 204573 27 1 0 19 2 0 12 chain 18098 chr12 133851895 + 98423824 98424071 AluSc5 308 - 38 278 132600 75 18 14 50 3 0 101 chain 19806 chr12 133851895 + 98428520 98428841 THE1B 368 - 12 363 127795 103 45 55 29 1 0 16 10 31 117 chain 8805 chr12 133851895 + 98438298 98438412 MER2 342 - 83 197 166618 114 chain 25098 chr12 133851895 + 98441211 98441587 THE1B 368 - 0 368 104305 49 2 8 4 0 1 50 14 0 83 2 1 102 15 6 8 0 9 47 chain 8375 chr12 133851895 + 98450034 98450141 MLT1A 405 + 285 392 168998 107 chain 15312 chr12 133851895 + 98453346 98453749 MSTB2 466 + 48 466 140453 12 2 10 22 1 0 49 1 47 9 22 0 4 2 0 11 20 0 37 37 35 15 66 74 93 chain 21341 chr12 133851895 + 98483965 98484330 THE1D 372 - 0 365 122718 133 64 70 37 0 4 71 10 1 45 1 0 4 chain 24784 chr12 133851895 + 98485491 98485821 HSMAR2 1300 - 959 1296 105975 129 2 3 20 5 6 119 0 5 55 chain 28106 chr12 133851895 + 98495796 98496301 L1PB1 5432 + 4915 5381 92627 173 0 4 11 5 2 11 9 0 22 37 29 53 2 1 14 2 1 45 1 0 15 14 1 11 1 0 19 2 0 5 1 0 14 2 0 24 1 0 11 chain 14370 chr12 133851895 + 98505254 98505416 L1PA5 6144 - 12 174 143303 162 chain 4255 chr12 133851895 + 98540018 98540071 LTR67B 553 - 432 485 203824 53 chain 51793 chr12 133851895 + 98592956 98593567 L1PA6 6164 - 8 624 57761 104 1 6 506 chain 526379 chr12 133851895 + 98595465 98601933 L1PA7 6471 + 1 6470 4558 132 21 20 250 2 3 352 0 1 99 1 11 387 8 7 56 0 1 1193 1 0 128 1 2 443 10 14 237 1 0 166 1 0 76 5 7 135 1 0 72 1 2 246 7 14 42 0 1 424 0 2 374 1 0 711 37 23 18 17 7 41 0 2 257 0 1 501 2 0 11 chain 30245 chr12 133851895 + 98643762 98644078 AluYb8 318 - 2 318 84075 316 chain 23025 chr12 133851895 + 98646514 98646794 AluSc8 310 + 19 302 115514 111 2 5 167 chain 76401 chr12 133851895 + 98672134 98672947 L1HS 6032 + 5219 6032 45262 813 chain 8835 chr12 133851895 + 98687082 98687193 FRAM 166 - 20 131 166462 111 chain 515261 chr12 133851895 + 98704546 98710690 L1PA6 6164 + 3 6162 5641 192 0 1 4 1 0 37 0 2 63 0 8 208 0 2 47 1 0 393 0 1 293 1 0 472 1 2 458 0 2 137 0 1 864 0 2 433 0 1 4 1 0 480 38 0 260 0 4 231 0 1 43 1 0 115 0 22 290 5 14 224 0 1 847 chain 4658 chr12 133851895 + 98716956 98717099 L1MA4A 3247 - 75 206 198979 12 0 1 4 1 0 7 42 36 5 1 0 6 1 0 6 5 1 53 chain 16675 chr12 133851895 + 98717967 98718204 L1PA16 3655 - 412 651 136478 42 1 0 30 6 7 35 3 5 120 chain 22119 chr12 133851895 + 98721436 98721703 AluSq2 311 + 26 294 119713 107 0 1 160 chain 25842 chr12 133851895 + 98738752 98739106 THE1A 353 - 0 353 100689 151 1 0 51 9 10 31 2 1 109 chain 56862 chr12 133851895 + 98775345 98776048 L1PA10 4194 + 3460 4161 54626 224 1 0 360 0 3 69 19 16 18 1 0 11 chain 14257 chr12 133851895 + 98829906 98830411 Tigger2 2703 + 2343 2535 143691 28 0 4 98 317 0 62 chain 5355 chr12 133851895 + 98837101 98837315 MLT1E2 623 - 3 233 191489 22 1 0 38 64 79 18 52 54 19 chain 114241 chr12 133851895 + 98851225 98852487 L1PA3long 6157 + 4891 6157 33014 1207 0 4 55 chain 26339 chr12 133851895 + 98870874 98871243 THE1D 372 + 0 372 98658 178 14 16 15 18 19 144 chain 29688 chr12 133851895 + 98890961 98891361 MER57A1 433 + 0 403 85875 64 10 11 214 6 8 106 chain 3424 chr12 133851895 + 98897280 98897319 tRNA-Asp-GAY 44 + 0 39 216709 39 chain 6686 chr12 133851895 + 98898029 98898101 tRNA-Trp-TGG 72 + 0 72 179785 72 chain 35311 chr12 133851895 + 98901629 98902411 MER41A 554 - 12 491 75781 69 0 5 22 1 5 10 0 1 241 7 12 30 318 0 84 chain 33352 chr12 133851895 + 98902770 98903356 MER4A 717 + 19 699 78648 14 1 0 16 0 1 54 4 1 27 3 1 39 0 83 14 11 4 45 15 41 11 0 2 17 0 17 82 59 36 71 5 6 98 chain 23225 chr12 133851895 + 98911658 98911943 AluSq10 312 + 0 303 114567 123 7 0 28 0 1 4 0 24 123 chain 17815 chr12 133851895 + 98970230 98970434 L1PA7 6471 - 686 889 133351 164 1 0 39 chain 59493 chr12 133851895 + 98970434 98971118 L1PA7 6471 + 5782 6466 53114 684 chain 25021 chr12 133851895 + 99002102 99002438 AluY 311 + 0 311 104678 54 27 0 77 0 2 42 5 3 40 0 2 91 chain 24713 chr12 133851895 + 99046393 99046691 AluSp 311 - 1 300 106370 262 0 1 36 chain 66664 chr12 133851895 + 99048603 99049311 SVA_F 1814 - 0 757 49804 676 0 49 32 chain 27713 chr12 133851895 + 99075822 99076130 AluYk4 311 - 3 311 93996 308 chain 36215 chr12 133851895 + 99086293 99086843 L1PA16 3655 - 36 576 74610 16 11 9 6 7 0 11 9 6 207 8 12 19 5 6 36 2 0 90 1 0 122 chain 12568 chr12 133851895 + 99086878 99087036 L1P4 1494 - 871 1026 149973 77 3 0 78 chain 25574 chr12 133851895 + 99095848 99096133 AluYk4 311 - 17 302 101854 285 chain 24082 chr12 133851895 + 99149893 99150250 THE1B 368 + 0 368 109858 169 1 0 29 0 3 5 46 55 107 chain 19787 chr12 133851895 + 99186460 99187102 L1MA6 2487 - 93 626 127853 15 3 0 40 195 112 10 1 6 58 55 56 29 4 1 64 15 25 5 1 0 19 36 2 25 1 0 66 chain 23295 chr12 133851895 + 99245546 99245828 AluSc 308 + 25 307 114229 282 chain 26516 chr12 133851895 + 99314125 99314479 THE1B 368 - 0 368 97986 56 8 6 4 0 1 30 0 1 96 1 0 115 0 15 44 chain 20465 chr12 133851895 + 99331520 99331874 THE1D 372 - 17 372 125717 15 1 0 91 38 39 16 33 34 160 chain 47423 chr12 133851895 + 99355698 99357595 L1MA3 4352 + 96 3391 60883 60 1 0 4 17 1 11 0 3 138 17 12 71 0 1 21 2 1 5 0 1 121 1137 2542 66 5 17 216 1 0 4 chain 131190 chr12 133851895 + 99359365 99360827 L1PA5 6144 + 4672 6144 27820 1133 0 10 329 chain 4595 chr12 133851895 + 99394629 99394685 L1MB1 2102 - 95 151 199685 56 chain 3962 chr12 133851895 + 99407094 99407137 L1PA13 3608 + 2807 2850 207957 43 chain 49503 chr12 133851895 + 99407227 99408008 L1PA13 3608 + 2807 3548 59383 298 0 4 19 1 0 30 3 2 33 8 0 81 2 0 62 1 0 4 1 4 18 1 0 29 15 5 44 14 10 18 1 0 20 24 16 14 1 0 6 7 1 10 4 1 12 chain 46517 chr12 133851895 + 99428802 99429389 MER39B 650 + 0 584 61583 171 0 1 6 1 0 256 3 0 150 chain 4379 chr12 133851895 + 99441766 99441818 MER45A 178 + 99 151 202211 52 chain 29773 chr12 133851895 + 99446223 99446540 AluYb8 318 + 0 316 85571 123 1 0 193 chain 7484 chr12 133851895 + 99477593 99477682 5S 121 - 31 120 174241 89 chain 4767 chr12 133851895 + 99479081 99479132 L1PA3long 6157 + 6106 6157 197740 51 chain 42454 chr12 133851895 + 99511328 99511841 L1P3 4156 - 44 554 66072 5 2 0 501 1 0 4 chain 100317 chr12 133851895 + 99553217 99554967 L1PA16 3655 - 115 1559 36688 111 15 13 126 13 11 155 0 1 7 40 43 397 2 1 27 315 0 32 0 1 142 23 24 180 0 1 50 0 7 115 chain 3622 chr12 133851895 + 99564084 99564124 MIR 256 + 22 62 213298 40 chain 7707 chr12 133851895 + 99575526 99575768 L1MA3 4352 - 87 288 172887 7 2 0 78 1 0 9 116 78 29 chain 24001 chr12 133851895 + 99575769 99576119 THE1D 372 - 0 372 110327 148 30 47 16 0 1 24 2 6 130 chain 525493 chr12 133851895 + 99579225 99585622 L1PA7 6471 + 0 6461 4627 116 0 1 62 1 2 137 4 5 84 1 2 17 0 1 238 2 3 11 0 1 84 0 1 56 1 2 441 34 50 214 0 39 405 4 1 168 2 0 191 0 1 308 1 0 908 0 4 283 1 0 321 3 1 53 8 10 45 0 1 7 0 2 241 0 1 438 2 0 321 1 0 347 11 6 70 0 2 11 0 1 153 0 1 263 0 1 165 1 2 162 chain 27949 chr12 133851895 + 99608494 99608854 THE1B-int 1605 + 44 430 93172 67 0 1 62 0 24 144 5 6 82 chain 2620 chr12 133851895 + 99610913 99610941 MLT1J 494 + 428 456 231426 28 chain 10218 chr12 133851895 + 99612933 99613073 MER67D 511 + 27 267 159524 127 0 100 13 chain 39343 chr12 133851895 + 99619196 99619728 MLT2A2 560 + 0 560 70263 126 1 2 164 0 1 106 3 14 89 5 16 32 0 4 6 chain 7010 chr12 133851895 + 99629984 99630063 L1PREC2 3366 - 1038 1117 177400 79 chain 501340 chr12 133851895 + 99631707 99637804 L1PA6 6164 + 1 6162 6763 448 8 0 118 4 3 217 0 17 185 2 0 37 7 8 148 0 1 368 0 1 531 3 4 29 0 3 214 7 8 40 0 1 300 0 16 492 0 1 979 9 15 463 0 1 35 6 6 505 0 17 619 0 1 108 0 7 215 chain 17601 chr12 133851895 + 99657356 99657701 THE1D 372 + 0 372 133994 57 1 27 100 7 1 14 21 23 16 12 17 20 14 15 42 18 17 23 chain 6864 chr12 133851895 + 99667662 99667769 MER30 238 + 125 232 178466 6 4 0 7 2 0 14 0 6 74 chain 35634 chr12 133851895 + 99685511 99685917 L1PA6 6164 + 4729 5136 75363 175 0 1 231 chain 6146 chr12 133851895 + 99685917 99685988 L1PA6 6164 + 5137 5208 184027 71 chain 83156 chr12 133851895 + 99686316 99687283 L1PA6 6164 + 5193 6160 42272 122 2 1 699 0 1 144 chain 40549 chr12 133851895 + 99697421 99698096 L1PB1 5432 - 2 657 68510 4 1 0 8 1 0 14 1 0 12 1 0 22 1 0 20 29 24 18 12 5 8 3 0 7 10 9 42 1 0 16 2 1 49 20 14 13 1 0 10 1 0 20 4 17 299 3 1 22 chain 21085 chr12 133851895 + 99698684 99699082 MSTB 430 - 13 430 123593 58 0 1 38 18 23 43 18 12 35 3 0 5 57 79 123 chain 66066 chr12 133851895 + 99706550 99709308 L1PA8A 6298 + 3176 5647 17188 438 1 5 40 3 5 18 0 4 17 4 0 170 6 7 560 0 1 898 0 5 30 337 35 4 1 0 36 10 11 28 0 3 23 8 7 126 chain 517284 chr12 133851895 + 99709455 99715586 L1PA5 6144 - 5 6132 5452 863 0 2 486 5 7 291 1 5 167 0 1 183 1 0 811 4 0 44 1 0 516 2 0 224 0 3 228 6 0 232 16 1 893 20 11 259 6 2 742 0 12 22 0 14 108 chain 15331 chr12 133851895 + 99715602 99716242 L1PA8A 6298 + 5647 6290 17188 309 0 1 49 0 2 140 0 31 7 36 5 99 chain 3672 chr12 133851895 + 99782665 99782739 MLT1E1A 663 - 448 523 212355 19 17 18 38 chain 38822 chr12 133851895 + 99808141 99808595 L1PA7 6471 + 5991 6445 70987 145 0 1 171 2 1 136 chain 31666 chr12 133851895 + 99818507 99818935 MER57A1 433 + 1 433 81381 96 0 1 133 0 5 24 8 3 24 1 2 39 0 2 103 chain 15728 chr12 133851895 + 99854858 99855175 L1PB1 5432 + 5114 5404 139182 24 1 0 4 3 2 12 2 0 3 2 0 8 13 11 42 0 2 15 1 0 44 1 0 15 2 0 6 16 6 18 3 1 5 1 0 12 2 0 26 1 0 22 1 0 12 chain 555957 chr12 133851895 + 99857085 99863228 L1PA3long 6157 + 6 6157 729 564 1 2 2107 0 5 1387 0 1 489 0 1 1595 chain 104676 chr12 133851895 + 99885535 99886890 L1PREC2 3366 + 917 2295 35571 256 5 10 127 0 3 199 0 1 4 1 0 172 2 5 326 0 11 133 1 2 129 chain 83037 chr12 133851895 + 99905062 99906324 L1PA11 4918 + 3390 4626 42319 221 0 2 53 1 0 28 1 2 78 0 1 35 1 0 122 1 0 5 0 1 93 15 8 6 0 7 261 20 23 129 9 10 11 3 2 20 4 0 9 3 1 15 14 6 15 1 0 13 2 0 11 47 33 15 chain 70442 chr12 133851895 + 99926479 99927479 L1PB3 3668 - 990 1975 48187 14 1 0 5 1 0 157 9 10 34 3 0 77 6 8 11 9 5 232 0 3 10 15 1 88 5 3 141 0 4 182 chain 94219 chr12 133851895 + 99931416 99932884 L1MA1 4479 - 341 1789 38291 29 5 3 28 1 0 126 3 0 5 1 0 72 56 53 67 1 0 16 2 0 24 2 1 196 3 0 123 16 13 18 10 11 85 4 3 14 1 0 94 27 31 141 2 0 27 1 0 97 1 0 57 2 1 32 2 0 16 7 11 54 chain 18067 chr12 133851895 + 99954923 99955149 Tigger1 2417 - 329 555 132681 226 chain 29608 chr12 133851895 + 99975386 99975705 AluYb8 318 + 0 318 86182 132 1 0 186 chain 3982 chr12 133851895 + 100006131 100006284 MIR 256 - 36 190 207648 23 90 91 40 chain 187961 chr12 133851895 + 100009285 100011582 L1PA8 5853 + 3558 5853 20239 406 0 3 989 0 1 21 0 1 27 2 0 3 2 0 378 5 9 125 0 2 41 1 0 45 4 0 69 28 26 36 2 1 19 1 0 93 chain 3508 chr12 133851895 + 100024574 100024615 MSTC 436 + 293 334 215229 41 chain 20709 chr12 133851895 + 100024615 100024960 THE1B 368 + 0 348 124933 6 0 1 162 1 0 11 70 73 95 chain 41157 chr12 133851895 + 100026546 100027012 L1PA5 6144 - 7 474 67702 246 0 1 220 chain 52228 chr12 133851895 + 100054650 100055317 PABL_B 668 + 2 668 57484 279 1 0 4 1 2 17 7 8 38 2 1 201 2 1 115 chain 5579 chr12 133851895 + 100058754 100059005 L1ME1 1623 - 156 409 189285 21 7 0 13 151 160 59 chain 73076 chr12 133851895 + 100075650 100076620 L1PB1 5432 + 1568 2546 46993 217 5 14 189 2 0 65 2 0 92 0 8 137 0 1 188 16 10 57 chain 17077 chr12 133851895 + 100096538 100096794 L1MA3 4352 - 1101 1358 135384 58 0 1 5 1 0 106 25 23 8 0 3 53 chain 28012 chr12 133851895 + 100108959 100109367 LTR7 482 + 0 482 92958 11 0 1 57 8 46 109 8 40 22 1 0 100 0 2 31 12 14 49 chain 296452 chr12 133851895 + 100109369 100113312 HERVH-int 3825 + 0 3825 13621 29 8 0 286 18 17 49 5 9 144 1 0 11 5 93 18 22 0 17 84 0 24 1 0 82 1 0 1406 0 1 19 0 1 68 310 0 69 0 1 679 2 0 47 9 11 37 0 200 7 0 10 392 6 11 87 chain 29256 chr12 133851895 + 100115105 100115515 LTR7 482 + 1 482 87755 68 8 46 109 0 1 26 1 31 137 12 14 49 chain 460431 chr12 133851895 + 100116598 100122718 L1PA8A 6298 + 35 6135 8385 5 1 0 16 1 0 12 3 0 5 15 7 11 0 2 7 4 0 19 19 10 20 1 0 8 8 7 6 1 0 7 2 1 13 1 0 11 2 0 6 1 0 13 12 10 4 1 0 9 1 0 8 10 5 9 2 0 43 2 0 21 8 0 74 2 0 18 1 0 9 6 4 52 17 24 110 0 3 41 0 1 140 4 0 188 3 2 104 0 4 24 13 15 14 11 13 52 14 10 131 12 13 527 2 1 126 0 2 5 3 2 534 0 4 157 1 0 151 0 3 81 0 4 137 0 3 75 0 7 255 0 5 288 2 0 3 3 0 45 1 2 637 0 1 643 12 12 94 0 7 152 0 5 145 5 8 346 11 18 195 26 9 70 chain 54969 chr12 133851895 + 100135023 100135673 L1PA7 6471 + 5799 6464 55723 46 0 1 20 0 10 433 1 3 121 0 2 29 chain 13384 chr12 133851895 + 100147272 100147425 L1PA13 3608 - 2821 2974 146770 153 chain 178031 chr12 133851895 + 100147826 100150581 L1PA13 3608 + 910 3548 21160 136 4 1 6 1 0 99 0 4 239 0 10 99 1 0 393 3 0 6 4 5 32 5 2 19 5 8 74 0 1 136 19 24 272 47 37 185 102 14 244 0 1 109 13 21 41 1 0 32 1 0 22 0 3 47 5 9 32 2 0 29 0 2 28 10 9 6 0 1 14 1 0 29 8 5 47 2 0 5 2 0 16 3 2 22 24 16 14 14 7 10 23 1 12 chain 4278 chr12 133851895 + 100149611 100149662 L1PA13 3608 + 1085 1145 199473 25 0 9 26 chain 3475 chr12 133851895 + 100177321 100177376 L1MA5 2750 + 2600 2653 215725 30 3 2 14 1 0 7 chain 37877 chr12 133851895 + 100209647 100210292 L1PB2 3958 - 120 762 72311 24 0 8 28 5 4 83 24 23 40 13 12 45 24 18 97 9 5 13 6 4 60 6 0 11 1 0 29 16 27 111 chain 150195 chr12 133851895 + 100237548 100239685 L1PA11 4918 - 289 2429 24588 18 19 13 4 1 0 11 12 5 11 1 0 13 1 0 15 13 9 10 17 12 19 4 3 11 2 0 17 0 1 48 4 5 9 1 0 64 1 0 21 1 0 39 3 4 82 4 9 268 0 4 328 0 3 254 0 2 43 0 1 76 0 1 48 0 4 230 28 33 247 1 0 86 0 4 11 0 1 30 0 2 11 chain 335296 chr12 133851895 + 100248089 100252644 L1PB1 5432 + 714 5292 12016 39 23 23 35 0 4 282 1 2 308 0 2 253 7 0 768 0 1 65 8 0 81 0 5 170 23 26 62 1 2 10 0 22 12 0 3 475 2 3 6 1 0 191 0 1 169 3 0 221 3 0 5 0 5 406 1 2 67 6 7 181 3 0 123 0 13 41 2 1 297 17 13 24 6 4 14 17 11 50 1 0 12 6 5 44 1 0 12 chain 3608 chr12 133851895 + 100276354 100276397 L1PB1 5432 + 5236 5279 213506 43 chain 8184 chr12 133851895 + 100276427 100276573 L1PB1 5432 + 5295 5430 170046 27 3 1 9 1 0 14 2 0 24 1 0 9 1 0 14 1 0 11 1 0 14 1 0 7 1 0 5 chain 4159 chr12 133851895 + 100277837 100277916 MADE1 96 - 1 96 205110 31 18 34 30 chain 13229 chr12 133851895 + 100279871 100280037 L1PB3 3668 - 401 568 147359 74 0 1 92 chain 3942 chr12 133851895 + 100289044 100289142 MLT2B1 522 - 0 122 208243 36 43 67 19 chain 23144 chr12 133851895 + 100314873 100315254 THE1D 372 + 0 372 114922 62 6 7 7 19 0 90 26 30 42 3 9 89 2 1 35 chain 29817 chr12 133851895 + 100322039 100322355 AluYb8 318 - 2 318 85387 316 chain 121894 chr12 133851895 + 100323037 100324375 L1PA4 6152 - 762 2100 30414 1338 chain 67023 chr12 133851895 + 100324375 100325129 L1PA4 6152 + 5395 6151 49353 422 0 1 111 0 1 221 chain 18256 chr12 133851895 + 100337589 100337806 L1PA7 6471 - 4 224 132184 8 2 0 41 0 4 98 0 1 68 chain 21934 chr12 133851895 + 100349066 100349300 AluYg6 310 + 76 310 120482 234 chain 76337 chr12 133851895 + 100355887 100357151 L1PA8A 6298 - 15 978 45298 95 1 0 4 0 1 86 2 4 63 0 1 25 5 0 141 0 3 147 0 1 132 325 15 67 0 7 171 chain 7976 chr12 133851895 + 100368632 100368731 Tigger1 2417 - 828 927 171197 99 chain 3149 chr12 133851895 + 100383478 100383514 MER58B 340 - 89 125 221950 36 chain 270949 chr12 133851895 + 100386325 100389532 L1PA6 6164 + 2964 6162 15142 225 0 1 507 1 0 255 0 1 105 0 1 41 5 0 114 0 2 463 1 0 436 1 0 124 1 0 165 2 0 599 1 0 5 6 0 9 0 8 131 4 0 6 chain 29794 chr12 133851895 + 100392632 100392942 AluYa5 310 - 0 310 85484 310 chain 522266 chr12 133851895 + 100404537 100410579 L1PA5 6144 + 1 6132 4931 119 0 14 204 2 0 99 11 53 371 0 1 307 9 0 875 8 13 462 0 2 680 0 1 43 4 10 98 0 1 560 2 3 261 0 1 160 0 1 952 1 2 63 1 0 22 1 0 163 1 2 71 0 1 98 0 19 220 0 5 174 chain 25892 chr12 133851895 + 100415858 100416178 L1PB1 5432 + 3976 4296 100472 320 chain 12794 chr12 133851895 + 100416180 100416332 L1PB1 5432 + 4296 4448 149079 152 chain 23336 chr12 133851895 + 100416343 100416645 L1PB1 5432 + 4695 5012 114000 103 0 8 39 0 1 59 0 3 24 4 7 73 chain 59409 chr12 133851895 + 100438469 100439155 L1PA6 6164 + 4095 4781 53170 686 chain 112857 chr12 133851895 + 100439168 100440505 L1PA6 6164 + 4816 6156 33412 554 0 3 783 chain 6968 chr12 133851895 + 100450068 100450154 MSTD 398 + 289 376 177692 34 1 2 51 chain 320116 chr12 133851895 + 100457024 100463624 L1PB1 5432 + 77 5420 12592 21 4 8 120 361 40 316 5 9 171 1 0 575 0 5 24 9 10 15 22 0 19 0 1 129 1067 1 139 0 5 258 314 0 104 3 1 100 6 7 343 4 0 89 0 5 250 1 0 11 17 884 53 25 0 54 1 0 118 0 1 5 0 1 5 1 0 130 0 1 371 0 5 10 0 1 53 0 1 4 1 0 11 2 0 48 0 4 15 3 0 17 18 12 115 10 9 24 5 13 102 282 0 94 0 2 16 20 21 47 89 0 14 1 0 24 1 0 9 1 0 9 2 0 3 2 0 10 3 1 50 20 18 43 1 0 15 14 1 30 3 1 4 1 0 14 3 1 23 1 0 21 1 0 9 0 1 5 2 0 14 chain 82228 chr12 133851895 + 100458816 100459880 MER11A 1151 + 0 1151 42667 59 0 99 134 11 7 27 0 2 39 4 1 192 1 0 237 10 9 56 3 0 170 1 0 53 3 2 64 chain 2387 chr12 133851895 + 100468047 100468089 L1P4 1494 + 560 603 234333 21 6 7 15 chain 114619 chr12 133851895 + 100472924 100474604 THE1B-int 1605 + 0 1599 32918 25 3 0 5 1 4 9 2 4 100 0 1 134 8 12 42 0 2 56 0 1 13 32 57 140 1 0 9 1 0 211 0 1 307 3 0 3 1 0 87 0 1 10 113 3 53 1 0 106 1 0 203 chain 28279 chr12 133851895 + 100474609 100474999 THE1B 368 + 0 368 92004 77 32 11 84 2 1 195 chain 19210 chr12 133851895 + 100502437 100502700 L1MA3 4352 + 3831 4093 129501 11 4 5 108 2 1 107 1 0 30 chain 41183 chr12 133851895 + 100540694 100542180 MER4E1 777 + 161 752 67665 4 0 1 280 7 23 74 20 26 9 921 0 38 1 2 100 0 2 32 chain 6562 chr12 133851895 + 100544212 100544307 LTR23 429 + 164 251 180765 72 8 0 15 chain 12079 chr12 133851895 + 100545393 100545582 LTR24C 604 + 29 208 151873 58 25 15 106 chain 221220 chr12 133851895 + 100553632 100557589 HERVK22-int 3844 - 0 3489 17799 21 12 10 63 1 0 88 826 193 4 1 0 28 11 7 20 142 104 14 2 0 41 19 14 39 2 0 20 1 0 34 1 0 20 7 5 59 0 4 8 1 0 404 5 4 59 1 7 160 0 1 126 0 1 260 0 12 93 0 10 216 9 13 50 0 6 275 4 203 147 7 1 69 28 11 202 0 4 324 13 15 20 chain 12802 chr12 133851895 + 100563740 100563894 L1PA8 5853 - 0 152 149043 93 1 0 16 1 0 43 chain 38806 chr12 133851895 + 100582547 100583062 LTR12 884 - 1 884 71012 22 0 236 249 2 0 30 5 6 115 0 134 66 1 0 25 chain 4769 chr12 133851895 + 100599210 100599269 L1PA8 5853 + 5794 5853 197704 59 chain 2457 chr12 133851895 + 100617447 100617491 MADE1 96 + 55 96 233614 15 7 4 22 chain 103013 chr12 133851895 + 100629654 100631358 L1PB1 5432 - 151 1533 35986 45 7 6 9 2 1 53 2 0 8 6 2 10 1 0 13 1 0 20 22 20 311 3 4 157 0 1 60 0 7 67 2 1 4 0 1 197 1 0 319 322 3 57 0 1 5 chain 8426 chr12 133851895 + 100651467 100651568 HY3 101 - 1 101 168703 51 1 0 49 chain 176235 chr12 133851895 + 100687308 100689527 SVA_D 2077 - 1 2076 21335 666 18 17 4 0 1 251 188 0 82 1 2 5 1 0 10 0 2 75 22 65 687 1 0 178 1 6 18 5 0 6 chain 4955 chr12 133851895 + 100688382 100688435 SVA_D 2077 - 535 588 149772 53 chain 9407 chr12 133851895 + 100695354 100695468 L1MA2 4263 - 3292 3406 163521 114 chain 182168 chr12 133851895 + 100696135 100698377 L1PA7 6471 - 4105 6351 20768 321 0 5 475 0 6 311 8 0 478 0 1 52 0 2 303 2 0 11 0 3 28 1 2 127 5 1 120 chain 338778 chr12 133851895 + 100698379 100702417 L1PA7 6471 + 2402 6461 11929 5 0 3 231 1 0 756 0 6 98 2 0 28 15 2 18 0 4 40 0 4 284 0 3 516 0 7 223 1 4 350 6 7 548 1 0 4 0 1 76 0 4 50 0 2 371 0 1 365 6 5 43 chain 22765 chr12 133851895 + 100721296 100721567 AluSg7 307 - 13 283 116757 162 1 0 108 chain 58406 chr12 133851895 + 100736519 100737204 L1PA5 6144 + 5448 6144 53745 471 0 4 58 9 16 147 chain 15967 chr12 133851895 + 100749959 100750174 L1PA8 5853 + 5642 5853 138463 39 9 7 52 2 1 19 1 0 93 chain 5823 chr12 133851895 + 100754380 100754444 MIR 256 - 121 185 186912 64 chain 8871 chr12 133851895 + 100765898 100766007 MLT1B 390 - 0 109 166276 109 chain 28262 chr12 133851895 + 100792483 100792848 THE1B 368 + 0 368 92071 40 0 5 127 2 1 120 1 0 75 chain 16745 chr12 133851895 + 100806090 100806348 L1PA8 5853 + 5588 5847 136272 20 10 8 62 12 17 49 4 3 13 1 0 87 chain 14115 chr12 133851895 + 100822373 100822577 MER30 238 - 1 238 144163 38 0 3 68 16 37 9 0 9 73 chain 123845 chr12 133851895 + 100823896 100825322 LTR12C 1709 + 0 1709 29753 653 0 278 152 0 4 25 1 0 4 4 2 106 0 4 481 chain 5860 chr12 133851895 + 100828921 100829040 L1PB1 5432 - 10 120 186588 4 1 0 13 1 0 13 5 4 18 1 0 24 2 0 14 1 0 5 3 1 14 chain 55321 chr12 133851895 + 100916600 100917395 L1PB3 3668 - 102 870 55508 28 12 10 25 2 0 16 25 9 87 1 0 18 0 1 81 1 0 61 0 1 226 2 0 5 2 0 11 1 0 153 2 0 36 chain 28307 chr12 133851895 + 100927668 100927970 AluYb8 318 - 13 318 91914 243 0 3 59 chain 128399 chr12 133851895 + 100952976 100954478 LTR12C 1709 + 0 1709 28476 753 0 2 57 0 200 99 1 0 5 3 1 107 0 4 413 0 4 64 chain 6985 chr12 133851895 + 100962429 100962824 MLT1C 463 - 0 406 177578 41 41 39 32 240 253 41 chain 9966 chr12 133851895 + 100976821 100976945 MER41B 635 - 28 154 160747 98 0 1 7 0 1 19 chain 261791 chr12 133851895 + 100979902 100984840 L1PB1 5432 + 1863 5413 15602 140 4 0 374 10 9 14 1 0 47 0 4 48 0 1 340 2 0 219 10 4 273 1 0 154 316 0 111 1033 2 129 1 11 20 0 1 262 1 0 98 2 3 88 1 0 53 0 13 165 0 1 37 18 13 129 3 0 366 1 4 79 14 18 13 24 2 6 1 0 20 1 0 13 16 11 9 2 0 53 2 1 17 1 0 42 1 0 16 1 0 4 2 0 11 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 71610 chr12 133851895 + 100981967 100982994 MER11A 1151 - 0 1151 47652 163 6 7 60 0 1 30 22 4 24 8 41 21 0 3 50 0 4 53 5 6 145 0 1 94 0 1 106 5 7 36 4 0 66 1 0 50 8 0 24 1 100 11 0 9 34 chain 69220 chr12 133851895 + 101000820 101002156 L1M1 2793 - 947 2222 48711 65 1 2 32 0 1 99 0 2 141 0 4 41 1 2 90 1 0 4 0 1 12 9 7 67 4 1 6 1 0 11 8 10 11 14 13 44 1 0 111 0 7 59 1 0 51 0 10 40 2 1 58 17 15 16 286 213 10 3 0 10 1 0 8 chain 33877 chr12 133851895 + 101026882 101027281 LTR2 463 - 0 463 77814 152 1 0 97 0 65 149 chain 94891 chr12 133851895 + 101027289 101029895 HERVE_a-int 7009 - 3 2526 6421 7 1 0 8 3 1 24 32 24 15 4 2 34 2 0 24 1 0 13 3 1 6 1 0 31 1 0 26 3 1 54 9 2 24 4 0 9 2 1 61 1 0 27 1 0 4 1 0 42 5 4 26 1 0 22 20 17 5 1 0 15 1 0 11 7 6 26 1 0 42 1 0 138 2 0 80 1 0 12 1 0 19 4 2 56 1 0 5 1 0 13 1 0 102 2 0 259 1 0 12 1 0 85 1 0 29 1 0 36 13 11 71 1 0 9 12 11 17 1 0 111 9 0 19 1 4 46 9 0 686 1 0 75 chain 60007 chr12 133851895 + 101029912 101030582 L1PA4 6152 - 9 678 52818 181 1 0 488 chain 547593 chr12 133851895 + 101030601 101036745 L1PA4 6152 - 1 6152 1754 594 1 2 2261 0 1 1441 0 5 1847 chain 162363 chr12 133851895 + 101036745 101041204 HERVE_a-int 7009 - 2526 6874 6421 640 0 1 22 0 2 160 0 1 98 1 0 495 3 0 88 1 0 405 1 0 56 0 18 90 13 12 29 1 0 15 1 0 144 1 0 8 7 5 17 13 8 29 6 4 25 2 1 53 0 2 39 1 0 12 1 0 24 1 0 16 1 0 25 1 0 43 1 0 16 0 8 11 1 0 7 1 0 36 1 0 62 1 0 38 1 0 40 2 1 20 1 0 4 22 20 8 1 0 12 1 0 20 1 0 19 1 0 37 1 0 4 0 1 73 1 0 15 2 1 22 1 0 58 2 0 57 1 0 5 1 0 4 2 1 10 1 0 7 7 5 23 1 0 15 1 0 6 2 1 17 1 0 4 3 0 10 24 21 21 1 0 52 1 0 14 2 0 40 1 0 32 2 1 73 12 10 25 1 0 66 1 0 27 6 4 51 1 0 6 6 5 32 6 5 11 1 0 12 1 0 99 1 0 34 1 0 43 0 3 8 3 2 17 1 0 45 1 0 25 4 2 34 28 0 18 1 0 5 1 0 6 35 26 13 1 0 9 1 0 7 1 0 4 1 0 24 9 5 75 13 1 29 3 0 21 chain 36710 chr12 133851895 + 101041966 101042405 LTR2 463 - 0 462 73944 274 7 27 104 0 3 54 chain 20861 chr12 133851895 + 101056578 101056866 AluY 311 + 0 305 124423 46 14 22 63 10 19 155 chain 29294 chr12 133851895 + 101078320 101078674 THE1C 375 - 20 375 87605 168 0 1 186 chain 105772 chr12 133851895 + 101078684 101080225 THE1C-int 1605 - 11 1590 35311 106 27 23 41 1 0 81 3 15 206 0 7 257 53 67 36 7 1 55 18 17 169 0 2 59 12 19 35 0 4 68 26 31 171 1 0 109 chain 25089 chr12 133851895 + 101080280 101080611 THE1C 375 - 39 373 104357 152 1 2 5 0 1 65 3 4 105 chain 20867 chr12 133851895 + 101086748 101087001 L1MA2 4263 - 870 1122 124401 129 1 0 123 chain 80953 chr12 133851895 + 101198322 101199500 L1PA11 4918 - 352 1499 43213 12 1 0 13 50 37 16 5 4 9 2 0 67 1 2 11 1 0 59 13 6 206 1 2 68 0 2 143 2 0 5 0 2 9 5 4 215 2 1 127 17 9 118 chain 17206 chr12 133851895 + 101230127 101230320 L1PA5 6144 - 6 199 135020 193 chain 4955 chr12 133851895 + 101254554 101256090 Tigger3b 1229 - 0 973 195651 46 1410 850 5 2 0 29 5 4 39 chain 48738 chr12 133851895 + 101258470 101259052 L1PA7 6471 - 6 642 59923 112 2 0 37 2 0 5 1 3 123 0 3 13 0 53 287 chain 31947 chr12 133851895 + 101259053 101259434 L1PA7 6471 + 5424 5810 80948 186 4 7 57 0 2 134 chain 4714 chr12 133851895 + 101259476 101259558 LTR33 499 - 10 90 198345 34 14 12 34 chain 16717 chr12 133851895 + 101268628 101268906 MSTA-int 1630 + 1343 1622 136350 44 0 1 5 8 9 112 45 44 64 chain 8934 chr12 133851895 + 101268943 101269077 MSTA 426 + 33 191 165954 74 17 41 43 chain 12503 chr12 133851895 + 101270717 101271014 L1MA7 2200 + 1821 2089 150229 8 1 0 112 2 1 8 2 1 26 99 73 39 chain 8938 chr12 133851895 + 101274769 101274868 L1PA4 6152 - 214 313 165931 99 chain 18591 chr12 133851895 + 101274868 101275072 L1PA4 6152 + 5947 6151 131253 204 chain 53455 chr12 133851895 + 101282675 101283264 L1PA3long 6157 - 15 604 56719 589 chain 26527 chr12 133851895 + 101283264 101283587 L1PA3long 6157 + 5240 5568 97946 70 19 23 218 0 1 16 chain 6670 chr12 133851895 + 101286444 101286523 MER2 342 - 127 206 179901 79 chain 25565 chr12 133851895 + 101288497 101288770 AluYa5 310 + 35 308 101907 273 chain 22256 chr12 133851895 + 101294089 101294340 L1PA5 6144 - 6 259 119095 117 0 2 134 chain 13612 chr12 133851895 + 101294347 101294500 L1PA5 6144 + 5743 5896 145929 153 chain 93575 chr12 133851895 + 101316919 101317998 L1PA6 6164 - 2 1080 38488 854 1 0 224 chain 12811 chr12 133851895 + 101319118 101319265 L1PA7 6471 - 162 309 149011 147 chain 15252 chr12 133851895 + 101319265 101319433 L1PA7 6471 + 6302 6470 140624 168 chain 106550 chr12 133851895 + 101322756 101324345 L1MA3 4352 - 0 1499 35106 22 6 2 14 1 0 26 1 0 9 1 0 19 2 0 17 11 7 31 0 2 9 0 4 78 3 0 6 35 14 64 1 0 23 0 4 94 1 3 41 1 0 96 5 9 224 72 6 102 1 0 23 6 7 10 1 0 533 chain 198890 chr12 133851895 + 101326900 101329209 L1PA6 6164 - 3 2339 19290 7 3 0 519 0 4 136 0 15 164 0 4 541 1 9 48 2 1 888 chain 4874 chr12 133851895 + 101330076 101330138 MER20 218 - 53 113 196547 5 2 0 55 chain 5687 chr12 133851895 + 101354314 101354379 L1PA8 5853 + 5788 5853 188227 65 chain 30360 chr12 133851895 + 101391778 101392236 MLT2A1 477 + 0 477 83757 76 7 13 75 9 13 18 2 1 189 43 53 39 chain 273987 chr12 133851895 + 101423700 101427253 L1PA3long 6157 + 2435 6155 14975 257 19 22 308 1 0 154 0 1 10 0 11 21 16 23 37 0 9 55 1 17 139 25 25 128 0 1 41 1 0 311 3 7 661 0 2 6 3 1 27 0 1 286 0 115 572 0 1 471 chain 86227 chr12 133851895 + 101427255 101428376 L1PA8A 6298 + 5166 6291 41070 323 0 2 84 1 2 589 3 4 12 7 6 85 1 2 16 chain 31257 chr12 133851895 + 101434382 101434753 L1PA7 6471 - 3 372 82069 7 4 0 153 0 1 176 0 1 31 chain 530297 chr12 133851895 + 101450636 101457106 L1PA7 6471 - 3 6465 4151 615 9 0 219 0 1 435 0 1 842 0 1 387 0 1 203 19 0 222 0 1 10 15 15 36 1 3 28 5 3 582 0 1 183 1 2 29 7 8 34 0 1 39 0 1 32 3 0 470 4 3 31 4 2 45 0 1 8 0 1 369 1 4 1192 12 13 117 6 6 210 22 32 23 chain 12730 chr12 133851895 + 101458249 101458440 L1PA7 6471 + 6265 6456 149330 84 26 26 81 chain 92943 chr12 133851895 + 101459160 101460384 L1MA2 4263 + 1540 2764 38673 430 1 0 219 6 5 134 1 2 183 1 0 41 1 5 85 6 4 116 chain 92760 chr12 133851895 + 101466252 101467344 L1PA6 6164 + 5038 6149 38726 270 2 0 9 0 8 34 0 1 345 0 2 53 0 10 379 chain 19923 chr12 133851895 + 101475830 101476129 THE1B 368 + 1 306 127391 168 1 0 21 3 5 5 1 0 9 1 5 16 1 0 12 2 1 44 0 4 15 chain 93444 chr12 133851895 + 101483457 101484518 L1PA5 6144 + 5065 6126 38520 918 0 1 6 1 0 136 chain 6216 chr12 133851895 + 101494743 101494819 MER58A 224 + 42 118 183445 76 chain 36324 chr12 133851895 + 101512506 101512902 L1PA5 6144 - 9 405 74468 396 chain 9510 chr12 133851895 + 101533387 101533501 MER87B 500 + 0 114 163019 114 chain 23733 chr12 133851895 + 101539539 101539804 HERVH-int 3825 + 1854 2119 111871 265 chain 555057 chr12 133851895 + 101539821 101545842 L1HS 6032 + 0 6032 818 710 0 7 2424 0 4 2887 chain 281183 chr12 133851895 + 101545842 101548919 L1PA2 6032 + 2952 6032 14562 103 1 2 2121 0 1 671 0 1 181 chain 21866 chr12 133851895 + 101553687 101553958 AluSx4 309 + 10 279 120768 54 2 0 215 chain 29209 chr12 133851895 + 101556140 101556524 L1PA16 3655 + 3211 3590 88005 79 2 0 126 6 5 48 0 1 108 3 0 12 chain 3445 chr12 133851895 + 101580591 101580648 MIRb 242 + 72 130 216278 34 5 6 18 chain 117645 chr12 133851895 + 101607715 101609248 THE1B-int 1605 + 24 1598 31910 79 5 8 321 0 25 224 3 5 19 1 2 202 14 15 218 0 4 201 1 2 84 1 0 86 0 5 74 chain 46121 chr12 133851895 + 101625135 101625721 LTR71B 605 - 0 605 61924 19 0 1 145 1 0 158 0 3 130 7 23 126 chain 18143 chr12 133851895 + 101629215 101629411 L1PA3long 6157 + 5961 6157 132491 196 chain 4729 chr12 133851895 + 101630317 101630385 MER53 195 + 108 175 198172 9 2 1 57 chain 367710 chr12 133851895 + 101654871 101658978 L1PA4 6152 - 9 4100 11159 414 16 0 443 0 1 275 1 0 946 0 1 1376 2 1 634 chain 32152 chr12 133851895 + 101665508 101666057 L1MA4 2864 + 1586 2146 80608 119 10 5 35 0 1 83 7 6 32 1 0 49 6 10 19 2 4 32 7 16 14 8 12 4 1 0 55 12 14 5 2 0 17 1 0 28 chain 26584 chr12 133851895 + 101700669 101700972 AluY 311 + 0 299 97709 130 4 0 169 chain 21529 chr12 133851895 + 101717644 101717929 AluSg 306 + 10 295 122048 32 0 6 7 8 2 238 chain 22940 chr12 133851895 + 101739835 101740119 AluSp 311 - 18 303 115906 172 0 1 16 1 0 64 1 2 30 chain 22740 chr12 133851895 + 101746015 101746262 L1PA3long 6157 - 336 583 116871 247 chain 30080 chr12 133851895 + 101746262 101746599 L1PA3long 6157 + 5819 6156 84564 197 0 1 135 1 0 4 chain 357122 chr12 133851895 + 101782032 101785972 L1PA3long 6157 + 2194 6149 11429 175 0 10 530 0 5 204 0 3 574 1 0 1612 1 0 584 1 0 258 chain 26552 chr12 133851895 + 101806090 101806386 L1PA5 6144 - 1781 2081 96591 92 0 5 19 1 0 184 chain 155192 chr12 133851895 + 101806386 101808128 L1PA5 6144 + 4382 6132 23959 346 0 1 702 0 7 694 chain 25051 chr12 133851895 + 101821515 101821797 AluY 311 + 15 297 104538 282 chain 5040 chr12 133851895 + 101832352 101832411 L1PB1 5432 + 5238 5296 194727 43 1 0 15 chain 24233 chr12 133851895 + 101842022 101844835 L1PB3 3668 - 87 1551 109032 12 7 3 37 3 1 23 3 2 21 19 4 36 13 3 47 2 1 86 0 11 18 2274 977 62 27 24 63 27 0 33 chain 17083 chr12 133851895 + 101859961 101860178 AluJb 308 + 81 302 135371 178 1 5 38 chain 16384 chr12 133851895 + 101877032 101877337 Tigger3b 1229 - 681 938 137247 40 11 12 71 0 2 28 4 7 53 3 0 8 51 0 36 chain 4021 chr12 133851895 + 101895464 101895520 MLT1N2 510 - 446 504 207072 22 1 2 24 0 1 9 chain 266491 chr12 133851895 + 101902704 101905586 L1PA2 6032 - 0 2883 15368 20 0 1 2862 chain 29173 chr12 133851895 + 101907367 101907752 L1P4 1494 - 1020 1402 88184 163 1 0 167 1 0 19 2 1 32 chain 25691 chr12 133851895 + 101908408 101908791 L1PA17 2846 + 2325 2693 101327 174 4 0 15 12 7 12 1 0 59 2 0 8 1 0 32 1 0 18 7 6 37 chain 8211 chr12 133851895 + 101913182 101913415 MLT1A 405 - 38 287 169882 73 19 19 19 72 90 30 7 5 13 chain 10762 chr12 133851895 + 101914151 101914340 L1MA4A 3247 + 3006 3185 157150 101 1 0 19 29 23 30 3 0 6 chain 4315 chr12 133851895 + 101922330 101922381 MIR 256 + 126 177 203018 51 chain 21449 chr12 133851895 + 101941229 101942339 THE1B 368 - 0 367 122337 18 1 2 104 804 47 28 1 0 85 1 15 68 chain 5853 chr12 133851895 + 101941867 101941953 L1MA3 4352 - 82 165 186656 10 2 0 69 1 0 4 chain 122809 chr12 133851895 + 101942345 101943882 THE1B-int 1605 - 5 1569 30112 4 0 1 62 0 1 1075 0 25 396 chain 95280 chr12 133851895 + 101951940 101953034 L1PA5 6144 + 5050 6143 38012 326 1 0 163 0 1 209 1 0 394 chain 3359 chr12 133851895 + 101979159 101979205 Charlie2b 853 - 45 90 217890 8 1 0 37 chain 18385 chr12 133851895 + 101979694 101979891 L1PA2 6032 - 1173 1370 131830 197 chain 107699 chr12 133851895 + 101979891 101981063 L1PA2 6032 + 4859 6029 34799 1160 2 0 10 chain 27618 chr12 133851895 + 102044088 102044464 THE1C 375 - 2 375 94300 24 1 0 152 15 16 61 4 1 119 chain 20823 chr12 133851895 + 102051687 102051927 AluY 311 + 61 301 124529 72 1 0 18 1 2 148 chain 3538 chr12 133851895 + 102064880 102064917 MER3 215 - 3 40 214738 37 chain 38276 chr12 133851895 + 102080859 102081306 L1PA5 6144 - 6 463 71743 394 6 16 47 chain 5561 chr12 133851895 + 102089158 102089239 MER44B 551 - 398 483 189472 45 5 9 31 chain 8149 chr12 133851895 + 102173591 102173682 5S 121 + 0 91 170235 91 chain 15051 chr12 133851895 + 102185143 102185342 MER30 238 - 5 202 141170 108 13 11 78 chain 3029 chr12 133851895 + 102205715 102205747 MSTA 426 - 226 258 224383 32 chain 3706 chr12 133851895 + 102207435 102207494 Charlie1b 519 - 0 60 211875 33 9 10 17 chain 27221 chr12 133851895 + 102215909 102216197 AluYf4 310 + 0 288 95521 288 chain 11542 chr12 133851895 + 102244852 102245109 MER66B 489 - 0 258 154135 21 20 19 43 69 72 46 1 0 57 chain 4046 chr12 133851895 + 102258880 102258943 HUERS-P1-int 2401 - 2139 2196 206719 19 6 1 12 1 0 25 chain 22463 chr12 133851895 + 102259343 102261195 LTR8 732 - 0 570 118175 113 0 1 47 1540 266 127 9 0 16 chain 21596 chr12 133851895 + 102263072 102264403 Tigger1 2417 + 1176 1917 121785 28 14 15 75 6 11 79 0 3 19 0 3 33 991 389 86 chain 5096 chr12 133851895 + 102265519 102265579 U6 107 - 47 107 194120 60 chain 20115 chr12 133851895 + 102266029 102266300 LTR8 732 + 0 282 126779 15 0 1 11 1 12 113 7 6 124 chain 8755 chr12 133851895 + 102314071 102314164 AluYb8 318 - 7 100 166891 93 chain 5076 chr12 133851895 + 102321565 102321622 HY3 101 - 44 101 194330 57 chain 4208 chr12 133851895 + 102329089 102329160 MER5A 189 - 12 85 204445 47 13 15 11 chain 16688 chr12 133851895 + 102344434 102344683 MER30 238 - 0 237 136441 39 3 0 12 4 0 11 29 0 38 0 24 113 chain 22289 chr12 133851895 + 102440078 102440361 AluSc 308 - 15 300 118951 124 0 1 110 9 10 40 chain 83481 chr12 133851895 + 102482488 102483505 SVA_A 1864 - 0 962 42125 291 0 2 244 40 12 34 3 0 37 3 0 55 18 0 46 1 0 119 2 0 37 2 0 85 chain 5248 chr12 133851895 + 102514981 102515162 MER58B 340 + 0 197 192540 16 7 26 14 12 8 11 63 64 58 chain 3817 chr12 133851895 + 102521722 102521905 L1MA8 2339 - 20 179 210130 20 110 92 11 6 0 36 chain 517663 chr12 133851895 + 102531303 102537391 L1PA5 6144 - 18 6144 5404 5 0 1 844 6 5 20 0 1 134 0 18 753 0 4 60 0 2 1394 0 1 570 3 1 958 0 1 134 0 1 50 9 0 201 0 1 363 3 4 168 12 18 48 2 1 230 1 15 120 chain 2947 chr12 133851895 + 102539647 102539678 U2 167 - 136 167 226141 31 chain 158718 chr12 133851895 + 102539742 102541503 L1PA3long 6157 + 4394 6157 23500 247 2 1 955 0 2 334 0 1 223 chain 49921 chr12 133851895 + 102549165 102549905 LTR17 781 + 0 769 59076 203 18 8 37 8 9 70 1 0 45 0 1 17 38 53 20 29 30 202 2 24 50 chain 22702 chr12 133851895 + 102619295 102619657 THE1B 368 - 19 368 117064 107 1 0 12 1 0 11 14 21 29 1 0 37 36 19 113 chain 5183 chr12 133851895 + 102630924 102631388 L1PA7 6471 - 6 467 19428 6 3 0 455 chain 75202 chr12 133851895 + 102631396 102632276 L1PA6 6164 - 2998 3885 45919 153 0 6 36 0 2 237 2 1 202 1 0 203 0 1 46 chain 245623 chr12 133851895 + 102632278 102635177 L1PA6 6164 + 3251 6162 16476 19 2 1 29 1 0 209 4 7 157 0 2 23 2 0 53 0 1 1304 0 1 4 1 0 84 0 8 39 5 6 476 0 1 487 chain 95410 chr12 133851895 + 102636964 102638516 L1PB3 3668 - 102 1611 37981 27 13 11 16 4 0 9 4 0 2 0 1 18 59 45 28 23 18 101 1 0 57 7 9 57 19 20 61 10 11 72 3 0 16 2 0 119 0 1 26 2 0 8 6 0 3 2 0 8 0 1 64 1 0 42 0 1 8 1 5 36 1 0 37 0 1 96 38 38 376 9 0 60 chain 55390 chr12 133851895 + 102644413 102645014 SVA_B 1603 - 0 601 55466 601 chain 24552 chr12 133851895 + 102646357 102648555 L1PA7 6471 - 1449 3639 19428 713 18 0 10 0 10 459 1 0 252 0 1 745 chain 118831 chr12 133851895 + 102648555 102649978 L1PA7 6471 + 5027 6459 31377 322 0 1 109 0 1 26 3 0 21 0 3 38 0 1 23 0 1 49 1 2 514 0 1 86 0 3 231 chain 31704 chr12 133851895 + 102674319 102674776 MLT2A1 477 - 0 477 81323 13 0 1 26 6 0 7 8 50 43 20 0 60 1 0 104 6 10 163 chain 5293 chr12 133851895 + 102674791 102674853 Tigger3b 1229 - 734 796 192090 62 chain 208506 chr12 133851895 + 102679535 102683268 L1PA10 4194 - 1155 4019 18605 75 2 1 280 3 7 13 1 0 7 1 0 153 0 2 19 6 5 355 0 1 285 0 1 570 1 2 597 0 1 18 842 26 121 1 0 13 4 0 13 0 4 22 0 1 44 19 8 15 1 0 5 0 3 6 7 6 4 1 0 21 3 1 10 60 34 4 1 0 15 2 0 17 9 8 5 1 0 9 2 0 10 13 7 8 2 0 8 3 0 9 2 0 15 chain 71233 chr12 133851895 + 102681959 102682763 L1PA4 6152 - 0 805 47838 339 0 1 465 chain 22247 chr12 133851895 + 102683449 102683815 THE1B 368 + 0 368 119131 44 0 15 49 4 3 9 2 1 6 11 0 45 2 1 25 2 0 85 22 25 60 chain 123225 chr12 133851895 + 102683815 102685387 THE1B-int 1605 + 0 1600 29971 246 0 1 11 0 1 76 0 1 72 0 1 16 0 26 5 1 0 542 12 11 591 chain 25418 chr12 133851895 + 102685392 102685750 THE1B 368 + 0 368 102601 44 11 26 47 1 0 55 2 1 25 2 0 22 1 0 148 chain 4920 chr12 133851895 + 102701188 102701278 MER41-int 2638 + 86 170 196060 17 18 9 32 0 3 23 chain 547013 chr12 133851895 + 102701559 102707546 L1PA2 6032 - 7 6032 1828 262 1 0 1398 0 16 1294 1 0 597 0 2 57 0 1 1073 0 4 835 0 17 469 chain 93103 chr12 133851895 + 102708557 102709734 MER57-int 2662 + 526 1760 38629 345 0 8 149 0 3 44 0 33 258 0 2 36 1 0 90 4 0 107 0 16 143 chain 13187 chr12 133851895 + 102715397 102715583 MER30 238 - 1 201 147517 38 3 0 61 2 0 8 4 23 70 chain 34886 chr12 133851895 + 102718728 102719112 L1PA3long 6157 - 0 383 76359 155 1 0 228 chain 46489 chr12 133851895 + 102719735 102720348 THE1C-int 1605 + 0 628 61611 14 2 1 92 0 3 219 0 6 97 13 20 176 chain 27774 chr12 133851895 + 102731338 102731652 AluY 311 + 0 310 93781 130 4 0 180 chain 4774 chr12 133851895 + 102752438 102752497 MLT1I 406 + 83 142 197654 59 chain 4495 chr12 133851895 + 102761702 102761757 MER77B 728 + 273 328 200843 55 chain 13012 chr12 133851895 + 102784113 102784269 L1PA7 6471 + 6314 6470 148195 156 chain 5531 chr12 133851895 + 102794990 102795055 MIRb 242 - 108 173 189742 65 chain 5699 chr12 133851895 + 102826560 102826623 L1PA4 6152 + 6080 6143 188119 63 chain 67126 chr12 133851895 + 102827990 102828724 L1PA2 6032 - 64 801 49604 449 0 3 285 chain 227575 chr12 133851895 + 102838746 102841496 L1PA7 6471 - 1231 4004 17447 541 0 1 211 0 4 359 0 11 276 2 1 296 6 7 105 0 1 4 1 0 158 10 8 542 0 5 66 10 0 8 0 11 104 0 2 25 0 1 26 chain 95440 chr12 133851895 + 102841496 102843321 L1PA7 6471 + 5256 6461 37913 316 0 1 50 635 7 49 23 24 479 0 3 135 0 1 97 0 9 8 7 0 26 chain 56772 chr12 133851895 + 102841867 102842480 L1HS 6032 + 5418 6032 54671 17 0 1 596 chain 12381 chr12 133851895 + 102845544 102845713 THE1C 375 + 6 184 150707 49 7 16 113 chain 459455 chr12 133851895 + 102882271 102887855 L1PA7 6471 - 6 5703 8425 6 2 0 146 7 8 120 0 19 326 4 1 129 0 1 88 1 0 277 0 13 9 13 0 136 20 0 158 0 1 72 5 0 429 0 6 986 0 1 36 1 0 656 0 71 59 0 3 133 0 2 212 1 26 171 6 5 353 1 0 337 0 1 181 3 19 500 chain 19487 chr12 133851895 + 102901217 102901577 THE1B 368 + 0 367 128697 105 16 18 46 65 71 66 7 6 55 chain 27510 chr12 133851895 + 102930614 102931040 L1PA16 3655 - 36 442 94627 14 28 13 12 12 10 121 1 0 158 2 0 78 chain 5834 chr12 133851895 + 102934429 102934555 L1MA4 2864 - 30 140 186820 17 16 8 42 2 0 22 13 7 14 chain 28802 chr12 133851895 + 102954542 102954858 AluYb8 318 - 5 318 89894 181 3 0 132 chain 18901 chr12 133851895 + 102957588 102957798 L1PA5 6144 + 5934 6144 130362 210 chain 6729 chr12 133851895 + 102965835 102965985 MSTB2 466 + 73 248 179477 58 49 50 11 0 20 26 0 4 6 chain 24880 chr12 133851895 + 102969478 102969810 THE1A 353 + 1 333 105460 80 3 4 21 5 4 223 chain 48084 chr12 133851895 + 102973260 102973824 L1PA5 6144 + 5584 6144 60414 292 4 1 129 0 1 131 2 0 6 chain 75546 chr12 133851895 + 102976419 102977580 L1PA13 3608 + 2377 3548 45747 31 6 11 120 7 20 84 4 0 78 0 1 73 13 24 154 2 0 12 1 2 41 0 1 90 10 9 31 2 1 113 2 0 62 1 0 57 6 4 36 6 9 7 2 0 18 1 0 16 1 4 11 16 7 14 1 0 6 1 2 9 4 1 12 chain 174255 chr12 133851895 + 103000053 103002271 L1P2 5180 - 999 3217 21569 419 1 0 4 1 2 240 1 0 193 3 4 23 2 3 78 1 0 286 0 4 6 7 3 205 3 4 563 6 5 176 chain 86157 chr12 133851895 + 103002271 103003293 L1PA7 6471 + 5436 6467 41033 178 0 3 92 0 1 95 0 3 648 0 2 9 chain 107703 chr12 133851895 + 103051319 103052701 THE1B-int 1605 - 197 1605 34798 660 6 4 66 0 3 219 28 53 403 chain 45030 chr12 133851895 + 103055048 103055561 MER9a1 513 - 0 513 63019 513 chain 382911 chr12 133851895 + 103055561 103060133 HERVK9-int 4720 - 0 4684 10667 174 0 28 73 8 104 1005 0 2 6 16 14 405 1 0 439 0 1 4 1 0 714 9 3 149 0 1 1296 1 2 138 1 0 29 1 0 9 1 0 63 16 12 13 chain 44694 chr12 133851895 + 103061453 103061966 MER9a1 513 - 0 513 63384 513 chain 5342 chr12 133851895 + 103082272 103082338 MER5A 189 - 114 180 191626 66 chain 242680 chr12 133851895 + 103091120 103094686 L1MA2 4263 + 504 4114 16630 154 21 30 98 0 8 185 9 10 49 6 7 25 0 1 69 4 7 77 5 8 104 22 14 38 15 9 52 1 4 86 4 0 82 8 11 94 3 2 59 0 1 183 1 0 4 1 0 60 1 2 175 0 1 32 4 3 181 0 2 83 15 18 103 2 0 5 8 7 7 0 1 42 5 0 7 0 3 5 1 0 53 2 0 8 0 2 71 5 19 37 0 1 190 0 7 18 0 2 11 0 1 423 0 5 6 1 0 18 5 2 77 1 0 126 19 17 66 0 6 26 73 71 63 0 1 4 12 15 11 0 1 35 1 0 9 chain 3310 chr12 133851895 + 103121754 103121810 MIR 256 + 168 232 218765 16 6 14 34 chain 21480 chr12 133851895 + 103127248 103127531 AluSp 311 + 0 292 122218 69 13 22 201 chain 27658 chr12 133851895 + 103136447 103136789 THE1A 353 + 12 353 94188 98 1 0 243 chain 111336 chr12 133851895 + 103136881 103138183 L1PA5 6144 - 0 1276 33849 11 1 3 858 1 0 5 0 1 318 31 1 33 0 1 29 0 1 15 chain 7983 chr12 133851895 + 103154283 103154461 MER58A 224 + 39 224 171155 44 14 0 7 53 74 60 chain 4810 chr12 133851895 + 103183163 103183218 MER41B 635 - 99 154 197234 55 chain 41781 chr12 133851895 + 103197226 103197695 L1PA4 6152 - 0 469 66925 469 chain 12602 chr12 133851895 + 103203613 103203752 L1PA3long 6157 - 0 139 149830 139 chain 3734 chr12 133851895 + 103206364 103206464 LTR33 499 + 115 217 211402 24 44 46 32 chain 16220 chr12 133851895 + 103219862 103220084 THE1C 375 - 39 261 137695 122 5 6 4 1 0 23 1 0 4 0 1 62 chain 551950 chr12 133851895 + 103220955 103226986 L1PA2 6032 - 0 6032 1197 336 0 1 2134 2 1 1048 1 2 2254 1 0 183 0 1 72 chain 496851 chr12 133851895 + 103250120 103255758 L1PA5 6144 + 488 6144 7016 652 0 5 263 1 6 289 1 0 449 1 0 534 0 3 513 1 0 133 0 1 345 0 1 373 5 0 399 8 3 200 1 2 638 0 4 670 0 2 54 0 9 108 chain 3942 chr12 133851895 + 103287878 103287944 L1PREC2 3366 - 329 393 208244 27 10 8 29 chain 9255 chr12 133851895 + 103321936 103322126 L1MA3 4352 - 0 179 164286 22 6 2 11 1 0 24 15 13 22 8 6 17 4 0 30 0 2 30 chain 9877 chr12 133851895 + 103331007 103331187 L1MA3 4352 - 4077 4255 161181 34 0 3 26 1 0 4 6 5 25 0 18 4 21 0 59 chain 123466 chr12 133851895 + 103391276 103392851 THE1B-int 1605 - 5 1605 29894 319 2 0 105 1 0 4 4 5 711 1 26 24 0 1 38 0 1 366 chain 38804 chr12 133851895 + 103400580 103401112 MLT2A2 560 - 0 560 71013 72 0 1 62 8 19 140 0 1 4 1 0 53 23 39 169 chain 12829 chr12 133851895 + 103415596 103415865 THE1C 375 + 0 283 148933 78 0 13 36 8 12 41 84 81 22 chain 10712 chr12 133851895 + 103422639 103422788 THE1B 368 - 211 361 157364 40 8 9 101 chain 69105 chr12 133851895 + 103450975 103452219 L1PA8 5853 - 0 963 48761 93 1 0 19 2 1 47 7 6 8 1 0 70 6 4 41 1 0 304 0 1 83 6 7 68 300 0 17 0 2 25 0 24 23 2 0 120 chain 207463 chr12 133851895 + 103452219 103454789 L1PA8 5853 + 2298 4885 18683 183 0 4 61 3 4 252 0 4 185 0 1 95 1 0 399 0 1 107 8 3 20 0 1 436 0 4 113 0 2 359 0 1 39 1 2 131 0 1 152 11 13 14 chain 440238 chr12 133851895 + 103456704 103462258 HERVL-int 5654 + 78 5654 9051 202 33 40 252 1 2 98 0 1 163 1 2 218 5 9 58 0 1 207 0 1 4 6 5 72 7 6 487 0 2 123 0 1 1060 10 6 495 0 1 4 1 0 184 0 1 146 0 5 16 3 5 107 1 0 161 0 1 389 0 6 94 4 0 116 32 15 130 18 28 426 0 2 4 1 0 32 0 5 20 6 4 34 0 2 123 chain 26440 chr12 133851895 + 103462258 103462811 MLT2A2 560 + 0 560 98271 169 65 63 70 3 112 44 0 5 38 122 17 42 chain 12250 chr12 133851895 + 103469832 103470010 L1PA7 6471 + 6285 6459 151205 30 0 2 10 1 0 30 13 8 94 chain 10353 chr12 133851895 + 103476364 103476482 L1PA5 6144 + 6025 6143 158892 118 chain 12727 chr12 133851895 + 103496253 103496447 MER107 203 + 3 203 149345 84 14 16 38 5 9 53 chain 5026 chr12 133851895 + 103507307 103507381 MER20 218 + 39 117 194869 39 5 9 30 chain 105242 chr12 133851895 + 103550306 103551585 L1PA8A 6298 - 7 1295 35439 136 1 3 192 0 1 389 0 2 84 1 0 136 0 5 340 chain 42606 chr12 133851895 + 103562432 103562938 L1PA7 6471 + 5954 6460 65890 506 chain 7253 chr12 133851895 + 103562983 103563100 LTR9 672 + 328 487 175745 11 4 5 8 1 0 20 3 45 70 chain 94252 chr12 133851895 + 103594554 103595811 HSMAR1 1287 - 0 1263 38277 575 4 0 39 0 7 6 7 0 93 16 13 281 0 3 62 0 2 12 0 1 38 0 3 27 5 9 92 chain 108996 chr12 133851895 + 103612704 103614180 L1PA7 6471 + 310 6466 34442 101 0 1 104 71 4736 369 8 7 508 0 1 173 0 14 142 chain 5403 chr12 133851895 + 103612918 103612975 L1P2 5180 - 2960 3017 190957 57 chain 39875 chr12 133851895 + 103615893 103616345 LTR7 482 - 0 482 69498 190 0 31 12 1 0 249 chain 285548 chr12 133851895 + 103618155 103621881 HERVH-int 3825 - 0 3825 14316 225 3 8 254 7 221 36 9 11 212 1 2 5 1 0 25 62 61 101 1 0 948 8 35 171 0 1 67 0 1 217 17 2 332 1 0 108 0 3 49 9 28 45 24 0 26 66 0 13 1 0 5 40 0 9 28 0 24 1 0 10 1 0 38 5 0 309 0 11 212 chain 40561 chr12 133851895 + 103621883 103622333 LTR7 482 - 0 482 68492 90 0 1 96 0 31 264 chain 136371 chr12 133851895 + 103645744 103647459 L1PA8 5853 - 0 1872 26772 93 1 0 19 2 1 37 6 178 516 2 0 95 9 0 170 7 5 376 7 8 21 1 0 353 chain 4094 chr12 133851895 + 103648056 103648105 L1PA8 5853 + 5804 5853 206018 49 chain 6837 chr12 133851895 + 103648124 103648209 L1P3 4156 - 118 201 178673 30 2 0 53 chain 55779 chr12 133851895 + 103656425 103657084 L1PA6 6164 + 5499 6160 55257 332 0 1 139 4 5 184 chain 18670 chr12 133851895 + 103664358 103664556 L1PA3long 6157 - 0 198 131031 198 chain 68717 chr12 133851895 + 103680731 103681494 L1PA4 6152 + 5390 6152 48938 502 1 0 260 chain 133001 chr12 133851895 + 103689655 103691152 L1PA5 6144 - 12 1514 27418 562 0 2 267 0 4 81 1 0 586 chain 110100 chr12 133851895 + 103691153 103692383 L1PA5 6144 + 3403 4632 34182 106 2 0 5 0 1 1117 chain 7539 chr12 133851895 + 103698771 103698933 MER30 238 - 0 180 173935 45 3 1 10 13 8 34 0 2 7 23 46 27 chain 18498 chr12 133851895 + 103703002 103703309 Tigger2 2703 + 2326 2648 131504 83 1 4 48 2 0 6 3 12 94 0 4 7 40 41 23 chain 2783 chr12 133851895 + 103711546 103711590 MADE2 80 - 9 54 228972 14 3 4 27 chain 86356 chr12 133851895 + 103714856 103715798 L1PA3long 6157 + 5210 6152 41016 942 chain 14533 chr12 133851895 + 103723104 103723324 L1PA8 5853 + 5637 5853 142790 41 5 4 8 1 0 50 2 1 16 7 6 90 chain 4489 chr12 133851895 + 103735683 103735792 MLT2B2 565 + 454 563 200918 34 46 46 29 chain 36764 chr12 133851895 + 103740836 103741278 L1PA7 6471 - 4 445 73855 6 4 0 121 0 3 311 chain 31502 chr12 133851895 + 103750716 103751069 L1PA3long 6157 + 5789 6142 81643 109 1 0 114 1 2 128 chain 395296 chr12 133851895 + 103755845 103761218 L1PB1 5432 + 12 5427 10267 7 1 0 387 2 0 40 5 4 38 0 3 6 2 12 91 1 4 78 10 9 63 15 13 7 0 2 53 0 1 456 0 4 42 0 2 69 1 5 173 0 1 35 0 2 606 14 16 58 0 1 158 9 12 28 2 0 9 0 1 9 0 1 68 0 5 27 0 1 4 4 3 206 2 1 53 0 3 95 25 31 507 6 5 178 0 1 4 9 8 27 0 2 214 0 13 647 0 1 58 0 3 115 0 8 288 6 11 9 1 0 24 1 0 9 1 0 11 18 12 50 2 1 16 1 0 53 30 18 19 2 0 4 1 0 10 9 7 22 1 0 21 1 0 13 1 0 18 2 0 5 chain 52510 chr12 133851895 + 103763530 103764369 L1PA15 4387 + 3544 4357 57298 268 2 0 15 4 0 64 3 1 41 1 0 66 1 2 19 4 8 72 7 6 25 11 10 17 5 3 6 2 0 18 1 0 27 10 5 50 6 3 44 3 1 14 5 0 28 chain 33534 chr12 133851895 + 103769888 103770344 L1PA8 5853 + 5398 5847 78340 115 0 2 49 1 0 45 2 0 15 2 0 55 1 0 10 1 0 45 8 7 19 2 1 86 chain 46730 chr12 133851895 + 103807271 103808159 L1PB1 5432 - 2 849 61432 4 1 0 8 1 0 14 1 0 7 7 6 21 1 0 20 29 24 18 24 12 15 1 0 45 6 5 9 3 2 51 19 13 12 9 6 24 43 16 15 4 0 6 12 16 51 11 24 104 0 8 35 0 1 25 0 1 191 3 0 38 chain 526863 chr12 133851895 + 103818154 103824884 L1PA7 6471 + 0 6467 4514 258 5 10 93 1 14 7 12 0 22 73 56 152 1 2 471 0 1 177 275 0 130 0 3 274 9 10 167 2 1 204 0 4 499 0 1 76 15 0 69 26 21 110 0 1 263 0 4 338 0 6 212 0 1 89 0 1 86 2 0 100 0 1 1411 1 0 17 8 7 77 0 10 163 1 0 815 1 15 18 chain 2416 chr12 133851895 + 103819432 103819462 L1PA7 6471 + 1268 1298 234070 30 chain 17998 chr12 133851895 + 103819473 103819689 L1P3 4156 - 3291 3507 132861 216 chain 548589 chr12 133851895 + 103828166 103834198 L1PA2 6032 + 1 6031 1629 2371 4 1 525 0 1 488 2 0 12 0 1 1507 0 1 1123 chain 93154 chr12 133851895 + 103839907 103841171 L1PB1 5432 + 1070 3414 38612 166 1 3 50 4 6 92 16 24 100 15 15 97 0 1 57 1 0 390 0 1 172 2 1069 101 chain 95757 chr12 133851895 + 103841177 103842375 L1PB1 5432 + 3421 4625 37882 308 1 0 76 0 1 95 0 1 60 1 0 136 0 2 371 0 4 150 chain 18900 chr12 133851895 + 103842383 103842644 L1PB1 5432 + 4635 4889 130365 177 2 1 65 6 0 11 chain 17523 chr12 133851895 + 103842654 103842946 L1PB1 5432 + 4897 5142 134198 201 62 16 20 1 0 8 chain 4605 chr12 133851895 + 103842949 103843032 L1PB1 5432 + 5144 5220 199572 12 2 0 3 2 0 9 6 4 40 1 0 8 chain 3597 chr12 133851895 + 103843052 103843095 L1PB1 5432 + 5238 5281 213701 43 chain 7053 chr12 133851895 + 103843096 103843257 L1PB1 5432 + 5281 5422 177079 15 3 0 8 13 4 18 26 21 23 1 0 22 1 0 12 1 0 18 chain 46641 chr12 133851895 + 103846288 103846814 L1PA5 6144 + 5618 6144 61502 526 chain 98294 chr12 133851895 + 103858829 103860039 L1PA10 4194 - 49 1261 37220 29 3 0 179 0 2 490 1 4 311 2 0 120 0 2 75 chain 511264 chr12 133851895 + 103877450 103883862 L1PA6 6164 - 7 6164 6045 146 7 8 681 0 4 15 0 1 65 1 0 193 0 1 74 314 0 1278 0 13 410 0 4 74 0 1 73 0 1 74 0 1 706 0 1 475 0 5 386 0 1 85 7 8 183 6 10 112 0 1 259 1 18 255 17 18 35 0 1 114 0 1 366 chain 12941 chr12 133851895 + 103900268 103900431 Tigger3a 397 + 143 336 148466 122 0 30 41 chain 48320 chr12 133851895 + 103903531 103904275 L1PB1 5432 + 4714 5422 60228 90 1 0 71 0 1 227 5 2 10 1 0 23 1 0 4 22 17 9 2 0 52 6 5 13 1 0 17 2 0 26 1 0 13 25 14 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 19940 chr12 133851895 + 103946508 103946867 THE1D 372 - 2 372 127331 124 63 68 6 0 6 64 1 0 5 20 21 76 chain 25948 chr12 133851895 + 103948931 103949275 THE1B 368 - 0 368 100221 49 5 13 137 1 0 92 16 33 44 chain 3451 chr12 133851895 + 103994320 103994415 MLT1A 405 - 310 405 216194 17 29 28 20 5 6 24 chain 542817 chr12 133851895 + 104001167 104007606 L1PA5 6144 - 1 6144 2372 756 303 0 92 0 4 1349 0 1 1762 0 2 432 0 2 359 1 0 357 1 0 1027 chain 60758 chr12 133851895 + 104019151 104019836 L1PA4 6152 - 12 699 52446 148 0 1 178 0 1 359 chain 2867 chr12 133851895 + 104022153 104022197 MER96B 391 - 33 75 227561 21 3 1 20 chain 23559 chr12 133851895 + 104029827 104030083 L1PA4 6152 - 1 257 112802 256 chain 4196 chr12 133851895 + 104030149 104030207 LTR41 747 + 670 727 204594 16 1 0 41 chain 66195 chr12 133851895 + 104037583 104038308 SVA_D 2077 + 1189 2061 50005 119 0 147 606 chain 29434 chr12 133851895 + 104050455 104050763 AluYb8 318 - 10 318 86926 308 chain 57517 chr12 133851895 + 104094626 104095267 L1PA3long 6157 - 0 634 54227 154 7 0 480 chain 28468 chr12 133851895 + 104096072 104096376 AluYb8 318 - 15 318 91310 177 1 0 126 chain 25981 chr12 133851895 + 104136791 104137099 AluSp 311 - 3 310 100089 270 1 0 37 chain 24988 chr12 133851895 + 104229604 104229950 THE1A 353 - 12 353 104871 45 1 0 98 10 9 79 2 1 96 2 0 13 chain 121076 chr12 133851895 + 104229950 104231716 THE1A-int 1579 - 0 1579 30671 19 0 1 80 5 6 241 210 0 100 19 15 12 1 7 4 0 1 238 0 1 138 1 19 15 0 2 164 17 14 502 chain 6570 chr12 133851895 + 104260879 104260979 LTR49 580 - 0 99 180694 40 9 8 51 chain 69728 chr12 133851895 + 104268853 104269933 L1PA15 4387 + 3295 4287 48506 13 88 4 355 1 2 67 8 11 65 2 0 15 4 0 64 3 1 40 1 0 60 0 5 107 2 1 17 4 8 36 0 1 18 1 0 5 0 1 16 4 0 10 1 0 50 11 8 12 chain 22272 chr12 133851895 + 104280758 104281016 AluSp 311 + 1 259 119023 258 chain 29449 chr12 133851895 + 104293414 104293724 AluYa5 310 - 0 310 86853 310 chain 20069 chr12 133851895 + 104341818 104342071 AluSg7 307 - 15 269 126922 25 6 8 181 1 0 40 chain 4143 chr12 133851895 + 104357218 104357279 L1ME1 1623 - 1223 1285 205331 14 3 4 44 chain 22790 chr12 133851895 + 104366864 104367151 AluSp 311 - 14 300 116633 118 9 8 160 chain 7313 chr12 133851895 + 104369742 104369832 MSTD 398 - 306 398 175347 30 0 2 60 chain 4941 chr12 133851895 + 104397613 104397668 LTR45C 530 + 10 65 195787 55 chain 214488 chr12 133851895 + 104397723 104400157 L1PA5 6144 + 3697 6136 18194 769 6 5 1497 8 14 154 chain 27762 chr12 133851895 + 104401494 104401847 THE1A 353 + 0 353 93828 15 2 0 32 0 1 47 1 0 97 0 2 159 chain 123812 chr12 133851895 + 104401847 104403417 THE1A-int 1579 + 0 1574 29765 305 0 1 188 3 2 158 0 3 27 1 2 409 2 4 77 2 3 114 15 18 79 6 0 184 chain 22913 chr12 133851895 + 104403422 104403774 THE1A 353 + 0 353 116045 15 2 0 32 0 1 42 6 5 76 21 23 39 9 10 58 0 1 4 1 0 47 chain 7474 chr12 133851895 + 104412512 104412635 MER53 195 + 85 195 174313 21 0 2 68 20 5 14 chain 527126 chr12 133851895 + 104427948 104434081 L1PA6 6164 + 0 6162 4486 459 0 18 7 19 0 180 1 0 4 0 1 1231 0 9 742 1 0 538 0 1 50 0 4 87 0 15 390 6 7 925 0 1 1165 0 1 92 2 0 86 4 5 144 chain 7028 chr12 133851895 + 104441388 104441543 MLT1A0 366 - 212 366 177274 30 13 13 26 1 0 8 30 30 47 chain 5165 chr12 133851895 + 104445435 104445494 L1MA5A 2387 - 98 157 193400 59 chain 4666 chr12 133851895 + 104452839 104452926 MER44B 551 - 431 519 198903 50 19 20 18 chain 15864 chr12 133851895 + 104456690 104456957 MER1B 344 + 103 344 138760 26 5 6 127 2 0 5 39 14 63 chain 25654 chr12 133851895 + 104463473 104463808 L1PA8 5853 - 0 328 101474 93 1 0 19 2 1 43 4 3 15 1 0 71 2 0 46 1 0 37 chain 11744 chr12 133851895 + 104474009 104474224 MER2 342 - 0 225 153280 18 29 31 58 7 20 18 6 1 79 chain 8667 chr12 133851895 + 104519013 104519103 5S 121 + 0 90 167382 90 chain 5688 chr12 133851895 + 104560777 104560849 LTR71A 459 - 0 72 188223 72 chain 4776 chr12 133851895 + 104562308 104562359 LTR71A 459 + 0 51 197631 51 chain 16767 chr12 133851895 + 104563130 104563329 L1PA5 6144 - 10 208 136201 136 1 0 62 chain 19770 chr12 133851895 + 104595754 104596209 L1PB1 5432 - 10 420 127904 18 1 0 12 1 0 22 1 0 15 36 31 16 23 12 16 0 12 32 1 0 15 2 1 50 4 2 8 0 2 14 1 0 6 1 0 24 49 16 42 6 5 39 chain 39092 chr12 133851895 + 104624452 104624979 LTR9B 643 - 89 643 70613 23 0 14 41 6 19 100 0 1 147 9 8 201 chain 66632 chr12 133851895 + 104625401 104627308 HUERS-P3b-int 2065 - 182 1125 49813 52 4 1 11 4 1 17 2 0 72 3 1 91 1 0 23 1 0 13 2 0 84 29 2 44 1 0 81 1 2 60 6 5 28 9 10 13 301 0 51 2 3 20 0 1 70 624 0 187 chain 27458 chr12 133851895 + 104626553 104627117 LTR10E 629 - 78 624 94792 23 1 0 12 58 59 124 2 0 18 29 33 24 62 39 53 1 0 18 0 5 115 1 0 23 chain 20306 chr12 133851895 + 104631929 104632212 HUERS-P3b-int 2065 + 584 866 126224 12 0 6 85 4 0 87 1 0 54 1 0 27 1 0 11 chain 24879 chr12 133851895 + 104639012 104639323 AluSp 311 + 5 310 105464 145 14 8 152 chain 20859 chr12 133851895 + 104649309 104649554 AluSp 311 + 15 265 124432 59 0 6 52 1 0 133 chain 26066 chr12 133851895 + 104653264 104653565 AluSp 311 - 7 311 99772 210 0 3 91 chain 48202 chr12 133851895 + 104662983 104664377 Tigger1 2417 - 525 1271 60315 49 19 20 44 0 1 24 673 15 130 13 10 197 7 9 84 6 8 43 8 15 97 chain 28627 chr12 133851895 + 104664834 104665569 LTR7B 505 - 11 505 90623 40 14 13 65 313 0 11 1 0 65 0 88 17 35 11 69 0 10 105 chain 38448 chr12 133851895 + 104665847 104666666 LTR10F 562 - 0 562 71520 232 0 2 66 0 59 47 4 3 47 0 1 34 318 0 71 chain 25224 chr12 133851895 + 104685258 104685559 AluSg4 309 - 8 309 103614 301 chain 87071 chr12 133851895 + 104687439 104688452 LTR13 1007 - 0 1007 40750 572 19 8 356 0 5 66 chain 82809 chr12 133851895 + 104716577 104717542 SVA_F 1814 - 0 1128 42415 581 0 77 28 0 1 165 0 15 49 1 0 10 0 1 32 1 0 8 27 59 13 1 0 6 0 40 43 chain 2275 chr12 133851895 + 104717452 104717479 SVA_F 1814 - 805 832 110779 27 chain 25866 chr12 133851895 + 104724362 104724665 AluSq10 312 - 12 312 100584 9 2 0 171 1 0 120 chain 25622 chr12 133851895 + 104726255 104726552 AluSp 311 + 10 307 101610 297 chain 6756 chr12 133851895 + 104738441 104738561 L1MA5A 2387 - 102 194 179278 54 25 0 12 3 0 26 chain 15303 chr12 133851895 + 104747435 104747784 THE1B 368 - 0 365 140485 56 10 10 62 125 134 66 0 1 20 0 6 10 chain 3606 chr12 133851895 + 104762176 104762216 MIR 256 + 47 87 213535 40 chain 4991 chr12 133851895 + 104779436 104779516 HAL1-2a_MD 234 + 0 83 195239 23 3 0 21 7 13 26 chain 543903 chr12 133851895 + 104782352 104788483 L1PA4 6152 - 8 6152 2227 105 0 1 730 0 4 337 1 0 692 0 1 592 1 0 984 0 1 376 0 1 918 4 8 330 0 2 958 0 1 103 chain 25664 chr12 133851895 + 104796075 104796419 L1PA8 5853 - 0 337 101432 93 1 0 19 2 1 46 2 1 14 1 0 71 2 0 44 1 0 48 chain 24945 chr12 133851895 + 104797609 104797899 AluSp 311 + 2 292 105079 290 chain 23558 chr12 133851895 + 104886531 104886825 AluSg 306 + 2 293 112807 121 1 0 158 2 0 12 chain 3445 chr12 133851895 + 104896757 104896814 MER5A1 166 - 108 166 216284 30 7 8 20 chain 6116 chr12 133851895 + 104921016 104921093 MLT1B 390 + 295 374 184305 33 0 2 44 chain 3484 chr12 133851895 + 104933525 104933603 MER2B 336 - 10 89 215610 27 27 28 24 chain 4458 chr12 133851895 + 104953644 104953725 MADE1 96 - 1 96 201255 36 2 0 7 14 30 22 chain 94907 chr12 133851895 + 104965533 104966605 L1PA4 6152 - 2043 3116 38120 908 1 0 125 0 2 38 chain 181844 chr12 133851895 + 104966609 104968641 L1PA4 6152 + 4106 6152 20802 245 0 4 78 0 1 1257 0 2 308 2 3 34 0 1 102 0 5 6 chain 3298 chr12 133851895 + 104971084 104971131 L1MB3 1562 - 7 54 219008 16 0 1 15 1 0 15 chain 19859 chr12 133851895 + 104999137 104999381 AluYk4 311 + 62 306 127624 244 chain 30338 chr12 133851895 + 105002033 105002410 MER83 447 + 28 405 83811 377 chain 26457 chr12 133851895 + 105007167 105007548 MSTA 426 + 0 426 98217 22 9 4 73 0 1 8 0 21 5 0 3 99 2 0 60 1 21 20 5 12 77 chain 14310 chr12 133851895 + 105031114 105031279 L1PA4 6152 + 5991 6152 143532 155 4 0 6 chain 3561 chr12 133851895 + 105094311 105094351 MIR 256 + 111 151 214304 40 chain 54416 chr12 133851895 + 105139142 105139854 L1PA13 3608 - 160 863 56081 5 1 0 47 2 0 5 1 0 56 1 0 62 2 0 114 1 0 31 1 0 383 chain 256617 chr12 133851895 + 105199856 105202680 L1PA4 6152 - 13 2837 15903 1362 0 1 599 1 0 862 chain 3399 chr12 133851895 + 105211724 105211778 L1MA8 2339 + 2215 2266 217083 17 2 0 24 1 0 10 chain 198771 chr12 133851895 + 105218790 105221634 HUERS-P2-int 2744 + 2 2742 19299 14 13 4 11 4 0 23 1 0 32 2 0 5 1 0 53 2 0 16 36 30 73 40 32 20 51 27 91 1 0 8 1 0 22 1 0 553 1 0 367 0 1 262 0 3 343 12 2 99 1 0 158 15 0 11 4 0 108 1 0 4 1 0 48 0 12 7 13 0 18 0 3 82 5 0 37 2 1 11 1 0 4 6 4 15 1 0 17 0 3 20 3 0 32 2 1 9 2 0 5 2 0 12 2 0 27 chain 6815 chr12 133851895 + 105240603 105240906 L1MCc 1008 + 338 631 178835 35 21 15 11 13 11 28 146 144 49 chain 3482 chr12 133851895 + 105241514 105241555 MER6B 211 - 1 42 215637 41 chain 57760 chr12 133851895 + 105251143 105251788 L1PA5 6144 + 5496 6143 54104 242 2 0 181 0 4 220 chain 16127 chr12 133851895 + 105253956 105254176 L1PA8 5853 + 5631 5853 137975 32 0 3 13 1 0 9 1 3 49 2 1 19 1 0 93 chain 510385 chr12 133851895 + 105272110 105278252 L1PA5 6144 - 18 6144 6131 748 0 1 83 1 0 18 1 5 256 1 15 423 8 32 166 43 0 775 0 1 441 1 0 358 1 3 487 3 1 234 10 9 898 16 7 60 0 3 34 5 6 112 25 0 816 7 21 66 0 2 45 chain 122118 chr12 133851895 + 105285426 105287499 L1MA2 4263 + 2373 4114 30339 15 5 4 161 0 4 87 6 4 35 7 5 9 0 1 44 321 1 171 22 21 103 4 7 23 1 3 150 3 7 97 1 0 4 1 2 243 2 0 10 13 9 69 1 0 134 13 10 107 2 0 6 1 2 37 1 0 6 2 1 93 7 0 26 0 1 19 1 0 10 chain 131396 chr12 133851895 + 105298305 105299856 LTR12C 1709 - 0 1709 27778 204 1 0 277 0 4 107 3 1 5 1 0 115 0 159 523 1 0 4 0 1 201 8 7 101 chain 95213 chr12 133851895 + 105309127 105310172 L1PA3long 6157 - 1581 2625 38030 87 1 0 957 chain 144498 chr12 133851895 + 105310175 105311762 L1PA3long 6157 + 4569 6157 25398 1303 0 3 10 0 1 130 1 0 136 2 0 5 chain 26702 chr12 133851895 + 105319054 105319354 AluYk4 311 + 0 300 97316 300 chain 6011 chr12 133851895 + 105326045 105326121 L1PB3 3668 + 2388 2464 185126 76 chain 6658 chr12 133851895 + 105330100 105330184 Tigger3b 1229 + 442 526 180028 84 chain 13058 chr12 133851895 + 105334130 105334277 L1PA4 6152 + 5996 6143 148001 147 chain 9675 chr12 133851895 + 105335523 105335655 L1PA8 5853 + 5723 5853 162216 17 2 1 19 1 0 93 chain 28603 chr12 133851895 + 105337496 105337822 LTR17 781 + 0 326 90721 326 chain 24470 chr12 133851895 + 105343366 105343649 AluSp 311 - 17 300 107704 283 chain 5152 chr12 133851895 + 105345537 105345617 MADE1 96 + 0 96 193528 49 11 27 20 chain 18444 chr12 133851895 + 105369090 105369291 L1PA5 6144 - 14 215 131658 201 chain 9287 chr12 133851895 + 105376259 105376373 MSTA 426 + 7 121 164126 114 chain 8129 chr12 133851895 + 105391182 105391273 L1PA3long 6157 + 6061 6152 170342 91 chain 530150 chr12 133851895 + 105401334 105407758 L1PA7 6471 - 49 6471 4174 101 7 0 7 0 7 296 0 6 155 0 1 77 0 10 58 1 4 83 0 3 194 0 1 629 0 9 110 0 8 24 1 0 33 1 0 61 0 5 846 12 1 620 1 0 19 0 1 544 24 5 84 0 7 637 0 4 28 0 1 504 0 4 16 4 6 291 0 3 118 1 0 38 3 7 346 1 2 212 41 0 196 chain 5741 chr12 133851895 + 105412044 105412133 Tigger3c 601 + 461 555 187728 59 1 3 14 2 5 13 chain 15502 chr12 133851895 + 105444536 105444733 THE1B 368 - 172 368 139890 27 1 0 169 chain 3300 chr12 133851895 + 105447908 105448003 MIR 256 - 154 248 218969 36 11 11 10 24 23 14 chain 12745 chr12 133851895 + 105465422 105465565 AluYk4 311 - 0 143 149276 143 chain 48310 chr12 133851895 + 105484059 105484681 LTR9B 643 + 0 637 60236 93 0 15 99 4 3 123 12 10 128 2 0 32 0 4 113 0 1 16 chain 4651 chr12 133851895 + 105488888 105488944 L1MA3 4352 - 70 124 199050 24 2 0 30 chain 62901 chr12 133851895 + 105489029 105489929 MER11A 1151 - 174 1151 51488 84 1 60 18 0 1 67 0 4 37 41 36 49 5 17 187 1 0 112 0 11 63 0 4 120 36 28 79 chain 42273 chr12 133851895 + 105491314 105491972 L1PB3 3668 - 110 752 66304 29 3 1 19 0 1 4 2 1 18 23 7 85 27 29 74 1 0 181 1 4 19 1 4 56 6 5 18 2 0 12 5 3 72 chain 8403 chr12 133851895 + 105518994 105519171 Tigger2b_Pri 1066 + 36 208 168839 20 1 0 29 44 41 23 7 6 53 chain 28717 chr12 133851895 + 105524860 105525163 AluYb8 318 - 15 318 90266 303 chain 24757 chr12 133851895 + 105541406 105541696 AluSp 311 + 5 295 106125 290 chain 17722 chr12 133851895 + 105544465 105544821 THE1C 375 - 0 375 133641 133 58 76 12 20 0 10 15 35 14 7 8 87 chain 520068 chr12 133851895 + 105572766 105579469 L1PA7 6471 - 2 6456 5151 74 5 4 380 0 1 20 0 1 7 0 1 50 1 0 72 1 4 154 14 20 61 1 4 329 4 1 383 0 10 215 0 4 190 5 6 159 0 2 481 1 0 212 1 0 126 0 1 95 300 0 80 0 10 92 5 1 320 6 10 197 0 10 41 13 0 1421 0 8 419 1 0 178 1 0 163 24 25 164 19 30 57 22 16 6 0 6 133 chain 9813 chr12 133851895 + 105579930 105580103 Tigger4a 237 - 0 200 161533 14 14 36 7 8 0 40 2 1 8 0 14 80 chain 3802 chr12 133851895 + 105614017 105614072 MER58A 224 - 9 209 210374 45 0 145 10 chain 77133 chr12 133851895 + 105637881 105638840 L1PA8 5853 - 0 950 44897 92 2 1 19 2 1 40 14 13 5 1 0 74 2 0 8 1 0 36 1 0 555 6 5 101 chain 4571 chr12 133851895 + 105639474 105639541 L1MB7 1623 + 1365 1429 199980 5 1 0 53 2 0 6 chain 545807 chr12 133851895 + 105639631 105645746 L1PA4 6152 + 54 6152 1974 526 1 0 256 17 0 135 0 1 1349 0 1 1449 0 1 404 0 1 1131 0 1 188 0 1 52 5 0 602 chain 20884 chr12 133851895 + 105650250 105650595 THE1D 372 - 15 372 124341 107 79 81 87 0 10 72 chain 84006 chr12 133851895 + 105668643 105669567 L1PA3long 6157 + 5218 6142 41901 924 chain 21891 chr12 133851895 + 105692218 105692898 THE1B 368 + 0 367 120659 168 2 1 29 10 11 4 0 1 14 7 15 56 351 29 39 chain 81539 chr12 133851895 + 105693005 105694080 MER11B 1079 + 0 1079 42961 170 22 4 137 17 37 189 0 1 4 6 5 16 10 9 198 2 4 105 0 1 36 1 2 133 1 0 28 chain 11742 chr12 133851895 + 105695297 105695601 HERVK11-int 2540 + 679 929 153294 58 5 0 14 14 8 4 1 0 9 2 0 21 77 41 44 3 0 12 6 5 34 chain 42134 chr12 133851895 + 105696611 105697122 MER9a1 513 - 0 513 66468 370 0 1 27 8 9 106 chain 309863 chr12 133851895 + 105697122 105701741 HERVK9-int 4720 - 0 4684 13007 103 0 4 168 0 1 72 3 16 454 1 49 577 898 0 5 0 899 193 4 5 11 0 3 115 0 1 1884 1 0 28 1 0 5 4 3 66 1 0 4 8 5 13 chain 41694 chr12 133851895 + 105702516 105703018 MER9a1 513 - 0 513 67038 68 2 0 330 11 15 82 0 9 9 chain 85639 chr12 133851895 + 105704928 105706160 HERVK11-int 2540 + 1062 2235 41294 59 19 18 38 1 0 12 11 8 12 14 4 13 1 0 27 12 1 31 25 5 429 17 12 104 1 0 183 13 12 72 12 7 126 chain 88222 chr12 133851895 + 105707148 105708223 MER11B 1079 + 0 1079 40291 770 2 4 13 1 3 86 0 1 173 1 0 29 chain 3452 chr12 133851895 + 105712937 105712976 LTR24B 570 + 531 570 216183 39 chain 4242 chr12 133851895 + 105719845 105719916 MER65A 464 - 371 460 203986 33 8 26 30 chain 19752 chr12 133851895 + 105763233 105763482 L1PA8 5853 - 0 245 127953 93 1 0 18 1 0 55 1 0 5 1 0 74 chain 28987 chr12 133851895 + 105773524 105773834 AluYf4 310 + 0 310 89052 310 chain 11992 chr12 133851895 + 105785829 105786197 MLT1C 463 + 57 439 152232 50 0 1 17 6 0 21 29 33 12 153 168 80 chain 28221 chr12 133851895 + 105792124 105792513 THE1C 375 + 0 375 92227 26 0 1 98 3 0 55 0 1 12 11 5 152 7 0 25 chain 36965 chr12 133851895 + 105797753 105798199 L1PA7 6471 - 5 444 73562 31 9 0 89 0 1 35 1 2 281 chain 2629 chr12 133851895 + 105806532 105806567 MER20B 722 - 34 68 231294 21 1 0 13 chain 15246 chr12 133851895 + 105832969 105833199 L1PA8 5853 - 18 245 140645 61 14 14 19 2 1 52 1 0 5 5 4 71 chain 58425 chr12 133851895 + 105833205 105834016 THE1D-int 1627 - 721 1627 53732 102 26 37 47 1 0 148 0 1 93 5 86 336 18 19 20 0 2 15 chain 3453 chr12 133851895 + 105838326 105838364 MER110A 451 + 404 442 216161 38 chain 3437 chr12 133851895 + 105839067 105839270 LTR37A 408 + 71 285 216454 29 147 158 27 chain 23801 chr12 133851895 + 105840506 105840772 L1PA3long 6157 + 5891 6157 111475 266 chain 19930 chr12 133851895 + 105847671 105848026 THE1B 368 + 7 368 127361 102 2 5 6 2 0 49 69 75 62 8 7 55 chain 75313 chr12 133851895 + 105872336 105873305 LTR5_Hs 974 - 0 974 45868 103 47 52 163 1 0 84 1 0 104 0 1 171 0 1 5 0 1 122 1 0 167 chain 56424 chr12 133851895 + 105894418 105895094 LTR12_ 688 - 0 688 54895 175 1 0 136 0 12 150 1 2 213 chain 539094 chr12 133851895 + 105907644 105913787 L1PA4 6152 - 0 6149 2969 171 0 4 79 1 0 85 0 1 910 0 1 539 0 11 579 0 1 467 0 1 474 15 0 251 1 4 2571 chain 21413 chr12 133851895 + 105934513 105934868 THE1D 372 + 0 359 122466 53 23 15 53 7 11 52 0 2 5 4 0 10 18 20 18 0 6 11 0 2 101 chain 24272 chr12 133851895 + 105937520 105937880 THE1B 368 - 0 368 108840 118 43 52 30 1 0 168 chain 18238 chr12 133851895 + 105962513 105962813 MER66C 541 - 176 527 132241 65 4 28 35 1 34 27 0 12 65 33 15 70 chain 23509 chr12 133851895 + 105986891 105987247 THE1D 372 - 0 372 113081 123 58 71 6 0 4 59 1 0 109 chain 467546 chr12 133851895 + 105997194 106003175 HERVL-int 5654 - 0 5653 8128 220 1 0 4 0 1 200 8 4 17 0 8 297 19 19 72 1 2 618 350 0 307 0 1 124 0 1 220 0 1 763 0 1 682 3 12 62 15 14 30 0 4 27 1 0 4 1 2 343 1 0 1011 0 1 466 0 1 114 chain 21132 chr12 133851895 + 105998704 105998989 HERVL-int 5654 - 1516 1782 123441 38 20 0 216 0 1 11 chain 28028 chr12 133851895 + 106003538 106003920 MLT2A1 477 - 92 473 92903 61 1 0 140 6 7 6 3 0 18 5 6 8 0 1 134 chain 558480 chr12 133851895 + 106022039 106028066 L1PA2 6032 + 0 6032 455 2986 4 0 1171 0 9 1866 chain 16605 chr12 133851895 + 106050388 106050584 AluY 311 + 88 285 136651 44 0 1 152 chain 21439 chr12 133851895 + 106051201 106051550 THE1C 375 + 0 336 122376 14 2 0 71 0 1 21 7 8 71 0 1 41 13 9 50 23 13 36 chain 3461 chr12 133851895 + 106055626 106055665 MADE1 96 + 57 96 215984 39 chain 61036 chr12 133851895 + 106057813 106058473 L1PA3long 6157 - 15 675 52314 660 chain 19812 chr12 133851895 + 106058485 106058708 L1PA3long 6157 + 5259 5483 127778 164 0 1 59 chain 446155 chr12 133851895 + 106073161 106078738 HERVL-int 5654 + 0 5654 8870 185 0 1 13 0 14 211 8 9 37 13 1 279 0 5 6 35 13 40 7 22 328 9 0 439 11 8 68 0 3 96 1 0 53 0 4 678 0 12 165 1 0 4 0 1 310 0 23 50 0 3 457 0 1 293 3 0 52 0 1 43 16 19 237 1 0 4 0 1 34 0 1 870 0 40 520 chain 32613 chr12 133851895 + 106078738 106079165 MLT2A1 477 + 0 476 79832 139 1 2 27 2 6 67 1 2 82 1 0 60 0 44 47 chain 241111 chr12 133851895 + 106087826 106091247 L1PB1 5432 - 12 3261 16714 16 1 0 13 1 0 21 1 0 24 2 0 13 13 10 15 10 1 11 4 1 15 16 15 23 6 5 16 2 1 48 5 3 10 7 3 9 1 0 13 4 3 17 145 11 207 11 12 260 1 2 23 7 8 286 5 4 130 0 4 59 19 1 150 7 8 214 3 1 163 0 1 510 2 1 217 2 1 49 0 1 41 0 1 167 0 5 28 0 3 16 4 5 22 6 3 170 1 0 159 chain 9506 chr12 133851895 + 106169599 106169700 L1PA4 6152 + 6050 6151 163038 101 chain 544717 chr12 133851895 + 106169844 106175863 L1PA3long 6157 + 0 6147 2107 152 0 12 88 4 0 10 9 0 102 0 1 403 8 136 1071 0 1 721 1 0 3450 chain 6461 chr12 133851895 + 106196358 106196439 Tigger3b 1229 + 23 104 181555 81 chain 62572 chr12 133851895 + 106196442 106197234 LTR17 781 - 0 781 51639 12 0 1 29 6 7 331 15 4 69 2 1 182 2 1 144 chain 149288 chr12 133851895 + 106219527 106221209 L1PA4 6152 + 4463 6146 24719 519 0 1 1163 chain 28552 chr12 133851895 + 106221375 106221703 L1PA6 6164 + 5835 6161 90946 319 2 0 7 chain 6954 chr12 133851895 + 106222476 106222622 L1PB4 2604 - 52 197 177781 50 40 41 34 1 0 14 1 0 6 chain 13506 chr12 133851895 + 106253159 106253541 THE1B 368 + 25 368 146346 82 9 11 12 0 5 42 136 75 30 32 47 39 chain 45450 chr12 133851895 + 106267099 106267583 SVA_F 1814 + 1326 1812 62546 104 0 2 380 chain 95430 chr12 133851895 + 106267626 106269243 L1MA3 4352 + 2407 4348 37977 182 1 0 48 27 339 68 2 3 68 35 36 241 0 26 436 2 8 19 18 0 68 5 8 22 24 36 25 19 18 34 74 42 45 1 0 23 14 16 30 15 13 19 14 34 7 2 0 9 2 0 18 chain 24943 chr12 133851895 + 106271271 106271568 L1PA7 6471 - 2 302 105087 11 0 2 147 3 4 136 chain 27939 chr12 133851895 + 106289150 106289510 THE1B 368 - 0 362 93206 200 1 0 126 0 5 23 2 0 8 chain 37807 chr12 133851895 + 106291928 106292403 LTR10F 562 - 0 562 72404 297 0 24 9 0 14 23 0 21 27 1 29 118 chain 19955 chr12 133851895 + 106295588 106295946 THE1C 375 + 10 365 127285 77 3 4 88 83 80 91 1 0 15 chain 12270 chr12 133851895 + 106326613 106326799 L1PA8 5853 - 0 183 151110 93 1 0 12 0 1 6 2 1 52 8 6 12 chain 3746 chr12 133851895 + 106379355 106379405 MER58A 224 - 147 215 211242 35 0 18 15 chain 14945 chr12 133851895 + 106390915 106391194 L1PB1 5432 + 5158 5413 141484 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 8 5 11 6 4 23 1 0 21 1 0 13 1 0 9 chain 3343 chr12 133851895 + 106405259 106405297 L1MB2 1706 + 1156 1194 218165 38 chain 23915 chr12 133851895 + 106405297 106405717 MSTA 426 + 0 426 110839 26 0 1 104 11 31 8 24 0 44 0 2 11 32 31 39 14 22 107 chain 32483 chr12 133851895 + 106428487 106429023 L1PB1 5432 - 9 508 80059 19 1 0 13 1 0 21 1 0 24 0 1 4 3 0 9 8 5 16 8 0 11 2 0 4 1 0 16 1 0 44 1 0 15 2 1 7 3 0 45 2 0 9 6 2 11 1 0 9 1 0 23 20 16 174 chain 23076 chr12 133851895 + 106434854 106435176 THE1D 372 - 42 370 115273 136 26 32 160 chain 25890 chr12 133851895 + 106497434 106497796 THE1C 375 + 0 364 100482 225 5 6 98 16 17 18 chain 35665 chr12 133851895 + 106535659 106536122 LTR7 482 - 0 482 75313 49 12 14 103 4 0 41 0 31 41 10 0 203 chain 11618 chr12 133851895 + 106550773 106550988 MER30 238 - 0 220 153817 26 47 42 48 4 14 90 chain 472107 chr12 133851895 + 106557382 106563383 L1PA8 5853 + 108 5853 7967 143 7 1 53 0 4 32 15 10 237 0 1 347 254 0 479 2 0 112 1 2 484 6 5 136 0 4 404 6 5 59 0 3 48 0 1 34 0 1 222 0 4 1113 1 0 163 6 5 787 0 2 553 1 0 48 2 0 72 1 0 54 35 33 84 chain 3146 chr12 133851895 + 106575666 106575763 MIRb 242 + 31 133 222036 21 47 52 29 chain 1919 chr12 133851895 + 106596401 106596545 THE1D 372 + 0 144 122609 144 chain 109811 chr12 133851895 + 106596577 106597800 L1PA4 6152 + 4933 6151 34255 1212 5 0 6 chain 2612 chr12 133851895 + 106597809 106598005 THE1D 372 + 167 371 122609 13 37 45 146 chain 478887 chr12 133851895 + 106600591 106606634 L1PA7 6471 - 4 6466 7770 18 1 0 128 0 1 6 0 2 105 0 8 193 0 2 160 1 0 33 1 3 184 0 4 23 0 3 250 6 13 368 0 5 352 0 1 359 0 1 416 1 0 121 0 1 120 0 2 38 1 6 38 2 0 135 0 286 255 0 2 117 0 4 72 0 1 86 0 7 482 0 1 314 6 10 459 1 20 349 25 90 30 0 1 4 6 5 26 21 26 134 16 13 100 2 1 60 1 0 10 1 0 84 1 0 12 6 7 42 31 23 230 chain 15061 chr12 133851895 + 106610539 106610723 L1PA7 6471 - 3 185 141134 8 2 0 174 chain 3332 chr12 133851895 + 106627315 106627442 LTR12C 1709 + 1010 1059 218367 39 78 0 10 chain 28432 chr12 133851895 + 106635106 106635410 AluYa5 310 - 7 310 91457 185 1 0 118 chain 28430 chr12 133851895 + 106654565 106654866 AluYb8 318 + 0 301 91462 301 chain 106574 chr12 133851895 + 106657862 106659394 L1MA2 4263 + 2581 4105 35097 63 6 4 57 11 21 41 7 4 140 0 1 569 1 2 83 1 0 7 0 1 10 7 3 75 1 0 140 11 8 19 0 1 128 1 0 6 2 1 38 7 8 47 15 8 39 chain 29100 chr12 133851895 + 106712670 106712988 AluYb8 318 - 0 318 88554 318 chain 4022 chr12 133851895 + 106723386 106723437 MER5B 177 - 125 177 207049 30 0 1 21 chain 7377 chr12 133851895 + 106725921 106726012 MER63D 473 + 52 147 174921 18 0 4 73 chain 56553 chr12 133851895 + 106732247 106733480 L1PA15 4387 - 34 939 54822 24 19 13 46 17 14 39 17 12 11 10 9 55 1 0 26 1 0 113 318 0 59 1 0 40 3 1 73 6 5 78 0 4 153 0 3 6 3 0 10 12 18 88 0 1 4 chain 16428 chr12 133851895 + 106750185 106750368 AluYb8 318 + 135 318 137127 183 chain 75755 chr12 133851895 + 106764895 106765727 L1PA3long 6157 + 5325 6157 45617 832 chain 3475 chr12 133851895 + 106775092 106775129 Tigger1 2417 - 421 458 215742 37 chain 32517 chr12 133851895 + 106775526 106775990 MER41A 554 - 86 529 79994 20 0 1 121 31 0 5 0 3 55 16 22 216 chain 543627 chr12 133851895 + 106791643 106797749 L1PA4 6152 + 6 6151 2251 60 2 1 61 0 14 438 1 0 653 0 2 126 0 4 646 7 0 103 0 1 478 0 9 658 0 2 274 0 12 392 0 1 417 0 2 379 0 2 1287 1 0 123 chain 7241 chr12 133851895 + 106806436 106806634 MER82 654 - 27 230 175823 37 64 63 15 22 28 60 chain 22886 chr12 133851895 + 106837609 106837887 AluSc 308 - 17 297 116158 160 0 2 118 chain 481880 chr12 133851895 + 106859247 106865341 L1PA7 6471 - 3 6433 7659 13 0 1 73 0 1 70 3 4 345 0 10 205 0 1 114 1 0 10 2 1 217 0 2 1415 1 2 296 1 2 113 1 2 74 13 13 44 0 8 189 4 0 6 0 4 60 0 1 127 0 1 403 7 0 1306 3 1 267 0 21 176 25 117 17 2 12 153 46 242 118 50 49 124 chain 556378 chr12 133851895 + 106865643 106871669 L1PA2 6032 - 4 6031 687 4929 1 0 531 0 4 511 2 0 52 chain 13320 chr12 133851895 + 106890812 106891030 MER30 238 + 25 238 147008 61 2 0 20 19 19 74 11 8 31 chain 22863 chr12 133851895 + 106910205 106910495 AluSg 306 + 5 295 116265 136 1 4 5 3 0 145 chain 406256 chr12 133851895 + 106923192 106929026 L1PB1 5432 - 19 5413 9901 9 1 0 13 1 0 17 0 17 11 2 0 14 8 5 18 19 9 5 1 0 15 4 3 40 1 0 16 2 1 53 2 0 7 18 13 13 112 31 288 12 11 96 337 1 77 15 13 264 5 11 136 0 2 471 2 0 159 8 11 575 0 5 149 6 4 92 2 1 24 1 0 219 7 0 27 1 2 81 23 24 745 0 1 73 0 4 119 25 7 9 16 0 7 1 0 69 0 13 172 0 1 494 4 8 94 1 0 142 21 20 363 chain 513757 chr12 133851895 + 106939700 106945826 L1PA6 6164 - 2 6164 5806 144 14 14 615 6 10 64 1 0 198 0 3 19 0 1 126 0 1 173 1 0 1174 1 0 112 0 8 118 0 1 817 5 6 232 0 1 889 0 5 212 2 1 365 0 2 42 1 18 281 2 1 6 4 0 306 0 1 196 chain 126396 chr12 133851895 + 106952126 106953558 L1PA4 6152 - 0 1431 28976 113 0 1 552 2 1 184 1 0 580 chain 27344 chr12 133851895 + 106989885 106990250 THE1B 368 + 0 368 95130 15 2 0 25 0 5 127 2 1 25 0 2 96 1 0 72 chain 21420 chr12 133851895 + 107005628 107005980 L1MB3 1562 - 1193 1553 122443 32 1 0 12 0 1 97 10 22 39 10 13 7 1 0 83 16 11 32 1 0 11 chain 78110 chr12 133851895 + 107014030 107015092 MER11A 1151 - 5 1151 44457 35 0 4 123 0 1 16 1 0 46 0 1 58 44 27 150 0 1 136 7 5 4 0 1 32 1 2 60 8 9 139 8 4 62 1 0 76 0 99 55 chain 22731 chr12 133851895 + 107119742 107120046 AluSg 306 + 0 302 116915 57 5 1 83 13 14 124 0 1 22 chain 129092 chr12 133851895 + 107144721 107146118 L1PA3long 6157 - 5 1402 28293 1397 chain 3566 chr12 133851895 + 107159970 107160011 MER5B 177 + 107 148 214197 41 chain 124068 chr12 133851895 + 107181639 107183202 THE1A-int 1579 - 8 1578 29678 494 0 1 388 0 1 73 11 12 55 12 13 285 4 5 7 1 0 121 0 3 112 chain 17831 chr12 133851895 + 107200339 107200577 AluSg 306 + 12 251 133300 210 14 15 14 chain 25482 chr12 133851895 + 107215582 107215879 AluY 311 + 8 306 102305 124 0 1 173 chain 13066 chr12 133851895 + 107242717 107243042 L1MA3 4352 + 4057 4352 147969 30 66 32 41 1 5 30 4 3 44 1 10 6 2 0 24 11 9 23 1 0 19 5 2 17 chain 4319 chr12 133851895 + 107243347 107243401 MER5A1 166 + 94 148 202982 54 chain 5374 chr12 133851895 + 107244596 107244661 Tigger4a 237 + 33 98 191267 65 chain 16664 chr12 133851895 + 107314598 107314791 MER107 203 - 1 194 136497 193 chain 41359 chr12 133851895 + 107332869 107333795 MER4B 649 - 18 649 67460 62 6 5 111 7 8 26 18 0 45 1 10 52 0 1 69 315 0 50 2 0 31 19 49 112 chain 17718 chr12 133851895 + 107343116 107343334 THE1C 375 - 150 368 133652 40 1 2 11 1 0 165 chain 17270 chr12 133851895 + 107360074 107360446 L1PA15 4387 - 37 407 134866 21 5 0 14 3 1 44 17 14 35 24 28 8 1 0 16 13 14 25 6 10 5 1 0 11 1 0 70 9 11 43 chain 22225 chr12 133851895 + 107378313 107378675 THE1B 368 + 0 368 119236 108 8 9 60 61 66 125 chain 23395 chr12 133851895 + 107389626 107389909 AluSp 311 - 17 297 113672 187 1 0 19 2 0 74 chain 27688 chr12 133851895 + 107396449 107396815 THE1B 368 + 0 368 94085 64 4 6 98 1 0 8 1 0 123 0 2 67 chain 16050 chr12 133851895 + 107404524 107404823 Tigger1 2417 + 218 518 138215 40 69 74 16 10 0 39 0 2 103 0 4 22 chain 6966 chr12 133851895 + 107407454 107407722 MER33 330 + 17 282 177704 11 1 0 22 0 1 13 157 154 64 chain 4338 chr12 133851895 + 107408539 107408592 MER2 342 - 26 79 202734 53 chain 19315 chr12 133851895 + 107439509 107439736 L1PA5 6144 + 5907 6132 129197 11 1 0 79 1 0 135 chain 24831 chr12 133851895 + 107441190 107441540 THE1C 375 + 0 347 105721 15 2 0 158 6 9 18 3 0 62 1 0 85 chain 308094 chr12 133851895 + 107475813 107479602 L1PA8 5853 + 2028 5850 13081 110 14 12 124 0 4 120 0 1 31 0 1 36 1 2 419 1 0 70 1 4 45 0 1 335 2 0 36 0 2 112 0 1 395 0 4 161 15 23 293 1 0 193 0 10 436 0 3 47 0 3 22 2 3 79 11 12 386 2 1 42 3 1 9 0 3 62 1 0 4 11 10 44 2 1 19 2 1 16 1 0 73 chain 29756 chr12 133851895 + 107489426 107489802 THE1C 375 + 0 375 85628 349 1 0 26 chain 108492 chr12 133851895 + 107489819 107491359 THE1C-int 1605 + 23 1589 34565 69 4 61 12 3 0 122 5 8 42 0 29 79 86 11 296 0 9 39 0 2 42 8 14 158 0 1 192 7 8 182 11 7 183 chain 34703 chr12 133851895 + 107501300 107501742 MER4A1 472 + 8 472 76619 4 1 0 31 1 0 184 0 21 122 0 3 99 chain 47583 chr12 133851895 + 107503664 107504297 MER41B 635 + 0 635 60779 95 1 0 31 0 1 158 0 2 136 0 1 27 19 18 166 chain 31926 chr12 133851895 + 107517408 107517830 MLT2A1 477 + 4 477 80973 50 1 14 62 0 1 37 5 2 4 0 1 207 1 40 55 chain 4114 chr12 133851895 + 107517930 107517980 L1MA7 2200 + 2001 2051 205718 50 chain 5798 chr12 133851895 + 107530522 107530589 THE1D 372 + 305 372 187164 67 chain 5053 chr12 133851895 + 107530589 107530648 MLT2B4 540 - 481 540 194607 59 chain 25486 chr12 133851895 + 107543554 107543843 L1PA5 6144 - 16 305 102287 289 chain 14285 chr12 133851895 + 107545754 107545970 LTR39 781 - 558 781 143606 32 1 0 26 0 5 117 7 8 11 4 6 18 chain 28404 chr12 133851895 + 107548522 107548820 AluYd8 298 - 0 298 91563 298 chain 22848 chr12 133851895 + 107551348 107551698 THE1D 372 + 4 372 116354 57 4 14 91 24 27 45 11 17 80 1 0 37 chain 43509 chr12 133851895 + 107574599 107575090 L1PA4 6152 - 6 502 64802 107 0 1 34 0 1 248 0 3 102 chain 24702 chr12 133851895 + 107579202 107579534 MER65C 458 + 124 458 106426 107 1 0 24 9 13 46 1 0 144 chain 9138 chr12 133851895 + 107579577 107579709 MLT1B 390 + 238 369 164869 13 7 6 112 chain 447444 chr12 133851895 + 107579969 107584971 L1PA4 6152 + 1112 6143 8831 131 0 1 1131 1 0 4 0 1 111 0 9 786 0 1 137 1 0 121 0 1 1731 0 1 26 0 4 110 0 1 145 0 12 567 chain 8089 chr12 133851895 + 107593391 107593522 L1MA2 4263 - 150 272 170546 7 1 0 38 1 0 4 13 6 67 chain 53858 chr12 133851895 + 107603480 107604180 LTR12 884 + 0 884 56451 25 1 0 53 0 41 153 0 41 21 32 10 24 0 22 205 0 103 186 chain 219280 chr12 133851895 + 107604208 107608716 HERV9-int 5642 + 0 2841 17928 599 6 5 191 1 0 109 0 85 38 80 0 80 8 4 133 0 1 58 70 70 556 6 7 86 9 0 159 1641 0 166 20 1 210 0 1 282 chain 140060 chr12 133851895 + 107606408 107608036 L1PA5 6144 + 4527 6143 26134 107 0 2 460 15 0 905 0 1 141 chain 61013 chr12 133851895 + 107611064 107611834 LTR12 884 + 0 876 52324 24 1 0 31 0 107 210 0 22 244 35 13 225 chain 23425 chr12 133851895 + 107654052 107654305 L1PA4 6152 - 1 254 113499 253 chain 33585 chr12 133851895 + 107675858 107676370 THE1D-int 1627 - 1064 1604 78267 87 1 82 232 10 11 44 54 0 84 chain 44980 chr12 133851895 + 107686806 107687349 MLT2A2 560 + 0 558 63082 367 1 5 27 5 16 143 chain 29658 chr12 133851895 + 107693852 107694197 L1PA5 6144 - 4 346 86034 11 3 0 331 chain 2947 chr12 133851895 + 107697992 107698023 MLT1I 406 - 16 47 226167 31 chain 29460 chr12 133851895 + 107776351 107776688 L1PA7 6471 + 6124 6461 86794 337 chain 41702 chr12 133851895 + 107793461 107794016 L1PA8 5853 - 0 549 67023 18 1 2 72 2 1 19 2 1 45 5 4 12 2 1 70 2 0 44 1 0 260 chain 2661 chr12 133851895 + 107799885 107799997 MIR 256 + 117 223 230891 17 70 64 25 chain 27911 chr12 133851895 + 107811788 107812234 MLT2A2 560 + 0 560 93317 88 0 3 76 13 11 15 41 40 69 2 111 42 1 6 99 chain 29675 chr12 133851895 + 107826780 107827101 AluYb8 318 + 0 316 85916 126 5 0 190 chain 8194 chr12 133851895 + 107879820 107879935 MSTB2 466 + 0 131 169986 15 4 20 96 chain 3879 chr12 133851895 + 107890978 107891094 HAL1-2a_MD 234 + 3 98 209184 12 21 0 30 24 0 10 5 29 14 chain 2489 chr12 133851895 + 107891179 107891236 HAL1-2a_MD 234 + 0 39 233234 17 19 1 21 chain 7984 chr12 133851895 + 107893284 107893396 THE1D 372 - 12 125 171144 44 10 11 58 chain 21614 chr12 133851895 + 107907059 107907435 THE1D 372 + 0 372 121714 29 9 12 14 9 0 17 6 7 82 49 50 161 chain 64943 chr12 133851895 + 107910739 107911461 L1PA5 6144 - 1091 1816 50595 95 0 3 627 chain 93549 chr12 133851895 + 107911479 107912539 L1PA5 6144 + 5071 6144 38494 294 0 4 415 0 8 279 1 2 71 chain 4091 chr12 133851895 + 107935756 107935803 MLT2D 439 - 391 438 206060 47 chain 13202 chr12 133851895 + 108018675 108019073 L1MD1 2063 - 169 529 147455 26 74 47 45 9 5 22 116 109 106 chain 3745 chr12 133851895 + 108031514 108031557 MER102c 337 - 64 107 211256 43 chain 6512 chr12 133851895 + 108044587 108044667 HY3 101 + 20 100 181141 80 chain 12162 chr12 133851895 + 108058757 108058946 L1PA8 5853 + 5596 5780 151566 12 2 0 71 1 0 14 1 0 4 1 2 40 3 2 19 2 1 19 chain 16100 chr12 133851895 + 108058947 108059132 L1PA5 6144 + 5947 6132 138060 185 chain 16538 chr12 133851895 + 108070791 108071149 THE1B 368 - 15 368 136817 41 11 10 59 65 69 57 48 40 77 chain 4625 chr12 133851895 + 108094824 108094893 L1MB3 1562 - 711 778 199347 23 4 3 33 1 0 8 chain 222510 chr12 133851895 + 108099153 108101709 L1PA5 6144 - 0 2533 17731 11 1 5 131 0 1 120 4 0 185 26 1 191 0 1 197 1 5 292 5 0 653 0 4 400 0 1 112 8 4 219 chain 39895 chr12 133851895 + 108104695 108105175 MER9a1 513 - 1 501 69462 227 0 1 69 6 0 85 0 2 81 0 23 12 chain 9756 chr12 133851895 + 108114541 108114672 L1PA8 5853 - 0 129 161818 93 1 0 19 2 1 16 chain 491825 chr12 133851895 + 108116428 108122029 L1PA5 6144 + 0 6132 7280 89 0 525 36 0 2 383 11 34 85 0 3 71 2 1 770 1 4 190 0 2 120 1 0 654 33 0 605 0 1 766 0 4 866 0 1 8 1 0 164 0 4 738 1 0 6 chain 14681 chr12 133851895 + 108158616 108158882 Tigger3a 397 - 64 343 142324 145 5 9 36 52 61 28 chain 3557 chr12 133851895 + 108186742 108186780 MER61-int 3695 - 3150 3188 214409 38 chain 81230 chr12 133851895 + 108192732 108193743 LTR13 1007 - 0 1007 43072 191 0 1 128 7 1 298 6 7 302 0 7 9 8 1 62 chain 42495 chr12 133851895 + 108211641 108212210 LTR10A 586 - 14 586 66021 289 18 19 15 10 11 26 9 10 202 chain 25242 chr12 133851895 + 108215678 108215973 LTR12 884 + 589 884 103518 295 chain 267905 chr12 133851895 + 108216001 108219316 HERV9-int 5642 + 0 4254 15299 79 5 6 79 0 4 545 0 4 78 1 0 278 80 0 34 3 0 243 1 0 137 0 1 304 1 0 63 0 1 52 0 1 194 11 12 189 0 1011 200 0 1 738 chain 5634 chr12 133851895 + 108219899 108219964 LTR5_Hs 974 + 3 68 188731 65 chain 13572 chr12 133851895 + 108219972 108220223 HERVK-int 6823 - 6574 6817 146088 110 29 26 13 1 0 19 7 6 13 1 0 13 8 7 20 1 0 16 chain 38366 chr12 133851895 + 108223525 108223986 L1PA5 6144 - 0 462 71623 104 1 2 356 chain 3885 chr12 133851895 + 108229672 108229717 L1M3 994 + 170 215 209094 45 chain 8569 chr12 133851895 + 108238835 108238926 L1HS 6032 - 1 92 167912 91 chain 31448 chr12 133851895 + 108242242 108242735 LTR19A 502 + 0 502 81734 36 0 1 150 0 37 42 4 0 19 20 0 126 1 0 19 45 41 31 chain 22810 chr12 133851895 + 108245216 108245547 L1PA8 5853 + 5530 5853 116530 34 1 0 43 5 3 69 1 0 9 2 0 52 5 4 16 1 0 93 chain 43504 chr12 133851895 + 108254415 108255389 L1P2 5180 + 1261 1884 64809 14 42 47 451 6 14 53 364 0 44 chain 359209 chr12 133851895 + 108255389 108260951 L1PA7 6471 + 2088 6465 11373 801 10 16 567 1 5 14 2 1 31 0 1 91 0 1 50 0 5 160 1 2 428 1 0 8 1 2 411 1205 0 110 9 1 403 2 1 417 0 3 134 3 0 12 0 5 243 0 6 303 0 1 76 0 1 26 12 14 20 3 0 7 chain 75181 chr12 133851895 + 108257970 108259171 LTR12D 1347 + 0 1347 45936 44 10 0 50 37 81 70 8 9 11 1 0 4 0 4 8 4 1 15 104 34 62 11 6 97 0 2 38 1 32 22 1 0 18 0 41 45 0 17 108 2 1 165 0 97 265 chain 4795 chr12 133851895 + 108265208 108265261 MSTC 436 - 340 393 197409 53 chain 29310 chr12 133851895 + 108298068 108298377 AluYa5 310 - 0 309 87514 309 chain 13985 chr12 133851895 + 108307899 108308067 LTR12_ 688 - 0 272 144630 39 0 1 115 0 103 14 chain 5918 chr12 133851895 + 108315176 108315246 L1PA8A 6298 - 2598 2668 185216 70 chain 208828 chr12 133851895 + 108315246 108318116 L1PA8A 6298 + 3714 6291 18576 145 5 10 31 0 1 498 18 19 64 0 2 238 0 1 96 2 0 670 8 7 83 301 0 260 1 0 4 5 6 158 0 1 283 chain 3357 chr12 133851895 + 108339491 108339527 L1MA4 2864 - 1596 1632 217914 36 chain 27888 chr12 133851895 + 108355039 108355379 L1PA8A 6298 - 7 344 93405 112 0 1 218 4 0 6 chain 114883 chr12 133851895 + 108363987 108365258 L1PA4 6152 - 16 1296 32824 1262 0 9 9 chain 6348 chr12 133851895 + 108369593 108369677 MER66A 478 - 398 478 182401 61 4 0 19 chain 86838 chr12 133851895 + 108390812 108391838 LTR5A 1029 - 0 1029 40842 873 1 14 14 14 0 116 0 4 8 chain 51673 chr12 133851895 + 108403585 108404241 PABL_A 660 + 0 660 57848 171 12 13 331 1 3 55 0 1 86 chain 17881 chr12 133851895 + 108468236 108468775 L1PB1 5432 + 4854 5376 133159 57 0 119 73 1 2 10 199 82 23 2 1 10 6 5 39 6 5 16 1 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 6 chain 2706 chr12 133851895 + 108472148 108472181 MIRb 242 + 34 66 230157 5 1 0 27 chain 38725 chr12 133851895 + 108484149 108484786 LTR9B 643 - 8 643 71118 30 2 1 86 1 0 6 18 23 18 45 49 216 6 5 64 24 11 31 1 2 52 0 4 37 chain 5482 chr12 133851895 + 108488191 108488283 MER58A 224 + 8 107 190206 12 15 22 65 chain 3381 chr12 133851895 + 108570452 108570493 L1ME1 1623 - 347 388 217447 41 chain 12206 chr12 133851895 + 108627812 108627992 MER30 238 - 0 188 151396 35 7 4 77 4 15 57 chain 3428 chr12 133851895 + 108634921 108634964 MIRc 230 - 120 163 216607 43 chain 74526 chr12 133851895 + 108670519 108671336 L1PA4 6152 - 1 820 46251 781 0 2 36 chain 3389 chr12 133851895 + 108693935 108693975 MLT1G 592 - 304 344 217300 40 chain 86108 chr12 133851895 + 108789206 108790194 L1PA5 6144 + 5153 6143 41116 140 2 1 560 0 3 286 chain 50748 chr12 133851895 + 108791290 108791855 L1PA5 6144 + 5567 6131 58465 409 1 0 155 chain 60466 chr12 133851895 + 108814339 108815044 SVA_B 1603 + 864 1602 52598 20 4 0 15 2 1 21 4 0 28 3 44 136 1 2 471 chain 26260 chr12 133851895 + 108826822 108827269 MLT2A2 560 - 0 560 98978 54 0 2 41 1 6 37 5 119 7 6 0 67 60 58 169 chain 41488 chr12 133851895 + 108833519 108834055 MER41A 554 + 14 554 67295 179 1 0 241 4 9 111 chain 10909 chr12 133851895 + 108834055 108834192 MER4D 903 + 192 329 156557 137 chain 34542 chr12 133851895 + 108836697 108837164 LTR10F 562 + 0 562 76843 122 1 29 21 24 0 10 0 83 200 0 7 58 0 1 31 chain 42576 chr12 133851895 + 108837431 108837957 MER41A 554 - 0 531 65933 405 0 4 52 0 1 69 chain 24913 chr12 133851895 + 108838349 108838733 LTR7B 505 - 0 505 105256 19 8 6 26 10 13 82 7 48 27 0 55 32 12 26 56 0 10 105 chain 44255 chr12 133851895 + 108848505 108849064 MER41A 554 + 2 554 63873 253 18 11 288 chain 6636 chr12 133851895 + 108879451 108879545 MLT1B 390 + 280 374 180198 15 2 1 13 0 1 64 chain 32542 chr12 133851895 + 108880649 108881016 L1PA5 6144 - 6 374 79957 165 0 1 202 chain 10160 chr12 133851895 + 108881072 108881217 L1P4 1494 + 1036 1183 159799 44 4 5 72 0 1 25 chain 9618 chr12 133851895 + 108896633 108896752 L1MB3 1562 + 1240 1358 162496 111 1 0 7 chain 2629 chr12 133851895 + 108900143 108900192 MLT1C 463 - 410 463 231286 21 9 13 19 chain 23269 chr12 133851895 + 108969581 108969877 AluSg7 307 - 10 307 114346 145 20 21 131 chain 3539 chr12 133851895 + 108988817 108988858 MIRb 242 - 103 144 214713 41 chain 6124 chr12 133851895 + 108996586 108996659 L1PA6 6164 + 5915 5992 184231 20 0 4 53 chain 140858 chr12 133851895 + 109049148 109050841 SVA_C 1631 + 20 1623 26017 76 0 6 618 40 0 132 44 0 6 0 1 5 2 0 46 1 0 45 2 1 46 1 0 613 8 0 8 chain 12486 chr12 133851895 + 109067530 109067664 L1PA3long 6157 + 6023 6157 150317 134 chain 6080 chr12 133851895 + 109104095 109104165 MER41A 554 + 398 468 184578 70 chain 21439 chr12 133851895 + 109119950 109120216 AluY 311 + 39 296 122372 84 1 0 131 8 0 42 chain 22374 chr12 133851895 + 109135537 109135808 AluSc 308 - 13 287 118608 19 0 3 252 chain 7256 chr12 133851895 + 109138031 109138304 L1MDa 1598 + 1258 1532 175727 69 52 107 11 50 0 23 0 2 5 46 40 17 chain 3566 chr12 133851895 + 109140064 109140105 MIRb 242 - 106 147 214191 41 chain 25289 chr12 133851895 + 109154043 109154341 AluSp 311 - 2 300 103273 298 chain 5105 chr12 133851895 + 109160117 109160194 MER3 215 + 14 98 194031 58 3 0 5 0 10 11 chain 15778 chr12 133851895 + 109257537 109257729 L1PA7 6471 - 3 190 139024 7 5 0 180 chain 41604 chr12 133851895 + 109265028 109266024 LTR8 732 + 0 725 67148 162 34 25 59 11 6 57 0 1 123 4 5 30 31 32 28 1 0 39 340 81 77 chain 27800 chr12 133851895 + 109289652 109290508 LTR59 565 - 0 565 93693 8 0 1 156 4 11 9 18 0 61 1 0 5 336 80 27 20 0 51 67 62 10 0 1 83 chain 4168 chr12 133851895 + 109295042 109295089 MSTC 436 - 0 47 204991 47 chain 5464 chr12 133851895 + 109298350 109298469 MER1B 344 + 204 339 190369 9 1 0 14 41 58 54 chain 10845 chr12 133851895 + 109315919 109316319 LTR40a 516 + 95 516 156806 65 212 233 4 1 0 56 22 23 40 chain 6324 chr12 133851895 + 109323419 109323494 MER31B 477 + 271 345 182608 39 1 0 35 chain 9736 chr12 133851895 + 109324547 109324678 MER57B2 428 - 305 428 161907 48 9 0 17 0 1 57 chain 41544 chr12 133851895 + 109328274 109328803 MER41A 554 + 0 530 67230 50 0 1 5 1 0 37 1 2 35 0 1 59 5 4 336 chain 5549 chr12 133851895 + 109351869 109351937 MER66C 541 - 99 167 189578 68 chain 5077 chr12 133851895 + 109353698 109353759 MIR 256 + 88 149 194323 61 chain 5316 chr12 133851895 + 109361412 109361585 MER20 218 - 3 175 191862 19 86 87 19 2 0 47 chain 6668 chr12 133851895 + 109428047 109428121 L1PA5 6144 - 293 367 179919 74 chain 26025 chr12 133851895 + 109428186 109428474 L1PA5 6144 + 5856 6144 99920 288 chain 558001 chr12 133851895 + 109434752 109440778 L1PA2 6032 + 0 6032 498 3143 0 2 1081 0 4 949 0 2 846 2 0 5 chain 3549 chr12 133851895 + 109455249 109455289 MER3 215 - 3 43 214545 40 chain 24458 chr12 133851895 + 109461433 109461721 AluSg7 307 - 4 291 107767 171 1 0 116 chain 21793 chr12 133851895 + 109468434 109468709 AluSg7 307 - 21 298 121046 28 0 1 118 7 8 122 chain 17442 chr12 133851895 + 109498327 109499007 MER75B 242 - 0 242 134396 28 2 0 86 1 6 13 441 0 109 chain 6160 chr12 133851895 + 109502830 109502898 MER41A 554 - 88 156 183901 68 chain 6290 chr12 133851895 + 109503695 109503769 MER58B 340 + 220 294 182885 74 chain 17139 chr12 133851895 + 109616421 109616693 MER83B 357 - 33 305 135209 167 2 0 5 3 21 42 6 7 21 17 0 9 chain 36983 chr12 133851895 + 109618542 109620124 L1MA3 4352 - 64 940 73529 6 1 0 24 1 0 8 19 14 12 15 7 22 1 0 52 2 0 26 0 1 4 6 0 6 41 19 167 5 7 63 930 267 171 chain 4866 chr12 133851895 + 109656879 109657046 MER58A 224 - 15 178 196629 15 2 0 24 89 87 37 chain 7105 chr12 133851895 + 109663644 109663790 MER33 330 + 125 285 176720 20 0 3 8 1 0 33 9 10 29 1 14 6 1 0 7 4 3 27 chain 24073 chr12 133851895 + 109672417 109672715 L1PA8A 6298 + 5992 6290 109916 193 0 1 5 2 1 98 chain 4491 chr12 133851895 + 109674242 109674357 MER58A 224 + 41 155 200895 42 48 47 25 chain 7288 chr12 133851895 + 109681712 109681793 L1PA5 6144 - 8 89 175520 81 chain 19705 chr12 133851895 + 109682723 109682993 AluSp 311 + 1 297 128075 148 10 24 25 0 1 69 0 14 10 3 0 5 chain 17765 chr12 133851895 + 109710183 109710568 L1MB3 1562 - 79 433 133529 13 2 0 5 0 1 26 1 0 5 34 8 4 1 0 70 1 0 10 1 0 53 0 1 51 72 71 36 chain 3002 chr12 133851895 + 109714096 109714131 MIRb 242 + 98 133 224988 35 chain 22565 chr12 133851895 + 109760647 109760924 AluSc 308 + 16 294 117736 241 1 0 15 0 2 20 chain 45325 chr12 133851895 + 109762522 109763125 L1PA8 5853 - 0 597 62687 93 1 0 19 2 1 33 21 20 8 1 0 69 2 0 45 2 1 48 0 1 259 chain 51458 chr12 133851895 + 109763126 109763792 L1PA8 5853 + 4579 5262 57999 92 8 5 16 3 9 157 0 5 141 0 8 65 2 1 4 0 2 178 chain 24626 chr12 133851895 + 109764928 109765228 AluSg7 307 - 0 298 106854 175 2 0 123 chain 3328 chr12 133851895 + 109771610 109771649 Tigger5 388 + 329 368 218446 39 chain 22210 chr12 133851895 + 109775184 109775548 THE1B 368 - 0 368 119305 37 8 7 12 1 2 4 1 0 51 38 41 14 0 1 4 3 5 21 1 0 169 chain 3029 chr12 133851895 + 109786180 109786212 MER3 215 + 166 198 224381 32 chain 21613 chr12 133851895 + 109788074 109788431 THE1B 368 + 0 366 121718 111 0 3 6 2 0 57 71 79 110 chain 9750 chr12 133851895 + 109795278 109795474 MER58B 340 - 9 249 161845 44 7 43 23 16 25 58 18 21 17 4 0 9 chain 31340 chr12 133851895 + 109829460 109829936 L1PA11 4918 - 351 807 81913 13 1 0 15 13 9 10 8 3 9 4 0 20 1 0 16 2 0 65 2 0 13 2 1 17 1 0 14 5 4 62 0 2 183 chain 4772 chr12 133851895 + 109841001 109841053 L1PA3long 6157 - 15 67 197672 52 chain 4249 chr12 133851895 + 109930146 109930198 MER3 215 - 157 209 203880 52 chain 44151 chr12 133851895 + 109933285 109933798 MER9a3 513 - 0 511 64008 222 1 0 35 1 0 145 4 3 94 0 1 11 chain 11415 chr12 133851895 + 109947073 109947239 L1PA8 5853 - 0 164 154615 85 9 8 19 2 1 51 chain 23736 chr12 133851895 + 109975507 109975805 AluYf5 307 - 5 307 111856 89 7 8 132 0 3 70 chain 61161 chr12 133851895 + 110020905 110021568 L1PA3long 6157 - 0 663 52271 663 chain 6410 chr12 133851895 + 110072045 110072177 HAL1-2a_MD 234 + 4 221 181948 28 14 0 7 25 0 16 0 124 42 chain 22333 chr12 133851895 + 110076946 110077300 THE1D 372 + 16 372 118762 36 12 0 116 18 25 48 0 7 48 12 13 27 2 1 35 chain 19456 chr12 133851895 + 110100749 110100988 7SK 245 - 6 245 128800 239 chain 3071 chr12 133851895 + 110130208 110130243 MER63C 923 - 835 870 223558 35 chain 2947 chr12 133851895 + 110137962 110137993 MIRb 242 + 101 132 226152 31 chain 21966 chr12 133851895 + 110219773 110220127 THE1B 368 + 0 368 120371 140 13 21 8 1 0 29 6 2 10 0 4 10 17 25 57 7 6 56 chain 29682 chr12 133851895 + 110239068 110239445 THE1C 375 + 0 375 85894 15 2 0 360 chain 3389 chr12 133851895 + 110254606 110254643 MIRc 230 + 91 128 217295 37 chain 5444 chr12 133851895 + 110256224 110256289 MIRb 242 - 109 174 190575 65 chain 2962 chr12 133851895 + 110273908 110273944 MIR 256 + 102 138 225839 36 chain 3366 chr12 133851895 + 110275989 110276025 L1MB7 1623 + 1384 1420 217738 36 chain 24489 chr12 133851895 + 110279545 110279845 AluSx 319 + 0 296 107606 9 4 0 287 chain 23911 chr12 133851895 + 110287766 110288075 L1PA8 5853 - 44 347 110857 49 1 0 19 3 2 60 2 1 70 2 0 44 1 0 58 chain 3977 chr12 133851895 + 110419648 110419693 MADE1 96 - 51 96 207727 45 chain 22166 chr12 133851895 + 110483128 110483408 AluSc5 308 + 13 300 119515 21 0 5 209 1 3 49 chain 3271 chr12 133851895 + 110484596 110484779 MER20 218 + 37 218 219578 29 21 21 19 98 96 16 chain 34165 chr12 133851895 + 110486959 110487918 LTR2B 499 + 8 499 77394 6 1 0 55 3 0 42 0 19 34 510 30 115 0 1 7 1 0 40 3 0 142 chain 29910 chr12 133851895 + 110487133 110487578 LTR7B 505 - 14 505 85066 37 14 13 54 0 1 21 1 0 46 0 1 36 0 2 15 28 0 13 3 27 12 0 38 60 0 10 105 chain 46025 chr12 133851895 + 110488148 110488701 MER41A 554 + 0 553 62023 401 1 0 84 0 1 67 chain 18777 chr12 133851895 + 110494466 110494785 THE1B 368 + 0 368 130750 90 0 44 35 71 76 61 1 0 4 0 1 57 chain 19895 chr12 133851895 + 110516377 110516610 AluSp 311 - 16 249 127501 18 0 2 143 2 0 70 chain 3303 chr12 133851895 + 110543147 110543184 MER102c 337 - 64 101 218926 37 chain 24685 chr12 133851895 + 110576238 110576536 AluSp 311 - 13 310 106520 166 1 0 131 chain 8462 chr12 133851895 + 110577922 110578033 L1PA8 5853 - 0 110 168501 92 2 1 17 chain 11006 chr12 133851895 + 110594611 110594821 L1M4c 1769 - 683 893 156180 43 21 18 84 30 33 32 chain 7360 chr12 133851895 + 110606603 110606699 MER68 562 + 0 95 175033 21 0 1 66 2 0 7 chain 136547 chr12 133851895 + 110610147 110611777 SVA_D 2077 + 0 2070 26734 13 5 0 12 5 0 540 0 396 30 0 2 9 0 52 197 33 62 32 1 2 37 1 0 4 24 0 13 5 1 359 1 0 309 chain 2363 chr12 133851895 + 110610958 110610991 SVA_D 2077 + 1024 1059 69605 12 0 2 21 chain 23679 chr12 133851895 + 110640262 110640546 AluSc 308 - 15 298 112156 162 2 0 82 0 1 38 chain 16444 chr12 133851895 + 110658481 110658863 MSTB 430 - 24 428 137083 97 64 77 16 19 27 36 56 57 94 chain 8574 chr12 133851895 + 110697193 110697300 MLT2C1 407 - 300 407 167888 107 chain 22730 chr12 133851895 + 110698972 110699235 AluSp 311 + 39 301 116921 192 1 0 70 chain 42606 chr12 133851895 + 110709139 110709669 MER41A 554 - 0 554 65891 15 0 1 23 4 23 205 0 3 95 5 6 183 chain 23658 chr12 133851895 + 110741231 110741518 AluSc5 308 - 25 308 112266 9 0 1 155 1 0 89 4 0 29 chain 22736 chr12 133851895 + 110749132 110749427 AluSg4 309 + 20 307 116892 89 1 0 44 11 4 150 chain 4158 chr12 133851895 + 110757654 110757852 Tigger4a 237 + 10 237 205128 16 12 27 38 114 128 18 chain 22310 chr12 133851895 + 110778068 110778365 AluSp 311 + 9 304 118874 10 3 1 169 8 8 107 chain 10150 chr12 133851895 + 110789533 110789650 AluY 311 + 5 123 159847 64 0 1 53 chain 20011 chr12 133851895 + 110836487 110836770 AluSp 311 + 10 300 127107 13 3 0 43 10 22 147 5 3 62 chain 10112 chr12 133851895 + 110842784 110843265 LTR7 482 - 0 482 160031 79 324 302 42 13 36 23 chain 106978 chr12 133851895 + 110844794 110846543 HERVH-int 3825 - 0 1998 34979 183 425 651 189 11 0 226 0 25 456 0 5 132 0 4 127 chain 25172 chr12 133851895 + 110846550 110846929 LTR7B 505 + 0 496 103899 106 1 11 54 18 86 32 2 1 21 1 42 88 11 10 45 chain 27215 chr12 133851895 + 110848507 110848873 LTR7 482 - 0 482 95542 176 0 1 20 0 31 31 1 2 10 1 11 52 0 50 52 0 23 23 chain 3740 chr12 133851895 + 110854441 110854483 MER34D 576 + 0 42 211335 42 chain 35837 chr12 133851895 + 110855650 110856437 LTR15 485 - 10 485 75083 7 0 4 7 1 2 19 8 0 152 1 5 9 311 0 119 0 2 21 4 0 128 chain 28272 chr12 133851895 + 110855865 110856165 AluYa5 310 - 9 310 92034 94 0 1 206 chain 36715 chr12 133851895 + 110859239 110859712 LTR15 485 + 0 478 73935 107 0 1 42 0 2 131 0 4 142 8 0 8 0 5 14 0 1 21 chain 24755 chr12 133851895 + 110861717 110862011 AluSp 311 - 18 311 106143 246 2 1 46 chain 23986 chr12 133851895 + 110869434 110869724 AluY 311 + 0 287 110404 102 0 7 100 10 0 78 chain 5878 chr12 133851895 + 110915820 110916143 L1MC4 1079 - 672 1008 186393 30 78 71 13 36 32 49 98 122 19 chain 22882 chr12 133851895 + 110917361 110917628 AluSc5 308 + 0 266 116179 131 1 0 135 chain 24553 chr12 133851895 + 110924943 110925229 AluSp 311 - 16 301 107232 118 1 0 167 chain 6897 chr12 133851895 + 110938572 110938650 LTR12F 595 - 115 193 178213 78 chain 3321 chr12 133851895 + 110953714 110953753 MIR 256 - 100 139 218548 39 chain 2948 chr12 133851895 + 110994940 110995027 MER33 330 + 14 98 226093 32 41 38 14 chain 21852 chr12 133851895 + 110995513 110995832 THE1C 375 - 0 367 120810 188 0 1 43 1 0 4 25 76 5 3 0 50 chain 21720 chr12 133851895 + 111003056 111003350 AluSg7 307 - 15 298 121316 7 11 0 133 0 3 7 14 12 74 1 0 47 chain 75432 chr12 133851895 + 111007842 111008810 LTR5_Hs 974 + 0 974 45801 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 40560 chr12 133851895 + 111008810 111009325 HERVK-int 6823 + 0 494 68497 5 1 0 17 1 0 20 1 0 20 1 0 38 1 0 21 15 12 17 12 0 306 1 0 38 chain 10129 chr12 133851895 + 111023791 111023983 MER20 218 - 19 204 159949 33 6 7 16 14 10 42 13 6 7 0 4 55 1 0 5 chain 22942 chr12 133851895 + 111064568 111064865 AluSp 311 - 5 300 115898 82 20 18 195 chain 93273 chr12 133851895 + 111066900 111068037 L1PA7 6471 + 5310 6467 38575 111 1 0 200 0 3 233 1 0 133 0 3 166 0 17 28 1 2 126 1 0 101 4 3 31 chain 4498 chr12 133851895 + 111070410 111070490 MADE1 96 - 0 96 200803 47 9 0 7 1 26 16 chain 23160 chr12 133851895 + 111110426 111110769 THE1A 353 + 0 353 114854 44 0 2 14 24 25 25 2 1 81 1 5 145 0 4 7 chain 119973 chr12 133851895 + 111110769 111112293 THE1A-int 1579 + 0 1574 31068 150 0 1 136 0 1 105 4 13 170 0 1 86 5 35 26 0 1 158 0 3 493 11 10 16 0 1 6 1 0 80 1 6 76 chain 29022 chr12 133851895 + 111117376 111117680 AluYb8 318 + 0 304 88897 304 chain 119383 chr12 133851895 + 111144322 111145735 L1PA6 6164 - 2 1425 31271 6 4 0 329 0 1 427 0 1 78 0 8 12 0 4 96 6 9 54 3 0 398 chain 8376 chr12 133851895 + 111164463 111164567 Tigger4a 237 + 31 135 168994 104 chain 32905 chr12 133851895 + 111208750 111209204 MER4A1 472 + 0 472 79364 15 0 2 4 0 1 11 1 0 8 3 5 135 5 4 35 13 28 224 chain 45448 chr12 133851895 + 111210404 111210982 LTR19B 566 - 6 566 62549 46 0 1 45 0 1 5 0 2 220 1 0 199 27 6 35 chain 5511 chr12 133851895 + 111210995 111211062 MER41B 635 - 308 376 189936 53 0 1 14 chain 21354 chr12 133851895 + 111215140 111215430 AluSx3 311 + 8 293 122672 56 2 0 57 5 6 157 4 0 9 chain 9582 chr12 133851895 + 111225681 111225799 MER21A 919 - 613 732 162683 26 0 1 92 chain 8621 chr12 133851895 + 111227026 111227147 MSTA 426 + 315 424 167628 51 13 1 57 chain 4991 chr12 133851895 + 111237128 111237186 MLT1E1A 663 - 451 509 195237 58 chain 39100 chr12 133851895 + 111256626 111257164 MER41A 554 - 0 541 70599 66 5 6 48 0 1 54 1 0 92 0 19 9 19 0 38 9 8 80 4 7 113 chain 23994 chr12 133851895 + 111275148 111275439 AluY 311 + 5 297 110359 127 0 1 164 chain 22358 chr12 133851895 + 111276892 111277194 AluSq2 311 + 10 304 118674 30 4 1 78 1 0 14 0 1 164 5 0 6 chain 44870 chr12 133851895 + 111278607 111279159 MER41A 554 - 0 554 63212 329 4 6 219 chain 165617 chr12 133851895 + 111304118 111306514 SVA_F 1814 - 0 1804 22565 695 227 0 157 122 10 71 0 1 6 254 0 864 chain 1403 chr12 133851895 + 111304813 111304843 SVA_F 1814 - 886 916 168493 30 chain 4095 chr12 133851895 + 111304843 111304908 SVA_F 1814 - 1045 1150 200395 15 9 49 41 chain 9102 chr12 133851895 + 111304922 111305040 SVA_F 1814 - 803 936 137119 10 1 0 38 0 15 60 0 1 9 chain 3703 chr12 133851895 + 111305197 111305237 SVA_F 1814 - 676 716 81847 40 chain 7416 chr12 133851895 + 111305237 111305319 SVA_F 1814 - 540 622 78473 82 chain 19082 chr12 133851895 + 111305396 111305607 SVA_F 1814 - 699 924 78473 148 0 15 54 1 0 8 chain 4325 chr12 133851895 + 111333458 111333506 MIRb 242 + 94 142 202887 48 chain 6162 chr12 133851895 + 111334748 111334823 MER5A 189 - 114 189 183861 75 chain 22145 chr12 133851895 + 111360040 111360322 AluSx 319 + 12 294 119605 12 0 8 255 8 0 7 chain 3869 chr12 133851895 + 111372038 111372084 MER117 194 + 100 146 209322 46 chain 156916 chr12 133851895 + 111387779 111389646 SVA_D 2077 - 11 2037 23739 125 0 20 391 1 0 113 0 1 15 9 8 4 0 1 63 48 0 26 11 37 4 0 1 176 0 51 44 0 83 138 0 1 673 14 39 12 chain 3844 chr12 133851895 + 111428401 111428443 MER46C 351 - 124 166 209734 42 chain 16183 chr12 133851895 + 111446986 111447291 THE1B 368 - 65 368 137807 89 48 45 16 44 45 108 chain 4818 chr12 133851895 + 111451323 111451501 LTR16C 481 + 191 382 197145 42 104 117 32 chain 4283 chr12 133851895 + 111460705 111460763 MIR 256 + 89 148 203437 10 0 2 12 1 0 35 chain 2898 chr12 133851895 + 111529861 111529930 MLT1C 463 - 377 458 227067 29 26 38 14 chain 3415 chr12 133851895 + 111556619 111556657 MER5B 177 - 71 109 216855 38 chain 4948 chr12 133851895 + 111563782 111563908 MLT2B4 540 - 4 103 195727 21 55 28 50 chain 14205 chr12 133851895 + 111565516 111565836 THE1B 368 - 30 368 143863 96 1 0 12 7 6 10 0 1 4 5 13 15 13 12 38 70 84 34 2 0 13 chain 27195 chr12 133851895 + 111568859 111569214 THE1A 353 - 0 352 95611 151 3 0 92 2 1 66 0 1 19 1 0 4 0 1 17 chain 128303 chr12 133851895 + 111569215 111571101 THE1A-int 1579 - 0 1579 28494 582 0 1 5 1 0 415 1 0 135 317 0 175 0 5 149 0 6 106 chain 23260 chr12 133851895 + 111607961 111608258 AluSp 311 + 0 298 114385 47 1 11 227 9 0 13 chain 4610 chr12 133851895 + 111611590 111611663 MER5A 189 - 72 146 199510 31 10 11 32 chain 27559 chr12 133851895 + 111680597 111680919 L1PA7 6471 - 89 411 94473 322 chain 24767 chr12 133851895 + 111696041 111696335 AluSx 319 + 7 301 106072 294 chain 3034 chr12 133851895 + 111717170 111717220 MLT1C 463 + 0 51 224313 22 5 6 23 chain 48007 chr12 133851895 + 111778349 111778935 LTR10C 591 + 0 591 60484 15 0 5 37 0 2 194 0 1 4 2 1 16 5 3 313 chain 30194 chr12 133851895 + 111803308 111803674 L1PA8A 6298 + 5921 6289 84216 213 0 1 87 0 1 66 chain 123608 chr12 133851895 + 111809423 111811258 THE1A-int 1579 - 5 1579 29840 4 0 1 582 2 1 447 1 0 54 0 1 4 342 76 234 0 1 97 0 2 53 0 2 15 chain 17618 chr12 133851895 + 111811558 111811763 L1PA5 6144 - 0 206 133941 11 2 3 192 chain 23162 chr12 133851895 + 111811842 111812139 THE1A 353 - 52 348 114847 191 2 1 104 chain 5175 chr12 133851895 + 111830501 111830566 MIRb 242 + 67 132 193284 65 chain 5955 chr12 133851895 + 111840221 111840338 L1MA3 4352 - 20 127 185636 4 1 0 13 6 5 22 1 0 6 1 0 23 2 0 24 4 0 10 chain 26163 chr12 133851895 + 111840456 111840757 AluSp 311 - 6 305 99354 5 2 0 294 chain 13345 chr12 133851895 + 111917431 111917633 MER30 238 + 0 238 146912 14 10 28 57 7 0 17 0 25 97 chain 6670 chr12 133851895 + 111938720 111938958 L1MA3 4352 + 4119 4322 179902 50 82 78 13 2 0 22 1 0 5 2 1 22 27 0 12 chain 3240 chr12 133851895 + 111942396 111942433 L1MB8 1703 + 508 545 220217 37 chain 7391 chr12 133851895 + 111942681 111942771 MER41C 542 - 7 128 174826 82 0 31 8 chain 138455 chr12 133851895 + 111944441 111945974 SVA_D 2077 + 8 2074 26400 532 0 40 331 0 489 44 0 1 4 0 1 348 0 1 177 0 1 97 chain 3758 chr12 133851895 + 111959589 111959644 MER41B 635 - 94 154 210990 24 0 4 9 1 2 21 chain 19516 chr12 133851895 + 111993128 111993456 THE1C 375 + 0 335 128612 13 2 0 31 44 51 85 5 6 101 6 7 41 chain 3317 chr12 133851895 + 112002646 112002686 U7 62 - 21 61 218632 40 chain 19230 chr12 133851895 + 112004759 112005014 Tigger1 2417 + 1651 1907 129435 59 5 6 191 chain 3339 chr12 133851895 + 112009881 112009920 MER58C 217 + 145 184 218255 39 chain 23241 chr12 133851895 + 112067303 112067607 AluSp 311 - 6 310 114486 150 18 18 136 chain 22342 chr12 133851895 + 112085436 112085723 AluSp 311 + 9 311 118735 31 4 14 191 0 5 61 chain 24157 chr12 133851895 + 112107036 112107328 AluSp 311 - 15 310 109443 106 1 4 185 chain 8881 chr12 133851895 + 112148892 112149000 LTR10C 591 + 0 108 166226 108 chain 80519 chr12 133851895 + 112160212 112161154 SVA_D 2077 - 21 1010 43381 109 0 1 508 2 98 129 49 0 108 1 0 36 chain 4182 chr12 133851895 + 112160960 112161009 SVA_D 2077 - 1044 1093 114221 49 chain 104183 chr12 133851895 + 112161185 112162597 SVA_F 1814 - 595 1814 35695 4 0 1 251 0 15 40 0 12 8 3 0 242 224 28 57 22 0 561 chain 8873 chr12 133851895 + 112161832 112161957 SVA_F 1814 - 1227 1352 136637 125 chain 5419 chr12 133851895 + 112201217 112201282 THE1B 368 - 4 73 190809 59 0 4 6 chain 18529 chr12 133851895 + 112238870 112239156 THE1B 368 - 61 368 131429 23 2 0 34 42 52 29 1 0 86 0 14 69 chain 5435 chr12 133851895 + 112243049 112243111 AluJr 308 + 147 209 190653 62 chain 49588 chr12 133851895 + 112249580 112250213 LTR13 1007 - 0 1007 59332 31 3 1 269 9 12 65 2 1 110 0 376 69 2 0 73 chain 76197 chr12 133851895 + 112258551 112259607 MER11C 1089 - 16 1089 45365 8 0 1 145 1 0 53 0 1 127 0 1 38 1 0 4 7 12 81 71 70 146 1 0 65 0 4 60 6 15 242 chain 22396 chr12 133851895 + 112265776 112266238 MER51B 395 + 11 395 118505 28 8 27 76 112 0 103 1 0 7 7 8 33 4 16 5 1 0 17 0 4 60 chain 3576 chr12 133851895 + 112266692 112266736 MER5A1 166 + 67 111 214039 44 chain 557943 chr12 133851895 + 112266982 112273113 L1PA3long 6157 - 15 6153 505 139 0 1 2830 0 1 614 0 1 1984 0 4 564 chain 108151 chr12 133851895 + 112273275 112274615 LTR12C 1709 + 0 1709 34673 303 0 1 110 0 1 4 1 0 45 0 1 184 0 280 183 1 0 4 8 6 94 24 14 225 0 101 71 1 0 82 chain 5618 chr12 133851895 + 112275358 112275505 MLT1C 463 + 59 221 188892 46 0 5 9 17 11 10 1 0 5 22 33 11 1 5 11 0 2 14 chain 6356 chr12 133851895 + 112285927 112286121 L1ME1 1623 - 336 533 182334 74 86 84 14 5 10 15 chain 34522 chr12 133851895 + 112288131 112288661 Tigger2 2703 + 843 1390 76878 87 26 41 61 6 8 19 1 0 209 37 39 64 1 0 19 chain 21806 chr12 133851895 + 112290903 112291189 AluY 311 + 16 296 120995 102 7 0 14 1 2 162 chain 98441 chr12 133851895 + 112343353 112345278 L1M1 2793 + 492 2245 37178 7 1 0 10 1 0 11 3 0 14 1 0 8 2 1 10 184 108 34 46 36 9 2 0 5 2 0 21 3 0 9 20 27 29 11 8 54 18 15 75 6 8 12 1 0 20 22 21 101 0 1 36 6 5 42 0 1 21 11 7 65 5 7 108 0 1 86 0 4 28 93 1 111 1 2 58 0 4 6 0 4 54 3 1 53 2 1 141 4 7 106 17 25 63 5 3 48 chain 5536 chr12 133851895 + 112379279 112379357 MER3 215 - 31 115 189702 10 1 7 67 chain 15096 chr12 133851895 + 112383627 112383823 MER47A 366 + 65 266 141050 26 6 3 95 0 8 69 chain 38250 chr12 133851895 + 112384011 112384500 MER9a3 513 - 0 513 71775 77 0 3 11 0 2 164 1 0 145 0 1 68 0 17 5 0 2 18 chain 7487 chr12 133851895 + 112384599 112384734 MER85 139 + 0 139 174225 42 9 13 41 8 9 11 2 1 22 chain 136534 chr12 133851895 + 112394298 112396094 SVA_B 1603 + 5 1603 26740 15 27 0 19 1 25 282 0 1 84 116 0 464 1 0 4 0 1 76 1 0 14 1 0 59 78 0 554 chain 436971 chr12 133851895 + 112396130 112401616 L1PA7 6471 + 1284 6456 9128 46 1 0 11 0 1 4 1 0 1017 0 2 275 4 0 44 5 0 169 0 3 30 0 4 269 327 0 200 5 6 132 1 0 81 0 4 399 1 0 85 0 1 149 0 5 441 6 10 222 0 1 91 0 1 634 0 3 58 0 1 159 12 0 353 0 1 54 0 6 200 chain 22865 chr12 133851895 + 112415929 112416218 AluSx3 311 + 6 300 116260 125 1 2 117 1 5 45 chain 8870 chr12 133851895 + 112423724 112423877 L1MB3 1562 + 3 150 166281 13 8 7 35 9 5 83 1 0 4 chain 69725 chr12 133851895 + 112432135 112432999 MER11D 897 - 6 897 48508 111 1 2 102 2 0 59 10 33 175 0 5 404 chain 5308 chr12 133851895 + 112448392 112448540 MER52C 1267 - 213 324 191936 47 76 39 25 chain 7047 chr12 133851895 + 112476419 112476497 MER30 238 - 0 78 177139 78 chain 24845 chr12 133851895 + 112496585 112496906 AluY 311 + 5 311 105649 127 0 1 36 16 0 142 chain 22091 chr12 133851895 + 112500252 112500542 AluSq 315 + 6 297 119833 130 11 9 7 0 3 142 chain 21791 chr12 133851895 + 112531788 112532069 AluY 311 + 27 307 121052 75 2 0 5 1 2 14 1 0 9 0 1 174 chain 26916 chr12 133851895 + 112547040 112547347 AluY 311 + 1 308 96569 18 0 1 113 1 0 175 chain 48299 chr12 133851895 + 112547368 112548292 PABL_A 660 - 0 660 60243 223 303 0 150 1 45 152 10 5 85 chain 4176 chr12 133851895 + 112550123 112550188 MER53 195 + 139 194 204890 42 10 0 13 chain 20981 chr12 133851895 + 112551545 112551826 AluYk4 311 - 14 311 123985 17 7 1 22 3 2 55 1 25 101 1 0 74 chain 24783 chr12 133851895 + 112559261 112559570 AluSp 311 - 7 311 105978 11 5 0 293 chain 29390 chr12 133851895 + 112583663 112583983 L1PA3long 6157 + 5837 6157 87125 320 chain 8715 chr12 133851895 + 112587172 112587274 HY1 111 + 9 111 167110 102 chain 332580 chr12 133851895 + 112593036 112597452 L1P3 4156 - 21 4156 12106 20 1 5 43 309 0 335 1 0 159 0 5 15 5 9 87 0 1 69 1 4 224 1 0 272 6 10 170 0 4 73 1 2 69 19 0 40 0 2 1130 5 8 152 1 0 13 0 4 53 1 12 258 0 1 91 1 2 43 7 10 94 2 1 242 0 2 80 2 1 69 9 8 243 chain 23361 chr12 133851895 + 112602728 112603015 AluSg7 307 - 7 302 113865 41 1 6 121 0 1 109 1 3 14 chain 24520 chr12 133851895 + 112624783 112625079 AluSp 311 - 12 311 107439 246 3 6 47 chain 17330 chr12 133851895 + 112673925 112674164 LTR29 598 - 76 326 134712 65 0 1 91 1 4 7 0 8 31 2 1 42 chain 2406 chr12 133851895 + 112695683 112695711 L1ME1 1623 - 341 369 234148 28 chain 21266 chr12 133851895 + 112704880 112705112 7SK 245 + 0 232 122968 232 chain 28894 chr12 133851895 + 112706672 112706976 AluYg6 310 - 6 310 89483 304 chain 22667 chr12 133851895 + 112714279 112714547 AluSc 308 - 38 308 117234 151 0 1 78 0 1 39 chain 57253 chr12 133851895 + 112772055 112773219 L1PB1 5432 + 4539 5324 54365 82 2 0 168 323 0 15 1 0 299 39 11 24 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 41 10 9 10 3 0 6 20 9 13 chain 23798 chr12 133851895 + 112817977 112818266 AluSz 310 + 11 295 111487 271 5 0 13 chain 90400 chr12 133851895 + 112827621 112828638 L1PA5 6144 + 5130 6144 39507 167 0 4 689 7 0 154 chain 210406 chr12 133851895 + 112832775 112836762 L1PA8 5853 + 1098 5853 18477 501 5 6 283 616 0 138 1 0 459 0 4 218 111 2119 121 300 0 59 8 6 131 5 4 417 1 0 46 2 0 36 315 0 11 3 0 21 2 1 9 10 9 43 2 1 19 1 0 93 chain 29145 chr12 133851895 + 112840980 112841288 AluYa5 310 - 2 310 88342 308 chain 20149 chr12 133851895 + 112870972 112871229 Tigger3c 601 + 309 570 126682 74 0 4 183 chain 6214 chr12 133851895 + 112880068 112880229 Tigger4a 237 - 0 158 183467 44 7 0 10 5 13 22 45 41 28 chain 22840 chr12 133851895 + 112883440 112883743 AluSp 311 - 9 311 116394 20 8 6 164 1 2 110 chain 23147 chr12 133851895 + 112887024 112887335 AluY 311 + 0 294 114902 53 4 1 81 1 0 152 13 0 7 chain 50783 chr12 133851895 + 112894750 112895498 L1PA8 5853 - 0 674 58444 45 0 1 47 1 0 19 2 1 39 126 23 43 0 32 41 1 0 47 1 0 336 chain 111797 chr12 133851895 + 112956864 112958259 LTR12C 1709 - 0 1709 33722 84 1 0 45 0 2 116 8 0 234 0 4 106 3 1 5 1 0 104 0 278 349 0 43 293 0 4 8 14 9 24 chain 26103 chr12 133851895 + 112959956 112961521 HSMAR2 1300 + 51 1299 99609 294 1184 865 55 11 13 21 chain 13704 chr12 133851895 + 112968309 112968464 L1PA3long 6157 - 15 170 145589 155 chain 10040 chr12 133851895 + 112980429 112980545 MER41B 635 + 511 627 160383 116 chain 36597 chr12 133851895 + 112986610 112987141 MER1A 529 - 0 529 74102 57 0 15 10 22 4 346 21 21 35 15 16 25 chain 28892 chr12 133851895 + 112990375 112990728 L1PA7 6471 - 10 365 89487 145 1 3 207 chain 21872 chr12 133851895 + 113004704 113005062 THE1D 372 + 0 372 120743 111 0 1 48 9 10 10 1 0 4 7 12 14 13 14 70 13 20 58 chain 21426 chr12 133851895 + 113018929 113019279 THE1B 368 - 0 368 122421 115 26 39 14 1 0 15 1 0 4 0 1 11 1 0 99 5 7 16 9 14 33 chain 15285 chr12 133851895 + 113038374 113038552 THE1D-int 1627 - 1406 1585 140525 107 0 1 71 chain 16185 chr12 133851895 + 113038646 113038954 THE1D 372 - 48 364 137803 78 7 22 4 0 1 26 28 27 27 2 3 57 11 12 21 18 9 29 chain 560571 chr12 133851895 + 113059001 113065032 L1PA2 6032 + 3 6032 325 3138 0 4 2879 6 0 8 chain 24724 chr12 133851895 + 113081577 113081910 L1PB4 2604 + 2195 2547 106300 122 0 18 70 1 2 140 chain 36165 chr12 133851895 + 113094629 113095146 L1PB4 2604 - 228 756 74687 125 0 3 5 2 0 17 23 24 69 6 14 221 0 1 49 chain 27154 chr12 133851895 + 113106246 113106590 L1PA8 5853 + 5474 5815 95741 41 0 2 47 1 0 46 2 0 128 4 3 19 1 0 55 chain 3424 chr12 133851895 + 113127034 113127164 MER102c 337 - 64 204 216707 28 74 84 28 chain 4758 chr12 133851895 + 113130292 113130349 MER33 330 - 268 325 197825 57 chain 6224 chr12 133851895 + 113167325 113167400 LTR73 568 - 493 568 183373 75 chain 44007 chr12 133851895 + 113201070 113201681 MER4B 649 - 10 647 64198 6 1 0 69 1 0 177 3 7 157 4 10 6 0 5 17 0 12 112 19 20 39 chain 3093 chr12 133851895 + 113206268 113206307 L2a 937 + 646 684 223043 13 1 0 25 chain 17332 chr12 133851895 + 113210559 113211019 L1PB1 5432 - 8 385 134706 4 1 0 16 1 0 11 6 5 18 1 0 12 14 12 14 8 5 19 28 17 10 1 0 44 1 0 16 2 1 53 2 0 9 16 11 13 1 0 17 3 0 1 49 0 11 1 2 51 1 0 5 chain 2673 chr12 133851895 + 113240119 113240187 MIRb 242 + 69 139 230484 12 17 16 19 1 4 19 chain 9488 chr12 133851895 + 113248837 113249007 MER82 654 + 23 198 163124 53 2 0 33 22 26 10 1 0 4 1 5 44 chain 17247 chr12 133851895 + 113265505 113265711 L1PA7 6471 + 6262 6469 134935 187 0 1 19 chain 3435 chr12 133851895 + 113272448 113272487 L1ME1 1623 - 494 533 216478 39 chain 5259 chr12 133851895 + 113319297 113319363 MIRb 242 - 104 170 192417 66 chain 32518 chr12 133851895 + 113340921 113341343 MER4A1 472 - 26 472 79993 100 0 1 26 0 1 70 1 22 162 1 0 47 0 2 15 chain 41096 chr12 133851895 + 113341351 113341949 MER4-int 2692 - 0 609 67771 196 1 5 30 32 30 42 5 8 94 1 0 9 5 8 146 0 4 37 chain 33155 chr12 133851895 + 113341949 113342392 LTR2 463 + 0 463 78978 162 8 29 4 1 0 165 16 17 64 1 0 22 chain 118692 chr12 133851895 + 113351772 113353631 L1PB1 5432 - 10 1660 31536 4 1 0 14 1 0 13 1 0 16 0 8 21 56 42 7 2 0 13 1 0 47 1 0 16 2 1 26 9 10 16 2 0 9 5 1 14 3 2 4 1 0 24 25 16 288 6 7 109 189 2 62 0 1 51 2 9 763 1 0 34 chain 29934 chr12 133851895 + 113367751 113368152 MSTA 426 + 18 417 85008 185 1 0 4 4 0 6 1 5 148 1 0 51 chain 529418 chr12 133851895 + 113390798 113397286 L1PA5 6144 - 4 6144 4253 846 1 0 322 0 1 92 341 0 109 0 1 27 0 8 742 0 2 274 27 1 24 0 10 1486 0 2 1024 9 0 439 0 1 4 2 1 579 0 14 28 10 1 102 chain 6099 chr12 133851895 + 113406153 113406310 MER53 195 + 0 168 184420 14 16 26 52 36 41 6 4 0 29 chain 24397 chr12 133851895 + 113426103 113426431 MER57B1 401 - 74 401 108095 29 10 8 231 1 2 57 chain 34444 chr12 133851895 + 113429140 113429594 MER4A1 472 - 14 472 77004 215 16 17 72 1 0 36 0 4 114 chain 3456 chr12 133851895 + 113439391 113439427 MLT1D 503 - 215 251 216065 36 chain 12834 chr12 133851895 + 113451564 113451743 LTR26B 539 - 355 539 148911 30 0 4 42 10 11 97 chain 6663 chr12 133851895 + 113457257 113457360 MLT1D 503 - 8 107 179966 58 12 8 33 chain 3472 chr12 133851895 + 113462357 113462401 MER3 215 + 125 169 215781 44 chain 16882 chr12 133851895 + 113462880 113463253 MLT1B 390 + 77 390 135887 33 102 43 21 16 12 10 18 21 173 chain 15609 chr12 133851895 + 113471006 113471205 THE1B 368 + 174 368 139556 26 2 0 89 4 1 78 chain 3440 chr12 133851895 + 113485366 113485581 MLT1B 390 - 38 233 216377 5 0 1 24 6 7 21 143 121 16 chain 11183 chr12 133851895 + 113526281 113526423 L1PA6 6164 + 6022 6161 155499 132 3 0 7 chain 3657 chr12 133851895 + 113556100 113556145 MER6C 202 + 157 202 212619 45 chain 5482 chr12 133851895 + 113594132 113594203 LTR2C 499 - 0 72 177817 63 0 1 8 chain 9028 chr12 133851895 + 113594203 113594341 LTR2C 499 + 387 499 165448 54 0 1 11 27 0 46 chain 7386 chr12 133851895 + 113616229 113616324 HY4 93 - 0 93 174862 22 2 0 71 chain 4607 chr12 133851895 + 113625799 113625857 MLT1B 390 - 5 63 199538 58 chain 3405 chr12 133851895 + 113659944 113659986 MIR3 191 + 71 113 216991 42 chain 26024 chr12 133851895 + 113763370 113763667 AluYk4 311 - 13 311 99928 188 1 2 108 chain 45430 chr12 133851895 + 113773774 113774330 MER41A 554 + 0 554 62562 34 8 9 99 3 0 412 chain 3767 chr12 133851895 + 113774418 113774464 U6 107 - 51 100 210853 9 0 3 37 chain 3964 chr12 133851895 + 113817834 113817902 MER2 342 - 136 211 207920 37 7 13 20 0 1 4 chain 4899 chr12 133851895 + 113833298 113833354 MLT1J 494 + 101 157 196276 56 chain 21070 chr12 133851895 + 113838676 113838921 AluY 311 + 0 285 123658 128 0 40 117 chain 27289 chr12 133851895 + 113928774 113929117 THE1A 353 + 0 341 95306 107 4 3 88 1 0 143 chain 131565 chr12 133851895 + 113929129 113930715 THE1A-int 1579 + 0 1579 27730 19 17 9 1545 0 1 5 chain 26736 chr12 133851895 + 113930715 113931070 THE1A 353 + 0 353 97198 66 1 0 35 11 10 87 1 0 97 0 1 57 chain 41787 chr12 133851895 + 113951556 113952510 MER41B 635 + 0 615 66919 93 1 0 33 0 1 97 0 1 201 31 0 36 355 41 46 12 17 49 chain 102980 chr12 133851895 + 113967551 113968888 THE1B-int 1605 + 294 1605 35994 7 0 1 130 0 25 8 0 2 51 57 3 88 1 0 990 0 1 5 chain 25582 chr12 133851895 + 113968905 113969241 THE1B 368 + 18 368 101814 26 6 21 111 1 0 192 chain 2971 chr12 133851895 + 113974325 113974361 MIRb 242 + 98 134 225640 36 chain 29831 chr12 133851895 + 114009898 114010412 L1PA11 4918 - 289 768 85344 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 1 0 15 46 33 18 1 0 14 2 0 67 2 0 13 2 1 57 4 5 181 chain 43301 chr12 133851895 + 114021580 114022132 MER41A 554 - 0 554 65049 233 1 0 7 9 10 131 3 4 75 0 1 93 chain 28922 chr12 133851895 + 114045600 114045908 AluYg6 310 + 0 308 89364 308 chain 45381 chr12 133851895 + 114053027 114053805 L1PB1 5432 + 4695 5392 62613 33 1 0 35 0 8 243 7 9 78 74 14 19 1 0 6 7 6 10 2 0 3 2 0 7 2 0 54 2 1 15 1 0 45 1 0 8 21 8 30 2 0 4 1 0 15 2 0 24 1 0 22 chain 4201 chr12 133851895 + 114056716 114056768 MIR 256 - 106 158 204521 52 chain 4767 chr12 133851895 + 114062745 114062866 L1MC3 1789 - 637 764 197729 36 8 12 13 15 31 11 14 0 24 chain 21040 chr12 133851895 + 114064469 114064817 THE1B 368 + 0 368 123764 78 0 1 35 0 2 61 38 32 4 0 1 18 15 21 66 1 17 32 chain 4914 chr12 133851895 + 114090342 114090403 MER20 218 - 61 122 196123 61 chain 5768 chr12 133851895 + 114167768 114167840 LTR16E1 515 + 443 515 187457 72 chain 28334 chr12 133851895 + 114215004 114215299 AluYb8 318 - 23 318 91821 295 chain 27892 chr12 133851895 + 114248784 114249115 L1PA7 6471 - 15 347 93389 147 1 2 183 chain 130061 chr12 133851895 + 114309693 114311504 SVA_F 1814 + 335 1814 28076 457 0 40 41 82 0 11 0 6 8 1 0 49 0 15 39 180 0 4 1 0 166 129 0 643 chain 4573 chr12 133851895 + 114310221 114310273 SVA_F 1814 + 1017 1069 107804 52 chain 10378 chr12 133851895 + 114310381 114310499 SVA_F 1814 + 1175 1291 107804 12 1 0 87 1 0 17 chain 2041 chr12 133851895 + 114310527 114310560 SVA_F 1814 + 855 888 131177 33 chain 8414 chr12 133851895 + 114310732 114310861 SVA_F 1814 + 931 995 115513 6 1 0 10 79 15 33 chain 4885 chr12 133851895 + 114310749 114310828 SVA_F 1814 + 1010 1089 131177 79 chain 4897 chr12 133851895 + 114340923 114341000 MER2 342 - 1 79 196289 41 7 8 29 chain 22933 chr12 133851895 + 114406736 114407094 THE1B 368 - 0 368 115947 124 1 0 6 15 29 16 22 16 60 7 9 83 0 1 24 chain 22944 chr12 133851895 + 114438063 114438423 THE1B 368 - 0 364 115890 43 0 1 31 1 0 16 6 7 89 10 9 48 23 24 55 0 5 25 2 0 11 chain 8746 chr12 133851895 + 114454602 114454803 MER30 238 - 0 238 166944 45 0 3 24 11 12 25 16 39 32 33 43 15 chain 9050 chr12 133851895 + 114459667 114459765 LTR7Y 441 + 334 432 165315 98 chain 24781 chr12 133851895 + 114459774 114460082 HERVH-int 3825 + 0 2085 105992 145 0 1777 163 chain 26782 chr12 133851895 + 114460106 114460475 LTR7 482 + 0 440 97036 54 23 61 109 0 1 38 1 32 17 0 1 127 chain 3392 chr12 133851895 + 114465817 114466219 LTR40a 516 - 82 473 217261 35 220 0 9 100 307 14 2 4 22 chain 32546 chr12 133851895 + 114493548 114493962 LTR7B 505 + 0 489 79950 105 0 11 59 0 38 12 0 25 6 1 0 22 0 2 82 1 0 86 0 1 40 chain 16341 chr12 133851895 + 114494024 114494334 HERVH-int 3825 + 45 396 137366 12 17 21 76 0 2 18 62 98 61 1 0 63 chain 32100 chr12 133851895 + 114500764 114501178 LTR7B 505 + 0 489 80691 108 0 10 55 16 79 26 0 2 24 0 1 54 1 0 130 chain 162230 chr12 133851895 + 114504933 114508216 HERVIP10F-int 4088 + 218 3289 23030 13 14 8 12 4 0 16 6 7 14 1 0 18 1 0 8 194 131 13 1 0 16 56 45 18 1 0 31 1 0 33 1 0 8 1 0 4 7 5 10 1 0 9 5 4 14 7 6 9 2 0 10 1 0 28 3 1 7 1 0 45 1 0 4 4 2 33 1 0 7 1 0 57 4 2 5 1 0 14 0 3 9 1 0 11 1 0 7 1 2 11 1 0 8 1 0 5 14 6 4 1 0 20 1 0 5 12 8 30 1 0 36 3 4 12 1 0 8 1 0 13 1 0 5 15 11 24 9 6 20 1 0 15 1 0 14 0 1 26 5 4 133 4 0 12 1 0 6 23 16 12 1 0 12 7 5 23 1 0 30 1 0 63 7 5 19 1 0 10 0 4 38 68 63 158 0 1 242 1 0 20 1 0 65 9 8 56 0 3 13 4 3 37 0 1 6 2 0 30 8 7 4 1 0 140 1 0 80 13 10 121 2 0 36 0 4 8 13 12 256 24 21 60 46 27 10 4 0 23 83 69 7 1 0 18 50 42 13 2 1 13 chain 119002 chr12 133851895 + 114521619 114522941 L1PA3long 6157 - 0 1336 31410 138 0 7 623 0 1 99 0 8 202 2 0 258 chain 92821 chr12 133851895 + 114522942 114523967 L1PA3long 6157 + 3796 4821 38702 254 1 0 546 0 1 224 chain 43418 chr12 133851895 + 114529954 114530477 MER9a1 513 + 0 513 64912 19 3 1 38 2 0 388 6 0 67 chain 21441 chr12 133851895 + 114538690 114538941 L1PA7 6471 - 900 1155 122367 92 0 5 129 1 0 29 chain 69137 chr12 133851895 + 114538951 114539827 L1PA7 6471 + 5572 6470 48744 26 0 4 12 0 5 67 4 7 5 0 2 19 0 3 83 0 3 182 0 3 143 4 5 170 2 0 159 chain 8654 chr12 133851895 + 114550837 114551135 THE1B 368 + 0 306 167454 47 37 47 13 129 127 72 chain 41004 chr12 133851895 + 114588517 114589011 L1PA7 6471 - 251 755 67896 35 0 3 158 10 14 17 0 3 274 chain 19696 chr12 133851895 + 114634718 114635098 MSTA 426 + 0 426 128114 36 12 13 56 23 51 50 52 50 40 1 21 75 1 0 34 chain 16920 chr12 133851895 + 114647088 114647293 L1PA6 6164 + 5953 6158 135794 23 1 0 4 0 1 177 chain 3193 chr12 133851895 + 114652978 114653015 MER5A1 166 + 58 95 221066 37 chain 13276 chr12 133851895 + 114669051 114669265 MER30 238 + 0 237 147186 15 4 11 76 8 27 42 2 0 6 0 2 20 5 2 36 chain 28439 chr12 133851895 + 114688502 114688874 THE1C 375 + 0 375 91425 127 8 12 211 1 0 25 chain 38946 chr12 133851895 + 114716753 114717211 LTR2 463 + 0 463 70806 75 0 1 51 0 3 301 0 1 31 chain 4519 chr12 133851895 + 114740594 114740657 MIRc 230 - 98 170 200560 15 1 10 47 chain 4142 chr12 133851895 + 114769714 114769767 MIR 256 + 78 131 205340 53 chain 23722 chr12 133851895 + 114787244 114787602 THE1B 368 + 0 368 111922 169 1 0 26 12 19 10 7 6 12 3 8 56 7 6 37 0 1 18 chain 20013 chr12 133851895 + 114866036 114866351 Tigger4b 360 + 41 358 127104 88 0 2 36 1 0 53 0 2 73 6 12 10 30 23 18 chain 10831 chr12 133851895 + 114912750 114912948 L1MA4 2864 - 578 781 156858 48 42 48 72 1 0 35 chain 113254 chr12 133851895 + 114922061 114923434 SVA_B 1603 - 0 1593 33297 6 3 0 441 8 8 138 0 1 16 1 4 39 0 127 114 0 77 33 0 2 119 1 0 407 3 32 18 15 0 11 chain 10587 chr12 133851895 + 114948081 114948206 L1PA7 6471 + 6343 6465 157884 116 3 0 6 chain 26902 chr12 133851895 + 114948919 114949746 L1MA3 4352 + 3778 4346 96622 25 42 43 165 128 102 89 221 0 33 4 0 18 7 5 24 3 2 4 1 0 29 1 0 11 6 2 16 chain 23345 chr12 133851895 + 114982310 114982592 AluY 311 + 4 288 113952 128 0 1 5 4 5 145 chain 12758 chr12 133851895 + 115023131 115023275 L1PA4 6152 + 6007 6151 149218 144 chain 26389 chr12 133851895 + 115023352 115023718 MER1A 529 - 0 354 98453 56 33 21 277 chain 17358 chr12 133851895 + 115026728 115026925 L1PA5 6144 + 5947 6144 134634 197 chain 40208 chr12 133851895 + 115029908 115030403 MER9a3 513 + 15 513 69018 95 0 1 65 13 14 244 0 1 78 chain 46143 chr12 133851895 + 115032278 115032871 L1PA8 5853 + 5267 5853 61901 297 1 0 44 3 1 70 1 0 9 15 14 34 9 8 16 1 0 93 chain 24368 chr12 133851895 + 115037458 115037762 THE1D-int 1627 + 12 316 108275 6 2 0 20 1 0 66 0 3 209 chain 29836 chr12 133851895 + 115046925 115047367 MLT2A2 560 + 3 560 85330 177 1 0 16 26 27 4 1 0 68 9 118 41 0 7 99 chain 16782 chr12 133851895 + 115057756 115057969 L1PA8 5853 - 0 210 136164 93 1 0 19 2 1 61 1 0 36 chain 23668 chr12 133851895 + 115060915 115061308 THE1D 372 + 0 372 112210 57 41 17 10 5 1 43 0 4 30 0 1 4 1 3 15 4 0 13 6 10 164 chain 23681 chr12 133851895 + 115072182 115072464 AluY 311 + 11 297 112143 61 0 3 57 0 1 164 chain 24052 chr12 133851895 + 115081486 115081772 AluSp 311 + 1 290 110029 90 0 3 196 chain 5022 chr12 133851895 + 115176480 115176618 MIR 256 - 30 186 194904 22 66 84 50 chain 93084 chr12 133851895 + 115248089 115249493 L1PA5 6144 + 5073 6144 38635 221 3 0 162 326 0 51 1 0 624 3 0 13 chain 53681 chr12 133851895 + 115304865 115305473 L1PA5 6144 + 5526 6128 56557 284 0 1 148 1 0 133 6 0 36 chain 5193 chr12 133851895 + 115310088 115310173 Tigger2a 444 - 353 444 193117 37 11 17 37 chain 10957 chr12 133851895 + 115339962 115340104 L1PA8 5853 - 0 140 156371 92 2 1 19 2 1 27 chain 37041 chr12 133851895 + 115349877 115350903 L1MA6 2487 + 1697 2402 73469 133 324 53 47 1 0 67 7 6 25 5 10 28 9 6 112 0 4 37 23 7 34 111 77 36 3 0 19 1 0 4 chain 17354 chr12 133851895 + 115350105 115350306 L1PA5 6144 + 5931 6132 134644 201 chain 25427 chr12 133851895 + 115368182 115368495 AluYk4 311 + 0 298 102563 132 2 0 157 13 0 9 chain 7442 chr12 133851895 + 115369255 115369357 L1M3 994 - 675 776 174498 25 1 0 76 chain 37785 chr12 133851895 + 115427421 115427965 MLT2A2 560 - 0 560 72436 43 2 0 6 7 9 13 0 1 76 0 11 221 14 13 22 10 14 48 0 1 82 chain 25131 chr12 133851895 + 115474488 115474854 MSTA 426 - 22 426 104118 87 1 21 49 1 0 7 3 0 32 2 0 71 5 29 108 chain 7818 chr12 133851895 + 115493980 115494370 L1MA6 2487 - 95 415 172198 14 20 16 23 243 177 90 chain 28023 chr12 133851895 + 115525205 115525580 L1PA8 5853 - 0 368 92923 93 1 0 19 2 1 42 22 20 70 2 0 44 1 0 79 chain 22179 chr12 133851895 + 115529364 115529704 THE1D 372 + 0 333 119443 13 0 2 26 12 0 66 0 1 58 31 34 56 1 0 77 chain 19371 chr12 133851895 + 115529710 115530008 AluSc 308 - 9 298 129018 20 12 5 61 10 8 79 2 0 69 8 10 37 chain 182532 chr12 133851895 + 115536920 115539092 L1PA7 6471 + 4297 6468 20735 371 0 4 72 12 0 54 0 1 795 0 5 22 1 0 230 3 2 600 1 4 11 chain 24834 chr12 133851895 + 115543797 115544092 AluSp 311 - 11 306 105701 295 chain 13506 chr12 133851895 + 115552783 115552949 Tigger3a 397 + 139 305 146348 166 chain 25885 chr12 133851895 + 115556370 115556742 THE1C 375 - 4 364 100504 21 1 0 146 7 10 4 1 0 13 15 4 53 2 0 109 chain 13467 chr12 133851895 + 115568839 115569118 L1PB1 5432 - 12 271 146462 11 0 1 4 2 1 12 1 0 21 1 0 24 11 9 5 1 0 5 2 0 30 13 1 15 1 0 45 14 16 53 2 0 6 chain 6329 chr12 133851895 + 115579376 115579452 MER121 330 + 134 210 182558 76 chain 27369 chr12 133851895 + 115581812 115582130 L1PA8A 6298 + 5964 6282 95051 318 chain 6673 chr12 133851895 + 115586668 115586894 L1MA6 2487 - 85 250 179879 4 1 0 23 6 4 30 106 50 14 2 0 40 chain 19893 chr12 133851895 + 115647988 115648357 THE1C 375 + 0 375 127508 58 29 30 20 16 36 10 23 7 18 7 8 45 0 1 117 1 0 25 chain 25541 chr12 133851895 + 115684492 115684784 AluY 311 + 18 311 102044 115 0 1 177 chain 2984 chr12 133851895 + 115692491 115692543 MER58D 378 - 14 63 225380 12 8 5 32 chain 18040 chr12 133851895 + 115708997 115709353 THE1B 368 - 0 362 132759 49 14 13 66 0 8 14 43 41 38 22 20 5 0 3 28 11 11 66 chain 16505 chr12 133851895 + 115713285 115713642 L1PB1 5432 + 5114 5430 136903 24 8 6 12 2 0 3 2 0 9 2 0 53 8 0 15 1 0 43 2 1 12 28 16 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 4 1 0 4 1 0 4 chain 548228 chr12 133851895 + 115722929 115728951 L1PA3long 6157 + 0 6156 1676 152 8 9 620 0 128 258 9 12 4970 0 2 5 chain 17826 chr12 133851895 + 115742580 115742857 L1PB2 3958 - 120 393 133313 63 1 0 26 19 17 37 1 2 14 1 0 61 1 0 53 chain 53007 chr12 133851895 + 115756565 115757177 L1PA7 6471 + 5839 6453 57012 125 0 2 487 chain 28242 chr12 133851895 + 115765340 115765734 THE1C 375 - 0 375 92141 26 1 0 60 12 0 91 20 12 5 0 2 179 chain 37816 chr12 133851895 + 115777731 115778229 L1PA8 5853 - 0 509 72390 93 1 0 13 1 0 3 1 0 56 1 0 9 2 1 70 2 0 7 1 2 4 1 0 33 0 15 189 0 3 11 chain 7630 chr12 133851895 + 115779165 115779260 L1PA7 6471 - 1 93 173351 11 3 0 81 chain 3912 chr12 133851895 + 115790581 115790625 L1MA8 2339 - 581 625 208662 44 chain 130217 chr12 133851895 + 115803998 115805577 THE1A-int 1579 + 0 1579 28042 397 0 1 463 0 1 128 2 0 589 chain 3944 chr12 133851895 + 115824633 115824676 MER3 215 + 167 210 208206 43 chain 3594 chr12 133851895 + 115841835 115841876 MLT1G3 592 + 275 316 213763 41 chain 43395 chr12 133851895 + 115847824 115848372 MLT2A2 560 + 0 560 64944 180 1 0 178 0 1 47 0 11 8 0 1 134 chain 3196 chr12 133851895 + 115870527 115870661 MIR 256 + 68 201 221004 26 80 79 28 chain 10653 chr12 133851895 + 115871560 115871777 MER30 238 - 2 238 157595 82 79 98 56 chain 32435 chr12 133851895 + 115879068 115879511 MLT2A1 477 + 0 458 80143 46 1 0 20 1 0 103 4 1 223 12 0 12 4 36 17 chain 12889 chr12 133851895 + 115896237 115896411 L1PB4 2604 - 38 217 148675 14 1 0 60 1 7 98 chain 12922 chr12 133851895 + 115900816 115901007 MER20 218 + 23 213 148544 57 1 6 7 7 0 63 1 2 55 chain 14590 chr12 133851895 + 115914585 115914932 L1PB1 5432 - 5 318 142627 4 1 0 5 1 0 14 1 0 13 5 4 16 6 5 20 2 0 15 1 0 4 9 7 23 14 1 16 4 3 40 1 0 16 2 1 53 17 11 9 1 0 6 4 3 24 chain 15903 chr12 133851895 + 115915354 115915643 L1PA15 4387 + 4070 4341 138643 24 11 10 26 1 0 55 1 0 23 4 0 9 9 8 42 6 3 44 3 1 14 5 0 12 chain 22934 chr12 133851895 + 115915752 115916028 AluY 311 + 18 295 115935 125 0 1 151 chain 25673 chr12 133851895 + 115918008 115918323 AluY 311 + 3 309 101395 62 0 2 59 11 0 183 chain 15499 chr12 133851895 + 115935559 115936288 L1MB3 1562 - 55 464 139898 32 131 107 17 1 0 6 0 1 6 1 0 30 12 13 36 0 1 51 1 8 15 330 26 60 chain 43666 chr12 133851895 + 115943978 115944529 MER41A 554 + 0 547 64608 68 6 5 20 0 1 369 4 0 84 chain 25808 chr12 133851895 + 115953675 115954025 THE1B 368 - 0 354 100839 131 10 9 14 1 5 15 0 2 23 1 0 155 chain 4466 chr12 133851895 + 115964845 115964897 MADE1 96 - 2 54 201159 52 chain 4290 chr12 133851895 + 115987486 115987553 MLT1F2 592 + 96 164 203355 49 5 6 13 chain 11919 chr12 133851895 + 116005239 116005458 Tigger2b_Pri 1066 - 0 225 152523 21 30 41 64 24 19 80 chain 6701 chr12 133851895 + 116014743 116014822 MIR 256 - 119 198 179675 79 chain 3444 chr12 133851895 + 116035677 116035715 MER58A 224 - 141 179 216300 38 chain 3469 chr12 133851895 + 116057890 116057958 MLT1J2 417 - 291 358 215835 18 18 17 32 chain 34743 chr12 133851895 + 116075736 116076179 MLT2A2 560 - 10 560 76555 44 0 1 4 1 0 88 2 111 122 2 0 180 chain 6972 chr12 133851895 + 116092991 116093074 L1PA7 6471 + 6384 6465 177671 75 2 0 6 chain 3610 chr12 133851895 + 116101176 116101235 MER53 195 + 8 68 213483 25 4 5 30 chain 17599 chr12 133851895 + 116101900 116102123 L1MB1 2102 + 1195 1419 133999 82 0 1 141 chain 17870 chr12 133851895 + 116105995 116106198 L1PA4 6152 - 0 205 133197 6 0 2 197 chain 87842 chr12 133851895 + 116106198 116107173 L1P1 4361 + 2306 3281 40430 528 0 2 320 2 0 125 chain 70400 chr12 133851895 + 116116588 116117462 THE1A-int 1579 + 697 1574 48214 507 1 0 46 1 0 243 0 5 76 chain 26868 chr12 133851895 + 116117467 116117822 THE1A 353 + 0 353 96749 102 9 8 92 1 0 151 chain 36483 chr12 133851895 + 116139649 116140081 L1PA5 6144 + 5704 6136 74259 432 chain 4121 chr12 133851895 + 116171547 116171672 MER3 215 - 8 161 205634 26 65 93 34 chain 2783 chr12 133851895 + 116172972 116173129 Tigger3 1187 - 87 240 145418 12 7 5 103 5 3 30 chain 33452 chr12 133851895 + 116173283 116173672 L1PA7 6471 + 6076 6467 78483 85 0 1 198 0 1 106 chain 886 chr12 133851895 + 116173698 116173748 Tigger3 1187 - 281 331 145418 50 chain 17166 chr12 133851895 + 116221450 116221718 THE1D 372 - 12 286 135121 133 1 0 18 37 43 5 0 1 74 chain 39325 chr12 133851895 + 116224127 116224588 L1PA5 6144 - 0 459 70290 259 2 0 200 chain 22827 chr12 133851895 + 116245944 116246195 L1PA5 6144 + 5880 6131 116460 251 chain 5880 chr12 133851895 + 116270282 116270636 MLT1A 405 - 23 405 186370 35 17 12 41 241 274 20 chain 9669 chr12 133851895 + 116292013 116292195 L1PA15 4387 + 3937 4104 162250 52 3 0 5 0 3 16 39 24 67 chain 35645 chr12 133851895 + 116303956 116304360 L1PA4 6152 - 6 407 75344 222 3 0 179 chain 26527 chr12 133851895 + 116313975 116314276 L1PA7 6471 + 6169 6469 97943 145 1 0 155 chain 3111 chr12 133851895 + 116324478 116324514 LTR33 499 - 6 42 222718 36 chain 17528 chr12 133851895 + 116344327 116345301 L1PB1 5432 + 5106 5427 134185 8 1 0 24 1 0 8 1 0 12 5 1 9 2 0 9 0 2 40 1 0 17 1 0 44 624 0 16 14 1 18 0 2 10 2 0 4 1 0 13 2 0 26 1 0 10 0 1 6 5 4 13 1 0 18 2 0 5 chain 19933 chr12 133851895 + 116356529 116356824 THE1D 372 - 18 327 127355 152 1 5 11 4 0 9 8 10 4 0 1 57 0 1 21 1 11 27 chain 3113 chr12 133851895 + 116372898 116372934 MER58A 224 - 141 177 222691 36 chain 2990 chr12 133851895 + 116381297 116381333 MIRb 242 - 108 144 225229 36 chain 24593 chr12 133851895 + 116573708 116574005 AluSg7 307 - 11 307 107028 17 7 5 147 0 1 126 chain 8095 chr12 133851895 + 116583811 116583917 MER30 238 + 0 104 170515 99 2 0 5 chain 23664 chr12 133851895 + 116631972 116632259 AluSp 311 - 14 301 112227 287 chain 23139 chr12 133851895 + 116657618 116657892 AluSg7 307 - 25 299 114944 150 0 1 78 1 0 45 chain 9326 chr12 133851895 + 116681078 116681205 MER85 139 - 0 139 163912 29 2 14 96 chain 24082 chr12 133851895 + 116709130 116709450 AluY 311 + 17 302 109856 109 3 0 79 32 0 97 chain 100047 chr12 133851895 + 116764643 116766547 L1PA15 4387 + 2817 4366 36764 243 0 6 18 314 0 52 39 41 17 12 3 11 4 5 149 11 10 105 2 0 81 2 1 161 1 0 93 0 2 13 12 7 5 1 0 50 2 0 10 1 0 6 0 10 17 1 0 37 0 1 7 0 1 107 20 19 26 1 0 52 1 0 24 36 10 50 6 3 44 3 1 14 5 0 27 1 0 10 chain 24553 chr12 133851895 + 116779317 116779613 AluSp 311 - 14 309 107231 41 5 4 250 chain 38359 chr12 133851895 + 116855555 116856180 MER41A 554 + 0 554 71632 93 0 1 259 0 1 15 132 54 43 0 5 83 chain 3770 chr12 133851895 + 116859172 116859214 MER63A 208 - 44 86 210822 42 chain 40305 chr12 133851895 + 116866160 116866700 MER41A 554 + 0 554 68871 109 12 13 97 0 2 172 5 7 31 2 0 7 1 10 53 1 3 50 chain 10224 chr12 133851895 + 116868124 116868239 L1PA5 6144 + 6017 6132 159491 115 chain 3624 chr12 133851895 + 116873961 116874057 MIR 256 - 118 234 213252 36 39 58 4 0 1 17 chain 24795 chr12 133851895 + 116888677 116888975 AluSp 311 - 3 302 105918 188 0 1 110 chain 3713 chr12 133851895 + 116889396 116889462 MER58A 224 + 50 115 211747 28 15 14 23 chain 34678 chr12 133851895 + 116916176 116916619 LOR1a 498 - 40 498 76655 173 1 12 13 0 3 209 0 1 47 chain 3002 chr12 133851895 + 116921515 116921547 L1MB7 1623 - 200 232 224991 32 chain 18223 chr12 133851895 + 116928625 116928951 THE1B 368 - 30 368 132276 26 7 6 39 0 9 9 59 64 16 1 0 145 1 2 4 1 0 18 chain 22661 chr12 133851895 + 116949678 116950349 THE1B 368 - 1 361 117268 58 320 0 56 45 55 29 1 0 162 chain 42578 chr12 133851895 + 116993854 116994385 MER41A 554 - 0 554 65929 81 0 5 282 7 8 93 0 1 13 1 17 54 chain 24938 chr12 133851895 + 117003007 117003386 THE1B 368 - 0 368 105122 175 24 16 27 8 4 29 4 6 63 0 1 34 2 0 13 chain 5190 chr12 133851895 + 117008584 117008645 MER47A 366 + 246 307 193148 61 chain 13954 chr12 133851895 + 117022188 117022548 MSTA 426 + 27 414 144734 30 29 37 19 1 19 16 51 53 12 3 0 13 0 21 8 46 25 48 0 2 84 chain 22791 chr12 133851895 + 117046019 117046309 AluSc 308 + 9 301 116626 20 0 1 106 5 6 159 chain 16068 chr12 133851895 + 117084576 117084779 MER41A 554 - 0 214 138156 131 0 11 72 chain 5729 chr12 133851895 + 117087021 117087092 L1MB5 1630 + 1179 1250 187848 71 chain 24668 chr12 133851895 + 117088652 117089005 THE1B 368 + 0 368 106623 169 1 0 22 17 23 10 3 13 7 1 0 66 1 2 56 chain 95385 chr12 133851895 + 117098348 117099725 LTR12C 1709 + 0 1709 37988 24 5 6 256 9 10 42 12 55 216 4 5 36 0 278 184 1 0 5 3 1 32 0 3 62 44 13 117 0 29 34 0 4 27 12 8 60 0 4 59 4 11 37 15 14 77 chain 6479 chr12 133851895 + 117105797 117105872 MER57B1 401 + 9 84 181405 75 chain 2855 chr12 133851895 + 117116498 117116556 L1MA4 2864 - 33 83 227763 14 16 8 28 chain 5750 chr12 133851895 + 117150911 117151034 MER20 218 - 92 218 187634 13 43 45 54 0 1 13 chain 386763 chr12 133851895 + 117191957 117197570 L1PB1 5432 - 151 5373 10556 44 1 0 16 2 1 51 2 0 11 16 11 9 1 0 23 32 12 50 9 9 139 1 0 198 0 2 84 3 0 426 4 14 69 588 0 82 0 1 73 1 0 218 11 0 6 1 0 111 13 264 64 0 1 404 0 3 43 1 0 229 11 12 101 0 1 893 0 5 198 16 1 7 1 0 17 0 1 115 18 0 27 1 2 372 8 11 442 1 2 4 1 0 149 1 0 194 chain 51852 chr12 133851895 + 117200984 117202150 L1PB1 5432 + 4621 5427 57719 201 12 20 73 337 0 186 7 8 5 1 0 24 1 0 9 1 0 10 6 2 8 2 0 40 0 1 4 11 7 18 1 0 44 1 0 15 3 0 2 10 0 29 2 0 4 1 0 14 3 1 24 1 0 22 1 0 7 1 5 18 2 0 5 chain 23569 chr12 133851895 + 117201295 117201593 AluY 311 + 4 292 112743 119 13 3 166 chain 23323 chr12 133851895 + 117202423 117202702 AluSq 315 + 9 290 114073 124 0 2 155 chain 19535 chr12 133851895 + 117207157 117207530 Tigger3b 1229 + 338 765 128554 26 7 18 118 46 73 50 1 5 22 5 11 33 18 24 47 chain 5045 chr12 133851895 + 117216678 117216748 MSTB2 466 + 398 466 194678 58 2 0 10 chain 7856 chr12 133851895 + 117219916 117220013 U6 107 + 7 107 171958 40 0 3 57 chain 3787 chr12 133851895 + 117265384 117265436 MER58A 224 + 42 91 210565 5 3 0 44 chain 5346 chr12 133851895 + 117328123 117328188 MER58A 224 + 151 216 191587 65 chain 7662 chr12 133851895 + 117339583 117339762 L1MB8 1703 + 1400 1579 173150 23 68 68 88 chain 5341 chr12 133851895 + 117340160 117340243 MER53 195 + 2 87 191634 61 10 12 12 chain 18778 chr12 133851895 + 117347914 117348296 L1PB1 5432 - 15 356 130742 13 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 42 20 41 5 4 11 2 1 53 2 0 8 6 2 9 2 1 13 2 0 19 7 0 7 0 7 25 chain 4476 chr12 133851895 + 117422818 117422896 Tigger4b 360 + 171 250 201057 49 13 14 16 chain 20618 chr12 133851895 + 117424211 117424453 AluY 311 + 60 302 125229 72 0 1 106 0 2 54 3 0 7 chain 61736 chr12 133851895 + 117430604 117431793 L1PB3 3668 - 190 1070 52019 32 0 1 54 0 1 4 2 0 91 5 4 100 314 0 37 1 2 154 12 2 9 2 0 147 0 6 127 5 17 23 1 0 69 chain 12197 chr12 133851895 + 117431811 117431973 L1PB3 3668 + 2337 2499 151434 29 0 1 119 2 1 12 chain 15343 chr12 133851895 + 117561480 117561827 THE1B 368 + 0 368 140360 45 71 82 42 1 0 29 9 16 10 22 20 63 11 16 32 0 1 12 chain 25940 chr12 133851895 + 117624954 117625251 AluSp 311 + 11 308 100248 297 chain 6531 chr12 133851895 + 117636163 117636251 MER39B 650 + 562 650 181003 36 1 0 36 0 1 15 chain 82787 chr12 133851895 + 117686004 117686918 L1PA3long 6157 - 1 916 42422 829 1 2 84 chain 11458 chr12 133851895 + 117692794 117692917 L1PA3long 6157 + 6034 6157 154475 123 chain 21748 chr12 133851895 + 117703936 117704330 L1PB1 5432 - 10 453 121213 18 2 1 12 1 0 21 1 0 24 2 0 14 8 5 30 12 1 15 1 0 46 1 0 14 2 1 52 2 0 9 21 95 13 1 0 72 chain 24617 chr12 133851895 + 117707265 117707570 AluSc 308 - 4 308 106901 131 2 1 172 chain 6984 chr12 133851895 + 117712636 117712720 L1MA5A 2387 + 1946 2031 177585 80 0 1 4 chain 6432 chr12 133851895 + 117727228 117727314 LTR19B 566 - 20 108 181766 53 1 3 32 chain 4367 chr12 133851895 + 117755220 117755275 MER20 218 - 78 132 202361 9 1 0 45 chain 5892 chr12 133851895 + 117774353 117774432 L1PB1 5432 + 5346 5422 186253 27 1 0 18 1 0 13 1 0 18 chain 20157 chr12 133851895 + 117776206 117776428 L1PA3long 6157 + 5928 6157 126654 84 0 7 138 chain 19572 chr12 133851895 + 117836961 117837307 THE1B 368 - 0 368 128454 56 1 2 6 2 0 64 1 0 10 7 6 10 1 5 9 1 0 7 9 27 31 26 28 41 0 2 64 chain 3757 chr12 133851895 + 117849887 117849943 MER97a 834 + 754 807 211011 35 4 1 17 chain 29308 chr12 133851895 + 117856404 117856780 THE1C 375 + 0 375 87523 125 3 0 56 0 1 171 0 1 21 chain 10798 chr12 133851895 + 117863629 117863747 L1PA3long 6157 - 295 413 156999 118 chain 69495 chr12 133851895 + 117866250 117867004 L1PA3long 6157 + 5403 6157 48612 754 chain 5102 chr12 133851895 + 117881343 117881405 MER20 218 - 61 124 194061 22 0 1 40 chain 3035 chr12 133851895 + 117884063 117884097 Charlie18a 321 + 215 249 224305 34 chain 25597 chr12 133851895 + 117884665 117885013 THE1A 353 + 1 351 101744 44 1 0 36 3 5 24 1 0 72 0 1 9 0 2 4 1 0 153 chain 18416 chr12 133851895 + 117925724 117926080 THE1B 368 + 0 368 131728 47 32 39 25 5 6 52 1 0 29 52 57 113 chain 11427 chr12 133851895 + 117928652 117928983 L1MA8 2339 - 12 306 154576 27 38 34 9 5 0 22 3 1 39 11 2 5 0 3 25 53 34 7 3 0 32 4 6 48 chain 27987 chr12 133851895 + 117931499 117931850 THE1A 353 + 2 352 93049 106 3 2 242 chain 11393 chr12 133851895 + 117998453 117998825 MSTB 430 + 17 414 154727 30 63 65 14 82 87 56 43 61 84 chain 18402 chr12 133851895 + 118012170 118012497 THE1B 368 - 13 358 131781 43 7 6 61 50 68 58 2 0 5 6 9 95 chain 3021 chr12 133851895 + 118022777 118022850 MER20 218 + 5 77 224592 12 28 27 33 chain 29460 chr12 133851895 + 118033153 118033467 AluYb8 318 - 3 318 86795 196 0 1 118 chain 19896 chr12 133851895 + 118033935 118034229 THE1B 368 - 62 368 127498 64 10 18 10 0 4 10 9 10 21 1 0 169 chain 28602 chr12 133851895 + 118036166 118036584 L1PB2 3958 - 120 562 90723 63 1 0 22 2 0 32 1 22 20 6 5 57 1 0 77 2 1 88 5 14 41 chain 19069 chr12 133851895 + 118049580 118049915 L1MB3 1562 + 1249 1553 129906 103 1 0 69 1 0 4 34 8 5 2 0 86 17 16 13 chain 521894 chr12 133851895 + 118061039 118067139 L1PA6 6164 - 2 6164 4971 6 2 0 147 0 2 30 1 2 79 1 0 580 0 5 238 0 1 95 0 4 140 20 27 215 0 10 302 0 1 33 0 1 714 0 1 223 1 0 904 0 8 69 2 0 1126 5 11 364 0 17 240 1 0 48 0 2 278 0 2 170 0 1 66 chain 14676 chr12 133851895 + 118083730 118083977 MER2 342 - 10 255 142339 52 6 7 22 33 29 112 0 1 22 chain 30133 chr12 133851895 + 118087827 118088251 MLT2A1 477 + 0 477 84370 87 1 14 16 1 0 4 0 1 18 0 1 27 1 5 98 11 3 109 0 44 31 1 0 19 chain 463983 chr12 133851895 + 118088251 118094132 HERVL-int 5654 + 0 5554 8258 341 13 1 77 0 2 71 4 0 632 1 0 439 312 0 241 0 1 163 3 5 18 7 6 469 6 0 214 2 0 48 0 1 107 0 1 113 0 1 408 17 6 256 0 2 189 0 1 201 4 1 7 0 3 422 3 0 72 0 1 238 1 7 130 0 3 385 0 3 148 0 1 119 chain 12687 chr12 133851895 + 118089840 118090107 L1PB1 5432 + 5181 5424 149496 39 2 1 10 7 6 44 1 0 15 23 12 7 1 0 12 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 3475 chr12 133851895 + 118127877 118127914 MER58A 224 - 143 180 215739 37 chain 3401 chr12 133851895 + 118152373 118152413 MIRc 230 - 125 165 217056 40 chain 45513 chr12 133851895 + 118160116 118160656 MER41A 554 + 13 554 62487 129 0 1 411 chain 133207 chr12 133851895 + 118168290 118169856 SVA_B 1603 + 4 1600 27391 17 0 1 19 7 0 798 57 17 26 0 80 14 1 0 613 3 0 11 chain 19756 chr12 133851895 + 118174951 118175195 MER75B 242 + 1 242 127942 224 3 0 17 chain 25257 chr12 133851895 + 118177760 118178601 L1PB1 5432 - 14 433 103438 14 1 0 13 1 0 21 1 0 24 1 0 15 1 0 4 2 0 18 9 0 11 22 17 44 1 0 16 2 1 52 2 0 9 6 2 11 1 0 11 1 0 21 5 0 9 397 11 95 chain 4050 chr12 133851895 + 118181998 118182047 MIRb 242 + 94 143 206638 49 chain 167164 chr12 133851895 + 118183338 118185394 L1PA8 5853 + 3796 5843 22378 712 5 0 8 0 5 260 11 11 214 0 2 78 4 1 477 1 0 42 5 2 74 1 0 5 2 1 52 2 1 18 3 2 82 chain 20568 chr12 133851895 + 118188485 118188785 L1PA16 3655 - 77 375 125401 39 1 0 101 22 23 127 2 0 8 chain 25538 chr12 133851895 + 118188800 118189167 THE1C 375 + 7 375 102066 53 34 35 90 1 0 47 0 2 115 1 0 26 chain 40185 chr12 133851895 + 118200697 118201132 L1PA3long 6157 - 0 435 69056 435 chain 35503 chr12 133851895 + 118208915 118209365 MER4A1 472 + 0 472 75550 33 1 0 197 0 22 188 0 1 31 chain 15994 chr12 133851895 + 118213547 118213884 L1PB1 5432 + 5123 5427 138367 15 1 0 9 5 0 11 4 0 9 2 0 53 2 1 15 1 0 44 1 0 12 30 17 18 2 0 5 1 0 14 2 0 7 6 7 10 1 0 22 0 3 8 2 1 18 2 0 5 chain 6064 chr12 133851895 + 118217871 118217947 MER33 330 + 142 218 184711 76 chain 3015 chr12 133851895 + 118221213 118221247 MIRb 242 + 103 137 224725 34 chain 19701 chr12 133851895 + 118224616 118224848 AluSp 311 + 64 296 128093 232 chain 39880 chr12 133851895 + 118238401 118238916 L1PA8 5853 - 0 510 69485 93 1 0 19 2 1 39 2 1 5 0 1 5 1 0 7 1 0 72 2 0 48 1 0 40 0 3 137 2 0 34 0 1 4 chain 45091 chr12 133851895 + 118259637 118260188 MER41A 554 + 0 554 62946 87 3 6 461 chain 4259 chr12 133851895 + 118265571 118265669 MIR 256 - 89 196 203748 15 34 40 44 0 3 5 chain 3643 chr12 133851895 + 118286569 118286672 HAL1-2a_MD 234 - 3 216 212941 7 6 0 6 1 0 15 7 128 13 15 11 33 chain 22985 chr12 133851895 + 118317689 118317957 AluSp 311 + 20 288 115691 268 chain 12292 chr12 133851895 + 118340411 118340554 L1PA7 6471 + 6322 6465 151040 143 chain 6427 chr12 133851895 + 118366454 118366535 L1MB3 1562 - 443 524 181806 81 chain 18684 chr12 133851895 + 118367026 118367374 THE1B 368 + 0 368 130986 44 5 20 14 7 6 24 8 9 60 61 66 125 chain 5396 chr12 133851895 + 118380049 118380236 L1MA4 2864 - 60 208 191020 38 2 0 20 87 53 22 4 1 14 chain 4008 chr12 133851895 + 118386935 118386979 MADE1 96 - 52 96 207263 44 chain 3894 chr12 133851895 + 118396753 118396795 L1MA4 2864 + 2766 2808 208943 42 chain 3701 chr12 133851895 + 118402098 118402155 MER103C 291 - 123 175 211931 5 3 0 23 2 0 24 chain 4287 chr12 133851895 + 118410474 118410526 MLT1B 390 - 16 75 203378 17 0 7 35 chain 29225 chr12 133851895 + 118421558 118421867 AluYa5 310 - 1 310 87934 309 chain 6524 chr12 133851895 + 118424041 118424137 MLT1A0 366 + 85 189 181062 11 0 1 20 10 17 55 chain 25364 chr12 133851895 + 118452145 118452504 THE1D 372 - 0 372 102864 179 4 3 14 7 11 85 8 18 62 chain 3039 chr12 133851895 + 118456131 118456168 MER20 218 - 0 38 224212 8 0 1 29 chain 24647 chr12 133851895 + 118482899 118483184 AluYc3 301 + 0 286 106740 113 1 2 171 chain 19683 chr12 133851895 + 118522556 118522823 AluY 311 + 20 282 128149 15 36 30 67 0 1 149 chain 73915 chr12 133851895 + 118543788 118544748 LTR5_Hs 974 + 0 974 46557 115 5 13 41 1 0 116 0 1 114 0 1 66 0 1 188 1 0 163 8 15 19 20 18 103 chain 21669 chr12 133851895 + 118549785 118550086 AluSc 308 - 7 308 121503 19 4 0 8 7 10 25 7 8 231 chain 23380 chr12 133851895 + 118553334 118553618 AluSp 311 + 10 300 113759 36 9 15 239 chain 5276 chr12 133851895 + 118556430 118556495 LTR8 732 + 667 732 192244 65 chain 3380 chr12 133851895 + 118558138 118558199 MER84 505 - 346 409 217477 14 5 8 6 1 0 35 chain 23531 chr12 133851895 + 118561701 118561986 AluSp 311 - 16 301 112955 285 chain 131969 chr12 133851895 + 118566239 118567763 L1PA6 6164 + 4596 6159 27640 567 0 5 139 7 8 238 0 16 283 0 9 34 4 5 110 0 7 142 chain 22884 chr12 133851895 + 118573041 118573326 AluY 311 + 0 302 116167 47 0 16 69 0 1 126 5 3 5 0 2 33 chain 14144 chr12 133851895 + 118586849 118587047 MER107 203 + 0 203 144056 25 1 0 121 1 6 14 4 5 32 chain 13253 chr12 133851895 + 118617260 118617415 L1PA5 6144 + 5991 6142 147274 144 4 0 7 chain 26663 chr12 133851895 + 118660863 118661163 AluYc3 301 - 1 301 97444 300 chain 44254 chr12 133851895 + 118670729 118671218 L1PA4 6152 + 5663 6152 63874 489 chain 24128 chr12 133851895 + 118703991 118704306 AluSp 311 - 5 311 109595 66 0 1 107 10 0 132 chain 121941 chr12 133851895 + 118716249 118719142 L1PA15 4387 - 31 1857 30398 27 8 2 12 3 1 44 6 3 50 1 0 12 4 0 20 1 0 55 1 0 12 0 4 10 1 0 53 343 58 60 1 0 40 8 6 75 3 5 22 6 0 50 1 5 45 5 14 21 3 1 132 781 0 233 7 12 13 9 2 89 5 4 343 0 2 190 4 14 30 2 3 52 chain 24806 chr12 133851895 + 118723154 118723447 AluSq10 312 - 9 302 105860 191 0 1 4 1 0 97 chain 36495 chr12 133851895 + 118723495 118723966 MER4A1 472 - 0 472 74244 128 0 2 98 15 14 230 chain 58832 chr12 133851895 + 118724097 118725006 L1PB1 5432 + 4535 5417 53499 91 3 0 54 3 5 73 11 10 36 0 2 6 1 4 185 0 1 101 1 2 9 3 0 10 0 1 13 1 0 8 1 0 10 6 2 11 3 1 42 10 9 15 1 0 44 1 0 16 1 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 13 chain 31622 chr12 133851895 + 118745829 118746212 MER41A 554 + 84 466 81449 307 6 5 70 chain 11923 chr12 133851895 + 118777080 118777212 AluSp 311 - 3 135 152500 132 chain 23302 chr12 133851895 + 118792364 118792719 THE1B 368 + 6 368 114188 101 2 3 27 1 7 25 4 3 26 2 1 108 23 25 36 chain 15802 chr12 133851895 + 118800020 118800266 MER30 238 - 1 238 138950 33 11 8 77 22 16 103 chain 23781 chr12 133851895 + 118816483 118816768 AluSp 311 - 15 300 111590 145 3 0 7 0 3 130 chain 25460 chr12 133851895 + 118870274 118870573 AluY 311 + 0 295 102412 123 1 0 6 3 0 166 chain 17274 chr12 133851895 + 118873145 118873513 THE1B 368 - 0 368 134855 56 1 2 61 17 25 10 0 4 10 1 0 5 18 11 6 0 2 52 67 64 48 4 0 12 chain 6330 chr12 133851895 + 118893611 118893765 MER33 330 - 5 162 182539 21 4 12 43 16 14 20 16 18 13 5 0 16 chain 3685 chr12 133851895 + 118894616 118894757 MER112 246 - 68 210 212163 16 85 86 40 chain 9252 chr12 133851895 + 118901955 118902070 MLT2B1 522 + 0 115 164300 115 chain 14324 chr12 133851895 + 118902122 118902460 L1PB1 5432 - 10 318 143480 18 1 0 12 2 1 21 1 0 6 40 38 17 19 7 8 2 0 13 1 0 45 1 0 15 2 1 52 18 12 12 1 0 6 1 0 24 chain 23518 chr12 133851895 + 118912338 118912623 AluSp 311 + 8 294 113029 55 0 1 230 chain 42489 chr12 133851895 + 118916414 118916955 MER41A 554 - 8 554 66027 73 0 5 36 2 1 43 0 1 387 chain 21189 chr12 133851895 + 118917708 118917988 LTR8 732 + 31 312 123242 9 6 0 117 0 6 142 0 1 6 chain 4247 chr12 133851895 + 118927978 118928029 LTR8 732 + 681 732 203901 51 chain 45188 chr12 133851895 + 118929336 118929887 MER41A 554 - 0 554 62837 33 1 3 144 0 1 34 1 0 250 0 1 88 chain 15654 chr12 133851895 + 118948224 118948517 THE1B 368 - 68 368 139418 57 1 0 13 1 0 16 9 16 22 9 10 52 8 9 10 31 31 64 chain 21768 chr12 133851895 + 118956042 118956450 MSTA 426 - 18 418 121142 90 10 18 58 8 6 17 45 36 32 1 8 13 2 0 60 1 0 21 17 8 33 chain 65382 chr12 133851895 + 118960085 118960826 L1PA6 6164 - 2 743 50386 741 chain 72914 chr12 133851895 + 118968896 118969707 L1PA4 6152 + 5340 6152 47060 668 0 1 143 chain 47512 chr12 133851895 + 118985345 118985929 L1PA7 6471 + 5883 6468 60833 84 2 0 378 0 1 110 0 2 10 chain 8717 chr12 133851895 + 118991923 118992080 MER70A 477 + 316 477 167104 91 6 9 20 20 21 20 chain 38205 chr12 133851895 + 119008700 119009205 MER9a3 513 + 0 513 71832 18 0 2 7 0 3 33 3 0 73 0 1 119 5 4 53 0 4 95 1 2 20 0 1 78 chain 17013 chr12 133851895 + 119021566 119021784 L1PA8A 6298 - 9 236 135559 74 1 10 143 chain 4903 chr12 133851895 + 119026111 119026174 MIRb 242 + 69 132 196246 63 chain 131655 chr12 133851895 + 119034021 119035545 LTR12C 1709 - 0 1709 27708 356 0 7 118 0 4 106 3 1 9 1 0 150 0 176 345 0 1 436 chain 19679 chr12 133851895 + 119037769 119038122 THE1D 372 - 0 372 128172 60 0 1 4 1 0 73 0 6 31 65 68 31 19 29 69 chain 26639 chr12 133851895 + 119052652 119052957 AluYk4 311 + 0 305 97517 305 chain 43305 chr12 133851895 + 119055047 119055591 MLT2A2 560 + 0 560 65043 25 0 1 154 1 0 179 0 1 46 11 22 122 0 4 6 chain 34387 chr12 133851895 + 119095299 119095682 L1PA4 6152 - 1 384 77083 383 chain 535131 chr12 133851895 + 119095697 119101829 L1PA3long 6157 - 0 6153 3578 843 0 4 847 0 3 939 2 1 26 0 1 694 0 1 232 8 0 1827 6 0 22 0 7 135 0 1 446 0 19 105 chain 528366 chr12 133851895 + 119106391 119112535 L1PA6 6164 - 5 6163 4368 707 1 4 126 0 4 403 1 3 1479 1 2 645 0 1 407 1 0 50 1 0 370 1 0 239 0 1 532 0 1 687 0 1 30 1 0 339 17 21 106 chain 32793 chr12 133851895 + 119115276 119115638 L1PA4 6152 - 12 375 79545 136 0 1 226 chain 2803 chr12 133851895 + 119145771 119145815 HAL1-2a_MD 234 - 199 234 228695 19 9 0 16 chain 29287 chr12 133851895 + 119157673 119158083 MSTA 426 + 0 411 87631 132 1 0 4 17 20 50 7 6 199 chain 45165 chr12 133851895 + 119186671 119187222 MER41A 554 - 0 554 62860 145 1 3 313 0 1 92 chain 28695 chr12 133851895 + 119217631 119217963 L1PA5 6144 + 5802 6134 90348 332 chain 472244 chr12 133851895 + 119230923 119236683 L1PA8 5853 - 0 5745 7965 93 1 0 19 2 1 47 1 0 12 1 0 73 2 0 44 1 0 47 0 2 290 0 3 74 1 12 127 5 4 21 1 0 259 1 0 161 9 4 190 1 0 696 2 0 480 3 7 20 25 0 203 0 3 79 1 0 169 0 1 162 3 4 61 0 4 1334 0 1 134 0 1 286 0 3 238 0 1 175 18 12 188 chain 71583 chr12 133851895 + 119245163 119246223 L1MA1 4479 - 328 2365 47666 9 1 0 35 3 1 28 1 0 38 0 1 87 9 5 76 27 26 19 1 0 71 1 0 16 16 21 4 1 0 161 0 11 28 2 0 15 7 973 105 9 10 103 0 5 96 0 1 38 0 1 53 chain 18958 chr12 133851895 + 119248948 119249208 AluSq2 311 + 38 290 130208 96 30 22 134 chain 29121 chr12 133851895 + 119262357 119262671 AluYb8 318 + 0 309 88452 126 5 0 183 chain 92100 chr12 133851895 + 119333233 119334667 L1PA15 4387 + 2942 4366 38939 64 0 1 18 0 4 137 7 6 95 5 13 85 3 17 48 0 1 342 0 1 39 3 1 15 4 0 62 3 1 41 1 0 75 9 0 96 61 59 21 2 1 12 9 5 14 2 1 40 16 13 41 7 4 14 5 0 27 1 0 10 chain 214864 chr12 133851895 + 119340776 119343245 L1PA6 6164 - 3 2479 18176 375 0 1 513 0 1 42 0 1 155 0 1 700 0 4 581 1 0 102 chain 3313 chr12 133851895 + 119389730 119389768 LTR79 453 - 72 110 218720 38 chain 25415 chr12 133851895 + 119392654 119392990 LTR45B 484 - 156 484 102616 275 7 0 4 1 0 49 chain 266888 chr12 133851895 + 119403838 119407019 L1PA7 6471 - 3 3194 15341 9 2 0 64 1 0 131 2 0 20 0 1 626 0 3 637 1 0 218 0 10 73 0 2 95 0 1 4 1 0 190 0 1 5 1 0 376 2 0 415 0 2 308 chain 23429 chr12 133851895 + 119463233 119463537 AluSp 311 - 18 300 113481 9 22 0 273 chain 27901 chr12 133851895 + 119478027 119478538 L1PB1 5432 - 12 495 93364 16 1 0 13 1 0 21 1 0 24 2 0 14 46 32 4 1 0 16 1 0 43 1 0 16 2 1 50 3 1 11 16 11 9 1 0 23 5 0 8 1 4 25 4 9 132 chain 533026 chr12 133851895 + 119542629 119548758 L1PA5 6144 - 3 6144 3848 847 1 0 258 0 12 198 0 1 1075 9 1 55 1 0 341 0 1 198 0 4 835 7 2 174 1 0 502 0 1 63 0 3 399 9 0 122 0 1 914 0 14 120 chain 44888 chr12 133851895 + 119564528 119565023 L1PA3long 6157 + 5661 6156 63191 495 chain 24162 chr12 133851895 + 119605243 119605530 AluSp 311 + 4 299 109416 136 3 11 148 chain 29146 chr12 133851895 + 119609414 119609880 MER4A1 472 - 0 472 88336 68 24 34 95 29 8 21 6 27 89 12 8 122 chain 3004 chr12 133851895 + 119613388 119613422 MIR 256 + 102 136 224959 34 chain 30305 chr12 133851895 + 119618943 119619393 MER4A1 472 - 0 472 83906 68 7 9 121 10 31 100 22 21 122 chain 21473 chr12 133851895 + 119627271 119627545 MER1B 344 - 5 303 122242 63 1 25 210 chain 84965 chr12 133851895 + 119656398 119657451 MER11B 1079 - 0 1079 41527 11 5 4 296 6 0 173 7 9 250 3 20 37 0 14 265 chain 24922 chr12 133851895 + 119659302 119659648 THE1B 368 - 5 368 105214 60 1 0 61 1 0 12 7 6 10 1 5 9 0 3 28 1 0 42 0 14 113 chain 3087 chr12 133851895 + 119661172 119661222 L1MC1 2226 + 1857 1901 223152 30 7 1 13 chain 3933 chr12 133851895 + 119666312 119666376 Tigger5 388 - 0 80 208373 12 8 24 44 chain 14091 chr12 133851895 + 119667385 119667616 MER30 238 + 0 229 144252 104 21 0 16 0 19 20 1 7 6 3 0 21 3 0 36 chain 25134 chr12 133851895 + 119708093 119708434 THE1B 368 - 12 366 104100 147 11 7 8 0 2 23 2 1 109 0 15 20 0 1 21 chain 19533 chr12 133851895 + 119727486 119727844 THE1C 375 - 12 375 128563 121 49 50 5 0 1 5 0 2 25 20 0 10 16 37 107 chain 33072 chr12 133851895 + 119742457 119742910 MER4A1 472 - 0 472 79094 139 0 1 37 3 0 47 5 26 188 2 1 8 2 1 8 0 2 14 chain 5648 chr12 133851895 + 119743062 119743192 MER21A 919 - 767 908 188585 28 52 63 50 chain 3985 chr12 133851895 + 119752263 119752307 MLT1K 546 + 142 186 207615 44 chain 29582 chr12 133851895 + 119773733 119774061 L1PA2 6032 + 5703 6028 86259 318 3 0 7 chain 23455 chr12 133851895 + 119789476 119789761 MSTA-int 1630 - 1344 1630 113351 271 0 1 14 chain 23810 chr12 133851895 + 119795263 119795549 AluSp 311 - 16 302 111417 286 chain 27710 chr12 133851895 + 119795596 119796024 MSTA 426 - 0 426 94000 163 33 37 13 26 16 33 0 4 27 1 0 111 0 1 21 chain 147784 chr12 133851895 + 119797341 119798997 SVA_D 2077 - 2 2077 24909 637 2 225 175 0 2 50 0 83 304 0 116 458 5 0 25 chain 2947 chr12 133851895 + 119811191 119811222 MIRc 230 + 90 121 226159 31 chain 6497 chr12 133851895 + 119869792 119869881 LTR8 732 - 460 666 181273 10 0 116 11 0 1 68 chain 4053 chr12 133851895 + 119873856 119873909 MLT1H 522 - 339 392 206596 53 chain 21301 chr12 133851895 + 119877716 119878022 L1PA8 5853 + 5539 5843 122856 25 1 0 18 0 4 22 2 0 70 2 1 14 1 0 8 1 2 41 1 0 16 2 1 82 chain 14919 chr12 133851895 + 119883543 119883858 L1PB1 5432 + 5115 5413 141578 23 1 0 9 1 0 8 8 4 10 3 0 4 0 1 43 7 6 8 0 11 38 1 0 16 22 12 19 8 5 14 2 0 26 1 0 19 1 0 13 1 0 9 chain 41719 chr12 133851895 + 119894309 119894842 MER41A 554 - 0 554 67002 128 3 23 356 7 8 39 chain 35744 chr12 133851895 + 119911271 119911886 L1PB1 5432 - 2 567 75206 4 1 0 4 1 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 9 2 0 12 9 0 15 4 0 16 2 1 43 18 16 51 19 13 12 8 6 23 5 0 10 18 7 233 chain 15258 chr12 133851895 + 119919426 119919714 L1PB1 5432 - 5 270 140608 5 2 0 18 1 0 14 0 3 17 1 0 24 24 19 30 14 1 15 1 0 60 2 1 51 2 0 7 chain 2816 chr12 133851895 + 119926119 119926154 DNA1_Mam 279 - 125 159 228524 16 1 0 18 chain 5805 chr12 133851895 + 119926879 119926972 MER63A 208 + 50 140 187095 51 12 9 30 chain 3364 chr12 133851895 + 119930476 119930519 MIRb 242 + 53 94 217781 14 2 0 27 chain 22630 chr12 133851895 + 119946019 119946296 AluSc 308 + 14 291 117422 277 chain 58516 chr12 133851895 + 119963259 119964257 L1PA14 3548 + 90 3438 53690 58 4 0 69 1 0 17 37 34 31 2 0 31 2 2385 55 0 3 120 6 4 34 10 8 14 2 0 47 12 8 94 20 17 12 2 0 5 1 0 5 0 1 79 1 0 111 14 9 38 4 2 12 1 0 5 1 0 17 1 0 23 chain 470596 chr12 133851895 + 119970243 119976352 L1PA7 6471 - 17 6466 8015 133 0 6 6 7 1 81 0 3 603 1 0 952 0 4 644 5 4 188 1 2 55 7 9 335 0 1 108 1 0 676 3 5 377 1 0 184 0 1 23 0 4 294 0 2 445 0 3 6 10 7 225 0 21 174 65 151 39 7 6 9 0 19 38 182 382 17 16 15 191 chain 126877 chr12 133851895 + 119976362 119977930 L1P3 4156 - 2562 4141 28841 626 0 3 253 0 8 252 9 10 34 1 0 88 2 1 67 2 1 98 14 16 122 chain 23544 chr12 133851895 + 120000870 120001165 AluSq4 311 + 0 297 112890 19 2 1 106 0 1 111 0 1 23 0 1 34 chain 7153 chr12 133851895 + 120023164 120023272 MER58A 224 - 67 187 176388 36 12 24 60 chain 22324 chr12 133851895 + 120029669 120029939 AluSg7 307 + 28 297 118805 103 0 1 151 2 0 14 chain 3101 chr12 133851895 + 120045141 120045173 tRNA-Ile-ATA 38 + 0 32 222918 32 chain 105840 chr12 133851895 + 120046762 120048254 THE1C-int 1605 + 17 1596 35299 93 0 54 51 0 6 108 0 6 110 3 10 37 9 10 185 0 5 11 0 1 21 31 26 23 15 15 218 5 6 101 17 16 22 25 26 151 0 13 173 0 1 40 3 0 40 chain 13545 chr12 133851895 + 120050770 120050923 L1PA6 6164 - 2 155 146188 153 chain 25782 chr12 133851895 + 120054469 120054838 THE1C 375 + 0 364 100952 35 1 0 144 0 2 5 28 23 141 1 0 14 chain 39814 chr12 133851895 + 120054849 120055357 THE1C-int 1605 + 0 520 69606 14 2 1 314 0 6 107 3 10 68 chain 4353 chr12 133851895 + 120066755 120066803 MER58A 224 - 160 208 202554 48 chain 18108 chr12 133851895 + 120085424 120085682 L1PA8 5853 - 0 251 132572 92 4 3 17 2 1 52 2 0 9 2 1 70 2 0 6 chain 24170 chr12 133851895 + 120089352 120089657 AluSc5 308 + 11 306 109376 115 10 0 180 chain 27151 chr12 133851895 + 120092837 120093150 AluYb8 318 - 10 318 95758 13 10 0 62 0 3 209 0 2 19 chain 4598 chr12 133851895 + 120094925 120094983 MER74B 573 + 257 315 199658 58 chain 5927 chr12 133851895 + 120109091 120109163 Tigger3a 397 - 30 102 185927 72 chain 10843 chr12 133851895 + 120133610 120133740 MER2 342 - 95 225 156813 130 chain 20412 chr12 133851895 + 120174891 120175140 AluY 311 + 61 311 125859 71 7 8 171 chain 5182 chr12 133851895 + 120185601 120185677 Charlie1a 1436 - 1287 1362 193216 43 5 4 28 chain 40113 chr12 133851895 + 120194002 120194588 MER51C 639 - 0 555 69163 37 0 11 116 0 1 220 4 0 8 36 0 18 20 17 127 chain 8481 chr12 133851895 + 120197485 120197600 MER1B 344 + 217 343 168400 56 1 12 58 chain 3048 chr12 133851895 + 120210777 120210815 L1PA8 5853 + 5815 5853 224027 38 chain 7888 chr12 133851895 + 120223690 120223789 MLT1D 503 + 404 503 171744 99 chain 9540 chr12 133851895 + 120237541 120237755 MER30 238 + 0 238 162883 23 0 1 4 2 0 17 58 80 28 1 7 39 3 0 39 chain 5653 chr12 133851895 + 120278138 120278206 MER5A 189 + 65 133 188534 68 chain 19873 chr12 133851895 + 120312489 120312720 AluYf5 307 + 81 307 127583 188 1 0 29 4 0 9 chain 25537 chr12 133851895 + 120318664 120319019 THE1B 368 + 0 368 102069 44 0 15 117 8 7 15 8 6 112 0 1 51 chain 30104 chr12 133851895 + 120327176 120327610 LTR2 463 - 0 463 84468 56 1 0 19 18 20 6 1 0 14 0 26 10 0 1 5 1 0 190 6 9 107 chain 13719 chr12 133851895 + 120330280 120330498 L1MB3 1562 - 137 363 145540 4 1 0 68 2 1 22 19 29 102 chain 48472 chr12 133851895 + 120336423 120336960 L1PA4 6152 - 9 545 60136 148 1 0 388 chain 13808 chr12 133851895 + 120336960 120337109 L1PA4 6152 + 5474 5623 145229 149 chain 10782 chr12 133851895 + 120350539 120350688 LTR24C 604 + 0 154 157067 29 11 16 109 chain 164759 chr12 133851895 + 120355603 120357518 SVA_F 1814 - 0 1804 22685 10 2 0 665 2 1 127 0 4 44 2 16 35 126 0 902 chain 9431 chr12 133851895 + 120356490 120356616 SVA_F 1814 - 711 838 126729 102 0 1 24 chain 27157 chr12 133851895 + 120372583 120372938 THE1A 353 + 0 353 95731 109 2 1 92 10 9 142 chain 25869 chr12 133851895 + 120377888 120378190 AluSc 308 - 6 308 100570 302 chain 16917 chr12 133851895 + 120381279 120381480 AluSp 311 + 93 294 135801 201 chain 5582 chr12 133851895 + 120382911 120382988 THE1B 368 + 230 306 189256 12 8 7 57 chain 14034 chr12 133851895 + 120398567 120398779 THE1B 368 + 154 368 144440 15 1 0 21 3 5 5 1 0 9 1 5 16 1 0 12 1 0 126 chain 47355 chr12 133851895 + 120424535 120425165 LTR10E 629 - 0 629 60934 6 1 0 55 15 13 251 11 10 128 0 2 148 1 0 4 0 2 10 chain 25775 chr12 133851895 + 120462853 120463153 AluYf4 310 - 13 310 100993 26 8 5 266 chain 86262 chr12 133851895 + 120482781 120483733 L1PA3long 6157 + 5201 6157 41054 103 0 4 849 chain 25182 chr12 133851895 + 120543450 120543744 AluY 311 + 5 306 103835 127 0 1 44 0 6 123 chain 25941 chr12 133851895 + 120573163 120573465 AluSp 311 - 7 310 100246 62 0 1 240 chain 18859 chr12 133851895 + 120643965 120644294 MER1B 344 - 0 342 130489 59 32 31 11 0 2 64 6 8 53 30 40 74 chain 7445 chr12 133851895 + 120646882 120647035 MER30 238 + 67 235 174476 36 12 0 8 5 30 12 1 7 38 13 9 28 chain 20748 chr12 133851895 + 120689346 120689624 AluSx1 309 + 8 287 124795 38 18 19 222 chain 118725 chr12 133851895 + 120715293 120716816 SVA_A 1864 - 1 1846 31521 152 8 1 433 6 3 29 2 0 80 0 221 31 2 0 26 1 0 15 0 113 52 1 4 36 0 5 10 3 0 35 3 0 38 7 6 72 9 6 32 0 2 38 0 3 402 chain 22451 chr12 133851895 + 120722963 120723236 AluSp 311 + 10 287 118241 83 0 3 156 0 1 34 chain 13305 chr12 133851895 + 120729562 120729706 U4 144 - 0 144 147062 144 chain 12734 chr12 133851895 + 120730896 120731040 U4 144 - 0 144 149310 144 chain 5020 chr12 133851895 + 120731662 120731748 L1MB3 1562 - 192 278 194925 18 1 0 12 9 10 46 chain 23371 chr12 133851895 + 120736748 120737028 AluY 311 + 1 287 113808 117 5 0 14 0 1 33 0 10 111 chain 17321 chr12 133851895 + 120747955 120748174 AluSx1 309 + 5 288 134730 47 10 74 162 chain 26445 chr12 133851895 + 120748879 120749187 AluSp 311 + 0 311 98249 91 0 3 217 chain 3899 chr12 133851895 + 120751098 120751144 U6 107 - 61 107 208858 46 chain 94805 chr12 133851895 + 120772754 120775696 THE1D-int 1627 - 9 1609 38141 139 0 1 216 1664 324 323 1 0 16 2 0 48 0 4 148 1 2 29 2 1 272 2 0 42 9 8 8 1 0 19 chain 84313 chr12 133851895 + 120773114 120774117 LTR13 1007 + 0 1007 41783 381 0 1 301 25 28 296 chain 16821 chr12 133851895 + 120774437 120774773 THE1B 368 - 0 368 136062 35 42 50 34 41 51 26 10 9 108 0 15 40 chain 5439 chr12 133851895 + 120775696 120775761 THE1B-int 1605 - 622 687 189032 65 chain 23987 chr12 133851895 + 120818871 120819167 AluY 311 + 0 302 110397 132 0 1 5 1 6 158 chain 21783 chr12 133851895 + 120895405 120895672 AluSp 311 - 8 274 121089 118 0 1 52 2 0 95 chain 25993 chr12 133851895 + 120897377 120897667 AluYf4 310 + 0 290 100044 290 chain 4506 chr12 133851895 + 120928741 120928829 MIRb 242 - 63 147 200711 19 23 19 46 chain 4521 chr12 133851895 + 120942375 120942460 HY4 93 - 0 91 200543 30 20 26 35 chain 6773 chr12 133851895 + 120943969 120944091 LTR54 533 + 2 118 179156 34 6 8 50 14 6 18 chain 22825 chr12 133851895 + 120966331 120966622 AluSq2 311 + 0 298 116473 93 0 9 32 1 0 141 9 8 15 chain 5486 chr12 133851895 + 121011792 121011898 MSTB1 431 - 290 397 190160 51 29 30 26 chain 45381 chr12 133851895 + 121044799 121045349 MLT2A2 560 + 0 560 62614 364 1 0 42 0 11 143 chain 438782 chr12 133851895 + 121045704 121051613 HERVL-int 5654 + 25 5654 9089 160 297 0 14 28 21 350 2 3 104 4 7 6 3 0 15 11 12 408 1 0 5 0 4 750 0 9 75 1 3 21 0 3 122 1 3 340 6 0 318 9 12 173 10 12 1211 0 1 180 11 15 363 0 8 465 2 0 76 0 1 5 7 8 37 16 11 73 4 0 81 1 0 4 18 19 121 chain 23512 chr12 133851895 + 121045868 121046151 AluSc 308 + 0 290 113060 14 0 6 197 0 1 72 chain 45722 chr12 133851895 + 121051613 121052162 MLT2A2 560 + 0 560 62292 402 0 11 147 chain 10492 chr12 133851895 + 121055785 121055917 THE1D 372 + 224 354 158279 58 1 0 58 1 0 14 chain 7375 chr12 133851895 + 121102708 121102935 L1MC1 2226 + 1896 2103 174937 18 1 0 9 17 12 20 40 37 56 21 15 13 12 7 20 chain 4407 chr12 133851895 + 121113931 121113993 MER3 215 - 0 59 201847 48 3 0 11 chain 20519 chr12 133851895 + 121123070 121123363 AluSc 308 + 10 304 125572 39 7 14 68 6 5 150 5 0 18 chain 137121 chr12 133851895 + 121169462 121171064 SVA_C 1631 - 23 1631 26614 572 0 45 112 0 26 125 36 0 41 40 0 659 0 11 17 chain 3182 chr12 133851895 + 121170271 121170307 SVA_C 1631 - 863 899 174614 36 chain 15833 chr12 133851895 + 121191171 121191415 AluSz6 309 - 55 299 138846 98 17 17 14 1 0 67 9 10 38 chain 24079 chr12 133851895 + 121230233 121230522 AluSc 308 + 11 302 109875 261 0 2 28 chain 68543 chr12 133851895 + 121276567 121277316 L1PA3long 6157 + 5403 6152 49015 749 chain 6085 chr12 133851895 + 121309581 121309677 MER2 342 - 94 190 184539 18 0 2 6 9 7 63 chain 4695 chr12 133851895 + 121319631 121319688 L1MB3 1562 + 1356 1413 198576 57 chain 21191 chr12 133851895 + 121331844 121332132 AluSp 311 + 0 287 123236 39 25 24 224 chain 3262 chr12 133851895 + 121381077 121381174 MLT1B 390 + 234 331 219757 11 4 5 13 17 16 21 1 0 13 5 6 12 chain 116448 chr12 133851895 + 121387244 121388711 LTR12C 1709 - 0 1709 32294 82 1 0 297 9 1 101 15 8 102 1 158 106 0 118 273 15 0 166 1 2 76 12 9 210 chain 3600 chr12 133851895 + 121389903 121389947 MER97a 834 - 154 198 213647 44 chain 27231 chr12 133851895 + 121398091 121398388 AluY 311 + 2 300 95491 130 0 1 167 chain 11994 chr12 133851895 + 121455139 121455278 AluSg 306 + 2 141 152223 139 chain 25585 chr12 133851895 + 121462774 121463069 AluSg7 307 - 2 298 101803 173 0 1 122 chain 18788 chr12 133851895 + 121479457 121479708 AluY 311 + 37 303 130713 89 0 1 109 16 30 37 chain 4153 chr12 133851895 + 121484487 121484572 MLT1H 522 + 67 149 205206 38 23 20 24 chain 11759 chr12 133851895 + 121487320 121487486 MSTA 426 + 197 405 153223 30 0 34 39 10 18 87 chain 5155 chr12 133851895 + 121488699 121488757 MLT1J 494 - 342 400 193494 58 chain 29759 chr12 133851895 + 121501491 121501803 AluYb8 318 + 0 312 85609 312 chain 6194 chr12 133851895 + 121503251 121503360 L1MCa 1829 - 408 517 183620 5 1 0 56 8 7 16 3 5 20 chain 169344 chr12 133851895 + 121513114 121515417 SVA_D 2077 + 10 2061 22138 25 3 1 272 1 0 151 0 76 89 76 0 181 39 0 103 2 0 8 3 1 26 97 9 38 1 0 19 78 0 77 1 0 97 48 0 36 0 1 168 0 1 4 9 8 44 1 0 284 0 10 322 chain 2181 chr12 133851895 + 121513655 121513681 SVA_D 2077 + 584 610 188062 26 chain 2241 chr12 133851895 + 121513914 121513951 SVA_D 2077 + 808 845 61573 37 chain 5876 chr12 133851895 + 121514093 121514190 SVA_D 2077 + 1130 1228 61573 83 0 1 14 chain 3514 chr12 133851895 + 121514268 121514326 SVA_D 2077 + 1256 1314 61573 58 chain 1723 chr12 133851895 + 121531044 121531072 LTR12C 1709 - 891 919 176910 28 chain 11201 chr12 133851895 + 121531072 121531248 LTR12C 1709 - 600 935 155419 82 33 192 61 chain 7627 chr12 133851895 + 121531969 121532938 L1MA7 2200 + 995 1974 173365 82 825 837 32 7 5 23 chain 29739 chr12 133851895 + 121537287 121537764 LTR43 600 - 114 600 85692 15 55 61 63 6 7 41 10 13 68 1 0 218 chain 8742 chr12 133851895 + 121540872 121540983 L1MA4 2864 + 2505 2616 166960 111 chain 21683 chr12 133851895 + 121587124 121587486 THE1B 368 - 0 368 121456 119 17 25 10 1 5 10 37 30 52 5 6 111 chain 7612 chr12 133851895 + 121589467 121589699 L1MB5 1630 - 30 261 173462 19 44 43 24 69 70 52 1 0 23 chain 4892 chr12 133851895 + 121601567 121601629 MER3 215 + 152 215 196351 4 0 1 58 chain 6892 chr12 133851895 + 121620992 121621090 Tigger3b 1229 - 603 699 178257 58 2 0 38 chain 7968 chr12 133851895 + 121650110 121650233 AluJr 308 + 12 118 171228 81 18 1 24 chain 14381 chr12 133851895 + 121653793 121654002 MER30 238 - 1 212 143266 45 1 0 60 20 23 83 chain 28671 chr12 133851895 + 121692631 121693233 MLT2A1 477 + 0 466 90449 131 1 20 18 0 4 29 0 1 28 14 15 78 1 0 14 2 0 47 4 0 9 153 13 7 4 0 10 4 0 13 6 0 29 chain 77396 chr12 133851895 + 121717929 121718984 MER11C 1089 + 9 1063 44782 214 1 3 21 0 9 61 0 4 65 1 0 176 18 16 15 40 21 4 0 1 71 1 5 4 1 0 38 1 2 126 0 1 54 1 0 117 0 1 25 chain 26670 chr12 133851895 + 121740411 121740712 AluYf5 307 + 0 307 97426 274 0 6 27 chain 27483 chr12 133851895 + 121754256 121754564 AluY 311 + 2 311 94704 132 0 1 176 chain 28440 chr12 133851895 + 121800013 121800311 AluYa5 310 - 12 310 91422 298 chain 92324 chr12 133851895 + 121812085 121813616 LTR12C 1709 + 1 1709 38873 337 0 43 83 3 0 7 59 45 194 0 41 86 1 0 42 40 0 21 0 119 52 0 47 37 8 0 25 1 0 28 51 20 52 1 2 10 67 95 38 2 0 7 14 13 134 2 1 47 6 5 19 8 9 49 chain 3257 chr12 133851895 + 121812897 121812937 LTR12C 1709 + 1040 1080 141126 40 chain 24114 chr12 133851895 + 121820366 121820657 AluY 311 + 4 296 109671 128 0 1 163 chain 23356 chr12 133851895 + 121888383 121888673 AluY 311 + 3 294 113891 189 2 1 84 1 3 14 chain 10182 chr12 133851895 + 121901138 121901272 L1PA8 5853 + 5721 5853 159709 19 2 1 19 1 0 93 chain 25378 chr12 133851895 + 121965283 121965582 AluY 311 + 0 306 102793 63 0 8 62 1 0 173 chain 17244 chr12 133851895 + 122052753 122053087 MSTA 426 - 59 419 134940 21 32 35 6 0 5 49 22 0 9 0 22 10 4 5 37 0 6 6 5 15 37 4 5 92 chain 25176 chr12 133851895 + 122061655 122061947 AluSc 308 + 5 297 103865 292 chain 24247 chr12 133851895 + 122062318 122062583 L1PA4 6152 + 5886 6151 108957 265 chain 93685 chr12 133851895 + 122071618 122072654 SVA_D 2077 - 21 2077 38443 593 0 1012 414 0 12 10 4 0 15 chain 25354 chr12 133851895 + 122080311 122080603 AluSp 311 + 10 302 102924 292 chain 10644 chr12 133851895 + 122104088 122104217 BC200 147 - 13 143 157626 81 0 1 48 chain 23970 chr12 133851895 + 122106165 122106461 AluSp 311 + 0 296 110509 17 2 1 97 0 1 180 chain 22106 chr12 133851895 + 122136058 122136340 AluY 311 + 0 300 119751 26 1 0 106 0 1 124 6 24 19 chain 4850 chr12 133851895 + 122139873 122139937 MER5A1 166 + 90 151 196787 43 3 0 18 chain 8077 chr12 133851895 + 122167331 122167431 L1MB3 1562 + 1016 1115 170604 72 1 0 27 chain 25412 chr12 133851895 + 122168583 122168883 AluSp 311 + 2 301 102624 130 1 0 169 chain 5000 chr12 133851895 + 122178822 122179001 MER58B 340 - 58 245 195141 27 55 56 37 38 45 22 chain 4749 chr12 133851895 + 122192582 122192675 MLT1C 463 - 319 406 197926 4 1 0 16 6 0 10 12 13 44 chain 9537 chr12 133851895 + 122197172 122197301 MER50 708 - 7 142 162902 84 6 12 39 chain 3028 chr12 133851895 + 122215547 122215691 MER58A 224 - 19 173 224432 17 97 107 30 chain 25451 chr12 133851895 + 122291256 122291555 AluY 311 + 4 310 102449 103 0 5 18 1 3 177 chain 19324 chr12 133851895 + 122293676 122293900 AluSp 311 + 82 306 129170 224 chain 24663 chr12 133851895 + 122303925 122304222 AluY 311 + 4 298 106651 127 3 0 167 chain 12816 chr12 133851895 + 122348857 122351383 L1MB3 1562 - 143 890 148995 36 343 41 6 0 2 131 1955 476 55 chain 119791 chr12 133851895 + 122410054 122411890 THE1B-int 1605 + 27 1593 31124 236 6 7 92 311 0 70 4 29 214 0 1 4 0 2 462 0 1 302 0 8 15 0 1 20 0 1 20 0 1 80 chain 160858 chr12 133851895 + 122430911 122432883 SVA_F 1814 + 10 1814 23219 778 136 39 60 0 1 42 3 0 17 79 15 39 1 0 4 1 0 133 1 0 39 1 0 10 1 0 627 chain 2340 chr12 133851895 + 122431689 122431716 SVA_F 1814 + 918 945 83211 27 chain 5500 chr12 133851895 + 122431716 122431795 SVA_F 1814 + 847 924 82434 8 1 0 43 1 0 26 chain 2600 chr12 133851895 + 122431795 122431825 SVA_F 1814 + 1037 1067 83211 30 chain 5431 chr12 133851895 + 122431948 122432026 SVA_F 1814 + 1011 1089 82434 78 chain 22089 chr12 133851895 + 122511980 122512323 THE1B 368 - 0 368 119843 125 35 45 30 2 0 55 6 5 22 0 1 26 0 15 29 0 2 13 chain 6360 chr12 133851895 + 122515034 122515131 AluSz 310 + 6 105 182309 39 13 15 45 chain 8118 chr12 133851895 + 122590253 122590340 AluYk11 308 + 208 295 170394 87 chain 25142 chr12 133851895 + 122641787 122642080 AluSp 311 - 15 311 104050 202 0 3 91 chain 27031 chr12 133851895 + 122653984 122654289 AluY 311 + 4 309 96178 305 chain 3713 chr12 133851895 + 122654702 122654758 LTR37B 484 - 426 483 211745 12 2 3 42 chain 2612 chr12 133851895 + 122655378 122655483 MER5A 189 - 1 107 231524 16 11 11 17 41 42 20 chain 19219 chr12 133851895 + 122722075 122722278 AluYb8 318 - 4 207 129476 203 chain 25745 chr12 133851895 + 122736200 122736481 L1PA5 6144 + 5863 6144 101104 281 chain 18978 chr12 133851895 + 122786662 122786926 AluSp 311 - 25 291 130162 9 0 2 132 20 18 85 0 2 18 chain 23890 chr12 133851895 + 122816574 122816857 AluSp 311 + 4 297 110957 49 0 10 234 chain 26212 chr12 133851895 + 122830326 122830632 AluSp 311 - 6 311 99160 177 1 0 128 chain 161627 chr12 133851895 + 122841154 122843002 SVA_D 2077 + 0 2077 23111 14 0 4 443 0 39 80 0 1 247 40 0 80 3 0 7 4 140 38 1 0 10 2 0 237 1 0 7 0 98 613 1 0 14 1 0 5 chain 32039 chr12 133851895 + 122849444 122849792 L1PA3long 6157 + 5809 6157 80801 348 chain 3220 chr12 133851895 + 122857571 122857612 L1PB1 5432 + 5349 5389 220572 21 1 0 19 chain 23476 chr12 133851895 + 122861558 122861854 AluSg7 307 - 11 307 113238 142 16 17 5 1 0 132 chain 25973 chr12 133851895 + 122932740 122933036 AluSz 310 - 14 310 100127 296 chain 29623 chr12 133851895 + 122937622 122938039 LTR7B 505 - 14 505 86139 32 3 0 5 11 13 76 1 0 85 0 2 26 15 77 60 0 10 60 0 2 43 chain 33642 chr12 133851895 + 122951225 122951649 MER41A 554 - 66 511 78185 15 0 5 28 0 14 29 0 1 303 0 1 49 chain 24987 chr12 133851895 + 122993226 122993518 AluSp 311 + 5 297 104874 292 chain 28920 chr12 133851895 + 123010357 123010668 AluYa5 310 - 0 310 89370 184 1 0 126 chain 21663 chr12 133851895 + 123028339 123028614 AluSp 311 + 24 300 121528 28 0 1 45 0 1 26 1 0 16 2 1 48 0 1 109 chain 29663 chr12 133851895 + 123063600 123063910 AluYa5 310 - 0 310 86015 310 chain 114346 chr12 133851895 + 123076388 123077767 LTR12C 1709 + 0 1709 32981 436 0 1 172 2 1 182 1 319 6 2 0 107 0 4 97 0 4 24 0 1 58 2 3 25 2 6 263 chain 9547 chr12 133851895 + 123129460 123129591 LTR1 825 - 633 776 162845 6 0 1 68 3 2 34 0 12 20 chain 27771 chr12 133851895 + 123136686 123136986 AluYk4 311 - 11 311 93796 300 chain 108400 chr12 133851895 + 123160311 123161709 LTR12C 1709 - 0 1709 34591 84 5 4 107 0 4 18 5 6 258 11 4 106 4 2 4 1 0 18 2 1 79 0 278 156 5 6 110 3 0 83 0 43 75 1 0 263 chain 22985 chr12 133851895 + 123173371 123173657 AluSc 308 + 0 284 115690 26 1 0 97 1 0 161 chain 38002 chr12 133851895 + 123177186 123177714 LTR8 732 - 195 732 72129 285 8 11 67 6 5 18 0 8 33 7 6 104 chain 10024 chr12 133851895 + 123180373 123180557 HUERS-P1-int 2401 - 1637 1802 160467 4 1 0 7 0 1 31 40 21 101 chain 61290 chr12 133851895 + 123192801 123193471 SVA_D 2077 - 0 667 52211 5 2 0 627 1 0 35 chain 10815 chr12 133851895 + 123193798 123193982 HUERS-P1-int 2401 - 1637 1802 156916 43 40 21 101 chain 3807 chr12 133851895 + 123217311 123217352 MER102c 337 + 240 281 210284 41 chain 27079 chr12 133851895 + 123223494 123223804 AluSp 311 - 0 310 96004 310 chain 82584 chr12 133851895 + 123235406 123236378 LTR5_Hs 974 - 0 974 42508 219 0 8 12 10 0 717 0 4 14 chain 4208 chr12 133851895 + 123239222 123239276 MADE1 96 - 26 96 204444 8 0 16 46 chain 8215 chr12 133851895 + 123252645 123252745 HY3 101 + 0 100 169858 100 chain 27489 chr12 133851895 + 123259354 123259663 AluY 311 + 0 305 94685 125 5 1 179 chain 4186 chr12 133851895 + 123281231 123281291 FLAM_C 140 + 71 130 204755 40 2 1 18 chain 3593 chr12 133851895 + 123292852 123292890 MADE1 96 - 57 95 213773 38 chain 139278 chr12 133851895 + 123294180 123295727 L1PA5 6144 + 4597 6144 26252 1547 chain 6187 chr12 133851895 + 123307238 123307492 L1MA7 2200 - 252 515 183681 65 152 165 15 4 0 18 chain 26482 chr12 133851895 + 123385769 123386063 AluYf4 310 - 14 309 98111 50 0 1 244 chain 31441 chr12 133851895 + 123389975 123390331 L1PA7 6471 + 6109 6465 81745 356 chain 29463 chr12 133851895 + 123392656 123392967 AluYb9 318 - 7 318 86784 311 chain 23947 chr12 133851895 + 123421176 123421467 AluSp 311 + 7 298 110638 291 chain 30436 chr12 133851895 + 123457829 123458147 AluYb8 318 + 0 318 83556 318 chain 21422 chr12 133851895 + 123458161 123458411 AluY 311 + 35 286 122434 88 3 4 159 chain 22050 chr12 133851895 + 123508196 123509130 L1MB7 1623 + 747 1475 120019 48 41 43 32 3 0 89 260 111 20 0 1 4 1 0 92 133 105 11 3 0 20 1 0 10 64 61 29 1 0 6 52 32 14 chain 29129 chr12 133851895 + 123532947 123533257 AluYb8 318 - 7 317 88413 310 chain 3644 chr12 133851895 + 123551576 123551697 MLT1C 463 + 58 165 212900 37 65 51 19 chain 33702 chr12 133851895 + 123588846 123589338 LTR7 482 + 0 474 78092 86 50 0 12 18 17 115 0 31 158 12 14 41 chain 12847 chr12 133851895 + 123609130 123609278 L1PA5 6144 - 9 159 148859 27 0 2 121 chain 24385 chr12 133851895 + 123615061 123615335 AluY 311 + 16 291 108163 116 0 1 158 chain 25311 chr12 133851895 + 123682359 123682644 AluY 311 + 11 296 103166 112 1 0 9 0 1 163 chain 24954 chr12 133851895 + 123728695 123729000 AluSp 311 + 0 303 105035 14 2 0 289 chain 249387 chr12 133851895 + 123730885 123736392 L1PBa1 4058 - 735 4047 16289 93 200 0 69 327 0 173 0 4 176 0 2 11 1 0 56 0 3 42 0 1 33 0 5 55 1 5 79 309 0 48 3 0 184 4 6 185 1 0 28 1411 0 260 0 4 134 1 0 34 7 6 76 0 5 83 0 1 11 1 0 32 7 21 49 0 3 83 1 0 80 0 2 60 0 1 27 0 17 27 2 1 104 1 0 17 0 2 262 2 0 5 1 2 26 8 7 24 1 0 33 5 4 110 0 1 23 2 0 110 17 20 61 2 0 72 0 1 109 1 0 5 5 3 11 1 0 25 chain 5736 chr12 133851895 + 123733424 123733619 LTR12C 1709 - 975 1055 187772 45 115 0 35 chain 11321 chr12 133851895 + 123736431 123736578 MLT2A1 477 - 117 265 154999 30 2 3 115 chain 47225 chr12 133851895 + 123744555 123745141 LTR10C 591 + 0 591 61026 253 7 9 186 0 1 53 6 8 81 chain 24451 chr12 133851895 + 123763985 123764294 AluSp 311 - 3 311 107799 148 1 0 160 chain 22633 chr12 133851895 + 123800794 123801070 AluSp 311 - 35 311 117411 276 chain 7162 chr12 133851895 + 123833547 123833647 HY3 101 - 1 101 176321 28 3 0 5 0 3 64 chain 26733 chr12 133851895 + 123846705 123847011 AluY 311 + 4 311 97210 122 0 1 184 chain 13062 chr12 133851895 + 123854784 123854936 L1PA5 6144 + 5990 6144 147979 6 0 2 146 chain 96809 chr12 133851895 + 123856249 123857392 SVA_A 1864 + 18 1855 37609 385 0 116 130 0 589 41 3 0 350 1 0 81 8 1 144 chain 22953 chr12 133851895 + 123864685 123864977 AluSp 311 + 0 288 115839 52 10 7 51 2 1 177 chain 124195 chr12 133851895 + 123897794 123899225 LTR12C 1709 - 0 1709 29629 82 1 0 399 0 4 106 3 1 5 1 0 104 0 278 730 chain 22441 chr12 133851895 + 123899225 123899499 AluY 311 + 30 302 118286 243 2 0 29 chain 20105 chr12 133851895 + 123923279 123923519 AluY 311 + 43 283 126806 90 1 0 77 4 5 68 chain 25132 chr12 133851895 + 123931354 123931648 AluY 311 + 6 300 104110 294 chain 16151 chr12 133851895 + 123960821 123961011 AluSp 311 + 116 305 137896 16 1 0 173 chain 71029 chr12 133851895 + 123977203 123978120 LTR5_Hs 974 + 16 974 47913 105 6 7 85 1 0 26 0 35 11 0 1 181 0 1 188 1 0 163 8 15 31 8 6 103 chain 23114 chr12 133851895 + 123986035 123986321 AluSc 308 + 9 294 115068 248 9 8 29 chain 5515 chr12 133851895 + 124011522 124011594 MLT1D 503 + 39 118 189890 8 0 7 64 chain 7637 chr12 133851895 + 124030092 124030183 MER6 865 + 55 146 173310 91 chain 58582 chr12 133851895 + 124032964 124033701 LTR17 781 + 1 757 53653 58 1 0 97 1 0 171 1 0 368 2 24 38 chain 338611 chr12 133851895 + 124035504 124039815 HERV17-int 4347 + 13 4347 11935 14 1 0 50 2 1 34 2 0 27 1 0 151 2 332 86 0 2 79 1 0 684 1 0 4 0 1 126 305 0 235 7 10 123 0 5 171 0 1 1263 3 0 49 0 5 112 12 4 158 3 2 605 chain 55390 chr12 133851895 + 124041955 124043283 LTR17 781 + 0 754 55465 59 1 0 97 6 5 71 1 2 67 594 0 26 1 0 369 1 23 35 chain 52281 chr12 133851895 + 124042283 124042851 L1PA3long 6157 - 0 568 57438 568 chain 7652 chr12 133851895 + 124060090 124060305 Tigger3a 397 + 138 371 173218 10 0 10 19 5 9 77 89 93 15 chain 23885 chr12 133851895 + 124064514 124064823 AluY 311 + 2 303 110987 76 9 1 53 0 1 143 2 1 26 chain 23347 chr12 133851895 + 124068271 124068557 AluSx3 311 + 0 288 113942 31 3 0 101 0 1 119 0 4 32 chain 5704 chr12 133851895 + 124125223 124125428 MER58B 340 + 87 315 188074 17 1 0 13 16 20 41 87 107 30 chain 3851 chr12 133851895 + 124128762 124128809 U3 216 + 11 58 209634 47 chain 3488 chr12 133851895 + 124140418 124140485 MER33 330 + 152 221 215542 18 15 17 34 chain 25902 chr12 133851895 + 124177562 124177872 AluSp 311 - 1 311 100425 310 chain 3795 chr12 133851895 + 124219437 124219480 MER113A 284 + 126 169 210462 43 chain 23185 chr12 133851895 + 124229986 124230275 AluY 311 + 15 303 114750 117 0 1 128 10 8 34 chain 44055 chr12 133851895 + 124258931 124259442 MER9a1 513 - 0 513 64151 255 0 1 242 3 4 11 chain 27295 chr12 133851895 + 124260359 124260728 THE1C 375 - 0 375 95289 25 15 23 141 1 2 61 3 0 123 chain 6370 chr12 133851895 + 124307196 124307277 MLT2B1 522 - 67 148 182249 81 chain 45814 chr12 133851895 + 124312828 124313391 LTR19B 566 - 1 566 62213 51 1 2 443 0 1 68 chain 2894 chr12 133851895 + 124343168 124343215 L1MB7 1623 + 1386 1423 227120 7 10 0 30 chain 80565 chr12 133851895 + 124365201 124366126 L1PA5 6144 - 0 927 43363 11 1 3 913 chain 104859 chr12 133851895 + 124431309 124432652 LTR12C 1709 + 0 1709 35538 192 5 6 15 4 1 68 4 0 8 9 0 360 0 278 184 1 0 4 4 2 106 0 4 212 0 1 15 45 16 4 1 0 38 1 132 63 chain 21221 chr12 133851895 + 124461362 124461630 AluY 311 + 11 288 123135 36 4 10 75 0 1 142 0 2 11 chain 5039 chr12 133851895 + 124512637 124512698 MIRb 242 + 67 128 194734 61 chain 33413 chr12 133851895 + 124531878 124532359 MER1A 529 + 42 529 78542 38 4 12 194 5 0 143 41 44 56 chain 7621 chr12 133851895 + 124551817 124551913 L1MD 993 + 405 501 173398 96 chain 31853 chr12 133851895 + 124559568 124559993 LTR7B 505 + 0 498 81093 105 0 10 60 0 38 12 3 27 26 0 2 79 1 0 27 0 1 54 14 13 44 chain 17595 chr12 133851895 + 124560000 124560211 LTR9 672 - 461 672 134009 211 chain 22381 chr12 133851895 + 124565890 124566171 AluSg7 307 - 14 299 118584 152 9 10 58 0 3 62 chain 4525 chr12 133851895 + 124577920 124578016 HAL1-2a_MD 234 - 91 228 200496 12 3 0 6 5 0 24 6 60 28 5 0 7 chain 164105 chr12 133851895 + 124585705 124587547 SVA_D 2077 - 16 2059 22796 34 4 0 590 0 49 94 2 0 208 0 183 142 3 0 33 0 3 672 25 0 35 chain 48755 chr12 133851895 + 124590244 124590953 LTR17 781 - 0 776 59905 11 1 2 27 2 24 99 13 62 20 1 0 15 4 3 51 18 15 39 23 24 62 1 0 322 chain 24115 chr12 133851895 + 124613459 124613744 AluSp 311 - 26 311 109666 285 chain 30060 chr12 133851895 + 124626301 124626724 MER4A1 472 - 23 472 84630 44 14 16 114 24 44 213 0 4 14 chain 23498 chr12 133851895 + 124630742 124631045 AluSg4 309 + 6 306 113138 117 1 0 8 2 0 175 chain 36657 chr12 133851895 + 124645275 124645842 L1PB1 5432 - 45 583 74015 17 1 0 24 2 0 14 1 0 5 8 6 22 10 0 3 1 0 16 1 0 44 1 0 15 2 1 53 2 0 8 5 1 11 1 0 12 1 0 20 5 0 7 6 9 226 0 1 23 chain 1005 chr12 133851895 + 124647733 124647844 THE1A 353 - 0 111 114522 111 chain 13823 chr12 133851895 + 124647862 124648085 THE1A 353 - 129 352 145169 26 1 0 5 5 5 92 1 0 28 2 0 5 0 2 6 5 7 47 chain 124489 chr12 133851895 + 124648086 124649959 THE1A-int 1579 - 0 1579 29546 4 0 1 4 1 0 260 0 11 42 0 1 285 0 2 529 0 2 13 312 2 423 chain 6953 chr12 133851895 + 124649959 124650038 THE1A 353 - 0 79 177791 79 chain 2199 chr12 133851895 + 124650057 124650300 THE1A 353 - 120 353 114522 31 1 0 106 1 0 48 0 1 4 7 0 30 2 0 13 chain 15140 chr12 133851895 + 124729448 124729657 L1PA16 3655 - 723 936 140949 24 9 12 25 0 2 127 1 0 23 chain 22122 chr12 133851895 + 124735558 124735851 AluSq 315 + 9 298 119689 88 3 2 37 11 9 7 0 3 29 4 0 114 chain 3706 chr12 133851895 + 124735852 124735912 MER53 195 + 132 194 211855 43 5 7 12 chain 7124 chr12 133851895 + 124769567 124769775 MLT1A0 366 - 98 304 176587 15 93 85 11 7 13 82 chain 4562 chr12 133851895 + 124783449 124783509 L1PB1 5432 + 5346 5404 200084 24 1 0 22 1 0 12 chain 17752 chr12 133851895 + 124783916 124784313 L1PB1 5432 - 5 368 133557 4 1 0 5 1 0 14 1 0 13 5 4 17 1 0 24 2 0 15 1 0 4 37 25 6 2 0 16 1 0 44 18 17 51 2 0 9 7 3 10 1 0 12 1 0 19 5 0 10 1 2 20 0 2 17 chain 7131 chr12 133851895 + 124909540 124909638 MER30 238 + 0 105 176535 18 1 8 79 chain 5295 chr12 133851895 + 124920393 124920459 MIR 256 + 63 129 192063 66 chain 13778 chr12 133851895 + 124958198 124958368 THE1B 368 + 199 368 145339 94 1 0 75 chain 2977 chr12 133851895 + 124972083 124972157 MER31B 477 + 115 313 225495 16 27 151 31 chain 26091 chr12 133851895 + 125013445 125013748 AluSp 311 + 2 305 99658 303 chain 13630 chr12 133851895 + 125018385 125018593 MER30 238 + 0 238 145853 16 0 1 7 6 24 52 2 0 5 4 17 116 chain 4202 chr12 133851895 + 125048500 125048544 MIR 256 + 72 116 204510 44 chain 4192 chr12 133851895 + 125062125 125062179 MIRb 242 + 81 134 204657 31 1 0 22 chain 4094 chr12 133851895 + 125069196 125069243 MADE1 96 + 47 94 206020 47 chain 21401 chr12 133851895 + 125082923 125083323 L1PA15 4387 + 3980 4366 122508 122 0 2 26 1 0 54 58 54 18 17 14 44 3 1 12 6 1 28 1 0 10 chain 39297 chr12 133851895 + 125099964 125101145 MER41A 554 - 0 554 70337 109 326 0 70 320 0 90 4 22 153 1 11 7 10 0 52 0 1 39 chain 7672 chr12 133851895 + 125109662 125109798 MLT1B 390 - 98 236 173089 85 32 34 19 chain 3404 chr12 133851895 + 125113862 125113901 MER58B 340 + 170 209 217011 39 chain 32365 chr12 133851895 + 125115450 125115837 MER41A 554 + 0 387 80247 387 chain 2009 chr12 133851895 + 125118154 125118201 MLT1L 557 - 10 54 238551 4 1 0 18 4 3 4 1 0 15 chain 5412 chr12 133851895 + 125141959 125142068 LTR54B 464 - 181 294 190875 17 6 7 4 1 0 19 1 0 4 8 13 49 chain 4049 chr12 133851895 + 125170613 125170658 MIR 256 - 141 186 206652 45 chain 4226 chr12 133851895 + 125192467 125192666 MLT1J 494 + 66 275 204217 13 10 16 7 6 0 35 103 113 25 chain 55755 chr12 133851895 + 125202384 125203173 HSMAR1 1287 + 1 1285 55268 85 1 3 18 23 27 7 3 0 18 0 5 141 5 0 8 8 498 341 5 7 126 chain 2672 chr12 133851895 + 125238944 125238994 MLT1H 522 - 373 422 230751 25 8 7 17 chain 4344 chr12 133851895 + 125243434 125243488 Eulor2A 113 - 60 113 202684 41 1 0 12 chain 3329 chr12 133851895 + 125250677 125250712 MIR 256 + 101 136 218411 35 chain 3233 chr12 133851895 + 125297696 125297732 MLT1J 494 + 122 158 220370 36 chain 41420 chr12 133851895 + 125311649 125312147 LTR2C 499 - 0 493 67393 63 0 1 243 26 20 166 chain 25775 chr12 133851895 + 125349345 125349655 AluSp 311 + 10 311 100989 46 10 1 254 chain 2966 chr12 133851895 + 125355709 125355741 MER33 330 + 222 254 225752 32 chain 24505 chr12 133851895 + 125374890 125375173 AluSg7 307 + 18 302 107519 113 0 1 170 chain 11156 chr12 133851895 + 125383692 125383826 MER75B 242 - 0 133 155613 26 1 0 107 chain 3211 chr12 133851895 + 125402681 125402715 L1MB3 1562 - 143 177 220717 34 chain 6808 chr12 133851895 + 125406300 125406372 tRNA-Ala-GCG 72 - 0 72 178895 72 chain 3638 chr12 133851895 + 125411923 125411962 tRNA-Asp-GAY 44 - 5 44 213017 39 chain 6994 chr12 133851895 + 125412388 125412461 tRNA-Phe-TTY 73 - 0 73 177514 73 chain 22149 chr12 133851895 + 125419293 125419599 AluSp 311 - 0 300 119595 93 9 10 84 6 0 12 2 1 100 chain 3638 chr12 133851895 + 125424225 125424264 tRNA-Asp-GAY 44 - 5 44 213016 39 chain 6555 chr12 133851895 + 125424511 125424583 tRNA-Ala-GCG 72 + 0 72 180818 72 chain 23563 chr12 133851895 + 125467665 125467942 AluYc3 301 - 23 301 112778 163 1 2 113 chain 24026 chr12 133851895 + 125474100 125474398 AluSg7 307 + 3 297 110183 106 1 0 23 3 0 165 chain 22854 chr12 133851895 + 125516726 125517021 AluSc8 310 + 0 297 116315 120 6 13 156 5 0 8 chain 22441 chr12 133851895 + 125533006 125533254 L1PA3long 6157 + 5905 6155 118292 25 0 2 223 chain 31144 chr12 133851895 + 125537813 125538162 SVA_C 1631 - 339 688 82265 288 0 1 53 1 0 7 chain 97147 chr12 133851895 + 125544513 125546102 MER4-int 2692 - 0 1285 37526 36 1 0 7 318 0 134 1 2 226 0 2 264 3 0 8 1 0 67 0 1 164 1 0 95 0 13 103 7 6 47 10 5 29 1 6 29 1 5 36 chain 25555 chr12 133851895 + 125544568 125544866 AluY 311 + 0 303 101950 87 0 4 41 0 1 170 chain 16493 chr12 133851895 + 125549208 125549431 MER4A1 472 - 242 472 136950 14 1 0 96 0 4 28 0 1 52 3 6 29 chain 15747 chr12 133851895 + 125597245 125597581 THE1B 368 - 40 368 139118 16 8 10 14 2 1 95 24 15 37 41 42 49 1 2 22 12 10 15 chain 28717 chr12 133851895 + 125632266 125632632 MLT2A1 477 + 0 385 90270 142 0 1 25 0 18 86 3 4 46 2 1 62 chain 23594 chr12 133851895 + 125647433 125647713 AluSc 308 - 27 308 112607 128 3 4 149 chain 4608 chr12 133851895 + 125682059 125682117 MER58A 224 + 50 108 199533 58 chain 6950 chr12 133851895 + 125703444 125703570 L1MB5 1630 + 1496 1619 177809 53 12 11 41 2 1 9 1 0 8 chain 5411 chr12 133851895 + 125710380 125710447 MLT1J2 417 - 306 373 190887 67 chain 4034 chr12 133851895 + 125720111 125720291 L1MB5 1630 - 90 271 206861 14 0 1 16 116 116 34 chain 4692 chr12 133851895 + 125741218 125741299 MADE1 96 + 0 96 198607 16 1 0 5 8 24 51 chain 16409 chr12 133851895 + 125788512 125788745 MER1B 344 - 1 241 137184 57 11 19 35 1 4 8 4 0 117 chain 3885 chr12 133851895 + 125796552 125796694 MER102c 337 - 68 206 209106 33 82 78 27 chain 2747 chr12 133851895 + 125800162 125800191 MIR 256 - 122 151 229520 29 chain 4489 chr12 133851895 + 125852746 125852815 L1MC4 1079 - 302 370 200913 13 7 6 49 chain 46748 chr12 133851895 + 125853431 125853960 L1PA5 6144 - 12 541 61415 529 chain 21616 chr12 133851895 + 125895797 125896061 L1PA7 6471 + 6201 6461 121706 120 4 0 140 chain 121489 chr12 133851895 + 125904171 125905791 THE1B-int 1605 - 0 1605 30541 295 10 17 114 3 0 490 5 1 14 11 5 8 0 8 202 38 21 430 chain 14732 chr12 133851895 + 125918067 125918227 L1PA2 6032 - 2 162 142165 160 chain 84316 chr12 133851895 + 125923589 125924716 L1PREC2 3366 - 521 1634 41782 29 2 0 10 1 0 54 2 0 11 11 6 43 1 8 12 10 0 432 0 1 433 8 6 68 chain 485921 chr12 133851895 + 125962248 125967798 L1PA6 6164 + 582 6162 7525 564 0 2 273 3 8 904 0 1 248 0 4 603 0 1 777 3 5 86 0 1 39 0 1 263 0 4 619 1 0 424 0 10 743 chain 77557 chr12 133851895 + 125983868 125984741 MER11D 897 + 0 897 44710 470 0 1 115 1 24 287 chain 23756 chr12 133851895 + 126026299 126026600 AluY 311 + 16 311 111733 107 9 4 142 7 6 36 chain 22577 chr12 133851895 + 126031358 126031720 THE1C 375 - 0 375 117686 117 1 0 8 53 64 5 0 2 92 1 2 85 chain 15496 chr12 133851895 + 126040099 126040268 L1PA5 6144 + 5973 6142 139912 169 chain 67614 chr12 133851895 + 126044943 126046073 L1PA7 6471 + 5664 6466 49398 134 329 0 446 0 1 221 chain 28923 chr12 133851895 + 126045086 126045406 AluYb8 318 + 0 317 89362 123 3 0 194 chain 7729 chr12 133851895 + 126047735 126047859 Tigger1 2417 - 2234 2360 172720 12 7 6 19 0 2 5 2 3 79 chain 306610 chr12 133851895 + 126085296 126089158 L1PA8 5853 + 1974 5853 13147 43 0 1 61 2 1 121 0 1 265 14 18 69 2 0 43 0 1 284 1 0 43 0 3 1005 2 0 121 0 4 135 9 15 334 0 2 36 0 4 392 0 2 31 8 10 175 0 7 6 29 22 335 1 0 46 2 0 72 8 6 6 3 0 5 0 3 38 2 1 19 2 1 92 chain 8859 chr12 133851895 + 126100336 126100446 LTR49 580 - 0 110 166325 110 chain 32097 chr12 133851895 + 126100498 126100855 L1PA4 6152 - 9 370 80695 43 0 4 314 chain 192366 chr12 133851895 + 126112504 126115130 L1MA2 4263 - 149 2775 19823 9 1 0 38 16 9 46 0 13 34 2 1 6 1 0 115 0 1 34 9 6 56 0 2 81 1 0 29 1 3 41 1 0 4 6 3 17 6 5 49 21 20 591 0 1 87 0 6 163 2 0 680 4 5 420 17 13 38 chain 54541 chr12 133851895 + 126119699 126120358 L1PA7 6471 - 9 670 56003 4 1 0 142 0 1 6 1 2 8 1 2 496 chain 38072 chr12 133851895 + 126132448 126132866 L1PA2 6032 - 0 418 72028 418 chain 25198 chr12 133851895 + 126153196 126153527 L1PA7 6471 - 7 335 103751 5 3 0 35 5 6 4 1 0 278 chain 5100 chr12 133851895 + 126187189 126187251 MLT1A0 366 - 216 278 194086 62 chain 52554 chr12 133851895 + 126209712 126210334 LTR14B 630 + 3 630 57265 547 0 5 75 chain 231680 chr12 133851895 + 126213961 126216493 L1PA3long 6157 + 3622 6157 17222 738 0 2 72 0 1 1722 chain 17752 chr12 133851895 + 126220856 126221217 THE1B 368 - 0 368 133558 56 7 6 66 8 16 10 5 9 13 90 86 106 chain 59674 chr12 133851895 + 126230721 126231552 L1P3 4156 - 3329 4156 53003 175 1 0 219 10 11 20 1 0 12 22 10 8 0 12 40 1 0 65 15 14 69 2 1 171 chain 38694 chr12 133851895 + 126247735 126248242 L1PA7 6471 - 3 519 71158 143 10 20 10 2 0 206 0 2 93 9 8 34 chain 5108 chr12 133851895 + 126295619 126295678 L1PA5 6144 - 12 70 193993 53 1 0 5 chain 4288 chr12 133851895 + 126303690 126303753 MER77 626 + 9 77 203366 50 2 7 11 chain 2837 chr12 133851895 + 126325105 126325139 MLT1K 546 - 334 368 228130 34 chain 20789 chr12 133851895 + 126334096 126334522 MSTA 426 + 0 426 124649 110 60 38 54 52 50 11 4 3 30 1 21 47 1 6 56 chain 36852 chr12 133851895 + 126351224 126351734 MER41C 542 - 0 530 73732 212 0 21 114 29 28 18 1 0 99 0 1 37 chain 5107 chr12 133851895 + 126353597 126353658 MLT1A0 366 - 79 140 194013 61 chain 67539 chr12 133851895 + 126361223 126362001 L1PA5 6144 - 7 786 49422 240 0 2 4 1 0 533 chain 45368 chr12 133851895 + 126362001 126362522 L1PA5 6144 + 4838 5359 62231 354 0 1 94 1 0 72 chain 10641 chr12 133851895 + 126376031 126376199 THE1D 372 + 0 160 157650 46 9 0 19 13 14 81 chain 44829 chr12 133851895 + 126386375 126386888 L1PA5 6144 - 1 512 63256 10 3 1 500 chain 21266 chr12 133851895 + 126390534 126390873 THE1B 368 - 20 368 122973 105 43 53 21 1 0 15 19 0 10 0 19 125 chain 28596 chr12 133851895 + 126397430 126397808 THE1C 375 + 0 375 90752 64 2 0 122 0 1 71 1 0 92 1 0 25 chain 9711 chr12 133851895 + 126421736 126421940 L1PB1 5432 - 10 193 162026 18 1 0 13 1 0 20 2 1 24 2 0 14 9 6 18 28 16 11 1 0 42 chain 24570 chr12 133851895 + 126446965 126447336 THE1D 372 - 0 372 107145 32 1 0 64 2 0 83 1 0 6 13 9 6 0 6 56 1 0 15 0 2 77 1 3 13 chain 61245 chr12 133851895 + 126449194 126450005 L1PA8 5853 + 5051 5853 52231 440 1 0 73 2 1 45 2 0 58 22 20 52 2 1 19 1 0 48 17 16 29 chain 77405 chr12 133851895 + 126458675 126459575 MER11D 897 + 0 897 44777 35 7 0 76 0 1 474 1 24 85 20 0 202 chain 67107 chr12 133851895 + 126507386 126508191 L1PA7 6471 - 2 811 49615 10 5 0 137 1 2 120 0 5 55 0 3 477 chain 50379 chr12 133851895 + 126525882 126526437 L1PA3long 6157 + 5586 6142 58726 428 0 1 127 chain 149305 chr12 133851895 + 126529668 126531776 L1PB1 5432 + 3340 5424 24713 56 1 2 334 1 4 164 4 0 47 11 9 370 0 14 281 3 0 87 1 0 63 1 2 264 9 10 5 1 0 51 26 24 11 1 0 9 16 11 11 6 4 47 2 1 10 7 6 44 1 0 15 3 0 7 13 5 18 12 9 11 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 22042 chr12 133851895 + 126533916 126534290 THE1A 353 - 0 353 120060 49 13 5 67 26 14 10 3 1 73 17 15 6 0 2 63 0 1 47 chain 170250 chr12 133851895 + 126537380 126539538 HERVL-int 5654 + 3460 5635 22021 243 1 0 235 0 1 362 0 16 369 0 1 136 2 1 75 1 4 78 0 3 241 14 4 112 0 11 72 2 0 5 4 0 206 chain 30011 chr12 133851895 + 126549511 126549845 L1PA4 6152 - 9 343 84773 334 chain 3216 chr12 133851895 + 126550182 126550217 MER102c 337 - 60 95 220646 35 chain 25374 chr12 133851895 + 126559722 126560018 L1PA7 6471 - 10 306 102811 296 chain 186927 chr12 133851895 + 126565906 126568139 L1PA7 6471 + 4213 6470 20340 140 0 1 319 0 4 925 0 4 97 2 1 65 7 22 499 20 21 159 chain 29677 chr12 133851895 + 126611979 126612507 L1PB1 5432 + 4929 5427 85911 174 13 11 24 2 1 7 1 0 10 20 14 50 2 1 16 1 0 43 1 0 16 27 19 12 2 0 4 1 0 15 1 0 24 2 1 20 1 0 13 1 0 14 1 0 5 1 0 4 chain 54035 chr12 133851895 + 126636147 126636723 L1PA2 6032 + 5450 6026 56337 576 chain 12812 chr12 133851895 + 126661703 126662034 L1PB1 5432 + 5134 5427 149006 12 1 0 12 26 14 48 2 1 11 13 12 37 1 0 15 24 12 13 30 25 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 2689 chr12 133851895 + 126689251 126689336 MLT1E2 623 - 64 166 230356 15 41 58 29 chain 5927 chr12 133851895 + 126735423 126735488 L1PB2 3958 + 3683 3748 185916 65 chain 4570 chr12 133851895 + 126742397 126742463 L1PA16 3655 + 3524 3590 200000 44 0 3 6 3 0 13 chain 6246 chr12 133851895 + 126748090 126748158 L1PA3long 6157 - 7 75 183202 68 chain 3775 chr12 133851895 + 126748158 126748198 L1PA3long 6157 + 6098 6138 210753 40 chain 4706 chr12 133851895 + 126750586 126750644 MIR 256 - 115 182 198422 16 0 9 42 chain 25284 chr12 133851895 + 126764024 126764379 THE1B 368 + 0 368 103298 40 0 5 124 1 0 32 0 1 7 27 35 124 chain 73090 chr12 133851895 + 126768334 126769202 L1PA7 6471 - 468 1385 46987 260 9 37 546 0 21 53 chain 31832 chr12 133851895 + 126769202 126769575 L1PA7 6471 + 6085 6458 81117 373 chain 568153 chr12 133851895 + 126783556 126789584 L1HS 6032 - 0 6029 22 5959 0 1 69 chain 517163 chr12 133851895 + 126805204 126811329 L1PA6 6164 - 2 6164 5463 200 0 1 9 0 1 1167 5 0 358 7 0 463 1 0 536 12 34 120 1 0 940 5 0 174 0 1 483 0 1 94 0 1 478 3 4 178 0 1 15 0 1 80 1 18 39 7 8 247 11 10 87 0 1 9 14 13 13 0 8 94 0 1 23 9 9 242 chain 173649 chr12 133851895 + 126865308 126867635 L1PB1 5432 + 2704 5026 21629 81 0 1 56 1 0 12 12 22 128 6 4 49 1 0 323 0 1 197 1 0 139 35 20 177 0 1 110 15 3 104 0 1 106 0 1 68 1 2 319 1 4 98 0 1 73 11 12 29 6 7 125 0 5 43 chain 18640 chr12 133851895 + 126875270 126875540 MER41A 554 + 290 554 131109 118 11 0 60 9 14 72 chain 13241 chr12 133851895 + 126886668 126886952 L1PB1 5432 - 2 263 147316 4 1 0 4 1 0 18 1 0 11 1 0 22 2 1 24 2 0 14 9 6 14 5 0 9 5 1 7 1 0 14 1 0 37 12 11 10 7 6 48 chain 27228 chr12 133851895 + 126905126 126905420 AluYb9 318 + 11 305 95506 294 chain 6149 chr12 133851895 + 126909125 126909202 MER82 654 + 572 649 183990 77 chain 62786 chr12 133851895 + 126933829 126934613 LTR17 781 - 9 781 51545 34 23 6 16 3 6 383 0 1 90 0 1 235 chain 50504 chr12 133851895 + 126938414 126939007 LTR10C 591 - 0 591 58650 560 2 0 31 chain 26783 chr12 133851895 + 126956348 126956675 L1PA7 6471 + 6139 6466 97034 70 0 1 247 1 0 9 chain 27163 chr12 133851895 + 126985922 126986237 AluY 311 + 0 311 95709 118 4 0 193 chain 8779 chr12 133851895 + 126990968 126991088 L1PA8 5853 - 6 124 166766 87 1 0 19 2 1 11 chain 6945 chr12 133851895 + 126994240 126994322 MER85 139 + 14 96 177859 82 chain 5418 chr12 133851895 + 127007435 127007784 L1MA9 1812 - 233 568 190811 7 0 10 22 19 16 20 201 173 12 0 5 35 15 17 18 chain 6614 chr12 133851895 + 127018441 127018596 L1MA3 4352 + 4205 4322 180345 31 4 0 22 2 0 24 1 0 6 1 0 18 33 3 13 chain 39071 chr12 133851895 + 127025696 127026137 L1PA6 6164 + 5719 6160 70641 441 chain 15630 chr12 133851895 + 127039742 127039997 MER41B 635 - 347 635 139493 27 24 36 10 0 15 7 4 8 58 3 4 53 0 1 69 chain 9308 chr12 133851895 + 127052156 127052882 LTR12C 1709 + 913 1464 164029 48 67 67 40 513 338 58 chain 4515 chr12 133851895 + 127052338 127052440 LTR12C 1709 + 657 718 200620 43 41 0 18 chain 6146 chr12 133851895 + 127080628 127080695 L1PA4 6152 + 6084 6151 184025 67 chain 16079 chr12 133851895 + 127087918 127088102 L1PA5 6144 - 5 221 138116 139 0 32 45 chain 40448 chr12 133851895 + 127097460 127097979 LTR10G 522 - 1 522 68666 9 1 0 61 0 2 336 1 0 31 0 2 80 chain 30175 chr12 133851895 + 127102575 127103077 LTR10G 522 - 6 517 84251 4 1 0 61 9 11 70 42 42 215 1 0 20 35 44 44 chain 42842 chr12 133851895 + 127104463 127105043 MER4E1 777 - 0 777 65604 127 10 11 91 5 0 4 3 0 38 0 204 149 9 11 125 2 0 17 chain 349987 chr12 133851895 + 127123040 127127266 L1PA6 6164 - 2 6032 11606 161 6 9 24 11 14 200 5 6 69 0 1 35 7 0 333 1 2 591 10 4 314 0 1 32 0 4 60 0 2 230 4 1801 525 1 3 1352 0 1 126 1 2 128 chain 22724 chr12 133851895 + 127132310 127132586 AluSc 308 - 17 294 116961 249 1 2 26 chain 5927 chr12 133851895 + 127146727 127146802 MLT2B3 573 - 497 572 185926 75 chain 27872 chr12 133851895 + 127167467 127167836 THE1D 372 - 0 372 93449 31 16 17 130 4 6 188 chain 97716 chr12 133851895 + 127167841 127169165 THE1D-int 1627 - 5 1614 37360 378 0 1 23 22 67 366 31 35 288 0 225 92 0 3 68 3 11 26 2 1 25 chain 6634 chr12 133851895 + 127176782 127177049 MLT2B2 565 - 139 464 180211 52 105 166 7 0 1 31 55 51 17 chain 28671 chr12 133851895 + 127177375 127177700 L1PA4 6152 - 11 340 90440 7 0 3 92 0 1 226 chain 88403 chr12 133851895 + 127177706 127178698 L1PA4 6152 + 4782 5774 40220 514 1 0 155 0 1 322 chain 29960 chr12 133851895 + 127199969 127200287 AluYb8 318 - 0 318 84938 318 chain 12612 chr12 133851895 + 127209473 127209681 MER41G 495 - 276 489 149801 17 1 0 4 7 8 69 13 14 24 0 1 47 1 4 25 chain 8658 chr12 133851895 + 127209754 127209858 L1PA5 6144 + 6033 6141 167434 52 0 4 52 chain 7121 chr12 133851895 + 127267995 127268133 MER68B 564 + 168 308 176616 61 2 8 10 26 22 39 chain 36691 chr12 133851895 + 127300773 127301203 L1PA5 6144 - 1 433 73968 158 2 3 170 1 2 99 chain 6498 chr12 133851895 + 127311047 127311127 L1PA16 3655 - 3181 3261 181268 80 chain 37253 chr12 133851895 + 127320271 127320755 MER9a3 513 + 0 508 73166 17 0 2 160 5 6 73 1 0 60 0 21 94 0 1 74 chain 5746 chr12 133851895 + 127342186 127342288 MSTA 426 - 34 155 187673 48 25 44 29 chain 15394 chr12 133851895 + 127347732 127348053 THE1B 368 - 41 368 140217 15 7 6 63 61 67 38 29 30 108 chain 12998 chr12 133851895 + 127353229 127353389 L1PREC2 3366 - 1022 1182 148258 160 chain 29486 chr12 133851895 + 127356269 127356578 AluYb9 318 + 0 309 86689 309 chain 4409 chr12 133851895 + 127370743 127370840 MER84 505 + 407 505 201820 44 34 35 19 chain 18170 chr12 133851895 + 127377578 127377825 L1PA8 5853 + 5608 5853 132408 71 1 0 8 0 1 52 2 1 19 2 1 92 chain 46222 chr12 133851895 + 127384849 127385433 LTR66 600 - 0 600 61831 21 0 1 26 2 0 54 0 16 25 0 1 456 chain 40651 chr12 133851895 + 127387618 127388158 MER41A 554 - 0 543 68370 106 5 1 6 0 4 69 0 1 214 6 8 134 chain 2803 chr12 133851895 + 127398929 127399006 MLT1J1 437 - 8 84 228693 28 32 31 17 chain 24704 chr12 133851895 + 127404968 127405266 AluSc8 310 + 12 309 106411 293 1 0 4 chain 9370 chr12 133851895 + 127428586 127428698 LTR8 732 - 0 112 163713 112 chain 20956 chr12 133851895 + 127430677 127430960 AluSp 311 + 38 309 124077 135 5 4 12 9 0 106 2 0 14 chain 33122 chr12 133851895 + 127431728 127432091 L1PA3long 6157 + 5793 6156 79025 363 chain 79154 chr12 133851895 + 127443223 127444210 LTR5B 1012 - 1 1012 43979 6 0 2 221 7 10 608 11 30 134 chain 88140 chr12 133851895 + 127453195 127454174 L1PA3long 6157 - 2 983 40322 238 7 0 185 0 5 419 0 4 130 chain 16783 chr12 133851895 + 127462877 127463229 L1PB1 5432 - 10 325 136155 18 1 0 13 1 0 21 1 0 5 1 0 19 2 0 14 1 0 5 3 1 18 9 0 12 3 0 15 1 0 45 2 1 14 2 1 42 12 10 9 2 0 3 2 0 12 3 2 5 1 0 23 5 0 7 chain 28807 chr12 133851895 + 127470243 127470620 THE1B 368 - 0 368 89856 91 8 0 101 1 0 176 chain 12904 chr12 133851895 + 127473013 127473303 THE1D 372 + 79 372 148614 44 5 9 17 99 98 125 chain 11831 chr12 133851895 + 127478622 127478768 MLT2A2 560 - 0 146 152903 146 chain 32179 chr12 133851895 + 127485715 127486712 L1PB1 5432 + 4804 5427 80564 34 0 1 79 311 0 46 7 1 42 118 96 10 3 0 25 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 60 14 1 25 29 24 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 2976 chr12 133851895 + 127489766 127489800 MADE1 96 - 61 95 225501 34 chain 10276 chr12 133851895 + 127497673 127497793 L1PA4 6152 - 12 146 159249 11 0 14 109 chain 20156 chr12 133851895 + 127502638 127502851 AluYb8 318 + 105 318 126657 213 chain 17763 chr12 133851895 + 127504559 127504908 L1PB1 5432 - 2 325 133536 10 2 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 20 7 9 1 0 44 10 21 48 2 0 9 2 0 3 2 0 10 1 0 8 1 0 23 5 0 8 chain 22652 chr12 133851895 + 127530479 127530764 AluSq10 312 + 15 298 117313 160 7 5 118 chain 70033 chr12 133851895 + 127532917 127533711 L1PA5 6144 - 3 798 48345 650 0 1 144 chain 72530 chr12 133851895 + 127533711 127534527 L1PA5 6144 + 4510 5327 47252 189 0 1 627 chain 555671 chr12 133851895 + 127579150 127585176 L1PA2 6032 - 3 6031 753 148 0 3 1071 1 0 4298 2 3 250 2 1 254 chain 415665 chr12 133851895 + 127621864 127627052 L1PA8A 6298 - 7 5149 9651 625 21 1 91 17 18 42 0 11 13 2 1 592 12 8 68 2 0 226 0 1 199 0 1 366 25 2 9 0 1 94 1 0 4 0 1 44 0 1 57 0 1 364 0 3 80 1 2 640 0 3 220 0 1 27 1 0 225 0 2 366 4 3 256 1 0 30 5 4 214 22 3 222 chain 14841 chr12 133851895 + 127640343 127640529 HERVH-int 3825 + 3637 3825 141808 6 0 1 149 6 7 25 chain 36235 chr12 133851895 + 127642146 127642604 LTR7C 471 + 0 461 74578 89 9 10 67 0 3 238 1 0 32 0 2 10 2 0 10 chain 12320 chr12 133851895 + 127650472 127650983 LSU-rRNA_Hsa 377 - 16 329 150941 60 3 1 42 312 119 15 1 0 16 1 0 6 5 4 50 chain 22042 chr12 133851895 + 127654081 127654346 AluSp 311 + 29 294 120058 265 chain 29238 chr12 133851895 + 127660442 127660754 AluYa5 310 + 0 310 87861 97 2 0 213 chain 40765 chr12 133851895 + 127666584 127667115 MLT2A2 560 - 0 558 68219 17 1 15 40 1 4 71 3 14 89 1 0 308 chain 45595 chr12 133851895 + 127702508 127703087 LTR12_ 688 - 1 688 62408 155 0 103 157 1 5 123 1 2 142 chain 5943 chr12 133851895 + 127805899 127805970 U1 164 + 0 71 185748 71 chain 78143 chr12 133851895 + 127831016 127832025 MER11A 1151 - 0 1145 44441 8 0 1 263 6 0 20 5 12 12 8 35 53 0 4 52 6 9 143 0 1 94 0 1 149 1 0 120 0 99 69 chain 23007 chr12 133851895 + 127842769 127843054 AluSp 311 - 6 289 115592 173 2 0 110 chain 3837 chr12 133851895 + 127860608 127860655 L1ME1 1623 + 578 625 209823 47 chain 22805 chr12 133851895 + 127861145 127861456 AluY 311 + 1 302 116553 55 4 1 76 2 0 142 0 2 19 7 0 6 chain 7998 chr12 133851895 + 127869616 127869908 L1MD2 1676 - 447 754 171077 46 179 194 67 chain 6767 chr12 133851895 + 127896552 127896666 MER50 708 + 0 118 179190 35 20 24 59 chain 21201 chr12 133851895 + 127919669 127919959 L1PA8 5853 - 0 285 123209 93 1 0 19 2 1 61 2 1 70 2 0 40 chain 5749 chr12 133851895 + 127944159 127944244 MADE1 96 - 0 95 187643 25 7 0 10 0 17 43 chain 27261 chr12 133851895 + 127956023 127956327 L1PA4 6152 - 170 476 95397 206 0 2 98 chain 13908 chr12 133851895 + 127956327 127956492 L1PA4 6152 + 5982 6152 144888 159 0 5 6 chain 33594 chr12 133851895 + 127957348 127957812 MLT2A1 477 + 0 477 78249 61 12 0 108 4 1 212 24 52 43 chain 4823 chr12 133851895 + 127965766 127965825 LTR2 463 + 389 447 197093 19 1 0 39 chain 14603 chr12 133851895 + 127974495 127974709 MLT2A1 477 - 62 263 142575 14 1 0 9 10 0 7 11 9 162 chain 2589 chr12 133851895 + 127974822 127974867 MLT2A1 477 + 426 477 231827 11 3 8 20 0 1 11 chain 16145 chr12 133851895 + 127993006 127993400 L1MA5A 2387 + 1993 2306 137916 26 61 16 51 46 45 24 2 0 32 1 0 28 3 0 15 28 0 66 1 0 10 chain 36523 chr12 133851895 + 128019767 128020450 L1PREC2 3366 - 360 1012 74212 31 140 108 14 3 0 3 1 0 43 2 1 54 2 0 16 20 19 153 1 10 200 chain 33635 chr12 133851895 + 128023090 128023540 MER4A1 472 + 0 472 78194 230 1 22 16 1 0 131 14 16 57 chain 28841 chr12 133851895 + 128037992 128038295 AluYk12 309 - 6 309 89720 303 chain 27343 chr12 133851895 + 128044969 128045343 THE1C 375 + 0 372 95133 122 3 0 64 3 1 37 0 3 88 0 1 17 12 11 28 chain 80572 chr12 133851895 + 128050664 128051606 L1PA6 6164 + 5211 6159 43359 103 1 5 332 0 1 153 0 1 353 chain 12042 chr12 133851895 + 128079512 128079673 MER30 238 + 41 237 152020 58 0 29 25 1 7 77 chain 10314 chr12 133851895 + 128082836 128082980 L1PA8 5853 + 5712 5853 159072 28 2 1 10 1 0 9 1 0 93 chain 23981 chr12 133851895 + 128094338 128094844 LTR21A 479 + 0 479 110439 24 1 0 9 30 0 19 45 40 161 32 12 12 40 68 74 1 0 6 8 10 44 chain 34257 chr12 133851895 + 128094911 128095336 LTR12F 595 + 0 595 77267 80 0 167 57 0 2 50 0 1 238 chain 453726 chr12 133851895 + 128095356 128101026 HERV9-int 5642 + 0 5642 8629 596 4 7 93 22 1 19 6 0 130 2 0 433 1 3 297 31 21 142 1 8 63 0 1 572 0 10 221 0 11 402 1 0 281 7 8 632 1 0 317 0 10 284 19 23 634 12 11 227 8 6 36 2 0 26 1 0 59 1 0 14 34 11 11 11 5 17 chain 31956 chr12 133851895 + 128108054 128108469 MER41B 635 + 0 417 80929 125 1 2 85 7 8 197 chain 22378 chr12 133851895 + 128127595 128127965 MER51B 395 + 0 395 118595 40 54 79 109 7 8 9 1 0 150 chain 13680 chr12 133851895 + 128142450 128142650 MSTA 426 + 214 411 145669 4 1 0 17 2 0 11 11 11 154 chain 25215 chr12 133851895 + 128194200 128194558 THE1B 368 - 3 365 103660 125 3 2 6 1 0 18 0 4 9 0 3 34 2 0 39 16 17 105 chain 9326 chr12 133851895 + 128203478 128203632 THE1C 375 - 224 375 163915 62 32 29 60 chain 5255 chr12 133851895 + 128206752 128206817 MER31B 477 - 410 476 192467 17 0 1 48 chain 38033 chr12 133851895 + 128226112 128226637 MER41A 554 - 7 552 72083 116 0 1 115 7 8 25 6 5 55 8 10 140 0 15 29 0 2 24 chain 23451 chr12 133851895 + 128240670 128241015 THE1B 368 + 2 368 113378 33 5 20 78 1 0 42 1 0 26 4 0 13 0 4 10 7 15 125 chain 32860 chr12 133851895 + 128241069 128241515 MER4A1 472 + 0 472 79437 15 8 10 23 0 3 196 8 29 196 chain 72564 chr12 133851895 + 128242078 128243014 L1PA8 5853 + 4925 5853 47237 14 11 12 59 2 0 554 1 0 44 2 0 22 0 1 46 3 2 9 2 0 52 2 1 13 8 7 92 chain 38444 chr12 133851895 + 128294877 128295394 MLT2A2 560 - 2 560 71522 43 0 2 7 2 1 6 1 0 86 0 11 6 1 0 56 0 32 234 1 0 74 chain 38636 chr12 133851895 + 128301019 128301529 L1PA8 5853 + 5330 5843 71239 52 0 2 180 1 0 44 2 0 36 0 8 23 5 4 11 1 0 50 2 1 18 5 4 80 chain 3265 chr12 133851895 + 128310997 128311031 LTR12_ 688 - 276 310 219689 34 chain 14760 chr12 133851895 + 128320132 128320458 L1PB1 5432 - 12 308 142067 16 1 0 9 5 6 19 2 1 23 17 14 5 2 0 30 14 1 16 1 0 44 1 0 15 2 1 52 2 0 9 17 12 12 1 0 11 chain 17030 chr12 133851895 + 128321354 128321602 L1PA8 5853 - 0 243 135513 58 1 0 35 6 5 14 4 3 47 1 0 10 1 0 71 chain 9071 chr12 133851895 + 128321636 128321741 LTR9 672 - 567 672 165211 105 chain 110853 chr12 133851895 + 128325583 128326820 L1PA3long 6157 + 4916 6157 33981 487 0 1 254 9 12 487 chain 12121 chr12 133851895 + 128343223 128343361 L1PA6 6164 + 5799 5938 151729 32 0 1 106 chain 184930 chr12 133851895 + 128347912 128350396 L1PB1 5432 + 2819 5281 20504 23 5 1 250 0 2 146 8 16 154 0 1 121 6 25 104 3 0 74 13 0 226 0 1 58 20 0 187 0 2 241 0 1 174 4 0 178 1 0 140 0 1 158 16 14 21 0 6 6 20 8 11 3 1 48 24 22 41 chain 545313 chr12 133851895 + 128350402 128356414 L1PA3long 6157 + 0 6146 2035 153 0 1 208 1 2 306 1 2 104 0 128 375 0 2 1045 1 0 260 0 2 3558 chain 2362 chr12 133851895 + 128430201 128430245 MLT1C 463 + 122 167 234681 18 1 0 5 4 6 16 chain 26629 chr12 133851895 + 128435277 128435644 L1PA8 5853 - 0 359 97559 90 8 7 12 2 1 50 7 5 4 1 0 76 2 0 44 1 0 70 chain 22398 chr12 133851895 + 128450972 128451310 THE1B 368 - 0 368 118493 57 9 24 45 0 1 61 20 19 97 5 20 44 chain 25688 chr12 133851895 + 128452855 128453210 THE1B 368 - 0 368 101340 75 1 0 80 0 1 40 12 11 90 1 0 12 0 15 44 chain 67108 chr12 133851895 + 128459597 128460643 L1PB1 5432 - 37 1056 49614 4 1 0 21 1 0 24 2 0 14 1 0 5 2 0 14 7 6 11 11 0 16 1 0 44 1 0 68 16 10 14 15 13 14 16 14 265 29 21 6 0 7 86 0 1 3 0 1 202 4 7 128 chain 49659 chr12 133851895 + 128460643 128461297 L1PB1 5432 + 3759 4377 59050 201 8 9 83 37 0 325 chain 24155 chr12 133851895 + 128462826 128463119 AluY 311 + 8 295 109450 97 0 1 27 7 0 162 chain 88830 chr12 133851895 + 128467743 128469055 LTR12C 1709 + 0 1709 40070 21 0 9 10 50 41 265 14 13 104 0 2 8 5 1 210 7 283 26 0 2 93 0 47 69 24 0 20 11 4 161 1 0 4 1 2 37 0 108 81 16 14 74 chain 12147 chr12 133851895 + 128469055 128469206 THE1A 353 - 202 353 151624 151 chain 21267 chr12 133851895 + 128479988 128480249 L1PA7 6471 - 330 591 122967 261 chain 28023 chr12 133851895 + 128480251 128480571 L1PA7 6471 + 6149 6467 92922 310 2 0 8 chain 34460 chr12 133851895 + 128488891 128489314 LTR2B 499 + 17 441 76978 5 0 1 4 1 0 136 0 1 277 chain 37034 chr12 133851895 + 128504417 128504866 LTR7C 471 - 22 471 73477 175 4 0 53 0 3 110 0 1 107 chain 54600 chr12 133851895 + 128524745 128525511 MER4E 760 + 0 760 55965 150 22 16 64 0 2 101 1 5 206 5 1 6 4 0 54 5 6 62 14 15 72 chain 3121 chr12 133851895 + 128531582 128531621 MLT1C 463 - 368 406 222524 6 1 0 32 chain 4806 chr12 133851895 + 128544197 128544256 L1MA5A 2387 - 95 155 197296 29 0 1 30 chain 3511 chr12 133851895 + 128561827 128561887 MSTB 430 - 123 182 215200 14 7 6 39 chain 10455 chr12 133851895 + 128577535 128577701 MER30 238 - 0 180 158471 32 10 7 67 8 25 49 chain 11654 chr12 133851895 + 128600593 128600755 L1PA8 5853 - 4 164 153672 89 1 0 19 8 7 45 chain 19595 chr12 133851895 + 128600779 128601020 L1PA8 5853 + 5435 5673 128399 129 1 0 44 2 0 65 chain 17806 chr12 133851895 + 128620762 128621373 Tigger2 2703 - 68 370 133391 13 7 8 33 348 41 166 3 0 41 chain 24640 chr12 133851895 + 128637610 128638021 MSTB 430 - 4 430 106781 14 0 2 163 4 5 26 28 39 35 16 17 24 18 18 83 chain 44439 chr12 133851895 + 128656984 128657533 MLT2A2 560 - 0 560 63649 143 0 11 406 chain 10212 chr12 133851895 + 128658021 128658165 MLT2A2 560 - 0 143 159562 122 6 5 16 chain 31774 chr12 133851895 + 128658166 128658571 MLT2A2 560 - 155 560 81208 222 1 0 39 0 1 143 chain 42194 chr12 133851895 + 128665593 128666147 MLT2A2 560 - 0 560 66401 54 1 0 8 0 1 84 0 11 139 5 0 21 0 1 61 1 0 180 chain 2747 chr12 133851895 + 128708069 128708104 LTR51 675 + 4 40 229526 20 0 1 15 chain 41674 chr12 133851895 + 128708869 128709418 MER41A 554 + 0 554 67065 87 1 2 245 2 0 96 0 1 22 0 6 7 6 5 83 chain 2653 chr12 133851895 + 128718804 128718841 LTR66 600 + 459 495 230986 17 1 0 19 chain 42747 chr12 133851895 + 128722565 128723114 MER41A 554 + 0 554 65723 84 1 5 68 3 4 393 chain 3517 chr12 133851895 + 128732326 128732368 LTR12C 1709 + 795 837 215114 42 chain 13160 chr12 133851895 + 128739656 128739804 L1PA4 6152 + 6004 6152 147611 148 chain 3082 chr12 133851895 + 128747951 128747997 MIRc 230 + 83 126 223296 13 3 0 30 chain 19234 chr12 133851895 + 128766815 128767194 THE1D 372 - 0 372 129427 33 4 3 125 39 45 36 42 33 36 0 2 5 2 0 9 8 5 40 chain 3995 chr12 133851895 + 128768752 128768797 MLT2B2 565 + 520 565 207461 45 chain 4078 chr12 133851895 + 128797259 128797307 MLT1C 463 + 343 391 206214 48 chain 21546 chr12 133851895 + 128813062 128813318 AluSg 306 + 11 267 121980 256 chain 22910 chr12 133851895 + 128816085 128816415 L1PB4 2604 - 130 454 116062 44 1 0 4 0 1 48 8 0 47 8 10 170 chain 15874 chr12 133851895 + 128831846 128832432 L1PB2 3958 - 120 365 138726 59 367 28 69 2 1 64 1 0 24 chain 4189 chr12 133851895 + 128837047 128837149 MLT2D 439 - 314 428 204711 29 3 18 11 9 0 23 12 18 15 chain 15661 chr12 133851895 + 128877228 128877459 MER30 238 - 0 238 139395 39 3 0 78 16 26 5 1 0 6 0 1 83 chain 14681 chr12 133851895 + 128880861 128881113 L1PA8 5853 + 5622 5851 142320 53 5 4 10 1 0 4 1 0 9 0 1 5 26 6 6 0 1 19 2 1 19 1 0 91 chain 14611 chr12 133851895 + 128914878 128915074 MER57F 435 + 9 205 142550 5 0 1 140 2 1 49 chain 172295 chr12 133851895 + 128919876 128921844 L1PA6 6164 + 4184 6158 21783 186 0 4 269 1 0 140 6 0 7 0 5 519 1 5 839 chain 27394 chr12 133851895 + 128932252 128932541 AluYb8 318 - 0 289 94992 289 chain 23316 chr12 133851895 + 128933443 128933709 AluY 311 + 43 310 114122 89 0 1 177 chain 5770 chr12 133851895 + 128934730 128934821 MER3 215 + 113 211 187439 54 8 15 29 chain 50534 chr12 133851895 + 128966526 128967282 L1P1 4361 - 297 982 58625 18 0 7 280 81 1 62 21 20 209 3 6 82 chain 543688 chr12 133851895 + 128976397 128982513 L1PA5 6144 - 0 6144 2244 1007 0 1 46 0 1 798 0 1 613 0 2 45 0 1 383 0 3 299 0 2 144 0 7 381 0 4 1182 1 2 524 0 1 542 0 4 151 chain 19511 chr12 133851895 + 129005229 129005557 LTR19B 566 - 0 332 128623 51 0 3 14 23 32 9 0 12 108 39 19 84 chain 9892 chr12 133851895 + 129005906 129006027 L1PA6 6164 - 61 175 161111 80 7 0 34 chain 85874 chr12 133851895 + 129019768 129021082 L1PA6 6164 + 5139 6162 41202 281 0 1 72 303 0 605 0 10 11 0 1 42 chain 6546 chr12 133851895 + 129031357 129031438 MLT1D 503 - 390 472 180875 32 0 1 49 chain 12668 chr12 133851895 + 129037596 129037818 MER30 238 - 0 238 149578 45 0 3 5 1 0 47 2 0 5 8 26 71 23 21 15 chain 21236 chr12 133851895 + 129042802 129043157 THE1B 368 + 8 368 123073 154 42 47 4 0 1 18 1 0 10 1 0 62 17 18 46 chain 10402 chr12 133851895 + 129048404 129048533 MER85 139 - 0 139 158685 40 1 11 88 chain 66602 chr12 133851895 + 129057414 129058148 L1PA5 6144 + 5401 6135 49828 734 chain 18284 chr12 133851895 + 129064752 129064971 AluY 311 + 73 288 132115 45 5 0 14 0 1 155 chain 25546 chr12 133851895 + 129067004 129067352 THE1A 353 + 0 347 102014 15 2 0 31 1 2 63 0 2 6 8 6 222 chain 23851 chr12 133851895 + 129084344 129085021 THE1C 375 + 0 350 111182 125 3 0 32 327 0 28 3 2 37 22 25 49 0 1 51 chain 6078 chr12 133851895 + 129107889 129107956 L1PA5 6144 + 6065 6132 184592 67 chain 5074 chr12 133851895 + 129108740 129108801 MIR 256 + 74 135 194361 61 chain 23631 chr12 133851895 + 129109955 129110321 THE1B 368 - 0 368 112412 40 14 22 111 19 11 6 0 2 56 2 0 6 0 3 8 2 1 102 chain 32532 chr12 133851895 + 129203435 129203882 L1PA8 5853 - 0 439 79971 41 1 0 52 1 0 19 2 1 52 1 0 9 4 3 67 3 1 46 1 0 148 chain 11688 chr12 133851895 + 129206136 129206332 THE1D 372 + 148 357 153529 37 41 54 118 chain 41114 chr12 133851895 + 129210724 129211486 MER41A 554 - 0 532 67757 53 1 3 197 1 0 84 5 4 55 230 0 136 chain 5265 chr12 133851895 + 129211262 129211350 MER50 708 - 374 459 191137 33 15 12 40 chain 28525 chr12 133851895 + 129223931 129224297 THE1B 368 - 0 368 91077 199 1 0 124 0 5 27 4 2 11 chain 25833 chr12 133851895 + 129263008 129263371 THE1B 368 - 0 368 100736 65 1 0 60 2 1 12 1 0 12 0 4 14 5 10 21 1 0 169 chain 25449 chr12 133851895 + 129273398 129273694 AluSp 311 + 1 298 102460 140 0 1 156 chain 2979 chr12 133851895 + 129280026 129280061 MIR 256 + 104 140 225459 7 0 1 28 chain 23071 chr12 133851895 + 129317665 129317936 AluY 311 + 0 286 115290 22 0 14 96 0 1 153 chain 4165 chr12 133851895 + 129319213 129320641 L1MA3 4352 + 3060 3557 154744 83 1305 374 40 chain 44905 chr12 133851895 + 129320742 129321255 MER9a1 513 + 0 513 63169 513 chain 493 chr12 133851895 + 129322949 129323118 L1MA3 4352 + 4134 4306 154744 17 12 23 61 4 0 23 2 0 24 1 0 6 2 1 17 chain 44378 chr12 133851895 + 129334264 129334816 MER41A 554 - 0 554 63718 126 0 1 29 0 1 158 1 0 159 1 2 78 chain 41454 chr12 133851895 + 129340129 129340985 MER41A 554 - 7 554 67343 73 1 6 87 314 0 100 0 1 140 1 0 140 chain 59569 chr12 133851895 + 129342663 129343744 MER4E1 777 + 0 770 53070 24 0 1 33 0 1 186 1 0 23 301 0 217 2 1 50 19 9 5 2 0 191 0 2 27 chain 23893 chr12 133851895 + 129367471 129367768 AluSc5 308 - 13 308 110943 5 2 0 82 1 0 99 0 1 108 chain 18440 chr12 133851895 + 129429365 129429586 L1PA6 6164 - 20 242 131673 140 1 2 80 chain 43073 chr12 133851895 + 129463147 129463694 MER41A 554 - 0 554 65330 80 0 5 67 4 5 28 0 1 368 chain 6664 chr12 133851895 + 129470371 129470471 L1PB4 2604 - 140 237 179955 75 0 1 3 4 0 18 chain 13610 chr12 133851895 + 129479691 129479856 MER61A 341 + 176 341 145937 165 chain 547233 chr12 133851895 + 129522103 129528240 L1PA4 6152 - 1 6149 1800 651 0 1 1377 0 1 883 0 4 283 0 2 225 0 3 739 3 0 527 0 4 519 0 4 347 1 0 45 4 0 533 chain 548087 chr12 133851895 + 129540429 129546596 L1PA4 6152 - 0 6150 1697 6 0 2 748 0 3 560 6 0 62 0 1 1516 0 4 294 17 0 248 0 5 6 5 0 384 1 0 331 3 0 1980 chain 7455 chr12 133851895 + 129552666 129552773 MLT1C 463 + 29 131 174422 95 5 0 7 chain 174758 chr12 133851895 + 129577792 129579737 L1PA4 6152 + 4202 6151 21500 569 0 1 56 0 3 1320 chain 166556 chr12 133851895 + 129588258 129590098 L1PA3long 6157 + 4316 6157 22453 4 0 1 1836 chain 76525 chr12 133851895 + 129590112 129590971 L1PA3long 6157 + 5297 6157 45199 703 5 6 151 chain 21919 chr12 133851895 + 129612805 129613170 THE1D 372 - 0 372 120550 122 83 90 160 chain 3438 chr12 133851895 + 129617887 129617971 L1MB1 2102 + 1846 1929 216433 25 30 29 29 chain 2362 chr12 133851895 + 129621717 129621809 HAL1-2a_MD 234 + 90 159 234688 18 3 0 11 3 0 6 7 4 9 21 0 8 0 7 6 chain 12721 chr12 133851895 + 129630368 129630533 MER107 203 + 0 186 149369 41 0 18 104 3 0 10 0 6 7 chain 27277 chr12 133851895 + 129633571 129633938 L1PA8 5853 + 5493 5853 95348 71 1 0 45 2 0 70 1 0 8 2 1 51 3 2 19 1 0 93 chain 2813 chr12 133851895 + 129653331 129653388 MER20 218 - 160 218 228580 27 14 15 16 chain 96751 chr12 133851895 + 129658675 129659837 L1PA8A 6298 - 8 1176 37632 662 0 1 136 0 3 290 0 2 74 chain 3274 chr12 133851895 + 129671131 129671206 MIR 256 + 26 132 219465 22 28 59 25 chain 20645 chr12 133851895 + 129684140 129684477 THE1B 368 - 27 368 125144 29 7 6 38 0 1 14 50 55 29 1 0 169 chain 19810 chr12 133851895 + 129703653 129703979 THE1B 368 + 0 366 127782 15 2 0 32 17 23 99 13 12 17 0 3 13 0 4 6 12 42 100 chain 4612 chr12 133851895 + 129707899 129707955 MLT1G3 592 + 265 321 199497 56 chain 31169 chr12 133851895 + 129712152 129712514 L1PA5 6144 - 7 370 82223 324 0 1 38 chain 60701 chr12 133851895 + 129737059 129737747 L1PA4 6152 + 5463 6152 52473 37 0 1 397 1 0 110 0 1 143 chain 15452 chr12 133851895 + 129745435 129745690 L1PB2 3958 - 120 373 140049 18 0 3 42 5 4 18 12 10 64 1 0 58 6 5 31 chain 35958 chr12 133851895 + 129748969 129749602 L1PB1 5432 + 4821 5424 74948 73 0 1 134 24 24 50 1 2 9 1 0 20 1 0 13 30 23 49 1 0 18 1 0 44 1 0 11 19 7 27 9 6 14 2 0 24 1 0 16 0 1 4 1 0 12 2 1 16 1 0 4 chain 174417 chr12 133851895 + 129751733 129753716 L1PA4 6152 + 4143 6143 21548 342 0 2 178 1 0 939 0 17 197 2 1 324 chain 51489 chr12 133851895 + 129755951 129756603 L1PA8 5853 - 0 644 57977 93 1 0 17 1 0 55 6 4 76 2 0 44 1 0 321 1 0 34 chain 3384 chr12 133851895 + 129783274 129783310 L1MA6 2487 - 108 144 217388 36 chain 25017 chr12 133851895 + 129795504 129795771 AluY 311 + 43 311 104695 89 0 1 178 chain 37235 chr12 133851895 + 129824854 129825294 L1PA5 6144 - 0 514 73192 422 4 78 14 chain 6251 chr12 133851895 + 129825294 129825362 L1PA5 6144 + 5644 5712 170054 68 chain 2014 chr12 133851895 + 129826036 129826203 MER41C 542 + 15 184 78793 33 0 2 134 chain 166436 chr12 133851895 + 129826274 129828130 L1PA4 6152 + 4293 6151 22466 568 1 2 1175 0 1 112 chain 3583 chr12 133851895 + 129828496 129828793 MER41C 542 + 224 542 78793 79 6 27 212 chain 68360 chr12 133851895 + 129830256 129831093 L1PA8 5853 - 2272 3110 49100 194 6 5 441 5 7 4 0 1 41 1 0 145 chain 178196 chr12 133851895 + 129831093 129833264 L1PA8 5853 + 3683 5853 21147 226 7 9 416 1 0 338 1 0 337 0 2 71 0 2 480 1 0 46 2 0 69 1 0 61 2 1 19 1 0 23 3 4 66 chain 10447 chr12 133851895 + 129837485 129837607 MER41C 542 + 419 541 158506 122 chain 29131 chr12 133851895 + 129840692 129841001 AluYa5 310 - 2 310 88406 182 1 0 126 chain 5914 chr12 133851895 + 129856567 129856639 MLT2B2 565 + 68 140 186061 72 chain 15656 chr12 133851895 + 129884898 129885098 MER107 203 - 0 203 139410 15 9 12 176 chain 97451 chr12 133851895 + 129900600 129901766 L1PA8 5853 - 1496 2672 37340 299 0 4 343 1 11 312 5 0 175 0 1 31 chain 123057 chr12 133851895 + 129901766 129903267 L1PA8 5853 + 4366 5849 30025 227 1 0 230 0 1 4 2 0 182 0 1 170 0 1 79 16 4 213 0 1 85 1 0 46 3 1 71 1 0 8 1 0 50 2 1 19 1 0 89 chain 23437 chr12 133851895 + 129909003 129909277 AluY 311 + 40 307 113435 78 7 0 189 chain 20974 chr12 133851895 + 129911872 129912112 L1PA4 6152 + 5912 6152 124016 240 chain 78075 chr12 133851895 + 129914143 129915020 L1PA4 6152 - 13 900 44478 216 0 2 615 0 8 46 chain 45253 chr12 133851895 + 129922283 129922847 L1PA7 6471 - 1 560 62765 4 1 0 7 2 0 283 1 2 82 9 6 175 chain 60828 chr12 133851895 + 129941471 129942147 L1PA4 6152 + 5477 6152 52417 519 0 6 9 7 0 141 chain 14108 chr12 133851895 + 129942148 129942477 MSTA 426 - 59 426 144181 28 25 46 36 1 0 5 41 35 80 47 71 66 chain 158343 chr12 133851895 + 129948020 129949779 L1PA4 6152 - 0 1764 23551 850 0 4 687 0 1 222 chain 40527 chr12 133851895 + 129949779 129950233 L1PA4 6152 + 3926 4380 68295 304 0 1 131 1 0 18 chain 3597 chr12 133851895 + 129956809 129956849 L1PA8 5853 + 5524 5564 213700 40 chain 3474 chr12 133851895 + 129956850 129956894 L1PA8 5853 + 5564 5608 215747 44 chain 5629 chr12 133851895 + 129956896 129956961 L1PA8 5853 + 5608 5675 188768 51 0 2 14 chain 4245 chr12 133851895 + 129956966 129957028 L1PA8 5853 + 5679 5740 203939 10 2 0 11 0 1 39 chain 9138 chr12 133851895 + 129957030 129957143 L1PA8 5853 + 5741 5853 164867 19 1 0 93 chain 24641 chr12 133851895 + 129972217 129972508 AluY 311 + 22 309 106770 56 4 0 231 chain 132200 chr12 133851895 + 129988809 129990796 L1PBa 3878 - 706 2420 27590 112 5 8 127 0 18 106 0 5 88 0 3 61 0 5 49 2 3 425 311 0 45 0 3 499 0 1 5 5 4 147 chain 111946 chr12 133851895 + 129990796 129992391 L1PB1 5432 + 3859 5420 33659 438 3 2 24 10 11 151 1 2 48 0 2 89 3 0 183 3 0 289 24 25 13 1 0 10 1 0 11 6 2 8 2 0 53 2 1 10 10 9 37 12 11 8 3 0 3 10 0 28 8 5 16 2 0 22 1 0 21 1 0 13 1 0 16 chain 19608 chr12 133851895 + 129995339 129995585 L1MA2 4263 - 1084 1330 128365 246 chain 20764 chr12 133851895 + 130000880 130001236 THE1B 368 - 0 368 124736 60 1 0 65 7 15 14 0 1 4 37 32 59 6 7 85 4 12 14 chain 19345 chr12 133851895 + 130008567 130008785 L1PA4 6152 + 5932 6151 129089 214 0 1 4 chain 5102 chr12 133851895 + 130023716 130023779 MER44D 709 - 559 622 194064 63 chain 19821 chr12 133851895 + 130033590 130034209 THE1B 368 + 0 353 127748 108 13 15 45 331 65 7 1 0 66 7 6 41 chain 12048 chr12 133851895 + 130033853 130034019 THE1B 368 + 0 168 151993 107 14 16 45 chain 8235 chr12 133851895 + 130059689 130059858 Tigger2 2703 + 2473 2647 169755 12 9 12 65 35 37 48 chain 28985 chr12 133851895 + 130060306 130060618 AluYa5 310 - 0 310 89069 217 2 0 93 chain 19070 chr12 133851895 + 130073629 130073990 THE1B 368 + 0 368 129905 71 1 2 35 8 9 52 75 81 56 8 7 55 chain 63690 chr12 133851895 + 130088066 130088878 L1PA8 5853 + 5046 5853 51143 475 0 3 40 6 5 39 2 0 71 1 0 10 1 0 18 1 0 16 20 19 18 1 0 93 chain 30083 chr12 133851895 + 130100998 130101377 THE1C 375 + 0 375 84548 125 3 0 224 1 0 26 chain 36894 chr12 133851895 + 130125232 130125751 MER1A 529 + 0 522 73670 18 1 7 377 5 6 19 38 34 61 chain 18115 chr12 133851895 + 130128110 130128332 MER4A1 472 + 0 224 132552 85 0 2 137 chain 24872 chr12 133851895 + 130159732 130160078 L1PA8 5853 + 5506 5847 105503 15 0 2 38 5 4 43 2 0 74 1 0 6 1 0 50 8 7 15 1 0 87 chain 18295 chr12 133851895 + 130167160 130167382 AluY 311 + 38 261 132088 91 5 6 126 chain 27740 chr12 133851895 + 130170741 130171121 THE1C 375 + 0 375 93906 90 18 19 14 8 0 62 0 2 188 chain 22696 chr12 133851895 + 130178966 130179271 MER57A1 433 + 0 308 117097 36 10 12 240 1 2 18 chain 3801 chr12 133851895 + 130194400 130194485 Kanga1a 723 - 30 131 210384 25 7 22 11 12 13 30 chain 25466 chr12 133851895 + 130227809 130228154 THE1C 375 + 32 375 102371 93 10 7 162 0 2 53 1 0 26 chain 20762 chr12 133851895 + 130229387 130229740 THE1D 372 + 0 348 124745 46 10 1 53 0 1 62 2 1 20 52 56 108 chain 23923 chr12 133851895 + 130245209 130245530 L1PA8 5853 - 6 321 110793 87 1 0 19 2 1 39 8 7 84 2 0 48 1 0 30 chain 5386 chr12 133851895 + 130273974 130274048 L1PB2 3958 + 3756 3829 191130 18 2 1 54 chain 28699 chr12 133851895 + 130281071 130281435 L1PA7 6471 + 6109 6466 90331 28 6 4 313 5 0 12 chain 539819 chr12 133851895 + 130285252 130291243 L1PA3long 6157 + 4 6152 2844 148 0 1 209 1 2 162 4 0 60 0 27 57 1 2 10 0 3 92 1 129 5246 chain 23467 chr12 133851895 + 130345181 130345560 THE1C 375 - 0 375 113281 52 3 1 90 44 38 12 0 3 88 10 11 80 chain 31963 chr12 133851895 + 130350779 130351144 L1PA4 6152 + 5782 6148 80914 256 0 1 109 chain 25784 chr12 133851895 + 130371242 130371612 THE1C 375 + 0 375 100941 125 3 0 17 7 11 18 0 1 54 20 23 126 chain 9429 chr12 133851895 + 130415183 130415284 L1PA4 6152 - 381 482 163415 101 chain 33210 chr12 133851895 + 130415284 130415656 L1PA4 6152 + 5769 6143 78861 48 0 1 195 0 1 129 chain 25663 chr12 133851895 + 130418665 130419020 THE1B 368 + 0 368 101441 42 8 23 107 3 2 109 9 8 77 chain 16965 chr12 133851895 + 130432495 130432727 THE1C 375 + 10 243 135684 176 8 9 48 chain 24989 chr12 133851895 + 130440641 130440934 AluY 311 + 8 305 104859 56 0 3 65 0 1 172 chain 16760 chr12 133851895 + 130462066 130462251 L1PA5 6144 - 2 187 136231 185 chain 7637 chr12 133851895 + 130462251 130462333 L1PA5 6144 + 5857 5939 173311 82 chain 3467 chr12 133851895 + 130480445 130480497 L1M 172 + 1 51 215845 37 3 1 12 chain 132642 chr12 133851895 + 130506416 130507963 LTR12C 1709 + 0 1709 27489 837 1 0 75 0 162 37 1 0 5 3 1 107 0 4 481 chain 31221 chr12 133851895 + 130521856 130522238 MER41A 554 - 170 554 82120 200 0 1 88 0 1 94 chain 28113 chr12 133851895 + 130547962 130548320 THE1C 375 + 0 363 92595 88 0 1 50 2 6 218 chain 26039 chr12 133851895 + 130574820 130575177 THE1B 368 - 12 368 99863 63 1 0 119 3 2 62 17 18 92 chain 5267 chr12 133851895 + 130597626 130597692 MER74A 558 + 448 518 192351 20 0 4 46 chain 13843 chr12 133851895 + 130608219 130608435 MER30 238 - 6 238 145089 30 5 13 70 4 14 5 2 0 70 1 0 4 1 2 24 chain 4678 chr12 133851895 + 130631263 130631319 MER58A 224 - 125 181 198779 56 chain 26634 chr12 133851895 + 130664613 130665025 MLT2A1 477 - 9 477 97538 30 4 0 8 7 45 17 7 17 56 22 35 55 0 1 24 0 1 5 11 8 166 chain 50370 chr12 133851895 + 130675002 130675606 L1PA5 6144 + 5543 6142 58735 8 2 0 259 0 1 324 4 0 7 chain 35629 chr12 133851895 + 130695658 130696131 L1PA8 5853 - 0 467 75368 92 2 1 19 12 11 40 1 0 11 2 1 12 0 1 57 2 0 44 1 0 178 chain 20900 chr12 133851895 + 130696131 130696375 L1PA8 5853 + 5132 5376 124275 244 chain 48620 chr12 133851895 + 130702522 130703084 L1PA5 6144 - 0 572 60017 11 1 4 225 0 7 325 chain 7544 chr12 133851895 + 130716758 130716878 MSTB 430 + 306 415 173906 57 8 0 11 5 0 8 0 2 31 chain 6689 chr12 133851895 + 130722306 130722416 L1P4 1494 + 1303 1410 179762 46 6 5 33 8 6 17 chain 130020 chr12 133851895 + 130740260 130741764 LTR12C 1709 - 0 1709 28084 481 0 4 113 1 0 35 0 2 37 0 200 837 chain 64304 chr12 133851895 + 130899397 130900504 L1PA16 3655 + 988 1997 50881 84 23 76 10 0 1 120 0 2 199 0 1 30 0 1 42 3 0 28 5 6 6 1 0 127 11 15 50 155 0 9 1 0 74 24 25 55 4 2 46 chain 3463 chr12 133851895 + 131007797 131007837 MLT1A 405 + 217 257 215936 40 chain 127099 chr12 133851895 + 131071029 131072387 L1PA2 6032 + 4674 6032 28790 1358 chain 23301 chr12 133851895 + 131084732 131085346 LTR19A 502 + 0 419 114198 33 39 38 102 262 68 178 chain 2219 chr12 133851895 + 131084912 131084935 LTR19A 502 + 253 276 236357 23 chain 4639 chr12 133851895 + 131089063 131089115 Tigger3b 1229 + 881 933 199208 52 chain 10975 chr12 133851895 + 131107801 131107967 L1PA8 5853 - 0 165 156292 89 5 4 19 7 6 40 0 1 6 chain 25701 chr12 133851895 + 131133203 131133491 AluSp 311 - 14 302 101285 288 chain 5829 chr12 133851895 + 131141796 131141880 MLT1C 463 - 343 428 186870 14 4 5 66 chain 38608 chr12 133851895 + 131168013 131168502 MER41A 554 + 0 496 71283 167 0 1 262 0 1 38 1 6 21 chain 102675 chr12 133851895 + 131183153 131184283 L1PA4 6152 + 5018 6151 36082 470 1 4 659 chain 241377 chr12 133851895 + 131206611 131210363 L1PA14 3548 + 94 3485 16701 54 6 0 69 1 0 18 1 3 20 13 10 5 0 1 23 4 2 63 8 10 236 7 5 21 0 1 34 7 14 310 10 18 139 9 8 56 2 0 25 0 1 63 10 5 136 43 32 64 4 6 16 0 1 199 10 8 191 6 5 404 10 0 132 306 0 33 2 1 151 5 3 248 7 4 11 2 0 46 3 1 5 2 0 48 5 0 59 11 7 12 2 0 6 1 0 12 3 6 66 1 0 158 4 2 10 2 1 6 1 0 17 1 0 40 6 0 10 1 0 20 chain 30853 chr12 133851895 + 131222790 131223177 L1PA7 6471 - 10 390 82764 36 14 1 107 1 0 6 1 2 27 0 6 195 chain 15652 chr12 133851895 + 131225692 131226026 THE1B 368 + 0 368 139425 17 0 1 64 82 113 5 1 0 14 0 4 6 29 28 116 chain 7352 chr12 133851895 + 131242135 131242223 MSTB 430 + 7 96 175077 79 0 1 9 chain 13134 chr12 133851895 + 131252649 131252812 MER50 708 + 530 693 147710 163 chain 6383 chr12 133851895 + 131256746 131256822 MSTB1 431 - 19 95 182159 76 chain 3969 chr12 133851895 + 131286608 131286656 L1MB8 1703 + 1319 1367 207850 48 chain 6031 chr12 133851895 + 131292323 131292412 MER4C 627 + 0 89 184969 51 1 2 30 1 0 6 chain 8834 chr12 133851895 + 131307304 131307432 MER85 139 - 0 139 166470 24 8 19 96 chain 88362 chr12 133851895 + 131325724 131327052 MER11B 1079 + 1 1063 40241 263 3 0 308 280 23 177 6 0 291 chain 5879 chr12 133851895 + 131354304 131354371 U6 107 - 29 96 186372 67 chain 5736 chr12 133851895 + 131391395 131391492 HY1 111 + 13 111 187769 44 18 19 35 chain 36188 chr12 133851895 + 131422169 131422594 L1PA6 6164 + 5729 6162 74646 305 0 8 120 chain 3806 chr12 133851895 + 131429578 131429624 L1MEf 1413 - 426 472 210287 46 chain 40968 chr12 133851895 + 131453819 131454345 MER1A 529 + 0 529 67958 338 0 1 112 14 16 62 chain 176010 chr12 133851895 + 131480305 131482770 SVA_D 2077 - 0 2077 21354 12 2 0 91 16 0 353 0 1 180 125 0 20 78 0 19 9 8 4 0 1 350 0 2 29 50 22 4 1 0 34 10 0 29 2 0 18 163 4 707 0 30 159 chain 7556 chr12 133851895 + 131480959 131481083 SVA_D 2077 - 735 860 62601 1 0 1 123 chain 4753 chr12 133851895 + 131481104 131481182 SVA_D 2077 - 882 960 62601 78 chain 2742 chr12 133851895 + 131481598 131481643 SVA_D 2077 - 1286 1331 62601 45 chain 6377 chr12 133851895 + 131481755 131481848 SVA_D 2077 - 886 979 71285 93 chain 4518 chr12 133851895 + 131542991 131543064 L1MDa 1598 - 250 323 200575 15 7 7 51 chain 6296 chr12 133851895 + 131651575 131651779 MLT1E2 623 + 366 598 182841 48 84 109 23 21 24 28 chain 36341 chr12 133851895 + 131658502 131658959 MER75 514 + 54 513 74445 366 0 4 64 2 0 25 chain 36180 chr12 133851895 + 131664069 131664510 L1PA7 6471 + 6026 6468 74661 136 7 8 66 0 1 82 1 0 149 chain 11681 chr12 133851895 + 131670773 131671248 L1MA6 2487 + 1790 2277 153553 40 140 133 18 34 67 7 0 1 4 1 0 7 3 0 47 7 10 44 34 38 16 41 23 32 chain 4921 chr12 133851895 + 131672654 131672714 L1MB5 1630 + 1099 1159 196035 60 chain 28552 chr12 133851895 + 131673863 131674218 THE1A 353 - 0 353 90947 155 1 0 88 1 0 110 chain 135817 chr12 133851895 + 131712173 131713857 LTR12C 1709 + 0 1709 26878 749 45 6 40 0 81 198 0 2 21 1 0 11 6 5 5 2 0 106 0 4 16 21 1 195 0 1 268 chain 2434 chr12 133851895 + 131712922 131712967 LTR12C 1709 + 1027 1072 126117 45 chain 41294 chr12 133851895 + 131726511 131727155 LTR10E 629 - 0 629 67539 6 1 0 38 26 24 4 1 0 6 1 0 252 6 5 44 1 19 64 5 7 60 37 8 92 chain 20270 chr12 133851895 + 131738160 131738531 THE1D 372 + 0 357 126314 25 3 0 51 15 0 6 4 0 61 7 13 24 41 44 115 2 1 17 chain 29950 chr12 133851895 + 131740452 131740766 AluYb8 318 - 4 318 84966 314 chain 24653 chr12 133851895 + 131766032 131766305 AluYg6 310 + 36 304 106705 250 5 0 18 chain 4858 chr12 133851895 + 131784205 131784296 5S 121 - 29 121 196690 55 24 25 12 chain 34420 chr12 133851895 + 131803232 131803678 MER4A1 472 - 0 472 77031 224 1 22 173 0 6 17 7 6 24 chain 198547 chr12 133851895 + 131803686 131806334 MER4-int 2692 - 0 2691 19316 11 1 0 187 0 1 104 4 6 101 20 6 5 0 1 29 0 1 9 0 1 108 1 0 12 5 6 60 0 36 248 1 0 307 1 0 29 3 0 5 6 1 242 1 2 29 0 1 126 0 11 30 0 1 136 1 8 20 8 6 9 0 13 58 11 8 507 1 5 88 5 0 19 2 0 14 0 2 47 2 0 11 1 2 12 1 0 10 chain 35970 chr12 133851895 + 131819415 131819932 LTR12F 595 + 0 584 74930 103 1 2 42 8 39 23 6 39 39 20 22 275 chain 383854 chr12 133851895 + 131819975 131824656 HERV9-int 5642 + 12 4694 10644 445 0 1 13 0 6 107 0 1 11 10 4 68 0 10 19 21 0 16 7 5 130 4 2 52 11 11 188 14 10 1196 0 3 258 0 7 361 0 1 5 0 2 75 0 1 13 7 3 171 0 1 156 0 3 488 0 5 153 4 2 445 1 2 232 chain 49732 chr12 133851895 + 131826491 131827077 LTR12_ 688 - 0 688 59207 175 1 103 410 chain 38013 chr12 133851895 + 131834675 131835479 LTR15 485 - 10 482 72113 12 0 2 58 1 0 5 1 2 54 11 0 59 1 5 211 327 0 64 chain 27001 chr12 133851895 + 131835105 131835415 AluYc3 301 - 0 301 96282 189 10 1 111 chain 3117 chr12 133851895 + 131880644 131880726 HAL1-2a_MD 234 - 184 225 222607 24 41 0 17 chain 117995 chr12 133851895 + 131881642 131883199 THE1D-int 1627 - 36 1602 31807 238 0 1 11 14 24 17 0 3 458 4 0 228 31 27 37 1 0 6 0 1 102 7 9 398 0 1 5 chain 3393 chr12 133851895 + 131909109 131909171 L1MCc 1008 + 559 622 217224 37 9 10 16 chain 25105 chr12 133851895 + 131920752 131921115 THE1B 368 - 0 367 104259 118 9 8 12 5 4 12 15 22 23 1 0 168 chain 2910 chr12 133851895 + 131941298 131941328 MER68B 564 - 312 342 226885 30 chain 5759 chr12 133851895 + 131985692 131985764 MER2 342 + 141 213 187556 72 chain 251600 chr12 133851895 + 131987253 131990029 L1PA5 6144 - 15 2796 16141 1784 0 4 86 0 1 906 chain 26577 chr12 133851895 + 131997241 131997614 MLT2A1 477 + 0 385 97736 166 11 8 5 0 1 24 0 1 55 22 35 90 chain 20739 chr12 133851895 + 132000518 132000893 THE1D 372 + 0 372 124823 57 46 39 73 31 35 20 1 0 82 4 5 61 chain 78113 chr12 133851895 + 132000995 132001915 LTR13A 966 - 34 966 44454 58 0 5 237 0 2 126 0 5 499 chain 26894 chr12 133851895 + 132006936 132007309 L1PA11 4918 - 501 889 96649 10 2 0 13 2 1 15 10 8 45 4 24 272 chain 3796 chr12 133851895 + 132015340 132015386 MSTD 398 - 0 46 210441 46 chain 4227 chr12 133851895 + 132024201 132024544 HAL1-2a_MD 234 - 124 234 204209 23 19 13 18 35 11 17 182 0 12 21 0 16 chain 38002 chr12 133851895 + 132035912 132036422 MER41C 542 - 1 542 72130 113 12 17 79 0 21 74 3 6 183 0 2 46 chain 15380 chr12 133851895 + 132069978 132070160 L1PA4 6152 + 5967 6151 140261 34 1 3 147 chain 11424 chr12 133851895 + 132078713 132078937 LTR73 568 - 1 224 154587 46 7 1 34 0 4 39 51 52 47 chain 44241 chr12 133851895 + 132109852 132110355 LTR6B 557 + 0 557 63893 38 0 46 456 0 8 9 chain 4364 chr12 133851895 + 132141878 132141956 HAL1-2a_MD 234 - 111 213 202408 39 19 43 20 chain 4858 chr12 133851895 + 132145607 132145698 5S 121 + 0 92 196689 12 24 25 55 chain 22641 chr12 133851895 + 132183465 132183774 MER1A 529 + 198 521 117367 82 0 1 61 0 6 42 0 3 69 15 19 40 chain 116150 chr12 133851895 + 132227715 132229249 THE1B-int 1605 - 12 1585 32396 93 0 1 121 13 14 26 2 0 60 0 3 126 7 11 634 0 5 32 9 35 162 3 5 218 7 6 21 chain 51578 chr12 133851895 + 132261697 132262288 L1PA4 6152 - 9 599 57903 258 2 1 331 chain 22147 chr12 133851895 + 132268054 132268332 AluY 311 + 0 291 119602 69 1 9 54 0 1 17 1 5 136 chain 124618 chr12 133851895 + 132293853 132295239 L1PA3long 6157 - 0 1389 29502 5 0 2 135 0 1 108 0 1 6 1 0 1131 chain 24546 chr12 133851895 + 132331681 132331975 AluY 311 + 6 300 107273 113 1 0 13 0 1 167 chain 25009 chr12 133851895 + 132355878 132356176 AluY 311 + 0 300 104738 89 0 4 200 2 0 7 chain 59308 chr12 133851895 + 132357773 132358511 LTR17 781 - 27 781 53219 21 3 25 172 0 1 208 1 0 65 7 1 261 chain 327500 chr12 133851895 + 132358825 132363017 HERV17-int 4347 - 0 4319 12294 400 0 5 504 3 4 509 0 1 182 311 0 105 0 2 393 0 1 54 0 5 446 5 0 264 1 2 705 0 430 37 1 2 157 2 1 15 1 0 11 2 0 34 1 0 5 3 4 41 chain 58742 chr12 133851895 + 132364745 132365489 LTR17 781 - 7 773 53556 37 19 42 367 2 1 319 chain 10313 chr12 133851895 + 132372090 132372214 MER4E1 777 - 651 777 159076 110 0 2 14 chain 5557 chr12 133851895 + 132376421 132376509 L1PA15 4387 + 4286 4366 189504 27 2 0 16 5 0 27 1 0 10 chain 119494 chr12 133851895 + 132410293 132411662 SVA_D 2077 - 12 2077 31220 438 0 1 100 1 0 67 5 543 94 0 40 20 0 40 72 0 80 153 2 1 98 1 0 318 chain 2671 chr12 133851895 + 132453211 132453271 L1ME1 1623 - 1343 1402 230760 17 11 12 14 2 0 16 chain 77145 chr12 133851895 + 132485593 132486568 LTR13 1007 - 0 1007 44887 31 12 7 6 0 2 260 0 15 57 2 1 183 4 3 56 8 32 286 2 0 68 chain 86201 chr12 133851895 + 132531901 132532986 MER11B 1079 - 5 1079 41075 19 1 2 168 0 1 113 8 2 174 9 8 73 1 2 19 9 0 232 3 0 36 0 5 220 chain 76073 chr12 133851895 + 132535827 132536798 LTR13 1007 - 16 1007 45434 65 0 2 11 0 5 90 16 19 97 0 1 6 15 23 286 4 5 381 chain 37566 chr12 133851895 + 132580281 132580824 LTR10A 586 + 0 573 72727 61 5 6 135 8 9 25 0 29 12 5 6 163 1 0 4 0 1 52 8 6 64 chain 15404 chr12 133851895 + 132583071 132583275 MSTA 426 - 22 230 140187 126 0 1 31 10 12 32 0 1 5 chain 83297 chr12 133851895 + 132587093 132588052 LTR13A 966 + 0 966 42206 180 0 2 317 0 5 462 chain 14615 chr12 133851895 + 132616088 132616288 LTR3A 482 + 272 473 142536 14 0 1 133 24 24 29 chain 2929 chr12 133851895 + 132643367 132643398 MLT1C 463 + 69 100 226527 31 chain 32537 chr12 133851895 + 132650300 132650714 LTR66 600 - 187 600 79964 163 3 2 248 chain 9690 chr12 133851895 + 132693641 132693789 MER41B 635 + 29 177 162145 57 17 16 24 0 1 50 chain 3268 chr12 133851895 + 132695256 132695311 HSMAR1 1287 + 685 743 219625 25 7 10 23 chain 82811 chr12 133851895 + 132829003 132830275 LTR13A 966 - 0 966 42412 117 2 0 16 311 0 329 0 5 446 0 2 51 chain 15394 chr12 133851895 + 132948529 132948789 L1MA5A 2387 - 1421 1654 140218 56 47 17 104 3 6 50 chain 37356 chr12 133851895 + 133016996 133017456 LTR2 463 - 0 461 73023 88 14 15 358 chain 20049 chr12 133851895 + 133258625 133258875 AluY 311 + 26 278 126980 64 0 1 40 1 2 145 chain 23654 chr12 133851895 + 133274598 133274884 AluSg7 307 - 10 296 112287 58 0 1 108 1 0 119 chain 5268 chr12 133851895 + 133278316 133278374 LTR23 429 + 326 384 192335 58 chain 3487 chr12 133851895 + 133319283 133319415 HAL1-2a_MD 234 + 19 79 215580 7 3 0 19 6 0 8 14 0 4 49 0 22 chain 24389 chr12 133851895 + 133343933 133344222 AluY 311 + 16 304 108142 106 0 1 7 2 0 174 chain 23837 chr12 133851895 + 133371502 133371793 AluSc 308 + 10 301 111267 291 chain 85099 chr12 133851895 + 133385435 133386471 LTR13 1007 - 0 1007 41480 56 0 2 207 0 1 48 1 5 258 33 5 78 8 0 347 chain 75575 chr12 133851895 + 133386933 133387899 LTR13 1007 + 0 1007 45731 68 2 0 198 0 2 113 4 5 30 0 32 180 2 1 54 24 29 196 0 5 62 2 1 31 chain 23721 chr12 133851895 + 133392512 133392809 AluYk4 311 + 10 300 111931 282 7 0 8 chain 26125 chr12 133851895 + 133398154 133398463 AluYk4 311 + 0 305 99507 41 5 1 263 chain 22758 chr12 133851895 + 133431125 133431397 AluY 311 + 15 288 116788 117 0 1 155 chain 3563 chr12 133851895 + 133452945 133453061 Tigger4a 237 + 54 196 214273 20 50 58 32 1 19 13 chain 21892 chr12 133851895 + 133455169 133455430 AluY 311 + 46 307 120653 86 0 1 26 1 0 148 chain 22971 chr12 133851895 + 133456971 133457260 AluY 311 + 11 299 115745 37 7 5 79 0 1 166 chain 8794 chr12 133851895 + 133465902 133466010 MER4D1 891 + 546 656 166684 56 0 2 52 chain 30677 chr12 133851895 + 133466096 133466550 LTR7 482 + 0 477 83074 56 9 5 40 15 14 120 0 31 97 3 0 8 1 0 48 13 14 44 chain 263461 chr12 133851895 + 133466557 133470697 HERVH-int 3825 + 0 3825 15511 56 1 4 90 1 2 181 1 0 30 2 3 107 0 4 8 2 0 35 52 258 292 13 14 145 15 0 202 389 40 129 4 3 174 60 45 99 1 0 4 0 1 745 0 1 86 18 19 196 165 0 11 0 3 29 1 0 76 0 3 175 0 2 110 0 1 89 1 0 244 0 8 101 chain 31730 chr12 133851895 + 133474634 133475080 LTR7 482 + 0 477 81277 101 15 14 66 1 0 51 0 31 42 0 1 59 1 2 4 1 0 48 13 14 44 chain 17432 chr12 133851895 + 133475087 133475326 AluSg7 307 + 58 293 134431 74 17 14 133 2 1 13 chain 10293 chr12 133851895 + 133477125 133477336 ERVL-B4-int 2334 - 1988 2199 159167 23 57 56 43 4 5 84 chain 24362 chr12 133851895 + 133480393 133480675 AluY 311 + 19 301 108307 86 1 0 27 0 1 168 chain 16067 chr12 133851895 + 133484089 133484288 L1PA7 6471 - 7 204 138157 5 3 0 145 0 1 46 chain 6458 chr12 133851895 + 133488519 133488606 THE1B 368 - 278 368 181573 22 1 4 64 chain 133156 chr12 133851895 + 133515156 133516701 LTR12C 1709 + 0 1709 27398 309 0 1 4 1 0 454 0 161 182 1 0 5 3 1 107 0 4 212 0 1 36 0 1 231 chain 37501 chr12 133851895 + 133525601 133526156 LTR14 556 + 0 556 72810 101 50 52 46 0 4 116 12 8 132 7 6 91 chain 5037 chr12 133851895 + 133533824 133533953 LTR7B 505 - 164 292 194755 22 1 2 33 26 0 16 13 37 18 chain 75994 chr12 133851895 + 133540423 133541379 LTR13_ 950 + 8 950 45485 125 1 4 134 0 2 128 6 5 188 21 11 32 14 0 4 0 6 303 chain 14979 chr12 133851895 + 133546198 133546392 MLT2A2 560 + 0 192 141385 180 2 0 12 chain 10784 chr12 133851895 + 133547866 133548117 MLT1A1 405 + 156 405 157057 13 1 0 11 18 17 32 46 45 30 15 16 85 chain 73845 chr12 133851895 + 133553352 133554345 LTR13 1007 + 0 1007 46592 68 6 0 68 1 2 128 0 2 113 25 26 44 1 2 177 1 0 56 3 20 106 5 6 159 2 0 30 chain 61304 chr12 133851895 + 133560831 133561779 L1MA3 4352 - 20 934 52205 4 1 0 13 2 1 19 44 17 20 9 13 40 0 2 23 1 0 14 6 10 32 47 31 8 0 1 102 0 1 563 chain 4548 chr12 133851895 + 133575744 133575795 LTR47A 437 - 119 170 200242 51 chain 21222 chr12 133851895 + 133602727 133602984 AluSg7 307 - 49 307 123130 126 0 1 131 chain 22441 chr12 133851895 + 133606164 133606432 AluY 311 + 38 307 118285 94 0 1 174 chain 7109 chr12 133851895 + 133624126 133624211 5S 121 - 33 118 176691 85 chain 23357 chr12 133851895 + 133648414 133648683 AluSp 311 - 34 303 113889 269 chain 33570 chr12 133851895 + 133656049 133656554 MER41A 554 + 0 547 78285 195 26 38 11 0 7 7 5 23 149 0 1 33 17 22 44 1 0 17 chain 87686 chr12 133851895 + 133667121 133668131 LTR5A 1029 - 0 1029 40496 182 0 4 532 0 1 163 1 15 132 chain 145453 chr12 133851895 + 133668889 133672041 HERVK-int 6823 - 226 6809 25264 11 5 0 10 15 9 4 1 0 17 34 25 13 1 0 4 1 0 29 4 2 8 1 0 8 4 0 4 2 0 10 40 29 29 2 0 11 1 0 3 1 0 11 1 0 15 2 0 9 7 3 10 163 87 4 1 0 10 2 0 3 1 0 19 1 0 11 21 15 19 1 0 7 2 0 71 36 30 41 1 0 123 0 2 33 1 0 101 1 0 22 1 0 96 1 0 70 15 132 23 5 4 228 4 0 8 256 1558 4 0 1 516 275 2441 7 0 9 107 52 55 11 1 0 134 0 11 7 12 1 169 2 0 11 1 0 22 1 0 26 1 0 23 15 13 20 1 0 4 chain 87204 chr12 133851895 + 133672057 133673064 LTR5A 1029 - 0 1029 40686 125 0 1 56 0 4 527 0 1 129 0 2 37 1 15 132 chain 22205 chr12 133851895 + 133689392 133689650 AluY 311 + 29 288 119326 103 0 1 155 chain 19660 chr12 133851895 + 133691723 133691956 AluSp 311 + 26 259 128218 233 chain 316485 chr12 133851895 + 133773631 133777127 L1PA3long 6157 - 6 3515 12743 837 0 4 1917 0 1 124 1 9 76 1 0 11 0 1 529 chain 23732 chr12 133851895 + 133787894 133788189 AluSp 311 + 9 299 111873 143 19 14 133 chain 3366 chr12 133851895 + 133789246 133789292 L1MB3 1562 - 562 608 217736 11 0 1 17 1 0 17 chain 7264 chr12 133851895 + 133789858 133789948 L1MB3 1562 + 519 609 175691 90 chain 6225 chr12 133851895 + 133815050 133815131 HY3 101 + 10 98 183358 49 0 7 32 chain 536660 chr12 133851895 + 133821527 133827666 L1PA4 6152 + 1 6143 3359 419 0 1 815 0 1 440 0 1 1087 0 1 542 0 1 375 3 0 93 1 2 677 0 2 842 0 1 178 3 0 664 chain 81705 chr13 115169878 + 19025167 19026184 MER11C 1089 - 30 1065 42889 321 0 1 45 0 4 133 0 1 169 2 1 67 0 4 58 6 15 216 chain 29878 chr13 115169878 + 19027043 19027370 L1PA2 6032 - 0 327 85172 327 chain 13386 chr13 115169878 + 19067765 19067926 L1PA4 6152 - 0 158 146762 6 3 0 152 chain 521725 chr13 115169878 + 19077617 19083761 L1PA4 6152 + 8 6152 4994 482 0 1 85 1 0 132 12 5 358 0 1 1163 0 1 1279 2 0 176 0 2 1199 0 1 385 0 4 19 2 1 17 1 2 56 1 3 766 2 0 6 chain 155550 chr13 115169878 + 19091957 19093700 L1PA2 6032 - 1970 3716 23900 456 0 1 43 0 2 1244 chain 175113 chr13 115169878 + 19093700 19095665 L1PA2 6032 + 4066 6032 21447 703 0 1 1096 5 0 7 4 9 44 0 2 99 2 0 5 chain 20823 chr13 115169878 + 19096944 19097282 THE1B 368 - 0 362 124533 18 3 0 5 3 6 96 35 45 29 1 0 110 0 15 38 chain 23088 chr13 115169878 + 19106852 19107106 L1PA4 6152 + 5743 5997 115203 254 chain 13352 chr13 115169878 + 19107113 19107266 L1PA4 6152 + 5997 6150 146874 153 chain 29265 chr13 115169878 + 19153984 19154292 AluYa5 310 - 2 310 87719 308 chain 25284 chr13 115169878 + 19168858 19169412 LTR4 552 - 14 518 103289 74 1 0 23 51 66 47 81 10 115 12 11 11 1 0 68 43 52 27 chain 26813 chr13 115169878 + 19178187 19178469 AluYb8 318 + 32 314 96929 282 chain 76266 chr13 115169878 + 19182219 19183049 L1PA2 6032 + 5202 6032 45331 830 chain 22500 chr13 115169878 + 19190296 19190569 AluSp 311 - 35 309 118026 101 0 1 172 chain 499471 chr13 115169878 + 19205014 19212225 L1PA6 6164 + 4 6162 6865 24 9 5 71 1 0 306 20 20 137 1 0 226 1 18 88 4 8 1243 0 6 68 0 1 100 0 2 255 0 4 65 1 0 297 0 18 225 0 1 108 0 1 1044 1111 0 17 0 4 277 0 1 106 0 3 117 4 5 362 0 1 608 1 2 314 chain 82533 chr13 115169878 + 19209314 19210419 MER11A 1151 + 0 1151 42525 79 0 8 207 0 11 45 37 0 38 0 1 22 0 1 96 5 6 320 1 59 192 1 0 26 0 4 36 chain 123834 chr13 115169878 + 19247425 19248904 SVA_D 2077 + 0 2076 29757 439 0 116 206 3 0 65 0 40 42 1 0 4 1 0 4 4 494 318 0 3 284 47 0 61 chain 22865 chr13 115169878 + 19266929 19267227 AluSp 311 - 11 311 116259 62 24 26 212 chain 16705 chr13 115169878 + 19269652 19269862 L1PA6 6164 - 2 212 136390 210 chain 18422 chr13 115169878 + 19277822 19278130 LTR7B 505 + 0 505 131707 51 0 1 56 57 254 79 14 13 51 chain 11984 chr13 115169878 + 19283887 19284037 BC200 147 - 1 147 152273 13 3 0 91 1 0 42 chain 74671 chr13 115169878 + 19294134 19295057 LTR5_Hs 974 + 0 974 46178 134 0 1 26 0 2 122 0 1 65 0 1 75 0 35 357 8 15 37 2 0 20 0 6 77 chain 79424 chr13 115169878 + 19296667 19297539 L1PA3long 6157 - 8 881 43863 104 0 1 768 chain 6926 chr13 115169878 + 19305296 19305386 MER30 238 + 136 232 177991 16 0 6 74 chain 6181 chr13 115169878 + 19314918 19315116 LTR16C 481 - 74 274 183736 47 100 100 19 3 5 29 chain 3007 chr13 115169878 + 19321777 19321813 MSTA 426 - 327 363 224885 36 chain 3987 chr13 115169878 + 19326746 19326797 MSTA 426 - 52 104 207573 46 0 1 5 chain 4759 chr13 115169878 + 19346108 19346358 MSTA 426 - 52 313 197813 42 143 150 26 22 26 17 chain 4800 chr13 115169878 + 19359947 19360072 MSTA-int 1630 - 17 142 197362 24 35 36 32 11 10 23 chain 4474 chr13 115169878 + 19365430 19365641 MSTA 426 - 52 270 201073 42 143 150 26 chain 3024 chr13 115169878 + 19380004 19380038 MSTA 426 - 249 283 224487 34 chain 126466 chr13 115169878 + 19409927 19411913 SVA_A 1864 - 3 1550 28953 133 0 22 535 2 0 23 5 4 111 347 0 121 75 0 26 1 0 119 37 2 451 chain 16771 chr13 115169878 + 19410753 19411083 SVA_A 1864 - 845 1128 69636 71 49 6 57 1 0 7 3 1 105 8 7 29 chain 2634 chr13 115169878 + 19410824 19410861 SVA_A 1864 - 989 1060 70738 1 2 36 34 chain 1880 chr13 115169878 + 19411425 19411462 SVA_A 1864 - 1284 1363 69636 1 0 2 5 0 40 31 chain 6471 chr13 115169878 + 19417676 19417764 L1PA5 6144 - 2 87 181466 6 4 0 10 1 0 10 0 2 57 chain 69194 chr13 115169878 + 19430068 19430836 L1PA5 6144 + 5367 6135 48720 768 chain 27790 chr13 115169878 + 19476808 19477099 AluYa5 310 - 1 292 93735 291 chain 24476 chr13 115169878 + 19502493 19502772 L1PA5 6144 + 5865 6144 107670 279 chain 40400 chr13 115169878 + 19551233 19551744 MER9a2 513 + 0 510 68737 258 0 18 10 20 1 223 chain 509487 chr13 115169878 + 19557910 19563992 L1PA5 6144 + 10 6138 6205 110 0 14 133 0 2 185 0 1 363 0 17 331 12 3 1101 0 4 24 0 1 14 0 1 225 1 0 297 1 2 21 1 4 307 1 0 344 7 10 160 0 1 248 0 1 24 3 4 148 0 1 233 1 5 279 4 6 637 2 1 634 0 1 231 chain 4242 chr13 115169878 + 19616286 19616336 MLT2B2 565 + 8 58 203987 50 chain 2781 chr13 115169878 + 19656629 19656689 L1MC1 2226 + 811 870 228996 14 16 15 30 chain 5913 chr13 115169878 + 19656755 19656818 L1PA3long 6157 + 6084 6147 186069 63 chain 548612 chr13 115169878 + 19677852 19683864 L1PA2 6032 - 3 6031 1622 6 3 0 142 1 0 701 0 4 1298 0 3 79 1 2 652 0 8 868 0 4 710 0 2 1450 2 0 99 chain 11600 chr13 115169878 + 19689894 19690033 MER85 139 - 0 139 153885 139 chain 22309 chr13 115169878 + 19710324 19710600 AluSz 310 + 21 297 118879 276 chain 79227 chr13 115169878 + 19737656 19738728 MER11B 1079 - 5 1079 43937 24 1 0 66 0 2 57 2 0 36 4 5 58 5 6 51 1 3 25 10 0 296 19 20 65 0 3 127 0 5 225 chain 356663 chr13 115169878 + 19786964 19793847 L1P1 4361 - 316 4360 11442 2559 2839 0 1485 chain 106901 chr13 115169878 + 19789705 19791010 L1P1 4361 - 3057 4360 35003 166 0 6 85 0 1 322 1 0 17 12 5 128 1 0 573 chain 93913 chr13 115169878 + 19791020 19792061 L1P1 4361 - 1533 2575 38378 59 0 1 982 chain 24404 chr13 115169878 + 19805911 19806195 AluSp 311 + 15 299 108055 284 chain 394233 chr13 115169878 + 19818662 19825387 L1PB1 5432 + 12 5427 10310 7 1 0 862 1 2 5 1 0 207 0 3 95 100 14 88 0 1 69 323 0 42 4 7 176 3 4 25 2 1 92 6 9 217 6 7 225 0 1 169 0 1 154 9 0 212 7 9 123 2 3 49 0 3 751 903 0 83 2 6 27 0 1 204 45 39 77 3 0 54 0 1 240 3 4 9 2 1 201 0 6 28 3 0 68 0 1 102 12 13 177 5 6 12 1 2 96 1 2 12 3 0 19 1 0 10 1 0 10 2 0 3 2 0 8 2 0 69 1 0 40 9 8 12 2 0 6 13 6 19 2 0 5 1 0 4 2 4 6 2 0 12 0 13 19 0 3 8 7 6 15 2 0 5 chain 6302 chr13 115169878 + 19822701 19822784 L1PB 1623 - 429 512 182775 83 chain 51921 chr13 115169878 + 19838699 19839518 MER4E 760 + 5 753 57671 17 0 2 5 20 21 122 0 1 99 23 3 15 16 0 53 0 1 19 2 4 60 2 0 7 45 4 62 1 2 251 chain 99766 chr13 115169878 + 19844274 19847125 L1PA8 5853 + 50 2536 8867 22 2 0 8 65 28 197 22 10 227 2 3 88 0 6 10 6 0 18 3 1 265 4 0 638 311 0 334 0 2 72 1 0 42 1 2 513 chain 24920 chr13 115169878 + 19845858 19846151 L1PA6 6164 - 2 287 105221 168 9 1 116 chain 549656 chr13 115169878 + 19847135 19853152 L1PA2 6032 + 2 6027 1498 254 1 0 454 0 7 209 0 1 394 0 1 4705 chain 115548 chr13 115169878 + 19853726 19857028 L1PA8 5853 + 2536 5853 8867 29 1 2 95 0 1 324 4 5 324 0 3 12 0 1 239 0 4 65 4 5 14 0 2 383 1 4 56 11 6 83 0 2 176 3 5 361 1 2 266 10 14 477 4 3 65 1 0 44 2 0 71 1 0 15 0 1 45 2 1 21 1 0 91 chain 88612 chr13 115169878 + 19881306 19882281 L1PA4 6152 + 5172 6146 40139 206 1 0 768 chain 11004 chr13 115169878 + 19882490 19882770 L1PB1 5432 - 19 274 156191 9 1 0 13 1 0 21 1 0 20 52 38 17 4 2 4 1 0 8 1 0 44 6 5 10 7 6 46 3 1 11 chain 75031 chr13 115169878 + 19891242 19892064 L1PA4 6152 - 1 822 46003 781 1 0 40 chain 39299 chr13 115169878 + 19917725 19918202 L1PA7 6471 + 5999 6469 70324 71 0 1 239 6 0 149 2 0 10 chain 2847 chr13 115169878 + 19939716 19939746 L1PA6 6164 - 193 223 227888 30 chain 5922 chr13 115169878 + 19939746 19939809 L1PA6 6164 + 6098 6161 185972 63 chain 12860 chr13 115169878 + 19955905 19956098 MER30 238 + 0 230 148797 18 1 19 58 17 34 28 0 2 71 chain 47096 chr13 115169878 + 19984086 19984707 LTR14B 630 + 10 630 61128 22 10 11 13 1 0 354 5 4 216 chain 92897 chr13 115169878 + 20052263 20053308 L1PA5 6144 + 5096 6143 38690 415 1 2 353 0 1 276 chain 22747 chr13 115169878 + 20057922 20058198 L1PA5 6144 - 2 280 116838 157 3 5 116 chain 547582 chr13 115169878 + 20070926 20076953 L1PA2 6032 + 0 6031 1756 72 1 2 182 1 0 1107 0 2 3666 0 5 983 3 0 12 chain 28176 chr13 115169878 + 20080300 20080604 AluYa5 310 - 0 302 92387 184 2 0 118 chain 20100 chr13 115169878 + 20113370 20113667 THE1B 368 + 0 306 126830 169 1 0 29 0 3 8 4 8 11 22 25 53 chain 23761 chr13 115169878 + 20136089 20136397 AluY 311 + 0 311 111698 36 9 17 75 6 0 49 0 1 133 chain 132124 chr13 115169878 + 20150250 20151725 L1PA4 6152 - 1408 2885 27613 421 0 1 638 1 2 415 chain 126036 chr13 115169878 + 20151725 20153141 L1PA4 6152 + 4723 6141 29028 248 2 0 333 0 4 833 chain 71361 chr13 115169878 + 20157161 20158270 L1MA1 4479 - 300 1344 47764 7 7 0 13 5 1 7 1 0 9 1 0 35 2 0 29 1 0 126 3 0 6 1 0 59 0 6 22 1 0 12 2 0 18 1 0 87 9 7 12 0 1 8 1 0 101 45 19 81 3 0 118 9 6 126 5 0 12 1 0 39 1 0 34 4 0 21 9 7 15 chain 59704 chr13 115169878 + 20168551 20169200 L1PA2 6032 - 1 650 52990 649 chain 76599 chr13 115169878 + 20174357 20175325 LTR5_Hs 974 + 0 974 45162 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 23457 chr13 115169878 + 20177273 20177536 AluSp 311 - 27 290 113334 263 chain 540011 chr13 115169878 + 20185891 20192021 L1PA5 6144 - 0 6141 2815 145 1 0 698 0 4 953 0 8 661 2 0 505 1 0 397 0 4 1617 0 3 908 2 12 86 14 0 140 chain 13567 chr13 115169878 + 20198647 20198845 MER2 342 + 80 278 146102 17 2 1 108 10 11 61 chain 44803 chr13 115169878 + 20200461 20200975 MER9a2 513 + 0 513 63287 364 1 0 149 chain 255995 chr13 115169878 + 20201754 20204851 HERVK9-int 4720 + 36 4720 15936 13 8 5 4 1 0 66 1 0 8 1 0 1364 0 924 44 2 1 4 0 1 37 0 3 141 47 685 264 0 14 49 1 0 669 5 0 14 0 15 12 1 0 238 0 6 103 chain 44490 chr13 115169878 + 20204851 20205365 MER9a2 513 + 0 508 63593 12 7 1 495 chain 8901 chr13 115169878 + 20205370 20205480 THE1D 372 + 259 369 166138 110 chain 165448 chr13 115169878 + 20226272 20228336 L1P3 4156 + 0 2092 22599 251 1 0 69 1 0 89 1 0 329 0 2 431 0 10 26 0 4 64 4 6 109 0 3 26 0 3 70 0 3 132 0 1 41 11 12 309 1 3 99 chain 24310 chr13 115169878 + 20289896 20290182 AluY 311 + 25 311 108600 286 chain 11605 chr13 115169878 + 20320137 20320273 AluSc5 308 - 2 138 153871 136 chain 8408 chr13 115169878 + 20330396 20330542 MER51B 395 + 235 395 168803 10 1 0 29 1 0 20 12 24 12 1 5 60 chain 6547 chr13 115169878 + 20349554 20349733 MER2 342 + 161 337 180866 63 0 1 5 86 82 25 chain 166387 chr13 115169878 + 20352548 20354965 SVA_F 1814 + 9 1809 22474 882 629 0 56 0 15 39 1 0 10 1 0 166 1 0 4 1 0 290 1 0 12 0 2 324 chain 11481 chr13 115169878 + 20353469 20353613 SVA_F 1814 + 931 1089 93882 16 1 15 31 13 13 83 chain 21234 chr13 115169878 + 20353613 20354043 SVA_F 1814 + 898 1213 80038 49 2 16 193 129 0 57 chain 8229 chr13 115169878 + 20353873 20353963 SVA_F 1814 + 1170 1260 169784 90 chain 3591 chr13 115169878 + 20357983 20358070 MER58B 340 - 0 92 213815 38 34 39 15 chain 25381 chr13 115169878 + 20369346 20369655 AluSp 311 + 0 311 102773 64 1 3 244 chain 27458 chr13 115169878 + 20387049 20387359 AluYk4 311 - 0 310 94791 310 chain 34400 chr13 115169878 + 20391484 20391962 LTR3B_ 500 - 6 500 77057 83 0 3 26 0 5 22 0 1 17 4 7 97 1 0 81 7 8 52 13 17 75 chain 23364 chr13 115169878 + 20430508 20430799 AluSp 311 + 10 297 113843 273 4 0 14 chain 13973 chr13 115169878 + 20439269 20439501 MER30 238 - 0 238 144672 45 0 3 56 6 0 6 10 21 77 17 15 15 chain 3572 chr13 115169878 + 20444120 20444161 MLT1F1 559 - 113 154 214111 41 chain 3277 chr13 115169878 + 20449010 20449051 L1PA17 2846 + 2641 2691 219414 7 0 9 34 chain 24871 chr13 115169878 + 20451090 20451368 AluYc 301 + 8 288 105511 112 0 2 166 chain 19196 chr13 115169878 + 20459006 20459280 LTR12_ 688 - 439 688 129536 44 24 0 182 2 1 22 chain 12100 chr13 115169878 + 20474927 20475078 AluY 311 + 36 189 151794 96 6 8 49 chain 60937 chr13 115169878 + 20490317 20491008 L1PA6 6164 + 5467 6160 52369 37 0 3 644 1 0 9 chain 5730 chr13 115169878 + 20494346 20494471 MER58C 217 - 10 152 187841 42 0 1 14 42 58 27 chain 4581 chr13 115169878 + 20495935 20495999 LTR56 451 - 17 80 199852 10 1 0 53 chain 22741 chr13 115169878 + 20497209 20497523 AluSx1 309 + 12 309 116866 72 12 6 43 25 14 162 chain 48706 chr13 115169878 + 20511780 20512355 L1PA4 6152 - 1 563 59950 334 16 4 4 1 0 220 chain 17921 chr13 115169878 + 20519883 20520114 AluSp 311 + 83 307 133055 37 4 0 8 3 0 179 chain 3672 chr13 115169878 + 20530475 20530583 L1MB7 1623 - 145 239 212339 25 5 2 7 8 0 8 1 0 5 22 20 27 chain 5153 chr13 115169878 + 20582571 20582675 MER44A 345 + 180 304 193522 30 0 1 27 27 46 20 chain 10459 chr13 115169878 + 20599909 20600035 Tigger3a 397 - 132 258 158449 126 chain 226465 chr13 115169878 + 20612801 20616376 L1PA13 3608 - 128 3389 17512 11 2 1 20 9 5 22 7 0 25 2 0 5 1 0 14 0 1 11 0 2 7 8 3 19 1 0 53 10 8 86 0 3 25 1 0 27 1 0 104 0 6 231 4 0 60 1 0 42 309 0 18 0 1 120 1 0 45 1 0 454 1 0 4 0 1 10 3 0 45 0 3 33 39 24 316 9 10 159 1 0 53 0 25 70 25 44 180 1 10 137 1 4 184 0 5 99 81 66 35 1 0 15 8 6 11 1 0 6 1 0 15 1 0 18 7 2 16 2 0 17 1 0 13 1 0 81 0 1 42 7 5 26 2 1 40 chain 3189 chr13 115169878 + 20629078 20629113 MER8 282 + 1 36 221121 35 chain 24517 chr13 115169878 + 20657191 20657491 AluSp 311 - 4 301 107458 17 3 0 280 chain 17601 chr13 115169878 + 20671342 20671612 LTR12_ 688 - 440 688 133995 30 39 15 64 0 1 46 1 2 90 chain 13892 chr13 115169878 + 20674692 20674878 L1MB3 1562 + 1193 1377 144947 8 1 0 151 1 0 25 chain 8110 chr13 115169878 + 20694225 20694343 LTR54B 464 + 0 123 170436 59 9 14 50 chain 9041 chr13 115169878 + 20695309 20695419 MER51A 677 - 567 677 165377 67 1 0 36 0 1 6 chain 18020 chr13 115169878 + 20704445 20704808 THE1B 368 - 0 368 132802 29 0 4 16 16 17 62 0 8 18 50 45 52 8 9 17 23 19 72 chain 14711 chr13 115169878 + 20706229 20706442 MER50 708 - 485 702 142234 28 0 1 22 5 6 57 5 7 96 chain 9106 chr13 115169878 + 20709394 20709694 L1MB3 1562 - 57 334 165040 61 167 144 72 chain 42553 chr13 115169878 + 20727435 20727933 L1PA5 6144 + 5647 6141 65958 488 4 0 6 chain 31589 chr13 115169878 + 20781242 20781593 L1PA3long 6157 + 5807 6157 81511 97 1 0 253 chain 3940 chr13 115169878 + 20794205 20794252 L1MA10 1535 - 803 851 208273 5 0 1 42 chain 246085 chr13 115169878 + 20817420 20820204 L1P1 4361 + 4 2816 16440 649 9 1 352 1 17 214 0 1 397 0 1 431 0 3 623 0 15 108 chain 6807 chr13 115169878 + 20825612 20825692 MER5A 189 - 21 101 178901 80 chain 12761 chr13 115169878 + 20834844 20835007 L1MA4 2864 - 675 837 149202 71 1 0 91 chain 5076 chr13 115169878 + 20850813 20850880 MLT1B-int 1170 - 156 222 194346 62 1 0 4 chain 35690 chr13 115169878 + 20851934 20852451 L1PA16 3655 + 3041 3567 75284 94 2 0 69 1 0 87 2 0 15 26 27 83 3 6 50 0 10 85 chain 40021 chr13 115169878 + 20866372 20866836 LTR12C 1709 + 0 464 69289 203 1 2 18 1 0 241 chain 45061 chr13 115169878 + 20898561 20899676 HUERS-P2-int 2744 + 1894 2720 62977 153 390 82 18 8 10 115 18 47 121 1 0 22 0 3 7 0 6 34 2 0 32 4 0 37 27 23 12 1 0 39 3 0 34 19 15 11 2 0 5 chain 282178 chr13 115169878 + 20902101 20905553 L1PA8 5853 + 2375 5853 14525 93 9 1 419 1 0 254 17 0 79 1 0 164 0 1 256 0 1 28 1 32 125 2 1 41 0 1 152 0 1 133 0 3 252 0 8 26 0 14 421 0 1 127 2 0 266 10 11 160 0 1 115 1 0 47 2 0 69 2 1 9 1 0 51 3 2 19 1 0 93 chain 28183 chr13 115169878 + 20915451 20915758 AluYa5 310 - 7 310 92371 180 4 0 123 chain 3527 chr13 115169878 + 20917923 20917965 LTR12F 595 + 104 146 214929 42 chain 3064 chr13 115169878 + 20919835 20919883 MADE1 96 - 5 69 223675 31 1 17 16 chain 29021 chr13 115169878 + 20960745 20961109 THE1B 368 + 0 368 88900 40 0 5 127 2 1 195 chain 7346 chr13 115169878 + 20963592 20963682 LTR12F 595 - 505 595 175123 90 chain 3259 chr13 115169878 + 20971173 20971240 HAL1-2a_MD 234 - 157 209 219795 28 3 0 15 12 0 9 chain 7043 chr13 115169878 + 20982747 20982824 L1PA3long 6157 - 1825 1902 176523 77 chain 164737 chr13 115169878 + 20982824 20984681 L1PA3long 6157 + 4331 6156 22691 687 37 5 800 0 1 80 1 0 252 chain 15462 chr13 115169878 + 20987700 20987970 Tigger4b 360 - 56 359 140013 99 0 9 49 57 81 65 chain 4982 chr13 115169878 + 21008433 21008598 LTR12F 595 + 47 169 195340 33 24 0 11 61 26 20 0 16 16 chain 59299 chr13 115169878 + 21024686 21025347 L1PA5 6144 + 5470 6132 53224 505 0 1 156 chain 54889 chr13 115169878 + 21025375 21026246 L1PA16 3655 + 2688 3563 55777 212 1 0 57 0 3 20 0 2 15 0 1 80 4 6 120 1 0 40 72 74 77 49 45 123 chain 25164 chr13 115169878 + 21033109 21033397 AluY 311 + 17 305 103938 106 1 0 9 0 1 172 chain 22293 chr13 115169878 + 21080992 21081344 THE1B 368 + 0 367 118942 169 1 0 29 37 52 25 14 15 77 chain 8769 chr13 115169878 + 21105645 21105768 THE1D 372 + 248 372 166821 85 5 6 33 chain 38985 chr13 115169878 + 21117542 21118019 LTR15 485 + 0 484 70759 74 1 0 226 0 12 121 4 0 51 chain 39247 chr13 115169878 + 21124637 21125206 LTR3B_ 500 - 0 500 70392 41 75 0 50 0 2 107 0 2 55 0 2 241 chain 35761 chr13 115169878 + 21138961 21139759 LTR10F 562 + 0 560 75190 40 0 2 36 309 0 29 3 87 37 14 0 267 3 2 60 chain 170027 chr13 115169878 + 21149989 21152681 L1MA2 4263 - 325 2661 22048 129 9 8 5 2 0 134 1 0 77 5 1 120 1 5 177 2 0 212 0 4 81 0 1 78 1 2 188 0 1 13 5 0 54 5 0 6 0 3 79 0 4 245 34 39 33 3 1 9 0 3 245 16 15 30 0 2 173 362 0 102 0 1 56 chain 17254 chr13 115169878 + 21157388 21157604 L1MB2 1706 - 149 366 134914 94 0 1 122 chain 4405 chr13 115169878 + 21196057 21196106 L1MC1 2226 - 179 228 201877 49 chain 35811 chr13 115169878 + 21208951 21209357 L1PA4 6152 - 12 424 75115 400 0 6 6 chain 18797 chr13 115169878 + 21209757 21210014 L1PA8 5853 + 5587 5838 130684 22 2 0 70 1 0 13 1 0 47 3 2 19 2 1 77 chain 31720 chr13 115169878 + 21236240 21236680 L1P2 5180 + 749 3732 81298 34 0 15 160 21 2549 225 chain 40348 chr13 115169878 + 21252385 21252905 MER9B 498 - 0 498 68811 89 1 2 55 0 1 251 24 1 91 1 0 8 chain 282324 chr13 115169878 + 21254590 21258137 HERVK9-int 4720 - 831 4385 14516 357 0 1 213 6 0 17 0 1 261 8 7 567 0 6 181 0 4 732 0 2 488 0 3 178 0 1 4 1 0 213 3 0 318 chain 41166 chr13 115169878 + 21259046 21259550 MER9B 498 - 0 498 67688 88 0 1 57 0 1 194 7 0 149 1 0 8 chain 7855 chr13 115169878 + 21273742 21273963 Tigger3a 397 + 139 374 171962 12 1 11 84 42 33 13 49 62 20 chain 16016 chr13 115169878 + 21289879 21290173 AluJb 308 - 5 308 138314 125 57 50 16 11 13 36 1 15 48 chain 3127 chr13 115169878 + 21312142 21312392 L1MC5 759 + 409 656 222401 17 2 1 9 186 183 6 0 1 30 chain 9886 chr13 115169878 + 21313647 21313982 LTR12C 1709 - 800 937 161152 47 197 0 25 1 0 65 chain 142095 chr13 115169878 + 21317825 21319635 L1PA8 5853 - 0 1810 25803 93 1 0 19 2 1 52 1 0 9 3 2 25 5 0 42 3 1 45 1 0 198 1 3 29 1 10 125 0 2 143 6 1 42 1 3 102 0 1 174 7 6 266 0 2 31 2 3 274 1 0 106 chain 7144 chr13 115169878 + 21342743 21342827 MER30B 195 + 101 191 176452 8 0 6 76 chain 25105 chr13 115169878 + 21454293 21454596 AluSg7 307 + 3 305 104261 128 0 1 56 1 0 75 1 0 42 chain 21557 chr13 115169878 + 21467978 21468259 AluSp 311 - 7 290 121934 24 7 8 130 4 5 116 chain 26345 chr13 115169878 + 21488983 21489284 AluYf5 307 - 8 306 98637 181 2 0 108 1 0 9 chain 24045 chr13 115169878 + 21511779 21512063 AluYc3 301 - 8 293 110083 178 1 2 105 chain 23238 chr13 115169878 + 21515740 21516021 AluSg7 307 - 16 297 114505 281 chain 4603 chr13 115169878 + 21530847 21530910 HAL1 992 - 466 528 199583 14 1 0 48 chain 23470 chr13 115169878 + 21556454 21556739 AluSp 311 - 16 301 113270 121 0 1 47 1 0 116 chain 7442 chr13 115169878 + 21559025 21559167 L1MA4A 3247 + 2276 2409 174503 18 31 23 50 1 0 42 chain 5323 chr13 115169878 + 21586032 21586122 MER6A 605 - 0 88 191789 5 1 0 37 7 6 40 chain 47123 chr13 115169878 + 21602070 21602589 L1PA3long 6157 - 0 519 61110 20 1 0 129 0 1 369 chain 7932 chr13 115169878 + 21606707 21606819 MER30 238 + 126 237 171432 6 5 0 7 1 0 77 0 5 16 chain 23358 chr13 115169878 + 21610639 21610913 AluSg 306 + 8 282 113883 274 chain 9496 chr13 115169878 + 21646899 21647035 MER44A 345 + 176 323 163093 43 0 7 26 0 1 53 2 5 12 chain 12628 chr13 115169878 + 21661082 21661312 L1MB1 2102 + 101 367 149734 54 36 75 41 7 5 25 1 0 66 chain 6867 chr13 115169878 + 21669428 21669630 MER57E1 380 + 12 249 178445 18 84 82 38 3 42 25 2 0 32 chain 3244 chr13 115169878 + 21697932 21697974 LTR67B 553 - 16 59 220135 6 0 1 36 chain 13771 chr13 115169878 + 21704663 21705163 LTR12 884 + 107 627 145361 8 1 0 24 3 34 11 43 0 66 1 0 2 0 91 35 231 174 75 chain 2063 chr13 115169878 + 21704710 21704753 LTR12 884 + 274 316 173363 39 1 0 3 chain 84573 chr13 115169878 + 21709456 21710521 MER11B 1079 - 16 1079 41690 292 8 2 196 11 10 49 1 2 39 0 1 213 3 0 29 0 5 160 6 7 58 chain 16550 chr13 115169878 + 21743660 21743853 MER83B 357 + 151 343 136798 6 1 0 186 chain 66148 chr13 115169878 + 21748127 21748885 L1PA5 6144 + 5383 6144 50025 405 0 8 330 1 0 9 4 0 9 chain 115048 chr13 115169878 + 21757447 21759129 L1PA7 6471 + 5089 6461 32775 174 0 6 43 322 0 819 6 7 151 0 5 167 chain 23488 chr13 115169878 + 21759156 21759446 AluSp 311 + 11 296 113182 121 3 0 16 2 0 148 chain 150228 chr13 115169878 + 21759853 21761541 SVA_F 1814 - 4 1814 24579 7 3 0 5 0 1 708 0 1 8 10 37 4 0 1 75 0 15 146 0 80 722 chain 27585 chr13 115169878 + 21785462 21785813 THE1A 353 + 0 353 94395 108 1 0 219 0 3 23 chain 53472 chr13 115169878 + 21785813 21786477 THE1A-int 1579 + 0 663 56707 41 5 4 39 1 0 59 3 4 516 chain 7605 chr13 115169878 + 21792291 21792387 Charlie1a 1436 + 1323 1418 173515 40 1 0 55 chain 137890 chr13 115169878 + 21824527 21826055 L1PA4 6152 - 1 1528 26497 259 1 0 1268 chain 23652 chr13 115169878 + 21846470 21846753 AluSp 311 + 1 287 112297 90 0 3 193 chain 10881 chr13 115169878 + 21849465 21849608 L1PA15 4387 - 786 930 156660 22 0 3 6 2 0 113 chain 181800 chr13 115169878 + 21852397 21854455 L1PA4 6152 - 3 2070 20808 52 0 4 54 0 1 140 1 0 593 1 5 581 0 1 636 chain 8960 chr13 115169878 + 21892237 21892347 L1PA4 6152 + 6043 6151 165829 49 4 2 57 chain 3249 chr13 115169878 + 21914431 21914471 MIR3 191 - 80 120 220019 40 chain 3700 chr13 115169878 + 21920154 21920196 5S 121 + 0 42 211933 42 chain 4386 chr13 115169878 + 21943949 21944001 5S 121 - 32 84 202123 52 chain 10230 chr13 115169878 + 21944552 21944984 MER2 342 + 159 294 159471 92 297 0 43 chain 23476 chr13 115169878 + 21978616 21978907 AluY 311 + 11 297 113233 27 5 1 84 2 0 9 0 1 164 chain 374885 chr13 115169878 + 21980530 21985456 L1PA7 6471 - 4 6468 10924 18 26 28 98 1 2 4 1 0 324 1 4 145 286 37 190 10 17 126 0 5 484 1 0 243 0 1 61 0 4 97 0 1 7 8 7 37 5 9 328 1 5 579 1 0 53 0 4 19 7 1729 191 3 5 107 0 3 116 0 1 348 0 24 35 0 3 317 6 5 242 0 1 400 chain 161929 chr13 115169878 + 22021459 22023374 SVA_F 1814 + 10 1812 23076 877 175 0 60 0 15 32 1 0 15 1 0 80 0 49 674 chain 11231 chr13 115169878 + 22022337 22022504 SVA_F 1814 + 1001 1168 104699 167 chain 3370 chr13 115169878 + 22026208 22026249 U6 107 - 50 91 217664 41 chain 7858 chr13 115169878 + 22035683 22035814 MSTB 430 + 270 406 171948 34 20 25 77 chain 15634 chr13 115169878 + 22036606 22036797 AluSc5 308 - 0 190 139483 182 1 0 8 chain 26620 chr13 115169878 + 22044867 22045277 L1M1 2793 - 120 536 97593 45 1 0 36 0 1 68 0 1 88 1 0 47 11 7 40 5 4 13 21 32 34 chain 23454 chr13 115169878 + 22070915 22071206 AluY 311 + 3 288 113352 120 7 1 164 chain 2530 chr13 115169878 + 22086312 22086478 L1MD1 2063 - 288 454 232743 32 118 118 16 chain 26568 chr13 115169878 + 22119095 22119527 L1MA5A 2387 + 1771 2187 97775 37 10 7 18 0 1 76 13 12 18 3 0 4 2 0 70 5 2 17 0 1 6 2 0 68 1 0 22 1 0 26 2 0 31 chain 8500 chr13 115169878 + 22125440 22125549 U6 107 - 0 107 168292 6 2 0 101 chain 183409 chr13 115169878 + 22125583 22127636 L1PA4 6152 - 6 2067 20627 388 0 4 446 0 4 64 0 1 803 1 0 84 0 4 191 4 0 72 chain 190350 chr13 115169878 + 22127636 22129742 L1PA4 6152 + 1950 4071 20012 250 0 2 921 0 9 45 1 0 81 0 5 808 chain 56017 chr13 115169878 + 22135855 22136476 L1PA3long 6157 - 0 624 55113 20 1 0 35 0 4 565 chain 6467 chr13 115169878 + 22138111 22138289 L1MCa 1829 - 975 1175 181496 26 81 89 32 0 4 32 0 10 7 chain 37086 chr13 115169878 + 22156665 22157132 LTR10F 562 + 0 561 73405 33 0 4 7 0 4 58 0 84 41 3 0 80 0 5 245 chain 91117 chr13 115169878 + 22162170 22163593 HERVIP10FH-int 2884 + 1441 2876 39256 27 6 1 115 11 220 102 0 1 143 0 1 132 0 1 67 1 0 23 1 0 30 4 3 103 0 2 119 0 4 82 0 1 21 1 0 66 1 0 50 1 0 17 4 3 10 11 5 34 207 22 9 2 0 16 2 0 5 chain 40151 chr13 115169878 + 22163652 22164187 LTR10F 562 + 0 562 69105 106 0 28 93 2 5 12 14 10 46 4 0 61 8 11 132 0 1 57 chain 358935 chr13 115169878 + 22164187 22169127 L1PA8A 6298 + 1780 6290 11379 70 4 0 21 0 3 299 441 0 252 0 9 76 2 0 107 1 8 20 0 1 49 5 0 37 1 0 232 6 10 167 1 12 206 1 2 11 12 6 27 2 0 29 0 3 9 1 4 248 0 1 132 0 2 45 0 1 67 5 1 192 1 0 337 0 2 50 0 3 68 1 0 226 23 20 44 16 1 302 0 1 296 3 2 77 0 2 204 0 2 514 chain 25116 chr13 115169878 + 22171784 22172091 AluY 311 + 0 304 104191 36 5 1 95 0 1 171 chain 27238 chr13 115169878 + 22176379 22176686 AluYk4 311 + 0 308 95470 276 0 1 31 chain 9138 chr13 115169878 + 22194551 22194660 L1PA16 3655 + 3469 3578 164872 109 chain 2093 chr13 115169878 + 22194910 22194947 MLT1C 463 - 357 400 237680 11 4 10 22 chain 4774 chr13 115169878 + 22198697 22198756 MSTB2 466 + 360 419 197655 59 chain 26129 chr13 115169878 + 22221512 22221873 L1PA5 6144 - 20 383 99485 73 4 1 23 21 18 13 1 0 30 4 13 192 chain 8453 chr13 115169878 + 22235347 22235637 MSTB2 466 - 17 372 168549 81 136 175 17 20 46 36 chain 24063 chr13 115169878 + 22253798 22254117 AluY 311 + 3 304 109964 130 15 0 18 7 4 149 chain 27671 chr13 115169878 + 22287591 22287912 L1PA5 6144 + 5811 6132 94142 321 chain 2758 chr13 115169878 + 22300213 22300279 HAL1-2a_MD 234 + 0 114 229346 21 9 0 9 8 65 19 chain 3116 chr13 115169878 + 22307444 22307478 MER102c 337 + 295 329 222637 34 chain 32259 chr13 115169878 + 22367990 22368398 MLT2A1 477 - 67 477 80423 25 4 0 142 1 2 68 0 4 28 3 4 137 chain 3439 chr13 115169878 + 22377280 22377320 Tigger4b 360 - 87 127 216429 40 chain 4476 chr13 115169878 + 22406868 22406969 LTR12 884 - 506 590 201050 12 2 1 21 22 8 8 2 0 34 chain 19976 chr13 115169878 + 22427469 22427711 AluY 311 + 14 293 127218 118 0 1 6 1 37 117 chain 10808 chr13 115169878 + 22429376 22429692 L1PB1 5432 - 42 322 156949 20 1 0 24 48 33 17 3 0 16 1 0 32 30 28 51 19 14 11 13 11 17 7 0 6 chain 553695 chr13 115169878 + 22429870 22436040 L1PA3long 6157 - 0 6151 984 230 7 14 1968 7 8 754 1 0 1111 0 1 509 31 2 280 0 1 263 0 1 1009 chain 353422 chr13 115169878 + 22436049 22441040 L1PB1 5432 - 371 5415 11513 30 15 17 104 1 2 36 4 10 62 2 4 89 0 2 75 9 6 103 12 17 25 1 5 650 4 8 79 10 1 104 0 4 310 36 38 59 6 9 217 0 1 105 0 3 51 0 1 4 3 0 15 7 15 281 1 0 18 1 0 63 1 0 11 5 2 413 0 1 364 0 2 170 5 0 56 8 9 13 2 1 84 1 3 36 9 11 65 4 5 108 9 9 55 16 25 139 0 5 77 0 1 5 3 2 227 13 18 71 9 14 25 1 0 88 27 18 20 1 0 6 20 36 216 6 0 10 chain 23930 chr13 115169878 + 22450585 22451027 LTR12F 595 - 40 595 110757 12 18 0 51 72 0 9 10 82 141 0 90 13 1 41 12 1 2 102 chain 76314 chr13 115169878 + 22474697 22475553 L1PA4 6152 + 5299 6152 45309 848 3 0 5 chain 4566 chr13 115169878 + 22494405 22494580 LTR12C 1709 - 991 1043 195318 35 123 0 17 chain 15482 chr13 115169878 + 22494580 22494756 LTR12C 1709 - 605 781 139958 176 chain 29357 chr13 115169878 + 22523530 22523848 AluYb8 318 - 0 318 87257 318 chain 21393 chr13 115169878 + 22526396 22526666 L1PA10 4194 + 1465 1734 122532 146 1 0 123 chain 42203 chr13 115169878 + 22526666 22527179 L1PA8 5853 + 5345 5853 66395 263 2 0 71 1 0 61 2 1 19 1 0 93 chain 28097 chr13 115169878 + 22595170 22595467 AluYb8 318 + 7 304 92660 297 chain 44146 chr13 115169878 + 22697361 22697907 L1PA6 6164 - 2 529 64015 74 19 0 453 chain 2938 chr13 115169878 + 22752688 22752719 MIR 256 - 120 151 226353 31 chain 24763 chr13 115169878 + 22757405 22757887 L1PB1 5432 - 8 483 106095 4 1 0 16 1 0 13 1 0 21 1 0 24 24 19 27 12 0 19 1 0 31 4 19 10 2 1 53 2 0 5 20 17 7 1 0 15 7 8 7 0 5 35 0 1 118 chain 164471 chr13 115169878 + 22758796 22760606 L1PA3long 6157 - 0 1811 22747 5 0 2 1375 1 0 429 chain 29110 chr13 115169878 + 22878235 22878613 THE1C 375 - 1 375 88502 187 5 0 6 0 1 180 chain 68491 chr13 115169878 + 22881085 22881993 L1PA7 6471 - 2 885 49043 171 24 23 309 1 0 304 12 17 21 15 0 4 13 0 34 chain 78527 chr13 115169878 + 22887036 22887966 L1PA7 6471 - 6 938 44254 6 2 0 327 0 1 514 0 3 81 chain 242038 chr13 115169878 + 22887966 22891034 L1P3 4156 - 1089 4144 16669 323 0 3 91 0 1 20 16 0 177 0 1 43 10 11 249 0 1 121 3 1 333 8 7 842 0 1 522 1 0 69 1 0 239 chain 26594 chr13 115169878 + 22903091 22903395 L1PA2 6032 + 5722 6032 97683 17 0 3 39 1 4 247 chain 535262 chr13 115169878 + 22920225 22926336 L1PA4 6152 + 3 6143 3558 879 0 1 95 0 3 471 0 5 88 0 1 840 0 4 1125 0 1 441 0 2 392 0 4 380 0 1 565 0 5 218 0 2 147 2 1 23 6 7 439 chain 21286 chr13 115169878 + 22926620 22926898 AluY 311 + 18 298 122912 114 13 15 151 chain 22112 chr13 115169878 + 22929551 22929806 AluY 311 + 11 269 119733 61 0 3 194 chain 62716 chr13 115169878 + 22935222 22935909 L1PA2 6032 - 2 689 51580 687 chain 90446 chr13 115169878 + 22936180 22937476 L1PA13 3608 + 2127 3437 39488 14 5 24 344 1 2 143 1 2 103 1 0 74 3 6 54 17 17 41 5 7 79 11 9 86 2 0 27 11 10 104 2 0 61 1 0 55 1 0 7 2 0 41 chain 222338 chr13 115169878 + 22953924 22956417 L1PA4 6152 - 16 2514 17736 132 10 13 499 0 2 100 0 1 379 1 0 4 0 1 1119 1 0 248 chain 3166 chr13 115169878 + 22986063 22986097 L1M4c 1769 - 85 119 221609 34 chain 8212 chr13 115169878 + 23010483 23010574 L1PA4 6152 + 6050 6141 169875 91 chain 102808 chr13 115169878 + 23049678 23050861 L1P1 4361 - 122 1308 36052 91 1 0 629 1 2 7 0 1 262 0 3 85 1 0 106 chain 143817 chr13 115169878 + 23050861 23052481 L1PA5 6144 + 4526 6144 25514 826 3 0 644 0 1 147 chain 29410 chr13 115169878 + 23055203 23055513 AluYa5 310 - 0 310 87022 310 chain 10486 chr13 115169878 + 23068539 23068676 L1PA8 5853 + 5718 5853 158303 22 2 1 19 1 0 93 chain 95881 chr13 115169878 + 23095666 23096715 L1PA3long 6157 - 10 1058 37852 769 1 0 279 chain 392265 chr13 115169878 + 23100480 23105016 L1PA6 6164 + 1609 6161 10386 206 0 1 512 1 2 62 0 1 200 0 1 552 0 1 38 1 0 4 0 1 33 2 1 1425 1 0 366 0 5 298 0 4 400 0 1 277 3 11 103 5 0 47 chain 87285 chr13 115169878 + 23106922 23107898 L1PA3long 6157 - 1 978 40653 4 1 0 689 0 4 112 2 0 168 chain 29244 chr13 115169878 + 23107899 23108209 AluYa5 310 - 0 310 87830 310 chain 50275 chr13 115169878 + 23126865 23127621 LTR12D 1347 - 0 946 58804 147 0 200 157 20 22 115 14 7 115 32 0 16 2 33 36 3 0 94 1 0 4 chain 73452 chr13 115169878 + 23137949 23138827 L1PA7 6471 - 2 877 46812 8 6 0 133 1 0 4 0 1 705 1 4 20 chain 542883 chr13 115169878 + 23148875 23154958 L1PA3long 6157 + 2 6157 2361 149 1 2 628 0 128 1648 76 0 178 0 1 1449 0 2 167 0 4 949 0 2 692 1 0 5 0 10 136 0 1 4 chain 380478 chr13 115169878 + 23155056 23160116 L1PA8 5853 - 0 5135 10739 85 13 12 14 7 6 30 1 0 4 18 23 67 6 4 44 1 0 471 0 12 74 5 9 33 0 3 27 1 2 21 2 1 4 0 1 180 2 1 260 4 19 105 3 1 347 0 2 770 1 0 14 0 1 273 10 14 389 0 1 329 1 0 12 0 1 113 0 1 146 11 11 333 11 23 319 2 0 6 0 2 41 0 1 18 11 7 8 0 4 120 13 15 71 3 0 166 0 3 5 0 17 15 9 13 11 chain 16642 chr13 115169878 + 23164704 23164908 L1PA5 6144 + 5941 6144 136548 60 0 1 137 2 0 5 chain 14460 chr13 115169878 + 23165041 23165244 L1PA8 5853 + 5645 5853 143016 9 0 8 14 4 3 65 1 0 16 2 1 92 chain 19608 chr13 115169878 + 23185031 23185273 AluY 311 + 50 294 128364 73 1 0 9 0 2 97 0 1 62 chain 22823 chr13 115169878 + 23186560 23186814 L1PA3long 6157 - 0 254 116485 254 chain 440137 chr13 115169878 + 23205189 23210624 L1PA7 6471 - 4 6465 9053 8 3 0 138 0 1 12 1 0 552 0 1 134 1 0 672 12 0 174 0 1 94 0 8 94 3 0 345 0 1 218 0 3 44 5 0 414 0 4 278 6 12 151 0 1 284 59 30 94 1 2 54 0 2 6 7 0 17 0 7 284 1 0 6 0 1 155 0 5 28 0 2 360 14 8 172 0 3 13 0 1 62 2 0 259 0 9 111 0 1040 47 2 1 38 chain 30985 chr13 115169878 + 23252285 23252671 MLT2A1 477 + 0 385 82541 169 4 1 11 0 1 21 1 2 180 chain 21833 chr13 115169878 + 23255169 23255616 LTR12 884 + 0 674 120878 24 1 0 29 6 52 10 1 0 16 0 91 25 1 0 41 6 10 15 1 0 23 1 2 36 8 6 63 42 39 35 13 4 24 2 105 24 chain 82178 chr13 115169878 + 23258113 23259436 L1PA7 6471 - 2 1046 42690 79 0 1 62 8 7 33 295 8 396 0 2 95 6 7 79 0 2 74 0 3 196 chain 29556 chr13 115169878 + 23275604 23275922 AluYb8 318 - 0 318 86397 318 chain 8440 chr13 115169878 + 23289862 23290095 L1MD1 2063 - 161 358 168620 34 12 25 16 55 14 34 14 10 28 1 0 22 3 0 14 chain 35258 chr13 115169878 + 23301642 23302450 L1PB1 5432 + 4739 5273 75851 65 0 4 124 0 8 163 288 14 17 3 0 13 1 0 9 2 0 3 2 0 9 5 3 49 2 1 15 1 0 37 chain 3573 chr13 115169878 + 23307727 23307787 L1MA6 2487 + 2340 2388 214086 37 12 0 11 chain 23189 chr13 115169878 + 23328208 23328494 AluSg7 307 - 13 296 114730 15 4 0 147 0 1 120 chain 27477 chr13 115169878 + 23353935 23354302 THE1C 375 + 0 373 94727 127 8 12 85 0 3 123 1 0 23 chain 8326 chr13 115169878 + 23359142 23359347 L1MA8 2339 + 2010 2187 169244 57 74 49 45 4 1 25 chain 83407 chr13 115169878 + 23387788 23388759 LTR5_Hs 974 - 0 974 42154 57 0 2 4 1 0 330 0 1 294 0 1 285 chain 14346 chr13 115169878 + 23393222 23393577 L1MA6 2487 - 83 374 143393 7 1 0 18 3 0 39 109 65 43 24 8 111 chain 14443 chr13 115169878 + 23394034 23394229 L1MA6 2487 + 1641 1837 143068 110 1 3 74 1 0 9 chain 17744 chr13 115169878 + 23394700 23394955 L1PA8 5853 + 5555 5810 133584 9 1 0 43 2 0 68 17 15 50 2 1 15 0 6 48 chain 22403 chr13 115169878 + 23396405 23396714 L1PA8 5853 - 3 311 118468 90 1 0 19 2 1 12 0 6 34 1 0 6 1 0 72 7 5 41 1 0 22 chain 130662 chr13 115169878 + 23432560 23434034 SVA_D 2077 - 13 2019 27931 609 0 1 9 0 2 37 1 490 266 0 40 218 0 3 219 3 0 112 chain 117506 chr13 115169878 + 23444942 23446469 THE1B-int 1605 + 0 1599 31964 48 0 1 105 0 1 118 0 6 95 22 86 216 1 2 98 0 1 61 6 4 188 6 7 456 0 1 64 2 1 36 1 0 4 chain 37825 chr13 115169878 + 23454429 23454900 LTR2B 499 + 12 499 72374 62 3 0 37 0 19 178 0 1 8 1 0 182 chain 15715 chr13 115169878 + 23455906 23456187 MER4A1 472 + 127 422 139228 7 1 0 87 60 73 109 1 3 16 chain 275382 chr13 115169878 + 23459233 23463514 Harlequin-int 5206 + 126 5202 14907 21 2 0 79 0 1 61 0 1 17 1 3 49 0 5 36 1 7 78 2 0 184 0 2 216 1 779 185 0 1 100 17 24 199 10 1 16 4 3 64 5 4 229 1 0 250 0 6 181 1 0 392 126 135 35 0 1 26 17 17 45 63 64 30 7 0 9 0 7 27 174 174 253 203 197 218 36 37 348 8 8 228 6 3 20 chain 101989 chr13 115169878 + 23465008 23466905 MER4-int 2692 + 1085 2692 36266 20 1 0 48 1 0 17 300 0 169 0 1 23 5 0 27 1 17 25 3 2 19 17 18 62 13 17 168 1 0 34 1 3 58 3 5 73 2 0 47 18 10 121 0 1 33 5 6 19 22 19 56 1 0 79 8 5 86 0 2 5 6 5 41 2 4 36 2 1 46 1 0 54 1 11 49 5 2 20 8 7 17 7 8 11 chain 14996 chr13 115169878 + 23474318 23474494 LTR12C 1709 - 756 931 141332 116 1 0 59 chain 40491 chr13 115169878 + 23477100 23477590 MER9a1 513 + 0 513 68606 206 0 1 42 0 22 242 chain 17372 chr13 115169878 + 23494509 23494740 L1MA5A 2387 + 1240 1471 134592 48 1 0 74 0 1 108 chain 55833 chr13 115169878 + 23497169 23498161 L1PA7 6471 + 5789 6467 55229 119 0 1 228 317 0 175 9 11 144 chain 23327 chr13 115169878 + 23523392 23523674 AluY 311 + 37 311 114046 93 8 0 181 chain 24785 chr13 115169878 + 23525292 23525634 MER9a3 513 + 111 505 105969 68 9 33 46 0 17 18 2 12 131 0 1 68 chain 23888 chr13 115169878 + 23542631 23542993 THE1D 372 - 0 372 110972 35 5 4 62 9 3 72 3 8 83 4 6 24 4 14 61 chain 8780 chr13 115169878 + 23552651 23552783 MLT1A 405 + 13 146 166764 12 1 0 7 6 7 43 0 1 63 chain 56436 chr13 115169878 + 23557598 23558602 MER11D 897 - 195 897 54887 61 325 0 24 2 25 592 chain 29830 chr13 115169878 + 23557667 23557984 AluYb8 318 - 1 318 85352 317 chain 5152 chr13 115169878 + 23563414 23563528 MER2 342 - 0 123 193526 11 8 9 22 9 10 24 7 14 33 chain 256641 chr13 115169878 + 23581530 23584663 HERVK9-int 4720 + 36 4720 15900 13 8 5 4 1 0 66 1 0 7 2 1 30 1 0 800 1 0 524 10 934 42 5 3 186 51 689 970 1 0 410 chain 42985 chr13 115169878 + 23584663 23585177 MER9a2 513 + 0 513 65432 15 1 0 7 0 1 127 0 1 305 2 0 57 chain 24159 chr13 115169878 + 23585888 23586182 AluY 311 + 4 297 109435 125 3 0 149 0 2 17 chain 35353 chr13 115169878 + 23591781 23592205 MER11B 1079 + 0 421 75727 259 3 0 162 chain 50829 chr13 115169878 + 23624275 23624896 PABL_A 660 + 0 650 58415 20 0 15 49 0 9 91 0 1 253 0 2 178 0 2 30 chain 22575 chr13 115169878 + 23645426 23645695 AluSc8 310 + 11 299 117695 41 0 16 64 0 3 164 chain 10012 chr13 115169878 + 23646248 23646431 L1PA15 4387 - 79 253 160530 38 6 3 43 25 20 19 1 0 51 chain 23114 chr13 115169878 + 23659717 23660078 MER39B 650 + 297 650 115076 44 5 6 192 26 18 35 1 0 24 8 9 5 1 0 20 chain 11057 chr13 115169878 + 23665999 23666332 THE1D 372 + 1 332 155982 12 0 2 36 9 0 23 4 5 20 140 142 42 6 8 41 chain 25347 chr13 115169878 + 23677343 23677640 AluSq10 312 - 15 312 102976 297 chain 10832 chr13 115169878 + 23684203 23684465 L1PB1 5432 - 10 254 156854 13 10 9 9 1 0 18 4 3 17 0 1 6 2 0 10 11 10 15 9 0 15 2 0 14 1 0 32 18 17 12 2 1 11 0 1 30 chain 142869 chr13 115169878 + 23701532 23703229 LTR12C 1709 + 0 1702 25671 133 0 5 331 0 1 367 1 0 274 1 0 6 2 0 107 0 4 408 1 0 66 chain 23876 chr13 115169878 + 23705456 23705744 AluY 311 + 10 298 111043 288 chain 27437 chr13 115169878 + 23725860 23726226 THE1C 375 - 2 368 94858 24 1 0 195 8 12 22 3 0 113 chain 6461 chr13 115169878 + 23726726 23726813 HY3 101 - 1 89 181547 75 2 3 10 chain 27866 chr13 115169878 + 23729881 23730295 L1PB3 3668 + 2567 2984 93468 99 12 15 73 6 5 89 0 1 109 6 6 20 chain 13461 chr13 115169878 + 23742197 23742363 L1MA2 4263 - 679 845 146480 166 chain 22345 chr13 115169878 + 23743542 23743811 AluSc 308 + 5 274 118724 136 3 0 6 0 3 124 chain 24563 chr13 115169878 + 23766042 23766330 AluY 311 + 0 299 107175 39 0 10 83 0 1 166 chain 21873 chr13 115169878 + 23773002 23773261 AluY 311 + 37 297 120737 95 0 1 164 chain 5071 chr13 115169878 + 23783814 23783937 Tigger5 388 + 199 317 194418 36 1 0 26 42 38 18 chain 2988 chr13 115169878 + 23796185 23796219 MER57B2 428 + 0 34 225299 34 chain 22044 chr13 115169878 + 23797820 23798083 AluSg 306 + 0 259 120048 30 4 0 229 chain 21056 chr13 115169878 + 23806678 23806928 AluY 311 + 39 290 123706 93 0 1 157 chain 24897 chr13 115169878 + 23815010 23815302 AluY 311 + 0 297 105360 89 0 4 39 0 1 164 chain 400622 chr13 115169878 + 23830523 23835376 L1PA6 6164 - 2 4709 10076 10 0 1 822 8 19 50 179 1 1306 0 1 248 1 4 63 0 1 221 1 2 196 1 0 27 0 1 1296 0 10 405 0 4 19 chain 263549 chr13 115169878 + 23857010 23860206 L1P3 4156 - 944 4155 15506 577 6 8 108 0 2 320 0 10 559 0 1 52 0 1 113 1 0 182 6 7 436 0 2 119 39 38 357 1 0 58 16 15 246 chain 5104 chr13 115169878 + 23861000 23861120 MER44D 709 - 593 709 194052 48 7 17 15 32 18 18 chain 44070 chr13 115169878 + 23871405 23871917 MER9a2 513 - 0 513 64134 252 0 1 260 chain 32589 chr13 115169878 + 23887865 23888279 MLT2A1 477 + 0 415 79874 169 0 4 68 2 3 141 4 0 30 chain 248378 chr13 115169878 + 23888664 23891950 HERVL-int 5654 + 7 5654 16342 45 0 2629 717 5 0 4 0 1 863 0 1 98 4 8 419 0 1 231 293 0 25 0 3 292 0 3 22 5 4 51 1 7 64 0 1 89 0 3 49 0 8 9 chain 31314 chr13 115169878 + 23891950 23892410 MLT2A1 477 + 0 477 81968 138 0 1 30 1 5 31 0 15 102 2 1 62 49 47 45 chain 18403 chr13 115169878 + 23925452 23925822 THE1B 368 + 0 368 131778 108 0 13 13 85 59 20 1 5 10 6 14 64 8 7 55 chain 14197 chr13 115169878 + 23959292 23959490 Tigger1 2417 - 630 830 143891 65 16 18 117 chain 25987 chr13 115169878 + 23961998 23962542 L1PB3 3668 + 3104 3466 100067 117 4 5 62 1 0 102 2 1 33 181 0 42 chain 49107 chr13 115169878 + 23971869 23974533 MER4E 760 - 7 760 59663 69 10 11 100 653 8 94 29 7 93 0 2 51 1294 42 4 0 1 5 0 2 240 0 2 22 chain 34448 chr13 115169878 + 23973204 23974222 LTR19A 502 + 0 502 76994 162 561 7 50 3 40 52 1 2 189 chain 84023 chr13 115169878 + 23977375 23978385 L1P3 4156 - 163 1196 41896 139 1 13 265 0 3 22 0 4 64 2 1 452 0 5 65 chain 189621 chr13 115169878 + 23978386 23980675 L1PA7 6471 + 4133 6467 20090 473 0 2 65 0 12 311 1 0 282 0 4 80 1 4 150 0 11 86 1 0 10 0 3 92 5 8 185 4 11 124 0 1 89 0 1 148 1 0 34 2 3 145 chain 22063 chr13 115169878 + 24000320 24001060 MER4A1 472 - 10 471 119954 60 7 9 68 1 2 35 387 97 50 1 0 79 14 21 11 1 0 7 5 8 14 chain 24055 chr13 115169878 + 24018862 24019198 THE1B 368 + 22 368 110018 146 1 0 32 0 2 5 9 10 89 5 13 49 chain 4989 chr13 115169878 + 24020579 24020634 L1PA3long 6157 - 1019 1074 194299 55 chain 91015 chr13 115169878 + 24020634 24021637 L1PA3long 6157 + 5153 6157 39286 854 1 2 148 chain 2650 chr13 115169878 + 24034379 24034498 MIRb 242 - 63 180 231010 19 41 39 23 18 20 11 2 0 5 chain 3188 chr13 115169878 + 24038957 24038994 MER47A 366 + 66 103 221178 37 chain 14789 chr13 115169878 + 24038994 24039283 THE1B 368 + 0 307 141970 12 0 15 20 35 52 12 6 7 51 1 0 32 16 0 13 0 4 14 1 0 10 1 0 65 chain 66098 chr13 115169878 + 24057526 24058873 MER4-int 2692 - 230 1258 50056 128 346 14 34 0 5 9 2 0 85 3 0 34 11 12 35 0 1 26 10 11 50 2 0 69 1 2 25 5 6 25 2 0 5 8 10 81 0 4 21 4 3 6 0 1 4 0 3 102 0 1 64 13 14 75 0 1 62 chain 29955 chr13 115169878 + 24057654 24057973 AluYb8 318 - 0 318 84957 192 1 0 126 chain 28081 chr13 115169878 + 24069368 24069663 AluYf4 310 + 0 295 92705 295 chain 9849 chr13 115169878 + 24083176 24083337 Tigger3b 1229 + 574 920 161347 5 3 0 11 0 189 109 10 9 23 chain 56722 chr13 115169878 + 24098614 24099395 LTR12C 1709 + 574 1708 54705 79 0 119 65 1 0 156 0 166 56 45 14 227 0 101 68 1 0 83 chain 405479 chr13 115169878 + 24099476 24104367 HERV9-int 5642 + 0 4825 9929 795 10 9 261 80 0 41 3 0 4 1 0 120 0 9 341 4 2 227 0 1 614 3 0 40 1 0 566 1 0 122 0 1 341 0 1 138 15 16 423 4 0 48 4 18 572 0 2 100 0 1 12 chain 3568 chr13 115169878 + 24106178 24106361 LTR12C 1709 + 657 773 203363 28 129 6 19 0 56 7 chain 7334 chr13 115169878 + 24106376 24106475 LTR12C 1709 + 654 831 175199 63 0 78 36 chain 3617 chr13 115169878 + 24114455 24114504 L1PB1 5432 - 10 57 213391 18 1 0 11 1 0 18 chain 3772 chr13 115169878 + 24114818 24114863 LTR47A 437 - 90 135 210784 45 chain 22796 chr13 115169878 + 24138792 24139077 AluSz6 309 + 8 303 116599 12 2 11 250 0 1 21 chain 29170 chr13 115169878 + 24158239 24158749 L1PB1 5432 - 9 490 88195 19 1 0 12 0 3 19 1 0 24 2 0 15 7 4 16 8 0 11 3 0 4 1 0 16 1 0 42 20 18 51 3 1 9 5 1 11 1 0 13 1 0 20 1 0 12 1 0 101 1 0 4 1 2 53 chain 338739 chr13 115169878 + 24167943 24172073 L1P3 4156 + 0 4139 11931 197 19 19 35 1 0 68 2 1 89 1 0 374 10 0 29 0 1 389 0 1 52 0 6 176 0 1 956 1 5 91 0 9 130 0 1 39 0 2 20 2 0 5 0 2 3 0 4 20 1 0 23 8 0 75 2 0 103 2 3 164 0 4 92 0 3 296 1 0 5 1 2 108 1 0 504 2 0 7 2 1 24 chain 17195 chr13 115169878 + 24172315 24172518 L1PA7 6471 + 6251 6454 135049 203 chain 36678 chr13 115169878 + 24173460 24174081 MER4B 649 - 9 647 73988 7 1 0 71 5 4 75 62 59 50 0 9 20 23 0 20 8 1 90 1 0 35 0 42 125 0 2 28 chain 2875 chr13 115169878 + 24193382 24193416 L1MB8 1703 + 1474 1508 227429 34 chain 25019 chr13 115169878 + 24218376 24218746 THE1C 375 + 2 375 104686 36 1 6 65 36 34 43 0 1 163 1 0 25 chain 152108 chr13 115169878 + 24236030 24238510 L1PREC2 3366 - 124 2508 24325 4 1 0 18 14 9 13 212 128 7 1 0 10 8 5 15 0 1 22 3 1 39 130 106 9 3 0 5 1 0 41 6 5 50 12 9 34 1 0 175 0 12 503 0 1 56 0 1 103 1 0 169 0 6 45 0 1 185 2 0 5 0 2 104 0 9 9 16 19 69 0 1 49 1 0 5 7 3 94 0 1 80 0 3 143 chain 11714 chr13 115169878 + 24251722 24251893 LTR12C 1709 - 562 940 153411 26 6 53 24 1 2 46 0 159 68 chain 41840 chr13 115169878 + 24255909 24256461 MER41A 554 + 0 554 66841 135 2 0 31 0 1 128 0 1 22 0 1 7 1 0 71 1 0 4 2 5 114 0 1 27 1 0 6 chain 40050 chr13 115169878 + 24260191 24260743 MER41A 554 + 0 554 69249 318 1 0 5 6 7 39 10 10 17 5 6 119 0 1 32 chain 40267 chr13 115169878 + 24267545 24268076 MER41A 554 - 10 554 68919 29 11 17 24 0 5 38 0 1 21 1 3 245 1 0 161 chain 4922 chr13 115169878 + 24278705 24278768 L1MA5A 2387 - 84 146 196027 8 1 0 54 chain 9680 chr13 115169878 + 24295025 24295170 THE1D 372 - 38 185 162196 35 0 1 74 17 18 19 chain 10620 chr13 115169878 + 24308576 24308703 MER61-int 3695 + 1483 1612 157735 89 0 2 38 chain 545591 chr13 115169878 + 24353617 24359774 L1PA5 6144 + 0 6144 1999 455 1 0 72 0 4 3199 0 5 198 0 1 642 36 0 1373 0 14 181 chain 4841 chr13 115169878 + 24387585 24387688 MER2 342 - 182 281 196869 23 0 1 4 5 4 38 16 12 17 chain 3772 chr13 115169878 + 24392231 24392273 MER57B2 428 - 1 43 210789 42 chain 19954 chr13 115169878 + 24437478 24437805 Tigger4b 360 + 0 360 127291 28 2 26 62 10 21 156 32 30 37 chain 26135 chr13 115169878 + 24497476 24497790 L1PA5 6144 + 5780 6106 99461 191 0 12 123 chain 68118 chr13 115169878 + 24526308 24527299 LTR12D 1347 - 325 1347 49196 71 0 1 141 3 0 92 1 18 112 3 0 19 47 32 200 0 36 18 17 17 38 27 25 202 chain 8996 chr13 115169878 + 24538418 24538714 MLT1A0 366 + 83 340 165625 55 165 116 22 0 9 37 0 1 17 chain 33841 chr13 115169878 + 24541901 24542331 L1PA7 6471 - 7 461 77869 48 1 22 167 0 3 18 1 0 5 0 2 102 2 1 86 chain 9884 chr13 115169878 + 24543646 24543777 HSMAR1 1287 + 1153 1287 161159 66 0 2 39 6 7 20 chain 104621 chr13 115169878 + 24546062 24547240 SVA_D 2077 - 2 1746 35591 455 1 0 181 0 1 16 0 49 28 0 437 145 0 40 73 0 40 279 chain 39004 chr13 115169878 + 24583484 24584107 MER4B 649 - 18 649 70739 69 1 0 77 11 10 6 1 0 44 15 7 57 6 1 42 4 1 100 4 29 68 29 31 89 chain 27632 chr13 115169878 + 24593234 24593526 AluYa5 310 - 18 310 94259 292 chain 18740 chr13 115169878 + 24611288 24611490 L1PA5 6144 + 5930 6132 130855 202 chain 12985 chr13 115169878 + 24634182 24634471 L1PREC2 3366 + 2686 2947 148296 59 1 2 5 2 0 54 1 0 19 6 1 24 1 0 4 3 0 10 61 46 11 3 1 25 chain 30376 chr13 115169878 + 24656677 24656993 AluYb8 318 + 0 316 83720 316 chain 7766 chr13 115169878 + 24658887 24659002 AluJo 314 + 11 124 172499 27 12 10 76 chain 41451 chr13 115169878 + 24683105 24683618 L1PA6 6164 - 3 519 67346 7 2 0 92 0 3 82 0 1 292 0 1 38 chain 21369 chr13 115169878 + 24710339 24710608 AluSp 311 + 11 275 122619 41 10 5 218 chain 27331 chr13 115169878 + 24710976 24711268 AluYa5 310 - 19 310 95169 165 1 0 126 chain 16820 chr13 115169878 + 24757634 24757863 MER30 238 + 0 238 136063 103 7 19 77 7 4 35 chain 29726 chr13 115169878 + 24865878 24866193 AluYb8 318 - 3 318 85738 315 chain 8195 chr13 115169878 + 24883330 24883421 L1PA5 6144 + 6039 6130 169977 91 chain 54642 chr13 115169878 + 24910017 24910682 L1PA7 6471 + 5789 6457 55939 170 15 19 337 1 0 142 chain 487626 chr13 115169878 + 24916533 24922118 L1PA4 6152 + 1 6151 7453 95 0 525 186 3 0 143 0 4 85 1 3 20 0 2 376 0 11 448 0 3 280 0 2 77 7 14 111 0 4 841 1 0 54 0 1 654 0 1 406 0 4 284 1 0 445 1 0 218 0 4 597 0 1 91 1 0 4 0 1 155 chain 83825 chr13 115169878 + 24942816 24943779 LTR13A 966 - 0 966 41975 198 1 0 688 0 4 76 chain 34773 chr13 115169878 + 24947419 24947872 MER9a3 513 + 0 505 76514 18 4 29 63 0 1 56 0 15 74 1 0 39 0 10 106 0 1 24 0 1 68 chain 89123 chr13 115169878 + 24949525 24950531 LTR13 1007 + 0 1007 39953 241 0 2 62 1 0 702 chain 15206 chr13 115169878 + 24968376 24968572 THE1B 368 + 0 200 140762 35 0 5 129 1 0 31 chain 7389 chr13 115169878 + 24992880 24992973 L1PA16 3655 - 663 756 174839 93 chain 24552 chr13 115169878 + 24992974 24993270 LTR14B 630 - 323 620 107238 250 0 1 46 chain 14817 chr13 115169878 + 25020533 25020741 MER30 238 - 0 238 141891 44 3 0 67 4 19 73 0 18 17 chain 72614 chr13 115169878 + 25037652 25038514 L1PA10 4194 + 3303 4161 47206 813 3 0 34 1 0 11 chain 62082 chr13 115169878 + 25053566 25054315 LTR12C 1709 + 633 1701 51860 161 8 324 98 8 12 399 6 5 69 chain 28720 chr13 115169878 + 25057342 25057647 AluYb8 318 + 0 305 90246 305 chain 3060 chr13 115169878 + 25080692 25080729 LTR12C 1709 - 553 590 223820 37 chain 8634 chr13 115169878 + 25092895 25092997 L1PA6 6164 - 4 106 167567 102 chain 20300 chr13 115169878 + 25093031 25093280 LTR14B 630 - 30 279 126234 249 chain 27498 chr13 115169878 + 25102325 25102618 AluYa5 310 - 17 310 94659 293 chain 4988 chr13 115169878 + 25104305 25104364 L1PA16 3655 + 192 251 195276 59 chain 33378 chr13 115169878 + 25116954 25117410 L1PA7 6471 - 12 472 78604 59 1 0 23 8 0 8 1 9 17 0 12 19 2 0 200 2 0 9 4 1 103 chain 536767 chr13 115169878 + 25122568 25128695 L1PA4 6152 - 0 6145 3346 6 0 5 839 0 3 66 1 2 668 0 1 247 0 1 909 0 3 633 0 17 105 7 0 1713 1 3 393 20 12 519 chain 82294 chr13 115169878 + 25128695 25129697 LTR13 1007 - 0 1007 42627 38 2 0 6 5 7 140 0 1 78 0 1 51 0 2 297 4 5 381 chain 130639 chr13 115169878 + 25133860 25135408 LTR12C 1709 - 0 1709 27935 481 0 4 107 3 1 5 1 0 115 0 159 400 8 9 428 chain 72235 chr13 115169878 + 25165730 25166668 LTR5_Hs 974 + 0 974 47365 115 7 35 5 0 2 244 0 1 56 1 5 196 0 1 74 4 0 42 7 7 14 0 4 173 chain 42274 chr13 115169878 + 25196556 25197312 LTR12D 1347 - 0 912 66303 86 8 141 30 9 8 31 3 2 27 27 0 12 2 0 83 10 9 6 0 1 21 5 12 26 14 13 22 3 2 109 15 74 64 42 32 101 chain 30027 chr13 115169878 + 25202652 25203073 LTR7B 505 + 0 496 84725 108 0 10 49 1 2 6 0 38 12 3 27 26 1 3 81 1 0 79 12 13 42 chain 17558 chr13 115169878 + 25205919 25206131 MER41A 554 + 340 554 134105 43 0 1 43 0 1 126 chain 16078 chr13 115169878 + 25212769 25212969 MER4E1 777 - 7 209 138124 28 0 1 67 0 1 105 chain 72378 chr13 115169878 + 25220413 25221283 MER11D 897 + 0 897 47311 132 0 2 15 2 3 324 0 1 115 1 24 281 chain 29870 chr13 115169878 + 25270562 25270884 AluYb8 318 + 0 316 85212 118 6 0 198 chain 7946 chr13 115169878 + 25277695 25277803 HY1 111 - 0 111 171346 44 0 6 48 3 0 13 chain 73387 chr13 115169878 + 25305360 25306366 MER11A 1151 - 0 1120 46843 163 6 7 60 0 1 36 18 0 22 8 41 131 5 6 145 0 1 94 8 9 137 10 6 62 1 0 73 1 100 26 chain 22774 chr13 115169878 + 25345875 25346153 AluSp 311 + 14 288 116707 63 0 1 203 5 0 7 chain 57464 chr13 115169878 + 25380029 25380773 L1PA7 6471 - 1 804 54262 100 0 2 42 6 7 134 0 22 13 4 5 214 0 1 35 1 13 72 19 40 62 1 0 41 chain 546834 chr13 115169878 + 25380788 25386805 L1PA3long 6157 - 0 6157 1849 849 0 4 847 0 2 1032 0 4 126 0 1 2388 0 128 621 1 2 153 chain 374035 chr13 115169878 + 25409593 25414981 L1PB1 5432 + 84 5391 10962 109 1 0 4 1 3 196 7 5 5 0 2 101 0 9 73 3 13 156 0 6 56 21 46 84 87 0 60 0 1 10 1 5 145 1 0 128 4 0 94 1 0 7 2 0 5 3 0 90 0 1 188 0 1 227 0 4 13 0 2 108 1 7 11 1 17 118 0 4 74 0 1 44 1 0 8 0 2 77 0 1 33 4 13 44 2 0 73 11 1 15 1 3 132 1 0 10 0 1 112 0 4 39 0 3 111 0 1 103 6 9 40 7 6 41 1 7 12 0 3 61 10 11 130 2 1 304 1 4 114 18 4 15 49 0 214 0 2 95 0 1 452 4 9 135 4 1 47 9 13 269 9 2 9 23 0 33 20 15 5 2 0 53 2 1 16 1 0 29 43 45 16 24 19 24 1 0 21 chain 5178 chr13 115169878 + 25410410 25410473 L1PB1 5432 + 865 928 189966 63 chain 13407 chr13 115169878 + 25420738 25420921 MER30 238 - 3 203 146683 47 3 0 58 3 23 72 chain 7289 chr13 115169878 + 25449046 25449183 L1MB3 1562 - 179 322 175515 32 1 0 30 1 2 9 9 10 31 4 9 20 chain 36744 chr13 115169878 + 25461455 25461945 MER1A 529 + 41 528 73886 8 0 1 45 5 1 153 0 1 179 6 4 24 3 4 67 chain 4091 chr13 115169878 + 25461957 25462004 Tigger1 2417 - 2279 2326 206074 47 chain 22599 chr13 115169878 + 25474499 25474789 AluSp 311 + 9 291 117589 53 14 0 134 0 6 89 chain 3795 chr13 115169878 + 25492861 25492904 Tigger2a 444 + 148 191 210463 43 chain 15092 chr13 115169878 + 25499799 25499984 LTR22A 463 + 6 191 141053 185 chain 57658 chr13 115169878 + 25501351 25502102 HERVK22-int 3844 + 9 760 54156 33 3 0 159 2 1 105 1 0 13 10 15 95 0 1 4 1 0 325 chain 43020 chr13 115169878 + 25504611 25505219 L1PA16 3655 - 68 683 65398 9 3 0 26 1 0 56 1 0 85 0 1 120 2 0 89 5 4 129 8 19 63 1 4 10 chain 7720 chr13 115169878 + 25514305 25514438 Tigger3a 397 + 162 300 172797 17 0 4 58 25 26 33 chain 74772 chr13 115169878 + 25530683 25531624 LTR5_Hs 974 - 0 974 46124 191 7 7 116 0 1 197 0 4 308 7 35 115 chain 133712 chr13 115169878 + 25543830 25545367 SVA_D 2077 - 3 2069 27275 6 5 0 127 0 20 483 2 352 48 0 2 50 0 83 104 0 77 342 0 4 334 0 5 6 9 2 21 chain 276596 chr13 115169878 + 25581405 25584694 L1PA6 6164 - 2 3286 14838 7 2 0 130 16 23 413 0 1 168 29 7 98 1 0 361 0 1 587 0 4 299 1 2 810 7 11 6 0 1 43 0 1 311 chain 3316 chr13 115169878 + 25586115 25586151 MER5A 189 - 128 164 218656 36 chain 25175 chr13 115169878 + 25590592 25590892 AluYf4 310 + 0 308 103881 173 3 0 18 0 11 106 chain 5788 chr13 115169878 + 25594067 25594188 SVA_F 1814 - 522 785 187292 18 36 178 67 chain 20258 chr13 115169878 + 25594188 25594506 LTR7B 505 + 84 441 126351 21 0 10 56 43 79 5 1 0 17 7 0 6 0 2 85 1 0 76 chain 7456 chr13 115169878 + 25610952 25611042 MLT1A0 366 - 11 101 174418 90 chain 21691 chr13 115169878 + 25618665 25618921 AluY 311 + 38 295 121424 10 0 1 83 0 1 131 1 0 31 chain 23549 chr13 115169878 + 25626136 25626431 AluSc 308 + 10 299 112853 185 8 0 79 1 3 22 chain 227914 chr13 115169878 + 25626439 25629657 L1PB1 5432 + 2260 5424 17426 239 4 5 15 0 1 187 0 1 134 2 0 44 0 3 12 7 8 185 0 1 117 0 1 507 65 57 95 1 0 330 5 8 142 10 1 272 10 0 83 1 0 211 12 21 106 0 1 5 1 0 51 3 2 9 7 0 12 14 8 13 26 20 53 6 5 12 1 0 43 1 0 14 4 1 16 9 0 13 11 8 14 2 0 24 1 0 14 11 10 10 1 0 16 1 0 4 chain 23240 chr13 115169878 + 25635469 25635745 AluY 311 + 15 292 114492 117 0 1 159 chain 10758 chr13 115169878 + 25657419 25657551 MSTD 398 - 266 398 157164 132 chain 72358 chr13 115169878 + 25682555 25683662 L1MA3 4352 - 0 1081 47316 17 32 27 26 1 0 22 2 0 25 4 0 101 62 41 343 0 7 127 1 0 4 1 2 167 0 1 37 19 18 116 chain 38591 chr13 115169878 + 25690316 25690849 MER41C 542 + 15 542 71303 214 5 8 73 9 8 21 16 7 17 1 0 4 0 1 34 0 1 139 chain 24504 chr13 115169878 + 25714752 25715033 AluY 311 + 19 302 107521 113 0 1 127 0 1 41 chain 26972 chr13 115169878 + 25728754 25729166 MSTC 436 + 2 436 96366 64 3 19 12 4 14 10 8 9 103 23 15 54 0 3 131 chain 26922 chr13 115169878 + 25781751 25782175 LTR64 526 + 2 430 96543 5 2 0 12 4 6 18 0 8 37 6 3 105 2 0 20 1 6 118 1 0 6 17 14 70 chain 14321 chr13 115169878 + 25787407 25787608 MER30 238 + 30 238 143490 73 9 20 69 3 0 22 1 0 24 chain 2975 chr13 115169878 + 25818373 25818414 LTR12 884 - 547 630 225524 21 0 42 20 chain 22537 chr13 115169878 + 25834306 25834572 AluSp 311 - 12 278 117859 266 chain 9196 chr13 115169878 + 25865334 25865451 L1MC3 1789 - 581 698 164576 117 chain 28623 chr13 115169878 + 25867666 25868443 L1PA8 5853 - 0 444 90637 57 366 37 17 3 2 45 2 1 15 2 1 70 2 0 7 0 1 4 5 4 8 0 2 18 1 0 48 0 1 90 1 0 16 chain 13318 chr13 115169878 + 25917182 25917437 L1PB1 5432 - 12 246 147015 16 1 0 13 1 0 21 1 0 24 2 0 19 2 0 21 11 1 9 5 0 15 1 0 13 1 0 32 2 6 9 2 1 34 chain 6818 chr13 115169878 + 25917465 25917540 L1PA3long 6157 - 1 76 178820 75 chain 9460 chr13 115169878 + 25927615 25927738 MER41D 557 - 435 557 163275 37 1 0 85 chain 39607 chr13 115169878 + 25933803 25934266 LTR2 463 + 0 463 69881 463 chain 223127 chr13 115169878 + 25935584 25938126 L1PA5 6144 + 3585 6129 17702 54 3 0 897 0 3 1273 0 1 303 1 2 11 chain 39531 chr13 115169878 + 25962456 25962915 LTR2 463 - 0 463 69983 346 0 1 58 0 3 55 chain 3575 chr13 115169878 + 25967075 25967113 LTR24C 604 + 566 604 214065 38 chain 23296 chr13 115169878 + 25970280 25970675 MER39B 650 - 226 639 114228 62 71 72 29 1 0 4 0 1 25 0 4 117 3 4 46 0 12 37 chain 27818 chr13 115169878 + 25973535 25973839 AluYa5 310 - 10 310 93638 168 4 0 132 chain 12149 chr13 115169878 + 25982055 25982216 L1PA8 5853 + 5694 5853 151619 46 2 1 19 1 0 93 chain 27452 chr13 115169878 + 26001286 26001681 MER1A 529 + 94 520 94809 40 2 1 48 0 30 192 0 1 37 31 32 45 chain 14952 chr13 115169878 + 26011213 26011402 L1PA16 3655 - 564 752 141470 174 1 0 14 chain 4393 chr13 115169878 + 26022347 26022402 L1MA4 2864 - 62 115 202027 35 2 0 18 chain 26127 chr13 115169878 + 26041694 26041988 AluYf5 307 - 12 307 99497 21 0 1 273 chain 154261 chr13 115169878 + 26053630 26055340 SVA_D 2077 - 1 2072 24069 315 1 0 322 0 1 31 1 50 129 0 312 911 chain 22875 chr13 115169878 + 26056729 26057106 THE1B 368 + 0 368 116212 17 2 0 94 0 3 6 8 6 43 31 24 11 3 0 6 0 3 74 7 6 75 chain 29608 chr13 115169878 + 26078596 26078905 AluYb8 318 + 0 309 86181 309 chain 6949 chr13 115169878 + 26080892 26081037 Tigger4b 360 - 168 336 177826 53 30 61 37 7 0 12 1 0 5 chain 170639 chr13 115169878 + 26086028 26088130 SVA_D 2077 - 4 2061 21973 371 0 5 296 4 0 13 73 0 68 1 79 22 50 0 181 0 2 43 1 0 8 0 38 30 2 1 99 40 0 333 0 1 467 chain 5296 chr13 115169878 + 26086712 26086785 SVA_D 2077 - 791 865 76980 66 0 1 7 chain 3627 chr13 115169878 + 26086876 26086926 SVA_D 2077 - 1034 1085 76980 7 1 2 42 chain 2492 chr13 115169878 + 26087290 26087330 SVA_D 2077 - 1493 1533 151863 40 chain 76455 chr13 115169878 + 26095938 26096977 L1MA4 2864 - 1329 2432 45234 151 5 8 18 13 12 102 0 3 63 1 0 105 1 0 74 3 65 305 1 0 197 chain 23435 chr13 115169878 + 26102800 26103254 L1PA5 6144 - 0 288 113446 77 166 0 211 chain 33037 chr13 115169878 + 26121447 26121877 MER1A 529 + 93 528 79160 71 0 1 291 11 15 57 chain 61956 chr13 115169878 + 26129878 26130780 L1PA16 3655 - 36 928 51917 16 1 0 7 8 0 4 2 0 14 3 0 58 1 0 109 8 12 98 45 48 50 1 0 244 0 1 12 0 1 23 2 0 24 1 0 171 chain 69586 chr13 115169878 + 26138862 26139977 L1PB1 5432 - 12 1048 48578 16 1 0 13 1 0 19 11 0 26 2 0 14 8 5 16 9 0 15 3 0 14 2 1 44 1 0 16 2 1 53 2 0 9 26 20 22 42 0 11 2 3 49 15 16 34 1 20 168 3 4 190 3 0 177 15 0 60 chain 14190 chr13 115169878 + 26168592 26168866 L1PB1 5432 - 17 274 143921 11 1 0 13 1 0 17 5 4 24 2 0 15 42 35 16 1 0 44 1 0 15 2 1 53 2 0 9 chain 21824 chr13 115169878 + 26168872 26169225 L1PB1 5432 + 4866 5155 120926 237 73 11 24 1 0 9 1 0 8 chain 172312 chr13 115169878 + 26185185 26189283 L1PBa 3878 - 101 3797 21781 7 1 0 9 19 13 11 2 0 21 2 1 140 17 14 25 6 10 304 3 0 62 1 9 42 1 4 70 2 1 326 0 3 624 1 2 231 4 17 213 0 4 109 1664 1294 41 71 24 47 1 0 9 2 0 5 1 0 4 chain 497526 chr13 115169878 + 26211298 26217356 L1PA3long 6157 + 36 6153 6978 371 24 25 142 0 1 122 0 7 119 33 36 6 3 0 646 0 1 501 0 4 2416 0 2 313 0 3 423 0 1 135 0 4 75 0 1 47 0 3 135 15 45 424 0 1 108 chain 80385 chr13 115169878 + 26245143 26246199 MER11C 1089 + 0 1073 43438 246 0 9 35 23 27 69 1 0 304 1 5 4 1 0 36 9 10 120 0 1 54 1 0 144 0 1 8 chain 22849 chr13 115169878 + 26355132 26355416 AluY 311 + 15 292 116347 108 3 1 8 0 1 95 6 0 64 chain 26475 chr13 115169878 + 26363508 26364098 L1PA13 3608 + 3000 3435 98149 132 1 0 4 12 20 4 1 0 109 1 5 49 13 12 28 0 2 16 0 1 11 8 1 31 160 0 10 chain 28781 chr13 115169878 + 26375854 26376233 THE1C 375 - 0 375 89975 26 1 0 168 4 1 180 chain 6457 chr13 115169878 + 26412911 26412986 L1P1 4361 + 2 77 181575 75 chain 32032 chr13 115169878 + 26452471 26452878 MER41A 554 - 0 554 80813 31 0 1 117 0 146 59 0 1 124 1 0 75 chain 546779 chr13 115169878 + 26467188 26473315 L1PA4 6152 - 0 6151 1856 21 1 0 874 0 18 471 1 0 262 0 1 566 0 1 86 2 3 758 0 1 1139 0 1 256 1 0 103 1 0 506 1 9 52 0 1 543 4 0 479 chain 386989 chr13 115169878 + 26527696 26532449 L1PA7 6471 + 3 6469 10548 409 2 0 601 9 6 139 0 14 435 0 1741 39 12 0 116 7 6 500 0 1 122 0 1 178 0 5 568 0 1 70 1 0 348 1 0 84 0 1 73 0 1 22 0 5 125 1 4 93 3 0 483 17 0 163 24 8 58 3 1 35 2 0 10 chain 53646 chr13 115169878 + 26566826 26567405 L1PA2 6032 - 1 580 56588 579 chain 25814 chr13 115169878 + 26576382 26576708 L1PA6 6164 + 5833 6162 100814 138 4 5 175 0 2 9 chain 30073 chr13 115169878 + 26605845 26606245 LTR12F 595 - 36 585 84591 194 9 10 72 0 154 25 6 1 24 1 0 69 chain 245718 chr13 115169878 + 26677120 26680520 L1P3 4156 + 31 3158 16471 217 15 14 60 1 0 16 4 6 63 15 0 183 5 11 45 6 9 157 0 1 34 0 1 37 297 2 56 0 15 62 17 19 88 7 16 161 1 3 531 2 1 210 0 4 331 0 1 131 0 2 120 9 1 519 chain 27567 chr13 115169878 + 26677986 26678275 AluYd8 298 + 1 290 94445 289 chain 83703 chr13 115169878 + 26683703 26684659 L1PA5 6144 + 5188 6144 42036 106 1 0 227 0 2 288 1 0 333 chain 20667 chr13 115169878 + 26692744 26692987 AluYc 301 + 44 289 125080 70 0 2 173 chain 27297 chr13 115169878 + 26722102 26722469 THE1D 372 - 0 368 95284 179 26 26 4 0 1 158 chain 94832 chr13 115169878 + 26738948 26740132 THE1B-int 1605 + 397 1605 38136 4 1 0 31 3 28 1145 chain 27314 chr13 115169878 + 26740476 26740808 L1PREC2 3366 + 2206 2538 95229 332 chain 33271 chr13 115169878 + 26768738 26769180 MLT2A1 477 - 0 477 78768 52 0 42 45 8 5 157 8 5 157 1 0 14 chain 3376 chr13 115169878 + 26791779 26791923 MER3 215 + 36 88 217544 40 92 0 12 chain 4973 chr13 115169878 + 26804066 26804144 MADE1 96 - 8 96 195435 12 0 19 8 9 0 49 chain 22878 chr13 115169878 + 26850010 26850282 AluSc 308 - 19 293 116192 15 0 2 257 chain 6967 chr13 115169878 + 26873498 26873583 Tigger3c 601 - 81 170 177701 10 0 4 75 chain 55178 chr13 115169878 + 26886154 26886861 LTR12_ 688 + 0 688 55601 24 1 0 70 1 0 51 42 25 518 chain 4311 chr13 115169878 + 26907204 26907270 Tigger4 2445 + 2139 2205 203083 32 3 1 13 0 2 18 chain 7433 chr13 115169878 + 26918526 26918613 Tigger3b 1229 - 708 795 174558 87 chain 21246 chr13 115169878 + 26937191 26937482 AluY 311 + 15 300 123033 108 0 3 7 31 22 145 chain 3976 chr13 115169878 + 26942602 26942648 MER104 178 - 38 84 207752 46 chain 3140 chr13 115169878 + 26986602 26986708 LTR16E2 555 + 259 364 222191 15 58 57 33 chain 11137 chr13 115169878 + 27004793 27004982 L1P4 1494 + 105 274 155677 19 2 1 20 32 13 116 chain 21682 chr13 115169878 + 27035421 27035704 AluY 311 + 27 310 121458 26 7 8 71 0 1 74 3 1 102 chain 20648 chr13 115169878 + 27035705 27036008 THE1B 368 - 58 368 125138 112 2 0 24 3 2 105 15 27 25 2 0 15 chain 7163 chr13 115169878 + 27040634 27040807 MLT2B1 522 - 66 289 176320 33 4 23 34 21 23 34 28 58 5 1 0 13 chain 12382 chr13 115169878 + 27049411 27049783 MER74A 558 - 0 427 150704 76 51 89 8 1 0 5 0 2 10 21 21 47 37 39 42 1 0 4 53 68 16 chain 43489 chr13 115169878 + 27066257 27066802 MLT2A2 560 - 0 560 64829 6 0 4 137 0 11 222 1 0 105 0 1 74 chain 6610 chr13 115169878 + 27081511 27081689 LTR39 781 - 522 696 180372 80 83 79 15 chain 13844 chr13 115169878 + 27083657 27083823 LTR5B 1012 + 845 1012 145085 128 0 1 38 chain 21381 chr13 115169878 + 27123158 27123411 AluSc5 308 - 50 303 122582 253 chain 16503 chr13 115169878 + 27154031 27154272 MER30 238 + 0 238 136908 107 23 26 20 6 0 85 chain 83103 chr13 115169878 + 27171629 27172593 L1PA4 6152 - 9 996 42287 104 6 17 14 13 19 687 0 4 93 0 2 47 chain 10966 chr13 115169878 + 27201906 27202036 L1PA2 6032 + 5902 6027 156334 119 5 0 6 chain 529493 chr13 115169878 + 27204310 27210786 L1PA6 6164 - 11 6164 4244 830 0 5 25 1 2 174 24 7 930 0 1 989 0 1 39 318 0 180 1 2 378 0 3 252 0 2 880 0 1 633 17 0 8 1 18 555 0 2 198 5 0 38 chain 53240 chr13 115169878 + 27243984 27244640 L1PA7 6471 + 5801 6468 56864 416 0 4 14 1 0 24 0 6 33 0 1 17 9 8 75 0 2 67 chain 2947 chr13 115169878 + 27248432 27248463 U2 167 - 136 167 226140 31 chain 152435 chr13 115169878 + 27297269 27298964 SVA_D 2077 + 13 2073 24290 12 5 0 147 0 12 694 0 310 152 1 2 10 0 49 44 1 0 321 1 0 307 chain 20535 chr13 115169878 + 27313517 27313857 THE1B 368 + 0 368 125531 13 2 0 12 10 30 114 1 0 28 36 46 26 2 3 96 chain 5292 chr13 115169878 + 27350205 27350269 Tigger3a 397 + 135 202 192102 42 0 3 22 chain 31395 chr13 115169878 + 27350761 27351145 L1PA7 6471 - 4 388 81822 90 8 0 8 0 8 278 chain 17440 chr13 115169878 + 27365827 27366175 THE1B 368 + 0 368 134403 81 52 54 34 10 9 19 20 0 9 0 40 60 7 6 56 chain 61527 chr13 115169878 + 27379809 27380542 SVA_D 2077 - 0 1181 52104 413 0 2 120 0 352 89 5 9 7 0 51 31 0 1 14 0 2 33 0 37 13 1 0 7 chain 18838 chr13 115169878 + 27399771 27400071 THE1B 368 - 65 368 130552 60 2 1 12 14 17 10 1 2 32 1 0 58 6 8 20 2 1 82 chain 29988 chr13 115169878 + 27406394 27406712 AluYb8 318 - 0 318 84841 318 chain 59748 chr13 115169878 + 27424449 27425198 MER4E 760 + 0 752 52963 24 2 0 127 11 14 54 0 1 112 7 6 31 0 2 381 chain 40689 chr13 115169878 + 27425501 27425962 L1PA5 6144 - 10 469 68311 49 1 0 83 1 0 327 chain 21769 chr13 115169878 + 27435050 27435403 THE1A 353 - 0 353 121140 139 13 12 5 0 3 60 50 49 37 0 1 34 2 0 13 chain 24675 chr13 115169878 + 27459995 27460326 THE1B 368 - 22 366 106587 51 2 1 122 8 7 106 0 15 42 chain 23342 chr13 115169878 + 27477435 27478253 THE1B 368 + 0 368 113970 44 0 15 77 513 48 184 chain 23797 chr13 115169878 + 27495417 27495769 L1PA8 5853 - 0 347 111493 60 7 6 27 7 6 11 1 0 48 9 7 8 1 0 72 2 0 44 1 0 42 0 4 12 chain 37110 chr13 115169878 + 27512563 27513075 L1PA8 5853 - 0 505 73365 93 4 3 16 2 1 52 5 4 5 1 0 69 2 0 48 1 0 214 chain 16171 chr13 115169878 + 27521892 27522216 L1MB3 1562 + 1236 1559 137837 99 1 2 14 1 0 70 42 23 36 37 55 24 chain 6348 chr13 115169878 + 27549353 27549462 L1PB1 5432 - 155 262 182392 36 11 10 10 2 1 50 chain 16489 chr13 115169878 + 27625314 27625660 L1PB1 5432 - 8 326 136960 4 1 0 16 1 0 8 1 4 22 1 0 24 2 0 14 8 5 18 14 6 7 3 0 16 1 0 43 6 5 11 5 4 50 2 0 9 16 11 13 1 0 20 1 0 8 chain 9669 chr13 115169878 + 27625676 27625894 L1PB1 5432 + 5167 5366 162246 50 9 8 12 2 1 43 40 28 18 8 5 14 2 0 20 chain 8854 chr13 115169878 + 27652397 27652553 MER2 342 + 136 315 166354 47 2 24 69 23 24 15 chain 25842 chr13 115169878 + 27662275 27662576 AluY 311 + 0 305 100687 88 1 5 39 0 1 77 1 0 95 chain 73104 chr13 115169878 + 27681873 27682669 L1PA3long 6157 + 5350 6146 46977 796 chain 24605 chr13 115169878 + 27695719 27696008 AluY 311 + 3 293 106965 129 0 1 160 chain 66298 chr13 115169878 + 27699625 27700562 L1P2 5180 + 2 939 49951 149 1 0 43 2 1 49 16 15 70 3 4 115 28 13 54 1 0 48 1 0 38 0 1 32 1 0 45 9 8 62 0 1 37 0 15 98 0 4 35 chain 18206 chr13 115169878 + 27741200 27741414 AluSp 311 + 84 297 132319 48 1 0 165 chain 24417 chr13 115169878 + 27766592 27766941 THE1B 368 + 0 368 107987 44 6 21 104 1 0 24 2 0 5 0 2 9 3 10 72 3 0 27 1 2 48 chain 13255 chr13 115169878 + 27786505 27786990 LTR12D 1347 + 587 1083 147265 22 27 25 14 0 2 42 81 19 65 173 247 25 1 0 35 chain 412124 chr13 115169878 + 27787328 27792254 HERV9-int 5642 + 0 4824 9743 335 0 1 264 2 3 192 10 9 303 109 0 128 9 10 138 0 1 654 1 0 102 0 1 931 0 1 357 0 1 724 0 1 100 7 8 560 chain 2051 chr13 115169878 + 27788453 27788514 HERV9-int 5642 + 1046 1107 170659 61 chain 88404 chr13 115169878 + 27793725 27794954 LTR12D 1347 + 0 1347 40219 203 22 23 39 19 19 13 8 44 120 41 0 74 4 35 20 1 0 104 2 19 309 2 76 18 6 7 224 chain 86983 chr13 115169878 + 27795046 27797155 L1PA15 4387 + 2940 4355 40792 122 9 17 89 4 0 174 0 2 34 7 8 20 23 25 246 6 0 10 342 1 59 4 3 63 7 5 12 4 0 60 2 0 42 1 0 66 331 0 102 122 117 39 17 14 44 3 1 14 5 0 26 chain 35993 chr13 115169878 + 27805210 27805734 LTR8 732 - 124 724 74903 96 5 9 61 0 3 5 39 48 49 0 58 164 0 4 21 2 0 82 chain 32492 chr13 115169878 + 27851439 27851884 MLT2A1 477 - 0 477 80044 36 23 56 20 2 0 6 0 2 152 0 1 24 0 1 8 9 6 165 chain 5390 chr13 115169878 + 27917823 27917881 U6 107 - 43 101 191082 58 chain 29870 chr13 115169878 + 27924886 27925379 LTR12 884 - 97 884 85209 25 1 137 46 1 0 15 30 33 40 1 0 4 0 1 5 27 28 53 0 22 40 0 1 116 0 132 26 0 1 37 1 0 25 chain 2839 chr13 115169878 + 27950901 27950937 L1MB3 1562 - 137 172 228082 4 1 0 31 chain 21057 chr13 115169878 + 27966392 27966672 AluSc 308 + 5 285 123702 131 15 15 134 chain 3467 chr13 115169878 + 27968782 27968831 Charlie1a 1436 - 236 285 215864 13 1 0 4 0 1 31 chain 3341 chr13 115169878 + 27974657 27974701 LTR12F 595 + 239 282 218214 27 1 0 16 chain 5930 chr13 115169878 + 28005433 28005507 L1PB2 3958 + 3712 3785 185885 63 1 0 10 chain 24356 chr13 115169878 + 28042905 28043249 LOR1b 457 - 16 385 108342 93 9 6 111 6 35 120 1 0 4 chain 6498 chr13 115169878 + 28044535 28044754 L1MC1 2226 + 1996 2191 181259 51 23 16 13 92 76 32 1 0 7 chain 9114 chr13 115169878 + 28062405 28062520 L1MA5A 2387 + 2043 2157 164998 64 1 0 50 chain 41078 chr13 115169878 + 28087694 28088159 L1PA5 6144 + 5673 6138 67799 465 chain 7900 chr13 115169878 + 28151583 28151697 MER30 238 - 0 111 171654 36 6 3 72 chain 23395 chr13 115169878 + 28156764 28157037 L1PA7 6471 + 6196 6468 113674 212 1 0 60 chain 10853 chr13 115169878 + 28246333 28246462 MLT1B 390 + 245 374 156768 129 chain 16041 chr13 115169878 + 28247046 28247379 L1PB1 5432 + 5114 5415 138244 23 1 0 10 1 0 9 6 2 9 2 0 53 2 1 15 1 0 45 1 0 11 29 16 19 16 13 6 2 0 24 1 0 21 1 0 13 1 0 11 chain 20945 chr13 115169878 + 28275582 28275860 AluY 311 + 10 292 124132 120 17 21 141 chain 3080 chr13 115169878 + 28285372 28285406 L1MA6 2487 + 2235 2269 223320 34 chain 92111 chr13 115169878 + 28305885 28306973 L1PA6 6164 - 2 1101 38934 9 1 0 138 7 15 168 0 1 77 0 4 193 0 3 14 6 3 470 1 0 4 chain 10779 chr13 115169878 + 28313083 28313281 L1MA5A 2387 + 2143 2303 157079 14 2 0 58 7 0 17 28 0 63 1 0 8 chain 21213 chr13 115169878 + 28318046 28318447 MSTA 426 + 7 404 123162 101 47 39 6 0 6 42 27 28 7 2 0 10 11 11 44 9 8 95 chain 138945 chr13 115169878 + 28321305 28323016 LTR12C 1709 - 0 1709 26320 104 1 0 39 0 1 104 25 24 209 0 4 106 4 2 4 1 0 88 0 41 146 1 0 134 41 0 124 6 5 574 chain 3592 chr13 115169878 + 28322271 28322312 LTR12C 1709 - 847 887 84346 25 1 0 15 chain 44881 chr13 115169878 + 28328665 28329198 LTR10A 586 + 12 574 63195 167 0 29 366 chain 9187 chr13 115169878 + 28402899 28403006 U6 107 + 0 107 164618 107 chain 12230 chr13 115169878 + 28408973 28409144 MER2 342 - 129 307 151298 103 0 1 22 14 20 32 chain 23566 chr13 115169878 + 28418813 28419100 AluY 311 + 26 311 112767 106 1 2 42 3 0 135 chain 81239 chr13 115169878 + 28423332 28424410 L1PB2 3958 + 2769 3838 43067 155 2 0 383 2 0 56 1 0 11 4 0 65 2 0 12 2 0 89 6 5 62 15 14 60 1 0 94 1 0 36 0 8 19 chain 24316 chr13 115169878 + 28444777 28445069 AluSp 311 + 0 296 108569 91 0 4 201 chain 30254 chr13 115169878 + 28448738 28449076 L1PA4 6152 - 1 339 84043 338 chain 16234 chr13 115169878 + 28460120 28460463 THE1D 372 - 0 365 137664 87 9 10 26 66 71 6 0 6 51 15 15 20 9 19 54 chain 24779 chr13 115169878 + 28478405 28478795 MLT2A2 560 - 58 560 106008 41 0 5 43 3 112 69 65 63 169 chain 42778 chr13 115169878 + 28484036 28484586 MER41A 554 - 0 554 65682 27 0 1 144 0 2 31 0 1 145 1 0 5 0 1 197 chain 95408 chr13 115169878 + 28510758 28511877 L1PA6 6164 + 5042 6161 37982 50 1 2 916 1 0 151 chain 4598 chr13 115169878 + 28514357 28514525 MER30 238 + 175 238 199652 15 105 0 48 chain 23519 chr13 115169878 + 28520894 28521177 AluSg7 307 - 23 307 113022 157 0 1 126 chain 3244 chr13 115169878 + 28565674 28565710 MIR 256 + 115 151 220116 36 chain 22926 chr13 115169878 + 28573413 28573688 AluSp 311 - 23 297 115984 128 1 0 146 chain 3664 chr13 115169878 + 28581825 28581898 MIR 256 + 81 156 212495 35 18 20 20 chain 11275 chr13 115169878 + 28621032 28621180 MER33 330 - 167 314 155143 34 1 0 113 chain 3179 chr13 115169878 + 28628465 28628501 MER57E1 380 + 0 36 221377 36 chain 20268 chr13 115169878 + 28641193 28641459 AluSp 311 - 44 311 126321 8 0 1 18 10 11 109 1 0 120 chain 11278 chr13 115169878 + 28643740 28643968 MER2 342 + 17 221 155136 49 13 14 35 9 5 43 29 10 34 2 0 14 chain 26823 chr13 115169878 + 28651381 28651761 THE1A 353 - 0 353 96903 155 1 0 47 26 1 38 7 6 106 chain 128047 chr13 115169878 + 28651766 28653651 THE1A-int 1579 - 5 1579 28557 4 0 1 450 0 2 413 0 1 181 5 6 18 311 0 238 3 0 40 2 0 220 chain 27878 chr13 115169878 + 28653651 28654005 THE1A 353 - 0 353 93425 93 0 1 61 1 0 88 2 1 109 chain 7400 chr13 115169878 + 28696664 28696762 L1MB2 1706 + 1598 1694 174768 13 1 0 10 1 0 73 chain 20774 chr13 115169878 + 28733587 28733859 AluSp 311 - 15 286 124702 58 4 3 55 1 0 4 2 3 148 chain 6039 chr13 115169878 + 28741606 28741691 MLT1A1-int 1737 - 1148 1230 184902 15 3 0 67 chain 17326 chr13 115169878 + 28764727 28765012 THE1D 372 - 0 372 134722 97 1 2 27 6 83 72 36 45 46 chain 5764 chr13 115169878 + 28776970 28777045 MADE1 96 + 0 93 187496 30 0 1 15 0 17 30 chain 29322 chr13 115169878 + 28839856 28840171 AluYb8 318 - 5 318 87430 187 2 0 126 chain 16694 chr13 115169878 + 28894576 28894798 MER30 238 + 6 238 136421 97 7 20 67 3 0 48 chain 13506 chr13 115169878 + 28944455 28944605 L1PA4 6152 + 5993 6143 146340 150 chain 32700 chr13 115169878 + 28965409 28965841 MER4A1 472 + 8 458 79688 218 1 22 97 10 7 106 chain 13809 chr13 115169878 + 29059061 29059217 L1PA4 6152 + 5984 6140 145226 156 chain 4924 chr13 115169878 + 29081881 29081945 MLT1B 390 + 14 77 195996 12 1 0 51 chain 35991 chr13 115169878 + 29090378 29091316 L1PB1 5432 + 4824 5422 74910 102 0 1 171 6 7 10 3 0 23 1 0 5 2 1 14 16 10 52 2 1 10 6 5 45 350 27 24 6 5 9 2 0 24 1 0 22 1 0 12 1 0 18 chain 7103 chr13 115169878 + 29117322 29117420 MER20 218 + 89 184 176736 68 2 0 6 1 0 21 chain 24509 chr13 115169878 + 29118570 29118914 THE1B 368 - 0 368 107499 76 6 7 62 0 7 23 0 2 19 8 7 106 0 15 44 chain 44162 chr13 115169878 + 29179153 29179690 L1PA4 6152 - 0 542 63996 6 0 5 133 0 13 7 22 9 369 chain 18165 chr13 115169878 + 29190775 29191076 L1PA15 4387 - 202 510 132422 55 1 0 11 0 1 14 1 0 53 5 7 13 12 22 6 1 0 71 1 0 38 7 5 12 chain 3958 chr13 115169878 + 29250447 29250495 MSTB 430 - 383 430 208005 6 1 0 41 chain 3940 chr13 115169878 + 29253093 29253175 MER20 218 + 39 122 208266 27 24 25 31 chain 488022 chr13 115169878 + 29262214 29268472 L1PA7 6471 - 4 6464 7443 8 2 0 5 3 0 70 33 11 55 1 0 459 0 3 119 0 1 115 1 0 204 0 1 747 0 4 241 0 5 217 4 5 548 1 0 117 5 3 43 3 2 588 3 7 98 1 16 134 0 1 80 0 1 38 0 2 248 3 2 139 0 3 353 1 5 169 14 22 339 3 4 21 0 4 307 14 14 153 0 1 4 1 10 113 1 0 85 35 205 73 18 18 16 15 14 190 chain 27879 chr13 115169878 + 29272389 29272817 LTR12F 595 + 0 595 93422 89 49 150 47 0 64 42 2 0 125 3 7 71 chain 74184 chr13 115169878 + 29280873 29281702 L1PA5 6144 + 5320 6141 46417 674 7 0 37 1 0 110 chain 5005 chr13 115169878 + 29289716 29289772 L1MA5A 2387 + 2236 2292 195087 56 chain 12704 chr13 115169878 + 29297505 29297641 L1PA2 6032 - 1 137 149437 136 chain 45935 chr13 115169878 + 29320047 29320598 MER41A 554 - 0 554 62097 92 0 1 405 0 2 54 chain 438205 chr13 115169878 + 29344569 29350855 L1PA8 5853 - 0 5803 9100 93 1 0 16 5 4 47 1 0 14 2 1 70 2 0 44 1 0 183 0 2 305 19 12 51 0 2 208 1 0 467 6 4 205 0 145 362 0 1 29 1 2 371 16 0 116 0 4 120 4 5 9 0 1 5 1 0 84 1 10 368 1 3 299 0 13 92 0 1 59 310 0 378 3 1 5 0 2 77 0 1 21 307 0 17 9 0 280 0 12 141 16 17 33 2 10 43 8 6 315 1 0 4 3 5 91 0 11 202 3 4 41 0 4 192 71 31 11 2 0 21 chain 188952 chr13 115169878 + 29353727 29356478 L1PB1 5432 - 10 2730 20151 18 1 0 7 2 0 5 0 1 21 1 0 18 68 52 4 1 0 12 7 6 42 1 0 15 2 1 51 2 0 10 6 2 13 1 0 10 10 9 12 17 15 118 0 1 96 1 0 70 0 9 121 0 6 7 7 0 33 1 0 9 3 0 108 0 1 32 0 1 114 0 5 345 0 1 272 5 0 19 14 6 108 10 0 333 0 16 120 1 2 137 9 8 5 0 1 88 0 1 7 0 1 61 1 0 7 8 3 124 chain 174743 chr13 115169878 + 29358779 29361340 L1P2 5180 - 1114 3344 21503 16 0 1 105 0 1 419 14 2 732 6 10 208 0 2 189 9 0 20 1 3 26 312 0 9 4 0 115 4 6 30 1 0 153 25 20 163 chain 29658 chr13 115169878 + 29364071 29364480 MER41-int 2638 - 1836 2238 86036 94 4 5 23 1 0 221 1 0 10 6 0 49 chain 29587 chr13 115169878 + 29379976 29380290 AluYb8 318 + 0 314 86248 314 chain 22844 chr13 115169878 + 29386746 29387026 AluSp 311 + 11 295 116372 13 1 0 60 0 4 27 0 2 136 1 0 42 chain 86013 chr13 115169878 + 29401763 29402786 MER11B 1079 - 37 1079 41151 269 5 7 432 1 18 316 chain 5631 chr13 115169878 + 29468607 29468679 MLT1B 390 + 280 354 188757 32 0 2 40 chain 161261 chr13 115169878 + 29470352 29472186 L1PA4 6152 + 4303 6140 23157 1001 1 5 237 0 1 137 6 2 262 0 2 190 chain 316556 chr13 115169878 + 29477402 29480927 L1PA4 6152 - 1 3538 12740 458 0 2 312 1 3 251 0 7 1179 0 1 1324 chain 121182 chr13 115169878 + 29480927 29484001 L1PA4 6152 + 1524 4324 30642 1071 1630 1355 90 2 3 281 chain 52167 chr13 115169878 + 29482288 29482875 L1PA4 6152 - 9 596 57517 587 chain 67480 chr13 115169878 + 29482882 29483628 L1PA4 6152 - 1055 1802 49460 8 0 1 738 chain 193543 chr13 115169878 + 29486581 29489255 L1PA10 4194 - 33 2628 19730 11 1 0 34 3 0 40 2 0 205 5 0 19 1 0 95 92 0 5 1 0 635 8 6 155 1 0 177 0 4 72 0 5 15 3 7 64 8 2 61 1 16 52 0 1 250 0 4 73 0 5 132 0 4 191 34 24 59 0 1 88 0 2 81 chain 20947 chr13 115169878 + 29505826 29506066 L1PA4 6152 - 9 250 124120 138 4 5 98 chain 3339 chr13 115169878 + 29511338 29511447 LTR12F 595 + 139 248 218251 28 24 48 20 25 1 12 chain 22720 chr13 115169878 + 29524708 29525087 Tigger1 2417 - 2009 2390 116986 39 35 36 21 5 8 47 1 0 9 4 5 120 8 6 90 chain 11399 chr13 115169878 + 29530072 29530345 L1PB1 5432 - 15 265 154702 4 1 0 9 1 0 8 8 7 19 1 0 18 67 52 4 1 0 16 4 3 40 1 0 16 2 1 53 chain 48600 chr13 115169878 + 29564492 29565169 LTR12 884 + 0 751 60037 24 1 0 15 4 5 53 20 61 7 0 4 150 0 25 32 3 1 134 0 5 161 4 5 69 chain 22536 chr13 115169878 + 29567565 29567919 L1P4 1494 - 144 570 117865 62 8 75 38 0 1 140 42 46 64 chain 5978 chr13 115169878 + 29567923 29568022 L1M4c 1769 - 151 244 185439 31 1 0 24 1 0 6 3 0 28 1 0 4 chain 483357 chr13 115169878 + 29568042 29573569 L1PA4 6152 - 1 5546 7615 4 0 1 146 5 6 428 0 1 535 0 1 265 0 1 411 0 4 378 1 0 793 1 0 67 0 4 51 0 1 346 0 5 382 0 1 4 1 0 981 34 0 8 0 34 174 2 3 510 chain 22773 chr13 115169878 + 29586749 29587021 AluY 311 + 21 293 116711 88 2 1 16 0 1 166 chain 160880 chr13 115169878 + 29610558 29613008 L1P2 5180 - 2437 4749 23214 151 0 2 259 6 4 308 9 8 682 10 11 269 1 0 4 4 5 7 0 1 4 1 0 55 43 14 21 12 16 120 0 15 47 22 1 143 14 14 17 159 71 48 19 0 15 chain 252359 chr13 115169878 + 29614147 29617880 L1PB1 5432 - 28 3754 16109 12 1 0 22 1 0 20 6 4 14 9 6 18 16 6 6 1 0 16 1 0 44 5 4 11 2 1 51 2 0 10 6 2 13 1 0 10 41 38 63 0 3 7 10 9 14 1 5 38 0 1 70 2 1 96 0 1 105 0 6 45 4 0 10 0 1 334 18 28 299 0 4 207 44 24 707 1 0 11 0 1 170 1 0 10 1 0 46 20 21 58 1 3 9 2 0 159 6 7 24 2 0 6 11 12 39 0 1 96 5 33 38 0 3 254 0 5 156 41 32 38 10 4 78 1 0 26 chain 39749 chr13 115169878 + 29620788 29621270 LTR10D 510 + 0 497 69688 75 6 12 115 0 8 21 1 0 38 0 2 226 chain 20015 chr13 115169878 + 29632749 29632979 L1PA4 6152 - 18 278 127098 24 0 30 206 chain 19225 chr13 115169878 + 29654522 29654856 MLT2A2 560 - 17 472 129452 127 0 115 6 6 0 50 65 77 80 chain 6036 chr13 115169878 + 29655702 29655782 MADE1 96 - 0 96 184929 37 1 17 42 chain 12470 chr13 115169878 + 29700688 29700879 MER30 238 + 31 238 150374 76 4 0 11 3 16 18 0 6 60 5 6 14 chain 29297 chr13 115169878 + 29722604 29722914 AluYa5 310 - 0 310 87587 310 chain 82706 chr13 115169878 + 29723337 29724446 L1PA11 4918 - 415 1529 42455 13 0 5 11 2 0 67 2 0 13 2 1 64 5 1 114 0 5 52 15 0 8 9 24 153 0 6 198 2 0 379 chain 171059 chr13 115169878 + 29767517 29769390 L1PA3long 6157 + 4278 6157 21935 79 0 4 1623 0 2 171 chain 453498 chr13 115169878 + 29771202 29777483 L1PA8 5853 - 0 5803 8634 93 1 0 15 12 11 46 2 0 9 2 1 70 2 0 44 1 0 33 9 11 156 0 7 81 0 2 255 0 1 5 0 6 89 18 0 32 0 1 147 1 0 308 5 6 234 0 2 274 0 4 72 131 5 514 5 3 194 1 0 35 1 0 4 1 2 20 0 5 174 3 1 343 318 0 511 2 1 84 0 3 146 5 9 1071 0 1 72 0 1 253 1 0 25 0 1 49 12 16 23 4 1 158 64 25 6 1 0 11 2 0 21 chain 9546 chr13 115169878 + 29773226 29773349 L1PA8 5853 + 4341 4464 162471 6 1 0 28 1 2 87 chain 199301 chr13 115169878 + 29788322 29790951 L1P3 4156 - 1519 4151 19260 133 2 0 68 1 2 146 1 0 895 0 3 37 22 7 68 0 1 426 1 0 202 0 1 67 0 1 10 0 2 48 3 4 60 1 0 78 18 18 39 2 1 58 10 24 233 chain 52470 chr13 115169878 + 29793113 29793672 L1PA2 6032 - 5 564 57315 559 chain 41849 chr13 115169878 + 29812399 29812942 MLT2A2 560 - 8 559 66830 42 1 0 97 0 11 106 1 0 29 2 1 265 chain 110963 chr13 115169878 + 29820845 29822515 L1PB1 5432 + 3768 5422 33943 26 0 3 5 3 0 84 1 0 70 7 0 413 0 5 76 1 2 23 0 3 139 0 1 9 0 3 203 1 2 195 7 0 7 1 8 48 12 15 6 3 0 24 1 0 6 1 0 13 6 2 9 2 0 52 2 1 14 5 4 36 6 5 16 1 0 15 9 0 12 30 25 14 9 8 23 5 10 19 chain 21601 chr13 115169878 + 29827861 29828163 THE1B 368 - 62 368 121765 106 6 0 19 10 9 117 2 13 42 chain 7979 chr13 115169878 + 29834571 29834696 MER85 139 + 4 139 171176 92 16 26 17 chain 15392 chr13 115169878 + 29842140 29842318 L1PA7 6471 - 5 183 140224 178 chain 3491 chr13 115169878 + 29859465 29859521 L1MC5 759 + 311 366 215498 11 8 7 37 chain 17679 chr13 115169878 + 29869784 29870149 THE1B 368 - 0 368 133748 19 43 43 6 4 0 14 1 0 43 70 74 27 0 4 138 chain 8499 chr13 115169878 + 29870234 29870334 L1MA5 2750 - 261 361 168294 100 chain 338584 chr13 115169878 + 29877270 29883146 L1PA11 4918 + 8 4578 11938 7 1 0 27 2 0 36 4 1 36 0 2 8 8 6 49 1 0 35 7 4 55 0 5 69 10 12 17 0 10 344 3 4 373 14 12 165 0 1 60 2 1 7 1 0 63 1 4 376 9 6 10 0 1 113 0 1 267 2 1 51 25 23 40 0 2 63 0 1 466 1 2 88 1 0 647 1295 0 43 0 1 34 0 27 327 1 2 170 0 3 139 0 3 65 2 1 13 2 0 65 130 82 13 2 0 11 chain 29028 chr13 115169878 + 29891569 29891874 AluYb8 318 - 13 318 88859 305 chain 504578 chr13 115169878 + 29903272 29911720 L1PA7 6471 - 6 6449 6568 6 3 0 181 9 0 146 0 1 124 308 0 286 0 10 8 1 0 82 2 0 5 5 6 7 0 4 194 0 2 101 1 0 4 0 1 28 1 0 314 1 0 226 1 0 4 0 1 195 0 4 72 131 5 862 0 3 86 1 0 92 312 0 245 317 0 521 24 6 95 5 6 353 0 4 5 1 2 180 1 0 4 0 1 57 987 0 94 1 4 171 0 2 119 6 51 231 0 1 16 0 1 236 1 0 33 0 3 61 1 5 10 7 0 114 0 1 370 3 0 128 16 17 236 chain 9418 chr13 115169878 + 29905602 29905718 L1PA7 6471 + 4962 5079 163081 28 2 3 86 chain 75102 chr13 115169878 + 29908885 29909851 MER11C 1089 + 0 1074 45966 55 0 91 167 1 5 43 0 5 174 60 59 170 5 13 211 0 1 80 chain 25756 chr13 115169878 + 29940254 29940607 THE1B 368 - 2 368 101058 123 7 15 10 0 4 10 8 6 29 1 0 27 0 4 138 chain 2902 chr13 115169878 + 29949491 29949522 MADE1 96 + 51 82 227013 31 chain 2902 chr13 115169878 + 29949549 29949580 MADE1 96 + 51 82 227012 31 chain 3773 chr13 115169878 + 29949607 29949651 MADE1 96 + 51 95 210764 44 chain 5765 chr13 115169878 + 29949794 29949935 L1PB3 3668 + 3485 3620 187478 10 1 0 6 0 4 23 5 3 23 19 16 12 1 0 13 3 1 18 1 0 6 chain 36395 chr13 115169878 + 29967758 29968210 MER4A1 472 - 0 472 74371 204 1 0 20 2 23 225 chain 21767 chr13 115169878 + 29969134 29969401 MER4D1 891 - 503 770 121148 267 chain 43516 chr13 115169878 + 29973045 29973601 MER41A 554 - 0 554 64785 18 14 11 475 0 1 49 chain 23970 chr13 115169878 + 29981627 29981915 AluSq2 311 - 23 311 110512 288 chain 108106 chr13 115169878 + 29987453 29988603 L1HS 6032 + 4880 6030 34686 1150 chain 3117 chr13 115169878 + 29998307 29998342 L1MA4 2864 + 2766 2801 222595 35 chain 6610 chr13 115169878 + 30000741 30000823 L1MB2 1706 - 194 276 180370 82 chain 36760 chr13 115169878 + 30126562 30127049 MER9a3 513 + 0 513 73862 18 0 2 87 3 4 147 0 18 129 11 13 15 1 2 57 0 2 19 chain 7815 chr13 115169878 + 30136511 30136726 Tigger4a 237 + 25 235 172217 4 1 0 12 7 0 20 0 2 32 44 42 24 4 6 12 19 20 36 chain 31298 chr13 115169878 + 30176961 30177508 MLT2A2 560 - 0 560 81995 8 0 4 122 71 91 124 14 17 14 22 21 113 13 0 46 chain 292105 chr13 115169878 + 30189614 30193792 L1PB1 5432 + 1228 5422 13890 150 35 41 350 0 1 285 0 12 24 6 0 6 0 6 9 2 6 127 1 0 86 11 18 69 0 3 77 7 0 315 6 5 10 27 28 73 0 4 271 1 3 425 1 0 87 6 8 470 3 1 106 0 1 72 1 3 158 4 7 14 5 6 63 3 0 214 10 11 161 0 2 82 0 8 32 10 9 11 20 14 48 21 19 42 1 0 15 2 1 5 2 0 9 8 0 11 30 25 20 13 12 15 1 0 10 1 0 18 chain 272872 chr13 115169878 + 30199682 30203689 L1PA10 4194 + 250 4161 15024 16 7 5 13 1 0 8 48 22 21 2 0 19 30 28 13 7 0 88 3 1 126 10 14 75 170 166 83 4 0 6 5 9 175 8 9 308 12 13 689 0 1 470 7 8 12 3 2 11 3 14 191 1 0 249 4 1 203 0 7 218 5 7 76 72 0 324 0 1 4 1 0 59 0 4 63 1 0 34 4 1 33 1 0 11 chain 519731 chr13 115169878 + 30204481 30211240 L1PA7 6471 - 12 6455 5184 333 0 1 152 0 1 266 1 0 89 0 3 82 0 1 99 0 1 848 1 14 43 0 2 6 2 0 495 3 15 8 1 0 106 334 0 65 1 0 35 0 12 123 1 2 681 1 2 75 6 10 183 31 16 32 0 1 16 10 0 343 0 1 65 0 1 42 0 1 87 14 5 740 1 0 256 0 1 5 0 1 1077 chain 565363 chr13 115169878 + 30215843 30221843 L1HS 6032 - 0 6001 191 5959 0 1 41 chain 51474 chr13 115169878 + 30234337 30234928 LTR10C 591 - 0 591 57991 50 1 0 385 0 1 155 chain 53493 chr13 115169878 + 30236329 30237080 MER4E 760 + 0 760 56687 17 5 0 134 56 59 28 0 1 18 0 7 105 1 3 76 1 0 136 0 1 24 0 1 4 1 0 34 0 1 111 chain 29488 chr13 115169878 + 30237870 30238182 AluYb8 318 + 0 312 86677 312 chain 410804 chr13 115169878 + 30240365 30245867 L1PA3long 6157 + 673 6152 9778 34 42 49 12 81 77 120 331 298 302 1 3 154 2 0 132 0 1 115 6 7 212 0 2 122 8 6 8 1 0 229 0 1 369 6 7 52 0 2 184 1 0 235 0 1 279 32 31 1587 0 4 516 1 0 328 chain 137030 chr13 115169878 + 30245891 30247547 L1PA7 6471 + 4798 6469 26634 85 3 1 69 1 0 506 0 1 158 1 0 85 0 1 268 5 6 203 1 2 14 0 8 171 0 5 75 0 2 11 chain 6657 chr13 115169878 + 30313888 30314021 MLT1C 463 + 39 168 180030 8 0 1 39 20 21 13 10 4 43 chain 34594 chr13 115169878 + 30324702 30325174 MER4A1 472 - 0 472 76764 179 37 3 45 0 21 46 0 11 150 0 2 15 chain 3634 chr13 115169878 + 30331621 30331662 MSTA 426 + 385 426 213064 41 chain 12045 chr13 115169878 + 30333966 30334215 L1PA13 3608 + 3297 3518 152007 37 1 0 22 2 0 35 1 0 3 2 0 41 9 0 8 9 5 17 1 0 23 24 16 14 chain 537443 chr13 115169878 + 30397852 30403967 L1PA5 6144 - 2 6144 3246 53 0 4 540 1 0 248 0 3 660 0 5 447 0 3 24 0 4 483 1 0 404 0 12 70 0 1 603 0 2 193 0 4 690 0 1 243 0 3 351 4 5 374 14 0 712 chain 17738 chr13 115169878 + 30406466 30406663 AluYk4 311 - 9 206 133599 197 chain 4840 chr13 115169878 + 30415061 30415116 MER57B1 401 - 346 401 196887 55 chain 4615 chr13 115169878 + 30429017 30429079 L1MA6 2487 - 89 148 199456 19 3 0 40 chain 23854 chr13 115169878 + 30431698 30431978 AluSp 311 - 11 291 111159 280 chain 6171 chr13 115169878 + 30438257 30438333 7SLRNA 320 - 115 191 183797 76 chain 28648 chr13 115169878 + 30547395 30547693 AluYk12 309 - 11 309 90527 298 chain 121908 chr13 115169878 + 30558614 30560476 L1PA16 3655 - 571 2427 30411 15 4 5 79 1 0 39 1 7 22 32 34 195 34 39 86 34 18 136 2 3 32 0 1 151 1 0 202 8 23 88 1 0 85 12 11 18 20 19 252 11 12 34 0 2 4 1 0 16 10 0 125 20 12 91 chain 2917 chr13 115169878 + 30588001 30588034 MER53 195 - 34 67 226733 33 chain 27126 chr13 115169878 + 30590917 30591299 Tigger2 2703 + 2272 2664 95844 33 2 0 5 11 14 53 1 10 277 chain 8896 chr13 115169878 + 30599859 30599972 L1PA8 5853 - 0 112 166156 93 1 0 19 chain 26255 chr13 115169878 + 30604817 30605183 THE1C 375 - 0 375 99001 25 1 0 142 30 31 126 0 9 42 chain 26279 chr13 115169878 + 30605189 30605479 L1PA2 6032 + 5737 6028 98905 137 0 1 153 chain 39943 chr13 115169878 + 30628635 30629201 LTR12 884 + 0 650 69404 25 1 0 52 11 81 30 4 5 147 1 2 35 2 0 67 2 1 99 0 13 77 0 3 13 chain 25160 chr13 115169878 + 30629492 30629787 AluY 311 + 16 310 103954 102 1 0 192 chain 41168 chr13 115169878 + 30645297 30645878 LTR9B 643 - 0 641 67682 112 0 14 75 28 29 117 0 2 68 0 1 14 0 5 5 3 0 81 0 37 10 12 15 56 chain 29582 chr13 115169878 + 30669164 30669538 THE1C 375 + 0 375 86260 182 2 3 107 1 2 56 1 0 25 chain 22160 chr13 115169878 + 30691846 30692220 THE1D 372 - 0 372 119550 33 0 1 112 66 73 71 15 5 77 chain 35029 chr13 115169878 + 30712934 30713354 L1PA8 5853 - 545 963 76146 299 2 0 119 chain 38837 chr13 115169878 + 30713356 30713861 L1PA8 5853 + 5347 5853 70968 143 0 7 56 0 1 10 1 0 45 2 0 69 2 1 9 1 0 49 11 10 16 1 0 90 chain 2985 chr13 115169878 + 30724801 30724835 MER20 218 - 149 183 225335 34 chain 8604 chr13 115169878 + 30748138 30748260 LTR36 617 - 41 160 167705 40 2 0 34 2 0 10 0 1 34 chain 26827 chr13 115169878 + 30759299 30759657 THE1B 368 - 12 367 96884 164 2 0 19 2 1 56 6 7 60 1 2 34 2 0 12 chain 3844 chr13 115169878 + 30772845 30772891 MER121 330 - 172 217 209733 40 1 0 5 chain 256337 chr13 115169878 + 30787251 30790072 L1PA3long 6157 + 3335 6157 15915 1029 0 2 1030 1 0 761 chain 4038 chr13 115169878 + 30790083 30790154 MLT1B 390 + 316 388 206804 32 10 11 29 chain 24363 chr13 115169878 + 30797311 30797604 AluY 311 + 17 308 108301 96 3 0 13 0 1 181 chain 8556 chr13 115169878 + 30803868 30804317 Charlie1b 519 - 49 478 167988 25 206 184 4 1 0 27 11 15 26 28 31 51 27 22 21 11 12 11 chain 55856 chr13 115169878 + 30818070 30818720 L1PA7 6471 - 4 657 55209 8 2 0 351 0 2 113 0 3 176 chain 189292 chr13 115169878 + 30818720 30820988 L1PA7 6471 + 3489 5770 20119 87 0 3 257 1 0 88 4 0 242 0 1 458 1 0 41 0 8 176 0 1 66 1 2 36 1 0 29 0 1 61 1 0 47 0 3 235 5 6 90 0 1 150 3 0 21 0 4 18 3 0 79 1 4 66 chain 541324 chr13 115169878 + 30833497 30839519 L1PA3long 6157 + 0 6156 2616 151 1 2 554 0 1 68 0 128 142 1 0 107 9 12 373 0 1 362 0 1 305 0 2 313 1 0 1837 6 1 928 0 4 864 chain 158499 chr13 115169878 + 30843190 30845055 SVA_D 2077 + 8 2069 23532 20 2 0 364 0 11 207 3 80 206 14 18 8 0 1 19 0 144 125 49 0 2 1 0 127 0 1 52 9 8 37 0 1 290 0 10 330 chain 2876 chr13 115169878 + 30844158 30844207 SVA_D 2077 + 1033 1084 84838 3 0 2 46 chain 28608 chr13 115169878 + 30904735 30905037 AluYa5 310 - 8 310 90702 302 chain 8698 chr13 115169878 + 30951317 30951424 MER5A 189 + 0 116 167206 35 0 9 72 chain 27183 chr13 115169878 + 30961235 30961553 AluYb8 318 + 0 306 95650 132 3 0 163 9 0 11 chain 29567 chr13 115169878 + 31071894 31072337 L1PA15 4387 - 32 454 86355 26 5 0 14 3 1 44 6 3 30 1 0 20 1 0 15 6 0 17 1 0 55 1 0 26 1 0 171 chain 23235 chr13 115169878 + 31077200 31077498 AluY 311 + 8 300 114519 48 0 1 76 14 7 160 chain 24669 chr13 115169878 + 31093550 31093851 AluY 311 + 0 295 106612 126 4 0 151 7 5 13 chain 31857 chr13 115169878 + 31098114 31098485 L1PA7 6471 + 6099 6470 81086 371 chain 23850 chr13 115169878 + 31108003 31108294 AluSp 311 - 14 311 111183 239 5 11 47 chain 25375 chr13 115169878 + 31114719 31115009 AluSp 311 - 11 300 102805 27 1 0 262 chain 26807 chr13 115169878 + 31122232 31122573 THE1C 375 + 7 350 96947 74 1 2 97 6 7 163 chain 22620 chr13 115169878 + 31130569 31130964 L1MA5A 2387 + 1917 2291 117488 23 1 2 89 1 2 10 2 0 26 1 0 10 18 19 9 1 0 47 3 1 26 1 0 32 7 4 15 14 0 59 chain 20653 chr13 115169878 + 31157700 31157979 AluSc 308 + 10 296 125124 47 5 0 177 16 28 34 chain 6068 chr13 115169878 + 31174850 31174930 Tigger4a 237 + 128 209 184673 16 1 0 35 0 2 28 chain 28160 chr13 115169878 + 31175043 31175494 LTR7B 505 + 0 495 92427 105 1 11 59 0 38 12 34 27 26 0 2 40 1 2 40 1 0 24 0 1 54 14 13 25 0 1 15 chain 29313 chr13 115169878 + 31175600 31175911 AluYa5 310 + 0 310 87487 132 1 0 178 chain 4123 chr13 115169878 + 31185920 31185970 MER21C 908 + 518 568 205618 50 chain 4573 chr13 115169878 + 31198406 31198460 MER65A 464 + 0 54 199967 54 chain 24290 chr13 115169878 + 31199574 31199879 AluSc5 308 - 2 308 108707 209 0 3 30 2 0 64 chain 7828 chr13 115169878 + 31202363 31202461 L1MB2 1706 - 190 287 172138 34 1 0 63 chain 28956 chr13 115169878 + 31202534 31202918 L1PA7 6471 - 8 390 89188 318 46 44 20 chain 37632 chr13 115169878 + 31206106 31206543 L1PA7 6471 - 3 440 72646 437 chain 7139 chr13 115169878 + 31248100 31248174 tRNA-Asn-AAC 74 - 0 74 176484 74 chain 109212 chr13 115169878 + 31262208 31263477 L1PA6 6164 - 12 1274 34392 133 0 1 489 6 0 221 1 0 273 1 0 145 chain 3252 chr13 115169878 + 31302547 31302584 MLT2F 649 + 560 597 219968 37 chain 7302 chr13 115169878 + 31315845 31315954 MER2 342 - 145 255 175425 64 11 12 34 chain 6134 chr13 115169878 + 31341093 31341368 MLT1E 632 - 192 484 184138 38 65 66 15 111 127 46 chain 8840 chr13 115169878 + 31354835 31355007 MSTB2-int 240 + 40 206 166433 5 1 0 8 0 19 13 15 0 26 6 5 33 7 0 29 1 0 28 chain 102416 chr13 115169878 + 31355437 31356565 L1PA3long 6157 - 10 1138 36160 1128 chain 3757 chr13 115169878 + 31356611 31356651 MSTB2 466 + 426 466 211003 40 chain 29541 chr13 115169878 + 31388105 31388415 AluYa5 310 - 0 310 86474 310 chain 5394 chr13 115169878 + 31408873 31409010 MER53 195 + 45 184 191045 21 44 45 18 7 8 47 chain 164315 chr13 115169878 + 31412730 31414748 SVA_D 2077 - 9 2077 22768 623 86 0 44 4 0 13 74 0 168 1 0 182 2 8 56 0 123 101 0 40 374 0 13 263 0 33 27 chain 3106 chr13 115169878 + 31413392 31413439 SVA_D 2077 - 684 731 71119 47 chain 4890 chr13 115169878 + 31413500 31413574 SVA_D 2077 - 791 865 71119 74 chain 10197 chr13 115169878 + 31450725 31450850 MER85 139 + 4 139 159632 94 0 10 31 chain 233787 chr13 115169878 + 31515880 31519453 L1PB3 3668 - 86 3655 17098 13 15 3 37 3 1 31 1 0 9 47 24 73 1 0 97 1 0 104 1 0 21 30 20 59 2 0 14 0 1 73 0 4 10 2 0 63 1 0 22 9 12 58 1 3 145 0 2 15 9 37 133 12 6 265 8 1 9 0 2 71 3 0 31 2 0 63 0 1 68 5 36 197 69 68 94 2 1 27 22 25 57 12 16 61 11 16 11 1 0 141 0 1 10 11 8 234 2 0 44 0 4 35 0 8 7 3 0 5 0 1 16 9 13 708 3 0 10 4 2 14 9 0 35 17 11 11 2 0 32 1 0 9 chain 128235 chr13 115169878 + 31521887 31523335 L1PA4 6152 - 10 1455 28512 1440 3 0 5 chain 7228 chr13 115169878 + 31523335 31523414 L1PA4 6152 + 4618 4697 170272 79 chain 13778 chr13 115169878 + 31529210 31529421 MER30 238 - 0 238 145338 100 2 0 6 9 25 69 10 23 15 chain 38277 chr13 115169878 + 31530154 31530566 L1PA4 6152 - 1 413 71741 412 chain 2911 chr13 115169878 + 31540008 31540039 MER53 195 - 132 163 226852 31 chain 10882 chr13 115169878 + 31552303 31552419 AluYb8 318 + 199 315 156654 116 chain 35501 chr13 115169878 + 31563753 31564217 L1PA8 5853 - 1 459 75553 92 1 0 16 1 0 56 1 0 9 2 1 70 2 0 44 1 0 41 0 1 128 chain 10623 chr13 115169878 + 31564224 31564344 L1PA8 5853 + 5263 5383 157719 120 chain 55884 chr13 115169878 + 31567851 31568473 L1PA4 6152 + 5525 6152 55189 616 0 5 6 chain 4127 chr13 115169878 + 31581377 31581426 L1MA10 1535 - 228 277 205557 49 chain 3040 chr13 115169878 + 31637444 31637529 MIR 256 + 32 127 224197 24 39 49 22 chain 18976 chr13 115169878 + 31646998 31647336 MSTA 426 + 1 408 130165 107 29 55 43 2 0 6 9 14 10 2 0 9 6 12 39 7 43 69 chain 21325 chr13 115169878 + 31662739 31662977 AluYa5 310 + 48 310 122774 49 1 0 95 0 25 93 chain 7919 chr13 115169878 + 31672110 31672207 LOR1a 498 - 8 104 171528 92 1 0 4 chain 32602 chr13 115169878 + 31672258 31672692 MER41A 554 + 0 441 79846 87 5 6 108 16 22 218 chain 23288 chr13 115169878 + 31702239 31702606 THE1B 368 + 0 368 114268 169 1 0 32 26 30 11 1 0 64 7 6 30 3 0 5 4 7 14 chain 23384 chr13 115169878 + 31741115 31741405 AluSg4 309 - 9 298 113742 191 1 0 98 chain 3071 chr13 115169878 + 31745055 31745110 MER51A 677 + 332 388 223556 22 9 10 24 chain 52526 chr13 115169878 + 31751910 31752712 LTR12_ 688 + 0 688 57284 123 25 0 15 5 6 336 100 0 70 0 10 128 chain 108315 chr13 115169878 + 31756325 31757710 LTR12C 1709 - 0 1709 34614 84 1 0 64 1 0 46 1 0 39 0 4 244 0 4 106 3 1 5 1 0 104 0 278 261 6 5 72 11 54 36 8 1 9 5 14 278 chain 7273 chr13 115169878 + 31766009 31766196 MER51A 677 + 315 417 175635 27 0 3 19 88 0 53 chain 25516 chr13 115169878 + 31768743 31769010 AluYa5 310 + 38 305 102159 267 chain 95744 chr13 115169878 + 31790878 31792323 L1PA15 4387 - 21 1466 37884 10 1 0 25 5 0 16 3 1 44 17 14 39 2 1 10 4 0 21 2 1 54 1 0 10 24 31 97 3 0 59 1 0 26 1 0 15 3 1 51 1 0 23 12 10 133 0 1 4 9 15 7 5 0 23 0 3 27 0 1 188 0 9 101 0 1 63 1 0 4 1 2 34 0 1 163 5 6 36 1 4 60 chain 466443 chr13 115169878 + 31824663 31831060 L1PA7 6471 + 614 6468 8176 138 1 0 29 0 1 208 7 6 208 7 8 128 16 15 586 0 1 93 1 0 24 0 1 128 1 0 405 0 3 35 1 0 140 0 2 80 0 4 540 319 0 85 5 4 11 2 0 237 1 9 265 3 0 52 1 6 125 0 13 98 0 1 254 299 0 13 0 5 54 0 1 38 0 4 305 16 16 114 1 0 83 3 7 99 12 17 304 5 12 40 0 5 19 0 1 16 1 0 87 0 4 121 0 6 524 0 7 9 chain 86359 chr13 115169878 + 31853499 31854523 MER11B 1079 - 37 1079 41013 270 0 2 436 1 18 49 2 1 266 chain 520049 chr13 115169878 + 31864005 31870408 L1PA7 6471 - 1 6471 5155 151 1 0 164 4 6 137 0 2 216 0 1 78 0 3 93 1 0 306 1 6 27 0 13 268 0 16 178 0 2 6 0 1 115 4 12 110 1 2 88 0 1 236 0 1 221 0 4 76 1 0 4 0 1 348 4 1 21 5 9 60 1 2 247 0 4 25 0 1 64 1 0 39 0 4 424 1 0 36 3 1 117 1 0 395 3 0 356 0 3 367 1 4 18 5 0 94 0 1 21 2 1 468 3 4 377 0 3 244 1 0 5 7 9 152 chain 567848 chr13 115169878 + 31876451 31882482 L1HS 6032 + 1 6032 34 6031 chain 124709 chr13 115169878 + 31912683 31914368 LTR12C 1709 - 0 1709 29473 63 1 132 37 54 24 225 0 4 113 120 0 234 0 40 290 1 0 233 1 0 4 28 29 281 chain 10079 chr13 115169878 + 31913177 31913296 LTR12C 1709 - 598 758 75322 84 0 41 35 chain 516627 chr13 115169878 + 31914728 31920646 L1PA4 6152 + 0 6143 5523 127 0 14 11 26 12 43 1 6 718 0 1 13 3 4 694 0 149 454 0 2 138 0 4 457 0 3 130 0 1 678 1 0 295 0 4 677 1 0 120 0 55 378 0 2 953 chain 33245 chr13 115169878 + 31921347 31921753 MER48 407 + 0 407 78811 261 0 1 145 chain 133447 chr13 115169878 + 31964454 31966397 HUERS-P3b-int 2065 - 13 2027 27334 13 33 8 85 6 5 58 4 0 65 6 3 15 18 11 60 3 1 40 0 1 4 1 2 7 0 6 31 1 0 23 1 0 13 3 1 43 3 1 35 10 8 42 1 0 85 0 1 164 1 2 97 0 15 92 9 13 15 1 0 4 0 1 127 1 0 27 1 0 54 1 0 86 5 1 109 8 5 40 0 1 50 0 1 69 0 104 215 3 0 55 chain 147310 chr13 115169878 + 31970114 31971770 L1PA5 6144 - 7 1663 24993 1656 chain 5197 chr13 115169878 + 31976323 31976389 LTR37A 408 + 79 145 193066 66 chain 17381 chr13 115169878 + 31978603 31978834 MER57-int 2662 + 842 1081 134561 21 6 14 204 chain 4995 chr13 115169878 + 31980482 31980541 MER57-int 2662 + 2442 2500 195202 53 1 0 5 chain 4318 chr13 115169878 + 31995053 31995107 MLT1B 390 - 302 356 202992 54 chain 80935 chr13 115169878 + 32032044 32033042 L1PA7 6471 + 5460 6459 43224 161 0 3 609 0 4 94 0 1 27 16 9 91 chain 4632 chr13 115169878 + 32047746 32047803 MER57A1 433 + 376 433 199283 57 chain 34023 chr13 115169878 + 32054299 32054720 THE1A-int 1579 - 1152 1579 77587 156 1 3 49 0 1 102 0 3 113 chain 48634 chr13 115169878 + 32070419 32070996 L1PA7 6471 + 5890 6467 60004 577 chain 24310 chr13 115169878 + 32072642 32072996 THE1A 353 - 2 353 108603 22 5 2 113 7 9 4 1 0 91 7 6 104 chain 48994 chr13 115169878 + 32103897 32104527 L1PA8 5853 + 5227 5853 59754 309 0 1 27 1 0 44 2 0 69 1 0 19 1 0 44 2 1 19 1 0 35 8 10 48 chain 252278 chr13 115169878 + 32133834 32136954 L1PA7 6471 - 3 3216 16118 7 6 0 168 0 9 152 0 1 502 0 8 18 0 4 284 6 80 126 5 1 160 0 1 382 4 5 550 17 16 14 0 1 152 1 0 208 1 2 60 0 8 63 5 2 229 chain 37672 chr13 115169878 + 32151543 32152004 LTR2 463 + 0 463 72581 25 0 1 333 15 16 88 chain 526118 chr13 115169878 + 32152800 32158764 L1PA5 6144 - 0 6141 4578 1629 0 1 8 1 0 16 1 0 1208 1 0 72 0 177 1121 0 1 309 1 0 342 0 1 1239 0 1 16 chain 38459 chr13 115169878 + 32175356 32175818 LTR2 463 - 0 463 71501 88 12 13 362 chain 138718 chr13 115169878 + 32181867 32183528 LTR12C 1709 - 0 1709 26365 333 0 2 146 0 4 104 5 3 5 1 0 38 0 2 195 0 40 335 1 2 63 0 1 169 1 2 265 chain 32730 chr13 115169878 + 32184300 32184728 LTR2B 499 - 29 465 79642 337 3 22 42 11 0 35 chain 26787 chr13 115169878 + 32197902 32198301 LTR7 482 + 0 470 97019 67 6 39 7 0 5 106 12 0 7 17 61 15 0 1 162 chain 30451 chr13 115169878 + 32202592 32202991 MER11A 1151 - 657 1145 83531 46 7 8 112 0 2 31 4 0 67 1 0 50 8 0 24 0 99 49 chain 519543 chr13 115169878 + 32206576 32212678 L1PA5 6144 - 7 6144 5210 142 0 6 7 5 0 608 4 0 195 0 3 374 0 15 315 3 2 2846 0 4 451 9 0 1001 7 33 135 chain 43607 chr13 115169878 + 32217885 32218380 MER9a2 513 + 0 494 64677 39 1 0 455 chain 24844 chr13 115169878 + 32244689 32245001 AluY 311 + 0 297 105653 126 4 0 50 1 0 112 10 0 9 chain 14913 chr13 115169878 + 32248943 32249102 L1PA4 6152 + 5826 5985 141593 159 chain 13991 chr13 115169878 + 32249102 32249256 L1PA4 6152 + 5997 6151 144605 154 chain 127525 chr13 115169878 + 32250975 32252559 L1PA7 6471 + 4876 6461 28687 77 1 0 24 3 2 7 0 1 154 3 4 338 0 1 137 1 0 74 0 2 5 5 3 570 14 12 67 0 2 82 0 1 22 chain 46308 chr13 115169878 + 32253061 32253592 L1PA5 6144 - 0 531 61766 531 chain 9658 chr13 115169878 + 32260557 32260760 MLT1C 463 - 8 215 162310 91 67 71 45 chain 4374 chr13 115169878 + 32261830 32261887 MER2 342 + 20 77 202266 57 chain 314356 chr13 115169878 + 32262096 32266630 L1P3 4156 + 27 4139 12832 130 0 1 84 6 20 58 3 2 81 31 0 261 36 39 115 1 15 89 16 0 424 4 5 49 53 16 370 61 0 240 1 0 119 309 0 178 0 1 232 0 1 81 7 1 590 13 17 744 0 1 15 1 4 97 2 0 7 2 1 24 chain 3109 chr13 115169878 + 32263929 32263966 L1P3 4156 + 1746 1783 222755 37 chain 40636 chr13 115169878 + 32267210 32268379 L1PA7 6471 - 5 494 68389 360 680 0 129 chain 12616 chr13 115169878 + 32268083 32268227 L1PA7 6471 - 197 341 149787 144 chain 6680 chr13 115169878 + 32281112 32281194 L1PA8 5853 + 5771 5853 179828 82 chain 77409 chr13 115169878 + 32286655 32287627 L1PA7 6471 - 9 1939 44775 27 9 0 8 14 23 128 1 3 652 1 0 33 0 956 66 1 2 32 chain 23906 chr13 115169878 + 32297503 32297808 L1PA5 6144 - 3 301 110875 6 4 0 63 4 1 228 chain 69630 chr13 115169878 + 32298328 32299199 L1PA8 5853 + 4987 5853 48557 12 1 0 7 6 7 354 0 1 196 1 0 44 2 0 52 0 1 18 1 0 9 1 0 52 2 1 19 1 0 93 chain 22407 chr13 115169878 + 32308298 32308585 AluY 311 + 14 288 118457 94 21 10 15 2 0 155 chain 3398 chr13 115169878 + 32321832 32321874 MADE1 96 + 48 90 217093 42 chain 23140 chr13 115169878 + 32374452 32374737 AluY 311 + 27 311 114935 100 1 0 184 chain 35427 chr13 115169878 + 32397689 32398144 MER41A 554 + 89 554 75646 78 0 1 136 1 0 148 0 10 92 chain 45412 chr13 115169878 + 32409420 32409911 L1PA2 6032 - 0 494 62580 486 0 3 5 chain 53110 chr13 115169878 + 32437643 32438264 L1PA6 6164 + 5426 6045 56956 576 3 1 42 chain 35508 chr13 115169878 + 32548655 32549211 HSMAR2 1300 + 11 616 75542 28 1 0 22 10 70 67 0 1 82 5 5 6 1 0 45 32 32 34 2 0 86 9 0 53 0 1 73 chain 24529 chr13 115169878 + 32557364 32557718 THE1A 353 + 0 353 107382 15 2 0 32 0 1 35 12 11 139 8 9 111 chain 123873 chr13 115169878 + 32557718 32559587 THE1A-int 1579 + 0 1574 29740 281 2 0 5 6 8 62 0 1 141 316 8 48 0 2 488 0 10 520 chain 24901 chr13 115169878 + 32559592 32559945 THE1A 353 + 0 351 105338 15 2 0 32 0 1 33 14 13 17 0 2 6 8 6 226 chain 3819 chr13 115169878 + 32568715 32568921 LTR12D 1347 - 695 756 210110 20 1 0 19 144 0 22 chain 140063 chr13 115169878 + 32573607 32575275 SVA_D 2077 + 0 2077 26133 7 1 0 17 2 1 14 0 27 398 0 116 35 40 0 35 3 0 188 0 223 127 0 1 11 0 86 16 12 13 73 0 1 4 9 8 676 chain 19325 chr13 115169878 + 32617112 32617466 THE1B 368 - 0 368 129169 125 87 99 28 6 7 61 0 1 47 chain 165434 chr13 115169878 + 32643855 32645785 L1PA6 6164 - 2 1934 22601 578 7 4 184 1 3 70 7 8 114 0 3 639 2 1 328 chain 53484 chr13 115169878 + 32668792 32669944 L1MA2 4263 - 150 982 56692 8 1 0 29 1 0 18 7 0 81 21 19 35 16 27 90 16 12 132 1 0 7 0 1 24 0 4 40 0 1 4 6 1 57 1 2 79 321 3 79 1 2 77 chain 21150 chr13 115169878 + 32677516 32677799 L1PA4 6152 + 5864 6143 123370 115 17 21 6 4 0 77 8 4 56 chain 86204 chr13 115169878 + 32694628 32696227 L1PB1 5432 - 12 1265 41072 16 1 0 13 1 0 21 1 0 24 2 0 6 16 13 19 19 8 4 1 0 15 314 0 44 11 17 53 2 0 9 16 11 9 1 0 21 3 0 12 1 2 47 20 21 220 4 3 15 10 1 36 0 1 43 2 1 86 0 1 461 chain 59333 chr13 115169878 + 32696227 32697409 L1PB 1623 + 757 1585 53202 61 314 0 489 4 0 139 1 0 7 2 1 30 1 0 5 3 0 12 5 1 14 61 37 22 2 0 10 chain 30336 chr13 115169878 + 32719663 32719980 AluYb8 318 - 1 318 83827 317 chain 23036 chr13 115169878 + 32720483 32720755 AluSg7 307 - 19 292 115469 156 0 1 116 chain 22920 chr13 115169878 + 32730466 32730758 AluSp 311 + 4 302 116011 46 5 11 241 chain 13669 chr13 115169878 + 32788471 32788680 MER30 238 + 0 235 145711 104 21 26 22 1 5 11 0 17 50 chain 20306 chr13 115169878 + 32822435 32822678 L1PA7 6471 + 6226 6469 126222 243 chain 28456 chr13 115169878 + 32847356 32847658 AluYf4 310 - 8 310 91353 302 chain 11119 chr13 115169878 + 32896233 32896419 L1MC2 1988 - 245 434 155736 30 39 42 117 chain 36077 chr13 115169878 + 32896419 32896852 MER9a3 513 - 0 480 74787 57 1 5 51 0 41 157 0 2 167 chain 18286 chr13 115169878 + 32901583 32901824 AluY 311 + 57 297 132112 65 3 5 110 4 1 59 chain 5179 chr13 115169878 + 32902866 32902928 MER53 195 + 122 184 193230 62 chain 24081 chr13 115169878 + 32915761 32916019 AluYa5 310 + 40 296 109868 83 2 0 173 chain 6708 chr13 115169878 + 32918924 32919014 Charlie1a 1436 - 20 109 179630 85 1 0 4 chain 47965 chr13 115169878 + 32924995 32925669 LTR12_ 688 + 0 688 60514 138 18 26 92 8 9 78 5 6 80 0 3 5 4 1 172 3 7 71 chain 21776 chr13 115169878 + 32930184 32930495 AluSp 311 - 17 300 121111 152 47 19 112 chain 24093 chr13 115169878 + 32946823 32947112 THE1D-int 1627 - 6 294 109780 120 1 0 168 chain 80678 chr13 115169878 + 32961286 32962244 LTR13A 966 + 0 966 43314 143 5 11 328 1 0 329 0 1 16 1 0 97 0 3 38 chain 10733 chr13 115169878 + 32962619 32962803 MER47A 366 + 114 296 157267 53 22 19 69 12 13 28 chain 3435 chr13 115169878 + 32971588 32971626 MIR 256 - 62 100 216474 38 chain 28477 chr13 115169878 + 32991352 32991708 THE1C 375 + 2 365 91279 137 1 5 78 0 4 124 1 0 15 chain 116777 chr13 115169878 + 32991736 32993236 THE1C-int 1605 + 27 1603 32197 66 7 64 78 1 7 36 0 4 45 0 6 27 0 1 12 4 0 72 0 7 303 6 2 540 11 14 231 1 0 4 0 1 56 chain 4683 chr13 115169878 + 32993236 32993291 THE1C 375 + 18 75 198724 48 0 2 7 chain 4902 chr13 115169878 + 32993302 32993360 THE1C 375 + 84 142 196256 58 chain 2300 chr13 115169878 + 32993708 32993738 THE1C 375 + 154 186 235390 18 0 2 12 chain 13551 chr13 115169878 + 32993742 32993905 THE1C 375 + 190 350 146163 71 3 0 89 chain 17268 chr13 115169878 + 33064800 33065027 MER1B 344 - 78 299 134870 14 1 0 32 4 0 21 1 0 154 chain 24437 chr13 115169878 + 33094509 33094824 AluY 311 + 0 304 107873 50 4 0 244 7 0 10 chain 10455 chr13 115169878 + 33097854 33098069 L1PB1 5432 + 5208 5404 158470 12 2 1 15 1 0 41 30 20 30 8 5 14 2 0 24 1 0 21 1 0 13 chain 9611 chr13 115169878 + 33122994 33123273 L1MB2 1706 + 1398 1689 162536 47 13 17 27 17 40 39 81 67 18 6 5 31 chain 38425 chr13 115169878 + 33134952 33135432 MER41B 635 + 154 635 71548 202 0 1 19 1 0 5 0 1 86 1 0 43 0 1 123 chain 114162 chr13 115169878 + 33149439 33150729 L1PA5 6144 + 4856 6142 33045 1279 4 0 7 chain 122748 chr13 115169878 + 33151340 33152895 THE1C-int 1605 + 17 1599 30139 117 0 1 37 1 0 73 1 8 192 0 7 269 0 16 21 6 0 546 0 1 271 0 2 21 chain 518085 chr13 115169878 + 33176243 33182311 L1PA5 6144 - 12 6142 5374 139 5 0 279 0 1 318 0 3 467 1 0 424 0 12 152 0 9 422 0 1 173 0 2 534 1 0 108 0 6 66 5 4 123 2 0 317 0 3 226 0 2 35 0 1 4 1 0 269 0 1 573 0 3 158 0 1 104 0 11 12 17 8 112 1 0 80 0 1 250 0 1 194 0 4 12 6 1 338 7 33 133 chain 22231 chr13 115169878 + 33194518 33194812 AluY 311 + 6 301 119204 84 5 8 32 1 2 38 11 8 123 chain 9215 chr13 115169878 + 33204459 33204673 MER20 218 + 22 218 164481 62 28 17 51 50 43 23 chain 92185 chr13 115169878 + 33228971 33230732 L1PA15 4387 - 31 1464 38907 16 14 12 15 7 5 15 4 6 14 14 11 45 4 3 10 4 0 19 1 0 55 1 0 25 2 1 91 4 0 81 0 2 41 7 5 36 333 18 15 0 3 83 10 21 308 13 14 151 15 5 59 5 4 52 7 6 81 0 1 104 chain 69088 chr13 115169878 + 33288026 33289251 MER11B 1079 - 0 1079 48768 8 0 1 10 0 1 4 5 6 130 10 9 54 0 1 87 6 0 34 152 1 38 1 0 4 1 5 75 84 82 146 1 0 63 4 8 48 3 0 9 4 13 87 2 0 155 chain 7056 chr13 115169878 + 33288374 33288472 MER11B 1079 - 346 447 177063 38 1 0 4 1 5 54 chain 177078 chr13 115169878 + 33289761 33291842 SVA_D 2077 + 0 2077 21245 432 1 0 134 2 1 195 40 0 154 1 38 33 0 51 48 1 0 133 49 0 169 0 1 4 9 8 676 chain 1185 chr13 115169878 + 33290525 33290561 SVA_D 2077 + 722 761 179796 1 0 3 35 chain 4047 chr13 115169878 + 33290935 33290984 SVA_D 2077 + 1346 1444 81181 6 0 49 43 chain 132166 chr13 115169878 + 33294785 33296515 SVA_B 1603 - 6 1595 27600 648 0 1 12 2 45 234 193 0 586 0 5 22 19 22 14 chain 176301 chr13 115169878 + 33303089 33305209 L1PA8 5853 - 10 2123 21330 82 2 1 19 2 1 51 1 0 10 1 0 71 3 1 45 1 0 526 5 8 17 0 2 100 7 4 18 1 0 148 1 0 776 1 0 4 0 1 228 chain 17639 chr13 115169878 + 33380417 33380632 AluY 311 + 82 290 133879 202 7 0 6 chain 14128 chr13 115169878 + 33390028 33390252 MER30 238 - 1 238 144116 26 16 13 60 0 29 11 13 0 98 chain 12158 chr13 115169878 + 33400638 33400788 LTR8 732 + 582 732 151578 150 chain 4597 chr13 115169878 + 33438791 33438871 Tigger9a 622 + 114 195 199673 22 14 15 44 chain 31403 chr13 115169878 + 33439846 33440272 MLT2A1 477 + 0 477 81812 117 0 1 24 0 1 19 7 11 143 0 1 54 0 4 10 1 37 45 0 4 6 chain 143204 chr13 115169878 + 33441834 33443365 L1HS 6032 - 1 1532 25613 1531 chain 4037 chr13 115169878 + 33453369 33453419 LTR16C 481 + 413 463 206827 50 chain 141985 chr13 115169878 + 33504493 33506154 L1PA7 6471 - 13 1676 25826 322 1 0 270 0 1 248 0 3 98 0 1 391 0 1 168 3 0 160 chain 30677 chr13 115169878 + 33509297 33509858 L1PB1 5432 - 10 579 83076 18 1 0 12 1 0 22 1 0 25 18 22 15 1 0 12 11 0 8 0 2 6 2 1 43 1 0 15 2 1 52 17 12 12 1 0 6 1 0 25 0 1 5 13 14 30 1 2 78 14 38 92 chain 5639 chr13 115169878 + 33527142 33527303 L1PB1 5432 - 12 149 188662 16 1 0 13 1 0 21 1 0 22 64 46 6 3 0 13 chain 85122 chr13 115169878 + 33537347 33538293 L1PA3long 6157 + 5199 6145 41474 946 chain 9081 chr13 115169878 + 33546940 33547072 MER30 238 + 88 238 165158 16 7 25 109 chain 4425 chr13 115169878 + 33569475 33569556 L1MA4 2864 - 63 140 201649 35 4 2 23 5 3 14 chain 23138 chr13 115169878 + 33585334 33585770 L1MA8 2339 + 1329 1766 114948 47 0 13 25 2 1 53 1 0 63 8 11 69 87 75 52 1 0 28 chain 20600 chr13 115169878 + 33664271 33664628 THE1C 375 - 1 362 125295 6 0 4 15 1 0 100 4 27 24 37 17 61 6 7 59 10 7 34 chain 15266 chr13 115169878 + 33708318 33708536 MER30 238 - 4 238 140583 35 3 0 61 2 0 6 5 26 106 chain 7792 chr13 115169878 + 33717167 33717305 MLT1A 405 + 220 360 172348 32 33 36 46 1 0 26 chain 63047 chr13 115169878 + 33736212 33737070 THE1A-int 1579 - 0 1578 51430 155 0 701 34 4 5 300 4 0 42 6 30 141 5 1 154 1 3 12 chain 26551 chr13 115169878 + 33737071 33737426 THE1A 353 - 0 353 97834 259 9 8 37 0 1 35 2 0 13 chain 11885 chr13 115169878 + 33756631 33756838 MER30 238 - 5 219 152679 22 4 4 15 3 0 25 6 0 8 1 7 24 4 20 81 6 0 8 chain 59612 chr13 115169878 + 33789926 33790822 L1PB1 5432 + 4544 5404 53045 82 2 0 115 0 1 8 2 0 63 1 0 290 1 2 12 3 0 29 1 0 12 5 1 8 2 0 53 18 16 44 1 0 16 3 0 6 16 6 15 35 30 17 1 0 20 2 1 13 chain 93621 chr13 115169878 + 33815700 33816900 SVA_B 1603 + 44 1600 38467 485 81 1 15 5 84 36 1 198 36 2 162 539 chain 32335 chr13 115169878 + 33867679 33868127 MLT2A1 477 + 0 477 80294 117 0 1 51 4 1 28 5 0 182 18 54 43 chain 14635 chr13 115169878 + 33873135 33873358 Tigger3a 397 + 48 333 142477 27 19 68 143 1 14 33 chain 13685 chr13 115169878 + 33880008 33880180 L1PA10 4194 + 3981 4150 145649 135 3 0 34 chain 13985 chr13 115169878 + 33921698 33921869 Tigger3a 397 + 152 323 144631 171 chain 141524 chr13 115169878 + 33931934 33933665 LTR12C 1709 + 0 1709 25896 773 34 17 46 2 1 274 1 0 5 3 1 107 0 4 108 0 1 62 10 0 10 7 11 289 chain 22375 chr13 115169878 + 33935655 33936035 MSTA 426 - 0 426 118604 109 3 24 42 54 53 61 0 3 5 0 21 37 8 10 61 chain 518602 chr13 115169878 + 33992106 33998232 L1PA6 6164 + 1 6156 5321 466 1 0 978 3 1 81 0 12 303 0 1 280 7 9 201 0 1 89 1 2 551 0 1 57 0 1 135 0 2 12 0 1 24 0 6 85 1 0 267 0 1 898 0 3 180 2 1 533 4 6 967 chain 8995 chr13 115169878 + 34002799 34003003 L1MA1 4479 + 4014 4190 165627 6 0 1 16 0 1 32 0 1 7 1 0 27 2 0 31 65 37 17 chain 37894 chr13 115169878 + 34011145 34011609 LTR2 463 + 0 463 72293 263 2 0 99 12 13 88 chain 6367 chr13 115169878 + 34030166 34030245 MER58B 340 + 155 234 182270 79 chain 3976 chr13 115169878 + 34030908 34030986 MLT1A0 366 + 205 295 207754 15 23 35 40 chain 42722 chr13 115169878 + 34036530 34037081 MLT2A2 560 - 0 554 65748 147 3 14 381 8 0 12 chain 102361 chr13 115169878 + 34044051 34045288 L1PA7 6471 - 6 1227 36179 21 0 1 29 2 4 87 5 11 210 25 0 481 1 0 161 0 1 215 chain 18479 chr13 115169878 + 34055915 34056148 AluY 311 + 81 306 131558 51 0 1 10 3 0 19 1 0 135 5 0 9 chain 13263 chr13 115169878 + 34060470 34060684 MER44A 345 - 41 266 147241 18 6 6 58 1 2 98 11 21 22 chain 28136 chr13 115169878 + 34066004 34066394 LTR7 482 - 5 482 92519 44 13 14 41 0 1 56 0 2 13 0 1 41 8 40 73 0 50 101 chain 45239 chr13 115169878 + 34066486 34067038 MER41A 554 + 0 554 62783 472 0 2 80 chain 209039 chr13 115169878 + 34075474 34077937 L1PA6 6164 - 951 3420 18565 249 22 0 9 0 22 68 0 1 69 0 6 110 3 0 92 3 0 794 0 1 87 1 3 166 0 1 345 0 1 445 chain 76326 chr13 115169878 + 34077937 34078853 L1PA6 6164 + 5201 6116 45023 114 1 0 701 1 2 4 1 0 94 chain 4008 chr13 115169878 + 34078854 34078898 L1PA6 6164 + 6116 6160 207256 44 chain 4656 chr13 115169878 + 34087226 34087287 MER58B 340 + 271 335 199007 12 0 1 40 0 2 9 chain 3895 chr13 115169878 + 34090839 34090883 MER33 330 + 54 98 208929 44 chain 5542 chr13 115169878 + 34134057 34134127 MLT1A 405 + 252 322 189640 70 chain 24014 chr13 115169878 + 34138852 34139149 AluSc8 310 + 4 308 110252 128 0 3 127 5 9 37 chain 25553 chr13 115169878 + 34146319 34146635 MER57B1 401 + 1 318 101969 42 2 1 41 0 2 231 chain 93434 chr13 115169878 + 34152089 34153526 L1PB3 3668 + 2146 3566 38525 104 5 4 86 1 3 62 0 1 53 94 98 110 18 14 59 1 0 176 0 2 70 2 0 16 10 8 177 2 0 102 1 0 97 6 5 62 0 4 19 18 4 45 4 2 37 chain 24947 chr13 115169878 + 34156085 34156377 AluY 311 + 10 301 105067 123 1 0 168 chain 25654 chr13 115169878 + 34158306 34158699 MSTA 426 - 0 400 101472 43 16 9 29 4 2 11 0 2 79 6 16 22 2 0 9 4 10 168 chain 24607 chr13 115169878 + 34158891 34159228 MSTA 426 + 82 426 106955 112 8 12 29 6 16 116 7 0 59 chain 88882 chr13 115169878 + 34163228 34164229 L1P1 4361 - 1011 2011 40050 191 1 0 809 chain 67254 chr13 115169878 + 34164229 34164991 L1PA5 6144 + 5377 6132 49511 613 7 0 142 chain 6864 chr13 115169878 + 34212184 34212274 MER4E 760 - 0 89 178467 68 2 1 20 chain 42179 chr13 115169878 + 34215052 34215786 MER39B 650 - 73 650 66425 302 165 6 61 0 1 17 16 17 173 chain 28532 chr13 115169878 + 34224316 34224626 AluYa5 310 - 0 310 91040 310 chain 49701 chr13 115169878 + 34246038 34246667 L1PA8 5853 + 5228 5853 59236 264 0 2 61 8 7 48 2 0 68 2 1 9 3 2 8 1 2 40 2 1 19 1 0 93 chain 28688 chr13 115169878 + 34259012 34259594 MER51B 395 + 0 395 90377 39 13 0 112 32 0 14 160 18 62 1 0 5 0 1 144 chain 19606 chr13 115169878 + 34293182 34293562 THE1D 372 + 0 372 128369 76 47 29 61 0 6 6 50 48 12 2 8 126 chain 40155 chr13 115169878 + 34310770 34311277 LTR12F 595 + 11 595 69102 89 0 85 25 16 7 178 0 1 199 chain 6033 chr13 115169878 + 34339979 34340051 MER4B 649 + 500 572 184946 72 chain 27188 chr13 115169878 + 34348733 34349025 AluYa5 310 + 0 293 95638 73 0 1 219 chain 19323 chr13 115169878 + 34364301 34364655 L1PB2 3958 + 3470 3838 129173 40 53 58 50 1 0 15 1 15 33 2 1 67 6 4 21 2 1 63 chain 3389 chr13 115169878 + 34438928 34438965 MSTB 430 - 376 413 217296 37 chain 142613 chr13 115169878 + 34460773 34462326 L1PA3long 6157 - 0 1560 25710 1009 0 7 544 chain 4190 chr13 115169878 + 34486166 34486212 MADE1 96 - 50 96 204690 46 chain 36996 chr13 115169878 + 34500097 34500504 L1PA3long 6157 + 5749 6156 73516 407 chain 43511 chr13 115169878 + 34504264 34504809 MLT2A2 560 - 0 560 64800 6 0 4 137 3 14 399 chain 544247 chr13 115169878 + 34558815 34564829 L1PA3long 6157 + 4 6156 2179 149 0 1 328 0 8 277 10 138 3172 3 2 1056 0 1 780 1 2 238 chain 393100 chr13 115169878 + 34623775 34628634 L1PA8 5853 - 15 5738 10350 76 5 4 17 2 1 39 8 0 6 1 8 8 1 0 71 2 0 43 2 1 4 0 1 11 0 1 295 1 0 71 5 15 43 2 24 90 0 2 631 7 6 86 0 14 209 0 2 267 7 0 218 1 2 159 0 1 25 3 0 505 1 0 37 0 10 193 0 11 98 0 1 4 1 0 5 0 7 245 0 1 251 0 1 111 0 2 126 0 3 23 0 1 464 0 1 111 0 789 78 0 4 190 chain 102767 chr13 115169878 + 34661612 34663055 THE1D-int 1627 + 63 1621 36061 274 9 111 112 0 8 140 5 0 8 3 9 18 16 17 14 5 1 260 0 9 111 60 57 343 0 1 65 chain 12819 chr13 115169878 + 34663060 34663376 THE1D 372 + 0 372 148982 56 136 190 45 0 2 79 chain 25414 chr13 115169878 + 34664408 34664720 AluYk4 311 + 0 310 102620 253 2 0 57 chain 21701 chr13 115169878 + 34679461 34679732 AluSx1 309 + 14 298 121385 183 6 19 82 chain 6716 chr13 115169878 + 34695837 34695927 MER39 703 - 83 174 179564 14 1 2 75 chain 38339 chr13 115169878 + 34697203 34697676 LTR2 463 + 0 463 71667 210 32 22 231 chain 3228 chr13 115169878 + 34703158 34703196 MER58C 217 + 146 184 220468 38 chain 7146 chr13 115169878 + 34720074 34720472 L1MB3 1562 - 82 481 176437 11 1 0 26 25 28 53 250 249 32 chain 39841 chr13 115169878 + 34727529 34728021 LTR10D 510 - 0 510 69551 245 1 3 31 1 0 101 0 2 40 5 20 68 chain 2811 chr13 115169878 + 34742830 34742860 MLT1A1-int 1737 - 1687 1717 228619 30 chain 63915 chr13 115169878 + 34755567 34756262 SVA_D 2077 + 1232 2062 51046 134 0 135 561 chain 75931 chr13 115169878 + 34765057 34766014 L1PA7 6471 + 5512 6467 45526 65 1 2 42 1 0 82 0 1 67 6 8 178 1 0 305 2 1 192 3 0 12 chain 33519 chr13 115169878 + 34770362 34770732 L1PA3long 6157 - 15 385 78373 370 chain 257440 chr13 115169878 + 34805399 34808633 L1PA8A 6298 - 11 3263 15851 100 7 6 284 0 5 388 0 1 11 0 3 118 0 1 85 0 1 42 6 5 25 0 1 386 5 0 335 0 2 610 1 2 18 1 2 134 0 9 225 0 2 33 2 0 5 1 0 5 0 3 75 14 12 318 chain 24733 chr13 115169878 + 34837427 34837723 AluY 311 + 0 291 106258 122 4 0 155 1 0 14 chain 7667 chr13 115169878 + 34841620 34841817 MER57C2 434 - 141 347 173131 7 0 11 61 25 24 39 50 49 15 chain 12705 chr13 115169878 + 34846209 34846482 L1PA11 4918 - 340 590 149435 11 2 0 28 52 37 13 6 5 10 2 0 67 2 0 13 10 9 57 chain 28864 chr13 115169878 + 34856793 34857155 L1PBa 3878 - 1491 1854 89607 20 0 1 342 chain 91801 chr13 115169878 + 34858420 34860031 L1PB1 5432 + 4004 5423 39029 139 0 1 178 0 2 292 1 4 8 0 1 13 23 0 155 25 19 110 0 2 153 159 22 11 1 0 24 1 0 4 34 27 48 3 5 15 7 6 32 6 5 16 1 0 5 27 10 15 25 20 23 5 4 19 1 0 26 1 0 5 chain 19725 chr13 115169878 + 34906583 34906954 THE1D 372 - 0 372 128029 94 10 11 21 71 81 57 1 0 53 9 0 55 chain 13466 chr13 115169878 + 34912595 34912861 L1PB1 5432 + 5168 5423 146463 44 1 0 8 20 18 43 1 0 15 15 16 14 10 7 13 2 0 24 1 0 21 1 0 13 1 0 19 chain 45258 chr13 115169878 + 34916638 34917196 MLT2A2 560 - 0 559 62759 356 0 1 10 1 5 4 4 0 183 chain 16833 chr13 115169878 + 34926327 34926528 MER107 203 + 0 203 136034 134 0 1 10 0 1 57 chain 3687 chr13 115169878 + 34940808 34941030 L1PA8 5853 + 5385 5606 81423 173 8 7 41 chain 126030 chr13 115169878 + 34941030 34942449 L1PA5 6144 + 4716 6140 29088 578 0 1 301 0 2 181 0 2 359 chain 3753 chr13 115169878 + 34942487 34942713 L1PA8 5853 + 5608 5830 81423 71 1 0 15 7 6 40 3 2 18 1 0 70 chain 82963 chr13 115169878 + 34960596 34961527 L1PA4 6152 - 9 940 42352 931 chain 80572 chr13 115169878 + 34961527 34962424 L1P1 4361 + 2779 3681 43357 14 0 5 883 chain 51676 chr13 115169878 + 34972592 34973162 L1PA4 6152 - 1 572 57840 147 0 1 423 chain 37120 chr13 115169878 + 35049345 35049795 L1PA7 6471 - 1 454 73355 145 3 5 188 0 1 114 chain 566333 chr13 115169878 + 35054399 35060431 L1HS 6032 - 0 6032 129 6032 chain 408200 chr13 115169878 + 35068507 35073243 L1PA5 6144 + 1396 6144 9851 751 0 1 162 1 0 206 1 3 14 0 1 424 2 4 436 1 0 215 1 4 58 1 0 280 5 6 608 0 2 720 0 4 837 2 1 11 chain 122180 chr13 115169878 + 35103030 35104582 THE1A-int 1579 + 7 1579 30321 162 2 1 5 0 1 78 12 11 237 1 0 372 4 5 333 5 16 8 0 2 22 1 0 263 0 9 47 chain 27497 chr13 115169878 + 35104584 35104936 THE1A 353 + 2 353 94661 100 9 8 243 chain 140610 chr13 115169878 + 35114008 35115850 SVA_F 1814 + 10 1548 26053 424 0 1 464 276 0 49 52 18 161 1 0 50 1 0 10 2 0 160 0 9 192 chain 1643 chr13 115169878 + 35114896 35114931 SVA_F 1814 + 1139 1174 167781 35 chain 1992 chr13 115169878 + 35114932 35114957 SVA_F 1814 + 936 1024 142389 6 0 63 19 chain 8251 chr13 115169878 + 35114962 35115151 SVA_F 1814 + 916 1119 121730 32 5 20 33 1 0 118 chain 2740 chr13 115169878 + 35115221 35115250 SVA_F 1814 + 899 928 186616 29 chain 45197 chr13 115169878 + 35126653 35127170 L1PA4 6152 + 5632 6152 62826 368 2 5 147 chain 177367 chr13 115169878 + 35137748 35140229 L1PB1 5432 + 2967 5417 21218 511 0 2 86 5 3 49 0 6 108 2 0 84 5 6 112 1 0 286 2 3 81 2 0 147 2 1 162 9 7 80 0 1 102 9 23 217 14 15 40 83 59 9 2 0 50 9 8 12 1 0 37 7 6 16 71 57 17 1 0 21 1 0 13 1 0 9 1 0 4 chain 12560 chr13 115169878 + 35142118 35142277 L1PB4 2604 + 2386 2545 150008 159 chain 2739 chr13 115169878 + 35179850 35179889 MER39 703 + 544 579 229627 19 4 0 16 chain 35764 chr13 115169878 + 35183903 35184540 L1PB1 5432 + 4847 5427 75181 249 46 21 21 37 30 51 1 0 17 1 0 45 1 0 15 24 12 19 25 20 23 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 41967 chr13 115169878 + 35204100 35204653 MER41A 554 - 0 554 66667 156 0 1 180 37 37 180 chain 5902 chr13 115169878 + 35206072 35206149 MER34A1 583 - 49 125 186175 16 1 0 60 chain 121869 chr13 115169878 + 35225438 35227076 THE1B-int 1605 + 1 1595 30424 281 0 15 132 38 21 198 54 1 98 0 9 183 0 2 654 chain 29339 chr13 115169878 + 35243886 35244274 MLT2A1 477 + 0 382 87357 147 6 3 18 5 2 34 6 6 172 chain 29462 chr13 115169878 + 35249159 35249582 MER57A1 433 + 1 424 86791 243 20 0 15 3 26 5 2 0 86 1 0 48 chain 24064 chr13 115169878 + 35250659 35250942 L1PA5 6144 - 3 292 109962 214 0 6 69 chain 56950 chr13 115169878 + 35262237 35262859 L1PA3long 6157 + 5520 6142 54561 622 chain 10439 chr13 115169878 + 35274151 35274278 MER34C2 569 + 417 543 158533 21 1 0 105 chain 23980 chr13 115169878 + 35281447 35281736 AluY 311 + 0 284 110441 108 0 1 17 7 0 49 1 2 107 chain 17438 chr13 115169878 + 35314253 35314616 THE1B 368 - 0 368 134413 40 23 22 53 32 44 17 22 15 35 33 34 108 chain 374310 chr13 115169878 + 35315067 35321151 L1PB1 5432 - 21 5413 10949 7 1 0 13 1 0 21 1 0 24 2 0 13 9 6 19 15 5 7 3 0 16 1 0 43 1 0 16 2 1 53 2 0 8 849 56 28 0 1 109 0 4 146 12 13 181 3 0 88 0 5 279 4 26 405 5 8 74 0 5 119 0 6 37 8 48 485 1 2 80 15 16 38 6 9 46 8 7 18 0 12 151 20 25 8 0 13 113 1 0 64 1 7 167 7 8 45 16 9 169 6 7 604 19 11 5 2 0 7 1 0 159 26 23 204 0 11 262 0 1 116 0 11 7 11 0 37 29 29 126 0 3 5 18 11 10 0 14 186 27 27 99 1 2 33 chain 50165 chr13 115169878 + 35327411 35328083 LTR12_ 688 + 0 688 58896 31 4 5 61 2 18 249 0 1 107 1 0 42 3 2 101 0 1 4 1 0 66 chain 30331 chr13 115169878 + 35340098 35340534 MER1A 529 + 43 486 83839 37 17 17 41 0 3 192 5 4 54 0 3 57 12 14 21 chain 3907 chr13 115169878 + 35362874 35362933 LTR37A 408 - 22 83 208752 13 3 5 43 chain 9024 chr13 115169878 + 35364766 35364940 LTR35 598 - 388 549 165469 30 2 1 42 10 0 31 26 24 33 chain 9512 chr13 115169878 + 35373390 35373495 LTR7Y 441 + 334 441 163011 10 0 2 95 chain 245893 chr13 115169878 + 35373495 35376472 HERVH-int 3825 + 0 3482 16456 199 5 237 53 2 0 11 21 20 12 5 0 35 5 4 9 1 0 24 29 0 14 1 0 13 12 9 10 0 61 44 0 1 7 0 2 13 0 3 671 0 2 231 4 31 299 0 10 1095 4 214 148 chain 34132 chr13 115169878 + 35377067 35377485 LTR7Y 441 + 0 403 77435 165 31 0 88 0 16 134 chain 35302 chr13 115169878 + 35433749 35434172 L1PA8A 6298 + 5873 6291 75794 215 5 0 203 chain 3737 chr13 115169878 + 35436096 35436140 MSTB 430 + 358 402 211354 44 chain 30354 chr13 115169878 + 35475262 35475599 L1PA3long 6157 - 1 338 83766 337 chain 8960 chr13 115169878 + 35493071 35493181 Tigger4a 237 - 3 113 165833 110 chain 38879 chr13 115169878 + 35506805 35507236 L1PA4 6152 + 5720 6151 70899 431 chain 90189 chr13 115169878 + 35549312 35550666 L1PB1 5432 + 4027 5392 39579 131 6 10 137 6 34 169 12 14 83 0 4 20 0 1 120 0 1 44 0 1 127 1 0 168 25 23 24 1 0 6 1 0 13 22 16 35 13 13 16 1 0 45 1 0 14 1 0 4 21 11 12 7 5 4 1 0 12 2 0 26 1 0 22 chain 468113 chr13 115169878 + 35557172 35562810 L1PA6 6164 - 11 6163 8104 199 3 1 246 0 2 383 0 4 159 18 1 222 21 12 159 0 1 219 0 6 842 0 1 12 2 1 224 1 4 29 0 1 225 0 1 66 0 1 729 1 23 54 0 1 115 0 3 69 0 2 82 0 1 54 0 10 132 0 4 413 0 1 318 1 2 82 0 222 117 8 0 23 0 9 199 8 7 154 11 267 38 chain 88583 chr13 115169878 + 35572155 35573218 MER11C 1089 - 16 1089 40153 140 2 1 30 0 3 299 0 1 202 2 1 34 1 0 41 0 4 92 0 5 220 chain 25466 chr13 115169878 + 35576745 35577092 HSMAR1 1287 - 2 350 102374 109 1 0 37 26 28 174 chain 125093 chr13 115169878 + 35656064 35657497 L1PA4 6152 - 9 1443 29307 138 4 5 108 1 0 1007 0 1 175 chain 258847 chr13 115169878 + 35657497 35660422 L1PA4 6152 + 1737 4695 15756 179 0 1 259 0 32 148 0 1 425 6 0 1158 0 1 415 0 4 335 chain 129091 chr13 115169878 + 35662811 35664201 L1PA2 6032 + 4633 6023 28294 1390 chain 14859 chr13 115169878 + 35684193 35684351 L1HS 6032 - 1 159 141758 158 chain 43938 chr13 115169878 + 35696364 35696854 L1PA5 6144 + 5641 6131 64277 490 chain 13554 chr13 115169878 + 35702222 35702382 L1PA3long 6157 + 5997 6157 146155 160 chain 16471 chr13 115169878 + 35703130 35703349 L1PA4 6152 + 5894 6143 137005 48 23 53 148 chain 65666 chr13 115169878 + 35754864 35755907 L1PB1 5432 - 41 1064 50261 21 1 0 24 7 5 13 4 1 15 30 16 16 1 0 24 0 3 16 1 0 16 3 6 18 4 0 29 2 0 9 6 2 14 7 5 16 13 6 9 1 4 168 4 7 113 0 8 98 0 1 7 3 0 66 3 6 261 chain 24995 chr13 115169878 + 35778398 35778756 THE1A 353 - 0 353 104820 52 7 6 59 2 3 123 1 0 22 11 7 81 chain 403546 chr13 115169878 + 35844560 35849676 L1P2 5180 + 65 5178 9983 85 1 0 3 5 0 8 0 5 28 1 0 50 16 15 51 9 10 126 19 0 69 1 0 48 6 5 50 2 1 167 1 16 378 0 3 645 0 1 537 1 0 68 0 3 112 0 1 483 7 0 109 2 1 46 2 0 333 1 0 175 0 2 17 0 1 11 6 5 570 0 1 43 5 13 281 2 1 164 5 0 11 0 5 110 0 4 81 1 0 73 1 0 46 1 0 38 1 0 4 chain 12120 chr13 115169878 + 35850001 35850148 L1PA6 6164 + 6018 6162 151733 138 3 0 6 chain 3803 chr13 115169878 + 35858230 35858352 MER58B 340 + 215 339 210356 14 61 63 47 chain 7755 chr13 115169878 + 35869106 35869202 MER30B 195 - 16 113 172574 83 0 1 13 chain 56180 chr13 115169878 + 35875322 35876040 L1PA8 5853 - 0 715 55024 93 1 0 17 1 0 38 5 7 5 2 0 14 2 1 70 2 0 36 9 8 272 0 3 151 chain 528714 chr13 115169878 + 35890258 35896705 L1PA7 6471 - 11 6459 4335 18 1 2 119 7 0 7 0 7 52 0 1 116 5 4 506 8 6 284 0 7 140 1 0 464 1 6 893 5 0 15 5 9 173 0 1 106 0 1 26 1 0 81 0 4 168 0 1 143 0 4 193 0 2 260 1 0 171 1 0 120 2 1 277 0 1 312 0 1 64 0 4 124 6 5 165 0 3 389 2 0 890 23 0 102 chain 48072 chr13 115169878 + 35897320 35897861 L1PA3long 6157 + 5616 6156 60427 208 1 0 190 0 1 137 1 0 4 chain 83578 chr13 115169878 + 35907977 35909636 L1MA2 4263 - 149 1495 42084 10 1 0 46 7 0 76 96 94 45 15 14 23 3 0 53 9 10 38 310 0 43 1 0 74 7 4 95 13 14 312 2 16 211 29 28 140 chain 11803 chr13 115169878 + 35910541 35910810 L1PA15 4387 + 4044 4302 153025 22 47 46 19 1 0 53 2 1 23 4 0 7 10 9 43 6 3 32 chain 3890 chr13 115169878 + 35922776 35922819 MER53 195 - 130 173 209023 43 chain 3918 chr13 115169878 + 35947471 35947527 Tigger2a 444 - 146 203 208581 13 1 2 42 chain 16128 chr13 115169878 + 35973410 35973728 THE1D 372 - 12 343 137973 20 8 7 17 1 0 30 2 3 37 2 8 44 4 7 55 51 56 47 chain 120533 chr13 115169878 + 35977573 35978900 L1PA3long 6157 + 4827 6157 30867 483 0 4 69 0 1 99 2 0 674 chain 14629 chr13 115169878 + 35980480 35980747 L1PB1 5432 - 24 269 142491 4 1 0 12 1 0 23 1 0 23 2 0 14 1 0 5 2 0 19 22 12 7 0 1 7 1 0 45 1 0 15 2 1 52 2 0 5 chain 33106 chr13 115169878 + 35981823 35982313 L1PA13 3608 + 3047 3518 79044 40 1 0 45 1 0 28 1 0 113 2 0 63 1 0 60 2 0 48 8 4 18 1 0 26 1 0 12 5 0 14 chain 348215 chr13 115169878 + 35988370 35992401 L1PA5 6144 - 1 4026 11660 673 2 0 1450 6 24 10 28 0 45 0 9 251 1 0 172 0 1 395 0 1 262 1 2 32 1 0 166 0 1 192 12 7 332 chain 16846 chr13 115169878 + 35993049 35993318 Tigger4b 360 - 57 360 136000 67 10 13 8 2 0 28 0 3 39 22 45 59 0 7 34 chain 330742 chr13 115169878 + 35996287 36000000 L1PA4 6152 - 1 3719 12174 616 0 1 466 1 0 894 6 7 228 0 1 429 2 1 118 0 2 63 0 1 204 0 1 686 chain 211508 chr13 115169878 + 36000000 36002412 L1P1 4361 - 1934 4360 18398 605 0 2 405 0 5 29 1 9 798 1 0 573 chain 11042 chr13 115169878 + 36013751 36013877 L1PA5 6144 + 6017 6143 156046 126 chain 57400 chr13 115169878 + 36019973 36020622 L1PA5 6144 - 18 667 54286 132 13 13 504 chain 11041 chr13 115169878 + 36066206 36066471 L1PB1 5432 + 5180 5427 156051 40 2 1 15 1 0 41 91 72 21 0 7 14 1 0 13 1 0 18 2 0 5 chain 26601 chr13 115169878 + 36133770 36134090 AluY 311 + 0 305 97650 190 15 0 115 chain 38921 chr13 115169878 + 36155265 36155684 L1PA2 6032 - 508 927 70840 419 chain 31351 chr13 115169878 + 36155685 36156034 L1PA2 6032 + 5684 6032 81897 335 1 0 13 chain 7736 chr13 115169878 + 36193395 36193544 LTR32 486 - 0 151 172679 76 44 46 29 chain 17563 chr13 115169878 + 36211983 36212378 L1MB2 1706 + 1317 1694 134088 48 35 28 60 1 0 101 103 93 47 chain 18494 chr13 115169878 + 36224627 36224842 AluSg4 309 + 69 284 131516 215 chain 12194 chr13 115169878 + 36226341 36226485 L1PA6 6164 + 6014 6162 151445 135 0 4 9 chain 41510 chr13 115169878 + 36263326 36264169 MLT2A2 560 + 0 560 67267 6 0 1 10 0 2 184 0 1 52 5 4 74 1 0 24 0 12 144 297 0 46 chain 26208 chr13 115169878 + 36281990 36282371 THE1C 375 + 0 375 99168 118 4 2 58 11 9 161 13 11 16 chain 4397 chr13 115169878 + 36282634 36282786 MER53 195 - 27 195 201970 37 68 74 24 9 19 14 chain 18351 chr13 115169878 + 36309080 36309478 MSTD 398 - 0 398 131932 61 13 14 31 10 11 22 1 4 27 103 98 130 chain 30893 chr13 115169878 + 36313198 36313601 MLT2A1 477 + 0 395 82693 140 0 1 28 1 5 8 0 4 185 17 0 24 chain 24395 chr13 115169878 + 36314143 36314501 THE1B 368 + 0 368 108105 172 1 0 26 1 0 4 32 43 41 5 6 76 chain 4500 chr13 115169878 + 36314501 36314570 MER72 723 + 243 314 200778 7 1 0 11 4 7 46 chain 40043 chr13 115169878 + 36315328 36316462 MER41A 554 - 0 554 69257 122 1 2 14 16 17 135 587 0 171 0 1 36 0 4 52 chain 4351 chr13 115169878 + 36317916 36317971 MER4D 903 + 142 196 202573 4 1 0 50 chain 45756 chr13 115169878 + 36317971 36318521 MER41A 554 - 0 554 62269 80 0 5 458 1 0 11 chain 4561 chr13 115169878 + 36322011 36322069 LTR31 607 - 38 96 200096 58 chain 27996 chr13 115169878 + 36325439 36325947 L1PB1 5432 + 4901 5391 93009 202 1 2 10 3 0 8 0 12 11 1 0 12 15 9 40 0 1 4 11 9 11 5 4 39 6 5 16 1 0 4 2 0 7 10 1 19 2 0 4 1 0 12 11 9 18 1 0 21 chain 4554 chr13 115169878 + 36432799 36432862 MADE1 96 - 16 96 200175 29 1 18 33 chain 13557 chr13 115169878 + 36452690 36452898 L1MA3 4352 + 4105 4324 146146 7 1 0 68 1 0 37 0 18 25 2 0 22 8 6 27 1 0 9 chain 119341 chr13 115169878 + 36506953 36508474 THE1B-int 1605 - 9 1605 31285 500 3 0 310 8 9 325 1 32 136 0 2 20 0 1 82 0 40 29 0 3 107 chain 23267 chr13 115169878 + 36508474 36508849 THE1B 368 - 0 368 114354 20 0 1 54 1 0 101 30 23 31 31 32 58 0 1 34 2 0 13 chain 118667 chr13 115169878 + 36540644 36541975 SVA_B 1603 + 0 1598 31545 24 1 25 630 0 40 59 0 204 498 1 0 118 chain 14818 chr13 115169878 + 36543963 36544202 MLT1A0 366 + 83 350 141888 19 0 1 74 0 13 13 40 54 93 chain 32984 chr13 115169878 + 36579863 36580312 L1PA8 5853 + 5405 5847 79241 159 1 0 46 2 0 68 2 1 6 8 0 8 9 16 31 2 1 19 1 0 87 chain 556125 chr13 115169878 + 36582366 36588368 L1PA2 6032 - 7 6028 710 5741 0 20 147 1 0 113 chain 4376 chr13 115169878 + 36630033 36630083 L1PA2 6032 - 679 729 202240 50 chain 63463 chr13 115169878 + 36630083 36630768 L1PA2 6032 + 5349 6032 51258 670 2 0 13 chain 23080 chr13 115169878 + 36638528 36638808 AluSc5 308 + 13 291 115247 265 3 1 12 chain 6042 chr13 115169878 + 36639746 36639818 tRNA-Gln-CAA_ 72 - 0 72 184880 72 chain 90443 chr13 115169878 + 36640722 36641705 L1PA3long 6157 + 5174 6157 39489 983 chain 65019 chr13 115169878 + 36660611 36661415 L1PA8 5853 - 6 808 50565 87 1 0 19 2 1 44 10 11 6 1 0 71 2 0 46 1 0 334 0 5 50 4 0 89 0 2 37 chain 8546 chr13 115169878 + 36665388 36665500 L1PA8 5853 + 5741 5853 168039 19 2 1 39 0 1 52 chain 28884 chr13 115169878 + 36666615 36666922 AluYa5 310 - 3 310 89519 307 chain 15616 chr13 115169878 + 36694494 36694686 Tigger3a 397 + 139 335 139532 40 0 4 152 chain 92884 chr13 115169878 + 36723737 36725193 L1PB1 5432 + 4002 5422 38691 25 0 10 8 22 12 296 1 2 87 12 5 4 0 1 98 1 0 15 3 5 58 3 0 159 7 12 53 3 1 250 1 2 8 4 1 24 2 1 5 1 0 16 19 13 35 1 0 12 2 1 12 8 7 41 1 0 15 1 0 4 2 0 9 7 0 13 30 25 23 11 10 11 1 0 13 1 0 18 chain 28620 chr13 115169878 + 36758905 36759291 L1PA8 5853 - 3 380 90654 90 1 0 10 1 0 9 2 1 47 2 0 14 1 0 71 2 0 44 1 0 91 chain 28598 chr13 115169878 + 36793784 36794164 THE1C 375 + 0 373 90744 69 0 1 55 3 0 10 3 0 154 1 0 60 1 0 24 chain 64987 chr13 115169878 + 36841982 36842957 L1PB3 3668 + 102 1052 50579 10 6 0 13 4 2 10 3 0 66 24 0 24 0 4 82 6 10 402 25 25 98 0 1 90 0 4 35 2 0 61 1 0 13 chain 39594 chr13 115169878 + 36868711 36869174 LTR2 463 - 0 463 69895 463 chain 40802 chr13 115169878 + 36874159 36874752 PABL_A 660 - 0 660 68168 150 0 2 9 0 9 50 1 0 35 1 0 35 0 4 39 1 6 31 0 1 17 0 45 43 17 4 14 10 27 81 1 0 58 chain 38964 chr13 115169878 + 36890461 36890907 LTR7 482 + 0 482 70786 91 0 3 136 0 31 121 0 2 98 chain 297371 chr13 115169878 + 36890967 36894621 HERVH-int 3825 + 61 3825 13564 471 5 0 38 2 1 8 2 1 9 4 0 14 7 1 15 1 0 12 86 0 90 22 9 23 1 2 24 1 0 319 0 2 129 15 0 456 4 31 628 0 2 696 5 6 60 13 223 494 chain 2732 chr13 115169878 + 36891555 36891641 HERVH-int 3825 + 649 713 211203 8 0 20 6 2 0 15 2 1 7 39 0 7 chain 40787 chr13 115169878 + 36895877 36896328 LTR7 482 + 0 482 68193 264 0 31 187 chain 36062 chr13 115169878 + 36898830 36899267 LTR7 482 - 13 482 74815 175 0 31 214 11 12 37 chain 21313 chr13 115169878 + 36914257 36914512 AluY 311 + 40 295 122825 255 chain 27823 chr13 115169878 + 36930543 36930960 MER4E 760 + 344 760 93615 16 2 4 37 0 1 5 1 0 5 1 0 24 14 10 38 4 8 39 10 8 221 chain 25433 chr13 115169878 + 36946797 36947154 THE1B 368 + 0 368 102531 39 1 16 112 6 5 27 2 0 102 0 1 4 8 6 56 chain 57291 chr13 115169878 + 36967145 36968064 L1PA15 4387 - 31 932 54342 28 6 1 11 2 0 27 1 3 16 17 15 38 19 14 18 2 1 54 0 4 22 1 0 139 0 2 28 9 5 38 12 10 53 4 0 16 2 0 41 4 7 175 25 24 111 chain 48068 chr13 115169878 + 36973191 36973921 L1MA2 4263 - 162 866 60430 12 4 5 11 35 21 85 25 23 83 1 0 51 4 1 147 1 0 76 6 2 17 3 0 54 0 1 115 chain 13779 chr13 115169878 + 36977605 36977797 L1PA4 6152 + 5958 6152 145334 34 14 18 132 2 0 10 chain 160753 chr13 115169878 + 36987849 36990070 L1PA11 4918 + 2301 4511 23231 18 0 1 57 3 4 57 0 2 6 11 9 77 30 16 8 0 9 223 3 0 186 6 9 120 11 7 234 8 9 183 0 1 327 4 5 453 2 0 8 1 2 9 1 2 4 1 0 45 4 3 9 2 0 71 16 13 23 chain 47822 chr13 115169878 + 37000150 37000837 L1MA2 4263 + 3429 4100 60609 133 24 19 4 0 1 76 1 0 108 0 1 35 3 0 150 11 9 93 16 9 33 chain 532190 chr13 115169878 + 37042456 37048564 L1PA5 6144 - 12 6144 3941 130 0 1 313 0 1 148 0 6 905 1 0 256 0 1 630 0 1 58 3 0 591 0 4 249 6 10 878 0 1 682 1 6 5 0 1 177 0 1 131 0 1 221 0 1 723 chain 348554 chr13 115169878 + 37060350 37064163 L1PA3long 6157 - 15 3827 11649 842 1 0 2970 chain 24228 chr13 115169878 + 37074384 37074670 AluSp 311 - 25 311 109050 286 chain 11713 chr13 115169878 + 37129453 37129636 L1PA16 3655 - 535 722 153415 57 0 1 65 28 31 33 chain 5654 chr13 115169878 + 37174608 37174676 MER74A 558 - 477 547 188532 27 0 1 23 0 1 18 chain 26886 chr13 115169878 + 37191716 37192073 THE1B 368 + 0 368 96685 44 0 15 113 1 0 28 2 0 93 1 0 75 chain 3248 chr13 115169878 + 37197406 37197444 MIR 256 - 110 148 220038 38 chain 44077 chr13 115169878 + 37200665 37201215 MER41A 554 + 0 554 64129 406 1 5 143 chain 5760 chr13 115169878 + 37203473 37203540 MER34A 573 - 506 573 187554 67 chain 33325 chr13 115169878 + 37221682 37222165 MER1A 529 - 5 478 78696 51 31 29 359 19 11 23 chain 3011 chr13 115169878 + 37228509 37228541 L1MA6 2487 + 2339 2371 224789 32 chain 126459 chr13 115169878 + 37228660 37230180 L1PA7 6471 - 2 1518 28955 337 0 1 138 0 3 373 0 3 21 0 1 4 12 0 635 chain 23126 chr13 115169878 + 37281600 37281858 L1PA4 6152 - 9 268 115017 210 0 1 48 chain 64379 chr13 115169878 + 37281863 37282563 L1PA4 6152 + 5178 5878 50852 700 chain 4550 chr13 115169878 + 37302760 37302811 MADE1 96 + 45 96 200214 51 chain 7783 chr13 115169878 + 37336151 37336288 MER4D1 891 - 694 833 172400 72 27 28 20 0 1 18 chain 28018 chr13 115169878 + 37345332 37345652 L1PA7 6471 - 7 327 92937 320 chain 24043 chr13 115169878 + 37345955 37346277 HSMAR2 1300 - 961 1299 110101 26 6 16 16 0 1 76 1 5 182 0 1 15 chain 16973 chr13 115169878 + 37370280 37370496 LTR71A 459 + 170 389 135661 29 2 4 20 0 1 165 chain 6367 chr13 115169878 + 37417503 37417570 AluYb8 318 - 6 73 182268 67 chain 23262 chr13 115169878 + 37433491 37433816 MER41A 554 + 42 372 114377 45 5 6 29 3 6 59 0 10 89 9 0 86 chain 8668 chr13 115169878 + 37438453 37438554 MER41B 635 + 0 101 167376 101 chain 2626 chr13 115169878 + 37438554 37438593 5S 121 - 34 73 204920 39 chain 4768 chr13 115169878 + 37504839 37505030 L1MA8 2339 + 2179 2333 197716 19 13 0 36 3 1 12 82 60 26 chain 2934 chr13 115169878 + 37517651 37517683 MSTA 426 + 257 289 226427 32 chain 24012 chr13 115169878 + 37520389 37520776 Tigger2 2703 - 1952 2371 110264 47 0 1 147 32 35 54 28 29 15 1 2 31 0 26 32 chain 9430 chr13 115169878 + 37530786 37530899 LTR17 781 + 255 367 163410 72 1 0 40 chain 37760 chr13 115169878 + 37530899 37531346 HERV17-int 4347 + 3909 4347 72476 95 10 1 342 chain 26287 chr13 115169878 + 37532789 37533118 LTR17 781 + 0 326 98870 61 1 0 118 1 0 49 1 0 98 chain 4026 chr13 115169878 + 37536926 37537007 MER33 330 + 42 141 206979 44 21 39 16 chain 124648 chr13 115169878 + 37626160 37627826 L1PA8 5853 + 4185 5853 29490 91 4 5 166 0 3 55 0 5 170 0 1 33 22 13 195 7 6 59 0 4 16 0 2 66 0 4 114 18 21 138 0 1 41 5 0 168 1 0 41 14 12 61 4 3 8 2 1 52 2 1 19 1 0 93 chain 265027 chr13 115169878 + 37627942 37630904 L1PA4 6152 + 3174 6143 15441 39 0 1 676 0 2 809 0 1 691 0 3 747 chain 4932 chr13 115169878 + 37636140 37636208 MLT1A-int 1186 - 305 372 195911 21 2 1 45 chain 32528 chr13 115169878 + 37660874 37661312 MLT2A1 477 - 0 477 79982 6 0 4 27 7 49 6 6 0 181 0 1 23 0 1 9 4 1 169 chain 3918 chr13 115169878 + 37686883 37687003 L1MC1 2226 - 37 138 208568 6 1 0 32 46 30 18 2 0 15 chain 24019 chr13 115169878 + 37690681 37690957 L1PA5 6144 - 0 276 110217 276 chain 9643 chr13 115169878 + 37707980 37708133 MER58A 224 - 12 175 162390 10 0 1 52 22 31 69 chain 70150 chr13 115169878 + 37714459 37715251 L1PA5 6144 - 0 795 48325 543 0 3 249 chain 556752 chr13 115169878 + 37724089 37730119 L1PA2 6032 - 0 6030 641 141 1 0 1356 0 1 4532 chain 20776 chr13 115169878 + 37737403 37737651 L1PA7 6471 + 6219 6467 124690 248 chain 19899 chr13 115169878 + 37740555 37740795 7SK 245 - 5 245 127484 240 chain 62129 chr13 115169878 + 37746196 37746937 LTR17 781 - 7 781 51840 24 0 22 60 0 9 307 0 3 22 1 0 327 chain 62558 chr13 115169878 + 37762259 37763204 L1PREC2 3366 + 1035 1968 51650 202 10 12 4 1 0 40 1 0 17 23 25 46 1 0 141 12 13 61 1 0 50 0 1 20 13 12 67 0 1 19 20 6 196 chain 6655 chr13 115169878 + 37773726 37773805 MSTA 426 + 347 426 180043 79 chain 101230 chr13 115169878 + 37779515 37780646 L1PA5 6144 + 5011 6142 36455 1131 chain 9198 chr13 115169878 + 37799337 37799437 L1PA4 6152 + 6039 6139 164561 100 chain 544521 chr13 115169878 + 37824477 37830512 L1PA3long 6157 + 0 6152 2140 103 7 0 49 0 1 623 0 128 1863 6 0 421 0 1 2963 chain 155535 chr13 115169878 + 37853757 37855533 SVA_D 2077 + 13 2070 23920 12 11 0 530 0 40 243 0 123 42 1 0 12 1 53 36 0 78 39 0 1 166 0 1 55 1 0 322 1 0 304 chain 22100 chr13 115169878 + 37981741 37982008 L1PA7 6471 + 6193 6459 119783 125 1 0 141 chain 6311 chr13 115169878 + 37999016 37999091 L1PA4 6152 + 6078 6152 182705 69 1 0 5 chain 97279 chr13 115169878 + 38035799 38036901 L1PA3long 6157 - 1 1122 37489 146 1 8 256 2 16 247 2 0 448 chain 20506 chr13 115169878 + 38045777 38046013 LTR12_ 688 - 0 236 125611 236 chain 54808 chr13 115169878 + 38046040 38046797 LTR12 884 - 27 884 55833 57 43 74 148 3 8 193 2 0 95 0 66 216 chain 77173 chr13 115169878 + 38076328 38077358 L1PA8 5853 + 4815 5853 44873 191 1 3 75 1 0 75 40 49 269 0 1 32 1 6 48 1 0 44 2 0 74 1 0 11 1 0 47 2 1 10 1 0 9 2 1 92 chain 73332 chr13 115169878 + 38081871 38082961 L1PB1 5432 + 4349 5424 46869 17 0 13 196 8 5 46 3 0 178 2 0 8 5 3 179 2 3 4 1 0 100 0 13 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 15 8 0 16 8 5 14 2 0 24 1 0 21 4 3 9 2 1 16 1 0 4 chain 3064 chr13 115169878 + 38131916 38131968 L1PA14 3548 + 3291 3343 223750 29 3 4 8 1 0 11 chain 38840 chr13 115169878 + 38132996 38133533 LTR3B_ 500 + 0 500 70965 113 6 2 41 5 6 142 7 0 103 0 2 20 29 0 71 chain 19653 chr13 115169878 + 38163482 38163709 L1PA4 6152 - 0 223 128241 6 4 0 217 chain 229317 chr13 115169878 + 38179917 38182648 L1PA7 6471 + 3731 6467 17335 218 0 1 71 0 2 14 0 3 447 0 1 464 1 0 67 1 0 225 1 0 33 1 2 342 1 0 515 5 6 325 chain 30408 chr13 115169878 + 38247084 38247433 L1PA5 6144 - 0 349 83669 349 chain 23941 chr13 115169878 + 38270117 38270472 THE1B 368 - 0 368 110678 58 1 5 48 44 55 4 1 0 30 1 0 168 chain 19862 chr13 115169878 + 38324793 38325020 L1PA7 6471 - 7 234 127614 227 chain 11498 chr13 115169878 + 38334779 38334946 MER30 238 + 36 222 154309 71 15 33 48 0 1 33 chain 9789 chr13 115169878 + 38336312 38336418 L1PA3long 6157 - 571 677 161659 106 chain 54966 chr13 115169878 + 38336418 38337014 L1PA3long 6157 + 5561 6157 55727 596 chain 14409 chr13 115169878 + 38337026 38337221 HUERS-P3b-int 2065 + 67 258 143185 27 4 0 4 0 1 5 1 0 154 chain 14140 chr13 115169878 + 38367435 38367592 L1PA4 6152 - 11 168 144072 157 chain 4786 chr13 115169878 + 38390309 38390370 L1PA14 3548 + 674 735 197510 61 chain 60626 chr13 115169878 + 38392362 38393096 L1PA7 6471 + 5734 6467 52510 579 18 18 127 1 0 9 chain 541341 chr13 115169878 + 38396414 38402434 L1PA3long 6157 - 0 6157 2614 148 0 5 1340 0 1 28 1 0 945 0 1 1981 0 1 674 0 1 128 8 136 614 1 2 152 chain 26793 chr13 115169878 + 38410048 38410403 THE1B 368 + 0 368 97004 44 8 23 102 1 0 23 2 0 60 0 1 115 chain 48326 chr13 115169878 + 38450040 38450598 LTR6B 557 + 0 557 60225 402 1 0 155 chain 20566 chr13 115169878 + 38474112 38474363 L1P1 4361 + 3845 4099 125409 110 0 1 71 0 2 70 chain 176388 chr13 115169878 + 38474751 38476802 L1PA6 6164 + 4109 6159 21315 367 3 4 1674 2 0 5 chain 38546 chr13 115169878 + 38492966 38493450 MER41A 554 + 0 508 71372 253 1 0 57 0 24 7 1 2 165 chain 31477 chr13 115169878 + 38521047 38521427 L1PA4 6152 - 0 363 81679 55 17 0 308 chain 69056 chr13 115169878 + 38526117 38527027 L1PA10 4194 - 33 914 48781 11 1 0 31 3 0 30 1 0 4 13 0 7 1 0 202 5 0 261 14 5 207 0 2 62 0 2 57 chain 9996 chr13 115169878 + 38540073 38540202 L1PA8 5853 - 0 127 160599 93 1 0 16 1 0 18 chain 28997 chr13 115169878 + 38543143 38543545 LTR7 482 - 0 482 88998 158 0 10 37 0 31 21 0 1 109 26 64 51 chain 310879 chr13 115169878 + 38544804 38548534 HERVH-int 3825 - 0 3701 12962 488 0 12 1023 0 1 561 0 2 892 0 3 64 0 1 9 6 9 57 13 12 35 29 25 16 82 12 13 4 0 10 1 0 10 1 0 39 5 0 163 0 35 209 chain 2928 chr13 115169878 + 38548038 38548079 HERVH-int 3825 - 3241 3280 179586 4 1 0 10 1 0 25 chain 7476 chr13 115169878 + 38548593 38548691 LTR7B 505 - 366 503 174298 30 1 40 67 chain 28350 chr13 115169878 + 38570294 38570594 AluYb8 318 - 18 318 91764 300 chain 7646 chr13 115169878 + 38572908 38573003 MER101 471 - 370 464 173256 87 1 0 7 chain 27125 chr13 115169878 + 38575376 38575687 L1PA7 6471 - 22 333 95846 311 chain 33496 chr13 115169878 + 38580053 38580526 L1PA10 4194 - 1256 1729 78416 205 1 0 24 0 3 8 3 0 42 0 1 25 2 0 6 7 8 61 16 17 73 chain 26584 chr13 115169878 + 38606506 38606784 AluYd8 298 - 20 298 97710 278 chain 245382 chr13 115169878 + 38612027 38614826 L1PA4 6152 - 9 4705 16493 387 4 0 230 1 3 215 0 4 423 6 5 248 0 1 215 0 1891 393 4 8 673 chain 20068 chr13 115169878 + 38616712 38616945 L1PA7 6471 - 12 245 126927 233 chain 543196 chr13 115169878 + 38639515 38645652 L1PA3long 6157 + 4 6157 2316 552 1 0 453 12 2 705 1 0 976 1 2 153 0 1 1823 1 0 42 0 4 75 15 15 272 0 1 39 0 1 610 2 16 256 1 8 147 chain 19195 chr13 115169878 + 38659420 38659763 THE1B 368 - 0 368 129539 76 10 9 40 42 52 10 0 1 4 1 0 93 3 4 14 6 21 44 chain 45374 chr13 115169878 + 38670935 38672054 PRIMA4_LTR 623 + 0 623 62628 83 19 18 87 4 0 6 1 2 118 1 0 63 494 2 5 0 1 238 chain 535227 chr13 115169878 + 38686275 38692318 L1PA3long 6157 + 0 6156 3565 152 0 1 151 1 0 60 1 7 401 10 134 171 6 7 154 0 1 663 24 0 3408 0 4 121 0 1 720 chain 26840 chr13 115169878 + 38704134 38704461 THE1B 368 + 0 327 96845 77 0 1 98 1 0 151 chain 25988 chr13 115169878 + 38710643 38710946 AluYk4 311 + 0 303 100064 303 chain 201058 chr13 115169878 + 38711600 38713866 L1PA5 6144 - 9 2285 19138 633 0 11 190 1 0 1442 chain 184049 chr13 115169878 + 38718898 38720950 L1PA3long 6157 - 1 2044 20586 1462 11 0 202 1 3 376 chain 3744 chr13 115169878 + 38726226 38726267 THE1B 368 - 1 42 211266 41 chain 117024 chr13 115169878 + 38726911 38728456 THE1B-int 1605 - 5 1578 32116 396 4 3 153 5 7 76 1 0 446 16 16 39 7 32 298 13 16 91 chain 29039 chr13 115169878 + 38735516 38735913 MLT2A1 477 + 0 397 88814 15 0 4 150 9 6 135 5 6 55 3 0 13 0 1 12 chain 48317 chr13 115169878 + 38745952 38746490 L1PA4 6152 - 9 547 60231 538 chain 13681 chr13 115169878 + 38750430 38750596 MER44C 733 - 209 375 145667 166 chain 80018 chr13 115169878 + 38785658 38786705 MER11A 1151 - 0 1151 43580 65 2 1 117 0 1 105 3 0 179 1 0 60 0 5 59 1 0 16 0 7 147 0 1 78 22 18 116 0 99 40 2 3 34 chain 41606 chr13 115169878 + 38787102 38787645 MLT2A2 560 + 0 556 67147 218 0 2 21 5 4 79 0 1 74 3 14 143 chain 34532 chr13 115169878 + 38788645 38789063 L1PA5 6144 + 5713 6132 76858 128 0 1 129 0 1 4 1 0 10 10 0 6 0 10 130 chain 13377 chr13 115169878 + 38795683 38795901 L1PA8 5853 + 5639 5853 146793 40 14 12 48 3 2 12 8 7 93 chain 189091 chr13 115169878 + 38840262 38844849 L1PA10 4194 + 597 3160 20136 26 0 9 49 15 14 489 0 1 65 5 6 31 17 19 174 2042 0 631 0 1 5 1 0 37 0 4 471 0 1 26 5 4 23 12 13 4 0 1 459 chain 23623 chr13 115169878 + 38841135 38841407 L1PA7 6471 - 1771 2047 112449 31 0 4 241 chain 138264 chr13 115169878 + 38841413 38843107 L1PA7 6471 + 4702 6420 26443 87 3 0 119 0 10 8 0 4 245 0 1 37 0 7 404 2 0 24 0 1 63 0 3 366 0 4 113 0 1 86 6 4 131 chain 294558 chr13 115169878 + 38846297 38850169 L1PA8 5853 + 1946 5853 13726 72 4 0 258 0 2 259 1 5 158 0 2 163 0 2 21 1 0 30 0 1 242 0 4 224 9 6 672 0 1 54 0 1 55 1 0 86 3 14 62 6 4 18 6 4 125 23 37 145 11 10 274 12 15 34 0 3 5 32 34 45 1 2 294 13 18 157 1 0 46 2 0 69 1 0 13 1 0 48 2 1 19 2 1 92 chain 252300 chr13 115169878 + 38853074 38856455 L1PA7 6471 + 3376 6465 16115 127 1 0 71 0 5 27 1 0 492 303 0 473 1 0 7 0 1 155 7 8 206 2 1 5 0 1 386 0 1 24 0 1 232 0 4 21 0 4 831 3 0 6 chain 135443 chr13 115169878 + 38861966 38863565 L1HS 6032 - 3656 5246 26931 178 1 0 56 1 3 943 19 8 67 0 1 334 chain 326542 chr13 115169878 + 38863565 38867205 L1PA3long 6157 + 2512 6157 12322 100 0 1 564 1 0 6 0 1 2126 0 4 843 chain 3872 chr13 115169878 + 38870008 38870055 L1MA9 1812 + 76 123 209272 47 chain 19276 chr13 115169878 + 38883875 38884271 MSTA 426 - 18 426 129300 90 2 16 9 6 0 51 54 50 30 53 61 101 chain 49085 chr13 115169878 + 38893858 38894436 LTR14C 587 - 0 587 59681 147 0 1 54 0 9 45 3 2 329 chain 9392 chr13 115169878 + 38894437 38894561 L1PA11 4918 - 1178 1303 163603 49 1 2 74 chain 49078 chr13 115169878 + 38908929 38909540 PABL_A 660 + 4 660 59688 234 0 44 229 0 1 148 chain 61158 chr13 115169878 + 38938028 38938706 SVA_B 1603 + 917 1597 52273 59 1 0 213 1 5 365 1 0 38 chain 118998 chr13 115169878 + 38943921 38945510 L1PB1 5432 - 1395 2985 31413 207 1 0 91 0 2 16 4 1 69 0 7 33 1 0 541 1 0 55 30 19 159 0 11 45 2 3 67 0 2 84 0 5 6 30 28 83 16 8 48 chain 94131 chr13 115169878 + 38945510 38946903 L1PB1 5432 + 4072 5420 38300 411 33 17 34 8 7 162 0 1 372 6 10 14 16 14 24 1 0 9 1 0 9 27 21 43 2 1 16 1 0 37 7 6 15 25 13 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 4607 chr13 115169878 + 38962087 38962141 L1MB2 1706 - 1160 1214 199535 54 chain 43960 chr13 115169878 + 38963587 38964182 L1PBa 3878 - 1285 1883 64251 95 17 19 19 1 0 100 0 1 174 7 8 182 chain 29171 chr13 115169878 + 38970160 38970468 AluYa5 310 + 0 307 88190 123 1 0 184 chain 62627 chr13 115169878 + 39007030 39007792 L1PA7 6471 - 6 769 51620 366 12 13 384 chain 103523 chr13 115169878 + 39007820 39009115 L1PA7 6471 + 4391 5672 35860 252 0 1 235 0 1 75 2 0 249 0 1 29 3 4 28 0 1 234 43 0 69 0 24 28 0 2 48 chain 4821 chr13 115169878 + 39010451 39010719 L1MB3 1562 - 159 438 197110 26 197 208 45 chain 131902 chr13 115169878 + 39045582 39047132 LTR12C 1709 - 0 1709 27656 165 1 0 108 0 1 186 1 0 21 0 4 107 2 0 6 1 0 115 0 159 837 chain 5199 chr13 115169878 + 39093950 39094013 MSTB 430 - 366 429 193028 63 chain 165459 chr13 115169878 + 39122837 39125683 L1MA1 4479 - 301 2806 22598 6 6 0 16 4 1 4 1 0 10 3 2 9 0 1 24 1 0 27 5 4 122 3 0 6 1 0 87 1 0 12 3 1 20 1 0 6 72 0 65 1 0 16 2 0 25 1 0 138 0 10 48 2 0 122 18 14 119 6 0 4 1 0 47 0 1 8 1 0 25 4 0 21 9 16 139 0 7 6 8 6 25 1 0 6 3 4 25 0 1 41 10 9 47 0 1 20 1 0 33 2 0 105 1 0 56 23 4 222 0 3 199 6 14 20 3 4 15 0 3 6 0 3 25 23 25 163 251 1 22 0 1 194 1 0 6 0 2 5 chain 28719 chr13 115169878 + 39154411 39154902 MLT2A1 477 - 0 457 90251 38 98 58 181 4 5 23 5 9 22 0 1 120 chain 13462 chr13 115169878 + 39160362 39160652 THE1D 372 - 65 370 146477 59 11 27 28 27 28 47 50 51 16 3 0 49 chain 66312 chr13 115169878 + 39167220 39168105 L1PA8 5853 - 0 872 49940 92 2 1 18 3 2 40 7 0 7 0 6 8 1 0 69 2 0 48 1 0 61 8 0 250 1 9 220 1 0 4 0 1 5 7 0 5 0 1 25 chain 23464 chr13 115169878 + 39218655 39218958 AluSc8 310 + 5 307 113300 127 0 3 142 0 2 11 6 0 17 chain 21746 chr13 115169878 + 39229057 39229320 AluSc5 308 + 25 294 121223 240 0 4 8 0 2 15 chain 21639 chr13 115169878 + 39302985 39303232 AluSp 311 - 25 272 121617 247 chain 13280 chr13 115169878 + 39324306 39324483 THE1B 368 + 0 179 147173 15 2 0 25 0 5 123 1 0 11 chain 19347 chr13 115169878 + 39353239 39353521 L1PA8 5853 + 5568 5844 129080 40 2 0 70 2 1 14 9 8 39 2 1 19 2 1 83 chain 4017 chr13 115169878 + 39380469 39380530 L1M2c 2366 - 262 321 207111 15 1 0 23 1 0 21 chain 14527 chr13 115169878 + 39429718 39430009 L1PB1 5432 + 5159 5424 142802 9 2 0 52 2 1 15 1 0 45 23 19 14 12 3 10 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 6 chain 14478 chr13 115169878 + 39440656 39440822 AluSp 311 + 133 300 142956 71 1 2 94 chain 8754 chr13 115169878 + 39513548 39513657 MLT1A0 366 + 221 330 166897 109 chain 558293 chr13 115169878 + 39574954 39581012 L1PA2 6032 - 3 6030 473 1048 29 0 363 2 0 452 0 2 1032 1 0 960 1 0 2170 chain 25422 chr13 115169878 + 39620185 39620470 AluYc3 301 + 1 286 102587 285 chain 40542 chr13 115169878 + 39627000 39627548 MLT2A2 560 + 0 560 68530 183 16 15 208 0 11 52 1 0 21 0 3 67 chain 155637 chr13 115169878 + 39658246 39660530 MER41-int 2638 + 365 2636 23901 57 0 3 28 2 0 6 1 0 78 12 14 32 6 15 94 6 0 5 45 0 110 1 15 129 1 0 82 1 0 10 0 12 10 13 1 8 0 1 17 6 9 83 1 0 4 0 1 22 2 3 17 6 8 84 0 1 24 0 2 25 1 0 5 0 1 293 34 33 169 2 0 146 2 0 5 0 1 4 0 1 47 0 3 12 5 0 17 6 15 181 6 15 6 9 0 19 0 2 148 1 0 138 chain 37210 chr13 115169878 + 39660557 39661095 MER41B 635 + 10 547 73227 47 5 0 66 3 4 283 6 9 37 28 27 26 3 4 34 chain 26126 chr13 115169878 + 39671603 39671975 THE1C 375 - 0 375 99501 25 1 0 71 2 0 39 2 0 12 1 4 59 0 1 25 11 14 66 0 1 58 chain 271915 chr13 115169878 + 39689565 39693311 L1PA10 4194 - 33 3797 15089 10 1 0 34 3 0 29 5 6 234 0 1 4 2 0 220 2 0 69 1 8 153 5 6 254 0 4 28 1 4 112 9 29 215 79 78 14 0 1 418 0 2 123 1 4 59 0 3 12 0 1 147 0 1 79 1 2 26 5 4 59 4 0 172 1 0 248 26 26 167 0 1 7 5 6 84 2 0 111 1 0 36 0 12 304 24 0 33 31 29 69 1 0 6 chain 6539 chr13 115169878 + 39695760 39695861 Charlie2b 853 - 680 777 180934 28 10 6 63 chain 3991 chr13 115169878 + 39696141 39696192 MER45A 178 + 94 145 207516 51 chain 29022 chr13 115169878 + 39712474 39712778 AluYb8 318 + 0 304 88896 304 chain 29530 chr13 115169878 + 39712783 39713107 L1PA5 6144 - 490 814 86528 324 chain 44362 chr13 115169878 + 39713107 39713601 L1PA5 6144 + 5649 6143 63741 494 chain 60311 chr13 115169878 + 39715089 39715800 L1PA7 6471 - 18 734 52676 321 0 1 74 0 1 66 0 3 250 chain 100126 chr13 115169878 + 39715800 39717921 L1P3 4156 + 2773 4056 36739 320 0 4 81 0 1 304 866 0 65 0 4 82 0 15 88 4 1 66 5 9 219 0 3 21 chain 7720 chr13 115169878 + 39717282 39717370 L1P3 4156 + 3394 3483 172787 51 0 1 37 chain 8979 chr13 115169878 + 39719573 39719901 LTR23-int 503 - 27 353 165721 46 21 20 18 10 0 10 15 19 14 9 10 5 1 0 11 58 63 37 9 7 15 19 21 30 chain 79611 chr13 115169878 + 39762458 39763796 L1PA7 6471 - 3 1029 43772 8 4 0 137 9 10 216 322 0 397 0 2 74 0 2 35 7 9 67 0 2 33 1 6 28 chain 15391 chr13 115169878 + 39773708 39773979 Tigger3b 1229 + 709 992 140230 56 0 2 4 1 0 80 0 10 21 1 0 33 55 57 20 chain 207884 chr13 115169878 + 39780472 39782941 L1PA7 6471 - 17 2488 18650 346 6 0 408 0 2 70 1 5 80 1 0 4 0 1 552 17 17 144 1 0 419 0 1 405 0 2 15 chain 145511 chr13 115169878 + 39795805 39797860 L1PA11 4918 + 2568 4578 25253 21 1 0 276 57 5 156 2 1 34 0 3 30 0 1 83 0 1 29 0 8 214 0 2 234 4 0 198 0 2 168 0 1 90 3 2 58 0 5 8 7 6 127 16 29 33 2 1 13 2 0 7 0 1 59 2 0 14 1 0 11 1 0 8 45 32 28 2 0 11 chain 3103 chr13 115169878 + 39796116 39796153 L1PA11 4918 + 2872 2909 222874 37 chain 14840 chr13 115169878 + 39800864 39801073 L1PA8 5853 + 5648 5853 141809 34 1 0 6 8 7 45 2 1 19 1 0 93 chain 27721 chr13 115169878 + 39805879 39806264 MLT2A1 477 - 94 477 93966 106 7 6 67 0 1 6 2 1 5 0 1 8 0 1 11 4 1 169 chain 235254 chr13 115169878 + 39811486 39814494 L1P2 5180 - 1333 4363 17013 165 1 3 776 0 1 58 1 0 62 10 11 171 21 25 256 1 0 316 0 2 35 1 0 103 0 12 289 2 1 317 9 10 151 9 12 22 1 0 4 4 5 223 chain 5296 chr13 115169878 + 39834267 39834332 MER4E1 777 + 711 777 192061 40 0 1 25 chain 21121 chr13 115169878 + 39860901 39861200 L1PREC2 3366 + 400 694 123485 36 2 1 14 12 8 235 chain 16105 chr13 115169878 + 39863244 39863564 THE1C 375 - 44 357 138041 82 26 22 45 13 14 29 16 21 9 1 0 23 15 16 21 9 0 31 chain 115444 chr13 115169878 + 39869929 39871453 THE1D-int 1627 + 0 1616 32628 46 1 0 62 12 4 232 0 102 157 2 1 47 2 1 197 0 1 222 0 1 177 0 1 229 7 8 5 2 0 20 1 0 5 0 1 58 2 1 38 chain 50165 chr13 115169878 + 39879943 39880538 L1PA7 6471 + 5875 6466 58895 530 4 0 61 chain 255402 chr13 115169878 + 39905452 39908826 L1PA8 5853 + 2782 5849 15963 551 0 5 49 0 1 668 0 4 67 0 3 880 2 0 552 1 0 28 0 5 14 7 5 65 1 0 14 5 4 43 2 1 17 320 3 88 chain 6962 chr13 115169878 + 39938814 39938898 L1PA8 5853 - 9 93 177732 84 chain 38775 chr13 115169878 + 39947898 39948523 L1PA16 3655 + 2974 3591 71046 6 0 2 39 1 6 15 9 7 154 1 0 77 14 11 85 8 9 88 13 14 34 6 0 35 9 8 14 3 0 7 1 0 6 chain 24943 chr13 115169878 + 39954930 39955279 MER1A 529 + 174 523 105089 209 7 6 62 14 15 57 chain 6438 chr13 115169878 + 39970505 39970639 MLT1C 463 + 37 165 181724 68 4 5 14 30 23 18 chain 26291 chr13 115169878 + 39996895 39997276 THE1C 375 - 0 375 98859 25 1 0 62 0 2 5 2 0 177 31 27 23 2 1 53 chain 58283 chr13 115169878 + 40004699 40005420 LTR12 884 + 0 849 53819 24 1 0 31 0 107 194 0 22 471 chain 11324 chr13 115169878 + 40005455 40005580 LTR12_ 688 + 555 680 154987 125 chain 19346 chr13 115169878 + 40035265 40035603 L1PA15 4387 - 21 341 129086 10 1 0 27 7 3 11 9 7 33 11 8 46 6 5 9 4 0 22 1 0 55 1 0 26 1 0 58 chain 24620 chr13 115169878 + 40097424 40097704 AluYf4 310 + 0 304 106891 206 0 1 30 0 25 22 2 0 20 chain 253631 chr13 115169878 + 40166423 40169255 L1PA4 6152 + 3302 6142 16048 677 0 1 369 0 8 308 1 0 1477 chain 54793 chr13 115169878 + 40212897 40213615 MER4E 760 + 0 734 55848 22 0 2 100 0 7 21 21 24 91 1 2 96 1 3 240 0 1 125 chain 45179 chr13 115169878 + 40219051 40219597 L1PA8 5853 - 0 540 62843 93 1 0 19 2 1 61 1 0 68 2 0 47 1 0 251 chain 14997 chr13 115169878 + 40248212 40248377 L1PA5 6144 - 12 177 141327 165 chain 28156 chr13 115169878 + 40258380 40258686 AluYf4 310 - 5 310 92441 187 1 0 118 chain 15731 chr13 115169878 + 40278489 40278718 Tigger2a 444 - 127 367 139173 16 11 19 174 11 14 17 chain 45436 chr13 115169878 + 40288387 40289087 L1PB3 3668 + 2815 3566 62558 101 0 6 50 0 2 13 2 0 18 3 0 80 0 1 24 1 4 75 26 27 74 1 0 12 0 3 85 4 3 15 12 13 52 0 43 12 3 1 37 chain 433160 chr13 115169878 + 40315339 40320378 L1PA6 6164 + 1092 6162 9233 333 0 4 405 1 2 496 1 2 672 0 1 182 1 2 339 1 0 75 0 2 818 1 0 205 0 6 7 2 0 244 0 11 417 1 9 89 4 0 208 3 8 385 4 5 45 5 4 83 1 0 11 chain 7729 chr13 115169878 + 40359557 40359647 HY4 93 - 3 93 172715 90 chain 41400 chr13 115169878 + 40363506 40364064 LTR10F 562 + 0 562 67414 231 14 0 15 0 16 90 0 1 145 3 2 50 0 2 10 chain 20840 chr13 115169878 + 40366432 40366748 Tigger2 2703 - 54 394 124488 15 1 0 6 1 2 39 2 3 12 2 4 10 0 1 83 0 1 98 11 12 26 0 18 10 chain 45059 chr13 115169878 + 40373018 40373514 L1PA4 6152 - 1 497 62978 496 chain 40057 chr13 115169878 + 40373514 40373963 L1PA4 6152 + 5149 5604 69237 157 1 5 69 0 2 222 chain 40341 chr13 115169878 + 40377490 40378009 MER41A 554 + 30 554 68820 438 8 13 73 chain 39559 chr13 115169878 + 40379457 40379982 MER41A 554 - 5 552 69949 118 9 8 25 0 19 40 1 0 265 0 5 67 chain 18865 chr13 115169878 + 40381210 40381702 L1PB1 5432 + 5016 5422 130476 36 22 0 51 55 11 16 5 4 12 1 0 12 5 1 9 2 0 22 0 5 25 18 16 44 1 0 16 68 57 17 1 0 21 1 0 13 1 0 18 chain 524066 chr13 115169878 + 40422423 40428541 L1PA5 6144 - 12 6144 4760 736 4 0 77 0 1 19 0 5 22 2 1 790 0 2 131 1 5 306 1 0 1088 2 1 218 7 0 416 0 1 1144 15 6 281 0 1 138 9 18 576 0 14 135 chain 74035 chr13 115169878 + 40506313 40507181 L1PA6 6164 + 5294 6162 46491 539 0 1 319 1 0 9 chain 48109 chr13 115169878 + 40510133 40510670 L1PA4 6152 + 5609 6146 60394 537 chain 67628 chr13 115169878 + 40532967 40533748 L1PA3long 6157 - 13 792 49395 135 0 5 106 8 0 59 7 8 466 chain 115784 chr13 115169878 + 40560569 40561812 L1HS 6032 - 0 1243 32532 1243 chain 67070 chr13 115169878 + 40564003 40564844 L1P2 5180 - 2842 4173 49553 130 0 2 77 0 1 258 0 478 52 1 0 107 7 8 43 4 13 162 chain 87486 chr13 115169878 + 40564844 40565843 L1PA5 6144 + 5137 6142 40571 6 0 1 663 1 0 174 0 7 44 1 0 110 chain 177780 chr13 115169878 + 40578600 40580550 L1PA3long 6157 - 4 1958 21183 841 0 5 146 2 1 961 chain 33568 chr13 115169878 + 40615073 40615606 LTR12_ 688 + 0 561 78291 142 3 4 102 2 1 136 0 103 43 81 6 24 chain 17119 chr13 115169878 + 40640659 40640884 MLT2A2 560 - 334 560 135260 18 16 17 191 chain 29523 chr13 115169878 + 40660495 40660805 AluYg6 310 - 0 310 86555 310 chain 3240 chr13 115169878 + 40703831 40703868 MER51A 677 - 441 478 220227 37 chain 14482 chr13 115169878 + 40721620 40721823 L1PA8 5853 + 5655 5853 142940 23 2 1 11 2 0 50 2 1 19 1 0 93 chain 3821 chr13 115169878 + 40737216 40737260 MLT2A2 560 + 516 560 210081 44 chain 7122 chr13 115169878 + 40774156 40774245 MER5A1 166 + 26 115 176609 89 chain 7811 chr13 115169878 + 40800963 40801067 HY3 101 + 0 100 172239 9 4 0 91 chain 6245 chr13 115169878 + 40806199 40806278 MER3 215 - 46 127 183203 63 0 2 16 chain 2485 chr13 115169878 + 40832857 40832934 L1MC 810 - 121 199 233261 18 2 0 6 7 9 13 15 16 16 chain 7153 chr13 115169878 + 40839063 40839156 L1MB2 1706 - 16 108 176386 79 1 0 13 chain 96814 chr13 115169878 + 40855446 40856622 HERVL-int 5654 - 4472 5654 37605 129 11 14 390 0 1 302 0 3 238 2 1 104 chain 29705 chr13 115169878 + 40856622 40857111 MLT2A1 477 - 0 473 85810 42 76 52 34 25 31 148 10 7 125 0 5 29 chain 2468 chr13 115169878 + 40862882 40862927 MER96B 391 - 119 165 233500 23 5 6 17 chain 25078 chr13 115169878 + 40872989 40873456 L1PB1 5432 - 9 441 104418 19 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 26 14 14 1 0 43 1 0 16 5 4 49 2 0 9 2 0 3 2 0 10 1 0 8 1 0 23 5 0 9 2 3 112 chain 191236 chr13 115169878 + 40873474 40875910 L1PBa 3878 - 1182 3615 19939 114 0 1 4 0 1 287 6 4 41 0 1 552 0 2 68 1 0 7 3 0 295 1 4 326 17 10 6 1 0 158 1 5 285 2 1 261 chain 28794 chr13 115169878 + 40891309 40891625 AluYg6 310 - 0 310 89929 187 6 0 123 chain 4080 chr13 115169878 + 40894531 40894575 MLT1J1 437 - 340 384 206194 44 chain 22416 chr13 115169878 + 40900729 40901011 AluSp 311 - 11 298 118402 214 9 14 59 chain 36140 chr13 115169878 + 40904927 40905423 LTR10F 562 - 8 562 74721 53 0 1 42 0 1 179 3 0 12 21 0 10 2 26 38 0 56 136 chain 3044 chr13 115169878 + 40907949 40908012 L1MA8 2339 + 2202 2262 224118 29 8 6 20 1 0 5 chain 12426 chr13 115169878 + 40909624 40909766 L1PA4 6152 - 325 467 150544 142 chain 28925 chr13 115169878 + 40909776 40910108 L1PA5 6144 + 5805 6137 89347 86 1 0 52 0 1 193 chain 9903 chr13 115169878 + 40913832 40913980 L1PA8 5853 + 5660 5804 161053 22 8 6 52 2 1 19 1 0 44 chain 554965 chr13 115169878 + 40930427 40936458 L1PA2 6032 + 2 6032 830 254 1 0 5776 chain 25965 chr13 115169878 + 40947702 40948049 THE1C 375 - 0 375 100155 26 1 0 10 0 1 33 0 1 45 9 30 16 7 12 20 0 1 180 chain 17302 chr13 115169878 + 40952444 40952770 MSTA 426 + 67 411 134782 38 25 43 11 41 41 4 1 0 48 10 11 148 chain 4287 chr13 115169878 + 40962526 40962575 MER96B 391 + 70 119 203392 49 chain 38362 chr13 115169878 + 40967205 40967715 L1PA8 5853 + 5351 5853 71627 213 1 0 46 2 0 68 12 10 52 2 1 19 1 0 15 18 17 61 chain 31875 chr13 115169878 + 40969768 40970225 MER1A 529 - 7 485 81056 20 0 13 20 10 12 259 8 13 42 16 17 82 chain 3258 chr13 115169878 + 40970662 40970813 MER6B 211 - 34 178 219801 17 1 0 15 97 91 21 chain 314015 chr13 115169878 + 40989857 40993522 L1PA6 6164 + 2482 6162 12855 403 0 1 303 0 2 6 1 0 30 0 1 295 1 0 169 5 6 554 13 0 160 0 2 265 0 1 59 0 1 324 2 23 228 5 8 828 3 0 11 chain 25167 chr13 115169878 + 40998852 40999129 AluYk4 311 + 11 288 103926 277 chain 13034 chr13 115169878 + 41037362 41037635 L1PB1 5432 - 8 265 148107 4 1 0 16 1 0 9 1 4 21 1 0 11 6 6 7 2 0 10 12 9 14 5 0 17 3 0 15 1 0 40 21 19 55 chain 15062 chr13 115169878 + 41040319 41040544 MER30 238 - 0 238 141132 48 3 0 55 3 0 5 5 23 83 8 9 15 chain 3977 chr13 115169878 + 41047932 41047983 MER31A 484 - 0 52 207738 13 0 1 38 chain 11178 chr13 115169878 + 41072282 41072423 L1PA7 6471 - 1 152 155525 12 0 10 129 chain 16220 chr13 115169878 + 41119126 41119402 Tigger3b 1229 + 881 1157 137696 65 1 2 31 5 0 23 0 1 8 13 17 54 23 22 53 chain 31914 chr13 115169878 + 41125771 41126223 MER87B 500 + 0 465 80991 98 6 8 74 3 6 54 10 18 207 chain 16499 chr13 115169878 + 41145326 41145515 L1PA5 6144 + 5951 6140 136921 189 chain 4815 chr13 115169878 + 41221847 41221911 MER34C2 569 + 498 561 197177 23 1 0 40 chain 43878 chr13 115169878 + 41224044 41224602 MER41A 554 - 0 554 64361 156 1 2 87 4 0 305 1 0 4 chain 21063 chr13 115169878 + 41243163 41243413 AluY 311 + 40 303 123681 68 0 1 23 0 1 86 0 11 73 chain 29328 chr13 115169878 + 41262210 41262519 AluYa5 310 - 1 310 87400 309 chain 78543 chr13 115169878 + 41265042 41267436 L1PA16 3655 + 1845 3247 44245 5 0 2 153 6 0 228 5 0 216 0 4 70 9 5 113 1267 293 41 6 5 14 9 10 113 23 10 75 0 4 41 chain 27255 chr13 115169878 + 41273094 41273384 AluYc 301 + 0 290 95417 290 chain 2956 chr13 115169878 + 41278669 41278718 MSTB-int 1649 + 1596 1649 225968 11 6 10 32 chain 11548 chr13 115169878 + 41278718 41279040 MSTB 430 + 0 357 154107 97 1 0 4 13 31 19 5 7 27 124 140 32 chain 514805 chr13 115169878 + 41280890 41287448 L1PA7 6471 - 10 6471 5692 124 22 25 407 7 8 30 1 0 53 0 2 178 1 0 16 0 4 150 0 3 512 1 0 374 0 1 4 1 0 49 0 2 105 0 2 410 1 0 288 0 5 127 0 3 188 0 1 13 0 1 34 0 103 529 0 4 67 1 0 26 8 12 21 6 106 298 348 0 24 4 0 154 1 2 651 0 3 163 5 6 66 0 2 73 1 0 509 2 17 44 1 2 460 chain 549841 chr13 115169878 + 41309055 41315081 L1PA2 6032 + 0 6028 1470 257 1 0 70 0 3 2064 1 0 272 5 1 1151 0 1 1357 0 4 848 chain 38339 chr13 115169878 + 41317473 41318162 L1PA15 4387 + 3647 4326 71668 33 0 5 23 1 0 4 6 12 85 13 11 10 4 0 60 13 11 11 0 1 6 20 19 62 5 6 98 1 0 26 1 0 51 5 4 25 4 0 7 1 0 39 17 14 44 3 1 11 chain 19952 chr13 115169878 + 41343248 41343504 AluSx4 309 + 17 274 127297 188 1 0 5 0 1 24 3 4 35 chain 24113 chr13 115169878 + 41364733 41365011 AluSp 311 - 22 300 109679 182 1 0 5 0 1 90 chain 23581 chr13 115169878 + 41396689 41396972 AluSc5 308 - 10 298 112683 59 0 5 224 chain 8373 chr13 115169878 + 41397432 41397552 MER85 139 - 3 137 169008 34 3 13 34 0 4 49 chain 551637 chr13 115169878 + 41402955 41408962 L1PA2 6032 + 2 6019 1234 254 1 0 108 0 1 975 0 1 1797 0 4 2037 0 5 835 chain 357367 chr13 115169878 + 41411867 41416003 L1PA6 6164 + 2007 6162 11423 332 1 2 257 0 3 40 0 1 547 0 1 373 0 1 324 7 8 753 1 0 128 0 1 221 0 4 278 0 1 184 1 4 34 0 3 655 chain 542470 chr13 115169878 + 41438718 41444728 L1PA3long 6157 - 8 6153 2436 2673 0 1 220 1 0 72 1 0 492 0 1 201 0 1 161 0 1 1417 0 128 209 0 4 415 0 1 148 chain 27685 chr13 115169878 + 41446749 41447130 MLT2A1 477 + 0 385 94101 140 1 2 26 1 5 30 3 0 5 3 5 172 chain 78184 chr13 115169878 + 41447221 41448258 HERVL-int 5654 + 0 1050 44422 11 7 5 461 2 5 360 0 2 26 0 5 50 33 38 87 chain 30590 chr13 115169878 + 41448816 41449179 HERV1_LTRa 508 + 149 508 83220 323 4 0 36 chain 6980 chr13 115169878 + 41455418 41455497 HERVL-int 5654 + 1046 1125 177610 79 chain 2874 chr13 115169878 + 41455499 41455531 MSTB 430 + 325 357 227447 32 chain 483518 chr13 115169878 + 41461632 41467236 L1PA5 6144 + 3 6144 7609 83 0 523 5 0 2 49 1 2 498 15 6 133 11 10 72 0 1 806 0 2 119 0 1 160 0 1 406 1 0 210 0 1 27 0 17 7 5 0 1778 0 4 1218 chain 153326 chr13 115169878 + 41473905 41476040 SVA_D 2077 + 55 2071 24181 670 0 3 33 3 0 118 1 0 19 400 53 83 2 4 9 0 1 214 3 229 580 chain 18692 chr13 115169878 + 41474777 41474996 SVA_F 1814 + 1017 1284 130969 138 1 50 69 1 0 10 chain 3694 chr13 115169878 + 41475069 41475149 SVA_D 2077 + 1225 1305 80631 80 chain 48832 chr13 115169878 + 41476093 41476632 L1PA2 6032 - 3 542 59853 539 chain 22111 chr13 115169878 + 41500927 41501198 AluSp 311 + 40 311 119736 271 chain 8470 chr13 115169878 + 41505198 41505312 MLT1A1 405 + 281 393 168462 51 1 0 57 1 0 4 chain 174731 chr13 115169878 + 41528556 41530728 SVA_D 2077 + 12 2077 21506 13 5 0 535 0 40 124 0 3 34 3 0 150 0 36 86 3 5 29 0 1 433 176 0 334 0 1 142 6 0 99 chain 1960 chr13 115169878 + 41529971 41530002 SVA_D 2077 + 1149 1180 142766 31 chain 3450 chr13 115169878 + 41530033 41530147 SVA_D 2077 + 1036 1149 115602 7 1 0 106 chain 13237 chr13 115169878 + 41531668 41531880 MSTA 426 + 185 408 147330 15 23 18 18 2 0 60 1 21 57 2 0 34 chain 13774 chr13 115169878 + 41572367 41572671 Tigger3a 397 + 0 374 145353 18 58 122 15 8 14 80 0 1 64 31 30 30 chain 26090 chr13 115169878 + 41590772 41591079 AluSp 311 + 4 311 99662 307 chain 57128 chr13 115169878 + 41610607 41611243 L1PA5 6144 + 5501 6137 54445 636 chain 527645 chr13 115169878 + 41616444 41622550 L1PA5 6144 - 2 6141 4434 7 4 0 565 0 3 78 0 2 516 0 1 188 0 2 172 0 4 182 0 2 390 0 4 218 6 5 557 0 3 39 5 2 72 0 5 284 0 8 29 0 2 215 5 1 1150 0 2 34 0 5 485 1 0 181 1 2 247 6 7 279 1 2 189 chain 22267 chr13 115169878 + 41651150 41651480 L1PB4 2604 + 277 612 119043 12 0 6 85 1 0 14 10 9 67 0 2 9 0 3 24 0 4 77 8 0 23 chain 19650 chr13 115169878 + 41655070 41655307 AluSc 308 + 17 255 128247 60 0 1 177 chain 3883 chr13 115169878 + 41665893 41665948 L1MCa 1829 - 322 376 209126 6 0 1 16 2 0 31 chain 24223 chr13 115169878 + 41666877 41667168 AluY 311 + 11 298 109067 122 15 11 154 chain 104166 chr13 115169878 + 41670348 41672368 L1PA11 4918 - 414 1813 35701 16 2 1 15 2 0 78 2 1 43 626 0 96 1 0 112 16 19 207 0 1 85 3 7 72 6 7 41 11 7 99 6 7 13 0 3 32 0 1 4 1 0 72 0 1 359 chain 9152 chr13 115169878 + 41672394 41672511 MER50B 698 + 527 646 164802 14 1 0 34 0 2 55 0 1 13 chain 22737 chr13 115169878 + 41680254 41680549 AluSp 311 + 0 301 116884 43 8 14 244 chain 7708 chr13 115169878 + 41682694 41682788 MER52C 1267 + 1153 1246 172885 89 1 0 4 chain 10632 chr13 115169878 + 41700578 41700731 THE1B 368 + 217 368 157688 13 1 0 12 1 0 37 0 1 23 0 3 5 5 1 56 chain 26426 chr13 115169878 + 41710751 41711212 MSTB 430 + 0 430 98319 23 5 4 94 13 10 16 74 53 14 6 0 216 chain 14746 chr13 115169878 + 41712903 41713164 MER21A 919 + 663 919 142114 24 32 18 19 1 2 79 0 16 45 3 0 14 3 0 32 2 0 7 chain 23724 chr13 115169878 + 41729855 41730136 AluSp 311 - 8 290 111911 124 0 1 157 chain 44862 chr13 115169878 + 41734079 41734561 LTR7 482 + 0 482 63215 482 chain 5940 chr13 115169878 + 41736178 41736245 MER21-int 1364 + 60 127 185785 67 chain 87593 chr13 115169878 + 41749452 41750513 MER11B 1079 - 0 1079 40537 29 6 5 168 0 1 14 0 11 82 0 2 538 0 5 224 chain 4176 chr13 115169878 + 41755093 41755177 L1MD2 1676 + 1385 1471 204888 39 4 7 10 11 10 20 chain 3594 chr13 115169878 + 41775699 41775741 MSTC 436 + 365 407 213751 42 chain 4351 chr13 115169878 + 41780338 41780446 MSTC 436 + 190 319 202570 40 44 65 24 chain 229845 chr13 115169878 + 41781467 41785629 L1MA2 4263 - 419 4256 17315 38 3 0 92 11 14 45 1 0 70 1 5 6 8 0 633 0 1 19 17 18 128 1 0 82 5 10 35 6 4 21 30 12 9 0 14 31 3 1 59 0 3 267 5 0 26 8 0 147 2 1 77 9 2 119 5 8 73 22 6 229 3 0 27 1 0 6 0 4 232 0 1 4 2 1 110 0 4 38 1 3 31 0 5 21 4 1 41 4 2 55 5 5 35 73 31 90 150 2 94 4 0 15 0 3 56 613 508 41 0 4 47 1 0 15 chain 14600 chr13 115169878 + 41808317 41808604 AluJr4 308 - 13 298 142595 6 5 0 26 23 23 77 50 53 100 chain 5751 chr13 115169878 + 41817713 41817812 LTR40a 516 + 387 512 187631 11 2 0 6 10 38 70 chain 5227 chr13 115169878 + 41841292 41841610 L1MC5 759 - 42 368 192756 38 231 239 49 chain 16068 chr13 115169878 + 41843916 41844153 LTR8 732 + 0 269 138152 15 0 1 13 1 10 133 0 3 23 5 8 21 2 18 24 chain 30121 chr13 115169878 + 41847521 41848285 MER4A1 472 - 0 472 84425 187 360 68 42 4 5 93 1 0 77 chain 8888 chr13 115169878 + 41849929 41850056 MER75 514 + 380 514 166194 84 12 19 31 chain 13003 chr13 115169878 + 41853426 41853636 MER4B 649 + 212 421 148237 4 0 1 27 1 2 8 2 0 45 20 19 103 chain 59388 chr13 115169878 + 41853650 41854710 MER4E 760 + 0 755 53185 23 0 1 140 1 0 26 2 0 97 0 1 30 0 4 96 305 0 115 7 5 76 1 0 141 chain 91108 chr13 115169878 + 41862719 41864928 HSMAR1 1287 + 0 1286 39258 76 0 1 27 53 61 390 1 0 9 8 6 51 337 22 543 614 0 100 chain 21039 chr13 115169878 + 41874853 41875141 LTR23 429 - 139 429 123768 17 7 1 155 0 8 7 1 2 96 1 0 4 chain 4575 chr13 115169878 + 41912909 41912996 L1PB1 5432 - 2 83 199924 4 1 0 4 1 0 18 1 0 10 2 1 23 1 0 9 1 0 12 chain 33535 chr13 115169878 + 41914388 41914786 L1P1 4361 - 1141 1539 78339 43 1 0 155 0 1 199 chain 11827 chr13 115169878 + 41951433 41951655 MER47A 366 + 72 295 152918 24 67 68 131 chain 42531 chr13 115169878 + 41962006 41962558 MER41A 554 - 0 554 65978 124 2 3 333 7 8 86 chain 103708 chr13 115169878 + 41965778 41966979 L1PA6 6164 - 2 1203 35798 164 0 1 810 5 4 222 chain 29099 chr13 115169878 + 41984258 41984694 LTR7B 505 - 10 505 88555 41 14 13 82 1 0 79 10 12 12 20 31 12 0 38 60 0 10 105 chain 21268 chr13 115169878 + 41989996 41990358 THE1B 368 - 0 368 122964 56 7 6 47 0 1 18 7 16 10 7 12 10 24 15 51 8 6 6 0 3 111 chain 283471 chr13 115169878 + 41995537 41998778 HERVE-int 4064 - 793 4064 14436 662 1 0 399 2 0 244 1 0 430 11 12 425 1 0 82 0 36 170 4 1 202 0 1 607 chain 9801 chr13 115169878 + 42029874 42030032 LTR2C 499 + 328 480 161588 11 1 0 37 15 11 48 1 0 45 chain 7376 chr13 115169878 + 42046801 42046891 L1MB7 1623 - 478 575 174922 13 0 7 77 chain 25384 chr13 115169878 + 42047332 42048484 L1MA2 4263 - 150 1291 15938 8 1 0 32 29 26 82 9 7 37 0 2 6 4 1 37 1 0 69 3 0 126 16 18 14 8 1 7 0 11 44 5 1 17 2 0 148 11 10 193 0 1 243 chain 512328 chr13 115169878 + 42048492 42054869 L1PA7 6471 - 3 6466 5940 137 10 0 7 3 4 6 0 7 566 0 1 40 0 2 74 0 3 313 0 5 86 12 13 7 0 1 4 1 0 516 0 2 933 1 0 190 14 17 31 1 0 55 0 10 195 4 0 6 8 12 377 0 1 11 15 0 195 0 1 40 0 1 61 0 21 28 0 1 350 0 1 866 0 19 17 0 4 236 5 6 232 10 15 165 3 0 104 1 0 68 2 0 114 26 52 177 5 8 49 chain 89350 chr13 115169878 + 42054894 42058949 L1MA2 4263 - 1291 3841 15938 68 0 2 127 1 0 30 6 7 28 0 3 65 1 0 130 0 1 9 0 3 45 0 1 25 0 5 211 0 1 56 21 22 53 0 1 14 1199 0 84 0 4 15 3 0 188 1 0 202 1 0 224 336 21 168 0 1 42 0 1 64 0 1 215 1 0 201 0 1 25 15 6 120 1 0 60 chain 38750 chr13 115169878 + 42055793 42056292 L1PA7 6471 - 2 498 71079 8 6 0 96 0 1 38 12 14 339 chain 21819 chr13 115169878 + 42078112 42078476 THE1B 368 - 0 368 120948 26 36 36 66 1 0 10 1 0 14 3 7 9 1 0 4 0 4 14 3 4 10 2 0 164 chain 30698 chr13 115169878 + 42078740 42079299 L1PB1 5432 + 4883 5420 83042 131 0 2 87 1 2 9 3 0 24 1 0 7 2 1 10 6 2 9 2 0 45 0 10 15 9 8 37 1 0 14 2 0 6 18 6 19 8 5 13 18 16 9 1 0 19 6 5 13 1 0 13 chain 27496 chr13 115169878 + 42081077 42081451 THE1B 368 - 0 368 94663 40 8 0 155 2 1 125 5 10 24 2 0 13 chain 95465 chr13 115169878 + 42081456 42082787 THE1B-int 1605 - 5 1605 37968 151 50 49 53 2 0 5 0 2 44 0 3 330 2 3 248 24 284 24 8 5 34 1 4 58 0 1 126 1 0 5 0 1 11 0 3 17 4 6 133 chain 4980 chr13 115169878 + 42087229 42087285 MLT1A0 366 - 217 274 195370 9 0 1 47 chain 9801 chr13 115169878 + 42106857 42106971 L1PA5 6144 - 0 114 161586 114 chain 548551 chr13 115169878 + 42108887 42115004 L1PA4 6152 - 1 6141 1637 112 0 1 1102 2 0 584 0 4 1041 0 1 20 1 0 33 0 3 823 0 3 1848 1 0 434 0 14 20 4 5 92 chain 46693 chr13 115169878 + 42116962 42117592 LTR12 884 + 0 736 61462 26 1 0 36 4 111 205 2 0 230 40 42 86 chain 3613 chr13 115169878 + 42131319 42131496 L1MB7 1623 + 1248 1409 213434 18 6 2 12 43 37 5 1 0 16 46 41 30 chain 124316 chr13 115169878 + 42145533 42146946 SVA_B 1603 + 70 1603 29591 723 0 1 48 0 78 13 1 0 33 0 36 163 0 6 432 chain 61319 chr13 115169878 + 42148324 42149187 L1PB2 3958 + 2312 3838 52192 14 0 22 130 14 16 330 0 2 94 2 648 22 0 2 26 1 0 48 0 1 16 1 0 50 6 0 12 1 0 29 2 1 28 8 5 16 0 1 13 chain 27484 chr13 115169878 + 42155126 42155437 AluYf4 310 - 1 310 94701 191 2 0 118 chain 87058 chr13 115169878 + 42165658 42166619 L1PA3long 6157 + 5203 6157 40754 816 1 0 131 6 0 7 chain 4139 chr13 115169878 + 42190809 42190933 MER3 215 + 56 180 205368 22 42 36 31 8 14 21 chain 275140 chr13 115169878 + 42191631 42194779 L1PA6 6164 - 4 3175 14916 59 2 1 332 0 12 456 0 4 374 0 1 419 0 5 940 1 2 365 0 1 200 chain 94888 chr13 115169878 + 42199332 42200382 L1PA4 6152 + 5105 6152 38127 1041 3 0 6 chain 7617 chr13 115169878 + 42201439 42201549 MER51B 395 + 272 395 173432 22 6 19 82 chain 6502 chr13 115169878 + 42203290 42203371 L1PREC2 3366 + 2456 2537 181226 81 chain 126358 chr13 115169878 + 42210280 42211701 L1PA4 6152 + 4698 6143 28991 66 0 9 413 3 12 106 0 4 415 0 2 418 chain 28971 chr13 115169878 + 42231615 42231924 AluYb8 318 - 9 318 89131 309 chain 5031 chr13 115169878 + 42236269 42236467 L1MD2 1676 - 1444 1627 194814 16 99 98 47 4 0 15 10 0 7 chain 6752 chr13 115169878 + 42236827 42236908 L1PA4 6152 - 1 84 179306 75 0 2 6 chain 11210 chr13 115169878 + 42305030 42305158 L1PA3long 6157 + 6030 6157 155386 71 1 0 56 chain 22579 chr13 115169878 + 42319280 42319548 L1PA6 6164 - 2 270 117677 268 chain 148617 chr13 115169878 + 42321117 42322773 L1PA4 6152 - 1384 3040 24800 696 0 1 906 1 0 53 chain 118787 chr13 115169878 + 42322773 42324157 L1PA4 6152 + 4768 6139 31497 331 0 1 178 0 4 144 1 0 103 0 1 411 19 0 97 0 1 100 chain 21019 chr13 115169878 + 42328283 42328607 THE1B 368 + 7 368 123850 35 1 16 81 0 4 29 1 0 26 32 42 61 0 9 58 chain 52109 chr13 115169878 + 42328625 42329448 L1MA3 4352 - 26 813 57555 11 7 6 21 1 0 5 2 1 24 2 0 78 1 0 46 96 72 10 1 0 153 2 0 77 3 0 283 chain 5547 chr13 115169878 + 42331758 42331825 L1PA16 3655 - 82 149 189597 67 chain 25051 chr13 115169878 + 42344301 42344602 AluY 311 + 0 308 104537 72 0 6 31 4 5 194 chain 72602 chr13 115169878 + 42367981 42368903 L1PA11 4918 - 940 1870 47217 67 0 4 48 3 0 125 1 4 154 5 8 215 3 4 301 chain 37099 chr13 115169878 + 42368903 42369577 L1PA11 4918 + 3987 4626 73151 144 1 2 28 12 11 159 2 0 57 7 6 80 80 65 15 1 0 13 2 0 11 8 2 5 1 0 8 1 0 5 3 1 6 3 0 6 1 0 15 chain 24189 chr13 115169878 + 42377506 42377863 THE1B 368 - 0 368 109281 119 35 47 4 1 0 29 1 0 72 0 1 96 chain 5938 chr13 115169878 + 42382320 42382387 L1MA3 4352 + 2063 2130 185794 67 chain 26078 chr13 115169878 + 42403312 42403663 L1PB2 3958 + 3492 3838 99716 53 1 0 73 1 0 59 3 2 74 2 0 22 1 0 36 0 1 26 chain 123777 chr13 115169878 + 42412892 42414358 L1PA7 6471 - 259 1855 29782 585 0 7 270 7 104 137 0 22 407 0 4 60 chain 19081 chr13 115169878 + 42414367 42414611 L1PA7 6471 + 6226 6470 129876 28 0 3 60 1 0 50 4 0 89 0 2 12 chain 16477 chr13 115169878 + 42422528 42422849 THE1D 372 + 10 324 136989 5 3 0 41 40 32 78 48 51 100 0 1 6 chain 30370 chr13 115169878 + 42437112 42437508 MLT2A1 477 + 0 396 83740 142 0 1 26 1 5 150 1 0 60 5 1 11 chain 161358 chr13 115169878 + 42445440 42447214 L1PA3long 6157 - 0 1771 23139 5 3 0 1766 chain 137043 chr13 115169878 + 42447214 42448716 L1PA3long 6157 + 2889 4390 26546 288 2 1 1212 chain 127811 chr13 115169878 + 42455522 42456979 SVA_D 2077 - 311 2065 28615 27 0 10 104 0 1 131 0 189 250 1 138 83 1 0 26 39 0 795 chain 1425 chr13 115169878 + 42456145 42456184 SVA_D 2077 - 1190 1229 189163 39 chain 132289 chr13 115169878 + 42471704 42473280 LTR12C 1709 - 0 1709 27564 67 1 132 257 1 0 25 0 4 112 1 0 275 1 0 42 7 8 350 0 1 98 7 6 64 1 2 34 1 0 232 chain 7201 chr13 115169878 + 42479253 42479340 U6 107 + 0 87 176059 87 chain 265500 chr13 115169878 + 42494520 42497569 L1PA5 6144 + 3078 6132 15415 86 2 1 5 1 0 316 0 4 179 1 0 205 1 0 470 0 4 419 0 1 1364 chain 38077 chr13 115169878 + 42523328 42523771 L1PA7 6471 + 6027 6470 72018 443 chain 221271 chr13 115169878 + 42605035 42607452 L1PA3long 6157 + 3726 6143 17796 1249 1 0 685 0 1 482 chain 25604 chr13 115169878 + 42625783 42626089 AluSp 311 - 0 300 101709 122 6 0 178 chain 19269 chr13 115169878 + 42668193 42668414 L1PA4 6152 + 5930 6151 129321 221 chain 21459 chr13 115169878 + 42670387 42670650 L1PA16 3655 - 68 328 122301 10 3 0 250 chain 4810 chr13 115169878 + 42708579 42708649 MLT1E3 631 - 2 69 197235 58 3 0 9 chain 264738 chr13 115169878 + 42715068 42718064 L1PA4 6152 - 0 3031 15455 96 0 30 30 1 0 271 0 2 248 0 1 167 0 1 50 0 4 1290 2 1 279 1 0 561 chain 7116 chr13 115169878 + 42718064 42718141 L1PA4 6152 + 3058 3135 175437 77 chain 110210 chr13 115169878 + 42737000 42738208 L1PA3long 6157 - 0 1209 34154 497 0 1 711 chain 13762 chr13 115169878 + 42785853 42786149 THE1B 368 - 65 366 145396 61 1 0 12 74 79 68 24 25 56 chain 14365 chr13 115169878 + 42822821 42823032 Tigger3c 601 + 318 540 143329 7 0 5 53 7 11 124 3 5 17 chain 28736 chr13 115169878 + 42835677 42836063 MER83 447 - 57 447 90181 143 8 11 198 6 7 31 chain 23663 chr13 115169878 + 42842486 42842780 L1PA6 6164 - 5 300 112234 40 1 9 136 7 0 110 chain 5470 chr13 115169878 + 42852168 42852295 MER20 218 + 90 218 190304 43 16 0 3 5 0 8 15 37 37 chain 28745 chr13 115169878 + 42903891 42904264 THE1C 375 - 0 375 90147 25 1 0 160 8 7 37 0 4 142 chain 14205 chr13 115169878 + 42932926 42933099 L1PREC2 3366 + 817 990 143865 173 chain 2747 chr13 115169878 + 42955466 42955516 LTR12 884 + 258 338 229525 13 3 34 8 1 0 25 chain 162436 chr13 115169878 + 42959076 42960858 L1PA2 6032 - 2 1787 23008 18 1 0 138 4 8 1621 chain 89861 chr13 115169878 + 42999016 43000000 L1HS 6032 + 0 984 39697 984 chain 468691 chr13 115169878 + 43000000 43005048 L1PA2 6032 + 984 6032 8081 5048 chain 29270 chr13 115169878 + 43014942 43015252 AluYg6 310 + 0 310 87692 310 chain 16207 chr13 115169878 + 43022188 43022535 THE1C 375 + 14 375 137730 33 62 71 51 1 2 5 1 0 10 45 51 104 1 0 34 chain 157653 chr13 115169878 + 43025781 43027758 L1P3 4156 - 2172 4156 23642 32 0 1 597 0 1 936 1 0 18 0 3 25 2 0 47 5 4 68 2 1 33 25 32 186 chain 208251 chr13 115169878 + 43036302 43038845 L1PA7 6471 + 3281 6466 18621 237 12 12 1049 1 0 375 0 1 62 1 2 130 15 647 501 20 18 60 0 1 39 0 10 41 chain 144932 chr13 115169878 + 43041246 43043251 L1MA2 4263 + 1266 3277 25336 65 8 12 64 1 0 18 3 8 54 1 2 43 18 20 121 0 1 167 3 0 6 0 3 124 14 1 59 1 7 17 13 12 140 6 8 382 3 5 36 6 5 51 5 0 43 26 29 119 6 8 7 1 0 374 chain 65230 chr13 115169878 + 43050405 43051122 SVA_A 1864 + 1143 1860 50456 717 chain 78025 chr13 115169878 + 43075367 43076245 L1PA4 6152 + 5264 6143 44499 774 0 1 104 chain 255605 chr13 115169878 + 43078243 43081783 L1PA7 6471 - 3 3190 15955 496 0 1 321 1 0 4 0 1 6 0 1 17 1 0 196 0 1 60 311 0 145 8 9 314 15 22 1012 1 2 31 19 2 335 0 2 43 0 9 25 48 1 131 chain 528356 chr13 115169878 + 43090113 43096561 L1PA7 6471 + 0 6457 4369 352 0 1 50 5 0 6 4 0 10 0 1 100 0 1 127 5 1 453 0 2 861 0 10 234 0 1 426 1 0 65 1 0 395 0 4 126 0 1 136 0 1 6 1 3 120 1 0 174 0 1 161 1 0 506 0 1 238 1 0 4 0 1 60 2 0 347 7 6 550 1 2 75 3 0 193 0 2 281 0 1 43 0 2 316 chain 2777 chr13 115169878 + 43108975 43109028 MLT1K 546 + 146 200 229071 24 9 10 20 chain 130948 chr13 115169878 + 43128936 43130370 L1PA3long 6157 - 1874 3309 27828 338 0 1 1096 chain 168945 chr13 115169878 + 43130370 43132237 L1PA3long 6157 + 4286 6157 22170 355 1 0 35 1 6 1475 chain 90858 chr13 115169878 + 43133728 43134989 LTR12C 1709 + 0 1709 39336 41 0 4 58 2 3 150 7 8 27 4 5 42 0 43 210 1 24 36 0 278 183 1 0 5 3 1 97 44 13 266 0 131 84 chain 4250 chr13 115169878 + 43182465 43182513 L1PA6 6164 + 6114 6162 203870 48 chain 19220 chr13 115169878 + 43190473 43190915 MER50 708 + 451 708 129472 114 188 0 83 1 4 56 chain 85410 chr13 115169878 + 43215724 43216809 L1PA10 4194 - 44 1166 41377 34 3 0 64 15 16 92 10 14 129 8 36 662 0 2 57 0 5 11 chain 29999 chr13 115169878 + 43249890 43250208 AluYb8 318 - 0 318 84817 318 chain 14104 chr13 115169878 + 43253835 43254420 MER49 923 + 0 286 144204 90 69 74 47 306 2 5 0 1 60 1 0 7 chain 160837 chr13 115169878 + 43264655 43267008 L1PB1 5432 - 8 4123 23223 4 1 0 16 1 0 13 1 0 21 1 0 14 70 60 16 1 0 43 1 0 16 2 1 52 2 0 10 40 34 10 11 0 9 1 2 285 15 16 167 4 7 142 1 0 35 1 0 120 6 9 222 5 0 70 0 3 57 0 1 7 2 0 86 1 1814 212 0 4 30 0 1 4 1 0 374 56 35 7 1 0 86 chain 19567 chr13 115169878 + 43271089 43271435 THE1D 372 - 23 372 128470 107 30 36 19 0 1 4 9 4 6 0 6 34 0 4 50 5 9 7 4 0 10 9 0 52 chain 88821 chr13 115169878 + 43284923 43285939 LTR5A 1029 + 0 1029 40076 134 0 13 882 chain 28187 chr13 115169878 + 43286572 43286914 THE1A 353 - 12 353 92349 229 1 0 112 chain 22895 chr13 115169878 + 43289321 43289594 AluSc 308 + 0 279 116128 77 0 6 196 chain 24240 chr13 115169878 + 43334445 43334739 AluSp 311 - 3 296 108997 180 1 0 113 chain 3180 chr13 115169878 + 43337476 43337511 MADE1 96 - 3 38 221347 35 chain 530188 chr13 115169878 + 43345060 43351541 L1PA7 6471 - 10 6468 4169 264 0 4 80 0 7 311 11 14 187 79 0 299 0 9 140 0 2 539 1 0 119 0 1 657 10 33 15 1 2 281 1 0 241 2 0 32 0 12 55 0 7 509 11 0 380 1 0 775 2 1 939 0 1 133 0 1 40 3 4 21 0 1 342 chain 22748 chr13 115169878 + 43352256 43352500 L1PA2 6032 - 1 245 116836 244 chain 5435 chr13 115169878 + 43357518 43357757 Tigger4a 237 - 0 237 190660 46 7 0 4 126 0 10 5 0 14 0 135 6 0 1 21 chain 17951 chr13 115169878 + 43373797 43374033 L1PA16 3655 + 3360 3593 132980 219 6 3 11 chain 3977 chr13 115169878 + 43382350 43382426 MER96B 391 + 243 317 207739 33 17 15 26 chain 24611 chr13 115169878 + 43391869 43392208 THE1B 368 - 11 366 106932 38 5 13 105 5 0 17 1 0 16 1 0 109 0 15 42 chain 123792 chr13 115169878 + 43392210 43393789 THE1B-int 1605 - 0 1605 29773 17 0 1 532 6 0 230 0 7 291 1 0 76 1 26 425 chain 239020 chr13 115169878 + 43430802 43433423 L1PA3long 6157 + 3532 6156 16828 619 0 1 488 0 1 658 0 1 856 chain 24720 chr13 115169878 + 43436433 43436765 THE1B 368 + 0 357 106330 40 0 15 119 1 0 133 16 27 23 chain 43073 chr13 115169878 + 43440287 43440828 MLT2A2 560 + 0 560 65331 163 0 9 60 1 0 170 0 11 147 chain 40435 chr13 115169878 + 43442139 43442590 LTR7 482 - 0 482 68681 191 0 31 260 chain 255874 chr13 115169878 + 43443743 43446839 HERVH-int 3825 - 705 3825 15943 25 0 3 67 0 2 837 0 1 469 4 31 83 0 4 156 0 1 217 16 1 209 9 10 223 0 3 13 0 2 6 4 5 53 2 1 42 0 37 15 32 0 24 1 0 10 1 0 38 5 0 12 23 22 9 2 0 489 chain 39483 chr13 115169878 + 43446841 43447294 LTR7 482 - 0 482 70042 46 9 7 138 0 31 260 chain 5452 chr13 115169878 + 43459125 43459225 MER50 708 - 32 139 190507 30 8 11 16 10 14 36 chain 29680 chr13 115169878 + 43475907 43476236 L1PA3long 6157 - 0 331 85903 12 0 3 133 1 0 183 chain 4477 chr13 115169878 + 43503684 43503734 MER90a 614 + 539 589 201046 50 chain 29972 chr13 115169878 + 43505327 43505640 AluYb8 318 - 5 318 84904 313 chain 30034 chr13 115169878 + 43516805 43517123 AluYb8 318 - 0 318 84701 318 chain 80560 chr13 115169878 + 43517869 43518815 L1PA7 6471 + 5521 6470 43365 93 0 3 853 chain 22486 chr13 115169878 + 43519198 43519565 THE1B 368 - 1 368 118079 59 1 0 60 7 6 12 1 0 13 1 5 12 40 40 38 1 0 122 chain 4357 chr13 115169878 + 43526083 43526190 LTR12 884 + 247 317 193767 24 11 0 31 37 11 4 chain 5978 chr13 115169878 + 43526190 43526279 LTR12 884 + 78 274 185443 37 1 0 24 0 108 27 chain 137642 chr13 115169878 + 43539957 43541435 SVA_F 1814 + 10 1814 26535 845 0 290 82 1 38 206 1 0 343 chain 42391 chr13 115169878 + 43556145 43556688 MER41A 554 + 0 544 66162 421 6 7 116 chain 79088 chr13 115169878 + 43614679 43615645 LTR5_Hs 974 - 0 974 44010 104 2 0 36 5 12 83 0 4 167 0 1 264 0 10 53 13 0 6 1 2 232 chain 7775 chr13 115169878 + 43616219 43616390 MER44A 345 - 30 164 172452 32 64 27 75 chain 30700 chr13 115169878 + 43619445 43619914 LTR2B 499 - 0 490 83037 196 16 17 120 27 39 15 5 12 35 1 0 25 0 3 23 1 0 5 chain 68843 chr13 115169878 + 43629710 43631033 L1PB1 5432 - 2800 3847 48879 62 0 4 38 8 4 11 0 5 7 0 6 3 12 0 30 16 19 94 14 3 79 1 0 196 304 17 24 0 5 22 1 0 182 0 11 64 10 13 135 0 3 10 chain 29423 chr13 115169878 + 43633817 43634236 LTR7B 505 - 10 505 86972 41 14 13 54 0 1 21 1 0 85 1 3 24 4 28 12 0 38 36 0 3 21 0 10 105 chain 4017 chr13 115169878 + 43648939 43648986 MER8 282 + 0 47 207110 47 chain 3746 chr13 115169878 + 43670804 43671203 MLT1H 522 + 0 500 211225 9 0 6 13 1 0 8 1 37 22 89 92 14 214 271 28 chain 14475 chr13 115169878 + 43683828 43684004 L1PA5 6144 + 5965 6142 142965 60 0 1 116 chain 44577 chr13 115169878 + 43705486 43706116 MER41B 635 - 0 620 63502 108 1 0 4 0 1 54 0 3 5 8 4 182 19 21 119 20 9 110 chain 4307 chr13 115169878 + 43711103 43711154 MER53 195 - 137 188 203125 51 chain 8072 chr13 115169878 + 43723424 43723536 MER2 342 - 0 113 170634 44 3 4 65 chain 121230 chr13 115169878 + 43735067 43736371 L1PA2 6032 - 1210 2514 30626 1304 chain 110433 chr13 115169878 + 43736371 43737571 L1PA2 6032 + 4828 6028 34088 1200 chain 149940 chr13 115169878 + 43738595 43740379 L1PA7 6471 - 4 1795 24616 270 0 4 572 1 0 288 8 11 330 7 8 308 chain 15869 chr13 115169878 + 43748655 43748845 L1PA8A 6298 - 10 200 138748 190 chain 11204 chr13 115169878 + 43751681 43751842 HSMAR2 1300 - 1134 1299 155407 69 7 11 85 chain 9219 chr13 115169878 + 43754216 43754607 LTR12 884 + 173 677 164459 8 1 0 24 19 8 37 43 0 20 1 43 18 6 7 40 147 272 27 chain 28109 chr13 115169878 + 43822020 43822320 AluYa5 310 - 10 310 92611 300 chain 39434 chr13 115169878 + 43835709 43836135 L1PA2 6032 + 5603 6029 70112 426 chain 3153 chr13 115169878 + 43846082 43846117 L1ME5 779 - 159 194 221879 35 chain 41334 chr13 115169878 + 43925568 43926011 L1PA2 6032 - 7 450 67490 443 chain 9251 chr13 115169878 + 43981577 43981712 L1PA8 5853 - 0 139 164301 24 7 13 56 1 0 19 2 1 26 chain 110766 chr13 115169878 + 43989382 43991320 SVA_B 1603 - 0 1529 34012 504 16 0 26 0 3 80 0 3 37 94 107 14 1 4 22 76 0 13 141 31 46 0 3 37 73 2 110 151 0 364 0 1 74 11 0 48 chain 3555 chr13 115169878 + 44008797 44008839 MADE2 80 - 38 80 214439 42 chain 33052 chr13 115169878 + 44026262 44026658 L1PA7 6471 - 4 401 79134 335 0 1 61 chain 58031 chr13 115169878 + 44079691 44080342 L1PA4 6152 - 800 1455 53961 50 0 4 601 chain 71625 chr13 115169878 + 44080343 44081124 L1PA4 6152 + 5362 6143 47643 781 chain 80389 chr13 115169878 + 44105333 44106219 L1PA4 6152 + 5263 6151 43432 114 0 1 765 0 1 7 chain 29319 chr13 115169878 + 44155258 44155567 AluYa5 310 - 1 310 87447 309 chain 4794 chr13 115169878 + 44169552 44169603 L1PA6 6164 - 2 53 197421 51 chain 54287 chr13 115169878 + 44177895 44178492 L1PA3long 6157 - 370 971 56174 473 0 4 124 chain 39453 chr13 115169878 + 44189734 44190208 L1PA7 6471 - 7 478 70086 36 2 0 297 2 1 137 chain 382506 chr13 115169878 + 44191691 44196836 L1PB1 5432 - 289 5413 10679 5 1 0 24 5 0 7 5 8 284 31 21 87 0 2 76 1 0 6 7 15 27 22 0 139 0 1 15 0 1 106 0 5 145 1 0 61 0 6 6 8 2 21 0 5 76 1 0 116 1 0 137 6 3 53 9 13 271 9 0 3 1 0 145 2 1 13 2 1 336 1 0 57 3 1 132 1 2 123 0 3 63 0 1 171 14 16 607 6 10 111 0 1 61 0 4 18 4 10 91 17 8 8 2 0 7 1 0 740 4 17 29 2 0 5 2 3 200 7 5 306 0 1 35 19 8 27 chain 470562 chr13 115169878 + 44285059 44290510 L1PA4 6152 - 6 5319 8017 87 3 0 301 5 4 1113 0 5 288 0 4 54 0 1 2062 0 2 23 0 2 547 57 1 348 90 0 131 3 1 339 chain 28329 chr13 115169878 + 44295512 44295813 AluYa5 310 - 9 310 91837 301 chain 3149 chr13 115169878 + 44303989 44304025 U6 107 - 60 96 221932 36 chain 3895 chr13 115169878 + 44347401 44347455 L1MB5 1630 + 1561 1614 208921 39 2 1 13 chain 25955 chr13 115169878 + 44354010 44354320 AluY 311 + 0 306 100186 123 5 0 9 0 1 173 chain 29483 chr13 115169878 + 44368136 44368446 AluYb8 318 - 8 318 86695 310 chain 13932 chr13 115169878 + 44379600 44379833 L1PA8 5853 - 0 215 144811 93 1 0 18 3 2 32 0 7 13 39 16 34 chain 29313 chr13 115169878 + 44380341 44380652 AluYa5 310 - 0 310 87500 184 1 0 126 chain 46121 chr13 115169878 + 44391975 44392514 L1P1 4361 - 2646 4259 61922 479 5 1079 55 chain 57048 chr13 115169878 + 44392514 44393172 L1PA4 6152 + 5489 6152 54501 403 1 0 146 0 1 102 0 5 6 chain 5730 chr13 115169878 + 44395221 44395344 L1M1 2793 - 1261 1376 187831 25 8 0 45 20 26 6 6 0 13 chain 34447 chr13 115169878 + 44398527 44399030 L1PA17 2846 + 2194 2692 76998 59 0 1 146 0 1 18 0 4 76 4 0 17 2 1 16 1 0 59 2 0 8 9 8 28 1 0 14 1 0 42 chain 122864 chr13 115169878 + 44408239 44409598 L1PA4 6152 + 4784 6143 30091 1359 chain 29364 chr13 115169878 + 44410704 44411013 AluYb8 318 + 0 309 87226 309 chain 3048 chr13 115169878 + 44412360 44412393 MER57C2 434 + 401 434 224043 33 chain 56761 chr13 115169878 + 44414529 44415183 L1PA4 6152 - 13 663 54680 164 5 0 86 0 1 399 chain 4967 chr13 115169878 + 44415183 44415237 L1P1 4361 + 102 156 195507 54 chain 233325 chr13 115169878 + 44426451 44429727 L1PA13 3608 + 86 3335 17124 4 1 0 16 7 5 27 3 0 26 2 1 12 3 0 25 28 16 73 2 0 125 15 13 16 2 0 15 8 3 18 1 0 17 3 1 17 2 0 18 1 0 6 0 1 89 2 0 414 1 0 9 3 1 459 7 11 68 7 0 89 0 7 29 1 0 135 0 4 22 0 5 12 3 0 14 1 0 72 8 13 9 0 1 4 1 0 19 3 6 381 0 2 209 1 0 443 3 0 6 13 33 18 50 34 114 2 0 62 chain 22448 chr13 115169878 + 44450972 44451255 AluSx 319 + 8 296 118259 199 3 7 43 0 1 38 chain 2756 chr13 115169878 + 44461772 44461823 L1MB2 1706 + 45 95 229362 24 8 7 19 chain 23646 chr13 115169878 + 44484727 44484994 AluYf4 310 - 8 271 112331 179 4 0 84 chain 3340 chr13 115169878 + 44502337 44502375 MLT2A2 560 + 520 558 218228 38 chain 49245 chr13 115169878 + 44530991 44531583 L1PA7 6471 - 1 588 59556 7 5 0 78 1 0 253 0 1 248 chain 5993 chr13 115169878 + 44531583 44531654 L1PA7 6471 + 5810 5879 185304 39 2 0 30 chain 552648 chr13 115169878 + 44540934 44550350 L1PA2 6032 - 0 6031 1117 14 0 2 1313 0 2 192 3388 0 4146 1 0 362 chain 50344 chr13 115169878 + 44575540 44576179 LTR12 884 + 0 869 58761 25 1 0 30 0 107 157 0 25 34 2 0 55 2 0 172 0 103 161 chain 95885 chr13 115169878 + 44610634 44611673 L1PA3long 6157 - 7 1045 37849 140 1 0 898 chain 80226 chr13 115169878 + 44611673 44612554 L1PA3long 6157 + 4233 5114 43468 881 chain 3940 chr13 115169878 + 44649958 44650002 MER33 330 + 21 65 208267 44 chain 4464 chr13 115169878 + 44654373 44654424 MSTB-int 1649 + 1593 1644 201188 51 chain 131740 chr13 115169878 + 44656104 44657708 L1PA7 6471 - 17 1624 27689 87 0 3 5 15 4 715 2 1 22 0 3 361 0 9 397 chain 13050 chr13 115169878 + 44668667 44668823 MER50B 698 - 13 169 148032 156 chain 87082 chr13 115169878 + 44688092 44689033 L1PA2 6032 - 1 942 40744 941 chain 19506 chr13 115169878 + 44697212 44697458 L1PA4 6152 - 0 254 128639 10 0 6 22 0 1 115 1 2 98 chain 68067 chr13 115169878 + 44723088 44723894 L1PA7 6471 + 5661 6467 49215 806 chain 30815 chr13 115169878 + 44744808 44745637 L1M1 2793 - 1578 2301 82841 36 3 4 172 1 0 100 28 27 37 1 0 6 0 2 5 31 29 22 2 0 9 23 20 6 2 0 11 40 27 38 132 65 9 3 0 11 2 1 10 1 0 6 3 0 9 2 0 5 43 37 11 1 0 8 chain 19197 chr13 115169878 + 44756642 44756880 L1PA4 6152 - 0 247 129534 6 0 5 102 0 1 33 8 11 89 chain 73349 chr13 115169878 + 44768353 44769173 L1PA4 6152 - 1 821 46859 820 chain 58781 chr13 115169878 + 44769173 44777114 L1PA4 6152 + 5071 6143 53517 242 3 0 28 7130 265 286 1 0 251 chain 42421 chr13 115169878 + 44787787 44788498 L1PB1 5432 - 30 690 66115 11 1 0 21 1 0 15 13 11 16 3 0 31 14 1 10 12 11 38 1 0 16 2 1 52 2 0 9 11 7 5 1 0 9 1 0 24 1 0 5 19 6 106 9 5 37 1 0 167 1 0 46 chain 14957 chr13 115169878 + 44857218 44857387 L1PA7 6471 - 152 321 141454 169 chain 31771 chr13 115169878 + 44858814 44859219 L1PA8 5853 - 0 398 81212 93 1 0 19 2 1 48 1 0 13 2 1 70 2 0 44 1 0 109 chain 28322 chr13 115169878 + 44888335 44888762 MER57A1 433 - 0 433 91860 129 2 0 23 0 20 8 22 2 171 15 16 19 8 15 30 chain 29562 chr13 115169878 + 44901897 44902242 L1PA8 5853 - 1498 1844 86372 267 0 1 78 chain 121280 chr13 115169878 + 44902242 44903713 L1PA8 5853 + 4376 5853 30610 428 0 1 169 0 12 24 3 1 550 5 4 43 2 0 5 0 2 60 5 4 9 2 1 51 2 1 19 1 0 93 chain 12233 chr13 115169878 + 44922601 44922748 MER2 342 + 132 279 151287 147 chain 23193 chr13 115169878 + 44928147 44928420 AluY 311 + 0 291 114703 41 0 18 232 chain 3214 chr13 115169878 + 44975865 44975928 MER5A 189 + 96 161 220673 27 17 19 19 chain 109367 chr13 115169878 + 44987528 44988900 LTR12C 1709 + 0 1709 34353 296 0 1 353 0 278 143 0 47 106 0 4 54 1 0 36 8 9 25 8 12 90 10 18 143 15 10 84 chain 3207 chr13 115169878 + 44991555 44991590 MLT2B2 565 + 525 560 220825 35 chain 38923 chr13 115169878 + 45030214 45030722 LTR12 884 - 148 884 70836 75 0 98 187 2 0 154 1 133 89 chain 14516 chr13 115169878 + 45053365 45053576 MER30 238 + 0 237 142834 20 4 16 30 0 6 29 10 18 118 chain 24467 chr13 115169878 + 45057515 45057823 AluY 311 + 0 302 107717 131 11 0 39 3 8 124 chain 8305 chr13 115169878 + 45162518 45162693 MER61A 341 + 134 325 169372 29 34 49 27 17 18 68 chain 54672 chr13 115169878 + 45167988 45168778 LTR12 884 - 133 884 55925 22 104 1 352 2 0 33 0 66 277 chain 24804 chr13 115169878 + 45198340 45198635 AluSp 311 - 0 301 105868 145 0 5 19 0 1 131 chain 5682 chr13 115169878 + 45214081 45214152 MER3 215 + 54 125 188273 71 chain 26892 chr13 115169878 + 45254319 45254684 THE1B 368 + 0 368 96657 13 2 0 27 0 5 57 8 9 61 2 1 195 chain 150957 chr13 115169878 + 45255921 45257580 SVA_D 2077 - 21 2077 24484 568 0 211 63 3 0 128 0 183 855 0 6 42 chain 3106 chr13 115169878 + 45270097 45270317 MamRep38 296 + 71 292 222836 26 165 166 29 chain 42401 chr13 115169878 + 45278900 45279447 MER4E1 777 - 188 777 66146 37 12 9 195 0 23 191 4 26 108 chain 24489 chr13 115169878 + 45292253 45292545 AluSp 311 - 9 301 107605 292 chain 11411 chr13 115169878 + 45302755 45302909 MER21A 919 - 351 518 154641 40 0 12 71 3 4 40 chain 9499 chr13 115169878 + 45336664 45336792 MSTB 430 - 305 430 163079 104 0 1 4 4 0 16 chain 253697 chr13 115169878 + 45347801 45350771 L1P2 5180 - 1181 4167 16045 104 0 2 194 0 2 515 3 4 102 0 4 324 0 1 427 0 1 345 0 1 459 5 6 421 0 3 71 chain 4276 chr13 115169878 + 45351798 45351850 MER1B 344 - 6 58 203523 52 chain 17702 chr13 115169878 + 45353362 45353576 AluSg4 309 - 26 240 133697 214 chain 17236 chr13 115169878 + 45367823 45368160 THE1D 372 - 40 372 134965 86 2 8 17 60 55 94 4 0 6 17 13 35 1 3 15 chain 8312 chr13 115169878 + 45379189 45379308 MLT2A2 560 - 462 560 169325 16 21 0 82 chain 16684 chr13 115169878 + 45406076 45406268 L1PA6 6164 + 5971 6162 136452 187 1 0 4 chain 94808 chr13 115169878 + 45409428 45410696 HSMAR1 1287 - 11 1282 38140 299 11 13 292 18 11 90 6 6 238 2 1 45 0 1 125 0 4 25 0 4 117 chain 23194 chr13 115169878 + 45435197 45435485 AluY 311 + 0 284 114700 45 0 1 51 3 1 25 3 0 161 chain 183515 chr13 115169878 + 45436273 45438334 L1PA5 6144 + 4081 6143 20625 1811 8 9 242 chain 23586 chr13 115169878 + 45447213 45447499 AluY 311 + 2 290 112652 87 0 1 36 0 1 134 0 2 5 3 1 21 chain 27805 chr13 115169878 + 45451913 45452271 THE1B 368 + 0 368 93676 40 0 15 113 2 0 120 5 2 78 chain 20780 chr13 115169878 + 45473706 45474036 L1PA8 5853 + 5529 5853 124677 35 1 0 45 2 0 69 13 11 38 18 17 16 1 0 33 9 10 50 chain 23135 chr13 115169878 + 45490902 45491187 AluY 311 + 16 296 114968 107 1 0 5 1 2 158 5 0 8 chain 22035 chr13 115169878 + 45511773 45512049 AluSp 311 + 10 296 120084 27 11 21 238 chain 28975 chr13 115169878 + 45523334 45523635 AluYa5 310 - 9 310 89115 301 chain 6347 chr13 115169878 + 45529866 45529974 MER30 238 - 0 140 182405 45 1 4 29 4 10 12 1 24 16 chain 30219 chr13 115169878 + 45558846 45559189 L1PA3long 6157 - 0 343 84134 343 chain 14401 chr13 115169878 + 45560848 45561033 Tigger1 2417 + 1738 1927 143207 20 0 4 165 chain 23967 chr13 115169878 + 45568990 45569275 AluSp 311 - 14 300 110530 136 0 1 149 chain 28828 chr13 115169878 + 45575160 45575518 THE1C 375 + 7 369 89772 128 0 4 230 chain 24333 chr13 115169878 + 45619281 45619575 AluSp 311 + 10 304 108462 294 chain 10657 chr13 115169878 + 45648353 45648475 AluSp 311 - 12 134 157578 122 chain 24412 chr13 115169878 + 45663934 45664232 AluSp 311 + 4 297 108019 116 5 0 177 chain 4291 chr13 115169878 + 45664640 45664709 MER41A 554 - 86 156 203347 29 8 9 32 chain 18448 chr13 115169878 + 45682668 45683243 MER4B 649 + 332 569 131647 142 339 0 15 0 1 79 chain 44826 chr13 115169878 + 45707437 45708088 LTR76 689 + 18 682 63262 31 0 3 77 6 2 118 1 2 42 9 12 24 0 12 35 5 6 9 0 1 157 1 2 89 2 0 7 16 13 22 chain 5751 chr13 115169878 + 45712024 45712100 U6 107 - 29 107 187627 60 1 0 5 0 3 10 chain 25067 chr13 115169878 + 45726046 45726341 AluSp 311 - 8 303 104471 295 chain 17367 chr13 115169878 + 45749378 45749629 L1MA5 2750 - 104 356 134605 13 6 5 66 1 0 16 9 12 140 chain 57721 chr13 115169878 + 45763058 45763772 L1PA6 6164 - 17 732 54124 128 4 5 177 4 3 58 8 9 335 chain 24478 chr13 115169878 + 45808904 45809205 AluSp 311 + 6 311 107663 264 2 0 6 0 6 29 chain 3793 chr13 115169878 + 45815598 45815739 MER3 215 - 6 163 210481 33 83 99 25 chain 25554 chr13 115169878 + 45847057 45847360 AluSg7 307 - 5 307 101962 174 6 5 123 chain 56995 chr13 115169878 + 45849459 45850095 L1PA5 6144 - 20 656 54532 636 chain 23683 chr13 115169878 + 45860818 45861105 AluSp 311 - 16 300 112136 167 2 0 3 1 0 114 chain 22597 chr13 115169878 + 45864723 45864982 AluSp 311 + 30 289 117594 259 chain 27211 chr13 115169878 + 45888638 45888921 AluYa5 310 + 15 298 95557 283 chain 24091 chr13 115169878 + 45892816 45893110 AluSz 310 + 22 310 109794 255 11 5 28 chain 2891 chr13 115169878 + 45950128 45950174 MSTB1 431 + 384 431 227189 28 4 5 14 chain 47831 chr13 115169878 + 45950741 45951353 HERVE-int 4064 - 1347 1946 60603 495 27 14 90 chain 49429 chr13 115169878 + 45952211 45952809 HERVE-int 4064 - 1347 1946 59437 334 0 1 264 chain 47588 chr13 115169878 + 45952887 45954139 HERVE-int 4064 - 1359 1946 60776 462 662 0 32 3 0 93 chain 7376 chr13 115169878 + 45953385 45953473 HERVE-int 4064 - 1858 1946 174933 88 chain 25776 chr13 115169878 + 45953551 45953874 HERVE-int 4064 - 1359 1681 100983 92 1 0 230 chain 5816 chr13 115169878 + 45953874 45953937 HERVE-int 4064 - 1682 1745 186995 63 chain 50872 chr13 115169878 + 45954754 45955355 HERVE-int 4064 - 1347 1946 58388 332 0 1 173 3 0 93 chain 50752 chr13 115169878 + 45956771 45957373 HERVE-int 4064 - 1347 1946 58463 506 3 0 93 chain 42079 chr13 115169878 + 45957451 45957946 HERVE-int 4064 - 1359 1853 66520 92 1 0 402 chain 7286 chr13 115169878 + 45957949 45958042 HERVE-int 4064 - 1853 1946 175548 93 chain 6805 chr13 115169878 + 45963316 45963404 L1MB3 1562 + 1464 1551 178910 59 1 0 28 chain 21337 chr13 115169878 + 46021002 46021265 LTR8 732 - 459 729 122726 151 0 7 112 chain 24663 chr13 115169878 + 46031160 46031538 MSTA 426 + 0 405 106653 55 1 0 46 7 12 31 8 15 45 5 2 20 0 2 8 3 0 60 1 21 88 chain 24981 chr13 115169878 + 46034004 46034342 THE1B 368 + 0 337 104906 69 12 13 90 3 1 164 chain 155606 chr13 115169878 + 46058757 46060422 SVA_F 1814 - 26 1801 23911 601 1 0 10 1 0 172 1 113 879 chain 292704 chr13 115169878 + 46130549 46134364 L1PB1 5432 - 5 3811 13843 5 2 0 18 1 0 10 4 3 21 1 0 24 2 0 15 1 0 4 2 0 29 17 4 11 7 6 40 1 0 13 9 8 49 2 0 8 11 7 5 1 0 9 1 0 24 1 0 9 39 2 100 3 0 6 1 2 207 1 0 82 1 3 19 0 3 58 0 2 654 7 5 230 1 0 242 0 4 291 0 1 261 7 8 57 0 28 14 0 1 5 2 0 316 1 7 179 2 4 206 0 1 108 0 1 124 0 19 234 chain 15912 chr13 115169878 + 46139624 46139938 THE1B 368 + 21 368 138623 23 23 38 27 1 3 49 20 26 11 35 45 125 chain 118241 chr13 115169878 + 46139938 46141484 THE1B-int 1605 + 0 1582 31712 32 1 2 148 0 12 69 6 7 22 6 5 131 3 28 164 0 2 100 7 6 566 20 17 271 chain 21005 chr13 115169878 + 46141506 46141847 THE1B 368 + 0 368 123893 44 0 15 107 1 0 8 1 0 12 30 32 10 7 15 89 1 5 31 chain 16375 chr13 115169878 + 46174774 46175032 L1PB4 2604 - 143 405 137272 53 10 12 9 2 0 24 13 17 147 chain 525637 chr13 115169878 + 46190527 46196959 L1PA7 6471 - 10 6460 4615 411 0 1 428 1 4 50 0 1 224 0 1 9 0 1 28 0 1 217 0 1 109 0 2 18 1 0 376 0 2 6 1 0 293 0 4 13 0 1 641 0 10 106 2 0 184 7 6 414 6 10 175 4 0 69 15 4 66 1 0 620 0 11 382 0 1 159 11 0 753 1 0 244 1 2 284 0 6 102 chain 522348 chr13 115169878 + 46209316 46215764 L1PA7 6471 - 10 6466 4924 138 15 15 10 24 26 305 0 1 342 0 3 15 0 4 293 0 1 189 15 4 687 0 1 930 1 0 382 0 1 10 0 4 392 11 9 4 0 1 49 14 4 120 0 2 570 0 1 42 0 3 239 0 1 267 0 3 690 7 5 246 24 28 19 1 2 114 4 5 279 chain 10663 chr13 115169878 + 46215900 46216070 MER41A 554 + 399 554 157552 68 1 6 54 22 2 25 chain 11117 chr13 115169878 + 46216267 46216430 PABL_A-int 1935 + 99 257 155750 9 2 0 26 8 5 118 chain 97163 chr13 115169878 + 46216435 46217719 MER41-int 2638 + 1363 2636 37522 512 2 0 36 3 1 115 13 18 110 1 0 27 1 0 42 0 2 39 0 1 16 25 15 38 3 0 301 chain 39137 chr13 115169878 + 46217728 46218194 MER41A 554 + 0 466 70560 466 chain 557009 chr13 115169878 + 46219165 46225202 L1PA2 6032 + 0 6032 607 526 4 0 3092 1 0 2414 chain 59137 chr13 115169878 + 46236899 46237579 L1PA7 6471 - 5 683 53309 8 2 0 670 chain 562736 chr13 115169878 + 46238199 46244348 L1PA3long 6157 - 4 6151 281 853 1 0 1355 0 1 1990 2 0 1948 chain 5808 chr13 115169878 + 46257583 46257652 L1PA2 6032 + 5963 6032 187062 69 chain 12667 chr13 115169878 + 46275875 46276097 LTR45C 530 + 292 513 149584 137 51 50 34 chain 22606 chr13 115169878 + 46311088 46311325 AluYb8 318 - 8 245 117566 237 chain 29308 chr13 115169878 + 46327358 46327760 MLT2A1 477 - 76 477 87529 17 3 1 184 5 6 12 1 2 9 4 1 112 1 3 54 chain 466988 chr13 115169878 + 46327760 46333389 HERVL-int 5654 - 0 5654 8146 201 2 3 98 1 3 452 4 0 695 3 12 479 9 7 100 7 0 427 0 6 309 0 1 228 0 1 96 6 5 389 0 8 133 0 3 102 1 2 954 2 1 105 2 3 90 0 4 91 1 2 121 8 7 273 0 2 161 0 1 79 chain 29113 chr13 115169878 + 46333389 46333805 MLT2A1 477 - 0 473 88500 8 0 4 25 7 51 172 9 20 17 0 1 9 4 1 165 chain 4582 chr13 115169878 + 46334448 46334529 MER5A1 166 + 41 123 199844 34 15 16 32 chain 25513 chr13 115169878 + 46337979 46338451 MER65A 464 - 0 463 102172 43 10 0 46 0 1 33 67 45 107 2 0 50 1 11 49 33 47 31 chain 10410 chr13 115169878 + 46340003 46340142 MER34B 572 - 421 572 158645 67 5 8 33 0 9 34 chain 12828 chr13 115169878 + 46352896 46353112 MER2 342 + 133 341 148935 7 10 0 84 0 1 53 24 25 38 chain 4791 chr13 115169878 + 46369755 46369809 LTR40a 516 + 406 460 197458 54 chain 10156 chr13 115169878 + 46391316 46391571 Tigger3a 397 + 58 371 159824 16 19 68 37 3 9 91 71 74 18 chain 7129 chr13 115169878 + 46428914 46429023 L1MC 810 - 667 768 176548 33 7 0 64 1 0 4 chain 21364 chr13 115169878 + 46434519 46434833 L1PA8 5853 + 5536 5853 122636 14 10 19 41 2 0 69 1 0 8 5 4 44 8 7 18 1 0 93 chain 32853 chr13 115169878 + 46445259 46445727 LTR2B 499 - 0 485 79450 182 1 0 8 4 5 40 0 5 11 15 10 60 0 1 5 1 0 43 0 19 39 2 0 57 chain 41227 chr13 115169878 + 46449970 46450504 LTR10F 562 - 0 562 67612 267 1 0 20 2 0 10 0 24 10 16 13 31 0 9 161 0 1 16 chain 13361 chr13 115169878 + 46460738 46461120 MSTB2 466 - 62 466 146843 8 1 0 31 198 217 118 0 4 26 chain 4318 chr13 115169878 + 46489420 46489472 MER52D 1964 + 598 650 202997 52 chain 21943 chr13 115169878 + 46497096 46497412 AluSz 310 + 5 306 120446 115 4 0 19 12 10 5 0 2 43 11 0 107 chain 43829 chr13 115169878 + 46555403 46555875 L1PA3long 6157 - 282 754 64410 472 chain 26660 chr13 115169878 + 46555875 46556163 L1PA3long 6157 + 5869 6157 97455 288 chain 29168 chr13 115169878 + 46557551 46557861 AluYk12 309 - 0 309 88216 183 1 0 126 chain 7717 chr13 115169878 + 46566635 46566733 MER85 139 + 0 96 172815 73 2 0 23 chain 6599 chr13 115169878 + 46569903 46569984 MSTB 430 + 330 411 180461 81 chain 11889 chr13 115169878 + 46588314 46588538 L1PA8 5853 - 0 200 152648 77 25 6 9 2 1 19 2 1 38 0 7 7 10 1 8 1 0 26 chain 25909 chr13 115169878 + 46642680 46642974 L1PA7 6471 - 2 297 100380 160 0 1 134 chain 4124 chr13 115169878 + 46707428 46707477 L1PA16 3655 + 3520 3569 205605 49 chain 122061 chr13 115169878 + 46736401 46737787 SVA_C 1631 + 0 1631 30365 463 0 116 271 5 1 47 0 133 600 chain 25678 chr13 115169878 + 46767427 46767729 AluYk4 311 + 9 311 101378 302 chain 400653 chr13 115169878 + 46788799 46794144 L1PA8A 6298 - 8 5394 10073 806 4 1 158 1 0 952 0 14 202 0 1 128 7 2 413 1 0 191 0 4 432 1 7 335 0 6 43 1 0 90 4 0 594 0 1 356 0 1 78 3 6 43 2 1 52 20 20 105 9 9 14 277 298 23 chain 64139 chr13 115169878 + 46796658 46797356 L1PA3long 6157 + 5459 6157 50944 698 chain 78681 chr13 115169878 + 46813840 46815275 L1PA13 3608 + 2424 3518 44199 391 330 0 314 1 0 31 7 6 34 5 3 70 2 0 62 1 0 56 1 0 5 2 0 47 2 0 5 9 7 13 33 36 14 chain 46421 chr13 115169878 + 46858155 46858666 SVA_A 1864 + 1353 1864 61664 511 chain 19888 chr13 115169878 + 46879341 46879669 L1MA2 4263 + 3806 4114 127523 148 8 5 81 35 18 12 1 2 33 1 0 9 chain 10044 chr13 115169878 + 46906928 46907037 L1PA2 6032 - 1 110 160353 109 chain 12056 chr13 115169878 + 46948556 46948721 U2 167 - 7 167 151964 15 10 6 9 2 0 81 0 1 48 chain 58261 chr13 115169878 + 46966189 46966942 MER4E1 777 + 0 777 53830 14 1 4 296 0 1 15 1 20 82 0 1 108 10 9 35 1 2 190 chain 20251 chr13 115169878 + 46968951 46969193 L1PA8 5853 - 225 462 126378 19 4 0 45 1 0 173 chain 10508 chr13 115169878 + 46969195 46969335 L1PA8 5853 + 5623 5760 158216 56 1 0 9 2 1 51 2 1 19 chain 189897 chr13 115169878 + 46981282 46983685 L1P3 4156 - 1766 4156 20064 132 1 0 11 0 6 79 0 5 570 1 2 576 24 0 607 0 1 79 1 0 61 11 10 50 0 1 200 chain 18660 chr13 115169878 + 47000832 47001099 THE1B 368 + 0 283 131050 42 1 16 114 12 11 15 0 2 83 chain 33377 chr13 115169878 + 47031230 47031610 L1PA5 6144 - 0 380 78605 380 chain 36398 chr13 115169878 + 47034231 47034669 L1PA5 6144 - 9 446 74368 234 11 10 193 chain 49369 chr13 115169878 + 47038806 47039493 HERVE-int 4064 + 2118 2705 59471 93 4 1 94 97 0 399 chain 49791 chr13 115169878 + 47039974 47041341 HERVE-int 4064 + 2118 2717 59166 93 4 1 105 765 0 400 chain 35123 chr13 115169878 + 47040231 47040656 HERVE-int 4064 + 2275 2699 76026 338 1 0 86 chain 7605 chr13 115169878 + 47040740 47040833 HERVE-int 4064 + 2118 2211 173516 93 chain 49471 chr13 115169878 + 47041804 47042403 HERVE-int 4064 + 2118 2717 59410 93 3 0 173 0 1 20 0 1 216 0 1 94 chain 20424 chr13 115169878 + 47044047 47044309 AluY 311 + 0 257 125832 15 4 0 107 6 5 130 chain 35600 chr13 115169878 + 47045719 47046824 MER4A 717 + 0 473 75414 120 645 1 167 2 0 38 0 14 133 chain 19544 chr13 115169878 + 47062117 47062495 MSTA 426 - 0 426 128529 98 0 1 10 38 92 21 4 1 51 66 62 90 chain 170445 chr13 115169878 + 47079917 47081850 L1PA5 6144 - 2 1957 21998 564 0 11 266 0 4 788 0 7 315 chain 70261 chr13 115169878 + 47089024 47089784 SVA_F 1814 - 0 775 48284 10 2 0 230 0 1 375 0 16 143 chain 24136 chr13 115169878 + 47110861 47111223 MER39B 650 - 0 372 109549 21 0 3 18 9 0 7 4 15 35 16 19 98 0 1 86 0 1 68 chain 10024 chr13 115169878 + 47122527 47123082 L1PB1 5432 - 10 239 160461 18 1 0 12 1 0 18 5 4 24 2 0 14 53 39 12 308 0 45 1 0 15 1 3 25 chain 14738 chr13 115169878 + 47147504 47147730 L1MA2 4263 + 3899 4116 142142 56 12 10 93 7 0 11 0 1 35 1 0 11 chain 31341 chr13 115169878 + 47190839 47191268 LTR7B 505 - 2 505 81911 49 14 13 54 0 1 24 1 0 41 1 2 37 0 2 28 3 27 12 0 38 60 0 10 105 chain 29403 chr13 115169878 + 47200422 47200834 LTR7B 505 + 10 496 87052 95 0 10 60 0 38 12 3 27 28 0 2 37 1 2 44 1 0 23 0 1 52 14 13 42 chain 5660 chr13 115169878 + 47223116 47223182 L1PA6 6164 + 5822 5888 188477 66 chain 21588 chr13 115169878 + 47241578 47241822 L1PA5 6144 + 5901 6144 121815 101 1 0 142 chain 15935 chr13 115169878 + 47246061 47246463 L1MC1 2226 - 31 438 138565 12 1 0 14 3 1 16 1 0 17 78 88 13 0 2 39 2 0 8 8 5 67 1 0 24 5 0 14 28 36 51 chain 7854 chr13 115169878 + 47266132 47266292 MSTB 430 - 242 423 171965 22 56 77 82 chain 112916 chr13 115169878 + 47329511 47330768 L1PA4 6152 - 9 1264 33398 140 1 0 974 1 0 141 chain 33144 chr13 115169878 + 47343929 47344319 L1PA5 6144 - 9 390 78996 9 1 0 95 1 0 27 7 0 250 chain 3008 chr13 115169878 + 47372999 47373055 MLT1A0 366 - 58 113 224880 20 12 11 24 chain 69625 chr13 115169878 + 47381707 47382518 L1PA7 6471 - 4 814 48560 8 2 0 143 0 1 658 chain 49866 chr13 115169878 + 47392028 47393044 MER52C 1267 + 0 1213 59107 113 20 21 58 36 188 116 9 5 41 9 12 128 75 115 53 96 92 36 1 0 14 71 0 6 0 71 30 0 5 38 0 5 66 chain 25332 chr13 115169878 + 47447599 47447882 L1PA3long 6157 - 15 299 103066 97 0 1 186 chain 23535 chr13 115169878 + 47464207 47464483 AluSp 311 + 11 287 112930 276 chain 4910 chr13 115169878 + 47483365 47483439 L1PB3 3668 - 102 173 196155 37 3 1 25 1 0 8 chain 32513 chr13 115169878 + 47487128 47487489 L1PA4 6152 - 9 369 79999 144 1 0 216 chain 16952 chr13 115169878 + 47493021 47493291 L1PA16 3655 - 1277 1557 135725 26 4 10 66 7 8 99 10 11 11 0 3 42 1 0 4 chain 130231 chr13 115169878 + 47509247 47510754 LTR12C 1709 - 0 1709 28036 481 0 4 107 2 0 6 1 0 74 0 200 569 0 1 267 chain 112757 chr13 115169878 + 47515964 47517325 L1PA7 6471 + 5055 6433 33458 140 0 4 270 0 5 147 0 4 265 3 4 49 0 1 192 0 1 186 0 1 109 chain 14340 chr13 115169878 + 47520305 47520512 MER75 514 + 294 513 143425 64 3 7 70 12 20 58 chain 66190 chr13 115169878 + 47552476 47553220 L1PA4 6152 - 9 749 50009 132 7 0 522 0 3 83 chain 7464 chr13 115169878 + 47577406 47577512 L1PB4 2604 - 34 139 174376 18 4 3 84 chain 52080 chr13 115169878 + 47587978 47588619 PABL_A 660 - 0 660 57574 161 2 12 390 5 14 83 chain 184638 chr13 115169878 + 47592104 47594124 L1PA3long 6157 - 2 2022 20534 2020 chain 4690 chr13 115169878 + 47616919 47616970 L1MB1 2102 + 1939 1990 198632 51 chain 25853 chr13 115169878 + 47629613 47629973 THE1B 368 - 1 368 100641 170 2 0 18 5 6 4 1 0 69 10 4 41 0 15 40 chain 284829 chr13 115169878 + 47677397 47681467 L1PA10 4194 + 223 4161 14363 9 2 0 9 34 30 16 79 51 18 1 0 5 3 2 7 1 0 10 1 0 15 7 0 8 1 0 85 2 0 334 0 18 363 1 0 67 7 0 8 2 13 336 0 6 128 11 0 232 30 34 81 0 1 168 126 0 210 15 12 97 19 28 46 0 5 22 4 8 251 2 0 167 7 1 12 0 4 101 2 1 297 0 2 339 7 18 183 0 1 30 8 6 32 1 0 11 chain 40848 chr13 115169878 + 47685545 47686024 HERV1_LTRc 486 - 9 482 68099 43 5 0 341 1 0 89 chain 42942 chr13 115169878 + 47720451 47720995 MLT2A2 560 - 0 556 65488 54 0 1 4 1 0 88 4 15 245 0 1 148 chain 132334 chr13 115169878 + 47722421 47724125 L1PA10 4194 - 1314 3027 27553 178 0 5 22 16 19 32 0 1 107 1 0 232 1 0 196 0 4 376 7 6 83 4 3 449 chain 62435 chr13 115169878 + 47734934 47735969 LTR12 884 - 11 884 51707 30 225 0 466 2 0 20 41 0 87 0 107 138 1 0 25 chain 12773 chr13 115169878 + 47735014 47735189 LTR12 884 - 92 277 137964 13 18 28 144 chain 19770 chr13 115169878 + 47784067 47784306 AluSg4 309 + 70 307 127906 61 2 0 176 chain 370518 chr13 115169878 + 47795732 47799724 L1PA2 6032 - 0 3991 11076 3463 1 0 528 chain 45301 chr13 115169878 + 47814129 47814724 L1PA7 6471 - 3 597 62715 7 3 0 143 22 20 166 0 1 126 0 2 5 4 5 119 chain 4705 chr13 115169878 + 47843127 47843188 MLT1D 503 - 7 68 198461 61 chain 11295 chr13 115169878 + 47845497 47845765 L1PB1 5432 + 5162 5424 155072 5 2 0 30 1 0 23 2 1 16 1 0 43 1 0 14 40 42 10 2 0 16 9 8 21 2 5 8 1 0 16 1 0 4 chain 8176 chr13 115169878 + 47848879 47848981 MLT2C2 476 - 373 475 170094 102 chain 40509 chr13 115169878 + 47868976 47869531 L1PA8A 6298 - 2376 2952 68581 50 0 1 4 2 0 5 1 3 275 0 3 100 0 1 21 1 13 29 0 4 4 1 0 34 3 4 25 chain 187468 chr13 115169878 + 47869532 47871893 L1PA8A 6298 + 3918 6291 20295 39 6 7 175 3 0 322 0 1 396 1 7 24 1 4 168 1 0 33 1 0 392 1 0 93 5 6 379 0 1 209 5 6 91 0 4 16 chain 16063 chr13 115169878 + 47889717 47889898 L1PA8 5853 - 1161 1342 138169 181 chain 90892 chr13 115169878 + 47889898 47891069 L1PA8 5853 + 4691 5850 39327 233 0 2 77 14 6 77 2 1 345 6 7 125 1 0 46 2 0 69 1 0 8 0 6 7 7 1 30 1 0 9 2 1 109 chain 7770 chr13 115169878 + 47907006 47907097 MSTA 426 - 318 409 172476 91 chain 169680 chr13 115169878 + 47916727 47919548 L1PB1 5432 + 2826 5277 22094 16 2 0 168 0 5 35 5 2 14 0 9 121 0 4 37 1 0 241 6 5 38 5 6 203 290 14 125 25 18 518 1 0 75 0 5 93 0 1 41 0 6 5 28 0 173 3 11 252 110 36 15 5 0 20 2 0 6 1 0 12 2 0 3 2 0 8 14 12 41 19 17 40 chain 229991 chr13 115169878 + 47940350 47943188 L1PA7 6471 - 3 2860 17307 91 0 1 205 10 9 28 1 2 141 2 0 270 0 3 18 0 2 38 0 4 31 1 4 288 5 7 1067 1 2 54 1 2 198 0 5 285 1 0 93 0 1 4 1 0 4 chain 27636 chr13 115169878 + 47948486 47948790 AluYf4 310 - 7 310 94248 95 2 1 207 chain 503960 chr13 115169878 + 47952790 47958402 L1PA3long 6157 + 6 6149 6606 88 0 526 419 0 1 2149 1 0 684 0 1 483 0 4 698 1 0 833 1 0 85 7 9 163 chain 46745 chr13 115169878 + 47974797 47975335 L1PA4 6152 + 5614 6152 61417 467 0 1 10 0 1 54 2 0 5 chain 2651 chr13 115169878 + 47995673 47995703 MLT1A 405 - 375 405 231002 30 chain 20106 chr13 115169878 + 48006332 48006607 L1PA8 5853 + 5583 5853 126804 25 2 0 69 4 3 60 2 1 19 1 0 93 chain 146187 chr13 115169878 + 48007970 48009734 L1PA4 6152 - 0 1767 25134 5 3 0 849 0 4 171 0 1 428 0 1 182 5 4 88 0 1 33 chain 133979 chr13 115169878 + 48024143 48025847 L1PA8A 6298 - 1340 3062 27213 290 5 6 41 0 2 157 0 1 67 0 2 520 1 2 61 0 3 104 1 0 221 0 1 32 1 9 45 5 6 98 2 1 53 chain 102779 chr13 115169878 + 48025852 48027164 L1PA8A 6298 + 4969 6287 36058 274 0 6 171 0 1 38 32 8 22 1 4 79 0 1 103 0 1 492 0 18 100 chain 27098 chr13 115169878 + 48030452 48030747 AluYb8 318 + 21 316 95951 295 chain 31259 chr13 115169878 + 48036601 48036984 LTR3B 427 - 35 427 82064 57 8 14 18 0 3 300 chain 466688 chr13 115169878 + 48037592 48043758 L1PA8A 6298 + 77 6287 8165 23 4 1 23 57 46 6 1 0 13 2 0 9 26 23 8 1 0 5 2 1 9 1 0 7 11 6 9 2 0 33 14 13 16 8 0 77 2 0 21 1 0 7 4 2 76 1 0 253 18 18 311 0 4 25 0 3 15 5 6 76 12 10 22 0 1 110 4 7 376 0 1 192 4 1 452 0 2 97 2 1 121 1 2 80 0 70 198 0 4 376 0 4 17 6 0 40 22 1 43 1 0 30 0 1 86 0 1 303 0 2 54 0 5 143 0 1 192 0 1 11 0 1 305 1 0 4 0 1 752 0 5 116 5 9 18 0 3 718 0 5 70 chain 58484 chr13 115169878 + 48047286 48047928 L1PA4 6152 + 5501 6143 53708 642 chain 29353 chr13 115169878 + 48072895 48073205 AluYa5 310 - 1 310 87278 183 1 0 126 chain 45128 chr13 115169878 + 48104904 48105415 L1PA3long 6157 + 5644 6156 62899 316 1 3 189 1 0 4 chain 39788 chr13 115169878 + 48107005 48107564 L1PBa 3878 + 2007 2567 69644 164 6 8 118 1 0 162 2 1 57 11 12 38 chain 98933 chr13 115169878 + 48107877 48109157 L1P2 5180 - 1981 3244 37041 30 0 2 427 0 1 90 4 0 65 6 10 173 0 1 4 1 4 66 24 0 390 chain 170323 chr13 115169878 + 48109157 48111354 L1PA5 6144 + 3770 6143 22011 177 0 2 116 0 58 431 1 2 62 6 4 12 4 5 22 6 8 114 0 1 796 8 118 158 0 3 284 chain 502347 chr13 115169878 + 48137748 48144145 L1PA7 6471 + 2 6452 6707 199 1 0 26 17 18 76 15 11 80 11 0 154 8 1 186 0 13 78 0 1 5 16 18 17 2 0 328 0 4 50 19 20 421 1 0 45 7 24 425 0 1 316 0 2 116 1 3 39 0 5 354 2 1 47 10 14 384 17 13 54 0 4 16 0 3 1085 4 7 8 0 4 199 0 1 200 0 1 4 1 0 222 0 5 163 0 5 121 0 4 95 0 2 19 0 3 27 4 0 105 0 1 597 chain 7366 chr13 115169878 + 48144520 48144647 Tigger3b 1229 - 9 137 175004 51 25 26 51 chain 5294 chr13 115169878 + 48145266 48145330 Tigger3c 601 + 465 529 192083 64 chain 26479 chr13 115169878 + 48157387 48157742 THE1A 353 - 0 353 98130 155 1 0 81 0 1 6 2 1 60 9 8 41 chain 126445 chr13 115169878 + 48157742 48159299 THE1A-int 1579 - 0 1579 28959 96 0 8 557 0 1 332 0 2 139 4 6 11 3 4 284 0 10 42 2 0 87 chain 17251 chr13 115169878 + 48164976 48165181 L1PA5 6144 + 5267 5472 134921 27 1 0 83 0 1 94 chain 57035 chr13 115169878 + 48165185 48165841 L1PA5 6144 + 5482 6144 54513 195 0 6 461 chain 35255 chr13 115169878 + 48170013 48170614 LTR12_ 688 + 0 688 75857 93 0 2 23 3 28 21 42 0 92 17 16 145 69 39 26 0 133 70 chain 62790 chr13 115169878 + 48177990 48178663 L1PA2 6032 + 5358 6031 51543 673 chain 3593 chr13 115169878 + 48186304 48186342 L1PA3long 6157 + 6076 6114 213794 38 chain 2943 chr13 115169878 + 48186342 48186376 L1PA3long 6157 + 6123 6157 226273 34 chain 59274 chr13 115169878 + 48204626 48205279 L1PA4 6152 + 5490 6143 53239 653 chain 429710 chr13 115169878 + 48206272 48212057 L1PA8A 6298 + 34 5832 9314 6 1 0 18 2 1 7 3 0 5 2 0 7 6 1 23 3 0 20 47 36 15 1 0 4 1 0 10 2 0 13 77 65 43 1 0 22 6 0 78 2 0 13 2 1 10 1 0 3 1 0 55 3 4 17 1 0 192 2 3 55 10 12 39 18 21 283 1 4 9 1 4 403 16 9 19 0 2 8 0 3 43 20 17 655 9 12 147 3 5 44 14 16 36 0 1 167 1 4 245 0 4 79 0 4 147 8 12 44 1 0 73 0 1 12 24 21 73 0 8 420 2 5 272 0 2 532 0 2 66 1 0 108 5 8 26 0 1 401 0 13 111 1 0 80 0 6 59 2 6 267 chain 5589 chr13 115169878 + 48233966 48234038 MLT1E 632 - 6 77 189181 23 1 0 48 chain 16894 chr13 115169878 + 48236714 48236927 MLT2A1 477 + 20 232 135858 148 5 2 9 0 1 24 0 1 27 chain 254017 chr13 115169878 + 48242249 48245084 L1PA4 6152 + 3305 6143 16029 113 3 0 631 1 3 1252 0 4 835 chain 3628 chr13 115169878 + 48254734 48254797 MER5A1 166 - 6 73 213197 20 13 17 30 chain 46952 chr13 115169878 + 48257108 48257706 L1PA8 5853 - 5 616 61256 89 1 19 46 1 0 5 2 1 9 1 0 20 0 1 49 2 0 47 1 0 325 chain 9074 chr13 115169878 + 48258515 48258672 L1PA15 4387 - 31 182 165196 44 2 0 39 12 9 46 3 2 11 chain 28325 chr13 115169878 + 48259597 48259934 L1PA7 6471 - 728 1073 91848 4 0 1 36 0 2 72 0 5 225 chain 58920 chr13 115169878 + 48259934 48260628 L1PA7 6471 + 5762 6456 53443 369 1 0 307 0 1 17 chain 36268 chr13 115169878 + 48266194 48266604 L1PA7 6471 + 5934 6344 74535 410 chain 9946 chr13 115169878 + 48266604 48266718 L1PA7 6471 + 6345 6459 160852 114 chain 14027 chr13 115169878 + 48266979 48267131 L1PA3long 6157 - 0 152 144476 152 chain 556742 chr13 115169878 + 48286279 48292433 L1PA3long 6157 + 4 6153 643 437 7 1 5127 0 1 583 chain 17825 chr13 115169878 + 48301142 48301384 L1PA8 5853 + 5615 5853 133322 67 1 0 11 4 3 48 1 0 16 2 1 92 chain 351089 chr13 115169878 + 48303560 48307416 L1PA3long 6157 - 4 3866 11566 255 1 0 597 0 1 158 0 1 2249 0 1 445 0 4 151 chain 510659 chr13 115169878 + 48308928 48315025 L1PA6 6164 + 3 6161 6104 157 14 15 235 1 0 44 0 1 54 2 1 119 5 6 152 0 17 213 0 1 143 0 1 92 1 0 198 1 0 182 0 1 697 0 2 252 0 13 591 0 1 4 1 0 111 1 0 994 0 2 60 0 4 292 0 1 23 0 1 14 5 0 99 0 1 50 0 29 58 0 1 290 2 0 124 4 0 812 chain 62498 chr13 115169878 + 48315030 48315751 L1PA5 6144 + 5419 6140 51681 721 chain 61317 chr13 115169878 + 48315756 48316469 L1PA6 6164 + 5440 6154 52195 575 2 3 136 chain 59706 chr13 115169878 + 48326913 48327621 L1PA7 6471 + 3811 4520 52987 674 0 1 34 chain 160181 chr13 115169878 + 48327625 48329546 L1PA7 6471 + 4525 6467 23313 140 0 8 800 0 5 148 0 3 69 0 2 239 0 1 32 5 6 51 0 2 105 0 1 211 2 0 119 chain 337325 chr13 115169878 + 48342181 48346817 L1PA11 4918 - 292 4915 11965 15 47 33 11 2 0 13 1 0 15 50 37 14 2 1 10 9 7 32 0 22 9 2 0 13 2 1 61 0 1 184 1 0 94 1 2 14 0 7 150 10 9 11 0 6 163 0 1 560 0 2 48 0 1 4 2 1 38 1 0 93 6 5 181 0 1 41 4 0 27 0 2 147 5 0 246 0 1 4 1 0 39 5 8 8 0 1 28 0 3 206 0 1 180 4 1 330 1 0 74 5 3 12 0 2 533 13 4 142 6 16 478 22 19 20 1 0 49 3 1 15 1 0 30 10 7 33 8 6 36 chain 3534 chr13 115169878 + 48350871 48350927 MER53 195 - 105 162 214809 17 4 5 35 chain 49602 chr13 115169878 + 48352579 48353177 L1PA7 6471 - 4 607 59319 8 2 0 140 1 0 4 1 0 4 5 14 433 chain 11462 chr13 115169878 + 48353179 48353327 L1P3 4156 + 3994 4139 154460 113 2 0 7 2 1 24 chain 551616 chr13 115169878 + 48356023 48362047 L1PA2 6032 + 1 6027 1235 782 0 2 153 1 0 1631 1 0 817 0 1 1125 1 2 1513 chain 20028 chr13 115169878 + 48364082 48364386 THE1A 353 + 0 301 127047 109 2 1 84 1 0 16 26 25 5 0 1 20 1 0 40 chain 127772 chr13 115169878 + 48364434 48366011 THE1A-int 1579 + 0 1579 28625 270 0 3 1156 1 0 150 chain 12717 chr13 115169878 + 48366417 48366711 L1MB8 1703 + 1449 1678 149390 132 114 50 7 0 2 22 3 0 16 chain 4631 chr13 115169878 + 48378328 48378381 L1PA7 6471 + 5278 5331 199287 53 chain 94754 chr13 115169878 + 48378389 48379507 L1PA7 6471 + 5338 6461 38150 283 0 3 74 0 2 142 0 1 358 2 0 196 0 1 63 chain 21431 chr13 115169878 + 48397687 48397988 THE1B 368 + 0 306 122403 169 1 0 29 0 3 8 1 5 11 10 9 8 1 0 4 0 1 59 chain 5973 chr13 115169878 + 48406315 48406391 MER45A 178 + 76 152 185493 76 chain 4106 chr13 115169878 + 48409498 48409546 MER5B 177 + 129 177 205833 48 chain 13950 chr13 115169878 + 48419932 48420081 AluYa5 310 + 147 296 144753 149 chain 26400 chr13 115169878 + 48422735 48423043 L1PA5 6144 - 5 307 98412 137 6 0 165 chain 32074 chr13 115169878 + 48423047 48423550 L1PB1 5432 - 718 1231 80731 6 0 1 80 2 0 27 8 18 11 20 20 151 28 29 170 chain 16333 chr13 115169878 + 48436872 48437069 L1PA7 6471 - 1 198 137387 197 chain 13871 chr13 115169878 + 48437884 48438081 L1PB4 2604 + 2002 2202 145005 146 9 12 42 chain 123999 chr13 115169878 + 48446778 48448354 THE1B-int 1605 - 0 1605 29705 51 0 13 211 0 1 872 0 25 269 6 5 105 21 10 26 0 2 15 chain 171499 chr13 115169878 + 48473424 48475491 L1PA7 6471 + 4397 6470 21885 39 0 3 472 1 0 38 1 0 370 36 36 266 0 3 7 0 1 71 1 0 366 0 1 128 10 11 261 chain 504676 chr13 115169878 + 48482101 48488237 L1PA6 6164 + 0 6158 6560 449 19 0 67 2 0 51 15 14 115 6 7 34 0 2 48 0 17 122 1 5 257 1 2 382 0 2 187 0 1 572 1 0 323 0 4 535 0 1 41 0 5 233 0 3 222 0 3 670 0 1 940 0 3 73 8 7 178 5 3 579 chain 136077 chr13 115169878 + 48494988 48498652 L1PB1 5432 + 2504 5418 26819 38 0 156 53 23 27 52 3 0 411 7 8 136 1 0 4 0 1 137 0 13 44 319 0 26 1 12 18 0 2 88 1 2 78 17 16 166 23 9 39 4 0 99 21 20 52 318 15 225 1 0 86 1009 738 5 1 0 16 24 12 18 3 1 4 1 0 15 2 0 24 1 0 23 1 0 11 1 0 14 chain 3264 chr13 115169878 + 48499144 48499186 MADE1 96 + 45 96 219696 18 0 9 24 chain 2838 chr13 115169878 + 48522400 48522430 MER67A 545 + 0 30 228124 30 chain 3031 chr13 115169878 + 48530410 48530445 L1MEf 1413 + 434 469 224359 35 chain 31465 chr13 115169878 + 48531052 48531490 LOR1b 457 + 0 442 81704 27 5 15 106 3 0 48 10 5 70 2 1 112 0 3 55 chain 26303 chr13 115169878 + 48536911 48537333 LOR1b 457 + 0 456 98817 27 5 15 51 9 37 7 14 0 11 3 0 48 12 13 175 0 5 20 1 8 39 chain 8616 chr13 115169878 + 48547797 48547900 L1PA7 6471 + 6032 6137 167651 74 0 2 29 chain 27415 chr13 115169878 + 48547907 48548233 L1PA7 6471 + 6143 6470 94919 171 2 3 153 chain 150479 chr13 115169878 + 48551963 48553772 L1PA7 6471 + 4621 6461 24539 54 0 1 131 6 10 13 5 0 81 0 1 292 2 3 207 3 0 200 0 3 355 0 1 12 0 25 126 0 1 100 0 1 211 1 2 10 chain 37946 chr13 115169878 + 48560465 48560950 L1PA11 4918 - 529 1006 72215 58 6 0 21 1 0 190 0 1 24 4 0 128 0 2 53 chain 23810 chr13 115169878 + 48567895 48568207 AluSp 311 + 10 296 111415 13 3 0 118 0 1 52 24 0 102 chain 23641 chr13 115169878 + 48588032 48588306 AluY 311 + 18 292 112347 274 chain 204084 chr13 115169878 + 48589676 48591938 L1PA4 6152 + 3884 6151 18919 54 0 1 1365 0 4 309 0 1 384 2 1 148 chain 18785 chr13 115169878 + 48595167 48595389 L1PA7 6471 - 3414 3639 130720 40 0 3 182 chain 270655 chr13 115169878 + 48595775 48599078 L1PA7 6471 + 3151 6465 15155 377 0 1 77 1 0 58 1 3 266 12 13 255 0 1 33 0 1 58 10 9 192 7 8 165 0 4 136 0 1 395 2 3 414 3 0 127 1 2 189 0 1 179 0 1 345 chain 24095 chr13 115169878 + 48601456 48601727 AluY 311 + 6 277 109761 271 chain 44854 chr13 115169878 + 48605988 48606569 LTR14B 630 - 0 630 63227 37 5 4 35 11 14 213 7 53 23 0 1 250 chain 5946 chr13 115169878 + 48607058 48607132 MLT1A 405 - 303 377 185719 74 chain 27650 chr13 115169878 + 48607894 48608327 L1PB2 3958 + 3307 3732 94207 54 1 0 16 6 1 60 2 0 18 2 0 13 4 5 23 1 5 34 5 4 77 1 0 64 2 1 50 chain 29299 chr13 115169878 + 48613760 48614066 AluYa5 310 - 4 310 87584 306 chain 4544 chr13 115169878 + 48616297 48616455 LTR8 732 - 253 395 200296 27 88 72 43 chain 29393 chr13 115169878 + 48629502 48629894 LTR7 482 + 0 474 87103 86 1 51 87 17 49 201 chain 5658 chr13 115169878 + 48630479 48630548 LTR7 482 + 0 69 188490 69 chain 19898 chr13 115169878 + 48630569 48630839 LTR7 482 + 115 419 127489 43 9 9 57 8 40 82 0 2 71 chain 4226 chr13 115169878 + 48630851 48630900 LTR7 482 + 433 482 204210 49 chain 305797 chr13 115169878 + 48630902 48634760 HERVH-int 3825 + 0 3825 13177 20 1 2 311 2 1 188 23 76 20 1 0 13 45 0 24 4 3 6 1 0 27 7 6 52 1 0 31 59 0 153 0 1 357 1 0 167 0 10 132 4 3 178 39 25 157 0 1 122 10 15 984 0 19 304 0 1 191 0 2 223 chain 2674 chr13 115169878 + 48631679 48631711 HERVH-int 3825 + 514 545 194106 16 1 0 15 chain 203616 chr13 115169878 + 48642464 48645601 MER61-int 3695 + 11 3111 18953 17 7 0 10 1 0 4 11 4 15 4 9 38 1 0 90 39 0 52 1 0 22 1 0 54 5 1 5 3 0 79 13 1 50 7 8 47 1 2 26 8 14 156 3 8 130 2 0 18 3 0 34 40 44 146 1 0 34 0 34 49 0 1 127 1 0 78 3 1 53 9 0 99 5 1 95 0 1 160 9 5 236 0 1 61 0 1 51 0 3 126 1 0 391 3 7 42 9 14 65 64 61 10 5 6 20 86 83 42 31 30 28 chain 16427 chr13 115169878 + 48671843 48672192 HSMAR2 1300 - 0 225 137130 182 128 4 39 chain 90561 chr13 115169878 + 48681249 48682229 L1PA2 6032 - 0 980 39450 980 chain 6610 chr13 115169878 + 48710843 48710952 L1MA8 2339 + 2009 2117 180369 27 0 1 44 21 19 17 chain 23819 chr13 115169878 + 48747936 48748224 AluSc5 308 - 15 300 111371 175 3 0 110 chain 12441 chr13 115169878 + 48760434 48760769 L1MB3 1562 + 1248 1553 150488 42 1 0 61 1 0 9 97 73 5 2 0 21 34 33 32 1 0 29 chain 491120 chr13 115169878 + 48774951 48781089 L1PA6 6164 + 55 6101 7311 259 79 53 77 24 5 117 22 0 3 54 0 56 0 1 161 0 17 492 0 3 135 0 1 433 8 9 276 0 1 179 0 1 63 0 4 156 6 0 367 0 1 249 5 6 262 9 10 251 2 0 359 0 1 299 0 4 21 8 9 911 2 1 793 chain 15498 chr13 115169878 + 48782281 48782507 MER11C 1089 - 868 1089 139909 16 22 17 188 chain 3128 chr13 115169878 + 48783944 48784067 MIR 256 + 10 145 222393 35 72 84 16 chain 8551 chr13 115169878 + 48787919 48788133 L1MA6 2487 - 192 326 168009 4 1 0 14 2 0 38 89 12 66 chain 116312 chr13 115169878 + 48789908 48791634 THE1C-int 1605 + 0 1592 32341 14 11 10 158 2 3 28 0 4 129 0 3 95 9 37 14 8 13 184 4 5 608 174 1 32 4 3 247 1 0 4 chain 29304 chr13 115169878 + 48791642 48792004 THE1C 375 + 2 364 87548 183 1 2 163 1 0 14 chain 5234 chr13 115169878 + 48812970 48813033 MER41B 635 - 89 153 192692 44 0 1 19 chain 16624 chr13 115169878 + 48826514 48826761 MER1B 344 + 92 334 136601 138 3 0 32 24 23 44 1 0 5 chain 51289 chr13 115169878 + 48833990 48834616 L1PA7 6471 - 4 633 58121 106 4 5 310 0 2 206 chain 4848 chr13 115169878 + 48871814 48871911 MER45A 178 + 69 168 196808 48 28 30 21 chain 9034 chr13 115169878 + 48876959 48877087 L1PA8 5853 + 5727 5853 165419 13 3 2 18 1 0 93 chain 16101 chr13 115169878 + 48889955 48890159 L1P5 443 - 100 304 138054 204 chain 317804 chr13 115169878 + 48910240 48913945 L1P1 4361 - 636 4355 12682 644 0 4 381 3 6 973 0 1 677 0 2 114 0 4 157 7 5 5 0 2 744 chain 235214 chr13 115169878 + 48923540 48929394 L1MA1 4479 + 754 4188 17016 26 0 10 38 0 1 286 0 1 19 1 0 101 1 0 47 1 0 5 7 12 149 3 0 94 2 0 45 0 8 57 0 13 81 0 2 57 0 1 51 0 3 49 0 2 33 2445 0 16 0 1 83 0 7 4 0 1 32 3 4 20 4 7 42 4 0 24 0 4 216 0 2 194 1 0 65 2 1 79 4 8 10 8 6 33 1 0 44 0 1 24 1 0 85 1 0 27 16 14 55 0 4 99 2 0 21 4 0 73 1 0 12 16 11 116 18 11 118 3 1 63 10 25 107 0 1 4 2 0 35 6 5 66 1 0 19 2 0 14 1 0 11 0 1 74 2 1 6 3 0 126 1 0 9 0 1 19 2 0 35 1 0 9 1 0 5 5 3 13 7 0 16 chain 71069 chr13 115169878 + 48926115 48927126 L1PA14 3548 - 274 1247 47902 53 1 0 84 1 0 6 4 0 13 13 9 38 17 0 66 9 5 47 2 0 14 6 4 21 9 4 217 0 4 153 3 0 41 1 2 192 chain 115594 chr13 115169878 + 48955837 48957174 L1PA5 6144 - 4 1343 32586 348 15 0 226 0 13 255 1 5 492 chain 304207 chr13 115169878 + 48968090 48971785 L1PA7 6471 + 0 6466 13231 407 10 11 227 0 7 495 0 1 281 0 20 177 1 0 62 6 5 354 0 2739 67 9 10 755 1 3 378 0 1 203 0 1 262 chain 519816 chr13 115169878 + 48990289 48996651 L1PA7 6471 + 19 6460 5181 251 19 19 119 1 0 4 7 6 290 0 19 129 20 12 578 0 44 186 0 8 147 4 1 557 5 0 190 2 6 9 0 1 5 1 0 32 5 0 72 0 1 395 0 2 510 1 0 316 2 0 8 0 2 80 0 1 64 1 2 689 0 3 10 2 0 18 0 1 173 0 2 204 8 23 10 1 3 399 2 1 214 0 1 476 12 14 134 chain 14738 chr13 115169878 + 49003418 49003602 7SLRNA 320 + 14 201 142147 73 0 3 111 chain 560216 chr13 115169878 + 49039691 49045702 L1HS 6032 + 11 6025 340 984 25 25 2041 1 0 2121 0 4 839 chain 4066 chr13 115169878 + 49048534 49048583 MER21C 908 - 836 885 206392 49 chain 22241 chr13 115169878 + 49074417 49074672 AluSg 306 + 4 259 119162 255 chain 15320 chr13 115169878 + 49114864 49115084 MER4B 649 + 0 244 140427 62 10 11 123 3 26 22 chain 6362 chr13 115169878 + 49115084 49115157 MER57B1 401 + 0 73 182300 73 chain 17072 chr13 115169878 + 49115182 49115379 L1PA7 6471 + 6110 6307 135399 197 chain 12106 chr13 115169878 + 49115381 49115540 L1PA7 6471 + 6308 6468 151770 5 0 1 154 chain 4822 chr13 115169878 + 49158527 49158603 MADE1 96 + 5 96 197105 23 1 17 27 1 0 24 chain 36236 chr13 115169878 + 49165573 49166047 LTR2B 499 - 0 490 74576 180 1 0 10 5 6 173 0 19 37 3 0 23 0 1 36 1 0 5 chain 35213 chr13 115169878 + 49169071 49169515 LTR7 482 + 0 473 75906 101 16 15 116 0 31 111 1 0 99 chain 96280 chr13 115169878 + 49179351 49180774 L1MA3 4352 - 576 2093 37736 35 0 4 110 10 13 81 1 4 125 105 113 74 1 0 15 0 84 534 2 0 67 5 0 58 1 2 144 1 0 54 chain 7932 chr13 115169878 + 49186511 49186610 L1MB8 1703 - 260 357 171429 9 1 0 12 1 0 76 chain 6564 chr13 115169878 + 49190713 49190854 LTR47A 437 + 264 421 180755 15 12 23 59 30 35 25 chain 42009 chr13 115169878 + 49193236 49193784 MER61E 571 + 0 562 66609 82 0 13 308 23 23 104 0 1 31 chain 28355 chr13 115169878 + 49195711 49196082 THE1C 375 - 0 375 91745 25 1 0 74 0 1 81 16 19 87 0 1 87 chain 4823 chr13 115169878 + 49199907 49199985 LTR47A 437 + 263 352 197099 16 12 23 50 chain 40424 chr13 115169878 + 49200129 49200617 LTR15 485 + 0 484 68698 435 4 0 49 chain 523124 chr13 115169878 + 49242749 49250242 L1PA7 6471 - 5 6470 4856 105 670 0 133 3 2 198 1 2 401 0 1 4 1 0 998 0 1 42 0 1 576 1 0 62 0 1 101 6 2 27 2 0 136 0 1 148 16 20 13 1 0 5 1 2 339 327 0 14 3 4 486 16 0 343 1 2 507 1 4 772 0 1 25 17 0 289 0 1 87 0 1 32 3 0 64 23 18 74 11 12 408 chain 41577 chr13 115169878 + 49242937 49243424 L1PA7 6471 - 191 678 67189 487 chain 220604 chr13 115169878 + 49262441 49265079 L1PA7 6471 - 47 2690 17843 789 0 1 183 0 1 22 0 1 47 0 1 194 0 1 235 2 0 356 5 8 281 7 6 517 chain 497092 chr13 115169878 + 49270671 49276540 L1PA5 6144 + 0 6129 7004 121 0 14 18 3 15 170 21 0 831 9 0 304 3 0 1347 0 3 146 0 1 193 0 1 5 2 1 797 1 4 241 0 10 80 0 1 205 0 23 43 0 1 445 3 225 47 1 2 552 1 2 153 0 1 127 chain 17519 chr13 115169878 + 49288322 49288543 LTR64 526 - 297 519 134215 217 0 1 4 chain 20646 chr13 115169878 + 49299654 49300055 L1PB1 5432 + 5047 5420 125141 5 1 0 51 1 0 20 0 1 14 1 0 9 16 11 9 2 0 52 3 2 16 1 0 44 1 0 15 63 50 24 1 0 21 1 0 13 1 0 16 chain 4242 chr13 115169878 + 49326234 49326285 MADE1 96 + 45 96 203976 51 chain 24337 chr13 115169878 + 49328888 49329247 THE1B 368 + 0 368 108436 192 20 22 14 7 15 63 7 6 56 chain 126642 chr13 115169878 + 49329247 49330807 THE1B-int 1605 + 0 1598 28907 430 1 26 47 1 2 108 3 15 208 5 6 206 1 0 550 chain 23086 chr13 115169878 + 49330821 49331174 THE1B 368 + 7 368 115215 162 1 0 21 43 53 63 4 3 59 chain 4977 chr13 115169878 + 49359923 49359999 MLT1B 390 + 10 96 195396 48 7 17 21 chain 27742 chr13 115169878 + 49373228 49373549 AluYa5 310 - 0 310 93900 18 9 0 166 2 0 126 chain 59219 chr13 115169878 + 49425106 49425854 MER4E1 777 + 0 766 53272 24 0 1 310 0 1 169 7 27 11 19 15 208 chain 26545 chr13 115169878 + 49440856 49441229 LTR7B 505 - 18 505 97861 33 11 52 37 1 0 85 29 0 12 0 93 57 0 10 108 chain 207816 chr13 115169878 + 49442732 49445394 HERVH-int 3825 - 0 2633 18654 809 1 0 227 11 0 414 0 1 110 4 6 98 0 4 376 0 1 172 1 0 4 0 1 166 13 4 13 1 0 129 1 0 4 0 1 61 15 0 32 chain 26390 chr13 115169878 + 49446177 49446595 LTR7B 505 - 14 505 98449 37 14 13 26 3 2 5 0 1 96 1 89 27 35 11 69 0 10 105 chain 34791 chr13 115169878 + 49454480 49454914 MER57A1 433 + 0 433 76490 80 0 5 11 7 0 193 0 1 143 chain 5350 chr13 115169878 + 49504267 49504348 MADE1 96 + 0 96 191536 29 1 17 26 1 0 24 chain 149481 chr13 115169878 + 49507241 49509275 L1PB1 5432 - 23 2046 24689 5 1 0 13 1 0 21 5 4 20 1 0 14 8 5 31 3 0 16 1 0 43 7 6 10 2 1 41 0 2 7 3 1 10 2 0 3 2 0 9 1 0 9 1 0 24 13 11 43 13 28 108 5 6 103 3 4 184 3 1 170 3 0 339 7 1 159 0 1 224 2 0 5 2 7 334 chain 8697 chr13 115169878 + 49562052 49562153 U6 107 + 6 107 167212 101 chain 25448 chr13 115169878 + 49562153 49562470 L1P3 4156 + 2669 2989 102464 194 1 0 20 0 4 102 chain 5588 chr13 115169878 + 49566900 49567006 MADE1 96 - 0 93 189187 22 0 2 11 10 0 9 11 6 43 chain 86027 chr13 115169878 + 49575206 49576274 MER11B 1079 + 0 1074 41144 220 0 5 34 3 0 104 0 3 326 0 1 79 8 2 127 1 0 15 1 2 24 0 5 106 1 2 19 chain 543651 chr13 115169878 + 49587520 49593763 L1PA3long 6157 - 5 6157 2249 67 220 0 1988 3 0 777 0 2 958 0 1 1455 0 128 34 0 1 25 2 1 562 0 1 152 chain 89721 chr13 115169878 + 49624155 49625338 L1PB1 5432 - 2838 4013 39746 99 4 0 54 1 4 46 5 1 680 1 0 41 24 22 228 chain 35642 chr13 115169878 + 49632193 49632630 LTR2 463 - 0 463 75348 22 0 1 249 9 29 27 0 2 75 0 3 55 chain 10772 chr13 115169878 + 49640831 49640965 L1PA7 6471 - 2 134 157101 11 3 1 120 chain 8790 chr13 115169878 + 49641659 49641787 MER85 139 + 0 139 166703 96 13 24 19 chain 18544 chr13 115169878 + 49646629 49647070 L1MA4 2864 - 1684 1973 131377 58 6 8 53 177 23 147 chain 9845 chr13 115169878 + 49648235 49648504 L1PB1 5432 - 5 243 161362 5 2 0 18 1 0 12 1 0 22 1 0 22 90 71 35 10 5 16 3 1 31 chain 13588 chr13 115169878 + 49651716 49651930 L1PA8 5853 + 5643 5853 146020 36 1 0 7 15 14 40 2 1 15 5 4 93 chain 80005 chr13 115169878 + 49665563 49666528 HERVL-int 5654 - 1775 2754 43592 245 0 1 150 9 20 88 0 1 311 1 2 161 chain 13767 chr13 115169878 + 49666538 49666742 MLT2A1 477 - 264 477 145375 15 0 1 13 19 17 69 0 8 12 0 2 76 chain 7589 chr13 115169878 + 49669527 49669625 HY3 101 + 1 99 173610 61 1 0 6 0 1 30 chain 519619 chr13 115169878 + 49692327 49698632 L1PA7 6471 + 134 6470 5199 265 5 6 204 0 1 411 0 1 144 0 1 61 5 10 142 0 13 1239 4 0 74 0 1 152 9 5 25 0 4 591 5 4 15 1 0 243 1 0 320 1 0 186 5 7 200 0 1 494 0 1 460 1 2 71 3 0 134 1 2 95 0 3 101 0 1 169 4 8 448 4 9 12 chain 6109 chr13 115169878 + 49708845 49708934 L1MB7 1623 - 446 536 184348 34 6 7 49 chain 74229 chr13 115169878 + 49725712 49726638 L1PA6 6164 - 2 927 46400 6 4 0 147 9 6 296 0 2 351 0 2 33 1 4 19 1 0 59 chain 553041 chr13 115169878 + 49726649 49732671 L1PA2 6032 - 3 6020 1064 95 7 0 761 0 1 1285 1 3 722 1 0 3150 chain 431031 chr13 115169878 + 49732731 49737900 L1P2 5180 - 2 5178 9290 4 1 0 38 1 0 47 1 0 36 1 0 691 0 2 344 0 2 92 1 0 751 1 0 696 1 16 65 0 4 5 0 2 128 10 4 215 0 1 102 8 0 66 1 2 7 0 5 739 2 1 17 6 7 247 0 1 48 1 0 6 1 0 272 1 0 8 1 0 260 1 0 96 2 1 148 chain 25067 chr13 115169878 + 49750158 49750481 L1P3 4156 - 17 344 104470 13 1 0 11 15 20 283 chain 24817 chr13 115169878 + 49750481 49750767 L1PA7 6471 + 6173 6459 105792 286 chain 28935 chr13 115169878 + 49789810 49790112 AluYa5 310 - 8 310 89296 302 chain 45823 chr13 115169878 + 49811730 49812325 MER4B 649 - 25 649 62206 60 1 0 365 0 42 59 12 0 98 chain 6164 chr13 115169878 + 49815666 49815736 LTR26E 604 + 0 70 183845 70 chain 33312 chr13 115169878 + 49818525 49818972 MER4A1 472 + 0 472 78716 90 0 1 10 0 1 123 2 23 143 21 23 58 chain 4266 chr13 115169878 + 49821274 49821431 MER3 215 + 51 210 203672 11 3 0 21 84 89 38 chain 20209 chr13 115169878 + 49855495 49855793 MER1B 344 - 0 313 126506 59 10 23 104 1 2 71 12 13 41 chain 4447 chr13 115169878 + 49903614 49903667 MER21B 843 + 382 435 201379 53 chain 45897 chr13 115169878 + 49912285 49912792 L1PA3long 6157 + 5645 6152 62135 507 chain 21006 chr13 115169878 + 49915380 49915638 AluSg7 307 - 0 259 123887 180 0 1 78 chain 4728 chr13 115169878 + 49915806 49915863 L1MA4 2864 + 2746 2804 198181 21 0 1 36 chain 103775 chr13 115169878 + 49937999 49939659 L1MA2 4263 + 473 3487 35778 10 1 0 3 3 0 16 1 0 95 15 8 216 152 1522 21 0 9 212 1 0 59 3 1 52 5 0 14 6 5 24 5 4 164 2 3 117 2 0 130 2 0 16 17 19 99 1 7 8 8 0 180 chain 3672 chr13 115169878 + 49938457 49938501 L1MA2 4263 + 770 814 212337 44 chain 23679 chr13 115169878 + 49949658 49949930 L1PA5 6144 + 5860 6132 112157 272 chain 8196 chr13 115169878 + 49951417 49951516 LTR9B 643 - 442 549 169973 88 0 8 11 chain 159343 chr13 115169878 + 49951564 49953852 SVA_F 1814 + 9 1814 23423 207 1 0 179 0 39 403 8 8 43 1 0 26 49 0 33 481 15 39 1 0 4 1 0 172 1 0 4 1 0 623 1 0 10 chain 3041 chr13 115169878 + 49952441 49952481 SVA_F 1814 + 1032 1105 135087 13 13 46 14 chain 28479 chr13 115169878 + 49952518 49952844 SVA_F 1814 + 966 1291 91270 65 0 1 106 2 1 135 1 0 17 chain 11472 chr13 115169878 + 49952866 49952995 SVA_F 1814 + 962 1089 111805 39 1 0 4 1 0 84 chain 21380 chr13 115169878 + 49979931 49980282 L1MA3 4352 + 3865 4200 122584 204 68 52 79 chain 3362 chr13 115169878 + 49986512 49986549 MADE1 96 - 59 96 217832 37 chain 46639 chr13 115169878 + 50037470 50038153 LTR76 689 - 0 689 61507 42 1 0 93 0 8 41 14 3 68 0 5 35 2 1 18 0 1 5 3 58 14 58 0 127 0 1 120 0 3 28 0 4 14 chain 2845 chr13 115169878 + 50039639 50039674 LTR24B 570 - 0 35 227940 35 chain 27059 chr13 115169878 + 50049130 50049481 THE1B 368 - 0 368 96083 82 1 0 86 0 4 24 8 7 106 0 15 44 chain 54709 chr13 115169878 + 50078623 50079214 SVA_D 2077 + 1109 1926 55893 110 0 226 481 chain 24421 chr13 115169878 + 50094178 50094482 AluSc 308 - 6 308 107964 45 1 0 45 1 0 212 chain 113854 chr13 115169878 + 50139159 50140405 SVA_C 1631 + 42 1623 33133 576 0 37 109 0 296 278 0 2 283 chain 4617 chr13 115169878 + 50147494 50147550 MER66C 541 - 485 541 199439 56 chain 35062 chr13 115169878 + 50149270 50149805 L1PA16 3655 + 2972 3520 76099 116 38 40 76 1 0 74 17 12 128 7 24 78 chain 167185 chr13 115169878 + 50166314 50168379 SVA_F 1814 + 9 1814 22372 904 49 0 35 0 15 25 177 0 139 49 0 687 chain 2130 chr13 115169878 + 50167225 50167251 SVA_F 1814 + 870 898 237374 16 0 2 10 chain 13892 chr13 115169878 + 50167327 50167504 SVA_F 1814 + 1037 1164 85365 54 50 0 73 chain 50543 chr13 115169878 + 50169527 50170158 L1PA8 5853 + 5222 5847 58620 342 1 0 41 7 6 68 1 0 9 1 0 52 2 1 19 2 1 86 chain 77080 chr13 115169878 + 50173157 50174126 LTR5_Hs 974 + 0 974 44926 169 1 0 116 0 1 181 0 1 188 1 0 163 8 15 27 12 10 103 chain 2804 chr13 115169878 + 50209873 50209905 MER51A 677 - 446 478 228684 32 chain 9126 chr13 115169878 + 50211830 50211980 MER67C 710 + 25 173 164939 44 1 2 6 1 0 33 5 4 12 1 0 47 chain 25602 chr13 115169878 + 50240574 50240876 AluYk12 309 + 10 309 101720 53 3 1 240 1 0 5 chain 20569 chr13 115169878 + 50257394 50257694 AluY 311 + 14 299 125396 72 1 0 47 1 0 10 19 17 73 0 2 52 13 0 12 chain 43030 chr13 115169878 + 50266581 50267133 PABL_A 660 + 76 660 65384 31 1 0 294 9 28 74 1 0 79 0 2 34 1 14 28 chain 17425 chr13 115169878 + 50301765 50302083 HSMAR2 1300 + 24 340 134446 21 4 5 10 0 2 35 9 10 32 24 17 97 15 17 20 1 0 50 chain 14550 chr13 115169878 + 50304757 50304912 L1PA3long 6157 - 0 155 142730 155 chain 4500 chr13 115169878 + 50313909 50313966 Charlie10b 242 - 77 134 200785 57 chain 145242 chr13 115169878 + 50335337 50337010 SVA_C 1631 + 0 1624 25287 17 10 4 36 1 3 792 44 0 406 1 0 366 chain 1891 chr13 115169878 + 50336193 50336219 SVA_C 1631 + 812 838 149338 26 chain 3545 chr13 115169878 + 50372064 50372105 MLT1A1 405 + 174 215 214636 41 chain 7080 chr13 115169878 + 50392963 50393129 Tigger3a 397 - 90 257 176890 14 0 61 11 60 0 81 chain 3835 chr13 115169878 + 50409657 50409943 L1MC3 1789 - 210 450 209845 10 6 0 25 210 170 35 chain 32423 chr13 115169878 + 50417039 50417472 MER4A1 472 + 0 451 80162 140 0 17 237 20 21 36 chain 28498 chr13 115169878 + 50430065 50430548 LTR22B 500 - 0 497 91189 10 0 2 7 0 1 10 6 5 207 1 3 46 55 70 32 25 21 79 1 0 4 chain 11828 chr13 115169878 + 50435982 50436160 MER11A 1151 + 0 257 152914 77 8 99 54 12 0 27 chain 5112 chr13 115169878 + 50443349 50443412 MER5A 189 - 125 189 193951 45 0 1 18 chain 27578 chr13 115169878 + 50448126 50448846 LOR1b 457 + 43 457 94410 38 0 8 59 311 0 27 3 0 23 10 9 223 7 8 19 chain 23894 chr13 115169878 + 50448244 50448534 AluY 311 + 8 299 110931 121 1 2 168 chain 466980 chr13 115169878 + 50453938 50460012 L1PA8 5853 + 108 5853 8148 194 22 26 4 1 0 106 7 0 10 0 7 467 13 1 43 319 0 257 0 1 794 13 0 13 1 2 1061 0 3 562 0 2 130 0 13 563 1 2 289 0 16 102 0 6 230 3 0 70 1 3 430 0 7 40 1 0 47 2 0 69 2 1 14 49 0 43 0 17 7 1 0 93 chain 5778 chr13 115169878 + 50463779 50463850 HY4 93 - 9 79 187366 44 1 0 26 chain 29559 chr13 115169878 + 50463862 50464423 Tigger3b 1229 + 279 865 86381 11 2 1 25 5 20 42 11 12 148 1 0 16 1 0 14 4 6 8 0 4 36 3 7 55 15 5 14 0 9 53 70 73 27 chain 20821 chr13 115169878 + 50472632 50472915 AluSp 311 + 10 298 124538 26 4 5 74 0 3 117 4 5 58 chain 7772 chr13 115169878 + 50482772 50482866 HY4 93 - 0 93 172466 53 1 0 40 chain 20737 chr13 115169878 + 50482886 50483228 Tigger3b 1229 + 304 661 124828 15 0 3 5 9 6 45 32 33 143 1 0 15 0 3 7 8 16 21 0 4 41 chain 26377 chr13 115169878 + 50495185 50495543 THE1C 375 + 0 360 98505 68 3 4 108 0 1 4 13 13 162 chain 33403 chr13 115169878 + 50512446 50512870 MER57A1 433 - 0 433 78561 62 0 8 78 5 6 279 chain 120256 chr13 115169878 + 50522211 50524231 L1PB1 5432 + 3457 5357 30961 85 6 11 35 0 17 48 0 5 70 12 15 113 5 9 59 1 3 164 1 0 23 305 0 380 29 32 106 4 0 13 1 182 271 1 5 11 5 0 20 1 0 12 1 0 10 7 3 9 2 0 52 2 1 16 1 0 34 11 9 16 2 0 6 16 6 18 3 1 5 1 0 14 2 0 11 chain 31866 chr13 115169878 + 50525861 50526260 MER41A 554 - 149 554 81070 312 15 20 22 0 1 50 chain 21159 chr13 115169878 + 50557076 50557347 AluSc5 308 + 0 287 123345 48 9 25 214 chain 24716 chr13 115169878 + 50564258 50564558 AluSp 311 - 1 299 106350 178 3 0 37 0 1 82 chain 17039 chr13 115169878 + 50579911 50580144 AluSp 311 - 71 305 135497 26 2 1 148 14 16 43 chain 23124 chr13 115169878 + 50605127 50605447 AluY 311 + 0 304 115021 46 36 19 67 0 1 171 chain 26049 chr13 115169878 + 50657420 50657707 AluSc 308 - 14 301 99828 287 chain 2658 chr13 115169878 + 50669133 50669175 L1MB3 1562 - 10 51 230915 29 2 1 11 chain 9218 chr13 115169878 + 50675460 50675661 Tigger4a 237 + 0 237 164469 25 0 8 44 61 99 8 10 0 53 chain 4731 chr13 115169878 + 50691827 50691881 L1MB2 1706 + 1637 1691 198153 54 chain 29113 chr13 115169878 + 50693280 50693585 AluYf4 310 - 5 310 88499 305 chain 21898 chr13 115169878 + 50695476 50695741 AluSc8 310 + 12 281 120631 119 0 4 146 chain 155058 chr13 115169878 + 50739490 50741243 L1PA6 6164 + 4406 6162 23973 242 0 1 156 0 1 1020 0 1 335 chain 22242 chr13 115169878 + 50752094 50752406 AluJb 308 + 0 304 119159 126 1 2 5 1 0 18 11 5 138 2 0 10 chain 558650 chr13 115169878 + 50754431 50760463 L1PA2 6032 - 0 6029 435 1579 1 0 2262 1 0 1279 1 0 909 chain 3434 chr13 115169878 + 50786238 50786275 MER4E1 777 + 663 700 216512 37 chain 4676 chr13 115169878 + 50804830 50804887 MER5B 177 + 50 107 198800 57 chain 24378 chr13 115169878 + 50806863 50807196 THE1A 353 + 0 342 108204 84 2 1 24 4 13 80 1 0 113 1 3 24 chain 127440 chr13 115169878 + 50807215 50808783 THE1A-int 1579 + 0 1579 28704 113 0 3 386 22 18 29 5 8 326 0 3 104 1 0 79 6 13 497 chain 26985 chr13 115169878 + 50808783 50809447 THE1A 353 + 0 353 96333 106 5 4 88 1 0 28 309 0 127 chain 16244 chr13 115169878 + 50824847 50825092 AluJr4 308 - 41 287 137637 132 3 0 5 27 31 78 chain 93756 chr13 115169878 + 50830503 50831574 L1PA6 6164 + 5090 6161 38420 1071 chain 46532 chr13 115169878 + 50861896 50862658 L1PB1 5432 - 10 777 61567 18 1 0 12 1 0 22 1 0 24 2 0 11 12 9 18 50 92 48 2 0 9 5 1 14 1 0 9 1 0 12 38 22 299 5 0 147 chain 9627 chr13 115169878 + 50865953 50866091 MSTB 430 - 306 430 162456 7 14 0 117 chain 414774 chr13 115169878 + 50868438 50873467 L1PA7 6471 - 1 4987 9677 189 1 0 149 0 1 340 7 6 82 6 5 64 0 1 5 0 7 12 28 2 658 1 0 270 0 8 265 3 0 282 2 0 121 1 0 3 3 0 164 6 0 306 2 1 26 1 0 801 2 1 59 19 1 122 0 2 415 6 9 417 0 1 191 chain 93928 chr13 115169878 + 50905283 50906305 L1PA3long 6157 - 0 1023 38371 845 0 1 177 chain 19035 chr13 115169878 + 50917551 50917783 L1PA6 6164 + 5924 6156 130015 232 chain 11927 chr13 115169878 + 50919134 50919285 L1MB2 1706 - 134 285 152488 151 chain 12416 chr13 115169878 + 50924938 50925094 MLT1B 390 - 0 156 150571 156 chain 121931 chr13 115169878 + 50970547 50971969 LTR12C 1709 + 0 1709 30403 491 0 6 153 0 278 184 1 0 4 4 2 29 0 1 69 7 11 178 0 2 153 1 0 148 chain 8442 chr13 115169878 + 50994598 50994704 AluJo 314 - 22 132 168607 17 1 5 88 chain 26640 chr13 115169878 + 51003491 51003867 THE1B 368 - 0 368 97509 139 20 12 15 0 1 27 6 5 169 chain 32711 chr13 115169878 + 51006662 51007048 L1PA7 6471 + 6081 6467 79668 386 chain 7466 chr13 115169878 + 51020495 51020579 AluJr 308 + 32 116 174366 84 chain 2484 chr13 115169878 + 51034006 51034049 MIRb 242 + 92 137 233271 12 6 8 25 chain 111803 chr13 115169878 + 51045163 51046408 L1PA4 6152 - 1391 2630 33694 54 9 1 221 0 2 961 chain 122762 chr13 115169878 + 51046408 51047785 L1PA4 6152 + 4764 6136 30128 335 0 1 136 6 0 900 chain 11874 chr13 115169878 + 51074776 51074929 MSTB-int 1649 - 0 150 152729 112 1 0 22 2 0 16 chain 543762 chr13 115169878 + 51077188 51083305 L1PA4 6152 - 14 6140 2240 135 1 0 489 0 1 1831 2 0 50 0 4 325 0 3 1096 0 4 964 1 0 849 0 1 374 chain 175207 chr13 115169878 + 51119953 51121898 L1PA4 6152 + 4226 6152 21433 1919 19 0 7 chain 92907 chr13 115169878 + 51128512 51129549 L1P1 4361 - 566 1604 38684 621 1 2 415 chain 79862 chr13 115169878 + 51129549 51130417 L1PA3long 6157 + 5289 6157 43617 868 chain 58371 chr13 115169878 + 51202530 51203207 L1PA5 6144 - 13 691 53764 141 0 1 536 chain 17610 chr13 115169878 + 51221139 51221367 L1PA8 5853 - 0 224 133965 93 1 0 19 2 1 52 1 0 9 1 0 50 chain 28730 chr13 115169878 + 51234008 51234315 AluYa5 310 - 3 310 90207 180 0 1 30 1 0 96 chain 42079 chr13 115169878 + 51295056 51295600 MLT2A2 560 + 0 560 66519 70 1 3 166 1 0 160 3 14 111 0 4 32 chain 30877 chr13 115169878 + 51303473 51304021 L1PA15 4387 - 35 558 82722 19 11 6 12 3 1 44 27 24 27 17 12 22 2 1 54 1 0 25 2 1 34 14 10 127 1 0 43 8 6 55 chain 20404 chr13 115169878 + 51304029 51304361 Tigger2 2703 - 55 403 125883 17 2 3 10 31 34 13 1 0 75 1 0 23 1 5 121 0 1 8 0 9 29 chain 114512 chr13 115169878 + 51326578 51328003 LTR12C 1709 - 0 1709 32943 84 1 0 67 1 0 330 0 4 96 10 8 10 1 0 76 0 2 18 0 278 468 10 12 201 5 8 47 chain 518844 chr13 115169878 + 51342426 51348537 L1PA6 6164 - 2 6164 5285 174 0 1 652 0 1 4 2 0 18 1 0 457 6 7 185 0 1 188 0 15 816 1 5 116 0 1 203 2 1 41 0 2 7 0 3 74 0 1 4 1 0 98 0 1 2262 0 17 297 4 11 18 0 1 480 chain 4767 chr13 115169878 + 51377601 51377665 MER33 330 + 6 69 197731 59 1 0 4 chain 20339 chr13 115169878 + 51400002 51400230 L1PA5 6144 - 5 233 126109 228 chain 8558 chr13 115169878 + 51403200 51403325 MER30 238 + 127 238 167974 8 17 0 62 0 3 38 chain 87484 chr13 115169878 + 51405974 51407022 L1PA7 6471 - 2354 3408 40467 174 0 1 229 1 0 101 0 1 58 0 4 452 0 1 33 chain 196705 chr13 115169878 + 51407022 51409327 L1PA7 6471 + 4146 6467 19450 34 0 1 482 0 8 313 0 1 438 1 0 107 0 1 90 0 3 79 5 0 472 7 6 251 0 9 26 chain 18582 chr13 115169878 + 51424743 51424997 L1MA4 2864 + 2235 2485 131282 39 0 1 4 1 0 23 1 0 32 9 6 145 chain 341960 chr13 115169878 + 51431019 51435621 L1PA11 4918 + 8 4578 11833 6 1 0 28 2 0 37 3 0 33 4 3 13 2 0 15 0 1 36 1 0 33 2 0 5 2 1 206 0 1 29 24 14 7 0 3 936 10 7 181 8 12 196 2 3 113 0 9 11 19 5 139 0 1 455 1 0 262 18 14 34 10 14 160 0 2 16 34 35 30 0 1 120 5 20 253 0 1 4 3 2 128 0 1 22 2 0 227 0 1 79 0 1 186 0 1 7 14 0 159 1 0 66 2 1 10 0 3 58 17 15 8 1 0 20 4 0 9 31 22 15 1 0 13 2 0 11 chain 3579 chr13 115169878 + 51448851 51448936 L1ME1 1623 - 101 173 213994 19 29 16 37 chain 39843 chr13 115169878 + 51468416 51468950 MER50 708 + 142 685 69546 223 2 1 11 18 26 78 1 0 188 0 3 13 chain 29541 chr13 115169878 + 51475219 51475529 AluYa5 310 - 0 310 86473 310 chain 18569 chr13 115169878 + 51518505 51518754 L1PA8 5853 + 5608 5853 131305 79 2 0 53 2 1 19 1 0 93 chain 93777 chr13 115169878 + 51531342 51532767 L1PA16 3655 - 36 1439 38415 15 5 0 8 37 18 89 7 4 195 3 1 40 26 16 32 2 1 67 0 8 27 3 0 124 3 4 46 4 3 19 6 9 60 9 22 61 6 5 69 8 7 432 1 0 21 chain 24587 chr13 115169878 + 51537312 51537599 AluSp 311 - 24 311 107052 287 chain 3052 chr13 115169878 + 51538544 51538579 MIR 256 - 47 82 223953 35 chain 30214 chr13 115169878 + 51551946 51552263 AluYb8 318 - 1 318 84152 317 chain 8112 chr13 115169878 + 51554584 51554681 THE1C 375 + 212 309 170430 97 chain 546374 chr13 115169878 + 51556190 51562206 L1PA2 6032 + 0 6027 1896 72 1 2 183 1 0 661 1 0 1532 1 0 1212 10 1 1163 0 18 1022 1 6 6 5 0 96 0 4 49 chain 22813 chr13 115169878 + 51604369 51604657 AluSc8 310 + 2 300 116518 44 0 1 79 1 3 144 0 7 20 chain 355351 chr13 115169878 + 51646984 51651255 L1PA6 6164 - 14 4297 11464 651 1 2 178 0 5 17 0 4 300 0 1 196 0 1 429 7 14 149 28 15 93 0 1 396 2 0 270 2 1 237 0 1 56 5 6 371 1 2 168 0 4 142 0 3 112 3 0 78 0 1 379 chain 163803 chr13 115169878 + 51651255 51653059 SVA_D 2077 + 4 2077 22832 913 0 264 32 0 1 174 0 1 65 0 1 330 0 3 271 1 0 18 chain 24101 chr13 115169878 + 51663477 51663829 THE1D 372 + 0 355 109739 160 0 1 8 22 25 138 12 11 12 chain 2562 chr13 115169878 + 51667527 51667634 MER3 215 - 5 54 232348 26 67 9 14 chain 23870 chr13 115169878 + 51668943 51669303 THE1B 368 + 0 368 111084 128 12 16 25 1 0 29 10 17 13 9 8 4 1 0 128 chain 19576 chr13 115169878 + 51676841 51677182 THE1D 372 - 0 355 128444 27 1 0 40 1 2 90 68 69 22 0 3 44 0 10 48 chain 39938 chr13 115169878 + 51701946 51702469 MER41A 554 + 0 533 69410 87 8 9 203 0 7 123 5 6 40 5 6 52 chain 49046 chr13 115169878 + 51702871 51703442 LTR22 571 + 0 571 59714 571 chain 95266 chr13 115169878 + 51705206 51706814 MER41-int 2638 + 1305 2621 38015 15 2 1 6 1 0 51 1 8 114 0 1 5 8 26 20 0 1 35 1 0 80 1 0 91 32 0 86 0 5 23 3 0 38 2 0 95 1 0 97 1 0 249 0 3 21 298 0 75 1 2 37 1 5 29 3 15 41 3 0 41 chain 45047 chr13 115169878 + 51706838 51707394 MER41A 554 + 0 554 62998 196 2 0 358 chain 41806 chr13 115169878 + 51713569 51714105 MER41A 554 + 0 533 66889 86 9 10 172 4 0 265 chain 190218 chr13 115169878 + 51717123 51719680 MER4-int 2692 + 78 2686 20025 20 3 1 6 1 0 13 3 1 82 2 1 351 0 9 19 10 25 111 0 2 43 0 4 176 1 0 163 0 2 46 2 1 24 2 1 207 5 21 23 5 4 31 2 3 5 0 1 98 0 1 179 1 3 136 2 0 32 5 6 139 0 1 36 0 1 35 5 6 40 2 0 84 2 0 3 1 0 7 0 5 176 5 0 24 4 7 74 1 11 103 2 0 5 chain 36104 chr13 115169878 + 51720539 51721004 MER4A1 472 - 0 472 74761 230 9 16 226 chain 22955 chr13 115169878 + 51733941 51734296 THE1A 353 - 0 353 115827 38 4 5 52 4 3 14 0 1 5 9 8 33 1 0 81 8 7 106 chain 11376 chr13 115169878 + 51740363 51740485 L1PA2 6032 + 5654 5776 154793 122 chain 23002 chr13 115169878 + 51740486 51740740 L1PA2 6032 + 5776 6032 115609 240 0 2 14 chain 16403 chr13 115169878 + 51743203 51743452 MSTA-int 1630 + 0 248 137201 33 1 2 34 25 23 156 chain 40245 chr13 115169878 + 51744001 51744450 LTR7 482 + 0 482 68950 249 1 32 101 0 2 98 chain 260567 chr13 115169878 + 51744452 51747549 HERVH-int 3825 + 0 3120 15665 350 1 0 135 2 0 15 44 38 32 1 0 10 1 0 19 1 0 5 28 0 15 0 37 41 1 0 65 0 3 7 0 8 449 15 0 456 4 31 517 0 4 883 chain 41470 chr13 115169878 + 51748691 51749142 LTR7 482 + 0 482 67324 264 0 31 187 chain 35832 chr13 115169878 + 51768871 51769395 MER1A 529 - 1 529 75089 57 12 14 285 1 2 72 21 26 31 20 16 25 chain 5765 chr13 115169878 + 51778930 51779008 MSTB1 431 + 334 412 187480 66 1 0 4 0 1 7 chain 10620 chr13 115169878 + 51832042 51832426 MLT1C 463 - 24 406 157730 31 0 1 53 132 135 28 3 10 32 76 63 29 chain 45072 chr13 115169878 + 51878674 51879227 MER41A 554 + 0 554 62968 430 0 1 123 chain 2587 chr13 115169878 + 51973651 51973749 L1ME3A 1206 - 322 423 231847 18 54 57 26 chain 20580 chr13 115169878 + 51974081 51974390 MER1B 344 + 37 344 125360 15 1 0 158 2 0 10 4 0 42 30 35 47 chain 17251 chr13 115169878 + 51980924 51981155 MER30 238 + 0 238 134922 107 4 15 73 4 0 43 chain 26264 chr13 115169878 + 51989484 51989845 THE1B 368 + 0 356 98962 76 9 8 88 6 4 24 2 0 156 chain 11257 chr13 115169878 + 52044043 52044181 7SLRNA 320 + 159 297 155202 138 chain 6240 chr13 115169878 + 52049389 52049539 L1MA5A 2387 - 17 157 183250 6 0 5 16 8 13 13 41 21 66 chain 350984 chr13 115169878 + 52056399 52060536 L1PA7 6471 - 10 4164 11569 41 0 9 96 1 0 22 0 4 157 0 1 48 9 11 253 0 1 108 1 0 7 1 0 82 1 0 73 1 0 9 2 1 333 1 0 1241 0 1 131 1 0 253 0 5 71 4 0 606 0 3 255 1 2 55 1 3 272 chain 29241 chr13 115169878 + 52063053 52063359 AluYb8 318 + 0 306 87840 306 chain 536684 chr13 115169878 + 52083875 52089972 L1PA5 6144 - 21 6141 3353 317 1 2 270 1 0 853 0 11 82 0 1 116 1 0 126 0 4 962 0 1 207 0 1 77 0 1 862 0 1 355 0 1 136 0 1 1305 0 2 426 chain 480261 chr13 115169878 + 52100959 52106649 L1PA6 6164 + 428 6162 7724 21 8 0 120 1 0 230 1 18 674 5 6 310 0 2 6 0 1 138 0 14 148 0 3 212 1 2 377 0 3 320 0 1 156 0 2 504 1 0 72 11 13 6 0 1 703 1 0 809 0 1 14 0 1 78 0 2 117 0 1 317 0 1 171 6 7 152 chain 136253 chr13 115169878 + 52119467 52121075 L1PA7 6471 - 1 1620 26789 5 2 0 32 0 9 513 0 1 286 0 3 770 chain 535441 chr13 115169878 + 52141171 52147619 L1PA4 6152 + 10 6148 3527 423 1 0 610 0 2 802 0 5 1247 0 1 986 0 2 263 0 4 133 0 2 135 324 0 4 1 0 912 1 0 497 0 1 109 chain 54909 chr13 115169878 + 52156728 52157475 MER4E 760 - 0 760 55764 384 5 7 113 0 5 75 22 25 33 14 18 29 2 0 53 1 2 16 chain 13101 chr13 115169878 + 52166132 52166280 L1PA4 6152 + 5995 6143 147840 148 chain 3342 chr13 115169878 + 52201974 52202027 MER52A 1651 - 716 761 218200 17 8 0 28 chain 4486 chr13 115169878 + 52211157 52211212 MER5A1 166 + 102 157 200963 55 chain 41648 chr13 115169878 + 52211670 52212198 MER41C 542 - 0 542 67092 206 0 2 17 4 6 82 0 5 86 9 13 75 0 1 49 chain 8067 chr13 115169878 + 52222759 52222856 L1PA8A 6298 + 6193 6291 170662 14 0 1 83 chain 443609 chr13 115169878 + 52223576 52228685 L1PA4 6152 - 14 6150 8934 151 14 8 147 0 1015 459 0 4 230 0 1 950 3 2 388 0 16 217 4 0 1391 0 3 214 4 0 412 0 2 303 0 1 222 chain 123316 chr13 115169878 + 52244885 52247062 L1PB1 5432 - 10 1836 29941 18 2 1 12 2 1 20 1 0 9 33 35 18 40 27 45 18 16 52 2 0 9 5 1 14 9 6 22 9 13 388 1 0 6 3 6 24 0 3 43 18 14 48 37 17 4 1 0 99 322 7 63 0 1 177 0 1 133 0 1 277 0 1 32 0 1 4 1 0 6 0 3 11 2 0 137 chain 4445 chr13 115169878 + 52264033 52264082 Charlie1b 519 + 74 123 201404 49 chain 555620 chr13 115169878 + 52264333 52270459 L1PA3long 6157 - 0 6153 760 1793 0 4 1207 0 12 1334 0 2 1240 0 7 186 0 2 366 chain 260044 chr13 115169878 + 52283636 52286589 L1PA5 6144 + 3196 6144 15693 486 2 0 1594 1 0 160 0 1 284 7 0 301 0 4 118 chain 28625 chr13 115169878 + 52290546 52290848 AluYa5 310 + 0 301 90632 132 1 0 169 chain 5669 chr13 115169878 + 52366837 52366955 L1MB1 2102 - 612 710 188394 59 35 15 24 chain 6206 chr13 115169878 + 52402976 52403077 MER45B 1037 + 335 436 183541 16 1 0 13 10 11 61 chain 7315 chr13 115169878 + 52464790 52464881 LTR54B 464 + 0 91 175336 91 chain 41480 chr13 115169878 + 52468817 52469343 MER1A 529 - 0 529 67309 64 5 8 457 chain 40454 chr13 115169878 + 52505252 52505781 L1PA7 6471 + 5964 6467 68657 46 0 1 72 0 4 60 32 0 291 0 1 28 chain 24417 chr13 115169878 + 52537598 52537895 AluSq10 312 + 9 306 107991 297 chain 63676 chr13 115169878 + 52550684 52551964 Tigger3b 1229 - 14 1150 51156 29 3 0 7 12 14 20 1 2 6 0 25 10 25 0 154 1 0 113 3 8 58 7 0 6 179 9 43 1 2 11 0 127 11 107 0 9 9 0 171 0 1 8 0 2 36 1 0 34 6 12 43 1 7 77 0 1 27 0 2 51 chain 543662 chr13 115169878 + 52556763 52563203 L1PA7 6471 + 2 6466 2246 105 0 10 698 4 7 228 0 1 43 0 2 318 1 0 81 2 1 251 0 1 345 1 0 209 1 0 338 3 4 43 0 1 551 0 4 254 1 0 640 3 0 528 0 8 71 9 8 443 0 4 124 0 1 374 0 2 758 5 0 8 chain 32956 chr13 115169878 + 52579954 52580352 MER9a2 513 + 0 402 79285 200 0 3 113 1 2 84 chain 24364 chr13 115169878 + 52589608 52589950 THE1A 353 + 0 341 108296 110 2 1 35 0 1 17 1 0 29 6 5 62 2 3 78 chain 127996 chr13 115169878 + 52589964 52591536 THE1A-int 1579 + 1 1573 28568 169 1 0 5 0 1 78 0 1 179 1 0 4 0 1 137 1 0 235 3 4 457 1 0 301 chain 26820 chr13 115169878 + 52591541 52591897 THE1A 353 + 0 353 96910 111 1 0 91 1 0 7 3 2 142 chain 29798 chr13 115169878 + 52618030 52618452 MLT2A1 477 + 0 467 85446 170 4 1 8 0 1 24 0 1 90 5 6 66 0 1 17 11 55 27 chain 14816 chr13 115169878 + 52623707 52623910 MER30 238 - 0 238 141893 30 0 2 7 0 3 73 4 16 70 1 19 18 chain 43360 chr13 115169878 + 52625793 52626459 MER4A 717 + 0 711 64979 41 9 15 198 0 7 9 0 5 29 0 1 14 0 3 48 0 40 82 67 45 148 0 4 15 0 1 6 chain 495395 chr13 115169878 + 52628644 52634085 L1PA3long 6157 + 573 6142 7106 208 0 128 914 0 1 137 0 1 371 0 1 1506 3 0 2302 chain 174964 chr13 115169878 + 52637164 52639274 SVA_D 2077 + 6 2077 21465 13 25 9 514 0 40 335 0 37 80 2 0 149 49 0 165 46 0 40 0 1 4 10 8 670 2 0 6 chain 194 chr13 115169878 + 52638285 52638331 SVA_D 2077 + 1008 1056 47665 28 0 2 18 chain 2409 chr13 115169878 + 52638496 52638539 SVA_D 2077 + 1094 1137 146133 9 1 0 29 0 1 4 chain 11540 chr13 115169878 + 52641427 52641587 MER61E 571 + 0 165 154145 21 1 2 31 0 3 69 2 3 36 chain 24796 chr13 115169878 + 52644513 52644868 THE1B 368 + 0 368 105910 22 0 1 21 5 20 10 10 11 87 1 0 23 2 0 98 1 0 75 chain 87137 chr13 115169878 + 52653456 52654501 SVA_D 2077 + 55 1184 40720 487 0 40 248 40 0 87 4 3 27 13 0 46 2 0 26 0 100 65 chain 2280 chr13 115169878 + 52654501 52655042 SVA_D 2077 + 1536 2077 47665 541 chain 22806 chr13 115169878 + 52657010 52657297 AluSc 308 + 8 293 116546 182 0 1 89 3 0 13 chain 45923 chr13 115169878 + 52681747 52682307 PABL_A 660 + 91 653 62111 109 8 7 230 1 2 119 0 1 51 0 1 42 chain 3576 chr13 115169878 + 52726300 52726504 L1MA7 2200 + 2011 2170 214030 20 36 29 24 96 59 17 1 0 10 chain 25845 chr13 115169878 + 52732014 52732301 AluSp 311 - 14 301 100674 287 chain 24199 chr13 115169878 + 52773884 52774165 AluY 311 + 16 298 109220 116 0 1 165 chain 3650 chr13 115169878 + 52780481 52780638 MER58B 340 + 139 304 212799 32 7 13 12 82 84 24 chain 92559 chr13 115169878 + 52787933 52789121 L1PA7 6471 - 6 1192 38716 6 2 0 34 6 7 4 1 0 103 1 4 682 0 1 21 18 4 121 0 5 165 0 5 24 chain 213718 chr13 115169878 + 52789121 52791657 L1PA7 6471 + 2724 5261 18243 91 1 0 580 0 1 101 0 1 1763 chain 10249 chr13 115169878 + 52794122 52794246 MER85 139 - 3 137 159374 37 0 10 87 chain 3366 chr13 115169878 + 52809025 52809073 MER96B 391 + 260 307 217756 31 1 0 16 chain 188405 chr13 115169878 + 52819941 52822083 L1PA5 6144 - 2 2123 20201 1120 1 0 117 13 0 56 0 1 54 10 2 771 chain 57099 chr13 115169878 + 52822134 52822800 L1P1 4361 - 3128 3796 54471 194 0 2 472 chain 317323 chr13 115169878 + 52828455 52832174 L1P1 4361 + 1 3720 12710 573 1 0 128 12 5 151 0 8 312 0 3 62 9 8 919 1 2 1543 3 0 5 chain 18805 chr13 115169878 + 52835475 52835675 L1PA2 6032 - 0 200 130659 200 chain 131457 chr13 115169878 + 52838227 52839851 L1PA8 5853 + 4211 5847 27764 158 0 1 623 0 1 13 0 2 228 7 8 243 2 0 120 2 0 37 0 4 19 3 12 60 5 4 16 16 15 72 chain 69432 chr13 115169878 + 52841515 52842648 L1PA11 4918 - 291 1419 48638 16 120 94 9 2 0 20 1 0 14 2 0 26 0 1 40 5 0 13 2 1 63 5 0 94 0 44 57 4 5 4 1 0 69 9 9 93 4 5 177 5 0 113 2 1 129 3 0 31 chain 555554 chr13 115169878 + 52843775 52849794 L1PA2 6032 - 0 6031 767 1802 0 4 3522 0 7 486 0 1 209 chain 18935 chr13 115169878 + 52856599 52856802 L1PA2 6032 + 5826 6029 130269 203 chain 4927 chr13 115169878 + 52915705 52915765 L1PA11 4918 + 113 171 195967 15 2 0 43 chain 31825 chr13 115169878 + 52915773 52916207 L1PA11 4918 + 4081 4502 81127 247 6 0 65 2 1 13 3 0 67 2 0 15 1 0 13 chain 22864 chr13 115169878 + 52958066 52958338 AluSp 311 + 11 301 116262 117 1 0 29 1 19 41 0 1 83 chain 21419 chr13 115169878 + 52962610 52962905 AluSp 311 - 9 301 122447 89 8 7 64 16 14 118 chain 7850 chr13 115169878 + 52974138 52974231 HY4 93 + 0 93 171997 93 chain 112572 chr13 115169878 + 52981339 52982780 LTR12C 1709 - 0 1709 33509 84 8 7 390 11 4 106 4 2 4 1 0 38 0 2 76 0 2 65 0 280 153 0 1 74 9 7 150 0 1 122 8 3 138 chain 23881 chr13 115169878 + 52991520 52991794 AluSp 311 - 38 311 111016 31 1 0 242 chain 24286 chr13 115169878 + 52996969 52997330 THE1B 368 + 0 368 108735 15 2 0 25 0 5 19 8 9 99 10 10 13 1 3 96 1 0 5 0 2 67 chain 21024 chr13 115169878 + 53000745 53000990 AluSc8 310 + 20 285 123837 11 0 17 84 0 3 150 chain 7208 chr13 115169878 + 53025221 53025357 L1MA3 4352 + 4221 4351 176008 38 2 0 23 8 6 19 8 7 14 1 0 23 chain 3849 chr13 115169878 + 53038100 53038147 Tigger4b 360 - 310 360 209656 6 0 3 41 chain 27523 chr13 115169878 + 53043732 53044023 AluYb8 318 - 20 311 94593 291 chain 32062 chr13 115169878 + 53057484 53058073 L1PA11 4918 - 289 837 80749 17 140 110 13 1 0 15 2 0 67 5 0 13 2 1 68 2 0 244 chain 6599 chr13 115169878 + 53058081 53058159 L1PA10 4194 - 3615 3693 180465 78 chain 17573 chr13 115169878 + 53096982 53097184 AluSg4 309 + 32 234 134070 202 chain 15789 chr13 115169878 + 53099891 53100122 L1MA2 4263 + 486 726 138982 7 2 0 38 10 21 174 chain 18628 chr13 115169878 + 53104082 53104284 L1PA2 6032 - 4 206 131140 202 chain 69409 chr13 115169878 + 53112131 53113128 L1PA11 4918 + 3499 4517 48645 31 3 0 136 1 0 101 5 0 183 4 5 93 9 9 69 1 0 4 4 5 57 0 44 94 5 0 63 2 1 13 5 0 40 0 1 26 2 0 14 1 0 19 2 0 10 chain 129683 chr13 115169878 + 53114920 53116536 L1PA8 5853 - 6 1638 28161 72 16 15 16 5 4 39 1 2 19 3 12 19 0 4 37 2 0 117 2 0 246 7 8 228 0 2 15 0 1 120 0 3 498 0 1 154 chain 18766 chr13 115169878 + 53119082 53119282 L1PA2 6032 + 5832 6032 130782 200 chain 316985 chr13 115169878 + 53122567 53126285 L1P1 4361 - 641 4360 12725 5 3 0 482 1 0 144 0 2 915 1 2 919 9 8 62 0 3 312 0 8 151 12 5 128 1 0 573 chain 60108 chr13 115169878 + 53131944 53132643 L1P1 4361 + 565 1266 52769 472 0 2 227 chain 189645 chr13 115169878 + 53132661 53134804 L1PA5 6144 + 4021 6144 20089 771 10 2 54 0 1 56 13 0 1239 chain 10249 chr13 115169878 + 53160463 53160587 MER85 139 + 2 136 159373 87 0 10 37 chain 213077 chr13 115169878 + 53163052 53165592 L1PA7 6471 - 1210 3747 18291 822 3 0 1043 0 1 580 1 0 91 chain 94067 chr13 115169878 + 53165592 53166788 L1PA7 6471 + 5279 6467 38317 190 0 5 125 7 4 14 8 1 7 3 0 842 chain 66809 chr13 115169878 + 53187435 53188403 L1MA1 4479 + 3212 4157 49727 39 1 0 12 5 0 120 0 5 7 8 0 123 4 0 197 0 1 5 1 0 18 2 0 87 1 0 20 2 0 13 1 0 21 1 7 60 1 0 5 3 0 78 2 1 47 3 2 27 2 0 35 2 1 8 1 0 6 chain 48976 chr13 115169878 + 53188404 53188934 L1PA3long 6157 + 5627 6157 59769 530 chain 5109 chr13 115169878 + 53198792 53198874 MER2 342 + 131 214 193979 37 4 6 36 1 0 4 chain 5815 chr13 115169878 + 53285877 53285973 L1MB3 1562 - 10 110 186996 29 1 0 41 10 15 15 chain 533472 chr13 115169878 + 53289490 53295879 L1PA7 6471 - 5 6464 3775 7 2 0 139 13 12 170 1 2 434 0 2 79 1 4 77 2 0 237 0 1 570 0 1 15 0 1 43 0 4 460 0 1 609 0 1 52 0 1 211 1 0 233 0 4 43 0 12 229 1 0 178 0 2 476 1 2 466 12 8 122 1 0 216 0 31 28 5 6 100 0 1 180 5 6 187 0 2 92 0 2 297 9 10 38 0 8 347 chain 75670 chr13 115169878 + 53303966 53304801 L1PA4 6152 - 1 843 45677 138 0 7 697 chain 14108 chr13 115169878 + 53309712 53309926 MER30 238 - 9 238 144183 88 15 1 17 0 23 70 11 17 13 chain 9926 chr13 115169878 + 53343093 53343220 MER41B 635 - 0 126 160946 122 1 0 4 chain 21245 chr13 115169878 + 53365162 53365435 AluSc 308 + 23 292 123036 19 0 1 239 5 0 10 chain 3067 chr13 115169878 + 53389056 53389091 LTR12C 1709 - 623 658 223627 35 chain 12792 chr13 115169878 + 53389120 53389306 LTR12C 1709 - 562 779 149093 29 3 50 104 17 1 33 chain 120158 chr13 115169878 + 53391595 53392987 SVA_B 1603 + 8 1600 31006 14 10 9 8 0 2 709 0 204 640 5 0 6 chain 8924 chr13 115169878 + 53400860 53400992 LTR12C 1709 + 772 919 166011 65 1 0 40 10 26 16 chain 8041 chr13 115169878 + 53410443 53410556 MER41B 635 + 513 628 170814 47 5 6 56 0 1 5 chain 6881 chr13 115169878 + 53474335 53474433 MER5A1 166 + 29 124 178341 81 6 3 11 chain 5718 chr13 115169878 + 53488373 53488435 MLT1D 503 + 55 117 187948 62 chain 3999 chr13 115169878 + 53510484 53510619 LTR16D 553 - 34 168 207401 48 72 71 15 chain 2844 chr13 115169878 + 53526707 53526755 MER77B 728 + 606 665 227956 31 6 17 11 chain 49377 chr13 115169878 + 53528013 53528656 L1PA8 5853 + 5210 5847 59464 354 1 0 44 2 0 41 9 10 19 2 1 7 1 0 54 2 1 19 1 0 87 chain 25340 chr13 115169878 + 53531527 53531978 LTR7B 505 - 10 505 103019 40 15 14 61 16 15 65 0 88 17 66 11 69 0 10 13 0 3 89 chain 28180 chr13 115169878 + 53533766 53534092 HERVH-int 3825 - 0 337 92376 39 0 1 271 0 10 16 chain 19351 chr13 115169878 + 53558412 53558724 THE1B 368 - 50 368 129069 76 1 0 12 49 56 7 1 0 53 0 1 113 chain 16083 chr13 115169878 + 53574270 53574567 THE1B 368 + 0 302 138105 107 34 35 27 1 0 6 17 19 6 0 5 4 1 0 4 0 1 16 1 0 12 2 1 59 chain 3612 chr13 115169878 + 53620946 53620989 MIRb 242 - 121 165 213448 21 0 1 22 chain 429195 chr13 115169878 + 53667822 53672459 L1PA2 6032 - 1 4639 9330 2217 0 1 2420 chain 51696 chr13 115169878 + 53679110 53679797 MER50 708 - 22 707 57819 117 0 1 381 1 3 80 5 9 36 17 8 50 chain 117755 chr13 115169878 + 53691313 53692898 THE1B-int 1605 - 5 1605 31877 56 0 12 201 7 9 359 13 14 286 0 8 84 4 1 114 1 26 185 44 14 231 chain 2597 chr13 115169878 + 53694601 53694639 MER135 159 + 53 91 231746 23 1 0 4 0 1 10 chain 113241 chr13 115169878 + 53737177 53738620 THE1A-int 1579 - 0 1579 33300 264 5 6 4 1 0 137 0 1 181 0 126 108 0 1 44 1 0 161 0 7 69 0 1 22 1 0 420 10 12 15 chain 36619 chr13 115169878 + 53749407 53749960 LTR12_ 688 + 0 673 74068 25 1 0 96 0 25 21 1 0 14 41 0 67 2 1 90 0 4 35 20 21 87 0 134 53 chain 24088 chr13 115169878 + 53821677 53822044 THE1B 368 + 0 368 109811 15 3 1 24 0 5 14 23 24 89 3 2 14 6 4 176 chain 87370 chr13 115169878 + 53841197 53842322 L1PA7 6471 - 1 1106 40626 138 23 23 202 2 0 125 14 1 77 15 3 179 1 4 14 1 4 106 1 2 227 chain 29903 chr13 115169878 + 53848973 53849291 AluYb8 318 + 0 318 85083 318 chain 27549 chr13 115169878 + 53852336 53852792 MLT2A2 560 - 0 558 94509 146 15 22 46 12 44 84 50 49 70 0 64 33 chain 12871 chr13 115169878 + 53852793 53852945 MSTA 426 - 267 419 148746 152 chain 132087 chr13 115169878 + 53871020 53872520 L1PA4 6152 + 4650 6152 27618 95 3 0 556 1 0 503 1 3 5 1 0 329 0 5 6 chain 27482 chr13 115169878 + 53879577 53879956 THE1C 375 - 0 375 94709 26 2 1 110 2 1 41 13 9 8 0 2 177 chain 9517 chr13 115169878 + 53879957 53880073 MSTB 430 - 314 430 162990 116 chain 3912 chr13 115169878 + 53900091 53900136 L1P1 4361 - 1268 1313 208660 45 chain 43866 chr13 115169878 + 53900136 53900622 L1PA3long 6157 + 5670 6156 64371 486 chain 9775 chr13 115169878 + 53946322 53946464 MER2 342 - 48 179 161720 120 11 0 11 chain 31317 chr13 115169878 + 53952159 53952584 MER1A 529 - 1 430 81962 61 11 14 129 5 6 219 chain 185870 chr13 115169878 + 53965296 53967527 L1PA7 6471 - 1 2927 20424 547 5 0 309 1 0 30 3 699 65 0 1 298 1 3 508 0 2 464 chain 3402 chr13 115169878 + 53973861 53973910 MER20 218 + 44 90 217035 39 3 0 7 chain 29781 chr13 115169878 + 54001622 54002053 L1PA16 3655 - 611 1046 85539 35 12 16 90 1 0 227 2 1 37 3 5 24 chain 90306 chr13 115169878 + 54011347 54012316 L1PA2 6032 - 2 971 39533 969 chain 24705 chr13 115169878 + 54012316 54012582 L1PA2 6032 + 4792 5058 103911 266 chain 115079 chr13 115169878 + 54025721 54027092 LTR12C 1709 - 0 1709 32763 59 0 131 291 0 4 90 0 4 11 2 0 8 1 0 74 0 200 436 5 6 94 1 2 299 chain 29190 chr13 115169878 + 54070403 54070729 L1PA4 6152 + 5825 6151 88102 326 chain 8728 chr13 115169878 + 54114807 54115057 L1PA11 4918 + 4413 4629 167046 45 2 0 17 2 0 13 1 0 20 4 0 9 8 3 10 13 9 15 1 0 9 63 48 18 chain 30205 chr13 115169878 + 54133964 54134281 AluYb8 318 + 0 317 84178 317 chain 16328 chr13 115169878 + 54137697 54137894 L1PA4 6152 - 1 197 137409 149 1 0 47 chain 77804 chr13 115169878 + 54157363 54158508 L1PB1 5432 - 33 1158 44614 8 1 0 21 1 0 24 2 0 14 1 0 5 2 0 18 28 17 12 1 0 110 22 16 8 1 0 8 1 0 28 0 7 261 1 0 4 14 15 52 0 1 144 2 0 120 3 4 228 chain 36457 chr13 115169878 + 54161034 54161522 L1PA8 5853 + 5372 5853 74288 190 1 0 46 2 0 69 26 24 39 2 1 19 1 0 93 chain 58560 chr13 115169878 + 54167541 54168324 LTR12 884 + 0 884 53669 169 37 0 12 0 25 47 1 116 12 2 0 2 1 0 61 0 1 439 chain 2584 chr13 115169878 + 54167717 54167747 LTR12 884 + 32 62 172087 30 chain 211479 chr13 115169878 + 54170892 54173217 L1PA3long 6157 - 1301 3627 18400 894 0 2 936 0 1 333 2 0 160 chain 118141 chr13 115169878 + 54173217 54174518 L1PA3long 6157 + 4859 6157 31681 112 4 0 1043 0 1 142 chain 69929 chr13 115169878 + 54193082 54193854 L1PA5 6144 - 1754 2527 48420 356 0 1 416 chain 154408 chr13 115169878 + 54193854 54195603 L1PA5 6144 + 4391 6144 24056 655 4 8 1090 chain 4111 chr13 115169878 + 54250584 54250627 tRNA-Gln-CAG 43 - 0 43 205770 43 chain 34798 chr13 115169878 + 54311408 54311822 L1PA5 6144 - 14 425 76482 155 11 9 136 1 0 111 chain 11990 chr13 115169878 + 54319708 54319929 L1PA8 5853 - 0 235 152247 92 2 1 19 41 57 5 1 0 61 chain 5553 chr13 115169878 + 54436815 54436887 MLT1B 390 - 3 78 189538 54 0 3 18 chain 4327 chr13 115169878 + 54448889 54449018 MER20 218 + 43 172 202863 15 51 56 43 6 1 14 chain 161100 chr13 115169878 + 54472010 54473824 L1PA5 6144 + 4316 6140 23175 978 0 5 343 0 1 348 1 5 144 chain 61839 chr13 115169878 + 54497716 54498778 L1PB1 5432 - 28 1002 51980 13 1 0 21 1 0 24 2 0 15 7 4 28 34 18 45 22 20 46 117 54 13 19 0 94 0 8 92 1 0 94 0 8 185 0 1 130 0 3 58 chain 50779 chr13 115169878 + 54498788 54499618 L1PB 1623 + 790 1586 58445 154 0 8 83 0 2 140 1 2 120 21 12 135 1 0 7 133 100 22 2 0 11 chain 29672 chr13 115169878 + 54524080 54524390 AluYa5 310 - 0 310 85947 310 chain 55969 chr13 115169878 + 54547496 54548221 MER11A 1151 - 302 1145 55141 13 0 26 129 0 2 140 0 1 94 0 1 114 0 2 33 10 6 60 1 0 50 8 0 24 0 99 49 chain 5634 chr13 115169878 + 54560590 54560673 MADE1 96 + 0 96 188721 37 1 17 33 3 0 9 chain 8279 chr13 115169878 + 54563917 54564007 L1PA7 6471 + 6368 6458 169518 90 chain 116242 chr13 115169878 + 54582625 54583960 L1PA5 6144 + 4768 6136 32359 597 10 12 55 0 2 433 0 1 216 0 28 24 chain 96706 chr13 115169878 + 54611964 54613098 L1P1 4361 - 33 1153 37644 23 1 0 57 20 9 5 1 0 86 1 0 940 chain 49009 chr13 115169878 + 54613098 54613656 L1PA5 6144 + 5583 6141 59741 558 chain 338095 chr13 115169878 + 54620323 54624101 L1PA3long 6157 + 2328 6149 11951 51 2 0 302 0 34 235 0 1 218 0 9 467 0 1 2503 chain 41282 chr13 115169878 + 54631190 54631665 L1PA3long 6157 + 5676 6143 67556 409 9 1 57 chain 23308 chr13 115169878 + 54675688 54675963 L1PA7 6471 - 10 285 114161 94 0 3 5 4 1 172 chain 30444 chr13 115169878 + 54701552 54701950 LTR7 482 - 0 482 83540 173 0 45 39 0 1 109 8 46 69 chain 274224 chr13 115169878 + 54703513 54706893 HERVH-int 3825 - 0 3825 14968 458 37 247 991 1 0 429 0 1 193 0 1 580 0 3 127 3 8 7 2 0 15 0 2 6 95 323 14 22 21 66 1 0 333 chain 27465 chr13 115169878 + 54706895 54707293 LTR7 482 - 0 482 94757 174 38 84 109 8 46 69 chain 20020 chr13 115169878 + 54708500 54708760 L1PA6 6164 + 5907 6162 127081 234 0 1 7 6 0 13 chain 34501 chr13 115169878 + 54731641 54732026 L1PA5 6144 - 5 390 76903 385 chain 5591 chr13 115169878 + 54740968 54741081 MER58A 224 + 43 153 189166 49 4 0 6 27 28 27 chain 508297 chr13 115169878 + 54793126 54799160 L1PA5 6144 + 0 6139 6299 134 12 26 101 0 20 418 7 6 113 0 29 228 1 4 82 17 8 77 1 0 59 6 24 1028 0 1 6 0 1 575 0 14 216 1 0 81 1 3 253 1 2 173 1 0 219 0 3 331 9 7 94 0 8 287 0 5 658 6 5 483 0 2 355 chain 25376 chr13 115169878 + 54822186 54822476 L1PA5 6144 + 5789 6132 102799 106 0 53 184 chain 80560 chr13 115169878 + 54840941 54841901 LTR5_Hs 974 - 0 974 43366 24 0 2 44 0 4 30 1 0 36 1 0 5 4 14 815 chain 33641 chr13 115169878 + 54842276 54842653 LTR7 482 + 0 410 78186 264 0 31 25 0 2 88 chain 192026 chr13 115169878 + 54842659 54844878 HERVH-int 3825 + 1210 3667 19867 422 0 1 52 4 31 1404 8 218 329 chain 29656 chr13 115169878 + 54851086 54851398 AluYb8 318 + 0 312 86044 312 chain 462023 chr13 115169878 + 54855525 54861779 L1PA8A 6298 - 7 6242 8331 94 6 0 8 2 9 300 0 10 300 0 2 70 9 9 374 0 1 849 0 1 385 0 2 109 0 1 265 0 1 82 3 4 50 19 20 564 3 0 217 1 0 18 1 3 29 3 5 67 0 2 433 2 3 102 3 0 70 4 5 182 10 0 12 23 32 127 0 1 21 4 0 183 0 3 34 13 1 10 0 12 58 0 22 25 0 4 292 4 0 31 6 5 262 1 0 75 6 4 9 2 0 15 2 0 41 4 0 36 8 0 22 12 11 31 2 0 9 46 37 11 1 0 5 2 0 15 2 0 19 2 0 12 2 1 9 1 0 12 24 17 19 3 0 12 4 0 7 1 0 3 1 0 8 5 0 14 chain 29668 chr13 115169878 + 54863375 54863686 AluYb8 318 - 7 318 85966 311 chain 3635 chr13 115169878 + 54870292 54870332 LTR33 499 - 50 90 213046 40 chain 241771 chr13 115169878 + 54878701 54881979 L1PBa1 4058 + 10 3368 16680 26 1 0 8 16 13 345 30 37 167 0 1 7 15 14 17 1 2 452 5 4 102 7 8 227 0 1 5 25 25 131 2 0 123 2 7 331 0 5 339 9 34 26 3 0 241 34 53 386 0 8 157 1 19 37 chain 10816 chr13 115169878 + 54881986 54882167 L1PB1 5432 + 5158 5323 156910 9 2 0 70 1 0 44 1 0 15 25 13 14 chain 24502 chr13 115169878 + 54885172 54885571 LTR7B 505 - 10 505 107535 41 14 13 76 1 0 46 0 1 6 0 126 9 53 11 51 0 10 13 0 3 89 chain 12091 chr13 115169878 + 54887496 54887757 LTR12D 1347 + 568 752 151835 125 102 25 34 chain 23450 chr13 115169878 + 54945299 54945877 L1PB3 3668 + 1592 2166 113382 58 1 2 8 1 0 78 0 3 81 1 2 72 244 236 34 chain 367242 chr13 115169878 + 54983045 54988098 L1PB1 5432 + 408 5420 11176 114 0 1 59 6 10 17 1 0 173 4 5 310 0 1 305 8 0 204 0 1 32 1 0 5 0 1 245 0 10 239 1 2 217 4 5 136 2 0 245 0 12 85 1 0 241 0 1 554 1 0 10 16 17 67 8 0 174 0 1 77 21 22 204 0 1 180 0 1 234 2 0 17 18 19 83 14 19 48 0 2 289 43 11 24 1 0 7 21 16 6 2 0 52 1 0 18 1 0 44 1 0 15 6 3 12 9 0 12 29 24 23 1 0 21 1 0 13 1 0 9 1 0 7 chain 10230 chr13 115169878 + 55019531 55019701 L1PA16 3655 + 3150 3317 159474 54 1 0 70 29 27 16 chain 22018 chr13 115169878 + 55028050 55028400 THE1C 375 - 0 371 120151 25 1 0 92 0 1 48 19 6 14 8 36 14 8 12 18 1 3 102 chain 29450 chr13 115169878 + 55033696 55034005 AluYa5 310 - 1 310 86845 309 chain 29073 chr13 115169878 + 55052556 55052862 AluYf4 310 + 0 306 88670 306 chain 97874 chr13 115169878 + 55065173 55066480 L1PB1 5432 + 3738 5103 37308 315 10 11 565 6 0 50 0 2 108 6 14 18 0 39 90 1 0 95 0 15 43 chain 6986 chr13 115169878 + 55066564 55066685 L1PB1 5432 + 5108 5220 177570 8 1 0 22 1 0 8 2 1 11 5 1 9 2 0 52 chain 3586 chr13 115169878 + 55066701 55066745 L1PB1 5432 + 5237 5281 213881 44 chain 5455 chr13 115169878 + 55066826 55066905 L1PB1 5432 + 5346 5422 190470 24 1 0 21 1 0 13 1 0 18 chain 14958 chr13 115169878 + 55094859 55095041 L1PA5 6144 - 1 181 141450 137 2 0 43 chain 25800 chr13 115169878 + 55130676 55131111 L1PA14 3548 + 3033 3453 100869 19 1 2 60 4 0 17 2 0 6 1 0 16 1 2 66 1 0 16 11 12 86 1 0 6 8 4 28 10 9 8 2 0 8 1 0 16 1 0 39 chain 77479 chr13 115169878 + 55146369 55147256 L1HS 6032 + 1 882 44746 140 19 15 98 4 2 626 chain 5429 chr13 115169878 + 55167534 55167599 L1PA15 4387 + 2314 2379 190718 65 chain 19530 chr13 115169878 + 55168665 55168926 L1PA8 5853 + 5595 5852 128569 16 2 0 71 1 0 18 0 1 39 2 1 19 1 0 92 chain 189026 chr13 115169878 + 55175331 55177692 L1PA7 6471 + 4190 6467 20143 67 0 1 128 0 1 568 6 5 383 0 2 245 101 9 22 1 0 102 0 7 406 0 1 322 2 0 8 chain 17784 chr13 115169878 + 55200882 55201082 L1PA5 6144 + 5937 6138 133462 166 0 1 34 chain 6386 chr13 115169878 + 55213181 55213256 MSTA 426 + 351 426 182131 75 chain 7567 chr13 115169878 + 55217845 55217937 L1PA3long 6157 + 5855 5947 173755 92 chain 9424 chr13 115169878 + 55225191 55225402 MLT1C 463 - 12 222 163433 99 78 77 34 chain 24871 chr13 115169878 + 55233610 55233968 L1PA8 5853 - 0 360 105512 32 0 9 51 2 1 19 2 1 52 1 0 4 9 8 68 2 0 44 1 0 71 chain 43680 chr13 115169878 + 55237161 55237714 MER41A 554 - 0 554 64592 156 1 2 396 chain 7773 chr13 115169878 + 55242349 55242443 MER30B 195 - 5 99 172464 94 chain 19161 chr13 115169878 + 55268503 55268935 MER52-int 3354 - 71 474 129646 6 1 0 30 1 0 19 1 0 5 1 0 7 1 0 23 28 22 10 3 2 37 10 8 4 1 0 38 1 0 5 2 0 10 2 0 9 3 1 20 15 14 29 2 0 42 1 0 11 16 14 22 2 1 14 chain 384421 chr13 115169878 + 55275014 55279758 HERV9-int 5642 + 0 4815 10632 459 5 0 140 4 5 6 2 0 106 6 0 132 2 0 231 83 0 22 20 10 10 12 13 117 2 1 16 0 165 257 1 0 626 2 3 523 0 1 221 1 0 606 1 4 31 0 9 67 1 2 1032 chain 355103 chr13 115169878 + 55288208 55292673 L1PA7 6471 - 2 5452 11472 155 5 6 604 0 4 84 0 2 275 9 17 4 1 0 1233 0 1 454 0 1 43 0 5 82 0 2 397 16 17 372 0 13 110 0 945 44 3 1 195 1 0 4 9 10 175 0 4 174 0 1 16 chain 22133 chr13 115169878 + 55296778 55297035 AluYk4 311 - 0 273 119656 80 0 15 97 0 1 80 chain 10248 chr13 115169878 + 55301084 55301303 THE1B 368 + 82 306 159382 23 12 13 51 1 0 21 17 24 11 26 24 57 chain 113736 chr13 115169878 + 55310620 55311976 LTR12C 1709 - 0 1709 33168 464 0 37 91 9 325 478 1 0 4 0 1 309 chain 117432 chr13 115169878 + 55314659 55315949 L1PA3long 6157 - 1 1293 31984 838 1 3 451 chain 3404 chr13 115169878 + 55332133 55332172 L1MC1 2226 - 398 437 217006 39 chain 48955 chr13 115169878 + 55345859 55346485 L1PA8 5853 - 5 626 59779 87 2 1 17 6 5 50 1 0 9 2 1 43 4 5 22 1 0 44 1 0 337 chain 29419 chr13 115169878 + 55346485 55346842 L1PA8 5853 + 4867 5222 86987 143 5 3 209 chain 91220 chr13 115169878 + 55360906 55362287 LTR12D 1347 - 0 1347 39228 14 5 3 47 0 4 47 0 8 142 1 0 31 3 2 27 27 0 310 21 14 26 119 0 105 0 31 203 1 37 198 3 4 6 0 43 45 chain 83718 chr13 115169878 + 55373264 55374370 LTR12C 1709 - 0 1709 42028 84 5 4 63 1 0 16 0 102 118 5 6 88 0 4 31 0 444 134 5 6 27 1 0 4 0 1 31 0 1 16 0 1 149 0 43 296 0 9 17 1 0 14 chain 111383 chr13 115169878 + 55385398 55386779 L1PA8 5853 - 0 1382 33841 93 1 0 19 9 12 40 1 0 10 2 1 9 0 1 57 9 7 40 1 0 49 1 0 431 0 2 75 0 1 322 0 1 212 chain 285261 chr13 115169878 + 55397133 55400653 L1PA7 6471 + 2937 6466 14338 27 0 2 564 1 0 4 0 1 306 1 2 326 2 0 104 1 0 74 0 1 424 0 3 22 0 1 161 2 1 30 1 2 610 0 1 11 0 3 162 2 1 393 1 0 134 14 16 143 chain 135668 chr13 115169878 + 55402530 55404200 LTR12C 1709 - 0 1709 26899 82 1 0 285 1 2 112 0 4 106 9 6 90 39 0 178 0 77 767 chain 1971 chr13 115169878 + 55403216 55403243 LTR12C 1709 - 728 755 142596 27 chain 7415 chr13 115169878 + 55410634 55410859 MLT1E 632 - 422 632 174682 59 46 0 15 31 49 9 1 0 19 21 35 24 chain 169923 chr13 115169878 + 55430161 55432071 L1P1 4361 + 2393 4319 22057 93 0 10 697 0 2 90 0 1 662 0 2 204 1 0 22 1 4 125 1 0 14 chain 24894 chr13 115169878 + 55432388 55432766 THE1D 372 + 0 372 105388 166 27 28 46 6 0 98 5 4 30 chain 29181 chr13 115169878 + 55450653 55451044 MLT2A1 477 + 4 397 88147 59 2 0 79 2 3 23 1 5 150 1 0 46 0 4 12 4 0 12 chain 20155 chr13 115169878 + 55456320 55456813 LTR21B 408 + 0 380 126660 37 1 0 26 11 6 33 1 0 20 0 4 114 1 0 4 155 50 31 26 22 33 chain 10420 chr13 115169878 + 55462282 55462445 MER30B 195 - 5 169 158598 43 3 0 31 1 2 17 0 1 14 5 8 37 1 0 11 chain 3651 chr13 115169878 + 55473113 55473179 MADE1 96 - 4 91 212783 24 13 34 29 chain 373194 chr13 115169878 + 55491272 55498036 L1PA6 6164 + 0 6156 10983 94 0 1 472 1 0 383 2100 1517 324 2 1 216 0 1 1077 4 1 547 13 1 8 0 1 200 5 8 18 0 1 314 12 11 118 0 5 78 1 0 442 15 0 88 2 0 60 17 16 153 chain 97108 chr13 115169878 + 55492225 55493335 HERVK9-int 4720 - 3260 4370 37541 1110 chain 61590 chr13 115169878 + 55512405 55513220 LTR12 884 + 0 884 52078 18 7 6 250 2 69 35 2 0 66 2 1 18 5 4 158 1 0 88 8 16 155 chain 53702 chr13 115169878 + 55515553 55516276 LTR30 714 - 0 714 56546 168 13 12 11 52 51 258 14 7 207 chain 6092 chr13 115169878 + 55516449 55516570 HERVFH21-int 991 - 389 503 184482 12 1 0 6 14 11 8 1 0 29 6 4 44 chain 9198 chr13 115169878 + 55516910 55517048 LTR12 884 - 642 764 164562 98 22 6 18 chain 19883 chr13 115169878 + 55522198 55522570 THE1B 368 + 0 368 127539 74 1 0 34 8 9 60 78 74 55 2 0 5 0 1 16 1 2 38 chain 119281 chr13 115169878 + 55578831 55580408 THE1B-int 1605 - 0 1605 31302 560 17 19 343 2 1 169 0 1 22 33 58 47 0 1 384 chain 91622 chr13 115169878 + 55583729 55584906 L1P2 5180 + 1730 2905 39083 217 0 2 62 10 11 12 1 0 169 0 2 122 5 1 572 2 0 5 chain 25275 chr13 115169878 + 55593516 55593892 L1PB2 3958 + 3464 3834 103346 81 12 11 61 1 0 61 5 4 66 3 1 25 3 2 58 chain 62622 chr13 115169878 + 55627765 55628549 LTR17 781 + 0 767 51623 119 0 9 151 4 5 15 10 0 21 0 1 5 0 1 40 1 0 39 18 0 361 chain 371601 chr13 115169878 + 55630245 55634768 HERV17-int 4347 + 12 4347 11038 15 1 0 53 1 0 27 7 5 27 1 0 156 5 0 109 15 16 254 0 1 49 0 2 443 0 3 303 3 0 739 0 12 360 1 2 724 0 4 99 0 2 445 203 0 177 0 1 244 0 1 62 chain 5492 chr13 115169878 + 55634227 55634285 HERV17-int 4347 + 3867 3925 187385 58 chain 64943 chr13 115169878 + 55635078 55635877 LTR17 781 + 0 781 50596 119 0 9 180 10 0 19 0 1 39 1 0 52 19 1 353 0 1 7 chain 27825 chr13 115169878 + 55637605 55637902 AluYa5 310 + 0 296 93606 132 1 0 164 chain 257582 chr13 115169878 + 55706041 55709014 L1PA5 6144 - 4 2977 15841 329 1 0 517 1 0 143 0 4 62 1 0 149 1 2 1261 2 0 506 chain 54853 chr13 115169878 + 55709014 55709641 L1PA5 6144 + 2522 3155 55798 14 0 2 235 0 4 378 chain 30114 chr13 115169878 + 55724022 55724338 AluYb8 318 + 0 316 84438 316 chain 11743 chr13 115169878 + 55759106 55759393 L1PB1 5432 + 5162 5424 153289 5 2 0 53 2 1 17 1 0 34 49 37 18 8 5 14 2 0 24 1 0 19 7 6 9 1 0 16 1 0 4 chain 512723 chr13 115169878 + 55846679 55852845 L1PA5 6144 - 12 6144 5902 139 5 0 6 1 6 175 0 1 1141 34 0 36 0 1 361 1 0 132 11 9 237 0 3 225 0 1 156 0 1 205 1 2 125 1 0 1467 2 1 211 7 0 77 1 6 172 0 1 11 1 0 55 13 4 534 7 0 80 3 4 409 8 22 116 chain 100112 chr13 115169878 + 55894375 55895461 L1PA2 6032 - 0 1085 36741 902 1 0 183 chain 122038 chr13 115169878 + 55925123 55926470 L1PA3long 6157 + 4808 6157 30373 1176 0 2 171 chain 77828 chr13 115169878 + 55927948 55928815 L1PA4 6152 - 7 875 44604 141 0 1 726 chain 6576 chr13 115169878 + 55946500 55946578 L1PA2 6032 + 5950 6026 180644 71 2 0 5 chain 4314 chr13 115169878 + 55956400 55956452 L1P 111 - 51 103 203039 52 chain 7500 chr13 115169878 + 55991923 55992023 LTR9B 643 + 447 561 174153 63 3 17 34 chain 24351 chr13 115169878 + 55996254 55996558 AluY 311 + 2 306 108367 130 0 1 104 5 4 65 chain 101980 chr13 115169878 + 56000059 56001497 L1PBa 3878 + 1619 3055 36270 77 1 2 205 1 0 5 3 8 35 32 31 76 0 4 75 1 16 18 0 1 539 4 0 4 18 0 333 4 0 7 chain 8518 chr13 115169878 + 56015460 56015569 MER47B 469 - 62 171 168205 109 chain 7516 chr13 115169878 + 56016229 56016395 L1MB1 2102 + 1904 2067 174062 31 7 5 47 9 10 10 21 20 11 1 0 29 chain 6149 chr13 115169878 + 56019619 56019797 MLT2B4 540 - 289 480 183996 18 86 100 61 1 0 12 chain 430884 chr13 115169878 + 56020543 56026489 HERVL-int 5654 + 0 5654 9293 738 8 0 146 7 6 27 0 1 20 5 2 5 0 3 17 293 10 149 5 7 203 0 2 451 0 1 117 0 2 84 8 9 11 0 5 457 0 1 666 18 19 397 1 2 5 2 0 8 0 2 100 3 0 5 1 4 114 1 2 291 0 12 135 39 40 188 9 10 761 0 1 141 1 0 237 42 10 30 chain 26147 chr13 115169878 + 56060220 56060797 L1PB1 5432 + 4868 5416 99416 208 39 38 24 1 0 6 1 0 14 26 20 40 16 18 30 105 86 18 1 0 23 1 0 11 1 0 12 chain 57525 chr13 115169878 + 56092859 56093494 L1PA4 6152 - 1324 1959 53941 635 chain 114218 chr13 115169878 + 56093494 56094751 L1PA4 6152 + 4892 6151 33022 1163 0 1 90 0 1 4 chain 75184 chr13 115169878 + 56131006 56131874 L1PA4 6152 + 5270 6143 45934 34 0 4 501 0 1 333 chain 21332 chr13 115169878 + 56145583 56145920 THE1B 368 + 0 368 122748 169 1 0 28 43 64 57 5 16 34 chain 36710 chr13 115169878 + 56152362 56152811 LTR7 482 - 0 482 73945 49 12 14 140 1 32 247 chain 293146 chr13 115169878 + 56154081 56157770 HERVH-int 3825 - 10 3825 13812 231 0 2 133 23 23 95 1 211 221 0 1 1182 4 31 462 15 0 444 1 0 49 2 1 7 0 20 25 21 1 20 1 0 25 24 0 12 1 0 15 7 1 16 69 0 7 1 0 10 1 0 38 5 0 309 0 11 212 chain 3237 chr13 115169878 + 56157121 56157187 HERVH-int 3825 - 3236 3356 196721 9 1 0 10 26 81 20 chain 37427 chr13 115169878 + 56157772 56158222 LTR7 482 - 0 482 72929 49 12 14 124 1 32 9 1 0 254 chain 416114 chr13 115169878 + 56160715 56166110 HERVL-int 5654 - 10 5448 9639 363 4 10 191 5 10 106 16 17 26 1 2 148 0 7 467 0 7 265 0 3 240 0 12 210 0 1 33 0 1 42 13 15 5 2 0 88 0 1 659 21 0 8 1 0 180 0 8 45 1 3 216 3 0 527 5 8 163 2 3 499 5 8 282 5 9 411 5 6 79 0 1 53 chain 27871 chr13 115169878 + 56166122 56166513 MLT2A1 477 - 92 477 93454 122 0 1 53 14 14 26 4 1 54 9 5 109 chain 6016 chr13 115169878 + 56198732 56198803 MER11A 1151 - 928 997 185085 24 2 0 45 chain 17013 chr13 115169878 + 56204057 56204361 L1PA15 4387 - 61 352 135558 11 3 1 42 13 10 45 10 5 27 1 0 45 21 20 16 1 0 69 chain 144149 chr13 115169878 + 56208537 56210287 L1PA8 5853 - 437 2198 25454 80 1 10 317 0 2 577 5 6 57 1 0 712 chain 31176 chr13 115169878 + 56210287 56210725 L1PA8 5853 + 5421 5853 82207 5 2 0 138 2 1 45 2 0 68 2 1 14 1 0 47 2 1 19 1 0 58 0 2 18 0 1 14 chain 40419 chr13 115169878 + 56229065 56229517 LTR7 482 - 0 482 68705 190 0 31 12 1 0 249 chain 296734 chr13 115169878 + 56230791 56234489 HERVH-int 3825 - 0 3825 13605 62 5 6 426 1 211 76 3 0 5 10 5 847 0 1 470 4 31 462 15 0 444 1 0 49 2 1 30 46 1 30 0 20 17 24 0 13 1 0 14 28 0 24 2 1 9 1 0 39 6 1 41 2 0 489 chain 2500 chr13 115169878 + 56233848 56233875 HERVH-int 3825 - 3142 3169 209046 27 chain 38901 chr13 115169878 + 56234491 56234937 LTR7 482 - 0 482 70864 173 0 5 9 0 31 264 chain 22990 chr13 115169878 + 56260546 56260856 AluY 311 + 18 311 115668 213 25 8 72 chain 3281 chr13 115169878 + 56263692 56263734 MER58A 224 + 163 205 219341 42 chain 4586 chr13 115169878 + 56281945 56282001 L1PB4 2604 + 2469 2525 199792 56 chain 3700 chr13 115169878 + 56304609 56304678 MER67D 511 - 365 438 211939 12 17 21 40 chain 28754 chr13 115169878 + 56304990 56305405 L1PA8 5853 - 0 482 90095 16 0 1 75 23 21 45 1 72 15 2 0 43 2 1 193 chain 279700 chr13 115169878 + 56307193 56310582 L1PA7 6471 + 3068 6467 14653 429 2 0 21 11 5 26 8 12 13 1 6 6 0 2 11 0 1 11 11 12 1339 1 0 640 0 4 14 2 1 191 0 2 621 0 1 31 chain 28528 chr13 115169878 + 56347755 56348146 MLT2A1 477 + 0 383 91061 167 8 5 186 5 0 25 chain 10220 chr13 115169878 + 56348311 56348430 MLT2A1 477 + 23 142 159513 119 chain 16439 chr13 115169878 + 56348460 56348668 MLT2A1 477 + 177 385 137095 208 chain 5371 chr13 115169878 + 56364994 56365076 MER2 342 + 163 248 191294 52 7 10 23 chain 21431 chr13 115169878 + 56369125 56369413 L1PA7 6471 - 3 292 122401 144 27 28 117 chain 107675 chr13 115169878 + 56386236 56387404 L1PA2 6032 - 312 1480 34808 1168 chain 29603 chr13 115169878 + 56387404 56387722 L1PA2 6032 + 5714 6032 86201 318 chain 18719 chr13 115169878 + 56389530 56390038 LTR4 552 - 0 516 130904 49 0 1 97 35 31 6 4 0 72 18 17 5 1 0 16 173 190 32 chain 3989 chr13 115169878 + 56410331 56410409 L1MB7 1623 + 694 773 207543 32 19 20 27 chain 119480 chr13 115169878 + 56437782 56439311 THE1A-int 1579 + 0 1573 31226 268 1 4 446 0 1 403 11 12 130 0 1 87 0 38 183 chain 12530 chr13 115169878 + 56439697 56439906 MER52-int 3354 - 688 909 150118 109 45 57 55 chain 16720 chr13 115169878 + 56480784 56481092 THE1B 368 + 0 333 136342 44 34 49 79 1 0 24 36 47 90 chain 443535 chr13 115169878 + 56522103 56527916 L1PA8 5853 + 53 5852 8935 19 3 1 9 1 0 13 35 14 53 1 0 4 6 7 127 20 8 41 29 0 7 1 29 548 0 1 282 0 1 491 1 0 26 0 2 102 0 3 57 6 7 112 2 1 105 0 5 698 0 1 61 3 6 444 5 6 151 1 0 379 1 2 115 0 2 31 2 1 498 0 1 41 0 1 418 0 1 20 9 4 57 5 6 12 2 3 136 0 1 159 5 18 163 1 0 43 3 1 70 2 1 11 1 0 10 2 1 39 23 21 91 chain 42063 chr13 115169878 + 56564936 56565495 L1PA8 5853 - 0 555 66541 20 1 3 69 2 1 19 2 1 40 1 2 9 2 1 8 2 1 70 2 0 45 1 0 266 chain 25521 chr13 115169878 + 56598171 56598493 AluY 311 + 0 305 102133 123 1 0 4 16 0 178 chain 40038 chr13 115169878 + 56614384 56614835 LTR7 482 + 0 482 69262 230 0 31 221 chain 309475 chr13 115169878 + 56614837 56618688 HERVH-int 3825 + 0 3825 13024 212 4 15 252 62 0 53 5 0 38 2 1 8 2 1 9 4 0 14 7 80 14 1 0 22 62 0 10 2 1 49 1 0 134 0 3 307 15 0 218 0 1 239 8 35 410 8 11 209 0 4 399 0 1 689 3 0 6 1 4 132 0 4 240 chain 39278 chr13 115169878 + 56619958 56620409 LTR7 482 + 0 482 70355 225 0 1 28 0 30 198 chain 6179 chr13 115169878 + 56633041 56633110 MLT2A1 477 - 0 69 183755 69 chain 35911 chr13 115169878 + 56684115 56684558 LTR7 482 + 0 477 75001 266 0 31 68 1 2 52 12 14 44 chain 38172 chr13 115169878 + 56686544 56686984 LTR7 482 - 0 482 71882 25 2 1 68 0 2 91 0 31 207 0 10 47 chain 297375 chr13 115169878 + 56688246 56691940 HERVH-int 3825 - 0 3825 13563 329 0 2 45 1 4 6 3 0 101 8 218 343 1 6 178 1 0 877 8 35 458 15 0 444 1 0 49 2 1 18 107 0 14 1 0 41 0 37 15 28 0 24 1 0 10 1 0 38 5 0 305 4 15 212 chain 39909 chr13 115169878 + 56691942 56692393 LTR7 482 - 0 482 69444 205 0 31 246 chain 43780 chr13 115169878 + 56714555 56715102 MLT2A2 560 - 2 560 64477 141 0 11 406 chain 8154 chr13 115169878 + 56742213 56742308 MSTA 426 - 68 163 170199 95 chain 348458 chr13 115169878 + 56757140 56763139 L1PA8 5853 + 1173 5853 11653 527 0 1 5 2 0 89 1 2 230 1 0 61 0 1 249 0 2 146 0 4 218 0 8 151 18 15 22 0 4 6 19 9 6 0 4 235 0 3 227 1 2 375 3 4 93 12 13 449 1 0 7 0 5 723 18 18 445 1343 32 46 2 0 60 40 18 52 2 1 21 1 0 35 1 0 56 chain 88599 chr13 115169878 + 56761480 56762823 LTR12D 1347 + 0 1347 40146 14 3 4 184 22 22 27 29 31 25 97 26 203 41 31 23 1 0 109 0 89 234 4 0 27 1 0 33 1 0 265 chain 76378 chr13 115169878 + 56795775 56796783 MER11A 1151 - 0 1137 45275 184 1 0 42 0 9 33 18 49 144 5 6 145 0 1 94 0 1 149 4 0 116 8 0 24 9 108 32 chain 3500 chr13 115169878 + 56810381 56810433 MLT1B 390 - 308 370 215357 15 1 11 36 chain 15535 chr13 115169878 + 56846749 56847080 LTR3B_ 500 + 158 457 139786 39 5 10 94 2 0 47 109 74 35 chain 3690 chr13 115169878 + 56893453 56893516 UCON1 95 - 25 84 212088 35 12 8 16 chain 22755 chr13 115169878 + 56935355 56935628 L1PA7 6471 - 1285 1558 115204 273 chain 96347 chr13 115169878 + 56935628 56936832 L1PA7 6471 + 5211 6442 37721 145 0 1 106 0 20 15 0 1 103 0 4 15 11 10 505 9 11 295 chain 26267 chr13 115169878 + 56956170 56956527 THE1B-int 1605 - 1244 1605 98949 33 0 1 237 7 11 35 1 0 7 4 7 5 3 0 25 chain 44902 chr13 115169878 + 56966651 56967162 MER9a2 513 - 0 513 63174 129 0 1 78 0 1 304 chain 5410 chr13 115169878 + 56968495 56968560 MER4A 717 + 653 717 190890 56 1 0 8 chain 21843 chr13 115169878 + 57046343 57046637 AluY 311 + 11 310 120840 25 17 28 59 1 0 3 3 0 176 2 0 8 chain 30068 chr13 115169878 + 57131425 57131923 MLT2A1 477 - 0 477 84609 9 0 4 29 84 53 8 0 2 114 0 7 61 1 0 21 4 1 132 0 1 35 chain 24363 chr13 115169878 + 57135967 57136253 AluY 311 + 0 307 108300 107 0 6 154 0 15 25 chain 241073 chr13 115169878 + 57149667 57152346 L1PA3long 6157 + 3464 6157 16716 482 0 1 360 1 0 4 0 1 565 0 1 161 0 1 265 1 2 95 1 11 744 chain 3249 chr13 115169878 + 57165252 57165393 MER21C 908 + 724 884 220033 24 88 108 5 1 0 23 chain 8177 chr13 115169878 + 57172510 57172642 L1PA8 5853 + 5724 5853 170086 16 2 1 14 8 7 40 1 0 51 chain 127692 chr13 115169878 + 57185337 57186723 L1PA2 6032 - 1 1387 28647 1386 chain 512589 chr13 115169878 + 57202839 57209050 L1PA6 6164 + 0 6152 5914 371 25 32 88 20 19 1822 1 2 180 98 26 649 0 1 213 0 1 48 0 1 182 1 0 333 2 1 44 0 3 21 22 20 72 0 2 201 0 1 29 0 4 277 2 0 471 1 0 1038 chain 143308 chr13 115169878 + 57211655 57213253 L1PA3long 6157 - 0 1594 25593 329 7 0 443 0 2 79 1 0 397 0 1 281 0 1 61 chain 48109 chr13 115169878 + 57213253 57213776 L1PA3long 6157 + 4018 4541 60316 523 chain 28880 chr13 115169878 + 57215200 57215816 L1MA1 4479 + 3586 4184 89538 73 19 4 52 8 7 15 13 11 7 1 0 71 1 0 27 1 0 6 1 0 60 60 70 53 0 1 4 8 12 20 1 0 4 0 1 20 7 5 33 1 0 5 13 0 8 12 17 12 chain 10488 chr13 115169878 + 57232632 57232851 LTR12C 1709 - 800 1059 158296 22 0 81 33 15 0 7 2 17 66 41 0 33 chain 5524 chr13 115169878 + 57232943 57233157 LTR12C 1709 - 506 618 189807 44 42 12 29 81 9 18 chain 49474 chr13 115169878 + 57235481 57236114 L1PA7 6471 - 1309 1971 59407 229 8 9 76 3 0 167 0 1 45 10 40 95 chain 102282 chr13 115169878 + 57236122 57237387 L1PA7 6471 + 5187 6461 36199 232 0 1 197 7 6 148 6 10 256 0 5 419 chain 29208 chr13 115169878 + 57247875 57248180 AluYa5 310 - 5 310 88013 305 chain 8098 chr13 115169878 + 57300344 57300478 MER44A 345 + 84 227 170500 33 1 3 57 9 16 34 chain 90091 chr13 115169878 + 57309560 57310780 LTR12C 1709 + 0 1709 39620 241 0 1 36 22 24 30 20 64 403 3 319 68 0 1 37 18 11 17 0 1 29 1 0 178 40 172 77 chain 49635 chr13 115169878 + 57317892 57318706 L1PB1 5432 - 12 798 59289 16 1 0 11 2 1 22 1 0 24 2 0 14 1 0 4 3 1 30 12 1 15 1 0 45 18 16 53 2 0 7 8 4 10 1 0 6 3 2 24 1 0 8 4 3 87 0 2 208 1 2 96 4 2 28 0 3 41 chain 474892 chr13 115169878 + 57336981 57343485 L1PA7 6471 + 0 6454 7884 285 16 17 106 3 5 603 8 13 193 0 3 123 5 6 99 0 2 685 1 0 15 9 14 47 7 8 390 0 1 26 16 4 441 0 3 239 0 2 198 12 10 74 1 0 593 0 1 109 0 4 174 539 472 144 0 2 510 1 0 79 0 2 252 15 15 344 0 1 6 7 6 84 1 0 44 chain 40095 chr13 115169878 + 57341459 57341998 L1PA7 6471 - 173 725 68952 252 22 24 67 0 6 8 6 11 184 chain 24852 chr13 115169878 + 57378610 57378897 AluY 311 + 8 295 105614 287 chain 18995 chr13 115169878 + 57392441 57392669 L1PA7 6471 + 6232 6460 130120 228 chain 12645 chr13 115169878 + 57393484 57393820 L1PB1 5432 - 9 315 149655 5 1 0 13 1 0 14 1 0 21 1 0 19 87 70 45 1 0 15 2 1 52 2 0 7 28 23 21 chain 171840 chr13 115169878 + 57398553 57400470 L1PA5 6144 + 4224 6143 21837 661 0 1 747 0 1 509 chain 21566 chr13 115169878 + 57416692 57416933 L1PA4 6152 - 9 249 121897 141 1 0 99 chain 84625 chr13 115169878 + 57430678 57431780 L1PA8 5853 + 4758 5853 41676 179 14 15 58 1 0 5 1 0 549 1 0 46 2 0 72 1 0 58 2 1 19 2 1 92 chain 5258 chr13 115169878 + 57455345 57455442 L1MC3 1789 + 203 298 192429 21 7 9 26 8 4 35 chain 18600 chr13 115169878 + 57459497 57459720 7SK 245 - 6 229 131225 223 chain 14715 chr13 115169878 + 57475339 57475564 LTR12C 1709 + 937 1131 142225 171 41 10 13 chain 7380 chr13 115169878 + 57496603 57496720 MLT1A 405 - 286 405 174898 37 4 5 49 3 4 24 chain 4425 chr13 115169878 + 57499246 57499427 MSTC 436 + 196 390 201648 31 59 72 8 0 1 11 41 40 31 chain 115617 chr13 115169878 + 57509237 57512207 L1PA5 6144 + 4763 6139 32583 66 0 9 531 0 4 570 1607 0 196 chain 2506 chr13 115169878 + 57510450 57510490 L1PA5 6144 + 5994 6029 233045 6 5 0 29 chain 21994 chr13 115169878 + 57531250 57531516 L1PA6 6164 - 3 269 120258 266 chain 12395 chr13 115169878 + 57532618 57532797 MER30 238 + 48 238 150655 63 4 0 7 2 20 56 3 0 44 chain 142916 chr13 115169878 + 57545308 57547370 MER61-int 3695 + 0 1995 25662 50 4 3 52 3 1 33 1 3 58 40 1 70 2 1 138 3 4 97 0 1 33 1 0 5 0 3 13 0 3 8 3 0 59 0 1 3 6 0 202 20 18 39 41 43 134 2 1 94 0 1 61 0 1 35 54 28 177 6 7 60 1 0 454 chain 144957 chr13 115169878 + 57555765 57557414 L1PA4 6152 - 9 1657 25332 104 0 1 34 0 1 354 1 2 121 1 0 52 1 0 181 0 1 784 3 0 13 chain 75212 chr13 115169878 + 57557414 57558262 L1PA4 6152 + 3635 4484 45776 405 0 1 443 chain 174133 chr13 115169878 + 57566792 57568758 L1PA4 6152 - 1 1972 21541 108 1 3 37 1 0 11 0 1 619 1 0 1024 0 4 164 chain 218004 chr13 115169878 + 57568758 57571193 L1PA4 6152 + 1749 4184 18004 2435 chain 5261 chr13 115169878 + 57585702 57585828 LTR40a 516 + 80 151 192402 62 55 0 9 chain 36704 chr13 115169878 + 57589388 57589851 L1PA8A 6298 - 9 476 73955 334 0 4 129 chain 55553 chr13 115169878 + 57589855 57590533 L1PA8A 6298 + 5118 5797 55385 156 0 2 206 2 1 314 chain 19992 chr13 115169878 + 57600485 57600820 L1PA10 4194 + 3820 4150 127166 81 42 43 138 1 0 13 26 21 34 chain 70922 chr13 115169878 + 57613911 57614678 L1PA2 6032 - 8 775 47951 767 chain 86628 chr13 115169878 + 57614750 57615686 L1PA2 6032 + 4235 5171 40913 936 chain 199409 chr13 115169878 + 57654487 57657013 L1PA7 6471 - 14 2545 19251 185 0 8 564 0 2 74 0 3 138 0 1 190 41 32 275 1 0 38 2 0 461 0 1 101 7 8 367 1 2 81 chain 38575 chr13 115169878 + 57657987 57658422 L1P1 4361 - 267 703 71329 16 0 1 419 chain 62931 chr13 115169878 + 57681814 57682720 L1PB2 3958 + 2956 3838 51475 351 2 0 52 1 4 8 13 0 42 0 7 19 2 0 11 9 1 18 0 4 117 8 0 27 1 0 60 7 6 68 2 0 24 1 0 63 chain 16858 chr13 115169878 + 57697161 57697374 L1PA6 6164 + 5908 6122 135947 99 0 2 27 1 0 86 chain 6091 chr13 115169878 + 57783462 57783530 L1PA8 5853 - 0 68 184486 68 chain 27123 chr13 115169878 + 57786330 57786623 L1P1 4361 - 1088 1381 95853 293 chain 60007 chr13 115169878 + 57793462 57794106 L1HS 6032 - 0 644 52817 644 chain 49499 chr13 115169878 + 57794112 57794646 L1HS 6032 + 4842 5376 59386 534 chain 512129 chr13 115169878 + 57803782 57810198 L1PA7 6471 + 0 6468 5962 153 0 1 257 0 1 23 6 7 422 1 0 147 8 32 10 2 3 20 11 10 690 0 1 870 0 1 854 1 0 92 0 8 4 0 1 402 2 0 82 4 5 87 0 2 326 0 5 215 22 28 12 10 12 202 8 7 436 1 0 49 0 2 122 12 14 582 6 7 160 1 0 104 chain 23647 chr13 115169878 + 57816158 57816521 THE1B 368 + 0 368 112323 101 6 2 66 1 0 23 43 53 123 chain 27358 chr13 115169878 + 57845849 57846153 L1PA3long 6157 + 5853 6157 95087 304 chain 22002 chr13 115169878 + 57859067 57859364 AluSp 311 - 16 311 120218 17 2 1 145 8 7 125 chain 4693 chr13 115169878 + 57860011 57860116 LTR12C 1709 - 991 1055 198603 39 41 0 25 chain 3572 chr13 115169878 + 57860155 57860289 LTR12C 1709 - 816 872 214109 34 80 2 20 chain 69734 chr13 115169878 + 57890548 57891668 L1PA11 4918 + 3551 4629 48503 109 4 0 202 5 7 293 9 7 4 0 1 95 0 4 52 3 0 4 2 0 59 23 18 68 2 0 13 2 1 11 55 42 13 1 0 13 2 0 11 47 33 18 chain 29792 chr13 115169878 + 57902684 57903002 AluYb8 318 - 0 318 85492 318 chain 93337 chr13 115169878 + 57903685 57904692 L1PA3long 6157 - 0 1007 38555 1007 chain 14263 chr13 115169878 + 57909523 57909715 L1MA1 4479 - 337 527 143670 30 8 7 27 1 0 126 chain 5571 chr13 115169878 + 57912555 57912698 MER21A 919 + 100 245 189366 25 10 22 11 1 0 19 12 0 19 23 26 23 chain 83533 chr13 115169878 + 57929796 57930716 L1PA3long 6157 - 5 924 42032 756 1 0 163 chain 235241 chr13 115169878 + 57930716 57933324 L1PA3long 6157 + 2600 5215 17014 614 0 1 166 0 1 606 9 12 796 0 2 417 chain 29663 chr13 115169878 + 57975538 57975848 AluYa5 310 - 0 310 86014 310 chain 35266 chr13 115169878 + 57979414 57979926 LTR7B 505 + 0 496 75836 93 0 31 64 71 0 39 4 25 10 0 3 231 chain 60253 chr13 115169878 + 57985170 57985830 L1PA3long 6157 + 5493 6153 52706 660 chain 242323 chr13 115169878 + 58008793 58012543 L1PBa1 4058 - 694 3973 16656 578 13 15 283 5 0 7 0 12 807 1 0 4 2 0 50 0 1 78 0 14 33 10 6 18 6 3 52 0 1 96 2 0 53 485 0 219 5 8 17 1 7 71 7 8 169 0 1 56 77 74 21 19 12 161 2 0 113 8 10 221 chain 36088 chr13 115169878 + 58010908 58011376 LTR15 485 - 7 485 74776 21 0 1 14 2 0 5 1 0 58 0 1 99 0 4 100 0 2 22 0 2 36 0 4 86 1 0 23 chain 4233 chr13 115169878 + 58023561 58023643 MADE1 96 + 0 96 204125 24 14 27 13 1 2 30 chain 4556 chr13 115169878 + 58033036 58033702 L1PA5 6144 - 0 664 22577 11 3 1 175 1 2 149 0 1 133 2 0 192 chain 69092 chr13 115169878 + 58033712 58034492 L1PA5 6144 - 675 1454 48766 726 1 0 53 chain 17861 chr13 115169878 + 58042374 58042681 THE1D 372 - 46 372 133212 81 1 7 29 46 48 22 7 8 49 0 10 72 chain 4357 chr13 115169878 + 58051571 58051617 L1PA7 6471 + 3963 4009 202473 46 chain 2501 chr13 115169878 + 58051618 58051649 L1PA7 6471 + 4009 4040 233125 31 chain 197929 chr13 115169878 + 58051661 58054048 L1PA7 6471 + 4052 6442 19362 698 0 1 4 1 0 306 6 7 263 4 2 281 0 3 820 0 1 4 chain 11608 chr13 115169878 + 58055545 58057242 L1PA5 6144 - 664 2326 22577 595 35 0 1067 chain 40287 chr13 115169878 + 58057242 58057734 L1PA5 6144 + 5642 6135 68544 339 17 18 136 chain 26734 chr13 115169878 + 58060033 58060317 L1HS 6032 + 5737 6021 97207 284 chain 14926 chr13 115169878 + 58066710 58066898 L1PA7 6471 + 6118 6306 141558 188 chain 135618 chr13 115169878 + 58066946 58068463 L1PA5 6144 + 4625 6144 26907 897 0 1 32 0 1 588 chain 22413 chr13 115169878 + 58068796 58069062 AluY 311 + 11 277 118418 121 0 1 44 1 0 100 chain 27214 chr13 115169878 + 58069398 58069738 L1PREC2 3366 - 993 1334 95549 281 0 1 59 chain 5948 chr13 115169878 + 58128641 58128767 L1MA4 2864 - 30 140 185694 17 20 12 39 3 1 27 6 0 14 chain 256381 chr13 115169878 + 58149545 58153650 L1PB2 3958 - 120 3871 15912 62 3 2 20 2 0 57 1 0 4 0 4 10 2 1 61 1 0 23 1 3 46 1 0 68 450 114 54 2 0 92 4 0 6 14 18 269 1 0 241 1 0 4 0 1 168 45 43 145 1 0 60 19 24 34 0 1 308 1 2 39 1 0 86 1 0 5 1 2 175 3 0 11 1 0 325 0 2 30 0 3 205 2 0 5 0 2 63 0 10 237 0 1 207 28 18 61 3 4 173 5 2 49 1 0 3 9 0 37 2 0 30 9 4 17 chain 53719 chr13 115169878 + 58160833 58161455 L1PA5 6144 + 5515 6138 56530 474 0 1 148 chain 13526 chr13 115169878 + 58194125 58194282 L1PA4 6152 + 5987 6144 146259 157 chain 71982 chr13 115169878 + 58196260 58197067 L1P1 4361 + 3441 4248 47481 807 chain 29261 chr13 115169878 + 58226130 58226439 AluYb8 318 + 0 309 87734 309 chain 27138 chr13 115169878 + 58242983 58243291 L1PA5 6144 - 6 315 95796 166 0 1 142 chain 51143 chr13 115169878 + 58246964 58247621 PABL_B 668 - 9 666 58222 308 2 1 61 1 0 8 1 0 124 7 9 113 0 1 32 chain 21400 chr13 115169878 + 58279878 58280131 AluSp 311 + 11 264 122510 253 chain 8850 chr13 115169878 + 58280597 58280707 MLT1C 463 - 0 110 166373 110 chain 84485 chr13 115169878 + 58356878 58358017 L1PA10 4194 - 83 1231 41722 29 1 0 19 14 23 518 30 0 8 0 22 82 7 9 277 3 0 39 1 0 5 0 11 106 chain 39219 chr13 115169878 + 58390121 58390560 L1PA5 6144 - 771 1221 70432 415 0 11 24 chain 66930 chr13 115169878 + 58390560 58391343 L1PA5 6144 + 5369 6144 49673 150 7 0 297 0 1 176 4 5 137 3 0 9 chain 117863 chr13 115169878 + 58419337 58420961 THE1A-int 1579 - 18 1579 31845 382 3 4 383 2 0 5 62 3 185 8 9 18 1 3 426 37 28 84 5 6 8 0 2 15 chain 11532 chr13 115169878 + 58440596 58440815 L1PA15-16 3068 + 301 516 154180 51 2 0 97 36 34 14 1 0 4 1 2 13 chain 35328 chr13 115169878 + 58445043 58445487 L1PA7 6471 + 6027 6469 75762 291 1 0 4 3 2 145 chain 101759 chr13 115169878 + 58458627 58459771 L1PA4 6152 + 5007 6151 36328 286 2 1 83 0 1 773 chain 10217 chr13 115169878 + 58470120 58470312 Tigger1 2417 + 2198 2387 159532 53 1 0 56 16 14 25 17 0 14 0 17 10 chain 86608 chr13 115169878 + 58476821 58477871 MER11C 1089 - 26 1089 40924 173 0 1 151 0 1 45 0 4 152 11 5 210 0 4 62 0 9 246 chain 21967 chr13 115169878 + 58524368 58524730 THE1B 368 - 0 368 120363 125 56 45 30 1 0 36 1 4 68 1 16 44 chain 16071 chr13 115169878 + 58526318 58526591 THE1B 368 - 0 282 138144 118 36 49 5 1 0 5 2 0 23 1 0 82 chain 4053 chr13 115169878 + 58526618 58526662 THE1B 368 - 324 368 206602 44 chain 53583 chr13 115169878 + 58528381 58528987 L1PA5 6144 - 1 607 56618 606 chain 5618 chr13 115169878 + 58535812 58535930 L1PA10 4194 - 35 139 188896 9 1 0 32 21 19 17 11 0 27 chain 33882 chr13 115169878 + 58536103 58536466 L1PA3long 6157 - 655 1018 77805 363 chain 53239 chr13 115169878 + 58536466 58537055 L1PA3long 6157 + 5567 6156 56866 589 chain 11741 chr13 115169878 + 58546217 58546378 THE1B-int 1605 - 6 162 153296 54 1 2 42 7 1 57 chain 7423 chr13 115169878 + 58565483 58565573 5S 121 + 0 90 174626 90 chain 224899 chr13 115169878 + 58572583 58575319 L1PA7 6471 - 12 2760 17602 108 29 31 575 1 0 110 0 1 6 3 6 627 7 9 9 2 0 25 2 0 369 5 6 6 1 0 76 0 4 425 0 5 350 chain 41182 chr13 115169878 + 58579964 58580425 L1PA3long 6157 - 0 461 67666 461 chain 33201 chr13 115169878 + 58580425 58580786 L1PA3long 6157 + 5364 5725 78883 361 chain 74136 chr13 115169878 + 58603251 58604078 L1PA3long 6157 - 0 839 46443 11 0 1 326 0 1 13 0 10 477 chain 27742 chr13 115169878 + 58604329 58604634 L1PA2 6032 - 458 763 93895 305 chain 39548 chr13 115169878 + 58604634 58605059 L1PA2 6032 + 5607 6032 69960 425 chain 23392 chr13 115169878 + 58646834 58647110 AluY 311 + 3 287 113688 89 0 9 25 1 0 161 chain 7986 chr13 115169878 + 58671024 58671116 L1PA5 6144 - 333 425 171136 92 chain 27682 chr13 115169878 + 58671118 58671435 L1PA5 6144 + 5815 6132 94107 317 chain 28369 chr13 115169878 + 58707448 58707801 THE1A 353 - 2 353 91702 149 1 0 92 1 0 110 chain 23381 chr13 115169878 + 58717900 58718244 THE1B 368 + 0 368 113754 33 7 22 117 1 0 26 35 45 125 chain 52305 chr13 115169878 + 58719393 58720095 THE1B-int 1605 + 899 1600 57427 22 5 6 27 7 9 213 1 0 42 8 4 56 0 1 321 chain 6232 chr13 115169878 + 58725452 58725523 L1PA5 6144 + 6073 6144 183301 71 chain 321158 chr13 115169878 + 58756279 58759880 L1PA4 6152 - 0 3609 12548 843 1 5 223 1 0 123 0 3 1672 0 2 738 chain 25714 chr13 115169878 + 58769839 58770199 THE1C 375 - 0 359 101238 24 2 1 22 1 2 131 16 15 164 chain 54010 chr13 115169878 + 58783169 58783907 MER4E 760 - 7 760 56357 71 0 13 148 1 0 34 0 4 38 1 0 200 0 1 49 17 2 13 0 9 5 2 1 9 0 10 122 4 0 24 chain 5695 chr13 115169878 + 58785475 58785727 MER67C 710 - 365 628 188159 22 66 67 42 88 98 34 chain 74538 chr13 115169878 + 58815241 58816107 MER11D 897 + 6 897 46242 4 0 1 485 0 1 94 3 26 280 chain 6160 chr13 115169878 + 58848061 58848137 MER45A 178 - 28 104 183902 76 chain 20964 chr13 115169878 + 58851294 58851639 THE1B 368 - 0 368 124055 101 1 0 6 53 63 26 1 0 108 5 20 44 chain 7372 chr13 115169878 + 58892444 58892580 LTR12C 1709 - 641 936 174967 38 34 193 64 chain 5017 chr13 115169878 + 58909050 58909107 MLT1A1 405 + 215 272 194962 57 chain 202263 chr13 115169878 + 58924533 58926832 L1P1 4361 - 2060 4360 19046 650 0 1 1649 chain 75438 chr13 115169878 + 58926832 58927668 L1PA4 6152 + 5315 6152 45702 693 0 1 143 chain 110478 chr13 115169878 + 58929756 58931111 L1PA7 6471 + 5119 6459 34081 230 0 1 18 0 2 17 1 0 20 29 0 213 0 11 457 0 1 54 0 1 80 8 7 228 chain 17401 chr13 115169878 + 58934131 58934423 L1PA15 4387 + 4033 4314 134509 7 0 1 4 1 0 59 1 0 26 1 0 54 2 1 21 4 0 11 1 0 39 19 16 42 chain 112947 chr13 115169878 + 59000721 59002087 L1PA7 6471 + 5083 6467 33388 112 0 4 108 0 5 131 0 1 143 11 15 12 0 3 65 0 1 115 0 1 509 0 6 7 5 0 138 2 0 8 chain 22417 chr13 115169878 + 59036401 59036672 AluSp 311 + 10 299 118393 219 0 18 52 chain 8834 chr13 115169878 + 59040296 59040423 MER85 139 - 0 137 166469 40 8 18 79 chain 4139 chr13 115169878 + 59067047 59067097 MLT1A 405 - 63 113 205376 50 chain 7607 chr13 115169878 + 59077451 59077536 LTR12E 1234 - 1 86 173501 85 chain 112745 chr13 115169878 + 59077543 59078925 LTR12C 1709 - 0 1709 33461 84 1 0 397 0 4 75 0 3 28 3 1 5 1 0 163 0 279 197 7 9 85 0 43 336 chain 297607 chr13 115169878 + 59084398 59090610 L1PB1 5432 + 1462 5420 13545 241 0 1 127 0 1 503 0 8 156 0 1 183 0 16 137 7 6 109 0 3 309 0 1 292 1927 0 170 6 7 398 0 1 86 316 0 253 4 0 158 0 1 174 13 11 279 17 11 9 1 0 24 1 0 8 1 0 7 2 1 4 2 0 11 3 1 50 2 1 14 9 8 36 2 1 16 28 15 16 3 1 4 1 0 14 2 0 20 6 5 20 1 0 13 1 0 16 chain 143274 chr13 115169878 + 59086466 59088003 L1HS 6032 - 386 1923 25601 1537 chain 36261 chr13 115169878 + 59088003 59088388 L1HS 6032 + 5647 6032 74548 385 chain 105673 chr13 115169878 + 59094790 59095948 L1PA3long 6157 - 0 1158 35335 1158 chain 93144 chr13 115169878 + 59098629 59099680 L1PA4 6152 + 5099 6141 38617 980 9 0 62 chain 5900 chr13 115169878 + 59101800 59101871 HY4 93 - 9 79 186184 44 1 0 26 chain 88172 chr13 115169878 + 59106549 59107518 L1PA3long 6157 - 0 968 40311 801 1 0 167 chain 17203 chr13 115169878 + 59107518 59107735 LTR12D 1347 - 67 484 135034 80 0 200 137 chain 5948 chr13 115169878 + 59107737 59107809 L1PA2 6032 + 5958 6030 185695 72 chain 28184 chr13 115169878 + 59175617 59175999 THE1C 375 - 0 375 92361 25 1 0 16 0 2 207 3 0 89 5 0 36 chain 11775 chr13 115169878 + 59184801 59184962 LTR1 825 + 19 192 153150 39 1 2 6 0 12 100 1 0 14 chain 19662 chr13 115169878 + 59184982 59185220 AluSc 308 + 20 274 128215 32 0 16 206 chain 26011 chr13 115169878 + 59198721 59198992 AluYa5 310 + 35 306 99975 271 chain 27172 chr13 115169878 + 59232532 59232888 THE1A 353 + 0 353 95686 88 2 1 17 5 4 92 1 0 151 chain 21352 chr13 115169878 + 59236505 59236793 AluSg7 307 + 11 294 122679 52 9 1 67 0 1 134 10 12 16 chain 560141 chr13 115169878 + 59246751 59252777 L1PA2 6032 - 0 6026 346 6026 chain 10183 chr13 115169878 + 59257907 59258035 LTR43 600 + 472 600 159703 128 chain 2856 chr13 115169878 + 59262008 59262038 LTR12F 595 + 145 175 227752 30 chain 26282 chr13 115169878 + 59270437 59270976 L1PA15 4387 + 3854 4366 98895 36 2 0 43 1 0 56 0 3 27 44 14 18 0 22 31 1 0 26 10 9 46 1 0 22 5 1 9 1 0 38 54 51 7 2 0 16 5 0 27 1 0 10 chain 41588 chr13 115169878 + 59281622 59282175 LTR12_ 688 - 28 688 67173 128 0 103 121 0 2 28 30 31 108 0 1 138 chain 26686 chr13 115169878 + 59283879 59284281 LOR1b 457 + 41 444 97358 85 3 4 18 11 10 134 12 19 107 6 0 26 chain 122045 chr13 115169878 + 59288034 59289474 LTR12C 1709 + 0 1709 30368 258 1 2 49 0 1 4 1 0 423 0 165 209 1 0 5 3 1 107 0 4 168 0 102 211 chain 35290 chr13 115169878 + 59300933 59301382 MER4A1 472 + 0 458 75806 159 4 13 286 chain 27394 chr13 115169878 + 59324690 59325045 THE1A 353 + 0 353 94991 109 12 11 82 1 0 151 chain 24443 chr13 115169878 + 59331724 59332015 AluSc 308 - 4 297 107839 25 1 3 265 chain 91506 chr13 115169878 + 59347354 59348561 LTR12C 1709 + 86 1709 39129 237 1 2 11 0 43 41 1 0 4 0 1 39 0 1 25 1 2 108 12 0 10 5 6 34 0 278 184 1 0 5 3 1 106 0 4 53 1 2 156 0 101 169 chain 321150 chr13 115169878 + 59359613 59364109 L1PA11 4918 - 340 4915 12550 11 2 0 13 1 0 11 49 36 19 1 0 14 2 0 108 0 4 24 0 5 8 16 12 20 0 1 304 0 1 292 1 2 33 1 0 132 3 9 92 1 0 74 4 5 55 0 3 49 8 12 130 7 6 43 25 40 722 7 11 72 3 5 386 1 2 76 0 43 204 0 2 11 0 2 53 0 1 362 1 0 366 0 3 42 5 6 96 1 0 70 0 1 113 2 5 121 10 22 21 34 0 10 0 33 20 2 0 11 5 4 27 18 15 30 3 1 38 chain 14929 chr13 115169878 + 59365536 59365830 MSTA 426 + 81 426 141543 20 19 55 47 42 38 55 9 29 41 1 0 60 chain 24713 chr13 115169878 + 59391584 59391885 AluYk4 311 + 11 305 106373 111 0 1 9 8 0 173 chain 7389 chr13 115169878 + 59397418 59397518 LTR12D 1347 - 572 730 174840 64 1 59 35 chain 28822 chr13 115169878 + 59404453 59404908 MLT2A1 477 - 0 477 89796 39 3 0 8 7 45 107 12 13 58 13 12 24 5 2 107 15 5 57 chain 143218 chr13 115169878 + 59419225 59421366 L1PB1 5432 + 3286 5415 25611 30 10 13 14 14 15 191 15 11 161 4 6 116 2 3 49 8 20 629 0 1 4 1 0 26 0 1 52 12 9 76 0 1 90 4 3 53 1 4 36 2 1 90 0 3 52 1 0 52 12 11 4 1 0 25 8 6 12 2 0 3 2 0 9 13 11 41 3 5 11 1 0 44 1 0 16 2 0 6 1 0 11 8 0 11 2 0 8 1 0 14 2 0 24 1 0 21 1 0 13 1 0 11 chain 71173 chr13 115169878 + 59431259 59432268 HUERS-P2-int 2744 - 3 1803 47858 25 3 1 12 2 0 5 2 0 9 1 0 34 3 0 39 2 1 14 1 0 3 1 0 7 1 0 9 2 1 35 5 0 18 0 799 244 4 9 171 0 9 174 0 1 145 3 0 35 chain 6760 chr13 115169878 + 59432816 59432901 LTR12C 1709 - 852 936 179249 20 1 0 64 chain 100583 chr13 115169878 + 59435666 59436784 L1PA4 6152 - 0 1121 36606 756 0 3 362 chain 6131 chr13 115169878 + 59445433 59445534 MLT2B2 565 + 0 108 184177 36 17 24 48 chain 41481 chr13 115169878 + 59452014 59452559 MER41A 554 - 0 552 67307 66 15 20 126 6 8 332 chain 42450 chr13 115169878 + 59476929 59477477 MLT2A2 560 + 0 560 66078 393 0 6 6 3 8 85 4 5 57 chain 4992 chr13 115169878 + 59497145 59497208 MER53 195 - 102 165 195223 63 chain 7658 chr13 115169878 + 59524491 59524623 MER11A 1151 + 1016 1151 173175 36 7 6 12 0 6 9 7 6 21 1 0 39 chain 121774 chr13 115169878 + 59531415 59532879 LTR12C 1709 - 0 1709 30456 479 2 6 103 7 5 4 1 0 42 0 243 166 1 0 145 0 3 5 3 0 494 1 3 11 chain 262133 chr13 115169878 + 59555989 59559193 L1PA7 6471 - 18 3239 15575 441 0 2 216 8 9 586 1 2 166 0 1 154 0 1 25 9 0 118 1 5 24 0 1 28 1 2 668 1 2 166 0 1 232 0 3 41 13 14 22 3 2 42 0 1 185 0 8 53 chain 16424 chr13 115169878 + 59571451 59571648 L1PA5 6144 - 107 304 137138 197 chain 128302 chr13 115169878 + 59575766 59577987 L1P2 5180 - 2548 4610 28495 258 1 2 41 20 4 64 323 225 253 21 0 4 12 0 130 1 0 272 17 18 35 15 9 268 1 0 4 11 9 5 0 3 132 0 1 4 1 0 87 0 1 5 11 42 16 22 1 46 33 15 108 chain 37707 chr13 115169878 + 59583293 59583784 LTR12_ 688 + 0 688 72545 80 1 67 33 1 25 147 0 103 155 0 4 74 chain 415783 chr13 115169878 + 59600706 59605306 L1PA2 6032 - 2 4548 9646 495 60 5 1474 0 1 2571 chain 42253 chr13 115169878 + 59610763 59611526 L1PB1 5432 + 4677 5392 66329 76 0 1 40 0 8 160 0 1 51 4 6 67 69 16 11 1 0 24 1 0 4 3 2 11 8 4 9 2 0 52 2 1 8 0 18 34 1 0 15 26 17 13 3 1 5 1 0 14 2 0 18 0 1 5 1 0 22 chain 23778 chr13 115169878 + 59621280 59621563 AluSp 311 + 9 292 111603 283 chain 7080 chr13 115169878 + 59628492 59628932 L1PREC2 3366 + 2888 3215 176888 16 25 18 22 44 27 35 6 4 41 3 1 7 1 0 4 1 0 12 134 66 14 56 41 19 chain 23685 chr13 115169878 + 59648850 59649182 THE1B 368 - 0 368 112124 43 0 25 106 0 2 20 6 5 84 9 4 20 0 15 44 chain 27700 chr13 115169878 + 59650736 59651088 THE1B 368 - 0 368 94041 174 0 2 23 1 0 110 0 15 44 chain 20328 chr13 115169878 + 59656082 59656341 AluSc8 310 + 0 259 126150 77 1 2 47 1 0 133 chain 28904 chr13 115169878 + 59657776 59658079 AluYa5 310 - 7 310 89440 303 chain 6161 chr13 115169878 + 59669488 59669566 MLT1C 463 + 47 124 183874 64 1 0 13 chain 31211 chr13 115169878 + 59671468 59671947 MLT2A2 560 + 0 504 82143 165 26 42 7 1 0 99 11 0 9 6 17 60 3 14 86 1 0 5 chain 9545 chr13 115169878 + 59688179 59688300 L1PA16 3655 + 3473 3591 162861 105 3 0 13 chain 15563 chr13 115169878 + 59710857 59711185 MSTA 426 - 56 426 139692 18 5 7 21 5 24 41 59 60 52 27 47 100 chain 3842 chr13 115169878 + 59732873 59732994 MER5C1 258 - 67 188 209763 36 1 0 5 57 58 22 chain 36411 chr13 115169878 + 59749742 59750323 MER4B 649 - 9 598 74353 7 1 0 4 0 4 20 1 4 88 0 1 40 18 25 24 3 0 31 1 0 101 1 0 29 9 7 49 29 27 32 0 1 88 0 2 5 chain 6164 chr13 115169878 + 59777756 59778174 MER34 540 - 16 491 183841 17 17 11 41 2 0 5 160 215 23 108 117 28 1 2 16 chain 4863 chr13 115169878 + 59778435 59778489 MER132 119 + 25 79 196653 54 chain 5188 chr13 115169878 + 59792511 59792602 L1PA16 3655 + 3519 3600 193166 58 3 0 15 7 0 8 chain 18915 chr13 115169878 + 59846890 59847125 L1P4 1494 - 1036 1271 130324 235 chain 28727 chr13 115169878 + 59863515 59863890 THE1C 375 + 0 375 90222 186 7 8 156 1 0 25 chain 524027 chr13 115169878 + 59865529 59871982 L1PA7 6471 + 0 6469 4765 412 6 2 983 0 3 15 1 4 334 1 0 331 4 8 74 0 5 518 7 6 388 2 1 28 1 8 364 4 2 35 0 1 7 2 1 472 0 2 91 5 27 135 0 1 894 7 4 213 0 1 254 9 5 9 0 2 5 1 0 4 5 6 55 1 0 293 26 11 147 0 1 297 3 0 10 chain 22018 chr13 115169878 + 59888318 59888629 AluY 311 + 12 299 120145 121 18 14 46 9 0 96 11 0 10 chain 2844 chr13 115169878 + 59907032 59907064 Tigger8 508 - 334 366 227958 32 chain 18015 chr13 115169878 + 59929152 59929487 THE1D 372 + 32 372 132814 21 17 5 95 67 85 102 1 0 32 chain 4797 chr13 115169878 + 59939611 59939671 L1MA5A 2387 - 94 157 197393 22 0 3 38 chain 9413 chr13 115169878 + 59946467 59946581 THE1D 372 + 247 360 163492 93 1 0 20 chain 406771 chr13 115169878 + 59950978 59956304 L1PA7 6471 + 3 6470 9884 59 0 17 330 3 0 555 1 4 537 12 13 353 10 22 739 0 2 68 0 10 629 0 1406 82 0 1 794 8 7 45 310 0 333 1 2 157 0 1 145 7 6 136 0 2 12 chain 14524 chr13 115169878 + 59956325 59956550 MER87 546 - 276 546 142811 41 0 2 32 6 7 4 1 0 42 0 44 37 7 6 55 chain 107220 chr13 115169878 + 59961142 59962632 L1PB1 5432 - 334 1829 34909 78 13 15 170 39 39 129 7 8 31 3 0 135 1 0 4 0 1 182 0 1 95 4 5 91 0 1 369 8 10 131 chain 22958 chr13 115169878 + 59977294 59977602 L1MA2 4263 + 3806 4105 115814 143 18 16 93 7 0 47 chain 11983 chr13 115169878 + 59991360 59991528 L1PA8 5853 + 5688 5853 152281 6 1 0 49 3 2 15 2 1 92 chain 3473 chr13 115169878 + 59998389 59998439 MER96B 391 + 268 317 215780 18 1 0 31 chain 10485 chr13 115169878 + 60001132 60001403 L1PB1 5432 - 10 262 158310 4 1 0 14 8 7 6 1 0 21 1 0 24 25 20 7 1 0 11 23 12 17 1 0 43 20 23 43 chain 107945 chr13 115169878 + 60001403 60002960 L1PB1 5432 + 3881 5399 34736 99 6 7 338 4 5 50 0 1 115 1 2 128 8 0 178 1 0 150 0 3 146 17 11 24 1 0 9 27 20 38 35 32 43 1 0 16 3 0 15 9 0 16 3 1 4 1 0 14 2 0 24 1 0 22 1 0 7 chain 3534 chr13 115169878 + 60006377 60006417 L1PB1 5432 - 4668 4708 214805 40 chain 31848 chr13 115169878 + 60014625 60015094 LTR12C 1709 + 645 1196 81095 4 0 1 43 41 0 50 2 0 93 2 1 192 1 89 8 0 37 33 chain 4003 chr13 115169878 + 60054203 60054249 U7 62 + 0 46 207341 46 chain 3767 chr13 115169878 + 60075278 60075357 MADE1 96 - 0 96 210856 22 20 37 37 chain 23492 chr13 115169878 + 60075748 60076015 AluSc5 308 + 11 278 113166 267 chain 19682 chr13 115169878 + 60087583 60087818 LTR17 781 + 89 325 128155 191 0 1 44 chain 81286 chr13 115169878 + 60090390 60091346 L1PA6 6164 - 2 951 43048 144 11 4 352 0 1 346 1 0 102 chain 23525 chr13 115169878 + 60099784 60100066 AluSc 308 - 12 295 112987 83 0 1 199 chain 3967 chr13 115169878 + 60120396 60120520 MER58A 224 - 42 167 207888 13 0 1 4 1 0 5 58 59 43 chain 9144 chr13 115169878 + 60130881 60131045 L1PA17 2846 + 2536 2697 164839 5 0 1 50 2 0 6 2 1 12 9 8 5 0 2 6 1 0 17 1 0 48 chain 374420 chr13 115169878 + 60131722 60136897 L1PB1 5432 - 28 5356 10943 13 1 0 21 1 0 17 0 1 6 2 0 14 8 5 19 14 5 7 3 0 16 1 0 41 32 19 53 2 0 9 16 11 9 1 0 24 3 0 8 7 3 51 1 0 5 0 1 193 14 14 84 6 0 132 0 2 44 0 7 224 18 8 127 1 0 102 0 1 44 1 0 326 41 14 458 4 5 128 1 214 157 1 0 169 0 2 4 0 1 41 0 4 43 0 1 34 13 12 67 5 7 248 0 2 74 15 16 421 10 15 195 12 0 11 1 0 40 1 0 446 7 8 87 6 8 50 3 9 117 29 38 47 2 0 98 0 3 40 1 0 282 0 1 45 chain 6915 chr13 115169878 + 60142201 60142308 LTR9B 643 + 454 559 178074 21 0 1 36 0 7 6 11 1 33 chain 502737 chr13 115169878 + 60164816 60170895 L1PA6 6164 + 0 6154 6684 13 0 1 125 12 12 85 0 2 47 0 22 210 0 2 48 1 0 395 10 11 50 2 1 212 0 16 295 0 1 128 1 2 465 0 3 148 0 7 31 2 3 204 1 4 167 4 7 210 1 2 255 0 1 12 6 2 29 25 11 25 0 3 33 1 0 223 1 0 117 1 5 44 0 1 200 2 3 383 0 3 89 0 2 132 0 2 252 0 3 293 0 1 367 0 3 660 0 9 62 chain 12188 chr13 115169878 + 60170921 60171093 THE1C 375 - 207 375 151462 4 1 0 31 11 8 125 chain 29572 chr13 115169878 + 60172499 60172816 AluYb8 318 + 0 317 86322 317 chain 20270 chr13 115169878 + 60190000 60190362 MSTB 430 - 0 338 126311 46 11 0 150 30 43 5 1 0 33 3 4 49 26 0 8 chain 28204 chr13 115169878 + 60219870 60220224 THE1A 353 + 0 353 92292 119 2 1 233 chain 122062 chr13 115169878 + 60220224 60221775 THE1A-int 1579 + 0 1574 30364 161 0 6 107 1 0 4 0 1 21 2 3 488 0 1 87 4 7 333 0 1 292 0 11 51 chain 24179 chr13 115169878 + 60221780 60222123 THE1A 353 + 0 353 109325 110 1 0 90 31 41 98 3 4 10 chain 5097 chr13 115169878 + 60230434 60230498 Tigger2a 444 + 330 394 194119 64 chain 4439 chr13 115169878 + 60264698 60264766 Tigger16a 304 + 174 240 201470 22 9 7 37 chain 89087 chr13 115169878 + 60283408 60284388 L1PA3long 6157 + 5176 6156 39972 980 chain 14001 chr13 115169878 + 60318562 60318761 MER30 238 + 0 230 144575 14 4 22 68 8 24 71 3 0 31 chain 28984 chr13 115169878 + 60376803 60377117 AluYb8 318 - 7 318 89074 185 3 0 126 chain 73474 chr13 115169878 + 60399174 60399995 L1PA3long 6157 - 1 824 46754 283 0 1 160 2 3 376 chain 138756 chr13 115169878 + 60399995 60401508 L1PA3long 6157 + 3824 5338 26358 122 0 1 1391 chain 218929 chr13 115169878 + 60422447 60424818 L1PA2 6032 - 0 2368 17951 11 2 0 1820 2 1 536 chain 46343 chr13 115169878 + 60424818 60425321 L1PA2 6032 + 3174 3677 61367 503 chain 38080 chr13 115169878 + 60472911 60473462 MLT2A2 560 + 0 560 72013 70 0 1 21 3 0 88 1 0 26 21 20 83 1 2 25 10 11 53 0 11 149 chain 4153 chr13 115169878 + 60491414 60491466 MER2 342 + 267 319 205199 52 chain 117222 chr13 115169878 + 60529710 60531346 THE1B-int 1605 + 26 1605 32048 86 54 0 318 37 21 67 0 1 143 64 66 27 5 15 835 chain 11700 chr13 115169878 + 60543521 60543658 L1PA7 6471 - 4 139 153469 8 2 0 127 chain 272412 chr13 115169878 + 60558673 60561622 L1PA2 6032 + 3083 6032 15053 2949 chain 67016 chr13 115169878 + 60620443 60621271 L1PA7 6471 + 5646 6469 49651 225 0 1 267 1 0 65 1 0 117 7 6 131 3 0 11 chain 24687 chr13 115169878 + 60678943 60679259 AluY 311 + 0 308 106512 59 5 1 185 8 4 59 chain 23100 chr13 115169878 + 60719505 60719793 AluY 311 + 2 293 115141 34 0 4 83 3 0 9 0 1 72 3 4 84 chain 23494 chr13 115169878 + 60742151 60742450 AluSc 308 - 9 307 113150 20 5 0 5 0 2 146 1 0 17 0 1 100 0 2 5 chain 29958 chr13 115169878 + 60764412 60764730 AluYb8 318 - 0 318 84948 318 chain 3890 chr13 115169878 + 60779792 60779895 SVA_F 1814 + 405 660 209029 25 47 199 31 chain 20095 chr13 115169878 + 60793274 60793538 AluSp 311 - 26 291 126845 227 10 11 27 chain 20036 chr13 115169878 + 60805871 60806100 L1PA5 6144 + 5900 6130 127020 87 0 1 142 chain 19966 chr13 115169878 + 60808028 60808552 MER44B 551 - 22 550 127252 37 17 18 15 1 0 36 3 1 33 1 0 5 0 7 6 163 161 27 32 33 36 0 1 112 chain 557225 chr13 115169878 + 60820036 60826183 L1PA3long 6157 - 5 6157 589 139 1 0 970 0 1 1779 0 2 52 1 0 2017 0 3 752 0 1 436 chain 101636 chr13 115169878 + 60827905 60829110 L1PA6 6164 + 4945 6162 36359 369 0 8 211 0 3 79 1 2 545 chain 6987 chr13 115169878 + 60840320 60840399 LTR30 714 - 0 79 177560 79 chain 36786 chr13 115169878 + 60840570 60841500 HERV30-int 1034 - 275 897 73818 24 39 0 49 14 0 17 89 22 14 60 8 33 2 0 6 9 6 18 34 0 35 21 6 89 1 0 78 13 1 36 4 0 5 1 0 51 33 0 61 7 6 33 7 1 13 24 0 10 chain 57737 chr13 115169878 + 60842140 60842854 LTR30 714 - 0 714 54113 154 4 0 99 7 12 221 1 0 228 chain 10555 chr13 115169878 + 60850284 60850401 L1PA5 6144 + 6014 6131 158024 117 chain 24289 chr13 115169878 + 60850453 60850744 AluSg4 309 + 5 296 108711 291 chain 14397 chr13 115169878 + 60867746 60867987 MER47A 366 + 78 363 143218 52 0 5 86 6 10 22 2 53 12 18 2 43 chain 187657 chr13 115169878 + 60868175 60870232 L1PA3long 6157 + 4098 6157 20274 1720 0 1 138 0 1 199 chain 12466 chr13 115169878 + 60879428 60879607 Tigger2a 444 - 66 255 150394 21 1 0 43 7 13 71 0 5 36 chain 28821 chr13 115169878 + 60895794 60896097 AluYa5 310 - 7 310 89798 303 chain 29768 chr13 115169878 + 60914919 60915272 L1PA6 6164 - 4 357 85579 353 chain 17446 chr13 115169878 + 60931648 60931917 L1PA8 5853 - 0 267 134388 93 1 0 19 2 1 7 0 4 32 22 20 69 2 0 22 chain 129408 chr13 115169878 + 60949160 60950746 L1PA7 6471 + 4922 6468 28223 63 1 0 319 39 1 200 2 1 108 0 3 21 0 1 822 4 0 7 chain 25433 chr13 115169878 + 60953441 60953837 MSTA 426 - 0 426 102528 109 3 6 10 0 5 31 0 2 22 10 8 26 1 2 53 31 52 100 chain 45978 chr13 115169878 + 60966042 60966643 LTR71B 605 - 21 605 62061 230 15 0 55 0 1 145 14 0 10 1 12 131 chain 28571 chr13 115169878 + 60978445 60978743 AluYa5 310 - 12 310 90866 298 chain 28080 chr13 115169878 + 60981946 60982447 THE1A 353 + 0 353 92710 108 1 0 115 147 0 130 chain 130445 chr13 115169878 + 60982447 60984019 THE1A-int 1579 + 0 1579 27978 252 0 7 327 2 0 253 0 1 637 0 1 101 chain 27176 chr13 115169878 + 60984019 60984362 THE1A 353 + 0 341 95677 110 1 0 88 1 0 143 chain 30874 chr13 115169878 + 60993539 60993932 L1PA8 5853 + 5469 5853 82725 93 1 0 34 1 0 17 2 0 67 1 0 7 3 1 52 2 1 19 1 0 93 chain 68975 chr13 115169878 + 61009780 61010840 L1PB2 3958 - 120 1163 48822 64 2 0 37 0 1 57 1 0 59 1 0 28 0 15 6 0 1 23 9 2 92 4 0 15 4 0 57 10 4 14 1 0 39 1 6 11 2 0 71 0 1 10 12 15 64 1 2 10 0 1 8 0 6 8 32 6 181 0 3 126 chain 50092 chr13 115169878 + 61036949 61037975 L1MA4 2864 + 1399 2201 58949 241 0 5 19 6 11 24 279 26 269 1 6 16 9 1 14 5 6 80 0 21 24 16 17 11 1 0 11 chain 6287 chr13 115169878 + 61047146 61047417 MSTD 398 - 8 287 182905 65 1 2 10 136 163 16 22 2 21 chain 6223 chr13 115169878 + 61069479 61069570 LTR8 732 - 47 138 183380 56 7 6 19 0 1 9 chain 319294 chr13 115169878 + 61070515 61075273 HERVL-int 5654 + 0 4365 12625 101 1 2 6 1 0 314 747 0 224 3 2 40 0 260 136 3 0 39 5 4 249 1 0 143 38 37 193 0 7 68 0 8 127 0 2 461 0 12 301 0 1 195 0 10 239 0 4 284 0 2 130 0 1 98 0 1 368 13 13 124 6 59 100 chain 51927 chr13 115169878 + 61070973 61071685 LTR17 781 - 75 781 57665 12 31 9 61 0 4 86 4 5 101 1 0 4 0 1 96 1 0 157 0 6 69 0 7 29 1 0 59 chain 137793 chr13 115169878 + 61075987 61078176 HUERS-P3b-int 2065 - 7 2057 26518 4 1 0 15 35 8 85 6 5 57 5 1 61 10 7 14 2 4 68 3 1 91 1 0 14 9 6 16 2 0 28 0 3 16 2 0 37 25 2 44 1 0 226 22 25 264 1 4 64 0 1 58 2 1 54 1 0 13 1 2 138 0 3 51 1 3 19 2 0 208 118 38 176 3 4 26 4 0 85 chain 211788 chr13 115169878 + 61079720 61082846 L1P2 5180 + 1196 5089 18373 70 9 0 4 0 9 542 0 2 30 12 15 12 13 0 174 315 1 272 1 0 65 0 4 29 1 4 89 1 0 53 8 12 120 12 16 54 0 1 4 9 12 128 5 1 6 0 4 77 0 1067 339 0 5 672 chain 34434 chr13 115169878 + 61088036 61088462 THE1B-int 1605 + 0 432 77013 40 1 0 222 1 8 162 chain 3719 chr13 115169878 + 61107068 61107112 Tigger5 388 - 36 80 211657 44 chain 25702 chr13 115169878 + 61115851 61116152 AluSp 311 - 0 303 101277 61 0 2 240 chain 5975 chr13 115169878 + 61137656 61137734 MER20 218 - 37 116 185469 20 1 2 57 chain 14390 chr13 115169878 + 61138306 61138496 MER4E 760 - 28 221 143232 77 2 1 96 1 5 14 chain 3621 chr13 115169878 + 61142165 61142204 MER33 330 + 251 290 213325 39 chain 70097 chr13 115169878 + 61169302 61170220 L1PA8 5853 - 0 914 48352 53 0 1 39 1 0 19 2 1 52 1 0 9 1 0 13 0 1 52 2 0 49 1 0 29 6 10 183 1 2 252 0 1 80 3 0 5 9 7 56 chain 25601 chr13 115169878 + 61172649 61173568 L1PREC2 3366 + 2464 3249 101725 20 18 22 242 16 14 44 2 1 10 71 71 17 24 17 29 354 245 19 20 11 15 10 0 8 chain 29200 chr13 115169878 + 61227818 61228166 L1PA6 6164 + 5806 6158 88047 303 0 4 45 chain 252310 chr13 115169878 + 61231703 61235355 L1PA10 4194 - 339 4019 16114 4 0 1 53 0 3 56 0 1 28 4 5 16 6 5 111 0 28 358 13 14 36 2 0 12 4 1 160 5 0 15 4 8 192 1 2 48 0 1 19 14 15 20 0 5 7 2 1 5 0 2 384 9 13 453 8 6 107 1 2 159 0 1 169 4 28 36 1 0 238 8 11 93 15 16 177 0 3 204 0 3 21 26 24 49 1 0 5 3 7 11 2 1 6 0 1 15 1 0 10 1 0 14 1 0 21 2 0 22 1 0 7 37 12 7 1 0 15 2 0 20 64 53 12 2 0 12 chain 9167 chr13 115169878 + 61261254 61261388 THE1B 368 - 0 135 164723 47 13 14 74 chain 18109 chr13 115169878 + 61262981 61263233 L1MA5A 2387 - 903 1153 132570 165 19 17 68 chain 539078 chr13 115169878 + 61283886 61289915 L1PA3long 6157 + 1 6157 2974 5 3 0 146 14 15 501 0 2 44 0 1 27 1 0 25 9 137 146 0 1 115 1 4 2363 3 0 900 1 0 208 1 0 1516 chain 29562 chr13 115169878 + 61309730 61310040 AluYg6 310 + 0 310 86375 310 chain 87749 chr13 115169878 + 61314899 61315876 L1PA3long 6157 - 0 978 40465 453 1 2 523 chain 218836 chr13 115169878 + 61315885 61318267 L1PA2 6032 - 4 2382 17955 7 4 0 2371 chain 42214 chr13 115169878 + 61318524 61319045 THE1B-int 1605 + 1081 1600 66383 144 6 4 371 chain 40762 chr13 115169878 + 61343791 61344267 L1PA7 6471 - 2 478 68223 476 chain 374980 chr13 115169878 + 61374010 61380127 L1PA3long 6157 - 0 6138 10921 656 10 6 304 1847 0 7 0 1848 30 0 1 515 0 4 123 0 1 1168 0 1 1273 0 18 47 1 0 136 chain 41982 chr13 115169878 + 61386670 61387139 L1PA4 6152 - 20 489 66645 469 chain 5784 chr13 115169878 + 61390834 61390903 HY4 93 - 4 73 187329 69 chain 543266 chr13 115169878 + 61401347 61407480 L1PA4 6152 - 12 6152 2302 75 0 3 23 0 1 2089 3 2 662 1 0 849 0 4 1731 0 1 700 chain 19150 chr13 115169878 + 61427858 61428214 THE1B 368 - 0 367 129681 56 7 6 63 7 15 14 34 37 37 40 41 98 chain 221458 chr13 115169878 + 61439591 61442944 L1PA13 3608 - 123 3490 17784 17 1 0 20 8 4 48 2 0 105 5 6 12 2 0 13 9 5 96 1 0 31 1 0 117 0 4 48 1 0 193 0 1 63 0 4 202 0 1 4 5 4 41 0 5 39 5 6 100 5 8 43 0 1 125 0 1 46 0 3 35 6 19 68 1 0 24 33 35 120 5 6 35 0 3 210 0 3 29 18 19 56 19 5 144 1 0 39 0 4 52 0 3 113 13 10 18 8 7 35 0 27 319 2 0 97 1 0 14 6 4 13 7 5 17 1 0 18 6 2 16 2 0 17 1 0 15 1 0 122 13 11 62 50 41 14 9 8 12 2 1 6 2 0 18 chain 506794 chr13 115169878 + 61474174 61481184 L1PA7 6471 + 3 6470 6414 309 0 2 88 3 1 946 24 25 8 0 1 100 0 9 542 0 1 603 0 3 65 2 6 177 0 4 591 1 2 11 1 0 73 0 4 49 0 1 10 617 4 832 0 4 201 8 12 262 2 0 38 2 4 204 5 9 103 0 5 228 1 3 65 0 1 8 1 4 17 7 8 20 13 17 453 2 3 65 0 2 66 0 11 168 0 1 14 1 0 4 chain 3220 chr13 115169878 + 61502978 61503012 MLT2B1 522 + 484 518 220585 34 chain 182511 chr13 115169878 + 61508343 61510394 L1PA4 6152 - 9 3683 20740 28 6 0 1293 0 1629 724 chain 16353 chr13 115169878 + 61515037 61515368 MER21B 843 - 18 344 137331 16 3 0 39 14 11 17 4 0 23 16 19 108 7 5 13 32 33 5 0 3 34 chain 25469 chr13 115169878 + 61534598 61534970 THE1C 375 + 0 375 102358 130 9 13 35 28 28 144 1 0 25 chain 29220 chr13 115169878 + 61561047 61561362 AluYb8 318 - 5 318 87954 187 2 0 126 chain 21329 chr13 115169878 + 61568862 61569142 MLT2A1 477 - 193 477 122763 79 0 3 31 7 4 148 0 4 15 chain 26778 chr13 115169878 + 61599924 61600227 AluYk4 311 + 0 304 97058 39 0 1 264 chain 36113 chr13 115169878 + 61610450 61610916 LTR10F 562 + 0 562 74750 39 1 0 108 1 29 14 1 60 31 0 10 271 chain 30079 chr13 115169878 + 61662591 61662999 LTR7 482 + 0 482 84565 69 8 46 109 8 40 25 0 1 15 0 1 80 0 2 94 chain 291588 chr13 115169878 + 61663001 61666910 HERVH-int 3825 + 0 3825 13925 376 0 2 83 1 119 24 43 14 13 21 18 7 1 0 46 12 11 66 0 1 58 2 5 90 0 8 221 0 1 63 15 0 128 0 5 72 9 0 27 0 2 10 1 0 110 8 5 5 0 3 346 12 1 29 2 0 242 10 19 11 5 6 502 73 77 25 1 0 5 1 2 115 165 0 43 1 0 809 chain 31110 chr13 115169878 + 61668163 61668573 LTR7 482 + 0 482 82324 69 8 46 109 10 42 23 0 1 17 0 1 174 chain 11034 chr13 115169878 + 61675353 61675560 MER39 703 + 461 648 156076 5 0 1 55 53 32 94 chain 3340 chr13 115169878 + 61683005 61683043 MLT2B3 573 + 535 573 218229 38 chain 36288 chr13 115169878 + 61693767 61694246 L1PA7 6471 - 12 469 74518 24 25 0 357 1 3 51 0 1 21 chain 14132 chr13 115169878 + 61697123 61697277 L1HS 6032 - 2 156 144098 154 chain 27538 chr13 115169878 + 61698952 61699306 THE1A 353 - 0 353 94544 118 2 1 4 0 1 119 1 0 110 chain 124200 chr13 115169878 + 61699318 61700875 THE1A-int 1579 - 13 1579 29627 87 0 2 201 0 1 23 0 3 229 13 2 17 0 18 564 7 4 370 5 4 41 chain 22864 chr13 115169878 + 61755653 61755936 AluY 311 + 20 308 116261 112 0 1 124 8 12 39 chain 249587 chr13 115169878 + 61780219 61783179 HERVH-int 3825 + 0 3825 16277 333 1 0 33 0 868 191 0 1 513 12 1 29 2 0 280 0 1 841 1 4 258 6 0 5 3 9 41 24 25 294 6 11 87 chain 27193 chr13 115169878 + 61785010 61785413 LTR7 482 + 0 482 95614 69 8 46 109 8 40 21 2 0 31 1 11 35 4 5 115 chain 5552 chr13 115169878 + 61831735 61831898 L1MC1 2226 - 98 242 189546 5 1 0 19 8 6 15 44 36 30 0 1 22 9 0 10 chain 495609 chr13 115169878 + 61840803 61846707 L1PA6 6164 + 0 6159 7094 448 1 0 69 0 2 48 1 0 150 1 243 280 1 0 447 0 2 508 0 1 127 0 1 61 1 3 309 0 1 485 3 1 450 1 0 313 1 0 285 0 1 233 0 3 580 0 3 261 1 5 839 chain 6259 chr13 115169878 + 61895711 61895797 L1PA16 3655 + 3504 3587 183099 73 3 0 10 chain 515037 chr13 115169878 + 61897714 61903868 L1PA5 6144 + 10 6144 5668 54 13 4 67 10 24 690 4 5 100 25 0 211 13 4 86 0 1 217 0 1 197 0 4 632 7 0 192 0 2 573 0 1 407 0 4 291 7 8 513 1 0 973 0 4 12 1 0 7 1 0 850 chain 5321 chr13 115169878 + 61913925 61913989 LTR12E 1234 + 645 709 191818 64 chain 4410 chr13 115169878 + 61926907 61927113 LTR40b 463 - 47 229 201807 43 139 115 24 chain 155925 chr13 115169878 + 61928989 61931087 L1PA4 6152 - 0 1781 23865 6 0 5 756 0 1 139 1 0 266 5 6 262 322 0 82 1 0 258 chain 336733 chr13 115169878 + 61939428 61943569 L1PA7 6471 + 2306 6466 11975 290 0 4 32 7 0 89 0 2 28 7 11 593 0 1 194 3 0 266 6 10 576 4 9 245 5 4 8 0 4 16 5 6 262 0 5 25 0 2 634 3 0 645 0 2 80 1 0 117 chain 68269 chr13 115169878 + 61972218 61973178 L1PA8 5853 - 0 950 49135 30 16 17 46 1 0 19 6 5 42 13 10 5 1 0 71 2 0 46 1 0 552 2 0 107 chain 162432 chr13 115169878 + 62013606 62015630 L1PA8A 6298 + 4059 6164 23010 542 0 1 176 5 6 256 0 67 191 1 2 183 2 1 287 0 12 263 1 0 4 0 1 113 chain 29458 chr13 115169878 + 62035488 62035798 AluYa5 310 - 0 310 86809 310 chain 20658 chr13 115169878 + 62038565 62038816 AluSc 308 - 23 272 125115 7 2 0 242 chain 18835 chr13 115169878 + 62078845 62079047 L1PA2 6032 - 3 205 130559 202 chain 73482 chr13 115169878 + 62093066 62094154 MER11B 1079 - 0 1079 46797 29 6 5 105 0 3 57 0 1 53 8 9 21 0 2 7 57 49 20 2 6 117 0 1 70 0 1 15 24 12 22 18 17 457 chain 2967 chr13 115169878 + 62102039 62102073 MLT1I 406 - 8 42 225726 34 chain 58192 chr13 115169878 + 62132939 62133695 MER4E 760 - 0 760 53871 115 1 4 5 3 0 102 1 6 47 0 1 46 1 0 71 0 2 88 2 1 10 0 1 22 4 0 219 1 2 18 chain 85855 chr13 115169878 + 62142116 62143078 L1PA5 6144 - 0 961 41213 906 1 0 55 chain 19302 chr13 115169878 + 62143080 62143315 L1P1 4361 + 4109 4341 129233 41 1 0 155 1 0 23 2 1 12 chain 2971 chr13 115169878 + 62148274 62148307 L1MB7 1623 + 1393 1426 225646 33 chain 34428 chr13 115169878 + 62181148 62181619 LTR19A 502 + 0 460 77020 191 2 0 5 7 8 33 13 0 74 1 2 47 2 4 96 chain 509232 chr13 115169878 + 62197058 62203573 L1PA6 6164 - 4 6151 6226 6 3 0 121 32 30 604 0 1 587 14 0 8 44 0 292 0 4 88 0 1 478 5 4 232 0 2 428 0 3 14 0 1 78 19 14 69 261 0 25 0 1 326 0 1 173 1 2 4 1 0 19 9 0 170 0 1 39 26 0 1362 0 1 152 17 0 252 1 0 74 1 0 480 chain 15633 chr13 115169878 + 62200254 62200441 L1PA4 6152 - 0 193 139484 10 0 6 177 chain 17311 chr13 115169878 + 62231938 62232147 L1PA7 6471 - 1 210 134756 209 chain 5059 chr13 115169878 + 62232147 62232210 U3 216 - 146 216 194538 48 0 7 15 chain 257324 chr13 115169878 + 62241246 62244633 MER61-int 3695 - 348 3693 15860 166 4 7 8 3 0 140 0 1 125 1 0 50 1 0 81 2 1 154 5 0 39 32 4 381 0 5 237 1 3 334 1 5 60 1 4 217 0 1 72 1 2 20 0 3 115 0 4 457 15 13 87 15 17 122 1 2 74 0 1 63 2 1 77 30 8 7 8 0 133 3 2 42 chain 51130 chr13 115169878 + 62245832 62246485 PABL_A 660 + 0 660 58232 183 1 4 152 0 1 78 4 7 235 chain 101047 chr13 115169878 + 62251843 62253039 L1PA7 6471 - 4 1213 36501 313 0 1 57 0 1 308 0 1 157 0 7 129 4 1 11 0 6 217 chain 158297 chr13 115169878 + 62318089 62320037 L1PA6 6164 + 4225 6161 23555 134 1 5 41 1 2 236 2 0 139 1 7 6 6 0 249 19 5 266 1 0 104 0 1 197 1 0 544 chain 29972 chr13 115169878 + 62335386 62335699 AluYb8 318 + 0 313 84902 313 chain 17250 chr13 115169878 + 62363286 62363511 AluY 311 + 49 275 134925 82 8 9 135 chain 166660 chr13 115169878 + 62379811 62381665 L1PA3long 6157 + 4300 6155 22440 1763 0 1 91 chain 117069 chr13 115169878 + 62381744 62383202 L1PA7 6471 + 4992 6469 32105 204 1 0 276 0 1 141 0 2 77 0 1 16 6 4 255 1 0 38 0 18 367 0 1 76 chain 39610 chr13 115169878 + 62401854 62402298 L1PA4 6152 - 8 453 69877 149 0 1 295 chain 8324 chr13 115169878 + 62407866 62407957 L1PA4 6152 - 772 863 167739 91 chain 70250 chr13 115169878 + 62407957 62408735 L1PA4 6152 + 5373 6151 48291 778 chain 99430 chr13 115169878 + 62418481 62419568 L1PA2 6032 - 0 1087 36917 1087 chain 18535 chr13 115169878 + 62437114 62437429 LTR14A 344 - 0 291 131410 73 5 11 24 28 29 96 31 0 58 chain 50398 chr13 115169878 + 62449273 62449924 LTR76 689 - 35 689 58716 55 1 0 89 5 0 115 8 14 332 0 3 46 chain 20502 chr13 115169878 + 62453570 62453901 THE1B 368 + 2 358 125625 41 6 21 16 4 5 92 1 0 21 35 45 115 chain 5674 chr13 115169878 + 62497685 62497870 L1PA10 4194 - 44 226 90677 34 3 0 4 1 0 26 5 4 42 0 1 44 5 6 21 chain 40828 chr13 115169878 + 62497883 62498382 MER9a3 513 + 14 513 68133 431 2 0 6 2 4 58 chain 7023 chr13 115169878 + 62498389 62498618 L1PA10 4194 - 228 458 90677 49 0 1 180 chain 24332 chr13 115169878 + 62520254 62520529 L1PA5 6144 + 5867 6142 108470 275 chain 51857 chr13 115169878 + 62546163 62546836 LTR12_ 688 - 15 688 57714 527 3 28 27 26 1 90 chain 63123 chr13 115169878 + 62553434 62554164 L1P1 4361 - 438 1170 51392 48 0 1 594 0 1 88 chain 20539 chr13 115169878 + 62581608 62581828 L1PA3long 6157 - 2 222 125514 220 chain 38666 chr13 115169878 + 62610991 62611531 MLT2A2 560 - 10 560 71203 132 0 11 61 1 0 4 6 7 16 10 0 14 3 13 109 1 0 183 chain 4012 chr13 115169878 + 62618714 62618760 MER67C 710 + 224 270 207212 46 chain 16802 chr13 115169878 + 62620211 62620478 LTR12C 1709 - 526 799 136110 24 41 0 40 4 51 158 chain 1724 chr13 115169878 + 62620235 62620276 LTR12C 1709 - 875 916 147147 41 chain 153467 chr13 115169878 + 62636780 62638699 L1PA8A 6298 + 4103 6289 24164 134 0 1 124 1 0 530 3 1 117 11 29 250 6 255 417 1 0 190 0 2 28 1 2 106 chain 3341 chr13 115169878 + 62648780 62648818 L1MA5A 2387 + 522 560 218213 38 chain 51864 chr13 115169878 + 62669799 62670531 LTR12 884 - 15 884 57705 46 12 16 7 0 1 423 2 0 24 24 0 10 0 25 63 0 132 23 0 2 72 1 0 25 chain 13223 chr13 115169878 + 62673488 62673680 L1PB4 2604 - 81 310 147378 47 14 22 39 0 29 92 chain 43602 chr13 115169878 + 62689370 62690158 LTR1 825 + 6 825 64680 62 4 16 16 8 24 61 6 5 38 42 54 22 8 12 11 51 50 29 1 4 15 12 11 185 14 0 62 1 0 51 4 5 39 1 2 45 chain 38334 chr13 115169878 + 62723090 62723586 LTR12F 595 + 0 595 71677 91 25 124 380 chain 80807 chr13 115169878 + 62725334 62726394 MER11B 1079 + 7 1059 43265 257 3 0 117 2 3 175 40 39 70 0 1 103 6 0 287 chain 36207 chr13 115169878 + 62731900 62732375 LTR12F 595 + 0 595 74618 69 1 2 25 0 119 49 1 2 4 1 0 325 chain 118684 chr13 115169878 + 62750438 62752121 L1PA10 4194 + 2468 4161 31541 26 34 22 92 12 4 122 0 1 15 0 1 88 3 0 322 0 3 59 0 16 26 8 20 69 20 17 8 0 7 676 10 4 7 0 5 26 0 1 12 3 0 33 1 0 11 chain 23993 chr13 115169878 + 62773738 62774025 AluSq10 312 - 24 312 110369 155 0 1 132 chain 8683 chr13 115169878 + 62786259 62786421 LTR12D 1347 - 601 906 167289 35 32 66 13 0 109 82 chain 75789 chr13 115169878 + 62790276 62791204 L1PA7 6471 - 5 925 45601 7 2 0 141 1 0 180 0 2 229 9 0 147 0 2 54 0 1 89 8 7 61 chain 27246 chr13 115169878 + 62823537 62823893 L1PA7 6471 + 6108 6465 95442 73 10 9 157 4 6 112 chain 3746 chr13 115169878 + 62846001 62846048 MER4A1 472 - 10 56 211241 34 1 0 12 chain 36076 chr13 115169878 + 62849987 62850439 MER4A1 472 - 17 472 74791 269 0 1 78 0 1 28 0 1 77 chain 12641 chr13 115169878 + 62864915 62865103 L1PA16 3655 + 2749 2965 149676 133 17 45 38 chain 28745 chr13 115169878 + 62867841 62868176 L1PA4 6152 - 9 345 90145 130 0 7 6 6 0 193 chain 26071 chr13 115169878 + 62942084 62942443 THE1B 368 + 0 368 99745 169 1 0 29 35 45 125 chain 114813 chr13 115169878 + 62953176 62954584 LTR12C 1709 + 0 1709 32841 304 6 6 4 1 0 188 1 0 290 1 319 6 2 0 107 0 4 297 17 0 184 chain 24254 chr13 115169878 + 62987183 62987485 AluY 311 + 4 302 108916 101 1 0 28 1 0 149 2 0 20 chain 5262 chr13 115169878 + 63003928 63004037 MER2 342 - 96 206 192389 15 3 4 53 11 0 10 5 16 12 chain 16524 chr13 115169878 + 63019916 63020103 L1PA4 6152 + 5966 6151 136846 180 2 0 5 chain 100425 chr13 115169878 + 63021330 63022595 LTR12C 1709 - 0 1708 36647 62 0 1 21 5 4 26 0 10 41 0 102 214 0 4 65 0 47 131 0 278 89 12 13 316 0 1 283 chain 29021 chr13 115169878 + 63108455 63108765 AluYa5 310 - 0 310 88901 310 chain 8302 chr13 115169878 + 63147832 63147954 Tigger3a 397 - 122 256 169387 88 15 27 19 chain 23080 chr13 115169878 + 63166922 63167184 AluSc5 308 + 11 273 115246 262 chain 317588 chr13 115169878 + 63181935 63186311 L1P3 4156 - 14 4153 12694 27 11 8 400 2 1 179 0 1 506 12 15 372 17 5 419 1 2 627 284 29 275 3 0 5 1 4 257 8 7 4 0 1 132 6 7 80 1 5 48 47 0 11 0 47 39 0 28 34 4 0 162 1 3 82 1 0 55 51 50 212 chain 31347 chr13 115169878 + 63198300 63198722 LTR7B 505 + 0 495 81902 108 0 10 57 0 38 12 3 27 26 0 2 82 1 0 26 0 1 52 14 13 41 chain 21146 chr13 115169878 + 63203417 63203638 AluYa5 310 + 89 310 123385 221 chain 32596 chr13 115169878 + 63217039 63217669 LTR10F 562 + 13 562 79857 73 29 30 18 19 13 43 17 0 28 19 2 15 42 0 19 22 11 46 0 5 138 9 10 36 0 5 57 chain 4309 chr13 115169878 + 63231637 63231792 LTR41B 718 - 556 712 203110 29 90 91 36 chain 2876 chr13 115169878 + 63265743 63265889 MER8 282 - 85 274 227415 25 95 138 26 chain 14418 chr13 115169878 + 63286218 63286383 LTR12 884 + 180 345 143157 165 chain 396439 chr13 115169878 + 63299693 63304477 L1PA6 6164 - 2 6164 10221 96 8 14 41 7 8 471 0 1 215 0 5 662 0 1 767 1 1377 170 27 0 312 1 4 848 0 1 120 0 1 583 1 0 179 1 0 4 0 1 92 0 11 178 chain 5017 chr13 115169878 + 63320116 63320179 MER2 342 + 152 215 194950 63 chain 21778 chr13 115169878 + 63407174 63407453 AluY 311 + 11 285 121105 123 15 10 141 chain 21966 chr13 115169878 + 63412404 63412677 AluSg7 307 + 14 295 120373 95 2 9 13 0 1 163 chain 62192 chr13 115169878 + 63429679 63430726 L1PB1 5432 + 4417 5430 51808 133 16 15 62 13 7 461 13 14 6 3 0 29 1 0 12 22 16 48 2 1 16 1 0 38 72 59 12 2 0 24 1 0 23 1 0 12 5 7 14 1 0 4 chain 22723 chr13 115169878 + 63452255 63452598 THE1A 353 - 0 353 116969 145 0 1 69 33 32 23 1 0 8 3 14 61 chain 27627 chr13 115169878 + 63457571 63457948 THE1C 375 - 0 375 94275 26 1 0 151 14 15 169 2 0 14 chain 6436 chr13 115169878 + 63459956 63460039 L1PA15 4387 - 267 349 181734 16 1 0 66 chain 26328 chr13 115169878 + 63488841 63489210 THE1B 368 - 0 368 98708 75 1 0 120 2 1 20 13 11 99 0 5 22 2 0 15 chain 9615 chr13 115169878 + 63515107 63515252 L1MA3 4352 + 4138 4278 162507 95 8 5 20 2 0 20 chain 10764 chr13 115169878 + 63518418 63518611 THE1B 368 - 170 368 157136 30 33 23 80 5 20 45 chain 118745 chr13 115169878 + 63518622 63520189 THE1B-int 1605 - 12 1589 31517 425 8 1 112 2 1 39 6 5 79 8 0 263 9 10 201 0 25 304 0 1 111 chain 28874 chr13 115169878 + 63523811 63524119 AluYa5 310 - 4 310 89568 213 2 0 93 chain 122027 chr13 115169878 + 63547281 63548854 THE1A-int 1579 - 5 1579 30376 61 0 1 4 2 1 195 0 1 622 14 18 6 5 0 557 1 2 106 chain 14354 chr13 115169878 + 63632342 63632591 MER51A 677 + 424 676 143365 62 58 62 67 1 0 61 chain 28091 chr13 115169878 + 63643187 63643486 AluYb8 318 - 19 318 92679 299 chain 3579 chr13 115169878 + 63662344 63662384 L1MA8 2339 - 302 342 213993 40 chain 46249 chr13 115169878 + 63754872 63755405 L1PA4 6152 - 13 547 61814 230 0 1 303 chain 99164 chr13 115169878 + 63755405 63756540 L1PA4 6152 + 4462 5602 36983 167 1 0 92 0 4 163 0 1 431 0 1 281 chain 4321 chr13 115169878 + 63764012 63764058 MADE1 96 + 50 96 202950 46 chain 8152 chr13 115169878 + 63770247 63770336 L1PA4 6152 - 1891 1980 170215 89 chain 171378 chr13 115169878 + 63770336 63772228 L1PA4 6152 + 4258 6149 21897 1744 1 0 147 chain 271829 chr13 115169878 + 63787683 63791279 HERVH-int 3825 + 0 3825 15093 325 0 30 166 4 5 4 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 24 12 14 1 38 30 24 1 13 25 1 18 22 0 6 1 2 52 1 0 206 0 1 240 15 0 457 6 33 299 0 10 109 5 8 768 0 1 65 146 362 260 0 2 225 chain 25950 chr13 115169878 + 63792850 63793257 LTR7 482 + 0 474 100210 30 0 6 18 16 5 10 8 46 109 8 40 25 5 6 70 1 2 107 chain 59773 chr13 115169878 + 63807731 63808481 LTR12 884 + 1 884 52945 116 0 1 90 1 134 34 2 0 203 7 9 121 1 0 175 chain 198357 chr13 115169878 + 63808502 63811057 HERV9-int 5642 + 0 2466 19331 203 1 0 445 3 1 136 47 46 186 0 1 9 80 0 76 1 0 8 6 0 174 2 0 147 0 1 103 0 1 638 0 1 290 chain 37436 chr13 115169878 + 63811064 63811514 LTR12_ 688 + 239 688 72912 274 1 0 175 chain 14402 chr13 115169878 + 63837928 63838403 LTR12 884 + 78 870 143204 40 5 4 59 1 0 8 96 0 19 0 42 14 145 518 88 chain 15564 chr13 115169878 + 63841402 63841600 L1PB 1623 + 877 1077 139688 172 1 3 25 chain 121116 chr13 115169878 + 63842620 63844278 L1PB1 5432 + 3104 4801 30663 388 1 2 36 1 0 90 0 1 106 36 68 42 0 2 117 0 1 37 54 55 123 1 0 372 0 6 76 3 0 175 chain 15100 chr13 115169878 + 63880337 63880532 LTR12C 1709 + 934 1176 141029 150 1 48 44 chain 8104 chr13 115169878 + 63893327 63893429 MLT1D 503 - 0 102 170468 102 chain 292755 chr13 115169878 + 63905013 63909179 L1PB1 5432 - 8 4094 13839 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 18 0 13 3 0 15 1 0 44 1 0 18 1 0 50 2 0 10 7 3 9 1 0 9 1 0 20 38 15 20 12 1 75 7 14 178 3 4 97 1 2 86 3 0 76 0 6 316 6 5 256 6 5 230 13 6 527 0 1 264 0 4 88 2 0 7 0 1 8 0 1 7 1 0 80 0 1 152 0 3 63 0 5 22 6 5 71 4 0 26 12 13 128 55 0 11 0 55 98 1 0 415 21 23 244 18 0 65 chain 49138 chr13 115169878 + 63927843 63928418 L1PA5 6144 - 5 577 59642 119 6 3 450 chain 5612 chr13 115169878 + 63933916 63934026 L1MC 810 + 212 319 188957 40 30 26 5 0 1 35 chain 60436 chr13 115169878 + 63990304 63991010 L1PA5 6144 - 1290 2000 52616 406 1 4 270 0 1 29 chain 111377 chr13 115169878 + 63991010 63992328 L1PA5 6144 + 4846 6140 33842 308 28 0 495 5 8 153 1 2 328 chain 81037 chr13 115169878 + 64001008 64002113 MER11A 1151 - 1 1151 43174 17 0 1 47 1 0 47 5 6 37 0 1 74 0 35 21 7 4 181 1 0 7 9 0 113 5 4 166 0 1 83 0 11 184 21 31 79 chain 42044 chr13 115169878 + 64014936 64015634 MER50B 698 + 0 698 66569 51 1 3 149 11 46 33 26 9 89 5 7 7 2 0 28 20 0 33 41 40 46 4 5 152 chain 282590 chr13 115169878 + 64016190 64061282 HERVL-int 5654 + 0 5654 14498 75 0 1 109 5 0 56 0 1 83 0 1 6 0 3 5 2 0 7 18 20 257 0 15 196 11 13 56 0 8 58 0 2 635 0 1 60 7 6 315 40567 1082 518 4 5 1114 11 12 36 0 7 178 2 1 58 0 1 43 1 5 122 5 6 47 0 2 208 0 1 83 0 1 124 0 1 10 chain 59174 chr13 115169878 + 64018151 64018894 HERVL-int 5654 + 4899 5647 53167 286 0 1 173 1 4 70 3 4 210 chain 18288 chr13 115169878 + 64030312 64030595 AluSp 311 - 18 311 132107 11 0 1 43 40 35 71 2 0 91 0 16 25 chain 3086 chr13 115169878 + 64061701 64061736 MLT2A1 477 + 440 475 223173 35 chain 63782 chr13 115169878 + 64079341 64080114 LTR17 781 - 7 781 51107 63 1 2 382 1 0 57 1 0 4 1 0 4 3 5 116 0 1 140 chain 15030 chr13 115169878 + 64105128 64105405 THE1A 353 + 78 353 141235 33 1 0 45 59 58 15 0 1 4 7 6 113 chain 60711 chr13 115169878 + 64118901 64119673 LTR17 781 - 8 781 52465 446 1 0 55 28 28 175 0 2 67 chain 51151 chr13 115169878 + 64119673 64120266 LTR30 714 - 120 714 58219 7 0 1 586 chain 114617 chr13 115169878 + 64153900 64155438 THE1A-int 1579 - 5 1579 32920 243 3 20 26 3 12 98 1 2 502 34 38 355 1 6 94 0 1 7 1 0 170 chain 52107 chr13 115169878 + 64167297 64168100 LTR12D 1347 + 588 1346 57558 54 13 0 4 12 0 9 0 1 36 2 19 52 23 0 91 0 2 3 2 0 61 10 9 54 10 0 39 4 0 18 1 0 9 1 0 33 1 0 183 0 3 78 chain 132468 chr13 115169878 + 64228175 64230018 L1PA10 4194 - 33 2025 27532 11 1 0 33 7 2 7 0 2 140 10 9 357 9 186 450 11 1 20 5 2 5 0 3 234 0 2 10 0 1 26 38 21 9 0 1 12 1 0 5 1 2 441 chain 146838 chr13 115169878 + 64256907 64258777 L1PA8 5853 - 31 1902 25040 23 3 0 39 1 0 17 1 0 55 1 0 9 1 0 67 7 5 28 7 8 9 2 1 20 0 1 456 12 14 61 0 2 379 0 3 354 0 1 217 0 1 101 chain 57691 chr13 115169878 + 64260984 64261713 LTR17 781 + 0 781 54138 111 4 17 199 0 4 26 0 55 9 5 6 327 22 0 19 0 1 7 chain 10515 chr13 115169878 + 64267501 64267771 LTR12D 1347 - 595 739 158185 46 139 13 85 chain 5701 chr13 115169878 + 64267602 64267673 LTR12D 1347 - 839 910 188107 71 chain 7848 chr13 115169878 + 64272880 64272995 L1PBa 3878 - 136 248 172013 5 2 0 18 1 0 89 chain 42136 chr13 115169878 + 64311951 64312484 HERVE-int 4064 - 1414 1945 66464 428 13 11 92 chain 45311 chr13 115169878 + 64312563 64313152 HERVE-int 4064 - 1359 1946 62707 478 18 16 93 chain 48009 chr13 115169878 + 64313782 64315045 HERVE-int 4064 - 1350 1946 60478 102 1 2 325 666 0 74 3 0 71 0 1 21 chain 7671 chr13 115169878 + 64314286 64314379 HERVE-int 4064 - 1853 1946 173098 93 chain 32691 chr13 115169878 + 64314464 64314873 HERVE-int 4064 - 1366 1775 79703 409 chain 35419 chr13 115169878 + 64319723 64320175 L1PA5 6144 + 5698 6144 75658 112 0 1 80 2 1 164 11 5 83 chain 32456 chr13 115169878 + 64322883 64323249 L1PA5 6144 + 5778 6144 80100 366 chain 3168 chr13 115169878 + 64324061 64324183 LTR41B 718 + 17 141 221598 33 70 72 19 chain 59391 chr13 115169878 + 64349782 64350565 L1PA7 6471 - 4 765 53183 262 39 14 73 0 7 209 13 6 132 0 3 55 chain 516333 chr13 115169878 + 64350569 64357029 L1PA7 6471 - 1 6471 5543 4 1 0 145 5 0 189 0 1 428 1 0 73 0 6 8 19 0 11 1 22 284 0 1 80 1 2 88 1 3 39 0 1 407 0 4 109 8 5 468 2 1 89 1 0 45 0 1 31 34 34 79 0 1 162 1 0 750 0 13 167 5 6 61 0 1 11 1 0 375 1 0 15 0 6 79 0 5 570 1 2 576 24 0 390 7 8 8 1 0 194 0 1 213 0 1 197 chain 3985 chr13 115169878 + 64399818 64399878 Tigger4 2445 - 1895 1956 207627 23 2 3 35 chain 31282 chr13 115169878 + 64404870 64405234 L1PA5 6144 - 0 366 82018 180 0 3 175 1 0 8 chain 35238 chr13 115169878 + 64407881 64408330 L1PA5 6144 - 3 446 75872 80 11 5 164 2 1 85 0 1 107 chain 47104 chr13 115169878 + 64412223 64412812 HERVE-int 4064 + 2118 2705 61124 93 3 0 253 4 5 236 chain 6407 chr13 115169878 + 64413213 64413291 HERVE-int 4064 + 2120 2199 181976 20 0 1 58 chain 40169 chr13 115169878 + 64413306 64413793 HERVE-int 4064 + 2211 2698 69080 487 chain 47158 chr13 115169878 + 64413878 64414478 HERVE-int 4064 + 2118 2717 61082 93 13 11 388 1 2 105 chain 44795 chr13 115169878 + 64415652 64416237 HERVE-int 4064 + 2118 2705 63298 84 26 25 283 1 3 101 0 1 90 chain 48093 chr13 115169878 + 64416711 64417978 HERVE-int 4064 + 2118 2717 60406 22 0 1 70 3 0 10 667 1 495 chain 38959 chr13 115169878 + 64416816 64417299 HERVE-int 4064 + 2222 2705 70792 483 chain 7140 chr13 115169878 + 64417377 64417470 HERVE-int 4064 + 2118 2211 176472 93 chain 50835 chr13 115169878 + 64418706 64419409 L1PA8 5853 + 5156 5853 58408 364 6 7 37 1 0 48 2 0 66 24 22 40 2 1 18 2 1 93 chain 29356 chr13 115169878 + 64448589 64448898 AluYa5 310 - 1 310 87261 309 chain 6457 chr13 115169878 + 64462038 64462122 MLT1A0 366 + 25 109 181585 8 1 0 21 0 1 54 chain 93863 chr13 115169878 + 64509413 64510972 L1PA8A 6298 - 16 1262 38395 43 7 11 21 1 0 15 15 14 204 324 0 255 1 0 145 0 1 82 3 2 42 0 8 64 0 2 337 chain 151395 chr13 115169878 + 64510973 64512982 L1PA8A 6298 + 3045 5046 24413 140 1 2 158 0 2 45 5 0 7 8 0 19 3 7 206 12 13 54 4 0 171 11 12 86 1 2 175 0 2 162 5 0 19 5 6 226 0 1 259 2 0 175 16 18 34 chain 39839 chr13 115169878 + 64525517 64525977 L1PA4 6152 - 1 455 69558 17 6 0 437 chain 5490 chr13 115169878 + 64539869 64539930 L1PA3long 6157 + 6096 6157 190139 61 chain 33869 chr13 115169878 + 64560807 64561180 L1PA4 6152 - 293 666 77829 373 chain 21840 chr13 115169878 + 64561180 64561440 L1PA4 6152 + 5888 6151 120855 4 1 0 107 1 5 147 chain 17313 chr13 115169878 + 64621680 64622069 MER21A 919 - 0 416 134750 7 2 0 24 3 0 8 3 0 9 3 0 19 17 48 9 14 0 31 1 5 11 6 13 17 53 63 152 chain 10671 chr13 115169878 + 64638624 64638741 L1PA3long 6157 + 6040 6157 157526 117 chain 3965 chr13 115169878 + 64649941 64650225 MER52A 1651 - 1462 1651 207915 35 224 129 25 chain 94733 chr13 115169878 + 64650911 64652192 LTR12C 1709 - 0 1709 38154 50 4 4 28 1 0 215 102 0 37 2 0 18 0 3 126 0 4 21 0 485 204 10 6 15 0 1 22 5 6 83 0 43 338 chain 59411 chr13 115169878 + 64681799 64682466 L1PA4 6152 + 5482 6151 53169 158 0 1 362 0 1 147 chain 3934 chr13 115169878 + 64682501 64682545 MADE1 96 - 52 96 208353 44 chain 507811 chr13 115169878 + 64689028 64695751 L1PA5 6144 - 1 6144 6344 500 0 1 1722 1 9 438 0 1 222 47 0 80 1 0 6 4 5 456 0 1 396 1 2 458 583 12 210 0 20 171 1 0 224 47 38 137 1 0 4 1 2 263 12 13 279 0 15 458 chain 45973 chr13 115169878 + 64693374 64693926 L1PA5 6144 + 5586 6131 62063 417 7 0 128 chain 91696 chr13 115169878 + 64707922 64709208 L1PB1 5432 - 2733 3965 39060 102 0 10 3 10 0 19 1 9 64 0 2 189 67 3 163 0 1 422 0 2 6 3 0 237 chain 12901 chr13 115169878 + 64711729 64712072 L1PB1 5432 + 5105 5415 148622 12 9 6 12 1 0 11 1 0 12 7 3 7 2 0 13 0 3 24 1 0 11 19 17 45 2 1 14 3 0 6 21 11 14 2 0 5 1 0 14 2 0 24 7 6 15 1 0 13 1 0 11 chain 2838 chr13 115169878 + 64717529 64717567 L1MA2 4263 + 4073 4110 228098 32 1 0 5 chain 47712 chr13 115169878 + 64726427 64726996 L1PA8A 6298 - 16 585 60682 569 chain 27328 chr13 115169878 + 64748737 64749044 L1PA4 6152 + 5835 6143 95181 203 0 1 104 chain 64347 chr13 115169878 + 64766697 64767503 L1PA7 6471 - 5 816 50865 178 17 12 166 0 2 166 1 2 128 0 7 150 chain 44274 chr13 115169878 + 64767509 64768065 L1PA7 6471 + 5077 5644 63853 187 2 3 46 7 9 36 0 1 83 0 1 180 0 6 15 chain 18930 chr13 115169878 + 64772492 64772703 L1PA3long 6157 + 5945 6157 130292 62 0 1 149 chain 514223 chr13 115169878 + 64785194 64791310 L1PA5 6144 - 0 6144 5753 239 3 6 182 0 2 399 0 1 21 1 0 147 0 1 114 0 1 409 1 0 328 3 5 65 0 1 300 0 40 865 0 1 703 2 1 11 0 1 113 0 1 1017 9 0 128 0 1 367 15 0 674 chain 147109 chr13 115169878 + 64805299 64806885 L1PA2 6032 - 1 1587 25011 1586 chain 19262 chr13 115169878 + 64806885 64807090 L1PA2 6032 + 4218 4423 128530 205 chain 24982 chr13 115169878 + 64859536 64859842 AluSc 308 - 0 307 104896 282 0 1 24 chain 61821 chr13 115169878 + 64876297 64877017 L1PA4 6152 + 5407 6151 51982 79 0 3 533 0 21 108 chain 29096 chr13 115169878 + 64903302 64903612 AluYb8 318 - 7 318 88572 303 0 1 7 chain 4131 chr13 115169878 + 64936271 64936345 MER84 505 + 7 80 205477 30 14 13 30 chain 440219 chr13 115169878 + 64936995 64942997 HERVL-int 5654 + 0 5646 9052 105 1 0 543 0 1 4 1 0 9 2 1 120 7 1 80 5 10 907 0 1 89 2 1 384 0 13 90 1 0 183 0 2 121 1 0 481 0 1 113 28 0 147 1 2 1148 1 0 5 1 2 31 324 0 467 8 0 114 0 6 43 31 9 108 13 19 19 11 12 20 0 1 233 chain 35855 chr13 115169878 + 64957040 64957483 L1PA7 6471 - 17 460 75055 443 chain 10205 chr13 115169878 + 64961067 64961227 MER30 238 - 6 189 159601 65 9 15 19 9 26 58 chain 18797 chr13 115169878 + 64982226 64982443 AluY 311 + 83 300 130683 217 chain 14703 chr13 115169878 + 64997030 64997200 L1PA3long 6157 - 0 170 142264 4 0 1 150 1 0 15 chain 3448 chr13 115169878 + 65050477 65050593 MER11A 1151 + 791 887 216243 32 17 1 11 36 32 20 chain 28617 chr13 115169878 + 65058553 65058911 L1PA8 5853 + 5482 5853 90668 82 1 0 44 2 0 71 1 0 11 1 0 50 1 19 94 chain 77848 chr13 115169878 + 65076934 65077825 L1PA4 6152 - 1 900 44594 849 0 1 4 0 3 8 0 4 30 chain 23975 chr13 115169878 + 65077826 65078103 L1PA4 6152 + 4970 5247 110478 277 chain 62097 chr13 115169878 + 65082880 65083710 L1PA8 5853 - 0 841 51854 93 1 0 16 1 0 52 1 0 14 1 0 45 8 11 14 2 0 15 0 10 21 1 0 434 0 3 73 0 1 33 0 1 5 chain 47679 chr13 115169878 + 65087462 65088176 L1PA13 3608 - 141 841 60710 19 2 0 5 2 0 47 2 0 5 1 0 35 1 0 9 13 12 60 3 1 39 21 22 53 1 0 28 1 0 242 3 1 122 chain 4668 chr13 115169878 + 65093864 65093957 L1PB4 2604 + 2262 2356 198884 17 25 26 51 chain 59041 chr13 115169878 + 65099573 65100329 LTR17 781 + 0 772 53370 83 3 4 192 0 2 20 11 1 25 0 1 45 0 1 18 1 0 324 0 22 34 chain 157217 chr13 115169878 + 65149938 65152268 L1PA8A 6298 + 4253 6290 23699 102 321 11 459 2 0 105 0 2 69 0 2 137 0 2 32 0 2 199 0 1 113 2 9 69 0 2 434 6 5 181 2 4 97 chain 40449 chr13 115169878 + 65207352 65207800 L1PA3long 6157 + 5702 6150 68665 448 chain 3527 chr13 115169878 + 65217985 65218120 MER76 683 - 90 224 214921 20 11 12 14 58 56 32 chain 4068 chr13 115169878 + 65246019 65246072 L1MA5A 2387 - 87 139 206354 4 1 0 48 chain 48936 chr13 115169878 + 65260580 65261165 LTR10C 591 + 0 585 59785 34 2 0 476 0 2 73 chain 127171 chr13 115169878 + 65279822 65281567 HERV17-int 4347 - 467 4334 28774 144 0 1672 9 0 1 147 5 4 78 0 2 36 0 7 165 5 7 90 0 1 49 3 0 29 1 4 12 20 9 60 0 1 78 0 2 80 1 23 86 0 8 124 10 0 46 0 4 42 1 0 43 7 12 9 2 0 5 8 10 16 0 430 64 1 0 33 6 0 99 1 0 26 2 0 35 1 0 51 1 0 14 chain 100231 chr13 115169878 + 65294546 65295868 L1P3 4156 + 2806 4139 36713 77 0 4 84 20 21 64 0 5 33 5 9 114 0 1 281 0 1 108 0 1 214 2 3 175 5 1 105 2 0 7 2 1 24 chain 21975 chr13 115169878 + 65302961 65303227 AluY 311 + 0 298 120333 25 0 30 76 0 2 165 chain 13298 chr13 115169878 + 65304613 65304859 Tigger2 2703 + 2272 2536 147091 95 36 50 32 20 24 63 chain 4008 chr13 115169878 + 65304859 65304903 U2 167 - 114 158 203458 44 chain 58129 chr13 115169878 + 65304906 65305713 L1PA8 5853 + 5030 5847 53911 72 1 4 364 18 17 28 1 0 46 0 16 30 3 1 70 2 1 9 9 7 44 3 2 22 1 0 84 chain 15023 chr13 115169878 + 65315453 65315631 MER57A1 433 - 253 431 141264 178 chain 34839 chr13 115169878 + 65325076 65325495 MLT2A1 477 - 54 477 76419 38 0 2 211 0 4 27 0 1 77 3 0 63 chain 11592 chr13 115169878 + 65331490 65331638 LTR8 732 - 575 723 153924 148 chain 146428 chr13 115169878 + 65345510 65347355 L1PA8A 6298 - 8 1867 25101 717 1 2 97 0 1 463 7 8 183 1 0 130 1 2 26 0 10 205 1 2 13 chain 77415 chr13 115169878 + 65347355 65348427 L1P3 4156 + 3063 4135 44741 34 3 0 26 0 1 308 0 5 81 0 1 12 3 1 20 4 0 6 0 4 65 6 7 397 12 0 8 5 17 51 2 0 6 3 2 20 chain 5595 chr13 115169878 + 65349502 65349595 L1PB1 5432 - 9 97 189135 19 1 0 10 2 1 23 1 0 24 2 0 11 chain 6032 chr13 115169878 + 65384144 65384215 L1PB4 2604 - 359 430 184954 71 chain 490726 chr13 115169878 + 65401880 65408302 L1PA7 6471 + 0 6469 7330 180 27 18 46 0 10 64 7 23 44 0 2 36 24 37 294 1 0 29 1 0 87 1 0 106 2 0 263 0 2 119 0 1 398 5 6 265 1 0 133 0 4 182 6 5 66 5 0 81 7 9 129 5 6 59 0 4 378 2 3 11 16 20 105 16 18 4 0 1 236 3 2 196 0 1 233 28 22 109 0 1 5 2 1 306 0 1 363 0 1 138 0 3 83 3 0 130 0 1 4 1 0 278 0 1 4 1 0 102 0 1 151 0 3 51 1 4 259 7 6 192 0 1 306 0 1 25 chain 13829 chr13 115169878 + 65429107 65429321 MSTA 426 + 192 408 145138 22 29 31 163 chain 9218 chr13 115169878 + 65432604 65432732 MER85 139 + 0 139 164466 95 4 7 7 0 8 22 chain 28228 chr13 115169878 + 65436665 65436975 AluYa5 310 - 3 310 92201 189 3 0 118 chain 29403 chr13 115169878 + 65450950 65451296 L1PA7 6471 - 4 347 87051 226 3 0 117 chain 10842 chr13 115169878 + 65464967 65465245 Tigger2a 444 - 63 443 156824 38 39 43 92 9 0 9 59 166 32 chain 476710 chr13 115169878 + 65551310 65557614 L1PA7 6471 - 5 6471 7841 5 3 0 482 4 14 270 4 8 37 0 1 19 19 6 507 0 194 251 0 4 29 0 1 112 9 11 155 8 0 128 7 6 16 1 4 203 0 1 163 9 3 281 1 2 21 0 2 133 0 2 5 6 4 196 120 0 232 1 0 70 1 4 363 1 3 38 2 1 12 1 2 430 1 0 281 0 1 270 0 1 244 30 139 75 22 0 365 0 1 7 4 3 217 36 34 183 20 20 194 chain 7921 chr13 115169878 + 65554400 65554492 L1PA7 6471 - 1642 1734 171514 92 chain 75943 chr13 115169878 + 65560342 65561239 L1PA6 6164 - 8 905 45520 897 chain 53213 chr13 115169878 + 65592161 65592860 L1PA8 5853 - 1458 2162 56884 55 3 0 38 0 6 307 5 6 194 0 1 97 chain 67235 chr13 115169878 + 65619089 65619892 L1PA5 6144 + 5324 6144 49552 325 0 16 147 0 1 181 1 2 48 12 11 89 chain 3407 chr13 115169878 + 65623124 65623167 MER51A 677 - 346 389 212886 43 chain 3802 chr13 115169878 + 65623167 65623207 MER51A 677 - 318 358 210373 40 chain 8933 chr13 115169878 + 65650087 65650199 MER85 139 - 17 139 165962 18 0 10 94 chain 7258 chr13 115169878 + 65667014 65667184 THE1B 368 - 204 365 175721 41 59 55 26 5 0 39 chain 26383 chr13 115169878 + 65670326 65670633 AluYk4 311 + 0 305 98482 185 0 1 55 3 0 64 chain 5743 chr13 115169878 + 65677060 65677143 L1MC 810 - 51 134 187700 15 1 2 12 1 0 54 chain 452713 chr13 115169878 + 65678059 65683750 L1PA7 6471 - 19 5735 8666 176 8 0 116 0 1 384 1 2 102 0 9 41 1 4 19 25 27 216 3 1 29 15 10 323 5 1 65 1 2 119 0 2 489 3 1 475 1 2 180 11 20 139 2 0 409 6 5 64 1 2 385 4 1 121 1 2 5 2 0 159 0 6 77 1 0 144 0 1 63 6 18 110 1 5 200 0 3 43 7 0 167 1 4 90 0 2 675 chain 3477 chr13 115169878 + 65714226 65714269 MLT1A 405 - 304 347 215700 43 chain 4584 chr13 115169878 + 65746970 65747067 MER58A 224 - 81 178 199817 32 31 31 34 chain 157417 chr13 115169878 + 65756231 65758283 L1P2 5180 - 1204 3257 23663 269 9 7 4 0 1 173 30 8 255 11 27 34 4 7 401 0 4 274 0 1 186 1 0 236 0 1 165 chain 175296 chr13 115169878 + 65758283 65760487 L1PA7 6471 + 4295 6469 21420 117 0 2 59 0 1 44 1 3 155 0 4 310 2 1 86 34 3 541 1 0 66 19 16 756 3 0 10 chain 78502 chr13 115169878 + 65765344 65766294 L1PA7 6471 - 10 962 44271 462 2 0 297 1 0 73 6 11 109 chain 28075 chr13 115169878 + 65775805 65776173 THE1B 368 + 0 368 92739 98 5 6 64 1 0 200 chain 29452 chr13 115169878 + 65777543 65777912 THE1B 368 + 0 368 86831 168 1 0 200 chain 91001 chr13 115169878 + 65793868 65794913 L1PA5 6144 - 1966 3019 39239 663 0 6 217 1 0 40 0 2 47 0 1 77 chain 170101 chr13 115169878 + 65794913 65796916 L1PA5 6144 + 4161 6138 22037 162 0 1 504 0 10 332 2 1 101 40 1 385 0 3 477 chain 47276 chr13 115169878 + 65809590 65810280 L1PB1 5432 - 338 1025 60984 65 0 7 6 10 2 198 9 0 10 1 9 28 24 15 128 3 0 20 1 0 140 0 11 23 0 1 24 chain 3763 chr13 115169878 + 65814828 65814882 MER4A 717 - 244 299 210909 14 2 3 38 chain 17824 chr13 115169878 + 65826015 65826278 L1PA8 5853 + 5599 5853 133326 11 2 0 69 4 0 11 1 0 4 1 0 46 2 1 9 0 1 9 1 0 93 chain 77430 chr13 115169878 + 65847582 65848663 MER11A 1151 + 0 1147 44763 55 0 99 76 1 0 64 4 0 32 1 3 105 9 10 94 0 1 145 5 6 145 25 1 11 6 13 24 18 0 36 0 1 60 6 7 159 chain 18266 chr13 115169878 + 65865887 65866105 AluY 311 + 11 229 132162 218 chain 5963 chr13 115169878 + 65870069 65870213 L1MC1 2226 + 435 579 185576 17 0 13 7 21 9 15 7 11 6 2 0 38 0 1 20 4 0 7 chain 4970 chr13 115169878 + 65871417 65871515 L1MA8 2339 + 2160 2249 195471 38 20 13 22 2 0 16 chain 25751 chr13 115169878 + 65882870 65883218 THE1B 368 - 2 368 101081 167 1 5 22 1 0 107 6 21 44 chain 65379 chr13 115169878 + 65925691 65926404 L1PA3long 6157 - 0 711 50388 651 2 0 60 chain 28124 chr13 115169878 + 65926404 65926731 MER41A 554 - 227 554 92557 327 chain 31007 chr13 115169878 + 65994979 65995346 L1PB 1623 - 518 885 82496 367 chain 13121 chr13 115169878 + 65995587 65995900 L1PB 1623 + 1310 1586 147763 35 0 1 12 4 5 4 0 1 78 1 0 7 2 1 30 1 0 4 1 0 5 87 55 5 2 0 22 2 0 11 chain 500281 chr13 115169878 + 66009548 66015647 L1PA6 6164 + 0 6156 6821 371 25 32 57 51 50 259 2 35 504 24 0 115 0 7 683 0 3 201 0 8 230 0 1 200 0 1 432 0 1 112 1 0 131 0 1 358 0 1 886 0 1 296 0 17 410 0 1 599 15 16 137 chain 314211 chr13 115169878 + 66036449 66040402 L1PA7 6471 - 6 3942 12842 142 25 26 579 2 0 97 1 0 150 7 3 509 0 1 238 0 1 4 10 9 31 0 4 55 0 1 301 0 3 104 6 7 198 12 4 166 1 0 220 2 3 53 3 7 155 0 1 359 0 1 332 1 2 58 20 0 112 chain 36903 chr13 115169878 + 66058320 66058785 L1PA8A 6298 - 14 483 73651 81 0 5 9 10 7 75 0 2 290 chain 44800 chr13 115169878 + 66064976 66065488 L1PA6 6164 + 4131 4643 63290 512 chain 26994 chr13 115169878 + 66065490 66065803 L1PA6 6164 + 4643 4951 96302 183 5 0 125 chain 53653 chr13 115169878 + 66065811 66066429 L1PA6 6164 + 5369 5987 56582 618 chain 13480 chr13 115169878 + 66066433 66066601 L1PA6 6164 + 5998 6162 146414 158 4 0 6 chain 10994 chr13 115169878 + 66137841 66137964 L1PA5 6144 - 8 131 155870 123 chain 98645 chr13 115169878 + 66137964 66139116 L1PA5 6144 + 4870 6017 37114 513 1 0 303 0 2 301 0 1 8 7 0 19 chain 486282 chr13 115169878 + 66159307 66165456 L1PA5 6144 + 1 6141 7509 119 0 14 76 2 1 29 37 40 54 46 47 26 8 14 165 7 0 111 0 1 27 1 2 142 0 1 82 25 0 213 13 4 239 1 6 232 4 1 5 0 3 677 0 2 5 2 0 417 20 13 407 1 0 115 0 1 5 1 0 863 0 1 16 1 4 81 0 8 36 0 1 321 6 0 280 1 0 4 6 8 1159 0 1 61 chain 33188 chr13 115169878 + 66174169 66174539 L1P2 5180 - 2940 3310 78915 370 chain 18940 chr13 115169878 + 66174539 66174758 L1PA5 6144 + 5911 6130 130253 219 chain 70739 chr13 115169878 + 66188326 66189101 L1PA3long 6157 - 0 775 48047 775 chain 93722 chr13 115169878 + 66193692 66195224 L1PB 1623 + 102 1586 38429 10 1 0 5 1 0 67 12 14 6 5 0 13 26 28 24 1 0 109 38 39 68 1 0 111 0 3 370 0 1 29 2 4 150 2 1 153 15 1 119 0 1 14 14 12 31 100 68 22 2 0 11 chain 44773 chr13 115169878 + 66210401 66211010 LTR71B 605 + 0 605 63314 141 29 37 24 0 1 67 16 3 332 chain 38488 chr13 115169878 + 66236319 66236859 LTR12_ 688 + 6 673 71456 53 3 44 35 24 8 21 1 0 135 0 1 4 1 0 49 0 103 214 chain 11164 chr13 115169878 + 66240561 66240689 L1PA4 6152 - 9 137 155572 128 chain 395805 chr13 115169878 + 66245037 66250087 L1P2 5180 - 119 5177 10249 337 6 5 275 0 1 274 0 1 243 1 2 6 1 0 38 0 1 396 0 10 213 0 4 11 8 12 449 7 0 129 0 1 124 2 3 205 1 0 57 11 1 230 10 6 161 1 11 669 0 1 55 15 17 79 0 1 112 9 5 12 0 4 107 1 0 6 1 0 224 1 0 48 1 0 264 8 7 35 0 1 14 1 0 28 0 5 8 21 15 135 chain 127973 chr13 115169878 + 66259265 66260704 L1PA5 6144 - 0 1443 28572 845 1 5 593 chain 91531 chr13 115169878 + 66260704 66261737 L1PA5 6144 + 3503 4538 39031 803 0 1 181 0 1 49 chain 101646 chr13 115169878 + 66279515 66280684 L1PA3long 6157 - 0 1171 36358 5 2 0 254 1 0 98 1 2 46 1 2 449 5 6 188 0 2 119 chain 11563 chr13 115169878 + 66308021 66308217 L1PA7 6471 + 6224 6441 154052 83 46 67 67 chain 49534 chr13 115169878 + 66322303 66323002 LTR17 781 - 86 781 59363 155 46 45 93 0 1 74 1 0 72 8 7 54 20 19 118 1 0 57 chain 74137 chr13 115169878 + 66345537 66346544 MER11A 1151 + 0 1150 46442 45 10 109 141 1 0 26 0 5 62 0 1 54 0 1 94 0 1 21 1 0 122 6 9 9 2 0 5 0 2 36 0 4 56 1 0 15 7 41 58 0 1 53 4 5 117 4 0 57 chain 28694 chr13 115169878 + 66352976 66353341 L1PA7 6471 - 3 375 90351 10 0 4 133 7 8 110 0 2 105 chain 3159 chr13 115169878 + 66358997 66359037 MER58A 224 + 173 213 221758 40 chain 3914 chr13 115169878 + 66471467 66471733 L1MA8 2339 - 75 326 208639 6 1 0 13 62 60 22 78 46 13 35 55 36 chain 19103 chr13 115169878 + 66480920 66481275 THE1C 375 + 8 375 129808 96 39 39 36 1 0 4 0 4 6 39 49 108 1 0 25 chain 8770 chr13 115169878 + 66481430 66481533 THE1C-int 1605 + 153 256 166816 103 chain 37731 chr13 115169878 + 66485037 66485565 L1PA8 5853 + 5327 5853 72513 62 0 8 167 1 0 49 8 6 52 4 0 8 1 0 61 2 1 15 5 4 93 chain 29781 chr13 115169878 + 66488144 66488573 MLT2A1 477 + 1 477 85540 139 11 12 16 1 5 21 0 3 45 2 3 135 4 43 34 1 0 20 chain 21953 chr13 115169878 + 66525524 66525788 L1PA7 6471 - 5 264 120410 12 6 0 115 0 1 131 chain 4957 chr13 115169878 + 66545463 66545539 MLT1B 390 + 287 371 195611 9 6 0 51 0 14 10 chain 13428 chr13 115169878 + 66550952 66551165 THE1B 368 + 134 356 146586 40 1 0 24 35 45 113 chain 32371 chr13 115169878 + 66565972 66566401 LOR1b 457 + 8 457 80240 21 0 11 9 1 0 95 4 0 108 0 14 191 chain 12748 chr13 115169878 + 66566920 66567110 LTR8 732 - 411 600 149259 85 16 15 89 chain 85674 chr13 115169878 + 66567134 66568082 L1PA4 6152 - 1 949 41282 948 chain 75979 chr13 115169878 + 66568082 66568915 L1PA4 6152 + 4373 5205 45389 178 1 0 654 chain 10456 chr13 115169878 + 66583830 66585012 LTR12C 1709 + 773 1709 158467 60 38 285 39 977 484 68 chain 50640 chr13 115169878 + 66597026 66597594 L1PA3long 6157 - 2934 3502 58314 52 6 5 445 0 1 65 chain 261913 chr13 115169878 + 66597594 66600504 L1PA3long 6157 + 3228 6142 15590 1134 0 4 273 1 0 110 1 0 459 0 1 96 1 2 835 chain 13077 chr13 115169878 + 66608792 66608935 L1PA3long 6157 + 5407 5550 147930 143 chain 55741 chr13 115169878 + 66608936 66609543 L1PA3long 6157 + 5550 6157 55276 607 chain 12212 chr13 115169878 + 66623000 66623407 THE1B 368 - 0 368 151376 56 16 15 12 14 0 5 31 0 29 135 140 28 18 20 63 chain 3575 chr13 115169878 + 66642072 66642126 MER2 342 + 267 322 214045 27 3 4 24 chain 23552 chr13 115169878 + 66646389 66646682 MER41C 542 + 17 310 112841 32 0 1 102 1 0 158 chain 39233 chr13 115169878 + 66648041 66648576 MER41A 554 - 6 554 70408 71 4 9 30 0 3 23 1 4 169 12 13 134 0 1 91 chain 5186 chr13 115169878 + 66654009 66654108 ERVL-B4-int 2334 + 1201 1301 193189 43 21 22 35 chain 26877 chr13 115169878 + 66704286 66704573 AluYa5 310 - 8 310 96712 111 0 15 176 chain 31272 chr13 115169878 + 66715463 66715895 LTR7 482 - 0 482 82037 176 0 1 8 0 31 43 1 12 45 21 28 138 chain 299563 chr13 115169878 + 66717164 66720736 HERVH-int 3825 - 9 3825 13448 360 0 1 117 8 218 593 1 0 322 0 1 119 3 0 369 4 31 462 15 0 442 0 3 13 0 2 6 0 1 57 2 1 42 1 0 16 6 36 24 1 0 10 1 0 38 5 0 350 3 0 182 chain 29672 chr13 115169878 + 66720750 66721168 LTR7 482 - 12 482 85931 85 0 2 77 0 1 9 0 31 37 6 17 45 21 28 138 chain 6018 chr13 115169878 + 66737019 66737089 MSTB 430 + 360 430 185064 70 chain 15869 chr13 115169878 + 66749694 66749880 L1PA3long 6157 - 0 184 138750 7 2 0 177 chain 342183 chr13 115169878 + 66752655 66757146 HERVL-int 5654 - 0 4478 11825 6 0 1 632 1 17 99 0 18 123 1 0 221 10 10 323 0 1 59 0 1 105 1 2 83 0 4 32 0 3 104 0 3 5 5 2 177 5 8 581 1 0 163 1 0 54 81 13 379 6 0 339 2 11 206 0 1 10 0 1 44 13 14 58 7 11 554 chain 40223 chr13 115169878 + 66758406 66758942 MLT2A2 560 - 0 550 68999 88 12 13 46 3 14 43 0 2 344 chain 15475 chr13 115169878 + 66778840 66779049 L1PA8 5853 + 5647 5853 139977 30 1 0 62 3 2 19 1 0 93 chain 22371 chr13 115169878 + 66780048 66780406 THE1B 368 - 0 368 118622 75 24 23 58 14 12 32 2 0 104 5 20 44 chain 40398 chr13 115169878 + 66800500 66800951 LTR7 482 - 0 482 68739 187 0 31 264 chain 291011 chr13 115169878 + 66802208 66806019 HERVH-int 3825 - 0 3825 13960 369 0 1 117 8 218 39 9 11 1066 0 4 284 8 35 25 0 5 209 0 1 17 0 1 200 15 0 444 1 0 49 2 1 11 0 20 21 42 1 20 30 26 11 1 0 15 70 0 24 1 0 5 38 0 6 91 0 37 5 0 309 0 11 212 chain 2510 chr13 115169878 + 66805327 66805359 HERVH-int 3825 - 3255 3343 184294 30 0 56 2 chain 3137 chr13 115169878 + 66805365 66805405 HERVH-int 3825 - 3349 3389 184294 40 chain 39677 chr13 115169878 + 66806021 66806472 LTR7 482 - 0 482 69791 204 0 31 21 0 1 4 1 0 221 chain 24056 chr13 115169878 + 66810901 66811243 L1PB 1623 - 135 475 110008 4 1 0 26 8 7 5 1 0 83 4 5 210 chain 537367 chr13 115169878 + 66827898 66833919 L1PA3long 6157 - 1 6157 3260 149 7 7 252 0 1 1301 0 1 1590 6 7 157 0 1 1786 0 128 34 1 0 57 0 3 529 1 2 151 chain 149105 chr13 115169878 + 66854784 66856552 L1PA6 6164 - 7 1775 24739 202 0 3 53 1 2 1211 5 1 296 chain 78803 chr13 115169878 + 66860644 66861726 MER11B 1079 - 0 1079 44147 11 1 0 12 6 5 20 0 1 153 0 1 80 2 1 26 1 3 25 10 0 190 8 9 5 1 0 101 14 13 63 3 6 36 0 4 314 chain 4505 chr13 115169878 + 66929083 66929186 MER5A1 166 - 59 153 200729 13 1 0 9 8 4 37 6 0 6 6 8 17 chain 22524 chr13 115169878 + 66942805 66943126 THE1B 368 - 0 338 117918 100 0 1 6 7 12 57 2 0 17 1 0 86 0 1 5 2 0 24 0 15 14 chain 22664 chr13 115169878 + 66982182 66982418 AluYb8 318 - 11 247 117248 236 chain 109542 chr13 115169878 + 66991163 66992583 L1PA7 6471 - 4 1448 34310 143 18 17 212 1 2 4 1 0 121 1 2 11 0 18 91 0 1 58 5 6 65 0 1 96 1 0 463 0 3 59 10 11 60 chain 313850 chr13 115169878 + 66993493 66997647 L1P3 4156 + 4 4139 12865 176 38 39 22 26 25 54 1 0 68 4 0 21 10 4 12 7 8 54 8 0 30 10 9 316 13 14 222 14 4 186 9 11 5 1 0 74 0 1 264 0 5 259 0 3 208 0 15 282 6 7 49 19 22 164 2 0 109 0 3 344 0 4 402 2 0 32 1 0 56 0 1 49 4 5 39 4 3 186 15 1 126 6 0 110 2 0 7 2 1 24 chain 24013 chr13 115169878 + 67011270 67011558 AluY 311 + 13 304 110254 117 1 2 83 0 1 7 0 1 80 chain 11496 chr13 115169878 + 67025160 67025289 L1PA5 6144 + 6003 6132 154311 129 chain 43696 chr13 115169878 + 67053659 67054229 LTR12 884 + 0 634 64572 25 1 0 52 1 67 196 1 2 35 2 0 257 chain 61858 chr13 115169878 + 67054719 67055444 L1PA7 6471 + 5737 6470 51969 447 0 6 266 0 2 12 chain 10865 chr13 115169878 + 67064118 67064253 L1PA6 6164 - 3 138 156722 135 chain 38593 chr13 115169878 + 67084499 67084959 L1PA5 6144 - 5 466 71298 134 3 6 6 3 0 179 3 4 132 chain 102084 chr13 115169878 + 67135014 67136300 LTR12C 1709 + 0 1709 36243 291 5 7 40 0 43 75 8 5 189 0 278 184 1 0 4 4 2 106 0 4 188 0 102 191 chain 3962 chr13 115169878 + 67169036 67169121 MER67C 710 + 13 99 207961 9 6 0 16 0 7 19 5 7 7 2 0 21 chain 14126 chr13 115169878 + 67175952 67176154 Tigger3b 1229 + 135 342 144125 150 22 27 30 chain 4823 chr13 115169878 + 67186623 67186760 MER53 195 - 4 156 197096 46 57 73 4 1 0 29 chain 265457 chr13 115169878 + 67187834 67192076 MER61-int 3695 + 0 3695 15418 30 4 0 20 1 0 6 0 1 42 1 0 172 2 1 46 5 6 35 0 4 47 4 5 30 0 1 89 11 8 99 2 0 6 0 1 130 0 3 85 3 2 90 0 8 14 594 0 269 0 1 157 0 1 64 1 6 90 8 12 38 0 5 250 0 1 117 0 1 132 11 7 10 3 8 60 16 11 7 0 1 108 17 28 400 1 0 88 12 11 18 5 0 16 1 0 126 1 2 65 0 1 58 7 8 197 1 0 275 0 9 11 3 14 31 chain 51083 chr13 115169878 + 67188811 67189401 LTR10C 591 - 0 591 58263 81 0 2 99 1 0 409 chain 113644 chr13 115169878 + 67195897 67197330 LTR12C 1709 + 0 1709 33189 464 0 2 25 3 1 158 0 278 184 10 6 101 5 9 75 11 10 4 0 1 223 1 0 86 1 0 82 chain 22683 chr13 115169878 + 67260238 67260575 THE1C 375 + 0 335 117148 141 19 15 29 1 2 26 5 6 116 chain 28807 chr13 115169878 + 67282170 67282480 AluYa5 310 - 0 310 89860 310 chain 557937 chr13 115169878 + 67311614 67317639 L1PA2 6032 + 0 6032 506 614 0 4 700 0 1 878 0 1 370 0 1 3463 chain 21406 chr13 115169878 + 67328249 67328517 L1PA7 6471 + 6204 6468 122485 94 5 1 169 chain 195767 chr13 115169878 + 67350244 67352409 L1PA3long 6157 + 3978 6142 19521 1586 7 6 572 chain 28866 chr13 115169878 + 67399466 67399766 AluYg6 310 - 10 310 89598 300 chain 11369 chr13 115169878 + 67403759 67403878 AluYc 301 + 181 300 154818 119 chain 39951 chr13 115169878 + 67444069 67444509 L1PA3long 6157 - 1014 1454 68729 440 chain 92446 chr13 115169878 + 67444509 67445530 L1PA3long 6157 + 5136 6157 38827 1021 chain 91751 chr13 115169878 + 67573617 67574623 L1PA3long 6157 + 5149 6157 39051 362 2 0 22 0 3 471 0 1 149 chain 24225 chr13 115169878 + 67600214 67600479 L1PA3long 6157 - 2238 2503 108041 265 chain 202262 chr13 115169878 + 67600479 67602710 L1PA3long 6157 + 3928 6157 19047 994 3 0 901 0 1 333 chain 4058 chr13 115169878 + 67615386 67615493 MER44D 709 - 589 698 206513 12 0 1 29 44 45 22 chain 13491 chr13 115169878 + 67616345 67616572 THE1C 375 - 0 221 146384 79 3 0 47 25 21 44 5 6 24 chain 34749 chr13 115169878 + 67704581 67705084 LTR46 455 + 0 455 76546 188 0 1 4 55 11 104 1 0 104 4 0 43 chain 10022 chr13 115169878 + 67711149 67711265 L1PA5 6144 + 6028 6144 160471 116 chain 10854 chr13 115169878 + 67712574 67712919 MER51B 395 + 2 387 156767 38 7 26 25 50 0 24 8 64 17 76 0 10 22 113 68 chain 13767 chr13 115169878 + 67762937 67763268 L1PB1 5432 - 8 327 145372 6 1 0 14 1 0 13 1 0 21 0 1 4 8 6 13 24 19 19 20 6 6 2 0 16 1 0 40 10 9 10 2 1 53 2 0 8 6 2 11 0 3 7 0 19 12 chain 25540 chr13 115169878 + 67787066 67787367 AluY 311 + 5 311 102051 120 1 2 141 0 4 39 chain 40071 chr13 115169878 + 67833300 67833867 MER41A 554 - 0 554 69222 5 1 0 4 0 1 168 26 20 32 1 0 4 6 0 320 chain 7277 chr13 115169878 + 67848768 67848860 L1MA5 2750 + 2539 2630 175604 25 1 0 66 chain 29808 chr13 115169878 + 67911621 67911968 L1PA7 6471 - 12 360 85410 321 0 1 26 chain 30438 chr13 115169878 + 67912013 67912407 MLT2A1 477 + 0 385 83551 113 1 2 53 6 3 194 7 0 20 chain 151064 chr13 115169878 + 67923470 67925279 L1PA7 6471 - 6 1817 24467 6 3 0 667 0 9 80 1 0 82 2 0 666 1 0 301 chain 17103 chr13 115169878 + 67949777 67949994 AluY 311 + 93 309 135304 29 3 5 166 3 0 16 chain 4809 chr13 115169878 + 67954661 67954728 LTR1B 797 + 677 741 197245 31 3 0 33 chain 40059 chr13 115169878 + 67971384 67971846 LTR2 463 + 0 463 69234 367 0 1 95 chain 510838 chr13 115169878 + 67972528 67979574 HERVE_a-int 7009 + 135 7008 6081 21 3 0 28 13 11 57 18 14 24 1 0 4 1 0 7 1 0 8 1 0 14 28 21 5 1 0 9 8 6 14 34 0 34 6 4 23 1 0 39 6 5 23 1 0 52 1 0 34 2 1 98 1 0 11 2 1 14 2 1 33 1 0 13 1 0 52 2 0 27 1 0 63 4 3 27 12 10 71 2 1 32 1 0 39 2 0 15 1 0 52 1 0 21 5 4 11 8 6 14 4 0 21 1 0 3 1 0 16 1 0 22 1 0 5 1 0 7 1 0 10 1 0 6 1 0 4 1 0 56 3 1 57 1 0 23 1 0 11 8 7 113 1 0 18 2 1 18 4 3 10 1 0 18 1 0 10 2 1 4 1 0 18 1 0 43 1 0 38 1 0 62 1 0 38 1 0 6 2 1 32 2 1 44 1 0 24 1 0 15 1 0 25 1 0 12 1 0 94 3 2 24 6 4 29 37 30 8 1 0 144 1 0 14 2 1 37 1 0 167 2 1 153 1 9 86 0 1 232 0 17 492 1 0 392 0 2 818 12 11 5 0 1 151 0 1 217 1 3 151 9 0 113 1 0 27 2 1 8 1 0 74 1 0 6 1 0 42 1 0 14 10 9 55 1 0 32 1 0 12 1 0 258 2 0 98 6 5 14 1 0 3 1 0 54 2 0 23 1 0 12 2 1 76 5 3 138 1 0 43 1 0 25 7 6 10 1 0 16 1 0 5 2 0 7 1 0 37 1 0 21 7 6 41 1 0 4 1 0 23 11 9 54 1 0 37 3 0 54 3 1 21 4 5 31 1 0 6 3 1 13 1 0 17 8 7 27 58 48 24 3 1 4 1 0 13 chain 36062 chr13 115169878 + 67979583 67980046 LTR2 463 + 0 463 74814 53 1 5 152 27 22 136 0 1 94 chain 114631 chr13 115169878 + 67992303 67993675 L1PA7 6471 - 4 1380 32910 8 3 0 252 0 1 135 0 1 455 1 0 409 0 2 52 0 4 57 chain 3084 chr13 115169878 + 68013681 68013714 MER58A 224 + 45 78 223264 33 chain 2988 chr13 115169878 + 68022495 68022529 MLT2D 439 - 405 439 225279 34 chain 68047 chr13 115169878 + 68024328 68025167 L1PA8A 6298 - 15 856 49228 104 1 0 166 0 3 406 0 1 113 2 1 47 chain 475957 chr13 115169878 + 68026410 68032126 L1PA6 6164 + 0 6160 7857 70 2 0 438 17 2 190 0 2 495 0 2 1040 0 1 94 21 4 554 10 13 285 2 1 29 1 2 78 1 0 586 0 465 809 0 1 242 0 1 377 0 4 375 chain 68585 chr13 115169878 + 68054215 68055015 L1PA5 6144 - 4 805 48996 336 1 0 274 7 9 182 chain 13314 chr13 115169878 + 68098748 68098984 L1PB4 2604 + 2300 2531 147035 54 39 35 17 0 1 84 15 13 27 chain 14989 chr13 115169878 + 68099483 68099920 THE1B-int 1605 + 36 512 71314 159 0 14 223 12 37 43 chain 48995 chr13 115169878 + 68099954 68100514 L1PA4 6152 - 1 561 59752 142 0 1 110 1 0 307 chain 3224 chr13 115169878 + 68100514 68100608 THE1B-int 1605 + 521 615 71314 94 chain 71666 chr13 115169878 + 68136640 68137433 L1PA3long 6157 - 1 798 47588 50 0 4 743 chain 188197 chr13 115169878 + 68137433 68139499 L1PA3long 6157 + 3301 5374 20217 585 0 1 753 0 1 504 0 5 224 chain 4675 chr13 115169878 + 68158682 68158740 L1MA4 2864 - 63 119 198805 34 2 0 22 chain 4033 chr13 115169878 + 68161313 68161404 L1MA4A 3247 + 1457 1560 206886 36 34 46 21 chain 501998 chr13 115169878 + 68162479 68168595 L1PA6 6164 + 0 6151 6728 410 0 1 6 11 10 365 17 0 294 4 6 84 21 24 250 2 0 883 12 0 857 0 2 23 1 0 7 6 7 71 1 0 396 0 4 87 0 7 246 19 30 292 0 4 117 0 31 1072 0 2 289 0 1 125 1 10 4 1 0 5 8 0 129 chain 6416 chr13 115169878 + 68197764 68197888 MER1A 529 + 402 529 181895 38 32 35 54 chain 122889 chr13 115169878 + 68248649 68250403 L1PBa 3878 - 925 2704 30083 15 2 0 30 2 14 128 15 6 52 0 2 244 6 7 48 0 1 11 0 1 111 0 1 109 1 2 98 0 5 6 0 1 103 7 6 30 1 0 302 27 15 173 48 73 185 chain 52383 chr13 115169878 + 68250403 68251381 L1PB1 5432 + 4601 5423 57331 24 4 1 26 0 1 210 0 1 41 0 1 192 120 3 15 5 0 23 41 32 49 3 2 9 6 5 44 1 0 16 24 12 19 2 0 4 1 0 13 6 4 22 1 0 20 2 1 13 1 0 14 2 0 5 chain 550856 chr13 115169878 + 68254379 68260420 L1PA2 6032 - 0 6029 1339 363 0 1 898 0 1 4056 14 0 457 1 0 183 0 1 69 chain 24206 chr13 115169878 + 68262073 68262361 AluY 311 + 8 298 109177 124 0 1 127 0 1 37 chain 4504 chr13 115169878 + 68264957 68265040 L1PB1 5432 - 5 83 200730 4 1 0 5 1 0 14 6 5 7 1 0 22 1 0 21 chain 120534 chr13 115169878 + 68265817 68267388 THE1A-int 1579 - 5 1579 30865 4 0 1 40 5 6 4 1 0 96 1 0 115 1 2 79 1 2 394 1 2 180 2 1 111 1 2 535 chain 28959 chr13 115169878 + 68267388 68267742 THE1A 353 - 0 353 89182 243 1 0 110 chain 11242 chr13 115169878 + 68276644 68276953 L1PB1 5432 + 5143 5423 155252 13 14 6 5 0 2 51 37 36 24 1 0 16 2 0 6 19 9 13 2 0 8 1 0 14 2 0 24 1 0 15 7 6 13 1 0 14 1 0 5 chain 11773 chr13 115169878 + 68297449 68297624 L1MA2 4263 - 151 316 153164 6 1 0 48 7 0 92 1 0 9 2 1 9 chain 3416 chr13 115169878 + 68346678 68346714 LTR12C 1709 - 877 913 215209 36 chain 11872 chr13 115169878 + 68346714 68346915 LTR12C 1709 - 506 1032 152733 47 23 271 48 1 0 24 1 79 57 chain 29183 chr13 115169878 + 68373207 68373518 AluYb8 318 + 0 309 88130 132 2 0 177 chain 33092 chr13 115169878 + 68386047 68386451 THE1B-int 1605 - 5 409 79065 404 chain 84809 chr13 115169878 + 68399672 68400668 L1PA5 6144 + 5128 6144 41590 48 2 0 83 1 13 327 0 12 378 1 0 43 1 0 112 chain 29463 chr13 115169878 + 68409655 68410088 L1PREC2 3366 + 2442 2864 86787 271 4 0 29 1 0 10 2 0 28 3 4 22 4 3 37 11 7 11 chain 273129 chr13 115169878 + 68419726 68422771 L1PA4 6152 + 3103 6152 15010 80 1 0 1925 0 1 189 0 3 67 0 1 27 0 1 737 1 0 18 chain 30064 chr13 115169878 + 68466940 68467406 L1PA8 5853 + 5394 5853 84613 20 0 1 106 1 0 7 9 10 25 1 0 43 23 21 39 6 5 11 1 0 10 1 0 51 1 0 17 1 0 93 chain 288163 chr13 115169878 + 68472155 68475729 L1PA7 6471 + 2878 6469 14153 218 0 4 112 13 9 275 0 1 6 31 35 6 0 4 25 8 0 1 0 1 284 0 4 129 0 1 88 0 1 124 1 0 465 0 4 274 1 0 25 0 1 313 4 5 48 1 0 279 1 4 62 13 14 274 0 2 493 chain 15004 chr13 115169878 + 68494845 68495030 MER6A 605 + 350 534 141310 85 1 0 99 chain 170471 chr13 115169878 + 68495568 68497512 L1PA5 6144 - 0 1954 21994 11 1 5 833 0 4 264 2 0 682 0 4 151 chain 3844 chr13 115169878 + 68526188 68526237 L1PB1 5432 - 40 88 209726 22 1 0 26 chain 16916 chr13 115169878 + 68532627 68532990 THE1B 368 + 0 368 135807 101 133 139 66 7 6 56 chain 226107 chr13 115169878 + 68566721 68569217 L1PA3long 6157 - 0 2495 17525 138 1 0 2357 chain 57074 chr13 115169878 + 68569217 68569840 L1P1 4361 + 2445 3068 54424 623 chain 50612 chr13 115169878 + 68587926 68588705 L1PA11 4918 + 3820 4578 58571 334 0 4 173 13 10 51 0 3 12 6 0 68 2 0 11 7 6 12 66 52 11 2 0 11 chain 3544 chr13 115169878 + 68627603 68627642 Tigger4a 237 - 188 227 214662 39 chain 25106 chr13 115169878 + 68630133 68630478 THE1C 375 + 0 340 104252 180 23 18 142 chain 3093 chr13 115169878 + 68635493 68635526 L1PA4 6152 - 475 508 223047 33 chain 27632 chr13 115169878 + 68635526 68635856 L1PA4 6152 + 5817 6152 94256 317 0 3 7 0 2 6 chain 5752 chr13 115169878 + 68636878 68636961 MER85 139 - 0 92 187619 29 2 1 9 0 10 43 chain 28102 chr13 115169878 + 68677147 68677524 THE1C 375 - 0 375 92642 26 1 0 154 10 9 186 chain 17006 chr13 115169878 + 68681384 68681639 LTR12C 1709 - 677 972 135577 13 25 66 116 1 0 100 chain 2094 chr13 115169878 + 68681397 68681422 LTR12C 1709 - 1009 1034 193131 25 chain 7644 chr13 115169878 + 68681639 68681763 LTR12C 1709 - 653 777 158878 38 26 26 60 chain 85899 chr13 115169878 + 68744928 68746195 LTR12C 1709 + 0 1709 41193 228 60 78 30 20 63 63 11 13 91 11 8 70 6 284 184 1 0 96 27 20 60 0 10 25 5 7 110 0 101 86 1 0 82 chain 22758 chr13 115169878 + 68797989 68798291 THE1B 368 - 2 301 116793 156 12 10 31 1 0 102 chain 5306 chr13 115169878 + 68808747 68808810 MER82 654 + 581 644 191952 63 chain 23815 chr13 115169878 + 68813538 68813848 AluSp 311 + 0 303 111394 49 14 8 71 1 0 175 chain 257275 chr13 115169878 + 68831895 68835521 MER61-int 3695 + 0 3684 15864 30 4 0 16 1 0 152 39 0 74 1 0 92 13 69 33 16 0 73 0 4 140 3 6 157 12 17 109 5 67 187 11 15 56 25 0 230 0 4 136 2 0 279 0 1 5 0 1 259 9 10 19 0 1 181 4 5 337 2 1 78 6 4 13 1 0 38 5 4 114 8 9 125 4 3 10 0 2 5 12 10 169 1 2 22 1 7 241 0 1 61 chain 47699 chr13 115169878 + 68855277 68855974 LTR12_ 688 - 0 688 60694 131 0 10 34 1 0 205 1 5 17 47 45 102 0 1 15 25 0 61 3 7 55 chain 26378 chr13 115169878 + 68879072 68879383 AluSp 311 - 1 311 98500 178 1 0 132 chain 128777 chr13 115169878 + 68901472 68902960 L1PA5 6144 - 0 1502 28368 11 2 3 84 11 19 732 0 4 180 0 1 468 chain 21020 chr13 115169878 + 68907994 68908260 AluY 311 + 28 291 123844 94 9 6 163 chain 40805 chr13 115169878 + 68911580 68912062 L1P1 4361 - 20 500 68164 12 2 1 22 2 1 155 1 0 280 0 1 8 chain 23759 chr13 115169878 + 68912062 68912330 L1PA4 6152 + 5880 6148 111713 268 chain 225437 chr13 115169878 + 68912891 68915387 L1PA3long 6157 + 3654 6153 17560 642 1 0 61 0 4 682 0 1 352 1 0 757 chain 24190 chr13 115169878 + 68962140 68962446 AluYk4 311 + 0 296 109277 115 2 0 10 0 1 4 11 6 147 4 0 13 chain 85730 chr13 115169878 + 68989696 68990638 L1PA3long 6157 - 0 942 41255 942 chain 60627 chr13 115169878 + 69005507 69006386 L1PA8 5853 + 4929 5815 52509 77 1 0 3 4 0 82 16 18 63 5 6 208 0 1 31 0 14 132 1 0 44 2 0 48 37 36 48 2 1 19 1 0 55 chain 3504 chr13 115169878 + 69038139 69038179 L1P4 1494 + 1234 1274 215289 40 chain 9723 chr13 115169878 + 69055491 69055616 MER85 139 + 4 139 161971 86 1 11 38 chain 353003 chr13 115169878 + 69097343 69103422 L1PA7 6471 + 2004 6468 11525 44 15 15 72 0 1 24 1 4 4 0 1 176 3 0 6 0 3 165 0 2 23 1373 32 55 5 1 68 0 1 200 0 2 197 0 4 45 293 0 40 1 4 410 1 2 7 1 0 217 4 0 162 0 2 717 1 2 443 1 2 282 0 1 174 0 4 239 1 2 609 chain 11107 chr13 115169878 + 69098544 69098681 LTR12C 1709 + 931 1068 155784 137 chain 3882 chr13 115169878 + 69098690 69098775 LTR12C 1709 + 795 871 209146 42 31 22 12 chain 6387 chr13 115169878 + 69118360 69118455 L1MA8 2339 + 2169 2256 182124 29 6 0 34 2 0 24 chain 21558 chr13 115169878 + 69154891 69155136 AluY 311 + 57 302 121931 66 1 0 9 0 1 169 chain 47076 chr13 115169878 + 69156840 69157424 LTR19B 566 - 0 566 61145 113 0 1 279 2 0 5 18 0 6 0 1 161 chain 65048 chr13 115169878 + 69165126 69165962 L1PA8 5853 - 0 827 50550 93 1 0 17 1 0 42 14 13 9 1 0 71 2 0 44 1 0 60 3 1 477 chain 494815 chr13 115169878 + 69190667 69197390 L1PA7 6471 + 5 6459 7127 49 1 0 204 11 219 134 1 0 30 1 0 36 31 32 56 9 5 253 24 0 93 0 1 107 0 1 128 4 0 208 1 0 211 0 4 46 0 15 235 2 1 96 309 0 180 1 0 149 2 0 142 0 1 115 0 5 16 123 0 14 12 3 117 0 3 182 0 4 640 5 1 265 10 0 7 11 0 965 8 1 36 18 0 145 0 1 42 1 0 24 0 1 46 0 5 26 0 5 311 0 3 181 0 3 621 7 9 21 chain 4952 chr13 115169878 + 69227573 69227631 L1MA6 2487 + 2149 2207 195678 58 chain 78906 chr13 115169878 + 69242129 69243227 MER4-int 2692 + 229 1350 44106 121 0 3 250 0 1 12 1 17 63 0 2 27 6 1 189 10 11 46 0 10 8 10 0 153 0 1 35 14 17 115 0 1 4 1 0 17 0 1 16 chain 2856 chr13 115169878 + 69247532 69247562 U2 167 + 0 30 227722 30 chain 27878 chr13 115169878 + 69251302 69251666 THE1C 375 + 0 375 93426 15 0 11 48 0 1 115 1 0 185 chain 21837 chr13 115169878 + 69273376 69273617 L1PA4 6152 - 12 253 120865 241 chain 29042 chr13 115169878 + 69277504 69277811 AluYb8 318 - 11 318 88796 307 chain 19402 chr13 115169878 + 69282542 69282942 MER61D 487 + 0 468 128942 47 22 21 73 19 79 12 1 2 41 3 0 12 20 11 34 2 0 37 32 54 45 chain 5293 chr13 115169878 + 69298903 69298993 MLT2B4 540 + 77 167 192089 49 4 0 8 5 9 24 chain 29080 chr13 115169878 + 69326962 69327372 L1PA7 6471 + 5255 5621 88640 177 0 1 63 49 0 103 0 4 18 chain 19975 chr13 115169878 + 69327373 69327610 L1PA7 6471 + 5621 5858 127223 237 chain 49112 chr13 115169878 + 69327610 69328220 L1PA7 6471 + 5864 6470 59661 597 4 0 9 chain 24167 chr13 115169878 + 69346820 69347109 L1PA5 6144 + 5852 6142 109391 207 0 1 82 chain 510512 chr13 115169878 + 69364100 69370469 L1PA7 6471 - 4 6471 6120 6 5 0 140 6 0 7 0 7 252 3 1 24 17 0 65 0 10 121 0 1 156 4 5 42 0 7 643 1 0 31 1 0 670 0 7 89 0 1 345 0 1 23 0 4 74 1 0 87 0 109 46 4 2 385 0 2 458 37 5 340 5 6 227 1 7 243 1 0 65 1 0 190 0 1 296 0 8 535 0 1 191 0 10 117 0 1 231 20 8 132 3 4 28 chain 8867 chr13 115169878 + 69381994 69382093 L1PA5 6144 - 4 103 166298 99 chain 18618 chr13 115169878 + 69387124 69387636 LTR18B 584 + 7 529 131163 25 0 1 10 129 86 38 33 75 14 27 28 113 30 44 6 2 0 21 1 0 37 2 0 24 chain 2269 chr13 115169878 + 69390941 69391048 MER1A 529 + 164 274 235771 6 0 5 16 1 0 4 51 52 16 2 0 11 chain 48569 chr13 115169878 + 69400182 69400919 L1PA13 3608 + 2764 3488 60058 31 11 12 325 1 0 22 11 10 109 2 0 61 2 1 41 13 10 10 2 0 22 0 1 24 2 0 5 2 0 12 7 6 22 chain 28843 chr13 115169878 + 69401625 69402029 L1PA8A 6298 - 8 383 89701 52 0 1 200 37 8 104 1 0 10 chain 26064 chr13 115169878 + 69440178 69440498 L1PA7 6471 + 5999 6320 99776 59 1 2 260 chain 12869 chr13 115169878 + 69440498 69440646 L1PA7 6471 + 6321 6469 148757 148 chain 41916 chr13 115169878 + 69462782 69463373 LTR10F 562 - 5 562 66739 228 2 0 31 1 0 16 2 1 8 5 0 8 26 0 4 2 0 30 0 3 228 chain 201662 chr13 115169878 + 69463674 69466446 HERVIP10FH-int 2884 - 60 2732 19093 35 9 3 15 1 0 16 1 0 50 1 0 66 1 0 4 0 1 290 5 0 70 1 0 20 6 5 106 3 1 94 1 0 223 1 0 42 5 4 15 1 0 3 10 0 38 24 11 43 20 3 14 7 1 12 43 26 18 4 0 127 8 1 44 0 1 16 1 0 9 1 0 9 3 0 8 4 1 151 0 2 131 10 11 457 1 0 107 5 10 112 5 0 32 0 4 149 3 0 61 chain 37722 chr13 115169878 + 69472443 69472962 LTR10A 586 + 23 574 72525 36 0 8 7 0 1 28 0 21 20 4 3 55 8 9 70 1 2 262 6 7 22 chain 33040 chr13 115169878 + 69486994 69487363 L1PA3long 6157 + 5787 6156 79156 369 chain 68411 chr13 115169878 + 69496985 69498075 MER11B 1079 - 0 1079 49084 29 6 5 165 0 1 53 8 9 20 102 100 102 0 1 45 0 1 4 59 48 22 18 17 457 chain 4389 chr13 115169878 + 69537289 69537338 MLT2A1 477 - 2 51 202096 49 chain 20691 chr13 115169878 + 69554658 69555095 L1PA15 4387 + 3932 4357 125000 91 2 4 64 11 14 25 1 0 54 2 1 20 73 65 41 34 27 19 chain 3450 chr13 115169878 + 69571821 69571884 MADE1 96 - 16 96 216207 21 1 17 16 1 2 24 chain 73322 chr13 115169878 + 69592045 69593076 MER11A 1151 - 0 1151 46873 153 16 17 60 0 1 36 18 0 22 8 41 126 13 14 142 0 1 77 0 1 14 5 6 146 4 0 60 0 4 61 0 99 70 chain 68134 chr13 115169878 + 69604995 69605790 L1P1 4361 - 20 813 49188 12 2 1 178 1 0 602 chain 82964 chr13 115169878 + 69605790 69606767 L1PA4 6152 + 5170 6143 42351 102 5 1 77 1 0 4 0 1 421 0 1 232 0 1 71 8 6 56 chain 48707 chr13 115169878 + 69715644 69716301 L1PA8 5853 - 0 672 59948 93 1 0 13 10 9 45 16 17 66 2 0 48 1 0 40 0 1 37 0 14 74 0 6 65 8 5 81 1 2 56 chain 8237 chr13 115169878 + 69719775 69719909 L1PB1 5432 + 5308 5430 169743 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 18 4 0 8 chain 8936 chr13 115169878 + 69734069 69734239 L1MA3 4352 + 4137 4308 165938 10 0 3 42 8 10 34 9 5 19 0 3 8 1 0 11 1 0 6 1 0 20 chain 13058 chr13 115169878 + 69737314 69737512 L1MA2 4263 - 165 526 148000 40 7 0 92 1 0 9 2 1 34 0 172 13 chain 10538 chr13 115169878 + 69770819 69771017 LTR7B 505 + 0 495 158102 69 1 40 30 53 311 45 chain 41265 chr13 115169878 + 69771198 69771649 LTR7 482 - 0 482 67577 187 0 31 264 chain 27552 chr13 115169878 + 69780499 69780886 L1PA8 5853 + 5470 5853 94496 94 1 0 42 7 5 59 0 1 67 4 3 19 1 0 93 chain 59913 chr13 115169878 + 69795757 69796500 LTR17 781 + 0 731 52867 8 0 6 105 0 9 170 10 0 28 0 1 93 18 0 311 chain 119357 chr13 115169878 + 69798092 69799468 HERV17-int 4347 + 12 1383 31279 15 1 0 51 1 0 37 2 0 24 1 0 1244 chain 26703 chr13 115169878 + 69800889 69801226 MLT2A2 560 + 0 343 97314 33 0 6 304 chain 42154 chr13 115169878 + 69863311 69863849 MER41A 554 + 14 554 66449 413 0 1 9 4 0 32 2 7 78 chain 11937 chr13 115169878 + 69901541 69901708 L1PA8 5853 - 0 165 152453 93 1 0 15 6 5 52 chain 11048 chr13 115169878 + 69902387 69902533 L1P3 4156 - 17 160 156021 24 2 1 7 2 0 111 chain 2898 chr13 115169878 + 69902991 69903023 HSMAR1 1287 + 1 33 227068 32 chain 75529 chr13 115169878 + 69921423 69922460 L1PA8A 6298 + 5287 6291 45757 202 0 6 14 7 13 46 1 3 398 65 11 135 0 1 50 7 13 112 chain 111607 chr13 115169878 + 69932327 69933584 L1PA5 6144 + 4881 6140 33775 930 0 1 73 0 1 254 chain 17391 chr13 115169878 + 69934652 69934981 THE1C 375 + 0 330 134532 87 7 8 11 8 9 64 0 3 16 56 53 7 1 0 72 chain 47577 chr13 115169878 + 69950413 69950966 L1PA7 6471 + 5910 6463 60783 553 chain 27140 chr13 115169878 + 69966672 69966961 AluYa5 310 - 0 288 95793 184 1 0 104 chain 165354 chr13 115169878 + 69970000 69972414 L1PA7 6471 - 1 2316 22609 162 6 5 100 2 0 5 0 4 99 312 0 346 0 4 45 0 2 84 1 0 38 0 1 468 17 0 121 14 1 360 1 0 23 0 2 19 0 1 6 1 0 135 0 235 49 chain 127586 chr13 115169878 + 69972414 69974022 L1PA7 6471 + 2526 4138 28654 104 11 6 198 0 1 28 1 0 4 0 1 246 0 1 47 4 3 402 1 2 192 0 3 17 0 3 258 6 7 89 chain 163360 chr13 115169878 + 70008941 70010839 L1PA5 6144 + 4238 6142 22898 237 0 2 255 0 3 556 0 4 701 0 1 138 4 0 7 chain 43845 chr13 115169878 + 70036138 70036991 LTR6B 557 - 0 557 64390 55 0 2 6 0 1 133 0 1 61 326 0 232 3 29 37 chain 137144 chr13 115169878 + 70040452 70042215 L1PA8 5853 - 0 1760 26610 93 1 0 19 2 1 50 1 0 8 1 0 73 2 0 42 4 3 42 0 1 412 0 1 22 1 0 27 0 1 48 2 0 50 20 24 253 1 0 312 0 1 38 2 0 141 0 2 96 chain 22033 chr13 115169878 + 70049498 70049793 AluY 311 + 0 303 120093 123 1 0 10 6 0 41 1 2 66 9 23 38 chain 527374 chr13 115169878 + 70051998 70058122 L1PA5 6144 - 1 6144 4460 34 0 1 111 2 4 107 1 0 236 0 1 355 1 0 542 0 7 397 0 4 93 1 0 1093 1 0 452 0 1 639 0 1 895 9 0 18 0 1 1002 0 14 135 chain 438285 chr13 115169878 + 70073695 70079584 HERVL-int 5654 - 0 5654 9098 67 0 2 8 310 0 102 5 0 44 0 1 211 0 1 847 0 4 83 0 4 332 8 12 223 0 2 4 1 0 111 21 23 446 3 4 236 9 2 70 0 1 178 1 0 4 1 2 408 4 5 45 7 6 170 10 9 4 0 1 444 27 0 21 0 81 79 22 26 62 0 7 539 0 1 15 3 4 694 1 0 9 chain 26107 chr13 115169878 + 70079711 70080086 MLT2A1 477 - 92 477 99591 40 8 10 117 16 17 27 1 5 26 3 4 89 0 2 48 chain 7194 chr13 115169878 + 70086199 70086315 MER4A 717 - 589 717 176115 44 14 24 10 0 2 48 chain 30857 chr13 115169878 + 70118189 70118889 L1PB1 5432 + 4770 5423 82757 33 5 12 18 5 6 52 3 9 146 101 68 23 5 7 12 7 3 9 2 0 52 2 1 16 2 1 43 1 0 9 30 18 18 3 1 5 1 0 14 2 0 19 1 0 5 1 0 21 1 0 27 1 0 5 chain 18882 chr13 115169878 + 70123738 70124112 MSTA 426 - 0 422 130420 91 11 37 35 48 53 10 1 0 63 39 49 43 0 8 33 chain 63654 chr13 115169878 + 70127127 70127923 L1PA8A 6298 + 5495 6291 51167 683 1 0 10 1 2 101 chain 21670 chr13 115169878 + 70140833 70141108 AluSq4 311 + 0 299 121499 82 1 24 22 1 2 169 chain 18430 chr13 115169878 + 70179100 70179349 LTR8 732 + 16 273 131688 14 0 9 113 7 6 115 chain 81598 chr13 115169878 + 70189009 70189974 LTR5_Hs 974 - 0 974 42926 82 0 2 16 2 0 40 8 15 803 0 2 14 chain 160186 chr13 115169878 + 70229234 70231055 L1PA5 6144 - 15 1842 23312 1780 0 6 41 chain 72790 chr13 115169878 + 70233995 70235015 MER11A 1151 + 0 1151 47129 57 0 98 134 14 11 43 5 0 45 0 1 50 6 7 33 0 12 23 0 1 17 1 8 20 1 0 108 23 22 107 14 39 26 3 0 223 1 0 66 chain 38880 chr13 115169878 + 70235015 70235538 MER4E 760 + 213 753 70898 68 2 6 84 3 2 6 0 4 99 3 14 157 2 1 99 chain 489403 chr13 115169878 + 70240963 70247091 L1PA6 6164 + 0 6156 7389 137 0 76 22 1 3 280 9 11 38 1 0 177 0 3 40 0 17 123 1 5 245 19 22 55 2 1 358 1 2 81 11 1 336 0 1 168 10 12 110 2 1 485 4 9 286 2 0 65 0 2 18 0 2 115 4 7 630 3 4 1180 109 6 158 0 4 16 0 4 75 0 12 612 1 0 102 5 6 24 0 2 7 chain 89111 chr13 115169878 + 70252723 70253754 L1PA5 6144 - 0 1033 39962 510 2 0 355 0 4 164 chain 51803 chr13 115169878 + 70253754 70254327 L1PA5 6144 + 4540 5113 57633 573 chain 12373 chr13 115169878 + 70271655 70271813 L1PB 1623 - 733 890 150740 103 1 0 54 chain 28946 chr13 115169878 + 70272206 70272522 AluYb8 318 + 0 314 89240 132 2 0 182 chain 20623 chr13 115169878 + 70272537 70272798 L1PB1 5432 + 4792 5055 125212 222 0 2 39 chain 7045 chr13 115169878 + 70277287 70277430 Tigger3b 1229 + 34 178 177157 57 43 44 43 chain 55561 chr13 115169878 + 70310136 70311013 L1PB1 5432 + 4434 5277 55378 192 3 0 136 6 4 32 18 18 166 0 1 113 40 18 24 1 0 6 1 0 12 28 22 42 16 16 41 chain 533633 chr13 115169878 + 70356311 70362798 L1PA4 6152 + 4 6146 3749 455 10 11 110 1 0 263 18 1 29 0 2 193 1 2 168 1 0 270 4 0 232 4 0 933 320 0 318 4 0 83 0 2 126 1 2 573 0 1 580 0 2 106 5 1 815 0 4 171 4 0 689 chain 38907 chr13 115169878 + 70376009 70376514 L1PA8 5853 - 0 513 70856 24 4 5 64 1 0 16 1 0 21 0 15 14 1 0 6 1 0 9 1 0 71 2 0 46 1 0 222 chain 37283 chr13 115169878 + 70376555 70377018 LTR2 463 + 0 463 73107 255 1 0 107 12 13 88 chain 48520 chr13 115169878 + 70385886 70386426 L1PA5 6144 - 2853 3393 60025 540 chain 102911 chr13 115169878 + 70386426 70387584 L1PA5 6144 + 4953 6112 36023 240 0 1 77 0 4 175 4 0 662 chain 11957 chr13 115169878 + 70408017 70408362 L1PB1 5432 + 5114 5423 152374 15 6 5 8 1 0 14 2 0 3 2 0 9 21 19 27 8 7 10 6 5 44 1 0 16 4 10 9 22 0 11 11 8 12 2 0 24 1 0 23 1 0 6 1 0 20 1 0 4 chain 9992 chr13 115169878 + 70417943 70418055 L1PA5 6144 - 5 117 160616 112 chain 29560 chr13 115169878 + 70427277 70427653 THE1C 375 + 0 375 86377 349 1 0 26 chain 23171 chr13 115169878 + 70435800 70436126 AluSp 311 + 1 311 114807 44 10 12 63 18 0 191 chain 5627 chr13 115169878 + 70436727 70437054 MLT1B 390 + 9 352 188802 35 221 236 15 10 11 46 chain 18232 chr13 115169878 + 70441923 70442128 L1PA4 6152 + 5930 6135 132252 205 chain 10926 chr13 115169878 + 70447773 70447891 L1PA7 6471 + 6339 6457 156502 118 chain 38333 chr13 115169878 + 70452886 70453342 L1PA5 6144 + 5637 6139 71679 347 7 53 102 chain 29469 chr13 115169878 + 70459055 70459371 AluYb8 318 - 2 318 86761 316 chain 27839 chr13 115169878 + 70467358 70467654 AluYb8 318 - 11 307 93567 296 chain 32553 chr13 115169878 + 70476658 70477039 L1PA4 6152 + 5761 6143 79940 136 0 1 245 chain 150688 chr13 115169878 + 70489202 70490883 L1PA4 6152 + 4467 6152 24517 883 0 4 798 chain 4812 chr13 115169878 + 70542963 70543019 L1PA4 6152 + 6096 6152 197206 56 chain 3432 chr13 115169878 + 70571633 70571732 L1MB1 2102 - 45 139 216535 17 48 43 34 chain 148141 chr13 115169878 + 70603553 70605254 L1P2 5180 + 1810 3522 24860 397 0 4 178 0 6 308 0 1 818 chain 29659 chr13 115169878 + 70631626 70631937 AluYb8 318 + 0 311 86031 311 chain 52077 chr13 115169878 + 70647101 70647700 L1PA5 6144 + 5542 6144 57578 29 0 1 143 0 2 427 chain 24475 chr13 115169878 + 70675568 70675850 AluSq10 312 - 20 302 107680 282 chain 32074 chr13 115169878 + 70694841 70695205 L1PA4 6152 + 5779 6143 80730 364 chain 13818 chr13 115169878 + 70706315 70706602 L1PA16 3655 + 3305 3592 145188 35 24 23 53 29 19 69 2 12 23 10 14 24 3 0 15 chain 73534 chr13 115169878 + 70719108 70719926 L1PA3long 6157 - 1125 1943 46567 818 chain 101003 chr13 115169878 + 70719926 70721056 L1PA3long 6157 + 5028 6157 36512 279 2 1 849 chain 131487 chr13 115169878 + 70740302 70741805 L1PA4 6152 + 4644 6152 27754 187 0 1 258 4 0 208 0 4 436 0 5 28 0 1 374 2 0 6 chain 17070 chr13 115169878 + 70759654 70759853 L1PA4 6152 - 212 411 135402 199 chain 16916 chr13 115169878 + 70759861 70760051 L1PA4 6152 + 5961 6151 135806 190 chain 298878 chr13 115169878 + 70767913 70771663 L1PA7 6471 - 17 4032 13484 139 2 0 6 1 2 9 3 1 599 10 12 22 3 1 46 0 3 665 6 1 133 0 1 400 3 5 15 5 1 12 0 1 187 0 2 362 13 9 196 0 267 257 4 8 218 0 1 241 2 1 32 4 3 74 0 2 81 chain 519649 chr13 115169878 + 70783110 70789023 L1PA4 6152 + 263 6152 5194 108 0 2 87 6 0 120 1 0 453 0 1 1432 16 1 34 5 0 663 1 0 6 0 1 368 1 0 326 0 1 485 0 4 1791 4 0 6 chain 29958 chr13 115169878 + 70861682 70861997 AluYb8 318 + 0 315 84946 315 chain 23347 chr13 115169878 + 70863590 70863869 L1P3 4156 - 24 300 113937 16 1 0 9 2 0 251 chain 61307 chr13 115169878 + 70863869 70864609 L1PA7 6471 + 5716 6461 52203 20 0 1 360 0 3 119 0 1 241 chain 3528 chr13 115169878 + 70872969 70873019 MADE1 96 + 45 96 214904 25 1 2 24 chain 12883 chr13 115169878 + 70905923 70906225 MLT2A2 560 + 0 278 148693 16 0 1 29 13 0 75 90 90 43 12 0 24 chain 25569 chr13 115169878 + 70909163 70909450 L1PA4 6152 + 5865 6152 101878 287 chain 9561 chr13 115169878 + 70915104 70915218 L1PA5 6144 - 6 120 162771 114 chain 7122 chr13 115169878 + 70921099 70921211 L1MA4 2864 + 2535 2645 176600 69 7 6 24 1 0 11 chain 23191 chr13 115169878 + 70948396 70948690 AluSp 311 - 9 302 114718 161 1 0 7 1 0 53 1 2 70 chain 14568 chr13 115169878 + 70954832 70955016 MLT2A1 477 - 286 475 142683 19 0 4 27 1 2 137 chain 6067 chr13 115169878 + 70964003 70964069 L1PA8 5853 + 5780 5846 184677 66 chain 49040 chr13 115169878 + 70971750 70972328 L1PA5 6144 - 3 582 59718 250 0 1 328 chain 33834 chr13 115169878 + 70972328 70972730 L1PA5 6144 + 5168 5574 77882 115 4 7 4 0 1 279 chain 22834 chr13 115169878 + 70981159 70981534 MLT2A1 477 + 0 385 116428 46 0 2 60 41 45 16 1 5 13 25 25 173 chain 19730 chr13 115169878 + 70988483 70988731 L1PA5 6144 + 5894 6143 128011 78 1 2 169 chain 3230 chr13 115169878 + 71007562 71007600 L1MDa 1598 + 667 705 220417 38 chain 24284 chr13 115169878 + 71015969 71016262 L1PA8 5853 - 419 713 108746 166 0 1 127 chain 26657 chr13 115169878 + 71016262 71016674 L1PA8 5853 + 5445 5853 97464 73 0 4 36 12 11 41 9 7 58 15 13 52 2 1 19 5 4 83 1 0 6 chain 23540 chr13 115169878 + 71029416 71029691 AluSp 311 + 11 286 112901 275 chain 6575 chr13 115169878 + 71033597 71033677 U6 107 + 2 82 180654 80 chain 315150 chr13 115169878 + 71033678 71037697 L1PA7 6471 + 2451 6470 12800 190 5 4 23 1 0 4 0 1 34 0 1 5 1 0 298 1 4 531 5 9 51 0 1 15 0 1 207 1 0 155 2 1 106 2 0 5 0 2 15 2 1 78 0 1 194 5 6 177 1 2 5 0 1 370 5 0 36 10 7 222 0 1 78 1 0 4 0 2 322 8 7 444 0 1 247 0 1 51 2 1 92 3 0 5 chain 20891 chr13 115169878 + 71044000 71044239 L1PA4 6152 + 5901 6140 124314 239 chain 152009 chr13 115169878 + 71072015 71073753 L1PA5 6144 + 4395 6144 24333 1335 1 12 402 chain 28167 chr13 115169878 + 71083524 71083819 AluYa5 310 - 15 310 92411 295 chain 122896 chr13 115169878 + 71085139 71086602 LTR12C 1709 - 0 1709 30082 331 0 29 121 0 4 91 0 47 220 0 160 233 0 5 161 7 8 299 chain 4048 chr13 115169878 + 71116060 71116114 L1MC3 1789 - 470 521 206661 8 3 0 43 chain 31592 chr13 115169878 + 71121239 71121788 L1PB 1623 + 1053 1576 81509 253 0 8 131 142 108 23 chain 38395 chr13 115169878 + 71139060 71139531 MER9a1 513 + 0 470 71582 170 0 1 190 1 3 5 2 0 87 2 0 14 chain 5432 chr13 115169878 + 71161345 71161591 MLT1A1 405 + 65 395 190691 15 114 109 17 4 85 44 1 0 8 19 29 19 1 0 4 chain 12315 chr13 115169878 + 71192382 71192537 L1PA16 3655 + 2913 3070 150960 4 1 0 93 0 3 57 chain 16620 chr13 115169878 + 71220843 71221058 L1PA5 6144 - 1 216 136610 112 1 0 47 11 12 44 chain 74353 chr13 115169878 + 71260551 71261573 L1P3 4156 - 212 1220 46331 114 2 0 296 0 1 6 1 0 23 38 22 91 0 1 57 1 0 236 0 4 157 chain 23206 chr13 115169878 + 71293045 71293402 THE1A 353 + 0 353 114661 15 2 0 32 0 1 35 46 45 70 2 0 155 chain 8442 chr13 115169878 + 71385850 71386061 HSMAR2 1300 - 1073 1283 168611 50 70 69 31 1 2 9 2 3 18 2 0 28 chain 17733 chr13 115169878 + 71393215 71393458 AluY 311 + 38 301 133610 84 13 34 109 0 4 18 5 0 14 chain 19085 chr13 115169878 + 71412456 71412822 THE1B 368 + 0 368 129865 15 2 0 32 4 5 10 71 73 39 17 18 176 chain 28956 chr13 115169878 + 71461221 71461529 AluYb8 318 + 0 308 89190 308 chain 18804 chr13 115169878 + 71485174 71485412 L1PA5 6144 + 5904 6144 130665 91 8 9 127 1 2 11 chain 32797 chr13 115169878 + 71500741 71501163 L1PA7 6471 + 6045 6469 79536 59 5 6 26 0 1 98 0 2 43 0 1 178 3 0 10 chain 23431 chr13 115169878 + 71509424 71509730 L1PA16 3655 - 93 397 113474 63 0 1 33 1 0 175 3 1 31 chain 7946 chr13 115169878 + 71520702 71520789 L1PA2 6032 + 5944 6031 171348 87 chain 3011 chr13 115169878 + 71553791 71553823 UCON16 145 - 17 49 224815 32 chain 4212 chr13 115169878 + 71556285 71556455 MLT1D 503 - 78 249 204400 21 18 18 13 39 41 29 29 28 21 chain 55694 chr13 115169878 + 71589454 71590206 MER4E 760 - 0 760 55310 226 5 6 238 0 4 107 25 28 12 16 16 69 1 0 30 0 1 23 chain 24847 chr13 115169878 + 71596698 71596995 AluY 311 + 0 302 105638 19 0 4 103 0 1 175 chain 3144 chr13 115169878 + 71616780 71616815 X6B_LINE 212 + 125 160 222088 35 chain 8585 chr13 115169878 + 71641286 71641404 L1PB2 3958 - 140 255 167816 69 2 0 8 1 0 38 chain 57790 chr13 115169878 + 71643352 71644443 L1PA11 4918 - 401 1215 54090 9 4 0 20 15 13 69 9 1 10 1 0 53 0 1 5 11 5 7 1 0 258 8 0 14 1 0 4 252 5 340 chain 20043 chr13 115169878 + 71643852 71644102 AluSp 311 - 5 255 126999 24 0 2 79 0 1 80 3 0 64 chain 11188 chr13 115169878 + 71672424 71672870 MLT2B2 565 - 0 553 155480 20 100 107 16 181 281 129 chain 17395 chr13 115169878 + 71678403 71678613 L1PA5 6144 - 0 208 134521 148 6 4 56 chain 4233 chr13 115169878 + 71679373 71679497 MLT2B4 540 - 9 140 204133 23 6 19 11 44 38 40 chain 170657 chr13 115169878 + 71701252 71703357 L1PA7 6471 - 12 2102 21934 327 0 1 128 0 1 300 17 16 71 0 1 116 20 1 400 1 2 140 3 0 138 0 4 174 1 0 37 0 1 232 chain 255991 chr13 115169878 + 71703357 71706514 L1PA7 6471 + 1214 4349 15937 135 10 9 26 2 3 446 0 2 800 1 3 57 2 0 205 16 0 232 1 0 220 7 3 141 2 1 48 12 16 435 10 4 349 chain 101468 chr13 115169878 + 71751447 71752574 L1PA3long 6157 + 5035 6157 36407 100 4 0 249 1 0 773 chain 248322 chr13 115169878 + 71758426 71761409 L1PA6 6164 + 0 6154 16345 20 0 1 215 0 2 281 0 2 46 1 0 625 4 3164 348 0 7 178 0 1 418 2 0 523 0 1 102 0 1 89 1 0 130 chain 3168 chr13 115169878 + 71788695 71788731 L2a 937 - 604 640 221590 36 chain 3782 chr13 115169878 + 71829872 71829916 Tigger3a 397 + 208 252 210647 44 chain 4896 chr13 115169878 + 71830545 71830603 MSTD 398 - 330 388 196301 58 chain 57204 chr13 115169878 + 71863778 71864508 LTR12 884 - 0 884 54401 484 0 22 39 0 23 7 2 111 198 chain 93042 chr13 115169878 + 71872644 71873896 MER11A 1151 - 0 1151 38645 255 0 1 33 3 0 56 7 6 204 9 15 279 1 0 6 0 2 60 0 4 31 2 0 21 107 0 178 chain 8287 chr13 115169878 + 71873619 71873718 MER11A 1151 - 973 1072 159153 99 chain 29973 chr13 115169878 + 71917536 71917940 MLT2A1 477 - 82 477 84897 205 10 4 16 5 2 168 chain 21966 chr13 115169878 + 71918813 71919160 THE1A 353 - 7 353 120370 104 0 1 4 5 4 99 29 30 10 5 4 42 0 1 32 2 0 15 chain 121745 chr13 115169878 + 71919169 71920796 THE1A-int 1579 - 9 1579 30461 43 62 2 404 0 4 457 20 23 295 9 5 337 chain 35998 chr13 115169878 + 71937758 71938261 MLT2A2 560 - 0 560 74897 147 3 14 173 46 92 134 chain 554401 chr13 115169878 + 71958697 71964836 L1PA3long 6157 - 0 6146 899 5 0 2 152 0 1 4529 0 1 275 0 3 1178 chain 6266 chr13 115169878 + 71995335 71995870 L1MA9 1812 - 355 865 183028 32 120 96 18 220 223 6 1 0 5 3 0 19 54 55 15 1 0 41 chain 49639 chr13 115169878 + 71997046 71997733 L1PA8 5853 + 5174 5853 59284 390 1 0 46 2 0 68 21 11 6 0 7 38 2 1 19 1 0 93 chain 21345 chr13 115169878 + 72008458 72008745 AluSg7 307 - 11 300 122708 144 3 0 6 11 15 13 0 1 110 chain 19424 chr13 115169878 + 72023574 72023821 L1PA8 5853 + 5608 5852 128885 70 2 1 61 2 1 19 1 0 92 chain 16324 chr13 115169878 + 72023999 72024189 L1PA4 6152 + 5938 6129 137421 70 0 1 120 chain 21908 chr13 115169878 + 72041399 72041640 L1PA3long 6157 + 5915 6157 120594 168 0 1 73 chain 39181 chr13 115169878 + 72080269 72080695 L1PA2 6032 - 2 428 70488 426 chain 4366 chr13 115169878 + 72125452 72125563 L1MA4 2864 - 55 147 202375 40 6 4 21 12 6 12 11 0 9 chain 23711 chr13 115169878 + 72191011 72191289 AluSq2 311 - 8 300 111974 166 0 14 112 chain 23702 chr13 115169878 + 72229491 72229791 AluSp 311 - 3 300 112020 11 2 0 177 1 0 109 chain 7302 chr13 115169878 + 72290971 72291090 L1PA8 5853 - 0 126 175427 22 1 10 60 2 1 18 3 2 13 chain 10317 chr13 115169878 + 72304226 72304338 L1PA3long 6157 + 6041 6153 159062 112 chain 3731 chr13 115169878 + 72384898 72384977 MER127 228 + 117 180 211455 9 1 0 5 1 2 30 16 0 17 chain 33763 chr13 115169878 + 72411784 72412159 L1PA2 6032 + 5505 5892 77993 57 2 0 40 0 14 276 chain 9701 chr13 115169878 + 72432730 72432915 L1MA8 2339 - 138 328 162082 19 7 17 38 2 0 5 6 5 17 9 7 82 chain 6199 chr13 115169878 + 72447571 72447684 MER131 149 - 18 129 183593 43 5 6 15 14 11 36 chain 8188 chr13 115169878 + 72459891 72460009 MER20 218 + 91 210 170024 64 8 9 46 chain 95953 chr13 115169878 + 72467524 72468611 L1PA4 6152 + 5061 6143 37834 564 6 0 272 0 1 245 chain 3603 chr13 115169878 + 72473831 72473880 MER44D 709 - 595 641 213604 7 3 0 39 chain 4909 chr13 115169878 + 72506601 72506663 MSTB2 466 + 43 106 196168 46 0 1 16 chain 28198 chr13 115169878 + 72506728 72507036 AluYb8 318 + 0 304 92318 126 4 0 178 chain 17239 chr13 115169878 + 72516719 72517098 MSTA 426 + 0 419 134959 96 40 64 44 72 68 14 15 35 98 chain 83427 chr13 115169878 + 72526799 72527720 L1PA3long 6157 + 5227 6149 42146 396 0 1 525 chain 10318 chr13 115169878 + 72541332 72541466 L1PA8 5853 + 5721 5853 159045 23 2 1 15 1 0 93 chain 16975 chr13 115169878 + 72549512 72549878 L1MA2 4263 - 150 504 135652 8 1 0 30 1 0 17 7 0 15 0 3 65 93 91 22 1 0 62 10 7 34 chain 11911 chr13 115169878 + 72556589 72556739 L1PA10 4194 - 82 234 152549 5 0 2 145 chain 16796 chr13 115169878 + 72562634 72562869 MER44A 345 + 105 338 136122 148 2 1 80 1 0 4 chain 22752 chr13 115169878 + 72566428 72566696 AluSx4 309 + 1 269 116818 268 chain 15840 chr13 115169878 + 72582421 72582611 L1PA5 6144 - 24 214 138822 190 chain 13155 chr13 115169878 + 72635519 72635828 L1M1 2793 + 2409 2678 147624 32 1 0 13 51 47 51 35 1 70 6 5 17 1 2 26 1 0 5 chain 494350 chr13 115169878 + 72636263 72642530 L1PA7 6471 + 5 6461 7149 351 0 1 5 1 0 49 4 1 103 0 1 82 34 35 88 19 142 200 0 14 264 0 1 4 1 0 164 3 21 58 4 5 460 6 9 175 1 0 52 0 1 58 2 0 166 21 23 71 0 1 25 6 0 1079 0 36 239 1 0 270 5 1 368 0 1 189 8 7 767 13 22 10 0 4 327 22 13 351 10 11 131 chain 22666 chr13 115169878 + 72653034 72653299 AluSp 311 + 20 285 117240 265 chain 275811 chr13 115169878 + 72657828 72660946 L1PA5 6144 + 3008 6144 14880 77 0 1 260 0 1 1046 0 15 766 1 0 532 0 2 436 chain 26157 chr13 115169878 + 72670296 72670599 L1PA7 6471 - 2 305 99379 303 chain 3853 chr13 115169878 + 72676571 72676746 MER53 195 + 0 178 209589 20 114 117 41 chain 12834 chr13 115169878 + 72681234 72681564 L1PB1 5432 - 45 342 148907 14 1 0 27 29 20 14 20 10 6 2 0 16 1 0 4 2 0 32 10 9 55 0 3 6 5 3 9 2 0 3 2 0 10 1 0 12 1 0 20 1 0 6 6 5 13 chain 82576 chr13 115169878 + 72690397 72691339 L1PA3long 6157 + 5211 6157 42509 77 1 0 412 0 5 44 10 4 381 0 6 17 chain 48708 chr13 115169878 + 72695696 72696350 PABL_A 660 + 0 660 59946 62 5 0 6 3 8 26 0 1 24 1 0 151 8 9 4 0 1 30 0 4 334 chain 5319 chr13 115169878 + 72716799 72716871 MER5A1 166 - 1 72 191829 37 1 0 34 chain 5752 chr13 115169878 + 72720897 72720972 Tigger4a 237 - 162 237 187626 75 chain 15950 chr13 115169878 + 72742404 72742628 LTR39 781 + 46 269 138518 136 17 16 71 chain 46957 chr13 115169878 + 72774654 72775177 L1PA4 6152 - 9 532 61249 523 chain 57626 chr13 115169878 + 72775181 72775812 L1PA4 6152 + 4987 5618 54173 631 chain 8185 chr13 115169878 + 72799726 72799826 L1PA5 6144 - 2 102 170044 100 chain 248283 chr13 115169878 + 72799908 72802698 L1PA5 6144 - 0 2788 16348 850 1 0 950 0 1 661 2 0 326 chain 6014 chr13 115169878 + 72817853 72817919 THE1C 375 - 41 107 185102 66 chain 3570 chr13 115169878 + 72837741 72837779 L1PA7 6471 + 6275 6313 214129 38 chain 13474 chr13 115169878 + 72837782 72837937 L1PA7 6471 + 6317 6470 146440 142 2 0 11 chain 548264 chr13 115169878 + 72839620 72845762 L1PA4 6152 - 1 6151 1668 834 9 13 2378 5 0 1474 0 9 1442 chain 23044 chr13 115169878 + 72861394 72861648 L1PA3long 6157 - 0 254 115430 254 chain 19085 chr13 115169878 + 72867759 72867980 L1PA7 6471 + 6091 6312 129864 221 chain 13121 chr13 115169878 + 72867985 72868136 L1PA7 6471 + 6316 6467 147766 151 chain 19919 chr13 115169878 + 72893711 72894076 THE1D 372 + 0 360 127405 12 0 3 17 1 0 24 10 1 17 11 12 86 39 41 12 18 17 118 chain 107873 chr13 115169878 + 72896781 72898099 L1PA6 6164 + 4816 6145 34763 32 4 0 73 0 1 200 9 11 4 1 0 159 0 4 18 0 6 180 0 3 638 chain 28844 chr13 115169878 + 72899561 72899862 AluYa5 310 - 9 310 89694 301 chain 34799 chr13 115169878 + 72915399 72915837 THE1B-int 1605 + 1149 1592 76480 59 0 1 215 3 8 5 1 0 155 chain 35816 chr13 115169878 + 72932215 72932669 L1P3 4156 - 17 463 75111 26 1 0 6 2 0 100 6 1 313 chain 72897 chr13 115169878 + 72933002 72933865 L1PA5 6144 + 5252 6141 47070 14 1 6 59 0 14 639 0 7 150 chain 7860 chr13 115169878 + 72967755 72967876 L1MA8 2339 + 1776 1890 171935 13 3 0 47 9 5 49 chain 22272 chr13 115169878 + 73022922 73023237 THE1D 372 + 58 372 119025 80 4 0 28 14 22 12 5 0 172 chain 72109 chr13 115169878 + 73100201 73101008 L1PA5 6144 + 5334 6144 47430 11 0 3 796 chain 4711 chr13 115169878 + 73104784 73104940 MLT2F 649 - 5 160 198385 29 20 18 12 50 52 28 1 0 16 chain 15618 chr13 115169878 + 73105578 73105958 L1PB1 5432 + 5090 5427 139527 11 1 6 7 13 0 20 1 0 13 2 0 11 5 1 9 6 4 48 2 1 16 1 0 42 68 52 15 2 0 24 1 0 21 1 0 13 1 0 13 1 0 5 2 0 5 chain 4148 chr13 115169878 + 73114408 73114533 MER20 218 - 0 117 205263 12 5 6 36 47 38 25 chain 23867 chr13 115169878 + 73120078 73120433 THE1C 375 - 12 375 111100 14 2 1 153 1 10 39 37 37 109 chain 25177 chr13 115169878 + 73122401 73122745 L1PB4 2604 + 2215 2552 103861 21 5 1 137 4 2 36 1 0 140 chain 6768 chr13 115169878 + 73126404 73126497 MLT1C 463 - 288 380 179186 7 1 0 85 chain 17486 chr13 115169878 + 73129251 73129621 THE1D 372 - 0 372 134299 7 1 0 47 5 0 25 9 12 35 67 80 82 14 0 8 14 20 56 chain 2781 chr13 115169878 + 73147636 73147755 MLT1A0 366 + 179 301 229005 10 0 1 13 72 74 24 chain 545153 chr13 115169878 + 73184390 73190417 L1PA3long 6157 + 4 6154 2055 414 6 0 349 9 137 142 0 1 2130 1 0 1267 0 1 1709 chain 4230 chr13 115169878 + 73213690 73213735 MADE1 96 - 51 96 204174 45 chain 124668 chr13 115169878 + 73249696 73251084 L1PA4 6152 + 4756 6151 29484 432 0 1 703 1 0 104 1 8 147 chain 14264 chr13 115169878 + 73266453 73266729 MSTA 426 + 18 300 143667 53 27 28 60 6 10 30 10 11 37 1 0 4 17 18 31 chain 150629 chr13 115169878 + 73278430 73280154 L1PA5 6144 - 21 1764 24523 115 8 7 375 1 3 328 0 5 108 0 1 239 0 1 403 0 6 7 0 5 140 chain 8263 chr13 115169878 + 73280154 73280250 U6 107 - 0 96 169604 96 chain 3229 chr13 115169878 + 73290352 73290391 MSTA 426 + 387 426 220430 39 chain 4250 chr13 115169878 + 73293817 73293879 MER5C 305 + 96 160 203872 34 1 3 27 chain 21002 chr13 115169878 + 73316823 73317356 L1MA7 2200 + 1722 2167 123904 54 6 5 17 51 3 148 63 49 53 12 1 22 68 55 30 1 0 8 chain 11123 chr13 115169878 + 73319402 73319563 MER107 203 - 30 203 155723 13 3 13 30 2 5 14 2 1 97 chain 9181 chr13 115169878 + 73324619 73324735 MER85 139 - 0 126 164651 40 0 10 76 chain 24303 chr13 115169878 + 73325288 73325613 L1MA5 2750 + 2325 2660 108644 42 0 12 183 1 0 69 2 1 28 chain 43034 chr13 115169878 + 73380513 73381124 L1PA7 6471 - 1 608 65376 31 44 43 33 0 1 87 0 1 180 1 7 75 0 2 10 1 3 115 15 0 19 chain 5083 chr13 115169878 + 73381138 73381201 L1MB2 1706 - 305 368 194249 63 chain 451164 chr13 115169878 + 73402413 73408022 L1PA7 6471 - 2 5645 8731 10 4 0 340 6 0 125 5 4 175 1 3 154 0 4 33 2 1 944 0 4 460 0 2 272 0 3 97 3 2 23 0 4 76 0 2 146 1 0 2 0 5 55 3 1 491 17 35 13 0 1 14 0 1 259 8 10 50 29 7 138 0 2 149 1 0 220 0 1 49 4 0 204 0 2 57 5 6 543 0 19 28 6 10 387 chain 23390 chr13 115169878 + 73418480 73418767 L1PA7 6471 - 2 290 113697 151 4 6 93 1 0 38 chain 56167 chr13 115169878 + 73419122 73419963 L1PA8 5853 - 0 821 55030 91 5 3 18 2 1 52 12 10 68 2 0 27 0 4 17 1 0 8 2 0 158 0 8 7 36 0 160 8 17 17 5 6 39 0 2 56 0 2 50 chain 23409 chr13 115169878 + 73437506 73437813 AluY 311 + 0 300 113602 4 1 0 120 22 16 160 chain 64461 chr13 115169878 + 73443049 73443764 L1PA3long 6157 + 5442 6157 50816 715 chain 16853 chr13 115169878 + 73455374 73458219 L1MA3 4352 + 2327 4307 135964 199 2527 1666 68 2 0 22 1 0 6 1 0 19 chain 3304 chr13 115169878 + 73457082 73457120 L1MA3 4352 - 635 673 218896 38 chain 185223 chr13 115169878 + 73473004 73476130 L1PB1 5432 + 2551 5102 20477 38 0 4 144 2 1 95 8 9 147 0 1 154 1 2 36 0 1 29 5 11 77 9 20 64 0 1 4 1 0 338 2 6 163 0 1 251 0 1 55 0 2 171 3 4 77 350 35 53 1 0 63 5 12 74 8 10 96 318 14 265 0 3 19 chain 24340 chr13 115169878 + 73483623 73483918 AluSp 311 - 3 300 108419 135 0 1 85 0 1 75 chain 23348 chr13 115169878 + 73490252 73490536 AluSq2 311 + 8 290 113933 126 2 0 156 chain 4347 chr13 115169878 + 73500268 73500331 MER33 330 + 253 324 202628 42 1 9 20 chain 50316 chr13 115169878 + 73521776 73522372 L1PA7 6471 + 5862 6467 58777 240 0 2 32 0 6 222 0 3 92 2 0 8 chain 51322 chr13 115169878 + 73530971 73531791 L1PB1 5432 + 4633 5422 58086 74 0 1 97 4 3 4 0 1 91 0 2 197 3 0 10 2 1 24 1 0 8 1 0 12 4 1 9 3 1 51 24 22 39 1 0 15 3 0 15 27 16 5 1 0 14 2 0 24 1 0 20 1 0 14 1 0 18 chain 29155 chr13 115169878 + 73560814 73561128 AluYb8 318 - 5 318 88285 187 1 0 126 chain 17966 chr13 115169878 + 73567685 73567903 AluY 311 + 83 302 132946 49 0 1 169 chain 3244 chr13 115169878 + 73591146 73591240 MER20 218 - 19 104 220121 32 47 38 15 chain 22881 chr13 115169878 + 73608302 73608582 AluSp 311 + 10 287 116181 101 1 0 136 2 0 40 chain 24780 chr13 115169878 + 73623942 73624229 AluSc5 308 - 9 296 105996 287 chain 24398 chr13 115169878 + 73652644 73652933 L1PA7 6471 - 6 295 108086 289 chain 26639 chr13 115169878 + 73668974 73669280 AluYf5 307 - 1 307 97516 306 chain 28321 chr13 115169878 + 73698457 73698757 AluYa5 310 + 0 299 91866 132 1 0 167 chain 53950 chr13 115169878 + 73701407 73702222 Tigger1 2417 + 1591 2417 56404 47 41 42 252 4 3 49 0 2 140 10 20 25 20 22 62 3 0 162 chain 118964 chr13 115169878 + 73733225 73735046 L1PA15 4387 + 2557 4366 31433 57 9 8 4 0 1 503 78 85 60 5 3 30 1 0 30 0 1 41 0 2 65 8 9 43 5 10 55 0 1 227 0 1 20 24 18 60 3 1 40 1 0 83 0 1 88 2 1 26 1 0 54 24 19 13 1 0 48 8 5 44 3 1 12 11 6 22 1 0 11 chain 24565 chr13 115169878 + 73755201 73755496 AluSg7 307 + 10 302 107170 38 4 0 4 0 1 249 chain 24124 chr13 115169878 + 73755496 73755972 Tigger3b 1229 + 782 1154 109624 87 7 11 74 2 0 21 151 15 107 0 30 27 chain 9653 chr13 115169878 + 73765672 73765807 U4 144 + 8 144 162333 34 7 8 94 chain 8032 chr13 115169878 + 73801283 73801395 HY1 111 + 0 111 170855 9 2 1 101 chain 9367 chr13 115169878 + 73844479 73844592 MLT1A0 366 + 237 350 163726 113 chain 4876 chr13 115169878 + 73907148 73907203 L1PA16 3655 + 3523 3578 196536 55 chain 30021 chr13 115169878 + 73920022 73920435 L1P3 4156 - 3742 4150 84738 12 2 0 83 2 1 67 1 0 97 15 14 134 chain 9658 chr13 115169878 + 73928026 73928380 ERVL-B4-int 2334 - 1451 1784 162314 64 3 0 5 115 107 6 2 0 15 40 38 29 9 8 5 0 1 23 1 0 21 1 0 5 4 0 6 chain 112971 chr13 115169878 + 73950764 73952270 THE1B-int 1605 - 0 1605 33386 12 13 5 278 5 6 508 1 34 34 0 1 19 3 4 57 1 0 166 16 80 107 32 40 254 chain 11437 chr13 115169878 + 73960987 73961200 L1PA15 4387 + 4126 4327 154542 4 1 0 40 1 0 4 0 1 10 1 0 19 4 0 9 5 4 43 13 10 43 2 0 14 chain 3347 chr13 115169878 + 73962192 73962227 MLT1J1 437 - 166 201 218104 35 chain 14179 chr13 115169878 + 73980000 73980185 MER30 238 - 3 207 143959 21 0 1 82 4 22 78 chain 6794 chr13 115169878 + 73994959 73995118 L1PB2 3958 - 190 317 178996 11 3 1 31 30 1 43 16 15 25 chain 262806 chr13 115169878 + 74015153 74019379 MER61-int 3695 + 0 3652 15544 30 4 0 20 1 0 222 1 0 32 14 12 94 1 2 55 3 1 98 24 25 53 1 0 538 1 0 45 0 3 20 0 1 73 0 1 109 0 1 67 1 2 24 315 26 67 6 7 45 0 1 113 0 1 71 289 0 17 1 2 251 26 9 79 0 3 167 1 0 37 0 1 190 4 3 147 1 0 88 25 24 276 2 0 6 40 56 132 3 0 8 1 0 109 10 14 27 0 6 141 chain 354972 chr13 115169878 + 74027122 74031079 L1PA4 6152 - 0 3966 11477 857 0 1 393 0 1 638 0 3 1005 0 3 180 0 1 884 chain 84416 chr13 115169878 + 74032022 74033036 L1PA8A 6298 - 8 1028 41751 157 0 3 552 9 10 76 1 3 219 chain 86680 chr13 115169878 + 74042980 74044205 L1PB2 3958 + 2618 3832 40891 223 0 1 25 1 0 57 1 0 38 16 17 224 11 14 86 1 0 4 2 0 56 1 0 14 5 0 10 0 1 51 2 0 12 3 0 5 10 8 51 1 8 15 1 0 79 1 0 62 1 0 70 2 0 25 2 1 57 chain 28831 chr13 115169878 + 74074924 74075239 AluYa5 310 - 0 310 89757 187 5 0 123 chain 27474 chr13 115169878 + 74078768 74079132 THE1C 375 - 0 375 94733 25 1 0 163 1 2 90 4 12 75 0 3 5 chain 15862 chr13 115169878 + 74089460 74089708 L1PA8 5853 - 0 245 138770 83 38 36 46 2 1 5 1 0 43 0 1 30 chain 44948 chr13 115169878 + 74092979 74093526 MER41A 554 - 0 554 63122 83 0 6 425 0 1 39 chain 25748 chr13 115169878 + 74102769 74103072 AluSc5 308 - 5 308 101096 303 chain 3504 chr13 115169878 + 74112284 74112324 MER45A 178 + 105 145 215304 40 chain 3757 chr13 115169878 + 74143865 74143905 L1MB2 1706 + 1639 1679 210998 40 chain 134220 chr13 115169878 + 74148444 74150351 SVA_F 1814 + 335 1802 27165 579 49 0 33 4 19 172 406 0 664 chain 4204 chr13 115169878 + 74149023 74149072 SVA_F 1814 + 978 1105 122031 37 0 78 12 chain 6700 chr13 115169878 + 74149283 74149366 SVA_F 1814 + 1139 1222 156596 83 chain 10938 chr13 115169878 + 74149377 74149500 SVA_F 1814 + 1057 1179 144380 117 1 0 5 chain 16478 chr13 115169878 + 74149500 74149687 SVA_F 1814 + 1080 1265 130499 97 1 0 10 1 0 78 chain 4495 chr13 115169878 + 74154604 74154673 MADE1 96 - 0 96 200836 39 5 32 25 chain 25070 chr13 115169878 + 74200706 74201017 AluY 311 + 1 298 104457 104 0 1 20 8 0 162 7 0 10 chain 237010 chr13 115169878 + 74202238 74204891 L1PA5 6144 - 3 2665 16931 746 0 2 98 0 4 1036 0 3 773 chain 549763 chr13 115169878 + 74214664 74220688 L1PA2 6032 + 12 6032 1480 60 0 1 184 1 0 161 6 0 389 0 4 1980 1 0 2477 1 0 764 chain 4603 chr13 115169878 + 74224614 74224685 L1MA2 4263 - 153 216 199584 5 1 0 47 7 0 11 chain 4030 chr13 115169878 + 74295284 74295330 MIR 256 - 114 160 206923 46 chain 49861 chr13 115169878 + 74297904 74298521 L1PA8 5853 + 5063 5686 59113 19 0 2 109 0 3 33 0 3 164 1 0 125 0 2 37 3 2 46 2 0 78 chain 19986 chr13 115169878 + 74329779 74330187 L1PB1 5432 - 10 402 127186 18 1 0 11 2 1 22 1 0 24 2 0 14 1 0 4 15 23 5 2 0 4 1 0 16 6 5 38 1 0 16 2 1 49 32 25 8 1 0 25 3 0 10 1 0 73 chain 3962 chr13 115169878 + 74342286 74342329 MIR 256 + 84 127 207942 43 chain 12596 chr13 115169878 + 74354608 74354898 AluSp 311 - 4 311 149856 131 124 7 15 0 134 20 chain 21736 chr13 115169878 + 74372284 74372648 L1PA14 3548 + 3137 3485 121256 84 1 0 109 2 1 12 5 1 35 4 2 12 1 0 5 1 0 15 1 0 25 9 11 9 6 0 7 1 0 20 chain 11563 chr13 115169878 + 74415435 74415616 MER30 238 - 0 196 154055 48 7 4 46 14 32 66 chain 2795 chr13 115169878 + 74415858 74415890 MADE1 96 - 64 96 228803 32 chain 20510 chr13 115169878 + 74442195 74442452 AluSp 311 + 11 293 125594 37 0 17 170 3 11 47 chain 7579 chr13 115169878 + 74495241 74495344 LTR48 738 + 495 596 173671 27 1 0 19 1 0 55 chain 2987 chr13 115169878 + 74567842 74567891 MER63A 208 + 0 48 225322 25 5 4 19 chain 26167 chr13 115169878 + 74645541 74645848 AluY 311 + 0 301 99334 118 6 0 183 chain 4009 chr13 115169878 + 74648703 74648749 MLT1A0 366 - 264 310 207253 46 chain 36489 chr13 115169878 + 74660273 74660673 L1PA3long 6157 - 15 417 74255 132 0 1 190 0 1 78 chain 12947 chr13 115169878 + 74717877 74718052 MER47A 366 + 65 251 148444 62 0 12 80 1 0 32 chain 23084 chr13 115169878 + 74738901 74739294 L1MA3 4352 + 3937 4311 115221 156 27 15 5 3 0 87 14 18 17 4 0 23 2 0 20 5 4 6 1 0 23 chain 5519 chr13 115169878 + 74807978 74808066 L1MC 810 + 187 274 189849 66 7 6 15 chain 543004 chr13 115169878 + 74810092 74816105 L1PA3long 6157 - 8 6157 2342 148 0 1 692 0 4 955 0 3 2029 2 0 1413 9 137 349 6 0 211 0 6 46 1 2 82 0 1 70 chain 64033 chr13 115169878 + 74817090 74817877 L1PA8 5853 - 0 782 50995 83 0 1 8 2 1 19 5 4 58 1 0 71 2 0 44 1 0 42 0 1 427 1 0 23 chain 4665 chr13 115169878 + 74835180 74835252 L1PB1 5432 + 5346 5415 198906 24 1 0 23 2 1 10 1 0 11 chain 21730 chr13 115169878 + 74845107 74845405 MER1B 344 + 42 343 121278 174 4 0 49 13 20 58 chain 20036 chr13 115169878 + 74850106 74850404 L1PA8 5853 - 1 287 127022 21 7 1 70 1 0 19 2 1 41 8 7 13 2 1 68 2 0 44 chain 8385 chr13 115169878 + 74863238 74863341 HY1 111 - 0 101 168930 81 2 0 20 chain 22586 chr13 115169878 + 74908338 74908608 AluSp 311 - 18 290 117651 15 0 2 255 chain 432607 chr13 115169878 + 74921048 74926859 L1PA8 5853 + 50 5853 9246 22 1 0 5 7 5 13 49 13 49 10 12 63 36 31 35 42 28 48 1 2 59 6 9 208 29 21 450 1 2 74 16 39 220 1 4 44 1 0 145 1 0 86 0 17 257 11 9 255 5 9 197 0 4 372 25 26 6 1 0 37 0 1 34 0 1 211 1 4 210 1 0 324 1 0 757 0 1 252 0 22 262 5 4 52 0 2 10 21 0 238 0 4 196 4 5 6 1 0 24 0 1 17 1 0 46 2 0 70 1 0 8 2 1 53 1 0 18 1 0 93 chain 200334 chr13 115169878 + 74955180 74958004 L1PB1 5432 - 15 2807 19183 13 1 0 12 1 0 22 1 0 15 10 9 14 1 0 9 2 0 15 17 6 21 1 0 40 7 10 10 2 1 52 18 12 12 3 2 4 1 0 24 13 11 60 0 6 74 0 1 118 1 0 4 8 10 19 5 0 179 23 12 235 2 0 105 11 12 69 0 1 30 6 11 436 0 1 36 1 0 672 1 0 4 0 1 165 2 0 9 1 0 14 7 8 186 chain 117394 chr13 115169878 + 74975987 74977549 THE1A-int 1579 - 5 1579 31998 423 0 1 119 0 5 348 75 77 74 7 5 159 11 17 346 chain 24814 chr13 115169878 + 74977549 74977905 THE1A 353 - 0 353 105815 75 1 0 71 0 1 81 19 18 11 1 0 47 0 1 35 2 0 13 chain 17414 chr13 115169878 + 74985851 74986150 THE1B 368 + 0 306 134469 169 28 31 10 0 4 11 30 28 33 0 2 18 chain 15930 chr13 115169878 + 75000243 75000419 LTR12C 1709 - 1533 1709 138579 176 chain 560096 chr13 115169878 + 75000463 75006491 L1HS 6032 + 6 6032 351 693 7 0 886 0 1 492 0 2 111 3 0 1627 0 1 2149 0 4 60 chain 3835 chr13 115169878 + 75020907 75020949 L1PB4 2604 - 52 94 209846 42 chain 21166 chr13 115169878 + 75030209 75030458 L1PA8A 6298 + 6041 6290 123325 249 chain 3848 chr13 115169878 + 75047134 75047544 L1ME3A 1206 + 233 628 209672 27 344 329 39 chain 216594 chr13 115169878 + 75062208 75064843 L1PA7 6471 - 7 2620 18079 49 14 18 80 3 0 607 4 0 86 10 0 50 13 1 21 1 0 274 0 1 220 4 1 107 1 0 195 0 2 98 0 1 141 0 4 657 chain 15675 chr13 115169878 + 75066798 75066967 L1PA5 6144 - 3005 3174 139348 169 chain 256424 chr13 115169878 + 75066968 75070234 L1PA5 6144 + 3192 6144 15911 71 0 3 429 0 1 174 5 4 821 318 0 56 2 1 1058 0 1 236 1 2 95 chain 27313 chr13 115169878 + 75068476 75068786 AluYf4 310 + 0 310 95233 310 chain 13062 chr13 115169878 + 75091271 75091464 Tigger3a 397 - 85 253 147986 38 25 0 130 chain 531842 chr13 115169878 + 75110592 75116493 L1PA3long 6157 + 5 6142 3982 148 0 1 316 0 91 213 6 130 1488 0 4 313 0 5 1441 0 3 190 0 3 959 0 4 693 0 1 134 chain 27370 chr13 115169878 + 75119684 75119974 AluYd8 298 + 0 290 95050 290 chain 5274 chr13 115169878 + 75122468 75122535 MSTC 436 + 45 112 192266 67 chain 12043 chr13 115169878 + 75126088 75126280 MER30 238 - 4 201 152016 50 5 19 37 2 0 6 5 0 5 2 0 80 chain 15105 chr13 115169878 + 75154684 75154905 MER30 238 - 0 238 141013 48 3 0 63 4 0 7 1 21 16 1 4 48 0 1 30 chain 86862 chr13 115169878 + 75173752 75174830 L1PA7 6471 - 1 1095 40833 153 2 4 106 8 9 315 0 8 175 0 2 81 0 3 19 0 1 4 2 1 213 chain 26611 chr13 115169878 + 75174830 75175146 L1PA7 6471 + 5066 5382 97337 316 chain 3399 chr13 115169878 + 75193478 75193516 L1MA4 2864 + 2766 2804 217082 38 chain 18873 chr13 115169878 + 75204866 75205212 THE1B 368 + 0 368 130443 106 10 11 45 62 81 43 0 2 14 10 10 56 chain 35671 chr13 115169878 + 75223849 75224350 MLT2A2 560 + 0 512 75302 124 7 6 4 0 1 33 13 12 220 2 13 72 4 5 22 chain 19813 chr13 115169878 + 75232382 75232671 L1PB 1623 + 1172 1440 127772 106 1 0 4 0 1 26 23 1 70 1 2 58 chain 32549 chr13 115169878 + 75236482 75236896 L1PA7 6471 - 1 424 79944 12 2 1 26 0 11 30 1 0 35 1 0 169 0 2 47 1 0 90 chain 234652 chr13 115169878 + 75272410 75275015 L1PA5 6144 - 2 2608 17054 164 0 1 1846 0 1 52 1 0 542 chain 27858 chr13 115169878 + 75288785 75289249 Tigger1 2417 - 1521 1973 93500 215 21 5 99 69 73 60 chain 2670 chr13 115169878 + 75291318 75291356 L1ME1 1623 + 1455 1492 230770 29 1 0 8 chain 118764 chr13 115169878 + 75292348 75293806 LTR12C 1709 + 2 1707 31509 193 1 2 190 0 3 99 0 1 337 5 247 36 1 0 8 2 0 100 6 10 393 5 4 82 chain 3608 chr13 115169878 + 75371979 75372019 MER53 195 - 131 171 213507 40 chain 104451 chr13 115169878 + 75374130 75375270 L1PA3long 6157 + 5017 6157 35625 1140 chain 370400 chr13 115169878 + 75378376 75383020 HERVL-int 5654 + 1024 5644 11081 399 0 1 353 1 8 285 0 9 100 0 2 369 6 7 265 0 5 58 0 1 247 0 2 139 0 7 6 4 2 750 49 6 38 0 1 5 0 1 661 0 9 7 3 0 272 23 14 170 20 7 131 1 4 5 3 0 274 chain 29012 chr13 115169878 + 75383030 75383419 MLT2A1 477 + 0 399 88934 92 0 11 65 5 2 11 0 1 22 0 1 88 0 1 4 5 4 97 chain 39867 chr13 115169878 + 75383423 75383961 HERVL-int 5654 - 329 847 69510 93 18 7 172 26 17 229 chain 24975 chr13 115169878 + 75393505 75393968 MLT2A2 560 + 0 560 104938 180 1 0 120 127 225 35 chain 2697 chr13 115169878 + 75418680 75418713 Ricksha_c 1012 - 424 456 230259 5 1 0 27 chain 41765 chr13 115169878 + 75427769 75428250 L1PA5 6144 - 1056 1537 66948 481 chain 92452 chr13 115169878 + 75428255 75429316 L1PA5 6144 + 5084 6144 38824 99 0 1 295 0 3 235 9 4 423 chain 140897 chr13 115169878 + 75431271 75433007 L1PA8 5853 - 718 2503 26011 49 0 2 357 13 18 893 0 39 78 0 3 346 chain 88668 chr13 115169878 + 75448353 75449369 L1PA4 6152 + 5132 6152 40123 760 1 0 249 0 5 6 chain 3425 chr13 115169878 + 75498720 75498798 MLT1H1 527 - 10 86 216669 37 28 26 13 chain 4824 chr13 115169878 + 75502273 75502353 MADE1 96 - 1 96 197087 36 9 23 23 0 1 12 chain 311436 chr13 115169878 + 75507277 75511131 L1PA6 6164 + 2271 6152 12949 16 1 0 160 1 0 135 0 4 604 6 1 333 11 22 382 3 4 34 14 30 219 0 2 148 0 4 73 0 1 236 1 0 468 27 11 397 3 9 134 6 5 269 0 6 25 2 3 41 7 10 5 3 0 90 chain 5038 chr13 115169878 + 75531031 75531263 MLT1B 390 + 33 253 194748 12 9 6 5 0 1 38 11 7 20 117 111 20 chain 504266 chr13 115169878 + 75533338 75539732 L1PA7 6471 + 57 6470 6581 114 0 9 229 40 17 461 0 1 113 0 1 4 1 0 259 16 9 472 0 1 397 1 0 19 3 8 5 3 0 391 0 12 30 34 23 73 1 24 342 7 0 24 4 8 28 0 9 101 0 4 190 0 5 36 1 3 17 4 1 26 4 0 57 0 2 22 3 2 402 2 0 664 0 2 275 1 0 35 0 1 53 3 0 69 0 2 56 3 0 457 4 5 261 0 1 120 0 2 296 2 3 141 0 1 18 chain 22970 chr13 115169878 + 75542468 75542763 L1PA8 5853 - 0 289 115754 92 2 1 19 2 1 47 1 0 14 1 0 71 2 0 44 chain 44799 chr13 115169878 + 75557192 75557731 L1PA5 6144 - 16 547 63291 107 1 0 17 7 0 407 chain 3495 chr13 115169878 + 75579468 75579515 MADE1 96 - 50 96 215434 9 1 0 37 chain 23516 chr13 115169878 + 75579985 75580260 AluYk4 311 + 35 310 113036 275 chain 125321 chr13 115169878 + 75591910 75593478 L1PA8 5853 + 4282 5849 29297 82 1 0 223 1 9 413 2 0 275 12 13 267 1 0 44 2 0 70 2 1 10 1 0 51 2 1 19 2 1 88 chain 25212 chr13 115169878 + 75602309 75602665 THE1B 368 + 0 366 103677 44 6 21 103 1 0 14 14 10 174 chain 114666 chr13 115169878 + 75602667 75604215 THE1B-int 1605 + 0 1590 32896 25 3 0 5 9 12 217 0 1 172 33 50 327 15 16 23 0 23 386 0 2 242 8 5 36 0 1 47 chain 25470 chr13 115169878 + 75604230 75604583 THE1B 368 + 0 368 102355 44 8 23 21 0 1 85 5 4 190 chain 142874 chr13 115169878 + 75606430 75608007 L1PA3long 6157 - 10 1587 25668 1577 chain 65284 chr13 115169878 + 75609847 75610860 L1PA13 3608 + 2545 3549 50433 80 1 14 47 1 3 245 0 2 164 5 9 23 2 0 29 1 0 101 0 1 10 2 0 44 31 30 49 2 0 48 2 0 4 2 0 20 1 0 20 0 3 6 18 7 14 1 0 4 23 14 13 chain 25942 chr13 115169878 + 75623282 75623679 MSTA 426 - 0 424 100238 73 1 0 36 5 25 51 36 37 45 0 6 132 0 1 18 chain 18071 chr13 115169878 + 75637940 75638176 AluY 311 + 38 276 132673 94 0 1 5 7 8 130 chain 51910 chr13 115169878 + 75639710 75640318 L1PA7 6471 - 3 612 57677 10 0 2 142 7 6 449 chain 186449 chr13 115169878 + 75653687 75655761 L1PA3long 6157 + 4086 6157 20385 206 1 3 604 12 7 1251 chain 9523 chr13 115169878 + 75683723 75683830 U6 107 + 0 107 162962 107 chain 368624 chr13 115169878 + 75683831 75688420 L1PA8A 6298 + 1374 6292 11135 248 5 0 36 0 1 24 8 16 154 0 1 366 3 4 63 0 332 123 0 1 307 0 1 347 7 1 48 5 8 243 16 0 180 0 1 209 2 0 84 0 2 476 0 1 139 0 4 31 1 0 170 1 0 298 15 0 197 4 1 65 0 3 617 10 29 87 chain 15689 chr13 115169878 + 75696810 75696989 L1HS 6032 + 5860 6032 139304 15 7 0 157 chain 45585 chr13 115169878 + 75734179 75734733 MER41A 554 - 0 554 62424 554 chain 58682 chr13 115169878 + 75749125 75749812 L1PA7 6471 - 5 695 53591 533 0 3 154 chain 3704 chr13 115169878 + 75757255 75757297 LTR26 622 + 10 52 211882 42 chain 86454 chr13 115169878 + 75757297 75758399 MER11A 1151 + 0 1151 40987 79 7 15 8 1 0 128 1 0 50 0 1 13 0 11 254 4 0 97 0 1 22 0 1 139 1 2 41 3 0 5 0 35 89 7 8 86 1 0 66 chain 4301 chr13 115169878 + 75760322 75760388 LTR26B 539 + 0 72 203204 23 6 12 37 chain 41841 chr13 115169878 + 75762812 75763344 MLT2A2 560 - 5 560 66840 174 0 17 236 2 6 5 0 2 115 chain 41148 chr13 115169878 + 75765111 75765662 MLT2A2 560 + 0 560 67721 32 0 1 54 3 0 90 4 3 205 0 1 14 2 13 147 chain 44752 chr13 115169878 + 75809086 75809616 L1PA7 6471 - 14 545 63329 141 0 1 389 chain 545754 chr13 115169878 + 75815305 75821450 L1PA4 6152 - 16 6151 1981 244 1 0 425 0 3 338 0 1 677 6 5 4 0 1 499 0 1 2120 1 0 360 0 1 46 11 0 1167 3 0 243 chain 4571 chr13 115169878 + 75830655 75830704 MER5A 189 + 0 49 199982 49 chain 127797 chr13 115169878 + 75842401 75843907 LTR12C 1709 + 0 1709 28618 678 0 159 134 0 41 30 0 2 67 1 0 6 2 0 107 0 4 481 chain 30588 chr13 115169878 + 75847901 75848296 MER51B 395 - 14 395 83223 136 1 0 206 13 0 39 chain 147911 chr13 115169878 + 75849447 75851130 L1PA5 6144 - 0 1692 24887 248 0 1 600 0 4 348 0 1 116 0 1 49 0 1 266 0 1 56 chain 126554 chr13 115169878 + 75851130 75852568 L1PA5 6144 + 3017 4448 28928 142 5 0 11 1 0 107 3 2 1169 chain 14475 chr13 115169878 + 75855447 75855794 L1PB1 5432 - 10 327 142966 18 1 0 11 1 0 23 1 0 4 0 1 12 32 27 17 17 7 21 1 0 39 12 11 7 0 2 53 20 14 11 1 0 10 2 0 23 4 0 6 chain 12262 chr13 115169878 + 75855975 75856137 L1P5 443 + 268 437 151144 145 1 8 16 chain 14376 chr13 115169878 + 75879086 75879428 THE1B 368 + 0 349 143281 61 14 15 35 0 3 6 17 15 29 73 79 63 16 15 28 chain 25309 chr13 115169878 + 75894878 75895190 AluY 311 + 0 297 103176 13 0 1 112 16 0 171 chain 3895 chr13 115169878 + 75912035 75912079 MADE1 96 + 45 89 208923 44 chain 46651 chr13 115169878 + 75920298 75920868 L1PA7 6471 - 4 584 61495 9 0 1 5 0 2 62 0 8 82 5 4 407 chain 37074 chr13 115169878 + 75925556 75925982 L1PA4 6152 - 1 431 73422 17 1 0 242 1 0 54 0 6 111 chain 12402 chr13 115169878 + 75938062 75938306 MER4B 649 - 74 287 150631 122 76 45 46 chain 9386 chr13 115169878 + 75958123 75958233 L1PA4 6152 + 6004 6143 163627 66 0 29 44 chain 7404 chr13 115169878 + 75973198 75973277 AluYc 301 + 3 82 174745 79 chain 10792 chr13 115169878 + 75987595 75987748 MER30 238 + 68 238 157025 39 4 0 8 0 23 87 2 0 13 chain 19739 chr13 115169878 + 76022474 76022719 AluSp 311 + 53 297 127983 79 2 0 22 0 1 142 chain 37631 chr13 115169878 + 76038314 76038813 MER9a3 513 + 0 513 72648 18 0 2 91 0 1 67 12 13 64 1 0 37 2 12 129 0 1 78 chain 9621 chr13 115169878 + 76049973 76050095 Tigger4b 360 - 27 145 162487 36 4 0 82 chain 15696 chr13 115169878 + 76076446 76076740 THE1B 368 - 68 368 139282 56 42 47 28 1 0 72 2 3 20 18 19 55 chain 4688 chr13 115169878 + 76085716 76085796 MADE1 96 - 0 96 198658 15 0 27 9 11 0 45 chain 4929 chr13 115169878 + 76093379 76093483 LTR12C 1709 + 650 713 195948 33 41 0 30 chain 3138 chr13 115169878 + 76115316 76115349 MER8 282 - 249 282 222199 33 chain 4268 chr13 115169878 + 76116725 76116778 MER65A 464 - 411 464 203650 53 chain 28497 chr13 115169878 + 76200337 76200689 THE1A 353 - 0 351 91192 242 1 0 109 chain 27802 chr13 115169878 + 76233504 76233862 THE1A 353 - 0 353 93683 135 4 0 107 1 0 66 1 0 19 1 2 24 chain 73053 chr13 115169878 + 76251788 76252605 L1PA4 6152 - 9 830 47002 623 0 1 117 0 3 77 chain 21233 chr13 115169878 + 76254708 76254971 L1PA7 6471 - 1 264 123085 12 1 0 54 0 1 196 chain 23117 chr13 115169878 + 76261976 76262325 THE1B 368 + 0 353 115054 169 1 0 19 5 7 4 0 1 13 1 5 22 1 0 58 22 21 34 chain 22369 chr13 115169878 + 76271387 76271756 THE1B 368 - 0 368 118632 82 0 2 40 67 61 5 0 2 56 2 0 6 0 3 111 chain 72199 chr13 115169878 + 76273571 76274631 MER11B 1079 - 6 1079 47378 23 2 1 49 2 19 63 5 6 24 3 4 106 48 40 20 1 0 169 10 11 14 0 1 95 4 3 64 4 7 354 chain 257652 chr13 115169878 + 76282943 76285894 L1PA4 6152 - 9 6152 15833 842 1 0 73 0 1 697 0 1 1085 0 3183 113 3 1 12 0 10 125 chain 13903 chr13 115169878 + 76295701 76295952 L1PB1 5432 - 216 453 144905 35 18 15 7 2 0 3 2 0 9 0 2 7 1 0 24 19 11 124 chain 90528 chr13 115169878 + 76295985 76297298 L1PB1 5432 + 4109 5419 39461 334 0 6 165 0 3 4 0 1 17 0 1 172 2 1 107 8 38 13 0 1 131 1 0 9 9 2 24 1 0 7 0 2 9 2 0 3 2 0 7 14 12 41 1 0 17 1 0 45 1 0 15 1 0 4 18 8 18 26 21 23 1 0 21 1 0 13 10 0 15 chain 557723 chr13 115169878 + 76301763 76307913 L1PA3long 6157 - 0 6157 533 459 0 2 396 1 0 535 1 0 2913 0 5 798 0 2 1047 chain 16864 chr13 115169878 + 76349341 76349753 L1P4 1494 + 1034 1443 135928 68 11 12 85 0 1 51 121 108 26 11 13 12 2 0 3 1 0 8 0 9 13 chain 68033 chr13 115169878 + 76353952 76355012 MER11B 1079 - 5 1079 49234 24 2 1 156 8 9 15 8 9 34 5 6 24 0 2 7 61 53 16 1 0 45 12 11 66 8 16 56 0 1 56 0 1 38 4 3 56 5 6 45 0 4 89 0 5 144 0 1 75 chain 92579 chr13 115169878 + 76355270 76356294 L1PA3long 6157 - 5 1030 38793 673 0 1 351 chain 28105 chr13 115169878 + 76422215 76422757 L1PB1 5432 - 5 474 92632 5 2 0 18 1 0 13 1 0 21 1 0 21 8 6 12 7 4 30 14 1 16 1 0 44 1 0 15 2 1 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 20 57 18 52 0 1 67 1 0 18 chain 18103 chr13 115169878 + 76463540 76463907 MER4C 627 - 215 627 132591 55 0 2 5 1 0 5 6 5 51 16 64 23 11 12 42 23 34 8 11 0 22 3 0 61 6 5 18 chain 23883 chr13 115169878 + 76475196 76475578 THE1D 372 + 0 372 111004 75 19 0 22 7 8 62 1 2 4 1 0 19 0 2 26 20 26 126 chain 47663 chr13 115169878 + 76484312 76484882 PABL_A 660 + 4 575 60726 298 0 2 68 1 0 203 chain 18071 chr13 115169878 + 76517358 76517584 L1PA8A 6298 - 578 807 132677 146 1 4 79 chain 89808 chr13 115169878 + 76527995 76529029 L1HS 6032 - 3781 4815 39561 480 6 7 352 1 0 195 chain 287343 chr13 115169878 + 76529029 76532200 L1PA3long 6157 + 2982 6157 14199 1375 0 4 1796 chain 3162 chr13 115169878 + 76535650 76535685 L1PA3long 6157 - 253 288 221716 35 chain 23133 chr13 115169878 + 76535685 76535941 L1PA3long 6157 + 5898 6155 114985 111 0 1 145 chain 5816 chr13 115169878 + 76571768 76571874 L1MB2 1706 - 12 116 186984 57 9 10 5 1 0 9 1 0 16 1 0 7 chain 56569 chr13 115169878 + 76652611 76653376 L1PA8 5853 + 4474 5255 54813 61 3 5 128 1 2 189 6 11 117 0 4 7 5 9 248 chain 158959 chr13 115169878 + 76683296 76685220 L1PA7 6471 - 10 1947 23469 491 0 1 330 0 1 10 15 18 136 0 5 885 1 4 56 chain 6243 chr13 115169878 + 76705391 76705465 L1PA5 6144 + 6070 6144 183224 74 chain 4961 chr13 115169878 + 76722666 76722819 MER5A 189 - 32 160 195574 21 32 0 18 0 1 29 40 46 13 chain 5896 chr13 115169878 + 76745445 76745610 L1MA3 4352 + 4191 4322 186216 5 1 0 6 0 3 30 4 0 25 2 0 18 14 12 18 29 1 13 chain 44922 chr13 115169878 + 76767737 76768336 L1PREC2 3366 - 1054 1675 63151 25 1 3 36 0 1 459 0 1 22 22 40 34 chain 57522 chr13 115169878 + 76776241 76776945 L1PA8A 6298 - 7 724 54222 105 0 8 71 0 4 19 1 2 508 chain 32791 chr13 115169878 + 76781462 76781865 L1PA7 6471 - 3 405 79547 149 1 0 4 3 2 35 0 1 211 chain 19100 chr13 115169878 + 76788901 76789115 L1PA5 6144 - 18 231 129815 131 1 0 82 chain 66303 chr13 115169878 + 76809050 76810069 L1PREC2 3366 - 318 1303 49948 37 7 5 35 19 5 12 7 4 28 2 0 12 10 5 17 29 21 14 3 0 3 1 0 22 0 8 14 8 7 26 23 21 265 1 0 424 chain 277401 chr13 115169878 + 76813850 76817019 L1PA4 6152 - 12 3185 14784 248 1 0 74 1 2 627 0 1 801 0 1 34 0 4 287 0 1 120 1 2 761 13 9 201 chain 91794 chr13 115169878 + 76817019 76818086 L1P1 4361 + 10 1090 38879 298 1 5 136 0 10 397 1 0 234 chain 7504 chr13 115169878 + 76828952 76829277 MLT1A 405 - 16 405 174134 18 37 34 39 56 125 22 101 99 52 chain 117680 chr13 115169878 + 76841988 76843313 L1PA5 6144 - 5 1335 31900 838 0 4 279 0 1 208 chain 26852 chr13 115169878 + 76843313 76843616 L1PA5 6144 + 4504 4807 95287 303 chain 31303 chr13 115169878 + 76845209 76845578 L1PA5 6144 - 9 385 81987 136 5 11 5 0 1 223 chain 14199 chr13 115169878 + 76850416 76850750 L1PB1 5432 + 5114 5422 143883 32 1 0 10 45 39 25 2 1 16 1 0 42 2 1 16 22 12 9 0 2 7 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 14886 chr13 115169878 + 76853779 76854097 L1PA17 2846 + 2374 2691 141667 19 0 1 25 7 11 31 71 72 44 5 1 13 1 0 41 1 0 18 1 0 41 chain 91274 chr13 115169878 + 76868810 76869959 SVA_B 1603 + 0 1598 39207 18 1 12 10 6 1 424 0 155 16 1 118 9 0 40 20 12 136 55 0 1 142 0 3 38 0 2 38 0 1 359 chain 73809 chr13 115169878 + 76872475 76873324 L1PA5 6144 + 5288 6131 46611 461 4 0 275 2 0 107 chain 18050 chr13 115169878 + 76913675 76913882 AluSp 311 + 93 300 132735 207 chain 519349 chr13 115169878 + 76916454 76922866 L1PA5 6144 + 0 6132 5227 135 32 58 752 0 4 120 2 0 100 9 0 665 316 0 293 0 1 251 0 4 422 0 1 167 8 12 894 0 1 25 0 1 846 0 1 403 0 3 842 0 1 130 chain 19923 chr13 115169878 + 76924264 76924534 L1PA7 6471 - 1 264 127389 146 0 1 25 9 0 22 5 4 13 0 1 44 0 1 6 chain 17057 chr13 115169878 + 76930730 76931073 THE1B 368 + 0 335 135440 13 2 0 91 19 20 53 24 15 12 3 0 5 36 41 56 1 0 4 0 1 24 chain 8789 chr13 115169878 + 76956238 76956335 L1PA5 6144 + 5901 5998 166709 97 chain 12353 chr13 115169878 + 76956336 76956470 L1PA5 6144 + 5998 6132 150822 134 chain 26101 chr13 115169878 + 76956756 76957057 AluY 311 + 4 303 99615 119 1 0 9 0 1 162 2 0 8 chain 2901 chr13 115169878 + 76972803 76972833 LTR16A1 462 - 377 407 227040 30 chain 5355 chr13 115169878 + 76994685 76994754 L1PA7 6471 - 6 73 191482 7 2 0 60 chain 3149 chr13 115169878 + 76999334 76999380 MER47C 97 + 21 66 221949 12 2 1 32 chain 16489 chr13 115169878 + 77002447 77002667 Tigger3c 601 + 362 581 136962 125 2 1 93 chain 51658 chr13 115169878 + 77005791 77006432 L1PA7 6471 + 5821 6469 57856 311 1 2 180 34 40 115 chain 58090 chr13 115169878 + 77017863 77018504 L1PA2 6032 + 5391 6029 53929 623 3 0 15 chain 9074 chr13 115169878 + 77052321 77052439 L1PA7 6471 - 1 113 165193 6 6 0 106 chain 10150 chr13 115169878 + 77075626 77075972 MLT1A0 366 + 0 350 159849 25 66 64 11 3 0 17 121 130 103 chain 19478 chr13 115169878 + 77093875 77094167 MER51E 476 + 135 476 128722 4 0 1 14 6 41 14 6 0 172 10 5 20 0 24 46 chain 29199 chr13 115169878 + 77110989 77111330 L1PA6 6164 + 5817 6158 88057 341 chain 293147 chr13 115169878 + 77119203 77122368 L1PA2 6032 - 1 3166 13811 3165 chain 5323 chr13 115169878 + 77123627 77123708 L1MA8 2339 + 1979 2059 191787 27 6 5 48 chain 70190 chr13 115169878 + 77149440 77150432 MER11A 1151 + 0 1136 48312 85 0 91 23 1 0 89 14 10 136 9 10 90 12 13 135 6 9 54 0 4 64 12 46 54 0 9 146 0 2 41 5 9 16 chain 36995 chr13 115169878 + 77155150 77155559 L1PA3long 6157 - 1089 1498 73022 409 chain 97473 chr13 115169878 + 77155559 77156628 L1PA3long 6157 + 5073 6142 37432 1069 chain 124610 chr13 115169878 + 77168850 77170343 L1PA7 6471 + 4956 6465 29505 288 0 1 354 0 4 21 0 2 85 0 3 262 0 3 318 11 12 6 0 1 24 0 1 124 chain 9019 chr13 115169878 + 77179043 77179144 L1PA5 6144 + 4093 4194 165497 101 chain 53674 chr13 115169878 + 77179146 77179744 L1PA5 6144 + 4194 4792 56563 598 chain 114468 chr13 115169878 + 77179762 77181076 L1PA5 6144 + 4806 6130 32954 469 0 4 15 0 6 681 1 6 8 5 0 135 chain 42863 chr13 115169878 + 77184947 77185508 LTR19B 566 - 0 566 65580 49 3 0 19 7 12 101 3 1 291 0 5 88 chain 565019 chr13 115169878 + 77186958 77192986 L1HS 6032 - 0 6032 207 2689 1 0 1464 0 5 1874 chain 24436 chr13 115169878 + 77225833 77226169 L1PREC2 3366 - 2156 2491 107880 100 0 1 30 4 3 67 2 1 133 chain 24128 chr13 115169878 + 77226570 77226867 L1PA8A 6298 + 5993 6291 109598 195 5 6 97 chain 12925 chr13 115169878 + 77235262 77235461 L1PA16 3655 + 3388 3593 148531 37 10 19 125 13 10 14 chain 16842 chr13 115169878 + 77276295 77276503 L1PA7 6471 - 246 451 136012 87 4 1 117 chain 19052 chr13 115169878 + 77276503 77276732 L1PA7 6471 + 6242 6469 129962 217 2 0 10 chain 27657 chr13 115169878 + 77300954 77301309 THE1A 353 + 0 353 94191 109 2 1 92 1 0 151 chain 124708 chr13 115169878 + 77301309 77302875 THE1A-int 1579 + 0 1576 29474 233 8 11 48 6 5 4 0 1 171 16 13 821 0 10 259 chain 18471 chr13 115169878 + 77307046 77307410 THE1B 368 - 0 368 131582 14 13 12 13 24 23 66 8 16 10 4 8 4 0 1 9 24 15 60 7 9 108 chain 13137 chr13 115169878 + 77318096 77318418 L1PB1 5432 + 5139 5427 147693 7 1 0 9 8 4 8 2 0 53 2 1 11 5 4 37 9 8 15 2 0 6 16 6 19 7 4 15 6 4 20 1 0 22 1 0 12 2 1 7 1 0 10 3 0 5 chain 25973 chr13 115169878 + 77395658 77396022 THE1B 368 - 0 368 100128 75 1 0 99 0 2 23 1 0 29 2 3 91 1 6 26 3 1 13 chain 12872 chr13 115169878 + 77415688 77415950 L1PB1 5432 + 5179 5420 148741 41 2 1 15 1 0 44 1 0 12 28 16 7 0 2 10 2 0 5 20 17 21 1 0 21 1 0 13 1 0 16 chain 8196 chr13 115169878 + 77418913 77419033 L1MA7 2200 + 1796 1912 169971 34 2 1 48 3 0 33 chain 2929 chr13 115169878 + 77445885 77445917 L1MB3 1562 - 47 79 226513 32 chain 106876 chr13 115169878 + 77471894 77473352 THE1B-int 1605 - 81 1571 35011 68 8 7 492 6 8 38 0 3 104 0 1 4 48 46 302 4 29 189 6 7 116 0 3 73 chain 27124 chr13 115169878 + 77473384 77473747 THE1B 368 - 0 368 95850 194 3 2 114 0 3 13 1 6 23 2 0 13 chain 193963 chr13 115169878 + 77491509 77493990 L1PBa1 4058 + 115 2598 19679 48 0 1 4 1 0 4 0 1 26 1 0 211 0 9 9 2 0 189 14 13 23 14 16 157 0 9 7 9 0 614 2 1 42 2 1 70 4 5 81 7 6 79 0 4 496 2 0 42 0 2 181 8 0 132 chain 57059 chr13 115169878 + 77493990 77494932 L1PB1 5432 + 4496 5420 54373 130 4 0 36 0 14 27 4 5 306 23 25 7 0 1 5 2 1 29 0 3 18 1 2 6 2 0 4 3 0 23 1 0 9 16 11 9 2 0 53 2 1 10 7 6 59 1 0 4 28 17 10 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 7073 chr13 115169878 + 77496039 77496123 MLT1A 405 - 28 112 176931 84 chain 21915 chr13 115169878 + 77501225 77501582 L1PA8 5853 + 5513 5853 120566 51 1 0 45 2 0 69 38 26 36 2 1 15 6 5 92 chain 20055 chr13 115169878 + 77505850 77506130 L1PA8 5853 + 5580 5853 126954 28 2 0 71 1 0 14 3 2 12 1 0 9 1 0 6 0 1 17 2 1 19 4 3 90 chain 44963 chr13 115169878 + 77519732 77520390 PABL_A 660 - 7 660 63105 64 11 10 263 71 23 17 5 49 227 chain 19201 chr13 115169878 + 77532966 77533340 THE1C 375 - 0 360 129521 156 25 9 21 1 0 4 77 80 90 chain 106456 chr13 115169878 + 77533363 77534959 THE1C-int 1605 - 8 1605 35134 272 0 7 10 7 0 8 0 3 74 1 0 53 0 1 4 10 7 396 52 57 248 86 12 46 4 6 124 7 16 96 8 65 75 3 5 12 chain 68985 chr13 115169878 + 77537558 77538309 L1PA2 6032 + 5280 6032 48819 672 0 1 79 chain 69001 chr13 115169878 + 77540794 77541899 L1PA10 4194 - 2968 4019 48806 703 0 3 30 4 2 33 2 11 39 1 0 10 7 0 15 1 0 10 1 0 7 2 1 6 1 0 21 2 0 11 56 30 7 1 0 11 0 1 4 8 6 15 1 0 4 59 47 11 9 0 13 chain 3845 chr13 115169878 + 77542838 77542882 THE1B 368 - 80 124 209715 44 chain 11261 chr13 115169878 + 77554036 77554188 L1PA8 5853 + 5703 5853 155186 36 3 2 19 1 0 93 chain 61666 chr13 115169878 + 77570455 77571800 L1PB1 5432 - 9 1003 52049 4 1 0 8 0 3 8 4 0 8 1 0 22 1 0 24 2 0 14 1 0 8 2 0 16 38 30 42 1 0 11 6 5 20 3 0 14 22 20 7 2 0 3 2 0 12 1 0 6 1 0 20 20 15 275 1 2 13 0 1 84 9 8 10 1 5 28 0 3 25 329 0 27 0 1 12 0 4 176 chain 56576 chr13 115169878 + 77583688 77584402 L1PA7 6471 + 5758 6469 54807 84 19 21 219 0 4 7 7 3 365 5 0 8 chain 8699 chr13 115169878 + 77585497 77586213 L1MB8 1703 + 939 1588 167196 60 1 0 9 587 521 59 chain 22945 chr13 115169878 + 77643729 77644015 AluY 311 + 20 295 115882 103 14 3 169 chain 83622 chr13 115169878 + 77683840 77684940 MER11A 1151 + 0 1151 42065 79 0 8 141 1 0 66 0 11 244 11 10 107 8 9 68 0 4 115 0 33 62 10 4 32 4 5 59 0 2 26 11 10 56 chain 3277 chr13 115169878 + 77718108 77718145 Ricksha_c 1012 + 548 585 219417 37 chain 17803 chr13 115169878 + 77733625 77733973 THE1D 372 + 0 370 133398 46 19 18 38 4 3 15 78 104 60 2 0 86 chain 27228 chr13 115169878 + 77743261 77743551 AluYd8 298 + 0 290 95507 290 chain 545468 chr13 115169878 + 77773164 77779192 L1PA3long 6157 + 0 6156 2017 151 1 2 615 8 136 2243 0 3 256 3 0 1894 1 0 856 chain 67655 chr13 115169878 + 77819033 77819879 L1PA7 6471 + 5593 6455 49386 6 0 4 15 1 3 77 0 4 471 1 0 142 0 1 41 15 21 77 chain 15800 chr13 115169878 + 77822099 77822276 L1PA4 6152 + 5964 6141 138955 177 chain 30123 chr13 115169878 + 77939809 77940125 AluYb8 318 - 2 318 84414 316 chain 156239 chr13 115169878 + 77993497 77995645 L1PB1 5432 - 5 2126 23828 4 1 0 5 1 0 14 1 0 9 0 3 22 1 0 24 2 0 15 1 0 4 2 0 11 10 3 13 1 0 4 4 1 15 4 3 35 24 22 53 2 0 8 17 12 9 2 0 23 5 0 8 5 8 292 1 2 182 0 2 241 8 7 154 0 11 222 1 0 19 6 5 186 2 0 38 26 21 411 chain 27857 chr13 115169878 + 77995670 77996191 L1PB1 5432 + 4938 5422 93501 166 0 1 8 3 0 23 2 1 7 1 0 13 5 1 10 2 0 48 26 24 41 43 31 10 7 0 10 2 1 13 2 0 24 1 0 22 1 0 12 1 0 18 chain 22996 chr13 115169878 + 78003686 78004041 THE1B 368 - 0 367 115640 119 41 51 29 1 0 106 6 9 53 chain 119738 chr13 115169878 + 78009931 78011397 L1PA7 6471 + 4991 6451 31136 84 0 1 60 0 2 237 0 1 241 1 0 81 0 2 67 16 4 544 0 1 135 chain 482969 chr13 115169878 + 78011968 78017618 L1PA6 6164 - 9 6164 7624 1953 0 1 496 0 1 10 12 2 392 1 0 106 1 0 427 0 1 834 0 1 113 0 1 508 0 1 707 0 511 90 chain 23757 chr13 115169878 + 78024841 78025104 AluY 311 + 39 301 111725 94 1 0 168 chain 115647 chr13 115169878 + 78048611 78050154 LTR12C 1709 - 0 1709 32573 84 1 0 397 44 13 97 4 161 120 1 0 388 3 0 60 8 51 39 7 0 7 0 1 4 1 9 278 chain 121722 chr13 115169878 + 78056646 78058400 L1PA15 4387 - 31 1738 30471 28 6 1 11 2 0 40 8 9 50 1 0 8 2 0 24 1 0 44 12 11 26 1 0 172 6 5 37 2 0 57 4 0 20 2 0 112 47 34 57 0 1 384 1 2 55 2 0 131 1 2 101 12 1 132 3 0 152 chain 9385 chr13 115169878 + 78062472 78062678 L1MA3 4352 - 0 195 163631 22 9 4 12 1 0 22 14 10 22 2 0 25 10 6 16 3 8 48 chain 22913 chr13 115169878 + 78079257 78079554 AluSc 308 + 11 308 116039 61 0 6 4 1 0 41 1 0 135 3 0 39 1 0 11 chain 27230 chr13 115169878 + 78081634 78081924 AluYa5 310 - 4 294 95499 290 chain 16363 chr13 115169878 + 78085856 78086083 LTR18A 364 + 97 353 137305 124 4 0 7 8 41 84 chain 8972 chr13 115169878 + 78088791 78088952 MER30 238 - 8 191 165761 40 3 1 29 1 7 22 6 0 6 11 35 43 chain 23668 chr13 115169878 + 78113676 78113967 AluYk4 311 - 16 310 112212 97 6 9 188 chain 28378 chr13 115169878 + 78117217 78117517 AluYa5 310 - 10 310 91667 300 chain 12795 chr13 115169878 + 78117760 78117920 L1PA16 3655 - 85 245 149076 160 chain 89513 chr13 115169878 + 78126153 78127163 L1PA3long 6157 - 322 1319 39805 534 0 1 273 25 11 178 chain 6012 chr13 115169878 + 78198545 78198715 MLT1B 390 - 173 368 185116 9 3 0 3 10 0 37 58 96 50 chain 2723 chr13 115169878 + 78201552 78201596 L1MA4 2864 + 2723 2765 229846 15 5 3 24 chain 30041 chr13 115169878 + 78207289 78207604 AluYb8 318 + 0 315 84682 315 chain 27377 chr13 115169878 + 78228293 78228711 MSTA 426 - 2 426 95030 69 15 19 90 2 1 38 2 0 51 8 12 11 1 0 29 3 4 71 1 2 27 chain 403773 chr13 115169878 + 78242917 78248236 L1PB1 5432 + 19 5404 9978 33 5 7 485 1 0 45 1 0 108 3 6 57 5 6 629 1 0 7 2 0 4 6 0 311 0 3 43 0 4 35 0 1 109 0 4 520 0 1 63 0 10 9 0 1 155 1 22 194 0 3 711 0 4 125 0 2 39 5 6 273 10 44 158 5 22 736 0 2 85 5 0 16 3 0 21 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 57 26 14 19 3 1 4 1 0 14 11 9 15 1 0 21 1 0 13 chain 142385 chr13 115169878 + 78250608 78252235 L1PA4 6152 + 4550 6151 25744 1074 36 10 517 chain 128097 chr13 115169878 + 78257349 78258758 L1PA3long 6157 - 0 1410 28545 856 0 1 553 chain 41008 chr13 115169878 + 78275901 78276344 L1PA2 6032 - 0 443 67890 443 chain 446387 chr13 115169878 + 78282610 78288316 L1PA7 6471 + 1015 6466 8865 809 0 4 201 29 36 248 324 0 314 30 18 244 0 4 207 0 4 135 0 4 209 0 7 37 2 1 668 0 1 10 0 1 28 0 1 11 0 5 46 1 0 371 1 0 27 4 12 96 1 4 711 1 35 97 0 3 74 0 2 431 1 0 234 1 2 50 1 0 40 3 0 9 chain 41829 chr13 115169878 + 78326612 78327142 MLT2A2 560 - 0 560 66856 147 0 11 170 0 18 27 0 2 5 1 0 180 chain 141034 chr13 115169878 + 78331946 78333956 L1PB2 3958 - 125 2108 25979 47 21 20 13 7 5 12 2 0 57 1 0 61 1 0 50 6 7 42 0 1 67 9 5 14 0 2 53 6 0 16 2 1 53 3 1 18 5 7 11 1 2 344 1 0 203 9 0 45 1 2 88 0 5 52 0 1 47 1 0 4 7 5 300 20 11 168 0 1 142 chain 3542 chr13 115169878 + 78347835 78347878 MER45A 178 - 67 110 214683 43 chain 80050 chr13 115169878 + 78378775 78379904 L1PB2 3958 - 161 1268 43570 9 0 1 8 5 4 19 2 0 77 1 0 62 1 0 56 34 25 77 12 7 13 2 0 64 7 0 12 0 3 53 2 0 79 0 4 159 0 1 139 2 1 234 chain 44922 chr13 115169878 + 78415221 78415745 L1PA7 6471 + 5946 6470 63149 524 chain 112756 chr13 115169878 + 78453933 78455160 L1PA3long 6157 - 0 1228 33460 318 0 1 909 chain 22100 chr13 115169878 + 78500001 78500275 THE1B-int 1605 + 1158 1432 119785 274 chain 45473 chr13 115169878 + 78500292 78500896 THE1A-int 1579 - 985 1579 62522 5 0 1 76 24 8 110 0 1 63 0 1 26 0 1 215 0 1 27 5 6 53 chain 30451 chr13 115169878 + 78507357 78507767 LTR7 482 - 0 482 83529 49 12 14 142 0 31 21 0 1 109 8 46 69 chain 291948 chr13 115169878 + 78508950 78513112 HERVH-int 3825 - 0 3825 13909 225 0 2 153 36 37 173 5 7 139 0 3 984 11 16 82 0 4 219 15 0 93 0 4 81 4 3 129 389 40 84 1 0 296 9 10 95 0 1 166 1 0 80 2 1 30 0 38 26 30 59 60 70 12 141 1 0 332 chain 1495 chr13 115169878 + 78512590 78512637 HERVH-int 3825 - 3245 3291 205451 9 2 1 36 chain 478882 chr13 115169878 + 78533279 78538916 L1PA5 6144 + 582 6137 7771 442 1 0 4 1 2 119 0 3 470 0 1 232 1 0 88 0 1 159 1 0 210 6 1 180 0 1 215 93 6 407 0 1 558 9 8 113 1 12 227 1 0 309 0 2 207 0 1 1119 7 0 457 chain 5844 chr13 115169878 + 78535433 78535497 L1PA5 6144 + 2629 2693 186737 64 chain 8698 chr13 115169878 + 78544455 78544594 LTR2 463 - 0 140 167202 88 23 24 28 chain 273775 chr13 115169878 + 78544736 78548079 Harlequin-int 5206 - 1730 5081 14986 651 6 5 253 3 1 75 8 0 194 0 1 1003 2 1 117 0 1 161 0 17 165 0 2 278 2 4 63 8 0 195 0 3 150 0 2 9 chain 32868 chr13 115169878 + 78549747 78550209 LTR2 463 - 0 463 79425 26 32 32 30 14 15 360 chain 8675 chr13 115169878 + 78551987 78552103 L1MA10 1535 - 516 633 167335 22 1 2 93 chain 3728 chr13 115169878 + 78555837 78556192 MLT1B 390 - 14 381 211508 19 21 0 8 246 269 11 7 17 43 chain 35087 chr13 115169878 + 78569804 78570275 L1PA8 5853 + 5354 5853 76067 40 7 5 165 1 0 46 2 0 68 2 1 63 1 0 18 1 0 36 1 37 20 chain 319445 chr13 115169878 + 78574546 78578610 L1PA8 5853 + 1772 5853 12616 137 0 2 107 20 0 257 5 9 197 0 4 119 14 11 7 0 4 10 1 0 143 0 4 172 0 4 35 4 0 227 1 0 14 13 28 130 0 1 66 12 7 154 0 13 103 0 2 272 0 1 330 12 15 416 0 1 236 2 0 46 1 2 506 1 0 44 2 0 70 2 1 10 1 0 51 2 1 19 2 1 18 0 1 73 chain 16631 chr13 115169878 + 78580104 78580314 L1PA8 5853 + 5354 5562 136582 40 7 5 163 chain 10084 chr13 115169878 + 78580315 78580433 L1PA8 5853 + 5562 5678 160160 48 2 0 68 chain 4301 chr13 115169878 + 78580445 78580497 L1PA8 5853 + 5688 5740 203196 52 chain 8249 chr13 115169878 + 78580499 78580611 L1PA8 5853 + 5741 5853 169690 19 1 0 19 0 1 73 chain 185292 chr13 115169878 + 78589916 78592591 L1PB1 5432 - 5 2590 20472 4 1 0 19 1 0 13 1 0 21 2 1 23 2 0 15 7 4 19 15 6 6 2 0 14 24 4 42 1 0 14 3 2 52 2 0 9 2 0 3 2 0 10 1 0 4 0 11 16 85 21 215 6 0 113 3 0 144 0 1 30 0 7 59 0 1 12 22 18 178 0 1 38 0 13 58 1 0 66 5 0 6 0 5 234 1 0 167 2 0 19 1 0 4 10 11 168 0 2 271 0 11 233 7 0 167 chain 30032 chr13 115169878 + 78594164 78594479 AluYb8 318 + 0 315 84710 315 chain 181795 chr13 115169878 + 78621771 78623858 L1PA5 6144 - 3 2087 20809 6 4 0 1702 0 1 375 chain 73420 chr13 115169878 + 78630688 78631766 MER11A 1151 - 5 1151 46827 73 9 7 78 18 5 16 2 1 45 0 1 58 44 27 155 2 3 139 0 1 91 5 6 110 0 2 30 10 6 62 1 0 76 0 99 19 1 2 34 chain 53256 chr13 115169878 + 78633215 78633931 LTR17 781 + 0 754 56855 59 1 0 97 1 0 16 0 1 5 4 3 116 1 0 30 1 0 10 0 18 165 0 1 194 3 26 13 chain 95052 chr13 115169878 + 78648276 78649461 L1PA8 5853 - 1390 2585 38077 9 0 1 334 0 1 157 1 2 88 0 1 351 15 20 105 0 1 78 1 0 4 0 1 42 chain 16753 chr13 115169878 + 78649461 78649659 L1PA8 5853 + 4492 4690 136022 198 chain 26568 chr13 115169878 + 78649659 78649969 L1PA8 5853 + 4695 5005 97770 310 chain 45288 chr13 115169878 + 78649974 78650529 L1PA8 5853 + 5009 5564 62732 168 0 1 343 1 0 43 chain 4104 chr13 115169878 + 78650530 78650576 L1PA8 5853 + 5564 5610 205879 46 chain 5672 chr13 115169878 + 78650578 78650639 L1PA8 5853 + 5610 5671 188372 61 chain 2842 chr13 115169878 + 78650664 78650709 L1PA8 5853 + 5702 5740 227977 6 7 0 32 chain 8492 chr13 115169878 + 78650731 78650824 L1PA8 5853 + 5760 5853 168335 93 chain 17606 chr13 115169878 + 78654015 78654212 L1PA4 6152 - 5 203 133976 150 0 1 47 chain 31277 chr13 115169878 + 78655900 78656266 L1PA6 6164 + 5796 6162 82024 366 chain 28272 chr13 115169878 + 78663607 78663974 L1MA2 4263 + 2311 2674 92032 123 1 2 103 1 0 14 1 0 32 1 0 59 1 0 7 1 0 23 chain 119937 chr13 115169878 + 78669062 78670376 L1PA2 6032 + 4718 6028 31079 1303 4 0 7 chain 27117 chr13 115169878 + 78675999 78676283 AluYb9 318 - 0 284 95876 284 chain 24125 chr13 115169878 + 78694329 78694689 THE1D 372 - 13 372 109615 119 1 7 12 31 33 133 9 0 55 chain 12543 chr13 115169878 + 78702403 78702658 MSTA 426 - 180 426 150071 10 2 0 31 1 0 21 1 0 13 52 0 13 13 60 98 chain 21968 chr13 115169878 + 78724571 78724890 MLT2A1 477 + 0 477 120361 108 1 36 24 6 10 25 2 1 94 4 126 14 2 0 39 chain 108545 chr13 115169878 + 78731986 78733193 L1PA4 6152 - 9 1219 34550 245 1 0 590 0 4 371 chain 100847 chr13 115169878 + 78857317 78858441 L1PA3long 6157 - 0 1127 36549 155 1 3 463 0 1 505 chain 86144 chr13 115169878 + 78858441 78859425 L1P1 4361 + 3362 4341 41098 631 1 0 157 1 0 148 1 0 7 1 0 23 2 1 12 chain 7289 chr13 115169878 + 78860445 78860539 L1MA3 4352 + 3836 3927 175514 63 3 0 28 chain 23055 chr13 115169878 + 78915465 78915816 THE1A 353 - 0 353 115376 35 0 2 97 1 0 85 17 15 6 0 2 33 6 8 17 0 2 4 1 0 32 2 0 15 chain 5180 chr13 115169878 + 78929398 78929463 HY3 101 - 36 101 193223 65 chain 4119 chr13 115169878 + 78932614 78932768 MER5B 177 - 9 177 205661 15 0 1 23 89 102 27 chain 57964 chr13 115169878 + 78945667 78946597 L1PB3 3668 - 48 935 53994 6 1 0 15 6 2 4 0 1 10 1 0 11 9 5 22 1 0 15 3 1 25 1 0 5 1 0 16 21 5 81 9 8 97 1 0 75 18 20 5 0 2 171 17 8 5 3 0 17 2 0 173 1 0 82 chain 52260 chr13 115169878 + 78954607 78955226 L1PA7 6471 - 2 621 57456 13 1 0 324 0 1 281 chain 28379 chr13 115169878 + 78969322 78969643 AluYb9 318 + 0 316 91664 123 3 0 3 2 0 190 chain 5081 chr13 115169878 + 78969646 78969701 MLT1B 390 - 303 358 194285 55 chain 36642 chr13 115169878 + 78999640 79000120 LTR71B 605 - 103 605 74036 351 16 39 39 1 0 73 chain 40527 chr13 115169878 + 79004632 79005205 LTR71B 605 - 0 605 68554 33 0 1 12 0 3 26 0 1 26 6 11 105 0 1 26 20 19 190 0 23 29 0 1 20 8 6 72 chain 14721 chr13 115169878 + 79019305 79019629 THE1B 368 - 20 346 142200 36 7 6 56 83 84 31 26 28 85 chain 9584 chr13 115169878 + 79019684 79019856 L1PA16 3655 - 36 194 162677 16 44 30 112 chain 4273 chr13 115169878 + 79024377 79024445 L1MA3 4352 + 4258 4323 203567 23 1 0 7 1 0 26 1 0 9 chain 13766 chr13 115169878 + 79030094 79030251 L1PA8A 6298 - 1026 1184 145382 64 0 1 93 chain 80596 chr13 115169878 + 79030263 79031425 L1PA8A 6298 + 5285 6291 43345 204 1 4 56 8 9 22 165 0 426 13 17 9 0 1 258 chain 16466 chr13 115169878 + 79058211 79058408 L1PA6 6164 + 5965 6162 137022 197 chain 28988 chr13 115169878 + 79064429 79064832 MER57A1 433 - 23 433 89050 26 5 2 60 14 22 22 4 6 272 chain 33004 chr13 115169878 + 79074938 79075304 L1PA4 6152 - 11 379 79208 10 0 2 356 chain 550438 chr13 115169878 + 79087354 79093522 L1PA3long 6157 - 10 6151 1387 614 0 1 1477 0 1 109 0 1 1753 0 1 242 1 0 381 0 2 530 13 2 259 23 9 50 8 1 708 chain 524301 chr13 115169878 + 79100206 79106318 L1PA5 6144 + 0 6132 4741 129 0 14 1021 14 5 824 7 12 1274 1 0 394 0 1 670 1 5 944 1 5 70 0 2 762 chain 22885 chr13 115169878 + 79143875 79144184 AluY 311 + 14 306 116162 15 3 0 97 14 0 180 chain 5472 chr13 115169878 + 79186749 79186870 MLT1A0 366 - 212 338 190290 32 12 11 37 24 30 16 chain 34334 chr13 115169878 + 79201464 79201905 L1PA8A 6298 - 8 454 77158 110 5 6 314 0 4 12 chain 59549 chr13 115169878 + 79213494 79214139 L1PA2 6032 + 5386 6031 53080 645 chain 25278 chr13 115169878 + 79217640 79217935 AluSp 311 + 0 294 103326 29 1 0 265 chain 78809 chr13 115169878 + 79220936 79221922 LTR5B 1012 + 0 1012 44141 107 0 3 24 7 21 334 1 0 9 0 2 18 0 1 298 0 1 97 0 4 84 0 2 7 chain 26419 chr13 115169878 + 79230446 79230745 AluSp 311 + 10 310 98341 56 0 1 243 chain 18675 chr13 115169878 + 79238663 79239023 LTR19C 757 - 409 755 131016 17 33 22 115 31 26 59 21 21 24 1 0 17 2 0 7 1 5 7 0 1 25 chain 7664 chr13 115169878 + 79243678 79243814 MLT1B 390 + 234 372 173144 27 30 32 79 chain 188040 chr13 115169878 + 79276496 79278760 L1PA8 5853 + 3594 5850 20234 351 1 0 1064 2 0 84 0 1 470 1 0 44 2 0 79 4 3 50 2 1 19 1 0 90 chain 10079 chr13 115169878 + 79320097 79320231 THE1D 372 - 2 126 160184 87 10 0 37 chain 11643 chr13 115169878 + 79371660 79374402 L1MC2 1988 - 69 411 153727 51 9 15 12 2 0 7 4 0 39 2479 66 14 1 0 13 18 32 93 chain 7501 chr13 115169878 + 79388240 79388337 L1PA7 6471 + 6374 6465 174145 84 6 0 7 chain 23864 chr13 115169878 + 79396836 79397128 AluYk4 311 + 13 301 111112 113 3 0 108 6 5 62 chain 27648 chr13 115169878 + 79412212 79412538 L1PA7 6471 - 12 340 94213 145 0 1 117 0 1 64 chain 41029 chr13 115169878 + 79412538 79413074 L1PA6 6164 - 2 566 67859 6 2 0 276 0 38 198 16 8 38 chain 28619 chr13 115169878 + 79423982 79424287 AluYa8 305 + 0 305 90659 305 chain 530855 chr13 115169878 + 79429056 79435187 L1PA4 6152 - 9 6151 4104 141 0 1 1306 2 0 342 1 5 182 0 1 929 0 1 21 1 0 156 0 1 669 0 3 128 0 2 100 1 0 1112 0 3 6 3 0 62 0 1 168 0 1 801 chain 99409 chr13 115169878 + 79440026 79441350 L1P2 5180 + 2 1346 36922 148 1 0 97 1 0 25 1 2 8 2 1 225 1 0 7 2 1 271 1 0 5 1 0 141 0 25 48 1 2 20 0 3 53 0 3 65 8 2 192 chain 11486 chr13 115169878 + 79452819 79452946 L1PA4 6152 + 6025 6152 154350 127 chain 29993 chr13 115169878 + 79496693 79497103 MER57A1 433 - 8 433 84828 104 0 10 17 7 8 20 0 1 74 0 1 70 8 6 61 0 4 49 chain 97623 chr13 115169878 + 79497972 79499073 L1PA3long 6157 - 0 1109 37391 12 5 7 133 1 2 336 0 1 374 0 4 240 chain 65270 chr13 115169878 + 79499084 79499810 L1PA3long 6157 + 4290 5019 50434 462 0 1 259 0 2 5 chain 72944 chr13 115169878 + 79503120 79503931 L1PA4 6152 - 0 812 47048 155 0 1 656 chain 20789 chr13 115169878 + 79503931 79504161 L1PA4 6152 + 5105 5335 124651 230 chain 4127 chr13 115169878 + 79515759 79515820 MLT1C 463 + 368 428 205552 23 5 4 33 chain 286608 chr13 115169878 + 79521969 79525362 L1PA7 6471 - 19 3411 14253 432 1 2 401 0 3 39 8 1 464 0 1 160 1 0 328 1 0 789 10 9 160 0 2 372 2 4 225 chain 38349 chr13 115169878 + 79537325 79537842 MLT2A2 560 - 1 560 71653 51 0 1 7 1 0 87 0 11 63 0 32 9 1 0 6 0 1 111 12 11 169 chain 32200 chr13 115169878 + 79586760 79587125 L1PA4 6152 - 0 365 80521 365 chain 31435 chr13 115169878 + 79588646 79589069 MLT2A1 477 + 0 477 81756 113 2 1 5 0 1 20 1 2 26 1 5 212 5 54 38 chain 140526 chr13 115169878 + 79590611 79592176 L1PA4 6152 - 13 1578 26068 1565 chain 29563 chr13 115169878 + 79600156 79600552 MER1A 529 - 6 394 86366 61 6 8 84 6 0 22 5 0 57 0 1 155 chain 25002 chr13 115169878 + 79611745 79612050 L1PA6 6164 + 5849 6155 104768 154 7 8 144 chain 20939 chr13 115169878 + 79657240 79657480 L1PA3long 6157 + 5918 6156 124156 197 1 0 37 1 0 4 chain 29672 chr13 115169878 + 79661092 79661402 AluYa5 310 - 0 310 85946 310 chain 69832 chr13 115169878 + 79665311 79666090 L1PA4 6152 - 2110 2893 48391 476 1 4 31 0 1 271 chain 187203 chr13 115169878 + 79666090 79668180 L1PA4 6152 + 4058 6152 20317 1246 0 4 296 0 1 385 7 6 156 chain 59214 chr13 115169878 + 79681221 79681997 L1PA8 5853 + 5084 5853 53275 84 10 9 300 0 1 86 1 0 46 4 2 66 24 22 40 2 1 19 1 0 93 chain 33112 chr13 115169878 + 79684314 79684876 MLT2A1 477 + 0 477 79038 169 4 1 9 0 1 24 0 1 151 1 3 24 0 2 20 126 38 34 chain 81791 chr13 115169878 + 79688086 79689103 L1PA8 5853 + 4831 5853 42848 106 15 22 435 0 4 160 0 1 5 1 0 46 2 0 68 2 1 12 1 0 49 2 1 19 1 0 93 chain 107024 chr13 115169878 + 79692946 79694320 LTR12C 1709 - 0 1709 34965 84 1 0 66 1 0 179 0 2 150 11 4 92 1 48 101 0 278 240 0 1 18 1 2 92 10 24 27 0 1 171 1 2 5 1 0 122 chain 60461 chr13 115169878 + 79709929 79710665 L1PA7 6471 + 5734 6469 52602 425 0 1 153 9 10 33 4 2 20 1 0 91 chain 3735 chr13 115169878 + 79718917 79718958 MLT1H 522 - 15 56 211388 41 chain 92043 chr13 115169878 + 79746116 79747807 L1PB1 5432 - 5 1322 38964 4 1 0 5 1 0 14 1 0 13 5 4 17 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 15 1 0 38 29 27 48 6 4 6 4 0 14 1 0 10 1 0 20 349 11 392 1 0 6 0 2 75 3 0 297 1 0 164 0 1 56 chain 154986 chr13 115169878 + 79747872 79750078 L1PBa 3878 + 1615 3800 23981 326 9 6 191 0 1 136 0 1 103 0 1 290 0 3 34 6 9 318 33 18 44 11 7 36 51 31 24 0 8 19 2 0 369 9 27 40 3 0 39 0 4 15 2 1 21 2 0 10 42 33 13 1 0 7 chain 32627 chr13 115169878 + 79753618 79754460 LTR10F 562 - 0 562 79803 87 2 0 194 9 15 10 7 0 15 45 51 26 341 58 106 chain 27416 chr13 115169878 + 79754024 79754316 L1PA5 6144 + 5847 6139 94915 292 chain 39843 chr13 115169878 + 79796341 79796892 MLT2A2 560 - 0 560 69548 147 14 25 204 21 19 165 chain 20498 chr13 115169878 + 79809776 79810013 L1PA4 6152 - 1495 1732 125347 237 chain 132039 chr13 115169878 + 79810013 79811492 L1PA4 6152 + 4659 6143 27629 623 0 4 715 0 1 141 chain 14155 chr13 115169878 + 79836804 79837141 L1PB1 5432 + 5114 5430 144025 19 2 1 12 1 0 12 13 11 50 1 0 10 10 9 41 39 34 13 3 1 5 1 0 14 2 0 24 1 0 22 1 0 13 1 0 13 1 0 8 1 0 4 chain 30019 chr13 115169878 + 79848216 79848621 LTR7 482 + 1 477 84742 68 8 46 109 0 1 33 0 1 4 1 32 12 0 1 4 1 0 165 chain 299160 chr13 115169878 + 79848628 79852304 HERVH-int 3825 + 0 3825 13471 184 1 5 341 1 0 11 1 0 4 0 1 24 2 1 9 1 0 12 22 12 14 1 0 13 31 25 20 45 1 21 43 22 7 1 0 52 1 0 450 16 1 345 2 1 109 4 31 279 5 9 20 0 3 1052 0 2 39 0 210 268 0 2 225 chain 30316 chr13 115169878 + 79853547 79853951 LTR7 482 + 0 477 83868 69 8 46 109 0 1 33 0 32 129 12 14 44 chain 11812 chr13 115169878 + 79860562 79860761 Tigger1 2417 + 2206 2417 152977 32 14 13 60 6 8 17 7 18 63 chain 512445 chr13 115169878 + 79874208 79880198 L1PA5 6144 + 0 6137 5925 129 1 15 12 0 12 184 3 127 439 0 5 240 15 6 1139 7 0 5 0 2 10 1 0 851 1 0 151 0 4 170 1 2 1339 0 7 112 1 0 840 2 1 151 4 2 182 chain 13810 chr13 115169878 + 79967455 79967636 MER50 708 + 500 683 145223 130 1 0 27 1 4 22 chain 18219 chr13 115169878 + 79971566 79971795 AluSc8 310 + 38 263 132285 70 3 0 16 1 0 139 chain 16965 chr13 115169878 + 79982448 79982801 LTR47B 464 - 71 464 135686 18 1 0 9 12 11 4 1 0 72 42 43 25 0 1 62 7 38 22 12 23 49 5 4 12 chain 34192 chr13 115169878 + 80014852 80015310 MER1A 529 - 0 474 77360 64 8 9 72 0 2 277 8 21 29 chain 2980 chr13 115169878 + 80019877 80019910 LTR41 747 + 3 36 225444 33 chain 115399 chr13 115169878 + 80035720 80037110 L1PA8 5853 - 0 1396 32642 93 1 0 16 1 0 55 1 0 10 1 0 71 2 0 37 0 8 384 8 10 75 0 1 86 0 1 549 chain 97756 chr13 115169878 + 80047794 80048933 L1PA6 6164 - 2 1144 37349 329 0 1 544 0 2 266 chain 46888 chr13 115169878 + 80048933 80049478 L1PA6 6164 + 4455 5028 61155 95 0 29 64 1 0 385 chain 28989 chr13 115169878 + 80081402 80081708 AluYa5 310 - 5 310 89044 179 1 0 126 chain 38854 chr13 115169878 + 80082437 80082966 MER41A 554 - 0 554 70937 18 6 15 75 1 0 4 0 1 18 7 27 133 8 4 259 chain 29425 chr13 115169878 + 80083771 80084213 MLT2A1 477 - 13 477 86966 35 5 0 15 20 43 36 6 2 163 4 1 96 0 6 32 1 6 29 chain 4272 chr13 115169878 + 80084213 80084263 MER4B 649 - 599 649 203591 50 chain 5515 chr13 115169878 + 80084551 80084759 LTR49 580 - 0 202 189888 21 3 0 11 11 0 7 98 104 9 0 1 42 0 1 6 chain 9586 chr13 115169878 + 80106190 80106359 Tigger1 2417 - 2139 2312 162661 86 15 12 12 14 21 42 chain 103454 chr13 115169878 + 80147793 80148964 L1PA4 6152 + 4969 6143 35884 335 0 4 694 1 0 141 chain 477069 chr13 115169878 + 80150051 80156652 L1PA8A 6298 - 7 6262 7829 22 0 1 75 7 0 7 4 11 216 0 1 62 4 11 42 10 0 350 1 4 281 0 7 50 0 1 795 0 4 405 40 52 22 0 1 249 46 6 199 0 4 47 1 0 11 1 0 264 0 5 128 14 9 22 0 1 68 1 0 93 2 7 253 1 3 430 0 1 23 10 11 13 309 0 129 1 2 260 5 6 207 0 1 246 0 7 28 3 0 360 0 1 85 12 13 168 1 0 76 4 2 11 1 0 15 3 1 76 42 33 15 3 11 5 2 0 7 5 0 15 1 0 9 2 1 5 1 0 8 1 0 11 9 6 15 2 0 31 2 1 9 2 1 18 19 10 16 0 3 23 20 9 12 1 0 16 1 0 4 chain 97939 chr13 115169878 + 80161844 80163028 L1PA5 6144 - 1 2076 37297 8 7 0 168 15 909 608 0 3 107 0 1 271 chain 119576 chr13 115169878 + 80173456 80174858 LTR12C 1709 - 0 1709 31189 82 1 0 13 0 1 212 0 26 110 0 2 35 0 4 105 2 0 7 1 0 131 0 278 703 chain 4363 chr13 115169878 + 80175482 80175636 MER5B 177 + 0 154 202410 38 70 71 14 11 10 21 chain 4806 chr13 115169878 + 80176556 80176612 LTR32 486 - 430 486 197277 56 chain 331489 chr13 115169878 + 80181350 80185940 L1PB1 5432 - 14 4528 12147 14 1 0 13 1 0 21 1 0 20 27 22 20 24 12 16 7 6 33 10 9 11 2 1 50 5 23 9 1 0 14 12 7 14 131 0 12 0 4 162 0 10 102 0 1 187 1 0 16 2 0 142 0 1 8 3 8 89 0 2 103 0 1 49 0 2 62 5 0 10 0 5 129 18 16 17 0 3 6 6 5 225 10 12 4 0 1 83 1 0 13 0 2 68 0 1 11 0 6 141 0 1 123 0 1 4 1 0 118 0 12 111 2 0 194 2 1 237 0 5 47 6 7 23 0 1 83 1 0 37 0 4 85 3 1 117 1 2 57 0 2 23 1 0 6 10 11 156 0 2 500 0 8 399 9 10 66 9 8 13 0 1 4 chain 3711 chr13 115169878 + 80205620 80205660 MLT1F-int 966 + 701 741 211790 40 chain 111089 chr13 115169878 + 80213376 80214762 L1PA7 6471 - 2 1451 33910 11 0 2 58 1 19 242 1 0 124 1 3 70 10 15 230 6 14 180 0 29 452 chain 26544 chr13 115169878 + 80274531 80274809 AluYb8 318 - 2 280 97867 278 chain 84772 chr13 115169878 + 80330478 80331584 THE1B-int 1605 - 454 1588 41606 130 9 11 48 18 19 486 0 25 415 chain 16784 chr13 115169878 + 80383032 80383288 L1PB4 2604 + 2310 2571 136149 73 2 0 28 0 1 88 3 6 7 0 4 30 13 12 12 chain 562767 chr13 115169878 + 80391190 80397345 L1PA3long 6157 - 0 6149 276 147 0 1 5310 7 0 691 chain 59517 chr13 115169878 + 80397728 80398566 L1PA14 3548 - 520 1359 53092 21 3 1 6 2 0 47 2 0 10 2 5 190 22 19 41 1 0 59 1 4 45 0 1 41 2 1 62 0 4 21 0 1 260 chain 158644 chr13 115169878 + 80401269 80403056 L1PA5 6144 + 4342 6128 23513 679 1 0 362 1 0 606 0 1 138 chain 49442 chr13 115169878 + 80410493 80411072 L1PA8A 6298 + 5712 6291 59427 579 chain 559222 chr13 115169878 + 80413803 80419952 L1PA3long 6157 + 6 6155 405 477 1 0 4 5 6 3211 1 0 2199 0 1 251 chain 22156 chr13 115169878 + 80431645 80431892 L1PA6 6164 - 354 601 119568 247 chain 30890 chr13 115169878 + 80431899 80432258 L1PA6 6164 + 5802 6161 82700 359 chain 26362 chr13 115169878 + 80432268 80432639 LTR7 482 + 0 477 98565 23 15 38 37 0 51 4 1 0 7 1 0 5 0 1 58 0 1 5 0 31 46 0 1 169 chain 4938 chr13 115169878 + 80432807 80432867 MER63D 473 + 68 129 195819 27 0 1 33 chain 53895 chr13 115169878 + 80434169 80434932 MER4E1 777 - 0 777 56430 20 0 2 48 23 0 6 0 23 130 19 10 41 0 4 14 0 4 9 1 2 14 0 2 120 0 4 81 10 18 179 1 0 29 1 0 17 chain 519386 chr13 115169878 + 80461176 80467371 L1PA6 6164 + 7 6162 5222 121 26 0 109 0 2 15 0 1 4 1 0 259 0 2 47 1 0 471 0 1 1253 6 5 29 2 3 860 0 1 81 1 0 319 27 0 471 1 2 269 0 1 783 0 1 125 4 3 67 0 4 261 0 2 252 0 1 330 chain 2967 chr13 115169878 + 80476554 80476588 U2 167 + 0 34 225712 34 chain 275970 chr13 115169878 + 80495770 80499647 L1PA10 4194 - 34 3881 14874 10 1 0 34 3 0 14 0 1 19 1 0 87 0 1 165 0 1 151 8 0 78 0 1 134 0 1 215 8 5 10 2 1 101 6 0 114 0 1 27 12 13 13 1 0 145 25 1 67 0 1 42 4 5 22 0 4 64 4 3 311 0 6 176 1 0 4 0 1 313 0 1 37 1 0 51 2 0 7 7 9 53 0 1 33 7 25 557 0 3 79 6 5 29 1 0 40 0 4 4 4 0 37 18 22 208 2 0 18 7 8 79 1 0 4 1 0 80 43 0 10 5 31 5 1 0 8 5 4 11 2 0 22 chain 24571 chr13 115169878 + 80508686 80509068 L1PA8 5853 + 5464 5853 107129 29 5 6 40 3 5 20 1 0 41 7 5 41 0 7 24 10 8 50 2 1 24 1 0 44 0 4 40 chain 459595 chr13 115169878 + 80525205 80530596 L1PA6 6164 + 744 6162 8417 1581 1 2 648 0 1 197 6 7 9 0 1 942 3 5 220 0 8 441 0 6 503 1 0 6 0 6 9 0 1 496 0 1 328 chain 11907 chr13 115169878 + 80531721 80531858 L1PA7 6471 + 0 137 152568 137 chain 515156 chr13 115169878 + 80531947 80538749 L1PA7 6471 + 0 6468 5651 214 1 5 193 29 15 555 0 35 744 336 2 16 4 5 173 2 0 92 0 2 83 0 2 461 1 0 44 13 6 108 0 4 96 8 10 31 5 0 313 11 12 11 0 1 270 1 0 333 1 0 134 0 3 183 18 2 48 5 0 265 0 1 81 9 0 21 1 0 4 0 1 426 8 9 161 0 1 71 0 4 115 0 1 254 0 3 97 3 0 289 0 2 449 4 0 7 chain 481787 chr13 115169878 + 80549069 80555513 L1PA6 6164 + 0 6162 7663 169 20 21 167 82 55 37 19 0 113 80 5 7 0 2 117 0 15 35 25 4 53 0 17 114 0 4 90 1 0 248 0 9 170 1 0 119 5 7 34 0 1 64 0 1 67 1 3 481 193 0 94 3 2 92 4 3 46 15 0 8 0 15 688 2 1 6 0 2 37 6 2 15 0 4 724 1 0 7 0 1 178 0 1 207 0 4 283 2 0 849 0 1 655 2 0 8 chain 7620 chr13 115169878 + 80551455 80551553 L1PA6 6164 + 2136 2229 173409 8 5 0 85 chain 36078 chr13 115169878 + 80571925 80572343 L1PA5 6144 - 16 434 74786 418 chain 23135 chr13 115169878 + 80636036 80636417 MLT2A1 477 - 92 477 114972 55 11 10 114 84 89 117 chain 250459 chr13 115169878 + 80636417 80639456 HERVL-int 5654 - 0 3047 16214 219 0 1 88 2 4 360 0 1 78 22 25 286 10 0 81 14 13 225 0 1 178 0 1 344 0 1 813 0 1 239 0 1 5 2 1 36 0 8 37 chain 17985 chr13 115169878 + 80639866 80640080 HERVL-int 5654 + 2756 2970 132906 35 1 0 146 0 1 32 chain 291160 chr13 115169878 + 80663686 80667675 L1PA10 4194 - 33 3997 13947 11 1 0 33 4 1 197 6 12 170 0 1 10 0 4 16 0 1 7 2 1 349 0 6 155 8 1 100 0 1 95 11 12 5 0 1 289 2 3 68 1 2 60 1 0 283 5 6 218 1 9 43 0 2 19 0 1 112 0 1 4 2 1 116 0 3 20 1 3 206 37 38 58 0 1 427 0 1 494 4 3 74 21 12 15 1 0 10 1 0 7 1 0 7 1 0 23 2 0 20 1 0 5 39 14 8 1 0 15 2 0 21 1 0 5 6 5 8 2 0 12 10 6 7 2 0 10 chain 28809 chr13 115169878 + 80678328 80678631 AluYh9 303 - 0 303 89852 303 chain 4559 chr13 115169878 + 80697437 80697491 MER1B 344 + 289 343 200113 54 chain 412176 chr13 115169878 + 80726040 80730553 L1PA2 6032 + 4 6030 9741 1721 0 5 19 0 1504 973 1 5 1799 chain 35313 chr13 115169878 + 80757645 80758088 LTR7 482 + 0 476 75777 266 0 31 122 12 14 43 chain 290248 chr13 115169878 + 80758096 80761854 HERVH-int 3825 + 0 3825 14006 499 0 4 29 5 0 35 5 4 9 1 0 24 28 0 15 35 30 7 1 0 42 2 1 80 1 0 113 100 0 538 10 0 142 5 0 207 0 1 19 3 15 272 12 17 758 17 10 247 10 220 487 chain 33939 chr13 115169878 + 80763666 80764097 LTR7 482 + 0 465 77713 225 0 1 40 0 31 122 12 14 32 chain 59326 chr13 115169878 + 80766202 80766935 LTR17 781 + 0 768 53209 235 11 24 34 0 1 33 1 0 383 9 31 27 chain 22038 chr13 115169878 + 80780341 80780623 AluSp 311 + 8 292 120076 251 4 6 27 chain 5812 chr13 115169878 + 80802971 80803149 MER2 342 - 6 186 187020 24 0 1 9 90 91 55 chain 36480 chr13 115169878 + 80828470 80828887 L1PA5 6144 - 552 973 74265 138 1 2 64 0 3 214 chain 47707 chr13 115169878 + 80828887 80829434 L1PA5 6144 + 5596 6144 60689 217 0 1 330 chain 176425 chr13 115169878 + 80835278 80837603 L1PBa1 4058 - 1676 4048 21312 563 0 4 9 0 6 138 1 0 471 0 1 222 1 2 114 0 1 54 0 2 165 10 9 29 1 2 158 3 1 10 7 16 232 0 1 7 10 9 49 0 30 20 13 10 11 1 0 26 chain 50220 chr13 115169878 + 80837648 80838289 THE1D-int 1627 - 939 1604 58852 205 0 1 254 0 23 88 0 1 76 1 0 17 chain 22302 chr13 115169878 + 80842092 80842358 AluSp 311 + 21 287 118905 266 chain 24455 chr13 115169878 + 80842837 80843137 AluY 311 + 0 295 107777 6 0 1 70 8 1 54 0 1 162 chain 4715 chr13 115169878 + 80852317 80852372 LTR12C 1709 - 991 1046 198335 55 chain 2907 chr13 115169878 + 80852403 80852435 LTR12C 1709 - 840 872 226926 32 chain 14064 chr13 115169878 + 80852523 80852698 LTR12C 1709 - 601 776 144341 175 chain 23849 chr13 115169878 + 80902111 80902419 AluSp 311 - 5 311 111188 8 5 0 141 6 9 6 3 0 48 0 3 91 chain 101331 chr13 115169878 + 80924828 80926104 L1PA8 5853 - 7 1285 36437 37 0 1 48 1 0 19 2 1 47 1 0 14 1 0 6 1 3 60 2 0 45 2 1 549 5 7 7 2 0 37 6 12 196 0 1 10 1 0 177 chain 119306 chr13 115169878 + 80929498 80930905 LTR12C 1709 + 0 1709 31290 500 5 15 136 0 288 135 0 2 36 1 0 112 0 4 54 2 1 426 chain 15269 chr13 115169878 + 80939907 80940204 MER4D 903 - 8 306 140576 57 57 58 45 0 18 57 25 7 56 chain 7762 chr13 115169878 + 80943561 80943658 U6 107 - 1 96 172527 49 1 0 24 1 0 22 chain 6891 chr13 115169878 + 80959312 80959417 MLT1B 390 - 4 110 178269 67 10 11 28 chain 28262 chr13 115169878 + 80971682 80972087 LTR3B 427 + 11 412 92069 94 1 0 45 12 11 140 9 6 20 11 8 11 1 0 21 0 5 40 chain 27267 chr13 115169878 + 80974064 80974473 LTR3B 427 + 13 427 95380 67 0 6 70 6 5 117 1 2 21 3 0 26 35 37 63 chain 21825 chr13 115169878 + 80979848 80980214 L1PA14 3548 - 3097 3458 120923 152 6 4 27 10 8 25 2 1 13 5 4 25 10 16 28 3 0 6 3 1 51 chain 27916 chr13 115169878 + 80997395 80997767 L1PA8 5853 - 0 368 93296 92 0 2 18 2 1 50 1 0 11 2 1 70 2 0 44 1 0 79 chain 14143 chr13 115169878 + 81005603 81005808 MER50B 698 - 7 210 144063 83 6 7 7 1 0 50 1 0 24 1 0 32 chain 25952 chr13 115169878 + 81008754 81009087 L1PA7 6471 - 1 334 100196 12 0 1 134 9 3 6 0 2 129 0 3 43 chain 141581 chr13 115169878 + 81040591 81042301 L1PA6 6164 + 4446 6161 25888 589 1 0 280 1 5 217 6 7 250 0 2 116 1 0 223 0 1 16 1 0 9 chain 113606 chr13 115169878 + 81063877 81065261 LTR12C 1709 - 0 1709 33201 84 5 4 393 0 4 31 0 207 149 1 0 9 3 123 213 6 1 249 0 1 241 chain 513497 chr13 115169878 + 81091000 81097115 L1PA6 6164 + 0 6157 5835 212 8 1 158 25 32 87 11 20 162 0 5 1598 1 0 54 1 2 127 0 2 242 0 3 25 5 24 435 0 1 353 1 2 151 1 0 7 1 0 230 3 0 481 0 1 228 0 1 651 1 5 125 0 1 731 chain 29178 chr13 115169878 + 81104398 81104809 MER75 514 + 46 463 88157 58 2 3 144 5 7 30 0 3 34 0 9 20 9 0 109 chain 397435 chr13 115169878 + 81111464 81116944 L1PA7 6471 - 3 5548 10182 7 4 0 141 6 0 6 0 6 689 4 7 326 0 1 38 8 6 70 0 1 67 0 23 125 1 0 283 0 4 101 620 0 298 10 0 8 0 1 340 0 1 95 0 1 211 1 0 41 0 1 73 1 0 864 1 2 854 1 9 20 12 671 154 chain 52678 chr13 115169878 + 81113361 81113960 L1PA4 6152 - 9 609 57199 250 0 1 349 chain 358576 chr13 115169878 + 81152577 81158000 L1PB1 5432 + 90 5424 11388 311 1 0 86 0 1 266 0 1 4 10 13 59 10 11 161 0 3 280 5 4 105 1 0 7 2 0 5 24 11 183 29 34 208 6 8 88 0 1 61 0 1 174 0 10 305 1 7 35 0 1 71 21 22 136 0 3 183 26 37 693 0 2 13 0 15 15 1 3 140 0 14 81 0 1 156 0 317 186 22 0 181 0 1 179 0 1 95 5 9 14 430 1 11 1 0 24 1 0 9 16 11 11 2 0 51 42 40 20 1 0 16 3 0 7 14 5 19 17 19 24 1 0 21 2 0 13 1 0 16 1 0 4 chain 18479 chr13 115169878 + 81162182 81162532 MLT2A2 560 + 18 540 131562 147 64 65 61 33 204 45 chain 11710 chr13 115169878 + 81180752 81180903 AluSq10 312 - 18 174 153422 48 5 10 98 chain 81847 chr13 115169878 + 81232037 81233365 LTR12D 1347 - 0 1347 42823 97 1 34 134 1 0 33 1 0 21 36 9 93 5 6 205 0 17 49 24 28 13 5 73 174 7 8 20 97 26 81 60 55 171 chain 5244 chr13 115169878 + 81233376 81233462 LTR14B 630 - 356 630 192584 37 7 195 42 chain 22237 chr13 115169878 + 81238575 81238851 AluSc 308 + 8 285 119178 85 1 2 190 chain 188917 chr13 115169878 + 81248034 81250173 L1PA5 6144 + 3976 6138 20155 655 0 5 661 0 4 687 0 14 136 chain 37624 chr13 115169878 + 81252200 81252736 L1MA1 4479 - 3717 4250 72656 122 1 0 4 0 5 49 13 0 257 0 2 37 8 6 9 0 2 12 1 5 23 chain 484124 chr13 115169878 + 81263731 81269880 L1PA7 6471 + 323 6470 7584 44 9 10 35 25 2 59 0 1 642 48 0 38 0 1 55 0 4 28 0 1 25 14 10 498 2 1 249 0 1 49 0 6 554 1 2 56 0 1 4 3 5 51 0 26 320 0 4 127 0 1 250 0 2 120 1 2 315 0 3 56 0 1 19 1 2 308 0 3 11 2 0 282 2 0 64 0 4 110 0 1 232 1 0 351 0 1 153 0 3 88 0 3 95 0 3 359 0 1 62 0 2 178 1 0 7 0 1 145 chain 436859 chr13 115169878 + 81273349 81278463 L1PA5 6144 - 0 5141 9134 160 7 0 11 11 12 593 0 1 88 0 4 1060 4 1 282 1 2 360 0 1 201 0 5 124 0 12 156 0 8 678 0 3 544 0 1 414 1 0 5 0 1 414 chain 47815 chr13 115169878 + 81278919 81279507 HERVE-int 4064 + 2118 2703 60613 81 19 16 488 chain 48136 chr13 115169878 + 81280572 81281153 HERVE-int 4064 + 2118 2696 60376 93 3 0 485 chain 48026 chr13 115169878 + 81306287 81306823 L1PA3long 6157 - 1 537 60462 536 chain 18665 chr13 115169878 + 81320696 81320902 L1P1 4361 - 1116 1322 131041 206 chain 26063 chr13 115169878 + 81332540 81332897 LTR12D 1347 + 405 810 99780 131 0 31 111 25 0 15 0 18 33 0 24 42 chain 28357 chr13 115169878 + 81349923 81350241 L1PA5 6144 - 12 331 91741 142 0 1 176 chain 10970 chr13 115169878 + 81363427 81363552 L1PA5 6144 - 3 133 156318 39 0 5 86 chain 155228 chr13 115169878 + 81383117 81385151 L1PA7 6471 - 2 2812 23957 254 113 909 667 1 0 32 0 1 266 0 1 304 18 12 13 7 6 137 3 0 5 11 0 203 chain 8826 chr13 115169878 + 81406329 81406467 L1M1 2793 + 2561 2695 166515 63 6 5 10 1 0 35 1 0 11 1 0 10 chain 21832 chr13 115169878 + 81420223 81420530 THE1A 353 + 0 302 120884 84 0 1 4 1 0 16 6 5 124 1 0 60 3 0 8 chain 90720 chr13 115169878 + 81437711 81438749 L1PA4 6152 - 12 1069 39384 142 1 20 86 1 0 597 0 1 211 chain 5104 chr13 115169878 + 81443937 81443995 MER41A 554 - 91 149 194051 58 chain 103354 chr13 115169878 + 81470839 81472056 HERV9-int 5642 + 3608 4824 35909 407 5 3 140 0 1 665 chain 15550 chr13 115169878 + 81483152 81483499 MSTA 426 + 14 408 139730 75 32 56 9 0 6 41 68 66 33 15 34 74 chain 76744 chr13 115169878 + 81485807 81486755 L1PA7 6471 - 1 945 45107 146 1 0 5 5 6 85 1 3 166 16 9 339 3 1 86 0 3 95 chain 52957 chr13 115169878 + 81489389 81490109 L1PREC2 3366 + 2093 2806 57043 157 0 4 57 7 1 167 3 0 238 2 0 35 2 0 45 0 2 7 chain 170033 chr13 115169878 + 81490729 81492578 L1PA2 6032 - 5 1852 22046 8 2 0 1839 chain 11701 chr13 115169878 + 81535871 81536066 L1MA1 4479 - 289 468 153460 18 8 0 16 4 1 4 1 0 9 1 0 34 2 0 30 1 0 67 chain 387463 chr13 115169878 + 81556264 81560674 L1PA5 6144 - 6 4417 10535 245 0 1 864 10 6 728 1 0 414 1 0 378 1 0 848 1 0 348 1 0 234 0 9 336 chain 18073 chr13 115169878 + 81572918 81573124 LTR12C 1709 - 1499 1706 132668 41 0 1 165 chain 4101 chr13 115169878 + 81573303 81573359 MER30 238 + 184 237 205925 14 3 0 39 chain 27194 chr13 115169878 + 81573501 81573816 LTR12C 1709 + 1118 1437 95613 106 0 4 209 chain 15393 chr13 115169878 + 81582364 81582582 THE1D-int 1627 + 15 234 140223 21 11 6 135 2 8 49 chain 3098 chr13 115169878 + 81602340 81602374 L1M1 2793 - 487 521 222937 34 chain 27067 chr13 115169878 + 81603820 81604200 L1M1 2793 - 1641 2014 96044 6 0 1 142 1 0 102 1 0 5 3 1 56 1 0 8 2 0 32 1 0 20 chain 2846 chr13 115169878 + 81632970 81633019 L1MC5 759 + 598 654 227924 13 6 13 30 chain 20869 chr13 115169878 + 81637080 81637521 THE1B 368 - 0 368 124398 25 30 38 40 85 0 23 1 0 12 6 5 11 17 24 21 1 0 169 chain 39884 chr13 115169878 + 81637553 81638055 MER9a3 513 + 1 509 69480 12 0 1 20 2 3 46 5 8 354 0 2 12 1 0 50 chain 554633 chr13 115169878 + 81638228 81644366 L1PA3long 6157 - 0 6152 869 2512 0 2 428 0 1 1413 0 1 317 0 1 317 0 3 111 0 2 805 0 4 235 chain 15996 chr13 115169878 + 81650258 81650436 L1PA3long 6157 - 1005 1183 136826 178 chain 89684 chr13 115169878 + 81650436 81651429 L1PA3long 6157 + 5160 6152 39751 855 1 0 137 chain 19075 chr13 115169878 + 81651921 81652287 MSTA 426 - 23 426 129891 41 1 0 30 17 35 24 1 0 17 22 20 17 3 5 8 4 0 58 20 44 36 1 2 66 chain 2824 chr13 115169878 + 81658491 81658524 L1MCb 1641 - 870 903 228314 33 chain 26394 chr13 115169878 + 81661097 81661380 AluY 311 + 16 300 98435 116 0 1 167 chain 37456 chr13 115169878 + 81663032 81663484 MER4A1 472 - 11 472 72883 83 0 1 115 1 2 220 0 7 33 chain 2680 chr13 115169878 + 81664731 81664761 MER4A1 472 - 35 65 230439 30 chain 3764 chr13 115169878 + 81664761 81664850 MER4A1 472 - 102 155 210906 10 36 0 43 chain 24148 chr13 115169878 + 81670378 81670671 AluSp 311 + 14 307 109481 293 chain 17566 chr13 115169878 + 81676164 81676375 SVA_F 1814 - 617 1072 134081 64 0 1 4 0 243 143 chain 67523 chr13 115169878 + 81676376 81677138 SVA_D 2077 + 1110 2077 49435 77 0 86 30 0 98 522 0 20 87 0 1 46 chain 21247 chr13 115169878 + 81704590 81704934 THE1B 368 + 0 356 123032 15 2 0 32 5 6 55 0 4 57 1 0 29 36 46 112 chain 48783 chr13 115169878 + 81714820 81715427 PABL_A 660 + 0 620 59887 56 0 4 209 0 13 263 16 12 63 chain 2688 chr13 115169878 + 81720849 81720958 SVA_F 1814 - 717 1420 230367 23 39 0 8 6 7 15 0 632 18 chain 3270 chr13 115169878 + 81738008 81738048 THE1B 368 - 328 368 219606 40 chain 29182 chr13 115169878 + 81747253 81747564 AluYa5 310 - 0 310 88141 184 1 0 126 chain 31993 chr13 115169878 + 81758658 81759199 MER4B 649 + 0 572 80878 26 1 0 20 11 14 52 2 0 5 2 4 14 3 41 20 3 0 166 0 9 47 51 38 87 12 5 6 0 5 13 chain 17019 chr13 115169878 + 81779739 81780055 THE1C 375 + 0 335 135543 59 8 23 9 14 0 7 24 45 36 23 20 136 chain 82897 chr13 115169878 + 81813496 81814428 L1PA4 6152 - 13 945 42380 932 chain 22270 chr13 115169878 + 81814433 81814672 L1PA4 6152 + 4935 5174 119032 239 chain 4740 chr13 115169878 + 81839895 81839951 U6 107 + 14 70 198011 56 chain 67319 chr13 115169878 + 81849402 81850380 MER11B 1079 + 0 983 49522 357 1 3 69 1 0 34 1 0 34 0 1 82 18 18 24 0 9 87 1 0 22 46 38 19 5 6 22 0 1 41 0 1 16 3 4 95 chain 34621 chr13 115169878 + 81902406 81902864 L1PA8A 6298 - 7 477 76724 9 9 0 6 0 9 68 0 9 184 0 2 23 1 2 158 chain 118188 chr13 115169878 + 81913926 81915470 LTR12C 1709 - 0 1709 31731 51 4 5 208 102 0 195 14 0 22 0 4 106 3 1 5 1 0 98 0 278 440 0 1 295 chain 501819 chr13 115169878 + 81936395 81943090 L1PA7 6471 + 6 6454 6736 80 0 18 126 0 1 12 0 1 162 1 0 6 10 0 61 1 0 98 3 0 48 1 2 64 0 1 56 9 14 94 0 1 401 1 20 679 5 4 186 0 1 497 0 2 45 0 1 7 2 1 362 0 1 38 1 5 50 308 0 261 0 1 71 3 2 36 2 1 90 6 7 393 1 0 645 60 64 51 0 1 188 1 0 585 0 1 73 1 0 14 1 0 4 0 1 27 2 7 27 0 3 260 10 17 175 0 1 43 0 2 106 1 2 144 chain 64630 chr13 115169878 + 81953972 81954724 L1PA5 6144 + 5393 6144 50735 733 1 0 18 chain 16182 chr13 115169878 + 82007809 82008113 THE1D 372 - 1 294 137814 147 79 64 28 5 9 45 chain 30345 chr13 115169878 + 82025510 82025827 AluYb8 318 + 0 317 83787 317 chain 496177 chr13 115169878 + 82033745 82039329 L1PA4 6152 - 1 6146 7059 850 0 1 223 0 17 225 1 16 1208 0 1 619 0 1 1381 0 1 372 1 0 435 0 1 177 0 525 92 chain 24254 chr13 115169878 + 82073755 82074046 AluSq10 312 - 20 312 108920 9 0 1 282 chain 16001 chr13 115169878 + 82089827 82090084 LTR9B 643 - 81 336 138346 64 1 0 4 1 2 41 32 30 114 chain 120475 chr13 115169878 + 82091182 82093601 HUERS-P3b-int 2065 - 13 2052 30880 13 35 8 89 2 1 31 33 6 22 4 0 38 32 29 14 2 0 72 3 1 40 12 10 41 1 0 23 1 0 10 7 5 78 8 6 44 1 0 85 0 1 164 0 1 360 5 4 14 615 292 207 1 0 4 0 1 14 9 10 213 0 7 32 4 13 36 chain 12831 chr13 115169878 + 82096735 82096917 LTR9B 643 - 0 180 148923 40 17 15 125 chain 73321 chr13 115169878 + 82098728 82099779 MER11A 1151 + 0 1151 46874 56 1 0 11 0 99 109 4 1 13 8 5 94 0 1 51 6 7 89 0 7 16 1 0 114 10 14 109 40 14 24 5 28 225 1 0 64 chain 2183 chr13 115169878 + 82099435 82099458 MER11A 1151 + 836 859 236809 23 chain 27339 chr13 115169878 + 82111418 82111706 AluYa5 310 - 10 298 95146 288 chain 183609 chr13 115169878 + 82132953 82134973 L1PA3long 6157 - 0 2014 20618 259 1 0 83 4 0 454 2 1 1217 chain 51924 chr13 115169878 + 82134974 82135557 L1PA3long 6157 + 3565 4153 57667 430 0 5 153 chain 19990 chr13 115169878 + 82148149 82148357 AluYb8 318 - 12 220 127171 208 chain 271702 chr13 115169878 + 82201241 82204610 L1PA7 6471 - 14 3407 15099 78 6 7 412 9 4 336 2 5 630 1 2 34 1 0 141 0 4 105 0 1 348 0 6 42 0 1 43 0 1 247 0 6 7 6 3 130 7 19 104 7 4 496 0 12 9 13 1 155 chain 156491 chr13 115169878 + 82204630 82206537 L1PA7 6471 + 1124 3053 23799 89 0 15 133 1 0 17 8 11 116 1 2 917 0 3 102 0 1 109 0 2 60 1 0 168 2 1 183 chain 292000 chr13 115169878 + 82303435 82307128 L1PA7 6471 - 8 3706 13902 6 3 0 131 5 8 5 3 0 125 0 3 212 0 1 268 15 17 58 1 2 6 1 0 288 1 0 55 2 1 43 0 2 35 0 3 97 9 3 10 1 0 269 0 1 714 0 1 89 14 9 230 7 8 315 4 7 334 0 1 216 0 4 121 chain 442772 chr13 115169878 + 82322349 82327326 L1PA4 6152 + 1158 6148 8966 78 1 0 605 0 5 85 0 1 175 0 3 723 0 1 1654 0 2 792 0 4 823 0 1 26 3 0 12 chain 71259 chr13 115169878 + 82360309 82361249 L1PA8 5853 - 1450 2424 47824 109 7 15 294 0 1 248 0 3 16 0 1 36 0 1 11 12 18 15 0 15 31 1 0 160 chain 112203 chr13 115169878 + 82361275 82362720 L1PA8 5853 + 4433 5853 33609 554 18 12 7 13 0 5 0 1 169 0 1 12 5 1 137 0 1 13 1 3 215 1 0 44 2 0 74 1 0 12 8 7 39 2 1 19 1 0 93 chain 16832 chr13 115169878 + 82377669 82377870 L1PA5 6144 + 5930 6131 136036 201 chain 15154 chr13 115169878 + 82404196 82404537 L1PB1 5432 + 5108 5420 140901 6 1 0 24 1 0 9 27 20 70 1 0 44 2 1 14 1 0 4 60 46 24 1 0 21 1 0 13 1 0 16 chain 27527 chr13 115169878 + 82421509 82421816 AluYf5 307 - 0 307 94585 307 chain 182350 chr13 115169878 + 82434788 82436849 L1PA5 6144 + 4072 6140 20752 60 0 1 727 0 1 160 0 1 275 0 4 839 chain 27647 chr13 115169878 + 82440229 82440626 LTR7 482 + 0 469 94218 68 9 47 109 9 10 30 0 31 124 12 14 36 chain 282346 chr13 115169878 + 82440641 82444354 HERVH-int 3825 + 0 3825 14514 332 1 0 201 1 0 37 12 10 25 0 52 22 126 0 19 2 1 76 0 4 457 21 6 189 9 0 24 0 2 13 1 0 46 2 1 262 0 1 129 1 0 4 0 1 135 49 54 278 7 0 739 8 218 160 0 2 325 chain 27059 chr13 115169878 + 82446157 82446566 LTR7 482 + 0 482 96081 68 9 47 93 20 53 158 16 18 45 chain 22848 chr13 115169878 + 82484953 82485245 AluY 311 + 0 288 116351 47 2 0 66 1 4 15 2 0 61 3 0 95 chain 84180 chr13 115169878 + 82507240 82508353 L1PA8A 6298 + 5167 6290 41832 327 0 6 59 1 0 113 1 0 4 1 2 69 0 1 428 7 0 7 3 10 10 0 3 56 5 6 22 chain 19680 chr13 115169878 + 82513015 82513310 L1P3 4156 - 20 308 128161 23 9 6 110 16 14 7 2 0 128 chain 8067 chr13 115169878 + 82513318 82513421 L1PA8A 6298 + 6167 6272 170663 18 1 3 84 chain 81559 chr13 115169878 + 82526458 82527357 L1PA3long 6157 - 598 1502 42950 245 0 4 535 0 1 119 chain 54992 chr13 115169878 + 82527363 82527966 L1PA3long 6157 + 5554 6157 55711 603 chain 65601 chr13 115169878 + 82558215 82558974 LTR17 781 - 0 780 50294 27 0 22 405 1 0 326 chain 32284 chr13 115169878 + 82559211 82559615 L1PA6 6164 - 428 838 80391 36 0 2 196 0 1 132 9 12 31 chain 34844 chr13 115169878 + 82559615 82560027 L1PA6 6164 + 5745 6158 76413 86 0 1 326 chain 3629 chr13 115169878 + 82564543 82564589 MADE1 96 + 50 96 213174 46 chain 16599 chr13 115169878 + 82605336 82605544 L1PA5 6144 - 12 221 136673 133 4 5 71 chain 29450 chr13 115169878 + 82613314 82613623 AluYa5 310 - 1 310 86844 309 chain 152068 chr13 115169878 + 82613623 82615569 MER61-int 3695 - 1014 2970 24329 67 4 0 227 0 1 21 0 3 172 0 5 30 32 32 175 0 2 161 1 0 4 0 1 111 1 2 415 0 1 191 0 1 334 chain 6606 chr13 115169878 + 82616336 82616430 L1PA15-16 3068 - 2178 2273 180415 57 6 7 31 chain 552425 chr13 115169878 + 82619484 82625513 L1PA2 6032 + 0 6032 1142 256 1 0 5610 5 0 7 0 5 134 0 6 9 2 0 5 chain 20603 chr13 115169878 + 82630285 82630520 L1PA4 6152 + 5861 6096 125284 235 chain 4514 chr13 115169878 + 82630520 82630571 L1PA4 6152 + 6100 6151 200624 51 chain 29451 chr13 115169878 + 82631139 82631521 MLT2A1 477 - 92 477 86835 181 2 0 30 1 5 26 0 1 142 chain 6070 chr13 115169878 + 82649635 82649771 Tigger7 736 + 69 216 184656 53 17 17 12 23 34 31 chain 18901 chr13 115169878 + 82667290 82667538 AluSg4 309 + 10 263 130363 29 0 4 56 0 1 34 10 7 7 0 3 112 chain 405273 chr13 115169878 + 82684774 82689376 L1PA4 6152 + 1126 6152 9935 549 1 427 1069 4 1 31 0 1 357 0 1 1103 1 0 1487 chain 26432 chr13 115169878 + 82714146 82714436 L1PA4 6152 - 500 790 98300 290 chain 37777 chr13 115169878 + 82714436 82714881 L1PA4 6152 + 5689 6140 72448 281 0 5 74 0 1 90 chain 104794 chr13 115169878 + 82738359 82739650 LTR12C 1709 - 0 1709 35548 87 1 0 80 0 102 49 0 1 108 0 1 51 13 6 91 0 47 98 0 278 246 3 0 464 chain 16563 chr13 115169878 + 82770017 82770310 L1MA3 4352 + 3882 4152 136758 208 67 44 18 chain 550005 chr13 115169878 + 82803153 82809287 L1PA3long 6157 + 6 6157 1445 122 1 15 11 14 1 932 0 1 60 0 6 217 0 1 786 1 0 928 5 6 96 0 1 25 0 1 1053 0 3 1601 7 10 275 chain 22809 chr13 115169878 + 82832670 82832968 LTR12C 1709 + 760 1147 116535 59 0 40 131 0 2 92 1 48 15 chain 3067 chr13 115169878 + 82832993 82833028 LTR12C 1709 + 1051 1086 223618 35 chain 1823 chr13 115169878 + 82833046 82833110 LTR12C 1709 + 703 767 165586 64 chain 2161 chr13 115169878 + 82833156 82833180 LTR12C 1709 + 1013 1037 237057 24 chain 17595 chr13 115169878 + 82875865 82876206 THE1C 375 - 56 373 134011 77 81 57 99 9 10 60 2 1 13 chain 30558 chr13 115169878 + 82889211 82889529 AluYb8 318 + 0 318 83302 318 chain 5347 chr13 115169878 + 82890907 82890971 L1MC3 1789 - 626 690 191567 64 chain 72718 chr13 115169878 + 82891325 82892318 MER11A 1151 - 8 1151 47158 41 1 0 118 0 1 16 1 0 42 0 9 33 17 48 88 0 4 58 0 1 140 6 7 93 0 1 27 1 2 120 4 0 7 1 18 14 1 0 79 9 1 21 0 99 55 chain 12976 chr13 115169878 + 82905804 82905978 L1PA3long 6157 - 0 176 148329 43 0 1 15 0 1 79 7 0 8 4 11 18 chain 22025 chr13 115169878 + 82946188 82946475 MER4A1 472 + 143 451 120121 75 13 34 199 chain 46454 chr13 115169878 + 82954204 82954760 LTR6B 557 + 0 557 61635 359 0 1 38 10 9 120 1 2 28 chain 155623 chr13 115169878 + 82960963 82962929 HERVL-int 5654 - 1286 5330 23904 238 1 4 135 0 2079 44 9 8 167 0 1 800 1 0 106 10 7 54 1 0 370 0 1 30 chain 55192 chr13 115169878 + 82970839 82971544 LTR30 714 + 0 714 55589 83 5 6 154 8 16 170 0 1 101 16 15 168 chain 188259 chr13 115169878 + 82977138 82979543 L1PA8 5853 + 3454 5852 20215 28 3 4 506 0 2 201 0 1 10 5 4 19 0 1 107 9 1 353 2 0 25 19 18 276 6 4 40 0 4 506 1 0 44 2 0 71 1 0 12 1 0 53 2 1 15 1 0 47 1 6 39 chain 88288 chr13 115169878 + 82994687 82995690 L1PA5 6144 + 5148 6143 40266 987 8 0 8 chain 20403 chr13 115169878 + 83008773 83009124 THE1D 372 - 0 356 125886 16 1 0 118 3 19 28 50 49 87 9 0 39 chain 43544 chr13 115169878 + 83031688 83032215 LTR17 781 + 255 772 64747 44 10 0 28 0 1 327 1 0 117 chain 59429 chr13 115169878 + 83033767 83034701 HERV17-int 4347 + 12 756 53154 14 2 1 51 1 0 34 2 0 27 184 0 156 5 0 304 0 2 30 0 1 55 1 2 5 1 0 62 chain 4413 chr13 115169878 + 83033899 83033951 HERV17-int 4347 + 139 191 200811 52 chain 8793 chr13 115169878 + 83033951 83034079 HERV17-int 4347 + 13 137 166692 13 2 1 50 2 1 35 2 0 24 chain 20429 chr13 115169878 + 83060139 83060385 L1PA4 6152 - 12 259 125820 140 6 0 92 0 7 8 chain 50650 chr13 115169878 + 83060389 83060953 L1PA4 6152 + 5257 5821 58537 564 chain 23103 chr13 115169878 + 83067697 83068008 MLT2A1 477 - 0 444 115127 37 21 55 180 0 99 73 chain 97238 chr13 115169878 + 83073199 83074260 L1PA2 6032 - 6 1067 37503 1061 chain 24076 chr13 115169878 + 83084080 83084345 L1PA2 6032 + 5768 6031 109893 258 2 0 5 chain 11643 chr13 115169878 + 83091766 83091922 Tigger2a 444 + 143 301 153730 86 0 2 70 chain 5579 chr13 115169878 + 83092562 83092771 LTR52 417 + 78 329 189286 35 124 166 50 chain 46550 chr13 115169878 + 83111054 83111563 L1PA2 6032 - 0 509 61557 509 chain 27995 chr13 115169878 + 83111972 83112280 AluYb8 318 - 14 318 93017 181 4 0 123 chain 28935 chr13 115169878 + 83136116 83136418 AluYa5 310 - 8 310 89295 302 chain 3739 chr13 115169878 + 83150388 83150441 THE1B 368 - 23 75 211343 21 2 1 30 chain 28680 chr13 115169878 + 83179444 83179755 AluYa5 310 - 1 310 90408 11 2 0 298 chain 78949 chr13 115169878 + 83182067 83183069 MER11A 1151 + 9 1151 44081 46 0 99 137 0 2 31 0 2 62 0 1 45 16 17 357 1 2 9 9 43 289 chain 14922 chr13 115169878 + 83231127 83232089 MER4D0 881 - 50 813 141571 48 12 7 90 727 533 85 chain 8678 chr13 115169878 + 83243610 83243702 L1PA2 6032 - 350 442 167310 92 chain 29309 chr13 115169878 + 83243702 83244041 L1PA2 6032 + 5688 6027 87518 178 5 0 7 1 6 148 chain 5300 chr13 115169878 + 83271973 83272050 LTR12F 595 - 115 194 192022 15 4 6 58 chain 3189 chr13 115169878 + 83273748 83273783 MER31B 477 + 0 35 221144 35 chain 24622 chr13 115169878 + 83278917 83279285 THE1C 375 - 0 375 106873 26 1 0 143 0 3 8 19 17 9 0 1 4 1 0 94 5 12 58 chain 100947 chr13 115169878 + 83280183 83281531 L1PA8 5853 - 0 1390 36525 92 2 1 19 2 1 44 19 17 51 0 1 19 2 0 46 1 0 247 3 12 147 6 48 75 5 6 18 2 0 203 2 1 318 3 2 22 chain 51819 chr13 115169878 + 83281531 83282169 L1PA8 5853 + 3795 4433 57684 159 1 0 26 0 1 7 0 1 351 1 0 93 chain 28737 chr13 115169878 + 83315701 83316015 L1PA2 6032 - 1073 1387 89367 314 chain 97671 chr13 115169878 + 83316015 83317078 L1PA2 6032 + 4964 6031 37378 218 0 4 845 chain 77904 chr13 115169878 + 83357811 83359083 L1PA7 6471 - 20 996 44564 410 1 7 46 0 5 174 316 0 188 1 0 21 0 10 115 chain 55324 chr13 115169878 + 83363084 83363774 LTR12D 1347 + 405 1347 55507 95 0 258 91 1 0 173 3 0 27 6 5 28 1 0 265 chain 8529 chr13 115169878 + 83378861 83379081 MSTA 426 - 9 272 168134 33 0 34 16 24 35 24 65 63 58 chain 5097 chr13 115169878 + 83433798 83433877 MADE1 96 + 0 96 194109 16 0 1 29 5 21 29 chain 15521 chr13 115169878 + 83440041 83440204 AluYc 301 + 138 301 139824 163 chain 4447 chr13 115169878 + 83460063 83460114 MER4A 717 - 259 310 201372 51 chain 6454 chr13 115169878 + 83470605 83470682 L1PA8A 6298 + 6214 6291 181609 77 chain 3061 chr13 115169878 + 83473251 83473286 L1MB7 1623 + 1385 1420 223790 35 chain 33380 chr13 115169878 + 83473843 83474291 LTR2 463 - 0 463 78600 230 28 23 21 7 27 162 chain 16678 chr13 115169878 + 83486520 83486760 L1PA8 5853 + 5612 5847 136468 66 2 1 9 7 5 47 2 1 19 1 0 87 chain 20352 chr13 115169878 + 83500000 83500237 AluY 311 + 62 297 126055 71 2 0 164 chain 23181 chr13 115169878 + 83520856 83521143 MER4E 760 - 10 297 114764 287 chain 434672 chr13 115169878 + 83527067 83533436 L1PA8 5853 + 52 5843 9200 19 2 0 11 66 29 115 23 23 49 21 10 252 7 8 70 0 3 6 1 0 7 2 1 202 39 9 330 13 12 303 13 10 8 2 0 77 0 1 267 0 2 147 1 0 56 1 11 348 0 1 28 5 6 340 1 5 96 8 10 63 0 2 231 4 5 49 7 8 107 7 6 77 3 4 751 518 0 143 7 6 489 1 7 137 2 0 77 0 1 9 0 1 349 0 1 114 8 7 40 5 4 66 2 1 9 1 0 52 2 1 19 1 0 83 chain 43409 chr13 115169878 + 83531308 83531820 MER9a3 513 - 0 513 64923 499 0 1 13 chain 26428 chr13 115169878 + 83544451 83544824 MLT2A1 477 - 91 477 98311 7 0 3 31 0 5 58 17 18 67 3 2 21 1 5 26 0 1 142 chain 295421 chr13 115169878 + 83544833 83548610 HERVL-int 5654 - 9 3871 13678 97 10 7 103 4 5 34 0 1 110 2 1 4 0 1 55 0 1 5 1 0 331 17 20 97 6 0 10 0 6 132 0 3 251 0 4 415 0 1 230 2 1 164 0 1 77 10 8 192 1 0 89 4 85 92 4 0 963 22 23 243 chain 3207 chr13 115169878 + 83597432 83597469 Tigger3b 1229 + 533 570 220826 37 chain 24534 chr13 115169878 + 83607670 83607949 AluY 311 + 9 289 107344 123 0 1 156 chain 7941 chr13 115169878 + 83623283 83623387 MER4B 649 + 471 577 171372 66 1 3 37 chain 10331 chr13 115169878 + 83646379 83646508 THE1C-int 1605 + 312 441 158985 129 chain 20614 chr13 115169878 + 83648004 83648265 THE1C 375 + 114 375 125247 261 chain 19366 chr13 115169878 + 83675818 83676031 L1PA3long 6157 + 5944 6157 129035 213 chain 116839 chr13 115169878 + 83680455 83682031 THE1A-int 1579 + 0 1573 32184 25 1 0 16 4 5 29 3 4 359 82 72 73 0 1 20 0 2 388 0 2 360 0 1 216 chain 21368 chr13 115169878 + 83721238 83721506 AluSg4 309 + 21 288 122625 127 6 5 135 chain 38587 chr13 115169878 + 83733340 83733761 L1PA2 6032 - 0 421 71309 421 chain 3422 chr13 115169878 + 83735166 83735205 L1MB1 2102 - 109 148 216721 39 chain 315583 chr13 115169878 + 83745318 83749170 L1P2 5180 + 2 3880 12783 148 2 1 96 3 2 248 6 10 8 1 0 265 8 7 5 1 0 141 0 25 87 0 1 44 1 0 4 0 1 746 0 1 245 1 2 57 0 1 170 3 1 643 1 0 228 1 0 229 0 1 102 0 1 358 chain 9230 chr13 115169878 + 83749180 83749284 L1PA5 6144 + 6040 6144 164393 104 chain 26765 chr13 115169878 + 83770842 83771186 L1PA8 5853 + 5503 5853 97105 61 1 0 44 2 0 73 1 0 7 1 0 52 2 1 19 1 0 42 0 13 38 chain 184200 chr13 115169878 + 83814314 83816396 L1PA4 6152 - 11 2097 20571 401 1 2 649 0 3 1031 chain 18596 chr13 115169878 + 83816396 83816608 L1PA4 6152 + 3839 4051 130234 212 chain 3151 chr13 115169878 + 83822074 83822119 MER92A 404 + 133 177 221917 8 1 0 36 chain 53774 chr13 115169878 + 83824196 83824840 L1PA7 6471 + 5822 6467 56488 528 0 4 100 3 0 13 chain 104234 chr13 115169878 + 83878591 83880837 L1P2 5180 - 539 3207 35682 127 905 1320 18 0 8 141 15 13 615 0 1 425 chain 49774 chr13 115169878 + 83878719 83879340 L1P3 4156 + 3519 4139 59180 430 0 1 145 0 1 11 12 9 23 chain 28461 chr13 115169878 + 83909672 83909974 AluYk11 308 - 6 308 91334 302 chain 260454 chr13 115169878 + 83936512 83939540 L1PA5 6144 - 6 3026 15673 148 24 8 707 0 1 127 0 5 617 1 2 229 2 1 610 0 2 563 chain 21791 chr13 115169878 + 83949605 83949839 L1PA5 6144 - 6 240 121054 234 chain 23622 chr13 115169878 + 83966816 83967156 THE1B 368 + 0 368 112457 40 0 15 117 1 0 20 7 5 76 21 20 37 0 17 21 chain 193677 chr13 115169878 + 83974156 83976733 L1PA5 6144 - 0 2278 19712 154 0 1 17 3 1 211 0 1 278 304 0 103 12 13 13 0 3 313 0 1 1169 chain 17682 chr13 115169878 + 83976733 83976946 L1PA5 6144 + 3663 3875 133248 8 5 4 200 chain 5812 chr13 115169878 + 83982707 83982796 Tigger3b 1229 + 471 559 187027 51 9 8 29 chain 51492 chr13 115169878 + 84013339 84014078 LTR17 781 + 0 757 57973 58 1 0 98 1 0 23 1 0 64 1 0 84 1 0 101 9 8 18 29 0 8 1 30 33 0 1 193 1 24 14 chain 18875 chr13 115169878 + 84025472 84025706 L1PA5 6144 - 7 247 130438 24 0 1 125 1 6 84 chain 465194 chr13 115169878 + 84035755 84042036 L1PA8A 6298 + 35 6288 8211 5 1 0 18 37 26 14 3 0 21 21 12 17 1 0 9 2 1 12 1 0 7 0 1 11 2 0 15 2 0 4 1 0 8 32 28 13 8 4 4 1 0 43 27 20 12 0 4 21 1 2 40 2 0 16 15 12 30 1 2 233 0 2 197 0 4 189 17 0 263 8 7 115 0 4 91 0 2 268 4 1 290 5 2 316 8 7 112 2 0 206 3 11 227 14 13 142 2 1 4 0 1 128 2 0 5 8 7 57 1 0 41 5 17 10 11 0 10 0 3 198 0 1 143 0 1 75 0 1 279 4 0 97 7 23 80 0 5 1133 0 3 79 1 2 586 0 2 127 chain 40051 chr13 115169878 + 84060773 84061342 LTR12_ 688 + 12 688 69248 13 1 0 119 8 32 16 20 0 67 1 2 120 0 103 204 chain 14230 chr13 115169878 + 84091291 84091808 LTR12D 1347 + 584 1096 143794 114 135 8 45 178 301 30 1 0 14 chain 2231 chr13 115169878 + 84091889 84091926 LTR12D 1347 + 1038 1074 236206 11 4 3 22 chain 89562 chr13 115169878 + 84095745 84096731 L1PA2 6032 - 2 992 39791 96 0 4 890 chain 77227 chr13 115169878 + 84096731 84097577 L1PA2 6032 + 4196 5048 44492 320 0 5 519 0 1 7 chain 125601 chr13 115169878 + 84107647 84109309 HUERS-P2-int 2744 + 893 2572 29213 174 0 3 315 13 6 87 6 0 137 0 1 4 1 0 132 1 3 497 1 0 4 30 59 76 1 0 42 0 1 6 1 0 70 7 8 26 3 0 28 chain 11543 chr13 115169878 + 84121780 84122088 L1PB1 5432 - 9 286 154127 4 1 0 15 1 0 12 1 0 22 1 0 20 92 73 41 18 16 53 2 0 6 7 3 12 chain 56056 chr13 115169878 + 84158775 84159485 LTR17 781 - 66 781 55086 175 0 10 118 1 0 16 0 1 68 1 0 32 15 12 26 1 0 257 chain 12864 chr13 115169878 + 84186766 84186928 THE1B 368 - 0 161 148783 74 1 0 87 chain 85320 chr13 115169878 + 84186928 84188085 LTR12D 1347 - 0 1345 41409 109 0 1 136 18 92 201 21 6 91 0 17 43 0 2 81 1 73 113 0 1 45 2 38 239 6 0 6 10 16 35 chain 38722 chr13 115169878 + 84188175 84188645 L1PA5 6144 - 5 495 71122 31 1 7 348 4 16 80 0 2 6 chain 53975 chr13 115169878 + 84188645 84189267 L1PA5 6144 + 5003 5631 56384 288 0 4 129 3 5 202 chain 9797 chr13 115169878 + 84224367 84224650 MLT1B 390 - 46 290 161609 79 68 41 27 68 56 41 chain 23586 chr13 115169878 + 84230595 84230938 THE1C 375 - 12 375 112655 14 1 0 34 0 5 123 1 2 20 0 1 71 20 34 59 chain 25545 chr13 115169878 + 84234985 84235367 THE1D 372 + 0 372 102021 47 9 0 86 0 1 37 7 11 5 3 0 6 1 0 30 7 6 111 1 0 32 chain 83926 chr13 115169878 + 84249556 84250522 LTR13A 966 - 0 965 41941 200 1 0 765 chain 36553 chr13 115169878 + 84289927 84290389 LTR2 463 + 0 463 74166 362 12 13 88 chain 21651 chr13 115169878 + 84313786 84314093 AluSp 311 - 0 300 121564 7 2 0 21 4 0 43 2 0 87 1 4 7 3 0 9 1 2 120 chain 488209 chr13 115169878 + 84328288 84334395 L1PA7 6471 + 22 6467 7431 390 1 2 205 8 9 191 0 1 65 7 11 437 0 49 32 1 4 847 1 0 119 1 0 191 0 2 586 8 24 75 15 14 68 4 249 149 1 0 590 0 1 292 1 0 19 4 8 14 0 8 37 1 0 114 0 10 75 1 0 4 2 0 69 1 0 631 0 1 10 1 4 724 1 0 114 chain 21266 chr13 115169878 + 84338560 84338817 AluSg7 307 - 16 273 122974 95 1 0 64 0 1 97 chain 6310 chr13 115169878 + 84356543 84356637 L1PA17 2846 + 79 173 182721 59 4 5 6 1 0 24 chain 40094 chr13 115169878 + 84407516 84407964 LTR7 482 + 0 482 69192 144 0 3 83 0 31 221 chain 61711 chr13 115169878 + 84445390 84446144 MER4E 760 + 0 754 52037 164 2 0 54 6 5 132 1 0 129 0 4 266 chain 7978 chr13 115169878 + 84461532 84461751 MSTC 436 - 123 369 171185 19 110 137 90 chain 29795 chr13 115169878 + 84467265 84467626 L1PA6 6164 + 5802 6161 85450 354 2 0 5 chain 29450 chr13 115169878 + 84479033 84479342 AluYa5 310 - 1 310 86843 309 chain 20160 chr13 115169878 + 84482085 84482363 LTR8 732 - 420 701 126643 140 0 3 6 1 7 114 6 0 11 chain 28997 chr13 115169878 + 84482441 84482864 LTR7B 505 - 8 505 89000 42 15 14 54 0 1 24 1 0 40 3 4 38 0 2 26 3 27 12 0 38 60 11 21 94 chain 285946 chr13 115169878 + 84484112 84487545 HERVH-int 3825 - 0 3825 14292 225 0 2 231 37 247 39 9 11 30 0 1 649 0 3 671 4 31 78 0 1 136 1 0 691 6 5 44 15 19 12 2 1 42 1 0 4 13 159 493 chain 29949 chr13 115169878 + 84487553 84487973 LTR7B 505 - 8 505 84969 42 15 14 54 0 1 24 1 0 39 0 1 42 0 2 26 3 27 12 0 38 60 0 10 8 0 3 94 chain 43306 chr13 115169878 + 84505209 84505777 MER41A 554 - 0 554 65038 106 0 4 32 0 4 97 0 1 155 29 6 149 chain 12613 chr13 115169878 + 84514249 84514416 L1PA8 5853 + 5688 5853 149794 52 2 1 19 4 3 90 chain 212556 chr13 115169878 + 84535417 84537689 L1HS 6032 - 2797 5068 18295 154 1 0 2117 chain 262681 chr13 115169878 + 84537689 84540501 L1HS 6032 + 3220 6032 15557 2812 chain 223112 chr13 115169878 + 84571229 84574742 MER61-int 3695 + 1 3695 17705 6 2 0 5 0 2 14 1 4 14 1 0 154 37 0 73 1 0 53 13 6 78 16 2 17 0 572 226 2 1 141 0 1 43 1 6 24 2 1 274 1 7 57 27 28 64 26 0 70 20 22 5 0 1 107 0 1 56 0 6 41 0 3 58 0 1 179 0 1 100 11 11 29 0 2 41 3 1 61 0 1 74 0 1 20 1 0 71 0 1 29 40 36 85 1 0 165 6 4 156 0 1 23 316 0 16 0 1 254 15 0 87 chain 23802 chr13 115169878 + 84621022 84621291 L1PA4 6152 - 9 279 111466 151 0 1 118 chain 26965 chr13 115169878 + 84634670 84635028 L1PA8 5853 + 5502 5853 96387 64 1 0 42 2 0 74 1 0 6 1 0 52 2 1 19 2 1 92 chain 34730 chr13 115169878 + 84643008 84643516 L1PA8 5853 - 1 497 76571 28 1 0 64 1 0 16 1 0 31 42 39 62 3 1 47 1 0 27 2 1 44 3 1 135 chain 38607 chr13 115169878 + 84659230 84660465 LTR12C 1709 - 0 1058 71284 82 1 0 73 0 101 55 612 195 23 2 143 17 3 44 139 1 0 131 64 23 32 chain 2944 chr13 115169878 + 84660369 84660433 LTR12C 1709 - 684 748 150898 21 16 16 27 chain 29350 chr13 115169878 + 84665618 84665926 AluYa5 310 - 2 310 87297 308 chain 27447 chr13 115169878 + 84687541 84687847 AluYf4 310 - 4 310 94828 306 chain 92048 chr13 115169878 + 84691192 84692469 L1PA8 5853 + 4570 5853 38959 18 1 0 4 0 1 245 0 1 55 13 6 109 0 3 174 1 2 211 1 0 80 8 19 66 1 0 44 2 0 15 3 7 10 1 0 38 2 1 13 9 10 38 2 1 15 6 5 92 chain 56291 chr13 115169878 + 84708321 84708976 L1PA5 6144 + 5490 6144 54966 181 1 0 473 chain 30746 chr13 115169878 + 84717153 84717559 L1PA7 6471 - 4 401 82960 10 3 0 5 0 1 9 0 1 6 5 1 17 5 0 282 1 2 63 chain 4166 chr13 115169878 + 84719187 84719237 MER20 218 - 77 127 205020 50 chain 7124 chr13 115169878 + 84725010 84725313 L1PA15-16 3068 - 361 628 176589 17 113 91 14 1 0 7 4 3 7 1 0 14 1 0 4 1 0 44 1 0 6 2 1 10 2 1 9 1 0 18 10 6 11 1 0 4 chain 21071 chr13 115169878 + 84727608 84727831 L1PA2 6032 - 2 225 123653 223 chain 53117 chr13 115169878 + 84735372 84736040 L1PA7 6471 - 4 670 56950 8 2 0 16 1 2 72 11 9 36 3 4 519 chain 28417 chr13 115169878 + 84739313 84739613 AluYa5 310 - 10 310 91517 300 chain 14495 chr13 115169878 + 84741577 84741774 MSTA-int 1630 - 1434 1630 142903 179 6 5 12 chain 114938 chr13 115169878 + 84749047 84750325 L1PA4 6152 - 9 1291 32811 104 0 1 94 0 3 1080 chain 44755 chr13 115169878 + 84779429 84780052 L1PA8 5853 - 0 618 63326 93 1 0 16 16 15 36 16 14 66 0 1 4 2 0 46 1 0 18 0 1 308 chain 14030 chr13 115169878 + 84826007 84826181 MER41-int 2638 - 1029 1208 144461 99 0 5 75 chain 9785 chr13 115169878 + 84828927 84829051 MER50 708 + 559 684 161680 4 0 1 120 chain 5140 chr13 115169878 + 84843025 84843112 L1MB3 1562 + 1466 1552 193666 58 10 9 19 chain 23576 chr13 115169878 + 84873216 84873464 L1PA2 6032 - 2 250 112707 248 chain 17022 chr13 115169878 + 84876442 84876804 THE1C 375 + 13 375 135532 29 95 97 32 22 24 8 6 0 91 0 2 79 chain 11841 chr13 115169878 + 84885008 84885174 THE1-int 844 - 182 349 152867 83 14 15 69 chain 23686 chr13 115169878 + 84914191 84914487 AluY 311 + 2 298 112110 130 0 1 87 4 3 75 chain 41361 chr13 115169878 + 84918604 84919215 L1PB 1623 - 888 1503 67456 57 2 4 79 5 6 79 0 1 22 1 0 69 1 0 14 2 1 134 7 16 61 7 4 17 3 0 34 1 0 4 0 1 12 chain 21373 chr13 115169878 + 84919362 84919608 L1PB 1623 + 760 1006 122611 246 chain 14402 chr13 115169878 + 84962685 84962964 L1PB1 5432 - 9 264 143203 11 1 0 8 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 3 1 15 30 18 12 1 0 45 1 0 15 2 1 52 chain 37480 chr13 115169878 + 84983698 84984474 L1PB1 5432 + 4854 5430 72844 249 176 11 24 2 1 7 1 0 10 2 0 3 2 0 7 2 0 54 2 1 15 1 0 44 1 0 16 14 1 30 2 0 4 1 0 15 5 3 21 1 0 21 1 0 8 6 5 14 2 0 5 1 0 7 chain 38551 chr13 115169878 + 84988803 84989262 LTR2 463 - 0 463 71366 108 0 1 224 0 3 127 chain 375311 chr13 115169878 + 85024324 85029439 L1PB1 5432 - 329 5413 10907 218 13 19 158 3 1 78 7 0 65 0 1 333 10 11 282 0 1 123 6 8 40 20 17 15 2 5 124 1 2 588 1 0 172 6 5 338 2 0 99 46 23 53 21 23 331 0 5 149 0 1 4 2 0 99 2 0 5 12 14 87 0 5 183 31 24 174 46 38 579 0 1 134 2 1 385 39 36 27 chain 7739 chr13 115169878 + 85041733 85041968 L1MA9 1812 + 403 634 172659 7 12 0 23 1 0 69 98 107 25 chain 147863 chr13 115169878 + 85048604 85050428 L1PA7 6471 - 806 2625 24894 44 2 0 77 0 1 69 0 1 279 0 9 165 10 0 633 0 1 64 0 3 28 1 0 289 0 1 4 19 11 140 chain 64688 chr13 115169878 + 85050428 85051207 L1PA7 6471 + 5683 6470 50600 247 0 5 75 0 2 285 1 2 171 chain 26436 chr13 115169878 + 85070193 85070576 L1PA8 5853 + 5474 5853 98280 90 1 0 39 7 5 80 1 0 43 12 11 18 1 0 71 0 2 20 chain 61051 chr13 115169878 + 85076060 85076728 L1PA2 6032 - 1364 2032 52239 668 chain 126241 chr13 115169878 + 85076728 85078108 L1PA2 6032 + 4651 6031 29021 527 0 1 77 1 0 775 chain 2952 chr13 115169878 + 85094042 85094079 LTR33C 613 + 6 43 226053 37 chain 13983 chr13 115169878 + 85101235 85101389 L1P1 4361 - 473 627 144639 154 chain 34739 chr13 115169878 + 85134976 85135457 MER9a3 513 + 0 513 76559 14 4 6 86 5 6 67 15 16 63 0 17 20 0 10 129 0 1 78 chain 64846 chr13 115169878 + 85153888 85154663 LTR17 781 - 8 781 50636 428 2 1 17 1 0 327 chain 35378 chr13 115169878 + 85164890 85165371 MER4A 717 - 244 717 75694 134 10 0 53 0 1 4 1 0 102 0 1 55 0 1 122 chain 23321 chr13 115169878 + 85176191 85176470 AluSg7 307 - 16 294 114085 159 1 0 119 chain 50934 chr13 115169878 + 85192153 85192780 L1PA7 6471 - 17 640 58350 130 3 6 10 6 0 177 4 3 297 chain 186045 chr13 115169878 + 85270274 85272815 L1PA10 4194 + 1624 4150 20411 535 5 6 382 1 0 56 1 0 19 0 1 25 0 1 15 2 1 64 0 2 34 9 10 79 0 3 5 15 13 76 4 0 381 0 1 5 0 2 109 36 17 33 5 4 20 0 5 451 1 0 101 1 2 34 4 1 33 chain 236677 chr13 115169878 + 85299645 85302251 L1PA3long 6157 + 3551 6157 16944 2606 chain 8484 chr13 115169878 + 85363111 85363217 HUERS-P1-int 2401 + 721 826 168390 52 1 0 53 chain 15621 chr13 115169878 + 85387721 85387938 MER30 238 - 1 238 139517 99 2 0 6 11 33 99 chain 130557 chr13 115169878 + 85407075 85408980 L1PB1 5432 - 10 1879 27954 18 1 0 13 1 0 21 1 0 24 2 0 10 49 43 12 1 0 44 1 0 18 1 0 6 0 1 4 2 1 37 22 16 10 1 0 5 2 1 24 3 0 11 6 5 52 1 0 332 0 1 92 1 0 144 1 2 311 0 1 277 10 1 119 0 1 40 3 0 172 chain 88430 chr13 115169878 + 85431272 85432293 L1PA7 6471 - 1 1029 40210 146 0 1 184 0 3 508 0 3 183 chain 14937 chr13 115169878 + 85443677 85443871 LTR14C 587 + 389 587 141517 79 5 7 53 0 2 57 chain 49051 chr13 115169878 + 85450871 85451455 LTR14C 587 + 0 587 59711 225 0 1 115 0 1 90 12 11 116 0 2 26 chain 8998 chr13 115169878 + 85468218 85468705 LTR12D 1347 - 347 776 165612 46 278 261 43 37 0 42 28 24 13 chain 23242 chr13 115169878 + 85470053 85470336 AluSp 311 - 21 311 114481 77 2 9 204 chain 24191 chr13 115169878 + 85472003 85472309 AluY 311 + 0 302 109267 117 6 1 14 0 1 169 chain 171494 chr13 115169878 + 85479188 85481377 HERVL-int 5654 + 3457 5654 21886 325 0 1 107 7 8 96 5 0 72 15 16 226 11 10 33 0 1 10 0 2 424 1 0 4 0 1 431 0 1 58 0 3 98 0 1 98 0 3 168 chain 58809 chr13 115169878 + 85483256 85484401 L1PA8 5853 + 5036 5853 53519 55 4 5 118 2 0 12 326 14 161 0 1 141 10 1 20 2 0 46 2 0 68 2 1 9 1 0 52 2 1 19 1 0 79 0 1 13 chain 12261 chr13 115169878 + 85494124 85494446 THE1D 372 + 0 331 151149 53 9 0 21 3 0 6 103 106 5 0 2 16 15 31 91 chain 17436 chr13 115169878 + 85500719 85500978 MER1A 529 - 0 260 134420 58 35 35 33 0 1 133 chain 10068 chr13 115169878 + 85501344 85501530 L1P3b 214 + 0 175 160228 32 5 0 84 22 21 5 1 0 19 5 1 13 chain 5208 chr13 115169878 + 85517223 85517309 LOR1a 498 - 12 112 192934 7 1 0 17 14 29 47 chain 2361 chr13 115169878 + 85624102 85624188 THE1A-int 1579 - 0 86 79924 86 chain 46666 chr13 115169878 + 85624358 85624935 HERVL-int 5654 - 497 1075 61483 395 0 1 182 chain 9691 chr13 115169878 + 85624935 85625288 THE1A-int 1579 - 1197 1552 79924 32 7 0 183 0 9 131 chain 19772 chr13 115169878 + 85643632 85643902 L1PA8 5853 - 0 267 127901 39 0 1 53 1 0 15 2 1 54 1 0 9 1 0 29 0 2 42 2 0 22 chain 4236 chr13 115169878 + 85672891 85672941 THE1D 372 + 301 351 204092 50 chain 8665 chr13 115169878 + 85685282 85685427 LTR27 711 - 377 514 167398 30 18 14 74 5 1 18 chain 13777 chr13 115169878 + 85690567 85690724 L1PA4 6152 + 5986 6143 145343 157 chain 6232 chr13 115169878 + 85694469 85694536 L1PA5 6144 - 3398 3465 181876 67 chain 76055 chr13 115169878 + 85694536 85697317 L1PA5 6144 + 2733 5761 15501 144 2 1 285 8 7 201 1 0 29 2 0 5 0 2 237 0 247 453 0 4 736 2 0 128 0 1 548 chain 555232 chr13 115169878 + 85697339 85703356 L1PA2 6032 + 11 6032 799 300 0 1 2092 0 2 3096 0 1 529 chain 10420 chr13 115169878 + 85703795 85704176 L1PA5 6144 + 5761 6141 15501 50 0 3 321 4 0 6 chain 75477 chr13 115169878 + 85706734 85707705 LTR13A 966 - 0 966 45777 377 13 0 6 1 14 173 0 7 16 16 4 240 0 1 45 1 0 83 chain 5581 chr13 115169878 + 85718685 85718752 MER2 342 - 186 255 189261 46 0 2 21 chain 10016 chr13 115169878 + 85739578 85739845 MSTA 426 + 59 369 160504 41 13 37 52 65 63 41 27 48 28 chain 97264 chr13 115169878 + 85757054 85758210 L1PA7 6471 - 10 1173 37493 11 0 4 229 1 0 105 0 1 487 0 3 323 chain 4735 chr13 115169878 + 85779642 85779745 LTR12C 1709 + 651 713 198112 25 41 0 37 chain 8410 chr13 115169878 + 85789445 85789535 L1PA5 6144 + 6036 6126 168790 90 chain 29319 chr13 115169878 + 85789596 85789905 AluYa5 310 - 1 310 87446 309 chain 5287 chr13 115169878 + 85796064 85796131 THE1D 372 + 305 372 192141 67 chain 54028 chr13 115169878 + 85826528 85827183 L1PA7 6471 - 1031 1710 56072 66 0 24 261 0 1 132 2 1 40 1 0 4 1 2 148 chain 83677 chr13 115169878 + 85827183 85828187 L1PA7 6471 + 5450 6466 42040 181 1 0 67 0 2 171 1 2 83 0 11 331 1 0 168 chain 94734 chr13 115169878 + 85876415 85877465 L1PA4 6152 + 5091 6143 38153 131 0 1 417 0 1 502 chain 119453 chr13 115169878 + 85914261 85915680 SVA_B 1603 - 3 1593 31243 591 1 0 23 6 0 10 1 0 13 5 0 43 5 123 100 0 77 573 22 6 14 0 5 12 chain 19658 chr13 115169878 + 85936805 85937086 L1PA8 5853 - 6 282 128229 87 1 0 19 2 1 44 1 0 17 2 1 38 3 4 27 2 0 38 chain 3830 chr13 115169878 + 85937649 85937694 LTR12D 1347 + 706 751 209943 45 chain 29811 chr13 115169878 + 85962649 85962986 L1PA5 6144 - 1322 1658 84837 200 1 0 136 chain 110269 chr13 115169878 + 85962986 85964329 L1PA5 6144 + 4822 6142 34137 260 24 2 31 0 1 77 9 4 94 0 4 416 3 0 180 1 0 197 0 4 34 1 0 16 chain 3218 chr13 115169878 + 85968678 85968716 MSTA 426 - 236 274 220608 38 chain 33044 chr13 115169878 + 85991463 85992244 LTR71A 459 + 0 459 79148 16 329 0 188 1 2 11 1 2 141 0 1 18 0 1 36 7 10 33 chain 27912 chr13 115169878 + 86002231 86002536 AluYa5 310 + 0 299 93315 118 6 0 181 chain 48330 chr13 115169878 + 86033640 86034463 LTR12 884 + 186 869 60218 55 1 2 31 1 68 34 2 0 225 206 0 268 chain 3029 chr13 115169878 + 86047526 86047559 Kanga2_a 737 - 313 346 224419 33 chain 25223 chr13 115169878 + 86050331 86050634 AluY 311 + 0 311 103617 28 0 6 40 0 1 57 0 1 178 chain 33758 chr13 115169878 + 86055719 86056183 LTR71A 459 - 0 459 78006 73 1 0 139 7 11 164 17 9 63 chain 8375 chr13 115169878 + 86068576 86068686 MER82 654 - 399 509 168997 110 chain 41626 chr13 115169878 + 86073043 86073583 MER41A 554 + 0 539 67123 61 11 10 468 chain 134436 chr13 115169878 + 86143590 86145100 L1P1 4361 - 638 2150 27058 632 0 2 282 0 1 125 2 1 469 chain 184628 chr13 115169878 + 86145100 86147135 L1PA3long 6157 + 4121 6157 20535 1783 1 0 50 0 2 201 chain 29040 chr13 115169878 + 86160210 86160518 AluYa5 310 + 0 307 88806 132 1 0 175 chain 22668 chr13 115169878 + 86163298 86163688 LTR21B 408 - 83 408 117233 68 1 0 5 68 10 55 0 1 89 1 0 24 15 10 36 1 0 27 chain 59372 chr13 115169878 + 86189591 86190323 L1PA7 6471 - 1 732 53191 146 8 9 455 2 0 121 chain 2870 chr13 115169878 + 86200266 86200299 L1PA7 6471 - 7 40 227520 33 chain 8804 chr13 115169878 + 86216136 86216353 L1MA8 2339 - 155 346 166625 20 3 0 42 80 58 55 1 0 16 chain 22140 chr13 115169878 + 86221653 86222016 THE1C 375 + 0 375 119620 48 4 0 29 42 45 53 9 23 152 1 0 25 chain 7635 chr13 115169878 + 86258336 86258428 L1P3 4156 + 0 92 173318 92 chain 42884 chr13 115169878 + 86266642 86267117 L1PA3long 6157 + 5678 6156 65553 229 0 4 226 1 0 19 chain 25194 chr13 115169878 + 86270073 86270407 THE1C 375 + 2 336 103772 118 3 0 53 11 13 97 0 1 52 chain 79798 chr13 115169878 + 86270522 86271526 L1PA7 6471 - 2 1011 43686 143 5 6 11 11 12 662 11 14 161 chain 71552 chr13 115169878 + 86273333 86274423 LTR12 884 - 2 879 47674 138 0 2 360 6 4 40 0 1 16 173 0 259 41 0 57 chain 14337 chr13 115169878 + 86273893 86274066 LTR12 884 - 629 802 132461 173 chain 19132 chr13 115169878 + 86311551 86311889 THE1C 375 + 14 344 129734 94 30 25 79 12 15 21 10 4 11 13 12 5 0 1 63 chain 27107 chr13 115169878 + 86317390 86317759 LTR7 482 - 6 482 95913 127 0 28 13 0 1 15 9 38 29 0 1 73 0 50 53 2 0 48 chain 55339 chr13 115169878 + 86318199 86318823 L1PA4 6152 - 1 625 55499 624 chain 42293 chr13 115169878 + 86388719 86389268 L1PA8 5853 - 19 568 66277 25 0 4 64 2 1 51 1 2 8 1 0 71 2 0 44 1 0 279 chain 151940 chr13 115169878 + 86416861 86418583 L1PA5 6144 + 4410 6142 24343 736 0 5 6 0 1 254 1 0 413 0 1 259 0 4 53 chain 164742 chr13 115169878 + 86437368 86439217 L1PA4 6152 - 0 1851 22689 8 0 1 504 0 1 219 1 0 784 1 2 332 chain 36239 chr13 115169878 + 86469528 86470076 MLT2A2 560 + 0 558 74569 167 60 59 173 17 28 39 1 0 82 0 1 9 chain 544879 chr13 115169878 + 86485927 86492054 L1PA4 6152 - 1 6152 2087 1012 0 9 916 0 1 531 1 0 457 6 0 59 0 1 911 0 2 1139 0 4 968 0 14 127 chain 82603 chr13 115169878 + 86500179 86501064 L1HS 6032 - 994 1879 42460 885 chain 95201 chr13 115169878 + 86501064 86502080 L1HS 6032 + 5016 6032 38033 1016 chain 19834 chr13 115169878 + 86526290 86526508 L1PA5 6144 - 2 220 127698 218 chain 13195 chr13 115169878 + 86532314 86532551 THE1B 368 + 9 263 147487 16 15 30 112 33 32 44 4 7 13 chain 44093 chr13 115169878 + 86537367 86537875 MER9a1 513 - 4 513 64103 204 0 1 304 chain 51316 chr13 115169878 + 86542339 86542986 PABL_A 660 - 0 660 58096 68 1 0 81 0 2 419 0 9 55 0 3 23 chain 52616 chr13 115169878 + 86546075 86546680 L1PA4 6152 - 163 751 57229 425 18 1 162 chain 14177 chr13 115169878 + 86546680 86546839 L1PA4 6152 + 5993 6152 143963 159 chain 9030 chr13 115169878 + 86554114 86554381 L1PA15 4387 + 4111 4356 165439 19 58 55 16 0 2 8 17 6 39 17 14 44 21 14 28 chain 118527 chr13 115169878 + 86572220 86573528 L1PA3long 6157 - 2 1305 31607 331 0 1 323 6 0 648 chain 35999 chr13 115169878 + 86598774 86599214 L1PA4 6152 - 11 515 74895 102 8 1 298 18 89 14 chain 6131 chr13 115169878 + 86599214 86599282 L1PA4 6152 + 5651 5719 162798 68 chain 51866 chr13 115169878 + 86601104 86601838 L1PB1 5432 - 311 1154 57704 11 0 62 23 0 40 164 11 9 104 1 0 10 0 4 15 0 1 5 8 7 29 0 1 4 1 3 23 1 0 36 12 16 276 chain 5194 chr13 115169878 + 86615936 86616029 L1M3 994 + 258 350 193095 22 19 18 52 chain 10206 chr13 115169878 + 86618637 86618757 L1PA5 6144 + 5933 6053 159595 120 chain 9019 chr13 115169878 + 86643553 86643691 LOR1a 498 - 0 141 165498 53 0 1 57 15 17 13 chain 107117 chr13 115169878 + 86645114 86646497 L1PA8 5853 + 4466 5853 34940 140 5 0 343 1 2 58 0 2 71 0 2 275 4 5 148 0 8 86 4 2 70 2 1 55 8 7 19 1 0 93 chain 331194 chr13 115169878 + 86676192 86680526 L1PA8A 6298 - 7 4363 12156 545 20 3 173 0 2 77 0 3 496 1 0 108 1 0 11 1 17 168 1 0 247 0 1 65 0 8 19 1 5 101 4 5 48 0 2 42 6 1 271 23 25 163 0 3 156 0 1 11 6 9 93 0 3 17 14 4 114 0 1 316 1 2 451 19 20 91 0 4 238 0 1 215 chain 163874 chr13 115169878 + 86717939 86719951 L1PA7 6471 + 4450 6465 22823 221 6 10 801 1 0 139 1 0 253 0 1 219 1 0 42 1 2 327 chain 25752 chr13 115169878 + 86729041 86729336 AluYk4 311 - 15 311 101078 164 0 1 131 chain 23613 chr13 115169878 + 86729577 86729879 AluY 311 + 15 298 112507 108 22 3 172 chain 208756 chr13 115169878 + 86741076 86743454 L1PA4 6152 - 9 2363 18586 162 0 4 154 0 1 514 0 4 952 0 4 431 37 0 128 chain 3376 chr13 115169878 + 86752324 86752369 MER20 218 + 31 75 217556 32 1 0 12 chain 9032 chr13 115169878 + 86758548 86758719 L1M1 2793 + 2077 2231 165428 22 14 6 63 7 0 43 6 4 16 chain 94987 chr13 115169878 + 86926256 86927321 L1PA4 6152 + 5069 6134 38101 1065 chain 88536 chr13 115169878 + 86942126 86943134 L1PA5 6144 - 13 1021 40172 312 0 1 336 2 1 358 chain 19949 chr13 115169878 + 86943315 86943659 MSTA 426 + 12 381 127305 28 1 2 66 0 21 69 64 64 46 7 10 63 chain 59457 chr13 115169878 + 86958678 86959420 L1PA8 5853 - 0 735 53138 92 2 1 16 1 0 56 1 0 9 1 0 69 3 1 47 1 0 286 1 0 78 0 2 21 1 0 57 chain 66550 chr13 115169878 + 86974135 86974901 L1PA4 6152 - 870 1634 49812 63 2 0 701 chain 71017 chr13 115169878 + 86974901 86975757 L1PA4 6152 + 5289 6143 47922 11 1 2 596 2 1 102 8 9 28 0 1 42 4 0 62 chain 39843 chr13 115169878 + 87010422 87010872 LTR7 482 + 0 482 69544 225 0 1 35 0 31 190 chain 293081 chr13 115169878 + 87010883 87014693 HERVH-int 3825 + 9 3816 13820 40 0 1 161 0 11 161 11 0 149 5 0 38 1 0 7 1 0 28 0 13 13 3 0 8 148 1 17 22 0 12 88 4 25 0 20 11 2 1 49 1 0 444 15 0 200 0 1 17 0 1 243 4 31 630 0 4 101 0 3 307 9 0 225 0 3 101 1 4 26 8 218 15 6 0 5 3 9 449 chain 39769 chr13 115169878 + 87015940 87016391 LTR7 482 + 0 482 69667 263 1 32 187 chain 81371 chr13 115169878 + 87024230 87025214 L1PA7 6471 - 2 989 43019 59 0 1 353 0 1 4 1 0 11 1 0 148 0 1 275 0 2 132 chain 16903 chr13 115169878 + 87027439 87027682 AluY 311 + 59 305 135838 67 0 1 18 3 0 5 7 10 113 5 7 25 chain 13215 chr13 115169878 + 87040449 87040602 L1PA5 6144 + 5978 6131 147407 153 chain 164551 chr13 115169878 + 87062303 87064675 L1PA10 4194 + 175 2495 22738 11 2 0 11 3 0 15 16 11 9 2 0 8 6 5 5 1 0 10 52 0 9 31 54 12 2 0 21 1 0 7 2 1 10 1 0 6 5 0 15 7 0 7 3 1 10 0 1 74 2 0 406 0 1 327 1 2 423 22 26 439 0 1 105 4 8 269 chain 37297 chr13 115169878 + 87072058 87072478 L1PA4 6152 - 16 435 73084 244 1 0 175 chain 84062 chr13 115169878 + 87080588 87081725 L1PA10 4194 - 51 1205 41879 27 19 18 22 1 0 246 4 0 64 1 0 27 0 6 118 0 1 150 0 1 195 8 16 14 0 3 74 2 5 30 0 1 123 0 1 12 chain 17956 chr13 115169878 + 87093197 87093447 MLT2A1 477 - 216 477 132968 57 0 1 23 1 0 4 10 9 137 0 12 18 chain 23359 chr13 115169878 + 87127732 87128068 THE1B 368 - 29 368 113880 99 1 0 10 1 0 16 17 24 23 2 0 167 chain 136899 chr13 115169878 + 87159833 87161346 L1PA3long 6157 - 0 1566 26661 282 0 3 746 0 50 485 chain 52227 chr13 115169878 + 87161346 87161923 L1PA3long 6157 + 3996 4574 57348 232 0 1 345 chain 20216 chr13 115169878 + 87168555 87168876 THE1A 353 - 12 352 126481 27 1 3 70 11 12 88 17 35 12 1 0 46 0 1 32 2 0 14 chain 7787 chr13 115169878 + 87203002 87203101 MER57C2 434 - 0 99 172378 99 chain 5907 chr13 115169878 + 87207601 87207669 L1PA5 6144 + 6064 6132 186111 68 chain 25166 chr13 115169878 + 87214745 87215044 AluYk4 311 + 0 300 103934 126 1 0 119 4 6 49 chain 45461 chr13 115169878 + 87263350 87263885 L1PA7 6471 + 5914 6467 62535 301 0 2 176 0 16 58 chain 62604 chr13 115169878 + 87272690 87273486 L1PA8A 6298 + 5495 6291 51629 72 6 7 108 0 1 23 3 0 153 0 1 319 9 9 103 chain 520244 chr13 115169878 + 87297866 87303639 L1PA3long 6157 - 0 5785 5129 5 0 2 462 3 4 128 2 0 245 1 5 322 0 1 400 1 0 1800 1 2 190 0 2 903 1 0 444 1 0 553 0 3 71 0 4 175 1 0 64 chain 8741 chr13 115169878 + 87303641 87303741 L1P1 4361 + 158 258 166967 100 chain 30624 chr13 115169878 + 87308760 87309134 L1PA7 6471 - 7 382 83160 14 1 2 359 chain 9898 chr13 115169878 + 87325579 87325711 MER30 238 - 0 129 161078 49 3 0 80 chain 147535 chr13 115169878 + 87333976 87335651 L1PA4 6152 + 4462 6137 24955 839 1 0 596 1 2 238 chain 69506 chr13 115169878 + 87335651 87336413 L1PA3long 6157 + 5395 6157 48574 762 chain 23760 chr13 115169878 + 87346104 87346457 THE1B 368 - 2 368 111709 174 2 0 19 7 8 78 35 49 38 chain 52820 chr13 115169878 + 87357308 87358020 L1PB 1623 + 739 1450 57124 30 1 3 172 0 1 4 3 2 238 0 2 116 4 0 139 1 0 4 chain 47574 chr13 115169878 + 87358593 87359140 L1PA5 6144 + 5557 6137 60785 231 0 32 70 1 2 245 chain 4264 chr13 115169878 + 87396045 87396127 MER67D 511 + 404 485 203705 35 19 18 28 chain 44352 chr13 115169878 + 87397673 87398312 L1PA8 5853 - 0 638 63754 93 1 0 16 1 0 36 20 20 9 1 0 71 2 0 44 1 0 28 15 15 7 1 0 287 0 6 6 chain 38158 chr13 115169878 + 87398323 87398822 L1PA8 5853 + 4708 5204 71898 26 1 0 250 0 1 21 1 0 4 5 3 191 chain 52779 chr13 115169878 + 87399688 87400269 L1PA2 6032 + 5449 6030 57145 581 chain 97218 chr13 115169878 + 87403241 87404529 L1PA8A 6298 - 7 1309 37510 49 10 11 291 0 1 365 0 1 18 0 4 18 1 8 20 4 5 9 0 2 125 1 0 139 1 0 68 16 15 153 chain 27872 chr13 115169878 + 87406398 87407182 L1PB1 5432 + 4867 5413 93447 21 10 0 6 1 13 180 8 0 16 199 2 10 3 0 23 1 0 9 16 11 9 2 0 53 2 1 16 2 1 37 6 5 16 3 0 6 74 59 9 1 0 21 1 0 13 1 0 9 chain 3966 chr13 115169878 + 87413723 87413847 HERVFH21-int 991 - 37 112 207900 16 57 11 12 2 0 9 1 0 27 chain 11077 chr13 115169878 + 87444951 87445090 LTR12C 1709 + 931 1068 155906 62 2 0 75 chain 4104 chr13 115169878 + 87445652 87445822 MSTB 430 - 247 417 205876 27 2 0 7 28 29 17 60 61 29 chain 9305 chr13 115169878 + 87454106 87454305 THE1B 368 + 153 368 164041 22 2 0 23 35 45 56 21 29 40 chain 52916 chr13 115169878 + 87460029 87461177 L1PB1 5432 + 4543 5430 57073 33 4 5 28 0 4 8 7 0 462 315 79 6 2 0 7 0 3 42 3 2 15 1 0 45 1 0 11 56 42 11 2 0 24 1 0 22 1 0 13 1 0 17 2 0 8 chain 57655 chr13 115169878 + 87491200 87491914 LTR30 714 + 0 714 54157 534 13 12 158 0 1 9 chain 3034 chr13 115169878 + 87492284 87492317 MER52D 1964 - 709 742 224318 33 chain 4917 chr13 115169878 + 87493531 87493603 L1MA8 2339 - 272 343 196080 57 4 3 11 chain 30071 chr13 115169878 + 87515211 87515529 AluYb8 318 - 0 318 84605 318 chain 12261 chr13 115169878 + 87515560 87515751 THE1C-int 1605 + 1251 1595 151152 42 9 161 92 6 7 42 chain 46100 chr13 115169878 + 87543234 87543731 L1HS 6032 - 0 497 61944 497 chain 10549 chr13 115169878 + 87548403 87548523 L1P3 4156 - 1285 1405 158046 120 chain 304690 chr13 115169878 + 87548700 87552282 L1PA6 6164 + 2576 6162 13218 609 2 0 4 0 1 32 0 1 307 1 0 119 0 1 1317 0 2 727 8 10 321 0 5 58 6 5 61 4 0 6 chain 4367 chr13 115169878 + 87575299 87575381 MER83B 357 - 36 117 202373 53 1 0 4 1 0 4 6 7 13 chain 26200 chr13 115169878 + 87578544 87579121 MER50 708 - 22 597 99201 109 1 0 33 4 0 25 27 28 10 1 0 54 45 54 66 25 18 41 90 91 46 chain 28903 chr13 115169878 + 87592400 87592704 AluYa5 310 - 6 310 89447 304 chain 7634 chr13 115169878 + 87602067 87602159 AluY 311 + 38 130 173325 92 chain 28057 chr13 115169878 + 87602844 87603168 AluYa5 310 - 12 310 92802 126 26 0 172 chain 49062 chr13 115169878 + 87605644 87606183 L1PA3long 6157 - 1 541 59703 332 0 1 207 chain 36471 chr13 115169878 + 87609148 87609579 L1PA7 6471 - 2263 2696 74274 114 2 3 255 0 1 60 chain 178917 chr13 115169878 + 87609582 87611824 L1PA7 6471 + 4230 6459 21079 507 1 0 93 2 0 75 13 8 40 3 0 155 22 0 129 2 3 51 0 7 301 0 4 17 0 4 5 1 2 122 0 3 262 4 1 6 0 3 431 chain 36756 chr13 115169878 + 87619043 87619569 MLT2A2 560 + 0 560 73868 182 0 23 29 2 0 166 2 13 29 0 1 17 24 25 14 1 0 6 0 1 54 chain 5525 chr13 115169878 + 87653231 87653392 L1PB4 2604 + 2407 2570 189789 45 68 71 29 8 7 11 chain 30285 chr13 115169878 + 87675885 87676200 AluYb8 318 + 0 315 83977 315 chain 7133 chr13 115169878 + 87688254 87688359 MER49 923 + 0 95 176524 11 10 0 84 chain 316378 chr13 115169878 + 87695744 87699706 L1PA7 6471 + 2527 6470 12747 105 0 1 48 0 4 72 0 2 29 71 11 306 0 2 377 17 14 24 2 1 434 0 2 144 1 0 236 5 4 642 0 1 80 0 1 172 0 22 167 0 1 148 0 7 37 1 0 80 1 2 40 0 1 98 3 4 127 0 1 251 5 6 239 chain 4034 chr13 115169878 + 87696017 87696069 L1PA7 6471 + 5200 5253 202672 11 1 2 40 chain 23024 chr13 115169878 + 87702730 87703010 AluSp 311 + 16 297 115516 151 0 1 129 chain 22763 chr13 115169878 + 87705164 87705580 THE1D 372 + 0 372 116764 18 6 0 57 36 0 9 4 0 56 50 52 180 chain 20151 chr13 115169878 + 87715597 87715827 L1PA5 6144 - 1 231 126669 230 chain 5094 chr13 115169878 + 87734143 87734250 L1MA3 4352 + 3816 3922 194141 21 28 29 39 1 0 3 1 0 14 chain 10595 chr13 115169878 + 87799314 87799446 THE1D 372 + 238 370 157848 132 chain 17306 chr13 115169878 + 87805214 87805412 L1PA5 6144 + 5941 6139 134772 198 chain 101861 chr13 115169878 + 87813807 87815117 L1PA8 5853 + 3869 5190 36295 253 1 0 119 28 29 35 1 5 24 2 0 160 0 5 217 1 2 5 1 0 20 0 8 255 2 0 3 2 0 181 chain 45337 chr13 115169878 + 87833493 87833978 L1HS 6032 - 0 485 62675 485 chain 288307 chr13 115169878 + 87840371 87843952 HERVH-int 3825 - 0 3825 14139 225 0 2 117 0 1 142 8 218 39 9 11 677 24 16 27 0 4 567 7 8 301 1 0 10 0 2 28 9 0 88 11 12 89 35 5 393 1 4 109 8 28 46 1 52 24 1 0 10 1 0 38 5 0 136 4 6 390 chain 26997 chr13 115169878 + 87843954 87844363 LTR7 482 - 0 482 96293 46 15 17 124 1 32 4 0 1 22 11 12 109 8 46 69 chain 40454 chr13 115169878 + 87847284 87847769 MER9a1 513 + 14 513 68658 144 0 13 303 1 2 37 chain 31956 chr13 115169878 + 87858489 87858926 MLT2A1 477 - 0 477 80930 44 40 76 183 1 5 169 chain 58692 chr13 115169878 + 87858926 87859704 HERVL-int 5654 - 0 787 53584 60 0 1 57 7 11 44 13 12 43 0 6 86 4 5 108 1 0 35 2 1 318 chain 54019 chr13 115169878 + 87876807 87877494 L1PA8 5853 - 1 681 56349 92 1 0 19 2 1 47 1 0 11 1 0 74 2 0 44 1 0 392 chain 65161 chr13 115169878 + 87888626 87889348 L1PA3long 6157 - 5 727 50493 722 chain 22595 chr13 115169878 + 87902299 87902582 AluSp 311 + 13 302 117602 29 0 6 254 chain 41018 chr13 115169878 + 87923284 87923808 L1PA5 6144 + 5671 6139 67872 53 56 0 415 chain 7878 chr13 115169878 + 87935100 87935184 L1PA4 6152 + 6068 6152 171823 84 chain 14694 chr13 115169878 + 87953735 87953895 L1PA3long 6157 + 5997 6157 142286 160 chain 24621 chr13 115169878 + 87958907 87959171 L1PA4 6152 - 528 792 106878 264 chain 47987 chr13 115169878 + 87959171 87959722 L1PA4 6152 + 5593 6143 60497 93 2 0 5 0 2 125 1 0 325 chain 19640 chr13 115169878 + 87971919 87972134 L1PA2 6032 - 589 804 128280 215 chain 51444 chr13 115169878 + 87972134 87972701 L1PA2 6032 + 5447 6032 58011 31 1 19 535 chain 19262 chr13 115169878 + 87973765 87974043 L1PA8 5853 - 0 272 129340 92 2 1 19 2 1 53 11 9 70 2 0 27 chain 16225 chr13 115169878 + 87974055 87974251 L1PA8 5853 + 5372 5568 137683 168 0 1 23 1 0 4 chain 33860 chr13 115169878 + 87985875 87986353 LTR12F 595 + 0 555 77841 84 25 0 20 7 2 22 7 114 77 1 2 5 1 0 229 chain 260442 chr13 115169878 + 87986424 87989671 HERV9-int 5642 + 11 3346 15676 227 0 1 11 11 7 6 0 4 237 7 10 87 0 2 6 19 18 71 21 0 18 6 0 130 2 0 84 12 97 27 1 0 60 13 18 101 9 5 146 0 1 471 1 0 227 0 3 58 0 23 75 1 2 1102 chain 3808 chr13 115169878 + 87993087 87993165 MLT2A1 477 - 0 64 210271 37 9 3 7 7 0 10 1 0 7 chain 508935 chr13 115169878 + 88014989 88021067 L1PA5 6144 - 3 6107 6250 49 0 1 394 9 0 218 0 1 180 4 8 470 8 7 90 0 1 214 0 1 997 0 2 229 1 0 724 0 1 121 0 1 124 1 0 5 3 0 234 0 3 501 1 4 344 0 3 45 9 0 181 0 3 773 19 19 25 7 33 98 chain 41699 chr13 115169878 + 88028786 88029245 L1PA4 6152 - 1 460 67026 459 chain 23972 chr13 115169878 + 88029245 88029514 L1PA4 6152 + 5412 5680 110493 60 1 0 208 chain 88307 chr13 115169878 + 88057621 88064532 L1PA7 6471 - 10 2418 40259 131 11 16 230 5634 1110 26 0 1 34 1 2 25 0 1 110 0 3 42 0 1 160 19 25 148 0 1 107 0 1 38 5 6 190 chain 13546 chr13 115169878 + 88057993 88058146 L1PA7 6471 + 5930 6083 146182 153 chain 120775 chr13 115169878 + 88064532 88066034 L1PA7 6471 + 4966 6461 30768 421 6 0 9 0 6 219 1 0 531 4 5 51 12 5 180 0 2 6 14 12 48 chain 105900 chr13 115169878 + 88075981 88077310 L1PA7 6471 - 10 1351 35280 139 2 1 5 0 1 31 13 15 18 1 0 261 0 3 29 1 2 339 0 3 8 0 4 482 chain 79499 chr13 115169878 + 88089524 88090430 L1P1 4361 - 1016 1921 43825 148 2 1 25 2 1 66 0 1 663 chain 8624 chr13 115169878 + 88090430 88090524 L1P3 4156 + 3646 3740 166142 94 chain 207035 chr13 115169878 + 88090557 88092932 L1PA4 6152 + 3753 6143 18715 605 0 2 635 0 5 118 2 1 34 0 5 64 1 0 5 5 6 73 0 3 508 1 2 324 chain 7006 chr13 115169878 + 88107991 88108071 L1PA4 6152 - 176 254 177431 14 2 0 64 chain 4290 chr13 115169878 + 88108081 88108128 L1PA6 6164 + 6113 6160 203351 47 chain 8889 chr13 115169878 + 88131497 88131595 L1PA5 6144 + 6044 6142 166189 98 chain 16437 chr13 115169878 + 88137297 88137639 L1MA1 4479 + 3845 4190 137103 14 1 0 88 1 0 5 4 0 6 1 3 10 39 51 56 1 0 29 2 0 30 23 27 8 6 0 18 chain 31162 chr13 115169878 + 88185200 88185573 L1PA7 6471 + 6100 6469 82232 115 1 0 243 3 0 11 chain 79859 chr13 115169878 + 88196478 88197388 L1PA4 6152 + 5235 6152 43659 66 0 1 826 1 2 11 0 5 6 chain 41862 chr13 115169878 + 88197664 88198169 MER9a2 513 + 0 513 66816 361 0 4 13 0 2 65 0 2 66 chain 10869 chr13 115169878 + 88212839 88213160 L1PB1 5432 + 5114 5406 156701 24 1 0 5 42 35 33 22 10 14 2 1 45 32 29 16 14 11 9 2 0 24 1 0 14 0 1 6 1 0 9 0 1 5 chain 114081 chr13 115169878 + 88213316 88214683 SVA_B 1603 + 0 1591 33080 9 0 14 19 30 5 474 0 79 212 4 85 27 0 78 14 1 0 133 1 0 40 1 0 327 0 1 4 2 1 69 chain 135886 chr13 115169878 + 88239335 88241083 L1PA7 6471 + 4714 6465 26864 227 20 18 146 0 1 79 7 16 362 1 0 57 29 29 61 1 0 587 22 22 140 3 0 6 chain 27356 chr13 115169878 + 88244491 88244905 L1MA1 4479 + 3739 4148 95091 16 1 0 71 1 0 20 2 0 13 6 16 10 6 4 10 0 1 47 1 0 5 3 0 126 1 0 21 2 0 7 2 0 36 1 0 6 chain 5106 chr13 115169878 + 88252281 88252345 MLT2A2 560 + 494 558 194027 64 chain 163894 chr13 115169878 + 88256872 88258998 L1PA8 5853 + 3725 5853 22821 276 0 2 12 5 4 55 6 10 109 0 2 50 4 0 94 1 0 141 0 14 130 0 1 384 9 0 541 0 1 13 1 0 42 8 6 66 2 1 8 2 1 52 2 1 19 1 0 93 chain 43429 chr13 115169878 + 88283822 88284298 L1PA3long 6157 - 0 476 64897 476 chain 8808 chr13 115169878 + 88305354 88305507 L1PA16 3655 + 3429 3588 166610 106 23 32 10 3 0 11 chain 44387 chr13 115169878 + 88310565 88311104 L1PA7 6471 + 5930 6470 63702 377 0 1 162 chain 21664 chr13 115169878 + 88315388 88315651 AluSg 306 + 4 267 121525 263 chain 12777 chr13 115169878 + 88344470 88344645 MER6A 605 - 32 207 149150 27 3 2 34 0 1 111 chain 190279 chr13 115169878 + 88351733 88353862 L1PA3long 6157 - 0 2132 20018 510 5 10 1063 3 1 548 chain 5196 chr13 115169878 + 88381443 88381504 Tigger3c 601 - 105 166 193080 61 chain 6499 chr13 115169878 + 88383183 88383262 MADE1 96 - 1 96 181248 50 0 16 29 chain 50300 chr13 115169878 + 88388364 88388933 L1PA3long 6157 - 15 577 58792 132 7 0 430 chain 2802 chr13 115169878 + 88408902 88408932 L1MC3 1789 - 1491 1521 228701 30 chain 54856 chr13 115169878 + 88415010 88415620 L1PA3long 6157 + 5552 6157 55797 590 3 0 8 2 0 7 chain 84978 chr13 115169878 + 88442826 88443934 L1PA8 5853 - 0 1099 41518 57 5 0 36 1 0 19 2 1 49 1 0 12 6 5 62 7 5 42 2 1 539 0 6 10 5 0 55 0 2 198 chain 26001 chr13 115169878 + 88453702 88453988 L1PA2 6032 + 5746 6032 100011 286 chain 28633 chr13 115169878 + 88478408 88478748 L1PA7 6471 - 2 338 90587 6 4 0 330 chain 16262 chr13 115169878 + 88478748 88478937 L1PA7 6471 + 5937 6127 137576 60 0 1 129 chain 15264 chr13 115169878 + 88483432 88483809 L1PB1 5432 - 5 326 140589 5 2 0 17 3 2 12 22 0 21 1 0 22 2 0 16 1 0 5 2 0 30 14 1 15 1 0 40 5 4 18 1 0 30 23 21 9 5 1 11 1 0 11 1 0 22 1 0 8 chain 48165 chr13 115169878 + 88505036 88505611 L1PA7 6471 + 5778 6349 60347 438 1 2 54 3 0 49 2 0 28 chain 15014 chr13 115169878 + 88522041 88522321 Tigger3a 397 - 60 397 141282 91 14 21 86 55 105 34 chain 124078 chr13 115169878 + 88548623 88549994 L1PA3long 6157 - 0 1372 29677 823 0 1 548 chain 77704 chr13 115169878 + 88549994 88550900 L1PA3long 6157 + 3849 4730 44620 524 29 5 263 1 0 89 chain 5697 chr13 115169878 + 88579760 88579858 L1MA3 4352 + 4221 4311 188135 14 4 0 23 2 0 24 2 1 5 1 0 23 chain 3158 chr13 115169878 + 88585753 88585794 Charlie4a 502 - 249 290 221775 41 chain 38081 chr13 115169878 + 88592121 88592601 L1PA7 6471 + 5986 6461 72012 51 0 1 269 23 17 137 chain 42646 chr13 115169878 + 88595864 88596352 MER9a1 513 - 25 513 65844 488 chain 166525 chr13 115169878 + 88627864 88629770 SVA_D 2077 - 0 2001 22457 8 2 0 294 0 1 8 1 0 329 0 49 301 0 1 48 0 2 43 0 1 31 0 1 10 20 62 645 0 1 166 chain 11239 chr13 115169878 + 88651590 88651768 MSTA 426 + 203 381 155262 5 1 0 7 2 0 85 14 17 64 chain 163150 chr13 115169878 + 88658750 88660568 L1P1 4361 - 253 2072 22928 245 1 2 1572 chain 4050 chr13 115169878 + 88670421 88670470 THE1C-int 1605 + 160 209 206651 49 chain 9209 chr13 115169878 + 88679404 88679508 MSTA 426 + 318 422 164510 104 chain 12783 chr13 115169878 + 88687259 88687490 L1MA3 4352 - 0 222 149120 20 8 4 14 7 6 20 1 0 5 2 1 22 15 13 117 chain 9874 chr13 115169878 + 88710216 88710350 THE1C 375 + 0 127 161212 32 8 1 94 chain 20697 chr13 115169878 + 88741651 88742020 L1MA2 4263 - 150 527 124976 8 1 0 47 7 0 76 64 83 91 3 0 72 chain 27721 chr13 115169878 + 88746103 88746458 L1PA7 6471 + 6116 6466 93963 21 1 0 321 4 0 8 chain 83365 chr13 115169878 + 88785283 88786309 MER11C 1089 - 26 1089 42171 197 1 2 126 0 1 38 1 0 5 0 4 369 0 4 33 0 27 5 0 1 251 chain 4103 chr13 115169878 + 88839674 88839750 MLT2B1 522 - 425 522 205906 22 18 39 36 chain 5046 chr13 115169878 + 88840113 88840173 MADE1 96 + 21 96 194667 9 0 15 51 chain 240873 chr13 115169878 + 88844179 88846961 L1PA5 6144 - 12 2802 16729 664 0 1 123 0 1 68 0 4 294 2 1 37 1 2 13 0 1 58 0 1 242 1 0 661 4 5 454 2 1 16 0 1 142 chain 68590 chr13 115169878 + 88851207 88851936 L1HS 6032 - 1 730 48993 729 chain 106016 chr13 115169878 + 88851936 88853106 L1P1 4361 + 2629 3799 35253 1170 chain 10398 chr13 115169878 + 88931972 88932096 HERVL-int 5654 + 68 192 158705 124 chain 19722 chr13 115169878 + 88942884 88943127 THE1A 353 - 0 243 128035 243 chain 118845 chr13 115169878 + 88943892 88945338 LTR12C 1709 + 0 1709 31477 198 7 8 444 0 119 60 0 40 243 1 0 5 3 1 106 0 4 162 0 103 116 17 16 84 chain 5941 chr13 115169878 + 88951075 88951147 MER2 342 + 131 203 185770 72 chain 34209 chr13 115169878 + 88982872 88983374 LTR10D 510 + 0 505 77337 65 2 0 5 8 9 15 1 9 43 0 1 78 6 0 9 10 13 172 2 0 86 chain 8766 chr13 115169878 + 88996567 88996666 L1PA5 6144 - 2 101 166840 99 chain 29794 chr13 115169878 + 89003291 89003601 AluYa5 310 - 0 310 85483 310 chain 37666 chr13 115169878 + 89026306 89026821 MER9a1 513 + 16 513 72592 19 4 30 313 57 12 44 0 1 78 chain 27013 chr13 115169878 + 89039295 89039699 MER4A1 472 - 14 472 96246 172 23 98 19 21 0 169 chain 21885 chr13 115169878 + 89053978 89054223 L1PA5 6144 - 1 246 120685 245 chain 26599 chr13 115169878 + 89073258 89073541 AluY 311 + 18 302 97663 114 0 1 169 chain 68522 chr13 115169878 + 89086879 89087832 MER11A 1151 + 0 1135 49030 55 0 99 21 9 1 54 2 1 63 4 0 23 10 12 98 16 17 94 0 1 34 0 1 110 0 1 122 0 81 28 0 9 47 2 1 10 5 6 146 chain 30253 chr13 115169878 + 89090000 89090317 AluYb8 318 - 1 318 84059 317 chain 137097 chr13 115169878 + 89096373 89097881 L1PA3long 6157 - 14 1522 26622 1508 chain 4173 chr13 115169878 + 89143253 89143304 LOR1-int 1871 + 988 1040 204943 12 0 1 39 chain 39402 chr13 115169878 + 89165073 89165524 LTR7 482 - 0 482 70159 187 0 31 264 chain 297001 chr13 115169878 + 89166778 89170545 HERVH-int 3825 - 0 3825 13585 213 15 17 257 8 218 536 1 0 105 0 5 124 0 4 628 9 37 239 0 1 662 1 0 49 2 1 14 83 0 16 2 1 10 1 22 10 1 0 25 4 1 12 1 14 24 1 0 10 129 0 38 5 0 532 chain 39165 chr13 115169878 + 89170547 89170993 LTR7 482 - 0 477 70517 191 0 31 255 chain 8099 chr13 115169878 + 89175245 89175353 THE1-int 844 + 431 541 170493 10 0 2 83 1 0 4 0 1 10 chain 5684 chr13 115169878 + 89204474 89204549 Tigger2b_Pri 1066 - 956 1030 188260 29 1 0 45 chain 10556 chr13 115169878 + 89245422 89245709 L1PA15-16 3068 + 301 545 158023 58 85 45 28 21 21 22 16 13 57 chain 195692 chr13 115169878 + 89248367 89250568 L1PA5 6144 + 3931 6135 19528 1363 0 3 838 chain 29113 chr13 115169878 + 89253471 89253781 AluYa5 310 - 0 310 88491 310 chain 95708 chr13 115169878 + 89263568 89264756 L1PA7 6471 - 12 1175 37894 94 2 0 87 0 2 138 1 2 240 28 1 269 0 2 100 1 0 228 chain 9987 chr13 115169878 + 89278173 89278284 AluYk4 311 + 199 310 160648 111 chain 7457 chr13 115169878 + 89295191 89295282 L1MA2 4263 - 1866 1957 174413 91 chain 90272 chr13 115169878 + 89297089 89298161 MER11C 1089 - 16 1089 39547 470 30 31 572 chain 30726 chr13 115169878 + 89308878 89309313 LTR3B 427 - 0 427 82992 79 1 0 5 20 15 30 7 6 131 1 0 161 chain 7480 chr13 115169878 + 89328885 89328974 MLT1A0 366 - 0 89 174276 89 chain 150558 chr13 115169878 + 89335178 89336824 L1PA3long 6157 + 4506 6152 24532 1646 chain 62992 chr13 115169878 + 89358062 89358812 MER4E 760 - 9 760 51449 619 0 1 4 1 0 103 0 1 23 chain 5936 chr13 115169878 + 89376790 89376857 THE1A-int 1579 + 1512 1579 185826 67 chain 25104 chr13 115169878 + 89390235 89390590 THE1A 353 + 0 352 104267 110 1 0 91 12 13 88 5 2 48 chain 11069 chr13 115169878 + 89426586 89426723 MER57B1 401 - 18 155 155933 137 chain 67983 chr13 115169878 + 89451755 89453010 L1MA1 4479 - 289 1519 49253 18 0 1 5 52 39 14 8 6 19 0 1 9 1 0 126 3 0 5 1 0 51 8 15 35 2 0 20 1 0 51 10 11 9 1 0 16 2 0 18 7 6 68 1 2 69 1 2 23 56 60 103 2 0 72 4 0 53 4 0 12 1 0 57 77 76 133 2 0 25 chain 2738 chr13 115169878 + 89472588 89472617 MER20 218 + 39 68 229636 29 chain 209832 chr13 115169878 + 89482651 89484994 L1PA3long 6157 - 1686 4027 18499 178 4 7 411 6 0 968 0 1 776 chain 153054 chr13 115169878 + 89484994 89486683 L1PA3long 6157 + 4468 6157 24196 85 1 0 532 0 1 1071 chain 3316 chr13 115169878 + 89494693 89494729 tRNA-Gly-GGY 63 + 0 36 218667 36 chain 28705 chr13 115169878 + 89522825 89523132 AluYa5 310 + 0 306 90314 123 1 0 183 chain 30614 chr13 115169878 + 89524002 89524448 MER4A1 472 - 0 472 83180 64 9 10 119 31 54 208 0 2 15 chain 23887 chr13 115169878 + 89532729 89533031 AluY 311 + 0 299 110976 30 4 0 102 0 1 166 chain 10255 chr13 115169878 + 89545051 89545305 L1PB1 5432 - 8 239 159351 4 1 0 16 1 0 13 1 0 20 6 5 20 2 0 11 11 8 19 13 5 7 3 0 14 2 1 44 19 17 27 chain 24332 chr13 115169878 + 89562781 89563078 AluY 311 + 2 297 108469 129 0 2 117 4 0 47 chain 3202 chr13 115169878 + 89618035 89618075 L1MA9 1812 - 94 135 220903 13 0 1 27 chain 70723 chr13 115169878 + 89654377 89655472 L1PB1 5432 - 338 1446 48057 56 12 20 140 1 3 167 0 3 55 5 6 4 1 0 12 6 0 13 8 16 88 64 60 63 11 11 20 7 8 252 0 1 110 chain 187376 chr13 115169878 + 89674532 89676789 L1PA6 6164 - 2 2261 20302 518 9 7 118 0 9 193 2 0 4 5 0 63 0 1 44 4 3 72 0 1 1125 9 10 91 chain 69107 chr13 115169878 + 89677746 89678589 L1PA7 6471 + 5628 6469 48758 440 0 1 389 3 0 11 chain 8676 chr13 115169878 + 89725002 89725226 L1PB1 5432 - 31 232 167325 10 1 0 21 1 0 24 24 19 20 32 20 6 1 0 41 6 4 15 2 1 20 chain 551402 chr13 115169878 + 89740139 89746172 L1PA2 6032 + 0 6030 1266 166 0 5 274 5 6 562 4 0 4231 3 0 622 5 0 7 0 5 141 2 0 11 chain 11944 chr13 115169878 + 89751185 89751536 THE1B 368 + 7 368 152425 57 178 187 23 3 4 90 chain 48639 chr13 115169878 + 89756897 89757434 L1PA3long 6157 + 5619 6156 59998 537 chain 28372 chr13 115169878 + 89771896 89772260 THE1B 368 - 0 368 91689 151 2 3 172 0 5 24 2 0 13 chain 24241 chr13 115169878 + 89784237 89784521 AluY 311 + 4 288 108985 114 1 0 14 0 1 155 chain 24866 chr13 115169878 + 89794256 89794586 THE1C 375 - 50 375 105542 200 3 0 47 2 0 78 chain 5154 chr13 115169878 + 89806041 89806104 L1PA15-16 3068 - 2528 2591 193514 63 chain 34646 chr13 115169878 + 89811359 89811781 L1PA7 6471 - 10 435 76696 254 0 3 168 chain 250483 chr13 115169878 + 89846859 89850051 L1PA7 6471 + 3291 6470 16212 106 14 13 92 10 11 119 0 1 351 6 7 346 9 1 300 1 0 30 0 4 145 0 1 103 5 1 63 14 13 230 0 4 225 0 1 153 0 2 10 0 8 69 0 2 416 26 1 30 0 1 66 0 1 253 chain 32503 chr13 115169878 + 89860687 89861160 MER4A1 472 + 0 472 80019 53 1 0 45 10 9 123 11 12 20 13 12 138 0 1 59 chain 88226 chr13 115169878 + 89894801 89895864 MER11C 1089 + 0 1073 40290 250 0 1 62 1 5 228 6 4 4 0 1 135 0 4 43 0 1 127 0 1 207 chain 20995 chr13 115169878 + 89914674 89915017 L1MA1 4479 - 1340 1679 123934 47 2 1 6 0 1 99 2 0 27 2 1 75 36 36 42 1 0 4 chain 32718 chr13 115169878 + 89917682 89918046 L1PA2 6032 + 5668 6032 79655 364 chain 11506 chr13 115169878 + 89929438 89929667 L1MA3 4352 + 4119 4333 154268 81 0 4 7 2 0 6 29 18 23 2 0 24 1 0 6 1 0 29 1 0 11 1 0 5 chain 5411 chr13 115169878 + 89938665 89938752 MLT1B 390 + 297 389 190883 24 11 16 52 chain 6510 chr13 115169878 + 89945743 89945812 L1PA4 6152 - 434 503 180421 69 chain 38560 chr13 115169878 + 89945812 89946243 L1PA4 6152 + 5720 6151 71355 431 chain 28888 chr13 115169878 + 89976999 89977461 MER51B 395 + 0 384 89500 39 13 0 47 62 0 101 1 0 42 1 0 16 1 0 139 chain 30375 chr13 115169878 + 90058384 90058779 LTR7 482 - 57 481 83725 131 0 31 40 1 0 108 15 14 100 chain 20935 chr13 115169878 + 90090457 90090708 AluY 311 + 47 300 124163 79 0 2 172 chain 22003 chr13 115169878 + 90093111 90093428 AluSc5 308 - 4 300 120213 26 1 0 160 30 10 100 chain 42907 chr13 115169878 + 90108791 90109339 MLT2A2 560 + 0 560 65531 402 0 11 68 8 9 70 chain 10748 chr13 115169878 + 90141072 90141193 L1PA5 6144 + 6021 6142 157206 121 chain 120122 chr13 115169878 + 90144042 90145586 THE1B-int 1605 - 7 1605 31018 194 1 2 233 22 38 55 4 0 220 1 2 117 0 15 44 1 0 222 1 26 408 0 1 21 chain 30140 chr13 115169878 + 90161635 90161952 AluYb8 318 + 0 317 84349 317 chain 63677 chr13 115169878 + 90163610 90164362 L1PA7 6471 + 5700 6468 51154 79 0 15 192 0 1 481 chain 50411 chr13 115169878 + 90202823 90203520 LTR12_ 688 + 0 680 58704 24 1 0 19 4 5 32 25 0 62 3 4 171 8 14 80 0 4 14 3 0 251 chain 41716 chr13 115169878 + 90223751 90224254 LTR19A 502 + 0 502 67006 65 1 0 437 chain 9582 chr13 115169878 + 90225932 90226084 MER4E1 777 + 0 145 162684 13 7 6 25 2 0 3 3 0 5 1 0 93 chain 173380 chr13 115169878 + 90247559 90249913 HERVL-int 5654 + 3420 5654 21666 561 4 6 437 1 2 262 7 12 498 1 0 4 1 2 13 7 4 114 4 8 45 144 10 36 0 1 48 0 1 57 1 4 109 chain 58798 chr13 115169878 + 90264002 90264804 LTR17 781 - 9 781 53527 22 1 23 17 19 0 135 0 1 246 5 4 59 36 2 54 1 2 207 chain 29139 chr13 115169878 + 90307889 90308410 THE1C-int 1605 + 1174 1605 88371 123 11 14 80 121 29 37 1 0 148 chain 60293 chr13 115169878 + 90316938 90317714 LTR12 884 + 0 884 52685 25 1 0 30 0 107 57 4 6 153 2 0 33 2 3 162 0 1 307 chain 99385 chr13 115169878 + 90332974 90334201 L1PA8A 6298 - 786 2013 36932 313 0 1 369 8 4 8 0 2 115 0 1 414 chain 60332 chr13 115169878 + 90334202 90335102 L1PA8A 6298 + 5514 6289 52663 65 0 1 212 128 0 384 13 15 98 chain 20717 chr13 115169878 + 90342719 90342978 AluY 311 + 27 287 124903 105 10 11 144 chain 63748 chr13 115169878 + 90370624 90372010 L1P2 5180 - 3182 4198 51124 125 378 0 304 2 4 29 1 2 77 9 0 7 101 111 91 1 0 161 0 3 35 32 34 33 chain 3836 chr13 115169878 + 90401273 90401350 MADE1 96 + 0 92 209831 16 15 31 14 1 0 31 chain 34391 chr13 115169878 + 90446994 90447439 L1PA8 5853 - 769 1221 77074 75 2 0 172 0 2 5 5 12 9 0 1 125 1 0 51 chain 45804 chr13 115169878 + 90447440 90448003 L1PA8 5853 + 5093 5651 62229 294 2 0 177 1 0 44 2 0 43 chain 26535 chr13 115169878 + 90469300 90469653 THE1B 368 + 0 359 97911 47 0 9 116 2 1 13 8 6 167 chain 7612 chr13 115169878 + 90490728 90490861 MSTB1 431 - 12 145 173465 51 0 1 16 27 26 39 chain 18745 chr13 115169878 + 90506965 90507171 L1PA4 6152 + 5944 6148 130835 27 2 0 177 chain 100149 chr13 115169878 + 90535199 90536567 LTR12C 1709 - 0 1625 36731 84 5 4 389 0 17 97 14 101 180 4 124 242 24 19 55 1 0 9 7 50 42 18 19 10 9 11 104 6 0 68 chain 31358 chr13 115169878 + 90553520 90553939 L1PA6 6164 - 2 389 81889 8 16 0 56 1 0 150 3 4 128 12 0 6 4 0 35 chain 43593 chr13 115169878 + 90566365 90566917 MLT2A2 560 - 9 560 64697 360 1 0 191 chain 4497 chr13 115169878 + 90584443 90584571 L1PB1 5432 - 34 160 200813 7 1 0 21 1 0 24 44 52 13 8 0 9 chain 12818 chr13 115169878 + 90584915 90585087 SVA_C 1631 - 1466 1630 148984 130 3 1 13 10 4 16 chain 28835 chr13 115169878 + 90585225 90585642 L1PB 1623 - 1018 1430 89746 108 1 2 10 1 0 72 1 0 4 9 6 131 4 3 76 chain 42581 chr13 115169878 + 90629133 90629686 MER41A 554 - 0 554 65926 365 13 14 175 chain 26330 chr13 115169878 + 90673888 90674195 AluYc 301 + 1 301 98695 113 7 0 187 chain 117538 chr13 115169878 + 90675135 90676499 L1PA5 6144 - 0 1345 31950 351 0 1 415 1 0 151 19 0 427 chain 24527 chr13 115169878 + 90716460 90716783 THE1B 368 + 0 327 107395 169 1 0 21 0 4 6 1 0 10 0 4 16 1 0 12 1 0 85 chain 23075 chr13 115169878 + 90725118 90725397 AluY 311 + 4 280 115275 119 9 6 151 chain 3003 chr13 115169878 + 90739618 90739654 MER67C 710 - 594 630 224980 36 chain 83249 chr13 115169878 + 90765319 90766325 L1PA7 6471 + 5458 6469 42233 163 1 0 187 1 3 45 0 3 277 0 1 332 chain 35009 chr13 115169878 + 90770695 90771141 LTR19B 566 - 100 566 76179 12 5 4 237 1 0 67 1 0 31 1 0 21 0 5 35 0 19 35 chain 3566 chr13 115169878 + 90790151 90790189 MLT1D 503 + 462 500 214199 38 chain 144322 chr13 115169878 + 90794786 90796467 L1PA5 6144 - 0 1686 25424 155 2 3 94 2 1 5 0 1 73 2 1 510 0 4 486 0 1 352 chain 71943 chr13 115169878 + 90796467 90797262 L1PA5 6144 + 3643 4437 47500 466 1 0 328 chain 10777 chr13 115169878 + 90805431 90805552 L1PA5 6144 - 180 301 157085 121 chain 203263 chr13 115169878 + 90805564 90808305 HERVL-int 5654 - 2890 5654 18978 91 26 31 93 2 1 587 1 2 264 2 1 12 1 15 78 0 1 61 23 10 11 7 14 66 10 11 121 10 11 410 7 0 6 5 17 193 3 4 94 2 1 189 15 16 181 0 2 170 chain 37940 chr13 115169878 + 90809537 90809964 L1PA4 6152 - 9 436 72222 427 chain 6750 chr13 115169878 + 90812793 90812941 L1PA13 3608 + 3346 3485 179324 10 1 0 21 20 19 26 0 1 21 2 0 4 2 0 20 6 2 15 chain 43608 chr13 115169878 + 90857922 90858630 LTR66 600 - 0 600 64675 37 1 3 57 0 16 13 0 17 48 2 0 10 142 0 84 0 1 314 chain 28032 chr13 115169878 + 90860211 90860515 AluYa5 310 + 0 302 92884 132 2 0 170 chain 106424 chr13 115169878 + 90871850 90873072 L1PA5 6144 + 4918 6144 35148 468 0 3 599 0 1 155 chain 7349 chr13 115169878 + 90914991 90915079 MSTA 426 - 67 155 175098 88 chain 28448 chr13 115169878 + 90915297 90915596 AluYa5 310 - 11 310 91382 299 chain 25423 chr13 115169878 + 90937307 90937606 AluYc3 301 - 0 301 102583 43 0 1 142 1 2 113 chain 50313 chr13 115169878 + 90941604 90942191 LTR10C 591 - 0 591 58781 54 0 2 25 0 2 508 chain 55277 chr13 115169878 + 90955312 90956068 L1PA8 5853 - 0 808 55537 93 1 0 7 0 17 48 1 0 9 1 0 4 9 12 4 1 0 50 2 0 47 1 0 41 0 1 66 5 41 329 16 18 21 chain 21581 chr13 115169878 + 90962141 90962404 AluSc 308 + 41 304 121843 263 chain 2519 chr13 115169878 + 90967469 90967636 MER77 626 + 115 341 232911 23 1 83 12 111 88 20 chain 70112 chr13 115169878 + 90977387 90978142 L1PA2 6032 - 0 755 48346 755 chain 37371 chr13 115169878 + 90993464 90993921 L1PA7 6471 - 4 458 73002 294 3 0 160 chain 31336 chr13 115169878 + 90993921 90994303 L1P3 4156 - 968 1357 81919 82 6 12 12 1 2 281 chain 113430 chr13 115169878 + 91000671 91002031 LTR12C 1709 + 0 1709 33244 262 0 2 358 31 4 50 0 1 76 0 368 103 0 4 27 0 1 453 chain 46806 chr13 115169878 + 91027546 91028070 L1PA4 6152 + 5626 6151 61366 377 0 1 147 chain 22997 chr13 115169878 + 91048995 91049342 MER51B 395 + 0 384 115637 40 7 26 31 0 6 104 6 8 4 1 0 26 1 0 50 10 22 67 chain 5754 chr13 115169878 + 91086992 91087117 THE1B 368 + 244 368 187609 48 42 41 35 chain 92112 chr13 115169878 + 91108463 91109548 L1PA6 6164 + 5076 6161 38932 1085 chain 242483 chr13 115169878 + 91121437 91124412 L1PA7 6471 - 13 2986 16641 327 1 0 441 9 5 64 1 0 306 0 1 32 0 1 296 1 0 705 1 3 536 0 1 73 0 1 118 1 3 7 3 0 8 2 1 7 0 1 36 chain 51986 chr13 115169878 + 91124870 91125449 L1PA5 6144 - 12 591 57632 579 chain 21420 chr13 115169878 + 91140917 91141301 THE1D 372 + 0 372 122445 45 29 0 16 3 13 34 1 2 65 0 1 62 2 8 59 0 4 7 14 10 11 15 14 21 chain 3556 chr13 115169878 + 91145343 91145459 L1M3b 1512 - 968 1083 214410 6 1 0 31 40 41 12 7 6 19 chain 125077 chr13 115169878 + 91146890 91148492 LTR12C 1709 + 0 1709 29369 245 9 49 251 0 8 146 0 159 254 1 0 4 4 2 106 0 4 212 102 1 268 chain 8834 chr13 115169878 + 91148122 91148224 LTR12C 1709 + 1441 1542 161220 64 1 0 37 chain 22846 chr13 115169878 + 91160053 91160291 AluYb8 318 + 70 308 116366 238 chain 112324 chr13 115169878 + 91181302 91182551 L1PA3long 6157 - 0 1253 33584 112 0 1 145 0 1 364 0 2 628 chain 7117 chr13 115169878 + 91225126 91225224 L1MA4 2864 - 525 623 176631 5 3 0 83 0 3 7 chain 22138 chr13 115169878 + 91244175 91244533 MER61E 571 + 22 399 119630 60 8 21 20 20 2 88 6 30 34 1 0 37 8 9 76 chain 40583 chr13 115169878 + 91253432 91253887 L1PA5 6144 + 5675 6131 68463 398 0 1 57 chain 22299 chr13 115169878 + 91292988 91293278 AluSp 311 + 16 311 118914 219 2 3 35 5 9 29 chain 30338 chr13 115169878 + 91298527 91298928 MLT2A1 477 - 76 477 83812 17 7 1 210 0 4 26 1 2 23 0 1 117 chain 104631 chr13 115169878 + 91306031 91307185 L1PA3long 6157 + 5004 6157 35585 6 3 0 373 0 1 765 0 1 7 chain 82233 chr13 115169878 + 91311896 91313135 L1PA11 4918 + 3335 4567 42664 87 5 6 207 21 15 82 3 0 383 26 25 189 14 12 18 0 20 13 17 15 23 0 4 41 2 0 13 1 0 21 21 11 10 13 9 15 1 0 13 chain 543451 chr13 115169878 + 91316238 91322249 L1PA3long 6157 + 0 6147 2274 152 0 1 300 3 2 326 0 128 813 1 0 540 0 2 1213 1 2 729 0 2 135 0 3 5 0 1 1793 chain 22702 chr13 115169878 + 91335359 91335685 THE1A 353 + 0 341 117063 106 6 5 69 0 1 5 6 5 11 1 17 122 chain 29244 chr13 115169878 + 91355611 91355990 THE1C 375 - 0 375 87826 25 1 0 225 3 0 125 chain 25022 chr13 115169878 + 91358977 91359345 MLT2A1 477 + 8 382 104675 131 11 12 18 1 5 20 22 23 165 chain 24122 chr13 115169878 + 91382665 91383036 THE1A 353 + 2 353 109633 17 2 0 77 1 0 13 42 25 219 chain 38683 chr13 115169878 + 91383037 91383530 THE1A-int 1579 + 1 495 71172 402 2 1 70 0 2 19 chain 10349 chr13 115169878 + 91385990 91386179 MER47A 366 + 80 266 158911 78 0 1 20 6 8 30 31 25 24 chain 161817 chr13 115169878 + 91386540 91388571 L1PA7 6471 - 1 2058 23088 11 2 0 150 1 2 8 1 2 66 6 5 534 0 1 62 0 2 34 2 1 303 5 5 243 6 2 25 0 1 236 0 3 32 0 22 167 0 1 28 0 2 109 chain 26818 chr13 115169878 + 91388571 91388915 L1P3 4156 + 3797 4139 95832 310 2 0 6 1 0 9 1 2 15 chain 88670 chr13 115169878 + 91406362 91407970 L1PB1 5432 + 3934 5103 40122 435 0 5 107 0 1 4 7 6 105 460 18 17 7 3 70 0 2 396 chain 32996 chr13 115169878 + 91407039 91407477 MLT2A1 477 - 0 477 79222 49 3 43 180 0 1 30 8 5 5 0 1 163 chain 13856 chr13 115169878 + 91423695 91423861 MER4A1 472 - 306 472 145048 166 chain 16733 chr13 115169878 + 91460340 91460652 THE1C 375 - 78 375 136303 13 0 4 49 2 3 23 22 11 15 22 13 49 15 16 57 1 0 44 chain 504321 chr13 115169878 + 91465160 91471591 L1PA7 6471 + 3 6464 6580 176 7 8 129 5 12 98 1 2 286 4 3 82 3 0 1205 0 1 227 0 1 403 1 2 40 0 2 25 1 2 67 13 11 37 0 1 852 10 11 226 10 9 83 7 6 97 12 11 356 0 9 41 0 3 63 1 17 31 0 1 731 0 2 248 2 1 396 4 1 121 1 0 226 2 0 91 2 0 8 chain 13274 chr13 115169878 + 91488746 91488946 THE1B 368 - 0 200 147198 56 26 25 9 1 2 108 chain 28230 chr13 115169878 + 91491817 91492237 LTR7Y 441 + 0 431 92192 103 9 0 57 68 84 30 0 4 153 chain 287235 chr13 115169878 + 91492247 91495713 HERVH-int 3825 + 0 3825 14206 523 13 8 39 1 0 10 1 0 27 0 31 25 5 66 26 0 1 7 0 2 13 0 3 660 0 1 157 0 5 79 7 33 381 0 1 305 0 1 666 9 11 5 0 3 31 8 218 224 0 17 19 0 2 225 chain 28697 chr13 115169878 + 91496962 91497398 LTR7Y 441 + 0 441 90336 59 2 0 37 18 9 55 68 84 197 chain 39280 chr13 115169878 + 91500839 91501277 LTR7 482 - 13 482 70353 174 0 31 264 chain 292673 chr13 115169878 + 91502535 91506082 HERVH-int 3825 - 0 3825 13848 214 0 1 210 0 1 61 8 218 1109 0 4 291 4 31 243 0 1 312 0 4 346 1 0 51 1 0 9 21 0 26 4 25 12 1 0 25 3 0 13 1 0 14 33 5 19 1 0 10 1 0 25 0 56 266 0 11 212 chain 38047 chr13 115169878 + 91506098 91506532 LTR7 482 - 14 482 72062 173 0 31 117 0 3 144 chain 11916 chr13 115169878 + 91520995 91521192 Tigger2b 204 - 0 198 152532 49 2 0 10 20 21 9 1 0 37 0 1 21 0 2 48 chain 3908 chr13 115169878 + 91533607 91533651 L1PA7 6471 + 6277 6321 208732 44 chain 12400 chr13 115169878 + 91533652 91533799 L1PA7 6471 + 6321 6465 150635 138 3 0 6 chain 24551 chr13 115169878 + 91544353 91544654 L1P2 5180 - 3283 3584 107242 301 chain 23262 chr13 115169878 + 91550506 91550856 THE1D 372 + 0 355 114376 15 1 3 21 4 2 119 29 34 161 chain 55905 chr13 115169878 + 91583608 91584369 L1PA8 5853 + 5084 5853 55182 166 0 8 44 0 2 145 1 0 115 1 0 20 1 3 21 2 0 70 22 24 42 1 0 15 1 0 94 chain 29803 chr13 115169878 + 91609445 91609800 L1PA5 6144 + 5789 6144 85425 212 0 1 71 0 1 58 3 1 11 chain 31409 chr13 115169878 + 91613975 91614331 L1PA5 6144 + 5784 6140 81797 356 chain 5648 chr13 115169878 + 91622990 91623061 MER75B 242 + 166 237 188586 71 chain 123745 chr13 115169878 + 91630291 91634834 L1PA11 4918 + 3 4502 29793 17 0 1 21 2 0 34 6 3 36 1 0 13 2 0 53 1 0 5 0 1 26 10 7 52 2 0 4 0 1 47 7 8 516 18 10 17 2620 2598 88 6 7 58 0 1 54 9 11 56 22 20 309 1 0 47 0 4 134 0 8 56 4 0 11 0 1 54 25 14 69 2 0 12 2 1 14 chain 30285 chr13 115169878 + 91657850 91658165 AluYb8 318 + 0 315 83976 315 chain 117488 chr13 115169878 + 91690474 91691811 L1PA5 6144 + 4783 6120 31970 511 1 0 707 0 1 118 chain 30652 chr13 115169878 + 91717904 91718319 MER4A1 472 + 0 418 83115 230 10 11 150 10 12 15 chain 24987 chr13 115169878 + 91725734 91726087 THE1A 353 - 0 353 104877 118 2 1 5 0 1 26 1 0 92 2 1 39 4 6 64 chain 25206 chr13 115169878 + 91752706 91753005 AluSp 311 - 4 303 103706 299 chain 25303 chr13 115169878 + 91782593 91782939 THE1B 368 - 0 368 103214 49 5 13 54 1 0 78 1 0 53 0 1 53 8 23 44 chain 10983 chr13 115169878 + 91802353 91802499 THE1D 372 + 224 372 156262 59 6 8 81 chain 12242 chr13 115169878 + 91828242 91828375 L1PA5 6144 - 13 146 151244 133 chain 3798 chr13 115169878 + 91829496 91829542 MER58D 378 + 318 364 210424 46 chain 4865 chr13 115169878 + 91843644 91843768 L1MA4A 3247 - 77 194 196640 18 52 45 54 chain 83753 chr13 115169878 + 91882557 91883502 L1PA5 6144 - 595 1555 42011 119 0 15 826 chain 49726 chr13 115169878 + 91883510 91884066 L1PA5 6144 + 5586 6142 59210 556 chain 23553 chr13 115169878 + 91894523 91894801 AluY 311 + 5 287 112831 118 0 4 160 chain 3743 chr13 115169878 + 91895904 91896148 MLT1E3 631 - 61 316 211292 38 187 198 19 chain 4509 chr13 115169878 + 91939762 91939815 LTR37A 408 - 255 308 200689 53 chain 19889 chr13 115169878 + 91950942 91951304 THE1B 368 + 0 368 127522 102 13 15 60 23 16 16 22 34 63 23 22 40 chain 22749 chr13 115169878 + 92029464 92029723 AluY 311 + 36 295 116828 259 chain 7044 chr13 115169878 + 92062179 92062259 L1PA16 3655 - 118 198 177160 80 chain 22141 chr13 115169878 + 92063109 92063388 AluSc 308 + 27 291 119616 257 15 0 7 chain 36407 chr13 115169878 + 92068730 92069153 L1PA6 6164 - 15 445 74361 177 0 7 246 chain 19754 chr13 115169878 + 92077593 92077942 THE1C 375 + 0 355 127946 19 1 0 4 1 0 24 21 30 109 56 55 114 chain 513573 chr13 115169878 + 92085460 92091339 L1PA4 6152 - 0 6145 5824 6 0 5 1449 1 17 46 1 0 519 0 1 95 0 1 312 1 0 417 10 11 1373 0 1 146 4 32 299 5 0 261 1 4 566 23 24 82 6 5 165 0 217 91 chain 4399 chr13 115169878 + 92095672 92095720 MLT1B 390 + 294 342 201942 48 chain 12507 chr13 115169878 + 92101614 92101770 L1PA8 5853 - 0 154 150220 93 1 0 19 2 1 41 chain 6154 chr13 115169878 + 92110622 92110715 L1PB 1623 + 917 1009 183945 47 9 8 37 chain 40120 chr13 115169878 + 92110724 92111454 L1PB1 5432 + 4680 5422 69154 23 0 2 22 8 9 76 0 1 66 11 61 163 53 41 12 18 12 52 2 1 15 1 0 45 1 0 15 3 0 15 9 0 21 1 0 14 2 0 20 8 7 20 1 0 11 5 1 17 chain 84203 chr13 115169878 + 92140665 92141686 MER11C 1089 + 0 1073 41820 346 0 41 47 5 6 159 0 1 15 2 3 157 0 8 290 chain 20172 chr13 115169878 + 92153006 92153369 THE1B 368 + 0 368 126612 97 18 20 60 72 76 55 1 0 60 chain 101288 chr13 115169878 + 92153518 92154643 L1PA4 6152 - 18 1144 36445 783 0 1 342 chain 27560 chr13 115169878 + 92159560 92159924 THE1B 368 - 0 368 94469 139 0 1 55 2 1 127 0 6 26 2 0 13 chain 121467 chr13 115169878 + 92168399 92169928 THE1A-int 1579 - 43 1577 30546 133 4 0 7 5 9 57 0 1 1212 0 3 55 0 1 56 chain 35015 chr13 115169878 + 92174785 92175230 L1PA6 6164 - 10 459 76171 94 6 10 70 10 9 145 0 1 120 chain 45684 chr13 115169878 + 92204614 92205127 MER9a1 513 - 0 513 62331 513 chain 8252 chr13 115169878 + 92207772 92207876 LTR47A 437 + 320 424 169673 104 chain 28838 chr13 115169878 + 92208597 92209216 L1PB1 5432 + 4930 5423 89731 71 1 2 98 5 0 13 90 0 24 1 0 4 7 6 10 18 12 7 0 1 40 2 1 17 1 0 45 1 0 15 2 0 6 37 25 4 1 0 15 2 0 24 1 0 21 1 0 13 1 0 14 2 0 5 chain 11271 chr13 115169878 + 92238598 92238745 THE1D 372 - 1 148 155157 59 0 1 82 1 0 5 chain 20311 chr13 115169878 + 92252215 92252463 AluSg7 307 - 49 296 126203 126 1 0 121 chain 289608 chr13 115169878 + 92256204 92259340 L1PA2 6032 - 0 3135 14044 20 1 0 3115 chain 34502 chr13 115169878 + 92274046 92274533 MLT2A2 560 - 54 560 76901 15 0 1 22 17 22 33 3 14 72 9 8 14 1 3 96 0 1 205 chain 28311 chr13 115169878 + 92278934 92279264 L1PA5 6144 - 9 339 91901 330 chain 30108 chr13 115169878 + 92279265 92279583 AluYb8 318 - 0 318 84461 318 chain 13261 chr13 115169878 + 92323592 92323749 L1PA8A 6298 - 1720 1877 145660 157 chain 133075 chr13 115169878 + 92323749 92325444 L1PA8A 6298 + 4596 6290 27408 82 0 2 145 0 1 63 25 8 442 0 5 142 5 8 169 0 2 89 0 1 337 3 5 193 chain 54073 chr13 115169878 + 92363235 92363869 L1PA6 6164 + 5532 6161 56306 42 0 1 100 2 0 262 0 1 217 5 0 6 chain 184542 chr13 115169878 + 92383783 92386532 L1PA8 5853 - 0 2449 20542 92 5 4 13 9 8 128 2 0 44 1 0 121 17 15 377 0 1 36 1 3 22 5 12 268 0 1 343 0 1 116 307 0 242 2 1 45 1 2 57 21 22 305 0 1 89 0 1 5 2 1 73 chain 6754 chr13 115169878 + 92404167 92404419 MLT1B 390 - 7 254 179292 58 160 155 34 chain 21594 chr13 115169878 + 92411536 92411936 L1MA3 4352 - 45 418 121792 19 1 0 6 1 0 23 2 0 24 22 18 10 0 2 71 72 51 149 chain 25305 chr13 115169878 + 92434539 92434905 THE1D 372 - 0 372 103199 166 35 40 59 0 1 106 chain 49238 chr13 115169878 + 92454347 92454983 LTR12_ 688 - 0 688 59562 236 4 5 106 0 2 173 9 0 3 8 0 17 3 69 77 chain 78390 chr13 115169878 + 92481906 92482948 MER11C 1089 - 30 1089 44328 321 0 1 38 1 0 5 0 4 71 0 1 7 1 0 16 6 4 24 34 35 132 9 11 72 0 4 58 0 9 86 6 5 155 chain 30765 chr13 115169878 + 92482948 92483753 MLT2A1 477 - 19 477 82926 33 4 0 21 364 10 9 0 2 84 4 0 7 0 8 111 6 10 20 0 1 142 chain 70800 chr13 115169878 + 92483987 92484865 L1PA7 6471 - 3276 4135 48011 474 9 0 48 0 4 23 22 5 117 0 4 138 1 0 46 chain 270746 chr13 115169878 + 92484882 92488150 L1PA7 6471 + 3193 6469 15150 304 1 0 432 0 2 61 11 5 24 1 0 115 0 8 135 2 0 383 11 10 946 0 6 82 1 5 382 0 1 34 4 5 322 3 0 14 chain 57469 chr13 115169878 + 92503753 92504380 L1PA2 6032 - 0 628 54258 622 0 1 5 chain 8495 chr13 115169878 + 92513055 92513162 L1MA5A 2387 - 346 456 168321 5 0 3 102 chain 121412 chr13 115169878 + 92528475 92530042 THE1A-int 1579 + 0 1579 30561 35 0 2 132 2 1 5 0 1 50 0 1 81 0 1 331 1 0 173 0 3 167 7 8 68 0 4 351 0 2 92 14 13 58 chain 27532 chr13 115169878 + 92530042 92530398 THE1A 353 + 0 353 94570 111 1 0 83 1 0 8 1 0 151 chain 51641 chr13 115169878 + 92616153 92617496 L1PA5 6144 + 5518 6141 57869 89 718 0 508 0 1 19 3 0 6 chain 50258 chr13 115169878 + 92616253 92616960 LTR12D 1347 - 7 942 58820 57 0 4 85 0 200 174 1 2 79 24 0 22 1 18 109 1 0 22 2 33 130 chain 308473 chr13 115169878 + 92622892 92626382 L1PA4 6152 - 2174 5648 13070 805 3 4 478 1 0 4 0 1 1852 17 0 258 1 0 15 0 1 56 chain 193452 chr13 115169878 + 92626382 92628535 L1PA4 6152 + 3998 6151 19741 2080 1 0 49 0 1 23 chain 12524 chr13 115169878 + 92657207 92657390 MLT2A2 560 - 377 560 150143 32 4 5 69 8 7 70 chain 18082 chr13 115169878 + 92683610 92683847 L1PB1 5432 - 429 662 132644 190 13 9 34 chain 17891 chr13 115169878 + 92683848 92684675 L1PB1 5432 + 5031 5418 133129 72 407 5 6 3 0 24 1 0 4 5 4 12 5 1 9 12 10 42 2 1 14 2 1 36 5 0 9 1 0 15 2 0 6 15 7 18 7 4 15 2 0 24 1 0 19 6 5 10 1 0 8 1 0 6 chain 34784 chr13 115169878 + 92704521 92705003 LTR12 884 - 250 884 76498 258 2 0 32 1 158 112 12 10 31 9 8 25 chain 57687 chr13 115169878 + 92728800 92729562 MER4E1 777 + 0 767 54143 17 5 0 84 6 5 87 9 18 336 1 3 217 chain 20672 chr13 115169878 + 92771691 92771944 AluYf5 307 - 47 279 125068 103 1 0 25 20 0 104 chain 11579 chr13 115169878 + 92794315 92794459 L1PA6 6164 + 6020 6160 153985 133 4 0 7 chain 18290 chr13 115169878 + 92798783 92799196 L1PB1 5432 - 9 386 132101 11 2 0 5 4 3 13 1 0 21 1 0 8 86 69 12 1 0 60 2 1 52 16 10 12 1 0 32 1 0 11 3 0 53 1 0 4 chain 22572 chr13 115169878 + 92834876 92835143 AluY 311 + 39 304 117705 87 2 0 178 chain 45750 chr13 115169878 + 92855409 92855897 L1HS 6032 + 5538 6026 62275 488 chain 4686 chr13 115169878 + 92857530 92857695 MER77B 728 - 406 606 198688 43 96 131 26 chain 24835 chr13 115169878 + 92862008 92862456 MLT2A2 560 - 0 560 105696 6 0 4 35 0 2 7 6 4 76 9 20 16 96 194 16 1 0 180 chain 69382 chr13 115169878 + 92885912 92886694 L1PA4 6152 - 0 782 48651 782 chain 3056 chr13 115169878 + 92919963 92920094 MER58A 224 + 49 198 223892 26 82 100 23 chain 529723 chr13 115169878 + 92933021 92939130 L1PA5 6144 + 0 6126 4219 1840 0 5 348 1 0 118 1 3 746 0 1 195 0 4 86 1 0 156 1 0 166 8 7 672 0 2 738 0 1 86 2 0 119 1 5 10 0 3 319 0 1 495 chain 292778 chr13 115169878 + 92942616 92948349 L1PB1 5432 - 16 4098 13836 12 1 0 13 1 0 22 1 0 23 59 44 6 1 0 15 1 0 45 7 6 9 2 1 39 1 3 11 2 0 8 8 4 9 2 1 7 1 0 24 3 0 9 1357 5 290 1 0 8 3 11 168 0 2 8 0 4 63 2 1 28 5 9 120 0 2 339 1 0 99 0 1 52 0 1 156 28 0 34 0 2 36 23 22 173 0 4 252 5 4 376 8 0 252 2 0 60 1 0 17 2 0 5 3 10 126 321 0 106 6 7 7 1 0 154 0 1 5 1 0 31 0 1 27 0 61 205 1 0 4 0 1 144 1 0 63 0 4 80 0 1 60 1 0 8 1 0 61 chain 105996 chr13 115169878 + 92942958 92944305 LTR12C 1709 + 0 1709 35260 104 0 3 5 3 0 226 0 43 228 1 2 39 0 278 144 0 49 97 1 0 6 11 4 393 5 4 84 chain 134229 chr13 115169878 + 92948735 92950300 LTR12C 1709 + 0 1709 27162 837 1 0 274 1 0 6 2 0 107 0 4 119 0 13 116 0 131 102 chain 3484 chr13 115169878 + 92988209 92988249 THE1B-int 1605 - 1493 1533 215620 40 chain 34241 chr13 115169878 + 93026751 93027119 L1PA2 6032 + 5664 6032 77293 368 chain 37811 chr13 115169878 + 93032746 93033166 L1PA3long 6157 + 5706 6152 72397 214 0 26 206 chain 13731 chr13 115169878 + 93034282 93034603 L1PB1 5432 + 5127 5418 145502 9 1 0 7 20 15 11 2 0 39 1 0 12 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 18 13 6 2 0 23 2 1 20 1 4 10 1 0 14 chain 18881 chr13 115169878 + 93044542 93044878 L1PA14 3548 + 3147 3465 130422 67 8 7 82 1 0 29 1 0 10 14 10 27 4 2 12 1 0 5 1 0 12 5 4 41 6 0 10 chain 27475 chr13 115169878 + 93050417 93050703 AluYa5 310 + 17 303 94732 286 chain 4511 chr13 115169878 + 93064136 93064224 MADE1 96 - 0 96 200659 30 13 4 17 5 22 23 chain 3604 chr13 115169878 + 93082097 93082229 L1MA8 2339 + 2121 2249 213581 16 31 32 26 4 0 12 9 10 12 6 4 16 chain 43963 chr13 115169878 + 93097571 93098059 L1PA3long 6157 - 0 489 64250 7 0 1 481 chain 17644 chr13 115169878 + 93109279 93109559 L1PA16 3655 - 79 364 133860 98 9 12 26 0 1 18 31 32 98 chain 7630 chr13 115169878 + 93118085 93118370 L1MA7 2200 + 1871 2170 173349 79 2 1 12 157 173 23 1 0 11 chain 5773 chr13 115169878 + 93122637 93122705 L1PA8 5853 - 7 75 187411 68 chain 45325 chr13 115169878 + 93127371 93127865 L1PA3long 6157 - 1416 1909 62688 472 1 0 21 chain 129111 chr13 115169878 + 93127867 93129297 L1PA3long 6157 + 4723 6147 28290 145 6 0 1279 chain 4769 chr13 115169878 + 93144539 93144605 L1PA5 6144 + 5925 5992 197703 46 3 4 17 chain 12679 chr13 115169878 + 93144606 93144761 L1PA5 6144 + 5994 6144 149543 144 5 0 6 chain 521079 chr13 115169878 + 93169017 93175026 L1PA5 6144 + 65 6139 5044 519 9 1 232 0 5 95 0 1 236 1 4 223 0 49 91 0 1 443 1 0 471 0 1 1334 1 0 44 0 1 57 2 1 401 0 1 64 0 4 1052 0 10 733 chain 27204 chr13 115169878 + 93190717 93191048 L1PA7 6471 - 1 332 95576 147 17 17 167 chain 100056 chr13 115169878 + 93197182 93198291 L1PA4 6152 - 9 1118 36759 1109 chain 90191 chr13 115169878 + 93198291 93199323 L1PA4 6152 + 4013 5042 39577 130 2 0 157 2 1 741 chain 29321 chr13 115169878 + 93221182 93221500 L1PA3long 6157 - 0 318 87435 318 chain 31275 chr13 115169878 + 93240174 93240585 L1PA8 5853 - 0 404 82026 93 1 0 19 2 1 39 8 0 6 1 8 8 1 0 71 2 0 44 1 0 115 chain 17120 chr13 115169878 + 93257829 93258009 AluYb8 318 - 6 186 135257 180 chain 37953 chr13 115169878 + 93258340 93258802 L1PA5 6144 - 2 460 72206 7 4 0 133 2 3 13 1 0 302 chain 24881 chr13 115169878 + 93260068 93260463 Tigger2a 444 + 0 390 105456 30 2 0 5 15 18 51 7 13 81 0 6 54 9 0 91 9 0 41 chain 10099 chr13 115169878 + 93282837 93282950 L1PA7 6471 + 6352 6465 160095 113 chain 52729 chr13 115169878 + 93295576 93296140 L1PA2 6032 + 5465 6029 57171 564 chain 23681 chr13 115169878 + 93303079 93303367 L1PA8A 6298 - 12 319 112148 95 1 20 192 chain 29407 chr13 115169878 + 93311172 93311480 AluYa5 310 - 2 310 87035 308 chain 566215 chr13 115169878 + 93337814 93343845 L1HS 6032 - 0 6032 138 5668 0 1 363 chain 17626 chr13 115169878 + 93344745 93344945 L1PA3long 6157 + 5959 6157 133918 193 2 0 5 chain 330774 chr13 115169878 + 93347959 93352820 L1PA7 6471 - 1 4127 12171 9 2 0 6 0 5 204 0 3 148 1 2 214 4 5 253 1 0 943 1 5 176 1 0 315 3 0 180 739 1 60 6 18 83 6 4 1069 0 2 124 1 0 9 12 0 212 1 0 71 2 0 5 chain 63813 chr13 115169878 + 93350425 93351150 L1PA4 6152 - 0 731 51091 6 0 5 389 0 1 330 chain 4128 chr13 115169878 + 93365317 93365406 MLT1B 390 + 139 227 205535 31 29 28 29 chain 24034 chr13 115169878 + 93365563 93365877 AluY 311 + 0 298 110141 118 14 0 15 1 0 144 2 1 20 chain 206093 chr13 115169878 + 93393841 93396172 L1PA5 6144 - 0 2335 18784 259 0 1 73 0 1 535 0 4 649 4 1 687 0 1 124 chain 16631 chr13 115169878 + 93403821 93404010 L1PA5 6144 + 5955 6144 136581 189 chain 538142 chr13 115169878 + 93404730 93410738 L1PA3long 6157 + 0 6157 3125 152 0 1 460 0 2 161 0 128 47 0 8 426 0 1 53 2 1 166 0 1 1089 0 1 2206 1 2 1107 0 7 138 chain 21411 chr13 115169878 + 93431279 93431625 THE1B 368 - 0 368 122471 52 10 22 41 39 52 5 3 0 28 1 0 90 0 1 77 chain 39829 chr13 115169878 + 93441988 93442522 MLT2A2 560 - 8 560 69579 73 0 2 64 3 14 272 10 15 112 chain 368543 chr13 115169878 + 93444321 93448766 L1PA6 6164 + 1656 6159 11138 189 0 1 8 0 3 170 0 15 170 0 4 48 0 2 66 0 2 713 0 1 135 6 8 611 3 4 1076 0 1 284 4 9 120 8 26 678 4 5 104 0 4 41 2 0 5 chain 3857 chr13 115169878 + 93454681 93454722 L1PA6 6164 - 7 48 209481 41 chain 21087 chr13 115169878 + 93454722 93455041 L1PA4 6152 + 5662 5981 123583 144 68 68 107 chain 6324 chr13 115169878 + 93454866 93454934 L1PA4 6152 - 278 346 178333 68 chain 4361 chr13 115169878 + 93461933 93461995 Tigger1 2417 - 2168 2227 202444 51 3 0 8 chain 18173 chr13 115169878 + 93510369 93510657 THE1B 368 + 0 307 132399 40 0 5 73 2 3 48 1 0 21 7 10 16 17 28 63 chain 16988 chr13 115169878 + 93531075 93531276 L1PA5 6144 - 9 217 135624 144 0 7 57 chain 43896 chr13 115169878 + 93542714 93543217 L1P1 4361 - 646 1150 64220 204 0 1 299 chain 66326 chr13 115169878 + 93543217 93543982 L1PA4 6152 + 5388 6152 49937 97 0 1 168 9 0 349 0 1 34 0 1 102 0 5 6 chain 72136 chr13 115169878 + 93580184 93581029 L1PA7 6471 + 5615 6461 47412 85 0 2 683 1 0 76 chain 44490 chr13 115169878 + 93609868 93610580 MER50B 698 + 1 652 63592 74 9 0 89 1 2 38 65 33 40 15 14 137 20 0 53 2 1 58 0 1 111 chain 24842 chr13 115169878 + 93625410 93625694 L1PA4 6152 - 9 293 105669 284 chain 8999 chr13 115169878 + 93639230 93639357 THE1B 368 + 240 366 165609 66 7 6 54 chain 34497 chr13 115169878 + 93641117 93641544 L1PA7 6471 - 10 455 76914 9 0 1 143 9 11 27 0 1 215 0 14 24 chain 8688 chr13 115169878 + 93641557 93641656 L1PA7 6471 + 5893 5992 167257 99 chain 26768 chr13 115169878 + 93669823 93670199 THE1C 375 + 0 375 97095 130 8 10 33 12 9 162 0 1 4 1 0 26 chain 8429 chr13 115169878 + 93682981 93683091 MSTA 426 + 13 136 168688 35 0 14 69 1 0 5 chain 47517 chr13 115169878 + 93683095 93683784 LTR30 714 + 0 704 60829 224 17 30 189 7 18 31 5 0 131 23 0 10 10 30 28 1 0 13 chain 39355 chr13 115169878 + 93692255 93692802 HERVK14-int 1672 + 2 559 70247 28 1 0 11 5 0 47 1 0 49 5 4 26 0 2 131 16 19 10 0 11 61 0 2 156 chain 146739 chr13 115169878 + 93693925 93695685 HERV17-int 4347 + 12 3880 25049 15 1 0 52 1 0 60 1 0 75 8 8 55 1 0 50 0 430 596 0 1 114 6 0 243 0 11 338 0 1672 36 0 4 108 chain 3576 chr13 115169878 + 93696635 93696676 LTR14B 630 + 0 41 214038 41 chain 217389 chr13 115169878 + 93714869 93717258 L1PA3long 6157 + 3768 6157 18034 2389 chain 19648 chr13 115169878 + 93722333 93722597 THE1D 372 + 106 372 128256 75 8 10 34 1 0 102 1 2 43 chain 5077 chr13 115169878 + 93723217 93723406 L1PA15 4387 + 2987 3596 194327 34 96 97 26 1 420 32 chain 23534 chr13 115169878 + 93759843 93760144 L1PA4 6152 - 0 292 112935 156 1 0 9 11 12 40 8 0 38 1 0 37 chain 39813 chr13 115169878 + 93767276 93767783 MER9a3 513 + 1 513 69608 17 0 2 23 1 2 132 0 1 78 7 6 144 3 5 102 chain 13623 chr13 115169878 + 93780024 93780176 L1PA3long 6157 - 5 157 145890 152 chain 30209 chr13 115169878 + 93791598 93792018 L1PA8 5853 - 0 419 84165 93 1 0 19 15 14 39 2 1 8 2 1 70 2 0 16 0 6 24 1 0 128 chain 60774 chr13 115169878 + 93800483 93801216 L1PA7 6471 + 5701 6468 52436 83 2 37 316 0 1 321 2 0 9 chain 121308 chr13 115169878 + 93845470 93847031 THE1B-int 1605 + 2 1599 30598 430 0 25 29 1 0 93 1 2 172 1 2 265 4 0 316 2 1 56 6 7 80 0 1 60 0 13 45 chain 28097 chr13 115169878 + 93855250 93855834 L1PB1 5432 - 2 585 92658 4 1 0 8 2 0 17 10 8 23 1 0 22 2 0 16 9 6 10 26 14 6 2 0 8 16 14 38 1 0 13 7 6 48 19 13 12 8 6 24 5 0 7 1 4 80 7 9 54 0 36 77 chain 65160 chr13 115169878 + 93858770 93859529 LTR17 781 + 0 781 50495 327 1 0 382 1 23 41 0 1 7 chain 4267 chr13 115169878 + 93891646 93891695 L1PB3 3668 + 1002 1051 203656 49 chain 18080 chr13 115169878 + 93903074 93903427 THE1B 368 - 0 359 132648 118 78 81 34 26 28 34 1 2 62 chain 7229 chr13 115169878 + 93916951 93917150 MER2 342 - 122 337 175895 77 85 98 10 1 2 19 0 2 7 chain 3394 chr13 115169878 + 93931394 93931452 MER5A 189 - 2 64 217196 39 8 12 11 chain 3662 chr13 115169878 + 93933515 93933555 MLT1A0 366 - 65 105 212546 40 chain 13346 chr13 115169878 + 93975042 93975206 L1PA7 6471 - 1 163 146903 4 1 0 101 1 0 57 chain 16598 chr13 115169878 + 93976104 93976402 L1MA2 4263 + 3818 4105 136676 99 61 58 79 11 4 10 1 0 37 chain 46880 chr13 115169878 + 93993383 93994159 L1PB2 3958 - 120 895 61326 55 1 2 6 1 0 8 0 1 12 2 0 36 0 5 31 2 1 64 1 0 34 0 1 42 9 8 81 27 23 54 6 1 12 1 0 54 6 23 19 19 8 54 1 0 4 0 2 64 4 3 37 0 1 29 chain 5208 chr13 115169878 + 94003708 94003769 L1MA5A 2387 + 2230 2291 192938 61 chain 98788 chr13 115169878 + 94015393 94016476 L1PA3long 6157 - 4 1087 37077 1083 chain 24475 chr13 115169878 + 94039424 94039778 L1PA8 5853 - 0 347 107676 93 1 0 16 24 23 20 0 1 4 1 0 17 2 1 24 1 0 46 2 0 44 1 0 58 chain 23810 chr13 115169878 + 94041477 94041772 AluY 311 + 9 298 111413 124 7 1 164 chain 87726 chr13 115169878 + 94078491 94079448 L1PA3long 6157 - 0 956 40475 259 1 0 697 chain 96323 chr13 115169878 + 94092954 94094052 L1PA5 6144 - 5 1105 37725 769 1 3 328 chain 7395 chr13 115169878 + 94100558 94100651 Tigger3a 397 + 229 322 174805 93 chain 145601 chr13 115169878 + 94105737 94107603 LTR12C 1709 - 0 1709 25240 481 0 4 106 4 2 4 1 0 199 76 0 76 1 0 131 82 0 193 7 8 505 chain 2852 chr13 115169878 + 94106576 94106607 LTR12C 1709 - 600 631 227839 31 chain 2465 chr13 115169878 + 94106816 94106844 LTR12C 1709 - 844 872 124408 28 chain 202240 chr13 115169878 + 94140229 94142507 L1PA5 6144 - 5 2287 19050 146 5 0 6 1 6 1636 0 4 484 chain 553133 chr13 115169878 + 94142771 94148790 L1PA2 6032 - 0 6030 1054 5871 0 11 148 chain 237536 chr13 115169878 + 94193283 94195903 L1PA3long 6157 - 3 2627 16905 250 1 0 590 0 4 1203 0 1 576 chain 50423 chr13 115169878 + 94218823 94219438 L1PA7 6471 - 4 620 58694 151 7 8 457 chain 3750 chr13 115169878 + 94238743 94238840 L1PREC2 3366 + 2926 3006 211140 18 44 27 35 chain 10043 chr13 115169878 + 94243142 94243252 L1PA2 6032 + 5922 6032 160359 110 chain 6641 chr13 115169878 + 94275492 94275668 L1MA6 2487 - 260 434 180153 57 57 55 37 12 12 13 chain 31832 chr13 115169878 + 94279257 94279633 L1PA7 6471 - 3 376 81118 7 4 0 145 0 1 220 chain 4690 chr13 115169878 + 94295606 94295657 MER34 540 - 44 95 198637 51 chain 22782 chr13 115169878 + 94366134 94366437 L1P4 1494 + 1085 1385 116668 184 2 0 81 1 0 35 chain 298246 chr13 115169878 + 94369879 94373599 L1PA7 6471 - 12 3799 13520 99 4 6 44 1 2 593 0 3 10 0 2 54 7 8 13 5 4 358 9 31 78 6 7 192 1 0 88 1 0 4 0 2 273 9 10 4 1 0 330 0 1 243 0 1 158 0 11 13 0 4 207 5 4 32 0 1 46 0 1 24 0 1 397 0 4 159 1 0 163 0 13 70 0 1 18 chain 10869 chr13 115169878 + 94423862 94423985 L1PA3long 6157 + 6034 6157 156704 123 chain 3867 chr13 115169878 + 94445439 94445551 MER105 203 + 0 153 209351 16 36 76 24 6 7 30 chain 27928 chr13 115169878 + 94474733 94475082 L1PA7 6471 - 33 383 93244 117 7 0 7 0 7 145 0 1 73 chain 29502 chr13 115169878 + 94492028 94492406 L1PB 1623 - 880 1257 86629 259 1 0 24 0 1 60 2 1 32 chain 17542 chr13 115169878 + 94492410 94492669 L1PB 1623 + 112 364 134150 5 1 0 48 10 7 16 7 4 77 1 0 46 0 1 48 chain 64858 chr13 115169878 + 94496724 94497429 L1PA2 6032 - 829 1534 50458 705 chain 74887 chr13 115169878 + 94497429 94498242 L1PA2 6032 + 5212 6025 46068 813 chain 20382 chr13 115169878 + 94531305 94531530 L1HS 6032 - 4724 4949 125420 225 chain 131019 chr13 115169878 + 94531530 94532979 L1PA3long 6157 + 4709 6157 27858 1236 0 1 206 2 0 5 chain 23868 chr13 115169878 + 94557032 94557300 L1PA3long 6157 - 1 269 111096 268 chain 32993 chr13 115169878 + 94566329 94566697 L1PA4 6152 - 9 376 79228 251 1 0 116 chain 20703 chr13 115169878 + 94617420 94617666 AluY 311 + 38 285 124955 94 0 1 152 chain 9633 chr13 115169878 + 94630386 94630526 MLT1D 503 + 256 396 162425 62 10 11 24 1 0 43 chain 4754 chr13 115169878 + 94633144 94633199 LTR16A1 462 + 376 431 197870 55 chain 40235 chr13 115169878 + 94651288 94651776 L1PA7 6471 - 4 492 68972 102 1 0 227 0 1 158 chain 3267 chr13 115169878 + 94660605 94660644 Charlie2b 853 - 32 71 219650 39 chain 5389 chr13 115169878 + 94690080 94690164 MER3 215 + 0 85 191093 54 11 12 19 chain 9518 chr13 115169878 + 94694198 94694327 MSTA 426 + 0 130 162983 96 7 8 26 chain 27288 chr13 115169878 + 94720326 94720686 THE1B 368 - 11 368 95315 165 3 1 17 3 2 172 chain 121928 chr13 115169878 + 94720686 94722263 THE1B-int 1605 - 0 1605 30406 276 10 11 824 29 31 12 3 28 423 chain 26125 chr13 115169878 + 94749474 94749782 AluY 311 + 0 304 99505 123 5 1 180 chain 6106 chr13 115169878 + 94749830 94749906 L1MB2 1706 + 1618 1694 184371 76 chain 119362 chr13 115169878 + 94755140 94756545 L1PA5 6144 - 2 1407 31275 7 4 0 133 7 10 5 3 0 518 1 2 173 1 0 18 1 5 534 chain 68471 chr13 115169878 + 94756545 94757314 L1PA5 6144 + 3953 4726 49058 211 0 1 87 0 3 471 chain 50569 chr13 115169878 + 94759934 94760781 L1PB1 5432 + 4610 5427 58604 16 3 0 178 5 4 4 0 1 36 3 4 250 1 2 9 3 0 24 2 0 9 1 0 11 5 1 8 2 0 53 2 1 16 13 12 24 0 7 16 60 45 5 2 0 24 1 0 21 1 0 13 2 1 17 2 0 5 chain 9689 chr13 115169878 + 94763574 94763726 L1PA8 5853 + 5702 5852 162149 36 5 4 18 11 10 82 chain 33710 chr13 115169878 + 94817221 94817893 L1PB1 5432 + 4886 5427 78078 214 23 0 14 1 0 2 77 0 22 1 0 10 0 1 7 18 12 52 2 1 15 1 0 44 1 0 16 2 0 6 15 6 19 24 19 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 5142 chr13 115169878 + 94820802 94820893 ORSL 269 - 8 91 193638 56 5 0 6 12 9 12 chain 16030 chr13 115169878 + 94833468 94833684 MER11A 1151 + 937 1151 138278 4 0 1 52 5 4 87 1 0 24 1 0 42 chain 23146 chr13 115169878 + 94838064 94838334 AluY 311 + 32 303 114908 100 0 1 170 chain 4915 chr13 115169878 + 94846485 94846630 MER53 195 + 40 193 196107 25 65 74 38 1 0 16 chain 14276 chr13 115169878 + 94846690 94846996 L1PB1 5432 + 5146 5422 143630 12 15 9 53 2 1 16 1 0 44 1 0 15 55 39 13 2 0 22 1 0 21 1 0 13 4 3 15 chain 6136 chr13 115169878 + 94861053 94861158 AluJr 308 + 166 263 184110 13 24 16 68 chain 30849 chr13 115169878 + 94894172 94894524 L1PA5 6144 - 2 350 82771 7 4 0 341 chain 26034 chr13 115169878 + 94894524 94894813 L1PA5 6144 + 5510 5799 99883 289 chain 28779 chr13 115169878 + 94903286 94903721 L1PA8 5853 + 5419 5853 89982 58 0 1 79 8 7 90 14 17 8 1 0 5 5 4 48 7 6 18 1 0 93 chain 299845 chr13 115169878 + 94928750 94932509 L1PA8A 6298 - 7 3774 13434 98 9 15 326 1 3 122 0 1 182 0 3 43 6 9 603 0 12 9 22 5 352 1 0 4 0 1 142 5 6 483 12 13 408 3 0 5 3 8 34 1 0 6 7 0 269 0 1 163 1 0 219 0 2 220 chain 14808 chr13 115169878 + 94933448 94933664 L1PA8 5853 - 0 212 141914 92 2 1 17 1 0 42 10 9 11 1 0 40 chain 23386 chr13 115169878 + 94934444 94934796 THE1C 375 - 39 375 113730 62 18 5 56 5 6 10 2 3 11 1 0 65 9 4 77 0 1 36 chain 24224 chr13 115169878 + 94945472 94945838 THE1D 372 + 5 372 109065 36 1 0 10 9 0 149 32 43 129 chain 56943 chr13 115169878 + 94954974 94955718 LTR17 781 - 7 781 54566 33 9 31 270 20 21 92 1 0 170 0 1 17 0 3 20 0 4 112 chain 14122 chr13 115169878 + 94968100 94968312 MER30 238 + 0 236 144132 24 1 2 4 1 0 79 0 29 55 3 0 9 5 3 31 chain 16219 chr13 115169878 + 95015141 95015356 L1PA8 5853 - 0 212 137698 93 1 0 19 2 1 40 0 1 11 1 0 9 1 0 38 chain 541342 chr13 115169878 + 95024455 95030445 L1PA3long 6157 + 0 6142 2613 152 0 1 624 1 129 1486 0 4 781 0 12 109 0 2 1859 0 5 978 chain 29880 chr13 115169878 + 95084674 95085113 MER57A1 433 + 0 433 85167 64 2 8 8 5 0 43 1 0 166 0 1 7 5 6 70 18 9 41 0 1 9 chain 24111 chr13 115169878 + 95116611 95116921 AluSc5 308 + 0 308 109691 53 13 11 244 chain 50697 chr13 115169878 + 95150938 95151598 LTR12 884 + 0 884 58505 25 1 0 228 5 96 29 2 0 170 0 103 93 1 34 106 chain 19191 chr13 115169878 + 95152446 95152781 THE1B 368 - 0 368 129554 56 7 6 67 30 63 41 28 29 106 chain 31690 chr13 115169878 + 95174363 95174802 MLT2A1 477 + 0 477 81340 15 0 4 150 4 1 11 0 1 17 0 1 94 11 3 15 0 2 71 4 0 15 0 45 32 chain 513851 chr13 115169878 + 95178905 95185045 L1PA6 6164 + 0 6160 5795 392 20 21 36 8 0 115 7 6 183 0 1 33 0 17 924 1 0 257 1 0 191 0 1 155 0 2 842 3 0 5 1 4 6 0 1 113 1 2 20 0 9 141 2 0 3 5 0 220 1 0 1491 0 1 123 0 5 840 chain 6994 chr13 115169878 + 95201903 95201976 tRNA-Phe-TTY 73 - 0 73 177513 73 chain 31172 chr13 115169878 + 95234808 95235229 MLT2A1 477 + 17 477 82218 151 5 2 215 4 0 6 5 47 29 0 4 6 chain 30336 chr13 115169878 + 95251124 95251441 AluYb9 318 - 1 318 83832 317 chain 12680 chr13 115169878 + 95288405 95288699 THE1B 368 - 62 368 149536 66 126 136 38 0 2 64 chain 157140 chr13 115169878 + 95289832 95291603 L1PA5 6144 - 12 1789 23707 446 0 2 334 0 2 117 0 1 69 0 1 805 chain 5145 chr13 115169878 + 95339140 95339264 MLT2C1 407 + 81 203 193605 22 2 0 40 37 38 18 1 0 4 chain 39193 chr13 115169878 + 95370816 95371258 L1PA5 6144 - 5 444 70468 8 3 0 431 chain 22912 chr13 115169878 + 95372877 95373159 AluSg 306 + 11 297 116048 255 0 4 27 chain 66483 chr13 115169878 + 95381092 95381851 L1PA6 6164 + 4102 4862 49880 546 0 1 213 chain 110428 chr13 115169878 + 95381858 95383138 L1PA6 6164 + 4870 6156 34089 1132 0 1 4 9 11 46 1 4 88 chain 65661 chr13 115169878 + 95384077 95384812 L1PA5 6144 - 0 735 50267 735 chain 56253 chr13 115169878 + 95384812 95385443 L1P1 4361 + 3290 3922 54993 392 0 1 239 chain 4209 chr13 115169878 + 95386205 95386271 MLT2D 439 + 371 432 204429 19 6 1 41 chain 94859 chr13 115169878 + 95471237 95472304 L1PA5 6144 - 4 1075 38131 839 0 4 228 chain 224357 chr13 115169878 + 95488653 95491745 L1PB1 5432 + 2374 5422 17631 125 0 1 18 0 1 300 1 0 6 0 1 187 0 2 295 3 4 130 2 0 158 4 1 103 0 1 31 15 0 9 6 0 73 0 4 147 1 2 75 1 2 435 26 24 117 3 0 128 0 6 48 5 8 142 9 10 135 1 2 9 5 0 24 1 0 4 31 25 45 1 0 8 2 1 16 1 0 43 1 0 12 75 58 20 1 0 21 1 0 11 5 4 16 chain 537777 chr13 115169878 + 95523039 95529486 L1PA5 6144 + 0 6144 3187 702 1 0 47 20 21 662 0 1 222 8 7 94 0 1 738 1 0 10 10 1 565 1 0 374 0 1 872 301 0 547 1 2 409 0 4 14 1 0 834 2 5 11 chain 11023 chr13 115169878 + 95559892 95560067 MER2B 336 - 19 192 156116 14 17 14 23 1 2 120 chain 5127 chr13 115169878 + 95572922 95572983 MER63D 473 + 148 209 193814 61 chain 2865 chr13 115169878 + 95579349 95579379 MIR 256 + 83 113 227581 30 chain 50513 chr13 115169878 + 95582820 95583972 L1PA15 4387 - 31 866 58639 27 22 15 44 5 3 50 1 0 17 4 0 15 1 0 14 0 1 40 1 0 14 16 22 161 1 0 14 391 86 23 2 0 289 chain 13608 chr13 115169878 + 95616949 95617101 L1PA3long 6157 + 6005 6157 145947 152 chain 11713 chr13 115169878 + 95651550 95651749 MER2 342 + 140 335 153413 39 12 7 28 11 14 91 1 0 3 1 0 13 chain 24695 chr13 115169878 + 95664162 95664455 AluSp 311 - 18 311 106464 293 chain 10558 chr13 115169878 + 95671567 95671709 MER5A 189 - 42 183 158015 109 1 0 32 chain 21244 chr13 115169878 + 95685916 95686194 AluSp 311 - 12 291 123041 116 0 1 50 1 0 74 9 10 28 chain 25131 chr13 115169878 + 95723163 95723510 THE1B 368 + 7 368 104123 37 0 15 117 1 0 15 1 3 52 0 3 5 8 5 45 2 0 64 chain 382259 chr13 115169878 + 95742629 95747924 L1PB1 5432 + 59 5413 10688 50 11 1 241 2 0 227 47 52 59 26 0 13 0 8 45 1 0 215 2 3 291 0 3 6 21 17 105 1 0 7 2 0 5 23 11 127 0 3 50 0 5 17 5 6 14 8 9 411 0 86 199 11 10 6 0 1 124 0 1 9 5 0 100 3 40 206 1 0 171 15 16 182 1 0 315 0 22 178 7 1 423 0 12 8 1 0 178 1 0 219 2 0 62 0 2 59 0 24 332 0 1 5 1 0 51 58 11 21 1 0 11 17 12 11 3 1 50 2 1 16 2 1 43 1 0 12 6 3 15 9 0 16 8 5 14 2 0 23 2 1 21 1 0 13 1 0 9 chain 33062 chr13 115169878 + 95757135 95757645 MER1A 529 - 3 529 79111 59 20 24 50 3 6 182 6 0 85 23 40 39 3 1 40 chain 10866 chr13 115169878 + 95794234 95794358 L1PB1 5432 + 4857 4981 156714 124 chain 8665 chr13 115169878 + 95794358 95794467 L1PB1 5432 + 4986 5099 167396 92 0 4 17 chain 4626 chr13 115169878 + 95794518 95794610 L1PB1 5432 + 5146 5231 199339 10 6 2 11 3 1 50 2 1 10 chain 3549 chr13 115169878 + 95794621 95794661 L1PB1 5432 + 5240 5280 214551 40 chain 6697 chr13 115169878 + 95794706 95794825 L1PB1 5432 + 5311 5422 179708 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 18491 chr13 115169878 + 95797198 95797585 L1PA15 4387 + 3791 4203 131529 21 4 6 15 13 7 19 11 38 36 1 0 109 31 36 22 8 7 18 19 18 8 0 1 33 1 0 18 chain 16577 chr13 115169878 + 95841145 95841365 L1PA8 5853 - 0 215 136717 92 2 1 19 2 1 50 1 0 13 2 0 39 chain 28173 chr13 115169878 + 95841376 95841673 AluYd8 298 - 0 297 92393 297 chain 94283 chr13 115169878 + 95850218 95851375 L1PA8 5853 + 4698 5853 38270 86 0 1 221 0 1 475 14 14 68 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 81 0 3 9 chain 5465 chr13 115169878 + 95862597 95862662 U13 108 + 1 66 190355 65 chain 3114 chr13 115169878 + 95885508 95885556 MER2 342 + 164 213 222664 29 4 5 15 chain 14096 chr13 115169878 + 95885565 95885753 L1PA16 3655 + 3402 3588 144235 167 0 1 9 3 0 9 chain 23783 chr13 115169878 + 95911368 95911664 AluSp 311 + 10 307 111575 116 0 6 164 5 0 11 chain 72420 chr13 115169878 + 95920274 95921257 LTR5_Hs 974 + 0 974 47294 166 20 19 4 0 1 106 0 1 54 0 1 66 0 1 40 0 4 50 8 1 145 3 2 117 0 7 41 3 0 12 27 15 121 chain 9494 chr13 115169878 + 95926057 95926176 AluYf4 310 - 4 117 163106 7 6 0 106 chain 96577 chr13 115169878 + 95958582 95959663 L1PA4 6152 + 5069 6151 37673 210 0 1 714 0 1 43 0 1 57 1 0 36 2 0 14 0 1 4 chain 11157 chr13 115169878 + 95960678 95960814 MER4A1 472 + 54 189 155608 81 1 0 54 chain 22661 chr13 115169878 + 95961039 95961377 LTR7 482 - 17 482 117265 81 0 2 76 0 4 38 8 40 57 28 117 50 chain 5732 chr13 115169878 + 95963086 95963149 HY3 101 - 2 65 187817 63 chain 79460 chr13 115169878 + 95969093 95970059 LTR13A 966 + 0 966 43845 128 0 1 255 1 0 357 11 12 18 1 0 195 chain 24148 chr13 115169878 + 95972795 95973088 AluY 311 + 0 297 109480 52 0 1 17 0 3 224 chain 7562 chr13 115169878 + 95988362 95988455 HY4 93 - 0 93 173781 93 chain 98768 chr13 115169878 + 96002500 96003580 L1PA3long 6157 + 5076 6157 37085 704 0 1 376 chain 19897 chr13 115169878 + 96013754 96015729 LTR8 732 + 68 692 127491 39 4 8 53 629 0 109 1036 309 22 0 3 38 2 0 43 chain 7932 chr13 115169878 + 96022819 96022954 LTR35 598 - 0 134 171431 37 7 6 39 1 0 35 5 6 11 chain 24645 chr13 115169878 + 96023138 96023437 AluSp 311 - 17 311 106752 6 5 0 288 chain 6672 chr13 115169878 + 96035533 96035626 L1MB3 1562 + 1433 1524 179887 5 2 0 86 chain 23049 chr13 115169878 + 96036885 96037180 AluSp 311 - 7 302 115395 164 1 2 31 1 0 98 chain 8501 chr13 115169878 + 96039427 96039556 L1MB3 1562 - 155 282 168282 21 7 6 29 1 0 71 chain 187531 chr13 115169878 + 96079818 96082079 L1PA7 6471 - 2 2255 20290 10 2 0 139 7 2 279 8 0 112 0 12 51 0 23 220 5 0 369 23 1 612 1 0 423 chain 82121 chr13 115169878 + 96082551 96083448 MER11D 897 - 0 897 42718 897 chain 45455 chr13 115169878 + 96116367 96116886 L1PA5 6144 - 9 530 62543 185 0 1 308 0 1 26 chain 39400 chr13 115169878 + 96126193 96126736 MER1A 529 - 0 529 70163 68 16 18 172 17 0 96 3 4 171 chain 182520 chr13 115169878 + 96140639 96143528 L1PB1 5432 - 8 3981 20739 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 19 9 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 38 32 12 1 0 11 19 0 106 12 4 62 311 0 46 25 5 65 4 0 191 18 25 67 0 1 320 1 0 446 4 1457 219 0 1 75 0 9 268 6 9 95 0 1 112 7 10 40 0 1 17 chain 15627 chr13 115169878 + 96164107 96164282 L1PA3long 6157 - 2 177 139503 175 chain 14630 chr13 115169878 + 96177471 96177697 L1MB7 1623 - 457 686 142486 117 1 0 11 2 1 41 17 23 12 1 0 24 chain 21969 chr13 115169878 + 96197524 96197810 AluSp 311 + 9 293 120357 167 0 6 104 8 0 7 chain 200068 chr13 115169878 + 96217883 96220190 L1PA6 6164 - 2 2315 19207 6 4 0 6 0 3 680 4 5 146 0 4 356 0 1 892 1 2 212 chain 36332 chr13 115169878 + 96226001 96226435 L1PA6 6164 - 19 458 74462 137 1 6 296 chain 10458 chr13 115169878 + 96231278 96231403 MER85 139 + 4 139 158452 86 0 10 39 chain 8167 chr13 115169878 + 96289950 96290054 MLT1B 390 + 236 340 170133 104 chain 21515 chr13 115169878 + 96308251 96308620 THE1D 372 - 0 365 122085 38 1 0 141 66 60 73 6 7 38 0 2 6 chain 8911 chr13 115169878 + 96316604 96316743 MER1B 344 - 9 158 166081 49 10 24 42 4 0 34 chain 67324 chr13 115169878 + 96321919 96322844 MER11A 1151 - 0 1140 49519 13 0 1 62 0 2 78 18 19 4 1 0 47 0 9 28 0 81 98 0 11 7 8 9 138 6 7 93 0 1 113 0 2 23 12 15 59 0 4 69 1 100 47 chain 3968 chr13 115169878 + 96334304 96334349 MSTD 398 - 13 58 207862 45 chain 177951 chr13 115169878 + 96342240 96344368 SVA_D 2077 - 0 2070 21166 640 0 49 302 1 0 48 0 2 88 47 7 24 3 1 8 51 0 147 3 0 33 0 3 689 3 1 12 13 0 16 chain 2393 chr13 115169878 + 96343319 96343366 SVA_D 2077 - 775 822 109840 47 chain 2037 chr13 115169878 + 96343401 96343441 SVA_D 2077 - 857 897 109840 40 chain 23110 chr13 115169878 + 96365138 96365448 THE1C 375 + 65 375 115096 159 0 1 47 10 10 68 1 0 25 chain 77962 chr13 115169878 + 96377929 96378781 L1PA4 6152 - 0 852 44539 852 chain 552473 chr13 115169878 + 96387070 96393091 L1PA2 6032 - 0 6031 1134 13 2 0 145 1 0 1640 0 2 1068 1 0 1954 0 12 490 0 1 451 1 0 255 chain 18375 chr13 115169878 + 96414311 96414525 AluSp 311 + 77 291 131862 214 chain 6265 chr13 115169878 + 96420328 96420406 L1MB2 1706 - 688 774 183045 56 0 8 22 chain 107441 chr13 115169878 + 96434064 96435347 L1PA7 6471 - 1 1280 34851 11 0 4 315 0 1 515 0 6 88 20 0 112 0 4 176 0 1 46 chain 25105 chr13 115169878 + 96455523 96455813 AluSp 311 - 21 311 104258 290 chain 266867 chr13 115169878 + 96480391 96483543 L1PA5 6144 + 2947 6142 15342 302 0 3 257 2 1 1067 1 42 712 0 2 193 11 12 463 1 2 132 4 0 7 chain 89300 chr13 115169878 + 96492307 96493469 L1PA8 5853 + 4703 5853 39889 303 0 1 135 8 0 343 2 0 5 0 2 53 0 1 18 1 0 44 2 0 66 32 31 35 2 1 19 2 1 92 chain 106801 chr13 115169878 + 96497436 96498668 SVA_B 1603 - 6 1554 35033 196 3 10 329 0 318 110 8 0 438 5 4 143 chain 26126 chr13 115169878 + 96505165 96505538 THE1C 375 + 0 375 99500 85 1 2 92 0 2 5 22 20 144 1 0 5 0 2 18 chain 58273 chr13 115169878 + 96521142 96521792 L1PA4 6152 - 0 650 53825 7 0 2 235 1 0 16 1 0 390 chain 14711 chr13 115169878 + 96532149 96532353 L1PA7 6471 - 3 204 142232 140 1 0 10 11 10 12 1 0 29 chain 3995 chr13 115169878 + 96550344 96550414 L2a 937 + 330 394 207448 8 0 6 10 12 0 40 chain 136698 chr13 115169878 + 96556553 96558066 L1PA3long 6157 - 0 1515 26692 11 1 4 140 1 0 1360 chain 507407 chr13 115169878 + 96559064 96566508 L1PA6 6164 + 0 6162 6372 138 0 20 36 1 2 4 1 0 36 0 2 280 0 2 47 1 0 112 0 7 75 5 13 13 0 17 99 0 4 815 1342 0 480 0 1 82 0 1 44 1 3 264 0 1 316 0 1 274 0 1 40 0 3 463 1 0 497 0 1 4 1 0 1209 0 3 76 1 0 128 0 1 282 0 3 76 15 1 25 8 9 6 1 0 145 chain 68256 chr13 115169878 + 96560743 96561478 L1PA2 6032 - 543 1279 49137 61 0 1 674 chain 47759 chr13 115169878 + 96561478 96562001 L1PA2 6032 + 5491 6014 60648 523 chain 309355 chr13 115169878 + 96568633 96572935 L1PA11 4918 + 7 4502 13028 32 6 4 35 4 1 36 1 0 13 2 0 52 6 5 28 2 0 5 2 1 240 8 9 55 8 13 7 0 1 59 1 0 152 2 1 98 1 2 37 35 1 48 0 20 369 0 1 17 1 0 33 0 9 26 3 12 23 7 15 62 1 0 169 0 1 4 2 1 109 0 1 19 0 4 166 0 1 153 0 3 31 66 68 74 17 168 138 0 3 179 0 1 90 0 1 34 0 1 36 0 2 105 1 0 127 0 1 175 0 14 102 1 0 260 0 3 226 0 7 169 7 1 137 0 4 14 9 12 52 1 0 4 11 9 66 2 0 14 1 0 14 chain 133290 chr13 115169878 + 96579924 96581448 SVA_B 1603 - 6 1603 27373 527 0 37 43 1 0 14 1 0 922 1 39 15 chain 3375 chr13 115169878 + 96583381 96583420 LTR12C 1709 - 832 871 217588 39 chain 7756 chr13 115169878 + 96583466 96583603 LTR12C 1709 - 800 936 172564 42 31 30 64 chain 4353 chr13 115169878 + 96589522 96589574 MER58A 224 - 11 63 202553 52 chain 43154 chr13 115169878 + 96606508 96607129 MER4B 649 + 0 629 65225 59 0 1 200 0 1 88 25 37 33 35 30 113 1 0 67 chain 4532 chr13 115169878 + 96607181 96607235 Tigger4b 360 + 306 360 200437 54 chain 23183 chr13 115169878 + 96615026 96615380 THE1B 368 - 0 368 114759 45 31 30 84 9 7 8 0 2 17 1 0 55 0 1 64 0 15 40 chain 99192 chr13 115169878 + 96616915 96618007 L1PA3long 6157 + 5063 6157 36974 245 1 5 602 1 0 225 1 0 17 chain 128023 chr13 115169878 + 96628872 96630442 L1PA8 5853 + 4259 5853 28560 167 0 4 383 1 0 192 0 1 4 2 0 96 0 7 170 0 2 279 1 0 44 2 0 50 3 22 8 1 0 46 8 7 19 1 0 93 chain 48302 chr13 115169878 + 96631972 96632846 L1PB1 5432 + 4535 5422 60240 63 7 11 19 0 2 32 1 0 128 27 26 96 12 21 46 9 4 86 16 47 22 1 0 7 0 2 9 22 17 47 2 1 16 1 0 44 1 0 15 1 0 4 2 0 9 15 7 10 25 20 24 1 0 22 2 1 11 1 0 18 chain 59208 chr13 115169878 + 96642989 96643694 L1PA7 6471 - 10 719 53278 152 0 1 360 1 0 145 0 4 47 chain 27837 chr13 115169878 + 96644447 96644864 L1P4 1494 - 690 1117 93570 85 0 6 109 11 14 28 5 9 7 4 0 110 10 11 48 chain 38618 chr13 115169878 + 96653347 96653803 LTR7 482 + 0 482 71268 16 6 0 248 1 32 69 1 2 115 chain 10469 chr13 115169878 + 96656797 96656943 L1PA3long 6157 - 22 156 158395 29 19 0 6 0 7 92 chain 29334 chr13 115169878 + 96678910 96679224 AluYb8 318 - 4 318 87383 314 chain 22243 chr13 115169878 + 96681116 96681413 AluY 311 + 0 291 119153 26 1 0 97 9 4 164 chain 3153 chr13 115169878 + 96687300 96687335 L1PA11 4918 + 3629 3664 221884 35 chain 17704 chr13 115169878 + 96687339 96687563 L1PA11 4918 + 3691 3915 133693 173 2 0 5 0 2 44 chain 46093 chr13 115169878 + 96687563 96688230 L1PA11 4918 + 3918 4567 61950 290 0 3 117 5 0 65 2 1 81 2 0 12 2 1 20 4 0 9 8 3 12 9 7 13 3 2 13 chain 167192 chr13 115169878 + 96694337 96698730 L1PB1 5432 + 12 4458 10265 12 2 1 166 0 9 76 4 3 127 2 0 66 0 1 79 3 1 49 0 1 53 6 13 399 4 0 88 0 1 247 0 6 135 0 4 155 1 0 50 1 0 5 0 1 25 4 8 235 3 0 26 1 2 157 0 7 147 7 11 38 0 1 30 1 4 43 2 0 51 1 0 4 0 5 271 10 12 5 2 0 49 0 3 30 5 7 67 3 2 135 0 8 576 4 1 11 0 5 226 0 1 241 0 2 27 2 1 224 chain 429422 chr13 115169878 + 96698743 96703738 L1PA5 6144 + 0 6144 9322 553 1 0 547 11 1145 547 0 2 264 0 1 101 1 0 10 3 0 88 0 2 226 0 4 230 0 1 233 0 3 1337 2 1 705 0 3 75 7 12 54 chain 37526 chr13 115169878 + 96703738 96704724 L1PB1 5432 + 4461 5430 10265 148 0 4 8 2 0 59 0 3 16 0 6 19 0 1 84 2 0 182 0 5 98 7 12 8 1 0 23 1 0 9 1 0 12 5 1 10 2 0 51 2 1 16 1 0 36 8 7 16 1 0 4 19 8 19 2 0 5 1 0 9 9 5 24 1 0 21 1 0 13 1 0 16 2 0 6 1 0 4 chain 5681 chr13 115169878 + 96720115 96720221 MLT1C 463 + 22 125 188293 27 26 23 53 chain 22671 chr13 115169878 + 96720280 96720642 THE1B 368 - 0 368 117208 75 7 6 69 67 59 100 0 15 44 chain 71469 chr13 115169878 + 96759885 96760938 MER11B 1079 + 0 1046 47706 457 18 17 18 34 22 4 0 1 75 0 1 99 10 17 7 1 0 23 10 0 17 27 29 7 0 2 24 5 6 53 0 1 37 0 1 88 0 1 39 chain 4728 chr13 115169878 + 96762977 96763031 MSTB 430 - 376 430 198180 54 chain 59754 chr13 115169878 + 96767575 96768304 L1PA8A 6298 - 28 759 52958 131 6 7 192 0 3 286 2 0 112 chain 30427 chr13 115169878 + 96770945 96771263 AluYb8 318 - 0 318 83628 318 chain 17920 chr13 115169878 + 96778036 96778232 L1PA3long 6157 - 0 196 133058 196 chain 20483 chr13 115169878 + 96778650 96778967 MER83C 372 - 7 320 125673 171 6 38 25 42 6 73 chain 164728 chr13 115169878 + 96796896 96798759 L1PA4 6152 - 0 1851 22694 90 0 1 50 7 0 320 6 0 355 0 1 706 1 0 328 chain 10399 chr13 115169878 + 96835872 96836095 L1MB3 1562 + 1282 1480 158700 65 8 7 53 60 37 22 1 0 14 chain 24964 chr13 115169878 + 96849388 96849712 THE1A 353 - 0 353 104986 114 2 30 99 1 0 21 1 0 4 0 1 68 0 2 14 chain 113660 chr13 115169878 + 96849717 96851164 THE1A-int 1579 - 5 1579 33185 224 0 1 88 1 2 11 1 109 44 2 15 339 0 1 570 0 1 64 5 7 98 chain 24754 chr13 115169878 + 96851164 96851490 THE1A 353 - 0 353 106149 111 5 33 99 1 0 110 chain 239588 chr13 115169878 + 96856437 96859666 L1PA11 4918 + 1351 4578 16794 276 0 1 39 0 5 135 6 7 56 1 0 107 0 2 96 0 5 152 0 2 17 0 1 42 0 1 4 7 10 13 0 3 27 0 1 426 12 13 146 0 13 269 0 1 144 0 1 163 0 4 133 17 17 564 0 1 28 0 4 52 13 7 54 2 1 9 4 3 7 0 1 54 8 6 10 5 4 20 4 0 9 58 24 13 1 0 13 2 0 11 chain 2933 chr13 115169878 + 96890295 96890379 L2a 937 + 133 203 226443 22 38 24 24 chain 5203 chr13 115169878 + 96915206 96915278 Charlie4a 502 - 66 136 193002 17 2 0 53 chain 529410 chr13 115169878 + 96978441 96984462 L1PA4 6152 - 9 6152 4255 468 1 0 4516 0 3 256 1 129 32 4 3 23 12 5 132 1 0 421 0 1 154 chain 10719 chr13 115169878 + 96986451 96986725 MSTB 430 + 26 383 157326 73 124 207 77 chain 8848 chr13 115169878 + 96997867 96997992 MER1B 344 - 0 130 166386 62 11 16 52 chain 2747 chr13 115169878 + 97050134 97050163 MIRc 230 - 97 126 229523 29 chain 41710 chr13 115169878 + 97099637 97100247 LTR9B 643 + 0 643 67016 117 0 24 59 7 6 15 4 5 169 2 14 20 20 19 24 1 0 25 0 1 90 17 15 40 chain 76093 chr13 115169878 + 97138128 97138989 L1PA4 6152 - 9 869 45425 468 1 0 392 chain 34801 chr13 115169878 + 97146407 97146802 L1PA4 6152 + 5751 6152 76472 197 0 1 192 0 5 6 chain 3273 chr13 115169878 + 97155053 97155098 LTR82A 830 - 479 536 219545 38 0 12 7 chain 394420 chr13 115169878 + 97172328 97177242 L1P2 5180 - 238 5178 10306 61 0 4 491 5 14 372 3 0 485 1 0 381 0 1 240 0 1 376 0 1 170 0 1 20 20 6 125 0 1 402 2 0 246 1 0 104 2 0 42 0 1 94 0 10 394 0 4 97 0 15 218 1 0 50 1 0 66 24 6 122 0 24 46 8 7 50 1 0 43 7 6 143 chain 46281 chr13 115169878 + 97229272 97229845 L1PA7 6471 - 1 572 61785 151 5 6 179 1 2 165 5 1 67 chain 27394 chr13 115169878 + 97229845 97230179 L1PA7 6471 + 5554 5894 94989 69 0 4 71 0 2 194 chain 25514 chr13 115169878 + 97273447 97273825 THE1D 372 + 0 372 102165 40 12 0 121 25 26 9 0 3 76 0 1 63 2 0 10 0 3 20 chain 124212 chr13 115169878 + 97305465 97306917 L1PA7 6471 - 4 1454 29619 9 3 0 416 0 1 213 0 1 206 1 0 604 chain 23915 chr13 115169878 + 97340185 97340477 L1PA5 6144 + 5848 6138 110841 117 4 0 17 7 9 147 chain 35020 chr13 115169878 + 97350318 97350711 L1PA4 6152 - 18 411 76160 393 chain 120412 chr13 115169878 + 97350711 97352104 L1PA4 6152 + 4338 5747 30900 131 6 11 6 3 0 152 0 7 659 0 4 170 0 4 252 2 1 12 chain 20037 chr13 115169878 + 97352353 97352715 THE1B 368 - 0 368 127019 18 3 0 5 14 17 20 1 0 68 51 55 7 0 2 59 5 6 111 chain 29932 chr13 115169878 + 97389597 97389911 AluYb8 318 + 0 314 85015 314 chain 25539 chr13 115169878 + 97417310 97417609 AluYb8 318 - 2 302 102058 157 0 1 142 chain 15237 chr13 115169878 + 97421551 97421722 L1PA2 6032 - 2 173 140672 171 chain 15850 chr13 115169878 + 97423220 97423405 L1PA5 6144 - 363 548 138801 185 chain 24979 chr13 115169878 + 97423405 97423683 L1PA5 6144 + 5864 6142 104911 278 chain 529950 chr13 115169878 + 97425124 97431569 L1PA7 6471 + 1 6456 4194 131 38 40 234 2 0 103 14 6 2027 0 1 95 11 0 89 0 1 22 1 5 234 1 0 366 0 1 41 1 0 172 10 9 249 0 1 628 0 14 195 0 4 80 1 2 863 0 3 93 1 2 181 0 1 562 chain 21328 chr13 115169878 + 97451395 97451624 L1PA3long 6157 - 529 758 122765 229 chain 38018 chr13 115169878 + 97451624 97452045 L1PA3long 6157 + 5736 6157 72105 421 chain 16099 chr13 115169878 + 97457396 97457754 THE1D 372 + 0 372 138066 62 44 43 30 87 91 122 0 11 13 chain 24325 chr13 115169878 + 97492475 97492814 THE1C 375 + 0 375 108518 87 0 1 97 11 10 52 1 38 64 1 0 26 chain 24345 chr13 115169878 + 97505602 97505948 THE1B 368 + 1 356 108396 168 1 0 26 3 0 6 29 42 113 chain 20020 chr13 115169878 + 97513598 97513959 Tigger2 2703 + 2280 2657 127085 84 3 0 3 3 0 11 21 30 51 1 0 21 1 0 1 6 0 16 0 2 48 13 28 15 0 7 37 1 0 12 2 0 11 chain 519417 chr13 115169878 + 97570655 97577119 L1PA7 6471 + 3 6465 5220 200 0 4 203 27 4 947 2 1 672 0 1 14 0 4 185 0 1 89 29 11 87 0 3 205 1 2 88 0 1 555 0 1 268 7 11 270 33 44 443 0 2 1195 1 0 106 0 4 124 5 9 154 10 13 97 3 0 444 chain 18567 chr13 115169878 + 97624496 97624833 L1PA8 5853 + 5524 5853 131315 40 1 0 44 2 0 50 5 0 22 1 0 7 73 74 92 chain 16787 chr13 115169878 + 97631448 97631646 L1PA7 6471 + 5282 5481 136140 91 0 1 107 chain 18057 chr13 115169878 + 97631646 97631867 L1PA7 6471 + 5482 5703 132704 221 chain 63743 chr13 115169878 + 97631868 97632640 L1PA7 6471 + 5703 6467 51127 612 13 5 147 chain 8919 chr13 115169878 + 97659699 97659816 MLT1A0 366 - 51 167 166042 111 1 0 5 chain 24546 chr13 115169878 + 97668786 97669093 AluY 311 + 10 309 107272 292 8 0 7 chain 93366 chr13 115169878 + 97675777 97677094 L1PREC2 3366 + 1436 2737 38547 227 4 0 145 0 1 28 9 17 106 0 1 34 1 0 4 0 1 19 0 1 254 2 1 149 0 1 26 65 40 72 10 12 162 chain 24052 chr13 115169878 + 97692092 97692382 L1PA7 6471 - 1 291 110032 290 chain 513349 chr13 115169878 + 97701436 97707264 L1PA5 6144 - 0 6101 5847 11 3 1 613 0 1 230 2 0 1292 1 3 218 0 24 74 0 2 273 0 8 142 0 5 526 0 4 357 0 5 157 0 4 642 0 2 20 0 2 500 0 1 719 0 217 48 chain 12059 chr13 115169878 + 97712404 97712625 L1MA5A 2387 + 2113 2300 151950 44 2 0 30 1 0 24 50 19 48 0 1 16 1 0 5 chain 7776 chr13 115169878 + 97714443 97714539 MSTB1 431 - 0 97 172442 12 0 1 84 chain 23821 chr13 115169878 + 97730154 97730433 AluY 311 + 1 297 111354 150 8 25 121 chain 5819 chr13 115169878 + 97732233 97732452 L1MA4 2864 + 2615 2804 186949 39 121 92 11 0 1 7 3 1 38 chain 11822 chr13 115169878 + 97732628 97732783 L1PA8 5853 + 5698 5851 152934 41 3 2 19 1 0 91 chain 7386 chr13 115169878 + 97744076 97744182 L1MA4 2864 + 2579 2686 174863 11 0 4 76 7 4 12 chain 163909 chr13 115169878 + 97750359 97752246 L1PA6 6164 - 13 1909 22820 684 0 1 169 0 4 404 1 0 4 0 1 522 0 4 103 chain 24501 chr13 115169878 + 97755825 97756182 THE1B 368 + 0 368 107540 48 0 2 119 1 0 22 17 18 4 0 1 10 11 19 125 chain 430782 chr13 115169878 + 97807652 97812362 L1PA3long 6157 - 0 4714 9294 961 0 2 527 0 2 3222 chain 16151 chr13 115169878 + 97814171 97814530 MSTA 426 - 6 418 137895 74 85 123 10 1 0 7 5 1 75 20 41 60 6 5 16 chain 32362 chr13 115169878 + 97818647 97819155 MLT2A1 477 + 0 477 80252 58 11 13 93 9 6 212 77 47 48 chain 25960 chr13 115169878 + 97839879 97840179 AluYf4 310 + 0 299 100174 210 2 1 88 chain 23982 chr13 115169878 + 97859559 97859914 THE1B 368 - 0 366 110434 73 2 1 85 40 37 113 0 15 42 chain 33653 chr13 115169878 + 97859916 97860342 THE1B-int 1605 - 0 448 78166 214 1 24 134 2 1 75 chain 18306 chr13 115169878 + 97885431 97885632 L1PA5 6144 - 6 207 132063 201 chain 12828 chr13 115169878 + 97903430 97903663 L1MA3 4352 + 4129 4352 148936 41 1 4 55 5 1 30 2 0 22 1 0 6 1 0 29 1 0 7 10 6 22 chain 30314 chr13 115169878 + 97904085 97904403 AluYb8 318 - 0 318 83876 318 chain 2642 chr13 115169878 + 97920226 97920256 MER5A 189 - 35 65 231132 30 chain 90575 chr13 115169878 + 97923736 97924890 L1PA8A 6298 - 8 1149 39443 103 24 23 158 0 8 168 2 0 260 0 2 56 27 0 22 2 1 197 0 8 65 1 0 4 0 1 65 chain 8798 chr13 115169878 + 97950338 97950440 L1PA3long 6157 + 6054 6157 166656 95 0 1 7 chain 7704 chr13 115169878 + 98015265 98015355 5S 121 - 31 121 172905 90 chain 2871 chr13 115169878 + 98069556 98069588 MIR 256 - 108 140 227512 32 chain 9228 chr13 115169878 + 98090721 98090844 MER85 139 - 0 134 164404 23 3 0 7 0 14 90 chain 10223 chr13 115169878 + 98161548 98161694 L1PA16 3655 - 441 577 159502 11 1 0 62 9 0 63 chain 26451 chr13 115169878 + 98171135 98171525 MSTA 426 - 10 419 98229 210 5 0 11 9 15 48 29 47 78 chain 89328 chr13 115169878 + 98176697 98177723 L1PA4 6152 + 5109 6141 39872 192 4 10 830 chain 29712 chr13 115169878 + 98188294 98188712 MLT2A1 477 - 13 477 85789 36 1 45 98 0 3 78 6 7 17 0 1 7 15 12 160 chain 104449 chr13 115169878 + 98197347 98199001 LTR12C 1709 + 0 1707 35626 122 0 1 5 1 0 336 33 25 305 0 318 5 3 1 22 0 3 72 68 13 223 202 0 174 1 0 82 chain 23531 chr13 115169878 + 98201866 98202193 Tigger2 2703 + 2295 2666 112957 24 0 18 26 0 9 43 5 17 44 0 2 29 0 4 85 1 0 70 chain 27743 chr13 115169878 + 98210929 98211399 L1PB1 5432 - 9 444 93890 5 1 0 14 1 0 12 1 0 22 1 0 24 2 0 15 1 0 4 2 0 19 25 12 15 1 0 44 1 0 16 2 1 53 17 11 9 1 0 8 2 1 24 3 0 9 1 2 115 chain 4710 chr13 115169878 + 98213802 98213870 L1PA2 6032 - 18 81 198391 22 6 1 40 chain 31687 chr13 115169878 + 98214080 98214523 MLT2A2 560 + 0 550 81343 104 1 2 75 1 0 88 3 0 33 10 119 80 4 5 44 chain 29155 chr13 115169878 + 98235399 98235711 AluYa5 310 - 0 310 88284 217 2 0 93 chain 417883 chr13 115169878 + 98240094 98245236 HERVL-int 5654 - 0 5190 9587 23 6 8 135 0 3 30 0 3 9 1 3 81 0 3 131 0 1 1225 0 1 70 0 2 12 8 11 283 10 12 819 0 1 344 0 3 154 14 11 146 4 5 35 0 9 168 1 8 179 0 2 4 0 1 107 3 7 212 5 0 172 2 3 141 0 1 113 0 4 495 chain 227441 chr13 115169878 + 98245310 98248253 L1P3 4156 + 69 3097 17453 29 24 74 45 31 45 59 1 0 290 0 1 84 41 42 508 1 10 85 2 1 5 0 1 311 13 19 348 2 0 103 1 0 237 0 4 107 0 1 90 0 2 59 2 3 465 chain 18981 chr13 115169878 + 98248261 98248486 MLT2A1 477 - 230 454 130157 43 0 1 23 0 1 8 3 0 148 chain 366933 chr13 115169878 + 98254127 98258653 L1PA6 6164 + 0 6161 11190 395 9 8 92 16 15 76 3 0 318 2 6 106 1 1606 34 6 3 36 15 37 320 2 1 129 21 9 79 0 3 413 4 7 185 0 2 71 6 8 177 0 1 225 0 4 626 0 1 427 1 4 515 9 10 151 0 5 56 chain 547011 chr13 115169878 + 98259913 98266009 L1PA3long 6157 + 6 6152 1829 296 0 1 394 7 0 13 0 7 743 0 4 546 0 9 1211 0 26 872 0 1 225 0 4 1650 0 5 139 chain 316646 chr13 115169878 + 98294969 98298800 HERVH-int 3825 + 0 3825 12735 534 5 0 36 1 0 9 2 1 9 4 0 14 7 1 13 4 21 18 68 0 35 1 21 61 11 10 646 9 0 41 1 0 215 4 31 74 4 5 297 0 5 988 0 19 702 0 1 18 chain 35467 chr13 115169878 + 98303161 98303653 LTR9B 643 - 141 643 75599 32 10 13 251 7 6 64 0 2 40 2 0 25 4 12 57 chain 28190 chr13 115169878 + 98304679 98305081 LTR7 482 - 8 482 92342 41 13 14 111 1 2 27 2 33 21 0 1 109 8 46 69 chain 41638 chr13 115169878 + 98307518 98308059 MLT2A2 560 - 2 560 67109 145 0 11 193 12 15 5 3 0 128 0 6 55 chain 29590 chr13 115169878 + 98309573 98309949 THE1C 375 - 0 375 86233 25 1 0 350 chain 8517 chr13 115169878 + 98319149 98319451 MER63D 473 - 171 472 168213 64 85 89 6 3 0 53 74 72 17 chain 563487 chr13 115169878 + 98319662 98325694 L1HS 6032 - 2 6032 254 873 2 0 2966 1 0 920 0 1 1270 chain 542235 chr13 115169878 + 98382667 98388689 L1PA3long 6157 + 0 6156 2466 152 0 1 617 1 0 4 1 130 142 1 0 934 0 1 1569 0 1 1580 0 1 1010 0 3 11 chain 2435 chr13 115169878 + 98398010 98398052 MLT1C 463 + 107 150 233906 14 4 5 24 chain 25867 chr13 115169878 + 98401162 98401557 MER50 708 + 305 701 100579 29 49 48 54 7 9 256 chain 5474 chr13 115169878 + 98406915 98406980 MLT1A1 405 - 11 77 190272 51 0 1 14 chain 188564 chr13 115169878 + 98416905 98418966 L1PA3long 6157 - 10 2073 20187 1883 1 3 177 chain 32651 chr13 115169878 + 98419816 98420261 MLT2A1 477 - 1 477 79761 36 7 43 12 4 0 181 0 1 23 0 1 9 4 1 169 chain 438908 chr13 115169878 + 98420263 98425761 HERVL-int 5654 - 2 5654 9085 221 1 2 105 10 14 7 0 7 71 0 1 170 1 0 299 0 1 17 0 17 340 0 17 98 22 23 107 12 36 6 0 1 471 0 2 594 1 3 80 6 50 150 1 2 533 0 3 76 12 13 320 1 0 115 11 14 109 5 11 49 8 15 62 0 4 312 7 6 70 0 6 67 6 8 108 0 2 837 chain 32528 chr13 115169878 + 98425771 98426205 MLT2A1 477 - 10 477 79981 27 21 55 180 0 1 24 0 1 8 3 0 171 chain 86354 chr13 115169878 + 98426748 98427764 SVA_A 1864 + 33 1862 41018 30 0 1 18 12 1 207 0 4 169 0 819 580 chain 78439 chr13 115169878 + 98445473 98446549 MER11A 1151 - 4 1151 44298 60 1 0 165 0 9 54 10 44 12 1 0 56 0 4 53 1 0 8 12 15 98 16 15 11 0 7 6 5 0 86 0 1 54 0 1 83 0 11 184 21 31 79 chain 14239 chr13 115169878 + 98458097 98458272 L1PA4 6152 + 5974 6152 143760 21 7 10 147 chain 6103 chr13 115169878 + 98476080 98476335 MER33 330 + 17 279 184388 39 142 152 45 9 6 8 0 1 5 1 0 6 chain 25655 chr13 115169878 + 98480695 98480971 L1PA2 6032 - 0 276 101468 276 chain 4285 chr13 115169878 + 98497248 98497297 MADE1 96 + 45 94 203409 49 chain 25257 chr13 115169878 + 98503372 98503735 THE1D 372 - 1 372 103440 31 1 0 116 1 0 29 13 15 78 3 1 26 4 14 61 chain 18018 chr13 115169878 + 98512696 98512919 AluSp 311 + 83 305 132808 49 1 0 173 chain 98321 chr13 115169878 + 98515361 98516604 THE1A-int 1579 - 0 1271 37216 19 1 0 56 1 0 122 1 0 587 1 0 4 0 1 133 0 3 46 7 28 21 0 6 54 0 1 190 chain 26865 chr13 115169878 + 98526736 98527278 MER4A 717 - 0 716 96760 8 1 0 33 0 1 28 113 171 71 19 38 28 14 0 39 0 6 35 0 1 58 7 111 88 chain 3475 chr13 115169878 + 98527772 98527830 L1MC3 1789 + 1191 1242 215726 44 7 0 7 chain 39975 chr13 115169878 + 98533007 98533598 MER4B 649 + 0 641 69353 115 23 26 12 8 59 17 0 1 35 2 0 158 8 5 11 13 14 35 0 1 75 1 0 69 1 0 8 chain 6871 chr13 115169878 + 98538088 98538169 U13_ 108 + 27 108 178423 81 chain 50597 chr13 115169878 + 98540592 98541212 PRIMA4_LTR 623 - 0 623 58579 238 1 2 24 0 1 95 2 3 260 chain 3784 chr13 115169878 + 98555386 98555431 MLT1A1 405 - 26 71 210614 45 chain 19281 chr13 115169878 + 98568650 98569041 THE1C 375 - 0 375 129286 20 6 5 152 105 95 51 8 5 34 2 0 13 chain 31651 chr13 115169878 + 98583671 98584050 L1PA4 6152 + 5773 6141 81402 233 11 0 135 chain 26348 chr13 115169878 + 98595664 98595973 L1PA7 6471 + 6161 6467 98619 298 3 0 8 chain 14101 chr13 115169878 + 98601622 98603596 THE1B 368 + 2 368 144217 123 0 1 46 1771 162 34 chain 11239 chr13 115169878 + 98613754 98614017 L1MB7 1623 - 338 571 155263 16 46 31 15 4 0 9 36 27 13 2 0 122 chain 47823 chr13 115169878 + 98617026 98617591 L1PA8 5853 + 5275 5834 60608 168 0 1 120 1 0 46 2 0 69 1 0 14 1 0 47 2 1 19 1 0 74 chain 29794 chr13 115169878 + 98636221 98636531 AluYa5 310 - 0 310 85482 310 chain 8893 chr13 115169878 + 98647460 98647653 L1PB1 5432 - 9 196 166169 4 1 0 15 1 0 5 0 15 14 1 0 20 6 4 14 1 0 6 2 0 18 16 6 6 2 0 14 2 1 45 chain 12345 chr13 115169878 + 98704265 98704433 Tigger1 2417 + 2079 2238 150848 17 8 0 74 2 0 63 0 1 4 chain 13982 chr13 115169878 + 98704444 98704622 MER75B 242 - 11 188 144643 5 1 0 172 chain 63070 chr13 115169878 + 98713053 98713840 MER4E1 777 + 0 777 51420 14 0 1 43 1 0 109 2 1 79 1 0 292 14 6 232 chain 31462 chr13 115169878 + 98714119 98714572 LTR7B 505 - 15 505 81714 103 0 1 21 1 0 42 0 1 42 0 2 26 7 27 28 6 13 69 0 10 19 0 2 51 9 4 29 chain 28749 chr13 115169878 + 98715936 98716237 AluYb8 318 - 17 318 90130 301 chain 29125 chr13 115169878 + 98717166 98717474 AluYa5 310 - 2 310 88435 308 chain 29699 chr13 115169878 + 98721248 98721558 AluYb8 318 - 8 318 85838 310 chain 98046 chr13 115169878 + 98727711 98729091 LTR12C 1709 - 0 1709 37265 84 1 0 299 14 13 85 20 13 97 35 32 78 0 278 216 10 9 34 6 7 78 5 48 102 0 27 51 14 7 151 chain 2688 chr13 115169878 + 98747950 98747989 L1MB2 1706 - 396 435 230359 7 1 0 23 0 1 8 chain 31217 chr13 115169878 + 98751763 98752163 MER83 447 + 0 404 82128 75 0 1 35 7 10 283 chain 52332 chr13 115169878 + 98761114 98761805 LTR12_ 688 - 0 688 57410 397 13 27 118 24 8 113 1 0 25 chain 10037 chr13 115169878 + 98761880 98762067 L1MA5A 2387 + 2113 2263 160395 43 3 1 24 2 0 36 3 0 15 30 0 31 chain 6480 chr13 115169878 + 98774948 98775031 MLT1A 405 - 0 83 181391 83 chain 24401 chr13 115169878 + 98800355 98800639 AluSp 311 + 5 289 108069 284 chain 7844 chr13 115169878 + 98846713 98846833 MER85 139 + 5 139 172050 53 4 7 27 4 15 32 chain 17803 chr13 115169878 + 98856176 98856446 7SK 245 - 5 245 133396 28 2 0 146 40 12 54 chain 19794 chr13 115169878 + 98863464 98863763 MER1B 344 + 35 344 127838 57 7 11 28 5 4 127 16 23 59 chain 28428 chr13 115169878 + 98898338 98898646 AluYf4 310 - 0 310 91478 253 0 2 55 chain 29259 chr13 115169878 + 98917565 98917872 AluYa5 310 - 3 310 87744 307 chain 43571 chr13 115169878 + 98923661 98924271 L1PA8 5853 - 0 579 64720 93 1 0 19 2 1 51 1 0 10 5 4 64 3 1 48 1 0 63 1 2 45 29 4 174 chain 2089 chr13 115169878 + 98944764 98944888 MER3 215 - 129 180 237748 13 77 0 9 6 10 19 chain 37881 chr13 115169878 + 99021621 99022036 L1PA3long 6157 - 0 415 72307 415 chain 23591 chr13 115169878 + 99029301 99029578 AluSc 308 + 27 303 112625 104 1 0 172 chain 8824 chr13 115169878 + 99053163 99053278 MER85 139 + 11 136 166527 79 1 11 35 chain 16677 chr13 115169878 + 99077024 99077263 MER30 238 + 0 236 136471 110 13 0 16 0 13 60 3 0 37 chain 17001 chr13 115169878 + 99138262 99138469 L1PA7 6471 + 6262 6470 135593 190 1 0 4 0 2 12 chain 2734 chr13 115169878 + 99163524 99163631 L1MD1 2063 + 1744 1841 229681 27 61 51 19 chain 43614 chr13 115169878 + 99186520 99187208 LTR8 732 + 0 685 64666 27 2 0 73 0 1 183 4 3 95 105 106 161 2 0 36 chain 47135 chr13 115169878 + 99192938 99193604 PABL_A 660 + 1 660 61099 14 4 0 5 1 5 26 0 4 29 19 6 21 0 1 223 1 0 115 1 5 12 9 7 89 6 5 51 0 1 40 chain 8633 chr13 115169878 + 99225213 99225400 Tigger4a 237 + 0 237 167575 16 1 16 30 5 6 32 1 0 4 27 44 22 2 20 47 chain 7705 chr13 115169878 + 99231152 99231288 Tigger3c 601 - 0 139 172903 43 27 30 66 chain 4152 chr13 115169878 + 99254614 99254766 HSMAR2 1300 + 5 157 121330 59 2 0 17 1 0 56 1 4 16 chain 31917 chr13 115169878 + 99254782 99255157 L1PA5 6144 + 5751 6128 80985 188 0 1 106 0 1 81 chain 5354 chr13 115169878 + 99255213 99255409 HSMAR2 1300 + 157 364 121330 66 1 0 7 2 6 13 0 9 36 1 0 47 3 0 5 1 4 14 chain 3898 chr13 115169878 + 99307780 99307822 MER5A 189 - 146 188 208883 42 chain 25240 chr13 115169878 + 99311208 99311536 MER1B 344 - 0 344 103532 58 4 20 266 chain 27789 chr13 115169878 + 99315744 99316417 MER41C 542 - 113 542 93738 19 1 0 67 280 34 46 3 2 76 1 2 70 0 1 64 0 2 46 chain 2364 chr13 115169878 + 99351929 99352147 L1ME1 1623 - 357 574 234572 22 71 70 17 92 92 16 chain 14043 chr13 115169878 + 99358702 99359064 THE1B 368 + 0 367 144412 90 170 176 42 1 0 59 chain 5332 chr13 115169878 + 99360252 99360317 MER41B 635 + 481 547 191710 30 0 1 35 chain 4787 chr13 115169878 + 99370319 99370398 MADE1 96 + 1 96 197490 45 10 26 24 chain 243937 chr13 115169878 + 99386873 99389756 L1PA6 6164 + 3284 6162 16567 277 3 7 184 5 0 179 9 10 11 0 1 247 7 3 694 0 1 417 1 0 810 12 10 27 chain 34320 chr13 115169878 + 99405571 99405966 L1PA6 6164 + 4499 4894 77177 395 chain 74909 chr13 115169878 + 99405970 99406821 L1PA6 6164 + 4899 5748 46056 6 1 0 410 1 0 433 chain 33784 chr13 115169878 + 99406828 99407238 L1PA6 6164 + 5754 6160 77963 400 4 0 6 chain 7432 chr13 115169878 + 99408247 99408338 MER5A 189 + 15 106 174561 91 chain 88093 chr13 115169878 + 99416591 99417605 LTR5A 1029 + 0 1029 40339 14 0 2 118 0 13 882 chain 24999 chr13 115169878 + 99441039 99441421 MER51B 395 + 0 395 104799 40 13 28 32 17 23 122 1 0 10 7 4 6 4 0 130 chain 3010 chr13 115169878 + 99525746 99525782 MLT1J 494 + 94 130 224822 36 chain 3257 chr13 115169878 + 99530683 99530738 L1MA4 2864 - 181 240 219813 12 4 8 39 chain 10359 chr13 115169878 + 99541431 99541635 L1PB1 5432 + 5239 5422 158869 42 1 0 15 24 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 10159 chr13 115169878 + 99557903 99558032 MER41A 554 + 336 466 159810 94 0 1 35 chain 4723 chr13 115169878 + 99646696 99646752 MER20 218 + 157 213 198242 56 chain 14470 chr13 115169878 + 99648825 99649040 MER30 238 + 0 229 142985 24 0 1 55 6 0 19 0 1 4 4 0 6 3 28 52 3 0 39 chain 14153 chr13 115169878 + 99669893 99670116 MER30 238 - 0 238 144030 29 9 9 11 3 0 51 2 0 8 4 24 106 chain 14195 chr13 115169878 + 99674011 99674226 L1PA8 5853 + 5600 5847 143896 9 2 0 30 3 40 9 2 1 51 2 1 19 1 0 87 chain 26829 chr13 115169878 + 99724817 99725523 LTR35 598 + 51 446 96877 19 1 0 20 4 0 16 2 0 23 16 6 53 302 4 19 1 0 146 0 4 68 0 1 16 chain 26916 chr13 115169878 + 99754058 99754435 THE1C 375 - 0 375 96572 18 8 7 152 7 1 12 7 10 89 1 3 83 chain 3658 chr13 115169878 + 99767131 99767188 L1PB3 3668 + 3529 3582 212597 37 7 3 13 chain 79086 chr13 115169878 + 99767915 99768789 L1PA3long 6157 + 5278 6152 44012 231 0 1 360 1 0 282 chain 37162 chr13 115169878 + 99770698 99771159 LTR2 463 - 0 463 73291 88 14 15 76 0 1 283 chain 14744 chr13 115169878 + 99772040 99772332 THE1B 368 + 0 304 142123 33 0 15 60 13 15 54 69 64 63 chain 10720 chr13 115169878 + 99778417 99778571 L1PB2 3958 + 3653 3803 157321 28 1 0 64 6 4 25 1 0 29 chain 3116 chr13 115169878 + 99779709 99779745 L1MC1 2226 + 462 498 222612 36 chain 70173 chr13 115169878 + 99792666 99793693 MER11A 1151 + 0 1151 48320 79 11 19 95 1 0 6 1 0 90 14 11 169 18 19 148 0 4 32 29 34 37 0 4 67 0 1 19 7 65 46 0 1 45 8 7 77 0 48 28 chain 6461 chr13 115169878 + 99809652 99809735 L1MA8 2339 - 332 413 181548 53 2 0 28 chain 7036 chr13 115169878 + 99813827 99813912 7SLRNA 320 + 207 292 177210 85 chain 522339 chr13 115169878 + 99818861 99825707 L1PA6 6164 - 2 6164 4926 843 1 5 45 6 17 9 2 1 432 0 4 388 0 2 101 86 0 1125 5 7 329 303 0 204 0 1 314 19 1 120 0 2 158 323 0 76 1 0 206 0 1 1033 0 13 81 12 18 59 1 0 48 0 2 98 0 1 218 1 0 4 0 1 195 chain 27459 chr13 115169878 + 99829516 99829821 AluYk4 311 - 2 311 94784 33 0 4 272 chain 138332 chr13 115169878 + 99833747 99835727 MER4-int 2692 - 0 2005 26430 10 1 0 5 6 7 95 0 10 53 2 1 13 1 0 36 1 0 177 1 3 15 1 0 80 2 0 13 0 1 31 0 1 252 7 6 51 0 1 12 0 1 63 0 1 4 0 1 10 0 5 5 1 2 200 17 15 29 2 9 56 1 0 12 0 5 75 2 0 12 1 0 38 1 0 77 10 4 21 0 1 15 6 5 51 1 0 4 11 13 128 0 3 22 1 0 31 0 1 131 3 7 44 0 1 30 chain 16284 chr13 115169878 + 99847566 99847878 THE1C 375 + 0 335 137521 47 15 24 21 19 25 11 7 11 47 4 5 13 16 19 112 chain 22681 chr13 115169878 + 99857961 99858203 7SK 245 + 0 242 117156 242 chain 12561 chr13 115169878 + 99871780 99871953 MER30 238 + 47 238 150005 60 3 23 68 2 0 40 chain 4919 chr13 115169878 + 99875471 99875532 L1MB3 1562 - 8 68 196061 31 1 0 29 chain 4739 chr13 115169878 + 99886249 99886299 LTR17 781 - 457 507 198032 50 chain 110010 chr13 115169878 + 99893997 99895292 SVA_D 2077 - 5 1553 34215 544 1 38 8 0 98 173 49 0 127 0 51 47 1 0 1 0 38 30 2 1 79 0 40 32 0 40 201 chain 4124 chr13 115169878 + 99894723 99894772 SVA_D 2077 - 690 739 81826 49 chain 13088 chr13 115169878 + 99899797 99900006 L1PA8 5853 + 5648 5853 147891 30 19 18 43 4 3 18 1 0 77 2 1 15 chain 104035 chr13 115169878 + 99901483 99902994 L1PA16 3655 - 92 1569 35725 272 3 1 86 1 0 92 47 10 28 1 4 56 0 1 9 3 6 14 5 7 55 1 0 14 2 1 5 0 4 9 3 7 43 0 2 162 1 0 126 0 1 202 3 8 34 0 1 4 17 2 21 3 2 11 1 0 54 0 1 94 1 0 28 chain 3830 chr13 115169878 + 99968168 99968216 MADE1 96 - 1 51 209935 39 0 1 4 0 1 5 chain 7997 chr13 115169878 + 99988141 99988266 BC200 147 + 10 136 171084 78 18 19 29 chain 6746 chr13 115169878 + 99990155 99990276 MER30 238 - 0 114 179348 20 13 12 68 2 0 7 4 0 7 chain 79274 chr13 115169878 + 100001594 100002539 LTR13A 966 - 2 966 43925 50 1 3 216 1 0 25 2 0 363 0 11 150 0 3 14 0 1 51 0 4 25 0 1 47 chain 295139 chr13 115169878 + 100052175 100055573 L1PA6 6164 + 2755 6160 13692 1289 6 1 319 0 8 416 1 0 329 0 1 197 1 0 183 0 1 456 0 1 63 0 5 130 2 0 6 chain 2748 chr13 115169878 + 100080720 100080795 MER5B 177 + 84 162 229508 14 10 12 13 12 13 26 chain 3503 chr13 115169878 + 100098849 100098892 MER54A 897 + 839 885 215322 25 0 3 18 chain 24907 chr13 115169878 + 100104036 100104393 THE1A 353 + 0 353 105299 17 2 0 30 0 1 5 1 2 9 22 19 115 1 0 155 chain 17495 chr13 115169878 + 100113196 100113461 THE1D 372 + 105 372 134278 49 44 46 172 chain 23103 chr13 115169878 + 100114977 100115253 LTR12C 1709 - 1 275 115126 83 5 4 81 1 0 106 chain 37012 chr13 115169878 + 100131764 100132231 MER4-int 2692 + 73 546 73503 26 1 0 16 2 0 196 0 9 226 chain 49583 chr13 115169878 + 100139149 100139830 MER51A 677 - 16 677 59333 111 16 17 20 2 1 250 18 25 37 10 0 24 17 0 176 chain 68157 chr13 115169878 + 100143687 100144530 L1PA8 5853 + 5009 5853 49179 87 0 3 94 1 6 365 1 0 45 2 0 70 2 1 7 2 1 56 1 0 16 1 0 93 chain 88638 chr13 115169878 + 100146517 100147601 MER11B 1079 - 0 1079 40132 11 5 3 80 0 1 213 8 2 406 0 5 94 3 0 264 chain 39109 chr13 115169878 + 100148426 100149332 MER51A 677 - 16 675 70589 58 0 16 69 3 2 57 4 0 43 0 30 22 39 20 22 244 1 122 74 48 149 chain 919 chr13 115169878 + 100148682 100148721 MER51A 677 - 385 424 168241 39 chain 14798 chr13 115169878 + 100148745 100148987 MER51A 677 - 16 254 103148 122 5 6 20 2 1 53 4 0 36 chain 3057 chr13 115169878 + 100149109 100149159 MER51A 677 - 316 367 103148 5 0 1 45 chain 4127 chr13 115169878 + 100149454 100149508 MER53 195 + 115 169 205549 54 chain 20103 chr13 115169878 + 100162646 100163021 MSTA 426 - 12 397 126816 88 0 3 6 15 17 22 53 54 34 5 6 16 5 9 29 1 0 101 chain 10955 chr13 115169878 + 100182125 100182340 Tigger1a_Art 216 - 0 209 156380 11 11 12 59 2 0 4 1 0 38 4 5 36 12 10 28 3 0 6 chain 23801 chr13 115169878 + 100182407 100182693 AluY 311 + 10 298 111471 29 0 1 92 0 1 165 chain 6217 chr13 115169878 + 100186662 100186733 LTR17 781 + 255 326 183431 71 chain 6265 chr13 115169878 + 100188574 100188650 HY3 101 - 1 101 183041 23 0 24 53 chain 74097 chr13 115169878 + 100220768 100221638 MER11D 897 - 0 897 46462 93 2 0 194 1 24 79 1 0 166 0 7 334 chain 2733 chr13 115169878 + 100233843 100233874 MLT2B4 540 - 5 36 229713 31 chain 23043 chr13 115169878 + 100243946 100244226 AluY 311 + 22 299 115431 20 0 1 80 7 3 173 chain 3680 chr13 115169878 + 100257729 100257778 MER96B 391 - 119 167 212245 6 1 0 42 chain 26608 chr13 115169878 + 100297770 100298139 L1MA3 4352 - 798 1165 97627 10 0 1 7 0 3 130 8 7 9 4 0 122 1 0 78 chain 23008 chr13 115169878 + 100351362 100351640 AluSp 311 + 5 282 115588 273 1 0 4 chain 25051 chr13 115169878 + 100362177 100362465 AluYc3 301 - 12 301 104540 174 1 2 113 chain 12313 chr13 115169878 + 100373749 100373887 L1PA5 6144 - 16 154 150966 138 chain 10270 chr13 115169878 + 100416106 100416260 L1MA4 2864 - 2357 2521 159280 84 3 14 15 5 4 47 chain 388780 chr13 115169878 + 100438462 100442866 L1PA5 6144 - 0 4425 10492 843 0 4 150 0 5 120 1 0 489 1 2 759 0 1 4 1 0 94 1 0 426 0 4 818 0 1 538 12 8 139 0 12 8 chain 22650 chr13 115169878 + 100489049 100489302 L1PA4 6152 + 5896 6152 117322 107 0 1 140 0 2 6 chain 13986 chr13 115169878 + 100573301 100573466 L1PA4 6152 - 0 165 144622 165 chain 22306 chr13 115169878 + 100586105 100586487 THE1D 372 - 0 365 118892 81 13 16 81 1 0 7 20 19 79 0 1 7 2 12 19 29 0 43 chain 24755 chr13 115169878 + 100656954 100657242 AluSp 311 - 15 303 106142 288 chain 25896 chr13 115169878 + 100660499 100660815 AluSp 311 + 0 311 100457 22 8 0 69 0 3 217 chain 19235 chr13 115169878 + 100661660 100661939 MER1A 529 - 7 287 129422 25 11 11 19 11 13 159 1 0 53 chain 29572 chr13 115169878 + 100664303 100664620 AluYb8 318 + 0 317 86321 317 chain 32346 chr13 115169878 + 100668959 100669407 LTR43 600 - 0 437 80278 52 6 0 78 12 4 95 1 2 122 0 3 28 1 0 53 chain 4497 chr13 115169878 + 100677164 100677308 Tigger2 2703 + 1244 1381 132972 43 14 0 10 4 11 73 chain 29034 chr13 115169878 + 100677316 100677620 AluYa5 310 - 6 310 88836 304 chain 3685 chr13 115169878 + 100677621 100677739 Tigger2 2703 + 1381 1499 132972 118 chain 25462 chr13 115169878 + 100681235 100681536 AluSp 311 - 10 311 102398 301 chain 4668 chr13 115169878 + 100702371 100702449 MER61C 433 + 0 78 198887 15 1 0 30 5 6 27 chain 112541 chr13 115169878 + 100712679 100714550 L1PB1 5432 - 10 1538 33521 18 1 0 13 1 0 21 1 0 23 18 15 5 2 0 19 38 27 45 1 0 15 2 1 53 16 10 10 1 0 9 1 0 24 1 0 11 328 0 87 0 2 39 0 13 257 0 2 77 3 0 28 0 1 616 0 1 13 6 5 68 chain 8529 chr13 115169878 + 100720203 100720298 Tigger3c 601 - 48 143 168141 95 chain 1378 chr13 115169878 + 100729255 100729580 LTR10C 591 - 0 328 76666 81 0 2 177 0 1 67 chain 121212 chr13 115169878 + 100729583 100731015 LTR12C 1709 + 0 1709 30634 67 3 0 583 0 278 184 1 0 4 4 2 78 0 2 26 0 4 393 5 4 84 chain 401781 chr13 115169878 + 100731125 100735924 HERV9-int 5642 + 11 4824 10033 6 0 1 354 0 9 13 0 1 262 0 1 136 1 0 24 1 2 47 1 0 4 0 1 41 4 0 194 4 0 1075 0 2 52 1 2 1991 1 2 119 8 69 7 56 0 389 0 1 8 chain 10027 chr13 115169878 + 100737068 100737179 LTR12C 1709 + 0 111 160440 111 chain 1064 chr13 115169878 + 100737179 100737430 LTR10C 591 - 328 583 76666 124 6 10 121 chain 25729 chr13 115169878 + 100746212 100746504 AluSp 311 + 12 304 101165 292 chain 14890 chr13 115169878 + 100766358 100766548 L1MA3 4352 + 3224 3417 141660 47 0 4 112 1 0 30 chain 25055 chr13 115169878 + 100769727 100770024 L1PA6 6164 + 5855 6152 104525 297 chain 40911 chr13 115169878 + 100785905 100786441 MLT2A2 560 + 0 560 68021 56 0 8 247 0 4 91 16 28 126 chain 25364 chr13 115169878 + 100837891 100838199 AluSp 311 - 2 310 102860 308 chain 62352 chr13 115169878 + 100840027 100841924 L1PB1 5432 - 10 1032 51737 18 1 0 12 1 0 22 1 0 17 9 7 14 1 0 5 3 1 29 13 1 16 1 0 40 9 8 11 2 1 48 330 16 9 2 1 12 1 0 10 4 1 9 18 20 331 6 2 38 12 20 57 542 0 19 3 0 106 12 17 42 0 1 61 chain 43210 chr13 115169878 + 100841142 100841673 L1PA7 6471 - 2 530 65161 10 2 0 320 0 1 33 2 0 164 chain 3894 chr13 115169878 + 100866979 100867032 L1MA3 4352 - 1800 1848 208942 40 5 0 8 chain 5859 chr13 115169878 + 100868197 100868267 MER2 342 - 126 195 186594 37 1 0 32 chain 116838 chr13 115169878 + 100875479 100876854 LTR12C 1709 - 0 1709 32186 481 0 4 106 8 324 697 7 6 25 0 15 51 chain 51783 chr13 115169878 + 100881555 100882144 LTR10C 591 + 0 591 57765 510 0 2 79 chain 30960 chr13 115169878 + 100934518 100934875 LTR12C 1709 + 0 377 82587 95 0 1 188 0 19 74 chain 288260 chr13 115169878 + 100934884 100938203 HERV9-int 5642 + 1258 4585 14146 278 3 2 693 6 7 1213 0 1 207 1 0 231 3 11 684 chain 31342 chr13 115169878 + 100938462 100938864 LTR10F 562 - 46 562 81909 239 5 11 12 0 108 146 chain 5787 chr13 115169878 + 100943300 100943378 MER2 342 + 134 216 187299 45 1 5 32 chain 215824 chr13 115169878 + 100970605 100973016 L1PA5 6144 - 6 2438 18121 23 0 12 417 1 0 52 2 0 1003 1 8 140 0 3 199 0 2 573 chain 87386 chr13 115169878 + 100981315 100982583 HSMAR1 1287 + 0 1287 40613 121 0 2 46 0 5 381 0 1 7 5 4 14 21 24 16 1 5 266 1 0 5 3 4 14 51 52 54 8 11 138 15 16 101 chain 167139 chr13 115169878 + 101027094 101029523 L1P3 4156 - 663 4156 22381 603 0 4 20 1 0 146 337 1366 109 7 1 528 13 41 66 0 17 269 5 4 18 2 1 38 18 13 249 chain 28250 chr13 115169878 + 101027864 101028201 L1P3 4156 + 2269 2608 91505 248 14 16 75 chain 269318 chr13 115169878 + 101056186 101060844 MER61-int 3695 - 0 3695 15216 287 0 3 51 4 3 199 4 0 166 2 1 82 0 1 10 36 31 23 11 23 47 2 0 57 3 1 42 0 1 58 7 5 176 4 5 258 0 4 26 3 0 166 0 1 99 309 0 123 3 19 186 2 0 32 318 0 109 0 2 179 0 1 232 2 1 35 0 1 110 9 10 286 11 15 8 0 1 102 20 6 25 2 4 10 303 0 7 9 1 46 9 15 31 2 1 80 39 0 145 1 0 16 4 0 30 chain 10877 chr13 115169878 + 101076326 101076551 MER2 342 + 86 294 156673 12 27 25 66 16 0 17 14 16 50 1 0 22 chain 36336 chr13 115169878 + 101088326 101088880 MER51A 677 - 106 677 74458 139 12 23 66 0 42 107 61 26 30 1 0 138 chain 8949 chr13 115169878 + 101098147 101098264 L1MA8 2339 - 514 631 165876 7 1 0 9 0 1 100 chain 77163 chr13 115169878 + 101108639 101109555 LTR13A 966 - 18 955 44877 156 1 11 73 9 8 30 2 0 125 1 0 237 0 11 151 0 3 14 0 1 117 chain 22565 chr13 115169878 + 101140359 101140634 AluSp 311 - 24 298 117739 261 1 0 13 chain 5614 chr13 115169878 + 101190724 101190835 L1MB2 1706 - 13 125 188934 42 16 19 21 1 0 14 2 1 15 chain 3586 chr13 115169878 + 101210851 101210893 L1ME1 1623 + 1267 1309 213880 42 chain 119492 chr13 115169878 + 101220888 101222479 THE1C-int 1605 - 8 1605 31221 66 0 2 33 1 2 388 43 49 306 21 12 287 0 7 430 2 1 14 chain 9761 chr13 115169878 + 101222920 101223056 THE1C 375 + 239 375 161792 53 1 2 56 1 0 25 chain 4867 chr13 115169878 + 101226844 101226904 L1PA16 3655 + 3496 3558 196622 11 0 2 49 chain 3528 chr13 115169878 + 101266837 101266906 MIR 256 - 63 131 214902 28 15 14 26 chain 66670 chr13 115169878 + 101270745 101271496 SVA_D 2077 - 1 800 49802 531 5 4 124 1 50 90 chain 17049 chr13 115169878 + 101274635 101274934 THE1B 368 + 0 306 135461 108 8 9 60 39 37 14 17 25 53 chain 6276 chr13 115169878 + 101275034 101275105 L1PA3long 6157 - 1 72 182967 71 chain 108634 chr13 115169878 + 101329260 101330534 L1PA6 6164 - 17 1294 34529 160 6 0 665 0 4 20 0 5 423 chain 51556 chr13 115169878 + 101336265 101337754 L1PB1 5432 + 4605 5422 57920 23 3 0 131 5 7 38 0 9 164 1 2 119 7 7 9 3 0 24 8 6 13 330 2 9 2 0 52 2 1 15 1 0 45 357 27 15 19 9 14 2 0 45 1 0 13 1 0 18 chain 28435 chr13 115169878 + 101349202 101349694 MER66C 541 - 0 523 91448 9 1 0 28 0 22 175 45 0 9 23 42 20 6 39 97 12 15 67 chain 556859 chr13 115169878 + 101350336 101356371 L1PA2 6032 + 0 6024 623 370 15 4 5650 chain 41592 chr13 115169878 + 101370573 101371095 MER41A 554 - 0 526 67164 13 1 2 99 7 10 317 0 1 4 2 1 79 chain 22243 chr13 115169878 + 101384067 101384405 THE1B 368 + 4 368 119156 168 2 1 25 31 45 93 1 14 18 chain 38761 chr13 115169878 + 101391074 101391545 L1PA6 6164 + 5599 6160 71065 4 0 1 229 0 82 95 0 7 143 chain 79653 chr13 115169878 + 101413772 101414626 SVA_D 2077 - 7 960 43755 590 0 98 147 0 1 117 chain 45609 chr13 115169878 + 101418506 101419101 MER41B 635 - 0 608 62391 70 11 16 68 0 6 7 18 17 304 0 2 16 0 1 101 chain 7654 chr13 115169878 + 101429429 101429596 MER21A 919 - 721 894 173199 21 11 0 15 1 2 5 1 0 34 25 43 21 1 0 32 chain 210418 chr13 115169878 + 101430128 101432525 L1PA5 6144 - 6 2414 18475 148 0 1 481 0 1 8 0 1 197 0 4 639 0 1 295 14 18 402 1 0 212 chain 3372 chr13 115169878 + 101438009 101438168 L1MC4 1079 - 201 368 217637 7 5 0 7 0 7 14 89 95 37 chain 22206 chr13 115169878 + 101444239 101444566 THE1A 353 - 0 332 119321 156 0 3 69 34 35 42 0 1 26 chain 24776 chr13 115169878 + 101444575 101444926 THE1B 368 + 9 368 106021 94 1 0 66 1 0 29 35 45 125 chain 37134 chr13 115169878 + 101445188 101445599 L1PA3long 6157 - 0 410 73334 339 1 0 71 chain 54084 chr13 115169878 + 101445599 101446199 L1PA3long 6157 + 5170 5771 56304 156 0 1 444 chain 22453 chr13 115169878 + 101448257 101448589 THE1B 368 + 0 356 118231 44 5 20 104 1 0 30 10 11 4 0 1 14 7 15 113 chain 7167 chr13 115169878 + 101449746 101449923 MER31B 477 + 153 313 176290 27 40 32 44 30 21 36 chain 11799 chr13 115169878 + 101451802 101451969 MER61E 571 - 392 571 153051 81 1 14 61 6 5 18 chain 8688 chr13 115169878 + 101452818 101453007 LTR49 580 - 7 193 167258 18 0 1 31 5 6 5 1 0 40 49 45 40 chain 32996 chr13 115169878 + 101455963 101456410 MER41A 554 + 0 447 79221 195 0 4 33 21 16 32 0 2 33 1 0 132 chain 26336 chr13 115169878 + 101527240 101527534 L1PA4 6152 - 0 294 98667 294 chain 2599 chr13 115169878 + 101529106 101529172 MER102a 319 - 203 268 231709 22 1 0 10 4 0 7 8 12 14 chain 17855 chr13 115169878 + 101532270 101532475 AluSc5 308 + 73 278 133225 205 chain 30841 chr13 115169878 + 101534649 101535094 MLT2A1 477 + 0 477 82783 42 6 8 90 0 1 21 7 11 21 4 9 8 4 0 3 1 0 171 4 0 8 3 33 31 1 0 20 chain 25032 chr13 115169878 + 101538278 101538564 AluSg4 309 - 9 295 104630 286 chain 51363 chr13 115169878 + 101557321 101558137 MER4E1 777 + 0 769 58053 94 29 25 15 7 1 17 0 10 133 0 1 69 0 1 112 3 12 47 39 14 136 57 22 44 0 2 14 chain 3018 chr13 115169878 + 101558029 101558066 MER4E1 777 + 713 750 224669 37 chain 3154 chr13 115169878 + 101579343 101579381 MLT2B1 522 + 484 522 221869 38 chain 6741 chr13 115169878 + 101583654 101583736 MER47A 366 - 210 292 179388 82 chain 3975 chr13 115169878 + 101584606 101584692 MLT1C 463 - 372 463 207760 32 27 32 27 chain 32045 chr13 115169878 + 101616075 101616460 L1PA7 6471 - 5 385 80788 6 4 0 183 2 1 190 chain 538014 chr13 115169878 + 101616472 101622591 L1PA5 6144 - 12 6141 3148 458 0 2 780 0 9 255 1 0 352 0 1 1116 0 1 477 0 1 130 0 1 589 0 1 213 11 0 313 0 1 279 1 4 113 0 2 274 5 6 201 1 0 550 chain 12174 chr13 115169878 + 101622594 101622743 L1PA7 6471 - 372 521 151518 149 chain 120080 chr13 115169878 + 101627865 101629387 LTR12C 1709 + 0 1702 31032 300 0 1 349 0 278 184 1 0 5 7 5 82 1 0 20 0 4 132 2 1 14 0 2 94 101 1 230 chain 5866 chr13 115169878 + 101629085 101629157 LTR12C 1709 + 1399 1471 186533 72 chain 30225 chr13 115169878 + 101639727 101640064 L1PA4 6152 - 0 342 84116 6 0 5 331 chain 25077 chr13 115169878 + 101644686 101644972 AluY 311 + 3 289 104422 286 chain 8758 chr13 115169878 + 101648240 101648477 L1PA11 4918 - 289 493 166875 18 19 13 5 1 0 10 12 5 11 2 0 13 1 0 15 31 22 9 4 0 20 1 0 15 2 0 48 chain 4972 chr13 115169878 + 101658588 101658684 MER1B 344 - 5 142 195446 54 23 64 19 chain 33213 chr13 115169878 + 101659042 101659481 MLT2A1 477 - 3 477 78858 52 5 37 106 3 2 104 0 4 169 chain 457736 chr13 115169878 + 101693314 101699116 L1PA8 5853 - 4 5803 8481 65 0 1 23 22 20 52 1 0 9 2 1 68 2 0 48 1 0 213 3 1 51 0 1 49 3 7 141 0 3 87 0 2 847 0 3 243 5 7 37 0 4 331 1 0 198 0 4 336 1 0 153 13 91 34 1 0 639 2 1 53 34 0 119 0 2 50 0 1 7 0 1 232 0 1 354 49 0 54 0 5 786 14 14 91 0 4 30 0 1 162 45 24 6 1 0 9 3 1 22 chain 30006 chr13 115169878 + 101722720 101723146 Tigger1 2417 - 832 1255 84789 99 1 0 65 1 4 58 6 5 19 4 0 36 1 0 38 8 9 90 chain 23117 chr13 115169878 + 101763908 101764252 THE1B 368 + 0 368 115053 44 0 15 109 1 0 30 44 54 116 chain 4578 chr13 115169878 + 101764450 101764505 L1MB2 1706 + 1637 1692 199891 55 chain 30648 chr13 115169878 + 101782073 101782457 L1PA7 6471 - 1 386 83123 12 1 0 148 11 13 212 chain 65264 chr13 115169878 + 101788667 101789413 L1PA5 6144 - 10 758 50436 528 0 1 28 6 7 184 chain 7780 chr13 115169878 + 101821713 101821814 L1PA8 5853 - 0 100 172416 90 1 0 10 chain 100346 chr13 115169878 + 101850471 101851641 L1PA4 6152 + 4969 6143 36677 319 0 1 527 1 2 78 2 3 139 0 1 104 chain 43222 chr13 115169878 + 101851667 101852147 L1PA5 6144 + 5651 6132 65144 435 0 1 45 chain 48773 chr13 115169878 + 101859917 101860815 LTR12_ 688 + 7 688 59894 63 0 41 27 24 8 283 252 0 234 1 11 14 chain 3924 chr13 115169878 + 101860463 101860545 LTR12_ 688 + 452 534 174987 82 chain 141433 chr13 115169878 + 101865183 101866794 L1PA5 6144 + 4518 6132 25912 753 1 5 220 7 8 274 2 0 354 chain 75460 chr13 115169878 + 101888447 101889275 L1PA3long 6157 + 5330 6157 45788 519 1 0 308 chain 34319 chr13 115169878 + 101898015 101898511 MER51A 677 + 0 661 77181 176 46 23 31 0 193 36 4 0 53 2 1 148 chain 100963 chr13 115169878 + 101913042 101914562 L1MA1 4479 - 289 1782 36520 18 7 0 10 1 0 11 1 0 8 1 0 36 2 0 29 1 0 104 1 0 13 18 14 86 1 0 11 6 5 12 0 1 6 1 0 24 1 10 37 1 0 16 2 0 25 1 0 156 0 9 18 0 1 141 3 1 125 5 0 12 9 8 62 10 6 17 2 0 93 0 1 79 13 11 16 2 0 90 2 0 64 1 0 33 2 0 74 chain 27078 chr13 115169878 + 101931885 101932170 AluYa5 310 + 0 284 96008 132 1 0 152 chain 40801 chr13 115169878 + 101946933 101947454 MER11D 897 - 96 642 68173 41 9 6 6 0 3 125 4 27 43 0 2 41 0 1 224 1 0 27 chain 13112 chr13 115169878 + 101956631 101956810 L1PA8 5853 - 6 181 147800 87 1 0 19 2 1 52 1 0 9 1 0 7 chain 172188 chr13 115169878 + 101963261 101965143 L1PA4 6152 - 1551 3434 21793 551 0 1 1331 chain 135643 chr13 115169878 + 101965143 101966675 L1PA4 6152 + 4600 6152 26834 628 0 10 218 0 12 678 2 0 6 chain 35862 chr13 115169878 + 101976927 101977349 L1P1 4361 - 20 439 75048 12 2 1 23 1 0 157 1 0 226 chain 22588 chr13 115169878 + 101992347 101992621 AluY 311 + 11 285 117640 274 chain 16804 chr13 115169878 + 102007212 102007601 MSTB 430 + 0 391 136104 23 5 4 10 20 22 62 31 32 24 66 67 72 5 4 71 chain 303228 chr13 115169878 + 102007601 102011544 L1PA8 5853 + 1895 5853 13273 131 3 1 652 1 5 222 2 3 30 6 2 105 0 2 85 7 21 151 6 5 79 4 0 211 0 2 301 1 3 88 0 1 345 1 0 328 0 4 186 9 0 61 6 1 89 2 0 61 12 14 355 0 1 124 1 0 18 1 0 25 3 1 40 18 35 6 1 0 52 1 0 19 1 0 93 chain 44590 chr13 115169878 + 102020356 102020841 L1PA3long 6157 - 0 485 63493 485 chain 60182 chr13 115169878 + 102031460 102032186 L1PA7 6471 + 5702 6432 52737 76 1 2 322 1 0 6 1 3 83 1 0 103 0 2 74 0 1 58 chain 30154 chr13 115169878 + 102039290 102039605 AluYb8 318 + 0 315 84320 315 chain 17639 chr13 115169878 + 102043216 102043415 L1PA5 6144 + 5939 6138 133881 199 chain 17659 chr13 115169878 + 102045924 102046141 AluSp 311 + 39 265 133806 43 0 9 174 chain 16801 chr13 115169878 + 102053189 102053444 THE1D 372 + 94 365 136114 99 0 2 29 7 22 37 7 9 37 5 2 34 chain 26366 chr13 115169878 + 102072277 102072561 AluYc3 301 - 17 301 98553 284 chain 6224 chr13 115169878 + 102081012 102081084 L1PA16 3655 - 77 149 183377 72 chain 173497 chr13 115169878 + 102092243 102094429 L1PB1 5432 + 2901 5102 21653 462 0 4 364 2 0 7 7 0 159 0 1 242 0 9 61 3 4 282 12 16 37 1 0 77 3 0 17 19 20 131 0 8 300 chain 10005 chr13 115169878 + 102110995 102111120 MER2 342 - 80 205 160558 125 chain 11811 chr13 115169878 + 102137709 102137873 L1PB2 3958 + 3383 3541 152980 56 2 0 12 4 0 90 chain 45898 chr13 115169878 + 102143978 102144537 L1PA7 6471 - 3 553 62132 9 2 0 129 0 1 6 1 0 19 1 0 78 6 0 308 chain 4099 chr13 115169878 + 102144537 102144585 L1PA7 6471 + 5872 5920 205958 48 chain 23967 chr13 115169878 + 102161377 102161739 THE1B 368 - 2 366 110533 172 8 11 10 2 1 85 32 23 8 0 9 45 chain 63016 chr13 115169878 + 102162515 102163495 L1PA16 3655 - 61 1045 51436 17 7 4 267 39 49 53 1 0 74 19 20 110 0 3 75 1 0 23 1 0 135 3 0 57 46 45 52 chain 19294 chr13 115169878 + 102178509 102178739 L1PA7 6471 - 1 232 129258 12 1 2 217 chain 18163 chr13 115169878 + 102178739 102178946 L1PA7 6471 + 6015 6222 132426 207 chain 6398 chr13 115169878 + 102188404 102188479 L1PA2 6032 - 3 76 182039 10 2 0 63 chain 537249 chr13 115169878 + 102191422 102197550 L1PA4 6152 - 18 6151 3282 321 0 1 1227 1 0 535 0 1 156 3 4 205 1 0 175 1 0 1196 1 0 899 0 5 673 1 0 451 3 5 279 chain 13508 chr13 115169878 + 102232802 102233003 L1PA5 6144 - 9 210 146331 28 0 1 98 1 8 9 17 10 39 1 0 8 chain 282487 chr13 115169878 + 102251098 102254239 L1PA4 6152 - 312 3456 14505 2343 0 4 90 1 0 707 chain 20741 chr13 115169878 + 102290802 102291163 THE1B 368 - 0 368 124812 125 61 68 6 1 0 34 26 27 108 chain 177543 chr13 115169878 + 102293922 102295869 L1PA3long 6157 - 8 1955 21204 1947 chain 56437 chr13 115169878 + 102303576 102304417 L1PA11 4918 - 340 1133 54886 11 2 0 13 1 0 14 30 21 11 4 0 19 5 4 12 2 0 29 29 6 30 6 5 8 1 0 67 5 0 515 0 1 27 chain 56453 chr13 115169878 + 102308182 102308947 MER4E1 777 - 0 777 54878 87 0 1 23 9 18 99 4 0 268 0 2 26 1 2 4 1 0 188 12 16 43 chain 10165 chr13 115169878 + 102309306 102309416 L1PA2 6032 - 1 111 159773 110 chain 7805 chr13 115169878 + 102346186 102346290 MER85 139 - 23 137 172280 17 1 11 86 chain 30305 chr13 115169878 + 102361433 102361751 AluYb8 318 + 0 318 83894 318 chain 33690 chr13 115169878 + 102376557 102376947 L1PA5 6144 + 5738 6139 78104 86 0 11 304 chain 32250 chr13 115169878 + 102392114 102392608 LTR2B 499 + 34 499 80440 35 11 0 42 3 22 49 51 14 303 chain 10720 chr13 115169878 + 102394397 102394541 L1PA8 5853 - 159 307 157320 15 2 1 70 2 0 39 0 7 16 chain 9503 chr13 115169878 + 102394542 102394671 L1PA8 5853 + 5716 5843 163053 24 2 1 19 2 1 82 chain 6522 chr13 115169878 + 102397715 102398045 L1MC1 2226 - 37 331 181067 5 1 0 23 13 12 13 28 18 12 87 69 45 46 41 21 14 13 22 chain 42445 chr13 115169878 + 102557563 102558053 L1PA7 6471 + 5971 6461 66083 490 chain 151609 chr13 115169878 + 102560892 102562603 L1PA4 6152 + 4441 6152 24385 1451 1 0 248 0 1 11 chain 14230 chr13 115169878 + 102587815 102588059 THE1D 372 + 78 338 143792 4 0 1 97 53 68 90 chain 5226 chr13 115169878 + 102590248 102590313 MLT1B 390 + 325 390 192767 65 chain 45721 chr13 115169878 + 102599387 102600041 L1PA16 3655 + 2941 3592 62294 44 1 0 20 0 4 55 0 3 48 1 0 4 0 1 84 1 0 86 2 0 43 6 5 27 6 4 200 11 8 15 chain 5973 chr13 115169878 + 102600755 102600821 L1PA5 6144 + 6074 6140 185483 66 chain 30502 chr13 115169878 + 102614346 102614766 L1PA10 4194 - 33 454 83425 11 1 0 28 22 19 20 7 8 126 0 4 205 chain 34609 chr13 115169878 + 102625778 102626223 MLT2A1 477 - 1 477 76745 36 9 3 11 3 41 181 0 1 21 0 1 10 3 0 171 chain 38730 chr13 115169878 + 102640773 102641216 L1PA4 6152 + 5708 6151 71108 294 1 0 36 0 1 112 chain 9926 chr13 115169878 + 102646172 102646280 L1PA4 6152 + 6043 6151 160943 108 chain 23785 chr13 115169878 + 102657011 102657363 THE1C 375 + 0 360 111561 32 10 17 76 3 0 55 1 2 21 1 0 6 1 5 146 chain 30114 chr13 115169878 + 102659077 102659393 AluYb8 318 - 2 318 84445 316 chain 6079 chr13 115169878 + 102669345 102669419 HY1 111 - 37 111 184579 74 chain 35001 chr13 115169878 + 102699801 102700181 L1PA4 6152 + 5763 6143 76189 380 chain 130834 chr13 115169878 + 102720641 102722186 LTR12C 1709 + 0 1709 27901 265 1 2 251 1 0 49 15 16 66 0 1 36 0 1 49 0 160 215 1 0 6 2 0 107 0 4 481 chain 27676 chr13 115169878 + 102735022 102735323 AluYa5 310 + 0 297 94130 126 4 0 171 chain 16519 chr13 115169878 + 102781996 102782191 L1PA5 6144 + 5943 6144 136859 174 0 6 21 chain 401275 chr13 115169878 + 102806461 102811022 L1PA4 6152 + 1579 6143 10047 5 0 2 669 0 2 55 0 2 562 0 1 287 1 2 84 0 3 429 1 0 667 5 9 819 23 10 142 0 1 302 0 1 371 1 0 12 0 1 126 chain 66184 chr13 115169878 + 102817420 102818155 L1PA4 6152 + 5396 6136 50014 598 0 1 101 0 4 36 chain 5770 chr13 115169878 + 102822194 102822323 MER3 215 + 66 196 187438 44 44 45 41 chain 7358 chr13 115169878 + 102843647 102843893 MLT1A 405 - 10 304 175040 34 8 9 15 1 0 21 97 144 43 10 11 17 chain 24895 chr13 115169878 + 102853178 102853481 AluY 311 + 8 311 105376 118 0 1 96 1 2 57 2 0 29 chain 8747 chr13 115169878 + 102898988 102899101 L1PREC2 3366 + 2627 2740 166938 113 chain 85070 chr13 115169878 + 102905014 102906049 L1PA7 6471 - 1 1033 41488 26 9 1 4 0 1 821 0 3 76 0 1 99 chain 12402 chr13 115169878 + 102939350 102939488 L1PA5 6144 + 6006 6144 150627 138 chain 54361 chr13 115169878 + 103006323 103007103 MER4A 717 + 2 717 56126 121 1 0 274 1 0 94 5 0 84 0 2 6 2 0 38 63 4 50 0 1 41 chain 5394 chr13 115169878 + 103006949 103007012 MER4A 717 - 534 597 188554 63 chain 3548 chr13 115169878 + 103030436 103030547 L1MC1 2226 + 2083 2185 214571 14 10 8 18 1 0 5 5 1 7 1 0 8 17 16 25 chain 25282 chr13 115169878 + 103060559 103060935 L1PA17 2846 - 153 521 103307 44 1 0 17 1 0 32 1 0 8 2 0 11 5 8 39 1 0 14 7 0 33 0 1 30 1 3 108 1 0 20 chain 6763 chr13 115169878 + 103077205 103077296 MADE1 96 + 0 93 179221 46 0 1 29 1 2 15 chain 97461 chr13 115169878 + 103120787 103122045 L1PA8 5853 - 0 1267 37439 93 1 0 19 2 1 52 1 0 5 2 1 74 2 0 44 1 0 49 1 0 108 4 13 173 1 0 62 0 1 19 1 0 52 0 2 76 2 0 53 0 1 229 0 1 50 0 7 82 chain 5308 chr13 115169878 + 103124345 103124447 MER52C 1267 - 213 326 191935 56 30 41 16 chain 40236 chr13 115169878 + 103138704 103139248 MLT2A2 560 + 0 560 68970 187 10 0 10 6 18 87 1 3 101 0 11 67 5 6 70 chain 19087 chr13 115169878 + 103141967 103142326 THE1D 372 + 0 372 129856 72 0 1 87 85 100 33 6 4 10 1 0 4 0 1 28 1 0 32 chain 8495 chr13 115169878 + 103143758 103144009 L1PB1 5432 + 5194 5430 168318 26 2 1 16 4 3 14 0 1 22 88 79 14 1 0 21 1 0 13 1 0 16 2 0 10 chain 22299 chr13 115169878 + 103159830 103160195 THE1B 368 + 0 368 118916 169 1 0 4 22 21 6 0 5 4 1 0 4 0 1 16 1 0 10 1 0 87 6 8 15 1 2 4 1 0 12 chain 560833 chr13 115169878 + 103174370 103180526 L1PA3long 6157 + 4 6157 319 313 1 0 366 4 0 3703 0 1 920 0 1 849 chain 93225 chr13 115169878 + 103185433 103186508 MER11C 1089 + 3 1079 38590 564 1 0 426 0 2 84 chain 373142 chr13 115169878 + 103194397 103199554 L1PB1 5432 + 304 5420 10985 14 5 9 84 2 0 171 3 4 15 2 1 444 12 6 66 0 2 269 0 1 5 1 0 7 2 0 4 16 0 225 0 1 33 14 15 34 0 4 21 0 1 150 0 15 21 3 1 244 0 3 251 16 16 51 2 0 31 0 1 8 9 13 346 0 3 204 0 1 71 0 9 552 7 0 124 37 64 143 1 2 366 0 1 178 11 12 481 6 7 5 3 0 20 1 0 9 73 25 52 2 1 16 1 0 43 1 0 16 3 0 7 15 6 18 3 1 4 1 0 12 20 9 17 8 7 14 1 0 13 1 0 16 chain 15651 chr13 115169878 + 103212291 103212480 L1PA6 6164 + 5966 6162 139426 71 0 3 110 0 4 8 chain 4794 chr13 115169878 + 103235097 103235151 THE1D 372 - 318 372 197428 54 chain 244197 chr13 115169878 + 103320695 103323872 HERVK22-int 3844 - 0 3843 16544 21 1 0 72 2 1 45 0 1 34 0 653 233 4 5 96 0 3 270 0 1 131 1 0 428 0 4 323 16 16 31 1 0 110 21 6 377 7 0 123 0 1 15 6 9 87 0 5 252 0 15 46 0 4 88 0 1 336 chain 4314 chr13 115169878 + 103332268 103332316 MER58A 224 + 39 87 203050 48 chain 28630 chr13 115169878 + 103348540 103348869 L1PA7 6471 + 6136 6464 90608 186 1 0 142 chain 17752 chr13 115169878 + 103356653 103356940 MER31A 484 - 137 422 133561 79 1 2 54 10 11 36 28 0 18 0 24 61 chain 28742 chr13 115169878 + 103358662 103359087 L1PA8 5853 - 0 422 90161 92 2 1 15 2 1 25 0 3 9 3 8 20 1 0 71 2 0 44 1 0 18 1 0 23 8 4 88 chain 24526 chr13 115169878 + 103377639 103377941 AluSc 308 + 5 307 107400 302 chain 5068 chr13 115169878 + 103405268 103405324 MLT1B 390 + 131 187 194446 56 chain 35488 chr13 115169878 + 103405363 103405842 L1PA8 5853 + 5386 5853 75571 178 1 0 44 2 0 70 16 13 31 4 0 18 2 1 19 1 0 93 chain 29607 chr13 115169878 + 103407715 103408109 L1PA8A 6298 + 5895 6290 86193 106 0 1 160 30 30 98 chain 10770 chr13 115169878 + 103421045 103421257 MER30 238 - 0 238 157108 45 9 12 25 19 39 9 4 0 72 12 19 17 chain 49140 chr13 115169878 + 103432511 103433122 PABL_A 660 + 0 660 59640 37 0 1 46 6 15 78 0 39 444 chain 6023 chr13 115169878 + 103472348 103472415 HY5 76 + 8 75 185032 67 chain 18648 chr13 115169878 + 103484101 103484326 AluY 311 + 4 214 131092 122 15 0 88 chain 18270 chr13 115169878 + 103489788 103490036 L1PB2 3958 + 3590 3838 132154 28 1 0 61 1 0 49 0 3 44 1 0 63 chain 19961 chr13 115169878 + 103492823 103493054 AluY 311 + 71 303 127270 55 0 1 176 chain 5966 chr13 115169878 + 103564801 103564940 L1MA8 2339 - 78 212 185536 5 1 0 23 3 1 13 26 23 36 2 3 30 chain 3011 chr13 115169878 + 103569227 103569259 L1PA8 5853 - 1 33 224794 32 chain 114161 chr13 115169878 + 103571086 103572708 L1PA15 4387 - 35 1642 33047 23 5 0 14 3 1 44 22 19 34 1 0 6 5 3 23 1 0 55 1 0 26 2 1 171 1 0 114 0 1 6 3 0 57 0 1 49 1 0 35 7 8 12 2 0 359 4 5 117 2 0 136 0 1 57 1 0 37 0 6 81 1 0 4 0 1 100 chain 25257 chr13 115169878 + 103602991 103603330 L1PA8 5853 - 0 332 103436 93 1 0 16 1 0 54 1 0 11 2 1 70 2 0 46 1 0 41 chain 3907 chr13 115169878 + 103609429 103609539 MER5A1 166 - 6 116 208754 20 7 8 30 33 32 20 chain 51201 chr13 115169878 + 103676780 103677370 L1PA7 6471 - 1 591 58186 590 chain 3208 chr13 115169878 + 103694637 103694673 L1ME1 1623 - 636 672 220762 36 chain 43941 chr13 115169878 + 103707984 103708625 LTR10E 629 + 0 629 64275 18 1 0 29 3 0 5 15 10 102 0 2 130 2 1 73 7 6 185 26 24 37 1 0 7 chain 61244 chr13 115169878 + 103721636 103722309 L1PA3long 6157 + 5486 6157 52233 155 2 0 516 chain 18944 chr13 115169878 + 103752491 103752875 THE1D 372 - 0 370 130246 123 63 65 105 40 23 27 1 0 5 7 9 13 chain 191815 chr13 115169878 + 103770149 103772284 L1PA4 6152 - 5 2150 19881 1718 0 1 73 0 4 81 0 2 46 0 3 217 chain 35475 chr13 115169878 + 103789747 103790136 L1PA3long 6157 - 0 389 75587 389 chain 2738 chr13 115169878 + 103811561 103811652 MER5B 177 - 78 158 229638 27 49 38 15 chain 15979 chr13 115169878 + 103814548 103814844 THE1B 368 - 57 368 138413 5 1 0 53 7 47 8 35 0 22 8 7 91 8 20 58 chain 39889 chr13 115169878 + 103829173 103829740 L1PA8 5853 - 0 557 69473 88 4 8 16 3 2 38 38 26 67 2 0 44 6 5 163 0 2 98 chain 14119 chr13 115169878 + 103878467 103878704 MER41G 495 - 253 495 144143 31 49 51 110 0 3 47 chain 5614 chr13 115169878 + 103904914 103904976 LTR8 732 - 639 701 188933 62 chain 5157 chr13 115169878 + 103910234 103910313 L1PB1 5432 - 10 86 193474 18 1 0 10 4 3 21 1 0 24 chain 28610 chr13 115169878 + 103919575 103919944 THE1B 368 + 0 368 90695 168 5 4 25 0 1 4 1 0 166 chain 21553 chr13 115169878 + 103932564 103932814 L1PA5 6144 + 5885 6135 121954 250 chain 3250 chr13 115169878 + 103941512 103941551 MLT1B 390 - 44 85 220004 10 0 2 29 chain 9847 chr13 115169878 + 103991212 103991335 L1MA4 2864 - 203 326 161355 123 chain 28690 chr13 115169878 + 103993061 103993415 THE1A 353 - 0 353 90366 243 1 0 110 chain 27458 chr13 115169878 + 104009882 104010173 AluYa5 310 - 21 310 94790 41 2 0 248 chain 154752 chr13 115169878 + 104026907 104028686 L1PA4 6152 + 4338 6143 24012 16 0 4 70 0 1 407 0 12 504 0 5 421 0 3 28 0 1 333 chain 63866 chr13 115169878 + 104052391 104053119 L1PA5 6144 - 6 734 51071 728 chain 9979 chr13 115169878 + 104053119 104053250 L1P1 4361 + 4212 4341 160680 93 1 0 23 2 1 12 chain 48500 chr13 115169878 + 104070393 104070976 L1PA5 6144 + 5547 6141 60110 177 1 0 157 6 20 95 0 1 134 3 0 10 chain 47221 chr13 115169878 + 104092767 104093305 L1PA5 6144 - 0 539 61029 338 0 1 200 chain 7894 chr13 115169878 + 104095022 104095143 L1PA8 5853 + 5709 5828 171688 31 2 1 19 7 6 62 chain 52188 chr13 115169878 + 104097355 104098064 L1PREC2 3366 + 2147 2854 57507 100 0 1 343 0 1 128 0 1 20 13 11 54 2 1 27 2 1 14 1 0 5 chain 13739 chr13 115169878 + 104101331 104101633 THE1B 368 + 0 306 145472 18 0 1 4 1 0 45 63 63 38 1 0 21 7 10 9 1 5 10 7 6 12 1 0 64 chain 55161 chr13 115169878 + 104111072 104111786 L1PB1 5432 - 338 1057 55608 78 0 2 48 3 4 144 0 1 188 0 1 253 chain 13779 chr13 115169878 + 104111786 104112077 L1PB1 5432 + 5127 5390 145158 11 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 2 1 15 1 0 34 45 25 6 0 7 19 2 0 4 1 0 16 2 0 17 0 1 5 1 0 20 chain 56623 chr13 115169878 + 104112081 104112705 L1PA2 6032 + 5396 6021 54759 64 0 1 560 chain 45579 chr13 115169878 + 104123111 104123663 MLT2A2 560 - 0 558 62433 6 0 4 92 3 4 249 0 1 202 chain 67535 chr13 115169878 + 104123670 104124658 HERVL-int 5654 - 5 950 49425 68 0 6 5 31 0 17 41 13 78 0 3 26 4 0 70 0 3 139 4 5 11 0 7 13 0 1 325 5 4 151 chain 25398 chr13 115169878 + 104144396 104144662 AluYa5 310 - 0 266 102695 266 chain 486479 chr13 115169878 + 104155407 104161003 L1PA4 6152 - 11 6151 7503 410 1 0 429 0 4 1265 2 544 324 1 0 35 1 0 751 0 1 58 1 0 865 6 10 251 1 2 176 1 0 456 0 1 182 5 1 375 chain 58194 chr13 115169878 + 104174588 104175310 L1PA8 5853 + 5136 5853 53869 383 1 0 45 1 0 45 2 0 70 1 0 9 1 2 54 1 0 16 1 0 53 0 1 39 chain 21148 chr13 115169878 + 104199958 104200193 L1PA3long 6157 + 5746 5981 123380 235 chain 84949 chr13 115169878 + 104212383 104213414 L1PA7 6471 + 5376 6461 41535 100 0 54 89 1 0 478 0 2 8 7 5 40 0 1 308 chain 30235 chr13 115169878 + 104239247 104239646 MLT2A1 477 - 78 477 84100 14 4 0 62 1 0 150 5 9 21 0 1 142 chain 19146 chr13 115169878 + 104243236 104243476 AluY 311 + 58 299 129689 74 10 11 156 chain 4990 chr13 115169878 + 104245951 104246104 MLT1D 503 + 329 484 195246 15 1 0 15 0 1 5 74 76 43 chain 13655 chr13 115169878 + 104248684 104248893 L1PA8 5853 + 5647 5853 145759 18 0 1 16 1 0 8 1 0 54 2 1 62 14 13 33 chain 119627 chr13 115169878 + 104252148 104253633 LTR12C 1709 + 0 1709 31169 338 0 43 17 4 3 85 1 2 162 0 119 68 1 0 238 0 47 15 1 11 76 0 4 131 3 2 101 11 14 233 chain 27788 chr13 115169878 + 104258988 104259310 L1PA5 6144 - 1 321 93741 8 5 0 44 0 3 265 chain 21300 chr13 115169878 + 104288805 104289200 MSTA 426 + 0 405 122862 96 20 12 22 21 22 42 40 48 55 12 20 67 0 1 20 chain 25112 chr13 115169878 + 104301576 104301853 L1PA3long 6157 - 0 279 104220 5 0 2 272 chain 16955 chr13 115169878 + 104301853 104302037 L1PA3long 6157 + 5711 5895 135716 184 chain 4276 chr13 115169878 + 104306484 104306533 L1MB1 2102 + 1957 2006 203519 49 chain 21513 chr13 115169878 + 104319836 104320073 L1PA4 6152 - 1 237 122089 148 1 0 88 chain 35747 chr13 115169878 + 104320470 104320974 LTR10F 562 - 0 562 75203 259 31 37 13 0 52 19 4 4 178 chain 47308 chr13 115169878 + 104354256 104354817 L1PA7 6471 - 1 566 60962 342 0 4 219 chain 39525 chr13 115169878 + 104359026 104359465 L1PA4 6152 + 5701 6141 69987 337 0 1 102 chain 22698 chr13 115169878 + 104363021 104363335 THE1D 372 + 45 372 117086 19 5 15 22 5 4 39 0 1 44 0 3 180 chain 150265 chr13 115169878 + 104399273 104400974 L1P1 4361 - 20 1716 24573 12 2 1 23 1 0 155 1 0 647 1 0 223 1 0 635 chain 24833 chr13 115169878 + 104419728 104420105 THE1C 375 - 0 375 105710 26 2 1 91 1 0 40 28 29 10 0 1 24 5 3 150 chain 26633 chr13 115169878 + 104435586 104435946 THE1B 368 - 12 368 97544 63 1 0 91 1 0 28 13 11 163 chain 6861 chr13 115169878 + 104475974 104476073 THE1C 375 + 1 102 178491 53 9 11 37 chain 473908 chr13 115169878 + 104476308 104482822 L1PA7 6471 - 6 6471 7920 60 5 0 89 7 1 5 1 0 53 0 1 447 305 0 84 0 1 527 0 1 4 1 0 97 0 1 77 23 26 785 0 1 85 13 1 42 2 3 293 0 11 68 1 0 5 0 1 35 0 1 50 1 0 4 5 6 36 0 9 26 0 1 335 9 2 103 7 5 192 0 202 51 2 14 77 0 7 40 0 2 237 1 0 86 0 1 10 1 0 146 1 2 125 0 14 113 3 1 126 0 1 272 1 2 51 5 0 23 17 36 401 0 1 68 0 1 23 11 16 171 3 0 98 4 3 58 1 0 7 1 0 146 0 7 8 5 6 81 17 16 141 chain 22687 chr13 115169878 + 104514436 104514717 AluSp 311 - 30 311 117136 281 chain 12635 chr13 115169878 + 104520843 104520980 L1PA5 6144 + 5995 6132 149707 137 chain 28472 chr13 115169878 + 104522140 104522438 AluYa5 310 - 0 298 91298 298 chain 20221 chr13 115169878 + 104532663 104532945 AluSp 311 - 17 311 126464 22 7 8 136 10 9 88 0 12 19 chain 30929 chr13 115169878 + 104580008 104580372 L1PA7 6471 - 7 370 82635 156 1 0 207 chain 30435 chr13 115169878 + 104595296 104595680 MLT2A1 477 + 0 381 83570 169 4 1 211 chain 30174 chr13 115169878 + 104603033 104603351 AluYb8 318 - 0 318 84263 318 chain 57502 chr13 115169878 + 104603448 104604115 L1PA4 6152 - 0 657 54237 13 0 3 148 7 0 483 6 0 10 chain 23663 chr13 115169878 + 104622476 104622771 AluY 311 + 10 290 112231 116 16 0 155 0 1 8 chain 11588 chr13 115169878 + 104647611 104647740 L1PA5 6144 - 16 145 153938 129 chain 25844 chr13 115169878 + 104688874 104689199 MLT2A1 477 - 151 475 100678 122 0 1 23 0 1 9 6 3 165 chain 69749 chr13 115169878 + 104689201 104690088 HERVL-int 5654 - 0 885 48494 246 0 1 27 8 3 94 5 7 55 1 0 90 0 1 361 chain 55445 chr13 115169878 + 104703582 104704176 L1HS 6032 + 5438 6032 55442 594 chain 48291 chr13 115169878 + 104733429 104733969 L1PA3long 6157 - 1275 1816 60248 210 1 2 329 chain 113539 chr13 115169878 + 104733980 104735246 L1PA3long 6157 + 4888 6157 33215 981 0 1 150 3 5 132 chain 15295 chr13 115169878 + 104737583 104737791 L1PB2 3958 - 120 324 140503 63 1 0 22 2 0 74 1 0 45 chain 8297 chr13 115169878 + 104738367 104738476 L1PB2 3958 + 3266 3372 169418 41 2 0 56 1 0 9 chain 7419 chr13 115169878 + 104766795 104766883 L1PA7 6471 + 6378 6466 174658 88 chain 58066 chr13 115169878 + 104769821 104770493 L1PA5 6144 + 5464 6124 53943 498 14 0 32 0 1 82 0 1 46 chain 60553 chr13 115169878 + 104772673 104773500 LTR12 884 - 15 884 52539 48 25 20 213 5 18 114 4 1 36 8 41 206 0 4 168 chain 4652 chr13 115169878 + 104803890 104803945 MLT2A1 477 + 422 477 199049 55 chain 226772 chr13 115169878 + 104835413 104838220 L1PA6 6164 - 15 2830 17495 5 0 1 15 12 9 811 1 0 665 1 0 128 1 5 67 0 1 261 0 5 112 0 1 157 0 2 474 2 0 6 22 24 33 6 5 28 chain 119395 chr13 115169878 + 104845057 104846628 THE1A-int 1579 + 0 1574 31268 633 51 54 298 11 10 571 0 1 7 chain 275019 chr13 115169878 + 104862148 104865769 HERVH-int 3825 - 0 3825 14922 487 8 218 702 5 4 5 0 1 15 12 59 213 4 1 21 8 13 82 0 4 220 0 1 88 0 5 257 9 0 41 5 6 231 0 2 12 0 4 297 0 3 38 3 8 7 2 0 78 1 0 46 29 25 13 22 0 14 50 0 24 12 10 20 0 1 14 1 0 32 0 4 14 10 12 139 2 1 69 0 5 259 chain 911 chr13 115169878 + 104865136 104865171 HERVH-int 3825 - 3134 3169 208768 35 chain 26159 chr13 115169878 + 104865776 104866174 LTR7 482 - 5 482 99367 44 12 14 38 0 4 85 5 8 20 8 40 109 8 46 69 chain 28911 chr13 115169878 + 104872408 104872757 L1PA5 6144 + 5780 6130 89408 192 15 16 142 chain 5125 chr13 115169878 + 104882509 104882574 MER101 471 - 393 459 193832 4 0 1 61 chain 13181 chr13 115169878 + 104921496 104921764 MSTB 430 + 131 417 147542 7 14 0 20 2 0 6 32 43 7 6 0 8 0 12 70 0 17 77 0 1 4 1 0 14 chain 26089 chr13 115169878 + 104958341 104958665 AluY 311 + 0 306 99667 126 15 0 126 3 0 54 chain 29678 chr13 115169878 + 104967413 104967792 THE1C 375 - 0 375 85908 25 1 0 225 3 0 125 chain 264345 chr13 115169878 + 104982240 104985475 L1PA7 6471 - 4 3251 15464 6 4 0 142 5 6 174 0 1 39 1 2 476 1 0 376 0 1 85 4 9 39 0 2 160 5 3 5 0 3 113 3 2 478 1 2 681 0 1 31 20 25 108 1 0 277 chain 39845 chr13 115169878 + 104989964 104990514 LTR12_ 688 + 0 688 69542 125 7 9 10 0 24 98 16 26 118 1 103 175 chain 553343 chr13 115169878 + 104992712 104998851 L1PA3long 6157 - 10 6152 1029 130 0 1 945 1 0 1812 0 3 89 3 1 580 0 1 210 0 1 2369 chain 4544 chr13 115169878 + 105034328 105034377 LTR12C 1709 + 1658 1707 200303 49 chain 27134 chr13 115169878 + 105040662 105041054 MER9a3 513 + 0 513 95819 17 6 31 50 1 0 11 0 3 5 9 75 67 0 17 17 2 12 129 0 1 78 chain 43779 chr13 115169878 + 105044255 105044794 MER41A 554 - 0 554 64480 298 8 23 233 chain 21973 chr13 115169878 + 105075776 105076074 AluSp 311 + 10 303 120340 37 13 11 67 1 0 167 2 0 11 chain 8061 chr13 115169878 + 105079859 105079959 L1MB7 1623 - 456 556 170690 100 chain 13184 chr13 115169878 + 105091511 105091659 L1PA4 6152 + 5975 6128 147530 20 0 5 128 chain 115302 chr13 115169878 + 105096868 105098373 L1PA8 5853 + 4311 5814 32681 16 1 0 7 2 0 300 0 1 109 0 2 108 0 5 30 5 1 111 12 10 74 0 7 258 2 0 171 1 0 42 4 3 42 2 0 71 1 0 13 0 1 47 2 1 19 1 0 54 chain 54779 chr13 115169878 + 105105136 105105954 L1PA13 3608 + 2687 3497 55856 212 0 1 17 0 1 87 0 4 92 51 40 19 1 0 66 2 0 48 2 0 61 1 0 54 1 0 7 2 0 18 0 7 22 2 0 5 2 0 18 1 0 16 0 4 11 chain 3539 chr13 115169878 + 105137716 105137881 L1MA8 2339 + 2183 2322 214714 15 6 0 25 96 76 23 chain 139587 chr13 115169878 + 105145684 105147393 L1PA7 6471 - 7 1712 26205 6 6 0 416 0 1 247 0 3 170 5 0 126 1 5 541 1 0 190 chain 25312 chr13 115169878 + 105158060 105158494 L1PA15 4387 + 3908 4328 103165 24 1 0 63 2 1 108 1 0 26 1 0 55 1 0 22 22 17 25 31 29 36 3 1 13 chain 274078 chr13 115169878 + 105170198 105174355 L1PA10 4194 - 33 3875 14972 11 1 0 9 1 2 182 0 1 154 0 7 1112 3 7 11 0 1 32 0 1 8 40 25 307 7 8 20 11 17 253 0 1 64 1 0 77 18 25 5 2 0 58 7 6 44 0 2 75 319 0 159 32 31 110 0 6 32 1 0 28 1 2 346 2 0 42 1 0 21 0 1 33 5 1 57 0 5 235 0 3 40 4 2 77 1 0 8 6 2 13 12 8 10 3 2 7 1 0 20 2 0 16 chain 61317 chr13 115169878 + 105212090 105213073 L1PA14 3548 - 92 1046 52196 39 1 0 18 2 1 11 1 0 9 4 2 33 20 15 107 5 7 77 1 0 6 2 0 13 12 8 93 1 0 11 16 12 41 21 17 18 5 0 110 0 2 117 1 0 153 2 1 33 chain 5414 chr13 115169878 + 105226177 105226243 MLT1E3 631 + 68 135 190857 42 0 1 24 chain 18359 chr13 115169878 + 105234595 105234850 L1PA16 3655 - 92 351 131911 199 1 0 4 18 23 33 chain 62764 chr13 115169878 + 105254099 105254866 L1PA7 6471 - 1 770 51553 105 10 11 38 12 13 602 chain 21946 chr13 115169878 + 105340274 105340531 L1P1 4361 + 4072 4327 120436 79 1 0 154 1 0 22 chain 17619 chr13 115169878 + 105367124 105367314 L1PA4 6152 + 5961 6151 133937 190 chain 51560 chr13 115169878 + 105368251 105368842 LTR10C 591 + 0 591 57917 591 chain 3443 chr13 115169878 + 105416389 105416428 MSTA 426 + 387 426 216305 39 chain 84777 chr13 115169878 + 105471939 105472896 L1PA6 6164 + 5199 6156 41603 957 chain 10755 chr13 115169878 + 105509549 105509673 L1PA5 6144 + 6012 6140 157177 73 0 4 51 chain 14441 chr13 115169878 + 105519316 105519506 THE1C 375 - 191 375 143076 21 6 0 163 chain 38629 chr13 115169878 + 105536385 105536985 L1PA11 4918 - 430 1028 71253 11 9 7 61 22 16 33 11 12 11 5 6 89 6 7 229 8 7 91 0 4 14 chain 212527 chr13 115169878 + 105574148 105578972 L1PB1 5432 + 1463 5413 18325 87 3 0 5 0 3 13 0 3 6 1 8 8 12 0 5 11 0 9 0 11 110 11 13 67 0 1 680 2 0 331 1 2 55 6 9 37 0 1 16 35 29 11 10 10 12 7 6 231 3 0 336 3 0 24 0 1 9 15 17 97 2 1 22 10 3 460 1732 902 21 1 0 11 20 15 6 1 0 15 2 0 29 0 1 8 2 1 16 1 0 44 1 0 15 23 12 19 24 19 24 1 0 21 1 0 13 1 0 9 chain 57334 chr13 115169878 + 105577123 105577757 L1PA4 6152 + 5333 5967 54320 634 chain 24616 chr13 115169878 + 105582301 105582645 THE1B 368 + 13 366 106910 31 9 24 13 7 6 82 1 0 22 3 1 112 2 0 62 chain 154175 chr13 115169878 + 105586235 105588029 L1PA5 6144 + 4344 6140 24077 631 0 1 286 3 5 27 1 0 846 chain 340798 chr13 115169878 + 105609556 105613323 L1PA3long 6157 - 0 4185 11879 338 0 1 1483 0 1 1361 0 417 237 2 1 346 chain 36004 chr13 115169878 + 105649967 105650387 L1PA5 6144 + 5693 6140 74892 44 0 26 240 0 1 136 chain 12896 chr13 115169878 + 105678580 105678762 MER30 238 - 0 192 148645 45 6 0 67 4 20 60 chain 29572 chr13 115169878 + 105708103 105708423 AluYb8 318 + 0 318 86320 132 2 0 186 chain 24779 chr13 115169878 + 105733315 105733742 L1PA15 4387 - 73 483 106006 44 10 7 21 0 1 5 1 0 12 8 8 13 4 0 18 1 0 43 23 22 16 1 0 29 7 1 142 1 0 28 chain 10121 chr13 115169878 + 105744957 105745104 L1PA15 4387 - 1298 1446 159991 31 16 17 100 chain 84652 chr13 115169878 + 105772369 105773420 MER11B 1079 - 5 1079 41658 86 0 1 215 16 20 125 0 11 253 0 5 99 3 0 29 0 5 225 chain 192286 chr13 115169878 + 105785553 105787706 L1PA4 6152 + 3980 6141 19838 357 0 2 123 0 1 841 0 4 510 0 1 322 chain 36041 chr13 115169878 + 105802242 105802645 L1PA5 6144 - 4 408 74847 334 0 1 69 chain 62594 chr13 115169878 + 105803107 105803805 L1PA4 6152 + 5305 6003 51633 698 chain 11800 chr13 115169878 + 105803805 105803944 L1PA4 6152 + 6004 6143 153044 139 chain 47125 chr13 115169878 + 105839316 105839835 L1PA4 6152 - 6 525 61106 519 chain 44691 chr13 115169878 + 105855885 105856449 L1PA7 6471 + 5903 6469 63386 52 6 11 493 3 0 10 chain 2558 chr13 115169878 + 105877389 105877477 L1MB5 1630 - 16 103 232379 13 19 18 14 14 15 5 1 0 22 chain 27690 chr13 115169878 + 105939529 105939909 THE1C 375 - 0 375 94078 25 1 0 164 2 3 44 9 10 18 11 5 106 chain 28306 chr13 115169878 + 105941491 105941844 THE1A 353 - 0 353 91916 90 0 1 151 1 0 111 chain 25070 chr13 115169878 + 105947665 105948016 THE1C 375 + 0 363 104460 107 9 10 68 1 0 48 0 11 56 0 1 33 2 3 13 1 0 13 chain 201157 chr13 115169878 + 105951535 105953713 L1PA2 6032 + 3854 6032 19128 2178 chain 21757 chr13 115169878 + 105967466 105967773 THE1A 353 + 0 305 121183 102 23 22 74 1 0 107 chain 13488 chr13 115169878 + 105999770 105999955 L1PA8 5853 + 5491 5674 146396 49 0 1 25 7 6 37 2 0 65 chain 19142 chr13 115169878 + 106020440 106020657 L1PA4 6152 - 1 219 129701 7 0 1 210 chain 80375 chr13 115169878 + 106034360 106035601 L1HS 6032 - 5099 6029 43444 15 1 0 330 309 0 332 1 0 253 chain 28390 chr13 115169878 + 106034715 106035015 AluYg6 310 - 10 310 91621 300 chain 460484 chr13 115169878 + 106035601 106040688 L1PA3long 6157 + 1053 6152 8384 1135 0 2 202 0 4 1634 0 6 2116 chain 44244 chr13 115169878 + 106060638 106061135 L1PA3long 6157 - 0 496 63890 339 1 0 157 chain 21411 chr13 115169878 + 106062557 106062846 AluY 311 + 18 300 122469 113 0 2 36 5 0 7 4 0 124 chain 4791 chr13 115169878 + 106075681 106075760 L1PB3 3668 + 3482 3566 197449 16 1 8 22 4 2 36 chain 20341 chr13 115169878 + 106076840 106077221 MLT2A2 560 - 60 560 126102 10 0 2 6 2 0 17 18 23 26 0 107 6 0 2 69 67 63 131 0 5 16 0 4 13 chain 12282 chr13 115169878 + 106157525 106157729 MLT2A2 560 - 0 325 151075 42 0 4 8 0 1 5 18 20 17 2 7 43 0 11 13 0 98 56 chain 45232 chr13 115169878 + 106171572 106172535 L1PB1 5432 + 4663 5422 62790 61 0 2 123 4 12 30 0 12 200 3 0 8 197 8 19 2 1 5 1 0 14 20 14 47 7 2 15 6 5 41 1 0 14 1 0 4 18 8 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 10 1 0 20 chain 32759 chr13 115169878 + 106206572 106207003 MER57A1 433 - 0 433 79600 27 0 1 118 1 7 10 5 0 270 chain 14260 chr13 115169878 + 106211145 106211496 Tigger2a 444 - 0 335 143678 29 124 116 54 4 8 121 12 0 7 chain 23943 chr13 115169878 + 106239081 106239362 L1PA7 6471 + 6173 6454 110659 281 chain 27034 chr13 115169878 + 106244836 106245228 MLT2A1 477 - 93 477 96167 17 8 0 115 9 11 66 9 6 70 0 1 98 chain 12756 chr13 115169878 + 106319042 106319319 THE1B 368 - 72 358 149229 34 0 1 7 72 78 41 27 29 96 chain 21511 chr13 115169878 + 106347095 106347466 THE1B 368 + 0 368 122100 73 71 72 25 6 4 18 2 0 176 chain 62413 chr13 115169878 + 106352437 106353133 L1PA4 6152 - 10 706 51718 696 chain 9611 chr13 115169878 + 106367490 106367781 L1MA4 2864 + 2558 2809 162535 85 1 0 8 144 107 7 2 0 44 chain 91299 chr13 115169878 + 106396012 106397018 L1PA3long 6157 + 5150 6155 39197 861 1 0 144 chain 71110 chr13 115169878 + 106398682 106399827 L1PA7 6471 + 5633 6470 47883 70 1 0 434 307 0 333 chain 12507 chr13 115169878 + 106405799 106405940 L1PA4 6152 - 1577 1718 149509 141 chain 138480 chr13 115169878 + 106405940 106407493 L1PA4 6152 + 4593 6143 26395 1277 3 0 273 chain 3901 chr13 115169878 + 106435260 106435306 Tigger2b_Pri 1066 + 165 211 208837 46 chain 22212 chr13 115169878 + 106444651 106444918 AluSp 311 + 21 288 119290 267 chain 8215 chr13 115169878 + 106465385 106465497 L1PA8 5853 + 5742 5853 169861 18 2 1 92 chain 4933 chr13 115169878 + 106481488 106481547 MSTA 426 + 355 414 195892 59 chain 6853 chr13 115169878 + 106509964 106510045 LTR26 622 + 526 607 178551 81 chain 3085 chr13 115169878 + 106519625 106519660 MER20 218 + 116 151 223178 35 chain 529051 chr13 115169878 + 106536804 106542864 L1PA5 6144 - 3 6141 4294 491 0 14 751 8 13 880 0 25 464 0 1 137 0 1 194 2 1 205 1 0 283 0 1 347 2 0 315 5 32 182 0 3 854 0 4 514 1 2 424 chain 10350 chr13 115169878 + 106576438 106576622 Tigger1 2417 + 285 951 158904 42 22 500 39 13 15 59 0 2 9 chain 24570 chr13 115169878 + 106581993 106582379 MLT2A2 560 + 0 498 107147 49 0 1 130 1 0 16 30 31 23 3 0 42 0 98 10 2 13 45 0 5 35 chain 37611 chr13 115169878 + 106610285 106610833 MLT2A2 560 - 0 560 72670 38 16 17 92 3 14 9 1 2 46 0 1 161 4 3 31 8 7 139 chain 38056 chr13 115169878 + 106615572 106616098 L1PA8 5853 - 0 522 72051 93 1 0 16 1 0 43 10 23 45 18 5 20 2 0 43 2 1 138 0 1 94 chain 23971 chr13 115169878 + 106623281 106623554 L1PA3long 6157 - 0 272 110506 153 1 0 119 chain 47086 chr13 115169878 + 106628364 106628958 THE1B-int 1605 - 11 603 61136 36 0 1 258 6 3 294 chain 7629 chr13 115169878 + 106638014 106638111 MLT1D 503 + 406 503 173357 97 chain 83715 chr13 115169878 + 106652053 106652993 L1PA3long 6157 + 5229 6157 42031 79 0 1 825 14 1 22 chain 10648 chr13 115169878 + 106653774 106653906 L1MA3 4352 - 303 436 157611 65 0 1 67 chain 208315 chr13 115169878 + 106666684 106669019 L1PA5 6144 - 14 2359 18617 126 0 2 707 0 4 682 2 1 263 0 4 409 0 1 146 chain 4553 chr13 115169878 + 106708270 106708319 MER5A 189 + 119 168 200186 49 chain 8954 chr13 115169878 + 106720067 106720180 L1MB8 1703 + 1452 1564 165856 41 1 0 71 chain 18291 chr13 115169878 + 106754702 106755032 THE1C 375 - 38 370 132100 143 20 21 55 40 41 23 10 7 34 0 3 5 chain 11090 chr13 115169878 + 106758167 106758345 MER30 238 + 31 229 155844 84 14 43 9 6 0 32 3 0 30 chain 4199 chr13 115169878 + 106760832 106760900 MER5A 189 + 20 89 204553 51 5 6 12 chain 6407 chr13 115169878 + 106807749 106807827 5S 121 - 31 109 181964 78 chain 133201 chr13 115169878 + 106816266 106817863 L1PA7 6471 - 10 1640 27392 152 1 2 628 0 13 35 0 10 77 0 1 49 0 1 392 0 6 149 0 1 114 chain 46366 chr13 115169878 + 106817863 106818423 L1P2 5180 + 1695 2254 61566 257 1 0 107 6 6 189 chain 45573 chr13 115169878 + 106841780 106842520 L1PB1 5432 + 4708 5422 62436 155 0 1 239 4 3 8 1 0 24 1 0 5 2 1 12 8 4 8 0 2 50 2 1 9 7 6 31 0 2 11 1 0 14 26 14 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 19672 chr13 115169878 + 106845640 106845867 L1PA7 6471 + 6234 6461 128192 227 chain 22264 chr13 115169878 + 106853889 106854170 AluSp 311 + 13 299 119056 193 14 19 74 chain 553772 chr13 115169878 + 106865889 106871904 L1PA2 6032 + 0 6032 976 479 0 1 541 0 2 2108 0 4 2564 0 3 153 0 9 155 2 0 13 chain 18840 chr13 115169878 + 106949598 106949953 MSTA 426 + 5 411 130544 92 12 16 41 15 21 52 25 23 22 0 23 16 6 9 45 9 26 20 chain 4578 chr13 115169878 + 106950401 106950469 Charlie1a 1436 + 920 990 199902 31 6 8 31 chain 17929 chr13 115169878 + 106954807 106955023 L1PA5 6144 - 0 213 133034 10 4 0 144 0 1 58 chain 177205 chr13 115169878 + 106959912 106961940 L1PA6 6164 + 4119 6158 21232 246 0 4 279 0 1 613 0 2 55 0 1 78 1 0 612 0 1 26 0 3 118 chain 3549 chr13 115169878 + 107036524 107036566 L1MA4 2864 + 2768 2810 214548 42 chain 44722 chr13 115169878 + 107060349 107061029 L1PB1 5432 - 5 827 63357 5 2 0 18 1 0 13 4 3 18 1 0 17 9 7 15 1 0 4 2 0 15 49 35 41 8 7 14 1 166 148 0 2 294 chain 19242 chr13 115169878 + 107080111 107080378 AluSx1 309 + 0 284 129407 143 22 39 102 chain 15703 chr13 115169878 + 107149892 107150075 L1PA5 6144 - 2 185 139254 183 chain 32699 chr13 115169878 + 107257462 107257857 MER41A 554 + 0 395 79691 395 chain 6803 chr13 115169878 + 107258534 107258623 L1MA9 1812 + 265 355 178932 70 1 2 18 chain 23011 chr13 115169878 + 107262408 107262768 THE1D 372 + 2 372 115571 53 16 23 26 0 1 61 24 27 147 1 0 32 chain 38559 chr13 115169878 + 107264005 107264531 MLT2A2 560 + 0 548 71356 58 0 1 135 12 15 188 5 16 24 0 7 56 1 0 5 0 1 42 chain 30842 chr13 115169878 + 107302559 107302945 MLT2A1 477 + 0 383 82781 169 4 1 213 chain 10416 chr13 115169878 + 107319840 107320155 MLT1B 390 - 17 365 158613 99 149 171 5 0 1 27 11 21 24 chain 24451 chr13 115169878 + 107328486 107328852 THE1B 368 - 0 367 107800 40 10 8 27 1 0 98 1 3 20 12 11 119 0 5 24 2 0 12 chain 20050 chr13 115169878 + 107359761 107360139 THE1D 372 - 0 372 126979 161 44 45 48 33 38 6 3 0 27 17 8 39 chain 6227 chr13 115169878 + 107369677 107369753 L1MB7 1623 - 1505 1581 183341 76 chain 21299 chr13 115169878 + 107374382 107374666 L1PA6 6164 + 5886 6162 122869 116 0 8 10 15 0 93 2 1 48 chain 20688 chr13 115169878 + 107388210 107388460 AluY 311 + 27 277 125008 96 1 0 9 0 1 144 chain 561131 chr13 115169878 + 107430593 107436746 L1PA3long 6157 - 0 6153 310 6153 chain 12513 chr13 115169878 + 107472502 107472679 L1PA5 6144 + 5955 6142 150191 17 12 26 137 4 0 7 chain 57955 chr13 115169878 + 107477364 107478038 L1PA5 6144 + 5461 6139 53999 398 0 3 91 6 7 179 chain 19392 chr13 115169878 + 107514774 107515192 L1PB1 5432 + 5031 5418 128969 72 13 11 24 1 0 9 1 0 9 10 6 5 2 0 46 7 6 17 1 0 45 1 0 15 3 0 6 16 6 19 8 5 14 2 0 18 11 13 14 1 0 13 1 0 14 chain 5437 chr13 115169878 + 107515844 107515942 MER3 215 + 13 132 190637 13 16 37 69 chain 554203 chr13 115169878 + 107581679 107587707 L1PA2 6032 - 0 6028 926 628 1 0 3691 0 1 1708 chain 4903 chr13 115169878 + 107620064 107620151 L1MB1 2102 - 124 209 196247 24 15 13 48 chain 8004 chr13 115169878 + 107639397 107639488 L1PA8 5853 - 0 91 171026 91 chain 70500 chr13 115169878 + 107644700 107645596 L1PA8A 6298 + 5388 6291 48165 101 0 3 208 0 3 461 14 17 6 2 0 104 chain 43722 chr13 115169878 + 107665533 107666069 MLT2A2 560 + 0 548 64541 203 0 1 118 0 11 215 chain 36107 chr13 115169878 + 107675582 107676502 LTR9B 643 + 0 643 74756 126 70 17 51 14 16 124 4 3 73 289 62 28 7 0 10 7 17 16 5 0 32 24 28 40 chain 3182 chr13 115169878 + 107675720 107675757 LTR9B 643 + 82 119 221278 37 chain 30992 chr13 115169878 + 107679124 107679488 L1PA6 6164 + 5792 6156 82534 111 0 1 112 1 0 140 chain 122256 chr13 115169878 + 107692732 107694212 L1P3 4156 - 17 1499 30294 24 2 1 7 2 0 100 0 2 36 0 1 181 1 2 78 0 1 1049 chain 59557 chr13 115169878 + 107708152 107708818 L1PA4 6152 - 16 686 53078 65 0 3 29 0 1 572 chain 23820 chr13 115169878 + 107711394 107711757 THE1C 375 - 0 375 111362 26 1 0 100 52 64 4 0 1 180 chain 27701 chr13 115169878 + 107714781 107715068 AluYa5 310 - 23 310 94039 287 chain 60547 chr13 115169878 + 107742616 107743383 L1PA8 5853 + 5091 5853 52546 471 1 0 47 2 0 69 2 1 8 2 1 52 2 1 22 1 0 72 0 2 16 chain 16850 chr13 115169878 + 107756171 107756480 L1MA8 2339 - 409 724 135979 25 25 28 36 4 0 65 4 0 74 0 16 25 24 19 27 chain 7026 chr13 115169878 + 107780423 107780510 THE1D 372 - 40 127 177289 87 chain 27717 chr13 115169878 + 107798706 107799157 MLT2A2 560 + 0 560 93983 55 10 12 101 62 59 68 8 118 147 chain 55271 chr13 115169878 + 107829317 107830113 L1MA3 4352 + 2327 3097 55542 241 0 5 16 1 0 100 31 0 169 14 16 86 0 4 6 6 1 126 chain 3832 chr13 115169878 + 107832373 107832451 L1MA3 4352 + 4253 4326 209888 5 2 0 24 8 6 29 1 0 9 chain 56571 chr13 115169878 + 107835667 107836540 L1PA7 6471 + 5786 6470 54811 580 188 0 86 1 0 18 chain 59995 chr13 115169878 + 107846638 107847531 L1PB2 3958 + 2784 3672 52830 4 0 1 66 28 31 38 1 0 278 9 15 84 12 10 51 1 0 16 4 0 61 2 0 17 4 0 81 4 3 59 0 1 17 1 0 55 chain 20998 chr13 115169878 + 107853682 107853953 AluY 311 + 40 304 123926 248 2 0 7 5 0 9 chain 19736 chr13 115169878 + 107857352 107857590 L1PA2 6032 - 0 236 127993 89 2 1 60 2 1 85 chain 13223 chr13 115169878 + 107889845 107890026 MER2 342 - 80 262 147375 151 3 4 27 chain 28087 chr13 115169878 + 107923013 107923321 L1PA4 6152 - 0 308 92692 308 chain 30427 chr13 115169878 + 107924543 107924861 AluYb8 318 - 0 318 83627 318 chain 20927 chr13 115169878 + 107950455 107950728 AluY 311 + 40 311 124187 83 1 0 4 1 2 144 2 0 38 chain 84033 chr13 115169878 + 107963989 107964930 L1PA4 6152 + 5211 6152 41890 90 1 0 737 0 1 113 chain 51504 chr13 115169878 + 107965654 107966392 MER4A 717 + 1 717 57963 88 3 4 35 29 3 186 20 18 138 1 5 30 0 1 208 chain 76821 chr13 115169878 + 107968255 107969133 L1PA5 6144 - 8 890 45074 177 1 0 4 0 1 659 0 4 37 chain 29744 chr13 115169878 + 107981851 107982205 L1PA4 6152 - 1 352 85681 166 11 7 85 0 1 92 chain 26092 chr13 115169878 + 107995652 107996007 THE1B 368 + 0 366 99657 44 6 21 43 1 0 64 1 0 19 3 1 174 chain 17053 chr13 115169878 + 108000787 108001035 L1PA8 5853 - 0 244 135451 92 5 4 14 5 4 51 1 0 9 4 3 67 chain 38180 chr13 115169878 + 108003640 108004130 MER65D 500 + 0 500 71869 129 2 16 46 0 1 151 4 0 94 1 0 63 chain 56774 chr13 115169878 + 108043576 108044328 MER4E 760 + 0 751 54670 17 0 1 331 1 2 109 2 4 20 0 4 39 11 0 20 1 2 61 1 0 128 0 2 11 chain 73730 chr13 115169878 + 108082639 108083467 L1PA4 6152 - 0 819 46657 154 9 0 665 chain 4996 chr13 115169878 + 108085877 108085933 L1PA3long 6157 + 6101 6157 195191 56 chain 24669 chr13 115169878 + 108148977 108149336 THE1B 368 - 0 368 106618 166 3 0 25 19 18 94 6 21 31 2 0 13 chain 67633 chr13 115169878 + 108152713 108153460 L1PA3long 6157 + 5408 6157 49394 502 0 2 245 chain 38059 chr13 115169878 + 108187334 108187763 L1PA5 6144 - 1802 2235 71792 112 0 4 317 chain 160889 chr13 115169878 + 108187763 108189576 L1PA5 6144 + 4321 6132 23212 900 6 5 585 1 0 321 chain 14001 chr13 115169878 + 108232023 108232177 L1PA2 6032 - 3 157 144572 154 chain 42233 chr13 115169878 + 108232179 108232640 L1PA2 6032 + 5403 5864 66358 461 chain 46601 chr13 115169878 + 108248581 108249171 L1PA7 6471 + 5872 6460 61530 432 7 4 16 1 0 5 0 1 58 1 2 70 chain 21643 chr13 115169878 + 108251524 108251787 AluY 311 + 38 300 121601 79 11 10 173 chain 11613 chr13 115169878 + 108302781 108303076 L1PB1 5432 + 5158 5430 153839 11 3 1 50 2 1 17 1 0 43 79 65 24 1 0 21 1 0 13 4 3 13 1 0 4 1 0 6 chain 191115 chr13 115169878 + 108306729 108309507 L1PB1 5432 + 2699 5422 19950 127 20 17 47 4 7 110 4 1 596 6 0 83 1 0 49 1 0 127 1 0 129 8 7 27 7 9 492 2 5 93 4 1 46 2 1 5 0 1 125 1 0 30 18 19 245 14 16 24 1 0 4 3 2 13 20 14 49 2 1 16 1 0 45 1 0 14 19 0 9 9 1 20 12 9 11 2 0 24 1 0 22 1 0 12 4 3 15 chain 5353 chr13 115169878 + 108339059 108339141 L1PA17 2846 + 2611 2691 191508 19 5 4 15 1 0 42 chain 23166 chr13 115169878 + 108345256 108345516 L1PA6 6164 - 407 667 114833 260 chain 24424 chr13 115169878 + 108345516 108345825 L1PA6 6164 + 5850 6160 107941 154 8 6 7 0 3 140 chain 29094 chr13 115169878 + 108359263 108359569 AluYa5 310 - 4 310 88579 306 chain 24238 chr13 115169878 + 108367556 108367849 AluSp 311 - 18 311 109007 293 chain 90025 chr13 115169878 + 108379926 108381046 L1PA8 5853 + 4744 5853 39639 266 11 9 70 5 0 285 0 3 187 1 0 46 2 0 72 2 1 5 1 0 52 2 1 19 2 1 92 chain 4013 chr13 115169878 + 108391379 108391424 L1PA8 5853 + 5564 5609 207187 45 chain 8357 chr13 115169878 + 108391426 108391552 L1PA8 5853 + 5609 5734 169087 6 0 1 63 1 0 9 9 8 38 chain 9375 chr13 115169878 + 108391560 108391672 L1PA8 5853 + 5741 5853 163684 112 chain 86797 chr13 115169878 + 108421103 108422051 L1PA2 6032 + 5084 6032 40854 948 chain 22480 chr13 115169878 + 108424367 108424685 MER41C 542 + 195 535 118112 116 17 38 36 2 3 147 chain 21730 chr13 115169878 + 108425991 108426237 L1PA4 6152 + 5905 6152 121277 103 0 1 143 chain 62575 chr13 115169878 + 108427405 108428095 L1PA3long 6157 - 1 690 51638 9 1 0 680 chain 165294 chr13 115169878 + 108434370 108436228 SVA_D 2077 + 0 2077 22615 20 0 3 192 0 1 696 1 0 2 0 38 40 0 1 41 1 4 16 0 127 158 0 50 377 1 0 304 2 0 7 chain 31129 chr13 115169878 + 108436945 108437386 L1P5 443 + 3 433 82285 4 1 0 126 0 8 10 1 0 3 8 0 255 9 0 24 chain 12047 chr13 115169878 + 108437693 108437932 L1PB1 5432 + 5109 5327 151998 5 1 0 24 1 0 9 16 11 9 2 0 53 2 1 12 2 4 44 1 0 15 3 0 11 14 5 15 chain 4276 chr13 115169878 + 108539226 108539275 MSTA 426 - 2 51 203517 49 chain 25448 chr13 115169878 + 108543944 108544223 L1PA2 6032 + 5753 6031 102465 127 1 0 151 chain 400238 chr13 115169878 + 108544366 108549168 HERV9-int 5642 - 904 5631 10090 25 0 2 1829 1 0 1213 1 0 82 1 2 6 1 0 473 3 0 5 1 0 5 0 1 31 68 0 203 2 0 70 8 7 124 1 0 649 chain 58855 chr13 115169878 + 108549200 108549978 LTR12 884 - 0 884 53485 23 5 1 152 1 0 331 2 0 33 24 8 5 2 0 122 1 133 51 1 0 25 chain 2965 chr13 115169878 + 108556706 108556738 THE1B 368 - 252 284 225773 32 chain 37094 chr13 115169878 + 108563090 108563552 LTR2 463 + 0 463 73389 362 12 13 88 chain 11512 chr13 115169878 + 108565208 108565440 THE1D 372 + 124 370 154245 40 67 82 100 1 0 24 chain 11786 chr13 115169878 + 108567345 108567475 L1PA4 6152 - 1 131 153105 130 chain 553333 chr13 115169878 + 108573028 108579054 L1PA2 6032 - 11 6032 1032 4613 5 0 1408 chain 124874 chr13 115169878 + 108587309 108588675 L1PA3long 6157 - 2 1368 29432 1366 chain 50409 chr13 115169878 + 108603320 108603961 LTR12 884 - 0 884 58706 202 0 111 68 0 1 125 2 0 85 0 133 159 chain 20917 chr13 115169878 + 108604009 108604483 L1MA1 4479 + 3669 4129 124223 15 39 38 17 2 0 14 19 20 54 1 0 19 16 13 88 31 26 64 44 43 27 2 0 22 chain 3803 chr13 115169878 + 108622551 108622597 THE1A-int 1579 + 1525 1574 210361 41 0 3 5 chain 24526 chr13 115169878 + 108622609 108622945 THE1A 353 + 0 353 107406 26 0 1 82 2 1 67 5 21 102 1 2 51 chain 22055 chr13 115169878 + 108652062 108652402 THE1B 368 + 0 356 119999 169 1 0 22 46 62 39 0 1 63 chain 77675 chr13 115169878 + 108669339 108670358 MER11A 1151 + 0 1151 44668 55 0 99 43 0 3 28 1 0 64 8 4 147 0 1 93 0 1 146 0 1 150 24 56 29 0 1 191 2 1 38 chain 52824 chr13 115169878 + 108676174 108676876 L1PA8 5853 - 0 700 57122 31 0 1 61 1 0 16 1 0 32 0 1 4 1 0 12 6 5 11 1 0 71 3 1 45 1 0 115 4 7 111 8 9 167 chain 9326 chr13 115169878 + 108693811 108694034 L1PA11 4918 - 354 559 163916 10 1 0 15 13 9 10 8 3 9 4 0 19 31 28 67 2 1 34 chain 40974 chr13 115169878 + 108694182 108694718 PRIMA4_LTR 623 + 0 623 67948 175 0 23 61 2 4 69 0 59 43 0 1 111 4 6 71 chain 60569 chr13 115169878 + 108694798 108695632 MER11A 1151 + 0 1144 52532 85 0 91 118 4 0 149 0 1 29 19 13 50 1 2 44 0 189 50 8 41 26 1 2 30 0 1 46 2 0 16 0 1 127 0 4 29 chain 5114 chr13 115169878 + 108715313 108715397 L1MA3 4352 + 44 127 193918 60 11 10 13 chain 59285 chr13 115169878 + 108719963 108721558 MER4E1 777 + 0 769 53235 25 0 1 142 339 0 115 472 3 104 0 1 157 19 0 117 14 13 91 chain 38146 chr13 115169878 + 108736782 108737229 LTR10F 562 + 0 562 71918 116 0 115 331 chain 4201 chr13 115169878 + 108742107 108742488 MLT1C 463 + 57 463 204527 26 35 26 15 200 236 31 53 51 21 chain 44601 chr13 115169878 + 108755974 108756614 LTR71B 605 - 0 605 63480 48 4 5 203 43 12 175 14 10 9 1 0 143 chain 23765 chr13 115169878 + 108770787 108771068 AluSc 308 - 16 297 111678 281 chain 5954 chr13 115169878 + 108803767 108803838 MER72 723 - 2 73 185645 71 chain 9839 chr13 115169878 + 108814979 108815089 L1PA5 6144 - 6 116 161397 110 chain 238951 chr13 115169878 + 108822925 108826679 L1PA14 3548 + 90 3485 16833 32 43 0 8 0 40 34 8 5 8 1 0 15 8 7 29 2 0 27 16 14 147 1 0 37 0 1 270 1 3 283 5 6 153 6 5 230 8 6 7 0 1 30 0 2 6 0 5 18 0 3 5 16 8 260 2 1 439 0 1 4 1 0 146 2 0 73 5 6 70 6 5 148 1 0 17 3 10 61 320 0 162 4 2 13 2 0 45 2 0 7 2 0 109 4 0 17 9 6 84 1 0 111 1 0 10 5 1 34 32 28 9 1 0 41 6 0 10 1 0 20 chain 46361 chr13 115169878 + 108830408 108831088 LTR12_ 688 + 0 688 61719 97 7 23 18 18 2 38 5 29 17 1 0 67 24 0 45 1 2 214 0 8 128 chain 23979 chr13 115169878 + 108869581 108869872 AluSp 311 + 0 286 110450 120 4 0 95 1 0 71 chain 209087 chr13 115169878 + 108890005 108892291 L1PA3long 6157 - 2 2291 18562 2193 0 2 72 0 1 21 chain 3290 chr13 115169878 + 108899349 108899458 MER44D 709 - 150 263 219175 6 0 3 15 55 56 33 chain 168877 chr13 115169878 + 108906518 108908411 L1PA4 6152 - 0 1896 22178 8 0 1 245 1 0 370 0 2 423 0 1 377 0 1 95 1 0 373 chain 70107 chr13 115169878 + 108908411 108909188 L1PA3long 6157 + 5379 6156 48349 777 chain 34722 chr13 115169878 + 108920122 108920701 L1PB1 5432 + 4877 5422 76589 223 7 6 8 1 0 20 1 0 13 1 0 4 9 4 4 0 1 7 2 0 53 2 1 57 3 2 16 2 0 6 1 0 11 9 0 11 15 10 12 2 0 24 1 0 21 2 1 12 1 0 18 chain 41974 chr13 115169878 + 108929834 108930373 MER41A 554 - 0 554 66652 278 0 11 47 1 3 156 0 2 57 chain 35541 chr13 115169878 + 108939217 108939620 L1PA4 6152 + 5717 6143 75487 166 0 23 237 chain 7049 chr13 115169878 + 108951360 108951453 L1MC 810 - 341 444 177116 17 0 10 76 chain 21924 chr13 115169878 + 108970998 108971299 L1PA15 4387 - 131 425 120530 39 1 0 11 4 0 21 1 0 55 1 0 26 1 0 60 0 1 81 chain 11974 chr13 115169878 + 108971299 108971441 LTR2 463 - 0 142 152309 142 chain 5830 chr13 115169878 + 108998657 108998727 L1PA6 6164 - 4 72 186864 6 2 0 62 chain 22226 chr13 115169878 + 108999747 109000000 L1PA6 6164 - 2 255 119227 253 chain 4353 chr13 115169878 + 109036569 109036665 MER20 218 - 25 112 202545 12 0 1 14 32 22 38 chain 5722 chr13 115169878 + 109042200 109042331 MER67D 511 - 181 325 187908 15 30 42 20 9 10 57 chain 25319 chr13 115169878 + 109043467 109043792 L1PA7 6471 - 1 330 103123 151 1 0 6 10 15 157 chain 26464 chr13 115169878 + 109044927 109045233 AluY 311 + 3 310 98187 129 0 1 177 chain 70015 chr13 115169878 + 109065546 109066439 L1PA8 5853 - 0 891 48387 93 1 0 18 4 3 48 1 0 12 2 1 68 0 2 44 1 0 177 0 1 9 0 3 365 6 3 44 chain 27098 chr13 115169878 + 109084182 109084470 AluYa5 310 + 0 287 95950 97 1 0 190 chain 23746 chr13 115169878 + 109088750 109089048 L1PA4 6152 - 1 301 111799 142 7 8 128 0 1 21 chain 2731 chr13 115169878 + 109095416 109095489 MLT1F1 559 + 377 509 229730 14 30 89 29 chain 39875 chr13 115169878 + 109117784 109118254 L1P1 4361 - 20 488 69497 12 2 1 23 1 0 155 1 0 100 0 1 176 chain 18606 chr13 115169878 + 109123569 109123947 THE1D 372 + 0 372 131204 51 1 2 9 4 0 6 22 7 45 23 26 39 5 8 31 16 22 79 1 2 9 4 3 33 chain 22369 chr13 115169878 + 109134373 109134711 AluY 311 + 0 288 118630 51 30 0 34 0 12 32 33 0 80 0 1 78 chain 3263 chr13 115169878 + 109139523 109139580 L1PB1 5432 + 5346 5404 219727 24 1 0 15 4 6 13 chain 15352 chr13 115169878 + 109141166 109141393 L1MA2 4263 + 145 378 140336 17 2 0 30 0 2 56 2 1 80 1 8 39 chain 12081 chr13 115169878 + 109162017 109162156 L1PA4 6152 + 6013 6152 151869 139 chain 566054 chr13 115169878 + 109162820 109168843 L1HS 6032 - 0 6025 149 763 0 1 1906 0 1 3354 chain 58649 chr13 115169878 + 109237443 109238196 MER4E 760 - 0 760 53605 11 0 1 261 3 0 5 9 13 35 1 0 51 8 14 199 1 0 152 0 1 17 chain 53967 chr13 115169878 + 109251205 109251803 L1PA3long 6157 - 8 612 56391 153 0 6 445 chain 15981 chr13 115169878 + 109301387 109301574 L1PA4 6152 + 5956 6143 138402 187 chain 116892 chr13 115169878 + 109306892 109308453 THE1A-int 1579 + 0 1574 32163 473 7 8 121 63 63 320 10 23 140 4 3 423 chain 23513 chr13 115169878 + 109308458 109308811 THE1A 353 + 0 353 113058 46 0 1 49 1 0 10 38 39 74 1 0 134 chain 223541 chr13 115169878 + 109312633 109315609 L1PBa1 4058 - 1034 4047 17683 124 0 4 162 5 4 263 5 0 97 4 16 323 2 4 111 0 1 6 1 0 238 10 9 40 0 1 5 10 9 219 2 3 442 0 1 231 0 13 39 5 2 26 17 16 49 1 0 77 13 12 32 0 21 369 1 0 5 5 3 11 1 0 25 chain 29659 chr13 115169878 + 109322052 109322437 L1PA8 5853 + 5475 5853 86027 87 1 0 48 2 0 68 2 1 14 1 0 43 6 5 19 1 0 93 chain 532332 chr13 115169878 + 109387463 109393623 L1PA5 6144 - 1 6144 3928 140 0 4 7 3 0 215 31 0 490 1 0 330 0 1 154 0 1 323 0 2 125 0 4 661 0 2 404 0 1 27 0 2 92 2 0 72 0 1 227 2 0 663 0 2 175 2 1 312 1 2 689 0 1 534 6 7 472 chain 24335 chr13 115169878 + 109409833 109410110 L1PA4 6152 - 0 282 108447 6 0 5 271 chain 23629 chr13 115169878 + 109434008 109434321 THE1A 353 + 0 310 112418 51 3 1 59 1 0 199 chain 129958 chr13 115169878 + 109434364 109435932 THE1A-int 1579 + 0 1574 28097 440 0 2 512 3 6 216 1 2 396 chain 23613 chr13 115169878 + 109435944 109436256 THE1A 353 + 7 323 112511 103 1 0 92 10 15 106 chain 23256 chr13 115169878 + 109445376 109445653 AluY 311 + 27 302 114411 106 2 0 169 chain 58817 chr13 115169878 + 109448605 109449267 L1PA4 6152 + 5481 6141 53510 608 2 0 52 chain 29654 chr13 115169878 + 109451036 109451352 AluYb8 318 - 2 318 86054 316 chain 83669 chr13 115169878 + 109482196 109483113 L1PA3long 6157 + 5235 6152 42047 917 chain 140674 chr13 115169878 + 109531712 109533302 L1PA5 6144 - 0 1591 26041 161 0 1 1429 chain 91313 chr13 115169878 + 109533302 109534434 L1P2 5180 + 626 1782 39111 161 1 0 6 2 1 121 0 1 6 0 25 835 chain 90630 chr13 115169878 + 109552761 109553821 MER11C 1089 + 0 1073 39413 252 0 7 175 5 10 142 12 13 474 chain 27722 chr13 115169878 + 109566028 109566392 MER57A1 433 + 0 368 93962 196 2 5 67 9 10 90 chain 21951 chr13 115169878 + 109607921 109608189 AluSg4 309 + 1 271 120424 78 0 2 190 chain 24129 chr13 115169878 + 109638238 109638604 THE1B 368 - 0 368 109591 56 7 6 64 1 0 11 1 0 17 0 4 10 1 0 4 18 22 5 2 0 169 chain 39421 chr13 115169878 + 109647788 109648235 L1PA4 6152 - 0 447 70130 447 chain 25271 chr13 115169878 + 109648235 109648514 L1PA4 6152 + 5445 5725 103362 34 0 1 245 chain 506634 chr13 115169878 + 109665326 109671300 L1PA6 6164 - 11 6162 6425 136 3 1 281 0 1 900 0 1 303 1 0 168 0 4 112 0 1 97 0 1 623 0 1 940 0 4 220 0 2 5 6 4 21 4 0 745 0 3 127 1 0 896 16 185 369 chain 4337 chr13 115169878 + 109708348 109708398 MER58A 224 + 27 77 202757 50 chain 30874 chr13 115169878 + 109711892 109712272 L1PA8 5853 - 779 1161 82726 65 0 2 315 chain 58145 chr13 115169878 + 109712272 109712998 L1PA8 5853 + 5127 5853 53904 25 0 5 275 0 1 87 0 1 45 1 0 42 2 0 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 3944 chr13 115169878 + 109727052 109727266 THE1C 375 - 210 375 208214 26 8 12 13 118 67 27 7 5 15 chain 32288 chr13 115169878 + 109746881 109747273 L1PA7 6471 - 7 425 80380 168 0 27 136 1 0 87 chain 3443 chr13 115169878 + 109795017 109795082 MER51A 677 + 176 231 216327 24 12 1 4 0 1 25 chain 4391 chr13 115169878 + 109812488 109812538 MER20 218 - 139 189 202063 50 chain 7782 chr13 115169878 + 109821395 109821543 L1PB4 2604 - 32 179 172406 16 14 13 42 5 9 5 0 2 6 6 0 54 chain 20842 chr13 115169878 + 109841470 109841724 MLT2A2 560 - 306 560 124481 254 chain 3359 chr13 115169878 + 109842089 109842131 L1MEf 1413 - 283 325 217883 42 chain 53384 chr13 115169878 + 109853981 109854887 L1PB1 5432 - 20 790 56777 8 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 16 24 13 8 0 1 9 4 3 41 1 0 17 1 0 52 2 0 8 2 0 3 2 0 10 6 8 24 1 0 11 110 0 461 chain 57920 chr13 115169878 + 109854888 109855677 L1PB1 5432 + 3801 4599 54021 190 0 3 91 15 19 4 0 1 110 0 1 262 33 30 5 0 3 79 chain 3277 chr13 115169878 + 109869036 109869073 MLT2A1 477 - 0 37 219415 37 chain 29163 chr13 115169878 + 109871300 109871675 MLT2A1 477 - 95 469 88237 177 0 1 24 0 1 9 5 2 160 chain 460427 chr13 115169878 + 109871676 109877317 HERVL-int 5654 - 0 5654 8386 425 10 5 22 1 0 228 0 4 391 0 1 612 0 2 53 0 10 430 0 2 6 2 0 782 7 8 160 0 1 156 0 1 99 1 0 185 0 1 176 4 1 415 0 1 438 5 7 108 1 0 81 0 1 26 0 3 111 1 0 6 3 0 696 chain 3320 chr13 115169878 + 109877317 109877352 MLT2A1 477 - 0 35 218598 35 chain 27399 chr13 115169878 + 109917437 109917859 LTR7Y 441 + 0 431 94973 96 18 9 55 68 84 79 0 1 91 0 1 15 chain 287696 chr13 115169878 + 109917869 109921795 HERVH-int 3825 + 0 3727 14179 532 127 0 10 64 0 28 1 0 10 1 0 24 70 0 15 1 0 12 3 0 10 28 11 4 1 0 42 2 1 52 0 1 11 0 2 13 0 3 660 0 1 241 10 33 176 1 0 123 0 10 949 166 1 41 1 0 54 9 11 39 8 218 260 0 2 127 chain 5565 chr13 115169878 + 109918401 109918462 HERVH-int 3825 + 471 532 181420 61 chain 2460 chr13 115169878 + 109918495 109918523 HERVH-int 3825 + 504 532 233583 28 chain 28926 chr13 115169878 + 109923031 109923464 LTR7Y 441 + 0 441 89342 96 18 9 55 68 84 171 0 1 25 chain 20887 chr13 115169878 + 109947294 109947567 THE1B 368 - 0 269 124331 67 2 0 68 2 1 63 1 0 70 chain 127666 chr13 115169878 + 109963268 109964745 SVA_B 1603 + 44 1601 28652 158 1 0 468 0 3 140 42 43 65 4 0 20 0 81 579 chain 3995 chr13 115169878 + 109968495 109968540 MLT2B2 565 - 0 45 207462 45 chain 193784 chr13 115169878 + 109972840 109975804 L1PB1 5432 + 2795 5392 19703 927 29 14 219 2 0 610 2 0 52 4 6 437 0 1 42 19 14 21 1 0 9 335 11 9 2 0 53 19 17 32 0 1 10 1 0 16 1 0 4 18 8 19 11 8 11 3 1 23 6 5 17 chain 32245 chr13 115169878 + 109994881 109996453 MLT2A1 477 + 0 477 80452 94 324 0 75 9 6 30 18 5 68 1 0 106 4 0 35 753 3 55 chain 13650 chr13 115169878 + 109998891 109999070 L1PB1 5432 + 4877 5054 145778 80 0 1 4 3 0 92 chain 2545 chr13 115169878 + 109999082 109999113 L1PB1 5432 + 5067 5098 232548 31 chain 16908 chr13 115169878 + 109999201 109999542 L1PB1 5432 + 5114 5423 135827 20 1 0 11 1 0 12 17 11 52 2 1 15 1 0 39 6 5 16 2 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 10 1 0 9 chain 4888 chr13 115169878 + 110003760 110003839 MADE1 96 - 1 96 196388 30 10 26 39 chain 23236 chr13 115169878 + 110031729 110032096 L1PA8 5853 + 5529 5852 114514 35 1 0 45 2 0 67 4 3 21 1 0 40 2 1 19 1 0 61 42 5 26 chain 21611 chr13 115169878 + 110034734 110034997 AluSc 308 + 10 273 121728 263 chain 25015 chr13 115169878 + 110048918 110049231 AluY 311 + 0 306 104707 24 4 0 99 7 4 179 chain 26847 chr13 115169878 + 110051088 110051403 L1PA7 6471 + 6106 6435 96815 203 0 14 112 chain 26533 chr13 115169878 + 110086984 110087290 L1PA7 6471 - 2 308 97917 306 chain 51576 chr13 115169878 + 110087290 110087921 L1PA7 6471 + 5536 6169 57904 88 2 0 62 1 2 135 5 8 338 chain 383736 chr13 115169878 + 110093839 110098295 L1PA5 6144 - 4 4489 10648 6 6 0 659 0 4 96 1 0 61 0 1 865 0 3 268 0 1 140 0 3 450 0 1 326 0 5 5 0 1 69 1 0 155 0 11 577 0 4 113 1 2 19 0 1 180 5 6 453 chain 42601 chr13 115169878 + 110110566 110111073 L1PA8A 6298 - 285 795 65897 43 0 3 464 chain 19156 chr13 115169878 + 110111073 110111347 L1PA8A 6298 + 6009 6291 129663 62 5 13 99 22 22 86 chain 522136 chr13 115169878 + 110154658 110160789 L1PA6 6164 - 2 6164 4944 6 2 0 509 2 1 358 1 0 609 0 34 280 0 1 430 0 1 684 2 1 52 1 2 133 1 0 209 1 0 316 0 1 208 1 3 730 1 0 696 0 1 725 9 7 165 chain 48174 chr13 115169878 + 110213267 110213848 L1PA7 6471 - 26 614 60340 136 1 2 216 0 5 159 0 1 69 chain 15253 chr13 115169878 + 110216098 110216314 MER30 238 + 1 236 140622 64 0 1 41 8 0 7 3 26 21 0 3 72 chain 13481 chr13 115169878 + 110223100 110223374 L1PB1 5432 - 12 264 146410 16 1 0 13 2 1 20 1 0 24 2 0 5 18 15 18 18 8 4 1 0 16 1 0 44 1 0 10 7 6 52 chain 40356 chr13 115169878 + 110226332 110226869 MLT2A2 560 - 9 560 68798 60 0 1 67 27 39 323 0 1 60 chain 16064 chr13 115169878 + 110230089 110230455 THE1D 372 + 0 372 138167 101 2 1 21 9 5 32 97 88 63 19 39 22 chain 22460 chr13 115169878 + 110246378 110246656 L1PA6 6164 + 5875 6156 118200 28 0 3 250 chain 21981 chr13 115169878 + 110267935 110268242 L1PA8 5853 - 0 300 120311 5 0 1 87 1 0 19 2 1 48 1 0 10 1 0 74 2 0 25 1 0 19 1 0 11 chain 22420 chr13 115169878 + 110271352 110271715 THE1B 368 - 0 368 118377 60 1 0 59 8 7 12 1 0 17 0 4 9 9 10 21 1 0 93 0 1 4 8 7 11 0 6 34 2 0 13 chain 46608 chr13 115169878 + 110295883 110296440 L1PA7 6471 - 10 567 61527 557 chain 13717 chr13 115169878 + 110312872 110313148 L1PB1 5432 + 5167 5420 145549 53 24 22 35 6 5 14 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 78851 chr13 115169878 + 110316186 110317055 L1PA4 6152 + 5270 6140 44125 743 0 1 126 chain 26151 chr13 115169878 + 110354304 110354656 THE1B 368 - 0 368 99398 144 4 8 21 8 6 20 1 0 110 0 15 44 chain 108241 chr13 115169878 + 110384119 110385565 LTR12C 1709 - 0 1708 34635 84 8 7 21 1 33 55 1 0 280 45 14 42 0 1 39 0 248 48 1 0 352 0 1 23 5 0 162 0 19 237 4 0 4 0 4 34 chain 28988 chr13 115169878 + 110425035 110425341 AluYb8 318 - 12 318 89046 306 chain 509192 chr13 115169878 + 110475428 110481853 L1PA6 6164 - 8 6164 6229 151 11 12 2717 0 1 72 6 7 380 44 68 5 0 2 182 0 1 693 326 0 907 1 26 422 2 1 39 0 2 266 0 1 201 chain 85873 chr13 115169878 + 110484366 110485453 L1PA8A 6298 + 5196 6291 41205 182 5 0 111 1 6 405 1 6 186 0 1 42 1 3 44 10 10 99 chain 21790 chr13 115169878 + 110502150 110502396 L1PA5 6144 - 0 246 121062 246 chain 19460 chr13 115169878 + 110502907 110503307 THE1B 368 - 0 368 128787 55 5 6 67 127 90 97 0 6 32 2 0 15 chain 30089 chr13 115169878 + 110507008 110507518 L1PB1 5432 + 4914 5391 84532 86 1 0 102 14 12 24 1 0 8 1 0 10 6 2 9 2 0 53 2 1 15 1 0 44 1 0 12 18 5 22 20 17 10 2 0 24 1 0 21 chain 54711 chr13 115169878 + 110539813 110540890 L1PA15 4387 + 2777 3544 55890 116 57 59 49 317 5 160 4 3 354 0 1 20 chain 32669 chr13 115169878 + 110543383 110544502 MLT2A1 477 - 0 477 79736 12 4 0 40 685 43 202 8 12 168 chain 6925 chr13 115169878 + 110547630 110547733 Tigger3b 1229 - 535 644 177999 9 1 0 5 0 1 17 0 6 21 0 1 44 1 0 5 chain 7020 chr13 115169878 + 110574219 110574309 MADE1 96 - 0 96 177323 46 0 6 44 chain 14291 chr13 115169878 + 110583444 110583612 AluSx1 309 + 126 294 143588 168 chain 45098 chr13 115169878 + 110587629 110588361 L1PA14 3548 - 74 766 62939 9 1 0 10 6 0 16 5 0 25 1 0 18 1 0 9 1 0 9 4 2 31 18 13 111 1 0 84 1 0 6 2 0 13 5 3 5 2 0 73 1 0 32 8 4 48 2 0 11 7 4 156 chain 288292 chr13 115169878 + 110600619 110604344 HERVL-int 5654 + 1692 5644 14140 45 0 4 39 12 14 924 11 10 275 0 330 747 1 2 297 0 1 292 0 1 216 74 0 114 0 3 6 4 0 25 0 8 171 0 2 7 60 4 12 0 10 154 1 0 29 0 1 209 chain 31366 chr13 115169878 + 110604354 110604901 MLT2A1 477 + 0 477 81880 141 4 5 23 1 5 11 0 1 109 7 8 20 1 0 61 114 38 55 chain 23494 chr13 115169878 + 110617083 110617396 THE1B 368 + 0 325 113153 44 0 15 106 8 7 23 1 0 99 1 0 31 chain 35277 chr13 115169878 + 110644059 110644464 L1PA5 6144 + 5738 6142 75823 147 1 0 257 chain 23772 chr13 115169878 + 110645600 110645972 THE1C 375 + 0 364 111644 109 14 11 80 36 31 47 0 1 71 1 0 14 chain 185737 chr13 115169878 + 110647763 110650337 Charlie3 2679 + 18 2674 20439 15 1 0 22 24 64 28 1 2 17 5 17 11 12 0 78 4 0 137 7 17 29 5 8 385 1 2 128 9 5 235 7 20 30 7 6 161 14 21 64 0 5 74 10 20 742 0 1 56 13 14 83 0 1 87 2 0 6 11 12 53 chain 7542 chr13 115169878 + 110680473 110680626 Tigger5 388 + 205 355 173922 30 1 0 26 41 39 55 chain 23281 chr13 115169878 + 110691875 110692140 L1PA5 6144 - 2418 2683 112880 265 chain 212798 chr13 115169878 + 110692140 110694515 L1PA5 6144 + 3764 6142 18306 154 2 1 1436 0 4 783 chain 320928 chr13 115169878 + 110701140 110705102 L1PA5 6144 + 2495 6134 12563 656 8 7 351 1 0 424 0 1 727 1 0 99 10 0 267 310 0 864 1 0 243 chain 29984 chr13 115169878 + 110705102 110705480 L1PA7 6471 + 6086 6465 84860 17 0 6 204 5 6 88 1 0 51 5 0 7 chain 257102 chr13 115169878 + 110727473 110730534 L1PA7 6471 - 15 3097 15872 132 0 1 191 0 1 386 1 0 128 0 3 273 1 0 60 1 0 602 0 8 54 0 1 111 0 8 748 0 1 60 15 16 298 chain 130053 chr13 115169878 + 110730675 110732338 L1P2 5180 + 1080 2843 28078 9 5 0 6 0 111 173 0 1 444 1 0 6 0 1 68 1 0 137 6 5 166 0 4 108 13 0 71 0 4 449 chain 11940 chr13 115169878 + 110739452 110739635 L1MA4 2864 + 2499 2693 152443 129 32 43 22 chain 24859 chr13 115169878 + 110740076 110740355 L1PA4 6152 - 1 281 105575 161 0 1 118 chain 16877 chr13 115169878 + 110750229 110750480 7SLRNA 320 - 53 302 135898 140 27 28 33 3 0 48 chain 37732 chr13 115169878 + 110763859 110764295 L1P1 4361 - 20 452 72512 12 2 1 23 1 0 155 1 0 49 1 0 192 chain 54268 chr13 115169878 + 110764295 110764890 L1PA3long 6157 + 5562 6157 56183 595 chain 3672 chr13 115169878 + 110786642 110786686 U2 167 - 114 158 212336 44 chain 19451 chr13 115169878 + 110797498 110797755 AluY 311 + 57 311 128815 69 1 2 109 8 4 70 chain 28894 chr13 115169878 + 110812507 110812813 AluYb8 318 + 0 305 89481 206 1 0 99 chain 24907 chr13 115169878 + 110841399 110841700 AluSp 311 - 6 302 105298 11 5 0 285 chain 3590 chr13 115169878 + 110912988 110913107 L1MB3 1562 + 1433 1549 213818 5 2 0 30 1 0 10 48 48 23 chain 3385 chr13 115169878 + 110974345 110974388 L1MB3 1562 - 264 307 217363 43 chain 7887 chr13 115169878 + 111104107 111104200 MER30 238 + 145 238 171754 93 chain 22616 chr13 115169878 + 111105575 111105871 AluSp 311 + 10 300 117504 34 2 1 239 3 0 7 2 0 9 chain 3047 chr13 115169878 + 111136042 111136074 U2 167 - 135 167 224057 32 chain 30025 chr13 115169878 + 111138948 111139345 LTR7 482 - 5 482 84728 153 0 10 19 0 31 39 0 1 109 8 46 69 chain 11648 chr13 115169878 + 111146939 111147064 AluYc 301 + 160 285 153705 125 chain 25923 chr13 115169878 + 111151538 111151905 THE1C 375 - 0 375 100327 157 0 1 22 20 18 25 6 10 103 0 5 34 chain 17793 chr13 115169878 + 111189130 111189333 L1PA5 6144 - 1 205 133437 28 0 1 175 chain 4094 chr13 115169878 + 111194423 111194467 L1PA3long 6157 - 0 44 206030 44 chain 6122 chr13 115169878 + 111195189 111195461 L1MA9 1812 - 207 458 184248 26 65 63 23 97 78 27 1 0 29 0 1 4 chain 27017 chr13 115169878 + 111197157 111197499 THE1A 353 + 0 339 96224 109 3 1 72 1 0 157 chain 4743 chr13 115169878 + 111209598 111209671 MLT1D-int 1367 + 360 438 197993 52 6 11 15 chain 20719 chr13 115169878 + 111214726 111214977 AluSq4 311 - 1 254 124893 69 0 1 113 0 1 69 chain 5190 chr13 115169878 + 111221220 111221284 MLT1B 390 + 278 342 193144 64 chain 6721 chr13 115169878 + 111235906 111235990 MSTB 430 + 0 89 179525 17 0 5 67 chain 30376 chr13 115169878 + 111239738 111240054 AluYb8 318 + 0 316 83719 316 chain 16021 chr13 115169878 + 111250987 111251192 MER30 238 + 0 238 138303 105 0 33 100 chain 32487 chr13 115169878 + 111254583 111255346 MER4A1 472 + 0 472 80050 15 0 2 7 14 14 137 315 0 51 1 22 70 0 1 153 chain 23984 chr13 115169878 + 111254770 111255062 AluSp 311 + 0 289 110420 4 1 0 121 2 0 164 chain 94986 chr13 115169878 + 111256097 111257681 HSMAR1 1287 - 1 1287 38102 359 12 11 145 0 1 71 0 3 21 18 21 249 0 4 187 322 5 55 1 0 29 0 5 58 0 5 57 chain 149609 chr13 115169878 + 111258022 111259669 SVA_D 2077 - 16 2060 24671 624 0 49 195 0 310 118 0 40 697 1 0 6 1 0 5 chain 4607 chr13 115169878 + 111262479 111262584 MER4D0 881 + 39 130 199543 21 1 0 10 17 5 31 6 5 19 chain 28481 chr13 115169878 + 111263380 111263836 MER41G 495 + 7 466 91259 120 5 6 21 51 48 12 1 2 76 4 8 166 chain 28519 chr13 115169878 + 111265874 111266249 LTR12F 595 + 7 458 91105 96 0 1 39 3 1 26 0 90 124 2 1 6 12 0 67 chain 138178 chr13 115169878 + 111284353 111285941 LTR12C 1709 - 0 1709 26460 162 0 2 317 0 4 107 2 0 6 1 0 252 0 118 741 chain 533037 chr13 115169878 + 111321942 111328064 L1PA5 6144 + 1 6144 3844 134 10 24 242 0 1 224 0 2 124 12 13 130 0 1 112 2 1 160 9 0 2450 0 4 293 1 0 428 0 4 300 9 3 200 0 1 17 0 1 85 1 0 9 0 8 499 1 2 521 0 1 149 chain 62903 chr13 115169878 + 111348124 111348857 L1PA7 6471 - 1 739 51486 11 2 0 161 1 0 68 1 0 117 0 9 372 chain 17063 chr13 115169878 + 111361903 111362144 MLT2A1 477 + 219 477 135422 162 37 54 42 chain 22166 chr13 115169878 + 111373624 111373907 AluSp 311 - 15 310 119513 18 7 20 168 1 0 89 chain 18418 chr13 115169878 + 111385302 111385657 THE1D 372 - 0 372 131720 148 94 102 14 22 31 77 chain 27889 chr13 115169878 + 111396876 111397245 THE1C 375 - 2 375 93400 24 1 0 87 0 2 74 1 0 33 7 11 142 chain 5188 chr13 115169878 + 111397871 111397956 MER101-int 1169 - 479 567 193168 54 11 14 20 chain 8271 chr13 115169878 + 111422084 111422290 L1PB1 5432 - 9 194 169561 19 1 0 12 1 0 22 1 0 24 2 0 9 60 45 12 4 3 39 chain 34330 chr13 115169878 + 111432017 111432482 MER75 514 - 0 470 77168 9 0 1 6 0 1 207 3 4 10 0 2 90 1 0 110 4 5 25 chain 5068 chr13 115169878 + 111433745 111433801 THE1D 372 - 316 372 194447 56 chain 28463 chr13 115169878 + 111435081 111435435 THE1B 368 - 0 368 91327 100 0 1 75 2 0 133 0 15 44 chain 26059 chr13 115169878 + 111435435 111435764 THE1D-int 1627 - 1268 1603 99799 152 0 2 128 0 4 49 chain 24444 chr13 115169878 + 111440654 111440954 AluY 311 + 3 291 107831 129 0 1 151 13 0 7 chain 128584 chr13 115169878 + 111473322 111474869 LTR12C 1709 + 0 1709 28424 104 5 4 645 0 161 161 0 2 34 1 0 5 3 1 78 10 9 20 1 5 480 chain 36926 chr13 115169878 + 111476727 111477217 MER75 514 + 20 514 73623 67 5 8 323 1 5 75 3 0 16 chain 26450 chr13 115169878 + 111509543 111509889 THE1B 368 + 0 357 98240 44 0 15 115 1 0 22 2 0 97 1 0 64 chain 21793 chr13 115169878 + 111559423 111559653 AluYa5 310 - 6 236 121048 230 chain 43808 chr13 115169878 + 111569708 111570264 MER41A 554 + 0 554 64440 35 7 8 118 0 1 355 11 7 30 chain 23031 chr13 115169878 + 111571803 111572105 AluSp 311 + 16 307 115487 104 11 0 187 chain 41164 chr13 115169878 + 111577515 111578046 MER41A 554 + 13 554 67692 455 8 13 42 6 11 20 chain 33736 chr13 115169878 + 111578627 111579065 MLT2A2 560 + 14 560 78034 166 1 0 121 3 112 147 chain 24427 chr13 115169878 + 111602043 111602379 THE1C 375 + 7 345 107931 118 3 0 47 1 2 55 1 3 21 0 3 6 1 0 83 chain 37397 chr13 115169878 + 111609734 111610184 LTR7C 471 - 22 471 72957 171 5 4 274 chain 39278 chr13 115169878 + 111610513 111611039 MER41A 554 + 0 533 70356 86 9 10 53 0 1 314 15 20 49 chain 18210 chr13 115169878 + 111611756 111611973 AluY 311 + 100 311 132311 26 6 0 185 chain 39525 chr13 115169878 + 111617606 111618189 LTR10F 562 + 0 562 69989 134 44 10 29 17 0 44 0 14 17 1 17 297 chain 129345 chr13 115169878 + 111620416 111622905 HERVIP10F-int 4088 + 218 2643 28232 13 27 18 5 1 0 12 3 0 7 3 1 13 1 0 19 1 0 8 171 114 7 1 0 10 1 0 10 4 3 16 90 78 16 1 0 12 1 2 19 1 0 8 1 0 4 7 5 10 1 0 13 1 0 17 1 0 15 1 0 7 1 0 23 35 32 26 1 0 4 4 2 5 0 2 26 1 0 7 1 0 59 1 0 5 1 0 26 1 0 11 1 0 20 1 0 8 1 0 5 12 10 20 1 0 5 4 1 8 1 0 29 1 0 41 2 0 11 1 0 8 1 0 13 21 16 20 11 8 23 1 0 14 1 0 41 1 0 100 37 100 23 1 0 30 8 7 56 7 5 81 1 0 26 31 27 233 1 20 148 6 5 15 1 0 35 1 4 26 1 0 82 2 1 74 7 6 10 2 1 134 1 0 185 chain 298965 chr13 115169878 + 111646593 111650625 L1PA10 4194 + 179 4161 13479 9 8 0 11 3 0 6 26 18 9 2 0 10 4 3 5 1 0 22 2 0 14 1 0 7 37 13 8 1 0 21 8 6 10 27 20 6 2 0 6 0 1 6 6 0 5 0 1 7 1 0 85 3 0 148 0 1 445 14 0 20 0 17 134 0 1 218 1 2 289 1 0 122 0 5 243 16 17 172 1 12 295 0 1 119 0 1 896 0 2 434 2 0 24 0 1 4 1 0 5 4 1 33 1 0 11 chain 15723 chr13 115169878 + 111661756 111661968 HSMAR2 1300 - 1085 1299 139204 153 10 13 4 1 0 44 chain 135740 chr13 115169878 + 111670853 111672338 L1PA2 6032 - 0 1487 26890 815 0 2 670 chain 21462 chr13 115169878 + 111700234 111700494 AluSp 311 + 37 294 122286 95 3 0 162 chain 312748 chr13 115169878 + 111705486 111710559 L1PB1 5432 - 33 4352 12900 7 1 0 7 2 1 14 1 0 24 2 0 14 1 0 5 3 1 9 24 14 7 2 0 16 2 1 42 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 1 0 9 1 0 21 3 0 9 1 2 265 1 5 27 4 1 179 2 0 52 0 1 27 0 1 675 0 3 131 0 7 110 8 9 25 21 0 10 12 41 355 5 8 584 0 5 88 1 2 169 764 0 49 3 0 5 1 4 61 1 4 353 0 4 15 0 3 6 7 4 133 0 4 178 0 1 80 32 32 34 18 20 253 chain 61927 chr13 115169878 + 111708570 111709330 LTR17 781 + 0 781 51930 125 2 1 139 0 1 61 2 1 382 6 28 43 chain 36470 chr13 115169878 + 111711738 111712184 LTR10F 562 - 0 562 74276 157 0 1 150 0 115 139 chain 46391 chr13 115169878 + 111716443 111717046 MER4B 649 + 0 623 61694 58 4 0 135 0 23 381 0 1 25 chain 76785 chr13 115169878 + 111723508 111724529 MER11A 1151 - 0 1151 45087 119 1 0 44 6 7 44 1 2 14 0 1 58 8 41 12 0 1 123 0 1 115 0 1 24 0 7 9 13 7 77 0 1 149 4 0 62 0 3 51 8 0 24 0 99 55 chain 117884 chr13 115169878 + 111735384 111736783 LTR12C 1709 - 0 1709 31837 63 0 4 191 17 0 223 0 4 113 2 320 477 1 0 4 0 1 229 1 2 78 chain 23190 chr13 115169878 + 111741203 111741467 L1PA4 6152 + 5877 6141 114724 264 chain 9248 chr13 115169878 + 111760820 111760942 L1MA4 2864 + 2235 2354 164317 98 4 1 20 chain 218771 chr13 115169878 + 111786165 111788603 L1PA5 6144 - 13 2461 17959 16 0 1 188 1 11 957 11 5 541 0 5 724 chain 88969 chr13 115169878 + 111788603 111789594 L1PA5 6144 + 2642 3634 39914 961 0 1 30 chain 29037 chr13 115169878 + 111800037 111800343 AluYa5 310 - 4 310 88823 306 chain 59528 chr13 115169878 + 111841560 111842288 LTR12 884 - 2 884 53089 137 1 2 179 1 0 187 0 113 13 1 42 209 chain 461660 chr13 115169878 + 111844881 111850656 HERV9-int 5642 - 0 5642 8346 17 2 0 3 4 0 19 28 5 13 1 0 60 1 0 27 3 1 37 5 3 92 1 0 4 8 9 119 4 3 416 24 11 858 8 6 557 0 2 886 4 8 528 0 1 227 0 8 298 0 8 23 0 1 285 1 0 80 138 0 70 2 1 10 0 1 85 1 0 63 2 1 273 0 6 7 6 31 313 0 4 162 chain 65881 chr13 115169878 + 111850677 111851459 LTR12 884 - 0 884 50150 128 10 0 369 0 112 275 chain 24761 chr13 115169878 + 111874226 111874547 MLT2A1 477 - 151 477 106107 152 1 5 26 5 6 137 chain 2916 chr13 115169878 + 111900748 111900807 L1MEf 1413 - 703 761 226759 22 16 15 21 chain 19500 chr13 115169878 + 111969113 111969443 THE1D 372 - 13 363 128658 19 1 0 116 4 6 10 23 39 6 0 1 12 8 6 12 0 4 46 10 0 6 1 11 56 chain 29812 chr13 115169878 + 112010915 112011260 L1PA3long 6157 + 5813 6157 85401 324 1 0 20 chain 6252 chr13 115169878 + 112019975 112020048 L1PA3long 6157 + 6084 6157 183158 73 chain 21543 chr13 115169878 + 112047611 112047969 THE1B 368 + 0 368 121992 47 22 23 88 3 0 14 2 1 26 38 51 118 chain 37915 chr13 115169878 + 112117342 112117936 L1PA16 3655 - 123 697 72261 49 7 10 61 1 0 96 29 27 85 1 0 88 0 1 11 30 15 87 5 0 44 chain 545058 chr13 115169878 + 112148473 112154612 L1PA5 6144 - 16 6144 2067 138 0 1 342 0 1 345 0 4 1119 6 0 123 14 0 380 1 0 130 1 2 853 0 3 2687 chain 65607 chr13 115169878 + 112245699 112246465 L1PA6 6164 - 2 770 50291 50 0 1 452 0 1 264 chain 92800 chr13 115169878 + 112257456 112258528 L1PA5 6144 - 12 1076 38710 176 1 2 278 13 0 375 0 4 229 chain 37264 chr13 115169878 + 112533231 112533658 L1PA5 6144 - 4 431 73150 427 chain 11772 chr13 115169878 + 112533658 112533793 L1PA5 6144 + 5568 5703 153167 135 chain 378406 chr13 115169878 + 112585592 112590625 L1PB1 5432 - 12 5417 10805 15 2 0 4 0 1 9 1 0 21 1 0 24 2 0 10 5 4 5 2 0 19 16 6 6 3 0 16 1 0 44 6 5 10 2 1 51 2 0 10 2 0 3 2 0 10 1 0 12 6 5 10 6 3 11 71 501 48 0 1 832 1 3 397 1 0 122 13 0 359 1 0 54 1 6 241 0 1 40 4 0 255 1 0 449 0 1 49 1 0 164 1 3 175 12 0 7 2 0 580 4 5 121 6 9 67 0 4 22 0 1 40 7 4 26 0 1 104 14 7 391 chain 21581 chr13 115169878 + 112619273 112619887 L1PA8 5853 - 0 289 121844 88 325 5 19 2 1 49 1 0 11 1 0 72 2 0 44 chain 26126 chr13 115169878 + 112643940 112644280 THE1D 372 + 0 364 99502 60 0 15 44 0 6 56 9 12 171 chain 16987 chr13 115169878 + 112678040 112678336 THE1B 368 - 62 368 135627 64 61 67 40 0 3 15 10 11 106 chain 35909 chr13 115169878 + 112739830 112740317 MER1A 529 - 0 492 75004 58 5 7 6 4 0 80 1 0 282 10 18 41 chain 27109 chr13 115169878 + 112740474 112740760 AluYa5 310 + 12 298 95908 286 chain 4742 chr13 115169878 + 112837876 112837954 MLT1B 390 - 18 111 197995 35 10 25 33 chain 6053 chr13 115169878 + 112840994 112841104 MLT1A1 405 + 283 394 184791 41 25 26 44 chain 118995 chr13 115169878 + 112875848 112877237 LTR12C 1709 + 0 1709 31414 78 1 2 712 1 319 6 2 0 107 0 4 43 1 0 438 chain 4062 chr13 115169878 + 112893571 112893730 LTR12C 1709 + 1118 1195 206464 41 99 17 19 chain 4438 chr13 115169878 + 112893758 112893857 LTR12C 1709 + 660 718 201479 17 41 0 41 chain 12311 chr13 115169878 + 112920214 112920412 L1P3 4156 + 3946 4138 150969 104 4 1 44 21 18 25 chain 16174 chr13 115169878 + 112988919 112989128 MER30 238 - 0 238 137830 39 1 4 57 0 26 112 chain 105138 chr13 115169878 + 113057753 113059241 L1PB1 5432 - 5 1464 35466 5 2 0 18 1 0 13 1 0 21 1 0 22 12 10 6 1 0 5 2 0 18 29 17 12 1 0 44 1 0 15 2 1 52 2 0 9 5 1 14 1 0 10 5 4 17 3 0 8 1 2 477 2 0 16 1 7 143 0 4 71 1 0 182 1 0 235 chain 314254 chr13 115169878 + 113061139 113064678 L1PA5 6144 + 2588 6132 12838 1041 1 0 244 0 1 596 1 6 1656 chain 6975 chr13 115169878 + 113188143 113188271 L1PB1 5432 - 5 124 177636 4 1 0 19 1 0 7 7 6 21 1 0 24 2 0 14 1 0 5 2 0 19 chain 73462 chr13 115169878 + 113202800 113203627 L1PA5 6144 + 5134 5962 46806 285 0 1 542 chain 14637 chr13 115169878 + 113203633 113203805 L1PA5 6144 + 5969 6141 142464 172 chain 16289 chr13 115169878 + 113226605 113226844 L1PA8A 6298 - 7 220 137508 24 28 0 166 5 7 16 chain 35527 chr13 115169878 + 113232293 113233191 LTR14B 630 + 0 630 75509 21 0 2 26 0 1 71 0 2 87 1 18 7 0 1 53 0 7 11 338 17 23 50 71 97 1 0 25 11 14 76 chain 29649 chr13 115169878 + 113232591 113232900 AluYk12 309 + 0 309 86070 309 chain 20540 chr13 115169878 + 113266718 113266988 AluSp 311 + 35 302 125507 71 0 1 58 13 9 128 chain 99565 chr13 115169878 + 113332228 113333362 SVA_B 1603 - 1 1602 36890 571 2 246 114 0 192 210 0 1 66 0 1 32 0 1 104 1 25 14 0 4 20 chain 71357 chr13 115169878 + 113361757 113362704 HSMAR1 1287 + 330 1287 47768 135 21 22 209 0 3 71 0 1 51 1 0 137 5 6 64 0 3 23 1 2 71 0 1 158 chain 53937 chr13 115169878 + 113363457 113364194 MER4E 760 + 2 759 56411 22 9 6 121 22 25 186 2 4 80 1 0 7 3 4 75 1 0 58 0 5 36 2 3 46 1 14 65 chain 20043 chr13 115169878 + 113374867 113375112 AluSc 308 - 8 251 126998 14 2 0 229 chain 14136 chr13 115169878 + 113420530 113420714 MER107 203 - 7 199 144087 25 1 7 75 0 2 83 chain 5984 chr13 115169878 + 113436027 113436098 MER41A 554 + 398 469 185399 71 chain 18667 chr13 115169878 + 113559402 113559640 LTR10B1 532 - 0 237 131037 226 1 0 11 chain 28437 chr13 115169878 + 113573519 113573818 AluYa5 310 - 11 310 91435 299 chain 3124 chr13 115169878 + 113589325 113589382 MLT1C 463 + 7 63 222466 17 10 9 30 chain 5465 chr13 115169878 + 113589417 113589574 MER47A 366 + 0 159 190364 7 0 1 4 29 0 3 1 0 14 35 66 64 chain 3285 chr13 115169878 + 113592175 113592236 MER101 471 - 210 295 219271 28 9 33 24 chain 77536 chr13 115169878 + 113595946 113596925 LTR13 1007 + 0 1007 44719 73 2 0 55 0 3 250 4 5 63 1 0 40 0 7 73 0 12 113 1 9 112 0 1 145 0 2 6 2 0 6 2 1 31 chain 25839 chr13 115169878 + 113702749 113703054 AluYk4 311 - 7 310 100710 95 1 0 111 3 2 95 chain 29663 chr13 115169878 + 113790953 113791263 AluYa5 310 - 0 310 86013 310 chain 4298 chr13 115169878 + 113903449 113903512 L1MB5 1630 - 225 289 203243 11 1 2 51 chain 14640 chr13 115169878 + 113911660 113911961 MSTB 430 - 0 337 142456 149 103 138 20 0 1 29 chain 46737 chr13 115169878 + 113942500 113943013 MER9a1 513 - 0 513 61425 513 chain 20450 chr13 115169878 + 113996576 113996831 AluY 311 + 38 294 125756 95 9 7 91 5 8 55 chain 26235 chr13 115169878 + 114026438 114026726 AluYa5 310 - 21 310 99077 162 0 1 126 chain 7480 chr13 115169878 + 114031329 114031812 MER4D1 891 + 414 587 174275 16 47 48 69 310 1 21 2 0 18 chain 24504 chr13 115169878 + 114034980 114035765 MER41A 554 + 1 427 107526 52 0 3 30 9 10 56 0 14 26 384 29 11 28 6 84 1 3 57 4 0 15 1 3 27 chain 348108 chr13 115169878 + 114036082 114041780 L1PB1 5432 - 155 4620 11661 6 4 0 35 1 0 15 2 1 51 2 0 10 5 1 11 313 0 9 1 0 24 1 0 11 3 0 35 2 0 17 0 1 421 4 0 49 0 7 63 317 0 29 22 27 492 0 1 224 6 1 186 0 1 124 1 10 245 314 0 290 0 4 34 2 0 293 1 5 25 0 5 14 3 0 241 295 0 323 7 2 315 0 1 58 0 1 150 2 0 10 0 3 163 3 4 47 1 0 37 0 1 4 1 0 139 0 3 89 5 6 91 chain 4403 chr13 115169878 + 114042219 114042266 MER41-int 2638 + 113 160 201899 47 chain 67660 chr13 115169878 + 114044176 114045071 MER41-int 2638 + 1738 2638 49383 140 2 0 33 2 0 15 0 4 113 24 25 157 9 11 128 0 2 272 chain 40108 chr13 115169878 + 114045088 114045613 MER41A 554 + 10 543 69167 76 9 10 92 1 2 135 0 1 71 1 3 7 0 1 22 0 1 24 0 1 87 chain 40843 chr13 115169878 + 114051913 114052447 LTR71B 605 - 61 589 68110 394 2 4 6 2 0 6 6 0 118 chain 24623 chr13 115169878 + 114063917 114064223 AluY 311 + 0 302 106865 35 4 2 84 7 5 176 chain 20637 chr13 115169878 + 114079725 114079986 AluSq10 312 - 21 312 125166 7 2 0 69 1 33 182 chain 86477 chr13 115169878 + 114104680 114105696 LTR13 1007 - 0 1007 40978 82 0 1 284 14 0 174 0 2 34 10 5 355 0 7 63 chain 4327 chr13 115169878 + 114212008 114212060 MER54B 801 + 224 277 202870 31 0 1 21 chain 23348 chr13 115169878 + 114213857 114214145 AluSc8 310 + 8 300 113932 124 0 3 20 0 1 144 chain 23867 chr13 115169878 + 114246487 114246771 AluSp 311 - 29 311 111098 150 2 0 132 chain 7932 chr13 115169878 + 114257190 114257333 MER30 238 - 0 184 171433 63 0 2 7 6 0 8 5 14 22 7 43 25 chain 82192 chr13 115169878 + 114275681 114276664 LTR13 1007 + 0 1007 42681 263 0 2 116 4 5 40 0 20 343 19 20 198 chain 127479 chr13 115169878 + 114482862 114484611 PABL_A-int 1935 - 65 1836 28698 16 2 0 7 0 3 8 1 0 104 6 5 24 0 1 72 0 18 91 0 1 199 1 0 51 1 6 25 7 9 242 1 0 102 0 1 7 0 1 18 1 0 447 8 10 47 0 8 9 9 0 10 0 1 31 1 0 43 0 1 92 1 0 21 8 6 25 2 0 9 chain 10519 chr13 115169878 + 114555087 114555261 MER30 238 + 34 231 158168 59 21 40 18 1 7 9 2 0 64 chain 61893 chr13 115169878 + 114570029 114570692 SVA_D 2077 + 1414 2077 51950 663 chain 24209 chr13 115169878 + 114570892 114571249 THE1B 368 + 0 368 109160 41 1 16 115 10 9 17 2 0 6 3 0 5 5 8 77 1 0 74 chain 5078 chr13 115169878 + 114583038 114583102 Tigger7 736 - 395 459 194322 64 chain 20886 chr13 115169878 + 114607068 114607370 THE1B 368 + 0 306 124334 169 1 0 19 12 15 9 1 5 13 1 0 12 1 0 64 chain 41393 chr13 115169878 + 114628790 114629303 MER9a3 513 + 0 513 67422 274 2 1 28 7 10 98 0 1 4 0 1 29 4 0 67 chain 28102 chr13 115169878 + 114768946 114769517 LTR10E 629 + 0 609 92644 18 1 0 139 70 67 45 19 68 36 9 8 74 57 56 23 1 0 34 2 0 34 2 0 7 chain 11187 chr13 115169878 + 114859713 114859894 L1MB5 1630 + 1084 1264 155482 67 25 26 29 2 0 58 chain 31108 chr13 115169878 + 114923090 114923452 L1PA4 6152 + 5778 6152 82328 34 1 0 166 0 1 17 1 7 35 0 1 102 0 5 6 chain 63889 chr13 115169878 + 114925654 114926440 L1PA10 4194 - 47 835 51058 31 3 0 460 0 4 144 5 6 143 chain 186688 chr13 115169878 + 114933314 114936286 MER57-int 2662 - 0 2622 20361 8 2 0 21 1 0 8 3 0 34 7 2 6 1 0 20 8 5 9 1 0 6 2 0 20 32 19 31 5 0 29 46 44 65 2 0 3 2 0 423 4 5 5 0 1 55 6 12 51 0 1 76 1 0 300 1 0 29 0 5 288 1 0 203 0 8 81 0 1 296 10 9 156 0 15 81 335 8 115 1 0 9 43 29 30 chain 10569 chr13 115169878 + 114938004 114938143 L1PA7 6471 + 6333 6469 157960 126 3 0 10 chain 27163 chr13 115169878 + 114938206 114938559 THE1A 353 + 0 353 95713 11 1 2 96 2 1 88 1 0 64 0 1 90 chain 88612 chr13 115169878 + 114947385 114948413 LTR5A 1029 - 0 1029 40140 253 9 11 613 6 5 147 chain 5145 chr13 115169878 + 114959161 114959270 MLT1A0 366 - 0 110 193602 32 34 35 43 chain 8410 chr13 115169878 + 114971997 114972112 L1MB8 1703 + 1453 1584 168787 27 0 3 62 0 13 26 chain 74688 chr13 115169878 + 114981772 114982613 L1PA5 6144 - 5 846 46165 841 chain 184228 chr13 115169878 + 114982613 114984654 L1PA5 6144 + 3240 5285 20567 246 0 4 1795 chain 22883 chr13 115169878 + 115058295 115058570 AluSg 306 + 28 304 116174 129 0 1 47 1 0 5 0 1 93 chain 21932 chr13 115169878 + 115060055 115060304 AluSc8 310 + 37 289 120492 96 0 3 153 chain 17368 chr13 115169878 + 115100916 115101222 L1PA14 3548 + 3145 3466 134602 20 4 6 20 1 30 111 1 0 10 5 1 36 4 2 12 7 5 19 1 0 39 5 0 3 1 0 7 chain 91680 chr14 107349540 + 19048872 19049917 L1PA3long 6157 - 805 1850 39062 1045 chain 73128 chr14 107349540 + 19049919 19050741 L1PA3long 6157 + 5334 6156 46960 822 chain 564740 chr14 107349540 + 19060295 19066341 L1HS 6032 - 0 6032 218 345 14 0 5687 chain 223449 chr14 107349540 + 19069321 19071790 L1PA3long 6157 - 15 2485 17689 139 0 1 2330 chain 18946 chr14 107349540 + 19079573 19079816 AluY 311 + 30 269 130237 95 5 1 143 chain 28593 chr14 107349540 + 19088900 19089212 AluYb8 318 - 8 318 90773 184 2 0 126 chain 87571 chr14 107349540 + 19095929 19096952 LTR5B 1012 + 0 1012 40544 34 0 1 115 14 0 510 1 3 349 chain 355347 chr14 107349540 + 19126226 19130208 L1PA3long 6157 + 2165 6157 11465 1127 0 1 1167 0 3 431 1 0 416 0 4 70 0 1 629 0 1 118 0 1 23 chain 154803 chr14 107349540 + 19131340 19133862 HERVIP10F-int 4088 + 520 2964 24000 17 1 0 31 1 0 33 13 10 17 1 0 10 3 2 12 1 0 21 1 0 7 1 0 27 3 1 8 2 1 38 15 12 33 8 6 60 1 0 5 1 0 26 1 0 11 1 0 20 1 0 8 1 0 5 19 10 21 1 0 4 4 1 8 1 0 29 1 0 41 2 0 11 1 0 21 1 0 5 15 11 24 8 5 22 1 0 14 1 0 17 7 6 18 1 0 99 1 0 38 4 0 13 1 0 4 12 5 21 27 24 20 1 0 28 1 0 60 35 32 25 3 0 27 11 10 28 34 30 330 11 10 52 1 0 20 1 0 65 2 1 82 1 0 77 2 1 12 2 1 135 1 0 4 0 1 36 0 1 8 1 0 86 1 2 151 0 11 205 chain 23569 chr14 107349540 + 19146834 19147205 L1PA8 5853 + 5489 5853 112746 75 5 4 39 3 1 72 1 0 14 12 11 34 3 2 11 10 9 92 chain 226749 chr14 107349540 + 19148022 19150655 L1PA5 6144 + 3504 6138 17498 710 1 0 444 1 0 487 0 1 226 0 1 148 0 2 209 3 2 404 chain 81686 chr14 107349540 + 19155962 19157007 MER11C 1089 - 26 1089 42895 319 6 7 45 0 4 133 8 9 160 1 0 71 0 4 55 0 9 247 chain 12961 chr14 107349540 + 19196932 19197087 L1PA4 6152 - 2 164 148388 148 0 7 7 chain 66844 chr14 107349540 + 19325143 19325939 L1PA7 6471 - 3 799 49710 796 chain 41380 chr14 107349540 + 19333726 19334222 MER9a2 513 - 19 513 67431 49 2 0 445 chain 9205 chr14 107349540 + 19334443 19334550 LTR5_Hs 974 - 865 974 164537 93 0 2 14 chain 4836 chr14 107349540 + 19341639 19341703 MER41B 635 - 97 156 196958 30 5 0 29 chain 364184 chr14 107349540 + 19343765 19348066 L1P1 4361 + 4 4328 11253 549 1 2 104 0 15 404 0 1 48 0 6 1049 0 1 1418 1 0 4 0 1 542 1 0 102 0 1 54 1 0 23 chain 31119 chr14 107349540 + 19382482 19382846 L1PA4 6152 - 9 378 82306 14 0 2 307 0 3 43 chain 44664 chr14 107349540 + 19382846 19383348 L1PA4 6152 + 5273 5775 63037 502 chain 214538 chr14 107349540 + 19383348 19385867 L1P1 4361 - 1083 3605 18192 1753 0 2 315 13 16 5 3 0 115 8 9 307 chain 22588 chr14 107349540 + 19385867 19386123 L1P1 4361 + 3292 3548 117642 256 chain 67661 chr14 107349540 + 19386123 19386915 L1P1 4361 + 3549 4341 49381 385 0 1 215 1 0 130 0 2 23 1 0 23 2 1 12 chain 22604 chr14 107349540 + 19391181 19391526 Tigger4b 360 + 21 360 117577 80 2 0 25 0 1 77 8 3 95 15 14 9 1 2 33 chain 57917 chr14 107349540 + 19397076 19397830 L1PA8A 6298 - 8 797 54025 99 21 22 56 1 4 108 1 0 83 0 1 30 0 25 195 2 0 111 1 9 46 chain 9495 chr14 107349540 + 19416463 19416578 L1PA7 6471 - 7 122 163100 115 chain 40813 chr14 107349540 + 19416578 19417095 L1PA7 6471 + 5815 6346 68156 157 0 1 28 0 2 90 0 2 28 0 1 181 0 8 33 chain 49696 chr14 107349540 + 19420898 19423325 L1PA6 6164 - 2 629 59240 148 10 11 34 0 2 177 1805 0 149 0 2 104 chain 31973 chr14 107349540 + 19423333 19423694 L1PA6 6164 + 5120 5481 80899 361 chain 56779 chr14 107349540 + 19425786 19426490 L1PA6 6164 - 2 707 54667 143 15 16 546 chain 26601 chr14 107349540 + 19466330 19466655 L1PA7 6471 + 6144 6470 97652 173 1 2 151 chain 22472 chr14 107349540 + 19477357 19477664 AluSc8 310 + 0 306 118146 9 2 1 119 13 16 116 1 2 36 4 0 7 chain 14106 chr14 107349540 + 19479603 19479756 L1PA4 6152 + 5996 6149 144190 153 chain 250988 chr14 107349540 + 19481925 19484758 L1PA4 6152 + 3322 6152 16180 1026 0 4 756 6 0 119 0 1 74 1 0 594 1 0 256 chain 20565 chr14 107349540 + 19513976 19514299 L1PB1 5432 - 274 598 125413 13 5 3 4 1 0 24 29 35 100 2 0 145 chain 80841 chr14 107349540 + 19590525 19591612 L1PA7 6471 - 2 1102 43251 10 3 0 59 9 4 83 3 5 83 0 9 103 19 25 156 0 1 263 0 1 46 1 3 249 chain 29131 chr14 107349540 + 19617905 19618497 L1MA1 4479 - 328 914 88403 13 1 0 20 0 1 10 3 1 28 5 4 62 0 1 59 3 0 6 1 0 29 95 91 41 4 21 9 1 0 16 2 0 20 10 5 129 9 4 16 chain 3729 chr14 107349540 + 19621024 19621063 HY3 101 + 61 100 211475 39 chain 4108 chr14 107349540 + 19635004 19635052 MER3 215 - 103 151 205795 48 chain 24335 chr14 107349540 + 19637467 19638023 LTR4 552 - 0 510 108444 88 1 0 13 61 76 47 78 4 5 0 3 114 9 8 13 1 0 21 0 3 44 39 49 22 chain 86244 chr14 107349540 + 19648361 19649346 L1P1 4361 + 2508 3493 41061 150 1 2 517 1 0 316 chain 20870 chr14 107349540 + 19657375 19657638 L1PA8A 6298 - 158 421 124393 263 chain 102780 chr14 107349540 + 19667278 19668480 L1PA5 6144 + 4921 6128 36056 172 1 0 182 0 4 530 3 4 157 6 7 151 chain 9813 chr14 107349540 + 19673714 19673835 MSTA-int 1630 + 0 121 161531 121 chain 11731 chr14 107349540 + 19680632 19680799 PABL_B 668 + 286 461 153343 62 2 1 25 9 15 48 0 3 21 chain 3911 chr14 107349540 + 19692852 19692901 MER41B 635 + 485 534 208697 49 chain 86199 chr14 107349540 + 19717121 19718131 LTR5B 1012 + 0 1012 41077 98 0 2 206 3 1 366 0 1 293 11 12 33 chain 27003 chr14 107349540 + 19760901 19761389 MER61F 604 + 0 534 96276 21 44 43 22 17 39 183 3 4 33 42 66 123 chain 42992 chr14 107349540 + 19776984 19777478 LTR15 485 + 1 485 65426 69 1 0 273 8 0 138 1 0 4 chain 258550 chr14 107349540 + 19796288 19799138 L1PA3long 6157 - 0 2853 15777 2195 0 2 271 1 2 383 chain 223543 chr14 107349540 + 19799138 19801656 L1PA3long 6157 + 768 3290 17682 308 1 2 342 1 2 112 1 3 1753 chain 44301 chr14 107349540 + 19801656 19802158 L1PA4 6152 - 377 879 63429 502 chain 31503 chr14 107349540 + 19802158 19802522 L1PA4 6152 + 5774 6143 81639 47 0 3 303 0 2 14 chain 5269 chr14 107349540 + 19846970 19847029 L1PA2 6032 + 5973 6032 192324 59 chain 78422 chr14 107349540 + 19857264 19858294 LTR5A 1029 - 0 1029 44307 33 8 9 166 1 2 43 6 5 446 2 0 96 5 0 59 7 20 22 15 1 47 0 6 74 chain 13727 chr14 107349540 + 19874318 19874520 Tigger4a 237 + 16 234 145520 9 0 15 17 1 2 117 7 0 12 0 7 39 chain 11731 chr14 107349540 + 19894585 19894752 PABL_B 668 - 207 382 153345 21 0 3 48 9 15 25 2 1 62 chain 9691 chr14 107349540 + 19901529 19901650 MSTA-int 1630 - 1509 1630 162140 121 chain 102918 chr14 107349540 + 19906883 19908085 L1PA5 6144 - 16 1223 36018 151 6 7 157 3 4 534 6 10 176 1 0 168 chain 20870 chr14 107349540 + 19917723 19917986 L1PA8A 6298 + 5877 6140 124392 263 chain 86492 chr14 107349540 + 19926019 19927002 L1P1 4361 - 868 1851 40971 322 1 0 511 1 2 148 chain 24503 chr14 107349540 + 19937364 19937921 LTR4 552 + 42 552 107528 22 30 43 6 4 0 44 0 3 21 1 0 13 9 8 114 0 3 5 78 4 47 61 76 13 1 0 88 chain 4108 chr14 107349540 + 19940339 19940387 MER3 215 + 64 112 205794 48 chain 8477 chr14 107349540 + 19952661 19953145 L1MB8 1703 + 1188 1625 168418 79 241 257 39 106 43 19 chain 3729 chr14 107349540 + 19954329 19954368 HY3 101 - 1 40 211482 39 chain 28412 chr14 107349540 + 19956895 19957491 L1MA1 4479 + 3565 4151 91527 16 13 4 129 10 5 20 2 0 16 1 0 9 2 0 5 10 29 28 95 91 30 1 0 5 3 0 59 0 1 62 5 4 28 3 1 10 0 1 20 1 0 13 chain 87379 chr14 107349540 + 19970430 19983113 L1PA7 6471 + 2283 6469 40622 109 0 2 43 0 1 5 1 0 195 1 2 42 5 6 22 11173 2659 249 1 3 48 0 1 261 0 1 156 8 14 114 0 9 83 3 5 90 5 0 56 3 0 10 chain 21032 chr14 107349540 + 20021329 20021567 L1PA4 6152 + 5907 6151 123802 31 0 3 50 0 3 157 chain 24716 chr14 107349540 + 20064531 20064823 AluSp 311 + 6 298 106349 292 chain 26169 chr14 107349540 + 20085579 20085860 AluYa5 310 - 1 281 99328 183 1 0 97 chain 254209 chr14 107349540 + 20088974 20091806 L1PA4 6152 - 0 2830 16020 256 1 0 595 1 0 1979 chain 14106 chr14 107349540 + 20093984 20094137 L1PA4 6152 - 3 156 144191 153 chain 56805 chr14 107349540 + 20133209 20133913 L1PA6 6164 + 5457 6162 54651 546 15 16 143 chain 32348 chr14 107349540 + 20135992 20136353 L1PA6 6164 - 683 1044 80275 361 chain 49848 chr14 107349540 + 20136364 20138808 L1PA6 6164 + 5538 6161 59121 250 1821 0 182 0 2 31 10 11 136 3 0 11 chain 9495 chr14 107349540 + 20143122 20143237 L1PA7 6471 + 6349 6464 163099 115 chain 58080 chr14 107349540 + 20161853 20162604 L1PA8A 6298 + 5504 6290 53937 43 1 9 113 2 0 193 0 25 30 1 2 87 2 1 103 0 3 70 7 8 99 chain 89600 chr14 107349540 + 20172751 20173799 L1P1 4361 - 20 1069 39781 12 2 1 23 1 0 24 0 2 129 1 0 215 0 1 385 0 1 256 chain 214922 chr14 107349540 + 20173799 20176318 L1P1 4361 + 756 3278 18171 307 8 9 115 3 0 5 13 16 315 1 3 1752 chain 44776 chr14 107349540 + 20176318 20176820 L1PA4 6152 - 377 879 62890 502 chain 31147 chr14 107349540 + 20176820 20177184 L1PA4 6152 + 5774 6143 82262 47 0 3 303 0 2 14 chain 155355 chr14 107349540 + 20188175 20189879 L1HS 6032 - 0 1698 23941 7 23 0 1390 0 17 284 chain 65259 chr14 107349540 + 20189879 20190580 L1HS 6032 + 3639 4340 50361 701 chain 28635 chr14 107349540 + 20205230 20205539 L1HS 6032 - 2 311 90579 309 chain 21585 chr14 107349540 + 20205539 20205775 L1HS 6032 + 5415 5651 121826 236 chain 16176 chr14 107349540 + 20243381 20243644 MER72 723 + 453 723 137825 74 2 0 5 0 2 20 33 39 70 0 2 16 1 0 42 chain 24114 chr14 107349540 + 20254091 20254392 AluY 311 + 0 300 109670 40 1 0 260 chain 25931 chr14 107349540 + 20270316 20270828 L1PA15 4387 - 21 507 100297 11 1 0 26 5 0 14 3 1 11 1 3 5 2 0 20 25 22 30 44 38 52 8 7 22 1 0 88 3 0 83 1 0 26 1 0 17 2 0 10 chain 457183 chr14 107349540 + 20282859 20288391 L1PA7 6471 - 28 5555 8508 740 1 0 82 1 0 117 26 0 6 0 1 198 0 1 48 1 0 447 0 1 124 0 4 417 0 3 49 1 0 4 0 1 40 3 4 532 0 1 50 0 3 398 0 1 267 0 6 400 19 20 156 0 1 60 19 18 179 4 1 502 0 1 164 0 3 477 chain 86849 chr14 107349540 + 20288394 20289523 L1P3 4156 - 640 4125 40835 225 0 2364 607 1 0 71 1 0 35 0 1 143 11 4 35 chain 15201 chr14 107349540 + 20306312 20306560 L1PA13 3608 + 3250 3488 140774 24 2 0 60 1 0 54 1 0 6 1 0 4 3 2 21 1 2 17 12 8 18 1 0 22 chain 64600 chr14 107349540 + 20321785 20322695 L1PA13 3608 - 122 1008 50746 20 1 0 16 10 6 42 10 8 7 1 0 52 1 0 62 2 0 113 1 0 32 36 24 504 chain 24315 chr14 107349540 + 20323990 20324263 AluY 311 + 27 301 108575 103 1 2 169 chain 125034 chr14 107349540 + 20333872 20335441 SVA_B 1603 + 0 1597 29382 24 1 25 402 119 0 293 0 40 124 0 82 203 7 8 396 chain 2577 chr14 107349540 + 20334378 20334418 SVA_B 1603 + 527 567 136777 40 chain 22869 chr14 107349540 + 20352470 20352733 AluSc5 308 + 23 286 116233 263 chain 47085 chr14 107349540 + 20366406 20366917 L1PA2 6032 - 2 513 61137 511 chain 37607 chr14 107349540 + 20372149 20372583 L1PA5 6144 + 5714 6143 72674 217 0 3 201 8 0 8 chain 250801 chr14 107349540 + 20379638 20382492 L1P1 4361 + 995 4325 16195 379 0 1 815 0 472 1432 1 0 54 1 0 55 0 6 96 1 0 20 chain 18716 chr14 107349540 + 20392701 20392930 L1PA8A 6298 + 5677 5906 130913 229 chain 86946 chr14 107349540 + 20422793 20423846 MER11C 1089 + 0 1063 40805 250 0 1 63 2 6 368 0 4 45 0 1 127 0 1 181 1 0 16 chain 30043 chr14 107349540 + 20428031 20428349 AluYb8 318 + 0 318 84664 318 chain 20135 chr14 107349540 + 20430679 20430908 L1PA3long 6157 - 1590 1819 125898 229 chain 142437 chr14 107349540 + 20430908 20432481 L1PA3long 6157 + 4583 6157 25739 1426 0 1 147 chain 23520 chr14 107349540 + 20433170 20433437 L1PA4 6152 - 9 276 113017 267 chain 29002 chr14 107349540 + 20433639 20433964 L1PA3long 6157 - 8 333 88978 325 chain 22663 chr14 107349540 + 20435975 20436254 AluSp 311 + 6 284 117251 267 1 0 11 chain 44337 chr14 107349540 + 20446907 20447718 HERVIP10F-int 4088 + 2465 3315 63777 220 0 28 269 27 24 51 104 139 7 1 0 17 9 5 17 25 21 12 2 1 8 3 0 5 21 13 13 chain 43878 chr14 107349540 + 20451138 20451687 MER41A 554 - 1 554 64360 70 0 4 479 chain 39420 chr14 107349540 + 20451698 20452192 MER41-int 2638 - 5 499 70132 180 0 1 244 1 0 69 chain 37397 chr14 107349540 + 20462724 20463190 MER4A1 472 + 0 472 72958 385 2 8 64 1 0 4 0 1 10 chain 8446 chr14 107349540 + 20463190 20463388 THE1D-int 1627 - 1481 1627 168594 37 54 0 67 27 29 13 chain 41916 chr14 107349540 + 20473095 20473683 L1PA8 5853 - 17 598 66737 76 1 0 19 2 1 47 1 0 14 1 0 69 2 0 38 18 17 300 chain 7361 chr14 107349540 + 20483387 20483547 L1MA8 2339 + 1955 2119 175026 23 13 21 10 1 0 51 1 0 21 24 22 16 chain 43851 chr14 107349540 + 20494112 20494650 L1PA6 6164 - 10 551 64386 435 0 3 103 chain 3201 chr14 107349540 + 20501845 20501916 MADE1 96 - 24 94 220922 14 21 20 36 chain 392946 chr14 107349540 + 20505713 20510094 L1PA3long 6157 - 410 4791 10363 712 1 0 1772 0 1 1309 2 1 396 0 1 189 chain 50612 chr14 107349540 + 20510105 20510672 L1PA3long 6157 + 5589 6157 58572 234 0 1 333 chain 33569 chr14 107349540 + 20547478 20547843 L1PA3long 6157 + 5791 6157 78290 272 0 1 93 chain 48700 chr14 107349540 + 20550552 20551103 L1PA3long 6157 - 1 569 59960 171 0 16 194 0 1 186 chain 22399 chr14 107349540 + 20551103 20551352 L1PA3long 6157 + 5333 5582 118489 249 chain 80508 chr14 107349540 + 20552745 20553715 LTR5_Hs 974 + 0 974 43385 820 7 14 9 1 0 28 2 0 103 chain 7185 chr14 107349540 + 20553717 20553941 L1MA8 2339 + 1995 2189 176175 13 2 1 68 112 83 29 chain 16636 chr14 107349540 + 20554483 20554658 L1HS 6032 - 0 175 136566 175 chain 77848 chr14 107349540 + 20555219 20556073 L1PA3long 6157 - 5 860 44596 486 0 1 368 chain 3867 chr14 107349540 + 20558325 20558368 5S 121 + 47 90 209341 43 chain 3004 chr14 107349540 + 20560386 20560420 HSMAR1 1287 + 1252 1286 224964 34 chain 87797 chr14 107349540 + 20567171 20568382 LTR12E 1234 + 0 1234 40453 178 21 9 99 0 1 169 3 0 5 43 46 91 2 3 233 11 13 193 0 4 27 0 1 37 13 39 86 chain 551595 chr14 107349540 + 20571816 20577967 L1PA3long 6157 + 6 6157 1241 1440 1 0 741 1 0 988 6 7 2436 0 1 538 chain 84976 chr14 107349540 + 20586665 20587751 MER11B 1079 - 0 1079 41520 29 1 0 161 4 5 11 0 1 103 1 3 25 10 0 194 6 5 4 0 1 537 chain 18372 chr14 107349540 + 20590841 20591205 L1MA5A 2387 - 126 460 131872 28 50 21 29 1 0 15 16 14 43 26 29 13 1 0 36 1 0 32 0 1 73 chain 309250 chr14 107349540 + 20596048 20599490 L1PA3long 6157 - 5 3451 13033 1290 0 1 1172 2 0 844 0 4 70 0 1 64 chain 49763 chr14 107349540 + 20601063 20601704 L1PA8 5853 + 5215 5853 59184 252 0 3 45 0 1 48 1 0 44 6 4 66 2 1 15 8 7 39 2 1 19 1 0 93 chain 26874 chr14 107349540 + 20614671 20614960 L1PA2 6032 - 2 291 96725 289 chain 13299 chr14 107349540 + 20618087 20618405 L1PA15 4387 + 4046 4349 147084 38 33 35 11 1 0 54 4 3 20 18 13 35 26 23 36 3 1 11 8 3 20 chain 193015 chr14 107349540 + 20619747 20621876 L1PA3long 6157 + 4028 6157 19770 2129 chain 6697 chr14 107349540 + 20623098 20623210 L1MA4 2864 - 288 400 179706 47 8 9 21 3 2 33 chain 5564 chr14 107349540 + 20624180 20624492 L1PREC2 3366 + 2971 3214 189447 31 10 8 41 3 1 11 130 78 14 54 41 18 chain 38125 chr14 107349540 + 20626385 20626808 L1PA4 6152 + 5729 6152 71948 423 chain 40399 chr14 107349540 + 20642241 20642695 L1PA4 6152 - 0 459 68738 6 0 5 448 chain 32737 chr14 107349540 + 20642695 20643051 L1PA4 6152 + 5362 5718 79632 356 chain 18521 chr14 107349540 + 20645598 20645883 HERV1_LTRe 372 - 107 364 131446 102 13 0 75 1 0 37 2 0 20 11 0 17 1 0 6 chain 106649 chr14 107349540 + 20680185 20681608 SVA_D 2077 + 12 1740 35080 36 11 0 389 0 272 52 0 40 103 2 0 8 52 0 32 19 8 41 1 0 4 1 0 37 1 2 12 1 0 49 1 0 33 0 1 4 70 46 39 1 0 4 1 0 128 0 97 291 chain 3344 chr14 107349540 + 20680786 20680838 SVA_D 2077 + 997 1050 112574 37 1 2 6 0 1 5 1 0 2 chain 5520 chr14 107349540 + 20681074 20681144 SVA_D 2077 + 985 1054 76852 12 1 0 37 1 2 12 1 0 6 chain 85338 chr14 107349540 + 20684641 20685644 LTR13 1007 - 0 1007 41403 47 4 6 138 0 1 429 4 5 381 chain 508353 chr14 107349540 + 20689475 20704460 L1PA4 6152 - 12 6148 6292 6 1 0 242 0 1 424 8972 0 3660 0 1 860 0 4 42 1 129 64 14 0 127 1 0 346 1 5 74 0 1 150 chain 3164 chr14 107349540 + 20698733 20698770 L1PA4 6152 - 297 334 221667 37 chain 89025 chr14 107349540 + 20709720 20710737 LTR5A 1029 - 6 1029 39992 876 1 0 32 0 3 100 0 4 8 chain 130308 chr14 107349540 + 20717016 20718465 L1PA4 6152 - 1 1449 28017 147 0 1 519 0 1 189 4 1 590 chain 129169 chr14 107349540 + 20732789 20734226 L1PA3long 6157 + 3278 4715 28273 868 0 1 4 1 0 564 chain 128856 chr14 107349540 + 20734227 20735659 L1PA3long 6157 + 4715 6152 28344 1256 0 1 33 0 4 143 chain 77835 chr14 107349540 + 20737081 20738049 LTR5_Hs 974 + 0 974 44603 288 0 1 315 1 2 143 12 11 59 8 15 31 8 6 103 chain 12513 chr14 107349540 + 20742271 20742429 MSTB-int 1649 - 1473 1635 150196 61 0 3 47 1 2 49 chain 545573 chr14 107349540 + 20748206 20754351 L1PA4 6152 + 1 6152 2001 119 0 1 333 1 0 580 1 0 210 1 0 1339 0 4 1102 1 0 658 0 4 1066 0 1 399 0 1 80 1 0 70 16 16 168 chain 22641 chr14 107349540 + 20756590 20756862 AluSg7 307 - 24 298 117370 151 0 1 111 0 1 10 chain 5566 chr14 107349540 + 20771474 20771541 Tigger4b 360 + 236 303 189426 67 chain 170051 chr14 107349540 + 20777475 20779444 SVA_D 2077 + 0 2073 22042 4 1 0 6 1 0 6 1 0 12 0 11 648 0 40 181 2 0 4 2 0 31 55 64 27 2 4 314 0 49 672 chain 27944 chr14 107349540 + 20793299 20793594 AluYa5 310 + 1 296 93190 295 chain 14972 chr14 107349540 + 20800186 20800345 AluSp 311 - 5 164 141403 159 chain 3484 chr14 107349540 + 20804096 20804133 MSTC 436 + 387 424 215606 37 chain 7805 chr14 107349540 + 20883145 20883235 5S 121 + 0 90 172277 90 chain 60333 chr14 107349540 + 20894687 20895352 L1PA3long 6157 + 5493 6157 52662 405 1 0 259 chain 55927 chr14 107349540 + 20911351 20911975 SVA_B 1603 + 901 1603 55169 23 0 78 601 chain 21736 chr14 107349540 + 20921529 20921826 AluSp 311 - 16 311 121255 157 8 6 12 12 11 33 0 1 75 chain 22137 chr14 107349540 + 20953147 20953437 AluSp 311 - 20 311 119636 232 10 11 48 chain 23923 chr14 107349540 + 20972596 20972865 AluY 311 + 32 301 110790 269 chain 77575 chr14 107349540 + 20973493 20974336 SVA_D 2077 + 55 898 44703 843 chain 31451 chr14 107349540 + 20974373 20974752 SVA_F 1814 + 664 1274 81729 41 2 122 22 0 113 39 1 0 171 1 0 102 chain 83455 chr14 107349540 + 20974809 20975769 SVA_E 1901 + 821 1882 42136 16 0 1 42 0 1 4 14 38 35 2 1 136 1 0 72 10 88 8 1 0 619 chain 4149 chr14 107349540 + 21034889 21035471 MER4E1 777 - 0 582 59067 232 16 24 42 0 1 59 10 0 187 0 1 36 chain 32101 chr14 107349540 + 21035474 21035997 MLT2A1 477 + 0 477 80690 107 82 0 33 0 1 27 1 5 150 1 0 62 4 0 7 16 52 33 chain 429980 chr14 107349540 + 21035997 21041282 HERVL-int 5654 + 0 5654 9308 297 0 1 256 4 9 219 0 1 4 1 0 188 15 19 498 0 330 84 5 6 160 1 10 83 1 2 97 0 3 6 12 9 435 3 0 348 0 7 138 1 2 194 0 1 299 0 1 4 1 0 159 2 1 183 0 2 53 0 1 576 0 1 281 8 6 244 2 0 65 0 6 144 0 7 214 chain 27977 chr14 107349540 + 21041282 21041690 MLT2A1 477 + 0 470 93086 90 18 30 7 4 0 15 0 1 16 0 22 142 1 0 62 4 0 12 2 38 35 chain 1397 chr14 107349540 + 21041697 21041893 MER4E1 777 - 582 777 59067 18 1 0 4 0 1 155 1 0 17 chain 12506 chr14 107349540 + 21043129 21043275 MLT2A1 477 + 0 146 150224 146 chain 3390 chr14 107349540 + 21056893 21056931 MER96B 391 - 57 95 217291 38 chain 6948 chr14 107349540 + 21077494 21077566 tRNA-Pro-CCY 72 - 0 72 177846 72 chain 7939 chr14 107349540 + 21078290 21078372 tRNA-Leu-CTY 82 + 0 82 171394 82 chain 6948 chr14 107349540 + 21081559 21081631 tRNA-Pro-CCY 72 - 0 72 177845 72 chain 18905 chr14 107349540 + 21083893 21084132 AluY 311 + 37 280 130348 95 0 1 5 0 3 139 chain 6158 chr14 107349540 + 21093529 21093608 tRNA-Leu-CTA_ 78 + 0 78 183920 49 2 1 28 chain 10190 chr14 107349540 + 21097343 21097689 L1MC1 2226 - 121 449 159673 22 5 0 6 47 44 41 31 26 35 7 6 11 34 29 31 29 30 47 chain 3729 chr14 107349540 + 21099352 21099391 tRNA-Thr-ACA 39 - 0 39 211503 39 chain 6734 chr14 107349540 + 21101164 21101236 tRNA-Pro-CCA 73 + 0 72 179445 72 chain 136014 chr14 107349540 + 21102659 21104582 L1PB2 3958 + 1931 3838 26831 64 1 0 150 0 7 16 5 0 177 13 12 27 14 16 81 4 0 265 1 0 14 3 1 95 22 19 49 1 0 37 1 2 123 0 13 118 0 4 56 0 1 31 2 0 11 14 12 29 1 0 16 5 0 61 3 1 12 2 0 89 1 0 43 2 1 10 1 0 23 1 0 64 2 1 68 2 0 12 4 0 12 6 5 59 chain 45829 chr14 107349540 + 21110887 21111463 LTR19B 566 + 0 566 62199 284 8 17 24 0 1 172 21 0 14 0 1 53 chain 4399 chr14 107349540 + 21118403 21118451 Tigger3b 1229 + 54 102 201948 48 chain 3556 chr14 107349540 + 21121314 21121351 tRNA-Tyr-TAC 38 - 1 38 214436 37 chain 75699 chr14 107349540 + 21122543 21123584 MER11C 1089 - 30 1089 45650 21 0 1 117 1 0 44 1 2 10 30 31 88 1 2 5 0 1 38 1 0 4 1 5 112 17 15 242 0 4 61 0 9 247 chain 3556 chr14 107349540 + 21125679 21125716 tRNA-Tyr-TAC 38 - 1 38 214435 37 chain 3556 chr14 107349540 + 21128173 21128210 tRNA-Tyr-TAC 38 - 1 38 214434 37 chain 3556 chr14 107349540 + 21131407 21131444 tRNA-Tyr-TAC 38 - 1 38 214433 37 chain 9588 chr14 107349540 + 21132210 21132342 THE1A 353 - 0 133 162652 87 7 8 38 chain 128975 chr14 107349540 + 21132899 21134791 THE1A-int 1579 - 0 1579 28315 692 0 1 257 4 0 134 6 0 70 305 0 16 1 2 407 chain 26440 chr14 107349540 + 21134791 21135138 THE1A 353 - 0 353 98269 168 1 2 47 1 7 19 1 0 110 chain 8823 chr14 107349540 + 21147569 21147668 HY3 101 + 0 99 166534 99 chain 3138 chr14 107349540 + 21149854 21149887 tRNA-Thr-ACA 39 + 6 39 222225 33 chain 3556 chr14 107349540 + 21151431 21151468 tRNA-Tyr-TAC 38 + 0 37 214432 37 chain 6948 chr14 107349540 + 21152174 21152246 tRNA-Pro-CCA 73 + 0 72 177836 72 chain 30314 chr14 107349540 + 21158092 21158410 AluYb8 318 + 0 318 83875 318 chain 52680 chr14 107349540 + 21235027 21235764 MER4E1 777 + 0 765 57198 155 14 19 4 1 0 124 5 6 21 0 19 68 0 2 8 7 8 52 5 9 45 14 10 93 0 1 121 chain 12490 chr14 107349540 + 21265282 21265447 Tigger3b 1229 + 931 1106 150293 57 2 12 106 chain 39660 chr14 107349540 + 21267507 21268006 HERV1_LTRd 520 + 0 511 69813 26 0 1 24 1 13 277 1 0 15 2 4 58 1 0 50 1 0 43 chain 5203 chr14 107349540 + 21268017 21268079 LTR47A 437 - 73 135 192999 62 chain 5623 chr14 107349540 + 21273217 21273414 MER34A 573 - 43 238 188847 4 1 0 4 1 0 30 1 0 30 0 6 6 81 71 14 1 6 24 chain 14781 chr14 107349540 + 21284690 21284889 LTR7B 505 - 234 505 141998 19 3 27 12 4 42 56 0 10 105 chain 26676 chr14 107349540 + 21287763 21288074 AluY 311 + 0 307 97403 189 4 0 118 chain 39861 chr14 107349540 + 21290875 21291351 LTR10F 562 - 1 562 69519 305 0 87 86 0 6 27 8 0 50 chain 207891 chr14 107349540 + 21291410 21294442 HERVIP10FH-int 2884 - 8 2735 18647 5 2 0 16 218 31 35 10 4 14 1 0 16 1 0 50 1 0 25 0 3 38 1 0 211 0 2 150 0 2 20 6 5 134 23 6 59 3 0 221 0 2 44 1 0 19 1 0 3 10 0 42 23 11 39 20 3 12 85 58 128 6 1 61 1 0 9 1 0 9 3 0 8 4 1 175 2 0 579 1 0 218 14 8 182 8 4 64 chain 45217 chr14 107349540 + 21296416 21297018 LTR10F 562 - 7 562 62810 79 1 0 198 1 0 47 3 0 28 40 0 28 6 0 115 0 4 56 chain 1942 chr14 107349540 + 21296779 21296807 LTR10F 562 - 359 387 175094 28 chain 30495 chr14 107349540 + 21298929 21299312 MER48 407 - 0 403 83440 132 2 1 104 0 1 17 0 20 128 chain 181444 chr14 107349540 + 21300759 21304021 HERVH48-int 3304 - 66 3116 20851 19 99 67 67 62 46 68 6 3 18 27 26 7 2 0 22 1 0 9 13 5 25 2 0 8 2 0 5 5 0 28 127 93 5 2 0 11 2 0 5 2 0 19 2 0 30 3 1 13 6 4 42 1 0 19 1 0 3 1 0 48 1 0 157 0 4 14 7 6 47 2 1 12 2 1 68 2 0 18 1 0 143 0 1 111 0 2 7 5 0 271 1 0 90 1 0 25 1 0 64 0 3 50 1 2 73 1 0 8 1 0 12 1 0 64 9 22 26 20 14 11 3 0 20 1 0 19 46 43 22 11 6 29 2 0 14 1 0 20 1 0 11 4 1 30 0 5 82 25 17 70 10 5 26 1 0 41 11 9 57 71 55 53 3 1 9 1 0 65 28 22 9 6 0 14 1 0 71 1 0 5 6 2 66 1 0 4 30 24 11 14 1 35 2 0 25 2 0 8 chain 31286 chr14 107349540 + 21304463 21304883 MER48 407 - 0 407 82012 132 12 11 60 12 0 204 chain 4137 chr14 107349540 + 21319771 21319819 L1MC4 1079 + 708 756 205396 48 chain 534763 chr14 107349540 + 21328282 21334420 L1PA5 6144 + 0 6135 3619 151 28 33 145 1 0 833 16 7 633 0 1 37 0 5 409 9 1 58 4 2 462 0 2 427 0 1 63 1 0 235 1 2 175 1 0 237 0 1 427 0 4 943 1 0 841 chain 24563 chr14 107349540 + 21338141 21338428 AluSc 308 - 10 297 107176 287 chain 4099 chr14 107349540 + 21356468 21356513 MADE1 96 + 50 95 205961 45 chain 28847 chr14 107349540 + 21366545 21366879 L1PA5 6144 - 12 346 89681 160 1 0 4 0 1 169 chain 3671 chr14 107349540 + 21378277 21378322 MADE1 96 + 51 96 212358 45 chain 551226 chr14 107349540 + 21378757 21384892 L1PA3long 6157 + 15 6153 1285 350 2 0 2780 0 2 120 4 6 2660 0 1 219 chain 13830 chr14 107349540 + 21408209 21408448 L1MA3 4352 - 4 233 145130 17 3 0 3 1 0 13 1 0 28 7 8 21 2 0 82 1 0 23 4 1 33 chain 3854 chr14 107349540 + 21420569 21420615 MADE1 96 + 50 96 209568 46 chain 3293 chr14 107349540 + 21431203 21431239 L1MA2 4263 + 4069 4105 219104 36 chain 22084 chr14 107349540 + 21448568 21448862 AluY 311 + 0 299 119868 47 0 16 60 2 1 162 10 0 13 chain 48330 chr14 107349540 + 21471216 21472076 PABL_A 660 + 0 660 60219 40 221 21 24 8 5 10 0 2 59 5 2 202 1 5 290 chain 121629 chr14 107349540 + 21474888 21477372 PABL_A-int 1935 + 99 1922 30503 6 2 0 28 8 6 94 2 1 21 0 1 74 1 2 7 1 0 72 0 2 25 0 1 18 15 14 414 0 1 23 761 115 49 0 1 190 1 6 51 1 0 115 0 2 4 1 0 285 1 0 101 13 12 14 2 0 16 6 1 22 11 5 14 5 0 10 chain 54840 chr14 107349540 + 21477830 21478481 PABL_A 660 + 0 660 55807 81 0 9 570 chain 16871 chr14 107349540 + 21504494 21504709 MER30 238 - 1 238 135912 104 5 26 8 0 1 98 chain 25257 chr14 107349540 + 21514813 21515145 Tigger2 2703 - 38 376 103441 166 0 1 4 2 0 31 0 1 121 0 6 8 chain 51642 chr14 107349540 + 21582111 21583121 PABL_A 660 - 0 660 57868 73 345 0 13 0 1 182 2 1 23 4 0 277 12 11 79 chain 23347 chr14 107349540 + 21595497 21595845 THE1B 368 - 2 368 113938 28 1 4 118 7 8 33 12 11 99 6 21 44 chain 23604 chr14 107349540 + 21598468 21598751 AluSq2 311 + 7 290 112561 283 chain 16921 chr14 107349540 + 21605700 21605908 Tigger3c 601 + 345 553 135792 208 chain 24451 chr14 107349540 + 21608775 21609066 AluY 311 + 3 295 107797 123 0 1 168 chain 26274 chr14 107349540 + 21615028 21615357 L1PA7 6471 + 6139 6468 98920 166 8 0 7 1 9 147 chain 24075 chr14 107349540 + 21621875 21622162 AluSp 311 + 6 293 109898 287 chain 190963 chr14 107349540 + 21640176 21643569 L1PREC2 3366 + 140 3078 19959 30 1 0 10 3 1 19 7 2 7 1 0 24 4 3 10 1 0 11 4 1 10 0 2 15 2 1 114 1 0 67 4 1 16 375 5 419 2 0 41 2 8 17 4 0 8 7 10 9 0 3 92 13 14 144 2 0 17 42 39 31 1 2 21 18 20 309 4 7 209 31 19 395 0 2 158 2 0 98 0 1 170 7 5 22 11 0 6 12 0 18 7 6 13 1 0 28 1 0 4 37 34 17 6 1 14 8 6 25 84 61 39 3 1 7 1 0 4 1 0 15 chain 26055 chr14 107349540 + 21645874 21646157 AluY 311 + 11 295 99806 115 0 1 168 chain 63238 chr14 107349540 + 21649415 21650375 L1PB1 5432 - 5 925 51345 5 2 0 18 1 0 13 1 0 18 1 0 27 2 0 15 7 4 16 27 15 16 1 0 44 1 0 15 2 1 50 19 12 11 1 0 9 1 0 23 5 0 9 11 8 97 1 0 4 1 2 369 2 0 17 6 10 92 chain 12306 chr14 107349540 + 21651034 21651211 L1PB4 2604 - 34 215 150987 14 1 4 121 4 5 37 chain 109829 chr14 107349540 + 21656417 21657641 SVA_D 2077 + 76 2074 34251 267 4 1 219 1 42 160 0 741 556 5 0 12 chain 3035 chr14 107349540 + 21666424 21666464 L1MD2 1676 + 192 233 224289 4 0 1 36 chain 4159 chr14 107349540 + 21677064 21677111 MADE1 96 - 49 96 205109 47 chain 21869 chr14 107349540 + 21744718 21745005 AluSc5 308 - 13 300 120755 137 4 0 7 0 4 139 chain 21907 chr14 107349540 + 21767178 21767452 AluSp 311 - 17 303 120595 16 2 1 147 0 13 109 chain 44094 chr14 107349540 + 21776738 21777364 LTR9B 643 - 16 643 64098 32 0 1 139 18 19 99 4 3 101 30 29 185 0 1 18 chain 26712 chr14 107349540 + 21788457 21788749 AluYf4 310 - 19 310 97286 159 1 0 132 chain 23607 chr14 107349540 + 21807334 21807623 AluSc5 308 + 10 299 112540 289 chain 3367 chr14 107349540 + 21828872 21828910 tRNA-Ile-ATT 40 - 1 39 217732 38 chain 24593 chr14 107349540 + 21854714 21855011 AluYf4 310 + 0 296 107029 167 2 0 39 8 9 81 chain 21973 chr14 107349540 + 21858667 21858943 AluSg4 309 + 11 296 120344 236 5 14 35 chain 20178 chr14 107349540 + 21888924 21889163 AluSp 311 - 15 254 126596 239 chain 20136 chr14 107349540 + 21902194 21902498 AluSp 311 - 2 305 126725 198 58 57 48 chain 25456 chr14 107349540 + 21925870 21926169 AluSp 311 + 3 302 102428 299 chain 68198 chr14 107349540 + 22014288 22016643 THE1B-int 1605 - 0 1588 49160 173 0 1 299 1477 706 88 4 6 204 0 1 110 chain 24229 chr14 107349540 + 22023268 22023558 AluSp 311 - 23 311 109046 150 8 6 132 chain 26470 chr14 107349540 + 22036829 22037129 AluYc3 301 - 0 300 98167 300 chain 3534 chr14 107349540 + 22057627 22057665 LTR10A 586 + 226 264 214817 38 chain 26468 chr14 107349540 + 22061936 22062244 AluY 311 + 2 311 98172 130 0 1 178 chain 6261 chr14 107349540 + 22062462 22062547 L1MA4 2864 + 81 168 183078 75 0 2 10 chain 7613 chr14 107349540 + 22069929 22070018 5S 121 - 31 120 173455 89 chain 112442 chr14 107349540 + 22083031 22085586 L1PB1 5432 - 9 1581 33553 5 1 0 14 1 0 13 2 1 20 2 1 23 2 0 14 1 0 5 2 0 19 28 15 13 1 0 43 1 0 16 2 1 51 3 1 9 6 2 13 8 6 23 21 0 10 1 2 47 5 6 252 0 1 151 617 0 18 3 0 153 307 0 388 5 0 236 chain 26912 chr14 107349540 + 22143493 22143923 MER57A1 433 + 0 433 96588 36 5 13 169 14 12 42 52 50 19 1 0 92 chain 185708 chr14 107349540 + 22147798 22150409 MER57-int 2662 + 101 2662 20443 7 0 1 15 1 2 56 0 7 51 3 7 68 2 0 98 33 6 393 9 7 550 0 2 28 1 0 135 1 0 142 5 6 188 0 1 32 5 6 381 7 8 34 2 0 8 1 0 80 4 3 11 10 5 61 23 11 9 0 1 15 28 23 20 1 0 10 18 13 23 3 0 31 2 0 6 chain 184243 chr14 107349540 + 22156064 22158230 L1PA7 6471 - 1 2186 20566 253 0 1 182 3 5 405 0 1 40 0 5 387 1 0 199 8 7 307 0 12 381 chain 16261 chr14 107349540 + 22158230 22158458 L1P3 4156 + 47 285 136615 120 4 7 68 13 20 23 chain 111664 chr14 107349540 + 22165536 22166816 SVA_B 1603 + 44 1603 33756 390 0 116 252 1 165 9 1 0 34 1 0 18 0 1 574 chain 23561 chr14 107349540 + 22214078 22214362 AluSp 311 + 2 287 112790 220 1 0 53 0 2 10 chain 161958 chr14 107349540 + 22222062 22224210 L1P3 4156 + 2 2157 23071 219 2 3 27 1 0 56 3 0 12 1 0 75 6 7 360 5 6 11 6 5 64 0 1 138 0 1 83 0 1 204 17 16 36 36 37 75 0 4 429 0 2 264 0 1 18 chain 330986 chr14 107349540 + 22224399 22228165 L1PA4 6152 - 17 4107 12165 329 0 328 335 1 0 208 10 2 1417 2 3 531 1 2 299 3 5 180 0 1 450 chain 500061 chr14 107349540 + 22228357 22234523 L1PA6 6164 + 4 6162 6837 195 2 0 250 24 16 104 1 0 228 1 18 673 0 1 374 2 0 350 0 2 110 0 1 46 0 1 139 1 2 681 1 2 103 0 1 395 0 1 40 0 1 240 0 1 150 12 5 953 0 1 4 23 6 1064 chain 41889 chr14 107349540 + 22245011 22245546 MER41A 554 + 0 546 66771 87 5 6 20 0 10 133 3 4 262 1 0 24 chain 29818 chr14 107349540 + 22255337 22255675 L1PA4 6152 - 1 360 85382 32 0 21 306 chain 7174 chr14 107349540 + 22255852 22255948 L1PA15 4387 + 3088 3183 176249 79 1 0 16 chain 3693 chr14 107349540 + 22259261 22259300 MLT2B1 522 + 483 522 212043 39 chain 111589 chr14 107349540 + 22273877 22275200 L1PA7 6471 + 5126 6455 33782 296 0 1 5 1 0 191 3 2 286 0 6 400 1 2 140 chain 80605 chr14 107349540 + 22280693 22281927 L1MA2 4263 + 2463 3702 43340 77 1 2 10 0 5 85 1 0 55 5 0 15 0 1 62 9 15 120 0 2 115 8 7 252 18 19 128 59 60 91 17 13 60 9 8 37 chain 76400 chr14 107349540 + 22281959 22282821 L1PA4 6152 + 5285 6151 45263 92 0 1 306 0 2 308 0 1 156 chain 50625 chr14 107349540 + 22291058 22292082 L1PA8 5853 + 5141 5844 58561 246 6 8 171 1 0 34 342 23 39 0 1 18 1 0 13 2 0 5 6 7 34 2 1 19 1 0 84 chain 4337 chr14 107349540 + 22348715 22348765 MADE1 96 + 45 95 202741 50 chain 265453 chr14 107349540 + 22364773 22367664 L1PA2 6032 + 3139 6030 15419 2891 chain 82306 chr14 107349540 + 22371509 22372553 MER11C 1089 + 0 1063 42622 246 0 9 60 1 5 212 62 63 92 0 4 8 1 0 38 0 1 127 0 1 197 chain 17019 chr14 107349540 + 22397725 22397906 L1PA2 6032 - 18 199 135539 181 chain 16450 chr14 107349540 + 22418202 22418397 L1PA5 6144 + 5939 6135 137064 116 0 1 79 chain 290285 chr14 107349540 + 22436921 22440708 L1P2 5180 + 1386 5178 14001 821 0 2 108 8 5 356 0 9 528 2 0 155 16 15 66 0 13 233 0 1 6 1 0 553 1 0 7 0 1 237 21 17 75 13 14 92 0 1 4 6 5 180 7 0 199 1 0 47 1 0 38 1 0 4 chain 172678 chr14 107349540 + 22473247 22475198 L1PA4 6152 - 0 1964 21745 10 0 6 141 0 1 615 1 3 1021 0 4 163 chain 15736 chr14 107349540 + 22475201 22475373 L1PA4 6152 + 3993 4165 139154 172 chain 100698 chr14 107349540 + 22500785 22502036 L1PA6 6164 - 11 1275 36581 91 11 25 20 0 4 6 3 0 79 1 0 591 6 5 443 chain 87072 chr14 107349540 + 22527200 22528417 Tigger1 2417 + 464 1703 40749 61 39 40 59 2 1 292 0 1 383 2 0 83 17 20 114 5 6 23 8 24 83 0 3 46 chain 6365 chr14 107349540 + 22542412 22542513 MLT1C 463 + 2 105 182281 18 16 18 67 chain 47082 chr14 107349540 + 22542819 22543447 PABL_A 660 - 1 635 61138 35 11 10 111 9 7 406 0 9 56 chain 37624 chr14 107349540 + 22556221 22556648 L1PA4 6152 + 5715 6146 72657 40 0 3 243 0 1 144 chain 68243 chr14 107349540 + 22559420 22560234 L1PA5 6144 + 5280 6141 49142 7 0 3 4 0 1 50 0 5 129 4 40 287 8 9 240 0 1 85 chain 6917 chr14 107349540 + 22568848 22568929 LTR10E 629 - 161 242 178066 81 chain 22707 chr14 107349540 + 22568971 22569229 SVA_A 1864 - 341 602 117042 222 1 4 35 chain 33190 chr14 107349540 + 22571367 22571797 L1PA7 6471 + 6038 6467 78906 88 9 10 322 2 0 9 chain 3648 chr14 107349540 + 22605266 22605312 L1MC2 1988 + 1942 1987 212821 4 1 0 41 chain 8590 chr14 107349540 + 22620274 22620370 LTR19A 502 - 0 96 167790 96 chain 37462 chr14 107349540 + 22642933 22643408 LTR2B 499 + 9 499 72874 5 1 0 60 3 0 37 0 19 178 0 1 8 1 0 182 chain 6305 chr14 107349540 + 22665122 22665370 L1PB1 5432 - 10 238 37883 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 7 5 11 15 7 8 2 0 15 1 0 21 11 12 11 1 0 12 10 9 22 chain 23583 chr14 107349540 + 22665375 22665719 THE1B 368 + 0 356 112671 24 1 2 5 1 0 13 8 23 107 5 7 18 4 0 94 1 0 63 chain 115052 chr14 107349540 + 22665776 22667277 THE1B-int 1605 + 45 1589 32774 144 16 13 63 5 6 159 1 26 91 10 30 21 1 0 416 0 1 574 chain 23441 chr14 107349540 + 22667294 22667652 THE1B 368 + 2 368 113424 42 5 20 108 10 9 19 18 12 81 1 0 17 0 1 57 chain 31425 chr14 107349540 + 22667652 22668888 L1PB1 5432 - 238 1467 37883 24 20 14 12 8 6 24 3 0 9 1 2 290 0 1 101 8 10 18 0 3 5 2 0 49 2 0 17 5 1 6 0 6 575 1 0 56 chain 12459 chr14 107349540 + 22692705 22692943 L1PA15 4387 - 31 253 150423 21 17 12 10 2 0 43 9 6 47 2 1 9 4 0 22 2 1 50 chain 46833 chr14 107349540 + 22702805 22703752 PRIMA4_LTR 623 + 0 623 61351 188 8 4 22 318 1 20 3 0 26 0 1 70 1 0 50 5 2 192 0 3 44 chain 45530 chr14 107349540 + 22704448 22705019 LTR17 781 + 218 781 62477 81 10 0 28 0 1 386 3 0 6 1 4 49 0 1 7 chain 374153 chr14 107349540 + 22706622 22710964 HERV17-int 4347 + 12 4347 10957 14 2 1 50 2 1 34 2 0 18 10 9 619 0 3 687 0 1 28 14 7 1627 0 1 1235 chain 63827 chr14 107349540 + 22711279 22712069 LTR17 781 + 0 781 51088 299 10 0 28 0 1 387 22 0 11 1 23 32 chain 465836 chr14 107349540 + 22724249 22729592 L1PA5 6144 - 6 6144 8194 38 0 1 206 1 0 56 0 3 453 3 0 1498 0 1 200 1 0 158 0 1 1094 2 15 752 0 780 179 1 2 150 1 0 4 0 1 546 chain 4491 chr14 107349540 + 22744167 22744218 LTR16E1 515 + 420 471 200896 51 chain 26888 chr14 107349540 + 22751296 22751648 THE1A 353 + 0 349 96675 109 2 1 32 1 0 60 1 0 147 chain 20317 chr14 107349540 + 22781184 22781576 MSTD 398 - 0 398 126183 65 43 44 35 62 59 101 1 9 85 chain 28804 chr14 107349540 + 22793779 22794081 AluYa5 310 - 8 310 89880 302 chain 45331 chr14 107349540 + 22799194 22799736 MER41A 554 + 0 547 62681 307 0 5 235 chain 45333 chr14 107349540 + 22815121 22815750 L1PA13 3608 - 121 737 62678 19 1 0 20 2 0 5 2 0 47 2 0 39 1 0 22 1 0 61 2 0 115 1 0 31 1 0 257 chain 531840 chr14 107349540 + 22817351 22823434 L1PA5 6144 + 0 6139 3983 793 5 6 124 0 1 468 0 6 292 0 1 432 0 5 51 0 38 760 10 0 50 0 1 742 0 1 118 4 1 906 0 2 443 0 1 51 2 0 211 0 20 432 6 0 183 chain 170218 chr14 107349540 + 22833228 22835279 L1PA7 6471 + 4397 6453 22024 55 0 8 18 0 1 540 18 1 142 6 11 180 0 1 260 0 3 81 0 2 46 7 9 342 0 1 210 0 6 6 8 1 132 chain 40312 chr14 107349540 + 22835566 22836038 L1PA7 6471 + 5793 6265 68864 472 chain 13239 chr14 107349540 + 22836054 22836212 L1PA7 6471 + 6282 6441 147323 41 0 1 117 chain 6397 chr14 107349540 + 22878217 22878293 L1PA8 5853 + 5777 5853 182047 76 chain 31718 chr14 107349540 + 22960209 22960562 L1PA2 6032 + 5678 6031 81300 353 chain 25329 chr14 107349540 + 22996769 22997066 AluYa5 310 - 6 310 103078 43 0 1 41 3 4 64 1 3 131 0 3 14 chain 22367 chr14 107349540 + 23042365 23042628 AluY 311 + 34 301 118639 4 1 0 49 0 4 41 0 1 168 chain 538221 chr14 107349540 + 23084553 23090666 L1PA4 6152 - 12 6151 3118 428 0 1 351 1 0 15 0 6 45 1 0 939 0 4 858 0 4 32 0 1 2002 14 8 400 0 13 196 0 5 831 chain 3650 chr14 107349540 + 23099464 23099509 MER89 557 + 0 45 212793 45 chain 69510 chr14 107349540 + 23099760 23100715 MER11C 1089 - 26 1089 48606 143 1 0 56 0 1 125 0 1 38 1 0 7 0 4 93 6 4 15 47 46 144 1 0 44 1 0 25 0 4 58 0 9 16 0 5 68 8 99 58 chain 73786 chr14 107349540 + 23105171 23106008 SVA_D 2077 + 62 898 46627 146 4 1 444 0 1 63 1 2 179 chain 34866 chr14 107349540 + 23106052 23106946 SVA_F 1814 + 672 1219 76388 61 101 94 16 357 2 11 2 1 23 0 1 56 1 0 10 0 15 252 0 1 4 chain 8728 chr14 107349540 + 23106113 23106214 SVA_F 1814 + 966 1067 96716 101 chain 8396 chr14 107349540 + 23106236 23106410 SVA_F 1814 + 898 1102 93726 28 9 40 30 1 0 106 chain 2727 chr14 107349540 + 23106452 23106483 SVA_F 1814 + 904 935 209314 31 chain 6234 chr14 107349540 + 23106483 23106555 SVA_F 1814 + 886 975 160354 49 0 2 10 0 15 13 chain 2549 chr14 107349540 + 23106555 23106587 SVA_F 1814 + 861 894 148613 25 1 2 6 chain 86487 chr14 107349540 + 23106972 23107937 SVA_E 1901 + 812 1901 40974 5 1 0 110 4 0 29 9 0 11 0 138 796 chain 111266 chr14 107349540 + 23108063 23109272 SVA_F 1814 + 444 1814 33873 241 1 1 196 1 113 94 0 49 676 chain 23048 chr14 107349540 + 23127596 23127880 AluSp 311 - 25 311 115402 145 0 4 5 2 0 132 chain 22923 chr14 107349540 + 23129258 23129556 AluSq2 311 + 11 309 116002 117 1 2 34 1 0 145 chain 519956 chr14 107349540 + 23141260 23147364 L1PA5 6144 - 0 6144 5165 11 3 1 752 3 0 86 0 1 71 0 1 145 1 8 462 0 1 919 1 3 125 1 14 95 0 1 1134 0 2 821 0 1 63 1 0 256 9 0 1003 3 15 10 0 14 129 chain 19333 chr14 107349540 + 23147373 23148993 L1M1 2793 - 1645 1990 129132 145 1 0 13 1271 2 71 28 25 32 37 35 22 chain 363523 chr14 107349540 + 23149008 23153159 L1PA5 6144 + 1965 6144 11274 347 0 2 1134 0 1 95 1 14 125 1 3 1608 1 0 87 3 0 311 0 6 84 0 10 343 2 0 9 chain 7435 chr14 107349540 + 23153159 23153320 L1M1 2793 + 1140 1282 174546 30 10 9 15 0 1 34 13 5 16 4 0 19 4 0 6 3 0 7 chain 229311 chr14 107349540 + 23154939 23158459 L1P2 5180 + 3 3254 17337 142 6 5 14 130 137 17 185 12 17 37 10 13 3 0 21 16 18 39 42 23 33 0 1 5 19 20 12 100 23 171 26 5 42 0 15 129 0 4 8 0 19 7 1 2 4 1 0 474 4 5 47 0 2 23 0 1 51 1 0 1615 1 0 41 0 1 23 chain 7555 chr14 107349540 + 23173783 23173908 L1MB3 1562 + 839 962 173834 7 1 0 60 17 16 40 chain 23304 chr14 107349540 + 23190915 23191197 AluSc5 308 + 10 292 114181 282 chain 76029 chr14 107349540 + 23193893 23194861 LTR5_Hs 974 - 0 974 45465 103 20 18 19 8 15 163 1 0 80 1 0 4 0 1 103 0 1 178 0 1 288 chain 9868 chr14 107349540 + 23198374 23198497 MER85 139 + 6 139 161244 83 0 10 40 chain 23502 chr14 107349540 + 23202731 23202996 AluSp 311 - 26 291 113123 265 chain 14622 chr14 107349540 + 23205722 23205960 MER84 505 + 143 413 142516 107 4 25 42 0 1 15 0 2 5 28 36 37 chain 21985 chr14 107349540 + 23206880 23207165 AluSc 308 + 8 293 120290 165 11 11 109 chain 31397 chr14 107349540 + 23208459 23209006 LTR39 781 - 217 781 81820 21 43 66 9 1 0 39 1 2 31 34 36 49 1 0 264 20 11 9 1 3 24 chain 9926 chr14 107349540 + 23214301 23214467 L1MC4 1079 - 206 384 160942 29 20 29 39 0 4 6 1 0 71 chain 89066 chr14 107349540 + 23226966 23228008 L1PA6 6164 + 5121 6162 39981 16 0 1 177 1 0 222 3 5 607 3 0 13 chain 3062 chr14 107349540 + 23230330 23230365 L1M4c 1769 + 254 289 223773 35 chain 24213 chr14 107349540 + 23248660 23248962 AluSg4 309 - 14 309 109136 16 7 1 216 1 0 62 chain 16507 chr14 107349540 + 23262513 23262738 LTR8 732 + 39 273 136894 56 0 1 4 2 1 55 1 8 77 0 2 30 chain 45064 chr14 107349540 + 23273306 23273914 L1PA11 4918 + 3916 4504 62976 168 9 0 152 2 0 92 5 0 65 2 1 81 2 0 11 6 5 13 chain 9094 chr14 107349540 + 23321827 23321937 HY1 111 - 1 111 165096 110 chain 4879 chr14 107349540 + 23337039 23337125 HY3 101 + 14 101 196493 10 0 14 6 14 0 41 0 1 15 chain 4702 chr14 107349540 + 23398909 23398958 tRNA-Arg-CGY_ 50 + 0 49 198515 49 chain 24519 chr14 107349540 + 23412103 23412380 AluSp 311 - 34 311 107443 277 chain 24413 chr14 107349540 + 23412741 23413047 AluSp 311 + 0 302 108013 10 3 0 146 0 1 91 2 0 54 chain 16448 chr14 107349540 + 23487820 23488043 AluY 311 + 79 300 137070 44 1 0 5 7 0 9 0 1 105 5 10 47 chain 22783 chr14 107349540 + 23542616 23542882 AluSp 311 + 10 297 116660 52 0 21 214 chain 63344 chr14 107349540 + 23576909 23577709 SVA_A 1864 - 7 1365 51301 424 0 4 102 40 528 36 1 0 37 3 0 39 3 0 38 3 76 74 chain 23099 chr14 107349540 + 23593501 23593835 LTR54 533 + 0 333 115147 13 8 7 39 0 1 117 1 4 69 8 4 79 chain 25141 chr14 107349540 + 23601208 23601510 AluSg7 307 - 4 307 104063 176 0 1 126 chain 3202 chr14 107349540 + 23608333 23608367 MER58B 340 - 9 43 220915 34 chain 4549 chr14 107349540 + 23625537 23625608 U6 107 - 20 92 200221 16 7 8 48 chain 19822 chr14 107349540 + 23650023 23650250 AluY 311 + 71 294 127744 62 1 0 148 3 0 13 chain 61578 chr14 107349540 + 23661225 23661905 L1PA5 6144 + 5464 6144 52083 680 chain 32589 chr14 107349540 + 23667001 23667367 LTR7Y 441 - 44 441 79873 181 1 32 184 chain 125644 chr14 107349540 + 23669834 23674246 MER4-int 2692 - 797 2618 29201 4 1 0 136 1 3 161 1 2 30 9 8 83 2 3 59 0 16 286 6 0 16 6 9 33 0 2 36 0 2 24 0 1 5 2 1 209 8 12 34 5 6 113 1 2 65 309 0 58 2 1 57 0 1 27 11 4 136 316 0 70 1982 0 45 1 2 15 2 0 5 0 1 13 2 0 25 chain 89462 chr14 107349540 + 23672976 23674137 L1PB1 5432 - 492 1663 39818 227 0 8 84 3 0 129 9 7 251 8 10 65 0 1 244 23 27 118 chain 34172 chr14 107349540 + 23676897 23677352 MER4A1 472 - 10 472 77389 55 14 12 190 1 5 6 2 0 6 0 5 21 0 1 151 0 1 9 chain 44328 chr14 107349540 + 23677791 23678651 MER41A 554 - 0 554 63790 16 7 7 143 309 0 263 0 3 122 chain 15375 chr14 107349540 + 23690060 23690291 L1MA3 4352 + 92 331 140276 12 0 1 51 1 0 21 16 11 20 0 3 74 0 8 20 0 2 16 chain 141741 chr14 107349540 + 23700823 23702630 SVA_C 1631 + 16 1629 25865 14 8 0 310 3 0 407 40 0 105 43 0 24 93 0 34 1 0 45 2 0 47 5 0 40 1 2 585 chain 6512 chr14 107349540 + 23701777 23701870 SVA_C 1631 + 835 922 130560 22 4 0 7 1 0 46 1 0 12 chain 31114 chr14 107349540 + 23719838 23720274 MER4A1 472 - 0 472 82317 68 19 31 117 9 31 200 8 10 15 chain 50788 chr14 107349540 + 23730100 23730689 LTR10C 591 - 0 591 58442 81 0 2 508 chain 38769 chr14 107349540 + 23748394 23748886 LTR10F 562 - 0 560 71057 62 6 2 123 0 2 141 0 42 13 2 30 145 chain 6617 chr14 107349540 + 23759366 23759447 L1PA8 5853 + 5772 5853 180320 81 chain 6935 chr14 107349540 + 23760135 23760231 L1PB1 5432 + 5332 5423 177931 14 2 0 24 1 0 23 1 0 11 1 0 19 chain 20597 chr14 107349540 + 23761548 23761797 AluY 311 + 38 287 125305 249 chain 29875 chr14 107349540 + 23798201 23798519 AluYb8 318 - 0 318 85186 318 chain 57046 chr14 107349540 + 23931538 23932166 L1PA3long 6157 - 0 627 54503 339 1 0 288 chain 9798 chr14 107349540 + 23934657 23934832 MER39 703 + 5 212 161603 94 10 7 28 29 64 14 chain 116838 chr14 107349540 + 23969135 23972081 L1PB1 5432 - 2 1975 32185 4 1 0 4 1 0 18 1 0 13 1 0 21 1 0 25 1 0 13 9 6 14 15 7 9 3 0 9 7 6 45 1 0 9 8 7 51 3 1 9 2 0 3 2 0 12 3 2 4 1 0 24 13 11 20 5 1 284 2 1 99 3 6 64 3 0 19 1 0 39 0 1 177 13 15 75 0 1 78 1 0 20 1204 263 208 1 5 270 chain 5502 chr14 107349540 + 24050444 24050530 LTR12C 1709 + 939 1025 147781 86 chain 23994 chr14 107349540 + 24050541 24051470 LTR12C 1709 + 676 1709 110362 161 1 0 18 0 41 81 360 506 11 1 0 19 216 135 61 chain 160457 chr14 107349540 + 24052858 24056307 L1PA7 6471 - 3 1909 23279 246 1552 0 91 1 0 507 0 4 102 0 1 31 0 6 814 8 7 97 chain 131107 chr14 107349540 + 24053108 24054656 LTR12C 1709 - 0 1709 27834 481 0 4 61 8 10 36 3 1 5 1 0 115 0 159 438 1 0 85 1 0 4 0 1 309 chain 13199 chr14 107349540 + 24073997 24074187 MER41B 635 - 445 635 147472 61 8 9 27 1 0 93 chain 13029 chr14 107349540 + 24078862 24079018 THE1B-int 1605 - 437 608 148139 97 0 15 59 chain 8569 chr14 107349540 + 24079033 24079131 THE1-int 844 + 445 543 167921 98 chain 79475 chr14 107349540 + 24097428 24098927 HSMAR1 1287 + 0 1246 43838 84 331 0 32 11 9 264 9 12 52 1 16 10 0 4 65 12 3 7 0 9 49 44 96 61 0 3 128 30 33 309 chain 19217 chr14 107349540 + 24103922 24104274 MSTA 426 + 0 392 129480 71 1 0 37 16 40 58 66 63 27 1 21 75 chain 79093 chr14 107349540 + 24104835 24107605 LTR12D 1347 + 0 1347 44004 184 79 149 203 0 31 127 0 17 23 1617 0 165 5 0 86 0 97 127 5 2 10 32 18 4 0 1 103 chain 24763 chr14 107349540 + 24105509 24105858 LTR12D 1347 + 768 1347 106098 227 15 244 4 0 1 103 chain 75671 chr14 107349540 + 24105969 24106914 HERV9-int 5642 + 0 948 45676 459 1 0 314 14 18 157 chain 11124 chr14 107349540 + 24106918 24107049 LTR12D 1347 + 567 698 155718 131 chain 32570 chr14 107349540 + 24124570 24125023 MLT2A1 477 - 0 477 79909 20 1 0 30 11 32 167 11 9 47 0 4 25 0 1 21 0 1 6 1 0 68 0 1 45 chain 28407 chr14 107349540 + 24128745 24129054 L1PA3long 6157 + 5834 6143 91553 309 chain 238436 chr14 107349540 + 24156609 24159891 L1P2 5180 - 2114 5177 16854 133 0 1 505 13 0 107 0 3 725 0 1 149 1 0 4 2 17 406 206 4 218 18 0 6 1 0 256 15 0 7 0 14 48 8 7 202 7 6 42 67 66 136 chain 17205 chr14 107349540 + 24158666 24158860 L1PA4 6152 - 11 205 135025 194 chain 37228 chr14 107349540 + 24161760 24162285 LTR61 567 + 0 527 73199 25 0 1 15 2 5 9 0 11 47 15 0 275 32 34 105 chain 41483 chr14 107349540 + 24165457 24166358 HERV3-int 2824 + 1827 2695 67302 17 2 0 113 19 13 17 1 0 14 10 7 17 1 0 9 1 0 26 1 0 4 31 29 4 1 0 49 2 0 8 1 0 4 1 0 20 1 0 4 1 0 60 2 9 12 45 54 16 6 10 69 4 3 67 1 0 33 48 39 42 3 0 13 11 10 13 6 3 24 1 0 7 15 6 12 1 0 11 chain 38116 chr14 107349540 + 24167609 24168177 LTR61 567 + 0 567 71961 25 0 1 27 5 16 44 15 0 109 1 2 164 9 12 17 6 5 103 14 13 29 chain 56552 chr14 107349540 + 24172688 24173481 HSMAR1 1287 + 6 792 54823 71 8 0 47 4 1 339 16 17 69 0 9 7 9 1 40 0 1 128 1 0 9 0 2 45 chain 29855 chr14 107349540 + 24175024 24175345 AluYb8 318 - 0 318 85261 57 3 0 261 chain 28935 chr14 107349540 + 24175570 24175872 AluYa5 310 - 8 310 89294 302 chain 37809 chr14 107349540 + 24176393 24176924 LTR12F 595 - 0 595 72402 203 2 0 157 6 72 19 3 1 26 21 22 53 0 1 41 chain 69559 chr14 107349540 + 24183232 24184023 L1PA4 6152 + 5361 6152 48584 613 16 17 4 1 0 157 chain 107307 chr14 107349540 + 24205514 24206771 SVA_B 1603 + 8 1603 34891 14 0 5 14 22 6 471 0 273 91 0 38 21 3 1 20 0 40 601 chain 509568 chr14 107349540 + 24207829 24214260 L1PA5 6144 - 0 6144 6200 152 1 20 38 6 9 1154 1 2 846 0 1 48 1 0 190 0 4 421 326 0 91 0 1 853 2 1 116 1 3 210 0 1 233 0 1 322 1 0 257 9 0 91 1 4 723 16 17 114 1 0 87 9 23 63 6 7 41 chain 38712 chr14 107349540 + 24214694 24215175 L1PA7 6471 + 5970 6464 71133 360 11 24 110 chain 482684 chr14 107349540 + 24225934 24231565 L1PA5 6144 - 6 5650 7636 267 0 2 560 0 1 961 1 7 59 0 2 287 0 2 116 0 1 141 0 1 363 0 1 1170 1 3 1025 17 8 53 0 1 86 0 1 317 1 2 148 0 1 58 chain 11228 chr14 107349540 + 24232442 24232571 L1PA3long 6157 + 6028 6157 155317 129 chain 22893 chr14 107349540 + 24238467 24238806 MER1B 344 - 7 335 116136 61 4 5 51 4 0 127 22 14 70 chain 14787 chr14 107349540 + 24259799 24259973 MER41A 554 - 380 554 141981 174 chain 12821 chr14 107349540 + 24261130 24261338 7SK 245 + 0 236 148969 72 41 69 95 chain 23559 chr14 107349540 + 24261341 24261664 MER41-int 2638 - 1136 1455 112805 121 1 0 168 8 5 25 chain 42314 chr14 107349540 + 24264170 24264706 MER41A 554 - 0 554 66253 152 0 19 79 5 3 120 0 1 180 chain 10054 chr14 107349540 + 24279405 24279544 Tigger1 2417 + 1317 1455 160306 55 2 0 57 1 2 24 chain 13656 chr14 107349540 + 24279987 24280138 L1PA4 6152 + 6001 6152 145754 151 chain 52208 chr14 107349540 + 24288563 24289164 L1PA5 6144 + 5512 6140 57495 298 0 1 30 1 27 272 chain 118976 chr14 107349540 + 24291002 24292677 L1PA13 3608 - 123 1817 31424 17 1 0 20 2 0 4 2 0 48 9 5 31 2 0 26 4 3 58 2 0 64 7 5 47 1 0 21 0 6 453 7 8 51 0 1 187 13 18 149 6 7 12 1 5 182 0 1 11 4 10 7 1 0 24 4 11 8 0 3 17 0 4 13 1 0 45 1 0 112 chain 182347 chr14 107349540 + 24315576 24318325 L1PREC2 3366 - 338 3068 20753 18 6 4 35 23 8 11 4 1 29 99 80 36 6 5 46 22 20 24 2 0 130 1 5 86 2 0 5 10 13 120 10 11 39 12 13 19 1 2 105 7 12 471 0 1 254 7 11 86 92 93 121 4 5 141 2 0 490 3 10 170 chain 4432 chr14 107349540 + 24336078 24336130 MIR 256 - 180 232 201555 52 chain 43358 chr14 107349540 + 24339914 24340432 L1PA7 6471 + 5946 6465 64982 362 4 5 152 chain 3134 chr14 107349540 + 24340533 24340569 L1MC1 2226 - 833 869 222284 36 chain 39834 chr14 107349540 + 24343486 24344064 Tigger1 2417 - 1539 2132 69573 11 0 2 110 0 4 186 0 4 92 13 14 108 40 44 18 chain 133329 chr14 107349540 + 24360782 24362331 LTR12C 1709 + 0 1709 27364 419 2 1 302 0 1 114 1 0 123 1 158 106 0 4 481 chain 119466 chr14 107349540 + 24366901 24368471 SVA_B 1603 - 0 1603 31237 6 2 0 582 26 0 62 1 128 29 40 0 47 4 1 38 4 0 7 5 9 57 3 0 566 3 32 24 49 0 15 chain 12853 chr14 107349540 + 24376818 24377040 MER2 342 - 102 329 148826 158 46 51 18 chain 70885 chr14 107349540 + 24387911 24388678 L1PA2 6032 - 2351 3118 47826 767 chain 217092 chr14 107349540 + 24388678 24391022 L1PA2 6032 + 3687 6032 18052 2192 0 1 152 chain 39141 chr14 107349540 + 24408784 24409253 LTR7C 471 - 0 471 70554 32 0 2 437 chain 16783 chr14 107349540 + 24410930 24411233 MSTB 430 - 18 430 136152 82 65 173 85 4 5 67 chain 76116 chr14 107349540 + 24413281 24414154 MER11D 897 - 0 897 45412 119 0 1 161 0 23 593 chain 336011 chr14 107349540 + 24414154 24418820 L1PA7 6471 + 2116 6469 11998 213 10 7 13 1 0 173 322 0 87 24 25 139 2 0 87 8 9 24 5 6 179 1 0 4 5 6 396 9 8 175 0 9 333 1 0 208 15 16 184 9 5 250 1 2 112 0 1 805 7 11 20 0 6 71 0 2 349 0 1 246 12 10 150 5 0 11 chain 32927 chr14 107349540 + 24419622 24420011 LTR3 431 - 41 431 79323 28 0 1 361 chain 25874 chr14 107349540 + 24436092 24436391 AluYk4 311 + 10 310 100553 190 0 1 109 chain 34297 chr14 107349540 + 24441332 24441772 LTR12D 1347 - 0 515 77217 217 8 9 20 7 81 188 chain 61206 chr14 107349540 + 24441779 24442498 LTR5A 1029 - 0 720 52251 67 1 0 195 0 2 456 chain 279943 chr14 107349540 + 24442749 24446322 L1PA6 6164 + 2288 6161 14645 45 0 1 252 13 16 575 22 19 44 5 9 451 1 0 80 1 317 152 0 1 100 12 16 436 4 6 25 28 0 482 0 3 165 0 1 665 3 0 12 chain 8814 chr14 107349540 + 24446761 24447327 LTR24B 570 + 0 570 166589 43 1 0 17 1 5 18 414 414 55 0 1 17 chain 344951 chr14 107349540 + 24447895 24453252 L1PA7 6471 + 2195 6468 11756 437 0 1 73 0 4 161 8 0 269 0 1 348 1 0 4 0 1 9 5 4 306 17 16 177 1 0 444 2 0 218 0 4 313 1 0 7 1002 0 65 0 2 46 0 1 185 39 0 21 39 0 127 27 28 153 3 1 79 0 2 605 10 9 7 0 1 4 1 0 133 3 0 7 chain 82806 chr14 107349540 + 24450702 24451698 LTR5B 1012 - 0 1012 42416 8 0 2 257 0 1 602 1 14 128 chain 32179 chr14 107349540 + 24454044 24454469 LTR3 431 - 0 431 80562 56 10 16 359 chain 20278 chr14 107349540 + 24455477 24455724 L1PA6 6164 + 5915 6162 126285 247 chain 183406 chr14 107349540 + 24471166 24473172 L1PA2 6032 - 0 1983 20640 12 23 0 1971 chain 25552 chr14 107349540 + 24473207 24473497 AluYk4 311 + 10 301 101975 190 0 1 100 chain 33915 chr14 107349540 + 24478457 24478886 LTR12D 1347 - 0 504 77749 217 0 1 28 4 0 1 0 78 179 chain 86976 chr14 107349540 + 24478904 24479929 LTR5A 1029 - 0 1029 40794 67 1 0 195 0 2 17 0 4 597 1 0 147 chain 60727 chr14 107349540 + 24484260 24484971 LTR5A 1029 - 0 710 52458 67 1 0 643 chain 307367 chr14 107349540 + 24485231 24489094 L1PA6 6164 + 2288 6162 13113 45 0 1 53 0 1 4 1 0 194 13 16 572 25 22 44 5 9 269 2 1 181 1 0 189 0 3 37 0 1 8 1 0 311 0 1 112 0 4 914 0 2 20 0 1 5 4 0 175 0 1 678 chain 258273 chr14 107349540 + 24490669 24495035 L1P2 5180 + 1882 5178 15794 675 8 0 269 0 1 343 12 0 7 5 16 297 26 25 104 0 1 4 1 0 68 1 0 385 28 2 57 2 0 218 0 4 283 2 1 29 1 0 6 999 5 109 0 1 206 39 0 89 1 0 87 1 0 4 chain 82476 chr14 107349540 + 24493507 24494495 LTR5B 1012 - 0 1012 42551 8 0 2 68 0 6 181 0 3 602 1 14 128 chain 397022 chr14 107349540 + 24495455 24499931 L1PA4 6152 + 1667 6152 10199 856 1 0 392 0 1 689 0 1 748 0 4 888 1 0 895 0 5 6 chain 13805 chr14 107349540 + 24500008 24500189 L1PA7 6471 + 5395 5584 145251 74 0 5 28 0 2 27 0 1 52 chain 7649 chr14 107349540 + 24500197 24500300 L1PA7 6471 + 5595 5697 173236 26 1 0 76 chain 28576 chr14 107349540 + 24500304 24500639 L1PA7 6471 + 5704 6039 90836 335 chain 23115 chr14 107349540 + 24500639 24500907 L1PA7 6471 + 6040 6308 115064 268 chain 11003 chr14 107349540 + 24500913 24501061 L1PA7 6471 + 6313 6461 156196 26 0 3 6 3 0 113 chain 34344 chr14 107349540 + 24501856 24502272 LTR3 431 - 15 431 77133 416 chain 84761 chr14 107349540 + 24514458 24515550 Tigger1 2417 - 258 1364 41611 34 1 4 8 0 1 124 0 1 42 1 2 205 0 6 438 0 2 239 chain 42679 chr14 107349540 + 24574125 24574631 MER9a3 513 - 0 513 65800 184 0 7 66 1 0 242 0 1 13 chain 61813 chr14 107349540 + 24580898 24581578 L1P1 4361 - 70 749 51943 141 1 0 538 chain 95811 chr14 107349540 + 24581578 24582599 L1HS 6032 + 5009 6031 37873 924 0 1 97 chain 12595 chr14 107349540 + 24597060 24597235 Tigger1 2417 - 1661 1833 149862 136 11 8 28 chain 8183 chr14 107349540 + 24597468 24597569 Tigger1 2417 - 1677 1778 170053 101 chain 26192 chr14 107349540 + 24627963 24628268 AluY 311 + 0 309 99230 70 0 3 59 0 1 176 chain 25108 chr14 107349540 + 24668732 24669044 AluSc 308 - 0 308 104235 259 5 1 48 chain 88069 chr14 107349540 + 24671172 24672216 MER11C 1089 + 0 1063 40348 250 0 1 66 0 4 46 0 1 322 0 4 5 1 0 38 0 1 37 0 8 34 0 1 245 chain 25239 chr14 107349540 + 24672686 24672977 AluSp 311 + 2 292 103538 123 1 0 167 chain 11078 chr14 107349540 + 24672983 24673112 AluSp 311 + 4 133 155898 129 chain 12748 chr14 107349540 + 24673121 24673282 AluSp 311 + 143 301 149260 152 3 0 6 chain 28448 chr14 107349540 + 24674501 24674803 AluYa5 310 - 8 310 91381 302 chain 20384 chr14 107349540 + 24698999 24699283 AluSc 308 + 0 288 125947 30 10 19 6 6 0 94 4 5 134 chain 5893 chr14 107349540 + 24752921 24753006 MER67B 652 + 520 603 186248 19 1 0 31 1 0 33 chain 6847 chr14 107349540 + 24790140 24790266 MER1B 344 - 0 128 178604 22 11 11 27 15 17 51 chain 88548 chr14 107349540 + 24797004 24798024 LTR13 1007 + 0 1007 40168 426 13 0 581 chain 8880 chr14 107349540 + 24817000 24817109 THE1B 368 - 259 368 166230 109 chain 8488 chr14 107349540 + 24840496 24840681 MER20 218 - 4 177 168359 19 27 16 15 2 0 7 9 11 11 1 0 47 1 0 6 1 2 39 chain 4742 chr14 107349540 + 24854186 24854246 L1MD3 1191 + 85 146 197994 35 0 1 25 chain 29532 chr14 107349540 + 24913118 24913428 AluYa5 310 - 0 310 86519 310 chain 514499 chr14 107349540 + 24916800 24923242 L1PA5 6144 - 15 6143 5725 133 3 4 168 0 7 259 0 9 328 1 0 942 0 2 116 1 0 219 2 1 181 0 12 78 0 2 289 334 0 174 1 0 891 0 2 880 0 9 252 9 0 208 0 1 10 25 0 530 3 2 286 1 15 118 chain 41938 chr14 107349540 + 24924099 24924609 MER9a3 513 - 0 513 66702 77 0 1 179 1 0 145 10 11 85 0 2 13 chain 41713 chr14 107349540 + 24931613 24932071 L1PA3long 6157 - 15 473 67014 458 chain 80196 chr14 107349540 + 24939520 24940451 L1PA6 6164 - 5 940 43505 843 0 4 88 chain 21477 chr14 107349540 + 24942860 24943133 LTR12C 1709 + 691 963 122231 146 1 0 126 chain 2830 chr14 107349540 + 24943133 24943166 LTR12C 1709 + 685 718 190964 33 chain 28536 chr14 107349540 + 24948068 24948446 THE1C 375 - 0 375 91017 25 1 0 119 5 6 100 3 0 125 chain 111861 chr14 107349540 + 24948463 24950051 THE1C-int 1605 - 17 1605 33702 365 33 34 18 5 4 39 8 15 36 0 1 63 0 1 202 0 1 54 5 14 285 85 11 255 1 55 117 1 2 16 chain 24184 chr14 107349540 + 24950051 24950410 THE1C 375 - 0 375 109303 18 11 10 159 0 2 33 20 0 9 7 42 102 chain 253071 chr14 107349540 + 24955369 24958106 L1PA2 6032 - 1 2738 16077 2737 chain 118604 chr14 107349540 + 24958123 24959413 L1PA2 6032 + 1986 3276 31581 1290 chain 525112 chr14 107349540 + 24960641 24966773 L1PA5 6144 + 0 6144 4678 701 0 1 316 10 12 4 1 0 120 0 3 12 9 0 258 1 0 884 3 4 605 0 9 278 1 0 36 0 3 298 0 1 70 0 3 312 1 2 981 0 1 897 1 0 333 chain 22921 chr14 107349540 + 24972821 24973087 L1PA4 6152 + 5875 6143 116009 127 0 2 139 chain 171446 chr14 107349540 + 24988536 24990450 L1P1 4361 - 56 1973 21892 24 0 2 129 1 0 1469 0 1 150 0 1 141 chain 10958 chr14 107349540 + 24993139 24993273 L1PA3long 6157 + 6023 6151 156370 119 6 0 9 chain 371288 chr14 107349540 + 24995160 24999460 L1P1 4361 + 1 4328 11050 701 12 5 129 0 12 1045 0 3 261 0 1 156 1 0 366 0 1 691 1 0 422 0 21 336 1 0 154 1 0 23 chain 115468 chr14 107349540 + 25000000 25001274 L1PA3long 6157 + 4883 6157 32621 1274 chain 76205 chr14 107349540 + 25012374 25013428 MER11C 1089 + 7 1063 45359 100 0 1 141 1 2 66 0 4 65 1 0 36 8 4 105 48 47 13 15 13 86 0 4 5 1 0 38 0 1 325 chain 96797 chr14 107349540 + 25014864 25016512 L1MA1 4479 - 315 1808 37614 13 1 0 9 1 0 35 3 1 28 1 0 126 9 5 88 1 0 14 2 0 15 2 1 64 11 10 16 2 0 24 1 0 196 3 0 130 3 0 5 0 2 8 119 0 54 9 4 53 4 0 12 1 0 94 7 5 69 11 12 5 0 1 63 19 17 16 0 4 7 1 0 83 16 13 42 5 1 14 2 1 26 0 1 28 12 13 65 chain 23954 chr14 107349540 + 25018501 25018849 THE1B 368 - 12 368 110595 157 5 7 20 11 10 103 0 15 29 8 0 15 chain 62149 chr14 107349540 + 25020922 25021597 L1PA3long 6157 + 5482 6157 51832 675 chain 11845 chr14 107349540 + 25021800 25021961 L1MA1 4479 - 4092 4251 152849 109 3 1 49 chain 11523 chr14 107349540 + 25029990 25030147 L1P3 4156 + 3985 4139 154200 122 2 0 7 2 1 24 chain 346385 chr14 107349540 + 25053029 25057040 L1PA4 6152 - 11 6152 11713 494 0 1 443 0 2121 705 0 2 267 0 3 320 0 2 285 0 1 1497 chain 389163 chr14 107349540 + 25057309 25064357 L1PB1 5432 - 22 5356 10478 6 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 41 28 41 4 3 16 2 1 53 2 0 9 4 0 12 5 4 4 1 0 24 13 13 48 2 1 5 0 1 339 0 2 83 0 1 305 0 1 208 20 1 172 120 0 202 13 7 572 1 2 9 0 1 125 1 2 68 0 4 50 1 4 46 3 0 30 34 12 213 0 5 334 62 1 394 4 8 69 0 1 49 5 8 12 5 6 163 1528 31 29 0 5 49 9 14 290 0 1 515 3 9 40 3 4 7 1 0 61 0 3 71 12 9 323 chain 125521 chr14 107349540 + 25061465 25062944 L1PA7 6471 - 25 1516 29190 125 0 1 620 0 2 77 1 0 242 0 1 41 0 6 161 0 1 189 0 2 23 chain 102392 chr14 107349540 + 25067590 25068896 L1PA8 5853 - 0 1301 36163 91 1 0 18 1 0 51 1 0 14 2 1 39 6 7 24 2 0 46 1 0 217 2 1 4 0 1 255 0 2 55 9 10 7 2 0 458 chain 452405 chr14 107349540 + 25086646 25092658 L1PA8 5853 - 63 5745 8678 30 1 0 19 2 1 52 12 10 68 2 0 48 1 0 425 0 1 49 18 17 46 0 1 12 0 2 347 2 0 72 0 1 26 0 7 70 11 1 173 24 0 331 0 3 72 0 2 843 316 0 128 0 1 7 0 3 896 5 0 72 2 1 525 0 1 277 4 5 102 23 26 306 27 44 39 0 4 35 0 1 280 18 6 194 chain 25726 chr14 107349540 + 25117223 25117520 L1PA7 6471 - 950 1247 99371 297 chain 79844 chr14 107349540 + 25117520 25118471 L1PA7 6471 + 5499 6455 43662 122 1 0 91 0 3 283 0 2 67 0 1 387 chain 7963 chr14 107349540 + 25127878 25127971 THE1D 372 + 251 344 171268 93 chain 41660 chr14 107349540 + 25135585 25136050 L1PA3long 6157 - 0 465 67079 465 chain 33051 chr14 107349540 + 25145129 25145510 L1PA7 6471 - 10 391 79139 381 chain 25219 chr14 107349540 + 25145510 25145814 L1PA7 6471 + 5678 5989 103644 127 1 8 176 chain 28949 chr14 107349540 + 25155097 25155413 L1PA3long 6157 + 5826 6142 89228 316 chain 9913 chr14 107349540 + 25192622 25192769 L1PA17 2846 + 2547 2692 161005 16 0 1 34 7 6 28 1 0 17 1 0 43 chain 474351 chr14 107349540 + 25195535 25201809 L1PA8A 6298 + 28 6290 7900 6 6 0 6 1 0 18 2 1 7 3 0 5 2 0 7 6 1 21 3 0 11 0 1 10 2 0 11 6 0 14 13 11 12 1 0 7 0 1 11 2 0 13 2 0 5 2 1 12 4 3 6 1 0 6 1 0 8 1 0 6 12 8 9 4 3 36 1 0 26 6 0 76 2 0 15 1 0 9 6 4 90 0 8 63 1 0 4 1 2 527 3 0 7 2 0 126 1 4 44 5 9 183 5 7 563 0 2 59 3 2 82 0 2 17 0 1 263 0 1 4 1 0 39 2 1 39 0 1 101 0 12 271 0 4 382 1 6 11 1 0 17 4 3 97 7 33 149 33 5 717 0 4 82 0 1 11 1 0 64 15 14 80 0 1 175 11 10 95 0 2 18 0 1 177 4 6 41 2 1 22 0 1 255 21 0 9 0 21 171 0 3 71 0 3 139 0 1 169 4 0 249 chain 12179 chr14 107349540 + 25203314 25203453 L1PA4 6152 - 9 147 151498 59 1 0 79 chain 120915 chr14 107349540 + 25206154 25207735 THE1B-int 1605 - 0 1605 30724 212 17 0 482 0 3 204 0 1 4 19 18 220 13 45 188 3 9 219 chain 20122 chr14 107349540 + 25207735 25208075 THE1B 368 - 0 368 126764 119 7 0 8 7 26 19 1 0 23 2 1 48 17 19 38 7 23 44 chain 148968 chr14 107349540 + 25219751 25221407 L1PA4 6152 + 4494 6151 24761 1323 0 1 333 chain 203457 chr14 107349540 + 25223024 25225423 L1PA6 6164 - 15 2411 18964 48 19 15 681 9 9 81 0 1 257 1 0 1252 9 10 42 chain 78890 chr14 107349540 + 25225423 25226360 L1PA6 6164 + 2820 3760 44115 369 0 1 493 0 1 10 0 1 65 chain 205884 chr14 107349540 + 25231449 25233775 L1PA4 6152 - 633 2962 18800 706 2 0 374 5 6 145 0 2 603 0 1 316 0 1 175 chain 56953 chr14 107349540 + 25233775 25234404 L1PA4 6152 + 5522 6151 54558 629 chain 483168 chr14 107349540 + 25237368 25243205 L1PA7 6471 + 6 6460 7620 362 0 1 42 0 1 282 10 15 364 0 1 296 1 0 273 6 7 82 0 1 532 1 0 12 0 14 347 1 2 136 1 2 12 0 1 133 0 1 71 1 2 46 0 1 196 0 1 41 2 579 660 0 2 586 1 3 75 0 3 426 1 4 88 0 1 750 chain 11131 chr14 107349540 + 25248688 25248811 L1PA2 6032 - 5 128 155692 123 chain 11640 chr14 107349540 + 25251682 25251807 L1PA3long 6157 + 6032 6157 153740 125 chain 16860 chr14 107349540 + 25358595 25358780 L1PA3long 6157 + 5971 6157 135942 162 0 1 23 chain 2782 chr14 107349540 + 25373633 25373678 MADE1 96 + 50 96 228989 15 4 5 26 chain 29758 chr14 107349540 + 25400035 25400348 AluYb9 318 + 0 313 85621 313 chain 21843 chr14 107349540 + 25400349 25400599 L1PA5 6144 + 5891 6141 120842 250 chain 12723 chr14 107349540 + 25405832 25405977 L1PA7 6471 - 560 705 149357 145 chain 42196 chr14 107349540 + 25405977 25406493 L1PA7 6471 + 5942 6459 66399 374 8 9 134 chain 65609 chr14 107349540 + 25419968 25420775 L1PA7 6471 - 19 847 50290 128 10 13 13 2 1 74 0 1 404 1 17 101 0 2 74 chain 19919 chr14 107349540 + 25453214 25453455 AluSc 308 + 57 298 127403 241 chain 4218 chr14 107349540 + 25470683 25470731 MER21B 843 + 157 205 204318 48 chain 13406 chr14 107349540 + 25470754 25470990 L1MCb 1641 - 474 719 146685 93 1 0 16 13 17 35 24 29 19 1 2 34 chain 8968 chr14 107349540 + 25560719 25560818 L1PA4 6152 + 6053 6152 165781 99 chain 235481 chr14 107349540 + 25574674 25577571 L1PA7 6471 + 3559 6470 17000 277 1 0 201 0 1 8 3 2 92 8 7 191 0 1 146 0 1 36 0 2 96 0 1 369 13 12 489 0 1 67 0 4 51 0 3 50 2 1 5 0 1 226 3 0 7 4 3 4 0 1 136 0 4 61 0 1 191 1 2 146 1 2 12 chain 72905 chr14 107349540 + 25584463 25585320 L1PA7 6471 + 5612 6469 47066 88 0 2 756 2 0 11 chain 5082 chr14 107349540 + 25585757 25585831 MER4D 903 + 733 808 194264 35 5 6 34 chain 143302 chr14 107349540 + 25605633 25607437 L1P3 4156 + 3 1809 25594 248 2 1 68 1 0 39 0 1 472 1 0 92 13 14 37 1 0 23 0 1 395 0 3 412 chain 139083 chr14 107349540 + 25607441 25609092 L1PA7 6471 + 4804 6464 26280 819 1 6 71 0 2 595 17 19 148 chain 6753 chr14 107349540 + 25617949 25618080 L1MD1 2063 - 561 696 179303 41 5 7 18 14 18 25 2 0 26 chain 13914 chr14 107349540 + 25622546 25622794 L1MA5A 2387 - 84 292 144873 8 1 0 65 32 0 13 3 0 23 8 7 30 2 0 50 1 0 12 chain 523495 chr14 107349540 + 25636299 25642410 L1PA5 6144 + 0 6139 4809 119 1 15 12 23 9 323 0 1 554 1 0 7 0 8 893 13 27 345 2 1 248 1 2 122 35 36 960 12 11 938 0 5 1174 5 6 323 chain 538682 chr14 107349540 + 25652633 25658745 L1PA4 6152 + 6 6134 3043 1189 0 2 46 0 1 209 0 4 3020 19 17 142 0 5 663 0 5 508 0 1 316 chain 73518 chr14 107349540 + 25668581 25669657 MER11A 1151 - 5 1151 46777 148 16 17 60 0 1 36 18 0 22 8 15 11 25 1 148 12 15 133 0 1 90 19 24 35 0 1 4 1 0 90 4 0 66 1 0 74 0 99 55 chain 2725 chr14 107349540 + 25672854 25673387 L1PB1 5432 - 10 511 71328 18 1 0 13 1 0 21 1 0 24 2 0 14 12 9 15 15 6 6 2 0 12 10 9 38 20 18 51 22 16 6 1 0 7 2 1 24 3 0 9 1 2 182 chain 548368 chr14 107349540 + 25673430 25679769 L1PA2 6032 - 0 6032 1655 2633 309 0 1206 0 2 1935 1 0 183 1 2 71 chain 28673 chr14 107349540 + 25676070 25676372 AluYa5 310 - 8 310 90434 302 chain 1667 chr14 107349540 + 25680073 25680399 L1PB1 5432 - 511 839 71328 114 5 3 125 0 3 8 1 0 29 8 10 36 chain 86580 chr14 107349540 + 25696396 25697455 MER11B 1079 - 5 1060 40939 19 1 2 95 1 2 185 8 2 85 0 4 85 9 8 328 3 0 240 chain 22438 chr14 107349540 + 25698552 25698824 L1PA7 6471 - 2 274 118307 272 chain 4421 chr14 107349540 + 25707380 25707437 MER3 215 - 66 122 201681 4 1 0 52 chain 29952 chr14 107349540 + 25733361 25733815 L1PB2 3958 - 130 572 84961 53 1 0 26 2 0 26 0 1 6 6 5 32 1 0 62 1 0 81 1 0 35 6 5 18 1 0 27 4 2 10 2 0 53 chain 5685 chr14 107349540 + 25733815 25733909 L1PB 1623 - 1389 1482 185913 43 2 0 6 1 0 6 6 8 30 chain 33327 chr14 107349540 + 25750256 25750752 MLT2A1 477 - 9 477 78693 10 1 0 53 16 0 16 1 0 4 10 0 136 12 6 70 11 15 17 1 2 92 0 1 46 chain 432978 chr14 107349540 + 25750752 25756119 HERVL-int 5654 - 0 5654 9237 73 0 3 147 1 7 9 2 0 517 0 3 151 5 6 582 12 13 568 0 4 305 2 0 252 0 2 185 0 2 97 0 1 203 11 21 123 9 14 529 8 13 154 7 8 4 1 0 82 0 9 449 5 4 45 10 134 62 0 12 421 0 23 224 0 1 78 0 80 34 chain 26117 chr14 107349540 + 25756259 25756639 MLT2A1 477 - 92 477 99543 43 0 1 94 6 0 73 1 5 22 8 9 91 8 14 4 1 0 29 chain 30703 chr14 107349540 + 25778684 25779153 L1PB2 3958 + 3382 3838 83031 57 2 0 12 4 0 74 21 19 73 1 0 64 5 4 12 0 1 55 2 0 22 2 1 6 1 0 56 chain 38623 chr14 107349540 + 25784960 25785395 L1PA4 6152 - 12 447 71261 435 chain 51439 chr14 107349540 + 25793292 25793859 L1PA3long 6157 - 5 572 58013 567 chain 25966 chr14 107349540 + 25793859 25794135 L1PA3long 6157 + 5293 5569 100152 276 chain 135622 chr14 107349540 + 25796110 25797801 L1PA7 6471 - 10 1725 26906 837 0 3 124 1 0 4 0 1 28 23 4 81 1 6 426 1 0 119 1 0 4 1 38 40 chain 87721 chr14 107349540 + 25797801 25798892 L1PA7 6471 + 3649 4745 40421 237 0 3 73 11 10 509 12 11 172 0 4 77 chain 4513 chr14 107349540 + 25805045 25805101 L1MA4A 3247 + 2585 2641 200641 56 chain 268160 chr14 107349540 + 25806555 25809933 L1PA7 6471 - 2 3399 15281 11 0 2 452 0 1 300 4 3 79 1 0 21 0 1 71 0 7 502 0 1 39 1 0 308 0 8 93 8 9 61 0 2 664 2 0 44 0 1 73 9 7 161 0 4 47 1 0 205 1 3 102 7 0 87 0 4 24 chain 85853 chr14 107349540 + 25812821 25813904 MER11A 1151 - 0 1151 41214 66 1 0 166 1 59 54 2 1 115 1 0 8 6 9 114 1 0 16 0 7 95 0 1 51 0 1 83 0 11 41 1 0 75 8 0 178 chain 42028 chr14 107349540 + 25825177 25825697 MER41A 554 + 0 525 66586 469 10 15 41 chain 111756 chr14 107349540 + 25829588 25830825 L1PA4 6152 + 4914 6152 33739 983 0 1 254 chain 511272 chr14 107349540 + 25833983 25839880 L1PA5 6144 - 14 6144 6044 129 2 1 451 0 1 1179 7 0 676 0 229 18 0 2 37 6 10 1089 2 0 1284 0 1 585 7 8 130 4 9 291 chain 68309 chr14 107349540 + 25873880 25874628 L1PA3long 6157 - 0 748 49119 748 chain 26639 chr14 107349540 + 25892255 25892786 L1PA11 4918 - 290 784 97518 17 117 94 6 3 0 9 2 1 12 3 2 8 1 0 5 2 0 66 6 5 8 1 0 67 4 0 194 chain 60551 chr14 107349540 + 25892798 25893527 L1PA7 6471 - 14 749 52542 141 7 8 226 0 4 106 0 1 249 chain 76877 chr14 107349540 + 25893528 25902076 L1P3 4156 + 2956 4139 45043 141 11 15 361 7405 36 94 1 0 20 0 1 16 0 2 74 7 8 381 2 0 9 2 1 24 chain 12396 chr14 107349540 + 25895942 25896099 HERVH-int 3825 - 849 1005 150654 58 1 0 98 chain 30282 chr14 107349540 + 25909385 25909874 LTR12F 595 - 0 595 83987 242 55 71 42 36 124 12 0 1 77 0 1 25 chain 23372 chr14 107349540 + 25910159 25910544 MSTA 426 + 16 414 113796 117 1 0 5 18 22 43 16 17 10 18 27 157 chain 27768 chr14 107349540 + 25927142 25927535 MER48 407 + 7 407 93808 23 0 1 4 1 0 73 38 45 254 chain 3616 chr14 107349540 + 25928130 25928178 MER53 195 - 26 80 213402 31 0 6 17 chain 75136 chr14 107349540 + 25943337 25944164 L1PA4 6152 + 5327 6151 45953 574 3 0 250 chain 25488 chr14 107349540 + 25966916 25967210 AluY 311 + 10 304 102277 294 chain 29157 chr14 107349540 + 25984390 25984700 AluYa5 310 - 0 310 88275 310 chain 35265 chr14 107349540 + 25984700 25985171 THE1C-int 1605 - 1118 1604 75839 35 5 12 38 7 6 61 0 6 86 0 1 38 1 3 200 chain 21648 chr14 107349540 + 26005815 26006047 AluYa5 310 - 7 239 121581 232 chain 13003 chr14 107349540 + 26049799 26049953 L1PA6 6164 - 2 156 148236 154 chain 400776 chr14 107349540 + 26050258 26055538 L1P2 5180 - 8 5178 10063 36 1 0 26 0 1 22 1 0 386 1 2 345 0 4 43 1 0 120 1 0 137 2 1 136 0 2 220 1 0 79 9 7 446 0 1 244 0 12 323 0 4 557 6 7 685 7 8 5 1 0 515 0 15 42 21 0 175 53 0 4 23 0 21 0 5 21 1 0 69 19 0 36 26 25 28 39 33 7 21 0 66 13 12 45 1 0 33 12 11 148 chain 301685 chr14 107349540 + 26059729 26063437 L1PA7 6471 - 1 3728 13333 12 0 1 758 13 12 41 23 25 275 1 2 856 0 1 535 2 1 221 13 17 129 4 8 21 1 2 28 1 2 90 0 3 251 0 1 4 0 1 89 0 1 340 chain 8951 chr14 107349540 + 26068822 26069013 LTR12 884 + 62 264 165868 20 25 0 60 3 4 17 9 26 19 0 1 16 0 18 7 4 3 11 chain 10609 chr14 107349540 + 26096685 26096839 MER44A 345 + 60 220 157784 51 2 4 61 1 5 39 chain 117570 chr14 107349540 + 26115342 26117100 PABL_A-int 1935 - 73 1820 31937 7 1 0 15 5 4 107 23 21 102 1 0 60 5 0 20 1 0 11 2 0 82 0 4 50 0 6 190 5 0 7 0 6 80 5 3 102 9 8 91 2 1 19 0 1 7 4 7 190 0 2 41 25 23 182 38 27 7 0 6 31 6 4 199 13 11 13 chain 28690 chr14 107349540 + 26147140 26147456 AluYa5 310 - 0 310 90371 9 6 0 301 chain 68234 chr14 107349540 + 26149263 26150476 LTR12D 1347 - 0 1208 49144 258 0 97 85 0 3 163 2 3 20 3 20 44 0 2 32 0 4 36 39 0 13 0 31 63 154 0 131 6 42 20 89 86 55 chain 81579 chr14 107349540 + 26172755 26173676 L1PA3long 6157 - 15 938 42936 281 1 2 131 0 1 508 chain 11142 chr14 107349540 + 26183177 26183330 THE1B-int 1605 - 1449 1605 155666 28 12 15 113 chain 298435 chr14 107349540 + 26186745 26190383 L1PA6 6164 - 10 6164 13508 838 2 1 466 0 2 40 0 4 258 28 9 65 0 3 749 0 2011 262 0 1 4 2 0 166 0 1 21 1 2 344 0 4 285 17 528 90 chain 214705 chr14 107349540 + 26196318 26199039 L1PA7 6471 - 19 2751 18185 139 1 0 99 0 1 79 1 2 8 0 1 261 0 3 156 29 25 61 4 7 255 0 1 4 4 0 218 1 0 112 2 1 56 0 5 227 7 6 47 4 12 183 0 1 477 1 2 125 8 5 44 0 1 80 12 10 8 0 2 8 chain 55334 chr14 107349540 + 26200826 26201468 L1PA7 6471 - 14 657 55502 143 0 1 499 chain 95168 chr14 107349540 + 26206170 26207606 L1PA13 3608 + 2039 3444 38048 12 0 2 23 0 2 170 8 1 85 0 1 52 16 15 14 5 0 37 9 1 59 19 11 93 2 1 372 9 11 32 1 0 89 0 1 9 4 1 26 1 0 20 26 30 64 15 11 50 1 0 57 1 0 5 3 1 47 chain 25898 chr14 107349540 + 26214183 26214483 L1PA5 6144 - 449 746 100450 235 3 0 62 chain 30630 chr14 107349540 + 26214487 26214853 L1PA5 6144 + 5777 6144 83155 33 1 2 332 chain 550902 chr14 107349540 + 26240525 26246671 L1PA3long 6157 - 0 6157 1327 148 1 0 1497 0 1 216 0 2 1262 0 2 1983 1 0 674 0 2 51 0 6 313 chain 547093 chr14 107349540 + 26248069 26254078 L1PA2 6032 - 3 6024 1819 2740 0 5 979 0 3 1265 0 3 756 0 1 269 chain 5384 chr14 107349540 + 26256093 26256163 L1PB4 2604 - 32 101 191143 20 1 0 49 chain 41542 chr14 107349540 + 26261980 26262519 LTR5_Hs 974 - 0 553 67232 11 4 5 55 0 8 111 8 8 119 0 1 200 0 4 31 chain 48184 chr14 107349540 + 26276561 26277146 L1PA5 6144 + 5555 6142 60334 156 0 1 99 0 1 79 1 0 110 0 1 140 chain 56259 chr14 107349540 + 26283480 26284246 L1PA8 5853 + 5081 5845 54989 24 4 5 27 0 3 424 1 0 46 2 0 67 19 18 49 1 0 16 12 11 74 chain 530674 chr14 107349540 + 26321140 26327206 L1PA4 6152 - 1 6152 4119 150 7 0 103 1 0 596 0 4 490 3 0 94 3 0 356 0 4 185 3 4 53 8 33 1534 0 2 8 11 11 8 2 0 481 0 5 10 0 56 995 0 1 232 1 0 149 5 6 250 0 3 328 chain 27112 chr14 107349540 + 26373131 26373428 L1PA3long 6157 - 1 299 95896 146 0 1 151 chain 123060 chr14 107349540 + 26416781 26418128 L1PA3long 6157 + 4810 6157 30024 1347 chain 323173 chr14 107349540 + 26429476 26433054 L1PA3long 6157 - 0 3587 12473 371 0 1 471 0 4 555 7 4 473 0 8 111 1 0 1589 chain 519340 chr14 107349540 + 26448120 26454538 L1PA7 6471 + 61 6461 5230 154 1 0 52 11 4 139 1 2 49 1 0 535 1 0 272 19 18 473 1 0 150 3 4 222 2 0 5 2 3 358 0 2 16 0 2 120 10 4 407 0 1 221 1 2 36 2 0 180 8 5 32 7 2 13 0 4 288 10 0 170 1 2 660 0 4 942 0 3 832 1 2 10 chain 26256 chr14 107349540 + 26461023 26461362 THE1A 353 - 0 337 98992 46 7 6 191 1 0 94 chain 3029 chr14 107349540 + 26482663 26482695 L1MA3 4352 - 2114 2146 224385 32 chain 9935 chr14 107349540 + 26562625 26562750 MER85 139 - 0 135 160902 40 0 10 85 chain 535401 chr14 107349540 + 26575635 26581623 L1PA3long 6157 + 19 6153 3537 723 1 0 34 0 128 73 0 1 228 2 12 30 0 1 733 0 1 302 1 0 941 0 3 2081 0 4 839 chain 9954 chr14 107349540 + 26610885 26611035 MER30 238 + 58 233 160810 49 9 28 16 3 9 73 chain 84628 chr14 107349540 + 26684887 26685815 L1PA3long 6157 + 5228 6157 41674 833 0 1 95 chain 28321 chr14 107349540 + 26701618 26701918 AluYa5 310 + 0 299 91865 132 1 0 167 chain 20212 chr14 107349540 + 26714638 26714995 THE1C 375 - 20 375 126493 5 1 0 117 57 54 70 4 5 24 11 12 68 chain 62932 chr14 107349540 + 26729403 26730215 LTR17 781 + 0 781 51474 119 0 9 126 2 1 32 0 1 11 10 0 27 0 1 54 10 0 301 0 1 48 27 5 45 chain 4300 chr14 107349540 + 26738067 26738602 L1MD2 1676 - 379 898 203208 26 285 277 5 0 1 40 159 150 20 chain 55089 chr14 107349540 + 26741988 26742780 L1PA11 4918 + 3707 4502 55654 73 7 9 30 1 5 351 0 2 34 0 1 119 7 5 42 28 30 67 2 0 12 5 1 14 chain 66037 chr14 107349540 + 26764938 26765666 L1PA2 6032 - 5 731 50078 330 0 2 122 4 0 272 chain 376384 chr14 107349540 + 26765706 26769818 L1PA2 6032 + 1909 6031 10867 454 0 1 696 0 1 2866 0 8 96 chain 10400 chr14 107349540 + 26770450 26770573 MLT1A1 405 + 265 388 158697 123 chain 522829 chr14 107349540 + 26777823 26784268 L1PA7 6471 + 2 6467 4884 328 3 0 5 10 13 92 5 6 232 0 1 171 8 9 1189 0 3 74 1 18 498 2 0 248 0 4 196 7 11 5 0 1 88 9 7 283 15 13 33 0 1 67 5 4 164 10 11 138 1 0 127 6 7 1067 2 0 506 2 0 50 0 1 137 0 1 650 5 0 6 chain 12178 chr14 107349540 + 26804673 26804834 Tigger3a 397 + 139 310 151506 15 2 12 144 chain 22657 chr14 107349540 + 26815696 26816059 THE1B 368 - 0 368 117294 56 1 2 4 1 0 64 1 0 12 1 0 11 50 57 162 chain 29921 chr14 107349540 + 26853013 26853324 AluYb9 318 - 7 318 85043 311 chain 24570 chr14 107349540 + 26855557 26855830 AluY 311 + 28 302 107137 104 0 1 169 chain 8628 chr14 107349540 + 26904322 26904416 L1PA4 6152 - 0 94 167594 94 chain 23472 chr14 107349540 + 26945911 26946209 AluSp 311 - 1 300 113262 136 12 13 150 chain 141775 chr14 107349540 + 26964712 26966277 L1PA3long 6157 - 8 1577 25861 841 0 4 724 chain 28732 chr14 107349540 + 26966277 26966591 L1PA3long 6157 + 4270 4584 90198 314 chain 558209 chr14 107349540 + 27098474 27104505 L1PA2 6032 - 1 6032 481 6031 chain 519899 chr14 107349540 + 27109028 27115455 L1PA7 6471 - 2 6468 5174 236 1 2 257 3 0 346 8 7 267 4 1 442 0 1 146 0 1 4 2 12 240 0 3 746 0 3 57 10 14 146 7 4 430 0 4 468 5 1 107 0 4 709 2 1 178 0 2 68 0 1 138 0 1 26 0 3 125 1 0 15 0 3 516 0 9 317 1 4 30 6 7 194 6 7 163 chain 27064 chr14 107349540 + 27133984 27134340 THE1B 368 - 3 368 96062 77 0 1 89 6 0 27 1 0 112 0 15 44 chain 122157 chr14 107349540 + 27134340 27135887 THE1B-int 1605 - 0 1571 30328 19 0 1 138 8 7 984 1 26 133 1 0 263 chain 12909 chr14 107349540 + 27135936 27136092 THE1B 368 - 20 176 148597 156 chain 11876 chr14 107349540 + 27136117 27136266 THE1B 368 - 196 360 152719 117 0 15 32 chain 551569 chr14 107349540 + 27142521 27148580 L1PA2 6032 - 2 6032 1245 858 1 0 4777 28 0 395 chain 15556 chr14 107349540 + 27157134 27157310 L1P1 4361 - 1071 1247 139712 176 chain 130465 chr14 107349540 + 27157310 27158769 L1PA4 6152 + 4685 6151 27973 302 0 5 306 0 4 531 0 1 302 3 0 15 chain 48490 chr14 107349540 + 27164970 27165517 L1PA3long 6157 + 5593 6142 60119 312 1 3 234 chain 51362 chr14 107349540 + 27169777 27170542 MER4E1 777 - 0 777 58054 110 0 1 101 15 23 32 1 0 49 0 1 6 1 0 40 0 1 32 1 0 13 16 35 41 5 9 52 6 0 12 9 0 170 12 5 24 0 3 17 chain 7298 chr14 107349540 + 27170801 27170888 MLT1A 405 + 295 382 175458 87 chain 19450 chr14 107349540 + 27193426 27193914 L1PA15 4387 - 37 514 128821 12 16 11 14 12 6 17 0 1 19 20 17 25 12 11 16 4 0 16 2 1 34 15 25 21 55 54 25 8 10 82 1 0 41 3 1 18 chain 55850 chr14 107349540 + 27194981 27195594 L1PA3long 6157 - 421 1034 55213 613 chain 20002 chr14 107349540 + 27228434 27228821 THE1D 372 - 3 372 127140 24 3 0 149 20 23 39 83 65 69 chain 8408 chr14 107349540 + 27239167 27239275 L1PA16 3655 + 3437 3544 168801 6 1 0 101 chain 59219 chr14 107349540 + 27247110 27247793 L1PA7 6471 - 6 689 53270 683 chain 40944 chr14 107349540 + 27333282 27333755 L1PA5 6144 - 9 468 67981 263 14 0 196 chain 3507 chr14 107349540 + 27351674 27351791 MLT1A0 366 + 25 150 215257 8 1 0 14 1 2 13 48 56 32 chain 30343 chr14 107349540 + 27384060 27384562 MER1A 529 - 21 529 83803 37 17 14 12 3 6 88 0 10 49 1 2 176 0 1 16 64 58 39 chain 3898 chr14 107349540 + 27393629 27393722 Charlie4a 502 + 59 154 208891 21 36 38 36 chain 39159 chr14 107349540 + 27406073 27406675 MER4D0 881 + 272 881 70533 120 0 2 34 10 11 56 0 1 34 19 24 54 53 51 222 chain 85596 chr14 107349540 + 27411087 27412116 MER11C 1089 - 26 1089 41308 199 0 1 125 0 1 45 0 4 265 9 24 82 0 4 58 0 9 246 chain 92287 chr14 107349540 + 27418659 27419698 L1PA3long 6157 - 0 1043 38881 210 0 3 572 0 1 137 0 1 4 1 0 115 chain 38357 chr14 107349540 + 27419698 27420115 L1PA3long 6157 + 4685 5108 71518 234 0 6 183 chain 20794 chr14 107349540 + 27473984 27474297 MER1B 344 + 59 344 124630 204 42 14 67 chain 4704 chr14 107349540 + 27496977 27497063 MER30 238 - 88 188 198474 14 1 26 14 11 0 46 chain 98340 chr14 107349540 + 27513242 27514318 L1PA3long 6157 - 3031 4108 37147 466 0 1 610 chain 269785 chr14 107349540 + 27514318 27517313 L1PA3long 6157 + 3151 6157 15192 1721 0 1 310 0 5 96 1 5 718 0 1 149 chain 211290 chr14 107349540 + 27521429 27523935 L1PA7 6471 + 3439 6466 18415 110 9 13 808 0 1 358 0 5 537 0 1 24 0 510 660 chain 11686 chr14 107349540 + 27525140 27525272 L1PA4 6152 - 211 343 153533 132 chain 8154 chr14 107349540 + 27527337 27527467 MLT1A0 366 + 4 146 170203 21 4 5 44 6 17 55 chain 24679 chr14 107349540 + 27530244 27530537 L1PA6 6164 - 13 307 106555 263 0 1 30 chain 34718 chr14 107349540 + 27551851 27552525 L1PA15 4387 - 77 728 76598 40 19 17 36 4 3 7 4 0 22 5 4 22 1 0 29 6 5 15 11 10 52 24 15 73 4 2 25 1 0 43 2 0 63 1 0 4 31 24 9 1 0 37 1 2 7 0 11 68 1 0 6 chain 51100 chr14 107349540 + 27572506 27573085 L1PA5 6144 - 9 588 58251 579 chain 336145 chr14 107349540 + 27587419 27591673 HERVL-int 5654 - 0 5651 11993 904 0 1 474 3 0 105 1 2 217 9 10 134 6 12 268 0 127 62 6 10 632 11 12 106 33 5 404 1 0 56 0 1 78 2 1 4 0 1 467 14 1306 239 5 0 13 chain 31328 chr14 107349540 + 27591673 27592131 MLT2A1 477 - 3 475 81942 45 9 0 12 0 34 46 0 7 67 0 1 55 30 12 20 10 7 150 0 2 14 chain 260485 chr14 107349540 + 27637534 27640419 L1PA3long 6157 + 3279 6157 15670 1604 8 1 1273 chain 73142 chr14 107349540 + 27662034 27662834 L1PA3long 6157 - 8 808 46952 800 chain 24984 chr14 107349540 + 27676041 27676400 THE1A 353 + 0 353 104890 109 19 18 71 1 0 59 4 0 96 chain 102671 chr14 107349540 + 27693487 27694640 L1P1 4361 + 2498 3652 36084 132 2 0 123 1 0 4 0 1 25 0 2 417 0 1 449 chain 25754 chr14 107349540 + 27700334 27700693 THE1B 368 + 0 368 101066 169 1 0 29 35 45 125 chain 116901 chr14 107349540 + 27708996 27710327 L1PA4 6152 + 4806 6140 32159 578 1 0 606 6 9 39 0 1 101 chain 112094 chr14 107349540 + 27717420 27718811 L1PA7 6471 - 5 1411 33638 302 0 1 190 0 1 52 0 1 201 4 13 138 0 1 23 0 1 249 0 1 232 chain 122488 chr14 107349540 + 27718839 27720381 L1PA7 6471 + 3574 5064 30225 255 4 0 34 0 1 136 0 1 190 52 16 7 14 0 63 0 2 256 1 6 190 2 0 218 5 0 115 chain 148301 chr14 107349540 + 27733318 27734972 L1PA3long 6157 + 4499 6153 24842 58 6 1 752 0 4 825 0 1 13 chain 2630 chr14 107349540 + 27808649 27808713 L1MD3 1191 - 1040 1103 231270 17 22 21 25 chain 11977 chr14 107349540 + 27810986 27811278 THE1B 368 + 0 300 152297 15 2 0 32 29 35 87 1 0 21 76 81 29 chain 523912 chr14 107349540 + 27826750 27832861 L1PA5 6144 - 4 6141 4775 5 2 0 758 1 0 83 1 0 870 7 9 516 0 3 213 3 1 147 26 27 519 0 1 619 0 1 416 0 24 215 5 4 1129 1 2 575 chain 4095 chr14 107349540 + 27878251 27878301 MLT2A2 560 - 0 54 206017 6 0 4 44 chain 5108 chr14 107349540 + 27889365 27889420 HERV17-int 4347 + 2313 2368 194000 55 chain 10529 chr14 107349540 + 27889854 27889994 THE1C-int 1605 - 1407 1604 158136 21 0 55 102 0 2 17 chain 37517 chr14 107349540 + 27896840 27897430 LTR43 600 + 0 600 72793 14 67 80 68 2 0 25 3 2 34 5 6 115 0 1 97 2 0 158 chain 237460 chr14 107349540 + 27928164 27930727 L1PA2 6032 - 0 2562 16911 549 1 0 2013 chain 90156 chr14 107349540 + 27930727 27931705 L1PA2 6032 + 2489 3467 39421 978 chain 37258 chr14 107349540 + 27959588 27960138 MLT2A2 560 + 0 560 73161 129 0 2 37 13 12 228 0 11 23 24 19 36 17 20 43 chain 147755 chr14 107349540 + 27961617 27963345 L1PA5 6144 - 2 1727 24914 7 4 0 145 0 1 7 13 13 825 0 1 605 1 2 42 2 0 77 chain 6103 chr14 107349540 + 27980520 27980591 L1P4 1494 - 1229 1300 184387 71 chain 21653 chr14 107349540 + 28065520 28065776 L1PA4 6152 - 0 256 121559 256 chain 40122 chr14 107349540 + 28073189 28073708 MER41A 554 - 20 540 69150 233 9 1 103 0 10 22 1 0 151 chain 48030 chr14 107349540 + 28081490 28082078 LTR66 600 + 0 591 60458 404 3 9 73 3 0 105 chain 22655 chr14 107349540 + 28110148 28110419 L1PA7 6471 - 9 281 117302 152 1 2 118 chain 20084 chr14 107349540 + 28116692 28116916 L1PA2 6032 + 5797 6028 126875 83 2 9 139 chain 26216 chr14 107349540 + 28117953 28118300 L1PA8 5853 - 1030 1377 98544 96 4 5 43 1 0 16 0 1 64 18 17 105 chain 76762 chr14 107349540 + 28118300 28119337 L1PA8 5853 + 4823 5853 45101 182 5 4 120 0 1 246 0 1 187 1 0 44 2 0 30 1 2 38 29 14 8 0 11 33 1 0 16 9 8 85 chain 78289 chr14 107349540 + 28133100 28133998 L1PA5 6144 - 0 899 44379 113 1 0 70 0 1 4 1 0 199 0 2 510 chain 536975 chr14 107349540 + 28142270 28148298 L1PA3long 6157 + 4 6157 3314 148 6 7 582 0 1 15 2 0 11 10 138 197 8 1 345 10 14 120 0 1 1112 0 1 1517 1 0 774 0 1 125 1 0 1023 1 0 20 chain 7614 chr14 107349540 + 28206440 28206526 L1PA8 5853 - 0 86 173451 86 chain 3296 chr14 107349540 + 28220634 28220676 L1MCa 1829 + 1062 1104 219058 42 chain 23532 chr14 107349540 + 28222369 28222656 AluY 311 + 25 311 112949 147 6 5 134 chain 86597 chr14 107349540 + 28239090 28240756 L1PB1 5432 + 4140 5420 40930 30 1 0 101 0 1 47 333 20 82 0 1 221 5 6 40 1 0 76 2 0 338 56 14 17 1 0 13 19 14 6 2 0 53 2 1 16 2 1 43 1 0 15 3 0 6 16 6 9 0 2 8 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 40789 chr14 107349540 + 28248341 28248797 L1PA2 6032 + 5576 6032 68188 6 0 1 298 0 1 137 2 0 13 chain 6945 chr14 107349540 + 28251053 28251133 MER45C 884 + 88 168 177863 80 chain 19544 chr14 107349540 + 28273099 28273425 THE1B 368 + 14 368 128532 30 0 15 80 12 16 14 1 0 29 44 54 116 chain 32151 chr14 107349540 + 28273425 28273831 THE1B-int 1605 + 0 403 80610 15 0 2 10 5 0 376 chain 21064 chr14 107349540 + 28275407 28275751 THE1B 368 + 0 368 123678 45 13 28 96 1 0 29 47 57 113 chain 22983 chr14 107349540 + 28279632 28279948 AluY 311 + 7 289 115699 95 0 1 20 0 6 89 41 0 71 chain 108697 chr14 107349540 + 28289349 28290685 L1P3 4156 - 200 1518 34512 36 0 3 83 3 1 1059 49 30 106 chain 96019 chr14 107349540 + 28290685 28292280 L1PA7 6471 + 5065 6324 37744 178 0 1 44 1 0 58 0 1 86 0 3 5 0 3 179 6 0 87 19 22 18 342 0 308 1 2 76 0 1 187 chain 29539 chr14 107349540 + 28291375 28291702 L1PA4 6152 + 5817 6143 86482 95 1 0 231 chain 3455 chr14 107349540 + 28315232 28315272 LTR12C 1709 + 837 877 216107 40 chain 46326 chr14 107349540 + 28348084 28348683 L1PA8 5853 - 0 597 61751 92 4 3 17 2 1 9 0 4 38 1 0 11 1 0 69 2 0 47 1 0 287 0 1 18 chain 97806 chr14 107349540 + 28360044 28361461 L1PB1 5432 + 4012 5409 37332 190 7 8 249 8 16 124 6 10 12 0 2 480 1 2 11 9 0 22 20 20 11 2 0 51 2 1 16 1 0 44 1 0 13 28 14 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 5 chain 15112 chr14 107349540 + 28372615 28372784 L1PA4 6152 - 9 178 141004 169 chain 114682 chr14 107349540 + 28377278 28378728 L1PA8 5853 + 4409 5853 32888 267 5 1 330 0 2 512 0 3 40 2 1 45 2 0 72 1 0 5 17 16 37 2 1 19 1 0 93 chain 102533 chr14 107349540 + 28388718 28389886 L1PA5 6144 - 41 1209 36123 57 0 1 154 1 0 956 chain 70070 chr14 107349540 + 28389886 28390656 L1PA5 6144 + 4191 4962 48289 500 0 1 270 chain 409888 chr14 107349540 + 28408170 28413259 L1PA6 6164 + 1 6160 9804 588 6 13 187 0 17 838 0 1 169 1 2 277 1 2 125 0 1083 49 17 5 334 22 10 666 1 5 498 0 1 245 1 0 75 27 1 127 3 0 344 1 2 4 1 0 450 3 12 29 chain 209168 chr14 107349540 + 28435223 28437843 L1PA7 6471 - 2 2606 18554 8 9 0 150 13 14 165 0 1 166 6 0 110 1 2 151 1 0 8 0 1 72 1 0 138 0 1 185 0 1 34 1 0 312 8 3 8 0 1 886 1 0 4 0 1 182 chain 167628 chr14 107349540 + 28437843 28439963 L1PA7 6471 + 1755 3879 22290 67 0 1 11 0 2 267 7 0 170 0 1 78 0 3 281 1 2 56 0 1 4 7 5 624 0 1 35 1 0 140 1 2 57 0 1 21 10 12 282 chain 29915 chr14 107349540 + 28445137 28445512 L1PA4 6152 - 0 361 85054 9 27 0 328 0 13 11 chain 29292 chr14 107349540 + 28453871 28454186 AluYb8 318 + 0 317 87614 281 0 2 34 chain 27843 chr14 107349540 + 28471265 28471669 L1PA8 5853 - 0 403 93550 93 1 0 17 1 0 35 3 0 5 11 17 7 1 0 19 1 2 50 2 0 36 0 3 6 4 0 47 0 1 65 chain 18590 chr14 107349540 + 28481579 28481825 MER4A1 472 + 209 471 131261 76 3 16 22 0 1 74 0 2 71 chain 123408 chr14 107349540 + 28503749 28505479 L1PA11 4918 + 2858 4567 29914 26 2 1 32 2 1 85 14 7 186 0 1 32 0 5 461 7 8 370 0 1 134 2 0 122 8 9 54 2 1 13 2 0 68 2 0 12 2 1 20 23 14 11 9 6 14 2 1 13 chain 2911 chr14 107349540 + 28507635 28507670 tRNA-Leu-CTG 83 + 0 36 226863 21 0 1 14 chain 88594 chr14 107349540 + 28510558 28511616 L1PA7 6471 + 5407 6470 40148 215 3 0 180 0 1 486 1 0 75 0 8 98 chain 80637 chr14 107349540 + 28525204 28526156 L1PA5 6144 - 9 966 43327 89 4 0 110 0 9 749 chain 88048 chr14 107349540 + 28542833 28543849 L1PA5 6144 - 10 1034 40224 93 0 5 151 1 0 590 0 4 181 chain 90038 chr14 107349540 + 28543849 28544863 L1PA5 6144 + 4081 5095 39638 110 0 1 120 1 0 783 chain 3749 chr14 107349540 + 28574526 28574573 MADE1 96 + 48 95 211149 47 chain 15320 chr14 107349540 + 28584642 28584851 MSTA 426 - 225 426 140425 62 0 1 14 0 4 16 14 1 103 chain 102732 chr14 107349540 + 28617096 28618221 L1PA3long 6157 - 778 1904 36073 67 0 1 1058 chain 72946 chr14 107349540 + 28618221 28619013 L1PA3long 6157 + 5365 6157 46958 792 chain 501405 chr14 107349540 + 28637204 28643343 L1PA6 6164 + 0 6161 6761 184 5 12 40 0 2 279 0 2 48 1 0 106 0 2 112 0 17 98 1 5 229 0 1 11 0 3 418 0 2 368 0 4 376 7 6 214 4 1 198 4 3 4 0 1 439 24 11 13 0 1 319 0 1 92 1 0 394 15 0 1040 2 1 234 0 4 5 4 0 17 0 7 523 0 5 85 4 5 73 0 1 138 3 0 7 chain 138206 chr14 107349540 + 28647245 28648745 L1PA2 6032 - 428 1928 26453 1500 chain 38957 chr14 107349540 + 28648747 28649166 L1PA2 6032 + 5613 6032 70794 419 chain 80388 chr14 107349540 + 28654674 28656008 MER41-int 2638 + 1264 2622 43435 35 27 24 22 1 6 29 0 5 74 0 2 85 0 2 22 0 1 56 11 10 33 1 0 41 0 1 96 3 1 38 2 0 4 4 0 21 22 53 39 0 5 6 36 15 100 5 6 346 38 39 41 66 70 30 chain 554207 chr14 107349540 + 28657648 28663676 L1PA2 6032 + 2 6031 925 1033 0 2 281 1 0 4713 chain 26697 chr14 107349540 + 28678371 28678725 THE1B 368 + 0 356 97333 37 0 5 130 14 13 32 2 0 139 chain 21220 chr14 107349540 + 28698926 28699243 THE1A 353 - 27 353 123144 86 0 9 97 17 15 6 0 2 17 1 0 39 6 7 48 chain 24205 chr14 107349540 + 28708887 28709230 THE1B 368 + 13 366 109182 185 1 0 4 30 41 123 chain 20409 chr14 107349540 + 28742467 28742746 THE1B-int 1605 - 1326 1605 125865 135 5 6 15 5 4 119 chain 28735 chr14 107349540 + 28747030 28747337 AluYa5 310 + 0 306 90187 132 1 0 174 chain 20224 chr14 107349540 + 28771836 28772213 L1P4 1494 + 876 1172 126453 12 5 6 49 0 2 187 5 4 26 83 0 10 chain 7064 chr14 107349540 + 28775758 28775842 L1PB4 2604 - 74 158 176990 84 chain 3845 chr14 107349540 + 28776106 28776152 L1PB4 2604 + 2163 2209 209709 46 chain 546789 chr14 107349540 + 28781708 28787729 L1PA2 6032 - 0 6026 1854 140 8 1 2759 1 0 555 0 5 1539 0 2 316 0 7 451 1 0 184 0 1 7 1 0 59 chain 131469 chr14 107349540 + 28800335 28801775 L1PA3long 6157 + 4712 6157 27760 355 0 1 242 0 4 843 chain 12750 chr14 107349540 + 28842146 28842385 L1MA3 4352 + 4123 4349 149251 113 4 0 24 2 0 5 19 18 4 1 0 28 1 0 9 10 6 19 chain 57232 chr14 107349540 + 28857280 28858018 MER4E1 777 - 10 777 54381 216 3 9 108 0 1 81 0 19 59 1 0 93 0 1 6 0 1 141 5 7 25 chain 65850 chr14 107349540 + 28871445 28872159 L1HS 6032 - 1 713 50168 240 2 0 472 chain 27950 chr14 107349540 + 28879942 28880293 LTR3A 482 + 26 389 93164 195 0 13 31 1 0 124 chain 118264 chr14 107349540 + 28882085 28883405 L1PA3long 6157 - 1 1323 31632 4 1 0 840 1 5 293 1 0 180 chain 139090 chr14 107349540 + 28883405 28884932 L1PA3long 6157 + 3297 4825 26278 398 1 0 75 0 1 402 0 1 651 chain 28464 chr14 107349540 + 28889705 28890387 LTR3A 482 + 27 394 91322 47 0 4 187 1 0 30 319 0 94 0 1 4 chain 44465 chr14 107349540 + 28901347 28901897 L1PA6 6164 + 5610 6162 63619 392 8 9 6 1 0 96 0 1 36 0 1 11 chain 87991 chr14 107349540 + 28903876 28904891 MER11C 1089 + 0 1069 40378 523 0 20 48 0 34 444 chain 23565 chr14 107349540 + 28932652 28933023 THE1D 372 - 0 372 112771 32 1 0 112 58 59 6 0 1 162 chain 31254 chr14 107349540 + 28946547 28946985 L1PA8 5853 - 2 424 82073 82 10 9 19 2 1 52 10 0 9 5 4 65 2 0 46 1 0 135 chain 212109 chr14 107349540 + 28975335 28978384 L1P2 5180 - 2 2745 18351 4 1 0 37 4 3 47 1 0 81 0 4 67 0 1 1091 1 0 4 0 2 7 17 34 45 0 1 493 0 1 14 6 10 23 1 0 368 338 0 17 1 0 32 0 6 265 0 2 84 chain 9038 chr14 107349540 + 28998981 28999086 L1PA4 6152 - 13 118 165396 105 chain 10470 chr14 107349540 + 28999086 28999203 L1PA4 6152 + 5866 5983 158385 117 chain 122586 chr14 107349540 + 29013613 29014937 L1PA2 6032 - 4 1329 30196 777 0 1 547 chain 55011 chr14 107349540 + 29014937 29015536 L1PA2 6032 + 4122 4721 55531 599 chain 79949 chr14 107349540 + 29055964 29056889 L1PA6 6164 + 5226 6162 43620 81 0 1 4 2 3 263 0 10 409 1 0 165 chain 39081 chr14 107349540 + 29059749 29060292 MLT2A2 560 + 0 560 70631 14 1 5 133 2 0 41 2 5 110 5 6 85 4 15 146 chain 22218 chr14 107349540 + 29070916 29071205 AluY 311 + 10 302 119269 122 0 1 134 13 15 20 chain 30262 chr14 107349540 + 29085020 29085425 L1PA8 5853 - 0 402 84027 93 1 0 19 2 1 7 0 4 41 2 1 5 1 0 72 4 2 44 1 0 113 chain 440970 chr14 107349540 + 29104887 29111000 L1PA7 6471 - 14 6466 9025 148 1 0 607 17 16 65 1 0 621 0 1 153 0 4 355 15 14 97 7 8 733 0 3 5 6 3 381 4 0 6 8 12 592 3 4 264 0 1 73 5 8 788 4 13 15 10 16 88 0 2 5 9 7 51 27 52 104 32 15 60 57 78 35 85 161 29 2 0 6 6 8 13 11 20 50 0 19 38 28 28 15 148 346 73 26 12 131 chain 94710 chr14 107349540 + 29111006 29112143 L1P3 4156 - 536 1680 38164 101 0 1 18 1 0 17 0 1 385 7 11 447 4 6 157 chain 11074 chr14 107349540 + 29112144 29112275 L1PA7 6471 - 6340 6471 155915 131 chain 121937 chr14 107349540 + 29152564 29154128 THE1A-int 1579 + 0 1579 30400 24 0 1 281 1 2 194 2 1 80 0 1 102 0 7 160 0 1 225 1 5 137 24 25 333 chain 29648 chr14 107349540 + 29261496 29261804 AluYb8 318 + 0 308 86077 308 chain 3012 chr14 107349540 + 29289097 29289133 L1MC3 1789 + 1337 1373 224769 36 chain 24737 chr14 107349540 + 29293602 29293910 AluSc5 308 - 2 307 106237 5 3 0 300 chain 4345 chr14 107349540 + 29308965 29309022 L1MEb 951 + 226 300 202657 48 0 17 9 chain 69555 chr14 107349540 + 29311620 29312492 LTR12 884 + 0 884 48585 25 10 9 109 1 15 218 2 0 41 0 1 34 1 0 305 0 1 126 chain 450161 chr14 107349540 + 29315169 29320576 L1PA6 6164 + 0 6162 8764 22 1 14 7 13 0 45 0 735 497 0 4 889 1 3 118 1 0 65 0 4 161 2 0 609 1 0 22 7 8 76 0 5 50 1 0 193 1 0 333 0 1 288 5 6 201 6 10 949 0 3 82 1 2 760 chain 21749 chr14 107349540 + 29327986 29328272 AluSc 308 - 17 300 121210 12 5 1 72 5 6 192 chain 95593 chr14 107349540 + 29334010 29335297 L1PA7 6471 - 2 1252 37934 515 41 0 108 7 8 139 0 2 61 1 0 13 9 0 54 5 26 19 8 1 30 3 1 134 5 4 135 chain 88477 chr14 107349540 + 29376306 29377380 L1PA7 6471 - 991 2065 40195 306 0 1 690 1 0 77 chain 77909 chr14 107349540 + 29377380 29378684 L1PA7 6471 + 5485 6469 44413 35 0 1 100 1 0 22 1 8 42 0 1 108 337 0 36 15 16 497 0 6 99 0 2 11 chain 30213 chr14 107349540 + 29387161 29387533 L1PA6 6164 + 5791 6161 84155 174 0 1 186 3 0 9 chain 183779 chr14 107349540 + 29407120 29409253 L1PA6 6164 - 2 2148 20609 791 0 5 46 1 5 115 6 10 1174 chain 33285 chr14 107349540 + 29415541 29416068 L1MA3 4352 - 26 522 78752 12 6 5 17 12 10 24 2 0 146 48 22 260 chain 20969 chr14 107349540 + 29419578 29419829 L1PA10 4194 - 82 333 124037 36 2 0 14 0 2 199 chain 14145 chr14 107349540 + 29419842 29420027 L1PA10 4194 + 3664 3852 144054 118 4 7 63 chain 13766 chr14 107349540 + 29421052 29421211 L1PA4 6152 + 5993 6152 145378 159 chain 348249 chr14 107349540 + 29425062 29429475 L1PA7 6471 + 1956 6470 11658 146 0 2 131 6 7 23 1 0 118 0 1 41 1 0 148 0 2 45 0 1 10 0 1 74 4 8 16 0 77 86 11 7 651 0 4 15 0 4 171 5 6 480 0 2 5 2 1 220 3 4 189 0 2 297 1 0 206 6 0 6 0 6 287 3 5 12 5 6 97 0 7 6 7 0 32 1 0 99 1 0 276 0 1 236 0 4 5 0 1 75 5 6 135 2 0 11 chain 15233 chr14 107349540 + 29430606 29430790 L1PA5 6144 - 16 203 140681 122 4 0 7 2 9 49 chain 3259 chr14 107349540 + 29446418 29446505 MLT1D 503 + 281 370 219790 31 6 0 7 25 32 8 0 1 10 chain 53576 chr14 107349540 + 29450859 29451540 L1PREC2 3366 + 1832 2528 56624 136 1 2 13 0 3 405 0 11 126 chain 64887 chr14 107349540 + 29462430 29463163 L1PA4 6152 - 9 740 50616 547 4 1 107 0 1 75 chain 63793 chr14 107349540 + 29463163 29463902 L1P1 4361 + 3602 4341 51101 73 0 3 473 1 0 154 1 0 23 2 1 12 chain 128891 chr14 107349540 + 29471039 29472454 L1PA3long 6157 - 2182 3598 28336 1286 0 1 129 chain 195994 chr14 107349540 + 29472454 29474635 L1PA3long 6157 + 3977 6157 19500 71 0 1 2087 1 0 4 1 0 17 chain 24470 chr14 107349540 + 29484718 29485066 L1PA11 4918 - 388 720 107707 8 2 0 5 3 0 9 4 0 20 1 0 13 3 1 67 2 0 13 2 1 68 1 0 127 chain 460956 chr14 107349540 + 29491315 29498708 L1PA7 6471 - 3 6466 8363 9 5 0 141 6 4 179 4 0 327 1309 0 250 16 15 343 55 40 324 0 8 26 5 1 124 0 8 193 0 3 116 4 56 122 2 1 252 3 1 4 0 1 7 0 1 83 5 2 67 0 1 54 0 1 151 0 4 58 1 2 235 19 18 595 5 4 119 5 4 25 0 1 387 13 12 396 0 1 194 0 3 16 5 1 47 0 1 96 2 1 54 19 22 415 0 7 8 3 0 86 0 2 80 0 1 7 1 0 230 4 334 82 chain 107017 chr14 107349540 + 29492041 29493295 L1PA5 6144 - 1 1284 34875 182 1 0 5 1 2 410 0 19 56 0 2 230 0 9 364 1 0 4 chain 30655 chr14 107349540 + 29590582 29590953 L1PA5 6144 + 5768 6142 83109 76 0 1 35 4 5 7 0 1 249 chain 41731 chr14 107349540 + 29601132 29601719 L1PA8 5853 + 5277 5853 66986 33 0 1 80 9 8 138 4 0 27 1 0 38 12 10 67 1 0 9 1 0 52 2 1 24 10 9 79 chain 142170 chr14 107349540 + 29602748 29604535 L1PA7 6471 - 1058 2852 25788 537 10 16 185 0 4 78 5 6 101 0 1 112 1 0 5 0 1 244 10 7 67 10 11 199 8 3 99 0 1 94 0 1 22 chain 84659 chr14 107349540 + 29604535 29605590 L1PA7 6471 + 5402 6465 41652 97 10 11 104 0 3 19 4 5 61 2 0 282 3 7 97 0 1 47 0 1 119 2 0 86 0 1 122 chain 54761 chr14 107349540 + 29619894 29620582 LTR12_ 688 + 0 688 55865 688 chain 27980 chr14 107349540 + 29640030 29640401 MLT2A1 477 + 0 384 93073 15 0 1 46 7 22 86 4 1 10 0 1 22 0 1 171 2 0 8 chain 401928 chr14 107349540 + 29640487 29645445 HERVL-int 5654 + 10 5654 10028 143 0 1 238 0 642 246 0 1 115 0 1 333 7 11 329 0 9 46 0 1 278 0 4 411 0 1 533 7 0 16 0 8 470 0 2 75 0 1 111 11 20 297 3 4 101 9 10 477 0 1 418 0 3 211 0 3 73 chain 33169 chr14 107349540 + 29645445 29645936 MLT2A1 477 + 0 477 78955 66 0 2 101 4 1 12 1 2 19 1 2 180 25 21 8 13 0 23 1 3 37 chain 58010 chr14 107349540 + 29655745 29656489 LTR12 884 + 0 880 53968 25 1 0 30 0 41 235 0 47 43 19 60 266 0 8 125 chain 23419 chr14 107349540 + 29677493 29677806 L1PA7 6471 - 1 309 113547 31 6 7 73 3 0 44 2 0 137 2 1 15 chain 4385 chr14 107349540 + 29717439 29717492 L1MC1 2226 - 1963 2016 202136 53 chain 175256 chr14 107349540 + 29719416 29721359 L1PA3long 6157 + 4212 6157 21427 335 0 1 361 0 1 1247 chain 22217 chr14 107349540 + 29728121 29728356 L1HS 6032 - 1 236 119274 235 chain 42286 chr14 107349540 + 29728356 29728807 L1HS 6032 + 5318 5769 66289 451 chain 166157 chr14 107349540 + 29753168 29755607 L1PA5 6144 + 4188 6141 22498 307 2 1 38 0 3 90 1 0 348 0 1 194 494 0 181 0 8 180 2 3 459 0 1 133 4 0 6 chain 33887 chr14 107349540 + 29754160 29754545 L1P1 4361 - 1354 1739 77796 385 chain 8698 chr14 107349540 + 29754545 29754640 L1PA3long 6157 + 6062 6157 167211 95 chain 41481 chr14 107349540 + 29798203 29798715 L1PA7 6471 - 541 1055 67306 303 0 1 5 1 0 10 0 1 62 0 1 119 1 0 5 0 1 6 chain 41958 chr14 107349540 + 29798718 29799234 L1PA7 6471 + 5949 6468 66676 94 6 4 268 0 1 35 0 7 102 3 0 8 chain 5671 chr14 107349540 + 29802603 29802669 L1PA4 6152 - 1710 1776 185087 66 chain 147926 chr14 107349540 + 29802669 29804354 L1PA4 6152 + 4448 6143 24886 29 1 5 1509 1 6 11 8 9 126 chain 9396 chr14 107349540 + 29871208 29871375 Tigger3a 397 - 112 359 163582 88 44 124 35 chain 19891 chr14 107349540 + 29877887 29878254 THE1D 372 + 9 372 127514 47 9 19 32 0 1 27 0 4 49 22 20 5 1 0 9 18 18 34 1 2 7 16 0 37 0 1 18 2 0 33 chain 163956 chr14 107349540 + 29881100 29882961 L1PA5 6144 - 5 1870 22812 107 1 0 1104 0 1 582 0 4 67 chain 114251 chr14 107349540 + 29882962 29884343 L1P1 4361 + 8 1385 33010 243 5 2 477 1 0 655 chain 32311 chr14 107349540 + 29906905 29907285 L1PA7 6471 - 2 384 80349 11 0 2 369 chain 2738 chr14 107349540 + 29937180 29937233 MER94 134 + 79 133 229639 27 12 13 14 chain 309487 chr14 107349540 + 29947346 29950716 L1PA2 6032 - 4 3366 13023 7 4 0 143 0 5 7 5 0 2796 4 0 404 chain 25794 chr14 107349540 + 29952228 29952522 AluSp 311 - 16 310 100897 294 chain 78255 chr14 107349540 + 29975626 29976709 MER11A 1151 - 0 1151 44389 42 2 1 23 1 0 70 10 9 112 3 60 19 0 1 67 0 4 37 3 4 11 15 18 347 0 2 30 8 5 90 2 0 112 0 8 79 chain 22671 chr14 107349540 + 29999164 29999451 AluSg7 307 - 21 307 117209 159 5 4 123 chain 133530 chr14 107349540 + 30089056 30090556 L1PA3long 6157 + 4672 6155 27313 438 1 0 689 15 0 24 0 1 80 3 1 250 chain 3144 chr14 107349540 + 30125096 30125131 L1PA6 6164 + 6125 6160 222078 35 chain 3952 chr14 107349540 + 30129589 30129641 MER20 218 - 8 82 208109 42 0 22 10 chain 5731 chr14 107349540 + 30135152 30135235 L1PB3 3668 - 190 275 187826 40 8 10 35 chain 54782 chr14 107349540 + 30144715 30145330 L1PA5 6144 + 5514 6139 55854 556 0 10 59 chain 5871 chr14 107349540 + 30174507 30174608 MADE1 96 - 1 96 186464 34 20 14 47 chain 68723 chr14 107349540 + 30183503 30184321 L1PA7 6471 + 5646 6464 48933 54 0 2 6 5 6 574 1 0 171 2 0 5 chain 21031 chr14 107349540 + 30187348 30187709 THE1D 372 + 0 372 123808 62 30 40 62 46 47 66 0 1 62 1 0 32 chain 3061 chr14 107349540 + 30189446 30189484 MIR 256 - 113 151 223789 38 chain 75459 chr14 107349540 + 30196097 30196933 L1PA3long 6157 - 491 1332 45790 352 0 4 153 0 1 331 chain 38861 chr14 107349540 + 30196945 30197376 L1PA3long 6157 + 5726 6157 70931 431 chain 30558 chr14 107349540 + 30206246 30206564 AluYb9 318 + 0 318 83323 318 chain 531351 chr14 107349540 + 30244373 30250490 L1PA5 6144 + 0 6129 4036 348 0 1 660 1 0 4 0 1 423 0 1 656 0 1 885 4 12 222 1 0 77 1 0 4 1 2 384 1 2 449 0 1 1996 chain 18266 chr14 107349540 + 30254835 30255038 L1PA3long 6157 + 5954 6157 132166 203 chain 24017 chr14 107349540 + 30259213 30259524 AluSc 308 - 6 304 110230 268 14 1 29 chain 24862 chr14 107349540 + 30270901 30271193 AluSp 311 - 18 311 105561 11 0 1 281 chain 14246 chr14 107349540 + 30296083 30296418 L1PB1 5432 + 5114 5418 143736 24 1 0 9 1 0 11 8 4 5 2 0 53 2 1 15 1 0 44 1 0 9 31 19 13 19 16 9 2 0 20 12 11 14 1 0 13 1 0 14 chain 27357 chr14 107349540 + 30309770 30310135 THE1B 368 - 0 368 95089 170 2 0 26 1 0 10 9 0 107 0 15 40 chain 31050 chr14 107349540 + 30310143 30310544 THE1B-int 1605 + 1206 1585 82437 262 19 0 102 4 1 14 chain 19457 chr14 107349540 + 30310658 30310924 THE1B 368 + 95 368 128798 77 5 4 128 2 0 5 4 14 45 chain 27096 chr14 107349540 + 30322908 30323269 THE1B 368 + 7 368 95955 6 2 0 27 0 5 127 3 2 26 3 1 167 chain 43057 chr14 107349540 + 30331392 30332171 L1MA2 4263 - 158 940 65348 44 8 15 71 87 71 103 49 52 25 1 2 23 0 6 31 1 0 38 1 5 22 20 17 13 2 0 104 0 4 136 chain 122844 chr14 107349540 + 30348784 30350329 THE1A-int 1579 + 17 1579 30100 135 0 12 239 4 2 331 0 3 188 14 6 378 4 15 12 0 1 240 chain 16501 chr14 107349540 + 30358467 30358693 L1P2 5180 + 4 229 136916 16 1 0 125 7 6 29 0 2 10 1 0 37 chain 30060 chr14 107349540 + 30358698 30359106 L1PA6 6164 + 5758 6162 84628 233 29 31 134 6 0 6 chain 23233 chr14 107349540 + 30378704 30379031 LTR12C 1709 + 789 1203 114531 33 11 51 207 0 47 30 5 5 41 chain 21073 chr14 107349540 + 30391263 30391527 AluY 311 + 38 303 123644 96 9 10 159 chain 23225 chr14 107349540 + 30405328 30405586 AluY 311 + 28 286 114562 258 chain 26951 chr14 107349540 + 30415128 30415414 AluYb8 318 - 10 296 96450 286 chain 514214 chr14 107349540 + 30424584 30430703 L1PA5 6144 - 2 6144 5755 1149 1 0 365 1 0 43 0 1 560 0 3 362 1 2 248 0 1 206 0 1 887 0 1 4 1 0 472 1 2 579 0 1 86 9 0 100 16 1 304 6 7 18 10 19 18 0 15 549 12 26 55 13 14 43 chain 467678 chr14 107349540 + 30441864 30447681 L1PA8 5853 + 50 5853 8123 21 2 0 11 1 0 12 50 14 61 0 8 125 12 0 74 3 2 405 0 3 268 9 13 78 2 1 505 2 1 148 0 1 473 0 4 212 0 1 794 0 1 83 1 2 470 4 5 22 7 8 295 1 0 175 0 1 384 1 3 273 0 2 302 0 18 233 1 0 46 8 6 70 1 0 4 2 1 51 2 1 14 6 5 93 chain 29949 chr14 107349540 + 30477170 30477488 AluYb8 318 + 0 318 84970 318 chain 35820 chr14 107349540 + 30484080 30484517 L1PA7 6471 + 5995 6449 75107 141 0 1 80 1 0 122 0 17 93 chain 45043 chr14 107349540 + 30492522 30493034 MER9a1 513 + 0 513 63002 324 0 1 188 chain 38505 chr14 107349540 + 30497358 30497873 L1PA11 4918 - 455 970 71431 52 8 7 10 7 6 237 0 1 80 3 4 118 chain 3822 chr14 107349540 + 30508245 30508290 MER20B 722 - 163 208 210063 45 chain 13978 chr14 107349540 + 30510979 30511136 MLT2A2 560 + 0 158 144661 18 0 1 139 chain 44418 chr14 107349540 + 30511136 30511685 MER41A 554 + 0 554 63674 457 0 1 4 1 0 4 0 5 83 chain 62797 chr14 107349540 + 30512173 30513118 L1PB1 5432 - 12 929 51539 16 1 0 8 6 5 21 0 1 23 2 0 12 10 7 30 13 1 16 1 0 40 4 3 16 2 1 52 2 0 10 4 0 11 1 0 33 1 0 8 4 3 297 5 2 96 0 1 82 0 4 118 chain 116919 chr14 107349540 + 30513119 30514612 L1PB1 5432 + 2982 4482 32151 165 0 1 196 0 14 133 1 2 238 5 1 105 0 5 119 1 2 24 27 15 204 0 1 275 chain 109600 chr14 107349540 + 30515366 30516839 THE1A-int 1579 - 0 1579 34299 19 0 1 83 0 35 483 0 10 62 7 0 13 0 5 84 8 56 91 0 1 114 3 4 61 2 3 14 0 2 199 6 7 147 20 28 8 1 0 4 0 1 44 chain 291501 chr14 107349540 + 30517183 30520830 HERVL-int 5654 + 1995 5654 13931 161 16 13 670 0 1 212 0 8 109 9 11 23 10 11 555 4 5 190 0 2 269 3 0 9 1 0 477 5 9 890 1 3 5 2 0 26 chain 94300 chr14 107349540 + 30534228 30535301 L1P1 4361 + 3233 4328 38260 150 0 3 412 0 21 332 1 0 148 6 5 24 chain 126143 chr14 107349540 + 30541200 30542842 THE1B-int 1605 + 0 1600 29053 21 0 1 406 1 26 251 2 3 85 9 4 291 2 0 235 0 1 175 63 0 101 chain 4058 chr14 107349540 + 30558639 30558686 L1MA2 4263 + 1051 1098 206510 47 chain 451148 chr14 107349540 + 30567366 30572834 L1PA6 6164 + 4 6160 8732 84 0 735 19 0 1 55 5 9 195 9 13 1210 20 0 742 0 3 112 2 3 4 0 1 28 1 2 310 2 1 149 0 12 178 53 1 22 0 2 932 4 0 1004 0 1 328 chain 115013 chr14 107349540 + 30576170 30577679 L1P2 5180 + 2 1531 32788 148 1 0 97 1 0 260 1 0 8 1 0 139 4 5 126 10 8 140 0 25 446 19 19 108 chain 27350 chr14 107349540 + 30577679 30577992 L1PA5 6144 + 5814 6128 95111 182 1 2 130 chain 5903 chr14 107349540 + 30639109 30639176 L1PA4 6152 + 6067 6134 186155 67 chain 219898 chr14 107349540 + 30642693 30645159 L1PA4 6152 - 9 4177 17883 104 0 1 737 1 0 181 0 1 1264 0 1701 179 chain 29482 chr14 107349540 + 30667958 30668336 THE1C 375 - 0 375 86700 165 0 1 4 1 0 80 3 0 125 chain 8626 chr14 107349540 + 30668338 30668444 THE1C-int 1605 - 2 110 167609 43 0 2 63 chain 15507 chr14 107349540 + 30670800 30671099 THE1B 368 + 0 306 139870 111 11 12 28 86 92 63 chain 4441 chr14 107349540 + 30678647 30679025 MSTD 398 - 0 398 201435 38 181 177 30 112 136 17 chain 41078 chr14 107349540 + 30707087 30707653 MER41A 554 + 0 554 67801 391 42 17 15 0 8 37 8 13 73 chain 91677 chr14 107349540 + 30724078 30725503 L1PA15 4387 - 30 1443 39063 28 5 0 14 3 1 31 19 16 50 1 0 10 4 0 22 1 0 14 0 1 39 1 0 21 6 5 18 1 5 150 1 0 41 4 2 62 5 0 14 7 9 208 7 21 47 4 5 121 17 13 195 1 0 26 2 0 132 8 12 55 6 1 24 chain 6795 chr14 107349540 + 30770983 30771079 MLT2B2 565 + 0 97 178994 32 3 4 61 chain 33769 chr14 107349540 + 30786278 30786708 MER57A1 433 - 0 423 77985 13 0 1 41 6 0 88 2 0 280 chain 14709 chr14 107349540 + 30822152 30822321 L1PA5 6144 + 5974 6144 142243 27 0 1 142 chain 560426 chr14 107349540 + 30832743 30838774 L1PA2 6032 + 0 6032 329 74 0 1 5957 chain 14969 chr14 107349540 + 30853676 30853851 L1PA6 6164 + 5980 6156 141417 37 0 1 138 chain 23062 chr14 107349540 + 30856141 30856447 AluY 311 + 0 295 115339 32 3 0 89 13 5 169 chain 41610 chr14 107349540 + 30868505 30869035 MLT2A2 560 - 0 560 67140 67 0 3 77 0 11 86 0 1 117 1 4 109 0 12 73 chain 525114 chr14 107349540 + 30873714 30880073 L1PA7 6471 - 10 6465 4677 179 0 1 583 0 1 58 0 19 605 0 1 416 1 2 743 0 4 211 0 1 151 1 2 41 2 1 130 0 12 410 0 4 178 3 8 49 28 13 117 0 2 157 0 3 93 4 1 100 1 0 716 8 19 153 11 13 80 0 10 24 1 0 31 0 2 542 3 1 57 0 37 29 1 2 46 1 0 137 15 17 243 chain 29532 chr14 107349540 + 30882826 30883136 AluYa5 310 - 0 310 86518 310 chain 21068 chr14 107349540 + 30915710 30915949 L1PA5 6144 - 6 245 123670 239 chain 545323 chr14 107349540 + 30943251 30949260 L1PA3long 6157 + 4 6151 2031 148 0 1 615 8 136 507 0 9 1757 1 0 2136 1 2 836 chain 23224 chr14 107349540 + 30957107 30957406 AluSc5 308 + 11 305 114572 115 2 0 131 2 1 37 2 0 10 chain 12773 chr14 107349540 + 30978943 30979189 L1MA1 4479 + 3957 4190 149162 24 7 8 82 8 7 26 5 3 35 1 0 9 1 0 11 3 1 9 7 0 18 chain 5105 chr14 107349540 + 31007692 31007749 L1MB7 1623 + 517 574 194033 57 chain 29869 chr14 107349540 + 31007814 31008131 AluYb8 318 + 0 317 85217 317 chain 21624 chr14 107349540 + 31013531 31013812 AluSx 319 + 0 277 121682 26 3 0 212 9 8 31 chain 3871 chr14 107349540 + 31016001 31016043 LTR12C 1709 - 991 1033 209302 42 chain 19223 chr14 107349540 + 31016143 31016510 LTR12C 1709 - 654 1059 129464 82 0 78 57 1 0 85 119 80 23 chain 4892 chr14 107349540 + 31016372 31016487 LTR12C 1709 - 641 756 139539 115 chain 80842 chr14 107349540 + 31031375 31032353 LTR13 1007 + 0 1007 43249 71 1 0 198 0 2 110 4 5 297 0 17 95 0 11 6 0 1 162 3 1 31 chain 72154 chr14 107349540 + 31044518 31045593 L1PREC2 3366 + 2006 3048 47404 165 1 3 13 0 5 93 0 2 464 3 1 47 10 9 41 1 0 5 3 0 10 32 24 17 6 1 15 3 1 9 1 0 21 36 19 41 2 0 36 chain 3178 chr14 107349540 + 31060148 31060267 Tigger4a 237 + 3 122 221385 30 67 67 22 chain 396899 chr14 107349540 + 31133160 31137790 L1P2 5180 + 544 5178 10203 243 1 0 5 2 1 40 1 0 64 0 4 237 1 7 301 1 0 211 1 4 44 0 1 771 22 0 155 0 10 267 0 5 275 1 0 326 3 0 843 0 4 279 2 6 443 1 0 46 1 0 38 1 0 4 chain 566461 chr14 107349540 + 31154015 31160043 L1HS 6032 - 0 6032 119 3796 0 1 1198 0 3 1034 chain 28375 chr14 107349540 + 31183271 31183582 AluYb8 318 + 0 304 91680 126 7 0 178 chain 51324 chr14 107349540 + 31194236 31194989 L1PA13 3608 - 94 823 58085 10 5 0 13 6 3 19 4 1 20 2 0 5 2 0 47 2 0 5 1 0 56 1 0 62 9 7 106 1 0 32 1 0 153 3 1 73 2 3 4 0 1 98 1 0 10 chain 195803 chr14 107349540 + 31199084 31201293 L1PA5 6144 - 18 2234 19515 689 0 1 138 1 5 14 1 5 740 1 0 240 1 0 384 chain 2856 chr14 107349540 + 31207661 31207691 U6 107 - 77 107 227730 30 chain 19032 chr14 107349540 + 31208631 31208840 L1PA3long 6157 - 1 210 130027 209 chain 7582 chr14 107349540 + 31244567 31244659 L1MB3 1562 - 141 232 173654 70 1 0 21 chain 8216 chr14 107349540 + 31250141 31250320 L1MB8 1703 + 1495 1621 169848 93 67 14 19 chain 2900 chr14 107349540 + 31251173 31251249 L1MB7 1623 + 828 900 227041 22 28 25 21 1 0 4 chain 29541 chr14 107349540 + 31263004 31263314 AluYa5 310 - 0 310 86472 310 chain 11180 chr14 107349540 + 31288059 31288196 MLT1A0 366 + 174 311 155517 137 chain 117044 chr14 107349540 + 31302861 31304442 THE1B-int 1605 - 5 1605 32109 318 0 1 101 22 13 198 19 6 197 22 22 33 11 23 121 5 6 8 1 0 99 1 26 16 0 1 395 0 2 14 chain 23409 chr14 107349540 + 31306745 31307089 MER75 514 + 1 345 113603 27 13 19 7 6 0 141 1 2 55 4 3 90 chain 14236 chr14 107349540 + 31307095 31307283 MER30 238 - 5 213 143776 103 4 23 46 0 1 35 chain 25288 chr14 107349540 + 31350890 31351187 AluY 311 + 8 300 103280 118 5 0 174 chain 4538 chr14 107349540 + 31376737 31376795 L1MB8 1703 - 158 217 200353 4 0 1 54 chain 6472 chr14 107349540 + 31407191 31407274 MER2 342 - 126 209 181453 83 chain 34689 chr14 107349540 + 31435054 31435600 LTR10F 562 + 0 562 76641 32 1 5 122 0 9 10 14 17 34 0 24 13 6 12 53 28 0 13 0 1 23 19 18 89 2 0 87 chain 21630 chr14 107349540 + 31437608 31437899 AluY 311 + 3 297 121656 128 0 2 81 25 26 57 chain 194380 chr14 107349540 + 31437899 31440955 HERVIP10FH-int 2884 + 149 2824 19642 59 7 0 190 9 0 70 4 10 97 2 0 15 302 0 37 1 0 37 0 6 84 1 0 73 8 4 72 1 0 118 1 2 87 14 16 19 0 2 82 9 13 28 0 3 104 6 4 7 3 0 9 1 0 11 1 0 58 7 2 132 5 0 13 61 39 16 18 1 32 33 21 39 10 0 3 1 0 15 5 4 152 0 3 112 1 0 162 0 2 36 1 0 24 1 0 250 7 14 100 1 0 58 1 4 5 1 0 51 4 3 12 1 0 14 10 4 35 chain 35255 chr14 107349540 + 31441254 31441766 LTR10F 562 + 0 554 75856 33 0 4 46 1 0 60 1 57 15 0 9 7 22 0 30 18 17 66 0 1 36 1 0 21 1 0 73 2 0 79 chain 5075 chr14 107349540 + 31444070 31444149 Tigger1 2417 - 2282 2364 194359 24 7 10 48 chain 18399 chr14 107349540 + 31500145 31500494 THE1C 375 + 0 375 131790 15 10 8 15 7 16 25 0 10 46 0 4 39 50 56 102 8 7 32 chain 28313 chr14 107349540 + 31508773 31509094 AluYg6 310 - 7 310 91893 100 18 0 203 chain 3570 chr14 107349540 + 31518137 31518177 MLT2A2 560 + 517 557 214139 40 chain 20512 chr14 107349540 + 31536481 31536721 L1PA5 6144 - 2 241 125591 16 1 0 223 chain 13032 chr14 107349540 + 31545425 31545811 L1MB7 1623 - 332 674 148115 6 1 0 17 44 30 13 5 1 15 5 0 6 70 60 6 7 0 86 7 6 11 1 0 36 9 8 41 chain 23108 chr14 107349540 + 31596564 31596847 AluSq2 311 - 17 297 115104 162 3 0 118 chain 4658 chr14 107349540 + 31607285 31607440 Tigger4a 237 + 162 237 198985 14 87 7 54 chain 11131 chr14 107349540 + 31608440 31608726 MLT1A0 366 + 0 308 155696 43 55 72 39 67 72 82 chain 10256 chr14 107349540 + 31625558 31625720 AluSp 311 + 62 291 159342 76 35 102 51 chain 59440 chr14 107349540 + 31672956 31673644 L1PA5 6144 - 0 685 53147 244 1 4 242 2 0 115 4 0 80 chain 3765 chr14 107349540 + 31694977 31695021 L1MB7 1623 - 692 736 210878 44 chain 35514 chr14 107349540 + 31706308 31706750 MER41A 554 - 107 554 75536 7 0 10 6 2 0 115 3 0 309 chain 41425 chr14 107349540 + 31711411 31711949 MER41A 554 - 20 554 67387 123 23 19 392 chain 7064 chr14 107349540 + 31712568 31712651 L1PA16 3655 - 110 193 176996 83 chain 36025 chr14 107349540 + 31713016 31713543 LTR10F 562 - 0 562 74868 145 0 3 33 1 0 108 1 0 4 27 37 9 0 49 30 36 11 133 chain 7021 chr14 107349540 + 31713966 31714066 HY3 101 + 0 101 177313 30 8 9 62 chain 40693 chr14 107349540 + 31715567 31716036 LTR7Y 441 - 0 441 68303 276 28 0 165 chain 240716 chr14 107349540 + 31716790 31719875 HERVH-int 3825 - 705 3825 16734 219 1 0 252 0 3 111 0 43 277 0 3 191 0 10 295 3 31 78 0 4 96 0 35 691 12 17 7 0 1 57 23 1 38 6 56 24 1 0 9 2 1 38 5 0 12 143 22 9 2 0 323 1 7 159 chain 2924 chr14 107349540 + 31719255 31719292 HERVH-int 3825 - 3327 3364 226635 37 chain 40355 chr14 107349540 + 31719875 31720344 LTR7Y 441 - 0 441 68800 276 28 0 165 chain 9129 chr14 107349540 + 31727814 31727915 HY3 101 - 0 101 164912 101 chain 34637 chr14 107349540 + 31740771 31741209 MER4A1 472 + 0 445 76707 107 0 4 34 0 1 115 3 4 64 0 1 115 chain 12225 chr14 107349540 + 31743537 31743701 LTR8 732 - 540 716 151319 18 5 8 125 0 9 16 chain 169081 chr14 107349540 + 31746308 31749551 MER4-int 2692 + 157 2681 22162 155 1 0 199 0 1 109 0 60 13 0 4 16 20 20 42 1 15 38 5 9 14 384 0 386 0 3 13 305 0 204 1 0 273 8 10 41 1 0 32 346 209 196 9 7 195 0 1 173 0 23 63 chain 30821 chr14 107349540 + 31749570 31750020 MER4A1 472 + 0 458 82835 126 31 14 25 2 1 58 7 28 17 1 6 183 chain 5568 chr14 107349540 + 31775725 31775794 U3 216 + 0 69 189392 69 chain 11250 chr14 107349540 + 31800007 31800716 THE1C-int 1605 - 1018 1441 155224 120 2 0 11 542 258 34 chain 8859 chr14 107349540 + 31802751 31802897 Tigger1 2417 + 961 1119 166331 13 8 9 19 0 3 45 7 15 54 chain 3643 chr14 107349540 + 31840257 31840298 MER58A 224 + 42 83 212939 41 chain 15543 chr14 107349540 + 31842961 31843228 Tigger2 2703 + 2278 2563 139760 63 52 67 86 2 0 21 2 7 41 chain 20661 chr14 107349540 + 31878051 31878273 AluYa5 310 + 36 294 125103 105 0 36 117 chain 124045 chr14 107349540 + 31905964 31907436 SVA_D 2077 - 348 2077 29688 290 1 51 187 0 78 39 3 141 26 2 1 155 3 0 10 39 2 24 0 37 663 5 0 25 chain 16052 chr14 107349540 + 31910026 31910222 L1PA5 6144 + 5949 6143 138210 51 1 2 129 3 0 12 chain 78718 chr14 107349540 + 31912436 31913337 L1PA5 6144 + 5246 6140 44179 69 13 6 651 1 0 4 0 1 163 chain 35833 chr14 107349540 + 31935612 31936083 MER50 708 - 24 499 75087 58 2 9 114 1 0 137 2 1 116 1 0 40 chain 25252 chr14 107349540 + 31942591 31942950 THE1A 353 - 0 353 103470 40 6 7 46 5 0 58 1 0 92 5 4 106 chain 64212 chr14 107349540 + 31962540 31963329 L1PBa1 4058 + 2526 3318 50908 62 4 0 13 0 4 51 0 1 551 10 12 98 chain 517280 chr14 107349540 + 31963339 31969850 L1PA7 6471 + 5 6470 5454 154 0 1 82 7 22 404 48 49 121 0 12 745 128 8 218 0 4 6 4 0 303 0 2 443 1 0 944 0 1 312 1 0 120 1 0 10 0 10 117 1 2 489 0 8 74 0 8 139 0 4 447 0 3 167 2 0 86 0 1 99 0 4 91 0 1 58 0 4 658 0 2 18 1 2 12 chain 20131 chr14 107349540 + 31986882 31987237 THE1B 368 + 0 368 126744 44 9 24 95 13 12 86 59 58 49 chain 5397 chr14 107349540 + 31995863 31995925 LTR12C 1709 - 877 939 191018 62 chain 21260 chr14 107349540 + 32018705 32019104 MSTA 426 - 0 426 122991 95 15 35 30 47 28 79 10 16 10 17 37 96 chain 62114 chr14 107349540 + 32028734 32029452 SVA_B 1603 - 1 711 51844 585 5 6 35 1 0 14 5 1 35 4 0 34 chain 34346 chr14 107349540 + 32037545 32037973 MER75 514 - 11 440 77132 5 0 1 423 chain 5055 chr14 107349540 + 32053844 32053904 L1MB8 1703 - 115 175 194577 60 chain 13098 chr14 107349540 + 32054343 32054516 MER30 238 - 0 191 147854 99 1 0 9 4 23 60 chain 3757 chr14 107349540 + 32061714 32061774 MER53 195 + 44 106 211001 37 5 7 18 chain 7391 chr14 107349540 + 32062292 32062420 MER2 342 + 131 260 174821 4 0 1 12 5 16 6 11 0 90 chain 24908 chr14 107349540 + 32068693 32069117 MER6 865 - 2 468 105290 16 0 1 4 5 8 23 13 37 153 1 5 106 53 60 22 0 3 28 chain 79415 chr14 107349540 + 32069842 32070711 L1PA3long 6157 - 882 1750 43780 704 1 0 164 chain 79614 chr14 107349540 + 32070711 32071599 L1PA3long 6157 + 5264 6151 43770 43 1 0 77 1 0 10 1 2 755 chain 36491 chr14 107349540 + 32081455 32082394 L1MA2 4263 + 3540 4140 74249 32 1 0 12 2 0 7 9 8 63 326 0 105 1 5 25 27 28 38 1 0 93 11 9 93 6 0 47 1 0 9 4 2 8 3 1 15 chain 499169 chr14 107349540 + 32084509 32090899 L1PA7 6471 - 7 6416 6886 143 1 0 7 7 6 168 0 1 328 1 3 194 0 8 16 0 1 144 0 15 80 0 1 109 12 10 274 1 0 125 3 1 25 0 2 322 2 0 748 0 2 241 1 0 4 1 2 237 5 1 81 6 10 211 12 0 239 2 6 491 2 3 314 5 7 285 0 3 105 0 3 585 14 14 326 1 2 45 0 1 67 5 3 113 110 106 22 11 10 139 chain 4512 chr14 107349540 + 32090977 32091033 THE1D 372 + 316 372 200653 56 chain 547212 chr14 107349540 + 32103295 32109435 L1PA3long 6157 - 0 6151 1805 80 7 6 2308 0 1 548 1 2 35 1 2 727 0 1 993 0 4 201 1 0 289 0 4 121 0 1 280 0 1 187 19 17 105 0 1 237 chain 85353 chr14 107349540 + 32122036 32123157 MER11A 1151 - 0 1151 41396 12 4 3 6 0 1 44 1 0 153 0 1 4 1 0 37 0 1 30 13 20 159 0 1 120 1 0 21 3 5 228 0 11 184 21 31 79 chain 496104 chr14 107349540 + 32131509 32138202 L1PA7 6471 - 3 6468 7063 34 9 0 8 0 9 60 33 13 14 9 8 106 1 0 84 0 1 28 0 11 163 0 68 244 0 3 116 1 0 135 0 1 557 0 2 231 12 11 32 0 4 514 2 0 84 0 1 96 0 1 58 5 17 231 1 0 44 0 2 268 3 0 90 12 8 354 3 7 101 0 2 5 1 2 72 0 2 101 337 0 31 0 8 474 0 3 460 3 0 10 0 3 27 0 1 159 20 20 327 19 14 418 7 11 25 0 1 67 1 2 102 42 57 242 chain 55111 chr14 107349540 + 32139633 32140405 L1PA14 3548 - 92 839 55636 41 1 0 17 1 0 5 1 0 15 4 2 33 4 0 12 1 0 110 1 0 6 0 1 77 1 0 6 2 0 17 4 0 109 2 0 4 2 0 48 2 0 15 4 2 227 chain 6632 chr14 107349540 + 32155925 32156004 U6 107 - 28 107 180223 79 chain 98546 chr14 107349540 + 32174024 32175357 LTR12D 1347 - 0 1347 37141 265 2 1 29 4 3 27 27 0 107 0 2 82 1 0 120 0 17 104 48 6 17 0 31 193 7 43 300 chain 3629 chr14 107349540 + 32174798 32174840 LTR12D 1347 - 762 835 178749 18 0 31 24 chain 327916 chr14 107349540 + 32176708 32180721 HERV9-int 5642 - 1729 5642 12278 9 0 32 1033 0 1 400 0 3 1184 1 0 144 83 0 83 1 0 4 0 1 74 0 5 10 5 0 133 5 4 207 0 1 575 52 0 10 chain 51278 chr14 107349540 + 32180749 32181437 LTR12D 1347 - 0 739 58132 265 1 0 34 1 0 28 27 0 177 1 0 11 2 1 96 0 41 20 11 52 14 chain 7313 chr14 107349540 + 32181437 32181526 LTR12D 1347 - 848 937 164148 89 chain 25734 chr14 107349540 + 32181532 32181895 LTR12D 1347 - 947 1347 101152 64 2 38 47 9 10 241 chain 59016 chr14 107349540 + 32192295 32193271 L1PREC2 3366 - 320 1260 53384 36 6 4 32 25 11 11 3 0 29 1 0 17 6 1 17 32 24 10 3 0 4 1 0 26 6 1 6 0 5 6 1 0 54 2 0 148 5 1 95 16 18 141 18 19 167 0 5 52 chain 36083 chr14 107349540 + 32214259 32214669 L1PA5 6144 - 0 410 74782 410 chain 4031 chr14 107349540 + 32219089 32219174 L1M2 1805 - 951 1034 206898 15 24 22 46 chain 2299 chr14 107349540 + 32223134 32223187 L1MA8 2339 + 2215 2265 235392 12 8 6 24 1 0 8 chain 258914 chr14 107349540 + 32223906 32226746 L1PA3long 6157 - 0 2840 15755 707 0 1 606 1 0 1526 chain 4640 chr14 107349540 + 32244067 32244252 MER21B 843 - 655 839 199194 14 53 52 32 20 17 19 21 24 26 chain 398791 chr14 107349540 + 32263062 32267324 L1HS 6032 - 127 4389 10145 4262 chain 515194 chr14 107349540 + 32275830 32281975 L1PA6 6164 - 2 6164 5646 61 3 1 1709 0 1 21 0 4 234 0 2 650 4 5 284 0 1 854 0 1 905 3 8 6 5 0 140 0 1 25 0 1 734 15 14 33 0 1 63 25 32 371 chain 279609 chr14 107349540 + 32282758 32286155 L1PA7 6471 - 15 3421 14656 140 17 18 209 0 1 153 0 1 313 1 0 48 5 6 128 4 1 613 2 0 147 1 5 441 0 1 339 0 1 51 1 2 49 0 3 226 5 6 504 chain 110482 chr14 107349540 + 32286157 32287586 L1PA7 6471 + 1574 3030 34079 56 1 3 29 7 0 6 6 12 104 9 17 100 5 0 315 10 5 28 1 23 54 0 1 298 16 9 168 1 12 126 0 1 89 chain 22189 chr14 107349540 + 32290065 32290334 AluSp 311 + 21 287 119404 102 2 0 5 1 0 159 chain 400316 chr14 107349540 + 32335070 32341012 L1PB1 5432 + 19 5281 10088 16 0 2 5 2 0 256 1 4 80 1 0 4 9 8 12 9 2 136 1 0 6 3 4 52 0 3 298 4 3 118 0 4 300 2 0 63 1 0 7 2 0 3 7 0 191 0 6 326 1 2 121 2 0 5 5 17 425 1 0 86 1 3 299 0 3 121 675 0 269 0 2 251 0 1 196 3 0 6 9 0 366 7 9 4 1 0 221 0 5 116 0 1 645 14 12 24 1 0 9 17 12 8 2 0 50 5 4 16 1 0 44 chain 57957 chr14 107349540 + 32338062 32338705 L1PA2 6032 + 5387 6029 53996 625 1 0 17 chain 3169 chr14 107349540 + 32369205 32369310 L1MA3 4352 + 4251 4328 221575 7 2 0 24 36 11 17 5 4 14 chain 3125 chr14 107349540 + 32373681 32373715 tRNA-Gly-GGA 38 + 1 35 222461 34 chain 36321 chr14 107349540 + 32377661 32378151 L1P4 1494 - 305 791 74475 26 0 5 195 2 0 49 6 0 82 0 1 5 9 7 116 chain 44904 chr14 107349540 + 32387568 32388061 L1PA4 6152 + 5658 6151 63172 493 chain 2962 chr14 107349540 + 32397681 32397750 MIRb 242 + 69 137 225842 13 24 23 32 chain 42411 chr14 107349540 + 32424077 32424691 Tigger1 2417 + 1796 2417 66136 188 0 1 249 1 0 16 9 5 16 0 2 66 14 6 13 27 44 15 chain 22653 chr14 107349540 + 32449606 32449929 L1PA16 3655 - 2345 2668 117309 77 21 24 111 3 0 111 chain 39279 chr14 107349540 + 32451333 32451843 THE1C-int 1605 + 0 571 70354 12 4 3 95 0 54 32 1 0 185 0 2 62 3 10 116 chain 6088 chr14 107349540 + 32457740 32457822 MSTA 426 + 330 414 184500 39 0 1 17 1 2 25 chain 28344 chr14 107349540 + 32469300 32469786 L1MA4 2864 - 321 811 91782 27 6 7 14 1 0 55 1 11 79 19 16 93 34 33 18 1 0 66 7 6 65 chain 44558 chr14 107349540 + 32489927 32490502 MER61E 571 - 0 571 63514 39 0 1 290 0 1 5 1 0 25 1 0 84 4 0 126 chain 41069 chr14 107349540 + 32492974 32493749 MER41A 554 + 0 554 67812 162 249 27 224 0 1 140 chain 28816 chr14 107349540 + 32501670 32501979 AluYg6 310 + 0 309 89822 309 chain 23196 chr14 107349540 + 32581800 32582089 AluY 311 + 4 295 114693 130 0 1 16 1 0 4 1 3 137 chain 7431 chr14 107349540 + 32596020 32596140 L1MB3 1562 + 1433 1552 174566 6 2 0 29 1 0 31 0 3 20 2 1 29 chain 96360 chr14 107349540 + 32596377 32597593 SVA_B 1603 - 0 1272 37713 6 2 0 584 1 0 7 4 44 15 1 92 27 0 3 74 80 0 74 3 6 202 0 2 136 chain 3011 chr14 107349540 + 32597104 32597178 SVA_B 1603 - 898 932 214702 19 40 0 15 chain 209000 chr14 107349540 + 32600791 32603134 L1PA4 6152 - 0 2347 18568 1738 0 1 61 0 4 164 1 0 379 chain 18779 chr14 107349540 + 32603134 32603345 L1PA4 6152 + 3594 3805 130738 211 chain 3251 chr14 107349540 + 32630863 32630899 MLT1F 544 + 2 38 219986 36 chain 10087 chr14 107349540 + 32671250 32671356 U6 107 + 0 106 160146 106 chain 10087 chr14 107349540 + 32672369 32672475 U6 107 - 1 107 160147 106 chain 11739 chr14 107349540 + 32703640 32703791 MER50 708 - 76 227 153305 86 0 1 44 1 0 20 chain 538270 chr14 107349540 + 32703864 32709960 L1PA4 6152 - 62 6151 3111 615 0 1 1290 1 0 918 0 5 7 10 5 1046 0 2 965 2 0 660 1 0 114 24 18 443 chain 285984 chr14 107349540 + 32742690 32746639 L1PA10 4194 + 252 4161 14289 19 3 1 14 1 0 8 61 52 10 1 0 4 4 7 7 5 0 6 1 0 10 1 0 5 28 11 52 62 60 135 0 5 7 6 1 456 1 0 893 0 4 190 0 1 10 1 2 475 0 4 28 5 4 262 0 1 127 2 1 314 0 3 5 1 0 153 20 16 116 9 1 138 24 26 221 3 0 33 1 0 11 chain 9085 chr14 107349540 + 32756569 32756943 THE1C-int 1605 + 0 427 34986 14 2 1 95 0 54 263 chain 191202 chr14 107349540 + 32756974 32759440 L1PA8 5853 - 0 2475 19944 93 1 0 58 3 7 6 7 0 10 1 0 71 2 0 26 25 24 474 0 2 69 0 5 274 1 0 334 0 1 56 5 6 344 4 6 201 1 6 188 1 2 203 0 1 8 chain 27207 chr14 107349540 + 32759852 32760972 THE1C-int 1605 + 456 1605 34986 39 9 14 6 5 0 112 0 28 90 0 9 249 3 0 18 1 0 11 2 0 82 2 0 5 20 20 466 chain 29559 chr14 107349540 + 32761731 32762049 AluYb8 318 + 0 318 86379 318 chain 7063 chr14 107349540 + 32778728 32778818 MLT1A 405 - 26 115 177003 42 1 0 47 chain 77923 chr14 107349540 + 32784369 32785588 L1MA3 4352 - 13 1196 44561 8 3 0 3 1 0 15 1 0 25 1 0 6 1 0 22 2 0 81 1 0 9 108 83 131 6 7 77 2 0 5 7 3 208 0 1 241 20 21 5 2 0 16 0 4 212 chain 20899 chr14 107349540 + 32786501 32786760 MER47A 366 + 71 331 124279 201 0 1 58 chain 94615 chr14 107349540 + 32794725 32795921 L1PA8 5853 + 4621 5853 38181 95 0 13 280 0 2 79 1 0 437 0 29 8 1 0 44 2 0 62 20 18 52 2 1 19 1 0 93 chain 3351 chr14 107349540 + 32796156 32796193 MLT1J2 417 - 120 157 218040 37 chain 23940 chr14 107349540 + 32812698 32812981 AluY 311 + 26 311 110685 106 0 1 110 0 1 67 chain 17278 chr14 107349540 + 32821836 32822290 L1MA6 2487 - 85 484 134838 4 1 0 18 3 0 39 95 57 7 2 0 45 21 5 68 0 4 69 55 56 27 chain 21606 chr14 107349540 + 32822758 32823025 L1P1 4361 + 4075 4341 121745 11 0 2 62 1 0 155 1 0 23 2 1 12 chain 25240 chr14 107349540 + 32832507 32833051 MLT2A1 477 - 0 477 103534 41 6 0 7 4 44 12 3 0 24 5 0 29 0 1 8 0 1 21 98 0 63 32 31 18 0 2 5 4 1 113 1 2 35 1 5 14 chain 385025 chr14 107349540 + 32854639 32859941 L1PB1 5432 - 12 5355 10606 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 30 13 1 16 1 0 34 10 9 18 1 0 52 2 0 8 6 2 11 1 0 12 1 0 17 2 0 11 294 97 302 0 2 77 3 0 82 2 1 9 0 1 498 0 317 402 90 39 271 5 1 172 0 1 339 17 0 100 1 7 9 0 4 86 0 1 175 2 0 211 0 1 142 0 12 347 0 3 116 16 17 123 1 0 4 0 1 150 15 15 894 chain 14014 chr14 107349540 + 32909306 32909462 L1PA5 6144 - 248 404 144532 156 chain 18975 chr14 107349540 + 32909462 32909694 L1PA5 6144 + 5910 6144 130167 220 1 3 11 chain 27709 chr14 107349540 + 32922791 32923090 AluYd8 298 - 0 298 94010 184 1 0 114 chain 458245 chr14 107349540 + 32930102 32935943 L1PA8 5853 + 50 5849 8465 22 2 0 10 1 0 13 49 13 54 5 10 112 0 2 16 18 6 104 3 4 111 0 1 108 0 3 11 7 1 365 0 1 97 0 1 437 0 3 76 0 1 274 0 2 118 20 3 51 9 0 192 11 12 490 0 1 26 8 12 25 0 1 31 0 1 574 1 0 318 0 1 4 1 0 226 0 2 27 0 1 33 5 9 247 0 1 393 4 5 48 0 6 109 0 1 37 0 1 95 0 2 82 0 1 470 1 0 44 2 0 38 0 1 32 1 0 8 2 1 52 2 1 19 1 0 89 chain 23236 chr14 107349540 + 32952996 32953300 L1PA7 6471 - 10 317 114513 56 0 1 20 1 2 79 6 8 5 1 0 136 chain 258600 chr14 107349540 + 32954345 32957569 L1PA8 5853 - 324 5803 15774 520 2 0 3 1 0 263 3 0 199 0 2 1160 1 0 87 0 2280 237 0 1 241 0 4 142 2 15 66 0 4 197 59 20 6 1 0 10 2 0 22 chain 31996 chr14 107349540 + 32959047 32959501 LTR7B 505 - 10 505 80871 41 14 13 45 1 0 34 1 0 80 10 12 18 3 27 25 1 0 6 0 8 33 0 1 37 0 10 105 chain 6469 chr14 107349540 + 32965907 32965986 MADE2 80 + 0 79 181483 79 chain 3797 chr14 107349540 + 32970680 32970802 MLT1J2 417 - 275 389 210435 29 58 52 28 2 0 5 chain 514157 chr14 107349540 + 32986521 32992529 L1PA5 6144 + 0 6129 5760 120 0 14 54 0 87 10 1 0 623 0 3 229 0 5 24 9 0 660 0 1 483 2 1 1130 6 9 214 0 2 13 1 3 187 0 4 752 1 0 325 0 1 429 1 0 273 0 15 15 1 0 191 2 1 118 1 0 133 chain 6994 chr14 107349540 + 33010134 33010254 L1PB1 5432 + 5306 5418 177504 21 3 1 4 1 0 14 2 0 26 1 0 20 1 0 12 1 0 14 chain 60545 chr14 107349540 + 33049761 33050436 L1PA3long 6157 - 0 676 52552 250 1 2 424 chain 246018 chr14 107349540 + 33050436 33053327 L1P1 4361 - 1454 4359 16448 1292 0 6 784 26 26 98 7 0 47 1 18 62 1 0 264 15 14 294 chain 227833 chr14 107349540 + 33087606 33091003 L1PB3 3668 - 48 3434 17434 6 1 0 12 10 7 26 7 3 23 17 15 24 2 1 8 1 0 13 20 4 87 4 3 95 1 0 148 1 14 47 1 3 78 6 0 9 28 31 295 1 0 25 0 1 25 0 8 266 0 1 4 1 0 32 1 2 195 14 0 158 14 30 17 8 9 363 10 11 225 0 1 8 7 10 57 12 8 127 0 1 99 25 10 60 60 59 216 0 2 86 1 0 5 0 2 7 0 1 15 25 16 10 0 7 17 0 3 130 5 7 65 0 2 31 chain 25120 chr14 107349540 + 33138833 33139530 THE1C 375 - 12 375 104173 14 0 1 166 0 1 1 344 0 37 18 26 117 chain 23074 chr14 107349540 + 33154645 33154950 AluY 311 + 0 302 115277 15 8 5 106 0 1 104 9 8 63 chain 12500 chr14 107349540 + 33169760 33169997 Tigger3a 397 + 58 342 150241 17 15 64 17 2 12 103 33 21 50 chain 329192 chr14 107349540 + 33258933 33266481 L1PA11 4918 + 32 4629 12230 10 2 0 20 0 1 13 12 9 30 0 2 11 2 0 53 1 0 32 6 3 257 5 6 400 2305 0 337 0 2 4 0 1 234 8 7 34 326 0 299 0 1 17 3 0 12 1 0 16 1 14 61 0 2 8 0 5 29 316 0 44 0 3 95 0 2 89 2 3 6 1 0 28 10 12 12 1 5 73 1 0 29 9 13 36 0 1 221 1 0 157 4 0 128 1 0 128 11 18 252 0 2 190 0 4 153 6 7 124 4 0 226 2 0 8 0 1 58 20 0 21 21 25 52 1 0 25 0 2 96 3 7 10 4 0 31 1 11 8 0 3 12 15 15 67 2 0 11 66 53 15 1 0 13 2 0 11 47 33 18 chain 183354 chr14 107349540 + 33259820 33262089 L1PA8 5853 - 0 2265 20645 92 2 1 19 2 1 48 19 17 67 2 0 43 2 1 218 0 1 335 5 3 50 8 6 840 0 1 28 0 2 373 0 3 116 chain 5556 chr14 107349540 + 33262926 33262998 L1PA11 4918 + 1385 1457 189514 72 chain 68569 chr14 107349540 + 33273550 33274468 MER11A 1151 - 89 1151 49004 58 22 23 44 1 2 14 0 1 58 8 41 12 0 1 123 0 1 145 0 1 94 0 1 109 0 2 38 8 4 12 0 3 42 0 5 61 1 100 31 1 0 36 chain 27883 chr14 107349540 + 33307159 33307468 AluYf4 310 - 0 310 93417 106 0 1 203 chain 546092 chr14 107349540 + 33320366 33326514 L1PA4 6152 - 1 6150 1931 1492 1 0 982 0 2 1354 2 1 206 0 1 886 0 1 489 1 0 161 1 0 512 0 1 61 chain 379302 chr14 107349540 + 33340828 33346314 L1PB1 5432 - 10 5406 10779 18 1 0 12 1 0 22 1 0 19 0 5 14 1 0 5 47 35 11 24 23 21 1 0 16 2 1 52 2 0 9 5 1 14 3 2 4 1 0 24 33 21 287 1 8 18 0 1 149 4 0 20 0 1 50 0 1 100 0 1 446 2 3 39 21 7 241 13 12 37 22 5 135 0 2 292 0 1 395 1 0 22 3 1 325 10 7 375 9 0 359 1 0 4 6 7 116 7 8 6 1 0 5 2 0 186 7 11 24 1 5 525 27 6 76 16 8 45 0 1 25 6 7 344 1 0 4 7 8 17 16 15 21 46 47 71 5 6 129 chain 7013 chr14 107349540 + 33374102 33374187 MER85 139 - 43 128 177373 85 chain 3894 chr14 107349540 + 33380588 33380648 MER58C 217 - 1 62 208964 14 5 6 41 chain 31623 chr14 107349540 + 33395546 33396052 L1MA3 4352 + 3853 4324 81442 168 2 0 72 44 20 117 4 0 30 2 0 22 2 1 5 1 0 22 4 3 11 chain 12134 chr14 107349540 + 33428127 33428289 MER30 238 - 0 180 151677 102 10 28 50 chain 20182 chr14 107349540 + 33435794 33436008 AluYb9 318 + 100 314 126589 214 chain 15862 chr14 107349540 + 33436038 33436259 L1MA6 2487 + 1601 1821 138769 45 1 0 14 1 0 119 4 5 37 chain 121299 chr14 107349540 + 33465061 33466629 THE1B-int 1605 + 0 1605 30602 84 0 7 94 17 16 121 0 3 56 0 1 50 8 33 125 0 1 1004 0 1 9 chain 11071 chr14 107349540 + 33466983 33467121 THE1B 368 + 220 355 155926 70 3 0 65 chain 25781 chr14 107349540 + 33518541 33518905 THE1B 368 - 0 368 100961 77 3 0 94 1 0 44 20 25 83 0 5 27 2 0 13 chain 3020 chr14 107349540 + 33531465 33531497 L1PA2 6032 - 203 235 224605 32 chain 526026 chr14 107349540 + 33557267 33563332 L1PA5 6144 + 3 6142 4585 427 2 1 96 0 13 454 0 26 571 0 1 681 0 1 503 0 2 162 0 7 664 0 19 385 0 1 262 0 2 86 0 1 1014 0 1 598 1 6 5 4 0 150 chain 209196 chr14 107349540 + 33580878 33583240 L1PA4 6152 - 9 2369 18551 104 0 1 41 7 0 112 2 1 582 0 4 288 1 0 4 0 1 376 1 0 254 0 1 435 0 1 155 chain 15702 chr14 107349540 + 33616744 33616927 L1PA5 6144 + 5939 6129 139258 50 1 8 132 chain 34008 chr14 107349540 + 33618994 33619393 L1PA7 6471 - 2 400 77606 125 0 1 79 2 0 193 chain 17788 chr14 107349540 + 33629664 33629857 L1PA5 6144 + 5951 6144 133454 193 chain 64597 chr14 107349540 + 33672546 33673320 L1PA4 6152 - 0 793 50748 12 0 6 64 3 14 17 0 1 153 2 1 356 0 2 167 chain 96782 chr14 107349540 + 33731997 33733092 L1PA4 6152 - 668 1766 37621 202 6 10 643 1 0 243 chain 47246 chr14 107349540 + 33733098 33733638 L1PA4 6152 + 5611 6152 61001 427 0 1 113 chain 17826 chr14 107349540 + 33743183 33743547 MER57B2 428 - 18 428 133316 21 85 94 17 2 1 102 14 0 8 0 43 30 0 9 85 chain 7370 chr14 107349540 + 33789570 33789652 L1PA5 6144 + 6059 6141 174977 82 chain 10975 chr14 107349540 + 33804282 33804432 L1PB1 5432 - 332 480 156293 81 2 0 67 chain 17832 chr14 107349540 + 33821019 33821243 L1PA7 6471 + 6226 6451 133297 139 6 7 79 chain 21742 chr14 107349540 + 33911657 33911999 THE1C 375 + 0 364 121236 22 0 5 33 9 23 30 0 1 24 1 5 36 20 19 151 1 0 15 chain 29890 chr14 107349540 + 33915368 33915680 AluYb8 318 - 6 318 85134 312 chain 41924 chr14 107349540 + 33928034 33928554 MER41A 554 - 0 554 66725 142 0 4 234 0 29 43 10 11 91 chain 71454 chr14 107349540 + 33964173 33965067 L1PA7 6471 - 2993 3889 47720 273 6 6 21 1 0 78 0 4 401 3 1 48 9 10 54 chain 251749 chr14 107349540 + 33965067 33968053 L1PA7 6471 + 3468 6469 16137 29 1 0 126 1 0 43 0 5 354 3 0 28 0 1 203 0 1 264 0 2 678 0 1 198 0 2 80 0 1 130 0 3 514 0 1 145 0 2 36 1 0 17 1 6 121 3 0 10 chain 7312 chr14 107349540 + 34023655 34023786 UCON11 162 - 25 152 175357 12 4 3 12 4 0 75 9 10 15 chain 31270 chr14 107349540 + 34075300 34075650 L1PA3long 6157 - 19 369 82045 21 0 1 107 1 0 221 chain 22287 chr14 107349540 + 34076907 34077276 THE1C 375 - 0 375 118963 26 1 0 19 0 1 106 41 44 40 26 30 57 1 0 52 chain 108000 chr14 107349540 + 34133242 34134629 L1PA3long 6157 + 4663 6126 34715 527 0 3 111 0 8 209 0 2 300 1 2 26 1 62 131 0 1 81 chain 10009 chr14 107349540 + 34194358 34194475 L1PA5 6144 + 6022 6139 160540 117 chain 23818 chr14 107349540 + 34215949 34216215 L1PA2 6032 - 4 266 111377 7 4 0 255 chain 32195 chr14 107349540 + 34216215 34216569 L1PA2 6032 + 5440 5794 80528 354 chain 28645 chr14 107349540 + 34258789 34259094 AluYa5 310 - 6 310 90535 186 1 0 118 chain 29590 chr14 107349540 + 34290048 34290372 AluYb9 318 + 0 318 86236 118 5 0 82 1 0 118 chain 28464 chr14 107349540 + 34293453 34293908 L1M1 2793 + 2251 2685 91320 47 19 17 8 16 0 8 1 0 109 18 15 91 0 1 51 0 1 21 0 1 7 1 0 45 1 0 12 chain 515481 chr14 107349540 + 34294719 34301523 L1PA5 6144 + 1 6135 5623 121 0 14 40 5 26 188 11 7 181 0 1 428 0 1 75 1 0 85 10 1 1734 0 25 141 319 0 130 6 17 155 1 0 559 2 3 65 0 1 290 0 1 78 0 1 899 4 5 662 414 0 200 chain 14102 chr14 107349540 + 34300958 34301123 L1PA5 6144 + 5972 6137 144210 165 chain 7212 chr14 107349540 + 34321959 34322177 MLT1E 632 - 6 237 175988 49 1 0 40 112 126 16 chain 43471 chr14 107349540 + 34329756 34330282 L1PA7 6471 - 1 527 64843 18 1 0 206 1 0 38 1 3 261 chain 5168 chr14 107349540 + 34334877 34334939 Ricksha_c 1012 - 163 225 193375 62 chain 110826 chr14 107349540 + 34336165 34344087 THE1B-int 1605 - 0 1605 33996 129 0 5 508 2 3 143 0 1 134 1 0 225 6357 27 65 0 1 24 0 4 302 19 21 13 chain 33304 chr14 107349540 + 34343192 34343641 MER41A 554 + 0 467 78725 180 7 17 145 0 1 11 0 3 66 9 13 31 chain 29656 chr14 107349540 + 34365269 34365585 AluYb8 318 - 1 317 86045 316 chain 4637 chr14 107349540 + 34377690 34377750 LTR41 747 - 1 64 199218 35 0 3 25 chain 8358 chr14 107349540 + 34379524 34379642 LTR32 486 + 16 136 169082 82 7 9 29 chain 23818 chr14 107349540 + 34415299 34415584 AluSp 311 + 1 284 111375 46 2 0 237 chain 6210 chr14 107349540 + 34430307 34430716 MADE1 96 - 2 96 183497 47 320 5 42 chain 34560 chr14 107349540 + 34432475 34432913 LTR2 463 - 0 463 76810 72 18 38 191 0 5 157 chain 6229 chr14 107349540 + 34440781 34440851 L1MA3 4352 - 405 475 183323 70 chain 8362 chr14 107349540 + 34448681 34448776 MER87B 500 + 0 95 169069 95 chain 24589 chr14 107349540 + 34449679 34449970 AluSp 311 + 8 305 107046 66 0 6 225 chain 113397 chr14 107349540 + 34452995 34454300 SVA_B 1603 - 0 1599 33254 589 0 39 55 4 0 42 0 76 65 0 40 79 0 116 306 1 0 151 0 28 13 chain 13954 chr14 107349540 + 34517120 34517271 L1PA2 6032 + 5881 6032 144736 151 chain 3075 chr14 107349540 + 34540690 34540727 MIR3 191 + 74 112 223428 23 0 1 14 chain 95648 chr14 107349540 + 34547902 34549008 SVA_D 2077 + 414 2077 37916 128 0 80 242 16 8 31 3 0 13 5 493 668 chain 11474 chr14 107349540 + 34549099 34549232 THE1A 353 + 220 353 154405 133 chain 543965 chr14 107349540 + 34608549 34615327 L1PA7 6471 + 0 6469 2216 406 1 4 773 0 1 26 0 4 652 1 0 7 7 8 269 13 14 205 0 1 101 1 0 169 0 1 16 0 1 493 313 0 352 1 0 333 2 0 43 0 1 100 1 2 27 1 0 1299 1 2 311 1 0 78 10 4 256 0 1 509 chain 554354 chr14 107349540 + 34619278 34625428 L1PA3long 6157 + 0 6157 903 6 1 0 2385 1 5 811 0 1 59 6 5 25 0 1 490 0 1 157 0 1 1274 1 2 934 chain 19486 chr14 107349540 + 34632550 34632783 L1PA5 6144 - 13 248 128702 49 4 6 180 chain 128956 chr14 107349540 + 34654471 34655875 L1PA3long 6157 + 4752 6156 28321 1404 chain 3541 chr14 107349540 + 34657152 34657196 MLT1F 544 - 0 44 214687 44 chain 213980 chr14 107349540 + 34662252 34664651 L1PA5 6144 - 19 2426 18227 830 0 4 185 0 3 72 0 1 1312 chain 24724 chr14 107349540 + 34694659 34694937 L1PA3long 6157 + 5879 6157 106302 278 chain 5890 chr14 107349540 + 34728371 34728468 MER53 195 + 1 106 186281 23 1 0 4 3 9 60 0 3 6 chain 99635 chr14 107349540 + 34742323 34743426 L1PA5 6144 + 5018 6126 36873 28 0 1 244 0 4 831 chain 26708 chr14 107349540 + 34747306 34747675 THE1D 372 + 0 370 97294 75 19 0 53 0 4 41 6 22 117 0 1 27 1 0 30 chain 75944 chr14 107349540 + 34750145 34751574 MER11A 1151 - 0 1151 45519 66 1 0 224 20 1 24 314 34 155 4 0 42 38 0 46 1 0 21 6 8 86 0 1 54 0 1 38 37 0 22 0 2 32 8 5 117 0 99 73 chain 406453 chr14 107349540 + 34756630 34762333 L1PB1 5432 - 8 5355 9898 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 12 10 7 15 18 9 7 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 22 4 1 10 1 2 288 4 3 126 15 8 46 4 0 9 5 6 186 3 4 71 1 0 28 1 2 21 9 11 441 1 2 130 3 0 245 0 2 190 0 2 357 0 1 328 1 0 81 0 5 10 0 1 210 1 0 232 2 0 265 4 5 135 310 1 24 8 7 14 0 5 204 9 0 318 12 3 318 1 3 199 8 6 100 1 4 369 chain 162817 chr14 107349540 + 34763682 34765438 L1PA2 6032 - 969 2725 22961 1756 chain 90022 chr14 107349540 + 34765438 34766408 L1PA2 6032 + 5054 6024 39606 970 chain 3830 chr14 107349540 + 34776881 34776987 MIRb 242 + 84 206 209930 44 47 63 15 chain 19198 chr14 107349540 + 34790910 34791133 AluY 311 + 82 308 129532 34 0 1 15 0 1 103 0 1 71 chain 52054 chr14 107349540 + 34803990 34804617 PABL_A 660 - 0 660 57590 69 0 3 301 0 25 85 0 5 172 chain 29808 chr14 107349540 + 34805030 34805483 MER51B 395 - 0 395 85412 150 1 0 76 7 6 71 56 0 92 chain 30071 chr14 107349540 + 34808737 34809055 AluYb8 318 - 0 318 84604 318 chain 12623 chr14 107349540 + 34811067 34811274 MER4B 649 - 405 649 149758 45 0 42 39 13 6 52 5 6 22 3 4 28 chain 26917 chr14 107349540 + 34812093 34812507 LTR19A 502 - 50 487 96568 13 11 9 200 1 0 20 31 57 93 0 1 21 5 4 19 chain 17293 chr14 107349540 + 34814388 34814921 LTR12C 1709 - 246 934 134800 22 0 1 31 281 301 15 9 25 54 0 119 58 1 0 62 chain 12859 chr14 107349540 + 34826479 34826639 LTR8 732 - 12 172 148802 160 chain 6055 chr14 107349540 + 34827658 34827730 MSTB 430 + 1 73 184772 72 chain 13119 chr14 107349540 + 34850665 34850902 L1PA15 4387 - 21 241 147771 11 1 0 26 7 2 12 3 1 42 8 5 48 3 2 11 4 0 21 2 1 38 chain 27944 chr14 107349540 + 34854632 34854928 L1PA3long 6157 + 4923 5219 93191 296 chain 79841 chr14 107349540 + 34854956 34855848 L1PA3long 6157 + 5225 6157 43664 79 1 0 292 0 41 520 chain 22670 chr14 107349540 + 34859548 34860240 L1MA3 4352 + 0 346 117213 12 28 10 15 1 0 65 0 1 52 1 0 12 8 0 9 0 1 5 0 2 1 315 0 120 1 0 11 6 0 30 chain 539632 chr14 107349540 + 34860419 34866865 L1PA7 6471 + 3 6470 2874 225 16 1 100 6 13 69 1 0 618 1 3 8 0 11 344 5 0 192 0 1 145 0 1 315 2 0 5 0 2 429 1 0 142 0 6 423 0 8 161 0 1 4 2 1 119 3 4 136 1 0 430 0 1 741 6 10 283 1 0 13 1 0 17 0 1 635 0 3 220 0 1 468 0 1 11 1 0 4 0 1 131 2 0 9 chain 51846 chr14 107349540 + 34869612 34871488 L1MA3 4352 + 3082 4248 57723 75 0 1 51 4 3 149 14 19 5 1 0 17 2 1 176 1 0 5 3 6 53 1 2 49 722 326 26 1 0 8 8 10 28 30 14 7 3 0 65 301 0 20 1 5 32 5 0 13 chain 110699 chr14 107349540 + 34880472 34882039 SVA_D 2077 + 0 2077 34031 4 1 0 6 1 0 6 1 0 577 1 41 51 0 781 208 308 0 403 chain 23957 chr14 107349540 + 34891433 34891757 AluY 311 + 7 302 110578 34 30 0 85 0 1 175 chain 40605 chr14 107349540 + 34894677 34895215 LTR10A 586 + 17 586 68430 42 0 8 7 0 1 26 2 23 16 1 0 62 9 10 69 1 2 303 chain 68335 chr14 107349540 + 34896396 34897254 THE1B-int 1605 + 741 1600 49110 180 5 6 13 0 2 7 3 4 4 1 0 268 3 1 374 chain 20277 chr14 107349540 + 34897259 34897605 THE1B 368 + 0 368 126289 40 0 15 108 71 80 51 1 0 17 1 0 57 chain 2988 chr14 107349540 + 34914378 34914425 MER61-int 3695 + 471 772 225300 19 0 254 28 chain 13423 chr14 107349540 + 34915226 34916091 MER51-int 1546 + 118 795 146614 30 2 1 10 631 457 118 7 0 55 6 0 6 chain 23298 chr14 107349540 + 34917632 34917984 MER51B 395 + 0 388 114219 34 13 32 33 11 17 129 1 0 49 3 15 79 chain 125436 chr14 107349540 + 34944674 34946133 SVA_B 1603 + 0 1600 29269 19 0 28 799 0 1 4 3 1 31 0 38 27 1 79 562 3 1 10 chain 32540 chr14 107349540 + 34946133 34946584 L1PB3 3668 + 2689 3141 79961 201 11 14 84 2 0 17 1 2 76 2 1 57 chain 24631 chr14 107349540 + 34962545 34962833 AluY 311 + 11 295 106820 121 0 1 133 5 0 29 chain 14549 chr14 107349540 + 34962960 34963150 MER65A 464 - 128 320 142731 22 2 4 166 chain 4022 chr14 107349540 + 34964746 34964792 MER61A 341 - 0 46 207058 46 chain 24358 chr14 107349540 + 34975992 34976282 AluSp 311 - 15 302 108332 51 3 0 236 chain 30336 chr14 107349540 + 34977456 34977773 AluYb9 318 + 0 317 83831 317 chain 20534 chr14 107349540 + 35001388 35001681 AluSq2 311 + 7 297 125534 133 5 8 5 3 0 76 14 11 57 chain 25587 chr14 107349540 + 35009065 35009368 AluSp 311 - 6 311 101795 198 1 0 13 0 3 91 chain 15725 chr14 107349540 + 35015919 35016083 U1 164 + 0 164 139191 164 chain 15725 chr14 107349540 + 35025431 35025595 U1 164 - 0 164 139195 164 chain 24333 chr14 107349540 + 35026764 35027031 AluSp 311 - 28 295 108464 267 chain 6835 chr14 107349540 + 35040273 35040797 L1MC1 2226 + 1848 2043 178690 6 0 3 30 10 4 26 1 0 5 384 61 12 3 1 47 chain 2961 chr14 107349540 + 35081554 35081629 MLT1D 503 + 86 155 225871 14 32 26 29 chain 24389 chr14 107349540 + 35109668 35109956 AluSp 311 - 16 301 108144 8 3 0 277 chain 24820 chr14 107349540 + 35111257 35111553 AluSg 306 + 4 298 105772 284 2 0 10 chain 30783 chr14 107349540 + 35119501 35119935 LTR7B 505 + 0 505 82894 105 0 10 60 0 38 12 3 27 26 0 2 85 1 0 73 17 16 20 0 1 5 2 0 25 chain 13464 chr14 107349540 + 35123313 35123466 L1PA4 6152 - 4 157 146468 153 chain 28223 chr14 107349540 + 35123975 35124396 LTR7B 505 + 0 495 92217 108 0 10 19 0 1 37 0 38 12 21 16 8 0 29 2 0 2 36 0 1 43 1 0 79 14 13 41 chain 4969 chr14 107349540 + 35131007 35131073 MLT1A0 366 + 288 353 195493 61 1 0 4 chain 2567 chr14 107349540 + 35143813 35143861 L1MC1 2226 + 2083 2128 232242 18 3 1 20 1 0 6 chain 38850 chr14 107349540 + 35162443 35163201 LTR1 825 + 17 825 70947 51 29 48 69 0 1 12 1 0 6 54 10 19 49 109 12 24 36 20 0 24 130 15 8 60 15 1 100 1 2 59 4 3 28 chain 280499 chr14 107349540 + 35206133 35210372 L1PA7 6471 - 4 3328 14617 420 0 1 126 0 2 297 2 1 257 2 1 15 304 0 327 0 1 34 4 0 212 0 19 84 0 4 58 0 2 793 0 4 59 0 1 343 5 0 2 634 0 261 chain 10427 chr14 107349540 + 35245850 35246189 MLT1B 390 + 30 390 158571 25 0 10 20 90 100 13 64 68 10 0 7 43 9 0 18 1 0 46 chain 5733 chr14 107349540 + 35251699 35251780 L1MB7 1623 - 586 667 187812 29 1 2 14 1 0 36 chain 3171 chr14 107349540 + 35254027 35254062 U6 107 - 0 35 221530 35 chain 22004 chr14 107349540 + 35257223 35257497 AluSg7 307 - 9 297 120211 20 1 0 146 0 1 48 0 14 59 chain 22471 chr14 107349540 + 35260071 35260344 AluSp 311 + 23 298 118150 34 4 6 235 chain 72207 chr14 107349540 + 35267753 35268596 L1PA6 6164 + 5211 6161 47371 10 0 104 82 0 3 751 chain 13924 chr14 107349540 + 35278197 35278374 MER2 342 + 83 260 144840 177 chain 9691 chr14 107349540 + 35287827 35288065 Tigger7 736 + 82 480 162139 40 74 236 70 1 2 26 12 9 15 chain 26780 chr14 107349540 + 35332358 35332668 AluSp 311 - 0 311 97046 114 0 1 196 chain 23839 chr14 107349540 + 35363157 35363454 AluSz6 309 - 13 309 111263 168 1 0 128 chain 8218 chr14 107349540 + 35383247 35383341 L1PA4 6152 + 6058 6152 169836 94 chain 3657 chr14 107349540 + 35388549 35388588 U3 216 - 177 216 212611 39 chain 4011 chr14 107349540 + 35394161 35394274 MSTB 430 + 267 382 207218 22 24 28 30 22 20 15 chain 7227 chr14 107349540 + 35402650 35402749 HY3 101 - 0 101 175902 73 5 7 21 chain 8342 chr14 107349540 + 35488892 35489093 Tigger1 2417 - 1 193 169165 18 68 65 37 6 1 39 1 0 32 chain 25796 chr14 107349540 + 35489103 35489410 AluSx 319 + 0 302 100891 18 3 0 115 2 0 169 chain 119233 chr14 107349540 + 35502990 35505441 THE1B-int 1605 - 5 1605 31322 323 6 0 10 5 0 8 0 13 97 3 7 119 1 3 316 8 9 117 584 0 78 0 4 24 0 2 19 11 36 53 307 0 362 chain 11142 chr14 107349540 + 35504431 35504556 THE1B-int 1605 - 5 130 155665 125 chain 131788 chr14 107349540 + 35507779 35509483 SVA_F 1814 + 335 1813 27674 429 0 40 57 275 0 86 0 15 39 2 0 10 1 0 166 2 0 10 1 0 626 chain 15519 chr14 107349540 + 35508304 35508540 SVA_F 1814 + 900 1102 81650 36 0 1 10 54 19 80 1 1 55 chain 4844 chr14 107349540 + 35508351 35508404 SVA_F 1814 + 1089 1142 151591 53 chain 21660 chr14 107349540 + 35530741 35530979 L1PA3long 6157 + 5919 6157 121544 238 chain 9293 chr14 107349540 + 35544536 35544639 L1PA5 6144 - 1187 1290 164095 103 chain 103595 chr14 107349540 + 35544640 35545810 L1PA5 6144 + 4968 6142 35833 373 0 2 84 0 6 702 4 0 7 chain 29177 chr14 107349540 + 35546671 35546987 AluYb8 318 - 2 318 88169 316 chain 24350 chr14 107349540 + 35555704 35556003 AluSp 311 - 13 311 108373 156 11 10 132 chain 3520 chr14 107349540 + 35579479 35579516 MER5B 177 + 0 37 215064 37 chain 69257 chr14 107349540 + 35598514 35603016 L1M1 2793 - 406 2132 48701 45 0 7 27 5 15 88 866 243 13 0 3 13 6 0 31 8 7 4 0 1 62 767 0 27 0 2 241 1711 307 43 12 16 13 1 0 72 3 1 48 0 1 54 1 0 16 0 2 77 4 16 53 1 0 9 2 0 28 1 0 26 25 20 11 2 0 5 40 38 41 chain 25248 chr14 107349540 + 35612865 35613153 AluSp 311 - 24 311 103485 110 1 0 177 chain 131934 chr14 107349540 + 35621140 35622617 SVA_C 1631 - 3 1602 27647 624 0 1 53 2 0 6 2 0 5 0 124 504 0 1 281 chain 25570 chr14 107349540 + 35640044 35640343 AluSp 311 - 1 300 101873 299 chain 490625 chr14 107349540 + 35643959 35649534 L1PA5 6144 - 0 6141 7336 55 0 9 785 0 3 1607 1 0 509 1 0 341 0 2 254 0 1 363 1 0 88 0 3 532 0 1 39 0 2 420 5 9 350 0 2 42 0 17 94 0 525 7 0 1 4 1 0 76 chain 34826 chr14 107349540 + 35663483 35663888 L1PA7 6471 + 6054 6459 76439 405 chain 24745 chr14 107349540 + 35697069 35697352 AluSx4 309 + 1 284 106199 283 chain 4457 chr14 107349540 + 35710005 35710079 MER33 330 + 8 84 201270 23 9 10 21 0 1 21 chain 12370 chr14 107349540 + 35710118 35710283 MER2 342 + 35 207 150748 33 0 3 8 4 8 120 chain 18083 chr14 107349540 + 35720103 35720487 L1PB1 5432 - 12 365 132640 16 1 0 7 0 1 6 2 1 19 1 0 24 2 0 11 11 8 5 0 3 10 17 7 8 2 0 14 1 0 44 1 0 14 7 6 46 3 1 11 6 2 10 1 0 8 1 0 24 1 0 11 3 0 36 chain 23291 chr14 107349540 + 35736721 35736996 AluY 311 + 13 292 114251 6 0 1 76 0 2 34 0 1 159 chain 21889 chr14 107349540 + 35747445 35747713 AluSc 308 + 22 284 120666 42 2 0 13 5 1 206 chain 27051 chr14 107349540 + 35796002 35796302 AluSp 311 - 7 307 96109 300 chain 4773 chr14 107349540 + 35798166 35798245 L1MC2 1988 + 1079 1159 197660 14 8 9 57 chain 25258 chr14 107349540 + 35799338 35799627 AluSp 311 + 10 299 103427 289 chain 9858 chr14 107349540 + 35799946 35800068 AluJb 308 + 4 126 161294 122 chain 24200 chr14 107349540 + 35812420 35812712 AluY 311 + 0 288 109208 126 4 0 162 chain 47288 chr14 107349540 + 35817115 35817671 LTR6B 557 + 0 557 60973 356 1 2 43 1 0 46 1 2 108 chain 12226 chr14 107349540 + 35828924 35829265 MSTA 426 + 0 392 151312 56 1 0 4 9 10 38 119 141 44 29 58 41 chain 25014 chr14 107349540 + 35842579 35842899 AluSg 306 + 0 304 104713 57 16 0 247 chain 40844 chr14 107349540 + 35865437 35865909 LTR7Y 441 + 0 441 68105 165 31 0 276 chain 24047 chr14 107349540 + 35907433 35907737 AluY 311 + 0 299 110058 126 6 0 13 6 7 153 chain 41120 chr14 107349540 + 35916317 35917186 MLT2A2 560 - 0 560 67751 40 6 0 107 0 11 222 12 11 11 7 3 58 309 0 97 chain 4521 chr14 107349540 + 35953575 35953623 L1PA3long 6157 - 17 65 200552 48 chain 143760 chr14 107349540 + 35970134 35972297 L1MA3 4352 + 2255 4352 25522 59 1 0 185 1 6 29 0 1 15 0 2 293 36 8 19 2 0 5 18 27 271 0 1 16 0 2 54 3 0 108 0 1 24 2 0 6 20 1 264 0 1 208 0 1 42 0 1 114 5 35 37 102 35 109 4 0 7 7 8 10 2 0 15 5 17 19 29 24 17 chain 9611 chr14 107349540 + 36015556 36015659 L1PA3long 6157 + 6039 6142 162539 103 chain 29541 chr14 107349540 + 36023541 36023851 AluYa5 310 - 0 310 86471 310 chain 83780 chr14 107349540 + 36055470 36056470 L1P1 4361 - 33 1019 41996 23 1 0 155 1 0 257 10 0 216 1 0 3 1 0 332 chain 50956 chr14 107349540 + 36056481 36057082 L1PA6 6164 + 5561 6161 58336 400 0 1 192 2 0 7 chain 5282 chr14 107349540 + 36058280 36058346 MER6B 211 - 0 68 192186 14 0 2 52 chain 268083 chr14 107349540 + 36088559 36091727 L1PA6 6164 + 3005 6162 15286 165 1 0 109 0 2 84 0 1 148 24 0 171 0 2 39 0 10 283 1 0 349 1 0 88 6 7 61 7 8 117 1 0 102 0 1 146 1 0 1264 chain 14149 chr14 107349540 + 36103355 36103566 Tigger4a 237 + 0 230 144045 40 14 32 97 4 5 56 chain 63417 chr14 107349540 + 36111640 36112539 L1PA5 6144 + 5327 6135 51274 28 71 19 19 0 7 23 51 0 103 9 13 271 0 1 324 chain 317988 chr14 107349540 + 36200250 36204889 L1PB1 5432 + 111 5409 12675 297 1 2 457 0 1 230 0 1 85 1 0 137 1 2 74 14 0 198 0 7 303 0 3 200 1 0 139 322 0 234 6 8 93 0 5 42 0 1029 63 31 14 490 0 1 212 2 6 187 4 0 74 0 2 90 55 44 98 1 0 75 0 2 19 21 22 46 13 11 24 1 0 9 1 0 9 24 18 46 2 1 16 1 0 44 2 1 14 24 13 14 7 5 4 1 0 14 2 0 24 1 2 19 1 0 13 1 0 5 chain 4630 chr14 107349540 + 36214534 36214593 L1MA9 1812 + 784 842 199298 28 1 0 30 chain 5929 chr14 107349540 + 36246012 36246080 L1PA5 6144 + 6070 6138 185896 68 chain 4122 chr14 107349540 + 36257841 36257889 MER57B2 428 + 371 419 205631 48 chain 21520 chr14 107349540 + 36260550 36260825 AluSq2 311 + 23 296 122071 111 1 0 10 2 1 151 chain 141774 chr14 107349540 + 36293177 36294838 SVA_D 2077 - 16 2077 25862 621 1 2 13 0 49 50 1 306 46 7 46 11 2 1 44 40 0 233 0 40 209 0 3 160 0 2 189 0 2 34 chain 9569 chr14 107349540 + 36304601 36304733 MER85 139 - 0 139 162742 29 7 14 96 chain 536352 chr14 107349540 + 36307092 36313852 L1PA7 6471 - 12 6471 3399 842 0 3 1093 0 2 510 0 1 404 0 4 54 0 19 30 2 0 11 4 3 55 2 1 324 1 5 10 6 9 30 332 0 209 0 6 193 9 0 118 0 4 828 20 21 449 2 1 294 3 0 521 1 2 403 chain 28468 chr14 107349540 + 36343138 36343449 AluYf4 310 + 0 310 91311 123 1 0 187 chain 8469 chr14 107349540 + 36344096 36344200 MLT1B 390 + 284 388 168467 104 chain 20115 chr14 107349540 + 36345522 36345880 THE1B 368 + 0 365 126781 44 65 76 52 4 3 27 2 0 91 0 1 12 8 6 53 chain 26247 chr14 107349540 + 36354161 36354472 AluY 311 + 2 311 99028 121 6 4 184 chain 25777 chr14 107349540 + 36369442 36369743 AluSg7 307 - 5 307 100979 170 0 1 131 chain 12982 chr14 107349540 + 36375828 36376022 MER30 238 + 30 238 148302 78 15 32 56 3 0 42 chain 23855 chr14 107349540 + 36389005 36389717 THE1C 375 - 0 375 111152 25 1 0 56 22 24 116 340 0 10 1 5 19 3 0 26 7 8 86 chain 58196 chr14 107349540 + 36391642 36392315 L1PA5 6144 + 5476 6144 53866 63 0 1 174 7 0 280 0 1 149 chain 31787 chr14 107349540 + 36397177 36397578 LTR57 402 - 1 402 81192 26 6 8 44 2 0 323 chain 39820 chr14 107349540 + 36405696 36406132 L1PA3long 6157 - 0 436 69597 436 chain 4177 chr14 107349540 + 36436000 36436047 MLT1B 390 + 290 337 204877 47 chain 39185 chr14 107349540 + 36437239 36437700 L1PA4 6152 + 5691 6152 70480 91 1 3 5 2 0 362 chain 96220 chr14 107349540 + 36445365 36446437 SVA_E 1901 - 17 1089 37758 383 2 0 279 0 1 126 1 0 116 6 13 39 4 0 110 1 0 5 chain 30137 chr14 107349540 + 36446458 36446845 SVA_F 1814 - 523 875 84360 17 1 0 61 49 0 251 0 15 8 chain 4003 chr14 107349540 + 36446537 36446586 SVA_F 1814 - 777 826 100467 49 chain 87720 chr14 107349540 + 36446859 36447830 SVA_D 2077 - 869 2017 40477 34 0 1 130 0 51 31 0 82 114 0 40 335 0 3 327 chain 111682 chr14 107349540 + 36449909 36451128 L1PA3long 6157 - 0 1222 33754 287 0 3 932 chain 9287 chr14 107349540 + 36472059 36472186 MER77 626 + 495 618 164129 53 4 0 70 chain 17738 chr14 107349540 + 36480656 36481015 L1PB1 5432 - 5 329 133596 5 2 0 18 1 0 8 2 5 21 1 0 22 2 0 16 1 0 5 2 0 30 38 19 23 0 1 18 1 0 15 2 1 53 2 0 8 6 2 11 1 0 11 1 0 21 1 0 11 chain 7721 chr14 107349540 + 36547667 36547798 L1MB8 1703 - 191 320 172773 23 0 5 24 1 0 35 1 0 19 0 1 4 1 0 11 5 0 7 chain 17896 chr14 107349540 + 36553042 36553284 L1PA16 3655 - 135 376 133111 104 10 11 115 2 0 11 chain 25514 chr14 107349540 + 36559178 36559481 AluY 311 + 0 311 102163 34 0 7 91 0 1 178 chain 11670 chr14 107349540 + 36578232 36578368 L1PA5 6144 + 6008 6144 153597 136 chain 461869 chr14 107349540 + 36588428 36593752 L1PA5 6144 - 5 6144 8338 844 0 1 4 7 10 716 0 30 1175 4 2 187 0 6 6 22 772 72 2 1 45 0 1 304 0 1 323 0 1 86 0 2 1355 13 36 159 chain 9350 chr14 107349540 + 36594564 36594674 MER30 238 + 128 238 163803 110 chain 31246 chr14 107349540 + 36605136 36605534 MLT2A1 477 - 80 477 82089 12 5 7 207 3 0 171 chain 24533 chr14 107349540 + 36608042 36608348 AluY 311 + 0 311 107353 12 1 0 56 8 13 51 0 1 178 chain 542081 chr14 107349540 + 36611865 36617894 L1PA3long 6157 - 0 6157 2491 2986 1 0 1893 0 1 371 1 129 35 1 0 575 13 14 153 chain 499853 chr14 107349540 + 36625650 36631893 L1PA7 6471 - 2 6471 6849 10 3 0 48 0 32 92 1 0 587 11 13 21 7 12 30 0 3 16 1 5 264 6 0 6 0 6 13 0 8 111 2 138 62 2 1 6 1 0 55 0 1 251 0 4 468 0 1 628 0 7 22 0 4 13 4 2 43 14 12 320 0 4 246 0 12 19 2 9 232 1 0 465 0 4 121 0 1 53 1 0 291 0 1 15 3 7 393 3 0 67 4 8 43 2 1 5 0 1 328 17 32 384 19 0 117 10 11 284 chain 4550 chr14 107349540 + 36643114 36643250 L1MEf 1413 - 509 631 200211 32 31 30 7 9 0 8 2 0 20 4 1 6 0 1 17 chain 21705 chr14 107349540 + 36651881 36652120 AluYk11 308 - 1 239 121371 4 1 0 234 chain 558275 chr14 107349540 + 36653760 36659885 L1PA3long 6157 + 4 6142 475 911 0 1 371 0 1 123 0 9 2526 0 1 1043 0 1 1151 chain 10261 chr14 107349540 + 36676706 36676828 MER85 139 + 4 136 159316 86 0 10 36 chain 100491 chr14 107349540 + 36701014 36702251 L1PA7 6471 - 13 1259 36632 40 0 4 89 1 0 9 0 1 5 11 7 22 10 8 465 0 3 181 0 4 17 1 5 386 chain 27281 chr14 107349540 + 36713291 36713627 L1PA7 6471 + 6132 6470 95335 72 7 9 257 chain 28836 chr14 107349540 + 36714115 36714445 L1PA5 6144 + 5798 6128 89740 330 chain 341906 chr14 107349540 + 36714940 36719097 L1PA7 6471 + 2244 6457 11836 182 0 3 103 0 2 16 0 1 80 3 1 27 0 4 85 0 3 112 0 2 24 0 4 392 0 2 242 1 0 31 3 1 10 1 10 21 0 5 12 2 1 209 1 0 170 19 3 164 0 3 133 0 2 7 0 3 171 0 1 36 0 2 101 1 0 48 4 3 135 0 4 688 0 3 93 0 4 16 3 4 20 14 17 58 0 3 86 1 4 130 0 1 103 2 0 55 1 0 96 0 4 60 0 2 140 0 10 45 chain 2647 chr14 107349540 + 36729220 36729248 L1PA7 6471 + 6123 6151 231042 28 chain 4244 chr14 107349540 + 36729249 36729295 L1PA7 6471 + 6153 6199 203954 46 chain 21625 chr14 107349540 + 36729295 36729553 L1PA7 6471 + 6203 6458 121676 108 3 0 147 chain 18345 chr14 107349540 + 36734700 36735030 THE1C 375 - 44 361 131944 94 29 25 98 7 6 22 34 26 46 chain 28358 chr14 107349540 + 36800415 36800775 L1PA8 5853 - 17 388 91736 76 1 0 19 2 1 32 0 3 17 0 13 67 2 0 44 1 0 99 chain 52695 chr14 107349540 + 36811018 36811736 LTR12 884 + 0 884 57191 25 1 0 66 0 2 5 2 0 102 1 158 19 2 0 348 28 3 16 1 34 28 6 10 68 chain 110631 chr14 107349540 + 36822256 36823548 L1PA5 6144 - 9 1234 34046 1094 67 0 131 chain 37152 chr14 107349540 + 36823548 36823985 L1P1 4361 + 3893 4328 73187 257 1 0 149 7 6 23 chain 40228 chr14 107349540 + 36826488 36826930 L1PA3long 6157 + 5380 5823 68990 172 0 1 270 chain 29595 chr14 107349540 + 36826931 36827258 L1PA3long 6157 + 5825 6152 86220 327 chain 122646 chr14 107349540 + 36848882 36850722 L1PB3 3668 + 1830 3614 30180 250 31 27 201 0 1 33 2 1 63 26 28 141 0 2 87 1 0 93 0 1 6 2 1 8 0 1 150 0 1 63 2 0 10 0 2 291 1 0 81 0 1 13 6 5 19 0 1 42 0 8 5 4 0 16 49 0 13 1 0 8 1 0 25 8 6 32 7 3 13 21 17 15 chain 188761 chr14 107349540 + 36878628 36880934 L1P2 5180 + 2 2337 20167 148 2 1 43 1 0 53 1 0 56 19 46 166 1 0 272 1 0 6 1 0 207 1 8 846 0 1 482 chain 505272 chr14 107349540 + 36880941 36887042 L1PA6 6164 + 2 6162 6508 193 0 1 304 15 14 425 16 41 84 1 2 109 15 24 661 0 1 471 3 4 374 0 3 454 11 12 523 0 1 49 0 1 619 0 2 652 0 1 987 1 2 36 0 14 88 2 0 8 chain 86607 chr14 107349540 + 36900876 36901834 L1PA4 6152 - 73 1032 40925 710 1 2 247 chain 13114 chr14 107349540 + 36938670 36938857 MER30 238 + 40 237 147789 67 8 0 11 2 20 99 chain 8214 chr14 107349540 + 36996798 36997028 MLT1A1 405 + 65 346 169872 45 76 78 32 27 76 50 chain 22956 chr14 107349540 + 37012771 37013090 LTR17 781 - 455 781 115823 17 10 0 52 0 11 20 17 11 30 1 4 53 0 9 119 chain 37459 chr14 107349540 + 37013412 37013874 LTR17 781 - 72 526 72878 302 13 14 65 0 1 23 10 0 49 chain 92789 chr14 107349540 + 37072431 37073499 L1PA5 6144 + 5075 6144 38718 1056 1 2 11 chain 65904 chr14 107349540 + 37077391 37078107 L1PA3long 6157 - 0 716 50137 716 chain 9866 chr14 107349540 + 37078107 37078223 L1PA3long 6157 + 5320 5436 161256 116 chain 23460 chr14 107349540 + 37079629 37079912 L1PA10 4194 + 3834 4116 113317 248 1 0 34 chain 3745 chr14 107349540 + 37083455 37083581 L1MC3 1789 + 838 969 211245 42 68 73 16 chain 9523 chr14 107349540 + 37086078 37086203 MER85 139 + 4 139 162965 85 1 11 39 chain 80413 chr14 107349540 + 37106176 37107087 L1PA5 6144 - 6 921 43425 310 0 1 299 0 1 237 1 3 64 chain 25279 chr14 107349540 + 37158220 37158587 THE1B 368 - 0 368 103324 74 1 0 92 7 6 25 1 0 57 8 9 56 5 10 25 2 0 14 chain 527324 chr14 107349540 + 37163125 37169285 L1PA6 6164 - 5 6164 4465 567 0 2 237 2 1 23 7 11 388 2 0 564 0 4 164 1 0 4 0 1 1859 2 0 524 0 1 363 1 0 280 6 2 208 15 9 380 1 0 48 0 2 278 0 2 199 0 1 37 chain 6539 chr14 107349540 + 37191442 37191638 L1MC1 2226 + 2021 2188 180925 26 25 16 20 5 0 15 8 6 19 16 6 5 1 0 14 7 6 30 1 0 4 chain 79285 chr14 107349540 + 37214069 37215000 L1PA6 6164 - 2 949 43919 143 0 1 12 6 21 770 chain 23319 chr14 107349540 + 37221851 37222201 THE1C 375 + 0 373 114101 180 0 1 4 1 0 8 1 2 83 28 48 23 6 8 16 chain 3225 chr14 107349540 + 37226127 37226170 MER5C 305 - 48 92 220507 7 0 1 36 chain 20933 chr14 107349540 + 37239288 37239559 L1PA16 3655 + 3303 3575 124172 112 5 6 154 chain 26542 chr14 107349540 + 37251881 37252164 L1PA2 6032 + 5743 6026 97870 283 chain 11632 chr14 107349540 + 37282284 37282424 L1PA7 6471 - 4 154 153764 61 0 10 79 chain 68955 chr14 107349540 + 37283637 37284540 L1PA8 5853 + 4957 5853 48833 46 8 6 75 0 2 478 1 0 44 2 0 71 1 0 5 13 12 44 2 1 13 7 6 93 chain 4009 chr14 107349540 + 37303552 37303705 MIRb 242 + 18 184 207244 35 96 109 22 chain 74309 chr14 107349540 + 37331096 37331972 L1PA7 6471 + 5580 6466 46356 26 0 11 246 0 1 595 2 0 7 chain 538157 chr14 107349540 + 37361763 37367888 L1PA4 6152 - 9 6152 3123 26 9 0 7 0 9 799 0 6 417 1 5 311 0 1 1366 0 1 1061 0 3 17 1 0 780 5 8 291 0 1 6 0 1 1022 1 0 5 chain 23381 chr14 107349540 + 37373731 37374107 THE1D 372 - 0 372 113756 22 19 18 93 2 8 21 7 9 16 5 1 129 9 0 40 0 2 13 chain 80427 chr14 107349540 + 37392986 37393891 L1PA5 6144 + 5235 6142 43415 62 0 4 834 2 0 7 chain 50414 chr14 107349540 + 37449329 37449946 L1P2 5180 - 3404 4117 58701 329 0 2 193 0 94 95 chain 94214 chr14 107349540 + 37449946 37451053 L1PA5 6144 + 5033 6144 38294 89 0 1 148 4 8 144 1 0 721 chain 48447 chr14 107349540 + 37454002 37454577 L1PA2 6032 + 5490 6027 60150 488 36 0 41 2 0 8 chain 5790 chr14 107349540 + 37472563 37472684 MER44D 709 - 591 709 187257 63 0 16 10 27 11 5 3 0 13 chain 136833 chr14 107349540 + 37484250 37485744 L1PA3long 6157 - 2 1496 26674 1494 chain 27291 chr14 107349540 + 37525413 37525710 AluYf4 310 + 0 297 95298 297 chain 6331 chr14 107349540 + 37529482 37529556 MLT1A0 366 + 274 348 182532 74 chain 77327 chr14 107349540 + 37575112 37576148 MER11A 1151 + 7 1151 44817 54 1 100 69 1 0 64 4 0 30 0 2 114 0 1 94 0 1 96 3 1 51 0 1 38 12 6 81 0 33 41 18 0 36 0 1 60 6 7 163 chain 18302 chr14 107349540 + 37631393 37631589 L1PA3long 6157 - 923 1119 131808 196 chain 84020 chr14 107349540 + 37631589 37632505 L1PA3long 6157 + 5240 6156 41898 916 chain 47554 chr14 107349540 + 37636570 37637254 LTR8 732 + 0 717 60806 19 0 1 12 0 9 115 7 6 254 1 4 48 1 4 54 42 60 131 chain 18493 chr14 107349540 + 37647998 37648366 THE1B 368 - 0 368 131523 56 7 6 54 72 75 42 27 24 58 0 1 52 chain 504204 chr14 107349540 + 37657026 37663155 L1PA6 6164 + 56 6149 6585 393 19 0 120 1 0 218 0 17 29 0 1 32 22 4 249 0 1 6 10 9 180 0 1 521 5 0 487 4 1 72 0 4 636 0 2 136 10 0 22 1 0 20 1 0 83 1 0 378 1 0 271 1 0 564 0 1 718 0 1 9 2 1 353 1 0 553 chain 110693 chr14 107349540 + 37673970 37676300 THE1B-int 1605 + 13 1605 34034 245 0 20 88 853 85 237 64 69 460 4 5 196 0 4 183 chain 36001 chr14 107349540 + 37674679 37675143 L1PA6 6164 - 2 468 74893 9 0 2 56 2 0 71 0 1 302 5 6 19 chain 71817 chr14 107349540 + 37683648 37684654 LTR13 1007 + 0 1007 47558 68 23 17 296 8 9 74 1 6 6 3 0 152 2 1 58 7 0 10 1 14 101 5 6 157 3 1 31 chain 8572 chr14 107349540 + 37685345 37685469 L1M1 2793 + 2570 2695 167895 49 1 5 4 1 0 49 1 0 8 1 0 10 chain 119233 chr14 107349540 + 37693908 37695458 THE1B-int 1605 - 0 1589 31321 9 0 1 642 0 1 240 23 31 225 1 26 122 0 1 14 9 10 246 1 3 18 chain 18655 chr14 107349540 + 37695474 37695859 THE1B 368 - 0 368 131070 76 21 0 42 81 84 49 26 27 90 chain 4398 chr14 107349540 + 37757215 37757264 LTR23 429 - 28 77 201952 49 chain 13337 chr14 107349540 + 37757544 37757721 LTR56 451 - 160 340 146945 23 0 3 24 1 0 105 0 1 24 chain 544020 chr14 107349540 + 37762533 37768655 L1PA4 6152 + 6 6152 2206 427 7 6 705 0 1 298 0 4 782 0 1 1710 0 1 695 0 5 663 0 4 457 0 1 184 0 8 194 chain 25582 chr14 107349540 + 37809913 37810290 Tigger3b 1229 + 728 1146 101818 34 1 2 5 3 0 89 5 16 94 0 3 20 1 11 65 1 20 59 chain 548899 chr14 107349540 + 37820125 37826138 L1PA2 6032 - 13 6032 1589 983 0 5 3149 0 1 1625 1 0 182 1 2 72 chain 46387 chr14 107349540 + 37826138 37827036 L1MA2 4263 - 175 908 61696 17 20 15 7 2 0 35 0 3 45 1 0 11 1 0 146 3 0 6 161 13 7 0 1 67 5 4 48 1 0 60 45 38 210 chain 504028 chr14 107349540 + 37827049 37833474 L1PA6 6164 - 2 6164 6599 420 0 1 191 0 2 229 2 6 670 1 0 272 0 8 145 0 8 552 0 1 109 8 9 15 5 6 635 0 1 275 10 0 207 285 0 66 0 2 53 0 1 64 0 2 289 0 2 1203 0 1 150 1 0 371 1 0 29 0 5 8 20 15 139 chain 144090 chr14 107349540 + 37842604 37844374 L1PA7 6471 - 2 1787 25464 10 2 0 84 8 0 9 0 8 18 0 12 166 0 1 118 0 2 317 0 1 108 6 4 420 11 10 115 1 4 212 0 1 165 chain 260310 chr14 107349540 + 37862918 37866627 L1PB1 5432 - 5 5402 15684 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 18 19 8 21 1 0 43 1 0 16 5 1 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 13 58 18 50 2 1 10 77 54 173 4 3 8 0 1 6 1 0 89 2 3 75 4 0 424 0 2 33 1 5 149 0 11 133 1 0 141 13 7 311 0 1743 69 0 6 55 0 4 139 0 8 10 11 28 74 0 14 182 1 0 4 4 5 94 0 1 571 17 18 118 0 1 22 0 1 106 0 1 81 29 13 16 chain 3603 chr14 107349540 + 37881639 37881755 L1ME3A 1206 + 988 1094 213602 21 51 42 28 1 0 15 chain 26130 chr14 107349540 + 37884545 37884850 AluY 311 + 0 299 99480 109 1 0 9 6 0 14 0 1 166 chain 77335 chr14 107349540 + 37902440 37903673 L1PA7 6471 - 12 937 44813 33 0 2 276 312 0 524 0 2 88 chain 7287 chr14 107349540 + 37903673 37903763 U6 107 - 0 90 175531 90 chain 216826 chr14 107349540 + 37913897 37916289 L1PA3long 6157 + 3762 6157 18065 4 1 0 591 0 4 1796 chain 116107 chr14 107349540 + 37930727 37932197 THE1B-int 1605 - 12 1577 32414 64 3 71 254 2 3 595 0 1 146 6 31 400 chain 470033 chr14 107349540 + 37954050 37960114 L1PA7 6471 - 4 6471 8034 6 4 0 131 0 1 6 1 2 4 1 0 187 0 11 419 0 2 77 1 0 488 4 0 137 8 9 38 10 11 26 0 3 228 0 4 156 0 2 25 0 1 54 10 1 18 4 3 413 3 0 5 0 1 450 0 4 79 0 1 299 4 14 128 4 5 118 1 3 196 7 392 44 1 0 428 19 0 183 5 14 191 8 11 536 4 0 6 3 7 38 0 1 72 1 0 265 13 14 50 0 1 195 52 53 11 24 23 18 1 2 146 chain 91185 chr14 107349540 + 37964340 37965330 L1PA2 6032 - 5 999 39113 35 0 1 624 0 3 331 chain 108036 chr14 107349540 + 37965330 37966510 L1PA2 6032 + 3841 5029 34704 876 1 9 303 chain 509522 chr14 107349540 + 37970833 37976963 L1PA6 6164 + 2 6159 6204 45 1 0 398 0 2 120 1 0 116 1 0 4 0 1 172 0 1 588 0 4 59 0 5 227 1 5 27 1 6 260 1 0 283 0 2 765 0 1 96 0 1 82 0 3 245 0 1 185 2 0 248 0 1 17 3 0 181 0 2 213 0 4 316 0 2 284 0 3 310 8 0 12 0 2 156 1 0 294 0 1 407 chain 26300 chr14 107349540 + 38008130 38008430 AluY 311 + 5 306 98827 127 0 1 173 chain 22792 chr14 107349540 + 38020807 38021082 AluY 311 + 12 283 116618 111 3 0 9 4 1 142 0 2 6 chain 159238 chr14 107349540 + 38023856 38025731 SVA_D 2077 - 0 2040 23434 18 1 0 320 0 10 328 8 0 5 0 8 80 0 1 8 10 37 4 0 1 12 49 0 191 1 138 471 0 14 349 5 30 15 chain 3379 chr14 107349540 + 38024650 38024699 SVA_D 2077 - 656 705 93503 49 chain 26953 chr14 107349540 + 38027744 38028047 L1PA3long 6157 - 4 308 96440 270 0 1 33 chain 26968 chr14 107349540 + 38094470 38094771 AluSq10 312 + 0 301 96377 301 chain 481035 chr14 107349540 + 38096522 38102787 L1PA7 6471 - 4 6470 7692 40 0 9 41 8 0 8 0 8 382 1 10 160 315 0 105 0 1 87 0 2 507 0 1 1027 5 535 47 2 0 856 30 0 14 0 1 365 1 0 625 6 5 263 1 2 562 5 6 73 2 10 76 0 3 5 28 13 4 1 0 613 chain 12681 chr14 107349540 + 38123666 38123837 MSTA 426 + 246 426 149523 54 0 5 7 3 6 51 0 1 56 chain 72636 chr14 107349540 + 38130808 38131721 L1PA10 4194 - 33 961 47200 11 1 0 34 3 0 34 1 0 107 0 4 220 0 15 241 0 1 234 1 2 4 1 0 21 chain 93748 chr14 107349540 + 38132952 38134286 L1PA11 4918 + 3264 4578 38421 172 0 1 338 0 1 310 19 20 138 1 0 4 0 1 64 0 4 11 5 0 62 21 18 66 2 0 14 1 0 20 21 12 10 13 9 15 1 0 13 2 0 11 chain 121781 chr14 107349540 + 38162120 38163931 L1MA2 4263 + 2286 4055 30453 42 0 1 209 0 1 39 0 2 5 5 3 27 0 2 27 1 0 6 0 1 15 0 18 80 0 2 142 1 2 61 1 0 10 75 0 7 2 0 100 4 20 90 1 3 51 0 1 63 38 8 168 0 1 86 9 6 74 3 34 113 3 0 150 25 21 78 chain 3222 chr14 107349540 + 38191156 38191193 Charlie1a 1436 - 1303 1340 220549 37 chain 447591 chr14 107349540 + 38223293 38229956 L1PA8 5853 - 0 5745 8826 48 5 9 35 2 1 19 2 1 61 1 0 70 2 0 47 1 0 16 0 4 18 325 0 54 3 4 290 4 8 49 0 18 87 0 6 426 11 37 380 0 3 168 0 2 196 0 1 103 5 6 299 2 0 311 5 9 91 348 12 34 0 1 12 7 3 220 0 5 520 5 0 607 315 0 35 1 0 222 14 17 262 6 7 68 1 0 165 0 3 278 0 2 189 24 12 194 chain 540778 chr14 107349540 + 38236013 38242034 L1PA3long 6157 - 5 6157 2693 167 0 2 4513 10 11 13 1 0 542 0 128 623 0 1 152 chain 45999 chr14 107349540 + 38245452 38246377 L1PA15 4387 - 3638 4280 62043 244 4 0 135 277 0 94 28 26 143 chain 440426 chr14 107349540 + 38249847 38255968 L1PA7 6471 - 12 6466 9046 148 8 9 633 7 10 38 2 1 1599 13 12 182 1 0 299 1 0 5 1 2 592 0 10 206 13 14 66 0 1 66 1 0 795 0 9 13 23 19 42 65 65 326 26 51 123 25 8 48 1 22 173 186 290 20 133 330 110 22 8 109 chain 3525 chr14 107349540 + 38297721 38297761 L1MB2 1706 - 14 54 214961 40 chain 114111 chr14 107349540 + 38307901 38309295 L1PA7 6471 - 14 1446 33070 87 15 35 13 0 4 5 1 5 254 0 7 148 0 1 277 1 0 51 2 1 483 1 5 56 chain 46772 chr14 107349540 + 38309295 38309888 L1P3 4156 + 3555 4139 61198 443 9 1 82 1 4 20 5 2 6 1 0 26 chain 78253 chr14 107349540 + 38332163 38333007 L1PA2 6032 - 0 844 44390 844 chain 35416 chr14 107349540 + 38351306 38351708 L1PA4 6152 - 0 402 75662 18 1 0 131 0 1 252 chain 5750 chr14 107349540 + 38359810 38359894 L1PREC2 3366 - 567 649 187640 43 7 5 34 chain 122807 chr14 107349540 + 38360254 38361826 THE1B-int 1605 + 0 1605 30114 430 0 24 9 1 4 9 10 11 219 0 1 319 4 6 342 0 1 224 0 1 5 chain 85205 chr14 107349540 + 38389252 38390209 L1PA4 6152 - 1 958 41449 333 1 0 123 1 2 499 chain 134290 chr14 107349540 + 38390209 38391685 L1PA4 6152 + 3701 5177 27154 77 0 1 138 1 0 1260 chain 58639 chr14 107349540 + 38404399 38405210 L1PA8A 6298 - 7 825 53614 67 59 58 637 0 10 15 0 1 13 4 1 16 chain 7428 chr14 107349540 + 38416407 38416494 L1PA13 3608 + 1259 1346 174593 87 chain 550718 chr14 107349540 + 38419517 38425662 L1PA3long 6157 - 0 6157 1351 1626 0 1 1880 3 0 1073 1 2 155 0 9 217 1 4 274 0 1 915 chain 84859 chr14 107349540 + 38427022 38428061 MER11C 1089 + 0 1063 41568 225 16 30 58 0 4 344 1 2 27 0 4 43 0 1 325 chain 98833 chr14 107349540 + 38434472 38436003 L1PA13 3608 - 120 1601 37065 20 1 0 20 2 0 5 2 0 13 10 7 27 2 0 9 6 7 24 1 0 19 7 6 31 9 1 26 6 4 46 8 3 60 1 0 8 22 20 4 0 1 39 20 20 45 6 7 18 2 0 317 1 0 17 1 0 5 1 2 240 24 4 78 1 0 93 0 1 207 1 0 5 0 1 21 chain 22900 chr14 107349540 + 38436231 38436487 L1PA3long 6157 - 0 253 116111 15 3 0 238 chain 67650 chr14 107349540 + 38449963 38450973 MER11A 1151 + 7 1147 49388 57 1 100 14 8 0 52 0 4 60 5 0 133 16 17 92 1 2 145 5 7 118 44 75 37 0 1 9 1 0 29 0 1 4 1 0 17 6 7 119 0 4 36 chain 24480 chr14 107349540 + 38463472 38463777 AluSc5 308 - 5 308 107657 74 5 3 226 chain 10050 chr14 107349540 + 38463777 38463900 MER50 708 + 562 686 160320 28 0 1 95 chain 8990 chr14 107349540 + 38480136 38480245 MSTA-int 1630 + 1 110 165661 109 chain 48404 chr14 107349540 + 38480245 38480825 LTR14C 587 + 0 587 60180 54 0 7 526 chain 51063 chr14 107349540 + 38526016 38526569 L1PA3long 6157 - 1621 2174 57688 553 chain 147480 chr14 107349540 + 38526569 38528184 L1PA3long 6157 + 4541 6157 24964 843 0 1 772 chain 112500 chr14 107349540 + 38530069 38531642 THE1B-int 1605 - 0 1604 33537 144 1 2 358 1 0 274 13 17 11 16 12 6 0 1 214 0 4 105 0 25 230 94 93 92 0 2 14 chain 8916 chr14 107349540 + 38534857 38534990 MER66D 528 + 360 491 166059 34 0 1 24 7 0 27 4 8 37 chain 22682 chr14 107349540 + 38535072 38535437 MER83 447 - 42 402 117152 15 0 1 62 12 11 100 51 44 42 0 2 83 chain 20592 chr14 107349540 + 38545411 38545657 L1P1 4361 - 20 263 125324 12 2 1 23 1 0 155 1 0 52 chain 41728 chr14 107349540 + 38545657 38546113 L1PA3long 6157 + 5701 6157 66992 456 chain 170816 chr14 107349540 + 38563715 38565765 L1PA7 6471 + 4394 6438 21959 28 0 1 228 0 1 16 0 4 281 4 0 26 2 0 39 0 1 312 6 2 783 4 0 148 0 1 173 chain 92587 chr14 107349540 + 38571590 38572636 L1PA4 6152 + 5092 6139 38790 983 0 1 63 chain 76884 chr14 107349540 + 38587303 38588272 LTR5_Hs 974 + 0 974 45039 169 1 0 119 0 1 178 0 1 188 1 0 163 8 15 31 8 6 103 chain 56701 chr14 107349540 + 38617244 38618111 MER4D1 891 + 0 884 54720 30 0 1 10 0 1 8 0 1 62 2 1 196 0 1 105 1 0 13 1 0 38 1 20 31 10 12 70 1 6 55 52 51 100 18 9 63 chain 26607 chr14 107349540 + 38649235 38649589 THE1A 353 + 0 353 97632 103 8 7 92 1 0 98 1 2 51 chain 37131 chr14 107349540 + 38659842 38660288 LTR7 482 + 0 482 73336 263 1 32 17 0 1 70 1 3 33 12 14 49 chain 299210 chr14 107349540 + 38660290 38664025 HERVH-int 3825 + 0 3825 13469 532 5 0 38 1 0 10 1 0 24 28 0 13 0 17 23 22 0 41 46 1 21 61 0 9 2 1 23 5 5 21 1 0 444 15 0 462 4 31 1376 0 3 25 8 218 11 6 0 9 3 9 408 0 13 37 chain 39178 chr14 107349540 + 38665283 38665730 LTR7 482 + 0 480 70491 252 0 31 136 0 2 59 chain 53917 chr14 107349540 + 38692113 38692770 L1PA7 6471 - 6 659 56421 7 7 0 599 6 9 38 chain 25773 chr14 107349540 + 38693238 38693529 AluY 311 + 19 311 100998 111 1 2 179 chain 17453 chr14 107349540 + 38703105 38703355 MER2 342 + 89 341 134368 26 0 1 14 0 1 5 2 1 153 8 9 42 chain 33994 chr14 107349540 + 38728432 38728832 L1PA7 6471 - 1 411 77623 348 0 1 43 0 9 9 chain 329180 chr14 107349540 + 38734469 38738619 L1P3 4156 - 17 4152 12231 24 11 8 66 4 7 34 4 5 469 3 0 36 0 2 6 4 0 241 1 0 15 0 1 342 1 0 234 10 11 650 0 2 695 34 26 92 0 1 428 2 0 47 9 10 231 1 0 42 22 7 87 3 14 45 13 12 230 0 1 14 chain 31227 chr14 107349540 + 38738681 38739100 L1P4 1494 - 548 964 82112 332 10 7 77 chain 16989 chr14 107349540 + 38739104 38739344 L1PA16 3655 + 3353 3593 135620 20 2 4 143 0 1 54 8 5 13 chain 15808 chr14 107349540 + 38743750 38743916 L1PA2 6032 + 5858 6024 138932 166 chain 4686 chr14 107349540 + 38744917 38744972 L1MB2 1706 - 13 69 198679 47 0 1 8 chain 24735 chr14 107349540 + 38750413 38750783 L1PB1 5432 - 550 933 106251 69 0 8 77 1 0 77 0 9 16 16 17 74 15 11 25 chain 31073 chr14 107349540 + 38750783 38751373 L1PB1 5432 + 4876 5427 82388 154 0 10 43 48 31 24 10 8 11 6 2 9 2 0 51 1 0 17 1 0 45 1 0 15 31 20 11 7 4 15 2 0 24 1 0 21 2 1 12 1 0 18 2 0 5 chain 20772 chr14 107349540 + 38757025 38757396 L1MA5A 2387 + 2039 2359 124708 23 1 0 46 1 0 49 2 0 62 3 0 11 28 0 65 1 0 11 25 11 23 1 0 19 chain 97598 chr14 107349540 + 38762388 38763726 L1PB2 3958 - 120 1447 37396 63 1 0 93 2 1 63 1 0 73 1 0 93 4 0 13 2 0 65 5 0 65 2 0 114 14 15 200 0 9 47 1 0 49 12 8 150 0 1 205 chain 5585 chr14 107349540 + 38768021 38768230 L1MCa 1829 + 32 172 189222 5 2 0 34 1 0 11 10 5 13 2 0 22 17 5 10 61 14 21 chain 5315 chr14 107349540 + 38773453 38773545 L1PA15 4387 + 494 589 191871 37 20 23 35 chain 13046 chr14 107349540 + 38787240 38787452 L1MA6 2487 - 258 471 148049 160 29 30 23 chain 64954 chr14 107349540 + 38794540 38795293 L1PA6 6164 + 5409 6162 50591 566 1 2 5 1 0 180 chain 26877 chr14 107349540 + 38800166 38800524 THE1A 353 - 0 353 96711 93 1 0 58 4 0 92 2 1 24 0 1 84 chain 41830 chr14 107349540 + 38800792 38801314 MER41A 554 + 13 554 66851 27 0 2 107 1 0 192 0 6 120 3 15 72 chain 25333 chr14 107349540 + 38823551 38823899 THE1B 368 + 0 357 103056 44 0 15 113 16 15 12 4 0 94 1 0 64 chain 29568 chr14 107349540 + 38832960 38833270 AluYb8 318 + 0 310 86339 310 chain 29204 chr14 107349540 + 38842475 38842781 AluYb8 318 + 0 306 88028 306 chain 282664 chr14 107349540 + 38882412 38886404 L1PA10 4194 + 233 4161 14493 9 1 0 8 1 0 22 2 0 15 1 0 5 82 46 18 1 0 5 7 6 7 1 0 6 1 0 14 19 0 94 2 0 191 1 2 198 0 4 6 24 15 6 0 1 435 0 3 119 20 21 507 8 7 99 14 10 185 0 3 101 4 6 199 17 6 11 0 2 38 1 0 229 10 18 122 3 1 473 1 2 5 1 0 136 0 2 83 11 13 39 0 3 321 8 7 33 1 0 11 chain 28874 chr14 107349540 + 38916664 38916972 AluYa5 310 - 2 310 89567 308 chain 104096 chr14 107349540 + 38920403 38921846 L1PA10 4194 + 1903 3315 35716 215 0 3 98 3 7 211 0 1 7 1 0 84 3 4 95 0 2 20 3 0 74 0 1 125 5 4 101 3 1 161 48 12 186 chain 61980 chr14 107349540 + 38921846 38922630 L1PA10 4194 + 3319 4112 51907 415 0 2 230 9 13 37 0 4 56 1 0 36 chain 3685 chr14 107349540 + 38922638 38922684 L1PA10 4194 + 4116 4161 212160 34 1 0 11 chain 440973 chr14 107349540 + 38931327 38937537 L1PA8A 6298 - 12 6268 9024 117 4 5 62 0 1 608 0 4 134 0 1 37 0 1 38 0 2 55 6 7 246 0 1 388 0 2 171 2 0 4 5 0 207 6 4 318 4 0 95 3 34 188 1 0 127 7 11 11 24 2 7 2 0 31 0 1 198 17 24 116 2 1 54 0 4 59 0 7 392 0 3 154 1 0 110 7 0 252 5 6 133 4 7 125 15 19 80 1 0 69 7 9 15 0 48 58 1 2 152 0 3 127 0 4 18 3 0 5 3 10 194 0 14 86 4 0 122 11 12 239 6 4 9 2 1 14 2 0 76 9 1 17 17 16 16 31 24 12 2 1 9 1 0 6 1 0 7 3 2 12 107 89 21 3 0 11 15 9 8 2 0 3 3 0 11 1 0 26 chain 118692 chr14 107349540 + 38946398 38947981 THE1B-int 1605 + 0 1605 31538 112 19 18 4 0 1 295 1 26 27 2 3 580 1 0 4 4 5 92 1 2 29 1 0 98 18 15 247 1 0 47 chain 6901 chr14 107349540 + 38948204 38948280 THE1B 368 + 209 285 178184 76 chain 24007 chr14 107349540 + 38973074 38973401 THE1A 353 - 0 353 110289 243 1 0 25 5 4 14 0 30 24 4 2 11 chain 5930 chr14 107349540 + 38987133 38987313 L1PA12 2803 + 1257 1412 185892 11 13 0 13 48 42 42 12 8 9 2 0 30 chain 3899 chr14 107349540 + 38992001 38992220 MER45B 1037 - 538 755 208871 40 157 155 22 chain 14864 chr14 107349540 + 39002608 39002786 L1PA7 6471 + 6280 6458 141736 178 chain 38811 chr14 107349540 + 39007125 39007625 MLT2A2 560 - 50 560 71003 5 0 1 5 1 0 86 0 11 222 13 12 168 chain 28494 chr14 107349540 + 39017983 39018285 AluYa5 310 + 0 301 91209 132 1 0 169 chain 17537 chr14 107349540 + 39026803 39027019 L1PA6 6164 - 641 863 134164 82 0 1 116 0 9 7 4 0 7 chain 53278 chr14 107349540 + 39027046 39027670 L1PA6 6164 + 5523 6148 56841 125 0 1 499 chain 6951 chr14 107349540 + 39035217 39035300 MER4D1 891 + 716 799 177808 83 chain 264132 chr14 107349540 + 39041515 39045345 L1PB1 5432 - 10 3901 15477 18 1 0 13 1 0 21 1 0 23 26 21 18 23 12 12 3 2 14 11 12 19 19 17 52 2 0 9 2 0 3 2 0 12 1 0 30 41 11 56 0 1 133 0 20 108 0 1 52 0 4 106 0 1 240 0 1 173 0 2 228 0 13 213 21 28 23 1 6 181 1 12 34 0 1 106 0 7 309 29 45 4 1 0 61 0 4 97 1 0 4 4 3 48 15 25 78 4 20 59 4 9 87 8 6 74 1 2 498 11 15 35 7 10 6 3 0 24 0 1 255 7 0 43 chain 4465 chr14 107349540 + 39051629 39051772 LTR49 580 - 42 197 201167 14 15 14 32 51 64 31 chain 516010 chr14 107349540 + 39064670 39071494 L1PA7 6471 - 15 6471 5573 219 7 11 293 1 2 307 0 3 139 4 5 259 392 0 469 0 1 70 0 4 53 1 0 688 1 3 46 11 13 318 0 4 52 0 3 317 8 10 28 0 7 32 0 4 206 0 4 122 0 2 117 0 4 7 0 4 21 4 0 122 1 0 153 9 7 72 0 1 82 0 1 665 8 0 21 1 0 27 18 17 44 6 7 730 1 0 5 0 1 242 14 0 168 9 10 234 chain 14988 chr14 107349540 + 39089096 39089279 MLT2A2 560 + 0 183 141362 183 chain 116182 chr14 107349540 + 39090629 39092176 THE1B-int 1605 + 0 1585 32383 41 1 2 190 12 15 135 0 5 40 3 28 219 0 3 77 33 0 14 10 43 134 5 6 633 chain 542025 chr14 107349540 + 39104151 39110185 L1PA3long 6157 + 1 6157 2498 775 0 128 3596 0 1 219 1 0 491 13 5 892 0 2 47 chain 9598 chr14 107349540 + 39111981 39112098 THE1D 372 + 249 366 162613 58 1 0 4 0 1 54 chain 454648 chr14 107349540 + 39140840 39146494 L1PA6 6164 + 0 6158 8593 91 0 735 1272 30 0 115 0 2 110 1 0 149 0 1 218 0 59 438 0 2 111 1 0 135 1 0 313 1 0 40 0 1 251 1 0 211 4 5 6 1 0 68 274 0 556 0 1 243 5 0 943 1 16 59 0 2 5 chain 20954 chr14 107349540 + 39146494 39146763 LTR66 600 + 264 546 124085 147 2 0 4 1 0 54 0 16 61 chain 45228 chr14 107349540 + 39154970 39155461 L1PA3long 6157 + 5666 6157 62796 491 chain 272006 chr14 107349540 + 39182586 39185662 L1PA4 6152 + 3063 6143 15082 98 4 5 50 0 3 2924 chain 31046 chr14 107349540 + 39190183 39190628 MLT2A1 477 - 10 477 82444 19 17 55 8 4 0 181 0 1 23 0 1 8 3 0 121 17 6 44 chain 25087 chr14 107349540 + 39213418 39213799 THE1D 372 - 1 372 104368 106 4 0 56 49 43 166 chain 59068 chr14 107349540 + 39217140 39217835 L1PA5 6144 - 2 688 53354 7 4 0 146 1 0 32 10 6 495 chain 370554 chr14 107349540 + 39233258 39238044 L1PA5 6144 + 0 6138 11074 120 0 14 67 0 8 416 0 1 544 9 0 66 6 7 580 317 0 482 4 1 43 0 2 23 0 2 787 1 2 517 1 0 61 59 1713 532 1 0 150 chain 29869 chr14 107349540 + 39248844 39249397 L1MA4 2864 + 2282 2809 85214 16 0 1 35 3 0 43 0 2 105 16 15 142 1 0 34 3 0 11 1 0 4 61 34 12 44 51 22 chain 3080 chr14 107349540 + 39274563 39274597 L1MA5 2750 + 555 589 223319 34 chain 29040 chr14 107349540 + 39276309 39276738 L1PA11 4918 + 4066 4499 88809 59 0 1 5 3 2 180 0 4 12 3 9 55 2 1 13 2 0 58 11 9 14 1 0 11 chain 21469 chr14 107349540 + 39279537 39279781 L1PA7 6471 - 134 378 122260 244 chain 84823 chr14 107349540 + 39279936 39280979 MER11C 1089 - 16 1089 41580 281 0 8 185 12 13 212 0 5 38 0 17 47 0 3 161 4 0 103 chain 289829 chr14 107349540 + 39280979 39285015 L1PB1 5432 + 1348 5413 14029 55 9 0 638 5 6 163 18 12 30 7 8 240 8 7 154 1 0 164 0 1 16 1 0 81 0 2 139 0 2 5 2 0 194 0 1 194 0 6 11 0 4 39 0 174 284 0 9 458 0 1 121 0 1 45 11 8 93 5 3 86 1 5 7 23 0 190 7 0 41 0 1 5 1 0 50 106 12 24 1 0 9 1 0 9 5 2 9 2 0 48 7 6 16 1 0 44 1 0 15 3 0 14 9 0 10 33 28 43 1 0 13 1 0 9 chain 44644 chr14 107349540 + 39288442 39288958 MER9a1 513 + 0 513 63436 244 8 5 264 chain 3759 chr14 107349540 + 39294195 39294241 MSTD 398 - 260 306 210967 46 chain 24104 chr14 107349540 + 39315117 39315415 AluY 311 + 8 297 109722 14 8 0 111 1 0 164 chain 31875 chr14 107349540 + 39325691 39326343 L1PA8 5853 - 0 454 81055 93 1 0 19 2 1 40 0 1 11 1 0 9 1 0 71 2 0 33 228 35 141 chain 21393 chr14 107349540 + 39326945 39327202 L1PA7 6471 + 6204 6469 122530 95 1 9 161 chain 25808 chr14 107349540 + 39346242 39346560 AluY 311 + 0 311 100835 132 0 1 42 10 3 124 1 0 9 chain 157342 chr14 107349540 + 39382146 39384718 L1PA13 3608 + 114 2308 23686 22 14 11 17 2 1 12 3 0 24 28 17 71 8 6 118 1 0 15 2 1 16 2 0 7 2 0 6 7 5 19 1 0 18 3 1 15 2 0 114 2 0 48 3 1 127 0 4 27 0 3 97 0 7 105 1 0 327 17 19 5 0 3 84 4 0 18 1 0 56 314 0 565 40 0 182 chain 10154 chr14 107349540 + 39387394 39387512 L1PA5 6144 + 6026 6144 159828 118 chain 533810 chr14 107349540 + 39390902 39397026 L1PA5 6144 + 3 6132 3724 59 0 14 74 8 9 874 1 0 294 3 4 785 0 2 1047 3 5 211 0 1 548 1 2 419 0 1 220 16 0 722 2 0 518 0 1 168 1 6 6 5 0 139 chain 23870 chr14 107349540 + 39414400 39414697 AluSp 311 + 0 294 111083 132 13 10 152 chain 14471 chr14 107349540 + 39417488 39417726 L1PA16 3655 + 3017 3250 142980 29 1 0 22 2 0 57 3 5 5 2 0 69 16 14 32 chain 24754 chr14 107349540 + 39424648 39424935 AluY 311 + 0 292 106146 87 0 4 41 0 1 159 chain 231721 chr14 107349540 + 39435960 39438555 L1PA5 6144 + 3542 6144 17217 739 0 2 1008 0 4 821 0 1 27 chain 528220 chr14 107349540 + 39444399 39450852 L1PA7 6471 - 3 6468 4380 151 1 0 7 14 15 575 0 4 94 3 0 60 0 4 6 4 0 104 5 6 41 0 1 703 0 1 175 1 3 509 2 0 79 1 0 4 0 1 89 1 0 47 5 8 53 0 6 103 3 4 686 0 8 226 9 1 62 6 1 178 0 1 852 0 1 727 0 1 256 0 1 49 1 4 121 5 6 126 0 1 136 9 3 119 0 1 45 chain 130371 chr14 107349540 + 39454281 39455705 L1PA3long 6157 + 4733 6157 27998 1424 chain 6651 chr14 107349540 + 39456498 39456585 HY1 111 + 19 111 180075 22 1 5 37 0 1 27 chain 14561 chr14 107349540 + 39459280 39459486 MER107 203 + 1 203 142703 39 6 0 90 1 0 32 1 4 37 chain 44579 chr14 107349540 + 39465472 39466028 MLT2A2 560 - 1 560 63500 361 0 3 195 chain 544663 chr14 107349540 + 39486375 39492531 L1PA4 6152 + 1 6151 2114 71 7 0 45 1 0 4 0 1 458 1 0 63 2 0 686 0 3 5 8 5 786 0 2 298 0 3 2515 7 0 351 0 5 462 0 1 386 chain 28919 chr14 107349540 + 39527490 39527810 AluYb9 318 - 0 318 89376 15 2 0 303 chain 5850 chr14 107349540 + 39531414 39531578 Tigger4a 237 - 0 166 186695 36 7 14 11 57 54 20 2 0 31 chain 20541 chr14 107349540 + 39581782 39582035 MER4E1 777 - 506 759 125505 253 chain 11395 chr14 107349540 + 39609991 39610151 THE1A 353 - 155 353 154722 46 9 47 105 chain 115256 chr14 107349540 + 39610158 39612347 THE1A-int 1579 - 5 1579 32698 39 0 1 36 0 5 62 4 5 70 0 2 89 0 8 98 5 0 73 5 6 80 5 7 78 0 2 130 0 1 57 11 12 234 3 5 35 0 1 5 2 1 62 644 0 98 0 3 50 0 1 16 1 2 51 0 2 40 0 1 106 chain 24755 chr14 107349540 + 39612374 39612710 THE1A 353 - 27 353 106144 22 13 5 41 1 0 148 1 0 110 chain 23368 chr14 107349540 + 39613698 39613974 AluSp 311 - 15 291 113825 276 chain 28878 chr14 107349540 + 39663655 39663965 AluYf4 310 + 0 310 89555 310 chain 165435 chr14 107349540 + 39674653 39677908 L1PBa 3878 + 992 3688 22600 64 1049 500 49 31 11 6 2 0 495 0 3 183 0 1 247 9 10 146 0 2 105 3 0 288 0 3 116 3 0 198 0 2 252 0 6 9 chain 23773 chr14 107349540 + 39678672 39678951 AluSp 311 - 29 309 111640 209 0 1 70 chain 3709 chr14 107349540 + 39682236 39682279 MER3 215 - 0 43 211804 43 chain 10079 chr14 107349540 + 39684133 39684267 L1PA16 3655 + 3290 3425 160185 110 2 3 22 chain 23069 chr14 107349540 + 39686572 39686943 THE1C 375 - 0 375 115304 25 1 0 122 47 49 93 12 13 50 0 2 21 chain 106858 chr14 107349540 + 39728928 39730193 L1PA6 6164 - 13 1280 34992 82 0 1 46 20 19 265 0 2 852 chain 206921 chr14 107349540 + 39730193 39732579 L1PA5 6144 - 0 2360 18724 11 3 1 124 2 1 10 0 1 1079 25 0 259 0 1 873 chain 16845 chr14 107349540 + 39741584 39741790 LTR27 711 - 505 711 136001 206 chain 7206 chr14 107349540 + 39749050 39749204 MLT1B 390 - 232 390 176027 34 37 39 34 6 7 17 0 1 26 chain 138400 chr14 107349540 + 39753954 39755668 SVA_C 1631 - 1 1590 26413 268 2 0 319 1 0 53 48 0 35 1 0 45 1 0 8 48 0 46 51 0 172 0 37 590 10 0 16 chain 3393 chr14 107349540 + 39754736 39754773 SVA_C 1631 - 684 721 217231 37 chain 3447 chr14 107349540 + 39754829 39754867 SVA_C 1631 - 683 721 172296 38 chain 11889 chr14 107349540 + 39765841 39765967 L1HS 6032 - 3 129 152647 126 chain 5348 chr14 107349540 + 39767753 39767822 LTR7Y 441 - 38 107 191558 39 2 0 23 0 2 5 chain 20716 chr14 107349540 + 39769789 39770026 L1PA5 6144 + 5902 6139 124911 237 chain 410058 chr14 107349540 + 39796781 39801828 L1PA7 6471 - 107 5192 9800 34 0 1 170 1 0 313 0 1 224 2 1 17 0 4 928 0 8 387 12 2 438 0 1 322 0 8 156 2 0 13 1 0 232 0 4 181 0 3 215 0 1 55 3 5 278 12 11 186 0 5 189 10 22 181 1 0 4 0 1 76 17 15 165 3 0 5 1 7 96 6 8 37 0 1 74 chain 52409 chr14 107349540 + 39811232 39811812 L1PA4 6152 - 9 596 57346 145 0 7 435 chain 4008 chr14 107349540 + 39822153 39822219 L1MA8 2339 - 157 220 207255 22 8 5 36 chain 525350 chr14 107349540 + 39822780 39828882 L1PA5 6144 - 4 6129 4646 124 0 6 405 0 6 3 6 0 295 1 5 54 0 1 576 7 9 37 0 2 240 0 5 518 0 1 96 0 1 23 2 0 557 1 0 96 0 4 47 2 1 1799 3 1 76 0 3 1134 chain 34923 chr14 107349540 + 39857727 39858178 LTR12D 1347 - 0 525 76305 220 6 6 23 4 78 198 chain 5091 chr14 107349540 + 39877559 39877678 L1MB1 2102 - 616 734 194162 36 13 15 16 6 0 18 12 15 18 chain 23544 chr14 107349540 + 39889611 39889904 AluY 311 + 0 292 112884 9 1 0 63 0 3 57 0 1 26 4 0 133 chain 7372 chr14 107349540 + 39893180 39893294 L1PA16 3655 - 77 195 174964 87 13 17 14 chain 88121 chr14 107349540 + 39941787 39942792 L1PA5 6144 + 5130 6138 40328 564 0 1 115 1 2 81 0 1 244 chain 251169 chr14 107349540 + 39945222 39948884 L1PA8 5853 - 0 3366 16163 82 17 16 14 2 1 38 0 7 7 18 9 71 2 0 44 1 0 5 7 9 21 8 9 411 1 2 23 0 2 73 1 3 14 0 5 425 0 3 442 309 0 69 3 6 603 17 16 432 2 1 28 0 1 20 3 7 19 5 2 31 3 0 11 11 10 52 0 4 94 0 1 223 chain 121017 chr14 107349540 + 39950445 39951819 L1PA4 6152 - 11 1387 30689 1337 12 14 25 chain 46316 chr14 107349540 + 39951819 39952343 L1P1 4361 + 3201 3726 61606 308 0 1 216 chain 3855 chr14 107349540 + 39953033 39953082 L1MC4 1079 + 142 191 209505 49 chain 25107 chr14 107349540 + 39964952 39965298 THE1B 368 + 0 355 104247 44 0 15 107 7 6 28 2 0 91 6 3 61 chain 123761 chr14 107349540 + 39965310 39966875 THE1B-int 1605 + 0 1600 29788 241 0 3 92 0 2 92 1 26 224 1 2 28 1 2 256 0 3 629 chain 25131 chr14 107349540 + 39966880 39967239 THE1B 368 + 0 368 104122 13 2 0 31 5 20 102 7 6 21 3 1 100 1 0 74 chain 3441 chr14 107349540 + 39968349 39968512 MER5B 177 - 41 155 216354 12 14 21 25 86 30 26 chain 12862 chr14 107349540 + 39979229 39979492 L1PB1 5432 + 4813 5422 148789 10 0 12 105 69 406 27 1 0 18 1 0 13 1 0 18 chain 166268 chr14 107349540 + 39980053 39981881 L1PA3long 6157 + 4328 6157 22489 7 0 2 120 1 0 1700 chain 17256 chr14 107349540 + 39985881 39986092 L1PA16 3655 + 1727 1937 134909 68 1 0 142 chain 149453 chr14 107349540 + 39986126 39987775 L1PA3long 6157 - 0 1642 24693 142 1 0 153 6 0 1347 chain 526825 chr14 107349540 + 39990763 39996660 L1PA3long 6157 - 0 6157 4518 2037 0 3 172 0 1 684 0 1 88 1 0 845 1 0 377 0 1 1044 8 136 233 0 126 44 0 1 211 0 1 152 chain 41035 chr14 107349540 + 39997212 39997700 L1PA7 6471 + 5961 6452 67849 29 0 3 67 0 1 138 1 0 253 chain 12621 chr14 107349540 + 40003367 40003562 MER31A 484 + 178 383 149768 62 20 27 102 1 4 10 chain 169060 chr14 107349540 + 40019402 40021336 L1PA4 6152 - 0 1929 22164 65 4 0 76 3 0 5 2 0 10 12 17 829 1 0 927 chain 48845 chr14 107349540 + 40021336 40021885 L1P1 4361 + 3749 4297 59592 402 1 0 146 chain 45445 chr14 107349540 + 40029619 40030124 L1PA3long 6157 + 5587 6094 62552 419 0 2 86 chain 53608 chr14 107349540 + 40033960 40034634 L1PA7 6471 - 7 693 56609 145 21 22 239 13 24 256 chain 539192 chr14 107349540 + 40053472 40059495 L1PA3long 6157 - 1 6156 2950 4 1 0 772 0 2 64 0 4 2098 13 6 23 1 0 2000 0 4 115 0 1 159 0 128 65 0 1 557 1 2 150 chain 90783 chr14 107349540 + 40063345 40064468 L1PA7 6471 - 2362 3495 39334 12 1 2 203 7 8 264 0 1 42 2 0 24 0 4 46 1 0 93 0 2 16 0 4 412 chain 192200 chr14 107349540 + 40064468 40066780 L1PA7 6471 + 4145 6470 19848 275 1 0 132 0 1 218 0 9 438 0 1 396 0 5 218 0 5 458 21 7 9 1 8 145 chain 89839 chr14 107349540 + 40068174 40069313 L1P3 4156 + 2988 4135 39710 61 0 4 40 0 4 240 11 2 7 0 10 178 0 1 429 0 1 142 2 0 7 2 1 20 chain 37225 chr14 107349540 + 40077213 40077804 L1MA3 4352 - 26 588 73201 11 2 1 26 12 10 18 14 12 39 0 1 28 1 0 61 51 26 29 1 0 4 0 1 128 0 1 166 chain 94192 chr14 107349540 + 40093133 40094353 L1PA10 4194 - 44 1268 38303 4 0 1 28 4 1 112 0 7 44 0 2 120 3 7 291 8 0 323 6 9 222 1 0 23 1 0 30 chain 95000 chr14 107349540 + 40098428 40099442 L1HS 6032 - 6 1020 38096 1014 chain 69227 chr14 107349540 + 40099442 40100210 L1P1 4361 + 3191 3959 48675 768 chain 532788 chr14 107349540 + 40102752 40108880 L1PA4 6152 - 9 6152 3877 1288 0 1 18 0 3 198 1 2 528 0 5 161 0 1 989 0 1 48 4 5 735 0 1 45 1 0 299 1 8 259 0 1 513 1 0 268 11 5 48 4 5 708 chain 2883 chr14 107349540 + 40109139 40109174 MER57B2 428 + 279 314 227328 35 chain 547432 chr14 107349540 + 40125120 40131234 L1PA3long 6157 + 39 6155 1776 697 1 0 350 0 3 641 0 1 966 1 0 3458 chain 89122 chr14 107349540 + 40162303 40163385 L1PA7 6471 + 5388 6468 39954 233 1 0 80 24 21 314 1 2 300 0 1 129 chain 548954 chr14 107349540 + 40166796 40172937 L1PA3long 6157 - 0 6151 1583 918 6 7 7 1 0 864 0 4 307 0 1 1804 0 1 93 0 4 2141 chain 38244 chr14 107349540 + 40173061 40173666 L1PB3 3668 - 288 894 71779 25 9 7 50 8 7 102 1 0 102 24 23 55 4 0 18 30 29 49 0 11 128 chain 21215 chr14 107349540 + 40176466 40176706 L1PA5 6144 + 5786 6027 123156 26 0 1 214 chain 3431 chr14 107349540 + 40210228 40210291 L1MA3 4352 + 4248 4308 216545 12 2 0 22 7 6 20 chain 29744 chr14 107349540 + 40211995 40212376 L1MA3 4352 - 3807 4200 85680 116 0 1 253 0 11 12 chain 34214 chr14 107349540 + 40232125 40232603 LTR2B 499 - 0 499 77333 42 14 13 311 2 14 12 1 0 32 15 27 34 1 0 14 chain 283216 chr14 107349540 + 40247127 40251118 L1PBa1 4058 - 13 3941 14453 7 3 0 40 1 0 16 1 0 10 1 0 5 17 14 12 1 0 22 1 0 4 2 1 20 2 0 11 2 0 5 9 3 4 1 0 14 19 17 49 1 0 49 2 0 41 1 0 29 1 0 6 1 0 78 11 20 19 2 1 55 29 11 39 14 13 303 0 5 47 0 1 311 0 2 92 1 0 207 3 0 4 10 0 198 4 0 370 0 1 140 0 1 81 8 7 62 0 10 11 1 2 119 18 0 73 42 32 49 1 2 7 1 0 99 3 4 87 1 0 223 0 3 218 5 7 21 15 13 75 0 2 102 0 3 4 2 1 91 15 15 88 1 0 60 1 0 60 chain 30223 chr14 107349540 + 40276901 40277408 MLT2A1 477 - 0 471 84123 44 7 0 6 76 51 65 2 1 136 9 6 162 chain 503294 chr14 107349540 + 40289245 40295363 L1PA6 6164 - 5 6164 6653 5 3 0 7 1 0 130 28 33 571 1 4 87 0 4 415 5 4 500 6 7 489 0 2 198 2 0 167 0 1 105 10 9 25 1 0 4 0 1 120 0 6 46 1 3 31 2 3 848 5 0 60 2 0 8 0 2 411 0 1 103 1 3 235 0 1 55 0 2 24 10 7 403 1 0 197 0 17 61 7 8 485 1 10 241 chain 38021 chr14 107349540 + 40345666 40346143 LTR2B 499 - 0 494 72096 180 1 0 10 0 1 178 0 19 37 3 0 61 0 1 7 chain 31423 chr14 107349540 + 40362405 40362873 MLT2A1 477 + 1 475 81778 43 54 12 86 0 1 25 1 5 151 1 0 69 0 44 38 chain 455867 chr14 107349540 + 40362875 40368456 HERVL-int 5654 + 0 5654 8548 641 0 1 13 1 0 283 1 6 88 0 1 91 2 0 289 1 2 363 1 0 5 0 1 97 2 12 364 0 1 564 1 5 795 0 1 61 17 29 700 0 1 321 0 4 27 1 7 334 0 16 162 0 3 146 0 1 8 0 5 158 0 4 44 chain 29594 chr14 107349540 + 40368456 40368834 MLT2A1 477 + 0 382 86226 142 1 2 24 1 5 150 1 0 59 chain 22058 chr14 107349540 + 40377472 40377730 AluY 311 + 39 296 119977 94 1 0 163 chain 328095 chr14 107349540 + 40390714 40394335 L1PA3long 6157 - 1 3622 12272 676 1 0 1535 0 1 1409 chain 193502 chr14 107349540 + 40397297 40399538 L1PA5 6144 - 12 2249 19732 101 1 0 222 1 0 309 0 5 196 0 1 4 1 0 896 13 0 53 6 10 321 0 1 70 0 1 47 chain 165386 chr14 107349540 + 40404612 40406404 L1PA2 6032 + 4239 6031 22605 1792 chain 51389 chr14 107349540 + 40411002 40411579 L1PA4 6152 - 1 580 58036 147 0 1 231 0 1 199 chain 64211 chr14 107349540 + 40411579 40412274 L1PA4 6152 + 4845 5540 50909 695 chain 43534 chr14 107349540 + 40419558 40420039 L1PA4 6152 - 1 482 64761 481 chain 51977 chr14 107349540 + 40421304 40421920 L1PA10 4194 + 3466 4082 57634 616 chain 114524 chr14 107349540 + 40431190 40432681 L1PB1 5432 + 3017 4508 32942 336 0 3 209 0 1 136 8 8 15 8 0 170 0 1 545 6 5 29 0 4 29 chain 5540 chr14 107349540 + 40452517 40452576 L1PA4 6152 + 6086 6145 189658 59 chain 221240 chr14 107349540 + 40461565 40464703 L1PA11 4918 - 351 3481 17798 13 6 5 10 31 22 13 1 0 16 1 0 14 2 0 63 6 4 13 2 1 65 5 0 114 7 8 501 19 9 72 0 1 106 0 2 69 1 0 19 3 1 329 0 1 16 0 1 136 3 1 124 2 4 101 2 1 94 33 0 8 6 40 27 3 0 5 4 5 101 7 19 104 0 1 49 10 14 140 1 0 4 0 1 112 6 5 7 0 1 26 1 9 76 3 0 50 1 2 265 1 3 5 2 0 102 chain 27212 chr14 107349540 + 40470127 40470425 AluYf5 307 + 0 301 95554 58 0 3 240 chain 14544 chr14 107349540 + 40476062 40476250 MLT2A2 560 + 0 190 142742 13 0 3 164 1 0 10 chain 323724 chr14 107349540 + 40476436 40480612 HERVL-int 5654 + 1339 5547 12454 218 1 0 26 0 1 68 0 4 139 13 11 22 12 7 203 0 1 248 4 1 400 0 1 92 0 9 290 0 3 75 3 4 172 0 2 161 1 2 268 0 1 768 2 11 123 0 1 214 0 1 114 0 1 9 0 1 111 0 2 25 5 6 347 4 6 10 0 1 28 chain 104688 chr14 107349540 + 40491493 40492638 L1PA4 6152 - 9 1154 35568 1145 chain 5998 chr14 107349540 + 40510241 40510341 MLT2C1 407 + 0 102 185264 38 17 19 45 chain 9116 chr14 107349540 + 40510967 40511199 Tigger3c 601 + 331 569 164986 13 1 0 23 0 10 7 2 0 72 30 0 9 48 77 27 chain 27945 chr14 107349540 + 40516620 40517010 THE1C-int 1605 - 7 403 93189 22 3 4 5 2 0 45 10 11 289 1 7 13 chain 44111 chr14 107349540 + 40528125 40528693 PABL_A 660 - 2 589 64073 182 0 1 35 0 1 92 0 8 237 10 19 12 chain 143410 chr14 107349540 + 40550961 40552877 L1PA11 4918 + 2590 4504 25576 130 1 0 341 0 3 498 1 0 98 3 0 229 0 8 284 1 6 26 3 0 118 1 0 3 4 0 59 2 1 13 1 0 14 7 0 6 0 7 40 2 0 15 1 0 15 chain 290704 chr14 107349540 + 40554800 40558441 L1PA7 6471 - 15 4028 13979 80 8 0 7 1 9 515 0 1 223 1 0 140 0 1 116 0 1 153 9 7 219 1 2 557 0 5 574 0 1 16 2 0 205 0 1 4 1 0 24 0 435 60 0 4 401 47 1 53 27 0 160 0 1 37 chain 111389 chr14 107349540 + 40558442 40559849 L1PA7 6471 + 1029 2446 33839 89 7 9 269 1 4 197 0 3 134 7 8 43 0 1 475 1 0 103 0 1 81 chain 51830 chr14 107349540 + 40565120 40565733 L1PA7 6471 - 4 603 57733 463 14 0 136 chain 196716 chr14 107349540 + 40572346 40575052 L1PA8A 6298 + 3787 6284 19449 91 1 2 84 175 3 163 0 1 8 3 0 186 0 1 369 1 0 128 1 2 246 4 3 351 33 4 60 2 6 68 0 1 11 1 2 188 0 1 212 3 0 190 12 1 115 chain 27048 chr14 107349540 + 40583597 40583891 AluYa5 310 - 16 310 96115 294 chain 165630 chr14 107349540 + 40610611 40612507 L1P1 4361 - 60 1955 22563 150 1 0 1449 26 26 270 chain 60098 chr14 107349540 + 40612507 40613200 L1PA5 6144 + 5443 6143 52698 434 7 14 252 chain 5356 chr14 107349540 + 40621077 40621142 MER57B1 401 - 336 401 191478 65 chain 20363 chr14 107349540 + 40624490 40624819 THE1B 368 - 15 368 126019 103 42 52 24 1 0 109 6 21 44 chain 61197 chr14 107349540 + 40625845 40626659 THE1B-int 1605 - 729 1578 52253 97 18 26 287 9 34 309 0 1 4 3 4 87 chain 140145 chr14 107349540 + 40642876 40644427 L1PA4 6152 - 9 1565 26121 329 0 2 61 0 3 1161 chain 26323 chr14 107349540 + 40667861 40668153 L1PA2 6032 + 5740 6032 98726 292 chain 61267 chr14 107349540 + 40672095 40672949 LTR12D 1347 - 8 940 52224 108 0 35 45 1 3 66 1 0 30 5 4 25 8 4 112 3 0 50 0 1 13 0 1 126 0 17 105 9 8 19 0 31 76 3 4 49 chain 69295 chr14 107349540 + 40685492 40686557 LTR12D 1347 - 0 1347 48686 74 0 2 168 0 1 4 1 0 5 0 97 117 1 0 4 0 1 139 1 0 4 3 195 100 2 3 89 78 39 24 49 79 202 chain 28011 chr14 107349540 + 40735172 40735491 L1PA4 6152 - 665 985 92962 103 0 1 216 chain 55509 chr14 107349540 + 40735503 40736144 L1PA4 6152 + 5504 6152 55410 532 2 3 10 0 1 91 0 5 6 chain 371890 chr14 107349540 + 40742911 40748344 L1PB1 5432 - 8 5393 11027 4 1 0 16 1 0 13 1 0 21 1 0 24 3 1 13 8 5 16 51 40 34 2 1 14 1 0 54 2 0 10 16 11 9 1 0 24 13 11 20 0 4 115 1 4 158 4 0 5 2 0 34 216 7 126 5 0 421 1 0 251 15 17 73 2 1 131 0 3 30 0 1 56 28 27 170 0 1 39 1 2 278 0 3 279 1 199 14 0 5 18 19 24 58 5 6 28 9 0 327 0 1 439 3 0 310 31 16 9 1 0 170 1 9 131 2 1 609 1 0 12 6 7 42 0 1 10 1 0 362 chain 15217 chr14 107349540 + 40743643 40743819 L1PB 1623 - 526 704 139434 72 0 1 39 0 1 65 chain 142233 chr14 107349540 + 40759459 40761077 L1PA4 6152 - 25 1634 25771 69 0 1 55 0 1 640 10 0 732 1 0 111 chain 21828 chr14 107349540 + 40786690 40787022 THE1B 368 + 16 368 120906 160 19 16 6 0 3 10 1 5 12 4 12 56 0 7 7 1 2 56 chain 166665 chr14 107349540 + 40789866 40791889 L1PA7 6471 + 4435 6458 22439 105 4 0 81 1 0 29 1 2 16 0 4 278 10 9 646 0 1 187 1 0 505 12 13 147 chain 551445 chr14 107349540 + 40795411 40801415 L1PA2 6032 + 2 6021 1260 383 0 1 2554 0 3 1570 0 10 127 0 1 1370 chain 44131 chr14 107349540 + 40804205 40805180 MER4A1_ 611 - 0 611 64039 25 0 2 37 46 6 47 5 4 4 0 1 191 17 0 164 23 8 8 299 0 92 0 5 17 chain 544848 chr14 107349540 + 40817262 40823284 L1PA2 6032 + 0 6026 2092 257 1 0 311 0 4 298 3 0 48 1 0 11 1 2 1454 0 1 1174 2 1 721 0 3 585 0 1 1155 chain 120184 chr14 107349540 + 40828070 40829620 THE1B-int 1605 + 0 1599 30995 98 1 0 332 0 25 298 18 13 214 0 28 411 1 2 72 0 1 105 chain 164028 chr14 107349540 + 40847561 40849434 L1P1 4361 - 20 1893 22805 12 2 1 23 1 0 155 0 2 1680 chain 136469 chr14 107349540 + 40849434 40850995 L1P1 4361 + 895 2459 26731 470 0 1 1003 0 2 88 chain 20034 chr14 107349540 + 40875405 40875674 THE1B 368 - 97 368 127032 107 1 0 121 1 6 24 3 1 12 chain 142515 chr14 107349540 + 40891624 40893177 L1PA3long 6157 - 494 2047 25725 1553 chain 43712 chr14 107349540 + 40893177 40893661 L1PA3long 6157 + 5673 6157 64554 484 chain 9336 chr14 107349540 + 40894129 40894290 MLT2C1 407 + 46 208 163876 93 30 31 38 chain 18403 chr14 107349540 + 40943978 40944207 THE1A 353 - 12 241 131777 229 chain 49915 chr14 107349540 + 41013466 41014009 L1PA3long 6157 + 5606 6149 59079 543 chain 2902 chr14 107349540 + 41016703 41016734 L1MD2 1676 + 1623 1654 227009 31 chain 80717 chr14 107349540 + 41033714 41034671 L1PA5 6144 - 9 964 43299 209 10 9 623 1 0 114 chain 21463 chr14 107349540 + 41034671 41034925 L1P2 5180 - 3051 3304 121327 98 1 0 155 chain 54229 chr14 107349540 + 41061075 41061743 L1PA7 6471 + 5807 6466 56206 59 0 1 28 2 0 380 12 6 17 0 1 160 3 0 7 chain 36651 chr14 107349540 + 41075259 41075693 L1PA6 6164 - 2 432 74022 6 5 0 166 0 1 257 chain 341297 chr14 107349540 + 41076214 41080408 L1PA7 6471 - 324 4536 11859 294 0 1 201 16 7 12 8 11 66 7 8 21 1 0 413 9 52 39 19 0 270 0 4 745 2 0 416 0 2 87 0 1 569 0 1 150 0 1 144 10 0 283 1 2 399 0 1 12 chain 54210 chr14 107349540 + 41098732 41099408 LTR12C 1709 - 1030 1709 56222 68 0 1 32 2 1 141 0 1 133 0 1 5 0 1 4 4 0 8 0 4 279 chain 30347 chr14 107349540 + 41109053 41109412 L1PA4 6152 + 5786 6152 83781 14 0 1 97 1 0 6 2 4 233 0 5 6 chain 49560 chr14 107349540 + 41145012 41145842 L1PB1 5432 - 8 796 59351 4 1 0 16 1 0 9 12 11 11 1 0 26 3 1 14 12 9 10 9 0 12 2 0 5 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 13 1 0 20 3 0 3 6 0 6 2 1 107 4 3 28 0 1 329 chain 58176 chr14 107349540 + 41145842 41146596 L1PB1 5432 + 3927 4635 53887 29 2 0 241 42 1 430 3 0 7 chain 63577 chr14 107349540 + 41163584 41164356 LTR17 781 - 8 781 51200 54 9 10 381 0 1 22 10 0 177 0 9 119 chain 156936 chr14 107349540 + 41188020 41189734 L1HS 6032 - 3378 5092 23735 1714 chain 119460 chr14 107349540 + 41197908 41199190 L1HS 6032 - 0 1282 31239 1282 chain 49435 chr14 107349540 + 41199190 41199719 L1HS 6032 + 4208 4737 59301 529 chain 239910 chr14 107349540 + 41222079 41225845 L1PA11 4918 - 340 4910 16782 11 2 0 13 1 0 15 44 31 20 4 3 11 2 0 66 2 1 12 1 0 63 0 14 8 25 10 45 25 10 206 6 5 178 0 1 110 3 4 199 4 1 6 6 0 9 1 5 698 14 15 5 1 0 89 0 1 172 0 1 90 67 1089 153 4 5 140 1 0 314 18 18 167 82 83 47 0 2 17 171 0 21 0 1 76 1 0 101 5 3 33 1 0 50 2 0 15 1 0 35 3 0 38 3 1 33 chain 8427 chr14 107349540 + 41225283 41225387 L1PA11 4918 - 4531 4634 168700 70 1 0 33 chain 10650 chr14 107349540 + 41246726 41246950 L1PB1 5432 + 5202 5404 157604 18 2 1 15 1 0 45 1 0 15 1 0 4 2 0 8 9 0 19 24 19 24 1 0 21 1 0 13 chain 126046 chr14 107349540 + 41269547 41271112 THE1A-int 1579 - 0 1579 29084 311 0 1 224 5 6 102 1 0 288 0 8 197 0 2 395 2 3 25 0 2 15 chain 84629 chr14 107349540 + 41287231 41288210 L1PA6 6164 - 2 983 41672 168 0 2 243 0 1 60 2 1 506 chain 112737 chr14 107349540 + 41294172 41295538 L1PA6 6164 + 4785 6159 33464 287 3 1 152 0 1 70 2 1 57 6 11 322 2 1 61 0 1 165 0 7 232 2 0 5 chain 70399 chr14 107349540 + 41304711 41305481 L1PA3long 6157 + 5387 6157 48215 770 chain 45555 chr14 107349540 + 41314982 41315505 L1PA5 6144 - 7 532 62452 49 0 1 85 0 1 389 chain 23405 chr14 107349540 + 41331735 41332018 AluY 311 + 17 300 113620 101 1 0 8 0 1 173 chain 56580 chr14 107349540 + 41333562 41334301 MER4E1 777 + 0 770 54802 22 8 11 256 5 6 38 0 19 81 0 1 109 1 8 219 chain 2799 chr14 107349540 + 41366861 41366924 L1MA4A 3247 - 586 648 228749 15 19 18 29 chain 37075 chr14 107349540 + 41367020 41367436 L1PA3long 6157 - 0 415 73421 142 1 0 273 chain 53486 chr14 107349540 + 41392146 41392728 L1PA2 6032 - 0 582 56691 582 chain 194682 chr14 107349540 + 41396461 41398703 L1PA5 6144 - 1 2245 19609 1548 0 1 371 5 0 158 5 9 104 1 3 50 chain 26462 chr14 107349540 + 41416645 41416944 L1PA5 6144 - 23 322 98195 299 chain 3728 chr14 107349540 + 41416944 41416989 L1P2 5180 + 879 924 206490 45 chain 541735 chr14 107349540 + 41418121 41424139 L1PA3long 6157 - 2 6156 2553 785 1 0 56 0 4 1254 0 3 2096 0 1 151 0 1 898 1 129 466 1 0 158 0 1 151 chain 81655 chr14 107349540 + 41460217 41461298 L1PA7 6471 - 2 1102 42907 148 4 5 184 0 1 366 1 11 52 0 2 79 5 4 18 5 10 129 4 5 86 chain 63600 chr14 107349540 + 41461298 41462101 L1P3 4156 + 2909 3711 51117 583 0 1 33 2 1 15 1 0 25 3 0 11 0 3 130 chain 99382 chr14 107349540 + 41483972 41485210 L1PA7 6471 + 5228 6469 36933 111 0 3 280 0 2 535 2 0 310 chain 32737 chr14 107349540 + 41485454 41485871 LTR30 714 - 297 714 79633 162 1 6 20 0 2 5 8 0 65 0 2 89 1 0 66 chain 9697 chr14 107349540 + 41533079 41533182 L1PA4 6152 + 6048 6151 162095 103 chain 5126 chr14 107349540 + 41533190 41533266 MSTA 426 + 355 425 193815 11 0 1 7 7 0 51 chain 20110 chr14 107349540 + 41584869 41585112 L1PA7 6471 + 6217 6461 126796 104 1 2 138 chain 13222 chr14 107349540 + 41597763 41597943 L1PA7 6471 - 1 172 147385 12 2 1 133 9 1 24 chain 30764 chr14 107349540 + 41598601 41599019 HSMAR1 1287 - 870 1287 82929 33 4 0 8 7 11 239 1 0 126 chain 73733 chr14 107349540 + 41603122 41603983 L1PA4 6152 + 5281 6137 46654 670 8 0 19 1 4 163 chain 118954 chr14 107349540 + 41608763 41610116 L1PA5 6144 - 0 1365 31436 233 1 12 700 0 1 419 chain 9685 chr14 107349540 + 41623097 41623220 LTR12C 1709 - 791 913 162174 81 1 0 41 chain 78222 chr14 107349540 + 41628579 41629474 L1PA5 6144 + 5245 6141 44403 645 1 2 249 chain 18605 chr14 107349540 + 41654184 41654474 THE1B 368 - 12 368 131209 63 1 0 65 42 109 119 chain 275178 chr14 107349540 + 41663576 41666611 L1PA3long 6157 + 3118 6152 14915 1523 1 0 1182 0 1 313 1 0 15 chain 49867 chr14 107349540 + 41677303 41677953 LTR12 884 - 15 884 59106 110 1 9 5 0 2 16 0 103 246 2 0 40 0 1 62 0 1 99 0 107 43 1 0 25 chain 542598 chr14 107349540 + 41678541 41684543 L1PA2 6032 - 1 6009 2406 340 0 1 1067 0 1 109 1 2 145 0 1 4 1 0 1318 2 1 776 0 4 421 0 1 921 2 1 895 chain 451787 chr14 107349540 + 41703526 41709149 HERVL-int 5654 - 0 5654 8707 111 0 3 198 0 6 634 8 7 51 0 1 699 15 11 381 2 0 158 0 1 481 2 1 270 1 5 366 1 0 362 0 1 83 1 0 4 0 1 708 3 6 160 0 1 4 3 2 63 0 5 791 10 26 53 chain 9836 chr14 107349540 + 41711914 41712037 THE1C 375 - 2 124 161412 23 1 0 99 chain 18610 chr14 107349540 + 41740660 41740875 L1PA5 6144 - 8 227 131191 206 0 4 9 chain 98537 chr14 107349540 + 41747409 41748607 L1PA7 6471 - 67 1269 37143 221 4 8 558 6 0 165 0 1 37 0 5 207 chain 21662 chr14 107349540 + 41755672 41755930 L1PA7 6471 - 6 264 121536 258 chain 97126 chr14 107349540 + 41759425 41760516 L1PA4 6152 - 9 1104 37532 766 1 2 78 0 3 246 chain 118164 chr14 107349540 + 41779997 41781855 THE1A-int 1579 + 7 1574 31742 175 2 1 56 0 1 28 0 3 44 2 1 128 0 1 175 0 17 22 342 57 8 27 0 237 0 1 612 chain 26533 chr14 107349540 + 41781860 41782215 THE1A 353 + 0 353 97919 111 1 0 90 0 1 4 10 8 139 chain 494595 chr14 107349540 + 41793581 41799700 L1PA6 6164 - 3 6164 7135 8 2 0 327 1 0 639 6 5 539 2 0 235 6 8 298 0 17 389 1 0 506 0 1 393 0 1 394 0 1 64 5 6 602 2 0 731 0 1 93 5 6 64 9 26 199 1 0 39 7 6 114 8 0 132 0 19 298 chain 52174 chr14 107349540 + 41801715 41802425 THE1A-int 1579 - 5 1579 57516 172 20 3 255 1 2 76 0 842 53 1 0 31 0 39 101 chain 255175 chr14 107349540 + 41804241 41807063 L1PA3long 6157 - 0 2836 15975 1362 4 3 486 0 15 970 chain 183440 chr14 107349540 + 41807067 41809124 L1HS 6032 + 1129 3187 20636 713 0 1 1344 chain 24067 chr14 107349540 + 41810525 41810894 THE1C 375 - 0 367 109945 134 0 1 9 55 52 171 chain 81425 chr14 107349540 + 41811233 41812247 L1PA8 5853 - 165 1178 43002 7 1 0 73 2 0 44 1 0 385 0 3 58 8 1 41 0 1 44 4 5 12 0 5 334 chain 28227 chr14 107349540 + 41827476 41827829 THE1A 353 + 2 353 92206 108 1 0 92 1 0 151 chain 103988 chr14 107349540 + 41840463 41841639 L1PA5 6144 - 4 1181 35736 328 0 1 792 0 1 4 1 0 51 chain 22327 chr14 107349540 + 41841639 41841903 L1PA5 6144 + 4693 4959 117244 19 5 6 60 0 1 180 chain 71278 chr14 107349540 + 41865031 41865846 L1PA5 6144 + 5325 6139 47813 320 0 1 35 5 3 455 chain 47207 chr14 107349540 + 41884662 41886106 L1PB1 5432 + 4650 5424 61038 155 10 10 149 642 0 139 2 3 8 1 0 24 27 21 10 10 8 42 1 0 18 1 0 44 1 0 15 1 0 4 43 33 13 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 44233 chr14 107349540 + 41885012 41885618 LTR66 600 - 31 600 63909 53 0 1 58 17 0 48 0 6 51 27 0 172 1 0 80 0 1 99 chain 9993 chr14 107349540 + 41895220 41895368 LTR8 732 - 0 150 160614 43 17 19 88 chain 5364 chr14 107349540 + 41955886 41955967 Tigger1 2417 - 2314 2385 191395 60 10 0 11 chain 65476 chr14 107349540 + 41961420 41962124 L1PA3long 6157 + 5453 6157 50346 704 chain 287245 chr14 107349540 + 41962660 41966467 L1PA8 5853 + 2044 5853 14205 323 4 5 109 0 4 403 1 0 69 0 5 34 9 10 120 0 1 258 1 0 9 13 11 44 0 1 131 0 1 24 0 4 549 0 3 36 21 18 118 3 0 16 13 3 498 1 6 149 9 12 59 0 1 144 6 5 337 1 0 44 2 0 68 16 14 50 24 22 91 chain 4686 chr14 107349540 + 41985021 41985073 LTR47A 437 - 49 101 198685 52 chain 39909 chr14 107349540 + 41985073 41985523 LTR7 482 + 0 482 69442 25 0 1 206 0 31 219 chain 324141 chr14 107349540 + 41985525 41989400 HERVH-int 3825 + 0 3825 12431 130 0 9 396 5 0 35 1 0 9 2 1 24 28 0 15 45 0 12 3 0 14 8 6 5 1 0 73 2 1 48 0 1 450 16 1 89 0 20 79 5 0 263 9 35 2090 0 1 18 chain 40070 chr14 107349540 + 41990633 41991084 LTR7 482 + 0 482 69223 246 0 31 205 chain 3071 chr14 107349540 + 41991084 41991118 LTR47A 437 - 94 128 223554 34 chain 25157 chr14 107349540 + 41995587 41995929 L1PA8 5853 - 702 1043 103970 60 1 0 4 3 4 72 8 7 194 chain 26382 chr14 107349540 + 41995929 41996300 L1PA8 5853 + 5192 5564 98486 131 9 10 231 chain 3904 chr14 107349540 + 41996301 41996345 L1PA8 5853 + 5564 5608 208786 44 chain 18546 chr14 107349540 + 41996347 41996596 L1PA8 5853 + 5608 5853 131367 71 1 0 13 1 0 48 2 1 19 2 1 92 chain 78848 chr14 107349540 + 42009621 42010667 MER11C 1089 - 26 1089 44127 25 0 1 117 1 0 12 0 1 43 0 1 118 1 2 5 0 1 38 1 0 4 1 5 112 17 15 177 1 0 65 0 4 61 0 9 247 chain 5526 chr14 107349540 + 42014693 42014756 L1PA8 5853 + 5790 5853 189778 63 chain 29083 chr14 107349540 + 42023905 42024211 AluYa5 310 - 4 310 88620 306 chain 7928 chr14 107349540 + 42035633 42035718 L1PA4 6152 - 595 680 171455 85 chain 52708 chr14 107349540 + 42035718 42036310 L1PA4 6152 + 5546 6143 57185 189 0 1 360 0 4 43 chain 24901 chr14 107349540 + 42038903 42039251 THE1C 375 - 23 375 105340 42 0 3 9 8 0 7 0 8 89 7 8 186 chain 102873 chr14 107349540 + 42051579 42052801 L1PA4 6152 - 6 1240 36030 5 3 0 322 2 3 61 11 0 15 7 31 665 0 1 131 chain 8971 chr14 107349540 + 42059181 42059399 MLT1A0 366 - 69 285 165773 51 7 0 7 80 85 73 chain 8064 chr14 107349540 + 42060154 42060270 L1PA13 3608 + 2745 2856 170672 21 8 3 87 chain 3216 chr14 107349540 + 42065590 42065626 MER66A 478 - 43 79 220645 36 chain 32054 chr14 107349540 + 42066933 42067290 HERV-Fc1_LTR2 425 + 34 391 80773 357 chain 36414 chr14 107349540 + 42068871 42069372 LTR7 482 - 0 482 74349 49 13 14 110 0 1 23 2 0 24 0 31 52 51 0 84 0 1 93 chain 9868 chr14 107349540 + 42092536 42092658 THE1D 372 + 246 368 161245 122 chain 21779 chr14 107349540 + 42123163 42123413 L1PA5 6144 + 5896 6142 121104 239 4 0 7 chain 77132 chr14 107349540 + 42128266 42129220 L1PA7 6471 - 10 970 44898 141 1 2 623 0 1 64 0 6 10 3 1 66 1 0 7 0 1 38 chain 141129 chr14 107349540 + 42142256 42144843 SVA_D 2077 - 337 2060 25965 301 0 1 37 24 21 23 1 0 127 99 0 151 0 51 70 25 14 26 2 0 9 2 0 77 795 0 777 5 0 13 0 4 10 1 0 6 1 0 5 chain 7796 chr14 107349540 + 42142769 42142867 SVA_D 2077 - 974 1074 89186 65 0 2 33 chain 2235 chr14 107349540 + 42143230 42143257 SVA_D 2077 - 1438 1465 228567 27 chain 5810 chr14 107349540 + 42143257 42143363 SVA_D 2077 - 706 812 143897 106 chain 36821 chr14 107349540 + 42143420 42143835 SVA_F 1814 - 523 953 73778 17 1 0 312 1 16 58 0 1 26 chain 4813 chr14 107349540 + 42143848 42143902 SVA_F 1814 - 867 921 197200 54 chain 128680 chr14 107349540 + 42154638 42156244 L1PA8A 6298 - 926 2541 28396 63 0 1 332 1 0 777 3 10 212 0 1 104 0 1 114 chain 24978 chr14 107349540 + 42161619 42161912 L1PA5 6144 - 0 292 104914 100 1 0 192 chain 2598 chr14 107349540 + 42176933 42177003 MER58A 224 + 51 119 231713 25 30 28 15 chain 29158 chr14 107349540 + 42179836 42180187 L1PA5 6144 - 12 372 88262 257 1 10 93 chain 80923 chr14 107349540 + 42204818 42205795 L1PA7 6471 - 9 996 43192 830 0 10 147 chain 158445 chr14 107349540 + 42205795 42207707 L1PA7 6471 + 3548 5468 23539 50 0 1 217 0 1 114 8 7 563 0 1 172 0 4 152 4 3 121 0 3 511 chain 19795 chr14 107349540 + 42220033 42220271 L1PA7 6471 - 7 245 127831 238 chain 536906 chr14 107349540 + 42220979 42227102 L1PA4 6152 - 11 6146 3324 775 0 1 119 2 1 1214 0 3 519 1 0 331 0 1 1620 0 1 107 1 0 35 0 9 1399 chain 74278 chr14 107349540 + 42261185 42262478 MER11A 1151 - 0 1151 46370 32 0 1 120 16 17 44 3 4 12 0 1 58 13 46 7 0 1 76 0 1 46 0 1 145 0 1 94 0 1 149 4 0 63 0 4 18 283 0 48 1 100 61 chain 21094 chr14 107349540 + 42262112 42262351 L1PA3long 6157 + 5908 6147 123570 239 chain 69264 chr14 107349540 + 42264337 42265126 L1PA5 6144 + 5341 6131 48699 365 0 1 424 chain 19451 chr14 107349540 + 42274621 42274851 L1PA3long 6157 - 1 242 128818 41 0 9 96 0 2 93 chain 8678 chr14 107349540 + 42274851 42274943 L1PA3long 6157 + 5822 5914 167316 92 chain 78580 chr14 107349540 + 42282419 42283462 L1PA8 5853 - 6 1095 44228 63 32 48 48 3 4 5 1 0 69 2 0 46 1 0 93 0 1 5 0 1 290 0 31 132 3 1 36 0 1 117 2 3 95 chain 17283 chr14 107349540 + 42323348 42323555 L1PA5 6144 - 176 389 134826 199 0 6 8 chain 12774 chr14 107349540 + 42323555 42323706 L1PA5 6144 + 5972 6126 149158 21 1 4 129 chain 27485 chr14 107349540 + 42325878 42326166 AluYd8 298 - 10 298 94697 288 chain 61246 chr14 107349540 + 42332888 42333687 L1PA7 6471 - 1 813 52230 161 1 2 12 9 9 4 1 0 114 0 10 25 2 0 31 0 3 137 0 1 291 0 1 11 chain 3035 chr14 107349540 + 42339363 42339400 MLT1E1 597 - 193 230 224302 37 chain 481382 chr14 107349540 + 42375525 42380899 L1PA3long 6157 - 0 6151 7674 458 0 2 233 1 0 1519 0 1 429 1 0 20 0 728 2056 6 0 293 0 1 52 0 1 166 0 52 140 chain 65187 chr14 107349540 + 42431760 42432571 L1PA6 6164 - 3 811 50481 185 3 1 266 4 0 316 1 3 25 0 1 11 chain 397933 chr14 107349540 + 42432989 42438142 L1P2 5180 - 2 5178 10172 4 1 0 38 1 0 47 1 0 83 8 13 327 0 1 208 15 1 353 1 3 285 12 10 116 0 1 395 0 1 48 8 12 43 1 0 429 1 2 439 1 0 89 2 7 238 5 3 153 0 1 178 0 1 308 1 2 255 1 4 282 2 17 218 1 0 32 26 25 60 8 0 126 31 49 27 1 0 44 8 7 43 1 0 148 chain 69435 chr14 107349540 + 42445576 42446363 L1PA4 6152 - 0 787 48635 787 chain 12930 chr14 107349540 + 42478936 42479083 L1PA5 6144 + 5996 6141 148500 138 2 0 7 chain 10918 chr14 107349540 + 42481076 42481356 L1PB1 5432 + 5168 5424 156533 52 2 1 16 1 0 44 11 1 12 79 71 5 1 0 21 1 0 11 1 0 18 1 0 4 chain 13096 chr14 107349540 + 42518259 42518408 L1PA4 6152 - 9 161 147861 96 0 3 53 chain 233298 chr14 107349540 + 42520966 42524087 HERVL-int 5654 + 0 5654 17126 511 18 1336 15 15 24 46 6 7 132 0 9 19 0 15 170 1 2 566 0 1173 109 2 1 5 0 1 306 8 6 301 4 7 27 1 0 33 0 1 71 1 4 42 2 0 82 1 2 266 0 3 18 11 12 332 chain 31887 chr14 107349540 + 42524087 42524498 MLT2A1 477 + 0 461 81033 169 1 5 207 0 4 13 0 42 21 chain 28718 chr14 107349540 + 42529257 42529582 L1PA5 6144 - 12 336 90253 100 1 0 224 chain 29828 chr14 107349540 + 42566140 42566462 AluYb8 318 + 0 318 85357 126 4 0 192 chain 5501 chr14 107349540 + 42582457 42582607 LTR12C 1709 - 627 777 190036 14 41 0 48 26 67 21 chain 67640 chr14 107349540 + 42587169 42588034 L1PB1 5432 - 2976 3879 49262 78 3 9 357 0 4 6 4 27 372 0 5 45 chain 203008 chr14 107349540 + 42588034 42591380 L1PB1 5432 + 2465 5419 18994 33 2 0 21 0 1 261 0 1 57 1 0 65 21 0 12 0 2 68 50 43 75 0 1 93 4 0 7 1 10 49 1 2 322 0 1 9 0 4 126 3 5 308 8 11 428 9 14 14 0 4 97 9 14 38 0 1 142 4 11 86 208 0 200 177 13 24 1 0 9 16 11 9 2 0 46 1 0 7 2 1 16 1 0 40 12 11 8 1 0 4 2 0 11 9 0 11 17 14 10 2 0 24 1 0 21 1 0 13 1 0 15 chain 25176 chr14 107349540 + 42600774 42601133 THE1C 375 - 11 375 103870 15 1 0 118 27 32 33 1 2 164 chain 141308 chr14 107349540 + 42620378 42621936 L1PA3long 6157 - 0 1562 25902 322 0 2 9 1 0 133 0 2 455 0 1 638 chain 143022 chr14 107349540 + 42621936 42623517 L1PA3long 6157 + 3002 4585 25649 186 0 1 755 0 1 640 chain 395169 chr14 107349540 + 42635235 42640172 L1PA7 6471 - 1 4904 10276 13 2 6 212 0 1 614 1 0 123 35 0 8 0 1 295 0 1 4 1 0 243 0 4 200 5 4 138 0 1 23 0 1 4 1 0 267 17 32 67 0 1 386 0 1 208 1 0 126 3 2 300 0 1 416 0 2 124 0 2 654 28 0 418 chain 245341 chr14 107349540 + 42674119 42676878 L1PA4 6152 - 12 2775 16496 6 1 0 1782 0 4 409 0 1 561 chain 42294 chr14 107349540 + 42704816 42705315 MER9a3 513 + 0 509 66276 307 1 5 138 0 6 53 chain 54235 chr14 107349540 + 42722201 42722836 L1PA7 6471 + 5818 6447 56201 320 0 1 168 8 1 139 chain 17780 chr14 107349540 + 42724492 42724691 L1PA4 6152 - 2212 2412 133477 176 0 1 23 chain 47176 chr14 107349540 + 42724691 42725207 L1PA4 6152 - 2413 2929 60927 516 chain 194224 chr14 107349540 + 42725207 42727387 L1PA4 6152 + 3965 6152 19654 83 0 1 559 0 14 759 8 0 771 chain 18559 chr14 107349540 + 42727607 42727851 L1PA5 6144 + 5900 6139 131332 43 0 1 28 17 10 12 0 1 144 chain 28440 chr14 107349540 + 42736164 42736724 MER57-int 2662 - 14 540 91424 23 3 0 23 29 23 23 3 0 8 1 0 5 10 9 17 28 14 67 22 16 9 5 0 9 11 16 18 1 2 33 2 0 131 0 1 79 chain 11592 chr14 107349540 + 42736724 42736857 L1PA4 6152 + 6019 6152 153925 133 chain 34532 chr14 107349540 + 42739815 42740788 L1PB1 5432 - 2 754 76859 8 2 0 18 1 0 13 1 0 21 1 0 16 91 73 41 8 7 14 1 0 51 2 0 9 9 120 92 2 5 29 338 28 179 1 3 25 chain 40863 chr14 107349540 + 42741487 42741979 L1PA7 6471 - 112 606 68078 73 1 0 4 1 4 413 chain 13143 chr14 107349540 + 42744970 42745134 L1P1 4361 - 20 182 147673 12 2 1 23 1 0 126 chain 23431 chr14 107349540 + 42745134 42745400 L1PA4 6152 + 5877 6143 113472 266 chain 474599 chr14 107349540 + 42748941 42754950 L1PA6 6164 - 3 6134 7892 455 1 0 210 0 4 717 0 7 82 0 1 269 0 1 165 15 7 184 0 1 252 6 1 237 0 117 261 6 7 695 1 2 152 0 2 774 0 1 92 4 0 20 0 1 180 0 1 314 0 2 123 0 17 141 0 1 96 5 4 115 19 0 35 1 0 4 23 24 111 14 16 230 chain 28189 chr14 107349540 + 42761091 42761398 AluYk11 308 + 0 305 92345 132 2 0 173 chain 81533 chr14 107349540 + 42766217 42767241 MER11C 1089 - 27 1081 42965 112 2 0 168 9 17 54 5 0 108 12 16 250 1 18 52 0 3 78 0 5 173 chain 3516 chr14 107349540 + 42769965 42770013 MADE1 96 - 3 51 215125 34 1 0 4 0 1 9 chain 37272 chr14 107349540 + 42776326 42776821 MER9a3 513 - 21 498 73131 57 0 1 174 30 11 234 chain 380808 chr14 107349540 + 42776834 42781568 HERVK9-int 4720 - 0 4684 10727 120 0 1 151 0 66 89 0 1 870 5 0 114 2 0 5 0 2 744 0 1 13 109 0 73 0 1 4 1 0 837 6 5 228 0 2 381 5 6 693 0 1 8 4 3 121 19 18 30 1 0 8 1 0 66 1 0 4 8 5 13 chain 39015 chr14 107349540 + 42782888 42783379 MER9a3 513 - 7 498 70726 39 2 1 32 0 1 11 0 1 163 1 0 243 chain 23990 chr14 107349540 + 42788828 42789090 AluYg6 310 - 0 258 110385 179 4 0 79 chain 9765 chr14 107349540 + 42800015 42800142 MER85 139 - 0 137 161771 38 1 11 88 chain 35348 chr14 107349540 + 42807005 42807432 LTR2 463 - 16 463 75734 258 7 27 162 chain 97316 chr14 107349540 + 42807432 42808590 Harlequin-int 5206 - 0 1182 37480 161 0 20 646 0 6 122 4 2 225 chain 17058 chr14 107349540 + 42821901 42822109 L1PA7 6471 + 6240 6448 135435 208 chain 21146 chr14 107349540 + 42828947 42829189 L1PA5 6144 + 5902 6144 123383 242 chain 55189 chr14 107349540 + 42835915 42836513 L1PA2 6032 - 384 982 55593 598 chain 34462 chr14 107349540 + 42836513 42836895 L1PA2 6032 + 5639 6021 76973 382 chain 21886 chr14 107349540 + 42849479 42849762 L1PA7 6471 + 6152 6433 120680 155 17 17 8 2 0 101 chain 3244 chr14 107349540 + 42852327 42852366 HSMAR2 1300 + 1008 1047 220132 39 chain 5351 chr14 107349540 + 42860960 42861292 L1MA7 2200 + 1581 1914 191526 23 1 0 26 240 242 42 chain 53243 chr14 107349540 + 42866650 42867294 L1PA7 6471 + 5824 6469 56862 13 0 1 631 chain 117099 chr14 107349540 + 42873934 42875313 L1PA6 6164 + 4772 6162 32091 288 0 11 327 1 0 66 1 0 306 1 2 54 0 1 335 chain 89178 chr14 107349540 + 42894972 42895954 L1PA3long 6157 - 8 990 39901 982 chain 101675 chr14 107349540 + 42895954 42897093 L1PA3long 6157 + 4024 5166 36350 336 0 4 231 1 0 571 chain 40242 chr14 107349540 + 42901470 42902010 L1PA7 6471 - 2891 3427 68958 38 0 1 44 1 0 11 1 2 187 4 0 85 1 0 113 7 0 6 0 7 42 chain 222153 chr14 107349540 + 42902015 42904812 L1PA7 6471 + 3643 6454 17750 180 9 6 123 0 17 25 0 1 124 0 1 262 0 1 64 2 1 351 0 1 184 10 11 270 6 0 9 0 6 69 6 0 264 0 3 689 30 29 120 chain 37436 chr14 107349540 + 42923605 42924167 MLT2A2 560 + 2 559 72913 181 16 15 84 35 35 14 2 1 195 3 0 32 chain 108059 chr14 107349540 + 42950775 42952154 LTR12C 1709 - 0 1709 34699 103 0 130 248 0 4 33 0 1 73 2 0 6 1 0 75 0 81 88 0 118 171 2 1 30 7 0 109 0 1 36 3 4 96 14 16 275 0 3 7 chain 168390 chr14 107349540 + 42969000 42970840 L1PA2 6032 - 4 1843 22240 772 1 0 1067 chain 24082 chr14 107349540 + 42977016 42977306 AluYf4 310 - 19 310 109861 80 5 6 205 chain 58215 chr14 107349540 + 42977306 42978233 L1PA14 3548 + 2384 3280 53856 22 12 5 41 0 1 84 10 9 27 0 2 95 1 8 11 2 1 248 20 15 47 2 0 5 6 9 100 32 27 8 22 0 72 1 0 59 chain 11335 chr14 107349540 + 42985578 42985832 LTR1B 797 - 549 789 154938 17 16 35 11 36 8 7 7 0 22 10 11 16 1 0 99 0 2 12 chain 40801 chr14 107349540 + 43001016 43001532 L1PA6 6164 + 5645 6162 68171 47 0 1 137 1 2 321 1 0 9 chain 26279 chr14 107349540 + 43029325 43029681 THE1A 353 - 0 353 98906 145 17 15 83 1 0 110 chain 91984 chr14 107349540 + 43035957 43037014 L1PA5 6144 - 4 1055 38974 432 0 2 197 9 1 419 chain 74254 chr14 107349540 + 43037015 43037848 L1PA5 6144 + 4219 5056 46383 130 0 4 703 chain 40519 chr14 107349540 + 43072241 43072700 L1PA5 6144 - 4 463 68567 137 0 1 117 1 0 204 chain 24887 chr14 107349540 + 43077699 43077994 AluYk4 311 + 0 296 105427 118 5 6 172 chain 158748 chr14 107349540 + 43113098 43115071 L1PA7 6471 - 5 2218 23491 9 1 0 690 1 0 150 0 3 622 8 7 33 1 0 249 0 239 16 6 7 76 0 1 111 chain 5145 chr14 107349540 + 43144501 43144562 L1M1 2793 + 2215 2276 193591 61 chain 15816 chr14 107349540 + 43156388 43156599 THE1C-int 1605 - 0 211 138908 70 5 4 4 0 1 132 chain 18767 chr14 107349540 + 43164329 43164536 L1PA3long 6157 - 8 215 130781 207 chain 5948 chr14 107349540 + 43189377 43189453 HSMAR2 1300 - 21 97 185700 76 chain 47688 chr14 107349540 + 43189470 43190104 PABL_A 660 - 20 657 60704 56 0 2 13 9 8 51 0 2 84 14 13 107 9 10 291 chain 33533 chr14 107349540 + 43197147 43197531 L1PA4 6152 + 5750 6136 78342 67 0 1 147 0 1 170 chain 3753 chr14 107349540 + 43225494 43225612 Tigger3a 397 - 124 255 211102 31 59 72 28 chain 21730 chr14 107349540 + 43233782 43234299 L1PA15 4387 - 35 537 121280 22 9 4 14 17 15 15 1 0 12 17 14 14 56 51 6 1 0 42 61 65 141 5 4 6 0 1 36 2 0 40 chain 263211 chr14 107349540 + 43240840 43244419 L1PA7 6471 + 2568 6461 15528 71 0 2 14 0 1 45 7 4 121 0 2 270 0 308 37 0 4 29 6 10 342 39 34 227 4 5 38 0 1 139 10 19 26 0 2 62 1 0 4 0 1 5 1 2 168 5 4 253 5 6 4 1 0 51 1 2 9 0 1 4 1 0 89 0 1 442 6 5 93 0 1 21 1 2 21 27 28 24 3 0 17 4 2 229 17 0 269 1 0 133 0 1 28 0 1 5 10 16 29 1 0 109 chain 127859 chr14 107349540 + 43248791 43250334 L1PA6 6164 - 2 1561 28605 146 9 13 163 3 8 167 0 1 29 0 1 318 0 4 663 0 1 45 chain 41015 chr14 107349540 + 43256811 43257286 L1P2 5180 - 3123 3598 67877 475 chain 8740 chr14 107349540 + 43257286 43257397 L1PA7 6471 + 6358 6469 166974 111 chain 5774 chr14 107349540 + 43269626 43269694 MSTB 430 - 332 400 187390 68 chain 107681 chr14 107349540 + 43274983 43276305 HERVK22-int 3844 + 0 1325 34803 15 1 2 5 1 0 9 10 7 338 0 5 571 0 1 372 chain 101204 chr14 107349540 + 43299248 43300393 L1PA5 6144 + 4983 6132 36465 291 0 1 4 0 1 86 0 2 764 chain 2967 chr14 107349540 + 43337944 43337978 MLT2B1 522 - 2 36 225739 34 chain 21552 chr14 107349540 + 43340714 43340993 L1PA3long 6157 + 5892 6157 121958 28 26 12 225 chain 10778 chr14 107349540 + 43344920 43345108 L1MA3 4352 + 4150 4328 157081 30 1 0 43 11 7 30 2 0 22 1 0 5 3 2 28 1 0 11 chain 55564 chr14 107349540 + 43351819 43352432 L1PA3long 6157 + 5544 6157 55375 613 chain 149200 chr14 107349540 + 43356963 43358763 L1PA7 6471 + 4676 6467 24728 309 1 0 506 23 7 125 0 7 4 0 1 832 chain 7714 chr14 107349540 + 43364383 43364473 L1PA8 5853 - 0 90 172836 90 chain 50825 chr14 107349540 + 43385274 43385966 L1PA8A 6298 + 5129 5801 58419 360 1 4 5 4 0 60 20 0 76 8 9 158 chain 4858 chr14 107349540 + 43408203 43408263 L1PB4 2604 + 2456 2516 196692 60 chain 466632 chr14 107349540 + 43423286 43428455 L1PA2 6032 - 3 6026 8169 1960 1 855 652 1 0 1242 0 1 898 1 2 163 1 0 250 chain 533967 chr14 107349540 + 43436714 43442757 L1PA3long 6157 - 5 6157 3706 10 3 2 2217 5 1 855 0 1 275 6 1 581 0 3 355 2 0 20 1 0 809 1 0 29 7 0 37 3 0 52 0 128 623 1 2 151 chain 47948 chr14 107349540 + 43466843 43467372 L1PA2 6032 - 0 531 60523 23 0 2 506 chain 184438 chr14 107349540 + 43467372 43469374 L1PA2 6032 + 3500 5502 20547 2002 chain 3993 chr14 107349540 + 43478090 43478218 LTR25 836 + 409 536 207484 26 12 41 17 49 19 24 chain 15930 chr14 107349540 + 43486151 43486325 L1PA4 6152 - 416 590 138576 174 chain 36916 chr14 107349540 + 43486325 43486740 L1PA4 6152 + 5727 6143 73637 90 0 1 325 chain 33316 chr14 107349540 + 43487352 43487791 MER4A1 472 - 9 472 78713 22 0 1 185 9 30 116 7 9 100 chain 548142 chr14 107349540 + 43531537 43537562 L1PA2 6032 + 0 6028 1686 3043 1 0 224 1 0 1911 0 1 328 0 1 187 0 1 147 0 1 66 0 1 117 chain 116746 chr14 107349540 + 43596988 43598330 L1PA4 6152 - 11 1356 32212 504 2 0 28 0 6 309 1 0 498 chain 31981 chr14 107349540 + 43602780 43603215 MLT2A1 477 + 12 476 80890 157 4 1 215 17 49 42 chain 4658 chr14 107349540 + 43604852 43605000 LTR12E 1234 - 440 506 198981 38 82 0 28 chain 36070 chr14 107349540 + 43653599 43654173 LTR9B 643 + 0 583 74802 184 23 22 211 50 56 6 3 0 23 7 0 15 0 14 52 chain 90719 chr14 107349540 + 43661220 43662298 MER11C 1089 - 10 1089 39385 35 1 0 6 11 13 1025 chain 109235 chr14 107349540 + 43662298 43663922 L1PA11 4918 + 2964 4578 34389 62 0 4 196 13 10 564 6 0 6 14 22 46 0 4 217 9 15 83 3 6 15 5 7 110 11 5 50 9 8 13 2 0 68 2 0 13 1 0 20 48 35 11 1 0 13 2 0 11 chain 5080 chr14 107349540 + 43674331 43674394 L1MCa 1829 + 601 662 194291 8 2 0 53 chain 6169 chr14 107349540 + 43698919 43698994 MER33 330 - 95 170 183806 75 chain 89626 chr14 107349540 + 43699061 43700209 L1PA7 6471 - 1 1157 39772 318 0 1 14 0 1 92 0 1 77 0 2 262 0 2 50 1 2 27 2 1 17 0 1 288 chain 85460 chr14 107349540 + 43700209 43701261 L1PA7 6471 + 4254 5306 41177 163 0 2 214 2 1 321 3 1 28 0 1 321 chain 24573 chr14 107349540 + 43706277 43706578 AluSc 308 + 6 308 107116 116 0 1 185 chain 63625 chr14 107349540 + 43714930 43715742 LTR12 884 + 0 884 51178 25 1 0 30 0 41 151 0 25 105 2 0 65 7 5 11 4 12 67 0 2 271 4 5 69 chain 365271 chr14 107349540 + 43723053 43727095 L1PA3long 6157 + 2114 6157 11224 3900 0 1 142 chain 533858 chr14 107349540 + 43731267 43737278 L1PA3long 6157 + 0 6156 3722 152 14 15 455 0 1 147 6 134 1883 0 4 619 1 4 940 0 4 283 2 0 557 0 1 101 0 1 211 0 3 308 0 1 332 chain 120059 chr14 107349540 + 43764451 43765780 L1PA4 6152 + 4822 6152 31037 561 0 1 768 chain 9556 chr14 107349540 + 43796460 43796953 LTR12C 1709 + 837 1655 162806 35 0 41 59 0 41 24 343 586 32 chain 177801 chr14 107349540 + 43811940 43814328 L1P2 5180 - 1305 3394 21182 192 3 0 801 318 0 563 1 0 102 0 1 26 0 22 382 chain 28328 chr14 107349540 + 43812949 43813254 AluYa5 310 + 0 304 91839 132 1 0 172 chain 198255 chr14 107349540 + 43814330 43816608 L1PA5 6144 + 3853 6132 19339 30 0 2 185 0 1 777 2 1 445 1 0 838 chain 548746 chr14 107349540 + 43839472 43845498 L1PA2 6032 + 4 6032 1609 252 1 0 29 2 1 20 4 5 175 1 0 472 0 3 2606 1 0 624 0 1 1498 1 2 340 chain 29477 chr14 107349540 + 43858379 43858688 AluYf4 310 + 0 309 86734 309 chain 134772 chr14 107349540 + 43860484 43861947 L1PA2 6032 - 0 1463 27062 1463 chain 11758 chr14 107349540 + 43861947 43862078 L1P1 4361 + 4049 4179 153228 102 1 0 28 chain 74525 chr14 107349540 + 43874752 43875568 L1PA3long 6157 + 5338 6157 46254 677 0 3 139 chain 92181 chr14 107349540 + 43897212 43898253 L1PA3long 6157 - 0 1043 38909 146 1 3 894 chain 71059 chr14 107349540 + 43908759 43909669 L1P3 4156 + 3244 4139 47905 256 1 0 19 2 1 14 0 3 5 1 3 383 1 0 49 14 0 130 2 0 7 2 1 24 chain 121374 chr14 107349540 + 43916269 43917728 L1PA6 6164 - 5 1467 30573 163 3 4 59 0 1 618 1 2 615 chain 15284 chr14 107349540 + 43918434 43918668 L1PA15 4387 + 3430 3664 140528 176 20 22 5 2 0 31 chain 2968 chr14 107349540 + 43933630 43933664 L1MA4 2864 + 675 709 225704 34 chain 25996 chr14 107349540 + 43938468 43938755 L1PA2 6032 + 5730 6024 100034 143 0 7 144 chain 29152 chr14 107349540 + 43958423 43958754 L1PA5 6144 + 5812 6144 88305 184 0 1 147 chain 547173 chr14 107349540 + 43961388 43967404 L1PA2 6032 + 8 6029 1813 64 1 2 668 1 0 569 0 1 767 0 4 181 0 4 306 5 0 817 0 1 2637 chain 52342 chr14 107349540 + 44001892 44004482 LTR30 714 + 0 714 57403 132 1879 0 61 0 5 55 0 5 247 8 7 116 3 5 32 16 8 41 chain 18280 chr14 107349540 + 44002821 44003903 LTR12C 1709 + 650 1709 132129 63 47 124 23 0 2 47 27 23 46 0 41 18 735 596 76 chain 34202 chr14 107349540 + 44005150 44006126 HERV30-int 1034 + 147 785 77346 13 7 1 39 2 1 37 14 10 8 20 0 5 13 0 51 1 0 3 4 0 38 15 5 74 2 1 88 20 5 30 40 6 19 8 5 6 2 0 33 194 61 49 39 0 24 52 0 26 chain 49414 chr14 107349540 + 44007991 44008612 LTR30 714 + 7 653 59445 33 0 14 159 0 8 32 0 5 196 2 0 118 8 10 51 3 1 19 chain 41036 chr14 107349540 + 44016636 44017160 MLT2A2 560 - 14 560 67847 121 0 19 103 1 2 85 0 2 214 chain 19457 chr14 107349540 + 44031281 44031515 AluSp 311 + 73 307 128796 234 chain 43044 chr14 107349540 + 44045693 44046235 MER41A 554 + 13 554 65364 246 8 7 288 chain 42926 chr14 107349540 + 44049760 44050361 LTR12_ 688 - 1 688 65509 190 0 103 86 2 1 4 0 1 6 0 1 131 18 26 47 26 1 65 1 0 25 chain 128293 chr14 107349540 + 44050361 44052191 MER41-int 2638 + 785 2632 28498 23 0 14 36 14 7 9 1 3 131 12 13 19 8 1 9 0 1 268 0 1 238 1 2 135 1 0 87 3 1 73 20 19 34 2 0 271 6 7 39 13 15 177 4 1 14 1 0 151 15 33 15 chain 38122 chr14 107349540 + 44052221 44052746 MER41A 554 + 17 554 71952 179 6 0 7 12 18 185 1 5 12 0 8 123 chain 10216 chr14 107349540 + 44061568 44061918 L1PB1 5432 - 9 325 159534 18 1 0 9 4 3 23 1 0 25 1 0 14 129 112 51 18 12 12 8 6 22 5 0 9 chain 497906 chr14 107349540 + 44067103 44072604 L1PA2 6032 + 0 6030 6961 71 1 2 183 1 0 395 2 15 2892 0 1 639 0 515 1317 chain 26186 chr14 107349540 + 44075492 44075845 L1PA8 5853 + 5506 5853 99257 29 1 2 27 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 13186 chr14 107349540 + 44077306 44077513 MER30 238 - 0 238 147522 66 1 2 22 0 1 6 4 32 73 12 13 23 chain 8280 chr14 107349540 + 44086130 44086243 L1PA8 5853 + 5741 5853 169512 19 1 0 93 chain 24812 chr14 107349540 + 44087804 44088228 MLT2A2 560 - 0 560 105831 46 19 56 45 3 112 74 42 34 15 11 9 169 chain 45448 chr14 107349540 + 44099467 44100026 MLT2A2 560 - 0 560 62550 355 0 1 204 chain 173258 chr14 107349540 + 44121416 44124021 L1PBa1 4058 + 1456 4022 21683 145 0 1 44 7 6 15 1 0 144 0 2 94 8 0 126 2 0 70 31 35 28 10 18 98 1 3 159 4 10 11 25 10 203 1 0 405 19 31 11 29 17 166 7 8 118 2 1 113 8 1 37 0 1 77 1 0 8 1 0 29 1 0 11 2 4 30 3 0 104 3 1 17 1 0 12 6 0 14 4 2 18 2 1 4 1 0 4 3 0 19 1 0 11 19 15 4 1 0 7 1 0 18 2 1 24 chain 88978 chr14 107349540 + 44144147 44145290 L1PA7 6471 - 4 1109 40014 8 2 0 12 11 12 70 9 1 233 2 0 427 2 5 75 0 4 21 35 1 236 chain 20295 chr14 107349540 + 44147447 44147737 MER2 342 + 38 322 126239 27 5 7 8 3 0 37 0 1 57 6 0 147 chain 533875 chr14 107349540 + 44167856 44173869 L1PA3long 6157 + 9 6157 3720 142 1 2 211 0 1 403 8 136 1303 0 2 508 0 1 1085 0 2 505 0 1 330 1 0 1045 3 0 181 0 3 287 chain 29177 chr14 107349540 + 44191232 44191538 AluYb8 318 - 8 314 88168 306 chain 7184 chr14 107349540 + 44200418 44200532 MER67C 710 - 41 155 176187 74 2 0 5 6 8 27 chain 31269 chr14 107349540 + 44206330 44206710 L1PA7 6471 - 565 944 82046 107 2 1 177 1 0 29 0 1 64 chain 46571 chr14 107349540 + 44206710 44207260 L1PA7 6471 + 5911 6460 61546 173 1 0 376 chain 4194 chr14 107349540 + 44265999 44266054 MER67C 710 - 297 351 204641 50 1 0 4 chain 55515 chr14 107349540 + 44273572 44274258 LTR12 884 - 0 884 55406 13 0 133 361 2 0 35 1 68 274 chain 6855 chr14 107349540 + 44302870 44302949 L1PA4 6152 + 6072 6151 178543 79 chain 28536 chr14 107349540 + 44339669 44340089 MER4E1 777 - 10 456 91019 215 3 9 109 37 38 48 0 19 8 chain 11655 chr14 107349540 + 44346296 44346565 MER44A 345 + 0 300 153669 16 56 94 67 10 14 41 4 0 13 1 0 8 1 0 7 5 0 40 chain 3974 chr14 107349540 + 44356903 44356949 MADE1 96 + 0 46 207778 46 chain 75723 chr14 107349540 + 44373889 44374788 L1PA8 5853 - 841 1742 45637 10 1 0 421 0 1 390 0 2 77 chain 63885 chr14 107349540 + 44374797 44375609 L1PA8 5853 + 5046 5852 51059 182 0 1 7 9 8 320 1 0 35 0 1 8 2 0 71 1 0 9 1 0 55 1 0 17 1 0 92 chain 51313 chr14 107349540 + 44378240 44378871 L1PA7 6471 - 4 657 58099 6 4 0 222 0 20 82 1 0 196 0 4 78 0 3 42 chain 29132 chr14 107349540 + 44405197 44405604 THE1B-int 1605 - 0 408 88402 9 0 1 133 8 9 16 23 22 218 chain 14414 chr14 107349540 + 44429276 44429444 L1PA4 6152 + 5984 6152 143166 168 chain 5474 chr14 107349540 + 44461085 44461176 L1PA15 4387 + 4204 4291 190268 13 1 0 48 8 5 21 chain 34948 chr14 107349540 + 44465373 44465791 L1PA7 6471 + 6049 6469 76267 44 0 1 226 3 4 145 chain 9672 chr14 107349540 + 44473955 44474071 L1PA16 3655 + 3248 3364 162235 116 chain 23743 chr14 107349540 + 44483435 44483721 THE1B-int 1605 + 1311 1598 111818 160 0 1 126 chain 295032 chr14 107349540 + 44489751 44493705 L1PA7 6471 - 7 4130 13704 141 10 9 183 0 1 166 1 0 318 2 3 22 2 0 508 0 3 99 0 1 227 0 1 382 2 0 266 0 2 96 313 484 709 0 1 206 1 0 5 10 5 285 chain 25866 chr14 107349540 + 44492180 44492489 L1PA7 6471 + 1462 1771 100582 309 chain 243143 chr14 107349540 + 44493705 44496433 L1PA4 6152 + 3414 6143 16607 1886 0 1 842 chain 6887 chr14 107349540 + 44514830 44514934 L1PA7 6471 - 1839 1949 178293 74 0 1 5 5 10 20 chain 15860 chr14 107349540 + 44514934 44515128 L1PA7 6471 - 1950 2144 138778 194 chain 74533 chr14 107349540 + 44515132 44516029 L1PA7 6471 - 2151 3047 46247 256 1 0 640 chain 148834 chr14 107349540 + 44516031 44517861 L1PA7 6471 + 4634 6466 24779 321 1 0 213 0 3 448 7 6 85 1 0 420 1 2 168 8 9 157 chain 4315 chr14 107349540 + 44529338 44529389 PABL_B 668 + 572 623 203037 51 chain 73378 chr14 107349540 + 44544402 44545335 L1PA7 6471 - 2 960 46847 113 32 53 166 0 1 426 1 2 91 0 3 48 1 0 55 chain 95394 chr14 107349540 + 44552463 44553553 L1PA5 6144 + 5051 6140 37985 332 1 0 757 chain 2808 chr14 107349540 + 44554683 44554733 MLT1A 405 - 134 185 228636 17 10 11 23 chain 7762 chr14 107349540 + 44577701 44577842 MSTA-int 1630 + 0 141 172536 75 5 15 12 16 6 33 chain 11536 chr14 107349540 + 44580070 44580237 MSTB 430 + 244 404 154160 33 15 8 119 chain 142850 chr14 107349540 + 44596055 44597620 L1PA2 6032 - 6 1566 25677 7 2 0 7 1 0 1383 2 0 163 chain 29099 chr14 107349540 + 44627335 44627642 L1PA2 6032 - 1852 2159 87622 307 chain 168914 chr14 107349540 + 44627642 44629480 L1PA2 6032 + 4189 6029 22174 40 0 4 399 2 0 1397 chain 13287 chr14 107349540 + 44640939 44641099 L1PA5 6144 - 12 171 147138 148 2 1 10 chain 3511 chr14 107349540 + 44641099 44641136 L1PA5 6144 + 5897 5934 215203 37 chain 38738 chr14 107349540 + 44670379 44670800 L1PA2 6032 - 1 422 71092 421 chain 259587 chr14 107349540 + 44677551 44680515 L1PA5 6144 + 3187 6144 15727 1263 0 1 1206 9 1 323 16 16 147 chain 31458 chr14 107349540 + 44681868 44682216 L1PA4 6152 - 862 1210 81723 348 chain 76624 chr14 107349540 + 44682216 44683075 L1PA4 6152 + 5292 6152 45152 448 0 1 151 1 0 146 0 1 113 chain 4920 chr14 107349540 + 44686041 44686112 L1PA5 6144 + 6075 6144 196050 57 3 1 11 chain 5241 chr14 107349540 + 44687075 44687146 L1M1 2793 + 2587 2657 182968 41 1 0 29 chain 30016 chr14 107349540 + 44687146 44687682 L1PA15 4387 + 3851 4366 84753 37 14 12 32 1 0 41 1 0 29 1 0 17 13 14 71 1 0 27 1 0 54 1 0 20 3 1 10 5 4 47 7 4 43 3 1 12 10 5 24 1 0 10 chain 31518 chr14 107349540 + 44709782 44710140 L1PA4 6152 + 5793 6151 81616 358 chain 125490 chr14 107349540 + 44713926 44715447 L1PA7 6471 - 600 2108 29247 255 1 0 114 7 0 146 26 14 384 4 5 343 0 6 241 chain 48263 chr14 107349540 + 44715461 44716039 L1PA7 6471 + 5890 6467 60269 83 0 1 485 2 0 8 chain 9873 chr14 107349540 + 44731429 44731555 L1MA4 2864 + 2526 2652 161214 126 chain 83731 chr14 107349540 + 44735417 44736404 L1PA7 6471 + 5256 6247 42026 104 1 2 252 0 3 630 chain 364749 chr14 107349540 + 44780125 44784259 L1PA4 6152 + 2008 6142 11237 244 0 2 1435 1 0 1851 2 0 461 0 1 140 chain 326299 chr14 107349540 + 44790793 44794383 L1PA3long 6157 + 2567 6157 12332 3590 chain 18372 chr14 107349540 + 44803813 44804026 L1PA3long 6157 + 5940 6157 131874 5 0 3 59 0 1 149 chain 28425 chr14 107349540 + 44835562 44835865 AluYf4 310 - 7 310 91491 303 chain 118610 chr14 107349540 + 44845372 44847079 THE1B-int 1605 - 9 1592 31576 98 148 1 81 2 0 368 9 8 241 16 17 318 7 32 419 chain 3824 chr14 107349540 + 44845470 44845515 THE1B-int 1605 - 108 153 210030 45 chain 2720 chr14 107349540 + 44845515 44845544 THE1B-int 1605 - 78 107 229904 29 chain 2700 chr14 107349540 + 44845544 44845576 THE1B-int 1605 - 108 140 230235 32 chain 2720 chr14 107349540 + 44845589 44845618 THE1B-int 1605 - 78 107 229903 29 chain 261237 chr14 107349540 + 44848796 44853000 MER61-int 3695 - 2 3694 15633 36 0 1 51 0 2 26 29 44 53 6 8 118 8 0 196 7 9 4 0 1 4 1 0 277 1 0 98 1 0 83 0 1 29 1 0 40 1 2 36 19 0 149 0 1 195 1 0 40 558 0 51 2 0 14 20 15 22 0 21 48 21 18 51 0 3 156 1 0 119 1 2 43 4 9 84 0 1 30 0 4 66 1 0 292 10 12 347 7 6 8 0 1 129 2 0 43 0 24 27 11 10 52 0 1 64 5 6 82 12 13 43 2 1 112 0 7 9 0 2 95 1 0 16 4 0 29 chain 47871 chr14 107349540 + 44850309 44850863 LTR6B 557 - 0 557 60576 22 0 1 33 0 1 4 0 1 135 0 1 312 1 0 47 chain 116256 chr14 107349540 + 44853762 44855160 LTR12C 1709 + 0 1709 32357 283 9 0 10 0 9 302 0 1 52 0 277 131 7 9 38 8 6 106 0 4 111 0 29 72 0 1 110 1 0 158 chain 117857 chr14 107349540 + 44885994 44887499 HERVK22-int 3844 + 5 2062 31848 38 3 0 307 0 15 27 1 0 325 1 518 312 1 2 38 0 23 70 11 12 307 1 0 63 chain 34913 chr14 107349540 + 44897722 44898202 LTR19A 502 + 0 482 76323 167 0 2 22 1 2 39 11 10 17 0 1 49 3 4 29 3 1 139 chain 33051 chr14 107349540 + 44898255 44898637 L1PA4 6152 - 0 389 79136 6 0 5 137 0 1 163 0 1 76 chain 11562 chr14 107349540 + 44898638 44898767 L1PA4 6152 + 5651 5780 154057 129 chain 49107 chr14 107349540 + 44902084 44902742 PABL_A 660 + 1 660 59664 267 1 0 10 1 2 60 5 4 161 0 3 71 11 10 71 chain 3411 chr14 107349540 + 44910894 44910930 MLT2A1 477 - 0 36 216920 36 chain 11607 chr14 107349540 + 44916692 44916832 MER57A1 433 - 293 433 153866 140 chain 37924 chr14 107349540 + 44919295 44919911 LTR7B 505 - 15 505 72242 160 3 2 76 2 23 31 147 0 28 0 1 169 chain 2685 chr14 107349540 + 44919570 44919601 LTR7B 505 - 276 307 230382 31 chain 43172 chr14 107349540 + 44932356 44932913 LTR19B 566 - 0 565 65208 52 3 0 16 4 9 41 0 2 144 6 7 195 0 3 96 chain 488867 chr14 107349540 + 44940400 44945977 L1PA4 6152 - 4 6140 7413 840 0 4 285 0 1 970 0 15 351 1 0 173 1 0 332 2 1 152 2 4 450 12 16 1105 0 11 815 0 525 86 chain 4801 chr14 107349540 + 44964015 44964121 L1MA7 2200 - 94 190 197345 16 7 0 35 22 19 26 chain 25907 chr14 107349540 + 44969202 44969557 THE1A 353 - 0 352 100393 32 0 1 24 7 6 88 1 0 60 1 0 32 2 1 108 chain 4197 chr14 107349540 + 44971144 44971377 L1ME1 1623 + 1029 1260 204588 43 166 164 24 chain 469351 chr14 107349540 + 44979810 44985492 L1PA6 6164 - 5 6157 8059 203 3 2 137 0 3 420 0 1 71 0 4 37 0 408 693 0 1 224 0 1 430 0 1 291 0 1 41 0 1 152 2 4 450 1 5 244 17 0 51 0 9 237 1 0 33 0 5 625 6 7 543 0 17 256 0 32 54 6 5 47 1 2 160 3 1 243 chain 98340 chr14 107349540 + 45010708 45011857 L1PA6 6164 + 5005 6154 37212 466 1 0 532 7 0 6 2 10 135 chain 19879 chr14 107349540 + 45019909 45020231 THE1B 368 - 12 352 127552 79 17 17 17 30 45 28 2 1 102 1 5 46 chain 541999 chr14 107349540 + 45020753 45027005 L1PA4 6152 - 1 6152 2505 295 1 2 560 1 0 2129 2 1 1815 0 20 37 103 0 252 0 1 198 17 0 265 1 0 576 chain 276209 chr14 107349540 + 45038893 45042953 L1PB2 3958 + 108 3836 14862 32 6 4 28 4 0 8 1 0 46 7 4 135 31 32 23 1 0 95 0 1 105 0 1 299 0 1 330 1 0 4 3 4 315 2 1 71 0 3 120 10 0 113 0 1 245 4 8 346 3 0 227 0 1 151 1 0 62 1 0 53 34 30 43 0 13 59 296 0 157 6 0 28 2 0 53 5 4 8 5 0 67 28 22 84 4 3 69 1 0 62 1 0 96 8 0 61 chain 224287 chr14 107349540 + 45049470 45052594 L1PA7 6471 + 1964 6461 17635 157 7 1 76 0 1 5 0 7 291 309 0 137 8 6 353 5 1680 183 0 3 85 1 0 247 7 4 421 1 0 422 0 2 24 0 3 152 0 3 214 1 2 18 chain 87786 chr14 107349540 + 45053226 45054184 L1PA2 6032 - 3 986 40454 182 0 25 776 chain 50867 chr14 107349540 + 45054184 45054739 L1PA2 6032 + 4520 5075 58167 555 chain 125399 chr14 107349540 + 45070002 45071432 SVA_C 1631 + 0 1612 29279 18 0 17 122 0 39 416 0 37 112 0 1 76 0 88 24 1 0 52 1 2 608 chain 12295 chr14 107349540 + 45084901 45085154 MSTA 426 + 0 295 151028 88 38 86 32 2 0 29 32 28 32 chain 46026 chr14 107349540 + 45102761 45103275 L1PA3long 6157 + 5628 6142 62022 514 chain 32594 chr14 107349540 + 45103310 45103681 L1PA4 6152 + 5776 6152 79859 365 0 5 6 chain 328272 chr14 107349540 + 45110961 45114516 L1PA2 6032 - 3 3554 12268 12 3 0 2974 1 0 565 chain 37384 chr14 107349540 + 45134049 45134551 MLT2A2 560 + 0 512 72983 168 13 12 219 3 14 99 chain 451755 chr14 107349540 + 45135245 45140927 HERVL-int 5654 + 2 5654 8709 261 1 2 52 6 5 272 1 0 50 7 5 221 0 5 43 25 24 314 1 0 175 9 10 633 9 0 6 0 9 240 5 19 957 0 2 169 6 7 23 1 0 63 7 24 483 2 1 3 0 1 242 0 4 257 71 0 850 1 4 216 chain 18449 chr14 107349540 + 45141041 45141286 THE1C 375 - 132 375 131646 56 1 2 65 15 12 108 chain 2921 chr14 107349540 + 45142727 45142764 THE1C-int 1605 - 1450 1486 226670 32 1 0 4 chain 207701 chr14 107349540 + 45143805 45146095 L1PA3long 6157 + 3867 6157 18662 2048 1 0 92 0 1 149 chain 42607 chr14 107349540 + 45151985 45152460 L1PA4 6152 - 1796 2271 65888 475 chain 161884 chr14 107349540 + 45152460 45154261 L1PA4 6152 + 4351 6151 23082 308 1 0 1492 chain 83727 chr14 107349540 + 45154875 45155964 L1PA7 6471 - 1 1086 42027 127 0 3 16 15 15 92 1 0 79 5 6 286 3 4 70 0 2 5 2 0 59 2 0 89 0 3 149 12 3 77 chain 422107 chr14 107349540 + 45162725 45168297 L1PA7 6471 + 904 6465 9485 349 0 19 37 0 1 1331 13 6 693 3 5 192 0 3 697 0 1 42 0 1 37 0 2 62 13 14 224 0 1 31 325 0 16 0 4 313 22 13 304 0 201 136 4 99 118 4 5 598 2 0 6 chain 561862 chr14 107349540 + 45174283 45180307 L1HS 6032 - 0 6032 296 98 0 1 4749 0 1 161 0 6 1016 chain 120219 chr14 107349540 + 45190780 45192346 THE1B-int 1605 + 0 1605 30974 15 0 2 96 10 13 277 0 1 22 0 25 217 45 47 648 0 1 155 0 5 81 chain 10481 chr14 107349540 + 45215563 45215697 L1MA2 4263 - 1418 1552 158328 134 chain 5359 chr14 107349540 + 45225425 45225513 MLT1A0 366 - 5 97 191451 34 15 19 39 chain 23003 chr14 107349540 + 45233729 45234063 Charlie3 2679 + 2353 2674 115604 68 1 2 86 0 2 33 3 0 59 3 0 5 23 13 53 chain 7557 chr14 107349540 + 45239117 45239202 L1PA7 6471 + 6256 6341 173823 85 chain 11188 chr14 107349540 + 45239202 45239332 L1PA7 6471 + 6342 6470 155474 119 2 0 9 chain 7431 chr14 107349540 + 45260283 45260382 Tigger3b 1229 + 400 497 174572 10 3 1 86 chain 6653 chr14 107349540 + 45268356 45268607 LTR12C 1709 + 769 901 180067 68 160 41 23 chain 3808 chr14 107349540 + 45268679 45268724 LTR12C 1709 + 654 699 210265 45 chain 21899 chr14 107349540 + 45285042 45285421 THE1D 372 - 0 372 120625 32 1 0 116 1 0 30 30 32 23 3 0 7 25 30 51 9 0 51 chain 291448 chr14 107349540 + 45290077 45294378 L1PA10 4194 + 244 4151 13935 6 1 0 21 2 0 15 1 0 8 37 12 7 1 0 24 2 0 8 9 8 10 1 0 11 1 0 6 2 0 4 0 1 10 20 8 85 2 0 541 1 0 254 345 10 239 1 0 114 0 2 112 1 0 11 2 3 62 0 2 21 3 0 35 19 17 181 1 0 126 24 0 10 5 18 179 0 1 184 4 2 11 0 1 108 1 0 13 0 15 189 3 1 174 17 9 8 1 0 124 0 1 376 4 6 99 4 0 314 17 15 40 4 1 18 0 9 7 chain 5617 chr14 107349540 + 45304288 45304358 THE1B 368 + 273 345 188911 65 0 2 5 chain 4817 chr14 107349540 + 45307512 45307564 THE1B 368 - 316 368 197155 52 chain 4481 chr14 107349540 + 45311470 45311519 MLT2B2 565 + 516 565 201015 49 chain 444186 chr14 107349540 + 45323605 45328775 L1PA5 6144 + 968 6142 8925 200 9 1 482 0 1 18 0 2 141 10 15 551 0 4 179 0 4 610 3 0 173 2 0 622 11 6 363 1 5 1122 0 1 448 0 1 225 chain 3231 chr14 107349540 + 45338619 45338656 LTR52 417 + 346 383 220394 37 chain 286905 chr14 107349540 + 45339583 45343291 L1PA7 6471 - 1 6466 14228 11 1 4 125 8 18 691 1 0 355 6 13 486 1 2561 375 0 1 268 2 1 202 4 5 431 4 1 6 0 3 60 1 0 34 2 1 83 0 10 202 24 194 118 16 15 191 chain 41078 chr14 107349540 + 45349134 45350067 L1M1 2793 + 2056 2681 67798 43 3 10 193 9 20 97 353 31 57 2 0 39 1 0 56 0 1 25 1 0 46 1 0 7 chain 67342 chr14 107349540 + 45360405 45361131 L1PA3long 6157 - 10 736 49512 726 chain 25132 chr14 107349540 + 45363362 45363674 AluYk4 311 + 0 311 104116 64 2 0 62 0 1 184 chain 26068 chr14 107349540 + 45369027 45369332 AluSp 311 - 3 311 99760 43 0 2 205 0 1 57 chain 3107 chr14 107349540 + 45376355 45376389 MIRc 230 + 142 176 222784 34 chain 14452 chr14 107349540 + 45390648 45390808 L1PA4 6152 + 5976 6136 143039 160 chain 6721 chr14 107349540 + 45399768 45399940 Tigger4a 237 + 45 221 179531 26 3 60 9 57 0 31 2 6 44 chain 23116 chr14 107349540 + 45407241 45407572 MSTD-int 1705 - 5 338 115059 69 1 0 48 0 1 156 24 26 33 chain 19493 chr14 107349540 + 45456489 45456713 L1PA5 6144 + 5163 5388 128675 44 0 1 180 chain 67907 chr14 107349540 + 45456713 45457463 L1PA5 6144 + 5389 6139 49283 750 chain 28321 chr14 107349540 + 45488687 45489014 LTR17 781 - 455 781 91863 115 1 0 211 chain 108013 chr14 107349540 + 45491622 45492897 HERV17-int 4347 - 0 1251 34708 125 0 1 118 0 1 340 2 0 10 0 1 290 0 2 59 36 8 95 0 1 200 chain 20234 chr14 107349540 + 45506012 45506288 THE1A 353 - 0 281 126430 37 10 11 26 1 0 84 0 6 79 1 0 38 chain 7963 chr14 107349540 + 45512084 45512177 Tigger1 2417 + 1310 1403 171269 93 chain 6581 chr14 107349540 + 45512678 45512777 Tigger1 2417 - 1536 1634 180606 65 6 5 28 chain 6187 chr14 107349540 + 45547628 45547702 L1MA7 2200 - 255 329 183680 74 chain 3377 chr14 107349540 + 45549175 45549354 LTR33 499 - 291 483 217536 37 126 139 16 chain 119708 chr14 107349540 + 45549456 45550877 LTR12C 1709 + 0 1709 31144 491 0 1 158 0 119 64 0 40 231 3 0 6 1 0 7 3 1 106 0 4 43 1 0 207 1 132 99 chain 5922 chr14 107349540 + 45565112 45565185 MER41B 635 - 88 160 185975 67 1 0 5 chain 2499 chr14 107349540 + 45631634 45631736 MER5C 305 - 83 188 233142 24 4 0 6 52 59 16 chain 3643 chr14 107349540 + 45642961 45643005 MIR 256 + 157 201 212914 44 chain 26374 chr14 107349540 + 45701340 45701641 AluY 311 + 3 304 98519 301 chain 23305 chr14 107349540 + 45719950 45720260 AluY 311 + 8 303 114174 40 10 0 6 6 0 78 0 1 170 chain 27280 chr14 107349540 + 45729640 45730012 THE1C 375 + 0 375 95339 124 1 0 11 0 4 36 11 12 163 1 0 25 chain 5647 chr14 107349540 + 45743590 45743657 U6 107 - 29 96 188588 67 chain 6154 chr14 107349540 + 45744470 45744544 MLT1B 390 + 300 374 183950 74 chain 17164 chr14 107349540 + 45750285 45750605 THE1D 372 + 0 309 135128 76 15 0 6 5 1 78 62 70 78 chain 4612 chr14 107349540 + 45750716 45750796 MER11B 1079 + 146 225 199496 45 15 14 20 chain 91556 chr14 107349540 + 45761767 45763395 L1PA13 3608 + 2250 3548 39110 154 23 20 10 308 0 29 0 1 52 8 9 61 0 2 102 4 6 431 2 1 32 1 0 113 2 0 62 1 0 60 3 1 48 2 0 4 2 0 15 3 2 20 4 6 13 5 0 14 1 0 4 10 4 11 3 0 11 chain 58671 chr14 107349540 + 45763880 45764606 MER4E1 777 + 0 769 53598 24 0 1 148 0 1 290 0 1 45 1 0 30 1 6 15 0 33 158 0 2 10 0 1 4 chain 16201 chr14 107349540 + 45764751 45764956 L1PA4 6152 + 5939 6143 137747 56 10 10 129 1 0 9 chain 533705 chr14 107349540 + 45789446 45795578 L1PA5 6144 - 0 6141 3739 113 1 0 698 1 0 32 0 4 904 0 1 1195 7 8 172 0 1 76 0 2 1585 0 1 132 0 1 1216 chain 10013 chr14 107349540 + 45796548 45796663 L1PA4 6152 + 6037 6152 160519 115 chain 6992 chr14 107349540 + 45804829 45804921 MSTA 426 - 327 418 177526 5 1 0 86 chain 4030 chr14 107349540 + 45817675 45817744 LTR24B 570 - 0 71 206938 29 7 8 5 0 1 28 chain 252049 chr14 107349540 + 45818390 45821188 L1PA4 6152 - 1 2799 16126 2798 chain 27101 chr14 107349540 + 45853448 45853752 L1P1 4361 + 4026 4328 95937 125 1 0 154 1 0 23 chain 108830 chr14 107349540 + 45858194 45860052 SVA_F 1814 + 604 1814 34482 81 1 1 202 1 0 48 0 1 10 403 15 209 3 0 16 257 0 627 chain 3265 chr14 107349540 + 45858556 45858592 SVA_F 1814 + 1107 1143 136168 36 chain 26970 chr14 107349540 + 45858592 45858940 SVA_F 1814 + 967 1265 88710 124 50 0 174 chain 2268 chr14 107349540 + 45858716 45858741 SVA_F 1814 + 1267 1291 136168 7 1 0 17 chain 13633 chr14 107349540 + 45859169 45859322 SVA_F 1814 + 1011 1164 116977 153 chain 9389 chr14 107349540 + 45859322 45859424 SVA_F 1814 + 1037 1138 131749 91 1 0 10 chain 21188 chr14 107349540 + 45866730 45867041 L1MA2 4263 + 3012 3321 123248 60 11 6 8 0 5 56 12 11 8 1 0 155 chain 8641 chr14 107349540 + 45880500 45880611 MER57A1 433 + 0 114 167534 42 1 4 68 chain 511344 chr14 107349540 + 45880614 45887069 L1PA6 6164 + 0 6156 6035 196 0 1 370 1 0 364 0 4 548 2 4 102 0 3 405 0 7 184 0 9 78 0 2 57 26 1 367 0 3 312 0 10 136 0 2 24 0 1 182 2 4 8 2 0 515 3 4 991 8 6 413 6 0 20 0 1 169 307 0 322 4 1 174 26 25 131 chain 25311 chr14 107349540 + 45887081 45887410 MER57A1 433 + 99 429 103171 172 6 7 151 chain 162794 chr14 107349540 + 45891616 45893893 MER57-int 2662 + 40 2321 22964 30 51 33 4 0 1 75 3 0 5 6 11 116 2 0 114 0 18 142 0 1 99 4 0 112 4 0 12 2 0 220 5 6 56 4 0 102 0 1 39 2 0 130 1 3 29 2 0 59 6 11 36 1 0 26 0 5 96 6 7 48 15 14 196 10 12 173 4 9 230 chain 33617 chr14 107349540 + 45894586 45895010 MER57A1 433 + 0 433 78215 30 1 7 85 0 6 162 3 0 143 chain 246078 chr14 107349540 + 45899817 45903138 L1PA11 4918 - 401 3816 16441 9 1 0 8 0 1 4 1 0 7 1 0 18 2 0 63 2 0 13 2 1 51 13 11 96 0 4 47 3 0 48 10 11 217 0 4 113 31 16 29 0 20 207 0 1 148 0 3 31 1 0 516 0 1 53 1 2 6 1 0 41 1 0 4 0 1 270 4 28 82 0 3 9 0 1 25 0 5 43 1 0 288 3 1 34 2 0 5 6 7 94 1 4 124 1 0 339 0 2 182 0 55 9 chain 118112 chr14 107349540 + 45928864 45930240 L1PA7 6471 - 6 1379 31768 252 1 0 592 2 0 529 chain 106328 chr14 107349540 + 45943744 45946303 L1PA5 6144 - 3 2530 6432 6 4 0 1349 0 2 126 1 0 727 29 0 317 chain 562258 chr14 107349540 + 45946340 45952372 L1HS 6032 - 0 6032 290 1077 0 1 4698 7 6 250 chain 147920 chr14 107349540 + 45952374 45955934 L1PA5 6144 - 2530 6129 6432 169 0 9 260 1 0 18 1 0 333 0 1 221 0 1 227 0 1 32 0 1 27 0 1 4 1 0 429 0 1 452 1 0 12 1 6 239 9 0 187 7 8 125 13 23 162 0 20 616 0 1 13 chain 54829 chr14 107349540 + 45959427 45960203 L1MA2 4263 - 1130 1891 55815 164 5 6 294 0 1 21 5 3 91 29 12 102 1 2 5 0 1 59 chain 13701 chr14 107349540 + 45960631 45960886 L1M1 2793 - 1726 1983 145596 64 1 0 23 28 37 41 1 0 6 0 4 6 9 3 44 1 0 8 2 0 21 chain 228210 chr14 107349540 + 45966276 45968935 HERVH-int 3825 - 0 2851 17403 487 10 220 1047 0 1 296 0 2 302 1 0 40 9 0 204 15 0 42 0 4 206 chain 13461 chr14 107349540 + 45974865 45975016 L1PA5 6144 - 0 151 146482 151 chain 15544 chr14 107349540 + 45978505 45978706 L1PA7 6471 - 5 204 139749 8 0 2 4 1 0 93 3 0 92 chain 6095 chr14 107349540 + 45981168 45981484 L1MD2 1676 - 443 762 184455 38 70 78 4 1 0 16 122 118 11 1 0 5 1 2 47 chain 18898 chr14 107349540 + 45985035 45985251 L1PA5 6144 + 5852 6067 130374 179 1 0 36 chain 33232 chr14 107349540 + 46012938 46013301 L1PA4 6152 + 5766 6136 78827 240 0 7 123 chain 553321 chr14 107349540 + 46014926 46021088 L1PA3long 6157 - 2 6153 1037 794 8 1 4590 4 0 766 chain 137956 chr14 107349540 + 46038238 46039881 L1PA7 6471 + 4812 6457 26490 267 22 0 8 0 22 535 1 0 398 0 2 92 1 2 319 chain 6641 chr14 107349540 + 46042736 46042834 L1PA14 3548 - 112 206 180159 21 1 0 23 1 0 14 4 2 34 chain 201515 chr14 107349540 + 46060336 46063033 L1PA8 5853 + 3162 5853 19105 221 0 5 202 0 1 266 3 0 5 7 11 54 11 12 377 0 1 178 1 3 236 1 0 27 0 1 73 1 0 48 0 1 100 9 0 8 0 10 8 10 8 66 1 4 14 25 7 19 0 6 35 7 6 389 1 0 44 2 0 70 13 11 51 2 1 16 5 4 55 6 7 30 chain 191406 chr14 107349540 + 46065868 46068015 L1PA4 6152 - 1 2143 19920 155 7 0 329 0 1 1600 0 1 56 chain 25943 chr14 107349540 + 46068015 46068301 L1PA4 6152 + 3728 4014 99510 286 chain 28266 chr14 107349540 + 46073948 46074260 AluYg6 310 - 2 310 92058 177 4 0 131 chain 228120 chr14 107349540 + 46074982 46077483 L1PA3long 6157 + 3512 6033 17408 434 0 1 407 1 5 757 0 15 902 chain 112246 chr14 107349540 + 46103702 46105658 SVA_B 1603 + 0 1603 33601 18 0 11 14 11 8 15 0 5 52 11 0 78 10 11 292 37 0 25 7 7 19 0 3 33 37 0 73 185 1 5 0 3 32 122 11 67 0 3 37 0 3 37 0 3 23 51 61 37 0 3 44 2 0 36 0 3 26 16 0 504 chain 4178 chr14 107349540 + 46104942 46104993 SVA_B 1603 + 576 629 172407 21 0 2 30 chain 5270 chr14 107349540 + 46108441 46108501 MER72 723 + 310 370 192317 60 chain 234989 chr14 107349540 + 46129415 46133345 L1PA14 3548 - 83 3443 17030 10 6 0 59 1 0 9 1 0 9 4 2 30 19 14 35 255 26 50 1 0 83 1 0 7 2 0 13 8 4 109 16 12 40 3 1 11 25 23 28 6 7 32 2 1 168 2 1 145 1 0 81 0 1 5 1 0 208 4 0 336 2 1 19 1 0 7 0 1 134 0 2 143 13 16 11 0 1 32 14 1 101 0 1 213 0 1 37 15 34 137 0 11 6 0 7 502 2 0 188 2 0 31 2 0 30 2 1 20 6 5 64 327 0 43 chain 132760 chr14 107349540 + 46137617 46139123 L1PA5 6144 - 3 1509 27466 6 5 0 667 0 1 296 0 4 130 0 1 215 2 1 185 chain 167853 chr14 107349540 + 46158832 46161048 L1PA11 4918 + 2312 4566 22297 47 0 2 358 0 1 66 0 6 330 1 2 651 0 1 212 0 24 301 0 4 14 1 0 11 0 20 33 1 0 12 2 0 66 7 5 10 6 5 15 4 0 9 7 2 11 13 9 15 1 0 12 chain 5388 chr14 107349540 + 46163138 46163208 L1P3 4156 + 4045 4113 191099 62 2 0 6 chain 28510 chr14 107349540 + 46173066 46173370 AluYa5 310 - 8 310 91150 209 2 0 93 chain 37323 chr14 107349540 + 46182629 46183427 LTR3B_ 500 - 0 498 73057 74 1 0 20 0 2 48 1 5 6 0 3 44 2 1 135 0 1 85 308 0 74 chain 34563 chr14 107349540 + 46184973 46185458 LTR3B_ 500 - 0 473 76807 76 1 0 15 0 2 237 0 1 7 12 13 62 18 4 5 1 0 51 chain 22277 chr14 107349540 + 46192740 46193033 L1PA7 6471 + 6162 6454 119008 156 14 13 123 chain 9599 chr14 107349540 + 46210129 46210237 L1PA3long 6157 - 1 109 162608 108 chain 506811 chr14 107349540 + 46219201 46226351 L1PA7 6471 - 10 6404 6413 304 0 7 415 37 7 107 1 0 236 1 0 116 0 2 23 1 0 574 5 0 143 0 4 196 15 3 101 0 2 392 1 0 146 0 1 104 35 23 30 1 2 26 2 0 397 7 11 417 3 0 411 1 0 84 573 0 210 2 0 448 0 9 159 0 1 6 1 0 42 6 10 364 0 10 237 1 2 19 1 0 5 0 2 27 17 17 84 181 30 83 7 0 124 16 16 205 chain 43062 chr14 107349540 + 46223533 46224098 L1P1 4361 + 1740 2242 65063 76 0 1 123 1 0 38 63 0 264 chain 7502 chr14 107349540 + 46225738 46225826 L1P3 4156 - 2492 2580 174142 88 chain 3740 chr14 107349540 + 46225826 46225868 L1P3 4156 + 1564 1606 207279 42 chain 141528 chr14 107349540 + 46239137 46240714 L1PA4 6152 - 11 1594 25894 139 0 1 526 0 1 540 0 4 372 chain 11592 chr14 107349540 + 46248878 46249117 L1PA15 4387 - 85 323 153926 32 6 3 35 12 18 9 4 0 17 4 7 50 1 0 21 11 10 32 1 0 4 chain 87644 chr14 107349540 + 46249819 46251129 L1PA13 3608 - 2005 3291 40515 14 15 16 54 3 7 113 1 2 340 5 4 40 13 3 194 0 4 182 9 7 44 18 10 35 2 1 17 2 0 20 1 0 14 1 0 19 6 2 16 8 6 11 1 0 6 5 4 101 chain 55289 chr14 107349540 + 46256931 46257565 L1PA5 6144 - 16 650 55527 634 chain 104433 chr14 107349540 + 46263820 46264985 L1PA4 6152 - 0 1171 35631 10 0 6 1155 chain 64932 chr14 107349540 + 46264989 46265798 L1P1 4361 + 16 825 50601 213 0 1 90 0 1 13 5 6 110 9 6 369 chain 73700 chr14 107349540 + 46313596 46314383 L1HS 6032 - 3 790 46674 787 chain 12673 chr14 107349540 + 46335171 46335308 L1PA2 6032 + 5893 6030 149557 137 chain 545870 chr14 107349540 + 46352430 46358461 L1PA2 6032 - 2 6031 1963 1523 1 0 1892 0 1 1872 1 0 34 0 2 57 2 0 30 0 1 358 9 8 108 1 0 143 chain 7631 chr14 107349540 + 46360824 46360926 LTR18B 584 + 88 188 173348 72 1 0 3 1 0 25 chain 4272 chr14 107349540 + 46380288 46380350 L1MA6 2487 - 481 545 203587 41 2 3 4 0 1 15 chain 31974 chr14 107349540 + 46394814 46395266 MLT2A1 477 + 0 477 80897 171 11 9 24 0 1 77 8 0 103 4 0 7 10 48 37 chain 147026 chr14 107349540 + 46395677 46397304 L1PA3long 6157 - 0 1625 25018 5 2 0 1620 chain 93811 chr14 107349540 + 46397304 46398327 L1PA3long 6157 + 3515 4538 38381 1023 chain 20104 chr14 107349540 + 46404796 46405140 THE1B 368 + 0 368 126812 44 0 15 113 1 0 26 13 74 7 51 0 89 chain 216534 chr14 107349540 + 46460239 46462610 L1PA2 6032 - 15 2387 18083 2261 1 2 109 chain 51367 chr14 107349540 + 46469029 46469620 L1PA4 6152 - 11 602 58051 395 13 13 183 chain 161435 chr14 107349540 + 46469628 46471458 L1PA4 6152 + 3735 5576 23132 47 0 1 168 1 2 400 1 5 276 1 2 662 0 4 274 chain 29617 chr14 107349540 + 46481635 46482060 LTR7 482 - 0 482 86150 192 0 32 30 3 4 109 8 46 10 29 15 44 chain 281053 chr14 107349540 + 46483321 46486897 HERVH-int 3825 - 0 3825 14580 204 0 1 18 5 7 181 7 6 78 0 210 36 12 14 212 1 2 5 1 0 266 0 1 95 0 3 344 5 8 33 9 14 62 0 10 298 5 32 448 15 1 457 1 0 64 0 20 39 1 0 4 16 14 7 3 0 12 1 0 15 30 18 6 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 145 0 4 184 chain 29916 chr14 107349540 + 46486907 46487306 LTR7 482 - 8 482 85050 90 0 4 86 4 36 33 0 1 105 12 50 69 chain 90951 chr14 107349540 + 46528872 46529936 L1PA5 6144 + 5071 6135 39308 223 1 0 390 0 1 123 1 2 185 1 0 140 chain 86586 chr14 107349540 + 46534329 46535291 L1PA4 6152 - 598 1560 40937 962 chain 52547 chr14 107349540 + 46535304 46535902 L1PA4 6152 + 5552 6151 57268 444 0 1 154 chain 5134 chr14 107349540 + 46549898 46549958 MLT1A0 366 + 290 350 193747 60 chain 531774 chr14 107349540 + 46564624 46570751 L1PA4 6152 - 0 6152 3992 8 0 1 988 0 29 702 1 5 328 0 1 1326 0 1 246 4 0 573 0 2 993 0 8 107 25 8 72 0 1 177 1 0 576 chain 27349 chr14 107349540 + 46580884 46581255 THE1C 375 + 0 375 95117 121 3 0 65 0 1 4 16 23 136 1 0 25 chain 96273 chr14 107349540 + 46621204 46622269 L1PA4 6152 - 1 1067 37737 400 1 2 664 chain 73625 chr14 107349540 + 46626949 46627835 L1P3 4156 - 717 1608 46718 79 0 1 588 0 2 77 0 2 142 chain 533793 chr14 107349540 + 46630343 46636485 L1PA4 6152 - 1 6152 3728 112 0 1 152 0 1 455 0 1 135 1 0 60 0 1 1543 2 1 423 0 5 84 1 0 650 3 0 213 0 1 752 0 2 35 1 0 103 0 5 185 1 0 155 2 0 36 1 2 789 0 1 248 chain 192565 chr14 107349540 + 46648196 46650323 L1PA3long 6157 - 1489 3620 19809 310 0 4 1817 chain 134021 chr14 107349540 + 46650323 46651796 L1PA3long 6157 + 4685 6157 27204 675 1 0 797 chain 66821 chr14 107349540 + 46651850 46652691 L1PA7 6471 - 5 847 49721 7 3 0 136 25 26 193 0 1 385 0 1 7 0 1 85 chain 23225 chr14 107349540 + 46655624 46655970 L1PA7 6471 - 7 383 114564 135 46 44 7 0 2 80 3 33 75 chain 68126 chr14 107349540 + 46675631 46676398 L1P1 4361 - 1158 1924 49053 27 1 0 739 chain 71166 chr14 107349540 + 46676398 46677198 L1PA5 6144 + 5345 6144 47862 37 0 1 753 2 0 8 chain 169288 chr14 107349540 + 46695210 46697141 L1PA5 6144 + 4208 6137 22144 450 1 0 1323 1 6 5 5 0 39 1 0 106 chain 2844 chr14 107349540 + 46699468 46699500 MER21C 908 - 874 906 227954 32 chain 200230 chr14 107349540 + 46700275 46702532 L1PA3long 6157 + 3897 6155 19192 157 0 1 175 0 2 259 0 2 148 1 0 235 2 1 609 1 0 521 1 0 148 chain 58414 chr14 107349540 + 46707108 46707746 L1PA3long 6157 - 0 638 53736 638 chain 2806 chr14 107349540 + 46711019 46711051 L1MA6 2487 - 218 250 228649 32 chain 76763 chr14 107349540 + 46732994 46733991 L1PA7 6471 - 2643 3656 45063 15 8 12 248 0 4 26 1 0 29 0 2 52 5 3 107 0 1 26 0 4 202 7 11 271 chain 212086 chr14 107349540 + 46733991 46736648 L1PA7 6471 + 3843 6467 18353 88 8 7 75 0 1 68 1 2 173 1 2 95 0 4 73 7 8 38 0 1 1019 63 1 167 0 1 15 5 6 67 1 17 74 0 2 466 0 1 153 chain 78826 chr14 107349540 + 46752854 46753815 L1PA7 6471 - 13 978 44134 149 1 2 499 0 3 312 chain 40086 chr14 107349540 + 46753820 46754309 L1PA7 6471 + 5012 5493 69202 358 9 1 122 chain 79845 chr14 107349540 + 46757167 46758275 MER11A 1151 - 0 1151 43661 11 0 3 6 2 0 46 1 0 87 2 3 100 0 33 59 1 0 23 0 8 91 0 2 5 1 2 81 11 10 7 0 1 33 22 0 8 3 0 112 7 12 19 0 1 85 0 11 62 1 0 136 7 15 79 chain 44871 chr14 107349540 + 46790069 46790611 MER41A 554 + 13 554 63208 365 6 5 171 chain 21534 chr14 107349540 + 46806268 46806535 AluSc 308 + 38 296 122026 88 10 0 53 0 1 116 chain 3064 chr14 107349540 + 46825845 46825954 MLT1A0 366 + 235 358 223752 14 59 73 36 chain 22291 chr14 107349540 + 46830025 46830370 THE1B 368 - 0 368 118947 125 30 41 4 1 0 29 1 0 86 15 29 54 chain 461326 chr14 107349540 + 46840833 46846721 L1PA8A 6298 - 7 5888 8352 337 0 6 24 0 7 23 0 1 18 0 1 101 13 12 188 0 1 77 1 6 121 27 2 60 14 15 449 8 7 8 0 1 61 0 1 68 0 1 643 1 0 112 2 3 65 0 1 172 0 1 303 4 5 421 0 4 248 2 0 204 1 0 3 9 0 657 1 0 470 1 2 112 1 4 111 0 1 12 1 0 15 11 8 57 2 5 242 3 1 353 0 2 23 1 0 3 1 0 8 1 0 14 chain 75720 chr14 107349540 + 46853460 46854417 LTR13A 966 - 0 966 45641 32 0 1 103 47 48 620 1 8 154 chain 3580 chr14 107349540 + 46864616 46864657 Tigger1 2417 + 1436 1477 213991 41 chain 25102 chr14 107349540 + 46864658 46864937 AluYf4 310 + 0 282 104283 189 0 3 90 chain 86059 chr14 107349540 + 46870828 46871900 MER11B 1079 + 0 1064 41135 259 3 0 301 34 35 73 1 0 104 6 0 107 0 1 184 chain 132234 chr14 107349540 + 46888199 46897408 L1PA3long 6157 - 0 1908 27570 779 1 0 485 7593 293 351 chain 139988 chr14 107349540 + 46897408 46898968 L1PA3long 6157 + 4595 6156 26146 40 0 1 548 0 1 122 1 0 849 chain 19729 chr14 107349540 + 46902545 46902806 THE1A 353 - 10 265 128014 141 1 0 58 4 0 34 4 3 19 chain 443803 chr14 107349540 + 46907389 46913009 L1PA7 6471 + 0 6467 8933 402 3 0 8 0 2 266 0 1 5 2 1 171 0 1 70 6 1 6 0 5 182 8 19 91 0 4 377 0 1 4 1 0 137 1 0 233 5 6 377 2 0 144 0 1 117 7 0 257 6 10 511 91 918 229 0 1 391 1 0 52 22 9 123 0 6 57 2 0 277 0 5 69 0 9 62 1 0 518 3 5 63 0 2 107 0 1 153 chain 4598 chr14 107349540 + 46910794 46910845 L1P3 4156 - 2455 2506 199648 51 chain 142530 chr14 107349540 + 46942353 46943919 L1PA4 6152 - 4 1575 25719 994 0 5 572 chain 4997 chr14 107349540 + 46962310 46962669 L1ME1 1623 + 1165 1522 195164 43 1 0 19 273 272 23 chain 190379 chr14 107349540 + 46966205 46968526 L1PA7 6471 - 2 2339 20008 11 1 0 227 1 0 601 0 8 63 0 1 126 3 6 229 0 1 4 1 0 116 0 1 546 0 4 363 1 2 28 chain 546464 chr14 107349540 + 46977766 46983944 L1PA3long 6157 + 4 6149 1889 479 5 0 359 0 1 99 8 8 1572 1 0 187 0 5 107 0 1 414 4 7 10 27 0 8 0 2 9 0 1 1084 0 4 434 22 0 511 0 1 76 0 1 439 0 3 323 chain 4870 chr14 107349540 + 46990073 46990181 MADE1 96 - 0 96 196592 18 26 0 11 1 0 8 1 17 13 1 0 29 chain 140561 chr14 107349540 + 46998298 46999997 L1PA7 6471 - 20 1723 26064 4 1 0 315 0 1 433 1 0 22 0 2 53 1 4 339 1 0 40 0 1 288 1 0 162 0 1 38 chain 293776 chr14 107349540 + 47000601 47004755 L1P3 4156 - 17 4149 13780 24 2 1 9 2 0 505 332 0 29 2 1 4 0 1 180 1 0 305 1 0 4 0 1 250 0 2 496 21 355 69 2 1 101 0 3 457 14 0 102 1 5 92 2 0 283 2 0 27 16 0 224 6 12 11 0 12 48 14 8 5 6 0 13 0 2 13 0 1 82 1 0 81 1 0 52 20 34 6 15 0 221 chain 30100 chr14 107349540 + 47013208 47013660 LTR7B 505 + 0 495 84494 105 1 11 59 0 38 12 33 26 26 0 2 43 0 1 42 1 0 23 0 1 52 14 13 41 chain 289756 chr14 107349540 + 47013670 47017152 HERVH-int 3825 + 0 3825 14036 32 2 0 57 5 1 442 5 0 14 2 0 24 2 1 9 1 0 24 1 14 13 3 0 12 4 86 26 0 1 7 0 2 13 0 3 904 4 31 298 0 13 622 4 7 414 9 11 39 4 214 264 0 2 63 0 3 159 chain 29781 chr14 107349540 + 47018411 47018864 LTR7B 505 + 0 496 85538 105 1 11 59 0 38 12 34 27 25 0 2 43 0 1 42 1 0 23 0 1 52 15 14 41 chain 21615 chr14 107349540 + 47019850 47020122 MER41G 495 + 4 277 121710 244 0 1 28 chain 5414 chr14 107349540 + 47030985 47031200 L1MC1 2226 + 1985 2189 190847 11 2 0 39 125 117 32 1 0 5 chain 20205 chr14 107349540 + 47032521 47032878 THE1D 372 - 0 372 126517 34 2 0 92 10 9 35 0 4 13 22 19 21 0 14 48 2 0 5 12 24 13 7 0 41 chain 21323 chr14 107349540 + 47038227 47038590 L1PA13 3608 - 120 469 122787 19 1 0 21 9 5 47 8 5 48 9 7 61 3 1 68 11 10 36 1 0 21 chain 11845 chr14 107349540 + 47038590 47038745 L1PREC2 3366 + 1876 2030 152208 42 3 2 110 chain 12947 chr14 107349540 + 47050831 47051087 MER51-int 1546 - 4 235 148445 8 0 1 72 81 55 95 chain 13273 chr14 107349540 + 47075861 47076020 AluYc 301 + 139 300 147199 114 0 2 45 chain 49945 chr14 107349540 + 47084559 47085105 L1PA3long 6157 - 0 546 59060 546 chain 4929 chr14 107349540 + 47085849 47085971 L1MA9 1812 + 1499 1615 195944 27 1 0 13 45 40 36 chain 30691 chr14 107349540 + 47089780 47090173 L1PA7 6471 - 12 408 83050 37 0 3 288 6 4 19 0 2 43 chain 109283 chr14 107349540 + 47090174 47091645 L1P1 4361 + 2466 3941 34374 187 0 1 26 0 1 5 2 0 108 7 0 194 23 7 150 14 15 16 3 4 144 0 23 242 14 23 66 7 0 263 chain 58232 chr14 107349540 + 47109409 47110109 L1PA7 6471 + 5753 6458 53847 396 0 3 295 0 2 9 chain 73190 chr14 107349540 + 47128587 47129669 MER11A 1151 - 0 1151 46931 59 8 7 25 0 2 39 34 33 18 5 6 67 3 61 19 0 1 65 1 5 38 3 4 20 9 12 126 0 12 129 0 8 76 37 0 14 0 11 66 1 0 141 0 8 79 chain 188967 chr14 107349540 + 47146597 47148708 L1PA4 6152 + 4035 6151 20149 316 0 4 1217 0 1 578 chain 7763 chr14 107349540 + 47162447 47162795 MLT1C 463 - 2 338 172518 50 8 10 36 163 175 11 39 14 27 1 0 13 chain 28283 chr14 107349540 + 47170666 47170987 L1PA4 6152 - 0 324 91994 13 0 3 308 chain 112830 chr14 107349540 + 47195678 47196961 L1HS 6032 - 0 6031 33431 1015 0 4748 268 chain 24430 chr14 107349540 + 47203838 47204124 AluSp 311 + 6 293 107913 135 0 1 151 chain 19117 chr14 107349540 + 47222827 47223037 L1PA3long 6157 + 5949 6157 129776 203 2 0 5 chain 112601 chr14 107349540 + 47229727 47231272 THE1B-int 1605 - 5 1605 33504 65 1 0 6 0 1 45 7 5 294 0 1 144 11 13 69 1 0 110 0 14 160 10 13 21 21 23 6 1 0 82 2 1 68 6 31 263 0 1 119 0 15 5 3 0 25 chain 165194 chr14 107349540 + 47232807 47234675 L1PA4 6152 + 4248 6143 22628 103 0 4 166 3 23 812 0 3 637 0 1 6 2 1 139 chain 71591 chr14 107349540 + 47255597 47256416 L1PA4 6152 - 9 834 47663 238 0 4 27 0 1 234 0 1 320 chain 69316 chr14 107349540 + 47256416 47257203 L1PA4 6152 + 4529 5317 48677 78 0 4 12 0 1 248 4 0 79 0 1 225 1 0 140 chain 24363 chr14 107349540 + 47271135 47271490 THE1B 368 - 0 368 108303 75 1 0 115 2 1 92 26 41 44 chain 19642 chr14 107349540 + 47275539 47276236 MER41G 495 - 143 462 128276 19 28 27 38 381 0 68 10 9 10 0 1 20 0 4 123 chain 2914 chr14 107349540 + 47275626 47275674 MER41G 495 - 232 277 226809 4 1 0 33 2 0 8 chain 40547 chr14 107349540 + 47277855 47278369 MER41A 554 - 0 521 68521 81 0 5 94 0 1 188 1 2 150 chain 9734 chr14 107349540 + 47333174 47333295 L1PA3long 6157 - 54 168 161919 96 7 0 18 chain 205928 chr14 107349540 + 47334491 47336755 L1PA3long 6157 + 3892 6157 18796 1189 0 1 1075 chain 15825 chr14 107349540 + 47364313 47364524 THE1C 375 + 0 207 138875 121 3 0 65 0 1 14 2 0 6 chain 17574 chr14 107349540 + 47370353 47370546 L1PA4 6152 + 5958 6151 134064 193 chain 60536 chr14 107349540 + 47438211 47438903 L1PA5 6144 - 257 949 52559 692 chain 18404 chr14 107349540 + 47438923 47439133 L1PA5 6144 + 5920 6130 131768 210 chain 34178 chr14 107349540 + 47451938 47452319 L1P1 4361 - 146 526 77380 65 1 0 315 chain 25486 chr14 107349540 + 47505196 47505499 AluY 311 + 6 309 102285 303 chain 16728 chr14 107349540 + 47515177 47515361 L1PA4 6152 + 5962 6146 136319 184 chain 18376 chr14 107349540 + 47515574 47515808 L1PA5 6144 + 5903 6138 131859 104 10 11 120 chain 24366 chr14 107349540 + 47523534 47523808 L1PA4 6152 - 6 289 108285 62 0 2 79 0 7 133 chain 6909 chr14 107349540 + 47548090 47548235 L1MA8 2339 - 170 288 178123 5 3 0 45 25 4 15 2 0 21 1 0 28 chain 5471 chr14 107349540 + 47558893 47558953 L1PA5 6144 + 5788 5848 190291 60 chain 44487 chr14 107349540 + 47573399 47573880 LTR7 482 + 2 482 63596 247 1 0 233 chain 261598 chr14 107349540 + 47573882 47577075 HERVH-int 3825 + 0 3474 15612 121 4 0 153 9 0 7 1 10 137 0 1 55 0 56 30 1 0 9 2 1 19 1 0 5 28 0 15 0 37 42 2 1 57 0 1 6 0 2 13 0 3 445 15 0 114 8 0 345 4 31 1376 0 3 25 37 247 107 chain 41153 chr14 107349540 + 47577517 47577968 LTR7 482 + 0 482 67710 260 0 31 191 chain 104921 chr14 107349540 + 47582333 47583704 L1PA10 4194 + 2748 4161 35519 6 0 2 115 0 17 67 11 0 29 0 47 223 3 9 597 17 1 214 1 0 12 0 3 26 3 0 27 1 0 7 1 0 11 chain 115056 chr14 107349540 + 47598305 47599578 L1PA3long 6157 - 5 1281 32772 133 7 11 1118 1 0 14 chain 10615 chr14 107349540 + 47600106 47600224 L1PA5 6144 + 6019 6137 157753 118 chain 81955 chr14 107349540 + 47633529 47634460 L1PA5 6144 + 5208 6140 42782 307 0 1 624 chain 552839 chr14 107349540 + 47640866 47647012 L1PA3long 6157 + 6 6157 1088 2200 0 2 3272 0 1 422 1 2 244 0 1 7 chain 17095 chr14 107349540 + 47650289 47650555 L1PA8 5853 - 0 270 135329 86 1 7 19 2 1 49 14 12 71 2 0 17 0 3 5 chain 6812 chr14 107349540 + 47683007 47683090 THE1C 375 - 40 123 178861 83 chain 43176 chr14 107349540 + 47694292 47694759 L1PA3long 6157 + 5424 5892 65204 168 0 1 299 chain 24134 chr14 107349540 + 47694760 47695024 L1PA3long 6157 + 5892 6156 109562 264 chain 4063 chr14 107349540 + 47696513 47696725 LTR16A2 485 + 237 456 206444 25 149 156 38 chain 23952 chr14 107349540 + 47705233 47705516 AluY 311 + 20 305 110601 111 0 2 172 chain 129536 chr14 107349540 + 47711464 47713010 LTR12C 1709 + 0 1709 28196 78 1 2 229 0 1 4 1 0 377 0 159 261 1 0 6 2 0 5 0 2 100 0 4 481 chain 42801 chr14 107349540 + 47716863 47717394 L1PA7 6471 - 17 544 65656 133 2 0 8 11 1 7 0 10 158 2 0 210 chain 14642 chr14 107349540 + 47733906 47734152 L1PA7 6471 - 32 244 142448 41 20 1 10 25 10 150 chain 24540 chr14 107349540 + 47749241 47749546 AluSp 311 + 12 311 107309 20 5 0 7 1 0 272 chain 24099 chr14 107349540 + 47821350 47821658 HERVH-int 3825 + 2887 3193 109752 129 1 0 132 2 1 44 chain 5215 chr14 107349540 + 47821658 47821756 LTR7 482 + 377 476 192875 26 29 30 43 chain 514364 chr14 107349540 + 47846450 47852559 L1PA5 6144 + 1 6143 5738 119 1 15 112 7 6 334 0 3 267 0 1 312 9 0 568 0 1 194 0 2 140 4 0 237 6 3 555 6 8 369 0 5 108 0 5 308 0 1 1076 0 9 90 1 0 533 0 1 599 1 9 141 2 1 10 chain 97226 chr14 107349540 + 47865482 47866692 L1PA7 6471 + 5301 6468 37507 63 50 0 250 0 3 242 0 3 103 0 1 195 0 1 157 1 2 137 2 0 10 chain 24868 chr14 107349540 + 47931304 47931608 AluY 311 + 6 307 105524 102 0 1 23 0 1 166 5 0 8 chain 60950 chr14 107349540 + 47938366 47939062 L1PA4 6152 - 0 705 52360 11 0 6 137 1 2 26 0 1 151 0 1 370 chain 47429 chr14 107349540 + 47939344 47939930 L1PA7 6471 - 25 611 60880 104 0 1 20 1 0 461 chain 65163 chr14 107349540 + 47942893 47943767 L1PA10 4194 + 3303 4161 50491 158 17 9 282 2 1 155 0 1 173 4 0 34 3 0 34 1 0 11 chain 71521 chr14 107349540 + 47999109 47999974 MER11D 897 + 0 897 47684 501 0 2 95 0 23 169 1 8 99 chain 24897 chr14 107349540 + 48006382 48006666 L1PA4 6152 + 5865 6152 105365 33 1 0 140 0 1 97 0 3 13 chain 27447 chr14 107349540 + 48009214 48009515 AluYf4 310 - 9 310 94827 301 chain 3270 chr14 107349540 + 48039470 48039507 MADE1 96 + 5 42 219595 37 chain 112005 chr14 107349540 + 48039790 48041117 L1PA7 6471 + 5141 6467 33666 281 0 1 198 1 0 79 0 2 612 3 0 153 chain 84207 chr14 107349540 + 48046374 48047618 L1PA8 5853 + 4585 5853 41813 98 9 0 322 1 4 125 5 21 239 1 3 165 16 15 31 2 0 20 6 21 28 13 11 11 2 3 38 2 1 19 2 1 10 21 24 58 chain 11886 chr14 107349540 + 48059793 48059973 L1MA3 4352 + 4141 4326 152673 87 4 0 27 0 12 14 2 1 6 1 0 29 1 0 9 chain 82845 chr14 107349540 + 48060549 48061671 L1PA10 4194 + 2985 4161 42399 246 0 2 97 0 12 203 0 3 85 27 66 374 0 3 6 5 4 13 5 6 6 1 0 5 3 0 34 1 0 11 chain 36901 chr14 107349540 + 48078287 48078953 L1PB1 5432 - 12 617 73654 16 1 0 13 1 0 20 2 1 24 2 0 10 12 9 19 24 12 15 6 0 39 11 10 11 2 1 53 2 0 9 16 11 12 2 0 21 38 14 285 chain 73983 chr14 107349540 + 48078953 48079943 L1PB 1623 + 423 1446 46521 62 1 0 173 0 24 35 0 24 97 0 1 147 0 1 72 1 5 104 0 4 123 0 2 8 33 7 134 chain 113640 chr14 107349540 + 48095576 48097235 LTR12C 1709 + 0 1709 33193 203 1 0 88 6 7 40 7 50 112 1 2 33 5 12 58 0 1 231 1 0 160 0 41 74 118 6 90 24 0 16 11 4 212 0 102 85 1 0 82 chain 3484 chr14 107349540 + 48096596 48096639 LTR12C 1709 + 793 836 141112 43 chain 3275 chr14 107349540 + 48096639 48096679 LTR12C 1709 + 717 758 166868 33 0 1 7 chain 2682 chr14 107349540 + 48096679 48096714 LTR12C 1709 + 795 830 209916 35 chain 26730 chr14 107349540 + 48135231 48135658 LTR12C 1709 + 770 1203 97223 20 0 1 46 1 0 216 78 0 33 6 90 27 chain 4488 chr14 107349540 + 48135658 48135778 LTR12C 1709 + 718 1037 171245 49 49 249 11 1 0 10 chain 4076 chr14 107349540 + 48158738 48158785 L1P1 4361 + 3227 3274 206246 47 chain 74869 chr14 107349540 + 48185104 48186168 L1PA8 5853 - 60 1114 46076 32 4 3 14 1 0 54 8 7 4 1 0 10 0 4 57 2 0 44 1 0 203 28 20 254 20 17 46 0 1 14 0 2 71 5 6 191 chain 40094 chr14 107349540 + 48190334 48190879 MLT2A2 560 - 0 560 69195 31 0 1 111 6 17 122 1 0 10 0 2 152 0 1 53 5 2 39 1 5 14 chain 42592 chr14 107349540 + 48223543 48224044 MER9a2 513 - 0 513 65911 14 5 6 88 0 11 394 chain 16217 chr14 107349540 + 48228602 48228918 THE1B 368 - 25 368 137703 48 2 0 42 7 15 36 4 0 30 8 7 20 6 17 30 39 54 44 chain 5230 chr14 107349540 + 48230218 48230297 MADE1 96 - 1 96 192722 34 5 21 40 chain 522961 chr14 107349540 + 48264168 48269850 L1PA2 6032 + 339 6029 4867 979 1 0 275 0 1 662 0 1 3627 0 7 138 chain 12447 chr14 107349540 + 48280851 48281173 L1PB1 5432 - 10 302 150469 18 1 0 12 6 5 17 52 46 13 9 0 14 4 1 15 1 0 26 0 1 18 1 0 17 1 0 49 20 14 10 1 0 12 1 0 4 chain 187333 chr14 107349540 + 48317339 48319880 L1PA10 4194 + 1633 4150 20304 41 0 2 155 0 15 490 3 4 132 0 1 19 1 2 112 16 17 28 1 2 4 1 0 130 1 3 6 2 0 7 3 5 9 0 1 436 1 0 4 0 1 11 0 1 75 1 7 157 54 0 120 0 3 5 7 4 147 0 1 67 0 1 4 0 1 212 2 1 40 3 0 34 chain 40868 chr14 107349540 + 48330243 48330759 MER9a3 513 + 0 513 68066 17 0 2 130 8 0 28 0 1 256 3 4 20 0 2 42 1 0 11 chain 14965 chr14 107349540 + 48363187 48363566 L1MA4 2864 + 2471 2805 141430 31 1 0 137 1 0 4 153 110 14 2 0 28 0 2 8 chain 548283 chr14 107349540 + 48370386 48376407 L1PA2 6032 + 3 6032 1664 71 0 1 182 1 0 323 0 4 1614 1 0 1047 0 5 406 1 0 2210 5 0 7 3 9 150 chain 28067 chr14 107349540 + 48388194 48388574 L1PA10 4194 - 458 839 92762 59 5 6 62 5 1 132 4 8 113 chain 111280 chr14 107349540 + 48393874 48395191 L1PA5 6144 - 0 1301 33867 148 1 0 698 1 5 220 24 5 225 chain 5989 chr14 107349540 + 48404875 48405000 LTR24B 570 - 442 570 185343 21 0 1 12 29 32 23 2 1 38 chain 8470 chr14 107349540 + 48406374 48406477 MER57A1 433 + 0 107 168463 87 0 4 16 chain 266672 chr14 107349540 + 48409481 48412543 L1PA5 6144 + 3076 6132 15353 82 1 0 217 1 0 804 0 2 1500 6 0 451 chain 7199 chr14 107349540 + 48415544 48415777 MER57-int 2662 + 2436 2661 176072 58 1 0 10 130 123 34 chain 272728 chr14 107349540 + 48437356 48441041 L1PA8 5853 - 0 3690 15031 93 1 0 19 2 1 43 4 3 15 1 0 69 6 4 15 0 1 26 1 0 335 2 6 250 0 1 162 0 1 23 0 1 118 0 1 4 1 0 299 0 1 22 1 0 334 2 1 45 0 1 180 1 2 5 1 0 134 12 11 64 0 4 104 0 1 137 1 0 5 0 1 10 18 16 62 30 2 47 6 17 152 0 1 63 2 3 31 1 2 24 4 20 228 0 1 74 7 6 389 chain 49551 chr14 107349540 + 48480418 48480983 LTR14C 587 + 20 587 59355 451 1 3 113 chain 5126 chr14 107349540 + 48482817 48482894 L1MA9 1812 + 1583 1658 193816 34 3 1 40 chain 217348 chr14 107349540 + 48485718 48488220 L1PA5 6144 - 9 2510 18038 12 2 0 582 1 0 73 0 1 153 0 1 751 3 2 388 0 1 537 chain 50636 chr14 107349540 + 48488220 48488846 L1P1 4361 + 577 1204 58380 113 0 1 513 chain 36883 chr14 107349540 + 48539526 48539923 L1PA3long 6157 + 5759 6156 73678 397 chain 15571 chr14 107349540 + 48542824 48543069 MER4B 649 - 100 315 139667 9 34 0 29 0 2 147 0 2 26 chain 16693 chr14 107349540 + 48550481 48550683 L1PA5 6144 + 5794 5996 136424 202 chain 13201 chr14 107349540 + 48550683 48550830 L1PA5 6144 + 5997 6144 147459 147 chain 148200 chr14 107349540 + 48567366 48569181 L1PA7 6471 - 6 1837 24857 6 4 0 116 1 12 470 0 1 182 0 1 49 4 1 257 0 2 26 0 1 177 1 0 173 6 8 47 0 1 215 0 1 47 0 4 34 chain 91610 chr14 107349540 + 48569201 48570290 L1PA7 6471 + 3538 4623 39091 203 0 1 261 5 0 620 chain 65202 chr14 107349540 + 48597154 48601103 L1PA7 6471 - 2 866 50470 11 3 0 307 3092 0 292 9 12 216 0 7 19 chain 7315 chr14 107349540 + 48600291 48600384 MER85 139 - 0 104 175331 40 0 10 48 0 1 5 chain 10701 chr14 107349540 + 48600384 48600536 L1PA7 6471 - 137 290 157409 25 0 1 10 12 13 5 1 0 99 chain 11226 chr14 107349540 + 48601105 48601242 L1PA7 6471 + 6331 6468 155322 137 chain 19373 chr14 107349540 + 48619985 48620263 MSTA-int 1630 + 1314 1625 129015 123 18 15 21 0 36 116 chain 12812 chr14 107349540 + 48653147 48653309 THE1D-int 1627 + 1454 1616 149009 162 chain 565219 chr14 107349540 + 48656285 48662316 L1HS 6032 + 0 6032 195 3674 0 1 2357 chain 109174 chr14 107349540 + 48668503 48669934 HERV9-int 5642 + 4237 5642 34398 276 0 9 195 0 2 505 0 1 4 1 0 156 0 1 11 6 2 58 6 4 36 16 14 6 0 1 6 2 1 60 1 0 13 28 5 16 12 6 17 chain 49383 chr14 107349540 + 48671978 48672600 LTR12_ 688 + 0 688 59460 25 1 0 55 0 66 113 0 1 253 4 3 56 0 1 115 chain 37636 chr14 107349540 + 48672722 48673159 L1PA6 6164 + 5725 6162 72642 437 chain 30275 chr14 107349540 + 48724410 48724808 LTR7 482 - 9 482 84010 91 0 4 72 0 1 8 0 31 41 0 1 109 8 46 69 chain 312051 chr14 107349540 + 48726066 48729741 HERVH-int 3825 - 0 3825 12923 254 6 5 761 0 3 858 0 1 223 4 1 30 1 6 339 1 0 62 1 0 95 1 0 408 0 1 13 0 2 6 0 1 59 7 6 35 0 37 15 22 131 4 1 0 469 chain 41541 chr14 107349540 + 48733264 48733855 HERVH-int 3825 - 0 805 67233 225 0 2 149 39 39 72 8 218 39 9 11 50 chain 86951 chr14 107349540 + 48733855 48734874 HERVH-int 3825 - 806 1815 40802 675 19 8 38 0 1 287 chain 26096 chr14 107349540 + 48734874 48735164 HERVH-int 3825 - 1819 2109 99642 290 chain 6608 chr14 107349540 + 48735168 48735243 HERVH-int 3825 - 2140 2215 180404 75 chain 70014 chr14 107349540 + 48735243 48736085 HERVH-int 3825 - 2218 3046 48389 378 15 0 357 1 0 8 0 1 12 0 1 71 chain 4104 chr14 107349540 + 48736098 48736148 HERVH-int 3825 - 3062 3113 205893 6 0 1 44 chain 2436 chr14 107349540 + 48736149 48736182 HERVH-int 3825 - 3134 3167 233904 33 chain 50512 chr14 107349540 + 48736246 48737072 HERVH-int 3825 - 3167 3825 58642 20 23 0 7 133 0 13 2 1 20 15 5 12 1 0 10 1 0 39 1 0 155 0 2 374 chain 27077 chr14 107349540 + 48737074 48737485 LTR7 482 - 0 482 96010 176 10 42 36 8 9 104 23 61 54 chain 16634 chr14 107349540 + 48737496 48737910 L1MA4 2864 - 501 921 136572 23 36 34 55 50 49 12 1 0 54 21 20 18 17 19 9 0 3 40 1 0 10 13 20 54 chain 516840 chr14 107349540 + 48749102 48755056 L1PA4 6152 - 1 6151 5505 96 0 1 682 1 0 70 0 2 378 0 190 1544 6 5 1274 1 0 199 1 0 255 0 4 287 0 3 1160 chain 28146 chr14 107349540 + 48763867 48764163 AluYg6 310 + 0 296 92476 296 chain 3269 chr14 107349540 + 48776676 48776717 Tigger5 388 - 331 372 219614 41 chain 136513 chr14 107349540 + 48783212 48784697 L1PA2 6032 + 4542 6032 26743 640 0 4 700 0 1 145 chain 4061 chr14 107349540 + 48788835 48788881 MLT2B4 540 + 427 473 206480 46 chain 34379 chr14 107349540 + 48796790 48797203 L1PA4 6152 - 0 419 77094 6 0 7 83 0 1 57 4 3 97 1 0 165 chain 10923 chr14 107349540 + 48807723 48807847 L1PA3long 6157 - 862 986 155144 124 chain 75270 chr14 107349540 + 48807847 48808672 L1PA3long 6157 + 5332 6157 45885 414 0 1 151 1 0 259 chain 29794 chr14 107349540 + 48824149 48824459 AluYa5 310 - 0 310 85481 310 chain 30376 chr14 107349540 + 48826822 48827138 AluYb8 318 + 0 316 83718 316 chain 529082 chr14 107349540 + 48835471 48841600 L1PA4 6152 - 0 6145 4290 6 0 5 846 0 1 191 0 2 749 10 14 89 0 1 249 1 0 5 0 3 11 0 1 1665 0 1 1077 1 0 1229 chain 3689 chr14 107349540 + 48864650 48864769 MER5A1 166 + 41 159 212117 39 18 18 12 36 35 14 chain 413745 chr14 107349540 + 48878684 48886098 L1PA4 6152 - 4 4772 9705 61 0 1 179 1 3 6 1 0 334 0 1 256 0 6 1011 1 2 778 0 1 246 2670 0 572 1 0 4 0 1 107 0 13 1186 chain 98410 chr14 107349540 + 48881572 48882695 L1PA3long 6157 - 0 1139 37190 720 0 1 190 0 15 213 chain 138363 chr14 107349540 + 48882698 48884228 L1PA3long 6157 + 3481 5010 26422 136 1 0 1393 chain 14725 chr14 107349540 + 48907909 48908069 L1PA4 6152 - 1644 1804 142181 160 chain 21385 chr14 107349540 + 48908069 48908326 L1PA4 6152 - 1808 2077 121638 79 0 3 38 1 10 139 chain 134381 chr14 107349540 + 48908326 48909839 L1PA4 6152 + 4514 6021 27135 334 1 0 450 0 4 706 9 0 13 chain 82775 chr14 107349540 + 48911273 48912311 L1PA7 6471 + 5424 6459 42430 42 3 8 147 2 0 52 2 1 36 1 0 115 6 5 272 4 0 30 1 2 325 chain 349558 chr14 107349540 + 48913077 48917391 L1PA7 6471 + 2109 6466 11623 529 5 0 706 3 11 453 0 1 27 1 0 158 18 8 70 0 17 127 0 5 289 0 1 154 5 17 243 0 1 153 0 8 534 0 3 74 16 14 425 0 2 121 0 3 203 chain 38569 chr14 107349540 + 48922269 48922687 L1PA2 6032 - 0 418 71340 418 chain 76399 chr14 107349540 + 48922688 48923547 L1P1 4361 + 3471 4328 45264 679 1 0 155 1 0 23 chain 435751 chr14 107349540 + 48950705 48955698 L1PA4 6152 + 1146 6143 9173 301 0 2 128 0 3 451 0 1 412 0 4 220 0 1 979 0 1 6 3 0 32 0 2 940 1 0 274 0 1 60 22 0 47 0 13 277 0 1 676 5 6 159 chain 26872 chr14 107349540 + 48964047 48964417 THE1C 375 + 0 375 96734 18 0 1 123 7 11 90 10 11 95 1 0 26 chain 13644 chr14 107349540 + 49012265 49012440 L1PB 1623 + 1229 1400 145798 78 4 0 93 chain 10290 chr14 107349540 + 49012469 49012641 L1PB1 5432 + 5237 5391 159181 44 1 0 15 3 0 15 9 0 16 3 1 4 1 0 14 2 0 45 chain 89868 chr14 107349540 + 49013121 49014256 L1PA5 6144 - 0 1054 39693 11 3 1 126 0 7 12 28 0 345 58 0 552 chain 52099 chr14 107349540 + 49028948 49029588 HERVIP10FH-int 2884 + 164 801 57566 24 0 1 202 11 12 87 6 1 310 chain 6575 chr14 107349540 + 49036127 49036239 MER51B 395 - 4 129 180661 27 12 13 42 3 15 28 chain 504102 chr14 107349540 + 49039438 49045587 L1PA6 6164 - 2 6164 6592 135 7 0 9 8 15 61 2 5 130 5 4 896 0 1 253 12 12 352 0 1 1887 0 3 70 6 9 687 1 0 195 4 5 682 6 8 232 2 1 242 5 6 65 35 37 8 1 0 151 chain 58761 chr14 107349540 + 49059233 49059902 L1PA5 6144 - 3213 3882 53436 669 chain 273026 chr14 107349540 + 49059902 49063075 L1PA5 6144 + 2933 6127 15016 230 0 2 4 1 0 354 0 1 151 1 0 229 0 1 303 0 9 38 0 3 399 0 1 641 0 3 87 1 4 177 1 2 319 1 0 236 chain 98754 chr14 107349540 + 49065250 49066351 L1PA4 6152 - 0 1101 37086 1101 chain 51657 chr14 107349540 + 49067800 49068419 SVA_B 1603 + 778 1597 57858 16 10 174 47 1 0 4 4 41 537 chain 512058 chr14 107349540 + 49075945 49082037 L1PA5 6144 + 0 6135 5973 127 1 15 12 0 12 989 0 1 13 9 0 66 0 1 598 0 5 194 0 4 742 1 3 376 0 1 126 1 0 397 1 0 147 0 6 511 1 5 247 0 1 59 2 1 55 0 2 657 0 1 97 1 2 662 chain 54158 chr14 107349540 + 49084157 49084828 LTR12_ 688 + 0 687 56254 218 0 1 47 9 23 7 0 1 390 chain 106165 chr14 107349540 + 49099593 49100926 L1PA8A 6298 - 7 1356 35222 119 0 1 599 0 2 73 1 8 145 0 5 124 1 2 5 1 0 68 0 1 197 chain 348752 chr14 107349540 + 49106187 49111011 L1PB1 5432 + 630 5413 11646 765 1 0 7 8 0 7 18 9 127 0 4 142 0 1 119 1 0 4 0 1 324 5 7 339 39 0 11 5 32 81 0 1 15 0 3 189 1 0 22 8 7 88 0 4 64 0 2 92 0 1 148 1 2 231 0 1 118 1 0 126 13 8 314 6 3 568 5 6 113 0 10 59 0 8 101 0 20 112 0 1 5 1 0 39 5 0 7 1 0 4 34 12 24 2 0 5 21 16 10 2 0 51 2 1 16 1 0 43 1 0 19 63 47 24 1 0 21 1 0 13 1 0 9 chain 71996 chr14 107349540 + 49127681 49128479 L1PA3long 6157 - 0 815 47474 5 0 2 421 0 15 372 chain 93207 chr14 107349540 + 49128480 49129521 L1PA3long 6157 + 4300 5346 38597 1007 0 5 34 chain 6356 chr14 107349540 + 49147184 49147266 Charlie1a 1436 - 1232 1314 182339 82 chain 22899 chr14 107349540 + 49155211 49155506 L1PA7 6471 - 1 292 116115 6 5 0 151 5 6 128 chain 416512 chr14 107349540 + 49166394 49171525 L1P2 5180 + 2 5178 9625 110 12 11 20 0 11 93 5 4 256 1 0 8 1 0 203 7 6 53 6 21 135 0 25 25 0 3 9 3 0 413 6 1 6 0 5 13 5 0 313 5 6 294 17 21 309 0 1 2296 0 1 416 1 0 46 1 0 38 1 0 4 chain 25667 chr14 107349540 + 49171772 49172078 L1P1 4361 - 4054 4360 101413 306 chain 42046 chr14 107349540 + 49190024 49190806 L1PA15 4387 + 3578 4327 66564 71 1 0 8 3 0 11 40 4 15 0 28 65 0 1 29 2 0 20 11 6 52 3 1 10 19 15 19 1 0 74 1 0 97 2 1 13 17 21 46 1 0 22 3 0 9 2 1 32 24 21 44 3 1 12 chain 66187 chr14 107349540 + 49215519 49216315 LTR17 781 + 0 781 50011 299 10 0 28 0 1 406 0 1 37 7 0 9 chain 3474 chr14 107349540 + 49229212 49229253 L1PB1 5432 + 5236 5277 215748 41 chain 2225 chr14 107349540 + 49229366 49229398 L1PB1 5432 + 5370 5401 236280 23 1 0 8 chain 37922 chr14 107349540 + 49234597 49235192 L1MA2 4263 + 1926 2523 72247 43 1 2 39 2 0 67 6 5 90 1 4 40 71 72 235 chain 8836 chr14 107349540 + 49246633 49246878 MSTA 426 + 137 405 166458 57 67 69 28 42 63 51 chain 7256 chr14 107349540 + 49253243 49253325 L1PA4 6152 + 5735 5817 175728 82 chain 30123 chr14 107349540 + 49253325 49253658 L1PA4 6152 + 5818 6151 84402 333 chain 498682 chr14 107349540 + 49261367 49268082 L1PA7 6471 + 0 6469 6916 244 0 10 62 24 13 74 0 1 191 7 5 152 1 0 99 1 0 616 16 12 193 23 27 70 1 5 196 3 4 60 0 1 601 1 2 540 0 1 229 15 13 82 1 0 26 16 19 33 0 1 253 0 1 294 0 1 4 6 5 494 0 1 33 0 4 156 2 0 36 271 5 80 1 0 215 1 0 415 1 2 18 0 4 19 0 7 43 6 7 20 4 3 434 0 1 178 0 1 6 1 0 147 chain 20528 chr14 107349540 + 49266232 49266462 L1PA5 6144 + 5896 6126 125548 230 chain 19602 chr14 107349540 + 49336728 49337095 THE1D 372 - 2 370 128380 129 17 21 17 32 37 75 46 38 51 chain 25340 chr14 107349540 + 49347367 49347667 AluSp 311 - 8 311 103018 209 0 3 91 chain 2989 chr14 107349540 + 49374955 49374988 L1MC1 2226 + 1994 2027 225238 33 chain 13122 chr14 107349540 + 49379091 49379281 L1PA8 5853 + 5663 5849 147758 16 2 1 7 2 1 56 1 0 16 2 1 88 chain 4794 chr14 107349540 + 49396684 49396754 L1PA7 6471 + 5736 5807 197422 66 0 1 4 chain 54735 chr14 107349540 + 49396755 49397415 L1PA7 6471 + 5807 6466 55879 330 1 0 329 chain 68252 chr14 107349540 + 49409851 49410602 L1PA3long 6157 - 0 751 49139 751 chain 25082 chr14 107349540 + 49411165 49411565 THE1D 372 + 0 372 104395 15 0 2 34 18 9 15 19 0 100 1 0 6 31 30 161 chain 27269 chr14 107349540 + 49422740 49423049 L1PA4 6152 - 9 318 95374 309 chain 4309 chr14 107349540 + 49434563 49434637 MLT1E1A 663 - 29 90 203111 16 15 2 43 chain 64968 chr14 107349540 + 49447310 49448098 L1PA8A 6298 - 7 805 50588 107 0 7 145 0 1 461 0 2 75 chain 4663 chr14 107349540 + 49471324 49471378 MER33 330 - 271 325 198926 54 chain 29094 chr14 107349540 + 49472046 49472355 AluYa5 310 - 1 310 88578 309 chain 120358 chr14 107349540 + 49492975 49494533 THE1B-int 1605 + 0 1600 30920 33 11 12 193 0 1 191 0 25 280 26 24 649 0 2 102 0 15 73 chain 437191 chr14 107349540 + 49529229 49534640 L1PA7 6471 + 1055 6464 9119 358 6 1 325 0 1 288 2 1 19 15 15 79 1 2 160 14 15 52 34 10 104 0 1 78 1 3 63 1 4 598 0 1 143 4 0 14 1 0 4 0 1 278 0 1 146 21 9 126 0 1 772 0 1 44 0 8 174 0 1 228 0 1 5 2 1 111 0 1 317 2 1 82 0 1 160 0 14 35 0 6 532 0 1 12 chain 109281 chr14 107349540 + 49537895 49540091 L1M1 2793 + 522 2682 34377 20 14 11 8 3 0 9 1 0 9 163 88 35 122 132 5 1 0 54 29 27 83 1 0 31 0 2 144 1 0 71 8 4 15 29 21 24 0 1 160 1 4 189 2 3 169 5 4 66 25 33 63 80 100 82 10 52 12 45 1 36 0 5 6 10 5 46 1 0 79 32 27 32 21 49 42 0 1 46 1 0 45 1 0 9 chain 5113 chr14 107349540 + 49542190 49542250 L1PA8 5853 + 5793 5853 193935 60 chain 8347 chr14 107349540 + 49545997 49546103 L1P4 1494 - 953 1059 169136 106 chain 19694 chr14 107349540 + 49552308 49552544 L1PA7 6471 - 14 254 128123 21 1 3 119 0 2 95 chain 3794 chr14 107349540 + 49554430 49554472 5S 121 + 0 42 210464 42 chain 74724 chr14 107349540 + 49560372 49561186 L1PA3long 6157 + 5342 6156 46151 814 chain 556851 chr14 107349540 + 49563432 49569450 L1PA2 6032 + 11 6029 626 6018 chain 44141 chr14 107349540 + 49586216 49586707 L1PA4 6152 + 5664 6152 64026 483 3 0 5 chain 509260 chr14 107349540 + 49592588 49598967 L1PA7 6471 - 5 6471 6223 42 6 10 37 0 8 8 9 1 57 0 10 31 4 5 80 12 16 537 0 3 276 1 2 206 0 2 300 15 13 197 1 0 454 6 5 13 0 1 23 0 1 26 4 5 74 30 19 6 3 0 17 1 0 155 0 4 210 0 1 58 0 4 118 0 91 63 3 5 631 14 0 327 0 1 203 1 2 74 2 1 4 0 1 397 0 1 612 6 8 138 1 0 13 1 2 56 0 1 174 28 13 415 2 1 197 chain 536882 chr14 107349540 + 49610676 49616853 L1PA4 6152 - 0 6146 3328 6 3 0 9 0 4 94 0 1 225 0 1 1147 0 1 747 23 0 1469 0 4 284 0 1 63 11 0 583 15 13 50 0 1 756 0 1 112 1 0 113 30 24 59 10 11 367 chain 29421 chr14 107349540 + 49631878 49632329 MLT2A2 560 - 0 560 86983 51 51 52 44 7 115 6 0 1 111 1 0 180 chain 441534 chr14 107349540 + 49644897 49650521 L1PA7 6471 + 3 6464 9012 409 1 0 728 0 8 201 8 7 576 3 7 147 0 1 281 3 794 173 0 1 9 8 0 7 5 12 133 1 0 26 0 6 45 5 8 30 1 0 294 0 1 24 6 8 70 1 0 16 7 10 12 2 1 298 29 16 78 0 2 289 5 27 860 17 16 57 0 4 582 0 1 118 6 15 53 chain 6396 chr14 107349540 + 49661837 49661915 MLT1A 405 + 311 389 182058 78 chain 4304 chr14 107349540 + 49663260 49663315 MLT1K 546 + 490 544 203165 19 1 0 35 chain 28354 chr14 107349540 + 49690687 49691076 MLT2A1 477 - 86 477 91750 6 4 0 62 1 0 75 0 1 74 1 5 17 10 11 77 0 1 62 chain 71442 chr14 107349540 + 49712722 49713607 L1P3 4156 + 3256 4139 47725 238 1 0 332 0 1 24 0 1 253 4 2 6 1 0 26 chain 25948 chr14 107349540 + 49734411 49734787 THE1C 375 + 1 375 100222 184 26 28 11 1 0 4 1 2 26 4 0 119 chain 11023 chr14 107349540 + 49735969 49736102 THE1C-int 1605 - 1210 1349 156119 62 0 6 71 chain 11559 chr14 107349540 + 49736819 49736958 THE1C-int 1605 + 1460 1600 154071 132 0 1 7 chain 26076 chr14 107349540 + 49736963 49737334 THE1C 375 + 0 373 99721 104 5 6 15 3 0 59 16 20 169 chain 59595 chr14 107349540 + 49740195 49741094 L1PA11 4918 - 340 1214 53055 11 2 0 13 1 0 15 51 38 13 1 0 6 12 10 65 2 0 13 2 1 62 7 0 195 10 11 210 2 1 195 1 5 10 chain 3992 chr14 107349540 + 49743858 49743910 MER5B 177 + 0 51 207499 45 1 0 6 chain 75274 chr14 107349540 + 49766927 49767849 L1PA8A 6298 - 22 936 45882 38 11 6 47 1 0 304 2 1 390 2 1 127 chain 30462 chr14 107349540 + 49774275 49774761 MER41A 554 - 88 548 83509 56 0 17 36 78 34 225 11 12 80 chain 11177 chr14 107349540 + 49774776 49774913 MER41-int 2638 - 2 139 155531 137 chain 453017 chr14 107349540 + 49815303 49820989 L1PA7 6471 - 2 5724 8650 68 0 2 5 2 0 181 0 1 68 5 7 252 0 1 90 0 1 165 9 6 123 1 2 372 1 0 448 0 4 166 0 2 333 1 2 282 1 0 112 2 23 151 6 7 72 12 8 96 0 2 251 11 9 46 1 0 297 0 2 179 0 1 200 14 14 347 0 1 459 1 0 211 0 3 100 44 26 241 0 24 11 6 5 88 4 0 6 4 8 141 chain 518104 chr14 107349540 + 49823316 49829455 L1PA6 6164 + 0 6162 5369 236 0 1 12 10 11 307 1 0 220 0 17 755 0 1 433 1 0 524 0 1 4 3 2 332 4 5 222 1 0 4 0 1 136 0 3 476 3 1 250 0 1 687 2 1 164 2 0 512 0 4 220 0 1 618 chain 338674 chr14 107349540 + 49852140 49857447 L1PA8 5853 + 1621 5846 11934 49 4 14 191 1 0 25 0 4 772 3 4 99 5 1 108 2 0 173 2 1 342 0 5 698 0 2 261 2 0 201 0 1 24 1 2 74 0 1 43 13 14 17 2 1 261 0 2 83 1 0 146 1099 8 316 2 1 45 2 0 69 1 0 21 2 1 39 3 2 18 1 0 86 chain 77601 chr14 107349540 + 49855770 49856837 MER11C 1089 - 20 1089 44692 4 0 1 144 1 0 54 0 1 90 9 1 36 0 1 38 1 0 7 0 4 12 1 0 81 16 13 10 41 40 146 1 0 45 1 0 24 0 4 57 0 9 228 1 0 19 chain 47401 chr14 107349540 + 49857823 49858559 L1PA15 4387 + 126 830 60901 75 10 11 67 36 0 18 8 22 303 49 38 170 chain 285480 chr14 107349540 + 49859643 49863170 L1PA7 6471 + 0 6470 14321 121 0 2332 493 0 1 537 3 2 17 2 0 19 1 2 484 1 0 4 7 9 727 0 1 384 0 597 103 0 10 201 0 1 86 0 1 38 0 1 299 chain 3742 chr14 107349540 + 49868329 49868453 MER33 330 + 26 179 211297 19 63 92 42 chain 26032 chr14 107349540 + 49902768 49903079 AluSq 315 + 0 309 99892 134 3 1 174 chain 24621 chr14 107349540 + 49916005 49916605 MER51E 476 - 20 476 106886 29 49 50 16 3 0 42 24 33 18 1 2 4 1 0 40 3 7 71 159 3 8 0 1 132 chain 23918 chr14 107349540 + 49925670 49926023 THE1D 372 + 0 372 110825 100 3 0 29 1 5 35 19 28 41 1 8 10 0 2 114 chain 20620 chr14 107349540 + 49968163 49968467 LTR32 486 - 198 486 125224 128 26 11 68 1 0 81 chain 14461 chr14 107349540 + 49984508 49984792 L1PB1 5432 + 5152 5408 143013 6 4 0 11 2 0 51 2 1 16 1 0 44 19 15 17 9 1 11 2 0 7 1 0 14 2 0 24 1 0 22 1 0 12 1 0 4 chain 193914 chr14 107349540 + 49995347 49999398 L1MA2 4263 + 1321 4111 19688 12 0 1 37 314 13 10 1 4 144 15 11 45 1 2 225 0 1 140 28 27 19 1 0 52 655 0 37 0 1 281 0 2 48 4 0 61 314 9 53 2 0 66 7 8 11 6 5 109 21 23 130 5 6 160 0 1 81 11 13 59 8 28 289 0 1 20 1 0 18 9 4 74 1 0 98 4 0 36 13 10 152 9 7 93 7 0 47 1 0 6 chain 166987 chr14 107349540 + 50000969 50002796 L1PA3long 6157 + 4329 6157 22397 1823 0 1 4 chain 24137 chr14 107349540 + 50028250 50028601 THE1B 368 + 0 368 109539 41 1 16 115 3 2 33 20 21 67 2 0 6 0 4 63 chain 45214 chr14 107349540 + 50028730 50029333 L1PA16 3655 - 1026 1643 62813 22 0 1 353 6 14 46 1 6 175 chain 26486 chr14 107349540 + 50053304 50053596 7SLRNA 320 + 7 299 98094 292 chain 8411 chr14 107349540 + 50058957 50059054 HY3 101 - 3 100 168784 97 chain 6860 chr14 107349540 + 50115322 50115444 MER20 218 + 35 161 178501 15 1 0 15 23 28 68 chain 25882 chr14 107349540 + 50122791 50123090 AluYf4 310 + 0 298 100520 274 2 1 23 chain 6489 chr14 107349540 + 50126607 50126720 Tigger3b 1229 + 742 853 181339 28 3 0 7 2 1 30 6 8 37 chain 29073 chr14 107349540 + 50156949 50157256 AluYg6 310 - 3 310 88671 307 chain 8038 chr14 107349540 + 50162802 50162902 Tigger1 2417 - 1446 1546 170827 100 chain 23533 chr14 107349540 + 50165611 50165900 AluSc8 310 + 10 305 112945 32 0 1 90 0 3 141 0 2 26 chain 62631 chr14 107349540 + 50172997 50173903 L1MA2 4263 - 150 1040 51616 9 1 0 45 8 1 51 0 2 39 1 0 8 1 0 152 16 13 131 1 0 77 5 1 18 1 0 175 6 0 8 0 6 52 0 1 101 chain 35846 chr14 107349540 + 50188856 50189265 L1PA5 6144 - 9 430 75066 132 0 12 277 chain 11283 chr14 107349540 + 50192974 50193146 FAM 185 + 22 170 155115 106 10 0 35 14 0 7 chain 99805 chr14 107349540 + 50226252 50228455 L1M1 2793 - 122 2015 36825 40 7 10 46 0 1 26 5 0 50 0 2 62 7 0 144 1 5 82 1 0 96 2 1 81 0 4 40 0 3 14 0 1 21 0 5 266 1 0 14 704 402 75 4 5 127 9 0 41 14 13 93 1 0 5 5 3 54 49 45 16 chain 50367 chr14 107349540 + 50227265 50227850 L1PA7 6471 - 3 597 58740 180 0 7 54 2 1 211 1 5 115 1 0 21 chain 23061 chr14 107349540 + 50232876 50233154 AluSq10 312 + 4 283 115352 121 1 0 34 0 1 118 0 1 4 chain 22388 chr14 107349540 + 50243671 50244108 L1PB1 5432 + 5024 5423 118548 11 1 0 60 25 21 20 1 0 6 3 2 12 2 0 3 2 0 9 2 0 51 3 2 15 1 0 45 1 0 15 25 12 18 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 14 1 0 5 chain 25112 chr14 107349540 + 50272975 50273277 AluSg7 307 - 5 307 104217 302 chain 5611 chr14 107349540 + 50274803 50274867 L1MB7 1623 - 638 702 188970 64 chain 32791 chr14 107349540 + 50282857 50283380 MER11A 1151 + 0 1133 79548 58 1 100 93 59 535 17 1 0 16 6 40 84 1 0 27 1 2 85 0 2 74 chain 140891 chr14 107349540 + 50287337 50289001 SVA_D 2077 + 16 2056 26013 9 1 0 4 1 0 8 0 22 280 8 241 181 0 40 107 2 0 12 1 0 27 11 0 46 1 0 44 0 1 65 0 78 207 0 1 4 9 8 158 2 1 361 0 20 115 chain 4113 chr14 107349540 + 50306121 50306167 HY3 101 - 2 48 205728 46 chain 25457 chr14 107349540 + 50320340 50320625 7SLRNA 320 - 28 313 102426 285 chain 26447 chr14 107349540 + 50329268 50329560 7SLRNA 320 - 21 313 98247 292 chain 24377 chr14 107349540 + 50344420 50344699 AluSp 311 - 24 303 108207 279 chain 11373 chr14 107349540 + 50351403 50351538 LTR23 429 + 134 269 154804 135 chain 4181 chr14 107349540 + 50402192 50402241 MIR 256 + 87 136 204814 49 chain 27908 chr14 107349540 + 50403040 50403398 THE1B 368 + 0 368 93328 38 2 17 113 4 0 126 1 0 74 chain 116673 chr14 107349540 + 50403398 50405265 THE1B-int 1605 + 0 1600 32234 25 3 0 5 12 15 385 1 26 67 1 0 47 13 10 62 1 2 119 1 0 31 0 1 54 1 16 358 0 1 263 310 0 30 1 6 77 chain 17033 chr14 107349540 + 50405270 50406192 THE1B 368 + 0 293 135507 40 0 15 52 4 5 50 1 0 6 669 25 100 chain 6367 chr14 107349540 + 50406193 50406268 THE1B 368 + 293 368 182267 75 chain 27907 chr14 107349540 + 50409741 50410094 THE1B 368 + 2 368 93338 42 0 15 15 0 1 94 1 0 23 2 0 176 chain 2602 chr14 107349540 + 50443558 50443843 MLT1H1 527 - 35 315 231680 18 240 235 27 chain 4530 chr14 107349540 + 50479035 50479089 MER41B 635 - 95 150 200455 28 0 1 26 chain 21083 chr14 107349540 + 50497585 50497919 THE1B 368 - 0 365 123614 119 53 66 11 1 0 104 5 24 41 chain 3353 chr14 107349540 + 50511677 50511714 MER45A 178 - 34 71 218005 37 chain 2772 chr14 107349540 + 50512709 50512753 MLT1G 592 - 296 334 229177 5 2 0 11 4 0 22 chain 26069 chr14 107349540 + 50513074 50513457 LTR7 482 + 0 476 99753 101 15 14 14 1 52 19 1 11 13 5 37 46 0 1 168 chain 4968 chr14 107349540 + 50516753 50516825 MER5A1 166 + 39 105 195504 7 6 0 59 chain 17814 chr14 107349540 + 50535291 50535530 7SK 245 + 7 242 133356 121 11 11 39 4 0 64 chain 42668 chr14 107349540 + 50539574 50540137 L1P1 4361 + 4 1102 65820 61 1 2 23 0 525 303 3 11 35 0 1 4 9 8 58 0 2 4 1 0 61 chain 86704 chr14 107349540 + 50540706 50541650 SVA_F 1814 + 335 1814 40879 372 0 536 561 1 0 10 chain 452937 chr14 107349540 + 50541658 50546699 L1PA5 6144 + 1083 6125 8654 699 4 0 412 0 4 1177 0 1 2749 chain 8471 chr14 107349540 + 50553699 50553798 HY3 101 + 0 99 168450 99 chain 36975 chr14 107349540 + 50561537 50561983 L1PA5 6144 - 0 445 73546 105 8 7 60 0 2 6 3 1 264 chain 20878 chr14 107349540 + 50562201 50562513 AluSp 311 + 21 305 124368 32 23 5 166 3 0 66 7 0 15 chain 12484 chr14 107349540 + 50565334 50565524 MER2 342 - 127 326 150320 104 4 2 22 9 6 42 0 14 9 chain 9692 chr14 107349540 + 50682351 50682456 L1PA2 6032 + 5927 6032 162128 105 chain 26309 chr14 107349540 + 50686836 50687143 AluY 311 + 0 302 98793 133 5 0 169 chain 26991 chr14 107349540 + 50702312 50702677 THE1C 375 - 11 375 96311 13 2 1 91 1 0 120 0 4 10 3 0 125 chain 62045 chr14 107349540 + 50710407 50711071 L1PA3long 6157 - 5 669 51882 664 chain 125693 chr14 107349540 + 50718732 50720606 L1MA2 4263 + 9 4105 29189 13 1 0 76 0 1 12 8 9 37 7 5 7 4 0 11 1 6 56 5 9 12 7 8 8 5 0 32 1 0 22 1 0 117 11 10 22 1 0 137 14 5 171 0 4 359 6 2252 164 1 0 10 7 3 75 1 0 130 21 18 69 0 3 70 4 3 9 2 1 93 7 0 47 chain 9917 chr14 107349540 + 50755464 50755668 LTR54 533 + 323 533 160983 101 74 80 29 chain 4049 chr14 107349540 + 50757262 50757390 MER58B 340 - 63 196 206659 25 63 64 9 0 4 31 chain 22913 chr14 107349540 + 50759156 50759427 AluSp 311 + 14 286 116043 242 0 1 29 chain 25385 chr14 107349540 + 50780823 50781183 THE1B 368 + 0 368 102759 47 7 9 116 2 1 4 1 0 129 9 17 45 chain 136780 chr14 107349540 + 50781990 50784194 L1PB1 5432 - 155 2006 26683 41 18 16 43 349 20 10 1 0 7 1 0 23 3 0 12 1 2 52 1 0 271 2 1 116 0 2 39 1 3 121 16 26 442 1 2 95 0 3 21 41 0 179 9 12 61 19 21 106 5 7 97 chain 7050 chr14 107349540 + 50809199 50809348 MER53 195 - 14 170 177108 43 0 3 10 33 35 14 7 9 42 chain 108560 chr14 107349540 + 50828490 50830001 LTR12C 1709 + 0 1708 34546 205 1 29 39 21 23 42 0 43 83 14 0 25 0 1 113 6 7 40 0 119 68 7 6 134 0 41 91 12 9 90 24 0 16 11 4 160 0 10 181 0 2 46 1 0 81 chain 40403 chr14 107349540 + 50832354 50832864 MLT2A2 560 + 0 560 68731 190 6 22 102 0 1 87 0 32 55 0 1 70 chain 15921 chr14 107349540 + 50841596 50841813 L1PA8 5853 + 5632 5845 138604 50 1 0 15 1 0 39 6 5 19 1 0 85 chain 9903 chr14 107349540 + 50882329 50882839 L1MA8 2339 - 800 1034 161052 44 6 0 9 351 56 60 0 20 24 0 5 16 chain 55996 chr14 107349540 + 50897974 50898590 L1PA3long 6157 - 1 618 55124 78 0 1 538 chain 4324 chr14 107349540 + 50938043 50938094 HY3 101 - 2 53 202902 51 chain 81175 chr14 107349540 + 50973991 50974937 L1P1 4361 - 1139 2090 43100 156 0 4 360 5 0 9 5 10 222 0 1 189 chain 42965 chr14 107349540 + 50974942 50975441 L1PA5 6144 + 5641 6141 65456 169 0 1 330 chain 47946 chr14 107349540 + 50975441 50975999 L1PA6 6164 + 5497 6054 60527 335 1 0 222 chain 24571 chr14 107349540 + 51002517 51002871 THE1B 368 + 0 368 107131 44 0 15 36 0 1 76 1 0 23 2 0 20 10 11 39 4 5 23 1 0 75 chain 120335 chr14 107349540 + 51003215 51004746 THE1B-int 1605 + 45 1600 30927 146 1 2 52 0 1 180 5 30 691 9 6 17 0 1 300 1 0 129 chain 17620 chr14 107349540 + 51008916 51009177 L1PA8 5853 + 5608 5853 133935 74 2 0 5 13 1 51 6 5 16 2 1 92 chain 14989 chr14 107349540 + 51013555 51013734 L1PA7 6471 - 1 178 141356 9 2 0 168 chain 212008 chr14 107349540 + 51017361 51020456 L1PB2 3958 + 816 3838 18364 213 0 3 109 0 12 26 0 4 25 0 1 21 1 0 26 11 12 239 0 1 360 0 1 82 31 43 48 0 1 296 1 4 142 10 0 65 0 3 162 1 3 56 0 1 149 16 15 85 0 3 194 273 171 45 3 1 13 3 0 20 0 4 70 1 0 72 1 0 64 1 0 73 2 0 21 1 0 63 chain 24182 chr14 107349540 + 51039537 51039914 THE1C 375 - 2 375 109314 259 6 7 24 39 36 34 2 0 13 chain 23965 chr14 107349540 + 51051139 51051433 AluY 311 + 0 289 110538 131 19 14 144 chain 19065 chr14 107349540 + 51060765 51061121 THE1C 375 - 37 375 129924 95 6 0 6 6 9 34 15 16 25 1 2 30 32 16 17 1 2 72 2 0 14 chain 18685 chr14 107349540 + 51108985 51109235 AluSp 311 + 61 310 130979 71 19 18 160 chain 3658 chr14 107349540 + 51110787 51110832 MER33 330 - 217 263 212599 22 0 1 23 chain 2992 chr14 107349540 + 51142702 51142733 LTR32 486 + 333 364 225203 31 chain 5447 chr14 107349540 + 51145785 51145854 L1MA5 2750 - 141 209 190552 45 1 0 23 chain 29633 chr14 107349540 + 51145862 51146316 LTR7B 505 - 8 505 86118 43 14 13 52 0 1 29 1 0 38 1 2 39 29 0 28 6 68 69 0 10 105 chain 54991 chr14 107349540 + 51150172 51151452 L1MA1 4479 - 289 1322 55712 14 1 0 4 6 0 13 6 2 6 1 0 9 9 8 26 2 0 30 1 0 20 0 3 103 3 0 5 1 0 88 3 1 20 6 4 8 1 0 63 33 30 11 12 11 39 309 0 85 21 105 93 4 0 50 0 2 22 1 0 42 16 11 11 1 0 34 1 14 46 chain 21086 chr14 107349540 + 51161886 51162151 THE1B-int 1605 - 1341 1605 123592 180 2 1 83 chain 26074 chr14 107349540 + 51164226 51164563 THE1C 375 - 33 375 99733 156 5 6 34 0 4 142 chain 173735 chr14 107349540 + 51165095 51168147 L1PA14 3548 - 92 2865 21620 11 0 2 9 0 3 17 1 0 9 1 2 5 1 0 11 1 0 10 4 2 33 5 1 7 91 0 10 0 88 15 6 5 53 1 0 5 1 0 21 34 27 105 1 0 7 2 0 45 2 0 13 2 0 27 3 0 64 23 27 37 8 19 175 11 0 14 0 1 4 0 2 31 5 4 40 0 1 251 0 2 72 0 12 171 37 23 55 19 18 109 0 4 68 0 1 78 0 2 87 0 3 31 5 6 26 4 0 24 8 7 70 0 4 38 312 0 120 0 1 55 4 7 44 0 5 11 15 17 70 0 23 21 0 3 61 0 1 27 0 3 61 0 2 117 chain 4395 chr14 107349540 + 51186375 51186431 MER5A1 166 - 48 104 202007 56 chain 18363 chr14 107349540 + 51232564 51232775 L1PA2 6032 - 0 209 131898 9 2 0 200 chain 3075 chr14 107349540 + 51248480 51248516 MIR 256 + 195 231 223426 36 chain 14217 chr14 107349540 + 51271413 51271645 MER30 238 - 0 238 143825 28 11 14 59 2 0 12 11 22 13 6 0 90 chain 62762 chr14 107349540 + 51281292 51282085 L1PA11 4918 + 3703 4489 51557 54 1 2 569 5 0 65 2 1 71 11 9 15 chain 24824 chr14 107349540 + 51319882 51320172 AluYk4 311 - 23 311 105750 165 2 0 123 chain 23903 chr14 107349540 + 51330514 51330808 AluY 311 + 0 290 110894 78 5 0 49 1 2 161 chain 37969 chr14 107349540 + 51359879 51360328 LTR7 482 + 0 482 72174 221 1 2 24 0 31 27 0 1 176 chain 223273 chr14 107349540 + 51360330 51362994 HERVH-int 3825 + 0 2675 17698 532 5 0 38 1 0 10 1 0 4 9 5 14 83 73 20 2 1 66 0 2 13 0 3 171 0 1 732 4 31 959 chain 12172 chr14 107349540 + 51363109 51363247 LTR7 482 + 0 138 151530 138 chain 18871 chr14 107349540 + 51363378 51363598 LTR7 482 + 261 482 130451 44 0 1 176 chain 36677 chr14 107349540 + 51384666 51385169 L1PB2 3958 + 3330 3818 73990 33 1 0 31 0 1 40 5 3 12 5 1 94 1 0 50 1 0 23 1 0 63 1 0 68 4 0 26 1 0 43 chain 16877 chr14 107349540 + 51404694 51405322 MER41B 635 + 1 612 135899 125 2 3 36 372 350 41 13 17 39 chain 131054 chr14 107349540 + 51416142 51417580 L1PA3long 6157 + 4697 6156 27844 671 0 21 767 chain 27788 chr14 107349540 + 51419437 51419885 LTR7B 505 + 0 491 93742 105 0 10 60 0 93 12 60 0 39 1 2 41 1 0 79 14 13 22 0 1 14 chain 84896 chr14 107349540 + 51422999 51423996 SVA_B 1603 - 339 1602 41555 198 0 37 52 0 42 16 0 82 201 2 0 43 0 116 430 18 5 21 0 4 16 chain 19098 chr14 107349540 + 51434560 51434876 LTR73 568 + 9 326 129821 32 17 22 144 0 19 13 19 0 34 4 0 53 chain 17594 chr14 107349540 + 51437092 51437301 AluSp 311 + 85 294 134013 209 chain 20980 chr14 107349540 + 51482939 51483190 MER1B 344 + 0 276 123988 86 0 25 165 chain 20123 chr14 107349540 + 51516917 51517271 THE1B 368 + 0 368 126760 55 0 9 47 5 6 52 39 36 4 1 0 4 0 1 10 10 18 64 7 6 56 chain 20151 chr14 107349540 + 51520314 51520531 L1HS 6032 - 0 217 126667 217 chain 42734 chr14 107349540 + 51578021 51578580 L1PA8 5853 + 5305 5853 65738 93 7 0 166 1 0 46 2 0 70 17 15 45 2 1 19 1 0 18 0 3 72 chain 203318 chr14 107349540 + 51591952 51594715 L1PB1 5432 - 10 2738 18973 13 0 1 4 1 0 8 5 4 22 1 0 24 2 0 14 1 0 8 2 0 16 28 15 7 0 1 4 1 0 43 6 5 12 2 1 48 21 16 12 1 0 9 1 0 19 15 13 230 1 0 60 9 9 125 0 3 54 0 1 314 0 5 300 5 6 269 11 0 176 10 9 700 3 0 6 0 2 140 chain 2985 chr14 107349540 + 51596654 51596691 MLT1E1A 663 + 625 663 225346 21 0 1 16 chain 455920 chr14 107349540 + 51598270 51604610 L1PA8A 6298 + 555 6291 8547 451 6 7 80 0 4 20 1 4 11 12 0 10 1 0 6 0 1 35 43 42 130 6 7 344 9 10 67 0 1 247 0 4 474 312 0 67 0 1 86 0 5 33 0 2 40 0 2 140 1 2 77 0 4 423 308 0 6 0 4 176 0 3 117 18 0 180 0 1 191 0 1 19 0 1 193 1 0 45 1 2 143 0 2 669 0 1 343 1 2 35 0 2 52 8 1 566 0 5 27 6 0 6 0 6 69 0 3 28 chain 28983 chr14 107349540 + 51601402 51601707 AluYa5 310 - 5 310 89079 305 chain 188642 chr14 107349540 + 51618466 51620527 L1PA3long 6157 + 4092 6157 20181 1218 0 4 843 chain 7365 chr14 107349540 + 51639969 51640118 L1MB3 1562 - 291 436 175005 69 39 38 16 3 0 22 chain 3289 chr14 107349540 + 51642613 51642649 MLT2B2 565 + 529 565 219208 36 chain 256892 chr14 107349540 + 51680345 51683292 L1PA5 6144 - 4 2965 15890 149 1 0 6 28 38 652 0 1 4 8 11 555 0 4 90 10 4 26 0 1 512 0 1 154 0 1 752 chain 48631 chr14 107349540 + 51687056 51687594 L1PA4 6152 - 11 550 60006 102 0 1 436 chain 22472 chr14 107349540 + 51688553 51688907 THE1B 368 - 0 368 118144 58 8 6 95 10 11 25 2 1 18 0 1 67 27 42 44 chain 123132 chr14 107349540 + 51688912 51690631 THE1B-int 1605 - 5 1605 29997 4 0 1 283 165 9 100 1 2 134 5 6 227 1 10 368 1 26 256 1 0 4 0 1 169 chain 5534 chr14 107349540 + 51690658 51690764 THE1B 368 - 27 137 189724 41 28 32 37 chain 12462 chr14 107349540 + 51690770 51690917 THE1B 368 - 196 358 150411 113 0 15 34 chain 40406 chr14 107349540 + 51692907 51693364 L1PA3long 6157 - 0 458 68726 90 0 1 367 chain 7351 chr14 107349540 + 51703249 51703390 MSTB2 466 - 325 466 175086 15 26 28 35 0 1 5 1 0 34 2 0 23 chain 31054 chr14 107349540 + 51704902 51705361 MER4A1 472 - 2 471 82432 129 10 5 94 17 0 6 0 16 65 0 1 40 11 26 87 chain 29944 chr14 107349540 + 51743301 51743681 MER51B 395 - 11 395 84988 49 0 4 331 chain 18208 chr14 107349540 + 51771105 51771445 THE1B 368 + 0 368 132316 36 10 4 68 11 9 60 64 100 91 chain 123183 chr14 107349540 + 51778944 51780302 L1PA3long 6157 - 0 1360 29983 148 1 2 259 0 1 950 chain 13321 chr14 107349540 + 51814458 51814733 MSTA 426 + 0 408 147003 56 13 12 30 52 167 5 3 0 22 3 25 91 chain 55758 chr14 107349540 + 51833338 51833936 SVA_A 1864 + 1266 1864 55267 598 chain 238609 chr14 107349540 + 51840566 51843533 HERVL-int 5654 + 830 3790 16848 38 2 0 485 5 11 6 6 0 19 0 3 40 0 2 261 0 1 179 0 1 269 8 0 398 0 1 104 0 2 312 13 7 176 3 2 162 5 4 72 0 1 404 chain 32412 chr14 107349540 + 51844004 51844428 HERVL-int 5654 - 4818 5247 80187 6 0 4 177 1 0 126 10 12 104 chain 35091 chr14 107349540 + 51844445 51844884 MLT2A2 560 - 118 560 76063 88 0 2 147 5 6 199 chain 12073 chr14 107349540 + 51856775 51856977 L1MB1 2102 - 594 774 151885 47 0 1 30 5 6 8 19 0 43 5 0 45 chain 22802 chr14 107349540 + 51869031 51869346 THE1B 368 + 2 337 116569 11 2 0 23 0 22 13 5 6 95 2 1 164 chain 36083 chr14 107349540 + 51872696 51873387 L1PREC2 3366 - 318 981 74783 38 16 14 25 37 20 24 71 63 10 3 0 4 1 0 40 21 20 38 3 1 27 4 7 33 1 3 93 0 1 202 chain 2671 chr14 107349540 + 51879030 51879680 PRIMA4_LTR 623 - 0 388 84167 58 2 0 11 0 2 167 0 1 9 317 53 12 1 0 47 1 3 25 chain 529200 chr14 107349540 + 51879891 51886028 L1PA6 6164 - 12 6161 4276 5 1 0 415 0 1 187 1 0 4 0 1 215 6 12 669 1 0 132 0 4 453 4 0 99 0 1 47 0 2 535 0 1 179 0 1 973 4 6 218 0 1 280 0 1 721 6 5 519 1 0 462 chain 896 chr14 107349540 + 51886163 51886381 PRIMA4_LTR 623 - 403 621 84167 218 chain 26375 chr14 107349540 + 51903707 51904023 L1PA6 6164 - 2 317 98512 6 3 0 9 0 1 54 0 1 244 chain 33041 chr14 107349540 + 51922873 51923282 L1PA7 6471 - 4 411 79149 34 2 1 301 4 3 68 chain 24595 chr14 107349540 + 51926281 51926565 AluY 311 + 18 303 107018 116 0 1 168 chain 11241 chr14 107349540 + 51930033 51930176 MER2B 336 - 108 263 155257 57 0 12 86 chain 114868 chr14 107349540 + 51933686 51935053 SVA_B 1603 - 2 1603 32828 451 1 0 6 6 7 135 1 205 133 0 37 431 1 0 155 26 20 21 chain 6941 chr14 107349540 + 51953698 51953784 MER5A 189 + 25 111 177884 86 chain 167277 chr14 107349540 + 51968456 51970849 L1PA11 4918 - 289 2651 22360 18 120 94 9 4 0 20 5 4 10 2 0 58 16 14 7 1 0 70 1 0 7 1 5 35 1 20 396 2 1 21 0 1 169 0 1 108 0 1 66 0 1 552 22 0 24 0 1 195 5 1 158 40 31 133 0 1 45 0 1 49 0 12 23 chain 19461 chr14 107349540 + 51978336 51978588 L1PA7 6471 + 6200 6454 128783 104 15 17 133 chain 15325 chr14 107349540 + 51981025 51981230 L1PA8 5853 + 5652 5853 140411 26 2 1 15 2 1 48 1 0 17 2 1 92 chain 26653 chr14 107349540 + 52016313 52016612 AluYf4 310 - 10 310 97478 93 1 2 205 chain 5631 chr14 107349540 + 52044525 52044588 L1PA7 6471 - 16 79 188755 63 chain 16228 chr14 107349540 + 52053789 52053989 L1PB4 2604 - 1033 1232 137676 133 1 0 66 chain 35454 chr14 107349540 + 52065319 52065906 L1PA16 3655 - 92 685 75614 73 62 78 83 0 2 36 2 0 61 16 17 9 1 0 113 23 11 76 0 1 19 0 1 13 chain 31119 chr14 107349540 + 52065917 52066370 L1PA16 3655 + 2451 2903 82307 164 27 27 29 18 17 215 chain 22140 chr14 107349540 + 52071858 52072099 SVA_D 2077 - 0 243 119619 117 0 2 124 chain 22825 chr14 107349540 + 52098667 52099032 THE1C 375 + 0 375 116471 91 44 48 31 0 12 11 11 5 177 chain 22837 chr14 107349540 + 52105898 52106164 AluY 311 + 27 294 116407 105 0 1 161 chain 28457 chr14 107349540 + 52117109 52117405 AluYa5 310 - 7 303 91346 296 chain 7241 chr14 107349540 + 52128987 52129098 L1PA13 3608 + 3335 3440 175826 27 1 0 29 10 5 44 chain 5213 chr14 107349540 + 52130718 52130779 MSTD 398 - 338 398 192889 36 1 0 24 chain 5918 chr14 107349540 + 52190857 52190927 U6 107 + 37 107 186006 70 chain 7274 chr14 107349540 + 52202730 52202819 MER58A 224 - 106 194 175629 69 1 0 19 chain 337900 chr14 107349540 + 52215304 52219274 HERVE-int 4064 + 0 4064 11958 287 7 0 526 4 1 721 0 1 565 5 4 407 3 1 228 0 113 175 7 4 372 2 0 72 1 0 123 2 1 463 chain 10572 chr14 107349540 + 52251297 52251433 HSMAR1 1287 + 9 149 157950 62 0 4 74 chain 21511 chr14 107349540 + 52255892 52256280 L1MA5A 2387 - 92 446 122101 65 27 0 11 46 45 18 2 0 49 1 0 45 1 0 29 1 0 11 1 0 81 chain 564233 chr14 107349540 + 52261319 52267350 L1HS 6032 - 0 6031 229 6031 chain 79105 chr14 107349540 + 52269294 52270260 L1PA6 6164 + 5216 6156 43998 415 27 12 12 1 0 5 12 0 196 0 1 153 0 1 145 chain 4178 chr14 107349540 + 52275226 52275275 MLT1H 522 + 120 169 204854 49 chain 8000 chr14 107349540 + 52278334 52278463 MER5A1 166 - 36 166 171068 84 19 20 26 chain 22792 chr14 107349540 + 52349482 52349752 AluSc8 310 + 37 309 116622 96 0 2 174 chain 23267 chr14 107349540 + 52372374 52372739 THE1C 375 + 0 375 114355 87 3 4 36 26 26 27 0 1 4 7 6 110 0 10 39 1 0 25 chain 10843 chr14 107349540 + 52404343 52404458 L1HS 6032 - 0 115 156812 115 chain 21374 chr14 107349540 + 52411875 52412390 L1MB3 1562 + 1056 1552 122606 36 0 1 23 73 79 6 1 0 77 12 14 50 12 11 66 47 23 26 1 0 37 33 32 15 chain 20721 chr14 107349540 + 52453505 52453777 L1PA16 3655 + 3270 3537 124889 18 2 0 144 3 0 105 chain 51004 chr14 107349540 + 52532179 52532776 L1HS 6032 - 0 555 58302 8 42 0 547 chain 21210 chr14 107349540 + 52580058 52580339 AluSp 311 + 10 294 123177 62 0 3 130 11 9 63 1 3 14 chain 120782 chr14 107349540 + 52588777 52590207 LTR12C 1709 + 0 1709 30764 192 1 0 239 1 0 60 0 1 81 6 5 85 0 278 171 1 0 112 0 4 481 chain 17673 chr14 107349540 + 52594463 52594681 MER57A1 433 + 0 222 133766 86 1 5 131 chain 44738 chr14 107349540 + 52600793 52601560 L1PA13 3608 + 2791 3548 63345 174 8 10 11 0 1 90 5 17 38 3 2 25 1 0 25 0 3 86 4 3 16 3 4 40 1 0 56 7 4 43 105 86 11 3 0 12 chain 257391 chr14 107349540 + 52602867 52607267 L1PA5 6144 + 0 6142 15857 473 7 6 23 0 1 328 0 907 202 1378 2207 197 0 4 956 0 1 505 0 1 331 chain 70950 chr14 107349540 + 52610994 52612437 L1PA15 4387 - 60 1530 47928 12 3 1 41 9 6 50 1 0 7 4 0 25 2 1 42 13 12 25 6 5 168 1 0 40 3 1 65 17 13 62 1 3 58 16 21 20 3 18 102 314 9 44 0 2 45 14 14 66 0 328 164 chain 124181 chr14 107349540 + 52612437 52614107 L1PA11 4918 - 589 2222 29637 12 0 4 78 0 13 430 0 1 150 0 11 102 63 0 88 15 8 5 0 3 156 1 0 79 0 1 320 8 9 163 chain 3866 chr14 107349540 + 52613209 52613252 L1PA11 4918 - 911 954 203016 43 chain 10061 chr14 107349540 + 52614107 52614260 L1PA11 4918 + 4357 4504 159332 38 2 1 11 2 0 67 2 0 13 2 1 16 chain 508464 chr14 107349540 + 52624492 52630552 L1PA6 6164 + 0 6162 6287 903 0 5 847 1 2 437 0 2 112 0 3 14 29 0 98 0 1 164 0 3 131 0 1 181 6 18 26 16 3 238 0 1 513 1 0 64 0 99 33 5 7 452 0 4 106 0 3 104 5 6 172 0 5 1266 0 4 126 2 0 8 chain 40520 chr14 107349540 + 52631316 52631816 MER9a3 513 + 0 508 68564 18 0 2 91 0 1 8 0 2 292 0 2 18 3 4 70 chain 383024 chr14 107349540 + 52632381 52638827 HERVK9-int 4720 + 145 4720 10663 17 1 0 317 0 1 570 1904 0 285 5 9 87 0 2 68 0 1 85 1 2 1686 0 2 388 0 2 969 15 32 18 5 9 25 chain 8609 chr14 107349540 + 52634204 52634614 LTR12C 1709 + 650 818 167676 19 38 38 95 242 0 16 chain 33200 chr14 107349540 + 52638839 52639295 MER9a3 513 + 37 513 78884 50 23 24 147 0 18 158 3 4 75 chain 52399 chr14 107349540 + 52646059 52646715 PABL_A 660 + 0 660 57355 124 1 0 315 0 1 68 0 4 70 12 12 66 chain 27244 chr14 107349540 + 52646760 52647108 THE1A 353 + 0 348 95451 82 5 6 22 1 0 238 chain 6284 chr14 107349540 + 52665174 52665246 L1PA3long 6157 + 6085 6157 182929 72 chain 15227 chr14 107349540 + 52666163 52666339 L1PA4 6152 - 0 176 140695 176 chain 76800 chr14 107349540 + 52666347 52667205 L1PA4 6152 + 5114 5972 45084 858 chain 22225 chr14 107349540 + 52671229 52671582 L1PREC2 3366 - 750 1102 119238 100 16 19 13 5 6 41 6 7 110 10 4 52 chain 532067 chr14 107349540 + 52674892 52681007 L1PA5 6144 + 3 6143 3954 72 14 14 501 0 22 33 8 6 77 0 1 59 0 1 2191 0 2 182 1 0 518 2 0 607 0 1 1243 0 3 607 chain 4581 chr14 107349540 + 52692638 52692696 LTR38B 592 + 62 120 199863 58 chain 142231 chr14 107349540 + 52692696 52694242 L1PA3long 6157 + 4611 6157 25772 1546 chain 16584 chr14 107349540 + 52695453 52695684 MER1B 344 - 0 229 136705 67 8 12 29 6 0 121 chain 4752 chr14 107349540 + 52703970 52704053 LTR31 607 + 0 81 197891 26 16 14 41 chain 3769 chr14 107349540 + 52706520 52706591 MER5A1 166 + 60 129 210827 15 17 15 39 chain 248960 chr14 107349540 + 52722154 52724850 L1PA2 6032 + 3327 6032 16315 491 0 1 1183 3 2 946 0 9 73 chain 68199 chr14 107349540 + 52728152 52728906 L1PA4 6152 + 5386 6140 49158 754 chain 53487 chr14 107349540 + 52744740 52745343 L1PA4 6152 + 5546 6150 56690 492 0 1 111 chain 7442 chr14 107349540 + 52769094 52769249 L1PB1 5432 - 34 175 174500 6 1 0 22 1 0 24 2 0 14 7 5 15 10 1 11 2 0 20 1 0 7 0 4 12 chain 5027 chr14 107349540 + 52785086 52785167 MER33 330 - 76 158 194854 31 7 8 43 chain 87192 chr14 107349540 + 52788812 52789906 MER11A 1151 - 0 1151 40692 71 0 4 141 0 2 73 43 0 24 1 0 541 5 1 136 1 100 58 chain 389264 chr14 107349540 + 52839095 52844789 L1PB1 5432 - 10 5410 10472 18 1 0 12 1 0 22 1 0 24 2 0 13 10 7 17 30 19 9 1 0 44 7 6 9 3 2 52 2 0 9 5 1 14 3 2 4 1 0 24 3 0 9 1 2 90 3 0 83 309 0 56 0 1 97 0 5 145 3 0 141 0 5 439 9 10 39 1 0 154 1 0 95 13 15 238 5 8 224 0 17 276 0 1 14 1 2 111 1 0 335 1 2 5 9 0 416 0 2 66 0 4 292 4 5 161 5 6 397 1 0 366 0 7 82 15 18 97 36 32 50 9 10 167 20 19 61 11 18 48 9 17 132 chain 198848 chr14 107349540 + 52848557 52850996 L1P3 4156 + 0 2429 19293 179 1 2 70 2 1 70 1 0 79 17 0 78 0 1 4 1 0 134 0 1 128 0 1 141 0 1 352 1 2 11 0 1 177 0 1 29 0 3 290 1 0 4 0 1 263 1 0 405 chain 526190 chr14 107349540 + 52851009 52857017 L1PA4 6152 + 6 6144 4572 186 17 126 1028 0 1 854 0 7 105 1 0 717 0 9 5 0 1 767 0 1 1630 0 3 542 1 3 11 6 3 33 14 15 91 chain 7469 chr14 107349540 + 52873419 52873502 L1PA2 6032 - 6 89 174349 83 chain 3828 chr14 107349540 + 52895473 52895852 LTR40a 516 + 7 407 209964 34 136 122 23 169 204 17 chain 14702 chr14 107349540 + 52926958 52927139 L1PREC2 3366 + 2536 2717 142267 181 chain 412721 chr14 107349540 + 52942614 52948052 L1PB1 5432 + 19 5419 9726 381 2 0 6 3 0 137 1 0 9 6 5 205 0 2 32 0 1 26 0 2 17 0 4 15 0 4 89 0 1 431 19 27 92 0 2 198 2 0 357 2 0 293 0 2 137 1 0 142 0 1 32 0 10 140 0 3 20 2 0 309 11 12 329 0 1 238 6 0 323 0 1 7 0 5 152 1 5 85 0 1 55 9 0 147 1 0 116 3 0 38 2 0 5 1 2 22 8 10 99 1 0 124 4 12 24 1 5 45 1 5 84 57 11 24 1 0 9 1 0 9 6 2 11 3 1 18 0 9 19 7 6 15 2 1 36 7 6 16 3 0 6 48 30 14 2 0 24 1 0 21 1 0 13 1 0 15 chain 24482 chr14 107349540 + 52962605 52962891 AluY 311 + 10 296 107639 286 chain 531639 chr14 107349540 + 52969306 52975775 L1PA4 6152 + 0 6143 4005 345 7 4 324 0 4 343 2 0 432 0 5 1298 0 1 20 0 4 145 0 1 210 8 0 18 1 3 26 1 0 332 1 0 415 339 0 714 0 1 238 1 0 1009 1 0 24 14 26 201 chain 29930 chr14 107349540 + 52973255 52973573 AluYb8 318 - 0 318 85022 318 chain 9030 chr14 107349540 + 52976270 52976371 L1PA4 6152 + 6051 6152 165436 101 chain 37057 chr14 107349540 + 52995771 52996195 L1PA4 6152 + 5717 6146 73446 253 0 5 171 chain 29576 chr14 107349540 + 53014892 53015311 LTR3B 427 - 4 427 86293 26 4 3 20 14 15 24 0 7 25 0 3 123 6 0 177 chain 521373 chr14 107349540 + 53034713 53041441 L1PA7 6471 + 0 6466 5019 51 11 0 383 12 14 127 16 25 20 20 21 380 1 0 4 0 1 15 3 0 133 0 10 79 1 0 116 15 14 240 0 2 175 1 0 48 59 5 60 0 1 60 2 3 164 1 0 489 0 1 63 0 4 48 0 4 338 0 3 289 264 0 159 0 4 834 0 1 25 2 0 8 0 2 246 0 24 157 0 1 300 1 3 5 2 0 461 1 4 67 0 1 229 0 1 288 1 2 13 8 12 222 4 0 7 chain 514169 chr14 107349540 + 53057557 53063675 L1PA6 6164 - 4 6164 5758 79 0 1 383 0 1 142 0 3 182 0 3 198 0 1 462 7 0 61 0 1 451 0 1 513 1 0 4 5 6 66 0 1 373 0 1 41 1 0 6 2 3 145 1 2 201 1 7 278 0 7 211 0 1 143 1 0 163 0 1 608 0 1 221 0 2 362 0 17 120 0 2 118 1 0 367 1 0 4 1 2 194 chain 23172 chr14 107349540 + 53079679 53079981 AluY 311 + 0 299 114800 26 3 0 106 11 12 105 1 0 50 chain 101406 chr14 107349540 + 53080369 53082540 L1MA2 4263 - 149 1691 36418 6 0 3 47 7 0 19 0 1 55 15 12 9 1 0 4 1 0 152 14 12 51 16 16 65 672 65 12 5 1 10 2 0 14 0 3 234 3 9 414 6 0 128 1 0 73 15 10 39 8 6 59 1 0 13 chain 23265 chr14 107349540 + 53094288 53094566 AluSc5 308 + 6 285 114359 71 0 1 207 chain 125022 chr14 107349540 + 53104700 53106051 L1PA3long 6157 - 13 1365 29386 888 0 1 463 chain 31821 chr14 107349540 + 53106051 53106393 L1PA3long 6157 + 4448 4790 80992 342 chain 10015 chr14 107349540 + 53109677 53109854 MER53 195 - 0 195 160510 48 0 7 26 35 46 68 chain 24046 chr14 107349540 + 53159940 53160269 MLT2A1 477 + 105 477 110075 64 4 1 9 0 1 18 0 6 181 3 0 10 7 49 33 chain 15398 chr14 107349540 + 53165860 53166124 L1MA7 2200 + 1358 1617 140205 41 1 0 87 54 51 18 1 0 62 chain 17439 chr14 107349540 + 53182934 53183190 L1MA7 2200 + 1523 1792 134405 6 0 3 21 1 0 33 0 3 96 0 2 20 5 14 32 7 4 35 chain 23475 chr14 107349540 + 53211830 53212143 AluSp 311 - 4 302 113242 211 0 3 36 27 9 39 chain 21879 chr14 107349540 + 53218929 53219198 AluSc 308 + 25 296 120715 45 0 2 224 chain 11010 chr14 107349540 + 53263824 53263981 THE1B 368 - 206 368 156175 48 8 9 52 0 6 34 2 0 13 chain 23433 chr14 107349540 + 53264333 53264698 THE1D 372 - 1 372 113464 31 1 0 34 1 0 13 0 2 38 19 20 28 22 27 178 chain 4027 chr14 107349540 + 53277204 53277255 MER21C 908 - 348 399 206973 51 chain 33169 chr14 107349540 + 53289798 53290292 LTR7B 505 - 0 505 78951 51 14 13 54 0 1 21 1 0 85 29 0 28 3 27 28 6 13 66 1 11 107 chain 26230 chr14 107349540 + 53299350 53299652 AluY 311 + 1 305 99089 71 0 3 43 1 0 187 chain 25921 chr14 107349540 + 53303317 53303623 AluY 311 + 0 310 100331 37 0 2 16 0 1 70 0 1 183 chain 28482 chr14 107349540 + 53305174 53305509 L1PA5 6144 + 5812 6142 91254 89 1 0 234 4 0 7 chain 5105 chr14 107349540 + 53305510 53305567 L1MB3 1562 - 212 269 194032 57 chain 22983 chr14 107349540 + 53376505 53376774 AluSc 308 + 15 284 115700 269 chain 24939 chr14 107349540 + 53400153 53400455 AluSp 311 + 9 309 105114 43 9 7 250 chain 23118 chr14 107349540 + 53413919 53414210 AluY 311 + 4 293 115047 125 1 2 144 1 0 12 2 0 6 chain 5579 chr14 107349540 + 53423061 53423130 MLT1A0 366 + 4 73 189293 69 chain 91330 chr14 107349540 + 53433068 53434661 L1MA2 4263 - 165 1439 39184 29 22 11 93 31 27 132 7 4 27 4 5 108 1 0 76 0 1 3 5 0 7 0 1 286 311 0 65 0 5 16 15 19 68 8 9 194 0 3 85 chain 11187 chr14 107349540 + 53448427 53448694 L1MC1 2226 - 46 274 155483 26 1 0 17 1 0 5 15 6 4 1 0 17 9 7 15 5 0 21 32 15 54 2 0 10 3 2 29 chain 26450 chr14 107349540 + 53453387 53453816 MSTA 426 + 0 426 98237 133 0 1 29 11 7 36 64 63 142 0 1 14 chain 23679 chr14 107349540 + 53475150 53475496 THE1D 372 + 0 357 112160 61 20 20 85 16 28 142 2 1 20 chain 17511 chr14 107349540 + 53500301 53500494 L1PA3long 6157 + 5963 6157 134237 189 0 1 4 chain 510606 chr14 107349540 + 53551373 53557597 L1PA6 6164 + 0 6162 6110 283 32 35 45 27 0 8 0 27 102 13 12 280 17 0 15 0 17 725 1 0 371 0 1 257 1 0 35 0 7 105 13 0 190 1 0 827 3 0 93 3 0 267 1 0 663 0 6 111 0 1 476 21 0 20 14 0 138 23 0 879 7 9 157 chain 64577 chr14 107349540 + 53574467 53575218 LTR17 781 + 0 772 50765 327 1 0 374 0 22 49 chain 199760 chr14 107349540 + 53586105 53588643 L1PA8 5853 + 3276 5847 19225 114 1 2 446 0 1 71 0 4 276 4 5 208 0 1 293 2 1 125 0 2 29 0 5 128 0 4 17 0 4 70 0 2 3 1 0 61 0 1 394 0 6 15 1 0 41 2 0 74 12 20 4 0 1 36 2 1 19 1 0 82 1 0 5 chain 26530 chr14 107349540 + 53595462 53595870 LTR7B 505 + 0 485 97930 95 0 31 82 9 7 17 4 27 63 7 32 87 14 13 20 0 1 10 chain 32226 chr14 107349540 + 53601840 53603036 LTR7B 505 + 0 497 80476 93 0 31 84 34 0 21 720 23 27 0 3 83 1 0 23 0 1 52 14 13 18 1 0 25 chain 11013 chr14 107349540 + 53602078 53602270 LTR7B 505 + 290 505 156149 37 1 26 88 14 13 18 9 8 25 chain 13962 chr14 107349540 + 53602615 53602786 LTR7B 505 + 0 184 144699 94 0 3 8 0 10 69 chain 50285 chr14 107349540 + 53610062 53610651 LTR10C 591 - 0 591 58799 81 0 2 508 chain 12873 chr14 107349540 + 53622451 53622629 MER30 238 - 11 206 148737 28 3 0 68 5 25 74 chain 39856 chr14 107349540 + 53642472 53642946 LTR10F 562 - 0 562 69525 231 0 1 68 0 87 175 chain 204296 chr14 107349540 + 53643241 53646031 HERVIP10FH-int 2884 - 60 2735 18905 35 10 4 17 1 0 11 2 1 51 6 8 58 1 0 153 0 1 211 1 0 20 5 4 196 7 6 244 41 29 11 1 0 3 10 0 42 19 7 43 20 3 13 7 1 13 43 26 18 14 0 126 5 0 63 1 0 9 1 0 9 1 0 8 4 1 175 2 0 68 5 6 503 1 0 95 0 1 321 4 8 6 9 0 47 chain 46923 chr14 107349540 + 53648101 53648743 LTR10F 562 - 0 562 61289 284 1 0 16 28 0 30 25 0 119 26 0 113 chain 1926 chr14 107349540 + 53648460 53648485 LTR10F 562 - 302 327 150332 25 chain 50373 chr14 107349540 + 53650674 53651258 LTR10C 591 - 0 589 58732 168 0 1 176 0 4 240 chain 125603 chr14 107349540 + 53666350 53667924 THE1A-int 1579 + 9 1579 29211 143 17 4 873 0 9 242 4 5 227 3 2 65 chain 22555 chr14 107349540 + 53668860 53669187 MER4D1 891 - 77 453 117788 81 34 83 212 chain 253564 chr14 107349540 + 53669471 53673485 L1PBa 3878 + 101 3750 16054 44 1 0 12 10 6 50 1 0 10 14 11 15 0 1 152 0 1 45 77 76 192 56 63 142 0 7 7 7 0 38 11 8 129 17 17 176 1 0 143 0 2 160 15 13 172 0 3 7 12 0 50 0 1 229 0 20 368 376 0 166 0 6 9 3 0 3 3 0 56 2 0 195 3 4 38 0 1 106 4 6 85 0 4 36 5 6 14 15 12 47 1 0 126 0 1 253 0 3 60 10 9 20 2 0 13 chain 59086 chr14 107349540 + 53676632 53677284 L1PA3long 6157 - 0 652 53342 652 chain 12327 chr14 107349540 + 53683657 53683906 LTR12C 1709 - 733 1059 150905 22 73 73 44 1 0 23 0 78 86 chain 4321 chr14 107349540 + 53683993 53684042 LTR12C 1709 - 542 591 202965 49 chain 16273 chr14 107349540 + 53709018 53709349 THE1A 353 + 0 341 137542 44 0 17 44 29 28 30 41 45 6 4 0 10 22 15 47 0 1 54 chain 39483 chr14 107349540 + 53709376 53711440 THE1A-int 1579 + 17 1457 70045 388 0 1 8 1552 927 116 chain 10436 chr14 107349540 + 53711440 53711555 THE1A-int 1579 + 1464 1579 158546 115 chain 33539 chr14 107349540 + 53711910 53712411 PRIMA4_LTR 623 + 0 611 78331 52 0 1 36 3 4 40 1 2 42 1 24 58 4 5 110 12 92 33 0 1 45 11 13 53 chain 40284 chr14 107349540 + 53720399 53721083 L1PA14 3548 - 83 737 68897 10 6 0 40 2 1 9 8 7 5 1 0 15 4 2 33 24 21 101 1 0 84 1 0 6 2 0 14 11 7 105 2 0 5 2 0 47 2 0 14 22 19 20 0 1 88 chain 194367 chr14 107349540 + 53721527 53724436 MER4-int 2692 - 0 2616 19645 408 0 12 77 1 2 69 8 9 18 6 5 140 0 1 58 1 3 110 1 0 269 12 7 21 5 10 144 2 0 17 1 0 116 0 3 297 306 0 99 0 13 57 3 2 160 2 0 98 6 8 131 26 13 106 3 4 77 1 2 8 3 0 8 0 2 9 2 0 23 chain 27559 chr14 107349540 + 53727102 53727500 LTR3A 482 + 27 420 94475 82 0 1 118 45 33 10 1 5 72 0 1 31 0 1 39 chain 34116 chr14 107349540 + 53728337 53728779 MER4A1 472 - 6 472 77458 4 0 1 208 1 22 215 0 2 14 chain 474599 chr14 107349540 + 53733124 53738297 L1PA2 6032 - 1 5174 7891 780 0 1 78 2 0 898 0 1 3415 chain 5809 chr14 107349540 + 53740612 53740730 LTR18B 584 - 404 529 187053 45 35 42 38 chain 462323 chr14 107349540 + 53765117 53770209 L1PA3long 6157 - 0 5104 8310 15 3 0 97 0 1 743 0 1 279 0 13 285 1 0 89 0 1 3580 chain 121716 chr14 107349540 + 53775916 53781625 L1PB2 3958 - 120 3892 30474 27 8 24 12 1 0 33 2 1 62 1 0 62 1 0 60 3445 1823 67 4 5 72 6 1 30 5 6 177 3 18 102 1 0 90 0 1 207 317 0 176 2 1 155 1 2 68 0 1 45 10 13 10 9 10 15 1 2 230 2 0 3 1 0 22 43 30 35 2 0 32 9 4 20 10 5 13 chain 20119 chr14 107349540 + 53776209 53776452 THE1B-int 1605 + 1362 1605 126773 243 chain 70429 chr14 107349540 + 53776754 53777844 L1PB 1623 + 549 1595 48198 41 1 0 129 0 8 128 0 3 438 15 13 106 1 4 27 1 0 6 3 2 30 1 0 4 3 0 9 9 5 13 1 0 9 66 29 22 2 0 11 5 0 9 chain 53776 chr14 107349540 + 53778602 53779267 THE1B-int 1605 - 913 1605 56485 225 0 2 8 0 25 432 chain 26359 chr14 107349540 + 53779267 53779630 THE1B 368 - 0 368 98577 171 5 3 15 13 5 115 0 15 44 chain 535868 chr14 107349540 + 53784758 53790926 L1PA4 6152 + 0 6152 3465 2133 3 0 371 36 18 662 0 1 18 1 0 486 2 0 655 0 4 1219 0 1 119 4 0 160 2 0 191 0 1 100 0 7 6 chain 24631 chr14 107349540 + 53826366 53826729 THE1B 368 - 0 368 106824 128 0 8 11 4 8 11 10 0 7 17 18 61 0 2 114 chain 58892 chr14 107349540 + 53828360 53829083 HERV17-int 4347 + 1637 4347 53465 326 10 1997 387 chain 27601 chr14 107349540 + 53829398 53829723 LTR17 781 + 0 326 94343 119 0 11 169 10 0 27 chain 28240 chr14 107349540 + 53829917 53830282 THE1A 353 - 0 353 92155 243 1 0 25 0 1 48 13 1 35 chain 127189 chr14 107349540 + 53830287 53831848 THE1A-int 1579 - 5 1577 28768 18 0 8 138 1 0 4 0 1 145 1 0 584 5 6 554 0 3 111 chain 20408 chr14 107349540 + 53831852 53832120 THE1A 353 - 2 273 125866 54 0 2 185 5 4 9 0 2 15 chain 5871 chr14 107349540 + 53832134 53832198 THE1A 353 - 289 353 186469 64 chain 18578 chr14 107349540 + 53846267 53846494 L1PA6 6164 - 15 243 131290 157 0 1 70 chain 90061 chr14 107349540 + 53860942 53862819 MER11A 1151 - 0 1151 39629 8 0 1 272 2 8 56 2 1 149 748 0 328 0 2 24 1 0 9 0 2 9 0 19 32 0 4 28 2 0 21 8 0 178 chain 519233 chr14 107349540 + 53890521 53896628 L1PA6 6164 + 0 6162 5237 226 3 1 9 0 2 262 0 1 17 0 2 49 1 0 31 0 35 619 1 2 304 1 2 288 0 1 51 0 1 422 0 1 32 4 3 819 1 5 54 1 0 77 0 1 259 0 2 423 0 1 843 0 2 419 0 1 45 0 4 846 chain 6382 chr14 107349540 + 53921840 53921981 L1PB3 3668 + 3482 3612 182168 18 5 4 27 2 0 33 9 5 13 2 1 12 6 3 14 chain 59150 chr14 107349540 + 53948730 53949471 MER4E1 777 - 8 777 53305 219 1 7 109 0 1 77 4 23 67 0 1 247 0 1 17 chain 28233 chr14 107349540 + 53989292 53989654 L1PA8 5853 + 5496 5853 92179 68 1 0 115 1 0 9 1 0 52 2 1 19 1 0 93 chain 31764 chr14 107349540 + 54023413 54023829 MLT2A1 477 + 0 469 81227 142 3 9 17 1 5 210 0 2 8 2 44 21 1 0 11 chain 403646 chr14 107349540 + 54023841 54028855 HERVL-int 5654 + 0 5271 9981 251 0 289 155 0 1 4 1 0 423 0 1 344 10 8 8 0 14 347 1 2 388 5 6 98 79 0 473 0 1 67 1 0 81 0 3 14 0 7 484 19 20 263 10 11 602 4 8 24 5 8 82 7 15 57 0 1 251 0 1 87 1 4 368 chain 43256 chr14 107349540 + 54083026 54083580 MLT2A2 560 - 0 560 65112 73 0 1 73 0 11 222 1 0 167 5 0 13 chain 4734 chr14 107349540 + 54094597 54094662 HSMAR2 1300 + 1234 1300 198122 37 1 2 27 chain 4705 chr14 107349540 + 54117614 54117736 MSTC 436 - 116 246 198458 21 20 37 14 11 10 39 8 0 9 chain 125193 chr14 107349540 + 54146792 54148192 L1PA5 6144 - 5 1405 29324 1400 chain 19072 chr14 107349540 + 54163674 54163972 THE1C 375 - 47 367 129899 13 18 17 7 1 0 4 0 1 10 8 17 52 1 18 64 3 0 117 chain 9451 chr14 107349540 + 54168975 54169094 L1PA7 6471 - 2 121 163307 119 chain 52637 chr14 107349540 + 54179491 54180384 L1PB1 5432 - 5 871 57218 5 3 0 18 1 0 13 1 0 21 1 0 22 2 0 17 1 0 4 2 0 12 38 34 45 6 5 10 2 1 50 20 14 9 1 0 13 1 0 20 3 0 5 7 6 57 8 9 230 3 4 90 1 0 75 24 9 8 0 16 44 chain 40569 chr14 107349540 + 54219799 54220653 L1M1 2793 + 673 1512 68480 29 98 110 19 2 0 8 1 0 54 12 9 100 29 28 96 14 15 36 8 7 54 13 0 9 50 40 124 17 21 68 1 0 12 chain 46132 chr14 107349540 + 54221004 54221619 THE1B-int 1605 + 1 693 61914 12 4 5 134 0 8 113 0 6 48 1 0 11 8 5 4 0 1 13 0 1 35 0 64 232 chain 7883 chr14 107349540 + 54237705 54237801 MER85 139 - 43 139 171784 96 chain 14819 chr14 107349540 + 54240781 54240990 MER30 238 + 0 237 141887 17 1 8 82 5 25 28 0 1 76 chain 535303 chr14 107349540 + 54264628 54271045 L1PA7 6471 + 1 6465 3549 178 2 1 40 0 1 191 11 6 476 5 49 552 0 3 659 0 1 346 1 0 128 4 0 59 0 2 1667 1 2 115 6 10 858 0 1 69 0 2 205 5 6 256 0 1 574 3 0 6 chain 4381 chr14 107349540 + 54278184 54278308 L1MD1 2063 + 1705 1821 202180 17 3 0 16 6 5 14 34 30 34 chain 91758 chr14 107349540 + 54282495 54283592 L1PA7 6471 - 473 1574 39047 296 1 3 67 8 11 666 1 0 58 chain 25853 chr14 107349540 + 54283592 54283892 L1PA7 6471 + 6008 6308 100637 300 chain 12187 chr14 107349540 + 54283905 54284055 L1PA7 6471 + 6320 6470 151466 150 chain 180972 chr14 107349540 + 54296427 54299027 L1PBa 3878 + 175 2636 20902 38 190 38 272 2 1 68 0 10 168 1 4 13 0 1 7 1 0 17 38 38 130 4 7 199 0 3 252 0 2 171 1 0 6 6 0 350 0 2 203 3 1 460 chain 12590 chr14 107349540 + 54299045 54299377 L1PB1 5432 + 5108 5422 149878 5 3 0 31 1 0 14 5 1 9 2 0 49 21 19 45 4 3 12 3 0 15 9 0 15 72 79 17 chain 24488 chr14 107349540 + 54304099 54304407 AluY 311 + 0 307 107609 25 3 0 106 7 8 99 0 1 68 chain 46996 chr14 107349540 + 54304591 54305155 L1PA6 6164 + 5584 6152 61213 242 0 1 183 0 1 55 11 13 73 chain 4587 chr14 107349540 + 54323578 54323650 Ricksha_c 1012 - 850 918 199785 13 9 5 50 chain 27891 chr14 107349540 + 54334940 54335464 L1PA14 3548 + 2897 3379 93395 7 0 1 24 12 10 14 2 0 47 2 0 5 2 0 8 28 0 29 1 6 57 17 13 13 2 0 6 1 0 28 3 5 51 3 1 110 16 11 36 chain 16161 chr14 107349540 + 54343666 54343849 L1PA7 6471 + 4772 4955 137867 183 chain 130904 chr14 107349540 + 54343858 54345366 L1PA7 6471 + 4963 6469 27882 651 9 7 848 chain 45486 chr14 107349540 + 54354442 54354972 L1PA5 6144 + 5618 6143 62511 192 0 1 324 6 0 8 chain 112257 chr14 107349540 + 54375811 54377054 L1P1 4361 - 784 2027 33598 1243 chain 86340 chr14 107349540 + 54377054 54377981 L1PA2 6032 + 5098 6025 40876 927 chain 116766 chr14 107349540 + 54451859 54453407 THE1B-int 1605 + 0 1599 32203 15 0 2 16 0 1 4 1 0 5 28 42 269 8 9 69 11 36 999 10 19 113 chain 167015 chr14 107349540 + 54470982 54472820 L1PA3long 6157 - 0 1851 22392 524 0 5 314 0 4 164 0 1 682 0 3 154 chain 6712 chr14 107349540 + 54482360 54482439 L1PREC2 3366 + 2543 2622 179603 79 chain 66271 chr14 107349540 + 54485649 54486606 L1PB2 3958 + 2912 3838 49969 11 1 0 63 1 2 230 7 6 32 10 3 50 2 0 51 2 1 13 10 0 22 0 1 21 1 2 15 5 3 13 4 0 94 1 0 72 1 0 64 1 0 68 2 0 25 4 3 61 chain 483588 chr14 107349540 + 54494417 54500000 L1PA5 6144 - 12 5583 7604 160 2 1 1096 6 0 93 0 2 122 1 2 704 1 3 72 0 3 103 0 1 1035 10 19 563 0 1 589 4 3 352 14 0 38 9 0 609 chain 29164 chr14 107349540 + 54521882 54522189 AluYb8 318 + 0 307 88231 307 chain 34357 chr14 107349540 + 54522331 54522732 L1P1 4361 + 3056 3460 77120 121 1 0 67 0 4 212 chain 264948 chr14 107349540 + 54535169 54541959 L1MA1 4479 - 289 4243 15444 18 8 1 12 4 2 6 1 0 9 4 3 32 2 0 19 21 19 103 23 19 36 21 19 33 1 0 13 11 9 11 1 0 61 13 12 14 2 0 25 6 5 132 0 1 57 1 0 9 0 1 120 3 0 80 6 1 43 1 0 14 1 0 73 4 0 20 2 0 173 2 0 27 1 0 17 0 1 58 11 10 68 1 0 33 14 16 82 5 7 63 4 3 138 7 33 261 0 1 21 18 21 20 14 9 5 0 2 96 2 1 243 0 2 68 1 2 235 0 12 123 0 4 22 1 0 205 0 1 37 1 0 103 0 1 135 11 15 32 2868 22 29 0 4 7 0 1 4 1 0 229 0 5 98 1 0 74 13 11 32 chain 227324 chr14 107349540 + 54538641 54541148 L1PA4 6152 - 16 2530 17467 1640 0 1 137 0 4 314 0 1 355 1 2 60 chain 3420 chr14 107349540 + 54566845 54567007 MER5C 305 + 141 300 216762 14 47 46 17 44 45 6 3 0 31 chain 39944 chr14 107349540 + 54578731 54579385 L1MA5A 2387 + 1660 2295 69401 39 14 13 31 0 3 90 30 18 106 0 1 69 8 7 32 1 0 39 1 0 18 1 0 4 9 25 60 3 0 15 19 0 65 chain 50411 chr14 107349540 + 54589743 54590286 L1PA3long 6157 - 0 543 58705 543 chain 37372 chr14 107349540 + 54618907 54620075 L1PB1 5432 + 4630 5424 72999 175 1 2 75 0 1 47 527 184 20 1 0 10 1 0 16 4 0 8 3 1 51 2 1 15 1 0 45 1 0 15 67 50 22 3 2 22 1 0 12 1 0 10 2 0 10 chain 17475 chr14 107349540 + 54620678 54621059 THE1D 372 - 0 372 134316 32 1 0 63 2 3 50 109 112 45 27 15 52 chain 29236 chr14 107349540 + 54657558 54657867 AluYa5 310 - 1 310 87876 309 chain 85808 chr14 107349540 + 54664646 54665704 MER11B 1079 + 0 1064 41227 388 0 1 137 0 1 243 1 3 103 0 1 156 1 2 29 chain 151099 chr14 107349540 + 54669313 54671612 SVA_D 2077 + 11 2064 24462 570 0 233 104 0 87 31 0 2 143 549 0 203 1 0 4 52 24 317 0 10 325 chain 35258 chr14 107349540 + 54670235 54670638 SVA_F 1814 + 873 1291 75853 7 0 1 65 1 16 44 1 0 83 0 1 184 1 0 17 chain 4133 chr14 107349540 + 54670657 54670710 SVA_D 2077 + 912 954 75044 35 11 0 7 chain 4055 chr14 107349540 + 54670918 54670970 SVA_D 2077 + 1135 1187 75044 52 chain 33491 chr14 107349540 + 54682455 54682910 MER75 514 - 11 499 78424 27 0 9 108 0 4 9 12 29 55 1 0 173 0 4 70 chain 559888 chr14 107349540 + 54700601 54706741 L1PA3long 6157 + 4 6157 364 1057 0 7 378 0 1 2017 0 1 1845 0 4 843 chain 27666 chr14 107349540 + 54709283 54709621 MSTB-int 1649 - 1309 1648 94165 319 0 1 19 chain 28645 chr14 107349540 + 54712490 54712920 MSTC 436 - 0 429 90533 193 20 10 60 16 0 9 2 26 55 1 2 74 chain 37176 chr14 107349540 + 54727974 54728463 LTR10D 510 - 0 510 73273 169 0 1 77 0 1 26 5 11 118 10 15 5 0 3 14 0 5 65 chain 35583 chr14 107349540 + 54740472 54740902 L1PA5 6144 - 2 436 75430 53 0 4 79 0 7 9 7 0 282 chain 4413 chr14 107349540 + 54790335 54790388 L1P5 443 + 385 437 201755 6 1 0 46 chain 13235 chr14 107349540 + 54790740 54790991 L1PB1 5432 + 5099 5327 147338 15 1 0 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 15 1 0 4 18 8 19 chain 3716 chr14 107349540 + 54809954 54809996 MER53 195 - 129 171 211692 42 chain 16701 chr14 107349540 + 54818949 54819146 L1PA3long 6157 + 5951 6149 136404 133 0 1 64 chain 192706 chr14 107349540 + 54845749 54848116 L1PA7 6471 + 4077 6468 19796 200 0 2 73 5 7 51 2 0 443 2 1 469 0 1 219 1 0 56 0 4 11 0 3 76 16 19 49 0 5 367 6 14 12 0 1 39 0 4 259 5 0 6 chain 4335 chr14 107349540 + 54859398 54859535 LTR12C 1709 - 642 701 202777 45 78 0 14 chain 107522 chr14 107349540 + 54860003 54861348 LTR12C 1709 + 7 1701 34840 181 0 7 78 12 26 124 0 1 370 10 326 104 0 4 171 8 0 115 1 3 42 0 3 24 0 10 105 chain 17985 chr14 107349540 + 54863142 54863363 AluSp 311 + 76 298 132902 56 1 0 55 0 1 84 0 1 25 chain 10223 chr14 107349540 + 54868376 54868643 L1PB1 5432 - 19 262 159498 9 1 0 11 2 1 16 11 10 22 26 21 12 5 4 9 12 0 16 1 0 30 16 15 16 2 1 50 chain 369057 chr14 107349540 + 54869244 54874695 L1P2 5180 - 2 5177 11122 4 1 0 38 1 0 49 1 0 816 0 10 11 7 8 325 6 9 200 14 15 254 15 0 54 0 1 169 1 0 71 316 0 154 0 16 62 1 9 16 0 4 453 0 1 220 0 2 477 9 8 246 0 1 236 0 1 4 1 0 185 1 0 4 0 1 60 26 25 157 0 15 46 33 12 164 53 0 3 22 0 34 0 3 6 3 0 4 1 0 8 39 27 33 19 0 90 137 267 33 15 11 43 chain 22762 chr14 107349540 + 54874706 54874989 L1PB1 5432 - 329 613 116771 158 0 1 125 chain 22340 chr14 107349540 + 54897851 54898143 AluSg7 307 - 14 307 118745 151 10 11 131 chain 127947 chr14 107349540 + 54909586 54911161 LTR12C 1709 + 0 1702 28579 719 0 118 275 1 0 4 5 3 105 0 4 283 0 4 45 0 1 7 1 0 110 0 4 20 chain 4819 chr14 107349540 + 54940388 54940446 LTR8 732 + 674 732 197127 58 chain 12006 chr14 107349540 + 54960143 54960288 AluSc5 308 - 10 155 152173 145 chain 10210 chr14 107349540 + 54965596 54965758 LTR35A 463 - 21 172 159568 99 6 0 16 9 6 8 2 0 22 chain 9971 chr14 107349540 + 54970291 54970469 MER20 218 - 0 179 160719 31 0 7 9 30 20 60 7 11 41 chain 25802 chr14 107349540 + 54984981 54985291 AluSp 311 + 0 305 100859 128 5 0 177 chain 17809 chr14 107349540 + 54985339 54985588 L1PA11 4918 - 419 664 133381 11 1 0 14 2 0 67 3 1 12 2 1 8 0 3 57 1 0 71 chain 11120 chr14 107349540 + 54994061 54994184 L1PA4 6152 + 6023 6146 155732 123 chain 223737 chr14 107349540 + 55052183 55055245 L1PB1 5432 - 10 3097 17668 18 1 0 12 1 0 22 1 0 24 2 0 13 15 12 13 12 4 8 2 0 16 2 1 42 1 0 16 2 1 52 2 0 9 7 3 12 7 6 4 1 0 19 5 0 7 0 5 140 8 9 126 13 18 143 0 7 42 3 0 283 0 2 212 0 1 92 3 0 59 6 7 235 1 3 235 4 5 106 0 1 35 0 39 302 0 1 5 1 0 43 0 1 62 0 3 44 2 0 21 2 1 144 1 4 16 2 1 68 0 5 88 8 0 159 chain 16748 chr14 107349540 + 55069338 55069525 L1PA5 6144 + 5957 6144 136263 187 chain 3275 chr14 107349540 + 55097484 55097522 MLT2B4 540 - 0 38 219463 38 chain 3462 chr14 107349540 + 55181382 55181426 MIRb 242 + 152 197 215947 26 0 1 18 chain 87235 chr14 107349540 + 55219322 55220340 LTR5A 1029 - 0 1029 40674 171 0 2 75 0 10 624 2 1 146 chain 8056 chr14 107349540 + 55268748 55268908 L1PB1 5432 + 5282 5422 170717 14 2 0 6 1 0 9 9 0 12 11 8 17 2 0 22 1 0 21 1 0 13 1 0 18 chain 14977 chr14 107349540 + 55274222 55274468 LTR18B 584 - 28 284 141391 87 1 0 27 8 22 14 9 12 68 17 11 15 chain 32745 chr14 107349540 + 55314019 55314443 MLT2A1 477 + 20 477 79624 149 1 5 150 1 0 61 3 33 59 chain 36567 chr14 107349540 + 55317204 55317669 L1PA5 6144 - 1 471 74147 8 5 0 136 4 11 24 8 11 141 0 1 4 1 0 134 chain 88980 chr14 107349540 + 55317669 55318671 L1PA5 6144 + 4700 5714 40012 184 2 14 816 chain 536573 chr14 107349540 + 55337082 55343221 L1PA4 6152 + 0 6152 3369 162 2 4 1066 4 5 1181 5 0 305 0 9 784 0 1 210 0 1 62 0 1 567 0 2 196 0 19 344 0 1 4 1 0 406 23 0 567 1 6 249 chain 5934 chr14 107349540 + 55357742 55357815 MER44C 733 + 37 110 185844 73 chain 22629 chr14 107349540 + 55363722 55363990 AluSc 308 - 5 295 117428 200 0 22 68 chain 4104 chr14 107349540 + 55365774 55365834 Tigger3b 1229 - 1139 1200 205892 28 2 3 30 chain 9695 chr14 107349540 + 55384323 55384553 MER33 330 + 17 247 162108 14 73 74 17 4 0 24 1 3 25 0 1 72 chain 6150 chr14 107349540 + 55395803 55395892 MER11A 1151 + 1063 1151 183985 22 8 7 59 chain 527208 chr14 107349540 + 55414793 55420829 L1PA5 6144 + 3 6130 4477 417 2 53 96 0 1 114 7 1 180 0 4 153 1 0 691 0 9 689 5 0 166 0 2 926 2 0 270 0 10 157 1 0 793 0 18 463 0 1 82 0 3 736 6 14 74 1 0 4 chain 4348 chr14 107349540 + 55430006 55430064 MER104 178 + 13 77 202623 49 0 6 9 chain 41654 chr14 107349540 + 55437377 55438012 L1P4 1494 + 703 1348 67086 129 9 10 59 27 31 148 9 12 137 5 6 4 1 0 97 0 2 10 chain 9511 chr14 107349540 + 55438182 55438321 L1P4 1494 + 523 663 163014 21 13 10 13 0 1 35 0 3 57 chain 5399 chr14 107349540 + 55461514 55461579 MER33 330 - 253 318 190990 65 chain 74272 chr14 107349540 + 55491267 55492221 LTR5_Hs 974 + 0 974 46374 289 0 1 114 0 14 49 0 1 188 1 0 163 8 15 19 20 18 103 chain 23791 chr14 107349540 + 55517170 55517459 AluSc 308 + 0 294 111520 41 0 5 69 0 5 114 5 0 60 chain 9682 chr14 107349540 + 55520623 55520788 Tigger4a 237 - 0 200 162187 64 8 28 15 0 15 37 4 7 5 3 0 29 chain 7401 chr14 107349540 + 55525635 55525766 MER2 342 + 180 317 174764 28 8 13 66 10 11 19 chain 23862 chr14 107349540 + 55545309 55545583 AluSc 308 - 34 308 111118 274 chain 22228 chr14 107349540 + 55549427 55549699 MER47A 366 - 35 307 119216 272 chain 46205 chr14 107349540 + 55553474 55554044 LTR12_ 688 - 0 688 61844 203 0 93 24 1 0 61 1 0 144 0 27 136 chain 6548 chr14 107349540 + 55556221 55556301 MLT2C2 476 - 395 475 180865 80 chain 5199 chr14 107349540 + 55561994 55562055 Tigger3b 1229 - 1126 1187 193036 61 chain 22651 chr14 107349540 + 55568138 55568412 AluSc8 310 + 28 305 117316 104 0 3 170 chain 6976 chr14 107349540 + 55578269 55578375 LTR32 486 + 12 125 177630 72 14 21 20 chain 13270 chr14 107349540 + 55582505 55582665 L1PA5 6144 + 5984 6144 147210 160 chain 23677 chr14 107349540 + 55597280 55597591 AluSp 311 - 15 311 112168 176 31 16 104 chain 23636 chr14 107349540 + 55610144 55610430 AluSc 308 - 15 298 112379 265 3 0 18 chain 78224 chr14 107349540 + 55640337 55641379 MER11C 1089 + 0 1069 44402 222 4 0 24 0 9 62 0 4 47 0 3 12 1 0 152 31 32 123 1 5 4 1 0 38 0 1 17 1 0 25 1 9 76 0 1 54 1 0 71 0 3 70 0 1 4 chain 24388 chr14 107349540 + 55652720 55653015 AluSp 311 + 14 308 108148 163 1 0 131 chain 6689 chr14 107349540 + 55668513 55668639 LTR36 617 + 456 585 179764 35 6 7 38 1 0 15 13 16 18 chain 38120 chr14 107349540 + 55743206 55743714 LTR6B 557 - 0 557 71954 22 0 1 33 0 1 4 0 1 83 9 11 252 1 0 21 0 2 39 0 15 15 8 36 21 chain 6873 chr14 107349540 + 55747544 55747628 MER2 342 + 257 341 178408 84 chain 4973 chr14 107349540 + 55747647 55747776 MER33 330 - 43 180 195436 22 1 0 36 17 23 17 19 22 17 chain 7360 chr14 107349540 + 55752180 55752291 7SLRNA 320 + 203 312 175036 87 10 8 14 chain 17435 chr14 107349540 + 55780281 55780613 THE1D 372 - 46 372 134425 53 6 7 32 0 3 21 35 37 39 1 0 39 14 15 6 3 0 18 9 0 56 chain 24606 chr14 107349540 + 55788759 55789046 AluYc 301 + 1 290 106960 110 3 5 174 chain 19211 chr14 107349540 + 55811277 55811564 L1PA8 5853 - 0 278 129496 92 2 1 19 2 1 40 32 22 53 0 5 11 2 0 34 chain 13964 chr14 107349540 + 55827092 55827433 Tigger1 2417 - 580 811 144695 6 0 1 7 1 0 87 1 7 13 6 5 26 3 5 43 42 0 4 75 0 27 chain 17090 chr14 107349540 + 55856351 55856560 MER75B 242 - 26 241 135352 63 0 4 118 0 2 28 chain 3375 chr14 107349540 + 55865975 55866024 MER3 215 - 46 100 217571 26 1 6 22 chain 3780 chr14 107349540 + 55866713 55866759 MADE1 96 - 50 96 210660 46 chain 12792 chr14 107349540 + 55909500 55909801 MLT1B 390 + 0 377 149088 44 126 203 99 1 0 31 chain 35401 chr14 107349540 + 55916879 55917310 MER57A1 433 - 0 433 75675 88 0 2 343 chain 116576 chr14 107349540 + 55922437 55923750 SVA_D 2077 - 13 1786 32265 325 0 10 323 0 50 9 0 2 30 12 13 20 0 396 195 0 1 399 chain 9881 chr14 107349540 + 55940761 55940874 L1PA7 6471 + 6348 6461 161168 113 chain 11059 chr14 107349540 + 55951819 55951956 MER6A 605 + 323 459 155966 114 1 0 22 chain 267960 chr14 107349540 + 55959233 55963446 L1PA6 6164 - 2 3149 15295 8 3 0 600 2 0 230 0 7 342 2 1 409 0 1 46 1077 0 150 0 2 670 1 0 165 1 0 341 0 1 11 1 0 4 0 9 150 chain 83063 chr14 107349540 + 55960881 55961938 MER11C 1089 + 0 1073 42305 23 2 1 222 0 9 62 0 4 65 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 30449 chr14 107349540 + 55974253 55974668 MLT2A1 477 - 0 462 83534 37 3 47 69 7 0 7 14 21 89 0 5 22 0 1 6 8 5 153 chain 12998 chr14 107349540 + 55980784 55980973 L1PA16 3655 - 71 258 148257 7 3 0 15 11 12 153 chain 15277 chr14 107349540 + 55983379 55983635 Tigger3a 397 + 1 319 140551 35 13 18 21 24 83 89 4 0 27 0 2 43 chain 104357 chr14 107349540 + 55988278 55989681 L1MA3 4352 + 2370 3851 35652 11 0 38 40 11 9 48 5 0 31 8 0 19 0 1 12 6 4 140 0 2 448 1 0 208 0 32 145 0 23 270 chain 38069 chr14 107349540 + 55995086 55995546 MER4A1 472 + 0 472 72030 369 0 12 91 chain 22837 chr14 107349540 + 56005256 56005530 AluSc 308 - 24 307 116408 231 0 9 43 chain 5437 chr14 107349540 + 56009108 56009190 L1MCa 1829 + 1051 1138 190639 6 0 6 30 5 4 41 chain 11902 chr14 107349540 + 56017577 56018184 L1MC1 2226 + 907 1485 152590 42 199 165 52 11 10 13 101 118 31 1 0 4 17 11 36 69 65 31 chain 4535 chr14 107349540 + 56059158 56059207 MER8 282 + 0 49 200402 49 chain 24006 chr14 107349540 + 56075771 56076068 L1PA8A 6298 - 8 306 110298 109 1 2 187 chain 16843 chr14 107349540 + 56086180 56086540 THE1B 368 - 1 368 136009 55 1 2 10 1 0 57 68 74 13 46 47 109 chain 31012 chr14 107349540 + 56094181 56094563 L1PA7 6471 - 7 380 82491 163 20 11 199 chain 17078 chr14 107349540 + 56101449 56101795 THE1D 372 - 28 372 135382 110 8 7 15 43 46 27 1 5 32 18 22 6 3 0 19 9 0 55 chain 8458 chr14 107349540 + 56118251 56118349 HY3 101 + 0 99 168523 73 0 1 25 chain 28204 chr14 107349540 + 56167370 56167722 THE1A 353 + 1 353 92291 28 0 1 81 1 0 242 chain 130524 chr14 107349540 + 56193347 56194839 L1PA6 6164 - 2 1511 27958 166 1 2 674 1 5 78 1 0 169 0 5 41 0 2 127 0 6 234 chain 3568 chr14 107349540 + 56199987 56200057 MER33 330 - 86 161 214152 23 1 0 5 13 19 28 chain 4708 chr14 107349540 + 56202303 56202378 MER58A 224 + 41 116 198414 50 1 2 4 1 0 19 chain 25258 chr14 107349540 + 56202960 56203317 THE1C 375 + 0 355 103429 103 3 4 71 23 20 157 chain 4582 chr14 107349540 + 56221848 56221941 MER5A 189 + 86 180 199842 38 27 28 28 chain 8560 chr14 107349540 + 56264734 56264838 MER63A 208 - 53 157 167964 104 chain 211693 chr14 107349540 + 56275268 56277696 L1PA5 6144 - 0 2434 18381 9 2 0 1512 1 0 739 4 13 161 chain 213105 chr14 107349540 + 56277696 56280226 L1PA5 6144 + 1141 3700 18287 28 9 0 275 0 4 137 27 0 249 0 4 633 0 51 654 1 0 69 0 4 420 1 4 27 chain 22984 chr14 107349540 + 56285348 56285884 LTR35A 463 - 0 463 115697 102 0 1 12 4 0 18 30 24 17 5 2 30 1 0 14 8 4 21 1 0 8 3 0 16 10 1 20 12 10 14 46 34 30 12 0 22 1 0 18 12 0 30 4 0 15 chain 74576 chr14 107349540 + 56286740 56288272 HERVE_a-int 7009 - 1 1492 46221 12 1 0 5 3 1 22 34 26 15 4 2 24 0 1 9 2 0 20 32 31 23 1 0 27 3 1 54 3 0 26 4 0 9 2 1 53 1 0 5 3 2 28 1 0 3 1 0 42 12 11 10 6 5 37 1 0 7 2 0 5 1 0 16 1 0 10 2 1 31 1 0 44 1 0 131 7 5 30 19 16 34 5 4 10 1 0 20 10 8 26 42 55 86 2 0 110 2 3 139 132 128 13 14 15 4 1 0 4 1 0 6 0 2 4 1 0 19 chain 7883 chr14 107349540 + 56301282 56301376 MER41A 554 - 460 554 171788 94 chain 88002 chr14 107349540 + 56306073 56307379 LTR12E 1234 + 21 1234 40371 308 10 53 22 1 0 5 0 1 47 2 1 236 41 0 146 9 20 25 1 0 153 101 0 32 0 1 21 1 0 17 20 13 45 0 4 63 chain 17501 chr14 107349540 + 56319532 56319910 THE1D 372 + 0 357 134264 19 0 2 11 1 0 24 55 25 18 5 6 6 1 0 28 0 1 26 43 45 12 6 11 123 chain 159008 chr14 107349540 + 56328348 56330256 L1P1 4361 + 1 1903 23463 85 1 2 486 1 0 128 12 5 470 1 4 407 2 0 315 chain 53289 chr14 107349540 + 56386172 56386773 SVA_B 1603 - 0 679 56834 6 3 0 583 0 81 9 chain 7917 chr14 107349540 + 56396764 56396861 MER44B 551 - 1 98 171546 97 chain 20351 chr14 107349540 + 56398100 56398356 L1PA8A 6298 + 6038 6291 126061 17 5 1 127 0 1 107 chain 3449 chr14 107349540 + 56433801 56433904 ORSL 269 + 5 109 216216 15 52 53 36 chain 40817 chr14 107349540 + 56439497 56439957 LTR2 463 - 0 463 68151 44 0 3 416 chain 477658 chr14 107349540 + 56454900 56460057 L1PA2 6032 - 0 6031 7806 5059 0 874 98 chain 485279 chr14 107349540 + 56460776 56466532 L1PA7 6471 - 14 5764 7549 617 0 1 139 0 2 77 5 0 7 1 0 250 1 0 1861 1 0 682 12 0 31 12 25 126 13 1 57 2 1 293 5 4 255 0 3 104 0 1 285 0 2 18 15 16 385 0 4 316 0 1 186 chain 58062 chr14 107349540 + 56473344 56473979 L1PA3long 6157 - 0 636 53947 147 0 1 488 chain 33722 chr14 107349540 + 56473979 56474339 L1PA3long 6157 + 5035 5395 78059 360 chain 3643 chr14 107349540 + 56477054 56477150 MER33 330 + 185 272 212923 5 0 1 22 39 29 30 chain 12214 chr14 107349540 + 56479043 56479295 MER44A 345 + 104 314 151371 70 1 7 43 21 0 12 22 1 5 5 0 10 6 5 57 chain 547179 chr14 107349540 + 56480731 56486760 L1PA3long 6157 - 0 6157 1811 4185 1 0 1068 0 128 623 0 1 152 chain 21471 chr14 107349540 + 56511982 56512275 MLT2A1 477 - 85 373 122255 7 4 0 181 0 1 23 0 1 9 4 1 65 chain 8770 chr14 107349540 + 56538874 56538974 L1PA4 6152 + 6043 6143 166813 100 chain 5748 chr14 107349540 + 56542200 56542280 MADE1 96 + 0 96 187653 42 1 17 37 chain 24555 chr14 107349540 + 56568990 56569284 AluSp 311 + 5 299 107222 294 chain 10646 chr14 107349540 + 56588850 56588987 L1PA7 6471 + 6330 6468 157616 114 1 2 22 chain 249004 chr14 107349540 + 56629677 56633484 L1MA1 4479 - 328 4230 16311 9 1 0 33 5 4 27 11 15 50 8 18 43 12 8 85 1 0 19 2 0 14 1 0 53 0 3 31 2 0 25 1 0 194 3 0 122 12 9 19 9 22 85 5 0 12 2 1 75 9 5 111 1 7 67 2 0 27 0 6 86 6 5 55 11 12 23 3 1 102 1 0 66 1 0 66 1 0 15 0 3 127 0 3 155 3 0 59 0 1 38 9 4 42 10 14 5 0 3 28 0 5 87 0 2 9 7 6 184 0 2 52 0 3 31 37 0 14 26 0 177 0 1 36 24 97 114 0 1 78 13 0 13 46 93 54 1 5 63 9 16 79 0 4 23 1 5 33 16 9 20 0 1 41 9 10 19 0 8 39 0 2 5 1 0 236 0 1 22 0 4 56 2 0 30 chain 4985 chr14 107349540 + 56664385 56664458 MLT2D 439 + 63 137 195304 31 1 2 41 chain 7242 chr14 107349540 + 56685924 56686018 LTR9B 643 - 82 180 175818 81 1 5 12 chain 520026 chr14 107349540 + 56695351 56701465 L1PA5 6144 + 0 6130 5160 120 0 14 215 0 1 160 0 6 654 9 0 1139 7 0 53 0 2 159 8 6 1404 0 1 331 0 1 64 0 2 5 0 2 204 0 1 114 1 0 625 12 16 13 0 1 817 chain 3976 chr14 107349540 + 56701862 56701908 MADE1 96 + 50 96 207744 46 chain 14027 chr14 107349540 + 56709168 56709355 L1PB2 3958 + 3655 3838 144473 24 1 0 74 2 0 19 1 0 66 chain 40450 chr14 107349540 + 56717038 56717579 MLT2A2 560 - 0 560 68663 73 0 1 73 0 11 253 0 1 80 9 10 22 1 6 30 chain 220316 chr14 107349540 + 56719396 56722351 L1PA7 6471 + 3779 6459 17862 318 0 6 197 1 2 269 1 0 6 0 2 309 0 9 52 3 0 246 0 4 31 300 0 266 0 1 58 6 5 61 0 3 73 0 2 613 0 2 145 chain 35580 chr14 107349540 + 56743888 56744371 MER1A 529 + 41 528 75434 236 6 7 173 7 9 40 1 2 20 chain 20617 chr14 107349540 + 56779049 56779423 MSTA 426 - 21 426 125233 70 15 35 37 6 0 11 12 14 20 17 20 39 0 6 9 10 11 19 1 5 5 0 1 103 chain 23174 chr14 107349540 + 56785164 56785511 THE1B 368 - 0 368 114793 49 5 13 114 4 0 18 17 16 90 6 24 44 chain 29715 chr14 107349540 + 56786646 56787057 MSTA 426 + 0 414 85781 146 16 18 40 4 0 8 0 4 72 5 6 120 chain 430015 chr14 107349540 + 56826343 56831549 L1PA7 6471 - 29 5268 9306 31 2 0 514 0 2 277 0 4 8 0 4 397 0 1 222 1 0 219 10 7 81 0 4 512 4 3 392 0 7 234 0 1 94 0 1 120 1 0 65 0 1 154 14 4 184 6 10 24 0 2 219 3 2 15 0 3 162 0 1 196 1 0 47 0 3 50 0 5 384 0 4 275 0 4 136 0 1 134 0 1 18 chain 270461 chr14 107349540 + 56835325 56839031 L1PA11 4918 - 340 4054 15167 11 2 0 9 1 0 19 10 6 13 8 3 9 4 0 12 0 4 18 2 0 67 2 0 9 4 3 67 5 0 14 0 4 439 3 0 44 0 2 53 0 2 67 4 6 5 1 0 18 1 0 4 5 4 45 0 1 384 7 13 91 8 7 20 4 3 13 1 0 8 0 29 287 48 45 147 67 43 110 0 9 103 0 4 37 0 4 23 5 0 24 0 4 136 0 2 241 27 28 450 0 1 490 chain 41237 chr14 107349540 + 56862715 56863175 L1PA4 6152 - 1131 1590 67503 392 1 0 67 chain 98102 chr14 107349540 + 56863175 56864290 L1PA4 6152 + 5025 6143 37253 727 0 3 244 7 0 7 6 13 124 chain 45028 chr14 107349540 + 56870599 56871369 L1PB1 5432 - 25 741 63023 8 19 0 7 1 0 22 1 0 16 55 41 17 3 0 15 2 0 45 1 0 14 7 6 32 1 0 16 2 0 9 5 1 12 1 0 12 1 0 21 3 0 5 4 5 106 1 0 306 chain 21867 chr14 107349540 + 56872777 56873105 L1PA15 4387 + 1166 1496 120764 33 19 22 43 4 1 35 5 3 157 0 4 32 chain 24090 chr14 107349540 + 56892113 56892465 THE1B 368 + 0 368 109800 40 1 16 85 0 4 20 9 7 122 19 18 56 chain 356901 chr14 107349540 + 56903814 56908536 L1PB1 5432 - 12 4674 11430 16 1 0 34 1 0 24 2 0 14 8 5 15 23 12 4 1 0 15 1 0 44 1 0 16 2 1 53 27 20 30 10 0 14 7 0 288 3 11 172 4 0 10 4 5 725 0 1 170 4 1 161 5 6 63 0 1 797 0 2 190 0 1 120 0 4 336 1 3 154 2 0 464 44 16 7 1 0 412 6 5 212 0 4 4 chain 556780 chr14 107349540 + 56908536 56914549 L1PA2 6032 - 0 6010 635 145 1 0 190 2 1 839 0 1 4825 2 0 9 chain 509565 chr14 107349540 + 56921221 56927261 L1PA5 6144 + 33 6132 6202 92 1 15 1015 0 1 13 9 0 497 1 3 40 1 0 71 0 19 510 20 12 255 0 2 13 0 2 50 0 1 166 0 24 323 2 1 95 0 2 349 3 1 743 1 5 519 0 3 418 1 5 51 0 3 117 2 0 104 3 4 404 1 6 8 5 0 137 chain 17012 chr14 107349540 + 56974759 56974982 Tigger3c 601 - 55 286 135560 184 0 10 29 2 0 8 chain 31415 chr14 107349540 + 56989069 56989472 L1PB3 3668 - 664 1062 81787 14 0 2 297 0 3 6 9 0 15 1 0 61 chain 38970 chr14 107349540 + 56997878 56998453 LTR71B 605 + 1 605 70783 124 11 25 44 24 16 11 4 3 76 1 29 99 6 0 6 3 4 115 1 2 50 chain 29977 chr14 107349540 + 57031227 57031555 AluYb8 318 + 0 318 84884 118 10 0 200 chain 6313 chr14 107349540 + 57042002 57042085 MLT2C1 407 + 16 99 182691 83 chain 11252 chr14 107349540 + 57105919 57106149 L1MA3 4352 + 4119 4328 155216 47 34 17 38 0 4 10 4 0 25 2 0 22 9 8 26 2 1 11 chain 535268 chr14 107349540 + 57106229 57112363 L1PA4 6152 + 0 6143 3555 127 0 14 387 12 0 205 1 0 310 0 2 191 0 1 7 4 0 168 4 9 65 23 0 830 0 4 116 0 4 743 1 0 197 3 0 307 0 4 660 0 4 433 0 3 251 0 2 195 0 4 58 0 3 52 0 3 13 1 0 371 0 1 399 chain 23040 chr14 107349540 + 57121265 57121559 AluSq2 311 + 11 311 115450 81 3 7 32 1 3 177 chain 557660 chr14 107349540 + 57134245 57140279 L1PA2 6032 + 0 6032 537 5179 9 8 780 1 0 65 chain 43822 chr14 107349540 + 57164698 57165248 MLT2A2 560 - 0 560 64425 6 0 4 83 0 6 461 chain 5218 chr14 107349540 + 57290935 57291010 MADE1 96 + 0 91 192843 32 1 17 42 chain 5786 chr14 107349540 + 57296862 57296984 MER44A 345 - 78 207 187321 53 31 36 8 0 3 12 1 0 17 chain 5618 chr14 107349540 + 57330057 57330154 MER53 195 + 39 137 188890 64 15 17 5 1 0 12 chain 4621 chr14 107349540 + 57452808 57452870 MER3 215 - 24 86 199393 62 chain 67182 chr14 107349540 + 57454908 57455635 L1PA2 6032 - 3 730 49576 727 chain 50384 chr14 107349540 + 57455635 57456194 L1P1 4361 + 2719 3278 58725 559 chain 115494 chr14 107349540 + 57457601 57458981 LTR12C 1709 + 0 1709 32607 208 6 26 45 1 28 157 0 3 183 0 278 184 1 0 4 4 2 106 0 4 135 0 1 58 1 0 287 chain 13954 chr14 107349540 + 57480458 57480652 L1MA2 4263 - 150 335 144735 8 1 0 47 7 0 92 1 0 38 chain 3203 chr14 107349540 + 57481863 57481899 MIR 256 + 24 60 220885 36 chain 22537 chr14 107349540 + 57487648 57487920 L1PA7 6471 - 16 297 117861 141 8 17 123 chain 20574 chr14 107349540 + 57490792 57491149 THE1D 372 - 21 372 125382 126 3 1 16 41 42 34 5 9 60 16 7 56 chain 55548 chr14 107349540 + 57503075 57503742 HERVK9-int 4720 - 2221 3838 55387 79 0 924 61 0 2 407 0 24 120 chain 23363 chr14 107349540 + 57517242 57517592 THE1B 368 - 0 368 113854 56 1 2 4 1 0 64 1 0 12 1 0 12 0 4 14 0 1 5 18 19 6 1 0 121 0 15 33 chain 131641 chr14 107349540 + 57522352 57523898 LTR12C 1709 - 0 1709 27709 74 1 0 407 0 4 48 0 1 58 12 9 112 0 159 78 0 2 269 0 1 173 1 0 4 0 1 309 chain 4754 chr14 107349540 + 57562541 57562599 MLT2B3 573 - 515 573 197869 58 chain 27287 chr14 107349540 + 57566426 57567182 L1PA7 6471 + 1401 2161 9927 250 0 4 506 chain 530430 chr14 107349540 + 57567199 57573349 L1PA5 6144 - 0 6144 4133 288 4 0 1727 0 1 577 0 1 381 1 0 973 0 2 150 1 0 630 1 6 173 1 0 46 0 1 18 9 0 316 3 0 8 0 3 843 chain 155491 chr14 107349540 + 57573353 57577661 L1PA7 6471 + 2161 6468 9927 30 8 13 157 8 9 46 8 11 205 19 0 117 9 13 620 0 1 120 1 0 127 5 6 411 2 1 214 0 2 223 0 1 1024 0 1 108 2 0 815 0 2 20 0 1 9 chain 548258 chr14 107349540 + 57578928 57584932 L1PA2 6032 + 0 6029 1670 257 1 0 1822 0 2 611 0 7 1476 0 1 336 1 11 1486 0 6 14 chain 14065 chr14 107349540 + 57594533 57594700 L1PA5 6144 - 0 167 144335 167 chain 16678 chr14 107349540 + 57594700 57594899 L1PA5 6144 + 5764 5963 136466 199 chain 5493 chr14 107349540 + 57595133 57595196 MER2 342 + 136 199 190110 63 chain 20590 chr14 107349540 + 57618765 57619083 Tigger2 2703 + 2326 2649 125334 127 12 23 55 1 0 18 13 5 65 0 3 7 0 2 5 2 0 13 chain 28240 chr14 107349540 + 57646840 57647234 MER11B 1079 - 584 1079 92156 21 18 17 46 1 7 41 0 5 203 5 96 59 chain 46935 chr14 107349540 + 57692366 57693031 MER4A 717 - 4 710 61276 92 23 19 63 1 3 41 12 5 216 0 1 111 1 50 105 chain 54910 chr14 107349540 + 57694772 57695420 L1PA7 6471 + 5659 6307 55763 39 0 2 257 1 0 285 1 0 65 chain 13930 chr14 107349540 + 57695422 57695584 L1PA7 6471 + 6308 6470 144820 162 chain 49012 chr14 107349540 + 57724836 57725406 L1PA7 6471 + 5881 6451 59737 570 chain 12294 chr14 107349540 + 57745560 57745746 L1PA11 4918 + 4326 4508 151034 67 2 1 77 5 3 14 2 1 19 chain 31306 chr14 107349540 + 57793821 57794260 MLT2A1 477 - 0 477 81982 33 25 59 178 0 5 22 14 12 156 0 1 11 chain 470080 chr14 107349540 + 57794260 57801853 HERVL-int 5654 - 0 5654 8030 87 8 10 225 0 1 50 0 3 53 0 1 378 0 1 203 21 16 851 7 8 72 0 1 397 0 1 63 0 5 166 0 1 796 0 1 541 0 2 190 3 0 876 1952 0 104 1 2 549 chain 115202 chr14 107349540 + 57799773 57801192 SVA_D 2077 + 0 1740 32717 437 0 156 285 0 183 42 0 78 135 97 0 30 0 1 41 0 1 4 9 8 339 chain 2792 chr14 107349540 + 57800711 57800766 SVA_D 2077 + 952 1007 110274 55 chain 29960 chr14 107349540 + 57801853 57802273 MLT2A1 477 - 0 477 84940 39 4 0 9 8 44 34 0 1 131 4 25 12 0 1 11 4 1 78 0 5 86 chain 543518 chr14 107349540 + 57804809 57810834 L1PA3long 6157 - 4 6157 2265 3463 1 0 255 0 1 1527 7 135 618 0 1 71 1 0 82 chain 3943 chr14 107349540 + 57821069 57821150 L1MB5 1630 + 1143 1223 208224 13 26 25 42 chain 303951 chr14 107349540 + 57831330 57837407 L1PA7 6471 + 3 6446 13244 307 9 12 89 0 1 82 5 1 101 1 0 62 28 24 528 0 4 28 0 5 104 2208 2530 603 0 3 133 2 1 55 0 4 239 0 7 58 0 1 305 3 4 46 0 1 64 0 12 197 0 3 521 0 1 67 1 2 12 0 7 219 chain 42997 chr14 107349540 + 57832674 57833186 MER9a3 513 + 0 513 65414 140 0 1 247 2 0 27 0 2 96 chain 69823 chr14 107349540 + 57833840 57834728 HERVK9-int 4720 + 36 918 48467 13 8 5 4 1 0 66 1 0 8 1 0 30 2 1 15 1 2 123 1 0 81 1 0 6 8 9 80 0 1 438 chain 13223 chr14 107349540 + 57893490 57893662 L1PA16 3655 + 3015 3191 147383 59 0 7 73 3 0 37 chain 17782 chr14 107349540 + 57898586 57899189 L1M1 2793 + 540 1052 133469 14 2 0 8 11 7 10 1 0 12 3 0 5 38 22 17 83 29 11 0 2 20 45 32 10 13 9 11 3 15 13 25 24 19 2 0 9 1 0 42 39 36 86 1 0 49 chain 24981 chr14 107349540 + 57910182 57910478 L1PA7 6471 + 6165 6463 104904 150 0 1 32 0 1 114 chain 22978 chr14 107349540 + 57955305 57955674 L1PA11 4918 + 4232 4578 115727 96 5 0 60 9 8 10 1 2 67 2 0 33 4 0 11 29 20 15 1 0 13 2 0 11 chain 130889 chr14 107349540 + 57965723 57967193 L1PA5 6144 - 0 1472 27886 146 1 2 584 0 1 739 chain 493033 chr14 107349540 + 57980208 57986414 L1PA6 6164 - 2 6164 7222 197 1 0 293 25 34 329 0 1 7 1 5 95 5 8 419 3 2 58 0 4 458 31 0 15 67 0 20 0 2 83 0 2 251 0 2 170 0 2 240 1 3 133 0 3 9 0 1 333 0 2 124 3 4 256 7 10 218 0 2 42 2 1 49 1 0 118 11 19 198 8 7 69 1 0 417 1 0 37 0 1 605 0 17 220 1 0 118 8 0 303 0 1 145 chain 3409 chr14 107349540 + 57982165 57982206 L1PA6 6164 - 1949 1990 216938 41 chain 104828 chr14 107349540 + 57987289 57988606 L1PA8 5853 - 0 1317 35542 93 1 0 19 3 2 125 13 11 43 1 0 12 2 1 4 0 1 346 0 3 182 0 2 473 chain 73258 chr14 107349540 + 58001480 58002288 L1PA3long 6157 - 5 814 46905 773 1 2 34 chain 19070 chr14 107349540 + 58002305 58002575 L1PA8 5853 - 0 255 129903 93 1 0 19 2 1 49 10 0 12 7 6 65 2 0 10 chain 29186 chr14 107349540 + 58005036 58005407 L1PA7 6471 - 6 377 88115 6 3 0 98 0 1 41 1 0 181 0 3 41 chain 261583 chr14 107349540 + 58005546 58008813 L1PA6 6164 - 10 3321 15613 145 7 6 205 0 1 126 2 15 340 7 11 193 4 5 53 5 6 556 0 1 776 12 13 348 0 19 55 2 0 8 0 2 20 6 10 49 2 1 245 0 1 101 chain 2964 chr14 107349540 + 58016965 58017071 MLT1F2 592 + 75 180 225833 16 59 58 31 chain 87236 chr14 107349540 + 58017344 58018425 L1PA7 6471 - 35 1127 40673 30 0 1 161 0 2 528 0 3 62 9 10 12 0 4 279 chain 140915 chr14 107349540 + 58018464 58019998 L1PA2 6032 - 3 1537 26003 1534 chain 175707 chr14 107349540 + 58051953 58054502 L1PA7 6471 + 4203 6469 21374 70 5 8 25 4 0 360 0 12 67 4 0 27 0 9 158 1 0 10 1 0 257 1 0 6 0 1 191 325 0 223 0 30 41 0 1 191 4 0 100 1 4 191 0 3 119 16 14 143 3 0 5 chain 465968 chr14 107349540 + 58084958 58093036 L1PA7 6471 + 1 6457 8192 196 8 7 272 1 0 370 1 2 5 1 0 136 5 6 402 0 3 96 1 0 164 0 1 333 0 2 357 2273 0 74 0 1 146 1 2 13 1 0 7 0 1 41 0 3 32 7 5 225 0 2 151 0 4 40 0 4 90 0 1 72 3 4 275 13 14 377 5 1 724 6 10 408 0 1 218 0 627 77 0 2 337 0 1 114 chain 15157 chr14 107349540 + 58087311 58087473 L1PA3long 6157 - 2071 2233 140629 162 chain 186313 chr14 107349540 + 58087473 58089539 L1PA3long 6157 + 4083 6149 20390 58 0 1 79 1 0 672 0 1 846 1 0 409 chain 32013 chr14 107349540 + 58095031 58095407 L1PA7 6471 - 14 391 80843 114 0 1 262 chain 3598 chr14 107349540 + 58099366 58099412 L1MC1 2226 - 28 73 213674 14 1 0 31 chain 336610 chr14 107349540 + 58110337 58114136 L1PA4 6152 - 1 3798 11980 842 0 4 282 11 5 803 1 0 970 0 2 780 1 0 109 chain 18002 chr14 107349540 + 58121185 58121460 L1PB2 3958 - 120 392 132848 63 1 0 22 2 0 17 10 9 27 0 1 20 1 0 62 1 0 23 8 10 18 chain 300042 chr14 107349540 + 58134072 58137445 L1PA4 6152 - 15 3399 13423 40 0 4 402 1 2 381 0 4 540 0 1 1080 0 1 479 0 1 19 1 0 52 1 0 301 0 2 70 1 0 5 chain 5009 chr14 107349540 + 58140851 58140919 L1ME2z 1083 + 438 505 195036 39 2 1 27 chain 54898 chr14 107349540 + 58142549 58143766 L1PB2 3958 + 3080 3838 55771 13 0 1 110 2 1 38 0 6 58 2 0 53 0 3 14 5 0 10 452 0 51 2 0 14 1 0 4 9 8 81 1 0 72 1 0 64 2 1 22 0 1 50 2 0 20 1 0 63 chain 33214 chr14 107349540 + 58144713 58145138 L1PA7 6471 + 1927 2355 78857 212 1 0 78 0 3 104 10 11 20 chain 216834 chr14 107349540 + 58145138 58147825 L1PA7 6471 + 2356 5044 18064 282 5 0 313 4 3 63 0 3 456 9 10 4 1 0 58 0 1 374 0 1 514 0 3 52 6 5 4 0 1 19 0 2 425 1 0 9 1 0 74 1 0 12 chain 21866 chr14 107349540 + 58147825 58148078 L1PA7 6471 + 5045 5298 120767 253 chain 94405 chr14 107349540 + 58148209 58149366 L1PA7 6471 + 5298 6470 38233 200 0 4 19 0 1 92 0 3 521 0 1 159 6 12 160 chain 23147 chr14 107349540 + 58156352 58156615 L1PA5 6144 + 5881 6144 114905 263 chain 43515 chr14 107349540 + 58160012 58160511 MER9a3 513 + 14 513 64790 127 0 1 116 1 0 255 chain 80970 chr14 107349540 + 58161704 58162608 L1PA3long 6157 + 4962 5866 43205 904 chain 93928 chr14 107349540 + 58162636 58163803 L1PA8 5853 + 4679 5853 38369 213 0 3 115 0 2 9 8 17 44 0 2 212 0 1 235 2 0 30 1 0 46 2 0 74 1 0 12 3 1 49 1 0 16 1 0 93 chain 16419 chr14 107349540 + 58174374 58175322 THE1D-int 1627 + 32 247 137156 116 733 0 99 chain 78416 chr14 107349540 + 58175322 58176330 LTR13 1007 - 0 1007 44312 27 7 5 162 5 6 96 27 28 297 4 5 308 2 0 73 chain 10585 chr14 107349540 + 58183055 58183194 MER85 139 - 1 139 157892 33 10 9 96 chain 455694 chr14 107349540 + 58187808 58193446 HERVL-int 5654 + 0 5653 8552 101 1 2 6 1 0 17 0 1 419 30 10 266 18 7 27 10 15 253 1 0 9 7 11 85 2 1 125 0 1 440 1 0 119 1 0 11 0 2 142 0 9 111 0 12 705 0 5 1036 14 10 92 0 1 43 0 2 380 9 10 742 0 1 178 3 12 15 0 1 218 chain 31003 chr14 107349540 + 58193447 58193833 MLT2A1 477 + 0 383 82506 169 4 1 213 chain 462157 chr14 107349540 + 58207519 58212962 L1PA5 6144 + 654 6144 8320 128 0 46 336 14 5 44 2 1 253 0 2 17 0 1 141 6 19 54 0 1 749 0 1 365 0 1 339 2 1 43 1 0 524 1 0 46 0 1 143 5 4 175 0 1 497 0 1 6 0 6 8 20 0 4 2 0 42 0 1 177 1 0 71 0 9 893 0 1 184 1 0 149 chain 54169 chr14 107349540 + 58243854 58244499 L1PA6 6164 + 5514 6156 56248 475 8 6 9 1 0 152 chain 45697 chr14 107349540 + 58255382 58255950 L1PA7 6471 + 2956 3540 62313 139 0 4 304 0 9 25 0 3 100 chain 74426 chr14 107349540 + 58255954 58256885 L1PA7 6471 + 3548 4481 46304 460 1 2 146 8 4 7 0 4 102 1 0 4 0 2 202 chain 43806 chr14 107349540 + 58256885 58257417 L1PA7 6471 + 4483 5023 64441 186 0 8 346 chain 14716 chr14 107349540 + 58257417 58257589 L1PA7 6471 + 5024 5196 142216 172 chain 103539 chr14 107349540 + 58257589 58258841 L1PA7 6471 + 5197 6468 35855 424 2 0 38 0 4 22 0 2 19 1 0 4 0 1 271 0 16 344 0 1 116 2 0 9 chain 45165 chr14 107349540 + 58258841 58259623 L1PB1 5432 + 4677 5413 62671 20 1 2 112 32 33 259 1 2 9 21 0 24 1 0 6 1 0 12 7 3 9 3 1 51 2 1 15 1 0 43 0 1 16 3 0 6 15 6 18 23 19 25 1 0 21 1 0 13 1 0 9 chain 43776 chr14 107349540 + 58260581 58261290 L1PB3 3668 + 2498 3220 64484 133 1 13 12 85 75 99 11 26 7 4 0 123 7 5 13 0 2 214 chain 328339 chr14 107349540 + 58267105 58271986 L1PA11 4918 + 50 4629 12265 28 2 0 6 16 14 17 1 0 15 2 0 51 1 0 32 2 0 5 2 1 192 6 4 11 10 11 330 10 14 15 3 1 244 0 1 106 4 10 42 1 0 4 1 2 29 0 2 6 0 26 132 2 1 201 12 16 196 4 1 155 0 1 59 22 23 24 0 5 19 1 4 21 8 12 68 6 1 21 5 6 12 1 0 16 0 4 15 0 3 246 0 5 50 1 17 63 0 1 43 0 2 13 16 3 554 316 0 103 0 2 266 8 7 235 4 5 286 0 2 116 6 4 18 15 10 57 2 1 13 2 0 68 2 0 8 6 5 9 0 2 10 21 11 10 13 9 15 1 0 13 60 44 18 chain 39755 chr14 107349540 + 58292301 58292810 L1PA10 4194 + 3652 4161 69678 293 13 17 154 3 0 34 1 0 11 chain 43306 chr14 107349540 + 58309448 58309991 MLT2A2 560 + 0 560 65040 142 0 1 148 0 1 69 0 3 38 1 12 48 0 1 97 chain 68254 chr14 107349540 + 58321938 58322752 L1PA6 6164 + 5188 6007 49138 127 2 0 677 0 7 8 chain 11398 chr14 107349540 + 58322887 58323035 L1PA7 6471 + 6298 6456 154705 22 3 13 123 chain 67140 chr14 107349540 + 58324651 58325396 L1PA5 6144 + 5387 6132 49592 745 chain 19079 chr14 107349540 + 58344703 58344978 L1PA15 4387 - 377 655 129883 21 0 3 39 2 1 13 1 0 41 3 1 50 0 1 11 4 0 10 0 7 80 chain 33639 chr14 107349540 + 58366476 58366957 LTR12F 595 - 0 595 78189 276 6 5 79 1 34 15 0 86 32 20 18 17 3 1 32 chain 6312 chr14 107349540 + 58367336 58367411 L1PA11 4918 + 4109 4184 182698 75 chain 24146 chr14 107349540 + 58367411 58367821 L1PA11 4918 + 4189 4578 109494 142 0 1 5 0 1 55 2 1 13 2 0 46 4 0 21 2 0 14 0 2 18 4 0 9 46 36 14 2 0 11 chain 3134 chr14 107349540 + 58370246 58370280 MLT2F 649 + 460 494 222288 34 chain 6464 chr14 107349540 + 58373957 58374090 Tigger1 2417 + 2251 2386 181523 72 40 42 21 chain 104430 chr14 107349540 + 58374562 58375834 L1PA8A 6298 - 7 1289 35634 105 0 1 539 1 7 146 1 4 480 chain 27769 chr14 107349540 + 58390578 58390927 THE1B 368 + 0 348 93802 172 2 1 175 chain 24323 chr14 107349540 + 58403782 58404077 AluSp 311 - 9 303 108529 174 1 0 120 chain 526526 chr14 107349540 + 58417723 58424162 L1PA7 6471 + 0 6469 4542 140 38 55 205 0 4 62 1 0 875 0 1 190 0 1 653 0 5 8 0 1 320 0 4 108 0 2 73 0 1 545 0 1 60 0 1 53 6 8 236 1 0 217 2 0 149 18 3 445 5 7 54 0 1 707 0 1 107 1 0 54 0 1 263 1 0 89 1 0 83 0 1 110 0 1 226 0 1 183 1 2 138 1 4 10 chain 4399 chr14 107349540 + 58451762 58451810 MADE1 96 + 48 96 201940 48 chain 20690 chr14 107349540 + 58473399 58473632 L1PA5 6144 + 5905 6138 125003 233 chain 6163 chr14 107349540 + 58474549 58474716 L1MC4 1079 + 708 878 183849 43 77 80 47 chain 558370 chr14 107349540 + 58499257 58505257 L1HS 6032 + 1 6006 465 741 2 1 1838 0 5 1720 0 1 1699 chain 406430 chr14 107349540 + 58507701 58512340 L1PA5 6144 + 0 6144 9899 326 0 1518 470 1 0 389 3 0 521 0 5 225 15 6 981 9 0 856 0 4 843 chain 32080 chr14 107349540 + 58525060 58525482 MER41B 635 - 88 499 80721 121 11 0 290 chain 8095 chr14 107349540 + 58541718 58541815 L1PA7 6471 + 5710 5807 170514 97 chain 56635 chr14 107349540 + 58541820 58542475 L1PA7 6471 + 5807 6464 54755 249 0 1 79 0 1 182 1 2 131 1 0 12 chain 24743 chr14 107349540 + 58546854 58547146 AluSp 311 - 19 311 106208 292 chain 29830 chr14 107349540 + 58569247 58569557 AluYb8 318 + 0 310 85349 310 chain 5674 chr14 107349540 + 58578210 58578274 MLT1B 390 - 44 108 188347 64 chain 16602 chr14 107349540 + 58586699 58586939 Tigger3a 397 - 8 258 136664 14 1 2 73 15 14 128 0 10 9 chain 44521 chr14 107349540 + 58587232 58587803 MER4E1 777 - 11 777 63556 115 0 173 44 0 1 82 1 20 98 0 1 212 1 2 18 chain 285374 chr14 107349540 + 58588998 58592222 HERV17-int 4347 + 1125 4347 14332 320 9 10 566 1 0 933 2 0 1393 chain 27899 chr14 107349540 + 58592536 58592862 LTR17 781 + 0 326 93372 326 chain 24357 chr14 107349540 + 58593917 58594284 THE1B 368 + 0 368 108336 169 1 0 29 0 3 7 7 11 13 1 0 8 1 0 44 12 9 13 1 0 4 1 2 56 chain 3378 chr14 107349540 + 58600688 58600776 MIR 256 + 64 151 217528 16 36 35 36 chain 29318 chr14 107349540 + 58620360 58621156 Tigger3b 1229 - 85 644 87453 132 6 10 11 8 18 101 8 1 7 0 9 38 104 7 21 21 24 31 5 6 16 197 35 7 0 2 83 chain 28859 chr14 107349540 + 58627819 58628129 AluYg6 310 - 0 310 89622 310 chain 3782 chr14 107349540 + 58640185 58640242 L1MB3 1562 + 1433 1487 210631 5 2 0 31 1 0 18 chain 23362 chr14 107349540 + 58657127 58657395 AluY 311 + 0 298 113855 41 0 30 227 chain 6575 chr14 107349540 + 58664236 58664326 MLT1C 463 + 219 306 180657 5 3 0 82 chain 5582 chr14 107349540 + 58665769 58665833 MLT1C 463 - 342 406 189254 64 chain 3894 chr14 107349540 + 58666065 58666110 MADE1 96 - 51 96 208950 45 chain 23156 chr14 107349540 + 58670834 58671123 AluY 311 + 17 304 114865 106 5 3 178 chain 24632 chr14 107349540 + 58693307 58693609 AluSp 311 - 1 303 106815 162 0 1 15 1 0 124 chain 7441 chr14 107349540 + 58700249 58700351 Tigger2a 444 + 289 390 174512 40 2 1 60 chain 4024 chr14 107349540 + 58723429 58723477 Tigger4a 237 - 141 189 207033 48 chain 8946 chr14 107349540 + 58730570 58730699 MER30 238 - 0 184 165890 27 0 27 46 1 29 55 chain 10988 chr14 107349540 + 58762573 58762711 HSMAR1 1287 - 1138 1278 156243 25 0 2 113 chain 24001 chr14 107349540 + 58783312 58783597 AluSp 311 - 25 311 110325 4 0 1 281 chain 25654 chr14 107349540 + 58786655 58786963 AluSc 308 - 0 308 101473 308 chain 20699 chr14 107349540 + 58792890 58793133 AluY 311 + 17 261 124967 109 0 1 134 chain 8383 chr14 107349540 + 58824266 58824438 MER30 238 + 52 232 168945 41 3 7 16 6 5 42 0 5 8 27 0 8 0 27 21 chain 17651 chr14 107349540 + 58835344 58835648 Tigger4b 360 - 0 356 133839 46 12 11 23 0 4 100 0 8 29 15 38 23 20 38 36 chain 4894 chr14 107349540 + 58844160 58844220 MER53 195 + 0 60 196326 60 chain 111072 chr14 107349540 + 58845078 58847114 L1PB1 5432 - 10 1694 33914 21 1 0 9 1 0 22 1 0 24 2 0 14 1 0 9 2 0 11 9 0 12 2 0 4 1 0 15 1 0 8 1 2 35 1 0 15 2 1 41 0 2 7 353 14 12 1 0 5 2 1 23 5 0 12 1 0 8 0 4 62 10 4 26 0 2 138 5 7 136 0 2 6 4 3 83 0 1 11 12 11 127 17 17 286 20 24 212 0 3 38 0 1 67 4 8 78 chain 22661 chr14 107349540 + 58858615 58858902 AluSp 311 - 13 305 117266 231 10 15 46 chain 29145 chr14 107349540 + 58870838 58871146 AluYa5 310 - 2 310 88341 308 chain 27365 chr14 107349540 + 58883637 58883993 THE1B 368 + 0 368 95064 44 0 15 110 13 12 11 2 0 176 chain 11646 chr14 107349540 + 58897645 58897799 L1MB3 1562 - 151 308 153711 60 1 0 87 0 4 6 chain 3749 chr14 107349540 + 58902255 58902337 L1MA5A 2387 - 110 157 211155 15 35 0 32 chain 4077 chr14 107349540 + 58908293 58908339 HY1 111 + 9 55 206226 46 chain 3909 chr14 107349540 + 58909809 58909854 MER81 114 + 30 75 208722 45 chain 12078 chr14 107349540 + 58918751 58918994 L1PB1 5432 + 5210 5427 151876 10 2 1 16 2 1 42 1 0 16 3 0 6 16 6 19 2 0 5 1 0 16 2 0 22 1 0 22 1 0 12 1 0 18 2 0 5 chain 16446 chr14 107349540 + 58966871 58967590 MER82 654 + 69 456 137079 156 435 97 23 1 6 36 37 38 31 chain 21461 chr14 107349540 + 58973124 58973417 AluSx4 309 + 10 297 122296 54 10 0 194 9 13 26 chain 528454 chr14 107349540 + 58992015 58998893 L1PA7 6471 + 35 6451 4359 376 0 1 125 1 0 125 0 2 219 4 6 342 0 4 29 1 0 131 1 4 132 153 5 601 1 0 502 8 10 29 0 2 1329 1 0 657 0 12 128 0 4 702 0 1 108 0 3 16 350 0 224 7 12 255 13 11 178 1 2 129 chain 292410 chr14 107349540 + 59046620 59050153 L1PA7 6471 - 1 3522 13868 12 0 2 21 1 12 312 5 4 105 0 1 248 0 1 131 2 0 108 0 1 563 1 0 289 1 0 453 2 1 142 0 1 185 26 0 357 0 1 17 0 1 129 5 6 418 chain 62918 chr14 107349540 + 59055210 59055887 SVA_F 1814 + 1138 1814 51480 666 1 0 10 chain 134601 chr14 107349540 + 59055915 59057428 L1PA5 6144 - 2902 4415 27059 232 5 0 1165 0 5 111 chain 253827 chr14 107349540 + 59057428 59060309 L1PA5 6144 + 3238 6135 16040 41 1 0 416 0 2 69 0 1 1282 1 0 245 1 0 416 0 14 78 0 2 81 0 1 145 1 0 104 chain 22382 chr14 107349540 + 59061508 59061779 AluSp 311 + 28 304 118575 193 0 5 78 chain 20358 chr14 107349540 + 59077071 59077348 L1MA4 2864 + 2384 2672 126039 70 0 1 20 0 4 22 1 0 4 0 4 116 1 3 9 0 1 34 chain 3863 chr14 107349540 + 59096566 59096609 MER57B2 428 + 385 428 209412 43 chain 2537 chr14 107349540 + 59153577 59153640 LTR12C 1709 - 718 782 169193 59 0 1 4 chain 18525 chr14 107349540 + 59153644 59153854 LTR12C 1709 - 641 851 131437 210 chain 17937 chr14 107349540 + 59174056 59174261 L1PA4 6152 - 107 313 133012 41 0 1 164 chain 7916 chr14 107349540 + 59174261 59174351 L1PA4 6152 + 6048 6138 171548 90 chain 16665 chr14 107349540 + 59190853 59191125 L1PA15 4387 - 79 340 136495 38 17 14 39 5 4 6 4 0 22 1 0 55 1 0 26 1 0 57 chain 11941 chr14 107349540 + 59209793 59209932 L1PA7 6471 + 6314 6454 152439 7 0 1 132 chain 4045 chr14 107349540 + 59215428 59215473 MER44D 709 - 597 642 206731 45 chain 5680 chr14 107349540 + 59237876 59237953 MADE1 96 + 3 96 188305 30 1 17 46 chain 20791 chr14 107349540 + 59266370 59266621 AluSp 311 - 1 253 124642 198 1 2 52 chain 35835 chr14 107349540 + 59269862 59270400 L1PA13 3608 - 120 661 75084 22 8 7 11 8 4 32 0 5 9 8 7 26 0 2 7 4 1 19 1 0 63 2 0 141 1 0 69 0 8 64 7 8 36 chain 13487 chr14 107349540 + 59301105 59301380 LTR12C 1709 + 771 1079 146399 66 1 0 34 0 2 11 0 119 60 87 0 16 chain 5244 chr14 107349540 + 59301277 59301354 LTR12C 1709 + 744 877 166362 5 2 17 6 0 1 49 1 41 14 chain 38165 chr14 107349540 + 59355886 59356381 L1PA6 6164 + 5672 6162 71895 33 3 1 49 1 0 77 1 0 168 11 10 152 chain 27728 chr14 107349540 + 59368700 59369078 THE1D-int 1627 + 0 482 93942 15 6 8 322 1 103 34 chain 122010 chr14 107349540 + 59388154 59389990 L1PA16 3655 + 1726 3570 30383 62 3 0 5 9 11 106 1 0 22 8 10 56 65 17 31 2 1 114 0 8 134 6 1 53 1 7 18 9 17 22 0 1 6 1 0 71 2 7 83 2 0 86 14 13 44 0 42 124 1 0 24 1 0 4 7 6 199 2 3 67 1 0 89 2 0 122 1 0 108 0 2 48 chain 276114 chr14 107349540 + 59391256 59395105 L1PA10 4194 + 250 4146 14868 15 9 7 14 46 20 7 1 0 22 2 0 24 1 0 4 1 0 11 4 6 14 1 0 9 1 0 22 50 51 5 2 0 84 0 6 9 8 2 101 0 2 72 35 36 25 12 21 133 11 13 305 0 4 27 1 2 257 0 9 37 5 6 106 0 1 331 0 1 218 0 2 163 1 0 175 0 1 45 8 12 14 0 5 29 2 0 99 3 0 49 10 10 9 1 0 25 18 51 385 4 5 5 0 1 84 0 1 193 0 4 70 0 3 216 0 4 132 0 1 35 3 0 29 chain 23601 chr14 107349540 + 59395756 59396056 AluY 311 + 0 297 112579 19 9 6 272 chain 4781 chr14 107349540 + 59402053 59402108 THE1B-int 1605 - 0 55 197571 55 chain 25631 chr14 107349540 + 59403704 59404069 THE1B 368 - 0 368 101577 54 6 7 64 5 4 7 1 0 18 3 7 5 0 1 32 1 0 169 chain 4881 chr14 107349540 + 59424651 59424715 MLT1A0 366 + 79 143 196479 4 1 0 36 0 1 23 chain 40583 chr14 107349540 + 59449245 59449844 L1PB1 5432 - 141 730 68464 10 1 0 45 1 0 15 2 1 34 0 1 17 2 0 8 4 0 16 1 0 6 1 0 22 17 13 172 0 3 134 4 5 87 chain 13431 chr14 107349540 + 59483382 59483726 L1MA8 2339 + 1852 2188 146569 30 42 44 8 2 0 47 8 18 10 6 5 61 60 46 43 3 0 24 chain 42546 chr14 107349540 + 59493372 59493897 L1PA8A 6298 + 5751 6289 65966 120 0 10 227 0 1 36 8 10 134 chain 4507 chr14 107349540 + 59504505 59504555 MADE1 96 - 45 95 200703 50 chain 127611 chr14 107349540 + 59525014 59526419 SVA_D 2077 - 6 2066 28670 543 0 37 54 0 535 103 0 77 674 0 6 31 chain 181063 chr14 107349540 + 59575705 59578111 L1PBa1 4058 + 1667 4040 20893 99 0 2 120 0 1 183 2 6 52 0 1 155 0 2 491 12 1 655 1 0 116 16 8 7 0 4 95 1 0 7 1 0 29 1 0 36 11 9 103 3 2 17 1 0 12 6 0 15 2 0 6 27 22 19 1 0 19 3 1 7 1 0 5 1 0 9 1 0 15 1 0 42 chain 28192 chr14 107349540 + 59579756 59580062 AluYb8 318 - 0 318 92337 169 0 12 137 chain 9186 chr14 107349540 + 59675804 59676019 MER72 723 + 453 723 164624 65 90 145 60 chain 253362 chr14 107349540 + 59699364 59702550 L1PA8 5853 - 6 3191 16063 86 2 1 71 21 19 18 5 6 38 2 0 44 6 5 40 0 4 505 2 0 22 0 4 287 0 5 358 1 0 84 0 3 57 0 2 12 2 0 128 0 3 282 0 1 34 0 1 57 18 0 702 0 5 37 0 1 4 1 0 39 1 0 220 chain 2756 chr14 107349540 + 59746441 59746479 L1ME2 1516 + 702 738 229363 31 2 0 5 chain 7574 chr14 107349540 + 59768693 59768871 Tigger4a 237 + 49 196 173706 12 26 7 60 28 20 28 4 0 20 chain 41315 chr14 107349540 + 59852405 59853041 L1MA3 4352 - 3706 4330 67513 25 13 15 47 4 0 123 13 12 118 11 3 14 0 2 113 1 0 9 14 9 81 2 1 34 0 4 14 chain 77927 chr14 107349540 + 59862825 59863705 L1PA4 6152 + 5252 6145 44559 132 0 1 44 2 15 448 1 0 253 chain 412525 chr14 107349540 + 59867555 59872441 L1P2 5180 - 131 5030 9731 375 4 3 73 0 1 239 0 4 1127 0 9 55 3 1 202 0 2 226 5 0 62 0 11 117 0 3 21 0 1 198 1 0 5 1 2 364 1 0 508 4 1 191 1 0 109 0 1 345 1 0 6 1 0 272 1 0 47 12 11 208 3 2 53 1 0 44 chain 3887 chr14 107349540 + 59872452 59872498 L1P3 4156 - 3560 3606 209054 46 chain 537467 chr14 107349540 + 59876173 59882325 L1PA5 6144 + 0 6144 3241 114 1 0 587 1 0 1612 1 0 227 0 1 629 1 0 32 1 0 547 16 8 189 1 3 547 0 1 1313 1 2 332 chain 24939 chr14 107349540 + 59899597 59899890 AluY 311 + 11 306 105111 96 1 2 17 0 1 179 chain 225309 chr14 107349540 + 59912082 59914836 HERVH-int 3825 + 86 3825 17572 120 0 3 124 2 1 40 3 1 50 5 793 366 1 0 102 6 11 307 26 0 82 7 8 149 0 1 21 5 6 30 0 1 151 0 1 53 1 3 608 10 220 260 0 2 225 chain 26901 chr14 107349540 + 59916096 59916495 LTR7 482 + 0 474 96626 68 9 47 109 12 13 29 0 31 8 0 3 111 12 14 41 chain 26863 chr14 107349540 + 59920727 59921090 MLT2A1 477 + 0 477 96765 70 0 1 99 4 1 8 0 1 23 1 2 143 0 114 15 chain 13539 chr14 107349540 + 59945537 59945720 MER30 238 - 6 207 146215 103 4 23 32 2 1 42 chain 29276 chr14 107349540 + 59974571 59974997 LTR3A 482 + 0 420 87663 109 0 1 5 0 1 28 0 1 83 49 40 112 0 1 26 1 0 13 chain 538746 chr14 107349540 + 59979898 59986045 L1PA4 6152 + 0 6152 3035 3177 1 0 2127 1 5 682 13 15 146 chain 41175 chr14 107349540 + 59987747 59988271 MLT2A2 560 + 0 560 67673 17 0 4 60 2 1 96 0 33 349 chain 539799 chr14 107349540 + 60018211 60024344 L1PA5 6144 + 4 6144 2848 1132 0 2 249 0 1 190 0 1 694 0 1 39 1 0 1289 0 2 268 0 1 64 1 0 694 0 5 609 4 0 899 chain 21292 chr14 107349540 + 60055894 60056186 AluSg7 307 + 8 284 122898 17 0 5 199 29 8 47 chain 39747 chr14 107349540 + 60058390 60058892 LTR3B_ 500 + 0 500 69691 302 2 1 76 12 11 110 chain 93244 chr14 107349540 + 60078432 60081081 HUERS-P1-int 2401 + 148 2139 38584 4 1 0 14 9 4 31 9 0 4 48 0 26 1 0 12 5 0 33 4 0 8 68 49 12 5 1 13 31 7 6 1 0 11 1 0 45 3 0 7 1 0 38 1 0 8 2 0 23 18 0 26 7 4 14 11 2 15 9 6 24 2 1 96 10 0 15 14 17 13 0 1 89 11 5 4 1 0 122 0 2 44 2 1 14 1 0 6 2 0 35 4 0 14 2 1 18 0 1 28 2 0 10 1 0 28 3 0 80 0 1 27 18 14 67 0 1 30 2 0 10 1 0 14 1 0 22 54 51 49 308 0 10 1 0 42 3 4 51 22 21 8 4 0 22 75 53 13 13 11 14 9 0 11 213 133 6 1 0 12 2 1 38 1 0 13 5 0 8 0 1 4 34 11 25 1 0 3 1 0 10 4 6 4 1 0 9 1 0 4 6 5 45 2 0 15 chain 7652 chr14 107349540 + 60104445 60104575 Tigger1 2417 - 768 941 173217 30 7 12 63 8 46 22 chain 115070 chr14 107349540 + 60115729 60117133 L1PA8 5853 + 4448 5853 32766 539 1 0 8 1 4 9 0 5 551 1 0 44 2 0 71 1 0 61 2 1 19 1 0 93 chain 30763 chr14 107349540 + 60117158 60117561 L1PREC2 3366 + 2255 2658 82933 27 4 3 232 4 5 136 chain 3324 chr14 107349540 + 60122719 60122821 L1MB7 1623 + 1438 1532 218492 6 7 0 6 3 0 28 1 0 12 17 23 5 3 0 14 chain 532959 chr14 107349540 + 60124164 60131191 L1PA7 6471 + 0 6466 3856 411 0 1 266 9 4 232 0 15 87 0 1 196 0 4 536 5 0 883 1 3 488 0 1 22 0 4 375 1 0 21 1 0 279 13 0 432 1 0 57 0 2 268 13 1 45 503 0 541 0 1 170 66 0 279 0 5 167 5 15 496 7 0 6 10 17 135 chain 38186 chr14 107349540 + 60128881 60129309 L1PA5 6144 - 1 429 71860 428 chain 380679 chr14 107349540 + 60131854 60136331 L1PA6 6164 + 1693 6162 10731 640 0 1 33 0 1 454 0 1 367 2 1 175 0 2 155 18 0 863 0 7 476 0 1 446 1 0 693 1 0 153 chain 30305 chr14 107349540 + 60139339 60139657 AluYb8 318 - 0 318 83905 318 chain 16177 chr14 107349540 + 60160086 60160405 L1PB1 5432 - 5 288 137823 4 1 0 5 1 0 14 1 0 13 1 0 16 6 5 24 2 0 14 1 0 4 5 1 19 2 3 8 16 0 16 1 0 45 1 0 15 2 1 52 2 0 10 4 0 14 chain 325660 chr14 107349540 + 60200931 60205367 L1PA11 4918 + 7 4629 12361 35 2 0 32 8 5 30 5 4 15 11 10 40 1 0 36 5 2 1389 0 196 12 4 1 99 0 2 241 6 17 22 2 1 5 0 1 11 6 7 26 15 17 28 0 2 250 1 0 86 1 0 201 12 24 58 0 1 517 0 3 291 0 1 277 0 1 180 0 1 5 0 1 42 0 6 76 0 1 13 6 0 65 2 1 69 16 15 10 1 0 20 4 0 9 8 3 10 29 24 13 60 44 18 chain 5296 chr14 107349540 + 60275221 60275283 MER65D 500 + 0 62 192062 62 chain 5473 chr14 107349540 + 60290230 60290334 L1PA14 3548 - 3346 3448 190279 27 11 13 13 2 0 3 2 0 46 chain 3509 chr14 107349540 + 60298478 60298522 Ricksha_c 1012 + 538 584 215228 15 0 2 29 chain 9006 chr14 107349540 + 60304826 60304945 L1PA16 3655 - 64 180 165562 14 3 0 102 chain 24214 chr14 107349540 + 60325892 60326232 THE1B 368 + 0 368 109125 44 0 15 48 0 1 30 1 14 17 1 0 22 0 2 9 9 7 159 chain 110125 chr14 107349540 + 60326232 60327836 THE1B-int 1605 + 0 1600 34174 42 32 17 230 5 6 133 3 28 40 13 19 7 1 0 153 0 1 4 28 32 70 9 15 222 1 0 4 22 24 209 33 0 210 0 1 133 chain 29423 chr14 107349540 + 60341215 60341618 L1MA3 4352 - 816 1386 86970 80 5 1 52 0 1 24 1 0 106 0 4 122 0 167 13 chain 234652 chr14 107349540 + 60357672 60360290 L1PA4 6152 + 3524 6143 17053 1291 0 1 1327 chain 14246 chr14 107349540 + 60372489 60372861 MSTB1 431 + 34 415 143737 20 8 10 38 8 9 19 20 14 8 0 4 35 1 0 6 78 90 21 6 0 9 15 18 80 chain 89449 chr14 107349540 + 60375208 60376864 L1PB1 5432 - 28 1303 39824 13 1 0 21 1 0 24 56 45 5 3 0 16 2 1 42 1 0 16 5 1 53 2 0 9 402 43 10 1 2 482 10 12 198 1 0 282 chain 42796 chr14 107349540 + 60380639 60381109 L1PA4 6152 - 1 478 65664 148 0 7 322 chain 21228 chr14 107349540 + 60381109 60381337 L1PA4 6152 + 5433 5661 123114 228 chain 22439 chr14 107349540 + 60390372 60390667 AluY 311 + 5 286 118301 22 10 1 220 5 0 38 chain 557533 chr14 107349540 + 60413222 60419241 L1PA2 6032 - 1 6029 553 12 2 0 2771 0 1 288 0 11 147 0 1 2065 2 0 732 chain 464001 chr14 107349540 + 60419373 60425177 L1PA8 5853 - 0 5803 8257 30 0 1 61 2 1 19 2 1 49 14 12 69 2 0 46 1 0 559 3 0 316 1 0 5 0 1 346 1 0 133 2 1 43 0 3 197 0 1 176 8 22 167 0 2 83 0 1 516 0 1 5 0 1 103 1 0 54 0 3 237 0 1 17 0 1 20 1 0 169 0 2 110 1 2 242 1 0 337 0 9 292 0 3 321 1 0 395 0 1 66 0 4 270 36 24 194 32 13 13 1 0 10 2 0 22 chain 18901 chr14 107349540 + 60438041 60438320 L1PA13 3608 - 131 399 130364 9 1 0 20 9 5 47 2 0 6 1 0 55 1 0 62 2 0 64 chain 31752 chr14 107349540 + 60442600 60443088 MER1A 529 + 41 529 81244 39 17 17 73 3 0 5 19 22 81 1 0 176 20 21 54 chain 22710 chr14 107349540 + 60446062 60446338 AluY 311 + 8 291 117031 88 3 9 25 1 2 159 chain 30327 chr14 107349540 + 60446368 60446695 L1PA3long 6157 + 5830 6157 83853 327 chain 3386 chr14 107349540 + 60452228 60452269 MER66C 541 + 369 410 217359 41 chain 318291 chr14 107349540 + 60458055 60461728 L1PA4 6152 + 7 6143 12660 468 0 4 677 0 3 187 0 1 152 0 1 262 1 0 53 3 0 218 4 3 792 0 2451 22 0 5 740 0 3 94 chain 20137 chr14 107349540 + 60475935 60476292 THE1B 368 - 0 368 126722 12 13 14 90 22 20 18 0 4 10 1 0 4 12 16 11 1 0 99 2 4 13 0 6 32 2 0 15 chain 20621 chr14 107349540 + 60477791 60478148 THE1B 368 - 0 368 125220 119 24 25 10 0 1 4 1 0 4 18 25 11 1 0 105 11 17 34 2 0 13 chain 51673 chr14 107349540 + 60490369 60490984 L1PA7 6471 - 5 620 57845 143 16 15 136 0 1 320 chain 518635 chr14 107349540 + 60503498 60509595 L1PA5 6144 - 13 6144 5319 1125 0 1 1077 0 3 249 0 1 472 1 2 31 1 0 397 0 4 423 1 0 8 0 2 423 0 1 461 6 18 19 1 6 140 5 6 91 9 0 1029 3 17 125 chain 189723 chr14 107349540 + 60512506 60517467 L1PA11 4918 - 289 4905 20082 18 47 33 13 2 0 11 1 0 11 12 10 11 10 5 9 2 0 19 1 0 17 2 0 65 2 0 6 7 6 64 5 0 198 2 0 5 19 21 143 1 0 273 1 18 10 3 1 258 1 0 52 1 2 226 25 7 33 1814 1835 370 0 4 165 4 0 252 316 6 45 6 7 181 2 1 5 2 0 32 1 0 43 6 3 7 2 0 13 1 0 29 3 2 6 2 0 6 2 1 29 2 0 29 chain 137831 chr14 107349540 + 60514094 60515901 L1PA11 4918 + 1242 3069 26511 173 1 0 5 0 4 34 0 3 56 2 5 196 0 3 92 4 1 188 3 4 9 1 0 50 0 4 44 0 1 72 1 0 354 1 0 20 18 21 190 1 6 292 chain 60955 chr14 107349540 + 60527480 60528298 Tigger1 2417 + 1500 2356 52358 113 0 33 11 8 0 51 0 1 13 0 6 133 0 1 48 0 2 58 0 3 27 8 11 245 2 0 40 1 0 60 chain 347624 chr14 107349540 + 60539906 60546118 L1PA7 6471 + 0 6424 11678 159 0 1 29 0 1 83 28 29 311 13 14 48 25 36 29 0 12 486 0 4 27 11 24 31 17 0 61 6 9 196 0 1 132 0 1 241 0 12 148 6 12 128 1823 1973 327 1 3 385 1 2 256 1 0 401 0 2 395 0 8 407 chain 154642 chr14 107349540 + 60542148 60543940 L1PA5 6144 - 9 1818 24029 125 18 18 65 0 2 645 0 4 44 6 13 868 0 4 21 chain 37103 chr14 107349540 + 60547416 60547915 MLT2A2 560 + 0 547 73377 14 1 5 157 8 41 182 7 18 130 chain 42436 chr14 107349540 + 60561740 60562319 PRIMA4_LTR 623 - 0 623 66101 68 0 2 139 0 4 24 0 2 15 0 4 17 6 5 28 0 2 50 2 3 19 0 6 32 0 26 90 1 0 36 1 0 51 chain 55317 chr14 107349540 + 60567361 60568085 MER4E 760 + 0 737 55512 20 5 4 96 0 4 27 22 25 185 0 4 86 1 0 140 0 4 142 chain 35285 chr14 107349540 + 60603239 60603693 LTR46 455 - 0 455 75811 47 9 13 90 1 0 116 7 5 184 chain 39036 chr14 107349540 + 60617036 60617481 L1PA5 6144 - 0 445 70683 445 chain 6424 chr14 107349540 + 60637545 60637620 MLT1B 390 - 12 87 181829 75 chain 4050 chr14 107349540 + 60649264 60649316 L1MB4 1306 - 635 687 206640 52 chain 3057 chr14 107349540 + 60656150 60656187 MIR 256 + 49 87 223855 27 0 1 10 chain 18148 chr14 107349540 + 60677068 60677440 THE1B 368 - 0 368 132465 56 7 6 75 0 1 5 121 117 108 chain 4268 chr14 107349540 + 60691409 60691457 MLT1C 463 + 57 105 203644 48 chain 34558 chr14 107349540 + 60698223 60698645 L1PA8A 6298 + 5303 5722 76817 186 3 1 90 1 0 142 chain 31927 chr14 107349540 + 60703934 60704373 MLT2A1 477 + 0 476 80971 17 0 4 148 4 1 11 0 1 22 0 1 180 21 55 36 chain 6146 chr14 107349540 + 60776394 60776527 MER3 215 + 56 215 184021 42 47 73 44 chain 5156 chr14 107349540 + 60799031 60799116 L1MA4 2864 + 1483 1569 193481 54 11 12 20 chain 156067 chr14 107349540 + 60803086 60804957 L1PA7 6471 - 18 1906 23851 429 5 15 391 1 0 354 3 0 193 2 0 349 1 3 48 0 8 11 0 1 26 0 2 58 chain 280093 chr14 107349540 + 60806690 60809870 L1PA4 6152 + 2954 6143 14637 217 8 6 68 0 1 1065 0 1 19 0 1 971 1 5 287 6 7 219 0 3 319 chain 26088 chr14 107349540 + 60836996 60837415 MSTA 426 + 0 426 99672 134 35 32 47 4 0 12 21 27 48 9 17 109 chain 3235 chr14 107349540 + 60843156 60843204 Tigger1 2417 - 718 773 220339 22 1 0 18 0 8 7 chain 511896 chr14 107349540 + 60848349 60854494 L1PA6 6164 + 0 6157 5990 236 0 2 216 13 11 32 5 4 17 0 2 47 1 0 9 0 1 109 0 1 142 1 2 43 0 1 433 0 1 885 0 2 129 21 0 230 0 1 441 0 1 197 1 2 147 0 1 956 0 2 59 0 4 312 1 2 32 0 1 293 0 1 308 0 11 60 0 4 15 0 2 425 1 0 75 0 2 50 5 1 45 1 0 152 chain 85685 chr14 107349540 + 60861176 60862444 L1MA1 4479 - 317 1561 41274 11 1 0 9 9 8 26 2 0 30 1 0 126 38 33 60 3 0 5 0 1 5 5 3 19 1 0 71 1 0 16 2 0 25 1 0 195 2 0 25 7 14 91 3 0 74 5 0 46 13 11 7 1 0 24 1 2 69 8 6 6 0 1 77 0 4 77 2 0 27 1 0 40 chain 202890 chr14 107349540 + 60872628 60875267 L1PA10 4194 - 44 2722 19003 34 3 0 34 1 0 180 0 3 99 0 4 37 0 1 81 0 12 79 4 0 180 0 2 46 2 9 211 2 0 7 5 7 62 5 6 78 0 1 341 6 7 216 29 12 240 0 1 4 1 0 127 9 13 17 6 8 296 8 34 189 chain 534762 chr14 107349540 + 60887900 60894342 L1PA4 6152 - 1 6150 3620 1799 0 4 117 0 1 709 6 5 351 1 0 851 0 1 168 315 0 300 0 4 397 0 4 145 0 9 549 0 1 734 chain 29046 chr14 107349540 + 60891911 60892217 AluYa5 310 - 4 310 88780 306 chain 38153 chr14 107349540 + 60896838 60897409 MER4B 649 - 21 649 71907 57 8 7 139 7 0 5 2 0 64 12 33 11 0 1 56 0 2 54 0 42 89 21 22 46 chain 510411 chr14 107349540 + 60909770 60915911 L1PA6 6164 + 0 6161 6130 481 0 1 80 5 4 1208 18 1 183 1 0 161 0 3 195 8 10 212 0 3 623 0 1 24 0 1 19 8 20 80 0 1 990 0 2 62 0 4 58 7 8 457 5 6 417 0 11 25 0 2 410 6 0 68 0 1 298 0 1 23 2 0 7 chain 60631 chr14 107349540 + 60917862 60918559 L1PA5 6144 + 5439 6138 52502 299 0 1 71 0 1 327 chain 3576 chr14 107349540 + 60919033 60919078 L1MA2 4263 + 4069 4113 214029 36 1 0 8 chain 15210 chr14 107349540 + 60929390 60929626 MER30 238 + 0 238 140745 93 0 3 11 27 29 62 3 0 40 chain 3109 chr14 107349540 + 60933180 60933217 MADE1 96 + 59 96 222760 37 chain 255737 chr14 107349540 + 60939128 60942067 L1PA4 6152 - 9 2958 15950 12 1 0 122 0 3 6 3 0 116 4 1 582 0 1 224 0 1 44 1 2 390 1 0 279 0 4 846 0 1 256 0 3 29 0 4 23 chain 24441 chr14 107349540 + 60966741 60967043 AluSp 311 - 8 310 107856 302 chain 6302 chr14 107349540 + 60968132 60968323 MLT1C 463 + 224 429 182776 22 16 26 21 76 80 56 chain 509580 chr14 107349540 + 60989977 60996142 L1PA6 6164 - 4 6164 6199 183 0 1 145 1 2 303 3 0 128 7 6 76 0 4 969 0 1 16 0 1 794 2 1 6 0 1 344 0 1 11 0 1 919 0 1 1431 1 18 230 24 0 84 25 27 7 8 0 18 0 1 430 chain 10060 chr14 107349540 + 60998233 60998349 L1PA4 6152 + 6023 6141 160274 7 0 2 109 chain 26699 chr14 107349540 + 61001464 61001837 THE1C 375 + 0 375 97326 103 0 1 78 30 32 135 1 0 26 chain 4561 chr14 107349540 + 61003629 61003682 MER33 330 + 5 58 200100 53 chain 43029 chr14 107349540 + 61004705 61005185 L1PA5 6144 - 4 484 65386 480 chain 31099 chr14 107349540 + 61007263 61007857 L1PREC2 3366 - 338 890 82345 18 87 68 20 3 1 12 76 59 44 1 0 54 2 0 69 5 2 190 0 2 13 chain 5428 chr14 107349540 + 61013163 61013229 HY3 101 - 11 77 190723 66 chain 23689 chr14 107349540 + 61021420 61021777 L1MA2 4263 + 3770 4114 112089 25 15 12 149 11 9 93 7 0 47 1 0 9 chain 23044 chr14 107349540 + 61071247 61071585 THE1C 375 + 43 375 115427 52 20 23 161 1 0 37 8 0 23 0 1 9 1 0 26 chain 88547 chr14 107349540 + 61071585 61072839 THE1C-int 1605 + 0 1238 40170 12 7 8 59 0 1 38 0 1 51 3 0 40 0 1 8 0 1 107 0 6 107 5 12 71 5 6 56 0 1 22 2 0 77 10 12 56 6 0 32 18 0 388 14 5 60 chain 2911 chr14 107349540 + 61073784 61073815 U3 216 + 0 31 226841 31 chain 28982 chr14 107349540 + 61077631 61078006 THE1C 375 - 0 375 89081 26 1 0 226 14 15 108 chain 118651 chr14 107349540 + 61078006 61079628 THE1C-int 1605 - 0 1605 31554 63 1 0 364 14 5 383 18 0 37 6 0 56 10 12 73 2 0 26 0 1 56 5 6 71 5 12 107 0 6 107 0 1 7 0 1 41 3 0 37 1 0 5 0 1 7 0 1 39 0 1 59 7 8 12 chain 26661 chr14 107349540 + 61079628 61080009 THE1C 375 - 0 375 97451 26 1 0 9 0 1 14 8 0 46 1 0 161 20 23 95 chain 28943 chr14 107349540 + 61092934 61093237 AluYa5 310 - 7 310 89261 303 chain 26708 chr14 107349540 + 61136272 61136621 THE1A 353 - 2 353 97292 149 1 0 61 0 4 24 5 4 109 chain 24068 chr14 107349540 + 61143207 61143493 AluSg7 307 - 13 299 109942 16 3 4 142 1 0 124 chain 4877 chr14 107349540 + 61149012 61149114 L1MA3 4352 - 0 95 196520 18 25 20 26 1 0 6 1 0 25 chain 4022 chr14 107349540 + 61151401 61151503 MIR 256 - 73 175 207044 35 15 13 10 19 21 23 chain 3007 chr14 107349540 + 61159674 61159792 L1MA5A 2387 - 12 115 224899 13 2 0 20 2 1 10 53 41 18 chain 24793 chr14 107349540 + 61168868 61169156 AluSp 311 - 13 301 105930 288 chain 117425 chr14 107349540 + 61197194 61198550 L1PA6 6164 + 4806 6162 31986 508 2 1 252 0 1 594 chain 19900 chr14 107349540 + 61232012 61232247 L1PA7 6471 + 6232 6465 127481 227 2 0 6 chain 21494 chr14 107349540 + 61234484 61234771 AluSc5 308 - 17 298 122165 8 5 0 72 0 1 84 6 4 112 chain 2771 chr14 107349540 + 61266813 61266844 Tigger13a 716 + 207 238 229186 31 chain 508229 chr14 107349540 + 61297926 61304394 L1PA7 6471 - 21 6468 6303 7 1 0 13 1 10 100 6 0 6 1 8 684 2 0 164 1 0 15 0 3 449 8 6 23 0 1 60 5 7 924 1 4 387 1 6 27 0 1 4 1 0 44 1 0 143 14 27 75 0 1 314 0 1 86 10 1 142 150 67 213 0 3 32 0 1 49 11 16 4 0 1 217 0 2 24 2 7 36 0 1 281 1 0 317 0 1 717 11 29 283 4 6 68 1 2 327 chain 8688 chr14 107349540 + 61318106 61318252 Tigger1 2417 + 55 198 167261 5 2 0 27 20 19 92 chain 193347 chr14 107349540 + 61318263 61320649 L1PA8 5853 - 0 2383 19747 15 19 17 60 2 1 19 2 1 50 1 0 11 1 0 71 2 0 44 1 0 210 0 18 249 1 3 42 0 1 33 16 0 663 0 1 874 chain 80089 chr14 107349540 + 61324297 61325253 L1PA6 6164 - 2 961 43543 842 0 5 7 6 4 101 chain 4680 chr14 107349540 + 61351196 61351251 L1MA2 4263 - 4027 4082 198754 55 chain 30854 chr14 107349540 + 61353962 61354318 L1PA3long 6157 - 0 365 82762 12 1 4 201 0 5 36 0 1 106 chain 238277 chr14 107349540 + 61354318 61356973 L1PA3long 6157 + 3146 5801 16862 777 0 1 719 1 0 193 8 7 457 0 1 500 chain 42512 chr14 107349540 + 61357124 61357673 MLT2A2 560 - 0 560 65999 4 0 1 34 0 1 98 4 0 5 0 11 305 1 3 98 chain 20665 chr14 107349540 + 61374267 61374523 AluSp 311 + 51 305 125084 69 2 0 185 chain 543049 chr14 107349540 + 61375042 61381187 L1PA4 6152 - 2 6148 2331 146 3 2 2054 1 0 60 0 2 5 1 0 166 0 1 579 0 1 250 0 3 1105 4 0 540 1 0 652 0 2 578 chain 2966 chr14 107349540 + 61396234 61396270 L1MB8 1703 - 1162 1198 225745 36 chain 365252 chr14 107349540 + 61402957 61407083 L1PA4 6152 - 9 4136 11225 221 0 4 1009 3 0 551 0 4 583 5 0 636 0 1 30 0 1 11 1 0 1076 chain 14006 chr14 107349540 + 61417234 61417428 MER30 238 + 26 238 144560 72 1 2 21 8 25 92 chain 6612 chr14 107349540 + 61441051 61441150 U6 107 + 7 104 180361 23 11 9 65 chain 4872 chr14 107349540 + 61462489 61462614 L1MC1 2226 + 1961 2076 196567 19 3 0 14 2 0 27 9 8 18 21 17 12 chain 258196 chr14 107349540 + 61471161 61474045 L1PA3long 6157 + 3252 6157 15801 10 2 0 678 5 7 13 0 4 678 0 5 657 0 4 224 0 2 603 0 6 14 chain 527414 chr14 107349540 + 61476117 61482188 L1PA4 6152 - 11 6092 4455 137 1 3 13 7 11 669 0 4 223 4 0 626 0 3 511 1 0 260 1 0 504 1 0 108 0 1 1327 0 1 1143 15 16 133 1 2 386 chain 18697 chr14 107349540 + 61503055 61503325 L1PA8 5853 + 5587 5853 130956 22 2 0 66 5 4 11 1 0 9 0 1 40 2 1 19 1 0 87 0 1 5 chain 16508 chr14 107349540 + 61520559 61521792 L1PA14 3548 - 107 1324 36083 27 1 0 18 1 0 4 5 0 14 4 2 4 0 2 27 4 0 9 3 2 111 1 0 78 7 6 6 2 0 13 8 4 111 7 3 47 2 0 14 3 1 250 1 0 28 0 4 93 0 4 22 9 15 157 3 2 139 chain 567394 chr14 107349540 + 61521836 61527866 L1HS 6032 - 2 6032 63 6030 chain 4806 chr14 107349540 + 61527869 61528228 L1PA14 3548 - 1324 1672 36083 125 9 12 26 1 2 146 2 3 26 16 0 8 chain 527396 chr14 107349540 + 61558997 61565112 L1PA5 6144 - 8 6144 4458 764 0 2 585 0 2 182 9 8 248 0 4 193 0 1 895 0 5 794 0 2 134 5 4 1041 9 10 36 0 1 55 9 0 955 1 0 4 0 1 75 4 18 117 chain 174453 chr14 107349540 + 61583482 61585612 Harlequin-int 5206 - 2945 5074 21545 138 1 0 146 0 1 626 0 6 169 0 1 374 1 2 36 0 2 78 1 0 199 5 0 106 0 2 81 2 0 68 4 0 7 0 4 18 7 12 23 0 1 11 3 1 5 9 0 12 chain 43893 chr14 107349540 + 61591403 61591953 MER41A 554 + 0 554 64340 133 12 10 326 7 12 5 0 1 67 chain 28692 chr14 107349540 + 61599969 61600360 LTR7 482 - 11 482 90355 147 0 10 20 0 31 38 0 1 109 23 61 54 chain 321952 chr14 107349540 + 61601620 61605472 HERVH-int 3825 - 0 3825 12524 379 3 0 7 9 12 978 0 1 146 0 1 826 1 0 44 9 0 155 0 1 262 0 1 232 2 1 10 3 4 7 0 2 56 1 0 4 41 0 40 1 38 14 36 25 9 1 0 38 5 0 199 1 0 333 chain 68417 chr14 107349540 + 61610402 61611265 THE1B-int 1605 - 5 1589 49082 67 0 1 271 1 5 347 0 3 48 0 713 129 chain 10794 chr14 107349540 + 61647127 61647280 MER30 238 - 0 174 157016 79 0 6 13 0 2 13 4 17 44 chain 20333 chr14 107349540 + 61647579 61647844 AluYc 301 + 35 281 126122 79 13 0 148 9 3 16 chain 6289 chr14 107349540 + 61694405 61694486 MADE1 96 + 0 96 182890 45 0 15 36 chain 2555 chr14 107349540 + 61697862 61697910 MIR 256 + 70 121 232409 24 7 9 13 0 1 4 chain 17474 chr14 107349540 + 61700259 61700606 THE1C 375 + 1 363 134317 59 8 22 8 14 0 39 23 23 33 48 64 99 2 1 14 chain 16496 chr14 107349540 + 61702955 61703144 MER41A 554 + 0 189 136938 189 chain 39151 chr14 107349540 + 61703977 61704553 MER4D1 891 + 230 784 70538 182 2 1 16 1 0 154 0 1 14 0 7 50 55 35 43 8 0 51 chain 27707 chr14 107349540 + 61705999 61706380 MER48 407 - 0 407 94013 234 1 0 22 0 20 27 18 25 43 1 0 5 0 1 30 chain 16748 chr14 107349540 + 61718288 61718551 L1MA2 4263 - 211 472 136261 6 0 2 79 9 7 108 17 18 30 3 0 11 chain 24600 chr14 107349540 + 61753227 61753503 AluSp 311 + 15 291 106995 276 chain 23520 chr14 107349540 + 61780283 61780638 THE1B 368 - 0 368 113018 66 1 0 9 1 0 28 1 0 62 3 5 26 12 11 16 14 14 76 0 15 40 chain 14503 chr14 107349540 + 61797572 61797753 MER30 238 - 0 198 142883 109 5 22 67 chain 5057 chr14 107349540 + 61840241 61840317 MSTA-int 1630 - 0 85 194568 39 11 20 26 chain 9342 chr14 107349540 + 61899646 61899753 L1PA8A 6298 - 7 114 163845 107 chain 3806 chr14 107349540 + 61918960 61919091 Arthur1A 176 + 25 170 210302 26 42 56 16 1 0 4 16 17 26 chain 46674 chr14 107349540 + 61931117 61931722 L1PA8 5853 - 0 613 61475 91 3 2 19 3 2 42 1 0 7 14 15 17 0 8 17 0 6 19 2 0 46 1 0 201 1 0 121 chain 19861 chr14 107349540 + 61941193 61941433 L1PA6 6164 + 5915 6161 127616 38 0 9 192 3 0 7 chain 45911 chr14 107349540 + 61996142 61996632 L1PA2 6032 + 5538 6028 62120 490 chain 4093 chr14 107349540 + 62024606 62024783 MLT1I 406 + 249 406 206035 20 116 96 41 chain 8424 chr14 107349540 + 62051659 62051793 MER53 195 + 1 194 168712 59 5 63 32 5 6 33 chain 3489 chr14 107349540 + 62087961 62087999 MLT2D 439 + 391 429 215532 38 chain 89388 chr14 107349540 + 62124423 62125405 L1PA5 6144 + 5161 6144 39848 132 0 1 850 chain 41167 chr14 107349540 + 62138582 62139083 LTR10D 510 - 0 510 67685 17 0 1 141 4 0 87 0 2 153 0 8 15 6 8 78 chain 33247 chr14 107349540 + 62141219 62141683 L1PA8 5853 - 0 458 78806 93 1 0 19 7 6 27 35 33 67 1 0 44 1 0 169 chain 131912 chr14 107349540 + 62174034 62175497 L1PA4 6152 - 9 1476 27653 835 0 4 628 chain 12523 chr14 107349540 + 62201487 62201641 L1PA5 6144 + 5992 6144 150145 140 3 1 11 chain 25074 chr14 107349540 + 62206780 62207082 AluSc 308 - 6 308 104434 302 chain 8475 chr14 107349540 + 62222342 62222445 MSTB-int 1649 - 1465 1571 168430 75 0 3 28 chain 13321 chr14 107349540 + 62222568 62222752 MER4A 717 + 500 691 147005 83 10 17 91 chain 3056 chr14 107349540 + 62226915 62226947 MLT1J2 417 + 98 130 223894 32 chain 42668 chr14 107349540 + 62232715 62233253 LTR10C 591 + 1 585 65822 293 0 39 130 0 8 27 2 1 86 chain 16227 chr14 107349540 + 62247294 62247550 L1P4 1494 - 89 596 137678 15 19 17 23 2 0 16 0 4 57 0 251 124 chain 21972 chr14 107349540 + 62262788 62263050 AluY 311 + 17 296 120346 115 0 1 73 0 16 74 chain 34504 chr14 107349540 + 62309277 62309651 L1PA4 6152 + 5775 6149 76898 374 chain 237899 chr14 107349540 + 62310075 62313793 L1MA2 4263 - 790 4258 16886 368 0 1 199 7 10 192 10 14 44 2 4 35 0 3 38 5 9 23 3 0 15 0 1 261 0 1 16 0 1 257 23 22 26 14 15 22 2 5 12 14 6 86 315 0 37 0 7 167 4 5 32 0 1 81 0 5 11 0 4 20 0 3 42 0 9 123 7 1 120 0 1 4 0 14 44 5 6 48 1 14 162 6 0 5 10 0 18 4 8 13 1 4 296 1 0 57 7 11 30 0 4 47 1 0 22 2 1 59 9 8 46 9 14 20 2 0 22 37 37 57 0 3 22 1 0 17 chain 92741 chr14 107349540 + 62318143 62319505 L1PA11 4918 - 290 1605 38734 17 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 1 0 10 49 36 19 2 1 14 12 10 69 3 2 62 6 0 114 6 9 23 0 5 89 16 1 188 1 0 206 0 1 35 1 0 97 0 1 249 chain 13298 chr14 107349540 + 62386985 62387178 L1PA8 5853 - 0 185 147089 48 0 1 36 14 8 16 1 0 54 1 0 8 1 0 14 chain 7907 chr14 107349540 + 62398481 62398571 L1PA4 6152 - 11 101 171600 90 chain 20543 chr14 107349540 + 62399031 62399403 THE1D 372 - 0 372 125495 75 3 4 43 6 12 17 31 33 21 0 1 83 41 31 52 chain 257399 chr14 107349540 + 62409586 62412928 L1PA7 6471 + 3445 6461 15854 58 1 0 1655 4 0 306 0 1 149 0 2 520 324 0 325 chain 50588 chr14 107349540 + 62426871 62427545 L1PREC2 3366 - 587 1261 58591 20 9 7 307 0 1 236 4 5 98 chain 18505 chr14 107349540 + 62453177 62453384 L1PA5 6144 - 6 213 131481 207 chain 17427 chr14 107349540 + 62459904 62460135 L1PA8 5853 + 5614 5843 134442 68 1 0 10 1 0 48 2 1 77 2 3 22 chain 3945 chr14 107349540 + 62508035 62508082 L1MC2 1988 - 141 188 208201 47 chain 34940 chr14 107349540 + 62511015 62511451 L1PA8 5853 - 0 429 76278 93 1 0 19 2 1 42 1 0 19 1 0 70 2 0 49 1 0 136 chain 545627 chr14 107349540 + 62512172 62518337 L1PA4 6152 - 1 6152 1995 586 1 2 269 1 0 786 26 7 4 1 0 808 1 0 929 0 1 913 0 5 1131 0 1 709 chain 15592 chr14 107349540 + 62523805 62524000 MLT2A2 560 - 367 560 139609 13 2 0 180 chain 23925 chr14 107349540 + 62557449 62557805 THE1B 368 - 0 368 110781 56 7 6 66 8 16 10 0 1 4 4 8 32 1 0 48 1 2 119 chain 5710 chr14 107349540 + 62597454 62597518 L1PA8A 6298 - 11 75 188014 64 chain 3138 chr14 107349540 + 62597535 62597568 L1PA7 6471 - 114 147 222205 33 chain 115961 chr14 107349540 + 62601863 62603460 THE1B-int 1605 - 1 1605 32470 97 14 0 11 6 20 64 0 1 464 8 11 174 0 9 194 6 16 90 40 23 60 1 0 90 0 1 260 5 6 13 chain 31811 chr14 107349540 + 62608998 62609428 MER75 514 + 44 512 81149 152 6 5 51 6 25 46 0 18 146 0 2 23 chain 201205 chr14 107349540 + 62613591 62616288 L1PB1 5432 + 1268 5102 19122 74 0 1 52 1 0 12 72 1212 6 5 0 217 1 0 128 0 6 115 5 2 242 6 7 56 0 1 285 1 2 31 4 11 162 1 2 64 1 0 202 7 8 349 23 14 80 13 12 91 1 0 390 chain 16119 chr14 107349540 + 62636889 62637134 L1PA8 5853 - 0 238 137996 23 9 0 9 0 9 52 1 0 19 2 1 7 1 0 42 2 0 12 3 1 63 chain 21567 chr14 107349540 + 62637716 62638057 THE1A 353 - 0 353 121894 26 18 15 62 0 2 6 6 33 89 23 9 111 chain 131479 chr14 107349540 + 62640505 62641954 L1PA3long 6157 - 0 1454 27757 7 0 1 788 0 3 57 0 1 597 chain 19061 chr14 107349540 + 62650981 62651309 THE1A 353 + 0 351 129936 20 3 1 21 0 25 14 45 44 108 11 12 106 chain 17014 chr14 107349540 + 62659981 62660250 L1PA8 5853 + 5587 5847 135555 23 2 0 69 1 0 8 15 8 44 3 2 13 1 0 6 2 1 48 0 4 34 chain 538823 chr14 107349540 + 62665826 62671970 L1PA4 6152 - 0 6150 3020 6 0 5 618 0 1 603 19 0 62 0 1 937 0 1 235 1 0 3 1 0 314 1 16 33 0 3 131 0 1 1938 1 0 620 0 1 621 chain 116063 chr14 107349540 + 62697733 62699289 THE1B-int 1605 + 0 1600 32430 171 0 1 4 1 0 16 19 34 190 13 38 344 0 1 10 3 10 5 7 0 184 0 1 5 4 3 110 0 1 59 1 2 241 1 2 168 chain 26368 chr14 107349540 + 62699295 62699639 THE1B 368 + 1 348 98540 12 2 0 23 0 6 130 4 3 173 chain 3475 chr14 107349540 + 62708605 62708642 MER11A 1151 - 384 421 215736 37 chain 5758 chr14 107349540 + 62709145 62709299 MER53 195 + 9 167 187570 30 0 1 24 67 70 33 chain 24615 chr14 107349540 + 62713237 62713566 THE1B 368 + 42 366 106912 120 11 10 30 1 0 89 3 0 75 chain 10081 chr14 107349540 + 62729489 62729621 MER85 139 - 0 131 160172 34 5 4 93 chain 24376 chr14 107349540 + 62749728 62750003 AluY 311 + 0 271 108210 129 4 0 142 chain 162342 chr14 107349540 + 62751216 62753037 L1PA3long 6157 - 0 1821 22954 1660 4 5 4 1 0 152 chain 214125 chr14 107349540 + 62753037 62755436 L1HS 6032 + 1808 4211 18220 1320 0 4 1079 chain 9912 chr14 107349540 + 62756843 62756954 L1PA5 6144 - 6 117 161007 111 chain 270141 chr14 107349540 + 62772400 62794281 L1PA4 6152 - 12 3445 15177 131 0 2 7 3 0 55 2 0 1458 0 2 83 18457 0 610 0 10 100 0 1 516 1 0 458 chain 34587 chr14 107349540 + 62774183 62774571 L1PA4 6152 - 1798 2188 76774 208 0 2 180 chain 67126 chr14 107349540 + 62791019 62792161 L1MA1 4479 - 289 1315 49603 18 7 0 10 3 0 11 1 0 9 1 0 18 19 17 29 1 0 68 0 1 57 3 0 5 1 0 88 1 0 14 3 2 17 1 0 7 103 30 21 1 0 5 0 1 7 1 0 16 2 0 25 1 0 133 0 1 60 6 0 131 4 0 57 0 1 16 5 0 52 5 0 12 1 0 69 1 2 16 chain 146066 chr14 107349540 + 62794281 62795927 L1PA4 6152 + 4505 6152 25089 658 0 1 988 chain 13320 chr14 107349540 + 62813715 62813932 MER30 238 - 0 238 147009 43 3 0 61 2 26 49 23 23 36 chain 5198 chr14 107349540 + 62817662 62817722 L1MB1 2102 - 102 162 193039 60 chain 30523 chr14 107349540 + 62817755 62818099 L1PA4 6152 - 13 356 83379 247 1 0 96 chain 15055 chr14 107349540 + 62852910 62853242 THE1D 372 + 0 360 141155 13 2 0 6 1 3 32 1 24 56 110 115 111 chain 29665 chr14 107349540 + 62860992 62861308 AluYb8 318 - 2 318 85980 316 chain 152296 chr14 107349540 + 62862338 62864059 L1PA5 6144 - 12 1737 24302 368 0 1 470 1 0 14 0 4 868 chain 37211 chr14 107349540 + 62889809 62890284 L1PA8 5853 - 381 863 73225 242 3 4 138 0 1 48 8 11 19 1 3 16 chain 20792 chr14 107349540 + 62890284 62890566 L1PA8 5853 + 5573 5853 124636 6 0 4 27 2 0 69 1 0 14 1 0 45 4 3 19 2 1 92 chain 176313 chr14 107349540 + 62912812 62915192 L1PA7 6471 - 1 2121 21327 9 2 0 254 0 1 503 1 0 20 1 0 58 0 7 227 0 2 25 270 0 415 5 4 414 0 4 5 0 1 171 chain 10732 chr14 107349540 + 62919060 62919210 LTR8 732 - 596 732 157269 21 15 0 99 0 1 15 chain 93998 chr14 107349540 + 62961077 62962163 L1PA5 6144 - 0 1093 38351 274 0 1 305 2 0 44 0 1 218 0 8 118 1 0 124 chain 16978 chr14 107349540 + 62979760 62980099 THE1B 368 - 0 368 135648 104 51 66 23 7 6 75 41 56 38 chain 16980 chr14 107349540 + 62984080 62984288 L1PA5 6144 - 16 224 135642 208 chain 463835 chr14 107349540 + 62987815 62993233 L1PA5 6144 + 0 6138 8265 1162 0 15 217 15 707 93 0 2 161 0 4 827 2 1 54 0 4 104 9 13 727 3 0 115 0 1 983 0 1 100 0 4 87 0 1 300 8 3 310 1 2 140 chain 561090 chr14 107349540 + 63002569 63008572 L1HS 6032 + 2 6032 312 380 2 22 282 0 3 3540 0 4 1799 chain 24566 chr14 107349540 + 63016907 63019619 L1MA3 4352 + 1834 4325 107165 95 2149 1957 19 1 0 19 28 33 64 1 0 72 50 26 80 1 2 34 4 0 12 13 11 24 1 0 6 1 0 27 1 0 10 chain 79088 chr14 107349540 + 63026461 63027358 L1PA5 6144 - 679 1578 44009 177 0 1 256 0 1 464 chain 59213 chr14 107349540 + 63027360 63028028 L1PA5 6144 + 5468 6140 53276 620 0 4 48 chain 23896 chr14 107349540 + 63068592 63068896 AluYc 301 + 7 295 110921 108 14 0 62 2 1 71 1 0 46 chain 71179 chr14 107349540 + 63076228 63077388 L1PB2 3958 + 2713 3838 47857 135 27 25 45 8 7 22 6 0 7 1 9 12 6 5 98 0 1 55 0 1 18 0 1 150 8 6 53 1 0 11 5 0 65 2 0 101 1 0 43 22 3 31 1 0 64 1 0 11 0 1 14 23 21 17 16 14 15 9 8 56 chain 13048 chr14 107349540 + 63095580 63095730 L1PA4 6152 - 9 159 148036 150 chain 550199 chr14 107349540 + 63103281 63109426 L1PA3long 6157 + 4 6157 1421 611 0 10 74 7 0 8 1 8 27 3 0 301 1 0 147 1 4 1265 3 1 3547 0 1 149 chain 4232 chr14 107349540 + 63117467 63117528 MLT2B4 540 + 429 492 204148 17 1 3 43 chain 27009 chr14 107349540 + 63138444 63138887 MLT2A1 477 + 0 477 96255 140 0 1 28 1 5 153 34 39 16 31 51 10 7 11 23 chain 6385 chr14 107349540 + 63160640 63160806 LTR53 516 - 120 295 182138 19 72 81 75 chain 28017 chr14 107349540 + 63175681 63175977 AluYd8 298 + 0 296 92944 296 chain 38187 chr14 107349540 + 63203058 63203565 LTR19A 502 + 0 501 71855 65 10 4 230 3 2 152 0 1 47 chain 38837 chr14 107349540 + 63214754 63215272 MER41C 542 - 1 542 70969 111 0 1 92 0 2 7 0 19 106 1 0 4 7 8 144 0 1 46 chain 20290 chr14 107349540 + 63232423 63232770 L1MA1 4479 + 3874 4205 126251 5 0 3 65 1 0 5 3 0 119 8 7 29 13 11 24 1 0 9 1 0 11 2 1 9 6 0 18 3 0 15 chain 4879 chr14 107349540 + 63237865 63237922 MLT1B 390 + 280 337 196495 57 chain 77585 chr14 107349540 + 63247762 63248816 MER11C 1089 - 16 1089 44699 10 0 1 70 0 4 56 0 1 11 1 0 54 0 1 121 6 7 38 1 0 4 1 5 118 45 37 149 1 0 65 0 4 62 0 9 16 0 5 225 chain 22824 chr14 107349540 + 63249286 63249563 AluY 311 + 40 311 116474 263 6 0 8 chain 26021 chr14 107349540 + 63266016 63266323 AluSp 311 + 4 311 99937 87 0 3 207 3 0 10 chain 43041 chr14 107349540 + 63272593 63273136 MER41A 554 + 0 554 65366 184 6 12 21 0 1 187 0 4 145 chain 42247 chr14 107349540 + 63277096 63277658 MER41A 554 + 0 554 66338 460 21 13 81 chain 33082 chr14 107349540 + 63324121 63324586 MLT2A1 477 - 0 477 79078 46 34 49 212 5 2 168 chain 205113 chr14 107349540 + 63324586 63327051 HERVL-int 5654 - 0 2509 18848 44 0 4 107 0 4 35 0 14 10 5 1 68 0 3 83 0 3 52 0 2 338 1 9 768 0 9 6 0 1 948 chain 94239 chr14 107349540 + 63335274 63336383 L1PA7 6471 - 2 1136 38281 115 0 17 635 0 2 75 0 2 148 0 4 136 chain 25469 chr14 107349540 + 63336383 63336670 L1PA7 6471 + 5028 5315 102357 287 chain 2626 chr14 107349540 + 63336691 63336736 MADE1 96 + 46 92 231342 23 5 6 17 chain 15018 chr14 107349540 + 63340968 63341177 L1PA8A 6298 + 5454 5673 140270 8 0 1 26 2 6 23 5 10 145 chain 51663 chr14 107349540 + 63341177 63341756 L1P1 4361 + 3750 4328 57853 184 0 1 216 1 0 154 1 0 23 chain 9930 chr14 107349540 + 63343695 63343813 L1PA3long 6157 - 1249 1364 160517 5 3 0 110 chain 101620 chr14 107349540 + 63343813 63344917 L1PA3long 6157 + 4897 6001 36366 1104 chain 13433 chr14 107349540 + 63344918 63345075 L1PA3long 6157 + 6001 6157 146563 12 1 0 144 chain 23970 chr14 107349540 + 63356671 63357042 L1PA14 3548 + 3132 3485 110513 5 1 0 84 1 0 5 0 1 105 14 9 36 9 7 9 1 0 3 1 0 21 1 0 41 6 0 7 1 0 20 chain 27836 chr14 107349540 + 63366267 63366567 AluYa5 310 + 0 297 93573 97 1 0 35 2 0 165 chain 29663 chr14 107349540 + 63375752 63376062 AluYa5 310 - 0 310 86012 310 chain 43503 chr14 107349540 + 63414547 63415033 L1PA3long 6157 - 0 486 64810 486 chain 91479 chr14 107349540 + 63415033 63416048 L1P1 4361 + 3288 4302 39145 863 1 0 151 chain 22087 chr14 107349540 + 63446614 63446973 THE1D 372 + 0 371 119853 134 52 57 40 11 19 90 1 0 31 chain 18725 chr14 107349540 + 63448819 63449056 AluSc5 308 + 54 290 130892 4 1 0 232 chain 22672 chr14 107349540 + 63464370 63464648 AluY 311 + 37 311 117202 96 2 0 170 2 0 8 chain 40705 chr14 107349540 + 63465702 63466147 L1PA3long 6157 - 447 892 68296 445 chain 40807 chr14 107349540 + 63466147 63466591 L1PA3long 6157 + 5713 6157 68162 444 chain 3983 chr14 107349540 + 63474925 63474991 Arthur1A 176 - 27 93 207647 19 6 5 32 0 1 9 chain 26028 chr14 107349540 + 63527683 63528038 THE1B 368 + 0 368 99903 44 11 26 37 0 1 60 1 0 4 3 2 119 1 0 75 chain 254252 chr14 107349540 + 63533188 63536764 L1PB1 5432 - 9 3692 16017 19 1 0 4 9 8 22 1 0 24 2 0 14 5 6 15 8 0 11 2 0 4 1 0 16 1 0 8 0 1 36 19 18 49 2 0 9 2 0 3 2 0 12 1 0 6 1 0 24 27 122 286 6 8 78 0 1 167 0 4 446 0 9 255 53 16 119 1 2 230 0 7 157 0 2 157 1 0 206 1 0 119 19 41 92 3 8 74 0 1 5 3 0 70 0 5 22 0 14 118 0 3 14 12 11 5 0 1 326 0 2 171 chain 25977 chr14 107349540 + 63546085 63546384 AluY 311 + 0 295 100108 118 4 0 177 chain 250164 chr14 107349540 + 63573097 63576122 L1PA7 6471 - 10 3051 16240 169 0 1 138 0 2 151 14 27 351 2 0 926 2 0 24 0 4 299 0 1 4 1 0 219 0 1 96 0 1 7 0 1 210 2 0 222 0 1 65 1 0 17 1 0 104 chain 567538 chr14 107349540 + 63583424 63589447 L1HS 6032 - 0 6026 57 5347 0 3 676 chain 7018 chr14 107349540 + 63601431 63601647 MER33 330 - 84 302 177334 44 51 52 26 51 52 44 chain 4645 chr14 107349540 + 63604763 63604830 L1PB1 5432 + 5358 5422 199119 12 1 0 21 1 0 13 1 0 18 chain 540721 chr14 107349540 + 63605730 63611835 L1PA5 6144 - 6 6137 2704 140 7 0 555 0 1 216 0 28 1615 0 1 182 0 1 314 0 1 1790 0 1 1286 chain 6684 chr14 107349540 + 63627543 63628132 MER58B 340 - 4 235 179800 24 30 31 32 35 37 38 403 42 27 chain 173847 chr14 107349540 + 63631518 63633548 SVA_D 2077 + 0 2071 21605 31 1 0 185 1 0 680 22 65 25 0 1 29 0 51 124 48 0 27 1 0 128 0 1 4 0 1 36 0 1 84 2 0 459 4 0 139 chain 2637 chr14 107349540 + 63632620 63632664 SVA_D 2077 + 1017 1064 70119 15 0 3 29 chain 23434 chr14 107349540 + 63640040 63640343 AluSg 306 + 4 306 113452 137 3 0 6 4 7 109 1 0 43 chain 115109 chr14 107349540 + 63660819 63662354 THE1C-int 1605 + 0 1605 32754 16 1 2 92 0 54 165 13 19 50 0 1 46 9 16 66 0 1 51 2 7 10 11 3 74 1 2 34 1 0 137 0 1 368 3 2 65 14 17 306 chain 23844 chr14 107349540 + 63662354 63662674 THE1C 375 + 0 325 111224 142 14 18 26 0 1 138 chain 5100 chr14 107349540 + 63674460 63674593 MIR 256 + 77 218 194079 42 59 67 32 chain 27190 chr14 107349540 + 63680025 63680394 L1PA16 3655 - 76 441 95629 70 7 5 213 2 0 77 chain 30140 chr14 107349540 + 63683804 63684134 L1PA2 6032 - 0 330 84348 330 chain 95941 chr14 107349540 + 63688546 63689619 L1PA5 6144 - 1 1075 37836 10 1 3 245 1 0 816 chain 27214 chr14 107349540 + 63733196 63733557 L1PA16 3655 - 1446 1836 95548 30 0 2 129 0 27 18 1 2 96 2 1 85 chain 10153 chr14 107349540 + 63745149 63745259 L1PA7 6471 - 4 114 159833 110 chain 3701 chr14 107349540 + 63764301 63764352 MER5A1 166 + 69 120 211930 10 0 1 36 1 0 4 chain 347016 chr14 107349540 + 63769493 63774725 L1PB1 5432 + 685 5420 11694 295 289 0 52 6 5 13 9 31 211 6 1 72 51 32 13 7 8 131 0 4 123 0 1 192 0 1 118 15 14 495 1 0 83 0 1 172 11 11 38 11 7 79 1 4 199 7 3 41 1 9 338 0 1 119 2 1 122 5 0 10 2 0 306 101 11 244 0 7 281 0 2 28 9 7 63 7 0 128 24 23 211 0 1 5 2 1 50 96 11 24 1 0 9 27 20 52 1 0 18 1 0 41 6 5 13 3 0 15 9 0 14 1 0 3 1 0 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 23858 chr14 107349540 + 63769792 63770077 AluY 311 + 19 302 111137 111 2 0 172 chain 5699 chr14 107349540 + 63773157 63773235 L1PB1 5432 + 983 1060 188120 49 2 1 27 chain 28858 chr14 107349540 + 63787179 63787485 AluYa8 305 + 0 305 89632 297 1 0 8 chain 416774 chr14 107349540 + 63799547 63805272 L1PB1 5432 + 9 5418 9610 4 1 0 6 1 0 144 23 24 262 2 1 94 3 1 14 6 11 81 6 0 160 0 1 348 1 0 137 0 1 110 0 3 261 0 5 65 280 4 115 0 1 112 7 0 372 0 1 159 9 14 39 0 7 134 1 0 141 14 15 301 0 2 41 0 1 334 0 3 155 0 1 42 23 1 33 7 0 191 0 1 212 2 0 447 3 0 470 0 4 8 1 2 9 3 0 24 1 0 9 1 0 10 16 10 53 2 1 15 1 0 44 1 0 9 21 8 30 2 0 5 1 0 10 5 4 24 1 0 22 0 3 9 1 0 14 chain 7213 chr14 107349540 + 63806150 63806257 MSTA 426 - 319 426 175981 36 0 7 6 10 3 55 chain 8818 chr14 107349540 + 63845025 63845151 MER85 139 - 0 137 166566 20 12 23 94 chain 24515 chr14 107349540 + 63849117 63849408 AluSp 311 - 10 301 107474 291 chain 25000 chr14 107349540 + 63858129 63858440 AluSp 311 - 0 311 104786 40 0 1 52 6 5 213 chain 29313 chr14 107349540 + 63887488 63887799 AluYa5 310 + 0 310 87486 132 1 0 178 chain 50308 chr14 107349540 + 63912576 63913264 Tigger1 2417 - 351 1039 58785 200 7 10 158 32 29 291 chain 3503 chr14 107349540 + 63946515 63946594 MADE2 80 - 0 80 215313 17 24 25 38 chain 28895 chr14 107349540 + 63956907 63957450 L1PA17 2846 + 2117 2693 89478 47 1 4 14 2 0 63 1 0 33 43 87 124 14 10 11 1 0 22 2 1 44 31 28 27 1 0 17 1 0 21 4 1 6 0 3 13 chain 3364 chr14 107349540 + 63960075 63960189 MER20 218 - 84 177 217783 20 5 4 19 51 31 19 chain 25831 chr14 107349540 + 63967835 63968143 AluY 311 + 0 303 100740 122 3 0 4 2 0 177 chain 4908 chr14 107349540 + 63972750 63972865 L1MB8 1703 + 782 899 196179 5 2 0 25 13 19 37 13 11 20 chain 5969 chr14 107349540 + 63985550 63985616 MER41B 635 + 481 547 185525 66 chain 151270 chr14 107349540 + 63988689 63990445 SVA_D 2077 + 62 2069 24435 703 3 0 8 19 19 6 0 3 110 10 47 28 1 0 48 2 4 17 0 127 121 0 98 657 12 0 11 chain 18410 chr14 107349540 + 63997912 63998123 L1PA4 6152 - 59 269 131748 97 1 0 113 chain 6732 chr14 107349540 + 63998123 63998195 L1PA4 6152 + 6079 6151 179453 72 chain 19839 chr14 107349540 + 64007190 64007454 AluSp 311 + 24 296 127682 9 0 16 71 8 0 12 1 0 85 0 1 78 chain 24720 chr14 107349540 + 64016068 64016361 AluY 311 + 0 289 106327 126 0 1 12 5 0 150 chain 4581 chr14 107349540 + 64027615 64027665 MSTA 426 + 376 426 199850 50 chain 2156 chr14 107349540 + 64031875 64031898 L1PB1 5432 + 5370 5393 237086 23 chain 5075 chr14 107349540 + 64043860 64043927 MSTD 398 + 0 68 194347 27 2 3 38 chain 26914 chr14 107349540 + 64052825 64053128 AluSp 311 - 8 311 96580 303 chain 22611 chr14 107349540 + 64053725 64054009 AluSp 311 - 23 300 117532 156 6 0 30 1 0 91 chain 8666 chr14 107349540 + 64072975 64073129 Tigger3b 1229 + 538 687 167395 28 18 0 10 1 12 29 2 4 66 chain 192199 chr14 107349540 + 64101745 64104660 L1PB1 5432 + 2855 5424 19850 36 0 3 36 11 15 398 0 1 382 16 11 9 284 0 70 4 8 447 2 1 83 0 2 175 1 2 75 0 4 19 5 1 294 1 0 39 1 0 15 0 3 119 43 0 11 1 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 20 13 5 1 0 13 24 19 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 4151 chr14 107349540 + 64106106 64106155 MER41E 591 + 403 452 205233 49 chain 7084 chr14 107349540 + 64113431 64113645 LTR56 451 + 31 261 176864 34 117 133 63 chain 6648 chr14 107349540 + 64115391 64115484 LTR8 732 - 467 561 180106 69 5 6 19 chain 23047 chr14 107349540 + 64124831 64125112 AluSc 308 - 17 296 115412 5 2 0 274 chain 5554 chr14 107349540 + 64125837 64125904 U3 216 + 1 68 189523 67 chain 7887 chr14 107349540 + 64129385 64129481 LTR32 486 - 217 313 171753 96 chain 19658 chr14 107349540 + 64133470 64133718 AluSp 311 + 18 265 128227 150 7 6 91 chain 19317 chr14 107349540 + 64147980 64148339 THE1C 375 + 0 375 129190 14 2 0 33 0 6 11 28 30 15 4 5 65 31 27 19 4 17 133 chain 12593 chr14 107349540 + 64174253 64174452 AluSp 311 - 12 166 149866 114 45 0 40 chain 2663 chr14 107349540 + 64180228 64180280 Ricksha_b 1102 - 15 52 230880 9 15 0 28 chain 25156 chr14 107349540 + 64196029 64196317 AluSp 311 + 11 300 103978 165 0 1 123 chain 12175 chr14 107349540 + 64207606 64207777 L1PA16 3655 - 77 253 151516 81 1 0 5 1 0 4 1 7 14 0 1 64 chain 3819 chr14 107349540 + 64212477 64212521 MER2 342 - 0 44 210097 44 chain 106853 chr14 107349540 + 64217558 64218821 SVA_C 1631 - 422 1631 35016 25 2 1 140 1 0 39 2 1 93 1 0 46 1 0 7 51 0 136 3 0 700 0 5 16 chain 13492 chr14 107349540 + 64231296 64231503 L1PA8 5853 - 0 203 146379 92 2 1 19 2 1 38 2 0 6 0 2 5 1 0 10 2 1 28 chain 33192 chr14 107349540 + 64261822 64262294 MLT2A1 477 + 0 477 78900 169 5 2 184 22 8 22 4 0 17 15 35 27 0 6 7 chain 23112 chr14 107349540 + 64268109 64268402 AluSp 311 + 2 292 115080 83 8 0 143 0 5 59 chain 7235 chr14 107349540 + 64269327 64269428 LTR12C 1709 - 0 232 175864 69 2 133 30 chain 4911 chr14 107349540 + 64269458 64269515 LTR12E 1234 - 125 183 196150 38 0 1 19 chain 9728 chr14 107349540 + 64270974 64271192 L1P4 1494 - 84 305 161945 20 42 43 96 32 34 28 chain 89473 chr14 107349540 + 64278335 64279478 MER11A 1151 - 0 1151 39817 74 1 5 100 0 1 82 0 1 26 3 0 28 0 1 19 10 9 477 0 2 24 1 0 6 0 2 63 0 4 28 2 0 21 8 0 84 7 15 79 chain 7392 chr14 107349540 + 64279529 64279614 L1PA8 5853 + 5767 5852 174816 85 chain 3994 chr14 107349540 + 64281053 64281099 MLT2A2 560 - 0 46 207480 46 chain 2993 chr14 107349540 + 64296197 64296232 L1MB8 1703 + 1223 1258 225144 35 chain 8876 chr14 107349540 + 64314979 64315080 HY3 101 - 0 101 166253 101 chain 3026 chr14 107349540 + 64331745 64331794 MIR 256 + 84 134 224441 25 5 6 19 chain 3026 chr14 107349540 + 64337352 64337401 MIR 256 - 122 172 224442 19 5 6 25 chain 5708 chr14 107349540 + 64393027 64393100 L1MB8 1703 - 164 237 188029 73 chain 16564 chr14 107349540 + 64394098 64394757 THE1B 368 + 1 368 136756 44 1 2 53 25 26 48 0 2 6 355 60 64 27 26 36 chain 22758 chr14 107349540 + 64398833 64399127 AluSq2 311 + 21 311 116795 18 0 1 20 5 0 51 1 0 22 0 1 177 chain 6197 chr14 107349540 + 64420795 64420870 L1MB3 1562 - 285 361 183604 35 0 1 40 chain 7210 chr14 107349540 + 64423393 64423524 MER2 342 + 53 178 175996 16 0 2 7 12 15 22 0 1 26 12 0 36 chain 14626 chr14 107349540 + 64425475 64425849 L1MC3 1789 - 387 698 142500 11 8 0 16 1 0 36 93 60 17 48 27 144 chain 5254 chr14 107349540 + 64480259 64480345 L1PB4 2604 - 68 160 192473 34 11 17 41 chain 9825 chr14 107349540 + 64486951 64487086 MER30 238 - 0 181 161471 80 5 51 50 chain 154587 chr14 107349540 + 64503851 64505606 SVA_D 2077 - 1 2071 24033 587 0 270 176 0 1 4 2 4 43 0 83 279 40 0 359 1 0 264 chain 6700 chr14 107349540 + 64522483 64522557 L1PA3long 6157 + 6083 6157 179693 74 chain 21669 chr14 107349540 + 64548573 64548818 AluY 311 + 51 297 121502 81 0 1 164 chain 34588 chr14 107349540 + 64566655 64567030 L1PA3long 6157 + 5604 5979 76773 375 chain 131721 chr14 107349540 + 64649126 64650685 SVA_C 1631 - 20 1623 27693 332 0 3 232 0 41 47 0 1 30 0 1 8 14 19 18 0 1 8 2 0 5 10 13 797 0 1 30 11 1 15 chain 21027 chr14 107349540 + 64719185 64719559 THE1D 372 - 0 372 123825 130 71 66 18 12 13 62 0 1 54 1 2 26 chain 33446 chr14 107349540 + 64745503 64746068 MER4B 649 + 0 619 78496 8 1 0 22 1 0 113 3 1 12 1 43 126 16 31 44 55 56 96 0 1 11 11 10 45 chain 18750 chr14 107349540 + 64779191 64779426 LTR19B 566 - 0 242 130825 28 1 3 22 0 1 156 0 4 28 chain 3602 chr14 107349540 + 64787648 64787753 L1MC2 1988 + 1864 1973 213614 32 30 35 15 8 7 20 chain 12165 chr14 107349540 + 64788467 64788624 L1PA16 3655 + 3429 3583 151557 149 3 0 5 chain 22291 chr14 107349540 + 64806411 64806695 AluSp 311 - 27 310 118945 29 0 1 80 13 12 137 1 0 24 chain 20592 chr14 107349540 + 64806930 64807210 AluSp 311 + 14 290 125325 70 3 1 47 12 10 148 chain 13687 chr14 107349540 + 64839637 64839823 MSTA-int 1630 - 8 193 145643 48 0 1 15 1 0 44 4 3 74 chain 40263 chr14 107349540 + 64878107 64878979 PRIMA4_LTR 623 - 22 623 68925 46 7 9 85 1 2 41 1 0 4 1 2 26 0 2 12 305 0 116 0 28 35 4 5 73 1 2 21 1 0 92 chain 25087 chr14 107349540 + 64908247 64908538 AluY 311 + 5 300 104365 127 0 1 55 0 3 109 chain 23757 chr14 107349540 + 64952757 64953030 AluY 311 + 22 293 111724 101 2 0 170 chain 24339 chr14 107349540 + 64966020 64966313 AluSp 311 + 10 311 108427 10 0 8 283 chain 4526 chr14 107349540 + 64977014 64977069 MIR 256 - 169 224 200486 55 chain 5441 chr14 107349540 + 65002621 65002754 THE1B 368 + 195 346 190600 5 1 0 14 20 39 49 19 17 13 0 2 12 chain 24905 chr14 107349540 + 65069257 65069553 AluSq 315 + 0 296 105312 296 chain 26334 chr14 107349540 + 65092970 65093341 THE1C 375 + 7 375 98680 118 8 5 38 0 1 6 0 1 5 3 0 22 8 11 44 1 0 91 1 0 26 chain 22408 chr14 107349540 + 65094138 65094470 THE1D 372 + 0 333 118454 76 16 1 7 4 0 20 0 1 17 1 11 57 0 3 45 2 8 87 chain 30031 chr14 107349540 + 65099614 65099930 AluYb8 318 - 2 318 84720 316 chain 42390 chr14 107349540 + 65105813 65106362 MER41A 554 - 0 554 66163 73 28 28 419 0 5 29 chain 43700 chr14 107349540 + 65111420 65111971 MER41A 554 + 0 554 64568 92 0 1 9 0 1 219 0 1 46 5 4 87 0 1 93 chain 107677 chr14 107349540 + 65124713 65126092 LTR12C 1709 + 0 1709 34806 256 2 1 31 0 13 37 0 43 82 0 2 4 1 0 19 19 12 79 0 2 69 0 278 184 1 0 6 2 0 106 0 4 26 0 1 91 0 2 204 7 6 62 7 5 84 chain 16336 chr14 107349540 + 65130249 65130477 Tigger3b 1229 - 22 246 137380 21 11 7 196 chain 11540 chr14 107349540 + 65236716 65236861 L1MB8 1703 + 1435 1580 154143 145 chain 45348 chr14 107349540 + 65246963 65247999 L1PA14 3548 + 2755 3456 62658 55 1 0 109 331 20 14 2 0 47 2 0 5 11 9 100 4 0 17 2 0 6 1 0 84 1 0 4 1 2 104 1 0 12 5 1 34 4 2 13 5 3 18 1 0 42 chain 47086 chr14 107349540 + 65327457 65328027 L1PA8A 6298 + 5701 6291 61135 236 3 22 216 3 4 112 chain 7138 chr14 107349540 + 65329926 65330033 MER30 238 - 0 110 176487 29 14 17 64 chain 6622 chr14 107349540 + 65356730 65356806 MSTD 398 - 322 398 180287 76 chain 174695 chr14 107349540 + 65360861 65363373 SVA_E 1901 - 0 1886 21514 942 2 1 31 3 0 110 621 0 664 1 0 138 chain 1955 chr14 107349540 + 65361949 65361979 SVA_E 1901 - 912 942 117824 30 chain 2473 chr14 107349540 + 65361980 65362008 SVA_E 1901 - 640 668 189444 28 chain 6088 chr14 107349540 + 65362034 65362097 SVA_E 1901 - 1021 1084 184511 63 chain 28885 chr14 107349540 + 65362150 65362514 SVA_F 1814 - 540 1145 89511 97 0 1 162 6 13 32 0 193 25 6 46 36 chain 45687 chr14 107349540 + 65380023 65380539 L1PA5 6144 - 13 529 62327 516 chain 27753 chr14 107349540 + 65401749 65402062 L1PA3long 6157 + 5844 6157 93857 313 chain 5440 chr14 107349540 + 65422770 65422838 MER5A 189 + 5 75 190606 14 0 1 33 0 1 21 chain 24956 chr14 107349540 + 65440955 65441243 AluY 311 + 7 302 105023 69 0 6 50 0 1 169 chain 75826 chr14 107349540 + 65445305 65446273 LTR5_Hs 974 - 0 974 45586 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 27226 chr14 107349540 + 65467111 65467862 LTR23 429 - 24 428 95510 126 362 2 57 1 12 105 13 14 14 2 3 71 chain 3664 chr14 107349540 + 65467870 65467920 MER2 342 + 166 213 212496 12 3 0 35 chain 7777 chr14 107349540 + 65506375 65506471 MSTB1 431 - 0 96 172433 96 chain 30305 chr14 107349540 + 65510258 65510576 AluYb8 318 + 0 318 83893 318 chain 25909 chr14 107349540 + 65527157 65527441 AluYa5 310 + 25 304 100385 247 2 0 27 3 0 5 chain 120843 chr14 107349540 + 65552977 65554537 THE1B-int 1605 + 0 1598 30744 412 0 1 4 1 0 15 0 25 456 3 0 113 5 7 71 5 1 242 0 1 181 0 17 52 chain 27889 chr14 107349540 + 65554544 65554907 THE1B 368 + 0 368 93399 55 0 9 108 3 2 26 2 0 48 0 1 20 2 0 99 chain 8231 chr14 107349540 + 65581547 65581664 LTR47A 437 + 0 140 169776 90 5 28 22 chain 11157 chr14 107349540 + 65591086 65591247 U2 167 - 3 158 155606 22 5 1 11 3 1 120 chain 7800 chr14 107349540 + 65597778 65597875 THE1D 372 - 233 330 172310 97 chain 12050 chr14 107349540 + 65597927 65598096 MER1B 344 - 78 308 151982 46 0 46 84 12 27 27 chain 90464 chr14 107349540 + 65613056 65614144 MER11B 1079 - 0 1079 39479 24 1 2 287 6 0 171 9 8 323 3 0 241 2 1 4 0 1 17 chain 3721 chr14 107349540 + 65619447 65619508 MIR 256 - 129 191 211617 30 11 12 20 chain 81378 chr14 107349540 + 65645381 65646428 MER11C 1089 - 26 1089 43017 143 1 0 54 0 1 89 0 1 37 0 1 35 1 0 10 0 4 112 45 44 147 1 0 64 0 4 61 0 9 247 chain 19688 chr14 107349540 + 65659806 65660512 THE1C 375 + 0 374 128136 17 2 0 29 38 45 17 10 9 18 0 4 46 17 13 25 338 0 127 1 0 8 0 3 13 chain 51120 chr14 107349540 + 65664177 65664927 L1MA2 4263 - 123 879 58237 18 3 0 7 4 2 8 1 0 37 18 11 26 0 4 61 1 0 9 2 1 150 18 24 117 0 16 60 9 5 17 1 0 183 chain 54586 chr14 107349540 + 65669492 65670162 LTR12_ 688 + 0 670 55978 25 1 0 166 0 5 234 4 0 240 chain 12458 chr14 107349540 + 65674058 65674215 LTR8 732 - 0 160 150426 121 0 3 36 chain 58005 chr14 107349540 + 65700294 65701160 L1MA2 4263 - 163 1014 53970 28 21 14 82 1 2 8 1 0 9 2 1 150 21 18 126 1 0 28 0 2 46 8 5 10 1 0 5 1 0 207 6 5 4 0 1 100 chain 24073 chr14 107349540 + 65739050 65739332 AluSp 311 - 18 300 109911 282 chain 17156 chr14 107349540 + 65767759 65767990 MER30 238 + 0 230 135150 103 12 14 82 3 0 31 chain 20732 chr14 107349540 + 65795725 65796020 MER4B 649 - 16 326 124844 71 1 0 9 4 1 112 13 17 67 0 15 18 chain 10920 chr14 107349540 + 65802678 65802808 L1PA7 6471 - 19 149 156526 130 chain 42546 chr14 107349540 + 65832114 65832841 MER41A 554 + 0 554 65967 193 0 1 228 0 1 18 186 6 19 0 5 83 chain 25649 chr14 107349540 + 65846802 65847120 THE1A 353 - 19 346 101500 132 1 0 24 0 11 57 2 1 102 chain 24696 chr14 107349540 + 65851613 65851916 AluSp 311 - 16 311 106459 167 8 0 128 chain 11078 chr14 107349540 + 65860983 65861153 THE1B 368 - 191 362 155902 42 31 32 97 chain 25253 chr14 107349540 + 65861164 65861468 THE1B-int 1605 - 5 310 103466 196 4 5 104 chain 3147 chr14 107349540 + 65873032 65873065 MIRb 242 - 135 168 221992 33 chain 7422 chr14 107349540 + 65873086 65873202 LTR45B 484 - 31 141 174642 12 7 0 52 4 5 41 chain 5380 chr14 107349540 + 65917503 65917568 LTR1D 973 - 0 65 191198 65 chain 34307 chr14 107349540 + 65924194 65924970 LTR2B 499 - 0 490 77198 183 1 0 7 0 1 72 11 21 92 0 19 39 2 0 7 314 0 44 0 1 4 chain 10641 chr14 107349540 + 65961326 65961460 L1PA8 5853 - 0 132 157647 93 1 0 19 2 1 19 chain 10721 chr14 107349540 + 65978725 65978864 Tigger3a 397 - 109 258 157319 127 1 11 11 chain 9407 chr14 107349540 + 65981425 65981536 L1PA2 6032 - 2 113 163522 111 chain 535686 chr14 107349540 + 65989304 65995405 L1PA5 6144 - 12 6141 3491 446 1 0 600 0 1 233 0 1 1152 0 11 543 0 2 1716 2 1 271 0 1 52 0 14 781 1 0 52 5 6 246 chain 5580 chr14 107349540 + 66018189 66018403 L1MA10 1535 + 1314 1498 189280 61 128 98 25 chain 21491 chr14 107349540 + 66024054 66024333 AluSg7 307 - 13 292 122176 151 11 12 22 1 0 94 chain 13588 chr14 107349540 + 66045180 66045385 MER30 238 + 0 238 146022 14 1 15 75 11 27 21 0 6 41 4 1 38 chain 11938 chr14 107349540 + 66046808 66047067 Tigger3a 397 - 2 258 152451 16 4 5 4 1 0 26 38 19 15 13 26 102 1 0 13 6 0 11 0 10 9 chain 98520 chr14 107349540 + 66068858 66070407 L1PB1 5432 - 132 2904 37148 4 1 0 14 13 12 34 1 0 15 2 1 50 129 71 36 0 5 395 1 0 40 1 2 7 0 18 30 17 16 23 0 2 60 4 10 23 0 14 38 1 0 18 2 1 76 0 6 199 1 0 69 1 0 55 1 0 59 38 1279 86 1 0 4 chain 81552 chr14 107349540 + 66070407 66071526 L1PB1 5432 + 1385 2517 42860 11 0 3 163 0 9 114 0 5 23 0 23 18 38 10 97 12 17 279 0 1 79 0 1 29 0 3 5 12 9 129 6 0 104 chain 224109 chr14 107349540 + 66098820 66103403 L1PB1 5432 - 329 3296 17647 50 19 19 40 16 18 64 0 1 35 0 1 54 1 0 116 0 2 81 7 12 383 1617 0 20 0 9 39 10 4 434 17 10 56 2 0 55 2 3 107 0 4 155 0 4 318 6 5 116 1 0 46 4 0 347 6 0 359 chain 140682 chr14 107349540 + 66099699 66101297 SVA_D 2077 + 12 2077 26040 4 1 0 6 1 0 9 13 0 427 0 39 411 1 0 8 4 395 34 0 2 3 0 50 44 0 1 4 0 1 609 1 0 18 chain 3016 chr14 107349540 + 66119782 66119815 MLT1G 592 - 427 460 224691 33 chain 37352 chr14 107349540 + 66123944 66124591 L1MA3 4352 + 3630 4278 73027 85 0 1 4 1 0 14 0 5 124 10 8 164 1 0 57 106 91 51 10 24 20 chain 2847 chr14 107349540 + 66126278 66126308 U2 167 - 136 166 227878 30 chain 7167 chr14 107349540 + 66146719 66146978 MLT2B1 522 - 0 252 176292 47 68 60 49 75 76 20 chain 164461 chr14 107349540 + 66158341 66160279 SVA_D 2077 - 21 2064 22749 514 0 225 279 0 2 89 14 0 30 3 1 13 3 0 15 87 0 777 8 0 86 8 0 12 chain 2302 chr14 107349540 + 66159301 66159340 SVA_D 2077 - 1057 1098 81517 32 0 2 7 chain 48215 chr14 107349540 + 66161234 66161768 L1PA3long 6157 + 5620 6156 60307 529 0 2 5 chain 5839 chr14 107349540 + 66183015 66183099 L1M1 2793 - 98 179 186772 10 1 0 12 1 0 45 1 0 14 chain 104835 chr14 107349540 + 66183163 66184535 SVA_A 1864 - 215 1434 35541 505 1 0 157 2 0 100 1 0 84 2 0 18 37 0 20 110 0 38 2 0 37 2 0 111 0 2 114 0 2 31 chain 2960 chr14 107349540 + 66184033 66184070 SVA_A 1864 - 1305 1345 53317 20 0 3 17 chain 8800 chr14 107349540 + 66184090 66184200 SVA_A 1864 - 1365 1439 53317 5 37 0 11 1 0 19 10 12 27 chain 1945 chr14 107349540 + 66184095 66184132 SVA_A 1864 - 1143 1180 122896 37 chain 122357 chr14 107349540 + 66193384 66194964 THE1B-int 1605 - 0 1605 30264 73 3 2 747 7 5 215 7 6 100 0 25 300 0 2 112 4 6 12 chain 15503 chr14 107349540 + 66194964 66195210 THE1B 368 - 0 255 139882 126 34 44 24 3 2 59 chain 12351 chr14 107349540 + 66208142 66208284 L1PA4 6152 + 5999 6141 150826 142 chain 16027 chr14 107349540 + 66214013 66214317 L1PB3 3668 + 3297 3581 138285 86 23 27 68 22 6 10 1 0 9 2 1 24 3 1 34 10 6 12 chain 13740 chr14 107349540 + 66227844 66228019 L1PA10 4194 - 57 230 145469 21 3 0 139 0 1 12 chain 36080 chr14 107349540 + 66235117 66235730 L1PA15 4387 - 71 680 74785 46 17 14 39 1 0 6 11 7 19 2 1 54 1 0 26 9 8 44 3 6 113 1 0 41 3 1 58 4 0 13 14 16 39 1 10 48 chain 36856 chr14 107349540 + 66241425 66241822 L1PA3long 6157 + 5760 6157 73726 397 chain 2584 chr14 107349540 + 66260406 66260445 MLT1I 406 - 64 101 231856 5 3 0 26 0 1 5 chain 23257 chr14 107349540 + 66296912 66297267 THE1A 353 + 0 353 114408 15 2 0 32 17 18 25 4 4 17 0 2 6 17 15 68 1 0 151 chain 28143 chr14 107349540 + 66315357 66315671 AluYb8 318 + 0 301 92488 293 13 0 8 chain 490693 chr14 107349540 + 66321592 66327004 L1PA3long 6157 - 5 5431 7332 133 0 7 2744 0 4 2072 0 3 463 chain 15655 chr14 107349540 + 66327004 66327190 L1HS 6032 + 15 725 138128 81 0 524 105 chain 190960 chr14 107349540 + 66340576 66343339 L1PA13 3608 - 894 3515 19960 16 0 1 218 0 1 236 0 1 176 0 1 122 1 0 3 2 0 4 0 1 14 16 17 154 0 1 4 1 0 141 0 1 204 0 5 401 0 1 74 0 1 183 6 11 67 39 0 4 84 0 20 2 0 46 0 1 69 4 2 10 1 0 7 1 0 15 1 0 19 7 2 5 0 1 9 2 0 17 1 0 12 1 0 27 1 2 96 17 15 47 39 28 22 19 15 25 1 0 3 2 0 23 6 4 16 chain 503871 chr14 107349540 + 66358835 66365208 L1PA6 6164 + 38 6160 6613 78 0 3 46 1 20 196 0 2 65 9 1 118 1 0 231 1 18 256 8 7 7 0 3 45 2 1 582 0 1 613 0 3 183 0 1 64 1 8 504 0 1 159 0 6 372 304 0 482 0 2 172 12 14 1010 0 4 515 0 1 14 4 0 55 0 1 97 5 6 148 6 0 7 chain 64327 chr14 107349540 + 66391590 66392372 LTR17 781 - 0 781 50872 12 0 1 403 0 7 30 0 1 18 10 0 25 0 1 4 1 0 279 chain 2929 chr14 107349540 + 66405694 66405725 MER6B 211 + 29 60 226526 31 chain 35613 chr14 107349540 + 66423597 66424073 LTR2B 499 - 0 490 75397 182 1 0 8 0 1 14 0 2 161 1 20 46 11 5 46 1 0 5 chain 30303 chr14 107349540 + 66444457 66444829 MLT2A1 477 + 0 371 83908 169 4 1 12 0 1 21 0 1 166 chain 20714 chr14 107349540 + 66445124 66445475 THE1B 368 + 0 368 124920 15 3 1 24 0 5 124 1 0 6 4 3 14 56 72 104 chain 126826 chr14 107349540 + 66445475 66447052 THE1B-int 1605 + 0 1605 28852 424 6 27 24 4 5 135 10 6 35 0 8 554 0 2 385 chain 14427 chr14 107349540 + 66466592 66466804 LTR76 689 + 7 682 143129 18 0 1 9 3 14 80 1 0 32 0 453 33 5 4 31 chain 538068 chr14 107349540 + 66493172 66499333 L1PA4 6152 - 5 6151 3142 77 0 1 48 0 12 449 0 1 4 10 12 672 2 1 2316 17 1 282 0 1 1033 0 1 221 0 1 105 0 8 67 17 0 258 1 0 446 0 1 104 13 5 19 chain 40630 chr14 107349540 + 66501270 66501796 MLT2A2 560 + 23 560 68399 142 0 1 15 1 0 219 5 16 144 chain 20355 chr14 107349540 + 66508564 66508797 L1PA5 6144 + 5891 6124 126047 98 1 0 12 0 1 122 chain 27270 chr14 107349540 + 66521420 66521775 THE1B 368 + 0 366 95371 44 0 15 116 1 0 25 2 0 106 4 3 57 chain 71642 chr14 107349540 + 66528797 66529587 L1PA4 6152 + 5360 6152 47631 521 0 2 269 chain 44547 chr14 107349540 + 66550736 66551511 L1PB1 5432 + 4667 5417 63528 112 1 0 28 0 8 288 13 11 24 1 0 4 3 2 12 18 12 52 23 21 40 1 0 14 104 87 10 1 0 12 1 0 13 chain 5562 chr14 107349540 + 66557839 66558171 L1MC4a 1092 - 86 482 189461 4 1 0 46 242 307 39 chain 479888 chr14 107349540 + 66610197 66616957 L1PA8A 6298 + 36 6291 7732 4 1 0 16 1 0 11 21 10 26 3 0 14 2 0 5 1 0 6 3 0 4 2 0 17 1 0 8 24 21 11 2 0 6 0 2 7 7 4 13 1 0 8 2 1 11 24 17 8 2 0 36 14 11 15 8 0 34 0 1 44 3 1 9 6 5 10 7 5 78 1 0 177 1 2 114 4 0 274 5 9 171 0 1 135 1 2 216 6 5 9 0 3 53 6 10 234 504 0 28 6 9 429 3 0 112 1 0 61 1 0 23 3 8 24 1 13 467 0 1 251 0 43 143 2 0 140 0 4 10 17 18 149 11 10 662 0 1 289 5 4 120 22 0 540 0 3 46 0 1 554 1 4 51 7 8 22 13 14 99 chain 36007 chr14 107349540 + 66612159 66612637 MER9a3 513 + 15 506 74885 96 0 1 17 1 14 113 1 0 155 2 1 21 2 3 70 chain 14533 chr14 107349540 + 66633147 66633348 THE1C 375 - 168 375 142793 20 5 7 37 1 5 138 chain 6366 chr14 107349540 + 66644246 66644343 HY1 111 - 0 100 182273 35 0 1 27 9 11 26 chain 536109 chr14 107349540 + 66650454 66656585 L1PA5 6144 - 3 6141 3429 2561 0 1 20 0 1 394 0 1 423 0 3 60 0 1 1237 7 6 960 0 1 469 chain 489957 chr14 107349540 + 66667717 66673320 L1PA4 6152 + 3 6138 7367 93 0 525 162 0 1 2381 0 1 399 0 1 20 0 1 1189 3 2 1039 0 3 71 0 1 246 chain 29007 chr14 107349540 + 66690047 66690434 MER61B 427 - 29 427 88954 94 1 12 33 7 8 228 1 0 23 chain 6472 chr14 107349540 + 66692455 66692668 MER34B 572 + 446 572 181463 27 0 2 18 115 26 53 chain 3516 chr14 107349540 + 66708590 66708628 tRNA-Gly-GGA 38 + 0 38 215138 38 chain 88255 chr14 107349540 + 66723167 66724762 HSMAR1 1287 - 38 1285 40280 222 0 2 95 11 14 42 7 19 89 3 0 3 11 0 18 0 2 22 0 1 8 1 0 31 3 13 8 10 0 79 0 15 5 0 42 394 1 0 36 409 0 87 chain 25702 chr14 107349540 + 66724300 66724663 L1PA8 5853 - 1 356 101279 83 10 9 19 2 1 52 2 1 5 1 0 72 2 0 48 1 0 31 1 0 34 chain 92672 chr14 107349540 + 66744612 66745686 L1PA6 6164 + 5088 6161 38762 52 1 0 1021 chain 3807 chr14 107349540 + 66746448 66746513 MLT1G1 539 + 243 304 210282 41 7 4 4 1 0 12 chain 129540 chr14 107349540 + 66755914 66757339 L1PA3long 6157 + 4728 6153 28194 1425 chain 407394 chr14 107349540 + 66762517 66767329 L1PA6 6164 + 0 6159 9866 518 0 2 47 1 0 519 0 19 341 1 0 92 10 4 84 0 1 133 0 1 28 0 1323 77 0 1 847 0 1 321 1 9 940 1 0 96 1 0 599 1 2 154 chain 10527 chr14 107349540 + 66769268 66769386 L1PA3long 6157 + 6039 6157 158143 118 chain 12785 chr14 107349540 + 66786794 66786965 L1MA5 2750 + 1316 1554 149113 120 0 1 42 0 66 9 chain 454021 chr14 107349540 + 66800059 66805642 L1PA7 6471 + 903 6457 8613 263 13 7 586 1 0 32 6 14 222 0 1 613 1 0 108 4 13 10 38 5 323 0 4 387 1 0 6 1 2 82 1 0 40 9 1 552 0 4 65 0 1 191 1 0 174 0 1 203 0 4 235 0 5 18 31 12 280 1 0 247 0 6 511 1 0 326 chain 3859 chr14 107349540 + 66806237 66806297 Charlie10b 242 + 95 156 209466 27 4 5 29 chain 28801 chr14 107349540 + 66810638 66810941 AluYa5 310 - 7 310 89897 303 chain 5369 chr14 107349540 + 66839558 66839736 MLT2B3 573 + 370 573 191330 16 10 11 13 60 72 10 1 0 16 6 19 46 chain 4881 chr14 107349540 + 66844670 66844776 MER104 178 + 29 137 196477 22 28 31 29 1 0 26 chain 4275 chr14 107349540 + 66863272 66863317 L1PA4 6152 + 4712 4757 203536 45 chain 125523 chr14 107349540 + 66863317 66864709 L1PA4 6152 + 4758 6151 29235 536 0 1 856 chain 5706 chr14 107349540 + 66873696 66873840 LTR33A_ 513 + 350 495 188055 16 63 64 65 chain 7777 chr14 107349540 + 66888319 66888463 MER53 195 + 0 195 172432 27 40 91 77 chain 9423 chr14 107349540 + 66908056 66908217 L1MA10 1535 + 1035 1194 163438 12 6 5 101 21 20 21 chain 107105 chr14 107349540 + 66922121 66923663 L1MA3 4352 + 1890 3423 34942 72 0 2 46 0 1 32 4 1 14 9 10 105 0 1 77 0 4 58 1 0 20 9 0 151 25 20 9 6 1 41 2 1 34 1 0 440 15 16 70 0 1 92 4 3 145 0 9 21 3 0 36 chain 30903 chr14 107349540 + 66923663 66924083 MLT2A1 477 + 0 466 82680 137 0 1 2 0 1 28 0 4 103 7 6 42 1 0 66 1 43 33 chain 3347 chr14 107349540 + 66927494 66927555 MADE2 80 + 8 77 218094 16 1 11 13 3 1 28 chain 24131 chr14 107349540 + 66929388 66929720 AluY 311 + 1 311 109581 125 7 0 103 25 10 72 chain 35583 chr14 107349540 + 66932230 66932678 MER4A1 472 + 0 472 75432 14 0 2 154 0 1 55 5 26 220 chain 15116 chr14 107349540 + 66934960 66935195 LTR8 732 - 463 727 140997 24 31 50 154 0 9 16 0 1 10 chain 185531 chr14 107349540 + 66935744 66938281 MER4-int 2692 + 74 2680 20461 7 1 0 9 0 1 8 2 0 5 5 6 34 21 22 139 0 3 36 4 6 62 0 5 112 10 19 175 0 2 33 0 22 532 2 0 16 2 0 114 0 1 8 0 2 20 0 2 127 2 3 35 0 2 5 1 0 105 0 1 28 0 11 98 7 9 242 12 13 35 1 2 25 1 2 52 5 7 82 0 2 193 5 7 119 chain 34647 chr14 107349540 + 66938303 66938748 MER4A1 472 + 2 472 76694 12 0 2 48 0 1 170 6 27 73 0 1 136 chain 147619 chr14 107349540 + 66940623 66942286 L1PA4 6152 + 4478 6141 24935 1535 1 0 25 0 1 102 chain 516720 chr14 107349540 + 66991223 66997636 L1PA7 6471 - 7 6471 5515 333 1 0 272 0 3 232 0 3 401 0 7 228 0 1 35 6 1 75 9 14 179 1 5 172 0 2 80 0 1 141 0 3 82 16 17 360 0 4 200 2 14 76 7 1 25 8 7 381 0 1 281 0 2 81 0 1 93 9 11 378 0 2 71 4 1 110 0 1 269 2 0 46 0 2 220 0 1 527 0 18 26 0 3 282 3 4 275 12 0 48 0 1 354 chain 171787 chr14 107349540 + 67011299 67013541 SVA_D 2077 - 2 2077 21847 10 10 0 426 0 10 223 0 98 76 49 0 194 0 2 88 45 5 25 2 0 15 2 0 19 6 5 28 132 0 274 40 0 298 1 0 279 chain 3681 chr14 107349540 + 67012044 67012093 SVA_D 2077 - 1021 1072 80222 18 0 2 31 chain 4210 chr14 107349540 + 67012375 67012420 SVA_D 2077 - 775 820 82732 45 chain 9542 chr14 107349540 + 67012517 67012619 SVA_D 2077 - 917 1019 82732 102 chain 3075 chr14 107349540 + 67013547 67013583 MER51A 677 + 357 393 223449 36 chain 242070 chr14 107349540 + 67025457 67028153 L1PA3long 6157 - 0 2697 16668 368 2 1 1468 1 0 621 0 1 155 0 2 81 chain 4543 chr14 107349540 + 67029642 67029695 MER34A1 583 - 520 573 200313 53 chain 23782 chr14 107349540 + 67037751 67038120 THE1D 372 - 0 372 111584 117 1 0 43 0 3 12 28 31 86 10 0 6 0 10 13 1 0 47 1 0 4 chain 392300 chr14 107349540 + 67049105 67053464 L1PA4 6152 - 1 4362 10385 7 0 1 1829 1 0 2060 0 2 462 chain 440499 chr14 107349540 + 67054479 67060029 L1PA7 6471 + 824 6470 9041 532 0 1 162 0 1 18 0 1 94 7 9 130 2 6 674 8 6 100 6 93 44 3 0 18 31 0 35 0 3 298 1 2 47 1 5 149 13 15 122 0 1 72 0 14 37 0 1 36 4 8 34 14 15 428 2 0 220 3 4 470 6 7 329 1 0 128 0 4 456 0 1 49 0 1 191 5 7 234 1 2 254 9 5 59 1 2 12 chain 2611 chr14 107349540 + 67062710 67062765 MER52A 1651 - 737 789 231556 23 16 13 16 chain 143948 chr14 107349540 + 67081485 67083431 L1PA8A 6298 - 7 5474 25485 98 10 0 5 0 10 91 0 1 146 0 4 363 10 2 78 1 4 264 5 1 73 0 1 34 1 2 123 0 6 46 16 24 87 1 5 69 0 3496 69 0 1 33 3 31 20 0 10 7 37 5 170 0 1 67 0 1 19 chain 25344 chr14 107349540 + 67087398 67087689 THE1B-int 1605 - 19 310 102994 291 chain 85294 chr14 107349540 + 67132017 67132973 L1PA5 6144 + 5183 6138 41421 496 1 0 459 chain 211215 chr14 107349540 + 67151470 67153863 L1PA5 6144 - 0 2395 18420 188 0 1 276 1 0 384 0 4 173 0 1 517 0 1 93 4 0 757 chain 13173 chr14 107349540 + 67153863 67154009 L1P1 4361 + 2515 2661 145885 146 chain 26621 chr14 107349540 + 67155471 67155793 L1PA6 6164 + 5844 6161 97589 309 5 0 8 chain 12533 chr14 107349540 + 67165936 67166073 L1PA4 6152 + 6009 6146 150106 137 chain 457797 chr14 107349540 + 67168236 67174481 L1PA8A 6298 + 80 6279 8477 19 3 0 20 19 10 16 5 3 9 2 1 11 2 1 7 0 1 11 2 0 15 2 0 4 1 0 13 47 38 7 2 0 33 10 9 22 8 0 77 2 0 19 1 0 5 6 4 78 1 0 295 4 0 182 0 2 60 97 98 116 0 3 7 25 36 262 0 2 97 5 0 168 1 4 102 0 1 145 0 7 266 0 1 17 1 2 124 32 0 60 1 0 122 7 8 58 10 14 197 0 4 207 18 17 60 1 0 115 7 6 500 0 1 468 0 2 142 0 1 96 0 2 233 1 0 261 0 1 4 1 0 328 0 1 69 0 3 90 7 3 414 11 10 63 7 6 105 16 17 81 chain 28816 chr14 107349540 + 67177790 67178306 L1PB1 5432 - 14 503 89820 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 10 0 2 11 32 23 44 1 0 16 2 1 51 2 0 11 4 0 11 1 0 11 1 0 20 5 0 8 2 5 51 1 0 5 9 10 108 chain 87019 chr14 107349540 + 67178325 67179395 L1PA6 6164 - 10 1038 40772 83 0 4 657 0 3 88 1 5 7 0 1 79 54 0 101 chain 216813 chr14 107349540 + 67181656 67184831 L1PBa1 4058 - 18 3154 18067 42 2 1 16 1 0 6 56 47 9 1 0 4 2 1 20 2 0 14 7 0 14 1 0 4 14 12 106 6 4 39 1 0 29 1 0 8 5 4 112 5 1 54 6 0 6 7 13 39 1 0 305 5 2 93 18 0 367 12 18 44 0 4 33 14 12 93 23 10 17 0 4 152 6 11 135 0 3 139 0 17 314 1 0 10 11 10 21 1 2 23 3 2 59 13 6 206 0 1 209 7 6 152 14 16 35 chain 54321 chr14 107349540 + 67184831 67185529 LTR12_ 688 - 0 688 56151 163 0 7 119 21 22 207 24 7 139 1 0 24 chain 9678 chr14 107349540 + 67193457 67193670 Tigger4b 360 + 29 245 162205 12 23 17 54 13 24 28 1 0 19 19 18 44 chain 11942 chr14 107349540 + 67199561 67199711 THE1D-int 1627 + 1476 1627 152438 13 0 1 23 1 0 82 0 1 31 chain 20716 chr14 107349540 + 67210207 67210485 AluY 311 + 35 295 124908 83 4 0 15 1 0 155 13 0 7 chain 10192 chr14 107349540 + 67216566 67216777 L1MA3 4352 - 0 198 159667 13 33 28 23 1 0 5 8 7 18 2 0 23 4 0 81 chain 37270 chr14 107349540 + 67229968 67230370 L1HS 6032 - 11 413 73134 402 chain 23229 chr14 107349540 + 67238296 67238555 L1PA2 6032 - 4 263 114549 259 chain 11521 chr14 107349540 + 67243611 67243747 L1PA3long 6157 - 4 141 154214 110 0 1 26 chain 99924 chr14 107349540 + 67243747 67244903 L1P1 4361 + 3190 4341 36804 57 6 4 900 1 0 154 1 0 23 2 1 12 chain 4044 chr14 107349540 + 67250669 67250812 L1MDa 1598 + 333 473 206736 8 1 0 15 1 0 27 65 64 26 chain 25206 chr14 107349540 + 67255689 67256103 PABL_A-int 1935 - 1332 1744 103710 7 2 0 146 6 8 31 11 2 30 0 5 5 1 0 22 21 20 60 1 3 55 0 2 16 chain 42593 chr14 107349540 + 67259409 67259912 MER9a2 513 - 5 513 65910 52 0 4 66 1 2 384 chain 26944 chr14 107349540 + 67271735 67272088 THE1B 368 - 0 368 96472 15 0 1 183 1 0 104 6 21 44 chain 22195 chr14 107349540 + 67273681 67273992 THE1B 368 - 0 303 119373 61 9 1 6 4 0 29 0 1 104 0 3 98 chain 4175 chr14 107349540 + 67273998 67274042 THE1B 368 - 324 368 204917 44 chain 123378 chr14 107349540 + 67281722 67283554 L1PA13 3608 + 96 1903 29924 13 6 4 23 5 2 25 1 0 14 3 0 17 4 0 8 28 16 73 2 0 23 0 1 101 7 8 4 1 0 12 7 5 16 6 2 18 1 0 19 3 1 15 2 0 16 1 0 44 0 3 5 0 1 46 2 0 176 1 5 98 1 2 70 20 18 190 0 1 110 0 4 23 0 2 422 4 6 44 1 0 101 chain 91136 chr14 107349540 + 67301142 67302145 L1PA3long 6157 - 2169 3173 39225 41 1 2 961 chain 199323 chr14 107349540 + 67302145 67304314 L1PA3long 6157 + 3976 6149 19257 378 0 4 1791 chain 22966 chr14 107349540 + 67338343 67338657 L1PA8 5853 + 5545 5853 115777 19 1 0 44 2 0 70 2 1 11 2 0 53 1 0 17 1 0 33 0 2 58 chain 514452 chr14 107349540 + 67339702 67346082 L1PA7 6471 + 3 6470 5729 86 0 1 135 0 15 171 0 1 35 8 9 160 1 0 61 4 5 101 0 4 84 1 10 8 3 0 453 17 17 716 0 2 63 1 0 175 1 0 4 0 1 169 1 0 12 0 2 137 0 1 115 0 4 336 0 4 384 1 2 90 0 3 50 0 1 359 0 2 5 2 0 10 0 4 58 0 3 80 0 1 26 0 1 343 0 2 212 0 1 81 0 4 127 1 0 14 0 6 15 0 1 383 0 2 15 2 9 227 0 3 49 1 0 72 1 0 78 1 0 120 0 9 407 0 3 108 chain 13972 chr14 107349540 + 67359923 67360092 L1P1 4361 + 16 185 144079 169 chain 187945 chr14 107349540 + 67360092 67362223 L1PA5 6144 + 3994 6132 20244 697 4 6 420 0 1 173 0 4 837 chain 10018 chr14 107349540 + 67369658 67369772 L1P3 4156 + 3646 3761 160490 17 0 1 97 chain 7843 chr14 107349540 + 67370814 67370901 LTR12 884 - 148 235 172055 87 chain 56755 chr14 107349540 + 67387329 67388248 L1PB1 5432 - 8 883 54643 4 1 0 16 1 0 13 1 0 21 1 0 24 72 50 12 8 7 40 1 0 16 2 1 47 6 4 11 16 11 9 1 0 15 9 6 14 0 1 49 2 1 5 0 1 145 0 2 270 7 0 80 chain 56868 chr14 107349540 + 67388248 67388946 L1PB1 5432 + 3787 4484 54622 690 1 0 7 chain 27116 chr14 107349540 + 67396420 67396727 AluYk4 311 - 4 311 95883 307 chain 7605 chr14 107349540 + 67412137 67412334 L1PB1 5432 + 5250 5422 173510 31 1 0 19 26 12 14 12 9 11 2 0 24 1 0 17 5 4 13 1 0 8 1 0 6 1 0 4 chain 39741 chr14 107349540 + 67422269 67422721 L1PA5 6144 - 0 447 69697 121 4 0 218 1 0 108 chain 35563 chr14 107349540 + 67423072 67423459 L1PA3long 6157 - 469 856 75463 387 chain 34316 chr14 107349540 + 67423459 67423841 L1PA3long 6157 + 5775 6157 77184 382 chain 26182 chr14 107349540 + 67493364 67493658 AluYf4 310 - 15 310 99276 88 0 1 206 chain 232517 chr14 107349540 + 67507939 67510792 L1PA7 6471 - 4 2852 17171 839 1 4 115 19 5 503 1 0 171 1 0 178 0 1 443 0 2 73 0 1 123 1 4 59 8 9 318 chain 261520 chr14 107349540 + 67517961 67521385 L1PA10 4194 + 715 4150 15615 263 0 1 44 0 3 81 4 0 49 7 8 115 9 8 4 0 1 48 1 0 237 0 4 33 8 7 131 7 11 23 8 2 25 8 1 16 0 4 62 0 13 106 0 4 140 1 0 5 6 7 24 0 1 285 0 1 60 16 6 71 0 1 33 12 0 4 4 0 19 0 4 21 0 4 203 0 1 326 0 1 206 0 1 199 4 6 30 0 1 58 0 8 106 0 1 230 1 0 34 1 0 4 5 3 27 chain 7059 chr14 107349540 + 67522950 67523058 LTR12C 1709 - 851 943 177044 21 1 0 64 15 0 7 chain 432835 chr14 107349540 + 67529618 67534803 L1P2 5180 - 5 5178 9242 9 1 0 26 5 4 5 0 1 40 1 0 124 15 3 72 0 1 353 0 1 390 1 0 931 0 1 635 0 4 248 8 0 73 1 2 355 0 9 1095 1 0 6 1 0 271 2 1 256 13 12 53 2 1 44 1 0 147 chain 65243 chr14 107349540 + 67537615 67538358 L1PA5 6144 + 5399 6142 50444 743 chain 122416 chr14 107349540 + 67547352 67549024 L1PB1 5432 - 15 1662 30245 13 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 16 9 0 11 2 0 4 1 0 14 2 1 45 1 0 15 2 1 52 2 0 7 9 5 12 1 0 17 3 0 10 5 2 10 1 2 375 6 14 91 24 26 280 0 1 110 1 0 44 0 1 168 1 0 223 chain 27821 chr14 107349540 + 67553086 67553384 AluYf4 310 + 0 298 93629 298 chain 13227 chr14 107349540 + 67561551 67561736 Tigger3c 601 + 343 528 147365 98 9 9 78 chain 56739 chr14 107349540 + 67562036 67562656 L1PA3long 6157 + 5537 6157 54692 620 chain 3593 chr14 107349540 + 67583132 67583219 L1PB1 5432 + 5340 5422 213772 6 2 0 24 23 21 13 1 0 18 chain 59820 chr14 107349540 + 67593322 67593983 L1PA2 6032 + 5378 6032 52921 505 7 0 149 chain 28858 chr14 107349540 + 67616877 67617183 AluYa8 305 + 0 305 89631 292 1 0 13 chain 383695 chr14 107349540 + 67640795 67645316 L1PA6 6164 - 3 4542 10650 153 8 0 521 0 1 105 2 1 64 0 4 75 1 0 6 0 1 928 0 2 577 0 1 635 0 1 5 2 1 704 0 13 30 1 2 115 1 5 255 6 7 327 chain 4715 chr14 107349540 + 67668818 67668875 MER63D 473 + 49 106 198336 57 chain 175447 chr14 107349540 + 67679883 67681798 L1PA3long 6157 - 0 1915 21401 1915 chain 6618 chr14 107349540 + 67702836 67702947 L1MA8 2339 - 117 220 180317 26 8 0 14 1 0 22 2 3 38 chain 7485 chr14 107349540 + 67726943 67727031 5S 121 + 1 89 174236 88 chain 40656 chr14 107349540 + 67735047 67735624 MER41B 635 - 0 635 68361 32 0 1 73 0 3 40 10 35 37 0 3 12 3 1 176 12 38 46 8 10 128 chain 259841 chr14 107349540 + 67739835 67742829 L1PA5 6144 - 0 2996 15711 138 7 0 15 1 2 513 0 1 602 0 1 614 0 3 580 1 0 211 0 1 217 0 3 95 chain 7301 chr14 107349540 + 67756064 67756177 MER2 342 + 164 278 175436 43 9 10 61 chain 190812 chr14 107349540 + 67794208 67796363 L1PA5 6144 - 0 2169 19968 339 0 1 62 0 6 260 0 1 328 0 5 655 0 1 511 chain 5661 chr14 107349540 + 67806819 67806890 HY1 111 + 39 111 188462 67 0 1 4 chain 133283 chr14 107349540 + 67807385 67808898 SVA_D 2077 + 0 2060 27376 10 2 0 20 0 31 523 0 40 63 0 40 151 0 83 73 1 2 66 0 353 561 0 1 43 chain 23573 chr14 107349540 + 67814219 67814516 AluSp 311 - 13 311 112720 112 1 2 184 chain 23745 chr14 107349540 + 67833971 67834241 AluSc5 308 - 34 304 111808 270 chain 41955 chr14 107349540 + 67836557 67837048 MER9a1 513 - 0 513 66680 246 1 23 244 chain 25838 chr14 107349540 + 67846360 67846636 AluYa5 310 - 0 276 100712 276 chain 34637 chr14 107349540 + 67869410 67869974 L1MA2 4263 - 123 676 76706 15 3 1 9 4 2 9 4 3 43 7 0 26 0 4 21 0 2 11 0 1 28 12 10 91 0 1 6 1 0 48 3 0 147 19 18 57 chain 28560 chr14 107349540 + 67901460 67902188 MSTC 436 - 17 436 90920 58 16 17 104 0 1 8 8 0 16 315 0 67 1 9 121 0 4 14 chain 34715 chr14 107349540 + 67910578 67911054 MER4A1 472 + 0 472 76604 231 11 21 161 16 1 36 0 1 21 chain 13942 chr14 107349540 + 67916815 67917006 THE1B 368 + 183 368 144782 13 9 3 92 0 1 72 1 0 4 chain 125924 chr14 107349540 + 67917006 67918585 THE1B-int 1605 + 0 1605 29124 204 0 1 225 1 26 250 2 1 466 12 13 419 chain 11793 chr14 107349540 + 67919101 67919246 THE1B 368 + 210 356 153074 81 0 1 64 chain 3408 chr14 107349540 + 67920829 67920870 MIR 256 + 94 135 216943 41 chain 30871 chr14 107349540 + 67922609 67923034 L1PA15 4387 + 3584 4013 82733 40 1 12 16 4 6 155 2 0 18 5 0 8 1 2 49 2 0 44 1 0 79 chain 11233 chr14 107349540 + 67952839 67952991 THE1B 368 + 0 166 155296 44 7 21 101 chain 5491 chr14 107349540 + 67965052 67965123 LTR49 580 + 488 559 190126 71 chain 13953 chr14 107349540 + 67986905 67987405 L1MC1 2226 - 28 494 144742 14 1 0 32 156 134 26 85 79 24 6 0 33 1 0 7 8 7 62 4 7 41 chain 3388 chr14 107349540 + 68018189 68018227 MIR 256 - 122 160 217325 38 chain 6454 chr14 107349540 + 68061426 68061584 MER47A 366 - 25 153 181611 29 0 16 16 62 16 51 chain 8822 chr14 107349540 + 68075394 68075540 MLT1A0 366 - 60 213 166545 75 23 30 48 chain 7795 chr14 107349540 + 68078301 68078426 LTR75_1 542 - 0 126 172330 65 6 0 20 0 1 9 6 12 19 chain 6918 chr14 107349540 + 68079743 68079825 LTR23 429 - 15 97 178050 82 chain 4845 chr14 107349540 + 68080579 68080640 MER39 703 + 548 609 196838 61 chain 7568 chr14 107349540 + 68084020 68084129 HY1 111 - 0 108 173740 36 4 3 69 chain 3636 chr14 107349540 + 68085418 68085468 MER5A 189 - 138 189 213036 25 1 2 24 chain 6902 chr14 107349540 + 68091823 68091946 L1MB7 1623 + 628 758 178166 15 4 6 31 15 20 58 chain 3456 chr14 107349540 + 68096117 68096161 L1MA7 2200 + 1871 1915 216062 44 chain 22827 chr14 107349540 + 68097319 68097599 AluSg7 307 - 32 307 116463 196 6 1 78 chain 21425 chr14 107349540 + 68128599 68128876 AluY 311 + 9 286 122423 15 1 0 109 9 10 143 chain 14416 chr14 107349540 + 68147574 68148211 L1MB8 1703 + 344 605 143163 69 27 32 39 386 4 48 5 6 63 chain 198560 chr14 107349540 + 68173493 68177093 MER4-int 2692 - 12 2618 19314 369 2 1 33 0 1 145 3 4 97 220 0 129 10 12 106 2 1 30 3 4 27 0 2 211 6 1 136 0 1 44 2 0 14 1 0 156 0 4 233 0 1 27 312 0 106 7 6 54 3 0 6 4 5 174 0 4 269 3 1 25 4 3 14 1 0 60 469 7 39 2 0 8 0 3 8 1 0 25 chain 6684 chr14 107349540 + 68197010 68197088 MER33 330 + 13 91 179794 78 chain 14333 chr14 107349540 + 68199692 68199848 L1PA4 6152 + 5995 6151 143448 156 chain 3870 chr14 107349540 + 68207637 68207830 Zaphod 902 - 381 612 209318 27 133 171 33 chain 12064 chr14 107349540 + 68208840 68209108 L1MB3 1562 + 1309 1555 151924 13 0 5 24 1 0 44 73 46 13 4 6 64 1 0 31 chain 76405 chr14 107349540 + 68211130 68212120 L1PA8 5853 - 0 996 45259 93 1 0 19 2 1 33 7 10 18 2 1 70 3 1 43 1 0 476 1 4 72 5 8 69 10 10 34 0 3 31 chain 5573 chr14 107349540 + 68212123 68212190 U3 216 - 148 215 189340 67 chain 8042 chr14 107349540 + 68228393 68228483 L1PA5 6144 + 6054 6144 170798 90 chain 84906 chr14 107349540 + 68294785 68296335 L1PA11 4918 - 340 1551 41550 11 2 0 13 1 0 15 48 35 15 1 0 14 2 0 69 3 0 12 2 1 62 9 0 89 7 23 58 0 1 90 0 1 8 11 0 83 7 8 124 0 4 394 325 5 33 0 1 42 chain 16712 chr14 107349540 + 68311341 68311530 L1PA5 6144 - 3 192 136364 189 chain 547495 chr14 107349540 + 68334790 68340814 L1PA3long 6157 + 0 6156 1770 152 1 2 627 0 128 981 0 1 3400 0 1 91 0 1 772 chain 16218 chr14 107349540 + 68357180 68357361 L1PA3long 6157 - 0 181 137701 181 chain 2794 chr14 107349540 + 68359999 68360034 L1MC4a 1092 + 1057 1092 228815 35 chain 21545 chr14 107349540 + 68370762 68371226 L1PA15 4387 - 21 471 121985 10 1 0 28 5 1 7 1 0 5 3 1 39 14 11 47 6 5 6 4 0 63 69 72 115 0 6 7 7 1 10 1 0 16 chain 13144 chr14 107349540 + 68377012 68377152 AluYc 301 + 161 301 147667 140 chain 64643 chr14 107349540 + 68389299 68391127 L1PB1 5432 - 16 1137 50729 12 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 922 216 5 0 3 23 0 1 63 0 2 155 0 1 47 14 14 158 1 0 11 3 0 274 1 3 56 chain 42398 chr14 107349540 + 68391478 68391990 THE1B-int 1605 - 0 513 66154 204 1 2 307 chain 3944 chr14 107349540 + 68398877 68398920 L1PA16 3655 - 86 129 208215 43 chain 10048 chr14 107349540 + 68443179 68443287 L1PA4 6152 - 0 108 160327 108 chain 130750 chr14 107349540 + 68468775 68470637 L1PA11 4918 - 287 2143 27917 20 61 45 12 1 0 15 31 22 9 4 0 20 1 0 13 2 0 5 1 9 57 3 1 9 2 1 56 4 6 93 18 17 34 1 6 126 2 3 598 0 7 69 0 3 43 2 1 159 0 1 189 1 2 57 0 2 12 0 2 132 chain 24083 chr14 107349540 + 68482103 68482467 THE1B 368 - 0 368 109853 100 0 1 25 1 0 12 1 0 16 27 34 11 1 0 55 8 7 107 chain 19081 chr14 107349540 + 68497773 68498134 THE1B 368 - 0 368 129877 159 1 0 16 23 16 24 0 9 21 18 19 13 37 44 34 2 0 13 chain 6372 chr14 107349540 + 68507533 68507613 MER5A1 166 + 86 165 182237 40 1 0 39 chain 39298 chr14 107349540 + 68514908 68515338 L1PA5 6144 - 749 1179 70329 430 chain 64540 chr14 107349540 + 68515338 68516077 L1PA5 6144 + 5397 6137 50780 551 0 1 188 chain 8205 chr14 107349540 + 68530000 68530096 MSTA 426 + 27 123 169923 96 chain 27458 chr14 107349540 + 68539002 68539385 MLT2A1 477 - 82 477 94793 182 22 27 12 1 5 26 3 4 89 0 2 48 chain 11795 chr14 107349540 + 68548385 68548553 LTR1 825 - 7 177 153063 36 3 1 49 5 6 61 0 3 14 chain 274707 chr14 107349540 + 68557435 68560487 L1PA4 6152 - 16 3074 14940 830 1 5 2216 0 2 5 chain 117946 chr14 107349540 + 68567963 68569523 THE1C-int 1605 - 0 1605 31824 149 6 8 30 0 1 117 0 3 544 5 0 251 56 98 109 0 1 223 0 1 70 chain 63022 chr14 107349540 + 68581593 68582275 L1PA2 6032 + 5350 6032 51433 682 chain 95579 chr14 107349540 + 68586037 68587075 L1PA3long 6157 - 0 1038 37936 1038 chain 23784 chr14 107349540 + 68603010 68603321 AluSc 308 + 0 308 111566 59 4 0 189 17 18 42 chain 5855 chr14 107349540 + 68672745 68672903 L1MC4 1079 - 198 368 186638 46 73 85 39 chain 111730 chr14 107349540 + 68687813 68689380 L1PB1 5432 + 3865 5422 33747 4 0 1 127 7 8 57 0 5 269 0 5 216 2 0 64 0 2 11 4 0 73 1 0 255 0 14 138 3 0 24 1 0 8 1 0 12 16 10 49 6 5 15 1 0 45 1 0 14 49 36 14 2 0 24 1 0 21 1 0 31 chain 21812 chr14 107349540 + 68691414 68691707 AluSg7 307 - 14 307 120972 22 14 12 130 2 4 125 chain 24345 chr14 107349540 + 68707980 68708281 AluY 311 + 3 303 108392 129 0 1 122 0 1 30 3 0 17 chain 18432 chr14 107349540 + 68725978 68726178 L1PA4 6152 + 5951 6151 131686 200 chain 2955 chr14 107349540 + 68741793 68741828 L1MC5 759 - 302 337 225970 35 chain 43963 chr14 107349540 + 68769226 68769736 MER9a1 513 - 0 513 64248 59 1 3 308 0 1 142 chain 31217 chr14 107349540 + 68769812 68770185 L1PA7 6471 + 6084 6470 82126 214 5 18 154 chain 6466 chr14 107349540 + 68801328 68801424 L1MA8 2339 - 397 489 181502 11 2 0 5 2 0 76 chain 62056 chr14 107349540 + 68823721 68824570 Tigger1 2417 - 347 1231 51872 35 0 6 174 0 3 60 0 5 146 26 29 196 0 17 23 0 3 69 5 3 115 chain 28971 chr14 107349540 + 68840089 68840501 L1PA8 5853 + 5445 5853 89127 77 0 2 40 1 0 44 2 0 23 7 8 43 1 0 8 1 0 16 2 1 4 0 1 28 2 1 19 1 0 93 chain 2829 chr14 107349540 + 68848991 68849021 MER20 218 - 140 170 228242 30 chain 3764 chr14 107349540 + 68884789 68884833 U5 65 - 21 65 210895 44 chain 545229 chr14 107349540 + 68895483 68901602 L1PA5 6144 - 9 6144 2043 217 0 1 618 0 7 198 0 1 883 3 1 1122 0 1 989 0 3 252 0 1 233 0 1 685 0 4 365 1 0 553 chain 3073 chr14 107349540 + 68985867 68985903 MER63A 208 + 172 208 223529 36 chain 29230 chr14 107349540 + 69016126 69016430 AluYg6 310 - 6 310 87910 304 chain 135591 chr14 107349540 + 69048289 69049877 L1PA7 6471 + 4875 6470 26910 74 1 0 665 0 3 211 0 1 37 10 11 383 0 3 207 chain 20370 chr14 107349540 + 69071951 69072271 LTR10E 629 - 0 629 125999 7 1 0 52 25 22 14 1 0 158 1 0 15 1 315 35 0 1 10 chain 6258 chr14 107349540 + 69079231 69079311 L1MB3 1562 + 1339 1418 183102 13 1 0 66 chain 3759 chr14 107349540 + 69107953 69107996 L1MC 810 - 559 602 210964 43 chain 17201 chr14 107349540 + 69133545 69134269 MLT2C2 476 - 12 476 135035 30 8 0 7 404 161 19 0 2 74 30 31 35 21 9 96 chain 22229 chr14 107349540 + 69154011 69154271 AluY 311 + 40 293 119212 244 7 0 9 chain 8943 chr14 107349540 + 69202638 69202745 U6 107 - 0 107 165903 107 chain 5296 chr14 107349540 + 69218408 69218475 MADE1 96 + 1 96 192056 40 0 28 27 chain 3259 chr14 107349540 + 69239320 69239360 MER96 175 + 116 156 219789 40 chain 6156 chr14 107349540 + 69308311 69308389 MLT1B 390 + 295 373 183927 78 chain 36375 chr14 107349540 + 69318944 69319502 LTR10E 629 + 0 601 74392 18 0 1 76 26 79 121 1 0 29 6 5 47 1 0 72 4 0 88 1 0 12 25 22 31 chain 27147 chr14 107349540 + 69325849 69326212 MER34B 572 + 160 515 95771 7 1 0 44 0 1 83 1 0 75 7 0 145 chain 45300 chr14 107349540 + 69331894 69332559 LTR10E 629 + 0 629 62719 18 1 0 38 0 4 104 0 2 11 63 0 93 1 27 72 8 7 185 9 7 54 1 0 7 chain 26177 chr14 107349540 + 69353227 69353524 AluSc5 308 + 0 294 99290 68 3 0 226 chain 18322 chr14 107349540 + 69377382 69377746 THE1B 368 + 6 368 132012 6 1 0 78 26 27 60 27 24 9 0 4 10 30 28 54 7 6 56 chain 34621 chr14 107349540 + 69398772 69399224 MLT2A2 560 + 0 560 76726 180 1 0 122 2 111 147 chain 28442 chr14 107349540 + 69439960 69440327 THE1C 375 + 0 375 91411 134 0 4 47 1 0 92 0 6 67 1 0 25 chain 5772 chr14 107349540 + 69468592 69468755 MER5A1 166 - 1 166 187426 27 36 38 38 25 28 5 3 0 29 chain 7513 chr14 107349540 + 69610572 69610658 HY3 101 - 3 89 174075 86 chain 208613 chr14 107349540 + 69629515 69632735 L1MA2 4263 + 1210 4098 18595 109 9 14 136 0 1 54 30 34 411 2 1 221 0 1 329 14 12 21 1 5 85 3 0 6 0 1 154 14 25 44 5 0 188 0 4 500 1 0 6 1 2 9 22 18 25 0 3 33 1 0 134 20 17 27 320 0 64 34 13 39 12 10 92 7 0 17 0 3 20 chain 3867 chr14 107349540 + 69653764 69653812 MLT1J 494 - 321 369 209346 48 chain 39385 chr14 107349540 + 69677591 69678097 Tigger1 2417 - 183 679 70192 8 10 0 488 chain 160922 chr14 107349540 + 69684259 69686084 L1PA5 6144 - 1 1860 23210 411 0 5 424 1 8 179 0 1 59 12 31 98 0 1 610 0 1 31 chain 4595 chr14 107349540 + 69696923 69697011 MIR 256 + 101 190 199683 32 20 21 36 chain 61449 chr14 107349540 + 69743942 69744637 L1PA5 6144 - 1 695 52132 152 1 0 542 chain 7459 chr14 107349540 + 69744637 69744716 L1PA5 6144 + 5353 5432 174405 79 chain 8997 chr14 107349540 + 69745957 69746095 MER96B 391 - 229 368 165620 96 16 17 26 chain 4573 chr14 107349540 + 69750357 69750409 MIR 256 + 64 116 199958 52 chain 23156 chr14 107349540 + 69751421 69751752 THE1C 375 + 0 339 114868 40 0 5 51 18 19 66 2 1 31 7 10 116 chain 24974 chr14 107349540 + 69837971 69838272 AluSc5 308 - 12 308 104940 49 1 0 124 4 0 123 chain 25130 chr14 107349540 + 69871570 69871924 THE1C 375 - 0 375 104128 25 1 0 169 0 1 39 21 0 23 0 26 21 0 16 55 chain 519566 chr14 107349540 + 69882647 69888856 L1PA6 6164 - 8 6164 5205 12 1 0 133 0 1 36 52 0 729 0 1 384 1 0 498 0 4 103 0 1 37 0 1 208 0 3 242 5 0 66 5 0 92 2 0 60 31 1 90 1 0 177 0 5 189 0 4 676 0 4 73 0 1 879 1 0 10 0 5 40 0 2 245 9 10 211 3 0 99 0 17 297 2 1 331 1 0 178 chain 3894 chr14 107349540 + 69902256 69902304 MER58B 340 - 8 56 208963 48 chain 12097 chr14 107349540 + 69905912 69906047 L1PA5 6144 + 5997 6132 151805 135 chain 22634 chr14 107349540 + 69907385 69907667 AluSc5 308 - 5 296 117408 214 0 9 68 chain 24827 chr14 107349540 + 69914672 69914963 AluY 311 + 23 310 105736 278 4 0 9 chain 12976 chr14 107349540 + 69939339 69939497 Tigger3a 397 + 163 321 148328 158 chain 33795 chr14 107349540 + 69939498 69939984 MER1A 529 + 0 529 77945 17 0 1 62 15 55 82 6 7 175 0 3 58 16 14 55 chain 9735 chr14 107349540 + 69943945 69944105 THE1B 368 - 192 368 161912 11 1 2 80 24 39 44 chain 122702 chr14 107349540 + 69944110 69945639 THE1B-int 1605 - 5 1597 30162 69 1 2 449 1 11 158 0 3 196 0 4 170 0 20 59 7 32 419 chain 24678 chr14 107349540 + 69973910 69974401 L1MC1 2226 - 186 657 106564 47 18 13 66 3 2 23 56 47 99 59 54 120 chain 19821 chr14 107349540 + 69975336 69975758 LTR3A 482 - 62 482 127746 17 8 7 52 0 1 5 3 10 62 3 0 5 50 42 32 10 11 60 23 27 63 15 12 14 chain 22565 chr14 107349540 + 70012388 70012843 MER4A 717 - 266 717 117741 44 58 40 30 0 11 87 68 72 62 3 0 65 0 3 13 1 0 24 chain 19525 chr14 107349540 + 70050155 70050496 MSTA 426 + 0 337 128580 40 1 2 57 8 9 9 0 1 25 6 5 11 10 6 39 4 0 8 0 26 11 24 0 88 chain 3884 chr14 107349540 + 70071848 70071954 MER63B 433 - 323 433 209118 48 45 49 13 chain 6561 chr14 107349540 + 70086031 70086108 MER41A 554 + 390 468 180779 37 0 1 40 chain 24058 chr14 107349540 + 70105760 70106059 AluY 311 + 0 311 109992 77 10 7 48 0 1 102 0 14 62 chain 25734 chr14 107349540 + 70109095 70109461 THE1A 353 - 0 353 101148 18 3 0 5 0 3 125 0 1 91 9 8 13 18 5 84 chain 14253 chr14 107349540 + 70146208 70146411 MER30 238 + 0 238 143706 40 1 23 36 3 0 5 2 0 14 2 20 100 chain 14404 chr14 107349540 + 70195812 70195993 MER41B 635 - 450 635 143198 58 0 4 123 chain 24606 chr14 107349540 + 70202819 70203194 THE1B 368 - 0 368 106961 75 1 0 100 34 27 49 4 6 63 0 1 34 2 0 13 chain 12068 chr14 107349540 + 70203194 70203337 THE1B-int 1605 - 0 144 151910 17 1 2 125 chain 24195 chr14 107349540 + 70204521 70204816 AluY 311 + 4 299 109244 119 1 0 8 1 2 166 chain 177224 chr14 107349540 + 70207135 70209966 MER4-int 2692 - 0 2566 21229 112 5 15 103 1 0 177 0 3 6 0 2 92 1 0 44 0 1 4 1 3 6 0 4 140 2 3 26 0 1 59 1 0 124 0 1 8 1 2 6 0 1 281 4 5 29 134 149 73 0 1 15 0 3 13 3 4 66 6 5 60 1 3 6 0 1 120 4 3 23 1 0 25 1 0 137 0 2 7 0 3 1 10 0 67 332 26 128 0 2 365 chain 13591 chr14 107349540 + 70217542 70217697 MER107 203 + 5 162 146010 8 0 2 147 chain 11362 chr14 107349540 + 70227838 70227990 MSTD 398 + 0 172 154848 138 1 21 13 chain 24893 chr14 107349540 + 70266977 70267331 L1PREC2 3366 + 230 578 105394 17 1 0 10 2 0 32 18 17 94 1 0 68 1 0 110 chain 34442 chr14 107349540 + 70278179 70278617 LTR3A 482 + 3 464 77005 46 0 1 72 0 1 72 0 14 28 1 2 135 0 7 71 1 0 12 chain 30815 chr14 107349540 + 70288597 70289024 MLT2A1 477 - 0 470 82842 18 3 0 7 16 56 216 0 1 6 5 9 21 0 1 135 chain 414467 chr14 107349540 + 70289030 70294027 HERVL-int 5654 - 0 5654 9684 167 0 2 269 1 0 221 4 641 92 0 4 267 4 0 5 4 0 38 0 4 586 0 3 147 0 17 188 0 1 1117 7 1 197 5 8 561 5 0 24 3 4 219 0 5 866 chain 29004 chr14 107349540 + 70294027 70294538 MLT2A1 477 - 0 477 88969 39 106 54 11 0 12 188 6 10 12 8 9 34 0 1 107 chain 6339 chr14 107349540 + 70327832 70327995 MER53 195 + 8 164 182467 65 14 20 11 47 34 26 chain 4302 chr14 107349540 + 70338585 70338662 MER65A 464 + 0 91 203194 27 15 29 35 chain 9624 chr14 107349540 + 70339977 70340105 MER85 139 - 0 139 162472 32 4 15 92 chain 29870 chr14 107349540 + 70350606 70350922 AluYb8 318 - 2 318 85213 316 chain 119812 chr14 107349540 + 70369315 70370636 SVA_C 1631 + 14 1631 31117 6 0 1 194 1 0 558 0 296 562 chain 5205 chr14 107349540 + 70378594 70378661 L1ME1 1623 - 320 387 192977 67 chain 4952 chr14 107349540 + 70380106 70380164 MER53 195 - 0 58 195680 58 chain 14341 chr14 107349540 + 70434108 70434291 MER30 238 + 26 238 143416 82 1 30 100 chain 29720 chr14 107349540 + 70435964 70436382 MSTA 426 - 7 419 85757 203 13 1 58 14 19 20 0 1 110 chain 23591 chr14 107349540 + 70516068 70516358 L1PA7 6471 + 6178 6470 112627 135 7 9 148 chain 7265 chr14 107349540 + 70541416 70541555 MER96B 391 - 32 168 175689 18 7 6 40 1 0 4 11 9 43 0 1 15 chain 12945 chr14 107349540 + 70627891 70628034 AluY 311 + 167 311 148448 69 0 1 74 chain 29322 chr14 107349540 + 70650408 70650817 MER83 447 + 2 405 87417 222 10 17 59 5 1 68 10 1 35 chain 458182 chr14 107349540 + 70660712 70666829 L1PA8 5853 - 0 5790 8466 61 0 1 31 1 0 16 1 0 27 1 0 15 15 14 9 3 2 20 5 11 36 2 0 46 1 0 48 0 1 41 1 0 29 0 1 134 1 3 223 0 2 63 0 1 9 2 0 1048 16 17 37 1 3 996 2 1 25 3 0 68 0 1 195 0 23 110 0 4 271 0 16 176 2 1 33 0 1 437 340 19 717 0 1 141 7 5 197 2 0 5 5 7 146 26 14 186 49 13 13 1 0 11 2 0 8 chain 24359 chr14 107349540 + 70665020 70665313 L1PA3long 6157 - 1 294 108329 136 1 8 13 7 0 136 chain 23591 chr14 107349540 + 70671689 70672034 THE1B 368 + 0 368 112628 15 2 0 25 0 5 127 2 1 76 2 0 5 18 41 73 chain 31117 chr14 107349540 + 70704531 70704915 LTR3 431 + 29 422 82310 86 0 9 298 chain 231710 chr14 107349540 + 70707857 70710672 L1PA7 6471 - 4 2834 17219 10 1 0 18 2 1 120 23 24 663 0 7 6 3 6 612 0 5 441 0 1 295 0 1 350 1 0 270 chain 56455 chr14 107349540 + 70720118 70720778 L1PA7 6471 + 5811 6470 54876 655 1 0 4 chain 22731 chr14 107349540 + 70722028 70722591 LTR12C 1709 + 771 1537 116918 66 1 0 70 9 11 58 1 43 18 227 387 81 1 0 12 0 1 19 chain 129029 chr14 107349540 + 70730109 70731985 THE1A-int 1579 + 0 1567 28310 1019 0 2 85 4 5 160 312 0 296 chain 28020 chr14 107349540 + 70753488 70753842 THE1A 353 + 0 353 92930 110 1 0 243 chain 3207 chr14 107349540 + 70759028 70759072 MER4A1 472 + 0 45 220823 24 1 2 19 chain 30958 chr14 107349540 + 70760203 70760598 LTR7 482 - 0 482 82590 174 0 3 10 8 40 30 0 1 41 0 51 132 chain 280687 chr14 107349540 + 70763832 70768249 HERVH-int 3825 - 1 3821 14604 102 0 1 618 0 1 87 1 0 45 231 64 949 28 29 7 1 0 115 40 25 156 43 42 37 11 11 64 328 0 6 10 0 23 5 0 6 9 5 82 18 19 100 16 1 34 1 0 27 0 1 83 13 14 291 1 0 80 2 1 42 1 0 7 62 0 11 3 20 14 7 1 13 2 0 3 2 0 7 1 0 8 0 2 24 0 1 4 1 0 11 11 9 143 0 2 177 0 2 193 chain 507871 chr14 107349540 + 70771486 70777913 L1PA5 6144 - 9 6137 6336 109 0 4 541 1 0 231 12 12 16 2 1 821 0 5 473 0 10 23 317 0 495 2 15 245 1 0 824 1 0 103 4 1 45 2 1 157 10 13 35 0 5 67 0 5 343 0 5 97 1 0 98 4 0 6 0 4 156 18 6 211 25 0 92 0 1 4 1 0 674 33 46 65 0 1 62 chain 173420 chr14 107349540 + 70777918 70781193 MER4-int 2692 + 234 2688 21661 255 0 127 5 0 1 92 3 5 86 335 0 54 1 2 30 6 0 27 1 2 61 1 0 187 0 26 57 1 0 147 0 29 40 5 10 35 12 28 43 311 0 21 5 7 163 7 6 238 4 0 131 373 0 212 0 1 262 0 1 4 3 2 57 chain 21057 chr14 107349540 + 70780287 70780643 THE1B 368 + 0 356 123705 104 18 13 52 33 26 6 0 1 12 14 26 68 1 0 48 chain 40014 chr14 107349540 + 70781207 70781678 MER4A1 472 + 2 472 69304 176 1 0 294 chain 105406 chr14 107349540 + 70787771 70789029 L1PA7 6471 - 3 1288 35397 25 0 11 208 0 4 22 0 1 154 1 0 343 0 2 81 0 3 8 0 4 213 1 2 118 0 2 84 chain 10828 chr14 107349540 + 70789029 70789158 L1PA7 6471 - 60 189 155892 129 chain 7699 chr14 107349540 + 70789158 70789252 L1PA7 6471 - 653 751 171914 15 0 4 79 chain 158938 chr14 107349540 + 70812082 70814811 HERVH48-int 3304 + 100 3245 23473 10 2 0 6 7 3 7 2 0 5 0 4 8 2 0 10 45 34 11 2 0 23 1 0 35 12 0 22 1 0 8 11 6 4 1 0 66 6 2 8 1 0 68 1 0 14 6 0 13 9 3 78 2 1 10 3 1 66 8 0 3 1 0 17 4 0 17 1 0 4 3 1 67 8 6 18 1 6 10 1 0 28 7 595 80 0 3 89 1 0 79 0 1 9 1 0 113 4 5 160 2 1 177 0 17 62 1 0 21 1 0 66 1 0 13 1 0 47 1 0 229 1 0 3 1 0 19 1 0 44 1 0 3 1 0 18 2 0 25 2 0 17 2 0 7 2 0 11 134 98 27 3 0 8 11 5 26 13 5 9 1 0 23 2 0 6 1 0 44 1 0 3 2 0 53 0 2 13 63 47 66 92 67 26 chain 27746 chr14 107349540 + 70816811 70817202 MER48 407 + 0 407 93881 30 0 1 4 1 0 5 6 2 91 0 20 13 0 2 26 14 13 148 1 0 52 chain 23475 chr14 107349540 + 70826706 70827023 AluSq10 312 + 0 304 113246 16 11 4 100 7 0 54 8 9 121 chain 5523 chr14 107349540 + 70848350 70848421 MER5A 189 + 0 71 189812 71 chain 84758 chr14 107349540 + 70859644 70860679 L1PA8 5853 + 4807 5847 41613 43 0 6 153 2 0 71 0 1 52 0 7 339 0 1 84 1 0 44 2 0 14 2 0 57 1 0 9 1 0 55 1 0 17 1 0 9 0 1 77 chain 3043 chr14 107349540 + 70864806 70864839 MER52D 1964 - 758 791 224146 33 chain 3816 chr14 107349540 + 70869589 70869714 MER34C_ 573 + 165 311 210153 37 64 85 24 chain 4373 chr14 107349540 + 70872102 70872157 MADE1 96 - 0 96 202281 12 0 41 43 chain 48707 chr14 107349540 + 70886133 70886761 MER41B 635 + 0 635 59949 121 4 8 36 7 9 334 0 1 126 chain 36778 chr14 107349540 + 70893171 70893679 MER9a3 513 - 0 513 73835 68 9 12 150 18 0 8 0 17 147 10 11 80 0 2 18 chain 212125 chr14 107349540 + 70895878 70898675 L1PA8 5853 - 0 2906 18349 92 2 1 19 2 1 39 25 23 25 0 8 37 2 0 44 1 0 408 21 17 55 0 2 73 1 3 10 12 13 173 0 1 26 0 1 186 0 1 187 11 4 15 0 2 95 0 1 23 0 1 208 2 0 90 0 1 89 0 1 76 1 2 145 0 5 92 1 0 144 1 9 16 10 12 255 7 8 42 1 92 33 chain 331287 chr14 107349540 + 70898952 70903094 HERVL-int 5654 - 0 5654 12153 288 0 1 79 0 3 5 3 0 373 0 3 109 0 1 5 4 0 189 3 8 65 6 7 4 1 0 492 9 0 59 0 1 108 0 1 209 0 1 7 4 0 153 0 1523 39 1 0 36 7 1 798 5 6 190 10 13 228 8 3 443 0 1 202 chain 126204 chr14 107349540 + 70906064 70908414 HERV3-int 2824 - 158 2381 29031 7 1 0 28 1 0 37 3 0 40 34 23 12 1 0 38 20 19 45 1 0 102 1 0 131 1 0 28 3 1 9 2 0 11 0 1 39 2 1 16 1 0 14 1 0 4 1 0 26 1 0 8 3 1 20 1 0 3 2 0 17 32 25 65 0 1 50 2 0 39 33 31 25 1 0 11 53 37 11 1 0 4 1 0 3 2 0 8 14 9 17 2 0 10 29 19 5 1 0 16 1 0 22 2 0 5 1 0 8 1 0 16 2 1 12 9 7 16 1 0 32 1 0 8 83 72 6 2 0 7 1 0 5 1 0 22 0 1 4 6 5 10 1 0 11 1 0 7 0 1 92 1 0 86 1 0 29 16 15 8 2 0 48 1 0 15 8 7 13 1 0 96 7 8 56 2 0 17 1 0 68 10 8 110 2 0 15 13 11 138 1 0 5 1 0 33 chain 21478 chr14 107349540 + 70910194 70910529 MLT2A1 477 - 108 477 122228 23 8 20 88 10 21 13 1 2 22 0 1 8 3 0 32 1 13 126 chain 11237 chr14 107349540 + 70910532 70910702 MER4-int 2692 + 2512 2692 155274 29 3 1 21 6 16 51 1 3 59 chain 547792 chr14 107349540 + 70941920 70949566 L1PA2 6032 + 0 6030 1731 74 0 1 181 1 0 1467 1612 0 1076 18 0 483 0 3 18 0 11 113 0 1 391 1 0 2211 chain 137873 chr14 107349540 + 70943660 70945245 SVA_C 1631 + 0 1624 26501 18 0 11 577 6 0 44 0 40 125 11 7 5 0 2 23 4 0 38 0 1 19 1 0 714 chain 19478 chr14 107349540 + 70957439 70957827 THE1D 372 - 0 372 128720 32 1 0 55 26 11 28 72 79 28 0 4 30 0 1 52 12 0 52 chain 34064 chr14 107349540 + 70957842 70958998 THE1D-int 1627 - 16 1608 77521 18 1 4 93 1 33 133 689 1091 201 1 0 19 chain 45757 chr14 107349540 + 70961140 70961844 L1MA1 4479 + 3505 4189 62266 8 2 0 29 0 9 165 1 0 19 2 0 20 1 0 71 1 0 7 21 19 7 1 0 88 1 0 5 3 0 126 1 0 29 2 0 35 1 0 9 1 0 11 20 10 17 chain 535508 chr14 107349540 + 70968037 70974158 L1PA5 6144 + 0 6135 3515 723 1 0 712 0 4 317 0 1 27 0 1 110 0 1 1013 0 1 46 0 1 270 2 1 168 1 12 363 0 1 574 0 2 130 0 2 741 2 1 803 8 0 110 chain 65762 chr14 107349540 + 70974179 70975358 L1PA8 5853 + 5000 5853 50209 9 2 0 211 348 27 278 0 3 34 1 0 47 2 0 70 1 0 61 2 1 19 3 2 91 chain 32689 chr14 107349540 + 70977227 70977680 L1PA7 6471 + 6063 6468 79708 97 47 0 147 0 7 7 8 0 147 chain 38022 chr14 107349540 + 71000000 71000477 L1PA8 5853 + 5377 5847 72093 187 1 0 44 2 0 71 16 14 51 1 0 16 1 0 87 chain 18536 chr14 107349540 + 71003286 71003703 LTR19A 502 + 2 430 131406 18 28 27 106 37 100 22 40 2 101 44 31 21 chain 17733 chr14 107349540 + 71005676 71005874 MER11D 897 + 2 200 133612 198 chain 77216 chr14 107349540 + 71005878 71006749 MER11D 897 + 0 895 44862 118 0 1 474 1 24 278 chain 32011 chr14 107349540 + 71008066 71009234 LTR19-int 1103 + 124 1058 80847 7 1 0 18 1 0 5 44 24 19 35 29 29 28 6 31 28 23 9 5 0 40 8 0 88 6 1 23 58 29 43 1 17 11 4 0 19 147 116 8 1 0 51 43 14 10 1 0 10 4 1 17 2 0 4 1 0 35 41 16 15 31 15 15 1 0 45 19 7 26 1 0 10 23 6 19 4 2 9 3 1 11 chain 29159 chr14 107349540 + 71010574 71011050 LTR19A 502 + 0 502 88261 34 27 26 93 33 59 18 1 0 200 11 9 45 1 5 13 chain 17372 chr14 107349540 + 71012172 71012401 L1M1 2793 + 2452 2685 134591 149 0 6 22 1 0 44 1 0 12 chain 568234 chr14 107349540 + 71014013 71020039 L1HS 6032 + 6 6032 17 6026 chain 12030 chr14 107349540 + 71024388 71024586 MER30 238 + 0 238 152072 12 22 34 48 0 6 11 4 20 21 0 6 80 chain 24693 chr14 107349540 + 71041080 71041367 AluY 311 + 0 293 106473 17 0 5 110 0 1 160 chain 6519 chr14 107349540 + 71046064 71046151 L1PA17 2846 - 153 238 181089 44 1 0 17 1 0 24 chain 12432 chr14 107349540 + 71052181 71052348 MER30 238 + 10 204 150519 105 1 23 25 0 5 36 chain 3341 chr14 107349540 + 71082948 71082986 L1MA6 2487 + 2340 2378 218208 38 chain 3361 chr14 107349540 + 71091829 71091923 LTR32 486 + 21 113 217855 34 12 17 12 23 16 13 chain 3152 chr14 107349540 + 71130089 71130229 MER20 218 + 56 213 221895 6 1 0 16 86 104 31 chain 18870 chr14 107349540 + 71142185 71142456 AluSg4 309 + 31 291 130459 91 0 1 4 26 16 138 2 0 10 chain 6784 chr14 107349540 + 71148292 71148499 MER33 330 - 104 324 179076 21 84 0 9 11 108 82 chain 25578 chr14 107349540 + 71155262 71155559 AluSp 311 - 15 311 101831 122 1 0 174 chain 23656 chr14 107349540 + 71186999 71187303 AluSp 311 - 9 302 112274 7 5 0 8 5 0 10 1 0 268 chain 3343 chr14 107349540 + 71188391 71188433 MIRc 230 - 120 163 218164 26 0 1 16 chain 3380 chr14 107349540 + 71198268 71198305 MER58A 224 + 162 199 217498 37 chain 84944 chr14 107349540 + 71210036 71211065 L1PA7 6471 + 5420 6469 41537 123 1 2 79 0 2 184 0 1 303 0 2 35 0 1 88 0 1 57 8 15 87 0 6 45 1 0 18 chain 721 chr14 107349540 + 71230552 71230620 Tigger3b 1229 + 278 349 148912 9 0 4 4 1 0 54 chain 28549 chr14 107349540 + 71230620 71230926 AluYb8 318 + 0 305 90969 132 1 0 173 chain 1920 chr14 107349540 + 71231581 71231762 Tigger3b 1229 + 585 775 148912 30 0 1 45 0 2 5 6 8 12 19 23 64 chain 7227 chr14 107349540 + 71232369 71232475 MER30 238 - 0 123 175903 45 1 4 31 2 16 27 chain 29299 chr14 107349540 + 71265188 71265494 AluYa5 310 - 4 310 87583 306 chain 6180 chr14 107349540 + 71282359 71282539 L1MA8 2339 + 2063 2268 183740 31 29 62 40 0 9 7 37 23 22 3 0 11 chain 2913 chr14 107349540 + 71301160 71301193 MLT2B4 540 + 503 536 226823 33 chain 39650 chr14 107349540 + 71320490 71320971 MER41A 554 + 0 490 69824 93 0 1 50 4 7 319 0 5 15 chain 26513 chr14 107349540 + 71320972 71321254 AluYa5 310 - 8 290 98001 282 chain 18652 chr14 107349540 + 71321917 71322155 MER41-int 2638 + 2397 2636 131082 54 2 3 182 chain 5353 chr14 107349540 + 71323922 71323987 MER5A1 166 + 52 117 191509 65 chain 23888 chr14 107349540 + 71324770 71325063 AluSp 311 - 18 311 110970 181 1 2 5 1 0 105 chain 40743 chr14 107349540 + 71342417 71342970 MER41A 554 - 0 554 68254 73 12 17 55 9 32 345 27 0 32 chain 41920 chr14 107349540 + 71343788 71344239 L1PA5 6144 + 5440 5891 66731 451 chain 22085 chr14 107349540 + 71344241 71344484 L1PA5 6144 + 5892 6135 119864 243 chain 525408 chr14 107349540 + 71402849 71408970 L1PA5 6144 - 0 6139 4641 463 1 0 390 1 0 669 1 0 4 0 1 272 0 4 320 1 0 136 0 2 162 0 1 550 2 0 647 0 3 201 4 6 95 2 0 269 0 3 559 0 3 215 15 6 37 5 7 973 1 15 126 chain 102006 chr14 107349540 + 71409869 71411390 THE1C-int 1605 + 0 1599 36262 16 1 2 92 0 54 169 3 0 107 14 21 207 0 1 23 63 73 246 11 9 16 47 48 16 0 3 11 2 0 5 0 2 22 16 17 79 0 2 40 15 18 300 chain 17579 chr14 107349540 + 71411408 71411750 THE1C 375 + 13 375 134058 33 1 7 16 16 17 23 14 15 55 51 63 133 chain 74205 chr14 107349540 + 71414080 71415157 MER11B 1079 + 0 1079 46409 221 0 4 138 5 6 29 0 1 124 0 1 138 14 13 43 1 0 14 32 22 16 15 17 7 0 2 24 5 6 41 0 1 16 4 5 83 0 1 78 1 0 28 chain 106837 chr14 107349540 + 71425948 71427109 L1PA3long 6157 - 0 1161 35025 1161 chain 38497 chr14 107349540 + 71427141 71427593 L1P1 4361 + 3888 4341 71440 8 0 2 193 0 2 57 1 0 155 1 0 23 2 1 12 chain 3740 chr14 107349540 + 71436058 71436107 MamRep137 426 - 51 99 211340 5 1 0 43 chain 30427 chr14 107349540 + 71437842 71438160 AluYb8 318 - 0 318 83626 318 chain 140047 chr14 107349540 + 71486478 71488182 L1PA7 6471 - 1 1706 26138 85 31 5 58 6 0 6 18 27 494 0 2 93 0 2 20 0 3 54 1 0 15 0 4 25 0 11 141 0 1 485 0 1 143 0 1 29 chain 82849 chr14 107349540 + 71503531 71504426 L1PA2 6032 - 1529 2424 42244 895 chain 140356 chr14 107349540 + 71504426 71505951 L1PA2 6032 + 4503 6031 26091 865 0 3 660 chain 268706 chr14 107349540 + 71531339 71534629 L1PA7 6471 - 3 3294 15250 152 0 1 202 1 0 492 1 0 152 0 4 61 0 2 301 0 1 432 0 4 40 1 2 620 7 4 68 1 0 4 0 1 215 3 1 103 0 3 30 17 24 46 1 0 288 20 6 32 chain 532185 chr14 107349540 + 71545567 71552019 L1PA7 6471 - 4 6471 3942 6 5 0 123 0 1 247 0 4 130 1 2 144 35 0 164 19 23 20 0 4 399 1 0 448 0 1 79 0 4 719 0 1 246 1 4 91 0 1 40 13 17 4 0 1 39 0 4 14 6 5 128 10 9 447 5 9 165 7 14 189 0 2 168 12 8 78 1 0 368 3 6 4 1 0 16 0 1 235 0 2 419 0 4 192 2 1 231 0 4 374 5 10 398 chain 27302 chr14 107349540 + 71556154 71556496 THE1C 375 - 33 373 95271 165 0 1 51 3 0 123 chain 14946 chr14 107349540 + 71565661 71565863 L1PA16 3655 - 3067 3268 141482 83 2 1 117 chain 5442 chr14 107349540 + 71590835 71590923 MER87B 500 - 9 105 190589 33 8 16 47 chain 29850 chr14 107349540 + 71590923 71591331 LTR7 482 + 0 482 85276 69 8 46 109 0 1 33 0 32 17 0 1 111 12 14 49 chain 282512 chr14 107349540 + 71591340 71595057 HERVH-int 3825 + 7 3825 14503 328 1 0 195 1 0 11 1 0 4 0 1 24 1 0 10 1 0 10 122 0 13 16 10 5 1 0 12 4 0 6 0 42 5 2 0 13 2 1 15 21 0 67 0 1 4 2 0 442 15 0 203 9 0 11 15 17 13 1 0 282 0 2 25 0 1 292 22 27 117 1 2 531 1 2 16 0 12 267 33 35 39 8 218 260 0 2 69 0 8 148 chain 2405 chr14 107349540 + 71591927 71591954 HERVH-int 3825 + 472 499 203532 27 chain 2396 chr14 107349540 + 71591994 71592034 HERVH-int 3825 + 541 580 234256 29 2 1 9 chain 47079 chr14 107349540 + 71597389 71598020 MER41B 635 + 0 635 61141 128 0 1 69 7 4 93 0 2 154 18 17 81 0 5 81 chain 6691 chr14 107349540 + 71598738 71598895 MER49 923 - 352 504 179755 30 40 41 61 15 9 11 chain 3129 chr14 107349540 + 71607012 71607048 MER20 218 - 93 129 222369 36 chain 51930 chr14 107349540 + 71607090 71607748 PABL_A 660 + 0 660 57664 85 11 9 229 0 5 234 8 7 91 chain 75632 chr14 107349540 + 71613934 71614888 LTR13 1007 + 0 959 45696 73 2 0 53 4 0 8 0 7 240 4 5 297 26 28 104 0 1 143 chain 38913 chr14 107349540 + 71616468 71616967 MER9a3 513 + 0 513 70849 16 0 2 93 0 1 133 1 13 175 2 3 19 2 0 58 chain 3666 chr14 107349540 + 71618927 71618967 MSTA 426 - 44 84 212451 40 chain 103310 chr14 107349540 + 71634073 71635408 LTR12C 1709 + 0 1709 35922 290 4 6 39 1 44 41 5 6 38 4 5 287 1 2 36 11 327 103 11 4 94 1 19 272 13 12 84 chain 10846 chr14 107349540 + 71638456 71638626 L1PA8 5853 + 5693 5853 156800 47 31 21 92 chain 37184 chr14 107349540 + 71638841 71639324 MER75 514 + 33 513 73254 227 4 0 236 1 2 15 chain 28136 chr14 107349540 + 71641320 71641732 LTR8 732 + 0 412 92520 128 33 32 29 1 0 4 1 3 216 chain 19035 chr14 107349540 + 71673114 71673480 THE1B 368 + 0 368 130016 39 0 6 61 10 11 60 31 28 4 1 0 4 0 1 10 16 14 68 7 6 17 8 9 30 chain 43257 chr14 107349540 + 71686099 71686636 MER41A 554 - 7 554 65109 103 0 8 314 0 1 23 10 11 87 chain 5884 chr14 107349540 + 71698699 71698798 MER52D 1964 + 1164 1255 186343 41 23 15 35 chain 27532 chr14 107349540 + 71714336 71714735 MSTA 426 - 0 426 94569 215 5 7 36 5 9 25 1 0 6 6 28 56 6 6 38 chain 116495 chr14 107349540 + 71720828 71722264 LTR12C 1709 + 0 1709 32282 121 1 0 145 5 4 129 1 0 110 4 5 136 0 278 184 1 0 4 4 2 100 16 10 350 0 2 61 0 4 64 chain 114498 chr14 107349540 + 71735301 71736847 THE1C-int 1605 + 0 1594 32948 11 7 6 82 0 57 36 13 0 248 5 12 108 0 1 46 0 1 144 6 0 392 9 10 45 19 20 177 0 1 8 1 0 189 chain 12062 chr14 107349540 + 71757729 71757872 MER41B 635 - 488 635 151941 16 0 4 127 chain 25213 chr14 107349540 + 71765224 71765506 AluSq10 312 + 8 290 103673 282 chain 8584 chr14 107349540 + 71796428 71796556 L1MB2 1706 - 733 857 167820 56 0 1 4 1 0 23 4 0 40 chain 23505 chr14 107349540 + 71804086 71804430 THE1B 368 - 20 368 113104 107 19 17 10 0 4 10 1 0 4 12 16 11 1 0 169 chain 10998 chr14 107349540 + 71809036 71809171 L1PA16 3655 - 394 529 156215 48 0 1 8 1 0 78 chain 212176 chr14 107349540 + 71834877 71837161 L1PA2 6032 - 1 2285 18345 2284 chain 112841 chr14 107349540 + 71843281 71844736 SVA_B 1603 - 0 1603 33424 230 3 33 196 0 1 101 38 0 67 1 0 21 1 82 7 0 3 11 1 0 87 1 0 28 0 40 59 9 45 33 0 3 485 4 33 17 15 0 10 19 0 11 chain 19140 chr14 107349540 + 71864726 71864941 AluYk4 311 - 6 221 129710 215 chain 25605 chr14 107349540 + 71883944 71884216 AluYf4 310 + 38 310 101704 272 chain 12796 chr14 107349540 + 71884218 71884416 Tigger2 2703 - 216 429 149071 43 0 1 9 0 3 57 5 0 5 1 6 16 7 18 55 chain 29590 chr14 107349540 + 71886197 71886513 AluYb8 318 - 2 318 86235 316 chain 69756 chr14 107349540 + 71901892 71902677 L1PA5 6144 - 0 783 48488 11 3 1 771 chain 2882 chr14 107349540 + 71926099 71926141 MLT2A1 477 - 0 44 227345 6 0 4 29 2 0 5 chain 453469 chr14 107349540 + 71926576 71932424 HERVL-int 5654 - 0 5654 8636 225 0 6 202 1 0 72 0 1 176 0 2 268 8 5 131 1 4 468 0 2 160 0 4 285 0 1 458 0 15 395 0 11 96 0 1 271 0 2 25 0 25 227 0 1 237 0 3 356 0 1 28 4 0 398 323 0 141 2 1 75 0 5 248 0 30 135 0 1 195 0 7 7 0 4 18 11 12 41 0 2 65 0 10 95 chain 31548 chr14 107349540 + 71932424 71932837 MLT2A1 477 - 0 477 81570 6 0 4 26 1 56 62 1 0 143 0 1 6 5 9 23 0 1 140 chain 16953 chr14 107349540 + 71934993 71935332 MSTB 430 - 10 369 135721 89 0 3 72 16 14 31 49 63 7 0 5 12 27 27 36 chain 18947 chr14 107349540 + 71972432 71972766 Tigger4b 360 + 53 360 130236 62 33 24 94 1 0 57 37 20 50 chain 20558 chr14 107349540 + 71979087 71979320 AluSc 308 + 64 297 125443 233 chain 26410 chr14 107349540 + 71985487 71985836 THE1A 353 - 0 353 98374 158 0 3 82 2 1 21 5 6 20 0 1 61 chain 24953 chr14 107349540 + 72019108 72019385 AluYk11 308 - 9 281 105041 167 5 0 105 chain 17795 chr14 107349540 + 72034183 72034429 MER41B 635 - 86 331 133429 81 13 12 152 chain 19334 chr14 107349540 + 72038294 72039034 MSTC 436 - 0 436 129128 47 365 37 24 7 28 16 23 22 17 0 1 10 9 1 85 44 55 93 chain 33518 chr14 107349540 + 72078136 72078594 L1PA8 5853 - 11 471 78374 81 2 1 19 3 2 23 0 6 22 1 0 9 6 5 27 0 2 37 3 1 43 1 0 35 0 1 146 chain 22372 chr14 107349540 + 72086826 72087075 AluSp 311 - 52 301 118617 249 chain 28764 chr14 107349540 + 72097608 72097949 L1PA6 6164 - 16 359 90047 153 1 3 187 chain 21702 chr14 107349540 + 72101716 72102022 AluSq2 311 + 4 295 121377 136 8 5 6 0 3 134 15 0 7 chain 19056 chr14 107349540 + 72122352 72122664 L1PA17 2846 - 153 452 129954 43 1 0 19 5 4 27 1 0 51 15 14 18 5 0 16 4 0 107 chain 29048 chr14 107349540 + 72141270 72141580 AluYa5 310 - 0 310 88769 310 chain 206632 chr14 107349540 + 72143189 72145586 L1PA5 6144 - 0 2732 18743 12 7 2 245 1 0 169 0 1 102 0 2 295 3 4 654 1 0 22 2 337 713 0 2 84 0 1 87 chain 170730 chr14 107349540 + 72145586 72147543 L1PA5 6144 + 1412 3380 21943 363 0 2 416 0 2 373 0 3 39 0 5 9 3 2 382 4 0 247 1 3 76 0 2 44 chain 5227 chr14 107349540 + 72147622 72147707 LTR1 825 - 711 808 192753 22 12 24 51 chain 25304 chr14 107349540 + 72167438 72167740 AluY 311 + 9 311 103202 123 0 1 98 1 0 80 chain 8814 chr14 107349540 + 72173040 72173174 MER33 330 + 142 288 166587 30 5 8 66 1 0 7 0 10 25 chain 22928 chr14 107349540 + 72228377 72228654 AluSp 311 + 11 282 115973 40 6 0 231 chain 68614 chr14 107349540 + 72238557 72239330 LTR17 781 - 9 781 48976 445 1 0 327 chain 36382 chr14 107349540 + 72241614 72242051 MER4A1 472 + 0 472 74385 64 0 14 147 0 21 226 chain 32481 chr14 107349540 + 72249625 72250045 LTR9 672 + 0 420 80063 70 1 0 12 1 0 9 1 0 56 0 4 187 1 0 82 chain 17315 chr14 107349540 + 72252514 72252731 Tigger3a 397 + 139 366 134745 22 0 10 195 chain 6800 chr14 107349540 + 72256026 72256131 MER96B 391 + 222 325 178955 51 4 3 18 1 0 31 chain 5861 chr14 107349540 + 72272718 72272787 MSTC 436 + 367 436 186573 69 chain 36593 chr14 107349540 + 72273543 72274017 L1P1 4361 - 3406 3921 74104 9 0 1 108 7 44 180 0 4 60 1 0 109 chain 374760 chr14 107349540 + 72274020 72278404 L1PA6 6164 + 1796 6162 10930 529 15 0 71 9 0 412 0 3 378 0 1 508 4 1 1333 0 1 110 5 6 759 1 0 4 0 1 205 1 2 31 0 2 9 chain 2971 chr14 107349540 + 72279848 72279952 MIR 256 - 35 152 225637 25 51 54 11 0 10 17 chain 2820 chr14 107349540 + 72282922 72282952 MER4D 903 + 0 30 228463 30 chain 23920 chr14 107349540 + 72304825 72305094 L1PA4 6152 - 9 279 110811 141 0 1 128 chain 39303 chr14 107349540 + 72305170 72305755 L1M1 2793 - 946 1477 70316 168 25 8 14 51 12 248 0 2 79 chain 556039 chr14 107349540 + 72309689 72315713 L1PA2 6032 - 9 6032 719 4902 1 0 1121 chain 407906 chr14 107349540 + 72323382 72328817 L1PB1 5432 + 38 5404 9853 14 1 2 37 1 2 351 3 0 54 0 1 45 1 0 7 5 6 49 5 6 83 0 1 65 1 2 260 10 10 28 1 0 20 0 1 40 1 0 273 1 0 4 11 0 931 1 0 183 10 14 37 0 1 276 4 1 20 11 8 111 0 1 752 14 0 86 5 21 365 1 0 306 4 9 100 0 2 80 0 2 100 0 1 80 0 2 215 59 11 24 1 0 9 1 0 9 6 2 9 2 0 52 3 2 16 1 0 43 1 0 16 1 0 4 20 9 18 6 10 9 2 0 24 1 0 21 1 0 13 chain 8713 chr14 107349540 + 72336669 72336781 MSTD 398 + 286 398 167125 112 chain 531282 chr14 107349540 + 72339362 72345541 L1PA5 6144 - 0 6144 4043 143 7 8 22 0 1 847 0 1 1447 1 0 1371 30 0 545 0 1 327 1 0 261 9 0 99 0 1 292 0 3 354 4 1 359 0 1 60 chain 125477 chr14 107349540 + 72346525 72348092 THE1B-int 1605 + 0 1594 29252 194 0 1 235 1 26 70 0 1 4 0 1 185 1 0 877 chain 79410 chr14 107349540 + 72353771 72354858 MER11A 1151 + 0 1151 43866 59 1 100 71 1 0 64 4 0 149 0 1 94 0 1 145 5 6 120 0 26 26 43 0 22 18 0 36 0 1 60 13 14 156 chain 45009 chr14 107349540 + 72362835 72363388 MER41A 554 - 0 554 63046 241 1 0 295 1 3 15 chain 27913 chr14 107349540 + 72365235 72365620 L1PA8 5853 - 5 385 93310 88 1 0 19 2 1 35 13 12 14 1 0 57 0 3 11 2 0 44 1 0 40 1 0 56 chain 28025 chr14 107349540 + 72394370 72394674 AluYg6 310 - 8 310 92915 176 2 0 126 chain 4053 chr14 107349540 + 72402701 72402749 MLT2A1 477 - 10 57 206607 10 1 0 37 chain 408884 chr14 107349540 + 72403234 72408161 HERVL-int 5654 - 0 5654 9836 225 0 6 89 1 3 55 0 3 43 0 5 327 0 3 794 7 9 449 0 1 294 0 2 528 0 4 80 0 3 549 0 4 266 5 7 235 7 8 4 1 0 186 14 0 19 0 11 269 5 696 43 0 2 432 chain 29234 chr14 107349540 + 72408198 72408594 MLT2A1 477 - 84 477 87889 8 6 0 212 0 4 26 0 1 42 5 4 12 1 0 84 chain 9646 chr14 107349540 + 72411539 72411660 Tigger3a 397 - 78 206 162374 18 0 1 44 0 5 18 0 1 41 chain 44336 chr14 107349540 + 72422052 72422603 MER41A 554 - 1 554 63779 388 0 1 69 7 8 87 chain 31413 chr14 107349540 + 72423087 72423517 MLT2A1 477 - 65 477 81789 8 6 0 10 14 0 10 2 0 61 1 0 149 1 5 26 0 1 142 chain 33291 chr14 107349540 + 72435558 72435948 L1PA5 6144 - 14 405 78739 91 0 1 32 0 7 8 7 0 252 chain 13379 chr14 107349540 + 72438727 72438876 L1PA6 6164 - 2 151 146787 149 chain 543849 chr14 107349540 + 72442982 72449028 L1PA3long 6157 - 0 6157 2232 5 0 2 1765 0 1 1678 0 3 1718 0 2 77 1 129 40 26 0 583 0 1 153 chain 33739 chr14 107349540 + 72464642 72465105 MER4A1 472 - 5 472 78030 100 25 27 307 1 0 11 0 1 4 0 2 15 chain 22191 chr14 107349540 + 72466288 72466631 MSTA 426 + 57 405 119391 84 12 18 53 6 10 23 1 0 95 4 5 21 6 1 38 chain 4026 chr14 107349540 + 72474494 72474659 MLT1F-int 966 + 474 640 206991 29 90 97 6 6 0 34 chain 44743 chr14 107349540 + 72503665 72504272 LTR12 884 + 0 873 63341 58 3 108 165 0 47 96 3 0 74 0 103 92 5 13 55 12 18 44 chain 16574 chr14 107349540 + 72532499 72532689 L1PA3long 6157 - 8 197 136725 140 1 0 49 chain 21464 chr14 107349540 + 72533654 72533900 L1PA8 5853 - 274 519 122277 17 1 0 228 chain 19794 chr14 107349540 + 72533900 72534195 L1PA8 5853 + 5565 5853 127837 43 2 0 71 2 1 12 10 8 40 2 1 17 4 3 92 chain 3548 chr14 107349540 + 72534644 72534688 MER5A1 166 + 95 139 214583 44 chain 14515 chr14 107349540 + 72613065 72613336 MSTD-int 1705 - 16 289 142839 31 54 53 102 1 2 14 6 8 63 chain 10282 chr14 107349540 + 72614891 72615123 AluJr 308 + 63 291 159223 62 88 87 72 3 0 7 chain 72891 chr14 107349540 + 72620223 72621242 MER11A 1151 - 0 1144 47075 51 12 13 166 0 1 55 11 44 12 2 1 126 6 9 134 0 1 94 0 1 54 0 1 4 1 0 56 0 2 32 4 0 66 1 0 6 4 96 17 0 1 80 9 5 16 chain 13518 chr14 107349540 + 72624556 72624712 L1PA7 6471 - 2 158 146291 156 chain 37697 chr14 107349540 + 72627654 72628107 L1PA7 6471 + 6012 6470 72558 234 0 6 197 1 0 21 chain 11856 chr14 107349540 + 72629347 72629491 L1PB1 5432 + 4956 5100 152806 144 chain 10617 chr14 107349540 + 72629582 72629737 L1PB1 5432 + 5134 5281 157742 22 2 0 3 2 0 9 2 0 52 2 1 15 1 0 45 chain 7269 chr14 107349540 + 72629777 72629899 L1PB1 5432 + 5308 5422 175660 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 41561 chr14 107349540 + 72651535 72652074 MLT2A2 560 - 0 560 67205 43 5 1 103 0 11 39 6 20 343 chain 51278 chr14 107349540 + 72682084 72682671 LTR10C 591 - 0 587 58131 80 2 1 501 0 1 4 chain 39288 chr14 107349540 + 72711947 72712459 MER9a1 513 - 0 513 70342 246 1 23 129 20 0 104 1 0 11 chain 43490 chr14 107349540 + 72716476 72716959 L1PA2 6032 + 5547 6030 64825 483 chain 116131 chr14 107349540 + 72750421 72751945 THE1B-int 1605 + 0 1600 32405 429 1 26 43 9 14 117 8 17 39 8 25 133 3 17 116 1 0 180 0 1 57 0 6 380 chain 26633 chr14 107349540 + 72764137 72764429 L1PA2 6032 - 6 298 97543 292 chain 21350 chr14 107349540 + 72769476 72769814 THE1B 368 + 0 368 122686 14 0 2 153 1 0 6 25 28 11 0 4 6 7 6 12 1 0 64 1 25 37 chain 36057 chr14 107349540 + 72782949 72783368 L1PA6 6164 - 4 421 74827 6 2 0 411 chain 7009 chr14 107349540 + 72784486 72784628 MLT2A2 560 - 0 147 177411 41 4 6 7 1 0 7 1 0 11 25 30 45 chain 111557 chr14 107349540 + 72791084 72792358 L1PA5 6144 - 18 1296 33790 153 1 2 601 0 2 66 0 1 453 chain 25919 chr14 107349540 + 72823268 72823638 THE1C 375 + 0 374 100340 46 5 0 138 3 2 39 7 8 35 0 10 71 1 0 25 chain 15977 chr14 107349540 + 72835648 72835875 MER30 238 - 3 238 138424 97 2 0 9 14 24 105 chain 27978 chr14 107349540 + 72840799 72841120 L1PA5 6144 - 0 321 93078 321 chain 32110 chr14 107349540 + 72858324 72858711 L1PA6 6164 - 15 402 80671 387 chain 70295 chr14 107349540 + 72860834 72861733 MER11C 1089 - 37 1089 48270 57 0 1 8 1 0 200 1 9 65 0 122 253 1 18 52 0 3 206 0 3 55 chain 376944 chr14 107349540 + 72862251 72866508 L1PA4 6152 - 9 4273 10848 138 1 2 555 4 0 63 2 1 134 6 0 591 1 0 99 10 3 60 0 4 544 1 0 1414 0 21 101 1 0 210 0 2 322 chain 39959 chr14 107349540 + 72866508 72866969 L1PA4 6152 + 1398 1860 69134 326 0 1 135 chain 4383 chr14 107349540 + 72874148 72874215 MLT2B4 540 - 45 113 202162 15 5 6 47 chain 539853 chr14 107349540 + 72876274 72882395 L1PA4 6152 - 1 6152 2834 73 0 1 628 5 1 819 1 0 271 0 4 979 0 1 191 1 0 980 0 2 190 2 0 556 0 4 263 1 4 196 1 11 247 1 0 57 3 16 428 0 1 228 chain 23467 chr14 107349540 + 72888673 72888985 THE1B 368 + 60 368 113280 105 10 7 9 1 0 187 chain 35558 chr14 107349540 + 72913226 72913706 MER1A 529 - 6 492 75469 129 9 12 76 12 11 64 0 4 190 chain 20393 chr14 107349540 + 72934831 72935100 AluSc8 310 + 10 301 125917 22 6 21 52 0 1 26 0 3 89 0 3 74 chain 4159 chr14 107349540 + 72946186 72946232 MER20 218 - 141 187 205111 46 chain 26237 chr14 107349540 + 72956781 72957136 THE1B 368 + 0 368 99067 44 0 15 48 13 14 51 2 1 22 2 0 173 chain 13629 chr14 107349540 + 72970042 72970269 MLT1A0-int 1658 - 37 271 145863 24 43 50 160 chain 9054 chr14 107349540 + 72973963 72974178 MLT1C 463 + 237 463 165290 18 75 87 85 5 4 32 chain 5275 chr14 107349540 + 72998427 72998566 L1MA8 2339 - 20 141 192256 20 54 37 5 1 0 59 chain 20182 chr14 107349540 + 73022844 73023203 THE1D 372 - 0 372 126588 126 54 76 92 33 24 54 chain 4273 chr14 107349540 + 73150075 73150151 MER5A 189 + 95 167 203572 25 14 10 37 chain 9273 chr14 107349540 + 73163515 73163648 MER5A 189 + 56 189 164200 70 10 9 6 0 1 47 chain 8431 chr14 107349540 + 73164980 73165085 MER47A 366 + 109 220 168684 15 0 6 90 chain 27066 chr14 107349540 + 73171762 73172260 MER1A 529 + 0 514 96049 18 1 0 4 20 41 89 80 75 104 6 1 118 9 10 31 0 5 18 chain 55724 chr14 107349540 + 73173536 73174142 L1PA3long 6157 - 0 606 55289 606 chain 125526 chr14 107349540 + 73214698 73216264 THE1B-int 1605 + 0 1593 29233 430 1 26 529 0 1 466 7 8 133 chain 33402 chr14 107349540 + 73244889 73245377 MER1A 529 + 0 524 78562 43 0 1 36 26 63 26 3 0 6 1 4 282 12 10 53 chain 6298 chr14 107349540 + 73251930 73252102 MIR 256 - 4 154 182807 28 2 0 31 1 48 12 67 0 31 chain 6504 chr14 107349540 + 73319933 73320027 HY1 111 - 0 99 181204 35 4 5 22 0 4 33 chain 26265 chr14 107349540 + 73337620 73337956 THE1A 353 - 0 353 98959 79 0 18 146 2 1 109 chain 115786 chr14 107349540 + 73337965 73341592 THE1A-int 1579 - 9 1576 32531 146 6 7 31 7 36 179 92 3 297 7 8 123 4 0 4 3 0 63 13 16 294 1988 2 55 13 0 133 3 4 166 chain 106413 chr14 107349540 + 73339588 73340782 L1PA4 6152 + 4948 6143 35149 577 0 1 4 2 1 472 1 2 138 chain 28269 chr14 107349540 + 73341594 73341947 THE1A 353 - 0 353 92049 243 1 0 64 0 1 45 chain 12218 chr14 107349540 + 73351679 73351845 AluY 311 + 134 294 151349 11 2 3 38 13 6 102 chain 38145 chr14 107349540 + 73374173 73374632 MER41A 554 + 0 469 71920 180 7 17 272 chain 4585 chr14 107349540 + 73376178 73376231 U13_ 108 - 54 107 199798 53 chain 27909 chr14 107349540 + 73394052 73394358 AluYf5 307 - 0 307 93326 94 0 1 212 chain 6668 chr14 107349540 + 73429678 73429750 tRNA-Cys-TGY 72 + 0 72 179928 72 chain 58409 chr14 107349540 + 73449907 73450571 L1PA5 6144 - 0 672 53742 155 1 0 30 3 0 390 0 12 85 chain 7077 chr14 107349540 + 73450571 73450646 L1PA5 6144 + 5400 5475 176902 75 chain 19152 chr14 107349540 + 73489604 73489874 AluSz 310 + 16 288 129675 110 29 31 131 chain 15670 chr14 107349540 + 73500447 73502199 MER101 471 - 15 471 139367 23 6 5 26 423 93 79 16 34 27 1037 57 14 3 0 98 chain 18236 chr14 107349540 + 73502390 73502655 AluSx3 311 + 10 274 132245 54 2 0 68 0 1 6 26 26 109 chain 22965 chr14 107349540 + 73505877 73506151 AluSp 311 + 22 296 115781 274 chain 3242 chr14 107349540 + 73551005 73551044 tRNA-Ile-ATT 40 - 1 40 220204 39 chain 16536 chr14 107349540 + 73551265 73551474 AluSp 311 - 15 226 136821 15 2 4 192 chain 27615 chr14 107349540 + 73554100 73554402 AluYk4 311 - 9 311 94311 302 chain 11524 chr14 107349540 + 73559301 73559440 L1PA4 6152 - 19 157 154197 131 1 0 7 chain 22732 chr14 107349540 + 73562046 73562330 AluY 311 + 16 298 116909 93 2 1 104 2 1 83 chain 20966 chr14 107349540 + 73579686 73579948 L1PA7 6471 - 2 257 124048 10 7 0 245 chain 32655 chr14 107349540 + 73594293 73594737 MER4A1 472 + 14 462 79754 171 19 20 164 1 4 89 chain 24291 chr14 107349540 + 73605386 73605691 AluY 311 + 0 298 108695 82 0 1 40 1 0 3 6 0 150 7 6 16 chain 34151 chr14 107349540 + 73636646 73637090 MER41B 635 - 191 635 77412 146 8 7 162 1 2 127 chain 31102 chr14 107349540 + 73638121 73638562 LTR10F 562 - 0 562 82340 87 2 0 194 12 18 10 0 24 16 0 4 17 0 1 4 5 88 70 0 5 24 chain 87310 chr14 107349540 + 73650002 73651007 SVA_D 2077 - 2 1210 40642 10 6 0 523 0 225 370 11 0 30 3 1 13 2 0 25 1 0 11 chain 99274 chr14 107349540 + 73651043 73652302 SVA_F 1814 - 578 1814 36957 72 78 0 152 0 64 55 77 68 825 chain 4855 chr14 107349540 + 73651115 73651193 SVA_F 1814 - 699 777 126439 78 chain 23411 chr14 107349540 + 73652826 73653103 AluSp 311 + 21 298 113588 277 chain 2475 chr14 107349540 + 73675141 73675246 MER52A 1651 - 836 872 233364 25 69 0 11 chain 4245 chr14 107349540 + 73713525 73713577 U6 107 - 41 96 203937 16 0 3 36 chain 10314 chr14 107349540 + 73767464 73767582 L1PA5 6144 - 99 217 159071 118 chain 36196 chr14 107349540 + 73775932 73776426 L1PA8 5853 + 5347 5849 74630 217 1 0 46 2 0 68 2 1 9 8 7 10 0 15 14 12 11 15 2 1 88 chain 7610 chr14 107349540 + 73780018 73780220 Tigger4 2445 + 2229 2407 173478 39 2 1 17 5 4 11 22 19 40 20 14 5 1 0 17 12 0 11 chain 14657 chr14 107349540 + 73791568 73791882 LTR56 451 + 3 314 142404 26 5 6 18 73 72 9 1 2 62 8 4 112 chain 16428 chr14 107349540 + 73798289 73798607 THE1D 372 + 0 332 137126 47 3 0 20 18 19 36 16 17 27 28 27 26 3 19 94 chain 23761 chr14 107349540 + 73807503 73807873 THE1D 372 + 0 372 111703 135 59 60 133 0 1 43 chain 4724 chr14 107349540 + 73812702 73812765 Charlie1b 519 - 195 256 198238 8 1 0 34 1 0 19 chain 29369 chr14 107349540 + 73853577 73853889 AluYa5 310 - 0 310 87211 184 2 0 126 chain 10163 chr14 107349540 + 73854177 73854325 THE1C 375 + 155 307 159786 30 1 2 25 8 11 84 chain 8015 chr14 107349540 + 73866843 73866964 L1MC1 2226 + 1931 2045 170961 50 7 2 12 2 0 50 chain 76666 chr14 107349540 + 73872804 73873652 L1PA5 6144 - 0 849 45137 594 0 1 254 chain 3271 chr14 107349540 + 73896673 73896709 MADE1 96 - 59 95 219576 36 chain 5274 chr14 107349540 + 73915804 73915883 MADE1 96 + 0 96 192271 23 5 22 51 chain 24414 chr14 107349540 + 73946144 73946434 AluSp 311 - 13 311 108008 224 0 8 66 chain 24168 chr14 107349540 + 73964336 73964614 AluSp 311 - 18 296 109388 278 chain 9387 chr14 107349540 + 73966983 73967096 MER30 238 + 122 238 163623 74 0 3 39 chain 7288 chr14 107349540 + 73968136 73968227 FLAM_A 137 - 16 110 175530 79 0 3 12 chain 5633 chr14 107349540 + 73994329 73994395 L1M1 2793 + 1185 1251 188735 66 chain 11053 chr14 107349540 + 74017983 74018228 MER50B 698 + 0 268 156001 19 10 14 11 3 0 5 1 2 28 5 6 21 35 29 72 4 30 31 chain 75504 chr14 107349540 + 74028889 74029965 MER11A 1151 + 0 1146 45766 85 0 91 54 0 4 60 4 0 38 0 2 105 4 5 94 0 1 144 0 2 103 0 1 21 0 26 26 43 0 24 22 5 29 0 1 19 0 1 4 1 0 36 6 7 78 5 9 71 chain 114787 chr14 107349540 + 74032171 74033585 LTR12C 1709 - 0 1709 32850 61 9 10 13 1 0 316 1 0 81 0 4 106 2 0 8 1 0 83 0 278 695 0 17 37 chain 3820 chr14 107349540 + 74049706 74049764 LTR26 622 + 312 369 210085 12 2 1 44 chain 5536 chr14 107349540 + 74055533 74055596 tRNA-Lys-AAA 73 - 5 68 189713 63 chain 13333 chr14 107349540 + 74056930 74057097 LTR12C 1709 - 733 940 146966 126 0 40 41 chain 22879 chr14 107349540 + 74071982 74073260 LTR8 732 + 0 732 116188 19 0 1 10 0 9 113 11 10 31 1 0 6 32 48 56 861 283 80 32 40 26 chain 18608 chr14 107349540 + 74072841 74073065 AluSp 311 + 63 287 131197 224 chain 58408 chr14 107349540 + 74074039 74075418 THE1C-int 1605 - 814 1590 53744 100 12 13 7 1 0 68 0 1 83 617 0 67 0 7 110 0 6 314 chain 25622 chr14 107349540 + 74075434 74075802 THE1C 375 - 0 375 101614 26 1 0 17 0 1 4 1 0 96 4 7 15 5 8 14 1 2 11 1 2 172 chain 20567 chr14 107349540 + 74089129 74089401 AluSp 311 - 35 310 125404 122 0 2 94 12 13 44 chain 7671 chr14 107349540 + 74093376 74093470 Tigger1 2417 + 871 965 173096 94 chain 24394 chr14 107349540 + 74095185 74095472 AluSp 311 + 10 297 108110 287 chain 5409 chr14 107349540 + 74109861 74109942 LOR1b 457 + 0 89 190901 35 5 13 41 chain 6096 chr14 107349540 + 74120369 74120443 MER101 471 - 397 471 184452 74 chain 4482 chr14 107349540 + 74135750 74135806 MLT1B 390 - 240 296 200992 56 chain 25337 chr14 107349540 + 74149572 74149878 AluSp 311 - 4 311 103038 25 4 5 277 chain 28112 chr14 107349540 + 74170041 74170464 LTR7B 505 + 0 496 92597 105 0 10 69 35 11 17 0 88 65 1 0 23 0 1 52 17 16 39 chain 298288 chr14 107349540 + 74170473 74174231 HERVH-int 3825 + 0 3825 13515 532 87 0 25 0 3 10 1 0 10 1 0 24 28 0 15 43 0 11 30 26 42 2 1 24 5 4 52 2 1 438 8 0 5 7 0 218 0 1 239 8 35 397 18 15 639 0 12 291 9 11 37 0 200 7 0 10 18 19 14 231 0 2 225 chain 2110 chr14 107349540 + 74171226 74171248 HERVH-int 3825 + 676 698 237560 22 chain 30171 chr14 107349540 + 74175487 74175909 LTR7B 505 + 0 496 84269 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 46 2 1 22 0 1 52 17 16 39 chain 22442 chr14 107349540 + 74243506 74243778 AluSg7 307 + 13 288 118283 116 1 2 142 0 2 13 chain 21047 chr14 107349540 + 74294645 74294907 AluSc 308 + 23 284 123741 234 1 0 27 chain 27743 chr14 107349540 + 74304518 74304814 AluYa5 310 + 0 295 93893 132 1 0 163 chain 7420 chr14 107349540 + 74342951 74343041 MLT1B 390 - 15 105 174650 90 chain 7807 chr14 107349540 + 74367434 74367656 MER30 238 + 0 238 172268 22 13 14 71 90 105 26 chain 44353 chr14 107349540 + 74379904 74380454 LTR61 567 + 0 567 63748 25 0 1 29 0 11 125 1 2 30 2 1 167 0 5 171 chain 20430 chr14 107349540 + 74401497 74401774 AluSc 308 + 28 289 125813 188 18 2 71 chain 17411 chr14 107349540 + 74412154 74412413 AluSg7 307 - 21 289 134475 18 19 28 58 5 6 50 2 1 107 chain 81029 chr14 107349540 + 74451463 74452424 L1PA5 6144 - 14 979 43180 38 4 0 137 5 13 137 1 0 532 1 2 106 chain 14174 chr14 107349540 + 74455982 74456171 AluSz 310 + 0 188 143972 137 1 0 32 0 1 4 2 1 13 chain 16465 chr14 107349540 + 74484084 74484299 AluSp 311 + 84 300 137026 54 15 15 51 1 2 94 chain 3459 chr14 107349540 + 74493282 74493328 MADE1 96 - 33 96 216006 9 0 17 37 chain 30114 chr14 107349540 + 74509971 74510287 AluYb8 318 + 0 316 84437 316 chain 3293 chr14 107349540 + 74517429 74517481 MER20B 722 - 37 90 219126 12 0 4 30 3 0 7 chain 25202 chr14 107349540 + 74535798 74536093 AluSg7 307 - 0 296 103730 175 0 1 120 chain 6137 chr14 107349540 + 74558118 74558188 HY4 93 - 3 73 184102 70 chain 28488 chr14 107349540 + 74568157 74568462 AluYa5 310 - 7 310 91237 171 2 0 132 chain 42335 chr14 107349540 + 74591800 74592271 L1PA4 6152 - 482 952 66225 236 1 0 234 chain 42032 chr14 107349540 + 74592271 74592738 L1PA4 6152 + 5671 6138 66578 467 chain 5004 chr14 107349540 + 74610707 74610776 L1MA6 2487 - 83 147 195096 6 1 0 20 4 0 38 chain 32697 chr14 107349540 + 74640941 74642027 Tigger3b 1229 - 46 575 79695 12 0 3 162 5 15 27 600 25 105 0 5 49 13 15 56 7 5 50 chain 5469 chr14 107349540 + 74695291 74695363 MER41B 635 + 511 615 190320 50 0 32 22 chain 2936 chr14 107349540 + 74695816 74695934 MIR 256 + 112 231 226403 33 67 68 18 chain 25131 chr14 107349540 + 74770853 74771158 AluSp 311 - 5 311 104121 24 0 1 281 chain 24518 chr14 107349540 + 74778475 74778772 AluSq2 311 - 14 311 107455 297 chain 10702 chr14 107349540 + 74842770 74842931 THE1B 368 - 204 367 157406 29 26 28 106 chain 4962 chr14 107349540 + 74846440 74846560 Tigger3c 601 + 255 351 195572 55 49 25 16 chain 89104 chr14 107349540 + 74851383 74852400 L1P2 5180 - 2179 3194 39965 682 2 0 333 chain 13061 chr14 107349540 + 74865279 74865509 MER30 238 - 0 238 147990 103 38 37 61 13 22 15 chain 5945 chr14 107349540 + 74882084 74882178 MER5A 189 - 98 189 185731 45 6 0 14 4 7 25 chain 24644 chr14 107349540 + 74918994 74919349 THE1B 368 + 0 368 106763 102 1 0 17 19 27 23 1 0 23 2 0 12 2 10 13 0 1 140 chain 27784 chr14 107349540 + 74935912 74936232 L1PA5 6144 + 5818 6143 93754 52 0 5 268 chain 25047 chr14 107349540 + 74957769 74958062 AluSc 308 - 4 297 104559 293 chain 3841 chr14 107349540 + 74997528 74997578 MLT1K 546 + 481 530 209768 44 1 0 5 chain 7639 chr14 107349540 + 75002907 75003187 L1MA8 2339 + 2010 2265 173291 51 115 99 14 30 24 35 2 0 24 1 0 8 chain 23568 chr14 107349540 + 75007191 75007462 AluY 311 + 5 277 112754 127 0 1 144 chain 3908 chr14 107349540 + 75052078 75052129 MIR 256 - 30 81 208727 51 chain 33150 chr14 107349540 + 75056727 75057455 L1PB3 3668 + 3072 3581 78987 219 1 0 51 0 8 39 13 12 41 0 1 29 229 12 12 1 0 7 1 0 15 1 0 10 3 1 37 7 3 12 chain 29113 chr14 107349540 + 75074617 75074922 AluYb8 318 - 13 318 88496 305 chain 25245 chr14 107349540 + 75079652 75079953 AluSp 311 - 21 311 103502 165 11 0 125 chain 24381 chr14 107349540 + 75093260 75093555 AluSp 311 + 0 301 108190 77 0 6 218 chain 21389 chr14 107349540 + 75100642 75100912 AluSc5 308 + 6 277 122547 102 1 2 167 chain 113641 chr14 107349540 + 75168335 75169826 THE1B-int 1605 - 0 1605 33192 9 0 1 77 0 17 325 9 9 215 2 3 363 0 6 75 6 5 50 17 102 163 0 3 154 13 15 13 chain 26508 chr14 107349540 + 75170923 75171352 MER4A1 472 - 0 472 98014 173 21 30 16 7 28 4 1 0 14 0 13 74 39 40 80 chain 25409 chr14 107349540 + 75171746 75172031 AluSp 311 - 16 301 102637 285 chain 19261 chr14 107349540 + 75183787 75184036 AluSc 308 + 7 258 129342 41 5 1 6 0 4 11 0 2 186 chain 23094 chr14 107349540 + 75190269 75190546 AluSp 311 + 20 297 115168 277 chain 317158 chr14 107349540 + 75193319 75196816 L1PA3long 6157 - 8 3512 12720 1266 0 4 559 0 1 109 0 2 1563 chain 39592 chr14 107349540 + 75201709 75202188 LTR15 485 - 0 476 69900 104 0 2 33 10 0 8 0 1 34 0 4 290 chain 8881 chr14 107349540 + 75212584 75212746 THE1B 368 - 204 368 166225 47 30 31 41 7 8 37 chain 23545 chr14 107349540 + 75222751 75223011 AluSp 311 + 1 262 112879 140 0 1 120 chain 4056 chr14 107349540 + 75243778 75243829 MER82 654 + 597 648 206534 51 chain 7308 chr14 107349540 + 75275710 75275964 L1MB8 1703 - 667 924 175384 83 141 145 22 1 0 7 chain 26376 chr14 107349540 + 75335255 75335555 AluYf4 310 + 0 297 98508 123 3 0 174 chain 32961 chr14 107349540 + 75370662 75371225 MER4B 649 - 30 629 79274 45 15 14 21 39 30 62 34 35 125 0 3 67 18 60 137 chain 21805 chr14 107349540 + 75392278 75392595 AluSp 311 + 0 297 121001 68 14 12 52 3 0 153 15 0 12 chain 4203 chr14 107349540 + 75394894 75394942 Tigger4a 237 - 189 237 204509 48 chain 20614 chr14 107349540 + 75432987 75433290 THE1B 368 - 62 368 125246 20 2 1 42 2 1 12 1 0 10 15 22 29 1 0 169 chain 131739 chr14 107349540 + 75460674 75463048 LTR12C 1709 + 0 1709 27690 104 7 5 98 1 9 93 0 1 4 1 0 400 162 0 123 1 0 274 641 0 6 2 0 107 0 4 248 0 131 102 chain 6315 chr14 107349540 + 75461446 75461544 LTR12C 1709 + 776 873 83772 61 1 0 36 chain 14466 chr14 107349540 + 75461942 75462103 LTR12C 1709 + 951 1112 73749 161 chain 30353 chr14 107349540 + 75462103 75462582 LTR12C 1709 + 793 1111 74828 44 161 0 274 chain 7996 chr14 107349540 + 75462147 75462237 LTR12C 1709 + 996 1086 77461 90 chain 4636 chr14 107349540 + 75462250 75462308 LTR12C 1709 + 939 997 140345 58 chain 48746 chr14 107349540 + 75487919 75488709 L1PA15 4387 + 3583 4327 59913 66 1 2 115 0 2 15 26 0 30 2 0 16 4 0 61 2 0 22 9 10 10 1 0 136 1 0 34 1 0 22 7 6 55 1 0 28 10 4 50 9 6 42 4 2 10 chain 23977 chr14 107349540 + 75490917 75491192 AluSp 311 - 25 300 110463 275 chain 11279 chr14 107349540 + 75495426 75495569 Tigger2a 444 - 79 222 155135 143 chain 25141 chr14 107349540 + 75510520 75510804 AluSp 311 + 10 294 104058 284 chain 8014 chr14 107349540 + 75524701 75524871 MSTB1 431 - 36 260 170968 52 29 29 32 13 72 11 5 0 28 chain 30680 chr14 107349540 + 75569559 75569907 L1PA5 6144 + 5797 6144 83069 329 1 0 18 chain 6568 chr14 107349540 + 75582411 75582546 MER5A1 166 + 13 165 180719 52 29 39 20 7 14 27 chain 22305 chr14 107349540 + 75589220 75589492 AluSc5 308 - 18 307 118895 39 0 5 121 1 0 66 0 13 45 chain 5483 chr14 107349540 + 75615540 75615602 MSTD 398 + 23 85 190187 62 chain 23537 chr14 107349540 + 75642182 75642461 L1PA5 6144 + 5872 6143 112921 263 8 0 8 chain 7448 chr14 107349540 + 75651974 75652117 MER21A 919 + 29 174 174457 52 42 45 32 1 0 16 chain 29795 chr14 107349540 + 75678116 75678435 AluYb8 318 + 0 316 85452 132 3 0 184 chain 24765 chr14 107349540 + 75720485 75720775 AluSp 311 - 7 297 106081 290 chain 3098 chr14 107349540 + 75737445 75737479 U2 167 - 133 167 222933 34 chain 21090 chr14 107349540 + 75770736 75771026 AluSg 306 + 11 296 123577 247 15 17 11 7 0 10 chain 2370 chr14 107349540 + 75776094 75776124 MIRb 242 - 99 128 234515 5 1 0 24 chain 3716 chr14 107349540 + 75819587 75819627 5S 121 - 30 70 211684 40 chain 29355 chr14 107349540 + 75841259 75841737 MLT2A2 560 + 0 560 87271 59 1 2 135 0 6 64 8 14 21 0 1 4 1 0 34 36 98 18 11 17 13 0 1 10 0 1 5 2 1 56 chain 16256 chr14 107349540 + 75844527 75847052 MSTD 398 + 0 383 137589 123 72 113 36 2184 0 48 20 21 42 chain 7498 chr14 107349540 + 75849580 75849768 L1MA3 4352 - 49 233 174169 15 33 29 23 4 0 43 27 31 43 chain 20973 chr14 107349540 + 75881477 75881736 AluY 311 + 40 297 124019 92 0 1 148 4 1 15 chain 5087 chr14 107349540 + 75882266 75882405 MIR 256 + 40 181 194205 23 7 6 10 24 26 45 18 19 12 chain 4100 chr14 107349540 + 75884682 75884841 MIR 256 - 25 190 205937 24 95 101 40 chain 26475 chr14 107349540 + 75899622 75899927 AluSp 311 + 0 311 98146 125 0 6 180 chain 5452 chr14 107349540 + 75899936 75900016 MADE1 96 - 0 96 190506 38 5 21 37 chain 25497 chr14 107349540 + 75952074 75952423 THE1D 372 - 10 372 102238 22 1 0 27 0 1 87 1 0 32 3 6 103 6 16 46 0 1 21 chain 21996 chr14 107349540 + 76039371 76039668 AluSc8 310 + 11 306 120250 41 10 6 59 4 3 12 0 3 171 chain 24713 chr14 107349540 + 76052429 76052840 LTR7B 505 - 16 505 106372 35 14 13 48 5 7 21 1 0 17 0 1 36 1 89 27 35 11 69 0 10 8 0 3 94 chain 4033 chr14 107349540 + 76055214 76055262 MSTB2-int 240 - 43 91 206887 48 chain 41420 chr14 107349540 + 76067282 76067773 MER9a1 513 - 0 513 67395 246 1 23 244 chain 8012 chr14 107349540 + 76070515 76070605 5S 121 + 0 90 170981 90 chain 5506 chr14 107349540 + 76073699 76073776 MER57F 435 - 25 100 189984 5 2 0 70 chain 18865 chr14 107349540 + 76148317 76148553 AluSc 308 + 65 300 130475 192 2 1 42 chain 83201 chr14 107349540 + 76160979 76162059 MER11B 1079 + 0 1079 42250 315 9 11 211 0 1 4 8 7 148 0 1 43 10 0 20 8 11 107 1 2 82 0 1 66 0 1 19 1 0 14 1 2 13 chain 6327 chr14 107349540 + 76209673 76209748 MLT1A 405 - 4 79 182572 75 chain 42677 chr14 107349540 + 76218082 76218642 MER41A 554 - 0 554 65803 69 1 2 140 11 2 113 14 15 119 0 1 93 chain 23361 chr14 107349540 + 76251519 76251821 AluSc 308 - 6 308 113860 84 6 0 6 1 8 161 1 0 43 chain 15884 chr14 107349540 + 76258546 76258727 L1PA5 6144 + 5964 6141 138696 171 4 0 6 chain 171082 chr14 107349540 + 76261789 76264150 L1PB1 5432 - 10 2350 21930 4 1 0 14 1 0 12 1 0 22 3 2 22 2 0 14 1 0 9 2 0 10 6 0 6 3 0 11 3 0 16 15 14 29 1 0 16 2 1 50 19 13 13 3 2 8 1 0 19 5 0 15 3 0 453 0 3 10 5 6 110 0 1 19 1 2 293 1 0 34 1 0 242 1 8 187 1 0 192 2 5 47 1 6 60 0 1 339 chain 12621 chr14 107349540 + 76267719 76267908 L1MA3 4352 - 44 230 149765 20 13 11 16 0 1 25 4 0 31 0 2 80 chain 3534 chr14 107349540 + 76292699 76292745 L1MB2 1706 + 1646 1693 214803 15 0 1 31 chain 18848 chr14 107349540 + 76306587 76306847 L1PA8 5853 - 3 265 130521 89 2 1 18 3 2 52 1 0 9 1 0 26 0 8 37 2 0 20 chain 336685 chr14 107349540 + 76386616 76390632 L1PA6 6164 - 2 4071 11977 9 0 4 85 0 19 69 5 1 70 0 1 130 8 7 20 0 1 142 0 24 532 0 1 324 2 0 205 0 1 146 22 14 58 0 1 80 0 2 399 1 4 433 0 22 160 2 1 611 0 4 221 15 5 22 4 0 241 chain 150863 chr14 107349540 + 76390632 76392402 SVA_D 2077 - 5 2035 24493 590 0 98 56 0 78 212 0 2 33 0 1 48 1 38 20 0 40 131 37 0 75 0 40 384 0 1 183 chain 29012 chr14 107349540 + 76392477 76392830 L1P2 5180 - 2831 3164 88930 22 20 0 311 chain 4194 chr14 107349540 + 76396763 76396811 Tigger4a 237 - 189 237 204643 48 chain 11688 chr14 107349540 + 76410388 76410529 MER50 708 + 549 690 153526 141 chain 8370 chr14 107349540 + 76438583 76438698 MER85 139 + 0 126 169022 91 1 12 23 chain 3737 chr14 107349540 + 76442560 76442717 MER5B 177 + 15 175 211355 37 97 100 23 chain 15827 chr14 107349540 + 76490254 76490451 MER107 203 + 0 203 138865 162 0 6 35 chain 19237 chr14 107349540 + 76491569 76491924 L1PA13 3608 + 3167 3483 129418 69 42 24 13 2 0 62 1 0 61 2 0 25 21 10 13 2 0 4 2 0 20 1 0 15 chain 3826 chr14 107349540 + 76531914 76532069 L1ME1 1623 - 50 177 209981 15 28 26 11 19 0 13 31 24 38 chain 5364 chr14 107349540 + 76575198 76575266 MSTB1 431 - 1 70 191384 11 0 1 57 chain 5292 chr14 107349540 + 76631871 76631933 L1PA8 5853 + 5785 5847 192094 62 chain 131485 chr14 107349540 + 76654360 76656247 L1MA2 4263 - 152 2036 27756 6 1 0 47 7 0 33 0 1 49 22 20 98 1 0 51 20 17 27 10 14 86 1 0 33 0 3 30 7 12 17 8 7 171 1 2 117 3 4 356 1 2 128 6 5 63 11 10 46 17 15 92 10 12 4 0 1 4 1 0 185 8 7 109 chain 12819 chr14 107349540 + 76658205 76658508 L1MA5A 2387 - 92 350 148983 35 51 28 17 3 0 35 1 0 22 5 3 25 2 1 22 1 0 31 31 17 22 chain 72882 chr14 107349540 + 76681474 76682268 L1PA2 6032 + 5234 6032 47079 740 0 4 54 chain 120130 chr14 107349540 + 76705991 76708055 L1PB2 3958 + 2128 3837 31014 149 6 0 6 16 22 178 1 2 6 352 0 52 9 16 126 2 5 54 8 9 171 1 0 295 0 1 89 2 0 51 17 14 38 0 2 24 2 0 9 8 4 94 1 0 73 2 1 51 16 15 68 2 0 21 2 1 62 chain 34758 chr14 107349540 + 76720703 76721111 MER57A1 433 - 24 432 76529 408 chain 3603 chr14 107349540 + 76748809 76748851 L1ME1 1623 + 608 650 213596 42 chain 11783 chr14 107349540 + 76788118 76788243 AluYk11 308 + 170 295 153122 125 chain 6353 chr14 107349540 + 76799980 76800061 MER33 330 - 79 161 182354 60 0 1 21 chain 23160 chr14 107349540 + 76810640 76811409 L1PB1 5432 - 14 450 114852 14 1 0 13 1 0 21 1 0 23 3 1 14 8 5 18 15 6 8 3 0 14 1 0 44 1 0 16 2 1 46 309 0 5 2 0 11 16 11 9 1 0 24 1 0 9 2 3 50 1 0 5 3 11 54 chain 48481 chr14 107349540 + 76811409 76812055 L1PB1 5432 + 4341 4984 60129 26 8 9 237 11 8 23 1 0 59 0 2 63 3 1 70 3 4 95 1 0 46 chain 17842 chr14 107349540 + 76867850 76868119 Tigger3a 397 + 1 336 133272 54 0 1 18 34 93 7 0 6 156 chain 9177 chr14 107349540 + 76977245 76977382 MER53 195 + 24 181 164670 73 0 3 5 11 28 48 chain 3108 chr14 107349540 + 76979210 76979250 ERV3-16A3_LTR 481 - 23 68 222782 24 0 5 16 chain 4362 chr14 107349540 + 76991308 76991360 MER5A1 166 - 27 79 202424 52 chain 107718 chr14 107349540 + 77002330 77003658 LTR12C 1709 - 0 1709 34796 141 0 1 65 0 101 173 0 4 106 4 2 4 1 0 76 0 278 180 14 13 127 0 1 437 chain 5390 chr14 107349540 + 77016288 77016363 MER57E1 380 - 293 367 191091 18 0 1 23 2 0 32 chain 39223 chr14 107349540 + 77027610 77028627 MLT2A2 560 + 0 549 70423 14 1 0 175 1 0 23 484 6 12 19 20 156 0 11 132 chain 4150 chr14 107349540 + 77042273 77042398 MLT1C 463 - 338 463 205241 33 48 47 24 3 4 17 chain 21834 chr14 107349540 + 77045682 77045974 AluSz6 309 + 10 309 120875 60 14 23 207 2 0 9 chain 3507 chr14 107349540 + 77048571 77048609 tRNA-Gly-GGA 38 - 0 38 215261 38 chain 6067 chr14 107349540 + 77054325 77054397 MLT2C2 476 + 0 72 184692 72 chain 10051 chr14 107349540 + 77063740 77063899 MSTA 426 - 238 383 160314 60 15 0 24 5 6 55 chain 25290 chr14 107349540 + 77067737 77068151 MSTA 426 - 0 426 103270 190 2 0 7 21 13 72 44 65 37 3 4 38 chain 46188 chr14 107349540 + 77075492 77076027 L1PA5 6144 + 5586 6122 61858 406 4 5 125 chain 11233 chr14 107349540 + 77122945 77123072 MER61-int 3695 + 1483 1610 155299 127 chain 12388 chr14 107349540 + 77145635 77146020 MER41C 542 + 11 396 77060 38 0 1 116 23 23 9 0 1 4 1 0 25 5 0 82 5 7 18 0 2 59 chain 45146 chr14 107349540 + 77146033 77146585 MER41A 554 + 2 554 62872 141 1 0 59 0 1 351 chain 3829 chr14 107349540 + 77146585 77146704 MER41C 542 + 414 533 77060 119 chain 37157 chr14 107349540 + 77147057 77147537 LTR10F 562 + 0 562 73303 40 0 2 63 5 90 36 3 0 175 2 1 91 3 2 62 chain 13308 chr14 107349540 + 77152194 77152356 L1PA4 6152 + 5994 6152 147053 152 4 0 6 chain 25042 chr14 107349540 + 77158551 77158855 AluSq10 312 + 8 312 104589 304 chain 1494 chr14 107349540 + 77172856 77172897 LTR12C 1709 - 942 1024 209973 18 1 42 22 chain 12183 chr14 107349540 + 77172897 77173125 LTR12C 1709 - 623 777 151483 33 74 0 121 chain 8693 chr14 107349540 + 77173553 77173722 Tigger3 1187 - 302 471 167235 78 25 31 22 16 10 28 chain 133408 chr14 107349540 + 77200344 77201857 SVA_D 2077 - 0 2067 27340 136 0 20 476 0 2 37 1 490 192 0 37 307 0 4 334 4 6 26 chain 541061 chr14 107349540 + 77210630 77218607 L1PA4 6152 + 9 6140 2659 763 0 1 524 10 0 559 1 0 1409 0 2 808 1 0 281 0 4 461 0 1 203 1 0 248 1840 0 106 1 0 625 1 0 34 0 1 101 chain 154504 chr14 107349540 + 77215926 77217714 SVA_D 2077 + 0 2062 24046 13 5 0 12 5 0 763 40 0 115 4 0 10 8 7 21 0 103 132 0 225 637 0 1 23 chain 95524 chr14 107349540 + 77287917 77289076 SVA_D 2077 + 963 2073 37952 28 1 0 45 0 2 144 98 0 170 0 49 458 1 0 214 chain 5435 chr14 107349540 + 77288138 77288233 SVA_D 2077 + 1007 1055 75039 29 0 2 15 50 1 1 chain 4336 chr14 107349540 + 77288182 77288232 SVA_D 2077 + 1356 1406 79420 32 0 1 4 10 9 4 chain 6388 chr14 107349540 + 77291670 77291782 FordPrefect_a 431 + 323 431 182123 63 17 16 19 3 0 10 chain 26796 chr14 107349540 + 77306923 77307217 AluYf4 310 - 8 302 96996 294 chain 13500 chr14 107349540 + 77314471 77314624 L1PA4 6152 + 5990 6143 146360 153 chain 24498 chr14 107349540 + 77318013 77318295 AluSc 308 - 15 297 107548 282 chain 25032 chr14 107349540 + 77325598 77325894 AluSp 311 + 3 299 104626 296 chain 23686 chr14 107349540 + 77343642 77343939 AluYc3 301 + 0 300 112116 24 1 0 41 0 3 45 1 2 185 chain 44992 chr14 107349540 + 77350322 77350861 MER41A 554 - 0 541 63063 126 0 1 333 0 1 80 chain 123841 chr14 107349540 + 77363785 77365242 SVA_B 1603 - 0 1603 29755 149 8 0 400 0 37 50 4 0 41 6 0 44 0 80 100 1 41 591 14 1 18 11 31 20 chain 22749 chr14 107349540 + 77366216 77366486 AluSp 311 + 8 278 116830 270 chain 23962 chr14 107349540 + 77374520 77374806 AluY 311 + 8 287 110554 118 7 0 161 chain 3295 chr14 107349540 + 77378695 77378782 MIR 256 - 125 221 219075 33 35 44 19 chain 5490 chr14 107349540 + 77397699 77397800 MLT1C 463 - 304 400 190133 11 1 3 5 1 0 12 14 8 57 chain 10086 chr14 107349540 + 77448651 77448798 FAM 185 + 16 164 160151 34 19 20 94 chain 7335 chr14 107349540 + 77455976 77456183 L1MC1 2226 - 42 274 175191 31 82 112 49 2 0 9 9 6 25 chain 26346 chr14 107349540 + 77460402 77460703 AluSp 311 - 10 311 98629 301 chain 22762 chr14 107349540 + 77467968 77468265 AluSp 311 + 0 289 116770 53 9 7 61 6 0 168 chain 20272 chr14 107349540 + 77538919 77539163 AluSp 311 + 48 292 126306 244 chain 21693 chr14 107349540 + 77558013 77558438 LTR8A 794 - 15 445 121417 81 20 21 5 1 0 16 32 33 77 10 9 10 0 5 12 2 0 9 40 40 65 0 2 45 chain 25029 chr14 107349540 + 77558457 77558761 AluSp 311 - 7 311 104644 172 1 0 34 0 1 97 chain 3507 chr14 107349540 + 77615026 77615064 MLT1J 494 - 332 370 215244 38 chain 3676 chr14 107349540 + 77643412 77643455 MER47A 366 - 167 210 212298 43 chain 22459 chr14 107349540 + 77646734 77647002 AluY 311 + 0 263 118202 4 0 1 118 1 0 3 5 0 137 chain 5697 chr14 107349540 + 77714273 77714346 Charlie4a 502 - 393 467 188141 50 0 1 23 chain 20160 chr14 107349540 + 77760534 77761172 THE1B 368 + 0 368 126644 15 3 1 24 9 14 36 321 62 12 13 0 129 1 0 75 chain 21738 chr14 107349540 + 77866685 77867003 MER4A 717 - 0 310 121247 9 1 0 53 11 9 146 11 6 87 chain 7698 chr14 107349540 + 77870247 77870336 5S 121 - 31 120 172944 89 chain 58086 chr14 107349540 + 77882605 77883249 SVA_D 2077 - 58 928 53934 19 3 4 454 0 225 168 chain 15587 chr14 107349540 + 77965858 77966127 AluSz 310 + 9 253 139622 70 0 1 67 68 42 64 chain 24254 chr14 107349540 + 77979954 77980256 AluSp 311 + 0 300 108918 19 8 6 275 chain 24006 chr14 107349540 + 77983315 77983603 AluSp 311 + 8 299 110296 181 0 3 107 chain 21728 chr14 107349540 + 78013083 78013352 AluSp 311 - 17 291 121288 81 3 9 76 1 0 108 chain 10674 chr14 107349540 + 78035266 78035394 MER85 139 - 0 139 157508 34 0 11 94 chain 24898 chr14 107349540 + 78067485 78067903 LTR7B 505 + 0 490 105356 105 0 10 69 35 11 14 1 89 67 1 0 21 5 7 48 14 13 23 3 1 12 chain 29730 chr14 107349540 + 78067964 78068447 HERVH-int 3825 + 45 785 85727 12 17 21 255 1 0 66 22 21 26 49 305 10 3 4 15 2 0 5 chain 4641 chr14 107349540 + 78073683 78073789 MADE1 96 - 1 93 199168 23 15 7 20 14 8 34 chain 80609 chr14 107349540 + 78101622 78102588 LTR5_Hs 974 - 3 974 43338 314 0 1 193 0 4 459 chain 80933 chr14 107349540 + 78127740 78128708 LTR5_Hs 974 - 0 974 43225 104 2 0 36 8 15 116 1 2 132 1 0 283 0 1 285 chain 19543 chr14 107349540 + 78182727 78183007 AluSp 311 + 20 304 128535 36 2 1 75 10 6 56 11 20 90 chain 25502 chr14 107349540 + 78192295 78192631 L1MA4 2864 - 1320 1655 102216 125 6 5 205 chain 126915 chr14 107349540 + 78213288 78214757 SVA_B 1603 + 50 1591 28837 146 1 0 438 0 40 163 5 41 41 5 1 355 0 1 315 chain 25098 chr14 107349540 + 78239206 78239498 AluSp 311 + 5 297 104302 292 chain 22589 chr14 107349540 + 78240313 78240675 THE1B 368 - 0 368 117638 125 13 11 18 0 1 4 1 0 4 38 9 12 0 37 147 chain 15047 chr14 107349540 + 78244862 78245088 THE1D 372 + 103 330 141184 63 6 10 13 3 0 5 5 6 24 1 0 106 chain 73430 chr14 107349540 + 78261016 78261977 LTR5_Hs 974 - 0 974 46824 103 2 9 7 9 0 21 8 15 67 8 0 7 0 8 81 1 0 188 0 1 177 0 1 122 1 0 39 5 13 115 chain 28051 chr14 107349540 + 78273410 78273710 AluYa5 310 - 10 310 92825 300 chain 9356 chr14 107349540 + 78287375 78287485 HY1 111 - 1 111 163771 110 chain 2883 chr14 107349540 + 78347304 78347334 MER117 194 + 47 77 227322 30 chain 4498 chr14 107349540 + 78355147 78355201 MER44A 345 - 31 85 200810 54 chain 4333 chr14 107349540 + 78366068 78366119 Tigger9b 617 - 70 121 202797 51 chain 19062 chr14 107349540 + 78381541 78381774 L1PA4 6152 - 14 240 129931 142 1 0 5 6 0 79 chain 21037 chr14 107349540 + 78381774 78382008 L1PA4 6152 + 5662 5896 123776 234 chain 92062 chr14 107349540 + 78385563 78386923 L1PB1 5432 - 106 1436 38949 30 1 0 8 8 7 22 7 1 22 26 24 44 18 12 10 1 0 8 1 0 14 23 21 93 0 4 50 0 1 148 1 2 179 4 1 54 12 13 15 18 0 233 0 1 90 11 14 209 chain 4981 chr14 107349540 + 78408172 78408226 MLT1B 390 + 290 344 195346 54 chain 23728 chr14 107349540 + 78412913 78413279 THE1D 372 + 0 372 111892 20 6 7 4 1 0 10 34 39 106 0 2 7 0 1 31 1 0 133 1 0 12 chain 8955 chr14 107349540 + 78420028 78420156 Charlie13b 329 - 120 248 165855 19 1 2 4 1 0 103 chain 11693 chr14 107349540 + 78421447 78421581 L1PA5 6144 - 5 139 153512 134 chain 26370 chr14 107349540 + 78426011 78426371 THE1B 368 + 0 368 98531 44 0 15 113 10 9 10 7 1 176 chain 7698 chr14 107349540 + 78450458 78450581 MER5A1 166 + 0 125 172949 17 6 8 57 2 3 31 1 0 9 chain 23747 chr14 107349540 + 78452534 78452835 AluSg7 307 + 0 295 111794 106 10 3 17 0 1 168 chain 134648 chr14 107349540 + 78459367 78460896 SVA_D 2077 - 0 2077 27086 52 2 0 25 3 4 551 1 0 35 5 494 191 0 37 479 1 0 143 1 26 40 chain 76398 chr14 107349540 + 78467246 78468265 MER11A 1151 + 0 1151 45266 70 0 3 12 0 91 24 1 0 94 4 0 149 0 1 90 12 13 126 16 18 54 0 4 70 6 40 61 0 1 230 chain 13292 chr14 107349540 + 78468704 78468869 THE1B 368 + 192 356 147123 101 1 0 63 chain 14852 chr14 107349540 + 78475804 78476125 L1MB5 1630 - 11 335 141775 5 1 0 13 1 0 18 101 108 83 1 0 7 4 3 87 chain 123828 chr14 107349540 + 78479378 78480889 LTR12C 1709 - 0 1709 29759 362 0 2 25 5 1 91 0 4 70 0 47 83 0 41 72 3 112 445 1 0 354 chain 24128 chr14 107349540 + 78486191 78486547 THE1B 368 - 1 368 109596 74 1 0 24 3 5 62 4 0 28 8 7 103 5 20 44 chain 17090 chr14 107349540 + 78503370 78503695 LTR45 522 - 181 522 135350 187 99 115 39 chain 11073 chr14 107349540 + 78515140 78515274 L1PA5 6144 - 3 134 155921 6 4 0 119 0 1 5 chain 145770 chr14 107349540 + 78516841 78518638 L1PA8 5853 - 0 1766 25212 52 24 1 40 1 0 21 2 1 48 4 3 8 2 1 71 2 0 43 1 0 145 0 1 409 2 0 335 0 1 70 1 0 516 chain 14555 chr14 107349540 + 78530106 78530322 MER30 238 - 0 206 142721 48 3 0 58 13 12 6 6 0 82 chain 13364 chr14 107349540 + 78531578 78531759 MLT1A1-int 1737 + 1517 1701 146837 81 6 9 94 chain 6246 chr14 107349540 + 78538422 78538517 MLT1B 390 - 17 110 183195 24 1 0 30 0 1 16 4 2 20 chain 109173 chr14 107349540 + 78562912 78564401 THE1B-int 1605 - 0 1585 34400 223 6 5 417 22 36 59 10 12 113 40 55 171 53 117 156 0 1 201 0 1 18 chain 6587 chr14 107349540 + 78584741 78584818 Tigger1 2417 + 1394 1471 180566 77 chain 10907 chr14 107349540 + 78594001 78594121 L1PA5 6144 - 10 130 156563 120 chain 10311 chr14 107349540 + 78621781 78621905 MER85 139 - 0 134 159082 40 0 10 84 chain 7082 chr14 107349540 + 78644175 78644257 5S 121 - 32 114 176872 82 chain 22943 chr14 107349540 + 78648823 78649113 AluSp 311 - 23 311 115895 135 0 1 14 9 6 132 chain 3908 chr14 107349540 + 78675008 78675060 MIRb 242 + 66 127 208728 45 0 9 7 chain 92657 chr14 107349540 + 78690620 78691976 L1PA3long 6157 - 0 1032 38769 464 324 0 568 chain 29499 chr14 107349540 + 78691093 78691408 AluYb8 318 - 3 318 86640 315 chain 22097 chr14 107349540 + 78726843 78727197 THE1B 368 + 0 368 119802 13 2 0 21 0 7 131 2 1 15 45 55 125 chain 30558 chr14 107349540 + 78828245 78828563 AluYb8 318 + 0 318 83301 318 chain 8864 chr14 107349540 + 78846577 78846671 AluYb8 318 + 215 309 166310 94 chain 520569 chr14 107349540 + 79002955 79009165 L1PA6 6164 - 2 6164 5099 156 2 3 614 5 1 44 0 1 34 0 1 665 1 0 18 2 0 1314 0 5 116 0 1 167 0 3 685 8 0 156 1 0 496 0 1 91 0 3 299 0 1 263 10 9 217 34 0 231 1 0 32 31 17 273 1 0 7 0 2 236 chain 2510 chr14 107349540 + 79025177 79025208 MIRb 242 - 34 65 233005 31 chain 6673 chr14 107349540 + 79038894 79038979 MER30 238 - 0 82 179880 39 3 0 43 chain 13223 chr14 107349540 + 79041247 79041578 THE1D 372 + 0 338 147382 37 67 65 64 61 78 70 8 0 24 chain 5891 chr14 107349540 + 79084213 79084291 MADE1 96 - 0 94 186261 37 1 17 40 chain 24893 chr14 107349540 + 79117875 79118253 THE1B 368 - 0 368 105393 56 1 2 4 1 0 92 0 1 4 12 17 9 1 0 4 0 1 9 2 0 86 18 4 79 chain 29201 chr14 107349540 + 79131537 79131907 THE1C 375 - 0 368 88044 25 1 0 169 1 0 174 chain 41857 chr14 107349540 + 79136206 79136714 L1PA7 6471 - 2 510 66820 508 chain 37509 chr14 107349540 + 79173922 79174489 L1PB1 5432 - 12 551 72802 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 19 10 1 11 3 0 59 1 0 18 1 0 52 2 0 9 6 2 9 1 0 9 1 0 21 0 1 11 1 2 222 chain 21860 chr14 107349540 + 79192539 79192801 L1PA7 6471 - 5 268 120781 167 1 2 94 chain 18066 chr14 107349540 + 79226377 79226663 AluSp 311 - 5 290 132683 64 49 46 34 11 13 128 chain 9325 chr14 107349540 + 79238958 79239072 MER5A1 166 - 6 120 163922 114 chain 10014 chr14 107349540 + 79241736 79241923 MER30 238 + 31 238 160512 50 1 2 10 46 65 80 chain 16715 chr14 107349540 + 79267680 79268011 THE1D 372 - 34 372 136355 11 0 1 76 26 33 21 0 1 4 5 3 5 1 0 49 1 11 37 44 35 51 chain 22750 chr14 107349540 + 79268633 79268887 L1PA4 6152 + 5898 6152 116826 254 chain 10094 chr14 107349540 + 79291088 79291300 L1MA3 4352 + 4145 4322 160109 59 9 10 22 4 0 22 2 0 24 1 0 4 3 2 23 28 0 11 chain 22962 chr14 107349540 + 79297624 79297904 AluSg7 307 + 16 307 115796 30 0 10 75 0 1 175 chain 92794 chr14 107349540 + 79308568 79309639 MER11C 1089 - 16 1089 38715 145 0 1 327 0 1 599 chain 12428 chr14 107349540 + 79319238 79319395 L1MA3 4352 - 317 476 150537 29 0 2 128 chain 24272 chr14 107349540 + 79319412 79319699 L1PA5 6144 - 2 287 108838 8 2 0 277 chain 29009 chr14 107349540 + 79346300 79346609 AluYa5 310 + 0 308 88943 132 1 0 176 chain 111622 chr14 107349540 + 79347586 79349177 THE1C-int 1605 + 0 1605 33770 16 1 2 108 0 55 259 89 17 110 4 7 56 8 11 79 6 22 134 0 1 6 1 0 269 1 2 58 0 1 104 0 4 108 0 1 5 0 1 107 0 1 5 9 8 48 chain 29978 chr14 107349540 + 79378273 79378597 L1PA4 6152 - 9 333 84878 324 chain 75969 chr14 107349540 + 79394658 79395542 L1PA4 6152 - 14 900 45500 428 1 0 115 0 3 340 chain 29195 chr14 107349540 + 79400972 79401298 L1PA4 6152 + 5810 6136 88073 326 chain 28362 chr14 107349540 + 79405185 79405487 AluYf4 310 - 8 310 91725 302 chain 23624 chr14 107349540 + 79453094 79453389 AluSc5 308 + 11 306 112446 120 2 0 141 0 2 32 chain 22226 chr14 107349540 + 79486637 79486907 AluSp 311 - 41 311 119225 270 chain 17380 chr14 107349540 + 79514814 79515085 Tigger1 2417 - 90 346 134563 76 12 10 64 15 6 11 4 0 89 chain 29309 chr14 107349540 + 79515085 79515395 AluYg6 310 + 0 310 87522 310 chain 28853 chr14 107349540 + 79520330 79520651 L1PA4 6152 + 5818 6139 89656 321 chain 20363 chr14 107349540 + 79524990 79525379 THE1D 372 + 0 372 126020 76 15 0 3 4 0 49 0 4 31 87 86 91 1 0 32 chain 25186 chr14 107349540 + 79533636 79534005 L1P3 4156 - 20 393 103820 20 1 0 9 2 0 179 14 15 20 1 0 66 1 2 37 1 7 18 chain 17360 chr14 107349540 + 79537588 79537792 L1PA7 6471 - 11 215 134627 204 chain 15863 chr14 107349540 + 79537928 79538281 L1MA3 4352 + 4001 4325 138766 56 2 0 30 43 18 8 1 0 50 29 28 36 4 8 23 2 0 24 1 0 24 9 8 11 chain 3771 chr14 107349540 + 79579422 79579563 MER20 218 - 72 212 210798 19 59 60 35 16 14 12 chain 5420 chr14 107349540 + 79580460 79580602 MER20 218 + 43 156 190801 4 1 0 13 59 31 65 chain 545879 chr14 107349540 + 79592521 79598545 L1PA3long 6157 - 1 6156 1961 147 0 1 4765 0 1 338 0 128 622 0 1 152 chain 33612 chr14 107349540 + 79628488 79628859 L1PA3long 6157 - 1 372 78224 371 chain 73673 chr14 107349540 + 79655065 79655880 L1PA3long 6157 + 5332 6147 46694 815 chain 26916 chr14 107349540 + 79664042 79664440 Tigger1 2417 - 276 688 96573 50 29 47 217 0 2 70 7 1 25 chain 33832 chr14 107349540 + 79668750 79669397 L1PB1 5432 - 14 649 77889 13 5 4 10 1 0 13 9 8 20 6 4 14 8 5 19 14 5 7 3 0 11 20 19 29 1 0 16 2 1 15 1 2 34 2 0 11 16 11 9 1 0 24 1 0 11 1 0 50 2 1 153 0 21 95 chain 135926 chr14 107349540 + 79687104 79688683 L1PA7 6471 - 6 1586 26851 149 3 4 610 0 2 79 1 0 18 0 1 5 1 0 381 1 0 331 chain 6421 chr14 107349540 + 79690972 79691343 MLT1C 463 + 57 463 181852 25 45 74 5 3 0 10 4 8 14 2 0 9 1 0 6 43 11 19 131 171 54 chain 18839 chr14 107349540 + 79768889 79769231 THE1D 372 + 0 356 130550 128 1 5 11 85 95 117 chain 9664 chr14 107349540 + 79769249 79769366 MSTB 430 - 306 423 162273 117 chain 480389 chr14 107349540 + 79775276 79780404 L1HS 6032 - 3 5131 7718 5128 chain 84229 chr14 107349540 + 79780404 79781286 L1HS 6032 + 10 892 41779 882 chain 15516 chr14 107349540 + 79828495 79828671 L1PA5 6144 - 1 177 139837 176 chain 29861 chr14 107349540 + 79831780 79832096 AluYb8 318 + 0 316 85238 316 chain 49198 chr14 107349540 + 79846542 79847083 L1PA3long 6157 - 0 541 59600 541 chain 11506 chr14 107349540 + 79847083 79847204 L1PA3long 6157 + 5493 5614 154279 121 chain 36460 chr14 107349540 + 79851406 79851805 L1PA2 6032 - 4 404 74285 147 1 2 251 chain 207457 chr14 107349540 + 79852103 79854455 L1PA5 6144 + 3786 6143 18685 164 0 2 418 0 3 1315 2 1 185 11 12 257 chain 45542 chr14 107349540 + 79858336 79858916 L1PA7 6471 - 1 580 62469 5 2 0 149 19 18 196 1 3 208 chain 9886 chr14 107349540 + 79858916 79859031 L1PA7 6471 + 5691 5807 161148 18 0 1 97 chain 31282 chr14 107349540 + 79986646 79987021 L1PA7 6471 - 7 388 82019 190 0 1 36 0 4 16 0 1 133 chain 32109 chr14 107349540 + 79987021 79987391 L1PA7 6471 + 5720 6091 80673 134 0 1 236 chain 36565 chr14 107349540 + 79995378 79995853 LTR2B 499 - 0 490 74152 182 1 0 8 0 1 178 0 19 37 3 0 60 1 0 5 chain 111923 chr14 107349540 + 80003644 80004913 L1PA4 6152 - 9 1269 33688 139 0 1 111 1 0 899 9 0 110 chain 24941 chr14 107349540 + 80012203 80012558 THE1B 368 + 0 368 105103 44 0 15 107 19 17 9 0 2 20 5 4 75 1 0 75 chain 44253 chr14 107349540 + 80014382 80014896 L1PA7 6471 - 1 514 63876 159 1 0 354 chain 3093 chr14 107349540 + 80046671 80046704 MER97a 834 - 698 731 223058 33 chain 22210 chr14 107349540 + 80056449 80056756 THE1B 368 + 7 311 119303 165 4 3 25 2 0 28 1 3 71 2 0 9 chain 24194 chr14 107349540 + 80062811 80063245 LTR19A 502 - 0 492 109256 61 13 11 28 5 4 47 10 9 64 30 104 21 11 0 115 5 4 24 chain 22806 chr14 107349540 + 80076168 80076439 L1PA7 6471 + 6187 6458 116548 271 chain 6012 chr14 107349540 + 80136057 80136131 MER5A1 166 + 14 88 185121 74 chain 40301 chr14 107349540 + 80172786 80173367 LTR14 556 + 0 556 68878 25 3 0 144 1 0 96 19 0 87 2 1 64 7 8 36 1 0 4 1 0 91 chain 23897 chr14 107349540 + 80202880 80203189 LTR14A 344 - 0 342 110918 37 17 18 120 0 8 16 0 24 119 chain 119200 chr14 107349540 + 80217345 80218640 L1PA3long 6157 - 1431 2726 31338 1295 chain 127444 chr14 107349540 + 80218657 80220058 L1PA3long 6157 + 4742 6142 28703 558 1 0 842 chain 5788 chr14 107349540 + 80221540 80221612 MER2 342 - 129 201 187275 72 chain 45056 chr14 107349540 + 80229214 80229792 L1PA7 6471 - 6 539 62986 6 4 0 174 2 0 271 39 0 82 chain 539768 chr14 107349540 + 80234103 80240130 L1PA3long 6157 + 0 6156 2854 153 1 2 621 0 128 5143 0 3 5 14 11 90 chain 23837 chr14 107349540 + 80245463 80245755 AluSp 311 - 19 311 111268 148 1 0 10 1 2 132 chain 43823 chr14 107349540 + 80255702 80256272 MER41A 554 - 0 554 64422 185 0 4 69 30 10 286 chain 11660 chr14 107349540 + 80257302 80257464 MSTB 430 - 243 423 153635 31 7 24 61 0 1 63 chain 23881 chr14 107349540 + 80259492 80259786 AluY 311 + 0 311 111014 133 2 0 11 1 20 147 chain 8891 chr14 107349540 + 80358727 80358831 MER4-int 2692 - 0 104 166181 104 chain 70440 chr14 107349540 + 80372204 80372973 L1PA2 6032 + 5256 6025 48189 769 chain 13566 chr14 107349540 + 80388542 80388726 L1PB4 2604 - 34 218 146104 18 1 0 135 1 2 29 chain 7215 chr14 107349540 + 80394165 80394426 MLT1A0 366 - 17 337 175973 58 145 190 5 2 0 12 0 16 39 chain 163161 chr14 107349540 + 80400149 80401961 L1PA3long 6157 - 1519 3334 22926 568 0 1 904 0 2 340 chain 109265 chr14 107349540 + 80401961 80403155 L1PA3long 6157 + 4693 5887 34382 1194 chain 22763 chr14 107349540 + 80403166 80403423 L1PA3long 6157 + 5899 6156 116766 257 chain 342022 chr14 107349540 + 80420881 80425523 L1PA11 4918 + 13 4628 11830 29 2 0 29 0 1 6 2 0 6 25 23 8 0 2 11 2 0 53 1 0 29 12 9 226 0 1 28 1 0 383 1 0 149 0 1 51 7 1 404 0 1 349 0 1 368 31 32 46 0 4 17 0 4 218 0 1 20 5 0 23 1 0 171 0 3 945 17 20 374 1 0 68 4 6 189 8 3 67 2 1 13 2 0 68 2 0 12 2 1 18 119 105 17 chain 23450 chr14 107349540 + 80465382 80465670 AluY 311 + 11 299 113380 83 5 4 34 0 1 166 chain 103615 chr14 107349540 + 80476817 80477947 L1PA3long 6157 - 0 1129 35827 978 1 0 151 chain 69349 chr14 107349540 + 80484744 80485577 L1PA7 6471 - 4 867 48660 202 0 30 22 1 0 61 0 1 10 0 1 256 0 1 189 2 1 72 1 0 17 chain 468656 chr14 107349540 + 80494766 80500000 L1PA3long 6157 + 844 6108 8085 318 0 3 135 0 22 552 0 1 635 0 1 160 0 1 543 1 0 2087 1 2 602 0 1 102 0 1 98 chain 512212 chr14 107349540 + 80505149 80511320 L1PA6 6164 + 0 6156 5952 410 2 3 140 0 1 71 0 1 361 0 1 1052 1 2 292 1 0 222 20 4 347 1 13 269 0 1 116 7 10 385 1 3 117 1 2 534 1 0 5 0 4 372 2 0 102 5 4 327 30 4 144 0 4 833 chain 12244 chr14 107349540 + 80520242 80520481 MER30 238 - 0 238 151235 39 8 0 7 3 0 69 7 17 42 22 0 10 17 39 15 chain 49604 chr14 107349540 + 80525661 80526433 L1PB2 3958 + 3025 3774 59318 61 7 8 213 2 0 56 17 11 26 0 2 12 10 6 12 8 6 13 5 0 59 2 0 35 1 0 73 1 0 60 7 6 70 2 0 20 chain 19901 chr14 107349540 + 80530100 80530466 THE1C 375 - 2 375 127479 141 5 8 38 1 0 47 91 96 43 chain 554836 chr14 107349540 + 80554871 80561021 L1PA3long 6157 + 0 6156 843 557 0 1 631 1 4 679 0 1 637 0 1 704 1 0 1456 0 1 1484 chain 51973 chr14 107349540 + 80562926 80563597 L1PA8 5853 + 5187 5853 57635 80 0 1 292 8 7 41 2 0 70 2 1 61 2 1 19 1 0 93 chain 12264 chr14 107349540 + 80638376 80638568 MER30 238 + 27 238 151136 62 0 8 14 5 0 9 8 27 48 4 1 42 chain 24303 chr14 107349540 + 80657018 80657323 AluY 311 + 0 299 108641 118 3 0 15 1 0 97 1 2 56 3 0 11 chain 33751 chr14 107349540 + 80691152 80691589 MLT2A1 477 - 0 477 78021 53 3 39 62 1 0 150 1 5 25 0 1 142 chain 460312 chr14 107349540 + 80691589 80697146 HERVL-int 5654 - 0 5627 8390 141 0 1 77 0 1 54 0 2 14 0 3 136 2 0 127 14 57 22 2 10 704 0 2 350 0 4 207 0 3 6 12 9 1455 1 2 452 2 1 696 1 0 78 0 2 163 0 5 452 0 2 389 chain 31710 chr14 107349540 + 80697173 80697599 MLT2A1 477 - 0 477 81316 47 7 47 10 4 11 39 1 0 149 1 5 26 0 1 142 chain 12469 chr14 107349540 + 80702330 80702498 THE1B 368 - 199 368 150381 52 5 6 111 chain 15340 chr14 107349540 + 80704359 80704727 THE1B 368 - 0 368 140367 56 13 10 51 69 75 21 8 4 10 34 33 49 6 8 51 chain 475231 chr14 107349540 + 80712028 80717384 L1PA4 6152 - 1 5361 7876 192 0 1 1086 0 2 1693 2 1 5 1 0 799 0 1 58 1 0 1077 1 0 77 0 3 259 1 2 104 chain 24959 chr14 107349540 + 80719321 80719655 THE1C 375 + 0 334 105012 116 1 0 60 9 10 148 chain 58633 chr14 107349540 + 80750391 80751092 L1PA7 6471 - 3 704 53621 146 0 7 7 8 1 540 chain 132668 chr14 107349540 + 80752364 80753977 SVA_D 2077 + 58 2077 27484 495 39 0 17 46 10 106 0 40 152 0 132 24 1 2 17 0 1 48 0 304 38 7 11 30 1 0 592 chain 2423 chr14 107349540 + 80752915 80752961 SVA_D 2077 + 494 540 175296 46 chain 52956 chr14 107349540 + 80763118 80763765 L1PA6 6164 - 828 1474 57044 20 0 4 141 6 0 179 7 0 8 0 7 275 0 1 11 chain 71981 chr14 107349540 + 80763784 80764616 L1PA6 6164 + 5327 6154 47482 506 0 1 59 7 1 260 chain 8257 chr14 107349540 + 80784328 80784496 L1PB1 5432 - 226 390 169637 37 2 0 10 2 0 3 2 0 14 1 0 8 1 0 4 28 32 56 chain 70190 chr14 107349540 + 80795411 80796242 L1PA7 6471 + 5640 6470 48311 784 1 0 46 chain 28435 chr14 107349540 + 80799591 80799945 THE1A 353 - 0 353 91442 243 2 1 109 chain 129606 chr14 107349540 + 80799945 80801525 THE1A-int 1579 - 0 1579 28176 232 12 11 812 3 4 22 3 0 160 0 2 336 chain 64782 chr14 107349540 + 80807056 80807879 L1PA7 6471 + 5646 6467 50664 57 0 1 315 1 0 256 1 49 8 48 0 127 2 0 8 chain 136034 chr14 107349540 + 80833846 80835359 L1PA4 6152 - 750 2262 26826 1358 2 1 153 chain 66436 chr14 107349540 + 80835359 80836104 L1PA4 6152 + 5397 6143 49734 502 0 1 243 chain 9662 chr14 107349540 + 80847907 80848040 MER85 139 + 0 139 162288 96 8 14 29 chain 54954 chr14 107349540 + 80869827 80870538 LTR17 781 + 0 709 55738 59 1 0 102 1 0 13 6 10 42 2 0 101 1 0 212 2 1 169 chain 22573 chr14 107349540 + 80890671 80890968 AluSp 311 - 13 311 117701 16 4 6 272 1 0 4 chain 18084 chr14 107349540 + 80891815 80892105 MER44D 709 - 39 341 132636 52 0 1 8 17 18 116 27 36 52 0 1 18 chain 42911 chr14 107349540 + 80911191 80911736 MLT2A2 560 - 0 559 65527 70 0 1 16 1 2 58 0 11 194 16 17 190 chain 5015 chr14 107349540 + 80919292 80919363 L1MA4 2864 - 55 124 194969 43 3 1 25 chain 6538 chr14 107349540 + 80930648 80930730 THE1D-int 1627 - 5 88 180945 12 0 1 70 chain 20348 chr14 107349540 + 80933906 80934157 L1PA6 6164 - 11 265 126072 36 0 3 215 chain 238398 chr14 107349540 + 80934157 80938314 HERVK22-int 3844 + 349 3844 16859 16 5 6 5 1 0 185 0 1 353 0 1 118 2 4 5 0 3 28 6 0 476 10 14 461 9 13 41 0 3 949 6 5 12 1 0 70 1 0 6 1 0 20 6 5 28 1 0 21 2 0 39 15 10 38 9 7 12 23 13 4 1 0 12 106 79 14 15 11 29 812 196 88 19 18 76 chain 42846 chr14 107349540 + 80938360 80938900 LTR12 884 - 257 884 65597 226 1 23 19 0 25 211 0 41 57 1 0 25 chain 23388 chr14 107349540 + 80945692 80946004 THE1A 353 - 43 353 113713 151 4 3 45 2 1 110 chain 114267 chr14 107349540 + 80946009 80947466 THE1A-int 1579 - 5 1579 33009 227 0 45 124 3 4 98 2 1 498 0 72 56 1 2 249 1 0 22 0 1 5 2 1 169 chain 27719 chr14 107349540 + 80947466 80947821 THE1A 353 - 0 353 93973 155 1 0 88 1 0 110 chain 261183 chr14 107349540 + 80952505 80955488 L1PA4 6152 + 1279 6152 15634 645 8 1 44 1 2 1211 0 1 139 0 1895 935 chain 58434 chr14 107349540 + 80979979 80980710 MER4E1 777 + 18 770 53726 523 1 9 42 0 13 27 6 7 44 1 0 87 chain 57763 chr14 107349540 + 80984005 80984719 LTR17 781 - 28 781 54103 12 1 45 242 3 0 127 1 0 171 1 0 156 chain 73692 chr14 107349540 + 81005707 81006745 MER11A 1151 + 0 1147 46681 63 1 100 53 13 12 64 10 6 142 4 6 92 0 1 145 0 1 92 8 1 43 8 41 22 18 0 36 0 1 60 6 7 6 0 1 152 chain 13808 chr14 107349540 + 81019437 81019677 L1PA8 5853 - 0 243 145231 84 10 9 19 2 1 36 23 26 13 1 2 24 0 1 28 chain 4429 chr14 107349540 + 81021879 81021961 LTR37A 408 + 305 386 201598 29 18 17 35 chain 363280 chr14 107349540 + 81057134 81061823 L1PA7 6471 + 2088 6466 11282 656 0 3 554 0 1 201 1 0 46 34 38 222 0 4 228 0 3 19 4 0 114 6 7 292 4 0 81 318 0 392 0 1 527 0 1 143 1 0 143 1 0 108 1 0 120 2 1 4 0 1 111 0 1 26 0 1 15 0 1 165 1 0 140 1 0 8 chain 23584 chr14 107349540 + 81062032 81062391 THE1B 368 - 2 368 112670 54 1 2 80 1 0 13 0 7 6 6 6 107 14 0 7 11 25 59 chain 107819 chr14 107349540 + 81088645 81089813 L1PA3long 6157 + 4989 6157 34776 1168 chain 16291 chr14 107349540 + 81102101 81102430 Tigger4b 360 + 47 356 137504 10 17 0 26 0 1 22 78 81 109 7 0 60 chain 21142 chr14 107349540 + 81108192 81108448 AluY 311 + 41 297 123400 256 chain 194762 chr14 107349540 + 81116084 81118388 L1PA7 6471 - 1324 3633 19598 731 1 0 661 0 2 854 6 10 51 chain 38141 chr14 107349540 + 81118392 81118842 L1PA7 6471 + 5165 5614 71928 376 1 0 73 chain 7397 chr14 107349540 + 81118842 81118923 L1PA7 6471 + 5617 5698 174785 81 chain 51166 chr14 107349540 + 81118923 81119537 L1PA7 6471 + 5700 6318 58206 438 0 1 138 0 3 38 chain 11830 chr14 107349540 + 81119540 81119681 L1PA7 6471 + 6322 6463 152906 141 chain 11880 chr14 107349540 + 81136801 81136957 L1PB4 2604 + 2413 2568 152693 74 0 1 4 1 0 60 1 0 16 chain 29071 chr14 107349540 + 81139705 81140015 AluYa5 310 + 0 307 88677 132 3 0 175 chain 84421 chr14 107349540 + 81145176 81146335 MER11A 1151 + 0 1151 41750 176 8 0 116 14 9 87 0 1 295 1 2 57 0 4 58 2 1 5 26 0 18 0 1 4 10 68 7 35 0 26 0 2 214 chain 76602 chr14 107349540 + 81152564 81153581 L1PA10 4194 + 1220 2246 45159 123 0 5 52 1 2 398 17 3 220 8 10 54 0 15 144 chain 68842 chr14 107349540 + 81160397 81161259 L1PA8 5853 + 4987 5853 48880 23 0 2 209 0 8 274 0 1 60 1 0 44 2 0 70 2 1 9 1 0 52 2 1 19 1 0 93 chain 9210 chr14 107349540 + 81174845 81174945 L1PA3long 6157 - 0 100 164509 100 chain 36123 chr14 107349540 + 81195484 81196084 L1PB1 5432 - 108 663 74735 16 19 8 4 1 0 15 1 0 45 1 0 16 1 0 51 3 1 8 5 0 16 1 0 6 1 0 21 9 0 14 1 0 106 1 0 8 20 10 168 1 0 36 0 1 5 chain 31483 chr14 107349540 + 81221279 81221722 MLT2A1 477 + 0 477 81672 168 9 6 9 0 1 20 0 1 169 0 1 10 21 55 37 chain 29611 chr14 107349540 + 81230560 81230878 AluYb8 318 + 0 317 86174 132 1 0 185 chain 33369 chr14 107349540 + 81235624 81236001 L1PA5 6144 - 0 399 78622 188 0 22 189 chain 74929 chr14 107349540 + 81265522 81266587 MER11A 1151 + 0 1151 46048 45 10 109 76 1 0 64 4 0 146 1 4 94 0 1 296 45 28 21 18 0 36 0 1 14 1 2 35 9 9 89 4 25 56 chain 59061 chr14 107349540 + 81268281 81268996 L1PA8A 6298 + 5580 6291 53358 592 3 0 75 6 5 39 chain 49660 chr14 107349540 + 81278555 81279737 L1PA15 4387 - 36 884 59264 23 2 0 3 2 0 9 2 0 46 17 14 39 1 0 10 10 6 16 6 5 50 2 1 25 3 2 34 373 59 77 1 0 45 2 0 60 3 0 15 2 0 130 13 18 161 chain 19714 chr14 107349540 + 81288163 81288474 THE1B 368 - 20 368 128055 105 3 36 6 7 0 6 3 0 20 8 7 109 4 19 40 chain 24173 chr14 107349540 + 81288474 81288771 THE1B-int 1605 - 0 326 109364 17 0 1 52 0 28 228 chain 19554 chr14 107349540 + 81291226 81291570 THE1B 368 - 0 368 128508 101 59 69 22 1 3 4 1 0 76 3 0 27 7 23 43 chain 23200 chr14 107349540 + 81298255 81298597 THE1B 368 + 0 348 114679 18 0 1 98 0 1 51 1 0 27 39 44 108 chain 3447 chr14 107349540 + 81299356 81299410 MER58A 224 - 143 198 216254 16 3 4 35 chain 18875 chr14 107349540 + 81305229 81305449 AluY 311 + 68 289 130437 64 0 1 156 chain 147592 chr14 107349540 + 81324294 81325900 L1PA3long 6157 + 4552 6156 24945 5 2 0 1599 chain 22059 chr14 107349540 + 81340029 81340422 THE1B 368 + 15 368 119973 104 95 54 29 2 0 123 2 5 38 chain 19862 chr14 107349540 + 81346956 81347209 AluY 311 + 38 285 127612 85 10 4 158 chain 474024 chr14 107349540 + 81351314 81357132 L1PA8 5853 + 50 5849 7910 22 2 0 10 52 30 190 14 18 325 0 1 834 0 1 543 2 0 48 0 1 20 0 3 908 1 0 4 0 1 307 1 0 414 0 1 438 1 2 168 0 1 46 0 1 249 0 1 96 0 1 276 2 0 8 1 0 102 0 1 106 1 2 335 1 0 47 2 0 67 2 1 8 4 3 50 2 1 19 1 0 89 chain 148546 chr14 107349540 + 81396241 81398257 Charlie3 2679 + 17 2101 24813 17 35 34 27 14 15 154 27 28 107 0 62 29 13 17 229 0 1 73 1 4 249 0 1 102 0 1 498 0 4 175 4 0 6 6 0 86 4 5 160 chain 34393 chr14 107349540 + 81431236 81431712 LTR3B_ 500 - 17 500 77072 59 20 22 25 0 4 73 0 1 137 7 7 4 0 1 38 2 1 111 chain 27637 chr14 107349540 + 81439467 81439773 AluYf4 310 + 0 306 94244 306 chain 22977 chr14 107349540 + 81469183 81469427 L1HS 6032 - 11 255 115730 244 chain 134586 chr14 107349540 + 81478299 81479761 L1PA3long 6157 - 13 1475 27100 1462 chain 51736 chr14 107349540 + 81485809 81486430 L1PA7 6471 - 1 626 57798 11 3 7 338 7 9 5 2 0 255 chain 66017 chr14 107349540 + 81486708 81487570 Charlie3 2679 + 68 2671 50088 22 1 0 383 2 1749 375 21 16 58 chain 113825 chr14 107349540 + 81509291 81510721 L1PA11 4918 + 3026 4462 33141 137 0 4 352 0 2 172 1 2 148 4 3 467 0 4 11 1 0 67 1 0 12 2 0 55 chain 122151 chr14 107349540 + 81520724 81522320 THE1B-int 1605 + 0 1605 30330 13 5 7 23 2 3 117 0 1 185 0 1 5 16 0 77 10 35 860 14 8 261 0 1 8 chain 25220 chr14 107349540 + 81539095 81539361 AluYa5 310 + 36 302 103639 266 chain 43993 chr14 107349540 + 81542004 81542478 L1PA2 6032 + 5384 5858 64214 474 chain 42145 chr14 107349540 + 81548307 81548933 LTR76 689 + 7 679 66458 7 0 8 23 5 4 88 0 20 232 2 0 5 1 0 57 0 31 67 2 1 52 9 0 10 0 9 15 21 15 16 2 0 12 chain 3910 chr14 107349540 + 81550448 81550497 THE1C 375 - 328 375 208709 34 2 0 13 chain 3039 chr14 107349540 + 81559289 81559325 MER58A 224 - 133 169 224219 36 chain 3241 chr14 107349540 + 81563872 81563937 MER5A1 166 - 100 166 220213 26 17 18 22 chain 545527 chr14 107349540 + 81580511 81586533 L1PA3long 6157 + 0 6157 2006 152 0 1 614 9 137 1793 1 0 821 4 12 1111 1 0 1516 chain 29494 chr14 107349540 + 81597053 81597363 AluYb8 318 + 0 310 86653 310 chain 21673 chr14 107349540 + 81600501 81600771 AluSp 311 - 34 303 121490 85 2 0 78 4 5 101 chain 8606 chr14 107349540 + 81615740 81615846 MLT1B 390 + 284 390 167695 106 chain 15103 chr14 107349540 + 81616158 81616534 L1PB1 5432 - 19 363 141020 9 1 0 12 1 0 22 1 0 15 77 59 16 1 0 43 1 0 16 2 1 52 2 0 7 19 14 9 1 0 24 13 13 32 chain 7092 chr14 107349540 + 81617706 81617893 L1MA7 2200 - 169 329 176814 20 89 62 78 chain 7322 chr14 107349540 + 81623467 81623740 L1PB1 5432 + 5209 5430 175290 11 2 1 15 1 0 24 0 1 18 6 5 12 3 0 9 108 65 22 1 0 12 1 0 18 1 0 4 1 0 4 chain 20761 chr14 107349540 + 81652218 81652495 AluSc 308 - 22 308 124749 38 4 14 177 2 1 56 chain 123097 chr14 107349540 + 81673862 81675442 THE1A-int 1579 + 0 1571 30009 21 2 1 320 0 2 384 7 13 67 1 0 4 0 1 111 14 11 175 1 5 13 19 0 44 0 1 393 0 1 4 chain 25856 chr14 107349540 + 81675450 81675785 THE1A 353 + 0 333 100627 103 1 2 5 2 0 207 1 0 16 chain 3060 chr14 107349540 + 81679177 81679214 MER3 215 + 178 215 223810 37 chain 24553 chr14 107349540 + 81695153 81695460 AluSc8 310 + 4 309 107235 114 4 0 16 1 3 172 chain 3604 chr14 107349540 + 81696535 81696579 MLT2B2 565 + 449 493 213586 44 chain 3618 chr14 107349540 + 81703293 81703335 LTR12C 1709 + 676 718 213379 42 chain 33779 chr14 107349540 + 81704107 81704551 MER4A1 472 - 0 472 77970 128 0 2 46 3 0 21 1 2 19 1 29 225 chain 17525 chr14 107349540 + 81705969 81706267 L1MA5A 2387 - 118 377 134195 39 28 0 13 3 0 30 1 0 30 2 0 49 1 0 45 7 4 26 1 0 23 chain 119205 chr14 107349540 + 81710234 81711601 SVA_B 1603 - 0 1603 31335 432 0 2 153 0 124 40 1 0 101 0 80 256 0 1 365 2 32 17 chain 10441 chr14 107349540 + 81729516 81730028 MER30 238 + 2 231 158527 22 7 25 48 328 30 6 7 0 5 2 0 14 0 6 73 chain 21522 chr14 107349540 + 81738325 81738583 AluY 311 + 40 300 122065 50 0 1 41 0 1 167 chain 11634 chr14 107349540 + 81751927 81752070 Tigger1 2417 + 1773 1916 153757 143 chain 8494 chr14 107349540 + 81754692 81754866 Tigger3a 397 - 73 258 168327 31 28 28 71 22 33 22 chain 4860 chr14 107349540 + 81783024 81783082 MSTB 430 - 13 71 196677 58 chain 14009 chr14 107349540 + 81793311 81793477 AluSz6 309 + 92 258 144552 166 chain 5136 chr14 107349540 + 81812117 81812180 MLT1B 390 + 327 390 193722 63 chain 101691 chr14 107349540 + 81822152 81823307 L1P1 4361 - 20 1172 36345 12 2 1 23 1 0 155 1 0 961 chain 96890 chr14 107349540 + 81823307 81824395 L1PA3long 6157 + 5060 6157 37567 9 1 0 78 0 1 572 0 12 420 3 0 5 chain 2746 chr14 107349540 + 81843184 81843253 MER106A 234 - 0 68 229544 20 1 0 8 2 1 11 13 14 14 chain 5043 chr14 107349540 + 81844866 81844937 L1MD2 1676 - 860 933 194698 11 3 5 57 chain 41864 chr14 107349540 + 81872108 81872641 MLT2A2 560 + 0 553 66813 396 12 23 53 0 9 72 chain 24913 chr14 107349540 + 81884429 81884772 THE1B 368 - 0 361 105258 19 0 7 48 1 0 94 2 0 16 1 0 5 0 1 4 6 5 110 0 15 37 chain 3336 chr14 107349540 + 81917965 81918060 MER33 330 - 8 139 218298 20 35 72 22 1 0 17 chain 108024 chr14 107349540 + 81928234 81929483 SVA_B 1603 - 0 1552 34706 601 0 78 19 1 123 96 0 116 496 18 5 18 chain 23881 chr14 107349540 + 81946532 81946798 AluYf4 310 - 10 276 111021 266 chain 3055 chr14 107349540 + 81978629 81978665 MLT2D 439 + 403 439 223905 36 chain 46037 chr14 107349540 + 81979313 81979892 LTR12 884 + 0 869 62007 105 1 0 4 1 2 76 0 157 34 2 0 246 1 2 30 0 134 79 chain 242707 chr14 107349540 + 81979934 81982869 HERV9-int 5642 + 6 2967 16628 73 4 5 212 0 3 164 0 1 137 4 3 7 5 0 101 0 4 81 1 0 309 4 5 46 0 4 122 0 2 295 0 2 5 3 1 34 0 1 483 0 10 251 1 0 97 0 2 242 0 3 146 0 3 19 2 1 87 chain 77369 chr14 107349540 + 82004262 82005325 MER11A 1151 - 0 1151 44792 42 2 1 16 13 16 43 2 1 34 8 7 98 1 33 19 0 27 67 0 4 37 23 28 5 1 0 116 0 1 227 0 2 22 0 11 66 1 0 141 0 8 79 chain 442651 chr14 107349540 + 82007388 82013126 L1PA5 6144 + 463 6143 8973 42 55 46 30 84 8 109 76 79 41 15 32 59 5 4 4 0 1 36 38 13 45 28 29 4 1 0 103 5 7 10 24 15 301 5 45 112 0 1 64 1 0 277 0 1 324 0 1 4 9 12 1483 1 2 594 0 1 224 1 2 146 0 1 519 1 0 695 7 0 143 3 1 10 chain 221103 chr14 107349540 + 82013126 82016067 L1PA7 6471 + 3796 6459 17809 208 4 0 297 1 11 78 0 1 234 322 0 52 6 26 114 0 1 80 8 23 163 0 1 536 1 0 515 0 1 322 chain 5427 chr14 107349540 + 82019835 82019905 MLT1D 503 + 405 475 190732 70 chain 5127 chr14 107349540 + 82034788 82034898 L1MB3 1562 - 10 118 193810 28 1 0 26 33 32 22 chain 26172 chr14 107349540 + 82049019 82049397 LTR19A 502 + 0 452 99320 27 17 16 124 0 76 31 3 4 153 3 1 20 chain 31881 chr14 107349540 + 82051973 82052423 MER4A1 472 + 0 459 81044 15 8 10 15 0 7 93 1 0 51 5 9 6 4 0 24 1 0 169 1 3 57 chain 19030 chr14 107349540 + 82068602 82068851 L1PA8 5853 - 0 245 130033 93 1 0 19 4 3 49 1 0 10 1 0 71 chain 42573 chr14 107349540 + 82080508 82081062 LTR12_ 688 - 0 688 65936 74 0 4 78 0 103 135 0 3 121 24 7 36 0 41 86 chain 3459 chr14 107349540 + 82093080 82093159 MER20 218 - 87 161 216007 36 27 22 16 chain 3421 chr14 107349540 + 82099521 82099561 MLT2B3 573 - 533 573 216758 40 chain 39988 chr14 107349540 + 82107044 82107567 LTR2C 499 - 0 499 69335 63 0 1 123 0 3 112 0 1 9 44 15 172 chain 15430 chr14 107349540 + 82114920 82115213 L1MA2 4263 + 3818 4114 140101 14 11 13 24 25 36 53 9 7 93 7 0 47 1 0 9 chain 29033 chr14 107349540 + 82115965 82116277 AluYa5 310 + 0 310 88839 97 2 0 213 chain 3116 chr14 107349540 + 82126928 82126962 tRNA-Gly-GGY 63 - 27 61 222640 34 chain 9163 chr14 107349540 + 82129256 82129388 MER85 139 - 1 139 164746 21 5 1 18 0 10 88 chain 16067 chr14 107349540 + 82134579 82134873 LTR12C 1709 - 501 799 138160 20 2 0 29 44 50 17 24 24 158 chain 12275 chr14 107349540 + 82138940 82139158 MER39B 650 + 429 640 151098 66 3 0 33 35 30 36 2 3 43 chain 5597 chr14 107349540 + 82145219 82145283 LTR12C 1709 - 991 1055 189117 64 chain 5074 chr14 107349540 + 82145388 82145451 LTR12C 1709 - 1000 1064 194377 58 0 1 5 chain 6519 chr14 107349540 + 82145476 82145558 LTR12C 1709 - 791 913 181091 60 0 40 22 chain 15873 chr14 107349540 + 82149825 82150123 MER4A1 472 + 173 471 138733 48 77 67 60 0 1 23 0 7 22 1 3 67 chain 125159 chr14 107349540 + 82172784 82174232 L1PA5 6144 - 10 1455 29340 225 2 1 614 2 0 605 chain 27907 chr14 107349540 + 82178279 82178713 LTR12F 595 + 0 595 93340 25 0 1 77 0 1 42 25 89 11 1 0 41 10 74 41 1 32 36 12 13 112 chain 20923 chr14 107349540 + 82223501 82223832 THE1D 372 + 0 332 124201 175 1 0 14 57 59 84 chain 10759 chr14 107349540 + 82235536 82235659 L1PB1 5432 - 1435 1558 157158 123 chain 97518 chr14 107349540 + 82235659 82237092 L1PB1 5432 + 4064 5427 37418 386 0 1 34 7 9 115 4 8 9 3 0 477 1 0 11 41 0 24 1 0 4 22 17 9 2 0 52 2 1 15 1 0 45 1 0 15 23 12 18 3 1 5 1 0 14 2 0 27 1 0 18 1 0 13 1 0 18 2 0 5 chain 13495 chr14 107349540 + 82261800 82261980 L1PA7 6471 + 6264 6465 146369 29 1 8 17 5 19 128 chain 5120 chr14 107349540 + 82278241 82278420 MER74A 558 - 154 335 193874 31 104 106 44 chain 26521 chr14 107349540 + 82289493 82289852 THE1B 368 - 0 368 97968 78 3 0 43 1 0 15 0 2 30 4 0 141 0 15 44 chain 99999 chr14 107349540 + 82294798 82296348 LTR12C 1709 - 0 1709 36780 84 1 0 85 1 0 68 8 11 233 44 13 96 4 51 30 2 0 82 6 84 35 1 0 99 2 43 85 1 2 74 13 12 19 4 41 11 47 19 136 8 9 33 37 43 17 6 7 157 0 9 21 chain 40812 chr14 107349540 + 82314886 82315428 MLT2A2 560 - 0 560 68158 61 3 6 80 0 11 198 7 10 14 0 1 179 chain 39413 chr14 107349540 + 82318871 82319443 MER61-int 3695 - 2553 3278 70139 191 0 2 82 0 49 16 0 1 67 27 123 44 15 16 43 0 1 32 0 3 55 chain 463154 chr14 107349540 + 82326148 82331253 L1PA3long 6157 + 0 6152 8288 152 0 1 198 1 1045 929 0 1 3497 0 1 328 chain 36654 chr14 107349540 + 82358195 82358629 L1PA5 6144 + 5708 6140 74017 326 0 1 96 3 0 9 chain 13841 chr14 107349540 + 82360334 82360669 L1PB1 5432 + 5114 5423 145096 24 1 0 4 3 2 12 28 22 40 2 1 17 1 0 45 1 0 21 16 6 18 14 11 9 2 0 16 1 3 5 1 0 13 0 1 7 1 0 13 1 0 19 chain 118558 chr14 107349540 + 82411164 82412493 L1PA4 6152 + 4813 6152 31601 458 0 1 26 0 4 839 0 5 6 chain 25594 chr14 107349540 + 82425158 82425532 THE1C 375 + 0 375 101756 113 0 1 68 15 16 19 1 0 56 0 1 5 8 9 76 2 0 11 chain 53452 chr14 107349540 + 82470365 82471061 L1PA8 5853 - 4 704 56720 89 1 0 19 2 1 50 1 0 11 1 0 71 0 1 43 1 0 6 1 0 251 14 22 107 0 1 28 chain 11775 chr14 107349540 + 82480669 82480821 L1PB4 2604 + 2401 2553 153151 152 chain 10093 chr14 107349540 + 82487811 82487944 MER6A 605 + 326 457 160118 43 2 0 88 chain 108487 chr14 107349540 + 82490257 82491601 L1PA8A 6298 - 11 1351 34566 28 0 1 72 0 1 612 6 5 214 0 1 68 1 0 313 6 1 24 chain 10266 chr14 107349540 + 82491843 82491987 L1P3b 214 - 39 179 159299 12 7 3 125 chain 25311 chr14 107349540 + 82494966 82495303 THE1B 368 - 20 368 103168 150 3 0 25 2 1 108 5 20 44 chain 25663 chr14 107349540 + 82527252 82527657 LTR7 482 - 6 482 101437 170 0 1 13 0 31 28 8 9 44 51 0 28 9 98 54 chain 269008 chr14 107349540 + 82528913 82532125 HERVH-int 3825 - 0 3221 15231 366 1 2 368 0 3 687 0 1 289 12 17 566 0 1 358 0 1 371 3 8 9 2 0 48 2 1 8 83 0 24 1 79 14 chain 7299 chr14 107349540 + 82554778 82554864 MLT1A1 405 - 36 122 175455 86 chain 8383 chr14 107349540 + 82555446 82555602 MER74A 558 + 237 381 168951 62 10 1 29 19 18 26 2 0 8 chain 24817 chr14 107349540 + 82609091 82609403 MSTA-int 1630 + 1306 1619 105795 306 0 1 6 chain 29058 chr14 107349540 + 82614161 82614533 L1PA7 6471 - 8 382 88725 141 2 1 10 2 3 176 2 4 39 chain 3502 chr14 107349540 + 82632900 82632942 HERV35I-int 1679 - 843 885 215351 42 chain 83960 chr14 107349540 + 82651785 82652805 L1PA8A 6298 + 5265 6290 41921 219 1 0 183 0 1 130 0 1 309 0 4 18 0 1 4 1 0 155 chain 43800 chr14 107349540 + 82655427 82655953 MER9a1 513 + 0 513 64447 183 12 1 272 2 0 57 chain 5416 chr14 107349540 + 82718562 82718625 LTR9B 643 - 571 634 190836 63 chain 3335 chr14 107349540 + 82728368 82728410 Arthur1C 363 + 215 257 218329 42 chain 4570 chr14 107349540 + 82732770 82732832 LTR37A 408 - 246 307 200001 8 1 0 53 chain 75372 chr14 107349540 + 82751918 82752792 MER11D 897 + 0 897 45833 14 0 1 446 1 0 132 1 24 280 chain 419522 chr14 107349540 + 82783548 82788799 L1PA7 6471 - 6 6373 9541 142 9 10 57 0 251 73 0 1 136 0 2 172 1 0 131 3 864 5 0 1 41 0 1 7 1 0 569 2 0 52 0 4 109 0 1 229 0 1 498 9 7 399 3 1 439 0 1 156 0 1 69 1 0 259 0 4 210 0 1 4 2 1 839 21 19 42 0 1 4 6 5 187 1 0 47 2 0 314 chain 16691 chr14 107349540 + 82801211 82801561 THE1D 372 - 19 372 136432 81 3 1 31 87 96 12 0 4 49 31 23 56 chain 556738 chr14 107349540 + 82813893 82819912 L1PA2 6032 + 0 6030 644 481 1 9 462 0 3 593 0 1 3701 1 0 780 chain 48047 chr14 107349540 + 82843826 82844398 L1PA8A 6298 + 5718 6291 60448 504 0 1 68 chain 5380 chr14 107349540 + 82860016 82860082 L1PA8 5853 + 5581 5645 191197 29 2 0 35 chain 14568 chr14 107349540 + 82875798 82875960 L1PA4 6152 + 5991 6152 142681 156 1 0 5 chain 9396 chr14 107349540 + 82894010 82894444 MER34A 573 + 0 417 163580 61 0 1 4 1 0 13 210 193 10 57 0 10 3 59 43 0 1 22 chain 5256 chr14 107349540 + 82917289 82917373 MER57D 437 - 0 85 192450 14 10 11 60 chain 130965 chr14 107349540 + 82933900 82935682 L1PA11 4918 + 2721 4511 27870 16 2 1 104 3 4 70 0 1 69 1 0 329 0 1 92 0 1 257 1 0 31 0 2 5 19 30 21 0 1 10 2 0 58 0 1 372 3 0 74 1 0 65 0 2 32 0 1 22 2 1 20 1 0 61 3 1 11 2 1 23 chain 35821 chr14 107349540 + 82936406 82936906 L1PA8 5853 - 0 505 75105 37 6 8 47 2 1 19 2 1 52 4 3 6 1 0 70 2 0 45 1 0 169 0 10 37 chain 83620 chr14 107349540 + 82939112 82940041 L1PA3long 6157 - 0 931 42068 427 0 2 502 chain 82924 chr14 107349540 + 82940041 82940941 L1PA3long 6157 + 4330 5230 42370 900 chain 29538 chr14 107349540 + 82949099 82949439 L1PA4 6152 - 640 978 86486 135 3 1 202 chain 57038 chr14 107349540 + 82949439 82950073 L1PA4 6152 + 5507 6140 54510 497 1 0 136 chain 4710 chr14 107349540 + 82981283 82981372 MER51A 677 + 311 380 198396 33 22 1 18 0 1 16 chain 45426 chr14 107349540 + 82990555 82991345 L1PB1 5432 + 4689 5427 62566 19 0 1 185 1 0 200 10 15 5 3 0 11 10 9 11 2 1 11 2 0 11 2 0 20 24 1 31 6 5 12 2 1 42 1 0 10 30 18 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 136124 chr14 107349540 + 83007190 83009167 L1PB1 5432 - 12 2072 26811 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 16 1 16 1 0 44 1 0 15 2 1 43 27 21 9 1 0 13 1 0 20 3 0 11 1 0 84 6 8 117 1 0 67 0 3 103 0 113 189 0 26 279 1 0 89 45 0 20 10 7 31 6 5 99 0 2 129 6 29 8 0 1 20 4 5 225 0 1 83 chain 3417 chr14 107349540 + 83010547 83010591 MER53 195 - 127 172 216806 33 0 1 11 chain 25767 chr14 107349540 + 83019611 83019882 AluYa5 310 - 5 276 101019 271 chain 14378 chr14 107349540 + 83043594 83043751 L1PA4 6152 + 5995 6152 143272 157 chain 17035 chr14 107349540 + 83080313 83080605 MER47A 366 + 73 366 135505 190 28 44 15 24 9 35 chain 9095 chr14 107349540 + 83091746 83091851 L1PA5 6144 + 6039 6144 165093 105 chain 4355 chr14 107349540 + 83116964 83117030 MER53 195 - 30 95 202497 27 0 1 7 1 0 26 1 0 4 chain 19576 chr14 107349540 + 83118280 83118492 L1PA2 6032 + 5813 6025 128442 212 chain 32702 chr14 107349540 + 83140727 83141141 MLT2A1 477 + 0 439 79682 161 12 9 9 0 1 24 0 1 190 3 29 15 chain 38825 chr14 107349540 + 83147394 83147841 L1PA5 6144 - 6 451 70982 253 2 0 192 chain 26267 chr14 107349540 + 83168009 83168364 L1PA13 3608 - 287 638 98948 48 2 0 113 1 0 32 1 0 158 chain 25552 chr14 107349540 + 83180871 83181219 L1PA8 5853 + 5512 5853 101972 49 2 1 48 2 0 68 2 1 9 1 0 51 3 2 19 1 0 93 chain 6822 chr14 107349540 + 83217415 83217494 LTR5B 1012 - 933 1012 178777 79 chain 37209 chr14 107349540 + 83226496 83226944 LTR7 482 - 0 482 73230 49 12 14 124 0 31 38 0 1 225 chain 21502 chr14 107349540 + 83259535 83259806 AluSc8 310 + 16 291 122137 37 0 1 77 5 8 152 chain 33923 chr14 107349540 + 83269748 83270188 LTR2 463 - 0 463 77736 198 3 5 65 1 0 4 7 29 162 chain 146112 chr14 107349540 + 83280008 83281667 SVA_D 2077 - 9 2062 25143 351 0 19 100 0 16 138 0 224 178 0 134 147 3 0 33 0 3 591 1 2 117 chain 188107 chr14 107349540 + 83336557 83339123 MER61-int 3695 + 1109 3695 20229 141 1 2 120 0 14 157 10 11 273 0 1 142 0 2 65 1 2 89 0 4 24 4 0 230 0 1 132 0 5 85 8 6 101 0 4 47 2 1 81 26 22 58 9 6 5 0 3 189 29 26 265 12 14 152 6 5 56 1 0 45 chain 42497 chr14 107349540 + 83396795 83397318 L1PA7 6471 + 5945 6470 66017 85 0 1 329 0 1 109 chain 56802 chr14 107349540 + 83423101 83423802 L1PA8A 6298 - 8 712 54652 54 9 11 144 0 1 494 chain 26457 chr14 107349540 + 83432064 83432401 L1PA10 4194 - 33 366 98218 11 1 0 34 3 0 170 0 1 7 2 0 14 0 1 95 chain 29941 chr14 107349540 + 83456145 83456459 AluYb8 318 - 4 318 84997 314 chain 42476 chr14 107349540 + 83460921 83461430 MER9a3 513 + 0 513 66041 202 12 3 102 0 13 193 chain 28689 chr14 107349540 + 83469324 83469628 AluYa5 310 - 6 310 90375 304 chain 24232 chr14 107349540 + 83476705 83477051 THE1B 368 + 2 368 109034 26 2 0 12 0 15 120 2 1 40 0 7 45 13 14 86 chain 30778 chr14 107349540 + 83482607 83483287 L1PB1 5432 + 4827 5423 82907 168 3 2 17 5 7 61 148 86 52 2 1 15 1 0 44 1 0 12 28 16 19 24 19 24 1 0 21 1 0 5 0 1 7 1 0 8 1 0 11 chain 54995 chr14 107349540 + 83502875 83503644 THE1A-int 1579 - 795 1579 55706 127 0 1 5 0 2 50 16 29 47 5 2 218 14 15 47 1 0 39 1 2 80 0 1 119 chain 130289 chr14 107349540 + 83558545 83560129 LTR12C 1709 + 0 1709 28022 428 8 9 136 2 5 72 0 119 68 1 0 158 0 2 115 34 31 81 0 4 481 chain 26158 chr14 107349540 + 83570794 83571150 THE1B 368 + 0 368 99374 44 0 6 6 0 9 101 13 12 17 2 0 173 chain 26575 chr14 107349540 + 83589568 83589945 THE1C 375 + 0 350 97745 75 1 0 75 29 0 53 0 2 111 0 1 33 chain 50872 chr14 107349540 + 83614621 83615274 LTR12_ 688 - 0 688 58386 469 23 18 83 0 41 52 1 0 25 chain 8269 chr14 107349540 + 83632303 83632397 L1PA3long 6157 - 7 101 169576 94 chain 55090 chr14 107349540 + 83635873 83636463 L1HS 6032 - 0 590 55653 590 chain 8992 chr14 107349540 + 83640816 83640923 THE1B-int 1605 - 11 118 165651 107 chain 3001 chr14 107349540 + 83640923 83640966 THE1B 368 - 327 368 225025 27 2 0 14 chain 85218 chr14 107349540 + 83653539 83654710 L1PA10 4194 - 354 1655 41446 121 31 32 215 6 7 4 1 0 150 0 136 24 0 1 21 2 1 478 20 12 8 0 1 90 chain 261403 chr14 107349540 + 83668232 83671063 L1PA2 6032 - 0 2831 15625 2831 chain 35927 chr14 107349540 + 83687190 83687580 L1PA2 6032 - 0 393 74983 334 0 3 56 chain 32500 chr14 107349540 + 83687580 83687934 L1PA2 6032 + 5263 5617 80022 354 chain 35862 chr14 107349540 + 83691434 83692664 LTR7C 471 - 0 471 75049 148 0 6 73 766 0 63 11 12 169 chain 28887 chr14 107349540 + 83730417 83730730 AluYb8 318 - 7 318 89502 185 2 0 126 chain 18058 chr14 107349540 + 83751943 83752213 HSMAR2 1300 + 1039 1300 132701 37 5 3 13 0 1 26 1 0 119 0 3 5 1 0 21 9 0 33 chain 23108 chr14 107349540 + 83796978 83797277 L1PA7 6471 - 5 303 115102 144 16 15 139 chain 15038 chr14 107349540 + 83807620 83807807 LTR25 836 + 0 191 141211 10 0 4 177 chain 65805 chr14 107349540 + 83808015 83808763 L1PA5 6144 + 5396 6144 50191 748 chain 28052 chr14 107349540 + 83818311 83818707 MLT2A1 477 + 0 385 92822 127 18 0 14 1 2 25 0 4 23 12 13 16 0 1 160 chain 55335 chr14 107349540 + 83818893 83819618 HERVL-int 5654 + 4898 5654 55501 61 0 16 86 1 0 32 9 11 179 0 3 144 0 1 67 0 10 146 chain 20636 chr14 107349540 + 83836155 83836401 L1PA7 6471 - 33 280 125169 129 0 1 117 chain 14445 chr14 107349540 + 83836401 83836573 L1PA7 6471 + 5898 6070 142542 172 chain 23968 chr14 107349540 + 83843326 83843605 AluY 311 + 14 293 110523 279 chain 57008 chr14 107349540 + 83852167 83852899 LTR30 714 - 0 714 54526 77 50 19 363 1 6 17 0 8 224 chain 76651 chr14 107349540 + 83900046 83901328 L1PB1 5432 - 8 1155 45140 4 1 0 6 0 1 9 1 0 13 5 4 17 1 0 24 71 54 11 1 0 41 4 3 16 2 1 53 2 0 8 17 12 12 1 0 21 113 11 297 1 2 183 11 7 243 0 1 93 chain 44224 chr14 107349540 + 83901328 83901929 L1PB1 5432 + 3699 4275 63825 35 29 4 218 1 0 296 0 1 22 chain 39422 chr14 107349540 + 83904882 83905425 MLT2A2 560 + 0 560 70128 27 4 8 134 12 11 26 23 26 174 0 11 143 chain 3193 chr14 107349540 + 83910395 83910429 MER92A 404 + 334 368 221067 34 chain 7519 chr14 107349540 + 83944312 83944396 L1PA8A 6298 + 6203 6287 174049 84 chain 40251 chr14 107349540 + 83971480 83972040 MER41A 554 - 13 554 68942 209 1 0 108 0 1 70 0 1 51 31 15 6 4 0 80 chain 22758 chr14 107349540 + 83993872 83994199 THE1A 353 - 12 353 116791 27 0 1 17 12 11 175 2 1 45 5 20 44 chain 23982 chr14 107349540 + 84013632 84013946 AluY 311 + 10 311 110431 123 23 12 160 2 0 6 chain 3029 chr14 107349540 + 84022849 84022882 LTR12_ 688 + 163 196 224407 33 chain 24673 chr14 107349540 + 84048725 84049054 THE1A 353 + 0 327 106596 109 6 5 88 1 0 125 chain 10515 chr14 107349540 + 84049949 84050074 THE1A 353 + 216 341 158183 125 chain 90948 chr14 107349540 + 84094448 84095540 L1PA7 6471 - 20 1116 39310 130 0 5 7 6 0 22 10 11 422 0 1 224 0 3 271 chain 538542 chr14 107349540 + 84105643 84111672 L1PA3long 6157 + 0 6157 3063 153 0 1 200 13 1 412 9 137 115 0 4 1296 0 1 239 0 1 1883 2 0 596 0 1 270 0 4 72 0 2 769 chain 61016 chr14 107349540 + 84133072 84133815 L1PA7 6471 - 4 749 52322 672 0 2 71 chain 124535 chr14 107349540 + 84133817 84135409 L1PA7 6471 + 4109 5707 29532 455 11 10 5 0 1 29 0 1 59 0 10 115 0 1 160 2 1 160 5 1 232 3 0 272 2 0 23 12 16 47 chain 17694 chr14 107349540 + 84140163 84140610 L1PB1 5432 - 5 398 133721 5 2 0 18 1 0 13 1 0 14 8 7 24 2 0 15 1 0 4 2 0 7 2 1 11 28 16 12 1 0 44 1 0 17 1 0 6 1 2 5 1 0 38 2 0 6 10 6 10 21 19 9 3 0 15 22 5 64 chain 11649 chr14 107349540 + 84214825 84214975 THE1B 368 - 224 368 153703 40 6 0 104 chain 30412 chr14 107349540 + 84242317 84242667 L1PA4 6152 + 5802 6152 83659 350 chain 4800 chr14 107349540 + 84263223 84263300 MLT1C 463 + 34 112 197356 19 9 10 49 chain 25503 chr14 107349540 + 84318968 84319263 AluY 311 + 5 297 102206 128 1 0 151 2 0 13 chain 31647 chr14 107349540 + 84332394 84332822 LTR12F 595 + 0 595 81409 79 2 145 12 0 24 60 1 0 39 5 6 230 chain 29340 chr14 107349540 + 84347763 84348074 AluYb8 318 - 7 318 87345 311 chain 4560 chr14 107349540 + 84352099 84352151 Tigger7 736 + 68 120 200110 52 chain 6405 chr14 107349540 + 84383604 84383681 MLT1A0 366 + 273 350 181992 77 chain 18528 chr14 107349540 + 84391504 84391862 MSTA 426 + 0 408 131430 94 30 54 49 60 66 33 1 21 91 chain 28611 chr14 107349540 + 84394973 84395327 THE1A 353 + 0 353 90688 110 1 0 243 chain 28102 chr14 107349540 + 84396903 84397257 THE1A 353 + 0 353 92640 107 4 3 243 chain 39360 chr14 107349540 + 84420808 84421318 MER41C 542 + 0 531 70235 49 0 1 102 1 0 159 0 21 199 chain 27847 chr14 107349540 + 84427922 84428337 LTR7 482 + 0 479 93532 54 23 61 109 8 40 41 0 1 59 1 2 80 9 1 31 chain 32467 chr14 107349540 + 84430722 84431242 LTR10F 562 + 13 562 80082 102 1 85 32 57 4 13 9 16 8 2 0 237 12 5 47 chain 74463 chr14 107349540 + 84447691 84448778 MER11A 1151 + 7 1151 46293 80 0 91 52 1 0 64 4 0 149 0 1 94 0 1 31 20 20 93 2 4 101 10 9 38 25 1 13 6 13 20 18 1 37 0 1 60 6 7 163 chain 35351 chr14 107349540 + 84450215 84450712 L1PB1 5432 + 4626 5103 75731 79 4 3 52 29 8 33 5 6 265 0 1 30 chain 63726 chr14 107349540 + 84451550 84452332 LTR17 781 + 0 781 51131 324 4 3 67 6 7 322 2 1 57 chain 19726 chr14 107349540 + 84515335 84515626 L1PA8 5853 - 0 344 128026 93 1 0 19 3 2 60 5 4 7 0 5 55 2 0 38 0 53 8 chain 6545 chr14 107349540 + 84557798 84557992 MER52D 1964 + 1149 1263 180892 36 71 1 19 25 15 43 chain 119011 chr14 107349540 + 84565214 84566557 SVA_C 1631 - 0 1378 31404 20 2 0 215 2 0 351 0 41 146 3 1 604 chain 14863 chr14 107349540 + 84567465 84567661 L1P1 4361 - 20 213 141742 12 2 1 23 1 0 84 1 0 73 chain 45952 chr14 107349540 + 84567664 84568174 L1P1 4361 + 3694 4203 62080 456 1 0 53 chain 270431 chr14 107349540 + 84581389 84584463 L1PA5 6144 - 2 3082 15169 7 4 0 102 0 15 20 1 0 8 12 13 63 0 1 1918 1 0 318 5 0 615 chain 37933 chr14 107349540 + 84600778 84601269 MER4A1 472 - 0 472 72232 205 21 0 166 0 2 99 chain 14501 chr14 107349540 + 84611030 84611206 L1PA8 5853 - 0 174 142888 93 1 0 19 2 1 61 chain 23961 chr14 107349540 + 84616958 84617260 AluY 311 + 1 302 110559 25 3 4 18 3 0 77 1 2 175 chain 16033 chr14 107349540 + 84686839 84687063 L1PA8 5853 + 5633 5853 138269 49 15 13 44 4 3 18 1 0 93 chain 21038 chr14 107349540 + 84740148 84740433 AluY 311 + 22 311 123772 110 0 1 15 20 28 128 5 0 7 chain 39675 chr14 107349540 + 84753795 84754280 MER9a3 513 + 0 492 69793 18 0 2 90 0 2 321 2 3 18 0 2 36 chain 11918 chr14 107349540 + 84777388 84777529 THE1D-int 1627 - 0 142 152526 36 0 1 105 chain 56124 chr14 107349540 + 84803258 84803967 MER4E1 777 + 0 777 55054 25 2 0 71 0 1 18 0 2 376 5 72 212 chain 20084 chr14 107349540 + 84813210 84813566 THE1C 375 - 2 363 126877 76 12 14 64 43 40 82 16 22 63 chain 30916 chr14 107349540 + 84818947 84819444 L1PA14 3548 + 2974 3452 82660 24 2 0 7 2 0 112 13 9 5 2 0 6 1 0 84 1 0 13 0 1 44 8 9 44 16 11 36 4 2 17 1 0 16 1 0 38 chain 12817 chr14 107349540 + 84820819 84820965 L1PA6 6164 + 6016 6162 148990 146 chain 18387 chr14 107349540 + 84826303 84826598 THE1B 368 + 64 368 131825 105 1 0 14 56 66 119 chain 3904 chr14 107349540 + 84831779 84831823 MLT1J2 417 - 1 45 208795 44 chain 8194 chr14 107349540 + 84854619 84854734 L1MB1 2102 + 1885 1998 169982 57 2 0 56 chain 110306 chr14 107349540 + 84864697 84866311 LTR12C 1709 - 7 1709 34125 77 14 13 72 1 0 188 44 42 44 1 0 38 44 13 93 8 6 4 1 0 203 5 115 37 0 2 53 24 54 183 0 1 39 0 22 185 20 1 23 20 1 193 chain 44133 chr14 107349540 + 84879239 84879783 L1PA7 6471 - 10 553 64036 279 1 2 4 1 0 108 5 4 146 chain 11764 chr14 107349540 + 84906698 84906829 L1PA6 6164 + 6031 6162 153199 131 chain 20400 chr14 107349540 + 84921329 84921567 L1PA7 6471 + 6223 6461 125896 238 chain 45019 chr14 107349540 + 84950723 84951322 MER41B 635 + 10 611 63039 117 1 2 69 1 2 157 1 2 92 21 20 140 chain 35284 chr14 107349540 + 84960002 84960533 MER41A 554 - 0 541 75815 23 0 8 7 5 6 74 3 2 12 0 3 22 9 8 247 9 8 67 13 14 40 chain 292539 chr14 107349540 + 84968253 84971906 HERVH-int 3825 - 0 3825 13855 225 0 2 218 1 0 4 0 1 37 8 218 39 9 11 743 0 1 28 0 1 276 0 10 295 4 31 215 1 0 244 15 0 420 0 8 18 0 1 68 66 1 13 2 1 40 1 38 14 68 12 15 1 0 7 1 0 24 0 1 4 1 0 11 1 0 4 0 4 189 1 0 111 0 11 211 chain 2065 chr14 107349540 + 84971302 84971325 HERVH-int 3825 - 3328 3351 222121 23 chain 28799 chr14 107349540 + 84971908 84972317 LTR7 482 - 0 482 89901 49 12 14 134 0 1 20 8 40 109 8 46 69 chain 130116 chr14 107349540 + 84978009 84979817 LTR12C 1709 - 0 1709 28064 215 262 0 266 0 4 106 3 1 5 1 0 48 0 1 67 0 161 257 2 1 310 0 1 266 chain 5091 chr14 107349540 + 84978285 84978351 LTR12C 1709 - 246 313 194170 22 0 1 44 chain 20895 chr14 107349540 + 85023853 85024225 THE1B-int 1605 - 0 1605 124296 123 94 1326 144 0 1 11 chain 65978 chr14 107349540 + 85027035 85028082 MER52-int 3354 - 84 1107 50111 25 1 0 14 1 0 8 14 12 23 10 6 7 2 0 13 1 0 42 2 0 12 1 0 24 33 37 30 1 0 33 2 0 42 1 0 10 8 6 31 1 0 15 7 5 37 1 0 5 1 0 52 1 0 75 1 0 281 15 14 41 4 5 91 1 0 27 chain 14261 chr14 107349540 + 85064773 85065090 THE1C 375 + 0 336 143677 13 2 0 34 76 87 11 0 9 24 29 30 128 chain 495532 chr14 107349540 + 85115981 85122383 L1PA7 6471 - 4 6468 7096 128 1 4 219 4 0 9 2 0 123 0 1 355 0 5 943 0 4 415 0 1 258 1 0 116 1 5 52 1 0 222 0 1 83 1 0 20 0 1 41 0 2 560 22 145 106 24 7 374 4 0 130 0 1 443 45 0 419 4 5 5 1 0 347 0 3 46 6 5 85 1 2 360 19 7 112 21 21 273 chain 11835 chr14 107349540 + 85126543 85126882 L1PB1 5432 - 10 318 152885 4 1 0 14 1 0 11 2 1 22 85 69 5 1 0 15 1 0 45 1 0 15 2 1 42 12 10 9 5 1 14 1 0 10 1 0 20 chain 4495 chr14 107349540 + 85163087 85163139 Tigger2b_Pri 1066 - 849 901 200845 52 chain 125189 chr14 107349540 + 85182025 85183593 THE1A-int 1579 + 0 1574 29325 861 9 11 278 0 1 281 0 1 72 0 2 67 chain 24744 chr14 107349540 + 85197872 85198544 MER57A1 433 - 9 433 106205 37 1 41 61 4 6 138 318 28 113 chain 3600 chr14 107349540 + 85206285 85206327 U6 107 + 0 42 213638 42 chain 8648 chr14 107349540 + 85216447 85216602 L1MA3 4352 - 45 192 167481 19 1 0 5 2 1 14 14 12 20 4 0 76 chain 5698 chr14 107349540 + 85231913 85231984 L1MB3 1562 + 436 507 188129 71 chain 2917 chr14 107349540 + 85266156 85266229 MER5A1 166 + 92 165 226736 24 1 0 4 24 25 20 chain 4153 chr14 107349540 + 85272166 85272211 MSTA 426 - 363 408 205200 45 chain 29344 chr14 107349540 + 85278626 85278939 AluYa5 310 - 0 310 87325 184 3 0 126 chain 19909 chr14 107349540 + 85280161 85280405 L1PA5 6144 - 2 246 127447 136 1 8 7 7 0 93 chain 8699 chr14 107349540 + 85285850 85285950 L1PA8A 6298 + 6190 6290 167199 100 chain 47640 chr14 107349540 + 85327860 85328501 MER4E1 777 + 0 770 60741 106 5 6 38 4 14 104 7 117 156 1 9 220 chain 21746 chr14 107349540 + 85349797 85350080 AluSx3 311 + 6 290 121224 115 5 6 163 chain 4204 chr14 107349540 + 85394418 85394470 MLT1D 503 - 14 66 204487 52 chain 148259 chr14 107349540 + 85399985 85402116 L1PB1 5432 - 29 2143 24852 12 1 0 21 1 0 24 49 35 15 3 0 16 1 0 39 12 11 9 2 1 49 2 0 12 8 4 11 1 0 6 1 0 24 0 3 5 0 3 31 1 2 186 0 1 70 0 1 93 0 1 87 5 4 121 1 2 59 0 10 178 8 9 34 0 4 35 4 8 175 13 0 118 1 0 146 3 0 223 1 2 214 chain 53851 chr14 107349540 + 85402116 85402826 L1PB1 5432 + 2573 3284 56259 266 16 17 138 5 6 242 7 6 36 chain 11032 chr14 107349540 + 85422421 85422542 L1HS 6032 + 5911 6032 156083 121 chain 21997 chr14 107349540 + 85438658 85439240 MER51B 395 - 8 395 120246 104 1 0 97 1 0 15 11 10 45 247 55 20 0 1 4 3 2 34 chain 21636 chr14 107349540 + 85464256 85464619 THE1B 368 + 0 368 121632 116 2 1 60 59 66 63 7 6 56 chain 24142 chr14 107349540 + 85471177 85471437 AluYb8 318 - 6 266 109511 260 chain 18275 chr14 107349540 + 85479775 85480041 L1PB1 5432 - 316 589 132139 11 1 2 111 1 0 90 2 0 17 12 21 21 chain 15030 chr14 107349540 + 85480070 85480397 L1PB1 5432 + 5115 5413 141234 20 1 0 12 16 11 9 2 0 53 2 1 16 1 0 42 40 29 14 13 10 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 508172 chr14 107349540 + 85484752 85490823 L1PA5 6144 - 0 6144 6308 465 0 2 61 0 1 224 0 14 52 0 1 5 2 1 31 8 7 331 0 12 309 1 2 455 0 3 283 0 2 686 0 1 102 0 1 554 1 0 101 2 0 130 10 0 409 0 1 729 10 1 11 0 3 115 22 23 128 7 44 45 0 1 655 0 14 98 0 2 29 chain 13957 chr14 107349540 + 85499797 85500000 MER1A 529 - 8 210 144720 56 23 22 124 chain 37300 chr14 107349540 + 85512693 85513192 MER9a3 513 + 0 513 73078 18 0 2 231 17 10 13 0 18 141 5 6 74 chain 31340 chr14 107349540 + 85513501 85513874 THE1B-int 1605 + 1229 1605 81914 78 0 1 216 0 2 79 chain 42953 chr14 107349540 + 85544281 85545020 L1PA11 4918 - 351 1118 65473 13 1 0 15 13 9 10 22 16 16 2 1 13 2 0 36 11 11 20 29 27 52 10 0 268 5 0 130 26 85 45 chain 12454 chr14 107349540 + 85592742 85592899 MER47A 366 - 86 243 150447 157 chain 261896 chr14 107349540 + 85627570 85631292 L1PB1 5432 + 19 5420 15593 344 8 9 27 9 8 49 0 1 392 0 15 537 2 0 5 11 0 122 6 4 154 1 0 88 2 0 6 0 2 21 0 1 234 0 2 73 0 6 148 4 5 159 1 7 152 2 0 6 0 2 199 0 1 189 0 1522 23 1 3 77 16 36 66 7 6 67 15 7 10 3 11 92 11 157 39 7 11 23 1 0 10 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 3 0 8 14 5 18 3 1 4 1 0 14 7 5 19 2 1 20 1 0 13 1 0 16 chain 5525 chr14 107349540 + 85646214 85646494 LTR1C 686 + 38 280 189790 15 1 0 22 186 153 24 5 1 27 chain 5352 chr14 107349540 + 85651935 85652014 MADE1 96 - 0 96 191516 30 0 1 10 4 20 35 chain 4047 chr14 107349540 + 85660018 85660521 MLT1H1 527 + 11 494 206685 24 431 411 48 chain 14823 chr14 107349540 + 85663483 85663731 L1PA8 5853 + 5612 5853 141872 34 34 33 11 6 0 4 0 1 65 1 0 93 chain 21802 chr14 107349540 + 85666252 85666583 THE1B 368 - 13 368 121010 112 35 45 30 2 1 107 1 16 44 chain 166309 chr14 107349540 + 85677780 85679640 L1PA4 6152 - 0 1857 22484 6 3 0 1851 chain 15126 chr14 107349540 + 85680674 85680987 L1MA4 2864 + 1848 2159 140979 87 94 92 73 5 6 12 1 0 41 chain 31623 chr14 107349540 + 85714073 85714465 L1PA7 6471 - 2 396 81443 11 0 2 157 4 5 19 1 0 200 chain 28122 chr14 107349540 + 85727211 85727597 MLT2A1 477 - 87 474 92564 178 4 1 40 0 4 16 8 9 58 1 0 81 chain 160238 chr14 107349540 + 85727600 85729547 HERVL-int 5654 - 0 1959 23304 191 0 1 31 0 1 200 6 7 862 11 25 593 5 0 48 chain 27827 chr14 107349540 + 85729665 85730048 MLT2A1 477 - 93 477 93597 174 3 0 31 6 10 26 5 6 55 1 0 82 chain 6504 chr14 107349540 + 85738275 85738344 U3 216 + 0 69 181203 69 chain 47967 chr14 107349540 + 85740997 85741539 L1PA5 6144 - 0 541 60511 333 1 0 208 chain 81448 chr14 107349540 + 85754648 85755551 L1PA3long 6157 + 5212 6113 42990 686 2 0 215 chain 30091 chr14 107349540 + 85764728 85765046 AluYb8 318 - 0 318 84525 318 chain 20561 chr14 107349540 + 85790305 85790651 THE1B 368 - 12 368 125428 101 47 57 28 2 1 84 8 7 6 0 2 70 chain 4068 chr14 107349540 + 85805585 85805631 MADE1 96 + 0 46 206341 46 chain 22692 chr14 107349540 + 85813867 85814145 AluSg7 307 - 17 295 117116 278 chain 21631 chr14 107349540 + 85814651 85814906 AluY 311 + 27 283 121654 105 0 1 150 chain 128219 chr14 107349540 + 85818383 85819870 SVA_D 2077 - 0 2077 28517 300 0 2 322 5 461 37 2 39 24 0 1 19 2 0 110 1 62 68 0 40 567 5 0 25 chain 429482 chr14 107349540 + 85833297 85838448 L1PA7 6471 - 1 5176 9320 4 1 0 8 2 0 142 1 0 368 0 13 235 0 2 144 1 3 422 0 5 145 1 0 54 0 1 248 1 0 499 1 6 90 0 1 179 0 1 57 0 1 345 1 0 189 0 1 476 13 11 188 0 1 1336 chain 12259 chr14 107349540 + 85840858 85841001 MLT1A 405 + 249 392 151161 143 chain 30573 chr14 107349540 + 85879745 85880203 L1PA8 5853 + 5390 5853 83256 35 0 2 92 5 6 39 1 0 45 2 0 68 28 26 22 8 16 19 1 0 93 chain 28080 chr14 107349540 + 85898982 85899283 AluYk11 308 + 0 301 92714 301 chain 31265 chr14 107349540 + 85899292 85899651 L1PA4 6152 + 5781 6141 82052 257 0 1 102 chain 3244 chr14 107349540 + 85913379 85913415 MADE1 96 + 49 85 220120 36 chain 3280 chr14 107349540 + 85915828 85915865 MLT1N2 510 + 454 491 219368 37 chain 87044 chr14 107349540 + 85916111 85917142 L1PA7 6471 + 5435 6469 40757 46 0 1 11 0 2 128 3 0 75 0 2 523 3 4 242 chain 71171 chr14 107349540 + 85950903 85952001 L1PB2 3958 - 121 1208 47860 61 6 5 18 2 0 17 1 0 55 1 0 63 1 0 34 0 1 25 14 13 93 4 0 13 2 0 62 4 0 14 1 0 56 2 0 34 0 5 79 0 1 7 2 1 15 33 35 178 19 22 6 1 0 34 1 0 140 chain 21897 chr14 107349540 + 85952061 85952326 AluSp 311 - 46 311 120637 265 chain 50609 chr14 107349540 + 85953971 85954564 L1PA6 6164 + 5571 6162 58573 92 0 1 485 3 0 13 chain 16156 chr14 107349540 + 85960883 85961081 AluSg7 307 + 85 281 137879 47 2 0 149 chain 22243 chr14 107349540 + 85979530 85979915 THE1D 372 - 0 372 119157 138 6 12 28 1 0 5 21 23 81 53 33 52 chain 4341 chr14 107349540 + 85983839 85983895 MER58A 224 + 50 112 202710 29 0 6 27 chain 23429 chr14 107349540 + 86023164 86023517 THE1A 353 - 2 353 113482 217 17 15 6 0 2 17 8 7 38 5 6 30 3 1 12 chain 3034 chr14 107349540 + 86033762 86033795 MIR 256 + 8 41 224307 33 chain 29046 chr14 107349540 + 86055871 86056401 L1MA1 4479 - 374 909 88777 27 7 5 52 0 3 66 9 5 33 3 0 5 7 10 40 1 0 14 24 21 64 6 5 16 1 0 4 24 34 88 1 5 38 chain 3882 chr14 107349540 + 86153455 86153507 MLT1A 405 - 56 107 209140 15 1 0 36 chain 20071 chr14 107349540 + 86156121 86156364 L1PA7 6471 + 6226 6467 126915 34 2 0 207 chain 6321 chr14 107349540 + 86181783 86181855 L1PBa1 4058 - 3879 3951 182633 72 chain 5746 chr14 107349540 + 86188064 86188130 MER72 723 - 0 66 187676 66 chain 23209 chr14 107349540 + 86196033 86196306 AluSp 311 - 27 301 114647 95 0 1 178 chain 31632 chr14 107349540 + 86198780 86199186 LTR7 482 - 5 482 81430 171 0 1 10 0 31 39 0 1 109 8 46 69 chain 286035 chr14 107349540 + 86201009 86204531 HERVH-int 3825 - 1 3825 14287 486 8 218 39 9 11 393 1 0 234 0 1 144 0 1 962 0 1 497 13 2 55 25 26 36 5 66 17 0 31 16 0 1 10 1 0 7 1 0 10 0 3 11 0 1 60 9 12 93 15 16 31 1 0 333 chain 29723 chr14 107349540 + 86204548 86204945 LTR7 482 - 15 482 85749 170 0 31 41 0 1 109 23 61 54 chain 25637 chr14 107349540 + 86219356 86219709 THE1A 353 - 0 353 101553 92 1 2 61 1 0 17 9 10 61 1 0 110 chain 12504 chr14 107349540 + 86225758 86226121 L1PB1 5432 - 2 326 150227 4 1 0 4 1 0 18 2 1 12 2 1 17 8 7 20 2 0 10 47 34 6 2 0 15 14 7 37 1 0 16 2 1 37 1 2 13 18 12 12 1 0 6 1 0 24 1 0 8 chain 11791 chr14 107349540 + 86244355 86244507 LTR7B 505 - 59 211 153086 34 1 0 4 0 1 113 chain 387302 chr14 107349540 + 86270031 86275393 L1PB1 5432 - 19 5340 10542 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 23 11 1 6 2 0 17 1 0 43 1 0 11 7 6 53 2 0 9 16 11 9 1 0 26 3 0 7 1 2 51 1 0 4 1 2 57 0 1 203 2 1 163 3 0 41 0 14 539 0 4 88 9 6 189 24 4 79 0 1 107 0 8 92 0 1 154 3 4 79 1 0 63 1 2 241 0 10 53 1 0 348 6 4 126 27 32 676 18 18 108 11 14 33 4 0 15 1 0 15 0 10 42 1 0 4 24 8 68 0 5 51 1 2 377 0 1 255 13 13 15 12 11 47 11 10 126 25 5 124 7 8 179 chain 58405 chr14 107349540 + 86294833 86295499 L1PA4 6152 - 9 678 53746 650 1 4 15 chain 131496 chr14 107349540 + 86295505 86297013 SVA_D 2077 - 0 2070 27752 616 7 6 42 12 238 16 0 269 258 0 40 383 1 0 23 0 23 132 1 7 17 chain 32815 chr14 107349540 + 86300776 86301164 L1PA7 6471 + 6065 6455 79507 148 0 1 93 0 1 147 chain 26980 chr14 107349540 + 86310948 86311230 AluYa5 310 + 19 301 96348 282 chain 3742 chr14 107349540 + 86318227 86318272 Charlie1a 1436 - 283 328 211308 45 chain 5426 chr14 107349540 + 86329872 86329950 MADE1 96 - 1 95 190741 46 1 17 31 chain 555542 chr14 107349540 + 86351939 86357962 L1PA2 6032 + 1 6032 769 1119 0 1 2020 1 6 954 1 3 1928 chain 522995 chr14 107349540 + 86368273 86374774 L1PA7 6471 - 5 6471 4866 155 3 4 178 0 9 358 1 0 141 1 0 618 0 1 46 2 1 383 0 1 119 1 0 443 0 1 178 0 1 246 0 1 393 1 2 288 4 5 211 2 0 46 1 2 158 2 3 141 7 6 280 13 12 281 0 1 396 6 7 34 0 1 525 1 0 73 1 2 66 0 1 24 0 1 100 54 17 103 14 0 403 chain 421291 chr14 107349540 + 86394616 86400060 HERVL-int 5654 - 0 5654 9504 48 2 7 89 42 0 106 2 7 26 1 0 219 1 2 36 0 8 347 1 0 111 0 1 93 0 1 134 6 209 416 2 1 404 0 1 86 7 0 102 51 57 207 0 6 215 0 2 20 19 30 238 8 0 53 1 3 157 21 20 28 6 5 200 0 1 521 0 1 466 0 12 27 5 8 436 2 5 53 1 0 252 7 8 64 1 0 8 0 3 74 2 0 20 chain 32335 chr14 107349540 + 86400064 86400499 MLT2A1 477 - 8 477 80295 29 23 55 181 0 1 5 0 1 17 0 1 9 4 2 21 0 1 146 chain 18583 chr14 107349540 + 86403534 86403773 LTR8 732 + 11 267 131277 4 0 1 16 0 9 35 0 1 80 0 6 104 chain 46086 chr14 107349540 + 86412303 86412802 L1PA4 6152 + 5652 6151 61959 499 chain 511734 chr14 107349540 + 86435385 86441536 L1PA6 6164 - 4 6164 6006 12 0 1 141 5 4 441 0 1 55 7 11 74 1 0 170 10 1 35 0 2 502 1 2 65 1 0 103 1 0 165 1 3 155 0 2 116 0 1 394 0 1 9 3 0 156 0 1 6 0 1 230 1 0 722 0 6 757 0 1 1037 0 2 265 2 1 90 0 1 418 chain 6957 chr14 107349540 + 86486238 86486389 MLT2B3 573 - 424 573 177766 13 3 0 5 0 3 36 42 40 52 chain 27268 chr14 107349540 + 86490971 86491274 L1PA5 6144 - 1157 1461 95376 117 0 1 186 chain 100843 chr14 107349540 + 86491275 86492417 L1PA5 6144 + 4999 6144 36550 295 0 5 701 1 0 6 1 0 138 chain 505960 chr14 107349540 + 86508696 86515110 L1PA7 6471 - 10 6471 6466 151 1 2 73 3 5 530 0 2 4 0 1 74 1 3 282 0 2 196 4 0 6 1 6 175 1 0 103 17 16 258 12 13 253 0 1 113 0 1 187 5 6 902 0 1 458 7 0 151 5 2 281 1 5 61 6 4 178 6 10 316 10 13 122 0 1 174 3 2 56 0 3 189 16 17 67 6 5 457 3 4 34 3 5 67 0 1 132 6 38 70 24 19 153 chain 9093 chr14 107349540 + 86534088 86534201 Tigger2 2703 + 2536 2649 165107 113 chain 538573 chr14 107349540 + 86540841 86546858 L1PA3long 6157 - 5 6152 3058 2861 1 0 1027 0 2 1358 8 136 614 0 1 148 chain 30531 chr14 107349540 + 86552439 86552803 L1PA6 6164 - 4 372 83367 59 0 1 81 0 1 190 0 2 34 chain 22171 chr14 107349540 + 86558974 86559318 THE1B 368 + 0 348 119489 18 1 0 46 1 4 43 5 6 47 6 5 30 0 1 10 0 4 16 1 0 12 1 0 60 11 10 36 chain 534597 chr14 107349540 + 86562280 86568380 L1PA3long 6157 - 0 6147 3641 274 1 0 64 0 1 359 5 0 155 0 5 1610 2 1 517 1 0 907 0 2 472 78 0 781 4 0 101 1 129 227 1 0 138 0 1 258 1 2 143 chain 545024 chr14 107349540 + 86571803 86577838 L1PA2 6032 - 4 6027 2070 697 5 0 1571 2 0 199 2 1 517 1 0 1731 1 0 942 1 0 114 1 0 251 chain 2657 chr14 107349540 + 86581671 86581719 L1PA15 4387 - 236 283 230927 12 9 8 27 chain 23872 chr14 107349540 + 86626826 86627204 L1PB2 3958 - 405 774 111071 102 3 0 12 2 0 30 14 19 16 6 0 13 1 0 53 4 1 48 1 2 73 chain 121559 chr14 107349540 + 86637016 86638902 L1PB1 5432 + 3553 5422 30518 169 1 7 218 26 0 15 9 8 287 0 11 36 0 1 72 5 3 106 18 30 93 0 1 16 4 0 170 8 0 7 22 31 157 7 6 6 0 1 93 6 5 11 1 0 22 1 0 9 1 0 14 5 1 9 3 1 51 2 1 15 7 21 18 0 1 4 1 0 16 2 0 6 42 30 14 3 1 26 1 0 19 14 12 18 chain 75357 chr14 107349540 + 86640634 86641644 THE1B-int 1605 + 38 1592 45839 126 7 548 143 4 5 476 0 1 130 26 27 98 chain 148011 chr14 107349540 + 86653130 86654800 L1PA5 6144 + 4474 6143 24877 820 1 0 28 0 1 568 3 2 250 chain 17367 chr14 107349540 + 86664076 86664280 L1PA5 6144 + 5939 6143 134606 204 chain 268946 chr14 107349540 + 86664820 86668081 L1PA6 6164 - 6 4091 15235 188 1 9 18 0 809 34 0 1 4 2 1 439 2 6 277 1 5 91 0 3 879 11 0 90 1 0 87 2 0 27 0 1 18 1 0 61 2 1 518 5 9 11 4 5 48 1 2 113 0 4 65 0 1 260 chain 4569 chr14 107349540 + 86684392 86684477 MADE1 96 - 1 96 200010 36 9 25 11 6 0 23 chain 111797 chr14 107349540 + 86710921 86712156 L1PA3long 6157 - 1177 2409 33723 53 0 1 1098 4 0 80 chain 106144 chr14 107349540 + 86712156 86713317 L1PA3long 6157 + 4982 6143 35202 1161 chain 45483 chr14 107349540 + 86722120 86722668 LTR6B 557 + 0 557 62514 51 0 5 303 0 1 41 0 1 7 1 0 86 0 1 4 0 1 33 0 1 22 chain 2587 chr14 107349540 + 86726699 86726837 L1ME2 1516 - 673 802 231842 26 93 84 19 chain 33684 chr14 107349540 + 86732909 86733343 L1PA10 4194 + 3733 4161 78121 344 2 0 39 3 0 34 1 0 11 chain 38067 chr14 107349540 + 86736809 86737254 LTR7C 471 + 0 449 72035 218 0 3 48 0 1 179 chain 552069 chr14 107349540 + 86778576 86784721 L1PA3long 6157 + 6 6157 1184 357 1 2 161 4 0 622 0 6 419 3 6 4578 chain 21936 chr14 107349540 + 86786720 86787078 THE1B 368 - 0 368 120475 82 3 4 33 48 58 22 7 6 163 chain 49738 chr14 107349540 + 86789018 86789592 L1PA4 6152 + 5574 6152 59202 96 0 3 330 0 1 148 chain 5806 chr14 107349540 + 86804006 86804130 L1MA3 4352 - 48 173 187079 16 1 0 6 1 0 22 2 0 24 4 5 11 16 20 21 chain 16190 chr14 107349540 + 86806870 86807125 L1PA13 3608 - 123 367 137785 19 1 0 18 2 0 5 3 1 46 2 0 10 12 11 40 1 0 62 2 0 32 chain 16415 chr14 107349540 + 86839864 86840217 THE1C 375 + 0 375 137166 47 0 6 6 57 59 61 57 70 74 0 1 51 chain 32615 chr14 107349540 + 86867178 86867562 L1PA7 6471 + 6067 6451 79825 384 chain 21840 chr14 107349540 + 86873432 86873802 THE1D 372 + 0 372 120857 51 38 39 14 0 1 79 14 16 25 1 0 90 7 6 51 chain 22351 chr14 107349540 + 86881529 86881879 THE1B 368 - 0 364 118698 58 0 4 18 4 5 21 26 34 14 0 1 4 10 11 29 1 0 165 chain 114137 chr14 107349540 + 86882443 86883890 HERVL-int 5654 - 0 1498 33054 135 1 6 105 1 0 37 1 0 609 0 6 260 2 0 41 3 4 162 0 45 61 2 0 27 chain 43037 chr14 107349540 + 86883890 86884372 L1PA3long 6157 + 5670 6152 65371 482 chain 44698 chr14 107349540 + 86892843 86893399 L1PA7 6471 - 3 569 63380 16 1 0 386 1 2 99 5 15 48 chain 104709 chr14 107349540 + 86937385 86938537 L1PA3long 6157 - 3077 4231 35565 446 0 1 362 0 1 344 chain 279096 chr14 107349540 + 86938537 86941628 L1PA3long 6157 + 3062 6155 14686 114 0 1 2201 0 1 776 chain 3072 chr14 107349540 + 86960337 86960390 L1MA4 2864 - 61 112 223530 30 8 6 15 chain 10865 chr14 107349540 + 87001574 87001694 L1PA4 6152 + 6022 6142 156720 120 chain 4288 chr14 107349540 + 87002871 87003057 MLT1F 544 + 105 282 203368 50 120 111 16 chain 143167 chr14 107349540 + 87029000 87030781 L1PA8A 6298 - 8 1809 25625 142 0 2 166 0 1 97 0 2 308 0 1 80 0 3 502 0 3 158 2 0 105 0 6 14 5 6 50 0 3 152 chain 24352 chr14 107349540 + 87048677 87048948 L1P1 4361 - 38 307 108360 18 1 0 155 1 0 96 chain 58227 chr14 107349540 + 87048948 87049582 L1PA2 6032 + 5397 6031 53851 634 chain 68016 chr14 107349540 + 87056784 87057612 L1PA4 6152 - 4636 5476 49242 61 0 4 522 1 5 56 0 4 188 chain 410283 chr14 107349540 + 87057639 87062239 L1PA4 6152 + 1537 6143 9792 392 0 1 1253 1 0 2121 0 4 289 6 0 9 0 6 389 2 4 138 chain 2896 chr14 107349540 + 87071079 87071127 ERV3-16A3_LTR 481 + 162 209 227110 14 5 4 29 chain 302724 chr14 107349540 + 87074846 87078251 L1PA4 6152 - 24 3431 13290 89 0 1 146 1 0 534 0 1 1674 0 1 961 chain 22139 chr14 107349540 + 87094342 87094624 L1PA7 6471 - 2 284 119623 160 5 4 40 0 1 77 chain 14953 chr14 107349540 + 87100084 87100435 THE1B 368 - 6 362 141464 29 28 27 56 14 22 14 52 47 32 22 24 38 8 9 58 chain 15647 chr14 107349540 + 87147409 87147704 THE1B 368 + 0 309 139445 39 36 44 86 1 0 19 18 26 21 6 5 69 chain 19646 chr14 107349540 + 87160859 87161079 L1PA4 6152 + 4124 4344 128262 220 chain 162008 chr14 107349540 + 87161079 87162883 L1PA4 6152 + 4348 6151 23063 1030 1 0 773 chain 28390 chr14 107349540 + 87171955 87172362 MER4A1 472 + 51 458 91623 174 2 23 20 28 7 83 0 2 6 2 0 92 chain 25639 chr14 107349540 + 87183380 87183718 L1PA7 6471 + 6127 6470 101541 105 0 15 106 10 0 117 chain 3668 chr14 107349540 + 87194015 87194060 MLT2D 439 + 394 439 212435 45 chain 30074 chr14 107349540 + 87197929 87198340 LTR7 482 + 0 482 84583 69 9 46 109 0 1 8 0 31 155 12 14 49 chain 277850 chr14 107349540 + 87198342 87201871 HERVH-int 3825 + 0 3782 14756 265 1 0 68 1 0 62 26 25 24 8 0 15 54 292 12 0 2 15 0 3 648 9 0 24 0 2 13 1 0 106 5 0 472 0 2 36 10 15 248 4 8 29 20 32 24 0 1 103 7 15 282 0 1 623 0 1 314 chain 4969 chr14 107349540 + 87204667 87204751 MER92B 628 + 77 173 195492 37 1 2 20 6 17 20 chain 34927 chr14 107349540 + 87205456 87205889 MER4A1 472 - 17 472 76301 202 2 22 201 1 0 8 6 9 13 chain 504935 chr14 107349540 + 87211386 87217480 L1PA6 6164 - 12 6164 6540 638 0 1 198 0 1 665 1 0 1459 5 6 525 0 26 194 0 8 97 4 0 398 5 6 39 0 16 124 0 1 298 1 0 53 0 6 60 4 9 52 0 4 30 1 0 81 8 7 134 0 1 550 6 5 33 9 5 422 chain 7520 chr14 107349540 + 87217485 87217577 L1MA3 4352 - 3304 3396 174037 92 chain 32212 chr14 107349540 + 87235865 87236253 L1PA7 6471 + 6079 6464 80499 134 0 1 95 1 0 150 3 0 5 chain 25590 chr14 107349540 + 87240507 87240822 THE1B 368 + 53 368 101781 315 chain 4524 chr14 107349540 + 87256266 87256320 MER4E1 777 - 25 79 200509 54 chain 57034 chr14 107349540 + 87273790 87274439 L1PA5 6144 - 0 649 54515 649 chain 306628 chr14 107349540 + 87276221 87280076 L1PA8 5853 - 50 3938 13146 43 4 3 16 2 1 59 1 0 73 7 19 27 1 0 463 0 3 8 6 7 72 2 0 343 6 4 18 0 1 37 0 22 176 12 10 183 1 0 53 0 3 19 0 9 615 0 1 121 0 1 984 1 3 373 18 7 111 chain 19673 chr14 107349540 + 87307881 87308103 L1PA5 6144 + 5920 6142 128186 222 chain 3020 chr14 107349540 + 87317136 87317168 MER3 215 - 18 50 224601 32 chain 6254 chr14 107349540 + 87329647 87329724 MADE1 96 + 0 92 183138 45 0 15 32 chain 30109 chr14 107349540 + 87341231 87341549 AluYb8 318 - 0 318 84459 318 chain 131568 chr14 107349540 + 87344687 87346123 L1PA3long 6157 - 1 1436 27728 849 1 0 586 chain 5738 chr14 107349540 + 87395717 87395788 MLT1B 390 - 16 88 187754 63 0 1 8 chain 29380 chr14 107349540 + 87414453 87414837 MER1A 529 - 8 394 87169 46 9 12 258 1 0 70 chain 17877 chr14 107349540 + 87418575 87418800 L1PA7 6471 + 6240 6465 133171 72 1 2 137 0 1 7 2 0 6 chain 79007 chr14 107349540 + 87432103 87433242 MER11A 1151 + 0 1151 44060 79 0 8 47 89 0 94 1 0 66 0 11 21 0 2 204 0 13 137 6 9 13 8 10 29 0 4 68 1 2 17 1 59 101 0 1 90 1 0 66 chain 6610 chr14 107349540 + 87433242 87433324 THE1B-int 1605 + 1520 1603 180384 12 0 1 70 chain 30912 chr14 107349540 + 87436200 87436553 L1PA5 6144 + 5760 6120 82664 229 1 8 123 chain 310425 chr14 107349540 + 87441205 87445776 L1PA11 4918 + 60 4505 12987 11 7 8 34 1 0 17 3 1 26 7 1 7 0 6 7 1 0 35 2 0 5 2 1 277 1 3 120 1 0 131 1 0 138 21 22 109 0 1 269 11 7 59 1 0 248 6 10 56 0 5 3 130 0 19 0 1 116 0 1 388 18 18 13 7 1 25 5 9 43 0 3 133 0 3 90 2 0 26 0 1 145 1 0 4 2 4 45 0 3 652 7 9 5 2 0 95 7 8 184 39 40 7 2 0 40 34 32 56 1 0 78 11 12 44 0 1 172 0 1 72 26 25 27 4 0 67 9 12 62 2 0 18 5 4 14 chain 21708 chr14 107349540 + 87453509 87453769 AluY 311 + 15 277 121355 116 0 2 144 chain 33601 chr14 107349540 + 87459947 87460626 L1PA14 3548 + 2845 3485 78235 32 0 2 41 7 7 11 3 1 10 1 0 4 2 0 48 7 4 70 45 41 15 2 0 6 1 0 14 0 1 56 0 1 12 1 0 110 17 12 25 13 11 14 7 5 17 1 0 12 21 10 18 6 0 10 1 0 15 0 1 4 chain 55838 chr14 107349540 + 87482361 87483074 L1PA7 6471 - 1 715 55225 13 2 0 128 8 9 101 0 4 204 0 1 14 9 5 82 0 1 152 chain 65524 chr14 107349540 + 87486485 87487313 LTR5_Hs 974 + 0 846 50331 17 0 4 438 0 4 35 1 10 148 0 1 119 7 7 63 chain 5061 chr14 107349540 + 87500582 87500735 Tigger7 736 + 127 346 194528 24 5 4 18 66 133 40 chain 73197 chr14 107349540 + 87504922 87505941 L1PB2 3958 + 2811 3838 46925 47 0 1 62 0 21 34 0 2 110 0 5 214 2 0 56 1 0 11 5 0 65 18 12 94 5 3 69 1 0 56 10 9 72 2 0 21 1 0 63 chain 4199 chr14 107349540 + 87520658 87520710 MLT2D 439 - 88 140 204555 52 chain 24563 chr14 107349540 + 87524377 87524720 THE1A 353 + 0 342 107179 84 4 5 21 1 0 29 3 2 61 2 0 7 5 7 126 chain 19593 chr14 107349540 + 87531197 87531515 THE1D 372 - 0 372 128403 178 34 38 24 5 9 17 4 50 56 chain 29142 chr14 107349540 + 87550366 87550749 MLT2A1 477 - 92 474 88356 181 0 1 23 1 2 9 5 2 164 chain 25038 chr14 107349540 + 87585107 87585401 AluYa5 310 + 10 305 104606 121 0 1 173 chain 26302 chr14 107349540 + 87586188 87586560 MER57B1 401 + 0 369 98823 136 0 1 80 31 27 125 chain 11329 chr14 107349540 + 87586592 87586730 L1PA5 6144 + 6001 6139 154963 138 chain 27300 chr14 107349540 + 87643638 87644032 MSTA 426 + 0 414 95274 100 1 14 40 0 6 49 5 0 25 1 7 14 6 9 7 3 0 143 chain 44172 chr14 107349540 + 87655731 87656280 MLT2A2 560 + 0 559 63982 180 1 0 219 5 16 144 chain 3689 chr14 107349540 + 87686101 87686146 MER53 195 - 147 192 212104 45 chain 7391 chr14 107349540 + 87690838 87691102 L1MC1 2226 + 1946 2183 174822 34 9 6 6 2 0 53 23 17 19 100 84 18 chain 30211 chr14 107349540 + 87701034 87701444 LTR7 482 - 0 482 84160 176 0 1 15 0 32 33 0 1 109 30 68 47 chain 301412 chr14 107349540 + 87702699 87706724 HERVH-int 3825 - 0 3825 13349 225 0 2 583 1 0 45 189 24 142 40 41 5 1 0 461 1 0 195 15 16 75 0 4 291 4 31 215 4 12 27 9 0 652 1 0 80 2 1 15 2 0 27 14 11 14 4 1 12 2 1 13 3 1 6 50 0 7 4 0 10 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 72 0 5 256 chain 3940 chr14 107349540 + 87712152 87712207 L1P3 4156 - 1044 1103 208262 14 3 7 38 chain 5507 chr14 107349540 + 87725144 87725204 THE1D-int 1627 + 1567 1627 189973 60 chain 51245 chr14 107349540 + 87741384 87741958 L1PA5 6144 - 2 576 58156 574 chain 29550 chr14 107349540 + 87749603 87749913 AluYa5 310 - 0 310 86422 310 chain 14882 chr14 107349540 + 87757564 87757757 L1PA16 3655 - 62 252 141683 15 3 0 175 chain 18567 chr14 107349540 + 87767829 87768190 L1PB2 3958 + 3484 3838 131316 61 67 66 6 1 0 64 2 1 68 8 6 18 6 5 27 1 0 32 chain 149058 chr14 107349540 + 87781211 87782893 L1PA4 6152 - 0 1691 24746 6 4 0 844 0 4 99 1 0 457 0 11 219 1 0 51 chain 537246 chr14 107349540 + 87821088 87827199 L1PA4 6152 - 0 6150 3283 150 0 4 7 2 1 812 5 4 1180 0 3 404 0 1 694 1 0 1225 1 19 412 1 0 81 5 7 55 0 1 531 0 1 21 4 0 7 1 5 438 0 13 74 chain 534210 chr14 107349540 + 87879915 87886045 L1PA4 6152 - 19 6140 3687 479 0 1 345 0 4 952 0 4 1054 4 0 219 0 1 601 10 6 148 2 0 1160 0 3 122 2 1 453 1 0 44 4 0 74 12 6 444 chain 527360 chr14 107349540 + 87889656 87895643 L1PA3long 6157 + 0 6156 4462 153 6 7 547 0 7 62 0 128 244 0 6 57 0 5 89 0 9 533 0 5 310 0 3 711 0 1 364 1 5 594 0 14 306 0 3 828 1 0 192 22 1 817 0 5 150 chain 29890 chr14 107349540 + 87914467 87914779 AluYb8 318 - 6 318 85133 312 chain 25022 chr14 107349540 + 87945563 87945920 THE1B 368 - 0 367 104671 41 0 10 24 1 0 114 0 1 6 1 0 113 0 15 26 17 3 14 chain 17816 chr14 107349540 + 87984982 87985341 THE1D 372 + 0 360 133348 40 13 1 13 12 11 68 89 101 19 0 2 105 chain 19833 chr14 107349540 + 88006313 88006680 THE1B 368 - 0 360 127701 56 17 14 54 22 20 6 0 4 21 31 24 52 11 12 97 chain 7659 chr14 107349540 + 88016334 88016425 L1PA8 5853 - 0 91 173168 91 chain 8843 chr14 107349540 + 88020417 88020551 L1MA4 2864 + 2240 2372 166412 88 22 20 24 chain 26069 chr14 107349540 + 88028762 88029114 THE1A 353 + 0 352 99755 107 4 3 121 10 11 110 chain 123432 chr14 107349540 + 88029116 88030684 THE1A-int 1579 + 1 1571 29903 43 0 2 61 0 3 178 9 7 453 1 0 5 4 5 240 1 0 188 1 0 211 0 1 173 chain 27217 chr14 107349540 + 88030692 88031036 THE1A 353 + 0 343 95533 107 4 3 233 chain 55484 chr14 107349540 + 88047715 88048792 MER4E1 777 + 9 764 55423 14 0 2 146 8 7 66 1 0 4 4 5 210 4 3 50 319 0 12 27 26 46 2 0 164 chain 20534 chr14 107349540 + 88064831 88065178 MSTA 426 - 21 410 125533 66 27 47 56 2 0 18 16 16 54 16 40 92 chain 57570 chr14 107349540 + 88099586 88100365 MER4E1 777 - 8 777 54200 114 6 7 97 28 12 414 0 4 96 0 1 24 chain 15659 chr14 107349540 + 88113606 88113907 THE1B 368 - 61 368 139400 57 92 96 84 2 4 66 chain 93663 chr14 107349540 + 88200236 88201661 LTR12C 1709 - 0 1709 38454 63 5 7 12 1 0 83 2 12 120 0 4 49 23 19 46 1 0 57 24 0 9 20 13 94 0 49 55 0 278 169 2 1 84 4 1 13 1 0 6 14 1 60 4 0 125 12 4 170 2 1 16 50 59 29 chain 4251 chr14 107349540 + 88207484 88207606 MER58D 378 - 172 292 203866 43 2 0 7 0 1 5 49 48 16 chain 22320 chr14 107349540 + 88228355 88228736 THE1D 372 + 0 357 118824 59 8 0 16 19 0 113 51 51 9 0 3 106 chain 4666 chr14 107349540 + 88230993 88231085 MSTA 426 - 125 214 198900 35 26 23 31 chain 535088 chr14 107349540 + 88241810 88247920 L1PA5 6144 - 4 6141 3582 255 1 0 590 0 4 1357 0 1 213 0 1 821 0 5 476 0 1 472 0 1 645 13 14 1062 0 2 64 7 21 110 7 5 17 chain 28358 chr14 107349540 + 88262539 88262967 MER57A1 433 - 0 433 91740 62 14 17 64 0 2 36 13 13 31 11 0 8 7 18 182 chain 9671 chr14 107349540 + 88267839 88267972 L1PA7 6471 - 133 270 162238 28 0 2 34 5 7 66 chain 33528 chr14 107349540 + 88270592 88271051 LTR2 463 + 0 463 78351 19 1 2 36 2 1 134 0 11 37 6 0 141 4 5 25 1 0 20 9 8 24 chain 24905 chr14 107349540 + 88272645 88272998 THE1D 372 - 0 364 105314 33 0 1 114 31 37 55 0 4 120 chain 47912 chr14 107349540 + 88280562 88281118 LTR6B 557 + 0 557 60550 38 0 1 11 1 0 309 0 1 197 chain 7382 chr14 107349540 + 88293292 88293377 L1PA5 6144 - 4 89 174890 85 chain 5487 chr14 107349540 + 88308702 88308939 L1MC3 1789 - 486 695 190149 41 157 129 39 chain 161768 chr14 107349540 + 88324423 88326504 L1PA7 6471 + 4426 6459 23096 76 72 21 38 17 16 225 5 4 149 1 0 399 1 0 248 8 15 81 0 2 437 1 0 171 7 0 9 0 7 63 1 0 72 chain 20891 chr14 107349540 + 88338596 88338897 THE1B 368 - 61 368 124315 67 1 0 8 1 0 18 4 8 7 0 3 27 1 0 97 8 9 38 0 1 24 chain 3294 chr14 107349540 + 88389682 88389723 LTR86B2 428 + 365 406 219098 41 chain 266558 chr14 107349540 + 88395449 88398768 L1PA8A 6298 + 2933 6290 15363 32 0 7 169 11 15 6 2 0 157 0 4 43 1 0 81 0 5 40 0 1 204 0 2 122 10 14 24 1 0 12 0 1 213 0 6 171 6 5 947 0 1 91 5 6 93 0 2 5 2 0 50 7 11 15 0 3 51 1 0 26 0 2 638 5 4 78 chain 5809 chr14 107349540 + 88418306 88418393 L1PB1 5432 + 5335 5422 187049 11 1 0 24 1 0 22 0 3 9 1 0 18 chain 6856 chr14 107349540 + 88424172 88424268 L1PB 1623 + 1360 1455 178534 86 1 0 9 chain 9474 chr14 107349540 + 88426081 88426411 L1MA6 2487 + 2136 2401 163197 53 59 43 38 115 70 39 3 0 18 1 0 4 chain 19844 chr14 107349540 + 88436960 88437243 AluY 311 + 38 306 127668 95 30 22 113 8 1 37 chain 4416 chr14 107349540 + 88437949 88438101 MER33 330 - 121 286 201726 34 0 1 12 85 97 21 chain 7121 chr14 107349540 + 88447291 88447375 L1PB1 5432 - 405 489 176612 84 chain 20516 chr14 107349540 + 88447380 88447778 L1PB1 5432 + 5047 5411 125582 34 2 0 22 13 11 24 1 0 6 1 0 12 9 5 6 2 0 53 2 1 16 1 0 44 1 0 15 1 0 6 16 6 19 3 0 19 3 1 23 1 0 21 1 0 13 1 0 7 chain 3086 chr14 107349540 + 88483275 88483313 MLT1K 546 + 172 210 223166 38 chain 28976 chr14 107349540 + 88485074 88485416 L1PA7 6471 + 6130 6467 89106 243 0 1 87 6 0 6 chain 19775 chr14 107349540 + 88498231 88498452 L1PA4 6152 + 5931 6152 127891 221 chain 42383 chr14 107349540 + 88499285 88499762 L1PA2 6032 - 3 475 66175 8 5 0 9 1 0 137 0 1 317 chain 51198 chr14 107349540 + 88509376 88509954 L1PA4 6152 - 0 579 58188 113 0 1 465 chain 98963 chr14 107349540 + 88517886 88519364 L1PB1 5432 - 44 1501 37035 18 1 0 23 3 1 14 1 0 5 3 1 11 3 58 21 1 0 15 2 1 52 2 0 9 2 0 3 2 0 12 8 6 22 31 0 10 39 24 63 11 0 264 1 0 4 1 2 121 3 0 86 0 2 82 0 4 150 9 1 161 0 1 134 0 1 75 chain 58459 chr14 107349540 + 88548623 88549264 L1PA3long 6157 + 5503 6144 53714 641 chain 28840 chr14 107349540 + 88557725 88558079 THE1B 368 + 0 368 89721 40 0 15 117 1 0 196 chain 28075 chr14 107349540 + 88583352 88583661 AluYf4 310 - 0 309 92741 309 chain 24771 chr14 107349540 + 88586824 88587119 AluY 311 + 11 305 106053 121 0 1 91 2 0 81 chain 527381 chr14 107349540 + 88588557 88594690 L1PA5 6144 - 5 6144 4459 149 10 11 1037 1 0 56 0 1 628 0 3 796 0 1 127 3 0 78 0 5 931 4 3 474 0 5 665 30 0 437 1 0 564 3 15 18 1 15 120 chain 69865 chr14 107349540 + 88597348 88598135 L1PA5 6144 - 13 794 48454 22 7 1 758 chain 133416 chr14 107349540 + 88609765 88612275 HUERS-P2-int 2744 + 32 2741 27336 22 1 0 32 2 0 5 1 0 32 0 1 20 7 6 13 3 0 10 28 24 66 87 64 47 16 7 48 9 8 8 2 0 20 2 0 26 1 0 6 9 4 49 6 7 30 5 7 53 0 1 51 1 0 190 24 20 105 1 0 263 8 7 9 1 2 11 0 1 104 363 0 284 0 583 42 0 1 107 19 35 49 2 0 35 4 1 20 0 34 5 0 1 8 2 1 38 3 0 7 1 0 5 1 0 13 32 27 8 2 0 26 chain 11051 chr14 107349540 + 88611205 88611330 HUERS-P2-int 2744 + 1413 1538 156012 125 chain 8026 chr14 107349540 + 88611330 88611427 HUERS-P2-int 2744 + 1180 1277 170441 97 chain 3393 chr14 107349540 + 88611451 88611490 HUERS-P2-int 2744 + 1301 1340 217250 39 chain 3679 chr14 107349540 + 88612525 88612566 LTR1 825 + 452 493 212248 41 chain 5077 chr14 107349540 + 88623305 88623366 MER5A1 166 - 3 64 194329 61 chain 26890 chr14 107349540 + 88688327 88688677 THE1A 353 - 0 353 96669 155 1 0 88 1 0 65 5 10 35 chain 4208 chr14 107349540 + 88707644 88707745 MIRb 242 + 76 179 204438 14 5 4 15 0 1 11 26 28 30 chain 28250 chr14 107349540 + 88746081 88746432 THE1A 353 + 0 353 92107 110 1 0 187 1 4 52 chain 37826 chr14 107349540 + 88750667 88751195 MLT2A2 560 - 0 558 72372 99 0 3 40 8 19 38 0 9 172 10 11 54 0 1 27 4 5 63 0 4 13 chain 45858 chr14 107349540 + 88753686 88754479 L1PB1 5432 - 10 748 62171 18 1 0 13 1 0 18 8 7 20 2 0 14 1 0 5 7 5 14 22 12 15 6 12 33 18 16 12 1 0 40 2 0 9 8 4 9 1 0 8 1 0 24 53 11 223 0 10 186 chain 30257 chr14 107349540 + 88820801 88821185 THE1B-int 1605 - 5 389 84036 140 0 1 144 8 7 92 chain 517495 chr14 107349540 + 88835896 88842383 L1PA7 6471 + 2 6465 5424 410 23 2 101 7 8 186 23 24 886 0 1 102 0 1 27 8 3 394 0 7 107 1 0 4 0 1 54 0 1 206 12 11 101 0 2 105 6 4 638 0 3 106 1 0 32 1 0 307 1 0 173 2 0 133 4 5 427 1 0 4 0 1 4 0 1 882 0 6 149 0 3 47 0 3 59 0 2 137 16 23 349 41 13 202 2 0 6 chain 57914 chr14 107349540 + 88849829 88850560 MER4E 760 - 0 760 54026 69 0 18 90 0 6 41 7 22 70 1 0 35 0 1 25 1 0 213 9 0 170 chain 21439 chr14 107349540 + 88864184 88864441 AluY 311 + 39 298 122371 84 0 1 8 0 1 165 chain 41236 chr14 107349540 + 88864519 88864978 L1PA3long 6157 + 5693 6152 67604 459 chain 7677 chr14 107349540 + 88867754 88867887 L1MA9 1812 + 84 216 173064 20 29 28 84 chain 414518 chr14 107349540 + 88872970 88878045 L1PA7 6471 - 10 6341 9683 133 1 0 4 3 11 233 13 5 373 0 2 76 1 4 17 0 4 614 1 0 30 1 0 283 6 10 28 1 0 629 1 4 36 0 9 198 0 4 163 0 3 772 0 1 120 2 1 26 2 1 29 0 1202 333 3 0 5 1 4 83 0 18 52 8 9 101 0 7 195 0 1 102 6 7 107 1 2 157 2 0 123 chain 32592 chr14 107349540 + 88878600 88879031 MLT2A1 477 - 0 477 79865 6 0 4 41 3 41 208 8 12 165 chain 18023 chr14 107349540 + 88897878 88898199 L1MA5A 2387 - 91 382 132796 63 29 1 17 3 0 29 1 0 31 3 1 31 14 17 38 1 0 35 1 3 25 chain 55469 chr14 107349540 + 88902574 88903465 L1MA1 4479 - 289 1132 55429 18 8 1 12 21 3 4 0 1 9 1 0 35 2 0 29 5 4 53 0 3 61 7 5 8 1 0 18 1 0 10 25 25 32 1 0 13 2 0 20 1 0 71 5 0 16 2 0 24 1 0 37 0 2 20 0 1 142 2 0 119 8 0 47 chain 118159 chr14 107349540 + 88907194 88909268 L1PB1 5432 - 10 2596 31744 4 0 1 13 1 0 13 1 0 21 1 0 24 2 0 11 12 9 18 27 15 13 1 0 44 1 0 15 2 1 52 18 12 12 1 0 6 1 0 21 36 14 98 1 0 360 0 1 20 1 0 80 1 2 24 5 10 283 357 911 80 1 2 299 0 4 93 chain 489196 chr14 107349540 + 88909829 88915252 L1PA3long 6157 - 1 5554 7399 137 0 7 9 9 1 2485 0 2 68 0 1 2542 0 128 173 chain 10963 chr14 107349540 + 88916304 88916444 L1PB 1623 - 1208 1347 156348 12 1 0 127 chain 528880 chr14 107349540 + 88922081 88928190 L1PA4 6152 - 9 6142 4314 104 0 1 34 0 1 310 0 2 1377 1 0 747 1 4 271 1 0 134 0 4 766 0 4 71 0 4 460 1 5 59 6 8 1660 0 1 106 chain 15011 chr14 107349540 + 88954154 88954329 AluSg4 309 + 125 300 141288 175 chain 11889 chr14 107349540 + 88973686 88973932 Tigger3a 397 - 55 343 152656 22 0 2 26 30 0 46 11 16 47 0 4 19 1 11 10 14 65 20 chain 2971 chr14 107349540 + 88985693 88985729 MER3 215 - 5 41 225638 36 chain 18842 chr14 107349540 + 88994860 88995187 THE1B 368 + 0 368 130539 44 0 15 5 0 2 52 0 11 43 2 1 25 42 52 49 0 2 27 9 11 29 chain 163520 chr14 107349540 + 88995777 88998651 L1PBa 3878 + 994 3225 22874 265 316 0 106 1 2 247 5 0 9 5 4 72 1 0 241 3 0 5 7 10 345 11 10 113 28 31 47 0 1 11 314 0 25 29 6 43 1 3 117 1 0 5 3 17 71 8 13 227 8 1 184 chain 22532 chr14 107349540 + 89025745 89026026 AluSc 308 + 9 298 117883 11 1 9 269 chain 4139 chr14 107349540 + 89028260 89028387 MLT1E1A 663 + 432 551 205384 12 1 0 19 64 57 31 chain 23453 chr14 107349540 + 89034635 89035011 THE1D 372 - 0 372 113365 109 0 25 45 0 3 26 2 0 30 40 0 42 10 20 72 chain 22866 chr14 107349540 + 89038023 89038311 AluSc5 308 + 0 284 116256 92 4 0 192 chain 24741 chr14 107349540 + 89083487 89083784 AluSp 311 - 9 306 106217 32 1 0 212 1 0 6 0 1 31 0 1 14 chain 23605 chr14 107349540 + 89086029 89086308 AluSq10 312 - 17 312 112553 56 0 16 223 chain 179331 chr14 107349540 + 89119212 89121413 L1PA7 6471 - 1570 3796 21049 47 2 1 175 0 4 764 1 3 5 0 1 41 12 18 6 1 0 75 0 4 44 0 3 258 0 3 172 8 7 317 5 6 54 0 4 214 chain 38036 chr14 107349540 + 89121413 89121902 L1PA7 6471 + 4897 5391 72079 50 1 6 21 6 5 226 1 2 184 chain 92184 chr14 107349540 + 89121902 89122969 L1PA7 6471 + 5392 6468 38908 225 1 4 19 0 4 54 0 2 768 chain 275772 chr14 107349540 + 89136707 89143055 L1PA10 4194 + 376 4161 14881 17 0 3 88 4 0 278 15 16 82 7 8 20 5 0 81 21 35 152 1 0 30 1 2 99 0 5 228 6 9 89 1 0 24 0 1 117 2 0 5 0 2 192 3 0 56 6 10 83 1 2 6 1 0 110 0 4 399 1 0 15 6 7 6 1 0 20 0 4 12 0 8 216 0 1 211 1 0 96 0 2 219 0 10 183 10 9 144 7 8 100 1 4 47 5 7 36 0 1 16 2614 4 67 1 0 34 3 0 22 3 0 5 0 3 4 1 0 11 chain 22377 chr14 107349540 + 89150580 89150813 AluYa5 310 - 77 310 118599 233 chain 7924 chr14 107349540 + 89152649 89152735 L1PA5 6144 + 6036 6122 171487 86 chain 24366 chr14 107349540 + 89164081 89164372 AluSp 311 - 14 303 108284 165 2 0 124 chain 3423 chr14 107349540 + 89173374 89173419 L1MC4 1079 - 319 363 216713 13 1 0 31 chain 13821 chr14 107349540 + 89177548 89177717 THE1D 372 + 0 170 145178 160 0 1 9 chain 2086 chr14 107349540 + 89186143 89186171 L1PA10 4194 + 2595 2623 237772 28 chain 39846 chr14 107349540 + 89186171 89186676 L1PA10 4194 + 2624 3131 69541 413 6 8 86 chain 14542 chr14 107349540 + 89186676 89186853 L1PA10 4194 + 3137 3314 142747 177 chain 9862 chr14 107349540 + 89186853 89186983 L1PA10 4194 + 3317 3447 161275 130 chain 9893 chr14 107349540 + 89186986 89187105 L1PA10 4194 + 3452 3570 161109 92 1 0 26 chain 41644 chr14 107349540 + 89187105 89187676 L1PA10 4194 + 3571 4149 67096 275 0 5 79 10 14 7 0 2 129 13 12 22 3 0 33 chain 9068 chr14 107349540 + 89191416 89191610 L1MB3 1562 + 1366 1523 165224 25 8 0 11 2 0 19 44 17 85 chain 12510 chr14 107349540 + 89194441 89194646 MER2 342 + 6 213 150205 45 30 30 35 2 1 85 0 3 8 chain 140905 chr14 107349540 + 89197423 89199002 L1PA5 6144 - 9 1597 26007 12 1 0 237 0 1 590 0 4 655 0 5 84 chain 5633 chr14 107349540 + 89209485 89209562 L1MA5A 2387 + 2230 2306 188742 66 1 0 10 chain 9380 chr14 107349540 + 89212169 89212274 L1PA7 6471 + 6347 6452 163655 105 chain 76529 chr14 107349540 + 89227542 89228499 L1PA7 6471 - 3 973 45198 7 7 0 138 8 0 6 1 10 140 0 3 32 0 1 276 0 3 131 1 4 93 0 3 18 0 6 99 chain 103503 chr14 107349540 + 89228500 89230108 L1P3 4156 + 2759 4063 35864 52 320 6 69 0 4 269 5 4 72 1 5 239 2 5 7 1 0 19 0 1 23 0 1 298 1 0 230 chain 88889 chr14 107349540 + 89232212 89233268 MER11B 1079 + 0 1079 40049 316 1 18 378 0 5 53 2 4 301 1 0 4 chain 53687 chr14 107349540 + 89243274 89244028 L1M1 2793 + 1291 2054 56553 107 10 6 160 0 4 126 17 18 29 0 4 18 0 3 84 12 3 108 0 3 10 0 1 56 0 6 17 chain 10694 chr14 107349540 + 89249461 89249633 THE1C-int 1605 + 915 1063 157438 107 31 7 34 chain 116751 chr14 107349540 + 89249656 89251400 L1MA2 4263 + 431 4114 32210 10 0 1 41 1 0 5 50 28 116 0 1 4 1 0 7 30 39 127 0 3 306 0 12 103 0 2 166 1 0 4 1 10 29 8 7 4 1 0 38 3 1 33 25 30 224 0 1907 93 0 27 149 1 0 6 2 1 93 7 0 17 0 2 28 1 0 9 chain 94677 chr14 107349540 + 89266208 89267336 L1PA7 6471 - 4 1138 38171 157 1 2 237 3 0 257 0 1 113 0 2 79 1 4 152 0 1 32 1 2 95 chain 4292 chr14 107349540 + 89274902 89274955 MLT2B2 565 - 512 565 203337 53 chain 3247 chr14 107349540 + 89284153 89284195 MER65A 464 - 420 462 220069 42 chain 37824 chr14 107349540 + 89285926 89286393 LTR15 485 - 7 479 72376 21 0 1 14 2 0 5 1 0 158 0 4 124 0 2 45 0 1 97 chain 7107 chr14 107349540 + 89306520 89306605 HY3 101 + 15 100 176702 85 chain 11419 chr14 107349540 + 89320866 89321017 Tigger4b 360 - 14 181 154606 39 0 16 112 chain 36059 chr14 107349540 + 89349907 89350363 LTR3B_ 500 + 27 483 74823 124 0 1 4 2 1 4 0 1 139 2 1 181 chain 56662 chr14 107349540 + 89350418 89351245 THE1D-int 1627 - 684 1600 54744 38 35 36 95 58 65 234 0 81 220 0 1 4 1 0 142 chain 16183 chr14 107349540 + 89351304 89351627 THE1D 372 - 28 372 137808 98 42 55 15 4 10 15 12 16 49 18 19 14 5 2 51 chain 21884 chr14 107349540 + 89364094 89364507 MSTA 426 - 12 426 120691 44 5 4 109 59 63 13 1 0 16 6 2 56 7 8 59 0 1 7 1 0 4 5 7 21 chain 22463 chr14 107349540 + 89408838 89409081 AluYg6 310 + 0 241 118183 123 2 0 118 chain 26946 chr14 107349540 + 89420489 89420899 MSTA 426 - 0 426 96466 171 19 17 55 2 0 20 4 0 7 3 7 18 25 45 86 chain 93461 chr14 107349540 + 89438696 89439775 L1PA5 6144 + 5046 6139 38516 248 1 0 25 0 1 57 0 14 748 chain 6912 chr14 107349540 + 89445441 89445514 tRNA-Ala-GCY 73 + 0 73 178098 73 chain 15687 chr14 107349540 + 89447224 89447394 L1HS 6032 - 0 170 139307 170 chain 17707 chr14 107349540 + 89471475 89471773 THE1B 368 - 62 368 133685 18 0 2 43 2 1 10 1 0 18 0 1 4 4 11 29 1 0 43 30 31 95 chain 24650 chr14 107349540 + 89487962 89488239 L1PA5 6144 + 5866 6143 106721 277 chain 38368 chr14 107349540 + 89504631 89505081 L1PA5 6144 + 5687 6144 71619 125 0 6 174 5 6 146 chain 8848 chr14 107349540 + 89509933 89510043 L1PA4 6152 + 6036 6152 166383 17 0 8 86 2 0 5 chain 25326 chr14 107349540 + 89513324 89513631 AluSc 308 + 0 308 103087 41 0 2 49 0 1 39 2 0 176 chain 9379 chr14 107349540 + 89517928 89518043 L1MC1 2226 + 368 483 163657 115 chain 14324 chr14 107349540 + 89540545 89540842 L1PA11 4918 + 4302 4578 143482 29 6 7 55 2 1 13 3 1 66 2 0 14 1 0 20 4 0 9 47 37 13 2 0 11 chain 535210 chr14 107349540 + 89565151 89571625 L1PA7 6471 - 12 6468 3569 7 1 0 244 0 2 5 2 0 6 0 1 7 0 15 493 0 3 55 8 5 43 0 1 580 7 8 409 1 2 326 0 1 233 5 0 82 0 1 31 2 0 181 0 4 196 6 5 8 0 2 6 2 0 514 23 0 98 5 6 5 0 1 190 1 0 42 13 0 119 0 2 1685 13 12 300 3 4 116 2 0 149 26 26 129 1 2 94 chain 118940 chr14 107349540 + 89577808 89579188 LTR12C 1709 + 0 1709 31439 650 0 278 143 0 47 106 0 4 481 chain 27888 chr14 107349540 + 89596937 89597243 AluYb9 318 - 2 308 93404 306 chain 4004 chr14 107349540 + 89599481 89599526 MLT1A0 366 + 321 366 207337 45 chain 19620 chr14 107349540 + 89613946 89614215 MSTA 426 - 1 270 128333 196 15 13 13 0 2 45 chain 4049 chr14 107349540 + 89614222 89614270 MADE1 96 + 46 95 206655 4 0 1 44 chain 3675 chr14 107349540 + 89666327 89666385 MER2B 336 + 278 336 212308 10 3 4 32 1 0 12 chain 11826 chr14 107349540 + 89672292 89672519 MLT1A0 366 + 121 350 152922 43 20 21 18 40 41 106 chain 11325 chr14 107349540 + 89700780 89700950 MSTA 426 + 23 190 154980 27 0 1 41 19 15 83 chain 23544 chr14 107349540 + 89717022 89717353 THE1B 368 + 1 342 112888 33 0 5 130 1 0 31 1 0 14 1 5 11 1 0 10 1 0 66 1 6 30 chain 19155 chr14 107349540 + 89730517 89730883 THE1B 368 - 0 368 129665 55 2 3 57 17 25 14 45 39 40 7 5 13 7 9 33 1 0 75 chain 42366 chr14 107349540 + 89760789 89761338 MER41A 554 + 0 554 66196 180 7 10 9 1 2 54 0 1 298 chain 5943 chr14 107349540 + 89812504 89812590 L1PB2 3958 - 120 205 185750 59 6 5 21 chain 21533 chr14 107349540 + 89865046 89865314 AluSp 311 + 0 268 122032 17 5 4 163 0 1 83 chain 30248 chr14 107349540 + 89903816 89904204 MER41A 554 + 0 526 84064 100 1 139 287 chain 42630 chr14 107349540 + 89905567 89906417 MER41A 554 + 2 553 65864 422 308 9 120 chain 37293 chr14 107349540 + 89906706 89907133 LTR7 482 + 0 470 73089 211 0 10 9 0 31 125 0 2 82 chain 26137 chr14 107349540 + 89908266 89908567 AluSp 311 - 7 309 99451 35 0 1 266 chain 20104 chr14 107349540 + 89929374 89929627 AluY 311 + 22 292 126809 60 4 5 45 0 1 99 0 15 45 chain 16058 chr14 107349540 + 89931340 89931554 THE1C 375 + 117 336 138192 8 3 0 56 8 16 139 chain 17938 chr14 107349540 + 89946512 89946725 AluSc8 310 + 48 263 133011 85 0 2 128 chain 153871 chr14 107349540 + 89971591 89973485 SVA_D 2077 + 6 2077 24107 31 15 8 8 0 8 481 0 40 105 0 40 34 0 40 106 0 136 148 127 0 149 1 0 17 1 50 663 1 0 7 chain 5880 chr14 107349540 + 89972523 89972594 SVA_D 2077 + 1469 1540 173944 71 chain 2971 chr14 107349540 + 89972594 89972646 SVA_D 2077 + 1010 1064 79546 26 0 2 26 chain 18163 chr14 107349540 + 89991170 89991406 MER41-int 2638 + 2394 2633 132430 51 8 9 33 0 2 144 chain 22971 chr14 107349540 + 90002846 90003138 AluSg 306 + 3 297 115746 102 1 0 29 7 7 6 0 3 147 chain 43602 chr14 107349540 + 90007556 90008109 MER41A 554 + 0 554 64682 71 1 0 448 5 7 28 chain 41897 chr14 107349540 + 90008300 90008813 MER41C 542 - 7 542 66759 203 0 21 261 0 1 49 chain 3833 chr14 107349540 + 90031037 90031153 MLT1C 463 + 57 168 209880 22 1 0 5 21 23 17 10 4 10 1 0 13 2 3 14 chain 28330 chr14 107349540 + 90054307 90054723 MSTA 426 + 0 426 91836 25 3 4 111 42 46 181 0 1 24 0 4 30 chain 7904 chr14 107349540 + 90090179 90090273 MLT2B4 540 - 446 540 171621 94 chain 10463 chr14 107349540 + 90116375 90116539 MLT2D 439 + 0 246 158423 89 3 0 5 9 8 24 0 86 34 chain 6412 chr14 107349540 + 90117252 90117330 ERVL-int 1947 + 369 447 181934 78 chain 27595 chr14 107349540 + 90132014 90132379 THE1B 368 + 0 368 94359 15 2 0 25 4 9 29 7 8 86 3 2 194 chain 24220 chr14 107349540 + 90136931 90137214 AluSp 311 + 10 301 109089 63 0 8 220 chain 9699 chr14 107349540 + 90150376 90150497 MER41A 554 + 433 554 162090 121 chain 91200 chr14 107349540 + 90150584 90151847 MER41-int 2638 + 1366 2636 39234 56 7 10 48 0 1 34 1 2 151 1 0 70 11 18 101 2 0 143 1 0 32 0 1 11 5 7 41 1 0 83 0 1 4 5 4 12 10 3 19 0 1 235 0 1 71 0 1 30 0 1 78 chain 17621 chr14 107349540 + 90151857 90152077 MER41A 554 + 1 226 133933 19 0 1 46 0 1 51 0 3 104 chain 24366 chr14 107349540 + 90163965 90164308 THE1B 368 + 0 356 108287 54 16 29 89 1 0 26 1 0 104 0 1 24 1 2 27 chain 23547 chr14 107349540 + 90170136 90170489 THE1C 375 - 0 367 112871 26 0 9 21 1 6 100 34 34 171 chain 18746 chr14 107349540 + 90177283 90177645 THE1B 368 - 0 368 130833 18 3 0 5 4 7 96 62 65 27 0 1 12 18 17 6 0 3 111 chain 22172 chr14 107349540 + 90178854 90179094 7SK 245 + 0 240 119481 240 chain 13728 chr14 107349540 + 90182786 90183000 MLT2D 439 + 112 327 145511 87 2 0 40 2 0 20 5 11 14 8 7 36 chain 27171 chr14 107349540 + 90205152 90205448 AluYf4 310 - 11 310 95691 38 0 3 258 chain 118353 chr14 107349540 + 90221494 90223040 THE1C-int 1605 - 26 1590 31666 268 27 30 217 0 1 4 1 0 100 0 1 151 0 2 52 6 0 60 8 7 41 12 16 65 0 1 111 0 7 96 2 3 13 0 6 312 chain 47116 chr14 107349540 + 90223072 90223761 L1PA16 3655 + 2915 3592 61112 73 1 2 214 1 0 31 4 0 56 2 0 49 0 1 41 2 0 33 0 1 57 12 13 56 21 17 18 3 0 15 chain 38055 chr14 107349540 + 90245677 90246085 L1PA5 6144 + 5724 6132 72052 408 chain 41533 chr14 107349540 + 90253264 90253803 MLT2A2 560 + 0 560 67241 137 3 4 84 2 1 40 4 0 30 3 28 236 chain 3347 chr14 107349540 + 90274461 90274496 MLT1J2 417 + 52 87 218105 35 chain 18638 chr14 107349540 + 90298930 90299176 MER47A 366 - 42 291 131113 82 1 2 85 0 2 78 chain 3893 chr14 107349540 + 90319442 90319538 Tigger13a 716 - 463 519 208990 15 2 0 26 38 0 15 chain 95986 chr14 107349540 + 90339756 90341370 THE1B-int 1605 - 6 1319 37825 553 1 7 275 0 9 140 15 15 150 44 27 19 299 0 90 9 3 6 0 6 13 chain 8063 chr14 107349540 + 90351184 90351410 MLT1A 405 + 137 381 170678 25 60 78 41 41 42 11 1 0 47 chain 14199 chr14 107349540 + 90360606 90360832 L1PA8 5853 - 0 214 143882 92 2 1 19 2 1 35 7 5 8 6 0 13 6 4 36 chain 78108 chr14 107349540 + 90370322 90371255 L1PA6 6164 - 2 937 44461 6 5 0 22 0 1 237 0 2 577 1 5 85 chain 16697 chr14 107349540 + 90408221 90408583 THE1D 372 + 0 372 136414 22 5 0 32 105 129 9 0 2 89 16 0 28 0 5 56 chain 28523 chr14 107349540 + 90414536 90415035 L1MA2 4263 + 3617 4103 91088 37 2 0 7 2 1 12 0 3 13 1 2 14 1 3 82 24 20 121 9 11 11 18 11 91 18 11 36 chain 27350 chr14 107349540 + 90424833 90425179 LTR28 1034 - 692 1034 95113 232 5 1 109 chain 28651 chr14 107349540 + 90436216 90436519 AluYa5 310 - 7 310 90517 303 chain 52089 chr14 107349540 + 90478952 90479614 THE1B-int 1605 + 945 1605 57571 224 1 0 39 22 21 376 chain 3721 chr14 107349540 + 90482194 90482246 MLT1A0 366 - 304 357 211630 31 2 3 19 chain 68172 chr14 107349540 + 90492806 90493568 L1PA5 6144 - 0 763 49172 142 0 1 620 chain 22769 chr14 107349540 + 90497454 90497700 L1PA3long 6157 - 0 246 116733 246 chain 118115 chr14 107349540 + 90555398 90556968 THE1B-int 1605 + 0 1599 31766 276 1 2 121 8 5 27 0 25 19 5 6 193 0 2 237 1 2 34 1 0 48 0 5 38 25 12 86 0 6 9 0 1 225 1 5 215 chain 19614 chr14 107349540 + 90565140 90565396 AluSg7 307 + 0 258 128357 43 2 1 87 0 1 101 6 8 17 chain 59674 chr14 107349540 + 90585118 90585871 L1PREC2 3366 + 1204 1958 53005 35 7 6 65 1 0 288 1 0 262 0 1 72 0 3 22 chain 18467 chr14 107349540 + 90587081 90587316 THE1C-int 1605 - 0 236 131592 58 1 0 4 0 1 148 1 2 23 chain 6410 chr14 107349540 + 90609693 90609792 MER34A1 583 - 484 583 181947 62 7 8 6 1 0 23 chain 10456 chr14 107349540 + 90617379 90617562 MSTA 426 + 235 426 158461 20 8 12 45 6 9 13 14 15 77 chain 6533 chr14 107349540 + 90618902 90618979 THE1B 368 + 230 306 180981 12 1 0 64 chain 43415 chr14 107349540 + 90636857 90637422 PRIMA4_LTR 623 - 30 623 64917 106 0 1 56 1 0 36 4 6 119 11 13 55 0 23 42 0 1 135 chain 34270 chr14 107349540 + 90637804 90638239 MER4A1 472 - 17 472 77254 163 0 20 19 1 2 106 1 0 145 chain 10467 chr14 107349540 + 90640685 90640843 THE1C 375 - 210 375 158405 112 13 22 16 2 0 15 chain 8431 chr14 107349540 + 90643565 90643672 HY1 111 + 0 111 168682 45 0 4 62 chain 2525 chr14 107349540 + 90644933 90644978 L1MA3 4352 + 4268 4311 232825 14 2 1 5 1 0 23 chain 7805 chr14 107349540 + 90662086 90662306 MER2B 336 + 85 314 172279 18 26 29 78 75 81 23 chain 9726 chr14 107349540 + 90665566 90665681 MER50 708 + 570 685 161956 115 chain 18361 chr14 107349540 + 90668050 90668740 MER83B 357 + 0 350 131907 14 3 0 47 1 2 32 3 2 12 57 67 61 360 13 100 chain 548691 chr14 107349540 + 90673121 90679148 L1PA3long 6157 - 1 6156 1617 2979 1 0 2273 0 128 623 0 1 151 chain 418713 chr14 107349540 + 90693968 90699831 HERVL-int 5654 + 435 5654 9566 25 0 1 6 0 4 264 0 4 64 8 3 69 4 0 146 0 1 96 3 0 463 0 8 207 1 0 186 0 1 257 323 19 17 54 2 221 0 1 41 1 2 177 7 4 575 0 1 188 10 4 246 5 0 43 0 1 154 0 1 82 0 39 315 11 1 92 0 1 614 0 1 143 23 7 188 307 7 227 chain 59950 chr14 107349540 + 90704939 90705686 MER4E 760 + 0 753 52845 185 1 0 54 1 0 21 1 2 127 0 2 11 0 4 16 0 1 330 chain 9254 chr14 107349540 + 90710128 90710253 L1PA8 5853 - 23 146 164291 70 1 0 19 2 1 33 chain 145922 chr14 107349540 + 90711761 90713354 L1PA4 6152 - 5 1598 25185 1593 chain 63764 chr14 107349540 + 90727904 90728643 L1PA5 6144 + 5399 6135 51115 61 8 1 283 0 3 254 0 1 133 chain 20886 chr14 107349540 + 90728874 90729143 AluSc8 310 + 28 297 124335 103 1 4 136 4 1 25 chain 3433 chr14 107349540 + 90759893 90759938 MER3 215 + 125 191 216519 22 0 21 23 chain 10642 chr14 107349540 + 90778021 90778178 MER30 238 - 5 231 157641 106 4 0 7 1 22 29 0 52 10 chain 8981 chr14 107349540 + 90813744 90813852 MER4A1 472 - 12 122 165708 60 0 2 48 chain 23875 chr14 107349540 + 90838073 90838417 THE1C 375 - 11 361 111059 14 1 0 204 0 4 41 41 44 43 chain 40837 chr14 107349540 + 90890721 90891272 MER41A 554 - 0 554 68121 23 2 9 159 8 7 142 4 1 213 chain 4138 chr14 107349540 + 90914221 90914282 MLT1H-int 1039 + 890 950 205394 43 2 1 16 chain 29085 chr14 107349540 + 90931815 90932189 THE1C 375 - 0 374 88614 25 1 0 211 0 4 12 3 0 122 chain 216063 chr14 107349540 + 90934546 90937735 L1PA11 4918 - 289 3130 18110 18 19 13 5 1 0 11 11 4 11 2 0 13 1 0 15 48 35 14 4 3 15 2 0 28 0 1 35 3 1 12 1 0 67 5 0 18 0 2 196 3 7 72 4 0 303 3 0 189 10 12 330 0 1 281 0 1 106 2 1 264 2 0 279 4 1 20 1 5 168 310 0 258 0 1 25 chain 178631 chr14 107349540 + 90940555 90943070 MER41-int 2638 + 118 2636 21112 52 28 14 22 0 2 5 4 1 14 3 1 19 1 0 5 7 4 34 4 0 15 1 3 48 0 1 49 0 1 51 1 0 181 0 1 7 1 0 30 1 0 57 1 2 40 13 14 18 2 16 204 2 1 65 0 3 34 1 0 96 4 6 36 0 1 56 1 0 34 0 2 305 1 0 187 9 0 21 2 0 46 0 3 108 6 5 23 0 3 28 5 3 79 0 1 51 0 2 194 0 3 16 5 13 182 chain 13887 chr14 107349540 + 90944736 90944912 MER50 708 - 9 179 144960 12 9 3 155 chain 28551 chr14 107349540 + 90992890 90993263 THE1C 375 + 0 374 90952 135 0 4 36 1 2 9 4 1 163 1 0 24 chain 5759 chr14 107349540 + 90997193 90997300 L1PB1 5432 + 5325 5430 187559 7 1 0 14 2 0 24 1 0 21 1 0 11 3 8 10 2 0 10 chain 14361 chr14 107349540 + 91098058 91098269 L1MB3 1562 - 558 775 143335 31 1 0 35 7 15 7 1 0 129 chain 8477 chr14 107349540 + 91158117 91158424 L1MB5 1630 - 54 355 168416 20 8 7 44 147 144 28 13 11 47 chain 46786 chr14 107349540 + 91174514 91175156 Tigger1 2417 + 871 1558 61383 165 0 3 51 5 6 180 20 23 149 8 45 51 0 1 13 chain 80321 chr14 107349540 + 91175156 91176025 L1PA4 6152 + 5267 6136 43465 869 chain 7724 chr14 107349540 + 91233579 91233689 L1M4c 1769 + 499 617 172748 14 1 0 63 0 10 22 1 0 9 chain 18540 chr14 107349540 + 91259277 91259585 THE1D 372 + 0 314 131392 97 6 8 18 10 14 31 18 24 10 7 1 111 chain 22101 chr14 107349540 + 91268118 91268427 AluSq2 311 + 1 299 119778 47 10 5 80 0 1 6 7 4 7 0 3 121 1 0 10 6 0 14 chain 88845 chr14 107349540 + 91289453 91290561 MER11A 1151 + 0 1151 40062 79 0 8 143 1 0 64 9 20 338 5 0 97 1 0 110 12 44 182 1 0 66 chain 7488 chr14 107349540 + 91300507 91300670 L1MB8 1703 - 650 808 174218 73 22 32 25 22 8 4 1 0 16 chain 25173 chr14 107349540 + 91307278 91307579 AluSg7 307 - 8 307 103896 167 2 0 132 chain 23832 chr14 107349540 + 91322704 91322995 AluSp 311 - 9 300 111300 174 1 0 7 0 1 109 chain 24728 chr14 107349540 + 91326159 91326465 L1PA7 6471 + 6164 6470 106282 192 4 5 88 1 0 21 chain 51551 chr14 107349540 + 91341836 91342393 L1PA4 6152 + 5581 6138 57925 557 chain 16052 chr14 107349540 + 91351930 91352115 AluYc 301 + 116 301 138208 185 chain 123231 chr14 107349540 + 91404245 91405797 THE1B-int 1605 - 0 1605 29968 13 0 14 963 0 1 14 1 0 136 7 32 387 0 12 16 3 5 12 chain 23622 chr14 107349540 + 91405797 91406158 THE1B 368 - 0 368 112458 90 8 7 59 1 4 5 3 0 11 4 0 4 1 0 16 1 0 77 8 7 29 0 15 44 chain 5059 chr14 107349540 + 91407449 91407513 Charlie4a 502 - 24 88 194551 64 chain 33392 chr14 107349540 + 91417845 91418368 HERVK11-int 2540 + 1818 2303 78585 17 1 0 83 1 3 103 1 0 80 1 6 124 90 47 22 chain 87254 chr14 107349540 + 91419444 91420558 MER11A 1151 + 0 1148 40671 108 0 2 72 12 0 39 7 12 61 5 1 31 0 2 345 6 9 137 6 40 107 0 4 178 chain 33030 chr14 107349540 + 91500716 91501168 LTR12 884 + 0 861 79169 25 1 0 13 0 18 152 1 134 26 0 22 191 5 242 38 chain 23462 chr14 107349540 + 91518892 91519198 AluY 311 + 6 304 113303 127 8 0 60 1 0 67 1 2 42 chain 49614 chr14 107349540 + 91553674 91554252 LTR10C 591 + 0 580 59306 325 0 1 4 1 0 180 0 2 68 chain 3357 chr14 107349540 + 91582971 91583007 MER41B 635 - 88 124 217935 36 chain 36532 chr14 107349540 + 91585976 91586503 MLT2A2 560 + 0 560 74196 8 1 0 50 0 10 19 1 0 82 12 11 115 0 1 40 1 0 4 0 1 58 5 16 86 8 23 13 1 0 23 chain 50046 chr14 107349540 + 91591055 91591646 LTR10C 591 + 1 591 58986 154 1 0 302 6 8 5 2 0 121 chain 17540 chr14 107349540 + 91597813 91598012 L1PA5 6144 - 1 201 134156 130 0 1 69 chain 23774 chr14 107349540 + 91603035 91603325 AluSp 311 + 5 294 111630 112 1 0 177 chain 4768 chr14 107349540 + 91603616 91603723 MER39 703 - 288 394 197718 30 38 37 39 chain 26124 chr14 107349540 + 91615315 91615620 AluSp 311 + 6 311 99508 305 chain 12900 chr14 107349540 + 91617164 91617552 L1MB3 1562 - 7 355 148625 28 4 3 39 0 6 6 14 7 24 117 79 12 1 0 8 40 41 95 chain 34519 chr14 107349540 + 91620549 91621004 MER4A 717 - 125 717 76880 44 0 2 11 0 97 151 3 0 24 4 0 101 1 40 6 0 1 39 0 5 71 chain 5462 chr14 107349540 + 91621735 91621814 MER21B 843 + 0 80 190394 31 5 6 43 chain 37781 chr14 107349540 + 91667086 91667642 LTR7B 505 - 0 505 72441 25 5 4 191 1 0 33 4 25 32 71 0 90 0 1 104 chain 28262 chr14 107349540 + 91692008 91692325 LTR17 781 - 455 781 92068 198 0 9 119 chain 50712 chr14 107349540 + 91692639 91693212 HERV17-int 4347 - 0 584 58495 255 0 3 309 0 8 9 chain 3703 chr14 107349540 + 91696896 91696970 MLT1J2 417 + 62 135 211900 32 19 18 23 chain 23910 chr14 107349540 + 91703885 91704177 AluSp 311 - 17 311 110864 12 0 1 115 0 1 165 chain 86647 chr14 107349540 + 91706090 91707166 MER11B 1079 - 15 1079 40906 9 11 0 24 0 1 153 0 1 103 2 4 28 10 0 364 0 1 146 0 5 59 2 1 165 chain 20723 chr14 107349540 + 91732745 91732997 AluSg7 307 + 33 287 124884 90 3 4 135 0 1 24 chain 28864 chr14 107349540 + 91742159 91742463 AluYg6 310 - 6 310 89609 304 chain 50171 chr14 107349540 + 91813809 91814362 L1PA3long 6157 + 5278 5831 58889 553 chain 4120 chr14 107349540 + 91857681 91857736 L1MB3 1562 - 18 72 205646 21 1 0 33 chain 29814 chr14 107349540 + 91892328 91892811 THE1B-int 1605 + 0 429 85398 12 19 20 80 54 0 157 4 6 7 2 0 78 2 1 68 chain 558132 chr14 107349540 + 91897211 91903237 L1PA2 6032 - 0 6031 489 14 1 6 6011 chain 253429 chr14 107349540 + 91908826 91914443 L1MA3 4352 + 51 4282 16060 37 1 2 66 1 0 19 5 0 50 1 0 73 9 7 4 1 0 4 0 1 42 5 6 45 14 13 79 39 0 48 5 7 136 1 3 80 2 0 12 1 6 72 415 0 12 1 0 9 0 3 43 6 8 142 2 1 29 7 6 28 0 6 152 1 0 18 0 4 44 0 4 156 1 0 26 3 0 15 18 20 64 19 23 93 54 11 64 13 15 221 27 28 205 1 0 56 0 4 207 4 3 112 0 3 27 1 0 16 7 8 98 0 1 130 6 8 139 2 5 6 3 0 12 4 6 32 0 5 77 0 4 109 2 0 93 300 6 32 1 2 179 1062 434 27 22 20 5 1 0 75 5 4 24 chain 6244 chr14 107349540 + 91915305 91915384 MLT1B 390 - 285 364 183220 79 chain 7192 chr14 107349540 + 91996858 91997524 LTR16B2 458 - 33 411 176131 48 441 149 22 70 73 14 26 27 45 chain 12186 chr14 107349540 + 92003161 92003358 MER6A 605 - 3 200 151471 51 27 28 88 1 0 30 chain 19612 chr14 107349540 + 92006994 92007374 MSTA 426 - 43 426 128360 141 89 128 8 36 0 106 chain 300272 chr14 107349540 + 92021675 92027937 L1PA10 4194 + 175 4150 13408 12 11 0 11 3 0 18 11 7 10 2 0 8 1 0 9 1 0 21 2 0 15 1 0 8 49 23 18 2 0 21 1 0 7 1 0 32 10 0 8 1 0 80 3 1 396 4 2 232 0 1 42 0 23 103 1947 0 171 3 2 695 1 0 459 0 1 4 1 0 61 3 7 100 17 9 232 0 4 100 2 1 229 0 1 100 0 1 201 2 10 32 306 0 8 0 8 397 3 0 34 chain 158825 chr14 107349540 + 92022875 92024752 SVA_D 2077 - 0 2071 23483 5 3 0 662 50 22 4 1 0 83 0 77 129 0 1 9 0 51 80 1 38 192 0 76 620 25 9 13 chain 4231 chr14 107349540 + 92023545 92023595 SVA_D 2077 - 892 942 84398 50 chain 54119 chr14 107349540 + 92029957 92031323 L1P1 4361 - 33 763 56282 18 1 0 4 2 1 20 5 7 15 322 0 115 1 0 212 0 1 49 0 2 189 330 12 13 0 2 70 chain 47240 chr14 107349540 + 92033593 92034549 LTR12 884 - 15 884 61009 85 314 0 60 0 103 162 6 0 84 2 0 29 5 138 184 1 0 24 chain 5932 chr14 107349540 + 92043251 92043323 MER51C 639 - 101 173 185870 72 chain 16670 chr14 107349540 + 92044849 92045084 LTR12C 1709 + 874 1109 136487 194 2 17 7 15 0 17 chain 89390 chr14 107349540 + 92059066 92060142 THE1A-int 1579 + 480 1574 39847 57 0 2 341 0 3 338 0 13 340 chain 6671 chr14 107349540 + 92060147 92060371 THE1A 353 + 0 220 102252 106 8 4 110 chain 40158 chr14 107349540 + 92060385 92060831 L1PA4 6152 + 5705 6151 69099 446 chain 4765 chr14 107349540 + 92060843 92061003 THE1A 353 + 220 353 102252 79 17 0 5 10 0 49 chain 172853 chr14 107349540 + 92061003 92064305 MER4-int 2692 - 103 2618 21726 14 0 10 53 1 0 19 13 11 20 4 3 162 6 5 4 0 1 15 1 0 85 2 0 47 1 2 86 20 22 69 185 0 70 1 0 127 0 1 8 1 3 244 6 1 120 0 9 8 9 0 44 2 0 11 11 14 28 1 0 51 330 13 9 0 3 43 2 1 48 1 0 83 12 17 73 1 0 33 0 1 42 312 0 90 0 4 45 2 3 19 2 4 94 0 1 34 0 9 425 10 14 15 3 0 25 chain 4818 chr14 107349540 + 92065566 92065622 MER4A1 472 - 0 56 197146 56 chain 45759 chr14 107349540 + 92084246 92084784 MER41A 554 - 0 554 62265 145 0 16 393 chain 5281 chr14 107349540 + 92092506 92092574 L1MC1 2226 + 1101 1168 192193 32 1 0 35 chain 20992 chr14 107349540 + 92094783 92095119 THE1D 372 + 0 360 123947 162 55 62 14 12 29 93 chain 555457 chr14 107349540 + 92106593 92112577 L1PA2 6032 - 0 6031 774 14 0 6 649 0 9 528 0 28 840 0 1 2920 0 3 1033 chain 20696 chr14 107349540 + 92119791 92120138 THE1A 353 - 12 351 124983 16 34 0 8 0 26 33 4 3 54 1 0 81 12 11 41 0 3 63 chain 23156 chr14 107349540 + 92129748 92130011 AluY 311 + 41 305 114864 91 0 1 172 chain 6220 chr14 107349540 + 92132319 92132397 THE1D 372 + 83 166 183404 24 0 1 27 0 4 27 chain 108202 chr14 107349540 + 92132432 92133660 HERV9-int 5642 + 3590 4824 34645 590 0 5 537 0 1 101 chain 63019 chr14 107349540 + 92134519 92135317 LTR12 884 + 0 884 51435 24 1 0 41 8 44 19 4 29 90 0 25 68 1 2 35 2 0 161 0 2 344 chain 22795 chr14 107349540 + 92138102 92138362 AluYc3 301 + 9 270 116604 104 1 2 155 chain 112870 chr14 107349540 + 92143077 92144586 L1PA8 5853 + 4355 5853 33409 559 0 1 26 15 25 40 0 4 83 8 7 174 0 1 115 29 11 79 0 1 83 1 0 34 3 0 11 2 0 70 1 0 5 8 7 49 2 1 112 chain 27240 chr14 107349540 + 92165260 92165697 L1PB3 3668 - 55 463 95461 14 7 4 13 1 0 13 10 6 34 3 1 27 2 0 19 20 4 87 2 1 39 0 1 60 1 0 85 chain 28507 chr14 107349540 + 92166286 92166631 L1PA7 6471 - 8 354 91161 161 0 1 141 0 1 28 1 0 14 chain 25406 chr14 107349540 + 92215445 92215729 L1P1 4361 + 3092 3376 102653 284 chain 25667 chr14 107349540 + 92226030 92226441 MSTA 426 + 0 426 101414 102 0 2 104 3 1 13 67 81 76 1 2 45 chain 33619 chr14 107349540 + 92237607 92238138 L1PA15 4387 + 3847 4356 78213 44 3 1 41 1 0 171 2 1 25 1 0 54 2 1 22 6 1 8 2 1 39 17 14 42 2 0 10 12 7 27 chain 6874 chr14 107349540 + 92270232 92270311 5S 121 - 36 115 178401 79 chain 122367 chr14 107349540 + 92272624 92274168 THE1B-int 1605 + 17 1600 30261 415 2 33 15 0 1 5 1 0 118 0 1 25 6 9 5 3 0 125 0 1 68 4 6 25 2 0 154 0 2 401 0 4 170 chain 30602 chr14 107349540 + 92316814 92317565 MER1A 529 + 85 529 83197 169 310 0 30 0 3 5 9 6 158 9 10 29 11 13 21 chain 24100 chr14 107349540 + 92330384 92330717 LTR39 781 - 452 781 109741 206 1 2 75 19 12 11 0 2 21 chain 9882 chr14 107349540 + 92390410 92390535 MER85 139 + 4 139 161166 86 0 10 39 chain 22885 chr14 107349540 + 92418289 92418541 AluYf4 310 - 9 262 116166 94 0 1 158 chain 13254 chr14 107349540 + 92426528 92426707 MER30 238 + 38 238 147268 59 0 3 8 4 16 37 0 6 71 chain 8265 chr14 107349540 + 92435013 92435138 L1MD2 1676 + 1346 1474 169592 92 7 11 4 1 0 21 chain 14191 chr14 107349540 + 92452627 92452856 Tigger4a 237 - 0 237 143916 62 0 2 25 11 9 68 6 6 28 9 17 20 chain 5195 chr14 107349540 + 92457697 92457764 MSTD 398 + 331 398 193083 67 chain 25239 chr14 107349540 + 92473375 92473666 AluSg7 307 - 13 306 103542 23 0 2 268 chain 24056 chr14 107349540 + 92476594 92476888 AluSp 311 + 2 294 110012 281 2 0 11 chain 38209 chr14 107349540 + 92500005 92500847 LTR19B 566 - 35 566 71826 17 0 1 183 11 15 30 0 1 138 12 9 78 311 0 38 7 4 17 chain 5592 chr14 107349540 + 92501786 92501893 MER30 238 - 1 140 189157 33 5 8 38 16 45 15 chain 15701 chr14 107349540 + 92512604 92512785 HERVH-int 3825 - 0 181 139266 181 chain 5902 chr14 107349540 + 92516096 92516165 LTR7 482 - 5 74 186163 69 chain 23992 chr14 107349540 + 92518557 92518850 AluSp 311 + 1 299 110372 147 0 6 75 8 7 63 chain 43156 chr14 107349540 + 92520577 92521092 MER41A 554 + 22 554 65222 468 0 17 47 chain 7586 chr14 107349540 + 92521751 92521974 L1MB3 1562 - 38 179 173628 60 1 0 21 47 22 29 56 0 9 chain 11128 chr14 107349540 + 92522965 92523115 MER41-int 2638 + 2473 2636 155705 9 0 6 23 0 1 12 5 9 38 0 2 63 chain 27904 chr14 107349540 + 92523124 92523489 MER41A 554 + 0 372 93354 189 1 0 4 18 26 153 chain 38853 chr14 107349540 + 92550044 92550581 MLT2A2 560 + 0 560 70942 16 1 5 172 19 15 11 0 8 172 3 14 137 0 4 6 chain 19215 chr14 107349540 + 92581497 92581766 AluY 311 + 11 294 129485 41 1 5 75 10 11 82 6 15 54 chain 31307 chr14 107349540 + 92602670 92603108 LTR3B 427 + 0 427 81978 149 14 13 134 14 11 25 11 5 11 1 0 79 chain 8557 chr14 107349540 + 92607574 92607677 MER2 342 + 139 242 167978 103 chain 14430 chr14 107349540 + 92632995 92633317 L1MB7 1623 - 894 1225 143112 95 86 87 16 0 6 15 0 1 38 3 2 12 19 21 38 chain 21366 chr14 107349540 + 92646457 92646816 THE1D 372 + 0 372 122630 15 0 2 32 24 29 88 25 27 28 3 0 14 1 7 110 0 1 19 chain 23588 chr14 107349540 + 92650732 92651015 AluSp 311 - 27 310 112642 283 chain 76131 chr14 107349540 + 92653390 92654300 SVA_A 1864 - 0 1421 45405 622 1 479 39 4 1 110 1 37 76 2 0 37 0 2 18 chain 24043 chr14 107349540 + 92656262 92656677 MSTA 426 - 0 426 110094 107 11 19 51 15 13 18 4 2 60 9 13 8 2 0 5 1 0 4 24 30 96 chain 2880 chr14 107349540 + 92657920 92658052 MIR 256 - 20 153 227358 28 85 86 19 chain 48245 chr14 107349540 + 92662012 92663095 L1PB1 5432 - 5 742 60278 5 2 0 18 1 0 11 0 3 13 18 17 14 2 0 14 1 0 5 2 0 19 24 12 15 1 0 45 1 0 15 2 1 11 0 1 40 2 0 9 6 2 13 6 4 26 3 0 14 9 6 277 313 0 4 0 1 122 chain 22679 chr14 107349540 + 92667598 92667961 THE1B 368 + 0 368 117171 113 3 4 52 31 24 7 1 0 10 0 4 10 11 19 63 1 0 4 1 2 56 chain 32944 chr14 107349540 + 92684980 92685685 L1MA2 4263 + 3652 4218 79300 10 1 0 134 13 10 148 2 1 11 2 1 85 11 4 50 1 0 8 194 71 19 4 2 12 chain 10327 chr14 107349540 + 92693304 92693463 L1MB3 1562 - 147 295 159003 32 13 3 29 1 0 84 chain 533785 chr14 107349540 + 92693777 92699912 L1PA5 6144 - 0 6144 3731 84 1 0 1187 2 1 1370 0 1 287 0 4 52 2 0 524 6 5 295 0 4 794 0 1 364 9 0 858 2 1 178 0 14 120 chain 13303 chr14 107349540 + 92735874 92736177 L1PB1 5432 - 10 318 147071 21 1 0 9 42 68 11 8 0 17 2 0 17 1 0 58 2 1 52 2 0 9 5 1 14 8 6 24 chain 12209 chr14 107349540 + 92762657 92763019 MLT1C 463 + 69 430 151383 55 6 0 18 27 32 14 39 38 15 8 36 6 27 0 24 44 44 79 chain 8855 chr14 107349540 + 92820963 92821071 MER5A1 166 - 16 123 166351 26 1 0 81 chain 44196 chr14 107349540 + 92847378 92847950 L1PA8 5853 + 5297 5853 63951 267 1 0 44 2 0 65 7 6 61 2 1 19 1 0 68 10 0 25 chain 23083 chr14 107349540 + 92851568 92851854 AluSc5 308 + 0 293 115223 144 0 8 126 2 1 14 chain 9128 chr14 107349540 + 92902423 92902620 THE1D 372 - 61 263 164923 33 7 1 38 56 61 6 0 6 57 chain 36326 chr14 107349540 + 92938600 92939249 L1PB1 5432 - 2 573 74467 6 7 0 6 1 0 14 1 0 13 2 1 20 1 0 24 2 0 6 22 19 13 2 3 5 11 0 4 1 0 15 1 0 45 1 0 15 2 1 52 2 0 9 2 0 3 2 0 9 1 0 13 1 0 20 1 0 8 42 3 244 chain 28418 chr14 107349540 + 92946630 92946936 AluYb8 318 - 12 318 91510 306 chain 7822 chr14 107349540 + 92957681 92957803 MLT1B 390 - 236 363 172179 19 0 4 22 12 13 69 chain 37758 chr14 107349540 + 92999617 93000201 L1PB1 5432 + 4877 5422 72478 226 7 0 11 1 0 24 1 0 8 1 0 11 6 2 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 1 0 11 9 0 14 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 41924 chr14 107349540 + 93041652 93042279 MER41B 635 - 1 626 66726 107 1 0 4 0 1 20 49 46 108 0 3 218 1 2 30 1 0 26 3 2 39 6 5 14 chain 4046 chr14 107349540 + 93047163 93047213 MLT1J1 437 - 310 360 206718 50 chain 22386 chr14 107349540 + 93048162 93048514 MER31A 484 - 120 480 118559 35 2 3 63 1 2 4 1 0 45 0 1 75 29 30 29 4 9 64 chain 16748 chr14 107349540 + 93059844 93060037 L1PA5 6144 + 5942 6135 136262 193 chain 3822 chr14 107349540 + 93076531 93076579 L1MB3 1562 + 1508 1555 210050 15 1 0 32 chain 3286 chr14 107349540 + 93081485 93081526 THE1B 368 + 327 368 219260 41 chain 24909 chr14 107349540 + 93085381 93085717 MER61-int 3695 - 2577 2966 105288 163 0 1 4 0 1 5 4 3 74 0 49 40 0 3 46 chain 29875 chr14 107349540 + 93087648 93088103 MER4E1 777 - 0 445 85187 8 0 2 175 9 1 35 28 20 53 2 0 37 0 8 12 4 3 67 6 5 19 chain 21158 chr14 107349540 + 93095622 93095973 MER51B 395 - 8 395 123347 78 3 15 37 30 29 9 0 3 6 3 0 104 0 6 33 8 27 40 chain 5101 chr14 107349540 + 93139771 93139851 MER96B 391 + 79 155 194078 37 2 0 16 2 0 23 chain 9374 chr14 107349540 + 93146857 93146963 MLT1A0 366 - 223 329 163694 106 chain 3497 chr14 107349540 + 93196936 93196982 MER33 330 + 145 193 215393 6 0 2 40 chain 6016 chr14 107349540 + 93216488 93216575 LTR12 884 + 162 365 185080 22 2 27 42 0 91 21 chain 3477 chr14 107349540 + 93232648 93232773 LTR16A1 462 - 71 193 215707 16 74 71 35 chain 7249 chr14 107349540 + 93240402 93240536 L1MB8 1703 + 1450 1585 175767 63 0 1 7 13 14 24 6 5 21 chain 49325 chr14 107349540 + 93251896 93252637 LTR25 836 - 0 836 59500 24 34 37 206 1 3 18 1 0 7 6 101 63 1 0 86 8 9 203 21 17 62 chain 29128 chr14 107349540 + 93263033 93263343 AluYb8 318 + 0 310 88420 310 chain 86675 chr14 107349540 + 93286324 93287323 LTR5B 1012 - 0 1012 40895 523 1 0 352 0 14 123 chain 20628 chr14 107349540 + 93300549 93300800 L1PA3long 6157 - 0 248 125198 140 10 0 7 2 9 92 chain 545866 chr14 107349540 + 93319172 93325320 L1PA4 6152 + 3 6152 1964 96 0 1 838 0 19 279 1 0 236 0 1 56 1 2 162 0 1 1584 23 0 660 0 1 964 0 1 1248 chain 6862 chr14 107349540 + 93325710 93325928 L1MC4 1079 - 836 1046 178481 37 111 106 32 3 0 35 chain 5712 chr14 107349540 + 93337581 93337653 L1MB2 1706 + 1620 1692 187995 72 chain 21362 chr14 107349540 + 93366398 93366760 THE1B 368 - 0 368 122647 56 7 6 64 6 14 14 39 37 60 9 10 107 chain 4563 chr14 107349540 + 93367123 93367176 MLT1I 406 - 249 302 200072 53 chain 3402 chr14 107349540 + 93368805 93368844 LTR16E1 515 - 22 61 217052 39 chain 162786 chr14 107349540 + 93377079 93379015 SVA_F 1814 - 26 1805 22967 639 127 0 58 50 0 125 3 18 17 0 1 43 0 1 226 0 1 564 0 2 84 chain 7349 chr14 107349540 + 93377729 93377845 SVA_F 1814 - 725 792 131679 52 49 0 15 chain 1254 chr14 107349540 + 93377781 93377811 SVA_F 1814 - 524 553 152201 16 1 0 13 chain 3168 chr14 107349540 + 93377903 93377953 SVA_F 1814 - 850 1043 131679 1 2 65 17 0 1 25 0 79 5 chain 5046 chr14 107349540 + 93392143 93392207 MIRc 230 - 101 165 194666 64 chain 3585 chr14 107349540 + 93394144 93394184 MIR3 191 - 80 120 213891 40 chain 4071 chr14 107349540 + 93398186 93398230 MIRb 242 - 131 175 206300 44 chain 2847 chr14 107349540 + 93401777 93401807 MIRb 242 + 99 129 227884 30 chain 4651 chr14 107349540 + 93431965 93432021 L1MB7 1623 + 0 56 199051 56 chain 12870 chr14 107349540 + 93445805 93446147 MSTA 426 + 0 392 148751 56 14 15 26 117 152 44 13 33 38 6 0 28 chain 24015 chr14 107349540 + 93462640 93462933 L1PA5 6144 + 5846 6144 110243 155 0 1 126 1 5 11 chain 17484 chr14 107349540 + 93519270 93519474 L1PA4 6152 + 5946 6143 134302 59 7 0 138 chain 3599 chr14 107349540 + 93527167 93527210 MIRb 242 + 100 143 213651 43 chain 18700 chr14 107349540 + 93569491 93569774 AluSg 306 + 0 290 130945 47 17 25 155 6 11 21 18 12 19 chain 19248 chr14 107349540 + 93584384 93584605 AluSp 311 + 39 260 129380 221 chain 3683 chr14 107349540 + 93613439 93613482 MER63A 208 - 94 137 212189 43 chain 21746 chr14 107349540 + 93614861 93615114 AluSp 311 + 2 255 121220 253 chain 34119 chr14 107349540 + 93631472 93631933 LTR2B 499 + 9 494 77451 5 1 0 10 0 10 40 3 0 27 5 11 16 5 17 163 0 1 8 1 0 177 chain 107162 chr14 107349540 + 93635661 93636993 LTR12C 1709 - 9 1709 34925 160 2 1 21 1 2 168 0 8 112 0 4 31 0 207 149 1 0 17 0 119 124 3 0 282 1 35 260 chain 11937 chr14 107349540 + 93698087 93698305 MER1B 344 + 102 335 152454 19 8 11 5 3 0 18 0 4 64 30 43 10 2 0 59 chain 35526 chr14 107349540 + 93699541 93699956 L1PA7 6471 + 6054 6470 75510 82 0 1 333 chain 16821 chr14 107349540 + 93781867 93782242 L1MB8 1703 - 83 405 136059 23 52 9 15 8 17 37 1 0 31 1 0 48 24 18 33 5 0 15 10 2 63 0 2 9 chain 3422 chr14 107349540 + 93796950 93796989 MADE1 96 + 57 96 216727 39 chain 11287 chr14 107349540 + 93803166 93803306 MSTB 430 + 0 141 155094 135 0 1 5 chain 24967 chr14 107349540 + 93815267 93815584 LTR12D 1347 + 831 1347 104975 89 0 200 29 4 5 104 2 0 89 chain 11116 chr14 107349540 + 93820651 93820846 Tigger4a 237 + 14 212 155754 46 10 11 51 6 7 34 12 13 36 chain 244674 chr14 107349540 + 93824376 93827687 HERVL-int 5654 + 0 3035 16521 205 0 14 429 2 1 107 3 0 183 0 1 4 1 0 130 13 14 514 6 10 142 0 2 611 0 4 88 0 1 132 0 32 187 0 7 136 337 0 81 chain 10332 chr14 107349540 + 93841193 93841351 MSTC-int 1625 + 1462 1617 158977 64 7 0 18 7 11 62 chain 23570 chr14 107349540 + 93841830 93842239 MSTA 426 - 0 426 112738 107 11 19 56 18 17 24 0 2 7 45 51 35 6 7 88 0 1 12 chain 18443 chr14 107349540 + 93842244 93842503 MSTC 436 + 177 436 131661 4 1 0 54 9 10 132 0 1 32 1 0 26 chain 7059 chr14 107349540 + 93854268 93854390 L1M1 2793 - 108 233 177038 12 1 0 34 12 11 49 1 6 13 chain 7061 chr14 107349540 + 93863490 93863571 HY4 93 - 3 84 177022 81 chain 24378 chr14 107349540 + 93865256 93865646 THE1D 372 - 0 372 108205 32 1 0 91 5 11 39 13 11 62 11 7 44 19 0 60 0 2 13 chain 53893 chr14 107349540 + 93869185 93869880 MER4A 717 - 33 717 56432 185 18 6 443 0 1 49 chain 558268 chr14 107349540 + 93879381 93885511 L1PA3long 6157 - 0 6153 476 138 0 7 1091 5 6 274 1 0 283 1 9 387 0 2 227 1 0 2568 0 3 1102 0 4 52 chain 7703 chr14 107349540 + 93889032 93889124 L1MA3 4352 + 2370 2462 172915 92 chain 28306 chr14 107349540 + 93891385 93891746 THE1C 375 - 0 357 91917 117 1 0 138 3 0 102 chain 5215 chr14 107349540 + 93919059 93919180 MIR 256 + 112 225 192874 22 20 10 32 18 20 29 chain 27589 chr14 107349540 + 93926020 93926315 AluYk12 309 - 14 309 94386 295 chain 2748 chr14 107349540 + 93930013 93930119 MIRb 242 - 31 130 229505 18 61 54 27 chain 56561 chr14 107349540 + 93949870 93950559 L1PA5 6144 - 0 683 54817 93 11 1 71 7 0 359 5 16 143 chain 12465 chr14 107349540 + 93960545 93960723 MSTA 426 - 234 419 150395 21 14 0 10 0 20 112 0 1 21 chain 4999 chr14 107349540 + 94001190 94001392 MER97d 503 + 65 266 195148 22 1 0 26 121 121 32 chain 5024 chr14 107349540 + 94017196 94017254 LTR35 598 - 0 58 194882 58 chain 31775 chr14 107349540 + 94025737 94026185 LTR7 482 - 0 482 81206 48 14 15 110 0 2 30 0 31 21 0 1 109 15 14 101 chain 71935 chr14 107349540 + 94029957 94030917 HERVH-int 3825 - 0 3825 47506 291 9 0 512 11 21 31 40 2904 66 chain 27230 chr14 107349540 + 94030924 94031316 LTR7 482 - 5 482 95497 44 13 14 111 0 1 12 1 32 38 0 1 73 0 50 12 11 12 77 chain 6093 chr14 107349540 + 94031942 94032017 MER57A1 433 - 353 433 184474 9 0 5 66 chain 3053 chr14 107349540 + 94033262 94033296 LTR35 598 - 411 445 223941 34 chain 83661 chr14 107349540 + 94067825 94069019 L1PB2 3958 - 120 1297 42051 63 1 0 22 2 0 12 0 1 18 1 2 6 1 0 35 1 0 60 2 1 166 4 0 13 2 0 64 9 5 7 1 0 56 2 0 8 0 1 4 6 5 202 0 1 162 1 0 106 10 9 4 0 1 64 1 0 19 6 7 53 chain 4317 chr14 107349540 + 94082355 94082428 L1PB1 5432 - 10 80 203002 18 1 0 12 2 1 21 1 0 18 chain 21085 chr14 107349540 + 94114101 94114447 THE1B 368 - 20 368 123600 104 22 20 8 0 7 5 3 0 35 1 0 34 26 27 108 chain 7633 chr14 107349540 + 94149762 94149856 MLT1J1 437 - 306 400 173338 94 chain 24836 chr14 107349540 + 94205392 94205686 AluSp 311 - 11 300 105691 6 5 0 283 chain 32089 chr14 107349540 + 94257185 94257673 LTR3A 482 - 0 482 80713 39 0 1 35 1 0 146 64 56 89 5 7 109 chain 23266 chr14 107349540 + 94259388 94259670 AluYk4 311 - 13 287 114358 6 3 0 11 5 0 257 chain 28024 chr14 107349540 + 94270630 94270930 AluYa5 310 + 0 298 92919 132 2 0 166 chain 74757 chr14 107349540 + 94275590 94276489 MER11D 897 - 0 897 46132 280 1 24 118 25 0 187 1 0 4 1 2 282 chain 3675 chr14 107349540 + 94294072 94294117 MIRb 242 - 107 152 212304 45 chain 36174 chr14 107349540 + 94294284 94294734 MLT2A1 477 - 0 477 74673 42 6 0 11 3 39 216 4 1 168 chain 35123 chr14 107349540 + 94330020 94330477 MLT2A1 477 - 0 477 76025 55 5 27 48 0 1 176 4 1 169 chain 27538 chr14 107349540 + 94340527 94340887 THE1B 368 + 0 357 94545 172 2 1 5 0 1 21 2 0 93 1 0 64 chain 44301 chr14 107349540 + 94342107 94342745 MER51A 677 + 0 661 63822 176 17 0 23 10 0 26 13 24 127 0 39 100 20 20 126 chain 7540 chr14 107349540 + 94367746 94367840 MER30 238 + 144 238 173929 94 chain 3161 chr14 107349540 + 94382321 94382357 MER58A 224 - 141 177 221736 36 chain 4000 chr14 107349540 + 94416780 94416832 MIR3 191 + 31 85 207381 5 0 2 47 chain 23801 chr14 107349540 + 94428450 94428705 AluYa5 310 - 1 256 111474 255 chain 15655 chr14 107349540 + 94472128 94472682 L1MB7 1623 - 91 568 139412 14 3 0 11 126 95 36 1 0 6 9 7 18 1 0 4 5 4 14 1 0 9 26 22 7 1 0 17 2 0 3 2 0 7 22 11 22 55 38 132 chain 25516 chr14 107349540 + 94485271 94485584 AluY 311 + 0 302 102155 123 5 0 9 0 1 154 3 0 7 4 0 8 chain 396759 chr14 107349540 + 94532901 94538896 L1PB1 5432 + 19 5384 10214 27 11 12 193 0 2 153 4 0 116 15 14 54 0 5 230 0 3 521 3 0 16 7 0 10 24 22 13 13 8 111 11 10 262 1 0 4 0 1 206 0 1 482 5 0 242 3 5 100 1 0 49 1 4 326 0 3 196 4 0 62 2 1 118 1 2 108 10 13 158 3 5 31 0 1 452 1 0 257 0 2 75 0 2 98 613 14 36 4 5 177 9 10 5 1 0 51 11 11 24 1 0 6 19 14 11 3 1 50 2 1 60 1 0 6 76 59 24 1 0 14 chain 15954 chr14 107349540 + 94547826 94548049 MER41C 542 - 1 259 138506 109 5 24 69 9 25 31 chain 33196 chr14 107349540 + 94550834 94551297 LTR15 485 - 22 485 78894 6 0 1 14 2 0 5 1 0 156 0 4 8 1 0 118 0 2 24 4 0 21 0 1 13 20 20 70 chain 133594 chr14 107349540 + 94556086 94559050 MER41-int 2638 - 2 2048 27301 392 4 3 24 0 1 199 13 13 4 0 1 123 2 0 48 8 11 11 1 0 75 0 10 51 1 0 173 3 9 117 71 92 66 7 14 157 4 5 6 1 0 137 0 2 15 5 0 54 1033 71 8 0 5 61 1 0 37 1 0 51 chain 8042 chr14 107349540 + 94572967 94573094 MSTB 430 - 15 144 170796 32 7 0 46 1 10 41 chain 39120 chr14 107349540 + 94574190 94574670 L1PA6 6164 - 2 483 70575 15 1 0 136 2 3 13 2 3 311 chain 2702 chr14 107349540 + 94597803 94597832 MER20B 722 - 58 87 230217 29 chain 439540 chr14 107349540 + 94613034 94618321 L1PA7 6471 - 1 6456 9064 12 1 0 316 5 6 519 0 3 93 1 0 108 0 1 212 0 4 247 1 0 315 0 1 145 0 1 218 2 33 30 0 1 279 0 1 89 1 0 249 0 1 33 0 4 649 0 1 9 0 1 19 1 0 97 2 0 69 0 1 62 4 0 383 0 2 185 34 11 389 6 1153 106 0 1 396 chain 13488 chr14 107349540 + 94618617 94618841 THE1D 372 + 149 360 146397 17 0 6 6 37 17 140 1 2 23 chain 28878 chr14 107349540 + 94620748 94621123 THE1C 375 + 0 375 89552 185 1 0 98 6 7 85 chain 101092 chr14 107349540 + 94621166 94622650 THE1C-int 1605 + 45 1594 36486 51 1 58 14 3 0 129 0 1 31 0 6 110 5 12 284 16 10 95 9 10 144 16 18 5 2 0 91 2 0 5 0 2 54 5 4 91 73 74 185 0 2 63 chain 3443 chr14 107349540 + 94625352 94625392 LTR85a 401 - 198 238 216324 40 chain 50602 chr14 107349540 + 94625642 94626428 L1PB1 5432 - 14 798 58575 14 1 0 9 0 3 22 1 0 24 58 54 11 1 0 44 1 0 16 2 1 53 2 0 8 6 2 11 10 8 23 7 0 8 2 5 32 0 6 26 0 9 156 0 1 238 chain 3885 chr14 107349540 + 94661912 94662083 MER20 218 - 44 217 209099 45 109 111 17 chain 26819 chr14 107349540 + 94666742 94667127 L1PB 1623 - 1142 1521 96912 62 6 5 11 1 0 134 1 0 78 2 0 4 1 0 12 0 2 56 1 0 5 1 0 10 chain 14319 chr14 107349540 + 94668129 94668405 L1PB1 5432 + 4967 5220 143497 139 87 64 50 chain 11743 chr14 107349540 + 94668407 94668630 L1PB1 5432 + 5221 5422 153288 16 4 3 41 1 0 14 2 0 7 16 6 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 25036 chr14 107349540 + 94705537 94705825 L1PA5 6144 - 0 287 104614 259 1 0 28 chain 49847 chr14 107349540 + 94714209 94714902 L1P4 1494 + 99 797 59123 24 1 0 22 10 9 401 9 14 165 3 4 45 1 2 12 chain 26465 chr14 107349540 + 94725197 94725552 THE1B 368 - 12 368 98183 65 1 0 119 8 7 123 0 5 24 3 1 12 chain 18681 chr14 107349540 + 94734888 94735192 THE1B 368 - 0 309 130996 56 1 2 70 49 55 16 2 0 110 chain 24735 chr14 107349540 + 94763651 94764006 THE1A 353 - 0 353 106252 222 22 23 14 1 0 20 1 0 26 0 1 32 2 0 15 chain 116080 chr14 107349540 + 94764014 94765563 THE1A-int 1579 - 8 1579 32424 4 0 1 4 1 0 328 4 17 236 0 1 158 13 15 43 14 15 92 0 1 4 1 0 4 3 6 228 1 2 110 0 1 4 10 9 198 7 8 82 chain 22923 chr14 107349540 + 94765563 94765918 THE1A 353 - 0 353 115999 224 53 52 29 0 1 34 2 0 13 chain 118340 chr14 107349540 + 94767526 94768831 L1PA5 6144 + 4831 6144 31677 853 0 1 314 0 7 138 chain 17608 chr14 107349540 + 94769101 94769434 THE1D 372 - 47 372 133972 80 1 7 12 41 42 52 0 4 53 41 22 53 chain 5624 chr14 107349540 + 94824879 94824943 MSTA 426 + 273 337 188835 64 chain 4481 chr14 107349540 + 94853556 94853608 MIR 256 + 71 123 200997 52 chain 10600 chr14 107349540 + 94875953 94876089 MER65A 464 - 136 278 157829 105 0 7 22 1 0 8 chain 16163 chr14 107349540 + 94877548 94877746 AluY 311 + 71 269 137863 52 1 0 9 0 1 136 chain 43545 chr14 107349540 + 94880562 94881054 MER9a2 513 + 2 494 64745 492 chain 26516 chr14 107349540 + 94897578 94897973 MSTA 426 + 0 425 97985 99 9 29 26 0 6 10 8 12 38 19 20 4 1 0 181 chain 23885 chr14 107349540 + 94901631 94901988 THE1B 368 + 0 356 110991 44 5 20 39 3 4 62 1 0 23 2 0 87 0 1 26 16 1 49 chain 2495 chr14 107349540 + 94903168 94903268 MER1A 529 - 265 367 233174 16 49 50 7 1 0 16 0 2 11 chain 402045 chr14 107349540 + 94919409 94924802 L1PB1 5432 - 5 5423 10026 4 1 0 5 1 0 14 1 0 13 1 0 21 3 2 11 7 0 6 0 5 15 1 0 4 3 1 13 0 8 9 20 0 15 1 0 60 2 1 48 20 14 11 1 0 9 1 0 24 1 0 11 5 0 120 0 1 167 0 8 181 2 0 19 8 16 105 9 7 442 3 18 56 0 1 48 4 3 105 0 1 81 0 3 555 0 12 40 0 2 60 1 0 36 12 9 173 5 1 13 1 0 238 0 5 21 2 5 4 0 1 44 1 0 9 5 0 46 3 1 64 0 4 107 24 24 837 1 7 278 7 2 487 26 29 16 3 4 29 4 5 106 10 19 177 1 0 4 0 1 48 0 7 171 1 0 11 chain 81052 chr14 107349540 + 94948542 94949540 LTR5B 1012 + 0 1003 43164 137 0 14 361 18 20 16 12 0 111 0 1 343 chain 29006 chr14 107349540 + 94961397 94961704 AluYa5 310 - 3 310 88960 307 chain 25626 chr14 107349540 + 94976668 94977067 L1PB2 3958 + 3449 3838 101600 7 9 0 71 0 1 17 15 3 34 0 1 35 1 0 63 2 1 73 10 21 62 chain 402451 chr14 107349540 + 95017038 95022502 L1PB1 5432 - 10 5402 10015 18 1 0 13 1 0 21 1 0 26 2 0 12 8 5 19 27 16 11 1 0 44 1 0 15 3 2 50 3 1 11 6 2 9 1 0 9 1 0 24 15 13 480 7 6 314 1 0 82 0 1 7 1 0 213 7 6 260 3 0 6 0 5 29 0 1 157 0 4 576 12 14 61 0 2 34 2 1 7 0 1 249 0 1 64 0 1 7 0 9 7 17 1 55 6 0 9 0 6 822 0 5 201 15 0 270 14 13 231 26 10 107 0 13 80 0 1 29 10 0 3 2 0 36 1 6 190 28 5 373 chain 7651 chr14 107349540 + 95063349 95063444 L1PA7 6471 - 5 98 173219 7 2 0 86 chain 176314 chr14 107349540 + 95073735 95075814 L1PA6 6164 + 4072 6154 21324 137 7 10 1783 0 7 14 7 0 131 chain 86120 chr14 107349540 + 95092474 95093480 LTR5A 1029 + 0 1029 41112 11 1 5 134 7 20 699 0 7 86 1 0 67 chain 9580 chr14 107349540 + 95097568 95097713 L1MB5 1630 + 1323 1467 162697 57 0 1 11 1 0 39 4 6 5 2 0 19 1 0 6 chain 28061 chr14 107349540 + 95102223 95102722 L1PB1 5432 + 4944 5423 92785 70 0 2 87 1 2 10 3 0 27 3 2 14 5 10 50 2 1 18 6 5 38 1 0 16 1 0 4 2 0 11 9 0 16 12 9 10 2 0 24 1 0 22 1 0 12 1 0 12 1 0 7 chain 132652 chr14 107349540 + 95123762 95125235 SVA_D 2077 + 12 2077 27486 19 0 24 487 0 40 179 0 40 115 7 496 26 1 0 639 chain 9963 chr14 107349540 + 95129425 95129546 LTR47A 437 + 301 422 160763 121 chain 24755 chr14 107349540 + 95184378 95184678 AluSp 311 + 0 299 106140 32 1 0 267 chain 7262 chr14 107349540 + 95291359 95291471 LTR40b 463 + 349 463 175703 51 18 20 43 chain 28390 chr14 107349540 + 95310020 95310395 THE1C 375 - 2 375 91619 24 1 0 155 7 8 61 3 0 5 0 1 119 chain 18478 chr14 107349540 + 95348416 95348778 THE1B 368 - 0 368 131567 56 1 2 6 1 0 61 11 19 10 0 4 10 1 0 7 18 9 6 0 3 6 1 0 34 51 53 82 chain 22232 chr14 107349540 + 95382313 95382580 AluSp 311 + 10 277 119199 267 chain 29008 chr14 107349540 + 95384141 95384451 AluYa5 310 - 1 310 88948 183 1 0 126 chain 60255 chr14 107349540 + 95390883 95391543 L1PA3long 6157 + 5496 6156 52705 660 chain 24802 chr14 107349540 + 95395317 95395622 AluY 311 + 0 299 105877 133 16 10 156 chain 6219 chr14 107349540 + 95427221 95427380 MIR 256 + 57 224 183407 57 0 2 20 68 74 14 chain 18731 chr14 107349540 + 95439809 95440027 AluY 311 + 84 302 130876 218 chain 235341 chr14 107349540 + 95448596 95451735 L1PBa 3878 + 571 3738 17006 33 13 18 183 0 4 165 10 12 8 1 0 66 0 3 46 4 5 321 0 4 18 0 4 91 0 1 69 10 6 174 8 19 101 9 5 117 0 7 86 8 6 314 0 1 5 1 0 203 4 0 40 6 0 8 1 10 236 0 1 86 1 2 173 4 0 254 7 8 231 2 1 22 chain 3520 chr14 107349540 + 95476040 95476112 MER53 195 - 4 76 215063 15 15 8 21 0 7 21 chain 3891 chr14 107349540 + 95532626 95532724 HAL1-2a_MD 234 + 26 125 209015 23 10 8 19 6 0 7 13 22 20 chain 19149 chr14 107349540 + 95549522 95549766 AluSc 308 + 13 256 129683 65 6 5 173 chain 2843 chr14 107349540 + 95602033 95602102 L1MB1 2102 - 136 204 227961 16 13 11 22 3 4 15 chain 26928 chr14 107349540 + 95605031 95605317 L1HS 6032 + 5746 6032 96520 286 chain 5030 chr14 107349540 + 95609634 95609699 MER67C 710 + 1 64 194833 55 2 0 8 chain 17092 chr14 107349540 + 95635615 95635849 MER1B 344 - 0 244 135340 55 17 27 162 chain 150707 chr14 107349540 + 95641842 95643535 L1PA5 6144 - 2 1692 24515 722 0 1 83 1 0 307 3 0 577 chain 20033 chr14 107349540 + 95644674 95644946 L1MA3 4352 - 658 929 127035 243 11 10 18 chain 15824 chr14 107349540 + 95667320 95667502 L1PA7 6471 + 6282 6466 138877 30 0 2 152 chain 56751 chr14 107349540 + 95667919 95668683 L1PA8 5853 - 0 765 54684 93 1 0 16 1 0 56 6 11 63 7 5 45 1 0 180 2 0 82 11 8 112 0 6 88 chain 8801 chr14 107349540 + 95681343 95681454 L1PA7 6471 + 6361 6469 166639 97 3 0 11 chain 16321 chr14 107349540 + 95682434 95682727 THE1B 368 - 70 368 137435 48 68 75 6 2 0 61 2 0 5 0 2 101 chain 25933 chr14 107349540 + 95729401 95729775 THE1C 375 - 0 369 100289 25 1 0 101 8 2 14 7 8 31 7 9 9 1 0 170 chain 62173 chr14 107349540 + 95745717 95747366 MER41-int 2638 + 184 1173 51817 8 0 1 20 3 1 16 9 7 11 1 0 7 4 0 42 325 5 47 1 0 79 24 18 14 1 0 97 0 2 72 0 1 41 2 0 22 14 15 96 337 17 19 2 0 131 1 0 8 3 0 9 23 23 160 chain 27788 chr14 107349540 + 95749384 95749722 THE1A 353 + 0 341 93744 12 0 4 94 1 0 231 chain 119620 chr14 107349540 + 95749735 95751273 THE1A-int 1579 + 0 1579 31172 107 3 0 6 6 9 80 0 28 123 0 1 529 6 5 335 1 14 10 0 3 26 17 13 33 0 1 55 0 1 181 1 0 19 chain 11101 chr14 107349540 + 95776459 95776611 MSTB 430 + 261 418 155796 46 5 10 101 chain 14010 chr14 107349540 + 95820561 95820719 L1PA5 6144 + 5983 6141 144545 158 chain 28048 chr14 107349540 + 95855475 95855772 AluYa5 310 - 14 310 92833 170 1 0 126 chain 28052 chr14 107349540 + 95868915 95869454 L1MA5A 2387 + 1884 2375 92821 128 18 21 38 2 1 35 1 0 50 2 0 24 1 0 31 6 5 13 27 0 22 0 1 33 46 31 13 1 0 9 2 1 22 2 0 13 chain 78115 chr14 107349540 + 95892939 95894236 LTR13 1007 + 0 1007 44452 73 290 9 182 0 1 116 16 17 287 21 13 205 1 0 62 16 14 28 chain 25110 chr14 107349540 + 95900995 95901290 AluSp 311 - 13 311 104229 204 0 3 91 chain 25011 chr14 107349540 + 95923149 95923439 AluY 311 + 10 300 104729 290 chain 3084 chr14 107349540 + 96024322 96024355 Kanga2_a 737 - 436 469 223267 33 chain 41461 chr14 107349540 + 96024355 96025043 L1PA16 3655 + 2979 3619 67334 142 39 16 56 9 8 90 2 0 226 9 13 22 65 44 7 5 0 16 chain 9957 chr14 107349540 + 96039180 96039300 MER50 708 - 30 150 160795 120 chain 22115 chr14 107349540 + 96046721 96047034 THE1C 375 - 0 305 119727 26 1 0 134 11 8 17 1 0 8 0 1 56 3 0 21 1 0 34 chain 30480 chr14 107349540 + 96049064 96049472 MLT2A1 477 - 73 477 83471 8 9 0 221 6 10 24 0 1 140 chain 129289 chr14 107349540 + 96049840 96051413 THE1A-int 1579 - 6 1579 28245 30 1 2 167 1 0 1374 chain 24814 chr14 107349540 + 96051413 96051743 THE1A 353 - 0 353 105814 80 1 0 39 7 32 92 2 1 109 chain 66989 chr14 107349540 + 96057268 96058054 L1PA7 6471 + 5659 6461 49657 38 0 16 145 0 7 189 13 6 401 chain 20693 chr14 107349540 + 96061101 96061416 THE1C 375 + 0 322 124989 186 28 29 10 3 6 28 0 2 4 0 1 56 chain 3000 chr14 107349540 + 96062261 96062305 LTR16B2 458 - 50 92 225036 36 2 0 6 chain 34525 chr14 107349540 + 96063574 96064032 LTR19B 566 - 126 566 76871 117 14 6 19 6 0 62 4 0 236 chain 43980 chr14 107349540 + 96116744 96117225 LTR12C 1709 + 1228 1709 64228 481 chain 13348 chr14 107349540 + 96121469 96121625 THE1D 372 + 210 366 146892 156 chain 2697 chr14 107349540 + 96131314 96131347 MIRb 242 - 189 221 230247 19 1 0 13 chain 3462 chr14 107349540 + 96147140 96147178 MER101 471 + 0 38 215966 38 chain 22899 chr14 107349540 + 96161935 96162215 AluSp 311 - 13 301 116113 166 2 0 75 5 15 32 chain 48133 chr14 107349540 + 96195662 96196430 LTR5B 1012 - 216 1000 60378 46 0 2 104 7 0 6 104 114 19 6 6 11 1 0 114 12 11 208 4 18 9 1 0 116 chain 8801 chr14 107349540 + 96196438 96196564 LTR19A 502 + 375 502 166645 85 6 7 35 chain 38798 chr14 107349540 + 96200412 96200885 LTR10F 562 - 0 561 71019 193 2 1 6 0 1 67 1 0 32 0 87 97 0 1 30 0 1 45 chain 23710 chr14 107349540 + 96219684 96219954 L1PA5 6144 + 5852 6126 111976 196 0 4 74 chain 40096 chr14 107349540 + 96235623 96236122 MER9a1 513 - 0 513 69188 15 15 7 224 1 23 244 chain 20805 chr14 107349540 + 96315266 96315598 L1MA1 4479 - 319 630 124582 9 1 0 9 1 0 31 7 5 28 1 0 52 0 1 4 0 3 66 3 0 64 18 2 27 1 0 10 chain 21821 chr14 107349540 + 96318368 96318625 AluY 311 + 41 298 120939 257 chain 5219 chr14 107349540 + 96374100 96374196 MER52C 1267 - 213 311 192837 49 25 27 22 chain 23077 chr14 107349540 + 96379497 96379791 L1PA8 5853 - 0 285 115262 93 4 0 19 2 1 48 1 0 11 1 0 73 2 0 40 chain 33594 chr14 107349540 + 96423441 96423889 LTR2B 499 + 34 499 78247 31 2 0 46 0 7 7 4 16 167 0 1 8 1 0 182 chain 39978 chr14 107349540 + 96426345 96426798 L1PA7 6471 + 5986 6454 69347 435 0 15 18 chain 6682 chr14 107349540 + 96429999 96430129 MER5A 189 - 58 189 179819 7 0 1 12 37 37 74 chain 308242 chr14 107349540 + 96439769 96443539 HERVH-int 3825 + 0 3825 13077 328 1 149 13 1 2 40 5 0 38 65 0 10 1 0 10 4 0 13 71 1 15 1 0 11 4 42 26 2 1 56 0 1 8 12 15 62 0 1 362 0 9 1841 0 1 380 0 3 10 3 0 377 chain 27698 chr14 107349540 + 96444798 96445197 LTR7 482 + 0 482 94047 69 8 46 109 8 40 43 6 17 95 12 14 49 chain 45286 chr14 107349540 + 96459407 96459961 MER41A 554 - 0 554 62736 554 chain 28687 chr14 107349540 + 96463565 96464015 L1PA13 3608 - 140 575 90378 20 9 5 41 8 6 4 1 0 30 3 0 26 1 0 63 2 0 32 2 1 75 6 5 27 0 2 6 2 0 92 chain 296843 chr14 107349540 + 96469003 96473005 L1PA10 4194 + 187 4161 13598 13 3 0 7 2 0 9 12 8 8 2 0 8 6 5 5 1 0 21 2 0 16 55 40 8 2 0 21 79 63 63 4 2 40 0 3 470 0 1 158 1 0 54 4 17 31 6 7 568 0 1 172 3 1 32 1 4 30 0 1 543 6 7 55 0 4 854 2 0 10 1 5 554 2 1 9 3 0 34 1 0 11 chain 29410 chr14 107349540 + 96476400 96476803 MSTB 430 - 0 402 87014 221 0 1 7 3 0 59 3 0 6 0 3 10 2 3 92 chain 38146 chr14 107349540 + 96479216 96479687 LTR2B 499 + 9 498 71916 5 1 0 86 5 24 184 0 1 10 1 0 179 chain 5277 chr14 107349540 + 96497434 96497500 L1PA16 3655 + 3515 3586 192238 59 0 5 7 chain 3242 chr14 107349540 + 96515184 96515269 L1MC1 2226 - 339 421 220180 31 36 33 18 chain 3154 chr14 107349540 + 96535645 96535692 Ricksha_c 1012 + 559 605 221873 26 2 1 19 chain 8572 chr14 107349540 + 96559166 96559326 MER20 218 + 46 206 167897 22 38 39 77 1 0 22 chain 12594 chr14 107349540 + 96565899 96566043 L1PA5 6144 + 5988 6132 149863 144 chain 4659 chr14 107349540 + 96571378 96571434 MER81 114 + 1 57 198965 56 chain 8288 chr14 107349540 + 96587520 96587632 MER85 139 - 2 139 169470 27 0 11 70 0 14 15 chain 2944 chr14 107349540 + 96594790 96594824 MER45B 1037 - 73 107 226242 34 chain 10718 chr14 107349540 + 96613137 96613265 L1PBa 3878 - 1739 1868 157334 64 0 1 64 chain 22735 chr14 107349540 + 96656842 96657139 MER4E1 777 - 4 298 116898 109 0 1 112 22 18 54 chain 36356 chr14 107349540 + 96657188 96657682 L1PA8 5853 - 0 489 74424 93 1 0 19 3 2 4 0 1 55 1 0 13 1 0 57 2 0 44 7 6 62 0 1 132 chain 40588 chr14 107349540 + 96657944 96658426 MER4E1 777 + 0 483 68457 22 2 3 458 chain 24884 chr14 107349540 + 96696193 96696492 AluY 311 + 10 302 105440 116 5 0 171 2 0 5 chain 9149 chr14 107349540 + 96723794 96723901 THE1B 368 - 261 368 164816 107 chain 22961 chr14 107349540 + 96726362 96726658 AluSg7 307 - 10 307 115800 151 14 15 131 chain 3567 chr14 107349540 + 96770518 96770584 MER5A 189 + 95 162 214171 20 14 15 32 chain 8715 chr14 107349540 + 96809657 96809753 L1PA3long 6157 + 6061 6157 167119 96 chain 44113 chr14 107349540 + 96821151 96821781 L1PA11 4918 - 415 1052 64069 15 1 0 6 11 9 44 0 1 22 5 3 8 1 0 70 1 0 14 0 1 125 0 5 7 2 1 116 1 2 5 1 0 109 1 9 65 chain 5849 chr14 107349540 + 96834931 96837172 MSTB1 431 + 34 394 186698 21 21 23 41 2098 215 60 chain 5544 chr14 107349540 + 96841690 96841759 MSTC 436 - 3 72 189616 69 chain 10001 chr14 107349540 + 96850971 96851137 U2 167 + 7 166 160573 123 11 7 5 2 0 13 2 1 10 chain 76691 chr14 107349540 + 96888255 96889129 MER11D 897 - 0 897 45128 281 0 23 593 chain 423875 chr14 107349540 + 96894305 96900100 L1PA5 6144 - 1 5117 9448 15 0 2 640 0 1 499 0 1 50 0 1 999 316 0 205 5 12 38 1 0 304 0 9 23 0 5 54 0 1 126 1 0 313 3 6 83 0 1 5 1 0 92 3 2 162 0 1 157 122 5 27 12 0 332 0 3 140 286 0 660 13 4 82 13 43 13 chain 8894 chr14 107349540 + 96907030 96908113 MER4A 717 - 4 717 166164 4 1 0 35 0 1 23 936 566 84 chain 7913 chr14 107349540 + 96909999 96910110 MER30 238 - 8 116 171564 36 1 4 52 2 0 8 4 0 8 chain 24582 chr14 107349540 + 96931527 96931811 AluY 311 + 11 294 107074 112 1 0 148 1 0 8 0 1 14 chain 5865 chr14 107349540 + 96938428 96938509 L1MB1 2102 - 96 179 186542 19 0 4 41 2 0 19 chain 24539 chr14 107349540 + 96956493 96956774 AluY 311 + 16 297 107314 281 chain 27900 chr14 107349540 + 96973617 96973911 AluYd8 298 - 4 298 93370 294 chain 2948 chr14 107349540 + 96974057 96974112 Charlie1a 1436 + 1391 1436 226107 19 10 0 26 chain 24908 chr14 107349540 + 96984744 96985033 AluYc3 301 - 13 301 105293 5 2 0 168 1 2 113 chain 6303 chr14 107349540 + 97062301 97062377 MER2 342 - 127 203 182766 76 chain 57223 chr14 107349540 + 97067405 97068226 L1PB1 5432 - 12 800 54387 16 1 0 11 5 4 19 1 0 24 2 0 14 1 0 4 1 0 3 1 0 12 8 0 17 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 5 1 11 1 0 8 1 0 24 1 0 8 6 3 297 2 1 100 0 2 71 chain 19842 chr14 107349540 + 97073895 97074195 THE1B 368 + 0 306 127675 168 2 1 27 39 46 64 chain 11964 chr14 107349540 + 97109219 97109564 L1MA4A 3247 - 118 428 152346 20 6 5 136 3 0 13 146 116 13 1 0 7 chain 43606 chr14 107349540 + 97138836 97139340 L1PA7 6471 - 6 509 64678 6 2 0 123 0 1 373 chain 8912 chr14 107349540 + 97146509 97146653 MLT1A0 366 + 0 160 166077 13 0 1 7 31 46 93 chain 23573 chr14 107349540 + 97169607 97169978 THE1B 368 + 0 368 112724 15 2 0 32 0 1 63 0 3 5 14 21 27 37 28 96 3 0 77 chain 24928 chr14 107349540 + 97183856 97184160 AluY 311 + 0 300 105171 118 1 0 15 4 1 166 chain 23749 chr14 107349540 + 97185220 97185500 AluSp 311 - 20 300 111779 280 chain 45068 chr14 107349540 + 97186991 97187538 MER41A 554 - 0 554 62974 103 0 7 444 chain 269443 chr14 107349540 + 97230981 97233960 L1PA4 6152 - 9 2990 15209 842 1 0 1861 0 3 275 chain 11677 chr14 107349540 + 97243606 97243794 MER30B 195 - 0 190 153574 39 0 3 73 19 9 27 4 13 26 chain 20850 chr14 107349540 + 97259374 97259685 THE1C 375 - 0 375 124463 26 1 0 126 5 8 18 11 12 47 3 64 74 chain 3649 chr14 107349540 + 97275172 97275217 MLT1G 592 - 42 90 212811 5 0 3 40 chain 98117 chr14 107349540 + 97285854 97287130 HSMAR1 1287 - 0 1287 37245 78 0 4 527 35 43 71 5 0 121 0 1 124 4 5 148 1 3 162 chain 8929 chr14 107349540 + 97304979 97305088 THE1C 375 - 266 375 165991 109 chain 85573 chr14 107349540 + 97349380 97350300 L1PA2 6032 - 528 1451 41315 230 0 3 690 chain 47588 chr14 107349540 + 97350300 97350835 L1PA2 6032 + 5500 6032 60775 195 0 1 63 2 0 260 2 0 13 chain 23518 chr14 107349540 + 97381836 97382215 THE1D 372 + 0 372 113030 62 0 1 4 1 0 95 0 1 17 39 44 13 13 1 101 2 1 32 chain 42359 chr14 107349540 + 97387092 97387656 PRIMA4_LTR 623 - 0 623 66206 182 0 1 53 13 72 52 1 3 72 5 1 138 0 1 48 chain 4063 chr14 107349540 + 97422637 97422692 MER33 330 - 106 166 206436 12 0 4 12 0 1 31 chain 4712 chr14 107349540 + 97428164 97428229 L1MB3 1562 + 1489 1553 198364 35 1 0 29 chain 22908 chr14 107349540 + 97469708 97470062 THE1B 368 + 0 366 116074 127 6 7 38 2 3 23 35 45 123 chain 23925 chr14 107349540 + 97473406 97473737 THE1A 353 + 20 353 110780 27 0 1 46 1 0 13 23 24 175 0 1 46 chain 3285 chr14 107349540 + 97474496 97474538 LTR33 499 - 346 388 219268 42 chain 3819 chr14 107349540 + 97526198 97526289 MER58B 340 - 176 269 210111 25 31 32 28 0 1 7 chain 4890 chr14 107349540 + 97542118 97542183 L1MB1 2102 - 153 216 196369 7 2 0 56 chain 19269 chr14 107349540 + 97595508 97595861 THE1C 375 - 0 370 129323 140 41 49 88 9 11 16 25 34 24 2 0 8 chain 23476 chr14 107349540 + 97625503 97625854 THE1B 368 - 0 365 113237 70 5 4 90 9 11 21 12 11 77 1 0 25 0 15 41 chain 60241 chr14 107349540 + 97627384 97628072 L1PA5 6144 + 5447 6136 52710 457 0 1 231 chain 72356 chr14 107349540 + 97633115 97633912 L1PA3long 6157 + 5359 6156 47318 797 chain 42459 chr14 107349540 + 97633967 97634450 L1PA5 6144 + 5666 6144 66061 331 5 0 147 chain 3122 chr14 107349540 + 97641501 97641537 MIR 256 + 112 148 222511 36 chain 80061 chr14 107349540 + 97653478 97654370 L1PA4 6152 - 9 900 43560 251 1 0 640 chain 376341 chr14 107349540 + 97656819 97662469 L1PB1 5432 - 10 5364 10870 18 1 0 13 1 0 21 2 1 23 1 0 15 8 5 17 26 15 13 1 0 44 1 0 16 2 1 52 2 0 9 18 13 8 1 0 24 5 0 9 6 7 51 0 1 4 9 8 55 13 11 61 310 0 277 4 0 166 2 6 123 1 0 167 0 4 197 6 5 225 3 1 108 3 0 31 1 4 586 0 1 87 0 2 73 3 2 12 7 4 7 0 1 28 0 5 96 0 5 97 1 20 75 2 0 123 0 1 14 0 1 105 0 1 194 0 6 610 24 33 9 1 0 41 32 33 38 0 5 32 4 8 252 7 8 90 1 2 4 1 0 108 0 1 6 2 1 37 24 18 201 5 6 189 18 17 230 chain 41783 chr14 107349540 + 97692786 97693324 MLT2A2 560 + 0 560 66922 193 9 18 189 2 13 63 0 2 82 chain 35455 chr14 107349540 + 97726262 97726664 L1PA5 6144 + 5734 6137 75612 255 0 1 147 chain 14057 chr14 107349540 + 97730983 97731158 Tigger3b 1229 + 1016 1191 144359 175 chain 4182 chr14 107349540 + 97745078 97745126 MER103C 291 + 121 169 204812 48 chain 13041 chr14 107349540 + 97786962 97787140 MLT2A2 560 + 0 196 148075 33 8 26 67 0 1 56 1 0 13 chain 5085 chr14 107349540 + 97787165 97787222 MSTA 426 - 361 418 194231 57 chain 63448 chr14 107349540 + 97789106 97789838 L1PA5 6144 - 0 733 51265 338 0 1 394 chain 20110 chr14 107349540 + 97789838 97790071 L1PA5 6144 + 5097 5330 126795 233 chain 9671 chr14 107349540 + 97793504 97793638 THE1B 368 - 219 368 162239 85 5 20 44 chain 22294 chr14 107349540 + 97806392 97806720 THE1B 368 + 18 368 118935 26 9 24 106 4 3 122 12 20 49 chain 7302 chr14 107349540 + 97816912 97817068 MER58A 224 + 29 185 175432 85 48 49 5 1 0 17 chain 4255 chr14 107349540 + 97817237 97817410 MER63A 208 - 0 163 203827 36 40 31 25 58 57 14 chain 21766 chr14 107349540 + 97830399 97830753 MER83B 357 + 0 335 121152 10 6 1 49 1 0 8 16 0 17 0 3 24 10 1 19 11 20 183 chain 56792 chr14 107349540 + 97860407 97861029 L1PA2 6032 - 0 622 54658 622 chain 18850 chr14 107349540 + 97892880 97893148 AluY 311 + 37 304 130513 95 6 7 130 5 9 20 6 0 6 chain 3084 chr14 107349540 + 97918830 97918863 MER58A 224 - 143 176 223265 33 chain 39840 chr14 107349540 + 97933211 97933739 LTR10D 510 - 0 510 69556 239 19 0 40 1 0 132 1 0 13 2 0 10 1 6 70 chain 4861 chr14 107349540 + 97935292 97935349 UCON24 85 - 14 71 196675 57 chain 4147 chr14 107349540 + 97964130 97964288 MER58A 224 - 23 182 205284 42 94 95 22 chain 16235 chr14 107349540 + 97972226 97972430 HSMAR1 1287 - 1075 1279 137660 204 chain 124104 chr14 107349540 + 97973703 97975261 THE1A-int 1579 + 0 1579 29663 317 0 10 393 17 19 505 0 1 234 0 8 92 chain 25023 chr14 107349540 + 98005462 98005826 THE1C 375 + 0 375 104668 107 1 2 16 3 0 57 12 13 16 7 21 118 2 0 25 chain 23663 chr14 107349540 + 98117686 98118054 THE1D 372 + 0 372 112235 102 1 0 57 60 65 148 chain 40017 chr14 107349540 + 98132175 98132729 MLT2A2 560 + 0 560 69299 395 8 19 99 25 20 27 chain 517314 chr14 107349540 + 98140708 98147182 L1PA7 6471 + 44 6457 5445 51 5 10 236 0 1 64 1 0 77 1 0 4 0 1 125 9 0 37 0 1 510 5 17 100 26 79 244 0 3 292 0 3 352 1 0 39 0 2 349 25 1 842 0 2 11 1 0 489 2 0 4 132 0 382 1 0 70 0 9 156 0 2 60 0 8 120 0 5 147 1 0 665 0 2 224 5 7 289 0 1 320 chain 48206 chr14 107349540 + 98195574 98196168 L1PA7 6471 - 2 587 60310 16 8 0 50 1 0 519 chain 366390 chr14 107349540 + 98202943 98207898 L1PA8A 6298 - 7 6217 11201 566 1 2 237 0 2 527 36 1 71 0 1 65 1 0 690 1 2 157 2 1 5 0 1 84 0 1 397 1 0 329 6 7 176 0 4 323 2 0 127 12 7 624 5 1343 102 20 17 14 2 0 22 23 23 33 8 0 10 24 23 31 2 0 8 12 7 7 1 0 9 1 0 5 31 26 15 85 70 21 3 0 11 4 0 6 chain 34256 chr14 107349540 + 98211157 98211592 L1PA7 6471 + 5179 5614 77268 51 0 3 5 4 1 375 chain 6633 chr14 107349540 + 98211592 98211673 L1PA7 6471 + 5617 5698 180213 81 chain 35951 chr14 107349540 + 98211673 98212122 L1PA7 6471 + 5700 6136 74955 286 13 0 150 chain 3429 chr14 107349540 + 98247333 98247374 MER58A 224 + 42 83 216605 41 chain 5835 chr14 107349540 + 98254003 98254067 L1PA5 6144 + 6064 6128 186808 64 chain 63230 chr14 107349540 + 98282921 98283623 L1PA5 6144 - 5 707 51350 702 chain 61273 chr14 107349540 + 98283624 98284320 L1PA5 6144 + 4620 5322 52220 452 0 6 244 chain 18319 chr14 107349540 + 98290968 98291336 THE1B 368 - 0 359 132028 33 50 12 4 1 0 75 35 46 30 1 0 23 0 2 65 16 34 35 chain 3772 chr14 107349540 + 98300420 98300465 MADE1 96 - 2 47 210782 45 chain 3307 chr14 107349540 + 98342049 98342090 MADE1 96 + 55 96 218826 41 chain 53139 chr14 107349540 + 98342339 98342989 L1PA7 6471 + 5818 6467 56933 495 8 9 137 2 0 8 chain 14858 chr14 107349540 + 98346961 98347229 L1MA6 2487 + 1928 2192 141764 67 53 52 8 0 1 4 1 0 7 3 0 125 chain 27368 chr14 107349540 + 98454895 98455190 AluYd8 298 - 3 298 95057 97 0 1 4 1 0 193 chain 84592 chr14 107349540 + 98468536 98469506 L1PA5 6144 - 2076 3049 41608 666 0 3 304 chain 181704 chr14 107349540 + 98469506 98471573 L1PA5 6144 + 4071 6137 20819 171 0 1 101 0 4 426 2 4 243 9 1 400 0 1 385 1 0 83 1 0 110 0 1 135 chain 20748 chr14 107349540 + 98524989 98525336 MLT2A1 477 + 0 385 124796 60 34 41 41 0 1 25 1 5 115 22 48 49 chain 2337 chr14 107349540 + 98545724 98545768 MADE1 96 + 51 96 234912 18 6 7 20 chain 48379 chr14 107349540 + 98555419 98556056 L1PA7 6471 - 5 638 60196 7 3 0 327 1 0 121 3 1 5 0 2 44 21 21 105 chain 79719 chr14 107349540 + 98556081 98557040 L1PA7 6471 + 4704 5664 43727 245 6 0 34 0 2 542 0 2 85 0 3 47 chain 26853 chr14 107349540 + 98567132 98567550 L1MA2 4263 + 2114 2539 96796 36 65 69 238 0 1 5 0 2 74 chain 4537 chr14 107349540 + 98598798 98598963 MLT2B4 540 + 156 335 200385 51 98 112 16 chain 18472 chr14 107349540 + 98707305 98707626 Tigger4b 360 + 6 353 131578 56 8 9 30 15 38 18 1 2 24 1 0 25 1 3 11 11 12 63 1 0 56 chain 28618 chr14 107349540 + 98713819 98714123 AluYg6 310 - 5 310 90666 167 0 1 137 chain 11260 chr14 107349540 + 98718765 98718904 L1PA8 5853 + 5716 5853 155193 27 1 0 17 1 0 93 chain 54037 chr14 107349540 + 98749318 98749941 L1PA4 6152 - 0 626 56336 6 0 5 102 0 1 203 0 1 146 4 0 162 chain 5059 chr14 107349540 + 98763520 98763584 MIR 256 + 72 136 194539 64 chain 34663 chr14 107349540 + 98779208 98779643 L1PA7 6471 - 18 447 76671 137 0 1 41 14 7 243 chain 3609 chr14 107349540 + 98798033 98798076 MADE1 96 - 53 96 213489 43 chain 23106 chr14 107349540 + 98827461 98827751 AluSg7 307 - 10 307 115112 20 1 7 138 0 1 131 chain 18290 chr14 107349540 + 98906535 98906913 THE1D 372 - 15 370 132103 23 9 0 86 13 16 35 28 32 4 1 0 57 7 6 15 1 11 13 35 6 51 chain 29145 chr14 107349540 + 98913137 98913542 LTR7 482 - 8 482 88337 168 0 1 13 9 7 20 9 41 109 9 47 68 chain 245405 chr14 107349540 + 98915303 98918526 HERVH-int 3825 - 0 3801 16489 275 3 4 205 5 367 888 11 12 294 0 1 309 1 0 39 9 0 205 14 0 29 0 4 284 7 0 7 11 18 89 4 7 23 0 2 12 86 316 14 26 25 62 2 1 309 chain 22638 chr14 107349540 + 98918560 98918911 LTR7 482 - 8 482 117382 166 0 1 15 15 46 25 0 1 56 43 133 31 chain 29175 chr14 107349540 + 98931307 98931617 AluYf4 310 - 0 310 88181 310 chain 8302 chr14 107349540 + 99007539 99007673 L1MB1 2102 - 109 240 169381 43 10 8 70 1 0 10 chain 3366 chr14 107349540 + 99061773 99061812 Tigger4a 237 - 0 39 217758 39 chain 22890 chr14 107349540 + 99080671 99080952 L1PA8 5853 - 248 524 116143 41 1 0 16 4 0 219 chain 99012 chr14 107349540 + 99097357 99098635 HSMAR1 1287 - 1 1286 37026 309 2 1 216 0 4 144 0 3 52 2 1 382 2 0 49 0 4 120 chain 9860 chr14 107349540 + 99100224 99100333 L1PA2 6032 + 5923 6032 161287 109 chain 3035 chr14 107349540 + 99115451 99115488 MER57A1 433 + 0 37 224303 37 chain 64840 chr14 107349540 + 99119472 99120245 LTR17 781 + 0 774 50639 326 0 1 447 chain 25343 chr14 107349540 + 99165432 99165787 THE1A 353 - 0 353 102999 243 6 5 20 12 11 74 chain 24113 chr14 107349540 + 99206640 99206914 AluY 311 + 15 290 109678 163 0 1 111 chain 4752 chr14 107349540 + 99209288 99209355 Tigger5 388 - 129 195 197899 24 1 0 42 chain 25551 chr14 107349540 + 99231208 99231483 AluYb8 318 + 35 310 101982 275 chain 21755 chr14 107349540 + 99243620 99244360 L1PB1 5432 + 5016 5408 121191 83 10 11 8 3 0 20 1 0 9 1 0 10 332 15 47 1 0 18 1 0 44 1 0 14 3 0 7 18 9 16 28 19 24 1 0 21 1 0 13 1 0 4 chain 6374 chr14 107349540 + 99286872 99287003 MLT1D 503 + 413 496 182214 10 48 0 73 chain 18911 chr14 107349540 + 99336008 99336364 L1PB1 5432 + 5109 5430 130336 5 1 0 24 1 0 6 1 0 14 4 0 9 2 0 53 2 1 16 1 0 43 1 0 16 3 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 13205 chr14 107349540 + 99348738 99348946 L1MB3 1562 + 1138 1353 147438 27 10 11 25 1 0 104 9 16 32 chain 29360 chr14 107349540 + 99387560 99387936 THE1C 375 - 0 375 87239 194 0 1 15 0 1 29 13 10 125 chain 4650 chr14 107349540 + 99390240 99390311 MADE1 96 + 0 96 199058 20 1 26 50 chain 16902 chr14 107349540 + 99393072 99393278 L1PA6 6164 - 2 203 135842 43 5 0 158 chain 9185 chr14 107349540 + 99446269 99446394 MSTA 426 + 257 401 164630 16 1 0 23 4 24 81 chain 42476 chr14 107349540 + 99451541 99452021 LTR7 482 + 0 482 66040 419 12 14 49 chain 297526 chr14 107349540 + 99452023 99455572 HERVH-int 3825 + 0 3825 13552 476 0 56 38 1 0 10 1 0 24 29 0 15 1 0 12 12 9 58 0 20 11 2 1 49 1 0 36 0 1 134 0 1 73 1 4 195 15 0 218 0 1 243 4 31 284 0 4 1082 0 3 31 8 218 135 1 0 238 0 3 111 chain 41633 chr14 107349540 + 99458796 99459276 LTR7 482 + 0 482 67114 419 12 14 49 chain 66363 chr14 107349540 + 99510741 99511533 L1PA8A 6298 + 5492 6286 49925 647 0 2 145 chain 16002 chr14 107349540 + 99548747 99549111 THE1B 368 - 4 368 138342 52 18 10 60 126 134 108 chain 21488 chr14 107349540 + 99552335 99552707 THE1C 375 + 0 375 122189 68 3 4 9 1 2 38 3 0 51 3 0 4 0 1 8 54 52 22 0 9 81 1 0 26 chain 21623 chr14 107349540 + 99632372 99632701 THE1B 368 + 0 341 121689 169 1 0 32 26 39 66 14 13 17 0 1 4 chain 94040 chr14 107349540 + 99754173 99755229 L1PA5 6144 + 5075 6135 38339 222 0 4 834 chain 7282 chr14 107349540 + 99776384 99776475 MSTA 426 + 335 426 175568 91 chain 18536 chr14 107349540 + 99795344 99795658 THE1C 375 + 0 318 131403 102 12 14 66 1 2 17 8 12 15 13 9 32 6 7 42 chain 2556 chr14 107349540 + 99829188 99829215 MER20 218 + 50 77 232398 27 chain 9718 chr14 107349540 + 99835531 99835649 MER2 342 - 31 149 161991 118 chain 27654 chr14 107349540 + 99853349 99853721 THE1C 375 - 0 375 94199 53 3 0 28 9 11 144 7 11 128 chain 22567 chr14 107349540 + 99943817 99944100 AluSp 311 + 8 297 117728 162 5 6 19 0 5 97 chain 4490 chr14 107349540 + 99986116 99986304 L1MB5 1630 + 1358 1540 200902 30 7 6 29 97 93 4 1 0 20 chain 9081 chr14 107349540 + 100049353 100049454 HY3 101 + 0 101 165155 101 chain 41338 chr14 107349540 + 100129516 100130029 MER41A 554 - 0 554 67485 6 0 1 86 0 17 220 0 12 64 0 9 35 0 2 102 chain 39551 chr14 107349540 + 100144731 100145278 LTR10E 629 - 83 629 69957 167 1 0 14 2 6 33 5 4 25 2 1 122 17 14 145 0 1 14 chain 6184 chr14 107349540 + 100146882 100146961 MER33 330 - 83 160 183704 6 2 0 71 chain 7593 chr14 107349540 + 100148790 100148888 MER50 708 + 582 686 173593 27 4 10 67 chain 10478 chr14 107349540 + 100156512 100156641 MER85 139 - 0 139 158348 35 0 10 94 chain 3224 chr14 107349540 + 100157715 100157751 MIRb 242 + 97 133 220516 36 chain 25023 chr14 107349540 + 100229278 100229607 THE1B 368 + 0 348 104667 44 0 15 48 0 1 23 17 21 23 1 0 173 chain 36745 chr14 107349540 + 100249337 100249750 L1PA5 6144 - 6 420 73884 153 0 1 260 chain 2511 chr14 107349540 + 100273872 100273960 LTR33 499 - 160 250 232994 19 1 0 5 21 39 7 15 0 20 chain 2973 chr14 107349540 + 100277100 100277149 L1MA7 2200 + 2062 2104 225583 26 7 0 16 chain 8590 chr14 107349540 + 100277742 100277847 Tigger2a 444 - 120 225 167791 105 chain 14483 chr14 107349540 + 100333616 100333813 L1MB2 1706 - 1416 1611 142934 62 2 1 23 1 0 109 chain 7882 chr14 107349540 + 100344413 100344504 MER30 238 + 147 238 171795 91 chain 15059 chr14 107349540 + 100348908 100349125 MER30 238 - 14 238 141142 13 8 16 88 5 0 13 1 5 89 chain 42275 chr14 107349540 + 100367733 100368264 MER41A 554 - 7 554 66301 46 4 8 81 0 4 288 0 1 25 0 1 59 0 6 28 chain 135304 chr14 107349540 + 100368273 100370083 MER41-int 2638 - 2 1859 26954 163 1 33 212 1 3 123 0 1 71 0 2 56 22 3 112 1 0 74 3 1 111 3 1 31 0 1 31 7 15 52 5 7 177 0 3 472 0 6 53 1 15 28 chain 43052 chr14 107349540 + 100372542 100373081 MER41A 554 - 9 554 65352 60 12 17 374 0 1 93 chain 5783 chr14 107349540 + 100415789 100415860 MSTA 426 - 323 394 187335 71 chain 24732 chr14 107349540 + 100418920 100419330 MER4A1 472 - 21 472 106266 47 3 5 37 0 1 73 60 72 82 1 0 80 1 25 4 0 1 7 0 2 15 chain 10042 chr14 107349540 + 100433593 100433776 MER51B 395 + 211 395 160372 25 49 50 109 chain 36155 chr14 107349540 + 100457603 100458037 MER75 514 - 21 460 74706 130 0 1 85 0 4 219 chain 15085 chr14 107349540 + 100466970 100467154 MER4A1 472 - 288 472 141072 184 chain 202851 chr14 107349540 + 100467162 100470202 MER4-int 2692 - 0 2691 19006 19 15 0 110 31 7 195 0 1 31 0 1 40 14 8 9 0 1 95 0 4 38 11 9 126 1 0 109 29 29 191 1 11 149 7 14 38 0 5 113 0 1 27 6 7 136 1 0 160 0 2 87 0 1 193 3 0 5 4 6 51 0 1 49 0 4 484 330 0 7 5 0 19 1 0 12 1 2 49 2 0 23 1 0 12 chain 53471 chr14 107349540 + 100475977 100476702 MER4E 760 - 0 748 56708 8 0 2 12 0 2 61 0 11 112 0 1 169 4 13 108 2 0 81 26 29 13 4 0 33 2 1 46 0 1 39 0 1 5 chain 40166 chr14 107349540 + 100480252 100481008 L1MA3 4352 - 28 651 69086 7 1 0 28 37 29 24 4 0 102 7 0 15 2 0 5 58 25 40 87 7 100 0 1 28 0 1 211 chain 20066 chr14 107349540 + 100491982 100492253 AluSp 311 + 0 262 126931 111 18 9 142 chain 13606 chr14 107349540 + 100546465 100546660 MER30 238 - 0 238 145954 45 0 3 52 3 31 40 0 5 37 5 12 13 chain 13462 chr14 107349540 + 100560260 100560450 MER44A 345 + 152 343 146478 127 6 7 57 chain 144285 chr14 107349540 + 100646600 100648281 SVA_D 2077 + 15 2077 25431 17 6 0 523 0 156 93 0 1 71 0 182 9 0 1 115 50 0 156 2 99 639 chain 1861 chr14 107349540 + 100647458 100647484 SVA_D 2077 + 1029 1056 80159 8 0 1 18 chain 5868 chr14 107349540 + 100674194 100674408 LTR12C 1709 - 672 930 186509 18 69 34 31 0 39 12 41 0 12 0 81 31 chain 23127 chr14 107349540 + 100683178 100683466 AluSc8 310 + 8 302 115015 14 0 6 95 1 0 10 1 2 167 chain 3462 chr14 107349540 + 100685651 100685692 MIRb 242 - 134 175 215948 41 chain 21095 chr14 107349540 + 100725603 100725870 AluSc 308 + 28 293 123566 101 2 1 127 2 1 35 chain 19640 chr14 107349540 + 100732320 100732594 THE1A 353 - 79 353 128281 72 1 0 44 2 0 16 0 4 27 5 4 107 chain 21446 chr14 107349540 + 100738401 100738646 AluY 311 + 50 296 122345 67 0 1 178 chain 3622 chr14 107349540 + 100777494 100777562 MLT1A0 366 + 73 139 213313 7 15 0 31 0 13 15 chain 81113 chr14 107349540 + 100778127 100779095 LTR5_Hs 974 - 0 974 43134 104 2 0 9 0 1 24 10 17 819 chain 25400 chr14 107349540 + 100805651 100805957 AluY 311 + 5 310 102682 117 0 1 9 0 1 49 1 0 119 2 0 9 chain 12733 chr14 107349540 + 100809067 100809226 L1PA8 5853 - 0 157 149318 93 1 0 19 2 1 44 chain 145495 chr14 107349540 + 100810398 100812000 SVA_D 2077 + 15 2064 25255 6 1 0 6 1 0 780 0 1 95 0 438 388 0 10 325 chain 5693 chr14 107349540 + 100853960 100854031 MIR 256 - 118 189 188171 71 chain 6446 chr14 107349540 + 100879714 100880100 MADE1 96 + 1 96 181664 38 297 6 51 chain 38604 chr14 107349540 + 100974300 100974776 L1PA16 3655 + 1283 1758 71289 431 1 0 44 chain 2976 chr14 107349540 + 100984630 100984665 L1MEf 1413 - 503 538 225498 35 chain 11796 chr14 107349540 + 101063575 101063720 LTR44 473 + 326 471 153059 145 chain 3516 chr14 107349540 + 101087969 101088037 L1MA3 4352 - 20 84 215123 4 1 0 11 1 0 29 1 0 5 4 3 12 chain 75817 chr14 107349540 + 101098070 101098965 L1PA5 6144 + 5252 6144 45588 42 4 0 213 5 4 108 6 7 430 0 1 87 chain 6201 chr14 107349540 + 101128507 101128582 MER33 330 + 163 238 183570 75 chain 29482 chr14 107349540 + 101165913 101166228 AluYb8 318 + 0 315 86701 315 chain 3848 chr14 107349540 + 101208493 101208537 MER20 218 + 23 67 209664 44 chain 31732 chr14 107349540 + 101229550 101229955 MER1A 529 - 0 407 81274 64 6 8 335 chain 15972 chr14 107349540 + 101230163 101230467 Tigger2 2703 - 45 358 138449 28 2 1 9 0 30 10 36 10 86 1 0 50 0 1 6 27 33 49 chain 3652 chr14 107349540 + 101280402 101280528 MIR 256 + 105 234 212770 28 29 37 16 3 0 6 23 21 21 chain 100633 chr14 107349540 + 101388059 101389532 L1PB2 3958 - 120 1560 36599 63 1 0 26 6 4 57 8 7 64 1 0 58 17 16 92 3 0 11 3 1 55 23 9 12 1 0 46 0 1 9 2 0 219 1 0 37 2 0 127 7 6 207 0 1 214 30 27 71 chain 23454 chr14 107349540 + 101426260 101426540 AluSp 311 + 20 311 113353 14 0 11 266 chain 47837 chr14 107349540 + 101561235 101561780 LTR6B 557 + 0 557 60600 91 0 4 98 1 11 71 2 0 282 chain 17272 chr14 107349540 + 101572337 101572692 THE1B 368 + 0 358 134858 108 48 49 20 42 37 14 7 15 60 2 0 7 1 2 46 chain 112746 chr14 107349540 + 101608808 101610111 L1PA7 6471 - 3 1306 33397 847 2 1 382 0 1 72 chain 126718 chr14 107349540 + 101610111 101611665 L1PA7 6471 + 3612 5179 28875 94 0 1 5 9 4 361 0 1 33 9 0 200 0 3 211 0 4 53 0 3 84 0 8 126 0 2 10 1 5 129 1 0 223 0 2 5 chain 33978 chr14 107349540 + 101626539 101626946 MER48 407 + 0 407 77645 407 chain 23039 chr14 107349540 + 101635281 101635552 AluSc 308 + 8 278 115451 17 1 0 253 chain 3876 chr14 107349540 + 101639126 101639169 MSTA 426 - 340 383 209211 43 chain 133211 chr14 107349540 + 101671109 101673856 L1PA7 6471 - 1 2763 27390 12 0 6 33 0 1 4 1 0 644 11 7 61 0 2 79 1 0 60 74 8 66 1 2 203 0 1 4 5 4 324 7 5 80 21 5 17 583 675 39 12 13 109 29 29 51 197 199 19 chain 5583 chr14 107349540 + 101681389 101681474 MLT1A 405 + 67 162 189246 35 4 14 9 1 0 6 0 1 30 chain 557600 chr14 107349540 + 101732536 101738564 L1PA2 6032 + 2 6031 544 481 1 2 5546 chain 116148 chr14 107349540 + 101761321 101762884 THE1B-int 1605 - 12 1605 32398 576 27 28 292 4 9 12 9 8 164 25 25 28 17 42 409 chain 50158 chr14 107349540 + 101766044 101766669 PRIMA4_LTR 623 + 0 614 58901 80 0 1 179 1 3 121 14 0 230 chain 9871 chr14 107349540 + 101771464 101771588 MER4A1 472 - 0 124 161230 124 chain 28505 chr14 107349540 + 101771597 101771989 LTR7 482 - 7 482 91169 169 11 43 26 12 13 73 0 50 101 chain 208084 chr14 107349540 + 101774356 101777183 HERVH-int 3825 - 825 3825 18632 477 23 26 403 0 5 81 6 8 15 0 35 235 0 27 227 0 1 29 9 0 205 15 0 448 1 0 22 16 17 21 148 274 28 15 14 69 1 0 333 chain 21029 chr14 107349540 + 101777200 101777525 LTR7 482 - 15 423 123813 161 18 19 26 5 37 44 1 52 13 15 14 42 chain 31976 chr14 107349540 + 101789974 101790434 LTR10A 586 + 115 564 80893 25 4 8 118 36 7 25 0 1 24 1 13 181 0 1 46 chain 6517 chr14 107349540 + 101841590 101841672 MER53 195 + 109 190 181104 16 1 0 65 chain 22607 chr14 107349540 + 101843966 101844256 AluSp 311 + 15 302 117557 11 1 0 106 13 11 159 chain 89930 chr14 107349540 + 101852448 101854009 L1PA8 5853 - 18 1211 39674 75 1 0 14 1 0 56 4 3 7 1 0 72 2 0 12 0 1 30 2 1 112 1 0 195 0 4 79 12 4 161 0 2 65 1 2 84 0 1 30 0 1 98 0 1 1 7 0 5 302 0 45 55 1 31 chain 5568 chr14 107349540 + 101870982 101871046 MER66B 489 - 425 489 189400 64 chain 92325 chr14 107349540 + 101895158 101896623 L1PA8A 6298 - 8 1176 38870 52 0 1 140 1 3 156 1 0 63 303 0 151 5 4 225 1 6 173 4 3 4 0 1 186 chain 22519 chr14 107349540 + 101918331 101918598 AluY 311 + 34 302 117940 98 0 1 169 chain 30090 chr14 107349540 + 101990880 101991202 AluYb8 318 - 0 318 84530 186 4 0 132 chain 5254 chr14 107349540 + 102034955 102035035 MER53 195 - 12 87 192475 51 7 2 22 chain 5524 chr14 107349540 + 102035657 102035722 L1MA8 2339 + 1257 1322 189796 65 chain 34075 chr14 107349540 + 102063487 102064385 L1PB1 5432 - 14 571 77503 27 1 0 21 1 0 24 2 0 19 3 0 5 0 2 23 14 1 15 314 0 44 1 0 14 2 1 55 2 0 8 2 0 3 2 0 10 1 0 12 1 0 19 5 0 8 1 4 64 10 11 23 0 1 6 8 9 128 chain 9377 chr14 107349540 + 102076185 102076369 L1MA8 2339 + 2101 2261 163663 16 18 4 33 9 6 36 6 0 61 1 0 4 chain 13343 chr14 107349540 + 102114374 102114633 L1PB1 5432 + 5167 5404 146922 50 8 7 13 1 0 43 1 0 12 29 17 18 13 10 9 2 0 24 1 0 21 1 0 13 chain 4462 chr14 107349540 + 102140568 102140825 MER4-int 2692 - 0 258 36820 15 0 1 242 chain 170448 chr14 107349540 + 102140825 102142692 L1PA3long 6157 + 4285 6157 21997 356 1 0 666 1 0 705 0 7 138 chain 60431 chr14 107349540 + 102143010 102143876 PABL_A-int 1935 - 41 930 52620 5 1 0 9 2 0 9 6 1 15 1 0 15 7 6 107 1 0 119 1 0 24 0 1 40 0 5 18 2 0 5 1 0 167 0 6 20 0 1 6 0 4 31 1 2 9 0 5 58 0 5 61 7 17 118 chain 26928 chr14 107349540 + 102144767 102146318 MER4-int 2692 - 1441 2691 36820 51 0 3 278 6 8 157 5 9 13 14 7 91 0 2 33 7 8 16 0 1 12 0 9 111 9 5 73 1 2 23 0 1 18 0 2 77 307 0 116 5 1 25 1 0 56 1 0 7 2 0 25 1 0 10 chain 23980 chr14 107349540 + 102147082 102147418 L1PA8 5853 - 0 331 110446 5 0 1 46 0 1 40 1 0 19 3 2 51 2 1 8 1 0 72 2 0 40 4 3 42 chain 28382 chr14 107349540 + 102147512 102147818 AluYa5 310 - 5 310 91656 212 1 0 93 chain 16272 chr14 107349540 + 102151674 102151858 MER4A1 472 - 287 472 137544 163 0 1 21 chain 4584 chr14 107349540 + 102155980 102156121 LTR12C 1709 + 821 883 199814 16 79 0 46 chain 142350 chr14 107349540 + 102165323 102167925 L1MA3 4352 + 2121 4352 25753 14 3 4 174 1 0 8 13 13 178 5 0 37 7 15 19 1 0 141 0 1 36 37 29 51 8 0 199 15 17 155 1 0 24 17 4 147 2 0 10 6 7 16 0 1 167 9 14 42 362 36 103 1 3 35 5 9 13 5 9 199 0 1 39 50 28 63 6 5 43 10 5 19 6 4 24 1 0 6 1 0 28 1 0 4 13 10 22 chain 30738 chr14 107349540 + 102168558 102168931 THE1B-int 1605 + 1037 1416 82973 156 0 6 217 chain 27173 chr14 107349540 + 102168938 102169301 THE1B 368 + 0 365 95685 15 2 0 21 0 5 62 0 1 24 0 1 39 1 0 24 2 0 173 chain 4189 chr14 107349540 + 102182013 102182061 MSTA 426 + 51 99 204708 48 chain 4555 chr14 107349540 + 102184744 102184825 MLT1B 390 + 291 374 200168 30 4 5 30 6 7 11 chain 4732 chr14 107349540 + 102191624 102191677 MLT2A2 560 + 507 560 198148 53 chain 3908 chr14 107349540 + 102193131 102193177 MER63A 208 + 87 133 208744 46 chain 27955 chr14 107349540 + 102194367 102194752 THE1C 375 + 0 373 93147 124 3 0 56 0 2 8 2 0 28 9 1 131 8 7 16 chain 120377 chr14 107349540 + 102206778 102208367 THE1D-int 1627 - 0 1587 30913 9 0 1 66 1 0 75 12 5 500 0 1 35 0 3 95 0 1 61 32 29 65 11 12 150 0 3 183 1 0 293 chain 24525 chr14 107349540 + 102208729 102209105 THE1D 372 - 0 372 107412 32 1 0 115 54 47 6 0 4 168 chain 520732 chr14 107349540 + 102210593 102216721 L1PA6 6164 - 19 6164 5079 352 0 2 42 0 1 190 0 1 119 0 1 121 0 3 175 0 1 36 1 4 214 1 2 374 6 7 241 4 3 550 3 4 320 0 23 169 0 1 76 0 3 64 0 1 370 0 1 216 2 0 9 0 4 9 5 0 111 1 0 878 0 1 377 1 2 532 5 1 68 28 7 394 1 2 63 chain 35651 chr14 107349540 + 102220254 102220745 LTR2C 499 + 9 499 75334 18 25 18 5 0 3 374 8 11 61 chain 3125 chr14 107349540 + 102238308 102238342 MER3 215 - 107 141 222439 34 chain 8011 chr14 107349540 + 102269563 102269668 U6 107 + 0 107 170983 47 0 3 44 1 0 13 chain 18892 chr14 107349540 + 102270081 102270405 L1MA1 4479 + 3885 4190 130390 62 9 5 120 7 6 28 3 1 35 1 0 9 1 0 12 23 13 14 chain 4413 chr14 107349540 + 102271719 102271768 L1MB3 1562 + 986 1035 201758 49 chain 34171 chr14 107349540 + 102272442 102272893 L1PA8 5853 - 0 444 77390 93 1 0 19 2 1 52 1 0 9 1 0 56 17 15 44 1 0 155 chain 7259 chr14 107349540 + 102294512 102294704 L1MB5 1630 + 1410 1601 175712 61 1 0 3 7 0 8 71 78 41 chain 40560 chr14 107349540 + 102407768 102408235 L1PA5 6144 - 0 467 68494 467 chain 41349 chr14 107349540 + 102408235 102408693 L1P1 4361 + 3236 3695 67472 446 0 1 12 chain 8449 chr14 107349540 + 102410080 102410177 L1P3 4156 + 3737 3834 168568 97 chain 15482 chr14 107349540 + 102448307 102448648 MER1A 529 + 0 408 139955 18 69 117 21 18 19 101 5 4 6 5 0 75 1 0 4 1 26 17 chain 26770 chr14 107349540 + 102466910 102467209 AluSp 311 - 11 311 97086 250 0 1 49 chain 24182 chr14 107349540 + 102489606 102489900 AluSp 311 + 1 296 109311 54 1 2 239 chain 31321 chr14 107349540 + 102522256 102523159 MER4A1 472 - 0 464 81954 44 5 6 52 478 8 97 11 39 80 0 1 131 0 1 5 chain 6067 chr14 107349540 + 102524153 102524220 MER4A1 472 + 24 91 184689 67 chain 22496 chr14 107349540 + 102527809 102528080 AluY 311 + 27 299 118042 105 0 1 133 0 2 15 2 0 16 chain 48727 chr14 107349540 + 102531062 102531616 LTR6B 557 + 0 557 59931 91 0 4 306 1 0 156 chain 12852 chr14 107349540 + 102576581 102576739 THE1B-int 1605 + 273 426 148837 30 5 0 123 chain 4212 chr14 107349540 + 102597019 102597071 L1MB7 1623 - 846 898 204397 52 chain 142203 chr14 107349540 + 102600761 102602412 LTR12C 1709 - 1 1709 25781 480 0 4 113 1 0 274 1 0 138 0 54 198 0 1 14 1 0 90 0 1 341 chain 23969 chr14 107349540 + 102602942 102603252 AluSq10 312 + 0 305 110522 125 1 0 34 0 1 118 0 1 16 6 0 10 chain 102654 chr14 107349540 + 102638249 102639432 SVA_D 2077 - 0 1510 36091 7 2 0 61 1 8 240 1 0 322 0 226 159 0 1 9 0 53 30 0 1 10 12 54 329 chain 143941 chr14 107349540 + 102639831 102643076 L1PB1 5432 - 10 2538 25488 18 1 0 12 1 0 22 3 2 22 2 0 14 1 0 5 3 1 15 9 0 15 4 1 11 6 5 43 1 0 15 2 1 38 305 0 12 3 1 10 38 61 13 1 4 254 332 23 174 14 5 82 7 5 8 0 4 75 0 6 101 0 2 312 6 4 178 0 1 18 0 4 104 2 0 170 9 7 65 1 0 53 457 365 47 11 0 19 0 1 8 1 0 92 chain 22800 chr14 107349540 + 102694751 102695055 AluSp 311 + 0 303 116576 79 2 1 52 3 0 41 2 3 86 4 6 35 chain 23904 chr14 107349540 + 102700182 102700506 LTR21A 479 + 180 479 110893 77 25 0 222 chain 9406 chr14 107349540 + 102703838 102704395 HERVFH21-int 991 + 490 860 163530 42 1 0 3 1 0 17 330 174 22 36 28 10 19 3 21 4 0 8 1 0 42 chain 229863 chr14 107349540 + 102707166 102710207 HERVH-int 3825 + 778 3825 17313 130 18 26 208 44 50 26 8 0 6 7 0 107 9 7 92 9 0 10 1 5 157 0 1 4 1 0 122 0 1 300 1 0 60 0 5 86 0 13 14 0 3 197 0 1 4 6 5 69 20 21 281 11 0 227 1 0 76 0 3 80 0 2 125 1 0 523 chain 34976 chr14 107349540 + 102714491 102715289 LTR21A 479 + 0 479 76220 25 1 0 31 4 1 6 1 0 194 25 0 44 313 0 98 3 27 53 chain 26359 chr14 107349540 + 102726233 102726532 AluSp 311 + 1 301 98574 140 0 1 159 chain 21782 chr14 107349540 + 102742539 102742816 AluY 311 + 0 285 121095 123 1 0 3 3 0 112 0 12 35 chain 29103 chr14 107349540 + 102754157 102754470 AluYb8 318 - 7 318 88539 97 2 0 214 chain 23843 chr14 107349540 + 102756504 102756787 AluSp 311 + 10 292 111228 167 1 0 115 chain 22175 chr14 107349540 + 102764512 102764802 LTR12C 1709 + 789 1203 119472 29 0 40 228 6 90 27 chain 5406 chr14 107349540 + 102764859 102764921 LTR12C 1709 + 656 718 190933 62 chain 3729 chr14 107349540 + 102783428 102783467 tRNA-Ile-ATT 40 + 0 39 211496 39 chain 5564 chr14 107349540 + 102825169 102825240 U13_ 108 - 37 108 189435 71 chain 4969 chr14 107349540 + 102840588 102840647 U3 216 - 148 207 195482 59 chain 18310 chr14 107349540 + 102876624 102876817 SVA_F 1814 + 1621 1814 132050 193 chain 33682 chr14 107349540 + 102877625 102878037 LTR7 482 + 0 440 78123 51 4 0 202 12 43 9 0 1 134 chain 9616 chr14 107349540 + 102889443 102889926 MER30 238 + 57 238 162504 33 0 5 11 343 33 13 0 6 41 3 0 39 chain 25550 chr14 107349540 + 102960881 102961179 AluSp 311 + 0 300 101986 40 1 0 51 0 3 206 chain 3741 chr14 107349540 + 102998692 102998737 MLT1J 494 - 348 393 211314 45 chain 28769 chr14 107349540 + 103000000 103000360 MER41A 554 - 175 534 90026 162 3 2 195 chain 23502 chr14 107349540 + 103000493 103000774 AluY 311 + 20 302 113120 111 3 4 167 chain 30001 chr14 107349540 + 103017374 103017744 MER41A 554 + 0 371 84809 69 2 1 35 0 2 264 chain 18238 chr14 107349540 + 103020196 103020494 AluSx 319 + 10 304 132240 12 4 0 163 55 53 37 0 2 27 chain 18949 chr14 107349540 + 103049244 103049487 7SLRNA 320 - 41 281 130230 91 5 2 147 chain 26765 chr14 107349540 + 103079772 103080056 AluYd8 298 - 14 298 97109 284 chain 11440 chr14 107349540 + 103117450 103117573 MER9a2 513 - 0 123 154534 123 chain 55647 chr14 107349540 + 103142386 103143014 SVA_E 1901 - 339 1097 55339 457 3 139 39 4 0 110 1 0 5 1 0 8 chain 35548 chr14 107349540 + 103143083 103143539 SVA_F 1814 - 523 965 75477 17 1 0 16 0 1 80 0 1 181 0 1 32 46 33 4 1 0 45 1 0 25 1 0 6 chain 89855 chr14 107349540 + 103143561 103144580 SVA_D 2077 - 518 2065 39700 17 1 0 102 0 532 699 3 1 152 7 0 15 0 6 23 chain 31097 chr14 107349540 + 103185602 103185957 L1PA5 6144 - 12 369 82346 88 0 3 82 1 0 184 chain 3174 chr14 107349540 + 103260226 103260259 MLT1H1 527 - 104 137 221468 33 chain 10299 chr14 107349540 + 103261982 103262186 MER21A 919 + 33 292 159138 48 7 60 34 48 50 67 chain 25278 chr14 107349540 + 103267233 103267502 AluYd8 298 + 0 269 103329 269 chain 23307 chr14 107349540 + 103269176 103269504 THE1C 375 - 34 364 114167 20 6 0 94 0 3 37 0 1 47 26 30 98 chain 26870 chr14 107349540 + 103278974 103279267 AluYk4 311 + 0 293 96745 293 chain 11367 chr14 107349540 + 103279611 103279754 L1MA5A 2387 - 652 801 154828 105 0 3 19 0 3 19 chain 8556 chr14 107349540 + 103286092 103286286 MER46C 351 - 127 351 167987 44 2 0 26 5 7 14 45 77 15 2 0 41 chain 25512 chr14 107349540 + 103289060 103289361 AluSp 311 + 0 300 102173 84 1 0 216 chain 5909 chr14 107349540 + 103290352 103290457 L1MB8 1703 - 341 450 186096 25 13 12 40 1 6 26 chain 176129 chr14 107349540 + 103323065 103325895 MER41-int 2638 - 2 2526 21343 80 0 1 101 1 2 203 2 0 147 1 0 52 0 1 19 3 0 156 10 8 14 2 0 38 1 0 13 0 1 132 1 0 166 0 3 114 0 5 29 0 3 25 6 4 12 9 13 75 318 6 61 11 8 36 8 13 84 1 4 185 1 15 78 4 6 45 1 0 68 12 15 102 0 4 30 2 1 5 8 0 21 3 0 5 0 6 166 6 2 5 1 0 16 7 5 12 5 2 30 28 18 53 chain 8826 chr14 107349540 + 103332192 103332300 U6 107 + 0 107 166514 94 1 0 13 chain 39271 chr14 107349540 + 103332300 103332764 L1PA7 6471 + 5995 6469 70366 321 0 13 132 3 0 8 chain 25346 chr14 107349540 + 103462404 103462687 AluY 311 + 10 293 102978 283 chain 24126 chr14 107349540 + 103492928 103493222 AluY 311 + 10 298 109606 115 6 1 6 0 1 150 2 0 15 chain 23711 chr14 107349540 + 103495612 103495902 AluY 311 + 16 303 111970 107 1 0 162 2 0 18 chain 26747 chr14 107349540 + 103562757 103563071 LTR17 781 - 464 778 97173 314 chain 27866 chr14 107349540 + 103581437 103581797 MER51A 677 - 16 369 93473 70 8 0 51 1 2 230 chain 34725 chr14 107349540 + 103610510 103611000 LTR3B_ 500 + 6 500 76581 72 1 0 72 11 12 64 0 1 76 0 1 35 1 0 8 7 8 46 5 7 92 chain 210838 chr14 107349540 + 103632157 103635718 MER52-int 3354 + 139 3300 18439 38 1 0 37 1 0 26 24 20 17 11 7 15 7 5 11 2 1 20 1 0 22 1 0 31 1 0 22 3 0 27 1 0 61 2 1 14 2 0 9 2 0 8 10 7 66 1 0 117 3 1 77 3 0 14 2 1 10 14 8 164 3 1 54 1 0 86 0 1 39 0 17 92 2 0 410 10 8 95 8 9 5 1 0 151 332 6 37 2 8 304 13 18 69 8 15 335 39 16 8 1 0 48 3 2 9 2 1 39 1 0 4 1 0 13 1 0 32 3 1 13 1 0 42 4 2 31 1 0 31 2 0 9 2 0 11 2 0 4 1 0 33 1 0 14 2 0 40 3 2 14 12 8 6 2 0 27 1 0 5 2 1 6 1 0 17 1 0 32 1 0 6 1 0 7 3 0 3 1 0 7 chain 65839 chr14 107349540 + 103637134 103638107 HERVK14-int 1672 + 6 969 50173 24 1 0 10 1 0 28 35 34 204 6 5 17 13 11 128 9 8 93 1 0 40 6 5 206 7 6 144 chain 46940 chr14 107349540 + 103642320 103643243 LTR71B 605 + 0 605 61269 102 10 25 15 5 0 391 0 1 2 329 0 69 chain 21505 chr14 107349540 + 103656538 103656891 THE1D 372 + 16 372 122127 35 9 0 16 11 12 49 0 4 34 23 31 6 1 0 20 2 1 127 2 3 18 chain 73754 chr14 107349540 + 103659045 103660022 MER11A 1151 - 5 1151 46646 158 6 7 60 0 36 23 8 41 139 4 7 131 6 7 96 0 1 146 4 0 66 1 0 50 0 99 79 chain 46930 chr14 107349540 + 103672829 103673478 PABL_A 660 + 0 660 61283 127 1 0 176 0 1 101 11 22 81 0 2 39 1 0 12 9 8 91 chain 45283 chr14 107349540 + 103700334 103700847 MER9a2 513 + 0 513 62738 513 chain 251303 chr14 107349540 + 103702175 103705304 HERVK9-int 4720 + 36 4720 16155 13 8 5 4 1 0 66 2 1 7 1 0 30 1 0 228 7 8 585 3 1 260 9 10 242 0 924 231 51 689 1380 chain 43116 chr14 107349540 + 103705304 103705822 MER9a2 513 + 0 513 65273 12 10 4 26 0 1 470 chain 6964 chr14 107349540 + 103707585 103707677 LTR23 429 - 15 106 177720 71 1 0 20 chain 42746 chr14 107349540 + 103708682 103709255 MER4E 760 + 1 578 65727 22 0 1 127 13 15 87 0 1 60 0 1 54 0 2 75 1 0 83 11 9 40 chain 7642 chr14 107349540 + 103709276 103709394 LTR9B 643 - 84 198 173271 32 6 0 7 5 8 36 1 0 31 chain 24878 chr14 107349540 + 103711865 103712218 L1PA8 5853 - 0 346 105467 52 0 1 40 2 1 18 2 1 52 2 1 5 2 0 74 2 0 43 2 1 57 chain 6471 chr14 107349540 + 103713262 103713340 MER51B 395 + 309 387 181472 78 chain 46365 chr14 107349540 + 103722300 103723220 LTR66 600 - 0 600 61715 68 13 17 100 324 0 415 chain 5802 chr14 107349540 + 103727249 103727348 HERVL66-int 1251 + 162 255 187135 19 16 10 64 chain 27160 chr14 107349540 + 103733997 103734414 MSTA-int 1630 - 0 439 95724 9 1 2 64 4 5 35 1 0 98 39 40 135 2 22 29 chain 3399 chr14 107349540 + 103766904 103766945 MADE1 96 - 55 96 217086 41 chain 26385 chr14 107349540 + 103779601 103779910 AluY 311 + 0 303 98467 130 6 0 173 chain 5227 chr14 107349540 + 103783283 103783342 5S 121 - 31 90 192752 59 chain 25315 chr14 107349540 + 103791771 103792073 AluSq 315 + 5 309 103144 128 0 2 174 chain 29523 chr14 107349540 + 103820141 103820451 AluYg6 310 + 0 310 86554 310 chain 7631 chr14 107349540 + 103829757 103829854 L1M4c 1769 - 926 1023 173342 97 chain 23001 chr14 107349540 + 103832352 103832638 AluSc 308 + 0 280 115618 17 9 3 260 chain 7181 chr14 107349540 + 103834356 103834453 MSTD 398 + 288 386 176201 54 1 2 42 chain 24241 chr14 107349540 + 103850151 103850436 AluYg6 310 + 0 282 108990 131 3 0 151 chain 25508 chr14 107349540 + 103865768 103866064 AluYc 301 + 4 299 102185 245 1 0 50 chain 17969 chr14 107349540 + 103875552 103875784 L1PA7 6471 + 6227 6470 132940 19 0 1 65 0 2 93 4 8 40 0 4 11 chain 5691 chr14 107349540 + 103889207 103889442 MLT1B 390 + 25 334 188193 32 0 10 29 142 206 32 chain 34283 chr14 107349540 + 103893912 103894372 MER41B 635 - 179 635 77235 103 11 9 212 10 8 124 chain 10177 chr14 107349540 + 103918733 103919224 L1MB3 1562 - 145 327 159733 60 348 39 83 chain 20220 chr14 107349540 + 103938723 103939004 AluY 311 + 25 302 126473 106 27 24 106 2 1 40 chain 22959 chr14 107349540 + 103982362 103982660 AluSp 311 + 0 296 115810 43 1 0 150 5 4 99 chain 18468 chr14 107349540 + 104037504 104037721 AluY 311 + 82 298 131586 36 1 0 180 chain 25794 chr14 107349540 + 104038186 104038484 AluY 311 + 4 304 100896 128 0 1 142 0 1 28 chain 12660 chr14 107349540 + 104053383 104053555 L1MB7 1623 - 1454 1623 149602 66 0 1 60 4 0 42 chain 22931 chr14 107349540 + 104055970 104056262 AluY 311 + 0 294 115954 46 12 20 52 7 0 14 0 1 161 chain 9154 chr14 107349540 + 104066934 104067071 MER84 505 - 368 502 164791 99 15 12 23 chain 4360 chr14 107349540 + 104108584 104108650 MLT1A0 366 - 227 296 202450 13 3 4 9 0 2 41 chain 16926 chr14 107349540 + 104109789 104109982 MER4E1 777 - 5 198 135782 193 chain 3538 chr14 107349540 + 104115570 104115607 FLAM_A 137 + 83 120 214748 37 chain 22867 chr14 107349540 + 104125303 104125591 AluSq10 312 - 3 302 116249 17 2 0 202 0 13 67 chain 23696 chr14 107349540 + 104167932 104168220 AluY 311 + 3 294 112050 126 1 2 144 0 2 17 chain 13591 chr14 107349540 + 104213872 104214147 L1PB1 5432 - 5 264 146009 5 2 0 18 1 0 13 1 0 21 1 0 8 32 35 30 12 1 13 7 6 41 1 0 15 2 1 52 chain 15277 chr14 107349540 + 104228759 104228932 L1PA4 6152 + 5965 6138 140548 173 chain 3961 chr14 107349540 + 104239323 104239371 L1ME1 1623 - 627 675 207967 48 chain 23268 chr14 107349540 + 104267182 104267474 AluSp 311 - 14 299 114348 8 7 0 277 chain 11410 chr14 107349540 + 104274687 104274912 MER30 238 - 0 238 154645 40 0 4 47 41 49 62 18 19 17 chain 6131 chr14 107349540 + 104324773 104324870 MER5A 189 - 91 189 184160 18 11 12 68 chain 26435 chr14 107349540 + 104325331 104325632 AluSp 311 - 0 301 98285 301 chain 25753 chr14 107349540 + 104326986 104327293 AluYf4 310 - 13 310 101072 68 11 0 21 1 2 206 chain 18121 chr14 107349540 + 104331641 104331872 L1PA8 5853 + 5514 5739 132536 50 1 0 45 2 0 68 3 2 9 1 0 10 1 0 41 chain 22457 chr14 107349540 + 104389565 104389861 AluY 311 + 0 311 118213 64 3 17 105 3 4 121 chain 4409 chr14 107349540 + 104396156 104396224 L1MC1 2226 - 404 507 201817 19 0 34 27 4 5 18 chain 22836 chr14 107349540 + 104430856 104431149 AluSc 308 - 12 298 116412 13 9 0 130 0 2 141 chain 84001 chr14 107349540 + 104446446 104447468 LTR13 1007 - 0 1007 41903 31 3 1 159 0 1 127 2 0 302 4 5 16 11 0 292 2 0 73 chain 23492 chr14 107349540 + 104448960 104449259 AluSp 311 + 0 303 113163 91 0 4 111 0 3 5 3 0 89 chain 118741 chr14 107349540 + 104450037 104451560 THE1B-int 1605 + 0 1597 31518 78 1 0 227 0 1 124 0 25 378 5 3 5 0 2 146 7 8 30 5 6 239 0 3 158 0 46 54 1 0 25 1 0 39 chain 8177 chr14 107349540 + 104468683 104469050 MER57B2 428 - 15 415 170089 28 82 90 56 157 182 44 chain 26715 chr14 107349540 + 104497033 104497325 L1PA3long 6157 + 5865 6157 97274 292 chain 22313 chr14 107349540 + 104505304 104505658 THE1C 375 - 0 361 118860 25 1 0 163 1 0 5 4 0 64 36 37 28 4 16 23 chain 21111 chr14 107349540 + 104531561 104531821 AluSp 311 + 53 308 123522 182 2 0 67 3 0 6 chain 3091 chr14 107349540 + 104541710 104541751 Tigger3a 397 - 189 238 223088 29 0 8 12 chain 4857 chr14 107349540 + 104545926 104546000 L1MB2 1706 - 215 304 196701 40 4 19 30 chain 111643 chr14 107349540 + 104699899 104701392 THE1C-int 1605 + 16 1599 33761 38 9 11 45 0 54 97 4 7 177 9 16 79 0 4 197 3 12 348 8 3 15 0 2 10 2 0 5 4 18 171 0 1 231 1 2 40 chain 21812 chr14 107349540 + 104734959 104735192 L1HS 6032 - 2 235 120967 233 chain 17179 chr14 107349540 + 104739260 104739576 THE1B 368 + 0 349 135091 103 31 32 42 48 80 92 chain 5505 chr14 107349540 + 104867307 104867374 U6 107 - 29 96 189985 67 chain 36411 chr14 107349540 + 104867445 104867919 MSTA-int 1630 + 34 502 74354 436 6 0 32 chain 56916 chr14 107349540 + 104874169 104874941 MER4E1 777 - 10 777 54584 223 14 11 70 0 4 100 6 8 104 1 0 129 13 9 65 4 0 19 0 1 24 chain 373582 chr14 107349540 + 104878382 104882563 L1PA5 6144 - 0 4206 10973 868 1 5 6 0 12 383 0 1 55 0 9 1609 1 0 1258 chain 3721 chr14 107349540 + 104886376 104886417 MER1B 344 + 37 78 211623 41 chain 23820 chr14 107349540 + 104886963 104887367 MER1A 529 + 0 444 111361 83 107 147 214 chain 4975 chr14 107349540 + 104918242 104918371 THE1D 372 - 250 371 195422 28 10 14 6 3 0 17 30 21 35 chain 91486 chr14 107349540 + 104948076 104949241 MER11A 1151 - 0 1151 39140 170 1 8 14 1 0 4 0 1 92 3 0 48 6 0 7 0 5 113 0 1 13 1 0 196 10 0 89 1 2 86 1 0 6 0 2 66 1 0 16 0 3 10 2 0 21 8 0 54 1 0 124 chain 26387 chr14 107349540 + 104965480 104965841 THE1D 372 - 0 372 98462 35 2 1 60 3 0 83 0 3 78 0 1 10 0 1 25 4 14 61 chain 28324 chr14 107349540 + 105005522 105005823 AluYk11 308 - 7 308 91851 301 chain 18880 chr14 107349540 + 105073471 105074306 MLT2D 439 - 0 436 130425 43 3 20 104 77 67 11 2 0 32 415 5 14 0 3 18 5 6 13 8 9 41 14 15 35 chain 48563 chr14 107349540 + 105078921 105079521 L1PA8 5853 - 0 654 60068 92 2 1 16 1 0 55 1 0 10 2 1 68 2 0 14 0 59 266 0 1 71 chain 2899 chr14 107349540 + 105088706 105088743 MER41C 542 + 18 57 227054 28 0 2 9 chain 39018 chr14 107349540 + 105088761 105089270 MER41C 542 + 0 532 70721 46 0 2 263 7 28 193 chain 31870 chr14 107349540 + 105113698 105114206 LTR10E 629 - 95 629 81065 158 7 6 46 1 0 24 0 26 43 63 0 12 1 61 99 0 4 44 0 1 10 chain 4776 chr14 107349540 + 105123220 105123388 MLT1B 390 + 120 326 197626 25 97 135 46 chain 24771 chr14 107349540 + 105140236 105140592 THE1D 372 + 6 372 106055 89 6 7 58 25 34 178 chain 3885 chr14 107349540 + 105141628 105141679 MER53 195 - 101 152 209102 51 chain 24800 chr14 107349540 + 105217297 105217618 LTR12C 1709 - 723 1059 105893 54 0 1 4 3 18 72 1 0 187 chain 44633 chr14 107349540 + 105233161 105233739 LTR71B 605 - 0 582 63445 49 8 0 378 0 3 25 29 38 89 chain 23062 chr14 107349540 + 105290150 105290494 THE1B 368 - 0 368 115343 125 7 15 14 8 13 9 6 0 18 1 0 85 0 3 27 0 15 44 chain 240001 chr14 107349540 + 105303288 105306027 L1PA6 6164 - 3 2743 16778 135 9 6 2252 0 7 63 3 0 277 chain 24587 chr14 107349540 + 105319078 105319369 AluSp 311 - 19 310 107051 291 chain 49165 chr14 107349540 + 105385286 105385885 LTR71B 605 + 1 605 59621 125 24 29 450 chain 27081 chr14 107349540 + 105427569 105427864 AluYf4 310 + 0 295 95997 295 chain 6888 chr14 107349540 + 105466476 105466563 L1MA8 2339 + 1378 1465 178286 87 chain 24341 chr14 107349540 + 105469335 105469615 AluSg7 307 - 22 303 108414 153 0 1 127 chain 41150 chr14 107349540 + 105498789 105499340 MER41A 554 + 0 554 67717 118 1 0 43 3 0 175 5 6 103 21 26 15 0 1 67 chain 40821 chr14 107349540 + 105504758 105505283 LTR2C 499 + 6 499 68143 166 49 16 247 0 1 63 chain 14533 chr14 107349540 + 105506836 105507019 MER4E1 777 - 9 193 142794 147 4 5 32 chain 23267 chr14 107349540 + 105534809 105535089 AluSp 311 - 10 290 114351 280 chain 130229 chr14 107349540 + 105544940 105546382 SVA_F 1814 - 0 1814 28038 10 0 6 366 0 2 272 0 370 725 6 0 63 chain 131585 chr14 107349540 + 105577115 105579026 SVA_F 1814 - 0 1479 27722 540 127 0 158 177 0 150 3 18 67 0 1 25 13 12 16 145 2 490 chain 3894 chr14 107349540 + 105577655 105577715 SVA_F 1814 - 716 776 136795 60 chain 5407 chr14 107349540 + 105577715 105577782 SVA_F 1814 - 649 716 86161 67 chain 11459 chr14 107349540 + 105577940 105578082 SVA_F 1814 - 889 1150 86161 26 2 1 17 0 1 25 1 0 28 2 122 41 chain 5238 chr14 107349540 + 105578391 105578447 SVA_F 1814 - 747 803 130383 56 chain 4610 chr14 107349540 + 105578447 105578502 SVA_F 1814 - 867 922 179041 55 chain 14212 chr14 107349540 + 105582038 105582213 MER50 708 - 22 197 143840 175 chain 23422 chr14 107349540 + 105641717 105642027 AluSp 311 - 22 302 113522 72 31 0 120 0 1 87 chain 3877 chr14 107349540 + 105725443 105725499 L1ME2z 1083 + 630 685 209200 18 1 0 37 chain 23740 chr14 107349540 + 105731962 105732258 AluY 311 + 11 303 111828 27 1 0 93 3 0 172 chain 87235 chr14 107349540 + 105739804 105740811 LTR5B 1012 + 0 1012 40675 107 1 4 826 0 2 73 chain 5197 chr14 107349540 + 105809740 105809987 L1ME1 1623 - 341 575 193057 41 142 133 18 18 14 28 chain 6312 chr14 107349540 + 105826287 105826377 Tigger3c 601 + 364 455 182702 26 5 6 59 chain 10585 chr14 107349540 + 105826457 105828905 Tigger1 2417 - 62 969 157896 94 2231 696 86 19 13 18 chain 23340 chr14 107349540 + 105838970 105839255 AluY 311 + 8 299 113979 45 3 9 237 chain 29412 chr14 107349540 + 105867732 105868069 L1PA5 6144 + 5797 6132 87011 234 1 0 95 1 0 6 chain 22051 chr14 107349540 + 105981524 105981816 AluSq2 311 - 9 300 120014 162 6 7 8 1 0 93 1 0 21 chain 6050 chr14 107349540 + 105982819 105983010 L1MB8 1703 + 82 292 184807 29 62 95 11 3 0 6 25 14 55 chain 11946 chr14 107349540 + 105983726 105983935 LOR1b 457 + 0 233 152420 20 19 30 42 0 4 48 1 0 23 16 26 40 chain 26815 chr14 107349540 + 105983935 105984287 THE1A 353 + 0 353 96924 110 1 0 53 0 1 128 0 2 7 3 1 40 0 1 10 chain 32727 chr14 107349540 + 106014652 106015150 LTR12C 1709 + 773 1198 79644 64 1 0 271 83 11 79 chain 8827 chr14 107349540 + 106015150 106015313 LTR12C 1709 + 713 877 151266 35 8 47 42 1 0 7 43 6 27 chain 34370 chr14 107349540 + 106019798 106020257 LTR5B 1012 - 537 1012 77105 57 1 0 47 13 12 19 1 0 24 0 2 172 1 14 111 0 4 13 chain 75887 chr14 107349540 + 106021213 106022141 LTR5B 1012 + 2 1012 45554 6 0 4 82 0 61 48 0 1 432 0 3 109 0 2 22 6 14 217 0 3 6 chain 132762 chr14 107349540 + 106139649 106141324 HERVK-int 6823 + 3734 5416 27465 4 1 0 521 2 1 307 0 1 433 0 5 133 1 0 24 20 24 229 chain 84711 chr14 107349540 + 106141536 106142540 LTR5B 1012 + 0 1012 41635 107 1 4 637 0 2 253 0 3 6 chain 4186 chr14 107349540 + 106197060 106197107 MER4C 627 + 0 47 204753 47 chain 76197 chr14 107349540 + 106244559 106245650 MER11A 1151 - 4 1151 45364 95 0 1 67 0 1 11 1 0 51 0 1 23 0 1 12 18 0 22 8 15 11 25 1 155 5 6 10 0 1 30 13 1 63 0 1 24 5 6 94 0 1 74 0 1 74 6 2 62 1 0 76 0 99 55 chain 112176 chr14 107349540 + 106254737 106256339 L1PB2 3958 + 2261 3838 33617 4 0 1 60 0 1 150 0 2 394 1 2 49 1 0 279 28 16 12 5 4 33 0 1 38 2 0 56 11 8 8 0 3 57 2 0 13 5 1 152 1 0 12 1 0 62 1 0 20 15 19 37 33 21 54 0 2 6 chain 4293 chr14 107349540 + 106262701 106262755 L1MA4 2864 + 2752 2804 203320 15 2 0 37 chain 21298 chr14 107349540 + 106277201 106277603 MSTA 426 - 12 420 122871 96 2 5 35 0 1 20 113 114 38 1 2 97 chain 25836 chr14 107349540 + 106279069 106279370 AluSp 311 + 4 305 100722 301 chain 14977 chr14 107349540 + 106291002 106291199 Tigger4b 360 - 22 222 141393 82 3 6 112 chain 311776 chr14 107349540 + 106291675 106296576 L1PB1 5432 - 19 5321 12934 9 1 0 12 1 0 22 1 0 24 2 0 5 64 49 11 1 0 40 7 6 14 2 1 50 3 1 11 4 0 11 1 0 13 2 1 19 3 0 5 6 7 474 3 0 204 0 1 53 16 1 386 299 0 251 1 0 198 1 5 180 0 12 38 1 0 8 0 1 236 1 0 149 0 6 40 0 4 13 1 0 9 3 0 95 0 1 7 1 0 101 36 40 96 0 1 223 452 1206 78 6 0 3 25 0 154 0 1 224 1 2 490 chain 21078 chr14 107349540 + 106295183 106295436 L1PBa 3878 + 2222 2475 123628 253 chain 12562 chr14 107349540 + 106295438 106295592 L1PBa 3878 + 1272 1426 150000 154 chain 285220 chr14 107349540 + 106336361 106340476 L1MA2 4263 - 150 4256 14340 8 1 0 38 16 9 92 1 0 8 1 0 16 0 1 26 2 1 41 7 8 59 18 15 81 14 8 11 22 19 10 1 0 4 11 13 60 5 1 10 2 0 30 11 0 217 1 0 90 3 1 65 12 7 73 19 18 44 4 0 93 0 1 247 1 7 37 1 0 104 3 1 232 0 4 25 0 1 14 30 29 53 0 1 91 3 0 126 2 1 548 3 7 69 2 1 4 0 1 170 0 12 371 1 0 94 0 4 6 0 4 70 1 0 116 8 3 88 48 61 76 1 0 93 7 5 63 3 6 17 0 4 19 0 3 25 1 0 15 chain 17092 chr14 107349540 + 106402114 106402470 THE1D 372 - 0 372 135341 32 1 0 116 136 153 71 chain 67099 chr14 107349540 + 106408347 106409120 LTR17 781 + 0 774 49619 327 0 1 446 chain 531921 chr14 107349540 + 106422193 106428323 L1PA4 6152 - 9 6142 3967 847 0 2 299 0 1 1312 2 0 517 1 0 1722 1 0 279 0 3 503 8 9 639 chain 48126 chr14 107349540 + 106428985 106429963 MER4E1 777 + 0 647 60385 25 2 0 194 357 0 103 7 26 85 0 1 106 2 10 97 chain 111553 chr14 107349540 + 106431251 106432629 HERVL-int 5654 + 4257 5654 33793 47 1 0 67 7 22 1020 6 11 230 chain 22101 chr14 107349540 + 106451764 106452020 AluSg7 307 - 41 297 119777 256 chain 89208 chr14 107349540 + 106487460 106488487 LTR5A 1029 - 1 1027 39926 881 1 0 145 chain 55498 chr14 107349540 + 106498723 106499523 MER11A 1151 + 72 1151 55416 104 8 0 23 3 1 16 0 15 58 14 11 26 37 0 62 0 1 128 0 1 42 0 312 24 1 0 5 1 2 91 0 1 90 1 0 66 chain 54901 chr14 107349540 + 106531793 106532464 MER11B 1079 + 0 668 55770 264 4 1 403 chain 234024 chr14 107349540 + 106532464 106535091 L1PA4 6152 + 3516 6146 17086 441 1 0 394 0 4 1791 chain 105320 chr14 107349540 + 106562003 106563220 L1PA5 6144 - 0 1217 35420 113 1 0 452 0 1 651 chain 68422 chr14 107349540 + 106563220 106564009 L1PA5 6144 + 4122 4920 49034 468 0 8 59 0 1 262 chain 75359 chr14 107349540 + 106564292 106565185 L1PA5 6144 - 14 916 45837 89 1 7 455 0 1 289 0 2 59 chain 128099 chr14 107349540 + 106568115 106569759 L1PA8 5853 + 4219 5853 28544 145 0 1 234 0 1 212 0 1 194 0 2 233 1 0 225 6 7 56 1 0 34 0 2 5 8 5 34 2 0 68 32 23 42 1 0 17 2 1 92 chain 228836 chr14 107349540 + 106615210 106618098 L1PA7 6471 - 15 2936 17366 227 0 1 208 0 16 302 0 2 72 0 5 21 0 10 50 0 3 16 0 1 187 3 6 111 4 0 204 3 0 21 10 9 573 0 1 125 6 8 268 1 0 180 0 2 3 4 0 289 chain 74435 chr14 107349540 + 106618098 106619079 L1PA7 6471 + 2540 3532 46267 92 6 0 42 1 3 257 0 16 169 1 0 4 3 0 293 0 4 66 14 13 33 chain 8289 chr14 107349540 + 106633987 106634087 L1P2 5180 - 3440 3540 169462 100 chain 47694 chr14 107349540 + 106640285 106640932 LTR6A 649 - 0 649 60700 62 1 0 202 0 2 48 0 1 240 65 66 6 1 0 22 chain 10561 chr14 107349540 + 106646113 106646269 HERVL-int 5654 + 5495 5654 157992 37 15 16 94 0 2 10 chain 51523 chr14 107349540 + 106653661 106654310 LTR6A 649 - 0 649 57948 20 0 1 188 6 5 435 chain 56366 chr14 107349540 + 106663466 106664115 LTR6A 649 - 0 649 54925 217 1 0 386 1 2 44 chain 435320 chr14 107349540 + 106699506 106704663 L1PA5 6144 - 6 5156 9187 12 1 0 102 2 0 6 0 2 1151 0 1 256 1 0 254 6 10 63 8 9 148 1 2 445 3 0 426 0 1 80 1 0 121 0 2 612 3 7 119 7 0 1129 23 14 150 0 1 27 chain 21438 chr14 107349540 + 106710640 106710973 THE1A 353 - 20 353 122379 57 0 1 27 40 39 96 5 4 97 0 1 11 chain 7091 chr14 107349540 + 106723478 106723573 L1PA4 6152 - 253 340 176824 32 8 0 55 chain 18228 chr14 107349540 + 106723575 106723796 L1PA4 6152 + 5914 6137 132260 191 0 2 30 chain 7194 chr14 107349540 + 106732080 106732172 L1PA6 6164 + 6071 6161 176112 70 0 1 10 3 0 9 chain 164626 chr14 107349540 + 106753702 106755773 L1PA7 6471 - 14 2087 22720 128 4 6 35 4 0 151 0 1 405 28 30 202 0 1 17 0 1 264 6 5 262 1 0 174 0 1 390 chain 21108 chr14 107349540 + 106755773 106756032 L1PA7 6471 + 4102 4360 123529 97 1 0 161 chain 38333 chr14 107349540 + 106793920 106794348 L1PA4 6152 + 5708 6136 71678 428 chain 38477 chr14 107349540 + 106818637 106819065 L1PA4 6152 + 5708 6136 71476 428 chain 7350 chr14 107349540 + 106837800 106837888 HERVL-int 5654 + 5550 5640 175095 8 0 2 80 chain 28972 chr14 107349540 + 106855860 106856179 L1PA2 6032 - 0 319 89123 319 chain 115117 chr14 107349540 + 106861479 106862798 L1PA4 6152 - 1003 2328 32749 489 0 1 301 0 4 415 0 1 114 chain 85978 chr14 107349540 + 106862798 106863788 L1PA4 6152 + 5156 6152 41001 471 1 0 512 0 7 6 chain 14314 chr14 107349540 + 106864984 106865191 L1PA6 6164 + 5955 6160 143511 47 8 15 7 3 0 5 4 0 125 2 0 6 chain 275986 chr14 107349540 + 106883122 106886193 L1PA4 6152 + 3078 6151 14873 17 0 2 3054 chain 42151 chr14 107349540 + 106894058 106894568 MER9a2 513 + 0 513 66453 225 0 1 29 10 9 190 0 2 37 0 1 19 chain 25734 chr14 107349540 + 106900786 106901109 L1PA7 6471 - 7 329 101145 5 3 0 145 0 2 170 chain 69172 chr14 107349540 + 106903197 106904145 LTR5B 1012 - 15 1012 48729 201 8 11 201 0 1 81 0 26 97 15 14 70 22 21 135 0 13 88 0 4 22 0 4 8 chain 64172 chr14 107349540 + 106918175 106918897 L1PA4 6152 + 5410 6133 50926 111 1 0 90 1 0 359 0 3 160 chain 75748 chr14 107349540 + 106947379 106948382 LTR13 1007 - 0 1007 45622 31 3 1 62 0 5 131 2 0 40 1 2 36 6 5 65 2 1 114 0 1 18 1 6 103 4 5 210 1 0 98 2 0 73 chain 13989 chr14 107349540 + 106953997 106954322 L1PB1 5432 - 28 325 144614 13 16 15 6 1 0 24 2 0 14 1 0 5 2 0 19 20 12 15 1 0 44 1 0 18 1 0 51 2 0 9 22 17 4 1 0 10 0 3 11 5 0 7 chain 29095 chr14 107349540 + 106954401 106954716 AluYb8 318 + 0 312 88574 288 3 0 24 chain 34522 chr14 107349540 + 106990850 106991304 LTR30 714 - 271 714 76877 165 27 11 9 0 5 253 chain 74806 chr14 107349540 + 106995396 106996352 LTR13_ 950 + 2 950 46111 279 0 1 271 0 1 53 19 8 139 2 1 49 10 12 134 chain 3975 chr14 107349540 + 107024151 107024194 L1P1 4361 - 68 111 207755 43 chain 82436 chr14 107349540 + 107047226 107048228 LTR13 1007 - 0 1007 42569 185 6 7 129 0 2 239 0 1 58 5 6 380 chain 28471 chr14 107349540 + 107072612 107072916 AluYa5 310 - 6 310 91303 304 chain 8667 chr14 107349540 + 107092676 107092766 5S 121 + 0 90 167381 90 chain 21365 chr14 107349540 + 107110022 107110301 AluY 311 + 36 302 122632 95 1 2 45 0 1 109 15 0 14 chain 34461 chr14 107349540 + 107112742 107113284 LTR22 571 + 0 568 76976 72 12 11 75 0 1 69 0 36 7 0 1 99 5 7 58 47 36 64 5 6 9 1 0 8 2 0 9 chain 12372 chr14 107349540 + 107127054 107127189 L1PA4 6152 + 6016 6151 150745 135 chain 16615 chr14 107349540 + 107129612 107129822 L1PA6 6164 + 5952 6160 136622 202 2 0 6 chain 8447 chr14 107349540 + 107154065 107154229 LTR22B 500 + 68 231 168584 55 5 3 14 34 35 56 chain 43242 chr14 107349540 + 107185835 107186359 MER11C 1089 + 548 1073 65125 25 27 27 243 0 1 229 chain 11709 chr14 107349540 + 107194867 107195041 L1P4 1494 - 1221 1401 153423 29 0 2 26 11 16 56 1 0 51 chain 56933 chr14 107349540 + 107203116 107203803 L1PA4 6152 - 16 677 54572 131 12 9 240 1 0 119 22 0 162 chain 59105 chr14 107349540 + 107205063 107205729 L1PA4 6152 - 0 671 53327 6 0 5 660 chain 67645 chr14 107349540 + 107205736 107206498 L1PA4 6152 + 4744 5506 49391 762 chain 28485 chr14 107349540 + 107214933 107215255 L1PA7 6471 + 6143 6465 91241 322 chain 3002 chr14 107349540 + 107217458 107217490 MLT2C1 407 + 48 80 225010 32 chain 5374 chr14 107349540 + 107222079 107222172 MER52C 1267 + 875 966 191264 39 18 16 36 chain 69499 chr14 107349540 + 107227253 107228018 L1PA3long 6157 + 5386 6157 48608 525 0 5 51 0 1 189 chain 27842 chr14 107349540 + 107239274 107239582 AluYa5 310 - 3 310 93555 47 2 1 259 chain 272470 chr14 107349540 + 107264098 107267494 L1PA7 6471 - 6 3382 15049 145 2 1 187 0 1 134 11 5 272 3 0 5 0 3 9 6 23 59 1 0 15 0 4 36 1 0 368 0 1 237 0 1 91 4 5 370 1 0 643 58 26 6 3 0 212 1 0 108 0 1 408 chain 80733 chr14 107349540 + 107271546 107272447 L1PA2 6032 - 0 902 43295 431 0 1 24 1 0 402 1 2 42 chain 31671 chr14 107349540 + 107272458 107272815 L1P1 4361 + 3707 4065 81370 65 0 1 292 chain 3002 chr14 107349540 + 107279295 107279327 U3 216 + 1 33 224981 32 chain 37437 chr14 107349540 + 107284842 107285352 LTR15 485 + 0 485 72910 107 1 0 170 0 4 61 4 0 37 0 2 73 28 3 24 1 0 4 chain 28633 chr14 107349540 + 107285725 107286217 HERV1_LTRa 508 + 0 508 90594 27 46 53 10 1 0 19 0 3 94 0 1 21 25 14 27 19 36 203 chain 114708 chr15 102531392 + 20022225 20023450 L1HS 6032 - 0 1225 32879 1225 chain 59055 chr15 102531392 + 20023453 20024080 L1HS 6032 + 4181 4808 53361 627 chain 154573 chr15 102531392 + 20028072 20029787 L1PA2 6032 - 7 1854 24038 143 0 1 1374 1 0 92 0 132 105 chain 74231 chr15 102531392 + 20029787 20030610 L1PA3long 6157 + 5333 6156 46351 823 chain 22341 chr15 102531392 + 20035181 20035459 L1P1 4361 - 36 312 118741 19 2 1 153 2 1 102 chain 21053 chr15 102531392 + 20035461 20035724 L1PA3long 6157 + 5892 6155 123720 263 chain 222077 chr15 102531392 + 20050342 20052806 L1PA3long 6157 - 15 2484 17754 795 0 2 31 0 4 675 1 0 962 chain 17961 chr15 102531392 + 20060623 20060862 AluY 311 + 59 296 132956 66 2 0 9 0 1 136 11 10 15 chain 83149 chr15 102531392 + 20071352 20072364 LTR5B 1012 + 0 1012 42274 134 18 4 71 1 10 165 0 1 294 0 1 105 0 3 224 chain 3544 chr15 102531392 + 20074851 20074896 L1MB4 1306 + 711 756 214641 45 chain 356518 chr15 102531392 + 20095601 20099577 L1PA2 6032 + 2037 6014 11444 957 0 1 3019 chain 526845 chr15 102531392 + 20153480 20159615 L1PA4 6152 + 10 6152 4516 1442 0 5 717 0 1 515 0 1 341 0 2 648 4 0 669 0 4 134 4 1 1331 1 0 181 5 1 35 0 1 102 0 5 6 chain 46342 chr15 102531392 + 20176764 20177411 LTR6A 649 - 0 649 61732 62 1 0 202 0 2 224 0 1 64 65 66 6 1 0 22 chain 11562 chr15 102531392 + 20182587 20182743 HERVL-int 5654 + 5495 5654 154061 49 3 4 95 0 2 9 chain 57892 chr15 102531392 + 20190918 20191651 L1PA7 6471 + 5735 6466 54040 351 0 1 50 3 2 168 1 2 149 3 0 8 chain 23343 chr15 102531392 + 20195104 20195375 AluY 311 + 6 277 113964 126 0 1 34 1 0 110 chain 8265 chr15 102531392 + 20206920 20207023 MER30B 195 + 89 192 169595 103 chain 522357 chr15 102531392 + 20237197 20243323 L1PA4 6152 - 9 6142 4920 244 1 2 581 1 2 13 0 2 814 0 2 588 0 1 212 1 0 475 1 0 1497 1 2 835 2 1 4 0 1 209 8 9 521 8 7 5 0 1 105 chain 46640 chr15 102531392 + 20244315 20245307 MER4E1 777 + 0 647 61504 25 2 0 194 380 0 103 7 26 85 0 1 106 1 9 74 0 9 15 chain 111161 chr15 102531392 + 20246595 20247977 HERVL-int 5654 + 4257 5654 33892 47 1 0 67 7 22 893 0 1 367 chain 22379 chr15 102531392 + 20247977 20248366 MLT2A2 560 + 0 501 118591 168 12 10 15 33 34 68 9 118 45 23 27 16 chain 40024 chr15 102531392 + 20265103 20265568 L1PA5 6144 + 5686 6144 69284 452 7 0 6 chain 75348 chr15 102531392 + 20267910 20268777 L1PA5 6144 + 5271 6143 45847 26 0 4 700 0 1 141 chain 66500 chr15 102531392 + 20334188 20334933 L1PA5 6144 + 5399 6144 49866 745 chain 11234 chr15 102531392 + 20339014 20339178 L1MA5 2750 - 151 315 155289 13 0 4 7 6 2 4 0 1 4 1 0 129 chain 24998 chr15 102531392 + 20358304 20358577 AluY 311 + 38 309 104801 94 0 1 171 3 0 5 chain 462303 chr15 102531392 + 20400184 20405644 L1PA7 6471 - 3 5567 8313 265 0 4 244 8 9 119 0 3 206 0 4 665 1 0 342 0 1 9 0 8 220 0 1 87 11 18 656 0 1 147 10 70 41 0 12 695 0 2 885 0 1 849 chain 113938 chr15 102531392 + 20408545 20409843 SVA_C 1631 - 6 1390 33107 524 0 3 6 4 1 33 0 86 731 chain 16179 chr15 102531392 + 20421416 20421651 MER50 708 + 450 685 137821 34 1 0 8 22 23 170 chain 28148 chr15 102531392 + 20429283 20429660 THE1C 375 + 0 375 92467 125 3 0 15 2 0 84 5 8 74 0 1 43 1 0 25 chain 4648 chr15 102531392 + 20431640 20431696 MER94 134 - 11 67 199083 56 chain 545805 chr15 102531392 + 20516283 20522304 L1PA2 6032 + 2 6032 1976 249 6 5 217 15 19 328 0 4 1366 3 1 947 0 4 1990 2 1 876 0 1 22 chain 64136 chr15 102531392 + 20529122 20529861 L1PA5 6144 - 4 745 50946 101 0 3 32 7 0 310 0 6 289 chain 32834 chr15 102531392 + 20540870 20541313 L1PA7 6471 - 4 446 79484 139 1 0 4 0 1 13 14 13 272 chain 3748 chr15 102531392 + 20541313 20541379 L1PA16 3655 + 3454 3535 211193 27 12 27 27 chain 23692 chr15 102531392 + 20561130 20561424 AluSp 311 - 19 311 112072 160 1 0 7 1 0 125 chain 55681 chr15 102531392 + 20579512 20580211 L1P1 4361 - 20 715 55319 12 2 1 23 1 0 157 1 0 109 0 1 343 14 12 37 chain 125518 chr15 102531392 + 20580214 20581823 L1PA8 5853 + 4254 5853 29239 749 5 0 6 1 2 511 0 1 43 1 0 34 10 8 71 2 1 16 1 0 44 2 1 16 7 6 90 chain 100576 chr15 102531392 + 20588801 20589960 L1PA3long 6157 + 4988 6149 36607 392 3 5 618 11 11 135 chain 21689 chr15 102531392 + 20599497 20599757 L1PREC2 3366 - 614 875 121434 34 0 1 226 chain 46045 chr15 102531392 + 20611564 20612064 L1PA2 6032 - 0 504 61997 58 0 4 442 chain 487001 chr15 102531392 + 20616757 20622251 L1PA4 6152 - 9 5522 7484 1792 0 8 1079 0 13 42 2 0 2579 chain 4690 chr15 102531392 + 20639769 20639826 MER2 342 + 204 261 198631 57 chain 3517 chr15 102531392 + 20685054 20685219 MER58B 340 + 159 323 215119 4 0 1 19 82 82 12 16 14 32 chain 22667 chr15 102531392 + 20703418 20703697 AluSg 306 + 23 302 117235 279 chain 16628 chr15 102531392 + 20716063 20716279 AluSg7 307 + 36 259 136591 75 0 7 13 0 1 56 1 0 71 chain 20166 chr15 102531392 + 20720399 20720675 AluY 311 + 30 302 126628 103 15 14 148 3 0 7 chain 5664 chr15 102531392 + 20776303 20776366 7SLRNA 320 + 113 176 188442 63 chain 11321 chr15 102531392 + 20813521 20813650 LTR8 732 + 0 129 154995 129 chain 500818 chr15 102531392 + 20834160 20840542 L1PA7 6471 + 77 6459 6794 16 1 8 142 18 1 121 1 4 43 45 41 61 0 1 426 4 5 142 13 17 81 0 1 239 1 0 338 0 1 188 0 12 97 0 1 4 1 0 192 3 2 5 0 1 230 0 2 6 17 15 57 10 9 54 4 6 508 1 2 237 0 1 221 8 8 81 0 1 298 2 0 6 0 4 186 14 14 210 3 0 64 0 1 467 2 0 64 10 1 146 0 1 447 2 0 845 chain 77414 chr15 102531392 + 20860660 20861508 L1PA3long 6157 - 0 849 44769 5 1 0 453 0 2 389 chain 20703 chr15 102531392 + 20873595 20873855 AluY 311 + 39 303 124954 69 0 3 21 0 1 170 chain 7367 chr15 102531392 + 20944007 20944098 U6 107 + 0 91 174997 91 chain 6986 chr15 102531392 + 20944844 20944957 L1PA16 3655 + 3402 3573 177575 44 0 1 12 12 69 45 chain 46947 chr15 102531392 + 20950436 20950974 L1PA4 6152 - 0 538 61259 174 2 0 79 0 2 283 chain 42688 chr15 102531392 + 20950974 20951447 L1PA4 6152 + 5135 5608 65791 473 chain 45951 chr15 102531392 + 20972474 20972988 L1PA3long 6157 - 0 517 62082 409 0 3 105 chain 27053 chr15 102531392 + 20994162 20994730 LTR4 552 + 34 552 96104 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 3729 chr15 102531392 + 21013442 21013481 HY3 101 - 1 40 211481 39 chain 32803 chr15 102531392 + 21032975 21033442 L1PA7 6471 + 2277 2720 79523 160 0 1 5 1 0 189 28 0 51 4 5 17 0 3 12 chain 18738 chr15 102531392 + 21034631 21034851 L1PA7 6471 + 5369 5589 130860 220 chain 55838 chr15 102531392 + 21034855 21035593 L1PA7 6471 + 5594 6342 55224 27 1 0 51 0 1 11 27 35 589 1 3 31 chain 7571 chr15 102531392 + 21035609 21035702 L1PA7 6471 + 6376 6469 173717 93 chain 71185 chr15 102531392 + 21112945 21113721 L1PA3long 6157 + 5370 6149 47851 126 0 3 650 chain 9581 chr15 102531392 + 21114587 21114706 MER4A1 472 + 0 121 162692 99 0 2 20 chain 37218 chr15 102531392 + 21166940 21167379 L1PA4 6152 + 5574 6018 73211 323 0 1 96 5 9 15 chain 33494 chr15 102531392 + 21173386 21173772 L1PA5 6144 - 5 390 78420 325 4 3 57 chain 42228 chr15 102531392 + 21189078 21189593 L1PA7 6471 - 701 1217 66364 67 2 3 27 0 1 51 1 0 367 chain 55751 chr15 102531392 + 21189593 21190268 L1PA7 6471 + 5784 6457 55271 449 2 0 57 2 0 5 13 15 147 chain 110083 chr15 102531392 + 21198688 21199928 L1PA3long 6157 - 1 1243 34192 4 1 0 9 3 0 142 0 1 60 1 6 1020 chain 46435 chr15 102531392 + 21201009 21201533 L1PA4 6152 - 355 879 61651 524 chain 32878 chr15 102531392 + 21201533 21201901 L1PA4 6152 + 5774 6143 79398 124 1 0 231 0 2 12 chain 8387 chr15 102531392 + 21213658 21213761 MER30B 195 + 89 192 168925 103 chain 521361 chr15 102531392 + 21243927 21250050 L1PA4 6152 - 9 6142 5022 244 1 2 581 1 2 13 0 2 814 0 2 588 0 1 212 1 0 479 1 0 1493 1 2 835 2 1 4 0 1 180 1 4 25 8 9 521 8 7 5 0 1 105 chain 46571 chr15 102531392 + 21251032 21252093 MER4E1 777 + 0 647 61547 25 2 0 194 449 0 103 7 26 85 0 1 106 1 9 74 0 9 15 chain 110934 chr15 102531392 + 21253381 21254763 HERVL-int 5654 + 4257 5654 33955 47 1 0 67 7 22 892 0 1 368 chain 22165 chr15 102531392 + 21254763 21255152 MLT2A2 560 + 0 501 119523 168 12 10 15 33 34 68 9 118 45 23 27 16 chain 40033 chr15 102531392 + 21271867 21272332 L1PA5 6144 + 5686 6144 69274 452 7 0 6 chain 11102 chr15 102531392 + 21272636 21272756 L1HS 6032 - 1 121 155794 120 chain 75226 chr15 102531392 + 21275105 21275972 L1PA5 6144 + 5271 6143 45911 26 0 4 701 0 1 140 chain 66500 chr15 102531392 + 21340793 21341538 L1PA5 6144 + 5399 6144 49865 745 chain 11234 chr15 102531392 + 21345619 21345783 L1MA5 2750 - 151 315 155288 13 0 4 7 6 2 4 0 1 4 1 0 129 chain 25416 chr15 102531392 + 21364901 21365173 AluY 311 + 38 311 102608 94 0 1 178 chain 48025 chr15 102531392 + 21916771 21917715 PABL_B 668 - 28 668 60463 42 0 1 42 0 1 78 8 0 30 317 9 131 0 9 12 0 1 6 1 0 139 0 1 138 chain 122355 chr15 102531392 + 21938217 21939581 L1PA4 6152 + 4774 6143 30265 444 0 1 85 0 4 835 chain 7367 chr15 102531392 + 21950658 21950749 U6 107 + 0 91 174996 91 chain 6986 chr15 102531392 + 21951495 21951608 L1PA16 3655 + 3402 3573 177574 44 0 1 12 12 69 45 chain 46956 chr15 102531392 + 21957067 21957605 L1PA4 6152 - 0 538 61250 174 2 0 79 0 2 283 chain 42819 chr15 102531392 + 21957605 21958078 L1PA4 6152 + 5135 5608 65628 473 chain 46165 chr15 102531392 + 21979142 21979656 L1PA3long 6157 - 0 517 61881 409 0 3 105 chain 27053 chr15 102531392 + 22000833 22001401 LTR4 552 + 34 552 96103 30 40 49 68 1 0 11 12 11 115 78 7 50 51 66 23 1 0 88 chain 3729 chr15 102531392 + 22020106 22020145 HY3 101 - 1 40 211480 39 chain 95287 chr15 102531392 + 22039648 22046852 L1PA7 6471 + 2277 6469 38007 132 19 18 205 29 0 51 4 5 20 0 3 9 5664 2649 220 4 5 27 1 0 51 0 1 11 27 35 589 1 3 31 16 34 93 chain 71390 chr15 102531392 + 22124106 22124882 L1PA3long 6157 + 5370 6149 47750 126 0 3 650 chain 9581 chr15 102531392 + 22125748 22125867 MER4A1 472 + 0 121 162691 99 0 2 20 chain 15644 chr15 102531392 + 22162402 22162610 L1PA10 4194 - 717 930 139453 46 7 9 11 0 3 144 chain 36961 chr15 102531392 + 22178169 22178606 L1PA4 6152 + 5574 6019 73567 292 0 3 28 0 1 96 5 9 16 chain 33708 chr15 102531392 + 22184619 22185005 L1PA5 6144 - 5 390 78084 325 4 3 57 chain 42032 chr15 102531392 + 22200305 22200820 L1PA7 6471 - 701 1217 66581 67 2 3 30 0 1 48 1 0 367 chain 55769 chr15 102531392 + 22200820 22201513 L1PA7 6471 + 5784 6468 55263 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 74668 chr15 102531392 + 22209946 22210800 L1PA3long 6157 - 17 878 46180 133 0 1 66 1 6 304 0 1 350 chain 33351 chr15 102531392 + 22210801 22211167 L1PA4 6152 + 5775 6143 78651 354 0 2 12 chain 33708 chr15 102531392 + 22267046 22267432 L1PA5 6144 - 5 390 78083 325 4 3 57 chain 42032 chr15 102531392 + 22282732 22283247 L1PA7 6471 - 701 1217 66580 67 2 3 30 0 1 48 1 0 367 chain 55769 chr15 102531392 + 22283247 22283940 L1PA7 6471 + 5784 6468 55262 449 2 0 57 2 0 5 13 15 147 7 0 11 chain 74668 chr15 102531392 + 22292373 22293227 L1PA3long 6157 - 17 878 46179 133 0 1 66 1 6 304 0 1 350 chain 33351 chr15 102531392 + 22293228 22293594 L1PA4 6152 + 5775 6143 78650 354 0 2 12 chain 262059 chr15 102531392 + 22311648 22314588 L1PA3long 6157 - 8 2960 15579 180 0 1 442 1 3 196 5 6 652 1 2 177 0 1 59 0 1 71 0 4 409 0 1 747 chain 3686 chr15 102531392 + 22342340 22342385 MIR 256 + 81 126 212142 45 chain 319186 chr15 102531392 + 22358873 22362321 L1PA2 6032 - 0 3448 12627 3448 chain 24454 chr15 102531392 + 22388314 22388826 L1PA15 4387 - 21 507 107785 11 1 0 26 7 3 11 3 1 11 1 3 5 2 0 20 22 19 38 16 11 22 1 0 52 8 7 22 19 18 70 9 6 77 1 0 26 2 0 17 2 0 10 chain 2860 chr15 102531392 + 22389596 22389658 L1PREC2 3366 - 403 460 227673 11 4 0 4 0 1 22 7 5 14 chain 18881 chr15 102531392 + 22395731 22395976 L1PA15 4387 + 3210 3455 130423 20 1 0 114 0 1 110 chain 7638 chr15 102531392 + 22396055 22396143 L1PA4 6152 - 10 97 173299 46 1 0 41 chain 527431 chr15 102531392 + 22400937 22407375 L1PA7 6471 - 28 6471 4454 740 1 0 79 0 2 118 25 0 6 0 1 198 0 1 268 1 8 200 0 4 15 0 1 124 0 4 419 0 3 92 3 4 320 1 0 212 0 1 50 0 3 672 0 1 399 19 20 156 0 1 60 19 18 179 4 1 502 0 1 414 12 13 728 0 2 188 1 2 213 chain 53279 chr15 102531392 + 22438281 22438873 L1PA3long 6157 - 8 601 56840 80 0 1 512 chain 73054 chr15 102531392 + 22485013 22485844 L1PA5 6144 - 0 836 47001 258 0 1 315 0 2 193 0 2 65 chain 55147 chr15 102531392 + 22497379 22498086 L1PA10 4194 + 3447 4161 55616 166 1 2 33 0 4 226 1 0 125 12 20 79 6 5 10 3 0 33 1 0 11 chain 29222 chr15 102531392 + 22509738 22510496 PABL_A 660 + 83 619 87949 83 11 15 24 15 16 20 0 1 9 7 76 108 304 2 42 1 6 134 chain 52349 chr15 102531392 + 22535674 22536368 THE1D-int 1627 + 895 1627 57399 91 4 0 201 11 50 301 0 1 37 2 1 13 0 3 34 chain 6149 chr15 102531392 + 22537282 22537372 MLT1D 503 + 406 494 183991 55 0 2 5 2 0 5 2 0 21 chain 11067 chr15 102531392 + 22569478 22569605 L1PA4 6152 - 0 127 155937 127 chain 59733 chr15 102531392 + 22661840 22662575 L1PA7 6471 + 5726 6459 52976 414 2 0 104 4 3 60 0 1 151 chain 48667 chr15 102531392 + 22749348 22749916 L1PA4 6152 + 5583 6151 59982 304 6 5 254 0 1 4 chain 6102 chr15 102531392 + 22758048 22758135 MER47A 366 + 101 187 184391 75 2 1 10 chain 25809 chr15 102531392 + 22758683 22758956 AluYa5 310 + 34 307 100833 273 chain 211023 chr15 102531392 + 22773808 22776195 L1PA5 6144 - 0 2387 18428 37 20 19 2156 1 2 173 chain 25993 chr15 102531392 + 22809751 22810172 MSTA 426 + 0 426 100042 23 3 7 51 1 0 17 5 6 26 3 2 11 35 39 29 2 0 215 chain 21917 chr15 102531392 + 22810196 22810473 MSTA-int 1630 + 24 301 120558 277 chain 21144 chr15 102531392 + 22817331 22817607 LTR19A 502 + 0 265 123395 46 24 12 142 0 1 64 chain 5931 chr15 102531392 + 22842570 22842643 MER2B 336 + 211 284 185874 73 chain 39253 chr15 102531392 + 22855818 22856554 L1MA5A 2387 - 99 811 70385 28 1 5 19 50 21 34 1 0 4 5 7 15 2 0 36 91 91 5 0 1 51 1 2 183 2 0 5 0 2 35 0 3 18 1 0 56 1 0 31 1 0 60 chain 22424 chr15 102531392 + 22986784 22987147 THE1D 372 + 0 372 118360 53 15 6 42 6 15 12 0 4 34 17 28 6 7 0 55 0 1 116 chain 12259 chr15 102531392 + 22987150 22987310 THE1D-int 1627 + 0 160 151166 104 3 0 5 3 6 45 chain 18512 chr15 102531392 + 22988918 22989227 THE1D 372 + 0 307 131467 13 0 2 6 1 0 32 9 0 113 15 27 7 7 0 47 5 6 54 chain 82548 chr15 102531392 + 23038830 23039881 MER11C 1089 + 0 1063 42518 23 5 4 223 0 1 62 0 4 69 1 0 205 24 22 77 0 4 5 1 0 17 0 5 16 0 1 37 0 1 89 0 1 197 chain 22540 chr15 102531392 + 23080439 23080708 AluY 311 + 29 299 117846 103 0 1 166 chain 5976 chr15 102531392 + 23081819 23081888 MER50 708 - 144 213 185460 69 chain 6790 chr15 102531392 + 23082888 23082973 MER50 708 + 500 585 179024 85 chain 13612 chr15 102531392 + 23100993 23101149 AluSp 311 + 145 301 145925 156 chain 75446 chr15 102531392 + 23128867 23129693 L1PA4 6152 + 5308 6140 45794 820 0 6 6 chain 82786 chr15 102531392 + 23159334 23160276 L1PA4 6152 + 5207 6151 42423 192 0 3 179 6 5 565 chain 20149 chr15 102531392 + 23164892 23165139 AluY 311 + 59 295 126678 59 12 0 14 0 1 162 chain 24851 chr15 102531392 + 23168446 23168744 AluY 311 + 1 304 105620 130 0 2 9 1 4 158 chain 43338 chr15 102531392 + 23188767 23189266 MER9a1 513 + 0 513 64996 41 0 12 337 1 3 120 chain 28526 chr15 102531392 + 23189681 23189979 AluYd8 298 + 0 298 91072 298 chain 2915 chr15 102531392 + 23199632 23199665 L1PB4 2604 + 2497 2530 226778 33 chain 36509 chr15 102531392 + 23223364 23223849 MER1A 529 + 46 529 74228 410 20 18 55 chain 56463 chr15 102531392 + 23229137 23229940 MER4E1 777 - 0 777 54872 8 0 2 209 15 13 53 26 0 160 5 6 73 4 5 7 1 0 48 1 0 19 4 3 146 0 1 24 chain 90818 chr15 102531392 + 23276859 23277924 MER11C 1089 - 16 1089 39348 83 0 2 389 12 13 361 0 5 220 chain 4673 chr15 102531392 + 23284317 23284630 L1ME3A 1206 + 654 937 198835 22 241 211 50 chain 19153 chr15 102531392 + 23291492 23291747 AluY 311 + 58 311 129670 68 1 2 65 1 0 43 2 0 75 chain 4690 chr15 102531392 + 23307234 23307291 MER2 342 + 204 261 198630 57 chain 3517 chr15 102531392 + 23352493 23352658 MER58B 340 + 159 323 215118 4 0 1 19 82 82 12 16 14 32 chain 47997 chr15 102531392 + 23361364 23362072 L1MA3 4352 - 2144 2848 60492 144 5 6 83 2 1 83 1 0 99 0 3 136 1 0 27 17 16 28 10 7 47 1 0 24 chain 22852 chr15 102531392 + 23370810 23371090 AluSg 306 + 23 303 116323 280 chain 16628 chr15 102531392 + 23382856 23383072 AluSg7 307 + 36 259 136590 75 0 7 13 0 1 56 1 0 71 chain 19952 chr15 102531392 + 23387195 23387471 AluY 311 + 30 302 127295 103 15 14 148 3 0 7 chain 28800 chr15 102531392 + 23426846 23427161 AluY 311 + 0 311 89898 123 2 0 3 2 0 185 chain 5664 chr15 102531392 + 23443701 23443764 7SLRNA 320 + 113 176 188441 63 chain 11321 chr15 102531392 + 23480905 23481034 LTR8 732 + 0 129 154994 129 chain 500497 chr15 102531392 + 23501564 23507947 L1PA7 6471 + 77 6459 6807 16 1 8 142 18 1 121 1 4 43 47 41 61 0 1 423 7 8 142 13 17 81 0 1 166 3 4 6 1 0 63 1 0 338 0 1 188 0 12 97 0 1 4 1 0 188 0 2 10 1 0 230 0 2 6 17 15 57 10 9 54 4 6 508 1 2 237 0 1 221 8 8 81 0 1 298 2 0 6 0 4 186 14 14 210 3 0 64 0 1 467 2 0 64 10 1 146 0 1 447 2 0 845 chain 5664 chr15 102531392 + 23608513 23608576 7SLRNA 320 + 113 176 188440 63 chain 28014 chr15 102531392 + 23650525 23650880 THE1A 353 - 0 353 92951 151 1 0 91 1 0 111 chain 20075 chr15 102531392 + 23674897 23675172 AluY 311 + 30 301 126897 103 15 14 147 3 0 7 chain 9682 chr15 102531392 + 23698682 23698887 L1MA3 4352 - 0 193 162186 13 18 14 11 1 0 26 3 2 4 1 0 21 9 7 17 7 4 74 chain 110969 chr15 102531392 + 23723923 23725549 MER61-int 3695 + 0 2515 33941 28 7 0 9 25 18 30 16 14 36 0 4 59 39 0 71 9 8 36 27 20 59 0 1 19 15 1 59 0 1 66 0 945 296 5 6 190 5 3 184 0 2 18 0 3 47 0 1 141 0 10 130 chain 31086 chr15 102531392 + 23725549 23725992 L1PB 1623 - 1018 1448 82370 121 1 0 66 2 1 18 2 1 75 6 0 54 1 0 70 14 11 13 chain 28680 chr15 102531392 + 23731301 23731626 L1PA4 6152 - 9 334 90406 104 0 1 35 1 0 185 chain 3356 chr15 102531392 + 23733778 23733842 L1ME1 1623 + 723 782 217941 22 12 6 16 0 1 14 chain 6478 chr15 102531392 + 23742877 23742989 LTR47A 437 - 11 133 181409 24 18 20 54 0 8 16 chain 11264 chr15 102531392 + 23757010 23757164 MER61F 604 - 446 604 155180 24 0 1 105 3 6 22 chain 12852 chr15 102531392 + 23758230 23758528 LTR35A 463 - 227 463 148835 27 2 0 37 5 3 39 31 17 27 28 1 25 1 0 17 13 1 29 4 0 13 chain 13025 chr15 102531392 + 23764977 23765338 LTR35A 463 - 158 445 148163 17 4 1 15 0 33 10 39 0 20 2 0 35 12 10 34 17 3 11 11 0 25 34 11 17 1 0 15 12 0 30 chain 7676 chr15 102531392 + 23766887 23766982 MSTD-int 1705 - 1587 1682 173072 95 chain 25179 chr15 102531392 + 23776750 23777037 AluSc 308 - 10 297 103852 287 chain 3644 chr15 102531392 + 23793236 23793279 MER74A 558 + 30 73 212913 43 chain 25450 chr15 102531392 + 23799605 23799961 THE1B 368 - 2 368 102458 166 4 0 25 2 1 92 23 38 44 chain 41680 chr15 102531392 + 23800156 23801100 L1PA16 3655 + 2268 2883 67051 169 34 33 9 327 0 188 1 0 4 6 5 104 1 2 101 chain 4203 chr15 102531392 + 23817584 23817632 MLT1A0 366 - 44 92 204507 48 chain 49019 chr15 102531392 + 23831188 23831775 LTR10C 591 + 0 591 59734 94 3 5 411 0 2 79 chain 14242 chr15 102531392 + 23840433 23840660 LOR1-int 1871 - 636 859 143754 105 1 0 8 1 4 22 22 16 68 chain 47032 chr15 102531392 + 23847058 23847706 MER50B 698 - 46 684 61179 117 1 0 221 1 2 44 1 0 31 14 8 14 17 12 36 1 2 113 0 1 37 chain 23644 chr15 102531392 + 23859296 23859612 L1PA8 5853 - 0 319 112340 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 46 5 14 14 chain 44039 chr15 102531392 + 23873746 23874317 LTR22 571 + 22 571 64159 21 0 1 210 23 0 317 chain 24536 chr15 102531392 + 23876148 23876430 AluY 311 + 10 289 107331 117 3 0 162 chain 4799 chr15 102531392 + 23901378 23901455 MLT2B4 540 - 58 127 197372 52 12 4 13 chain 3390 chr15 102531392 + 23911829 23911870 L1MD2 1676 - 702 743 217279 41 chain 2856 chr15 102531392 + 23918510 23918540 U2 167 + 0 30 227721 30 chain 23792 chr15 102531392 + 23923792 23924088 L1PA6 6164 - 3 294 111519 9 4 0 19 2 1 262 chain 32197 chr15 102531392 + 23924389 23924748 L1PA5 6144 - 1911 2271 80227 278 0 1 81 chain 168917 chr15 102531392 + 23924748 23926645 L1PA5 6144 + 4240 6141 22173 181 1 2 407 0 1 339 0 1 812 0 1 157 chain 37512 chr15 102531392 + 23940763 23941271 MER9a3 513 - 1 513 72797 78 25 26 152 1 0 78 5 6 61 0 1 90 0 2 18 chain 371421 chr15 102531392 + 23941274 23945599 HERVK9-int 4720 - 2 4344 11045 8 0 1 4 1 0 19 2 0 574 8 9 774 2 0 26 5 4 295 0 1 437 0 1 1098 0 14 469 0 1 444 0 1 80 0 3 79 chain 37450 chr15 102531392 + 23946624 23947113 MER9a3 513 - 5 513 72891 65 15 14 154 6 23 141 0 1 90 0 2 18 chain 544643 chr15 102531392 + 23959221 23965240 L1PA3long 6157 + 4 6157 2122 148 0 1 614 9 137 809 0 1 26 3 0 3546 0 7 864 chain 61316 chr15 102531392 + 23983919 23984594 L1PA3long 6157 - 0 675 52197 675 chain 4062 chr15 102531392 + 23991466 23991515 L1PA7 6471 - 7 56 206452 49 chain 27643 chr15 102531392 + 23992228 23992526 AluYa5 310 - 12 310 94230 298 chain 43281 chr15 102531392 + 24001990 24002574 LTR12_ 688 + 0 688 65078 256 32 33 68 0 103 228 chain 3489 chr15 102531392 + 24002627 24002665 MER21-int 1364 + 89 127 215538 38 chain 25882 chr15 102531392 + 24010810 24011460 THE1A 353 + 10 353 100519 8 0 1 91 1 0 123 309 2 118 chain 120810 chr15 102531392 + 24011518 24013051 THE1A-int 1579 + 58 1579 30756 84 4 5 58 0 1 475 17 6 418 7 9 189 5 2 21 0 1 46 4 0 131 1 2 73 chain 27712 chr15 102531392 + 24013051 24013392 THE1A 353 + 0 341 93997 84 0 1 25 1 0 231 chain 4700 chr15 102531392 + 24013419 24013512 LTR8 732 - 641 729 198531 19 9 7 38 10 7 17 chain 47288 chr15 102531392 + 24016022 24016546 L1PA3long 6157 + 5633 6156 60974 376 1 0 147 chain 120640 chr15 102531392 + 24047877 24049306 LTR12C 1709 + 0 1709 30820 126 2 1 80 0 1 442 0 278 184 1 0 6 1 0 106 0 4 481 chain 29717 chr15 102531392 + 24050578 24050915 L1PA3long 6157 - 2 341 85778 329 0 2 8 chain 65885 chr15 102531392 + 24064421 24065246 MER11D 897 - 0 897 50147 280 2 25 395 17 66 131 chain 4698 chr15 102531392 + 24077355 24077423 L1MB3 1562 - 64 129 198553 30 1 0 29 2 0 6 chain 4027 chr15 102531392 + 24089422 24089551 L1MB8 1703 - 167 294 206965 50 63 61 16 chain 4079 chr15 102531392 + 24126663 24126724 LTR12_ 688 - 508 610 206209 44 5 46 12 chain 72528 chr15 102531392 + 24145224 24146019 L1PA3long 6157 - 1 796 47255 795 chain 18522 chr15 102531392 + 24154375 24154616 AluSc 308 + 10 264 131440 37 4 10 66 1 0 3 1 0 108 0 9 21 chain 3904 chr15 102531392 + 24195874 24195920 L1MCa 1829 + 1577 1623 208785 46 chain 17266 chr15 102531392 + 24204425 24205194 L1PREC2 3366 - 307 729 134880 11 2 0 38 8 6 32 23 9 11 3 0 30 3 1 11 90 73 33 17 16 26 12 10 32 305 0 17 0 1 65 chain 29106 chr15 102531392 + 24207588 24208137 LTR12F 595 + 0 595 88523 54 0 4 33 25 124 151 0 1 12 49 51 104 71 11 50 chain 89766 chr15 102531392 + 24237871 24238875 L1PA3long 6157 - 5 1017 39732 327 1 2 93 0 3 439 0 4 144 chain 28998 chr15 102531392 + 24238875 24239190 L1PA3long 6157 + 4821 5136 88595 315 chain 23412 chr15 102531392 + 24252404 24252769 THE1B 368 - 2 368 113584 194 1 0 27 12 14 19 15 9 33 6 9 16 0 5 26 2 0 14 chain 76180 chr15 102531392 + 24255345 24256215 L1PA4 6152 - 0 876 45375 10 0 6 236 1 0 81 1 2 541 chain 25617 chr15 102531392 + 24263456 24263739 L1PA3long 6157 - 410 693 101638 283 chain 36948 chr15 102531392 + 24263739 24264144 L1PA3long 6157 + 5742 6147 73588 405 chain 19335 chr15 102531392 + 24275290 24275637 MER51B 395 - 15 395 129127 15 4 5 22 5 1 60 16 17 26 6 5 44 1 0 38 4 9 18 1 33 28 1 2 38 2 1 18 chain 2338 chr15 102531392 + 24277255 24277280 MER51B 395 - 328 353 234906 25 chain 528842 chr15 102531392 + 24288351 24294481 L1PA4 6152 + 10 6140 4320 762 5 7 264 0 2 766 0 2 523 6 0 292 0 1 541 0 1 518 2 0 205 21 15 442 0 4 529 2 0 419 1 5 832 chain 19837 chr15 102531392 + 24305170 24305390 L1PA3long 6157 + 5936 6156 127691 220 chain 102954 chr15 102531392 + 24308803 24310012 L1PA5 6144 - 6 1217 36004 135 27 24 684 0 1 4 7 11 352 chain 10118 chr15 102531392 + 24314496 24314712 MER50B 698 - 494 698 160004 34 18 19 66 45 34 7 2 0 44 chain 4031 chr15 102531392 + 24323293 24323396 LTR12C 1709 - 852 943 206916 20 1 0 6 0 2 21 16 18 17 15 0 7 chain 3366 chr15 102531392 + 24323408 24323447 LTR12C 1709 - 692 731 217753 39 chain 8984 chr15 102531392 + 24333115 24333215 L1PA4 6152 - 9 109 165691 100 chain 101276 chr15 102531392 + 24349083 24350418 L1PA3long 6157 - 2 1130 36449 776 0 1 8 208 0 343 chain 18861 chr15 102531392 + 24349874 24350075 AluYa5 310 - 2 203 130484 201 chain 83285 chr15 102531392 + 24383027 24383913 L1HS 6032 + 5147 6032 42212 12 1 0 873 chain 50153 chr15 102531392 + 24397812 24398397 LTR10C 591 - 0 591 58903 47 4 10 534 chain 215567 chr15 102531392 + 24399993 24402432 L1P1 4361 - 778 3213 18131 1253 6 0 155 0 2 1025 chain 16843 chr15 102531392 + 24424834 24425227 L1PB1 5432 - 15 374 136007 26 1 0 21 1 0 24 2 0 14 1 0 4 3 1 7 0 1 4 1 0 18 18 5 11 1 0 25 0 3 16 1 0 11 7 6 51 2 0 10 56 43 11 1 2 45 chain 2862 chr15 102531392 + 24441295 24441332 L1MCa 1829 + 1577 1614 227644 37 chain 50468 chr15 102531392 + 24461183 24461768 LTR10C 591 + 0 591 58669 538 0 6 47 chain 62185 chr15 102531392 + 24474283 24475097 MER11B 1079 - 275 1079 51812 31 14 8 170 13 12 324 14 11 248 chain 6972 chr15 102531392 + 24512514 24512598 L1PB3 3668 - 190 274 177672 84 chain 88830 chr15 102531392 + 24542306 24543503 MER11C 1089 - 10 1089 40071 479 0 1 21 28 9 357 0 6 123 106 0 83 chain 50811 chr15 102531392 + 24563478 24564069 LTR10C 591 + 0 591 58427 591 chain 92521 chr15 102531392 + 24579835 24580908 MER11C 1089 - 16 1089 38810 1073 chain 23208 chr15 102531392 + 24615968 24616434 L1PREC2 3366 - 307 730 114652 11 2 0 38 6 4 35 22 8 11 3 0 30 3 1 16 5 0 16 51 39 10 0 1 33 1 0 54 2 0 30 6 5 81 chain 7002 chr15 102531392 + 24618509 24618626 L1PB3 3668 - 190 306 177450 76 20 19 21 chain 7971 chr15 102531392 + 24636126 24636217 L1PA3long 6157 - 0 91 171216 91 chain 14750 chr15 102531392 + 24640494 24640780 L1PB1 5432 - 12 273 142105 29 1 0 21 1 0 24 2 0 14 1 0 4 3 1 7 0 1 4 1 0 18 14 1 16 4 3 40 1 0 11 7 6 51 2 0 10 chain 73264 chr15 102531392 + 24664254 24665099 L1PA4 6152 - 0 853 46901 6 0 4 103 0 1 34 0 1 19 0 1 518 0 1 165 chain 20849 chr15 102531392 + 24676025 24676449 L1PREC2 3366 - 322 726 124468 25 0 1 8 6 4 35 36 19 30 3 1 14 54 57 6 0 1 37 1 0 55 2 0 38 1 0 73 chain 35045 chr15 102531392 + 24719938 24720339 L1PA4 6152 - 4 403 76122 12 3 0 238 0 1 148 chain 7192 chr15 102531392 + 24729097 24729210 L1PB3 3668 - 194 306 176126 80 12 11 21 chain 90322 chr15 102531392 + 24750096 24751212 MER11C 1089 - 10 1089 39528 479 0 1 21 47 9 569 chain 9013 chr15 102531392 + 24758250 24758452 HERV35I-int 1679 - 125 323 165527 27 1 0 46 62 60 28 1 0 37 chain 28385 chr15 102531392 + 24768640 24768945 AluYb8 318 + 0 316 91643 74 0 11 231 chain 51492 chr15 102531392 + 24770861 24771452 LTR10C 591 + 0 591 57974 591 chain 92234 chr15 102531392 + 24787349 24788419 MER11C 1089 - 16 1088 38894 575 0 2 495 chain 15404 chr15 102531392 + 24813681 24813967 L1PB1 5432 - 12 273 140189 29 1 0 21 1 0 24 2 0 14 1 0 4 3 1 7 0 1 4 1 0 18 18 5 12 1 0 44 1 0 10 7 6 51 2 0 10 chain 12258 chr15 102531392 + 24834201 24834356 THE1D-int 1627 + 12 169 151169 77 0 2 78 chain 29699 chr15 102531392 + 24839330 24839640 AluYb8 318 - 8 318 85837 310 chain 29883 chr15 102531392 + 24847065 24847600 L1PA15 4387 - 31 549 85154 27 1 0 4 1 0 4 12 9 42 6 3 50 1 0 10 16 13 9 1 0 17 2 3 32 3 2 27 1 0 60 22 21 71 1 0 20 1 0 43 2 0 39 0 2 10 chain 3676 chr15 102531392 + 24871789 24871839 THE1C 375 + 11 63 212296 18 1 3 31 chain 21030 chr15 102531392 + 24871866 24872114 THE1C-int 1605 + 1348 1596 123812 248 chain 27262 chr15 102531392 + 24872124 24872501 THE1C 375 + 1 375 95394 63 0 1 39 24 21 55 0 1 9 1 0 160 1 0 25 chain 52907 chr15 102531392 + 24873670 24874583 MER4E1 777 + 0 769 57076 24 0 1 164 1 0 40 4 5 43 158 22 52 0 1 124 8 7 50 35 26 210 chain 2147 chr15 102531392 + 24874038 24874061 MER4E1 777 + 256 279 237187 23 chain 529673 chr15 102531392 + 24879074 24885176 L1PA5 6144 - 0 6141 4224 145 12 6 474 0 1 246 0 3 971 1 0 673 1 0 25 0 1 429 1 0 50 2 1 1548 0 3 1171 2 1 165 0 49 85 14 7 87 chain 8417 chr15 102531392 + 24885414 24885528 LTR38C 690 + 6 135 168742 98 1 16 15 chain 48640 chr15 102531392 + 24928014 24928593 LTR10C 591 + 0 591 59997 218 0 4 112 0 1 173 0 2 13 6 11 57 chain 222946 chr15 102531392 + 24932913 24935771 HERVH-int 3825 - 705 3825 17712 509 0 1 161 5 6 125 0 1 19 0 1 579 6 33 107 0 5 103 1 0 39 9 0 136 0 33 15 0 1 17 15 0 313 4 7 68 0 3 57 0 1 11 40 248 29 17 19 33 1 0 60 14 15 21 23 22 164 0 1 157 chain 102844 chr15 102531392 + 24937014 24938210 L1PA2 6032 - 1072 2271 36040 726 0 2 430 2 3 38 chain 80748 chr15 102531392 + 24938210 24939138 L1PA2 6032 + 4967 6032 43232 287 1 3 395 0 135 245 chain 32921 chr15 102531392 + 24939149 24939522 L1PA4 6152 + 5768 6143 79334 50 0 1 83 0 1 240 chain 268290 chr15 102531392 + 24951085 24954443 L1P2 5180 - 2 3375 15274 4 1 0 39 1 0 48 1 0 327 0 1 126 1 0 281 15 16 404 11 10 43 9 10 252 0 1 88 8 6 122 0 11 155 0 4 444 0 4 690 6 5 282 chain 4130 chr15 102531392 + 24954827 24954871 L1P2 5180 + 909 953 205490 44 chain 115455 chr15 102531392 + 24966862 24968229 L1PA7 6471 + 5092 6470 32624 261 0 1 152 1 0 117 0 6 343 0 1 58 0 4 435 chain 98283 chr15 102531392 + 24970712 24971793 L1PA4 6152 - 0 1082 37222 251 0 1 830 chain 13304 chr15 102531392 + 24975378 24975568 MER30 238 - 2 213 147068 45 0 3 55 8 0 7 4 30 71 chain 30072 chr15 102531392 + 24989349 24989705 L1PA4 6152 - 1 369 84593 156 1 0 69 0 12 96 0 1 34 chain 3646 chr15 102531392 + 24999893 24999936 Tigger5 388 - 153 196 212878 43 chain 8973 chr15 102531392 + 25004559 25004668 HSMAR1 1287 - 0 109 165759 109 chain 7062 chr15 102531392 + 25008686 25008804 L1MA2 4263 - 153 263 177011 5 1 0 38 16 9 58 chain 41909 chr15 102531392 + 25028249 25028759 MER9a3 513 - 0 513 66746 77 0 1 137 3 2 185 0 1 95 1 3 12 chain 7284 chr15 102531392 + 25061418 25061502 MSTB 430 + 0 84 175557 84 chain 17275 chr15 102531392 + 25065561 25065812 AluSp 311 + 7 269 134848 55 0 19 44 2 1 6 1 0 98 14 8 31 chain 26750 chr15 102531392 + 25077970 25078278 AluY 311 + 0 309 97162 19 2 1 111 0 2 176 chain 39480 chr15 102531392 + 25104741 25105270 MER41A 554 - 0 554 70047 43 6 22 240 0 1 120 11 18 67 0 1 42 chain 25038 chr15 102531392 + 25119187 25119480 AluY 311 + 8 306 104604 23 0 4 97 0 1 173 chain 19169 chr15 102531392 + 25141629 25141869 AluY 311 + 54 291 129617 30 8 5 202 chain 30940 chr15 102531392 + 25143892 25144332 LTR14B 630 - 0 630 82616 85 14 18 172 0 11 17 7 53 44 0 129 101 chain 5168 chr15 102531392 + 25146264 25146326 L1P4 1494 - 876 938 193361 62 chain 51844 chr15 102531392 + 25147630 25148290 LTR12_ 688 - 0 688 57726 226 0 10 70 4 8 8 10 0 173 0 24 169 chain 7438 chr15 102531392 + 25216782 25216883 MER85 139 + 25 139 174531 71 1 14 29 chain 19659 chr15 102531392 + 25228274 25228510 AluSx1 309 + 18 253 128225 227 1 0 8 chain 42388 chr15 102531392 + 25244383 25244973 PABL_A 660 - 1 660 66166 79 9 20 103 1 5 17 0 14 57 1 0 84 1 0 68 1 40 32 0 2 37 5 6 95 chain 22734 chr15 102531392 + 25286643 25286919 AluSp 311 + 0 295 116901 58 0 19 218 chain 68293 chr15 102531392 + 25347175 25347976 L1PA7 6471 - 1 803 49126 188 0 1 488 2 0 93 0 2 30 chain 4920 chr15 102531392 + 25366303 25366383 MER110 477 - 12 92 196055 15 6 7 31 1 0 27 chain 21660 chr15 102531392 + 25411701 25411979 AluSc 308 + 18 286 121539 113 11 1 154 chain 69910 chr15 102531392 + 25419048 25419994 MER11C 1089 - 28 1089 48432 174 0 1 79 14 33 175 64 65 267 0 3 112 1 92 60 chain 129073 chr15 102531392 + 25497416 25498905 LTR12C 1709 - 0 1709 28298 154 0 101 226 0 4 106 2 0 6 1 0 264 0 118 730 chain 526846 chr15 102531392 + 25500760 25506894 L1PA5 6144 + 0 6130 4515 119 1 15 106 0 1 359 5 9 560 9 0 134 0 1 142 0 4 8 30 2 2221 0 1 88 0 1 143 1 2 478 0 2 898 1 4 69 0 1 762 chain 30494 chr15 102531392 + 25537784 25538125 L1PA4 6152 + 5806 6152 83441 335 0 5 6 chain 36646 chr15 102531392 + 25538125 25538544 L1PA5 6144 + 5653 6074 74030 159 0 1 176 7 8 77 chain 3707 chr15 102531392 + 25538544 25538587 L1PA5 6144 + 6100 6143 211842 43 chain 121635 chr15 102531392 + 25543668 25545036 L1PA3long 6157 + 4786 6157 30501 434 0 10 411 14 6 177 0 1 332 chain 224951 chr15 102531392 + 25556996 25559527 L1PA5 6144 - 0 2536 17599 18 1 0 173 1 0 366 0 1 218 0 1 72 0 4 269 1 0 237 0 2 1175 chain 24394 chr15 102531392 + 25627178 25627492 AluYk4 311 + 0 306 108114 17 5 0 115 3 0 174 chain 22133 chr15 102531392 + 25655053 25655300 L1PA3long 6157 + 5909 6157 119657 100 1 2 146 chain 124618 chr15 102531392 + 25704430 25705804 L1PA3long 6157 - 0 1371 29501 138 7 0 705 0 4 524 chain 26714 chr15 102531392 + 25727153 25727453 L1PA7 6471 - 6 305 97276 156 1 0 143 chain 4214 chr15 102531392 + 25756649 25756700 MLT1D 503 + 80 131 204378 51 chain 47550 chr15 102531392 + 25774981 25775618 L1PB4 2604 - 52 688 60811 70 0 1 95 2 0 7 8 7 211 4 5 240 chain 14874 chr15 102531392 + 25785691 25786089 LTR35A 463 - 143 463 141703 7 2 0 13 22 12 16 38 33 30 2 0 40 2 0 39 17 3 11 11 0 32 26 11 13 1 0 10 13 1 36 4 0 13 chain 11571 chr15 102531392 + 25796442 25796622 L1MD2 1676 + 914 1095 154016 94 1 0 41 19 21 25 chain 48020 chr15 102531392 + 25811345 25812110 LTR12_ 688 - 0 688 60466 11 1 0 96 0 2 58 43 18 86 30 0 131 21 22 97 24 0 167 chain 46271 chr15 102531392 + 25830561 25831373 L1PREC2 3366 - 318 1097 61794 38 6 4 35 22 8 11 4 0 6 1 2 22 4 2 14 13 8 11 49 37 42 10 9 49 2 0 391 25 29 43 0 4 14 chain 70510 chr15 102531392 + 25862170 25862945 L1PA4 6152 - 0 775 48157 775 chain 36419 chr15 102531392 + 25881242 25881714 MER9B 498 + 0 493 74342 8 1 0 257 0 21 14 23 23 121 0 1 48 chain 264239 chr15 102531392 + 25882615 25885887 HERVK9-int 4720 + 334 3615 15474 844 7 2 490 2 1 98 7 4 249 30 30 84 4 8 114 0 13 237 2 3 1104 chain 37817 chr15 102531392 + 25886931 25887391 MER9B 498 + 14 498 72388 251 0 21 46 0 1 18 0 1 92 0 1 53 chain 51567 chr15 102531392 + 25901797 25902510 LTR17 781 + 0 754 57912 59 1 0 102 1 0 72 1 0 15 8 7 72 1 0 201 13 14 35 0 1 105 14 58 13 chain 25206 chr15 102531392 + 25940503 25940783 AluY 311 + 10 290 103705 280 chain 17958 chr15 102531392 + 25943526 25943794 Tigger2 2703 + 2441 2703 132963 135 0 2 85 18 12 9 5 3 16 chain 24626 chr15 102531392 + 25971916 25972232 AluY 311 + 0 310 106850 123 2 0 10 8 2 8 0 3 129 0 1 18 2 0 16 chain 40648 chr15 102531392 + 26002855 26004387 LTR10F 562 + 0 562 68373 38 0 2 143 972 0 49 0 3 26 17 16 198 2 0 87 chain 4800 chr15 102531392 + 26003720 26003774 LTR10F 562 + 111 165 197357 54 chain 2079 chr15 102531392 + 26003776 26003799 LTR10F 562 + 195 218 237893 23 chain 5902 chr15 102531392 + 26003940 26004008 LTR10F 562 + 111 179 186173 68 chain 46925 chr15 102531392 + 26006521 26007094 THE1C-int 1605 + 1018 1592 61286 132 0 1 160 0 1 276 1 0 4 chain 5640 chr15 102531392 + 26063129 26063205 HY4 93 + 0 84 188652 50 0 9 7 1 0 18 chain 17999 chr15 102531392 + 26101270 26101588 THE1D 372 + 0 332 132860 47 3 0 20 23 24 47 0 1 23 26 23 6 0 2 26 3 19 94 chain 40405 chr15 102531392 + 26123790 26124298 L1PA8 5853 + 5352 5853 68727 212 1 0 44 2 0 71 1 0 10 1 0 11 0 1 4 1 0 39 1 0 16 1 0 93 chain 40998 chr15 102531392 + 26166271 26166789 MER9a3 513 - 4 513 67909 73 2 3 175 1 0 147 0 1 22 11 0 68 0 2 14 1 0 4 chain 2599 chr15 102531392 + 26189237 26189287 LTR12D 1347 - 579 711 231705 28 6 88 16 chain 19685 chr15 102531392 + 26198585 26198843 AluSc 308 - 9 273 128142 23 0 6 119 0 3 7 8 5 101 chain 3324 chr15 102531392 + 26201556 26201658 MER53 195 - 66 171 218497 18 3 5 10 37 38 34 chain 16774 chr15 102531392 + 26221804 26222016 LTR1C 686 - 148 361 136188 32 4 5 176 chain 21920 chr15 102531392 + 26222824 26223108 AluSg7 307 - 13 287 120545 9 9 0 112 1 0 153 chain 40739 chr15 102531392 + 26227128 26227590 LTR2 463 - 0 463 68261 94 0 1 368 chain 23889 chr15 102531392 + 26231932 26232271 LTR7B 505 + 0 490 110965 105 1 11 55 1 0 4 8 77 26 1 75 88 14 13 36 chain 23537 chr15 102531392 + 26241988 26242322 THE1B 368 - 26 368 112922 29 0 2 4 1 0 23 0 1 41 1 0 10 1 0 18 0 4 9 0 3 29 1 0 52 5 6 23 0 1 87 chain 20108 chr15 102531392 + 26248518 26248789 AluSp 311 + 2 271 126798 123 2 0 81 1 7 6 6 0 52 chain 31974 chr15 102531392 + 26263762 26264192 MER57A1 433 - 0 433 80898 21 4 0 134 0 1 73 2 4 61 3 4 42 0 3 90 chain 13401 chr15 102531392 + 26267436 26267619 LTR51 675 - 232 415 146712 44 2 1 88 1 2 48 chain 30287 chr15 102531392 + 26270773 26271138 MER41A 554 - 24 389 83971 365 chain 58528 chr15 102531392 + 26274571 26275767 MER4E1 777 - 0 760 53682 218 10 18 75 456 16 143 5 1 289 chain 10400 chr15 102531392 + 26275816 26275974 MER4A 717 - 566 717 158694 73 7 8 24 8 0 46 chain 17838 chr15 102531392 + 26276005 26276212 MER4E1 777 - 553 760 133278 207 chain 10400 chr15 102531392 + 26276260 26276418 MER4A 717 - 566 717 158693 73 7 8 24 8 0 46 chain 126869 chr15 102531392 + 26285440 26287249 L1MA2 4263 - 123 1926 28843 15 3 1 11 2 0 8 1 0 29 0 1 4 0 2 11 7 0 15 17 15 63 11 9 150 12 9 135 1 0 74 12 8 14 1 0 321 4 13 276 0 1 45 1 3 31 2 1 173 5 0 58 2 0 84 0 4 116 0 2 5 0 6 90 chain 32218 chr15 102531392 + 26290082 26290724 LTR12_ 688 - 3 688 80492 59 12 145 21 29 32 73 111 20 39 50 48 248 chain 8118 chr15 102531392 + 26302486 26302582 LTR12C 1709 + 769 905 170390 49 0 40 47 chain 19154 chr15 102531392 + 26302593 26303336 LTR12C 1709 + 758 1514 129669 79 1 0 116 51 1 15 0 41 27 336 389 14 0 1 11 76 45 17 chain 62220 chr15 102531392 + 26311149 26311999 L1M1 2793 - 996 1848 51787 34 1 0 321 8 11 57 8 11 9 0 6 90 17 7 47 0 1 25 6 7 168 1 0 58 chain 9894 chr15 102531392 + 26312485 26312612 MER85 139 + 2 139 161102 87 0 10 40 chain 26273 chr15 102531392 + 26333166 26333505 MER57B1 401 - 58 401 98927 171 0 2 80 7 9 81 chain 185128 chr15 102531392 + 26333521 26336138 MER57-int 2662 - 29 2622 20488 6 0 1 26 16 11 8 1 0 22 4 1 10 1 0 5 1 0 25 2 0 12 14 2 68 18 12 28 1 0 66 1 0 68 0 1 27 5 4 254 0 4 64 4 1 201 1 0 141 6 0 124 0 1 4 1 0 32 2 0 33 0 2 60 2 1 55 0 1 104 0 1 69 24 43 201 15 16 64 13 16 423 2 0 133 0 10 21 0 1 42 1 0 8 58 40 20 chain 29329 chr15 102531392 + 26341151 26341541 MER57B1 401 - 0 401 87398 30 1 0 5 0 10 266 3 5 85 chain 19892 chr15 102531392 + 26342293 26342641 THE1D 372 - 0 354 127510 30 14 13 11 7 0 125 23 27 83 15 25 40 chain 24377 chr15 102531392 + 26346052 26346354 MER51E 476 + 0 301 108208 269 5 4 28 chain 34394 chr15 102531392 + 26351705 26352181 MER51E 476 - 2 471 77070 47 18 26 11 15 0 385 chain 3788 chr15 102531392 + 26359475 26359578 LTR12F 595 - 331 380 210555 24 54 0 25 chain 42003 chr15 102531392 + 26362309 26362859 LTR71B 605 - 58 605 66620 196 1 2 198 18 14 137 chain 2916 chr15 102531392 + 26387893 26387925 U2 167 - 135 167 226751 32 chain 297584 chr15 102531392 + 26396594 26400536 L1PA10 4194 - 33 3944 13547 11 1 0 34 9 6 1153 10 3 124 0 9 191 0 1 207 13 22 97 18 22 21 0 1 62 4 0 233 0 8 80 8 13 96 5 0 151 1 0 51 0 1 452 0 1 250 0 1 372 4 0 61 1 0 4 8 10 10 1 0 8 7 0 15 1 0 9 24 17 12 3 0 4 0 1 17 52 26 8 1 0 15 2 0 21 chain 33811 chr15 102531392 + 26461453 26461885 L1PA8 5853 - 801 1231 77662 43 2 0 7 1 0 125 7 8 247 chain 66307 chr15 102531392 + 26461885 26462724 L1PA8 5853 + 5022 5853 49944 124 2 1 417 1 0 46 2 0 69 1 0 9 1 0 12 1 0 40 2 1 19 1 0 76 1 2 15 chain 54407 chr15 102531392 + 26477419 26478071 PABL_A 660 - 0 660 56091 79 1 0 117 1 0 23 0 2 187 1 0 159 0 9 84 chain 4613 chr15 102531392 + 26478485 26478555 L1MA5A 2387 - 227 294 199480 8 2 0 45 1 0 14 chain 3732 chr15 102531392 + 26481694 26481759 L1MA4 2864 + 2507 2565 211424 8 6 0 4 1 0 46 chain 3051 chr15 102531392 + 26490158 26490226 LTR12F 595 - 504 548 223987 12 24 0 32 chain 67694 chr15 102531392 + 26512395 26513134 L1PA5 6144 + 5405 6144 49366 739 chain 10865 chr15 102531392 + 26524003 26524337 L1PB1 5432 - 6 309 156723 4 1 0 18 1 0 12 1 0 12 0 1 9 1 0 15 102 84 35 1 0 15 2 1 42 12 10 9 5 1 14 0 3 5 5 0 13 chain 22258 chr15 102531392 + 26535098 26535418 LOR1b 457 + 50 372 119085 18 0 1 77 21 0 25 1 9 97 1 16 4 1 0 75 chain 29806 chr15 102531392 + 26542358 26543140 LTR12C 1709 - 184 949 85416 20 194 290 12 168 0 82 0 1 4 2 48 231 1 0 61 0 9 7 chain 10887 chr15 102531392 + 26542608 26542751 LTR12C 1709 - 672 872 114595 16 0 41 48 0 1 4 3 18 72 chain 23846 chr15 102531392 + 26552314 26552619 THE1C-int 1605 - 1263 1583 111211 64 7 8 14 0 12 57 0 2 163 chain 32117 chr15 102531392 + 26559653 26560089 MER57A1 433 + 0 433 80656 279 4 5 84 12 8 57 chain 3886 chr15 102531392 + 26569939 26569983 LTR29 598 - 37 81 209073 44 chain 25586 chr15 102531392 + 26586365 26586826 MLT2A2 560 - 0 560 101799 86 30 21 40 9 118 59 69 68 168 chain 114724 chr15 102531392 + 26591449 26592952 THE1B-int 1605 + 0 1605 32872 12 6 8 138 1 0 274 8 33 49 0 1 6 1 0 24 0 7 385 0 1 191 1 69 350 1 0 47 0 1 9 chain 7409 chr15 102531392 + 26598113 26598408 Tigger4b 360 + 0 232 174722 17 8 0 8 0 1 6 170 112 77 0 2 9 chain 23870 chr15 102531392 + 26655359 26655656 AluY 311 + 12 304 111081 121 15 10 161 chain 4329 chr15 102531392 + 26657554 26657599 tRNA-Arg-CGY_ 50 + 0 45 202850 45 chain 21683 chr15 102531392 + 26659944 26660227 L1MA3 4352 + 3819 4094 121454 78 8 0 197 chain 8349 chr15 102531392 + 26670537 26670838 L1MA7 2200 - 1882 2180 169123 11 6 5 28 45 50 66 109 103 10 1 0 25 chain 6739 chr15 102531392 + 26687920 26687998 MER4B 649 - 537 615 179407 78 chain 9147 chr15 102531392 + 26716573 26716682 LTR23 429 - 29 138 164822 109 chain 520346 chr15 102531392 + 26776202 26782762 L1PA7 6471 + 3 6463 5118 225 0 15 14 21 2 16 5 1 130 1 2 152 6 7 242 0 4 561 0 1 359 4 9 12 1 0 75 5 6 431 3 0 81 0 1 283 0 1 233 1 0 23 0 4 287 1 3 12 0 1 369 55 12 216 0 3 185 0 1 18 1 0 574 1 0 4 1 0 291 21 2 551 12 7 105 1 0 15 0 1 50 1 0 17 32 0 8 4 0 512 1 2 318 7 0 6 chain 7312 chr15 102531392 + 26803638 26803721 MSTA 426 + 0 83 175352 83 chain 19632 chr15 102531392 + 26804006 26804315 MSTA 426 - 27 415 128306 36 0 1 57 0 1 68 38 114 14 11 12 85 chain 19986 chr15 102531392 + 26816977 26817215 AluSc 308 + 63 303 127185 105 0 1 23 0 1 110 chain 4401 chr15 102531392 + 26818833 26818884 L1MB8 1703 + 817 868 201909 51 chain 4632 chr15 102531392 + 26822839 26822895 Tigger3c 601 + 56 112 199284 56 chain 4779 chr15 102531392 + 26856711 26856812 LOR1-int 1871 + 1316 1417 197592 38 9 0 8 8 7 22 0 10 16 chain 239402 chr15 102531392 + 26862145 26864825 L1PA3long 6157 + 3411 6157 16803 257 4 92 14 22 1 1256 1 0 1126 chain 48593 chr15 102531392 + 26878573 26879134 LTR6B 557 + 0 557 60041 15 0 1 30 1 0 499 4 0 12 chain 2820 chr15 102531392 + 26898886 26898916 LTR8A 794 - 764 794 228461 30 chain 38102 chr15 102531392 + 26959441 26959913 MER4A1 472 - 0 472 71977 250 1 2 171 1 0 49 chain 24924 chr15 102531392 + 26963365 26963655 AluSp 311 - 22 311 105195 112 1 0 177 chain 31718 chr15 102531392 + 26965029 26965477 LTR7 482 + 0 475 81299 101 20 14 79 0 1 6 1 0 29 0 31 104 1 2 52 13 14 42 chain 4241 chr15 102531392 + 26970954 26971054 Tigger4 2445 - 40 130 204004 5 0 1 5 3 0 15 1 0 5 20 14 39 1 0 6 chain 28955 chr15 102531392 + 27021491 27021796 AluYa5 310 - 4 309 89198 305 chain 17498 chr15 102531392 + 27026465 27026731 LTR12C 1709 - 723 940 134274 32 49 1 116 1 0 68 chain 15036 chr15 102531392 + 27055542 27055756 L1PREC2 3366 + 2135 2346 141219 116 16 13 82 chain 6277 chr15 102531392 + 27057510 27057577 L1PA10 4194 + 4010 4077 182962 67 chain 59254 chr15 102531392 + 27064271 27065358 L1MA1 4479 + 3159 4190 53247 19 4 0 47 0 1 37 5 0 48 5 0 18 65 61 67 5 4 57 1 0 12 9 10 21 0 1 152 1 0 24 20 17 74 23 20 10 1 0 62 3 4 22 1 0 5 3 0 59 0 1 66 1 0 29 2 0 21 55 36 8 7 0 18 chain 36684 chr15 102531392 + 27073669 27074194 MER41C 542 - 0 528 73979 148 12 14 17 1 0 24 12 6 17 1 2 70 5 9 174 0 1 10 0 1 16 0 1 18 chain 133969 chr15 102531392 + 27075301 27076891 LTR12C 1709 - 0 1709 27216 481 0 4 106 3 1 5 1 0 264 0 118 730 chain 13290 chr15 102531392 + 27196520 27196699 MER4B 649 + 400 574 147130 20 5 0 154 chain 3169 chr15 102531392 + 27201745 27201848 L1MA3 4352 - 24 117 221576 14 6 5 21 40 31 22 chain 30123 chr15 102531392 + 27213440 27213756 AluYb8 318 - 2 318 84413 316 chain 34151 chr15 102531392 + 27236261 27236848 L1MA2 4263 - 1035 1616 77411 55 31 29 89 1 0 68 105 101 134 0 1 104 chain 127944 chr15 102531392 + 27248382 27249814 SVA_D 2077 - 12 1745 28583 612 0 223 143 0 1 42 8 11 81 0 36 13 2 0 153 0 40 378 chain 38444 chr15 102531392 + 27252524 27253123 L1PA15 4387 - 176 775 71521 26 1 0 45 12 11 25 9 8 164 6 5 25 8 14 25 1 0 17 6 7 6 4 0 14 8 6 79 0 4 118 chain 43655 chr15 102531392 + 27282469 27283033 LTR19B 566 - 0 566 64623 30 1 2 5 1 0 15 3 0 15 4 9 490 chain 36544 chr15 102531392 + 27296774 27297265 MER1A 529 - 5 499 74178 59 16 22 75 9 0 30 0 1 58 0 1 133 0 4 111 chain 21423 chr15 102531392 + 27319050 27319415 THE1B 368 - 0 368 122430 30 0 11 34 1 0 100 34 28 23 26 23 5 0 3 63 0 1 32 2 0 15 chain 537389 chr15 102531392 + 27433056 27439017 L1PA3long 6157 - 180 6157 3258 445 0 1 1371 0 3 1197 5 7 68 1 0 97 1 0 80 0 3 357 0 2 121 3 0 442 0 1 589 1 4 35 0 6 1148 chain 31912 chr15 102531392 + 27442812 27443203 L1P3 4156 - 246 642 80330 306 1 2 7 0 4 77 chain 92537 chr15 102531392 + 27443203 27444283 L1PA7 6471 + 5367 6451 38806 254 0 3 512 0 1 168 3 4 12 1 0 130 chain 38195 chr15 102531392 + 27461925 27462338 L1HS 6032 - 2 415 71840 413 chain 48054 chr15 102531392 + 27474185 27475353 L1PA14 3548 - 111 918 60441 22 1 0 17 1 0 5 1 0 15 4 2 21 17 13 11 2 1 103 8 6 32 21 7 18 0 2 25 1 0 6 2 0 11 17 10 37 339 0 62 0 18 40 2 0 11 13 10 101 0 3 38 0 1 101 10 5 53 chain 20138 chr15 102531392 + 27537148 27537372 L1PA7 6471 - 213 437 126716 224 chain 17732 chr15 102531392 + 27537381 27537585 L1PA7 6471 + 6265 6469 133614 204 chain 13642 chr15 102531392 + 27543846 27544003 L1PA7 6471 - 12 169 145810 157 chain 27769 chr15 102531392 + 27561249 27561563 AluYa5 310 + 0 308 93804 97 3 0 35 1 0 171 2 0 5 chain 17614 chr15 102531392 + 27622541 27622872 THE1B 368 - 4 368 133955 44 6 14 12 0 1 44 68 77 108 5 20 44 chain 20078 chr15 102531392 + 27670507 27670768 AluY 311 + 39 294 126891 94 13 7 154 chain 32548 chr15 102531392 + 27692765 27693148 L1PA7 6471 + 6078 6461 79947 383 chain 105478 chr15 102531392 + 27734030 27735265 L1PA7 6471 - 4 1246 35379 137 0 1 433 0 2 194 0 2 82 1 0 13 0 4 309 1 0 65 chain 6810 chr15 102531392 + 27770879 27770957 L1PA8A 6298 - 236 315 178873 61 0 1 17 chain 9045 chr15 102531392 + 27777445 27777574 LTR9B 643 + 445 561 165347 59 8 0 16 5 0 41 chain 24394 chr15 102531392 + 27789967 27790244 L1PA5 6144 + 5866 6144 108112 135 0 1 142 chain 13456 chr15 102531392 + 27812688 27812958 L1PB1 5432 - 10 274 146497 18 1 0 8 5 4 22 1 0 8 0 1 15 7 20 18 16 6 6 2 0 16 1 0 42 2 1 16 2 1 52 2 0 10 chain 29274 chr15 102531392 + 27852130 27852442 AluYb8 318 - 6 318 87675 312 chain 5889 chr15 102531392 + 27854085 27854270 LTR12 884 - 507 613 186286 39 86 2 23 1 0 8 4 10 24 chain 293067 chr15 102531392 + 27885066 27888909 L1PA10 4194 + 244 4104 13822 6 1 0 21 2 0 15 1 0 8 58 32 9 2 0 19 1 0 9 1 0 7 1 0 9 1 0 13 20 11 72 7 9 632 6 31 121 0 1 106 0 7 82 0 1 185 0 2 183 0 3 222 0 2 131 0 2 26 0 4 278 0 1 152 1 0 93 0 1 321 0 10 222 0 9 20 0 1 28 3 0 35 4 0 123 5 6 361 1 0 196 1 0 22 chain 12585 chr15 102531392 + 27901245 27901405 LTR12C 1709 - 672 952 149904 40 0 121 39 1 0 80 chain 8977 chr15 102531392 + 27908399 27908558 L1MA8 2339 + 1661 1822 165730 49 34 35 43 0 1 33 chain 41892 chr15 102531392 + 27908615 27909100 LTR15 485 - 0 485 66767 485 chain 22900 chr15 102531392 + 27939162 27939733 MSTA 426 + 20 413 116108 70 9 10 91 209 51 8 22 0 80 6 7 76 chain 29877 chr15 102531392 + 27939840 27940339 LTR10D 510 + 0 510 85179 77 0 3 14 1 9 43 0 1 47 83 84 137 13 11 84 chain 8465 chr15 102531392 + 27954728 27954825 THE1D 372 + 274 372 168488 37 0 1 60 chain 23606 chr15 102531392 + 27959012 27959647 LTR12_ 688 + 2 556 112548 31 0 2 203 0 3 6 115 116 12 6 10 18 9 10 11 33 36 17 134 39 40 chain 5667 chr15 102531392 + 27971843 27971909 L1PA5 6144 + 6078 6144 188412 66 chain 39635 chr15 102531392 + 27990191 27990723 MER41C 542 - 0 527 69846 179 1 0 24 12 6 17 2 3 263 0 1 34 chain 38539 chr15 102531392 + 28012520 28013030 LTR12 884 + 0 533 71383 26 1 0 30 10 10 53 0 25 196 1 2 36 2 0 155 chain 24273 chr15 102531392 + 28076165 28076452 AluSc5 308 + 14 301 108826 287 chain 21684 chr15 102531392 + 28097345 28097581 L1PA3long 6157 - 1139 1375 120761 236 chain 105423 chr15 102531392 + 28097581 28098724 L1PA3long 6157 + 5008 6152 35394 142 0 1 1001 chain 145189 chr15 102531392 + 28125443 28127335 L1PA10 4194 - 44 1929 25292 34 15 12 22 2 0 105 3 0 63 2 1 299 3 6 121 7 4 53 2 1 305 3 0 139 13 14 27 7 0 205 1 0 111 1 2 214 4 16 131 chain 26746 chr15 102531392 + 28132037 28132404 THE1B 368 + 0 368 97177 12 3 1 25 1 6 64 5 4 9 0 1 78 3 1 167 chain 6289 chr15 102531392 + 28132740 28132837 THE1B 368 + 280 368 182893 26 10 1 61 chain 78141 chr15 102531392 + 28138249 28139335 MER11A 1151 + 0 1146 44443 55 0 99 22 8 0 54 1 0 64 4 0 149 0 1 94 0 1 145 0 1 150 25 1 11 8 15 21 18 0 37 0 1 60 6 7 78 5 9 71 chain 43620 chr15 102531392 + 28140426 28142041 THE1B-int 1605 + 0 629 64661 111 26 29 234 1014 0 58 7 32 165 chain 3880 chr15 102531392 + 28191351 28191393 MER39B 650 + 3 45 209171 42 chain 13806 chr15 102531392 + 28198935 28199257 L1PB1 5432 - 19 318 145244 9 1 0 8 6 5 21 1 0 9 1 0 11 29 24 15 9 0 15 3 0 16 2 1 43 1 0 17 1 0 32 12 19 9 5 1 14 1 0 9 1 0 21 chain 23316 chr15 102531392 + 28203087 28203356 L1PA5 6144 + 5874 6143 114124 269 chain 89285 chr15 102531392 + 28206072 28207093 L1PA7 6471 + 5434 6459 39893 180 0 3 519 0 1 322 chain 77155 chr15 102531392 + 28218321 28219353 L1PB3 3668 - 799 1834 44881 32 0 4 142 3 5 21 1 0 282 3 0 129 11 12 135 4 0 141 0 2 10 4 6 114 chain 18172 chr15 102531392 + 28239223 28239543 MER1B 344 + 0 339 132402 16 27 42 23 19 21 114 4 0 42 17 23 58 chain 68294 chr15 102531392 + 28242467 28243204 L1PA3long 6157 - 1143 1880 49125 737 chain 104735 chr15 102531392 + 28243207 28244344 L1PA3long 6157 + 5009 6146 35561 1137 chain 50225 chr15 102531392 + 28253308 28253902 LTR10C 591 + 0 591 58847 37 0 1 221 4 0 332 chain 2547 chr15 102531392 + 28257705 28257748 LTR10C 591 + 111 151 232509 27 4 1 12 chain 158292 chr15 102531392 + 28314588 28316328 SVA_F 1814 + 12 1814 23556 876 1 113 90 50 0 723 chain 29699 chr15 102531392 + 28321711 28322021 AluYb8 318 + 0 310 85833 310 chain 27234 chr15 102531392 + 28327190 28327630 LTR12_ 688 + 0 554 95484 25 1 0 107 6 7 99 1 0 10 51 63 40 0 103 100 chain 87392 chr15 102531392 + 28333643 28334700 MER11B 1079 - 0 1079 40611 11 5 4 295 0 2 55 1 0 378 1 18 86 0 5 225 chain 538999 chr15 102531392 + 28399917 28406020 L1PA5 6144 - 4 6144 2991 255 1 0 39 0 1 544 0 4 763 0 8 173 0 4 357 1 0 5 0 3 22 10 12 266 0 4 433 0 4 342 0 5 1476 0 5 542 1 0 873 chain 4726 chr15 102531392 + 28431233 28431296 L1MB3 1562 + 1486 1549 198207 38 1 0 20 0 1 4 chain 24967 chr15 102531392 + 28485286 28485594 AluY 311 + 4 311 104971 128 0 1 159 2 0 19 chain 7851 chr15 102531392 + 28523023 28523119 MER2 342 - 49 145 171987 96 chain 19260 chr15 102531392 + 28524146 28524425 AluSp 311 - 16 301 129345 8 5 0 38 4 14 97 1 0 6 1 0 43 1 5 36 1 0 38 chain 3517 chr15 102531392 + 28540930 28541095 MER58B 340 + 159 323 215117 4 0 1 19 82 82 12 16 14 32 chain 54464 chr15 102531392 + 28549858 28550463 L1PA2 6032 - 0 603 56056 15 0 3 137 5 0 448 chain 71833 chr15 102531392 + 28550463 28551243 L1PA2 6032 + 4657 5438 47545 605 0 1 175 chain 20166 chr15 102531392 + 28576280 28576556 AluY 311 + 30 302 126627 103 15 14 148 3 0 7 chain 59859 chr15 102531392 + 28684302 28685036 L1PA7 6471 - 12 745 52894 137 0 6 6 5 0 171 2 0 413 chain 60330 chr15 102531392 + 28722588 28723322 L1PA7 6471 + 5726 6459 52664 414 2 0 167 0 1 151 chain 46659 chr15 102531392 + 28851370 28852078 L1MA3 4352 + 1504 2208 61488 24 1 0 47 10 7 28 17 16 25 1 0 120 2 1 10 1 2 5 0 3 99 1 0 89 2 1 77 5 6 144 chain 23365 chr15 102531392 + 28892319 28892935 MER68-int 777 - 91 644 113841 35 46 33 14 0 1 15 1 0 6 5 0 35 2 0 83 181 147 20 10 0 115 2 3 46 chain 23782 chr15 102531392 + 28904489 28904779 AluY 311 + 11 302 111579 119 1 2 170 chain 5349 chr15 102531392 + 28905108 28905243 MER2 342 - 1 138 191550 24 54 56 57 chain 22140 chr15 102531392 + 28921053 28921338 AluY 311 + 18 303 119618 108 0 1 14 5 6 149 2 0 7 chain 91643 chr15 102531392 + 28934753 28935818 MER11C 1089 + 0 1073 39074 225 0 5 356 12 13 394 0 2 78 chain 42594 chr15 102531392 + 29001960 29002459 MER9a1 513 - 0 513 65906 120 8 10 330 0 12 41 chain 22984 chr15 102531392 + 29006433 29006719 AluY 311 + 0 291 115694 138 6 11 142 chain 81444 chr15 102531392 + 29032224 29033169 L1PA4 6152 - 1 945 42992 147 0 1 191 1 0 226 6 5 374 chain 76205 chr15 102531392 + 29062853 29063684 L1PA4 6152 - 12 844 45358 767 0 1 64 chain 2768 chr15 102531392 + 29080912 29080944 MER58B 340 - 17 49 229218 32 chain 14187 chr15 102531392 + 29089565 29089730 AluSp 311 - 1 166 143927 165 chain 150197 chr15 102531392 + 29094105 29095843 SVA_D 2077 - 18 2077 24586 8 0 3 507 0 225 267 4 58 30 0 1 10 12 54 311 20 23 27 2 0 522 5 0 13 chain 3089 chr15 102531392 + 29220016 29220050 L1MCa 1829 - 965 999 223098 34 chain 23656 chr15 102531392 + 29252960 29253253 AluSp 311 - 9 303 112273 30 12 13 251 chain 26407 chr15 102531392 + 29305473 29305783 AluYk4 311 - 3 311 98386 190 2 0 118 chain 4549 chr15 102531392 + 29323526 29323602 MLT1B 390 - 72 149 200227 47 12 14 4 1 0 12 chain 17862 chr15 102531392 + 29323802 29324091 LTR12F 595 - 266 595 133210 5 0 2 74 5 71 33 3 1 22 25 0 16 7 2 16 0 4 83 chain 31679 chr15 102531392 + 29411474 29411812 L1HS 6032 + 5691 6029 81357 338 chain 8555 chr15 102531392 + 29440676 29440781 MER2 342 - 105 210 167989 105 chain 15238 chr15 102531392 + 29445214 29445464 L1MD1 2063 - 292 526 140669 49 4 1 32 1 0 34 14 5 11 3 0 102 chain 18869 chr15 102531392 + 29451494 29452051 LTR12C 1709 - 149 940 130465 21 1 0 25 0 4 12 1 0 8 304 537 116 1 0 68 chain 406651 chr15 102531392 + 29455092 29460522 L1PB1 5432 + 31 5424 9892 17 12 11 342 3 0 5 1 2 200 14 10 81 0 4 519 0 1 172 1 0 6 3 0 2 11 0 193 0 6 38 11 16 466 0 7 176 11 10 106 0 1 73 9 0 235 0 1 111 3 0 12 21 32 44 1 0 518 0 1 284 0 3 343 6 7 74 0 1 467 3 0 23 0 3 383 10 5 53 8 7 12 1 0 20 1 0 12 17 12 9 2 0 53 2 1 10 7 6 44 45 28 18 3 1 4 1 0 14 10 8 16 1 0 21 1 0 13 1 0 16 1 0 4 chain 25605 chr15 102531392 + 29474330 29474626 AluYk4 311 - 15 311 101705 191 1 0 88 0 1 16 chain 27288 chr15 102531392 + 29480462 29480819 L1PA8 5853 - 0 352 95313 93 1 0 19 2 1 45 0 1 6 1 0 9 1 0 19 0 2 49 2 0 47 1 0 47 1 0 14 chain 63176 chr15 102531392 + 29494686 29495783 L1PA8 5853 - 0 781 51367 93 1 0 19 2 1 61 1 0 71 2 0 44 1 0 322 0 1 21 312 0 91 1 0 45 0 2 10 chain 26787 chr15 102531392 + 29499492 29499948 LTR12F 595 - 33 594 97021 86 85 84 84 3 2 91 14 121 93 chain 95735 chr15 102531392 + 29503671 29504974 L1PBa 3878 - 178 1473 37886 38 0 1 349 0 1 44 1 2 43 3 0 173 0 1 43 0 5 6 11 6 149 3 1 130 0 3 61 20 10 229 chain 85256 chr15 102531392 + 29504974 29505926 L1PA5 6144 - 979 1933 41439 681 0 1 169 0 1 102 chain 84604 chr15 102531392 + 29505926 29506902 L1PA5 6144 + 5162 6144 41602 135 8 12 9 2 3 541 0 1 281 chain 28760 chr15 102531392 + 29507388 29507745 MLT2A1 477 + 0 354 90071 165 18 15 174 chain 40264 chr15 102531392 + 29509085 29509615 LTR6B 557 - 26 557 68922 30 0 1 7 1 0 17 7 6 6 1 0 35 2 1 23 0 4 45 0 2 307 2 0 47 chain 62743 chr15 102531392 + 29510543 29511321 L1PB1 5432 + 3840 4626 51565 619 11 19 148 chain 29123 chr15 102531392 + 29511327 29511717 L1PB1 5432 + 4626 5009 88441 110 0 1 5 2 1 72 8 0 112 0 1 81 chain 6117 chr15 102531392 + 29511717 29511795 L1PB1 5432 + 5010 5088 184295 78 chain 10237 chr15 102531392 + 29511869 29512031 L1PB1 5432 + 5114 5266 159440 24 1 0 9 1 0 9 6 2 9 2 0 53 2 1 16 1 0 29 chain 3512 chr15 102531392 + 29512126 29512169 L1PB1 5432 + 5344 5386 215181 26 1 0 16 chain 12553 chr15 102531392 + 29516745 29516913 LTR12C 1709 - 732 940 150032 108 1 41 59 chain 22705 chr15 102531392 + 29538616 29538919 AluSq2 311 + 0 296 117054 125 19 15 113 3 0 43 chain 13291 chr15 102531392 + 29543885 29544057 MER30 238 + 49 228 147125 58 5 12 109 chain 22872 chr15 102531392 + 29556084 29556372 AluSc8 310 + 4 298 116220 46 3 7 48 1 0 27 0 3 163 chain 34617 chr15 102531392 + 29563590 29564068 LTR2B 499 + 9 499 76729 4 0 1 60 3 0 31 0 19 117 18 13 54 0 1 8 2 1 181 chain 40547 chr15 102531392 + 29565742 29566269 MLT2A2 560 + 16 560 68522 17 0 5 145 1 0 219 0 11 71 7 9 67 chain 3399 chr15 102531392 + 29610479 29610517 Tigger1 2417 + 2210 2248 217091 38 chain 24109 chr15 102531392 + 29619511 29619814 AluY 311 + 0 298 109697 37 5 0 261 chain 11521 chr15 102531392 + 29643326 29643488 Tigger3a 397 - 95 255 154213 27 2 0 52 0 6 7 5 0 64 1 0 4 chain 47314 chr15 102531392 + 29679003 29679524 L1PA5 6144 - 1801 2322 60842 521 chain 160623 chr15 102531392 + 29679524 29681316 L1PA5 6144 + 4333 6132 23248 566 0 1 449 0 3 180 0 1 151 0 2 446 chain 5876 chr15 102531392 + 29692157 29692231 Tigger2a 444 - 367 442 186421 69 0 1 5 chain 347567 chr15 102531392 + 29705968 29709842 L1PA4 6152 + 2252 6136 11681 913 0 1 296 4 1 197 0 1 229 0 2 462 0 4 998 0 3 563 0 2 212 chain 29521 chr15 102531392 + 29785329 29785636 AluYa5 310 - 3 310 86566 307 chain 476760 chr15 102531392 + 29797352 29803393 L1PA7 6471 + 693 6459 7837 521 3 0 341 0 1 215 1 5 445 3 4 108 0 1 63 0 1 87 1 0 96 0 1 517 5 9 188 0 2 38 1 0 212 1 5 526 0 1 103 2 0 53 1 0 154 0 1 564 2 1 78 1 0 219 0 1 348 0 4 481 0 3 4 294 0 218 1 0 113 0 1 33 chain 22796 chr15 102531392 + 29802746 29803028 AluY 311 + 18 297 116593 13 0 1 93 1 0 112 4 1 59 chain 53958 chr15 102531392 + 29816646 29817357 LTR17 781 - 24 781 56396 15 0 1 22 2 24 48 0 26 294 1 0 44 0 1 27 5 4 70 3 2 118 1 0 61 chain 13681 chr15 102531392 + 29850997 29851225 Tigger2 2703 + 2413 2658 145668 134 43 60 51 chain 9286 chr15 102531392 + 29869350 29869517 L1MB3 1562 + 939 1126 164136 34 1 0 48 31 52 53 chain 30929 chr15 102531392 + 29900079 29900459 MLT2A1 477 - 92 477 82637 61 1 0 150 1 5 26 0 1 67 0 1 74 chain 8788 chr15 102531392 + 29949199 29949944 LTR12F 595 - 28 451 166723 34 0 2 26 581 235 55 25 47 24 chain 18995 chr15 102531392 + 29950261 29950623 THE1C 375 + 0 355 130123 87 0 1 17 8 9 62 0 2 8 68 63 26 19 13 67 chain 42291 chr15 102531392 + 29955579 29956075 L1PA5 6144 + 5646 6142 66279 338 7 7 151 chain 53474 chr15 102531392 + 29972647 29973448 Charlie3 2679 - 5 2560 56705 15 1 0 47 10 9 46 0 6 334 44 1733 23 0 62 163 4 0 60 0 2 15 0 1 39 chain 34731 chr15 102531392 + 29978612 29979151 LTR12F 595 + 0 570 76570 98 0 41 38 17 8 21 0 9 172 17 3 19 35 37 101 0 2 21 chain 12576 chr15 102531392 + 30047310 30047509 Tigger3a 397 + 161 377 149933 4 1 0 12 18 20 136 4 20 24 chain 13908 chr15 102531392 + 30074405 30075020 L1PREC2 3366 + 2726 3214 144890 25 6 4 53 1 0 34 0 1 7 1 0 4 3 0 13 29 21 17 5 2 13 4 2 29 37 20 35 281 190 18 chain 28161 chr15 102531392 + 30093666 30093963 AluYa5 310 - 13 310 92425 297 chain 13176 chr15 102531392 + 30093985 30094193 MER30 238 - 0 238 147566 36 1 0 3 3 0 72 4 16 57 16 38 16 chain 90187 chr15 102531392 + 30108996 30110211 L1PA8 5853 + 4678 5846 39582 214 0 3 33 2 1 74 11 12 55 27 1 415 2 0 78 1 0 46 2 0 69 8 0 8 4 0 4 5 0 15 0 1 10 1 0 23 2 1 19 1 0 86 chain 21645 chr15 102531392 + 30129507 30129782 AluSp 311 + 28 301 121592 262 2 0 11 chain 7026 chr15 102531392 + 30153600 30153699 MER85 139 - 0 100 177287 34 8 9 57 chain 13146 chr15 102531392 + 30168367 30168859 MER30 238 + 31 238 147658 73 317 29 57 0 3 45 chain 119038 chr15 102531392 + 30188709 30190269 THE1B-int 1605 + 17 1598 31392 57 1 0 97 2 1 258 1 26 106 5 6 75 3 0 7 5 0 102 6 15 195 6 2 171 25 24 383 3 4 52 chain 44327 chr15 102531392 + 30223881 30224427 MER41A 554 - 0 554 63792 72 0 1 7 0 5 282 0 1 60 1 2 124 chain 14117 chr15 102531392 + 30253534 30253684 AluYb8 318 - 2 152 144157 150 chain 24222 chr15 102531392 + 30272205 30272500 AluSc8 310 + 8 306 109079 124 0 3 171 chain 7814 chr15 102531392 + 30291257 30291454 L1PB1 5432 - 5 178 172220 5 2 0 12 13 12 7 1 0 21 1 0 24 2 0 14 9 6 18 25 12 15 1 0 27 chain 24195 chr15 102531392 + 30301530 30301821 AluSg7 307 - 10 300 109251 143 6 5 142 chain 67915 chr15 102531392 + 30310103 30311913 L1PA8 5853 - 1 2877 21227 4 0 1 87 1 0 16 1 0 62 1 0 74 2 0 46 1 0 429 54 4 34 0 1 39 3 0 43 22 20 170 0 1 153 0 1120 86 2 3 72 1 0 59 0 1 95 0 3 253 chain 181977 chr15 102531392 + 30311927 30314214 L1PA8 5853 + 707 3002 20788 379 0 1 30 0 1 82 26 22 50 0 12 56 8 9 225 11 6 164 0 1 6 0 1 265 2 1 373 0 1 458 9 10 137 1 0 5 chain 22926 chr15 102531392 + 30314216 30314827 L1PA8 5853 - 5147 5745 21227 98 2 0 5 0 4 297 12 0 56 3 0 138 chain 36369 chr15 102531392 + 30343712 30344223 L1PB4 2604 - 53 562 74401 29 0 1 123 20 14 306 1 0 7 1 5 24 chain 25042 chr15 102531392 + 30344766 30345096 L1P4 1494 + 420 754 104585 40 1 0 82 7 12 200 chain 26896 chr15 102531392 + 30348915 30349205 AluYa5 310 - 0 290 96640 290 chain 5196 chr15 102531392 + 30355572 30355643 MLT2C2 476 + 38 108 193079 57 1 0 13 chain 52716 chr15 102531392 + 30358364 30358949 L1PA3long 6157 - 0 587 57179 70 0 2 515 chain 104381 chr15 102531392 + 30358949 30360087 L1PA3long 6157 + 4413 5551 35642 1138 chain 3589 chr15 102531392 + 30364317 30364360 L1MB7 1623 - 194 236 213831 7 1 0 35 chain 64999 chr15 102531392 + 30391139 30391849 L1PA3long 6157 + 5446 6157 50576 671 0 1 39 chain 10465 chr15 102531392 + 30397783 30397930 MER1A 529 + 339 487 158411 120 11 12 16 chain 11910 chr15 102531392 + 30397995 30398187 L1MB3 1562 - 214 406 152553 119 28 28 45 chain 15461 chr15 102531392 + 30403935 30404161 MER30 238 - 0 238 140015 80 0 6 20 5 0 9 4 0 7 8 23 93 chain 5949 chr15 102531392 + 30404402 30404498 U8 134 + 0 98 185682 44 13 15 39 chain 37189 chr15 102531392 + 30411884 30412377 LOR1a 498 - 7 498 73249 8 1 0 273 1 0 56 1 0 105 11 12 37 chain 126049 chr15 102531392 + 30449429 30450852 L1PA4 6152 - 0 1452 29080 6 0 5 383 1 0 364 0 1 192 0 24 477 chain 63117 chr15 102531392 + 30450852 30451552 L1PA4 6152 + 4004 4704 51286 700 chain 45503 chr15 102531392 + 30478687 30479205 L1PA4 6152 - 0 516 62492 6 3 0 142 0 1 367 chain 3396 chr15 102531392 + 30489233 30489275 MLT2A2 560 - 518 560 217166 42 chain 24617 chr15 102531392 + 30501338 30501632 AluSg7 307 + 10 303 106905 67 1 0 226 chain 23774 chr15 102531392 + 30523519 30523853 L1PA8 5853 - 0 327 111633 92 2 1 17 8 7 44 16 14 70 2 0 44 1 0 38 chain 56102 chr15 102531392 + 30529464 30530341 L1PB 1623 - 48 893 55070 22 52 29 9 1 0 12 10 7 8 3 0 4 1 0 29 3 2 7 1 0 87 1 0 4 0 1 44 0 4 9 11 1 403 4 9 50 3 6 93 1 0 5 chain 545195 chr15 102531392 + 30532571 30538595 L1PA3long 6157 - 5 6153 2051 2159 3 1 523 0 1 2564 8 136 234 4 0 381 0 1 148 chain 40301 chr15 102531392 + 30546166 30546604 L1PA3long 6157 - 4 442 68879 438 chain 9964 chr15 102531392 + 30546604 30546711 U6 107 - 0 107 160756 107 chain 136429 chr15 102531392 + 30557242 30559822 L1PBa 3878 + 29 1928 26758 9 3 0 4 0 1 5 3 0 12 29 21 4 1 0 5 2 0 10 1 0 45 78 26 42 1 0 7 11 0 17 2 0 78 0 1 57 1 2 25 21 35 89 1 0 171 0 1 21 0 1 223 0 1 4 1 0 668 3 0 111 612 0 203 chain 11120 chr15 102531392 + 30576376 30576503 L1PA2 6032 + 5903 6030 155730 127 chain 6252 chr15 102531392 + 30581855 30582083 MLT1C 463 - 274 463 183153 39 1 0 25 59 0 10 69 90 25 chain 105948 chr15 102531392 + 30619773 30620970 L1PA4 6152 - 9 1203 35270 845 3 0 349 chain 21069 chr15 102531392 + 30626337 30626662 THE1D 372 + 0 357 123666 65 0 10 20 6 17 43 28 39 53 0 1 90 5 4 15 chain 554639 chr15 102531392 + 30633413 30639560 L1PA3long 6157 - 11 6153 867 28 0 1 167 0 3 595 1 2 36 0 4 2037 0 3 1462 1 3 516 21 1 96 0 3 211 0 1 138 0 1 304 4 0 530 chain 6080 chr15 102531392 + 30677196 30677292 U8 134 - 36 134 184569 39 13 15 44 chain 11104 chr15 102531392 + 30677533 30677759 MER30 238 + 0 238 155791 16 42 42 36 6 5 8 4 0 9 5 16 20 0 6 80 chain 64650 chr15 102531392 + 30689801 30690514 L1PA3long 6157 - 0 711 50723 15 3 0 24 0 1 671 chain 57662 chr15 102531392 + 30741800 30742577 MER4E1 777 + 0 777 54153 24 0 1 40 2 1 105 4 3 19 1 0 48 1 0 7 4 5 73 5 6 19 0 1 194 2 0 221 0 2 8 chain 36675 chr15 102531392 + 30747867 30748352 MER1A 529 - 0 483 73994 55 20 18 410 chain 26264 chr15 102531392 + 30758759 30759070 AluY 311 + 1 306 98961 125 6 0 180 chain 24166 chr15 102531392 + 30765993 30766278 AluSp 311 - 15 300 109394 285 chain 27828 chr15 102531392 + 30786192 30786547 MER57A1 433 - 70 433 93594 75 1 2 198 0 4 53 0 3 28 chain 9548 chr15 102531392 + 30792445 30792565 MER30 238 + 119 235 162841 7 4 0 109 chain 45171 chr15 102531392 + 30792701 30793311 PRIMA4_LTR 623 + 0 623 62851 91 0 1 96 4 0 29 13 21 8 0 1 67 0 2 16 1 0 10 1 2 44 1 2 24 0 4 205 chain 36009 chr15 102531392 + 30793730 30794207 LTR2B 499 - 0 486 74883 106 4 3 267 0 19 33 9 0 58 chain 14331 chr15 102531392 + 30821766 30821974 MER30 238 - 0 238 143458 40 3 0 30 1 0 41 4 20 74 0 18 15 chain 64231 chr15 102531392 + 30860135 30860844 L1PA3long 6157 + 5446 6157 50902 38 0 1 632 0 1 39 chain 9960 chr15 102531392 + 30866762 30866909 MER1A 529 + 339 487 160778 114 17 18 16 chain 11910 chr15 102531392 + 30866974 30867166 L1MB3 1562 - 214 406 152552 119 28 28 45 chain 15558 chr15 102531392 + 30872921 30873147 MER30 238 - 0 238 139707 80 0 6 20 5 0 9 4 0 7 7 22 94 chain 6080 chr15 102531392 + 30873388 30873484 U8 134 + 0 98 184568 44 13 15 39 chain 37292 chr15 102531392 + 30880869 30881362 LOR1a 498 - 7 498 73092 8 1 0 273 1 0 56 1 0 105 11 12 37 chain 3980 chr15 102531392 + 30910337 30910380 MER5A1 166 - 50 93 207689 43 chain 4447 chr15 102531392 + 30911307 30911368 Tigger3b 1229 + 476 536 201381 4 1 0 56 chain 23807 chr15 102531392 + 30921476 30921763 AluY 311 + 12 290 111431 97 10 0 89 0 1 91 chain 5058 chr15 102531392 + 30965962 30966044 HY3 101 + 10 100 194552 18 8 12 21 0 4 35 chain 26540 chr15 102531392 + 30977198 30977486 AluYf4 310 + 8 296 97880 288 chain 60529 chr15 102531392 + 30979941 30980647 L1PA7 6471 + 5758 6464 52565 549 16 16 141 chain 386937 chr15 102531392 + 31028914 31034199 L1PB1 5432 + 65 5424 10551 7 9 0 329 1 0 108 2 0 361 1 0 16 1 0 307 53 62 90 8 9 41 1 0 7 16 1 319 1 0 197 0 3 179 0 1 188 0 1 54 5 7 140 1 0 31 0 1 94 1 2 19 18 0 234 0 38 264 21 112 78 1 2 15 0 1 99 0 4 506 1 0 617 8 15 15 0 1 164 15 11 231 0 1 5 1 0 20 0 1 20 23 21 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 44 1 0 15 3 0 8 16 7 16 10 7 12 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 14288 chr15 102531392 + 31057619 31057896 L1PB1 5432 - 19 291 143594 9 1 0 13 1 0 21 1 0 24 2 0 15 7 4 18 1 13 16 1 0 44 18 16 50 3 1 11 5 2 10 1 0 5 chain 526460 chr15 102531392 + 31067383 31073593 L1PA4 6152 + 10 6136 4554 111 7 21 473 0 4 117 1 0 223 106 0 1056 0 1 197 0 3 453 1 0 28 0 3 426 3 0 1199 1 0 434 7 10 535 0 4 7 0 1 227 9 4 589 chain 92062 chr15 102531392 + 31099037 31100107 MER11C 1089 - 16 1089 38950 83 0 2 389 12 13 586 chain 4676 chr15 102531392 + 31106510 31106820 L1ME3A 1206 + 654 937 198802 22 238 211 50 chain 10397 chr15 102531392 + 31140101 31140275 L1MA3 4352 + 4171 4352 158707 32 1 4 24 3 0 27 2 0 24 1 0 6 1 0 27 4 15 22 chain 539178 chr15 102531392 + 31140835 31146956 L1PA4 6152 - 9 6151 2956 58 2 0 83 0 1 296 0 17 382 1 5 666 1 0 373 0 1 1305 0 1 2954 chain 2958 chr15 102531392 + 31149169 31149203 MLT1A0-int 1658 - 997 1031 225917 34 chain 131108 chr15 102531392 + 31175776 31177316 LTR12C 1709 + 0 1709 27833 309 0 1 4 1 0 440 0 163 193 10 7 13 0 4 85 0 1 4 0 4 481 chain 6574 chr15 102531392 + 31184369 31184490 MER2 342 - 1 123 180662 15 34 35 72 chain 24203 chr15 102531392 + 31211310 31211603 AluSp 311 + 9 304 109193 133 3 0 8 0 3 107 0 2 42 chain 13176 chr15 102531392 + 31279903 31280130 L1PA8 5853 - 6 206 147565 87 2 0 9 29 14 35 9 2 5 2 0 16 1 0 32 chain 25441 chr15 102531392 + 31290017 31290308 AluYd8 298 + 0 286 102492 89 5 0 197 chain 8539 chr15 102531392 + 31344554 31344661 L1MB3 1562 + 350 456 168066 80 1 0 26 chain 3191 chr15 102531392 + 31405955 31405992 LTR12_ 688 - 197 234 221094 37 chain 4990 chr15 102531392 + 31442567 31442627 MER61E 571 + 4 64 195251 60 chain 40109 chr15 102531392 + 31444663 31445536 MER4D1 891 + 8 589 69166 18 1 0 86 8 6 75 314 23 50 0 2 148 1 0 13 1 0 112 0 1 4 1 2 41 chain 10852 chr15 102531392 + 31447938 31448092 MER4E1 777 + 0 153 156773 17 2 0 34 1 2 100 chain 34309 chr15 102531392 + 31450438 31451251 MER41C 542 - 11 528 77191 109 325 6 69 20 41 255 4 5 13 0 1 18 chain 127651 chr15 102531392 + 31476142 31477630 SVA_B 1603 + 0 1603 28658 21 35 28 204 0 1 575 4 45 34 0 82 606 2 0 7 chain 18772 chr15 102531392 + 31480026 31480452 L1PA17 2846 - 153 566 130767 36 45 43 14 1 0 8 3 0 7 104 97 208 chain 24762 chr15 102531392 + 31486668 31487069 MSTA 426 - 21 426 106100 109 0 1 28 36 31 26 6 5 35 10 14 42 0 4 6 3 4 100 chain 29314 chr15 102531392 + 31491076 31491497 LTR7B 505 + 0 495 87474 102 2 13 41 1 2 17 0 38 12 3 27 26 0 2 85 1 0 76 14 13 41 chain 15376 chr15 102531392 + 31512281 31512520 MER1B 344 + 103 344 140274 96 19 18 50 15 18 59 chain 42095 chr15 102531392 + 31516751 31517296 MER41A 554 + 0 554 66503 42 4 5 150 19 27 330 chain 16467 chr15 102531392 + 31542740 31542942 L1PA5 6144 + 5938 6139 137015 52 7 6 143 chain 25479 chr15 102531392 + 31566356 31566670 AluY 311 + 0 311 102319 22 0 2 99 11 4 149 0 2 33 chain 8904 chr15 102531392 + 31578896 31579133 L1MA3 4352 - 0 233 166116 18 22 17 29 1 0 5 15 17 6 2 0 11 34 30 14 3 9 77 chain 4680 chr15 102531392 + 31606917 31607046 MLT1E3 631 - 487 624 198763 45 62 70 22 chain 23193 chr15 102531392 + 31643934 31644226 AluSg7 307 + 2 292 114708 83 3 0 46 0 1 160 chain 24041 chr15 102531392 + 31688237 31688525 AluSp 311 - 21 311 110110 176 0 2 112 chain 25906 chr15 102531392 + 31739958 31740272 L1PA5 6144 - 0 314 100401 226 0 1 32 1 0 55 chain 23963 chr15 102531392 + 31758531 31758823 AluSg7 307 - 14 307 110551 91 0 1 69 0 1 26 1 0 105 chain 3898 chr15 102531392 + 31762902 31762978 MER20 218 + 30 109 208881 5 0 1 30 19 21 22 chain 25555 chr15 102531392 + 31824848 31825157 AluY 311 + 0 303 101949 99 7 0 33 0 1 170 chain 26242 chr15 102531392 + 31827326 31827690 THE1D 372 + 0 371 99044 6 1 0 160 0 4 8 12 16 146 1 0 19 0 1 11 chain 46091 chr15 102531392 + 31868218 31868851 MER4A 717 + 0 634 61953 49 1 21 58 2 1 59 16 1 54 1 2 19 4 0 370 chain 115950 chr15 102531392 + 31873064 31874633 THE1B-int 1605 - 0 1604 32477 125 0 4 97 0 21 97 5 7 50 2 3 444 6 30 64 7 4 39 0 1 165 50 33 137 0 2 281 chain 4484 chr15 102531392 + 31887528 31887599 L1MA4 2864 - 262 334 200975 28 7 8 36 chain 529782 chr15 102531392 + 31890443 31896812 L1PA7 6471 + 35 6466 4215 61 4 5 142 0 1 8 6 4 146 1 0 10 1 0 333 4 6 26 6 5 470 15 34 709 15 0 127 6 53 444 0 1 20 0 1 625 0 2 216 15 13 47 0 4 111 0 3 754 0 1 251 0 12 466 2 1 1268 1 0 3 8 0 48 chain 305441 chr15 102531392 + 31902006 31906470 L1PB1 5432 + 33 5401 13192 177 17 34 56 0 3 38 0 1 21 27 1286 65 12 9 27 1 4 163 1 0 172 348 0 408 7 0 200 0 2 50 0 2 91 1 0 40 0 7 49 1 0 4 1 2 75 21 20 215 0 1 8 0 1 33 0 1 70 0 1 242 0 2 120 0 3 860 7 5 27 3 0 226 0 2 68 0 6 173 1 0 13 11 0 24 1 0 7 1 0 10 6 2 8 2 0 53 2 1 16 1 0 44 1 0 7 31 21 18 3 1 4 1 0 7 2 1 6 2 0 26 1 0 19 1 0 10 chain 540412 chr15 102531392 + 31909987 31916106 L1PA5 6144 - 4 6141 2752 839 0 4 215 0 1 540 1 2 74 0 3 117 0 4 269 0 1 817 0 1 872 0 4 64 2 0 305 0 1 101 0 1 1176 2 1 725 chain 542460 chr15 102531392 + 31919293 31925475 L1PA4 6152 - 0 6152 2438 18 1 0 840 1 0 885 0 1 892 1 2 256 0 1 558 0 5 626 1 0 1234 34 0 258 1 0 576 chain 4890 chr15 102531392 + 31932331 31932395 L1PB1 5432 + 5158 5220 196370 11 3 1 50 chain 10800 chr15 102531392 + 31932413 31932594 L1PB1 5432 + 5236 5420 156989 44 1 0 16 1 13 18 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 394007 chr15 102531392 + 31955895 31961260 L1PB1 5432 - 8 5367 10319 4 1 0 16 1 0 13 1 0 18 1 0 27 2 0 12 12 9 14 16 7 8 3 0 16 1 0 43 1 0 16 2 1 50 3 1 11 16 11 9 1 0 24 16 14 27 0 1 212 4 13 32 11 4 5 0 2 82 0 1 14 0 2 82 0 2 12 8 12 611 1 0 508 0 4 91 0 1 13 0 1 262 0 3 5 11 7 180 0 38 209 26 1 22 0 7 14 1 2 62 0 1 31 0 1 171 5 7 54 0 1 192 0 1 175 0 3 55 0 1 141 9 8 311 16 1 7 1 0 41 8 9 90 7 12 7 0 2 348 1 0 16 1 0 469 1 0 329 9 0 7 chain 16543 chr15 102531392 + 31971604 31971948 THE1D 372 + 2 328 136811 13 1 3 14 1 0 42 4 5 65 100 80 104 chain 61319 chr15 102531392 + 32009451 32010157 L1PA7 6471 - 7 713 52191 692 0 2 5 2 0 7 chain 25851 chr15 102531392 + 32012604 32012894 AluYf4 310 - 12 302 100653 290 chain 29492 chr15 102531392 + 32026301 32026743 L1PA13 3608 + 3065 3497 86663 56 8 7 32 1 0 113 8 6 57 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 15 0 3 11 chain 27949 chr15 102531392 + 32041179 32041491 L1PA4 6152 + 5829 6143 93167 147 0 2 165 chain 100499 chr15 102531392 + 32045530 32047007 L1PB1 5432 - 15 1403 36628 4 1 0 9 1 0 13 1 0 18 4 3 24 3 1 13 1 0 4 6 4 27 12 1 15 1 0 45 18 16 53 2 0 8 2 0 3 2 0 10 1 0 12 1 0 20 81 11 101 1 0 20 0 4 174 1 0 173 0 2 16 0 4 374 0 1 27 1 3 147 0 1 27 chain 6229 chr15 102531392 + 32082022 32082095 AluSp 311 + 65 138 183322 73 chain 32240 chr15 102531392 + 32094345 32094751 MLT2A1 477 - 80 477 80459 12 6 0 108 1 0 97 0 1 10 5 2 167 chain 8547 chr15 102531392 + 32113049 32113281 L1MB8 1703 - 41 210 168033 37 108 43 39 0 2 48 chain 17272 chr15 102531392 + 32141138 32141337 L1P2 5180 - 3239 3449 134631 16 0 1 65 0 10 118 chain 119918 chr15 102531392 + 32141337 32142757 L1PA5 6144 + 4714 6128 31085 577 6 9 219 10 0 146 0 1 462 chain 128297 chr15 102531392 + 32154959 32156531 THE1A-int 1579 - 5 1579 28497 214 0 1 288 0 1 69 0 1 362 15 14 624 chain 41356 chr15 102531392 + 32191276 32191748 L1PA7 6471 + 5987 6459 67465 472 chain 147847 chr15 102531392 + 32203830 32205452 L1PA3long 6157 - 0 1623 24897 5 0 1 1617 chain 4205 chr15 102531392 + 32215841 32215904 LTR12_ 688 + 459 520 204477 31 6 4 26 chain 3313 chr15 102531392 + 32226904 32226945 HERVL-int 5654 + 515 556 218731 41 chain 4387 chr15 102531392 + 32233274 32233343 L1P1 4361 - 20 87 202106 12 2 1 23 1 0 31 chain 14737 chr15 102531392 + 32233354 32233512 L1PA4 6152 + 5985 6143 142149 158 chain 42607 chr15 102531392 + 32241732 32242280 L1PA16 3655 - 652 1205 65889 21 0 2 59 1 0 18 1 0 103 6 7 60 0 4 279 chain 5431 chr15 102531392 + 32261130 32261188 L1PA4 6152 + 6093 6151 190694 58 chain 13767 chr15 102531392 + 32282733 32283004 Tigger1 2417 - 24 334 145376 19 21 0 9 19 69 33 9 13 98 11 17 52 chain 28571 chr15 102531392 + 32291230 32291528 AluYa5 310 - 12 310 90865 298 chain 24219 chr15 102531392 + 32291792 32292134 L1PA8 5853 + 5517 5853 109103 47 1 0 43 3 1 71 2 0 9 1 0 6 0 1 45 2 1 4 0 1 14 1 0 8 0 1 78 1 0 6 chain 41041 chr15 102531392 + 32308636 32309185 MLT2A2 560 + 0 560 67841 122 11 7 64 2 5 201 3 14 34 0 1 112 chain 536513 chr15 102531392 + 32337890 32343989 L1PA4 6152 - 18 6136 3372 1373 0 1 23 2 0 658 0 1 458 0 1 222 0 1 606 0 24 907 0 1 1151 7 0 127 1 0 564 chain 104645 chr15 102531392 + 32370728 32372068 L1PA10 4194 + 2818 4150 35579 125 0 1 12 10 0 827 10 17 218 3 6 52 5 0 37 9 6 24 1 0 7 chain 40747 chr15 102531392 + 32401204 32401733 MER41A 554 - 8 554 68245 65 1 17 107 6 9 255 0 1 27 3 0 65 chain 522911 chr15 102531392 + 32432127 32438250 L1PA6 6164 - 2 6164 4878 60 1 0 292 0 1 212 3 4 130 4 0 147 0 4 1026 1 0 7 0 3 165 0 1 533 0 2 384 0 1 223 2 0 384 0 4 721 0 5 125 1 0 683 0 4 217 0 17 240 1 0 154 4 3 126 1 2 202 0 6 74 chain 5058 chr15 102531392 + 32439381 32439454 L1PA16 3655 + 3522 3592 194561 56 3 0 14 chain 554050 chr15 102531392 + 32475630 32481761 L1PA3long 6157 + 4 6146 942 522 4 0 312 0 1 138 0 1 211 0 3 613 1 3 1462 0 3 2031 0 4 42 1 2 657 1 0 108 0 1 28 chain 20947 chr15 102531392 + 32488520 32488845 THE1D 372 - 15 372 124122 15 5 4 90 0 1 53 28 39 43 6 17 20 0 10 65 chain 19913 chr15 102531392 + 32490606 32490905 AluY 311 + 0 288 127424 52 8 16 55 22 3 13 5 5 144 chain 105655 chr15 102531392 + 32494220 32495417 L1PA4 6152 + 4949 6143 35338 358 4 0 188 0 1 647 chain 19763 chr15 102531392 + 32510116 32510451 Tigger3d 321 + 20 290 127927 164 0 1 16 15 0 9 29 0 6 22 0 74 chain 28728 chr15 102531392 + 32536730 32537036 AluYf4 310 - 4 310 90219 306 chain 5909 chr15 102531392 + 32541157 32541229 MLT1C 463 + 117 189 186098 6 0 1 27 1 0 38 chain 11120 chr15 102531392 + 32546556 32546683 L1PA2 6032 - 2 129 155731 127 chain 135891 chr15 102531392 + 32563234 32565753 L1PBa 3878 - 1950 3797 26860 197 616 0 117 3 0 668 1 0 4 0 1 223 0 1 21 0 1 173 1 0 87 21 35 25 1 2 57 0 1 78 2 0 17 11 0 7 1 0 42 78 26 45 1 0 10 2 0 5 1 0 4 chain 9964 chr15 102531392 + 32576352 32576459 U6 107 + 0 107 160755 107 chain 40057 chr15 102531392 + 32576459 32576897 L1PA3long 6157 + 5715 6153 69238 438 chain 545004 chr15 102531392 + 32584476 32590503 L1PA3long 6157 + 4 6152 2074 148 0 1 210 6 3 160 4 0 250 0 128 2564 0 1 523 3 1 2159 chain 56116 chr15 102531392 + 32592736 32593613 L1PB 1623 + 730 1575 55060 5 1 0 93 3 6 50 4 9 403 0 1 12 8 1 44 0 1 4 1 0 87 1 0 7 3 2 29 1 0 4 3 0 8 10 7 12 1 0 9 52 29 22 chain 23774 chr15 102531392 + 32599239 32599573 L1PA8 5853 + 5526 5853 111632 38 1 0 44 2 0 70 16 14 44 8 7 17 2 1 92 chain 24657 chr15 102531392 + 32621470 32621763 AluSg7 307 - 5 297 106690 225 1 0 67 chain 45485 chr15 102531392 + 32643867 32644386 L1PA4 6152 + 5636 6152 62513 372 0 1 137 4 0 6 chain 62995 chr15 102531392 + 32671179 32671879 L1PA4 6152 - 1448 2148 51335 700 chain 128165 chr15 102531392 + 32671879 32673320 L1PA4 6152 + 4700 6141 28533 693 0 1 364 1 0 383 chain 26740 chr15 102531392 + 32707704 32707985 AluYa5 310 + 21 302 97191 281 chain 37423 chr15 102531392 + 32710650 32711143 LOR1a 498 + 0 491 72934 37 11 12 106 1 0 55 1 0 273 1 0 8 chain 10796 chr15 102531392 + 32718860 32719085 MER30 238 + 0 238 157009 16 42 42 36 6 5 8 4 0 8 5 17 20 0 6 80 chain 64641 chr15 102531392 + 32731148 32731861 L1PA3long 6157 - 0 711 50731 15 3 0 24 0 1 671 chain 14331 chr15 102531392 + 32770061 32770269 MER30 238 + 0 238 143457 15 0 18 74 4 20 45 1 0 26 3 0 40 chain 36009 chr15 102531392 + 32797916 32798393 LTR2B 499 + 13 499 74882 58 9 0 33 0 19 267 4 3 106 chain 44957 chr15 102531392 + 32798802 32799412 PRIMA4_LTR 623 - 0 623 63112 205 0 4 24 1 2 44 1 2 14 1 0 12 0 2 67 0 1 8 13 21 29 4 0 100 0 1 87 chain 9548 chr15 102531392 + 32799548 32799668 MER30 238 - 3 119 162842 109 4 0 7 chain 3202 chr15 102531392 + 32820125 32820197 L1PB4 2604 + 2497 2572 220906 33 23 26 16 chain 36797 chr15 102531392 + 32843757 32844242 MER1A 529 + 46 529 73803 410 20 18 55 chain 59399 chr15 102531392 + 32849533 32850309 MER4E1 777 - 0 777 53178 8 0 2 230 2 0 187 0 1 17 5 6 133 1 0 19 4 3 146 0 1 24 chain 25317 chr15 102531392 + 32883981 32884275 AluY 311 + 12 303 103136 107 4 0 13 0 1 170 chain 3980 chr15 102531392 + 32899740 32899783 MER5A1 166 - 50 93 207688 43 chain 4336 chr15 102531392 + 32900694 32900755 Tigger3b 1229 + 476 536 202771 4 1 0 56 chain 23884 chr15 102531392 + 32910866 32911159 AluY 311 + 12 290 111000 97 16 0 89 0 1 91 chain 24623 chr15 102531392 + 32934492 32934796 AluSq 315 + 10 312 106867 42 5 1 80 0 2 177 chain 4471 chr15 102531392 + 32953468 32953538 MER20 218 - 91 164 201110 32 7 10 31 chain 26827 chr15 102531392 + 32980877 32981179 AluYk4 311 + 0 301 96886 132 1 0 169 chain 15649 chr15 102531392 + 32995901 32996118 MER1B 344 + 105 329 139438 157 18 25 42 chain 129050 chr15 102531392 + 33016841 33018354 L1PA7 6471 - 1 1523 28304 338 0 1 119 6 8 383 2 1 585 0 7 80 chain 93288 chr15 102531392 + 33018354 33019532 L1P3 4156 + 2956 4139 38569 80 0 1 43 12 17 422 10 1 17 4 8 46 7 0 478 0 14 17 18 15 24 chain 11368 chr15 102531392 + 33046172 33046339 MSTB1 431 + 31 204 154824 4 1 0 25 2 4 72 4 9 59 chain 44724 chr15 102531392 + 33049164 33049946 L1MA1 4479 - 343 1106 63355 30 2 0 21 8 7 66 13 14 41 8 5 5 1 0 46 93 89 57 5 4 12 2 0 25 1 0 30 6 7 77 0 1 81 2 0 127 5 0 18 chain 20112 chr15 102531392 + 33054781 33055010 THE1A-int 1579 - 0 229 126789 229 chain 90186 chr15 102531392 + 33096719 33097772 L1PA6 6164 - 2 1068 39583 8 2 0 7 0 2 107 0 3 481 0 3 229 0 4 25 0 3 194 chain 55081 chr15 102531392 + 33138434 33139104 L1PA8A 6298 + 5332 6024 55659 140 0 4 8 0 7 48 0 5 24 0 2 91 0 3 165 0 1 194 chain 16144 chr15 102531392 + 33158250 33158439 L1PA5 6144 + 5955 6144 137917 189 chain 189133 chr15 102531392 + 33181992 33185043 L1PB1 5432 - 8 2738 20134 4 1 0 16 1 0 13 1 0 21 1 0 12 59 45 12 2 0 6 1 0 14 1 0 44 1 0 16 2 1 53 27 20 9 1 0 21 6 1 11 1 4 49 1 0 5 0 1 230 1 4 107 0 2 81 8 13 65 42 63 160 0 2 234 4 0 55 6 8 12 334 48 84 22 0 119 0 4 11 30 20 116 0 1 426 1 0 26 1 0 313 3 0 148 chain 33027 chr15 102531392 + 33199267 33199755 MER1A 529 - 8 526 79174 17 0 1 32 25 16 128 13 7 54 0 4 127 13 53 79 chain 21847 chr15 102531392 + 33216849 33217119 AluSp 311 + 11 286 120827 114 0 5 156 chain 110365 chr15 102531392 + 33254472 33255703 L1PA3long 6157 + 4925 6156 34103 1083 3 1 140 0 2 5 chain 203380 chr15 102531392 + 33295103 33297397 L1PA4 6152 + 3826 6148 18970 184 0 14 151 0 1 175 0 4 173 0 3 592 0 1 180 0 4 169 0 2 419 1 0 250 chain 5867 chr15 102531392 + 33311444 33311602 LTR12C 1709 - 623 940 186519 18 41 0 10 0 41 31 1 79 16 10 91 31 chain 17662 chr15 102531392 + 33323026 33323254 L1PA7 6471 - 5 225 133800 9 3 0 137 6 1 73 chain 3779 chr15 102531392 + 33336006 33336965 MER52A 1651 + 161 840 210683 28 0 23 14 789 554 31 79 11 18 chain 23530 chr15 102531392 + 33340777 33341131 THE1B 368 - 3 361 112964 54 1 0 4 20 7 124 8 7 27 7 11 72 0 15 37 chain 8948 chr15 102531392 + 33341184 33341326 MER41-int 2638 + 438 580 165883 12 17 15 87 0 2 26 chain 28013 chr15 102531392 + 33369570 33369919 L1PA5 6144 - 3 351 92955 256 2 1 91 chain 26793 chr15 102531392 + 33379802 33380398 L1PB1 5432 + 4918 5422 97003 107 1 3 53 2 0 13 86 20 11 0 3 7 1 0 11 32 25 49 2 1 15 1 0 44 1 0 16 15 0 7 4 8 7 0 1 7 3 1 5 1 0 14 4 2 22 2 1 21 1 0 12 1 0 18 chain 103640 chr15 102531392 + 33512395 33513576 L1PA5 6144 + 4965 6143 35815 894 0 3 273 6 0 8 chain 20280 chr15 102531392 + 33549034 33549341 MER1B 344 - 5 300 126277 56 7 11 167 27 13 8 2 0 40 chain 257135 chr15 102531392 + 33560908 33565633 L1MA1 4479 - 337 4251 15871 35 2 0 26 11 10 119 3 0 5 1 0 82 0 1 4 6 0 13 3 1 9 17 15 67 1 0 16 2 1 18 13 12 19 344 51 52 0 1 72 3 1 123 2 0 6 32 30 7 0 10 13 15 0 60 5 0 12 1 0 73 4 0 21 9 7 164 9 7 14 10 9 43 153 41 68 1 0 33 2 0 31 0 1 15 8 0 18 11 10 28 2 1 10 1 0 53 7 0 21 1 5 49 1 0 4 0 1 122 23 5 12 7 27 23 1 0 110 0 1 125 0 1 9 1 0 58 0 3 34 0 1 33 0 2 52 0 6 88 0 4 37 8 5 41 3 14 26 0 1 21 0 1 188 0 1 4 1 0 43 421 48 68 0 3 151 0 2 355 4 0 27 7 10 12 1 0 336 0 1 53 3 0 82 2 0 50 chain 4275 chr15 102531392 + 33562475 33562520 L1MA1 4479 + 2906 2951 203535 45 chain 67079 chr15 102531392 + 33572411 33573167 L1PA5 6144 - 12 771 49625 650 0 3 106 chain 37920 chr15 102531392 + 33630100 33630945 PRIMA4_LTR 623 - 12 623 72251 23 322 0 17 0 9 10 4 6 97 0 45 12 0 3 20 0 4 102 1 3 62 0 23 151 1 0 5 0 1 18 chain 4780 chr15 102531392 + 33639083 33639134 AluJr4 308 + 62 113 197577 51 chain 169864 chr15 102531392 + 33642381 33644303 L1P1 4361 + 2401 4325 22068 777 0 1 425 0 1 545 1 0 27 1 3 124 2 1 20 chain 5581 chr15 102531392 + 33649835 33649898 MER41B 635 + 483 547 189273 28 0 1 35 chain 26930 chr15 102531392 + 33681122 33681430 L1PA4 6152 + 5820 6143 96512 94 1 16 213 chain 6464 chr15 102531392 + 33701403 33701479 L1PA3long 6157 - 16 92 181524 76 chain 9661 chr15 102531392 + 33737009 33737116 L1PA5 6144 + 6036 6143 162295 107 chain 37422 chr15 102531392 + 33815225 33815751 LTR12_ 688 + 0 688 72937 60 2 43 35 24 8 296 10 13 13 0 133 18 0 1 68 chain 44301 chr15 102531392 + 33850300 33850803 L1PA5 6144 - 1 503 63821 278 1 0 224 chain 6108 chr15 102531392 + 33850804 33850874 L1PA5 6144 + 5556 5626 184357 70 chain 191962 chr15 102531392 + 33867002 33869531 L1PA10 4194 + 1604 4146 19870 122 3 4 282 0 4 39 7 6 165 1 7 36 0 6 349 15 16 14 6 3 19 3 7 22 0 4 253 0 1 17 1 0 21 9 0 123 1 2 55 0 1 210 2 1 7 0 3 108 1 0 397 35 34 14 0 1 159 3 0 30 chain 178419 chr15 102531392 + 33885469 33888073 MER4-int 2692 - 6 2613 21127 5 0 3 31 0 1 72 0 10 52 1 0 15 1 0 35 4 3 95 4 0 79 9 0 9 1 12 52 1 0 33 2 0 5 0 1 26 0 8 184 7 8 58 1 0 72 0 5 54 0 1 4 0 1 239 6 1 29 5 10 147 2 0 14 12 11 28 1 0 53 23 12 11 6 9 34 2 1 51 7 6 111 0 1 110 4 8 100 0 4 11 0 5 26 3 6 44 2 1 32 7 8 29 0 1 200 3 0 9 14 6 243 8 0 23 2 0 4 0 1 14 3 0 20 chain 5163 chr15 102531392 + 33888989 33889050 L1MA5A 2387 - 92 153 193421 61 chain 8528 chr15 102531392 + 33889084 33889228 LTR8 732 + 81 227 168143 59 12 12 13 6 8 54 chain 19068 chr15 102531392 + 33917193 33917552 THE1D 372 - 0 372 129912 151 1 2 25 29 37 22 69 73 62 chain 18950 chr15 102531392 + 33930004 33930217 L1PA4 6152 - 0 213 130226 213 chain 2854 chr15 102531392 + 33933517 33933552 MIRb 242 + 107 142 227796 35 chain 16157 chr15 102531392 + 33960317 33960544 AluY 311 + 100 296 137875 26 18 0 163 13 0 7 chain 470546 chr15 102531392 + 33975715 33981575 L1PA6 6164 + 0 6162 8018 567 1 0 177 1 0 43 0 17 230 0 546 278 1 6 20 0 1 442 1 2 253 0 4 585 1 0 28 0 4 28 0 13 20 0 4 48 3 0 136 0 1 348 0 5 125 0 1 116 0 4 318 0 4 365 0 1 575 0 3 16 2 1 36 313 0 509 0 3 132 2 3 131 0 4 9 chain 10456 chr15 102531392 + 33995503 33995637 MLT1B 390 - 2 136 158464 134 chain 36221 chr15 102531392 + 34000866 34001339 LTR10F 562 - 3 562 74598 282 17 16 30 0 3 38 0 84 106 chain 6039 chr15 102531392 + 34021480 34021553 MER20 218 - 58 131 184897 73 chain 189963 chr15 102531392 + 34042946 34045270 L1PA7 6471 - 22 2302 20050 132 4 5 85 6 5 12 12 0 607 0 4 258 0 1 983 43 5 93 1 2 88 chain 522937 chr15 102531392 + 34050052 34056789 L1PA7 6471 + 6 6470 4872 183 0 1 223 0 1 284 21 19 81 10 12 538 0 2 15 2 1 388 0 2 147 0 1 4 1 0 83 2 6 140 0 1 26 0 4 256 0 3 92 0 4 14 0 26 77 0 1 248 0 4 129 0 1 274 1 0 103 3 0 149 0 4 145 1 0 31 3 0 271 9 5 306 0 3 356 1 0 43 10 1 235 1 0 662 0 3 25 8 7 63 0 1 89 312 0 25 2 0 177 11 13 444 1 0 12 chain 24629 chr15 102531392 + 34121678 34121970 AluY 311 + 11 300 106831 115 4 0 105 0 1 68 chain 45103 chr15 102531392 + 34171269 34171765 L1PA3long 6157 + 5663 6157 62930 489 2 0 5 chain 181474 chr15 102531392 + 34183441 34185552 L1PA6 6164 - 5 2131 20848 186 4 0 69 0 6 66 0 1 515 0 4 537 1 8 124 5 2 275 0 4 329 chain 3795 chr15 102531392 + 34193128 34193171 LTR62 707 + 2 45 210456 43 chain 20567 chr15 102531392 + 34208964 34209339 THE1C 375 - 2 375 125408 28 8 9 16 9 6 98 28 31 46 5 9 47 22 15 68 chain 15376 chr15 102531392 + 34209837 34210149 L1PB1 5432 + 5114 5422 140273 24 1 0 6 1 0 14 5 1 9 2 0 52 2 1 16 1 0 31 29 41 6 0 2 9 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 24545 chr15 102531392 + 34236741 34237022 AluY 311 + 13 295 107282 113 0 1 168 chain 2644 chr15 102531392 + 34243593 34243624 L1PA6 6164 + 5984 6015 231100 31 chain 12588 chr15 102531392 + 34243629 34243770 L1PA6 6164 + 6021 6162 149889 141 chain 161342 chr15 102531392 + 34245141 34247006 L1PA6 6164 + 4303 6157 23142 62 0 3 129 0 1 143 4 2 654 12 0 730 1 0 130 chain 103497 chr15 102531392 + 34287945 34289248 L1P2 5180 + 32 1331 35865 31 2 3 84 1 0 44 1 0 53 1 0 62 13 15 129 9 8 54 1 0 272 1 0 6 1 0 538 chain 69163 chr15 102531392 + 34310463 34311382 LTR12 884 - 0 879 48732 76 0 2 61 0 2 366 2 0 12 0 1 18 41 0 94 3 2 75 0 3 29 3 0 119 1 0 19 chain 3230 chr15 102531392 + 34310998 34311039 LTR12 884 - 629 670 146450 41 chain 341273 chr15 102531392 + 34341235 34346449 L1PA11 4918 + 8 4567 11860 34 2 0 37 3 0 31 7 6 12 3 2 51 1 0 31 2 0 6 2 1 181 0 1 67 1 0 18 2 22 16 0 3 325 0 1 11 310 0 152 10 1 19 0 1 364 1 2 325 10 11 73 1 2 155 0 4 7 0 1 214 2 1 17 0 1 31 4 6 182 0 1 114 10 0 44 0 3 125 1 0 191 2 1 38 0 1 15 0 1 351 0 2 346 8 7 18 333 1 66 0 1 4 1 0 390 0 1 167 5 4 34 4 0 36 1 0 11 1 0 68 2 0 14 1 0 10 31 22 10 13 9 15 1 0 13 chain 20358 chr15 102531392 + 34394524 34394853 MER75 514 + 41 341 126041 29 33 0 18 26 29 103 0 1 120 chain 13939 chr15 102531392 + 34396498 34397282 MER75B 242 + 50 242 144794 11 0 2 44 592 0 109 1 0 11 1 0 15 chain 3263 chr15 102531392 + 34408754 34408817 ORSL 269 - 27 91 219724 18 11 10 17 0 2 17 chain 83061 chr15 102531392 + 34412740 34414736 L1MA2 4263 - 158 1372 42307 23 0 5 7 0 1 11 7 0 92 1 0 8 1 0 150 3 0 5 9 10 42 0 4 85 1 0 71 4 7 18 3 1 78 12 16 65 5 0 63 335 13 84 461 0 77 0 2 5 0 1 215 0 1 4 1 0 50 chain 513972 chr15 102531392 + 34458163 34464285 L1PA6 6164 + 0 6158 5780 13 5 1 445 8 6 53 3 4 265 0 17 719 0 1 33 4 5 213 0 8 482 2 0 10 0 2 84 0 1 555 0 1 265 8 8 421 0 1 178 1 2 575 0 2 517 0 3 1126 0 1 18 0 3 115 0 1 4 chain 3049 chr15 102531392 + 34479315 34479409 MER52C 1267 + 866 914 224016 31 46 0 17 chain 27868 chr15 102531392 + 34485137 34485439 AluYh9 303 + 1 303 93464 302 chain 20099 chr15 102531392 + 34495981 34496234 L1PA7 6471 + 6210 6470 126832 207 2 3 31 1 7 12 chain 21202 chr15 102531392 + 34515706 34515959 AluSp 311 + 29 282 123206 253 chain 4069 chr15 102531392 + 34519047 34519096 MADE1 96 + 45 94 206329 49 chain 13350 chr15 102531392 + 34532154 34532309 L1PA5 6144 - 1 157 146881 10 2 3 143 chain 3494 chr15 102531392 + 34559699 34559738 MER20 218 - 90 129 215442 39 chain 3648 chr15 102531392 + 34568840 34568886 Charlie4a 502 + 53 98 212834 14 1 0 31 chain 31671 chr15 102531392 + 34572770 34573307 L1MA5A 2387 + 1792 2269 81373 53 1 0 69 9 0 27 2 3 89 1 0 27 1 0 48 1 0 47 2 0 20 11 6 34 3 0 13 42 4 37 chain 466435 chr15 102531392 + 34579197 34585346 L1PA7 6471 - 2 6466 8177 11 1 2 135 0 7 7 6 9 116 0 1 169 3 7 384 2 1 192 0 1 144 0 3 51 27 15 15 0 4 247 2 1 790 0 1 135 10 13 15 7 9 436 0 4 58 1 2 36 3 0 360 3 2 188 5 9 174 1 10 41 3 1 25 24 12 170 1 0 33 0 1 1056 2 1 19 1 0 4 0 1 268 8 29 90 3 0 5 0 3 43 4 7 5 3 0 22 1 76 57 5 15 55 19 17 16 9 9 57 51 247 4 0 1 104 15 14 192 chain 23666 chr15 102531392 + 34639791 34640082 AluY 311 + 19 311 112221 112 1 2 178 chain 28771 chr15 102531392 + 34668261 34668675 LTR7B 505 + 0 488 90013 108 0 10 66 6 13 18 0 26 8 3 1 17 0 33 22 0 1 42 1 0 23 0 1 52 14 13 34 chain 26465 chr15 102531392 + 34740282 34740579 AluYf4 310 - 13 310 98186 48 0 1 122 1 0 126 chain 24403 chr15 102531392 + 34741754 34742024 AluY 311 + 40 309 108058 93 1 0 176 chain 29724 chr15 102531392 + 34746988 34747306 AluYb8 318 + 0 318 85746 318 chain 60674 chr15 102531392 + 34751141 34751885 L1PA8A 6298 - 11 770 52483 94 1 20 249 3 0 191 1 0 205 chain 28435 chr15 102531392 + 34755712 34756142 MLT2A1 477 + 13 477 91449 33 17 16 11 0 1 39 2 1 28 0 1 26 0 4 15 11 12 185 3 33 40 1 0 19 chain 15355 chr15 102531392 + 34772038 34772218 L1PA5 6144 - 4 182 140327 151 2 0 27 chain 258010 chr15 102531392 + 34776962 34780427 L1PA5 6144 + 3237 6139 15809 1961 20 0 43 0 1 488 0 1 30 545 0 378 chain 22555 chr15 102531392 + 34779628 34779881 L1PA5 6144 + 5886 6139 117786 253 chain 6027 chr15 102531392 + 34858338 34858476 L1MB3 1562 + 1385 1505 185005 9 0 2 23 41 21 12 1 2 12 1 0 39 chain 103740 chr15 102531392 + 34877790 34879001 L1PA5 6144 + 4890 6097 35786 362 1 0 14 5 10 18 2 0 503 7 0 204 0 1 95 chain 3808 chr15 102531392 + 34879059 34879102 L1PA5 6144 + 6098 6141 210255 43 chain 14429 chr15 102531392 + 34882146 34882318 L1PA6 6164 + 5989 6160 143117 163 1 0 8 chain 17424 chr15 102531392 + 34884605 34884819 AluSp 311 - 10 218 134450 11 5 0 116 1 0 81 chain 8632 chr15 102531392 + 34896519 34896721 L1PA11 4918 - 340 524 167577 11 2 0 13 1 0 15 13 9 8 2 0 3 3 0 11 13 9 11 1 0 14 2 0 54 0 3 10 2 0 13 chain 25906 chr15 102531392 + 34923104 34923452 MLT2A1 477 - 120 477 100409 60 4 0 5 0 8 111 1 5 26 1 2 140 chain 21340 chr15 102531392 + 34923685 34923934 L1P3 4156 - 964 1214 121778 95 0 1 154 chain 201702 chr15 102531392 + 34923934 34926363 L1PA7 6471 + 4021 6470 19089 290 0 3 87 0 9 4 0 1 399 7 9 163 5 7 625 0 6 423 0 1 86 1 2 171 22 17 146 chain 28643 chr15 102531392 + 34930755 34931075 AluYa5 310 - 0 310 90547 178 10 0 132 chain 50999 chr15 102531392 + 34945402 34945977 L1PA5 6144 - 12 588 58309 320 1 2 254 chain 11771 chr15 102531392 + 34955020 34955171 L1PA5 6144 - 4 156 153171 57 5 6 89 chain 29550 chr15 102531392 + 35009042 35009352 AluYa5 310 - 0 310 86421 310 chain 28951 chr15 102531392 + 35059586 35059892 AluYb9 318 - 12 318 89216 306 chain 29884 chr15 102531392 + 35079340 35079719 THE1C 375 - 0 375 85149 26 1 0 218 5 1 58 0 1 71 chain 74821 chr15 102531392 + 35099278 35100289 MER11A 1151 - 7 1151 46104 30 0 2 124 4 5 16 1 0 30 1 2 14 0 1 58 10 37 9 0 8 103 20 21 145 0 1 92 5 6 146 4 0 63 0 4 49 8 0 24 0 99 55 chain 13447 chr15 102531392 + 35119547 35119714 L1PA8 5853 + 5688 5853 146536 55 1 0 17 1 0 93 chain 9316 chr15 102531392 + 35140778 35140902 L1PA8 5853 + 5720 5853 163980 23 1 0 17 1 0 36 0 11 46 chain 23820 chr15 102531392 + 35200371 35200649 AluSg7 307 + 1 293 111363 62 0 14 216 chain 112627 chr15 102531392 + 35220450 35221839 L1PA8A 6298 - 7 1406 33494 12 5 6 82 20 21 231 0 8 289 11 6 145 0 3 272 0 1 78 0 1 244 chain 22565 chr15 102531392 + 35232459 35232746 AluSp 311 + 11 297 117737 21 1 0 142 1 2 16 1 0 105 chain 93201 chr15 102531392 + 35238605 35239716 SVA_D 2077 + 922 2067 38600 25 12 0 87 1 2 6 0 1 50 1 0 104 0 1 59 0 1 2 0 73 49 31 6 13 4 0 44 1 0 622 chain 2637 chr15 102531392 + 35239001 35239032 SVA_D 2077 + 1480 1511 68598 31 chain 23627 chr15 102531392 + 35249625 35249928 AluSp 311 + 0 302 112425 78 2 7 204 3 0 8 3 0 5 chain 19265 chr15 102531392 + 35267986 35268236 AluSz 310 + 9 258 129332 33 6 0 7 0 6 120 1 0 83 chain 20956 chr15 102531392 + 35284769 35285037 AluSp 311 - 18 276 124078 11 10 0 247 chain 4477 chr15 102531392 + 35287954 35288284 LTR1D 973 - 2 476 201043 31 144 222 23 1 0 10 98 165 23 chain 21478 chr15 102531392 + 35288369 35288651 AluSp 311 - 14 300 122226 15 10 13 225 0 1 32 chain 3790 chr15 102531392 + 35290515 35290557 MER30 238 - 135 177 210521 42 chain 25467 chr15 102531392 + 35310716 35311012 AluY 311 + 5 301 102363 296 chain 21295 chr15 102531392 + 35323955 35324204 AluYk4 311 + 62 311 122879 249 chain 39571 chr15 102531392 + 35336767 35337297 LTR17 781 + 0 585 69933 71 0 8 30 12 3 215 1 0 42 0 56 57 11 12 91 chain 20566 chr15 102531392 + 35366331 35366612 L1PA16 3655 - 603 885 125411 96 0 3 31 1 0 15 4 3 134 chain 104186 chr15 102531392 + 35373682 35377760 SVA_A 1864 + 366 1864 35693 321 3 0 129 1 77 58 563 0 65 22 20 99 13 10 25 4 75 24 40 0 149 0 3 3 0 4 184 2123 0 252 chain 2691 chr15 102531392 + 35374194 35374230 SVA_A 1864 + 1062 1135 179491 15 0 37 21 chain 2115 chr15 102531392 + 35374729 35374752 SVA_A 1864 + 434 457 237493 23 chain 25497 chr15 102531392 + 35375864 35376166 AluY 311 + 0 302 102235 28 1 0 102 1 2 170 chain 3630 chr15 102531392 + 35433402 35433444 MLT2C2 476 + 432 474 213170 42 chain 27955 chr15 102531392 + 35453043 35453352 L1PA4 6152 + 5843 6152 93144 309 chain 51011 chr15 102531392 + 35514513 35515202 MER4A 717 - 0 695 58297 113 16 12 126 0 4 58 20 21 179 0 5 177 chain 77675 chr15 102531392 + 35520843 35522046 L1M1 2793 - 918 2111 44667 209 0 7 48 3 5 10 0 1 219 0 4 193 1 0 37 7 8 131 1 0 95 18 15 47 28 25 19 1 0 27 2 0 9 21 19 7 2 0 11 37 27 20 chain 28377 chr15 102531392 + 35530829 35531263 LTR7Y 441 + 0 441 91672 51 0 2 5 3 1 44 9 0 57 68 84 197 chain 262041 chr15 102531392 + 35531263 35534519 HERVH-int 3825 + 0 3120 15582 520 129 0 12 5 0 38 2 1 9 1 0 24 29 0 14 1 0 12 30 26 42 2 1 57 0 1 6 0 2 13 0 3 904 4 31 406 1 0 63 0 1 398 1 0 4 0 1 464 26 28 39 chain 4051 chr15 102531392 + 35531799 35531850 HERVH-int 3825 + 530 580 206636 40 1 0 10 chain 29717 chr15 102531392 + 35535604 35536038 LTR7Y 441 + 0 441 85775 103 9 0 57 68 84 197 chain 40133 chr15 102531392 + 35546867 35547303 LTR7Y 441 - 0 441 69133 420 0 5 16 chain 8772 chr15 102531392 + 35565374 35565648 L1PB1 5432 - 13 253 26733 17 1 0 11 1 0 21 1 0 24 17 14 5 2 0 16 39 17 5 1 0 8 1 0 44 1 0 16 2 1 41 chain 155414 chr15 102531392 + 35565648 35567918 L1PA8 5853 + 3894 5853 23934 13 0 2 25 1 0 33 15 3 77 7 11 265 12 11 89 0 3 312 0 1 63 0 7 197 0 2 349 309 0 207 1 0 46 7 5 63 2 1 9 1 0 56 1 0 16 1 0 93 chain 54076 chr15 102531392 + 35567950 35569639 L1PB1 5432 - 263 1971 26733 10 2 0 3 2 0 10 1 0 8 1 0 21 3 0 12 1 2 37 13 14 253 3 4 24 0 13 114 0 1 22 9 7 446 1 5 59 0 1 138 2 3 40 1 0 4 6 7 184 0 7 259 chain 13964 chr15 102531392 + 35573164 35573314 L1PA3long 6157 - 7 157 144697 150 chain 24353 chr15 102531392 + 35577460 35577818 THE1B 368 + 0 356 108357 169 1 0 11 14 12 81 27 28 55 chain 13938 chr15 102531392 + 35589002 35589148 AluYb8 318 - 16 162 144796 146 chain 5054 chr15 102531392 + 35616286 35616366 MIR 256 + 109 192 194587 43 7 9 17 0 1 13 chain 287566 chr15 102531392 + 35627195 35633751 L1PA11 4918 - 351 4910 14185 13 1 0 15 13 9 10 21 12 20 2 1 13 2 0 66 3 1 13 2 1 61 1 4 11 0 4 104 0 1 4 30 11 46 7 22 35 11 13 179 0 9 303 5 6 52 3 9 179 298 230 852 1837 219 101 317 0 57 2 0 67 5 2 74 15 19 170 9 12 181 9 9 490 0 1 152 0 1 4 1 0 135 27 31 178 5 7 90 16 21 18 2 1 5 2 0 29 4 3 53 2 0 11 0 2 36 4 1 29 9 7 28 1 0 6 chain 161192 chr15 102531392 + 35629570 35631385 L1PA4 6152 + 4327 6143 23153 609 0 1 1064 10 9 28 0 1 104 chain 443460 chr15 102531392 + 35644491 35649625 L1PA4 6152 - 9 6146 8939 764 1 3 1694 1 0 13 0 1 52 9 1006 811 0 2 443 7 8 1209 0 1 130 chain 175574 chr15 102531392 + 35649639 35651971 L1PBa1 4058 - 1593 3939 21388 30 1 3 22 0 1 63 0 3 215 5 3 320 27 0 12 0 33 98 1 0 188 2 1 17 11 10 749 0 1 266 2 0 11 5 14 171 4 6 55 0 1 6 8 4 43 chain 13827 chr15 102531392 + 35668570 35668789 Tigger3c 601 + 0 221 145155 20 30 31 85 0 3 7 2 0 75 chain 70913 chr15 102531392 + 35670302 35671175 L1PA7 6471 + 5582 6459 47954 24 1 0 8 0 3 418 0 1 120 0 1 151 1 2 139 1 0 10 chain 86547 chr15 102531392 + 35676966 35677977 L1PA7 6471 + 5455 6468 40953 167 0 2 404 2 3 154 0 3 273 4 0 7 chain 542809 chr15 102531392 + 35678051 35684180 L1PA4 6152 - 0 6141 2375 13 0 3 216 2 1 377 0 3 231 0 4 1365 0 1 429 1 2 583 0 1 981 1 0 144 1 2 1785 chain 9995 chr15 102531392 + 35729050 35729171 MER61-int 3695 + 2523 2648 160611 29 0 3 59 0 1 33 chain 89574 chr15 102531392 + 35732969 35734018 L1PA7 6471 + 5422 6467 39789 276 4 0 769 chain 4875 chr15 102531392 + 35764240 35764316 FAM 185 + 107 171 196538 57 12 0 7 chain 119027 chr15 102531392 + 35778890 35780526 THE1D-int 1627 - 13 1627 31399 79 14 0 79 0 1 4 6 5 146 0 3 98 13 12 583 0 1 44 3 0 111 43 45 126 0 1 98 13 1 118 3 4 55 chain 16008 chr15 102531392 + 35836512 35836712 L1PA7 6471 + 6268 6469 138329 44 3 4 153 chain 45869 chr15 102531392 + 35839992 35840628 LTR9B 643 - 0 643 62156 26 1 0 104 0 3 20 0 2 49 14 15 214 14 13 156 0 4 18 2 1 18 chain 17367 chr15 102531392 + 35882980 35883212 LTR7 482 + 164 440 134603 60 3 4 36 0 31 12 0 1 76 0 11 45 chain 16717 chr15 102531392 + 35907742 35907979 L1PA7 6471 + 6237 6469 136348 76 1 0 84 18 14 58 chain 134478 chr15 102531392 + 35947793 35949792 SVA_F 1814 + 335 1814 27114 545 1 0 56 0 1 10 179 16 207 356 0 17 1 0 207 0 1 409 1 0 10 chain 15475 chr15 102531392 + 35948406 35948582 SVA_F 1814 + 962 1138 88528 176 chain 26064 chr15 102531392 + 35948806 35949089 SVA_F 1814 + 1009 1291 99777 265 1 0 17 chain 4803 chr15 102531392 + 35949089 35949142 SVA_F 1814 + 1116 1169 114678 53 chain 136996 chr15 102531392 + 36006869 36008570 L1PA8 5853 - 0 1705 26642 91 6 5 16 2 1 52 1 0 9 2 1 68 2 0 46 2 1 96 1 0 19 0 3 51 0 6 196 0 1 182 0 2 643 1 0 153 0 1 62 chain 3250 chr15 102531392 + 36018913 36018991 MADE2 80 + 2 80 220002 24 28 28 26 chain 3176 chr15 102531392 + 36019398 36019439 MER5A1 166 + 119 160 221416 41 chain 23599 chr15 102531392 + 36088499 36088786 AluYf5 307 + 8 293 112595 28 1 0 158 0 1 65 8 6 27 chain 9447 chr15 102531392 + 36092642 36092850 L1MA8 2339 + 2075 2256 163327 19 7 0 7 30 21 42 3 0 30 10 4 35 2 0 23 chain 20729 chr15 102531392 + 36160679 36160959 MER41A 554 + 276 554 124864 147 4 5 106 3 0 20 chain 14237 chr15 102531392 + 36160959 36161144 HSMAR2 1300 - 1094 1280 143772 131 4 5 50 chain 113069 chr15 102531392 + 36170719 36172091 L1PA7 6471 - 25 1404 33357 786 0 2 37 1 0 79 1 0 71 0 1 147 0 2 121 0 4 129 chain 92566 chr15 102531392 + 36172091 36173173 L1PA7 6471 + 3963 5054 38683 46 0 1 308 0 3 344 5 13 371 3 0 5 chain 6777 chr15 102531392 + 36180480 36180553 L1PA5 6144 - 7 80 179128 73 chain 18045 chr15 102531392 + 36201754 36202017 Tigger3a 397 - 31 354 132747 29 0 11 178 0 1 8 20 68 28 chain 30322 chr15 102531392 + 36241398 36241750 L1PA7 6471 - 272 624 83860 352 chain 15307 chr15 102531392 + 36241752 36241938 L1PA7 6471 + 6212 6397 140472 96 2 1 88 chain 40564 chr15 102531392 + 36270735 36271256 MER41C 542 + 15 542 68488 34 0 1 40 0 4 220 1 2 226 chain 7854 chr15 102531392 + 36289077 36289213 MER1B 344 - 1 135 171967 21 1 0 35 7 14 10 2 0 27 6 0 27 chain 8927 chr15 102531392 + 36289224 36289336 LTR10C 591 + 0 110 165999 34 2 0 76 chain 7660 chr15 102531392 + 36292685 36292781 Tigger4a 237 + 37 133 173165 96 chain 2937 chr15 102531392 + 36322183 36322281 Eulor6B 130 + 10 110 226401 21 51 53 26 chain 20949 chr15 102531392 + 36335161 36335438 L1PA11 4918 - 469 737 124114 41 3 1 13 2 1 65 6 0 147 chain 7664 chr15 102531392 + 36337810 36337985 L1PA8 5853 + 5672 5845 173143 8 1 0 8 1 0 13 2 0 28 9 12 19 2 1 11 26 26 47 chain 2471 chr15 102531392 + 36337912 36337938 L1PA8 5853 - 55 81 213471 26 chain 94760 chr15 102531392 + 36338971 36340191 LTR12C 1709 + 0 1709 38147 215 5 4 209 8 9 127 15 16 70 0 485 82 7 11 54 2 1 426 chain 7054 chr15 102531392 + 36361003 36361094 LTR22B 500 - 398 492 177073 37 0 3 54 chain 89130 chr15 102531392 + 36380772 36381821 L1PA7 6471 - 5 1047 39950 7 3 0 32 1 2 525 0 2 198 0 2 38 8 0 39 1 0 197 chain 21294 chr15 102531392 + 36393223 36393579 THE1C 375 - 11 375 122884 14 1 0 152 3 4 17 0 1 23 7 11 24 51 54 64 chain 179860 chr15 102531392 + 36411016 36412973 L1PA2 6032 + 4065 6032 21005 164 0 4 560 0 1 194 0 5 1039 chain 13268 chr15 102531392 + 36417399 36417691 L1PA8 5853 - 0 285 147216 81 115 111 41 1 0 12 2 0 40 chain 112898 chr15 102531392 + 36430899 36432515 L1PA11 4918 - 410 2007 33403 18 9 8 7 2 0 68 2 0 13 6 5 18 1 5 38 0 3 8 16 4 166 1 0 82 1 0 152 2 12 49 0 1 184 3 1 63 4 5 258 1 0 182 12 4 11 11 8 60 19 16 74 1 0 74 chain 4071 chr15 102531392 + 36476538 36476606 MER96B 391 + 106 173 206311 18 8 7 42 chain 543138 chr15 102531392 + 36487573 36493590 L1PA3long 6157 + 1 6147 2321 151 0 1 98 0 1 525 1 129 5106 1 0 135 chain 26144 chr15 102531392 + 36506450 36506813 THE1B 368 - 4 368 99425 145 7 6 39 3 2 127 0 5 27 2 0 13 chain 99594 chr15 102531392 + 36512761 36513913 L1PA7 6471 - 177 1332 36884 162 0 1 437 0 1 452 0 1 101 chain 42372 chr15 102531392 + 36535735 36536252 L1PA10 4194 + 3648 4161 66186 9 0 1 42 0 1 4 1 0 377 1 0 34 3 0 34 1 0 11 chain 27627 chr15 102531392 + 36549090 36549392 L1PA5 6144 - 3520 3822 93664 302 chain 313567 chr15 102531392 + 36549392 36552904 L1PA5 6144 + 2616 6132 12874 548 1 0 1322 0 4 232 0 1 1409 chain 4518 chr15 102531392 + 36567075 36567128 MER6A 605 - 122 175 200578 53 chain 20362 chr15 102531392 + 36578028 36578272 LTR7 482 - 238 482 126024 18 0 1 165 5 4 56 chain 269115 chr15 102531392 + 36579533 36583073 HERVH-int 3825 - 0 3450 15227 370 0 1 124 0 210 39 9 11 1354 8 35 239 0 1 218 15 0 242 2 1 201 1 0 49 2 1 18 22 1 11 2 1 15 2 0 27 55 11 14 87 0 13 1 0 14 28 0 24 1 0 9 2 1 36 127 0 159 chain 5270 chr15 102531392 + 36582793 36582850 HERVH-int 3825 - 3292 3349 192323 57 chain 5291 chr15 102531392 + 36582853 36582914 HERVH-int 3825 - 3291 3352 182527 61 chain 20480 chr15 102531392 + 36613054 36613455 L1MA3 4352 - 0 353 125683 12 16 12 11 1 0 29 8 6 24 2 0 22 4 0 117 59 26 67 2 0 27 chain 2937 chr15 102531392 + 36613799 36614215 L1MEf 1413 - 735 1148 226390 27 6 0 6 41 52 16 299 291 21 chain 28075 chr15 102531392 + 36628931 36629309 MLT2A1 477 + 0 375 92743 169 4 1 123 0 1 4 6 5 72 chain 13489 chr15 102531392 + 36634610 36634957 THE1D 372 - 3 365 146394 145 148 163 19 0 5 6 6 1 23 chain 141066 chr15 102531392 + 36669582 36672059 L1MA3 4352 - 72 2116 25973 22 2 0 28 4 0 109 55 28 127 3 8 15 15 19 366 0 1 144 3 2 13 2 5 12 1 0 141 0 5 72 16 1 22 3 2 205 370 0 113 0 1 30 0 2 5 33 8 51 1 0 51 1 0 89 4 3 61 0 1 20 2 0 128 8 12 45 8 0 77 chain 23329 chr15 102531392 + 36670975 36671282 THE1C 375 + 8 326 114038 117 3 0 55 0 10 37 7 11 88 chain 16467 chr15 102531392 + 36702054 36702315 L1PA16 3655 - 125 394 137019 141 1 10 15 6 7 50 23 21 25 chain 28143 chr15 102531392 + 36702561 36702866 AluYk11 308 + 0 304 92490 132 1 0 172 chain 58132 chr15 102531392 + 36714106 36714788 L1PA7 6471 + 5779 6461 53910 682 chain 159491 chr15 102531392 + 36753190 36755635 L1PB3 3668 - 51 2456 23404 5 1 0 13 7 4 13 1 0 13 7 3 37 3 1 46 27 11 78 9 8 93 2 1 16 0 1 59 0 1 24 21 8 96 1 3 80 14 8 7 2 0 89 0 5 127 14 0 99 1 0 89 0 1 14 4 11 36 17 22 123 1 0 120 0 3 134 21 18 137 5 7 176 0 1 225 23 26 80 9 9 42 5 0 8 5 6 4 1 0 58 0 4 79 9 8 15 chain 25589 chr15 102531392 + 36774025 36774402 THE1C 375 - 0 374 101785 18 8 7 155 1 2 6 1 0 6 0 1 60 22 19 100 chain 4071 chr15 102531392 + 36838543 36838587 MER39 703 - 5 49 206302 44 chain 15531 chr15 102531392 + 36838644 36838983 THE1B 368 - 19 368 139799 14 30 29 55 68 77 39 26 28 107 chain 11151 chr15 102531392 + 36869181 36869311 L1PA8A 6298 + 6161 6291 155625 130 chain 5389 chr15 102531392 + 36974998 36975060 MLT2B4 540 - 468 530 191097 62 chain 215193 chr15 102531392 + 36975352 36977711 L1PA3long 6157 - 1073 3432 18153 726 0 4 642 4 0 987 chain 94738 chr15 102531392 + 36977711 36978770 L1PA3long 6157 + 5097 6157 38095 917 0 1 142 chain 6664 chr15 102531392 + 36994102 36994245 MER126 217 + 18 180 179963 46 1 0 9 22 44 38 10 8 17 chain 86023 chr15 102531392 + 37012491 37013499 L1PA6 6164 - 10 1022 41145 832 0 4 176 chain 75417 chr15 102531392 + 37054703 37055568 L1PA5 6144 - 7 877 45812 178 10 11 653 0 4 24 chain 14361 chr15 102531392 + 37063404 37063563 L1PA7 6471 + 6311 6470 143336 159 chain 10755 chr15 102531392 + 37081198 37081370 MER30 238 - 42 238 157178 58 2 0 5 7 26 69 13 20 18 chain 11649 chr15 102531392 + 37121620 37121809 MER47A 366 - 72 306 153704 135 30 75 24 chain 5067 chr15 102531392 + 37144996 37145060 U3 216 + 152 216 194452 64 chain 3202 chr15 102531392 + 37146758 37146792 L1MB1 2102 - 104 138 220904 34 chain 23952 chr15 102531392 + 37212369 37212647 AluSp 311 - 31 311 110607 166 0 2 112 chain 12521 chr15 102531392 + 37254542 37254719 MER2 342 - 20 201 150156 20 10 11 142 0 3 5 chain 22029 chr15 102531392 + 37272508 37272847 THE1B 368 - 0 368 120110 75 9 8 76 9 11 26 8 6 24 4 19 64 0 15 44 chain 29060 chr15 102531392 + 37283977 37284288 AluYa5 310 - 0 310 88719 291 1 0 19 chain 10541 chr15 102531392 + 37313126 37313366 MLT1B 390 + 75 390 158085 15 0 1 19 1 0 5 27 101 12 40 41 10 0 1 16 1 0 94 chain 22181 chr15 102531392 + 37314843 37315138 AluSg4 309 - 14 292 119439 82 28 11 185 chain 4974 chr15 102531392 + 37343071 37343131 HY3 101 - 41 101 195425 60 chain 13070 chr15 102531392 + 37364890 37365039 L1PA4 6152 - 10 159 147950 149 chain 18537 chr15 102531392 + 37461626 37461963 THE1B 368 - 0 363 131398 90 76 87 122 10 25 39 chain 134474 chr15 102531392 + 37465235 37466875 L1PA7 6471 - 799 2445 27115 45 7 6 833 7 1 34 1 8 454 0 6 259 chain 63643 chr15 102531392 + 37466875 37467653 L1PA7 6471 + 5685 6466 51094 25 1 0 146 0 3 184 0 1 422 chain 57147 chr15 102531392 + 37475129 37475901 L1PA8 5853 + 5104 5853 54433 294 34 0 116 1 0 6 2 3 39 1 0 46 2 0 70 2 1 9 1 0 48 0 17 7 1 0 93 chain 25105 chr15 102531392 + 37475911 37476224 MER41A 554 + 157 469 104262 6 1 0 306 chain 58088 chr15 102531392 + 37479079 37479798 L1PA8 5853 + 5139 5853 53930 50 0 3 372 1 0 44 2 0 71 1 0 9 1 0 12 1 0 40 2 1 19 1 0 93 chain 40394 chr15 102531392 + 37498273 37498735 L1PA5 6144 + 5677 6144 68745 101 0 5 361 chain 13784 chr15 102531392 + 37502084 37502277 L1PA8 5853 - 17 206 145322 76 1 0 19 2 1 51 2 1 9 1 0 32 chain 217362 chr15 102531392 + 37505295 37507933 L1PA7 6471 + 3822 6470 18037 7 7 0 387 0 1 51 0 1 127 0 5 238 1 0 316 0 1 392 1 0 4 1 2 176 0 3 81 0 3 83 0 2 322 0 1 128 0 1 121 0 2 24 23 24 68 0 2 6 15 13 48 3 0 8 chain 3785 chr15 102531392 + 37518841 37518887 L1PA7 6471 + 6173 6218 210589 41 1 0 4 chain 20717 chr15 102531392 + 37518887 37519136 L1PA7 6471 + 6219 6469 124906 94 0 1 155 chain 27331 chr15 102531392 + 37528461 37528829 LTR7 482 - 36 482 95166 4 0 1 90 0 7 52 0 31 36 0 1 109 8 46 69 chain 281711 chr15 102531392 + 37529951 37533451 HERVH-int 3825 - 41 3825 14550 144 1 2 153 0 7 208 0 7 845 20 32 36 0 4 245 24 29 424 1 0 71 5 0 107 1 0 36 9 0 116 13 15 212 4 10 250 4 0 48 55 324 13 8 0 113 1 0 333 chain 7727 chr15 102531392 + 37533465 37533556 LTR7 482 - 12 105 172731 5 0 2 86 chain 51953 chr15 102531392 + 37534531 37536104 L1PB1 5432 + 4591 5420 57647 25 5 8 160 13 22 196 1 0 12 0 2 87 730 2 9 1 0 24 1 0 9 17 12 8 2 0 53 3 2 14 1 0 41 34 20 30 3 1 4 1 0 14 2 0 24 1 0 21 1 4 9 1 0 16 chain 20646 chr15 102531392 + 37564661 37565023 THE1D 372 - 2 356 125142 146 2 1 23 33 34 57 6 7 24 31 22 40 chain 18167 chr15 102531392 + 37568862 37569274 L1PA11 4918 + 4249 4629 132417 13 0 4 62 2 0 67 1 0 12 7 5 58 14 12 6 1 0 15 47 36 15 1 0 13 2 0 11 12 5 11 1 0 4 20 14 17 chain 48624 chr15 102531392 + 37570237 37570933 L1PA8 5853 + 5162 5853 60013 279 0 5 70 1 0 48 1 0 44 15 13 57 20 16 45 3 2 19 1 0 93 chain 133094 chr15 102531392 + 37576371 37577847 L1PA3long 6157 - 0 1480 27406 849 0 4 627 chain 5681 chr15 102531392 + 37581383 37581517 MER20 218 - 0 125 188292 14 14 9 24 23 22 18 3 0 38 chain 9781 chr15 102531392 + 37583019 37583143 MLT1A0 366 - 6 130 161696 124 chain 548253 chr15 102531392 + 37595483 37601625 L1PA3long 6157 - 1 6153 1671 242 0 1 7 3 4 588 1 5 668 0 1 3850 0 1 623 5 7 155 chain 239164 chr15 102531392 + 37604841 37607543 L1PA4 6152 - 16 2727 16821 1588 0 1 189 0 4 276 9 13 640 chain 176668 chr15 102531392 + 37609286 37612157 L1P2 5180 + 3 2834 21284 147 1 0 25 115 122 16 294 96 34 7 173 123 34 5 40 0 1 4 1 15 175 11 28 88 43 44 109 1 0 213 0 1 511 13 6 274 14 15 59 13 0 392 1 2 113 chain 407923 chr15 102531392 + 37612168 37617329 L1P2 5180 + 2 5178 9852 148 1 0 50 1 0 44 1 0 64 41 41 97 23 15 53 2 1 50 1 0 218 0 15 69 0 9 46 0 4 29 1 0 475 1 0 829 6 8 872 1 6 108 1 6 240 3 7 183 1 0 204 0 2 217 9 0 78 1 2 128 1 0 277 1 0 378 6 4 108 1 0 49 1 0 38 1 0 4 chain 15741 chr15 102531392 + 37619065 37619246 L1PA7 6471 - 4 185 139139 181 chain 38881 chr15 102531392 + 37628552 37629000 L1PA5 6144 + 5688 6139 70894 168 0 3 280 chain 67019 chr15 102531392 + 37646411 37647148 L1PA4 6152 - 9 747 49649 442 0 1 295 chain 22953 chr15 102531392 + 37659318 37659681 THE1B 368 - 0 368 115840 25 0 1 30 7 6 63 48 53 21 1 0 55 0 1 113 chain 265984 chr15 102531392 + 37670726 37673838 L1PA5 6144 - 2 3133 15394 14 5 4 823 0 4 775 0 14 86 0 1 68 0 4 78 12 10 779 9 5 198 0 3 265 chain 69466 chr15 102531392 + 37673841 37674645 L1PA5 6144 + 2165 2979 48622 256 0 3 102 0 3 38 0 3 88 0 1 8 1 0 192 0 1 119 chain 198629 chr15 102531392 + 37677508 37679715 L1PA3long 6157 - 0 2203 19309 15 3 0 610 0 1 598 6 4 975 chain 96127 chr15 102531392 + 37683256 37684924 L1PB3 3668 - 48 1705 37786 6 1 0 15 41 33 37 3 1 24 2 1 8 1 0 13 26 11 68 38 37 20 5 6 49 1 0 191 10 9 40 9 1 47 10 7 6 0 2 108 8 19 158 0 1 29 9 8 70 8 12 53 19 37 61 28 0 15 0 3 69 0 4 51 18 33 53 7 11 81 1 0 82 6 5 29 1 0 33 chain 543285 chr15 102531392 + 37691672 37697677 L1PA2 6032 - 8 6032 2299 876 0 1 921 0 4 388 3 0 692 0 3 1476 0 2 737 0 13 175 1 0 480 1 0 23 3 4 229 chain 521763 chr15 102531392 + 37700055 37706730 L1PA7 6471 + 0 6468 4988 321 1 2 77 0 4 11 0 1 4 1 0 32 8 1 373 2 1 36 7 13 61 0 8 61 1 0 732 0 5 289 0 15 401 0 1 76 0 5 570 0 4 131 3 0 37 17 7 244 15 0 7 1 0 4 1 7 72 0 3 594 0 2 275 0 1 242 1 0 464 259 25 380 0 4 19 0 2 75 1 3 198 4 3 233 0 2 323 4 0 7 chain 29588 chr15 102531392 + 37716651 37717259 L1PB1 5432 - 9 568 86242 5 1 0 11 16 14 23 1 0 21 30 47 6 2 0 16 1 0 44 1 0 11 6 5 52 2 0 9 27 21 24 68 16 82 0 2 20 0 1 129 chain 543014 chr15 102531392 + 37719359 37725373 L1PA3long 6157 + 0 6151 2339 151 1 2 322 0 7 294 0 128 636 0 1 778 1 0 1739 0 1 2092 chain 7956 chr15 102531392 + 37734054 37734174 L1PA8 5853 - 6 124 171300 86 2 1 19 2 1 11 chain 3098 chr15 102531392 + 37734176 37734210 L1PA8 5853 + 5701 5735 222941 34 chain 19503 chr15 102531392 + 37743922 37744226 THE1C 375 + 7 321 128649 33 0 5 35 15 14 20 0 1 25 9 13 20 8 9 139 chain 390863 chr15 102531392 + 37757341 37761903 L1PA5 6144 - 0 6144 10424 18 0 1 93 0 1 653 0 1 82 0 4 75 0 1 720 0 1554 923 0 1 446 0 3 305 0 1 345 0 1 782 6 20 114 chain 418331 chr15 102531392 + 37764777 37769374 L1PA3long 6157 + 1546 6149 9577 1943 0 1 473 0 2 328 0 2 887 0 1 966 chain 24846 chr15 102531392 + 37775173 37775530 THE1B 368 - 0 368 105645 75 9 8 111 4 2 4 1 0 58 1 2 4 1 0 49 0 15 40 chain 12181 chr15 102531392 + 37777193 37777353 THE1B 368 - 24 184 151488 40 0 1 9 1 0 110 chain 10966 chr15 102531392 + 37777378 37777511 THE1B 368 - 207 355 156336 102 0 15 31 chain 217051 chr15 102531392 + 37794534 37797701 L1PA10 4194 + 175 3282 18055 13 3 0 11 3 0 8 2 0 9 49 41 14 2 0 16 1 0 7 52 41 21 24 24 13 39 28 4 1 0 20 1 0 4 0 1 32 22 9 198 18 15 322 0 1 264 4 0 177 3 4 325 1 2 26 6 3 393 0 1 55 0 2 241 7 1 85 5 6 16 0 2 42 21 23 34 0 1 226 0 1 173 2 0 152 chain 110737 chr15 102531392 + 37799231 37800646 L1PA8 5853 - 955 2427 34018 229 4 5 265 0 1 20 8 9 117 5 3 55 0 1 254 0 50 32 2 1 48 0 2 31 0 4 345 chain 71255 chr15 102531392 + 37806857 37807624 L1PA3long 6157 - 26 793 47827 767 chain 23613 chr15 102531392 + 37807627 37807885 L1PA3long 6157 + 5088 5346 112513 258 chain 396463 chr15 102531392 + 37823862 37828373 L1PA4 6152 + 1634 6152 10219 685 0 1 312 0 1 14 0 1 14 0 1 1421 0 1 589 0 1 501 0 1 450 2 0 364 2 0 9 0 2 6 1 2 133 0 1 8 chain 29794 chr15 102531392 + 37862282 37862592 AluYa5 310 - 0 310 85480 310 chain 23124 chr15 102531392 + 37896086 37896388 AluY 311 + 0 301 115020 10 3 0 122 0 1 133 1 3 6 1 0 26 chain 22345 chr15 102531392 + 37911038 37911317 L1PA6 6164 - 2 284 118725 6 2 0 22 0 1 105 1 5 143 chain 7532 chr15 102531392 + 37911317 37911400 L1PA6 6164 + 5791 5874 173961 83 chain 16859 chr15 102531392 + 37911431 37911702 L1PA16 3655 - 883 1158 135946 16 1 0 4 19 25 48 11 10 172 chain 44227 chr15 102531392 + 37913256 37913750 L1PA3long 6157 - 580 1078 63913 174 0 3 93 0 1 227 chain 54173 chr15 102531392 + 37913751 37914349 L1PA3long 6157 + 5559 6157 56245 598 chain 4130 chr15 102531392 + 37949922 37949973 L1MA9 1812 + 1270 1321 205494 51 chain 27878 chr15 102531392 + 37952176 37952484 AluYb8 318 + 0 307 93428 123 1 0 184 chain 12544 chr15 102531392 + 37971433 37971585 L1PA5 6144 + 5984 6129 150064 11 7 0 134 chain 21814 chr15 102531392 + 38010006 38010355 L1PA8 5853 - 0 338 120962 82 12 11 19 2 1 32 2 0 20 2 1 8 2 1 12 0 2 56 2 0 44 1 0 17 0 1 17 6 1 13 chain 7068 chr15 102531392 + 38011148 38011298 MLT1B 390 + 60 227 176959 21 38 51 17 7 11 67 chain 5109 chr15 102531392 + 38038317 38038373 L1PA2 6032 + 5976 6032 193981 56 chain 23689 chr15 102531392 + 38066728 38067018 AluY 311 + 20 311 112086 111 1 2 178 chain 127154 chr15 102531392 + 38070123 38071801 L1P2 5180 + 804 2491 28778 83 1 2 50 15 33 65 7 8 4 1 0 191 0 1 136 5 9 247 6 0 5 0 1 688 17 7 157 chain 20884 chr15 102531392 + 38098815 38099151 THE1B 368 + 0 368 124340 44 0 15 48 0 1 64 1 0 21 1 0 5 44 54 54 5 13 49 chain 36672 chr15 102531392 + 38123867 38124366 L1PA8 5853 - 0 493 73995 92 13 12 5 1 0 51 2 1 12 1 0 72 2 0 44 1 0 120 1 2 82 chain 4601 chr15 102531392 + 38141963 38142034 L1PA16 3655 + 2785 2858 199614 15 5 7 51 chain 61894 chr15 102531392 + 38156273 38157121 LTR12 884 + 0 884 51949 313 25 0 23 22 6 35 2 0 57 24 0 117 0 103 230 chain 2011 chr15 102531392 + 38156586 38156611 LTR12 884 + 247 272 114802 25 chain 6346 chr15 102531392 + 38185204 38185274 L1PA5 6144 - 4 74 182412 70 chain 406719 chr15 102531392 + 38207860 38213597 L1PB1 5432 - 12 5399 9885 16 1 0 8 6 5 21 1 0 23 2 0 15 8 5 19 19 8 4 1 0 16 1 0 43 1 0 18 1 0 52 3 1 8 4 0 11 1 0 9 1 0 24 13 13 196 1 3 11 6 7 68 5 4 188 3 0 533 0 1 134 6 5 38 0 1 5 2 1 4 0 1 26 0 2 137 0 5 709 0 1 179 1 0 7 0 1 5 0 6 99 0 1 172 5 10 47 7 0 125 0 2 11 1 2 109 1 0 4 12 1 124 324 11 62 0 1 138 2 1 282 0 1 8 0 3 5 7 6 201 20 5 96 8 9 255 1 0 5 0 1 53 1 0 370 0 1 29 2 0 311 0 1 131 0 2 95 chain 81724 chr15 102531392 + 38216060 38217074 L1PA7 6471 + 5448 6468 42880 85 1 2 12 0 1 73 1 0 78 1 3 192 0 2 534 4 3 23 0 2 10 chain 9951 chr15 102531392 + 38231203 38231314 L1PA5 6144 - 1 112 160828 111 chain 129771 chr15 102531392 + 38237728 38239413 L1PA11 4918 - 401 2096 28137 12 4 0 17 1 0 8 0 1 7 2 0 65 1 0 13 3 2 61 1 0 235 0 3 252 1 6 139 0 1 267 0 1 72 8 9 41 1 9 376 0 1 88 1 0 9 chain 319181 chr15 102531392 + 38247629 38251477 L1PA7 6471 + 2642 6470 12628 42 4 2 898 0 3 24 0 1 45 0 1 177 0 1 837 0 2 53 1 0 442 0 1 432 0 1 15 17 14 67 0 2 40 29 0 517 0 1 17 0 2 191 chain 282928 chr15 102531392 + 38252227 38256072 L1PB1 5432 - 8 3776 14476 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 67 29 7 3 0 16 1 0 43 19 17 53 2 0 8 2 0 3 2 0 12 1 0 6 1 0 24 1 0 5 16 15 112 6 9 347 2 0 44 10 0 618 0 2 29 0 3 48 0 1 61 0 2 98 0 1 48 5 1 465 0 1 250 15 11 9 0 4 95 3 0 114 25 23 6 0 2 195 13 0 64 0 1 520 1 2 252 chain 108008 chr15 102531392 + 38256798 38258305 L1MA2 4263 + 2595 4097 34710 55 14 16 491 5 6 210 0 5 189 8 7 10 8 5 149 0 1 9 0 3 55 3 0 129 32 30 93 7 0 16 1 0 23 chain 12797 chr15 102531392 + 38262038 38262335 L1PA15 4387 - 35 322 149066 20 11 5 10 10 18 25 10 7 49 9 8 8 4 0 10 11 10 51 2 0 26 6 5 35 chain 121894 chr15 102531392 + 38262687 38264251 THE1B-int 1605 - 8 1605 30415 833 9 0 8 6 15 122 3 4 24 12 15 111 0 2 12 2 29 422 chain 20221 chr15 102531392 + 38264251 38264590 THE1B 368 - 0 368 126468 113 84 98 98 0 15 44 chain 5441 chr15 102531392 + 38283930 38284360 L1PREC2 3366 + 2922 3242 190601 29 4 1 11 22 8 32 277 193 19 8 3 8 4 0 16 chain 24330 chr15 102531392 + 38302294 38302607 AluY 311 + 2 305 108485 121 3 0 9 0 1 89 1 2 22 8 0 36 1 0 23 chain 26677 chr15 102531392 + 38307099 38307471 MLT2A1 477 - 94 477 97401 137 3 5 67 1 5 14 12 13 123 0 4 15 chain 97244 chr15 102531392 + 38318274 38319847 THE1A-int 1579 + 0 1574 37500 129 319 0 12 0 318 34 5 6 145 6 8 4 0 1 876 1 0 29 2 1 11 chain 21803 chr15 102531392 + 38324195 38324447 AluSp 311 - 51 303 121006 252 chain 9189 chr15 102531392 + 38359426 38359547 MER85 139 + 8 139 164611 82 1 11 38 chain 352614 chr15 102531392 + 38388616 38393784 L1PA8 5853 + 1173 5853 11533 311 13 14 49 134 0 443 10 8 25 7 0 345 14 6 22 8 7 123 25 5 347 357 13 117 0 3 183 0 4 122 0 2 219 0 1 30 0 1 351 0 3 65 0 2 312 6 15 158 0 5 122 0 1 192 7 8 24 0 1 101 1 0 73 4 7 31 34 40 282 9 0 25 1 3 170 1 0 46 2 0 65 11 10 5 1 0 44 8 7 19 2 1 92 chain 532101 chr15 102531392 + 38411625 38418369 L1PA7 6471 + 0 6468 3948 411 0 1 520 5 6 160 7 5 242 1 0 5 12 13 73 1 0 871 0 11 180 29 31 106 7 0 461 0 4 403 1 0 279 0 1 46 0 1 170 1 0 30 0 1 104 0 1 793 0 9 11 1 0 167 0 8 88 0 1 67 0 1 81 7 1 135 0 1 53 1 0 50 1 5 14 0 4 126 0 1 342 308 0 374 chain 5353 chr15 102531392 + 38426091 38426199 MER5A 189 - 76 186 191503 19 28 32 11 2 0 48 chain 554706 chr15 102531392 + 38428877 38435041 L1PA3long 6157 - 5 6153 863 937 24 0 2191 1 0 704 0 1 475 0 4 1212 0 1 55 0 4 85 2 1 234 0 1 4 1 0 239 chain 29067 chr15 102531392 + 38449735 38450172 L1PA16 3655 + 3204 3618 88687 76 12 10 85 1 2 202 3 0 14 24 5 20 chain 3720 chr15 102531392 + 38482959 38483003 MADE1 96 - 50 94 211641 44 chain 9757 chr15 102531392 + 38555918 38556096 MER30 238 - 3 198 161815 27 9 12 42 16 38 8 8 0 68 chain 5599 chr15 102531392 + 38565406 38565466 L1PA16 3655 + 2518 2578 189092 60 chain 25490 chr15 102531392 + 38582727 38583082 THE1A 353 - 0 353 102271 139 3 0 5 1 2 4 0 1 92 8 7 103 chain 116818 chr15 102531392 + 38583091 38584621 THE1A-int 1579 - 9 1579 32188 137 0 1 284 0 1 226 0 2 422 1 2 7 1 0 40 8 10 14 7 11 255 0 27 21 6 9 101 chain 24614 chr15 102531392 + 38584632 38584972 THE1A 353 - 11 353 106914 64 1 0 66 1 4 6 1 0 5 0 3 83 1 0 88 1 0 23 chain 14768 chr15 102531392 + 38628783 38629124 L1PB1 5432 + 5113 5422 142037 25 1 0 6 1 0 12 2 0 3 2 0 9 2 0 9 0 3 40 2 1 15 11 0 43 3 2 15 63 50 24 1 0 21 1 0 10 0 1 20 chain 22443 chr15 102531392 + 38652445 38652710 AluSp 311 - 10 275 118279 44 0 1 128 1 0 92 chain 39542 chr15 102531392 + 38671331 38671786 L1PA6 6164 - 7 462 69969 455 chain 41810 chr15 102531392 + 38695870 38696615 L1PB1 5432 - 12 626 66878 16 1 0 13 1 0 21 1 0 16 10 8 14 1 0 5 2 0 29 18 7 11 1 0 44 1 0 15 2 1 51 16 0 10 5 1 12 1 0 11 58 0 21 41 11 297 chain 3307 chr15 102531392 + 38700037 38700125 LTR79 453 - 38 125 218825 24 31 31 9 1 0 23 chain 92930 chr15 102531392 + 38707181 38708366 L1PA8 5853 - 0 1198 38677 92 2 1 19 2 1 52 1 0 9 2 1 70 5 3 41 1 0 91 13 18 297 0 1 145 0 2 19 0 4 271 0 8 53 chain 8139 chr15 102531392 + 38716916 38717035 MER30 238 - 40 207 170292 24 0 30 12 7 25 76 chain 11754 chr15 102531392 + 38717708 38717897 MLT1D 503 + 249 439 153247 63 1 2 27 1 0 15 24 25 58 chain 6676 chr15 102531392 + 38723280 38723362 MER2 342 - 128 211 179860 78 0 1 4 chain 41514 chr15 102531392 + 38730101 38730593 HERV1_LTRc 486 - 0 486 67263 391 6 0 95 chain 20593 chr15 102531392 + 38734956 38735302 THE1D 372 + 15 372 125322 145 79 91 89 1 0 32 chain 42398 chr15 102531392 + 38739545 38740223 L1PB2 3958 + 3164 3836 66151 36 1 7 50 0 1 49 2 0 56 10 11 65 2 0 12 4 0 30 0 1 63 26 25 31 17 16 50 1 0 12 1 0 74 2 0 14 20 19 50 chain 8867 chr15 102531392 + 38767338 38767475 MER1B 344 - 0 139 166299 58 21 23 58 chain 5628 chr15 102531392 + 38776160 38776280 L1MA5A 2387 - 39 148 188792 7 1 0 11 1 0 13 11 14 7 12 0 57 chain 30406 chr15 102531392 + 38831775 38832106 L1PA3long 6157 - 1 332 83674 331 chain 7003 chr15 102531392 + 38834458 38834541 HY3 101 + 15 99 177442 72 0 1 11 chain 537706 chr15 102531392 + 38859830 38866229 L1PA7 6471 - 12 6471 3205 139 5 0 6 0 6 634 0 3 591 4 2 406 0 4 836 2 0 129 0 9 87 0 1 24 0 1 95 7 2 726 0 2 121 1 2 185 0 1 131 0 18 952 5 6 322 0 1 4 1 0 84 1 2 25 8 34 465 1 0 193 0 1 209 chain 528939 chr15 102531392 + 38872936 38879069 L1PA5 6144 + 0 6140 4309 121 0 14 1014 0 3 17 9 0 353 1 0 4 0 1 138 0 2 626 0 1 19 3 1 944 0 2 293 6 0 121 0 1 6 0 2 1845 6 5 607 chain 66109 chr15 102531392 + 38887890 38888621 L1P1 4361 - 1388 2119 50049 731 chain 52923 chr15 102531392 + 38888631 38889222 L1PA4 6152 + 5549 6143 57072 142 0 2 345 0 1 104 chain 26990 chr15 102531392 + 38891839 38892386 MER34C_ 573 - 6 568 96316 4 1 0 5 1 0 21 0 7 92 2 1 12 13 0 16 103 99 4 0 1 44 18 13 11 1 23 67 0 10 132 chain 23467 chr15 102531392 + 38909309 38909599 AluSp 311 + 9 299 113279 185 0 1 86 2 1 17 chain 26377 chr15 102531392 + 38911601 38911878 AluYa5 310 - 5 282 98506 277 chain 39829 chr15 102531392 + 38917409 38917856 L1PA5 6144 - 3 450 69578 447 chain 12237 chr15 102531392 + 38933196 38933372 MER30 238 - 0 189 151269 43 3 0 61 10 0 10 0 26 49 chain 60298 chr15 102531392 + 38970607 38971449 MER4D1 891 + 47 878 52683 88 9 7 291 11 15 148 3 7 62 9 1 65 9 0 147 chain 26945 chr15 102531392 + 38974359 38974723 THE1A 353 - 0 353 96470 118 17 8 25 1 0 93 1 0 109 chain 6324 chr15 102531392 + 38998711 38998911 MER2 342 - 118 341 182602 67 108 131 25 chain 3409 chr15 102531392 + 39017463 39017504 L1MB7 1623 + 1388 1429 216937 41 chain 28291 chr15 102531392 + 39041991 39042306 AluYb8 318 + 0 306 91979 132 2 0 110 7 0 64 chain 504049 chr15 102531392 + 39065820 39071912 L1PA6 6164 - 10 6164 6597 742 5 8 89 2 0 15 1 5 782 1 0 138 6 14 381 5 9 229 5 6 213 2 1 249 0 3 80 0 1 4 1 2 389 0 5 464 1 0 461 0 5 52 0 1 251 0 1 144 0 1 453 6 0 132 0 17 27 0 1 4 8 7 239 0 5 97 6 18 231 1 2 176 chain 540390 chr15 102531392 + 39074950 39080960 L1PA3long 6157 + 1 6156 2758 280 0 1 4 2 1 489 0 128 1372 0 5 448 5 7 530 0 4 22 0 1 651 0 1 417 0 4 1790 chain 13565 chr15 102531392 + 39081054 39081275 L1PA8 5853 - 0 216 146108 92 5 4 13 1 0 43 29 26 38 chain 517099 chr15 102531392 + 39089696 39096117 L1PA7 6471 - 19 6455 5473 141 3 0 3 4 0 21 0 2 8 3 2 571 0 1 79 0 3 115 0 3 64 0 1 35 0 2 725 0 2 321 0 3 904 8 12 801 0 1 114 18 19 14 15 11 303 0 5 36 2 0 141 0 1 1206 0 1 97 8 7 273 0 1 189 0 2 5 9 6 185 chain 108851 chr15 102531392 + 39105701 39106982 L1PA6 6164 + 4883 6162 34475 528 1 4 610 2 0 126 4 1 10 chain 3071 chr15 102531392 + 39114333 39114475 MLT1H 522 - 0 158 223544 38 89 105 15 chain 209425 chr15 102531392 + 39123788 39126386 L1PA7 6471 - 1 2630 18534 12 0 2 137 35 0 7 1 35 12 0 3 153 0 1 96 2 3 108 0 1 163 0 12 21 0 1 86 0 3 350 0 5 310 1 0 112 0 1 4 1 0 26 0 2 317 0 3 129 1 5 438 5 0 71 chain 548413 chr15 102531392 + 39127161 39133286 L1PA3long 6157 - 10 6151 1651 43 0 8 1679 0 5 467 0 1 651 0 1 85 1 0 453 2 0 247 0 1 1336 0 3 1161 chain 78941 chr15 102531392 + 39143815 39144732 L1PA5 6144 - 0 928 44044 11 2 7 235 0 1 84 0 1 504 0 4 81 chain 99327 chr15 102531392 + 39144732 39145850 L1PA5 6144 + 4090 5209 36947 820 0 1 298 chain 4314 chr15 102531392 + 39151618 39151684 MADE1 96 + 7 96 203042 29 1 17 16 0 7 20 chain 86607 chr15 102531392 + 39172911 39174042 L1PA8 5853 + 4709 5853 40926 107 7 8 4 1 0 159 0 4 16 0 7 78 1 7 272 0 3 190 1 0 45 2 0 70 1 0 8 0 6 7 8 1 38 3 2 19 1 0 93 chain 5748 chr15 102531392 + 39183828 39183916 L1PA10 4194 + 4077 4161 187656 37 6 3 33 1 0 11 chain 9045 chr15 102531392 + 39199710 39199821 L1PA8 5853 - 1 112 165346 5 0 1 86 1 0 19 chain 3193 chr15 102531392 + 39199827 39199861 L1P3 4156 + 3031 3065 221048 34 chain 173625 chr15 102531392 + 39229492 39232256 L1PB1 5432 + 2986 5421 21634 251 1 0 29 7 8 302 1 7 142 7 20 319 0 7 534 0 4 17 5 0 235 300 0 153 4 6 78 6 7 11 22 1 21 6 5 15 5 1 9 2 0 6 13 4 42 18 16 24 0 1 19 1 0 16 1 0 6 16 6 18 3 1 5 1 0 14 2 0 24 1 0 16 0 1 4 3 2 11 1 0 17 chain 18670 chr15 102531392 + 39258944 39259180 THE1B-int 1605 - 1366 1605 131032 162 0 1 59 4 6 11 chain 10640 chr15 102531392 + 39260926 39261063 L1P4 1494 + 1048 1185 157651 18 1 0 4 0 1 114 chain 29100 chr15 102531392 + 39267048 39267358 AluYa5 310 - 0 309 88552 192 1 0 117 chain 6236 chr15 102531392 + 39268851 39268920 L1PA2 6032 + 5959 6028 183271 69 chain 50756 chr15 102531392 + 39293849 39294424 L1P1 4361 - 83 660 58459 128 1 0 212 5 8 229 chain 19069 chr15 102531392 + 39294424 39294634 L1PA3long 6157 + 5793 6003 129910 210 chain 14572 chr15 102531392 + 39294641 39294795 L1PA3long 6157 + 6003 6157 142676 154 chain 197743 chr15 102531392 + 39294873 39297555 L1PA10 4194 + 1287 4082 19376 60 12 15 114 1 0 322 32 12 24 0 4 116 0 1 81 1 0 101 13 17 68 0 4 34 1 20 84 1 4 111 0 4 18 6 5 136 0 13 12 0 8 104 2 6 399 0 5 111 0 59 76 0 1 8 0 3 97 3 5 338 7 2 67 1 2 22 9 12 90 chain 26974 chr15 102531392 + 39297562 39297875 AluYa5 310 - 15 310 96360 50 3 0 113 15 0 132 chain 50310 chr15 102531392 + 39303234 39303821 LTR14C 587 + 0 587 58783 587 chain 23222 chr15 102531392 + 39307722 39308011 HERVK22-int 3844 + 1554 1842 114590 269 1 0 19 chain 6106 chr15 102531392 + 39308011 39308082 U3 216 + 0 71 184368 71 chain 4346 chr15 102531392 + 39324565 39324740 L1MC4 1079 + 74 248 202637 27 110 109 38 chain 169723 chr15 102531392 + 39328047 39329939 L1PA3long 6157 - 0 1888 22086 15 3 0 67 0 1 48 0 1 21 7 0 690 0 4 1041 chain 80764 chr15 102531392 + 39337621 39338943 L1PB1 5432 + 4163 5420 43284 34 13 15 15 0 1 68 1 2 315 9 5 11 0 1 84 1 0 119 11 15 204 2 1 50 109 67 50 2 1 16 1 0 44 1 0 15 1 0 5 53 36 9 2 0 16 9 0 7 0 8 14 1 0 13 1 0 16 chain 9988 chr15 102531392 + 39340328 39340434 L1PA3long 6157 + 6051 6157 160646 106 chain 42442 chr15 102531392 + 39349498 39350107 L1PB2 3958 + 3241 3838 66087 66 14 12 39 0 3 16 8 4 58 2 0 13 2 0 6 2 0 87 1 0 51 3 4 17 1 0 31 0 1 33 1 0 30 1 2 39 2 0 22 1 0 63 chain 3452 chr15 102531392 + 39370315 39370357 MLT2C1 407 - 360 402 216189 42 chain 5938 chr15 102531392 + 39381478 39381658 MER34 540 - 44 222 185798 59 95 93 26 chain 10799 chr15 102531392 + 39395549 39395696 THE1D 372 + 225 372 156996 116 0 2 5 3 1 23 chain 18399 chr15 102531392 + 39398213 39398518 L1PA14 3548 - 92 392 131791 42 1 0 16 1 0 5 1 0 15 4 2 26 11 8 11 1 0 70 0 5 32 6 5 63 chain 23093 chr15 102531392 + 39404696 39405058 THE1D 372 + 10 372 115178 5 3 0 33 28 16 104 0 4 6 11 22 135 1 0 15 0 1 21 chain 5326 chr15 102531392 + 39441070 39441171 L1MA9 1812 + 1567 1665 191761 10 4 3 36 8 6 43 chain 310654 chr15 102531392 + 39513172 39516613 L1PA3long 6157 + 2706 6155 12979 4 0 1 477 0 1 330 0 1 177 0 2 185 1 0 647 0 3 101 0 1 1519 chain 25242 chr15 102531392 + 39518658 39519031 THE1C 375 + 0 369 103519 43 0 1 33 35 34 14 3 0 225 1 0 19 chain 30558 chr15 102531392 + 39520113 39520431 AluYb8 318 + 0 318 83300 318 chain 44662 chr15 102531392 + 39525639 39526163 L1PA7 6471 + 5944 6470 63419 116 0 1 187 0 1 221 chain 3709 chr15 102531392 + 39526426 39526472 MER67A 545 + 475 522 211820 6 0 1 40 chain 19246 chr15 102531392 + 39529077 39529373 THE1D 372 + 0 360 129392 46 10 1 27 12 13 79 8 80 114 chain 7029 chr15 102531392 + 39533506 39533636 L1MB3 1562 - 185 318 177257 26 1 0 12 8 9 61 1 0 4 6 10 11 chain 21216 chr15 102531392 + 39533951 39534194 L1PA4 6152 - 1 245 123153 147 0 1 96 chain 8694 chr15 102531392 + 39534199 39534295 L1PA4 6152 + 5799 5895 167223 96 chain 223422 chr15 102531392 + 39549519 39552001 L1PA3long 6157 + 3656 6136 17691 1256 1 0 210 1 0 1014 chain 179515 chr15 102531392 + 39553972 39556106 L1PA6 6164 + 3996 6152 21028 369 0 4 406 4 0 352 0 1 175 0 15 33 0 1 67 0 1 69 0 4 455 5 4 194 0 1 5 chain 51325 chr15 102531392 + 39560132 39560716 L1PA5 6144 + 5548 6132 58083 584 chain 21174 chr15 102531392 + 39571115 39571372 AluY 311 + 43 294 123291 90 7 1 160 chain 62015 chr15 102531392 + 39573650 39574362 L1PA5 6144 - 0 712 51892 712 chain 55053 chr15 102531392 + 39574365 39574991 L1PA5 6144 + 4714 5340 55671 626 chain 21179 chr15 102531392 + 39580736 39581285 L1PB1 5432 + 5004 5420 123281 47 1 0 52 0 3 10 111 0 21 1 0 9 1 0 12 5 1 9 2 0 8 3 7 36 19 17 41 43 31 20 2 0 4 1 0 14 2 0 6 1 3 17 1 0 19 1 0 13 1 0 16 chain 91458 chr15 102531392 + 39585116 39586841 L1PREC2 3366 - 320 1752 39148 36 6 4 15 1 0 20 35 20 28 2 0 13 77 60 43 30 15 5 0 1 34 2 0 41 1 0 172 261 3 35 19 17 126 3 20 192 0 1 64 0 2 138 1 2 83 0 1 31 2 3 77 0 1 61 3 0 68 chain 3717 chr15 102531392 + 39604594 39604635 U2 167 - 113 154 211665 41 chain 52370 chr15 102531392 + 39604635 39605265 L1PA7 6471 + 5820 6463 57382 311 1 0 49 0 1 23 0 3 91 1 13 147 2 0 5 chain 2924 chr15 102531392 + 39610544 39610728 MERX 374 - 120 340 226602 15 5 4 14 121 158 29 chain 91595 chr15 102531392 + 39662459 39663523 MER11C 1089 - 16 1089 39095 381 0 4 371 0 4 62 0 1 250 chain 42678 chr15 102531392 + 39679194 39679670 L1PA4 6152 + 5664 6140 65801 79 0 1 93 1 0 303 chain 68702 chr15 102531392 + 39710710 39711862 L1PB1 5432 - 8 1136 48942 4 1 0 16 1 0 9 0 3 22 5 4 20 2 0 12 14 11 14 26 15 14 1 0 42 2 1 16 2 1 50 3 1 11 59 42 13 3 0 12 0 4 24 1 2 8 2 1 5 0 1 41 1 0 297 2 3 75 0 1 4 16 26 103 32 33 167 chain 554985 chr15 102531392 + 39712771 39718786 L1PA2 6032 + 7 6032 829 2190 0 1 941 0 5 2870 0 4 14 chain 48298 chr15 102531392 + 39728947 39729604 L1PA8 5853 - 0 628 60245 15 0 1 77 1 0 19 3 2 51 1 0 9 3 2 69 2 0 46 1 0 103 6 9 134 26 0 91 chain 24145 chr15 102531392 + 39795380 39795741 THE1D 372 - 0 372 109499 148 1 0 25 28 30 94 8 18 57 chain 5449 chr15 102531392 + 39814018 39814082 L1PA2 6032 - 2296 2360 184851 64 chain 206585 chr15 102531392 + 39814082 39816324 L1PA2 6032 + 3766 6012 18750 463 0 4 1779 chain 44066 chr15 102531392 + 39821986 39822527 MLT2A2 560 - 7 560 64140 47 0 1 4 1 0 88 0 11 197 0 1 204 chain 15510 chr15 102531392 + 39849111 39849297 MER107 203 + 0 196 139859 159 0 10 27 chain 15790 chr15 102531392 + 39855591 39855833 Tigger3a 397 + 35 327 138981 40 28 78 174 chain 22020 chr15 102531392 + 39860973 39861308 L1PA16 3655 - 36 343 120141 16 5 0 7 10 0 4 10 0 14 3 0 189 0 2 5 2 0 70 chain 24434 chr15 102531392 + 39927262 39927548 AluSc5 308 + 8 293 107892 131 1 0 154 chain 3171 chr15 102531392 + 39938367 39938446 MER52C 1267 + 871 956 221548 27 24 31 12 1 0 15 chain 18711 chr15 102531392 + 39940172 39940380 L1PA2 6032 + 5822 6030 130920 208 chain 13144 chr15 102531392 + 39944905 39945073 Tigger3b 1229 - 89 267 147672 137 0 10 31 chain 25110 chr15 102531392 + 39945783 39946112 THE1B 368 + 42 368 104231 134 1 0 17 2 0 100 1 0 59 0 1 15 chain 10487 chr15 102531392 + 39995803 39995944 L1PA8 5853 + 5713 5853 158298 27 2 1 19 1 0 51 0 1 41 chain 27870 chr15 102531392 + 40007852 40008276 MSTA 426 + 0 426 93455 26 0 1 105 11 12 17 9 5 40 2 0 30 2 0 64 15 23 103 chain 111108 chr15 102531392 + 40019925 40021487 L1PA15 4387 + 2609 4208 33908 80 2 1 74 0 1 229 0 1 4 1 0 168 8 6 249 1 0 7 0 1 88 0 25 21 0 1 4 2 1 114 0 5 41 4 7 76 2 0 14 23 34 29 2 0 23 2 1 19 5 4 103 5 9 51 6 5 22 5 4 54 1 0 23 chain 5619 chr15 102531392 + 40028287 40028393 Tigger3b 1229 - 1116 1228 188882 59 27 33 20 chain 10166 chr15 102531392 + 40080939 40081061 LTR47A 437 - 13 135 159771 122 chain 14000 chr15 102531392 + 40103650 40103837 Tigger4a 237 - 1 189 144582 52 5 6 130 chain 25106 chr15 102531392 + 40103845 40104133 AluY 311 + 10 299 104251 122 0 1 166 chain 182100 chr15 102531392 + 40130720 40132844 L1PA5 6144 + 3818 6141 20772 507 0 198 268 0 8 600 8 5 731 4 0 6 chain 23323 chr15 102531392 + 40166970 40167254 AluSp 311 + 8 293 114071 185 0 1 99 chain 3052 chr15 102531392 + 40182363 40182401 MER63B 433 + 395 433 223975 38 chain 153207 chr15 102531392 + 40185298 40187420 SVA_F 1814 - 2 1814 24200 10 5 0 4 0 1 659 0 1 143 2 0 32 0 15 45 50 23 4 1 0 20 312 30 128 1 2 327 11 0 368 chain 4735 chr15 102531392 + 40186198 40186248 SVA_F 1814 - 721 771 139795 50 chain 17761 chr15 102531392 + 40186350 40186545 SVA_F 1814 - 698 908 133539 154 0 15 41 chain 12811 chr15 102531392 + 40189800 40189935 AluYb8 318 - 5 140 149014 135 chain 42822 chr15 102531392 + 40195988 40196529 MER41A 554 - 0 541 65624 19 1 2 51 17 16 453 chain 6821 chr15 102531392 + 40214993 40215080 HY3 101 - 10 96 178783 44 4 3 39 chain 9818 chr15 102531392 + 40227169 40227319 MER30 238 - 1 191 161505 35 0 27 52 5 0 7 4 22 47 chain 9032 chr15 102531392 + 40270809 40270948 MER30 238 - 0 152 165430 103 5 0 7 4 22 20 chain 216490 chr15 102531392 + 40274749 40277631 L1PA7 6471 - 1 2584 18089 4 1 0 61 0 1 21 0 1 81 9 5 99 0 5 50 6 5 412 3 0 101 0 3 39 306 0 1003 0 2 6 1 0 619 1 6 59 chain 17121 chr15 102531392 + 40277636 40277838 L1PA7 6471 + 3651 3862 135252 190 0 9 12 chain 23686 chr15 102531392 + 40305636 40305986 THE1B 368 - 61 368 112115 63 40 0 52 2 0 9 1 0 4 0 1 9 1 0 169 chain 115349 chr15 102531392 + 40305986 40307456 THE1B-int 1605 - 0 1605 32665 451 14 122 250 4 0 80 1 0 5 1 2 231 7 32 43 0 1 359 0 5 24 chain 5098 chr15 102531392 + 40320613 40320675 MER20 218 + 22 84 194103 62 chain 113080 chr15 102531392 + 40366151 40367535 LTR12C 1709 - 0 1707 33355 260 0 9 43 14 7 65 8 7 90 0 4 107 9 325 478 1 0 4 0 1 90 0 1 113 0 1 102 chain 3349 chr15 102531392 + 40377886 40377924 MLT1F2 592 + 489 527 218073 38 chain 24380 chr15 102531392 + 40407378 40407683 AluSp 311 + 0 303 108198 94 5 4 16 1 0 189 chain 11441 chr15 102531392 + 40430196 40430359 MLT1B 390 + 222 388 154530 59 6 0 6 0 9 92 chain 160499 chr15 102531392 + 40430648 40432398 L1PA4 6152 - 821 2573 23269 30 0 1 1361 0 1 359 chain 70309 chr15 102531392 + 40432398 40433194 L1PA4 6152 + 5357 6152 48216 639 1 0 156 chain 24548 chr15 102531392 + 40445211 40445514 AluSp 311 - 10 311 107264 10 2 0 291 chain 4236 chr15 102531392 + 40471627 40471677 HY4 93 - 10 60 204079 50 chain 96721 chr15 102531392 + 40487207 40488635 L1PB1 5432 - 9 1403 37640 19 1 0 10 30 28 20 2 0 14 1 0 4 4 2 17 25 15 14 1 0 44 1 0 15 2 1 52 2 0 9 22 17 4 1 0 22 7 0 7 1 6 79 0 1 344 0 3 48 3 0 291 4 0 27 1 0 85 5 6 190 chain 13366 chr15 102531392 + 40597393 40597569 L1PA8 5853 - 0 174 146830 52 0 1 39 2 1 18 1 0 53 1 0 10 chain 5330 chr15 102531392 + 40623772 40623849 5S 121 - 34 121 191722 46 6 16 25 chain 43678 chr15 102531392 + 40633625 40634396 Tigger3b 1229 + 0 770 64594 81 0 1 40 74 75 98 1 0 35 7 0 47 6 9 81 1 2 58 13 19 25 12 13 7 1 0 30 1 3 28 5 0 31 1 0 14 5 4 69 chain 43038 chr15 102531392 + 40680285 40681093 MER9a1 513 - 0 513 65370 225 1 5 99 300 0 164 0 1 19 chain 22553 chr15 102531392 + 40740174 40740454 AluSc 308 + 8 293 117794 39 1 7 203 2 1 35 chain 22778 chr15 102531392 + 40783176 40783450 AluSp 311 - 25 300 116686 176 1 2 97 chain 4321 chr15 102531392 + 40821787 40821841 U6 107 + 18 76 202942 19 0 1 6 0 3 29 chain 68760 chr15 102531392 + 40851994 40853362 L1PB3 3668 + 2555 3614 48916 110 1 0 49 1 0 6 0 14 48 297 0 84 0 1 22 0 3 96 2 0 10 0 1 54 9 1 70 10 13 140 0 1 13 1 0 98 2 3 6 0 7 70 23 7 15 9 7 24 3 1 19 2 0 18 24 19 10 7 4 15 chain 2755 chr15 102531392 + 40859103 40859146 MER3 215 + 144 193 229393 23 1 7 19 chain 6192 chr15 102531392 + 40873854 40874226 LTR12 884 - 14 608 183643 47 224 446 33 24 8 23 9 25 12 chain 3481 chr15 102531392 + 40875164 40875253 MER51A 677 + 176 235 215647 14 36 6 39 chain 25353 chr15 102531392 + 40875974 40876274 AluYc3 301 - 8 301 102937 47 1 0 134 7 1 111 chain 40445 chr15 102531392 + 40882795 40883343 HERV1_LTRa 508 - 0 508 68670 18 1 0 20 4 0 368 37 7 7 4 0 41 6 5 42 chain 4521 chr15 102531392 + 40884775 40884954 Charlie4a 502 - 295 487 200550 43 110 123 26 chain 7894 chr15 102531392 + 40886022 40886104 tRNA-Ser-AGY 82 - 0 82 171696 82 chain 27414 chr15 102531392 + 40895290 40895620 L1PA6 6164 - 2 332 94924 8 2 0 96 0 3 79 2 1 143 chain 23009 chr15 102531392 + 40900683 40900959 AluSp 311 + 25 298 115579 6 3 0 267 chain 17501 chr15 102531392 + 40926036 40926272 Tigger3b 1229 + 293 531 134265 18 8 11 9 1 0 200 chain 86320 chr15 102531392 + 40936149 40937167 LTR5A 1029 - 0 1029 41034 248 0 10 624 1 0 126 0 2 19 chain 22400 chr15 102531392 + 40950460 40950744 AluSg4 309 + 15 299 118483 116 1 0 72 9 9 37 0 1 49 chain 151973 chr15 102531392 + 40962860 40967390 L1MA3 4352 - 996 4307 24339 74 2 0 74 9 79 151 2 0 5 4 6 20 1 2 381 312 7 45 5 0 68 6 7 18 491 7 49 13 9 38 5 4 15 0 1 29 6 5 112 1444 965 75 1 0 26 1 0 98 0 5 105 1 0 8 1 0 95 2 0 90 17 1 94 19 17 134 12 14 180 0 3 19 5 14 30 5 0 22 1 0 110 chain 7588 chr15 102531392 + 40968206 40968294 L1MA3 4352 - 3882 3970 173622 88 chain 118048 chr15 102531392 + 40968294 40969690 LTR12C 1709 - 0 1709 31785 167 0 102 99 2 1 10 9 10 92 0 4 41 0 207 133 0 1 5 1 0 837 chain 731 chr15 102531392 + 40974187 40974259 L1M1 2793 - 1542 1614 90160 72 chain 172951 chr15 102531392 + 40974272 40976457 SVA_D 2077 + 12 2077 21714 165 0 4 377 0 40 125 0 3 35 3 0 146 12 48 75 1 0 6 35 10 6 1 0 129 147 0 203 29 4 13 4 0 654 0 3 19 chain 2811 chr15 102531392 + 40975217 40975252 SVA_D 2077 + 1137 1172 62532 35 chain 10281 chr15 102531392 + 40975388 40975516 SVA_D 2077 + 1308 1436 62532 76 22 22 30 chain 1639 chr15 102531392 + 40975738 40975767 SVA_D 2077 + 1130 1159 74149 29 chain 5694 chr15 102531392 + 40976458 40977019 L1M1 2793 - 1615 2132 90160 64 1 3 108 9 8 80 32 29 47 1 0 8 2 0 19 69 47 20 2 0 5 2 0 12 47 34 33 chain 81576 chr15 102531392 + 40978275 40979249 MER11C 1089 - 16 1089 42940 164 2 1 330 10 11 246 0 4 171 0 91 29 0 4 22 chain 58088 chr15 102531392 + 40980235 40982285 HERVK11-int 2540 - 306 1327 53932 94 0 1 30 3 4 75 13 12 14 1185 190 83 17 12 424 1 0 4 26 9 28 12 1 25 1 0 15 chain 18066 chr15 102531392 + 40981442 40981649 HERVK11-int 2540 + 1797 2003 131734 38 1 0 168 chain 22286 chr15 102531392 + 40991363 40991620 AluSp 311 - 34 291 118966 257 chain 6976 chr15 102531392 + 40993002 40993110 MER2 342 + 207 315 177629 35 3 0 5 1 4 64 chain 23453 chr15 102531392 + 41007283 41007576 AluSg7 307 + 10 300 113366 121 0 1 157 2 0 5 2 0 6 chain 22017 chr15 102531392 + 41009269 41009557 AluSp 311 + 11 298 120154 13 0 5 91 1 0 172 5 0 6 chain 4318 chr15 102531392 + 41012938 41012986 L1MB7 1623 + 139 187 202987 48 chain 3906 chr15 102531392 + 41014076 41014258 L1MB3 1562 + 1140 1287 208758 30 122 87 30 chain 28889 chr15 102531392 + 41017077 41017387 AluYb9 318 - 1 309 89495 8 2 0 300 chain 20852 chr15 102531392 + 41025168 41025412 AluSp 311 + 35 282 124452 56 0 3 188 chain 3521 chr15 102531392 + 41042218 41042259 Tigger3c 601 + 61 102 215053 41 chain 20604 chr15 102531392 + 41070514 41070748 AluSg7 307 - 72 307 125282 103 0 1 131 chain 25952 chr15 102531392 + 41091135 41091447 AluY 311 + 0 307 100195 133 1 0 6 8 4 164 chain 5091 chr15 102531392 + 41102496 41102563 MADE1 96 + 11 94 194166 38 0 16 29 chain 5203 chr15 102531392 + 41103436 41103519 MER3 215 - 144 215 192990 34 12 0 37 chain 25938 chr15 102531392 + 41112065 41112352 AluSp 311 - 13 300 100258 287 chain 23602 chr15 102531392 + 41129183 41129476 AluSp 311 + 15 304 112573 171 0 3 106 7 0 9 chain 35708 chr15 102531392 + 41133387 41133853 L1PA16 3655 - 76 547 75260 17 0 1 140 6 7 123 2 0 86 0 4 5 0 1 87 chain 5439 chr15 102531392 + 41137677 41137740 7SK 245 - 181 244 190614 63 chain 23324 chr15 102531392 + 41142280 41142567 AluSp 311 - 22 310 114065 59 1 0 12 0 1 167 5 6 43 chain 24092 chr15 102531392 + 41167638 41167952 AluY 311 + 0 311 109782 59 5 0 68 1 2 93 0 1 88 chain 28886 chr15 102531392 + 41170288 41170602 AluYb8 318 - 8 318 89507 178 4 0 132 chain 115624 chr15 102531392 + 41253632 41255097 LTR12C 1709 + 0 1709 32579 577 2 1 74 0 2 87 0 237 133 1 0 5 3 1 107 0 4 116 56 53 43 0 9 48 1 0 212 chain 3575 chr15 102531392 + 41265576 41265614 MLT2B3 573 + 0 38 214067 38 chain 3198 chr15 102531392 + 41303792 41303827 MER50 708 - 154 189 220958 35 chain 12752 chr15 102531392 + 41363446 41363591 L1PA5 6144 - 1 146 149245 145 chain 4853 chr15 102531392 + 41392941 41393006 L1MB3 1562 - 7 71 196744 32 1 0 32 chain 4274 chr15 102531392 + 41400315 41400392 L1MC3 1789 - 1264 1350 203556 35 14 23 28 chain 21905 chr15 102531392 + 41409699 41409982 AluSq2 311 + 17 303 120603 29 12 13 74 0 1 31 0 1 137 chain 7117 chr15 102531392 + 41410912 41411003 MER2 342 + 152 245 176630 75 0 2 16 chain 23654 chr15 102531392 + 41411022 41411297 AluY 311 + 17 290 112286 106 2 0 167 chain 24012 chr15 102531392 + 41422320 41422613 AluSx4 309 + 4 296 110261 119 1 0 173 chain 38166 chr15 102531392 + 41423493 41424004 LTR7B 505 + 0 495 71891 208 17 15 9 2 0 6 24 12 245 chain 60152 chr15 102531392 + 41427647 41428439 HERVH-int 3825 + 3024 3825 52749 219 16 17 194 0 2 39 1 3 225 1 5 97 chain 16405 chr15 102531392 + 41429633 41429810 LTR7B 505 + 0 177 137191 177 chain 5650 chr15 102531392 + 41432743 41432845 L1PB1 5432 - 29 124 188563 12 1 0 21 1 0 24 2 0 9 6 5 5 2 0 19 chain 7581 chr15 102531392 + 41433826 41433935 LTR9B 643 + 453 562 173660 17 2 1 54 1 2 35 chain 8229 chr15 102531392 + 41435273 41435381 MER51B 395 - 0 120 169787 86 1 13 21 chain 10957 chr15 102531392 + 41437716 41437857 MER57-int 2662 - 912 1049 156375 71 5 1 65 chain 19296 chr15 102531392 + 41438517 41438805 AluSp 311 + 10 293 129253 10 1 0 91 2 1 20 14 10 32 5 6 113 chain 16848 chr15 102531392 + 41444308 41444555 LTR12C 1709 + 774 997 135990 63 1 0 75 0 2 67 25 0 16 chain 23068 chr15 102531392 + 41447021 41447309 AluSc 308 - 12 304 115309 19 1 5 268 chain 26211 chr15 102531392 + 41455656 41455963 AluYf5 307 + 0 301 99164 11 4 0 253 2 0 37 chain 5536 chr15 102531392 + 41466674 41466760 MER41B 635 - 113 203 189711 53 8 12 25 chain 10133 chr15 102531392 + 41504172 41504335 L1MB8 1703 + 941 1106 159930 44 24 26 95 chain 18852 chr15 102531392 + 41506163 41506385 AluYk4 311 + 80 306 130510 187 0 4 35 chain 22702 chr15 102531392 + 41544368 41544664 AluSg7 307 - 5 307 117065 58 5 10 97 5 6 131 chain 27323 chr15 102531392 + 41574883 41575303 LTR7B 505 - 10 505 95197 37 18 17 37 1 0 15 0 1 23 1 0 54 1 89 27 34 11 49 0 1 16 0 10 18 0 1 89 chain 146561 chr15 102531392 + 41612454 41614115 SVA_D 2077 + 4 2056 25079 16 0 9 295 6 1 446 1 0 137 1 0 8 0 36 82 14 367 655 chain 31218 chr15 102531392 + 41615542 41617310 Tigger1 2417 - 865 2240 82125 68 5 339 60 1 5 20 815 255 25 0 2 117 3 35 26 344 82 115 97 152 42 4 3 13 1 4 12 chain 22511 chr15 102531392 + 41637654 41637947 AluSp 311 - 10 303 117979 7 5 0 12 0 4 175 1 2 93 chain 37233 chr15 102531392 + 41642302 41642898 LTR61 567 - 0 567 73194 49 1 0 41 1 2 29 0 1 91 9 14 67 9 0 49 3 0 30 9 0 6 5 0 73 1 2 35 5 0 7 17 16 38 4 0 17 chain 3462 chr15 102531392 + 41644078 41644128 MLT1C 463 - 412 463 215954 24 1 2 25 chain 24627 chr15 102531392 + 41653308 41653601 AluSp 311 + 0 292 106845 4 1 0 288 chain 5484 chr15 102531392 + 41660283 41660353 L1M2c 2366 - 2296 2364 190176 31 2 0 37 chain 20939 chr15 102531392 + 41670711 41670985 AluSp 311 + 10 299 124151 54 17 32 203 chain 134522 chr15 102531392 + 41674159 41676252 SVA_F 1814 + 335 1814 27107 225 0 1 266 274 0 28 354 0 32 0 1 59 0 15 49 1 0 166 1 0 10 1 0 627 chain 13571 chr15 102531392 + 41674719 41674924 SVA_F 1814 + 847 1067 75812 8 1 0 25 0 2 10 1 0 56 14 29 90 chain 21097 chr15 102531392 + 41674953 41675306 SVA_F 1814 + 855 1096 75132 25 0 1 17 2 1 49 0 15 83 127 0 50 chain 8143 chr15 102531392 + 41675129 41675252 SVA_F 1814 + 1222 1295 75812 52 50 0 21 chain 3647 chr15 102531392 + 41675181 41675218 SVA_F 1814 + 907 944 202750 37 chain 23480 chr15 102531392 + 41677544 41677829 AluY 311 + 2 292 113216 48 1 3 137 0 3 99 chain 28535 chr15 102531392 + 41691770 41692079 AluYa5 310 + 0 307 91025 123 2 0 184 chain 25446 chr15 102531392 + 41701231 41701541 AluSp 311 - 0 311 102474 135 1 2 174 chain 22303 chr15 102531392 + 41710733 41711004 AluSp 311 + 0 304 118901 53 0 7 135 1 2 29 0 25 53 chain 22960 chr15 102531392 + 41756069 41756336 AluSc5 308 - 30 297 115806 267 chain 26913 chr15 102531392 + 41762845 41763135 AluYa5 310 - 0 290 96583 290 chain 21700 chr15 102531392 + 41826067 41826333 AluSq2 311 + 30 297 121393 103 0 1 163 chain 23615 chr15 102531392 + 41868039 41868323 AluSp 311 + 9 303 112496 38 0 10 246 chain 34645 chr15 102531392 + 41878817 41879597 MER41A 554 + 60 532 76699 88 316 0 145 0 1 174 27 34 30 chain 167671 chr15 102531392 + 41879705 41882743 HERVIP10F-int 4088 + 428 3315 22318 6 1 0 11 1 0 11 3 2 16 56 45 18 1 0 31 1 0 33 46 40 14 1 0 7 0 1 7 1 0 10 1 0 23 7 5 8 1 0 45 1 0 4 4 2 33 1 0 7 1 0 59 1 0 3 1 0 28 2 1 10 1 0 20 1 0 8 1 0 5 14 6 7 1 0 13 57 49 39 2 0 11 1 0 4 5 4 13 21 16 24 7 4 23 5 4 8 1 0 43 1 0 131 11 7 11 1 0 8 17 12 14 1 0 12 7 5 23 1 0 6 31 42 45 8 6 18 1 0 62 1 0 32 25 21 421 1 0 65 1 0 84 1 0 72 1 0 17 2 1 134 1 0 397 0 1 129 39 36 45 165 129 7 1 0 15 17 8 14 27 23 11 2 1 10 3 0 7 19 11 13 chain 29607 chr15 102531392 + 41884937 41885716 LTR10F 562 + 6 528 86194 137 1 29 18 58 5 14 1 32 20 8 29 101 296 15 99 3 0 23 chain 5767 chr15 102531392 + 41907429 41907497 U3 216 + 0 68 187458 68 chain 21967 chr15 102531392 + 41915661 41915942 AluSp 311 + 1 299 120362 163 15 32 103 chain 3002 chr15 102531392 + 41963438 41963470 MER2B 336 + 81 113 224996 32 chain 17844 chr15 102531392 + 41992546 41992793 L1PA8 5853 - 93 347 133257 19 2 1 37 4 16 8 1 0 71 2 0 44 1 0 58 chain 28882 chr15 102531392 + 42017749 42018058 AluYa5 310 + 0 307 89531 97 2 0 210 chain 3831 chr15 102531392 + 42025111 42025154 MER41A 554 + 398 441 209920 43 chain 8482 chr15 102531392 + 42037406 42037498 SVA_E 1901 + 1809 1901 168399 92 chain 14836 chr15 102531392 + 42049488 42049681 MER2 342 + 82 274 141819 30 1 0 162 chain 23687 chr15 102531392 + 42064545 42064847 AluSc5 308 + 0 306 112108 84 0 1 149 0 2 37 5 6 27 chain 23032 chr15 102531392 + 42075940 42076218 AluY 311 + 15 294 115481 117 6 7 155 chain 19370 chr15 102531392 + 42084035 42084265 AluSp 311 + 64 294 129026 230 chain 6800 chr15 102531392 + 42094980 42095105 Tigger3b 1229 - 606 745 178956 12 0 4 13 8 25 60 9 2 23 chain 24905 chr15 102531392 + 42096046 42096337 AluSp 311 - 20 311 105311 291 chain 7659 chr15 102531392 + 42144138 42144227 5S 121 - 32 121 173166 89 chain 23872 chr15 102531392 + 42170994 42171279 AluYa5 310 + 11 293 111073 120 0 1 118 0 1 35 5 0 7 chain 59496 chr15 102531392 + 42254839 42255507 SVA_B 1603 + 898 1603 53110 28 5 1 8 0 41 627 chain 24937 chr15 102531392 + 42261466 42261754 AluSp 311 + 4 294 105126 271 0 2 17 chain 19199 chr15 102531392 + 42269467 42269762 L1MB2 1706 + 1379 1656 129529 48 7 0 146 1 0 4 13 5 16 1 0 13 1 0 45 chain 46101 chr15 102531392 + 42317430 42317996 LTR19B 566 - 10 566 61943 29 12 14 217 14 0 110 0 2 184 chain 31330 chr15 102531392 + 42330415 42330850 MER1A 529 - 0 488 81931 14 1 2 46 11 23 310 14 54 39 chain 22716 chr15 102531392 + 42336725 42336984 L1PA4 6152 + 5884 6143 117007 259 chain 11246 chr15 102531392 + 42383030 42383210 MER65D 500 + 201 382 155236 37 0 1 43 0 3 12 0 1 32 28 24 28 chain 89222 chr15 102531392 + 42383348 42384351 LTR13 1007 + 0 1007 39920 304 1 0 149 0 1 41 0 4 508 chain 3102 chr15 102531392 + 42411682 42411718 LTR16A1 462 - 0 36 222903 36 chain 28444 chr15 102531392 + 42431186 42431621 LTR22A 463 - 18 463 91404 88 16 20 61 4 8 13 1 0 10 0 1 9 14 15 116 8 9 95 chain 27872 chr15 102531392 + 42449281 42449603 L1PA6 6164 - 10 331 93446 137 1 0 184 chain 168752 chr15 102531392 + 42487626 42489529 L1PA5 6144 + 4239 6139 22193 293 0 1 743 0 4 107 6 0 504 1 0 80 2 1 167 chain 7589 chr15 102531392 + 42518519 42518691 Tigger1 2417 + 2208 2332 173620 30 11 13 72 50 0 9 chain 510209 chr15 102531392 + 42538501 42544578 L1PA6 6164 - 2 6164 6144 10 0 3 248 4 6 497 1 0 79 1 5 146 22 27 491 0 1 277 0 4 672 1 0 454 0 4 441 9 18 193 0 4 181 0 4 443 1 0 92 1 6 29 10 36 69 1 0 276 1 0 490 6 0 9 0 6 117 0 17 297 2 1 54 0 1 28 0 1 174 1 0 9 0 1 210 0 1 30 chain 11519 chr15 102531392 + 42558025 42558343 L1PREC2 3366 - 291 590 154224 12 1 0 4 1 0 11 2 0 38 6 4 20 0 3 9 40 23 20 1 0 9 2 0 16 10 5 13 32 42 40 1 0 30 chain 71776 chr15 102531392 + 42590862 42591721 L1PA8A 6298 - 1557 2420 47534 54 7 11 232 2 0 133 1 0 182 0 1 121 0 2 127 chain 100335 chr15 102531392 + 42591721 42592935 L1PA8A 6298 + 4747 5969 36681 274 8 0 408 6 13 46 0 3 79 0 2 174 0 4 219 chain 408841 chr15 102531392 + 42593260 42598224 L1PA7 6471 + 0 6393 9838 91 10 9 242 1 12 49 2 0 398 0 2 432 0 2 119 0 1 111 1 0 501 3 0 25 12 16 25 1 0 585 10 12 520 1 0 190 1 1393 93 0 2 354 0 1 8 0 4 405 1 5 7 0 3 81 0 5 191 0 2 94 0 3 400 chain 77971 chr15 102531392 + 42608385 42609336 LTR13A 966 - 0 966 44530 200 1 0 65 0 1 48 10 6 90 1 19 185 0 1 144 0 1 121 1 0 85 chain 118111 chr15 102531392 + 42626940 42628954 L1PREC2 3366 + 1279 3215 31770 20 28 19 65 12 87 293 0 2 441 3 0 97 5 7 431 17 0 11 2 0 44 15 14 6 0 2 32 1 0 4 3 0 10 32 24 11 12 7 15 3 1 29 4 1 11 24 10 33 10 8 5 0 1 30 2 0 9 1 0 4 1 0 8 211 125 19 chain 25923 chr15 102531392 + 42642220 42642516 AluSp 311 - 4 300 100326 296 chain 23607 chr15 102531392 + 42661137 42661582 LTR19A 502 - 0 502 112542 13 2 0 22 10 14 14 11 9 64 10 11 102 5 79 17 1 0 4 11 0 78 5 0 15 27 26 34 chain 7832 chr15 102531392 + 42719789 42719882 U6 107 - 1 94 172108 93 chain 25084 chr15 102531392 + 42752790 42753074 AluSp 311 + 14 298 104386 284 chain 5017 chr15 102531392 + 42777405 42777468 MER20B 722 - 517 580 194960 63 chain 12731 chr15 102531392 + 42778775 42778984 MER6 865 + 650 861 149327 124 33 32 33 5 8 14 chain 3452 chr15 102531392 + 42780011 42780050 L1MB3 1562 - 141 180 216167 39 chain 25204 chr15 102531392 + 42784606 42784897 AluSc 308 + 11 302 103713 291 chain 6064 chr15 102531392 + 42827540 42827627 Tigger1 2417 - 1786 1877 184713 69 6 10 12 chain 6142 chr15 102531392 + 42830550 42830618 MER41B 635 - 86 154 184063 68 chain 22945 chr15 102531392 + 42849240 42849508 AluY 311 + 10 277 115881 113 1 0 154 chain 4724 chr15 102531392 + 42857811 42857871 MER5A1 166 + 97 157 198236 60 chain 2893 chr15 102531392 + 42865516 42865547 Tigger2 2703 + 849 880 227166 31 chain 21625 chr15 102531392 + 42879786 42880052 AluSp 311 - 34 301 121675 60 4 5 202 chain 12684 chr15 102531392 + 42882791 42883162 MSTB 430 - 24 412 149508 71 195 212 105 chain 68130 chr15 102531392 + 42893064 42893835 SVA_B 1603 - 0 768 49192 310 0 1 213 0 1 69 1 0 33 1 0 85 1 0 27 1 0 12 1 0 17 chain 5904 chr15 102531392 + 42911843 42911985 MER1A 529 - 348 478 186149 38 25 24 22 25 14 32 chain 103753 chr15 102531392 + 42921516 42924834 L1MA3 4352 - 1800 4308 35785 27 1 4 9 5 0 11 1 6 168 5 12 97 4 10 51 1 0 46 11 8 43 31 26 162 1642 884 113 1 0 6 90 21 75 2 0 151 0 2 38 2 0 88 0 3 8 3 5 46 1 4 121 15 19 63 0 4 46 13 8 12 3 0 4 0 1 36 0 4 66 chain 16876 chr15 102531392 + 42933577 42933783 L1PA5 6144 - 12 225 135900 144 0 7 62 chain 25425 chr15 102531392 + 42933791 42934100 AluSp 311 - 1 310 102572 207 1 0 36 0 1 65 chain 5774 chr15 102531392 + 42936260 42936355 Tigger1 2417 - 31 119 187407 21 0 4 16 14 3 44 chain 105307 chr15 102531392 + 42946615 42948272 L1PB1 5432 + 3450 4814 35425 270 0 5 304 307 0 50 1 0 438 5 14 97 0 1 66 0 1 12 1 0 106 chain 31490 chr15 102531392 + 42963508 42963988 LTR10D 510 - 24 510 81657 17 1 5 45 2 0 86 6 0 58 7 8 20 12 21 28 16 17 37 0 1 43 2 0 100 chain 3604 chr15 102531392 + 42967406 42967475 MIRb 242 + 98 176 213580 13 2 1 31 6 16 17 chain 5272 chr15 102531392 + 42995427 42995492 L1M1 2793 - 1362 1427 192296 65 chain 3498 chr15 102531392 + 43043592 43043647 L1MB3 1562 + 1498 1552 215376 22 4 3 29 chain 28033 chr15 102531392 + 43054051 43054401 THE1B 368 + 4 368 92878 40 0 15 107 8 6 26 0 2 93 1 0 75 chain 16685 chr15 102531392 + 43054401 43054628 L1MA5A 2387 + 1791 2033 136449 22 3 0 82 1 19 119 chain 529423 chr15 102531392 + 43056334 43062445 L1PA6 6164 + 0 6156 4252 465 1 0 474 0 25 72 9 1 716 4 3 569 12 0 813 0 21 141 0 1 27 0 1 1036 0 4 280 1 0 515 1 0 154 0 4 415 0 2 7 0 4 81 0 1 200 0 6 118 chain 33187 chr15 102531392 + 43094920 43095357 MLT2A1 477 + 0 477 78919 143 0 4 21 1 5 212 4 0 10 9 45 37 chain 18830 chr15 102531392 + 43095357 43095622 Tigger3a 397 - 83 397 130577 175 15 64 75 chain 14566 chr15 102531392 + 43098942 43099132 MER30 238 + 38 238 142689 69 4 17 75 3 0 39 chain 7727 chr15 102531392 + 43115936 43116038 MER30 238 + 124 229 172732 35 1 7 33 3 0 30 chain 27552 chr15 102531392 + 43131436 43131951 L1PA15 4387 - 21 514 94498 10 1 0 28 6 0 6 29 28 23 36 32 22 1 0 10 4 0 22 1 0 5 0 1 49 1 0 26 5 4 168 2 1 42 3 1 15 chain 6213 chr15 102531392 + 43146686 43146785 MER6B 211 + 111 211 183471 13 1 0 60 7 9 18 chain 28387 chr15 102531392 + 43176956 43177369 LTR7B 505 + 0 491 91636 108 0 10 33 3 101 28 29 0 82 1 0 36 0 1 42 14 13 37 chain 231409 chr15 102531392 + 43177429 43180714 HERVH-int 3825 + 45 3825 17235 12 30 34 65 0 1 8 0 5 68 0 1 29 0 1 64 2 1 117 22 0 7 21 45 18 23 230 4 0 1 24 2 0 7 3 8 342 54 57 29 15 0 201 1 0 6 9 0 105 18 19 48 0 1 85 0 27 30 2 1 204 0 35 15 0 2 43 31 50 178 11 12 5 1 0 547 2 0 202 0 1 80 8 218 487 chain 27824 chr15 102531392 + 43182157 43182536 LTR7B 505 + 0 488 93611 104 0 10 41 0 97 26 0 2 85 1 0 31 0 1 44 14 13 13 0 1 20 chain 36472 chr15 102531392 + 43199235 43199854 L1MA4 2864 + 2068 2686 74271 50 0 2 22 21 7 41 2 5 33 9 7 43 9 10 16 1 0 30 3 0 96 0 2 20 6 8 28 7 0 8 3 21 124 5 6 28 3 0 11 chain 5713 chr15 102531392 + 43223959 43224075 MLT1D 503 - 335 451 187985 33 29 30 39 1 0 14 chain 19872 chr15 102531392 + 43224382 43224748 THE1D 372 + 0 357 127588 37 20 12 23 13 14 11 7 8 5 1 0 56 22 19 6 0 4 30 4 1 131 chain 13894 chr15 102531392 + 43230360 43230545 MER6A 605 - 150 332 144939 153 3 0 29 chain 188610 chr15 102531392 + 43239569 43241637 L1PA3long 6157 + 4082 6157 20182 768 0 4 642 0 3 658 chain 26624 chr15 102531392 + 43256387 43256683 AluSp 311 + 2 298 97575 296 chain 88499 chr15 102531392 + 43260752 43261808 L1PA7 6471 - 35 1093 40185 49 3 0 145 0 4 536 0 2 79 2 1 242 chain 69761 chr15 102531392 + 43261808 43262609 L1PA7 6471 + 4571 5378 48457 155 0 5 610 0 1 36 chain 3225 chr15 102531392 + 43283004 43283039 MIR 256 + 37 72 220502 35 chain 136209 chr15 102531392 + 43296574 43298302 SVA_B 1603 + 6 1603 26796 14 5 31 18 14 1 126 1 0 396 1 2 258 88 0 69 4 0 41 4 0 14 1 0 14 48 0 19 1 0 158 0 2 434 chain 150269 chr15 102531392 + 43306051 43307851 SVA_D 2077 + 6 2071 24571 5 2 0 4 0 1 4 0 1 684 1 4 96 40 0 103 1 0 8 2 1 30 9 0 4 0 1 40 0 1 4 0 1 36 5 9 5 0 1 43 0 1 9 0 304 32 1 2 9 0 1 609 2 0 12 chain 14824 chr15 102531392 + 43313675 43313865 MER2 342 - 65 254 141864 168 1 0 21 chain 23776 chr15 102531392 + 43328023 43328286 L1PA2 6032 + 5765 6025 111618 254 3 0 6 chain 63038 chr15 102531392 + 43331487 43332190 L1PA5 6144 - 1611 2314 51431 703 chain 135952 chr15 102531392 + 43332201 43333800 L1PA5 6144 + 4537 6144 26843 220 1 0 257 0 1 127 0 5 146 1 0 4 19 23 115 1 0 565 30 31 113 chain 22840 chr15 102531392 + 43353579 43354137 L1PB1 5432 + 4972 5413 116395 25 1 0 33 2 1 46 0 6 20 81 4 8 13 0 23 1 0 9 17 12 8 2 0 52 1 0 17 2 1 44 1 0 11 8 5 11 9 0 19 8 5 14 2 0 13 0 8 7 9 0 16 2 1 13 1 0 9 chain 13773 chr15 102531392 + 43367635 43367794 L1PA2 6032 - 3 158 145354 11 4 0 144 chain 151255 chr15 102531392 + 43368200 43369857 SVA_E 1901 + 0 1896 24441 145 6 0 179 3 0 69 0 76 348 1 0 22 1 171 636 0 3 247 chain 21240 chr15 102531392 + 43376655 43376930 AluSg7 307 - 16 287 123056 6 6 0 133 0 3 7 3 0 10 0 1 30 0 1 80 chain 23345 chr15 102531392 + 43381087 43381372 AluSz 310 + 10 295 113956 285 chain 23500 chr15 102531392 + 43400443 43400720 AluSp 311 - 34 311 113127 277 chain 8413 chr15 102531392 + 43409860 43409980 AluSc 308 + 0 105 168771 37 15 0 68 chain 5097 chr15 102531392 + 43412774 43412836 MER8 282 - 217 281 194108 43 0 2 19 chain 11232 chr15 102531392 + 43413579 43413726 L1PA6 6164 - 2 150 155301 28 5 6 114 chain 6143 chr15 102531392 + 43417521 43417593 MER2B 336 - 264 336 184050 72 chain 8342 chr15 102531392 + 43418602 43418728 L1MB3 1562 + 1190 1316 169161 11 1 0 60 3 0 6 7 11 38 chain 77348 chr15 102531392 + 43420321 43421336 MER11A 1151 + 0 1146 44803 69 0 99 59 2 1 66 4 0 149 0 1 94 0 1 145 3 6 134 0 49 11 18 0 36 0 1 46 1 0 16 3 4 159 chain 13051 chr15 102531392 + 43428087 43428232 L1PA7 6471 - 10 155 148027 145 chain 15160 chr15 102531392 + 43445492 43445853 L1MB3 1562 - 7 328 140877 31 1 0 9 126 90 4 1 0 63 7 6 29 1 0 89 chain 12253 chr15 102531392 + 43451737 43451918 L1MA2 4263 - 149 323 151193 9 1 0 36 1 0 11 7 0 71 0 4 17 1 0 8 1 0 18 chain 139117 chr15 102531392 + 43458755 43460315 SVA_D 2077 - 1 2019 26276 196 0 19 232 0 1 239 0 1 48 0 437 142 3 0 33 0 3 667 chain 124571 chr15 102531392 + 43467898 43469402 L1P1 4361 + 2 1497 29516 572 1 0 118 7 0 32 0 1 309 1 0 20 1 0 443 chain 70887 chr15 102531392 + 43469408 43470200 L1PA3long 6157 + 5356 6152 47969 471 0 3 176 3 4 142 chain 28134 chr15 102531392 + 43489969 43490321 THE1A 353 + 0 353 92526 109 2 1 120 0 1 115 0 1 6 chain 126260 chr15 102531392 + 43490321 43491884 THE1A-int 1579 + 0 1579 29014 116 1 3 149 0 3 626 7 8 277 4 0 33 6 19 106 0 1 238 chain 5445 chr15 102531392 + 43516635 43516700 MER41B 635 + 481 547 190572 27 0 1 38 chain 94230 chr15 102531392 + 43518017 43519311 LTR12C 1709 - 0 1709 38284 84 5 4 390 14 7 15 24 0 91 0 407 206 4 41 67 0 1 98 0 1 33 0 1 179 35 35 49 chain 28844 chr15 102531392 + 43523738 43524039 AluYa5 310 - 9 310 89693 301 chain 4269 chr15 102531392 + 43529665 43529735 MER53 195 + 0 74 203634 32 9 13 29 chain 8169 chr15 102531392 + 43539881 43539977 HY3 101 + 4 100 170121 96 chain 55726 chr15 102531392 + 43549779 43550427 L1PA5 6144 + 5486 6134 55286 4 0 1 507 1 0 136 chain 205732 chr15 102531392 + 43581284 43583587 L1PA4 6152 - 23 2328 18806 237 1 0 1531 1 3 419 0 1 114 chain 11030 chr15 102531392 + 43638597 43638763 MER20 218 - 34 209 156093 11 0 3 12 8 10 58 11 15 66 chain 24629 chr15 102531392 + 43648736 43649027 AluY 311 + 9 301 106830 123 1 2 167 chain 29313 chr15 102531392 + 43660441 43660752 AluYa5 310 + 0 310 87485 132 1 0 178 chain 19602 chr15 102531392 + 43681886 43682286 THE1B 368 - 0 360 128379 126 1 0 11 1 0 5 135 96 20 1 2 100 chain 34302 chr15 102531392 + 43685646 43686025 L1PA4 6152 - 1 380 77204 379 chain 23294 chr15 102531392 + 43718021 43718282 AluYk4 311 + 40 301 114235 261 chain 21915 chr15 102531392 + 43732478 43732734 AluY 311 + 51 304 120563 82 3 0 171 chain 3730 chr15 102531392 + 43736799 43736842 MIR 256 + 106 149 211458 43 chain 9513 chr15 102531392 + 43737100 43737229 MER85 139 - 0 139 163007 29 4 14 96 chain 56391 chr15 102531392 + 43743386 43744012 L1PA3long 6157 - 0 628 54909 5 0 2 621 chain 28889 chr15 102531392 + 43745110 43745416 AluYk12 309 + 0 306 89497 306 chain 9837 chr15 102531392 + 43757195 43757350 L1MB8 1703 + 1429 1583 161405 6 2 0 76 11 10 5 0 2 55 chain 133120 chr15 102531392 + 43765048 43766641 LTR12C 1709 - 0 1709 27402 291 0 1 189 0 4 6 0 1 99 4 2 4 1 0 174 0 1 100 1 0 10 0 119 156 1 0 60 5 6 82 4 0 103 2 0 301 chain 22626 chr15 102531392 + 43778302 43778582 AluSp 311 + 10 291 117448 240 1 2 39 chain 14446 chr15 102531392 + 43789790 43790068 L1MB3 1562 + 1305 1551 143060 47 1 0 67 58 28 77 10 9 18 chain 16822 chr15 102531392 + 43831172 43831412 AluSp 311 + 46 297 136056 88 1 0 79 25 39 26 2 0 19 chain 13681 chr15 102531392 + 43835461 43835615 L1PA4 6152 + 5989 6143 145664 154 chain 6482 chr15 102531392 + 43838136 43838206 MER41B 635 + 479 549 181380 70 chain 27062 chr15 102531392 + 43843804 43844099 AluYa5 310 - 15 309 96075 163 1 0 131 chain 543467 chr15 102531392 + 43942173 43948186 L1PA3long 6157 + 17 6144 2271 135 0 1 623 0 128 844 0 1 641 0 3 18 26 7 3726 chain 10444 chr15 102531392 + 44033568 44033713 MER1B 344 + 92 253 158518 85 11 27 49 chain 23400 chr15 102531392 + 44037667 44037938 AluY 311 + 2 274 113641 130 0 1 141 chain 23301 chr15 102531392 + 44050160 44050439 AluSp 311 + 0 286 114189 47 1 7 161 0 1 70 chain 22081 chr15 102531392 + 44060947 44061235 AluSq2 311 + 8 297 119885 48 9 11 67 1 0 163 chain 7586 chr15 102531392 + 44071990 44072135 Charlie4a 502 + 61 208 173634 75 35 37 35 chain 4664 chr15 102531392 + 44108769 44108843 MER119 576 + 426 491 198920 54 9 0 11 chain 22100 chr15 102531392 + 44139625 44139895 AluSg7 307 - 14 284 119784 19 0 1 147 1 0 103 chain 24568 chr15 102531392 + 44141743 44142031 AluSg7 307 - 16 307 107156 164 0 1 105 0 2 19 chain 8890 chr15 102531392 + 44156093 44156203 HY1 111 - 1 111 166182 110 chain 21611 chr15 102531392 + 44189936 44190291 THE1D 372 + 0 372 121732 100 0 1 6 0 1 52 57 66 12 4 10 124 chain 20576 chr15 102531392 + 44230191 44230449 AluYk4 311 + 8 301 125373 40 0 36 161 7 6 50 chain 280367 chr15 102531392 + 44253136 44256265 L1PA4 6152 + 3023 6152 14620 148 2 1 1587 0 1 4 1 0 1053 0 1 334 chain 19012 chr15 102531392 + 44259965 44260208 L1PA8 5853 - 0 243 130082 43 0 4 46 1 0 19 2 1 51 1 0 10 1 0 69 chain 27223 chr15 102531392 + 44280048 44280390 MER1A 529 - 130 470 95516 36 0 1 38 3 0 265 chain 7662 chr15 102531392 + 44282465 44282582 Tigger1 2417 + 2299 2416 173153 48 1 0 22 8 9 38 chain 3202 chr15 102531392 + 44284876 44284910 LTR8 732 - 111 145 220899 34 chain 21507 chr15 102531392 + 44285414 44285679 AluSc 308 - 34 297 122117 143 2 0 120 chain 37693 chr15 102531392 + 44294607 44295071 LTR2 463 - 0 463 72563 24 1 0 28 1 0 29 1 2 380 chain 26519 chr15 102531392 + 44299835 44300140 AluSp 311 - 4 310 97976 165 0 1 140 chain 27997 chr15 102531392 + 44324159 44324626 L1PA14 3548 + 3026 3465 93007 84 2 0 5 5 3 13 2 0 6 1 0 16 6 5 61 1 0 49 0 1 63 1 0 11 5 1 33 7 5 5 1 0 11 1 0 17 1 0 12 4 0 28 6 0 10 chain 98980 chr15 102531392 + 44329189 44330715 L1PA7 6471 - 2 1227 37029 11 0 2 136 1 0 323 320 2 53 0 1 88 0 5 229 1 6 7 0 4 247 1 2 109 chain 508491 chr15 102531392 + 44330755 44337117 L1PA7 6471 + 1 6468 6279 200 11 10 118 11 181 239 0 15 241 1 25 6 24 0 20 0 7 5 8 1 402 0 1 264 1 2 31 0 8 101 0 2 752 32 0 177 1 0 64 0 1 82 82 1 540 1 0 316 0 4 440 1 2 415 0 4 943 0 4 351 8 15 140 0 1 211 0 1 112 1 2 10 chain 6004 chr15 102531392 + 44350419 44350520 L1MB8 1703 + 1488 1585 185206 31 19 15 51 chain 24098 chr15 102531392 + 44368042 44368300 L1PA3long 6157 - 678 936 109755 258 chain 60835 chr15 102531392 + 44368300 44368978 L1PA3long 6157 + 5476 6157 52413 666 0 3 12 chain 25048 chr15 102531392 + 44385125 44385419 AluSc 308 - 6 300 104553 294 chain 9301 chr15 102531392 + 44401854 44402375 L1MC1 2226 - 28 448 164053 14 1 0 29 69 55 17 49 38 11 1 3 39 230 153 61 chain 20222 chr15 102531392 + 44414825 44415108 AluY 311 + 25 299 126462 27 17 1 78 3 0 44 0 13 102 3 0 9 chain 9485 chr15 102531392 + 44425313 44425440 AluSc5 308 + 182 297 163140 108 12 0 7 chain 8762 chr15 102531392 + 44430990 44431117 L1MB8 1703 + 1457 1586 166856 47 4 5 4 0 1 72 chain 12595 chr15 102531392 + 44439605 44439774 L1PA10 4194 - 33 198 149861 11 1 0 34 3 0 120 chain 14784 chr15 102531392 + 44467050 44467268 L1PA8 5853 + 5638 5853 141989 27 0 1 16 1 0 11 9 8 39 2 1 19 2 1 92 chain 3716 chr15 102531392 + 44467731 44468028 L1ME1 1623 + 1235 1522 211688 43 234 224 20 chain 130906 chr15 102531392 + 44518213 44519735 L1PA6 6164 + 4639 6162 27881 725 1 0 4 0 1 38 0 3 595 1 0 32 0 1 118 2 0 6 chain 85610 chr15 102531392 + 44520792 44521811 LTR5A 1029 + 0 1029 41302 135 4 17 356 4 0 92 12 13 416 chain 25505 chr15 102531392 + 44530015 44530357 THE1B 368 - 11 368 102201 138 1 0 27 3 1 123 6 24 44 chain 558557 chr15 102531392 + 44544232 44550247 L1PA2 6032 + 12 6030 447 1265 0 3 4750 chain 26549 chr15 102531392 + 44560883 44561194 AluYb8 318 + 10 308 97845 108 4 0 8 2 0 121 7 0 61 chain 12921 chr15 102531392 + 44596373 44597207 Tigger1 2417 - 627 836 148559 55 624 0 63 1 0 47 6 0 8 16 22 14 chain 18931 chr15 102531392 + 44644862 44645131 AluSq2 311 + 35 311 130287 14 3 9 75 23 24 154 chain 20446 chr15 102531392 + 44646433 44646657 L1PA4 6152 + 5927 6151 125766 224 chain 415324 chr15 102531392 + 44651818 44656401 L1PA3long 6157 + 1560 6156 9656 994 6 6 639 0 3 27 0 4 29 0 1 480 0 3 547 0 2 1284 0 1 560 1 0 16 chain 8478 chr15 102531392 + 44657741 44658029 L1MC1 2226 + 1931 2182 168411 49 107 83 20 5 0 15 5 8 14 18 9 6 1 0 17 1 0 30 chain 25977 chr15 102531392 + 44662087 44662470 MLT2A1 477 - 92 477 100109 61 1 0 151 9 13 17 1 2 94 21 19 28 chain 24537 chr15 102531392 + 44668162 44668458 AluSp 311 + 10 308 107327 132 1 4 32 1 0 130 chain 25474 chr15 102531392 + 44695360 44695659 AluSp 311 - 12 311 102337 299 chain 24284 chr15 102531392 + 44701193 44701492 AluY 311 + 0 293 108742 109 8 1 22 0 1 160 chain 3668 chr15 102531392 + 44731676 44731866 Tigger4a 237 - 0 237 212440 20 54 52 19 64 113 33 chain 270312 chr15 102531392 + 44745627 44749054 L1PA5 6144 - 3 3115 15173 146 1 0 552 1 0 8 3 0 134 0 4 814 0 3 135 0 4 605 321 0 82 0 1 328 3 0 78 0 4 73 2 1 5 1 0 135 chain 29306 chr15 102531392 + 44748037 44748347 AluYf4 310 - 0 310 87541 310 chain 25954 chr15 102531392 + 44751443 44751732 AluYf4 310 + 0 289 100191 289 chain 23262 chr15 102531392 + 44758860 44759159 AluYc 301 + 0 294 114371 122 17 12 160 chain 3879 chr15 102531392 + 44761965 44762012 MER41B 635 - 86 133 209183 47 chain 23231 chr15 102531392 + 44780727 44781046 AluSp 311 + 0 311 114537 18 1 0 91 2 3 20 4 0 21 6 2 156 chain 18756 chr15 102531392 + 44786885 44787137 AluSx1 309 + 55 291 130811 78 1 0 151 15 0 7 chain 23548 chr15 102531392 + 44832133 44832433 AluSg7 307 - 5 306 112866 145 20 20 5 0 1 130 chain 23215 chr15 102531392 + 44836938 44837214 AluSc 308 + 17 293 114620 276 chain 10202 chr15 102531392 + 44892067 44892207 L1PA8 5853 - 9 151 159611 31 0 4 49 1 0 19 2 1 38 chain 22635 chr15 102531392 + 44893070 44893366 AluSp 311 + 1 298 117399 78 0 1 58 4 7 5 3 0 148 chain 17966 chr15 102531392 + 44928660 44928879 AluY 311 + 83 302 132945 40 1 0 9 0 1 169 chain 144904 chr15 102531392 + 44936406 44938438 L1PA15 4387 + 2289 4265 25341 82 0 1 49 26 41 389 3 0 105 9 13 89 0 2 104 5 4 81 57 10 183 0 1 213 1 0 63 0 5 88 2 0 57 19 0 21 5 3 34 10 9 168 1 0 26 1 0 55 1 0 22 17 12 46 chain 17814 chr15 102531392 + 44938482 44938793 THE1D 372 - 15 372 133359 17 1 0 11 3 21 32 0 1 51 50 64 28 0 4 15 1 0 5 0 1 25 0 10 72 chain 2839 chr15 102531392 + 44946316 44946375 Tigger2b_Pri 1066 + 127 185 228095 15 16 15 28 chain 543996 chr15 102531392 + 44974992 44982060 L1PA7 6471 + 0 6461 2210 224 0 2 174 1 3 432 4 0 582 1 2 52 0 1 287 0 1 45 1 0 720 311 0 110 1 3 911 3 7 279 0 1 183 2 0 588 0 2 62 0 4 202 0 9 17 304 0 113 23 10 178 1 0 416 2 1 199 0 1 640 chain 21717 chr15 102531392 + 44980190 44980460 AluY 311 + 27 299 121326 78 4 5 22 0 1 166 chain 6058 chr15 102531392 + 44989540 44989614 HY3 101 - 9 87 184755 48 0 4 26 chain 197080 chr15 102531392 + 44991835 44996191 L1MA3 4352 - 1251 4278 19421 303 0 1 82 0 1 84 0 1 46 1 0 64 0 1 6 378 104 82 3 2 11 1 0 167 13 12 35 0 2 32 19 18 177 43 0 55 3 0 5 1 14 21 0 1 7 0 2 38 0 1 53 723 1 20 1 0 26 25 57 39 2 1 179 2 1 5 4 0 9 17 20 5 0 2 175 6 1 22 1 0 26 5 4 92 8 9 10 0 2 93 1 0 11 0 8 82 2 0 23 307 0 182 5 6 49 0 1 136 0 1 69 25 0 124 5 8 8 8 0 11 6 5 71 1 0 5 chain 16000 chr15 102531392 + 45009357 45009595 Tigger3a 397 - 31 374 138349 13 0 44 151 26 87 48 chain 473226 chr15 102531392 + 45031438 45036664 L1PA3long 6157 + 0 6157 7942 810 0 1 501 0 916 2125 0 4 509 1 2 442 0 4 43 0 3 22 1 2 90 0 1 682 chain 229249 chr15 102531392 + 45062095 45066819 L1PB1 5432 - 8 3048 17343 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 20 13 16 1 0 42 2 1 16 2 1 19 1 0 34 17 11 9 1 0 9 1 0 20 4 1 12 1 2 5 1 0 166 991 0 126 6 4 88 1 0 93 3 0 305 0 1 191 314 0 294 0 4 20 0 1 81 4 5 532 0 1 74 5 4 128 2 0 96 0 1 40 354 8 279 2 3 38 18 15 116 chain 72449 chr15 102531392 + 45062627 45063598 MER11A 1151 + 4 1120 47287 53 0 98 73 0 5 56 8 5 38 0 2 54 0 1 54 0 1 89 3 5 21 1 0 9 0 1 104 6 9 8 1 0 53 1 5 70 7 41 226 7 6 29 chain 69234 chr15 102531392 + 45076406 45077380 LTR13 1007 - 20 1007 48709 12 2 0 55 0 4 217 1 15 21 32 19 15 4 3 126 0 13 35 0 1 51 18 19 115 0 2 196 6 0 68 chain 21419 chr15 102531392 + 45086698 45086977 AluY 311 + 30 303 122446 118 5 8 135 9 0 12 chain 22208 chr15 102531392 + 45093183 45093470 L1PA4 6152 + 5865 6152 119312 27 1 0 107 7 0 7 3 6 129 0 5 6 chain 2989 chr15 102531392 + 45107339 45107385 MLT2B4 540 + 492 532 225266 6 6 0 34 chain 8702 chr15 102531392 + 45135809 45135920 HY1 111 + 0 111 167180 111 chain 27434 chr15 102531392 + 45145013 45145367 L1PA8 5853 - 0 348 94865 37 0 1 55 1 0 16 1 0 51 1 0 13 1 0 72 2 0 44 1 0 59 chain 81152 chr15 102531392 + 45149760 45150645 L1PA3long 6157 + 5258 6142 43112 744 1 0 140 chain 67417 chr15 102531392 + 45156084 45157971 HERV9-int 5642 - 192 2083 9350 131 0 3 86 1 0 150 0 1 6 1 0 66 0 1 345 0 1 1101 chain 499508 chr15 102531392 + 45157989 45164497 L1PA6 6164 + 0 6160 6862 64 0 1 320 0 13 12 0 1 46 17 16 67 0 1 647 0 3 290 6 7 19 1 0 221 0 1 135 23 0 173 336 0 227 0 2 923 0 2 88 7 8 51 0 2 596 1 2 28 0 3 4 1 0 169 3 4 23 29 18 185 0 2 305 1 0 5 10 3 237 1 2 217 0 4 175 0 1 273 4 1 500 0 1 54 6 0 8 chain 127402 chr15 102531392 + 45164499 45168065 HERV9-int 5642 - 2083 5630 9350 630 10 5 348 0 1 26 8 13 357 1 0 4 0 1 152 7 8 845 1 0 62 2 1 222 1 5 19 5 0 14 2 0 73 5 6 51 6 0 19 25 0 91 9 10 80 0 1 188 0 1 31 4 5 11 0 1 99 2 1 48 26 27 72 0 9 10 chain 10903 chr15 102531392 + 45176816 45176979 U1 164 + 3 164 156576 71 20 18 72 chain 505835 chr15 102531392 + 45182763 45188870 L1PA6 6164 - 17 6164 6476 659 1 0 121 0 5 46 5 9 122 8 5 254 1 2 483 1 0 295 3 4 378 10 19 100 0 4 118 1 0 251 2 5 69 0 1 654 0 3 210 1 0 180 0 1 106 1 2 86 0 7 748 0 1 292 4 8 103 0 3 81 0 1 144 1 0 151 1 0 5 0 1 156 9 8 46 1 0 4 1 2 194 chain 4662 chr15 102531392 + 45241660 45241718 MSTB2 466 + 0 58 198937 58 chain 8214 chr15 102531392 + 45255027 45255126 U6 107 + 0 102 169866 44 0 3 55 chain 23003 chr15 102531392 + 45281782 45282069 AluY 311 + 3 288 115601 123 4 0 150 0 2 10 chain 412621 chr15 102531392 + 45283341 45288526 L1PA6 6164 + 1030 6160 9729 254 0 1 209 0 1 483 1 0 347 14 0 215 0 3 352 0 3 108 0 1 176 1 2 81 0 4 40 277 19 200 2 1 720 1 0 666 1 2 546 0 1 138 0 203 25 3 4 325 chain 24241 chr15 102531392 + 45285622 45285898 L1PA6 6164 - 727 1002 107031 129 1 0 146 chain 12365 chr15 102531392 + 45295060 45295223 U1 164 - 0 161 150772 87 5 3 71 chain 27955 chr15 102531392 + 45302497 45302952 LTR12F 595 + 15 571 93149 57 0 143 31 3 2 10 44 2 132 1 0 9 26 27 11 0 1 131 chain 107709 chr15 102531392 + 45303005 45306896 HERV9-int 5642 + 12 3548 13764 391 0 1 293 24 0 19 6 0 130 2 0 188 3 0 7 0 3 20 6 3 5 0 3 4 0 1 5 1 0 22 2 0 393 4 0 86 0 3 194 322 0 474 0 1 335 0 3 825 22 25 90 6 0 12 chain 514592 chr15 102531392 + 45306919 45313417 L1PA6 6164 - 8 6164 5716 330 1 0 286 0 1 285 4 33 318 333 0 223 0 1 238 1 0 207 0 6 177 0 4 74 0 1 777 1 0 4 0 1 303 6 10 485 0 2 65 10 0 176 71 0 1141 0 7 66 1 5 517 1 2 13 0 13 320 0 1 64 chain 5592 chr15 102531392 + 45313424 45313626 HERV9-int 5642 + 3548 3750 13764 202 chain 94979 chr15 102531392 + 45326850 45328464 LTR12E 1234 + 0 1234 38106 31 8 0 420 1 0 6 2 3 231 41 0 149 11 22 221 101 0 26 20 13 48 234 0 64 chain 4129 chr15 102531392 + 45328018 45328061 LTR12E 1234 + 1028 1071 205528 43 chain 3691 chr15 102531392 + 45328252 45328294 LTR12E 1234 + 1028 1070 212068 42 chain 3647 chr15 102531392 + 45328294 45328332 LTR12E 1234 + 1071 1109 212850 38 chain 26542 chr15 102531392 + 45329810 45330164 L1PA8 5853 + 5505 5853 97871 59 1 0 44 2 0 71 1 0 9 1 0 52 2 1 15 6 5 54 0 1 37 chain 14119 chr15 102531392 + 45335019 45335254 MLT2C2 476 - 136 467 144144 27 0 67 17 0 1 49 1 0 57 38 67 46 chain 146021 chr15 102531392 + 45345844 45347437 L1PA3long 6157 - 0 1593 25168 1593 chain 122503 chr15 102531392 + 45347437 45348781 L1PA3long 6157 + 3241 4592 30218 20 0 2 521 0 1 572 0 4 231 chain 28335 chr15 102531392 + 45391211 45391507 AluYk12 309 - 13 309 91819 296 chain 23934 chr15 102531392 + 45434645 45434928 AluSp 311 + 4 289 110719 272 0 2 11 chain 25189 chr15 102531392 + 45458341 45458632 AluSp 311 - 18 310 103801 78 0 2 21 1 0 191 chain 6496 chr15 102531392 + 45490803 45490873 tRNA-His-CAY_ 70 - 0 70 181296 70 chain 6496 chr15 102531392 + 45492610 45492680 tRNA-His-CAY_ 70 - 0 70 181295 70 chain 6496 chr15 102531392 + 45493350 45493420 tRNA-His-CAY_ 70 + 0 70 181291 70 chain 5634 chr15 102531392 + 45500029 45500113 LTR51 675 - 10 95 188720 37 4 5 43 chain 22150 chr15 102531392 + 45501199 45501467 AluY 311 + 20 298 119587 15 1 13 244 2 0 6 chain 57001 chr15 102531392 + 45518684 45519439 MER4E 760 - 7 760 54527 51 6 7 61 0 1 60 0 1 36 7 6 166 13 7 101 0 1 237 0 1 17 chain 49904 chr15 102531392 + 45526675 45527261 LTR14C 587 - 0 587 59088 18 0 1 568 chain 6209 chr15 102531392 + 45527765 45528150 HERVK14C-int 762 - 5 199 183514 21 130 18 21 1 0 10 1 0 8 119 45 13 4 3 50 2 0 5 chain 50392 chr15 102531392 + 45534684 45535271 LTR14C 587 - 0 587 58721 80 0 1 69 3 2 435 chain 66880 chr15 102531392 + 45560644 45561375 L1PA3long 6157 + 5426 6157 49692 731 chain 37165 chr15 102531392 + 45568281 45568688 L1PA3long 6157 + 5750 6157 73288 407 chain 17861 chr15 102531392 + 45575167 45575371 L1PA5 6144 + 5928 6132 133211 204 chain 59836 chr15 102531392 + 45576609 45577679 MER4E 760 + 0 760 52911 27 0 1 107 0 2 15 0 2 232 0 13 19 2 0 105 0 1 46 328 0 40 1 0 141 0 2 7 chain 5746 chr15 102531392 + 45583601 45583673 MER53 195 - 98 170 187675 72 chain 144712 chr15 102531392 + 45584609 45586194 SVA_D 2077 - 1 2077 25368 653 0 49 30 0 436 885 1 7 16 chain 26595 chr15 102531392 + 45588826 45589180 THE1A 353 + 0 353 97681 13 2 0 4 0 1 30 0 1 41 7 6 257 chain 126652 chr15 102531392 + 45589180 45591411 THE1A-int 1579 + 0 1574 28903 108 0 1 15 1 0 367 311 3 16 20 0 10 0 7 471 0 2 255 338 0 319 chain 1392 chr15 102531392 + 45604069 45604214 MSTA 426 + 31 200 147176 35 0 1 4 1 0 28 25 49 52 chain 81424 chr15 102531392 + 45604214 45605248 L1PA8 5853 + 4809 5853 43003 167 0 19 14 0 3 197 1 0 12 0 1 342 1 0 43 9 2 69 4 3 11 1 0 47 4 3 18 3 2 91 chain 883 chr15 102531392 + 45605360 45605452 MSTA 426 + 264 376 147176 32 2 22 58 chain 103425 chr15 102531392 + 45606107 45607382 LTR12C 1709 + 0 1709 35893 566 12 7 77 0 278 148 0 47 101 2 6 57 1 2 107 0 102 71 1 9 47 1 0 84 chain 91541 chr15 102531392 + 45610458 45611521 L1PA6 6164 + 5105 6162 39116 415 1 0 632 5 0 10 chain 11006 chr15 102531392 + 45612130 45612268 LTR8A 794 + 0 142 156184 44 0 4 94 chain 36035 chr15 102531392 + 45615677 45616180 PRIMA4_LTR 623 + 0 611 74855 166 9 32 61 7 10 93 11 91 97 3 5 56 chain 23608 chr15 102531392 + 45620089 45620424 MER4B 649 + 0 372 112533 30 1 0 62 29 30 35 0 42 165 5 0 8 chain 24281 chr15 102531392 + 45632096 45632391 AluSq2 311 + 7 302 108769 295 chain 14283 chr15 102531392 + 45639559 45639717 L1PA5 6144 + 5986 6144 143613 158 chain 7722 chr15 102531392 + 45646989 45647083 U6 107 - 13 107 172767 94 chain 7206 chr15 102531392 + 45650381 45650467 MER50 708 - 107 192 176026 53 1 0 32 chain 5233 chr15 102531392 + 45650665 45650730 MER96B 391 + 221 287 192702 52 0 1 13 chain 3645 chr15 102531392 + 45663468 45663524 Tigger13a 716 + 583 642 212889 45 1 0 4 0 4 6 chain 3684 chr15 102531392 + 45697257 45697308 L1MA4 2864 - 68 117 212167 29 2 0 20 chain 4563 chr15 102531392 + 45726821 45726887 L1MB7 1623 - 194 258 200071 7 1 0 52 1 0 5 chain 8924 chr15 102531392 + 45729862 45730002 MER30 238 - 0 180 166008 80 24 64 36 chain 45257 chr15 102531392 + 45733781 45734366 LTR66 600 - 2 600 62761 119 8 10 60 0 6 74 7 9 50 0 1 88 0 1 72 0 1 107 chain 21901 chr15 102531392 + 45735358 45735648 AluJr 308 - 8 297 120614 166 1 0 4 6 7 16 1 0 96 chain 5157 chr15 102531392 + 45738661 45738722 U7 62 - 1 62 193472 61 chain 74728 chr15 102531392 + 45744636 45745694 MER11C 1089 - 26 1089 46150 143 1 0 29 1 0 25 0 1 86 1 6 35 0 1 38 1 0 4 1 5 88 82 67 150 1 0 64 0 4 57 4 13 247 chain 4115 chr15 102531392 + 45753802 45753866 HAL1-2a_MD 234 + 93 228 205716 20 6 77 38 chain 5353 chr15 102531392 + 45758817 45758883 MSTA 426 + 358 424 191500 66 chain 54804 chr15 102531392 + 45764451 45765084 LTR6A 649 + 0 635 55837 44 1 2 301 1 0 89 0 2 197 chain 16065 chr15 102531392 + 45781804 45781977 L1PA4 6152 + 5978 6151 138164 173 chain 5263 chr15 102531392 + 45782077 45782235 MER58A 224 + 49 209 192386 36 81 83 41 chain 3343 chr15 102531392 + 45824010 45824046 MER4D0 881 - 77 113 218186 36 chain 43070 chr15 102531392 + 45824632 45825367 MER41A 554 - 20 554 65335 106 0 1 109 201 0 172 1 0 146 chain 25959 chr15 102531392 + 45835779 45836092 AluSp 311 - 0 310 100177 23 3 0 287 chain 22006 chr15 102531392 + 45843441 45843801 LTR7 482 - 6 482 120200 43 14 15 112 0 1 9 44 85 60 0 50 55 0 23 23 chain 8957 chr15 102531392 + 45875718 45875827 MER4D1 891 - 13 121 165845 57 1 0 51 chain 48440 chr15 102531392 + 45875840 45876462 MER41B 635 - 8 635 60156 64 1 2 52 0 1 12 0 1 368 0 1 82 1 2 42 chain 10052 chr15 102531392 + 45880182 45880347 MER105 203 + 32 203 160313 48 13 17 85 7 9 12 chain 8517 chr15 102531392 + 45884181 45884280 HY3 101 + 0 99 168206 99 chain 226074 chr15 102531392 + 45890100 45892540 L1PA2 6032 + 3581 6030 17527 208 0 2 85 0 3 1303 0 4 844 chain 5549 chr15 102531392 + 45893098 45893221 Tigger4b 360 - 181 341 189580 37 1 10 34 36 64 15 chain 12412 chr15 102531392 + 45893239 45893409 MER44A 345 - 81 267 150590 100 7 15 40 0 8 23 chain 21775 chr15 102531392 + 45914914 45915215 AluSp 311 + 1 307 121113 52 13 18 178 1 0 28 4 5 25 chain 191398 chr15 102531392 + 45915266 45917775 L1PA6 6164 + 3915 6162 19921 16 0 1 280 4 7 49 1 0 94 0 4 52 0 4 685 0 7 39 0 1 637 281 0 371 chain 22132 chr15 102531392 + 45922579 45922860 AluSg7 307 - 13 296 119660 81 7 8 73 0 1 120 chain 26332 chr15 102531392 + 45923150 45923504 THE1A 353 + 0 353 98686 106 15 14 233 chain 6691 chr15 102531392 + 45928899 45929002 Charlie4a 502 - 310 414 179758 31 11 12 61 chain 12680 chr15 102531392 + 45942847 45943047 LTR12C 1709 - 790 1058 149539 18 33 24 40 1 0 27 0 78 81 chain 8210 chr15 102531392 + 45993476 45993636 MER58A 224 + 44 207 169897 33 30 35 50 8 6 39 chain 45979 chr15 102531392 + 46000166 46000780 MER41B 635 - 0 633 62060 70 11 16 37 0 1 31 3 4 237 0 11 99 2 3 124 chain 448931 chr15 102531392 + 46044722 46050294 L1PA6 6164 - 8 5301 8792 104 0 5 215 0 1 62 5 0 472 0 4 470 0 1 381 1 0 80 0 1 664 2 0 445 7 11 22 9 10 18 0 1 79 0 2 782 0 1 135 0 2 249 311 0 457 0 12 59 0 1 78 6 7 42 1 3 14 0 1 402 chain 3509 chr15 102531392 + 46059350 46059396 MER58A 224 + 41 85 215225 38 2 0 6 chain 25158 chr15 102531392 + 46059596 46059877 L1PA3long 6157 + 5871 6153 103968 77 0 1 204 chain 29777 chr15 102531392 + 46067995 46068315 AluYb8 318 - 0 318 85556 192 2 0 126 chain 86136 chr15 102531392 + 46104628 46105835 L1M1 2793 + 914 2106 41105 89 27 26 65 0 2 83 1 0 59 4 0 13 4 0 21 11 1 25 0 1 197 0 1 55 0 1 5 1 0 426 1 4 46 2 0 72 chain 47310 chr15 102531392 + 46106562 46107195 L1PB1 5432 - 334 963 60959 292 15 9 171 1 2 23 1 2 130 chain 33373 chr15 102531392 + 46107201 46107598 LTR3 431 + 26 422 78612 236 1 0 160 chain 229760 chr15 102531392 + 46108696 46113017 L1PBa 3878 - 172 3364 17317 250 0 1 4 1 0 224 3 0 178 0 1 12 9 8 116 5 6 103 0 4 90 2 0 9 23 19 8 0 3 189 0 3 168 42 41 160 0 1 50 0 1 92 5 7 53 3 1 32 4 0 45 3 4 41 0 4 33 809 0 123 336 0 22 4 3 82 1 0 128 0 1 84 1 0 11 1 0 34 2 16 302 0 1 161 8 9 245 1 0 9 chain 65484 chr15 102531392 + 46110676 46111445 L1PA6 6164 - 3 772 50345 769 chain 22167 chr15 102531392 + 46117146 46117467 THE1B 368 - 31 368 119511 145 8 6 14 1 0 13 11 16 40 1 0 48 0 15 40 chain 13521 chr15 102531392 + 46132738 46132988 MER21C 908 - 70 315 146279 68 5 3 57 24 25 28 27 23 41 chain 23902 chr15 102531392 + 46137847 46138112 L1PA4 6152 - 0 265 110903 265 chain 23341 chr15 102531392 + 46138892 46139176 LTR12C 1709 + 1293 1709 113977 218 6 138 60 chain 4847 chr15 102531392 + 46148039 46148096 MSTB2 466 + 84 141 196811 57 chain 26105 chr15 102531392 + 46155596 46155929 L1PA8 5853 - 0 329 99600 112 3 2 129 2 0 46 1 0 40 chain 110466 chr15 102531392 + 46165180 46166743 THE1C-int 1605 - 5 1568 34085 306 1 10 12 21 24 67 19 21 306 1 2 148 1 2 48 79 14 43 0 30 115 0 7 27 0 1 19 1 0 63 0 6 8 0 2 144 0 4 134 chain 315947 chr15 102531392 + 46167146 46171631 L1PB1 5432 + 927 5404 12767 105 2 1 209 0 4 140 26 36 95 0 8 56 0 1 21 0 1 135 11 7 18 1 0 43 1 12 77 0 1 261 0 1 40 0 3 50 15 24 55 6 7 155 11 0 30 10 6 313 1 0 93 0 1 71 3 2 191 0 6 179 5 4 43 5 10 278 1 0 14 47 30 16 1 0 5 1 2 194 0 5 642 5 0 11 0 1 286 2 0 122 6 7 26 0 4 11 11 12 6 3 0 20 1 0 8 1 0 14 18 12 40 1 0 12 2 1 17 1 0 44 1 0 14 2 0 6 15 6 18 13 10 10 2 0 24 1 0 21 1 0 13 chain 88110 chr15 102531392 + 46177988 46179216 LTR12D 1347 + 0 1347 40329 202 25 20 26 0 1 48 8 44 195 74 25 133 0 41 250 0 97 116 3 1 148 chain 3949 chr15 102531392 + 46178492 46178539 LTR12D 1347 + 645 693 177055 14 0 1 33 chain 29215 chr15 102531392 + 46236789 46237098 AluYf4 310 + 0 309 87985 309 chain 8094 chr15 102531392 + 46238784 46238888 MER5A 189 + 10 114 170525 20 1 0 79 0 1 4 chain 62206 chr15 102531392 + 46245945 46246675 L1PA7 6471 - 4 734 51800 9 3 0 661 1 4 56 chain 6018 chr15 102531392 + 46277758 46277848 L1PA10 4194 + 4062 4150 185069 43 0 2 5 8 4 34 chain 11034 chr15 102531392 + 46290325 46290661 L1MA4A 3247 - 143 426 156078 123 161 115 25 8 2 13 1 0 5 chain 29096 chr15 102531392 + 46292148 46292480 L1PA4 6152 - 9 341 88569 332 chain 278768 chr15 102531392 + 46338657 46341744 L1PA3long 6157 + 3053 6146 14706 953 0 2 17 1 0 332 0 4 1110 0 1 674 chain 22648 chr15 102531392 + 46384492 46384802 AluSp 311 + 0 293 117332 55 18 4 69 2 0 71 0 4 84 5 0 6 chain 117147 chr15 102531392 + 46389636 46391015 SVA_B 1603 - 3 1599 32073 45 1 0 539 2 1 14 0 204 278 4 0 345 5 7 103 1 25 18 7 0 17 chain 547219 chr15 102531392 + 46396751 46402862 L1PA3long 6157 + 20 6157 1803 690 6 13 466 0 3 1130 0 4 940 0 4 734 0 3 724 15 0 573 0 4 416 0 11 88 0 1 278 0 4 51 chain 38100 chr15 102531392 + 46409780 46410311 MLT2A2 560 - 13 558 71985 32 0 2 5 2 0 95 3 14 260 28 26 80 0 5 26 chain 68745 chr15 102531392 + 46434360 46435180 L1PA6 6164 - 4 832 48926 201 0 2 99 0 1 301 0 1 75 0 1 69 0 3 75 chain 3076 chr15 102531392 + 46440048 46440089 L1MB7 1623 - 20 60 223384 6 1 0 34 chain 10967 chr15 102531392 + 46461786 46461931 LTR7B 505 - 64 248 156329 89 0 41 24 2 0 30 chain 268055 chr15 102531392 + 46485185 46489313 L1PA10 4194 - 188 4019 15289 14 5 6 37 0 4 239 1 2 6 1 0 36 9 13 225 12 5 18 273 0 651 0 1 74 5 9 267 13 17 74 8 11 51 15 23 204 0 4 128 18 15 23 0 1 1081 0 5 49 6 12 41 13 16 71 37 38 51 2 0 63 8 0 3 8 0 9 21 16 23 1 0 6 10 8 21 2 0 22 1 0 7 63 44 12 1 0 7 34 27 10 3 1 6 3 0 11 2 0 13 chain 66247 chr15 102531392 + 46506613 46507661 L1PB1 5432 + 4377 5422 49983 98 1 5 76 1 10 50 8 5 86 0 1 96 0 6 286 30 28 14 27 21 9 2 0 52 2 1 16 1 0 44 1 0 15 22 12 18 1 0 4 2 1 15 2 0 24 1 0 9 0 3 9 0 6 7 1 0 18 chain 26844 chr15 102531392 + 46515479 46515789 L1PA7 6471 - 4 314 96825 310 chain 9177 chr15 102531392 + 46525628 46525771 L1PA8 5853 - 11 151 164669 74 13 12 15 2 1 29 1 0 9 chain 36224 chr15 102531392 + 46550748 46553148 L1PA13 3608 - 546 2068 74594 74 1888 1002 23 0 6 22 0 2 393 chain 35355 chr15 102531392 + 46575599 46576079 MER75 514 - 0 485 75724 16 3 0 97 3 8 179 11 14 171 chain 12528 chr15 102531392 + 46589865 46590084 MER30 238 - 0 238 150126 74 11 1 21 1 0 18 4 17 5 2 0 14 1 0 42 4 22 5 0 2 17 chain 72287 chr15 102531392 + 46625174 46625989 L1P1 4361 - 174 989 47340 37 1 0 706 0 1 71 chain 52356 chr15 102531392 + 46625990 46626564 L1PA3long 6157 + 5583 6157 57394 574 chain 8175 chr15 102531392 + 46628590 46628730 L1PA17 2846 + 2548 2682 170099 36 20 16 32 1 0 18 1 0 32 chain 272557 chr15 102531392 + 46653926 46656921 L1PA3long 6157 - 0 2995 15045 849 0 1 2136 1 0 9 chain 51849 chr15 102531392 + 46660145 46660719 L1PA2 6032 - 0 578 57721 17 0 3 242 0 1 315 chain 87647 chr15 102531392 + 46660719 46661689 L1P1 4361 + 2592 3562 40514 970 chain 283526 chr15 102531392 + 46668224 46671463 L1PA5 6144 - 14 3259 14431 835 0 4 655 0 1 692 0 1 69 1 2 9 0 1 29 6 2 327 0 1 332 0 1 284 chain 108821 chr15 102531392 + 46671463 46672712 L1PA5 6144 + 1604 2873 34459 99 1 0 137 0 5 750 0 1 163 0 15 99 chain 36445 chr15 102531392 + 46692359 46692835 L1PA7 6471 + 5976 6468 74302 25 0 2 127 2 1 110 0 2 38 8 18 43 0 3 123 chain 519443 chr15 102531392 + 46717127 46723257 L1PA5 6144 + 0 6144 5219 346 26 27 498 0 7 291 9 0 70 1 0 365 8 4 692 0 1 261 0 4 32 1 0 354 0 1 209 1 2 37 0 1 43 0 4 612 0 1 9 1 2 360 0 1 38 0 1 69 0 2 1571 4 7 222 chain 17438 chr15 102531392 + 46726957 46727231 Tigger1 2417 + 44 330 134416 15 8 0 88 0 2 109 13 30 18 2 4 5 1 0 15 chain 24630 chr15 102531392 + 46729728 46730013 L1PA5 6144 - 2 287 106829 285 chain 76713 chr15 102531392 + 46738889 46739730 L1PA3long 6157 - 1 842 45114 841 chain 76620 chr15 102531392 + 46750002 46750929 L1PA7 6471 + 5540 6470 45154 74 0 3 253 0 1 260 1 0 339 chain 38137 chr15 102531392 + 46755978 46756587 MER51A 677 + 0 661 71938 110 26 31 29 40 22 101 0 72 167 10 11 44 8 0 74 chain 139494 chr15 102531392 + 46765910 46767590 L1PA7 6471 + 4783 6470 26221 79 0 2 120 0 1 636 1 0 552 7 10 115 9 11 161 chain 102671 chr15 102531392 + 46783412 46787694 L1PB2 3958 + 213 3838 36085 14 5 2 135 1 0 39 40 23 160 15 19 94 0 1 149 5 0 7 8 19 130 1 0 166 16 17 5 0 1 111 2621 1960 44 2 0 54 12 8 5 3 0 63 2 0 12 2 0 65 23 22 77 0 28 38 1 0 31 0 6 7 7 4 26 2 0 21 1 0 62 chain 27606 chr15 102531392 + 46791633 46791941 AluYg6 310 + 0 302 94333 92 0 1 25 7 0 184 chain 22072 chr15 102531392 + 46804198 46804565 THE1D 372 + 0 372 119916 47 9 0 10 1 3 128 33 38 12 0 6 85 20 21 22 chain 118156 chr15 102531392 + 46823217 46824922 L1PB1 5432 + 3675 5427 31748 45 0 9 575 0 1 72 2 3 190 60 133 148 3 1 251 10 9 19 17 15 10 2 0 3 2 0 9 2 0 52 2 1 10 6 5 41 34 20 30 7 4 15 2 0 18 7 6 21 1 0 13 1 0 18 2 0 5 chain 539277 chr15 102531392 + 46828438 46834580 L1PA4 6152 - 0 6151 2936 5 2 0 3134 0 1 442 0 4 41 0 1 260 2 3 1015 0 1 173 0 1 237 17 0 258 1 0 66 6 25 306 1 2 176 chain 23381 chr15 102531392 + 46847020 46847383 THE1C 375 - 0 362 113755 261 44 46 14 10 7 34 chain 5947 chr15 102531392 + 46878203 46878277 L1PA7 6471 + 6383 6461 185709 23 0 4 51 chain 45186 chr15 102531392 + 46886474 46887255 L1PA14 3548 - 83 868 62838 10 6 0 41 4 3 15 1 0 3 1 0 15 4 2 33 4 0 13 1 0 73 0 6 26 9 8 51 0 4 23 11 8 10 15 11 79 0 20 6 2 0 5 2 0 26 0 5 16 23 18 148 0 4 75 3 2 18 1 0 8 chain 151908 chr15 102531392 + 46904850 46906511 L1PA3long 6157 - 0 1662 24350 1121 0 1 540 chain 96517 chr15 102531392 + 46906511 46907667 L1P1 4361 + 6 1154 37649 568 1 0 118 7 0 462 chain 3430 chr15 102531392 + 46928320 46928360 UCON12 82 - 10 50 216573 40 chain 25011 chr15 102531392 + 46963029 46963310 AluYf4 310 - 20 310 104734 167 0 9 114 chain 29190 chr15 102531392 + 46972347 46972753 LTR7 482 + 0 477 88101 44 33 71 105 1 2 36 0 32 187 chain 4326 chr15 102531392 + 46975263 46975313 MER50 708 + 0 50 202878 50 chain 83106 chr15 102531392 + 47033836 47036461 L1PA7 6471 + 923 3576 14425 213 0 1 76 0 4 198 0 1 442 1 0 302 0 5 466 2 1 100 0 1 39 0 1 313 0 1 5 1 0 4 0 4 372 0 9 68 9 13 14 chain 65457 chr15 102531392 + 47036467 47037200 L1HS 6032 - 4789 5523 50235 409 7 8 317 chain 424070 chr15 102531392 + 47037200 47041813 L1PA2 6032 + 1415 6029 9445 3017 0 1 1596 chain 30393 chr15 102531392 + 47041836 47042796 L1PA7 6471 + 3578 6466 14425 361 1 0 7 0 1 12 0 1914 168 0 2 121 0 4 140 0 8 150 chain 110688 chr15 102531392 + 47047653 47049247 THE1B-int 1605 - 11 1512 34036 137 2 0 35 54 0 18 65 0 175 0 1 75 2 1 474 8 11 211 28 53 310 chain 52177 chr15 102531392 + 47054588 47055614 PABL_B 668 - 2 668 57513 286 357 0 30 1 0 72 1 0 186 1 0 92 chain 2871 chr15 102531392 + 47055828 47055899 MER5A1 166 - 45 118 227518 19 25 27 27 chain 58582 chr15 102531392 + 47058010 47058760 MER4E 760 - 8 754 53654 136 2 0 163 0 1 4 1 0 86 2 0 115 20 19 210 0 1 11 chain 54274 chr15 102531392 + 47065846 47066604 MER4E 760 - 5 760 56179 17 0 2 87 1 0 4 0 1 30 1 0 79 22 9 160 11 9 110 18 28 9 0 1 209 chain 244777 chr15 102531392 + 47124435 47127132 L1PA3long 6157 + 3453 6157 16515 491 0 1 179 0 3 434 0 1 771 0 1 405 0 1 417 chain 90766 chr15 102531392 + 47175775 47176841 MER11C 1089 - 15 1089 39370 6 0 2 328 0 1 45 0 4 438 0 1 249 chain 16102 chr15 102531392 + 47177007 47177216 LTR66 600 + 0 214 138053 13 0 7 68 2 0 126 chain 19370 chr15 102531392 + 47177821 47178094 Tigger3a 397 + 41 366 129027 29 20 72 224 chain 212647 chr15 102531392 + 47198776 47201533 L1PA8A 6298 - 15 2762 18313 126 0 1 63 3 0 6 1 0 149 6 5 359 1 4 80 2 1 428 1 2 169 0 2 63 2 0 354 0 11 187 0 1 169 0 1 161 6 7 51 45 21 283 0 2 6 1 0 35 chain 23136 chr15 102531392 + 47216523 47216833 AluSp 311 + 2 304 114958 97 11 10 22 0 1 160 8 0 12 chain 7916 chr15 102531392 + 47224226 47224479 L1MC1 2226 - 1221 1479 171547 14 1 0 17 93 98 7 1 0 29 7 6 40 10 13 34 chain 3302 chr15 102531392 + 47240439 47240503 LTR12F 595 - 328 380 218946 19 17 5 28 chain 26785 chr15 102531392 + 47241717 47242010 AluYa5 310 + 15 306 97030 108 2 0 183 chain 3880 chr15 102531392 + 47249766 47249811 MADE1 96 - 50 96 209167 19 0 1 26 chain 26457 chr15 102531392 + 47268524 47269001 L1PB 1623 + 1147 1585 98216 155 7 6 44 3 0 94 1 0 7 8 7 24 1 0 4 3 0 14 4 0 13 1 0 8 51 29 23 2 0 10 chain 31659 chr15 102531392 + 47272686 47273089 MLT2A1 477 + 0 393 81390 169 4 1 111 2 1 103 6 0 8 chain 4455 chr15 102531392 + 47274147 47274224 MADE1 96 + 0 94 201289 24 5 21 26 1 2 21 chain 198311 chr15 102531392 + 47278219 47280781 HERVL-int 5654 + 3027 5654 19334 77 0 4 884 1 17 10 2 5 10 0 4 20 0 1 648 0 1 162 0 3 5 4 1 20 3 6 5 0 1 91 5 6 151 10 20 48 7 6 42 9 35 111 13 9 77 0 1 4 1 0 142 chain 453799 chr15 102531392 + 47283065 47289355 L1PA8A 6298 - 56 6264 8623 219 0 5 445 1 0 62 10 10 9 0 3 33 0 9 88 1 0 248 0 1 291 1 0 165 34 1 237 0 1 4 1 0 138 0 11 373 6 10 34 0 10 103 5 6 62 9 14 158 0 1 6 16 16 103 1 0 5 22 0 6 0 3 333 14 3 257 0 4 364 0 2 39 16 0 263 1 2 312 1 0 237 12 13 149 0 2 147 2 6 80 36 36 97 8 0 154 16 17 38 27 28 257 1 0 77 1 0 3 1 0 9 1 0 19 2 0 44 0 1 30 83 68 19 1 0 7 1 0 6 1 0 6 4 3 12 1 0 4 2 0 15 2 0 11 0 1 8 1 0 11 2 1 9 2 1 16 6 0 9 12 9 15 3 0 21 14 6 6 3 0 9 1 0 16 1 0 6 chain 115018 chr15 102531392 + 47290153 47291387 L1HS 6032 - 0 1233 32786 860 1 0 373 chain 37365 chr15 102531392 + 47291387 47291786 L1HS 6032 + 4449 4848 73009 399 chain 122909 chr15 102531392 + 47293787 47295168 L1PA4 6152 - 9 1390 30077 1381 chain 145502 chr15 102531392 + 47298071 47299915 L1PA8 5853 - 37 1893 25254 54 1 0 21 0 3 59 1 0 71 2 0 43 7 6 165 29 30 12 2 13 245 2 0 87 0 2 539 2 3 118 0 3 42 0 1 243 3 0 96 chain 35419 chr15 102531392 + 47300032 47300536 L1P3 4156 - 686 1194 75656 67 9 6 179 9 8 60 0 4 49 10 14 121 chain 20397 chr15 102531392 + 47344116 47344454 THE1B 368 - 0 362 125904 62 1 0 53 45 55 27 1 0 103 8 24 38 chain 8119 chr15 102531392 + 47356556 47356643 L1P1 4361 - 282 369 170382 87 chain 159132 chr15 102531392 + 47400644 47403028 L1PA8 5853 - 0 2106 23448 20 4 1 72 1 0 61 7 6 11 1 0 74 2 0 44 1 0 48 0 1 158 15 28 234 2 1 6 0 1 25 314 0 53 0 2 9 0 8 202 12 14 45 0 13 227 10 11 136 0 1 4 4 0 119 4 3 110 0 2 123 0 5 96 0 1 90 0 1 40 chain 43216 chr15 102531392 + 47411088 47411556 L1PA3long 6157 - 10 479 65153 34 0 1 434 chain 87713 chr15 102531392 + 47423917 47424938 SVA_D 2077 + 0 1208 40480 30 1 18 11 13 0 149 2 1 47 0 1 621 0 183 147 chain 103125 chr15 102531392 + 47425030 47426419 SVA_E 1901 + 669 1901 35965 49 1 2 13 0 39 18 211 14 8 1 0 5 1 0 110 4 0 39 6 13 116 1 0 806 chain 14842 chr15 102531392 + 47453243 47453425 THE1C-int 1605 - 164 346 141803 182 chain 549852 chr15 102531392 + 47457729 47463757 L1PA2 6032 + 0 6027 1466 255 2 1 71 0 1 570 1 0 110 0 1 5003 1 0 15 chain 29216 chr15 102531392 + 47466975 47467284 AluYa5 310 - 1 310 87981 309 chain 5514 chr15 102531392 + 47495745 47495815 LTR48 738 + 536 607 189903 64 0 1 6 chain 13224 chr15 102531392 + 47516219 47516367 L1PA2 6032 + 5884 6032 147372 148 chain 4554 chr15 102531392 + 47522113 47522235 MER53 195 + 40 166 200177 47 43 50 5 3 0 24 chain 33272 chr15 102531392 + 47531212 47531682 MER1A 529 + 67 524 78766 13 11 8 274 0 1 94 19 8 59 chain 4177 chr15 102531392 + 47534408 47534455 MADE1 96 - 4 51 204875 47 chain 10505 chr15 102531392 + 47564794 47565026 7SK 245 + 1 240 158224 81 100 107 51 chain 365760 chr15 102531392 + 47569826 47573853 L1PA3long 6157 - 15 4130 11215 1474 0 88 2553 chain 66127 chr15 102531392 + 47610467 47611186 L1PA3long 6157 - 1 720 50038 719 chain 48593 chr15 102531392 + 47635470 47636008 L1PA4 6152 - 16 554 60040 538 chain 33013 chr15 102531392 + 47636008 47636380 L1PA4 6152 + 5213 5592 79194 91 0 4 49 0 3 232 chain 23739 chr15 102531392 + 47649257 47649534 AluYf4 310 + 8 286 111841 197 1 2 79 chain 28130 chr15 102531392 + 47649671 47650021 MLT2A1 477 - 127 477 92541 146 0 1 23 0 1 8 3 0 124 0 1 46 chain 14705 chr15 102531392 + 47660677 47660829 AluYa5 310 - 21 173 142259 152 chain 34819 chr15 102531392 + 47688456 47688990 MLT2A2 560 - 0 539 76448 31 15 9 29 0 1 77 4 15 180 51 50 147 chain 9889 chr15 102531392 + 47821362 47821523 Tigger2 2703 - 244 413 161133 122 27 35 12 chain 2889 chr15 102531392 + 47860407 47860439 MADE1 96 - 64 96 227213 32 chain 21209 chr15 102531392 + 47867650 47867930 AluSc8 310 + 16 299 123183 100 12 15 168 chain 41333 chr15 102531392 + 47882265 47882729 L1PA6 6164 + 5693 6157 67492 464 chain 24904 chr15 102531392 + 47974367 47974655 AluYk4 311 - 15 303 105322 288 chain 8063 chr15 102531392 + 47975504 47975605 L1PB4 2604 - 104 205 170676 101 chain 28807 chr15 102531392 + 48003224 48003528 AluYa5 310 + 0 303 89858 132 1 0 171 chain 32100 chr15 102531392 + 48030248 48030646 L1PA8A 6298 - 7 405 80692 31 3 2 78 4 5 282 chain 36775 chr15 102531392 + 48072398 48072941 MER41C 542 + 0 542 73841 49 0 1 190 1 17 56 2 0 6 36 17 23 25 28 155 chain 9719 chr15 102531392 + 48119902 48120045 MER2 342 + 149 295 161986 88 0 2 35 8 9 12 chain 23893 chr15 102531392 + 48127537 48127908 THE1D 372 - 0 372 110942 138 19 4 8 0 23 8 10 6 20 0 2 31 0 4 71 10 1 56 chain 20343 chr15 102531392 + 48156407 48156754 THE1D 372 + 0 354 126089 162 75 84 34 2 0 74 chain 133409 chr15 102531392 + 48159605 48161242 L1PA7 6471 - 3 1645 27339 10 0 2 134 0 7 7 8 1 592 16 5 84 3 0 8 1 4 281 0 14 493 chain 25342 chr15 102531392 + 48180142 48180521 THE1D 372 - 0 372 103006 32 1 0 85 1 0 64 1 5 133 12 0 22 13 16 15 chain 59935 chr15 102531392 + 48184318 48185362 L1P3 4156 - 169 901 52856 539 315 0 78 5 6 23 0 7 32 6 0 12 0 1 34 chain 8648 chr15 102531392 + 48185362 48185487 L1P3 4156 + 4016 4139 166342 27 1 2 62 2 0 7 2 1 24 chain 32678 chr15 102531392 + 48186358 48186746 L1PA7 6471 + 6071 6467 79722 74 0 6 164 0 1 11 0 1 139 chain 117190 chr15 102531392 + 48194861 48196411 THE1B-int 1605 - 11 1605 32062 193 1 2 89 6 2 166 0 4 143 4 5 73 23 24 52 2 3 99 0 3 91 8 15 163 0 2 10 1 26 146 0 2 154 1 0 110 0 2 15 chain 3755 chr15 102531392 + 48199278 48199322 MADE1 96 + 2 46 211047 44 chain 10536 chr15 102531392 + 48205018 48205164 MER30 238 + 75 238 158111 31 3 23 61 3 0 48 chain 2652 chr15 102531392 + 48280678 48280707 MER5A 189 + 2 31 230994 29 chain 2857 chr15 102531392 + 48290761 48290796 MLT1I 406 - 1 37 227703 20 0 1 15 chain 24779 chr15 102531392 + 48312489 48312858 THE1D 372 + 0 372 106004 153 47 51 136 1 0 32 chain 37315 chr15 102531392 + 48314573 48315013 L1PA7 6471 - 3 441 73067 7 2 0 431 chain 35486 chr15 102531392 + 48316364 48316861 MER75 514 + 0 513 75576 31 0 3 61 3 0 5 15 24 127 3 6 60 1 0 103 0 4 66 0 1 22 chain 60348 chr15 102531392 + 48335846 48336631 L1PA8 5853 + 5075 5853 52655 489 1 0 45 3 1 69 1 0 8 19 18 35 2 1 19 1 0 93 chain 156420 chr15 102531392 + 48346721 48348570 L1PA7 6471 + 4609 6459 23808 90 0 2 920 1 0 792 29 29 17 chain 22525 chr15 102531392 + 48375157 48375438 AluSp 311 + 10 294 117911 150 1 4 130 chain 33181 chr15 102531392 + 48410650 48411015 L1PA5 6144 - 6 371 78934 365 chain 5929 chr15 102531392 + 48454005 48454099 MADE1 96 + 2 96 185897 36 0 1 8 9 8 41 chain 25179 chr15 102531392 + 48461796 48462091 AluSg7 307 - 11 307 103855 248 0 1 47 chain 25415 chr15 102531392 + 48537662 48538037 L1PA16 3655 - 99 472 102615 145 1 2 112 19 17 67 10 9 21 chain 21336 chr15 102531392 + 48550583 48550903 THE1B-int 1605 - 1339 1603 122735 110 54 0 83 3 1 70 chain 13494 chr15 102531392 + 48550960 48551158 THE1B 368 - 62 368 146374 56 12 119 16 7 8 107 chain 29759 chr15 102531392 + 48594535 48594847 AluYb8 318 + 0 312 85608 312 chain 30123 chr15 102531392 + 48613873 48614189 AluYb8 318 - 2 318 84412 316 chain 12228 chr15 102531392 + 48642092 48642342 L1PB1 5432 + 5191 5413 151302 29 2 1 16 1 0 43 1 0 16 3 0 7 14 5 15 21 13 10 2 0 24 1 0 21 1 0 13 1 0 9 chain 23341 chr15 102531392 + 48645966 48646230 AluSc5 308 + 15 279 113976 264 chain 24373 chr15 102531392 + 48659976 48660267 AluSg7 307 - 5 297 108241 170 0 1 121 chain 123240 chr15 102531392 + 48668309 48669901 THE1B-int 1605 + 8 1598 29964 269 31 5 9 3 4 121 10 35 78 2 1 905 0 1 56 2 0 106 chain 23781 chr15 102531392 + 48669911 48670261 THE1B 368 + 3 368 111592 12 9 7 15 0 5 31 15 29 70 2 1 123 1 0 72 chain 11631 chr15 102531392 + 48679359 48679499 MER47A 366 + 93 233 153774 140 chain 56891 chr15 102531392 + 48689106 48689723 L1PA3long 6157 + 5538 6157 54606 365 0 1 245 0 1 7 chain 7839 chr15 102531392 + 48703842 48703994 MER5A 189 + 34 189 172081 44 3 4 32 18 21 10 7 6 38 chain 25199 chr15 102531392 + 48795216 48795511 AluSg 306 + 2 298 103747 185 0 1 110 chain 8848 chr15 102531392 + 48870705 48870802 L1PA2 6032 - 496 593 166382 97 chain 37598 chr15 102531392 + 48870802 48871216 L1PA2 6032 + 5618 6032 72686 414 chain 8988 chr15 102531392 + 48880314 48880579 MER33 330 + 25 320 165670 18 5 20 17 105 111 63 1 2 38 1 9 17 chain 22266 chr15 102531392 + 48891007 48891344 THE1B 368 + 7 368 119050 37 6 21 12 0 7 28 2 0 17 9 13 24 8 6 27 0 2 167 chain 3439 chr15 102531392 + 48945190 48945227 MER58B 340 - 167 204 216426 37 chain 6835 chr15 102531392 + 48952490 48952582 L1PA16 3655 + 3496 3585 178693 82 3 0 7 chain 16212 chr15 102531392 + 48979998 48980223 L1MA3 4352 + 1377 1601 137712 11 1 2 92 2 0 46 1 0 59 0 1 13 chain 98341 chr15 102531392 + 49023608 49024852 L1PA8A 6298 + 5055 6288 37211 399 0 1 20 5 4 5 0 3 92 0 1 65 12 11 373 1 0 88 28 15 51 3 4 21 1 0 80 chain 15497 chr15 102531392 + 49037690 49037880 LTR7B 505 - 64 255 139910 76 1 0 83 1 3 29 chain 10355 chr15 102531392 + 49047709 49047847 L1PA8 5853 - 0 136 158880 92 2 1 16 1 0 27 chain 28613 chr15 102531392 + 49057836 49058148 AluYg6 310 - 0 310 90683 34 2 0 276 chain 14205 chr15 102531392 + 49099624 49099776 AluYb8 318 + 154 306 143864 152 chain 23932 chr15 102531392 + 49108670 49108979 AluY 311 + 0 294 110736 130 15 0 164 chain 6265 chr15 102531392 + 49111790 49111885 L1MD1 2063 - 418 509 183046 6 3 0 20 0 1 4 2 0 60 chain 42674 chr15 102531392 + 49112454 49113003 MLT2A2 560 - 0 560 65810 147 4 15 159 1 0 67 3 4 168 chain 192352 chr15 102531392 + 49166584 49169585 Charlie3 2679 + 17 2592 19826 17 1 0 4 5 8 452 0 3 77 0 1 316 4 5 309 0 62 10 0 1 4 1 0 329 0 3 156 1 0 52 3 0 38 6 10 114 0 2 108 522 3 11 0 14 397 12 17 52 chain 30119 chr15 102531392 + 49168705 49169105 MLT2A1 477 - 84 477 84427 8 6 0 108 7 6 67 0 1 23 0 1 9 4 1 122 0 1 46 chain 4776 chr15 102531392 + 49179560 49179621 MIR 256 + 88 148 197621 55 1 0 5 chain 8977 chr15 102531392 + 49185607 49185751 MER58A 224 - 81 224 165736 28 1 0 60 10 14 7 4 0 34 chain 405654 chr15 102531392 + 49199626 49205238 L1PB1 5432 - 8 5413 9919 4 1 0 16 1 0 13 1 0 21 1 0 8 62 49 17 3 0 16 1 0 43 1 0 16 2 1 50 3 1 11 16 11 13 9 8 12 1 0 11 93 0 51 1 0 5 4 12 67 57 0 152 1 4 194 8 4 470 0 3 401 3 7 15 0 1 79 2 0 89 10 3 401 0 1 46 1 0 256 2 0 6 4 0 216 14 19 83 0 1 19 3 0 10 8 0 272 12 11 265 0 2 235 0 1 81 1 2 168 13 7 43 18 0 6 1 0 381 0 12 136 9 10 248 4 1 407 1 3 117 41 32 29 chain 3734 chr15 102531392 + 49236234 49236289 L1MA9 1812 - 397 451 211398 28 1 0 26 chain 7499 chr15 102531392 + 49288110 49288219 HY1 111 - 0 111 174161 5 2 0 72 3 7 27 chain 474077 chr15 102531392 + 49293660 49299742 L1PA7 6471 - 2 5760 7908 10 4 0 145 0 2 382 0 3 111 6 8 102 14 17 71 0 4 214 1 0 63 7 6 269 1 4 380 0 12 1091 0 5 17 0 4 216 1 0 215 5 6 120 0 1 98 0 2 28 304 0 222 19 0 475 1 5 19 0 1 139 9 10 357 0 2 28 3 0 84 44 0 230 0 1 199 0 1 34 9 10 335 chain 10110 chr15 102531392 + 49339532 49339658 MER2 342 + 136 262 160041 126 chain 18389 chr15 102531392 + 49342932 49343294 THE1B 368 - 0 368 131822 112 76 79 54 31 33 77 0 1 12 chain 72289 chr15 102531392 + 49343309 49344170 THE1B-int 1605 - 16 880 47339 438 6 8 262 0 1 155 chain 17651 chr15 102531392 + 49346914 49347133 MER1A 529 - 1 221 133836 59 5 6 155 chain 9793 chr15 102531392 + 49359990 49360254 L1MB5 1630 - 12 270 161633 4 1 0 13 1 0 47 22 21 12 53 51 72 25 24 14 chain 470303 chr15 102531392 + 49360756 49367263 L1PA7 6471 + 5 6438 8023 192 15 14 118 18 188 11 16 43 133 22 32 18 1 3 8 2 0 28 33 110 11 0 3 5 0 1 123 0 21 432 0 2 393 0 3 217 16 4 514 0 1 111 0 3 36 0 1 277 2 1 530 6 10 214 0 1 17 3 4 166 4 0 235 0 10 8 10 11 970 97 8 116 310 5 113 1 4 136 2 1 18 4 3 665 0 1 130 chain 5436 chr15 102531392 + 49365684 49365743 L1PA7 6471 + 4466 4525 190645 59 chain 18986 chr15 102531392 + 49400558 49400784 AluSc8 310 + 58 287 130141 74 0 3 152 chain 8624 chr15 102531392 + 49427195 49427345 MER44A 345 - 96 257 167618 42 18 21 27 1 3 49 0 6 13 chain 7481 chr15 102531392 + 49429959 49430051 HY3 101 - 0 92 174261 92 chain 5993 chr15 102531392 + 49456413 49456488 MER34A 573 + 0 75 185309 75 chain 33058 chr15 102531392 + 49467847 49468285 LTR2 463 + 0 463 79120 55 0 3 94 18 39 171 12 13 88 chain 52597 chr15 102531392 + 49476061 49476875 L1MA3 4352 - 3500 4315 57238 76 5 3 25 3 0 15 1 3 217 1 0 42 6 5 80 8 6 68 4 0 87 0 2 17 10 0 7 11 25 18 7 6 21 0 6 37 5 6 43 chain 6008 chr15 102531392 + 49482464 49482722 LTR37A 408 + 109 360 185167 18 165 158 75 chain 213308 chr15 102531392 + 49496916 49499984 L1PB1 5432 - 8 2897 18271 4 1 0 16 1 0 13 8 7 14 1 0 24 2 0 14 8 5 17 26 14 16 6 5 38 1 0 16 2 1 50 3 1 11 16 11 13 1 0 20 3 0 7 1 4 49 39 8 409 1 0 9 3 0 543 1 0 58 1 0 41 91 0 259 16 0 47 0 4 28 1 3 380 2 3 308 24 11 101 2 0 146 6 6 115 1 0 28 0 6 6 chain 5571 chr15 102531392 + 49505743 49505975 L1M1 2793 - 262 506 189357 17 0 3 8 131 145 44 1 0 20 4 0 7 chain 28573 chr15 102531392 + 49511334 49511703 THE1B 368 + 0 368 90852 172 2 1 92 0 1 4 1 0 98 chain 15972 chr15 102531392 + 49526657 49526962 THE1B 368 - 61 368 138447 58 11 10 7 1 0 18 5 9 5 0 2 29 1 0 37 52 51 81 chain 50463 chr15 102531392 + 49541815 49542405 LTR10C 591 + 0 591 58671 34 2 0 33 0 1 442 0 2 79 chain 34115 chr15 102531392 + 49551387 49551771 L1PA3long 6157 - 0 383 77462 168 1 0 215 chain 553066 chr15 102531392 + 49551778 49557915 L1PA3long 6157 - 0 6153 1060 259 1 0 489 1 16 2113 0 1 70 1 0 2008 4 1 628 0 4 127 0 1 436 chain 4412 chr15 102531392 + 49564633 49564683 MER5A1 166 - 31 81 201783 50 chain 28789 chr15 102531392 + 49569354 49569656 AluYa5 310 - 0 302 89944 302 chain 20984 chr15 102531392 + 49608570 49608812 L1PA5 6144 + 5892 6134 123975 242 chain 53583 chr15 102531392 + 49609447 49610075 L1PA7 6471 + 5649 6281 56619 49 1 3 560 1 3 17 chain 2143 chr15 102531392 + 49610077 49610104 L1PA7 6471 + 6281 6308 237213 27 chain 7091 chr15 102531392 + 49610113 49610192 L1PA7 6471 + 6317 6396 176825 79 chain 5611 chr15 102531392 + 49610194 49610265 L1PA7 6471 + 6399 6469 188971 59 1 0 11 chain 46163 chr15 102531392 + 49629722 49630287 L1PA7 6471 - 1 585 61885 10 2 0 139 0 2 10 1 0 11 1 6 140 0 15 251 chain 550278 chr15 102531392 + 49646430 49652449 L1PA2 6032 + 1 6031 1408 256 1 0 163 0 7 1588 0 7 1250 3 0 241 0 1 459 0 1 2044 2 1 12 chain 29588 chr15 102531392 + 49653753 49654323 L1PA15 4387 - 39 588 86244 19 5 0 14 4 2 36 22 21 8 1 0 28 21 16 17 1 0 27 41 40 15 2 1 63 0 1 106 1 0 38 8 6 63 4 0 12 0 2 14 chain 119877 chr15 102531392 + 49669927 49671850 L1MA1 4479 - 332 2294 31094 5 1 0 35 3 1 28 1 0 118 17 13 88 1 0 5 72 70 29 1 0 16 2 0 25 2 1 75 0 42 37 15 31 8 3 0 131 12 0 73 1 2 44 0 1 6 5 0 12 1 0 93 2 0 47 3 0 5 0 3 113 13 11 11 2 7 95 1 0 61 2 1 33 2 0 103 11 1 65 1 0 91 4 8 21 0 3 27 12 20 121 0 14 112 chain 549895 chr15 102531392 + 49688180 49694203 L1PA2 6032 + 0 6024 1460 71 1 2 184 1 0 1100 2 1 358 0 1 3256 1 2 1049 chain 215974 chr15 102531392 + 49694463 49697742 L1PA13 3608 - 205 3486 18112 7 2 0 12 1 0 13 11 10 6 1 0 20 4 20 40 3 1 54 5 7 52 1 0 11 1 0 20 1 0 21 46 41 162 9 13 167 0 3 75 2 0 224 0 13 105 0 1 17 4 3 19 0 4 211 7 8 57 0 3 35 1 0 13 16 17 150 7 6 4 0 1 230 18 14 18 0 3 90 0 1 101 2 1 192 5 4 44 0 3 9 6 3 267 0 10 136 2 0 11 0 1 87 1 0 12 6 4 18 2 0 17 2 1 17 6 2 16 2 0 17 1 0 29 3 1 23 7 8 72 14 12 65 28 17 19 8 5 12 2 1 20 13 10 12 chain 23372 chr15 102531392 + 49705311 49705686 THE1B 368 + 0 366 113804 13 2 0 34 0 1 63 6 7 58 50 41 149 chain 23068 chr15 102531392 + 49709004 49709306 L1PREC2 3366 + 2489 2789 115314 263 7 5 32 chain 131895 chr15 102531392 + 49795153 49796624 L1PA4 6152 + 4671 6143 27659 1367 0 1 104 chain 147707 chr15 102531392 + 49804788 49806763 L1PA8 5853 - 0 1972 24920 92 6 5 15 2 1 21 37 30 10 1 0 71 6 4 40 1 0 43 0 1 5 2 1 30 8 5 470 0 2 119 0 5 194 1 0 73 0 2 250 1 0 453 0 1 7 0 5 17 chain 12111 chr15 102531392 + 49834536 49834897 L1PB1 5432 - 2 318 151759 4 1 0 12 1 0 10 16 14 20 1 0 16 72 41 17 3 0 15 7 11 32 2 1 16 2 1 47 7 5 9 5 1 14 1 0 10 1 0 20 chain 68833 chr15 102531392 + 49838157 49838913 L1PA4 6152 - 1 757 48688 756 chain 84471 chr15 102531392 + 49838913 49839860 L1P1 4361 + 1410 2364 41729 38 0 4 131 0 1 207 0 2 571 chain 155682 chr15 102531392 + 49841535 49843453 SVA_D 2077 - 13 2000 23894 134 5 0 191 0 10 217 0 37 37 1 0 37 9 8 4 0 1 82 0 1 6 10 37 4 0 1 10 1 0 68 0 1 6 10 37 4 0 1 78 1 0 6 35 10 6 1 0 76 1 38 109 39 0 730 chain 2368 chr15 102531392 + 49842456 49842491 SVA_D 2077 - 905 940 68549 35 chain 2436 chr15 102531392 + 49842684 49842720 SVA_D 2077 - 1230 1266 68549 36 chain 96012 chr15 102531392 + 49874229 49878408 L1PA13 3608 + 770 3522 37820 121 2 0 227 0 4 153 1 0 25 1 0 118 1 4 8 1 0 78 22 26 86 16 14 220 0 1 48 7 8 19 36 30 67 2574 1178 68 2 0 14 1 0 48 1 0 25 6 5 26 120 100 13 5 0 14 1 0 4 chain 26354 chr15 102531392 + 49875493 49875848 MER41A 554 + 117 466 98597 19 3 0 88 14 10 128 0 1 63 0 1 4 1 0 35 chain 91325 chr15 102531392 + 49877038 49878046 L1PA4 6152 + 5140 6148 39187 148 0 1 255 1 0 604 chain 104997 chr15 102531392 + 49884139 49885513 L1P2 5180 - 3796 5178 35501 41 6 8 83 0 4 161 0 3 291 15 13 217 1 0 48 1 0 126 0 4 126 13 12 47 1 0 49 2 1 5 0 1 90 11 12 40 chain 122846 chr15 102531392 + 49888714 49890360 L1PBa 3878 + 1568 3219 30099 45 2 1 9 1 0 57 0 4 175 1 3 605 0 4 156 8 6 37 0 4 28 3 0 5 8 11 23 10 5 234 2 1 52 0 1 185 chain 32482 chr15 102531392 + 49904299 49904661 L1PA4 6152 - 9 372 80060 244 0 1 118 chain 33395 chr15 102531392 + 49906737 49907218 LOR1a 498 + 15 491 78574 32 1 2 135 34 28 62 4 1 152 0 3 61 chain 21377 chr15 102531392 + 49921043 49921304 L1PA7 6471 - 1 270 122593 98 0 8 163 chain 28537 chr15 102531392 + 49990726 49991126 LTR7 482 - 12 482 91012 37 13 14 107 1 0 4 0 1 12 0 31 39 0 1 109 7 44 71 chain 281953 chr15 102531392 + 49993028 49996539 HERVH-int 3825 - 0 3825 14538 329 0 2 161 3 213 456 1 0 54 0 1 311 0 1 287 0 4 290 4 31 215 1 0 39 9 0 164 7 8 33 15 0 326 0 1 120 1 0 57 21 0 6 0 112 24 1 0 10 1 0 23 0 1 4 1 0 7 1 0 50 9 12 4 1 0 103 1 2 20 23 22 41 2 0 5 0 2 88 1 5 181 chain 28838 chr15 102531392 + 49996548 49996953 LTR7 482 - 7 482 89729 42 13 14 107 1 0 4 0 1 12 0 31 39 0 1 109 7 44 71 chain 13194 chr15 102531392 + 50000815 50001144 L1PREC2 3366 - 318 613 147491 38 6 4 11 2 6 18 22 8 11 3 0 4 0 1 25 3 1 16 3 0 5 2 0 12 32 24 10 3 0 4 1 0 41 11 10 46 chain 25948 chr15 102531392 + 50005876 50006188 L1PA7 6471 - 759 1083 99558 49 0 4 42 0 3 198 0 4 21 0 1 2 chain 36699 chr15 102531392 + 50006188 50006622 L1PA7 6471 + 5712 6469 73961 166 0 323 268 chain 36426 chr15 102531392 + 50024248 50024706 LTR2 463 - 0 463 74330 44 0 4 36 16 17 362 chain 25389 chr15 102531392 + 50025986 50026452 LTR7B 505 - 0 505 102742 51 14 13 34 1 5 37 1 0 71 0 2 12 10 12 16 68 68 62 5 15 62 0 23 22 chain 22264 chr15 102531392 + 50026452 50026727 THE1D-int 1627 - 1324 1599 119057 275 chain 13266 chr15 102531392 + 50035220 50035433 L1MA3 4352 + 57 258 147225 52 11 1 45 3 6 14 5 0 83 chain 4398 chr15 102531392 + 50064188 50064243 MER33 330 - 267 322 201956 55 chain 550373 chr15 102531392 + 50070706 50076715 L1PA2 6032 - 0 6032 1399 1262 0 1 110 0 10 419 0 4 3512 0 7 84 0 1 622 chain 40664 chr15 102531392 + 50082146 50082608 L1PA4 6152 - 0 456 68347 15 6 0 441 chain 89159 chr15 102531392 + 50089032 50090016 L1PA3long 6157 - 0 990 39944 147 0 1 606 0 3 203 0 2 28 chain 29776 chr15 102531392 + 50094699 50095009 AluYg6 310 - 0 310 85564 310 chain 111853 chr15 102531392 + 50095910 50097356 THE1B-int 1605 - 0 1605 33703 144 5 7 107 0 1 12 0 1 4 2 1 54 6 5 13 1 12 452 1 122 200 13 38 432 chain 22715 chr15 102531392 + 50113617 50114101 L1PB1 5432 - 12 485 117011 15 2 1 13 1 0 21 1 0 23 3 1 14 8 5 19 25 12 12 8 7 35 6 5 16 2 1 33 1 6 14 15 9 12 1 0 7 2 1 24 1 0 8 0 3 115 9 23 18 chain 24595 chr15 102531392 + 50118356 50118653 L1PA6 6164 - 15 309 107020 38 11 8 248 chain 542316 chr15 102531392 + 50125428 50131564 L1PA4 6152 - 11 6152 2457 481 1 0 3949 0 1 252 1 4 839 0 2 613 chain 243821 chr15 102531392 + 50133535 50136681 HERVK22-int 3844 + 0 3137 16573 40 3 0 746 65 66 406 1 13 44 17 0 770 1 0 4 0 1 301 0 1 4 2 1 379 2 0 6 9 12 5 1 0 103 0 1 144 1 0 72 7 5 13 chain 4590 chr15 102531392 + 50175204 50175258 MER5B 177 + 48 102 199748 54 chain 2902 chr15 102531392 + 50179646 50179677 FordPrefect_a 431 + 357 388 227029 31 chain 7309 chr15 102531392 + 50240655 50240746 L1MB1 2102 + 1282 1373 175376 91 chain 117479 chr15 102531392 + 50241298 50242770 L1PA10 4194 - 33 1511 31972 11 2 1 33 15 12 571 8 14 71 0 3 371 0 1 390 chain 12792 chr15 102531392 + 50246362 50246509 MLT2A2 560 + 413 560 149094 147 chain 22999 chr15 102531392 + 50255146 50255542 L1PA11 4918 + 4205 4578 115626 125 7 0 6 1 0 71 2 0 26 2 0 41 2 0 14 1 0 20 53 47 12 2 0 11 chain 541624 chr15 102531392 + 50258023 50264470 L1PA7 6471 + 3 6461 2571 62 7 8 338 0 1 267 14 17 588 0 1 423 2 0 553 1 0 242 0 2 135 0 1 1008 0 1 84 0 1 100 0 1 307 0 1 677 0 1 269 0 1 74 1 0 22 1 2 166 0 1 187 1 0 4 0 1 72 1 0 186 2 1 111 0 1 202 1 0 339 chain 10851 chr15 102531392 + 50267604 50267733 MER2 342 - 125 255 156775 107 1 2 21 chain 74342 chr15 102531392 + 50290433 50291248 L1PA3long 6157 - 495 1311 46339 450 0 1 365 chain 45355 chr15 102531392 + 50291248 50291741 L1PA3long 6157 + 5664 6157 62652 493 chain 2798 chr15 102531392 + 50320896 50320949 MADE1 96 - 1 96 228757 22 11 53 20 chain 43735 chr15 102531392 + 50324236 50324790 L1PA8 5853 - 0 556 64525 23 3 12 58 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 181 0 1 4 4 3 78 chain 8869 chr15 102531392 + 50335747 50335868 Tigger2 2703 + 2414 2536 166292 41 1 3 6 1 0 72 chain 29233 chr15 102531392 + 50335868 50336177 AluYb8 318 + 0 309 87894 309 chain 46069 chr15 102531392 + 50365304 50365879 L1PA7 6471 - 19 592 61976 17 0 2 358 9 5 191 chain 25787 chr15 102531392 + 50391954 50392254 AluSp 311 + 1 304 100919 90 0 3 210 chain 286208 chr15 102531392 + 50393552 50397437 L1PB1 5432 + 1578 5422 14273 894 1 2 26 5 1 324 8 5 10 1 2 44 0 3 118 2 1 603 0 2 89 19 26 112 0 5 146 0 1 516 12 17 21 1 0 85 5 0 176 38 46 193 1 0 52 33 8 7 3 0 23 0 3 7 5 0 10 2 0 3 2 0 9 2 0 52 2 1 11 5 4 45 1 0 15 1 0 4 2 0 14 11 1 12 8 5 14 2 0 18 0 1 5 1 0 21 1 0 13 1 0 18 chain 10036 chr15 102531392 + 50406351 50406589 L1PB1 5432 - 28 243 160400 13 1 0 21 1 0 23 90 71 40 1 0 15 2 1 31 chain 43195 chr15 102531392 + 50415352 50415970 LTR8 732 + 8 730 65178 19 2 0 75 0 1 86 0 1 135 61 167 156 2 0 82 chain 17872 chr15 102531392 + 50418681 50418915 LTR39 781 - 503 736 133190 31 3 2 200 chain 21094 chr15 102531392 + 50423060 50423432 THE1D 372 - 0 356 123568 89 1 0 57 2 1 25 32 34 87 11 13 19 27 9 22 chain 5436 chr15 102531392 + 50424478 50424547 L1PA7 6471 + 5629 5698 190644 69 chain 64733 chr15 102531392 + 50424547 50425316 L1PA7 6471 + 5700 6465 50684 647 0 1 43 1 0 67 4 0 7 chain 51314 chr15 102531392 + 50431167 50431799 L1PA8 5853 + 5227 5853 58097 288 0 1 48 1 0 45 2 0 70 1 0 14 1 0 44 7 6 17 1 0 93 chain 22520 chr15 102531392 + 50436519 50436868 THE1D 372 - 0 372 117936 16 1 0 132 13 14 14 20 24 32 0 1 32 4 22 85 chain 119683 chr15 102531392 + 50449934 50451308 SVA_D 2077 + 17 2069 31152 618 0 193 20 1 124 19 0 2 9 0 1 31 1 4 15 0 1 39 5 360 616 chain 25643 chr15 102531392 + 50454726 50455002 AluYh9 303 - 27 303 101531 276 chain 294928 chr15 102531392 + 50462895 50468706 L1PB1 5432 + 1453 5424 13710 469 1 5 295 0 1 213 1 0 59 9 0 92 8 5 96 0 1 97 1 16 16 1 0 7 0 1 7 2 1 53 1595 0 51 0 4 70 1 0 773 0 1 151 1 4 15 2 0 287 7 6 139 0 1 119 0 4 94 16 1 7 41 0 11 4 1 477 185 12 19 1 0 13 27 20 53 2 1 16 1 0 43 1 0 23 15 6 18 8 5 14 2 0 24 1 0 20 2 1 13 1 0 16 1 0 4 chain 135242 chr15 102531392 + 50464333 50465917 SVA_B 1603 + 7 1603 26971 14 24 32 296 2 1 502 1 0 12 1 0 35 1 18 15 0 1 43 1 0 480 8 1 140 3 0 6 chain 22741 chr15 102531392 + 50487999 50488274 AluY 311 + 29 306 116863 103 6 7 34 0 1 132 chain 352433 chr15 102531392 + 50504301 50509419 L1PB1 5432 + 608 5408 11540 133 4 5 59 0 5 96 2 3 8 0 2 176 0 3 297 17 7 144 0 4 477 12 6 121 0 1 340 9 0 5 0 3 38 0 4 192 2 1 25 8 2 15 1 0 62 1 0 152 0 1 200 7 11 357 7 6 165 7 9 36 1 3 136 0 1 73 1 0 218 0 1 4 1 0 47 5 8 339 11 12 84 1 3 233 0 1 17 1 0 144 352 55 11 3 1 50 19 17 44 1 0 15 3 0 7 14 5 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 8793 chr15 102531392 + 50514084 50514191 HY1 111 + 0 111 166685 45 0 4 62 chain 4071 chr15 102531392 + 50529448 50529497 HY4 93 + 23 72 206299 49 chain 14495 chr15 102531392 + 50536887 50537107 7SLRNA 320 - 93 299 142901 154 4 0 7 25 15 30 chain 26258 chr15 102531392 + 50553909 50554205 AluSp 311 - 15 311 98983 296 chain 3864 chr15 102531392 + 50561122 50561170 L1MA4 2864 + 2749 2798 209383 18 0 1 30 chain 5966 chr15 102531392 + 50614802 50614939 MER33 330 + 49 193 185539 33 43 47 49 1 4 11 chain 9213 chr15 102531392 + 50628901 50629021 Tigger2b_Pri 1066 + 137 257 164494 120 chain 22736 chr15 102531392 + 50636769 50637049 AluSp 311 + 14 296 116889 45 0 2 235 chain 6466 chr15 102531392 + 50639647 50639726 U6 107 - 28 107 181500 79 chain 17301 chr15 102531392 + 50676334 50678702 L1MC1 2226 + 1304 2044 134784 69 1018 95 82 156 91 44 99 93 38 799 167 12 2 0 49 chain 7890 chr15 102531392 + 50683776 50683984 MER21A 919 + 11 245 171733 70 23 43 20 72 78 23 chain 21537 chr15 102531392 + 50777385 50777659 AluY 311 + 8 295 122014 26 7 24 68 4 0 169 chain 4629 chr15 102531392 + 50778975 50779042 L1PB1 5432 + 5328 5391 199308 4 1 0 14 2 0 24 1 0 21 chain 6878 chr15 102531392 + 50799548 50799634 Tigger4a 237 - 144 237 178379 64 0 7 22 chain 24388 chr15 102531392 + 50801566 50801873 AluY 311 + 0 311 108146 19 0 4 109 0 1 35 1 0 143 chain 14884 chr15 102531392 + 50815146 50815371 L1MA7 2200 + 123 348 141672 16 4 1 80 0 2 71 13 14 41 chain 23919 chr15 102531392 + 50839668 50839971 AluY 311 + 0 305 110812 128 6 11 131 1 0 30 2 0 5 chain 20361 chr15 102531392 + 50842848 50843142 L1PA7 6471 - 3 337 126027 9 2 0 44 0 4 40 29 63 101 4 8 65 chain 3489 chr15 102531392 + 50856359 50856397 MER30 238 + 186 224 215530 38 chain 13192 chr15 102531392 + 50859377 50859529 L1PA4 6152 - 2 154 147499 152 chain 27410 chr15 102531392 + 50877239 50877549 AluYb8 318 - 3 308 94936 5 3 0 247 2 0 53 chain 5403 chr15 102531392 + 50893961 50894033 MADE1 96 + 0 88 190959 33 1 17 38 chain 42836 chr15 102531392 + 50894194 50894683 L1PA6 6164 + 5619 6108 65607 489 chain 35396 chr15 102531392 + 50895513 50895935 L1PA5 6144 - 0 424 75679 9 2 0 86 0 11 83 1 0 4 6 0 231 chain 23435 chr15 102531392 + 50910499 50910768 AluY 311 + 14 284 113445 118 0 1 151 chain 16190 chr15 102531392 + 50912388 50912621 MER30 238 + 0 238 137783 93 4 7 9 3 0 7 3 8 114 chain 20363 chr15 102531392 + 50913156 50913379 AluYf4 310 + 82 305 126021 223 chain 25070 chr15 102531392 + 50956222 50956525 AluSc5 308 + 8 299 104461 195 12 0 96 chain 24280 chr15 102531392 + 50961008 50961329 MER41-int 2638 + 1517 1834 108778 140 1 0 6 6 5 138 7 5 23 chain 39452 chr15 102531392 + 50965523 50966172 L1PB1 5432 - 43 668 70089 19 1 0 20 28 23 30 14 1 16 1 0 44 1 0 15 2 1 39 1 0 12 2 0 11 4 0 12 1 0 11 1 0 19 5 0 13 3 0 25 1 0 104 0 1 39 3 18 152 chain 27014 chr15 102531392 + 50980633 50980941 AluSq10 312 + 4 312 96242 308 chain 24598 chr15 102531392 + 50981400 50981670 AluYk4 311 + 16 286 107006 270 chain 22562 chr15 102531392 + 50991542 50991835 AluSp 311 - 14 309 117752 25 12 14 256 chain 29217 chr15 102531392 + 50998306 50998611 AluYa8 305 + 0 305 87977 305 chain 24007 chr15 102531392 + 51012709 51013015 AluSp 311 - 6 311 110287 23 6 5 157 1 0 105 0 1 14 chain 24989 chr15 102531392 + 51016496 51016793 AluY 311 + 5 301 104858 128 1 0 168 chain 3094 chr15 102531392 + 51050845 51050889 MER102c 337 - 2 47 223040 21 1 2 22 chain 10539 chr15 102531392 + 51103852 51103985 MER50 708 - 138 270 158100 22 1 0 45 0 1 21 1 0 43 chain 100950 chr15 102531392 + 51103990 51105291 LTR12C 1709 + 0 1709 36523 96 1 9 544 0 280 183 9 6 104 13 6 24 0 1 186 0 1 28 0 130 15 24 22 74 chain 95645 chr15 102531392 + 51128699 51129983 HSMAR1 1287 - 0 1287 37917 148 3 4 198 10 11 205 6 7 111 6 9 27 0 3 213 1 6 215 11 0 130 chain 4680 chr15 102531392 + 51131134 51131245 L1MC1 2226 - 1129 1230 198755 23 21 19 8 6 0 13 2 0 38 chain 161287 chr15 102531392 + 51134639 51138199 L1PB2 3958 + 1516 3838 23152 47 41 21 15 1 0 141 1 0 5 1 8 214 293 0 146 3 0 10 6 7 11 11 4 93 6 10 234 10 0 10 269 0 67 306 13 67 17 0 285 1 0 172 7 1 24 313 0 123 4 5 35 0 1 22 3 1 55 1 0 11 5 0 61 21 16 94 16 15 12 0 1 43 2 1 64 2 1 61 10 8 23 6 5 59 chain 62020 chr15 102531392 + 51158877 51159942 MER4E 760 - 7 759 51891 167 319 0 100 0 4 455 4 6 20 chain 56299 chr15 102531392 + 51166908 51167970 MER4E 760 - 7 760 54964 315 342 20 16 7 0 116 2 1 6 0 4 11 0 17 247 chain 26475 chr15 102531392 + 51167251 51167557 AluSp 311 + 5 311 98145 306 chain 92164 chr15 102531392 + 51185737 51187112 THE1B-int 1605 + 18 1274 38914 410 3 28 79 11 14 365 155 0 39 40 43 259 0 5 14 chain 4545 chr15 102531392 + 51186639 51186697 THE1B-int 1605 + 810 867 200295 4 1 0 53 chain 27659 chr15 102531392 + 51195371 51195668 AluYg6 310 - 13 310 94187 297 chain 5959 chr15 102531392 + 51196400 51196521 Charlie1 1172 - 1025 1145 185606 28 36 35 57 chain 27156 chr15 102531392 + 51212307 51212609 AluYk4 311 - 9 311 95736 302 chain 4329 chr15 102531392 + 51232065 51232191 MER58C 217 - 9 139 202846 17 2 0 34 57 63 16 chain 62860 chr15 102531392 + 51246908 51247636 L1PA5 6144 - 15 756 51505 128 6 0 6 0 6 41 0 1 141 0 1 103 0 11 303 chain 20684 chr15 102531392 + 51262230 51262620 L1MA5A 2387 - 101 442 125025 44 35 17 10 3 0 26 6 5 27 2 0 49 7 6 34 1 0 36 2 0 3 3 0 39 16 0 34 2 0 11 chain 5343 chr15 102531392 + 51272006 51272073 MSTD 398 + 326 393 191612 67 chain 307937 chr15 102531392 + 51276505 51279923 L1PA5 6144 - 1 3427 13089 75 2 0 781 1 0 299 1 0 643 0 4 1089 0 6 489 0 2 38 chain 16438 chr15 102531392 + 51291901 51292085 L1PA3long 6157 - 0 184 137102 184 chain 13659 chr15 102531392 + 51313041 51313202 L1PA16 3655 - 570 731 145745 161 chain 60206 chr15 102531392 + 51319896 51322078 L1M1 2793 - 139 1068 52725 25 1 0 60 4 3 129 1 0 150 0 4 178 5 1 43 7 1 140 6 8 73 1321 75 39 chain 543396 chr15 102531392 + 51323826 51329846 L1PA3long 6157 - 2 6156 2281 146 1 5 1646 0 4 247 5 0 1716 0 1 1484 7 135 493 0 1 124 0 1 151 chain 13412 chr15 102531392 + 51335544 51335711 L1PA8 5853 - 0 165 146667 93 1 0 19 2 1 52 chain 18845 chr15 102531392 + 51337753 51337974 MER4E 760 + 531 752 130528 221 chain 28650 chr15 102531392 + 51362961 51363273 AluYa5 310 + 0 307 90523 126 5 0 181 chain 51373 chr15 102531392 + 51410743 51411300 L1PA2 6032 + 5475 6031 58047 543 1 0 13 chain 126324 chr15 102531392 + 51433173 51434781 L1PA10 4194 - 1145 2736 28999 38 23 1 54 1 0 4 5 3 232 7 0 17 0 3 73 0 1 19 16 22 317 0 1 38 0 4 764 chain 91513 chr15 102531392 + 51442652 51443997 L1PA16 3655 + 2282 3624 39127 395 1 0 114 0 2 95 17 16 87 8 7 89 3 0 37 2 1 53 65 92 16 6 4 264 1 0 23 4 1 12 20 6 7 5 0 21 chain 15420 chr15 102531392 + 51464948 51465124 AluY 311 + 83 259 140129 176 chain 506670 chr15 102531392 + 51465697 51471206 L1PA2 6032 + 0 6030 6422 96 0 524 868 3 0 4542 chain 4205 chr15 102531392 + 51494381 51494460 MER5A1 166 + 0 80 204479 20 10 17 9 6 0 34 chain 57187 chr15 102531392 + 51552783 51553546 LTR17 781 + 0 757 54415 59 1 0 86 12 11 23 1 0 54 1 0 16 7 6 72 1 0 430 chain 37620 chr15 102531392 + 51554146 51554617 MER9a3 513 + 0 494 72662 18 0 2 90 0 1 147 0 17 17 2 3 138 2 3 38 1 2 18 chain 29776 chr15 102531392 + 51574445 51574885 LTR14B 630 + 0 630 85565 18 2 1 36 0 149 70 0 28 98 20 30 110 11 14 43 0 1 32 chain 76451 chr15 102531392 + 51575093 51576179 HERVK14-int 1672 + 5 1665 45235 5 1 0 4 0 1 15 1 0 11 1 0 47 1 0 81 0 1 130 6 5 16 13 16 102 4 6 123 29 597 142 0 1 108 14 22 41 1 0 31 2 0 9 1 0 140 1 0 6 chain 25920 chr15 102531392 + 51577689 51578121 LTR14B 630 + 0 630 100339 56 0 149 69 25 53 73 8 18 29 0 8 71 32 35 69 chain 116177 chr15 102531392 + 51585731 51587195 SVA_D 2077 + 12 1739 32386 495 116 0 381 20 62 10 0 1 75 0 2 54 0 1 30 1 62 13 0 2 6 0 270 263 chain 3041 chr15 102531392 + 51586226 51586303 SVA_D 2077 + 663 740 138837 77 chain 16045 chr15 102531392 + 51618073 51618272 MER47A 366 - 86 294 138232 88 0 9 111 chain 13477 chr15 102531392 + 51639538 51639729 MER30 238 + 36 237 146424 71 4 0 8 2 19 65 3 0 38 chain 7683 chr15 102531392 + 51648420 51648519 MER41B 635 - 538 635 173031 33 2 0 64 chain 30497 chr15 102531392 + 51684390 51684851 MER1A 529 + 4 521 83436 14 20 27 97 13 19 34 12 54 150 0 3 58 3 1 60 chain 38579 chr15 102531392 + 51700737 51701196 L1PA5 6144 - 0 466 71322 55 0 4 83 0 11 9 8 0 304 chain 2751 chr15 102531392 + 51702961 51703008 MER53 195 + 119 168 229473 13 4 6 30 chain 29741 chr15 102531392 + 51707797 51708163 THE1B-int 1605 - 0 382 85689 48 6 17 18 0 5 294 chain 12271 chr15 102531392 + 51708672 51709317 MER4-int 2692 - 7 662 22686 47 13 9 142 0 7 118 0 5 123 4 3 6 0 1 35 1 2 7 1 0 11 8 11 36 7 6 86 chain 566576 chr15 102531392 + 51709413 51715443 L1HS 6032 - 3 6031 115 184 2 0 5844 chain 35937 chr15 102531392 + 51715443 51717332 MER4-int 2692 - 662 2561 22686 79 2 0 60 0 5 7 16 11 54 0 1 30 6 5 96 0 2 60 17 22 90 8 7 44 0 5 48 13 9 83 1 0 217 0 9 144 0 1 114 0 1 46 0 22 28 9 8 20 7 8 250 8 5 22 0 5 45 0 1 13 0 3 58 46 13 148 chain 31493 chr15 102531392 + 51720448 51720829 MER4A1 472 - 0 381 81655 381 chain 3907 chr15 102531392 + 51724308 51724352 L1M1 2793 + 2633 2677 208746 44 chain 207537 chr15 102531392 + 51727216 51731740 L1MA1 4479 - 324 4234 18678 4 1 0 9 1 0 31 8 6 27 8 7 119 3 0 5 1 0 18 1 0 36 5 4 30 1 0 13 2 0 18 10 9 52 6 7 5 1 0 16 2 0 25 1 0 80 3 0 35 0 2 12 0 8 18 0 1 6 0 5 34 13 11 113 3 0 12 8 12 102 4 0 12 1 0 66 0 5 24 18 13 158 5 3 48 1071 755 85 2 0 6 5 8 95 310 0 67 11 17 62 5 6 97 0 6 446 2 1 296 8 19 7 5 0 55 0 1 104 0 4 23 0 1 66 10 11 100 16 21 54 9 7 11 6 5 56 0 5 84 3 2 35 4 0 37 2 0 30 1 0 4 chain 18414 chr15 102531392 + 51800286 51800528 L1PA7 6471 + 6222 6464 131735 85 2 1 5 0 1 150 chain 253833 chr15 102531392 + 51801411 51804393 L1PA7 6471 + 3463 6465 16038 120 1 3 243 0 1 427 1 0 4 0 1 406 0 4 80 2 12 44 0 2 43 2 1 767 1 4 592 1 0 248 chain 6816 chr15 102531392 + 51811133 51811258 MER96B 391 - 33 157 178831 14 20 19 81 1 0 4 0 1 5 chain 68360 chr15 102531392 + 51841172 51842147 L1PB1 5432 - 5 943 49101 4 1 0 5 1 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 16 9 0 15 3 0 16 1 0 44 1 0 15 2 1 52 2 0 9 15 13 12 1 0 19 7 0 12 1 0 149 0 1 30 0 1 21 0 2 273 3 0 137 chain 400768 chr15 102531392 + 51861012 51866045 L1PA7 6471 + 5 6465 10064 198 2 1 96 40 210 66 0 1 139 5 118 156 11 9 4 0 1 257 15 55 349 1 0 102 2 3 395 0 3 117 6 11 275 0 2 11 2 0 56 0 1 280 1 2 317 4 3 337 0 2 1014 0 1094 20 7 5 170 1 0 339 2 4 50 0 3 4 1 0 30 1 0 150 chain 215919 chr15 102531392 + 51875322 51877615 L1HS 6032 - 0 2293 18113 2293 chain 85997 chr15 102531392 + 51879375 51880335 L1PA4 6152 - 9 969 41156 960 chain 539559 chr15 102531392 + 51883143 51889279 L1PA4 6152 + 0 6152 2893 481 3 4 127 0 2 190 4 17 423 2 1 498 1 5 56 2 0 54 0 1 1324 1 0 82 0 2 249 0 1 423 0 1 72 12 5 575 0 2 1557 chain 30222 chr15 102531392 + 51897721 51898039 AluYb9 318 - 0 318 84129 318 chain 33062 chr15 102531392 + 51903908 51904325 LTR12F 595 + 0 584 79113 92 1 168 324 chain 85838 chr15 102531392 + 51904579 51905638 MER11C 1089 - 0 1089 41217 11 2 1 82 0 2 202 1 9 182 8 9 254 1 18 52 0 3 264 chain 38535 chr15 102531392 + 51927294 51927798 MER41-int 2638 - 16 535 71388 50 8 5 110 10 26 96 0 1 61 0 1 169 chain 3452 chr15 102531392 + 51929803 51929843 MER41B 635 - 113 154 216184 13 0 1 27 chain 72596 chr15 102531392 + 51940347 51941361 L1PA8 5853 + 4892 5853 47222 49 0 1 67 2 0 334 71 0 131 1 0 90 1 0 42 4 2 70 2 1 14 1 0 43 5 19 5 0 2 35 0 9 47 chain 61172 chr15 102531392 + 51947469 51948238 LTR17 781 - 0 781 52265 40 4 26 387 0 1 18 10 0 86 2 0 65 1 2 156 chain 9072 chr15 102531392 + 51948238 51948355 MER2B 336 - 85 203 165206 112 0 1 5 chain 6684 chr15 102531392 + 51948922 51949007 MER34B 572 - 0 84 179799 25 1 0 59 chain 4199 chr15 102531392 + 51979371 51979417 MADE1 96 + 0 46 204549 46 chain 17251 chr15 102531392 + 51994078 51994288 L1PA5 6144 + 5930 6141 134920 75 5 6 130 chain 38166 chr15 102531392 + 52012821 52013337 LTR12F 595 + 0 595 71892 100 5 18 27 6 70 103 1 0 91 16 18 80 0 1 87 chain 13067 chr15 102531392 + 52069881 52070025 L1P1 4361 + 3670 3814 147962 144 chain 60875 chr15 102531392 + 52070025 52070693 L1PA3long 6157 + 5488 6157 52399 420 0 1 248 chain 479513 chr15 102531392 + 52079058 52085218 L1PA7 6471 + 5 6469 7743 66 0 1 114 26 25 29 48 48 41 40 233 83 13 13 60 8 18 57 1 76 177 1 22 167 0 4 158 0 3 147 0 11 78 33 4 116 0 7 6 11 4 335 0 14 8 0 2 271 2 0 228 1 2 517 0 1 398 0 4 458 18 20 633 0 4 142 5 1 623 5 0 109 3 2 75 2 1 328 13 12 346 0 1 150 0 1 10 chain 8622 chr15 102531392 + 52097806 52097957 L1MA3 4352 + 4179 4325 167625 19 0 4 33 4 0 25 2 0 22 2 1 5 1 0 29 1 0 8 chain 29020 chr15 102531392 + 52111993 52112440 L1M1 2793 + 2239 2679 88906 93 0 4 82 44 32 16 11 13 123 0 1 26 1 0 45 1 0 5 chain 24503 chr15 102531392 + 52128657 52128949 AluSc 308 + 16 308 107529 292 chain 8066 chr15 102531392 + 52176752 52176848 HY3 101 + 0 100 170664 40 0 4 56 chain 120012 chr15 102531392 + 52177486 52178904 SVA_B 1603 - 0 1596 31056 627 1 0 14 13 9 28 4 0 28 0 81 104 0 116 552 9 2 14 9 6 15 chain 21375 chr15 102531392 + 52197951 52198177 AluYb8 318 + 92 318 122603 226 chain 4768 chr15 102531392 + 52199409 52199474 U6 107 + 13 79 197713 51 1 2 13 chain 14050 chr15 102531392 + 52208037 52208382 MLT1A 405 + 0 381 144379 21 10 0 9 4 0 70 109 149 38 0 10 25 13 13 46 chain 4230 chr15 102531392 + 52244478 52244523 MADE1 96 + 2 47 204171 45 chain 28115 chr15 102531392 + 52256415 52256752 L1PA6 6164 + 5832 6162 92587 23 9 0 296 0 2 9 chain 19152 chr15 102531392 + 52278196 52278538 MSTA 426 - 0 426 129674 109 3 24 28 22 59 46 9 46 9 13 0 27 13 15 63 chain 23827 chr15 102531392 + 52294888 52295584 THE1D 372 - 12 372 111322 68 1 0 52 1 7 12 27 19 47 323 0 53 1 0 45 10 1 56 chain 29874 chr15 102531392 + 52309335 52309788 LTR7B 505 - 10 505 85189 37 18 17 54 0 1 21 1 0 83 29 0 30 6 68 69 0 10 105 chain 24745 chr15 102531392 + 52324877 52325181 AluSp 311 - 8 311 106195 191 2 1 111 chain 5796 chr15 102531392 + 52329043 52329107 MER41B 635 - 90 154 187186 64 chain 19235 chr15 102531392 + 52363097 52363330 AluY 311 + 63 305 129421 60 1 10 172 chain 21449 chr15 102531392 + 52376419 52376707 AluSp 311 + 9 294 122336 15 2 1 107 16 14 148 chain 4265 chr15 102531392 + 52382333 52382413 L1PB1 5432 + 5348 5427 203686 22 1 0 16 0 3 15 4 3 11 1 0 5 1 0 4 chain 4850 chr15 102531392 + 52388098 52388383 L1MB7 1623 + 1355 1597 196779 19 7 13 42 190 141 27 chain 7961 chr15 102531392 + 52397094 52397193 L1PA8A 6298 + 6191 6291 171273 51 0 1 48 chain 23772 chr15 102531392 + 52413807 52414088 AluYc3 301 - 15 301 111645 51 7 12 223 chain 8776 chr15 102531392 + 52454947 52455047 HY3 101 + 0 100 166786 100 chain 305027 chr15 102531392 + 52456884 52461238 L1PA11 4918 + 3 4092 13208 38 2 0 44 4 1 29 0 2 5 20 18 33 8 7 33 2 0 5 2 1 125 50 50 183 7 8 190 0 12 65 0 1 211 4 3 11 9 16 140 17 19 449 0 3 35 0 1 72 0 1 222 0 1 90 0 1 86 1 0 67 0 7 437 316 0 48 9 0 155 14 13 158 0 3 116 0 1 132 4 34 98 0 3 171 5 3 432 chain 3872 chr15 102531392 + 52475317 52475363 MADE1 96 - 50 96 209274 46 chain 18599 chr15 102531392 + 52478275 52478541 LTR56 451 + 111 379 131231 21 6 7 122 0 4 45 3 0 69 chain 11909 chr15 102531392 + 52512116 52512276 MER30 238 - 1 180 152560 110 4 20 13 0 3 33 chain 128878 chr15 102531392 + 52577644 52579153 SVA_D 2077 + 0 2077 28340 13 1 0 4 3 0 10 3 0 6 8 13 118 0 15 287 0 76 145 0 40 151 0 83 31 0 1 9 0 1 29 0 3 7 0 1 44 0 351 633 1 0 6 chain 28110 chr15 102531392 + 52589241 52589552 AluYf4 310 + 0 304 92607 266 2 0 30 5 0 8 chain 38793 chr15 102531392 + 52591867 52592431 LTR66 600 + 0 600 71025 23 0 11 135 9 11 13 0 1 35 7 8 78 11 13 85 12 8 65 0 15 30 0 1 28 1 8 32 chain 6519 chr15 102531392 + 52625196 52625399 MLT1A1 405 + 170 393 181095 13 2 4 13 102 120 73 chain 8769 chr15 102531392 + 52661866 52661980 MER85 139 + 14 139 166819 80 0 11 34 chain 41480 chr15 102531392 + 52708699 52709171 LTR15 485 - 10 485 67308 131 1 0 91 0 4 249 chain 62721 chr15 102531392 + 52730689 52731465 LTR17 781 + 0 781 51577 113 6 15 199 2 1 95 7 8 130 4 0 220 chain 125362 chr15 102531392 + 52751358 52752840 SVA_B 1603 - 0 1562 29286 154 8 1 498 0 127 10 47 7 765 chain 4734 chr15 102531392 + 52762892 52763890 Tigger2 2703 - 1237 1577 198126 44 918 260 36 chain 537869 chr15 102531392 + 52764595 52770750 L1PA5 6144 - 2 6144 3174 176 0 2 621 1 0 514 0 3 332 0 2 210 0 2 594 0 2 1089 2 0 289 2 0 857 0 1 279 16 7 75 10 0 194 1 0 893 chain 14836 chr15 102531392 + 52788094 52788282 L1PA6 6164 + 5970 6162 141820 126 0 8 49 4 0 9 chain 13627 chr15 102531392 + 52795051 52795371 L1MA4 2864 + 2524 2796 145871 135 2 1 15 3 0 10 120 77 4 1 0 30 chain 13468 chr15 102531392 + 52819122 52819340 MER30 238 - 3 238 146458 75 7 13 19 4 0 8 11 27 57 2 1 35 chain 22673 chr15 102531392 + 52830666 52831032 THE1D 372 + 0 360 117200 15 0 2 24 13 1 15 5 6 86 0 3 7 3 0 16 17 19 146 3 4 16 chain 117990 chr15 102531392 + 52831935 52833450 THE1C-int 1605 - 7 1560 31809 477 0 2 8 2 0 264 4 19 85 3 12 30 8 9 240 0 7 112 0 6 150 1 0 104 0 1 27 chain 10417 chr15 102531392 + 52867441 52867676 L1MA4 2864 - 790 1044 158609 62 8 0 13 9 14 11 12 20 6 0 1 11 18 23 11 8 16 66 chain 12868 chr15 102531392 + 52884758 52884945 MER30 238 - 0 200 148763 71 6 0 9 0 6 26 6 19 69 chain 5426 chr15 102531392 + 52889929 52889987 MER30 238 - 0 58 190742 58 chain 119467 chr15 102531392 + 52996319 52997711 L1PA6 6164 + 4769 6161 31235 64 0 1 572 1 4 441 1 0 305 3 0 5 chain 24853 chr15 102531392 + 53016653 53017016 THE1B 368 + 0 368 105611 169 1 0 29 0 3 7 30 32 27 0 1 35 1 0 7 1 2 56 chain 44513 chr15 102531392 + 53017474 53017985 MER9a3 513 - 0 511 63564 511 chain 27042 chr15 102531392 + 53030754 53031169 LTR7 482 + 0 467 96140 54 43 61 109 8 40 25 6 7 69 1 2 100 chain 306508 chr15 102531392 + 53031186 53035189 HERVH-int 3825 + 0 3825 13153 328 9 8 157 0 2 35 1 0 11 1 0 4 0 1 24 1 0 15 84 29 4 1 0 13 3 0 13 0 39 14 1 0 14 21 0 68 1 0 129 5 8 307 15 0 208 9 0 40 1 0 140 0 10 36 0 1 27 4 31 299 0 10 949 166 1 40 1 0 400 0 5 34 0 1 370 chain 30558 chr15 102531392 + 53036980 53037394 LTR7 482 + 0 475 83284 54 33 61 109 0 1 33 0 1 6 0 31 179 chain 4579 chr15 102531392 + 53056516 53056571 MSTD 398 - 343 398 199883 55 chain 5190 chr15 102531392 + 53063885 53063954 L1PB1 5432 - 19 85 193140 9 1 0 13 1 0 21 1 0 23 chain 235819 chr15 102531392 + 53107966 53111064 L1PA7 6471 - 1 2831 16989 628 295 0 178 1 20 23 1 0 311 0 4 17 0 2 149 6 5 667 1 2 535 2 5 48 0 1 46 1 0 189 chain 506666 chr15 102531392 + 53116387 53122329 L1PA6 6164 + 217 6156 6424 63 0 1 4 6 5 219 2 1 42 0 1 838 0 1 933 10 0 850 2 0 14 1 2 220 0 1 1253 0 1 15 1 0 4 0 1 628 1 5 9 1 2 826 chain 136769 chr15 102531392 + 53134210 53136103 L1PA5 6144 + 4575 6141 26684 408 327 0 261 0 1 640 1 0 256 chain 3185 chr15 102531392 + 53162025 53162061 LTR16A1 462 - 15 51 221215 36 chain 293270 chr15 102531392 + 53196966 53200394 L1PA2 6032 + 2587 6026 13807 84 0 11 609 0 2 99 2 1 167 2 1 622 1 0 434 0 1 1408 chain 32437 chr15 102531392 + 53200394 53200774 L1PA6 6164 + 5782 6162 80137 380 chain 11046 chr15 102531392 + 53212608 53212810 MER20 218 - 28 212 156032 30 6 0 69 9 12 19 2 0 24 7 0 4 4 0 18 2 0 8 chain 33520 chr15 102531392 + 53213981 53214410 L1PA8A 6298 - 8 439 78370 48 0 1 62 0 1 91 1 0 80 0 1 147 chain 8433 chr15 102531392 + 53227396 53227658 MLT1B 390 - 38 292 168662 80 141 134 4 1 0 36 chain 6153 chr15 102531392 + 53239722 53239869 L1PB1 5432 - 28 163 183956 13 1 0 21 1 0 24 2 0 14 23 19 17 3 0 8 8 7 12 chain 29718 chr15 102531392 + 53249627 53250020 L1PA8 5853 + 5465 5853 85770 99 1 0 44 2 0 74 8 6 6 0 1 38 8 8 22 1 0 90 chain 31915 chr15 102531392 + 53254066 53254427 L1PA3long 6157 - 0 357 80989 15 3 0 324 1 0 18 chain 3655 chr15 102531392 + 53255894 53255941 MER5A1 166 + 94 141 212711 47 chain 215211 chr15 102531392 + 53283380 53286548 L1PA13 3608 - 341 3522 18151 81 3 6 20 1 0 32 1 0 196 0 1 243 0 2 141 1 2 197 14 13 55 5 6 156 13 23 27 2 1 69 1 4 17 10 14 148 0 8 40 1 2 239 8 12 133 4 5 72 0 4 385 0 2 159 2 1 21 25 26 73 2 0 97 1 0 14 6 4 15 3 1 19 2 1 10 13 9 16 2 0 17 1 0 15 2 1 119 0 9 38 56 45 24 3 0 12 2 1 21 39 34 19 1 0 4 chain 27267 chr15 102531392 + 53302527 53302882 THE1A 353 - 0 353 95381 155 2 1 87 1 0 110 chain 118085 chr15 102531392 + 53302882 53304451 THE1A-int 1579 - 0 1579 31777 12 1 14 92 4 7 215 12 9 472 3 2 118 24 16 116 0 1 6 4 5 384 0 3 38 0 1 68 chain 26787 chr15 102531392 + 53304451 53304807 THE1A 353 - 0 353 97020 155 5 4 84 2 0 110 chain 50877 chr15 102531392 + 53317990 53318787 L1MA2 4263 - 209 983 58382 89 8 6 102 23 7 42 3 0 5 0 2 5 2 0 7 13 12 113 6 5 66 13 9 10 1 0 115 5 10 169 chain 3717 chr15 102531392 + 53324192 53324249 MER5A 189 + 52 111 211672 17 6 8 34 chain 257312 chr15 102531392 + 53343215 53346528 L1PA10 4194 + 806 4161 15862 163 0 2 133 0 3 74 0 2 103 11 8 153 1 2 6 1 0 206 4 6 142 14 13 187 5 7 312 1 0 162 1 0 4 0 1 81 13 47 26 0 1 961 1 7 139 1 0 111 0 1 118 1 0 129 5 2 32 1 0 11 chain 111433 chr15 102531392 + 53355221 53356469 L1PA4 6152 + 4893 6143 33828 408 0 1 736 8 9 96 chain 11123 chr15 102531392 + 53377397 53377544 L1PA16 3655 - 76 225 155722 26 2 0 32 0 4 87 chain 552138 chr15 102531392 + 53427639 53433672 L1PA2 6032 - 0 6032 1174 5776 1 0 256 chain 24009 chr15 102531392 + 53436813 53437131 HSMAR1 1287 - 955 1278 110278 207 13 18 98 chain 87905 chr15 102531392 + 53444783 53445770 L1PA4 6152 + 5165 6152 40411 139 0 4 838 4 0 6 chain 127212 chr15 102531392 + 53448046 53449397 L1HS 6032 - 0 1351 28766 1351 chain 9201 chr15 102531392 + 53459751 53459881 MER85 139 - 0 137 164548 29 13 20 88 chain 525422 chr15 102531392 + 53475445 53481395 L1PA5 6144 + 3 6131 4640 1852 0 165 270 15 15 845 2 0 1191 0 4 513 1 0 289 0 1 912 0 11 60 chain 37024 chr15 102531392 + 53497670 53498200 L1PA8 5853 - 0 504 73487 14 0 1 34 24 0 44 1 0 19 4 3 16 0 1 20 0 1 4 1 0 14 1 0 59 0 2 12 2 0 45 1 0 215 chain 233421 chr15 102531392 + 53568612 53571696 L1PA11 4918 + 1421 4495 17122 189 0 3 90 0 1 59 0 1 51 3 0 281 0 1 105 2 3 37 1 0 93 2 1 204 7 0 277 10 9 715 0 1 154 16 11 32 0 1 499 19 19 69 1 0 7 4 0 59 21 17 4 0 1 54 0 8 11 1 0 7 chain 54225 chr15 102531392 + 53571700 53572369 L1PA8 5853 - 0 663 56210 93 1 0 19 2 1 61 1 0 72 2 0 43 1 0 374 chain 6615 chr15 102531392 + 53576542 53576681 MIR 256 + 52 192 180335 12 2 0 5 0 2 45 36 37 39 chain 18624 chr15 102531392 + 53596832 53597200 MSTA 426 + 0 408 131153 56 1 0 52 0 21 5 0 3 60 72 69 30 29 49 63 chain 77274 chr15 102531392 + 53632386 53633309 L1PA7 6471 - 1 928 44842 7 7 0 46 1 2 138 0 8 565 1 4 79 1 0 78 chain 4873 chr15 102531392 + 53641872 53641935 L1MC3 1789 + 1257 1317 196558 54 3 0 6 chain 151815 chr15 102531392 + 53672780 53674456 L1PA3long 6157 - 5 1694 24361 741 0 14 791 1 0 143 chain 16894 chr15 102531392 + 53691566 53691925 THE1C 375 - 0 373 135857 26 1 0 137 136 151 59 chain 5336 chr15 102531392 + 53696273 53696495 MER21C 908 + 599 813 191683 44 141 133 37 chain 15963 chr15 102531392 + 53710920 53711162 THE1C 375 - 0 239 138478 169 34 31 39 chain 30602 chr15 102531392 + 53719040 53719475 LTR7Y 441 - 0 441 83196 211 55 70 57 9 0 103 chain 291063 chr15 102531392 + 53720733 53724226 HERVH-int 3825 - 0 3825 13954 225 3 8 254 8 218 39 9 11 651 1 0 391 3 13 299 7 33 222 3 1 18 0 1 660 0 3 13 0 2 8 0 1 54 3 2 43 0 51 24 1 0 10 1 0 38 5 0 35 0 32 465 chain 30371 chr15 102531392 + 53724226 53724660 LTR7Y 441 - 0 441 83737 197 68 84 57 9 0 103 chain 82637 chr15 102531392 + 53731707 53732823 L1PA8 5853 - 6 1122 42488 87 5 4 15 2 1 27 41 38 67 2 0 46 1 0 117 0 1 84 0 4 340 5 7 17 0 1 260 chain 41022 chr15 102531392 + 53761248 53761690 L1PA2 6032 - 6 448 67869 442 chain 9830 chr15 102531392 + 53771000 53771203 Tigger3a 397 + 43 255 161451 7 2 0 38 64 74 82 0 1 10 chain 12832 chr15 102531392 + 53776862 53777007 MER107 203 + 0 145 148921 145 chain 142267 chr15 102531392 + 53786996 53788541 L1PA2 6032 - 0 1545 25762 1545 chain 95013 chr15 102531392 + 53788541 53789565 L1PA2 6032 + 3460 4484 38062 1024 chain 5093 chr15 102531392 + 53791912 53791983 MLT2C2 476 - 225 299 194154 5 1 0 16 0 4 49 chain 14592 chr15 102531392 + 53792075 53792445 L1PB1 5432 - 2 327 142620 4 1 0 4 1 0 18 1 0 11 1 0 23 1 0 5 1 0 19 2 0 14 12 9 15 42 30 40 2 1 16 2 1 51 3 1 9 5 1 12 6 0 12 1 0 19 7 0 10 chain 30729 chr15 102531392 + 53795088 53795509 L1PA8 5853 + 5438 5853 82986 126 1 0 44 2 0 45 6 7 18 2 1 8 4 3 50 2 1 19 1 0 93 chain 553413 chr15 102531392 + 53832830 53838874 L1PA2 6032 + 3 6028 1016 203 5 6 2565 0 1 4 1 0 298 0 1 142 20 3 2795 4 0 7 chain 12045 chr15 102531392 + 53862597 53862778 L1PA17 2846 + 2514 2693 152008 19 1 0 67 1 0 22 0 2 12 1 0 14 2 1 42 chain 26755 chr15 102531392 + 53877312 53877699 THE1D 372 - 0 370 97148 179 25 27 90 19 0 74 chain 73844 chr15 102531392 + 53912672 53913627 L1PB1 5432 + 4144 5103 46595 314 8 7 161 3 0 81 0 1 89 1 9 102 1 0 163 4 0 8 0 4 20 chain 61414 chr15 102531392 + 53918278 53919055 LTR17 781 - 0 781 52146 12 0 1 234 1 2 101 2 3 29 0 1 71 0 1 70 8 7 249 chain 8145 chr15 102531392 + 53926589 53926710 MER30 238 - 0 115 170259 45 4 1 63 3 0 6 chain 540082 chr15 102531392 + 53976396 53982418 L1PA3long 6157 + 1 6152 2807 71 0 1 78 1 2 426 1 0 131 0 1 31 1 0 25 11 139 807 0 1 2857 1 0 1581 chain 24190 chr15 102531392 + 54032504 54032781 AluYc 301 - 12 290 109274 173 0 2 15 1 0 88 chain 4555 chr15 102531392 + 54033025 54033105 MIRb 242 + 99 179 200162 24 0 14 7 14 0 35 chain 16955 chr15 102531392 + 54072155 54072452 THE1B 368 - 66 368 135714 61 15 13 14 0 4 10 1 0 4 41 44 42 2 3 107 chain 28599 chr15 102531392 + 54074292 54074668 THE1C 375 - 0 375 90738 26 1 0 151 5 4 12 0 1 181 chain 46676 chr15 102531392 + 54083807 54084390 LTR14C 587 - 0 587 61474 129 17 18 148 8 11 281 chain 4179 chr15 102531392 + 54096427 54096481 MLT1D 503 + 432 486 204834 54 chain 7431 chr15 102531392 + 54096498 54096638 L1MC3 1789 + 1260 1382 174568 48 3 0 9 28 14 46 1 0 5 chain 122736 chr15 102531392 + 54097942 54099289 L1PA3long 6157 + 4810 6157 30147 1347 chain 4732 chr15 102531392 + 54101899 54101975 MADE1 96 + 2 96 198138 28 5 6 13 0 17 30 chain 44634 chr15 102531392 + 54102491 54103003 LTR6B 557 + 2 557 63444 34 0 46 157 2 0 162 1 0 156 chain 35503 chr15 102531392 + 54115054 54115498 MER4A1 472 - 0 465 75551 226 0 21 218 chain 197380 chr15 102531392 + 54115513 54118161 MER4-int 2692 - 0 2685 19397 10 0 1 6 1 2 37 0 12 170 0 1 67 0 3 106 5 0 6 2 0 142 2 1 115 2 0 8 1 0 128 11 12 61 4 5 56 10 7 125 0 2 8 0 1 80 0 2 107 0 1 44 0 8 163 0 3 63 0 1 209 0 1 108 0 1 83 15 12 56 1 2 31 0 9 63 1 10 425 1 0 10 2 0 47 3 4 21 3 1 24 1 0 4 chain 37536 chr15 102531392 + 54124061 54124663 MER4C 627 + 5 598 72770 79 25 0 29 0 4 102 8 11 83 43 49 50 12 16 25 1 0 145 chain 219821 chr15 102531392 + 54145856 54149219 L1PA11 4918 - 410 3479 17891 20 1 0 14 3 1 23 0 1 42 25 22 57 5 0 270 300 0 741 0 1 399 1 0 45 38 45 65 24 22 200 1 2 153 0 1 120 0 4 12 10 9 34 1 3 30 30 15 56 2 1 5 6 0 61 0 13 29 12 13 164 1 2 41 3 8 28 10 13 14 0 3 267 chain 3357 chr15 102531392 + 54160470 54160509 MamRep1527 640 + 222 261 217939 39 chain 507344 chr15 102531392 + 54179774 54186490 L1PA7 6471 - 1 6465 6379 63 0 10 32 3 6 14 1 0 19 6 7 15 0 9 661 7 11 675 2 1 223 1 0 386 1 0 80 0 1 369 311 0 347 5 6 323 0 1 382 0 4 157 1 0 28 1 2 359 20 5 225 0 1 286 0 3 159 0 3 247 0 3 5 3 1 62 8 27 74 0 1 421 9 14 165 3 0 59 13 14 31 1 0 32 16 16 35 8 20 126 55 57 181 chain 19410 chr15 102531392 + 54191788 54192029 AluSp 311 - 21 281 128920 36 0 18 124 0 1 81 chain 22121 chr15 102531392 + 54198896 54199268 THE1D 372 - 0 372 119697 32 1 0 71 1 0 73 1 6 29 1 0 5 0 1 50 32 43 10 14 0 52 chain 45654 chr15 102531392 + 54220255 54220767 MER9a1 513 - 0 513 62351 499 0 1 13 chain 3553 chr15 102531392 + 54256746 54256785 MADE1 96 - 57 96 214494 39 chain 40446 chr15 102531392 + 54257765 54258215 L1PA3long 6157 - 0 450 68669 450 chain 27729 chr15 102531392 + 54277199 54277530 L1PA8A 6298 - 10 342 93941 40 5 6 286 chain 42790 chr15 102531392 + 54296515 54297248 L1MA2 4263 - 162 880 65670 25 3 0 6 22 16 18 1 2 59 23 21 21 12 12 120 1 0 5 9 7 44 9 10 10 10 13 49 1 0 78 5 1 14 7 6 181 chain 24734 chr15 102531392 + 54316834 54317141 AluY 311 + 1 308 106254 93 0 1 21 0 3 183 4 0 6 chain 15983 chr15 102531392 + 54325043 54325329 L1PB1 5432 + 5167 5427 138397 53 2 1 16 1 0 44 1 0 15 14 1 30 7 4 15 2 0 27 1 0 18 1 0 13 1 0 18 2 0 5 chain 70348 chr15 102531392 + 54343959 54344709 L1PA2 6032 - 2 752 48240 750 chain 450250 chr15 102531392 + 54348263 54353325 L1PA4 6152 + 1092 6152 8761 2423 0 1 582 6 5 140 4 3 402 2 0 1262 0 1 241 chain 168068 chr15 102531392 + 54365080 54367119 L1PA7 6471 - 3 2047 22277 9 2 0 835 0 3 408 0 1 227 0 1 177 3 0 111 0 1 15 0 4 252 chain 33847 chr15 102531392 + 54368308 54368672 L1PA2 6032 - 4 368 77853 364 chain 94917 chr15 102531392 + 54418746 54419897 L1PA7 6471 + 5300 6454 38118 321 0 3 79 0 1 598 7 6 146 chain 189169 chr15 102531392 + 54476465 54478561 L1PA4 6152 - 1 2096 20130 52 1 0 798 1 0 82 1 0 554 0 1 507 0 1 100 chain 89300 chr15 102531392 + 54483253 54484329 L1PA7 6471 - 7 1092 39888 5 2 0 507 1 0 249 1 0 78 1 4 117 11 21 104 chain 7865 chr15 102531392 + 54489174 54489266 L1PA4 6152 + 6061 6152 171901 86 1 0 5 chain 13343 chr15 102531392 + 54496205 54496476 L1PB1 5432 + 5168 5423 146921 52 2 1 10 7 6 44 1 0 21 15 7 17 3 1 5 1 0 14 2 0 24 1 0 7 1 4 11 1 0 12 1 0 19 chain 156104 chr15 102531392 + 54511095 54512803 L1PA3long 6157 + 4445 6157 23845 865 0 4 843 chain 13573 chr15 102531392 + 54560158 54560325 L1PA8 5853 - 0 165 146079 93 1 0 19 2 1 52 chain 126399 chr15 102531392 + 54593508 54595027 L1PA7 6471 - 21 1557 28973 747 1 0 82 1 0 540 0 1 4 5 24 98 1 0 40 chain 6026 chr15 102531392 + 54596765 54596849 MER67D 511 + 66 150 185016 13 0 1 5 2 1 64 chain 22736 chr15 102531392 + 54617619 54617898 L1PA6 6164 - 8 287 116890 279 chain 114068 chr15 102531392 + 54631480 54633115 L1PB1 5432 - 5 1585 33083 5 2 0 17 2 1 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 16 6 6 2 0 15 1 0 45 1 0 15 2 1 47 21 15 12 1 0 12 1 0 8 3 0 12 33 11 297 3 2 5 0 2 161 4 7 298 1 0 484 chain 20978 chr15 102531392 + 54633930 54634189 AluY 311 + 38 298 123996 94 10 11 155 chain 13861 chr15 102531392 + 54663939 54664310 L1MA8 2339 + 1932 2265 145030 26 2 0 51 1 0 62 122 95 28 8 3 22 16 14 23 1 0 9 chain 4122 chr15 102531392 + 54677414 54677460 L1MA4A 3247 + 1726 1772 205628 46 chain 11641 chr15 102531392 + 54692954 54693087 L1PA5 6144 - 4 137 153734 133 chain 265253 chr15 102531392 + 54724609 54727942 L1PA7 6471 + 3119 6466 15428 244 0 1 133 1 0 53 0 5 180 6 7 66 0 8 118 0 2 15 0 1 607 5 6 14 0 1 339 0 1 34 1 0 24 5 0 41 0 1 60 0 1 82 0 1 14 8 0 7 4 13 225 2 1 4 0 1 191 0 4 448 0 2 46 0 1 177 17 11 151 5 0 6 chain 76979 chr15 102531392 + 54727959 54729027 L1PA8 5853 + 4878 5853 44981 128 1 0 6 9 3 292 77 1 184 3 0 70 1 0 46 2 0 71 1 0 21 1 0 39 4 3 18 1 0 93 chain 523634 chr15 102531392 + 54737030 54743110 L1PA5 6144 - 15 6144 4799 152 0 1 4 1 0 376 8 22 154 0 6 113 0 4 668 2 1 282 1 5 660 0 15 26 1 5 439 1 0 2051 7 9 316 0 3 58 8 7 752 chain 11899 chr15 102531392 + 54747041 54747355 L1PB1 5432 - 14 308 152607 14 1 0 11 1 0 23 1 0 23 26 21 17 57 55 17 1 0 16 2 1 51 17 11 14 1 0 9 1 0 11 chain 5973 chr15 102531392 + 54765282 54765356 L1PA16 3655 - 123 198 185490 12 0 1 62 chain 14607 chr15 102531392 + 54766380 54767391 L1MA4A 3247 - 159 670 142558 55 1 0 50 100 76 17 3 0 3 3 0 29 1 0 6 660 192 83 chain 335119 chr15 102531392 + 54767522 54771213 L1PA3long 6157 - 15 3706 12023 1500 1 2 1461 3 2 726 chain 4287 chr15 102531392 + 54771428 54771480 L1MA4A 3247 - 3079 3131 203388 52 chain 6541 chr15 102531392 + 54786357 54786430 L1PA4 6152 + 6068 6141 180910 73 chain 30916 chr15 102531392 + 54788582 54789158 L1PB1 5432 + 4902 5423 82658 89 5 6 106 13 0 13 9 0 20 1 0 8 1 0 14 5 1 9 2 0 52 2 1 16 1 0 18 10 8 17 1 0 16 9 1 5 3 0 24 29 24 20 1 0 22 1 0 12 1 0 14 2 0 5 chain 88001 chr15 102531392 + 54834402 54835450 L1PA7 6471 - 3207 4257 40372 623 0 2 310 1 0 6 0 1 108 chain 259943 chr15 102531392 + 54835450 54838675 L1PA7 6471 + 3262 6465 15705 149 1 2 24 0 3 105 1 0 582 5 6 63 7 6 4 0 1 62 2 0 1294 0 6 12 28 2 38 1 10 14 0 1 52 0 2 31 18 1 49 0 3 260 0 1 414 3 0 6 chain 34610 chr15 102531392 + 54850073 54850460 L1PA3long 6157 + 5770 6157 76744 387 chain 4730 chr15 102531392 + 54865913 54866008 MER20 218 + 64 158 198166 13 20 17 14 2 4 46 chain 107018 chr15 102531392 + 54880729 54882724 L1PB1 5432 - 19 1694 34967 9 1 0 13 1 0 14 50 55 13 1 2 11 19 8 7 1 0 4 0 1 38 8 7 9 3 2 53 27 20 9 1 0 23 3 0 10 2 5 296 0 3 116 334 0 46 7 10 8 2 0 12 6 10 67 5 14 12 0 1 5 5 4 85 11 22 440 0 2 89 1 2 118 chain 49818 chr15 102531392 + 54886996 54887571 LTR14C 587 - 0 587 59145 64 0 4 377 0 8 134 chain 12156 chr15 102531392 + 54893084 54893264 MER30 238 - 0 198 151586 45 3 0 62 4 0 10 4 29 52 chain 26533 chr15 102531392 + 54901936 54902294 THE1C 375 - 13 375 97922 13 1 0 117 3 5 40 0 1 72 5 7 107 chain 24440 chr15 102531392 + 54934231 54934517 AluSp 311 - 25 311 107862 286 chain 537894 chr15 102531392 + 54991022 54997171 L1PA4 6152 + 6 6151 3167 187 0 2 247 26 20 111 0 3 1079 2 1 54 2 0 675 0 3 1899 0 2 675 0 1 415 0 2 167 8 1 590 1 0 11 chain 29355 chr15 102531392 + 55014832 55015244 MER11A 1151 + 705 1151 87270 117 0 50 12 18 0 36 0 1 60 6 7 163 chain 9211 chr15 102531392 + 55038472 55038894 L1MA6 2487 + 2054 2402 164498 13 5 2 51 11 10 57 231 161 14 0 4 13 7 4 14 1 0 5 chain 519009 chr15 102531392 + 55041472 55047613 L1PA5 6144 + 0 6141 5270 42 4 5 78 1 15 14 6 5 34 7 8 968 9 0 540 2 0 484 0 2 50 0 2 62 5 0 129 2 0 726 2 0 121 1 0 160 0 1 238 2 0 542 7 12 1419 0 1 90 3 0 393 chain 112516 chr15 102531392 + 55073011 55074322 SVA_B 1603 - 0 1583 33532 528 0 282 550 0 1 171 4 9 18 24 8 16 chain 113821 chr15 102531392 + 55075814 55077366 L1P3 4156 + 2551 4139 33142 85 0 2 86 0 1 6 2 1 146 5 9 36 0 13 55 0 2 501 2 0 25 0 2 32 0 1 18 0 1 29 1 0 51 0 5 13 1 2 197 10 0 10 0 20 97 1 0 8 1 0 6 0 2 92 1 0 9 2 1 24 chain 2797 chr15 102531392 + 55085421 55085453 L1PA8 5853 + 5821 5853 228768 32 chain 38294 chr15 102531392 + 55100253 55100734 MER41A 554 - 11 495 71717 115 0 1 29 8 10 329 chain 6964 chr15 102531392 + 55112829 55112915 MLT2D 439 + 2 88 177721 86 chain 510636 chr15 102531392 + 55142933 55149763 L1PA7 6471 + 0 6457 6106 614 9 7 281 39 39 105 3 4 163 8 12 747 1 6 56 1 2 127 0 4 473 5 6 237 11 16 104 7 0 17 23 0 471 2 1 235 0 1 382 87 48 42 0 1 171 0 1 20 3 8 589 2 3 97 337 1 531 1 3 511 0 3 174 2 0 7 0 2 135 chain 34757 chr15 102531392 + 55155282 55155791 L1PBa1 4058 + 10 512 76530 27 2 1 9 13 10 112 15 14 230 17 15 84 chain 547377 chr15 102531392 + 55163903 55170042 L1PA3long 6157 + 6 6157 1781 21 0 13 8 14 1 169 0 1 20 0 1 1613 7 12 2070 1 2 1373 0 4 843 chain 30141 chr15 102531392 + 55178364 55178696 L1PA5 6144 + 5800 6132 84344 332 chain 233764 chr15 102531392 + 55180209 55183365 HERVK22-int 3844 + 1 3844 17101 534 13 5 31 0 3 268 0 5 507 0 1 19 2 1 421 0 1 105 2 1 330 13 11 6 0 5 485 5 53 14 62 67 26 0 1 35 94 726 82 12 11 69 1 0 20 chain 50297 chr15 102531392 + 55192684 55193357 L1PA8 5853 + 5175 5853 58794 165 0 11 213 1 0 37 12 10 64 6 5 60 2 1 19 1 0 93 chain 19600 chr15 102531392 + 55199838 55200097 AluSp 311 + 6 265 128383 13 11 10 155 0 1 80 chain 9545 chr15 102531392 + 55212436 55212642 L1PB1 5432 - 129 318 162856 7 7 0 15 1 0 60 2 1 31 23 21 9 5 1 14 3 2 5 1 0 23 chain 115946 chr15 102531392 + 55212832 55214383 L1PBa 3878 - 688 2256 32480 41 0 4 85 7 6 18 0 3 27 0 1 192 12 17 87 2 0 5 9 1 4 0 1 32 0 3 378 0 1 141 0 1 80 0 4 80 15 14 4 0 1 40 0 3 85 0 1 33 1 2 173 chain 568866 chr15 102531392 + 55218266 55224297 L1HS 6032 - 0 6031 3 6031 chain 22815 chr15 102531392 + 55229050 55229332 L1PA7 6471 - 4 287 116508 242 4 5 36 chain 449567 chr15 102531392 + 55236968 55242408 L1PA6 6164 + 711 6160 8777 95 17 0 155 1 0 95 0 1 288 2 6 17 64 72 892 5 6 49 0 2 796 10 6 88 0 2 618 0 1 65 8 11 386 0 4 648 0 1 217 0 1 4 1 0 78 1 0 20 0 1 77 0 3 599 4 5 140 chain 89631 chr15 102531392 + 55260391 55261454 L1PA7 6471 - 614 1681 39770 146 0 4 91 1 0 800 0 1 25 chain 13415 chr15 102531392 + 55261455 55261610 L1PA7 6471 + 5856 6012 146654 7 0 1 148 chain 23313 chr15 102531392 + 55261611 55261907 L1PA7 6471 + 6012 6313 114136 255 10 15 31 chain 11476 chr15 102531392 + 55261921 55262054 L1PA7 6471 + 6328 6461 154397 133 chain 13321 chr15 102531392 + 55269580 55269756 L1PA8 5853 - 0 182 147004 93 1 0 9 0 1 7 1 0 52 0 7 13 chain 5081 chr15 102531392 + 55270819 55270942 L1PB1 5432 + 5315 5427 194279 12 8 5 14 2 0 24 1 0 22 1 0 7 7 6 10 1 0 7 2 0 5 chain 269796 chr15 102531392 + 55285488 55289171 L1PA8 5853 + 2187 5853 15189 294 0 4 37 5 0 360 3 0 37 11 7 76 48 70 208 2 3 23 12 13 28 1 5 26 51 20 128 3 4 325 1 7 159 9 12 162 9 1 77 4 0 52 0 1 73 0 1 84 0 1 4 1 0 518 0 2 555 1 0 46 2 0 68 2 1 20 7 5 40 19 17 92 chain 5469 chr15 102531392 + 55295713 55295801 MLT1C 463 + 344 431 190310 45 11 10 32 chain 11342 chr15 102531392 + 55349578 55349949 MLT1D 503 + 77 503 154917 37 186 219 50 4 23 19 5 8 70 chain 547937 chr15 102531392 + 55356191 55362189 L1PA2 6032 + 1 6029 1717 628 0 1 2373 0 21 122 0 3 31 1 2 500 0 1 543 0 4 1026 1 0 773 chain 244179 chr15 102531392 + 55369085 55373212 L1PB1 5432 + 2030 5422 16546 41 3 2 113 9 5 124 1 0 33 4 0 152 2 0 19 0 1 85 116 24 207 7 0 6 8 7 221 0 1 575 0 3 53 0 1 7 1 0 20 8 11 117 0 23 126 0 10 156 0 1 53 0 1 69 1 0 330 3 0 48 632 0 427 0 1 14 11 10 7 1 0 13 16 11 9 2 0 53 2 1 11 6 5 44 1 0 11 1 0 4 3 0 7 13 5 19 8 5 14 2 0 45 2 1 9 1 0 21 chain 7312 chr15 102531392 + 55369688 55369780 L1PB1 5432 + 4231 4322 175353 4 1 0 87 chain 54433 chr15 102531392 + 55371816 55372429 L1PA3long 6157 + 5544 6157 56075 153 2 1 422 0 1 36 chain 10696 chr15 102531392 + 55375269 55375417 L1PA8 5853 - 6 151 157431 62 1 0 25 1 0 19 3 2 37 chain 47017 chr15 102531392 + 55376881 55377504 THE1B-int 1605 + 962 1600 61190 210 3 6 66 6 12 43 3 0 10 1 8 5 0 2 276 chain 25001 chr15 102531392 + 55377516 55377873 THE1B 368 + 7 368 104780 162 1 0 20 3 7 4 1 0 10 0 4 16 1 0 9 13 12 117 chain 8136 chr15 102531392 + 55378791 55378894 L1PA7 6471 - 3 106 170302 103 chain 43211 chr15 102531392 + 55378960 55379445 L1PA4 6152 - 1 486 65160 485 chain 30202 chr15 102531392 + 55383414 55383732 AluYb8 318 - 0 318 84188 318 chain 112614 chr15 102531392 + 55388443 55389687 L1PA5 6144 - 627 1873 33497 737 0 2 507 chain 53293 chr15 102531392 + 55389692 55390296 L1PA5 6144 + 5532 6135 56831 427 1 0 176 chain 23794 chr15 102531392 + 55397882 55398218 THE1C 375 - 0 375 111508 26 1 0 154 16 15 36 5 38 34 1 9 63 chain 2809 chr15 102531392 + 55407197 55407238 L1PA11 4918 - 414 452 228632 15 1 0 15 2 0 8 chain 51480 chr15 102531392 + 55409676 55410236 L1PA3long 6157 + 5597 6157 57984 560 chain 20027 chr15 102531392 + 55419670 55419911 L1PA7 6471 + 6229 6470 127051 241 chain 491632 chr15 102531392 + 55427449 55434163 L1PA7 6471 + 8 6470 7285 40 9 10 34 5 335 12 0 3 622 1 0 185 0 6 164 0 1 166 0 4 103 1 0 79 16 17 28 1 0 357 0 2 346 0 1 78 6 9 26 3 4 161 321 0 63 0 2 230 0 4 397 2 0 713 0 15 731 0 5 203 3 0 228 7 1 114 0 3 113 0 1 86 3 0 88 305 0 129 11 14 71 0 1 45 3 2 7 0 1 93 2 7 130 26 25 147 chain 28530 chr15 102531392 + 55429901 55430213 AluYb8 318 - 9 318 91053 183 3 0 126 chain 532427 chr15 102531392 + 55435384 55441511 L1PA5 6144 + 3 6144 3919 156 5 1 275 0 1 713 0 3 337 6 1 70 0 1 309 0 5 437 0 1 863 2 0 26 1 0 11 0 1 389 0 1 63 0 2 703 0 6 43 0 3 204 1 0 205 0 3 1116 0 1 6 6 5 180 chain 7596 chr15 102531392 + 55444591 55444726 MER20 218 + 65 205 173570 12 9 12 49 18 20 47 chain 21366 chr15 102531392 + 55447808 55448065 L1PA15 4387 + 2907 3167 122631 78 0 3 179 chain 45400 chr15 102531392 + 55454396 55454915 L1PA4 6152 + 5615 6134 62595 293 1 0 130 0 1 95 chain 11034 chr15 102531392 + 55481761 55481918 MER30 238 + 68 238 156075 40 4 0 9 3 19 86 0 1 15 chain 22650 chr15 102531392 + 55527387 55527658 AluSp 311 + 24 294 117321 104 1 0 166 chain 2812 chr15 102531392 + 55527899 55527937 L1PB1 5432 + 5033 5071 228587 38 chain 16782 chr15 102531392 + 55528012 55528357 L1PB1 5432 + 5116 5427 136165 18 1 0 10 1 0 14 7 3 7 2 0 52 2 1 16 10 9 35 1 0 15 25 12 18 9 6 14 2 0 24 1 0 23 1 0 11 1 0 18 2 0 5 chain 21947 chr15 102531392 + 55553334 55553609 AluSg4 309 + 20 295 120435 89 2 1 12 0 1 172 chain 20103 chr15 102531392 + 55564385 55564622 AluY 311 + 71 303 126815 224 5 0 8 chain 51358 chr15 102531392 + 55572725 55573315 L1PA6 6164 - 16 607 58055 137 0 1 453 chain 5548 chr15 102531392 + 55578330 55578394 5S 121 + 26 90 189581 64 chain 21624 chr15 102531392 + 55588097 55588391 AluSq4 311 - 14 311 121684 27 10 11 121 5 7 131 chain 77355 chr15 102531392 + 55590459 55591508 MER11C 1089 - 26 1089 44800 134 10 9 54 0 1 127 0 1 38 1 0 7 0 4 18 0 1 74 66 63 146 1 0 63 4 8 60 0 9 246 chain 151783 chr15 102531392 + 55594425 55596679 SVA_F 1814 + 126 1813 24364 88 1 0 623 8 8 43 577 0 59 0 15 39 1 0 10 1 0 166 1 0 10 1 0 626 chain 3143 chr15 102531392 + 55595197 55595236 SVA_F 1814 + 847 885 222113 8 1 0 30 chain 34455 chr15 102531392 + 55595237 55595627 SVA_F 1814 + 888 1291 76986 4 1 0 56 3 18 308 1 0 17 chain 3951 chr15 102531392 + 55595683 55595761 SVA_F 1814 + 1046 1124 81312 78 chain 27717 chr15 102531392 + 55597079 55597405 LTR17 781 - 455 781 93982 326 chain 355027 chr15 102531392 + 55599996 55604044 HERV17-int 4347 - 0 4067 11476 792 0 1 4 3 1 1424 0 18 923 2 0 430 0 3 34 0 1 345 4 0 7 17 21 63 chain 39530 chr15 102531392 + 55604081 55604574 LTR17 781 - 8 526 69985 25 14 16 10 1 23 371 1 2 71 chain 153862 chr15 102531392 + 55606538 55608786 L1PA8 5853 + 3755 5847 24108 27 1 6 57 0 1 15 0 1 48 0 4 131 14 18 183 0 2 273 1 3 285 1 0 49 0 5 146 0 2 261 0 1 119 305 136 36 1 0 17 4 0 29 2 0 68 2 1 12 4 0 49 2 1 19 1 0 20 0 1 66 chain 22776 chr15 102531392 + 55614098 55614367 AluSp 311 + 8 277 116698 269 chain 3599 chr15 102531392 + 55618530 55618635 MIRb 242 + 26 129 213650 19 49 47 37 chain 12770 chr15 102531392 + 55627287 55627462 Tigger3a 397 + 221 397 149179 53 14 15 108 chain 13043 chr15 102531392 + 55628652 55628820 MER47A 366 - 100 272 148069 19 0 5 78 4 3 67 chain 3793 chr15 102531392 + 55655800 55655843 5S 121 + 47 90 210480 43 chain 23253 chr15 102531392 + 55679735 55680042 AluSp 311 - 5 311 114429 6 2 0 23 0 2 172 1 0 39 0 1 10 3 1 38 0 1 13 chain 22000 chr15 102531392 + 55684408 55684691 AluSc5 308 - 9 285 120229 203 10 3 70 chain 23120 chr15 102531392 + 55685914 55686265 MER51B 395 + 11 395 115039 23 13 32 34 0 6 40 0 1 98 16 15 40 1 9 86 chain 35441 chr15 102531392 + 55686854 55687350 LOR1a 498 + 10 498 75629 35 1 2 128 4 0 33 5 12 129 17 2 75 0 3 69 chain 22264 chr15 102531392 + 55689121 55689436 AluY 311 + 1 302 119055 37 2 5 63 8 17 9 21 0 159 5 0 11 chain 24243 chr15 102531392 + 55702552 55702868 AluSp 311 + 1 303 108972 38 14 0 264 chain 37676 chr15 102531392 + 55707323 55708092 LTR2 463 - 0 463 72578 47 311 0 22 2 7 387 chain 22736 chr15 102531392 + 55709932 55710304 LTR7 482 - 16 482 116888 33 13 14 113 1 2 12 8 39 25 6 7 10 1 11 49 0 50 61 1 0 4 4 5 31 chain 6951 chr15 102531392 + 55719155 55719238 LTR8 732 - 24 107 177799 83 chain 24517 chr15 102531392 + 55719254 55719563 AluSg7 307 - 10 307 107463 13 13 0 9 0 2 141 1 0 132 chain 24985 chr15 102531392 + 55719836 55720132 AluSp 311 - 15 311 104884 296 chain 24409 chr15 102531392 + 55725526 55725842 AluY 311 + 0 301 108031 51 16 0 81 0 1 168 chain 8944 chr15 102531392 + 55726753 55726858 BC200 147 + 0 105 165902 105 chain 34733 chr15 102531392 + 55733613 55733996 L1PA5 6144 - 0 383 76568 383 chain 2673 chr15 102531392 + 55737045 55737227 L1P1 4361 - 20 200 57752 12 2 1 23 1 0 144 chain 154998 chr15 102531392 + 55737238 55739987 SVA_A 1864 - 0 1854 23979 344 1 2 274 152 0 99 1 0 160 4 1 98 1 0 49 8 5 71 11 5 66 2 0 56 685 0 97 0 3 37 3 0 16 37 0 242 4 0 224 2 0 5 chain 1777 chr15 102531392 + 55737857 55737889 SVA_A 1864 - 915 947 179947 32 chain 7544 chr15 102531392 + 55737903 55738006 SVA_A 1864 - 665 767 54905 55 1 0 47 chain 2783 chr15 102531392 + 55738635 55738673 SVA_A 1864 - 1346 1381 54905 21 3 0 14 chain 1456 chr15 102531392 + 55739178 55739261 SVA_A 1864 - 978 1061 126579 83 chain 4762 chr15 102531392 + 55739261 55739320 SVA_A 1864 - 766 822 148572 7 3 0 49 chain 7138 chr15 102531392 + 55740086 55740572 L1P1 4361 - 200 680 57752 13 1 0 40 5 0 427 chain 136380 chr15 102531392 + 55752199 55756880 L1PB1 5432 + 1652 4693 26770 19 0 5 8 5 0 110 344 8 44 0 4 190 2 0 44 2445 1156 141 3 2 5 0 1 220 1 0 119 3 0 6 16 0 41 0 1 382 6 10 225 0 1 232 3 0 67 chain 76192 chr15 102531392 + 55771444 55772539 MER11A 1151 + 0 1151 45366 69 0 1 15 0 91 40 0 3 11 1 0 64 4 0 130 27 28 86 0 1 51 7 0 245 25 1 11 8 15 24 25 7 27 0 1 21 0 5 4 1 0 32 0 1 167 chain 32479 chr15 102531392 + 55776800 55777247 MLT2A1 477 - 0 477 80066 39 8 0 10 3 43 215 4 1 142 0 1 26 chain 47491 chr15 102531392 + 55779289 55779952 LTR12 884 + 0 861 60848 25 1 0 30 1 41 154 25 0 13 0 25 31 0 25 34 2 0 295 12 148 40 chain 25858 chr15 102531392 + 55786229 55786525 AluSp 311 - 14 310 100611 296 chain 26398 chr15 102531392 + 55790821 55791137 AluSp 311 + 0 310 98415 179 6 0 131 chain 26044 chr15 102531392 + 55793574 55793872 AluYk4 311 - 13 311 99846 298 chain 276123 chr15 102531392 + 55794858 55798116 L1PA6 6164 + 2884 6156 14867 11 0 3 756 0 1 710 0 4 557 0 1 391 0 4 339 5 7 334 9 8 146 chain 25672 chr15 102531392 + 55801102 55801466 THE1C 375 - 0 375 101399 25 1 0 23 0 4 137 2 0 5 0 2 83 21 29 67 chain 34902 chr15 102531392 + 55802909 55803356 LTR2 463 - 17 463 76339 7 1 0 12 3 0 16 1 0 29 0 1 317 0 3 61 chain 365101 chr15 102531392 + 55803384 55808472 HERVE_a-int 7009 - 19 4614 11227 22 34 26 15 6 4 32 2 0 24 1 0 13 3 1 6 1 0 30 1 0 27 3 1 54 3 0 26 4 0 9 2 1 55 7 5 28 1 0 3 1 0 42 6 5 21 1 0 4 325 0 33 1 0 7 2 0 5 1 0 16 2 1 9 1 0 31 1 0 45 1 0 136 2 0 79 2 1 12 1 0 20 2 0 57 1 0 3 1 0 14 2 1 65 6 7 30 2 0 259 1 0 11 1 0 87 1 0 23 1 0 16 1 2 24 2 0 10 1 0 70 11 9 9 0 4 18 1 0 108 10 1 34 118 9 1274 0 7 150 0 1 277 1 0 139 0 1 194 7 9 151 2 1 94 1 0 401 1 0 168 1 0 8 chain 9994 chr15 102531392 + 55805485 55805603 HERVE_a-int 7009 - 2681 2798 158241 107 1 0 10 chain 3333 chr15 102531392 + 55808472 55808509 LTR2 463 - 426 463 218349 37 chain 25352 chr15 102531392 + 55814471 55814829 THE1B 368 + 0 368 102941 44 0 15 104 12 11 18 5 2 99 1 0 75 chain 27750 chr15 102531392 + 55820212 55820650 L1PA15 4387 + 3936 4356 93868 168 1 0 27 1 0 53 2 1 22 15 10 39 18 15 43 3 1 14 5 0 27 chain 7443 chr15 102531392 + 55822080 55822165 THE1A 353 + 268 353 174493 85 chain 11338 chr15 102531392 + 55824889 55825113 L1PB1 5432 - 5 211 154925 5 2 0 18 1 0 13 1 0 21 2 1 23 2 0 15 1 0 4 2 0 16 19 9 6 1 0 60 2 5 10 chain 20896 chr15 102531392 + 55840628 55840872 AluSc 308 + 5 249 124289 244 chain 22381 chr15 102531392 + 55843071 55843387 MER1B 344 - 6 344 118582 27 23 48 136 3 0 127 chain 14736 chr15 102531392 + 55847719 55847878 L1PA4 6152 + 5989 6148 142153 159 chain 113422 chr15 102531392 + 55849296 55850762 L1PA10 4194 + 2690 4150 33246 667 15 16 188 5 0 129 4 3 208 0 3 178 5 4 30 7 4 30 chain 19543 chr15 102531392 + 55851852 55852121 L1PA10 4194 + 3051 3324 128538 201 11 10 42 0 5 15 chain 7518 chr15 102531392 + 55852121 55852266 L1PA10 4194 + 3325 3471 174053 59 0 1 6 10 12 43 10 8 17 chain 15722 chr15 102531392 + 55852270 55852464 L1PA10 4194 + 3474 3668 139205 194 chain 13894 chr15 102531392 + 55852464 55852635 L1PA10 4194 + 3671 3842 144942 171 chain 20081 chr15 102531392 + 55852636 55852876 L1PA10 4194 + 3845 4085 126885 240 chain 7343 chr15 102531392 + 55859231 55859319 L1PA16 3655 - 566 657 175137 80 0 3 8 chain 27427 chr15 102531392 + 55897593 55897951 L1P3 4156 + 3779 4136 94883 261 2 4 63 2 0 7 2 1 21 chain 6372 chr15 102531392 + 55915350 55915484 MER58C 217 - 1 142 182236 66 30 39 9 3 0 5 0 1 21 chain 22720 chr15 102531392 + 55918680 55918984 AluY 311 + 21 311 116981 36 8 1 68 7 0 185 chain 29790 chr15 102531392 + 55934090 55934401 AluYb8 318 + 0 311 85500 311 chain 28462 chr15 102531392 + 55937351 55937648 AluYg6 310 + 0 297 91331 297 chain 15513 chr15 102531392 + 55973036 55973357 L1MB8 1703 - 78 343 139844 22 69 15 95 1 0 58 23 22 53 chain 7620 chr15 102531392 + 55974153 55974249 MER2 342 + 136 234 173408 38 0 2 58 chain 11380 chr15 102531392 + 55981695 55981828 L1PA6 6164 + 6016 6147 154780 64 1 0 7 1 0 60 chain 9689 chr15 102531392 + 56010011 56010118 LTR7Y 441 + 334 441 162151 107 chain 41327 chr15 102531392 + 56010119 56010617 HERVH-int 3825 + 1 1176 67504 156 2 1 44 0 678 296 chain 12440 chr15 102531392 + 56010647 56010816 LTR7Y 441 + 232 399 150494 33 4 0 78 0 2 54 chain 24692 chr15 102531392 + 56024691 56024981 AluSp 311 - 11 301 106486 290 chain 16750 chr15 102531392 + 56049558 56049787 AluSq2 311 - 23 253 136254 132 1 3 42 10 9 44 chain 22925 chr15 102531392 + 56049880 56050181 AluY 311 + 0 290 115986 26 1 0 100 9 0 76 1 0 88 chain 20612 chr15 102531392 + 56085866 56086157 THE1B-int 1605 + 0 292 125256 25 3 0 5 12 15 52 4 5 190 chain 254971 chr15 102531392 + 56098099 56100970 L1PA5 6144 + 3257 6129 15982 658 1 2 484 0 1 892 1 0 835 chain 20265 chr15 102531392 + 56104561 56104830 AluSp 311 + 13 284 126328 35 10 9 75 0 3 149 chain 24663 chr15 102531392 + 56143680 56143974 AluSp 311 - 18 311 106655 161 1 0 132 chain 23235 chr15 102531392 + 56197889 56198149 L1PA5 6144 - 813 1077 113573 30 0 4 230 chain 75599 chr15 102531392 + 56198149 56198990 L1PA5 6144 + 5303 6144 45715 841 chain 27629 chr15 102531392 + 56203732 56204025 AluYg6 310 - 17 310 94267 293 chain 7752 chr15 102531392 + 56224134 56224227 L1MB8 1703 - 115 208 172591 93 chain 13588 chr15 102531392 + 56224227 56224395 THE1C 375 + 1 169 146025 168 chain 128399 chr15 102531392 + 56224395 56225887 L1PA5 6144 + 4661 6138 28475 633 3 0 61 0 2 52 9 0 411 7 8 170 6 0 140 chain 488527 chr15 102531392 + 56236219 56242159 L1PA5 6144 + 5 6144 7422 103 12 26 82 1 0 307 1 2 137 7 8 282 25 0 213 13 4 326 0 4 421 0 6 338 4 1 49 0 1 1011 7 0 233 0 213 62 0 1 472 0 1 148 2 0 841 0 4 843 chain 18567 chr15 102531392 + 56245946 56246178 AluSc 308 - 38 269 131314 140 1 0 91 chain 48846 chr15 102531392 + 56249753 56250324 L1PA6 6164 + 5588 6162 59841 367 0 3 57 2 3 4 1 0 140 chain 40125 chr15 102531392 + 56252368 56252905 MLT2A2 560 + 0 552 69146 193 2 5 204 0 11 77 17 16 7 0 2 37 chain 30003 chr15 102531392 + 56271537 56271849 AluYb8 318 - 5 317 84800 312 chain 101370 chr15 102531392 + 56279132 56280207 L1HS 6032 - 464 1539 36427 1075 chain 43409 chr15 102531392 + 56280215 56280683 L1HS 6032 + 5562 6030 64921 468 chain 3038 chr15 102531392 + 56290375 56290422 MLT2B4 540 - 14 63 224266 23 3 5 21 chain 7892 chr15 102531392 + 56293991 56294086 MSTD 398 + 0 95 171711 95 chain 28753 chr15 102531392 + 56295174 56295474 AluYa5 310 - 10 310 90102 300 chain 26239 chr15 102531392 + 56302682 56303011 THE1C 375 + 0 331 99055 259 0 2 70 chain 26865 chr15 102531392 + 56305807 56306163 THE1A 353 - 2 353 96761 137 14 12 27 0 1 64 2 1 23 3 0 86 chain 128269 chr15 102531392 + 56306163 56307743 THE1A-int 1579 - 0 1579 28503 75 0 2 65 11 7 736 1 0 86 0 1 11 7 6 87 5 1 20 1 4 194 0 2 38 0 1 243 chain 25980 chr15 102531392 + 56307743 56308098 THE1A 353 - 0 353 100094 28 0 1 126 10 8 80 2 1 109 chain 86187 chr15 102531392 + 56316473 56317526 MER11B 1079 + 2 1079 41082 223 0 5 86 1 18 436 0 2 186 0 1 98 12 11 11 chain 29512 chr15 102531392 + 56330140 56330566 MER57A1 433 + 0 433 86599 279 47 50 57 0 4 43 chain 4210 chr15 102531392 + 56335960 56336012 MER51A 677 + 206 258 204423 52 chain 26537 chr15 102531392 + 56349843 56350140 AluYk4 311 + 0 297 97902 297 chain 230402 chr15 102531392 + 56358339 56360938 L1PA5 6144 - 0 2607 17286 11 2 7 127 6 5 1308 0 1 964 1 2 168 0 2 12 chain 29176 chr15 102531392 + 56363835 56364142 AluYa5 310 - 3 310 88175 307 chain 49161 chr15 102531392 + 56375630 56376210 L1PA5 6144 + 5565 6141 59628 570 4 0 6 chain 24955 chr15 102531392 + 56399237 56399523 AluY 311 + 24 311 105027 108 0 1 178 chain 42883 chr15 102531392 + 56400027 56400583 L1P3 4156 + 3598 4137 65554 17 21 0 34 0 1 355 1 7 95 2 0 7 2 1 22 chain 176901 chr15 102531392 + 56401222 56403870 SVA_D 2077 + 0 2077 21260 18 12 0 12 0 25 669 0 3 34 3 0 147 227 0 9 80 0 27 23 10 39 3 0 44 0 1 40 0 5 128 50 0 136 1 0 22 127 0 15 1 0 4 24 0 13 54 0 665 10 0 11 chain 11498 chr15 102531392 + 56402133 56402344 SVA_D 2077 + 958 1093 62914 72 46 19 22 49 0 22 chain 2376 chr15 102531392 + 56402206 56402247 SVA_D 2077 + 1131 1172 78414 41 chain 1449 chr15 102531392 + 56402297 56402322 SVA_D 2077 + 1172 1198 78414 8 0 1 17 chain 4359 chr15 102531392 + 56402353 56402433 SVA_D 2077 + 1102 1182 62914 80 chain 2725 chr15 102531392 + 56402737 56402787 SVA_D 2077 + 1338 1436 62914 9 1 0 10 0 49 30 chain 1609 chr15 102531392 + 56402961 56402995 SVA_D 2077 + 1081 1115 78163 34 chain 3116 chr15 102531392 + 56402995 56403061 SVA_D 2077 + 1467 1533 146160 66 chain 1846 chr15 102531392 + 56403130 56403169 SVA_D 2077 + 1172 1211 78163 39 chain 4293 chr15 102531392 + 56408848 56408904 L1ME3A 1206 + 619 674 203324 9 1 0 46 chain 62546 chr15 102531392 + 56412004 56413008 L1MA3 4352 - 1410 4315 51657 124 0 4 43 28 31 10 7 8 8 5 0 82 0 3 30 13 15 66 6 5 143 5 9 39 0 1 8 1 0 29 15 16 10 1 3 46 0 1 203 0 1887 20 1 0 61 chain 27372 chr15 102531392 + 56419748 56420043 AluYg6 310 - 15 310 95042 295 chain 545722 chr15 102531392 + 56426816 56432826 L1PA2 6032 - 0 6032 1987 145 1 0 11 4 10 2304 0 2 429 0 1 2874 1 0 183 0 1 19 0 14 39 chain 490255 chr15 102531392 + 56441622 56447961 L1PA7 6471 + 19 6457 7353 220 28 36 137 13 0 61 1 0 104 3 0 5 14 0 9 36 35 117 7 12 56 0 65 294 7 103 432 1 4 44 2 0 6 0 5 132 0 3 693 0 1 47 0 1 56 1 3 189 0 4 371 2 3 230 5 0 37 9 4 6 0 4 64 1 0 568 85 0 72 0 3 223 1 2 189 0 8 87 1 4 315 0 1 386 1 0 115 0 3 26 0 2 92 1 2 233 0 1 4 0 3 18 0 8 475 2 0 5 chain 25849 chr15 102531392 + 56474041 56474487 MER1A 529 + 45 529 100661 35 10 55 61 4 2 90 20 17 22 1 4 133 38 33 32 chain 42306 chr15 102531392 + 56495674 56496212 MER41A 554 + 13 554 66262 74 2 3 234 0 1 205 0 1 23 chain 56272 chr15 102531392 + 56512751 56513615 L1PA15 4387 - 574 1445 54982 151 0 6 23 28 28 113 2 1 152 1 0 15 13 17 37 5 0 11 5 4 84 1 4 83 0 1 6 9 8 28 2 0 12 8 12 75 chain 4453 chr15 102531392 + 56520638 56520692 L1MCb 1641 + 972 1028 201304 35 0 2 19 chain 109062 chr15 102531392 + 56523820 56525289 THE1B-int 1605 - 0 1605 34431 17 0 2 155 0 3 73 3 4 175 5 7 197 1 3 72 11 120 320 0 25 168 2 12 13 5 8 87 20 0 103 1 0 41 chain 412607 chr15 102531392 + 56558540 56563675 L1PA6 6164 - 14 4846 9730 133 2 1 372 0 1 333 1 0 800 0 4 1128 0 2 149 0 3 229 0 1 141 326 1 593 0 14 67 1 0 860 chain 6771 chr15 102531392 + 56566740 56566823 U6 107 - 13 96 179168 83 chain 119789 chr15 102531392 + 56568373 56569888 L1PA8 5853 - 0 1519 31125 93 1 0 19 2 1 48 5 4 9 1 0 43 0 1 27 2 0 44 1 0 128 0 1 252 6 17 80 0 2 75 5 0 126 0 1 5 12 6 421 0 5 72 0 2 33 1 0 4 chain 552804 chr15 102531392 + 56603341 56609375 L1PA2 6032 - 1 6032 1095 2149 3 0 3140 0 1 485 1 0 256 chain 81691 chr15 102531392 + 56623938 56624828 L1PA2 6032 + 5139 6030 42894 556 0 1 334 chain 45960 chr15 102531392 + 56667921 56668429 L1PA3long 6157 + 5649 6157 62073 508 chain 25863 chr15 102531392 + 56684376 56684785 MSTA 426 - 0 426 100591 63 1 3 42 10 18 47 38 41 49 0 4 19 9 8 28 0 1 103 chain 20439 chr15 102531392 + 56688802 56689125 THE1B 368 + 0 353 125785 40 0 15 120 1 0 9 52 67 88 0 1 13 chain 4344 chr15 102531392 + 56689785 56689832 THE1B-int 1605 + 1545 1592 202686 47 chain 23010 chr15 102531392 + 56689844 56690178 THE1B 368 + 2 368 115575 42 0 15 113 2 1 24 28 46 125 chain 512066 chr15 102531392 + 56691187 56697340 L1PA6 6164 + 0 6162 5971 567 1 0 425 0 1 152 1 3 38 0 3 21 4 1 642 0 5 102 1 0 374 15 1 61 1 5 181 5 9 90 0 5 24 0 3 464 8 8 4 0 1 36 8 3 471 0 4 124 5 4 536 0 4 729 2 0 172 3 1 41 1 4 235 2 3 110 0 1 308 0 1 170 1 0 5 3 0 10 chain 42170 chr15 102531392 + 56713830 56714292 L1PA3long 6157 - 164 626 66438 462 chain 14876 chr15 102531392 + 56714292 56714464 L1PA3long 6157 + 5991 6157 141697 156 6 0 10 chain 9376 chr15 102531392 + 56715989 56716165 L1PB1 5432 - 9 172 163677 5 1 0 24 2 1 23 1 0 24 2 0 15 1 0 4 3 1 30 4 0 16 2 1 19 chain 4346 chr15 102531392 + 56724908 56724961 5S 121 - 31 84 202634 53 chain 15265 chr15 102531392 + 56725406 56725618 L1PA8 5853 + 5645 5847 140586 23 3 0 11 1 0 14 1 0 7 2 0 7 1 0 33 2 1 19 1 0 87 chain 149682 chr15 102531392 + 56728260 56730025 L1P1 4361 + 2587 4341 24664 726 9 13 316 24 0 9 0 13 12 1 0 474 1 0 155 1 0 23 2 1 12 chain 18848 chr15 102531392 + 56733671 56733910 L1PA15 4387 + 3585 3822 130522 228 2 0 9 chain 23462 chr15 102531392 + 56733939 56734224 AluY 311 + 9 288 113302 117 5 0 151 2 1 10 chain 9924 chr15 102531392 + 56750843 56751059 L1MC1 2226 - 192 398 160956 40 24 19 44 15 14 29 7 1 33 7 9 17 chain 119414 chr15 102531392 + 56768029 56769361 L1PA4 6152 - 13 1345 31260 5 1 0 1257 0 1 69 chain 13659 chr15 102531392 + 56778204 56778370 THE1C-int 1605 + 1429 1594 145749 13 1 0 152 chain 4190 chr15 102531392 + 56797187 56797233 MADE1 96 - 50 96 204689 46 chain 89313 chr15 102531392 + 56800325 56801709 L1PA13 3608 + 90 1451 39880 18 5 3 27 3 0 26 2 1 12 3 0 24 28 17 73 2 0 120 5 4 13 1 0 16 2 1 16 6 2 18 1 0 9 13 11 15 2 0 16 1 0 91 9 7 77 9 5 151 0 2 140 1 0 101 2 1 6 1 0 123 1 2 67 0 13 55 1 5 23 1 2 48 chain 530906 chr15 102531392 + 56801733 56808261 L1PA4 6152 - 0 6152 4093 10 0 6 244 2 0 1435 0 3 165 0 2 46 0 1 208 0 1 777 1 2 86 0 1 1092 403 0 652 0 5 14 8 12 20 0 1 129 1 2 359 3 4 64 0 1 315 14 15 480 chain 25657 chr15 102531392 + 56805799 56806193 L1P1 4361 + 1469 2165 101207 204 90 392 100 chain 7467 chr15 102531392 + 56806003 56806093 L1P2 5180 - 3607 3697 171247 90 chain 102224 chr15 102531392 + 56832387 56833618 SVA_A 1864 + 18 1844 36209 7 4 0 467 0 77 47 2 0 73 7 4 66 41 568 517 chain 3586 chr15 102531392 + 56833658 56833697 L1PA4 6152 - 953 992 209416 39 chain 89102 chr15 102531392 + 56833697 56834687 L1PA4 6152 + 5163 6151 39967 138 2 0 850 chain 32877 chr15 102531392 + 56846808 56847237 LOR1b 457 - 0 415 79401 309 17 0 53 0 3 50 chain 513887 chr15 102531392 + 56853617 56859773 L1PA6 6164 + 0 6162 5791 73 6 6 315 0 1 620 0 1 227 1 0 41 0 16 610 0 1 271 1 0 27 1 5 111 14 0 230 0 1 20 0 1 101 0 5 455 1 4 942 0 1 559 12 0 176 0 1 72 1 0 1115 0 1 138 1 0 15 chain 382919 chr15 102531392 + 56861398 56868800 L1PB1 5432 + 108 5420 10666 336 0 3 105 5 7 32 0 4 167 0 2 203 7 6 72 0 2 112 0 4 40 0 2 104 1 0 87 13 0 258 0 3 180 3 0 7 0 4 139 12 15 161 4 6 42 0 1 46 27 28 208 6 0 29 1 2 71 1 0 217 3 5 7 0 1 7 6 9 38 6 9 42 0 4 133 1 0 56 0 1 366 1 2 49 7 8 29 1 0 4 0 1 104 0 1 13 0 1 26 2 3 24 0 7 167 0 3 49 1 0 7 1 2 122 0 2 87 3 5 156 289 38 74 0 4 120 6 10 12 4 0 96 0 6 380 1932 67 50 2 1 16 1 0 43 1 0 16 3 0 6 20 10 14 2 0 6 1 0 14 2 0 24 1 0 21 1 0 13 1 0 12 1 0 4 chain 2545 chr15 102531392 + 56866830 56866857 L1PA2 6032 - 43 70 217226 27 chain 152841 chr15 102531392 + 56866857 56868520 L1PA3long 6157 - 31 1695 24248 192 0 1 1471 chain 3626 chr15 102531392 + 56878538 56878578 MER87 546 + 107 147 213218 40 chain 38309 chr15 102531392 + 56903863 56904401 MER41C 542 + 0 542 71698 46 7 8 169 19 22 68 0 2 20 12 10 197 chain 6187 chr15 102531392 + 56926237 56926313 HY3 101 - 1 77 183679 76 chain 8215 chr15 102531392 + 56929951 56930337 Charlie1a 1436 + 177 598 169865 13 6 9 17 2 0 19 72 95 29 4 0 14 143 162 12 4 0 51 chain 128102 chr15 102531392 + 57000788 57002209 L1PA5 6144 + 4715 6137 28543 1111 0 1 310 chain 6351 chr15 102531392 + 57008136 57008208 MER2 342 + 143 215 182363 72 chain 62444 chr15 102531392 + 57014744 57015436 L1PA3long 6157 + 5465 6157 51698 692 chain 10092 chr15 102531392 + 57031131 57031276 LTR54 533 - 132 281 160126 13 1 0 25 0 4 48 4 5 54 chain 15715 chr15 102531392 + 57054187 57054362 L1PA5 6144 + 5969 6144 139224 175 chain 17070 chr15 102531392 + 57068620 57068826 MER41C 542 - 0 206 135405 206 chain 15798 chr15 102531392 + 57072314 57072894 LTR12C 1709 + 773 1436 138961 64 1 0 50 0 1 5 8 7 12 0 2 52 3 44 27 324 365 34 chain 115644 chr15 102531392 + 57080865 57082291 L1PA8 5853 + 4426 5853 32574 212 0 7 365 9 7 11 2 3 533 1 0 115 1 0 8 1 5 7 5 0 41 2 1 19 3 2 91 chain 83623 chr15 102531392 + 57084800 57085955 L1PA16 3655 + 1398 2552 42064 77 5 11 147 5 3 159 1 0 73 1 0 133 9 3 387 0 2 50 37 38 71 chain 6664 chr15 102531392 + 57088712 57088792 MLT1B 390 - 282 362 179957 80 chain 22942 chr15 102531392 + 57102859 57103203 THE1B 368 + 0 368 115899 40 2 17 119 1 0 16 41 51 125 chain 14721 chr15 102531392 + 57141451 57141691 MER30 238 + 0 238 142198 15 16 15 35 4 3 5 0 1 24 0 2 8 8 5 125 chain 29733 chr15 102531392 + 57154161 57154679 L1MA2 4263 + 3621 4099 85717 41 1 0 41 36 0 91 31 28 116 30 37 83 13 6 35 chain 18128 chr15 102531392 + 57189211 57189553 THE1B 368 + 0 342 132523 64 18 14 29 13 14 48 1 0 11 0 1 4 1 0 13 0 3 8 24 27 4 1 0 66 7 6 30 chain 5432 chr15 102531392 + 57189809 57189872 MER53 195 - 108 171 190681 63 chain 70573 chr15 102531392 + 57195448 57196252 L1PA5 6144 - 1626 2436 48041 21 0 1 151 0 4 415 0 1 217 chain 144132 chr15 102531392 + 57196252 57197877 L1PA5 6144 + 4519 6144 25461 1469 1 0 6 0 1 149 chain 7689 chr15 102531392 + 57208084 57208209 MSTD 398 + 0 128 172990 88 19 22 18 chain 6109 chr15 102531392 + 57209530 57209609 MER2 342 + 136 215 184347 79 chain 175218 chr15 102531392 + 57227696 57230899 L1PB1 5432 - 10 2640 21432 18 1 0 13 1 0 21 1 0 24 2 0 15 8 5 18 24 12 15 2 1 23 0 1 16 4 3 16 3 2 25 1 0 26 2 0 9 5 1 12 5 4 6 1 0 19 40 15 58 0 7 7 3 1 13 0 2 181 0 12 200 2 0 113 0 1 61 6 7 234 0 1 25 0 4 136 0 3 46 1 3 128 1 6 5 11 0 18 0 4 56 1 0 4 0 1 31 3 0 7 18 23 77 0 1 36 86 0 78 0 3 22 3 1 15 5 6 14 0 9 205 7 0 19 7 8 202 460 5 157 5 4 10 10 0 40 chain 106906 chr15 102531392 + 57246463 57247754 L1PA6 6164 + 4849 6159 35001 133 1 0 327 4 7 115 1 19 543 2 1 165 chain 14454 chr15 102531392 + 57260871 57261058 MER4A1_ 611 - 1 189 143037 5 1 0 6 0 2 19 1 0 92 0 1 63 chain 9158 chr15 102531392 + 57263699 57263807 MER4D1 891 - 780 888 164776 108 chain 73693 chr15 102531392 + 57287367 57288479 L1PA16 3655 - 1280 2397 46680 26 0 3 27 32 16 70 1 0 67 17 9 71 1 0 70 1 6 5 2 0 45 17 33 124 7 9 88 8 9 6 0 5 298 5 6 124 chain 6163 chr15 102531392 + 57313572 57313640 AluYk11 308 + 4 72 183857 68 chain 65877 chr15 102531392 + 57314279 57315040 L1PA6 6164 - 12 772 50153 8 1 0 317 0 1 233 1 0 201 chain 5148 chr15 102531392 + 57420940 57421466 L1MB7 1623 - 32 486 193557 31 97 73 8 1 0 27 1 0 8 47 26 19 264 239 23 chain 25154 chr15 102531392 + 57452363 57452699 THE1C 375 - 28 375 103995 89 0 1 117 10 14 58 0 2 50 0 4 12 chain 27422 chr15 102531392 + 57456472 57456847 THE1C 375 - 0 375 94899 26 1 0 9 1 0 153 1 2 46 13 14 125 chain 21492 chr15 102531392 + 57500262 57500521 AluSg7 307 - 40 299 122172 135 1 0 26 0 1 97 chain 13078 chr15 102531392 + 57518068 57518217 L1PA4 6152 - 9 157 147926 74 1 0 74 chain 22439 chr15 102531392 + 57531285 57531556 AluSp 311 + 17 289 118303 50 0 1 221 chain 17713 chr15 102531392 + 57556702 57556959 Tigger3b 1229 - 627 875 133670 27 19 9 118 0 1 36 0 1 52 1 0 4 chain 222593 chr15 102531392 + 57561050 57563919 L1P2 5180 - 2356 5178 17727 111 9 6 374 8 0 14 24 0 215 0 1 268 1 0 641 15 12 384 0 15 217 4 3 48 1 0 54 32 13 195 10 9 42 1 0 52 1 0 148 chain 8491 chr15 102531392 + 57570768 57570872 U13 108 - 4 108 168340 104 chain 2775 chr15 102531392 + 57608353 57608400 L1MC1 2226 + 2135 2181 229082 12 6 5 29 chain 7196 chr15 102531392 + 57610910 57611008 MLT1A0 366 + 253 350 176102 85 1 0 12 chain 26106 chr15 102531392 + 57617966 57618396 LTR7B 505 - 10 505 99596 11 7 0 30 14 13 15 0 1 38 0 1 21 1 0 54 1 89 27 37 11 66 0 10 108 chain 3163 chr15 102531392 + 57667465 57667505 MADE1 96 - 54 95 221693 11 0 1 29 chain 7505 chr15 102531392 + 57679150 57679441 L1MB5 1630 - 16 292 174128 13 1 0 49 147 135 17 19 17 45 chain 13449 chr15 102531392 + 57723821 57724044 MER30 238 + 0 236 146532 59 0 1 47 4 0 10 4 23 13 6 0 7 1 7 25 3 0 44 chain 24714 chr15 102531392 + 57776759 57777095 L1PA8 5853 - 0 336 106364 93 1 0 19 2 1 47 7 5 9 1 0 26 0 8 37 2 0 44 1 0 47 chain 27220 chr15 102531392 + 57795814 57796157 THE1A 353 - 12 353 95522 127 2 0 104 1 0 83 0 1 26 chain 3079 chr15 102531392 + 57800977 57801017 MER5A1 166 + 34 71 223358 6 3 0 31 chain 7901 chr15 102531392 + 57806098 57806305 L1MB7 1623 - 332 506 171648 5 1 0 18 2 0 3 2 0 15 41 26 13 5 0 4 1 0 10 5 0 9 6 4 67 chain 5070 chr15 102531392 + 57886816 57886908 Tigger3c 601 + 478 569 194432 50 24 23 18 chain 18616 chr15 102531392 + 57898726 57898936 L1PA3long 6157 + 5948 6157 131172 41 1 0 168 chain 8413 chr15 102531392 + 57946244 57946400 MER57E1 380 - 233 378 168777 34 43 32 79 chain 10045 chr15 102531392 + 57976291 57976420 MLT1A0 366 - 209 339 160351 90 0 1 8 1 0 4 0 1 26 chain 41911 chr15 102531392 + 58012033 58012477 L1HS 6032 - 0 444 66743 444 chain 38434 chr15 102531392 + 58016077 58016629 Tigger1 2417 + 491 1048 71533 35 0 1 8 5 6 58 2 1 155 13 15 92 1 0 94 6 9 83 chain 16736 chr15 102531392 + 58031472 58031694 L1PA8 5853 + 5636 5853 136295 46 1 0 11 2 1 13 1 0 33 2 1 19 1 0 93 chain 512441 chr15 102531392 + 58101352 58107754 L1PA7 6471 - 2 6471 5926 10 3 0 137 0 1 209 4 13 87 0 2 5 4 2 202 0 4 176 1 0 338 0 4 294 1 0 36 1 0 91 3 8 798 1 0 4 0 1 35 0 2 406 0 2 23 0 5 26 0 4 41 6 0 103 0 1 4 0 1 197 0 10 43 0 1 93 10 0 149 8 12 42 7 13 170 1 0 23 8 0 225 6 5 420 2 0 94 0 3 189 0 2 43 0 1 74 8 17 347 0 1 41 0 27 72 0 1 100 0 4 72 3 7 114 3 1 45 0 1 67 9 0 668 chain 25603 chr15 102531392 + 58113552 58113914 THE1B 368 - 0 368 101713 124 27 30 13 0 3 29 1 0 57 0 1 111 chain 12574 chr15 102531392 + 58115100 58115301 MER2 342 + 146 342 149943 69 14 8 72 6 7 40 chain 6660 chr15 102531392 + 58129234 58129309 L1PA2 6032 + 5957 6032 179998 75 chain 23593 chr15 102531392 + 58139387 58139665 AluY 311 + 23 302 112615 109 0 1 169 chain 6148 chr15 102531392 + 58160468 58160651 LTR12_ 688 - 148 231 184002 31 100 0 52 chain 41520 chr15 102531392 + 58188892 58189439 MLT2A2 560 - 0 560 67258 69 1 2 76 4 15 221 7 9 117 1 0 51 chain 241328 chr15 102531392 + 58191458 58194422 L1PA7 6471 - 5 2985 16703 8 0 2 136 6 0 13 3 0 80 0 3 455 0 10 141 1 0 679 0 3 120 3 4 556 0 1 253 4 1 57 3 7 101 1 0 230 7 6 9 0 1 11 3 6 20 0 4 26 3 1 17 0 2 5 3 2 10 chain 213264 chr15 102531392 + 58220149 58222728 L1PA7 6471 - 10 2606 18277 329 0 1 456 1 2 56 0 3 635 0 1 152 0 1 15 0 2 86 0 3 94 1 0 17 0 2 118 7 11 198 1 3 7 1 0 169 1 0 235 chain 115171 chr15 102531392 + 58227835 58229612 L1PREC2 3366 - 372 2048 32724 23 22 8 11 3 0 30 2 0 16 6 1 17 32 24 10 12 0 4 1 0 43 2 1 54 2 0 160 0 1 107 2 1 147 29 1 84 1 2 67 2 0 421 11 1 182 16 4 10 2 3 4 1 0 41 6 0 66 17 19 29 1 0 47 3 6 31 chain 211876 chr15 102531392 + 58268488 58273372 L1PA7 6471 - 6 2963 18368 6 3 0 34 13 23 84 0 10 100 0 2 309 2 4 193 13 21 49 0 3 184 0 9 199 0 32 7 2 1 82 2 0 246 7 21 27 1 2 7 0 2 128 1 5 44 0 1 314 0 5 33 2 4 89 0 2 74 2138 0 31 0 38 208 3 0 88 0 71 127 0 4 34 chain 60961 chr15 102531392 + 58290179 58290977 L1PA10 4194 + 3371 4161 52350 41 8 6 26 1 0 141 7 5 272 1 0 244 1 3 7 3 0 34 1 0 11 chain 17203 chr15 102531392 + 58298623 58298960 L1PB2 3958 - 155 480 135031 24 6 5 21 2 0 37 1 2 9 2 0 24 1 0 64 1 0 12 1 0 6 2 0 17 1 2 32 0 2 8 1 0 6 36 31 23 chain 2233 chr15 102531392 + 58310272 58310794 L1MC4a 1092 + 100 597 236184 22 472 447 28 chain 443001 chr15 102531392 + 58318598 58324703 L1PA4 6152 + 10 6141 8953 132 31 45 34 1 0 187 25 25 37 3 0 10 13 14 27 10 11 56 6 5 22 8 3 87 15 14 8 0 2 4 1 0 142 0 9 75 25 0 76 12 7 132 22 13 12 26 26 11 0 3 5 2 0 87 0 4 8 89 85 252 5 4 346 1 0 170 0 2 116 2 0 25 0 2 275 29 34 168 1 2 346 15 7 81 0 5 14 0 10 206 0 4 17 0 2 46 14 7 698 0 5 76 0 4 286 0 5 89 0 12 363 0 1 170 1 5 21 0 4 18 5 7 808 chain 9377 chr15 102531392 + 58333936 58334095 MER44A 345 - 13 162 163674 58 23 13 13 1 0 40 0 1 24 chain 65842 chr15 102531392 + 58337206 58338038 L1PA7 6471 + 5572 6469 50170 49 1 0 98 0 3 602 11 74 71 chain 15796 chr15 102531392 + 58368410 58368625 MER2 342 - 13 232 138964 28 3 7 184 chain 44675 chr15 102531392 + 58372887 58373427 MER41A 554 - 1 541 63407 540 chain 5756 chr15 102531392 + 58393257 58393328 L1PA16 3655 + 3506 3578 187586 19 0 1 52 chain 559710 chr15 102531392 + 58417930 58423960 L1PA2 6032 + 0 6032 371 219 0 1 5666 0 1 145 chain 520283 chr15 102531392 + 58485567 58491749 L1PA5 6144 + 0 6144 5126 478 40 1 242 44 43 398 16 7 842 0 1 6 1 0 361 0 4 1126 2 1 413 1 0 829 3 9 358 0 1 101 0 1 72 1 0 627 0 2 221 chain 267701 chr15 102531392 + 58499545 58502794 HERVL-int 5654 + 0 5654 15310 175 0 1438 106 0 1 174 1 1 275 0 1 784 0 2 214 0 2 282 0 1 178 1 960 624 0 1 121 2 0 24 0 3 92 1 0 195 chain 27270 chr15 102531392 + 58502794 58503724 MLT2A1 477 + 0 470 95373 126 2 3 42 11 9 24 0 1 144 533 77 11 9 5 28 chain 3762 chr15 102531392 + 58503519 58503560 MLT2A2 560 - 0 41 210939 41 chain 3382 chr15 102531392 + 58513156 58513196 L1PA16 3655 - 2263 2303 217439 40 chain 3250 chr15 102531392 + 58522079 58522138 MER53 195 + 110 168 220003 18 11 10 30 chain 37544 chr15 102531392 + 58529528 58530341 MER9a3 513 + 15 513 72763 85 10 11 191 320 0 115 0 1 16 4 5 15 0 2 57 chain 11383 chr15 102531392 + 58542906 58543065 L1PB 1623 - 135 291 154768 4 1 0 30 2 1 7 1 0 114 chain 5218 chr15 102531392 + 58562213 58562379 LTR41B 718 + 5 177 192846 27 80 87 39 2 1 18 chain 160374 chr15 102531392 + 58607834 58610142 L1PA11 4918 - 289 2558 23290 17 20 14 4 1 0 11 1 0 3 4 0 13 2 0 13 1 0 15 11 9 10 23 13 19 1 0 16 2 0 65 28 27 55 1 0 133 5 10 31 0 1 77 3 1 16 0 1 297 0 1 256 0 3 207 20 24 142 8 10 159 0 1 53 1 3 53 0 1 120 8 0 10 22 0 190 0 4 161 chain 16834 chr15 102531392 + 58614271 58614503 MER30 238 - 0 238 136031 31 2 0 14 3 0 70 4 15 108 chain 4092 chr15 102531392 + 58627196 58627355 LTR16B1 483 + 309 471 206058 28 13 12 15 77 81 26 chain 4096 chr15 102531392 + 58630174 58630224 MER2B 336 - 112 162 205994 50 chain 22127 chr15 102531392 + 58632831 58633099 L1PA6 6164 + 5897 6162 119674 252 3 0 13 chain 44606 chr15 102531392 + 58636473 58637064 LTR71B 605 - 0 604 63473 76 1 0 120 1 0 38 7 6 169 0 1 45 8 22 32 0 1 94 chain 53068 chr15 102531392 + 58638856 58639440 L1PA5 6144 - 846 1430 56974 584 chain 74428 chr15 102531392 + 58639440 58640292 L1PA5 6144 + 5288 6144 46303 705 1 3 134 1 3 11 chain 16036 chr15 102531392 + 58644758 58644962 MER41-int 2638 - 2 209 138265 80 0 1 101 1 3 22 chain 525028 chr15 102531392 + 58654819 58661258 L1PA7 6471 + 20 6470 4685 395 1 0 4 0 1 97 7 6 333 2 0 518 12 13 275 0 2 232 0 3 99 2 0 97 7 9 152 0 10 373 1 2 282 0 1 19 2 0 560 6 5 41 3 7 14 0 3 256 15 0 279 8 7 51 6 5 8 1 0 4 2 1 744 23 21 301 1 9 1144 0 2 49 1 4 12 chain 37775 chr15 102531392 + 58715265 58715783 MLT2A2 560 + 0 516 72451 90 12 7 100 0 2 136 1 2 55 0 1 4 7 6 113 chain 30554 chr15 102531392 + 58735884 58736303 LTR7B 505 - 15 505 83331 36 14 13 54 0 1 21 1 0 113 6 68 66 0 10 108 chain 6644 chr15 102531392 + 58747397 58747553 MER58A 224 - 4 159 180140 4 1 0 11 1 0 29 29 30 38 7 0 6 3 10 27 chain 13412 chr15 102531392 + 58772813 58773025 MER30 238 + 0 231 146669 15 28 32 59 5 20 105 chain 53480 chr15 102531392 + 58853365 58854174 MER4D1 891 - 77 891 56697 95 73 53 4 1 0 42 0 1 15 0 7 35 6 7 116 0 2 7 1 0 15 1 0 50 2 0 7 0 2 262 0 17 77 chain 29557 chr15 102531392 + 58912859 58913166 AluYb8 318 - 11 318 86393 307 chain 28946 chr15 102531392 + 58915765 58916178 L1PA8 5853 + 5447 5853 89238 117 1 0 46 2 0 69 1 0 5 19 18 38 2 1 19 1 0 93 chain 23510 chr15 102531392 + 58916201 58916513 AluSc 308 + 0 307 113070 28 1 0 103 4 2 155 2 0 19 chain 21509 chr15 102531392 + 58930580 58930839 AluY 311 + 48 308 122109 77 1 2 181 chain 19665 chr15 102531392 + 58996113 58996353 7SK 245 - 5 245 128207 240 chain 17954 chr15 102531392 + 59052664 59052880 U3 216 - 0 216 132973 216 chain 82283 chr15 102531392 + 59060402 59061364 LTR13A 966 + 0 966 42637 412 0 2 53 4 7 225 11 10 257 chain 23151 chr15 102531392 + 59072343 59072613 AluSp 311 + 22 294 114888 189 0 2 81 chain 24381 chr15 102531392 + 59118424 59118716 AluSp 311 - 8 300 108191 292 chain 3883 chr15 102531392 + 59122572 59122787 Tigger4a 237 - 103 237 209133 38 59 69 18 91 0 9 chain 22251 chr15 102531392 + 59124726 59125015 AluSp 311 - 15 302 119114 12 5 0 76 1 3 146 1 2 48 chain 82989 chr15 102531392 + 59125540 59126495 LTR5_Hs 974 - 0 974 42342 104 2 0 90 0 19 693 1 0 18 0 3 47 chain 5220 chr15 102531392 + 59195631 59195716 MER5A 189 - 0 103 192827 50 5 0 12 1 24 17 chain 13520 chr15 102531392 + 59195743 59195891 L1PA4 6152 + 5998 6146 146281 148 chain 67372 chr15 102531392 + 59232625 59233657 L1PB1 5432 + 4405 5424 49498 223 3 0 62 0 1 113 6 15 155 0 3 104 0 4 16 21 19 18 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 19 17 33 23 26 15 9 0 14 10 7 14 2 0 27 1 0 19 1 0 10 1 0 18 1 0 4 chain 4960 chr15 102531392 + 59250764 59250951 MER8 282 + 0 235 195582 40 66 0 11 37 151 33 chain 3804 chr15 102531392 + 59277893 59277945 MER33 330 - 122 177 210324 28 0 3 24 chain 22688 chr15 102531392 + 59287664 59287947 AluSg7 307 - 15 292 117131 12 0 2 15 1 0 136 0 1 59 8 0 52 chain 2952 chr15 102531392 + 59289459 59289614 Charlie1a 1436 + 1 143 226058 20 108 95 27 chain 9041 chr15 102531392 + 59313138 59313336 L1PB1 5432 - 10 194 165374 18 1 0 12 1 0 22 1 0 24 25 20 17 21 16 11 2 1 43 chain 9836 chr15 102531392 + 59320549 59320720 MER44A 345 - 39 236 161413 23 11 30 72 14 21 51 chain 16804 chr15 102531392 + 59327484 59327684 THE1B-int 1605 - 18 222 136107 167 0 4 33 chain 468817 chr15 102531392 + 59417752 59423572 L1PA7 6471 - 1 5845 8078 12 4 9 819 0 3 184 0 1 153 35 31 580 10 16 450 0 2 374 0 1 285 5 4 43 2 0 17 3 2 380 0 4 261 4 0 128 0 5 65 9 0 227 0 4 245 0 7 270 1 0 195 9 13 184 0 3 110 3 1 161 4 8 453 3 0 6 0 2 126 chain 12121 chr15 102531392 + 59433487 59433692 MER2 342 - 20 231 151728 20 53 59 132 chain 23906 chr15 102531392 + 59434028 59434318 AluY 311 + 11 295 110873 11 7 0 110 0 1 162 chain 11732 chr15 102531392 + 59547805 59548027 MER30 238 - 8 238 153334 31 3 0 70 4 22 49 50 43 15 chain 4594 chr15 102531392 + 59551089 59551139 MER57B2 428 - 378 428 199708 50 chain 3298 chr15 102531392 + 59552108 59552144 MIRc 230 + 97 133 219006 36 chain 4386 chr15 102531392 + 59607795 59607844 MIR 256 + 85 134 202124 49 chain 6544 chr15 102531392 + 59626504 59626649 L1MA3 4352 + 4195 4332 180894 10 0 2 29 4 0 24 2 0 22 12 10 14 9 8 14 1 0 4 chain 33226 chr15 102531392 + 59628801 59629210 L1PA7 6471 - 1 417 78836 131 1 7 57 0 1 220 chain 40015 chr15 102531392 + 59679071 59679615 MER41C 542 - 7 542 69302 108 0 1 109 1 3 264 0 1 8 9 0 16 6 2 23 chain 6529 chr15 102531392 + 59682405 59682514 U13_ 108 + 0 103 181011 44 0 2 6 14 6 45 chain 28795 chr15 102531392 + 59709971 59710309 L1PA5 6144 - 0 337 89915 23 1 0 314 chain 29568 chr15 102531392 + 59712907 59713217 AluYf4 310 - 0 310 86350 310 chain 22645 chr15 102531392 + 59718535 59718816 AluSp 311 + 12 287 117353 45 0 1 61 8 0 54 0 1 113 chain 88666 chr15 102531392 + 59756185 59757464 L1MA5A 2387 - 159 1433 40125 10 3 0 31 1 0 32 2 0 47 41 39 13 0 1 22 1 0 45 1 0 261 0 1 76 19 18 61 13 16 73 5 4 83 0 1 240 5 7 7 1 0 186 chain 432456 chr15 102531392 + 59757900 59763014 L1PA6 6164 - 5 6164 9250 5 2 0 260 13 0 193 0 18 12 15 0 610 0 1 21 1 0 569 1 0 272 1 0 4 0 1 130 0 1 43 1 0 277 8 9 504 10 6 280 0 4 605 4 0 433 0 10 23 2 0 163 0 1 91 0 4 487 0 1048 74 chain 121686 chr15 102531392 + 59781537 59783868 L1MA3 4352 + 2509 4305 30487 64 12 11 141 18 17 10 6 7 22 0 1 284 1 0 25 207 0 172 28 50 68 1 0 79 2 0 57 317 0 173 5 6 164 1 2 24 1 2 75 5 0 130 48 26 60 1 0 9 1 2 4 1 0 65 2 0 23 1 0 6 1 0 17 chain 6247 chr15 102531392 + 59790378 59790508 L1MB7 1623 - 1365 1499 183185 43 40 44 47 chain 21935 chr15 102531392 + 59794383 59794641 L1PA3long 6157 - 0 260 120480 140 7 0 8 0 9 103 chain 11487 chr15 102531392 + 59812187 59812382 MER30 238 + 0 186 154345 107 4 0 11 6 22 31 1 0 3 20 0 12 chain 26301 chr15 102531392 + 59818707 59819071 THE1B 368 + 0 368 98826 169 1 0 21 17 24 16 1 0 9 4 3 126 chain 10891 chr15 102531392 + 59821398 59821575 LTR8 732 + 16 212 156617 16 9 18 98 16 26 38 chain 40141 chr15 102531392 + 59826886 59827358 LTR7Y 441 - 0 441 69125 276 31 0 165 chain 5393 chr15 102531392 + 59832219 59832889 L1MB8 1703 + 1221 1521 191054 24 173 121 32 6 7 18 384 65 33 chain 9525 chr15 102531392 + 59844044 59844177 MER85 139 - 0 134 162955 34 8 9 91 chain 43371 chr15 102531392 + 59871483 59871989 L1PA7 6471 - 2 508 64970 159 1 0 299 0 1 47 chain 5301 chr15 102531392 + 59879169 59879246 LTR48B 642 - 515 604 192013 29 5 17 43 chain 11759 chr15 102531392 + 59889220 59889507 L1PB1 5432 - 9 270 153224 5 1 0 14 1 0 12 1 0 22 1 0 22 73 56 12 2 1 42 1 0 16 2 1 52 2 0 6 chain 43329 chr15 102531392 + 59894868 59895420 MER41A 554 - 0 554 65001 291 0 2 261 chain 17045 chr15 102531392 + 59895812 59896154 THE1B 368 + 0 368 135478 43 13 29 28 48 46 5 0 2 45 1 0 4 31 42 124 chain 57517 chr15 102531392 + 59901178 59901955 MER4E1 777 + 0 777 54226 23 0 2 50 5 7 111 1 0 15 1 0 106 10 14 42 1 4 162 3 1 5 9 0 8 0 1 35 0 1 190 chain 42672 chr15 102531392 + 59906509 59907062 MER41A 554 - 0 554 65811 80 0 5 77 2 0 261 12 10 121 chain 7434 chr15 102531392 + 59920999 59921122 Tigger1 2417 - 580 738 174553 44 9 10 13 3 37 54 chain 3122 chr15 102531392 + 59948078 59948529 L2a 937 + 302 750 222510 36 392 389 23 chain 22630 chr15 102531392 + 59950077 59950377 AluSq2 311 + 0 307 117425 24 0 1 64 5 9 25 0 2 182 chain 24117 chr15 102531392 + 59974256 59974538 AluSx4 309 + 11 293 109653 282 chain 12641 chr15 102531392 + 60001096 60001263 LTR71B 605 + 0 181 149677 123 5 19 39 chain 23311 chr15 102531392 + 60029517 60029813 AluSp 311 + 0 294 114150 52 7 5 237 chain 3485 chr15 102531392 + 60046517 60046559 MSTC 436 - 377 420 215587 5 0 1 37 chain 45159 chr15 102531392 + 60072553 60073332 L1PB1 5432 - 8 773 62864 4 1 0 16 1 0 13 1 0 21 1 0 24 73 50 15 1 0 16 0 1 12 9 16 15 2 1 53 59 64 398 0 2 44 chain 64043 chr15 102531392 + 60077030 60077933 L1PB 1623 + 630 1512 50992 514 28 24 128 2 1 11 7 0 132 16 14 30 1 0 5 3 0 12 4 1 10 chain 66990 chr15 102531392 + 60078632 60079508 L1PBa1 4058 - 3150 4048 49656 259 4 31 62 0 1 4 1 0 36 3 5 78 3 1 328 1 0 47 11 8 11 1 0 27 chain 16916 chr15 102531392 + 60081902 60082117 THE1B-int 1605 + 1389 1605 135808 62 0 1 153 chain 2956 chr15 102531392 + 60084067 60084101 MER52A 1651 - 833 867 225966 34 chain 534421 chr15 102531392 + 60095601 60101683 L1PA4 6152 + 51 6138 3663 11 2 0 586 0 1 169 18 18 118 0 2 107 0 2 2750 1 0 533 0 4 257 1 0 1289 1 0 110 5 6 124 chain 3070 chr15 102531392 + 60102784 60102819 MER94 134 - 10 45 223567 35 chain 41549 chr15 102531392 + 60117624 60118077 L1PA3long 6157 + 5702 6155 67225 453 chain 3512 chr15 102531392 + 60149492 60149535 L1MC4 1079 + 57 99 215179 12 1 0 30 chain 75177 chr15 102531392 + 60179630 60180594 L1PA8 5853 + 4919 5853 45939 46 1 2 39 1 0 3 6 0 532 22 5 16 1 0 46 2 0 72 1 0 13 1 0 47 2 1 19 1 0 93 chain 182269 chr15 102531392 + 60203129 60205187 L1PA5 6144 + 4076 6143 20760 260 0 8 184 0 1 99 1 0 326 0 1 1188 chain 23422 chr15 102531392 + 60219154 60219518 L1PA8 5853 + 5489 5853 113525 17 10 9 33 0 1 13 1 0 47 2 0 57 1 0 9 0 1 6 1 0 10 10 9 26 8 14 19 1 0 93 chain 18025 chr15 102531392 + 60220077 60220293 AluSc8 310 + 82 301 132791 44 0 3 172 chain 5454 chr15 102531392 + 60224189 60224259 MER5A1 166 + 8 78 190484 70 chain 7475 chr15 102531392 + 60281881 60282035 Charlie1b 519 - 178 325 174310 18 21 18 20 23 19 72 chain 5388 chr15 102531392 + 60312233 60312302 MER58B 340 + 118 187 191111 69 chain 5746 chr15 102531392 + 60328874 60328946 Tigger3b 1229 + 886 958 187680 72 chain 25809 chr15 102531392 + 60381343 60381616 AluYa5 310 + 35 308 100832 273 chain 3600 chr15 102531392 + 60456021 60456109 ORSL 269 + 158 246 213640 26 35 35 27 chain 34534 chr15 102531392 + 60456125 60456689 L1MA3 4352 + 3768 4308 76856 285 82 60 92 0 2 25 6 3 25 2 0 20 1 3 5 1 0 20 chain 79360 chr15 102531392 + 60465384 60466297 L1PA5 6144 + 5218 6138 43881 77 0 7 836 chain 14448 chr15 102531392 + 60480676 60480858 L1PA5 6144 + 5817 6002 143049 39 1 4 142 chain 12528 chr15 102531392 + 60480859 60480999 L1PA5 6144 + 6002 6142 150123 140 chain 11736 chr15 102531392 + 60482622 60482754 L1PA4 6152 + 6020 6152 153317 132 chain 36569 chr15 102531392 + 60505060 60505536 L1PA8 5853 + 5371 5853 74141 103 0 1 45 0 1 27 0 4 12 1 0 45 2 0 73 1 6 52 2 1 19 1 0 93 chain 33493 chr15 102531392 + 60506240 60506722 MER1A 529 - 0 529 78421 10 0 1 43 11 14 5 3 0 51 14 8 82 0 1 175 6 57 82 chain 495506 chr15 102531392 + 60529375 60535506 L1PA6 6164 + 0 6161 7100 246 1 0 4 0 1 34 0 2 159 12 4 119 1 0 11 2 0 50 19 23 134 0 17 226 0 1 88 0 1 608 1 0 128 1 6 156 0 6 6 11 5 295 2 1 370 0 1 45 2 1 21 0 6 321 0 4 91 12 0 32 8 1 16 10 14 26 0 2 56 0 1 168 0 4 19 1 0 422 0 1 374 1 2 986 0 5 76 0 2 25 1 4 734 chain 16048 chr15 102531392 + 60547240 60547441 L1PA7 6471 + 6259 6459 138218 62 1 0 138 chain 207010 chr15 102531392 + 60560820 60563555 L1PBa 3878 - 132 2876 18716 6 0 5 19 2 1 495 8 5 164 5 8 40 0 4 235 0 4 52 0 1 44 1 0 552 0 4 270 5 6 68 4 5 136 5 0 8 8 0 86 3 4 247 5 8 267 chain 27818 chr15 102531392 + 60565870 60566222 MLT2A2 560 - 213 560 93639 175 8 3 169 chain 4206 chr15 102531392 + 60568909 60569004 L1PB1 5432 + 5337 5427 204459 9 2 0 24 1 0 17 18 17 19 1 0 4 chain 26316 chr15 102531392 + 60586412 60586744 THE1A 353 - 20 353 98761 223 1 0 9 0 1 62 0 1 37 chain 122304 chr15 102531392 + 60586750 60588306 THE1A-int 1579 - 7 1562 30280 260 1 0 4 6 7 430 2 3 61 3 0 254 2 0 72 17 18 14 1 0 26 1 0 126 13 15 209 0 1 14 5 6 35 chain 84277 chr15 102531392 + 60593709 60594638 L1PA3long 6157 - 0 933 41789 849 0 4 80 chain 34501 chr15 102531392 + 60597008 60597448 MLT2A1 477 - 7 470 76905 41 8 33 4 0 1 184 1 0 7 0 1 28 3 0 164 chain 29732 chr15 102531392 + 60603620 60603988 L1PA6 6164 + 5795 6156 85719 19 7 0 342 chain 8487 chr15 102531392 + 60606169 60606315 MSTA 426 + 45 187 168364 72 18 0 9 10 24 37 chain 348472 chr15 102531392 + 60623799 60628000 L1PA6 6164 + 1835 6147 11652 356 0 2 67 2 1 284 0 3 222 0 24 375 1 3 13 2 0 37 0 1 393 0 27 44 0 7 776 2 1 1287 98 147 242 chain 5088 chr15 102531392 + 60627668 60627731 L1PA6 6164 - 263 326 194197 63 chain 169190 chr15 102531392 + 60658075 60660504 SVA_E 1901 + 0 1879 22154 153 1 0 327 0 40 297 1 0 26 1 0 80 320 0 111 269 0 233 0 1 4 0 1 606 chain 9631 chr15 102531392 + 60658969 60659178 SVA_E 1901 + 927 1141 74538 39 8 13 162 chain 5191 chr15 102531392 + 60659178 60659235 SVA_E 1901 + 966 1024 155082 42 0 1 15 chain 3423 chr15 102531392 + 60659235 60659281 SVA_E 1901 + 926 972 141226 46 chain 5177 chr15 102531392 + 60659416 60659472 SVA_E 1901 + 959 1015 138649 56 chain 8710 chr15 102531392 + 60659472 60659661 SVA_E 1901 + 1141 1287 74538 93 39 0 27 4 0 26 chain 2126 chr15 102531392 + 60659565 60659588 SVA_E 1901 + 1107 1130 138649 23 chain 4538 chr15 102531392 + 60684510 60684582 MADE1 96 + 0 96 200356 16 5 30 33 1 0 17 chain 3583 chr15 102531392 + 60694195 60694237 MLT1G1-int 1178 - 635 677 213950 42 chain 10454 chr15 102531392 + 60696497 60696615 AluSp 311 + 180 296 158474 93 2 0 23 chain 10253 chr15 102531392 + 60708693 60709059 MSTD 398 - 0 398 159359 68 6 7 12 202 236 52 3 0 23 chain 17350 chr15 102531392 + 60746900 60747149 L1PA8 5853 - 0 245 134659 92 2 1 19 7 6 47 1 0 6 1 0 74 chain 24466 chr15 102531392 + 60779927 60780215 AluSp 311 + 9 298 107729 82 0 3 142 3 1 61 chain 10072 chr15 102531392 + 60811141 60811367 MER44A 345 + 90 345 160212 11 0 2 9 11 0 53 1 4 8 0 1 56 4 0 7 28 44 13 9 31 16 chain 6239 chr15 102531392 + 60855075 60855171 LTR23 429 + 215 310 183257 57 8 7 31 chain 24630 chr15 102531392 + 60985013 60985336 L1P3 4156 + 3820 4139 106827 10 1 0 277 2 0 5 2 1 26 chain 4902 chr15 102531392 + 61008228 61008326 MER5A1 166 - 1 98 196259 32 27 26 39 chain 58952 chr15 102531392 + 61047192 61047841 L1PA4 6152 - 9 657 53429 4 1 0 644 chain 17708 chr15 102531392 + 61064268 61064481 L1PA6 6164 - 9 221 133680 152 1 0 60 chain 47768 chr15 102531392 + 61099105 61099857 L1PB 1623 + 884 1586 60643 413 28 13 44 0 1 91 1 0 7 2 1 30 1 0 3 3 0 14 5 1 13 1 0 9 53 30 21 2 0 11 chain 15388 chr15 102531392 + 61100975 61101361 L1PB1 5432 + 5107 5423 140238 7 13 0 32 1 0 6 38 7 9 2 0 52 2 1 10 7 6 45 1 0 14 26 15 15 13 10 10 2 0 24 1 0 21 1 0 13 2 1 13 1 0 5 chain 8487 chr15 102531392 + 61108832 61108935 L1PA4 6152 + 5815 6143 168367 12 0 225 91 chain 9300 chr15 102531392 + 61109390 61109528 Tigger1a_Art 216 - 24 165 164065 8 1 0 27 6 10 96 chain 24096 chr15 102531392 + 61170256 61170570 AluY 311 + 8 310 109758 21 0 5 92 17 0 184 chain 4443 chr15 102531392 + 61226847 61226922 MER5A 189 - 114 189 201415 40 10 11 4 1 0 20 chain 3292 chr15 102531392 + 61227158 61227251 MIR 256 - 32 127 219137 20 19 18 12 15 18 27 chain 130666 chr15 102531392 + 61238436 61239907 SVA_C 1631 + 0 1631 27929 23 0 3 693 0 80 53 4 0 12 1 0 47 1 0 44 2 0 18 0 85 573 chain 413400 chr15 102531392 + 61242165 61246653 L1PA2 6032 + 1542 6031 9715 2971 0 1 1517 chain 20929 chr15 102531392 + 61337273 61337572 THE1B 368 + 0 307 124179 168 2 1 19 5 12 14 0 4 14 1 0 7 5 4 64 chain 2953 chr15 102531392 + 61479835 61479902 X6B_LINE 212 + 135 203 226036 31 17 18 19 chain 89016 chr15 102531392 + 61534795 61535852 MER11C 1089 - 35 1089 39995 61 0 1 210 0 8 600 12 0 174 chain 77529 chr15 102531392 + 61547589 61548455 L1PA4 6152 - 1 873 44726 14 0 6 748 1 0 88 0 1 15 chain 112067 chr15 102531392 + 61550757 61552972 L1P2 5180 - 1781 3112 33644 685 0 5 9 13 8 548 884 0 76 chain 76202 chr15 102531392 + 61552045 61552896 L1PA3long 6157 - 6 855 45313 721 1 0 52 1 0 76 chain 35923 chr15 102531392 + 61552972 61553368 L1PA3long 6157 + 5745 6149 74987 211 0 8 185 chain 29859 chr15 102531392 + 61573141 61573703 L1PREC2 3366 - 403 940 85248 11 4 1 18 81 66 13 3 0 4 1 0 44 14 13 25 27 25 19 1 0 4 0 1 293 chain 25012 chr15 102531392 + 61583210 61583511 AluY 311 + 0 297 104724 126 4 0 103 1 0 31 0 1 36 chain 23240 chr15 102531392 + 61612472 61612821 THE1B 368 - 0 368 114494 49 5 13 97 11 9 19 4 3 10 1 0 102 7 22 44 chain 18775 chr15 102531392 + 61637347 61637569 L1PA6 6164 - 2229 2451 129032 222 chain 187645 chr15 102531392 + 61637569 61639762 L1PA6 6164 + 3939 6162 20276 186 0 1 167 0 1 788 0 6 11 6 0 243 0 1 228 0 26 471 0 1 93 chain 3507 chr15 102531392 + 61641545 61641607 MER5A1 166 + 83 146 215256 34 10 11 18 chain 486141 chr15 102531392 + 61651405 61657664 L1PA8A 6298 - 7 6258 7517 536 0 11 253 0 3 19 0 9 370 0 3 262 1 0 177 0 1 11 5 8 6 0 1 167 0 4 156 0 1 421 1 2 425 0 1 30 0 4 7 3 5 32 2 0 342 1 0 447 0 4 46 0 1 21 1 3 112 0 4 115 0 1 504 0 3 51 0 1 81 1 4 177 11 8 5 0 3 225 0 2 69 30 26 58 0 1 426 1 0 25 6 5 85 1 0 76 4 2 11 1 0 14 2 0 81 15 0 18 1 0 43 2 0 8 90 60 8 0 16 4 1 0 10 4 3 8 2 1 19 19 10 21 3 0 15 26 16 11 1 0 16 chain 26510 chr15 102531392 + 61697319 61697612 L1PA4 6152 + 5859 6152 98009 293 chain 28383 chr15 102531392 + 61728044 61728366 L1PA7 6471 - 9 331 91649 322 chain 3119 chr15 102531392 + 61768749 61768864 MER5A1 166 - 44 160 222578 26 64 65 25 chain 29471 chr15 102531392 + 61776164 61776476 AluYb8 318 - 6 318 86751 312 chain 17887 chr15 102531392 + 61851961 61852200 Tigger2 2703 + 2288 2529 133148 25 9 7 192 0 4 13 chain 41435 chr15 102531392 + 61853810 61854377 L1PA8 5853 - 6 570 67371 34 0 4 49 1 0 19 2 1 41 6 0 6 1 6 8 2 1 68 2 0 48 1 0 279 chain 39444 chr15 102531392 + 61864101 61864543 L1P1 4361 - 940 1386 70101 167 0 4 275 chain 112933 chr15 102531392 + 61877594 61878971 L1PA7 6471 + 5073 6459 33392 112 1 0 407 7 11 18 7 10 162 0 1 5 1 0 499 11 14 147 chain 2909 chr15 102531392 + 61880923 61880962 MSTA 426 - 28 74 226888 16 0 7 23 chain 13784 chr15 102531392 + 61880962 61881123 L1PA8A 6298 + 6129 6291 145325 56 0 1 105 chain 4755 chr15 102531392 + 61883002 61883061 L1MB3 1562 + 1360 1419 197848 59 chain 2407 chr15 102531392 + 61914200 61914351 MIRb 242 - 74 210 234141 15 51 49 19 1 2 4 1 0 12 35 22 13 chain 36547 chr15 102531392 + 61928284 61928848 L1PB3 3668 + 2987 3582 74174 19 0 2 8 0 1 206 17 69 98 4 3 48 0 1 36 19 3 18 1 0 4 1 0 25 3 1 37 7 3 13 chain 10356 chr15 102531392 + 61964760 61964870 AluYb8 318 + 208 318 158877 110 chain 28548 chr15 102531392 + 61980938 61981238 AluYa5 310 - 10 310 90973 300 chain 32191 chr15 102531392 + 61987107 61987494 THE1A-int 1579 + 1182 1574 80541 67 0 3 118 0 6 137 4 0 61 chain 24924 chr15 102531392 + 61987499 61987807 THE1A 353 + 0 307 105196 110 1 0 197 chain 17104 chr15 102531392 + 62003724 62004063 L1PB1 5432 + 5120 5427 135300 18 1 0 9 28 21 52 2 1 16 1 0 43 1 0 16 23 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 27928 chr15 102531392 + 62067862 62068224 L1PA16 3655 + 3223 3584 93252 67 1 0 109 0 3 176 3 0 6 chain 5760 chr15 102531392 + 62161997 62162068 MER5A 189 + 56 128 187543 67 0 1 4 chain 11520 chr15 102531392 + 62187871 62188092 L1MA5A 2387 + 2110 2295 154219 42 9 7 28 2 0 28 4 1 14 27 0 17 2 0 48 chain 6301 chr15 102531392 + 62188342 62188422 L1MA4 2864 + 195 275 182789 18 1 0 4 0 1 57 chain 539404 chr15 102531392 + 62188438 62194465 L1PA3long 6157 + 0 6152 2912 153 0 1 622 0 128 2440 16 8 1002 0 4 949 1 0 707 0 1 137 chain 26311 chr15 102531392 + 62202039 62202331 L1PA5 6144 + 5847 6139 98782 292 chain 24050 chr15 102531392 + 62204853 62205116 L1PA3long 6157 - 10 273 110043 263 chain 28457 chr15 102531392 + 62216060 62216365 AluYa5 310 - 7 310 91345 185 1 0 103 1 0 15 chain 55716 chr15 102531392 + 62219774 62220402 L1PA4 6152 + 5522 6152 55293 255 0 2 373 chain 44910 chr15 102531392 + 62245440 62245940 L1PA3long 6157 - 0 501 63163 272 0 1 228 chain 3155 chr15 102531392 + 62261353 62261395 MIR 256 + 173 215 221828 42 chain 375385 chr15 102531392 + 62293720 62297882 L1PA3long 6157 - 0 4168 10903 147 0 1 1411 0 1 2201 0 4 403 chain 72878 chr15 102531392 + 62298304 62299104 L1PA4 6152 - 0 800 47080 800 chain 42396 chr15 102531392 + 62307679 62308144 L1HS 6032 + 5573 6031 66155 302 7 0 156 chain 316116 chr15 102531392 + 62308478 62312033 L1PA5 6144 - 6 3548 12758 785 17 0 52 0 4 1974 1 0 570 0 1 156 chain 6924 chr15 102531392 + 62313136 62313291 L1PB4 2604 + 2387 2536 178003 26 22 14 47 29 31 31 chain 70244 chr15 102531392 + 62331669 62332704 L1MA3 4352 + 3339 4352 48294 150 1 3 529 0 1 68 43 31 81 0 2 6 1 0 26 12 7 10 8 6 23 8 6 29 1 0 11 1 0 5 5 2 17 chain 12387 chr15 102531392 + 62334976 62335120 L1PA5 6144 + 5995 6139 150681 144 chain 3690 chr15 102531392 + 62337445 62337516 MADE1 96 + 8 96 212081 12 9 25 25 1 2 24 chain 180663 chr15 102531392 + 62340306 62342335 L1PA4 6152 - 1 2035 20925 155 1 6 11 3 1 5 1 0 596 1 2 575 1 2 168 0 1 512 chain 19245 chr15 102531392 + 62346671 62346932 L1PA8 5853 + 5594 5853 129396 9 3 0 4 0 1 71 1 0 9 1 0 49 1 4 19 2 1 92 chain 88107 chr15 102531392 + 62348349 62349348 LTR13 1007 + 1 1007 40330 92 0 2 13 1 7 189 1 0 703 chain 93118 chr15 102531392 + 62376272 62377341 MER11C 1089 - 16 1089 38625 495 6 5 47 0 1 204 0 4 317 chain 3355 chr15 102531392 + 62385249 62385329 MLT1N2 510 + 388 468 217988 32 24 25 6 1 0 17 chain 142035 chr15 102531392 + 62391931 62393518 L1PA4 6152 + 4555 6143 25817 609 0 1 978 chain 22489 chr15 102531392 + 62407643 62407904 AluSp 311 + 2 264 118067 200 4 5 57 chain 13608 chr15 102531392 + 62409828 62409989 Tigger3a 397 + 139 300 145946 161 chain 116756 chr15 102531392 + 62425570 62426978 L1PA8 5853 - 0 1397 32207 93 1 0 16 1 0 55 1 0 10 1 0 71 2 0 44 1 0 48 0 1 152 2 0 353 2 0 82 1 0 472 chain 14423 chr15 102531392 + 62431139 62431316 LTR54 533 + 0 177 143140 177 chain 18143 chr15 102531392 + 62434132 62434551 MER57B2 428 - 0 428 132490 17 0 1 61 52 54 86 25 11 23 18 0 9 27 67 28 18 16 55 chain 31401 chr15 102531392 + 62435489 62435835 L1PA2 6032 - 1451 1797 81519 346 chain 131564 chr15 102531392 + 62435835 62437281 L1PA2 6032 + 4594 6032 27731 496 0 1 91 0 4 835 13 0 11 chain 14344 chr15 102531392 + 62469604 62469780 L1PA5 6144 + 5969 6144 143401 14 2 1 160 chain 17084 chr15 102531392 + 62472615 62472945 L1MA5A 2387 + 2009 2306 135368 24 1 0 22 9 8 46 1 0 6 5 10 32 2 0 30 1 0 28 8 5 10 28 0 65 1 0 11 chain 100698 chr15 102531392 + 62477967 62479325 LTR12C 1709 - 0 1709 36582 84 24 23 44 2 1 15 0 102 71 3 0 141 0 4 106 3 251 17 0 40 111 41 0 229 4 6 131 10 9 28 0 1 28 0 1 266 chain 25112 chr15 102531392 + 62487662 62487945 AluY 311 + 19 303 104212 113 0 1 170 chain 3289 chr15 102531392 + 62488758 62488794 U2 167 - 131 167 219179 36 chain 8585 chr15 102531392 + 62492532 62492706 L1PB4 2604 + 2398 2570 167817 81 6 0 6 16 21 25 10 8 5 0 2 6 1 0 18 chain 7175 chr15 102531392 + 62496766 62496917 L1PA17 2846 - 153 305 176239 12 0 3 23 7 6 17 1 0 23 19 23 8 4 0 37 chain 34379 chr15 102531392 + 62501959 62502403 MER9B 498 - 48 498 77095 41 2 5 188 0 3 48 12 13 148 1 0 4 chain 102375 chr15 102531392 + 62507033 62508377 HERVK14-int 1672 - 338 1671 36171 26 4 3 198 5 4 32 2 0 7 1 0 3 1 0 79 1 0 7 0 1 155 1 0 206 3 2 11 7 7 25 1 0 56 4 0 174 5 7 26 2 1 90 1 2 124 2 1 45 0 2 10 1 0 29 chain 25515 chr15 102531392 + 62508910 62509323 LTR14A 344 - 1 344 102162 71 0 1 160 31 0 56 42 4 6 3 0 7 0 1 37 chain 57204 chr15 102531392 + 62511170 62511812 SVA_C 1631 + 979 1622 54402 24 0 1 618 chain 49458 chr15 102531392 + 62561776 62562409 LTR14B 630 - 0 617 59420 83 0 3 514 19 0 17 chain 27617 chr15 102531392 + 62573999 62574351 THE1A 353 - 1 353 94305 30 1 0 105 3 5 10 1 0 202 chain 91087 chr15 102531392 + 62584050 62585158 L1P2 5180 - 1981 3102 39267 16 1 0 40 0 1 100 0 4 103 0 10 140 6 5 381 0 1 79 1 0 241 chain 36888 chr15 102531392 + 62585158 62585618 L1P1 4361 + 3859 4318 73460 137 0 1 151 1 0 157 1 0 13 chain 33543 chr15 102531392 + 62587397 62587842 LTR2 463 - 0 463 78327 75 8 4 73 1 0 120 18 38 95 0 3 55 chain 22717 chr15 102531392 + 62600860 62601142 AluY 311 + 1 301 116996 43 0 16 71 0 2 24 2 0 120 1 3 21 chain 174414 chr15 102531392 + 62602061 62604685 L1MA1 4479 + 1607 4172 21549 66 5 7 12 3 4 210 4 1 131 0 8 36 2 4 100 0 4 74 10 5 122 14 15 216 4 6 42 1 0 9 0 4 88 2 0 25 0 1 7 1 0 154 1 0 27 2 0 80 2 1 95 2 0 16 4 0 73 3 2 11 7 4 46 10 5 71 3 0 32 6 8 245 18 20 21 1 0 24 2 0 9 11 10 68 1 0 20 7 5 8 1 0 64 1 2 4 1 0 18 1 0 4 4 1 71 35 0 55 1 0 28 12 10 23 1 0 12 1 0 6 4 2 13 chain 158599 chr15 102531392 + 62623774 62625548 SVA_D 2077 - 0 2065 23517 640 0 49 168 2 0 39 0 263 876 19 0 30 chain 24488 chr15 102531392 + 62659505 62659786 AluSc5 308 + 18 299 107614 281 chain 30282 chr15 102531392 + 62664110 62664489 MLT2A1 477 + 1 381 83989 168 4 1 9 0 1 21 0 3 177 chain 108447 chr15 102531392 + 62690621 62692177 THE1C-int 1605 + 0 1605 34579 13 3 2 42 5 29 24 0 54 280 10 17 34 5 8 65 0 54 86 0 1 215 95 0 153 0 1 66 25 22 6 0 4 429 chain 26159 chr15 102531392 + 62710755 62711177 LTR7B 505 - 10 505 99372 41 14 13 79 1 0 51 1 89 27 35 11 67 1 11 16 0 1 89 chain 50830 chr15 102531392 + 62712784 62713420 PABL_A 660 + 0 660 58412 24 0 15 12 0 4 29 8 17 373 4 0 186 chain 23398 chr15 102531392 + 62751199 62751488 AluSc 308 - 10 298 113659 167 1 0 121 chain 59752 chr15 102531392 + 62755725 62756769 L1PA6 6164 + 5426 6152 52961 69 321 0 67 0 1 97 1 3 489 chain 71459 chr15 102531392 + 62854758 62855881 L1PB1 5432 - 5 1046 47715 5 2 0 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 15 1 0 45 1 0 15 2 1 50 20 14 9 1 0 13 1 0 20 65 13 290 1 0 101 1 0 5 0 3 69 13 10 6 0 4 96 7 9 122 chain 39722 chr15 102531392 + 62869897 62870352 L1PA6 6164 - 2 457 69726 455 chain 6490 chr15 102531392 + 62923435 62923514 MLT1A1 405 - 307 387 181334 61 0 1 18 chain 23723 chr15 102531392 + 62946677 62946981 AluSz 310 + 7 310 111914 103 10 9 191 chain 17545 chr15 102531392 + 62973061 62973381 L1PB3 3668 - 119 417 134141 20 3 1 24 6 4 18 20 4 58 1 0 25 27 26 118 chain 103132 chr15 102531392 + 62982093 62983251 SVA_D 2077 - 689 2077 35962 48 1 0 5 0 78 23 0 12 136 2 0 44 0 134 300 4 0 27 0 1 371 1 0 174 0 13 22 chain 5111 chr15 102531392 + 63079007 63079087 MADE1 96 + 0 96 193962 20 9 25 51 chain 4899 chr15 102531392 + 63094540 63094593 L1MA2 4263 + 3977 4030 196273 53 chain 40821 chr15 102531392 + 63094700 63095275 L1MA2 4263 - 271 857 68142 27 11 9 150 12 9 135 1 0 70 6 7 106 0 16 57 chain 3310 chr15 102531392 + 63101357 63101416 MER53 195 + 126 187 218768 11 3 0 33 1 6 11 chain 204939 chr15 102531392 + 63151456 63153867 L1PA6 6164 + 3724 6156 18862 332 1 2 37 0 5 267 0 4 941 0 4 692 0 8 35 1 0 105 chain 86619 chr15 102531392 + 63217052 63218010 L1PA3long 6157 + 5192 6150 40917 958 chain 11910 chr15 102531392 + 63237644 63237883 THE1B 368 - 61 301 152556 65 1 0 9 48 53 11 1 0 48 16 14 40 chain 27479 chr15 102531392 + 63246742 63247028 AluYa5 310 - 24 310 94718 286 chain 24004 chr15 102531392 + 63274379 63274667 AluSc 308 - 3 292 110308 178 0 1 110 chain 30576 chr15 102531392 + 63276119 63276550 MER57A1 433 + 0 433 83251 54 8 9 194 25 26 150 chain 18444 chr15 102531392 + 63297999 63298246 L1PA8 5853 - 0 243 131659 93 1 0 19 2 1 52 1 0 9 3 0 6 0 2 61 chain 22943 chr15 102531392 + 63371351 63371640 AluSp 311 + 0 295 115894 71 10 16 208 chain 15638 chr15 102531392 + 63379710 63379885 AluY 311 + 128 303 139472 175 chain 137515 chr15 102531392 + 63390454 63391984 SVA_D 2077 + 15 2069 26559 746 0 40 107 1 0 10 0 36 36 1 2 36 0 448 593 chain 119473 chr15 102531392 + 63393654 63394980 L1PA3long 6157 - 0 1338 31232 12 0 9 920 0 1 206 0 2 188 chain 40326 chr15 102531392 + 63397318 63398009 LTR12_ 688 - 1 688 68843 23 3 5 199 52 53 67 57 75 74 24 0 28 5 4 159 chain 89357 chr15 102531392 + 63415627 63416633 LTR13 1007 - 0 1007 39857 702 1 0 170 2 0 10 0 4 121 chain 21516 chr15 102531392 + 63441519 63441783 AluY 311 + 39 300 122082 87 3 0 174 chain 4923 chr15 102531392 + 63444516 63444617 MER119 576 + 408 535 196009 19 1 0 16 1 30 35 15 13 14 chain 10500 chr15 102531392 + 63464590 63464765 MSTA 426 - 224 426 158247 39 0 4 11 24 48 60 1 0 40 chain 8487 chr15 102531392 + 63476459 63476558 MER1A 529 + 255 354 168369 99 chain 25018 chr15 102531392 + 63501951 63502237 L1PA7 6471 - 1 287 104690 286 chain 43076 chr15 102531392 + 63518894 63519450 MER41A 554 - 0 554 65327 187 9 8 6 1 0 353 chain 102450 chr15 102531392 + 63528821 63530354 L1MA3 4352 - 8 1535 36148 14 6 2 15 1 0 25 1 0 5 5 1 24 2 0 21 2 0 32 0 2 23 1 0 25 11 12 19 47 31 16 1 6 166 0 1 134 89 102 226 0 3 468 1 0 29 0 1 124 chain 23281 chr15 102531392 + 63534601 63534896 AluSc 308 + 10 300 114291 57 4 0 64 1 0 169 chain 4198 chr15 102531392 + 63537796 63537867 MER21B 843 - 159 234 204585 40 14 18 17 chain 10966 chr15 102531392 + 63537877 63538030 Tigger4b 360 - 0 152 156338 53 12 11 88 chain 22624 chr15 102531392 + 63538078 63538371 AluSp 311 - 19 311 117462 159 3 1 37 5 6 89 chain 24053 chr15 102531392 + 63552039 63552321 AluSc 308 - 16 298 110025 282 chain 4111 chr15 102531392 + 63576365 63576413 Tigger3b 1229 - 976 1024 205765 48 chain 24048 chr15 102531392 + 63607815 63608107 AluSc8 310 + 16 309 110057 79 2 1 36 0 3 17 1 0 157 chain 24463 chr15 102531392 + 63620537 63620832 AluSg7 307 - 11 307 107742 164 0 1 131 chain 5807 chr15 102531392 + 63646694 63646771 FLAM_A 137 + 53 126 187076 66 4 0 7 chain 21666 chr15 102531392 + 63685221 63685477 AluSz 310 + 30 286 121518 256 chain 41021 chr15 102531392 + 63687729 63688300 LTR10A 586 - 14 586 67870 63 8 6 165 0 1 54 1 2 61 25 26 194 chain 3308 chr15 102531392 + 63693508 63693573 MLT1H2 457 + 369 433 218818 18 16 15 31 chain 9538 chr15 102531392 + 63712384 63712785 MLT1C 463 + 0 417 162897 24 6 8 73 249 263 49 chain 18975 chr15 102531392 + 63751728 63752260 LTR12C 1709 + 787 1412 130169 31 0 40 14 7 3 178 78 0 25 173 308 26 chain 24706 chr15 102531392 + 63760307 63760594 AluY 311 + 6 294 106396 126 0 1 161 chain 3954 chr15 102531392 + 63762161 63762209 L1MC4 1079 + 830 878 208076 48 chain 2961 chr15 102531392 + 63766977 63767024 MIRb 242 - 163 208 225862 12 4 2 31 chain 23526 chr15 102531392 + 63776484 63776772 AluSp 311 + 0 292 112982 50 0 4 238 chain 12816 chr15 102531392 + 63809242 63809407 L1PA4 6152 - 0 157 148996 9 0 1 98 9 0 49 chain 7697 chr15 102531392 + 63836529 63836648 LTR38B 592 - 12 129 172955 32 8 7 47 1 0 31 chain 8976 chr15 102531392 + 63851249 63851377 MER85 139 - 0 139 165739 28 5 16 95 chain 4162 chr15 102531392 + 63879611 63879678 MER6B 211 - 0 66 205064 44 8 7 15 chain 3159 chr15 102531392 + 63885173 63885247 MER3 215 - 24 126 221752 13 4 13 12 14 33 31 chain 22659 chr15 102531392 + 63894506 63894809 AluY 311 + 8 307 117278 11 2 1 85 1 0 18 7 4 141 0 2 6 2 1 30 chain 452753 chr15 102531392 + 63909210 63914241 L1PA4 6152 - 0 5056 8665 316 1 3 525 0 4 423 0 3 465 0 4 57 0 4 882 0 2 292 0 1 816 0 1 824 0 4 430 chain 6611 chr15 102531392 + 63939093 63939172 L1PB4 2604 + 1956 2035 180366 79 chain 8056 chr15 102531392 + 63969168 63969408 Tigger4a 237 + 25 141 170723 12 103 0 9 21 0 95 chain 17334 chr15 102531392 + 64027544 64027742 L1PA4 6152 + 5942 6140 134697 198 chain 34008 chr15 102531392 + 64035328 64036287 L1M1 2793 - 1449 2132 77604 31 0 1 37 3 0 6 4 1 29 322 19 20 1 3 19 1 0 82 0 2 91 1 0 19 0 2 54 22 45 44 1 0 8 2 0 9 0 4 16 1 0 24 71 76 41 chain 12641 chr15 102531392 + 64043422 64043583 Tigger3a 397 + 142 307 149678 30 0 4 131 chain 3346 chr15 102531392 + 64054881 64054941 L1MC5 759 + 231 284 218109 28 8 1 24 chain 29307 chr15 102531392 + 64081278 64081588 AluYa5 310 - 0 310 87535 310 chain 46072 chr15 102531392 + 64086006 64086546 MER41A 554 + 13 554 61973 142 0 1 398 chain 50242 chr15 102531392 + 64087792 64088379 LTR10C 591 - 0 591 58837 301 1 0 273 0 5 12 chain 3573 chr15 102531392 + 64107587 64107629 MIR 256 + 93 135 214085 42 chain 26620 chr15 102531392 + 64107929 64108295 THE1C 375 - 4 373 97597 131 2 1 49 1 0 12 0 1 38 8 12 125 chain 13565 chr15 102531392 + 64130312 64130621 MER47B 469 + 0 398 146112 17 4 17 14 1 0 73 24 34 6 3 0 6 0 3 19 37 103 45 14 15 46 chain 37193 chr15 102531392 + 64136849 64137267 L1PA5 6144 + 5720 6138 73241 418 chain 122911 chr15 102531392 + 64138597 64140163 THE1A-int 1579 + 0 1579 30075 267 8 7 149 20 22 138 0 1 8 6 15 731 0 1 117 0 1 122 chain 10640 chr15 102531392 + 64140701 64140817 THE1A 353 + 237 353 157655 116 chain 89197 chr15 102531392 + 64143981 64146474 L1PA16 3655 + 1609 3624 39929 29 7 10 15 0 2 6 635 8 77 1 3 24 1 2 9 31 36 95 17 18 50 14 16 4 1 0 256 1 0 76 12 18 42 0 4 35 6 7 40 0 1 5 1 0 178 2 1 64 16 79 45 424 509 42 0 1 152 0 1 9 3 1 13 5 0 4 13 0 7 5 0 21 chain 7798 chr15 102531392 + 64173712 64173804 MER85 139 - 43 135 172317 92 chain 14742 chr15 102531392 + 64240522 64240837 MSTA 426 - 90 426 142130 18 62 70 12 2 0 21 4 0 12 0 2 31 7 11 28 11 24 107 chain 14133 chr15 102531392 + 64245210 64245475 L1PB1 5432 - 14 262 144094 14 1 0 9 0 3 22 1 0 23 29 24 10 9 0 17 2 0 16 1 0 43 1 0 16 2 1 11 0 1 38 chain 33723 chr15 102531392 + 64245489 64247762 L1MA3 4352 - 277 2695 23950 23 2 0 5 0 1 28 4 8 110 0 1 194 7 6 35 0 1 82 8 10 155 35 0 35 1 0 98 0 2 62 8 10 134 0 4 103 0 1 130 11 9 101 6 5 139 3 0 59 8 0 12 20 24 175 3 5 231 0 31 59 60 195 12 8 13 67 0 3 40 chain 526507 chr15 102531392 + 64249566 64255665 L1PA5 6144 - 9 6144 4545 763 0 2 74 0 2 1618 0 1 428 0 4 470 0 4 421 0 1 89 0 2 61 0 2 321 11 12 151 1 0 237 0 1 301 9 0 377 0 3 5 3 0 617 7 33 135 chain 4124 chr15 102531392 + 64255677 64255955 L1MA3 4352 - 4034 4305 23950 138 10 5 19 1 0 56 14 13 40 chain 6731 chr15 102531392 + 64268927 64269015 MER33 330 + 70 157 179464 58 1 0 29 chain 6642 chr15 102531392 + 64300049 64300290 L1MB8 1703 + 1439 1631 180148 77 143 94 21 chain 31333 chr15 102531392 + 64330976 64331421 MER4A1 472 + 0 467 81926 226 31 26 46 0 1 22 0 13 34 0 11 12 9 11 65 chain 22171 chr15 102531392 + 64351616 64351883 AluSg7 307 - 25 293 119491 150 0 1 117 chain 107837 chr15 102531392 + 64352867 64354320 LTR12C 1709 + 0 1708 34770 214 37 5 248 2 0 231 1 42 17 0 2 78 1 0 123 1 158 106 11 4 93 0 2 77 0 102 95 37 28 56 0 2 25 chain 20342 chr15 102531392 + 64361409 64361649 AluSg7 307 - 52 294 126096 123 0 1 86 0 1 31 chain 46255 chr15 102531392 + 64389062 64389664 MER51C 639 - 0 606 61811 101 0 2 175 0 4 106 0 1 39 1 0 87 3 4 9 3 0 78 chain 3716 chr15 102531392 + 64389733 64389773 MER51A 677 - 637 677 211696 40 chain 7861 chr15 102531392 + 64403658 64403767 HY1 111 - 0 110 171926 36 5 6 68 chain 5113 chr15 102531392 + 64405446 64405507 MER20 218 - 4 65 193938 61 chain 24725 chr15 102531392 + 64482613 64482911 AluSp 311 - 14 311 106291 13 2 0 277 0 1 6 chain 58168 chr15 102531392 + 64513915 64514586 L1PA8A 6298 + 5620 6291 53892 627 2 0 4 0 2 38 chain 3947 chr15 102531392 + 64537747 64537838 L1MA4 2864 + 2440 2530 208166 15 5 13 7 6 0 21 6 3 31 chain 58122 chr15 102531392 + 64562982 64564415 L1PREC2 3366 - 2302 3102 53916 174 652 7 255 0 10 149 1 2 61 1 0 58 18 20 64 chain 7869 chr15 102531392 + 64575181 64575346 L1PB1 5432 + 5268 5420 171875 13 1 0 11 21 17 17 4 2 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 10245 chr15 102531392 + 64582620 64582768 L1PB4 2604 + 2427 2574 159394 123 7 6 18 chain 160847 chr15 102531392 + 64604083 64605953 L1PA7 6471 + 4579 6464 23222 73 2 0 5 0 2 5 3 10 139 0 4 168 1 0 636 1 0 79 0 2 21 0 1 85 0 3 652 chain 32785 chr15 102531392 + 64608791 64609240 LTR2 463 + 1 463 79554 349 29 30 31 1 13 39 chain 41832 chr15 102531392 + 64616414 64616964 MLT2A2 560 + 0 560 66849 146 1 2 49 6 7 65 3 0 137 0 11 143 chain 559950 chr15 102531392 + 64618859 64624886 L1PA2 6032 + 0 6032 359 1700 0 1 3481 0 4 846 chain 29798 chr15 102531392 + 64633188 64633503 AluYb8 318 - 3 318 85443 315 chain 16394 chr15 102531392 + 64635211 64635406 AluSp 311 + 82 277 137223 195 chain 2974 chr15 102531392 + 64649096 64649127 MER4D 903 + 791 822 225546 31 chain 28583 chr15 102531392 + 64657192 64657499 AluYb8 318 - 10 317 90810 307 chain 22831 chr15 102531392 + 64666477 64666750 AluY 311 + 19 295 116436 53 0 3 220 chain 24338 chr15 102531392 + 64677562 64677852 AluSp 311 + 20 311 108431 248 0 1 42 chain 23627 chr15 102531392 + 64694424 64694718 AluSp 311 - 15 311 112426 154 5 6 111 0 1 24 chain 3551 chr15 102531392 + 64713841 64713934 Tigger3a 397 + 139 231 214532 20 39 38 34 chain 25466 chr15 102531392 + 64742310 64742616 AluY 311 + 0 311 102369 55 0 4 71 1 2 179 chain 26679 chr15 102531392 + 64773507 64773811 AluSp 311 - 0 304 97388 304 chain 24755 chr15 102531392 + 64830013 64830317 AluSp 311 + 0 294 106139 41 4 0 87 6 0 166 chain 22816 chr15 102531392 + 64830749 64831032 AluSp 311 - 16 300 116503 238 3 4 42 chain 16148 chr15 102531392 + 64835137 64835357 L1PA8 5853 + 5637 5853 137904 41 2 1 11 1 0 45 8 7 18 1 0 93 chain 22222 chr15 102531392 + 64855707 64856002 AluSp 311 + 14 311 119253 53 1 0 51 0 1 6 0 1 6 1 0 113 1 3 63 chain 8178 chr15 102531392 + 64945086 64945186 HY3 101 + 0 100 170074 100 chain 5196 chr15 102531392 + 64963478 64963539 U6 107 + 17 78 193069 61 chain 24893 chr15 102531392 + 65020746 65021065 AluY 311 + 6 310 105390 46 0 5 38 1 0 153 19 0 62 chain 23469 chr15 102531392 + 65043257 65043549 AluSg 306 + 6 295 113273 268 0 1 5 4 0 15 chain 24341 chr15 102531392 + 65056836 65057135 AluY 311 + 4 298 108411 119 2 0 142 3 0 33 chain 20038 chr15 102531392 + 65061390 65061656 AluSp 311 + 11 309 127015 42 3 40 73 1 2 131 6 0 10 chain 17578 chr15 102531392 + 65061658 65061863 AluY 311 + 82 287 134060 36 1 0 14 0 1 154 chain 144146 chr15 102531392 + 65090625 65092291 SVA_D 2077 - 4 2077 25456 200 0 2 110 1 0 219 0 352 105 0 51 42 0 2 36 1 38 138 40 0 740 0 6 19 2 0 13 chain 21388 chr15 102531392 + 65106137 65106404 AluSc5 308 + 38 297 122551 214 8 0 45 chain 10927 chr15 102531392 + 65119265 65120762 MER51A 677 - 16 677 156499 78 1335 499 84 chain 4284 chr15 102531392 + 65126845 65126965 MER3 215 + 47 197 203423 43 56 86 21 chain 23552 chr15 102531392 + 65130084 65130370 AluSg7 307 - 12 297 112839 168 1 2 61 2 0 54 chain 24747 chr15 102531392 + 65135772 65136064 AluSp 311 - 5 297 106189 292 chain 20805 chr15 102531392 + 65142102 65142374 AluSp 311 + 25 297 124581 116 17 17 139 chain 5120 chr15 102531392 + 65215281 65215343 MLT1D 503 + 0 62 193869 62 chain 31126 chr15 102531392 + 65222031 65222456 L1PA8 5853 + 5432 5853 82293 127 2 1 48 2 0 38 1 0 33 1 0 8 4 7 49 1 0 17 1 0 93 chain 24794 chr15 102531392 + 65291502 65291802 AluSp 311 - 0 301 105923 106 1 2 193 chain 3799 chr15 102531392 + 65304696 65304738 L1MB7 1623 - 1021 1063 210399 42 chain 23571 chr15 102531392 + 65316392 65316667 AluSp 311 + 10 286 112733 209 0 1 66 chain 14019 chr15 102531392 + 65327189 65327355 LTR43 600 - 434 600 144508 166 chain 146059 chr15 102531392 + 65367179 65368926 LTR12C 1709 + 0 1709 25157 707 41 0 130 1 0 274 9 6 107 0 4 149 1 0 301 0 4 27 chain 19530 chr15 102531392 + 65412824 65413055 AluY 311 + 60 292 128568 72 0 1 159 chain 23967 chr15 102531392 + 65415063 65415353 AluSq4 311 + 0 295 110534 17 0 4 110 0 1 163 chain 19391 chr15 102531392 + 65418176 65418475 THE1B 368 - 62 368 128971 63 2 1 12 6 5 11 18 24 21 1 0 28 1 5 136 chain 29215 chr15 102531392 + 65419513 65419822 AluYb8 318 + 0 309 87984 309 chain 39838 chr15 102531392 + 65428763 65429266 MER41C 542 + 0 506 69563 49 0 1 4 1 0 260 1 2 76 0 2 112 chain 65071 chr15 102531392 + 65429424 65430280 THE1B-int 1605 - 719 1605 50542 122 9 0 7 4 13 293 5 30 305 0 3 23 0 2 88 chain 27443 chr15 102531392 + 65430280 65430649 THE1B 368 - 0 368 94838 166 2 0 8 0 2 23 1 0 52 8 9 60 0 1 34 2 0 13 chain 4493 chr15 102531392 + 65430700 65430755 MER4A1 472 - 0 55 200873 55 chain 32238 chr15 102531392 + 65431483 65431932 MER83 447 + 0 446 80462 8 0 5 46 0 1 4 1 0 142 8 4 194 16 12 30 chain 29199 chr15 102531392 + 65460764 65461096 L1PA5 6144 + 5812 6144 88056 332 chain 25753 chr15 102531392 + 65485371 65485680 AluY 311 + 7 311 101067 120 3 0 6 2 0 178 chain 75526 chr15 102531392 + 65518879 65519847 LTR5_Hs 974 - 0 974 45758 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 177 0 1 289 chain 11218 chr15 102531392 + 65527340 65527495 L1PA5 6144 + 5984 6144 155355 10 1 7 130 3 2 11 chain 25159 chr15 102531392 + 65536625 65536986 THE1B 368 - 0 366 103961 97 1 2 25 3 2 10 1 0 18 0 4 10 1 0 4 12 16 11 1 0 167 chain 28116 chr15 102531392 + 65545674 65545967 AluYa5 310 - 17 310 92586 293 chain 24317 chr15 102531392 + 65586583 65586883 AluSq2 311 + 4 308 108563 128 0 2 143 1 3 28 chain 5918 chr15 102531392 + 65588388 65588452 U5 65 + 0 64 186005 64 chain 23920 chr15 102531392 + 65588878 65589217 AluY 311 + 3 303 110809 50 50 10 70 1 0 80 0 2 88 chain 8673 chr15 102531392 + 65593044 65593317 LTR12C 1709 - 712 938 167344 18 32 102 40 117 0 66 chain 3292 chr15 102531392 + 65593169 65593211 LTR12C 1709 - 872 914 219149 42 chain 6040 chr15 102531392 + 65597014 65597078 U5 65 + 0 64 184887 64 chain 29790 chr15 102531392 + 65640325 65640714 MER41A 554 + 165 554 85510 23 10 0 7 9 19 340 chain 145039 chr15 102531392 + 65643102 65645493 MER41-int 2638 + 231 2352 25317 17 1 0 5 55 40 118 0 1 40 3 0 6 0 4 24 16 20 23 3 4 10 3 7 128 2 1 36 335 32 60 1 15 186 0 1 77 0 2 174 20 25 35 0 1 32 0 5 11 7 10 151 0 7 336 2 0 36 2 0 120 0 3 192 3 5 121 chain 25574 chr15 102531392 + 65645899 65646230 MER41A 554 + 94 424 101855 25 9 3 94 0 1 188 0 4 15 chain 13937 chr15 102531392 + 65659719 65659876 L1PA3long 6157 + 6001 6157 144800 139 1 0 17 chain 4642 chr15 102531392 + 65698522 65698578 MER113 458 + 255 311 199156 56 chain 21734 chr15 102531392 + 65709936 65710223 AluSz 310 - 20 300 121262 8 7 0 162 2 1 4 0 1 104 chain 29812 chr15 102531392 + 65721557 65721875 AluYb8 318 - 0 318 85400 318 chain 19225 chr15 102531392 + 65734108 65734419 AluY 311 + 0 305 129449 67 7 0 64 54 55 89 0 2 12 2 0 16 chain 6505 chr15 102531392 + 65795091 65795167 HY4 93 + 13 89 181196 76 chain 20521 chr15 102531392 + 65795455 65795733 AluSp 311 - 21 301 125563 17 11 12 86 1 2 163 chain 3591 chr15 102531392 + 65813401 65813453 LTR75 556 + 440 492 213812 7 2 0 5 0 2 38 chain 26341 chr15 102531392 + 65813453 65813753 AluYk4 311 + 0 300 98652 300 chain 12885 chr15 102531392 + 65815392 65815549 THE1B 368 - 0 156 148685 75 1 0 81 chain 25522 chr15 102531392 + 65821874 65822180 AluSp 311 + 0 299 102126 140 0 6 145 13 0 8 chain 60991 chr15 102531392 + 65829152 65830279 Tigger1 2417 + 465 1299 52337 58 0 1 37 0 4 132 7 8 54 0 1 23 0 2 64 1 7 41 1 0 85 0 6 48 0 3 131 316 0 129 chain 35416 chr15 102531392 + 65845035 65845418 L1PA2 6032 - 6 389 75660 383 chain 9654 chr15 102531392 + 65845418 65845525 U6 107 - 0 107 162328 107 chain 123916 chr15 102531392 + 65857114 65858664 THE1A-int 1579 - 9 1579 29727 72 0 5 86 5 6 21 0 1 4 1 0 331 0 1 363 0 32 88 11 0 118 6 8 189 17 7 238 chain 13277 chr15 102531392 + 65874636 65874814 L1MB5 1630 + 356 533 147181 112 2 1 64 chain 27627 chr15 102531392 + 65898311 65898610 AluYf4 310 + 0 300 94277 206 0 1 93 chain 186467 chr15 102531392 + 65908070 65910216 L1PA6 6164 - 2 2147 20383 11 1 0 829 0 4 433 0 2 182 4 0 331 0 2 215 6 2 134 chain 26692 chr15 102531392 + 65949697 65949999 AluYf4 310 + 0 300 97345 123 2 0 177 chain 11723 chr15 102531392 + 65977879 65978049 MER2 342 - 93 319 153370 113 14 70 43 chain 67393 chr15 102531392 + 66008585 66009320 L1PA3long 6157 - 0 735 49489 735 chain 75998 chr15 102531392 + 66025990 66026959 LTR5_Hs 974 + 0 974 45482 169 1 0 119 1 2 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 23735 chr15 102531392 + 66117976 66118456 LTR2B 499 + 0 499 111859 14 1 0 38 48 59 14 8 0 40 0 7 43 6 2 10 0 15 66 0 1 11 28 27 35 35 34 83 chain 31254 chr15 102531392 + 66127869 66128266 MER57B1 401 - 0 401 82074 129 0 3 97 1 2 170 chain 3897 chr15 102531392 + 66161428 66161471 tRNA-Gln-CAG 43 - 0 43 208906 43 chain 25606 chr15 102531392 + 66170739 66171044 AluYk4 311 + 0 305 101699 132 0 4 75 0 1 86 5 0 7 chain 14488 chr15 102531392 + 66185548 66185921 Tigger4 2445 + 2047 2408 142922 27 0 2 25 35 44 61 30 28 26 1 0 8 2 1 15 2 1 17 16 13 5 1 0 40 26 19 15 5 0 3 2 0 11 chain 12773 chr15 102531392 + 66211680 66211893 Tigger1a_Art 216 - 0 216 149165 18 3 6 23 10 14 106 2 1 34 4 1 13 chain 22493 chr15 102531392 + 66226601 66226877 AluSp 311 - 24 300 118054 114 0 1 30 11 10 121 chain 19906 chr15 102531392 + 66269258 66269514 AluY 311 + 24 292 127457 22 0 9 76 1 2 128 6 8 23 chain 4918 chr15 102531392 + 66306577 66306664 MLT1C 463 - 319 400 196075 20 17 11 50 chain 4385 chr15 102531392 + 66318352 66318496 MER5B 177 - 22 162 202140 31 81 77 32 chain 3817 chr15 102531392 + 66324542 66324629 MSTD 398 + 292 378 210129 21 31 30 35 chain 21530 chr15 102531392 + 66325178 66325445 AluY 311 + 41 311 122044 91 0 1 144 1 3 31 chain 4159 chr15 102531392 + 66334032 66334079 MER58A 224 + 168 215 205121 47 chain 6034 chr15 102531392 + 66376407 66376476 Tigger3c 601 - 64 133 184942 69 chain 306406 chr15 102531392 + 66376654 66380706 L1PBa1 4058 + 10 4037 13158 23 19 22 197 0 1 94 5 15 68 2 0 132 9 8 48 14 13 25 35 6 220 1 0 4 1 2 101 3 0 5 1 4 155 0 1 48 28 28 269 0 3 36 0 4 100 0 5 15 1 0 62 0 3 84 1 4 647 4 0 140 0 4 54 0 5 654 0 5 110 8 7 104 25 18 102 2 1 6 1 0 29 1 0 34 2 0 7 2 0 108 3 1 15 1 0 14 7 0 15 2 0 19 14 9 21 1 0 9 2 1 7 0 2 5 1 0 5 1 0 9 1 0 7 0 2 7 1 0 39 chain 2797 chr15 102531392 + 66470991 66471024 MER96 175 + 95 129 228772 5 0 1 28 chain 22076 chr15 102531392 + 66486285 66486659 L1PB1 5432 + 4913 5279 119901 82 3 2 106 15 18 17 2 1 5 1 0 12 2 0 3 2 0 9 2 0 52 20 18 41 chain 27365 chr15 102531392 + 66555191 66555548 THE1B 368 + 0 368 95063 44 6 21 104 1 0 31 2 0 94 1 0 74 chain 11520 chr15 102531392 + 66566895 66567173 L1MB2 1706 + 1428 1694 154215 79 23 25 31 88 72 41 0 2 16 chain 7924 chr15 102531392 + 66658206 66658299 MER41B 635 + 517 610 171491 93 chain 25017 chr15 102531392 + 66677831 66678124 AluSg7 307 - 13 307 104700 184 1 2 108 chain 5260 chr15 102531392 + 66718496 66718558 MER41B 635 - 88 150 192414 62 chain 23606 chr15 102531392 + 66736598 66736874 AluSp 311 + 9 285 112545 276 chain 4452 chr15 102531392 + 66740085 66740173 L1MB3 1562 - 18 104 201317 18 3 2 11 6 0 4 0 6 39 1 0 6 chain 226698 chr15 102531392 + 66742214 66744638 L1HS 6032 + 3604 6032 17501 1578 0 4 846 chain 30835 chr15 102531392 + 66755687 66756434 MER4A1 472 - 0 472 82797 124 315 8 78 11 32 115 0 12 73 2 0 22 0 1 7 chain 37914 chr15 102531392 + 66757527 66757982 LTR2 463 - 4 463 72262 188 1 3 251 0 2 15 chain 49193 chr15 102531392 + 66758053 66758734 MER41-int 2638 - 580 1242 59602 173 11 9 12 18 0 196 1 0 228 0 1 11 9 5 9 0 5 13 chain 13836 chr15 102531392 + 66759598 66759778 LTR8 732 + 11 205 145109 4 0 1 16 0 9 148 0 4 12 chain 32570 chr15 102531392 + 66763095 66763538 MER4A1 472 - 0 472 79906 68 0 5 95 1 5 24 10 31 214 2 1 29 chain 12363 chr15 102531392 + 66848943 66849234 L1MB2 1706 + 1374 1690 150784 42 6 8 89 26 37 18 8 29 14 1 0 8 55 47 24 chain 33260 chr15 102531392 + 66873905 66874308 THE1A-int 1579 + 1174 1579 78787 379 0 1 20 0 1 4 chain 27233 chr15 102531392 + 66874308 66874660 THE1A 353 + 0 351 95485 106 5 4 241 chain 9636 chr15 102531392 + 66881859 66882010 LTR23 429 + 57 205 162415 38 13 9 43 1 2 56 chain 14210 chr15 102531392 + 66900688 66900931 L1PA16 3655 + 3400 3619 143844 18 1 3 148 11 8 16 33 10 16 chain 8768 chr15 102531392 + 66918490 66918629 Tigger3b 1229 + 62 205 166830 54 7 10 22 12 13 44 chain 3043 chr15 102531392 + 66960949 66961009 MLT1D 503 + 404 466 224138 28 13 15 19 chain 7953 chr15 102531392 + 66975097 66975335 MLT1F2 592 + 232 535 171315 47 13 17 23 51 115 25 1 19 10 24 6 36 3 0 5 chain 54705 chr15 102531392 + 66983107 66983745 L1PA5 6144 + 5491 6132 55896 379 3 0 9 0 1 30 1 5 83 1 2 132 chain 6337 chr15 102531392 + 67080234 67080333 L1MB3 1562 - 7 104 182490 29 3 2 61 1 0 5 chain 57997 chr15 102531392 + 67103058 67103735 L1PA6 6164 - 2 680 53974 330 0 1 347 chain 219643 chr15 102531392 + 67103735 67106469 L1P2 5180 - 2432 5178 17907 119 0 5 113 2 1 183 1 0 119 0 2 1181 0 3 118 0 4 107 1 0 6 1 0 272 1 0 8 11 10 95 50 78 9 6 0 3 15 0 63 2 1 54 2 1 43 6 5 143 chain 21855 chr15 102531392 + 67109893 67110146 AluYc3 301 + 38 291 120802 253 chain 46695 chr15 102531392 + 67121315 67121944 MER41B 635 + 0 635 61460 123 16 17 147 0 2 164 1 0 15 1 0 81 13 18 68 chain 5178 chr15 102531392 + 67152842 67152903 MIR 256 + 95 156 193246 61 chain 86942 chr15 102531392 + 67185202 67187127 HUERS-P1-int 2401 - 609 2246 40807 17 9 0 18 3 2 18 3 1 12 7 0 7 41 27 28 4 0 10 23 18 8 0 2 34 11 12 42 7 6 59 14 15 12 127 72 41 2 1 55 24 7 20 9 7 82 1 0 25 1 0 10 4 2 62 0 2 33 2 0 8 1 0 11 1 0 176 11 4 69 0 1 27 0 1 8 2 1 19 6 0 104 2 1 23 10 7 17 10 1 13 9 6 24 18 0 23 1 0 8 1 0 37 1 0 8 3 0 45 1 0 11 1 0 13 27 3 10 5 1 12 34 22 12 1 0 7 3 1 14 4 0 34 4 0 13 1 0 25 39 0 4 18 0 31 9 4 11 chain 14242 chr15 102531392 + 67248013 67248216 L1PA8 5853 + 5654 5853 143750 21 5 4 9 1 0 52 2 1 19 1 0 93 chain 25302 chr15 102531392 + 67261569 67261886 LTR17 781 - 463 781 103221 111 15 16 191 chain 373171 chr15 102531392 + 67262199 67266819 HERV17-int 4347 - 0 4334 10984 148 2 1 201 0 17 97 3 0 136 0 3 285 313 0 375 0 12 879 2 7 218 1 0 501 1 0 844 10 5 194 0 1 19 0 1 32 1 5 227 1 0 27 2 0 33 1 0 52 1 0 14 chain 40081 chr15 102531392 + 67268458 67268962 LTR17 781 - 0 526 69209 6 0 1 4 1 0 20 0 22 352 8 9 40 1 0 72 chain 3620 chr15 102531392 + 67293956 67294001 MLT1F-int 966 + 587 631 213359 39 1 0 5 chain 55066 chr15 102531392 + 67312844 67313458 L1PA4 6152 - 0 610 55664 504 4 0 106 chain 25156 chr15 102531392 + 67363866 67364153 AluY 311 + 0 286 103976 33 1 0 253 chain 24219 chr15 102531392 + 67371321 67371607 AluSp 311 - 17 303 109099 286 chain 4377 chr15 102531392 + 67387834 67387887 MER45B 1037 + 50 103 202233 53 chain 3559 chr15 102531392 + 67445923 67446099 MER20 218 + 24 188 214341 29 106 93 14 4 0 14 0 5 9 chain 21618 chr15 102531392 + 67520783 67521171 L1PA15 4387 + 3985 4354 121700 60 1 0 59 1 0 27 9 8 46 1 0 23 4 0 8 2 1 39 17 14 7 1 0 4 0 1 34 2 0 10 9 4 24 chain 30427 chr15 102531392 + 67534479 67534797 AluYb8 318 + 0 318 83596 318 chain 59966 chr15 102531392 + 67538903 67539626 LTR12 884 + 0 884 52841 24 1 0 16 0 59 232 0 47 372 6 62 72 chain 4034 chr15 102531392 + 67545984 67546027 AluJo 314 + 40 83 206860 43 chain 50075 chr15 102531392 + 67590115 67591845 L1MA3 4352 + 3168 4277 58962 95 2 1 13 0 5 95 0 2 8 4 0 32 854 263 38 6 18 112 0 4 27 6 7 17 8 1 187 113 73 32 0 4 33 4 0 23 2 0 19 chain 3802 chr15 102531392 + 67591954 67592023 L1MC5 759 - 60 128 210365 30 10 9 29 chain 7457 chr15 102531392 + 67604619 67604723 Charlie4a 502 + 358 472 174415 27 0 11 23 1 0 53 chain 59987 chr15 102531392 + 67618306 67619009 L1PA5 6144 - 3 703 52834 13 3 0 237 1 0 85 0 1 364 chain 19732 chr15 102531392 + 67643424 67643721 L1PA8 5853 - 0 291 128006 93 1 0 16 8 7 49 11 9 70 3 1 46 chain 27416 chr15 102531392 + 67656244 67656631 L1PA15 4387 - 73 448 94917 44 6 3 50 10 4 28 1 0 54 1 0 24 6 5 163 chain 4681 chr15 102531392 + 67660264 67660318 MIRc 230 + 64 118 198746 54 chain 3452 chr15 102531392 + 67672489 67672528 THE1D 372 + 333 372 216182 39 chain 302067 chr15 102531392 + 67728517 67732757 L1PBa1 4058 + 119 4040 13317 118 2 0 193 8 6 142 0 16 29 8 7 26 6 5 496 6 1 336 0 3 41 0 4 95 0 4 21 8 7 100 0 1 240 0 1 5 6 5 67 1 0 376 1 3 145 0 1 47 0 5 98 0 2 519 0 1 150 1 0 42 8 14 52 1 0 5 8 1 6 314 0 24 0 1 85 1 0 7 1 0 29 1 0 40 2 0 109 3 1 22 1 0 7 6 0 15 3 1 12 20 15 21 1 0 9 2 1 10 9 6 4 1 0 8 1 0 12 9 8 38 chain 550555 chr15 102531392 + 67740567 67746697 L1PA4 6152 - 4 6133 1368 504 3 0 166 0 4 1209 0 3 3631 0 2 53 1 0 106 16 10 441 chain 6117 chr15 102531392 + 67752464 67752588 MER33 330 - 177 330 184297 30 37 66 57 chain 22967 chr15 102531392 + 67785997 67786287 L1PA5 6144 - 1 289 115773 8 2 0 129 7 0 8 1 8 135 chain 29536 chr15 102531392 + 67789074 67789386 AluYb8 318 + 0 312 86497 312 chain 25744 chr15 102531392 + 67827739 67828040 AluY 311 + 0 297 101107 123 1 0 27 3 0 147 chain 12179 chr15 102531392 + 67831917 67832103 L1MB2 1706 + 1448 1621 151497 125 1 0 7 10 0 18 1 0 13 1 0 10 chain 29770 chr15 102531392 + 67845969 67846284 AluYb8 318 + 0 315 85575 315 chain 29133 chr15 102531392 + 67859693 67860001 AluYb8 318 - 10 318 88396 308 chain 29082 chr15 102531392 + 67869266 67869572 AluYb8 318 - 12 318 88633 306 chain 23783 chr15 102531392 + 67928468 67928760 AluY 311 + 0 297 111570 89 0 4 39 0 1 164 chain 4173 chr15 102531392 + 67928909 67928961 MER41B 635 - 88 139 204941 5 1 0 46 chain 40756 chr15 102531392 + 67929078 67929650 MLT2A2 560 + 9 560 68227 72 41 7 92 1 0 14 1 4 195 0 6 6 3 8 147 chain 139706 chr15 102531392 + 67964002 67965531 L1PA3long 6157 - 0 1531 26186 769 0 2 760 chain 69665 chr15 102531392 + 67986828 67987606 L1PA3long 6157 + 5378 6156 48542 778 chain 10178 chr15 102531392 + 68132276 68132383 U6 107 - 0 107 159726 107 chain 24481 chr15 102531392 + 68138934 68139306 THE1D 372 + 0 372 107651 15 0 2 15 1 0 23 9 0 10 13 14 105 16 18 109 0 5 56 chain 7263 chr15 102531392 + 68145441 68145532 LTR9 672 - 17 109 175698 34 0 1 57 chain 35503 chr15 102531392 + 68196224 68197036 LTR19A 502 - 14 502 75549 17 0 1 4 13 13 42 24 11 96 313 0 62 8 9 233 chain 25942 chr15 102531392 + 68209891 68210286 LTR23 429 - 61 429 100241 89 3 0 126 1 0 42 1 0 6 34 6 20 1 7 72 chain 6465 chr15 102531392 + 68229154 68229229 LTR12F 595 + 402 477 181517 75 chain 90282 chr15 102531392 + 68231370 68232399 L1PA5 6144 - 4 1033 39542 671 0 2 173 2 0 183 chain 58483 chr15 102531392 + 68232550 68233304 MER4E 760 + 0 760 53709 151 12 15 14 1 2 128 7 8 43 0 2 81 1 0 316 chain 10336 chr15 102531392 + 68235333 68235599 MLT1A0 366 + 54 321 158959 95 78 78 12 38 39 43 chain 26103 chr15 102531392 + 68277579 68277947 THE1C 375 - 0 375 99607 163 14 18 10 1 0 38 2 6 140 chain 6406 chr15 102531392 + 68281670 68281742 LTR16E1 515 + 377 449 181983 72 chain 79435 chr15 102531392 + 68299037 68300083 MER11C 1089 + 0 1073 43855 246 0 9 64 0 4 62 1 0 143 0 2 27 25 26 28 5 7 72 0 4 5 1 0 14 0 5 19 0 1 127 0 1 54 1 0 142 0 1 10 chain 17378 chr15 102531392 + 68300097 68300322 MSTA-int 1630 + 1398 1622 134569 59 3 1 58 1 0 95 0 2 9 chain 14232 chr15 102531392 + 68303380 68303584 Tigger3a 397 - 25 239 143789 16 17 16 24 0 11 147 chain 20285 chr15 102531392 + 68318708 68319056 THE1B 368 - 0 354 126268 56 7 6 64 21 33 7 0 1 8 24 17 59 9 10 93 chain 28720 chr15 102531392 + 68330500 68330943 MLT2A1 477 - 0 477 90248 47 3 45 26 16 12 140 11 12 24 3 0 28 0 4 17 11 5 117 chain 20427 chr15 102531392 + 68352695 68352955 AluSg 306 + 24 285 125823 21 12 13 227 chain 13649 chr15 102531392 + 68410158 68410355 L1MA6 2487 - 262 455 145782 149 13 9 35 chain 161070 chr15 102531392 + 68426082 68428927 SVA_D 2077 - 9 2022 23186 600 0 98 157 5 4 116 1 0 39 918 18 6 1 0 71 6 43 148 40 0 51 5 12 156 40 0 370 2 11 113 chain 1183 chr15 102531392 + 68427000 68427054 SVA_D 2077 - 671 725 95514 5 9 8 4 0 1 36 chain 40178 chr15 102531392 + 68427070 68427770 SVA_F 1814 - 523 1144 69069 17 1 0 136 75 0 10 1 0 162 51 18 50 0 1 9 0 1 32 0 39 41 71 65 11 4 0 29 chain 3199 chr15 102531392 + 68427225 68427299 SVA_F 1814 - 627 673 202381 8 0 5 11 34 1 21 chain 4336 chr15 102531392 + 68427472 68427523 SVA_F 1814 - 912 964 168288 4 0 1 16 0 1 25 1 0 5 chain 4860 chr15 102531392 + 68427655 68427726 SVA_F 1814 - 759 830 88257 71 chain 1587 chr15 102531392 + 68427847 68427918 SVA_D 2077 - 869 940 93365 71 chain 3291 chr15 102531392 + 68428150 68428189 SVA_D 2077 - 1229 1268 178038 39 chain 34083 chr15 102531392 + 68463278 68463756 Tigger3b 1229 - 493 971 77495 25 0 1 26 0 2 7 3 0 111 3 0 37 0 2 191 8 5 38 1 0 8 0 5 20 chain 53534 chr15 102531392 + 68464280 68464913 L1PA6 6164 - 13 655 56658 40 0 13 400 1 0 11 1 0 18 3 0 95 0 1 64 chain 5032 chr15 102531392 + 68492272 68492333 MER53 195 + 127 188 194804 61 chain 152428 chr15 102531392 + 68513596 68515479 SVA_A 1864 + 29 1863 24291 500 4 44 72 15 15 21 11 9 66 5 7 77 2 0 46 1 0 182 40 0 21 16 10 46 40 0 718 chain 2462 chr15 102531392 + 68514598 68514638 SVA_A 1864 + 734 773 68584 29 1 0 10 chain 2843 chr15 102531392 + 68514721 68514761 SVA_A 1864 + 1218 1256 57605 27 2 0 11 chain 4737 chr15 102531392 + 68528641 68528889 L1MB7 1623 + 1381 1591 198058 43 1 0 5 168 131 31 chain 19055 chr15 102531392 + 68536129 68536349 AluY 311 + 10 229 129955 123 1 0 96 chain 2916 chr15 102531392 + 68559100 68559132 U2 167 - 135 167 226750 32 chain 26929 chr15 102531392 + 68600452 68600790 HSMAR2 1300 + 1 338 96518 63 1 0 274 chain 9614 chr15 102531392 + 68602241 68602370 HSMAR2 1300 - 172 299 162516 59 2 0 68 chain 59184 chr15 102531392 + 68687258 68688009 L1P2 5180 + 2 1498 53290 86 0 729 256 7 8 264 3 4 27 0 10 67 4 8 37 chain 17120 chr15 102531392 + 68688009 68688212 L1PA6 6164 + 5950 6156 135256 82 0 3 121 chain 64029 chr15 102531392 + 68690188 68690904 L1P1 4361 + 1826 2544 50996 369 0 2 347 chain 7186 chr15 102531392 + 68769036 68769166 MSTA 426 + 31 179 176168 49 34 52 47 chain 14055 chr15 102531392 + 68773815 68774121 MER61A 341 + 0 335 144366 40 0 10 8 25 40 52 45 46 15 1 0 44 0 4 18 1 0 6 0 1 7 12 11 28 0 1 4 chain 3162 chr15 102531392 + 68787892 68787927 L1MA8 2339 + 1840 1875 221702 35 chain 4410 chr15 102531392 + 68798791 68798841 MLT2B4 540 + 1 51 201809 50 chain 42747 chr15 102531392 + 68798889 68799495 PRIMA4_LTR 623 + 29 623 65725 62 0 1 4 3 1 91 11 7 66 6 3 64 1 0 46 25 22 46 2 3 167 1 0 11 chain 22987 chr15 102531392 + 68942446 68942725 AluSp 311 + 21 311 115681 174 1 12 104 chain 3766 chr15 102531392 + 68980706 68980828 Tigger4a 237 - 115 237 210873 26 61 61 35 chain 26634 chr15 102531392 + 68983394 68983682 AluYf4 310 + 8 296 97537 288 chain 28038 chr15 102531392 + 68993817 68994122 AluYg6 310 - 5 310 92864 305 chain 24738 chr15 102531392 + 68995479 68995789 AluSc5 308 - 0 308 106233 244 9 7 57 chain 30427 chr15 102531392 + 69049579 69049897 AluYb8 318 - 0 318 83625 318 chain 25672 chr15 102531392 + 69092803 69093096 AluY 311 + 2 296 101398 130 0 1 163 chain 163283 chr15 102531392 + 69151247 69153429 SVA_D 2077 - 9 2022 22911 586 0 98 348 76 0 6 1 0 76 21 10 28 80 0 13 2 0 25 177 0 114 0 40 74 0 40 555 chain 4807 chr15 102531392 + 69152181 69152257 SVA_D 2077 - 737 813 66417 76 chain 5060 chr15 102531392 + 69152389 69152469 SVA_D 2077 - 896 976 66417 80 chain 11194 chr15 102531392 + 69152509 69152686 SVA_D 2077 - 1016 1067 66417 12 142 16 23 chain 9711 chr15 102531392 + 69152545 69152663 SVA_D 2077 - 875 993 70126 118 chain 6957 chr15 102531392 + 69164552 69164650 L1MC1 2226 - 700 799 177763 40 3 4 55 chain 15312 chr15 102531392 + 69173842 69174053 MER44A 345 + 133 345 140455 105 9 10 97 chain 24942 chr15 102531392 + 69182104 69182403 AluSp 311 - 10 311 105096 97 0 1 132 0 1 70 chain 11500 chr15 102531392 + 69203113 69203369 L1MB2 1706 - 12 259 154298 71 1 0 12 1 0 13 1 0 15 82 76 60 chain 268137 chr15 102531392 + 69208905 69211868 L1PA4 6152 + 3151 6122 15284 26 1 0 74 0 3 428 7 0 1549 0 1 72 0 4 73 0 8 733 chain 68889 chr15 102531392 + 69220515 69221583 LTR12E 1234 - 0 1036 48859 30 0 4 78 20 13 15 100 0 86 7 9 398 5 6 99 4 41 85 0 43 23 8 5 45 9 0 56 chain 15874 chr15 102531392 + 69223426 69223613 L1PA5 6144 - 0 186 138725 9 2 0 90 0 1 86 chain 9552 chr15 102531392 + 69229857 69229975 L1PA8A 6298 - 8 127 162821 23 0 1 95 chain 8784 chr15 102531392 + 69243458 69243664 Tigger4 2445 - 71 265 166749 14 3 0 40 69 62 43 1 0 30 1 0 5 chain 23573 chr15 102531392 + 69253411 69253824 L1PB2 3958 - 212 587 112722 67 8 7 55 2 1 45 60 30 90 7 3 9 2 0 68 chain 172525 chr15 102531392 + 69256014 69257899 SVA_D 2077 - 0 2070 21760 6 1 0 634 0 49 295 0 1 38 1 138 386 0 1 320 2 0 202 chain 114102 chr15 102531392 + 69267114 69268572 LTR12C 1709 - 7 1709 33072 75 1 0 399 44 13 97 12 9 13 0 160 88 0 118 516 1 2 212 chain 84239 chr15 102531392 + 69269480 69270536 MER11B 1079 - 22 1079 41803 26 0 1 153 0 1 103 1 3 149 21 1 286 1 18 316 chain 29304 chr15 102531392 + 69275030 69275337 AluYb8 318 - 11 318 87553 307 chain 28010 chr15 102531392 + 69276495 69276993 HERV1_LTRa 508 + 0 508 92969 26 39 48 13 20 10 109 0 1 21 66 76 204 chain 29768 chr15 102531392 + 69280445 69280891 LTR7B 505 + 9 494 85580 96 0 10 69 37 68 18 8 10 82 1 0 79 14 13 26 2 0 14 chain 52586 chr15 102531392 + 69285114 69286175 HERV3-int 2824 - 211 2410 57243 19 68 0 40 14 7 14 5 1 11 1 0 38 1 0 68 1 0 90 1 0 136 11 10 12 17 15 5 2 0 49 1 0 20 19 16 28 1 0 8 3 1 20 6 3 14 7 6 12 16 10 116 2 0 37 12 11 18 6 1263 35 1 0 4 1 0 32 9 5 7 3 0 8 1 0 5 1 0 5 chain 20007 chr15 102531392 + 69297917 69298441 LTR10E 629 - 42 624 127124 18 22 21 15 1 0 17 13 12 28 0 150 14 181 33 63 0 60 140 2 1 10 chain 37140 chr15 102531392 + 69299990 69300466 LTR10F 562 + 0 560 73322 166 7 0 20 0 93 192 2 0 89 chain 8744 chr15 102531392 + 69301841 69302020 L1MB3 1562 - 59 211 166951 39 1 0 20 52 26 67 chain 19756 chr15 102531392 + 69309181 69309461 MER4B 649 + 0 322 127939 113 1 0 4 1 2 30 8 50 123 chain 16761 chr15 102531392 + 69334094 69334321 MER30 238 + 0 229 136224 107 10 15 73 3 0 34 chain 32852 chr15 102531392 + 69361780 69362172 L1PA7 6471 + 6068 6459 79453 240 2 1 150 chain 7810 chr15 102531392 + 69396154 69396263 MER5A1 166 - 30 142 172255 25 6 8 20 0 1 58 chain 24848 chr15 102531392 + 69399036 69399340 AluSp 311 + 0 306 105631 46 2 0 128 1 5 127 chain 32096 chr15 102531392 + 69438915 69439294 L1PA7 6471 - 2 381 80697 379 chain 34977 chr15 102531392 + 69445749 69446174 L1PA7 6471 - 1 414 76215 4 1 0 7 5 0 103 6 0 299 chain 24035 chr15 102531392 + 69460875 69461159 AluSp 311 - 15 300 110136 65 0 1 219 chain 38184 chr15 102531392 + 69461742 69462195 L1PA5 6144 - 0 461 71863 96 3 4 38 0 7 316 chain 16254 chr15 102531392 + 69481406 69481975 L1MC1 2226 - 61 592 137597 13 1 0 13 1 0 10 109 82 32 1 0 10 140 122 27 1 0 8 8 6 64 22 40 19 6 1 84 chain 2829 chr15 102531392 + 69489830 69489860 HSMAR1 1287 - 1257 1287 228253 30 chain 6716 chr15 102531392 + 69514228 69514319 L1P4e 1373 - 174 264 179563 11 1 0 79 chain 30133 chr15 102531392 + 69538372 69538773 Tigger1 2417 - 534 973 84371 69 1 36 142 1 4 6 0 1 132 1 0 49 chain 2926 chr15 102531392 + 69547824 69547873 MER119 576 + 487 535 226577 27 6 5 16 chain 29117 chr15 102531392 + 69565793 69566112 AluYb8 318 - 0 317 88475 192 2 0 125 chain 11486 chr15 102531392 + 69568446 69568578 MER85 139 + 7 139 154352 132 chain 8408 chr15 102531392 + 69574464 69574615 MER20 218 + 22 172 168800 43 37 35 11 0 1 60 chain 87277 chr15 102531392 + 69623730 69625958 HUERS-P1-int 2401 + 170 1982 40659 31 9 0 4 48 0 25 1 0 11 7 2 37 4 0 7 73 46 12 5 1 13 54 26 43 3 0 7 1 0 38 1 0 8 2 0 12 29 11 26 15 8 10 9 1 16 9 6 136 14 17 103 11 3 178 1 0 9 1 0 8 2 0 49 3 1 47 18 15 22 1 0 77 1 0 32 30 7 52 5 4 26 152 82 6 2 0 6 1 0 13 2 0 3 0 3 5 1 2 59 1 0 44 6 4 41 2 1 22 6 4 10 4 0 28 37 26 8 5 0 13 2 0 19 2 1 18 9 0 11 32 22 8 4 0 7 13 0 13 1 0 7 2 0 7 6 0 3 1 0 15 5 0 10 1 0 4 98 44 11 2 1 26 3 4 8 1 0 6 chain 13340 chr15 102531392 + 69649453 69649942 MSTA 426 + 251 425 146933 134 315 0 40 chain 34860 chr15 102531392 + 69651659 69652109 LTR2 463 - 12 463 76395 60 2 1 15 12 13 257 0 1 104 chain 22717 chr15 102531392 + 69657078 69657366 AluSg7 307 - 10 299 117003 155 10 11 123 chain 9585 chr15 102531392 + 69690030 69690193 LTR5B 1012 - 0 1004 162665 8 0 2 67 12 852 33 2 1 41 chain 9137 chr15 102531392 + 69698779 69698889 HY1 111 + 0 111 164873 77 0 1 33 chain 29821 chr15 102531392 + 69765434 69765744 AluYb8 318 - 7 317 85371 310 chain 5943 chr15 102531392 + 69766207 69766317 MER33 330 - 103 313 185753 60 5 104 23 11 12 11 chain 6495 chr15 102531392 + 69838000 69838097 L1MA3 4352 + 4191 4282 181298 45 5 1 21 2 0 24 chain 22530 chr15 102531392 + 69856577 69856834 L1PA5 6144 - 0 257 117896 257 chain 108976 chr15 102531392 + 69858961 69860260 LTR12C 1709 - 0 1709 34447 30 1 0 76 2 28 8 0 104 235 0 4 106 3 1 5 1 0 104 0 278 463 0 2 265 chain 5289 chr15 102531392 + 69891474 69891588 MER53 195 - 38 165 192128 37 39 52 38 chain 540471 chr15 102531392 + 69909382 69915499 L1PA4 6152 - 11 6146 2740 541 0 1 209 1 0 458 0 9 118 3 0 454 0 4 121 0 1 545 1 0 46 2 1 295 1 2 469 0 3 39 1 0 459 0 1 359 0 3 1518 4 5 329 0 1 144 chain 26765 chr15 102531392 + 69970319 69970702 MER4B 649 - 8 417 97106 10 1 0 68 1 0 89 9 11 32 3 30 84 1 0 85 chain 5964 chr15 102531392 + 69971801 69971912 MER20 218 + 32 140 185567 6 1 0 36 24 22 44 chain 57247 chr15 102531392 + 69975425 69976354 Tigger1 2417 - 1386 2344 54370 271 0 1 4 6 10 64 11 15 101 10 14 48 11 12 28 1 2 69 56 61 4 1 0 30 30 41 110 1 0 73 chain 27758 chr15 102531392 + 69977053 69977420 L1PA8 5853 - 0 358 93838 93 1 0 19 8 7 46 1 0 9 0 2 30 5 0 39 2 0 48 1 0 65 chain 124104 chr15 102531392 + 69999387 70000985 THE1A-int 1579 - 5 1579 29664 10 0 1 84 0 1 5 1 0 5 1 0 393 0 7 620 0 1 209 34 0 60 13 15 39 10 8 99 0 2 15 chain 24625 chr15 102531392 + 70000985 70001338 THE1A 353 - 0 353 106858 10 2 1 5 0 1 94 9 9 123 6 5 18 4 5 82 chain 4299 chr15 102531392 + 70033173 70033220 L1MB8 1703 + 1346 1393 203214 47 chain 488041 chr15 102531392 + 70061772 70067505 L1PA6 6164 + 412 6138 7441 88 11 10 76 1 0 411 7 10 477 0 1 584 0 1 257 39 0 582 0 2 278 1 2 544 2 1 1162 0 7 806 3 0 134 0 17 65 0 6 205 chain 25428 chr15 102531392 + 70077802 70078222 MLT2A1 477 - 74 477 102557 10 18 0 6 4 0 64 1 0 117 12 11 22 9 13 19 14 15 13 0 2 111 chain 2929 chr15 102531392 + 70098092 70098123 MER103C 291 - 126 157 226543 31 chain 24926 chr15 102531392 + 70156815 70157157 THE1B 368 - 0 368 105186 27 1 3 45 1 0 91 2 0 29 2 1 109 0 28 35 chain 51528 chr15 102531392 + 70172164 70172782 L1PA7 6471 - 1 620 57946 242 5 6 371 chain 3867 chr15 102531392 + 70195096 70195230 MIRb 242 - 35 174 209343 20 75 80 39 chain 2903 chr15 102531392 + 70208150 70208185 Charlie16a 284 + 148 183 226997 35 chain 123801 chr15 102531392 + 70220541 70222113 THE1B-int 1605 - 8 1605 29771 363 5 4 12 0 1 766 21 46 377 2 0 5 0 2 21 chain 21021 chr15 102531392 + 70237686 70237932 L1PA5 6144 + 5882 6128 123843 246 chain 51415 chr15 102531392 + 70252848 70253432 L1PA4 6152 + 5548 6143 58024 123 0 9 241 0 2 220 chain 8118 chr15 102531392 + 70314455 70314647 MER66B 489 + 295 489 170393 42 74 77 49 2 1 25 chain 26503 chr15 102531392 + 70397507 70397806 L1PA4 6152 + 5853 6152 98029 299 chain 66589 chr15 102531392 + 70404750 70405496 L1PA3long 6157 - 0 748 49835 4 0 1 142 5 4 223 0 2 372 chain 5665 chr15 102531392 + 70425893 70426058 MER63A 208 - 0 157 188435 38 22 15 25 54 53 26 chain 9132 chr15 102531392 + 70451089 70451429 MLT1D 503 + 88 469 164897 33 0 5 30 127 142 46 49 0 9 10 80 36 chain 4952 chr15 102531392 + 70459660 70459726 MIR 256 - 121 187 195677 12 1 0 6 0 1 47 chain 5147 chr15 102531392 + 70485574 70485654 U6 107 + 0 78 193572 20 8 6 52 chain 25309 chr15 102531392 + 70541553 70541846 AluSc8 310 + 4 301 103179 127 0 4 166 chain 5142 chr15 102531392 + 70581027 70581112 MIR 256 + 106 189 193637 54 12 10 19 chain 4924 chr15 102531392 + 70598760 70598828 L1MD1 2063 - 241 305 195995 48 1 0 5 3 0 11 chain 3531 chr15 102531392 + 70602593 70602633 MIRb 242 - 104 144 214845 40 chain 16204 chr15 102531392 + 70631551 70631735 L1PA5 6144 + 5960 6144 137735 184 chain 13929 chr15 102531392 + 70656384 70656740 THE1B 368 - 0 365 144825 49 14 13 56 93 99 20 38 41 67 0 1 19 chain 498172 chr15 102531392 + 70660186 70666240 L1PA6 6164 + 129 6160 6947 67 0 1 138 0 1 123 7 6 46 0 15 5 15 0 36 1 0 257 28 11 70 0 1 74 0 14 397 9 1 392 1 0 538 23 3 847 51 19 46 4 5 82 0 12 302 0 1 64 0 1 82 0 1 275 0 1 743 0 25 484 1 0 147 0 4 548 3 1 139 3 0 6 chain 3758 chr15 102531392 + 70674479 70674524 MLT1F 544 + 444 490 210984 30 0 1 15 chain 3070 chr15 102531392 + 70760492 70760527 MIR 256 - 108 143 223563 35 chain 4754 chr15 102531392 + 70764231 70764289 MER74A 558 + 20 78 197868 58 chain 153278 chr15 102531392 + 70802774 70804946 L1PA16 3655 + 1254 3578 24192 209 6 4 77 15 10 237 0 2 207 2 1 74 9 1 163 0 10 11 0 180 48 11 11 16 4 0 160 2 1 79 4 9 139 2 0 19 1 0 69 1 0 119 3 1 7 0 2 54 1 0 26 6 5 81 17 15 237 24 5 25 0 3 7 chain 26326 chr15 102531392 + 70817629 70818009 MER51B 395 + 0 395 98716 39 8 27 147 18 16 10 1 0 6 1 0 150 chain 10658 chr15 102531392 + 70835110 70835250 L1MB7 1623 + 102 243 157575 56 1 2 83 chain 4902 chr15 102531392 + 70845194 70845263 MSTC 436 - 275 348 196253 19 4 8 46 chain 25240 chr15 102531392 + 70866669 70867010 THE1B 368 - 0 368 103533 56 7 6 138 1 0 77 0 14 18 0 15 44 chain 125328 chr15 102531392 + 70878530 70880069 LTR12C 1709 - 0 1709 29293 333 0 2 44 31 30 72 0 4 105 2 0 7 1 0 43 0 41 180 0 118 203 0 2 144 2 0 202 2 11 168 chain 127565 chr15 102531392 + 70883852 70885416 THE1B-int 1605 + 0 1600 28680 361 13 23 44 0 26 1146 chain 24573 chr15 102531392 + 70905964 70906264 AluSp 311 + 11 311 107118 300 chain 28508 chr15 102531392 + 70908628 70908997 THE1C 375 - 2 375 91155 142 4 7 37 1 2 185 chain 176917 chr15 102531392 + 70912167 70914182 L1PA5 6144 + 4108 6127 21259 1335 0 1 508 0 3 172 chain 18832 chr15 102531392 + 70918248 70918836 L1PB4 2604 + 2243 2544 130572 37 297 20 83 2 0 17 14 7 33 1 0 104 chain 25048 chr15 102531392 + 70929575 70929876 AluSc 308 + 0 307 104552 47 0 6 254 chain 24270 chr15 102531392 + 70933886 70934180 AluSg7 307 - 3 295 108850 172 2 0 120 chain 3116 chr15 102531392 + 70934192 70934228 MER63D 473 - 367 403 222632 36 chain 13784 chr15 102531392 + 70953149 70953388 MER44A 345 + 110 344 145326 65 1 6 59 10 9 22 20 12 50 1 0 11 chain 198930 chr15 102531392 + 70954131 70956360 L1PA4 6152 + 3920 6143 19284 1378 0 4 385 10 0 456 chain 31186 chr15 102531392 + 70997111 70997542 MER57A1 433 - 2 433 82187 140 21 23 107 3 1 160 chain 26324 chr15 102531392 + 71013686 71013981 AluY 311 + 4 298 98722 114 1 0 180 chain 22312 chr15 102531392 + 71020328 71020620 L1PA16 3655 + 2359 2648 118868 17 1 0 33 2 0 239 chain 6808 chr15 102531392 + 71021872 71021952 L1PBa1 4058 - 3690 3770 178887 80 chain 517581 chr15 102531392 + 71021992 71027499 L1HS 6032 + 0 6032 5413 74 0 1 21 0 524 5412 chain 25876 chr15 102531392 + 71036301 71036607 AluY 311 + 0 302 100542 192 4 0 110 chain 142175 chr15 102531392 + 71037398 71039478 L1PA7 6471 + 4730 6467 25787 85 327 0 19 10 14 396 22 0 377 1 0 82 1 0 106 0 3 536 1 5 39 0 1 66 4 0 8 chain 22885 chr15 102531392 + 71044292 71044597 AluSp 311 + 0 303 116164 26 5 4 102 2 0 127 1 0 18 1 3 23 chain 26389 chr15 102531392 + 71064554 71064859 AluY 311 + 4 310 98452 128 0 1 177 chain 21317 chr15 102531392 + 71072320 71072633 AluY 311 + 0 311 122815 47 19 27 5 1 0 54 16 7 171 chain 8400 chr15 102531392 + 71072633 71072727 MER4A1 472 - 378 472 168856 94 chain 4303 chr15 102531392 + 71082430 71082482 MER6A 605 + 553 605 203182 52 chain 42244 chr15 102531392 + 71096949 71097492 MER9a2 513 + 0 513 66343 18 0 1 280 32 0 82 4 5 127 chain 15321 chr15 102531392 + 71130185 71130518 Tigger4b 360 - 5 338 140424 57 2 1 62 2 3 33 22 23 37 74 73 44 chain 26566 chr15 102531392 + 71133251 71133551 AluYk4 311 - 13 311 97783 17 2 0 281 chain 128823 chr15 102531392 + 71163291 71164759 SVA_B 1603 - 0 1603 28356 587 0 82 42 0 40 808 18 31 13 chain 3012 chr15 102531392 + 71198174 71198208 MER39 703 + 328 362 224773 34 chain 25523 chr15 102531392 + 71218858 71219151 L1PA4 6152 - 0 293 102123 293 chain 18495 chr15 102531392 + 71234932 71235143 MER4E1 777 - 11 222 131510 211 chain 49935 chr15 102531392 + 71235582 71236279 MER50 708 - 0 676 59065 339 5 4 149 51 29 11 2 1 117 4 7 19 chain 469347 chr15 102531392 + 71260340 71266060 L1PA7 6471 - 12 5745 8060 132 9 10 72 0 1 183 0 4 290 15 13 5 0 1 48 0 2 81 1 0 603 0 1 39 6 7 295 0 4 89 0 1 4 1 0 64 0 1 259 1 0 246 6 0 514 7 8 184 1 5 218 0 12 327 1 0 90 17 5 230 1 0 1015 0 3 159 0 5 112 2 1 311 1 2 65 4 0 12 chain 25124 chr15 102531392 + 71273558 71273845 L1PA7 6471 + 6185 6469 104155 130 1 0 144 2 0 10 chain 559672 chr15 102531392 + 71276985 71283120 L1PA3long 6157 - 15 6153 375 764 1 0 20 1 3 601 4 0 3300 0 4 210 0 2 1234 chain 112651 chr15 102531392 + 71284403 71285856 L1P1 4361 - 2973 4357 33485 250 0 2 266 75 0 241 0 2 273 1 0 297 1 4 49 chain 12942 chr15 102531392 + 71313291 71313464 MER30 238 - 8 199 148463 101 4 19 14 0 3 54 chain 33750 chr15 102531392 + 71316734 71318368 L1PA10 4194 + 255 2091 19998 16 2 0 15 1 0 8 56 29 6 0 1 7 2 0 44 0 3 11 7 0 8 1 0 85 10 3 103 6 66 75 2 3 24 0 5 93 1 2 86 4 0 6 4 8 228 0 1 75 0 180 145 0 6 112 27 7 51 2 1 96 0 8 140 0 4 75 chain 494154 chr15 102531392 + 71318368 71324761 L1PA7 6471 - 109 6456 7163 6 0 3 20 1 0 243 0 1 245 53 24 47 6 11 141 1 0 19 1 0 806 9 10 186 2 0 770 0 1 326 1 0 75 0 1 4 1 0 77 6 5 64 0 3 6 2 0 104 79 1 63 10 14 445 0 2 403 0 4 681 2 16 126 9 12 132 0 6 9 0 3 322 16 0 74 0 1 119 46 64 261 1 2 97 19 20 17 13 28 227 chain 2675 chr15 102531392 + 71321599 71321669 L1PA7 6471 - 3260 3300 228879 21 31 1 18 chain 24208 chr15 102531392 + 71324785 71325957 L1PA10 4194 + 3019 4163 19998 114 1 2 96 14 14 482 2 0 6 0 2 171 25 0 176 1 0 34 3 0 26 0 1 7 1 0 13 chain 74659 chr15 102531392 + 71327688 71328628 L1PA7 6471 - 2 948 46181 332 0 1 34 5 3 89 9 14 341 0 1 33 1 0 45 0 2 51 chain 130408 chr15 102531392 + 71338220 71340045 L1PA16 3655 - 86 1927 27986 12 0 5 148 10 6 108 2 0 36 0 1 5 1 0 47 1 0 52 5 1 233 1 0 11 1 0 15 0 4 211 22 35 71 8 5 178 0 1 143 1 2 55 0 1 147 0 4 137 26 29 41 1 0 30 0 2 26 1 0 39 chain 162233 chr15 102531392 + 71386919 71388669 L1PA2 6032 + 4277 6027 23029 1750 chain 5545 chr15 102531392 + 71397420 71397505 MER49 923 - 837 923 189612 9 2 0 5 1 3 34 0 1 34 chain 12634 chr15 102531392 + 71427018 71427151 L1PA2 6032 - 558 691 149714 133 chain 42671 chr15 102531392 + 71427156 71427617 L1PA2 6032 + 5469 5930 65812 461 chain 9142 chr15 102531392 + 71427617 71427714 L1PA2 6032 + 5934 6031 164849 97 chain 557493 chr15 102531392 + 71466478 71472491 L1PA2 6032 + 5 6029 558 153 0 11 262 1 0 283 0 1 5314 chain 4292 chr15 102531392 + 71475782 71475847 MIR 256 + 80 155 203327 13 5 15 47 chain 3131 chr15 102531392 + 71480345 71480381 MER94 134 + 63 99 222345 36 chain 8742 chr15 102531392 + 71485888 71486044 THE1B 368 + 0 164 166966 14 10 15 56 7 8 15 7 9 47 chain 15419 chr15 102531392 + 71500000 71500221 MER1B 344 + 120 339 140136 143 24 22 54 chain 11994 chr15 102531392 + 71506406 71506919 LTR12 884 + 244 884 152225 32 1 42 18 287 339 70 1 0 5 31 66 68 chain 13596 chr15 102531392 + 71534133 71534316 MER30 238 + 0 197 145990 109 8 22 66 chain 4268 chr15 102531392 + 71551084 71551138 MLT1C 463 + 57 112 203643 50 0 1 4 chain 340956 chr15 102531392 + 71557495 71561625 L1P3 4156 + 0 4139 11874 251 1 0 69 1 0 89 1 0 203 2 0 769 1 2 346 1 0 316 1 3 140 7 6 327 0 2 112 8 10 448 0 4 402 2 0 16 12 5 99 5 8 291 1 15 171 3 1 9 3 2 23 chain 22040 chr15 102531392 + 71567973 71568337 THE1C 375 + 13 375 120070 75 0 1 29 4 2 63 47 47 105 16 15 25 chain 33791 chr15 102531392 + 71602646 71603270 MER39B 650 - 0 650 77954 14 0 2 25 60 79 30 24 7 48 7 8 41 1 0 69 2 12 12 5 0 14 1 5 129 4 5 4 1 0 12 11 12 75 0 12 35 chain 40747 chr15 102531392 + 71611588 71612071 L1PA5 6144 - 6 482 68244 147 7 0 329 chain 10881 chr15 102531392 + 71625138 71625340 MER30 238 + 0 238 156658 16 37 52 26 0 2 11 3 15 95 0 7 14 chain 5429 chr15 102531392 + 71640081 71640146 MER3 215 - 140 205 190710 65 chain 505265 chr15 102531392 + 71659631 71665329 L1PA5 6144 - 2 5716 6509 7 4 0 137 0 9 1644 0 4 664 0 2 165 2 1 213 1 0 125 0 1 444 0 1 147 0 2 217 0 1 1612 0 2 316 chain 53963 chr15 102531392 + 71693934 71694574 L1PA6 6164 + 5498 6162 56393 618 0 26 14 2 0 6 chain 146677 chr15 102531392 + 71709415 71711531 L1MA2 4263 - 679 2861 25058 17 1 0 21 0 1 364 3 1 14 1 0 4 28 29 297 3 4 187 3 1 26 30 0 61 0 4 12 2 3 255 5 6 84 5 4 14 0 1 154 5 4 15 4 92 30 2 1 23 8 6 47 5 7 48 1 0 66 1 0 145 0 4 28 0 4 11 1 2 85 chain 54123 chr15 102531392 + 71731708 71732366 L1PA7 6471 + 5813 6468 56277 177 0 3 314 8 6 148 4 0 7 chain 23109 chr15 102531392 + 71739448 71739769 AluSc 308 - 0 308 115098 30 1 0 224 22 10 44 chain 14361 chr15 102531392 + 71743020 71743231 MER34C2 569 - 0 207 143340 23 2 0 5 0 1 61 10 9 103 2 0 5 chain 5541 chr15 102531392 + 71744876 71744943 MLT1A 405 + 29 97 189651 28 0 1 39 chain 28840 chr15 102531392 + 71762971 71763273 AluYb8 318 - 16 318 89722 302 chain 24046 chr15 102531392 + 71860931 71861211 L1PA5 6144 - 0 280 110070 280 chain 70356 chr15 102531392 + 71879360 71880124 L1PA2 6032 + 5267 6031 48237 764 chain 23547 chr15 102531392 + 71887592 71887936 THE1A 353 + 8 353 112869 63 0 1 37 18 17 76 1 0 108 5 7 36 chain 22960 chr15 102531392 + 71898890 71899168 AluSp 311 - 23 301 115803 176 1 2 6 1 0 94 chain 63616 chr15 102531392 + 71934605 71935299 L1PA3long 6157 + 5463 6157 51180 694 chain 30773 chr15 102531392 + 71942842 71943230 MER48 407 + 0 407 82915 15 1 0 15 0 1 4 1 0 98 1 21 253 chain 35486 chr15 102531392 + 71957954 71958597 L1PREC2 3366 - 296 889 75577 7 1 0 4 1 0 11 2 0 38 6 4 35 22 8 11 4 1 29 4 2 10 10 5 17 35 21 14 11 7 40 1 0 50 6 4 208 0 1 66 chain 31998 chr15 102531392 + 71962422 71962804 L1PA6 6164 - 2 382 80867 13 3 0 130 3 4 233 chain 285724 chr15 102531392 + 71962851 71966118 L1PA5 6144 - 13 3290 14303 165 0 2 159 1 0 80 4 0 114 0 16 114 0 1 395 0 1 326 1 0 286 3 2 315 1 0 985 1 0 298 1 0 18 chain 22157 chr15 102531392 + 71982936 71983267 THE1B 368 - 20 368 119561 56 19 20 73 6 8 17 1 0 109 6 21 44 chain 21423 chr15 102531392 + 71991549 71991777 AluYa5 310 - 9 236 122432 175 1 0 52 chain 21532 chr15 102531392 + 72013567 72013859 AluSc 308 + 8 293 122037 12 6 0 127 20 19 127 chain 8785 chr15 102531392 + 72026573 72026820 L1MC1 2226 + 1798 2047 166740 44 17 31 14 55 48 22 26 23 15 2 0 52 chain 82189 chr15 102531392 + 72061265 72062275 SVA_F 1814 + 896 1813 42683 51 0 15 35 3 0 14 1 0 116 0 1 10 1 0 75 102 0 61 1 0 524 1 0 15 chain 7044 chr15 102531392 + 72061571 72061673 SVA_F 1814 + 924 1037 101990 23 0 15 35 3 0 14 1 0 26 chain 508859 chr15 102531392 + 72085366 72090979 L1PA3long 6157 - 0 6147 6254 5 0 2 1025 2 1 2440 0 2 175 0 1 1266 0 2 46 0 3 252 0 1 200 1 0 21 1 0 93 0 526 86 chain 4917 chr15 102531392 + 72122969 72123046 MER3 215 - 53 135 196079 18 10 15 49 chain 91120 chr15 102531392 + 72150099 72151203 L1PA5 6144 + 5135 6141 39255 811 98 0 195 chain 7798 chr15 102531392 + 72150910 72151000 5S 121 + 0 90 172316 90 chain 124504 chr15 102531392 + 72199286 72200659 L1PA3long 6157 - 0 1373 29543 1373 chain 27015 chr15 102531392 + 72220399 72220686 AluYb8 318 - 0 287 96236 287 chain 3532 chr15 102531392 + 72228530 72228570 L1MA6 2487 + 2339 2379 214839 40 chain 21353 chr15 102531392 + 72255806 72256076 AluSp 311 - 29 295 122676 130 3 1 26 2 0 109 chain 34616 chr15 102531392 + 72290917 72291322 L1PA3long 6157 - 0 401 76737 15 6 2 384 chain 23758 chr15 102531392 + 72318348 72318641 AluY 311 + 10 310 111716 18 0 6 98 0 1 177 chain 21277 chr15 102531392 + 72348567 72349030 L1PB1 5432 + 4954 5391 122934 38 7 5 106 13 11 24 1 0 4 3 2 14 4 0 10 2 0 52 2 1 9 11 10 37 8 7 12 1 0 4 58 49 21 1 0 21 chain 24126 chr15 102531392 + 72363054 72363494 L1P4 1494 + 948 1390 109607 241 23 22 37 4 73 11 65 0 18 1 0 40 chain 3183 chr15 102531392 + 72384724 72384773 MER58B 340 - 7 55 221271 28 4 3 17 chain 50831 chr15 102531392 + 72392662 72393315 SVA_D 2077 + 328 1219 58410 58 0 68 349 40 0 67 0 131 36 0 1 17 0 1 37 1 0 32 0 78 16 chain 10491 chr15 102531392 + 72393333 72393473 SVA_F 1814 + 855 1011 76195 25 4 5 63 0 15 48 chain 89115 chr15 102531392 + 72393473 72394848 SVA_F 1814 + 380 1812 39958 8 1 0 37 0 195 40 325 4 65 0 169 48 0 16 39 1 0 185 0 1 268 0 3 339 0 1 4 5 0 10 chain 28295 chr15 102531392 + 72393559 72393884 SVA_F 1814 + 856 1200 73029 26 0 1 50 1 4 11 0 15 237 chain 4111 chr15 102531392 + 72394874 72394917 tRNA-Gln-CAG 43 + 0 43 205769 43 chain 2818 chr15 102531392 + 72418537 72418581 MER3 215 - 22 72 228491 28 3 9 13 chain 26431 chr15 102531392 + 72422898 72423202 AluSp 311 - 6 310 98302 304 chain 5794 chr15 102531392 + 72530091 72530217 L1MA3 4352 + 4235 4352 187212 25 2 0 21 9 7 22 4 3 15 6 2 22 chain 17683 chr15 102531392 + 72537151 72537421 THE1B 368 - 0 268 133739 46 18 16 4 0 1 129 11 10 62 chain 9134 chr15 102531392 + 72547948 72548094 MLT2B4 540 + 400 536 164891 92 14 0 8 1 5 31 chain 22443 chr15 102531392 + 72600592 72600859 AluSp 311 - 35 303 118278 70 2 3 195 chain 6208 chr15 102531392 + 72617740 72617877 L1MDa 1598 - 882 1023 183516 5 2 0 55 26 30 15 8 10 26 chain 4230 chr15 102531392 + 72672673 72672892 MER8 282 + 0 259 204165 35 97 172 18 11 0 11 31 7 16 chain 27190 chr15 102531392 + 72683761 72684069 AluSp 311 - 3 311 95628 308 chain 163871 chr15 102531392 + 72688142 72689977 SVA_D 2077 + 6 2074 22824 19 12 0 11 13 0 881 0 137 38 0 1 126 0 1 126 0 99 478 0 20 131 chain 51070 chr15 102531392 + 72704482 72705048 L1P1 4361 - 2775 3341 58272 566 chain 101899 chr15 102531392 + 72705056 72706206 L1PA5 6144 + 4986 6129 36285 1006 7 0 137 chain 144511 chr15 102531392 + 72708046 72709645 L1PA5 6144 + 4527 6135 25396 1466 0 9 133 chain 328462 chr15 102531392 + 72720698 72724373 L1PA5 6144 - 2 3677 12259 111 1 0 35 6 0 1485 0 5 1350 0 2 687 chain 37767 chr15 102531392 + 72735146 72735567 L1PA5 6144 + 5567 5989 72467 404 0 1 17 chain 9047 chr15 102531392 + 72735567 72735667 L1PA5 6144 + 5990 6090 165332 100 chain 4199 chr15 102531392 + 72735668 72735715 L1PA5 6144 + 6092 6139 204546 47 chain 3255 chr15 102531392 + 72771510 72771625 Tigger4a 237 - 193 237 219909 35 71 0 9 chain 37475 chr15 102531392 + 72776631 72777465 L1PB1 5432 - 12 651 72849 16 1 0 11 7 6 17 1 0 24 2 0 15 1 0 4 2 0 15 62 48 28 1 0 15 2 1 43 1 0 10 2 0 8 7 3 10 2 1 5 1 0 26 1 0 11 165 0 79 9 10 27 0 3 203 chain 22812 chr15 102531392 + 72802832 72803106 AluY 311 + 29 311 116519 94 0 8 180 chain 20256 chr15 102531392 + 72807414 72807653 AluSp 311 + 20 258 126357 112 2 0 92 0 1 33 chain 27514 chr15 102531392 + 72827297 72827591 AluYf4 310 - 16 310 94619 294 chain 26557 chr15 102531392 + 72833287 72833648 LTR14A 344 - 7 344 97817 65 0 1 4 0 5 151 31 0 51 0 1 59 chain 34109 chr15 102531392 + 72850172 72850678 L1PA16 3655 - 1685 2209 77471 34 2 1 41 14 18 37 2 0 18 0 2 24 0 2 105 9 21 51 5 0 124 0 6 40 chain 27593 chr15 102531392 + 72995143 72995451 AluYa5 310 - 6 310 94368 178 2 0 28 3 1 97 chain 72987 chr15 102531392 + 73000640 73001667 MER11A 1151 + 0 1151 47032 55 0 99 66 7 11 63 4 0 32 0 2 36 0 6 18 0 1 75 1 0 76 9 13 30 5 17 235 41 24 159 4 15 36 0 7 75 chain 32813 chr15 102531392 + 73033210 73033729 L1PB 1623 + 1028 1524 79509 34 0 4 140 10 5 50 0 4 39 21 6 136 1 0 7 2 1 28 10 6 13 5 1 14 1 0 8 chain 23068 chr15 102531392 + 73051291 73051566 AluSg7 307 - 21 297 115312 154 0 1 121 chain 12890 chr15 102531392 + 73065357 73065552 MER30 238 - 0 205 148672 39 0 3 59 2 0 9 16 25 70 chain 40542 chr15 102531392 + 73081569 73082090 MER41C 542 - 0 542 68529 212 0 21 160 1 0 99 0 1 49 chain 163184 chr15 102531392 + 73098685 73100461 SVA_D 2077 - 17 2077 22923 578 0 98 164 0 1 133 0 183 470 0 2 431 chain 66491 chr15 102531392 + 73135536 73136316 L1PA6 6164 - 2 782 49875 152 4 3 180 0 1 138 0 1 20 1 0 285 chain 11686 chr15 102531392 + 73155973 73156372 MLT1C 463 + 6 435 153535 16 4 6 22 13 14 38 41 42 21 7 0 6 56 78 13 69 80 93 chain 9477 chr15 102531392 + 73188252 73188364 L1PA5 6144 + 6029 6140 163171 97 1 0 14 chain 49322 chr15 102531392 + 73203325 73203866 L1PA3long 6157 - 1 542 59502 541 chain 32964 chr15 102531392 + 73206014 73206483 MLT2A1 477 - 0 477 79267 6 0 4 29 52 51 214 1 5 27 0 1 140 chain 11467 chr15 102531392 + 73219987 73220300 L1PB4 2604 - 52 218 154442 28 6 5 37 146 0 96 chain 44150 chr15 102531392 + 73255206 73255718 MER9a3 513 - 0 513 64009 68 2 0 334 0 1 89 1 3 18 chain 2647 chr15 102531392 + 73271765 73271957 L1ME1 1623 + 873 1069 231041 15 7 11 22 2 0 6 120 122 20 chain 29809 chr15 102531392 + 73277991 73278359 THE1D-int 1627 - 5 376 85409 302 0 3 66 chain 6157 chr15 102531392 + 73281156 73281233 MLT1B 390 + 304 381 183924 77 chain 25168 chr15 102531392 + 73325100 73325390 AluY 311 + 0 285 103915 126 5 0 159 chain 22313 chr15 102531392 + 73394447 73394717 AluSx4 309 + 20 291 118861 20 1 2 249 chain 69779 chr15 102531392 + 73424752 73425879 L1PB1 5432 + 4339 5422 48481 138 0 4 148 1 0 76 0 2 103 1 2 144 6 8 41 1 0 98 3 0 13 20 3 15 1 0 12 32 25 49 2 1 15 1 0 45 1 0 15 67 50 24 1 0 20 2 1 13 4 3 15 chain 26038 chr15 102531392 + 73446579 73446986 L1MA3 4352 - 24 416 99865 11 1 0 29 1 0 5 1 0 25 2 0 11 0 1 127 38 26 109 0 1 47 chain 37447 chr15 102531392 + 73459219 73459626 L1PA5 6144 + 5737 6144 72895 407 chain 15615 chr15 102531392 + 73459628 73459817 LTR39 781 - 554 742 139535 184 1 0 4 chain 15083 chr15 102531392 + 73474823 73475183 THE1B 368 - 0 368 141077 56 7 6 66 150 159 81 chain 84585 chr15 102531392 + 73505647 73508270 L1PB1 5432 - 19 2601 10625 9 1 0 9 0 3 20 1 0 26 24 19 12 10 1 13 2 0 5 1 0 16 0 2 9 1 0 32 6 5 10 3 2 50 3 1 11 19 14 9 1 0 21 3 0 9 1 2 50 11 11 338 0 4 70 2 0 5 8 12 36 19 0 7 0 8 185 0 1 207 1 0 181 12 7 58 1 0 191 3 7 275 1 0 162 0 1 4 7 4 108 1 0 313 0 3 5 4 0 8 2 0 11 chain 555244 chr15 102531392 + 73508285 73514411 L1PA3long 6157 - 10 6147 796 839 0 4 950 0 4 355 0 1 731 0 4 1450 4 0 412 0 1 78 0 1 1307 chain 91292 chr15 102531392 + 73514743 73517574 L1PB1 5432 - 2601 5399 10625 62 0 3 175 0 5 60 40 12 21 3 0 131 4 6 140 21 6 154 0 12 441 8 13 193 15 0 103 13 14 6 1 0 267 10 1 115 7 8 253 16 19 22 3 7 91 0 3 29 0 1 52 3 0 149 0 1 91 1 0 4 5 6 122 chain 38586 chr15 102531392 + 73559740 73560163 L1PA4 6152 - 9 433 71311 139 0 1 284 chain 2933 chr15 102531392 + 73643300 73643333 U2 167 - 134 167 226442 33 chain 16926 chr15 102531392 + 73665410 73665631 MER30 238 + 0 238 135780 107 4 24 69 3 0 38 chain 12126 chr15 102531392 + 73690692 73690827 AluYb9 318 + 20 154 151708 33 1 0 101 chain 528545 chr15 102531392 + 73740041 73746466 L1PA7 6471 + 5 6467 4351 189 3 4 5 1 0 37 18 26 71 1 0 65 8 0 4 3 0 390 0 1 317 2 7 636 0 2 249 3 1 307 0 9 120 3 5 256 5 9 761 1 3 5 2 0 17 5 6 41 3 7 454 2 0 919 0 1 110 0 1 579 2 5 33 0 11 607 11 12 180 chain 12962 chr15 102531392 + 73799644 73799814 MER30 238 + 39 238 148384 49 0 3 19 2 28 100 chain 557313 chr15 102531392 + 73800786 73806811 L1PA2 6032 - 2 6032 577 844 0 4 4817 0 1 364 chain 7346 chr15 102531392 + 73811329 73811445 L1MB2 1706 + 982 1086 175119 80 17 5 19 chain 19352 chr15 102531392 + 73817239 73817495 HSMAR2 1300 + 578 837 129064 69 7 10 180 chain 60272 chr15 102531392 + 73824326 73824984 L1PA2 6032 - 0 660 52697 14 0 2 644 chain 321090 chr15 102531392 + 73824984 73828546 L1HS 6032 + 1471 5048 12552 1591 1 5 64 0 4 424 0 1 672 0 4 20 0 1 782 0 1 8 chain 63264 chr15 102531392 + 73838969 73840060 L1MA2 4263 + 3117 4076 51336 42 1 0 25 163 27 96 1 0 144 0 16 100 3 0 17 6 2 38 2 9 29 1 0 134 13 10 126 9 12 11 12 10 93 7 0 18 chain 14664 chr15 102531392 + 73854474 73854692 Tigger4a 237 - 0 210 142377 64 0 1 101 17 15 19 7 0 10 chain 3287 chr15 102531392 + 73855205 73855245 Tigger4b 360 - 0 40 219252 40 chain 21374 chr15 102531392 + 73871376 73871635 AluY 311 + 38 299 122605 5 1 0 88 0 2 137 0 1 28 chain 11537 chr15 102531392 + 73872572 73872724 L1PA8 5853 + 5703 5853 154157 37 2 1 19 1 0 93 chain 15128 chr15 102531392 + 73875193 73875393 MLT2A1 477 + 220 459 140977 104 1 0 67 12 52 16 chain 7081 chr15 102531392 + 73902734 73902836 L1MA5A 2387 - 174 271 176882 32 3 0 26 2 0 39 chain 34157 chr15 102531392 + 73931912 73932324 LTR3B 427 + 0 411 77405 156 1 3 170 9 6 76 chain 27533 chr15 102531392 + 73944990 73945288 AluYf4 310 + 0 298 94563 298 chain 12621 chr15 102531392 + 73964779 73964929 MSTA 426 + 257 407 149764 150 chain 66810 chr15 102531392 + 74023703 74024967 LTR12C 1709 - 0 1625 49726 12 15 19 32 1 0 12 15 13 53 14 13 11 30 30 35 165 192 59 11 4 15 24 0 84 0 288 42 0 37 287 14 11 72 10 53 43 19 18 64 7 8 118 chain 3949 chr15 102531392 + 74048910 74048954 MIRc 230 + 63 107 208140 44 chain 17900 chr15 102531392 + 74076027 74076329 THE1C 375 + 29 330 133099 58 0 1 19 8 7 54 1 0 11 37 34 11 4 7 99 chain 34398 chr15 102531392 + 74077802 74078277 LTR2B 499 - 0 490 77058 182 1 0 8 12 13 166 0 19 30 10 7 60 1 0 5 chain 4290 chr15 102531392 + 74103204 74103254 MIR 256 - 142 192 203350 50 chain 22401 chr15 102531392 + 74139725 74140090 THE1C 375 + 13 375 118477 30 14 11 13 14 0 10 23 38 123 2 1 136 chain 22711 chr15 102531392 + 74172847 74173122 AluSc 308 + 18 292 117028 46 2 0 171 0 1 56 chain 3730 chr15 102531392 + 74196800 74196843 MER63A 208 + 113 156 211468 43 chain 59329 chr15 102531392 + 74255363 74256101 MER4E 760 + 27 753 53205 77 0 6 109 0 1 149 11 0 75 1 0 162 0 1 51 20 12 83 chain 92751 chr15 102531392 + 74265919 74267326 LTR12C 1709 + 0 1702 38732 15 6 15 8 0 4 248 9 6 42 0 43 269 0 278 181 12 9 90 51 20 50 1 0 4 42 43 85 1 0 188 56 55 49 chain 26093 chr15 102531392 + 74289253 74289669 MER51A 677 - 20 677 99655 120 3 4 6 0 1 9 8 7 65 0 33 27 42 249 136 chain 10573 chr15 102531392 + 74292568 74293034 MER2 342 - 64 206 157942 56 324 0 86 chain 94726 chr15 102531392 + 74344706 74346221 LTR12C 1709 + 0 1709 38157 24 9 18 8 0 1 198 55 56 33 0 43 83 15 10 245 0 118 234 0 47 97 20 13 54 20 1 15 94 93 177 18 28 26 13 10 77 chain 5058 chr15 102531392 + 74353143 74353350 L1M1 2793 + 665 847 194553 15 3 0 22 98 77 23 1 0 24 4 5 8 1 0 8 chain 38489 chr15 102531392 + 74410412 74410835 MER11C 1089 - 16 439 71453 423 chain 23739 chr15 102531392 + 74541271 74541927 LTR71B 605 + 0 347 111842 85 2 0 44 18 23 21 0 2 99 315 0 50 0 1 22 chain 203525 chr15 102531392 + 74646880 74649685 HERVH-int 3825 + 0 2991 18958 333 1 0 76 6 3 6 0 2 37 27 301 22 66 0 45 1 0 249 2 10 14 4 6 25 1 4 93 12 0 3 16 0 68 0 2 5 12 10 117 9 0 152 28 27 461 19 24 874 7 8 14 chain 4366 chr15 102531392 + 74653261 74653330 MER41-int 2638 + 335 399 202386 26 0 2 30 7 0 6 chain 36742 chr15 102531392 + 74654576 74656679 MER51-int 1546 + 8 1542 73894 11 1 0 10 2 1 22 47 23 73 2 1 37 6 0 8 10 0 16 308 177 22 218 207 77 0 11 86 22 16 14 839 476 114 12 0 27 31 17 88 chain 7767 chr15 102531392 + 74665141 74665317 ORSL-2b 485 - 117 327 172498 43 66 100 67 chain 4587 chr15 102531392 + 74705083 74705138 L1MD3 1191 - 131 186 199776 55 chain 144957 chr15 102531392 + 74771424 74773250 LTR12C 1709 - 0 1709 25333 481 0 4 106 3 1 5 1 0 49 78 0 226 1 0 79 0 2 49 41 0 128 9 8 308 0 1 262 chain 5726 chr15 102531392 + 74772069 74772147 LTR12C 1709 - 728 806 91535 78 chain 2498 chr15 102531392 + 74772502 74772531 LTR12C 1709 - 843 872 113042 29 chain 7724 chr15 102531392 + 74779905 74780028 Tigger1 2417 + 2220 2336 172760 27 7 4 14 4 0 71 chain 9388 chr15 102531392 + 74788590 74788696 MER30 238 - 0 106 163620 106 chain 28984 chr15 102531392 + 74795687 74795995 AluYb8 318 + 1 309 89073 308 chain 24976 chr15 102531392 + 74800123 74800429 AluSp 311 - 0 304 104929 17 2 0 30 0 1 138 1 0 118 chain 3632 chr15 102531392 + 74800437 74800481 MER45A 178 + 124 168 213119 44 chain 8790 chr15 102531392 + 74847975 74848115 Tigger1 2417 - 800 939 166706 30 20 19 90 chain 4857 chr15 102531392 + 74854400 74854458 MER47A 366 + 241 299 196709 58 chain 25007 chr15 102531392 + 74864162 74864470 AluSq2 311 + 0 304 104750 128 5 1 175 chain 25334 chr15 102531392 + 74893758 74894053 AluSp 311 + 5 300 103050 295 chain 16453 chr15 102531392 + 74936777 74936990 L1PA7 6471 + 6235 6454 137054 73 8 16 73 3 1 56 chain 3822 chr15 102531392 + 74953343 74953391 L1MB3 1562 - 7 54 210051 32 1 0 15 chain 22839 chr15 102531392 + 74961430 74961703 AluSp 311 + 1 301 116398 50 0 24 29 0 3 194 chain 3254 chr15 102531392 + 74962718 74962756 tRNA-Gly-GGA 38 - 0 38 219928 38 chain 23790 chr15 102531392 + 74965905 74966198 AluY 311 + 10 302 111528 121 3 0 146 1 3 22 chain 6725 chr15 102531392 + 74967986 74968061 AluY 311 + 47 122 179505 75 chain 14159 chr15 102531392 + 74968072 74968239 AluY 311 + 133 300 144013 167 chain 27568 chr15 102531392 + 74981859 74982164 AluYk4 311 - 6 311 94442 305 chain 24602 chr15 102531392 + 74991338 74991623 AluSp 311 - 16 301 106985 285 chain 19405 chr15 102531392 + 75000418 75000686 AluSq2 311 + 10 294 128930 123 28 44 117 chain 3775 chr15 102531392 + 75015694 75015737 MIRb 242 - 131 174 210735 43 chain 141474 chr15 102531392 + 75020586 75022174 SVA_D 2077 + 0 2076 25904 35 0 7 12 0 1 487 0 40 330 0 440 36 0 1 4 9 8 675 chain 22163 chr15 102531392 + 75030646 75030988 THE1B 368 - 0 368 119531 18 0 2 104 40 50 22 1 0 104 9 24 44 chain 24025 chr15 102531392 + 75059314 75059624 AluSg 306 + 4 306 110185 234 6 0 55 2 0 13 chain 3744 chr15 102531392 + 75060962 75061003 L1PA3long 6157 - 11 52 211276 41 chain 11237 chr15 102531392 + 75170561 75170706 LTR8 732 + 571 715 155270 75 1 0 69 chain 11632 chr15 102531392 + 75172340 75172494 LTR26B 539 - 334 487 153766 99 1 0 54 chain 4254 chr15 102531392 + 75173142 75173201 LTR23 429 + 232 292 203829 45 1 2 13 chain 19020 chr15 102531392 + 75179764 75180057 THE1D 372 - 64 372 130065 47 1 2 32 22 23 9 6 0 6 2 20 6 0 1 162 chain 67769 chr15 102531392 + 75180143 75180885 SVA_D 2077 - 0 968 49338 267 0 1 267 0 225 208 chain 23286 chr15 102531392 + 75230747 75231041 AluSp 311 + 2 289 114276 38 1 0 67 1 0 46 12 7 129 chain 4441 chr15 102531392 + 75237573 75237668 MSTD 398 - 117 237 201434 43 10 0 12 0 1 4 14 48 12 chain 7423 chr15 102531392 + 75266702 75266791 Charlie1b 519 + 191 280 174635 89 chain 7825 chr15 102531392 + 75274837 75274932 FRAM 166 + 71 166 172156 95 chain 7997 chr15 102531392 + 75275617 75275717 HY3 101 - 2 101 171081 37 1 0 62 chain 22484 chr15 102531392 + 75297541 75297818 AluSp 311 + 20 299 118088 154 1 3 122 chain 5124 chr15 102531392 + 75317179 75317245 MER2 342 - 127 193 193836 66 chain 15159 chr15 102531392 + 75358523 75358865 LTR19C 757 - 448 757 140881 110 1 0 6 81 52 32 5 2 11 5 2 4 1 0 29 1 0 13 2 0 6 3 7 8 0 3 24 chain 13996 chr15 102531392 + 75373750 75373925 AluSc5 308 + 0 308 144592 19 0 133 156 chain 274657 chr15 102531392 + 75376123 75379275 L1P2 5180 - 928 4084 14942 556 0 1 512 1 0 177 0 1 568 0 3 115 2 0 111 0 2 1110 chain 23922 chr15 102531392 + 75388813 75389086 AluY 311 + 26 300 110795 106 0 1 167 chain 106897 chr15 102531392 + 75407466 75408851 LTR12C 1709 - 0 1709 35004 84 7 6 313 0 4 74 7 11 99 9 6 13 14 5 67 0 278 280 1 0 5 0 1 79 5 48 40 4 5 21 8 14 62 0 1 193 chain 21727 chr15 102531392 + 75409553 75409954 LTR14A 344 - 0 344 121296 72 0 1 4 0 5 22 11 14 77 0 8 30 31 0 58 41 0 8 3 0 9 0 1 35 chain 16287 chr15 102531392 + 75417869 75418298 MER30 238 + 0 237 137512 96 1 3 18 205 14 68 3 0 38 chain 29437 chr15 102531392 + 75434177 75434487 AluYb9 318 + 0 310 86915 310 chain 4038 chr15 102531392 + 75437047 75437089 MER52D 1964 - 757 799 206811 42 chain 51382 chr15 102531392 + 75438738 75441244 MER41-int 2638 + 673 1873 58040 44 1805 496 69 36 33 5 0 3 27 0 3 156 1 0 36 0 2 121 1 0 205 chain 28452 chr15 102531392 + 75457668 75457983 AluYa5 310 - 0 310 91362 187 4 0 26 1 0 97 chain 29172 chr15 102531392 + 75457983 75458436 HSMAR1 1287 - 38 539 88188 78 0 44 78 4 5 63 10 6 38 24 28 94 13 16 51 chain 32388 chr15 102531392 + 75458436 75459221 LTR19A 502 - 0 502 80210 36 8 9 12 319 0 43 15 12 76 0 1 76 6 42 123 5 6 66 chain 13173 chr15 102531392 + 75462078 75462527 HUERS-P1-int 2401 + 154 481 147575 12 9 4 16 0 3 12 9 0 4 45 0 29 1 0 8 6 1 34 4 0 14 11 8 14 17 4 10 14 6 12 39 14 13 1 0 13 11 10 33 3 0 7 1 0 38 1 0 8 chain 38977 chr15 102531392 + 75482760 75483268 MER9a3 513 + 0 513 70771 18 0 2 86 4 5 68 10 11 239 4 5 79 chain 34727 chr15 102531392 + 75511560 75512002 LTR2B 499 - 0 465 76576 50 0 1 55 0 4 72 1 0 10 0 1 176 0 19 46 1 0 31 chain 25162 chr15 102531392 + 75590335 75590636 AluY 311 + 0 296 103951 126 5 0 170 chain 3796 chr15 102531392 + 75596753 75596822 L1M1 2793 - 1946 2014 210438 8 1 0 8 4 5 24 1 0 23 chain 80531 chr15 102531392 + 75615632 75616593 LTR5B 1012 - 0 1000 43378 190 2 0 311 0 1 8 0 26 339 0 14 111 chain 12450 chr15 102531392 + 75627394 75627563 MER2 342 + 143 315 150460 45 0 1 105 3 5 16 chain 12050 chr15 102531392 + 75691219 75691372 L1PA8 5853 + 5698 5849 151981 42 2 1 21 1 0 87 chain 21857 chr15 102531392 + 75701809 75702084 AluSc8 310 + 24 301 120795 99 0 3 8 13 12 155 chain 4845 chr15 102531392 + 75710964 75711068 MLT1A1 405 + 295 390 196843 23 11 0 21 20 22 29 chain 24526 chr15 102531392 + 75716492 75716786 AluSp 311 + 1 293 107403 77 2 0 215 chain 3912 chr15 102531392 + 75736362 75736405 Looper 901 - 720 763 208673 43 chain 26785 chr15 102531392 + 75764518 75764830 AluYf4 310 + 0 310 97031 209 2 0 101 chain 121125 chr15 102531392 + 75773175 75775136 SVA_F 1814 + 335 1812 30660 429 0 40 66 269 0 10 0 1 11 0 1 9 0 1 8 0 1 24 2 4 7 0 15 39 1 0 10 1 0 117 2 49 10 1 0 17 0 1 12 1 0 391 320 0 204 chain 6866 chr15 102531392 + 75773699 75773817 SVA_F 1814 + 1089 1209 152975 23 1 3 6 0 1 10 1 0 77 chain 4934 chr15 102531392 + 75773838 75773915 SVA_F 1814 + 893 1085 124089 28 0 114 36 0 1 13 chain 38041 chr15 102531392 + 75776046 75776540 LTR3B_ 500 + 0 498 72075 302 0 2 30 0 3 11 6 4 115 1 2 29 chain 29567 chr15 102531392 + 75777692 75778010 AluYb8 318 - 2 318 86354 198 2 0 118 chain 130946 chr15 102531392 + 75795280 75797809 SVA_D 2077 + 338 2073 27876 558 1027 202 158 32 0 124 0 49 18 1 12 220 0 3 391 chain 29081 chr15 102531392 + 75795902 75796364 SVA_F 1814 + 962 1291 88635 160 135 0 51 0 3 98 1 0 17 chain 8444 chr15 102531392 + 75796062 75796195 SVA_F 1814 + 881 931 102703 1 83 0 49 chain 4695 chr15 102531392 + 75796067 75796126 SVA_F 1814 + 887 943 194151 43 3 0 13 chain 2785 chr15 102531392 + 75796433 75796599 SVA_F 1814 + 847 995 163340 8 1 0 29 1 2 59 35 17 33 chain 19804 chr15 102531392 + 75796600 75796819 SVA_F 1814 + 999 1219 127802 215 0 1 4 chain 1661 chr15 102531392 + 75797023 75797048 SVA_D 2077 + 1432 1457 135564 25 chain 20931 chr15 102531392 + 75800113 75800357 AluSx4 309 + 10 255 124175 204 0 1 40 chain 13982 chr15 102531392 + 75816301 75816456 L1PA4 6152 + 5996 6151 144641 155 chain 29745 chr15 102531392 + 75835195 75835539 L1PA4 6152 - 0 348 85672 6 0 5 7 1 0 330 chain 24657 chr15 102531392 + 75844458 75844775 AluSp 311 + 1 309 106687 124 9 0 184 chain 115115 chr15 102531392 + 75850839 75852129 SVA_C 1631 + 0 1631 32750 17 0 3 664 0 40 7 0 3 39 0 296 367 1 0 195 chain 104046 chr15 102531392 + 75878651 75879856 L1PA6 6164 - 2 1216 35723 6 4 0 137 5 0 7 6 25 847 1 0 192 chain 24872 chr15 102531392 + 75881948 75882667 L1MA3 4352 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76101427 MER85 139 + 15 96 180814 27 0 1 53 chain 22073 chr15 102531392 + 76106542 76106902 MSTB 430 - 10 396 119909 100 8 13 95 5 15 25 6 20 8 4 0 73 15 16 21 chain 24480 chr15 102531392 + 76125438 76125731 AluSx1 309 + 11 309 107658 234 0 5 59 chain 72035 chr15 102531392 + 76163194 76164163 LTR5_Hs 974 - 0 974 47464 103 20 18 19 8 15 67 8 0 7 0 8 81 12 11 155 11 11 11 0 1 181 0 1 118 1 0 167 chain 24364 chr15 102531392 + 76187265 76187537 AluY 311 + 20 293 108294 112 0 1 160 chain 284676 chr15 102531392 + 76202118 76205457 L1PA7 6471 - 1 3353 14373 12 0 9 312 1 0 524 0 4 1128 0 1 268 0 2 33 14 4 136 0 3 427 0 1 53 0 4 431 chain 27565 chr15 102531392 + 76228133 76228427 AluYk11 308 - 14 308 94454 294 chain 333701 chr15 102531392 + 76266033 76270108 L1P3 4156 - 17 4150 12062 24 2 1 7 2 0 503 0 1 24 0 1 179 0 1 30 1 8 263 0 4 203 0 4 246 2 1 9 0 2 109 0 2 451 4 0 108 0 1 172 1 16 11 0 2 39 0 1 455 0 6 23 0 4 377 0 1 219 5 13 214 0 3 81 1 0 59 16 20 235 chain 5812 chr15 102531392 + 76271212 76271280 U4 144 - 76 144 187019 68 chain 36518 chr15 102531392 + 76276713 76277135 L1PA7 6471 + 6045 6467 74216 422 chain 20190 chr15 102531392 + 76297197 76298180 Tigger2 2703 - 0 344 126559 15 7 4 10 14 10 128 0 4 55 632 0 18 4 1 44 21 20 35 chain 520040 chr15 102531392 + 76305694 76312144 L1PA7 6471 - 7 6471 5158 5 3 0 149 0 2 57 10 14 423 0 1 63 2 1 127 2 1 947 0 2 78 0 1 14 0 1 4 1 0 265 9 8 23 5 2 690 0 3 21 5 13 26 1 0 13 2 1 43 1 2 360 0 4 117 0 1 68 0 3 21 7 11 211 1 0 27 14 0 56 1 3 228 0 5 15 0 1 169 0 4 104 0 4 273 3 0 5 1 5 358 0 1 107 0 1 343 1 2 175 15 12 365 1 2 30 36 8 108 0 15 33 0 1 208 chain 7788 chr15 102531392 + 76317839 76317933 L1M2c 2366 + 1734 1828 172364 94 chain 27775 chr15 102531392 + 76336336 76336642 AluYb8 318 - 17 318 93780 169 5 0 132 chain 93291 chr15 102531392 + 76336647 76338421 L1MA3 4352 + 2935 4352 38565 33 0 1 103 1 0 10 2 1 49 0 3 36 317 0 108 32 3 19 0 1 40 0 1 44 18 17 35 0 3 159 0 1 8 10 9 12 0 15 259 2 0 44 5 7 133 64 36 54 1 0 23 0 2 56 3 2 18 1 3 5 1 0 26 1 0 14 1 0 5 5 2 17 chain 28009 chr15 102531392 + 76343346 76343645 AluYa5 310 - 11 310 92972 299 chain 8357 chr15 102531392 + 76359240 76359379 MER20 218 - 58 184 169088 63 26 13 50 chain 10721 chr15 102531392 + 76360834 76361160 MLT1A 405 + 36 389 157315 29 127 154 54 33 34 6 0 1 6 1 0 14 1 0 55 chain 3502 chr15 102531392 + 76379118 76379155 MER51A 677 - 441 478 215342 37 chain 517872 chr15 102531392 + 76385479 76391876 L1PA7 6471 - 1 6471 5389 52 6 5 88 1 0 225 1 26 229 1 0 224 1 0 905 0 1 37 1 3 1020 3 0 18 0 1 50 0 3 167 0 4 312 0 4 388 8 9 46 0 1 10 9 1 353 0 3 33 6 4 152 0 13 27 0 4 156 6 0 307 0 4 299 11 29 4 0 1 35 0 4 99 0 1 356 13 18 130 1 0 32 3 0 104 1 0 61 1 0 7 1 0 139 7 14 8 0 1 243 chain 11887 chr15 102531392 + 76402665 76402860 MER30 238 + 0 238 152664 107 4 0 7 25 45 23 1 28 28 chain 26215 chr15 102531392 + 76480508 76481133 THE1C 375 - 19 375 99141 6 1 0 183 269 0 13 20 0 9 0 21 124 chain 23692 chr15 102531392 + 76534184 76534464 AluSc 308 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76687495 76689806 L1MA2 4263 - 158 2475 23690 47 7 0 12 3 4 76 1 0 9 2 1 150 8 5 139 1 0 74 8 4 33 3 4 59 0 1 53 0 3 132 1 0 12 0 5 23 1 6 84 11 15 40 4 8 73 22 27 96 1 2 88 1 0 32 20 21 122 3 6 4 1 0 189 1 5 212 17 0 87 1 0 89 0 7 61 55 54 143 chain 3559 chr15 102531392 + 76703692 76703736 Tigger4a 237 - 190 234 214350 44 chain 3671 chr15 102531392 + 76707266 76707328 LTR67B 553 + 458 522 212375 30 8 10 24 chain 524468 chr15 102531392 + 76712975 76718871 L1PA5 6144 - 12 6141 4727 1499 0 3 1070 0 1 981 0 2 380 0 1 566 2 4 677 0 2 57 4 5 412 0 4 160 0 217 88 chain 50203 chr15 102531392 + 76748016 76748683 L1PA8 5853 - 0 670 58865 29 11 15 48 2 1 67 6 5 9 1 0 71 2 0 14 5 13 19 1 0 38 3 0 341 chain 96467 chr15 102531392 + 76776660 76778041 L1PA13 3608 + 2044 3516 37693 20 5 9 99 2 1 134 0 3 73 14 95 144 0 2 63 0 1 70 0 3 246 0 4 26 1 0 8 7 23 60 1 0 32 1 0 113 2 0 63 1 0 55 11 7 23 5 6 18 7 3 20 1 0 14 12 9 13 5 0 12 chain 5223 chr15 102531392 + 76781533 76781611 MADE1 96 - 2 96 192803 24 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76842082 L1PA4 6152 + 4841 6136 38221 528 1 190 219 0 1 89 0 9 126 1 2 131 chain 9605 chr15 102531392 + 76842108 76842232 L1MA6 2487 + 1498 1624 162572 87 1 0 5 0 3 31 chain 8522 chr15 102531392 + 76851219 76851380 THE1D 372 + 0 153 168181 49 9 0 20 32 33 51 chain 22421 chr15 102531392 + 76871361 76871630 AluY 311 + 36 306 118368 96 0 1 173 chain 103018 chr15 102531392 + 76879119 76881108 L1PBa1 4058 - 33 1710 35982 27 1 0 19 1 0 7 1 0 4 1 0 6 12 9 10 5 4 16 14 9 19 2 0 15 13 0 29 3 1 62 1 0 5 0 1 38 3 1 42 1 0 28 6 8 15 15 31 65 4 0 119 2 1 47 3 0 6 0 11 37 3 0 7 0 3 219 28 27 28 6 16 137 322 0 11 3 5 114 0 1 4 5 4 251 45 56 102 chain 30998 chr15 102531392 + 76882851 76883340 L1PB4 2604 + 2058 2552 82516 25 0 2 212 15 16 61 18 16 22 0 1 15 1 0 61 1 0 4 18 23 36 chain 527060 chr15 102531392 + 76884865 76891289 L1PA7 6471 + 0 6470 4497 18 0 1 393 0 1 290 7 8 310 1 0 1656 1 0 4 1 2 89 3 18 449 0 1 159 0 1 39 0 5 319 0 3 63 9 0 339 2 6 83 0 1 139 0 1 273 0 4 149 0 1 35 0 1 198 0 3 540 1 0 98 0 2 140 4 3 467 13 14 57 0 8 23 6 10 46 chain 543111 chr15 102531392 + 76895378 76901511 L1PA4 6152 - 1 6150 2326 251 0 4 285 0 1 313 0 3 8 0 4 560 1 0 556 0 4 909 0 3 462 0 4 69 4 5 2130 1 0 118 9 3 88 1 0 4 0 1 364 chain 36033 chr15 102531392 + 76904878 76905461 L1PA13 3608 + 2984 3541 74858 92 0 3 49 1 0 31 15 14 100 2 0 31 1 0 32 1 0 55 1 0 5 2 0 47 2 0 5 2 0 20 1 0 19 0 3 7 17 7 14 1 0 6 7 1 9 1 0 7 chain 12927 chr15 102531392 + 76918236 76918430 MER30 238 - 3 212 148521 27 0 1 17 4 1 51 2 0 7 5 24 81 chain 286892 chr15 102531392 + 76921058 76925109 L1PA10 4194 - 44 3768 14229 34 3 0 257 0 1 59 0 4 60 0 9 288 1 0 250 0 1 39 0 1 187 2 0 24 1 0 154 43 6 142 5 6 398 1 5 391 0 4 71 0 2 457 0 5 353 12 14 208 0 1 18 317 0 217 2 0 24 10 11 23 chain 3553 chr15 102531392 + 76929637 76929676 L1MB8 1703 - 478 517 214486 39 chain 41026 chr15 102531392 + 76932597 76933057 HERVK11D-int 613 + 153 613 67865 135 1 0 93 0 1 231 chain 77341 chr15 102531392 + 76933057 76933930 MER11D 897 + 0 897 44808 593 1 24 160 0 1 119 chain 22050 chr15 102531392 + 76946490 76946757 AluY 311 + 29 291 120015 93 10 5 164 chain 24504 chr15 102531392 + 76963838 76964125 AluY 311 + 10 298 107520 269 0 1 18 chain 3096 chr15 102531392 + 76975730 76976140 L1PA13 3608 + 218 595 223010 20 205 200 7 2 0 15 127 102 21 1 0 12 chain 113289 chr15 102531392 + 76979784 76981173 L1PA7 6471 - 4 1406 33283 6 4 0 17 0 1 134 1 2 512 0 2 173 5 8 271 6 10 166 0 6 94 chain 35943 chr15 102531392 + 76996568 76996970 L1PA3long 6157 - 904 1305 74738 353 1 0 48 chain 82096 chr15 102531392 + 76996970 76997889 L1PA3long 6157 + 5230 6147 42725 588 2 0 329 chain 136569 chr15 102531392 + 77003951 77005460 L1PA3long 6157 - 672 2181 26730 1509 chain 61816 chr15 102531392 + 77005460 77006130 L1PA3long 6157 + 5487 6157 51988 670 chain 454130 chr15 102531392 + 77012271 77017419 L1PA4 6152 - 0 6152 8607 305 0 1 544 0 4 2133 1 0 471 2 0 262 0 3 41 0 4 182 0 2 285 7 4 816 0 996 99 chain 22068 chr15 102531392 + 77021352 77021720 MLT2A1 477 + 154 477 119930 15 4 1 33 0 1 179 0 2 12 5 0 10 63 23 47 chain 77329 chr15 102531392 + 77024546 77025522 LTR13 1007 + 0 1007 44816 73 2 0 308 4 5 98 0 25 182 0 4 116 1 2 84 2 1 10 0 5 62 3 1 31 chain 19533 chr15 102531392 + 77028981 77029220 7SK 245 + 0 240 128558 189 5 6 45 chain 26526 chr15 102531392 + 77040319 77040630 AluSp 311 - 2 311 97947 16 2 0 293 chain 82470 chr15 102531392 + 77061370 77062705 L1PA6 6164 + 5192 6162 42556 38 0 1 85 326 0 99 0 1 33 0 1 100 39 0 604 3 0 8 chain 503023 chr15 102531392 + 77072266 77078379 L1PA6 6164 + 13 6162 6667 50 3 5 57 18 21 662 0 17 418 1 0 175 6 5 4 0 1 433 0 1 349 1 3 120 0 1 143 0 6 712 21 21 476 3 0 212 0 2 342 0 1 94 1 0 553 0 6 415 0 4 32 2 0 95 0 1 183 0 1 277 0 1 92 0 5 5 11 6 136 5 0 6 chain 3526 chr15 102531392 + 77092237 77092279 MER70A 477 + 340 382 214953 42 chain 16823 chr15 102531392 + 77099871 77100061 L1PA2 6032 - 0 188 136055 6 2 0 182 chain 183550 chr15 102531392 + 77110942 77113090 L1PA4 6152 + 0 6151 20621 278 0 1 740 0 1 95 2 3 46 0 3996 138 0 4 849 chain 38864 chr15 102531392 + 77118483 77118913 L1PA3long 6157 + 5727 6157 70928 430 chain 9728 chr15 102531392 + 77121270 77121434 L1PB2 3958 + 3680 3838 161946 48 20 17 8 2 0 22 1 0 63 chain 29866 chr15 102531392 + 77130067 77130594 L1PA15 4387 + 3829 4348 85226 11 1 2 4 1 0 36 10 17 34 1 0 71 0 4 96 1 0 26 1 0 53 4 3 13 10 6 10 1 0 41 17 14 44 12 7 8 2 0 19 chain 14299 chr15 102531392 + 77134383 77134573 MER2 342 + 84 279 143565 31 4 5 82 0 4 73 chain 19176 chr15 102531392 + 77134598 77134942 THE1D 372 + 0 342 129595 46 10 1 27 3 0 6 7 11 40 1 5 30 30 34 25 1 0 32 2 0 59 0 1 25 chain 174880 chr15 102531392 + 77136826 77139384 L1MA2 4263 + 1539 4097 21477 338 1 2 73 0 2 16 2 0 65 17 4 74 1 0 24 0 2 6 0 1 11 26 29 55 2 3 150 8 4 44 0 12 84 0 1 102 0 5 5 2 0 79 1 9 163 0 2 197 4 1 4 0 1 119 8 11 137 2 0 19 0 1 40 6 1 147 9 5 75 6 5 90 1 0 24 0 1 5 24 19 101 2 0 38 0 2 9 11 9 34 1 6 22 7 16 15 11 0 17 3 1 21 chain 18840 chr15 102531392 + 77142138 77142463 THE1D 372 - 52 371 130546 109 41 42 29 0 1 60 4 5 27 19 10 36 chain 28332 chr15 102531392 + 77146634 77147003 L1PREC2 3366 + 2405 2773 91830 15 0 1 57 1 0 245 0 1 23 7 5 21 chain 20167 chr15 102531392 + 77167943 77168213 LTR12C 1709 - 6 377 126626 78 5 4 99 5 107 83 chain 508027 chr15 102531392 + 77179525 77185674 L1PA6 6164 + 0 6162 6319 194 1 2 164 0 1 46 6 7 64 16 15 19 1 0 55 1 0 212 0 1 364 1 7 87 1 0 207 3 1 43 1 2 625 0 3 92 1 3 77 1 2 32 0 1 120 0 1 346 0 4 399 0 1 602 8 7 528 2 0 8 0 5 18 0 4 81 2 1 195 26 13 263 0 4 148 0 1 240 0 3 619 12 7 218 chain 102990 chr15 102531392 + 77191518 77192696 SVA_A 1864 + 15 1864 35990 175 1 2 407 0 666 165 0 4 430 chain 2909 chr15 102531392 + 77228465 77228656 MER2 342 + 29 211 226887 20 141 132 30 chain 21050 chr15 102531392 + 77237034 77237332 L1MA2 4263 - 158 457 123727 12 0 7 20 15 8 13 0 3 76 1 0 8 1 0 152 chain 3390 chr15 102531392 + 77244555 77244748 L1MC1 2226 - 31 202 217278 11 1 0 30 134 113 17 chain 11045 chr15 102531392 + 77246246 77246475 L1MB3 1562 - 500 714 156035 51 54 53 42 14 0 68 chain 32372 chr15 102531392 + 77250738 77251236 MER1A 529 - 0 487 80238 138 10 7 20 6 0 167 8 9 85 20 16 24 5 6 15 chain 40753 chr15 102531392 + 77261220 77261731 MER41C 542 - 7 542 68231 205 0 21 144 0 2 113 0 1 49 chain 19738 chr15 102531392 + 77272870 77273234 L1MA5 2750 - 906 1258 127987 39 33 34 53 5 4 29 19 18 117 7 5 22 9 0 31 chain 24608 chr15 102531392 + 77276859 77277155 AluSp 311 + 14 308 106946 289 2 0 5 chain 26419 chr15 102531392 + 77359147 77359540 MSTC 436 - 0 436 98340 55 0 3 5 13 21 32 17 35 34 2 0 74 1 17 160 chain 43936 chr15 102531392 + 77398483 77399394 PABL_A 660 - 7 660 64287 25 1 0 4 4 5 26 1 2 5 1 0 75 12 14 63 305 2 108 1 0 53 0 45 96 1 0 130 chain 10124 chr15 102531392 + 77427759 77427900 Tigger3 1187 - 71 210 159975 28 7 5 106 chain 25032 chr15 102531392 + 77427908 77428262 THE1B 368 + 0 368 104628 44 0 15 35 11 14 64 1 0 20 2 0 95 2 1 80 chain 36065 chr15 102531392 + 77428262 77428726 THE1B-int 1605 + 0 490 74811 171 0 1 4 1 0 116 5 6 132 1 26 34 chain 28734 chr15 102531392 + 77430184 77430538 THE1B 368 + 0 368 90191 44 0 15 113 1 0 196 chain 509616 chr15 102531392 + 77443225 77448986 L1PA4 6152 - 370 6146 6196 480 0 3 560 9 32 1426 1 14 7 8 0 1617 0 2 207 1 0 356 1 2 242 17 0 254 1 0 574 chain 27671 chr15 102531392 + 77460086 77460411 L1PA6 6164 - 4 329 94143 325 chain 144664 chr15 102531392 + 77467016 77468599 L1PA3long 6157 + 4568 6152 25376 1354 0 1 229 chain 19969 chr15 102531392 + 77494831 77495122 AluY 311 + 8 294 127240 12 4 1 102 35 32 52 0 1 86 chain 94621 chr15 102531392 + 77498167 77499184 L1PA2 6032 - 0 1017 38179 1017 chain 37887 chr15 102531392 + 77499184 77499598 L1PA2 6032 + 4595 5009 71772 414 chain 11995 chr15 102531392 + 77507770 77508019 MER2 342 - 63 325 152221 56 5 7 52 34 50 27 21 20 18 4 0 32 chain 2711 chr15 102531392 + 77508527 77508556 L1ME1 1623 - 1390 1419 230054 29 chain 9861 chr15 102531392 + 77520459 77520572 L1PA4 6152 - 0 113 161277 113 chain 106349 chr15 102531392 + 77527556 77529035 THE1C-int 1605 + 27 1599 35165 69 0 57 17 3 0 115 5 10 28 9 35 81 11 18 38 1 2 126 0 2 78 1 0 10 18 18 28 5 0 19 12 12 246 0 1 274 7 9 82 1 0 127 0 2 68 chain 210112 chr15 102531392 + 77549070 77551394 L1PA3long 6157 - 0 2327 18492 22 0 1 4 1 0 1464 0 1 344 0 1 80 0 1 409 chain 486615 chr15 102531392 + 77553006 77558604 L1PA3long 6157 + 1 6157 7492 93 0 526 84 8 15 699 2 13 8 0 1 19 0 1 865 0 1 189 0 6 662 1 0 505 2 0 125 1 2 81 0 2 421 1 2 1574 0 4 258 chain 24602 chr15 102531392 + 77562162 77562441 L1P1 4361 - 1367 1655 105028 241 0 9 38 chain 139046 chr15 102531392 + 77562441 77564283 L1PA5 6144 + 3952 6144 26290 315 0 1 202 244 593 180 6 6 375 0 1 186 1 0 333 chain 20162 chr15 102531392 + 77562972 77563198 L1PA5 6144 - 1456 1682 126635 226 chain 233585 chr15 102531392 + 77564284 77567648 L1PB1 5432 + 2141 5423 17110 164 0 1 24 0 1 43 0 4 115 3 0 90 0 1 124 0 1 190 1 0 115 1 0 78 5 6 135 1 0 38 4 0 318 0 1 62 15 12 5 0 3 39 34 26 23 8 3 58 0 1 140 0 1 233 0 1 14 12 14 198 0 1 142 0 4 34 0 5 20 0 1 9 0 3 142 61 7 21 1 2 19 6 5 45 0 1 102 2 0 117 3 2 8 2 1 24 1 0 5 2 1 12 20 14 50 2 1 16 1 0 44 4 3 12 23 12 18 25 20 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 6209 chr15 102531392 + 77570088 77570344 L1MC1 2226 + 1960 2184 183506 14 9 6 15 2 0 15 61 53 14 2 0 5 4 1 15 8 6 18 24 13 17 1 0 32 chain 42465 chr15 102531392 + 77578041 77578596 L1P1 4361 - 1058 1613 66055 11 9 6 39 0 3 22 0 4 285 9 1 154 0 4 26 chain 106234 chr15 102531392 + 77613012 77614227 L1PA4 6152 - 9 1229 35203 146 4 5 682 3 7 380 chain 194505 chr15 102531392 + 77614228 77616396 L1PA4 6152 + 2744 4910 19628 263 6 7 670 4 0 256 0 1 969 chain 19261 chr15 102531392 + 77643731 77644072 MER51B 395 + 0 394 129344 34 13 32 34 12 20 60 0 17 13 27 25 10 1 0 51 1 13 85 chain 24124 chr15 102531392 + 77690130 77690414 AluSp 311 + 11 289 109620 117 6 0 161 chain 129856 chr15 102531392 + 77698612 77700859 L1PB1 5432 + 3454 5417 28121 278 1 0 88 0 4 128 9 15 163 2 1 36 0 1 35 0 1 39 13 14 37 0 2 339 3 5 91 0 3 71 15 23 10 0 1 13 2 1 97 1 0 101 2 0 22 324 42 23 8 6 10 9 5 9 2 0 46 26 22 43 2 1 15 4 1 17 27 23 10 1 0 19 1 0 5 1 0 23 2 1 9 2 1 13 chain 22844 chr15 102531392 + 77714693 77714960 AluSg 306 + 16 285 116371 248 1 3 18 chain 2695 chr15 102531392 + 77718111 77718279 L1MB7 1623 + 1325 1480 230268 12 20 18 20 91 80 25 chain 7814 chr15 102531392 + 77798447 77798558 MER53 195 - 16 171 172221 61 4 0 14 0 48 32 chain 23544 chr15 102531392 + 77806074 77806355 AluSc 308 - 15 298 112886 16 1 3 264 chain 24538 chr15 102531392 + 77812937 77813217 AluSc5 308 - 17 297 107323 280 chain 15602 chr15 102531392 + 77814847 77815169 L1MC4 1079 + 147 458 139575 171 14 0 12 87 92 6 2 0 30 chain 22468 chr15 102531392 + 77883068 77883337 AluSx1 309 + 18 287 118164 269 chain 28835 chr15 102531392 + 77910920 77911236 AluYa5 310 - 0 310 89747 184 1 0 3 5 0 123 chain 3489 chr15 102531392 + 77984608 77984646 MIR 256 - 129 167 215519 38 chain 32294 chr15 102531392 + 78071615 78072123 MER1A 529 - 0 527 80371 58 12 13 280 48 49 43 5 6 35 8 24 19 chain 2798 chr15 102531392 + 78074049 78074095 MIRc 230 - 114 161 228753 17 5 6 24 chain 2890 chr15 102531392 + 78136179 78136214 MSTA 426 + 2 37 227197 35 chain 3471 chr15 102531392 + 78175038 78175076 MIRc 230 - 94 132 215790 38 chain 3156 chr15 102531392 + 78178603 78178671 MIRc 230 + 73 139 221801 16 9 11 32 4 0 7 chain 25542 chr15 102531392 + 78186542 78186867 LTR12C 1709 - 1371 1709 102042 77 6 7 207 0 12 35 chain 6082 chr15 102531392 + 78297171 78297263 MER8 282 - 145 282 184559 21 10 55 61 chain 9704 chr15 102531392 + 78362189 78362305 MLT1A0 366 + 222 338 162073 116 chain 13033 chr15 102531392 + 78370836 78371363 L1MA3 4352 + 4115 4333 148110 62 1 0 9 1 2 7 1 0 11 302 0 54 2 0 22 2 1 5 1 0 26 1 0 14 1 0 5 chain 25004 chr15 102531392 + 78399288 78399593 AluY 311 + 0 299 104756 126 6 0 173 chain 3047 chr15 102531392 + 78403349 78403381 MIR 256 - 125 157 224065 32 chain 24043 chr15 102531392 + 78410660 78410949 AluSg 306 + 8 299 110095 100 0 1 13 0 1 176 chain 30578 chr15 102531392 + 78413793 78414163 THE1C 375 + 0 375 83244 135 0 4 47 0 1 188 chain 25819 chr15 102531392 + 78444699 78445001 AluSp 311 - 9 311 100793 302 chain 4499 chr15 102531392 + 78470394 78470446 MIR 256 + 57 109 200787 52 chain 16531 chr15 102531392 + 78478362 78478542 L1PA3long 6157 - 3633 3813 136098 180 chain 331060 chr15 102531392 + 78478542 78482174 L1PA3long 6157 + 2515 6157 12160 57 0 4 207 1 2 1812 0 1 561 0 5 740 1 0 253 chain 60977 chr15 102531392 + 78531313 78532373 LTR17 781 - 6 781 52344 25 0 22 401 309 3 65 16 15 244 chain 118276 chr15 102531392 + 78537613 78539044 LTR12C 1709 - 0 1708 31700 246 13 11 33 6 7 184 0 4 106 9 6 121 0 278 498 7 6 208 chain 6061 chr15 102531392 + 78565770 78565842 L1PA5 6144 - 0 72 184733 72 chain 7959 chr15 102531392 + 78579244 78579398 L1MC2 1988 + 1708 1860 171277 32 34 36 71 6 2 11 chain 4402 chr15 102531392 + 78602259 78602313 MSTD 398 - 1 55 201901 54 chain 4890 chr15 102531392 + 78617285 78617376 MER81 114 + 32 114 196371 11 7 0 10 1 0 20 5 4 37 chain 43352 chr15 102531392 + 78641492 78642003 MER9a2 513 - 0 513 64988 55 0 1 320 9 10 127 chain 17307 chr15 102531392 + 78648812 78649037 AluSg7 307 + 72 295 134771 198 12 10 15 chain 521651 chr15 102531392 + 78668313 78674443 L1PA6 6164 - 5 6160 4998 138 4 5 243 0 1 2420 0 12 67 0 2 81 0 1 4 1 3 451 0 1 401 6 0 412 0 3 244 0 10 696 0 25 94 0 1 334 2 1 313 0 1 51 38 10 130 chain 5906 chr15 102531392 + 78674648 78674717 MER52C 1267 + 14 83 186137 69 chain 2317 chr15 102531392 + 78693205 78693261 Kanga1a 723 - 654 693 235143 14 18 1 24 chain 48929 chr15 102531392 + 78708951 78709561 LTR71B 605 - 0 605 59794 186 1 0 281 1 0 7 9 6 125 chain 5798 chr15 102531392 + 78743937 78744019 Tigger4a 237 + 0 104 187166 28 2 19 22 0 5 30 chain 23757 chr15 102531392 + 78761789 78762076 AluSp 311 + 10 292 111726 50 4 0 150 1 0 82 chain 29636 chr15 102531392 + 78767115 78767428 AluYb8 318 + 0 313 86111 313 chain 21000 chr15 102531392 + 78798947 78799215 LTR19B 566 - 0 271 123922 44 11 12 20 0 4 55 2 0 136 chain 5739 chr15 102531392 + 78808580 78808685 Tigger2 2703 - 237 346 187748 50 6 0 9 11 23 18 2 0 9 chain 67797 chr15 102531392 + 78812597 78813341 SVA_D 2077 - 16 1114 49324 519 0 352 152 0 2 73 chain 4318 chr15 102531392 + 78813783 78813856 MADE1 96 + 5 96 202988 21 1 2 21 6 23 24 chain 2572 chr15 102531392 + 78822869 78822948 MER3 215 + 27 113 232215 25 21 27 10 6 7 17 chain 25736 chr15 102531392 + 78860821 78861174 L1PA8 5853 - 0 347 101138 92 2 1 19 2 1 49 1 0 8 7 6 69 2 0 9 1 2 33 1 0 58 chain 22226 chr15 102531392 + 78866480 78866740 AluSp 311 + 40 300 119224 260 chain 545395 chr15 102531392 + 78899926 78906072 L1PA4 6152 + 2 6151 2024 578 1 0 23 0 6 127 1 0 98 17 0 402 1 0 209 0 4 905 0 2 227 0 2 674 0 5 401 0 1 502 0 1 185 0 4 530 1 0 122 1 0 1141 chain 13786 chr15 102531392 + 78906132 78906306 AluY 311 + 127 290 145313 155 11 0 8 chain 6660 chr15 102531392 + 78972683 78972858 Tigger4a 237 + 7 201 180003 21 17 0 12 14 31 10 13 0 42 0 35 20 10 0 10 0 7 6 chain 540324 chr15 102531392 + 79012176 79018192 L1PA3long 6157 + 2 6157 2769 151 13 14 609 0 128 344 0 1 958 0 2 1486 1 0 598 0 2 65 0 4 1139 0 1 637 0 1 15 chain 7870 chr15 102531392 + 79034280 79034397 MER5A 189 + 1 112 171870 44 12 6 61 chain 3326 chr15 102531392 + 79114967 79115004 MIRc 230 + 173 210 218456 37 chain 115927 chr15 102531392 + 79139032 79140400 LTR12C 1709 + 0 1698 32483 801 0 316 107 0 4 143 0 7 188 4 7 125 chain 3716 chr15 102531392 + 79152903 79152943 tRNA-Lys-AAG 49 + 0 40 211699 40 chain 5086 chr15 102531392 + 79157498 79157599 Charlie4a 502 - 133 239 194229 23 30 35 48 chain 15741 chr15 102531392 + 79163216 79163408 MER107 203 + 4 203 139142 141 4 0 12 0 11 35 chain 3116 chr15 102531392 + 79186122 79186159 MER58D 378 - 12 50 222631 9 0 1 28 chain 75055 chr15 102531392 + 79194654 79195581 LTR13A 966 - 0 966 45991 117 14 52 97 0 1 315 1 0 255 0 1 128 chain 5939 chr15 102531392 + 79204331 79204437 L1MA7 2200 + 1874 1978 185786 32 0 1 4 14 13 25 2 0 29 chain 24288 chr15 102531392 + 79249660 79249954 AluSp 311 - 18 311 108719 245 1 0 48 chain 7755 chr15 102531392 + 79251007 79251191 LTR39 781 + 264 473 172571 14 16 39 13 6 8 30 36 37 63 1 0 5 chain 6580 chr15 102531392 + 79261170 79261410 MER31B 477 + 252 387 180611 17 117 13 32 20 19 54 chain 24208 chr15 102531392 + 79261746 79262036 AluSg 306 + 16 306 109161 290 chain 14668 chr15 102531392 + 79268631 79268852 MER30 238 - 0 238 142367 30 0 1 50 2 0 11 10 32 7 4 0 107 chain 38212 chr15 102531392 + 79306410 79307438 L1PB1 5432 + 4806 5427 71823 7 7 0 31 16 5 193 0 6 56 0 1 9 3 0 26 1 0 6 1 0 12 19 13 48 1 0 12 6 5 45 1 0 15 3 0 6 16 6 19 367 4 17 2 0 22 1 0 21 1 0 13 1 0 19 1 0 4 chain 29278 chr15 102531392 + 79330100 79330463 MER1A 529 - 121 484 87655 363 chain 6329 chr15 102531392 + 79416893 79417217 MLT1H2 457 + 89 357 182560 77 228 172 19 chain 4430 chr15 102531392 + 79460754 79460804 LTR40b 463 - 65 115 201586 50 chain 11758 chr15 102531392 + 79488604 79488737 L1PA4 6152 + 6018 6151 153232 133 chain 4237 chr15 102531392 + 79491790 79491839 L1MA2 4263 - 224 273 204057 49 chain 3334 chr15 102531392 + 79509930 79509966 MLT1G1 539 - 260 296 218346 36 chain 11065 chr15 102531392 + 79521123 79521291 MER20 218 + 38 199 155945 44 9 6 68 8 4 39 chain 25422 chr15 102531392 + 79526961 79527316 THE1C 375 + 2 356 102586 85 3 4 16 8 7 38 0 1 34 2 0 169 chain 5320 chr15 102531392 + 79551569 79551745 MER5A 189 + 0 189 191825 26 0 9 38 95 99 17 chain 2573 chr15 102531392 + 79559530 79559644 MER5A1 166 - 9 165 232213 24 72 114 18 chain 327821 chr15 102531392 + 79564974 79568533 L1PA2 6032 + 2469 6032 12280 2713 0 4 846 chain 54054 chr15 102531392 + 79612159 79612838 LTR13 1007 - 324 1007 56323 68 5 10 158 3 4 6 1 0 51 4 5 308 2 0 73 chain 3912 chr15 102531392 + 79614108 79614175 MIRb 242 + 69 174 208661 38 11 49 18 chain 8472 chr15 102531392 + 79622041 79622160 LTR18B 584 + 460 570 168449 48 0 1 16 10 0 45 chain 80949 chr15 102531392 + 79630825 79631816 LTR13 1007 + 0 1007 43216 264 0 1 116 2 3 66 0 1 71 8 12 122 0 10 33 2 0 116 0 1 191 chain 39770 chr15 102531392 + 79642600 79643105 MLT2A2 560 - 37 560 69666 32 0 1 73 0 11 178 0 8 16 4 2 202 chain 35792 chr15 102531392 + 79643887 79644550 L1PB1 5432 + 4786 5422 75144 11 1 0 6 3 4 152 0 1 5 2 1 127 11 16 5 1 0 28 3 2 12 18 12 51 1 0 10 8 7 45 1 0 15 1 0 4 63 46 24 1 0 22 1 0 12 1 0 18 chain 4178 chr15 102531392 + 79653725 79653812 L1PB1 5432 + 5108 5214 204844 6 3 0 24 1 0 8 1 0 12 11 35 21 chain 4946 chr15 102531392 + 79653820 79653889 L1PB1 5432 + 5221 5289 195741 15 1 0 34 0 1 10 1 0 8 chain 2898 chr15 102531392 + 79653964 79654003 L1PB1 5432 + 5353 5391 227063 20 1 0 18 chain 22992 chr15 102531392 + 79654886 79655251 THE1B 368 + 0 368 115660 15 2 0 32 17 23 99 1 0 11 0 1 9 14 11 9 0 4 18 1 0 9 1 0 65 1 0 5 0 1 56 chain 27107 chr15 102531392 + 79656324 79656762 MER61D 487 - 0 485 95918 22 1 0 126 1 0 7 2 0 6 1 2 18 41 32 36 7 6 25 6 66 139 chain 13077 chr15 102531392 + 79658788 79659005 LTR39 781 - 565 781 147928 28 6 8 25 0 3 107 27 21 24 chain 27282 chr15 102531392 + 79669983 79670286 AluYk4 311 - 6 310 95334 107 0 1 196 chain 313627 chr15 102531392 + 79680781 79684921 L1PB1 5432 - 300 4446 12869 15 8 1 11 1 2 166 0 1 60 0 6 113 0 1 49 0 1 612 4 3 58 6 6 201 0 1 4 1 0 30 0 3 51 0 2 294 9 8 4 0 1 191 1 0 156 0 1 93 0 1 16 0 1 127 1 0 8 3 9 7 1 0 326 4 1 99 20 15 30 35 54 379 13 0 13 1 3 27 0 1 473 14 0 305 0 6 100 chain 18595 chr15 102531392 + 79694876 79695154 AluSg7 307 + 37 307 131241 95 37 29 146 chain 545876 chr15 102531392 + 79778129 79784158 L1PA3long 6157 - 1 6157 1962 766 1 0 2127 0 2 2019 1 0 338 4 132 461 2 0 158 0 1 152 chain 8641 chr15 102531392 + 79794131 79794298 MLT2B4 540 + 355 533 167533 16 3 4 25 2 0 5 0 2 51 14 29 7 1 0 11 4 0 28 chain 51055 chr15 102531392 + 79849623 79850181 L1PA5 6144 - 951 1509 58161 558 chain 74941 chr15 102531392 + 79850181 79851039 L1PA5 6144 + 5273 6126 46042 24 0 4 590 1 0 109 0 3 76 11 0 47 chain 39089 chr15 102531392 + 79853296 79853792 LTR10D 510 + 0 510 70618 70 12 7 14 0 17 58 1 2 94 0 1 247 chain 4417 chr15 102531392 + 79858897 79858945 U2 167 - 119 167 201711 48 chain 26027 chr15 102531392 + 79910133 79910599 L1PA15 4387 - 73 547 99909 44 6 3 47 18 13 22 24 48 6 1 0 27 1 0 135 1 4 12 7 1 20 1 0 25 1 0 11 9 8 48 chain 16622 chr15 102531392 + 79911275 79911574 L1PA14 3548 - 92 379 136606 38 2 1 21 1 0 4 2 1 12 5 3 33 18 12 98 13 12 52 chain 28698 chr15 102531392 + 79911594 79911898 AluYa5 310 - 6 310 90333 304 chain 35959 chr15 102531392 + 79930278 79930739 LTR46 455 + 0 454 74946 187 2 0 121 1 0 104 4 0 42 chain 7155 chr15 102531392 + 79934839 79934954 L1PA15 4387 + 4217 4327 176370 50 6 3 44 3 1 12 chain 105908 chr15 102531392 + 79939621 79940785 L1PA3long 6157 - 5 1170 35279 306 0 1 858 chain 108345 chr15 102531392 + 79940785 79941968 L1PA3long 6157 + 3806 4990 34604 834 0 1 349 chain 170175 chr15 102531392 + 79943545 79945439 L1PA4 6152 - 14 1916 22028 836 0 4 940 0 4 118 chain 27245 chr15 102531392 + 79961961 79962253 AluYa5 310 + 0 293 95445 108 0 1 184 chain 24993 chr15 102531392 + 79977471 79977893 Tigger3b 1229 - 618 1020 104840 20 4 3 10 1 0 31 8 6 19 8 10 97 2 0 85 33 18 17 1 0 86 chain 171869 chr15 102531392 + 79983311 79985694 HERVL-int 5654 - 3583 5654 21831 347 314 0 25 0 2 820 0 1 227 1 0 230 0 4 120 5 1 294 chain 29473 chr15 102531392 + 79985694 79986118 MLT2A1 477 - 0 477 86741 8 0 4 7 1 0 31 3 49 88 4 3 114 7 11 21 0 1 140 chain 340806 chr15 102531392 + 80003329 80007196 L1PA3long 6157 + 2037 6142 11878 118 0 1 1035 1 0 578 1 4 898 5 6 244 25 259 962 chain 2278 chr15 102531392 + 80006209 80006233 L1P1 4361 - 582 606 227881 24 chain 111088 chr15 102531392 + 80007268 80008826 L1PA5 6144 + 4897 6131 33911 400 324 0 834 chain 6318 chr15 102531392 + 80036996 80037069 tRNA-Cys-TGY 72 + 0 72 182659 15 1 0 57 chain 540565 chr15 102531392 + 80037432 80043454 L1PA3long 6157 - 0 6157 2726 6 3 0 837 0 4 350 0 1 240 2 0 968 0 1 614 0 1 805 1 0 765 0 2 654 0 128 152 2 5 471 1 2 151 chain 85448 chr15 102531392 + 80054109 80055159 MER11C 1089 - 26 1089 41363 325 0 1 38 1 0 7 0 4 302 1 0 69 0 4 61 0 1 21 0 5 225 chain 7254 chr15 102531392 + 80091119 80091530 L1MB7 1623 - 150 520 175739 21 3 0 8 6 0 8 233 213 13 26 15 8 2 0 48 4 5 31 chain 6124 chr15 102531392 + 80128569 80128712 MER5A1 166 + 1 135 184238 16 38 38 32 9 0 48 chain 23341 chr15 102531392 + 80150091 80150377 AluSg 306 + 11 300 113972 37 6 10 47 1 0 195 chain 45743 chr15 102531392 + 80167084 80167608 MER11B 1079 - 555 1079 62279 524 chain 3461 chr15 102531392 + 80189999 80190038 Tigger3c 601 - 508 547 215993 39 chain 49714 chr15 102531392 + 80208209 80208843 LTR10E 629 - 0 629 59223 6 1 0 55 2 0 268 5 4 130 0 2 55 1 0 53 1 0 38 1 0 18 chain 47050 chr15 102531392 + 80212542 80213156 LTR10E 629 - 6 629 61166 55 2 0 131 0 12 125 7 6 128 0 2 55 1 0 80 12 11 18 chain 102375 chr15 102531392 + 80218273 80219566 LTR12C 1709 + 0 1702 36170 80 3 4 215 0 2 144 10 47 158 0 278 184 1 0 4 4 2 106 11 4 212 0 102 79 5 4 77 chain 23938 chr15 102531392 + 80243500 80243784 AluSp 311 + 0 291 110701 20 3 10 261 chain 21769 chr15 102531392 + 80247901 80248203 MSTC 436 - 120 436 121136 32 19 21 239 0 12 12 chain 24390 chr15 102531392 + 80302309 80302597 AluSg7 307 - 19 307 108137 288 chain 116014 chr15 102531392 + 80308681 80310142 LTR12C 1709 + 0 1709 32450 190 9 10 138 19 62 61 5 6 209 0 200 348 0 4 393 5 4 84 chain 3065 chr15 102531392 + 80310142 80310174 LTR12C 1709 + 1677 1709 223665 32 chain 25385 chr15 102531392 + 80320490 80320790 AluY 311 + 1 300 102755 7 3 0 124 0 1 30 0 1 136 chain 3111 chr15 102531392 + 80321269 80321305 MER117 194 + 53 89 222736 36 chain 16351 chr15 102531392 + 80371232 80371412 L1PA3long 6157 - 0 180 137343 180 chain 10064 chr15 102531392 + 80376641 80376786 Tigger4a 237 + 75 219 160255 73 2 0 22 2 3 46 chain 5687 chr15 102531392 + 80378131 80378261 Tigger3a 397 + 1 191 188231 48 49 109 33 chain 10367 chr15 102531392 + 80437473 80437636 L1MA8 2339 + 537 682 158840 41 19 1 103 chain 75660 chr15 102531392 + 80447864 80448809 LTR13A 966 - 0 966 45684 200 1 0 70 0 1 311 1 0 100 0 2 88 10 11 89 21 40 54 chain 16755 chr15 102531392 + 80463607 80463791 L1PA4 6152 + 5762 5946 136245 184 chain 2827 chr15 102531392 + 80464909 80464949 MIR 256 - 111 150 228276 7 2 0 20 0 1 11 chain 20659 chr15 102531392 + 80520978 80521258 AluSg7 307 - 17 296 125112 11 1 0 124 18 18 10 0 1 10 1 0 105 chain 31288 chr15 102531392 + 80531651 80532065 MLT2A1 477 + 0 477 82009 133 0 15 21 1 5 209 0 41 25 9 8 10 0 4 6 chain 24702 chr15 102531392 + 80564962 80565331 THE1C 375 + 0 364 106423 114 9 16 64 26 3 8 0 11 134 1 0 4 0 1 9 chain 211053 chr15 102531392 + 80596513 80598861 L1PA4 6152 - 11 2356 18427 118 7 0 567 0 2 1094 0 4 161 2 0 399 chain 24569 chr15 102531392 + 80602354 80602638 L1PA7 6471 + 6162 6442 107152 235 4 0 45 chain 3994 chr15 102531392 + 80615410 80615456 MADE1 96 + 50 96 207469 46 chain 25020 chr15 102531392 + 80664822 80665121 AluSp 311 - 13 311 104682 186 2 1 111 chain 16782 chr15 102531392 + 80675299 80675621 L1MA3 4352 + 4031 4328 136163 58 42 18 6 1 0 37 0 1 9 8 15 58 4 0 19 0 1 5 2 0 24 1 0 6 1 0 28 1 0 12 chain 98104 chr15 102531392 + 80681931 80683893 L1PA8A 6298 + 5066 6291 37251 8 0 1 264 1 2 138 15 13 23 528 0 116 0 5 300 219 0 270 0 5 80 chain 4169 chr15 102531392 + 80712709 80712760 MER47B 469 - 178 229 204986 51 chain 8372 chr15 102531392 + 80717938 80718041 L1PA8A 6298 - 7 110 169015 103 chain 28574 chr15 102531392 + 80798268 80798576 AluYb8 318 - 10 318 90850 308 chain 69095 chr15 102531392 + 80832994 80833974 L1PA16 3655 - 62 1063 48764 15 2 0 277 13 19 16 8 6 55 0 4 23 3 0 140 0 2 10 0 1 4 2 1 98 1 0 24 2 1 169 0 3 49 5 4 21 1 0 9 0 17 33 chain 41889 chr15 102531392 + 80900529 80901073 MLT2A2 560 + 0 560 66773 180 1 0 222 1 12 36 0 1 54 0 1 44 0 4 6 chain 12514 chr15 102531392 + 80905338 80905541 MER30 238 + 0 236 150186 15 4 14 68 16 35 53 5 8 17 0 1 25 chain 7061 chr15 102531392 + 80908502 80908587 MLT1B 390 - 25 110 177025 85 chain 100255 chr15 102531392 + 80939543 80940720 SVA_B 1603 + 269 1603 36704 366 0 77 34 0 40 93 0 42 51 9 8 10 13 12 601 chain 21522 chr15 102531392 + 80948832 80949198 THE1B 368 + 0 368 122069 111 0 3 6 17 15 42 63 66 73 1 0 6 1 0 46 chain 45802 chr15 102531392 + 80967140 80967694 MER41A 554 + 0 554 62234 104 1 0 75 0 1 374 chain 22018 chr15 102531392 + 80967757 80968063 MER4A1 472 + 97 427 120152 135 0 22 141 13 15 17 chain 2875 chr15 102531392 + 80968441 80968475 MER21B 843 + 771 805 227445 34 chain 12185 chr15 102531392 + 80999811 81000000 MER30 238 - 6 203 151475 93 8 1 11 3 21 48 8 5 18 chain 46417 chr15 102531392 + 81018203 81018721 MER9a1 513 - 0 513 61667 370 5 0 143 chain 26182 chr15 102531392 + 81054854 81055209 THE1B 368 - 0 368 99274 128 0 4 14 0 7 41 3 2 127 0 5 27 2 0 13 chain 8790 chr15 102531392 + 81055275 81055403 L1MB3 1562 - 400 531 166701 36 10 12 70 0 1 12 chain 8762 chr15 102531392 + 81063750 81063864 Tigger3a 397 + 140 288 166860 20 1 35 93 chain 2927 chr15 102531392 + 81144794 81144838 MADE1 96 + 1 46 226561 23 1 2 20 chain 12781 chr15 102531392 + 81157911 81158105 MER30B 195 + 0 192 149134 94 6 1 13 1 7 41 8 5 31 chain 16353 chr15 102531392 + 81169223 81169585 THE1B 368 - 0 368 137328 41 20 19 58 14 22 11 42 40 22 46 47 108 chain 6095 chr15 102531392 + 81210726 81210820 MER20 218 + 42 136 184460 9 4 0 30 1 5 50 chain 11712 chr15 102531392 + 81247123 81247288 MER30 238 + 46 230 153418 60 3 0 7 2 25 19 1 0 73 chain 356145 chr15 102531392 + 81254116 81258301 L1PA6 6164 + 1933 6162 11450 398 1 2 255 0 3 207 0 2 310 0 2 128 13 17 8 0 3 714 0 2 262 0 1 4 1 0 151 0 4 136 0 9 329 0 11 593 0 3 675 chain 21385 chr15 102531392 + 81337934 81338311 THE1D 372 + 2 372 122571 54 10 1 17 3 0 6 19 23 63 32 34 20 5 4 148 chain 11444 chr15 102531392 + 81338604 81338745 MER70A 477 - 0 142 154522 113 0 1 28 chain 13460 chr15 102531392 + 81348509 81349119 L1MB7 1623 - 16 574 146485 10 1 0 35 50 36 8 3 0 19 1 0 5 7 3 13 0 15 11 1 0 10 311 269 116 1 0 8 chain 76544 chr15 102531392 + 81369720 81370574 L1PA5 6144 - 1071 1925 45190 854 chain 92771 chr15 102531392 + 81370575 81371637 L1PA5 6144 + 5075 6129 38724 219 1 0 706 8 1 128 chain 94748 chr15 102531392 + 81383218 81384263 L1PA3long 6157 + 5111 6149 38151 889 7 0 149 chain 62428 chr15 102531392 + 81401041 81401839 HSMAR2 1300 - 6 804 51710 9 0 1 6 1 0 6 0 1 755 3 2 18 chain 6682 chr15 102531392 + 81406879 81406995 MER65A 464 - 13 130 179822 31 25 26 60 chain 25425 chr15 102531392 + 81421311 81421634 Tigger1 2417 - 944 1263 102577 174 4 0 145 chain 39233 chr15 102531392 + 81427723 81428159 L1PA4 6152 - 16 451 70407 195 1 0 240 chain 15359 chr15 102531392 + 81428159 81428327 L1PA4 6152 + 5535 5703 140319 168 chain 7950 chr15 102531392 + 81443687 81443796 HERVL-int 5654 - 1381 1495 171330 61 7 12 41 chain 128467 chr15 102531392 + 81450776 81452297 LTR12C 1709 + 0 1709 28461 39 4 0 412 1 2 13 1 0 4 0 1 207 0 159 275 1 0 5 3 1 106 0 4 92 1 5 17 0 29 83 1 0 166 6 5 84 chain 24184 chr15 102531392 + 81469463 81469719 AluYb8 318 - 3 259 109306 256 chain 198476 chr15 102531392 + 81494786 81496971 L1PA4 6152 - 118 2309 19320 35 4 5 66 0 1 619 0 4 1461 chain 10348 chr15 102531392 + 81496971 81497095 L1PA4 6152 + 6034 6152 158912 112 6 0 6 chain 40746 chr15 102531392 + 81500010 81500723 L1PA16 3655 - 200 908 68246 69 0 1 21 1 0 4 14 19 38 14 12 11 9 0 67 11 10 20 21 0 7 0 21 119 38 41 15 15 15 62 1 0 156 chain 10418 chr15 102531392 + 81581775 81581936 L1MB3 1562 - 631 783 158603 6 1 0 27 9 1 118 chain 41893 chr15 102531392 + 81623389 81623899 HERV1_LTRa 508 - 0 508 66766 27 13 9 119 0 1 262 1 3 45 1 0 42 chain 22650 chr15 102531392 + 81656791 81657032 L1HS 6032 + 5787 6028 117318 241 chain 7326 chr15 102531392 + 81701637 81701916 LTR12 884 + 171 397 175255 10 1 0 24 49 0 24 114 113 36 2 0 19 chain 13409 chr15 102531392 + 81706606 81707250 LTR12D 1347 + 587 1068 146678 77 148 47 41 258 201 67 36 31 17 chain 3625 chr15 102531392 + 81706686 81706799 LTR12D 1347 + 477 584 213250 35 61 55 17 chain 35794 chr15 102531392 + 81749161 81749724 LTR12F 595 + 0 595 75141 103 10 5 22 25 0 13 11 42 21 0 9 161 2 3 20 1 0 80 0 5 10 0 11 12 0 4 10 6 8 56 chain 3284 chr15 102531392 + 81754984 81755022 L1M2 1805 - 292 330 219276 38 chain 6466 chr15 102531392 + 81757730 81758087 L1M2 1805 - 988 1341 181501 45 257 253 55 chain 32809 chr15 102531392 + 81760081 81760503 L1PA8A 6298 + 5870 6290 79520 19 2 1 116 1 0 284 chain 3442 chr15 102531392 + 81765737 81765780 MamRep1527 640 - 370 413 216352 43 chain 83396 chr15 102531392 + 81780093 81781045 L1PA5 6144 - 12 962 42161 144 1 0 694 1 0 112 chain 3144 chr15 102531392 + 81785770 81785805 MER58A 224 - 144 179 222085 35 chain 6720 chr15 102531392 + 81811010 81811094 MLT1B 390 - 4 88 179534 84 chain 18366 chr15 102531392 + 81832720 81833144 L1MA4 2864 + 2431 2809 131888 18 11 7 38 8 9 114 10 12 39 9 6 18 100 60 14 2 0 43 chain 454938 chr15 102531392 + 81873927 81879330 L1PA6 6164 + 0 6160 8584 88 0 735 249 2 1 54 7 8 392 0 2 802 1 2 48 0 4 1272 3 0 5 1 4 1054 1 8 434 1 2 27 0 1 120 0 4 429 4 6 409 chain 22862 chr15 102531392 + 81919837 81920103 L1PA6 6164 + 4413 4679 116275 266 chain 20092 chr15 102531392 + 81920103 81920334 L1PA6 6164 + 4680 4911 126851 231 chain 103283 chr15 102531392 + 81920335 81921562 L1PA6 6164 + 4925 6158 35928 389 1 4 80 0 1 458 3 4 113 0 1 183 chain 15028 chr15 102531392 + 81921640 81921974 L1PB1 5432 + 5114 5417 141241 24 1 0 6 1 0 12 6 2 10 2 0 49 21 19 45 1 0 15 3 0 6 1 0 9 8 0 15 3 1 5 1 0 14 2 0 17 8 7 21 1 0 13 1 0 13 chain 154020 chr15 102531392 + 81927420 81930050 L1PB1 5432 - 12 2126 24088 16 1 0 13 1 0 21 1 0 24 2 0 10 14 12 14 9 0 14 3 0 15 1 0 44 7 6 10 2 1 50 24 33 20 3 0 9 183 26 269 0 1 189 0 2 244 1 2 147 0 2 6 0 1 95 1 3 35 0 1 53 9 3 273 357 0 24 2 5 92 0 7 322 chain 29018 chr15 102531392 + 81946020 81946554 LTR12 884 - 148 884 88912 63 2 1 22 8 113 70 27 28 23 11 12 28 2 0 34 1 2 27 1 0 49 15 14 45 11 0 24 1 0 8 6 113 40 0 4 16 chain 104827 chr15 102531392 + 81947378 81948505 L1PA2 6032 - 1 1129 35543 13 0 1 1114 chain 553045 chr15 102531392 + 81960786 81966841 L1PA2 6032 - 1 6028 1063 32 36 0 124 0 1 1774 0 1 1437 0 4 96 1 0 1853 1 2 213 0 2 488 chain 232419 chr15 102531392 + 81970924 81974322 L1PA13 3608 + 113 3488 17178 23 10 7 21 2 1 13 53 40 64 11 9 125 1 0 12 1 0 17 2 0 7 2 0 6 7 5 18 1 0 19 3 1 15 2 0 17 1 0 40 0 1 57 2 0 410 1 0 65 2 1 5 0 1 8 0 1 57 40 2 11 0 15 85 0 3 68 4 3 24 8 8 37 4 8 126 5 43 335 1 0 14 0 4 62 1 2 377 1 3 41 10 9 102 0 1 19 0 1 31 7 0 87 1 2 107 0 1 323 2 1 9 0 1 16 15 14 77 0 4 19 3 1 61 1 0 20 3 0 35 9 5 42 18 14 13 1 0 23 chain 3804 chr15 102531392 + 81972024 81972064 L1PA13 3608 - 2383 2423 204782 40 chain 29608 chr15 102531392 + 81984032 81984341 AluYb9 318 + 0 309 86189 309 chain 550291 chr15 102531392 + 81989506 81995515 L1PA2 6032 + 2 6032 1405 14 0 1 1708 0 5 352 1 0 496 1 3 482 1 0 2063 0 9 44 1 0 5 0 1 227 0 2 556 0 4 58 chain 30322 chr15 102531392 + 81995525 81995945 L1PA3long 6157 + 5774 6155 83862 49 0 1 288 2 8 7 46 0 28 chain 6559 chr15 102531392 + 82002027 82002100 L1PB3 3668 + 3402 3475 180787 73 chain 149182 chr15 102531392 + 82005649 82007312 L1PA4 6152 + 4146 6146 24732 205 0 4 309 4 338 773 1 0 371 chain 39586 chr15 102531392 + 82008954 82009758 L1PA15 4387 - 39 782 69910 12 14 9 12 3 1 44 24 21 32 10 5 27 2 1 51 6 5 24 4 3 98 0 2 6 9 2 5 1 0 56 1 0 40 8 6 8 2 0 51 4 0 8 8 6 42 7 6 56 3 1 32 53 30 41 chain 24701 chr15 102531392 + 82013541 82013927 THE1D 372 + 2 372 106434 49 29 0 21 0 10 68 0 3 5 8 5 21 11 14 174 chain 557902 chr15 102531392 + 82022621 82028649 L1PA2 6032 + 0 6030 510 3086 0 1 760 0 1 2182 chain 28401 chr15 102531392 + 82030118 82030420 AluYf4 310 - 8 310 91576 302 chain 13055 chr15 102531392 + 82030694 82030897 L1PA8 5853 + 5654 5853 148013 16 20 18 52 2 1 19 1 0 93 chain 12680 chr15 102531392 + 82035079 82035364 L1MB2 1706 - 10 277 149530 17 58 56 12 1 0 13 1 0 8 1 0 7 27 14 140 chain 5267 chr15 102531392 + 82051827 82051889 MER51A 677 + 0 62 192349 62 chain 38680 chr15 102531392 + 82051889 82052352 LTR2 463 + 0 463 71173 80 2 1 145 1 2 235 chain 21053 chr15 102531392 + 82072029 82072294 LTR8 732 + 0 265 123718 265 chain 28494 chr15 102531392 + 82083836 82084222 L1PA8 5853 + 5474 5853 91206 90 1 0 41 9 7 49 0 1 16 2 1 13 2 0 48 2 1 21 1 0 91 chain 553825 chr15 102531392 + 82090271 82096298 L1PA2 6032 + 1 6026 967 256 1 0 1825 1 0 3944 chain 250978 chr15 102531392 + 82114142 82117042 L1PA5 6144 + 3232 6144 16181 47 1 0 223 0 1 175 4 0 666 0 6 130 0 5 99 1 0 42 1 0 1003 0 7 508 chain 4580 chr15 102531392 + 82132063 82132161 L1MC4 1079 + 663 757 199869 13 4 1 28 19 18 34 chain 12493 chr15 102531392 + 82149891 82150252 L1MB3 1562 + 1214 1551 150271 128 173 150 29 8 7 23 chain 15349 chr15 102531392 + 82162448 82162628 L1PA5 6144 - 13 189 140340 158 4 0 18 chain 556954 chr15 102531392 + 82163008 82169040 L1PA2 6032 + 0 6032 613 5179 1 0 94 0 1 758 chain 18602 chr15 102531392 + 82184527 82184810 Tigger2a 444 - 1 276 131222 17 37 30 77 1 0 151 chain 22168 chr15 102531392 + 82209803 82210161 THE1C 375 + 0 374 119507 135 0 5 33 65 76 125 chain 107515 chr15 102531392 + 82210182 82211958 THE1C-int 1605 + 33 1604 34841 63 0 57 17 13 10 260 5 13 20 311 0 213 0 1 5 23 62 370 0 1 5 4 3 206 4 5 25 0 1 165 10 11 11 1 2 45 chain 33878 chr15 102531392 + 82257203 82257656 LTR12F 595 + 0 595 77813 25 0 1 74 0 12 23 4 0 7 0 2 14 1 67 61 0 64 51 0 1 193 chain 24070 chr15 102531392 + 82271657 82271997 THE1B 368 + 2 349 109925 17 0 1 53 1 3 93 1 0 29 9 16 18 1 0 8 1 0 109 chain 4381 chr15 102531392 + 82282270 82282321 MER5A 189 - 114 165 202182 51 chain 559555 chr15 102531392 + 82287507 82293537 L1PA2 6032 + 0 6031 385 3086 0 1 2944 chain 6338 chr15 102531392 + 82331962 82332100 MER20 218 - 33 176 182481 15 2 5 4 1 0 57 33 36 26 chain 6815 chr15 102531392 + 82355819 82355899 L1PA2 6032 + 5950 6030 178836 80 chain 20088 chr15 102531392 + 82423906 82424148 AluSp 311 + 57 297 126864 75 2 0 165 chain 29259 chr15 102531392 + 82462447 82462754 AluYa5 310 - 3 310 87743 307 chain 4127 chr15 102531392 + 82534690 82534801 Tigger4a 237 + 30 141 205562 18 48 48 45 chain 7519 chr15 102531392 + 82549930 82550131 L1MC2 1988 - 0 188 174046 35 36 34 16 32 25 29 8 4 45 chain 16751 chr15 102531392 + 82558379 82558607 MER30 238 - 3 238 136251 100 7 0 10 4 18 107 chain 32597 chr15 102531392 + 82559409 82559858 MER4A1 472 - 0 472 79854 154 17 18 25 4 5 24 0 21 225 chain 32387 chr15 102531392 + 82580744 82581110 L1PA4 6152 + 5792 6150 80211 104 8 0 254 chain 3251 chr15 102531392 + 82588347 82588391 Charlie4a 502 + 344 387 219996 5 1 0 38 chain 6625 chr15 102531392 + 82644291 82644445 Tigger4a 237 - 35 194 180273 42 2 37 43 53 23 14 chain 18793 chr15 102531392 + 82650776 82650996 L1PA7 6471 + 6243 6461 130692 38 2 0 180 chain 5251 chr15 102531392 + 82653058 82653123 MER58A 224 + 40 105 192507 65 chain 7343 chr15 102531392 + 82655808 82655933 MER30 238 + 92 230 175135 12 2 0 6 4 0 7 9 28 85 chain 33179 chr15 102531392 + 82681438 82681894 LTR15 485 - 10 462 78939 15 4 5 16 6 0 30 1 0 125 1 5 55 0 1 164 12 9 27 chain 79670 chr15 102531392 + 82681900 82682852 L1PA5 6144 - 6 974 43747 118 0 15 16 1 0 13 1 0 4 0 1 160 0 4 513 1 0 22 2 1 101 chain 23179 chr15 102531392 + 82711598 82711883 AluY 311 + 27 311 114774 96 1 0 188 chain 29114 chr15 102531392 + 82749123 82749624 MLT2A1 477 + 7 469 88488 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 71 39 39 chain 9928 chr15 102531392 + 82770393 82770510 LTR15 485 + 349 475 160934 102 0 9 15 chain 7010 chr15 102531392 + 82789734 82789819 MER30 238 - 8 93 177395 85 chain 18793 chr15 102531392 + 82794662 82794882 L1PA7 6471 - 10 228 130696 180 2 0 38 chain 28550 chr15 102531392 + 82819070 82819429 L1PA5 6144 + 5783 6143 90960 163 1 0 43 4 11 135 5 0 8 chain 3251 chr15 102531392 + 82885677 82885721 Charlie4a 502 + 344 387 219995 5 1 0 38 chain 6625 chr15 102531392 + 82941782 82941936 Tigger4a 237 - 35 194 180272 42 2 37 43 53 23 14 chain 18793 chr15 102531392 + 82948269 82948489 L1PA7 6471 + 6243 6461 130691 42 2 0 176 chain 9928 chr15 102531392 + 82969367 82969484 LTR15 485 - 10 136 160935 15 0 9 102 chain 27054 chr15 102531392 + 82990401 82990792 MLT2A1 477 - 86 470 96102 6 4 0 60 2 1 151 0 4 15 4 0 11 0 1 4 1 0 74 10 8 49 chain 6625 chr15 102531392 + 83020783 83020937 Tigger4a 237 - 35 194 180271 42 2 37 43 53 23 14 chain 18915 chr15 102531392 + 83027269 83027489 L1PA7 6471 + 6243 6461 130325 39 2 0 179 chain 10423 chr15 102531392 + 83031915 83032430 MER30 238 + 0 230 158588 15 30 31 46 299 0 12 2 0 6 4 0 7 9 28 85 chain 33179 chr15 102531392 + 83057973 83058429 LTR15 485 - 10 462 78938 15 4 5 16 6 0 30 1 0 125 1 5 55 0 1 164 12 9 27 chain 79611 chr15 102531392 + 83058438 83059387 L1PA5 6144 - 9 974 43771 115 0 15 16 1 0 13 1 0 4 0 1 160 0 4 513 1 0 22 2 1 101 chain 23179 chr15 102531392 + 83088123 83088408 AluY 311 + 27 311 114773 96 1 0 188 chain 27054 chr15 102531392 + 83125655 83126046 MLT2A1 477 + 7 391 96100 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 chain 9928 chr15 102531392 + 83146977 83147094 LTR15 485 + 349 475 160933 102 0 9 15 chain 7010 chr15 102531392 + 83174311 83174396 MER30 238 - 8 93 177394 85 chain 18793 chr15 102531392 + 83179239 83179459 L1PA7 6471 - 10 228 130695 180 2 0 38 chain 28550 chr15 102531392 + 83203413 83203772 L1PA5 6144 + 5783 6143 90959 163 1 0 43 4 11 135 5 0 8 chain 3584 chr15 102531392 + 83253095 83253136 Charlie4a 502 - 460 501 213940 41 chain 40255 chr15 102531392 + 83266048 83266524 LTR15 485 - 7 485 68939 132 2 3 310 0 1 32 chain 27408 chr15 102531392 + 83286475 83286762 AluYa5 310 - 2 289 94940 287 chain 56543 chr15 102531392 + 83337960 83339752 L1MA3 4352 + 2212 3528 54830 65 0 3 33 1 0 53 0 4 35 0 2 16 1004 515 329 0 4 6 0 5 24 1 0 81 6 3 138 chain 9363 chr15 102531392 + 83351690 83351799 Tigger1 2417 - 458 567 163741 109 chain 33517 chr15 102531392 + 83359732 83360128 L1HS 6032 - 372 769 78376 307 0 1 89 chain 258398 chr15 102531392 + 83371528 83374998 HERVH-int 3825 + 0 3566 15785 89 2 1 191 9 11 41 2 1 71 21 20 31 13 132 16 126 146 28 1 0 145 0 1 259 8 0 38 53 26 184 9 0 655 4 9 254 0 4 345 0 1 76 0 2 12 11 0 439 0 2 72 1 0 264 chain 88153 chr15 102531392 + 83384953 83386005 MER11C 1089 + 0 1073 40319 22 0 1 197 0 5 17 10 11 60 0 4 248 4 3 24 0 1 83 1 0 238 2 13 146 chain 23579 chr15 102531392 + 83408555 83408842 AluSp 311 - 17 302 112691 166 2 0 119 chain 23235 chr15 102531392 + 83433000 83433601 MER51B 395 + 81 387 114524 168 1 2 64 296 0 72 chain 12020 chr15 102531392 + 83446989 83447199 L1MB1 2102 + 1797 2003 152119 75 3 0 5 12 14 5 1 0 29 17 15 63 chain 3435 chr15 102531392 + 83525685 83525757 MIRc 230 + 62 132 216476 26 11 0 6 5 14 24 chain 72046 chr15 102531392 + 83534412 83535297 THE1B-int 1605 + 701 1593 47461 273 0 1 45 0 1 107 2 1 295 0 4 57 1 3 105 chain 567136 chr15 102531392 + 83551645 83557671 L1HS 6032 - 0 6031 82 1799 0 4 4156 0 1 71 chain 23346 chr15 102531392 + 83565813 83566104 AluSg7 307 - 3 296 113951 24 6 7 141 0 1 120 chain 2953 chr15 102531392 + 83580398 83580431 MER58A 224 - 145 178 226033 33 chain 35462 chr15 102531392 + 83608567 83608980 L1PA5 6144 + 5732 6144 75605 274 1 0 138 chain 5837 chr15 102531392 + 83638201 83638274 LTR47A 437 + 302 375 186798 73 chain 34649 chr15 102531392 + 83643831 83644326 L1MA2 4263 + 3627 4112 76692 35 1 0 98 0 3 46 3 0 131 0 2 14 11 9 93 19 11 35 1 0 8 chain 13649 chr15 102531392 + 83647772 83648002 THE1C 375 + 154 375 145786 25 0 2 5 40 35 129 6 0 25 chain 24567 chr15 102531392 + 83665115 83665403 AluY 311 + 5 291 107158 126 2 0 160 chain 162486 chr15 102531392 + 83665973 83667902 SVA_F 1814 - 2 1805 23000 66 0 21 512 130 0 114 32 0 104 0 1 28 3 18 60 1 0 879 chain 9933 chr15 102531392 + 83666551 83666681 SVA_F 1814 - 650 777 95588 26 1 0 10 2 0 91 chain 2445 chr15 102531392 + 83666795 83666827 SVA_F 1814 - 906 956 95588 3 1 19 28 chain 3329 chr15 102531392 + 83668271 83668306 MER33 330 - 267 302 218420 35 chain 25581 chr15 102531392 + 83671873 83672178 AluSp 311 - 8 311 101820 171 2 0 132 chain 3531 chr15 102531392 + 83695681 83695721 MER82 654 + 55 95 214856 40 chain 55956 chr15 102531392 + 83699337 83701266 L1PB2 3958 + 3034 3838 55146 64 0 5 204 2 0 43 0 4 6 0 3 11 8 0 63 834 14 9 0 3 90 5 1 63 1 0 44 304 0 20 1 0 71 2 0 18 0 2 66 chain 33521 chr15 102531392 + 83699738 83700111 L1PA5 6144 - 457 830 77526 373 chain 36435 chr15 102531392 + 83700113 83700540 L1PA5 6144 + 5717 6144 74322 427 chain 3557 chr15 102531392 + 83764265 83764310 U7 62 + 0 48 214386 40 0 3 5 chain 4463 chr15 102531392 + 83810499 83810554 Charlie1a 1436 + 682 738 201201 45 0 1 10 chain 23711 chr15 102531392 + 83828943 83829226 AluSc5 308 - 15 298 111973 283 chain 109734 chr15 102531392 + 83838570 83840436 L1PA16 3655 + 1841 3534 34272 29 1 0 200 0 1 104 4 6 396 12 11 86 2 1 45 2 0 5 0 2 16 1 2 68 2 0 85 10 0 24 1 0 46 324 163 71 2 0 78 13 11 68 0 4 171 chain 13865 chr15 102531392 + 83839804 83839961 L1PA5 6144 - 1 158 145017 157 chain 10394 chr15 102531392 + 83842059 83842188 MER47A 366 + 166 295 158727 129 chain 332621 chr15 102531392 + 83890292 83894167 L1P1 4361 + 4 3910 12104 940 0 4 1264 0 26 76 2 1 833 7 9 753 chain 15234 chr15 102531392 + 83897510 83897835 L1PB1 5432 - 20 324 140678 8 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 16 19 10 5 1 0 15 1 0 15 0 1 28 1 0 16 2 1 25 0 5 23 16 11 10 1 0 12 1 0 5 0 2 13 1 0 6 chain 20407 chr15 102531392 + 83905430 83905674 AluY 311 + 61 306 125868 41 1 0 6 1 2 22 0 1 173 chain 11698 chr15 102531392 + 83905681 83905827 AluYk4 311 + 139 298 153484 47 0 15 92 2 0 5 chain 10058 chr15 102531392 + 83908080 83908224 MER30 238 + 67 230 160282 40 4 21 45 1 3 54 chain 136823 chr15 102531392 + 83914479 83916447 L1PREC2 3366 - 303 2284 26677 4 1 0 11 2 0 24 0 1 13 6 4 35 35 21 24 0 1 4 6 3 12 6 1 18 29 20 14 7 3 43 9 8 43 13 11 152 0 1 264 0 4 321 0 2 236 0 1 9 3 5 240 4 5 45 1 0 58 10 39 10 0 12 23 10 13 223 chain 13832 chr15 102531392 + 83967396 83967577 MER30 238 - 0 199 145122 111 9 27 61 chain 86795 chr15 102531392 + 83997488 83998431 L1PA3long 6157 - 0 944 40856 147 0 1 796 chain 29654 chr15 102531392 + 83999559 84000000 LTR7B 505 + 0 489 86049 105 0 10 56 10 24 7 1 0 33 30 17 59 0 41 89 14 13 26 2 0 9 chain 33609 chr15 102531392 + 84004142 84004521 L1PA5 6144 - 6 384 78226 117 1 0 261 chain 24116 chr15 102531392 + 84022219 84022518 AluSx4 309 + 0 296 109661 8 0 1 109 2 0 172 2 0 6 chain 8804 chr15 102531392 + 84051496 84051759 L1MB2 1706 - 12 271 166626 23 132 118 62 0 10 46 chain 550236 chr15 102531392 + 84052403 84058368 L1PA2 6032 + 3 6032 1413 3163 3 67 2799 chain 24637 chr15 102531392 + 84066282 84066570 AluY 311 + 5 297 106795 4 1 0 117 0 1 90 0 4 76 chain 566705 chr15 102531392 + 84119556 84125586 L1HS 6032 - 0 6031 109 2215 0 1 3815 chain 44969 chr15 102531392 + 84127583 84128131 MLT2A2 560 - 0 560 63088 146 1 12 53 0 1 348 chain 19665 chr15 102531392 + 84166047 84166326 LTR3A 482 + 165 442 128209 73 2 1 27 2 0 20 0 1 102 0 1 6 11 10 36 chain 20618 chr15 102531392 + 84179662 84179906 L1PA5 6144 + 5902 6142 125230 233 4 0 7 chain 124186 chr15 102531392 + 84186717 84188442 L1PA16 3655 - 118 1927 29633 121 0 1 61 16 29 25 2 1 9 3 1 82 4 3 219 4 3 6 0 1 33 21 20 24 1 0 165 1 0 57 2 1 154 0 72 436 0 4 204 10 12 65 chain 4632 chr15 102531392 + 84195607 84195942 L1MA4A 3247 - 1134 1441 199280 42 4 1 12 249 224 28 chain 188534 chr15 102531392 + 84210285 84213261 L1MA3 4352 - 668 3657 20189 42 20 28 17 3 9 202 2 0 29 1 3 84 9 5 301 2 0 96 1 0 17 0 1 182 28 29 326 9 8 38 60 47 276 4 0 6 0 4 76 98 77 128 1 0 45 80 64 16 8 7 170 0 2 47 1 0 9 0 11 7 11 0 5 2 0 6 0 3 4 1 0 18 0 1 5 0 1 4 6 7 7 0 1 44 0 1 57 1 0 30 2 1 140 12 15 50 0 47 20 0 5 31 2 0 77 chain 5824 chr15 102531392 + 84245583 84245669 MER30 238 - 0 140 186906 27 0 27 46 1 28 12 chain 205207 chr15 102531392 + 84267971 84270654 L1PB1 5432 - 10 2661 18841 18 1 0 11 10 9 12 1 0 4 2 0 22 2 0 15 1 0 4 2 0 18 3 4 9 11 0 16 1 0 44 5 4 11 2 1 52 19 13 9 1 0 8 1 0 21 3 0 12 1 2 20 0 4 100 1 0 39 0 1 105 0 1 26 4 5 94 2 3 75 4 0 107 5 8 594 3 0 184 0 7 166 8 0 314 0 1 415 3 1 62 chain 25051 chr15 102531392 + 84295866 84296175 AluY 311 + 0 309 104536 23 1 0 109 0 1 176 chain 111740 chr15 102531392 + 84299561 84301073 THE1C-int 1605 - 0 1567 33742 16 1 0 178 8 9 221 7 8 22 1 2 54 0 14 7 8 1 221 0 1 78 1 0 6 0 1 14 6 0 36 11 8 53 11 0 203 0 7 167 0 4 97 0 54 85 chain 88710 chr15 102531392 + 84329456 84330419 L1PA2 6032 - 925 1888 40105 963 chain 84201 chr15 102531392 + 84330419 84331334 L1PA2 6032 + 5113 6031 41760 774 0 3 141 chain 127263 chr15 102531392 + 84370576 84372148 THE1A-int 1579 + 0 1578 28750 160 11 12 659 0 5 742 chain 26839 chr15 102531392 + 84412011 84412294 AluYb8 318 + 28 311 96846 283 chain 24991 chr15 102531392 + 84419314 84419600 AluSc 308 - 21 307 104850 286 chain 9391 chr15 102531392 + 84424812 84424944 L1MB3 1562 - 446 581 163607 61 9 12 62 chain 120258 chr15 102531392 + 84425340 84426914 THE1B-int 1605 - 0 1605 30960 11 2 1 63 0 1 153 0 1 359 5 6 50 3 4 190 22 13 56 10 9 188 1 2 34 14 40 165 0 1 130 0 10 118 chain 131040 chr15 102531392 + 84446733 84448880 L1PA13 3608 + 113 1922 27850 23 5 2 25 1 0 14 3 0 24 27 17 56 19 17 43 9 0 5 0 1 86 6 5 13 3 1 6 0 2 28 1 0 17 10 9 9 2 0 19 1 0 43 0 4 49 9 7 320 1 0 44 0 1 50 1 0 45 9 10 8 0 3 35 0 1 359 316 0 334 0 1 10 0 5 39 1 0 19 chain 165980 chr15 102531392 + 84489997 84491992 SVA_D 2077 - 2 2077 22516 593 0 98 166 1 0 164 0 52 9 0 2 23 80 0 6 0 1 13 15 12 13 0 1 8 19 23 720 1 0 95 0 25 39 18 0 12 chain 4246 chr15 102531392 + 84490953 84491033 SVA_D 2077 - 1192 1272 132046 80 chain 310830 chr15 102531392 + 84495276 84498773 L1PA5 6144 - 12 3496 12968 718 0 1 141 1 0 351 10 4 294 0 1 20 10 0 111 0 1 558 1 2 1282 chain 531288 chr15 102531392 + 84529432 84535513 L1PA4 6152 + 0 6143 4042 465 33 61 187 0 15 315 1 3 280 0 3 105 1 0 1274 0 5 134 0 1 335 1 0 68 0 3 1054 0 1 355 0 1 638 1 5 112 0 1 722 chain 14903 chr15 102531392 + 84603554 84603750 L1PB4 2604 + 2344 2538 141620 39 2 0 155 chain 533477 chr15 102531392 + 84631477 84637906 L1PA7 6471 + 5 6461 3774 91 1 2 246 1 0 59 1 2 80 1 12 260 5 6 526 13 4 12 5 0 383 5 6 36 0 1 116 0 1 283 6 7 494 10 0 265 1 2 461 0 1 141 1 0 117 0 6 266 1 0 111 2 0 348 0 3 398 0 1 31 4 0 731 0 1 105 0 7 85 0 13 269 0 3 102 1 7 295 9 9 51 chain 105561 chr15 102531392 + 84711171 84712397 L1P1 4361 + 5 1236 35358 483 5 10 738 chain 26633 chr15 102531392 + 84712397 84712694 L1PA4 6152 + 3930 4227 94847 297 chain 170621 chr15 102531392 + 84712694 84714604 L1PA4 6152 + 4229 6143 21977 1321 0 5 199 1 0 389 chain 10109 chr15 102531392 + 84734149 84734277 L1PA17 2846 - 2698 2824 160047 117 1 0 4 1 0 5 chain 32636 chr15 102531392 + 84738766 84739215 MER4A1 472 + 0 472 79787 225 1 22 23 4 5 25 17 18 154 chain 463389 chr15 102531392 + 84741565 84747288 L1PA6 6164 + 0 6162 8277 63 1 2 23 0 735 640 0 4 487 1 0 259 0 2 110 5 0 204 2 0 50 2 0 217 0 2 923 0 1 66 1 0 4 0 1 811 0 1 217 305 0 409 0 1 37 0 3 22 1 5 9 0 3 704 9 10 131 4 0 6 chain 5308 chr15 102531392 + 84754327 84754412 L1MC2 1988 + 1806 1887 191927 39 12 8 34 chain 9356 chr15 102531392 + 84874400 84874516 LTR15 485 + 349 475 163773 83 0 1 18 0 9 15 chain 18793 chr15 102531392 + 84895190 84895410 L1PA7 6471 - 10 228 130694 180 2 0 38 chain 481300 chr15 102531392 + 84932861 84938290 L1PA4 6152 - 9 5440 7680 2978 1 0 454 4 9 382 1 0 1362 1 0 246 chain 92708 chr15 102531392 + 84942753 84943791 L1PA3long 6157 - 0 1048 38742 20 0 6 265 0 1 171 1 0 380 0 4 201 chain 27054 chr15 102531392 + 84964810 84965201 MLT2A1 477 - 86 470 96101 6 4 0 60 2 1 151 0 4 15 4 0 11 0 1 4 1 0 74 10 8 49 chain 80896 chr15 102531392 + 85099506 85100436 L1PA5 6144 + 5170 6135 43236 124 1 0 16 0 21 674 0 15 115 chain 34499 chr15 102531392 + 85100446 85100898 LTR15 485 + 23 475 76910 16 22 20 220 1 5 155 3 0 17 0 1 18 chain 22713 chr15 102531392 + 85127873 85128167 AluSp 311 + 12 309 117018 84 13 16 197 chain 12976 chr15 102531392 + 85180810 85180958 L1PA7 6471 - 7 155 148326 148 chain 10028 chr15 102531392 + 85204595 85204710 MER30 238 - 0 115 160435 115 chain 102200 chr15 102531392 + 85215486 85216662 SVA_D 2077 + 23 1740 36214 364 0 3 163 0 40 184 40 0 140 0 538 285 chain 2856 chr15 102531392 + 85238982 85239012 U2 167 - 137 167 227727 30 chain 3207 chr15 102531392 + 85260853 85260889 L1MB8 1703 + 1152 1188 220768 36 chain 6201 chr15 102531392 + 85270885 85270960 MLT2A2 560 - 0 75 183580 75 chain 24460 chr15 102531392 + 85301200 85301503 AluSg4 309 - 8 309 107755 175 5 3 123 chain 12597 chr15 102531392 + 85322149 85322346 LTR9B 643 - 0 245 149850 40 30 28 119 0 50 8 chain 16069 chr15 102531392 + 85337288 85337471 L1PA7 6471 + 6276 6459 138148 183 chain 25786 chr15 102531392 + 85359519 85359819 AluY 311 + 0 295 100927 123 1 0 3 4 0 169 chain 18705 chr15 102531392 + 85395223 85395469 MER44B 551 - 8 257 130931 159 0 4 62 1 0 24 chain 3862 chr15 102531392 + 85395847 85395894 MER44D 709 - 594 641 209431 47 chain 24176 chr15 102531392 + 85417156 85417434 L1PA7 6471 - 12 290 109338 278 chain 12098 chr15 102531392 + 85418973 85419114 L1PA4 6152 - 11 156 151802 109 0 4 32 chain 2775 chr15 102531392 + 85452230 85452260 Arthur1B 1073 + 69 99 229098 30 chain 8687 chr15 102531392 + 85457475 85457613 MLT1A0 366 - 216 357 167270 58 0 1 30 13 14 17 1 2 19 chain 12151 chr15 102531392 + 85477221 85477410 MSTC 436 - 237 436 151603 32 1 9 12 8 9 108 5 6 23 chain 25363 chr15 102531392 + 85508248 85508589 THE1C 375 + 0 336 102867 25 2 0 32 0 1 84 1 0 4 13 9 26 0 1 154 chain 21284 chr15 102531392 + 85509768 85510108 THE1B 368 - 0 368 122919 88 0 1 36 35 45 24 4 5 61 0 1 41 7 22 44 chain 16242 chr15 102531392 + 85549316 85549516 L1PA3long 6157 + 5962 6157 137648 40 0 7 134 12 0 14 chain 102219 chr15 102531392 + 85554822 85555939 L1PA3long 6157 + 5041 6157 36212 266 1 0 850 chain 28002 chr15 102531392 + 85560210 85560507 AluYb8 318 + 0 302 92994 283 0 5 14 chain 504438 chr15 102531392 + 85595060 85600897 L1PA5 6144 - 6 6144 6575 132 1 0 974 1 0 54 6 10 620 0 4 669 1 0 185 0 4 234 0 5 215 1 0 311 0 2 524 0 2 1022 14 5 325 16 23 25 5 6 296 0 271 77 2 16 127 chain 20574 chr15 102531392 + 85608505 85608726 L1PA2 6032 + 5811 6032 125379 221 chain 15273 chr15 102531392 + 85631556 85631886 L1MB8 1703 - 118 556 140561 47 13 28 13 3 17 15 45 43 138 32 113 24 chain 5464 chr15 102531392 + 85655521 85655616 L1MA8 2339 - 73 166 190367 9 1 0 38 6 11 10 6 0 25 chain 29297 chr15 102531392 + 85666620 85666998 MLT2A1 477 - 92 477 87590 149 0 2 60 20 24 7 0 1 142 chain 46032 chr15 102531392 + 85701052 85701603 MER41A 554 - 0 554 62012 43 0 2 256 0 1 252 chain 7564 chr15 102531392 + 85701977 85702073 MLT1B 390 + 294 389 173771 35 1 0 60 chain 13346 chr15 102531392 + 85706047 85706685 MLT1B 390 + 0 363 146905 22 28 25 8 1 0 34 412 141 133 chain 2938 chr15 102531392 + 85716458 85716489 MLT1A 405 + 311 342 226369 31 chain 29106 chr15 102531392 + 85732204 85732680 MLT2A1 477 + 7 469 88524 49 10 8 74 1 0 4 0 1 10 4 0 16 0 4 151 2 1 60 4 0 6 46 39 39 chain 9487 chr15 102531392 + 85753478 85753594 LTR15 485 + 349 475 163129 83 0 1 18 0 9 15 chain 18793 chr15 102531392 + 85774306 85774526 L1PA7 6471 - 10 228 130693 180 2 0 38 chain 22915 chr15 102531392 + 85821882 85822175 AluY 311 + 8 302 116032 22 2 0 102 0 1 50 5 7 112 chain 32223 chr15 102531392 + 85824954 85825456 MLT2A1 477 + 7 477 80480 51 8 1 60 0 1 48 1 5 155 0 2 65 10 0 7 6 0 8 6 0 6 2 0 9 12 0 8 3 7 37 chain 23073 chr15 102531392 + 85826256 85826549 AluSp 311 - 20 297 115282 10 17 0 149 0 1 117 chain 18357 chr15 102531392 + 85839496 85839775 L1PA8 5853 - 60 334 131916 32 2 1 15 10 9 48 2 1 9 1 0 5 0 2 61 4 2 44 1 0 45 chain 90763 chr15 102531392 + 85852200 85853490 L1PB3 3668 + 841 2100 39371 134 3 1 33 21 22 171 8 6 19 4 2 171 1 0 38 0 1 221 3 0 28 30 6 4 0 1 39 15 16 5 1 0 341 chain 6020 chr15 102531392 + 85862201 85862269 L1MA4 2864 + 1635 1703 185049 68 chain 25296 chr15 102531392 + 85862276 85862565 AluSp 311 + 8 297 103245 289 chain 30130 chr15 102531392 + 85942445 85942763 AluYb8 318 + 0 318 84384 318 chain 28824 chr15 102531392 + 85963166 85963471 AluYa5 310 - 5 310 89789 305 chain 555901 chr15 102531392 + 85977194 85983196 L1PA2 6032 + 2 6014 734 129 0 4 1143 0 5 1677 2 0 729 0 1 120 0 3 1366 2 1 834 chain 230288 chr15 102531392 + 85991518 85994951 L1PA14 3548 - 63 3458 17292 20 1 0 7 6 4 40 1 0 18 24 19 36 24 19 101 1 0 85 1 0 5 2 0 17 4 0 40 11 12 40 0 1 14 18 14 51 64 22 121 0 1 110 33 7 94 2 1 50 1 0 189 4 10 169 1 4 4 0 1 50 0 1 5 4 5 129 0 1 4 6 3 51 0 1 102 1 0 10 0 1 12 0 1 71 6 5 181 0 54 98 0 4 49 6 10 157 5 6 109 0 1 103 2 1 70 1 4 53 1 0 194 0 5 6 25 1 118 0 3 27 1 0 119 2 0 5 0 2 28 4 2 29 16 13 17 13 12 10 1 0 63 2 3 8 0 2 50 chain 115320 chr15 102531392 + 86008584 86009842 L1PA3long 6157 - 0 1257 32674 259 1 0 998 chain 27731 chr15 102531392 + 86026585 86026892 AluYb9 318 + 10 313 93935 297 4 0 6 chain 28598 chr15 102531392 + 86115900 86116249 L1PA7 6471 - 2 348 90742 15 3 0 331 chain 21054 chr15 102531392 + 86118681 86118935 AluY 311 + 39 295 123712 93 10 12 151 chain 3166 chr15 102531392 + 86132592 86132632 MER58B 340 - 152 193 221640 13 0 1 27 chain 25211 chr15 102531392 + 86190894 86191186 AluY 311 + 0 310 103680 125 0 18 167 chain 81247 chr15 102531392 + 86208773 86209719 L1PA6 6164 - 11 965 43064 253 1 0 133 0 4 439 1 4 4 0 1 87 0 1 28 chain 27153 chr15 102531392 + 86281815 86282099 AluYb8 318 + 28 312 95746 284 chain 3387 chr15 102531392 + 86342716 86342774 MER90a 614 + 71 130 217350 13 7 8 38 chain 35284 chr15 102531392 + 86344043 86344505 LTR2 463 + 0 463 75814 368 0 1 4 24 25 9 1 0 56 chain 6533 chr15 102531392 + 86353963 86354111 MER44B 551 + 376 523 180983 58 49 50 6 0 1 16 3 0 16 chain 4440 chr15 102531392 + 86354494 86354545 MER2 342 - 119 170 201448 51 chain 22462 chr15 102531392 + 86355770 86356050 AluSp 311 - 32 311 118188 158 0 1 112 2 0 8 chain 29687 chr15 102531392 + 86385845 86386160 AluYb8 318 - 3 318 85877 315 chain 10061 chr15 102531392 + 86399855 86399999 MSTA 426 + 274 426 160268 26 10 18 108 chain 36062 chr15 102531392 + 86406542 86407018 L1PA8 5853 + 5383 5853 74816 181 1 0 45 2 0 67 4 3 9 14 13 38 3 2 112 chain 56023 chr15 102531392 + 86411356 86412422 L1MA5A 2387 - 805 1557 55108 8 1 0 12 0 6 7 2 1 140 1 0 408 315 0 100 9 7 63 chain 93518 chr15 102531392 + 86424850 86425881 L1PA3long 6157 - 5 1040 38503 844 0 3 31 0 1 156 chain 53624 chr15 102531392 + 86425881 86426467 L1PA3long 6157 + 4524 5110 56373 586 chain 29745 chr15 102531392 + 86445109 86445431 AluYb9 318 + 0 318 85678 126 4 0 192 chain 21240 chr15 102531392 + 86454479 86454717 L1PA5 6144 - 0 238 123055 238 chain 2993 chr15 102531392 + 86459284 86459316 L1MC2 1988 + 1945 1977 225145 32 chain 5392 chr15 102531392 + 86460795 86460874 MLT1C 463 - 29 109 191068 26 6 7 47 chain 26587 chr15 102531392 + 86461070 86461424 THE1B 368 + 0 368 97702 40 0 15 117 10 9 159 0 3 7 3 0 18 chain 30327 chr15 102531392 + 86464629 86465205 L1PB1 5432 + 4838 5411 83850 148 0 1 7 4 3 82 19 30 5 1 0 24 1 0 9 16 11 11 7 5 46 2 1 12 11 10 38 1 0 7 22 20 14 12 10 14 2 0 24 1 0 4 0 3 15 0 3 9 1 0 7 chain 18970 chr15 102531392 + 86500656 86500930 AluSc 308 + 9 283 130183 37 14 22 50 2 0 5 7 1 159 chain 240981 chr15 102531392 + 86513046 86515895 L1PA7 6471 - 1 2868 16725 4 1 0 180 1 2 304 1 4 355 2 0 424 6 10 370 0 4 141 0 4 851 0 4 98 0 1 111 chain 37122 chr15 102531392 + 86537727 86538201 L1PA8 5853 - 0 469 73352 93 1 0 19 2 1 6 0 1 45 1 0 9 1 0 71 2 0 46 1 0 168 0 1 9 chain 3713 chr15 102531392 + 86538476 86538518 L1MC2 1988 + 1720 1762 211738 42 chain 6661 chr15 102531392 + 86539505 86539596 MER44A 345 - 9 97 179989 83 3 0 5 chain 27539 chr15 102531392 + 86551896 86552273 L1PA8 5853 + 5471 5847 94536 51 0 6 36 1 0 45 2 0 69 2 1 8 5 4 53 2 1 15 1 0 87 chain 24025 chr15 102531392 + 86564059 86564326 L1PA3long 6157 + 5890 6157 110189 267 chain 19210 chr15 102531392 + 86578907 86579116 L1PA3long 6157 - 4 213 129505 209 chain 4838 chr15 102531392 + 86585292 86585370 MADE1 96 - 1 96 196904 35 10 27 33 chain 113790 chr15 102531392 + 86613243 86614521 L1PA4 6152 - 9 1288 33152 136 5 6 1137 chain 5859 chr15 102531392 + 86637676 86637784 LTR16A 446 - 13 123 186598 55 1 0 5 5 0 3 5 0 8 1 14 25 chain 4318 chr15 102531392 + 86681524 86681573 5S 121 - 30 79 202985 49 chain 505245 chr15 102531392 + 86690374 86696882 L1PA6 6164 + 0 6147 6511 237 0 2 11 17 16 22 0 2 170 0 3 55 0 2 47 1 0 392 3 5 182 7 9 85 1 4 1089 0 1 186 0 1 668 0 1 84 0 4 228 0 3 10 0 1 181 0 4 82 412 0 159 0 3 408 0 8 273 0 1 13 2 1 151 0 4 463 6 8 33 0 4 84 1 0 553 8 10 184 chain 32984 chr15 102531392 + 86694145 86694531 L1PA3long 6157 + 5757 6147 79243 66 0 1 182 1 4 137 chain 17474 chr15 102531392 + 86727721 86727922 L1P2 5180 - 3547 3749 133844 182 0 1 19 chain 105353 chr15 102531392 + 86727922 86729135 L1PA5 6144 + 4538 6132 35412 208 0 369 31 0 5 86 0 2 16 5 6 36 0 4 831 chain 514581 chr15 102531392 + 86749067 86755204 L1PA6 6164 - 5 6164 5717 146 20 22 79 0 14 72 1 0 486 0 1 32 1 0 7 0 4 534 0 1 108 2 0 595 1 0 90 6 0 443 3 4 331 0 1 89 0 4 661 0 3 934 0 1 540 0 1 491 7 6 394 0 1 64 chain 25894 chr15 102531392 + 86772423 86772768 THE1C 375 - 0 375 100468 81 5 7 213 3 31 43 chain 4254 chr15 102531392 + 86814669 86814719 MLT1D 503 - 364 414 203831 50 chain 35499 chr15 102531392 + 86833923 86834316 L1PA3long 6157 - 0 393 75556 393 chain 5215 chr15 102531392 + 86924529 86924668 ORSL-2b 485 - 280 425 192880 41 43 52 21 8 6 9 1 0 16 chain 5788 chr15 102531392 + 86929521 86929590 MER41B 635 - 85 155 187294 41 0 1 28 chain 93577 chr15 102531392 + 86944073 86945412 L1PB2 3958 - 120 1460 38485 31 0 1 31 1 0 49 0 3 41 2 1 62 4 3 28 21 24 11 9 8 94 5 0 13 2 0 11 0 3 61 1 0 56 7 4 82 16 20 245 0 1 31 2 0 6 0 1 102 0 1 74 1 0 180 2 1 17 0 3 41 chain 506391 chr15 102531392 + 86962393 86968777 L1PA7 6471 + 0 6467 6442 97 10 4 63 0 5 41 1 3 190 4 0 15 11 12 176 1 0 8 0 1 273 1 0 430 0 1 30 4 6 42 6 9 156 0 1 26 0 3 364 21 18 107 1 2 58 0 1 26 6 12 44 0 1 201 0 3 202 1 3 255 0 4 499 1 2 43 15 20 46 1 0 19 3 1 247 0 8 230 0 1 129 0 11 160 0 38 13 1 2 198 14 15 93 0 4 281 3 4 134 6 0 453 1 0 4 2 3 62 2 0 548 0 1 305 chain 335118 chr15 102531392 + 87005692 87011168 L1PA7 6471 - 25 6468 12024 130 8 9 206 11 3 134 0 4 257 15 16 48 1 2 23 4 1 664 12 11 151 30 32 176 0 1 7 8 7 560 11 2051 136 1092 0 41 0 4 313 0 1 428 16 40 132 22 22 292 0 1 332 1 2 47 1 0 17 9 0 77 19 20 45 chain 530971 chr15 102531392 + 87017327 87023467 L1PA5 6144 + 0 6144 4084 124 77 77 664 0 1 1029 6 0 1269 1 0 42 0 1 697 0 1 1048 0 1 340 0 3 234 5 0 360 1 0 185 0 10 58 chain 557650 chr15 102531392 + 87071325 87077356 L1PA2 6032 + 0 6032 538 3921 0 1 2110 chain 531771 chr15 102531392 + 87103375 87109498 L1PA5 6144 - 1 6141 3993 10 1 2 140 0 2 5 4 3 680 0 4 252 21 0 171 0 4 774 0 12 1263 0 1 102 10 22 389 0 1 2004 0 1 142 0 1 155 chain 4815 chr15 102531392 + 87116049 87116105 MER41E 591 - 535 591 197176 56 chain 116465 chr15 102531392 + 87120241 87121797 THE1B-int 1605 + 27 1605 32290 135 10 11 257 0 25 177 69 65 24 7 8 146 5 4 726 chain 53706 chr15 102531392 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87261705 L1PA5 6144 + 5814 6072 125156 165 0 2 91 chain 4064 chr15 102531392 + 87261712 87261759 L1PA5 6144 + 6081 6128 206418 47 chain 260622 chr15 102531392 + 87263973 87266897 L1PA4 6152 + 3227 6152 15660 36 0 4 739 6 0 1291 0 4 448 1 0 403 chain 21733 chr15 102531392 + 87273315 87273681 L1PA16 3655 + 2546 2938 121267 16 9 14 46 21 22 8 0 15 7 1 0 129 0 7 75 1 2 6 1 0 10 10 9 26 chain 227276 chr15 102531392 + 87290711 87293335 L1PA5 6144 - 0 2595 17468 892 2 0 140 30 1 158 1 2 978 0 1 423 chain 18403 chr15 102531392 + 87316642 87316846 L1PA4 6152 - 58 262 131776 204 chain 91919 chr15 102531392 + 87321196 87322275 MER11C 1089 - 12 1089 38992 295 8 7 207 2 1 567 chain 16867 chr15 102531392 + 87329339 87329529 L1PA3long 6157 - 0 190 135922 190 chain 8751 chr15 102531392 + 87342411 87342504 L1PA3long 6157 - 0 93 166920 93 chain 154314 chr15 102531392 + 87362609 87364559 L1PA7 6471 + 4551 6461 24065 118 24 18 233 0 1 691 2 0 5 37 1 100 9 8 129 0 1 274 0 1 71 2 4 38 0 2 62 8 0 9 0 7 5 1 0 132 chain 27467 chr15 102531392 + 87376511 87376866 THE1A 353 + 0 353 94752 109 5 4 85 1 0 155 chain 90617 chr15 102531392 + 87433142 87434518 L1PA11 4918 - 291 1639 39422 16 48 33 11 2 0 12 4 3 13 50 37 12 4 3 9 22 20 51 4 1 12 2 1 56 0 4 116 1 0 4 3 0 192 17 22 347 8 0 155 0 13 205 chain 41455 chr15 102531392 + 87443028 87443562 MLT2A2 560 + 15 560 67341 381 1 0 10 8 19 64 1 2 69 chain 19995 chr15 102531392 + 87479760 87480075 L1PA14 3548 + 3137 3440 127160 84 1 0 82 2 1 27 1 0 12 6 2 32 6 4 12 1 0 5 1 0 16 1 0 26 chain 44068 chr15 102531392 + 87482324 87482868 MLT2A2 560 + 0 560 64138 42 0 1 363 0 11 131 0 4 8 chain 20405 chr15 102531392 + 87487324 87487607 AluSp 311 + 4 281 125877 15 1 2 152 10 1 88 5 7 12 chain 78354 chr15 102531392 + 87507871 87508840 L1PA7 6471 - 1 977 44347 12 1 2 97 0 5 44 1 2 598 2 0 48 2 1 37 0 3 127 chain 32838 chr15 102531392 + 87508840 87509230 L1PA7 6471 + 6066 6456 79479 115 2 1 102 0 1 171 chain 123477 chr15 102531392 + 87509869 87511267 L1PA4 6152 - 312 1711 29890 851 0 1 547 chain 33546 chr15 102531392 + 87530038 87530489 LTR7 482 - 5 482 78323 44 0 3 122 3 1 12 0 31 149 24 18 97 chain 26307 chr15 102531392 + 87542100 87542426 L1PA5 6144 - 5 339 98803 148 4 11 101 0 1 73 chain 190687 chr15 102531392 + 87542457 87544538 L1PA2 6032 - 7 2082 19971 13 1 0 254 5 0 1808 chain 461076 chr15 102531392 + 87544538 87550047 L1PA4 6152 - 324 6142 8360 15 0 1 119 0 2 389 0 4 40 2 0 369 0 1 715 0 1 460 1 2 447 0 12 26 0 1 47 1 0 337 0 278 17 0 2 8 16 14 474 4 0 110 0 3 801 5 1 273 3 0 6 1 4 218 0 2 488 6 20 111 chain 8501 chr15 102531392 + 87558315 87558570 MLT2B3 573 + 243 509 168291 47 92 42 16 17 67 25 10 21 48 chain 288745 chr15 102531392 + 87560872 87564948 L1PA11 4918 + 23 4388 14101 19 2 0 42 4 1 27 4 3 10 11 9 46 1 0 32 2 0 4 1 0 45 1 2 131 0 21 31 0 5 17 0 1 95 0 3 38 4 7 137 15 17 115 0 3 167 12 5 43 4 0 137 9 6 89 0 4 73 3 1 54 0 3 237 0 1 50 5 6 35 33 27 309 15 15 45 15 18 82 0 5 17 0 1 15 0 3 139 2 1 148 8 269 348 6 10 313 0 3 93 4 0 122 5 4 80 0 7 36 3 4 51 0 1 79 4 0 85 8 9 196 5 0 58 chain 382617 chr15 102531392 + 87565155 87570350 L1PB1 5432 + 78 5416 10675 53 8 10 152 20 0 212 7 220 288 0 1 59 10 6 218 5 0 5 1 2 31 1 0 58 1 0 9 8 0 101 0 1 370 3 1 425 7 9 185 4 1 82 0 5 108 14 15 149 15 3 139 8 13 137 0 4 61 0 1 524 18 1 212 7 8 38 19 10 347 0 2 181 0 2 87 1 2 48 0 4 24 0 2 108 1 0 151 4 5 8 0 9 118 1 2 10 3 0 23 1 0 9 1 0 10 6 2 7 0 5 7 15 8 34 18 16 45 1 0 15 12 1 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 12 chain 160406 chr15 102531392 + 87585199 87587130 HERVH-int 3825 + 1887 3825 23286 199 10 15 156 0 1 1150 37 38 379 chain 23114 chr15 102531392 + 87588337 87588735 LTR7 482 + 0 442 115067 100 4 49 11 51 0 51 9 19 33 1 32 19 0 10 47 1 0 71 chain 8513 chr15 102531392 + 87633406 87633516 L1PA8 5853 - 0 109 168227 93 1 0 16 chain 23503 chr15 102531392 + 87643387 87643698 L1PA8 5853 + 5542 5853 113118 22 2 0 44 2 0 74 1 0 7 1 0 59 0 7 5 2 1 92 chain 23419 chr15 102531392 + 87686450 87686740 AluSc 308 + 17 308 113544 246 0 1 44 chain 19020 chr15 102531392 + 87692025 87692299 L1PA8 5853 - 0 261 130063 89 5 4 16 7 0 55 8 7 74 4 0 16 chain 65932 chr15 102531392 + 87696551 87697648 L1PB1 5432 - 15 1021 50130 4 1 0 9 1 0 13 1 0 21 1 0 24 24 19 19 14 5 7 3 0 15 1 0 41 8 7 12 2 1 53 2 0 9 16 11 9 1 0 24 1 0 6 6 5 147 0 1 33 4 15 85 7 10 8 2 0 146 69 2 30 3 0 215 chain 23766 chr15 102531392 + 87697663 87697948 L1PB1 5432 + 4136 4421 111674 285 chain 525599 chr15 102531392 + 87773029 87779126 L1PA4 6152 - 0 6150 4620 6 0 5 135 1 0 632 0 2 457 0 20 466 0 4 216 1 2 797 4 0 1020 0 4 705 0 1 75 0 18 343 0 1 683 0 1 68 0 1 488 chain 12036 chr15 102531392 + 87781301 87781545 L1MA6 2487 - 327 565 152047 82 75 71 4 1 0 75 1 0 6 chain 523528 chr15 102531392 + 87792996 87799105 L1PA4 6152 - 0 6142 4808 113 0 1 146 0 1 368 6 3 605 0 20 266 7 1 250 0 5 386 0 2 46 0 1 761 1 0 345 0 1 123 5 0 10 7 12 579 0 3 867 0 1 612 0 1 10 0 2 445 13 17 14 12 13 112 chain 481402 chr15 102531392 + 87800015 87805937 L1PA6 6164 - 15 6160 7672 525 1 7 301 0 4 628 9 5 36 3 1 196 0 1 79 0 4 663 1 0 399 7 1 84 18 20 145 0 4 85 0 4 244 0 3 385 19 0 146 0 1 193 3 0 540 1 0 41 0 74 37 0 5 159 0 1 68 0 1 44 0 4 187 0 17 50 16 18 167 3 5 46 0 123 160 0 2 67 10 9 156 chain 3527 chr15 102531392 + 87806910 87806955 MADE1 96 + 51 96 214919 45 chain 527984 chr15 102531392 + 87818572 87824700 L1PA4 6152 - 18 6151 4404 153 1 2 671 0 4 207 0 1 49 0 1 682 1 2 677 1 0 519 0 1 845 2 0 246 0 3 512 0 2 321 1 0 377 3 0 6 1 4 528 19 14 306 chain 4803 chr15 102531392 + 87835893 87836001 MER53 195 + 9 167 197326 54 33 83 21 chain 31128 chr15 102531392 + 87836575 87837024 MER57A1 433 - 0 433 82291 150 6 7 35 20 5 11 11 6 178 0 3 38 chain 12309 chr15 102531392 + 87854487 87854620 L1PA4 6152 - 9 142 150978 133 chain 535275 chr15 102531392 + 87870623 87876642 L1PA3long 6157 - 0 6153 3554 272 5 0 123 4 0 1396 0 4 2238 1 5 1215 0 128 34 2 0 25 0 7 278 0 1 277 0 1 149 chain 2335 chr15 102531392 + 87904490 87904578 MIR 256 - 142 234 234928 17 4 6 13 37 39 17 chain 531486 chr15 102531392 + 87920459 87926626 L1PA4 6152 + 0 6150 4024 1005 0 1 576 0 3 866 1 3 373 0 1 997 11 12 345 0 2 707 19 2 12 0 2 161 0 6 527 1 0 292 18 0 115 0 1 141 chain 36190 chr15 102531392 + 87939888 87940294 L1PA4 6152 + 5745 6151 74640 406 chain 6329 chr15 102531392 + 87942861 87942969 MER58A 224 + 50 159 182559 61 20 21 27 chain 11360 chr15 102531392 + 87950378 87950543 LTR39 781 + 47 217 154859 138 13 18 14 chain 6882 chr15 102531392 + 87976086 87976160 L1PA4 6152 + 6062 6136 178332 74 chain 15484 chr15 102531392 + 87983703 87983891 L1PA5 6144 + 5956 6144 139941 188 chain 139082 chr15 102531392 + 87996471 87998222 L1PA8A 6298 - 10 1758 26282 110 1 0 292 0 1 315 0 2 75 1 4 71 0 1 8 1 0 61 0 5 268 1 0 250 12 0 285 chain 542314 chr15 102531392 + 88006971 88012977 L1PA3long 6157 + 0 6157 2458 152 0 12 522 0 3 92 0 128 67 1 2 1604 0 1 663 0 1 12 0 4 2739 0 1 154 chain 11213 chr15 102531392 + 88016210 88016337 L1PA5 6144 - 12 139 155377 127 chain 71303 chr15 102531392 + 88028418 88029218 L1PA3long 6157 - 0 798 47794 15 3 0 96 1 2 685 chain 23641 chr15 102531392 + 88034517 88034856 THE1C 375 + 2 342 112352 5 1 0 24 1 0 145 0 1 5 2 1 20 10 13 126 chain 566879 chr15 102531392 + 88053122 88059151 L1HS 6032 + 3 6032 97 6029 chain 115205 chr15 102531392 + 88075365 88076923 THE1B-int 1605 - 10 1605 32716 311 15 11 120 7 11 272 1 0 271 0 1 28 19 11 24 0 20 48 0 2 13 1 26 72 1 2 50 0 1 243 5 1 19 5 8 5 3 0 25 chain 62829 chr15 102531392 + 88089570 88090320 LTR17 781 - 9 781 51526 22 0 22 344 0 1 56 1 0 327 chain 89998 chr15 102531392 + 88103755 88104761 L1PA4 6152 + 4920 5948 39650 963 0 22 43 chain 16084 chr15 102531392 + 88104762 88104954 L1PA4 6152 + 5948 6141 138100 77 0 1 115 chain 11182 chr15 102531392 + 88112721 88112847 L1PA5 6144 - 1 127 155503 126 chain 2911 chr15 102531392 + 88121154 88121198 MIRb 242 + 98 141 226843 26 2 1 16 chain 62648 chr15 102531392 + 88136561 88137263 L1PA5 6144 + 5429 6131 51608 702 chain 5426 chr15 102531392 + 88143456 88143615 L1MD1 2063 - 1064 1228 190739 27 77 82 55 chain 4899 chr15 102531392 + 88228765 88228825 MER45A 178 - 49 109 196282 60 chain 180356 chr15 102531392 + 88240050 88242137 L1PA6 6164 + 3968 6065 20959 28 7 9 606 2 0 673 0 8 5 2 0 11 1 0 394 0 1 14 0 5 112 1 0 231 chain 39783 chr15 102531392 + 88280541 88281054 L1PA7 6471 - 4 538 69651 137 0 1 5 0 1 141 0 1 215 0 18 15 chain 9464 chr15 102531392 + 88281066 88281166 AluYb8 318 - 12 112 163257 100 chain 5509 chr15 102531392 + 88299752 88299815 MSTD 398 - 335 398 189949 63 chain 251012 chr15 102531392 + 88313940 88317274 L1PA8 5853 + 2530 5853 16178 109 13 1 7 0 23 218 1 0 43 22 11 110 2 17 14 1 0 371 0 1 775 0 1 109 17 17 49 15 0 594 1 0 9 2 0 85 1 0 470 1 0 45 12 10 51 27 25 49 15 11 5 0 2 91 chain 50589 chr15 102531392 + 88332219 88332792 L1PA4 6152 + 5569 6143 58590 423 1 2 149 chain 127796 chr15 102531392 + 88349564 88351358 L1PB1 5432 - 13 1780 28619 15 1 0 13 1 0 21 1 0 26 2 0 12 1 0 4 3 1 30 14 1 13 7 6 36 10 9 11 2 1 50 18 12 14 1 0 10 1 0 20 1 0 11 7 0 322 10 23 50 2 3 76 7 0 129 15 20 372 1 0 121 0 1 254 5 6 74 chain 12168 chr15 102531392 + 88374198 88374337 L1HS 6032 + 0 140 151543 95 0 1 44 chain 39918 chr15 102531392 + 88374337 88374786 LTR7 482 + 0 482 69434 263 1 32 91 0 2 94 chain 293280 chr15 102531392 + 88374788 88378536 HERVH-int 3825 + 0 3825 13805 212 0 11 309 66 0 38 1 0 9 2 1 9 4 0 14 49 1 15 1 0 12 3 0 24 4 3 22 0 20 25 68 5 49 1 0 444 15 0 201 0 4 66 1 2 189 4 31 69 0 1 468 0 2 864 8 218 254 3 8 225 chain 4917 chr15 102531392 + 88375314 88375370 HERVH-int 3825 + 476 532 196091 56 chain 13886 chr15 102531392 + 88379803 88380032 LTR7 482 + 0 230 144964 86 50 0 11 1 51 77 0 1 4 chain 17062 chr15 102531392 + 88380032 88380244 LTR7 482 + 261 473 135423 24 14 13 66 0 1 108 chain 223810 chr15 102531392 + 88380568 88383010 L1PA3long 6157 + 3715 6157 17664 2442 chain 9961 chr15 102531392 + 88413260 88413410 L1PB1 5432 + 4958 5103 160772 37 12 6 50 1 2 50 chain 54289 chr15 102531392 + 88438600 88439421 MER4E 760 + 18 737 56173 43 0 1 86 0 10 12 13 6 248 91 0 35 0 1 69 11 0 85 1 0 68 7 3 52 chain 5056 chr15 102531392 + 88458213 88458338 HAL1-2a_MD 234 - 145 234 194574 26 17 8 8 3 0 40 24 0 7 chain 17889 chr15 102531392 + 88506744 88506976 MER47A 366 + 108 339 133139 173 1 0 58 chain 56368 chr15 102531392 + 88532251 88532888 L1PA5 6144 + 5501 6139 54922 500 0 1 137 chain 51529 chr15 102531392 + 88582866 88583456 LTR10C 591 - 0 591 57945 273 0 1 317 chain 29307 chr15 102531392 + 88600119 88600429 AluYg6 310 + 0 310 87536 310 chain 29154 chr15 102531392 + 88637415 88637736 AluYb8 318 + 0 318 88290 126 3 0 192 chain 116918 chr15 102531392 + 88643955 88645256 L1PA4 6152 + 4848 6151 32152 1117 0 1 105 0 1 79 chain 39159 chr15 102531392 + 88666736 88667304 MER4B 649 - 8 642 70532 8 1 0 69 1 0 205 17 43 117 0 42 44 2 1 52 15 16 37 chain 24452 chr15 102531392 + 88681352 88681656 AluY 311 + 0 298 107790 105 1 0 22 5 0 171 chain 28745 chr15 102531392 + 88743642 88744015 THE1C 375 + 0 375 90146 107 10 11 66 1 2 189 chain 4276 chr15 102531392 + 88746832 88746917 L1MA4 2864 + 2724 2801 203518 14 8 2 25 5 3 33 chain 20031 chr15 102531392 + 88747108 88747387 L1PA8 5853 - 0 273 127040 93 1 0 18 1 0 51 5 4 8 2 1 70 2 0 28 chain 26659 chr15 102531392 + 88749288 88749605 AluYf4 310 + 0 304 97457 126 6 0 165 2 0 6 5 0 7 chain 3620 chr15 102531392 + 88770098 88770143 MIRb 242 - 108 153 213334 45 chain 22546 chr15 102531392 + 88847158 88847440 AluSp 311 + 10 288 117818 47 5 0 147 2 3 81 chain 27131 chr15 102531392 + 88857756 88858117 THE1B 368 - 0 368 95829 75 1 0 84 4 0 17 2 0 11 10 9 113 0 15 44 chain 6705 chr15 102531392 + 88870342 88870476 MER58A 224 + 47 192 179651 36 43 54 55 chain 16093 chr15 102531392 + 88870515 88870841 MER1B 344 - 0 307 138079 58 12 20 29 1 2 18 4 0 12 14 0 21 8 7 14 13 3 65 17 18 40 chain 6390 chr15 102531392 + 88895027 88895100 MLT1A 405 + 297 370 182100 73 chain 542968 chr15 102531392 + 88900297 88906432 L1PA4 6152 + 0 6151 2347 130 14 0 12 0 14 215 0 2 87 6 0 120 1 0 613 3 0 5 5 8 288 0 1 1670 0 1 759 0 1 428 0 4 300 3 13 712 0 1 226 0 3 538 chain 7697 chr15 102531392 + 88909549 88909768 LTR12 884 + 66 401 172952 11 2 1 12 36 0 8 25 90 62 5 4 11 1 92 20 2 0 24 chain 24664 chr15 102531392 + 88963738 88964119 LTR47A 437 - 31 437 106648 115 6 11 56 14 0 25 21 19 18 6 42 120 chain 15629 chr15 102531392 + 89000121 89000426 Tigger4b 360 + 22 351 139499 11 1 8 25 55 77 48 8 6 81 1 0 25 4 3 11 1 0 34 chain 125226 chr15 102531392 + 89066640 89068195 SVA_B 1603 + 2 1600 29314 12 5 0 5 0 1 21 7 0 486 40 0 124 37 0 182 7 89 23 0 41 267 16 26 312 2 0 9 chain 2399 chr15 102531392 + 89067176 89067205 SVA_B 1603 + 451 480 227113 29 chain 38725 chr15 102531392 + 89081364 89081857 LTR6B 557 + 0 541 71117 38 0 46 275 9 10 32 1 0 93 1 2 4 0 1 40 chain 75270 chr15 102531392 + 89083782 89084750 LTR5_Hs 974 + 0 974 45884 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 32689 chr15 102531392 + 89087066 89087951 HERVS71-int 4705 + 3281 4098 79709 19 94 80 16 1 0 17 2 0 57 38 32 23 1 0 17 19 18 50 7 5 16 1 0 35 1 0 11 3 0 11 1 0 5 15 12 5 2 0 5 1 0 28 1 0 10 5 2 4 1 0 28 10 6 20 13 10 33 6 3 20 1 0 17 9 6 26 6 4 10 1 0 11 11 10 39 16 13 12 22 20 46 1 0 5 chain 40495 chr15 102531392 + 89088952 89089461 LTR6B 557 + 0 557 68597 38 0 46 275 9 10 32 1 0 92 0 1 6 0 1 56 chain 7316 chr15 102531392 + 89090241 89090324 MER41D 557 - 474 557 175327 83 chain 38972 chr15 102531392 + 89090498 89090949 LTR7 482 - 0 482 70777 187 0 31 264 chain 54938 chr15 102531392 + 89092212 89094526 HERVH-int 3825 - 0 2343 13222 561 0 1 814 0 1 732 4 31 203 chain 34227 chr15 102531392 + 89094542 89094926 L1PA3long 6157 - 0 382 77315 5 2 0 377 chain 163279 chr15 102531392 + 89094969 89097688 SVA_F 1814 - 19 1804 22912 608 1 0 10 1 0 89 947 0 126 0 15 10 0 1 48 2 0 228 0 1 649 chain 24227 chr15 102531392 + 89095678 89095936 SVA_F 1814 - 550 808 103933 143 1 0 27 0 1 87 chain 18654 chr15 102531392 + 89095955 89096152 SVA_F 1814 - 600 797 131074 197 chain 2689 chr15 102531392 + 89096152 89096180 SVA_F 1814 - 798 826 198450 28 chain 1572 chr15 102531392 + 89096204 89096249 SVA_F 1814 - 866 911 137709 45 chain 17256 chr15 102531392 + 89096255 89096457 SVA_F 1814 - 676 894 134907 127 1 0 49 0 16 9 0 1 16 chain 398 chr15 102531392 + 89096469 89096520 SVA_F 1814 - 907 959 185178 19 0 1 32 chain 2142 chr15 102531392 + 89096597 89096620 SVA_F 1814 - 649 672 237265 23 chain 500119 chr15 102531392 + 89097829 89103494 L1HS 6032 - 371 6028 6833 44 11 6 1677 5 1 793 0 2 8 2 0 2340 0 2 532 1 0 252 chain 36562 chr15 102531392 + 89103500 89105040 HERVH-int 3825 - 2345 3825 13222 257 15 0 6 1 0 438 1 0 49 2 1 9 21 0 26 66 1 38 0 51 24 2 1 9 1 0 39 5 0 531 chain 39364 chr15 102531392 + 89105042 89105494 LTR7 482 - 0 482 70226 190 0 31 12 1 0 249 chain 38725 chr15 102531392 + 89132122 89133113 L1PB1 5432 + 4783 5411 71116 14 19 19 78 0 1 208 46 11 24 1 0 9 16 11 9 2 0 53 2 1 16 1 0 35 0 3 5 1 0 16 4 0 15 8 0 16 325 19 24 1 0 21 1 0 13 1 0 7 chain 35657 chr15 102531392 + 89165619 89166125 LTR2B 499 - 0 499 75325 35 19 23 192 9 4 224 12 6 15 chain 25105 chr15 102531392 + 89176251 89176543 AluSp 311 - 18 310 104257 292 chain 71768 chr15 102531392 + 89208913 89211461 L1MA3 4352 + 0 1137 47581 15 29 22 51 666 5 63 1 0 4 20 20 66 692 0 59 1 0 8 10 4 160 5 20 276 2 0 20 0 3 42 0 2 28 11 7 125 0 1 18 55 1 5 0 2 44 18 17 12 22 17 20 chain 29083 chr15 102531392 + 89212501 89212807 AluYa5 310 - 4 310 88619 306 chain 33163 chr15 102531392 + 89231866 89232303 LTR22A 463 - 0 448 78963 88 0 14 66 0 1 22 9 0 45 5 7 49 0 1 12 0 2 141 chain 25959 chr15 102531392 + 89289669 89290110 MER4A1 472 + 8 453 100180 14 15 15 193 11 32 12 7 13 17 30 0 85 7 14 50 chain 3595 chr15 102531392 + 89297759 89297811 L1MC4 1079 - 615 665 213734 36 2 0 14 chain 27086 chr15 102531392 + 89298104 89298834 MSTA 426 - 3 426 95983 118 20 19 43 9 7 29 1 2 5 307 0 68 1 2 22 4 5 103 chain 43374 chr15 102531392 + 89298959 89299506 MLT2A2 560 - 0 560 64964 69 0 3 75 0 11 222 1 0 180 chain 7830 chr15 102531392 + 89301145 89301240 AluY 311 + 27 122 172126 95 chain 4729 chr15 102531392 + 89373751 89373810 Tigger3c 601 + 326 385 198177 59 chain 25695 chr15 102531392 + 89459441 89459741 AluSp 311 + 1 304 101302 90 0 3 210 chain 41065 chr15 102531392 + 89464847 89465814 HUERS-P1-int 2401 + 152 970 67820 14 9 4 31 9 0 4 48 0 25 1 0 10 21 22 18 4 0 11 11 8 14 44 20 11 6 2 13 24 0 13 1 0 13 2 0 43 3 0 8 0 3 5 11 7 22 1 0 8 3 1 22 18 0 25 8 5 12 0 3 23 2 0 23 4 18 37 1 0 42 4 0 27 2 1 8 0 1 23 0 1 74 11 3 65 9 11 22 4 0 30 0 2 10 chain 4853 chr15 102531392 + 89467857 89467921 HUERS-P1-int 2401 + 2077 2139 196753 47 2 0 15 chain 43716 chr15 102531392 + 89468224 89468727 MER9a2 513 + 0 513 64552 32 0 12 336 2 0 133 chain 75973 chr15 102531392 + 89477415 89478465 MER11B 1079 - 28 1079 45498 170 0 1 12 0 1 41 5 6 51 1 3 25 10 0 65 0 4 119 12 11 4 0 1 101 12 11 41 30 33 351 chain 3595 chr15 102531392 + 89480769 89480810 MER4D0 881 + 840 881 213745 41 chain 157727 chr15 102531392 + 89483975 89485921 SVA_F 1814 - 0 1805 23631 627 1 0 10 2 0 172 1 0 4 180 0 39 0 15 82 50 0 89 0 77 79 0 1 610 chain 16067 chr15 102531392 + 89484793 89484965 SVA_F 1814 - 637 809 135331 172 chain 2751 chr15 102531392 + 89485093 89485130 SVA_F 1814 - 899 935 192228 17 1 0 19 chain 35721 chr15 102531392 + 89494208 89494723 MER41A 554 + 0 523 75238 83 15 17 256 3 1 73 0 1 7 9 10 15 13 19 41 chain 13093 chr15 102531392 + 89495537 89495689 LTR2 463 - 311 463 147870 152 chain 8211 chr15 102531392 + 89502828 89502946 Ricksha 1077 + 426 539 169887 14 7 0 53 0 2 44 chain 15512 chr15 102531392 + 89506768 89506973 L1MA5A 2387 - 1229 1437 139849 5 0 1 25 4 6 171 chain 6550 chr15 102531392 + 89511929 89512034 L1PA15 4387 - 263 367 180851 19 14 13 72 chain 5901 chr15 102531392 + 89517119 89517191 MSTA 426 + 354 426 186178 72 chain 20251 chr15 102531392 + 89524088 89524339 Tigger3c 601 + 311 564 126382 69 0 1 133 0 1 49 chain 51112 chr15 102531392 + 89528528 89529811 PABL_A 660 - 0 650 58245 290 1 6 16 8 3 235 631 0 22 2 0 78 chain 35104 chr15 102531392 + 89539476 89539953 L1PA8 5853 - 0 463 76044 89 5 4 19 2 1 25 6 0 27 1 0 9 1 0 71 2 0 46 1 0 41 1 0 131 chain 10903 chr15 102531392 + 89539953 89540081 L1PA8 5853 + 5240 5368 156578 128 chain 40081 chr15 102531392 + 89541092 89541696 MER4A1_ 611 + 0 586 69211 20 1 5 4 0 1 99 20 0 57 0 4 69 2 0 20 0 8 91 1 0 4 16 10 33 7 0 64 1 2 95 chain 48296 chr15 102531392 + 89554958 89555844 LTR10C 591 + 0 591 60246 220 0 12 103 308 0 197 0 1 58 chain 24554 chr15 102531392 + 89555303 89555589 AluY 311 + 10 298 107228 254 0 2 32 chain 3669 chr15 102531392 + 89558827 89558913 L1MB7 1623 + 1452 1529 212419 27 1 0 14 10 5 15 8 5 11 chain 24648 chr15 102531392 + 89569943 89570235 AluYk4 311 - 19 311 106731 292 chain 91535 chr15 102531392 + 89574129 89575449 LTR12C 1709 - 0 1709 39118 84 4 3 60 0 101 127 37 36 70 44 13 97 3 1 5 1 0 131 0 278 174 2 1 14 11 12 27 12 11 75 8 51 57 0 4 277 chain 538694 chr15 102531392 + 89587136 89593138 L1PA3long 6157 - 0 6150 3042 1510 0 5 284 0 4 977 1 0 118 0 1 74 0 1 1141 1 0 325 0 1 572 0 13 227 6 130 613 8 9 145 chain 19878 chr15 102531392 + 89599664 89599898 AluY 311 + 73 307 127558 234 chain 51384 chr15 102531392 + 89610293 89610918 LTR14B 630 - 0 630 58038 78 0 5 524 1 0 4 0 1 18 chain 7274 chr15 102531392 + 89616246 89616340 MER53 195 - 101 195 175625 94 chain 9004 chr15 102531392 + 89621579 89621690 MER4C 627 + 0 112 165573 91 0 1 20 chain 4871 chr15 102531392 + 89650059 89650113 MLT1C 463 + 63 117 196580 54 chain 3046 chr15 102531392 + 89655350 89655386 MER102c 337 - 68 104 224101 36 chain 14861 chr15 102531392 + 89673682 89673875 MER107 203 + 3 203 141753 143 0 3 5 1 2 6 0 3 38 chain 3082 chr15 102531392 + 89738101 89738137 MER5B 177 - 68 104 223299 36 chain 4892 chr15 102531392 + 89764544 89764605 MER53 195 + 120 181 196355 61 chain 4177 chr15 102531392 + 89768762 89768809 MLT1B 390 - 244 291 204878 47 chain 38641 chr15 102531392 + 89776944 89777454 MER9a3 513 - 0 513 71234 76 6 7 156 19 18 145 0 1 90 0 2 18 chain 393951 chr15 102531392 + 89777457 89782399 HERVK9-int 4720 - 2 4649 10323 577 2 4 330 0 9 1409 0 1 127 313 0 674 0 2 373 1 0 333 0 4 590 0 3 120 1 0 38 1 0 53 chain 40274 chr15 102531392 + 89783024 89783534 MER9a3 513 - 0 513 68912 68 16 17 155 1 0 9 0 1 7 1 0 145 0 1 90 0 2 18 chain 51798 chr15 102531392 + 89793340 89793930 L1PA5 6144 + 5549 6138 57757 342 1 0 247 chain 115830 chr15 102531392 + 89839687 89840991 SVA_D 2077 - 261 2035 32521 310 0 241 111 0 16 66 0 51 35 1 0 1 0 38 30 1 0 152 0 40 163 0 76 303 0 10 131 chain 6539 chr15 102531392 + 89878303 89878376 tRNA-Arg-CGA_ 73 + 0 73 180936 73 chain 23057 chr15 102531392 + 90077409 90077757 THE1B 368 - 0 341 115371 49 5 13 41 21 0 71 0 2 17 4 3 127 1 6 12 chain 145942 chr15 102531392 + 90077757 90079384 L1P1 4361 - 377 2009 25178 1223 0 1 378 0 4 26 chain 29544 chr15 102531392 + 90079384 90079724 L1P1 4361 + 3990 4328 85418 160 1 0 155 1 0 23 chain 17240 chr15 102531392 + 90081949 90082130 AluYa5 310 - 2 183 134958 181 chain 25598 chr15 102531392 + 90099462 90099749 AluSp 311 + 10 296 101736 101 1 0 185 chain 146333 chr15 102531392 + 90100405 90102097 L1PA5 6144 - 1 1649 25113 171 28 8 1027 18 0 175 6 0 267 chain 3593 chr15 102531392 + 90122882 90122920 MSTC 436 + 0 38 213767 38 chain 15430 chr15 102531392 + 90146897 90147134 MER44A 345 - 1 262 140104 89 1 0 13 8 18 45 1 8 55 2 10 23 chain 3135 chr15 102531392 + 90148361 90148525 MER58A 224 - 10 177 222273 30 113 116 21 chain 541427 chr15 102531392 + 90177550 90183532 L1PA3long 6157 + 4 6156 2599 148 0 1 164 0 1 463 0 128 725 1 0 1617 0 10 630 4 7 47 0 16 78 0 4 307 0 4 527 0 4 1271 chain 7210 chr15 102531392 + 90257469 90257556 U6 107 + 7 94 175995 87 chain 5570 chr15 102531392 + 90269499 90269607 MER5A 189 - 56 153 189374 19 1 2 10 7 4 55 9 0 7 chain 10261 chr15 102531392 + 90322622 90322747 MLT1B 390 - 33 158 159317 125 chain 6273 chr15 102531392 + 90341201 90341272 MIRb 242 - 101 172 182981 71 chain 26477 chr15 102531392 + 90392924 90393274 L1PA7 6471 - 12 363 98135 45 0 1 80 0 1 6 1 0 17 12 13 165 1 0 23 chain 128617 chr15 102531392 + 90396753 90398778 SVA_F 1814 + 384 1814 28414 443 275 0 28 1 0 25 0 1 17 2 1 49 0 15 65 179 0 159 155 0 627 chain 14889 chr15 102531392 + 90397267 90397471 SVA_F 1814 + 847 1067 76249 8 1 0 31 0 2 4 1 0 56 14 29 87 0 1 2 chain 6423 chr15 102531392 + 90397658 90397746 SVA_F 1814 + 1204 1291 76249 70 1 0 17 chain 2655 chr15 102531392 + 90397776 90397822 SVA_F 1814 + 855 900 142923 38 1 0 7 chain 1789 chr15 102531392 + 90397996 90398027 SVA_F 1814 + 1011 1043 142923 27 0 1 4 chain 8570 chr15 102531392 + 90398045 90398133 SVA_F 1814 + 1089 1177 167908 88 chain 165574 chr15 102531392 + 90410281 90412816 SVA_F 1814 + 9 1814 22578 891 370 0 47 0 15 176 381 0 660 0 6 10 chain 7902 chr15 102531392 + 90411205 90411316 SVA_F 1814 + 916 1091 103357 31 0 15 27 8 57 45 chain 255 chr15 102531392 + 90411324 90411363 SVA_F 1814 + 972 1011 194772 39 chain 16252 chr15 102531392 + 90411365 90411542 SVA_F 1814 + 899 1091 79129 49 3 18 125 chain 3024 chr15 102531392 + 90411772 90411804 SVA_F 1814 + 855 887 224547 32 chain 7438 chr15 102531392 + 90411815 90411892 SVA_F 1814 + 1188 1265 169361 77 chain 13958 chr15 102531392 + 90411892 90412046 SVA_F 1814 + 1138 1291 144718 136 1 0 17 chain 9624 chr15 102531392 + 90412046 90412146 SVA_F 1814 + 989 1089 151336 100 chain 3796 chr15 102531392 + 90417596 90417665 LTR7B 505 - 10 78 210445 38 17 16 14 chain 5671 chr15 102531392 + 90434528 90434609 L1MB8 1703 + 978 1057 188378 5 2 0 74 chain 24036 chr15 102531392 + 90435915 90436195 AluYk4 311 - 32 311 110134 119 7 6 154 chain 21509 chr15 102531392 + 90437926 90438192 AluSz 310 + 2 266 122110 235 6 4 25 chain 3990 chr15 102531392 + 90493378 90493425 Tigger4 2445 - 1204 1251 207540 47 chain 95527 chr15 102531392 + 90520681 90521772 SVA_D 2077 + 0 1851 37950 4 1 0 21 5 0 132 0 39 263 0 76 118 0 37 68 0 80 71 0 534 408 chain 15653 chr15 102531392 + 90525136 90525403 LTR23 429 + 0 228 139422 4 1 0 88 27 11 37 23 0 82 0 1 5 chain 23979 chr15 102531392 + 90599370 90599658 AluSp 311 + 11 294 110449 117 4 0 13 1 0 153 chain 21936 chr15 102531392 + 90635211 90635524 MER1A 529 + 207 514 120474 125 7 9 115 20 12 46 chain 16618 chr15 102531392 + 90639548 90639842 L1MB3 1562 + 762 1037 136616 29 3 0 100 45 28 20 9 11 22 1 0 65 chain 9163 chr15 102531392 + 90655896 90656030 MER2 342 + 82 218 164742 35 1 0 38 6 9 54 chain 11856 chr15 102531392 + 90657152 90657300 LTR8A 794 + 12 160 152807 148 chain 3926 chr15 102531392 + 90658663 90658706 LTR54 533 - 135 178 208473 43 chain 14559 chr15 102531392 + 90676014 90676213 LTR7B 505 + 0 277 142709 108 0 10 53 1 0 4 13 82 20 chain 205108 chr15 102531392 + 90676750 90679549 HERVH-int 3825 + 31 3054 18849 56 0 1 228 29 28 66 11 10 37 23 293 29 1 0 78 1 6 366 30 0 201 9 0 351 53 38 102 1 0 4 1 2 163 0 5 206 0 2 23 0 1 19 0 4 58 0 1 5 5 4 125 5 6 227 0 2 24 11 0 48 4 6 160 1 0 38 chain 26768 chr15 102531392 + 90681145 90681522 LTR7B 505 + 0 495 97092 106 0 11 54 13 26 38 1 22 21 0 74 122 0 1 5 2 0 15 chain 40439 chr15 102531392 + 90682626 90683138 MER9a3 513 - 0 513 68677 68 2 0 11 4 5 64 0 1 108 1 0 145 0 1 93 1 2 15 chain 25244 chr15 102531392 + 90757588 90757886 AluSp 311 + 1 303 103507 127 0 4 171 chain 26592 chr15 102531392 + 90829022 90829321 AluY 311 + 5 304 97690 299 chain 9355 chr15 102531392 + 90837255 90837411 7SLRNA 320 + 103 284 163775 110 31 56 15 chain 24877 chr15 102531392 + 90856371 90856654 AluSp 311 - 17 301 105470 268 0 1 15 chain 17813 chr15 102531392 + 90857253 90857482 L1M1 2793 - 108 336 133360 11 1 0 24 0 1 21 1 0 171 chain 9792 chr15 102531392 + 90866407 90866525 MER41B 635 - 0 123 161642 81 0 5 37 chain 18499 chr15 102531392 + 90871736 90871934 L1PA3long 6157 - 15 213 131500 198 chain 22330 chr15 102531392 + 90877257 90877685 MER4E 760 - 0 426 118777 221 45 41 50 64 50 9 0 14 11 4 6 24 chain 90669 chr15 102531392 + 90889792 90890810 LTR5A 1029 - 0 1017 39399 882 1 0 135 chain 29830 chr15 102531392 + 90902293 90902603 AluYb8 318 - 8 318 85351 310 chain 53060 chr15 102531392 + 90918361 90919034 LTR12_ 688 + 0 657 56981 163 24 7 89 1 0 82 0 2 314 chain 24214 chr15 102531392 + 90937092 90937389 AluSp 311 + 9 304 109123 58 2 1 43 1 0 193 chain 43912 chr15 102531392 + 90952986 90953475 L1PA5 6144 - 604 1095 64319 390 0 2 99 chain 52554 chr15 102531392 + 90953479 90954086 L1PA5 6144 + 5545 6144 57264 452 7 0 34 1 0 113 chain 140697 chr15 102531392 + 90959253 90961191 L1PA5 6144 - 0 1746 26039 64 1 0 122 0 116 368 309 0 85 1 4 98 0 4 519 5 0 366 chain 16074 chr15 102531392 + 91003292 91003495 MER41A 554 - 6 214 138137 174 1 6 28 chain 25718 chr15 102531392 + 91014734 91015031 AluSp 311 - 15 311 101227 164 1 0 132 chain 3383 chr15 102531392 + 91049922 91049993 MER20 218 + 89 159 217410 38 21 20 12 chain 6282 chr15 102531392 + 91087235 91087607 MLT1C 463 - 0 374 182938 77 275 277 20 chain 30296 chr15 102531392 + 91173990 91174308 AluYb8 318 - 0 318 83940 318 chain 157003 chr15 102531392 + 91179049 91180787 L1PA4 6152 + 4400 6151 23721 878 0 4 756 0 1 95 0 8 9 chain 20953 chr15 102531392 + 91230493 91230830 MER2 342 - 0 342 124088 120 18 13 93 1 0 29 26 37 50 chain 12218 chr15 102531392 + 91235993 91236286 AluSq10 312 - 12 312 151352 117 129 1 25 0 135 22 chain 7679 chr15 102531392 + 91246124 91246231 MLT2B4 540 - 427 540 173056 71 1 4 22 0 3 13 chain 25446 chr15 102531392 + 91291335 91291637 AluSp 311 - 9 311 102473 302 chain 12589 chr15 102531392 + 91324033 91324216 MER2 342 + 148 325 149881 20 7 0 131 8 9 17 chain 6366 chr15 102531392 + 91324491 91324571 MER30 238 - 2 79 182275 45 3 0 32 chain 4389 chr15 102531392 + 91339757 91339827 MER58A 224 - 139 219 202095 42 9 19 19 chain 7114 chr15 102531392 + 91369169 91369304 LTR12C 1709 + 928 1063 150512 135 chain 14059 chr15 102531392 + 91369330 91369557 LTR12C 1709 + 651 877 144352 98 41 0 68 0 40 20 chain 2492 chr15 102531392 + 91369439 91369469 LTR12C 1709 + 956 986 207585 30 chain 24099 chr15 102531392 + 91378355 91378626 AluSg7 307 - 14 286 109748 161 0 1 110 chain 21151 chr15 102531392 + 91444580 91444854 L1PA8 5853 + 5566 5848 123368 43 2 0 25 0 1 47 1 0 35 0 12 11 2 1 19 1 0 88 chain 4033 chr15 102531392 + 91507483 91507531 L1ME1 1623 + 1210 1258 206878 48 chain 7220 chr15 102531392 + 91518830 91518921 MLT1B 390 + 7 98 175938 91 chain 9911 chr15 102531392 + 91532234 91532480 L1MB8 1703 + 949 1211 161011 66 1 4 33 107 120 39 chain 24891 chr15 102531392 + 91570209 91570502 AluYk4 311 - 8 300 105405 185 1 0 107 chain 48614 chr15 102531392 + 91589154 91589724 L1PA5 6144 - 9 577 60020 136 2 0 8 0 2 104 2 0 318 chain 66725 chr15 102531392 + 91603316 91604090 L1PA5 6144 + 5373 6143 49769 432 0 1 189 3 0 25 2 0 123 chain 396287 chr15 102531392 + 91633538 91637939 L1PA4 6152 + 1732 6143 10228 2344 0 5 1223 1 5 6 0 1 827 chain 6442 chr15 102531392 + 91678380 91678474 MER106A 234 - 78 173 181697 56 4 5 34 chain 40562 chr15 102531392 + 91686615 91687126 MER75 514 + 0 512 68491 489 1 2 21 chain 7847 chr15 102531392 + 91695317 91695403 LTR12C 1709 - 330 416 172035 86 chain 118964 chr15 102531392 + 91706003 91707373 L1PA5 6144 - 1 1379 31432 146 1 8 255 1 0 36 1 2 456 0 1 474 chain 19281 chr15 102531392 + 91707373 91707593 L1PA5 6144 + 4526 4746 129028 220 chain 507466 chr15 102531392 + 91719121 91724707 L1PA3long 6157 - 0 5587 6367 339 1 0 1873 0 1 1624 0 1 404 2 1 393 0 1 950 chain 8428 chr15 102531392 + 91747182 91747317 MER101B 537 - 156 300 168696 58 23 32 54 chain 13547 chr15 102531392 + 91760649 91760806 L1PA5 6144 + 5988 6141 146179 147 4 0 6 chain 8570 chr15 102531392 + 91768766 91768865 L1PA5 6144 - 1 100 167905 99 chain 22855 chr15 102531392 + 91791285 91791537 AluY 311 + 16 269 116305 116 0 1 136 chain 13730 chr15 102531392 + 91798573 91798837 L1PB1 5432 + 5178 5420 145506 42 2 1 16 1 0 40 6 5 14 1 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 26067 chr15 102531392 + 91803895 91804228 THE1A 353 - 0 333 99766 256 2 1 48 0 1 27 chain 26536 chr15 102531392 + 91821641 91821932 AluYb8 318 + 16 312 97909 107 2 0 129 0 7 53 chain 14439 chr15 102531392 + 91886559 91886717 L1PA4 6152 - 261 419 143082 158 chain 86302 chr15 102531392 + 91888010 91889070 L1PA5 6144 - 0 1074 41039 136 24 26 406 0 11 257 0 1 237 chain 15178 chr15 102531392 + 91894158 91894384 MER2 342 - 0 228 140828 36 15 16 35 6 7 134 chain 3697 chr15 102531392 + 91898963 91899010 MIRb 242 - 107 155 211966 36 0 1 11 chain 51164 chr15 102531392 + 91910055 91910627 L1PA4 6152 + 5571 6143 58208 572 chain 23604 chr15 102531392 + 91916191 91916491 L1PREC2 3366 + 1889 2189 112563 73 2 1 218 0 1 7 chain 15081 chr15 102531392 + 91920892 91921062 L1PA3long 6157 - 0 170 141084 170 chain 20393 chr15 102531392 + 91925254 91925510 L1PA7 6471 - 12 264 125915 133 22 18 101 chain 44462 chr15 102531392 + 91925514 91926139 L1PA8 5853 + 5220 5853 63623 153 6 9 155 0 1 26 1 0 44 2 0 54 33 42 29 4 0 4 1 4 19 1 0 93 chain 106440 chr15 102531392 + 91930323 91931867 L1MA2 4263 - 163 1718 35140 44 23 16 11 0 4 59 1 0 8 1 0 38 0 1 118 1 0 5 11 28 106 2 1 74 7 3 230 1 0 4 1 2 83 0 1 102 1 6 27 0 2 209 9 7 6 4 0 8 0 9 116 22 17 105 12 10 95 chain 5718 chr15 102531392 + 91948857 91948926 MER65A 464 - 36 105 187952 69 chain 23891 chr15 102531392 + 91949824 91950103 AluY 311 + 26 306 110951 106 0 1 173 chain 100520 chr15 102531392 + 91957039 91958618 L1MA3 4352 - 0 1555 36623 22 18 13 29 1 0 6 1 0 24 2 0 23 4 0 80 0 1 19 89 66 63 15 19 193 1 0 77 0 1 12 5 4 205 71 78 36 1 0 81 0 1 46 1 2 11 2 1 264 0 1 177 chain 5074 chr15 102531392 + 91975774 91975893 MER96B 391 - 67 178 194379 16 14 15 25 7 8 39 10 0 8 chain 4070 chr15 102531392 + 91983219 91983289 L1PB1 5432 - 19 86 206314 9 1 0 13 1 0 21 7 6 18 chain 398489 chr15 102531392 + 91993786 91999185 L1PB1 5432 - 12 5407 10154 16 1 0 12 1 0 22 1 0 24 26 21 17 25 12 13 7 6 40 1 0 16 2 1 52 31 24 6 2 0 24 1 0 9 9 2 111 1 4 85 1 3 34 13 11 20 6 0 6 3 4 10 1 0 191 0 3 120 9 10 48 0 5 473 0 3 6 6 3 13 8 4 201 12 0 128 1 12 65 0 4 83 1 0 194 13 17 231 0 1 67 1 5 98 10 1 186 0 2 181 0 4 136 0 4 102 4 0 142 0 1 99 0 2 42 0 2 105 0 11 88 3 0 116 0 5 52 0 4 34 1 0 97 0 5 9 4 0 107 0 1 21 2 0 218 1 2 304 0 1 17 0 1 137 0 4 39 5 4 76 1 0 46 12 10 158 4 6 107 0 1 115 chain 9567 chr15 102531392 + 92000059 92000268 L1PBa1 4058 - 3850 4046 162752 100 65 62 10 10 0 24 chain 97235 chr15 102531392 + 92030493 92031780 HSMAR1 1287 - 0 1287 37505 287 0 1 389 5 6 53 9 10 172 0 1 90 3 0 5 8 10 138 3 0 108 2 1 4 0 1 11 chain 8648 chr15 102531392 + 92036183 92036289 MER44A 345 - 119 225 167488 106 chain 15731 chr15 102531392 + 92038470 92038651 L1PA4 6152 + 5956 6136 139169 54 1 0 126 chain 535254 chr15 102531392 + 92043895 92049875 L1PA3long 6157 + 45 6156 3561 107 1 2 588 1 0 25 9 137 1423 0 2 222 1 0 637 0 1 499 2 1 414 0 2 2051 chain 45087 chr15 102531392 + 92067447 92067999 LTR19B 566 + 8 566 62956 34 1 0 56 0 7 193 2 0 134 0 2 81 0 1 18 6 5 27 chain 19965 chr15 102531392 + 92104049 92104319 AluSc8 310 + 23 309 127257 23 8 21 56 1 0 9 0 3 148 0 1 25 chain 368221 chr15 102531392 + 92122737 92126919 L1PA4 6152 - 0 4190 11150 115 24 31 7 7 0 676 1 2 420 0 4 237 0 1 979 0 1 980 0 5 362 5 0 23 0 1 346 chain 16061 chr15 102531392 + 92126921 92127099 L1P1 4361 + 1336 1514 138175 178 chain 60091 chr15 102531392 + 92156199 92156858 L1PA3long 6157 - 0 659 52777 659 chain 56750 chr15 102531392 + 92156858 92157474 L1PA3long 6157 + 4856 5472 54686 616 chain 33620 chr15 102531392 + 92160002 92160371 L1PA3long 6157 + 5788 6157 78210 369 chain 94313 chr15 102531392 + 92185455 92186503 L1PA5 6144 - 12 1060 38257 1048 chain 4677 chr15 102531392 + 92197924 92197986 MADE1 96 + 34 96 198787 11 0 1 23 1 0 27 chain 6368 chr15 102531392 + 92198914 92199046 LTR12 884 + 210 340 182257 40 26 0 20 0 25 21 4 3 21 chain 2731 chr15 102531392 + 92200424 92200495 Charlie8 480 - 56 138 229731 25 28 39 18 chain 22565 chr15 102531392 + 92231038 92231318 AluSq4 311 + 10 289 117742 118 1 0 161 chain 30975 chr15 102531392 + 92250263 92250628 L1PA7 6471 - 5 367 82560 8 3 0 354 chain 23975 chr15 102531392 + 92260612 92260879 L1PA4 6152 - 0 268 110479 113 0 1 154 chain 75880 chr15 102531392 + 92305995 92306811 L1PA2 6032 - 0 816 45558 816 chain 7987 chr15 102531392 + 92322892 92323007 MER44A 345 - 96 224 171134 21 0 3 33 1 10 5 0 1 55 chain 60648 chr15 102531392 + 92343315 92344043 L1PA7 6471 - 1 728 52494 14 1 0 288 0 1 34 1 0 390 chain 28737 chr15 102531392 + 92366468 92366880 MSTA 426 + 0 426 90178 204 6 10 20 14 16 50 9 17 109 chain 41919 chr15 102531392 + 92382814 92383354 MER41A 554 - 8 554 66734 72 0 5 23 3 0 45 5 7 4 0 1 126 0 1 262 chain 3240 chr15 102531392 + 92435259 92435296 LTR37B 484 - 400 437 220226 37 chain 20556 chr15 102531392 + 92439646 92440008 THE1B 368 + 0 368 125454 5 0 1 46 0 1 55 5 6 55 1 0 6 63 68 63 9 8 54 chain 24497 chr15 102531392 + 92501925 92502286 L1PB2 3958 + 3487 3838 107561 17 4 0 41 1 0 71 2 1 64 2 1 67 2 0 22 16 15 52 chain 47558 chr15 102531392 + 92505974 92506603 PABL_B 668 - 0 668 60802 22 3 0 296 1 0 12 0 5 40 0 44 13 4 5 133 8 1 97 chain 41362 chr15 102531392 + 92506802 92507349 LTR12_ 688 - 10 688 67455 101 0 1 44 0 103 80 10 12 191 13 38 108 chain 33733 chr15 102531392 + 92519843 92520276 MER11C 1089 - 16 454 78039 8 0 1 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 55 chain 24670 chr15 102531392 + 92558461 92558824 THE1D 372 - 0 370 106606 32 1 0 138 3 0 6 0 1 4 7 11 10 13 18 73 3 2 60 0 2 13 chain 5350 chr15 102531392 + 92574918 92575020 L1MA3 4352 - 25 122 191533 13 1 0 26 1 0 5 2 1 18 9 7 27 chain 133650 chr15 102531392 + 92581629 92583443 L1PA8 5853 + 3991 5853 27288 343 1 0 229 15 19 89 1 21 200 19 22 73 0 4 18 0 3 173 4 7 75 2 3 185 0 1 108 1 0 45 2 0 43 28 43 45 2 1 19 1 0 93 chain 14753 chr15 102531392 + 92603163 92603380 Tigger3 1187 - 114 331 142091 81 14 13 61 3 4 58 chain 358578 chr15 102531392 + 92680202 92684099 L1PA2 6032 - 0 3895 11387 2989 1 0 620 1 0 286 chain 5607 chr15 102531392 + 92733839 92733915 MER44B 551 - 1 76 189015 43 1 0 32 chain 8932 chr15 102531392 + 92742291 92742424 MSTB-int 1649 + 0 132 165969 67 11 10 55 chain 27806 chr15 102531392 + 92742971 92743370 L1PA8 5853 + 5437 5853 93674 60 0 5 62 1 0 40 12 14 62 1 0 7 10 9 36 0 14 13 2 0 4 0 1 89 chain 37268 chr15 102531392 + 92750383 92750877 LTR12 884 + 0 871 73141 24 1 0 66 1 3 127 0 141 16 2 0 94 0 1 89 0 236 74 chain 309727 chr15 102531392 + 92750939 92754974 HERV9-int 5642 + 4 5637 13014 132 1 2 325 0 1 42 0 1 86 13 11 112 6 0 82 1 0 231 80 0 74 94 9 424 3 2 598 0 4 100 0 1 415 0 1 183 0 1795 595 1 0 95 2 4 128 10 8 32 3 1 9 1 4 13 2 1 60 1 0 13 28 5 19 4 0 3 2 0 12 chain 45376 chr15 102531392 + 92757599 92758206 LTR12 884 + 0 884 62624 25 1 0 176 0 2 72 0 41 24 1 2 36 2 0 169 0 103 40 0 133 61 chain 4322 chr15 102531392 + 92784551 92784610 L1MA5A 2387 - 309 370 202938 45 1 3 13 chain 29586 chr15 102531392 + 92793171 92793493 AluYb8 318 - 0 318 86251 13 2 0 11 2 0 294 chain 81098 chr15 102531392 + 92794011 92794906 L1PA3long 6157 - 0 899 43142 849 0 4 46 chain 188939 chr15 102531392 + 92794913 92797013 L1PA3long 6157 + 3138 5243 20152 1089 1 0 16 1 2 399 0 5 594 chain 54606 chr15 102531392 + 92799313 92800024 L1P3 4156 - 249 977 55964 331 0 3 67 0 4 8 1 0 91 0 2 5 2 0 157 0 11 49 chain 123868 chr15 102531392 + 92800034 92801975 L1PA8A 6298 + 4654 6291 29744 132 0 3 35 3 0 38 4 3 607 0 4 8 0 2 23 4 3 34 312 0 27 1 0 23 5 8 107 21 22 65 18 0 8 2 20 54 0 1 90 0 1 207 1 0 112 chain 18617 chr15 102531392 + 92817698 92817923 AluY 311 + 85 311 131164 47 0 1 178 chain 15155 chr15 102531392 + 92829971 92830138 L1PA4 6152 + 5985 6152 140893 167 chain 44199 chr15 102531392 + 92841376 92841900 LTR17 781 + 255 781 63946 72 0 1 39 1 0 405 0 2 7 chain 166464 chr15 102531392 + 92842869 92844792 HERV17-int 4347 + 2420 4347 22463 701 1 2 213 6 10 983 1 0 18 chain 27252 chr15 102531392 + 92845105 92845430 LTR17 781 + 0 326 95428 307 0 1 18 chain 40029 chr15 102531392 + 92852355 92852804 L1PA7 6471 + 6009 6458 69281 449 chain 7939 chr15 102531392 + 92886051 92886204 MER5A 189 - 42 188 171388 61 12 13 5 2 0 34 3 0 5 8 5 23 chain 13454 chr15 102531392 + 92896469 92896640 THE1D 372 + 196 370 146515 33 1 0 82 0 5 20 2 1 33 chain 4950 chr15 102531392 + 92931699 92931763 MER63D 473 + 120 182 195709 57 2 0 5 chain 10800 chr15 102531392 + 92947638 92947769 L1MB3 1562 + 984 1115 156986 131 chain 4759 chr15 102531392 + 93003086 93003150 MER102b 334 + 76 140 197823 64 chain 36198 chr15 102531392 + 93022849 93023282 L1PA7 6471 - 12 446 74628 232 5 6 196 chain 8982 chr15 102531392 + 93026810 93026962 L1MA4 2864 + 1866 2005 165701 88 29 16 35 chain 23214 chr15 102531392 + 93029936 93030192 L1PA4 6152 - 2203 2459 114176 256 chain 195588 chr15 102531392 + 93030192 93032385 L1PA4 6152 + 3948 6143 19534 403 0 4 304 0 1 425 1 0 799 2 1 7 1 0 251 chain 28050 chr15 102531392 + 93054536 93054987 LTR7 482 + 0 470 92826 69 29 17 15 15 14 69 21 21 19 0 1 8 0 31 43 0 1 4 1 0 158 chain 318172 chr15 102531392 + 93055001 93058983 HERVH-int 3825 + 0 3825 12664 332 1 0 141 0 4 8 2 0 85 1 0 10 1 0 24 128 0 27 3 0 6 22 1 10 25 4 44 2 1 22 1 2 6 1 0 52 1 0 313 0 1 40 0 4 304 0 1 644 11 16 984 0 3 136 8 12 221 0 1 366 chain 3910 chr15 102531392 + 93055606 93055648 HERVH-int 3825 + 488 530 204720 42 chain 31478 chr15 102531392 + 93060247 93060655 LTR7 482 + 0 482 81677 71 6 44 109 0 1 8 0 31 118 0 4 96 chain 24449 chr15 102531392 + 93072778 93073132 THE1B 368 + 0 368 107814 44 5 20 17 1 2 89 1 0 19 7 1 112 2 0 21 0 7 36 chain 27908 chr15 102531392 + 93073166 93073514 THE1B-int 1605 + 34 381 93333 50 1 0 297 chain 7502 chr15 102531392 + 93073521 93073619 MSTA 426 + 317 414 174143 73 1 0 24 chain 23229 chr15 102531392 + 93077673 93078000 THE1C 375 + 0 336 114552 66 0 2 62 1 7 6 4 0 32 16 21 140 chain 26984 chr15 102531392 + 93078422 93078790 THE1B 368 - 0 368 96336 112 1 0 83 3 1 124 5 10 22 3 1 15 chain 26164 chr15 102531392 + 93083575 93083929 THE1A 353 - 0 353 99351 151 1 0 79 17 16 80 0 1 26 chain 3293 chr15 102531392 + 93087718 93087769 L1MC1 2226 + 2074 2119 219106 9 5 0 21 1 0 15 chain 26490 chr15 102531392 + 93109922 93110321 L1PA8 5853 - 0 416 98080 92 3 2 12 5 19 39 1 0 8 1 0 55 4 8 8 2 0 46 1 0 64 7 12 51 chain 28448 chr15 102531392 + 93147707 93148126 LTR2 463 - 0 457 91378 57 43 44 80 0 8 43 0 5 35 8 29 98 0 3 55 chain 56610 chr15 102531392 + 93150162 93150774 SVA_D 2077 + 1441 2064 54775 107 0 1 180 0 10 325 chain 30997 chr15 102531392 + 93189687 93190264 MER4B 649 + 15 619 82517 41 39 14 44 21 18 22 17 64 113 21 30 58 24 21 38 9 12 74 1 0 55 chain 17091 chr15 102531392 + 93225599 93225883 L1PB1 5432 - 12 272 135346 16 1 0 13 2 1 20 1 0 24 2 0 15 1 0 4 2 0 28 9 0 3 2 0 16 1 0 44 1 0 15 2 1 53 2 0 7 chain 12037 chr15 102531392 + 93235463 93235595 L1PA2 6032 + 5898 6032 152041 109 0 2 23 chain 25014 chr15 102531392 + 93240366 93240670 AluY 311 + 8 311 104711 268 6 5 30 chain 4971 chr15 102531392 + 93240726 93240784 MER34C 514 - 355 413 195465 58 chain 41150 chr15 102531392 + 93242410 93242925 L1P2 5180 - 4122 4673 67715 65 0 14 23 1 26 136 2 1 6 1 0 272 1 0 8 chain 157412 chr15 102531392 + 93242926 93244743 L1PA5 6144 + 4329 6144 23675 279 1 0 165 1 0 1208 1 6 5 5 0 152 chain 94163 chr15 102531392 + 93253529 93254812 LTR12C 1709 - 0 1709 38311 34 0 4 39 6 5 54 2 1 31 1 0 20 0 1 171 17 54 67 20 13 81 0 47 18 0 1 83 0 278 101 6 32 88 2 0 105 0 43 42 4 5 291 chain 57725 chr15 102531392 + 93265579 93266446 L1PB1 5432 - 5 1626 54120 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 25 12 12 6 5 22 22 802 75 4 3 20 0 2 329 6 0 155 0 3 62 chain 12270 chr15 102531392 + 93274860 93275111 L1PA16 3655 + 3393 3619 151114 42 0 1 110 71 50 7 5 0 16 chain 65044 chr15 102531392 + 93282232 93282989 L1PA6 6164 + 5394 6147 50552 395 3 0 317 1 0 41 chain 23965 chr15 102531392 + 93295443 93295782 THE1B 368 + 0 368 110541 44 6 21 104 1 0 30 2 0 20 0 9 78 5 13 49 chain 489679 chr15 102531392 + 93298380 93304009 L1PA5 6144 + 0 6142 7384 89 0 525 90 2 0 299 0 1 165 9 0 86 0 1 112 0 4 823 0 1 117 3 1 1755 0 5 699 1 0 610 1 0 752 9 0 7 chain 147327 chr15 102531392 + 93310694 93312596 SVA_D 2077 - 0 2077 24991 9 8 0 302 1 0 417 37 10 4 1 0 20 39 0 28 43 3 33 44 94 19 26 259 64 17 20 770 1 6 19 chain 2634 chr15 102531392 + 93311493 93311532 SVA_D 2077 - 1199 1238 76309 39 chain 2904 chr15 102531392 + 93311560 93311603 SVA_D 2077 - 1266 1309 76309 43 chain 2972 chr15 102531392 + 93311636 93311680 SVA_D 2077 - 1342 1386 76309 44 chain 1756 chr15 102531392 + 93311699 93311725 SVA_D 2077 - 1405 1431 76309 26 chain 25138 chr15 102531392 + 93314526 93314819 AluSq10 312 - 2 302 104083 44 0 7 249 chain 26959 chr15 102531392 + 93326003 93326314 AluY 311 + 2 311 96409 130 0 1 144 3 0 34 chain 5263 chr15 102531392 + 93332385 93332497 LTR12F 595 - 311 380 192385 39 43 0 30 chain 11727 chr15 102531392 + 93368474 93368644 MER39 703 - 0 169 153359 38 18 17 114 chain 23285 chr15 102531392 + 93384993 93385289 AluSp 311 - 19 311 114280 10 3 0 171 1 0 111 chain 24373 chr15 102531392 + 93394570 93394857 AluSp 311 - 24 311 108235 287 chain 24605 chr15 102531392 + 93401317 93401622 AluY 311 + 0 301 106964 21 0 4 107 0 1 161 9 0 7 chain 26345 chr15 102531392 + 93411670 93411966 AluYc3 301 - 6 301 98636 146 1 0 149 chain 29139 chr15 102531392 + 93433429 93433735 AluYb8 318 - 12 318 88367 306 chain 3709 chr15 102531392 + 93435573 93435708 MER58A 224 + 47 185 211819 34 76 79 25 chain 42450 chr15 102531392 + 93458953 93459570 MER4A1_ 611 + 0 611 66079 115 7 8 58 0 9 16 1 0 84 26 9 26 8 7 55 1 0 51 0 4 30 1 0 18 0 1 120 chain 26729 chr15 102531392 + 93475523 93475849 L1PA5 6144 - 0 324 97225 11 2 1 143 1 0 169 chain 7696 chr15 102531392 + 93501542 93501647 L1MB7 1623 - 448 556 172960 79 1 4 25 chain 8580 chr15 102531392 + 93501672 93501789 MER85 139 + 13 139 167839 77 3 12 37 chain 24042 chr15 102531392 + 93553122 93553592 L1PB1 5432 - 2 489 110108 4 1 0 12 1 0 10 1 0 11 1 0 23 2 1 23 2 0 14 1 0 5 8 6 13 2 1 11 13 17 24 1 35 52 18 12 12 2 1 5 1 0 24 13 11 160 chain 103420 chr15 102531392 + 93574875 93576152 LTR12C 1709 + 0 1709 35895 102 5 6 713 0 40 50 0 207 106 0 4 81 27 208 163 1 0 29 chain 33320 chr15 102531392 + 93582635 93583028 L1PA7 6471 - 12 402 78704 95 3 0 295 chain 4134 chr15 102531392 + 93638999 93639074 HERVL74-int 1085 - 1017 1084 205452 14 10 4 44 2 0 5 chain 12697 chr15 102531392 + 93651742 93651908 L1PA16 3655 + 3424 3587 149458 153 3 0 10 chain 2411 chr15 102531392 + 93663243 93663358 Tigger4a 237 + 0 39 234126 14 75 0 21 1 0 4 chain 22605 chr15 102531392 + 93691437 93691775 THE1B 368 - 0 368 117572 125 44 54 20 1 0 25 4 25 119 chain 14773 chr15 102531392 + 93692145 93692363 L1MA7 2200 + 1498 1720 142019 57 1 0 54 1 7 65 8 7 32 chain 13730 chr15 102531392 + 93700841 93701000 L1PA5 6144 - 0 159 145505 159 chain 41854 chr15 102531392 + 93705561 93706072 HERV1_LTRa 508 - 0 508 66822 38 4 0 326 0 1 47 1 2 53 1 0 41 chain 16973 chr15 102531392 + 93716987 93717210 L1PA8 5853 - 0 223 135659 69 0 4 20 1 0 19 2 1 52 1 0 3 1 0 55 chain 14363 chr15 102531392 + 93721382 93721647 MER4A1 472 - 295 472 143332 79 88 0 98 chain 48333 chr15 102531392 + 93729750 93730490 L1PB2 3958 - 120 858 60217 31 0 1 27 5 4 18 0 2 6 8 7 61 1 0 50 14 13 50 16 23 42 0 3 49 2 0 3 1 0 10 2 0 61 5 0 16 1 0 54 6 4 91 0 2 110 chain 43026 chr15 102531392 + 93764785 93765297 HERV1_LTRa 508 - 0 508 65392 38 4 0 381 1 2 46 1 0 41 chain 36298 chr15 102531392 + 93821601 93822050 LTR7 482 - 0 482 74506 49 12 14 122 0 31 266 chain 25012 chr15 102531392 + 93827627 93827918 AluY 311 + 2 293 104723 116 1 0 14 0 1 160 chain 6036 chr15 102531392 + 93829468 93829548 MADE1 96 - 0 96 184928 37 1 17 42 chain 25328 chr15 102531392 + 93846568 93846858 AluSp 311 + 4 297 103079 87 0 3 203 chain 32485 chr15 102531392 + 93846895 93847451 L1PB1 5432 + 4899 5422 80057 204 1 2 12 3 0 21 37 29 53 19 17 40 8 7 12 3 0 15 9 0 16 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 chain 8979 chr15 102531392 + 93858715 93858877 MLT1C 463 - 285 441 165718 6 1 0 47 42 37 66 chain 3750 chr15 102531392 + 93873191 93873237 MLT1C 463 - 285 331 211137 46 chain 6209 chr15 102531392 + 93874122 93874215 MER50 708 - 514 628 183508 62 9 30 22 chain 11762 chr15 102531392 + 93878563 93878795 L1PB1 5432 - 5 211 153207 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 1 0 3 1 0 17 46 31 41 1 0 15 chain 18106 chr15 102531392 + 93885473 93885712 AluSp 311 + 57 310 132580 52 1 2 147 0 24 11 11 0 17 chain 37746 chr15 102531392 + 93887537 93888340 HERV1_LTRa 508 + 0 508 72491 42 1 0 5 1 0 38 4 1 5 2 0 206 296 0 51 0 12 112 10 6 30 chain 40901 chr15 102531392 + 93908116 93908656 MER41A 554 + 0 554 68030 288 0 1 38 6 0 12 0 1 38 2 20 59 0 1 84 1 0 12 chain 24752 chr15 102531392 + 93911040 93911332 AluY 311 + 4 296 106156 292 chain 21033 chr15 102531392 + 93922871 93923165 AluSp 311 + 10 295 123797 19 1 0 11 10 8 81 1 0 160 5 0 6 chain 23884 chr15 102531392 + 93926901 93927198 AluY 311 + 10 306 110999 53 0 8 55 9 0 180 chain 533956 chr15 102531392 + 93933206 93939322 L1PA5 6144 - 5 6141 3709 145 6 0 93 1 0 1553 0 4 355 0 5 24 0 4 68 0 6 392 0 4 1525 0 1 122 0 4 44 2 0 1311 5 6 470 chain 19356 chr15 102531392 + 93941897 93942136 AluSp 311 + 40 277 129056 92 1 0 17 2 1 127 chain 178155 chr15 102531392 + 93944242 93946347 L1PA6 6164 - 2 2116 21149 197 3 4 480 8 2 157 0 4 291 0 5 412 0 1 240 0 4 317 chain 20876 chr15 102531392 + 93946413 93946684 THE1A 353 + 83 353 124376 22 7 6 242 chain 128059 chr15 102531392 + 93946684 93948274 THE1A-int 1579 + 0 1579 28554 117 0 1 515 1 9 140 0 2 329 42 10 49 0 1 69 0 10 194 1 0 133 chain 27681 chr15 102531392 + 93948274 93948628 THE1A 353 + 0 353 94111 111 1 0 242 chain 5373 chr15 102531392 + 93963509 93963569 5S 121 - 29 89 191270 60 chain 7203 chr15 102531392 + 93969452 93969541 MER4B 649 - 115 206 176049 9 0 2 80 chain 107940 chr15 102531392 + 93974531 93975725 L1PA2 6032 - 1 1195 34737 897 6 6 291 chain 13128 chr15 102531392 + 93993417 93993712 MER2 342 - 13 328 147729 31 2 3 65 5 6 79 96 114 17 chain 31814 chr15 102531392 + 94011149 94011574 LTR7B 505 - 8 505 81138 43 14 13 76 1 0 85 0 57 26 4 11 68 0 10 108 chain 41627 chr15 102531392 + 94013121 94013759 LTR9B 643 + 0 643 67121 107 12 13 80 8 7 126 3 0 86 33 34 53 0 3 64 21 25 45 chain 28142 chr15 102531392 + 94032699 94033054 THE1A 353 - 0 353 92492 151 1 0 92 1 0 110 chain 26112 chr15 102531392 + 94035508 94035812 AluSp 311 - 5 311 99566 29 0 2 275 chain 24898 chr15 102531392 + 94047546 94047844 AluSp 311 - 6 302 105353 173 2 0 123 chain 137407 chr15 102531392 + 94051193 94052837 L1PA7 6471 - 44 1693 26574 295 0 1 140 0 1 241 1 0 128 1 0 77 2 1 52 1 0 66 3 10 637 chain 14273 chr15 102531392 + 94064766 94064948 Tigger3a 397 + 143 332 143642 65 0 7 117 chain 38670 chr15 102531392 + 94094961 94095414 L1PA7 6471 + 6013 6470 71194 123 0 1 205 0 3 125 chain 13807 chr15 102531392 + 94097791 94098201 LTR12 884 + 74 870 145236 41 1 0 66 1 0 27 3 45 21 178 391 29 1 134 42 chain 19140 chr15 102531392 + 94100390 94100628 L1PB4 2604 - 230 468 129708 238 chain 17136 chr15 102531392 + 94103806 94104109 THE1B 368 + 0 307 135216 158 35 36 6 0 5 4 1 0 4 0 1 10 28 26 57 chain 17229 chr15 102531392 + 94111230 94111586 THE1D 372 + 0 372 134982 62 8 18 15 34 38 33 20 22 4 0 1 50 4 5 10 1 0 72 18 17 25 chain 7326 chr15 102531392 + 94126226 94126316 MADE1 96 + 0 96 175256 47 0 6 43 chain 134494 chr15 102531392 + 94137781 94139373 L1PA5 6144 - 15 4484 27112 477 0 1 922 3 2879 190 chain 19850 chr15 102531392 + 94168906 94169174 AluSg7 307 + 38 307 127655 93 18 19 157 chain 23719 chr15 102531392 + 94169265 94169523 L1PA2 6032 + 5770 6028 111943 258 chain 364868 chr15 102531392 + 94170348 94174360 L1PA3long 6157 - 5 4018 11233 3736 0 1 276 chain 22326 chr15 102531392 + 94191613 94191882 AluSc 308 + 17 285 118796 240 1 0 28 chain 19823 chr15 102531392 + 94204397 94204632 AluY 311 + 27 292 127739 81 1 31 153 chain 559755 chr15 102531392 + 94218628 94224657 L1PA2 6032 + 0 6029 369 6029 chain 5748 chr15 102531392 + 94238098 94238183 L1PB1 5432 - 2 82 187651 11 2 0 15 1 0 13 1 0 21 1 0 20 chain 257035 chr15 102531392 + 94271399 94274572 L1PA6 6164 - 2 6164 15877 137 1 16 538 11 275 387 2 0 6 1 2 122 1 0 376 0 2 203 0 1 191 0 2 181 32 20 179 0 1 230 18 2736 557 chain 91929 chr15 102531392 + 94277822 94278894 MER11C 1089 + 0 1073 38988 600 0 1 325 2 1 5 0 1 140 chain 25429 chr15 102531392 + 94282803 94283153 THE1A 353 - 0 353 102549 57 10 9 146 0 4 26 2 1 18 0 1 91 chain 109545 chr15 102531392 + 94297091 94298323 L1PA4 6152 - 1683 2917 34276 218 1 0 46 1 3 519 0 1 447 chain 146381 chr15 102531392 + 94298323 94300015 L1PA4 6152 + 4440 6143 25105 615 0 1 250 0 4 34 0 5 177 0 2 467 10 9 139 chain 7738 chr15 102531392 + 94319351 94319438 L1PA4 6152 + 5356 5443 172672 87 chain 61067 chr15 102531392 + 94319438 94320127 L1PA4 6152 + 5454 6143 52301 689 chain 540944 chr15 102531392 + 94335448 94341591 L1PA4 6152 + 0 6134 2672 422 11 0 517 0 1 1026 1 2 95 3 0 3241 0 4 576 2 1 249 chain 24110 chr15 102531392 + 94347319 94347613 AluSc 308 + 4 301 109692 5 0 1 64 0 2 96 0 1 6 1 0 122 chain 38593 chr15 102531392 + 94394568 94395288 L1PB1 5432 - 5 699 71299 5 2 0 18 1 0 13 1 0 21 1 0 21 26 31 10 24 11 4 0 1 12 4 3 17 30 30 9 2 1 53 2 0 8 5 1 11 1 0 13 1 0 20 25 15 135 0 5 146 1 2 78 chain 18586 chr15 102531392 + 94400598 94400817 AluSc5 308 + 38 257 131269 219 chain 22721 chr15 102531392 + 94423987 94424331 THE1B 368 - 0 368 116978 125 35 45 30 1 0 113 1 16 39 chain 16666 chr15 102531392 + 94431171 94431395 L1PA8 5853 + 5615 5853 136491 61 3 19 45 2 1 19 1 0 93 chain 35412 chr15 102531392 + 94464475 94464946 LTR2 463 - 0 463 75668 11 16 6 71 12 13 204 4 5 153 chain 24951 chr15 102531392 + 94524658 94524959 AluSp 311 - 0 301 105051 301 chain 3734 chr15 102531392 + 94530159 94530204 MER58A 224 - 130 175 211411 45 chain 37985 chr15 102531392 + 94549157 94549670 LTR12F 595 + 0 594 72155 100 0 12 34 5 69 186 9 13 76 1 2 102 chain 23761 chr15 102531392 + 94562807 94563091 AluY 311 + 0 281 111697 126 5 0 140 1 3 12 chain 25756 chr15 102531392 + 94581503 94581858 THE1A 353 - 0 353 101057 95 26 25 123 2 1 109 chain 30885 chr15 102531392 + 94583768 94584310 L1PA15 4387 + 3840 4365 82710 6 0 2 42 2 0 42 1 0 113 11 13 46 1 0 21 2 0 5 1 0 54 2 1 18 6 0 7 0 2 5 2 1 37 25 22 35 2 0 16 2 0 28 1 0 9 chain 19351 chr15 102531392 + 94606395 94606642 AluSc 308 + 10 258 129066 138 9 10 100 chain 5636 chr15 102531392 + 94624332 94624411 MADE1 96 - 1 96 188696 31 4 20 44 chain 30436 chr15 102531392 + 94644840 94645158 AluYb8 318 + 0 318 83555 318 chain 31201 chr15 102531392 + 94661268 94661620 L1PA3long 6157 + 5804 6157 82159 223 0 1 129 chain 408333 chr15 102531392 + 94691200 94695828 L1PA4 6152 - 9 4615 9848 330 0 1 2087 0 1 208 2 0 233 28 5 570 1 6 7 5 0 382 2 0 411 0 3 362 chain 22398 chr15 102531392 + 94696844 94697229 THE1B 368 - 0 368 118492 117 71 71 11 22 1 25 0 4 139 chain 51918 chr15 102531392 + 94700468 94701233 LTR17 781 + 0 763 57673 57 1 0 104 1 0 18 1 0 27 0 1 26 1 0 15 8 7 58 26 0 7 11 10 251 3 0 114 2 46 13 12 0 9 chain 13069 chr15 102531392 + 94730629 94730839 L1PA8 5853 + 5647 5853 147951 32 1 0 9 7 0 6 11 17 29 2 1 19 1 0 93 chain 30296 chr15 102531392 + 94744708 94745026 AluYb8 318 - 0 318 83939 318 chain 34745 chr15 102531392 + 94746503 94746944 LTR71A 459 + 0 459 76550 194 11 12 172 3 20 61 chain 299308 chr15 102531392 + 94751515 94754876 L1PA4 6152 - 0 3371 13465 6 0 2 65 0 1 186 1 0 1537 0 4 937 0 2 241 1 2 29 0 1 358 chain 27830 chr15 102531392 + 94756099 94756405 L1PA4 6152 + 5694 6000 93585 306 chain 12372 chr15 102531392 + 94756412 94756559 L1PA4 6152 + 6000 6152 150744 141 0 5 6 chain 159909 chr15 102531392 + 94760952 94762971 L1PA8 5853 + 3783 5797 23350 256 4 3 308 12 6 207 5 9 367 3 0 45 4 13 12 2 0 75 1 4 305 16 13 156 1 0 48 2 0 69 1 0 65 1 0 16 2 1 36 chain 59293 chr15 102531392 + 94780654 94781425 MER4E1 777 + 2 769 53230 15 7 0 176 2 1 84 0 3 46 0 4 20 0 1 58 1 2 134 1 0 6 4 0 217 chain 24241 chr15 102531392 + 94794587 94794877 AluSp 311 - 12 301 108987 167 1 0 122 chain 30199 chr15 102531392 + 94846384 94846795 MLT2A1 477 - 17 477 84196 20 3 41 15 0 4 67 0 6 100 1 4 23 0 1 10 5 2 167 chain 9146 chr15 102531392 + 94846805 94846954 THE1B 368 - 199 355 164828 57 28 30 40 0 5 24 chain 8163 chr15 102531392 + 94862711 94862812 MER5A 189 - 84 185 170159 101 chain 19111 chr15 102531392 + 94892808 94893027 AluY 311 + 41 261 129787 91 0 1 128 chain 16254 chr15 102531392 + 94897512 94897872 THE1D 372 + 0 357 137601 51 9 0 17 25 26 36 7 4 32 32 34 25 1 0 19 9 11 26 8 10 36 2 5 25 chain 14947 chr15 102531392 + 94926732 94927014 THE1B 368 - 62 354 141478 52 76 85 52 5 6 97 chain 32434 chr15 102531392 + 94952238 94952739 MLT2A1 477 + 0 476 80145 91 0 6 71 5 2 9 0 1 23 1 2 178 0 2 8 58 32 12 1 0 3 5 0 36 chain 28366 chr15 102531392 + 94978858 94979159 AluYa5 310 - 9 310 91709 301 chain 10838 chr15 102531392 + 95031691 95031827 L1PA4 6152 + 6011 6152 156834 118 0 2 5 0 3 13 chain 14016 chr15 102531392 + 95034409 95034654 L1MA4A 3247 + 2970 3204 144527 137 1 0 10 2 1 10 26 20 29 5 2 25 chain 98098 chr15 102531392 + 95035574 95036882 HERVL-int 5654 + 4347 5654 37256 77 0 1 58 0 3 136 16 4 112 1 2 17 0 1 143 0 3 45 7 8 108 5 7 281 6 0 71 0 5 225 chain 13179 chr15 102531392 + 95036882 95037035 MLT2A2 560 + 0 159 147552 12 0 6 141 chain 13040 chr15 102531392 + 95045133 95045313 THE1B 368 + 0 180 148081 107 12 13 49 1 0 11 chain 17291 chr15 102531392 + 95045316 95045523 L1PA5 6144 + 5939 6142 134802 196 4 0 7 chain 28667 chr15 102531392 + 95055314 95055618 AluYa5 310 - 6 310 90463 304 chain 63487 chr15 102531392 + 95193982 95194729 LTR17 781 + 0 781 51251 310 10 0 17 1 0 379 0 44 23 0 1 7 chain 22713 chr15 102531392 + 95239520 95239801 AluSp 311 + 10 293 117017 20 2 1 246 0 3 13 chain 3563 chr15 102531392 + 95285594 95285650 LTR12F 595 - 312 356 214270 16 12 0 28 chain 29692 chr15 102531392 + 95293977 95294374 LTR7 482 + 0 467 85860 69 8 46 109 9 41 202 chain 310548 chr15 102531392 + 95294407 95301948 HERVH-int 3825 + 16 3825 12985 516 5 0 35 4 3 10 1 0 20 0 31 25 22 0 42 2 1 15 21 0 65 1 0 450 15 0 200 9 0 29 0 2 10 1 0 23 0 1 285 0 1 247 3694 0 1048 6 9 324 37 38 379 chain 124841 chr15 102531392 + 95296531 95298037 HERVH-int 3825 + 2103 3825 29442 783 0 1 183 12 14 36 0 210 194 2 0 68 3 8 225 chain 36229 chr15 102531392 + 95299694 95300131 HERVH-int 3825 + 1557 2000 74589 264 5 6 28 3 8 137 chain 23756 chr15 102531392 + 95303193 95303592 LTR7 482 + 0 469 111734 50 26 65 34 14 15 60 9 41 20 11 7 127 12 14 36 chain 6356 chr15 102531392 + 95374563 95374636 MSTB 430 + 321 394 182333 73 chain 3494 chr15 102531392 + 95380694 95380738 LTR12 884 - 766 810 215441 44 chain 17213 chr15 102531392 + 95390702 95390933 THE1B 368 - 105 350 135006 95 1 0 104 5 20 26 chain 79171 chr15 102531392 + 95403711 95404609 L1PA5 6144 - 1 899 43966 10 2 1 844 0 1 42 chain 9372 chr15 102531392 + 95414465 95414608 L1PA8 5853 - 0 141 163700 85 9 8 19 2 1 28 chain 31830 chr15 102531392 + 95419596 95420033 MLT2A1 477 + 0 477 81122 142 0 1 21 9 13 197 19 55 29 1 0 19 chain 22434 chr15 102531392 + 95443765 95444185 MSTA 426 + 0 426 118325 35 7 9 59 0 1 24 25 28 39 43 45 77 3 2 18 6 5 84 chain 25635 chr15 102531392 + 95526890 95527349 L1PA11 4918 + 4133 4578 101564 92 4 5 101 7 13 49 20 17 65 2 0 11 1 0 22 3 0 9 33 24 13 1 0 13 2 0 11 chain 64212 chr15 102531392 + 95549407 95550146 L1PA5 6144 - 0 740 50907 338 0 1 401 chain 3846 chr15 102531392 + 95552301 95552346 MADE1 96 + 1 46 209690 45 chain 23275 chr15 102531392 + 95581655 95581927 AluSq10 312 + 16 288 114321 272 chain 46931 chr15 102531392 + 95589966 95590599 LTR12 884 - 15 884 61282 43 10 14 84 0 103 250 2 0 100 1 132 143 chain 54230 chr15 102531392 + 95600050 95600770 L1PB1 5432 - 1450 2174 56205 124 1 2 124 3 5 213 12 13 243 chain 23604 chr15 102531392 + 95610445 95610802 THE1B 368 - 0 368 112559 55 8 7 53 21 29 10 0 1 4 4 8 27 1 0 174 chain 73353 chr15 102531392 + 95645188 95646049 L1PA7 6471 + 5609 6470 46858 5 1 0 518 1 2 336 chain 23511 chr15 102531392 + 95696404 95696717 THE1B 368 + 0 328 113067 44 0 15 5 0 2 102 17 16 87 1 0 57 chain 125678 chr15 102531392 + 95697616 95699068 L1PA5 6144 - 0 1427 29196 787 29 3 47 0 1 589 chain 4953 chr15 102531392 + 95709551 95709627 MLT1A0 366 - 238 366 195674 43 7 59 26 chain 8410 chr15 102531392 + 95726420 95726524 THE1B 368 + 265 368 168791 76 1 0 27 chain 198267 chr15 102531392 + 95745717 95748384 HERVL-int 5654 + 2979 5654 19336 276 0 1 296 1 20 8 19 0 151 14 11 525 0 1 8 1 0 75 5 6 548 0 1 278 20 21 19 8 9 113 9 7 21 1 4 50 5 1 72 29 35 49 0 2 60 0 1 6 chain 27531 chr15 102531392 + 95749457 95749789 THE1B-int 1605 + 58 392 94574 224 0 2 108 chain 24867 chr15 102531392 + 95751293 95751641 THE1B 368 + 0 356 105533 19 1 0 8 3 0 17 5 20 105 1 0 23 2 0 164 chain 76377 chr15 102531392 + 95761455 95762395 L1PA7 6471 + 5527 6467 45276 94 1 0 61 0 1 452 11 13 167 0 1 131 10 7 13 chain 14940 chr15 102531392 + 95778485 95778693 MSTA-int 1630 - 1419 1630 141508 91 0 4 96 9 8 12 chain 3405 chr15 102531392 + 95790887 95791092 LTR12 884 - 495 775 216992 13 2 0 19 140 218 24 1 0 6 chain 3354 chr15 102531392 + 95841116 95841223 MER20 218 + 137 218 217992 14 55 29 38 chain 22754 chr15 102531392 + 95843712 95844001 AluY 311 + 17 303 116807 92 1 0 24 8 6 164 chain 18158 chr15 102531392 + 95854568 95854949 MSTA 426 + 16 414 132440 10 0 1 70 18 36 52 62 59 19 15 15 71 18 19 46 chain 16727 chr15 102531392 + 95874793 95874979 L1PA3long 6157 + 5966 6152 136325 186 chain 73944 chr15 102531392 + 95877639 95878469 L1PA4 6152 - 1 828 46544 5 3 0 822 chain 20068 chr15 102531392 + 95933579 95933815 L1PA7 6471 + 6227 6460 126926 91 3 0 142 chain 24626 chr15 102531392 + 95965517 95965870 THE1B 368 - 0 366 106853 75 1 0 112 10 9 104 9 24 42 chain 3289 chr15 102531392 + 95966730 95966766 MLT2A2 560 - 7 43 219206 36 chain 24622 chr15 102531392 + 96068317 96068672 THE1B 368 - 0 368 106871 168 4 0 32 1 0 36 1 3 16 5 6 42 6 21 44 chain 42591 chr15 102531392 + 96083327 96083874 MLT2A2 560 - 0 560 65912 147 0 11 90 0 1 223 0 1 87 chain 12143 chr15 102531392 + 96118532 96118693 Tigger3c 601 - 79 258 151640 67 0 14 54 0 4 40 chain 33500 chr15 102531392 + 96180631 96181013 L1PA5 6144 + 5764 6144 78409 371 2 0 9 chain 20853 chr15 102531392 + 96205200 96205489 AluY 311 + 7 297 124448 125 29 30 135 chain 60504 chr15 102531392 + 96218536 96219501 L1PB1 5432 - 19 960 52575 9 1 0 11 7 6 10 0 1 6 1 0 24 63 53 12 1 0 19 3 4 21 2 1 15 2 1 25 1 0 28 2 0 9 26 20 24 8 8 342 0 2 5 2 0 52 0 2 82 3 0 149 chain 5686 chr15 102531392 + 96219504 96219568 L1PB1 5432 + 4407 4471 188237 64 chain 23388 chr15 102531392 + 96220212 96220496 AluSg7 307 - 18 306 113715 12 0 3 146 2 3 124 chain 12877 chr15 102531392 + 96289036 96289206 U2 167 + 0 164 148717 130 2 0 9 2 0 3 2 0 22 chain 12783 chr15 102531392 + 96301170 96301432 L1PA8 5853 + 5587 5853 149121 19 26 24 44 29 27 39 2 1 19 10 19 74 chain 119619 chr15 102531392 + 96317823 96319530 L1PA5 6144 + 4731 6129 31173 215 0 2 22 0 1 321 2 3 6 0 1 67 316 0 526 5 7 227 chain 19579 chr15 102531392 + 96357104 96357376 L1PA8 5853 - 0 266 128435 93 1 0 19 2 1 38 0 2 12 3 0 9 1 0 71 2 0 21 chain 10245 chr15 102531392 + 96377881 96378011 UCON11 162 + 11 137 159399 98 3 0 13 1 0 15 chain 31469 chr15 102531392 + 96384969 96385335 L1PA2 6032 - 2 368 81690 141 7 0 7 1 8 210 chain 4582 chr15 102531392 + 96459060 96459117 MIR 256 + 89 146 199836 57 chain 3067 chr15 102531392 + 96480898 96480933 MER20 218 - 1 36 223606 35 chain 18603 chr15 102531392 + 96537225 96537527 THE1B 368 - 62 368 131217 63 2 1 12 18 21 8 0 3 6 2 3 20 1 0 55 11 10 104 chain 21308 chr15 102531392 + 96603817 96604168 THE1A 353 + 2 353 122835 11 2 0 34 0 1 31 72 73 201 chain 49892 chr15 102531392 + 96678563 96679397 LTR12 884 - 10 884 59093 73 1 0 27 0 4 130 100 0 126 21 30 17 34 33 58 2 0 125 2 133 118 chain 6825 chr15 102531392 + 96678797 96678881 LTR12 884 - 250 334 178753 84 chain 173498 chr15 102531392 + 96747827 96749799 L1PA5 6144 + 4152 6130 21652 185 0 4 119 4 0 228 0 1 90 1 0 310 0 8 892 1 0 43 1 0 98 chain 24691 chr15 102531392 + 96759739 96760012 L1PA4 6152 - 175 448 106493 273 chain 112078 chr15 102531392 + 96922753 96924177 L1PA8 5853 - 0 1472 33641 84 17 33 28 1 31 49 0 4 16 2 0 44 1 0 555 2 0 3 1 0 484 0 1 74 0 3 63 chain 24897 chr15 102531392 + 96980311 96980728 L1PB2 3958 - 205 628 105366 74 6 5 25 1 0 31 1 0 70 3 4 8 1 0 43 0 1 5 1 8 23 2 0 17 2 0 38 0 7 21 5 0 12 9 12 19 chain 11462 chr15 102531392 + 97018304 97018437 L1PA5 6144 + 6007 6140 154462 133 chain 115780 chr15 102531392 + 97034196 97035632 LTR12C 1709 - 0 1709 32534 294 7 6 181 0 4 106 2 0 7 1 0 84 0 278 170 7 6 98 20 19 80 9 6 370 chain 23477 chr15 102531392 + 97046509 97046877 THE1D 372 - 0 363 113228 17 1 0 15 1 0 124 51 47 6 0 1 153 chain 58733 chr15 102531392 + 97059918 97060587 L1PA5 6144 - 0 670 53566 64 0 1 605 chain 56939 chr15 102531392 + 97100107 97100761 L1PA4 6152 - 9 664 54569 104 0 1 550 chain 47172 chr15 102531392 + 97176497 97177010 L1PA2 6032 + 5513 6032 61068 493 0 6 20 chain 5717 chr15 102531392 + 97198748 97198831 MER30 238 - 13 93 187957 35 10 7 38 chain 25861 chr15 102531392 + 97199517 97199818 L1PA7 6471 - 2 302 100603 140 1 0 160 chain 38687 chr15 102531392 + 97202439 97202869 L1PA2 6032 + 5601 6031 71165 430 chain 9543 chr15 102531392 + 97206866 97207005 MSTD 398 + 0 138 162867 77 16 15 46 chain 318018 chr15 102531392 + 97207540 97211118 L1PA4 6152 + 2550 6141 12672 578 2 4 866 0 3 157 0 4 503 1 0 632 0 5 839 chain 8460 chr15 102531392 + 97217112 97217215 L1PA8 5853 - 188 289 168514 57 2 0 44 chain 13435 chr15 102531392 + 97220248 97220547 THE1B 368 - 61 368 146556 67 2 1 9 1 0 13 0 7 6 6 6 29 1 0 34 84 88 47 chain 60019 chr15 102531392 + 97296973 97297622 L1PA3long 6157 - 579 1228 52814 649 chain 52350 chr15 102531392 + 97297623 97298204 L1PA3long 6157 + 5574 6157 57398 72 0 1 367 0 1 142 chain 57041 chr15 102531392 + 97313444 97314184 MER4E 760 + 8 744 54507 9 2 0 27 1 0 37 0 1 62 4 14 12 7 0 64 1 0 109 2 1 22 2 0 244 1 0 134 chain 49299 chr15 102531392 + 97389030 97389888 L1PB1 5432 - 5 853 59518 5 2 0 18 6 5 8 1 0 21 1 0 26 2 0 12 58 39 12 1 0 35 0 13 12 2 1 51 2 0 10 2 0 3 2 0 12 1 0 10 34 31 106 4 5 32 1 2 140 3 0 12 1 10 153 0 6 37 0 1 20 chain 42770 chr15 102531392 + 97415066 97415544 LTR7 482 - 0 482 65688 98 0 2 342 0 2 38 chain 292269 chr15 102531392 + 97416742 97420444 HERVH-int 3825 - 0 3825 13878 490 5 215 1298 12 4 102 8 35 320 0 1 331 0 3 109 0 1 135 0 3 12 0 2 7 0 1 30 1 0 6 9 10 11 2 1 42 1 0 4 91 7 14 3 0 9 4 3 15 28 0 24 1 0 10 65 0 30 0 56 261 0 11 212 chain 40845 chr15 102531392 + 97420446 97420897 LTR7 482 - 0 482 68103 191 0 31 260 chain 26320 chr15 102531392 + 97426923 97427240 L1PA4 6152 - 9 357 98736 11 0 1 173 0 30 133 chain 41097 chr15 102531392 + 97427246 97427709 L1P1 4361 + 3570 4040 67768 302 0 7 161 chain 91423 chr15 102531392 + 97440843 97441841 L1PA2 6032 - 266 1266 39158 76 1 0 272 0 3 649 chain 23382 chr15 102531392 + 97441841 97442098 L1PA2 6032 + 5772 6030 113749 102 0 1 155 chain 14176 chr15 102531392 + 97452427 97452591 L1PA5 6144 + 5978 6140 143967 67 0 1 84 3 0 10 chain 112911 chr15 102531392 + 97478087 97479395 L1PA5 6144 - 0 1303 33400 259 1 0 598 1 0 396 3 0 50 chain 9989 chr15 102531392 + 97507538 97507682 AluYf5 307 + 167 301 160635 93 6 4 25 3 0 5 5 0 7 chain 13311 chr15 102531392 + 97509548 97509731 L1PA7 6471 + 6288 6470 147044 25 12 11 146 chain 43203 chr15 102531392 + 97527322 97527954 LTR12C 1709 - 1062 1709 65166 102 13 12 149 1 47 35 1 0 4 0 1 2 5 0 14 0 25 82 50 0 174 chain 6091 chr15 102531392 + 97529248 97529438 L1MC1 2226 - 191 373 184483 42 2 0 15 3 0 5 68 71 14 7 1 34 chain 39226 chr15 102531392 + 97539073 97539493 L1PA4 6152 - 382 802 70415 420 chain 33510 chr15 102531392 + 97539493 97539868 L1PA4 6152 + 5764 6142 78393 57 0 3 318 chain 6216 chr15 102531392 + 97564996 97565141 MLT1B 390 + 186 331 183444 42 51 52 20 1 0 31 chain 2195 chr15 102531392 + 97571849 97572068 LTR12 884 - 686 777 236602 17 1 18 17 81 15 13 79 0 11 chain 41883 chr15 102531392 + 97580148 97580698 MLT2A2 560 + 0 560 66784 193 0 1 20 0 1 141 18 25 123 0 1 55 chain 43206 chr15 102531392 + 97596499 97597057 MLT2A2 560 - 0 560 65164 107 4 3 49 1 2 116 3 5 278 chain 43821 chr15 102531392 + 97638626 97639174 MLT2A2 560 + 0 560 64428 403 1 12 74 0 1 70 chain 65813 chr15 102531392 + 97640995 97642131 L1PB1 5432 + 4423 5423 50186 122 0 1 4 1 0 49 5 0 22 0 1 69 1 0 121 0 1 290 117 11 15 37 30 9 2 0 12 0 5 34 1 0 18 1 0 37 8 7 11 27 16 18 3 1 5 1 0 12 2 0 26 1 0 21 1 0 13 1 0 19 chain 30449 chr15 102531392 + 97648773 97649209 LTR3A 482 + 34 482 83532 84 3 0 5 25 28 44 0 14 163 1 0 34 1 0 76 chain 364860 chr15 102531392 + 97650932 97655662 L1PA8A 6298 + 1471 6290 11234 70 7 8 105 3 4 58 1 2 140 5 6 39 16 15 88 0 1 190 1 2 308 1 2 186 0 2 5 0 2 51 0 4 352 4 32 248 3 1 78 0 1 4 0 5 113 0 1 4 1 0 115 5 7 156 1 2 258 6 0 105 1 0 4 0 1 148 0 1 97 1 5 195 13 13 510 6 34 240 3 2 77 0 2 137 10 13 288 0 1 61 0 8 212 chain 27039 chr15 102531392 + 97676639 97677017 THE1C 375 + 0 375 96149 125 3 0 50 1 2 14 1 0 16 5 6 135 2 1 26 chain 16332 chr15 102531392 + 97714442 97714682 L1PA8 5853 + 5593 5853 137396 15 2 0 70 5 4 11 1 0 40 9 8 19 1 0 40 0 26 27 chain 34730 chr15 102531392 + 97716262 97716862 LTR12 884 + 0 783 76572 74 1 0 19 34 0 22 1 0 69 1 0 15 24 0 9 0 1 19 10 128 18 5 3 57 9 0 181 11 147 21 chain 77113 chr15 102531392 + 97764463 97765351 L1PA5 6144 + 5252 6140 44910 408 1 2 274 0 1 198 2 0 5 chain 10786 chr15 102531392 + 97768160 97768321 LTR12E 1234 + 1080 1234 157051 29 20 13 112 chain 7782 chr15 102531392 + 97794105 97794539 HUERS-P1-int 2401 - 262 578 172409 15 2 0 47 34 26 10 1 0 9 92 58 35 1 0 10 8 0 9 25 5 13 102 59 7 1 0 13 chain 551614 chr15 102531392 + 97808810 97814834 L1PA2 6032 - 4 6032 1236 848 1 2 2096 0 1 570 1 2 830 0 1 941 0 1 425 1 0 311 chain 177558 chr15 102531392 + 97821954 97824083 L1PA7 6471 - 5 2123 21202 7 8 0 7 1 0 130 3 0 37 1 0 500 0 1 161 1 0 13 0 1 38 1 0 4 0 1 987 0 1 230 chain 552142 chr15 102531392 + 97833400 97839543 L1PA3long 6157 - 0 6151 1173 57 0 1 791 0 4 124 0 1 239 1 2 291 0 5 1373 0 5 392 16 0 317 0 2 1590 0 4 656 0 1 296 chain 68296 chr15 102531392 + 97845703 97846521 L1PA7 6471 - 3 895 49123 37 0 82 30 1 0 5 0 1 174 0 2 258 0 1 79 3 0 95 5 0 83 3 0 45 chain 5843 chr15 102531392 + 97859635 97859730 MSTB1 431 - 120 217 186745 39 17 19 39 chain 23131 chr15 102531392 + 97879695 97879961 AluSp 311 - 34 300 114992 266 chain 133790 chr15 102531392 + 97905921 97907404 L1PA3long 6157 - 0 1486 27262 41 0 1 735 1 3 706 chain 121016 chr15 102531392 + 97907404 97908747 L1PA3long 6157 + 3316 4660 30666 203 1 2 1139 chain 470399 chr15 102531392 + 97915717 97920887 L1PA3long 6157 - 0 5172 8020 317 1 0 1895 0 3 2957 chain 122881 chr15 102531392 + 97937447 97938817 L1PA3long 6157 - 8 1377 30085 1284 1 0 85 chain 3110 chr15 102531392 + 97942979 97943016 MER5A1 166 + 48 85 222753 37 chain 29006 chr15 102531392 + 97953315 97953622 AluYa5 310 - 3 310 88959 307 chain 538023 chr15 102531392 + 97956555 97962703 L1PA4 6152 - 0 6149 3146 42 0 9 98 1 0 695 0 4 328 0 7 617 0 4 365 1 0 418 1 0 403 0 2 23 0 5 154 11 1 1770 6 9 5 3 0 221 0 1 137 17 0 258 1 0 573 chain 7487 chr15 102531392 + 97967796 97967884 L1PA8A 6298 + 6203 6291 174227 88 chain 549378 chr15 102531392 + 97975929 97982073 L1PA3long 6157 + 6 6151 1531 1063 3 0 169 2 0 90 1 0 881 2 0 72 0 2 43 1 0 46 1 2 229 0 1 3150 0 3 383 0 3 8 chain 38678 chr15 102531392 + 97998104 97998615 L1PA8 5853 + 5348 5853 71180 216 1 0 46 2 0 27 1 2 40 1 0 14 1 0 47 2 1 19 4 3 90 chain 15878 chr15 102531392 + 98008948 98009135 AluSp 311 - 115 303 138712 103 0 1 84 chain 25749 chr15 102531392 + 98022698 98023235 L1PA15 4387 + 3827 4356 101091 45 24 22 39 1 0 164 11 9 16 13 17 45 90 86 46 17 14 26 chain 15054 chr15 102531392 + 98034483 98034698 L1PA8 5853 + 5644 5853 141159 38 1 0 9 2 1 48 2 1 19 2 0 16 2 1 76 chain 10856 chr15 102531392 + 98045849 98045981 L1PA3long 6157 + 5896 6026 156762 35 3 1 94 chain 10489 chr15 102531392 + 98045981 98046096 L1PA3long 6157 + 6042 6157 158294 115 chain 13027 chr15 102531392 + 98048439 98048579 L1PA5 6144 - 12 152 148146 140 chain 39225 chr15 102531392 + 98051235 98051682 L1PA4 6152 + 5703 6150 70418 447 chain 99169 chr15 102531392 + 98055832 98057121 L1PA8 5853 + 4555 5853 36980 451 1 9 11 9 12 304 1 2 177 0 3 40 1 0 46 2 0 60 21 19 71 1 0 93 chain 26835 chr15 102531392 + 98078625 98078927 AluYa5 310 - 18 310 96854 9 10 0 283 chain 94074 chr15 102531392 + 98086565 98087797 L1PA10 4194 - 2006 3252 38328 79 0 1 92 0 4 125 6 12 41 19 21 342 3 2 12 1 2 4 1 0 192 0 1 186 0 1 129 chain 85289 chr15 102531392 + 98113102 98114145 L1PA6 6164 - 11 1074 41424 49 0 2 91 18 19 84 1 0 368 10 22 238 0 1 64 0 4 16 0 1 104 chain 137628 chr15 102531392 + 98120764 98122547 L1PA8A 6298 - 8 1790 26541 105 3 0 5 22 24 460 0 3 179 0 1 20 1 4 356 0 1 308 5 0 227 3 0 89 chain 128885 chr15 102531392 + 98124184 98125904 L1PA10 4194 - 426 2159 28339 63 0 1 49 0 1 131 8 14 370 7 8 278 0 1 44 0 3 71 1 0 31 0 4 42 3 0 6 0 2 37 14 13 302 10 9 253 chain 18355 chr15 102531392 + 98136399 98136652 L1PA8 5853 + 5609 5853 131921 70 7 0 9 2 1 5 0 1 45 2 1 19 1 0 93 chain 90105 chr15 102531392 + 98172331 98173361 LTR5A 1029 - 0 1029 39611 877 2 1 151 chain 155616 chr15 102531392 + 98186216 98188033 L1PA6 6164 + 4335 6153 23906 27 0 4 1032 2 0 602 6 5 148 chain 56268 chr15 102531392 + 98206304 98207079 LTR12 884 + 4 868 54985 21 1 0 30 0 41 47 1 0 134 2 43 20 1 2 35 2 0 67 27 37 83 1 0 61 0 1 242 chain 20862 chr15 102531392 + 98215293 98215800 L1M1 2793 - 1667 2132 124419 115 9 8 4 1 0 76 0 1 20 1 0 9 2 0 43 186 148 41 chain 5815 chr15 102531392 + 98227156 98227367 MER51A 677 - 441 677 186999 16 61 82 19 56 60 59 chain 2624 chr15 102531392 + 98253023 98253127 MIR 256 - 86 190 231364 29 61 61 14 chain 8297 chr15 102531392 + 98282044 98282205 L1PA15 4387 - 21 180 169422 10 1 0 27 5 0 14 1 9 36 23 20 33 1 0 10 chain 41163 chr15 102531392 + 98286113 98286622 LTR12C 1709 + 1205 1708 67695 19 11 4 52 1 3 336 7 6 83 chain 23427 chr15 102531392 + 98320449 98320728 AluY 311 + 26 305 113489 279 chain 97592 chr15 102531392 + 98321098 98322604 L1PA15 4387 + 2858 4355 37397 31 5 6 257 11 9 35 0 1 121 0 8 382 8 6 99 2 0 13 4 1 63 2 0 10 0 7 16 10 9 168 10 9 22 13 12 63 16 12 33 85 77 27 chain 7410 chr15 102531392 + 98362548 98362750 Tigger3a 397 + 56 324 174716 15 19 68 21 13 24 28 6 12 15 28 0 8 0 28 49 chain 21150 chr15 102531392 + 98374055 98374352 THE1B 368 - 62 368 123371 76 1 0 9 4 8 10 0 1 10 6 12 11 1 0 169 chain 6771 chr15 102531392 + 98380314 98380599 L1ME1 1623 - 343 595 179169 28 165 139 24 5 0 5 0 1 47 3 0 8 chain 30154 chr15 102531392 + 98414890 98415205 AluYb8 318 - 3 318 84322 315 chain 14566 chr15 102531392 + 98419197 98419919 LTR12D 1347 + 590 1049 142691 72 0 1 30 131 12 8 24 0 38 320 200 49 28 27 22 chain 28206 chr15 102531392 + 98425506 98425878 THE1B 368 + 0 368 92285 172 7 6 115 3 0 75 chain 3115 chr15 102531392 + 98466529 98466582 MER58A 224 + 93 147 222662 28 9 10 16 chain 16882 chr15 102531392 + 98489908 98490095 L1PA2 6032 + 5834 6021 135886 187 chain 5631 chr15 102531392 + 98499172 98499247 L1MD3 1191 - 132 205 188754 60 2 0 13 chain 26348 chr15 102531392 + 98529205 98529542 THE1A 353 + 0 335 98621 12 0 1 97 1 0 92 1 0 32 3 2 99 chain 27689 chr15 102531392 + 98531120 98531471 THE1A 353 + 0 353 94084 81 2 4 26 1 0 85 0 2 22 1 0 133 chain 21452 chr15 102531392 + 98554922 98555176 AluYk4 311 + 35 288 122330 97 1 0 156 chain 46178 chr15 102531392 + 98590047 98590610 L1PA6 6164 - 7 576 61868 5 0 2 4 1 0 137 1 3 82 4 7 329 chain 32211 chr15 102531392 + 98591651 98592251 MLT2A2 560 + 0 560 80503 37 0 4 28 0 8 110 41 0 122 121 106 135 0 4 6 chain 5344 chr15 102531392 + 98604743 98604820 MSTA 426 - 0 75 191601 41 3 1 33 chain 530417 chr15 102531392 + 98634768 98640779 L1PA3long 6157 + 2 6152 4135 120 0 1 27 4 5 147 0 1 464 9 137 38 8 8 90 1 0 409 0 3 371 0 1 1131 0 2 302 0 4 468 0 1 231 0 2 512 8 1 1221 7 11 430 1 0 12 chain 28308 chr15 102531392 + 98647051 98647409 LTR12C 1709 - 494 940 91911 56 0 47 201 3 4 49 0 40 49 chain 17740 chr15 102531392 + 98651289 98651536 MSTA-int 1630 + 1383 1630 133593 78 1 0 43 5 0 12 1 7 107 chain 185116 chr15 102531392 + 98658918 98660969 L1PA4 6152 + 4101 6152 20490 2051 chain 17661 chr15 102531392 + 98663506 98663804 THE1B 368 + 0 306 133802 64 6 9 96 45 51 22 2 1 63 chain 33894 chr15 102531392 + 98683661 98684122 L1PA8 5853 - 6 459 77782 87 1 0 17 1 0 49 1 0 4 1 0 10 7 6 66 9 7 37 1 0 170 chain 13100 chr15 102531392 + 98695727 98695897 THE1B 368 + 199 368 147847 95 2 1 73 chain 12795 chr15 102531392 + 98697549 98697717 LTR26B 539 + 265 432 149078 69 8 7 91 chain 30558 chr15 102531392 + 98706099 98706417 AluYb8 318 - 0 318 83319 318 chain 29212 chr15 102531392 + 98733605 98733912 AluYb8 318 + 0 307 87994 307 chain 4136 chr15 102531392 + 98768977 98769023 MER96B 391 - 223 269 205421 46 chain 28749 chr15 102531392 + 98797262 98797583 L1PA5 6144 - 14 335 90126 321 chain 85351 chr15 102531392 + 98821454 98822438 L1PA4 6152 + 5144 6143 41397 107 0 12 176 5 7 555 1 2 140 chain 35492 chr15 102531392 + 98838679 98839071 L1PA2 6032 - 0 399 75564 141 0 7 251 chain 53248 chr15 102531392 + 98857121 98857768 L1PA8 5853 - 8 648 56859 85 1 0 16 1 0 40 11 10 14 1 0 72 2 0 44 1 0 359 chain 3832 chr15 102531392 + 98862588 98862649 MER57F 435 + 373 435 209895 27 1 2 23 1 0 5 0 1 4 chain 18132 chr15 102531392 + 98895746 98896045 THE1B 368 - 62 368 132514 5 0 1 60 1 0 8 1 0 14 43 49 55 5 6 55 0 1 52 chain 3156 chr15 102531392 + 98943532 98943565 MLT2B4 540 - 358 391 221827 33 chain 31551 chr15 102531392 + 98945600 98946046 MLT2A2 560 - 0 560 81565 32 12 16 34 0 111 158 17 15 46 0 1 147 chain 11544 chr15 102531392 + 98948101 98948309 L1PA8A 6298 + 5924 6107 154125 32 56 31 120 chain 29731 chr15 102531392 + 98989689 98990152 MER1A 529 + 64 529 85722 62 16 17 53 28 36 185 4 0 34 19 16 62 chain 304 chr15 102531392 + 99000251 99000284 MLT1B 390 + 301 334 187677 33 chain 35761 chr15 102531392 + 99000301 99000820 MER1A 529 - 9 528 75189 45 20 19 63 2 5 24 3 0 227 20 21 18 4 0 14 0 4 79 chain 489 chr15 102531392 + 99000821 99000874 MLT1B 390 + 334 387 187677 53 chain 5270 chr15 102531392 + 99000881 99000947 L1MC2 1988 + 1850 1916 192316 66 chain 396896 chr15 102531392 + 99001483 99006849 L1PB1 5432 + 77 5418 10204 77 2 3 135 0 11 241 1 0 29 0 11 10 24 15 139 0 1 58 7 15 352 0 3 103 10 5 118 8 0 222 5 16 46 7 9 15 10 11 6 1 0 443 10 8 197 0 2 17 3 0 51 2 1 40 28 19 334 1 2 166 0 1 21 0 1 114 0 1 298 7 2 286 0 6 253 6 7 155 0 1 58 1 2 408 1 2 178 5 13 136 11 5 29 0 1 7 12 4 106 3 0 11 3 0 20 47 36 47 5 4 11 5 4 45 1 0 16 3 0 5 59 44 24 1 0 21 1 0 13 1 0 14 chain 28666 chr15 102531392 + 99031659 99032060 MLT2A1 477 + 0 394 90466 142 0 1 20 7 11 181 12 8 22 8 0 9 chain 113178 chr15 102531392 + 99035629 99036863 SVA_D 2077 - 4 1853 33322 644 0 575 89 0 40 501 chain 29831 chr15 102531392 + 99051364 99051711 L1PA5 6144 - 2 345 85343 7 4 0 336 chain 30671 chr15 102531392 + 99052930 99053290 L1PA5 6144 + 5767 6132 83090 211 0 5 149 chain 3080 chr15 102531392 + 99054603 99054665 MER5A1 166 - 30 94 223341 23 16 18 23 chain 3634 chr15 102531392 + 99063213 99063257 MIR 256 - 147 191 213061 44 chain 19281 chr15 102531392 + 99073548 99073802 AluSc 308 + 22 297 129285 84 1 0 122 7 31 20 2 0 18 chain 3301 chr15 102531392 + 99093550 99093589 LTR12C 1709 + 1121 1160 218963 39 chain 25644 chr15 102531392 + 99229142 99229859 L1MB3 1562 - 17 696 101518 13 1 0 8 1 0 81 48 22 26 0 2 9 7 8 25 1 0 22 10 11 42 1 0 23 128 0 10 36 132 97 51 75 5 0 3 9 3 0 13 4 0 43 chain 6221 chr15 102531392 + 99241780 99241860 L1MB2 1706 - 225 305 183398 80 chain 27652 chr15 102531392 + 99268912 99269265 THE1A 353 - 0 353 94204 64 1 0 114 0 1 64 2 1 24 0 1 84 chain 3291 chr15 102531392 + 99373724 99373763 MSTB 430 - 29 68 219153 39 chain 3121 chr15 102531392 + 99379433 99379468 L1MC4a 1092 - 0 35 222534 35 chain 24652 chr15 102531392 + 99412660 99412955 AluSp 311 - 9 303 106711 71 1 0 223 chain 25741 chr15 102531392 + 99521956 99522255 AluSc 308 - 8 307 101115 299 chain 15256 chr15 102531392 + 99523130 99523401 L1PB1 5432 + 5173 5422 140614 46 3 2 15 1 0 45 1 0 15 25 12 19 2 0 19 2 0 7 1 2 15 1 0 21 1 0 13 1 0 18 chain 485330 chr15 102531392 + 99530933 99537072 L1PA7 6471 + 16 6470 7546 41 0 1 111 19 19 10 1 0 4 1 6 6 5 0 13 18 18 161 3 0 160 0 1 42 1 0 90 32 32 202 15 17 40 6 5 98 0 13 162 1 0 9 2 0 353 0 1 138 1 5 69 1 0 693 5 25 849 0 4 83 4 0 39 0 3 32 0 3 346 5 10 55 1 0 222 0 2 48 0 1 117 0 2 108 0 1 317 0 2 140 4 5 386 9 0 266 0 4 8 0 3 85 0 2 177 6 11 38 0 271 42 1 2 35 11 7 21 7 0 8 0 8 139 10 0 7 chain 100873 chr15 102531392 + 99543094 99544479 LTR12C 1709 + 0 1709 36544 4 1 0 334 10 53 68 0 1 4 0 1 22 3 4 10 10 11 38 1 0 111 0 280 171 9 6 28 0 8 54 27 20 39 1 0 139 0 2 65 0 3 123 9 7 19 1 0 84 chain 15699 chr15 102531392 + 99551228 99551413 LTR12C 1709 - 749 933 139271 123 1 0 61 chain 23942 chr15 102531392 + 99583303 99583610 AluSc5 308 + 5 306 110673 43 7 5 53 1 0 178 3 0 22 chain 23188 chr15 102531392 + 99598203 99598576 MSTA 426 + 16 424 114732 54 1 0 38 23 48 49 4 0 7 9 13 73 8 19 107 chain 18973 chr15 102531392 + 99601583 99601823 AluSc 308 + 25 275 130176 75 0 1 80 0 10 66 4 3 15 chain 23911 chr15 102531392 + 99615703 99615994 AluSq2 311 - 8 300 110859 169 0 1 122 chain 15032 chr15 102531392 + 99622197 99622452 L1PREC2 3366 + 2661 2901 141229 90 3 1 53 1 0 45 1 0 3 3 0 14 29 21 13 chain 3643 chr15 102531392 + 99692875 99692916 MSTA 426 + 385 426 212916 41 chain 27614 chr15 102531392 + 99723156 99723517 THE1D-int 1627 + 0 367 94313 31 0 1 67 5 8 202 0 2 56 chain 19162 chr15 102531392 + 99731677 99731935 THE1B 368 + 111 368 129640 9 0 1 53 1 0 17 0 2 9 2 0 92 1 0 74 chain 114595 chr15 102531392 + 99731945 99733455 THE1B-int 1605 + 16 1572 32924 97 0 3 312 28 53 73 0 12 11 9 10 43 13 14 771 5 10 10 1 0 137 chain 24899 chr15 102531392 + 99733488 99733851 THE1B 368 + 0 368 105348 19 2 0 21 0 5 114 14 13 14 9 13 94 1 0 75 chain 7922 chr15 102531392 + 99772296 99772402 Tigger3b 1229 + 528 633 171512 14 0 1 27 3 0 58 0 1 4 chain 3544 chr15 102531392 + 99809981 99810023 MER3 215 + 173 215 214637 42 chain 29881 chr15 102531392 + 99829856 99830168 AluYb8 318 + 0 312 85158 312 chain 28760 chr15 102531392 + 99832564 99832868 AluYb8 318 - 14 318 90070 304 chain 8774 chr15 102531392 + 99844305 99844415 MER58A 224 + 54 164 166798 110 chain 2684 chr15 102531392 + 99844501 99844530 L1MB7 1623 - 636 665 230387 29 chain 4610 chr15 102531392 + 99848942 99848996 MLT1E1A 663 - 22 76 199515 54 chain 29668 chr15 102531392 + 99890059 99890370 AluYb8 318 + 0 311 85962 311 chain 13674 chr15 102531392 + 99906330 99906594 MLT1B 390 - 40 275 145696 96 25 4 32 2 0 12 41 35 56 chain 521228 chr15 102531392 + 99916753 99922657 L1PA5 6144 - 12 6141 5034 113 10 0 500 1 0 217 0 4 953 0 4 676 0 1 59 0 2 255 3 0 677 0 4 472 0 2 16 0 2 392 1 3 848 0 1 623 0 217 88 chain 26968 chr15 102531392 + 99927265 99927564 AluYa5 310 - 18 310 96375 9 7 0 283 chain 326192 chr15 102531392 + 99957606 99961327 L1PA5 6144 - 9 3736 12338 128 0 7 74 6 0 1575 0 4 575 16 0 167 0 2 1002 6 14 103 1 8 68 chain 18049 chr15 102531392 + 99961332 99961536 L1PA5 6144 - 5499 5703 132738 204 chain 7527 chr15 102531392 + 99963269 99963454 L1PREC2 3366 - 318 478 173996 38 7 5 34 36 20 29 2 0 16 11 6 12 chain 21034 chr15 102531392 + 100000236 100000613 L1PA15 4387 - 31 393 123795 24 8 5 12 3 1 44 6 3 31 7 8 11 1 0 9 4 0 23 1 0 55 1 0 5 1 0 6 0 1 14 1 0 42 0 3 5 3 0 60 chain 105507 chr15 102531392 + 100033885 100035374 LTR12C 1709 - 0 1709 35371 76 16 15 77 1 0 313 11 4 11 24 0 57 0 47 271 0 131 92 10 11 23 5 6 101 4 6 5 2 0 82 0 43 45 0 27 4 1 0 180 37 41 41 chain 15381 chr15 102531392 + 100062297 100062927 L1MA4A 3247 + 2575 3126 140258 69 2 0 5 1 3 9 330 261 17 26 19 13 16 13 75 0 1 47 1 0 19 chain 4326 chr15 102531392 + 100071172 100071232 L1MA9 1812 + 963 1060 202873 12 0 36 8 0 1 40 chain 86555 chr15 102531392 + 100071296 100072302 L1PA4 6152 - 0 996 40947 160 0 1 497 12 1 337 chain 29543 chr15 102531392 + 100127263 100127612 L1PA7 6471 - 2 348 86441 10 2 0 328 1 0 8 chain 66793 chr15 102531392 + 100137036 100138010 MER11C 1089 + 0 1064 49736 110 0 90 46 0 9 13 8 9 38 4 8 45 1 0 167 68 69 79 10 12 4 1 0 38 0 1 54 16 0 73 0 1 54 1 0 144 chain 3820 chr15 102531392 + 100143020 100143060 MER50 708 - 668 708 210087 40 chain 42003 chr15 102531392 + 100169448 100169939 LTR10D 510 - 0 499 66619 70 0 1 208 1 0 124 0 9 22 2 1 64 chain 5694 chr15 102531392 + 100174032 100174104 MER58A 224 + 46 118 188169 72 chain 100379 chr15 102531392 + 100205521 100206783 L1PA7 6471 + 5189 6454 36660 118 0 5 191 2 0 99 0 4 18 12 5 508 2 0 139 0 2 58 13 16 102 chain 6152 chr15 102531392 + 100221993 100222082 HY1 111 - 1 111 183963 52 7 28 30 chain 119290 chr15 102531392 + 100223986 100225805 L1PB1 5432 - 45 2132 31296 19 34 42 12 8 0 18 4 0 15 1 0 45 1 0 14 3 2 52 2 0 9 2 0 3 2 0 12 6 4 26 7 0 6 19 10 82 0 2 41 0 7 257 10 11 76 0 1 8 0 4 81 0 9 145 0 5 314 5 4 59 0 2 25 0 3 6 6 0 232 18 21 47 11 25 29 8 263 39 chain 24795 chr15 102531392 + 100235790 100236084 AluSp 311 + 8 302 105917 294 chain 12587 chr15 102531392 + 100283091 100283278 MER2 342 + 80 266 149895 20 20 19 147 chain 23314 chr15 102531392 + 100286975 100287273 AluSx3 311 + 0 303 114134 46 6 12 75 1 0 170 chain 5608 chr15 102531392 + 100291925 100292005 MADE1 96 - 0 96 189003 32 1 17 47 chain 23907 chr15 102531392 + 100347462 100347757 AluSq10 312 + 2 298 110872 118 1 0 39 0 1 118 0 1 19 chain 498059 chr15 102531392 + 100368166 100373775 L1PA5 6144 - 6 6144 6952 20 0 1 740 1 0 89 1 0 934 1 5 582 0 1 1453 1 0 700 0 1 996 0 525 91 chain 6032 chr15 102531392 + 100383070 100383151 L1MA9 1812 + 1247 1331 184952 58 0 3 23 chain 28491 chr15 102531392 + 100391684 100392127 MLT2A1 477 - 0 477 91224 19 1 0 23 8 0 9 1 39 58 3 0 129 8 9 18 0 4 25 0 1 69 0 1 11 17 18 44 chain 61967 chr15 102531392 + 100395582 100396327 L1PA8A 6298 + 5528 6291 51913 205 1 0 440 0 19 99 chain 111514 chr15 102531392 + 100422014 100423284 L1PA4 6152 - 1171 2441 33805 352 1 0 146 7 6 413 0 2 351 chain 102481 chr15 102531392 + 100423285 100424450 L1PA4 6152 + 4982 6144 36136 708 8 4 307 2 3 140 chain 38849 chr15 102531392 + 100428332 100428814 MER9a1 513 + 0 513 70951 205 0 1 22 8 42 176 4 0 67 chain 34789 chr15 102531392 + 100428862 100429247 L1PA5 6144 - 15 400 76494 385 chain 6779 chr15 102531392 + 100434083 100434158 L1PA8 5853 - 431 506 179114 75 chain 29002 chr15 102531392 + 100434158 100434566 L1PA8 5853 + 5449 5851 88975 115 1 0 45 2 0 56 5 6 8 1 0 9 18 17 35 2 1 19 2 1 90 chain 8802 chr15 102531392 + 100447412 100447524 MSTA 426 - 309 419 166632 21 0 1 48 3 0 40 chain 10907 chr15 102531392 + 100449004 100449146 MER47B 469 + 292 433 156566 113 1 0 28 chain 4225 chr15 102531392 + 100522217 100522274 MIRb 242 + 60 115 204222 7 2 0 48 chain 108094 chr15 102531392 + 100531056 100532387 L1PA8 5853 + 4525 5847 34689 403 0 1 22 1 0 5 0 1 52 2 0 232 4 3 320 1 0 44 2 0 71 1 0 10 2 1 49 3 2 19 1 0 87 chain 6461 chr15 102531392 + 100546303 100546410 MLT1C 463 - 358 463 181551 68 17 15 22 chain 390474 chr15 102531392 + 100551941 100557013 L1PB1 5432 - 295 5413 10439 23 1 0 5 7 6 85 0 6 300 1 0 61 38 42 97 12 16 189 8 7 148 0 1 195 6 5 219 1 4 365 0 1 528 1 0 319 0 5 7 6 13 54 1 12 742 0 1 4 1 0 75 0 1 10 0 19 169 15 0 8 1 0 633 0 8 34 0 1 15 6 4 299 4 3 379 chain 89176 chr15 102531392 + 100586721 100587774 MER11C 1089 + 0 1063 39937 247 4 5 227 1 0 209 0 4 45 0 1 26 0 4 159 0 1 135 chain 34337 chr15 102531392 + 100605922 100606395 L1PA8 5853 - 0 462 77150 93 8 7 12 2 1 39 2 1 5 0 1 5 1 0 8 11 6 67 2 0 44 1 0 173 chain 537872 chr15 102531392 + 100607978 100614125 L1PA4 6152 + 7 6152 3173 1027 0 1 91 0 2 13 5 11 1191 0 2 1001 0 1 422 16 0 210 0 3 1161 12 3 136 0 4 723 1 0 132 0 5 6 chain 109617 chr15 102531392 + 100619802 100621174 HERVL-int 5654 + 4254 5654 34295 321 9 13 150 1 2 20 12 13 126 1 4 19 8 9 412 0 9 62 0 9 7 0 1 47 1 0 176 chain 31219 chr15 102531392 + 100621174 100621566 MLT2A1 477 + 0 397 82123 142 0 1 26 1 5 223 chain 532022 chr15 102531392 + 100624068 100630202 L1PA4 6152 + 7 6152 3958 687 1 0 651 1 0 56 0 1 368 10 7 724 0 1 280 8 13 429 0 1 117 5 8 1100 0 1 214 2 1 358 0 1 273 0 4 172 0 3 43 0 1 610 1 0 15 3 0 6 chain 44140 chr15 102531392 + 100671044 100671582 L1PA7 6471 + 5932 6470 64028 39 0 1 165 1 0 172 1 0 6 1 0 141 1 3 11 chain 81924 chr15 102531392 + 100686443 100687492 MER11C 1089 + 0 1063 42795 246 0 9 62 0 4 21 1 0 43 1 0 147 47 46 112 0 4 5 1 0 38 0 1 127 0 1 116 1 0 81 chain 25695 chr15 102531392 + 100738040 100738389 L1PA7 6471 + 6121 6470 101303 163 5 6 17 0 15 7 20 5 124 1 0 12 chain 20775 chr15 102531392 + 100750208 100750464 AluY 311 + 51 311 124697 75 0 1 16 5 8 160 chain 20775 chr15 102531392 + 100784222 100784517 THE1B 368 - 62 368 124701 66 9 8 18 9 14 31 1 0 123 0 8 38 chain 4274 chr15 102531392 + 100835537 100835589 LTR50 688 + 94 146 203557 52 chain 28248 chr15 102531392 + 100842910 100843325 MLT2A1 477 + 0 407 92124 149 32 30 24 0 1 30 0 1 150 4 0 9 3 0 6 1 0 7 chain 9601 chr15 102531392 + 100867239 100867367 MER85 139 - 0 139 162593 22 1 0 7 2 14 96 chain 273898 chr15 102531392 + 100895677 100900041 L1PBa 3878 + 188 3777 14979 49 3 1 11 4 6 271 1 0 98 0 1 77 0 3 56 2 3 229 307 0 293 0 1 14 0 5 308 5 0 232 0 1 58 455 11 225 0 1 90 0 1 473 0 2 188 8 10 134 0 1 98 30 6 75 3 0 494 1 0 21 34 26 11 1 0 5 chain 35163 chr15 102531392 + 100897710 100898136 L1PA7 6471 + 6046 6466 75966 85 3 0 327 3 0 8 chain 238656 chr15 102531392 + 100901843 100904674 L1PA7 6471 + 3631 6466 16844 1183 0 2 804 2 1 401 17 19 95 0 1 88 1 2 88 1 0 151 chain 16306 chr15 102531392 + 100904689 100905043 L1PB1 5432 + 5102 5424 137466 12 7 0 24 1 0 4 3 2 12 2 0 3 2 0 9 2 0 45 13 12 11 1 0 45 1 0 15 2 0 6 1 0 11 30 19 10 1 5 23 1 0 22 1 0 12 1 0 8 1 0 12 chain 542016 chr15 102531392 + 100905479 100911502 L1PA3long 6157 + 6 6157 2501 477 2 3 286 4 132 2204 1 0 1177 0 1 1604 10 8 254 0 1 4 chain 8050 chr15 102531392 + 100912362 100912509 L1PA16 3655 + 3424 3578 170760 26 1 0 4 31 39 85 chain 30265 chr15 102531392 + 100917225 100917558 L1PA5 6144 - 1 334 84020 333 chain 26954 chr15 102531392 + 100921321 100921739 LTR14A 344 + 0 344 96436 45 3 0 8 41 0 58 31 0 160 0 1 72 chain 24040 chr15 102531392 + 100947001 100947349 THE1B 368 - 19 368 110119 30 0 10 6 3 1 26 1 0 5 0 1 61 15 9 32 4 3 165 chain 128298 chr15 102531392 + 100954348 100956163 L1PA8 5853 + 4058 5853 28496 172 0 1 263 2 0 5 0 2 229 12 4 52 0 2 223 0 11 132 123 103 181 0 2 107 0 1 16 1 0 44 2 0 71 1 0 14 14 9 8 0 2 28 2 1 11 9 8 93 chain 553271 chr15 102531392 + 100957276 100963301 L1PA2 6032 + 3 6029 1040 361 0 1 2500 0 1 182 0 1 243 1 0 2582 1 0 155 chain 101763 chr15 102531392 + 100975611 100976842 L1PA8 5853 + 4628 5853 36327 382 2 0 212 0 3 60 9 8 271 1 0 44 2 0 72 1 0 60 3 2 18 1 0 93 chain 26133 chr15 102531392 + 100980461 100980805 LTR7 482 + 0 475 99466 71 4 93 60 0 1 8 0 31 52 0 10 149 chain 317554 chr15 102531392 + 100980814 100984746 HERVH-int 3825 + 0 3825 12696 333 1 0 150 13 121 13 2 1 13 87 0 25 43 0 41 1 0 31 84 0 52 2 0 7 3 8 293 0 1 299 2 0 162 1 0 1034 1 0 5 0 1 1072 0 1 162 chain 29037 chr15 102531392 + 100986005 100986406 LTR7 482 + 0 482 88820 71 9 47 55 0 1 50 9 10 33 0 31 16 0 10 158 chain 16137 chr15 102531392 + 101003397 101003587 AluSc 308 + 38 228 137945 190 chain 12908 chr15 102531392 + 101074692 101074875 MER4A1 472 + 0 184 148604 29 2 1 24 12 14 116 chain 4798 chr15 102531392 + 101074916 101074969 MER4A1 472 - 419 472 197382 53 chain 83955 chr15 102531392 + 101090650 101091702 MER11C 1089 + 0 1073 41923 220 0 5 22 9 18 52 0 4 65 1 0 304 7 9 38 0 1 127 0 1 54 1 0 144 0 1 8 chain 6031 chr15 102531392 + 101100919 101100986 U6 107 - 29 96 184965 67 chain 13416 chr15 102531392 + 101107299 101107459 Tigger3a 397 - 92 250 146651 79 2 0 79 chain 347454 chr15 102531392 + 101115512 101119384 L1PA5 6144 + 2263 6138 11685 1223 0 1 260 1 0 200 1 0 402 0 4 1785 chain 24986 chr15 102531392 + 101132143 101132536 MER51B 395 + 9 382 104881 23 18 7 42 0 5 31 10 18 110 1 0 4 1 2 93 26 4 34 chain 13108 chr15 102531392 + 101136753 101136932 LTR9 672 + 0 184 147816 13 0 4 131 9 10 26 chain 5885 chr15 102531392 + 101178588 101178660 HY1 111 + 39 111 186326 72 chain 17787 chr15 102531392 + 101178898 101179139 L1PA8 5853 - 6 243 133457 87 1 0 16 1 0 52 6 5 8 1 0 69 chain 527027 chr15 102531392 + 101213787 101219897 L1PA6 6164 - 2 6164 4499 10 1 0 129 1 0 8 0 13 168 0 1 2143 0 1 499 0 1 368 0 1 221 0 1 272 0 1 123 1 3 342 0 1 837 2 1 111 0 4 438 1 0 61 1 0 27 0 8 14 19 40 22 0 1 65 0 1 226 chain 4009 chr15 102531392 + 101272104 101272150 MIRb 242 + 67 113 207243 46 chain 49486 chr15 102531392 + 101290737 101291499 L1PA14 3548 - 107 842 59398 26 1 0 19 1 0 9 14 11 33 5 1 11 1 0 33 1 0 77 1 0 33 0 1 4 0 1 45 1 0 6 2 0 17 4 0 109 2 0 5 2 0 12 12 8 27 2 0 14 3 1 15 0 2 62 1 2 121 2 1 29 chain 7733 chr15 102531392 + 101293436 101293556 L1PB1 5432 + 5308 5420 172690 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 128497 chr15 102531392 + 101313776 101315222 SVA_D 2077 - 8 2067 28455 128 0 20 380 0 3 93 0 2 6 0 49 46 0 2 21 0 477 43 0 37 35 3 7 4 1 0 670 0 20 16 chain 4416 chr15 102531392 + 101355920 101356018 L1MD 993 + 43 140 201724 33 30 29 35 chain 2966 chr15 102531392 + 101440523 101440558 MER103C 291 - 126 161 225762 35 chain 11955 chr15 102531392 + 101491339 101491735 L1MB7 1623 + 1072 1423 152383 115 157 118 18 1 0 12 1 0 9 1 0 12 43 40 27 chain 12143 chr15 102531392 + 101572500 101572645 L1PA4 6152 - 12 160 151636 70 0 3 75 chain 22741 chr15 102531392 + 101578013 101578438 L1PB1 5432 + 4903 5313 116865 28 2 3 148 38 35 18 1 0 8 2 1 11 8 4 9 1 0 52 20 18 43 1 0 15 2 0 6 1 0 11 chain 34371 chr15 102531392 + 101612691 101613129 LTR7 482 + 1 480 77102 225 21 0 10 0 52 28 0 10 154 chain 300737 chr15 102531392 + 101613166 101616786 HERVH-int 3825 + 21 3825 13382 509 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 25 15 14 1 0 12 4 1 25 1 0 30 2 0 5 7 6 16 21 0 66 0 1 4 2 0 409 0 4 32 15 0 456 4 31 585 0 1 282 1 0 5 0 1 530 0 210 44 1 0 4 1 2 445 chain 39282 chr15 102531392 + 101618043 101618498 LTR7 482 + 0 482 70348 52 4 0 178 0 31 221 chain 24456 chr15 102531392 + 101625830 101626125 AluSp 311 - 14 310 107773 38 0 1 196 0 1 8 2 1 51 chain 19881 chr15 102531392 + 101641923 101642265 LTR12F 595 + 0 400 127547 103 11 136 18 66 0 131 1 0 12 chain 11014 chr15 102531392 + 101776440 101776737 THE1B 368 + 0 304 156146 82 61 62 15 80 86 59 chain 10664 chr15 102531392 + 101782065 101782292 MER2 342 - 33 289 157543 8 0 11 51 9 12 5 2 0 81 15 0 9 30 62 17 chain 3762 chr15 102531392 + 101803536 101803582 L1ME1 1623 - 489 534 210917 33 1 0 12 chain 32849 chr15 102531392 + 101827402 101827776 L1PA5 6144 - 12 386 79459 6 1 0 362 0 1 5 chain 2683 chr15 102531392 + 101915884 101915912 MER82 654 - 155 183 230399 28 chain 147774 chr15 102531392 + 101942020 101943636 L1PA3long 6157 + 4541 6157 24912 1616 chain 5571 chr15 102531392 + 101953352 101953417 L1MDa 1598 + 1377 1442 189360 65 chain 27797 chr15 102531392 + 101955829 101956184 THE1A 353 + 0 353 93707 110 1 0 88 1 0 155 chain 90963 chr15 102531392 + 101956184 101957295 THE1A-int 1579 + 0 1112 39304 21 0 1 557 0 1 233 5 4 295 chain 6902 chr15 102531392 + 101957314 101957392 THE1A 353 + 120 198 178170 78 chain 11902 chr15 102531392 + 101957393 101957549 THE1A 353 + 198 353 152594 21 1 0 134 chain 5327 chr15 102531392 + 102044155 102044325 MER53 195 - 27 194 191752 31 72 73 21 12 8 34 chain 5786 chr15 102531392 + 102053753 102053976 L1MC1 2226 - 28 234 187311 14 1 0 22 130 115 18 1 0 37 chain 3262 chr15 102531392 + 102057712 102057748 L1MA7 2200 - 704 740 219746 36 chain 41678 chr15 102531392 + 102090873 102091445 MER4A1_ 611 + 3 595 67057 18 0 5 44 12 27 28 2 0 70 0 1 103 0 2 6 2 0 219 16 17 52 chain 28458 chr15 102531392 + 102123920 102124299 L1PA8 5853 - 5 378 91338 88 1 0 19 4 3 59 2 1 70 2 0 46 1 0 87 chain 224208 chr15 102531392 + 102132796 102136069 L1PB1 5432 - 40 3271 17639 22 8 0 24 2 0 14 1 0 5 3 1 18 25 14 13 1 0 45 2 1 16 1 0 41 83 81 158 16 17 4 0 1 103 10 11 33 0 4 138 3 0 636 6 0 25 6 5 216 33 26 346 1 2 102 0 1 35 28 29 97 1 3 150 5 6 25 10 11 19 0 3 15 5 1 33 3 0 9 5 8 231 10 0 84 14 15 334 chain 11746 chr15 102531392 + 102136538 102136699 L1PB1 5432 + 2966 3123 153270 41 12 8 108 chain 13454 chr15 102531392 + 102164612 102164829 MER30 238 - 0 238 146512 72 30 54 6 4 0 90 0 1 15 chain 27191 chr15 102531392 + 102165403 102165762 THE1C 375 - 18 375 95627 7 1 0 88 0 1 141 5 3 117 chain 551442 chr15 102531392 + 102166653 102172678 L1PA2 6032 + 2 6029 1261 255 1 0 107 0 1 118 2 3 623 1 0 1914 0 1 68 0 1 2936 chain 7336 chr15 102531392 + 102203409 102203495 L1PA5 6144 - 12 98 175187 86 chain 50313 chr15 102531392 + 102207143 102207780 Tigger1 2417 - 932 1566 58782 18 0 1 81 0 1 92 5 0 441 chain 23526 chr15 102531392 + 102214753 102215036 AluY 311 + 26 311 112979 106 0 1 54 0 1 123 chain 7307 chr15 102531392 + 102232114 102232286 MLT2B1 522 + 318 515 175395 21 43 56 62 17 29 29 chain 23325 chr15 102531392 + 102236136 102236442 AluY 311 + 0 311 114055 15 3 0 86 0 10 32 3 0 54 10 11 103 chain 28164 chr15 102531392 + 102255352 102255648 AluYa5 310 - 14 310 92415 296 chain 17587 chr15 102531392 + 102262028 102262256 MER47A 366 + 65 295 134032 57 0 2 171 chain 9205 chr15 102531392 + 102313515 102313624 7SLRNA 320 - 98 207 164532 109 chain 34189 chr15 102531392 + 102337278 102338003 L1PB1 5432 + 4738 5420 77366 19 17 1 46 1 0 8 2 4 77 0 1 4 1 0 67 17 21 53 7 8 5 1 0 26 0 1 24 1 2 9 3 0 24 5 4 4 1 0 10 6 2 11 8 6 22 1 0 23 2 1 16 1 0 44 82 65 24 1 0 21 1 0 11 1 0 18 chain 22381 chr15 102531392 + 102343146 102343437 AluY 311 + 4 300 118578 122 0 1 20 6 9 107 6 7 30 chain 22738 chr15 102531392 + 102379550 102379820 L1PA5 6144 - 4 276 116879 143 0 1 112 0 1 15 chain 24104 chr15 102531392 + 102379864 102380139 L1PA3long 6157 - 0 275 109729 275 chain 15567 chr15 102531392 + 102389853 102390047 L1PA5 6144 + 5930 6130 139673 59 1 8 34 1 0 99 chain 76239 chr15 102531392 + 102400179 102401147 LTR5_Hs 974 - 0 974 45342 102 21 19 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 14597 chr15 102531392 + 102402074 102402434 THE1B 368 + 2 368 142603 77 36 38 34 84 89 58 24 23 47 chain 23561 chr15 102531392 + 102405230 102405767 L2c 621 + 100 615 112788 24 26 14 35 15 16 68 70 77 9 9 0 60 1 0 113 18 12 53 11 13 11 4 0 10 chain 508234 chr15 102531392 + 102420480 102426896 L1PA7 6471 - 3 6471 6302 9 2 0 142 1 2 54 0 2 143 0 1 46 1 0 423 7 11 17 1 0 12 0 1 256 1 0 457 1 2 194 2 0 52 0 2 129 0 35 124 0 5 251 0 1 88 1 0 174 1 0 144 3 7 160 0 1 26 2 0 74 13 11 6 0 7 299 17 17 352 0 1 97 0 1 229 2 3 458 0 1 505 5 0 441 5 6 87 23 17 225 0 1 4 1 0 20 7 8 59 1 8 28 0 1 112 10 7 148 2 3 63 3 2 196 chain 64964 chr15 102531392 + 102429354 102430076 L1PA4 6152 + 5252 5974 50589 722 chain 8592 chr15 102531392 + 102431991 102432089 L1PA5 6144 - 0 98 167773 98 chain 23214 chr15 102531392 + 102434752 102435138 L1PA8A 6298 - 123 428 114624 26 83 6 9 4 0 264 chain 23307 chr15 102531392 + 102443723 102443991 L1PA5 6144 + 5872 6142 114166 70 0 2 198 chain 164891 chr15 102531392 + 102455642 102457437 L1PA2 6032 - 1050 2845 22666 1795 chain 96536 chr15 102531392 + 102457439 102458490 L1PA2 6032 + 4981 6032 37682 1051 chain 30050 chr15 102531392 + 102459439 102459811 L1PA7 6471 - 363 739 84643 18 14 18 340 chain 28661 chr15 102531392 + 102459811 102460152 L1PA7 6471 + 6122 6465 90484 334 0 2 7 chain 20970 chr15 102531392 + 102466199 102466433 L1PA4 6152 - 9 243 124029 234 chain 4264 chr15 102531392 + 102482597 102482730 L1PA14 3548 - 109 234 203703 21 30 42 9 15 0 25 5 1 10 1 0 17 chain 6201 chr15 102531392 + 102484662 102484731 LTR12F 595 + 411 480 183576 69 chain 5065 chr15 102531392 + 102497060 102497121 L1P1 4361 - 1338 1399 194481 61 chain 42703 chr15 102531392 + 102497127 102497635 L1PA6 6164 + 5652 6162 65770 494 0 1 5 0 1 9 chain 7471 chr15 102531392 + 102500339 102500434 MLT1A 405 - 271 368 174336 15 0 1 38 0 1 42 chain 114571 chr16 90354753 + 69903 71270 L1P1 4361 - 2956 4346 32931 114 0 10 44 1 0 1101 7 21 100 chain 3989 chr16 90354753 + 71953 72028 L1MC 810 - 497 570 207541 23 8 7 7 1 0 36 chain 41157 chr16 90354753 + 91011 91490 LTR15 485 + 0 485 67703 70 0 1 301 0 5 108 chain 22732 chr16 90354753 + 124661 125025 LTR7 482 + 0 482 116910 23 0 23 20 15 70 64 1 11 10 1 2 16 1 0 21 1 32 13 0 1 59 1 2 22 3 0 93 chain 17092 chr16 90354753 + 138227 138410 AluYb8 318 + 129 312 135342 183 chain 23141 chr16 90354753 + 161117 161383 AluY 311 + 2 268 114930 103 1 0 27 0 1 135 chain 15637 chr16 90354753 + 182967 183173 Tigger1 2417 - 1536 1745 139475 177 5 8 24 chain 25012 chr16 90354753 + 196180 196478 AluY 311 + 0 293 104722 125 5 0 168 chain 9526 chr16 90354753 + 198187 198301 AluY 311 + 12 132 162949 32 1 7 81 chain 13051 chr16 90354753 + 198301 198463 AluY 311 + 133 295 148024 162 chain 23550 chr16 90354753 + 233899 234204 AluY 311 + 0 300 112847 123 6 1 8 0 1 132 2 1 34 chain 26592 chr16 90354753 + 286623 286918 AluYf5 307 + 0 297 97692 273 0 2 22 chain 56684 chr16 90354753 + 308154 308770 SVA_D 2077 - 0 616 54730 616 chain 16057 chr16 90354753 + 353180 353375 MER61A 341 + 0 196 138195 180 0 1 15 chain 19441 chr16 90354753 + 359054 359275 AluY 311 + 6 228 128846 126 0 1 95 chain 106155 chr16 90354753 + 391083 392390 LTR12C 1709 + 0 1709 35223 211 2 5 291 0 20 123 0 278 184 1 0 4 4 2 99 7 11 212 0 101 77 15 14 77 chain 5192 chr16 90354753 + 483919 484052 L1MA4A 3247 - 62 187 193129 6 3 0 30 43 38 5 1 0 23 0 1 22 chain 6193 chr16 90354753 + 489300 489396 HY3 101 - 3 100 183631 41 13 14 42 chain 2612 chr16 90354753 + 544800 544845 AluJb 308 + 45 225 231523 19 1 136 25 chain 21442 chr16 90354753 + 545751 546017 AluSp 311 - 14 279 122363 32 1 0 233 chain 22825 chr16 90354753 + 673367 673656 AluY 311 + 0 302 116467 118 4 0 91 0 1 8 9 25 59 chain 43816 chr16 90354753 + 689142 690450 PABL_A 660 - 0 660 64431 134 7 8 78 217 0 71 8 44 98 0 1 135 480 6 18 0 1 8 3 7 51 chain 25098 chr16 90354753 + 741495 741800 AluSp 311 - 13 311 104303 11 7 0 287 chain 24305 chr16 90354753 + 763050 763347 AluSp 311 + 11 311 108633 129 5 6 115 0 2 48 chain 3576 chr16 90354753 + 797586 797630 THE1D 372 + 313 356 214036 27 1 0 16 chain 4128 chr16 90354753 + 827658 827709 MER49 923 + 220 271 205534 51 chain 13785 chr16 90354753 + 853987 854149 L1PA5 6144 + 5983 6144 145318 49 1 0 112 chain 3801 chr16 90354753 + 859312 859435 MLT2B3 573 - 373 504 210383 22 66 74 35 chain 11473 chr16 90354753 + 985471 985623 MER30 238 - 3 178 154407 43 3 0 67 0 26 39 chain 23760 chr16 90354753 + 1079778 1080074 AluSg 306 + 8 303 111708 114 5 4 177 chain 24344 chr16 90354753 + 1161400 1161698 AluSg7 307 - 10 307 108400 167 1 0 130 chain 21285 chr16 90354753 + 1340510 1341748 MER50 708 - 25 679 122915 37 0 1 83 859 273 150 32 34 20 35 34 22 chain 42954 chr16 90354753 + 1343421 1344280 MER41A 554 - 0 554 65471 123 0 1 6 309 0 163 0 2 219 0 1 39 chain 21133 chr16 90354753 + 1345147 1345902 MER4D 903 + 306 776 123436 93 330 36 114 27 29 75 91 98 25 chain 33293 chr16 90354753 + 1346831 1347313 LTR10A 586 - 70 586 78738 233 7 46 11 5 24 19 9 0 4 17 0 65 5 7 107 chain 4524 chr16 90354753 + 1348054 1348107 MER4E1 777 - 530 583 200508 53 chain 23318 chr16 90354753 + 1379364 1379655 AluY 311 + 14 302 114105 83 0 2 192 5 0 11 chain 6333 chr16 90354753 + 1410639 1410759 MER1B 344 + 215 339 182519 46 33 37 41 chain 29761 chr16 90354753 + 1418321 1418636 AluYb8 318 + 0 315 85600 315 chain 5363 chr16 90354753 + 1471827 1471885 LTR8 732 + 300 358 191396 58 chain 11672 chr16 90354753 + 1473848 1473989 MER41A 554 - 0 141 153591 141 chain 23221 chr16 90354753 + 1485514 1485801 AluSp 311 - 0 286 114594 179 1 0 107 chain 24577 chr16 90354753 + 1523802 1524098 AluSp 311 + 0 295 107095 52 2 0 4 0 1 238 chain 136282 chr16 90354753 + 1648778 1650474 SVA_F 1814 + 335 1814 26786 562 0 1 50 228 14 39 1 0 4 1 0 182 1 0 617 1 0 10 chain 5352 chr16 90354753 + 1649393 1649487 SVA_F 1814 + 966 1187 143382 72 0 1 4 13 139 5 chain 11507 chr16 90354753 + 1649487 1649618 SVA_F 1814 + 962 1089 113356 39 3 0 10 1 0 78 chain 22296 chr16 90354753 + 1755387 1755671 AluSz 310 + 5 305 118927 127 0 1 5 4 19 148 chain 20598 chr16 90354753 + 1771069 1771327 AluSp 311 + 13 301 125302 90 0 1 25 0 3 120 0 26 23 chain 22092 chr16 90354753 + 1780579 1780858 AluSc8 310 + 17 301 119831 108 1 4 149 0 2 21 chain 10259 chr16 90354753 + 1846961 1847160 THE1C 375 + 151 375 159330 21 53 70 16 0 9 83 1 0 25 chain 76870 chr16 90354753 + 1847190 1849391 THE1C-int 1605 + 18 1597 45047 78 0 57 15 3 0 36 0 2 69 0 4 56 0 2 76 1143 459 41 1 0 4 3 4 90 22 23 72 3 0 190 0 3 130 1 0 168 chain 20394 chr16 90354753 + 1875043 1875285 AluSg 306 + 6 248 125908 117 1 0 113 0 1 11 chain 4095 chr16 90354753 + 1883917 1883963 L1P1 4361 + 2809 2855 206002 46 chain 27741 chr16 90354753 + 1896517 1899663 L1PA8 5853 + 5410 5853 93902 151 8 7 41 2 0 69 2 1 13 2 1 47 2 1 20 2697 0 92 chain 23664 chr16 90354753 + 1953439 1953720 AluSx1 309 + 14 295 112229 281 chain 89940 chr16 90354753 + 1980829 1981858 LTR5A 1029 + 0 1029 39671 73 0 1 73 1 0 882 chain 107895 chr16 90354753 + 2007337 2008737 LTR12C 1709 - 0 1709 34757 73 18 17 108 0 4 16 3 1 18 21 22 39 1 0 183 5 9 101 4 2 4 1 0 126 0 278 242 0 2 68 2 0 31 0 1 82 1 0 4 0 1 57 1 0 102 0 29 89 chain 22647 chr16 90354753 + 2062533 2062825 AluSp 311 - 17 311 117343 12 4 5 73 8 9 195 chain 24242 chr16 90354753 + 2105623 2105910 AluSq4 311 + 12 301 108983 119 0 1 127 3 4 38 chain 22129 chr16 90354753 + 2109510 2109794 AluSp 311 - 5 286 119666 24 9 6 251 chain 21564 chr16 90354753 + 2181238 2181511 AluY 311 + 8 285 121906 124 0 1 22 10 13 117 chain 25352 chr16 90354753 + 2181971 2182266 AluSp 311 + 2 297 102940 295 chain 7647 chr16 90354753 + 2250880 2250969 L1P1 4361 - 1484 1573 173242 89 chain 59613 chr16 90354753 + 2269338 2269990 SVA_D 2077 - 1 653 53043 652 chain 27116 chr16 90354753 + 2299591 2299906 AluY 311 + 1 311 95879 125 6 0 133 0 1 51 chain 39308 chr16 90354753 + 2351827 2352302 MER9a1 513 + 0 513 70310 123 0 16 105 2 24 245 chain 24721 chr16 90354753 + 2356744 2357045 AluY 311 + 10 310 106321 122 0 1 127 11 9 41 chain 22992 chr16 90354753 + 2364581 2364861 AluSp 311 - 16 299 115659 261 0 3 19 chain 15566 chr16 90354753 + 2372386 2372580 L1PA4 6152 - 0 198 139680 6 0 5 138 2 1 48 chain 19042 chr16 90354753 + 2417168 2417456 AluSp 311 + 0 295 129995 86 0 4 99 46 49 57 chain 11876 chr16 90354753 + 2447972 2448155 MER21A 919 - 5 196 152720 28 1 4 38 16 17 65 1 5 34 chain 136191 chr16 90354753 + 2449313 2450819 SVA_D 2077 - 0 2077 26800 639 0 535 138 0 40 698 4 0 27 chain 24586 chr16 90354753 + 2456190 2456474 AluY 311 + 17 302 107054 115 0 1 169 chain 6225 chr16 90354753 + 2469388 2469464 L1MB8 1703 + 1206 1282 183360 76 chain 50727 chr16 90354753 + 2469501 2470057 L1PA2 6032 + 5476 6032 58486 556 chain 4109 chr16 90354753 + 2508766 2508841 MIRb 242 + 102 178 205783 25 16 17 34 chain 23984 chr16 90354753 + 2539162 2539438 AluY 311 + 12 288 110419 276 chain 22684 chr16 90354753 + 2542820 2543100 AluSx 319 + 9 289 117144 123 0 1 74 1 0 82 chain 27282 chr16 90354753 + 2571770 2572084 AluYf4 310 - 4 310 95333 6 6 0 36 2 0 264 chain 21680 chr16 90354753 + 2655412 2655704 AluY 311 + 4 292 121465 128 12 13 140 5 0 7 chain 88093 chr16 90354753 + 2710262 2711288 LTR13 1007 - 0 1007 40338 171 0 4 402 5 1 30 19 0 399 chain 88284 chr16 90354753 + 2719525 2720538 LTR13 1007 - 0 1007 40267 577 11 1 204 0 4 221 chain 24014 chr16 90354753 + 2731316 2731610 AluSg7 307 - 12 307 110253 120 0 1 174 chain 25132 chr16 90354753 + 2734488 2734792 AluYk4 311 + 4 308 104115 304 chain 29449 chr16 90354753 + 2797483 2797793 AluYa5 310 - 0 310 86852 310 chain 6224 chr16 90354753 + 2831926 2832036 MER41D 557 + 460 557 183378 60 13 0 14 5 6 4 1 0 13 chain 22622 chr16 90354753 + 2840283 2840539 AluSp 311 - 44 300 117475 256 chain 13643 chr16 90354753 + 2843011 2843212 L1MB1 2102 - 246 445 145804 92 19 17 90 chain 11329 chr16 90354753 + 2850591 2850930 Tigger3 1187 - 289 618 154969 22 36 40 38 1 0 47 36 33 13 1 0 18 46 40 22 10 9 17 2 1 18 1 0 11 chain 140526 chr16 90354753 + 2851338 2852861 SVA_F 1814 - 0 1804 26069 15 0 1 524 0 176 87 0 64 79 0 40 818 chain 26599 chr16 90354753 + 2874976 2875357 THE1C 375 - 0 375 97666 25 1 0 160 1 0 12 6 7 51 3 0 10 14 12 98 chain 26351 chr16 90354753 + 2895687 2896561 MER4B 649 + 0 513 98611 29 1 0 83 1 0 4 3 5 38 8 9 18 8 31 90 0 1 14 344 0 20 1 16 66 4 1 13 98 44 31 chain 15461 chr16 90354753 + 2914501 2914758 AluJr4 308 + 34 292 140016 92 59 60 106 chain 24767 chr16 90354753 + 2936517 2936811 AluSp 311 - 6 301 106071 31 0 1 263 chain 24392 chr16 90354753 + 2945345 2945620 AluYc3 301 + 0 276 108125 113 1 2 161 chain 87489 chr16 90354753 + 2956554 2958062 LTR13 1007 - 8 1007 40570 180 0 1 388 7 1 202 504 0 227 chain 44901 chr16 90354753 + 2957335 2957835 LTR2C 499 + 0 499 63176 441 1 0 58 chain 25258 chr16 90354753 + 2981832 2982136 AluY 311 + 0 300 103426 118 2 0 15 2 0 167 chain 41889 chr16 90354753 + 3126839 3127349 MER9a2 513 - 0 513 66772 129 0 1 318 0 2 63 chain 245116 chr16 90354753 + 3127353 3130472 HERVK9-int 4720 - 3 4714 16505 130 2 0 161 0 3 30 0 3 56 1 0 356 0 4 559 0 1 74 51 689 99 0 1 48 8 18 11 0 2 52 0 924 247 6 5 215 0 1 44 2 1 585 7 8 43 0 1 184 1 0 30 1 0 5 5 4 65 1 0 4 20 32 16 chain 37850 chr16 90354753 + 3131057 3131510 MER9a2 513 - 12 466 72342 117 0 1 336 chain 4129 chr16 90354753 + 3132165 3132216 U1 164 + 0 51 205513 51 chain 6928 chr16 90354753 + 3132586 3132681 THE1D 372 - 36 267 177981 85 0 136 10 chain 25271 chr16 90354753 + 3134658 3134984 THE1D-int 1627 - 1278 1611 103366 34 0 8 269 1 0 22 chain 34249 chr16 90354753 + 3135292 3135763 LTR15 485 + 4 478 77284 59 2 1 86 0 2 124 4 8 153 1 0 5 10 8 6 0 1 21 chain 8164 chr16 90354753 + 3136201 3136301 U1 164 + 64 164 170144 100 chain 7021 chr16 90354753 + 3200674 3200747 tRNA-Arg-CGG 73 + 0 73 177320 73 chain 6044 chr16 90354753 + 3202900 3202965 tRNA-Arg-AGG 67 + 0 65 184861 65 chain 3998 chr16 90354753 + 3207435 3207478 tRNA-Lys-AAG 49 - 6 49 207427 43 chain 6948 chr16 90354753 + 3208922 3208994 tRNA-Pro-CCA 73 + 0 72 177835 72 chain 5253 chr16 90354753 + 3210385 3210480 tRNA-Pro-CCY 72 + 0 72 192492 36 27 4 32 chain 24859 chr16 90354753 + 3210810 3211087 AluY 311 + 29 307 105570 96 0 1 181 chain 66838 chr16 90354753 + 3215496 3216430 LTR13 1007 - 51 1006 49713 64 2 0 78 1 2 70 0 2 14 18 27 10 1 0 59 1 0 111 0 14 28 3 0 7 1 4 7 2 0 69 15 16 103 0 2 186 0 3 6 6 1 72 chain 4176 chr16 90354753 + 3220980 3221026 tRNA-Pro-CCA 73 - 22 68 204904 46 chain 6957 chr16 90354753 + 3222048 3222120 tRNA-Pro-CCG 72 + 0 72 177768 72 chain 4120 chr16 90354753 + 3225691 3225734 tRNA-Lys-AAG 49 + 0 43 205657 43 chain 36761 chr16 90354753 + 3227175 3227621 LTR10F 562 + 0 562 73861 133 0 116 313 chain 3989 chr16 90354753 + 3230584 3230627 tRNA-Lys-AAG 49 - 6 49 207559 43 chain 6948 chr16 90354753 + 3232634 3232706 tRNA-Pro-CCY 72 - 0 72 177844 72 chain 6948 chr16 90354753 + 3234132 3234204 tRNA-Pro-CCA 73 - 1 73 177838 72 chain 3222 chr16 90354753 + 3235554 3235621 MLT1B 390 + 265 334 220543 12 18 20 37 chain 6948 chr16 90354753 + 3238093 3238165 tRNA-Pro-CCA 73 + 0 72 177834 72 chain 6948 chr16 90354753 + 3239633 3239705 tRNA-Pro-CCY 72 + 0 72 177841 72 chain 3998 chr16 90354753 + 3241500 3241543 tRNA-Lys-AAG 49 + 0 43 207426 43 chain 6817 chr16 90354753 + 3241988 3242060 tRNA-Pro-CCY 72 + 0 72 178828 72 chain 5660 chr16 90354753 + 3243917 3243982 tRNA-Arg-AGG 67 + 0 65 188486 65 chain 21330 chr16 90354753 + 3249742 3250028 AluSp 311 + 11 294 122757 19 3 1 111 3 0 6 0 3 8 2 1 134 chain 86607 chr16 90354753 + 3255534 3256647 MER11A 1151 + 0 1141 40927 196 1 0 4 6 7 21 1 0 64 14 9 87 0 1 107 0 3 299 9 8 26 9 32 134 0 8 135 chain 25666 chr16 90354753 + 3263077 3263373 AluSc 308 + 0 295 101421 126 1 0 169 chain 3986 chr16 90354753 + 3278809 3278854 MSTB 430 - 385 430 207591 45 chain 63070 chr16 90354753 + 3320802 3321558 SVA_D 2077 - 0 1117 51419 588 1 352 26 0 4 58 0 1 10 1 4 31 1 2 14 0 1 26 chain 5152 chr16 90354753 + 3324693 3324769 MER51A 677 - 420 493 193532 16 0 7 34 10 0 16 chain 6762 chr16 90354753 + 3325911 3325988 LTR45C 530 + 0 77 179235 77 chain 70452 chr16 90354753 + 3380929 3381699 L1PA3long 6157 - 541 1311 48184 770 chain 47773 chr16 90354753 + 3381699 3382232 L1PA3long 6157 + 5620 6153 60640 533 chain 26353 chr16 90354753 + 3423690 3424160 L1PA15 4387 - 21 482 98605 10 1 0 28 6 1 10 3 1 41 26 23 30 6 5 11 4 0 21 4 6 49 4 8 18 1 0 170 1 0 14 0 3 12 chain 28373 chr16 90354753 + 3430835 3431223 MER75 514 - 19 419 91685 166 4 6 62 10 13 80 0 7 66 chain 144887 chr16 90354753 + 3435315 3436940 L1PA4 6152 + 4511 6140 25344 787 0 4 838 chain 23914 chr16 90354753 + 3445306 3445649 THE1C 375 + 6 373 110844 81 0 1 50 1 5 10 26 45 175 chain 28250 chr16 90354753 + 3452448 3452757 AluYk4 311 - 2 311 92110 309 chain 52067 chr16 90354753 + 3471349 3472467 L1PA14 3548 - 92 860 57583 34 3 0 7 1 0 18 6 4 15 4 2 27 9 7 10 1 0 113 1 0 54 17 9 19 1 0 6 2 0 11 10 6 109 2 0 5 2 0 47 2 0 10 329 8 153 0 4 90 chain 3345 chr16 90354753 + 3474546 3474604 L1M3de 1393 - 42 99 218140 26 9 8 23 chain 21244 chr16 90354753 + 3499683 3500000 THE1B 368 + 1 345 123043 37 2 17 48 0 1 64 2 0 30 0 1 15 29 41 90 chain 22907 chr16 90354753 + 3526779 3527049 AluSp 311 + 20 290 116079 270 chain 24467 chr16 90354753 + 3528953 3529252 AluSp 311 + 0 294 107719 120 5 0 174 chain 23894 chr16 90354753 + 3542788 3543078 AluY 311 + 0 304 110930 52 0 16 55 2 0 181 chain 20123 chr16 90354753 + 3548626 3548866 AluY 311 + 49 288 126758 196 1 0 43 chain 77929 chr16 90354753 + 3577107 3578111 LTR13 1007 + 0 1007 44555 73 2 0 308 4 5 307 2 6 81 12 14 6 2 0 15 0 1 159 2 1 31 chain 5402 chr16 90354753 + 3609096 3609161 MER101 471 + 406 471 190972 65 chain 10485 chr16 90354753 + 3635604 3635730 L1MB7 1623 + 1058 1184 158308 126 chain 23431 chr16 90354753 + 3667060 3667356 AluSp 311 + 0 311 113471 40 4 19 252 chain 9360 chr16 90354753 + 3667847 3667988 MLT1A0 366 + 218 366 163753 23 11 13 39 0 5 68 chain 23100 chr16 90354753 + 3717926 3718222 AluSg7 307 - 5 307 115146 26 1 2 184 0 1 8 0 4 77 chain 17825 chr16 90354753 + 3733889 3734146 AluSz 310 + 5 257 133319 192 28 23 37 chain 3103 chr16 90354753 + 3756808 3756920 L1MB7 1623 - 211 319 222867 33 62 58 17 chain 3866 chr16 90354753 + 3769084 3769235 MER4D1 891 - 344 493 209367 37 90 88 24 chain 24605 chr16 90354753 + 3827061 3827363 AluY 311 + 0 310 106963 64 0 7 61 0 1 177 chain 23370 chr16 90354753 + 3840367 3840638 AluSp 311 - 4 299 113814 196 0 24 75 chain 5135 chr16 90354753 + 3909121 3909181 MER21B 843 + 19 79 193737 60 chain 87036 chr16 90354753 + 3935410 3936375 L1PA3long 6157 - 10 976 40728 751 0 1 214 chain 87234 chr16 90354753 + 3936375 3937313 L1PA3long 6157 + 4236 5174 40676 938 chain 80320 chr16 90354753 + 3968042 3969099 MER11C 1089 + 0 1073 43466 246 0 9 62 0 4 65 1 0 36 3 2 260 0 1 5 1 5 4 1 0 38 0 1 127 0 1 54 1 0 26 10 9 109 0 1 8 chain 26677 chr16 90354753 + 3990064 3991591 Tigger3b 1229 + 345 941 97402 71 11 13 97 0 2 35 2 0 12 0 13 7 645 30 15 9 8 20 0 2 5 0 1 4 17 9 74 2 0 5 400 73 23 14 18 59 chain 64862 chr16 90354753 + 3991948 3992690 L1PA6 6164 + 5417 6159 50626 742 chain 4447 chr16 90354753 + 4060937 4060996 MLT1A1 405 + 263 321 201380 19 2 1 38 chain 14196 chr16 90354753 + 4077902 4078066 THE1B 368 - 204 368 143894 164 chain 3566 chr16 90354753 + 4079299 4079365 MADE2 80 + 1 67 214196 16 2 1 22 4 5 22 chain 24424 chr16 90354753 + 4126803 4127096 AluSq10 312 + 8 301 107945 293 chain 19421 chr16 90354753 + 4149979 4150324 THE1D 372 + 0 339 128894 160 5 10 9 0 52 9 65 0 53 1 3 11 1 0 4 0 1 27 chain 23482 chr16 90354753 + 4152438 4152709 AluSp 311 - 24 295 113209 271 chain 3303 chr16 90354753 + 4155097 4155136 Charlie1b 519 + 219 258 218927 39 chain 24062 chr16 90354753 + 4172466 4172778 AluY 311 + 6 311 109968 102 1 2 189 8 0 12 chain 5835 chr16 90354753 + 4178413 4178523 MLT1B 390 + 230 346 186811 44 26 32 40 chain 6800 chr16 90354753 + 4202816 4202891 L1PA3long 6157 + 6082 6157 178957 75 chain 67361 chr16 90354753 + 4206309 4207063 L1PA7 6471 + 5707 6461 49504 754 chain 10755 chr16 90354753 + 4293927 4294054 MER61-int 3695 + 1483 1610 157180 127 chain 27809 chr16 90354753 + 4297467 4297882 LTR3B 427 + 0 427 93667 173 6 28 68 33 30 33 9 3 13 1 0 79 chain 24063 chr16 90354753 + 4302983 4303264 AluSp 311 + 10 292 109965 177 0 1 104 chain 10887 chr16 90354753 + 4312918 4313127 AluJr 308 + 24 240 156631 22 55 57 22 2 7 108 chain 24663 chr16 90354753 + 4338941 4339244 AluSx1 309 + 6 309 106658 303 chain 39203 chr16 90354753 + 4380781 4381595 MER9a3 513 + 0 513 70452 171 1 0 8 321 0 91 0 18 189 7 9 4 0 1 22 chain 5073 chr16 90354753 + 4384593 4384673 MLT1C 463 - 324 398 194389 15 7 1 58 chain 24872 chr16 90354753 + 4473350 4473632 AluSp 311 - 20 302 105500 282 chain 24920 chr16 90354753 + 4475049 4475347 AluSg7 307 + 5 302 105225 79 1 0 48 1 0 125 0 1 44 chain 3044 chr16 90354753 + 4497651 4497708 LTR16E1 515 + 379 452 224132 14 6 23 30 1 0 6 chain 3749 chr16 90354753 + 4522084 4522132 L1MB7 1623 + 1376 1423 211144 15 1 0 32 chain 22044 chr16 90354753 + 4525670 4525951 AluSq2 311 + 8 297 120053 6 0 6 91 1 0 22 0 1 131 0 2 30 chain 26825 chr16 90354753 + 4531067 4531378 AluY 311 + 2 311 96893 121 1 0 10 1 0 178 chain 24688 chr16 90354753 + 4535714 4536014 AluSq10 312 - 0 302 106510 33 0 1 118 0 1 149 chain 10299 chr16 90354753 + 4537402 4537521 AluSp 311 + 13 132 159132 119 chain 18162 chr16 90354753 + 4589130 4589361 LTR8 732 + 0 232 132432 27 0 2 143 1 0 60 chain 5054 chr16 90354753 + 4595584 4595800 MER31B 477 + 200 428 194596 37 105 110 24 26 33 24 chain 25444 chr16 90354753 + 4601763 4602113 L1PA8 5853 - 6 347 102480 87 1 0 19 2 1 41 2 0 10 1 0 10 1 0 70 2 0 43 6 5 55 chain 9753 chr16 90354753 + 4607397 4607582 L1MB5 1630 + 1362 1549 161832 21 10 9 56 0 5 17 37 35 44 chain 6055 chr16 90354753 + 4619353 4619466 LTR36 617 + 0 124 184774 27 23 37 8 3 0 52 chain 24627 chr16 90354753 + 4623481 4623780 AluY 311 + 10 310 106843 122 0 1 177 chain 22416 chr16 90354753 + 4627391 4627663 AluY 311 + 8 294 118399 45 11 25 216 chain 24735 chr16 90354753 + 4678109 4678404 AluY 311 + 4 300 106248 128 0 1 122 0 1 25 1 0 19 chain 24280 chr16 90354753 + 4691516 4691819 AluSp 311 - 10 311 108773 45 1 0 148 1 0 108 chain 4934 chr16 90354753 + 4699622 4699681 MLT1C 463 - 339 398 195881 59 chain 30043 chr16 90354753 + 4724622 4724940 AluYb8 318 - 0 318 84672 318 chain 25619 chr16 90354753 + 4761099 4761403 AluSp 311 - 7 311 101628 304 chain 19548 chr16 90354753 + 4790924 4791249 AluY 311 + 21 297 128523 35 66 27 50 20 10 154 chain 3096 chr16 90354753 + 4801639 4801709 MLT1C 463 + 51 123 222999 5 0 1 27 22 23 16 chain 6380 chr16 90354753 + 4807187 4807264 LTR12C 1709 - 338 416 182179 40 0 1 37 chain 63676 chr16 90354753 + 4824357 4825051 SVA_D 2077 - 1 871 51155 670 0 176 24 chain 27392 chr16 90354753 + 4825806 4826115 AluYa5 310 - 2 310 94999 244 2 0 50 0 1 13 chain 4969 chr16 90354753 + 4959795 4959937 MER53 195 - 38 187 195487 40 51 57 27 5 6 19 chain 3207 chr16 90354753 + 5001856 5001891 HY3 101 - 65 100 220764 35 chain 24947 chr16 90354753 + 5018187 5018479 AluSp 311 - 19 311 105069 292 chain 24806 chr16 90354753 + 5025207 5025493 AluY 311 + 16 302 105855 286 chain 9821 chr16 90354753 + 5025559 5025689 L1PB2 3958 - 131 258 161490 52 1 0 21 3 1 53 chain 3768 chr16 90354753 + 5035690 5035736 L1MB8 1703 - 1290 1336 210830 46 chain 9272 chr16 90354753 + 5052891 5053012 MER85 139 - 0 131 164207 40 0 10 81 chain 3602 chr16 90354753 + 5068073 5068111 MIR 256 + 95 133 213609 38 chain 10713 chr16 90354753 + 5069096 5069288 MER30 238 + 34 238 157356 56 32 41 22 1 7 38 3 0 40 chain 13582 chr16 90354753 + 5088765 5089013 L1PB1 5432 + 5034 5281 146046 45 0 4 11 5 11 9 1 0 24 1 0 9 1 0 10 6 2 8 2 0 41 17 16 12 1 0 45 chain 15384 chr16 90354753 + 5104632 5104930 THE1B 368 + 0 306 140250 111 0 3 6 20 18 13 1 2 23 0 2 7 53 57 64 chain 6371 chr16 90354753 + 5114167 5114285 MER1A 529 + 410 529 182239 28 27 28 63 chain 25741 chr16 90354753 + 5120806 5121162 THE1B 368 + 0 368 101116 44 11 24 101 6 5 194 chain 4074 chr16 90354753 + 5151873 5151920 MLT1C 463 + 63 110 206277 47 chain 97587 chr16 90354753 + 5157704 5159069 LTR12C 1709 - 0 1709 37401 82 1 0 86 1 0 165 0 2 51 0 2 93 11 4 15 24 0 27 0 207 138 1 0 10 0 119 237 9 7 85 0 43 35 0 9 9 5 0 6 4 0 225 21 28 24 chain 28629 chr16 90354753 + 5171425 5171736 AluYf4 310 + 0 310 90617 123 1 0 187 chain 3086 chr16 90354753 + 5185125 5185160 MER5A1 166 + 101 136 223171 35 chain 22415 chr16 90354753 + 5189110 5189389 AluSp 311 + 10 287 118406 73 2 0 204 chain 20056 chr16 90354753 + 5199437 5199747 AluJb 308 + 4 307 126947 126 34 26 80 14 15 56 chain 11971 chr16 90354753 + 5205561 5205706 MER4A1 472 + 35 182 152319 11 0 2 134 chain 32989 chr16 90354753 + 5205706 5206077 L1PA2 6032 + 5659 6030 79234 371 chain 23283 chr16 90354753 + 5207417 5207702 AluSp 311 + 12 301 114287 70 0 9 196 5 0 14 chain 4674 chr16 90354753 + 5208656 5208723 MER58A 224 - 109 177 198825 20 2 3 45 chain 73661 chr16 90354753 + 5211322 5212386 MER11A 1151 + 0 1144 46703 55 1 100 75 1 0 58 10 6 32 0 4 113 0 1 93 1 2 145 2 3 111 0 5 32 24 0 12 9 16 23 18 0 34 0 1 60 6 7 6 0 1 71 3 9 69 chain 24152 chr16 90354753 + 5220486 5220829 THE1B 368 + 0 359 109466 40 0 15 114 1 0 74 5 6 38 2 1 9 6 8 54 chain 73295 chr16 90354753 + 5228132 5229104 MER11A 1151 - 0 1151 46887 60 7 6 9 0 6 150 0 35 23 5 28 154 0 1 84 4 5 260 0 4 21 0 11 125 0 99 70 chain 30542 chr16 90354753 + 5230478 5230955 MER4A1 472 + 0 472 83350 15 12 14 192 27 23 16 14 15 125 10 6 66 chain 4417 chr16 90354753 + 5233361 5233417 LTR9 672 - 516 572 201713 56 chain 107834 chr16 90354753 + 5235500 5236887 LTR12C 1709 - 0 1709 34771 68 23 22 204 0 1 186 0 4 106 3 160 91 0 118 281 5 4 85 0 43 118 6 7 211 chain 36349 chr16 90354753 + 5238212 5238712 LTR10D 510 - 7 510 74435 38 0 4 42 2 0 176 6 9 106 29 26 23 0 1 78 chain 29622 chr16 90354753 + 5242699 5243150 LTR7B 505 - 15 505 86142 36 16 15 77 1 0 82 29 0 28 6 68 69 0 10 53 3 1 51 chain 163598 chr16 90354753 + 5251748 5253733 SVA_E 1901 - 0 1901 22861 679 0 1 119 68 45 4 0 1 126 102 0 83 4 0 26 1 0 244 0 40 207 3 0 181 3 0 30 0 10 105 chain 4708 chr16 90354753 + 5252546 5252601 SVA_E 1901 - 925 978 76532 14 1 0 35 1 0 4 chain 3805 chr16 90354753 + 5252761 5252803 SVA_E 1901 - 894 936 166720 42 chain 3813 chr16 90354753 + 5252803 5252846 SVA_E 1901 - 760 803 141097 43 chain 72708 chr16 90354753 + 5271213 5272190 LTR12C 1709 - 2 1328 47163 82 4 3 58 0 101 235 44 13 96 2 0 9 2 1 95 0 278 267 0 5 83 chain 11668 chr16 90354753 + 5296973 5297131 L1MA8 2339 - 253 408 153607 77 2 1 54 2 0 23 chain 20620 chr16 90354753 + 5300276 5300542 L1PA8 5853 - 6 267 125223 87 1 0 19 2 1 61 1 0 69 4 2 22 chain 83225 chr16 90354753 + 5325351 5326481 L1PB1 5432 + 3617 4770 42239 77 1 9 17 1 6 396 0 1 35 1 0 44 9 11 171 3 4 171 4 6 41 1 5 17 1 2 140 chain 25970 chr16 90354753 + 5333935 5334293 THE1B 368 + 0 368 100137 44 13 28 104 1 0 152 5 1 39 chain 25407 chr16 90354753 + 5412373 5412662 AluSp 311 - 22 311 102647 289 chain 15098 chr16 90354753 + 5441934 5442267 L1PB1 5432 + 5114 5416 141040 24 1 0 7 2 1 12 4 0 10 2 0 9 0 1 42 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 9 8 6 2 0 24 1 0 13 9 8 13 1 0 12 chain 10152 chr16 90354753 + 5489744 5489854 THE1C 375 - 58 168 159839 110 chain 18841 chr16 90354753 + 5491664 5491983 THE1C 375 - 58 375 130542 110 0 3 6 20 12 5 0 2 51 23 23 10 18 19 76 chain 8248 chr16 90354753 + 5564836 5565159 MSTB1 431 - 10 354 169695 82 202 223 39 chain 4197 chr16 90354753 + 5585183 5585232 MER3 215 - 97 146 204587 49 chain 32399 chr16 90354753 + 5591269 5591720 MER4A1 472 - 0 472 80198 118 27 26 76 0 22 230 chain 4667 chr16 90354753 + 5591914 5591992 L1PB1 5432 - 10 86 198891 21 2 1 9 1 0 21 1 0 17 0 1 6 chain 11910 chr16 90354753 + 5597728 5597870 L1PA16 3655 + 3421 3563 152557 142 chain 18822 chr16 90354753 + 5601657 5601985 L1PA8 5853 - 11 341 130602 13 2 11 52 59 53 8 0 4 13 1 0 6 4 3 70 2 0 47 1 0 50 chain 28990 chr16 90354753 + 5602935 5603292 L1PA6 6164 + 5806 6161 89035 25 0 1 321 3 0 8 chain 3835 chr16 90354753 + 5605551 5605599 MADE1 96 + 45 94 209847 24 0 1 24 chain 32104 chr16 90354753 + 5621494 5621893 LTR3 431 + 15 431 80682 72 0 17 327 chain 39157 chr16 90354753 + 5642918 5643899 MER41A 554 + 17 554 70536 139 453 0 193 5 8 39 0 1 4 1 0 4 0 4 61 9 11 73 chain 37806 chr16 90354753 + 5643065 5643503 L1PA7 6471 + 6033 6467 72405 426 4 0 8 chain 31262 chr16 90354753 + 5644333 5644815 MER4A1 472 - 0 472 82061 24 2 0 94 0 3 49 12 14 12 6 3 40 15 10 91 5 1 108 1 0 23 chain 20776 chr16 90354753 + 5706823 5707099 L1PA8 5853 + 5583 5853 124691 25 2 0 74 1 0 6 1 0 52 2 1 19 1 0 93 chain 21393 chr16 90354753 + 5708949 5709304 L1PB2 3958 - 173 529 122531 10 2 1 21 30 41 33 1 0 62 1 0 72 2 0 94 3 0 12 2 0 10 chain 13917 chr16 90354753 + 5726002 5726252 L1PA8 5853 + 5608 5853 144864 48 48 40 39 7 6 19 1 0 65 0 5 23 chain 22525 chr16 90354753 + 5729356 5729643 L1PA8 5853 - 6 287 117913 87 1 0 19 2 1 52 1 0 6 1 0 74 2 0 42 chain 3787 chr16 90354753 + 5761305 5761355 MIR 256 - 141 195 210558 20 1 5 29 chain 4946 chr16 90354753 + 5766713 5766773 L1PA8A 6298 - 413 473 195743 60 chain 21443 chr16 90354753 + 5787870 5788146 L1PA7 6471 - 12 288 122356 150 11 12 17 1 0 97 chain 518339 chr16 90354753 + 5794953 5800999 L1PA5 6144 - 7 6141 5345 147 7 8 30 0 1 70 1 0 461 0 1 118 0 4 1252 15 71 488 0 4 91 0 1 63 0 4 119 0 1 626 0 1 114 0 3 146 0 1 467 0 5 28 13 14 127 1 0 943 1 0 422 5 7 208 0 5 83 chain 76255 chr16 90354753 + 5804392 5805356 LTR5_Hs 974 - 4 974 45333 99 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 25248 chr16 90354753 + 5834141 5834441 AluY 311 + 1 292 103484 128 5 0 152 4 0 11 chain 67928 chr16 90354753 + 5858242 5859008 L1PA3long 6157 - 1322 2088 49271 766 chain 115326 chr16 90354753 + 5859021 5860336 L1PA3long 6157 + 4843 6157 32672 541 1 0 611 7 6 6 0 1 149 chain 2640 chr16 90354753 + 5864517 5864566 MIRb 242 - 117 168 231165 26 7 9 16 chain 29215 chr16 90354753 + 5864647 5864963 AluYb8 318 + 0 315 87983 132 1 0 183 chain 12566 chr16 90354753 + 5872138 5872420 L1PB1 5432 + 5161 5420 149986 8 2 0 53 1 0 15 1 0 44 1 0 15 1 0 4 79 65 5 1 0 21 1 0 13 1 0 16 chain 10504 chr16 90354753 + 5886654 5886801 MER20 218 - 34 176 158232 27 1 0 73 5 1 41 chain 4951 chr16 90354753 + 5934489 5934566 MLT1J1 437 + 47 125 195699 42 7 8 28 chain 29650 chr16 90354753 + 5947017 5947335 AluYb9 318 - 0 318 86064 318 chain 25783 chr16 90354753 + 5988914 5989245 L1PA5 6144 + 5804 6138 100944 86 1 2 187 0 2 57 chain 16842 chr16 90354753 + 5999303 5999504 AluY 311 + 58 260 136010 74 0 1 127 chain 14559 chr16 90354753 + 6003365 6003682 L1PB1 5432 - 11 298 142708 7 0 1 9 1 0 13 1 0 21 1 0 12 29 26 5 2 0 30 14 1 15 5 4 41 1 0 15 2 1 53 2 0 8 6 2 10 1 0 13 chain 3060 chr16 90354753 + 6003876 6003928 MER53 195 - 106 159 223812 14 7 8 31 chain 4879 chr16 90354753 + 6043572 6043634 UCON19 139 - 19 81 196499 62 chain 10708 chr16 90354753 + 6063700 6063816 L1PA4 6152 - 333 449 157382 116 chain 23960 chr16 90354753 + 6063816 6064115 L1PA4 6152 + 5844 6143 110567 152 0 7 10 8 1 129 chain 40556 chr16 90354753 + 6165925 6166423 L1PA7 6471 + 5964 6464 68502 188 5 6 164 0 1 141 chain 7441 chr16 90354753 + 6220060 6220149 MER57A1 433 - 344 433 174511 89 chain 153935 chr16 90354753 + 6272720 6274441 L1PA3long 6157 - 16 1738 24097 176 0 1 1323 4 0 131 0 4 87 chain 4381 chr16 90354753 + 6277877 6277925 L1MA8 2339 + 1730 1778 202178 48 chain 26781 chr16 90354753 + 6285403 6285993 L1PB1 5432 + 4965 5420 97043 112 3 6 20 129 19 12 1 0 12 1 0 12 15 9 53 2 1 60 1 0 15 25 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 0 2 17 chain 20527 chr16 90354753 + 6299270 6299523 AluSg7 307 + 25 279 125553 106 0 1 147 chain 26238 chr16 90354753 + 6305663 6306053 L1PA8 5853 + 5465 5853 99059 50 1 0 49 7 6 8 0 1 29 2 0 74 1 0 58 2 1 19 3 2 44 0 4 43 chain 23690 chr16 90354753 + 6332380 6332730 L1PA8 5853 - 0 340 112083 23 16 12 57 2 1 19 2 1 61 2 1 70 2 0 46 1 0 49 chain 41823 chr16 90354753 + 6340808 6341336 MER41A 554 - 8 554 66861 73 0 5 230 0 13 225 chain 8888 chr16 90354753 + 6341456 6341598 PRIMA4_LTR 623 + 0 142 166200 89 20 21 8 1 0 24 chain 40973 chr16 90354753 + 6346833 6347362 MER41A 554 - 24 554 67951 102 0 1 222 10 0 8 0 10 187 chain 15523 chr16 90354753 + 6389977 6390175 LTR26B 539 - 334 539 139818 95 0 7 103 chain 33172 chr16 90354753 + 6395716 6396182 MER4A1 472 - 0 469 78948 267 31 32 143 1 0 8 4 7 12 chain 23868 chr16 90354753 + 6400171 6400471 AluSp 311 + 16 311 111093 131 6 1 163 chain 56669 chr16 90354753 + 6405135 6405818 L1PA7 6471 - 5 682 54741 9 6 0 668 chain 3745 chr16 90354753 + 6453139 6453261 MER5A1 166 + 27 165 211255 37 26 40 14 2 0 6 20 24 17 chain 26176 chr16 90354753 + 6494330 6494693 THE1B 368 + 0 368 99295 78 1 0 4 0 1 86 1 0 31 2 0 102 12 20 46 chain 22952 chr16 90354753 + 6503133 6503405 L1PA7 6471 - 19 291 115844 272 chain 23725 chr16 90354753 + 6503405 6503685 L1P3 4156 + 3678 3956 111904 155 1 0 79 1 0 44 chain 7702 chr16 90354753 + 6529615 6529729 THE1D 372 - 212 325 172927 82 12 11 20 chain 42761 chr16 90354753 + 6551158 6551644 L1PA4 6152 - 16 499 65709 318 0 1 130 4 0 34 chain 21060 chr16 90354753 + 6563452 6563762 AluSq10 312 + 0 297 123693 30 27 27 231 13 0 9 chain 26838 chr16 90354753 + 6624425 6624727 AluYa5 310 - 7 310 96847 287 0 1 15 chain 6005 chr16 90354753 + 6628848 6629042 L1PB1 5432 + 5263 5430 185195 18 1 0 15 1 0 4 2 0 10 9 0 3 0 1 9 31 21 20 7 6 22 2 1 11 1 0 10 2 1 8 1 0 7 chain 29752 chr16 90354753 + 6670129 6670557 L1PREC2 3366 + 848 1282 85643 36 27 31 319 6 8 40 chain 53117 chr16 90354753 + 6673455 6674055 L1PA4 6152 - 9 611 56949 450 0 2 150 chain 5934 chr16 90354753 + 6685887 6686118 Tigger4b 360 - 43 282 185845 11 0 3 62 140 145 18 chain 3639 chr16 90354753 + 6702805 6702849 L1MB3 1562 + 1461 1505 212977 44 chain 8789 chr16 90354753 + 6721633 6721826 L1PB1 5432 - 136 318 166712 14 4 3 43 1 0 15 2 1 41 13 11 9 5 1 11 1 0 13 7 6 14 chain 45689 chr16 90354753 + 6738650 6739190 L1PA7 6471 - 10 551 62325 133 0 1 407 chain 3593 chr16 90354753 + 6743480 6743649 HAL1-2a_MD 234 + 62 144 213795 21 59 6 18 13 0 13 9 0 9 13 1 14 chain 7929 chr16 90354753 + 6751653 6751812 L1PA15 4387 + 4209 4356 171450 8 3 0 50 6 3 41 23 17 28 chain 8137 chr16 90354753 + 6775494 6775588 MER41B 635 + 363 457 170300 94 chain 24084 chr16 90354753 + 6786235 6786739 L1PB1 5432 - 41 534 109839 21 1 0 23 11 25 14 16 8 4 1 0 16 1 0 43 1 0 16 2 1 53 2 0 5 97 87 22 16 16 139 chain 70862 chr16 90354753 + 6804710 6805500 L1PA3long 6157 - 0 795 47981 12 0 3 535 0 2 243 chain 12691 chr16 90354753 + 6815541 6815876 L1PB3 3668 + 3235 3565 149482 56 1 0 39 7 0 28 28 47 23 68 54 18 1 0 3 1 0 25 19 19 18 chain 3330 chr16 90354753 + 6832476 6832515 L1MA4 2864 - 2695 2734 218393 39 chain 21931 chr16 90354753 + 6869431 6869732 AluSp 311 + 0 308 120493 17 4 13 112 12 10 156 chain 4464 chr16 90354753 + 6887948 6888011 MER66A 478 + 136 200 201187 42 4 5 17 chain 30700 chr16 90354753 + 6888025 6888447 L1PA8 5853 - 0 415 83036 92 5 4 13 1 0 51 1 0 14 2 1 68 2 0 46 1 0 126 chain 24853 chr16 90354753 + 6891857 6892159 AluY 311 + 0 300 105606 123 8 4 148 0 2 23 chain 32192 chr16 90354753 + 6892668 6893107 L1PA8 5853 - 0 442 80537 93 1 0 19 2 1 35 5 6 6 2 0 14 1 0 71 2 0 46 1 0 96 0 9 27 5 6 13 chain 48908 chr16 90354753 + 6894872 6895591 L1PA11 4918 - 431 1146 59802 15 2 0 64 2 1 12 1 0 63 2 0 6 0 1 106 1 4 89 24 25 27 4 1 196 6 8 5 2 0 92 chain 36204 chr16 90354753 + 6974684 6975098 L1PA4 6152 - 1 409 74622 154 7 1 253 chain 3971 chr16 90354753 + 6986889 6986932 L1PA2 6032 - 173 216 207814 43 chain 14523 chr16 90354753 + 6986932 6987103 L1PA2 6032 + 5858 6026 142813 158 3 0 10 chain 27465 chr16 90354753 + 7007406 7007763 MER41A 554 - 183 544 94760 180 6 10 171 chain 43407 chr16 90354753 + 7009967 7010527 PABL_B 668 + 100 668 64927 134 1 2 183 0 4 8 1 4 233 chain 10385 chr16 90354753 + 7068667 7068799 L1PA5 6144 + 6010 6144 158761 120 1 3 11 chain 37218 chr16 90354753 + 7086744 7087472 MER41A 554 - 57 554 73214 16 1 2 48 0 2 23 16 0 9 27 2 260 5 0 78 188 0 57 chain 31587 chr16 90354753 + 7117539 7117904 L1PA3long 6157 - 0 366 81514 7 0 1 358 chain 15029 chr16 90354753 + 7155342 7155682 L1PB1 5432 - 2 326 141237 8 1 0 18 1 0 13 1 0 21 1 0 23 3 1 14 1 0 5 2 0 18 17 7 6 2 0 16 1 0 44 1 0 17 2 1 24 10 25 10 6 2 10 4 3 6 1 0 24 1 0 8 chain 3849 chr16 90354753 + 7224977 7225025 L1MB7 1623 - 462 510 209650 48 chain 6454 chr16 90354753 + 7259361 7259442 MLT1B 390 - 217 298 181607 81 chain 10939 chr16 90354753 + 7262697 7262837 L1PA8 5853 + 5715 5853 156447 29 1 0 16 2 1 92 chain 22417 chr16 90354753 + 7264903 7265220 L1PA8 5853 - 0 310 118395 93 1 0 19 2 1 40 6 0 6 3 6 9 1 0 71 2 0 47 0 1 17 chain 21463 chr16 90354753 + 7265222 7265477 L1PA8 5853 + 5247 5502 122282 255 chain 13860 chr16 90354753 + 7275755 7275906 L1PA5 6144 + 5984 6135 145033 151 chain 22050 chr16 90354753 + 7282573 7282875 AluSp 311 + 13 302 120018 232 7 0 30 13 7 20 chain 29869 chr16 90354753 + 7332611 7333194 L1PB1 5432 - 14 548 85216 14 1 0 4 5 8 22 1 0 24 2 0 14 1 0 5 2 0 30 14 1 15 1 0 45 1 0 15 2 1 53 2 0 8 120 93 182 chain 5988 chr16 90354753 + 7335716 7335794 L1MD2 1676 - 312 389 185347 42 1 0 35 chain 37608 chr16 90354753 + 7395830 7396254 L1PA5 6144 - 0 424 72673 424 chain 74687 chr16 90354753 + 7436245 7437176 L1PA7 6471 - 10 950 46166 78 0 1 50 9 12 83 0 4 155 2 0 461 0 3 93 chain 3988 chr16 90354753 + 7449599 7449787 MLT1C 463 - 207 395 207562 16 127 127 45 chain 30876 chr16 90354753 + 7476899 7477270 L1PA5 6144 + 5768 6138 82723 197 5 4 169 chain 24859 chr16 90354753 + 7498928 7499219 AluSp 311 - 10 301 105572 291 chain 23448 chr16 90354753 + 7506891 7507188 AluSp 311 - 10 311 113388 51 0 1 42 15 18 189 chain 4642 chr16 90354753 + 7535874 7535930 MER58A 224 + 49 105 199158 56 chain 6880 chr16 90354753 + 7614576 7614710 MLT1A 405 + 247 382 178355 26 40 41 68 chain 16388 chr16 90354753 + 7643986 7644176 L1PA6 6164 - 6 196 137241 190 chain 5205 chr16 90354753 + 7658658 7658719 MIR 256 + 76 137 192974 61 chain 2884 chr16 90354753 + 7688770 7688801 MER58A 224 - 144 175 227292 31 chain 57314 chr16 90354753 + 7777418 7778046 L1PA2 6032 - 1879 2507 54147 628 chain 169164 chr16 90354753 + 7778046 7779919 L1PA2 6032 + 4145 6032 22156 139 0 5 142 0 9 1426 5 0 7 0 5 154 chain 37550 chr16 90354753 + 7786494 7787038 MLT2A2 560 - 14 560 72756 73 1 3 225 76 78 46 2 0 121 chain 43261 chr16 90354753 + 7793757 7794324 L1PA8 5853 - 0 580 65103 112 2 1 45 0 1 4 0 2 9 3 2 59 0 4 5 0 1 46 1 0 37 0 5 146 0 3 98 chain 3731 chr16 90354753 + 7804558 7804600 MSTB-int 1649 - 1607 1649 211457 42 chain 54141 chr16 90354753 + 7813723 7814486 MER4E 760 + 0 760 56271 49 9 0 115 1 0 173 9 2 30 8 10 55 1 0 15 14 18 124 24 29 116 0 2 12 0 2 8 chain 14742 chr16 90354753 + 7823606 7823797 MSTA 426 - 227 419 142129 148 1 0 22 0 2 20 chain 14228 chr16 90354753 + 7826190 7826550 THE1B 368 + 0 368 143800 10 0 4 63 57 58 34 66 71 66 14 13 29 5 4 16 chain 31450 chr16 90354753 + 7837763 7838196 MLT2A1 477 + 0 477 81730 169 4 1 9 0 1 22 0 1 162 0 7 13 4 0 7 10 48 27 0 4 6 chain 21321 chr16 90354753 + 7862247 7862636 THE1D 372 + 0 372 122796 52 22 14 5 1 0 74 1 0 11 1 2 20 53 46 116 1 0 32 chain 36580 chr16 90354753 + 7863785 7864432 LTR9B 643 + 0 643 74124 118 1 2 12 5 6 63 7 6 126 24 25 61 45 44 45 1 15 18 7 0 34 2 0 7 10 1 11 15 14 35 chain 20505 chr16 90354753 + 7864738 7865096 LTR7 482 + 0 482 125613 43 36 74 15 2 53 39 8 40 25 5 6 124 12 14 49 chain 279987 chr16 90354753 + 7865098 7868737 HERVH-int 3825 + 0 3825 14644 212 0 11 110 1 0 201 1 0 7 1 0 4 0 1 24 1 21 12 7 1 15 0 37 27 2 0 15 2 1 21 105 0 59 0 1 5 3 1 443 15 0 57 0 1 4 1 0 138 1 0 256 4 31 222 5 0 77 0 10 112 0 3 45 0 1 4 0 1 879 9 11 39 8 218 260 0 2 225 chain 1999 chr16 90354753 + 7865774 7865815 HERVH-int 3825 + 651 691 200973 5 1 0 35 chain 41968 chr16 90354753 + 7872512 7873057 MER41A 554 + 0 554 66661 28 0 3 8 9 10 419 0 5 81 chain 22132 chr16 90354753 + 7898689 7899068 THE1C 375 - 11 375 119659 14 1 0 137 60 42 28 16 20 123 chain 30421 chr16 90354753 + 7915549 7915964 L1PA8 5853 + 5440 5847 83651 124 4 3 41 2 0 80 1 0 23 7 5 26 1 0 18 1 0 87 chain 30787 chr16 90354753 + 7923507 7923867 L1PA7 6471 - 10 370 82886 360 chain 22393 chr16 90354753 + 7925170 7925410 L1HS 6032 + 5792 6032 118518 240 chain 4350 chr16 90354753 + 7949341 7949412 MADE1 96 - 0 87 202583 34 7 23 30 chain 54688 chr16 90354753 + 7952761 7953349 SVA_D 2077 - 4 592 55915 588 chain 17172 chr16 90354753 + 7974023 7974248 L1PA7 6471 - 3 223 135104 7 4 0 152 12 11 50 chain 13952 chr16 90354753 + 7997108 7997380 L1PB1 5432 + 5174 5422 144744 46 2 1 15 1 0 45 1 0 9 31 18 19 7 4 15 3 1 23 1 0 21 1 0 13 1 0 18 chain 8971 chr16 90354753 + 8002991 8003109 MER85 139 + 18 139 165768 29 0 4 37 1 0 51 chain 4312 chr16 90354753 + 8037084 8037130 L1MB2 1706 - 16 62 203065 46 chain 60272 chr16 90354753 + 8051214 8052000 L1PA8A 6298 - 1413 2217 52625 206 3 15 229 4 5 72 7 11 212 0 1 53 chain 105838 chr16 90354753 + 8052000 8053384 L1PA8A 6298 + 4898 6291 35300 88 9 1 236 0 1 66 18 3 9 0 16 11 0 1 157 1 0 18 1 2 66 0 1 179 17 31 303 1 0 204 chain 55802 chr16 90354753 + 8058529 8059134 L1PA3long 6157 - 512 1117 55247 605 chain 46269 chr16 90354753 + 8059134 8059652 L1PA3long 6157 + 5634 6152 61798 518 chain 23178 chr16 90354753 + 8060850 8061152 AluSp 311 + 10 304 114776 199 8 7 82 7 0 6 chain 30163 chr16 90354753 + 8066622 8066937 AluYb8 318 + 0 315 84297 315 chain 19665 chr16 90354753 + 8070852 8071085 AluY 311 + 57 291 128208 75 0 1 158 chain 27231 chr16 90354753 + 8085790 8086210 L1PA8 5853 - 0 400 95492 42 17 5 46 2 1 18 2 1 41 1 0 11 2 1 5 1 0 65 11 9 44 1 0 111 chain 32105 chr16 90354753 + 8094843 8095284 MER41B 635 + 0 451 80680 88 2 7 30 1 2 279 17 21 24 chain 270499 chr16 90354753 + 8107921 8110803 L1HS 6032 + 3150 6032 15164 2882 chain 33681 chr16 90354753 + 8110821 8111195 L1PA3long 6157 + 5774 6157 78126 340 0 9 34 chain 18330 chr16 90354753 + 8121459 8121794 THE1C 375 - 39 375 131988 48 80 81 24 2 1 11 1 2 169 chain 19112 chr16 90354753 + 8136619 8136890 AluSc8 310 + 10 290 129786 27 10 16 79 0 3 5 8 5 7 0 3 135 chain 30360 chr16 90354753 + 8152203 8152622 L1PA8 5853 + 5439 5852 83755 125 1 0 44 2 0 70 6 5 5 1 0 35 1 2 15 2 1 19 1 0 92 chain 125982 chr16 90354753 + 8164397 8165934 SVA_D 2077 + 16 2074 29108 709 55 15 27 3 1 30 0 3 16 0 40 35 1 519 285 0 2 376 chain 4709 chr16 90354753 + 8165106 8165161 SVA_D 2077 + 569 624 122171 55 chain 39593 chr16 90354753 + 8168374 8168922 MLT2A2 560 - 0 560 69897 73 0 1 52 23 34 85 0 1 116 15 14 184 chain 36687 chr16 90354753 + 8179228 8179713 LTR10D 510 - 0 510 73974 233 5 7 34 6 5 122 1 19 19 0 6 65 chain 23169 chr16 90354753 + 8179713 8180089 MER4A 717 - 241 716 114820 38 5 6 78 1 21 60 50 128 144 chain 5007 chr16 90354753 + 8209406 8209536 MER1B 344 + 203 344 195051 15 57 68 58 chain 75421 chr16 90354753 + 8228762 8229730 LTR5_Hs 974 - 0 974 45809 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 186988 chr16 90354753 + 8273159 8275303 L1PA5 6144 - 2 2173 20334 14 3 0 144 6 35 181 1 0 173 0 2 844 1 0 504 0 1 273 chain 35693 chr16 90354753 + 8275304 8275714 L1PA5 6144 + 3553 3963 75280 410 chain 37645 chr16 90354753 + 8281158 8281734 L1PA8 5853 - 38 607 72629 54 2 1 13 73 70 67 3 1 45 6 5 313 chain 3690 chr16 90354753 + 8310285 8310327 LTR1B 797 + 625 667 212078 42 chain 20841 chr16 90354753 + 8316841 8319091 L1PB3 3668 - 578 1729 124483 92 12 5 5 2 0 156 0 1 5 1879 796 7 0 2 46 10 0 36 chain 3917 chr16 90354753 + 8330897 8330940 MER4A1 472 - 14 57 208597 43 chain 21489 chr16 90354753 + 8330965 8331226 AluY 311 + 42 304 122181 90 0 1 171 chain 19827 chr16 90354753 + 8342526 8343224 L1MA8 2339 + 1606 2266 127722 17 64 60 153 20 17 20 10 9 49 5 0 24 2 0 12 224 195 19 44 38 12 0 13 12 1 0 10 chain 17304 chr16 90354753 + 8383719 8384113 THE1D 372 + 0 372 134779 50 165 144 146 1 0 32 chain 32909 chr16 90354753 + 8422534 8422980 L1PA8 5853 + 5412 5853 79354 103 1 2 47 1 0 45 2 0 69 11 10 54 1 0 18 1 0 93 chain 23021 chr16 90354753 + 8460317 8460691 L1PB3 3668 + 3204 3566 115525 76 11 21 89 2 1 84 23 7 17 2 0 4 1 0 25 3 1 37 chain 20346 chr16 90354753 + 8462041 8462430 L1PB1 5432 + 5032 5391 126077 71 3 2 9 3 0 24 1 0 9 16 11 9 2 0 52 1 0 18 1 0 44 1 0 15 3 0 7 14 5 19 21 19 24 1 0 21 chain 67499 chr16 90354753 + 8487981 8489020 L1PB1 5432 - 28 1046 49449 13 1 0 21 1 0 26 2 0 12 8 5 19 19 8 4 1 0 16 1 0 40 9 8 11 2 1 53 32 25 4 1 0 24 1 0 5 7 6 84 0 1 4 23 31 40 4 5 229 0 1 322 chain 14986 chr16 90354753 + 8489043 8489253 L1PBa1 4058 - 3133 4001 141367 41 0 1 44 6 663 119 chain 3547 chr16 90354753 + 8576174 8576211 MSTA 426 + 263 300 214587 37 chain 10608 chr16 90354753 + 8576611 8576759 MSTA 426 + 257 413 157787 43 11 19 94 chain 23092 chr16 90354753 + 8634975 8635302 THE1B 368 - 28 360 115187 97 5 4 9 1 0 12 0 4 13 7 10 14 0 1 7 1 0 161 chain 7714 chr16 90354753 + 8700459 8700553 AluJb 308 + 65 294 172835 12 0 135 82 chain 18554 chr16 90354753 + 8745640 8745885 L1PA8 5853 + 5610 5853 131348 130 2 1 19 1 0 93 chain 28670 chr16 90354753 + 8761157 8761544 L1PA8 5853 - 0 379 90450 91 1 0 21 2 1 47 18 15 68 2 0 46 1 0 90 chain 26758 chr16 90354753 + 8798946 8799313 THE1D 372 - 0 372 97138 32 1 0 67 0 1 78 31 32 30 0 4 128 chain 4213 chr16 90354753 + 8820903 8820985 L1MA1 4479 - 317 394 204385 11 1 0 8 9 7 31 2 0 20 chain 135761 chr16 90354753 + 8826074 8827671 SVA_F 1814 - 3 1808 26886 14 3 0 610 1 0 8 45 18 72 0 1 8 15 43 72 2 17 60 1 0 104 0 196 582 chain 3229 chr16 90354753 + 8826710 8826755 SVA_F 1814 - 734 779 127563 45 chain 24132 chr16 90354753 + 8842947 8843243 AluSq4 311 - 15 311 109578 164 1 0 102 0 1 29 chain 3885 chr16 90354753 + 8871253 8871303 MLT1J 494 - 208 258 209103 50 chain 6911 chr16 90354753 + 8896848 8896974 MER20 218 - 60 178 178105 60 31 23 35 chain 23754 chr16 90354753 + 8910323 8910603 AluSp 311 + 8 287 111749 71 1 0 208 chain 11535 chr16 90354753 + 8925013 8925157 LTR8 732 - 574 722 154166 93 0 4 51 chain 29720 chr16 90354753 + 8926903 8927325 LTR7B 505 - 6 505 85760 45 9 6 5 0 2 54 0 1 21 1 0 44 1 2 39 0 2 26 3 27 12 0 38 60 0 10 8 0 3 94 chain 276971 chr16 90354753 + 8928580 8938883 HERVH-int 3825 - 0 3825 14820 225 0 2 260 8 218 39 9 11 183 6 7 317 0 6 204 0 4 323 0 3 13 0 4 39 1 0 36 0 1 210 8 35 349 6 7 65 6806 0 356 4 0 80 0 4 45 1 0 81 1 0 15 22 91 12 1 0 10 1 0 38 5 0 150 0 2 89 0 2 101 0 4 184 chain 68765 chr16 90354753 + 8930921 8931827 HERVH-int 3825 - 2603 3601 48914 314 4 0 69 0 2 56 0 3 13 0 2 6 0 1 57 2 1 15 68 148 153 0 4 133 0 5 16 chain 30892 chr16 90354753 + 8931828 8932257 LTR7B 505 - 2 505 82696 49 14 13 54 0 1 21 1 0 44 1 2 39 0 2 26 3 27 12 0 38 57 0 10 108 chain 162103 chr16 90354753 + 8935477 8937687 HERVH-int 3825 - 0 2299 23038 225 0 2 260 8 218 37 0 2 108 165 0 115 1 2 5 1 0 775 0 1 48 0 13 147 8 7 144 4 31 159 chain 30855 chr16 90354753 + 8938885 8939314 LTR7B 505 - 2 505 82759 49 14 13 52 0 1 23 1 0 46 0 1 38 0 2 26 3 27 12 0 38 60 0 10 105 chain 23413 chr16 90354753 + 8964217 8964495 AluYc 301 + 0 276 113578 113 2 4 127 4 0 32 chain 24306 chr16 90354753 + 9059125 9059421 AluSp 311 + 5 298 108628 213 6 1 44 0 2 33 chain 126414 chr16 90354753 + 9069766 9071242 L1PA5 6144 - 1 1480 28967 10 2 1 367 0 1 296 0 1 154 0 1 377 0 1 270 chain 22071 chr16 90354753 + 9074708 9074977 AluSp 311 - 21 291 119918 170 1 2 98 chain 111942 chr16 90354753 + 9075323 9076581 SVA_C 1631 + 20 1621 33681 5 0 1 4 0 1 6 0 5 14 3 0 654 0 336 491 0 3 81 chain 13512 chr16 90354753 + 9095277 9095555 AluJb 308 - 16 297 146312 112 98 100 40 0 1 28 chain 23952 chr16 90354753 + 9106540 9106828 AluSp 311 + 4 294 110606 128 1 0 143 0 2 4 0 1 12 chain 24013 chr16 90354753 + 9126925 9127238 THE1-int 844 + 514 826 110257 124 0 6 57 5 0 14 0 1 55 2 0 34 1 0 21 chain 9210 chr16 90354753 + 9128762 9128895 MSTA 426 - 23 177 164502 33 0 1 44 9 29 47 chain 24213 chr16 90354753 + 9160882 9161197 AluY 311 + 0 309 109129 133 12 6 170 chain 7501 chr16 90354753 + 9169673 9169802 MER63A 208 - 7 137 174151 24 11 16 14 5 0 59 1 2 15 chain 52237 chr16 90354753 + 9171615 9172685 MER4E1 777 - 24 765 57472 22 0 1 31 1 3 138 9 8 64 2 0 57 323 0 77 2 1 107 1 0 11 3 4 44 1 0 68 2 0 100 2 0 5 chain 4976 chr16 90354753 + 9178577 9178678 7SLRNA 320 + 166 273 195409 10 1 0 4 3 8 13 6 7 36 1 2 27 chain 21301 chr16 90354753 + 9241546 9241827 MER1A 529 - 8 287 122857 55 0 1 4 6 4 180 1 0 35 chain 26300 chr16 90354753 + 9257841 9258125 AluYg6 310 + 19 303 98833 284 chain 54202 chr16 90354753 + 9260347 9260949 SVA_A 1864 + 1273 1864 56231 56 11 0 535 chain 4928 chr16 90354753 + 9262514 9262605 MLT1C 463 + 169 256 195958 30 22 18 39 chain 14141 chr16 90354753 + 9291471 9291751 L1PB1 5432 - 5 260 144069 5 1 0 4 1 0 14 1 0 13 1 0 19 1 0 26 2 0 14 1 0 7 3 1 16 16 6 6 2 0 12 8 7 41 1 0 15 2 1 48 chain 56234 chr16 90354753 + 9310943 9311578 L1PA4 6152 + 5500 6138 55005 497 4 7 134 chain 9365 chr16 90354753 + 9316948 9317079 MSTA 426 + 256 408 163730 37 6 27 88 chain 36920 chr16 90354753 + 9329055 9329536 MER4A1 472 - 0 472 73631 204 0 1 80 0 1 133 1 0 23 1 0 12 9 0 18 chain 9099 chr16 90354753 + 9331125 9331365 MLT1A 405 - 33 281 165074 52 43 44 28 45 58 14 7 1 51 chain 29756 chr16 90354753 + 9331422 9331798 MSTA 426 + 30 407 85626 173 2 3 201 chain 52968 chr16 90354753 + 9338018 9338685 PABL_B 668 + 0 668 57036 236 0 1 6 1 0 188 1 4 151 13 11 71 chain 4043 chr16 90354753 + 9339551 9339610 MLT2C2 476 - 136 187 206761 8 8 0 43 chain 71931 chr16 90354753 + 9379426 9380234 L1PA4 6152 - 9 818 47509 134 0 1 674 chain 211903 chr16 90354753 + 9385746 9388092 L1PA3long 6157 - 1 2358 18367 1281 0 11 1065 chain 59020 chr16 90354753 + 9388092 9388743 L1PA3long 6157 + 3145 3795 53383 44 1 0 606 chain 19074 chr16 90354753 + 9390851 9391068 L1PA7 6471 - 1 216 129894 7 2 0 208 chain 101676 chr16 90354753 + 9410982 9412094 L1PA3long 6157 - 5 1117 36349 1112 chain 51281 chr16 90354753 + 9441234 9442043 L1MA3 4352 - 3530 4351 58129 12 0 9 28 2 0 20 11 12 290 0 5 37 5 6 76 12 15 6 2 0 127 0 1 6 8 7 14 4 3 97 18 17 12 8 7 14 chain 89188 chr16 90354753 + 9443442 9444593 SVA_A 1864 - 3 1192 39935 10 0 4 642 3 0 2 39 0 58 1 0 65 3 6 50 2 0 55 3 43 39 1 0 10 2 0 114 6 45 46 chain 2322 chr16 90354753 + 9444099 9444138 SVA_A 1864 - 698 771 137274 7 0 36 23 8 6 1 chain 22596 chr16 90354753 + 9456290 9456656 THE1B 368 - 0 368 117600 54 2 4 4 1 0 76 1 0 16 8 13 5 2 0 27 1 0 72 29 29 68 chain 12709 chr16 90354753 + 9462190 9462493 L1PB1 5432 - 40 314 149420 22 1 0 21 5 3 14 1 0 5 3 1 18 27 16 11 1 0 44 22 20 49 2 0 9 2 0 3 2 0 12 0 3 7 6 0 16 chain 22035 chr16 90354753 + 9479754 9480099 THE1B 368 - 0 355 120087 31 1 0 16 16 15 63 11 19 10 8 13 32 1 0 156 chain 44002 chr16 90354753 + 9490411 9491123 L1PA15 4387 + 3669 4356 64204 144 2 0 14 4 0 18 0 1 11 18 19 14 2 0 43 1 0 171 1 0 26 1 0 54 2 1 21 4 0 10 2 1 39 20 17 40 2 0 14 6 1 28 chain 6388 chr16 90354753 + 9497366 9497482 MER5A1 166 + 8 124 182122 14 10 9 44 10 11 38 chain 35487 chr16 90354753 + 9505001 9505577 LTR8 732 + 99 698 75573 37 1 0 57 0 1 214 83 90 36 15 34 43 3 0 87 chain 52986 chr16 90354753 + 9522742 9523410 PABL_B 668 - 0 668 57023 21 5 6 354 7 6 51 1 0 118 0 1 111 chain 10446 chr16 90354753 + 9546438 9546608 L1PB2 3958 - 121 289 158510 62 6 5 17 2 0 17 4 6 48 2 1 12 chain 5915 chr16 90354753 + 9569016 9569093 L1MA8 2339 + 1991 2067 186040 20 1 0 56 chain 64115 chr16 90354753 + 9625367 9626093 L1PA3long 6157 - 0 729 50958 10 1 4 130 1 0 4 0 1 580 chain 3533 chr16 90354753 + 9652760 9652830 MADE1 96 + 8 96 214822 22 0 1 7 17 34 24 chain 7707 chr16 90354753 + 9658265 9658354 5S 121 - 32 121 172886 89 chain 26717 chr16 90354753 + 9670736 9671125 L1PA8 5853 - 1 357 97267 92 1 0 15 1 0 17 0 1 36 1 0 12 29 1 70 2 0 37 8 7 68 chain 567252 chr16 90354753 + 9678347 9684379 L1HS 6032 - 0 6032 76 6032 chain 10256 chr16 90354753 + 9710295 9710423 MER85 139 + 1 139 159346 89 0 10 39 chain 9376 chr16 90354753 + 9718556 9718671 MSTA 426 + 301 416 163675 115 chain 4737 chr16 90354753 + 9749994 9750052 MER3 215 + 55 113 198057 58 chain 35559 chr16 90354753 + 9764394 9764834 LTR7 482 - 8 482 75468 41 12 14 141 5 36 140 0 1 101 chain 278437 chr16 90354753 + 9766637 9770676 HERVH-int 3825 - 0 3825 14728 376 1 4 6 3 0 101 8 218 639 6 5 13 59 33 49 4 5 273 12 17 483 4 3 129 331 0 6 10 0 19 24 15 202 15 0 141 17 18 229 0 3 59 1 0 50 1 0 30 2 1 42 0 37 15 68 0 24 1 0 9 2 1 38 5 0 532 chain 40553 chr16 90354753 + 9770686 9771158 LTR7 482 - 8 482 68506 41 12 14 419 chain 12364 chr16 90354753 + 9774101 9774287 LTR9 672 + 413 595 150779 88 19 18 9 3 0 67 chain 21131 chr16 90354753 + 9777961 9778236 MER41E 591 + 0 276 123445 127 1 0 104 6 8 37 chain 243018 chr16 90354753 + 9778276 9780957 L1PA3long 6157 - 15 2696 16613 105 3 0 501 0 2 431 0 1 1641 chain 24635 chr16 90354753 + 9787118 9787416 AluSp 311 - 7 303 106804 172 2 0 124 chain 22371 chr16 90354753 + 9796001 9796298 AluSg7 307 + 9 293 118623 117 11 0 12 4 4 141 2 0 10 chain 24429 chr16 90354753 + 9804192 9804506 L1PREC2 3366 + 2030 2343 107924 6 2 0 157 0 4 122 3 0 24 chain 62315 chr16 90354753 + 9817799 9818520 L1PA5 6144 - 9 730 51749 329 0 1 243 1 0 148 chain 33844 chr16 90354753 + 9818522 9818932 L1PA5 6144 + 5013 5424 77860 73 3 4 334 chain 242129 chr16 90354753 + 9822708 9825354 L1PA3long 6157 - 0 2651 16665 843 0 4 207 0 1 1596 chain 4867 chr16 90354753 + 9833834 9833889 MIR 256 + 109 164 196614 55 chain 7865 chr16 90354753 + 9861262 9861356 L1PA5 6144 - 0 94 171902 94 chain 101632 chr16 90354753 + 9878322 9879446 L1PA4 6152 + 5015 6141 36362 513 0 2 611 chain 2438 chr16 90354753 + 9888805 9888908 HAL1-2a_MD 234 - 13 177 233888 14 3 100 17 3 0 5 42 9 19 chain 41015 chr16 90354753 + 9888924 9889462 MER41A 554 + 0 553 67878 24 0 1 65 1 0 70 5 1 210 11 30 152 chain 16969 chr16 90354753 + 9932092 9932388 L1PB3 3668 + 3281 3555 135669 10 1 0 99 2 1 87 20 4 18 10 8 20 8 6 21 chain 24249 chr16 90354753 + 9950211 9950500 AluY 311 + 16 301 108946 102 5 0 14 0 1 168 chain 43176 chr16 90354753 + 9969821 9970463 LTR14B 630 + 10 630 65203 223 16 0 55 7 32 71 0 9 13 42 12 11 8 0 78 2 0 116 chain 2969 chr16 90354753 + 10005850 10005888 MIR 256 + 151 189 225686 38 chain 4166 chr16 90354753 + 10049326 10049407 MADE1 96 + 0 96 205016 20 21 36 40 chain 140772 chr16 90354753 + 10055537 10057128 L1PA4 6152 + 4542 6143 26025 248 0 16 776 9 1 419 1 3 138 chain 17962 chr16 90354753 + 10057135 10057390 L1PA8 5853 - 0 250 132955 90 4 3 16 1 0 65 2 1 70 2 0 5 chain 27736 chr16 90354753 + 10068168 10068508 LTR2 463 + 122 463 93916 238 14 15 88 chain 63689 chr16 90354753 + 10074142 10074854 L1PA4 6152 + 5439 6151 51144 416 1 0 291 0 1 4 chain 27434 chr16 90354753 + 10079234 10079748 L1MA3 4352 + 3763 4260 94864 72 0 4 146 16 18 18 8 0 55 83 61 33 1 4 15 0 12 2 8 0 14 0 4 15 4 0 24 chain 28540 chr16 90354753 + 10085546 10085923 L1PA8 5853 + 5483 5853 90995 81 1 0 44 2 0 71 1 0 14 5 4 43 2 1 19 1 0 93 chain 30113 chr16 90354753 + 10093207 10093609 L1PA7 6471 + 6066 6469 84447 9 0 2 220 1 2 9 1 2 82 0 2 6 3 1 56 3 0 12 chain 3115 chr16 90354753 + 10121105 10121140 MIRc 230 - 98 133 222646 35 chain 5053 chr16 90354753 + 10129511 10129565 MER5A 189 - 135 189 194605 54 chain 3302 chr16 90354753 + 10130123 10130164 MLT1B 390 - 71 112 218935 41 chain 38697 chr16 90354753 + 10144132 10144642 MER1A 529 + 1 515 71154 10 1 0 6 2 3 371 0 3 59 7 8 54 chain 19817 chr16 90354753 + 10156759 10157028 L1PA16 3655 + 3269 3537 127759 21 2 0 108 4 5 134 chain 73961 chr16 90354753 + 10191594 10192773 L1PB1 5432 + 4261 5404 46537 173 0 1 65 1 0 4 1 2 53 0 1 9 0 3 49 1 0 12 26 7 113 0 1 58 0 2 266 28 27 7 5 0 24 1 0 9 1 0 8 24 18 46 1 0 17 1 0 44 1 0 6 26 22 19 11 8 11 2 0 24 1 0 11 0 3 20 chain 24668 chr16 90354753 + 10201952 10202316 THE1B 368 - 0 368 106624 37 17 25 108 2 0 16 11 10 27 1 0 145 chain 19810 chr16 90354753 + 10203760 10203976 L1PA3long 6157 - 0 216 127784 216 chain 19221 chr16 90354753 + 10228262 10228495 L1PA6 6164 + 5933 6162 129469 223 4 0 6 chain 4476 chr16 90354753 + 10238512 10238567 L1MA10 1535 + 940 995 201055 55 chain 11501 chr16 90354753 + 10246578 10246904 L1MC1 2226 + 1859 2149 154292 28 34 27 66 3 0 15 2 0 52 105 82 5 1 0 15 chain 22603 chr16 90354753 + 10249463 10249819 THE1B 368 - 0 368 117579 14 6 9 7 3 0 18 12 13 67 6 5 5 1 0 16 2 16 29 1 0 169 chain 33448 chr16 90354753 + 10270333 10270701 L1PA5 6144 + 5761 6129 78489 368 chain 26853 chr16 90354753 + 10280325 10281089 MLT2A2 560 + 0 558 96801 116 0 6 58 1 0 13 30 33 14 7 6 56 2 111 25 4 8 53 327 0 6 0 1 52 chain 15925 chr16 90354753 + 10284672 10284867 L1PA7 6471 + 6270 6465 138593 195 chain 19770 chr16 90354753 + 10289594 10289941 THE1B 368 - 0 368 127905 114 46 56 29 1 0 29 20 21 11 0 1 40 3 13 54 chain 20573 chr16 90354753 + 10315612 10315865 7SLRNA 320 - 4 255 125388 11 2 0 240 chain 7066 chr16 90354753 + 10325588 10325673 MLT1A 405 - 240 325 176972 85 chain 78352 chr16 90354753 + 10352525 10353491 LTR13A 966 + 0 966 44349 128 0 1 256 1 0 385 0 1 98 1 0 97 chain 26725 chr16 90354753 + 10354278 10354663 LTR7B 505 - 0 504 97240 25 2 0 26 14 13 27 0 1 43 0 1 17 0 41 59 12 81 56 0 10 104 chain 3188 chr16 90354753 + 10359242 10359281 MER45A 178 - 47 86 221177 39 chain 44677 chr16 90354753 + 10365963 10366476 MER9a1 513 - 0 513 63401 513 chain 42180 chr16 90354753 + 10371522 10371998 HERV-Fc1_LTR3 475 + 0 475 66424 326 1 0 149 chain 24546 chr16 90354753 + 10374917 10375491 PABL_A 660 - 227 572 107280 180 0 9 54 241 0 36 5 6 13 0 2 45 chain 5072 chr16 90354753 + 10376931 10376993 MER39B 650 + 563 624 194400 57 1 0 4 chain 25595 chr16 90354753 + 10377017 10377399 LTR7 482 + 0 475 101749 69 8 46 109 9 41 20 11 10 12 0 1 28 0 4 30 0 19 86 chain 222569 chr16 90354753 + 10377409 10380558 HERVH-int 3825 + 0 3118 17728 71 0 13 249 1 0 32 0 1 36 80 88 23 4 0 8 68 9 15 0 1 12 172 192 30 1 0 58 0 3 397 15 0 362 1 0 180 19 21 579 0 6 6 7 1 344 1 0 32 0 2 283 0 1 63 chain 542575 chr16 90354753 + 10380581 10386709 L1PA4 6152 - 0 6149 2411 7 3 0 2163 0 5 538 0 4 1186 5 17 787 0 4 407 1 0 1031 chain 30392 chr16 90354753 + 10388689 10389091 LTR7 482 + 0 474 83697 68 9 47 109 0 1 29 3 34 17 0 1 23 0 1 144 chain 5417 chr16 90354753 + 10390752 10391056 LTR48B 642 - 236 574 190831 24 179 216 51 34 31 16 chain 21127 chr16 90354753 + 10401057 10401310 AluY 311 + 49 300 123459 84 2 0 143 6 6 18 chain 7416 chr16 90354753 + 10409705 10409794 MER4A1_ 611 + 1 91 174679 51 0 1 38 chain 39921 chr16 90354753 + 10419110 10419968 MER41A 554 - 8 554 69433 97 347 32 217 0 3 197 chain 3825 chr16 90354753 + 10426950 10426993 MER34D 576 + 423 466 210002 43 chain 3001 chr16 90354753 + 10432561 10432592 MLT1G1 539 - 263 294 225027 31 chain 39243 chr16 90354753 + 10436078 10436561 MER41A 554 + 69 552 70397 483 chain 26129 chr16 90354753 + 10442783 10443082 AluSp 311 - 12 311 99484 299 chain 3702 chr16 90354753 + 10451026 10451075 LTR25 836 - 297 344 211908 42 2 0 5 chain 7439 chr16 90354753 + 10454996 10455150 THE1D 372 + 219 372 174524 5 1 0 33 35 36 47 6 5 27 chain 5695 chr16 90354753 + 10457049 10457120 LTR24C 604 - 0 71 188158 71 chain 6566 chr16 90354753 + 10457138 10457218 LTR24C 604 + 258 339 180738 39 0 1 41 chain 22469 chr16 90354753 + 10459769 10460068 AluYa5 310 + 12 310 118159 36 11 11 5 2 0 21 12 13 212 chain 50283 chr16 90354753 + 10473645 10474679 MER4E1 777 - 7 777 58800 205 9 23 34 10 12 32 316 8 291 0 25 26 12 16 66 11 10 22 chain 3750 chr16 90354753 + 10491730 10491776 L1MA8 2339 + 1485 1531 211132 46 chain 356054 chr16 90354753 + 10502076 10508749 L1PB1 5432 - 334 5241 11451 311 0 3 152 4 0 239 498 0 61 240 0 172 19 23 167 7 8 22 0 1 200 76 19 27 6 8 87 9 10 135 0 18 49 102 1 151 24 22 127 0 1 173 0 3 49 342 22 53 0 1 103 4 5 50 5 0 6 0 5 16 19 13 82 149 5 208 0 1 263 0 1 146 0 2 46 1 15 348 369 9 56 12 7 233 0 1 49 0 2 28 51 0 345 52 62 265 50 5 215 chain 7870 chr16 90354753 + 10505901 10505998 L1PA6 6164 - 17 112 171868 90 2 0 5 chain 28089 chr16 90354753 + 10507025 10507380 THE1A 353 + 0 353 92685 110 1 0 92 1 0 151 chain 361143 chr16 90354753 + 10512274 10516819 HERVK9-int 4720 - 0 4350 11336 19 1 0 89 0 4 716 206 0 415 0 1 145 13 11 15 1 0 5 0 1 131 4 0 369 3 4 94 0 1 47 0 5 419 0 3 118 0 1 48 0 1 14 1 0 4 0 1 404 0 1 601 0 1 218 1 0 444 chain 22410 chr16 90354753 + 10533738 10534026 AluSp 311 + 0 291 118437 53 13 15 14 0 1 208 chain 89225 chr16 90354753 + 10534614 10535704 L1PA7 6471 - 6 1102 39918 146 1 0 188 0 1 211 2 0 70 1 0 147 0 2 83 0 3 8 0 4 233 chain 12760 chr16 90354753 + 10539746 10540232 HERVI-int 3819 - 3251 3664 149211 19 1 0 7 5 4 38 25 19 39 1 0 14 10 0 7 87 63 7 1 0 32 83 60 32 21 20 11 1 0 7 9 6 9 1 0 19 chain 304817 chr16 90354753 + 10541727 10545633 L1P2 5180 - 121 3983 13215 545 0 1 96 0 5 55 0 8 118 55 5 121 2 0 398 12 15 174 0 3 281 0 4 7 1 0 7 5 3 30 19 1 47 2 0 97 0 6 242 22 26 242 1 0 82 0 4 117 2 0 859 16 12 251 chain 8623 chr16 90354753 + 10571134 10571225 L1PA3long 6157 - 2294 2385 167624 91 chain 207162 chr16 90354753 + 10571225 10573518 L1PA3long 6157 + 3886 6157 18705 169 22 0 222 4 0 1027 0 4 849 chain 20142 chr16 90354753 + 10573521 10573770 L1PA8A 6298 + 5504 5757 126703 64 0 2 96 0 2 89 chain 24399 chr16 90354753 + 10577821 10578110 AluY 311 + 5 290 108077 117 5 1 167 chain 33065 chr16 90354753 + 10579646 10580123 LTR10A 586 + 23 574 79104 14 0 1 21 0 8 7 0 1 26 24 32 7 1 0 38 1 59 210 1 0 65 1 2 50 1 0 10 chain 46910 chr16 90354753 + 10583303 10584334 HERVIP10F-int 4088 + 1294 2323 61299 9 6 0 27 127 133 13 22 23 17 44 46 35 111 106 27 16 18 29 0 3 285 1 0 20 1 0 65 2 1 83 16 15 61 2 1 12 chain 8686 chr16 90354753 + 10590126 10590231 U6 107 + 2 107 167271 105 chain 30581 chr16 90354753 + 10594603 10595412 PABL_A 660 + 2 433 83239 37 0 3 26 0 12 87 2 0 93 6 5 12 399 0 96 1 10 50 chain 12267 chr16 90354753 + 10596165 10596336 MER41B 635 + 0 174 151125 93 1 0 28 4 8 45 chain 27028 chr16 90354753 + 10598046 10598466 MER4A 717 + 0 488 96193 33 1 0 90 28 0 51 4 80 6 0 3 74 7 24 94 4 5 28 chain 38452 chr16 90354753 + 10599063 10600226 MER41A 554 + 13 554 71515 22 1 2 50 8 11 187 367 10 24 1 0 60 268 0 175 chain 3221 chr16 90354753 + 10644226 10644364 L1MC4 1079 - 215 353 220554 27 61 59 12 1 0 10 1 0 4 5 9 17 chain 3962 chr16 90354753 + 10677281 10677324 MLT1H2 457 + 89 132 207962 43 chain 5393 chr16 90354753 + 10686552 10686663 MER58A 224 - 11 173 191061 37 36 87 38 chain 22878 chr16 90354753 + 10702116 10702419 MER1A 529 + 223 529 116196 234 2 0 5 5 9 11 0 1 46 chain 26032 chr16 90354753 + 10729949 10730245 AluSq10 312 + 0 296 99895 296 chain 7885 chr16 90354753 + 10770137 10770312 MER20 218 - 62 218 171771 19 9 0 6 1 0 44 5 3 4 0 1 17 1 0 13 13 0 9 13 19 21 chain 39782 chr16 90354753 + 10774437 10774876 L1PA3long 6157 + 5718 6157 69653 439 chain 10093 chr16 90354753 + 10781703 10781912 L1MA3 4352 - 12 207 160115 9 3 0 3 1 0 14 5 4 22 1 0 4 7 6 18 2 0 24 4 0 18 7 6 67 chain 45461 chr16 90354753 + 10870445 10870989 MER41A 554 - 8 554 62537 118 0 1 299 0 1 127 chain 33152 chr16 90354753 + 10873998 10874420 PABL_A 660 - 224 659 78985 203 1 0 9 8 9 16 0 13 185 chain 15284 chr16 90354753 + 10876051 10876284 MER83 447 + 157 403 140526 24 2 1 143 0 1 4 19 32 41 chain 16368 chr16 90354753 + 10879605 10879800 LTR14 556 + 360 556 137289 84 1 2 110 chain 17209 chr16 90354753 + 10879869 10880076 MER4A1 472 - 256 463 135014 207 chain 44093 chr16 90354753 + 10882352 10882900 LTR14 556 - 0 556 64101 110 1 2 91 2 1 30 9 17 305 chain 56023 chr16 90354753 + 10883214 10884635 MER4E1 777 - 7 777 55109 189 325 7 28 28 9 19 1 0 6 0 1 26 0 4 191 0 1 98 319 0 125 7 9 33 2 0 24 chain 17093 chr16 90354753 + 10884642 10884931 MER4D1 891 - 577 891 135338 44 52 80 77 4 1 112 chain 12165 chr16 90354753 + 10885262 10885465 LTR9 672 + 68 248 151551 29 1 0 70 0 1 28 1 0 5 23 0 8 4 5 34 chain 13510 chr16 90354753 + 10910585 10910741 L1PA4 6152 + 5997 6152 146323 8 1 0 147 chain 89172 chr16 90354753 + 10923305 10924342 LTR5A 1029 - 0 1029 39938 148 7 0 734 1 0 147 chain 4973 chr16 90354753 + 10926306 10926389 MLT1C 463 - 276 352 195439 53 18 11 12 chain 3417 chr16 90354753 + 10953162 10953218 HAL1-2a_MD 234 - 94 177 216821 12 2 11 16 0 18 26 chain 9899 chr16 90354753 + 10969732 10969844 AluYk4 311 + 187 299 161072 112 chain 21644 chr16 90354753 + 11014733 11015012 AluSp 311 - 11 300 121598 57 8 16 9 0 1 176 0 1 29 chain 3291 chr16 90354753 + 11016620 11016694 MADE2 80 - 0 74 219158 23 11 0 9 9 20 22 chain 7011 chr16 90354753 + 11041501 11041583 MER81 114 - 2 85 177388 29 0 1 53 chain 22789 chr16 90354753 + 11060412 11060752 THE1C 375 - 33 375 116637 144 11 5 11 0 3 33 0 4 51 13 0 8 1 15 68 chain 6368 chr16 90354753 + 11139322 11139404 MLT1A0 366 - 260 342 182262 82 chain 3987 chr16 90354753 + 11319925 11319973 MIR3 191 + 70 118 207571 48 chain 26076 chr16 90354753 + 11321281 11321595 AluSp 311 - 0 310 99719 158 0 3 8 3 0 10 4 0 131 chain 3996 chr16 90354753 + 11325717 11325798 MER20 218 + 49 127 207440 17 25 22 39 chain 11912 chr16 90354753 + 11360405 11360559 L1PA8 5853 + 5701 5853 152542 38 3 2 19 1 0 93 chain 3891 chr16 90354753 + 11400197 11400247 L1MB3 1562 + 1129 1226 208996 40 0 47 10 chain 12920 chr16 90354753 + 11412066 11412209 L1PA5 6144 + 5998 6141 148560 143 chain 4077 chr16 90354753 + 11428138 11428184 L1MB5 1630 - 721 767 206229 46 chain 112292 chr16 90354753 + 11429279 11430596 SVA_D 2077 - 337 2073 33593 301 0 1 5 0 176 33 1 0 10 1 0 6 0 78 92 0 2 84 0 36 13 2 0 14 0 120 12 4 0 24 5 8 670 0 1 9 0 12 5 2 0 24 chain 19401 chr16 90354753 + 11437869 11438109 AluY 311 + 52 289 128943 70 8 5 162 chain 8790 chr16 90354753 + 11469475 11469585 L1MB2 1706 - 686 796 166700 110 chain 36769 chr16 90354753 + 11512079 11512542 MER41A 554 + 0 554 73848 86 6 7 106 0 1 192 0 89 73 chain 126531 chr16 90354753 + 11513053 11514452 L1PA3long 6157 + 4743 6152 28935 288 1 0 257 0 4 12 0 4 832 0 3 9 chain 17799 chr16 90354753 + 11521794 11522026 MER41A 554 - 0 235 133411 123 0 1 17 0 2 92 chain 2888 chr16 90354753 + 11522880 11522913 L1MC4 1079 + 285 318 227229 33 chain 11446 chr16 90354753 + 11569029 11569184 L1PA8 5853 + 5700 5853 154511 44 6 5 11 2 1 92 chain 24008 chr16 90354753 + 11673059 11673315 AluYb8 318 + 34 290 110286 256 chain 9671 chr16 90354753 + 11673877 11674050 Tigger4a 237 + 43 215 162241 60 7 0 12 1 0 5 15 23 14 1 2 21 2 0 35 chain 4981 chr16 90354753 + 11700325 11700397 Tigger1 2417 + 586 669 195354 27 3 14 42 chain 4859 chr16 90354753 + 11708003 11708076 MLT1C 463 - 33 108 196682 32 7 9 34 chain 24520 chr16 90354753 + 11714918 11715208 AluSp 311 - 15 300 107438 56 5 0 229 chain 40303 chr16 90354753 + 11727192 11727742 MER41A 554 + 0 554 68876 87 5 6 48 11 12 244 4 0 33 0 1 38 7 12 73 chain 2888 chr16 90354753 + 11731046 11731079 LTR9 672 - 639 672 227226 33 chain 6262 chr16 90354753 + 11800704 11800879 MER8 282 + 0 220 183068 62 17 61 13 57 58 26 chain 4568 chr16 90354753 + 11904987 11905041 MER51B 395 - 341 395 200028 54 chain 13315 chr16 90354753 + 11954308 11954509 Tigger3b 1229 + 572 777 147034 49 0 3 52 2 1 25 3 7 61 2 0 7 chain 24386 chr16 90354753 + 11983375 11983662 AluSp 311 - 23 311 108156 131 0 1 156 chain 24537 chr16 90354753 + 12028133 12028433 AluSp 311 + 5 305 107326 300 chain 22742 chr16 90354753 + 12032607 12032891 AluSg4 309 - 13 298 116861 118 4 5 162 chain 27980 chr16 90354753 + 12042343 12042652 AluYa5 310 + 2 310 93070 130 1 0 178 chain 5004 chr16 90354753 + 12065655 12065712 MER4D1 891 - 247 304 195102 57 chain 29339 chr16 90354753 + 12068998 12069303 AluYa5 310 - 5 310 87352 305 chain 25071 chr16 90354753 + 12102126 12102425 AluSp 311 - 12 311 104451 299 chain 548283 chr16 90354753 + 12164047 12170160 L1PA3long 6157 - 8 6157 1665 6 0 3 630 0 5 191 0 4 609 1 0 66 1 0 6 0 1 264 0 4 1273 3 0 297 0 4 467 1 0 467 0 5 604 0 1 326 0 1 775 0 14 126 chain 71799 chr16 90354753 + 12195638 12196472 L1PA7 6471 - 14 848 47564 834 chain 103457 chr16 90354753 + 12196472 12197694 L1PA7 6471 + 4363 5605 35880 303 0 8 275 1 0 201 9 21 24 1 2 408 chain 4429 chr16 90354753 + 12202650 12202705 MSTC 436 - 12 67 201592 55 chain 23641 chr16 90354753 + 12236857 12237153 AluSp 311 - 15 311 112349 168 2 1 14 2 3 110 chain 3238 chr16 90354753 + 12237700 12237769 MER5B 177 + 31 101 220274 21 21 22 27 chain 3210 chr16 90354753 + 12267268 12267306 MER58A 224 - 137 175 220746 38 chain 5071 chr16 90354753 + 12270413 12270473 MER2 342 + 152 212 194402 60 chain 36152 chr16 90354753 + 12275029 12275470 MER4A1 472 - 0 471 74707 66 0 2 138 0 1 19 0 27 218 chain 37729 chr16 90354753 + 12277487 12278010 MER41A 554 + 0 534 72519 63 0 1 182 14 10 67 7 17 4 1 0 122 0 5 63 chain 37286 chr16 90354753 + 12445956 12446372 L1PA4 6152 + 5724 6140 73104 416 chain 43920 chr16 90354753 + 12477645 12478616 L1MA2 4263 - 43 878 64307 14 5 3 14 196 75 9 1 0 21 34 28 71 41 39 105 0 1 34 3 0 114 27 30 69 13 9 19 4 3 177 chain 27839 chr16 90354753 + 12557151 12557521 THE1B 368 - 0 368 93564 74 1 0 97 1 3 19 13 12 150 2 0 13 chain 185743 chr16 90354753 + 12585387 12587454 L1PA4 6152 - 0 2063 20437 1457 1 0 197 9 6 403 chain 436352 chr16 90354753 + 12685629 12691365 L1PA4 6152 + 8 5876 9156 64 3 5 229 31 42 24 7 6 196 1 4 196 0 2 25 1 0 144 0 10 37 0 3 45 0 1 35 5 8 59 0 2 57 8 7 4 0 1 18 0 2 8 15 14 141 35 37 9 0 1 8 12 6 23 0 2 332 0 2 27 1 6 250 0 3 249 0 2 74 0 3 70 28 34 8 0 2 48 0 4 84 4 6 74 0 17 5 0 2 167 0 2 128 4 1 27 0 3 47 0 2 21 0 2 64 0 2 8 0 7 78 7 9 8 9 0 317 3 8 13 1 0 191 0 3 47 8 10 312 0 3 85 0 6 41 0 2 62 2 0 26 1 3 47 0 4 480 1 0 257 0 4 16 0 4 54 0 3 6 12 12 30 0 3 76 1 4 230 3 4 152 chain 445648 chr16 90354753 + 12697669 12703621 L1PA4 6152 + 0 6136 8883 71 6 4 43 46 60 426 2 0 68 8 15 86 0 2 21 0 4 148 0 3 35 0 9 25 1 0 34 6 7 23 3 1 58 0 2 16 0 3 8 0 4 79 0 4 99 5 4 43 2 18 17 6 5 290 0 2 62 0 2 48 0 5 59 0 5 187 1 0 26 0 3 9 0 2 32 0 1 82 1 0 309 1 8 6 0 2 104 0 5 69 4 6 32 1 5 19 0 3 88 1 0 4 0 1 31 0 2 112 1 5 52 3 7 26 0 2 13 0 6 6 28 5 21 5 1 10 13 16 12 0 14 24 1 0 151 0 3 48 1 5 185 0 4 96 0 1 67 3 6 22 2 6 52 3 2 4 0 1 22 0 3 151 0 2 188 1 0 46 0 8 127 0 2 148 1 4 59 0 1 90 0 2 32 22 22 30 0 4 101 0 4 138 0 1 156 0 3 18 3 7 43 0 3 20 3 5 20 0 3 9 0 4 37 0 2 72 0 2 104 1 0 58 13 15 298 0 1 34 7 10 88 chain 29820 chr16 90354753 + 12705004 12705455 MER41A 554 + 0 469 85376 63 6 7 17 14 16 18 21 32 201 1 4 72 0 1 38 chain 46552 chr16 90354753 + 12785293 12785832 L1PA4 6152 + 5614 6152 61556 228 0 1 166 1 0 133 1 0 10 chain 3031 chr16 90354753 + 12789074 12789113 MER57B2 428 + 0 39 224367 39 chain 6070 chr16 90354753 + 12809749 12809825 MER30B 195 + 119 195 184655 76 chain 22960 chr16 90354753 + 12813005 12813266 AluYk4 311 + 39 300 115807 261 chain 3395 chr16 90354753 + 12826591 12826674 HAL1 992 + 426 500 217170 23 17 16 25 8 0 10 chain 19349 chr16 90354753 + 12842313 12843880 Tigger1 2417 - 1 958 129076 51 0 4 92 1290 676 134 chain 9842 chr16 90354753 + 12845130 12845255 Tigger1 2417 + 591 717 161385 6 0 1 119 chain 3570 chr16 90354753 + 12851070 12851112 MER81 114 - 32 73 214131 29 1 0 12 chain 2933 chr16 90354753 + 12869287 12869323 Tigger4b 360 - 1 37 226482 36 chain 5637 chr16 90354753 + 12870803 12870920 THE1B 368 + 249 368 188689 41 41 43 35 chain 26563 chr16 90354753 + 12884919 12885274 L1PA8 5853 - 0 349 97795 81 0 1 11 1 0 19 2 1 45 9 8 8 1 0 71 2 0 44 1 0 60 chain 23650 chr16 90354753 + 12886426 12886774 THE1B 368 + 0 353 112312 169 1 0 29 0 3 13 0 4 6 22 20 36 7 8 65 chain 23405 chr16 90354753 + 12901329 12902462 MER4A1_ 611 + 0 595 113621 91 789 252 158 0 1 20 20 18 55 chain 31166 chr16 90354753 + 12905739 12906186 MER51B 395 - 7 395 82226 58 0 5 80 1 0 148 64 1 96 chain 15540 chr16 90354753 + 12907136 12907361 MER4A 717 + 22 328 139767 97 0 1 8 3 2 44 0 83 12 8 6 53 chain 14523 chr16 90354753 + 12916296 12916558 THE1B 368 - 0 265 142815 107 63 67 21 2 1 69 chain 9290 chr16 90354753 + 12932429 12932710 MLT1C-int 1263 + 589 805 164111 58 45 47 55 96 29 27 chain 9923 chr16 90354753 + 12964699 12964822 L1P5 443 - 112 235 160968 123 chain 15702 chr16 90354753 + 12980644 12981749 L1PB1 5432 - 5 507 139259 5 2 0 15 31 22 15 1 0 22 836 245 178 chain 3513 chr16 90354753 + 13007008 13007048 MADE1 96 + 1 41 215165 40 chain 12728 chr16 90354753 + 13014035 13014175 L1PA5 6144 + 5991 6131 149341 140 chain 24286 chr16 90354753 + 13025318 13025644 L1PA16 3655 - 77 437 108736 168 1 0 120 4 39 33 chain 48817 chr16 90354753 + 13060870 13061427 L1PA4 6152 + 5596 6152 59863 45 5 4 507 chain 3659 chr16 90354753 + 13107985 13108026 MIR 256 - 111 152 212582 41 chain 69470 chr16 90354753 + 13116883 13117670 L1PA6 6164 - 4 791 48620 787 chain 22091 chr16 90354753 + 13122180 13122541 THE1B 368 - 0 368 119834 39 0 1 20 1 0 65 11 19 10 0 1 4 1 0 4 0 5 7 24 17 59 11 12 105 chain 27535 chr16 90354753 + 13125877 13126272 L1PA8 5853 - 0 389 94552 92 2 1 19 2 1 40 0 1 11 16 13 67 2 0 46 1 0 37 0 1 60 chain 4998 chr16 90354753 + 13167309 13167386 MER5A 189 + 14 90 195157 24 6 0 40 0 5 7 chain 517737 chr16 90354753 + 13180707 13186812 L1PA6 6164 - 2 6164 5396 6 4 0 23 1 37 260 18 4 140 0 2 522 0 5 501 1 9 279 5 9 414 0 2 133 0 8 618 5 6 783 0 1 193 0 7 196 4 0 15 5 6 1061 0 1 295 0 1 58 1 0 47 0 2 256 1 0 24 0 2 236 chain 39461 chr16 90354753 + 13209048 13209538 MER9a1 513 - 0 513 70072 147 0 1 98 1 23 23 0 2 5 8 6 208 chain 23791 chr16 90354753 + 13260922 13261228 AluSp 311 - 5 311 111523 156 3 0 5 4 7 138 chain 4327 chr16 90354753 + 13295008 13295059 MER58A 224 + 45 96 202871 51 chain 44214 chr16 90354753 + 13324458 13325004 MER41A 554 - 0 554 63929 110 0 1 302 0 7 134 chain 6322 chr16 90354753 + 13326217 13326293 L1PA8 5853 + 5773 5853 182625 36 0 4 40 chain 57001 chr16 90354753 + 13326331 13327101 MER4E1 777 - 8 777 54530 5 0 1 81 0 1 123 19 15 56 0 4 193 0 1 52 11 7 171 0 1 35 1 0 23 chain 92820 chr16 90354753 + 13332709 13333722 L1PA3long 6157 - 15 1030 38704 244 1 0 533 0 3 235 chain 18146 chr16 90354753 + 13347255 13347615 THE1B 368 - 0 368 132470 14 5 6 19 23 24 55 39 41 8 0 3 29 1 0 35 25 27 107 chain 123081 chr16 90354753 + 13352763 13354667 THE1A-int 1579 - 0 1579 30016 122 0 2 438 1 2 4 1 0 418 0 1 95 330 0 202 7 9 286 chain 26063 chr16 90354753 + 13354667 13355009 THE1A 353 - 0 339 99779 155 2 0 84 6 5 95 chain 24105 chr16 90354753 + 13367164 13367503 THE1B 368 + 0 350 109720 41 8 23 105 12 11 124 2 0 41 1 0 5 chain 260977 chr16 90354753 + 13369806 13373309 L1PB1 5432 - 12 3517 15644 16 1 0 13 1 0 21 1 0 22 2 0 16 8 5 19 23 12 16 0 1 42 9 15 53 2 0 11 39 33 11 1 0 11 3 0 477 3 0 53 0 1 44 0 2 570 3 0 186 0 1 4 3 2 35 1 0 125 8 14 1134 0 5 161 0 20 12 5 4 338 chain 2736 chr16 90354753 + 13395143 13395210 MER5A1 166 - 5 70 229670 6 1 0 15 18 17 27 chain 6059 chr16 90354753 + 13400432 13400521 MLT1F1 559 - 167 254 184754 54 0 4 20 6 0 9 chain 5064 chr16 90354753 + 13405977 13406137 MER58A 224 - 17 178 194505 43 86 87 31 chain 2821 chr16 90354753 + 13417281 13417317 MSTB 430 + 2 37 228434 23 1 0 12 chain 23616 chr16 90354753 + 13419553 13419923 L1PA8 5853 + 5489 5853 112492 30 1 2 35 7 6 46 3 1 21 4 5 44 1 0 11 0 3 5 9 4 38 2 1 19 1 0 93 chain 21627 chr16 90354753 + 13431017 13431378 THE1B 368 + 0 366 121666 106 10 11 52 1 0 6 62 68 89 1 0 34 chain 21383 chr16 90354753 + 13431514 13431884 MSTA 426 + 2 416 122572 98 22 47 59 4 0 10 2 0 5 1 8 7 3 0 20 11 12 25 4 24 99 chain 4341 chr16 90354753 + 13440052 13440101 L1PB4 2604 - 88 137 202703 49 chain 36377 chr16 90354753 + 13446439 13446873 LTR7 482 - 0 482 74389 125 10 1 61 0 31 212 5 31 21 chain 277249 chr16 90354753 + 13448134 13451430 HERVH-int 3825 - 9 3825 14794 173 0 7 305 1 211 25 0 3 31 6 8 1337 4 31 17 0 1 124 0 1 100 0 1 218 15 0 305 0 3 133 0 3 14 0 2 7 0 1 56 2 1 38 6 56 19 1 119 26 0 107 333 chain 44139 chr16 90354753 + 13451432 13451918 LTR7 482 - 0 482 64029 115 0 1 310 5 0 56 chain 122822 chr16 90354753 + 13468028 13469464 L1PA6 6164 - 2 1434 30106 143 15 16 680 5 0 593 chain 35295 chr16 90354753 + 13474539 13474962 L1PA7 6471 - 10 435 75803 217 0 2 206 chain 9282 chr16 90354753 + 13479632 13479808 L1MD2 1676 + 1312 1492 164158 11 1 0 103 47 52 14 chain 32363 chr16 90354753 + 13578895 13579304 L1PA8 5853 - 0 403 80251 93 1 0 67 1 0 14 1 0 71 2 0 44 1 0 114 chain 5759 chr16 90354753 + 13581520 13581677 MER2 342 - 127 305 187557 35 6 7 41 58 78 17 chain 19136 chr16 90354753 + 13583291 13583597 THE1B 368 + 0 341 129721 106 9 11 46 41 74 104 chain 127617 chr16 90354753 + 13606113 13607827 L1PA8 5853 + 4092 5830 28667 130 11 15 133 10 6 551 1 0 4 0 2 69 12 10 6 0 1 120 0 20 161 0 1 32 6 7 194 19 18 36 12 10 61 1 0 8 3 11 42 2 1 16 4 3 70 chain 21927 chr16 90354753 + 13650273 13650538 AluY 311 + 38 301 120512 83 3 0 5 0 1 174 chain 6032 chr16 90354753 + 13650675 13650876 MER2 342 + 135 342 184951 13 11 12 55 80 84 21 5 6 16 chain 33159 chr16 90354753 + 13659569 13659935 L1PA4 6152 + 5785 6151 78969 366 chain 8723 chr16 90354753 + 13702416 13702540 AluSp 311 + 154 292 167075 17 15 29 92 chain 38998 chr16 90354753 + 13703897 13704554 MER4A 717 + 4 717 70748 16 6 5 7 0 1 12 0 1 7 15 17 45 6 7 5 1 0 127 0 7 7 0 5 87 1 47 86 53 47 103 10 11 50 0 1 4 1 0 8 chain 9289 chr16 90354753 + 13720465 13720703 L1MB1 2102 + 1754 2003 164113 76 111 122 51 chain 39563 chr16 90354753 + 13726309 13726818 MER41A 554 - 8 520 69946 45 8 4 22 1 6 38 0 1 230 0 1 165 chain 48399 chr16 90354753 + 13727483 13728148 PABL_B 668 + 0 668 60185 42 10 13 368 12 18 43 0 2 98 2 0 29 12 8 27 2 0 20 chain 4177 chr16 90354753 + 13735017 13735073 MER20 218 + 89 138 204876 37 7 0 12 chain 23478 chr16 90354753 + 13740889 13741158 AluYk4 311 + 38 307 113227 269 chain 24480 chr16 90354753 + 13742798 13743130 L1PA8 5853 - 6 331 107656 87 1 0 17 1 0 55 2 1 8 2 1 70 2 0 44 1 0 42 chain 18651 chr16 90354753 + 13743724 13744062 L1PA15 4387 - 21 340 131086 11 1 0 27 21 14 44 6 3 50 14 9 23 2 1 54 1 0 26 1 0 57 chain 15105 chr16 90354753 + 13754734 13755071 THE1D 372 + 0 329 141014 15 0 2 39 35 26 18 9 5 61 24 27 13 9 10 7 4 0 54 12 14 25 1 2 11 chain 10296 chr16 90354753 + 13761110 13761299 L1MA2 4263 - 150 329 159150 8 1 0 30 30 23 86 1 0 9 2 1 22 chain 15061 chr16 90354753 + 13770223 13770579 L1PA13 3608 + 126 454 141136 12 3 0 25 5 16 11 8 0 11 15 0 81 0 1 8 2 0 20 27 29 10 0 1 43 6 7 8 12 0 7 1 0 12 1 0 17 2 0 9 chain 10213 chr16 90354753 + 13772432 13772569 L1PB3 3668 - 1588 1728 159554 94 1 2 30 0 2 12 chain 35620 chr16 90354753 + 13786770 13787194 LTR3 431 - 7 431 75385 78 0 1 80 1 0 265 chain 6874 chr16 90354753 + 13810543 13810646 MER65A 464 + 364 464 178407 14 9 5 36 0 1 44 chain 45749 chr16 90354753 + 13819464 13820075 MER41B 635 + 0 611 62276 125 1 2 329 17 16 139 chain 13560 chr16 90354753 + 13829588 13829765 L1PA8 5853 - 0 174 146130 92 2 1 19 2 1 51 1 0 10 chain 75827 chr16 90354753 + 13833699 13834648 LTR13 1007 + 0 956 45585 71 2 0 310 4 5 299 4 10 46 1 2 72 0 1 140 chain 5989 chr16 90354753 + 13834707 13834777 MER4A1 472 + 402 472 185345 70 chain 22413 chr16 90354753 + 13865662 13865929 L1PA5 6144 - 6 272 118421 161 2 1 104 chain 7206 chr16 90354753 + 13877752 13877843 MLT1A0 366 - 15 107 176030 76 0 1 15 chain 7741 chr16 90354753 + 13884243 13884399 MER44B 551 - 39 195 172656 22 41 45 7 4 0 82 chain 23989 chr16 90354753 + 13890938 13891302 L1PA16 3655 + 3226 3583 110388 65 30 28 97 9 7 155 3 0 5 chain 6995 chr16 90354753 + 13921731 13921877 L1PA15 4387 - 21 165 177500 10 1 0 28 2 0 13 3 1 22 26 29 41 chain 17764 chr16 90354753 + 13935466 13935653 L1PA2 6032 - 0 187 133533 187 chain 12171 chr16 90354753 + 13935653 13935782 L1PA2 6032 + 5693 5822 151533 129 chain 25857 chr16 90354753 + 13937929 13938335 MER1A 529 - 5 414 100616 55 10 13 113 7 6 46 0 1 47 41 29 7 0 12 80 chain 3316 chr16 90354753 + 13939516 13939557 MIR 256 - 84 125 218652 41 chain 28927 chr16 90354753 + 13944889 13945198 AluYf4 310 + 0 309 89341 309 chain 61491 chr16 90354753 + 13968623 13969376 MER4E1 777 + 0 769 52120 23 8 9 40 0 1 347 0 1 60 0 4 57 1 9 130 0 1 87 chain 3076 chr16 90354753 + 13970216 13970270 MIRb 242 - 63 120 223381 23 10 13 21 chain 88812 chr16 90354753 + 13982957 13984068 SVA_B 1603 + 44 1601 40079 22 0 5 130 0 1 252 0 39 27 38 1 29 0 80 64 12 370 110 0 2 419 2 0 6 chain 4693 chr16 90354753 + 13988983 13989077 MER58A 224 - 11 104 198604 36 22 21 36 chain 86089 chr16 90354753 + 13998563 13999565 LTR13 1007 + 0 1007 41126 171 10 15 160 1 0 636 1 2 23 chain 24523 chr16 90354753 + 14007621 14008057 MER66B 489 - 0 449 107426 23 1 0 60 70 73 33 6 15 73 0 1 13 18 19 139 chain 40454 chr16 90354753 + 14056122 14056641 L1MA3 4352 - 285 807 68655 489 0 3 30 chain 74251 chr16 90354753 + 14058063 14059110 MER11C 1089 - 26 1089 46387 25 0 1 117 1 0 45 42 43 94 0 1 38 1 0 4 1 5 91 37 36 178 1 0 68 2 4 5 0 2 50 0 9 247 chain 23208 chr16 90354753 + 14065623 14065925 AluYk4 311 + 0 283 114651 123 22 3 157 chain 14927 chr16 90354753 + 14085068 14085361 L1PB1 5432 + 5162 5430 141553 5 0 2 51 2 1 11 5 4 41 4 3 16 3 0 15 9 0 15 13 8 12 2 0 24 1 0 23 1 0 13 1 0 16 1 0 4 1 0 4 chain 3518 chr16 90354753 + 14113101 14113204 ERVL-B4-int 2334 - 648 744 215099 38 49 42 16 chain 31816 chr16 90354753 + 14115302 14115823 L1PB1 5432 - 10 501 81134 18 1 0 13 1 0 21 1 0 22 2 0 16 1 0 5 2 0 30 14 1 16 1 0 44 1 0 15 2 1 53 2 0 8 2 0 3 2 0 9 1 0 13 1 0 20 3 0 5 1 6 119 10 10 43 chain 15754 chr16 90354753 + 14129599 14129945 L1PB1 5432 - 10 318 139097 4 1 0 10 5 4 13 7 1 20 1 0 24 2 0 15 1 0 4 2 0 30 37 23 37 1 0 15 3 2 52 18 12 10 1 0 12 1 0 20 chain 12830 chr16 90354753 + 14131897 14132078 MLT1B 390 - 21 210 148928 10 0 7 110 14 15 47 chain 10864 chr16 90354753 + 14135816 14135980 L1MB2 1706 - 474 639 156726 81 18 19 65 chain 33716 chr16 90354753 + 14141710 14142097 THE1B-int 1605 - 11 398 78067 387 chain 124774 chr16 90354753 + 14157643 14159442 L1PA15 4387 - 40 1831 29456 18 5 0 14 3 1 43 7 4 50 1 0 9 4 0 23 1 0 55 1 0 25 3 2 170 1 0 41 7 5 71 1 3 24 0 1 132 1 7 94 1 3 29 0 2 171 2 0 3 3 0 11 14 19 58 2 3 84 6 5 376 1 2 6 1 0 9 1 3 20 13 10 42 0 1 4 1 0 24 0 1 113 chain 213666 chr16 90354753 + 14216145 14218694 L1PA7 6471 - 3 2575 18247 361 2 0 14 4 0 472 1 0 163 0 10 48 0 1 206 8 0 10 0 19 91 10 12 392 0 4 549 0 4 131 2 0 85 chain 23339 chr16 90354753 + 14224549 14224907 THE1C 375 - 0 375 113987 26 1 0 41 6 26 24 2 0 18 0 1 21 32 34 59 3 0 125 chain 28927 chr16 90354753 + 14253504 14253812 AluYa5 310 + 0 307 89340 132 1 0 175 chain 3644 chr16 90354753 + 14298240 14298280 U7 62 - 22 62 212890 40 chain 14079 chr16 90354753 + 14316198 14316395 MER30 238 + 30 238 144296 68 12 0 12 1 24 104 chain 4468 chr16 90354753 + 14318157 14318207 Tigger3c 601 - 71 121 201141 50 chain 22658 chr16 90354753 + 14318759 14319030 AluSp 311 + 0 269 117286 37 2 0 232 chain 115671 chr16 90354753 + 14323890 14325150 L1PA3long 6157 + 4897 6157 32568 1260 chain 6875 chr16 90354753 + 14379749 14379821 tRNA-Thr-ACG 72 + 0 72 178400 72 chain 28494 chr16 90354753 + 14461654 14461956 AluYa8 305 + 0 302 91212 302 chain 23497 chr16 90354753 + 14497086 14497378 AluSx 319 + 10 312 113141 43 0 8 176 4 6 69 chain 25781 chr16 90354753 + 14510845 14511197 THE1A 353 + 0 353 100960 109 2 1 92 1 0 7 9 12 132 chain 4399 chr16 90354753 + 14526873 14526922 Tigger3b 1229 - 10 59 201949 49 chain 4868 chr16 90354753 + 14565585 14565663 L1MB2 1706 - 191 268 196609 21 7 6 50 chain 3074 chr16 90354753 + 14581455 14581487 MER66C 541 - 135 167 223485 32 chain 2976 chr16 90354753 + 14611011 14611049 MLT1H 522 + 56 94 225502 38 chain 108803 chr16 90354753 + 14626034 14627262 SVA_D 2077 - 0 2025 34485 338 0 10 183 0 389 119 0 2 81 0 396 507 chain 21329 chr16 90354753 + 14640697 14640973 AluSg 306 + 22 304 122762 24 6 12 246 chain 3886 chr16 90354753 + 14655167 14655243 MER5A 189 + 36 113 209080 38 20 21 18 chain 110328 chr16 90354753 + 14667792 14669640 THE1B-int 1605 + 0 1605 34114 13 33 31 238 10 12 136 2 27 61 304 1 21 0 1 39 0 13 112 1 33 437 8 7 147 30 3 7 0 14 108 2 0 57 0 5 82 chain 24876 chr16 90354753 + 14691281 14691569 AluY 311 + 10 298 105475 288 chain 25842 chr16 90354753 + 14706888 14707187 AluSp 311 + 4 303 100688 299 chain 77590 chr16 90354753 + 14730003 14730963 LTR5_Hs 974 - 0 974 44695 77 0 6 20 6 4 33 8 15 67 3 5 461 0 1 285 chain 35332 chr16 90354753 + 14756622 14757080 LTR2 463 - 2 463 75760 86 12 13 98 1 0 33 0 5 11 5 0 157 0 3 55 chain 92865 chr16 90354753 + 14767559 14769515 L1PB3 3668 + 1666 3031 38696 106 13 10 134 3 7 92 1 16 85 20 1 263 305 33 14 3 4 4 0 1 104 342 37 90 1 0 21 12 0 141 0 1 158 0 2 15 10 7 19 chain 39463 chr16 90354753 + 14789641 14790168 MER57-int 2662 - 1293 1897 70065 76 1 66 102 0 1 28 4 0 94 0 8 33 6 15 130 2 0 51 chain 22796 chr16 90354753 + 14790171 14790457 AluSp 311 - 15 297 116596 10 2 0 154 2 0 118 chain 39463 chr16 90354753 + 14828759 14829286 MER57-int 2662 - 1293 1897 70064 76 1 66 102 0 1 28 4 0 94 0 8 33 6 15 130 2 0 51 chain 22796 chr16 90354753 + 14829289 14829575 AluSp 311 - 15 297 116595 10 2 0 154 2 0 118 chain 3665 chr16 90354753 + 14879408 14879490 MER20 218 + 54 134 212473 21 28 26 33 chain 43415 chr16 90354753 + 14890673 14891219 MLT2A2 560 - 0 560 64916 143 0 11 199 10 13 194 chain 14470 chr16 90354753 + 14905456 14905832 MLT1B 390 - 5 359 142986 120 174 153 57 1 0 24 chain 29692 chr16 90354753 + 14910897 14911781 L1MA3 4352 - 42 613 85861 22 1 0 5 2 1 23 371 53 26 1 0 43 86 76 105 0 18 199 chain 29568 chr16 90354753 + 14930551 14930861 AluYb8 318 - 8 318 86342 310 chain 6010 chr16 90354753 + 14986404 14986478 L1PA2 6032 + 5958 6032 185134 74 chain 251157 chr16 90354753 + 15087011 15089858 L1PA4 6152 - 11 2862 16164 839 0 4 1203 1 0 179 1 2 624 chain 3470 chr16 90354753 + 15146050 15146104 MER58B 340 - 106 170 215826 19 6 16 29 chain 9530 chr16 90354753 + 15150353 15150460 AluJr 308 + 3 110 162924 107 chain 26874 chr16 90354753 + 15177576 15177872 AluSp 311 - 15 311 96724 296 chain 25358 chr16 90354753 + 15189958 15190265 AluSz 310 - 3 310 102898 307 chain 23346 chr16 90354753 + 15191219 15191516 AluY 311 + 20 300 113944 113 20 3 164 chain 21573 chr16 90354753 + 15243927 15244200 AluY 311 + 8 285 121871 124 0 1 22 10 13 117 chain 36614 chr16 90354753 + 15261016 15261461 L1PA7 6471 + 6025 6468 74079 37 0 1 396 3 0 9 chain 22031 chr16 90354753 + 15261468 15261760 AluSp 311 + 0 301 120102 63 0 18 51 2 0 162 7 0 7 chain 23691 chr16 90354753 + 15325452 15325758 AluY 311 + 0 289 112074 133 23 6 150 chain 22004 chr16 90354753 + 15328812 15329098 AluSp 311 + 14 291 120209 18 1 0 136 8 0 123 chain 15332 chr16 90354753 + 15332821 15333112 THE1B 368 - 72 368 140387 56 1 0 8 1 0 18 0 4 10 1 0 4 62 66 19 0 3 6 3 0 102 chain 13067 chr16 90354753 + 15333941 15334154 L1PA8 5853 - 6 215 147963 87 1 0 17 7 6 45 16 14 40 chain 5577 chr16 90354753 + 15340748 15340826 MLT1A0 366 - 252 327 189310 46 4 0 20 0 1 8 chain 53133 chr16 90354753 + 15343624 15344434 L1PB1 5432 + 4655 5423 56938 266 0 4 178 1 2 9 22 5 17 1 0 11 1 0 11 5 1 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 2 0 11 8 0 16 2 0 5 1 0 14 6 4 20 1 0 21 6 5 8 1 0 19 chain 24498 chr16 90354753 + 15346725 15347074 THE1B 368 - 0 368 107554 49 12 12 42 0 1 91 5 4 27 0 4 73 6 21 44 chain 26213 chr16 90354753 + 15370103 15370441 THE1B 368 - 0 343 99153 169 1 3 28 2 0 123 0 5 15 chain 3866 chr16 90354753 + 15413103 15413147 MIRb 242 - 131 175 209357 44 chain 43183 chr16 90354753 + 15425425 15425971 MLT2A2 560 + 0 560 65195 194 10 13 201 0 11 141 chain 43744 chr16 90354753 + 15482721 15483572 MER41A 554 + 13 553 64512 52 0 1 367 312 0 120 chain 134874 chr16 90354753 + 15485895 15487402 L1PA5 6144 + 4622 6128 27042 755 1 0 751 chain 27669 chr16 90354753 + 15503165 15503574 LTR7B 505 + 7 495 94149 31 1 2 49 0 3 16 0 10 57 0 38 12 3 28 25 0 2 38 0 1 40 1 0 29 0 1 52 14 13 41 chain 29015 chr16 90354753 + 15513411 15513724 AluYb8 318 - 6 318 88923 53 0 1 132 2 0 126 chain 7660 chr16 90354753 + 15529932 15530110 L1MA3 4352 - 27 156 173161 10 2 1 26 1 0 6 1 0 21 3 1 27 5 0 21 39 0 16 chain 21132 chr16 90354753 + 15540997 15541379 THE1D 372 - 0 372 123440 32 1 0 14 32 26 105 35 42 112 13 1 25 0 2 13 chain 18494 chr16 90354753 + 15551616 15551983 THE1C 375 - 0 375 131515 158 50 51 47 51 51 12 0 9 33 2 0 14 chain 5042 chr16 90354753 + 15562505 15562570 L1MD2 1676 - 923 988 194709 65 chain 2950 chr16 90354753 + 15594469 15594506 MER33 330 + 43 80 226069 37 chain 2921 chr16 90354753 + 15619608 15619656 MLT2B4 540 + 479 538 226669 12 6 17 30 chain 8112 chr16 90354753 + 15624040 15624163 MER85 139 + 5 139 170429 66 8 9 14 0 10 35 chain 11535 chr16 90354753 + 15624467 15624753 THE1D 372 + 15 313 154169 39 81 78 34 28 27 26 4 20 74 chain 39534 chr16 90354753 + 15632787 15633282 MER1A 529 - 0 492 69979 66 4 0 333 0 1 92 chain 48872 chr16 90354753 + 15640294 15641594 PABL_A 660 - 0 660 59828 218 24 26 326 642 0 90 chain 3135 chr16 90354753 + 15647299 15647496 MER58B 340 - 6 204 222274 27 141 142 29 chain 5869 chr16 90354753 + 15656423 15656514 MER20 218 - 50 136 186485 9 1 2 65 6 0 10 chain 44840 chr16 90354753 + 15664420 15665044 MER41B 635 - 0 635 63241 34 1 6 40 0 5 63 3 0 6 30 32 276 4 5 41 0 1 126 chain 14660 chr16 90354753 + 15668227 15668428 LTR8 732 - 498 701 142386 72 6 12 111 4 0 8 chain 29746 chr16 90354753 + 15669379 15669870 MER51A 677 - 0 677 85671 63 1 0 5 8 0 69 31 29 115 31 219 38 1 0 86 1 11 42 chain 23950 chr16 90354753 + 15684133 15684437 AluY 311 + 2 291 110620 124 0 1 103 25 9 52 chain 24566 chr16 90354753 + 15708362 15708660 AluY 311 + 2 293 107164 103 0 1 21 8 0 166 chain 26617 chr16 90354753 + 15725447 15725860 L1PA8 5853 - 0 402 97608 93 1 0 19 3 1 44 21 18 57 17 14 38 6 5 75 1 0 38 chain 5305 chr16 90354753 + 15727158 15727216 MER107 203 + 0 58 191972 58 chain 14142 chr16 90354753 + 15741957 15742185 L1MA3 4352 - 26 246 144065 12 1 0 19 1 0 7 1 0 5 4 3 22 1 0 23 4 0 116 2 0 5 0 3 5 chain 59332 chr16 90354753 + 15749348 15749995 L1PA3long 6157 + 5509 6156 53204 647 chain 2913 chr16 90354753 + 15762534 15762567 MER3 215 - 91 124 226812 33 chain 4144 chr16 90354753 + 15763659 15763707 MER20 218 - 79 127 205326 48 chain 3242 chr16 90354753 + 15809395 15809436 L1MB8 1703 + 1545 1586 220179 41 chain 2899 chr16 90354753 + 15841144 15841227 MIRb 242 - 127 208 227047 6 1 0 33 31 30 12 chain 3858 chr16 90354753 + 15843506 15843601 MER20 218 - 65 161 209467 14 11 12 28 20 20 22 chain 5730 chr16 90354753 + 15848891 15848970 MER58A 224 - 110 207 187839 69 0 18 10 chain 3352 chr16 90354753 + 15869139 15869177 MER58A 224 + 42 80 218023 38 chain 27840 chr16 90354753 + 15915503 15915795 AluYb8 318 + 10 302 93561 292 chain 16153 chr16 90354753 + 15939044 15939275 MER30 238 + 0 238 137890 106 5 15 77 8 5 35 chain 23594 chr16 90354753 + 15970064 15970348 AluSc8 310 + 12 301 112611 95 0 2 23 0 3 166 chain 22059 chr16 90354753 + 15979276 15979543 AluSc5 308 - 38 304 119975 58 1 0 208 chain 17147 chr16 90354753 + 15997701 15997930 AluSq2 311 + 0 291 135178 40 11 72 21 0 1 157 chain 3297 chr16 90354753 + 16008699 16008736 L1PB3 3668 + 3529 3566 219031 37 chain 76945 chr16 90354753 + 16011723 16012711 L1PA6 6164 + 5190 6161 45001 390 20 10 160 0 1 177 0 1 79 2 0 7 1 4 108 19 9 25 chain 5126 chr16 90354753 + 16030335 16030397 MER82 654 + 314 376 193818 62 chain 4381 chr16 90354753 + 16033566 16033639 MER20 218 + 6 79 202181 12 5 6 7 1 0 48 chain 12228 chr16 90354753 + 16058099 16058257 THE1C-int 1605 - 1121 1286 151309 32 0 7 126 chain 13442 chr16 90354753 + 16065646 16065835 LTR9B 643 - 0 193 146544 40 17 15 82 0 7 45 1 0 4 chain 108079 chr16 90354753 + 16074588 16076113 THE1C-int 1605 - 11 1605 34693 232 0 1 5 1 0 59 0 3 74 3 0 50 8 9 138 15 17 144 34 38 7 2 0 365 5 12 25 8 9 232 7 61 96 3 5 12 chain 4348 chr16 90354753 + 16114320 16114366 MER58A 224 + 37 83 202624 46 chain 22524 chr16 90354753 + 16142574 16142855 AluSp 311 + 13 296 117916 78 0 3 183 5 4 15 chain 3220 chr16 90354753 + 16167686 16167723 MIR 256 - 198 235 220569 37 chain 18374 chr16 90354753 + 16198186 16198440 LTR12C 1709 - 630 940 131868 18 8 65 159 1 0 68 chain 7518 chr16 90354753 + 16210276 16210397 MER44B 551 - 92 214 174056 7 0 1 44 0 3 11 13 10 46 chain 20108 chr16 90354753 + 16210988 16211327 THE1C 375 - 14 373 126800 90 0 17 55 25 23 45 39 44 85 chain 38000 chr16 90354753 + 16286828 16287286 MER41A 554 + 2 461 72133 250 0 1 208 chain 23981 chr16 90354753 + 16304987 16305275 AluSp 311 + 11 299 110437 288 chain 27698 chr16 90354753 + 16310078 16310538 L1MA3 4352 - 146 613 94048 27 1 0 42 86 76 105 0 18 199 chain 6010 chr16 90354753 + 16385060 16385134 L1PA2 6032 + 5958 6032 185133 74 chain 44098 chr16 90354753 + 16518266 16518812 MLT2A2 560 - 0 560 64091 143 0 11 199 10 13 194 chain 14387 chr16 90354753 + 16532992 16533368 MLT1B 390 - 5 359 143243 120 174 153 57 1 0 24 chain 19215 chr16 90354753 + 16545486 16545870 MSTA 426 - 0 426 129486 108 10 30 31 60 58 28 20 0 10 18 62 18 1 0 4 0 1 76 chain 25303 chr16 90354753 + 16573339 16573676 THE1B 368 + 25 368 103212 15 0 5 123 2 0 28 1 3 103 1 2 64 chain 27908 chr16 90354753 + 16573806 16574100 AluYa5 310 - 16 310 93329 294 chain 29008 chr16 90354753 + 16585521 16585824 AluYg6 310 + 0 303 88950 303 chain 25215 chr16 90354753 + 16595665 16595973 AluSg7 307 - 0 307 103661 9 2 0 166 0 1 131 chain 24498 chr16 90354753 + 16597359 16597708 THE1B 368 + 0 368 107553 44 6 21 73 0 4 27 5 4 91 0 1 42 12 12 49 chain 53208 chr16 90354753 + 16599999 16600809 L1PB1 5432 - 9 777 56890 19 1 0 8 6 5 21 1 0 20 6 4 14 1 0 5 2 0 16 8 0 11 2 0 4 1 0 15 1 0 45 2 1 14 2 1 52 2 0 9 5 1 11 1 0 11 1 0 17 21 2 10 1 4 178 0 4 266 chain 13189 chr16 90354753 + 16610280 16610493 L1PA8 5853 + 5638 5847 147512 40 16 14 45 7 6 17 1 0 87 chain 10542 chr16 90354753 + 16623790 16623942 MLT2B2 565 - 416 565 158079 9 0 1 64 11 7 68 chain 11090 chr16 90354753 + 16635901 16636026 L1PA4 6152 - 0 125 155841 125 chain 28561 chr16 90354753 + 16642402 16642702 AluYb8 318 - 17 318 90915 62 0 1 238 chain 37464 chr16 90354753 + 16652463 16652934 L1PA7 6471 - 12 491 72873 93 7 15 41 1 0 216 0 1 113 chain 82856 chr16 90354753 + 16669115 16670060 L1PA4 6152 - 9 954 42394 104 0 1 654 9 8 178 chain 64832 chr16 90354753 + 16670060 16670781 L1PA4 6152 + 4474 5195 50570 721 chain 44444 chr16 90354753 + 16705922 16706476 MLT2A2 560 + 0 560 63642 66 0 2 115 1 0 81 0 3 16 0 1 35 0 1 240 chain 125698 chr16 90354753 + 16712251 16713718 SVA_B 1603 - 0 1602 29186 575 1 2 24 4 44 30 0 1 2 4 0 48 0 80 753 1 8 7 0 11 5 1 0 12 chain 19908 chr16 90354753 + 16719442 16719725 AluSp 311 + 22 306 127451 101 38 39 144 chain 18886 chr16 90354753 + 16727850 16728214 THE1B 368 + 0 368 130404 166 125 129 73 chain 7799 chr16 90354753 + 16736075 16736170 MSTA 426 - 39 137 172312 61 0 3 34 chain 23625 chr16 90354753 + 16757319 16757703 THE1D 372 + 0 372 112440 28 5 0 28 13 4 14 4 5 87 32 34 27 1 0 145 chain 268882 chr16 90354753 + 16779794 16782883 L1PA6 6164 - 2 3101 15240 6 7 0 383 5 6 599 0 5 382 0 3 27 0 5 9 0 1 368 1 5 667 1 0 509 1 0 124 chain 44103 chr16 90354753 + 16782883 16783394 L1PA6 6164 + 2547 3059 64083 260 0 1 251 chain 3375 chr16 90354753 + 16792206 16792245 MLT1C 463 + 49 88 217577 39 chain 36241 chr16 90354753 + 16802379 16802839 L1PA8 5853 - 0 453 74567 93 1 0 19 2 1 52 2 1 5 1 0 72 2 0 48 1 0 162 chain 2966 chr16 90354753 + 16804600 16804635 L1MC5 759 - 323 358 225748 35 chain 16714 chr16 90354753 + 16832458 16832779 THE1C 375 + 14 336 136359 30 3 4 5 1 0 34 47 52 45 1 2 41 22 17 92 chain 557404 chr16 90354753 + 16838900 16845039 L1PA3long 6157 - 0 6151 564 1451 0 3 2456 0 1 258 0 4 819 0 3 86 0 1 1069 chain 8252 chr16 90354753 + 16847925 16848030 MER30 238 - 0 102 169668 39 3 0 63 chain 455588 chr16 90354753 + 16862870 16868537 L1PA7 6471 - 3 5949 8555 151 3 9 240 0 1 277 0 3 168 1 0 75 0 1 104 2 1 180 6 7 54 0 4 174 0 1 69 1 0 385 4 0 40 0 2 525 0 2 42 6 8 109 1 0 126 2 1 134 1 4 22 1 5 41 8 0 407 5 10 449 2 0 701 0 1 266 0 260 10 0 1 52 11 13 437 1 0 4 0 1 109 2 1 259 chain 5798 chr16 90354753 + 16881759 16881829 MSTD 398 + 8 78 187159 70 chain 24367 chr16 90354753 + 16883586 16883878 L1PA7 6471 - 6 296 108280 6 2 0 284 chain 19371 chr16 90354753 + 16883878 16884104 L1PA7 6471 + 5952 6181 129019 37 1 4 188 chain 6386 chr16 90354753 + 16894944 16895050 MER20 218 + 44 151 182133 36 15 16 55 chain 30558 chr16 90354753 + 16930351 16930669 AluYb8 318 - 0 318 83318 318 chain 567287 chr16 90354753 + 16934393 16940413 L1HS 6032 - 0 6020 73 6020 chain 89776 chr16 90354753 + 16941467 16942513 L1PA6 6164 - 3 1051 39728 5 2 0 59 1 0 540 0 3 235 1 4 90 2 1 111 chain 20124 chr16 90354753 + 16972709 16972936 L1PA3long 6157 + 5916 6149 126757 85 0 7 107 1 0 34 chain 3672 chr16 90354753 + 17033013 17033082 MER58A 224 - 147 216 212353 33 0 10 10 10 0 16 chain 19028 chr16 90354753 + 17036867 17037093 MER4A1 472 - 246 472 130041 226 chain 346158 chr16 90354753 + 17040557 17044779 L1PA7 6471 - 17 4244 11725 591 0 8 234 1 4 14 1 5 4 0 1 600 9 8 24 0 5 7 3 2 273 0 10 502 1 2 630 4 1 7 0 1 538 0 1 344 11 0 27 25 12 372 chain 4000 chr16 90354753 + 17049607 17049653 LTR16A2 485 - 53 99 207392 46 chain 5080 chr16 90354753 + 17070128 17070184 Tigger3b 1229 + 794 850 194298 56 chain 22148 chr16 90354753 + 17075014 17075290 AluSp 311 - 25 300 119598 160 1 0 115 chain 4873 chr16 90354753 + 17081440 17081497 LOR1b 457 - 362 419 196559 57 chain 30460 chr16 90354753 + 17097719 17098084 L1PA6 6164 - 17 382 83512 365 chain 432170 chr16 90354753 + 17098111 17103648 L1PA4 6152 - 6 5548 9261 103 0 1 45 0 1 369 46 45 274 0 4 479 0 2 188 1 0 39 0 1 5 1 0 82 0 1 155 0 4 110 0 1 329 0 1 677 1 5 48 1 0 856 2 0 475 0 5 196 0 1 400 2 0 6 0 2 59 9 0 68 14 15 135 24 0 124 9 26 205 chain 4391 chr16 90354753 + 17105724 17105780 L1MA2 4263 - 150 205 202060 9 1 0 46 chain 14466 chr16 90354753 + 17118031 17118196 L1PA6 6164 - 6 171 142997 165 chain 173122 chr16 90354753 + 17142384 17144315 L1PA4 6152 - 9 1932 21697 1262 10 1 654 0 1 5 chain 3304 chr16 90354753 + 17161901 17161939 MER58A 224 - 145 183 218906 38 chain 34846 chr16 90354753 + 17174222 17174647 L1PA8 5853 - 32 452 76412 61 1 0 19 3 2 60 1 0 71 2 0 46 1 0 46 0 1 114 chain 5300 chr16 90354753 + 17204673 17204734 MER85 139 + 58 119 192017 61 chain 111505 chr16 90354753 + 17215464 17217148 L1PB1 5432 - 10 1677 33788 18 1 0 12 1 0 22 1 0 23 5 3 12 3 1 5 1 0 16 39 14 59 1 0 18 2 1 50 2 0 9 22 17 4 1 0 23 5 0 12 34 22 12 0 8 9 2 1 67 1 0 6 0 1 5 0 1 6 1 0 4 1 2 153 0 8 175 0 2 8 0 4 128 0 4 271 0 2 26 0 7 329 1 11 71 2 0 5 chain 132332 chr16 90354753 + 17217148 17219012 L1PBa 3878 - 1232 3267 27554 7 1 0 131 8 85 314 5 34 44 0 1 4 0 8 20 0 1 15 0 1 87 1 0 10 1 3 144 1 9 106 9 8 8 0 3 137 1 5 4 0 1 14 0 4 82 0 7 22 2 0 57 1 8 58 1 2 100 6 15 100 4 3 7 0 4 148 26 28 32 0 8 146 chain 45449 chr16 90354753 + 17284153 17284681 L1PA5 6144 - 0 528 62548 528 chain 13842 chr16 90354753 + 17284858 17285044 MER107 203 - 0 191 145094 15 1 0 10 1 10 14 3 0 103 1 0 4 0 1 34 chain 17143 chr16 90354753 + 17335728 17336049 THE1B 368 - 33 366 135193 27 1 0 30 85 98 11 1 0 121 0 1 45 chain 23921 chr16 90354753 + 17350229 17350525 AluSg7 307 + 2 300 110804 129 0 1 121 5 6 41 chain 11766 chr16 90354753 + 17371555 17371712 L1PA16 3655 - 93 247 153194 79 3 0 75 chain 24654 chr16 90354753 + 17488819 17489187 THE1D 372 - 0 372 106702 94 1 0 38 28 30 14 4 6 32 1 2 156 chain 3544 chr16 90354753 + 17512835 17512874 MER58A 224 - 143 182 214660 39 chain 5706 chr16 90354753 + 17513297 17513364 MER58A 224 - 115 182 188054 67 chain 21900 chr16 90354753 + 17537148 17537511 THE1D 372 + 0 372 120621 55 0 2 103 70 78 99 5 4 31 chain 10348 chr16 90354753 + 17578388 17578508 MER50 708 + 569 689 158913 120 chain 23822 chr16 90354753 + 17579040 17579376 L1PA8 5853 - 4 333 111350 87 4 3 15 1 0 56 6 5 4 1 0 71 2 0 46 1 0 42 chain 9430 chr16 90354753 + 17584339 17584521 L1PB1 5432 + 5161 5326 163408 7 2 0 46 6 5 17 1 0 46 1 0 14 24 12 18 chain 8971 chr16 90354753 + 17590575 17590681 L1PA6 6164 + 6056 6162 165767 106 chain 6176 chr16 90354753 + 17597545 17597649 MER20 218 - 82 185 183770 47 1 0 6 1 2 29 8 7 12 chain 157350 chr16 90354753 + 17598871 17600721 SVA_D 2077 - 0 2077 23684 622 0 98 165 50 0 89 2 187 131 0 37 105 40 0 620 3 0 23 chain 3624 chr16 90354753 + 17599658 17599708 SVA_D 2077 - 709 758 94302 21 1 0 28 chain 22884 chr16 90354753 + 17600738 17601002 L1PA5 6144 - 5 269 116172 179 0 1 4 1 0 80 chain 29532 chr16 90354753 + 17608654 17608964 AluYa5 310 - 0 310 86517 310 chain 15399 chr16 90354753 + 17612034 17612361 L1PB1 5432 - 12 312 140203 16 1 0 13 1 0 4 0 3 14 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 1 0 15 1 0 41 11 10 9 2 1 53 17 11 9 1 0 7 3 2 18 chain 17132 chr16 90354753 + 17625123 17625493 L1PB1 5432 - 106 450 135225 18 18 8 4 1 0 15 1 0 45 8 7 10 1 0 30 41 35 10 9 7 22 7 0 8 1 4 121 chain 2706 chr16 90354753 + 17635906 17635942 MER5A1 166 - 127 160 230172 5 3 0 28 chain 15107 chr16 90354753 + 17642028 17642459 L1PB1 5432 - 10 391 141009 15 4 3 10 10 9 15 1 0 20 84 69 45 1 0 15 2 1 53 2 0 8 34 28 16 7 0 9 27 12 53 chain 6462 chr16 90354753 + 17665867 17665949 MER53 195 + 112 194 181540 82 chain 38505 chr16 90354753 + 17693460 17693899 L1PA7 6471 + 6027 6466 71430 439 chain 40719 chr16 90354753 + 17705725 17706278 MER41A 554 + 0 554 68278 250 0 1 150 6 8 54 19 18 49 5 4 20 chain 12893 chr16 90354753 + 17706319 17706480 MER41C 542 - 380 542 148660 112 0 1 49 chain 11355 chr16 90354753 + 17706920 17707054 MER41A 554 + 11 146 154882 81 0 1 53 chain 107503 chr16 90354753 + 17765336 17766621 L1PA7 6471 - 20 1304 34843 12 14 16 809 9 1 135 1 6 305 chain 86768 chr16 90354753 + 17766621 17767695 L1PA7 6471 + 4147 5168 40836 9 2 0 339 0 1 180 54 0 237 0 3 33 1 0 219 chain 29439 chr16 90354753 + 17802488 17802919 L1PA8 5853 - 6 433 86897 86 2 1 19 2 1 35 8 6 11 12 1 5 1 0 21 0 4 49 2 0 48 1 0 106 0 11 23 chain 29339 chr16 90354753 + 17809382 17809687 AluYa5 310 - 5 310 87351 305 chain 3065 chr16 90354753 + 17810104 17810136 LTR19A 502 + 0 32 223669 32 chain 49892 chr16 90354753 + 17811582 17812213 L1PA8 5853 + 5234 5853 59092 107 1 0 99 2 0 124 1 0 45 2 0 70 1 0 8 3 0 53 2 1 22 1 0 90 chain 17901 chr16 90354753 + 17820471 17820769 L1PB2 3958 + 3541 3836 133097 76 11 10 54 6 5 42 1 4 23 12 10 10 1 0 13 1 0 48 chain 3832 chr16 90354753 + 17825264 17825365 MER63A 208 - 1 101 209898 27 46 45 28 chain 542736 chr16 90354753 + 17827022 17833157 L1PA5 6144 + 3 6139 2385 539 0 3 578 13 7 55 0 1 843 1 0 200 0 1 1019 0 3 1251 0 1 213 0 1 642 1 2 418 4 0 110 0 1 248 chain 3930 chr16 90354753 + 17849237 17849282 MLT1I 406 + 361 406 208417 45 chain 66898 chr16 90354753 + 17860146 17860916 L1PA7 6471 + 5697 6467 49682 770 chain 32474 chr16 90354753 + 17904407 17904807 L1PA8 5853 - 6 401 80070 87 1 0 16 1 0 63 1 0 73 5 4 42 1 0 110 chain 9576 chr16 90354753 + 17916595 17916729 MER85 139 + 5 139 162714 91 8 9 5 1 0 29 chain 22042 chr16 90354753 + 17967305 17967578 AluY 311 + 2 277 120057 103 0 1 13 7 8 150 chain 14154 chr16 90354753 + 17980368 17980588 MER39B 650 + 3 254 144028 14 1 0 18 0 12 12 7 5 89 3 2 57 0 23 19 chain 537357 chr16 90354753 + 18000282 18006420 L1PA5 6144 + 3 6144 3262 417 0 5 608 1 0 90 13 7 55 0 1 514 0 1 41 0 1 201 0 1 20 0 6 341 0 1 2405 0 1 596 0 1 103 0 1 343 9 0 218 25 25 138 chain 9153 chr16 90354753 + 18012057 18012192 MLT1B 390 + 243 375 164797 30 0 3 8 3 0 62 4 1 28 chain 8586 chr16 90354753 + 18021585 18021688 MLT1A 405 - 77 180 167806 103 chain 27031 chr16 90354753 + 18027233 18027605 THE1B 368 + 0 368 96180 15 2 0 25 0 5 92 16 8 27 3 2 126 0 2 66 chain 17952 chr16 90354753 + 18032755 18032956 L1PA5 6144 - 4 205 132977 201 chain 37540 chr16 90354753 + 18044632 18045185 L1PA8 5853 + 5323 5853 72767 241 1 0 44 2 0 67 18 16 49 2 1 10 2 0 3 1 0 6 4 3 28 19 6 56 chain 41962 chr16 90354753 + 18054691 18055227 MER41A 554 + 11 554 66671 188 0 1 13 4 5 41 0 1 145 0 4 145 chain 26334 chr16 90354753 + 18069918 18070248 L1PA8 5853 - 4 326 98676 89 1 0 16 1 0 50 2 0 12 1 0 74 2 0 46 1 0 35 chain 37270 chr16 90354753 + 18095374 18095870 L1PB1 5432 - 329 823 73135 175 0 1 4 1 0 123 1 0 103 0 1 64 4 0 8 1 3 12 chain 14269 chr16 90354753 + 18095888 18096206 L1PB1 5432 + 5115 5404 143650 23 2 1 8 1 0 11 5 1 9 2 0 52 2 1 15 1 0 44 1 0 16 71 55 19 1 0 21 1 0 13 chain 11683 chr16 90354753 + 18110585 18110775 L1PB4 2604 + 2370 2546 153549 16 2 0 96 11 0 18 5 4 42 chain 25836 chr16 90354753 + 18110978 18111315 L1PA7 6471 - 3 335 100723 26 12 8 120 7 6 172 chain 14829 chr16 90354753 + 18111315 18111492 L1PA7 6471 + 5957 6134 141844 177 chain 26732 chr16 90354753 + 18124950 18125271 LTR17 781 - 455 781 97217 48 1 6 272 chain 8626 chr16 90354753 + 18129052 18129178 AluSc 308 + 1 131 167606 30 18 22 78 chain 29849 chr16 90354753 + 18146028 18146345 AluYb8 318 + 0 317 85286 317 chain 116902 chr16 90354753 + 18158908 18160711 L1MA1 4479 + 2352 4157 32158 80 5 6 41 0 3 11 0 72 102 2 1 103 2 0 33 1 0 16 0 1 27 0 1 7 1 0 10 1 0 91 1 0 28 2 0 156 17 15 19 8 0 76 19 12 42 10 6 78 3 0 129 6 4 62 1 0 4 35 8 118 1 0 5 0 2 18 29 26 61 1 0 19 2 0 14 1 0 88 1 0 5 3 0 115 0 1 10 1 0 9 0 1 19 2 0 35 1 0 9 1 0 6 chain 36939 chr16 90354753 + 18172750 18173196 L1PA7 6471 + 6024 6468 73604 38 0 1 396 3 0 9 chain 21980 chr16 90354753 + 18173203 18173493 AluSp 311 + 0 299 120314 63 0 18 51 2 0 160 7 0 7 chain 23254 chr16 90354753 + 18239517 18239786 AluSp 311 + 11 280 114423 269 chain 36979 chr16 90354753 + 18247262 18247730 L1PA7 6471 + 5982 6459 73536 111 0 1 216 1 0 13 0 1 27 8 16 92 chain 11090 chr16 90354753 + 18263890 18264015 L1PA4 6152 + 6027 6152 155840 125 chain 4511 chr16 90354753 + 18279689 18279763 MER20 218 - 113 182 200661 16 10 5 48 chain 22004 chr16 90354753 + 18284276 18284562 AluSp 311 + 14 291 120208 18 1 0 136 8 0 123 chain 15332 chr16 90354753 + 18288284 18288575 THE1B 368 - 72 368 140386 56 1 0 8 1 0 18 0 4 10 1 0 4 62 66 19 0 3 6 3 0 102 chain 13198 chr16 90354753 + 18289402 18289615 L1PA8 5853 - 6 215 147475 87 1 0 17 7 6 45 16 14 40 chain 5577 chr16 90354753 + 18296214 18296292 MLT1A0 366 - 252 327 189309 46 4 0 20 0 1 8 chain 53050 chr16 90354753 + 18299094 18299904 L1PB1 5432 + 4655 5423 56986 266 0 4 178 1 2 9 22 5 17 1 0 11 1 0 11 5 1 9 2 0 52 2 1 14 2 1 45 1 0 15 1 0 4 2 0 11 8 0 16 2 0 5 1 0 14 6 4 20 1 0 21 6 5 8 1 0 19 chain 24254 chr16 90354753 + 18302195 18302544 THE1B 368 - 0 368 108919 49 12 12 42 0 1 91 5 4 27 0 4 73 6 21 44 chain 26475 chr16 90354753 + 18326031 18326369 THE1B 368 - 0 343 98148 169 1 3 28 2 0 123 0 5 15 chain 25001 chr16 90354753 + 18363561 18363885 THE1C 375 - 34 375 104782 47 0 16 80 3 4 194 chain 14387 chr16 90354753 + 18366199 18366575 MLT1B 390 + 31 385 143242 24 1 0 57 174 153 120 chain 3866 chr16 90354753 + 18368631 18368675 MIRb 242 - 131 175 209356 44 chain 44333 chr16 90354753 + 18380786 18381332 MLT2A2 560 + 0 560 63784 194 10 13 201 0 11 141 chain 26070 chr16 90354753 + 18589315 18589775 L1MA3 4352 + 3739 4206 99751 200 7 25 97 86 76 42 1 0 27 chain 4208 chr16 90354753 + 18611031 18611180 MLT1J 494 - 204 360 204446 49 15 0 9 61 83 15 chain 11401 chr16 90354753 + 18612988 18613130 L1PB4 2604 - 52 194 154691 142 chain 4303 chr16 90354753 + 18616331 18616487 MER30 238 + 175 238 203180 14 94 1 48 chain 557538 chr16 90354753 + 18619372 18625512 L1PA3long 6157 + 6 6157 552 1069 0 1 912 0 4 254 0 1 312 0 1 2145 0 3 829 0 1 619 chain 4012 chr16 90354753 + 18638758 18638842 MIR 256 - 101 185 207201 35 20 21 4 1 0 24 chain 20313 chr16 90354753 + 18640804 18641063 AluSc8 310 + 39 302 126198 69 1 2 22 0 3 167 chain 2966 chr16 90354753 + 18659738 18659773 L1MC5 759 + 401 436 225747 35 chain 36372 chr16 90354753 + 18661566 18662026 L1PA8 5853 + 5400 5853 74396 164 1 0 46 2 0 69 1 0 8 2 1 52 2 1 19 1 0 93 chain 43708 chr16 90354753 + 18680983 18681494 L1PA6 6164 - 3105 3617 64556 251 0 1 260 chain 267939 chr16 90354753 + 18681494 18684586 L1PA6 6164 + 3063 6162 15298 124 1 0 516 1 0 660 1 5 368 0 1 9 0 5 412 0 5 599 5 6 383 7 0 6 chain 23485 chr16 90354753 + 18706664 18707051 THE1D 372 - 0 372 113194 145 1 0 27 35 34 87 4 5 14 13 4 28 5 0 28 chain 10911 chr16 90354753 + 18715668 18715981 L1MB8 1703 + 1236 1564 156547 73 50 0 10 62 132 49 27 22 42 chain 4519 chr16 90354753 + 18717891 18718237 L1MC4 1079 - 687 1002 200562 30 121 126 11 44 11 15 91 88 34 chain 24905 chr16 90354753 + 18718281 18718573 AluSc 308 + 16 308 105306 292 chain 10225 chr16 90354753 + 18728024 18728201 MSTA 426 + 206 387 159487 45 37 38 34 0 3 61 chain 131803 chr16 90354753 + 18745072 18746589 SVA_B 1603 + 0 1603 27671 7 1 0 12 14 25 808 1 0 12 1 0 15 4 0 11 0 1 29 0 82 371 1 0 230 chain 44930 chr16 90354753 + 18752367 18752921 MLT2A2 560 - 0 560 63134 241 0 1 34 0 1 16 0 3 84 1 0 116 0 2 62 chain 65589 chr16 90354753 + 18788175 18788896 L1PA4 6152 - 957 1678 50207 721 chain 83500 chr16 90354753 + 18788896 18789838 L1PA4 6152 + 5198 6141 42118 187 2 1 608 0 1 43 0 1 102 chain 14930 chr16 90354753 + 18798561 18798745 MER107 203 + 0 203 141542 152 1 20 31 chain 13543 chr16 90354753 + 18809610 18809775 L1PA7 6471 + 6308 6469 146198 93 4 0 68 chain 5562 chr16 90354753 + 18822409 18822610 Tigger4b 360 - 1 215 189464 35 5 23 6 17 0 12 0 6 6 6 0 6 50 59 32 9 12 17 chain 102152 chr16 90354753 + 18824007 18825155 L1PA5 6144 - 13 1170 36223 146 7 8 676 0 4 18 0 4 301 chain 546663 chr16 90354753 + 18832575 18838378 L1HS 6032 - 0 5803 1866 5803 chain 24939 chr16 90354753 + 18840048 18840334 AluSp 311 + 10 296 105113 286 chain 3712 chr16 90354753 + 18886555 18886598 Tigger4a 237 - 189 232 211771 43 chain 26571 chr16 90354753 + 18927564 18927861 AluYf4 310 + 9 306 97758 297 chain 6195 chr16 90354753 + 18947200 18947282 MLT2B4 540 + 7 88 183618 9 1 0 72 chain 17215 chr16 90354753 + 18954839 18955201 THE1B 368 + 0 368 135001 82 2 0 26 89 85 8 0 1 12 16 28 64 7 6 56 chain 24644 chr16 90354753 + 18960279 18960578 AluSp 311 + 0 294 106756 64 5 0 230 chain 22530 chr16 90354753 + 18966634 18966900 AluSx1 309 + 10 276 117897 266 chain 4963 chr16 90354753 + 18968249 18968311 Tigger2 2703 + 2586 2648 195566 62 chain 6402 chr16 90354753 + 18987211 18987305 MER21C 908 + 17 197 182009 72 1 87 21 chain 4711 chr16 90354753 + 18989988 18990048 MER4E1 777 - 55 115 198388 60 chain 30782 chr16 90354753 + 19001210 19001675 LTR7B 505 - 2 505 82898 49 14 13 54 0 1 24 1 0 39 0 1 42 29 0 28 6 68 69 0 10 72 9 4 29 chain 15483 chr16 90354753 + 19001853 19002068 LTR7B 505 - 10 223 139944 40 15 14 82 1 0 77 chain 2014 chr16 90354753 + 19002068 19002096 LTR7B 505 - 225 253 238486 28 chain 10284 chr16 90354753 + 19002130 19002264 LTR7B 505 - 280 465 159213 12 0 38 62 0 10 10 0 3 50 chain 3516 chr16 90354753 + 19002265 19002303 LTR7B 505 - 467 505 215124 38 chain 128307 chr16 90354753 + 19002921 19004377 L1PA5 6144 - 12 1457 28492 254 12 1 1190 chain 193174 chr16 90354753 + 19005231 19007995 HERVH-int 3825 - 0 3024 19756 376 5 2 107 79 7 68 19 17 4 0 1 57 0 367 11 0 3 481 0 2 24 0 1 200 0 5 485 1 0 4 3 4 53 48 53 63 9 0 9 0 12 8 0 1 176 15 0 49 1 4 21 4 0 6 1 7 99 11 12 26 52 10 189 chain 6345 chr16 90354753 + 19008552 19008623 LTR7B 505 - 434 505 182425 71 chain 65439 chr16 90354753 + 19014663 19015374 SVA_F 1814 + 1057 1814 50363 32 0 49 39 1 0 10 1 0 617 1 0 10 chain 5194 chr16 90354753 + 19023478 19023539 U6 107 + 0 61 193094 61 chain 24035 chr16 90354753 + 19024553 19024829 AluSp 311 - 25 302 110135 165 0 1 111 chain 24610 chr16 90354753 + 19028989 19029290 AluYf4 310 - 10 309 106936 25 17 15 259 chain 24145 chr16 90354753 + 19036056 19036336 AluY 311 + 10 291 109496 122 0 1 158 chain 23955 chr16 90354753 + 19046255 19046576 L1PA16 3655 + 3250 3569 110591 40 18 16 263 chain 25302 chr16 90354753 + 19062576 19062852 L1PA4 6152 - 1 277 103220 276 chain 21571 chr16 90354753 + 19102913 19103254 THE1C 375 + 7 375 121880 46 5 32 94 0 3 18 22 16 120 10 13 26 chain 6988 chr16 90354753 + 19108012 19108095 FLAM_A 137 + 47 130 177555 83 chain 4269 chr16 90354753 + 19148826 19148946 MER20 218 + 38 161 203633 4 1 0 30 12 13 5 2 0 28 25 30 13 chain 15949 chr16 90354753 + 19149252 19149473 MER30 238 + 0 238 138522 101 15 32 105 chain 6930 chr16 90354753 + 19158282 19158384 MER5A1 166 - 28 131 177960 13 11 12 78 chain 22198 chr16 90354753 + 19160747 19161116 THE1D 372 + 0 355 119362 75 19 0 87 49 55 67 2 1 70 chain 2552 chr16 90354753 + 19175201 19175231 Charlie4a 502 - 136 166 232463 30 chain 14671 chr16 90354753 + 19201758 19202090 L1MB3 1562 - 10 322 142357 28 1 0 55 0 7 17 53 24 19 0 6 34 45 47 61 5 0 14 chain 23881 chr16 90354753 + 19227071 19227427 THE1B 368 - 0 368 111018 64 22 21 47 0 1 43 2 0 27 1 0 96 10 25 44 chain 65601 chr16 90354753 + 19227706 19228481 L1PA7 6471 - 1 778 50293 318 0 1 181 0 1 276 chain 30558 chr16 90354753 + 19230442 19230760 AluYb9 318 + 0 318 83322 318 chain 29490 chr16 90354753 + 19252260 19252568 AluYa5 310 - 2 310 86671 308 chain 23951 chr16 90354753 + 19260324 19260600 AluY 311 + 10 287 110611 122 0 1 154 chain 20167 chr16 90354753 + 19271167 19271529 MER4B 649 - 75 444 126623 121 54 34 27 1 9 9 0 9 27 20 30 103 chain 37428 chr16 90354753 + 19294531 19294981 LTR45B 484 - 11 461 72928 450 chain 16854 chr16 90354753 + 19305082 19305415 L1MA3 4352 - 0 289 135959 15 7 5 4 1 0 14 1 0 26 8 6 23 2 0 23 4 0 123 3 0 7 43 14 29 chain 21608 chr16 90354753 + 19309287 19309581 AluSp 311 + 0 298 121742 21 4 1 120 3 11 116 2 1 28 chain 3976 chr16 90354753 + 19318067 19318127 MIRb 242 - 117 192 207742 45 4 19 11 chain 7724 chr16 90354753 + 19321349 19321461 L1MB5 1630 + 1011 1126 172749 48 0 2 38 7 8 19 chain 3877 chr16 90354753 + 19332994 19333044 MLT2D 439 + 97 148 209198 40 0 1 10 chain 4586 chr16 90354753 + 19338084 19338135 MIRb 242 - 114 165 199787 51 chain 22854 chr16 90354753 + 19343162 19343529 MER41B 635 + 131 549 116317 53 5 15 46 38 76 136 20 23 69 chain 3571 chr16 90354753 + 19349279 19349352 MER91B 187 + 70 139 214123 14 18 13 8 0 1 33 chain 24865 chr16 90354753 + 19368728 19369032 AluSq4 311 - 7 310 105546 186 1 0 117 chain 2956 chr16 90354753 + 19376292 19376323 MER5A1 166 - 84 115 225967 31 chain 3366 chr16 90354753 + 19378898 19378998 MLT1I 406 - 71 169 217744 33 47 45 20 chain 6554 chr16 90354753 + 19380958 19381051 MSTB 430 - 76 173 180820 49 1 6 7 1 0 35 chain 21650 chr16 90354753 + 19397558 19397924 MSTA 426 + 10 405 121571 93 0 1 5 0 4 9 30 37 46 4 0 8 22 23 60 1 21 88 chain 27907 chr16 90354753 + 19401480 19401887 LOR1b 457 + 67 457 93336 55 9 10 16 26 1 86 0 7 215 chain 63460 chr16 90354753 + 19402180 19403108 LTR12 884 - 0 884 51261 484 0 22 55 41 0 10 0 41 128 0 25 41 26 1 15 66 0 62 chain 3650 chr16 90354753 + 19402719 19402760 LTR12 884 - 693 734 148975 41 chain 2322 chr16 90354753 + 19402939 19402965 LTR12 884 - 608 634 142704 26 chain 5538 chr16 90354753 + 19402980 19403042 LTR12 884 - 649 711 142704 62 chain 50533 chr16 90354753 + 19404903 19405488 LTR14C 587 - 0 587 58629 574 1 3 10 chain 50820 chr16 90354753 + 19412887 19413474 LTR14C 587 - 0 587 58422 587 chain 283847 chr16 90354753 + 19414447 19418205 MER61-int 3695 - 0 3695 14423 263 2 1 4 0 1 86 0 1 181 0 1 5 2 1 16 1 2 4 1 0 141 0 1 13 0 1 73 1 0 38 1 0 97 1 0 94 1 0 5 0 1 56 1 0 418 3 6 47 1 0 105 0 1 37 0 1 17 3 0 29 0 2 289 1 0 324 0 1 77 4 5 113 1 6 8 5 0 93 1 0 91 0 1 73 14 19 379 17 7 48 15 1 65 23 20 54 1 0 79 39 0 159 10 6 28 chain 38944 chr16 90354753 + 19421188 19421672 LTR15 485 - 0 485 70811 49 4 0 83 10 11 61 0 4 277 chain 18479 chr16 90354753 + 19432585 19432870 THE1B 368 + 0 306 131561 8 0 6 117 10 21 17 1 0 21 7 10 14 0 4 12 1 0 12 1 0 64 chain 13111 chr16 90354753 + 19442182 19442337 AluSc5 308 - 12 167 147804 155 chain 3557 chr16 90354753 + 19461515 19461556 MLT1K 546 - 8 49 214389 41 chain 17500 chr16 90354753 + 19478508 19479191 MLT1B 390 - 0 367 134267 23 25 27 111 11 8 30 397 83 53 1 0 32 chain 29012 chr16 90354753 + 19506330 19506635 AluYa5 310 - 5 310 88931 305 chain 8131 chr16 90354753 + 19530804 19530941 Tigger1 2417 + 2273 2404 170328 68 5 7 25 12 4 27 chain 86908 chr16 90354753 + 19554456 19555559 MER11A 1151 + 0 1147 40821 108 0 2 66 8 0 23 2 0 31 0 4 60 0 2 118 0 3 265 2 5 55 0 4 73 6 40 108 1 2 57 0 1 4 1 0 109 0 1 6 chain 12782 chr16 90354753 + 19578373 19578536 MER57B1 401 - 238 401 149132 163 chain 24083 chr16 90354753 + 19598669 19598973 AluSp 311 + 0 299 109848 173 13 8 118 chain 4556 chr16 90354753 + 19614645 19614859 MER33 330 + 41 264 200148 39 77 75 23 32 40 15 14 17 14 chain 3153 chr16 90354753 + 19618454 19618489 MLT1A 405 + 320 355 221880 35 chain 52535 chr16 90354753 + 19676810 19677562 L1MA2 4263 - 158 899 57275 26 0 3 18 7 0 90 3 2 7 0 1 144 1 0 4 17 14 6 1 0 109 0 3 16 1 0 77 5 0 18 2 0 25 1 3 99 0 1 75 chain 4916 chr16 90354753 + 19728465 19728569 MER44A 345 + 196 307 196100 20 24 30 9 2 3 49 chain 42411 chr16 90354753 + 19772010 19772549 MER41A 554 - 7 554 66135 32 0 2 32 7 12 301 0 1 167 chain 3570 chr16 90354753 + 19775969 19776009 MER41A 554 + 400 440 214138 40 chain 38709 chr16 90354753 + 19796723 19797279 MER51A 677 + 0 661 71142 170 0 63 55 10 0 4 0 72 60 12 8 128 8 0 23 8 0 78 chain 29466 chr16 90354753 + 19799168 19799616 LOR1b 457 + 0 440 86773 25 24 22 46 1 7 42 7 1 188 0 2 9 2 0 20 6 0 78 chain 24375 chr16 90354753 + 19806240 19806538 AluSx1 309 + 0 296 108225 120 2 0 176 chain 8460 chr16 90354753 + 19813584 19813713 MER85 139 - 0 139 168516 40 20 30 69 chain 11065 chr16 90354753 + 19817063 19817310 LTR8A 794 - 65 304 155944 25 32 29 18 50 43 5 0 3 95 1 0 21 chain 9180 chr16 90354753 + 19831580 19831688 AluSz6 309 + 24 132 164656 108 chain 34702 chr16 90354753 + 19835299 19835807 MER1A 529 - 0 499 76620 62 15 10 167 1 0 30 4 0 164 7 0 6 3 0 5 17 28 27 chain 3029 chr16 90354753 + 19914929 19914961 MLT1D 503 + 77 109 224395 32 chain 76828 chr16 90354753 + 19931260 19932412 L1MA3 4352 - 0 1133 45069 15 17 13 10 2 1 25 1 0 6 1 0 24 2 0 21 5 1 34 0 2 77 46 36 362 0 3 101 37 34 190 3 0 5 0 3 8 6 7 79 0 1 75 chain 56789 chr16 90354753 + 19935878 19936574 L1PA8 5853 - 0 691 54661 93 1 0 19 2 1 51 1 0 7 1 0 74 2 0 46 1 0 73 0 1 258 0 1 67 chain 24058 chr16 90354753 + 19951861 19952214 THE1C 375 - 0 375 109996 140 37 55 39 1 5 136 chain 18753 chr16 90354753 + 19960837 19961112 MER1A 529 - 0 284 130817 47 23 24 56 0 6 46 1 3 102 chain 14331 chr16 90354753 + 19966466 19966652 MER4A1 472 + 0 177 143459 18 9 0 159 chain 94475 chr16 90354753 + 19966652 19967746 L1PA7 6471 + 5376 6470 38215 245 1 0 88 0 1 760 chain 23192 chr16 90354753 + 19977001 19977354 THE1B 368 + 0 368 114714 169 1 0 19 45 55 26 0 2 86 0 4 7 chain 18107 chr16 90354753 + 19981628 19981924 THE1D 372 + 79 371 132579 56 65 62 95 1 0 79 chain 16926 chr16 90354753 + 19994571 19994902 THE1B 368 - 12 368 135781 68 79 90 30 4 3 97 5 14 6 0 6 42 chain 30188 chr16 90354753 + 20007022 20007434 L1PA16 3655 - 76 498 84227 240 8 9 37 2 0 88 1 12 36 chain 10256 chr16 90354753 + 20008784 20008969 MER58A 224 + 41 214 159349 78 46 34 61 chain 5739 chr16 90354753 + 20018390 20018546 MER58A 224 + 0 154 187746 17 18 0 10 1 19 37 25 24 23 7 6 18 chain 23568 chr16 90354753 + 20024965 20025290 THE1C 375 + 1 331 112757 65 3 4 65 0 4 47 9 9 136 chain 83527 chr16 90354753 + 20029242 20030194 L1PA6 6164 + 5199 6154 42106 117 0 3 835 chain 25030 chr16 90354753 + 20035419 20035783 THE1B 368 + 0 368 104636 15 2 0 22 0 5 101 11 16 13 11 10 109 3 0 77 chain 7079 chr16 90354753 + 20039251 20039354 L1MA7 2200 + 1876 1977 176892 71 6 4 26 chain 4467 chr16 90354753 + 20045158 20045214 MADE1 96 - 0 96 201149 23 0 40 33 chain 3262 chr16 90354753 + 20122650 20122689 MIR 256 - 147 186 219745 39 chain 4062 chr16 90354753 + 20122992 20123041 MLT1B 390 - 240 289 206458 49 chain 18337 chr16 90354753 + 20124513 20124918 L1PB1 5432 + 5064 5422 131968 39 1 2 9 7 0 21 1 0 9 1 0 12 2 0 3 2 0 9 2 0 52 18 16 45 1 0 14 62 38 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 28658 chr16 90354753 + 20133018 20133318 AluYf4 310 + 0 300 90497 300 chain 3117 chr16 90354753 + 20155293 20155353 MIR 256 - 119 178 222592 31 15 14 14 chain 117143 chr16 90354753 + 20155572 20156906 L1PA6 6164 - 2 1338 32074 330 0 1 523 2 1 369 0 2 110 chain 3625 chr16 90354753 + 20184579 20184618 MER41A 554 + 501 540 213251 39 chain 44258 chr16 90354753 + 20184679 20185225 MER41A 554 + 0 554 63870 288 1 9 257 chain 3576 chr16 90354753 + 20193461 20193501 MIRb 242 - 135 175 214027 40 chain 26835 chr16 90354753 + 20196589 20196886 L1PA2 6032 - 1 298 96852 297 chain 74122 chr16 90354753 + 20196886 20197683 L1PA2 6032 + 4939 5736 46448 797 chain 5041 chr16 90354753 + 20265159 20265223 MLT1A0 366 - 292 356 194724 64 chain 7574 chr16 90354753 + 20274518 20274629 MER74A 558 - 2 111 173705 14 3 0 35 7 8 52 chain 27685 chr16 90354753 + 20288925 20289277 THE1B 368 - 0 368 94099 174 0 2 18 3 2 117 0 15 40 chain 60628 chr16 90354753 + 20295149 20296249 L1MA2 4263 + 3252 4220 52506 152 2 0 23 12 13 15 0 4 25 4 6 76 1 0 18 16 11 59 9 8 140 10 7 147 11 9 93 7 0 47 1 0 9 182 67 23 4 2 14 chain 12859 chr16 90354753 + 20307983 20308194 MER30 238 + 0 235 148804 17 21 30 60 14 29 99 chain 54040 chr16 90354753 + 20315670 20316284 L1PA5 6144 - 0 602 56334 7 13 0 324 0 1 270 chain 5664 chr16 90354753 + 20358125 20358191 L1PA5 6144 + 6068 6134 188437 66 chain 37766 chr16 90354753 + 20365080 20365520 L1PA5 6144 - 0 441 72469 331 1 2 108 chain 43187 chr16 90354753 + 20381915 20382463 MER41A 554 + 0 554 65189 381 0 1 87 9 14 71 chain 25832 chr16 90354753 + 20389778 20390136 L1PA8 5853 - 0 358 100737 93 1 0 19 2 1 48 1 0 13 3 2 63 1 6 43 2 1 69 chain 23545 chr16 90354753 + 20399969 20400249 AluSp 311 + 17 297 112878 280 chain 22716 chr16 90354753 + 20420338 20420623 AluY 311 + 25 297 117006 98 1 0 9 0 1 153 13 0 11 chain 45212 chr16 90354753 + 20436764 20437475 L1PB1 5432 - 2 678 62816 10 2 0 16 1 0 13 1 0 45 2 0 14 1 0 5 2 0 30 13 1 16 5 4 40 7 6 11 1 0 50 2 0 11 5 1 10 1 0 9 1 0 24 1 0 8 28 23 89 0 3 237 chain 12571 chr16 90354753 + 20460406 20460570 MSTB1-int 1597 + 15 180 149963 63 3 4 98 chain 28577 chr16 90354753 + 20463434 20463843 MLT2A1 477 + 0 408 90835 25 0 1 118 24 27 10 0 1 21 0 1 178 2 3 11 8 0 12 chain 64793 chr16 90354753 + 20463983 20465873 HERVL-int 5654 + 0 812 50660 522 23 8 23 1062 0 121 6 5 133 chain 51187 chr16 90354753 + 20468524 20469193 L1PBa 3878 + 3063 3731 58197 82 0 4 68 10 7 244 1 0 246 1 0 17 chain 24207 chr16 90354753 + 20474271 20474563 L1PA4 6152 + 5859 6151 109175 39 1 0 80 1 2 171 chain 5289 chr16 90354753 + 20475125 20475209 L1MB3 1562 - 250 335 192126 23 6 9 31 1 0 14 1 0 8 chain 6319 chr16 90354753 + 20492488 20492569 L1MA4A 3247 + 3024 3107 182653 19 1 3 61 chain 22331 chr16 90354753 + 20493214 20493477 AluSg4 309 + 38 301 118772 263 chain 3645 chr16 90354753 + 20499944 20499986 MLT2B1 522 - 186 228 212887 42 chain 28593 chr16 90354753 + 20546186 20546500 L1PA3long 6157 + 5841 6155 90776 314 chain 6915 chr16 90354753 + 20553894 20553990 L1MA4A 3247 - 126 223 178077 13 2 1 61 1 3 19 chain 3558 chr16 90354753 + 20571518 20571563 L1MB3 1562 - 144 189 214357 45 chain 4258 chr16 90354753 + 20572392 20572447 L1MB3 1562 + 1227 1280 203766 8 1 0 16 1 0 29 chain 51696 chr16 90354753 + 20581338 20582007 L1PBa 3878 - 147 815 57818 15 2 1 247 1 0 248 6 3 68 0 4 82 chain 8730 chr16 90354753 + 20584658 20584913 HERVL-int 5654 - 4842 5096 50695 133 6 5 116 chain 75246 chr16 90354753 + 20584918 20585973 MER11A 1151 - 0 1149 45899 66 1 0 80 15 14 97 0 58 21 0 1 65 1 5 38 20 24 138 0 12 227 0 11 66 1 0 38 1 0 96 7 15 77 chain 19618 chr16 90354753 + 20585975 20586548 HERVL-int 5654 - 5096 5654 50695 28 23 8 522 chain 30171 chr16 90354753 + 20586688 20587097 MLT2A1 477 - 69 477 84275 12 8 0 11 2 3 178 0 1 19 0 1 13 8 11 133 0 1 25 chain 12571 chr16 90354753 + 20589961 20590125 MSTB1-int 1597 - 1417 1582 149964 98 3 4 63 chain 43277 chr16 90354753 + 20608809 20609511 L1PB1 5432 + 4763 5430 65083 228 0 3 109 1 2 11 15 8 10 1 0 12 1 0 11 5 1 11 2 0 51 2 1 9 7 6 44 1 0 16 1 0 4 18 8 14 7 5 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 2 0 10 chain 24369 chr16 90354753 + 20642614 20642974 L1PB2 3958 + 3474 3838 108269 52 16 14 35 0 8 35 1 0 63 1 0 72 2 0 13 0 3 5 2 1 63 chain 4323 chr16 90354753 + 20652520 20652570 LTR49 580 + 11 61 202924 50 chain 42799 chr16 90354753 + 20653300 20653893 HERVK14-int 1672 + 5 590 65660 25 1 0 11 1 0 47 1 0 30 6 5 177 6 5 34 2 0 227 2 1 23 chain 57997 chr16 90354753 + 20654711 20655463 LTR12 884 - 15 884 53975 95 0 136 261 2 0 15 22 5 357 chain 142400 chr16 90354753 + 20656411 20658178 HERV17-int 4347 + 13 3881 25743 13 2 1 51 2 1 33 2 0 27 1 0 196 4 434 583 0 2 120 11 6 54 0 1 4 1 0 242 4 11 268 0 1672 149 chain 4741 chr16 90354753 + 20659503 20659563 LTR49 580 + 195 254 198002 29 1 0 30 chain 57885 chr16 90354753 + 20660522 20661267 MER4E 760 + 24 760 54042 142 7 0 195 8 0 82 2 1 5 0 5 297 0 2 7 chain 250722 chr16 90354753 + 20663873 20666721 L1PA5 6144 + 3279 6135 16199 1679 0 5 520 0 3 649 chain 72659 chr16 90354753 + 20668936 20669791 L1PA4 6152 - 0 862 47189 10 0 6 833 1 2 11 chain 52885 chr16 90354753 + 20670721 20671462 MER4E 760 + 0 743 57085 22 3 2 100 1 0 42 1 0 5 0 9 8 23 8 132 1 0 32 1 4 82 4 8 25 13 18 246 chain 38406 chr16 90354753 + 20674290 20674862 LTR14B 630 + 9 630 71567 162 0 42 51 1 12 19 0 25 69 4 13 11 42 12 11 8 0 194 chain 37471 chr16 90354753 + 20685425 20685919 LTR15 485 + 0 483 72855 122 5 1 27 0 2 129 0 4 58 11 0 7 0 1 67 4 0 20 3 1 36 0 3 5 chain 37623 chr16 90354753 + 20693044 20693521 LTR15 485 + 0 475 72658 125 4 0 24 0 2 128 1 5 59 3 1 98 2 0 33 chain 54784 chr16 90354753 + 20703465 20704210 MER4E 760 - 0 753 55853 412 7 10 76 1 0 4 0 1 81 21 25 133 0 1 10 chain 50363 chr16 90354753 + 20705163 20705752 LTR10C 591 + 0 591 58745 508 0 2 81 chain 137528 chr16 90354753 + 20712860 20714849 L1PA8 5853 - 0 1712 26556 93 1 0 19 4 3 49 2 1 9 1 0 71 2 0 44 1 0 371 269 0 169 0 1 4 1 0 10 2 0 8 1 0 133 0 1 503 0 1 222 chain 2680 chr16 90354753 + 20724733 20724766 Charlie7a 264 - 69 103 230440 4 0 1 29 chain 42372 chr16 90354753 + 20727587 20728196 LTR14B 630 + 7 630 66187 154 1 0 101 0 11 21 0 25 72 0 9 13 51 21 196 chain 117405 chr16 90354753 + 20734220 20735518 L1PA4 6152 - 6 1316 31993 137 0 8 693 0 4 468 chain 91877 chr16 90354753 + 20735518 20736544 L1PA4 6152 + 3804 4830 38978 133 0 1 470 8 7 415 chain 23715 chr16 90354753 + 20753435 20754251 LTR66 600 + 0 555 111959 48 0 4 10 0 3 34 4 0 17 25 37 15 0 3 109 446 134 35 1 34 72 chain 3381 chr16 90354753 + 20755292 20755333 MER57B2 428 - 383 424 217461 41 chain 7748 chr16 90354753 + 20755558 20755705 MER57B2 428 + 50 199 172616 62 6 7 40 26 27 13 chain 309412 chr16 90354753 + 20766974 20770352 L1PA3long 6157 - 15 3402 13026 133 0 2 2062 0 1 338 0 1 342 0 4 115 0 1 388 chain 35773 chr16 90354753 + 20771621 20772125 HERV1_LTRc 486 - 0 486 75173 104 11 12 76 9 0 79 13 0 111 20 23 81 chain 15811 chr16 90354753 + 20772558 20772749 MER4D0 881 + 690 881 138926 191 chain 48956 chr16 90354753 + 20816780 20817358 LTR10C 591 + 10 591 59778 69 0 1 428 0 2 81 chain 6517 chr16 90354753 + 20844083 20844245 MER3 215 + 5 205 181102 49 41 63 37 16 32 19 chain 28440 chr16 90354753 + 20875077 20875494 L1PA14 3548 + 3050 3444 91423 64 4 0 17 2 0 6 1 0 79 6 5 111 1 0 9 6 2 34 4 2 14 1 0 5 1 0 7 5 0 9 1 0 30 chain 27814 chr16 90354753 + 20886893 20887258 L1MA4 2864 + 1646 2010 93649 23 1 0 4 0 2 8 3 1 326 chain 25195 chr16 90354753 + 20926513 20926799 AluYc 301 + 1 289 103764 119 0 2 167 chain 3464 chr16 90354753 + 20933666 20933764 MLT2B1 522 - 10 92 215929 25 46 30 27 chain 19945 chr16 90354753 + 20943877 20944121 L1PA5 6144 + 5904 6144 127316 89 7 3 148 chain 18145 chr16 90354753 + 20972613 20972827 L1PA5 6144 + 5930 6144 132472 214 chain 3480 chr16 90354753 + 20992011 20992122 Charlie4a 502 - 79 182 215674 5 2 0 17 14 16 22 18 8 9 1 3 23 chain 129486 chr16 90354753 + 21000021 21001528 LTR12C 1709 - 0 1709 28207 481 0 4 105 5 3 4 1 0 75 0 200 356 0 1 153 0 1 303 1 0 23 chain 7149 chr16 90354753 + 21018446 21018533 L1MB8 1703 - 641 728 176408 87 chain 553543 chr16 90354753 + 21053993 21060024 L1PA2 6032 - 0 6032 1000 11 2 0 47 0 4 5714 1 0 256 chain 25567 chr16 90354753 + 21069972 21070324 L1PA8 5853 + 5507 5853 101889 4 0 1 52 1 0 44 2 0 70 2 1 8 5 4 49 2 1 14 6 5 93 chain 23801 chr16 90354753 + 21071835 21072139 AluSc5 308 - 0 303 111473 167 13 11 87 0 1 37 chain 4401 chr16 90354753 + 21088251 21088411 MER20 218 - 77 218 201914 39 45 27 23 39 38 14 chain 15623 chr16 90354753 + 21114352 21114629 L1PB1 5432 + 5171 5427 139513 49 2 1 15 1 0 45 1 0 15 24 12 19 2 0 4 1 0 15 2 0 24 1 0 12 0 5 4 1 0 13 1 0 14 1 0 4 2 0 5 chain 26477 chr16 90354753 + 21123664 21124015 THE1A 353 - 0 353 98137 104 0 1 86 0 1 41 12 11 82 0 1 26 chain 3438 chr16 90354753 + 21124021 21124063 THE1A-int 1579 - 6 49 216446 34 0 1 8 chain 33816 chr16 90354753 + 21124077 21124469 THE1A-int 1579 + 1181 1574 77914 133 0 1 259 chain 15281 chr16 90354753 + 21124474 21124681 THE1A 353 + 0 207 140535 24 0 1 78 11 10 94 chain 7199 chr16 90354753 + 21124682 21124767 MLT2A1 477 - 392 477 176071 85 chain 73724 chr16 90354753 + 21125877 21126720 L1PA5 6144 + 5296 6144 46661 53 0 3 266 3 2 508 2 5 11 chain 24863 chr16 90354753 + 21142898 21143194 AluSp 311 + 10 301 105554 118 5 0 173 chain 116991 chr16 90354753 + 21163735 21165134 LTR12C 1709 + 0 1692 32133 699 0 159 254 1 0 4 4 2 106 0 4 76 3 4 33 0 29 11 7 110 201 chain 8931 chr16 90354753 + 21167302 21167953 MLT1A0 366 - 41 322 165973 37 97 98 16 12 10 11 372 2 66 9 10 31 chain 11336 chr16 90354753 + 21194856 21194995 L1PA15 4387 + 3955 4094 154937 139 chain 10939 chr16 90354753 + 21196052 21196617 LTR48 738 - 515 720 156449 29 2 1 19 1 0 12 389 32 73 1 0 39 chain 21927 chr16 90354753 + 21200309 21200577 AluY 311 + 51 307 120511 75 5 0 140 7 0 41 chain 20707 chr16 90354753 + 21229419 21229790 MER61F 604 + 3 492 124941 22 11 91 17 2 0 8 1 29 61 0 9 53 0 1 4 1 0 7 6 7 30 14 13 27 0 2 20 0 2 6 2 0 40 3 4 36 chain 76584 chr16 90354753 + 21231789 21232806 L1PBa 3878 - 1948 2976 45173 316 5 0 31 2 3 119 15 18 208 10 19 228 8 9 60 0 2 15 chain 73032 chr16 90354753 + 21233107 21234061 LTR5_Hs 974 - 0 962 47011 38 16 15 89 0 1 48 7 7 94 6 8 14 1 2 23 10 9 164 0 4 300 0 2 144 chain 4103 chr16 90354753 + 21235588 21235641 MLT2F 649 + 594 648 205899 38 0 1 15 chain 25708 chr16 90354753 + 21255405 21255745 L1PA8 5853 + 5515 5848 101255 49 1 0 44 2 0 74 1 0 5 2 1 52 2 1 19 2 1 87 chain 25216 chr16 90354753 + 21266217 21266509 AluSp 311 - 8 300 103654 292 chain 6984 chr16 90354753 + 21267404 21267497 MER47B 469 + 287 377 177586 5 3 0 85 chain 53441 chr16 90354753 + 21301170 21301890 LTR12 884 + 11 884 56729 42 0 41 114 0 108 24 1 2 35 3 1 82 2 5 176 8 9 122 0 1 111 chain 62737 chr16 90354753 + 21305670 21306839 L1PA8 5853 - 1 844 51568 91 2 1 19 4 3 37 0 1 4 1 0 8 1 0 6 5 4 70 2 0 46 2 1 40 317 1 294 4 0 186 0 1 30 chain 69860 chr16 90354753 + 21317900 21318735 L1PA7 6471 - 4 844 48456 106 0 1 223 0 1 112 8 11 386 chain 129522 chr16 90354753 + 21323172 21324666 LTR12C 1709 - 5 1709 28204 476 0 4 90 0 207 90 1 0 837 chain 85326 chr16 90354753 + 21339222 21340259 MER11C 1089 + 5 1063 41405 74 0 1 42 1 0 98 0 5 24 0 1 63 0 4 217 0 4 53 1 2 92 3 7 45 0 1 151 0 1 173 chain 520318 chr16 90354753 + 21340344 21346497 L1PA6 6164 - 3 6164 5122 7 6 0 140 4 0 6 0 5 694 0 1 533 0 1 1589 0 1 217 0 1 105 0 1 534 0 1 181 0 3 31 0 8 287 9 5 157 0 1 237 6 10 36 1 0 73 0 3 604 6 5 174 9 11 265 8 0 234 chain 4489 chr16 90354753 + 21346836 21346898 L1M3 994 - 805 866 200911 17 1 0 44 chain 12439 chr16 90354753 + 21400285 21400447 MER41B 635 - 473 635 150501 35 1 2 32 1 0 93 chain 24898 chr16 90354753 + 21423002 21423307 AluSp 311 + 5 310 105352 305 chain 27251 chr16 90354753 + 21429238 21429546 AluYa5 310 + 0 310 95430 38 0 2 270 chain 21230 chr16 90354753 + 21444599 21444918 MER83B 357 + 0 324 123107 60 29 14 13 0 3 41 0 9 94 1 9 81 chain 19926 chr16 90354753 + 21444945 21445248 THE1B 368 + 1 306 127374 168 1 0 28 37 0 9 0 40 60 chain 42766 chr16 90354753 + 21445729 21446576 MER41A 554 + 13 553 65700 52 0 1 367 308 0 120 chain 130338 chr16 90354753 + 21448794 21450301 L1PA5 6144 + 4622 6132 28010 672 3 5 680 10 11 142 chain 28805 chr16 90354753 + 21450924 21452009 LTR7B 505 + 0 503 89868 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 80 1 0 79 641 13 49 chain 3315 chr16 90354753 + 21451333 21451370 LTR7B 505 + 454 491 218673 37 chain 18108 chr16 90354753 + 21451554 21451837 LTR7B 505 + 0 327 132574 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 chain 7657 chr16 90354753 + 21451854 21451946 LTR7B 505 + 349 441 173180 16 1 0 23 0 1 52 chain 3712 chr16 90354753 + 21474150 21474193 Tigger4a 237 - 189 232 211770 43 chain 7985 chr16 90354753 + 21522237 21522338 MER4B 649 + 295 397 171139 24 0 1 77 chain 6848 chr16 90354753 + 21598074 21598159 MER30 238 + 156 238 178591 34 3 0 48 chain 21125 chr16 90354753 + 21602527 21602805 AluSp 311 + 0 273 123472 56 2 1 75 15 11 130 chain 23190 chr16 90354753 + 21617383 21617659 AluSc8 310 + 8 286 114727 125 0 2 151 chain 73758 chr16 90354753 + 21640781 21641828 LTR12D 1347 - 0 1347 46645 86 22 52 9 0 200 157 11 12 115 0 17 32 0 2 75 1 0 21 0 31 54 41 0 148 0 36 74 5 31 80 1 0 115 chain 400665 chr16 90354753 + 21643399 21648216 HERV9-int 5642 - 818 5642 10070 11 0 1 101 1 0 593 0 4 381 20 0 703 1 0 199 0 1 84 6 7 53 0 2 372 0 10 33 0 1 109 17 19 256 0 8 405 1 0 53 11 1 258 0 4 48 4 0 190 0 3 119 1 0 182 14 16 161 12 9 87 0 5 167 0 4 164 chain 67269 chr16 90354753 + 21648284 21649236 LTR12D 1347 - 347 1347 49536 120 2 1 4 0 1 163 0 17 85 0 2 14 50 8 17 2 33 199 2 38 17 1 5 6 4 0 71 0 1 48 6 9 141 chain 8603 chr16 90354753 + 21653380 21653481 U6 107 + 6 107 167710 101 chain 6049 chr16 90354753 + 21685417 21685489 L1MD2 1676 - 440 512 184814 72 chain 53740 chr16 90354753 + 21702151 21702785 L1PA6 6164 - 12 646 56508 128 8 8 498 chain 23009 chr16 90354753 + 21719411 21719738 MER1A 529 - 112 487 115582 15 0 3 200 0 2 62 15 55 16 4 7 15 chain 4004 chr16 90354753 + 21721921 21721969 MIR 256 + 35 83 207319 48 chain 11577 chr16 90354753 + 21743681 21743900 L1PB1 5432 - 12 210 153995 16 1 0 13 1 0 21 1 0 26 2 0 12 8 5 18 24 13 15 1 0 44 1 0 15 chain 17604 chr16 90354753 + 21752992 21753228 AluSc 308 + 11 282 133981 36 0 10 60 12 37 128 chain 8000 chr16 90354753 + 21784164 21784277 LTR8A 794 - 680 794 171064 67 9 10 37 chain 4516 chr16 90354753 + 21785451 21785553 MLT1F2 592 + 0 103 200611 42 25 31 5 5 0 25 chain 16735 chr16 90354753 + 21814683 21814961 THE1A 353 + 25 301 136298 22 0 1 23 57 54 176 chain 26265 chr16 90354753 + 21821173 21821469 AluSp 311 - 15 311 98954 296 chain 45472 chr16 90354753 + 21834627 21835135 L1PA3long 6157 + 5650 6157 62524 502 1 0 5 chain 24989 chr16 90354753 + 21855454 21855760 AluSp 311 + 5 311 104861 306 chain 19926 chr16 90354753 + 21877225 21877528 THE1B 368 + 1 306 127373 168 1 0 28 37 0 9 0 40 60 chain 42766 chr16 90354753 + 21878009 21878856 MER41A 554 + 13 553 65699 52 0 1 367 308 0 120 chain 130591 chr16 90354753 + 21881062 21882569 L1PA5 6144 + 4622 6132 27945 672 3 5 680 10 11 142 chain 28805 chr16 90354753 + 21883192 21884277 LTR7B 505 + 0 503 89867 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 80 1 0 79 641 13 49 chain 3315 chr16 90354753 + 21883601 21883638 LTR7B 505 + 454 491 218672 37 chain 18108 chr16 90354753 + 21883822 21884105 LTR7B 505 + 0 327 132573 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 chain 7657 chr16 90354753 + 21884122 21884214 LTR7B 505 + 349 441 173179 16 1 0 23 0 1 52 chain 3712 chr16 90354753 + 21905954 21905997 Tigger4a 237 - 189 232 211769 43 chain 27264 chr16 90354753 + 21943556 21943870 AluYb8 318 - 1 318 95387 125 0 3 189 chain 17070 chr16 90354753 + 21954637 21954853 L1P3 4156 - 19 232 135401 21 1 0 9 2 0 183 chain 25134 chr16 90354753 + 21959365 21959664 AluSp 311 - 12 311 104098 299 chain 9038 chr16 90354753 + 21959675 21959780 MER50B 698 - 593 698 165406 105 chain 8923 chr16 90354753 + 21960030 21960545 MER4A 717 - 0 310 166013 67 386 181 62 chain 22461 chr16 90354753 + 21972997 21973273 AluSz 310 - 35 310 118194 164 3 2 109 chain 24145 chr16 90354753 + 21999324 21999608 AluSc5 308 - 6 288 109500 183 2 0 99 chain 3949 chr16 90354753 + 22039737 22039849 L1MB3 1562 - 10 120 208142 29 1 0 8 48 47 26 chain 21631 chr16 90354753 + 22044870 22045163 AluY 311 + 14 306 121653 82 2 4 18 5 0 14 4 5 99 0 1 69 chain 20560 chr16 90354753 + 22055157 22055520 THE1B 368 - 0 363 125433 56 7 6 63 11 19 10 0 4 10 1 0 5 20 11 8 0 2 58 8 4 64 6 7 36 chain 18309 chr16 90354753 + 22057211 22057423 L1PA4 6152 - 12 224 132052 212 chain 22162 chr16 90354753 + 22070780 22071153 THE1D 372 - 0 372 119534 74 0 1 72 1 0 25 14 16 52 0 4 37 33 34 10 10 1 17 1 0 14 0 2 13 chain 23571 chr16 90354753 + 22129735 22130001 AluY 311 + 11 277 112732 266 chain 30111 chr16 90354753 + 22165994 22166311 AluYb8 318 + 1 318 84452 317 chain 24198 chr16 90354753 + 22181395 22181677 AluSp 311 + 2 284 109226 282 chain 8003 chr16 90354753 + 22207030 22207113 tRNA-Leu-CTA 83 - 0 83 171039 83 chain 4602 chr16 90354753 + 22258419 22258479 MER39B 650 + 123 218 199596 14 0 35 46 chain 22693 chr16 90354753 + 22263986 22264349 THE1B 368 - 0 368 117110 62 2 0 66 0 8 14 43 41 60 8 9 108 chain 4809 chr16 90354753 + 22283529 22283827 L1MB7 1623 + 1364 1609 197244 11 1 0 45 191 145 14 6 0 6 1 2 10 1 0 12 chain 6643 chr16 90354753 + 22293536 22293644 MLT1A 405 - 65 191 180143 65 16 34 27 chain 7939 chr16 90354753 + 22308460 22308542 tRNA-Leu-CTY 82 + 0 82 171393 82 chain 10656 chr16 90354753 + 22321907 22322781 Tigger3b 1229 + 528 989 157585 16 4 5 14 2 0 8 0 2 6 649 191 101 27 72 5 1 0 41 chain 11411 chr16 90354753 + 22343726 22343889 MER107 203 + 0 157 154640 58 5 0 16 0 2 76 3 0 5 chain 21280 chr16 90354753 + 22352698 22352987 AluSx 319 + 10 299 122926 140 6 5 121 5 6 17 chain 52049 chr16 90354753 + 22362211 22362824 L1PA6 6164 - 10 638 57594 130 0 15 241 2 1 227 0 1 13 chain 2490 chr16 90354753 + 22370227 22370274 L1MA4 2864 + 2754 2799 233213 13 8 6 26 chain 9772 chr16 90354753 + 22415931 22416061 MER1A 529 + 389 525 161733 69 1 7 60 chain 6255 chr16 90354753 + 22418318 22418391 L1PA8 5853 + 5780 5853 183130 73 chain 25716 chr16 90354753 + 22423315 22423615 AluSp 311 - 1 301 101232 300 chain 5746 chr16 90354753 + 22487369 22487435 Tigger4a 237 + 5 71 187681 66 chain 28805 chr16 90354753 + 22509535 22510620 LTR7B 505 - 2 505 89869 49 641 13 79 1 0 80 0 2 28 34 27 12 0 38 60 0 10 12 0 3 50 1 2 38 chain 24681 chr16 90354753 + 22509598 22509990 LTR7B 505 - 64 505 106546 54 0 1 21 1 0 16 17 22 4 0 1 42 29 0 28 3 27 12 7 45 53 0 10 105 chain 3315 chr16 90354753 + 22510174 22510211 LTR7B 505 - 14 51 218675 37 chain 130460 chr16 90354753 + 22511243 22512750 L1PA5 6144 - 12 1522 27975 142 10 11 680 3 5 672 chain 42683 chr16 90354753 + 22514969 22515816 MER41A 554 - 1 541 65795 112 308 0 377 0 1 50 chain 24219 chr16 90354753 + 22515093 22515381 AluY 311 + 4 292 109098 288 chain 22553 chr16 90354753 + 22532427 22532701 AluSp 311 - 25 301 117795 9 0 2 265 chain 28249 chr16 90354753 + 22554999 22555454 LTR7B 505 - 2 505 92113 49 14 13 54 0 1 21 1 0 16 10 15 13 0 1 40 29 0 28 3 27 12 7 45 53 0 10 105 chain 3315 chr16 90354753 + 22555636 22555673 LTR7B 505 - 14 51 218674 37 chain 14736 chr16 90354753 + 22555687 22555875 LTR7B 505 - 64 253 142154 82 1 0 77 0 2 28 chain 11699 chr16 90354753 + 22559809 22560028 L1PB1 5432 - 12 210 153475 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 24 13 16 1 0 43 1 0 15 chain 17809 chr16 90354753 + 22569114 22569350 AluSc 308 + 11 282 133379 36 0 10 60 12 37 128 chain 8000 chr16 90354753 + 22600308 22600421 LTR8A 794 - 680 794 171063 67 9 10 37 chain 2502 chr16 90354753 + 22600848 22600972 LTR33 499 + 175 291 233117 20 50 48 20 22 16 12 chain 4516 chr16 90354753 + 22601594 22601696 MLT1F2 592 + 0 103 200610 42 25 31 5 5 0 25 chain 12008 chr16 90354753 + 22631784 22631930 L1PA5 6144 + 5992 6138 152164 146 chain 16138 chr16 90354753 + 22638279 22638626 LTR57 402 - 0 349 137941 15 24 20 125 103 109 80 chain 26104 chr16 90354753 + 22656719 22657152 L1PA15 4387 - 179 602 99605 5 1 0 18 1 0 46 11 10 25 1 0 99 0 1 71 14 16 6 1 0 17 9 7 49 9 5 21 2 0 27 chain 30508 chr16 90354753 + 22662452 22662804 L1PA5 6144 - 15 367 83411 352 chain 39606 chr16 90354753 + 22668296 22668722 L1PA2 6032 - 546 972 69882 426 chain 49637 chr16 90354753 + 22668722 22669254 L1PA2 6032 + 5496 6028 59287 532 chain 24528 chr16 90354753 + 22669903 22670204 AluYf5 307 + 8 307 107388 28 1 0 158 0 1 65 8 6 41 chain 6644 chr16 90354753 + 22671433 22671610 MER58A 224 - 9 182 180139 64 76 74 30 2 0 5 chain 3267 chr16 90354753 + 22692247 22692284 MIR 256 + 68 105 219632 37 chain 5771 chr16 90354753 + 22698641 22698711 LTR47A 437 - 52 122 187433 70 chain 72253 chr16 90354753 + 22711274 22712047 L1HS 6032 - 0 771 47354 5 2 0 766 chain 16275 chr16 90354753 + 22725930 22726186 L1PA15 4387 - 231 487 137541 17 15 14 17 11 10 107 0 3 56 1 0 32 chain 27664 chr16 90354753 + 22729751 22730174 L1PA8 5853 - 0 405 94169 89 18 4 19 2 1 40 27 25 65 2 0 46 1 0 89 1 3 24 chain 4719 chr16 90354753 + 22730176 22730245 L1P3 4156 + 4073 4139 198283 34 2 0 9 2 1 22 chain 3715 chr16 90354753 + 22730308 22730353 MADE1 96 - 51 96 211704 45 chain 5306 chr16 90354753 + 22734001 22734062 LTR12C 1709 - 991 1052 191961 61 chain 11653 chr16 90354753 + 22734088 22734224 LTR12C 1709 - 641 777 153685 136 chain 11116 chr16 90354753 + 22735380 22735526 L1PA7 6471 + 6325 6470 155751 130 4 3 12 chain 28269 chr16 90354753 + 22752384 22752724 L1PA7 6471 - 2 345 92048 159 1 2 95 0 2 85 chain 52286 chr16 90354753 + 22778995 22779660 L1PA8 5853 + 5195 5853 57435 369 1 0 44 2 0 74 13 11 47 2 1 19 2 1 92 chain 20698 chr16 90354753 + 22789555 22789939 L1PB1 5432 - 33 383 124973 7 1 0 22 1 0 24 2 0 14 1 0 5 6 4 12 9 0 15 3 0 15 1 0 45 2 1 13 3 2 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 3 0 11 1 0 54 chain 23021 chr16 90354753 + 22796819 22797236 MSTB 430 - 0 430 115524 122 1 6 32 25 26 12 8 0 15 4 16 26 22 24 59 13 14 78 chain 21999 chr16 90354753 + 22802330 22802586 L1PA5 6144 + 5869 6125 120233 256 chain 5599 chr16 90354753 + 22807947 22808146 L1MA6 2487 - 95 242 189086 14 3 0 38 91 45 4 1 0 9 4 0 3 0 2 32 chain 22422 chr16 90354753 + 22852133 22852390 L1PA4 6152 - 0 254 118365 5 3 0 249 chain 16598 chr16 90354753 + 22855830 22856166 MSTA 426 + 1 362 136675 103 20 44 32 4 8 13 7 5 30 41 21 19 1 0 20 1 21 45 chain 23764 chr16 90354753 + 22871425 22871784 THE1B 368 - 0 368 111686 114 28 30 10 5 9 5 1 0 31 1 0 135 0 5 29 chain 46286 chr16 90354753 + 22887508 22888439 L1PB1 5432 + 4556 5422 61783 40 28 10 8 0 16 44 2 0 120 49 4 54 22 32 40 0 6 168 6 7 9 3 0 24 1 0 4 43 36 42 2 1 15 1 0 22 9 10 12 1 0 16 3 0 8 17 8 14 3 1 5 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 chain 7582 chr16 90354753 + 22905018 22905112 L1PA8 5853 + 5575 5668 173655 33 2 0 26 0 1 33 chain 19142 chr16 90354753 + 22958046 22958408 THE1B 368 - 0 368 129703 56 7 6 63 62 68 40 23 24 111 chain 26527 chr16 90354753 + 22988950 22989242 L1PA4 6152 + 5859 6152 97941 149 0 1 143 chain 3215 chr16 90354753 + 22989523 22989624 MLT1A 405 - 33 150 220660 27 51 67 23 chain 18775 chr16 90354753 + 23013207 23013483 L1PB2 3958 - 159 429 130758 24 1 0 13 17 16 67 1 0 61 1 0 78 2 0 11 chain 14522 chr16 90354753 + 23039222 23039498 L1PB1 5432 - 12 265 142820 16 1 0 13 1 0 21 1 0 24 2 0 9 5 0 6 1 4 29 16 2 16 1 0 11 0 1 25 7 6 16 2 1 53 chain 23753 chr16 90354753 + 23056754 23057119 L1PB4 2604 + 2188 2552 111758 76 12 13 106 10 0 94 11 19 56 chain 3855 chr16 90354753 + 23064871 23065043 L1MC4a 1092 + 486 665 209560 17 111 118 44 chain 439000 chr16 90354753 + 23105200 23110324 L1P2 5180 + 2 5175 9080 112 0 1 35 1 0 50 1 0 47 1 0 268 1 0 50 1 0 218 0 15 291 0 1 86 0 11 61 1 0 322 1 0 254 0 1 50 0 1 312 0 2 16 0 2 111 1 0 105 1 0 115 0 3 247 1 0 169 0 2 229 1 0 103 0 1 208 0 2 52 0 15 125 0 1 267 0 2 707 0 2 416 2 1 44 2 1 39 chain 24808 chr16 90354753 + 23124077 23124377 AluSp 311 + 10 302 105846 284 8 0 8 chain 6960 chr16 90354753 + 23162893 23162972 LTR12F 595 - 114 193 177750 79 chain 23541 chr16 90354753 + 23164723 23164988 AluSc 308 - 27 293 112897 251 0 1 14 chain 42943 chr16 90354753 + 23170049 23170596 MLT2A2 560 + 0 560 65486 183 1 0 216 3 14 72 0 3 72 chain 3180 chr16 90354753 + 23174164 23174205 MADE1 96 - 54 96 221346 15 0 1 26 chain 11575 chr16 90354753 + 23201407 23201569 L1PA8 5853 + 5693 5853 154007 47 2 1 15 6 5 92 chain 3337 chr16 90354753 + 23247858 23247913 L1MC1 2226 + 2135 2188 218284 14 4 3 32 1 0 4 chain 23080 chr16 90354753 + 23250260 23250606 THE1C 375 - 20 374 115244 5 1 0 99 11 7 10 10 22 21 1 0 4 0 1 45 1 5 11 3 0 124 chain 12416 chr16 90354753 + 23266232 23266431 L1PA16 3655 - 103 293 150573 11 0 1 65 14 10 62 10 4 37 chain 28075 chr16 90354753 + 23283625 23283927 AluYh9 303 - 0 302 92742 302 chain 14370 chr16 90354753 + 23285304 23285488 MER30 238 + 47 238 143305 63 4 14 75 3 0 39 chain 66108 chr16 90354753 + 23310918 23311663 L1PA7 6471 + 5716 6461 50050 745 chain 32814 chr16 90354753 + 23320659 23321165 MLT2A1 477 - 0 477 79508 39 81 54 73 0 1 140 6 3 167 chain 3381 chr16 90354753 + 23325777 23325817 MIR 256 - 142 182 217445 40 chain 13723 chr16 90354753 + 23353885 23354061 MER30 238 - 1 201 145531 101 1 25 74 chain 4241 chr16 90354753 + 23381162 23381213 MIR 256 + 103 154 203990 51 chain 24718 chr16 90354753 + 23430444 23430747 AluSp 311 + 0 297 106338 109 8 2 186 chain 22352 chr16 90354753 + 23460796 23461088 AluSp 311 + 14 298 118690 92 0 2 144 11 1 45 chain 4092 chr16 90354753 + 23525728 23525776 MER39 703 + 579 627 206048 48 chain 29086 chr16 90354753 + 23528544 23528849 AluYa5 310 - 5 310 88612 305 chain 4836 chr16 90354753 + 23554052 23554111 MLT1F2 592 + 57 116 196959 59 chain 23618 chr16 90354753 + 23562962 23563245 AluY 311 + 4 287 112483 129 1 0 41 1 2 111 chain 8677 chr16 90354753 + 23590348 23590512 L1PA15 4387 + 4133 4290 167320 32 3 5 15 1 0 18 22 17 50 3 0 20 chain 125562 chr16 90354753 + 23594109 23595595 SVA_C 1631 + 0 1631 29224 36 0 5 403 76 0 397 0 216 574 chain 21827 chr16 90354753 + 23596842 23597103 L1PA6 6164 - 7 268 120911 261 chain 19649 chr16 90354753 + 23597695 23597953 AluSg7 307 - 50 307 128254 10 2 0 118 1 2 127 chain 3634 chr16 90354753 + 23601683 23601743 MIR 256 + 82 143 213060 22 7 8 31 chain 74352 chr16 90354753 + 23610804 23611764 LTR5_Hs 974 + 0 974 46332 115 5 13 161 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 28639 chr16 90354753 + 23625966 23626270 AluYa5 310 - 6 310 90565 304 chain 14101 chr16 90354753 + 23666093 23666304 L1MA4 2864 - 179 389 144215 15 3 0 15 8 11 145 3 2 22 chain 26190 chr16 90354753 + 23715599 23715949 THE1B 368 + 0 368 99240 44 7 22 38 1 6 62 1 0 22 1 0 99 1 0 62 0 1 12 chain 89549 chr16 90354753 + 23733530 23734644 MER11A 1151 + 7 1151 39797 105 0 1 63 8 0 23 2 0 95 0 2 85 2 1 302 0 1 58 0 4 58 1 0 14 1 36 4 1 0 292 chain 48183 chr16 90354753 + 23754834 23755416 LTR66 600 - 0 600 60336 47 0 2 46 0 16 489 chain 33423 chr16 90354753 + 23769070 23769536 MER1A 529 - 0 488 78528 32 0 16 14 9 11 230 8 9 122 1 0 5 6 10 39 chain 191074 chr16 90354753 + 23788190 23790327 L1PA5 6144 - 5 2143 19953 813 0 2 37 1 0 1286 chain 23750 chr16 90354753 + 23795138 23795406 L1PA2 6032 - 2 270 111774 268 chain 4631 chr16 90354753 + 23795450 23795503 L1PA3long 6157 + 5856 5909 199295 53 chain 14471 chr16 90354753 + 23799447 23799652 MER41E 591 - 387 591 142982 36 11 12 29 1 0 58 1 0 69 chain 12029 chr16 90354753 + 23801812 23802066 LTR51 675 + 150 433 152079 30 76 103 27 1 2 93 2 3 25 chain 3252 chr16 90354753 + 23853533 23853603 MIRb 242 + 69 140 219965 20 24 25 26 chain 39617 chr16 90354753 + 23874064 23874810 MER41C 542 + 0 542 69868 49 0 1 259 242 37 196 chain 3829 chr16 90354753 + 23933668 23933713 MER102c 337 - 176 221 209955 45 chain 5424 chr16 90354753 + 23938015 23938079 L1PB4 2604 - 230 294 190762 64 chain 8034 chr16 90354753 + 23998470 23998563 L1PA8 5853 + 5760 5853 170842 93 chain 18019 chr16 90354753 + 24038321 24038589 L1PA7 6471 - 4 266 132804 6 4 0 26 0 9 8 10 1 82 0 5 118 7 0 7 chain 8740 chr16 90354753 + 24055940 24056059 MER58A 224 + 37 152 166981 100 4 0 15 chain 3479 chr16 90354753 + 24081995 24082034 MIR 256 - 124 163 215680 39 chain 25880 chr16 90354753 + 24090287 24090641 LTR7B 505 + 0 505 100530 105 0 10 56 13 81 26 0 74 89 15 14 50 chain 38203 chr16 90354753 + 24116700 24117198 L1PA8 5853 - 0 498 71833 67 0 1 24 19 17 56 2 1 5 1 0 52 0 6 16 2 0 46 1 0 207 chain 152034 chr16 90354753 + 24119681 24121416 SVA_F 1814 - 11 1814 24331 5 0 1 835 46 33 4 1 0 44 0 1 37 0 80 763 chain 3228 chr16 90354753 + 24120521 24120567 SVA_F 1814 - 725 771 120655 46 chain 17504 chr16 90354753 + 24163413 24163754 THE1B 368 - 0 368 134253 56 4 6 17 0 16 14 0 2 17 0 8 18 65 63 28 16 17 106 chain 25898 chr16 90354753 + 24200682 24200986 AluY 311 + 5 306 100449 131 3 0 170 chain 27262 chr16 90354753 + 24213074 24213385 AluYk4 311 + 0 310 95395 118 1 0 192 chain 41109 chr16 90354753 + 24245308 24245858 MER41A 554 - 0 554 67760 73 14 15 57 1 3 217 4 5 184 chain 24256 chr16 90354753 + 24251754 24252101 THE1B 368 - 11 368 108909 85 1 0 80 2 0 24 2 0 78 31 46 44 chain 14447 chr16 90354753 + 24260238 24260417 L1PB4 2604 - 428 607 143054 179 chain 20432 chr16 90354753 + 24316846 24317132 L1PA8 5853 + 5563 5853 125804 43 2 9 63 2 1 65 6 5 11 1 0 93 chain 3916 chr16 90354753 + 24331370 24331414 MER65A 464 - 420 464 208615 44 chain 3815 chr16 90354753 + 24384670 24384829 MER20 218 - 36 180 210158 18 98 84 25 1 0 17 chain 4068 chr16 90354753 + 24385010 24385059 MIR 256 + 89 138 206332 49 chain 85417 chr16 90354753 + 24385715 24386721 LTR13 1007 - 0 1007 41375 270 0 1 237 1 2 49 1 0 62 4 5 75 2 1 305 chain 5549 chr16 90354753 + 24392916 24393005 LTR10B1 532 - 5 99 189579 4 0 1 32 9 13 44 chain 4557 chr16 90354753 + 24411377 24411437 U7 62 - 0 61 200133 5 0 2 4 1 0 50 chain 5688 chr16 90354753 + 24416643 24416715 LTR47A 437 + 8 80 188222 72 chain 120146 chr16 90354753 + 24437595 24439381 L1MA2 4263 - 172 1993 31010 22 18 11 7 0 9 77 12 9 134 36 33 17 0 18 92 1 0 66 0 1 9 11 7 19 0 1 97 6 9 31 0 2 376 19 1 134 0 1 47 8 1 90 0 1 32 1 9 38 10 13 20 21 13 32 0 1 19 0 1 5 0 37 10 1 0 137 0 1 72 0 1 6 1 0 52 chain 11113 chr16 90354753 + 24452393 24452528 LTR45 522 + 263 398 155764 135 chain 29936 chr16 90354753 + 24460948 24461323 THE1C 375 - 0 375 85006 26 1 0 164 1 0 4 0 1 70 3 4 106 chain 23223 chr16 90354753 + 24476390 24476769 MSTA 426 - 0 426 114576 72 0 1 39 0 20 29 34 32 77 29 57 99 chain 6222 chr16 90354753 + 24507539 24507611 LTR39 781 - 658 730 183391 72 chain 6943 chr16 90354753 + 24536682 24536864 L1MB2 1706 - 14 171 177871 67 79 52 29 0 2 7 chain 22941 chr16 90354753 + 24538855 24539144 AluSp 311 - 24 311 115902 80 13 11 196 chain 5195 chr16 90354753 + 24542897 24543065 L1MC4 1079 + 385 551 193085 32 91 89 45 chain 5303 chr16 90354753 + 24545106 24545189 L1MC2 1988 + 1573 1651 191986 16 13 8 54 chain 132107 chr16 90354753 + 24584811 24587131 SVA_C 1631 - 3 1629 27616 18 1 0 335 0 4 228 1 0 7 0 91 66 0 1 8 14 15 130 790 0 683 14 7 10 0 8 15 chain 6157 chr16 90354753 + 24585619 24585738 SVA_C 1631 - 786 903 134422 18 2 0 99 chain 28637 chr16 90354753 + 24585807 24586216 SVA_F 1814 - 977 1386 90569 284 1 41 39 11 0 8 16 0 4 13 0 33 chain 3040 chr16 90354753 + 24586276 24586319 SVA_C 1631 - 812 855 224202 43 chain 12962 chr16 90354753 + 24601815 24601962 L1PA4 6152 + 5996 6143 148380 147 chain 18655 chr16 90354753 + 24611072 24611323 L1PB 1623 - 1284 1525 131066 66 2 0 4 0 1 77 2 0 4 1 0 16 3 0 54 2 0 15 1 0 4 chain 26498 chr16 90354753 + 24636791 24637083 AluYb8 318 + 27 313 98050 96 1 0 164 5 0 26 chain 6748 chr16 90354753 + 24663190 24663281 FLAM_A 137 + 52 137 179341 79 6 0 6 chain 23328 chr16 90354753 + 24671418 24671885 L1PB1 5432 - 9 427 114044 5 2 0 14 1 0 13 1 0 19 3 2 24 2 0 15 1 0 4 2 0 28 10 0 3 3 0 14 6 5 41 1 0 15 2 1 53 16 10 11 1 0 8 1 0 24 5 0 11 13 12 48 15 6 32 chain 24487 chr16 90354753 + 24690315 24690617 AluSp 311 - 9 311 107619 21 6 5 256 0 1 19 chain 10812 chr16 90354753 + 24720604 24720756 L1PB2 3958 - 216 362 156931 60 2 1 23 4 0 40 1 0 22 chain 2931 chr16 90354753 + 24722987 24723021 L1ME1 1623 - 138 172 226493 34 chain 3677 chr16 90354753 + 24901349 24901391 LTR48B 642 - 59 101 212281 42 chain 24294 chr16 90354753 + 24908896 24909258 THE1B 368 - 6 368 108682 32 1 2 16 1 6 113 23 16 59 6 7 111 chain 7129 chr16 90354753 + 24915047 24915141 L1MA5 2750 - 166 259 176550 22 1 0 71 chain 25241 chr16 90354753 + 24915189 24915577 THE1D 372 - 0 372 103530 32 1 0 147 26 28 41 11 13 36 19 0 75 chain 23126 chr16 90354753 + 24916110 24916419 L1PA8 5853 - 4 306 115018 88 2 1 17 6 5 45 1 0 14 2 1 70 2 0 46 1 0 15 chain 3952 chr16 90354753 + 25004575 25004622 MADE1 96 - 1 48 208107 47 chain 7653 chr16 90354753 + 25057218 25057312 MER67A 545 - 450 545 173209 58 0 1 36 chain 104324 chr16 90354753 + 25069548 25070796 LTR12C 1709 - 9 1709 35662 75 1 0 64 1 0 20 0 102 98 2 1 112 0 4 65 0 47 75 0 1 91 0 7 6 0 270 43 4 28 591 chain 5010 chr16 90354753 + 25074326 25074388 MSTA 426 + 364 426 195017 62 chain 20058 chr16 90354753 + 25112905 25113146 AluSp 311 - 14 254 126943 16 0 1 148 2 0 75 chain 24493 chr16 90354753 + 25124185 25124481 AluSg 306 + 4 300 107576 296 chain 18299 chr16 90354753 + 25140044 25140290 L1PA8 5853 + 5506 5751 132078 60 0 2 41 2 0 43 0 1 25 2 1 61 2 1 10 chain 14419 chr16 90354753 + 25140314 25140495 L1PA8A 6298 - 121 306 143155 36 0 1 78 4 7 63 chain 8094 chr16 90354753 + 25147793 25147892 L1PA7 6471 - 2 108 170524 10 0 7 89 chain 64655 chr16 90354753 + 25192152 25194268 Tigger1 2417 + 392 1585 50721 69 16 6 15 0 1 41 316 0 37 0 4 41 2 1 339 4 0 128 28 25 83 878 284 119 chain 10771 chr16 90354753 + 25205605 25205723 L1PA4 6152 - 0 118 157106 118 chain 24136 chr16 90354753 + 25214866 25215161 AluSp 311 - 6 301 109545 295 chain 28994 chr16 90354753 + 25222715 25223023 AluYa5 310 - 2 310 89016 308 chain 8862 chr16 90354753 + 25226317 25226555 L1MB3 1562 - 12 229 166317 27 1 0 10 0 1 15 95 76 14 0 1 51 2 0 4 1 0 18 chain 12754 chr16 90354753 + 25233555 25233699 SVA_F 1814 + 1671 1812 149239 126 3 0 15 chain 55083 chr16 90354753 + 25270117 25270891 MER4E1 777 - 0 759 55655 13 11 13 117 1 3 35 0 4 44 1 0 321 34 12 50 1 2 137 1 0 8 chain 3672 chr16 90354753 + 25284912 25284954 MER4E1 777 - 72 114 212352 42 chain 5430 chr16 90354753 + 25304102 25304165 MER30B 195 + 132 195 190709 63 chain 31983 chr16 90354753 + 25305828 25306168 L1HS 6032 + 5691 6031 80888 340 chain 3301 chr16 90354753 + 25319031 25319072 L1MD2 1676 + 1383 1426 218952 17 0 2 24 chain 13826 chr16 90354753 + 25322812 25323018 MLT2A1 477 - 255 466 145159 33 22 26 22 0 1 129 chain 28385 chr16 90354753 + 25324105 25324499 MLT2A1 477 - 78 477 91645 210 22 26 22 0 1 19 0 1 6 1 0 114 chain 2793 chr16 90354753 + 25326118 25326148 L1PA6 6164 - 5 35 228826 30 chain 18656 chr16 90354753 + 25327019 25327375 L1PA13 3608 + 3226 3552 131063 47 2 0 62 2 1 50 1 0 9 6 4 45 8 4 18 8 7 20 3 0 11 5 0 14 1 0 6 7 1 10 1 0 1 2 0 12 1 0 4 chain 4737 chr16 90354753 + 25338188 25338252 MER75A 77 - 0 77 198092 27 1 0 8 0 14 28 chain 5948 chr16 90354753 + 25347404 25347481 MSTA 426 + 321 399 185693 41 0 1 36 chain 80273 chr16 90354753 + 25348242 25349104 L1PA2 6032 - 0 863 43481 144 0 1 718 chain 11465 chr16 90354753 + 25351878 25352041 THE1B 368 - 204 368 154452 86 17 18 60 chain 11127 chr16 90354753 + 25352091 25352240 L1PA16 3655 + 3376 3526 155709 39 5 6 105 chain 27878 chr16 90354753 + 25357309 25357686 THE1C 375 - 0 375 93427 16 10 9 160 6 5 185 chain 1206 chr16 90354753 + 25369807 25369863 LTR2 463 + 0 57 80395 49 0 1 7 chain 41085 chr16 90354753 + 25369870 25370327 L1PA4 6152 - 502 961 67786 271 0 2 186 chain 46927 chr16 90354753 + 25370327 25370844 L1PA4 6152 + 5636 6152 61285 369 1 0 147 chain 8463 chr16 90354753 + 25370913 25371306 LTR2 463 + 73 463 80395 257 4 2 48 4 5 26 1 0 28 1 0 24 chain 29645 chr16 90354753 + 25379427 25380676 L1PA16 3655 - 90 568 86091 133 785 16 57 1 4 9 3 0 56 2 0 51 39 39 113 chain 7880 chr16 90354753 + 25379566 25379845 MER61C 433 + 0 289 121860 13 0 15 17 0 1 4 1 0 62 53 52 47 2 0 32 2 0 46 chain 23338 chr16 90354753 + 25379902 25380192 AluSq2 311 + 11 297 113992 114 1 0 9 3 0 163 chain 2824 chr16 90354753 + 25380230 25380330 MER61C 433 + 335 433 121860 64 1 0 23 1 0 11 chain 16481 chr16 90354753 + 25382636 25382878 MER87 546 - 299 536 136981 58 1 0 4 1 2 124 22 17 32 chain 28083 chr16 90354753 + 25384843 25385230 MER51B 395 - 14 387 92700 116 21 20 205 13 0 32 chain 8725 chr16 90354753 + 25387031 25387135 MER50 708 - 22 126 167061 104 chain 37385 chr16 90354753 + 25391034 25391516 MER9a3 513 + 15 513 72980 95 0 1 49 1 0 98 0 17 154 6 7 20 2 0 57 chain 56376 chr16 90354753 + 25397373 25398029 L1PA7 6471 - 4 660 54917 8 2 0 457 1 3 188 chain 25854 chr16 90354753 + 25407820 25408109 L1PA5 6144 - 5 293 100634 107 1 0 181 chain 65395 chr16 90354753 + 25461723 25462474 L1PA7 6471 - 1 752 50379 751 chain 12780 chr16 90354753 + 25466691 25466854 L1PB 1623 + 1308 1469 149135 138 1 0 7 2 1 15 chain 25395 chr16 90354753 + 25481319 25481740 L1PA8 5853 + 5495 5853 102708 69 1 0 21 1 0 25 2 0 67 26 24 13 56 0 26 2 1 19 1 0 74 0 1 18 chain 6833 chr16 90354753 + 25489983 25490094 MLT1F 544 + 322 451 178706 19 8 17 56 3 12 25 chain 8354 chr16 90354753 + 25493485 25493613 MER85 139 - 0 135 169101 19 19 26 90 chain 16045 chr16 90354753 + 25514389 25514558 L1HS 6032 - 0 169 138225 169 chain 14161 chr16 90354753 + 25521409 25521593 L1PA8 5853 + 5672 5853 144009 7 1 0 14 1 0 47 2 1 112 chain 32756 chr16 90354753 + 25535940 25536446 L1MA4 2864 - 165 671 79604 6 1 0 194 3 2 122 8 9 32 3 0 36 14 7 54 20 31 13 chain 29379 chr16 90354753 + 25539626 25540003 THE1C 375 + 0 375 87175 125 9 6 49 0 1 194 chain 28387 chr16 90354753 + 25547387 25547800 MSTB-int 1649 + 0 421 91638 153 16 11 100 35 48 109 chain 536314 chr16 90354753 + 25567164 25573587 L1PA7 6471 + 0 6444 3409 411 0 2 749 0 1 193 0 1 130 1 2 197 6 3 570 0 2 371 5 0 893 1 0 360 0 1 416 2 1 662 5 1 504 0 25 126 1 0 12 0 1 159 0 1 457 0 1 55 1 6 6 5 0 125 chain 29859 chr16 90354753 + 25582644 25583066 LTR7B 505 - 10 505 85243 41 14 13 54 0 1 20 2 1 84 1 3 26 3 27 12 0 38 57 0 10 108 chain 4809 chr16 90354753 + 25584442 25584683 L1MA8 2339 + 2036 2263 197242 30 144 133 29 7 5 24 1 0 6 chain 42941 chr16 90354753 + 25589602 25590118 LTR10C 591 - 0 591 65489 81 0 2 151 0 1 178 4 76 102 chain 13530 chr16 90354753 + 25590795 25590994 MER41A 554 + 4 554 146245 58 1 351 108 1 0 4 0 1 7 5 6 15 chain 11175 chr16 90354753 + 25606383 25606520 L1PA6 6164 - 244 382 155541 93 3 4 41 chain 34191 chr16 90354753 + 25606879 25607297 L1PA6 6164 - 5 424 77362 39 0 1 379 chain 20800 chr16 90354753 + 25607297 25607545 L1PA6 6164 + 5914 6162 124598 248 chain 282235 chr16 90354753 + 25612507 25615799 L1PA6 6164 - 2 3329 14523 165 4 5 442 0 9 12 0 11 583 0 5 251 1 0 308 0 8 104 2 1 199 0 1 834 2 1 5 0 2 26 0 1 354 chain 22512 chr16 90354753 + 25618761 25619015 L1PA4 6152 - 11 259 117974 204 6 0 44 chain 79064 chr16 90354753 + 25621924 25622977 MER11C 1089 - 25 1089 44024 150 1 0 50 0 1 125 0 1 34 11 13 107 56 51 211 0 4 62 0 9 246 chain 27699 chr16 90354753 + 25623571 25623861 AluYa5 310 - 0 290 94046 290 chain 49011 chr16 90354753 + 25628475 25629110 L1PA8 5853 - 0 629 59739 92 2 1 16 8 7 42 9 8 5 1 0 74 2 0 15 0 1 30 1 0 338 chain 11284 chr16 90354753 + 25634885 25635546 L1PB1 5432 + 5121 5430 155113 17 1 0 8 1 0 11 18 12 51 2 1 15 1 0 22 414 79 9 2 0 24 1 0 21 2 1 12 1 0 17 1 0 5 1 0 4 chain 11457 chr16 90354753 + 25638323 25638468 LTR26 622 + 0 145 154478 145 chain 15938 chr16 90354753 + 25656707 25656901 L1PA4 6152 + 5953 6152 138553 188 0 5 6 chain 16298 chr16 90354753 + 25691337 25691516 L1PA3long 6157 + 5972 6151 137487 179 chain 50136 chr16 90354753 + 25695756 25696655 L1PA5 6144 + 5518 6130 58915 153 311 0 202 0 24 233 chain 17019 chr16 90354753 + 25717724 25717945 L1PA8 5853 - 0 242 135541 33 0 25 35 1 0 19 2 1 52 1 0 9 1 0 68 chain 29889 chr16 90354753 + 25726361 25726681 AluYb8 318 + 0 318 85137 305 2 0 13 chain 26367 chr16 90354753 + 25755954 25756311 THE1B 368 + 0 368 98546 44 0 15 109 1 0 4 2 1 8 1 0 104 9 8 75 chain 4991 chr16 90354753 + 25772083 25772175 MLT1B 390 - 305 390 195233 51 25 18 16 chain 19491 chr16 90354753 + 25782313 25782588 L1PA8 5853 - 6 275 128680 86 2 1 68 1 0 11 7 6 67 2 0 5 4 3 22 chain 30724 chr16 90354753 + 25787567 25787954 MER4A1 472 + 26 451 82995 5 1 0 195 19 58 167 chain 11362 chr16 90354753 + 25822584 25822739 Tigger2 2703 + 2352 2501 154852 19 6 0 130 chain 26702 chr16 90354753 + 25822743 25823053 AluSp 311 - 1 311 97315 310 chain 27035 chr16 90354753 + 25840739 25841109 L1PA8 5853 - 0 364 96161 93 1 0 13 9 8 57 1 0 74 2 0 44 1 0 75 chain 22943 chr16 90354753 + 25852370 25852625 AluYf4 310 - 55 310 115897 255 chain 5647 chr16 90354753 + 25867272 25867342 L1MCb 1641 - 1166 1235 188589 7 1 0 62 chain 8188 chr16 90354753 + 25873272 25873470 MER1B 344 - 0 202 170023 39 4 0 19 37 38 5 5 0 59 17 29 13 chain 35285 chr16 90354753 + 25877681 25878142 L1PA8 5853 + 5399 5853 75810 165 1 0 44 2 0 70 19 17 45 2 1 19 1 0 93 chain 20594 chr16 90354753 + 25946213 25946569 THE1D 372 + 2 372 125320 11 0 2 38 29 30 97 8 11 11 36 44 126 chain 4783 chr16 90354753 + 25995465 25995527 L1MA5A 2387 - 87 148 197545 5 1 0 56 chain 24457 chr16 90354753 + 25998400 25998683 AluSp 311 + 11 295 107770 194 0 1 89 chain 7619 chr16 90354753 + 26040232 26040322 5S 121 + 0 90 173417 90 chain 73112 chr16 90354753 + 26080881 26081703 L1PA5 6144 - 2 824 46973 822 chain 3079 chr16 90354753 + 26094182 26094217 MLT1I 406 + 319 354 223353 35 chain 529413 chr16 90354753 + 26103942 26110062 L1PA6 6164 + 0 6162 4254 113 0 1 81 0 1 4 1 0 18 0 1 300 0 2 46 1 0 287 0 1 219 0 1 1258 0 1 130 1 0 725 0 1 281 0 22 30 0 1 429 1 0 225 0 13 487 0 1 1483 chain 16909 chr16 90354753 + 26116412 26116621 L1PA16 3655 + 3335 3544 135826 209 chain 4689 chr16 90354753 + 26128258 26128310 Tigger4a 237 + 170 222 198653 52 chain 23195 chr16 90354753 + 26154779 26155096 L1PA8 5853 + 5542 5851 114695 22 2 1 44 2 0 73 9 6 54 1 0 18 1 0 91 chain 9777 chr16 90354753 + 26164184 26164309 L1PB4 2604 + 2215 2340 161712 125 chain 6130 chr16 90354753 + 26172555 26172639 MER30 238 - 0 81 184180 48 5 2 31 chain 4846 chr16 90354753 + 26191227 26191346 L1MC4 1079 + 747 865 196826 20 1 0 37 37 38 14 1 0 9 chain 5094 chr16 90354753 + 26240346 26240400 L1PA2 6032 - 263 317 194143 54 chain 24441 chr16 90354753 + 26240400 26240661 L1PA2 6032 + 5771 6032 107857 261 chain 9037 chr16 90354753 + 26277671 26277784 L1PA8 5853 - 0 112 165408 93 1 0 19 chain 93137 chr16 90354753 + 26289533 26290857 L1PBa 3878 - 2493 3777 38619 325 3 1 75 3 0 4 1 0 314 1 0 140 1 0 292 12 10 12 99 69 42 chain 10575 chr16 90354753 + 26319093 26319231 L1PA8 5853 + 5717 5853 157934 23 2 1 19 1 0 93 chain 12878 chr16 90354753 + 26334749 26334944 L1MA3 4352 + 4114 4306 148711 81 3 0 16 0 8 16 4 0 26 2 0 21 1 0 6 1 0 18 chain 2793 chr16 90354753 + 26338429 26338459 L1MA4 2864 - 60 90 228822 30 chain 3057 chr16 90354753 + 26346430 26346466 MADE1 96 - 59 95 223861 36 chain 19103 chr16 90354753 + 26354842 26355178 THE1D 372 + 0 344 129809 13 0 2 41 32 23 90 26 25 23 0 1 7 6 21 98 chain 32807 chr16 90354753 + 26381339 26381786 MLT2A2 560 - 0 560 79521 55 0 1 43 0 5 44 0 109 125 12 10 168 chain 131516 chr16 90354753 + 26413478 26414994 L1PA5 6144 - 16 1565 27742 86 0 4 23 0 1 720 2 0 18 1 5 184 0 26 482 chain 238165 chr16 90354753 + 26419846 26422656 L1PA6 6164 - 2 2822 16871 8 2 0 129 2 0 5 0 2 703 2 0 18 0 4 318 1 0 123 7 8 474 0 4 198 5 10 95 0 1 720 chain 21244 chr16 90354753 + 26423503 26423748 L1PA4 6152 + 5906 6151 123042 245 chain 512059 chr16 90354753 + 26430569 26436707 L1PA6 6164 + 4 6157 5972 393 16 15 106 5 6 694 13 14 121 1 2 976 1 3 212 0 3 578 0 1 62 0 1 18 16 15 479 0 1 592 0 1 1036 1 2 68 0 1 430 0 1 71 0 2 249 chain 18551 chr16 90354753 + 26462811 26463215 MSTA 426 - 0 408 131354 105 16 21 42 118 119 59 8 6 56 chain 52369 chr16 90354753 + 26485480 26486171 LTR12 884 - 0 884 57383 175 1 103 155 6 7 67 3 1 88 1 26 21 0 1 18 0 66 156 chain 29419 chr16 90354753 + 26495366 26495676 AluYa5 310 - 0 310 86992 310 chain 43008 chr16 90354753 + 26497998 26498550 MER41A 554 + 0 554 65406 165 1 0 153 3 0 6 0 2 79 9 13 136 chain 34941 chr16 90354753 + 26554023 26554501 MLT2A1 477 - 0 477 76277 38 8 0 10 2 0 14 2 0 5 7 19 6 0 2 213 4 1 169 chain 28603 chr16 90354753 + 26570043 26570372 L1PA7 6471 + 6140 6469 90720 329 chain 4386 chr16 90354753 + 26585662 26585714 MLT1D 503 + 432 485 202127 33 0 1 19 chain 14605 chr16 90354753 + 26586688 26586860 L1PA4 6152 + 5978 6151 142565 23 1 2 148 chain 29959 chr16 90354753 + 26608043 26608365 AluYb8 318 - 0 318 84943 195 4 0 123 chain 42632 chr16 90354753 + 26620136 26620679 MER41A 554 - 9 554 65859 199 12 14 332 chain 279045 chr16 90354753 + 26628403 26632073 L1PB1 5432 - 18 3684 14692 9 2 1 13 1 0 21 1 0 24 2 0 19 7 5 25 14 1 12 11 10 37 1 0 18 1 0 6 0 1 4 1 0 39 2 0 11 6 2 9 1 0 9 1 0 22 6 0 7 1 6 305 0 1 126 0 1 49 3 0 22 2 0 478 0 1 37 0 7 52 0 3 295 0 6 449 5 7 515 11 40 161 0 1 50 27 9 90 0 1 132 1 0 517 chain 116995 chr16 90354753 + 26642409 26644041 THE1B-int 1605 - 5 1605 32126 36 16 15 250 18 15 8 0 1 199 3 0 5 0 3 309 14 15 221 1 0 66 0 25 36 0 1 140 6 5 94 54 0 156 chain 12318 chr16 90354753 + 26646476 26646609 L1PA3long 6157 - 371 504 150947 133 chain 30470 chr16 90354753 + 26646622 26646981 L1PA3long 6157 + 5798 6157 83488 169 0 1 4 1 0 185 chain 3562 chr16 90354753 + 26656286 26656335 MADE1 96 + 46 94 214281 24 1 0 24 chain 16528 chr16 90354753 + 26685432 26686060 Tigger2 2703 - 55 359 136840 96 0 2 10 17 6 35 5 8 19 339 17 70 3 9 7 3 0 6 0 1 18 chain 29664 chr16 90354753 + 26694274 26694671 MLT2A1 477 - 77 477 85987 15 4 0 173 20 21 17 1 5 119 0 2 48 chain 127259 chr16 90354753 + 26696384 26697827 L1PA4 6152 - 9 1449 28751 147 2 0 705 9 0 273 0 8 307 chain 118818 chr16 90354753 + 26705422 26707006 THE1B-int 1605 - 11 1605 31481 109 1 0 80 1 0 5 19 5 180 1 0 275 0 1 19 6 12 166 2 0 278 12 37 18 5 6 51 4 0 352 chain 9315 chr16 90354753 + 26723146 26723285 MLT1A0 366 - 219 354 163993 28 1 2 91 8 3 11 chain 52197 chr16 90354753 + 26724322 26724983 PABL_B 668 - 7 668 57505 76 2 0 135 0 1 14 0 3 123 2 0 309 chain 28547 chr16 90354753 + 26743887 26744286 MSTA 426 + 34 426 90976 114 6 0 46 25 24 208 chain 11704 chr16 90354753 + 26753255 26753410 L1PA8 5853 + 5700 5853 153450 40 2 1 19 2 1 92 chain 27258 chr16 90354753 + 26761374 26761680 AluY 311 + 1 310 95407 71 0 3 235 chain 31832 chr16 90354753 + 26786500 26786933 L1PA8 5853 - 0 431 81119 93 1 0 19 2 1 44 14 18 70 2 0 3 1 0 41 1 0 142 chain 101734 chr16 90354753 + 26846626 26847940 LTR12C 1709 - 0 1709 36335 82 1 0 399 11 4 76 0 1 29 4 2 4 1 0 44 0 360 139 0 1 100 5 4 43 0 1 29 10 53 41 20 20 14 0 1 262 chain 42078 chr16 90354753 + 26860200 26860844 L1PA11 4918 + 3966 4578 66522 202 0 1 158 1 0 7 5 1 12 0 1 45 2 1 13 6 0 11 3 0 56 2 0 10 5 4 20 4 0 11 6 1 15 10 6 13 1 0 13 2 0 11 chain 14859 chr16 90354753 + 26862177 26862382 L1PA7 6471 + 6270 6470 141761 40 18 12 134 1 2 12 chain 41600 chr16 90354753 + 26880016 26880868 MER41C 542 - 0 542 67155 225 1 3 217 313 0 47 0 1 49 chain 4727 chr16 90354753 + 26880904 26880959 MLT1B 390 - 309 364 198199 55 chain 20451 chr16 90354753 + 26894174 26894453 L1PA8 5853 + 5579 5853 125754 31 2 0 69 1 0 61 2 1 19 3 2 91 chain 47469 chr16 90354753 + 26928959 26929531 L1PA7 6471 - 3 578 60855 9 2 0 53 1 7 88 1 0 418 chain 23274 chr16 90354753 + 26930038 26930337 THE1B 368 + 5 306 114326 164 1 0 9 1 2 119 0 2 5 chain 28088 chr16 90354753 + 26949218 26949603 L1PA8 5853 - 0 379 92690 84 10 9 19 2 1 61 2 1 70 2 0 44 1 0 90 chain 45248 chr16 90354753 + 26953933 26954469 L1PA7 6471 + 5933 6469 62770 536 chain 17256 chr16 90354753 + 26958533 26958907 L1PA15 4387 + 4011 4366 134908 69 28 26 4 0 1 17 19 18 35 5 4 21 4 0 10 4 3 48 7 4 44 4 2 12 5 0 26 1 0 11 chain 23719 chr16 90354753 + 26977348 26977650 AluY 311 + 4 304 111940 127 16 12 44 0 2 115 chain 43463 chr16 90354753 + 26981064 26981666 MER41B 635 + 0 635 64855 52 4 0 61 0 5 7 1 2 59 0 10 77 0 1 89 3 4 90 13 33 107 1 0 38 chain 45139 chr16 90354753 + 26996581 26997138 MER41A 554 + 0 554 62880 161 2 0 9 0 1 120 2 0 263 chain 3867 chr16 90354753 + 27007032 27007076 MLT1K 546 - 325 369 209347 44 chain 8033 chr16 90354753 + 27030890 27030979 L1PA3long 6157 + 6068 6157 170854 89 chain 15479 chr16 90354753 + 27043349 27043547 MER51C 639 - 11 207 139967 96 2 0 100 chain 26826 chr16 90354753 + 27050343 27050707 THE1B 368 - 0 368 96890 56 1 2 5 1 0 91 8 13 32 1 0 169 chain 3880 chr16 90354753 + 27050783 27050830 MADE1 96 + 49 96 209165 47 chain 21555 chr16 90354753 + 27065964 27066305 L1PA15 4387 - 31 355 121945 27 5 0 13 2 0 43 9 6 50 1 0 13 4 0 19 1 0 80 6 5 68 chain 27272 chr16 90354753 + 27067458 27067813 THE1A 353 + 0 353 95366 109 4 3 90 1 0 151 chain 4026 chr16 90354753 + 27099955 27100013 MER96B 391 + 93 152 206990 14 1 0 4 0 2 39 chain 33134 chr16 90354753 + 27102031 27102597 L1PB1 5432 + 4893 5427 79008 210 1 0 11 6 5 19 1 0 8 1 0 11 16 15 48 18 16 44 1 0 16 4 0 6 16 6 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 33472 chr16 90354753 + 27112256 27112691 L1PA8 5853 + 5425 5853 78456 22 0 1 114 1 0 43 1 0 5 2 0 67 1 0 8 6 5 49 3 2 19 1 0 93 chain 37156 chr16 90354753 + 27137301 27137806 L1PA8 5853 + 5350 5853 73304 214 1 0 41 9 7 47 8 12 8 1 0 56 7 6 19 2 1 92 chain 23815 chr16 90354753 + 27147857 27148221 THE1D 372 - 0 372 111396 32 1 0 146 47 50 117 0 6 21 chain 16182 chr16 90354753 + 27169993 27170348 THE1B 368 - 0 368 137813 47 16 15 66 60 72 31 28 29 26 13 14 68 chain 16336 chr16 90354753 + 27191850 27192062 MER44A 345 + 134 345 137379 200 1 0 11 chain 8130 chr16 90354753 + 27195975 27196088 MSTA 426 - 36 163 170331 74 2 16 37 chain 38100 chr16 90354753 + 27212287 27212766 L1PA7 6471 + 5983 6469 71982 58 0 10 408 3 0 10 chain 16477 chr16 90354753 + 27213824 27214178 THE1B 368 + 0 368 136988 61 0 3 6 51 53 46 66 74 59 5 6 60 chain 28658 chr16 90354753 + 27258443 27258818 THE1C 375 + 2 375 90492 19 0 2 162 1 2 26 5 1 136 1 0 25 chain 31409 chr16 90354753 + 27273617 27274157 L1PA14 3548 + 2963 3485 81798 37 2 0 5 2 0 24 0 10 61 0 1 4 1 0 7 10 6 13 2 0 6 1 0 72 12 12 111 14 9 36 18 15 4 1 0 18 1 0 41 6 0 10 1 0 20 chain 40578 chr16 90354753 + 27291699 27292142 L1PA3long 6157 + 5714 6157 68472 443 chain 3963 chr16 90354753 + 27301878 27302041 MLT1L 557 - 165 327 207936 29 15 4 23 77 87 19 chain 6476 chr16 90354753 + 27307619 27307735 L1MB8 1703 - 792 910 181421 14 6 10 13 8 6 75 chain 2999 chr16 90354753 + 27317655 27317741 HAL1-2a_MD 234 + 9 159 225048 20 3 0 6 4 22 12 6 0 8 4 55 14 0 4 9 chain 5080 chr16 90354753 + 27317942 27318044 HAL1-2a_MD 234 + 11 128 194300 29 11 2 7 3 0 5 0 30 32 3 0 12 chain 17113 chr16 90354753 + 27331492 27331700 MER1A 529 + 236 444 135272 208 chain 3192 chr16 90354753 + 27346513 27346576 L1MC4 1079 - 439 504 221072 12 16 18 35 chain 26060 chr16 90354753 + 27391925 27392287 THE1B 368 + 0 368 99793 15 2 0 25 0 5 127 2 1 25 0 4 85 8 6 7 0 2 66 chain 12750 chr16 90354753 + 27408195 27408940 L1MB8 1703 + 366 1096 149252 27 3 0 60 552 540 103 chain 15938 chr16 90354753 + 27430552 27430753 Tigger3b 1229 - 691 891 138559 194 1 0 6 chain 21619 chr16 90354753 + 27436072 27436471 MSTB 430 - 6 430 121697 94 0 3 32 3 0 6 1 0 5 97 110 11 0 13 150 chain 5474 chr16 90354753 + 27446096 27446161 MIRb 242 - 109 174 190261 65 chain 17155 chr16 90354753 + 27469025 27469242 AluSp 311 + 93 311 135151 83 3 4 131 chain 18362 chr16 90354753 + 27592965 27593337 L1PB1 5432 - 40 379 131903 20 1 0 26 2 0 13 9 6 30 14 1 15 1 0 14 1 0 31 18 16 50 19 13 10 1 0 9 1 0 24 1 0 7 5 4 50 chain 37491 chr16 90354753 + 27622028 27622494 MER4A1 472 + 0 465 72822 268 4 3 194 chain 23538 chr16 90354753 + 27658829 27659115 AluSp 311 - 14 301 112916 15 4 5 267 chain 39879 chr16 90354753 + 27667832 27668268 L1PA2 6032 + 5591 6029 69488 282 1 3 153 chain 20877 chr16 90354753 + 27679542 27679904 THE1B 368 + 0 368 124372 64 56 57 47 1 0 24 2 0 114 20 28 34 chain 26347 chr16 90354753 + 27708350 27708771 L1PA15 4387 - 96 507 98628 21 6 3 49 10 6 27 1 0 55 1 0 26 6 5 85 22 21 60 1 0 40 0 2 11 chain 4824 chr16 90354753 + 27818070 27818143 MIRb 242 + 55 121 197083 10 7 0 56 chain 4944 chr16 90354753 + 27859337 27859395 MIR 256 + 105 163 195757 58 chain 46091 chr16 90354753 + 27883788 27884423 MER41B 635 + 0 635 61955 126 5 6 318 19 18 43 0 1 101 3 2 20 chain 18207 chr16 90354753 + 27943673 27944017 MSTA 426 - 58 426 132318 119 57 67 14 5 9 27 2 0 45 11 12 28 1 12 35 chain 78221 chr16 90354753 + 27951326 27952184 L1PA3long 6157 + 5298 6157 44405 34 0 1 824 chain 9265 chr16 90354753 + 27975814 27975954 L1MA2 4263 + 3966 4111 164237 10 0 9 22 0 4 49 7 0 45 1 0 6 chain 4685 chr16 90354753 + 27995502 27995561 LTR47A 437 + 328 388 198697 4 0 1 55 chain 4985 chr16 90354753 + 28002187 28002240 L1PA4 6152 + 6088 6141 195300 53 chain 40608 chr16 90354753 + 28004950 28005510 MER61E 571 + 0 571 68425 82 1 14 316 8 10 35 1 2 69 21 16 27 chain 3320 chr16 90354753 + 28016976 28017056 MIR 256 + 96 160 218566 28 31 15 21 chain 4214 chr16 90354753 + 28017978 28018029 MLT1E2 623 + 538 589 204382 51 chain 3686 chr16 90354753 + 28019136 28019178 MLT1D 503 + 434 476 212146 42 chain 39354 chr16 90354753 + 28067468 28067941 L1PA4 6152 + 5668 6143 70248 150 1 0 158 0 2 6 4 1 4 0 3 46 0 1 104 chain 5123 chr16 90354753 + 28069530 28069594 MIR 256 + 61 125 193847 64 chain 16934 chr16 90354753 + 28084542 28084869 THE1B 368 - 26 367 135767 28 6 7 67 1 0 8 1 0 18 0 4 10 7 10 21 1 0 46 67 76 46 chain 4140 chr16 90354753 + 28093592 28093643 MER58B 340 + 130 181 205365 51 chain 2758 chr16 90354753 + 28147129 28147183 L1M4c 1769 - 63 117 229338 22 10 10 22 chain 20663 chr16 90354753 + 28153014 28153250 AluY 311 + 15 252 125093 117 0 1 119 chain 22706 chr16 90354753 + 28190106 28190400 AluSc 308 + 0 293 117043 19 7 6 268 chain 3643 chr16 90354753 + 28210531 28210570 MER4A1 472 - 74 113 212938 39 chain 15530 chr16 90354753 + 28232500 28232704 LTR26B 539 + 0 202 139801 190 2 0 12 chain 6965 chr16 90354753 + 28250659 28250771 MLT1B 390 - 50 158 177712 28 20 16 64 chain 41718 chr16 90354753 + 28261069 28261615 MLT2A2 560 + 0 558 67004 183 1 0 216 3 14 47 3 4 26 0 1 67 chain 31473 chr16 90354753 + 28302491 28302840 L1PA4 6152 + 5804 6152 81685 343 1 0 5 chain 12881 chr16 90354753 + 28340583 28340751 MER41B 635 - 467 635 148706 41 1 2 32 1 0 93 chain 8097 chr16 90354753 + 28346641 28346768 L1MA3 4352 + 4179 4303 170502 78 2 1 24 2 1 5 1 0 15 chain 36589 chr16 90354753 + 28384007 28384530 MER57-int 2662 + 768 1369 74114 49 12 10 119 6 15 33 0 8 39 10 12 43 4 0 131 1 66 76 chain 121729 chr16 90354753 + 28388029 28389477 SVA_B 1603 + 0 1603 30469 21 1 3 20 1 0 152 1 0 421 1 38 17 0 40 117 5 45 5 4 0 45 0 38 14 1 0 33 0 3 486 0 2 103 chain 164659 chr16 90354753 + 28427205 28429158 SVA_F 1814 + 10 1814 22713 888 2 1 25 78 0 13 90 25 39 1 0 10 2 0 30 0 1 135 1 0 10 1 0 617 1 0 10 chain 3303 chr16 90354753 + 28428120 28428172 SVA_F 1814 + 1037 1089 141930 52 chain 2178 chr16 90354753 + 28428172 28428198 SVA_F 1814 + 962 988 118642 26 chain 7456 chr16 90354753 + 28428212 28428301 SVA_F 1814 + 1001 1089 118642 4 1 0 84 chain 115222 chr16 90354753 + 28446507 28447931 LTR12C 1709 + 0 1709 32707 502 0 1 8 4 3 4 0 1 131 0 278 158 1 2 24 9 6 100 6 10 180 0 4 297 chain 136960 chr16 90354753 + 28459272 28460901 SVA_D 2077 + 17 2077 26648 16 0 1 4 11 19 130 6 23 462 0 37 44 29 8 156 0 35 45 1 0 6 0 51 55 0 303 353 0 1 311 chain 2090 chr16 90354753 + 28459945 28459974 SVA_D 2077 + 772 801 145392 29 chain 14021 chr16 90354753 + 28466254 28466438 AluJo 314 + 132 314 144499 155 2 0 27 chain 23778 chr16 90354753 + 28474770 28475073 AluSp 311 + 5 307 111602 247 2 1 54 chain 27555 chr16 90354753 + 28520378 28520672 AluYd8 298 - 4 298 94486 294 chain 6952 chr16 90354753 + 28529476 28529604 MER44A 345 + 95 221 177798 6 0 6 12 14 0 34 4 10 58 chain 20995 chr16 90354753 + 28537079 28537398 LTR2C 499 + 178 499 123935 10 3 0 114 25 27 97 9 12 61 chain 18675 chr16 90354753 + 28567680 28567963 AluSq4 311 - 25 307 131014 16 6 5 128 5 7 62 17 15 49 chain 9639 chr16 90354753 + 28582197 28582333 MLT1A0-int 1658 + 1503 1645 162404 23 0 4 47 4 6 62 chain 3566 chr16 90354753 + 28588046 28588102 L1MB8 1703 + 1289 1346 214195 19 6 7 31 chain 19823 chr16 90354753 + 28590023 28590268 AluSg4 309 + 42 286 127743 89 1 0 155 chain 64146 chr16 90354753 + 28626959 28627709 LTR13 1007 - 96 1005 50942 376 0 159 374 chain 3241 chr16 90354753 + 28636914 28636973 MIR 256 - 27 85 220205 20 8 7 31 chain 134650 chr16 90354753 + 28637152 28638666 L1PA5 6144 - 6 1522 27085 844 1 0 135 0 3 534 chain 43187 chr16 90354753 + 28640995 28641855 MER41A 554 - 1 541 65190 111 321 0 378 0 1 50 chain 26032 chr16 90354753 + 28641119 28641426 AluY 311 + 4 311 99891 307 chain 23261 chr16 90354753 + 28642634 28642980 MER83B 357 - 6 357 114381 108 1 9 94 0 9 41 0 3 13 29 14 60 chain 3932 chr16 90354753 + 28674830 28674901 MIRb 242 + 67 138 208377 16 9 10 41 1 0 4 chain 135996 chr16 90354753 + 28676782 28678371 SVA_D 2077 - 0 2066 26835 315 0 1 338 0 303 35 0 51 37 1 0 45 1 36 144 0 19 31 0 37 475 6 23 130 10 25 21 chain 116382 chr16 90354753 + 28689719 28691143 LTR12C 1709 - 0 1709 32318 297 0 4 180 6 10 100 9 6 24 1 2 105 0 278 200 0 1 502 chain 3257 chr16 90354753 + 28695238 28695283 L1PA16 3655 + 3535 3578 219838 13 2 0 30 chain 166841 chr16 90354753 + 28708506 28710773 SVA_F 1814 - 0 1805 22413 627 1 0 10 1 0 172 1 0 4 1 0 39 383 14 20 49 0 89 40 0 830 chain 22709 chr16 90354753 + 28709362 28709695 SVA_F 1814 - 549 801 114075 84 1 0 4 1 0 39 79 0 125 chain 2136 chr16 90354753 + 28709491 28709570 SVA_F 1814 - 965 1046 141311 5 0 40 16 37 0 13 1 0 7 chain 3415 chr16 90354753 + 28709512 28709549 SVA_F 1814 - 746 783 146437 37 chain 1878 chr16 90354753 + 28709695 28709745 SVA_F 1814 - 625 675 132384 50 chain 977 chr16 90354753 + 28709765 28709791 SVA_F 1814 - 695 721 132384 26 chain 1081 chr16 90354753 + 28709903 28709943 SVA_F 1814 - 1132 1172 141311 40 chain 116754 chr16 90354753 + 28748475 28749896 SVA_B 1603 - 0 1597 32208 103 0 2 486 0 3 33 1 0 9 4 0 31 2 0 3 2 0 8 4 0 42 4 0 9 5 45 104 0 40 49 1 115 325 1 0 152 1 0 20 6 2 16 chain 36600 chr16 90354753 + 28753395 28753918 MER57-int 2662 - 1293 1894 74099 76 1 66 131 4 0 43 10 12 39 0 8 33 6 15 119 12 10 49 chain 3932 chr16 90354753 + 28788977 28789048 MIRb 242 + 67 138 208376 16 9 10 41 1 0 4 chain 136055 chr16 90354753 + 28790919 28792548 SVA_D 2077 - 0 2066 26821 315 0 1 349 4 307 20 0 51 37 1 0 45 2 37 154 29 8 31 0 37 475 6 23 130 10 25 21 chain 116644 chr16 90354753 + 28803892 28805316 LTR12C 1709 - 0 1709 32247 297 0 4 180 6 10 100 9 6 24 1 2 105 0 278 200 0 1 502 chain 3257 chr16 90354753 + 28809431 28809476 L1PA16 3655 + 3535 3578 219837 13 2 0 30 chain 5991 chr16 90354753 + 28827352 28827422 L1MA3 4352 - 145 215 185319 70 chain 3268 chr16 90354753 + 28852851 28852910 Tigger2a 444 + 153 221 219631 25 3 0 8 4 16 19 chain 17848 chr16 90354753 + 28929382 28929573 AluYb8 318 - 1 192 133249 191 chain 14008 chr16 90354753 + 28932029 28932186 L1PA5 6144 - 15 172 144553 157 chain 23808 chr16 90354753 + 28982383 28983369 MER41C 542 - 11 405 111429 108 310 0 53 38 59 41 305 1 70 0 1 61 chain 4090 chr16 90354753 + 28990249 28990297 MIRb 242 - 104 152 206077 48 chain 7726 chr16 90354753 + 29009471 29009612 AluJo 314 + 142 300 172740 66 29 40 31 0 6 15 chain 311464 chr16 90354753 + 29013975 29018535 HERVL-int 5654 + 1656 5654 12946 64 316 0 70 0 1 92 25 51 132 1 2 14 0 1 52 29 8 494 0 1 157 0 1 798 0 3 383 9 29 244 5 6 252 3 6 6 3 0 82 0 1 294 0 3 60 16 13 36 2 3 203 2 0 29 0 1 6 1 0 142 0 6 23 0 7 142 298 5 75 chain 15785 chr16 90354753 + 29018535 29018721 MLT2A2 560 + 0 186 139002 186 chain 3615 chr16 90354753 + 29036528 29036572 MER53 195 + 142 186 213412 44 chain 5482 chr16 90354753 + 29045527 29045590 MER41B 635 - 91 154 190205 63 chain 3932 chr16 90354753 + 29068901 29068972 MIRb 242 + 67 138 208375 16 9 10 41 1 0 4 chain 128765 chr16 90354753 + 29070843 29072393 SVA_D 2077 - 0 2054 28374 315 0 1 349 20 19 4 0 1 37 1 0 43 0 389 158 29 8 28 0 116 399 7 24 129 1 3 20 0 1 10 chain 45091 chr16 90354753 + 29083693 29084206 L1PA3long 6157 - 1 507 62949 139 7 0 367 chain 16607 chr16 90354753 + 29104642 29104919 THE1A 353 - 52 328 136647 176 56 54 23 0 1 22 chain 5665 chr16 90354753 + 29225454 29225524 MER41B 635 + 467 549 188433 8 0 12 62 chain 30405 chr16 90354753 + 29255641 29256014 L1PA7 6471 - 10 385 83675 27 0 1 111 5 6 230 chain 12439 chr16 90354753 + 29379416 29379578 MER41B 635 - 473 635 150500 35 1 2 32 1 0 93 chain 21697 chr16 90354753 + 29423280 29423599 MER83B 357 + 0 324 121403 60 29 14 13 0 3 41 0 9 94 1 9 81 chain 42322 chr16 90354753 + 29424411 29425258 MER41A 554 + 13 553 66241 36 0 1 4 1 0 11 0 1 367 308 0 120 chain 128974 chr16 90354753 + 29427455 29428962 L1PA5 6144 + 4622 6132 28316 672 3 5 680 10 11 142 chain 22803 chr16 90354753 + 29429585 29430031 LTR7B 505 + 0 491 116559 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 16 67 69 28 1 0 76 14 13 37 chain 28076 chr16 90354753 + 29430215 29430669 LTR7B 505 + 0 503 92732 105 0 10 53 7 45 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 3590 chr16 90354753 + 29453866 29453909 Tigger4a 237 - 189 232 213826 43 chain 26144 chr16 90354753 + 29461780 29462083 AluSq10 312 + 0 303 99426 303 chain 88510 chr16 90354753 + 29482312 29483320 LTR13 1007 + 0 1007 40179 429 2 1 577 chain 26207 chr16 90354753 + 29487811 29488114 SVA_D 2077 + 1539 2073 99176 7 0 3 215 0 228 81 chain 23442 chr16 90354753 + 29503535 29503834 AluSp 311 + 5 303 113419 271 2 1 26 chain 27382 chr16 90354753 + 29509746 29510054 AluYa5 310 + 0 310 95022 38 0 2 270 chain 20251 chr16 90354753 + 29525077 29525396 MER83B 357 + 0 324 126381 60 29 14 13 7 10 34 0 9 94 1 9 81 chain 21087 chr16 90354753 + 29525423 29525722 THE1B 368 + 1 306 123585 168 1 0 29 0 3 13 18 22 70 chain 42861 chr16 90354753 + 29526204 29527050 MER41A 554 + 13 553 65583 52 0 1 367 307 0 120 chain 129598 chr16 90354753 + 29529250 29530758 L1PA5 6144 + 4622 6132 28182 672 4 5 680 10 11 142 chain 28606 chr16 90354753 + 29531381 29531827 LTR7B 505 + 0 491 90709 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 80 1 0 79 14 13 37 chain 28959 chr16 90354753 + 29532011 29532465 LTR7B 505 + 0 503 89180 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 5624 chr16 90354753 + 29555608 29555674 Tigger4a 237 - 166 232 188841 66 chain 29304 chr16 90354753 + 29565348 29565655 AluYb8 318 + 0 307 87549 307 chain 34571 chr16 90354753 + 29718809 29719289 LTR2B 499 + 0 499 76790 15 0 3 56 14 11 26 0 19 165 13 14 8 1 0 182 chain 45218 chr16 90354753 + 29720089 29720727 LTR9B 643 + 2 643 62807 63 0 3 133 10 9 31 0 1 22 1 0 157 29 30 49 1 0 93 4 5 45 chain 40262 chr16 90354753 + 29720997 29721502 LTR10D 510 - 0 510 68927 245 1 3 161 0 2 11 1 0 3 2 0 16 0 4 65 chain 4186 chr16 90354753 + 29724402 29724452 LTR8 732 - 317 367 204748 50 chain 93913 chr16 90354753 + 29726823 29730070 HUERS-P3b-int 2065 + 594 2031 38379 93 4 0 64 0 5 20 12 11 41 1 0 13 270 0 9 1 0 25 33 1 67 310 0 132 314 4 5 0 1 46 0 1 87 4 5 164 1 2 77 267 15 33 29 2 22 5 9 53 2 0 13 1 0 25 1 0 28 0 3 58 3 1 39 608 0 33 2 0 20 4 1 62 4 0 57 1 0 33 0 2 10 13 17 28 chain 29176 chr16 90354753 + 29730465 29730869 LTR9B 643 + 222 630 88170 197 15 18 157 14 15 21 chain 87073 chr16 90354753 + 29732396 29733414 LTR13 1007 - 0 1007 40748 76 0 1 38 1 0 465 8 0 29 0 1 4 1 0 9 2 3 35 4 0 346 chain 19371 chr16 90354753 + 29748061 29748363 THE1C 375 - 0 319 129023 22 4 3 92 2 0 68 1 0 5 3 4 28 11 17 53 0 14 13 chain 9295 chr16 90354753 + 29760110 29760215 LTR12C 1709 + 932 1037 164083 105 chain 17849 chr16 90354753 + 29760641 29760902 AluY 311 + 70 307 133245 62 3 0 5 0 4 34 20 0 125 5 0 7 chain 3861 chr16 90354753 + 29760912 29760955 LTR8 732 + 574 617 209436 43 chain 28868 chr16 90354753 + 29766877 29767187 AluYg6 310 - 0 310 89593 310 chain 23790 chr16 90354753 + 29767738 29768029 AluSc5 308 + 16 307 111531 291 chain 79508 chr16 90354753 + 29794082 29795362 MER11A 1151 + 0 1143 43820 79 10 18 133 1 0 11 0 2 46 21 19 42 34 0 38 0 1 9 148 0 45 0 1 116 1 0 122 6 9 12 1 2 38 0 4 114 9 41 96 10 9 25 5 4 49 1 0 58 chain 4395 chr16 90354753 + 29807892 29807944 MER5A1 166 + 38 90 202006 52 chain 24774 chr16 90354753 + 29890557 29890845 AluSp 311 - 23 311 106033 288 chain 64172 chr16 90354753 + 29942949 29943667 L1PA4 6152 - 0 720 50927 6 0 2 712 chain 19910 chr16 90354753 + 29944012 29944260 AluSc8 310 + 16 263 127443 107 3 0 10 0 2 128 chain 3825 chr16 90354753 + 29949919 29950019 MER90a 614 + 149 246 210006 20 11 12 12 18 15 20 1 0 18 chain 38464 chr16 90354753 + 29954224 29955070 LTR19B 566 + 0 566 71498 230 310 0 92 13 34 78 0 4 35 18 26 15 4 1 51 chain 3316 chr16 90354753 + 29959757 29959795 L1M1 2793 - 621 659 218653 38 chain 25895 chr16 90354753 + 29961628 29962349 L1M1 2793 - 1617 2267 100458 55 1 5 34 0 1 78 1 0 7 6 8 86 12 9 54 1 0 5 11 9 21 91 103 9 0 1 29 181 101 7 2 0 14 1 0 6 1 0 8 chain 21868 chr16 90354753 + 29965647 29965920 AluSp 311 + 15 286 120757 105 1 2 6 3 0 158 chain 17209 chr16 90354753 + 30009412 30009633 AluY 311 + 82 304 135012 49 1 2 171 chain 18534 chr16 90354753 + 30068232 30068468 AluSp 311 - 12 249 131412 23 6 7 207 chain 23617 chr16 90354753 + 30086764 30087073 AluSp 311 + 0 296 112488 50 21 5 209 0 3 29 chain 9669 chr16 90354753 + 30110765 30111007 HERVIP10F-int 4088 + 655 885 162255 19 1 0 5 12 11 16 22 19 37 1 0 3 1 0 8 1 0 24 30 28 41 1 0 6 1 0 13 chain 5154 chr16 90354753 + 30116439 30116503 MER63B 433 + 43 107 193512 64 chain 22906 chr16 90354753 + 30121475 30121765 AluY 311 + 0 296 116082 72 3 9 196 0 3 8 3 0 8 chain 14169 chr16 90354753 + 30146075 30146255 MSTA 426 - 232 411 143984 90 2 1 88 chain 20530 chr16 90354753 + 30164962 30165199 AluY 311 + 53 291 125543 79 0 1 158 chain 40611 chr16 90354753 + 30170027 30170483 SVA_A 1864 + 18 546 68418 7 4 0 404 0 76 41 chain 65345 chr16 90354753 + 30179774 30180591 SVA_D 2077 + 328 1208 50402 58 0 68 347 40 0 102 3 0 15 0 36 80 2 4 170 chain 2488 chr16 90354753 + 30180724 30180760 SVA_F 1814 + 847 894 75228 7 0 11 29 chain 84608 chr16 90354753 + 30180760 30182251 SVA_F 1814 + 845 1812 41680 10 1 0 25 0 1 66 225 15 298 314 0 195 0 3 339 0 1 3 4 0 11 chain 8362 chr16 90354753 + 30180966 30181087 SVA_F 1814 + 1017 1138 75228 121 chain 13433 chr16 90354753 + 30181394 30181699 SVA_F 1814 + 902 1223 80896 49 0 15 215 0 1 41 chain 12328 chr16 90354753 + 30183321 30183495 MER30 238 - 0 199 150902 72 1 7 33 4 19 24 0 4 40 chain 25689 chr16 90354753 + 30201119 30201417 AluSq10 312 + 0 298 101337 298 chain 88510 chr16 90354753 + 30221656 30222664 LTR13 1007 + 0 1007 40178 429 2 1 577 chain 26207 chr16 90354753 + 30227152 30227455 SVA_D 2077 + 1539 2073 99175 7 0 3 215 0 228 81 chain 27382 chr16 90354753 + 30249714 30250022 AluYa5 310 + 0 310 95021 38 0 2 270 chain 20251 chr16 90354753 + 30265062 30265381 MER83B 357 + 0 324 126380 60 29 14 13 7 10 34 0 9 94 1 9 81 chain 21087 chr16 90354753 + 30265408 30265707 THE1B 368 + 1 306 123584 168 1 0 29 0 3 13 18 22 70 chain 41996 chr16 90354753 + 30266189 30267035 MER41A 554 + 13 553 66630 52 0 1 362 312 5 120 chain 129598 chr16 90354753 + 30269232 30270740 L1PA5 6144 + 4622 6132 28181 672 4 5 680 10 11 142 chain 28401 chr16 90354753 + 30271363 30271809 LTR7B 505 + 0 491 91573 38 1 2 50 0 3 12 0 10 60 0 38 12 34 27 28 0 2 77 1 0 82 14 13 37 chain 29090 chr16 90354753 + 30271993 30272447 LTR7B 505 + 0 503 88591 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 4 16 22 16 1 0 23 0 1 52 14 13 49 chain 3712 chr16 90354753 + 30295635 30295678 Tigger4a 237 - 189 232 211768 43 chain 28115 chr16 90354753 + 30337202 30337503 AluYa5 310 - 10 310 92589 174 1 0 126 chain 21629 chr16 90354753 + 30395575 30395856 AluSc 308 + 8 292 121660 123 1 0 18 2 3 29 5 8 103 chain 23855 chr16 90354753 + 30396666 30396962 AluSc5 308 + 1 295 111153 286 2 0 8 chain 23477 chr16 90354753 + 30404397 30404696 AluSq10 312 - 12 312 113231 240 14 15 45 chain 3780 chr16 90354753 + 30419928 30420012 MIR 256 - 29 146 210652 27 30 63 27 chain 26948 chr16 90354753 + 30451889 30452240 L1PA8 5853 - 0 343 96460 92 2 1 19 2 1 61 1 0 41 1 0 30 3 0 44 1 0 54 chain 36787 chr16 90354753 + 30464215 30464677 LTR2 463 - 0 462 73813 68 6 5 15 15 16 358 chain 6760 chr16 90354753 + 30465320 30465418 HY3 101 - 2 101 179241 33 9 10 56 chain 28187 chr16 90354753 + 30465886 30466331 LTR7B 505 - 7 505 92347 44 14 13 52 0 1 26 1 0 5 17 23 15 0 1 38 29 0 28 6 68 69 0 10 67 0 4 34 chain 9181 chr16 90354753 + 30472633 30472746 AluSx 319 + 10 120 164650 25 3 0 85 chain 5998 chr16 90354753 + 30482943 30483021 HY3 101 + 21 99 185257 78 chain 4806 chr16 90354753 + 30483345 30483443 L1MB7 1623 - 576 669 197276 10 1 0 25 7 4 12 7 6 36 chain 22462 chr16 90354753 + 30487310 30487587 AluY 311 + 20 298 118185 17 0 1 71 2 1 16 0 1 171 chain 3553 chr16 90354753 + 30494476 30494515 U7 62 - 22 61 214479 39 chain 26488 chr16 90354753 + 30517599 30517908 AluY 311 + 1 311 98085 13 0 6 106 5 0 185 chain 28521 chr16 90354753 + 30518498 30518808 AluYf4 310 + 0 310 91094 310 chain 3585 chr16 90354753 + 30519108 30519150 L1MB3 1562 - 288 330 213893 42 chain 25772 chr16 90354753 + 30519530 30519822 AluSq10 312 - 8 301 101004 142 0 1 150 chain 22418 chr16 90354753 + 30539595 30539877 AluSg4 309 + 4 283 118389 36 1 0 83 2 0 18 3 0 7 0 3 132 chain 29955 chr16 90354753 + 30552389 30552831 LTR2 463 - 0 463 84951 24 1 0 28 1 0 29 4 5 74 22 36 90 2 1 35 10 19 122 chain 35302 chr16 90354753 + 30553085 30553522 LTR21A 479 - 0 479 75795 77 8 9 134 0 3 185 0 38 33 chain 37753 chr16 90354753 + 30557936 30558698 LTR2 463 - 0 463 72484 245 306 0 147 0 7 64 chain 34039 chr16 90354753 + 30559638 30560079 LTR21A 479 - 0 479 77563 80 1 0 10 7 5 125 0 3 178 1 39 39 chain 34798 chr16 90354753 + 30570852 30571306 LTR2 463 - 0 463 76481 44 0 3 53 0 1 4 0 1 125 23 23 77 0 4 128 chain 8637 chr16 90354753 + 30571550 30571663 MER34D 576 - 98 211 167559 113 chain 22015 chr16 90354753 + 30584264 30584527 AluSp 311 - 49 311 120160 164 5 4 94 chain 7376 chr16 90354753 + 30586427 30586566 L1MA4A 3247 - 68 197 174932 33 26 18 6 1 0 15 1 0 57 chain 23376 chr16 90354753 + 30588702 30588983 AluSc5 308 - 11 297 113783 18 0 1 143 0 4 120 chain 18430 chr16 90354753 + 30601110 30601330 Tigger2 2703 + 548 768 131691 220 chain 30891 chr16 90354753 + 30640536 30640959 LTR43 600 + 39 474 82697 24 0 8 144 0 1 29 1 0 5 6 12 178 3 1 33 chain 24864 chr16 90354753 + 30682676 30682988 AluSp 311 - 7 303 105550 179 16 0 117 chain 4446 chr16 90354753 + 30703890 30703950 MamRep488 187 - 74 135 201395 33 1 2 26 chain 5614 chr16 90354753 + 30712677 30712745 U6 107 - 28 96 188931 68 chain 29572 chr16 90354753 + 30746457 30746766 AluYa5 310 - 1 310 86317 309 chain 6876 chr16 90354753 + 30757440 30757543 L1PA8 5853 - 7 111 178388 17 1 3 65 2 1 18 chain 29648 chr16 90354753 + 30810522 30810830 AluYb8 318 - 10 318 86078 308 chain 25155 chr16 90354753 + 30832850 30833251 LTR3B 427 + 14 407 103986 93 25 27 43 6 0 20 10 0 131 1 7 17 1 0 7 1 2 46 chain 26317 chr16 90354753 + 30851961 30852315 THE1C 375 - 26 375 98755 163 2 3 80 1 0 49 3 0 35 2 0 19 chain 26059 chr16 90354753 + 30852687 30853429 LTR3A 482 + 26 442 99796 83 0 1 99 75 64 13 0 1 24 317 0 69 0 1 21 2 1 39 chain 89737 chr16 90354753 + 30862249 30863790 HSMAR1 1287 - 5 1279 39744 207 0 7 16 7 9 86 341 48 5 3 0 17 11 12 408 2 1 317 0 1 13 0 5 93 0 14 15 chain 29650 chr16 90354753 + 30870772 30871185 LTR7B 505 + 0 491 86062 105 0 10 56 15 22 41 2 23 54 0 41 89 14 13 37 chain 71019 chr16 90354753 + 30873466 30874560 HERVH-int 3825 + 2282 3824 47920 98 12 398 197 165 0 40 1 0 287 2 1 74 1 5 34 0 225 183 chain 26073 chr16 90354753 + 30875985 30876682 LTR7B 505 + 0 476 99736 91 0 5 9 0 10 56 24 20 5 0 1 37 2 23 11 294 0 43 1 42 88 14 13 22 chain 5216 chr16 90354753 + 30879267 30879421 MLT1D 503 + 335 417 192861 19 1 0 14 74 3 46 chain 26013 chr16 90354753 + 30929319 30929605 AluYf5 307 - 21 307 99967 286 chain 17573 chr16 90354753 + 31011863 31012076 AluSg7 307 - 59 273 134071 121 4 5 88 chain 30863 chr16 90354753 + 31033252 31033623 MER41A 554 - 182 554 82745 291 0 1 80 chain 20634 chr16 90354753 + 31066758 31066995 AluY 311 + 58 295 125173 237 chain 24727 chr16 90354753 + 31073819 31074113 AluY 311 + 0 311 106285 47 0 16 59 4 5 184 chain 8093 chr16 90354753 + 31111773 31111972 LTR18B 584 + 93 277 170531 13 30 19 4 1 0 59 13 23 17 27 14 35 chain 75225 chr16 90354753 + 31114951 31115816 SVA_D 2077 + 41 898 45912 15 7 0 152 3 1 508 1 2 179 chain 18050 chr16 90354753 + 31115845 31116071 SVA_F 1814 + 617 1116 132737 14 1 41 61 0 233 150 chain 1746 chr16 90354753 + 31116138 31116164 SVA_E 1901 + 1020 1046 82581 26 chain 64416 chr16 90354753 + 31116164 31117029 SVA_E 1901 + 669 1901 50835 26 0 40 9 0 40 28 1 0 5 1 0 110 8 5 98 49 0 65 1 0 72 40 68 125 0 314 227 chain 3504 chr16 90354753 + 31116637 31116677 SVA_E 1901 + 820 859 189012 16 1 0 23 chain 11729 chr16 90354753 + 31176000 31176139 L1PA7 6471 - 9 147 153351 4 1 0 134 chain 5345 chr16 90354753 + 31180595 31180653 SVA_E 1901 - 5 63 191598 58 chain 78676 chr16 90354753 + 31180681 31181554 SVA_D 2077 + 593 2013 44201 94 0 40 186 0 488 44 1 0 478 0 20 70 chain 85669 chr16 90354753 + 31182942 31183946 LTR13 1007 - 0 1007 41286 70 1 0 171 2 11 21 4 0 430 1 0 304 chain 6892 chr16 90354753 + 31227667 31227743 LTR12D 1347 + 831 907 178254 76 chain 35972 chr16 90354753 + 31241398 31242186 LTR15 485 + 3 475 74924 276 1 5 81 309 0 31 2 1 31 4 0 12 7 0 14 4 5 16 chain 132562 chr16 90354753 + 31242897 31244418 SVA_D 2077 + 6 1740 27510 127 1 0 466 0 40 48 0 40 160 0 83 63 3 5 181 49 0 84 0 98 339 chain 3552 chr16 90354753 + 31243946 31243995 SVA_D 2077 + 1043 1091 76392 5 1 0 43 chain 48106 chr16 90354753 + 31244809 31246801 Tigger1 2417 - 185 1507 60398 23 0 1 138 1044 672 104 303 3 96 0 1 284 chain 5830 chr16 90354753 + 31246807 31246880 Tigger1 2417 - 867 938 186867 5 2 0 66 chain 25393 chr16 90354753 + 31255966 31256258 AluSp 311 - 18 311 102719 154 0 1 138 chain 83157 chr16 90354753 + 31256686 31257736 MER11B 1079 - 15 1052 42271 15 8 5 278 6 0 171 34 32 304 6 3 5 0 1 223 chain 28245 chr16 90354753 + 31263565 31264012 LTR7B 505 - 10 505 92134 41 14 13 54 0 1 14 8 7 16 10 15 15 0 1 38 29 0 28 6 68 69 0 10 105 chain 530256 chr16 90354753 + 31290061 31296174 L1PA5 6144 - 1 6144 4156 1242 0 1 36 0 1 675 1 21 492 1 0 714 0 1 591 0 1 941 1 0 62 0 1 194 9 0 515 7 8 267 1 2 245 0 14 119 chain 18453 chr16 90354753 + 31296245 31296472 LTR2 463 - 0 228 131631 131 0 1 96 chain 119902 chr16 90354753 + 31299741 31301087 L1PA5 6144 + 4795 6144 31089 502 0 4 584 1 0 259 chain 105960 chr16 90354753 + 31304534 31306024 L1PA14 3548 - 95 1582 35265 24 6 16 15 1 0 5 1 0 14 4 2 34 17 12 112 1 0 81 0 6 14 10 6 107 2 0 5 2 0 47 2 0 14 3 1 159 1 0 90 1 0 46 7 12 88 7 6 60 8 0 28 0 1 108 0 7 122 1 2 243 chain 4571 chr16 90354753 + 31310985 31311039 L1MB1 2102 - 108 162 199979 54 chain 159505 chr16 90354753 + 31315170 31317474 L1PB2 3958 - 131 2441 23399 14 16 15 23 1 0 22 12 10 54 9 8 63 1 0 55 1 2 16 1 0 94 5 0 6 8 6 65 5 0 11 1 0 56 2 0 95 2 9 279 1 0 184 3 1 27 1 0 62 0 5 117 5 6 40 2 0 112 0 2 27 2 1 5 0 1 83 1 2 27 5 4 128 4 3 36 21 16 272 1 0 93 8 9 16 0 3 43 15 36 46 chain 347600 chr16 90354753 + 31318340 31322254 L1PA4 6152 - 1373 5243 11680 1270 1 0 222 1 0 84 1 0 1419 42 0 834 0 1 40 chain 3725 chr16 90354753 + 31321338 31321379 L1PA4 6152 + 1734 1775 206097 41 chain 122474 chr16 90354753 + 31322254 31323617 L1PA4 6152 + 4789 6152 30204 1363 chain 122961 chr16 90354753 + 31324555 31326070 L1PA8 5853 - 7 1517 30063 86 4 3 15 1 0 39 6 5 9 1 0 8 4 7 61 5 3 48 1 0 552 2 0 605 1 2 67 chain 29305 chr16 90354753 + 31327233 31327551 AluYb8 318 + 0 318 87545 318 chain 3761 chr16 90354753 + 31337569 31337621 L1MB8 1703 - 115 171 210948 13 1 5 38 chain 549627 chr16 90354753 + 31349190 31355359 L1PA4 6152 + 0 6152 1504 128 14 0 750 11 9 1281 0 1 1040 1 0 78 1 0 2865 chain 71825 chr16 90354753 + 31379929 31380715 SVA_D 2077 - 0 831 47554 660 0 49 21 4 0 101 chain 29295 chr16 90354753 + 31438154 31438461 AluYb8 318 + 0 307 87596 307 chain 24343 chr16 90354753 + 31450196 31450471 L1PA5 6144 + 5858 6132 108403 268 1 0 6 chain 27239 chr16 90354753 + 31476636 31476953 LTR13 1007 - 685 1007 95465 18 1 0 189 1 7 108 chain 34056 chr16 90354753 + 31524086 31524690 LTR3B_ 500 - 20 494 77534 53 145 0 18 0 2 14 1 0 13 5 18 61 1 2 137 0 1 85 1 0 70 chain 3189 chr16 90354753 + 31524212 31524247 LTR3B_ 500 - 38 73 221143 35 chain 87450 chr16 90354753 + 31528055 31529126 MER11B 1079 + 0 1063 40578 259 3 0 279 1 0 4 0 1 168 0 1 60 8 2 289 chain 37311 chr16 90354753 + 31551053 31551542 MER9a3 513 + 15 506 73071 80 15 16 145 1 0 148 4 5 24 2 3 70 chain 165396 chr16 90354753 + 31552165 31554213 HERVK9-int 4720 + 183 4720 22604 119 10 11 824 8 13 519 26 2509 515 9 8 5 0 1 13 chain 37106 chr16 90354753 + 31554225 31554721 MER9a3 513 + 15 513 73373 51 0 2 32 10 11 145 6 5 172 2 3 58 1 0 19 chain 50901 chr16 90354753 + 31555760 31556349 LTR10C 591 + 0 591 58370 508 0 2 81 chain 30981 chr16 90354753 + 31560689 31561202 MER41C 542 + 1 542 82548 48 0 1 13 16 57 11 2 6 37 8 0 7 3 11 118 5 6 95 36 17 114 chain 89136 chr16 90354753 + 31570307 31571573 L1PA14 3548 + 2234 3465 39948 455 1 0 161 1 0 64 0 1 36 6 2 48 2 0 4 2 0 53 4 0 54 7 3 16 2 0 6 1 0 84 1 0 81 1 0 30 1 0 8 14 10 9 0 2 17 4 2 13 1 0 3 1 0 19 1 0 41 5 0 9 chain 22079 chr16 90354753 + 31581535 31581801 AluSp 311 + 11 287 119890 60 0 2 171 0 8 35 chain 71104 chr16 90354753 + 31590288 31591097 MER11C 1089 - 26 834 47884 495 2 1 312 chain 26939 chr16 90354753 + 31592591 31592954 THE1B 368 - 0 363 96490 170 2 0 30 1 0 126 0 5 12 10 8 12 chain 281077 chr16 90354753 + 31595804 31599759 L1PA10 4194 - 44 3971 14579 34 3 0 30 7 4 105 0 1 782 0 1 55 16 10 165 0 1 119 3 5 175 6 0 42 0 3 71 1 2 86 1 0 25 0 1 310 22 20 78 0 3 71 0 1 111 9 10 130 4 5 42 7 5 92 1 2 637 0 5 37 10 18 96 0 11 36 24 26 194 12 15 57 36 28 11 5 0 12 1 0 7 1 0 5 1 0 10 16 14 21 1 0 4 39 15 8 1 0 14 3 1 14 1 0 7 1 0 9 1 0 9 2 0 9 chain 34264 chr16 90354753 + 31615719 31616203 MER9a3 513 - 4 511 77260 30 0 1 43 0 1 159 0 17 66 26 27 53 11 12 85 0 2 11 chain 469811 chr16 90354753 + 31619404 31626335 L1PA8A 6298 + 101 6291 8041 18 39 29 8 1 0 22 2 0 11 2 0 5 57 50 12 6 1 9 2 0 31 12 11 22 8 0 77 2 0 8 27 24 37 9 7 23 6 5 393 0 1 117 430 0 80 43 47 73 4 3 39 1 4 178 0 1 337 0 1 35 3 9 233 1 0 404 1 7 25 1 3 4 1 0 74 0 14 501 309 3 411 0 1 115 0 1 73 0 1 162 2 0 6 0 2 8 1 2 236 0 1 328 1 2 617 0 3 163 1 0 255 2 0 292 0 1 406 4 3 105 chain 20237 chr16 90354753 + 31636374 31636640 AluY 311 + 39 295 126420 84 1 0 9 0 1 17 2 1 134 9 0 10 chain 555306 chr16 90354753 + 31641198 31647339 L1PA3long 6157 - 10 6153 792 140 2 0 623 1 2 66 0 4 345 1 0 219 4 0 387 0 4 4353 chain 70464 chr16 90354753 + 31666938 31667868 L1PA8 5853 + 4785 5853 48181 221 8 6 72 0 2 40 0 1 211 15 158 19 0 1 46 1 0 46 2 0 70 2 1 14 1 0 47 2 1 19 1 0 93 chain 14249 chr16 90354753 + 31669543 31669734 L1PA8 5853 + 5564 5760 143723 45 2 0 70 1 0 8 2 1 45 0 9 18 chain 8392 chr16 90354753 + 31669736 31669828 L1PA8 5853 + 5761 5853 168895 92 chain 41710 chr16 90354753 + 31671281 31671891 LTR14B 630 + 8 630 67017 102 10 0 146 5 37 5 0 1 52 0 21 21 0 9 39 5 0 5 33 0 68 2 0 99 1 0 17 chain 116054 chr16 90354753 + 31672098 31673767 HERVK14-int 1672 + 6 1659 32435 24 1 0 4 7 6 50 1 0 195 21 20 35 2 0 160 0 1 68 7 6 36 1 0 208 1 0 13 6 8 142 1 0 75 18 14 33 2 1 203 1 0 89 0 1 18 7 6 52 6 5 16 29 27 137 chain 534727 chr16 90354753 + 31698542 31704631 L1PA4 6152 + 2 6138 3626 126 0 14 160 1 0 359 0 1 293 0 4 188 0 5 29 0 4 51 0 1 851 0 2 1425 0 1 603 0 12 220 0 4 387 4 0 561 0 3 702 0 1 129 chain 23684 chr16 90354753 + 31706318 31706683 THE1D 372 - 2 372 112132 30 1 0 17 0 1 37 13 7 84 38 49 145 chain 38946 chr16 90354753 + 31751014 31751542 MER9a3 513 + 0 513 70808 18 0 2 78 12 13 147 1 0 15 19 1 110 3 2 47 2 3 50 0 1 26 chain 452363 chr16 90354753 + 31753531 31761134 L1PA8A 6298 - 7 6270 8681 103 1 0 91 6 5 377 4 3 4 0 1 214 1 4 80 0 1 15 9 45 34 0 1 4 1 0 475 1 2 8 1 0 380 3 1 11 2 3 526 5 6 25 0 1 189 1 5 69 5 0 156 0 5 751 0 2 276 0 3 191 0 2 437 0 1 151 6 5 150 1476 0 209 0 3 19 0 1 102 37 42 30 14 147 61 0 1 285 3 4 55 6 5 75 25 22 10 2 0 76 9 1 20 9 8 36 2 0 8 49 40 9 1 0 5 2 0 15 2 0 11 130 111 11 1 0 16 1 0 6 6 0 6 chain 130066 chr16 90354753 + 31758317 31759770 L1PA4 6152 - 5 1460 28014 278 0 1 1085 0 1 90 chain 124957 chr16 90354753 + 31774398 31776530 HERVK22-int 3844 - 1460 3844 29406 55 26 15 31 0 2 540 5 4 169 0 8 184 11 10 318 4 17 184 487 732 72 3 0 43 chain 278707 chr16 90354753 + 31783696 31787642 L1PA10 4194 + 223 4097 14708 9 2 0 9 1 0 9 1 0 21 3 1 14 1 0 8 45 19 22 2 0 23 1 0 5 1 0 7 1 0 10 1 0 15 10 0 8 1 0 85 7 5 57 11 21 117 23 27 34 33 36 75 6 14 23 0 1 655 1 2 92 0 2 7 17 13 272 1 0 81 0 3 247 18 28 246 0 1 74 0 3 47 16 8 164 4 0 285 9 2 8 3 0 55 0 1 192 9 5 7 34 0 684 6 4 11 chain 160460 chr16 90354753 + 31807738 31810060 L1PA14 3548 - 83 2390 23278 10 6 0 40 1 0 19 5 3 16 4 2 8 0 1 4 0 2 19 5 1 8 16 0 30 1 0 81 1 0 84 1 0 6 2 0 17 4 0 51 0 1 57 2 0 4 2 0 48 2 0 14 3 1 249 1 0 153 16 15 68 0 1 127 7 8 208 28 34 44 0 1 41 6 5 8 0 1 29 0 17 23 4 7 309 22 21 50 0 4 63 2 1 293 chain 69178 chr16 90354753 + 31824126 31824894 L1P1 4361 - 102 867 48728 69 2 0 40 1 0 656 chain 46938 chr16 90354753 + 31824894 31825413 L1P1 4361 + 2965 3484 61271 519 chain 48989 chr16 90354753 + 31826117 31826705 LTR10C 591 - 0 591 59760 82 4 6 311 1 2 190 chain 316520 chr16 90354753 + 31837338 31841912 L1PA3long 6157 + 1868 6157 12741 74 350 353 25 1 2 5 1 0 11 86 92 67 18 31 36 0 3 6 3 0 160 60 62 184 310 0 2505 1 2 671 chain 20730 chr16 90354753 + 31841925 31842303 L1P4 1494 + 100 494 124853 27 1 0 18 7 6 7 0 2 41 13 15 19 6 10 108 45 55 86 chain 42259 chr16 90354753 + 31844571 31845084 MER75 514 + 0 514 66318 255 0 1 258 chain 120631 chr16 90354753 + 31847372 31848739 SVA_D 2077 + 325 2076 30829 567 0 83 28 1 52 145 0 257 158 12 5 456 chain 18249 chr16 90354753 + 31850189 31850428 L1PB4 2604 + 2135 2374 132205 109 0 5 10 8 3 112 chain 43631 chr16 90354753 + 31859556 31860186 LTR10E 629 + 0 622 64650 18 3 2 134 0 1 5 17 14 122 3 2 26 1 0 55 8 7 175 26 24 37 chain 3577 chr16 90354753 + 31865839 31865889 L1PB1 5432 - 35 83 214014 5 1 0 22 1 0 21 chain 25167 chr16 90354753 + 31870325 31871704 L1PA8 5853 + 5488 5853 103923 76 1 0 45 2 0 70 1 0 9 1 0 16 1027 20 16 2 1 19 1 0 93 chain 24490 chr16 90354753 + 31902787 31903146 THE1B 368 + 0 368 107600 103 0 1 65 1 0 29 35 45 105 2 1 19 chain 17514 chr16 90354753 + 31903146 31903370 THE1B-int 1605 + 0 220 134227 41 8 4 175 chain 27574 chr16 90354753 + 31903377 31903735 THE1B 368 - 0 368 94421 176 4 0 23 1 0 114 1 16 39 chain 94084 chr16 90354753 + 31903735 31904907 THE1B-int 1605 - 0 1211 38326 47 1 0 174 1 7 412 0 9 499 0 25 38 chain 69498 chr16 90354753 + 31910131 31910962 L1P1 4361 + 2250 3090 48609 64 0 1 63 0 4 181 0 4 523 chain 536973 chr16 90354753 + 31912128 31918246 L1PA4 6152 - 6 6152 3315 652 0 3 183 0 4 272 5 6 539 0 2 490 5 11 132 10 9 4 0 1 219 1 0 109 0 1 300 0 1 665 0 1 217 0 1 1279 0 2 331 0 7 303 1 0 380 0 1 21 chain 557256 chr16 90354753 + 31948878 31955023 L1PA3long 6157 + 6 6157 585 320 0 3 1412 0 2 511 0 1 1432 0 1 515 2 0 1645 0 1 308 chain 76731 chr16 90354753 + 31976554 31977545 L1PA7 6471 - 2961 3931 45080 14 7 6 70 0 4 293 3 0 446 1 3 37 23 0 97 chain 232614 chr16 90354753 + 31977545 31980464 L1PA7 6471 + 3535 6459 17166 742 6 8 125 0 1 275 4 0 333 14 1 198 4 0 63 1 0 48 2 5 256 0 10 23 0 5 65 2 1 6 0 2 94 1 5 427 0 1 230 chain 30296 chr16 90354753 + 31985264 31985582 AluYb8 318 + 0 318 83923 318 chain 3385 chr16 90354753 + 32009769 32009807 MER20 218 - 150 188 217367 38 chain 28757 chr16 90354753 + 32060826 32061128 AluYb8 318 - 16 318 90084 302 chain 129274 chr16 90354753 + 32081161 32082811 L1PA8 5853 - 0 1634 28247 90 4 3 17 6 5 37 31 23 70 2 0 44 1 0 90 0 1 379 2 0 85 2 0 3 2 0 406 0 1 234 5 6 140 chain 283179 chr16 90354753 + 32087324 32090615 L1PA5 6144 + 2845 6144 14457 29 4 0 102 0 1 518 0 1 1324 0 2 76 0 1 392 0 4 276 7 8 386 4 0 69 1 7 103 chain 54596 chr16 90354753 + 32113338 32113956 L1PA2 6032 - 4 623 55969 149 1 2 468 chain 59005 chr16 90354753 + 32113956 32114611 L1PA2 6032 + 4747 5404 53391 564 0 2 91 chain 19279 chr16 90354753 + 32158802 32159113 THE1B 368 - 27 362 129290 90 43 53 29 1 0 112 1 16 35 chain 75661 chr16 90354753 + 32160769 32161600 L1PA3long 6157 + 3840 4671 45683 831 chain 135468 chr16 90354753 + 32161601 32163082 L1PA3long 6157 + 4671 6152 26928 1481 chain 57663 chr16 90354753 + 32228105 32228836 L1PA7 6471 + 5725 6459 54152 162 2 0 104 7 16 129 0 1 170 0 1 13 7 1 137 chain 27886 chr16 90354753 + 32239018 32239487 THE1B-int 1605 + 35 524 93412 120 52 0 36 21 30 63 2 1 93 17 81 65 chain 79514 chr16 90354753 + 32242943 32243901 LTR13A 966 - 0 966 43817 298 2 0 70 1 9 145 2 0 360 0 1 38 0 3 42 chain 74269 chr16 90354753 + 32254273 32255144 LTR13A 966 + 7 878 46375 78 1 0 43 0 1 749 chain 26721 chr16 90354753 + 32257405 32257811 LTR3A 482 - 62 471 97256 13 13 12 51 0 1 78 2 0 8 36 38 74 0 1 28 0 1 5 0 1 98 chain 66043 chr16 90354753 + 32335340 32336085 L1PA5 6144 + 5399 6144 50076 745 chain 4272 chr16 90354753 + 32356406 32356462 L1MB7 1623 + 1365 1420 203588 5 1 0 50 chain 187480 chr16 90354753 + 32379456 32381701 L1P2 5180 - 1310 3546 20293 141 15 6 35 1 0 185 1 0 1121 1 2 350 1 2 305 1 2 7 1 0 80 chain 111616 chr16 90354753 + 32381701 32382998 L1P1 4361 + 3047 4341 33773 1104 1 0 154 1 0 23 2 1 12 chain 7716 chr16 90354753 + 32391899 32391996 L1PA7 6471 + 6374 6468 172822 15 0 1 72 4 0 6 chain 27756 chr16 90354753 + 32393247 32393542 AluYg6 310 - 15 310 93848 295 chain 5991 chr16 90354753 + 32395624 32395694 L1PA8 5853 - 17 87 185321 70 chain 13689 chr16 90354753 + 32404759 32405119 L1PB1 5432 - 16 325 145631 12 1 0 12 9 8 14 1 0 26 2 0 12 1 0 5 3 1 18 14 5 7 3 0 16 1 0 44 18 16 12 2 1 29 26 20 14 1 0 10 1 0 18 19 0 9 chain 2862 chr16 90354753 + 32407878 32407910 L1PA15 4387 - 572 604 227651 32 chain 212426 chr16 90354753 + 32420454 32422954 L1PA6 6164 - 13 2536 18334 261 1 0 102 1 2 441 1 2 21 0 4 34 0 20 24 4 6 23 1 0 565 3 0 1018 chain 492057 chr16 90354753 + 32423115 32429258 L1PA5 6144 - 4 6144 7265 5 3 0 128 0 4 197 0 1 1177 1 0 150 6 8 664 11 14 122 3 0 168 1 0 217 0 1 161 0 4 1039 9 10 169 1 0 480 17 17 15 0 1 158 0 1 60 13 4 211 24 0 371 0 3 21 0 1 24 0 2 6 10 11 262 1 3 39 3 2 60 0 13 136 chain 26793 chr16 90354753 + 32454286 32454591 AluYa5 310 - 7 309 97005 6 3 0 296 chain 26002 chr16 90354753 + 32470844 32471132 AluYf4 310 - 3 310 100008 59 0 19 229 chain 22327 chr16 90354753 + 32502561 32502838 L1PA5 6144 - 15 293 118790 74 0 1 203 chain 39388 chr16 90354753 + 32570826 32571337 MER9a2 513 - 0 513 70186 450 1 3 12 1 2 6 1 0 40 chain 40529 chr16 90354753 + 32572241 32572704 L1PA2 6032 - 1209 1678 68550 304 1 7 158 chain 97812 chr16 90354753 + 32572704 32573793 L1PA2 6032 + 4819 6026 37328 353 0 1 420 0 116 177 0 1 139 chain 97471 chr16 90354753 + 32588311 32589436 L1PA4 6152 - 12 1140 37433 309 2 1 445 0 1 75 0 3 294 chain 52361 chr16 90354753 + 32589436 32590063 L1PA4 6152 + 4387 5015 57278 589 1 2 37 chain 80634 chr16 90354753 + 32598802 32599718 L1HS 6032 - 5116 6032 43328 916 chain 5749 chr16 90354753 + 32650342 32650420 LTR15 485 + 411 485 187642 25 4 0 49 chain 26999 chr16 90354753 + 32694256 32694662 LTR3A 482 + 11 420 96287 98 0 1 5 0 1 28 0 1 74 40 41 4 1 0 83 0 1 47 13 12 13 chain 74391 chr16 90354753 + 32696926 32697797 LTR13A 966 - 88 959 46321 749 0 1 45 1 0 76 chain 79645 chr16 90354753 + 32708173 32709131 LTR13A 966 + 0 966 43758 42 0 3 38 0 1 360 2 0 145 1 9 69 2 0 299 chain 29267 chr16 90354753 + 32712587 32713056 THE1B-int 1605 - 1081 1570 87712 63 0 64 112 2 1 63 21 30 35 52 0 121 chain 57235 chr16 90354753 + 32723251 32723982 L1PA7 6471 - 12 746 54377 137 0 1 13 7 1 175 0 1 124 7 16 105 2 0 161 chain 25344 chr16 90354753 + 32737369 32737667 AluSc8 310 + 2 303 102989 130 0 3 168 chain 210832 chr16 90354753 + 32787043 32789355 L1PA3long 6157 - 5 2317 18440 2312 chain 59332 chr16 90354753 + 32835920 32836572 L1PA2 6032 - 628 1280 53203 652 chain 55766 chr16 90354753 + 32836577 32837198 L1PA2 6032 + 5409 6031 55265 468 1 2 152 chain 21713 chr16 90354753 + 32848629 32848897 L1PA4 6152 - 1 267 121337 5 2 0 261 chain 367162 chr16 90354753 + 32849806 32854145 L1P1 4361 - 20 4360 11182 12 2 1 23 1 0 146 9 8 467 0 4 2728 0 1 377 1 0 573 chain 43717 chr16 90354753 + 32860237 32860731 L1PA3long 6157 + 5658 6157 64550 315 0 3 174 0 2 5 chain 17441 chr16 90354753 + 32861661 32861918 L1PA7 6471 - 2111 2369 134399 77 23 24 51 0 2 7 2 0 97 chain 164072 chr16 90354753 + 32861918 32863990 L1PA7 6471 + 4384 6457 22802 390 0 1 180 1 0 237 1 5 14 6 5 323 1 2 4 1 0 68 1 4 85 0 1 4 1 0 213 4 0 216 0 1 150 4 0 36 2 0 5 1 5 124 chain 2767 chr16 90354753 + 32864626 32864658 L1PA3long 6157 + 6021 6053 229225 32 chain 7816 chr16 90354753 + 32864663 32864752 L1PA3long 6157 + 6062 6151 172211 89 chain 99328 chr16 90354753 + 32902645 32904247 L1P2 5180 + 461 1740 36946 45 11 10 271 1 0 6 1 0 136 323 0 73 0 1 4 2 1 123 0 1 100 0 1 213 1 0 10 0 1 42 1 2 239 chain 78007 chr16 90354753 + 32918054 32919055 L1PA7 6471 - 2948 3931 44469 13 0 1 16 4 3 74 0 4 289 3 0 446 1 3 34 21 0 100 chain 227960 chr16 90354753 + 32919055 32921966 L1PA7 6471 + 3535 6459 17420 479 2 1 262 6 8 125 0 1 608 8 1 164 7 11 23 4 0 63 1 0 48 2 5 258 0 10 22 1 5 64 2 1 6 0 2 94 1 5 427 0 1 166 6 2 62 chain 4166 chr16 90354753 + 32953294 32953344 MER20 218 - 138 188 205019 50 chain 28455 chr16 90354753 + 33004051 33004354 AluYb8 318 - 15 318 91357 303 chain 129591 chr16 90354753 + 33024421 33026070 L1PA8 5853 - 0 1634 28183 90 4 3 17 6 5 37 31 23 70 2 0 44 1 0 90 0 1 379 2 0 87 3 0 407 0 1 234 5 6 140 chain 283376 chr16 90354753 + 33030569 33033864 L1PA5 6144 + 2845 6144 14445 29 4 0 102 0 1 518 0 1 1324 0 2 76 0 1 672 7 8 386 4 0 69 1 7 103 chain 55115 chr16 90354753 + 33056620 33057239 L1PA2 6032 - 3 623 55633 150 1 2 468 chain 58824 chr16 90354753 + 33057239 33057895 L1PA2 6032 + 4747 5404 53504 566 0 1 90 chain 210963 chr16 90354753 + 33103686 33105998 L1PA3long 6157 + 3840 6152 18433 2312 chain 57235 chr16 90354753 + 33169065 33169796 L1PA7 6471 + 5725 6459 54376 162 2 0 104 7 16 129 0 1 170 0 1 13 7 1 137 chain 27755 chr16 90354753 + 33179982 33180451 THE1B-int 1605 + 35 524 93852 120 52 0 36 21 30 63 2 1 93 17 81 65 chain 79645 chr16 90354753 + 33183907 33184865 LTR13A 966 - 0 966 43759 299 2 0 69 1 9 145 2 0 360 0 1 38 0 3 42 chain 74138 chr16 90354753 + 33195239 33196110 LTR13A 966 + 7 878 46440 78 1 0 43 0 1 749 chain 27236 chr16 90354753 + 33198373 33198779 LTR3A 482 - 62 471 95474 13 13 12 51 0 1 79 2 0 7 36 38 74 0 1 28 0 1 5 0 1 98 chain 10029 chr16 90354753 + 33241271 33241396 LTR13A 966 - 837 966 160432 45 0 1 38 0 3 42 chain 74138 chr16 90354753 + 33251772 33252643 LTR13A 966 + 7 878 46439 78 1 0 43 0 1 749 chain 26774 chr16 90354753 + 33254906 33255312 LTR3A 482 - 62 471 97069 13 13 12 51 0 1 79 1 0 4 40 41 74 0 1 28 0 1 5 0 1 98 chain 65799 chr16 90354753 + 33332771 33333516 L1PA5 6144 + 5399 6144 50196 745 chain 24307 chr16 90354753 + 33431197 33431484 AluSg7 307 - 13 301 108621 162 0 1 125 chain 4048 chr16 90354753 + 33446228 33446271 MADE1 96 + 53 96 206665 43 chain 456590 chr16 90354753 + 33451845 33457307 L1PA7 6471 + 920 6468 8525 754 20 19 65 0 1 50 0 1 615 0 2 93 0 2 117 0 2 748 10 70 545 7 6 253 11 18 204 1 2 99 1 9 360 2 1 463 0 1 4 0 1 197 0 3 307 1 0 22 0 1 513 chain 34186 chr16 90354753 + 33605987 33606383 L1PA5 6144 + 5734 6135 77370 229 0 5 167 chain 35081 chr16 90354753 + 33616634 33617041 MER11D 897 + 468 897 76075 105 0 23 116 1 0 185 chain 3293 chr16 90354753 + 33631314 33631349 MLT2C1 407 - 327 362 219130 35 chain 283497 chr16 90354753 + 33634343 33637638 L1PA5 6144 - 0 3299 14434 103 1 7 63 4 0 392 7 8 673 0 1 76 0 2 1323 0 1 520 0 1 96 4 0 33 chain 125996 chr16 90354753 + 33642116 33643765 L1PA8 5853 + 4219 5853 29102 137 8 9 234 0 1 347 0 1 54 1 0 7 3 0 85 2 0 376 0 3 5 13 11 75 1 0 44 2 0 70 31 23 37 11 10 12 4 3 90 chain 231436 chr16 90354753 + 33745695 33748606 L1PA7 6471 - 12 2936 17232 230 1 2 426 1 5 96 6 7 65 0 5 23 0 10 256 2 5 48 1 0 63 4 0 199 9 0 608 0 1 125 6 8 742 chain 75898 chr16 90354753 + 33748606 33749604 L1PA7 6471 + 2540 3532 45497 97 24 0 37 1 3 429 5 17 293 0 4 70 7 6 13 0 1 22 chain 567679 chr16 90354753 + 33755044 33761079 L1HS 6032 - 0 6032 49 5352 4 0 607 0 1 72 chain 98361 chr16 90354753 + 33771089 33772684 L1P2 5180 - 3440 4719 37207 239 1 2 38 2 3 18 2 1 206 0 1 100 0 1 123 2 1 4 0 1 62 316 0 147 1 0 6 1 0 271 11 10 45 chain 9665 chr16 90354753 + 33810573 33810700 L1PA3long 6157 - 5 136 162271 90 5 9 32 chain 163801 chr16 90354753 + 33811336 33813412 L1PA7 6471 - 14 2087 22833 124 2 1 6 0 3 35 4 0 151 0 1 216 4 0 213 1 0 4 0 1 88 2 1 68 1 0 4 1 2 323 6 5 14 1 5 237 1 0 180 0 1 390 chain 16838 chr16 90354753 + 33813412 33813669 L1PA7 6471 + 4102 4360 136021 97 9 9 51 23 24 77 chain 43455 chr16 90354753 + 33814599 33815093 L1PA3long 6157 - 0 499 64864 5 0 2 175 0 3 314 chain 510767 chr16 90354753 + 33821141 33827059 L1PA3long 6157 + 0 6051 6090 698 1 8 257 0 1 966 5 6 515 0 4 242 1 0 586 1 0 292 0 1 434 0 1 343 0 4 110 1 117 1466 chain 13705 chr16 90354753 + 33827059 33827268 L1PA4 6152 + 5945 6151 145582 51 0 7 10 14 6 127 2 0 5 chain 49655 chr16 90354753 + 33842084 33842640 L1PA3long 6157 - 775 1331 59269 556 chain 40289 chr16 90354753 + 33842640 33843083 L1PA3long 6157 + 5381 5824 68764 443 chain 28838 chr16 90354753 + 33843084 33843416 L1PA3long 6157 + 5824 6156 89733 332 chain 77703 chr16 90354753 + 33911240 33912094 L1PA3long 6157 + 4964 5818 44656 854 chain 28863 chr16 90354753 + 33912094 33912427 L1PA3long 6157 + 5819 6152 89611 333 chain 58998 chr16 90354753 + 33920941 33921660 L1HS 6032 + 6 724 53399 243 8 7 468 chain 494958 chr16 90354753 + 33926787 33932741 L1PA4 6152 - 0 6149 7123 153 1 2 284 0 1 707 0 1 1010 0 3 179 1 0 130 2 0 428 0 3 48 3 0 660 7 10 7 3 0 84 16 16 11 0 188 665 0 3 311 6 4 369 0 2 254 0 6 6 11 5 287 1 2 310 chain 3573 chr16 90354753 + 33945938 33945980 Tigger1 2417 - 802 844 214099 42 chain 82377 chr16 90354753 + 33946552 33947565 LTR5A 1029 + 0 1029 42597 51 5 4 23 0 2 12 0 1 57 0 13 608 0 1 257 chain 92632 chr16 90354753 + 33969913 33971040 L1PA4 6152 - 1 1126 38774 143 1 2 14 20 13 70 1 4 394 0 1 484 chain 44237 chr16 90354753 + 33979912 33980400 L1PA3long 6157 - 0 488 63902 488 chain 90955 chr16 90354753 + 33980400 33981455 L1P1 4361 + 2926 3983 39306 733 0 1 274 0 1 48 chain 100456 chr16 90354753 + 33998806 34000000 L1PA3long 6157 - 2 1198 36640 130 12 17 13 5 0 832 0 2 202 chain 30296 chr16 90354753 + 34001575 34001893 AluYb8 318 - 0 318 83938 318 chain 51639 chr16 90354753 + 34002839 34003409 L1PA2 6032 - 6 576 57871 570 chain 399973 chr16 90354753 + 34016799 34021340 L1HS 6032 - 1497 6032 10097 1050 0 1 36 0 1 282 0 1 602 1 0 381 1 2 150 19 10 2019 chain 4986 chr16 90354753 + 34203370 34203497 LTR8A 794 + 36 161 195289 42 51 49 34 chain 10950 chr16 90354753 + 34214733 34214867 L1PB1 5432 - 789 926 156399 19 0 3 115 chain 31364 chr16 90354753 + 34216425 34216882 L1PB 1623 + 112 538 81881 5 1 0 49 5 2 20 7 4 77 1 0 130 1 0 85 22 0 54 chain 15276 chr16 90354753 + 34220268 34220473 MER75 514 - 0 207 140553 24 20 22 161 chain 22894 chr16 90354753 + 34222440 34222749 AluY 311 + 4 306 116133 105 15 9 14 0 1 115 1 0 33 1 0 25 chain 40607 chr16 90354753 + 34228715 34229263 MER41A 554 + 0 553 68427 222 1 2 149 1 0 21 4 3 32 5 6 17 0 4 60 0 1 36 chain 171642 chr16 90354753 + 34229382 34231396 L1P1 4361 + 1 2034 21863 112 35 49 387 0 1 91 0 1 412 0 2 174 0 1 803 chain 43932 chr16 90354753 + 34231396 34232383 HERVK-int 6823 + 5425 6567 64293 68 9 297 58 1 0 36 1 0 124 1 0 49 3 0 5 1 0 7 1 0 3 1 0 74 3 1 7 1 0 24 17 11 13 1 0 18 2 0 3 1 0 8 1 0 5 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 8 3 7 1 0 3 1 0 10 10 6 10 11 5 7 1 0 8 1 0 5 1 0 26 1 0 4 1 0 10 37 28 17 1 0 4 chain 73151 chr16 90354753 + 34233184 34234142 LTR5_Hs 974 + 0 974 46943 115 5 13 161 0 1 159 0 2 16 0 1 103 0 1 4 1 0 80 1 0 163 8 15 19 20 18 103 chain 107403 chr16 90354753 + 34244165 34245995 L1PB3 3668 + 1834 3620 34864 4 0 1 37 8 0 19 0 3 147 15 18 27 44 28 82 0 4 180 2 1 15 6 7 25 4 7 216 29 29 64 8 6 233 2 0 18 9 6 67 0 5 59 56 93 8 39 0 48 1 0 83 1 2 10 6 5 86 21 5 18 3 1 30 2 0 19 59 51 13 1 0 6 chain 35259 chr16 90354753 + 34251260 34251750 MLT2A1 477 + 0 477 75848 169 4 1 193 2 0 20 0 2 18 29 23 13 4 0 38 chain 22778 chr16 90354753 + 34263785 34264056 AluSp 311 + 11 282 116685 271 chain 9670 chr16 90354753 + 34268765 34268882 MSTB 430 - 282 408 162242 69 0 9 48 chain 75426 chr16 90354753 + 34278485 34279532 MER11A 1151 - 0 1144 45805 42 1 0 24 1 0 87 5 4 101 2 33 13 4 31 69 0 4 37 3 4 11 6 9 138 0 12 143 1 2 59 1 4 19 0 11 66 1 0 141 0 8 72 chain 7682 chr16 90354753 + 34288571 34288655 L1PA4 6152 + 6067 6151 173032 84 chain 39925 chr16 90354753 + 34302890 34303394 MER9a3 513 - 0 513 69430 57 3 7 14 0 1 323 0 1 71 0 1 16 3 5 17 chain 383751 chr16 90354753 + 34303394 34308069 HERVK9-int 4720 - 0 4684 10647 329 0 1 215 0 4 22 8 9 31 7 6 594 1 3 108 0 3 86 0 1 103 0 1 19 0 1 27 6 5 262 1 2 565 0 3 1330 1 0 88 0 1 718 26 25 26 1 0 8 1 0 66 1 0 4 8 5 13 chain 525458 chr16 90354753 + 34309286 34315289 L1PA3long 6157 + 10 6155 4633 143 1 2 79 0 1 479 8 1 50 15 143 479 0 1 1202 1 0 231 0 1 317 0 7 549 0 1 250 0 1 415 0 4 451 0 5 1333 chain 41606 chr16 90354753 + 34315414 34315923 MER9a3 513 - 0 513 67146 79 0 1 322 0 1 90 0 2 18 chain 7744 chr16 90354753 + 34330062 34330250 MER30 238 + 0 236 172630 15 0 18 22 47 70 13 2 0 14 0 6 41 12 15 22 chain 190211 chr16 90354753 + 34332969 34335071 L1PA3long 6157 - 0 2108 20026 5 3 0 1726 0 9 368 chain 16110 chr16 90354753 + 34342864 34343058 L1PA4 6152 - 9 196 138023 146 7 0 41 chain 109924 chr16 90354753 + 34349327 34350541 L1PA3long 6157 - 0 1215 34065 338 0 1 876 chain 181578 chr16 90354753 + 34350541 34352558 L1PA3long 6157 + 2886 4924 20838 1880 0 21 137 chain 3179 chr16 90354753 + 34364373 34364409 LTR14C 587 + 396 432 221373 36 chain 88770 chr16 90354753 + 34387807 34388827 LTR5A 1029 + 0 1029 40091 116 0 3 31 1 0 164 0 7 708 chain 234218 chr16 90354753 + 34391797 34394526 L1P1 4361 + 31 2769 17081 1025 0 2 77 1 7 292 0 1 1334 chain 526136 chr16 90354753 + 34394526 34400539 L1PA3long 6157 + 1 6156 4577 152 1 2 621 0 128 250 8 11 1387 0 1 22 0 5 1115 1 0 178 0 1 1172 0 12 947 7 0 147 1 0 4 chain 295026 chr16 90354753 + 34400555 34405019 L1PA4 6152 + 2759 6136 13706 71 0 4 348 0 1 326 1 0 172 1 0 754 0 1 884 0 1 158 0 1 425 1086 0 101 7 0 130 chain 514314 chr16 90354753 + 34459797 34466138 L1PA3long 6157 - 0 6157 5743 1820 499 177 59 3 5 1516 0 5 22 0 1 185 0 1 1462 9 137 599 26 27 141 chain 24788 chr16 90354753 + 34461617 34461899 L1PA3long 6157 + 3264 3546 105483 282 chain 19179 chr16 90354753 + 34461904 34462114 L1PA3long 6157 + 4134 4346 129587 128 0 2 82 chain 9146 chr16 90354753 + 34474670 34474783 THE1B 368 + 243 357 164827 63 0 1 50 chain 37694 chr16 90354753 + 34495102 34495563 LTR2 463 + 0 463 72560 129 0 3 123 1 0 208 chain 63712 chr16 90354753 + 34516203 34516924 L1PA3long 6157 + 5151 5874 51137 231 1 3 489 chain 25554 chr16 90354753 + 34516924 34517205 L1PA3long 6157 + 5875 6156 101964 281 chain 57120 chr16 90354753 + 34519805 34520520 L1PA7 6471 + 5762 6468 54452 235 12 3 468 chain 536130 chr16 90354753 + 34521557 34527707 L1PA4 6152 + 3 6152 3427 453 12 6 118 1 0 650 0 1 5 0 1 29 0 1 2673 0 1 300 1 0 330 0 1 728 1 5 593 3 1 253 chain 55438 chr16 90354753 + 34549158 34549806 LTR6A 649 + 0 649 55447 201 1 0 235 0 1 199 0 1 12 chain 28718 chr16 90354753 + 34562059 34562361 AluYf4 310 - 8 310 90256 302 chain 40364 chr16 90354753 + 34571646 34572255 LTR10E 629 + 0 621 68786 15 2 0 5 0 1 143 8 10 40 18 32 47 8 7 259 22 20 42 chain 30091 chr16 90354753 + 34593236 34593556 L1PA2 6032 + 5712 6032 84514 320 chain 74518 chr16 90354753 + 34625281 34626228 LTR13_ 950 - 0 950 46262 85 1 5 215 0 4 13 6 0 22 11 0 338 0 5 14 0 6 104 0 1 138 chain 18141 chr16 90354753 + 34634544 34634910 THE1B 368 + 0 368 132495 104 33 34 36 80 81 113 chain 43172 chr16 90354753 + 34643178 34643739 LTR19B 566 - 0 566 65207 15 3 0 5 10 17 16 0 1 512 chain 118212 chr16 90354753 + 34650442 34651979 L1PA8 5853 - 0 1545 31723 19 36 0 12 0 36 26 1 0 19 2 1 52 2 0 9 1 0 71 3 1 43 1 0 116 6 0 361 2 3 69 0 11 624 1 11 61 chain 55405 chr16 90354753 + 34652143 34652887 L1PA8 5853 + 5106 5843 55459 458 2 1 45 2 0 70 1 0 8 1 0 52 2 1 17 9 8 59 2 0 5 0 2 11 chain 529484 chr16 90354753 + 34703067 34709060 L1PA3long 6157 + 19 6156 4247 132 1 2 16 1 2 353 0 4 227 21 149 2133 0 1 470 0 2 989 0 6 115 0 1 1535 chain 288705 chr16 90354753 + 34768785 34772037 L1HS 6032 - 1751 5002 14106 51 0 4 2035 1 0 1133 4 0 28 chain 58250 chr16 90354753 + 34772050 34772683 L1PA3long 6157 + 5524 6157 53833 633 chain 32109 chr16 90354753 + 34795000 34795388 LTR3 431 + 27 422 80672 196 0 1 154 0 6 38 chain 75080 chr16 90354753 + 34825133 34826110 LTR13 1007 + 0 1007 45982 73 2 0 146 4 0 126 5 6 12 0 1 17 4 5 98 0 25 185 1 9 112 0 1 161 1 0 30 chain 48243 chr16 90354753 + 34829249 34829837 LTR10C 591 - 0 591 60279 61 14 15 4 0 1 216 0 1 293 chain 48093 chr16 90354753 + 34834504 34835092 LTR10C 591 - 0 591 60405 81 4 6 209 0 1 294 chain 3172 chr16 90354753 + 34837570 34837620 MER57A-int 1588 - 307 354 221529 41 3 0 6 chain 563086 chr16 90354753 + 34842846 34848872 L1HS 6032 - 0 6026 265 6026 chain 163652 chr16 90354753 + 34851379 34853461 Harlequin-int 5206 - 2945 5025 22854 298 21 19 418 0 1 4 1 0 231 0 4 64 0 1 37 1 0 90 0 1 138 8 7 266 1 0 199 9 4 171 0 2 17 2 1 9 0 1 97 chain 3713 chr16 90354753 + 34861167 34861214 MER57B1 401 - 16 63 211748 47 chain 33349 chr16 90354753 + 34865785 34866335 LTR19B 566 - 2 566 78654 16 0 2 10 63 75 210 0 1 37 1 0 9 0 1 30 0 8 7 16 8 32 1 0 50 0 12 7 12 0 49 chain 3370 chr16 90354753 + 34868602 34868640 L1MC1 2226 - 893 931 217668 38 chain 38515 chr16 90354753 + 34882223 34882671 L1P1 4361 + 3873 4328 71418 123 0 9 145 1 0 155 1 0 23 chain 5641 chr16 90354753 + 34885802 34885866 L1PA2 6032 + 5968 6032 188642 64 chain 374260 chr16 90354753 + 34898126 34903303 L1P2 5180 + 4 5171 10954 146 1 0 13 33 32 29 27 29 138 112 90 34 1 0 50 1 0 183 0 1 27 7 22 31 0 1 17 0 2 17 17 16 64 6 4 298 45 44 47 11 12 88 3 1 319 5 6 271 1 0 279 13 14 21 1 2 31 0 2 164 0 17 472 5 6 19 1 0 114 8 6 47 0 4 279 0 1 29 8 10 47 26 0 88 1 0 642 0 4 337 0 1 204 3 1 206 1 0 53 1 0 35 chain 37979 chr16 90354753 + 34904165 34904643 L1PA6 6164 + 5674 6161 72162 99 0 9 379 chain 53207 chr16 90354753 + 34906728 34907358 L1P2 5180 - 2 629 56891 4 1 0 38 1 0 47 1 0 538 chain 50976 chr16 90354753 + 34932190 34932782 L1PA3long 6157 - 2405 2996 58169 575 1 0 16 chain 66353 chr16 90354753 + 34932782 34933516 L1PA3long 6157 + 3765 4499 49930 734 chain 72254 chr16 90354753 + 34933516 34934317 L1PA3long 6157 + 4505 5306 47353 801 chain 75941 chr16 90354753 + 34934317 34935167 L1PA3long 6157 + 5307 6157 45522 850 chain 34231 chr16 90354753 + 34949449 34949965 LTR10E 629 - 0 545 77310 6 1 0 34 19 16 18 0 4 174 6 7 66 7 33 102 6 8 77 chain 502091 chr16 90354753 + 34950171 34956334 L1PA5 6144 - 14 6141 6723 154 4 5 299 0 2 63 0 1 87 2 3 134 1 0 760 2 1 740 0 2 8 0 2 191 7 5 251 11 9 257 26 1 580 0 1 53 0 1 199 0 1 271 26 9 1013 2 1 456 0 1 409 14 28 7 14 0 122 chain 7312 chr16 90354753 + 34956351 34956443 LTR10E 629 - 537 629 175355 67 0 1 8 1 0 16 chain 6080 chr16 90354753 + 34957567 34957684 LTR10E 629 - 2 116 182463 4 1 0 34 30 28 48 chain 10221 chr16 90354753 + 34957684 34957828 LTR10E 629 + 481 627 159508 80 5 8 53 1 0 5 chain 58769 chr16 90354753 + 35014297 35014971 L1PA5 6144 - 0 674 53541 674 chain 74802 chr16 90354753 + 35059734 35060597 L1PA4 6152 - 9 962 46112 146 1 0 260 0 91 456 chain 8415 chr16 90354753 + 35061369 35061472 L1PA11 4918 - 1803 1906 168756 103 chain 455862 chr16 90354753 + 35062107 35067191 L1PA3long 6157 - 1 5087 8549 3092 1 2 728 0 1 1263 chain 19497 chr16 90354753 + 35088294 35088508 L1PA3long 6157 - 0 214 128664 214 chain 13818 chr16 90354753 + 35090929 35091109 HERVK22-int 3844 + 3665 3844 145189 85 1 0 94 chain 105105 chr16 90354753 + 35108299 35109492 L1PA4 6152 - 11 1201 35474 845 5 1 319 0 1 24 chain 30463 chr16 90354753 + 35109499 35109833 L1PA4 6152 + 2748 3082 83506 334 chain 61391 chr16 90354753 + 35133439 35135711 HERVS71-int 4705 - 286 2215 52155 12 2 3 20 308 213 22 12 8 17 26 22 8 1 0 47 32 33 10 7 6 32 2 1 23 1 0 14 2 0 25 1 0 6 2 0 18 6 5 18 3 0 33 1 0 6 1 0 3 1 0 21 10 6 26 1 0 6 2 0 6 1 0 5 1 0 29 1 0 5 16 11 11 1 0 11 2 0 8 6 5 33 1 0 15 7 5 51 5 2 33 1 0 28 1 0 7 25 20 57 2 0 19 1 0 14 6 4 13 29 25 14 1 0 5 1 0 8 73 57 10 1 0 13 1 0 19 33 27 15 1 0 41 176 140 20 1 0 19 82 8 13 5 4 5 1 0 8 2 0 37 8 5 26 78 61 12 3 2 8 4 2 13 1 0 11 23 17 21 2 1 10 6 4 11 3 1 42 1 0 18 1 0 41 15 14 34 8 5 10 1 0 12 1 0 4 chain 161851 chr16 90354753 + 35141128 35144384 HERVH48-int 3304 - 138 3160 23084 11 2 0 72 58 44 64 2 0 7 2 1 40 4 3 6 2 0 14 9 8 10 13 5 25 10 6 8 3 0 24 157 117 17 21 19 8 1 0 18 4 2 45 20 18 4 1 0 234 1 0 42 1 0 12 5 4 64 43 40 118 0 1 106 1 0 17 4 5 267 5 4 54 33 32 63 0 9 149 7 5 12 2 1 121 24 15 20 6 5 17 2 0 19 1 0 17 1 0 7 2 0 19 16 11 24 2 0 14 1 0 20 1 0 11 3 0 26 0 12 80 26 18 64 6 5 30 5 4 39 42 40 25 27 20 19 20 14 21 45 0 20 1 0 14 12 4 6 1 0 6 0 6 45 7 8 14 25 13 17 1 0 36 2 1 36 1 0 5 6 2 50 81 55 57 2 0 11 1 0 3 2 0 12 3 1 9 5 2 6 3 0 11 chain 506562 chr16 90354753 + 35178082 35184207 L1PA4 6152 + 7 6143 6428 850 0 3 454 13 14 1881 1 0 40 28 32 176 1 0 231 0 1 1611 2 3 64 0 1 336 4 5 419 0 1 14 chain 449755 chr16 90354753 + 35186764 35192963 L1PA3long 6157 - 0 5236 8773 850 1 0 953 0 4 83 0 1 577 1 0 5 0 6 77 0 1 611 973 0 2068 chain 71760 chr16 90354753 + 35189925 35190893 LTR5_Hs 974 - 0 974 47585 103 20 18 19 10 17 65 16 14 8 0 2 72 1 0 188 8 9 129 0 1 39 0 1 122 1 0 167 chain 49489 chr16 90354753 + 35192963 35193625 L1P1 4361 + 5 739 59224 71 22 94 45 0 1 358 10 9 156 chain 151008 chr16 90354753 + 35197563 35199280 L1PA3long 6157 + 4435 6157 24478 875 0 4 683 15 16 144 chain 111270 chr16 90354753 + 35261829 35263102 L1PA3long 6157 - 1164 2441 33871 631 0 4 642 chain 96939 chr16 90354753 + 35263102 35264250 L1PA3long 6157 + 4993 6146 37468 467 1 2 276 0 1 29 0 2 242 3 4 130 chain 5972 chr16 90354753 + 35268069 35268138 L1P1 4361 + 4252 4320 185494 53 1 0 15 chain 140919 chr16 90354753 + 35281591 35283221 L1PA3long 6157 - 0 1629 26001 5 1 0 1624 chain 35496 chr16 90354753 + 35283224 35283646 L1PA3long 6157 + 4113 4536 75562 391 0 1 31 chain 27705 chr16 90354753 + 46473816 46474135 AluYb8 318 + 0 309 94024 132 1 0 164 9 0 13 chain 20087 chr16 90354753 + 46475713 46476024 THE1B 368 + 6 341 126866 38 0 15 110 1 0 29 42 52 91 chain 545069 chr16 90354753 + 46483323 46489339 L1PA2 6032 - 2 6032 2065 2023 0 1 873 0 1 562 2 1 417 0 1 1109 0 3 211 0 4 87 0 1 154 0 4 578 chain 20046 chr16 90354753 + 46514831 46515211 THE1D 372 - 2 372 126990 30 1 0 19 11 10 77 20 28 8 5 0 10 14 22 83 1 11 26 29 0 46 chain 546363 chr16 90354753 + 46523772 46529912 L1PA4 6152 + 6 6152 1900 940 1 0 84 1 0 206 0 1 585 0 1 822 0 1 1595 1 0 107 0 4 226 1 0 57 1 0 403 1 0 355 0 3 628 0 1 6 0 1 120 chain 22932 chr16 90354753 + 46555046 46555427 L1MA1 4479 - 289 649 115952 18 7 0 10 4 1 10 1 0 9 1 0 35 2 0 29 5 4 122 12 8 11 0 1 73 3 2 12 2 0 15 chain 3350 chr16 90354753 + 46557002 46557073 L1MA1 4479 - 4132 4187 218045 28 17 4 7 3 0 16 chain 556242 chr16 90354753 + 46569268 46575420 L1PA3long 6157 + 6 6157 696 2864 8 6 2107 0 1 432 5 6 402 1 0 184 1 0 6 0 1 142 chain 71475 chr16 90354753 + 46588179 46589128 LTR13 1007 + 0 1007 47703 73 6 7 99 8 42 160 4 5 109 9 17 89 0 1 88 1 0 8 1 10 107 0 1 92 0 5 62 2 1 31 chain 324282 chr16 90354753 + 46621523 46625227 L1PA5 6144 + 2426 6132 12429 40 1 2 368 6 1 413 2 0 440 0 1 376 3 1 423 0 4 132 0 1 340 0 2 102 1 3 1057 chain 7701 chr16 90354753 + 46630975 46631079 Tigger1 2417 - 11 119 172936 54 1 0 42 0 5 7 chain 22650 chr16 90354753 + 46651815 46652107 AluSp 311 + 8 299 117320 127 10 11 147 2 0 6 chain 461712 chr16 90354753 + 46674919 46680904 L1PA7 6471 + 816 6470 8344 278 1 0 101 11 0 48 2 1 23 0 1 83 6 5 29 7 4 8 0 3 122 6 0 282 1 2 248 7 9 397 0 1 4 9 8 43 7 9 107 18 0 51 310 0 417 0 4 445 0 4 764 0 1 112 0 7 48 0 1 78 2 1 217 0 1 165 5 1 34 8 9 201 0 3 71 0 2 67 0 3 136 5 7 55 0 1 81 42 30 56 1 0 32 1 0 733 chain 10434 chr16 90354753 + 46684409 46684532 LTR8 732 - 0 123 158550 123 chain 131771 chr16 90354753 + 46686572 46688087 SVA_D 2077 - 0 2077 27681 8 2 0 224 0 1 362 0 49 33 1 308 7 0 51 31 0 1 9 0 1 37 2 39 28 0 40 129 0 37 32 0 40 592 4 0 8 0 4 6 chain 24745 chr16 90354753 + 46700172 46700466 AluSp 311 - 6 298 106194 6 2 0 286 chain 16450 chr16 90354753 + 46707748 46707969 MER30 238 + 0 238 137066 98 10 0 12 1 28 100 chain 3003 chr16 90354753 + 46724386 46724420 MER5A 189 + 0 34 224972 34 chain 71248 chr16 90354753 + 46727769 46728530 SVA_F 1814 - 2 761 47832 631 1 0 11 1 0 117 chain 31490 chr16 90354753 + 46735641 46736126 MLT2A1 477 + 1 477 81658 50 0 1 54 0 2 12 3 7 15 8 9 18 1 5 211 3 1 15 11 0 14 4 1 11 3 0 6 6 0 8 0 4 32 chain 2775 chr16 90354753 + 46760153 46760192 L1PB1 5432 + 5119 5156 229083 19 1 0 9 1 0 9 chain 23615 chr16 90354753 + 46828196 46828489 AluSg7 307 - 13 307 112500 151 11 12 131 chain 21791 chr16 90354753 + 46853606 46853907 AluSp 311 + 2 294 121053 193 28 19 80 chain 24753 chr16 90354753 + 46861501 46861784 AluSq10 312 - 19 302 106155 283 chain 3543 chr16 90354753 + 46876201 46876303 L1MB7 1623 - 91 182 214666 14 15 13 6 1 0 7 5 1 12 1 0 27 4 1 10 chain 43153 chr16 90354753 + 46883719 46884267 MER41A 554 - 0 554 65227 71 17 22 370 0 1 90 chain 6915 chr16 90354753 + 46886335 46886422 LTR8 732 + 0 87 178073 87 chain 25844 chr16 90354753 + 46900975 46901652 THE1C 375 - 29 375 100676 164 1 0 30 335 5 147 chain 123021 chr16 90354753 + 46901652 46903242 THE1C-int 1605 - 0 1604 30040 37 0 1 289 0 1 107 9 10 343 1 2 155 6 2 171 2 1 7 0 1 26 5 12 42 0 2 63 12 18 300 2 1 13 chain 7655 chr16 90354753 + 46903945 46904059 THE1C 375 - 64 176 173190 34 7 5 73 chain 15551 chr16 90354753 + 46904074 46904259 THE1C 375 - 190 375 139729 185 chain 57562 chr16 90354753 + 46905576 46906319 THE1A-int 1579 - 823 1579 54203 17 1 11 71 0 1 4 1 0 4 3 6 172 0 2 131 4 2 335 chain 23851 chr16 90354753 + 46924774 46925073 AluSp 311 - 12 300 111180 7 11 0 281 chain 13984 chr16 90354753 + 46970936 46971118 MER41B 635 + 0 183 144637 128 1 2 53 chain 26553 chr16 90354753 + 47018308 47018586 AluYb8 318 - 4 282 97830 278 chain 160015 chr16 90354753 + 47033360 47035202 SVA_D 2077 + 0 2065 23339 19 5 6 14 1 26 726 0 1 112 0 182 99 49 0 163 0 61 342 1 0 169 2 5 140 chain 2558 chr16 90354753 + 47034336 47034365 SVA_D 2077 + 1312 1341 96323 29 chain 21913 chr16 90354753 + 47036711 47037002 AluY 311 + 12 297 120573 97 24 18 170 chain 5009 chr16 90354753 + 47038678 47038736 MLT1A1 405 - 44 102 195040 58 chain 90198 chr16 90354753 + 47044955 47045949 L1PA3long 6157 - 0 1000 39575 769 0 2 71 0 4 154 chain 6107 chr16 90354753 + 47045949 47046017 L1PA3long 6157 + 4982 5050 183607 68 chain 9153 chr16 90354753 + 47047232 47047432 MER58A 224 + 6 208 164798 72 51 52 25 12 13 40 chain 2975 chr16 90354753 + 47092829 47092897 MER21C 908 - 790 868 225539 21 22 32 25 chain 21003 chr16 90354753 + 47118662 47118949 MER1A 529 + 241 529 123901 161 0 6 50 21 16 55 chain 529633 chr16 90354753 + 47130653 47137361 L1PA7 6471 + 3 6470 4230 233 9 23 105 0 1 38 0 1 1696 0 1 48 288 0 11 0 4 325 1 0 31 0 2 133 0 1 88 0 3 18 2 0 71 1 0 58 0 1 370 0 2 174 0 2 41 11 15 431 0 1 77 0 1 152 0 17 409 1 0 84 0 4 254 1 0 43 0 1 70 8 7 235 9 4 172 0 1 152 5 0 108 0 1 161 19 21 379 4 0 65 0 7 100 3 0 14 chain 40080 chr16 90354753 + 47186384 47186903 MER9a2 513 + 0 513 69214 258 0 19 9 32 0 97 0 1 31 0 2 28 0 4 64 chain 18974 chr16 90354753 + 47199878 47200132 MER4B 649 + 64 316 130172 122 8 6 124 chain 31060 chr16 90354753 + 47201167 47201656 LTR7 482 + 0 482 82414 86 50 0 13 17 16 96 9 50 54 0 1 103 12 14 49 chain 96271 chr16 90354753 + 47212319 47213381 L1PA5 6144 + 4815 6131 37738 981 0 254 81 chain 145618 chr16 90354753 + 47214263 47216107 SVA_D 2077 + 4 2077 25237 514 116 0 193 0 40 115 26 2 10 0 83 72 3 5 10 1 0 45 1 0 4 1 0 6 0 78 49 2 177 38 2 0 4 1 0 27 4 0 330 0 1 270 chain 3047 chr16 90354753 + 47214835 47214893 SVA_D 2077 + 616 674 157767 58 chain 536839 chr16 90354753 + 47216668 47222683 L1PA3long 6157 + 0 6149 3335 129 1 15 10 13 0 173 0 1 15 11 0 374 7 0 59 0 128 488 1 13 5 3 0 1189 0 1 96 0 1 47 0 15 44 0 1 231 0 2 2966 7 0 146 chain 15280 chr16 90354753 + 47225208 47225421 MER30 238 + 4 232 140541 109 2 20 66 8 5 28 chain 12047 chr16 90354753 + 47228635 47228794 L1PA8 5853 - 1 158 151997 92 1 0 19 7 6 40 chain 15992 chr16 90354753 + 47229680 47229866 L1PA8A 6298 - 7 193 138376 186 chain 4705 chr16 90354753 + 47230529 47230585 MER4D 903 + 138 194 198460 56 chain 5927 chr16 90354753 + 47234041 47234113 Tigger3b 1229 + 1086 1158 185928 72 chain 35441 chr16 90354753 + 47237213 47237682 MER1A 529 - 14 487 75631 55 6 5 72 9 13 111 0 1 216 chain 2912 chr16 90354753 + 47254122 47254219 Charlie1a 1436 + 1 94 226840 13 17 14 11 24 23 32 chain 117403 chr16 90354753 + 47255157 47256826 L1P1 4361 - 379 1729 31994 248 0 1 209 1 0 321 1 0 26 1 0 343 316 0 55 2 1 146 chain 45477 chr16 90354753 + 47256829 47257320 L1PA3long 6157 + 4829 5320 62519 491 chain 73286 chr16 90354753 + 47257320 47258134 L1PA3long 6157 + 5341 6156 46892 672 0 2 137 1 0 4 chain 24219 chr16 90354753 + 47260293 47260580 L1PA4 6152 - 7 296 109101 10 0 2 277 chain 14048 chr16 90354753 + 47263841 47264062 MER44A 345 + 123 345 144386 64 3 0 65 8 11 51 10 11 20 chain 21593 chr16 90354753 + 47268667 47269023 THE1C 375 + 0 375 121797 134 1 5 34 61 76 126 chain 3234 chr16 90354753 + 47292088 47292139 L1MC4 1079 + 644 692 220344 32 4 1 15 chain 6740 chr16 90354753 + 47317772 47317975 L1MB8 1703 + 1378 1578 179392 43 1 0 13 38 37 32 50 49 26 chain 9467 chr16 90354753 + 47336351 47336455 LTR12C 1709 + 0 104 163243 104 chain 386127 chr16 90354753 + 47358055 47362393 L1PA4 6152 + 1794 6152 10571 519 0 2 21 1 2 255 0 1 270 0 9 216 0 1 682 0 1 1658 0 1 96 0 2 145 0 2 475 chain 5499 chr16 90354753 + 47366053 47366114 L1PA3long 6157 + 6096 6157 190050 61 chain 6569 chr16 90354753 + 47379071 47379199 MER30 238 - 0 122 180704 26 0 28 8 30 0 53 4 0 7 chain 4971 chr16 90354753 + 47379611 47379679 Tigger3a 397 - 191 258 195467 12 1 0 55 chain 522606 chr16 90354753 + 47380979 47387126 L1PA4 6152 + 10 6152 4905 810 33 16 478 1 2 893 0 1 684 5 1 194 0 1 74 0 1 16 1 0 704 0 1 4 6 9 886 0 1 90 0 2 164 0 1 406 0 1 436 1 0 255 0 5 6 chain 38206 chr16 90354753 + 47422600 47423079 HERV1_LTRc 486 + 0 486 71831 92 2 3 239 7 6 38 0 1 50 5 0 31 0 11 15 chain 14535 chr16 90354753 + 47437820 47438059 MER1A 529 + 285 524 142785 117 3 0 51 16 18 14 15 16 23 chain 6922 chr16 90354753 + 47451779 47451899 L1MA4A 3247 - 148 262 178016 8 5 0 58 13 12 36 chain 317456 chr16 90354753 + 47455591 47459490 L1PA6 6164 - 2 6164 12705 8 3 0 486 0 1 211 0 1689 360 3 0 5 0 3 14 8 5 47 0 572 289 0 1 136 11 1 120 0 2 348 0 5 540 1 0 515 0 17 218 9 8 42 0 2 68 8 0 232 1 0 12 0 1 204 chain 35827 chr16 90354753 + 47467901 47468530 L1PA11 4918 + 3952 4567 75098 90 1 0 9 1 2 46 6 0 8 0 6 29 7 8 19 0 1 124 6 10 27 6 5 52 7 6 11 2 1 68 2 0 13 2 1 19 22 13 10 13 9 15 1 0 13 chain 6641 chr16 90354753 + 47470135 47470206 L1PA4 6152 + 6080 6151 180155 71 chain 537716 chr16 90354753 + 47471621 47477818 L1PA4 6152 + 0 6151 3202 127 0 14 387 4 0 263 0 1 2525 2 10 1331 70 0 646 0 4 729 0 1 113 chain 6815 chr16 90354753 + 47484282 47484365 5S 121 - 31 114 178833 83 chain 42447 chr16 90354753 + 47503977 47504488 MER9a2 513 - 0 513 66082 226 0 1 89 1 0 68 1 2 113 0 1 13 chain 19658 chr16 90354753 + 47505744 47505978 AluY 311 + 60 294 128226 234 chain 2967 chr16 90354753 + 47538458 47538492 MER68 562 - 522 556 225725 34 chain 16845 chr16 90354753 + 47545738 47546012 MER1B 344 - 6 286 136002 26 44 49 175 6 7 23 chain 76409 chr16 90354753 + 47573568 47574594 MER11A 1151 + 0 1151 45257 55 0 99 66 13 12 62 4 0 30 0 2 114 5 6 91 0 1 21 1 0 125 18 10 114 0 1 12 5 38 56 0 1 51 0 1 117 1 0 23 0 1 42 chain 494397 chr16 90354753 + 47574918 47581150 L1PA6 6164 - 8 6164 7147 758 2 0 82 2 1 18 0 4 300 8 1 60 7 11 975 1 0 78 0 1 171 2 1 5 0 2 387 0 1 12 88 0 98 0 1 724 6 1 138 0 1 270 5 6 489 0 1 15 5 7 448 13 16 71 0 1 96 0 4 422 3 7 69 37 36 116 9 9 242 chain 3848 chr16 90354753 + 47584556 47584606 L1PREC2 3366 - 1743 1794 209676 44 0 1 6 chain 316121 chr16 90354753 + 47584623 47588886 L1P3 4156 - 184 4155 12757 48 0 1 364 9 13 46 1 0 608 0 1 249 0 1 12 4 2 53 0 2 415 320 0 231 7 8 257 1 0 213 0 2 63 3 4 122 2 0 315 11 26 70 0 8 518 2 1 58 24 23 237 chain 16098 chr16 90354753 + 47586449 47586643 AluSg7 307 + 10 205 138070 121 0 1 73 chain 115937 chr16 90354753 + 47589640 47590940 L1PA3long 6157 - 1454 2761 32444 339 0 4 89 0 3 872 chain 124090 chr16 90354753 + 47590940 47592303 L1PA3long 6157 + 4792 6157 29669 1188 0 2 175 chain 20955 chr16 90354753 + 47647851 47648274 MSTA 426 - 0 426 124081 16 4 5 60 50 8 19 11 17 21 26 54 24 5 6 40 12 21 135 chain 35058 chr16 90354753 + 47650606 47651067 MER9a3 513 - 0 511 76104 78 0 1 97 4 50 109 5 6 157 0 2 11 chain 133300 chr16 90354753 + 47662583 47664083 L1PA3long 6157 + 4645 6145 27369 1357 26 26 117 chain 36310 chr16 90354753 + 47665395 47665827 L1PA7 6471 - 5 447 74491 415 0 10 17 chain 6473 chr16 90354753 + 47665833 47665914 L1PA7 6471 + 5872 5953 181447 81 chain 58256 chr16 90354753 + 47678993 47679613 L1HS 6032 - 871 1491 53776 620 chain 79139 chr16 90354753 + 47679613 47680454 L1HS 6032 + 5191 6032 43983 841 chain 16193 chr16 90354753 + 47686313 47686526 L1PA16 3655 - 411 624 137772 43 1 0 64 1 0 10 0 1 50 0 1 44 chain 65738 chr16 90354753 + 47688123 47688875 L1PA5 6144 + 5394 6144 50227 637 1 0 84 4 3 26 chain 3751 chr16 90354753 + 47708264 47708309 MADE1 96 - 4 49 211120 45 chain 538556 chr16 90354753 + 47711693 47717823 L1PA4 6152 - 12 6152 3060 1411 0 1 413 0 1 302 0 1 573 0 1 254 1 0 1250 0 6 127 0 4 215 2 0 539 3 2 426 0 1 33 1 0 580 chain 69384 chr16 90354753 + 47735831 47736670 L1PA10 4194 + 3329 4161 48650 99 5 6 255 3 0 281 0 1 111 2 0 34 3 0 34 1 0 11 chain 9733 chr16 90354753 + 47750454 47750574 MER49 923 + 166 286 161927 120 chain 80514 chr16 90354753 + 47792556 47793457 L1PA5 6144 - 1127 2026 43309 154 1 0 691 1 0 54 chain 98943 chr16 90354753 + 47793457 47794590 L1PA5 6144 + 5011 6142 37039 990 0 1 65 3 2 66 2 0 7 chain 22488 chr16 90354753 + 47795707 47796278 L1PA17 2846 + 2299 2693 118072 88 184 6 8 0 13 54 7 9 25 23 15 15 2 1 56 2 0 8 4 3 32 1 0 17 1 0 44 chain 207884 chr16 90354753 + 47801560 47804068 L1P2 5180 + 2 3232 18649 86 0 729 173 7 5 415 0 1 904 9 4 641 6 7 222 1 0 15 1 0 28 chain 350399 chr16 90354753 + 47804549 47808844 L1P2 5180 - 10 4771 11590 34 1 0 47 1 0 224 0 485 1191 1 0 94 0 1 397 0 3 368 30 8 752 18 17 536 2 0 206 5 20 222 1 0 50 1 0 69 8 0 37 chain 89667 chr16 90354753 + 47834335 47835838 L1PA11 4918 + 3326 4567 39758 339 0 1 30 277 37 183 1 0 412 1 0 67 1 0 12 2 0 68 3 1 12 2 1 20 21 11 10 14 10 12 3 2 13 chain 61301 chr16 90354753 + 47841208 47841886 L1PA4 6152 - 1 678 52207 339 1 0 338 chain 510901 chr16 90354753 + 47841886 47848017 L1PA2 6032 - 4 6031 6079 719 0 1 128 0 4 70 0 1 4 1 0 1713 1 0 323 6 4 931 2 0 1352 134 10 57 1 8 124 0 1 110 4 5 145 0 1 4 1 0 57 1 0 82 20 32 141 chain 70200 chr16 90354753 + 47871209 47871988 L1PA3long 6157 - 580 1359 48308 779 chain 51943 chr16 90354753 + 47871989 47872563 L1PA3long 6157 + 5575 6149 57652 574 chain 281482 chr16 90354753 + 47873073 47876722 HERVH-int 3825 + 0 3825 14564 5 0 1 356 6 18 93 0 4 13 2 0 68 0 208 13 2 1 327 0 1 78 8 1 42 16 1 200 9 0 377 7 22 579 0 1 5 5 4 618 0 1 49 0 3 37 23 8 69 31 5 413 1 7 197 chain 30125 chr16 90354753 + 47893487 47893883 MLT2A1 477 + 2 401 84399 140 0 1 26 0 4 51 0 1 95 8 7 68 2 0 6 chain 8780 chr16 90354753 + 47894886 47895007 MER6 865 + 225 342 166763 8 4 0 109 chain 75982 chr16 90354753 + 47898369 47899337 LTR5_Hs 974 + 0 974 45495 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 21429 chr16 90354753 + 47901716 47902059 Tigger4b 360 + 1 360 122413 19 2 9 12 0 3 7 3 0 6 18 11 52 0 11 82 0 2 82 5 0 10 1 8 5 0 1 39 chain 24474 chr16 90354753 + 47916815 47917290 L1PB1 5432 + 4988 5420 107681 98 0 5 12 1 2 9 17 0 24 1 0 8 1 0 12 4 0 11 3 1 50 2 1 16 1 0 36 8 7 12 18 5 30 31 26 17 1 0 21 1 0 13 1 0 16 chain 508022 chr16 90354753 + 47930764 47937166 L1PA6 6164 + 4 6154 6320 192 0 1 41 0 2 278 0 2 49 1 0 1627 0 2 128 3 4 239 5 6 222 0 4 359 0 6 13 5 0 8 5 4 79 0 1 35 279 0 322 1 2 70 4 6 839 1 0 175 9 16 315 0 1 263 0 3 147 6 3 20 0 3 522 3 4 137 chain 531351 chr16 90354753 + 47943819 47949903 L1PA5 6144 + 14 6132 4035 106 0 14 146 0 1 187 0 4 1543 0 1 365 0 4 135 0 3 1822 0 4 943 0 3 590 1 0 96 9 10 141 chain 46472 chr16 90354753 + 47961546 47962286 LTR12_ 688 - 0 688 61617 24 0 1 115 110 7 87 15 13 76 0 1 49 2 10 122 3 5 47 0 41 90 chain 62747 chr16 90354753 + 47984619 47985411 LTR12 884 + 0 884 51560 277 0 90 9 2 0 74 1 2 340 0 3 89 chain 557570 chr16 90354753 + 48049376 48055400 L1PA2 6032 - 0 6031 547 1802 0 4 3189 0 3 1033 chain 7548 chr16 90354753 + 48091079 48091235 MER58A 224 - 16 175 173887 31 10 11 14 32 34 69 chain 91520 chr16 90354753 + 48092447 48093581 SVA_A 1864 - 0 1499 39125 532 0 258 53 3 0 34 9 7 30 9 7 57 1 0 14 3 0 52 1 4 70 1 39 130 0 77 135 chain 3783 chr16 90354753 + 48094701 48094745 U5 65 + 0 44 210618 44 chain 23762 chr16 90354753 + 48101012 48101380 THE1B 368 + 0 366 111693 169 1 0 22 2 4 5 3 0 10 0 4 14 24 21 57 7 6 54 chain 28214 chr16 90354753 + 48103472 48103770 AluYf4 310 - 12 310 92258 298 chain 2643 chr16 90354753 + 48173593 48173647 MLT1J 494 + 87 141 231118 5 0 1 24 12 11 13 chain 15641 chr16 90354753 + 48177445 48177735 THE1B 368 + 7 306 139464 101 12 13 17 0 4 27 1 0 5 24 31 4 1 0 4 0 1 10 10 9 9 2 1 63 chain 4616 chr16 90354753 + 48178128 48178200 MER63D 473 + 4 83 199453 16 2 11 7 2 0 45 chain 10550 chr16 90354753 + 48186890 48187017 MER50 708 + 473 601 158045 30 0 1 97 chain 36479 chr16 90354753 + 48197641 48198064 MER41A 554 - 127 554 74266 18 0 4 405 chain 28399 chr16 90354753 + 48202613 48202966 L1PA8 5853 + 5506 5852 91586 58 2 1 43 2 0 71 1 0 12 1 0 53 1 0 16 1 0 92 chain 34967 chr16 90354753 + 48203451 48203837 L1PA5 6144 + 5758 6144 76233 386 chain 24500 chr16 90354753 + 48225599 48225892 L1PA4 6152 + 5850 6152 107542 255 0 3 28 0 6 10 chain 28745 chr16 90354753 + 48263364 48263674 AluYb8 318 - 8 318 90150 310 chain 9626 chr16 90354753 + 48270836 48270960 MER85 139 + 6 139 162464 83 0 10 11 1 0 29 chain 48277 chr16 90354753 + 48272992 48274002 L1PA11 4918 + 3867 4564 60264 167 0 8 32 306 4 29 5 6 149 0 8 54 14 4 65 2 1 78 2 0 17 1 0 19 4 0 9 31 22 15 1 0 10 chain 148011 chr16 90354753 + 48275282 48276972 L1PA5 6144 + 4459 6144 24876 1218 0 2 5 2 0 307 1 0 5 4 0 148 chain 78395 chr16 90354753 + 48297737 48298780 MER11C 1089 - 30 1089 44325 21 0 1 117 1 0 54 0 1 127 0 1 38 1 0 4 7 12 105 16 15 62 1 0 115 1 0 65 0 4 57 4 13 247 chain 3121 chr16 90354753 + 48318716 48318753 MER82 654 + 594 631 222523 37 chain 30601 chr16 90354753 + 48323064 48323459 MER4A1 472 - 0 427 83199 216 7 32 89 1 7 60 0 1 22 chain 47454 chr16 90354753 + 48347732 48348486 L1PA11 4918 - 289 1000 60865 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 28 48 35 16 1 0 13 2 0 62 8 6 82 6 0 13 0 4 292 7 0 98 chain 7577 chr16 90354753 + 48348495 48348582 L1PA11 4918 + 3803 3890 173689 87 chain 8399 chr16 90354753 + 48356080 48356209 MER85 139 + 0 139 168860 96 21 31 12 chain 10644 chr16 90354753 + 48359393 48359785 L1MA6 2487 - 85 411 157627 4 1 0 20 3 0 11 118 72 4 1 0 14 12 10 35 42 31 56 10 11 53 3 0 5 chain 3435 chr16 90354753 + 48430489 48430527 MER58B 340 + 293 331 216492 38 chain 36199 chr16 90354753 + 48434460 48434864 SVA_C 1631 - 0 402 74627 15 2 0 387 chain 20899 chr16 90354753 + 48435415 48435653 AluSp 311 + 10 265 124276 158 0 17 80 chain 4770 chr16 90354753 + 48435847 48435985 MER3 215 - 70 202 197683 20 5 1 28 53 51 32 chain 118453 chr16 90354753 + 48450093 48451457 SVA_B 1603 - 0 1602 31630 330 1 0 186 0 241 90 0 4 708 22 22 7 6 0 14 chain 3931 chr16 90354753 + 48495750 48495797 MER44D 709 + 63 110 208410 47 chain 9419 chr16 90354753 + 48496646 48496788 L1MB5 1630 - 510 653 163465 62 14 15 66 chain 186536 chr16 90354753 + 48497513 48499745 L1P1 4361 - 1599 4357 20376 60 6 7 247 2 0 7 7 9 614 1 2 737 2 1 164 1 0 292 5 530 42 0 1 45 chain 29672 chr16 90354753 + 48500067 48500377 AluYa5 310 - 0 310 85945 310 chain 111618 chr16 90354753 + 48506427 48507689 L1PA5 6144 - 0 1260 33771 8 2 0 753 1 0 244 0 1 254 chain 54050 chr16 90354753 + 48507689 48508294 L1PA5 6144 + 4259 4872 56325 399 2 0 170 0 10 34 chain 123889 chr16 90354753 + 48516347 48517772 SVA_B 1603 - 0 1602 29737 575 0 1 145 7 45 133 0 116 544 0 22 21 chain 108070 chr16 90354753 + 48542430 48543751 LTR12C 1709 + 0 1709 34696 190 4 0 92 0 17 165 0 2 293 1 0 41 2 318 106 11 4 162 1 0 4 0 1 13 4 8 17 0 58 20 0 4 25 1 0 169 chain 3348 chr16 90354753 + 48597917 48597991 L1MA5A 2387 - 123 180 218087 34 11 0 11 6 0 12 chain 21386 chr16 90354753 + 48638941 48639242 AluSp 311 - 13 311 122565 16 4 1 189 1 2 32 6 7 25 2 0 26 chain 20641 chr16 90354753 + 48650886 48651132 AluY 311 + 57 300 125155 72 3 0 171 chain 6213 chr16 90354753 + 48656285 48656375 MER50B 698 + 482 567 183477 24 9 4 57 chain 17411 chr16 90354753 + 48656880 48657114 L1PA8 5853 - 0 228 134474 93 1 0 15 2 1 54 1 0 8 1 0 37 2 0 20 chain 117953 chr16 90354753 + 48659088 48660507 L1PA8 5853 - 0 1432 31820 92 2 1 19 2 1 47 13 11 74 2 0 46 9 8 545 2 0 529 0 22 37 chain 5737 chr16 90354753 + 48665861 48665965 L1PA16 3655 + 3487 3590 187767 44 16 18 29 3 0 12 chain 511534 chr16 90354753 + 48695854 48702686 L1PA6 6164 - 10 6164 6023 349 416 0 489 0 1 230 0 2 404 0 1 198 1 2 30 0 7 353 3 4 205 0 1 56 0 1 414 0 3 172 0 1 41 5 6 592 6 10 255 1 3 134 321 0 666 0 1 33 0 9 333 0 1 18 0 1 181 0 23 357 1 0 100 1 0 467 chain 25463 chr16 90354753 + 48696266 48696592 L1PA6 6164 - 4 331 102390 243 0 1 83 chain 20258 chr16 90354753 + 48714091 48714339 L1PA7 6471 + 6217 6465 126350 96 0 1 120 1 0 31 chain 130782 chr16 90354753 + 48734567 48736423 L1PA16 3655 - 36 1865 27911 14 56 29 83 0 1 82 2 0 120 6 4 82 1 0 282 1 0 24 2 1 221 2 1 344 26 35 6 2 0 257 0 1 23 9 8 137 2 3 66 1 0 5 chain 18808 chr16 90354753 + 48740849 48741122 MSTA 426 - 0 290 130654 109 1 21 47 19 17 27 1 0 69 chain 83516 chr16 90354753 + 48756192 48757182 L1P1 4361 + 3303 4305 42113 469 0 1 81 0 11 283 1 0 138 0 1 18 chain 137974 chr16 90354753 + 48757530 48759198 L1PA6 6164 + 4315 6162 26485 157 1 8 820 9 6 290 6 15 208 7 8 41 0 165 129 chain 505952 chr16 90354753 + 48792602 48798778 L1PA6 6164 + 0 6160 6469 249 44 14 30 0 1 118 0 1 96 2 1 736 17 17 505 0 1 350 0 3 35 0 6 17 1 0 145 0 1 233 1 0 623 9 11 28 5 4 14 2 1 290 2 0 329 0 1 108 20 0 47 1 22 1315 0 2 125 0 3 349 0 1 107 5 6 205 3 0 10 chain 557601 chr16 90354753 + 48802482 48808514 L1PA2 6032 - 0 6031 543 5 2 0 8 2 0 168 0 2 2079 0 1 3768 chain 14072 chr16 90354753 + 48809257 48809611 THE1B 368 - 0 368 144316 47 18 21 14 0 1 4 6 5 33 62 68 6 1 0 44 43 44 41 0 5 35 chain 29040 chr16 90354753 + 48816877 48817185 AluYa5 310 - 3 310 88808 181 1 0 126 chain 70874 chr16 90354753 + 48818861 48819652 L1PA4 6152 + 5359 6151 47973 593 0 1 198 chain 25729 chr16 90354753 + 48821134 48821421 L1PA2 6032 - 2 289 101166 287 chain 5683 chr16 90354753 + 48821774 48821846 L1ME1 1623 - 1288 1360 188262 72 chain 17205 chr16 90354753 + 48839389 48839579 AluYf4 310 + 120 310 135026 190 chain 6442 chr16 90354753 + 48843106 48843288 L1MC1 2226 + 1992 2149 181691 53 53 41 17 3 1 18 17 7 6 1 0 14 chain 18518 chr16 90354753 + 48861643 48861899 L1PB2 3958 + 3587 3838 131450 30 1 0 64 1 0 72 2 0 21 2 1 63 chain 6474 chr16 90354753 + 48907489 48907576 L1PA17 2846 + 2608 2693 181440 24 1 0 17 1 0 44 chain 77539 chr16 90354753 + 48948812 48949759 L1PA7 6471 - 12 956 44718 142 1 0 555 1 0 141 1 0 106 chain 143672 chr16 90354753 + 48985041 48986665 SVA_F 1814 + 6 1811 25535 691 0 80 111 1 0 5 0 1 52 0 16 49 0 78 489 0 1 218 0 6 8 chain 50326 chr16 90354753 + 48988070 48988671 L1PA7 6471 - 6 604 58766 7 3 0 109 0 3 24 1 0 7 1 0 42 1 0 406 chain 79979 chr16 90354753 + 49019926 49020943 MER11A 1151 - 0 1133 43606 60 7 6 171 0 1 54 1 15 9 7 0 156 1 0 120 1 0 232 0 2 20 0 11 66 1 0 74 0 99 37 chain 9759 chr16 90354753 + 49036088 49036190 AluYa8 305 + 203 305 161801 102 chain 537806 chr16 90354753 + 49062602 49068756 L1PA5 6144 + 0 6144 3181 324 1 5 483 17 0 705 1 0 1317 0 1 341 1 0 325 2 1 180 1 0 430 0 1 231 0 4 464 13 14 1318 chain 16477 chr16 90354753 + 49125551 49125819 L1PA17 2846 + 2437 2693 136990 65 4 0 15 11 6 12 1 0 57 2 0 8 1 0 32 1 0 7 0 3 7 1 0 44 chain 66529 chr16 90354753 + 49133084 49133921 L1PB1 5432 - 343 1183 49853 65 0 1 206 9 6 103 5 4 82 0 1 108 0 2 250 0 3 9 chain 29289 chr16 90354753 + 49138214 49138524 AluYg6 310 - 0 310 87623 310 chain 239368 chr16 90354753 + 49168010 49170662 L1PA3long 6157 - 0 2657 16805 1138 0 1 660 0 4 854 chain 60728 chr16 90354753 + 49187059 49187752 L1PA5 6144 + 5415 6138 52456 93 0 30 600 chain 138546 chr16 90354753 + 49243567 49245144 SVA_D 2077 - 0 2056 26386 517 2 1 114 0 1 19 0 403 37 0 38 30 2 1 13 1 0 12 0 40 830 chain 28986 chr16 90354753 + 49258279 49258583 AluYa5 310 - 6 310 89060 304 chain 520591 chr16 90354753 + 49262014 49268147 L1PA5 6144 + 0 6144 5097 135 6 20 172 0 1 201 0 1 20 0 5 473 1 2 4 1 0 135 9 0 257 2 1 2081 0 1 163 14 13 943 1 0 1005 0 1 510 chain 56211 chr16 90354753 + 49297277 49297947 L1PA7 6471 - 2 672 55014 10 2 0 72 0 1 419 0 1 167 chain 48684 chr16 90354753 + 49298396 49299162 L1PB1 5432 + 4685 5420 59969 13 0 1 9 0 1 265 0 1 125 16 14 20 1 0 12 1 0 12 5 1 9 2 0 52 2 1 16 1 0 43 1 0 15 15 2 30 7 4 15 2 0 24 1 0 21 1 0 13 1 0 16 chain 5341 chr16 90354753 + 49377278 49377382 MLT1F 544 + 131 237 191635 21 28 30 55 chain 30955 chr16 90354753 + 49401806 49402332 MER4D 903 + 146 681 82593 72 0 2 131 82 81 27 0 1 132 0 6 24 9 17 22 4 0 4 3 0 16 chain 3418 chr16 90354753 + 49403112 49403153 MER4D 903 + 159 200 216794 41 chain 43298 chr16 90354753 + 49413710 49414235 MLT2A2 560 + 0 539 65055 194 1 4 204 0 11 126 chain 74199 chr16 90354753 + 49414537 49415350 L1PA3long 6157 - 993 1806 46364 813 chain 88840 chr16 90354753 + 49415350 49416330 L1PA3long 6157 + 5171 6152 40065 135 0 1 845 chain 3113 chr16 90354753 + 49418538 49418578 L1M4c 1769 + 758 798 222677 40 chain 63317 chr16 90354753 + 49421365 49422416 L1PREC2 3366 - 1539 2430 51312 28 0 3 7 0 1 198 14 0 12 0 3 60 5 0 50 28 37 119 4 3 21 152 0 36 6 2 311 chain 22177 chr16 90354753 + 49426718 49427071 THE1B 368 + 0 368 119461 63 18 19 86 6 5 19 16 22 13 1 11 6 1 0 124 chain 3234 chr16 90354753 + 49500048 49500104 MER90 571 - 3 57 220349 37 4 3 9 1 0 5 chain 23284 chr16 90354753 + 49650089 49650535 L1MA3 4352 + 3937 4322 114285 154 61 36 103 4 0 30 2 0 22 1 0 6 1 0 11 38 10 13 chain 28026 chr16 90354753 + 49679574 49679953 THE1C 375 + 0 375 92906 169 1 0 10 0 3 12 10 4 177 chain 24774 chr16 90354753 + 49702980 49703269 AluSp 311 + 22 311 106031 289 chain 5825 chr16 90354753 + 49729814 49729887 MIR 256 - 78 153 186898 16 0 2 57 chain 2947 chr16 90354753 + 49805057 49805088 THE1B 368 + 13 44 226175 31 chain 3116 chr16 90354753 + 49853229 49853263 MER3 215 + 181 215 222610 34 chain 56150 chr16 90354753 + 49912302 49912955 L1PA5 6144 - 0 668 55038 14 0 3 16 0 11 112 0 1 511 chain 25129 chr16 90354753 + 49972236 49972553 THE1B 368 - 0 313 104134 174 3 0 21 0 1 5 7 5 107 chain 29117 chr16 90354753 + 49979406 49979710 AluYa5 310 - 6 310 88474 304 chain 2615 chr16 90354753 + 49989728 49989758 MER58D 378 + 326 356 231495 30 chain 7391 chr16 90354753 + 50015545 50015650 MLT2B4 540 - 427 540 174827 73 5 13 27 chain 8357 chr16 90354753 + 50017714 50017810 MER44A 345 - 104 200 169091 96 chain 4761 chr16 90354753 + 50022536 50022591 MER107 203 + 15 70 197804 55 chain 7269 chr16 90354753 + 50023207 50023375 L1MB2 1706 + 1536 1694 175659 30 47 36 9 1 0 16 10 12 55 chain 10853 chr16 90354753 + 50025705 50025946 MER44A 345 - 25 234 156769 26 68 33 21 9 8 51 1 5 65 chain 5960 chr16 90354753 + 50031392 50031731 MLT1B 390 + 21 352 185596 29 244 237 13 1 0 52 chain 14285 chr16 90354753 + 50051578 50051772 MER1B 344 + 113 304 143608 103 4 0 55 4 5 28 chain 9898 chr16 90354753 + 50052192 50052393 L1PB1 5432 + 5241 5422 161077 39 1 0 16 22 12 18 3 1 5 1 0 14 2 0 24 1 0 22 4 3 9 1 0 14 1 0 4 chain 25520 chr16 90354753 + 50061145 50061437 AluY 311 + 7 301 102140 118 0 2 174 chain 23114 chr16 90354753 + 50078996 50079291 AluSg 306 + 11 300 115069 42 11 5 242 chain 2939 chr16 90354753 + 50091259 50091299 LTR37B 484 - 444 484 226349 4 1 0 5 0 1 30 chain 4042 chr16 90354753 + 50103744 50103797 MIR 256 + 134 185 206764 16 2 0 35 chain 7785 chr16 90354753 + 50132175 50132266 HY4 93 + 1 93 172384 73 0 1 18 chain 28138 chr16 90354753 + 50150359 50150738 L1MA5A 2387 + 998 1372 92512 39 2 0 265 10 6 20 0 1 43 chain 9141 chr16 90354753 + 50168852 50169077 ERVL-B4-int 2334 - 1935 2165 164856 17 0 2 15 95 98 98 chain 5825 chr16 90354753 + 50173321 50173397 MER44D 709 - 135 214 186903 21 0 3 55 chain 7073 chr16 90354753 + 50177704 50177792 Tigger2b_Pri 1066 + 173 261 176933 88 chain 13015 chr16 90354753 + 50201025 50201236 MER30 238 - 2 238 148188 36 4 1 68 8 25 60 13 24 22 chain 5513 chr16 90354753 + 50208967 50209065 L1MA4 2864 - 177 270 189912 12 8 5 11 0 1 4 1 0 11 2 0 49 chain 3117 chr16 90354753 + 50231172 50231207 MER57B1 401 - 0 35 222606 35 chain 3715 chr16 90354753 + 50291263 50291337 L1MA7 2200 + 2011 2079 211701 20 4 10 9 12 0 29 chain 2974 chr16 90354753 + 50294326 50294357 MLT1K 546 - 106 137 225549 31 chain 52615 chr16 90354753 + 50313810 50314532 L1PREC2 3366 - 1590 2314 57230 182 1 5 89 4 5 25 0 2 52 6 5 102 0 3 20 8 1 233 chain 522532 chr16 90354753 + 50377250 50383312 L1PA5 6144 + 0 6144 4910 120 0 14 187 0 3 178 1 40 315 0 4 308 9 0 577 1 0 1430 1 0 64 0 4 240 0 7 537 5 6 1329 1 5 9 0 1 180 0 1 251 0 1 40 1 10 265 2 7 11 chain 15541 chr16 90354753 + 50386427 50386746 L1MA6 2487 - 266 593 139762 97 2 9 44 87 76 10 0 13 39 1 0 39 chain 6706 chr16 90354753 + 50393551 50393631 HY3 101 + 20 100 179637 80 chain 5949 chr16 90354753 + 50419161 50419299 LTR16C 481 + 179 326 185691 47 37 57 36 11 0 7 chain 18841 chr16 90354753 + 50426061 50426421 THE1B 368 - 0 366 130541 43 20 19 53 71 77 53 5 3 6 0 3 109 chain 42470 chr16 90354753 + 50430451 50430991 MLT2A2 560 - 0 558 66049 147 3 14 167 0 3 42 5 4 31 0 5 145 chain 12305 chr16 90354753 + 50468335 50468489 MER41A 554 - 400 554 150995 154 chain 4065 chr16 90354753 + 50468897 50468950 LTR26B 539 + 457 512 206412 47 0 2 6 chain 2831 chr16 90354753 + 50510178 50510304 MIRb 242 - 28 160 228204 17 80 86 29 chain 26482 chr16 90354753 + 50521669 50522028 THE1B 368 - 0 368 98110 75 1 0 101 5 1 19 1 0 112 1 16 44 chain 44752 chr16 90354753 + 50528599 50529156 MER41A 554 + 0 554 63330 430 0 1 6 4 0 117 chain 5143 chr16 90354753 + 50604421 50604499 MIRb 242 + 57 132 193622 10 2 0 14 1 0 51 chain 4714 chr16 90354753 + 50627607 50627719 MER53 195 - 1 112 198347 53 43 42 16 chain 5416 chr16 90354753 + 50638104 50638182 MIRc 230 + 51 129 190834 60 5 5 13 chain 3193 chr16 90354753 + 50663248 50663285 MLT1A 405 - 328 365 221056 37 chain 29898 chr16 90354753 + 50685323 50685639 AluYb8 318 - 2 318 85110 316 chain 3034 chr16 90354753 + 50685951 50685984 MLT1H2 457 - 338 371 224321 33 chain 3165 chr16 90354753 + 50686155 50686188 MLT1H2 457 - 338 371 221658 33 chain 20039 chr16 90354753 + 50716127 50716394 L1PA8 5853 - 0 262 127009 93 1 0 19 2 1 61 4 3 68 2 0 17 chain 100075 chr16 90354753 + 50761269 50762536 HSMAR1 1287 - 1 1287 36756 378 0 3 143 0 4 14 3 0 72 8 11 205 3 15 441 chain 71611 chr16 90354753 + 50788408 50789931 L1PB1 5432 - 9 1114 47651 5 1 0 14 1 0 12 1 0 22 1 0 24 58 44 6 3 0 15 1 0 44 1 0 18 1 0 24 5 0 27 2 0 9 5 1 14 1 0 10 1 0 20 416 16 122 0 1 53 0 2 258 11 3 37 0 1 85 8 28 53 1 4 133 chain 3740 chr16 90354753 + 50809601 50809670 MER103C 291 - 114 186 211338 33 6 8 13 1 2 16 chain 43939 chr16 90354753 + 50849560 50850112 MER41A 554 - 0 554 64276 31 9 10 421 0 1 91 chain 5010 chr16 90354753 + 50889895 50890119 L1MB3 1562 - 447 689 195019 41 149 167 34 chain 6926 chr16 90354753 + 50914206 50914339 MER20 218 - 78 195 177990 54 17 13 42 12 0 8 chain 5527 chr16 90354753 + 50945869 50945940 MER58D 378 - 10 81 189776 71 chain 27936 chr16 90354753 + 50961476 50961789 AluYa5 310 - 5 310 93217 120 4 0 62 4 0 123 chain 14277 chr16 90354753 + 50976823 50976984 L1PA3long 6157 + 5994 6157 143629 101 0 2 60 chain 4758 chr16 90354753 + 50990402 50990544 MER20 218 - 87 218 197824 38 11 13 17 1 0 11 50 38 14 chain 4435 chr16 90354753 + 50998875 50998945 MER53 195 - 15 86 201517 43 5 6 22 chain 16204 chr16 90354753 + 51041301 51041496 L1PA14 3548 + 348 543 137738 195 chain 11826 chr16 90354753 + 51050690 51050835 L1PB4 2604 + 2377 2526 152919 7 0 4 138 chain 100217 chr16 90354753 + 51062778 51063888 L1PA4 6152 - 1 1112 36716 845 0 1 265 chain 22446 chr16 90354753 + 51088584 51088939 THE1B 368 - 0 367 118271 30 9 10 16 7 6 66 26 39 29 1 0 171 chain 23219 chr16 90354753 + 51092714 51093232 L1PB1 5432 + 4971 5427 114605 128 47 15 19 1 0 13 1 0 11 8 4 6 2 0 53 2 1 10 2 5 45 7 6 11 58 42 8 2 0 22 1 0 21 1 0 13 1 0 18 2 0 5 chain 26951 chr16 90354753 + 51098784 51099137 L1PA8 5853 - 0 345 96447 93 4 0 16 1 0 42 0 2 8 6 5 5 1 0 72 2 0 46 1 0 56 chain 9489 chr16 90354753 + 51114498 51114601 L1HS 6032 - 5 108 163119 103 chain 5380 chr16 90354753 + 51116940 51117127 L1MB3 1562 + 1362 1524 191196 53 108 83 26 chain 47690 chr16 90354753 + 51124608 51125157 L1PA5 6144 + 5597 6144 60703 214 2 1 73 1 0 259 chain 24338 chr16 90354753 + 51157120 51157400 AluSp 311 - 20 300 108432 280 chain 21657 chr16 90354753 + 51207039 51207304 AluSp 311 + 0 264 121551 37 1 0 227 chain 29284 chr16 90354753 + 51255153 51255464 AluYb9 318 + 0 311 87644 311 chain 106984 chr16 90354753 + 51263815 51265189 L1PA8 5853 + 4473 5853 34975 537 2 0 339 3 15 200 1 0 46 2 0 130 2 1 19 1 0 5 0 1 87 chain 530193 chr16 90354753 + 51282827 51288962 L1PA4 6152 - 9 6151 4168 315 1 0 1457 0 1 680 0 1 433 0 4 745 0 2 766 0 1 30 1 0 948 0 1 205 1 0 553 chain 19955 chr16 90354753 + 51290257 51290507 L1PA16 3655 + 3313 3563 127287 250 chain 22123 chr16 90354753 + 51291384 51291666 AluSp 311 + 20 300 119684 266 2 0 14 chain 4807 chr16 90354753 + 51292647 51292735 MLT1B 390 + 278 369 197269 40 14 16 23 1 2 10 chain 25311 chr16 90354753 + 51301847 51302206 THE1D 372 - 0 372 103169 128 0 6 45 1 0 16 9 8 94 11 20 55 chain 3839 chr16 90354753 + 51303541 51303608 MLT1I 406 - 242 311 209802 18 10 12 39 chain 6194 chr16 90354753 + 51341122 51341199 MLT2D 439 - 361 438 183626 77 chain 539192 chr16 90354753 + 51363727 51369865 L1PA5 6144 + 0 6142 2949 1163 0 3 1213 0 4 793 1 0 784 0 1 783 1 0 231 0 1 1159 3 0 7 chain 29175 chr16 90354753 + 51376304 51376614 AluYf4 310 - 0 310 88180 310 chain 256686 chr16 90354753 + 51405494 51408321 L1PA3long 6157 + 3330 6156 15899 1427 1 0 1399 chain 121190 chr16 90354753 + 51455521 51457067 THE1A-int 1579 - 5 1579 30637 135 0 23 253 24 21 67 0 1 427 4 3 85 14 21 463 6 7 68 chain 377057 chr16 90354753 + 51513179 51517560 L1PA6 6164 - 6 4404 10845 196 0 3 221 0 2 110 0 3 944 0 1 1298 3 4 186 0 1 78 0 1 89 0 1 307 0 3 376 0 1 573 chain 518368 chr16 90354753 + 51550548 51556820 L1PA7 6471 + 5 6452 5340 172 0 149 74 0 3 9 4 1 122 3 10 74 6 7 236 1 0 1305 0 1 462 0 3 26 8 0 368 0 11 446 13 14 30 0 1 43 6 5 34 0 1 221 1 2 28 0 14 126 5 0 450 1 2 470 0 1 73 1 0 97 1 0 526 11 9 410 0 1 143 0 1 266 chain 21022 chr16 90354753 + 51561979 51562329 THE1B 368 + 0 356 123841 106 16 17 53 40 38 18 0 8 59 2 0 11 1 2 44 chain 4044 chr16 90354753 + 51585384 51585428 THE1A 353 - 52 96 206744 44 chain 3726 chr16 90354753 + 51604261 51604320 MER96B 391 + 270 327 211548 16 0 2 6 4 0 33 chain 18217 chr16 90354753 + 51642140 51642503 THE1D 372 - 10 372 132290 25 2 1 90 28 36 65 42 43 24 34 25 53 chain 28039 chr16 90354753 + 51652822 51653119 AluYa5 310 - 14 310 92860 170 1 0 126 chain 3048 chr16 90354753 + 51715323 51715376 MER51A 677 + 199 343 224042 31 4 95 18 chain 28751 chr16 90354753 + 51738300 51738612 AluYa5 310 + 0 308 90113 126 4 0 182 chain 3574 chr16 90354753 + 51750222 51750264 MER63A 208 - 80 122 214082 42 chain 29742 chr16 90354753 + 51808756 51809140 MLT2A1 477 - 84 477 85688 8 6 0 182 0 9 21 0 4 26 0 1 58 0 1 83 chain 5771 chr16 90354753 + 51842612 51842694 MLT1B 390 - 27 108 187431 41 1 0 40 chain 6737 chr16 90354753 + 51860078 51860176 Tigger1a_Art 216 - 72 167 179424 9 2 1 79 2 0 6 chain 4423 chr16 90354753 + 51908004 51908070 L1PB1 5432 + 5360 5423 201662 10 1 0 21 1 0 13 1 0 19 chain 8460 chr16 90354753 + 51929616 51929706 L1PA4 6152 + 6061 6151 168513 90 chain 32597 chr16 90354753 + 51930476 51930951 Tigger3b 1229 - 31 497 79855 27 7 3 24 5 1 28 20 19 62 0 1 85 1 0 216 chain 28547 chr16 90354753 + 51957130 51957474 L1PA7 6471 - 1 345 90978 12 1 2 274 0 1 50 2 0 5 chain 12183 chr16 90354753 + 51968431 51968578 MLT1B 390 + 231 378 151482 147 chain 3610 chr16 90354753 + 51975160 51975214 L1MA4 2864 + 2749 2801 213479 18 2 0 34 chain 18659 chr16 90354753 + 51982735 51982975 L1PA2 6032 + 5684 5916 131052 139 9 1 92 chain 29855 chr16 90354753 + 52004421 52004738 AluYb8 318 - 0 318 85260 45 0 1 272 chain 45376 chr16 90354753 + 52031663 52032295 LTR12_ 688 + 0 657 62625 30 3 4 43 5 71 20 47 5 484 chain 536466 chr16 90354753 + 52041506 52047673 L1PA4 6152 - 0 6152 3381 16 3 0 8 1 0 315 0 1 2571 4 0 663 0 1 1083 18 0 39 0 4 11 0 1 275 0 3 511 0 1 649 chain 254857 chr16 90354753 + 52051689 52054579 L1PA4 6152 + 3229 6136 15992 283 1 0 836 0 4 77 3 4 157 6 5 883 0 1 424 0 13 220 chain 54216 chr16 90354753 + 52121270 52122026 MER4E 760 + 0 760 56214 22 3 0 129 22 25 101 6 4 81 1 3 81 4 8 81 6 9 47 0 4 97 11 4 64 chain 13512 chr16 90354753 + 52134498 52134826 L1MA3 4352 - 24 319 146313 13 1 0 27 1 0 6 1 0 24 2 0 23 40 36 57 1 0 8 69 46 55 chain 99553 chr16 90354753 + 52180866 52181997 L1PA4 6152 - 1 1137 36895 233 8 12 130 0 1 760 chain 21706 chr16 90354753 + 52185380 52185608 AluYd8 298 - 0 228 121368 228 chain 69218 chr16 90354753 + 52188778 52189574 L1PA5 6144 - 5 799 48713 142 1 0 4 2 0 32 0 1 615 chain 426174 chr16 90354753 + 52190676 52195819 L1P2 5180 - 7 5178 9394 37 1 0 46 1 0 443 2 6 614 0 1 816 0 1 51 7 12 104 5 6 709 25 0 392 13 14 763 1 0 4 0 10 131 0 18 26 0 1 170 0 15 220 1 0 48 0 1 267 1 0 10 0 2 41 1 0 43 2 1 148 chain 64153 chr16 90354753 + 52208833 52209526 L1PA2 6032 + 5333 6026 50938 693 chain 261432 chr16 90354753 + 52229195 52232126 L1PA4 6152 - 6 2938 15621 253 0 1 591 2 0 213 0 1 1148 0 1 724 chain 19128 chr16 90354753 + 52250977 52251282 HERVH-int 3825 - 259 770 129750 20 10 6 169 41 251 65 chain 5637 chr16 90354753 + 52289379 52289453 MADE1 96 + 0 90 188685 37 2 18 35 chain 6251 chr16 90354753 + 52303465 52303544 MER2 342 + 131 210 183159 79 chain 27891 chr16 90354753 + 52311386 52311713 L1PA7 6471 + 6140 6467 93392 327 chain 8216 chr16 90354753 + 52315758 52315880 MLT1B 390 + 272 386 169850 53 8 0 61 chain 34911 chr16 90354753 + 52358901 52359399 MLT2A2 560 + 15 560 76327 60 0 5 78 23 22 128 6 38 56 0 11 92 0 2 10 2 0 43 chain 5872 chr16 90354753 + 52366947 52367033 MSTD 398 + 297 384 186447 26 4 5 56 chain 526750 chr16 90354753 + 52367325 52373445 L1PA5 6144 + 0 6144 4524 120 1 15 14 20 6 644 3 0 81 0 2 1186 0 1 245 0 1 128 0 1 737 0 1 495 4 1 4 0 1 793 1 0 4 0 1 146 7 8 340 0 1 108 0 1 206 0 4 36 0 1 343 1 9 433 0 7 20 chain 28804 chr16 90354753 + 52414778 52415080 AluYa5 310 - 8 310 89879 302 chain 71665 chr16 90354753 + 52448898 52449753 L1PA7 6471 - 5 857 47622 9 3 0 142 1 0 16 1 2 683 chain 39588 chr16 90354753 + 52453755 52454194 L1PA4 6152 + 5707 6146 69906 439 chain 5847 chr16 90354753 + 52460480 52460548 L1PB4 2604 + 2396 2464 186709 68 chain 14958 chr16 90354753 + 52486435 52486602 L1PA4 6152 + 5985 6152 141449 167 chain 7599 chr16 90354753 + 52555644 52555732 MER5A 189 + 31 119 173548 88 chain 3297 chr16 90354753 + 52618558 52618668 LTR33 499 + 382 491 219032 15 57 56 38 chain 12502 chr16 90354753 + 52627111 52627299 MER30 238 - 13 210 150231 68 18 36 15 7 0 6 2 0 72 chain 26957 chr16 90354753 + 52635874 52636263 THE1D 372 + 0 372 96419 75 19 0 163 14 15 56 3 4 59 chain 2921 chr16 90354753 + 52709662 52709698 MIR 256 + 204 241 226654 4 0 1 32 chain 4168 chr16 90354753 + 52720424 52720486 MER113 458 - 296 354 204997 9 2 0 3 2 0 46 chain 15659 chr16 90354753 + 52732699 52732922 MER30 238 - 2 238 139399 12 0 1 95 10 23 18 1 0 87 chain 4759 chr16 90354753 + 52765790 52766237 LTR12C 1709 + 773 1542 197822 52 157 29 16 197 647 25 chain 7150 chr16 90354753 + 52807401 52807535 L1PB1 5432 + 5226 5342 176405 10 1 0 45 1 0 15 3 0 9 2 1 4 9 0 18 3 0 14 chain 119515 chr16 90354753 + 52825060 52826579 THE1C-int 1605 + 1 1598 31211 12 4 5 109 4 58 108 0 11 141 0 7 307 6 0 174 0 10 22 0 1 577 0 1 5 3 2 47 chain 18629 chr16 90354753 + 52842492 52842765 L1PB2 3958 + 3568 3838 131139 49 6 5 52 9 8 93 2 1 62 chain 10607 chr16 90354753 + 52872307 52872490 L1MC1 2226 - 183 357 157794 63 7 4 9 0 1 51 4 3 23 10 4 16 chain 138483 chr16 90354753 + 52880331 52882345 L1PA7 6471 + 4764 6467 26394 54 0 4 475 2 1 211 311 0 112 0 3 79 1 0 68 2 6 229 6 0 269 0 1 4 12 7 11 13 14 155 chain 22476 chr16 90354753 + 52884403 52884771 THE1D 372 + 1 357 118135 74 19 0 22 7 8 6 1 0 77 6 5 13 20 28 123 chain 22182 chr16 90354753 + 52888373 52888844 L1PA16 3655 - 36 492 119437 16 5 0 7 17 7 4 1 0 7 3 0 30 9 11 17 2 0 14 5 11 76 21 22 43 0 3 6 10 1 54 2 0 23 18 19 43 3 7 35 chain 4352 chr16 90354753 + 52897295 52897366 MADE1 96 + 7 94 202559 17 9 25 45 chain 7286 chr16 90354753 + 52902484 52902691 LTR12 884 + 117 378 175544 22 11 0 12 1 67 32 1 0 26 1 42 18 21 4 12 31 7 19 chain 53062 chr16 90354753 + 52924025 52924725 L1MA3 4352 + 2982 3684 56979 205 18 15 150 0 5 32 1 0 12 1 2 281 chain 148983 chr16 90354753 + 52932937 52934698 L1PA7 6471 - 4 1755 24758 28 11 0 108 0 2 703 6 5 413 1 0 4 0 1 487 chain 8734 chr16 90354753 + 52954355 52954480 LTR45B 484 - 29 146 167008 6 7 0 41 1 0 70 chain 5091 chr16 90354753 + 52960103 52960162 L1PB2 3958 + 3779 3838 194165 59 chain 13211 chr16 90354753 + 52961270 52961443 L1PA7 6471 + 6261 6461 147422 62 7 34 104 chain 4427 chr16 90354753 + 52965737 52965788 MLT1J2 417 + 233 284 201627 51 chain 21278 chr16 90354753 + 52972432 52972763 THE1C 375 + 0 335 122933 58 57 60 49 0 1 167 chain 58939 chr16 90354753 + 52980039 52980844 L1PA8 5853 - 4 832 53435 89 1 0 19 2 1 40 23 21 19 0 7 44 2 0 14 29 37 173 1 3 170 0 9 104 0 3 75 chain 9193 chr16 90354753 + 52980844 52980943 L1PA8 5853 + 4896 4995 164589 99 chain 27706 chr16 90354753 + 52989429 52989990 MSTA 426 + 4 414 94017 24 0 1 71 14 15 26 15 11 54 3 2 146 149 0 20 0 1 39 chain 88339 chr16 90354753 + 53002885 53004180 L1PA15 4387 - 97 1372 40248 8 0 1 11 6 3 49 2 1 10 4 0 22 2 1 27 33 31 22 1 0 17 0 1 153 1 0 41 3 1 64 4 0 15 2 0 318 8 6 66 0 1 5 1 0 200 0 1 43 6 5 16 6 7 129 chain 302056 chr16 90354753 + 53006145 53009939 L1P3 4156 - 358 4153 13321 178 0 1 353 0 1 165 0 6 290 12 6 126 0 2 32 18 0 119 0 2 543 0 13 68 0 1 106 4 5 278 9 8 224 13 13 44 0 4 209 1 2 220 2 1 458 5 4 9 4 1 54 2 1 248 chain 166873 chr16 90354753 + 53032342 53034230 L1PA5 6144 + 4254 6144 22411 215 3 7 41 2 0 777 0 1 4 2 1 844 chain 60480 chr16 90354753 + 53041935 53042896 L1PB1 5432 + 4486 5413 52591 88 0 3 51 4 1 74 0 2 301 0 1 96 1 2 9 3 0 24 2 1 8 1 0 4 0 1 6 5 1 8 2 0 53 2 1 10 11 10 40 7 0 15 1 0 4 45 32 14 2 0 24 1 0 17 5 4 13 1 0 9 chain 34800 chr16 90354753 + 53085281 53085673 L1PA5 6144 + 5734 6126 76476 392 chain 4104 chr16 90354753 + 53092331 53092382 MER82 654 - 462 513 205884 51 chain 12003 chr16 90354753 + 53104797 53104962 L1MB3 1562 - 1350 1519 152183 69 0 2 77 1 3 18 chain 23237 chr16 90354753 + 53107436 53107781 THE1A 353 + 0 353 114510 13 2 0 35 0 1 45 1 0 12 27 28 141 0 9 69 chain 122760 chr16 90354753 + 53107781 53109348 THE1A-int 1579 + 0 1579 30131 175 0 1 92 2 1 459 16 16 186 0 1 14 0 1 132 14 20 19 13 17 445 chain 24754 chr16 90354753 + 53122744 53123036 AluSx4 309 + 1 293 106150 292 chain 23949 chr16 90354753 + 53131758 53132042 AluSq10 312 + 8 293 110632 12 1 2 271 chain 3470 chr16 90354753 + 53149395 53149442 MADE1 96 - 27 96 215812 8 0 22 39 chain 11265 chr16 90354753 + 53158691 53158836 THE1B 368 - 214 368 155172 11 0 4 100 0 5 34 chain 5697 chr16 90354753 + 53180352 53180425 L1MB2 1706 + 1617 1691 188136 16 0 1 57 chain 7671 chr16 90354753 + 53225756 53225951 L1ME1 1623 - 376 572 173093 39 1 0 23 13 15 34 30 31 10 15 14 30 chain 9086 chr16 90354753 + 53262449 53262544 AluYb8 318 - 9 104 165140 95 chain 113101 chr16 90354753 + 53285798 53287494 L1PB1 5432 + 3801 5424 33349 695 7 10 92 15 21 10 12 5 412 0 1 5 2 1 50 71 24 11 26 20 12 2 0 50 2 1 15 1 0 40 5 4 16 1 0 5 45 31 14 2 0 24 1 0 22 0 3 9 1 0 16 1 0 4 chain 207564 chr16 90354753 + 53310765 53314581 L1PB1 5432 + 2561 5427 18675 227 7 8 34 3 0 305 0 8 80 12 16 100 13 0 4 1 0 19 7 6 118 0 4 243 2 3 226 6 5 197 1 5 136 919 0 277 3 0 16 15 21 10 8 5 199 10 12 206 3 2 50 9 4 7 1 0 24 1 0 8 1 0 10 20 15 41 1 0 6 2 1 12 2 5 38 13 14 8 3 0 3 11 0 28 2 0 5 20 17 21 1 0 21 1 0 13 1 0 18 2 0 5 chain 80772 chr16 90354753 + 53312512 53313425 L1PA5 6144 + 5221 6136 43078 72 1 5 587 1 0 110 1 0 141 chain 7934 chr16 90354753 + 53320599 53320866 MER2 342 - 1 258 171419 28 157 147 82 chain 15583 chr16 90354753 + 53337013 53337222 MER30 238 + 0 238 139635 15 0 18 82 4 15 108 chain 23778 chr16 90354753 + 53347582 53347894 AluY 311 + 8 310 111600 45 10 4 64 2 0 180 2 0 9 chain 255955 chr16 90354753 + 53364465 53367347 L1PA4 6152 - 1 2922 15939 5 2 0 143 1 0 5 2 41 555 0 1 16 0 1 5 1 3 1867 1 0 279 chain 523435 chr16 90354753 + 53378343 53384429 L1PA5 6144 - 9 6144 4818 740 0 1 16 0 1 5 10 12 1101 0 2 1156 0 1 524 0 1 137 2 0 988 0 4 90 22 38 149 9 0 252 0 1 81 0 17 670 0 14 134 chain 545756 chr16 90354753 + 53430828 53436825 L1PA3long 6157 + 12 6157 1980 126 0 15 623 0 128 1306 0 2 1880 5 9 1912 1 0 144 chain 26097 chr16 90354753 + 53444842 53445140 AluY 311 + 0 298 99630 24 1 0 108 0 1 165 chain 12008 chr16 90354753 + 53446879 53447123 LTR12D 1347 + 584 751 152166 109 90 13 45 chain 3247 chr16 90354753 + 53453071 53453106 MSTA 426 - 64 99 220057 35 chain 34457 chr16 90354753 + 53453109 53453632 MER41B 635 + 0 522 76984 121 7 11 149 0 1 159 70 64 17 chain 18127 chr16 90354753 + 53455306 53455515 LTR12D 1347 - 1138 1347 132526 209 chain 41611 chr16 90354753 + 53464462 53464998 MER41C 542 + 0 542 67139 231 3 6 77 8 9 72 0 2 145 chain 4922 chr16 90354753 + 53477177 53477244 U6 107 - 37 107 196013 22 2 5 43 chain 20753 chr16 90354753 + 53499627 53500000 LTR57 402 - 0 322 124782 14 1 0 5 0 1 7 16 11 65 1 0 19 60 17 88 5 3 92 chain 23853 chr16 90354753 + 53508241 53508516 AluSp 311 - 25 300 111167 275 chain 23404 chr16 90354753 + 53531673 53531959 AluSg7 307 - 21 307 113626 154 0 1 63 1 0 68 chain 123708 chr16 90354753 + 53546792 53548355 THE1A-int 1579 - 10 1579 29808 156 0 1 94 4 3 94 6 7 273 2 1 54 0 3 628 11 14 241 chain 21299 chr16 90354753 + 53548355 53549032 THE1A 353 - 0 353 122870 18 3 0 5 1 4 91 12 0 37 1 0 67 342 26 54 6 11 40 chain 6900 chr16 90354753 + 53549157 53549241 MLT1B 390 + 263 347 178192 84 chain 143175 chr16 90354753 + 53572452 53574158 SVA_D 2077 + 0 2059 25622 9 3 0 5 0 3 18 3 1 792 80 0 50 0 83 73 1 2 6 0 1 87 0 1 4 0 77 27 0 262 228 0 10 320 chain 3852 chr16 90354753 + 53573282 53573333 SVA_D 2077 + 1177 1315 196159 10 0 1 13 0 86 28 chain 14710 chr16 90354753 + 53579106 53579328 MER30 238 + 0 238 142239 15 7 25 68 4 0 8 9 10 96 0 1 15 chain 14731 chr16 90354753 + 53590945 53591474 MER30 238 - 0 238 142169 106 330 39 93 chain 31594 chr16 90354753 + 53593994 53594406 MER48 407 + 0 407 81503 30 0 1 4 1 0 283 7 2 87 chain 5352 chr16 90354753 + 53596847 53597017 MER4B 649 - 18 247 191517 16 81 81 47 0 62 5 3 0 18 chain 37913 chr16 90354753 + 53603105 53603978 MER41A 554 + 0 554 72266 168 31 21 145 16 8 82 309 9 65 3 2 54 chain 10297 chr16 90354753 + 53608278 53608505 L1MC1 2226 - 47 300 159146 26 16 38 11 3 1 20 24 36 53 2 0 11 5 2 51 1 0 4 chain 3083 chr16 90354753 + 53613807 53613839 MER52D 1964 - 815 847 223291 32 chain 42059 chr16 90354753 + 53616804 53617354 MLT2A2 560 + 0 556 66547 315 14 9 81 1 12 139 chain 130818 chr16 90354753 + 53628493 53630363 L1PB1 5432 - 136 1980 27905 16 3 2 42 1 0 17 1 0 30 23 21 9 5 1 13 1 0 8 1 0 23 48 11 80 19 13 172 1 0 23 0 8 91 0 1 88 0 1 13 0 4 130 0 4 28 6 7 62 1 0 38 0 5 27 1 0 83 0 2 17 0 2 472 3 4 114 0 1 118 0 1 42 chain 104380 chr16 90354753 + 53658705 53660070 SVA_B 1603 + 44 1603 35643 25 1 6 126 0 1 328 0 40 18 1 2 33 6 0 6 13 21 39 22 97 15 23 18 22 6 4 9 2 0 23 12 92 33 8 7 594 chain 3266 chr16 90354753 + 53673575 53673672 MIR 256 + 89 187 219651 19 49 50 29 chain 60156 chr16 90354753 + 53717967 53718663 L1PA4 6152 + 5453 6151 52747 526 23 24 85 0 1 62 chain 29392 chr16 90354753 + 53718694 53719088 L1PA11 4918 + 4090 4475 87108 66 0 1 171 8 0 60 0 1 4 9 7 6 1 0 69 chain 177081 chr16 90354753 + 53731234 53733316 SVA_D 2077 + 0 2077 21244 19 5 6 22 6 0 849 12 54 10 0 1 31 0 1 4 0 1 38 0 2 48 0 1 115 49 0 126 0 1 59 0 1 4 10 9 123 0 1 239 1 0 312 chain 3396 chr16 90354753 + 53732393 53732442 SVA_D 2077 + 1024 1075 60812 10 2 4 37 chain 12907 chr16 90354753 + 53733575 53733752 AluSx1 309 + 127 305 148606 14 14 15 149 chain 9193 chr16 90354753 + 53771217 53771445 Tigger3a 397 - 24 257 164595 20 23 26 34 0 28 15 65 29 64 0 10 7 chain 18487 chr16 90354753 + 53785169 53785391 AluY 311 + 81 301 131541 51 0 1 160 3 0 8 chain 7888 chr16 90354753 + 53791113 53791233 L1MA8 2339 - 60 171 171742 22 1 0 24 2 0 37 6 0 28 chain 10072 chr16 90354753 + 53801304 53801417 L1PA4 6152 + 6030 6143 160209 113 chain 3485 chr16 90354753 + 53815936 53815982 Charlie4z 170 - 26 71 215599 31 1 0 14 chain 23901 chr16 90354753 + 53817252 53817539 AluY 311 + 10 305 110907 58 0 5 59 0 1 6 1 0 140 0 3 23 chain 27992 chr16 90354753 + 53854392 53854702 L1PA2 6032 - 2 313 93022 148 0 1 162 chain 32496 chr16 90354753 + 53953311 53953887 L1PB1 5432 + 4891 5423 80032 104 3 2 106 1 2 9 13 0 24 8 6 14 5 1 9 2 0 48 7 6 14 1 0 45 1 0 15 1 0 6 17 6 18 3 1 5 1 0 14 2 0 24 2 1 20 1 0 13 1 0 19 chain 24491 chr16 90354753 + 54023659 54024035 Tigger2 2703 + 2279 2651 107594 32 0 9 46 12 0 120 0 3 51 8 0 8 0 5 28 6 5 38 1 3 5 2 0 19 chain 23595 chr16 90354753 + 54030553 54031316 THE1C 375 - 39 375 112606 169 435 0 34 0 8 34 14 0 8 1 15 68 chain 9669 chr16 90354753 + 54041108 54041217 L1PA5 6144 + 6023 6132 162245 109 chain 3155 chr16 90354753 + 54049986 54050036 MIR 256 - 95 144 221829 11 5 4 34 chain 24325 chr16 90354753 + 54052421 54052795 THE1C 375 + 0 375 108517 113 0 1 65 0 2 5 17 12 80 14 16 39 13 14 28 chain 20910 chr16 90354753 + 54075059 54075367 THE1D 372 - 37 372 124244 57 0 1 24 0 1 24 0 15 16 27 37 160 chain 566293 chr16 90354753 + 54076008 54082036 L1HS 6032 + 3 6031 132 6028 chain 5118 chr16 90354753 + 54130686 54130748 MLT1A0 366 - 223 285 193887 62 chain 102585 chr16 90354753 + 54191312 54192442 L1PA3long 6157 + 5028 6157 36109 356 1 0 773 chain 9238 chr16 90354753 + 54266244 54266451 L1PB4 2604 + 2251 2455 164358 35 46 48 15 10 11 19 6 0 76 chain 6426 chr16 90354753 + 54276334 54276419 MLT1J2 417 - 293 380 181822 28 1 3 56 chain 60231 chr16 90354753 + 54281483 54282167 L1PA5 6144 - 0 684 52716 684 chain 20801 chr16 90354753 + 54291529 54291848 THE1B 368 + 0 328 124594 169 1 0 17 47 57 85 chain 325015 chr16 90354753 + 54294461 54298445 L1PA7 6471 - 1 3989 12389 609 0 4 59 4 0 86 20 17 317 4 1 49 1 0 311 4 7 1066 11 13 393 5 4 48 1 2 73 1 2 308 1 5 455 1 2 157 chain 22440 chr16 90354753 + 54312973 54313232 AluSc5 308 - 38 297 118296 259 chain 14831 chr16 90354753 + 54330165 54330354 MSTB 430 - 243 430 141838 31 2 0 156 chain 20598 chr16 90354753 + 54411378 54411781 MSTB 430 + 15 415 125301 67 8 9 33 49 47 30 5 1 42 11 10 13 10 11 13 1 0 24 4 7 93 chain 3415 chr16 90354753 + 54444177 54444215 MIR 256 - 148 186 216849 38 chain 28571 chr16 90354753 + 54454106 54454404 AluYa5 310 - 12 310 90864 298 chain 21978 chr16 90354753 + 54486810 54487069 AluY 311 + 39 299 120324 93 0 1 166 chain 16475 chr16 90354753 + 54495289 54495520 MER30 238 - 0 238 136991 48 3 0 65 9 19 106 chain 20947 chr16 90354753 + 54510764 54511119 THE1C 375 - 0 375 124121 140 51 64 86 15 15 17 0 9 31 2 0 13 chain 7923 chr16 90354753 + 54525970 54526467 MER44A 345 - 118 321 171505 15 12 13 52 316 0 37 42 63 23 chain 5175 chr16 90354753 + 54560102 54560231 MLT1G1-int 1178 - 167 291 193304 15 18 15 13 31 29 52 chain 29350 chr16 90354753 + 54577983 54578291 AluYa5 310 - 2 310 87296 308 chain 4089 chr16 90354753 + 54592534 54592585 MIRb 242 + 94 142 206088 42 3 0 6 chain 3852 chr16 90354753 + 54607220 54607332 MER102c 337 - 66 192 209632 26 52 66 34 chain 6028 chr16 90354753 + 54607960 54608179 MLT1B 390 + 149 371 184992 18 128 131 73 chain 67661 chr16 90354753 + 54614542 54615287 L1PA3long 6157 + 5412 6157 49382 745 chain 30136 chr16 90354753 + 54617883 54618302 MER41C 542 - 118 542 84363 85 11 11 11 1 3 230 0 1 33 7 9 41 chain 318544 chr16 90354753 + 54695282 54699156 L1P3 4156 + 6 3893 12647 219 0 15 9 29 13 57 2 1 459 0 2 1197 0 6 533 0 2 162 0 4 6 8 1 26 0 1 827 0 4 23 0 3 317 chain 106351 chr16 90354753 + 54699198 54700547 L1P2 5180 - 1785 3140 35164 135 0 3 21 0 4 442 0 4 405 2 1 6 0 4 43 10 0 118 0 2 167 chain 207083 chr16 90354753 + 54700551 54703089 L1PA7 6471 + 3925 6468 18710 36 0 1 298 0 1 107 8 4 1227 0 4 10 16 13 204 0 1 304 1 3 74 0 1 243 0 2 10 chain 5334 chr16 90354753 + 54713565 54713626 MER20 218 + 21 82 191695 61 chain 21254 chr16 90354753 + 54755418 54755767 THE1B 368 + 0 355 123006 108 5 3 55 8 7 15 46 55 112 chain 26396 chr16 90354753 + 54761987 54762393 L1PB 1623 - 97 487 98424 11 1 0 13 4 0 14 3 0 4 1 0 30 2 1 7 1 0 146 3 0 9 7 6 7 1 0 142 chain 75400 chr16 90354753 + 54801075 54802027 L1PA8 5853 - 0 948 45821 93 1 0 15 12 11 35 0 1 89 2 0 45 1 0 155 0 1 395 5 3 4 1 0 24 0 1 48 0 1 27 chain 15705 chr16 90354753 + 54816382 54816603 L1PA8 5853 - 0 217 139248 93 1 0 19 9 8 44 2 1 7 1 0 45 chain 54357 chr16 90354753 + 54816603 54817292 L1PA8 5853 + 4962 5640 56129 43 5 4 248 7 0 307 1 0 46 2 0 30 chain 7958 chr16 90354753 + 54820365 54820477 MER30 238 - 0 116 171282 79 5 7 12 0 2 16 chain 24452 chr16 90354753 + 54823876 54824166 L1PA6 6164 - 7 298 107795 205 0 1 85 chain 40854 chr16 90354753 + 54828171 54828697 MER41A 554 - 13 543 68089 56 0 1 53 0 1 171 7 8 154 3 4 82 chain 5435 chr16 90354753 + 54828862 54828982 MER58A 224 - 16 137 190659 38 40 41 42 chain 20783 chr16 90354753 + 54833378 54833608 L1PA4 6152 - 19 249 124668 230 chain 2649 chr16 90354753 + 54854921 54855009 LTR12F 595 - 311 356 231024 21 48 5 19 chain 31391 chr16 90354753 + 54861227 54861656 LOR1b 457 - 2 421 81835 312 30 21 32 1 0 54 chain 2182 chr16 90354753 + 54864253 54864320 LTR12C 1709 + 751 854 236836 16 14 51 14 6 5 17 chain 11017 chr16 90354753 + 54864353 54864571 LTR12C 1709 + 650 1068 156137 96 41 0 44 20 261 17 chain 23944 chr16 90354753 + 54866202 54866670 L1PB1 5432 - 5 435 110653 4 1 0 19 1 0 13 1 0 21 1 0 24 2 0 9 6 5 5 2 0 19 30 18 10 1 0 42 4 3 14 2 1 52 2 0 9 2 0 3 2 0 10 1 0 8 1 0 20 4 1 11 6 3 106 chain 21199 chr16 90354753 + 54868084 54868382 AluSc8 310 + 10 308 123218 121 22 26 22 3 0 99 2 1 29 chain 28541 chr16 90354753 + 54926532 54926839 AluYk11 308 + 0 307 90994 307 chain 65958 chr16 90354753 + 54932350 54933200 L1PA8 5853 - 0 846 50120 93 1 0 19 2 1 52 3 1 5 1 0 74 2 0 44 1 0 242 1 2 236 0 2 34 0 1 40 chain 24472 chr16 90354753 + 55009177 55009529 THE1D 372 - 17 372 107695 162 25 27 57 1 2 107 chain 39417 chr16 90354753 + 55061025 55061608 L1PB2 3958 + 3063 3640 70133 179 0 1 66 15 13 39 1 0 78 19 13 39 1 2 46 9 10 4 0 1 63 1 0 23 chain 3596 chr16 90354753 + 55075637 55075715 MER58A 224 + 37 117 213731 12 0 1 25 23 24 18 chain 27580 chr16 90354753 + 55106521 55106879 THE1B 368 - 0 368 94406 52 4 10 79 0 7 25 2 0 26 1 0 169 chain 33587 chr16 90354753 + 55119169 55119607 L1PA8 5853 + 5422 5853 78263 140 1 0 48 3 1 12 0 1 55 1 0 8 2 1 15 1 0 37 2 1 19 1 0 93 chain 35943 chr16 90354753 + 55131170 55131621 L1PA8 5853 - 0 444 74965 93 1 0 19 2 1 51 1 0 10 1 0 69 2 0 46 2 1 154 chain 22586 chr16 90354753 + 55171277 55171650 THE1D 372 - 3 372 117653 27 3 2 94 2 8 12 39 41 128 12 1 56 chain 4505 chr16 90354753 + 55193652 55193733 MLT1C 463 + 376 459 200724 50 15 17 16 chain 10291 chr16 90354753 + 55237444 55237573 MER85 139 - 0 139 159175 39 0 10 90 chain 29926 chr16 90354753 + 55268439 55268799 L1PA5 6144 - 0 364 85027 11 3 1 134 1 6 192 1 2 18 chain 2770 chr16 90354753 + 55294928 55295037 MER91C 135 - 20 128 229199 4 1 0 5 1 0 19 55 56 24 chain 3822 chr16 90354753 + 55343436 55343479 MIRb 242 - 102 145 210049 43 chain 103274 chr16 90354753 + 55347222 55348554 L1PA10 4194 - 89 1377 35930 29 1 0 938 22 14 168 35 0 139 chain 13010 chr16 90354753 + 55382059 55382353 L1PB1 5432 + 5114 5384 148205 20 1 0 8 3 2 13 5 2 9 2 0 52 2 1 10 5 4 60 1 0 7 1 0 11 7 0 11 34 29 17 1 0 14 chain 4491 chr16 90354753 + 55395287 55395343 MIR 256 + 93 149 200888 56 chain 2918 chr16 90354753 + 55446049 55446314 MLT1C 463 + 88 382 226723 18 0 1 7 211 239 29 chain 4100 chr16 90354753 + 55484326 55484373 Tigger2a 444 - 397 444 205953 47 chain 28733 chr16 90354753 + 55508328 55508726 LTR7 482 - 15 482 90192 75 0 1 4 1 0 95 8 7 20 9 41 109 6 44 71 chain 541118 chr16 90354753 + 55632711 55638715 L1PA3long 6157 + 0 6151 2647 152 0 1 109 0 16 498 0 128 1555 2 0 773 0 4 1676 1 0 443 1 2 794 chain 426916 chr16 90354753 + 55649363 55655023 L1PA5 6144 + 5 6137 9373 124 17 31 56 1 0 204 3 2 381 0 17 132 25 0 213 13 4 263 0 1 879 7 6 884 1 0 52 1 3 505 0 1 361 0 1 656 497 970 59 0 1 326 chain 52237 chr16 90354753 + 55658005 55658594 L1PA2 6032 - 0 598 57471 309 5 14 275 chain 45855 chr16 90354753 + 55661603 55662345 MER4D1 891 - 16 760 62175 48 0 1 120 39 49 147 24 25 22 1 0 8 2 1 9 11 12 113 0 1 67 12 0 33 18 20 68 chain 17471 chr16 90354753 + 55705397 55705635 Charlie3 2679 + 20 257 134329 13 1 0 30 6 10 163 5 1 20 chain 23104 chr16 90354753 + 55708636 55708972 L1PA16 3655 - 276 607 115121 88 10 8 78 6 5 110 2 1 14 1 0 27 chain 27410 chr16 90354753 + 55714197 55714641 MLT2A2 560 - 0 560 94938 31 0 1 5 0 2 6 10 15 87 3 112 83 51 50 168 chain 4272 chr16 90354753 + 55758166 55758302 MER58A 224 + 68 218 203601 24 70 84 42 chain 4299 chr16 90354753 + 55787214 55787267 MLT1A 405 + 226 279 203221 53 chain 4299 chr16 90354753 + 55787574 55787627 MLT1A 405 + 226 279 203220 53 chain 63593 chr16 90354753 + 55825806 55826487 L1PA2 6032 - 0 681 51190 681 chain 63593 chr16 90354753 + 55838345 55839026 L1PA2 6032 + 5351 6032 51189 681 chain 4539 chr16 90354753 + 55871983 55872130 MER58A 224 - 9 168 200350 32 79 91 36 chain 27903 chr16 90354753 + 55889743 55890148 MSTA 426 + 15 426 93355 78 10 11 16 0 1 7 0 1 4 1 0 21 0 6 76 23 21 169 chain 23372 chr16 90354753 + 55893879 55894239 THE1B 368 + 2 368 113803 33 0 5 129 1 0 9 32 36 16 1 0 12 9 8 118 chain 41869 chr16 90354753 + 55924776 55925315 LTR10F 562 + 0 562 66806 192 0 28 11 3 0 158 9 11 98 8 4 60 chain 55941 chr16 90354753 + 55925688 55926405 MER4E1 777 + 66 769 55161 87 0 1 18 0 1 369 32 16 211 chain 3909 chr16 90354753 + 55933577 55933751 MER20 218 + 23 217 208721 33 114 134 27 chain 22786 chr16 90354753 + 55942283 55942571 AluSp 311 - 24 311 116651 48 5 4 235 chain 16937 chr16 90354753 + 55969242 55969454 MLT2B4 540 - 328 540 135759 212 chain 5800 chr16 90354753 + 56006621 56006692 MSTB2-int 240 - 53 124 187150 71 chain 32324 chr16 90354753 + 56009316 56009701 L1PA7 6471 + 6071 6466 80318 227 1 11 157 chain 123857 chr16 90354753 + 56022382 56024064 SVA_A 1864 + 15 1648 29746 103 0 11 413 4 4 34 4 1 106 1 0 39 10 7 153 1 0 36 3 0 12 37 0 119 8 5 32 8 5 40 12 11 21 8 6 23 14 12 26 11 8 329 0 2 75 chain 4827 chr16 90354753 + 56037606 56037662 Tigger3b 1229 - 1121 1177 197050 56 chain 26771 chr16 90354753 + 56084063 56084471 MER1A 529 + 41 519 97083 51 39 83 186 0 27 69 16 14 42 0 1 5 chain 19899 chr16 90354753 + 56127705 56128095 AluSp 311 + 0 302 127485 96 99 16 115 13 6 16 1 5 35 2 0 13 chain 35719 chr16 90354753 + 56173188 56173637 L1PA8 5853 - 0 446 75242 93 1 0 17 1 0 47 0 2 15 2 1 68 1 0 46 1 0 157 chain 15174 chr16 90354753 + 56179161 56179381 MER30 238 + 0 234 140843 100 2 0 5 4 23 71 4 1 34 chain 557986 chr16 90354753 + 56188426 56194571 L1PA3long 6157 + 4 6157 501 148 0 1 77 0 1 1215 0 1 2444 0 1 48 0 11 1276 1 0 6 0 1 651 7 0 272 chain 35819 chr16 90354753 + 56195070 56195502 MER57A1 433 + 0 433 75109 282 0 1 150 chain 4015 chr16 90354753 + 56207208 56207256 MADE1 96 - 3 51 207143 48 chain 53768 chr16 90354753 + 56209704 56210335 L1PA6 6164 + 5529 6162 56493 304 0 1 117 8 11 127 3 1 72 chain 2986 chr16 90354753 + 56232496 56232586 MIR 256 + 108 196 225323 30 3 0 6 34 35 17 chain 31459 chr16 90354753 + 56276743 56277262 MER1A 529 + 0 529 81721 25 26 40 8 11 0 6 0 7 6 1 5 352 5 0 8 41 42 30 chain 26292 chr16 90354753 + 56413021 56413355 THE1B 368 - 21 368 98856 25 0 1 129 2 0 20 1 0 113 0 15 44 chain 27142 chr16 90354753 + 56414906 56415261 THE1B 368 - 0 368 95787 176 2 0 14 0 1 8 1 0 112 14 29 28 chain 15969 chr16 90354753 + 56416322 56416547 MER30 238 - 0 238 138459 70 0 1 54 3 6 14 0 2 61 8 15 15 chain 534961 chr16 90354753 + 56425147 56431591 L1PA5 6144 + 3 6135 3597 132 0 14 202 23 0 176 1 7 1425 0 2 233 0 4 978 1 0 42 318 0 1224 2 0 907 9 11 22 0 1 90 0 4 209 1 0 449 chain 29113 chr16 90354753 + 56428373 56428678 AluYb9 318 + 0 305 88498 305 chain 5708 chr16 90354753 + 56479115 56479206 Tigger4a 237 + 90 189 188039 17 14 22 60 chain 5019 chr16 90354753 + 56490584 56490714 Tigger3a 397 + 139 276 194942 42 61 68 27 chain 24176 chr16 90354753 + 56523437 56523727 AluSq2 311 + 11 299 109340 123 2 0 165 chain 25155 chr16 90354753 + 56565634 56565908 AluYg6 310 - 0 274 103989 274 chain 17197 chr16 90354753 + 56569449 56569814 L1PB1 5432 - 12 347 135044 15 2 1 13 1 0 20 2 1 24 24 19 13 0 1 16 14 1 17 1 0 42 1 0 16 2 1 35 0 3 12 18 12 12 1 0 11 2 1 20 1 0 11 1 0 18 chain 74277 chr16 90354753 + 56613218 56614035 L1PA3long 6157 + 5342 6157 46371 482 2 0 333 chain 5749 chr16 90354753 + 56649353 56649492 MLT2D 439 - 300 439 187644 50 53 53 36 chain 23697 chr16 90354753 + 56654780 56655061 L1PA4 6152 + 5865 6152 112047 91 0 7 16 2 1 58 0 1 107 1 0 6 chain 116122 chr16 90354753 + 56655565 56657049 THE1B-int 1605 + 54 1594 32408 371 9 33 5 0 1 55 1 0 161 1 2 196 0 7 39 0 14 61 0 1 18 1 3 162 0 7 404 chain 26759 chr16 90354753 + 56661485 56661794 AluSp 311 + 2 311 97129 309 chain 24851 chr16 90354753 + 56661814 56662118 AluY 311 + 8 308 105619 40 0 1 56 1 0 13 5 0 14 0 1 175 chain 29782 chr16 90354753 + 56708242 56708692 LTR7B 505 - 7 505 85536 44 14 13 52 0 1 26 1 0 15 0 5 23 0 1 38 29 0 28 6 68 69 0 10 105 chain 35080 chr16 90354753 + 56708727 56709164 LTR7 482 + 0 469 76076 224 12 13 27 0 31 174 chain 3526 chr16 90354753 + 56713196 56713238 MIRb 242 + 84 126 214936 42 chain 3324 chr16 90354753 + 56729813 56729893 MER52C 1267 + 941 1019 218511 20 14 0 12 14 26 20 chain 142746 chr16 90354753 + 56772869 56774916 SVA_F 1814 - 249 1804 25693 36 3 0 342 1 0 10 1 0 172 1 0 4 2 0 39 0 15 9 500 0 50 0 1 877 chain 3371 chr16 90354753 + 56773512 56773548 SVA_F 1814 - 610 646 157121 36 chain 2125 chr16 90354753 + 56773548 56773631 SVA_F 1814 - 886 969 155078 41 0 1 31 1 0 10 chain 11985 chr16 90354753 + 56773649 56773777 SVA_F 1814 - 698 826 144399 128 chain 19104 chr16 90354753 + 56773777 56773983 SVA_F 1814 - 601 806 129805 85 1 0 120 chain 20481 chr16 90354753 + 56788235 56788506 MSTA-int 1630 - 11 283 125682 132 10 11 129 chain 62737 chr16 90354753 + 56790052 56790863 L1PA8 5853 - 0 806 51567 92 2 1 19 2 1 47 2 0 12 5 4 36 0 2 31 2 0 44 1 0 245 0 1 271 chain 8829 chr16 90354753 + 56851681 56851870 Tigger3a 397 + 175 366 166499 83 68 70 38 chain 36039 chr16 90354753 + 56898334 56898797 LTR2 463 + 0 463 74849 362 12 13 15 2 1 72 chain 25254 chr16 90354753 + 56929543 56929977 MER1A 529 - 5 487 103456 53 7 14 6 6 0 189 52 79 85 21 41 15 chain 25176 chr16 90354753 + 56963368 56963708 Charlie3 2679 - 8 347 103872 50 11 5 14 4 0 207 1 10 53 chain 5871 chr16 90354753 + 56980398 56980469 U3 216 - 145 216 186460 71 chain 40160 chr16 90354753 + 57018494 57019059 LTR10A 586 + 0 565 69097 141 2 0 5 11 12 44 9 10 69 1 2 220 11 9 9 0 1 43 chain 4392 chr16 90354753 + 57032878 57033069 MLT1A0 366 - 53 244 202053 35 86 88 13 28 26 29 chain 13772 chr16 90354753 + 57036358 57036545 L1MA2 4263 - 217 403 145356 79 1 0 9 1 0 29 0 1 68 chain 14146 chr16 90354753 + 57082913 57083108 MER30 238 - 0 197 144050 45 6 0 72 8 16 64 chain 2680 chr16 90354753 + 57091790 57091851 HAL1-2a_MD 234 - 3 140 230441 6 6 0 23 4 80 14 0 6 8 chain 5633 chr16 90354753 + 57119841 57119993 L1PB1 5432 - 21 152 188739 7 1 0 13 1 0 20 2 1 19 7 5 14 8 5 19 14 5 7 4 0 16 chain 3401 chr16 90354753 + 57124835 57124942 L1MB7 1623 - 196 300 217057 4 1 0 31 16 18 9 4 2 16 12 10 14 chain 44393 chr16 90354753 + 57142986 57143838 MER41A 554 - 0 553 63697 81 0 5 36 313 0 237 0 8 93 0 1 92 chain 26107 chr16 90354753 + 57193956 57194229 AluYb8 318 + 36 309 99590 273 chain 164683 chr16 90354753 + 57233822 57235902 SVA_D 2077 - 0 2077 22705 99 0 4 573 41 13 4 1 0 171 42 1 4 1 0 104 5 1 32 0 52 47 1 40 14 2 0 47 80 0 110 3 0 33 0 3 86 0 40 200 1 0 346 1 18 18 0 3 14 chain 2856 chr16 90354753 + 57234494 57234535 SVA_D 2077 - 774 815 73452 41 chain 2925 chr16 90354753 + 57234711 57234753 SVA_D 2077 - 990 1043 73452 35 5 16 2 chain 1884 chr16 90354753 + 57235036 57235090 SVA_D 2077 - 1192 1246 152609 54 chain 29313 chr16 90354753 + 57252636 57252947 AluYa5 310 - 0 310 87499 184 1 0 126 chain 116007 chr16 90354753 + 57252973 57254577 L1MA3 4352 - 513 2126 32455 440 14 14 130 1 2 49 0 1 19 0 3 119 7 7 80 1 0 60 0 4 120 28 26 42 1 0 131 0 9 71 4 0 199 1 0 87 chain 7899 chr16 90354753 + 57333862 57333945 tRNA-Leu-CTG 83 + 0 83 171659 83 chain 7899 chr16 90354753 + 57334391 57334474 tRNA-Leu-CTG 83 - 0 83 171660 83 chain 7093 chr16 90354753 + 57353028 57353112 L1PA8 5853 - 431 515 176809 84 chain 29960 chr16 90354753 + 57353112 57353514 L1PA8 5853 + 5457 5853 84934 107 1 0 46 2 0 61 9 8 61 2 1 19 2 1 92 chain 17465 chr16 90354753 + 57376969 57377204 MER30 238 - 0 237 134343 48 3 0 72 7 12 105 chain 8024 chr16 90354753 + 57390819 57390920 MLT1D 503 - 401 503 170912 72 0 1 29 chain 24289 chr16 90354753 + 57412966 57413251 AluSp 311 + 10 295 108708 285 chain 42299 chr16 90354753 + 57428713 57429378 LTR12F 595 - 0 595 66266 207 18 17 8 0 1 38 1 0 109 39 5 16 42 0 9 0 8 32 2 0 41 0 1 103 chain 187951 chr16 90354753 + 57430866 57433051 HERV9-int 5642 - 198 2412 20243 214 1 0 178 0 21 414 2 1 727 0 7 424 0 1 154 1 3 70 chain 25491 chr16 90354753 + 57439671 57439968 AluYk4 311 + 8 296 102270 118 9 0 170 chain 7371 chr16 90354753 + 57454778 57454866 L1MA4A 3247 + 3042 3129 174973 65 1 0 22 chain 27337 chr16 90354753 + 57457839 57458155 AluYb8 318 + 0 312 95152 26 1 0 37 2 0 60 1 0 189 chain 19002 chr16 90354753 + 57461336 57461685 THE1C 375 + 0 352 130107 15 2 0 55 12 16 56 7 11 30 1 2 9 47 43 115 chain 84875 chr16 90354753 + 57473473 57474508 MER11B 1079 + 7 1051 41563 530 0 1 4 6 5 22 0 1 200 2 4 32 0 5 68 0 1 171 chain 31547 chr16 90354753 + 57522984 57523499 MER1A 529 - 0 529 81573 13 0 1 13 55 61 242 4 5 99 10 15 17 7 7 15 5 6 35 chain 20892 chr16 90354753 + 57607375 57607999 MER51B 395 - 78 395 124312 72 1 0 123 7 11 46 309 0 30 3 2 33 chain 3241 chr16 90354753 + 57622128 57622165 Tigger4a 237 - 186 223 220215 37 chain 4014 chr16 90354753 + 57646129 57646178 MER63D 473 + 358 407 207182 49 chain 28309 chr16 90354753 + 57684621 57684919 AluYa5 310 - 12 310 91906 298 chain 45346 chr16 90354753 + 57734232 57735137 LTR71B 605 - 0 577 62661 36 323 0 417 11 0 8 7 13 103 chain 4760 chr16 90354753 + 57747503 57747562 THE1B 368 + 280 338 197810 28 1 0 30 chain 6929 chr16 90354753 + 57766549 57766636 MER20 218 + 91 178 177968 87 chain 20263 chr16 90354753 + 57779256 57779491 AluSp 311 + 63 298 126335 235 chain 2729 chr16 90354753 + 57795186 57795232 MIRb 242 - 119 165 229742 27 7 7 12 chain 7756 chr16 90354753 + 57811177 57811345 L1MB3 1562 + 8 204 172562 12 2 1 68 46 75 40 chain 17988 chr16 90354753 + 57813769 57814064 THE1D 372 - 63 365 132892 70 28 29 23 4 0 17 5 10 28 0 4 26 1 2 93 chain 26332 chr16 90354753 + 57845958 57846253 AluYf4 310 - 15 310 98687 295 chain 9654 chr16 90354753 + 57864439 57864546 U6 107 - 0 107 162327 107 chain 38024 chr16 90354753 + 57891301 57892101 L1PA7 6471 - 1 454 72089 12 1 0 359 346 0 82 chain 7191 chr16 90354753 + 57925325 57925408 AluJr 308 + 201 284 176135 83 chain 9339 chr16 90354753 + 58014920 58015390 MER49 923 - 612 734 163857 73 348 0 49 chain 53971 chr16 90354753 + 58038967 58039647 LTR13 1007 - 322 1007 56385 56 2 1 36 2 8 186 0 1 228 0 1 85 0 3 6 6 1 73 chain 7008 chr16 90354753 + 58052017 58052111 MLT1A 405 - 16 110 177413 57 1 0 16 1 2 19 chain 7827 chr16 90354753 + 58108800 58108924 MLT1D-int 1367 + 16 140 172147 24 10 11 54 1 0 35 chain 128421 chr16 90354753 + 58123347 58124826 L1PA5 6144 + 4664 6144 28471 629 2 1 517 0 1 177 8 9 146 chain 17176 chr16 90354753 + 58134488 58134734 AluJr 308 + 48 290 135094 80 20 18 138 2 0 6 chain 21691 chr16 90354753 + 58178066 58178429 THE1B 368 - 0 368 121428 49 14 13 63 60 66 177 chain 8450 chr16 90354753 + 58242410 58242516 MER1B 344 + 216 339 168566 58 0 17 48 chain 17852 chr16 90354753 + 58252765 58253148 MSTA 426 - 9 426 133234 32 5 6 34 61 69 12 31 29 12 1 0 35 0 1 35 17 44 108 chain 4681 chr16 90354753 + 58254425 58254496 HAL1 992 + 509 581 198744 34 6 7 31 chain 6558 chr16 90354753 + 58275224 58275380 L1MB8 1703 - 778 925 180791 6 4 0 22 4 1 10 22 20 20 1 3 60 2 0 5 chain 3928 chr16 90354753 + 58285628 58285674 MADE1 96 - 50 96 208447 46 chain 15513 chr16 90354753 + 58289005 58289433 MLT2B3 573 - 160 573 139847 48 207 194 38 7 5 128 chain 29046 chr16 90354753 + 58290914 58291220 AluYa5 310 - 4 310 88779 306 chain 139321 chr16 90354753 + 58337692 58339918 L1PB1 5432 - 35 2094 26244 4 1 0 23 1 0 24 25 20 18 17 12 15 1 0 43 2 1 16 2 1 52 2 0 9 168 57 17 0 17 67 1 0 4 1 2 110 2 7 66 24 24 32 1 0 135 3 0 108 31 11 70 0 1 699 2 0 6 11 7 96 0 1 124 52 18 114 0 1 27 chain 30834 chr16 90354753 + 58341498 58341897 MER4B 649 + 0 420 82801 47 0 15 77 8 10 137 0 3 24 4 5 102 chain 45831 chr16 90354753 + 58346093 58346646 MER41A 554 - 0 554 62195 126 0 1 427 chain 26494 chr16 90354753 + 58350272 58350634 MER4B 649 + 0 353 98069 112 1 0 4 0 1 8 15 7 104 0 4 48 5 0 65 chain 4063 chr16 90354753 + 58354034 58354082 MIRc 230 - 91 139 206431 48 chain 14850 chr16 90354753 + 58372561 58372831 L1PB1 5432 - 10 250 141779 18 1 0 13 1 0 21 1 0 22 2 0 17 1 0 4 2 0 18 9 0 13 10 0 15 1 0 43 8 7 10 2 1 38 chain 50314 chr16 90354753 + 58386719 58387357 MER11B 1079 - 424 1079 58780 116 4 3 202 1 18 270 1 2 44 chain 119797 chr16 90354753 + 58391912 58393565 L1PB2 3958 - 120 1737 31122 63 7 13 13 2 0 34 1 0 4 0 1 29 1 0 64 1 0 49 0 2 12 0 1 4 7 5 93 2 0 12 2 0 65 5 0 11 1 0 27 68 30 97 5 6 279 1 0 66 0 7 140 0 1 225 1 2 262 chain 170718 chr16 90354753 + 58429241 58431756 SVA_D 2077 - 7 2077 21965 84 1 0 179 1 0 406 4 0 6 77 2 4 0 1 335 125 0 9 0 1 64 1 0 32 11 0 29 354 0 153 0 40 91 0 40 78 0 39 457 0 6 14 chain 5812 chr16 90354753 + 58429922 58429999 SVA_D 2077 - 784 861 79353 77 chain 3648 chr16 90354753 + 58430338 58430463 SVA_D 2077 - 770 896 141682 51 26 27 48 chain 766 chr16 90354753 + 58430609 58430634 SVA_D 2077 - 669 694 109833 25 chain 11563 chr16 90354753 + 58430634 58430963 SVA_D 2077 - 821 1023 87508 149 127 0 53 chain 2933 chr16 90354753 + 58430809 58430841 SVA_D 2077 - 1096 1128 226465 32 chain 43846 chr16 90354753 + 58434988 58435601 LTR12_ 688 - 0 684 64389 35 9 0 126 0 103 95 13 12 46 23 24 55 23 0 188 chain 15025 chr16 90354753 + 58450508 58450683 L1PA5 6144 - 0 175 141253 175 chain 26067 chr16 90354753 + 58455050 58455407 THE1C 375 + 16 375 99768 52 0 14 9 14 0 60 1 2 32 1 2 188 chain 28200 chr16 90354753 + 58466887 58467297 MLT2A1 477 - 101 476 92311 180 40 8 19 5 2 166 chain 46789 chr16 90354753 + 58475615 58476180 LTR19B 566 + 0 566 61381 513 0 1 52 chain 24025 chr16 90354753 + 58627181 58627487 AluSp 311 + 0 299 110187 245 5 1 38 3 0 15 chain 4160 chr16 90354753 + 58633472 58633521 HY3 101 + 0 49 205089 49 chain 24083 chr16 90354753 + 58638403 58638730 AluSp 311 + 0 292 109847 120 16 0 161 19 0 11 chain 25062 chr16 90354753 + 58642476 58642993 L1PB1 5432 + 4921 5391 104499 37 1 0 28 0 3 5 6 3 17 1 5 31 1 2 51 1 2 10 6 1 22 1 0 9 1 0 10 5 1 11 5 3 48 2 1 15 1 0 41 51 20 30 2 0 5 1 0 14 2 0 26 1 0 19 chain 26556 chr16 90354753 + 58647717 58648020 AluY 311 + 7 307 97818 126 3 0 174 chain 23987 chr16 90354753 + 58650022 58650309 AluSg7 307 - 21 307 110402 159 2 3 60 2 0 64 chain 11849 chr16 90354753 + 58665571 58665808 L1MB2 1706 - 12 238 152828 83 1 0 13 73 63 67 chain 20723 chr16 90354753 + 58669983 58670299 L1PA8 5853 + 5506 5815 124883 14 3 2 42 1 0 38 8 6 70 2 1 9 1 0 6 0 1 45 2 1 19 2 1 54 chain 24184 chr16 90354753 + 58680295 58680587 AluSc5 308 - 9 298 109304 6 3 0 283 chain 23039 chr16 90354753 + 58734976 58735642 THE1D 372 + 0 360 115455 72 0 10 84 25 27 62 1 0 17 1 2 53 318 0 33 chain 26344 chr16 90354753 + 58740173 58740473 AluSp 311 - 3 301 98639 8 2 0 290 chain 21710 chr16 90354753 + 58744638 58744897 AluY 311 + 49 308 121348 259 chain 23320 chr16 90354753 + 58746731 58747031 AluSp 311 + 0 307 114093 50 7 17 226 3 0 14 chain 21456 chr16 90354753 + 58748182 58748472 AluYa5 310 + 10 298 122309 43 50 48 197 chain 4027 chr16 90354753 + 58762513 58762568 HY5 76 - 7 63 206962 31 1 2 23 chain 5871 chr16 90354753 + 58766283 58766354 HY3 101 - 30 101 186461 71 chain 23794 chr16 90354753 + 58769435 58769730 AluY 311 + 0 301 111505 96 4 14 13 2 0 10 3 1 167 chain 50369 chr16 90354753 + 58770029 58770620 LTR10C 591 + 0 591 58738 591 chain 16460 chr16 90354753 + 58783239 58783802 LTR12C 1709 + 781 1453 137040 56 1 0 79 0 1 69 321 429 25 1 2 11 chain 20664 chr16 90354753 + 58793897 58794206 THE1D 372 - 43 368 125091 132 15 17 46 1 5 28 0 1 10 8 18 11 1 0 57 chain 17165 chr16 90354753 + 58794206 58794433 L1PB4 2604 - 998 1220 135125 127 5 0 95 chain 36826 chr16 90354753 + 58798394 58798803 L1PA5 6144 - 0 409 73770 409 chain 532641 chr16 90354753 + 58813791 58819900 L1PA5 6144 - 0 6141 3893 144 0 12 6 5 0 241 0 1 1138 1 2 10 1 0 283 0 1 623 2 1 482 2 3 762 0 4 236 0 2 352 0 4 346 1 0 255 2 1 504 0 1 236 2 16 475 chain 101847 chr16 90354753 + 58823975 58825254 LTR12C 1709 - 0 1709 36301 84 5 4 219 1 0 174 0 4 31 0 444 452 0 1 9 6 1 10 12 0 11 0 9 7 3 0 4 6 0 245 chain 27789 chr16 90354753 + 58840353 58840716 THE1B 368 - 4 368 93736 14 3 0 181 1 0 127 0 5 37 chain 17646 chr16 90354753 + 58841977 58842166 L1PA2 6032 - 4 193 133848 189 chain 131571 chr16 90354753 + 58856447 58858032 L1PA7 6471 - 3 1588 27726 14 0 2 128 20 19 688 0 3 597 1 0 5 1 2 87 4 0 40 chain 4770 chr16 90354753 + 58863807 58863903 MER44A 345 + 144 264 197699 33 0 1 7 1 20 10 11 16 16 1 0 17 chain 46133 chr16 90354753 + 58873108 58873599 L1HS 6032 + 5541 6032 61910 491 chain 121283 chr16 90354753 + 58874574 58875947 L1PA4 6152 - 9 1379 30609 322 2 0 726 1 0 322 chain 8700 chr16 90354753 + 58876115 58876285 L1MB2 1706 - 12 181 167190 59 14 16 8 1 0 13 1 0 16 16 15 42 chain 137158 chr16 90354753 + 58879423 58880991 SVA_D 2077 - 0 2059 26608 136 0 20 484 0 403 66 0 39 15 2 0 6 1 0 373 0 39 287 1 0 149 9 3 39 chain 529911 chr16 90354753 + 58907054 58913170 L1PA5 6144 - 9 6144 4198 647 0 3 175 1 3 20 1 0 11 1 5 183 0 1 181 0 8 270 1 0 280 0 4 1094 0 1 79 1 0 480 0 3 1517 9 0 248 0 4 50 0 1 867 chain 10972 chr16 90354753 + 58913175 58913321 L1PA16 3655 - 722 871 156311 11 1 0 12 0 4 122 chain 36809 chr16 90354753 + 58930390 58930822 L1PA6 6164 + 5718 6150 73788 432 chain 29099 chr16 90354753 + 58944464 58944899 MER83 447 - 14 447 88556 21 16 13 17 0 4 43 16 17 151 6 5 100 0 3 6 6 0 53 chain 521449 chr16 90354753 + 58948281 58955004 L1PA7 6471 - 3 6471 5013 7 4 0 324 1 0 213 1 0 630 31 11 475 0 3 125 1 13 308 1 13 336 0 2 172 1 0 96 1 0 120 0 1 133 3 2 113 6 1 477 0 4 177 0 3 63 5 6 119 5 7 17 311 13 134 3 1 22 1 0 163 0 4 529 1 0 242 1 0 38 0 1 6 1 0 38 0 1 86 0 4 141 3 4 116 0 1 94 11 12 61 0 4 75 0 11 22 0 13 253 1 2 183 1 2 221 chain 25238 chr16 90354753 + 58960446 58960816 THE1B 368 + 0 368 103550 81 4 5 83 1 0 29 0 3 5 5 9 15 1 0 10 1 0 52 12 5 71 chain 21444 chr16 90354753 + 58966921 58967286 THE1B 368 - 0 360 122352 119 8 7 12 1 0 12 5 9 9 1 0 7 25 18 58 14 15 94 chain 7155 chr16 90354753 + 58970980 58971120 MER2 342 + 136 295 176368 10 1 0 70 22 43 19 5 4 13 chain 17502 chr16 90354753 + 58995749 58995987 L1PA16 3655 - 66 301 134260 12 9 6 217 chain 12136 chr16 90354753 + 58998003 58998134 L1PA7 6471 - 310 441 151669 131 chain 24799 chr16 90354753 + 58998134 58998430 L1PA7 6471 + 6157 6453 105898 150 2 0 5 0 2 139 chain 72613 chr16 90354753 + 58998473 58999295 L1PA5 6144 + 5318 6140 47209 822 chain 3940 chr16 90354753 + 59005319 59005368 LTR47A 437 - 93 142 208278 49 chain 536612 chr16 90354753 + 59011416 59017434 L1PA3long 6157 - 0 6157 3362 1521 0 1 277 0 4 574 0 1 481 0 1 304 0 1 1552 1 0 191 0 1 342 1 129 281 0 2 342 0 1 151 chain 151028 chr16 90354753 + 59025375 59027260 L1P2 5180 - 3270 5163 24472 433 0 4 97 13 14 568 2 1 6 1 0 272 1 0 8 1 0 260 1 0 96 2 1 19 7 16 98 chain 32844 chr16 90354753 + 59027307 59027679 L1PA4 6152 - 6 378 79468 372 chain 49145 chr16 90354753 + 59027717 59028247 L1HS 6032 - 1 531 59637 530 chain 36063 chr16 90354753 + 59029149 59029761 L1PB1 5432 + 4792 5398 74812 92 0 4 215 1 2 9 1 0 24 1 0 6 1 0 12 8 4 8 2 0 52 2 1 15 1 0 22 69 74 14 2 0 24 1 0 8 1 0 14 1 0 6 chain 5812 chr16 90354753 + 59029783 59029852 L1MA8 2339 + 2015 2084 187021 69 chain 106316 chr16 90354753 + 59035392 59036597 L1PA4 6152 - 0 1210 35177 254 1 0 572 1 2 16 0 4 69 0 1 292 chain 23404 chr16 90354753 + 59043704 59044081 THE1C 375 - 0 375 113625 25 1 0 46 15 18 77 31 32 52 3 0 14 6 4 107 chain 9389 chr16 90354753 + 59050785 59050894 MER85 139 + 0 119 163613 89 0 10 20 chain 92098 chr16 90354753 + 59071378 59072420 L1PA4 6152 - 9 1055 38940 153 1 7 85 2 0 801 chain 33487 chr16 90354753 + 59102385 59102943 L1PA16 3655 - 84 645 78429 84 70 71 128 2 0 49 31 35 194 chain 541428 chr16 90354753 + 59106162 59112294 L1PA4 6152 + 2 6139 2598 567 1 0 377 0 4 609 0 2 798 0 1 811 1 0 2968 chain 535026 chr16 90354753 + 59130323 59136435 L1PA4 6152 + 0 6141 3590 484 1 2 363 1 4 6 3 0 14 0 2 465 0 1 81 0 3 422 0 5 1283 0 5 110 0 4 415 0 1 270 0 1 403 0 4 884 4 1 71 0 4 166 0 1 423 1 0 140 0 1 102 chain 27809 chr16 90354753 + 59158708 59159012 AluYa5 310 - 6 310 93668 304 chain 9571 chr16 90354753 + 59179363 59179495 L1PA8 5853 - 0 137 162731 62 0 7 24 1 0 19 2 1 24 chain 7194 chr16 90354753 + 59186122 59186203 MER50 708 + 2 83 176116 81 chain 4222 chr16 90354753 + 59191272 59191456 L1MA8 2339 - 15 167 204265 25 58 35 7 1 0 25 22 20 12 10 4 24 chain 11706 chr16 90354753 + 59212583 59212739 MER30 238 - 0 201 153438 27 0 27 54 4 22 71 chain 33862 chr16 90354753 + 59249566 59250122 L1PB3 3668 - 55 582 77838 14 23 19 11 7 3 36 3 2 24 45 27 86 1 0 14 1 0 87 4 3 68 1 0 4 0 1 91 0 1 36 chain 22838 chr16 90354753 + 59250858 59251231 L1PA16 3655 + 3236 3578 116406 42 1 0 12 2 0 62 4 0 12 55 30 62 0 1 121 chain 384872 chr16 90354753 + 59263579 59268128 L1PA5 6144 + 4 6144 10611 131 10 24 308 0 1 698 12 3 884 0 2 280 0 11 818 1 0 6 2 0 38 1 14 167 0 1554 32 0 1 509 0 3 24 0 1 476 1 2 139 1 3 11 chain 20752 chr16 90354753 + 59285402 59285645 L1PA7 6471 - 5 247 124783 212 1 0 30 chain 116795 chr16 90354753 + 59311943 59313229 L1PA4 6152 - 1 1291 32191 79 1 0 415 0 1 348 0 4 443 chain 7549 chr16 90354753 + 59320101 59320209 L1MA4A 3247 + 3022 3128 173878 16 1 0 67 2 1 22 chain 28750 chr16 90354753 + 59323732 59324037 AluYa5 310 - 5 310 90121 305 chain 33614 chr16 90354753 + 59327327 59327773 L1PA8 5853 - 0 440 78222 93 1 0 19 2 1 51 1 0 7 6 5 67 2 0 48 1 0 14 0 1 134 chain 26393 chr16 90354753 + 59346494 59346874 L1PA8 5853 - 0 374 98440 67 0 1 25 1 0 19 6 5 40 1 0 14 6 5 69 2 0 24 2 1 11 0 3 6 4 0 79 0 1 4 chain 29158 chr16 90354753 + 59350697 59351272 L1PB1 5432 + 4942 5392 88264 161 101 4 7 1 0 24 1 0 9 1 0 10 6 2 9 2 0 52 0 2 14 1 0 44 1 0 16 3 0 6 16 6 19 2 0 5 21 18 20 1 0 22 chain 55304 chr16 90354753 + 59360930 59361813 L1MA1 4479 - 328 1195 55516 9 1 0 35 24 22 7 1 0 92 44 45 79 7 6 11 24 21 69 1 0 16 2 0 24 1 0 195 3 0 130 4 0 57 1 8 9 5 0 32 chain 11426 chr16 90354753 + 59364624 59364903 THE1B 368 - 76 368 154584 49 40 45 23 7 6 50 2 0 5 3 6 17 43 50 5 0 1 35 chain 7023 chr16 90354753 + 59365700 59365816 LOR1b 457 + 42 174 177300 17 17 35 49 2 0 31 chain 14750 chr16 90354753 + 59367160 59367350 MER50 708 - 23 214 142106 96 0 1 94 chain 54158 chr16 90354753 + 59367356 59368133 LTR12_ 688 - 0 688 56255 13 0 10 316 100 0 206 0 1 142 chain 13019 chr16 90354753 + 59388862 59389074 MSTC 436 + 212 429 148180 6 6 0 21 23 34 156 chain 21670 chr16 90354753 + 59395649 59396015 THE1B 368 + 0 368 121498 113 7 6 43 66 74 6 4 0 66 1 0 60 chain 231293 chr16 90354753 + 59397113 59399793 L1P1 4361 + 2 2674 17241 572 10 9 119 12 5 1967 chain 44440 chr16 90354753 + 59423025 59423717 MER50B 698 - 32 698 63646 124 0 1 52 26 25 36 11 0 3 10 0 178 24 18 14 9 4 44 1 2 113 0 1 31 0 4 16 chain 59323 chr16 90354753 + 59441771 59442441 L1PA4 6152 - 13 685 53210 114 0 1 212 0 1 344 chain 181034 chr16 90354753 + 59442443 59444470 L1PA4 6152 + 3432 5461 20895 346 0 1 850 1 2 830 chain 107428 chr16 90354753 + 59454924 59456607 L1PB2 3958 - 162 1836 34857 21 1 0 20 4 2 71 11 10 55 1 0 72 1 0 60 12 12 21 4 0 7 1 10 61 5 0 13 1 0 54 2 0 8 11 9 28 1 4 93 2 1 15 7 9 21 0 1 167 2 0 27 1 0 389 21 16 21 16 15 101 11 10 33 53 60 132 0 1 4 1 0 20 chain 44818 chr16 90354753 + 59476864 59477371 L1PA5 6144 - 9 517 63270 238 0 1 269 chain 80422 chr16 90354753 + 59477371 59478269 L1PA5 6144 + 4722 5618 43420 147 1 0 425 2 0 88 0 1 235 chain 32447 chr16 90354753 + 59490676 59491277 L1PB1 5432 - 10 577 80116 12 7 6 13 2 1 11 28 26 7 2 0 14 1 0 5 3 1 18 24 12 16 1 0 44 1 0 15 2 1 52 16 10 12 1 0 12 1 0 19 5 0 6 3 6 248 chain 25052 chr16 90354753 + 59502269 59502567 AluYc3 301 - 0 301 104535 48 4 5 108 0 1 24 1 2 113 chain 46553 chr16 90354753 + 59537105 59537654 L1PA7 6471 - 12 562 61554 126 0 1 4 1 0 189 5 6 224 chain 36941 chr16 90354753 + 59545535 59545940 L1PA2 6032 - 842 1247 73345 405 chain 77226 chr16 90354753 + 59545940 59546776 L1PA2 6032 + 5190 6026 44856 836 chain 36698 chr16 90354753 + 59548814 59549315 LTR7 482 - 0 482 73962 49 12 14 69 1 0 89 0 31 52 51 0 178 chain 241914 chr16 90354753 + 59553235 59556430 HERVH-int 3825 - 0 3825 16673 225 0 2 260 8 218 39 26 28 605 20 18 12 15 16 105 0 2 193 20 30 356 4 31 210 1 0 29 23 14 206 15 0 34 0 5 244 0 1 30 0 1 132 1 0 49 2 1 5 0 1 11 1 21 35 22 0 18 33 7 13 1 0 14 45 471 133 chain 34575 chr16 90354753 + 59556432 59556868 LTR7 482 - 0 482 76787 49 12 14 68 1 0 90 9 50 89 0 4 118 chain 20452 chr16 90354753 + 59577257 59577526 AluSp 311 + 0 271 125749 53 13 15 203 chain 552857 chr16 90354753 + 59593191 59599223 L1PA2 6032 - 1 6032 1084 6 5 0 1776 0 1 1107 0 4 197 0 1 2027 1 0 359 1 0 297 1 0 183 0 1 72 chain 17109 chr16 90354753 + 59653681 59653896 L1PA5 6144 - 0 214 135283 159 15 14 41 chain 84093 chr16 90354753 + 59655850 59656893 MER11B 1079 - 20 1054 41857 153 0 1 133 6 0 177 36 35 295 4 1 239 chain 74336 chr16 90354753 + 59657901 59658948 HERVK11-int 2540 - 305 1327 46343 124 5 6 5 3 0 70 6 5 190 1 0 104 17 12 121 8 21 227 4 7 48 1 0 5 26 6 30 12 1 8 0 1 16 1 0 15 chain 22510 chr16 90354753 + 59659276 59659536 MER11B 1079 - 554 814 117987 260 chain 24018 chr16 90354753 + 59659540 59659804 MER11B 1079 - 815 1079 110229 264 chain 166927 chr16 90354753 + 59682714 59684730 L1PA7 6471 - 1 2052 22406 9 2 0 28 0 9 242 11 36 9 0 1 515 1 0 636 0 1 308 0 2 255 chain 17599 chr16 90354753 + 59689829 59690023 L1PA4 6152 + 5957 6151 134000 194 chain 26498 chr16 90354753 + 59695048 59695413 THE1C 375 - 0 367 98049 24 2 1 255 7 8 22 0 2 55 chain 32202 chr16 90354753 + 59708820 59709173 L1PA4 6152 - 1 354 80520 353 chain 114656 chr16 90354753 + 59714358 59715650 L1PA3long 6157 - 0 1295 32899 11 1 4 810 1 2 30 2 1 437 chain 16389 chr16 90354753 + 59719233 59719591 MSTA 426 - 18 423 137239 61 31 51 60 3 0 10 18 22 56 66 92 53 chain 211363 chr16 90354753 + 59757166 59759546 L1PA3long 6157 - 0 2376 18411 779 1 0 536 7 2 292 0 1 46 1 0 143 0 4 9 0 2 364 5 1 197 chain 7872 chr16 90354753 + 59765258 59765347 5S 121 + 0 90 171857 29 0 1 60 chain 19942 chr16 90354753 + 59768355 59768635 THE1D 372 + 75 372 127324 53 0 4 30 22 35 175 chain 3367 chr16 90354753 + 59794898 59794946 MER41B 635 - 57 104 217730 11 2 1 35 chain 339457 chr16 90354753 + 59794955 59799212 L1PA7 6471 + 2166 6467 11913 354 0 2 9 0 1 109 20 0 134 0 5 747 4 0 17 0 4 193 0 20 165 1 2 80 30 14 16 0 6 234 2 1 166 1 5 137 1 2 31 2 1 47 0 6 549 3 0 120 0 12 266 5 8 495 7 8 25 0 25 279 2 0 6 chain 4963 chr16 90354753 + 59813570 59813645 LTR47A 437 + 311 385 195565 21 6 5 48 chain 76321 chr16 90354753 + 59833382 59834550 L1PB 1623 + 424 1583 45303 61 1 0 94 10 12 119 19 41 105 5 14 72 16 16 351 6 0 137 1 0 7 2 1 30 8 4 13 6 2 12 1 0 6 54 32 22 2 0 8 chain 512622 chr16 90354753 + 59843243 59849393 L1PA6 6164 + 18 6151 5909 449 1 0 340 3 15 64 1 16 121 2 1 48 1 0 182 1 0 169 10 5 7 0 5 370 0 2 418 3 4 95 8 0 129 1 0 203 0 9 519 0 1 74 0 3 187 0 1 118 1 0 4 0 1 1233 60 0 268 0 1 87 0 5 146 0 4 121 0 1 420 0 1 286 chain 30983 chr16 90354753 + 59862787 59863133 L1PA5 6144 + 5782 6128 82545 346 chain 533471 chr16 90354753 + 59864617 59870753 L1PA4 6152 - 12 6152 3776 1221 0 6 968 2 1 255 1 0 61 20 0 451 1 0 1071 1 0 1377 0 26 167 4 0 536 chain 13552 chr16 90354753 + 59883579 59883788 L1PA8 5853 - 0 204 146157 92 2 1 19 2 1 41 8 6 11 1 0 33 chain 18981 chr16 90354753 + 59885156 59885417 L1PA8 5853 - 7 260 130156 86 1 0 19 2 1 49 2 1 8 1 0 71 8 4 14 chain 9692 chr16 90354753 + 59889792 59890448 LTR49 580 + 0 580 162131 49 33 60 25 0 1 4 465 361 80 chain 108500 chr16 90354753 + 59904170 59905379 L1PA5 6144 - 20 1231 34561 134 0 1 671 0 1 404 chain 24193 chr16 90354753 + 59906614 59906873 L1PA3long 6157 - 0 259 109261 259 chain 33170 chr16 90354753 + 59924409 59924944 MLT2A2 560 + 0 560 78950 74 1 0 129 2 1 17 33 0 13 17 63 60 1 2 43 1 12 19 17 19 108 chain 22521 chr16 90354753 + 59927148 59927417 AluSp 311 - 34 303 117926 269 chain 25687 chr16 90354753 + 59933359 59933655 L1PA4 6152 - 184 479 101345 183 1 0 112 chain 12522 chr16 90354753 + 59933655 59933800 L1PA4 6152 + 5998 6143 150150 145 chain 21786 chr16 90354753 + 59936302 59936538 L1PA5 6144 + 5898 6134 121078 236 chain 10282 chr16 90354753 + 59976612 59976727 AluY 311 + 9 124 159221 115 chain 99560 chr16 90354753 + 59991363 59992517 L1PA6 6164 - 8 1170 36892 833 0 4 19 0 4 302 chain 46269 chr16 90354753 + 59999370 59999956 LTR10C 591 - 0 591 61797 57 6 11 11 0 2 343 3 1 166 chain 22392 chr16 90354753 + 60006017 60006291 AluY 311 + 10 284 118524 274 chain 23920 chr16 90354753 + 60008645 60008940 AluY 311 + 10 302 110808 122 0 1 144 3 1 19 2 0 5 chain 548081 chr16 90354753 + 60010505 60016523 L1PA2 6032 + 0 6026 1699 1275 1 10 4491 1 0 90 5 0 7 0 5 148 chain 148567 chr16 90354753 + 60025975 60027962 L1PBa1 4058 - 2065 4048 24809 331 2 1 141 0 33 368 19 16 348 10 9 86 3 0 29 9 8 191 3 1 257 28 6 113 1 0 6 5 3 10 1 0 26 chain 15373 chr16 90354753 + 60084273 60084446 L1PA7 6471 - 166 340 140282 52 0 1 121 chain 108607 chr16 90354753 + 60109354 60110682 L1PA6 6164 - 3 1291 34537 7 2 0 150 1 2 419 0 1 257 0 6 18 0 4 371 50 0 53 chain 40675 chr16 90354753 + 60112438 60112889 LTR7 482 + 0 482 68329 264 0 31 187 chain 297144 chr16 90354753 + 60112891 60116772 HERVH-int 3825 + 0 3825 13573 527 53 0 4 135 0 39 2 1 9 1 0 9 1 0 14 7 1 14 1 0 13 3 0 14 81 15 60 21 0 9 2 1 49 1 0 36 0 1 413 16 1 211 0 1 239 8 35 290 0 4 65 0 1 1044 12 222 250 3 8 225 chain 40889 chr16 90354753 + 60118031 60118482 LTR7 482 + 0 482 68038 267 0 31 184 chain 72418 chr16 90354753 + 60118826 60121149 THE1B-int 1605 - 7 1605 47296 69 1 0 122 0 8 99 0 1 224 1388 655 420 chain 31327 chr16 90354753 + 60119350 60119783 LTR7 482 - 0 482 81943 186 0 31 42 1 12 45 25 32 134 chain 22223 chr16 90354753 + 60120419 60120695 AluY 311 + 10 285 119246 123 12 11 141 chain 15711 chr16 90354753 + 60121149 60121368 THE1B 368 - 0 215 139233 74 1 0 102 2 0 18 6 5 16 chain 46522 chr16 90354753 + 60154517 60155291 LTR1 825 + 15 825 61576 206 44 0 15 7 51 8 0 4 7 1 7 14 71 95 7 0 1 104 1 0 39 0 1 17 3 1 70 0 3 17 2 3 39 3 1 6 0 1 93 chain 42270 chr16 90354753 + 60160283 60160848 L1PA8 5853 - 19 583 66306 73 2 1 18 3 2 51 1 0 10 2 1 68 2 0 46 1 0 26 5 11 257 chain 156941 chr16 90354753 + 60181589 60183580 L1PA7 6471 + 4457 6457 23732 30 0 1 336 2 1 38 0 3 392 4 0 239 28 16 108 3 0 79 2 3 87 10 8 42 0 1 53 0 11 380 9 25 11 2 0 136 chain 4889 chr16 90354753 + 60183685 60183746 Tigger2 2703 + 2557 2618 196386 61 chain 23685 chr16 90354753 + 60193355 60193653 AluSp 311 + 10 311 112119 70 2 0 9 0 8 35 3 0 179 chain 28794 chr16 90354753 + 60197991 60198328 L1PA5 6144 + 5810 6143 89924 277 4 0 56 chain 25684 chr16 90354753 + 60208514 60208918 MSTA 426 + 0 408 101357 28 0 1 102 1 0 71 1 2 4 4 0 30 27 26 30 15 23 91 chain 4082 chr16 90354753 + 60213023 60213133 MLT1F 544 + 307 418 206169 31 33 0 8 13 47 25 chain 2906 chr16 90354753 + 60227258 60227291 LTR48 738 + 353 386 226939 33 chain 3330 chr16 90354753 + 60228940 60229258 LTR2 463 - 0 314 75923 309 4 0 5 chain 262587 chr16 90354753 + 60229310 60232152 L1PA2 6032 - 8 2850 15559 2842 chain 1560 chr16 90354753 + 60232152 60232301 LTR2 463 - 314 463 75923 149 chain 25782 chr16 90354753 + 60234633 60235026 LTR7 482 + 0 475 100950 101 0 50 7 9 9 49 13 45 16 20 19 9 1 2 168 chain 43828 chr16 90354753 + 60236602 60237155 MER41A 554 + 0 554 64411 198 1 0 4 0 1 259 21 22 70 chain 4575 chr16 90354753 + 60243569 60243655 LTR48B 642 + 529 612 199946 14 6 4 39 5 4 22 chain 36144 chr16 90354753 + 60251510 60252114 LTR9B 643 - 18 643 74716 14 58 57 18 5 19 53 3 4 21 9 10 90 2 3 108 24 28 39 0 1 160 chain 70663 chr16 90354753 + 60309839 60310642 L1PA4 6152 + 5347 6151 48078 691 0 1 112 chain 99188 chr16 90354753 + 60325880 60326978 L1PA3long 6157 - 15 1113 36975 1098 chain 70259 chr16 90354753 + 60326978 60327751 L1PA3long 6157 + 4270 5047 48010 90 0 4 683 chain 39959 chr16 90354753 + 60366232 60366768 LTR12 884 + 0 873 69379 24 1 0 29 0 39 179 0 67 40 2 0 66 4 1 70 0 1 45 0 236 76 chain 22631 chr16 90354753 + 60368983 60369242 AluY 311 + 35 294 117417 97 0 1 74 1 0 87 chain 4601 chr16 90354753 + 60404447 60404518 MER47A 366 - 188 279 199622 48 4 24 19 chain 41619 chr16 90354753 + 60415696 60416224 MLT2A2 560 - 13 560 67135 19 0 9 106 0 11 219 1 0 183 chain 3215 chr16 90354753 + 60416366 60416501 L1MC4 1079 + 76 235 220653 22 87 111 26 chain 30783 chr16 90354753 + 60421373 60421778 L1PA10 4194 - 33 433 82896 11 1 0 34 3 0 40 1 0 315 chain 31860 chr16 90354753 + 60490215 60490652 L1P3 4156 - 14 412 81081 27 2 1 8 2 0 165 37 0 146 0 1 50 chain 24490 chr16 90354753 + 60491285 60491561 L1PA4 6152 + 5875 6151 107599 276 chain 552670 chr16 90354753 + 60556649 60562667 L1PA2 6032 + 0 6024 1113 320 13 7 384 7 0 2428 0 15 2028 0 4 838 chain 506457 chr16 90354753 + 60567218 60573632 L1PA7 6471 - 11 6468 6438 143 21 20 272 0 1 324 0 2 83 0 1 519 0 1 515 0 1 7 1 0 164 1 0 252 4 3 108 0 5 285 1 2 108 0 4 142 0 1 151 0 1 245 0 4 127 0 10 32 10 7 45 0 2 113 0 4 73 0 2 49 0 1 4 1 2 104 0 2 919 0 1 167 0 1 129 37 31 63 4 7 131 11 15 116 4 0 87 0 2 132 42 45 14 1 0 253 0 3 400 chain 7325 chr16 90354753 + 60585597 60585692 L1MA2 4263 - 2010 2104 175265 24 1 0 70 chain 11603 chr16 90354753 + 60611709 60611834 HERVH-int 3825 - 3679 3804 153879 125 chain 28896 chr16 90354753 + 60612621 60613013 LTR7B 505 + 0 497 89466 105 0 10 69 1 96 42 0 1 42 1 0 21 1 2 53 2 1 55 chain 156834 chr16 90354753 + 60618437 60620195 L1PA4 6152 + 4388 6152 23748 453 0 4 1164 3 0 132 0 5 6 chain 13784 chr16 90354753 + 60628097 60628255 L1PA4 6152 + 5845 6003 145320 158 chain 13180 chr16 90354753 + 60628255 60628402 L1PA4 6152 + 6004 6151 147544 147 chain 161272 chr16 90354753 + 60629029 60630973 L1PA7 6471 + 4512 6461 23154 113 1 0 43 0 4 207 0 3 730 1 0 482 8 6 6 0 2 353 chain 12569 chr16 90354753 + 60638182 60638440 Tigger3a 397 - 24 342 149972 19 42 45 58 4 0 75 0 2 15 25 84 20 chain 20220 chr16 90354753 + 60639460 60639695 L1PA3long 6157 - 1 237 126476 162 5 6 68 chain 10381 chr16 90354753 + 60639699 60639848 LTR1 825 - 640 808 158781 69 5 12 21 5 17 49 chain 22958 chr16 90354753 + 60661647 60661980 L1PA8 5853 + 5523 5850 115815 41 1 0 46 2 0 58 0 1 9 2 1 14 5 4 43 3 2 18 2 1 89 chain 41814 chr16 90354753 + 60670122 60670670 MER41A 554 + 0 546 66872 170 3 9 335 8 0 32 chain 26002 chr16 90354753 + 60701171 60701478 AluY 311 + 0 303 100004 118 1 0 15 3 0 170 chain 9020 chr16 90354753 + 60705848 60706013 L1P4 1494 - 710 877 165487 25 24 25 49 8 9 59 chain 40866 chr16 90354753 + 60721150 60721602 L1PA4 6152 + 5684 6136 68071 452 chain 266005 chr16 90354753 + 60739229 60742193 L1PA4 6152 - 0 2957 15393 1393 7 0 1564 chain 14629 chr16 90354753 + 60742193 60742359 L1PA4 6152 + 3034 3200 142489 166 chain 32143 chr16 90354753 + 60763466 60763830 L1PA5 6144 - 9 380 80623 53 0 7 311 chain 123476 chr16 90354753 + 60777466 60779056 THE1A-int 1579 - 0 1578 29891 174 29 12 560 0 1 653 1 5 173 chain 11116 chr16 90354753 + 60793292 60793529 THE1B 368 - 15 251 155753 84 5 0 19 77 81 52 chain 4738 chr16 90354753 + 60809070 60809193 LTR8 732 + 485 609 198040 49 52 53 22 chain 9432 chr16 90354753 + 60830248 60830356 L1PA5 6144 + 6027 6135 163394 108 chain 127409 chr16 90354753 + 60833762 60835211 L1PA5 6144 + 4702 6144 28714 724 8 1 717 chain 9221 chr16 90354753 + 60839780 60839886 L1PA7 6471 + 6363 6469 164441 106 chain 175727 chr16 90354753 + 60861969 60864007 L1P2 5180 - 1076 3114 21371 227 10 12 176 2 0 1623 chain 101995 chr16 90354753 + 60864007 60865167 L1PA4 6152 + 4980 6141 36244 465 0 1 695 chain 21452 chr16 90354753 + 60876902 60877131 L1PA3long 6157 - 827 1056 119348 229 chain 74622 chr16 90354753 + 60877131 60877951 L1PA3long 6157 + 5336 6156 46201 820 chain 447981 chr16 90354753 + 60881417 60887085 HERVL-int 5654 + 1 5654 8813 139 1 0 141 0 6 150 2 1 166 0 1 50 3 1 292 1 2 1591 1 0 6 6 12 311 0 1 39 0 1 167 0 3 209 0 3 1446 0 12 360 26 3 29 0 3 43 7 6 29 18 5 147 0 23 20 1 0 2 32 0 233 chain 3471 chr16 90354753 + 60887505 60887543 MLT2A2 560 + 522 560 215804 38 chain 24376 chr16 90354753 + 60901435 60901740 AluY 311 + 0 304 108209 15 4 3 114 0 1 6 1 0 165 chain 112039 chr16 90354753 + 60910043 60911237 L1HS 6032 - 2672 3866 33605 1194 chain 248785 chr16 90354753 + 60911237 60913912 L1HS 6032 + 3381 6032 16323 1421 24 0 1230 chain 24854 chr16 90354753 + 60930383 60930656 L1HS 6032 + 5756 6028 105601 262 1 0 10 chain 523272 chr16 90354753 + 60969875 60977080 L1PA4 6152 + 3 6152 4841 65 4 7 88 16 44 772 1 0 164 0 2 62 1 0 4 0 1 162 0 1 630 5 6 516 2 0 287 0 7 177 0 1 696 9 20 178 1 0 521 0 1 308 1 0 523 1124 6 377 0 5 404 0 1 92 0 6 15 chain 89700 chr16 90354753 + 60975070 60976141 MER11C 1089 + 2 1073 39749 561 17 16 315 0 1 178 chain 3093 chr16 90354753 + 61005007 61005040 L1PA2 6032 + 5984 6017 223046 33 chain 49673 chr16 90354753 + 61015836 61016445 L1PA7 6471 + 5761 6461 59253 342 0 90 58 0 1 209 chain 4084 chr16 90354753 + 61042161 61042242 L1MC3 1789 - 383 454 206147 4 1 0 15 9 1 9 1 0 42 chain 7687 chr16 90354753 + 61064450 61064704 L1PA10 4194 - 3733 3944 173000 57 15 12 9 5 0 13 10 7 8 1 0 20 2 0 5 73 46 13 2 0 21 chain 4225 chr16 90354753 + 61069207 61069267 L1ME1 1623 + 1422 1476 204226 23 6 0 31 chain 31290 chr16 90354753 + 61075409 61075874 MLT2A1 477 + 0 463 82004 166 7 4 9 0 1 24 0 1 38 4 5 137 4 0 9 25 27 42 chain 30209 chr16 90354753 + 61098766 61099185 L1PA8 5853 + 5438 5853 84164 16 0 1 65 22 23 21 1 0 45 2 0 73 1 0 57 4 3 18 1 0 93 chain 519143 chr16 90354753 + 61124374 61130749 L1PA7 6471 + 0 6469 5248 413 7 7 603 1 8 35 2 0 183 0 6 209 1 0 131 3 6 25 1 0 409 17 13 54 0 2 205 0 20 15 0 1 299 0 42 246 1 0 146 0 1 163 4 5 158 0 1 18 0 1 97 13 9 78 0 10 259 1 0 542 1 0 67 0 1 145 2 1 172 2 0 24 1 0 129 6 0 4 0 6 15 0 1 222 0 1 12 0 1 162 0 1 239 0 5 75 0 1 122 0 6 488 0 1 148 chain 5636 chr16 90354753 + 61168049 61168118 L1PA8 5853 + 5783 5853 188695 4 0 1 65 chain 37812 chr16 90354753 + 61173855 61174299 L1PA5 6144 - 6 468 72396 31 1 18 347 0 1 65 chain 265028 chr16 90354753 + 61187803 61190779 L1PA5 6144 - 0 2985 15440 487 0 1 1032 1 0 238 0 11 707 2 0 509 chain 14824 chr16 90354753 + 61194159 61194322 L1PA4 6152 - 1 165 141866 154 0 1 9 chain 9299 chr16 90354753 + 61228088 61228193 L1PA4 6152 + 6047 6152 164066 105 chain 109611 chr16 90354753 + 61231798 61233377 THE1B-int 1605 + 0 1599 34297 33 0 2 326 66 1 64 0 25 12 6 8 48 1 0 93 7 59 161 0 8 116 6 1 34 53 54 131 11 12 411 chain 26421 chr16 90354753 + 61255395 61255706 AluYf5 307 - 0 307 98332 43 6 4 134 2 0 126 chain 31843 chr16 90354753 + 61255935 61256298 L1PA5 6144 + 5780 6144 81099 190 0 1 173 chain 26862 chr16 90354753 + 61286844 61287210 THE1A 353 + 0 353 96767 109 2 1 54 18 6 183 chain 10602 chr16 90354753 + 61294804 61294947 L1PA7 6471 + 5898 6042 157815 124 8 9 11 chain 36301 chr16 90354753 + 61294947 61295367 L1PA7 6471 + 6044 6464 74504 420 chain 42028 chr16 90354753 + 61308940 61309494 L1PA8 5853 - 0 599 66585 59 3 0 33 5 4 16 2 1 48 1 0 13 1 0 71 2 0 46 1 0 54 0 55 199 chain 30123 chr16 90354753 + 61310580 61310896 AluYb8 318 - 2 318 84411 316 chain 14245 chr16 90354753 + 61357157 61357589 MER61D 487 - 0 487 143744 22 1 0 4 3 7 47 62 44 20 2 1 10 3 1 30 107 160 52 6 28 51 2 0 10 chain 42903 chr16 90354753 + 61383254 61383789 MLT2A2 560 - 0 560 65536 70 0 1 76 0 11 23 0 12 163 0 1 203 chain 29189 chr16 90354753 + 61385708 61386017 AluYb8 318 + 0 309 88107 309 chain 13136 chr16 90354753 + 61386663 61386965 L1PB1 5432 + 5105 5376 147698 12 3 0 21 37 29 53 2 1 16 1 0 44 39 27 19 3 1 4 1 0 14 2 0 24 1 0 6 chain 3185 chr16 90354753 + 61462994 61463029 MER3 215 + 134 169 221203 35 chain 3130 chr16 90354753 + 61475137 61475260 L1MCb 1641 + 879 1003 222355 15 60 61 23 0 3 5 3 0 17 chain 125514 chr16 90354753 + 61485228 61486750 L1PA7 6471 + 4949 6468 29241 36 1 0 313 0 1 32 5 6 262 0 1 14 0 3 380 9 0 284 0 1 186 chain 10208 chr16 90354753 + 61492967 61493098 L1PA8 5853 - 183 311 159575 62 2 0 44 1 0 22 chain 136140 chr16 90354753 + 61495507 61497012 L1PA3long 6157 + 4636 6142 26808 1218 0 1 287 chain 22195 chr16 90354753 + 61509085 61509350 L1PA7 6471 + 6195 6460 119372 265 chain 10388 chr16 90354753 + 61511964 61512090 MER2 342 - 127 251 158746 104 2 0 20 chain 5005 chr16 90354753 + 61516347 61516410 L1PA7 6471 + 5691 5754 195082 63 chain 58513 chr16 90354753 + 61516410 61517108 L1PA7 6471 + 5759 6459 53692 528 0 1 54 0 1 116 chain 29409 chr16 90354753 + 61530278 61531092 L1PA8 5853 + 5395 5853 87027 75 6 0 51 2 0 5 12 11 27 1 0 46 3 1 69 23 21 39 2 1 19 341 0 93 chain 21345 chr16 90354753 + 61540002 61540256 SVA_A 1864 + 1602 1864 122707 104 12 20 138 chain 30296 chr16 90354753 + 61545570 61545888 AluYb8 318 - 0 318 83937 318 chain 75263 chr16 90354753 + 61559231 61560082 L1PA4 6152 - 12 866 45888 33 0 1 85 0 1 116 0 1 617 chain 28966 chr16 90354753 + 61560082 61560402 L1P1 4361 + 2829 3149 88730 320 chain 6666 chr16 90354753 + 61597478 61597571 L1MC3 1789 - 925 1013 179938 54 5 0 34 chain 4813 chr16 90354753 + 61605811 61605871 MSTA 426 - 339 399 197193 60 chain 82690 chr16 90354753 + 61637221 61638272 L1PA8 5853 - 386 1431 42465 418 6 10 25 16 4 175 0 1 150 0 1 87 0 1 6 1 0 167 chain 28590 chr16 90354753 + 61638272 61638653 L1PA8 5853 + 5479 5853 90781 85 1 0 44 2 0 71 1 0 8 4 3 50 2 1 19 1 0 93 chain 21334 chr16 90354753 + 61666524 61666777 L1PA5 6144 - 13 267 122738 141 0 1 112 chain 81720 chr16 90354753 + 61669564 61670595 L1PA7 6471 + 5414 6456 42882 124 1 0 23 0 8 36 9 12 5 3 0 81 0 1 190 0 2 241 1 0 157 13 15 147 chain 24992 chr16 90354753 + 61699209 61699569 L1PA8 5853 + 5469 5849 104845 63 12 38 39 2 0 70 1 0 9 1 0 50 4 3 16 5 4 88 chain 38042 chr16 90354753 + 61709100 61709516 L1PA2 6032 + 5616 6032 72072 416 chain 8558 chr16 90354753 + 61712439 61712537 L1PA7 6471 - 7 105 167973 98 chain 9489 chr16 90354753 + 61783976 61784107 L1PA16 3655 - 67 195 163122 11 3 0 117 chain 558365 chr16 90354753 + 61815982 61822005 L1PA2 6032 + 3 6032 466 804 0 2 891 0 1 4172 0 3 156 chain 558904 chr16 90354753 + 61835359 61841393 L1PA2 6032 + 3 6032 421 2195 1 0 3763 4 0 71 chain 16443 chr16 90354753 + 61843256 61843497 L1PA8 5853 + 5608 5848 137086 56 0 3 8 23 21 43 3 2 19 2 1 87 chain 26256 chr16 90354753 + 61877594 61877880 L1PA4 6152 - 457 743 98991 286 chain 41009 chr16 90354753 + 61877880 61878336 L1PA4 6152 + 5691 6143 67888 316 4 0 136 chain 5709 chr16 90354753 + 61908684 61908764 MADE1 96 + 0 96 188022 27 1 17 52 chain 25158 chr16 90354753 + 61932886 61933192 L1PA7 6471 - 6 309 103967 6 3 0 297 chain 2654 chr16 90354753 + 61938811 61938914 MER1B 344 - 109 210 230981 11 2 0 17 0 1 5 45 45 5 1 0 17 chain 7063 chr16 90354753 + 61948551 61948629 L1PA5 6144 + 6057 6135 177001 78 chain 134616 chr16 90354753 + 61952207 61953694 L1HS 6032 + 2 1489 27090 254 1 0 450 0 1 782 chain 133222 chr16 90354753 + 61953711 61955153 L1PA3long 6157 + 4700 6142 27388 1442 chain 32862 chr16 90354753 + 62004689 62005172 LTR7B 505 + 0 496 79433 105 0 10 69 6 13 28 34 27 26 0 2 41 0 2 42 1 0 21 0 1 54 2 1 54 chain 37873 chr16 90354753 + 62026090 62026505 L1PA3long 6157 + 5742 6157 72314 415 chain 50051 chr16 90354753 + 62033707 62034352 L1PA8 5853 - 0 644 58984 61 8 4 28 1 0 19 2 1 46 1 0 5 8 7 72 2 0 48 5 4 42 0 10 297 chain 30077 chr16 90354753 + 62046876 62047195 AluYb9 318 + 0 318 84572 123 1 0 195 chain 22958 chr16 90354753 + 62079357 62079653 AluSc 308 - 3 297 115813 251 11 9 34 chain 60095 chr16 90354753 + 62119455 62120175 L1PA7 6471 + 5731 6457 52774 251 3 4 43 0 5 423 chain 60340 chr16 90354753 + 62124669 62125321 L1PA2 6032 + 5234 5886 52660 652 chain 13073 chr16 90354753 + 62125321 62125462 L1PA2 6032 + 5887 6028 147939 141 chain 45744 chr16 90354753 + 62136849 62137410 LTR19B 566 - 0 566 62278 53 5 6 458 0 4 45 chain 46971 chr16 90354753 + 62152455 62153022 L1PA7 6471 - 3 571 61229 316 0 1 251 chain 48675 chr16 90354753 + 62153023 62153635 L1P1 4361 + 3729 4341 59976 212 7 9 64 0 1 133 1 0 157 1 0 23 2 1 12 chain 26334 chr16 90354753 + 62157739 62158020 AluYb9 318 + 0 281 98681 281 chain 37931 chr16 90354753 + 62175631 62176179 MLT2A2 560 - 0 559 72235 74 0 1 72 3 14 184 48 46 50 0 1 117 chain 4157 chr16 90354753 + 62182545 62182760 MLT1C 463 + 74 294 205135 27 29 23 14 1 0 6 0 2 19 102 112 17 chain 38476 chr16 90354753 + 62195135 62195562 L1PA3long 6157 + 5720 6147 71478 427 chain 9440 chr16 90354753 + 62221443 62221550 U6 107 - 0 107 163356 107 chain 22281 chr16 90354753 + 62250357 62250634 L1P3 4156 - 17 292 118992 34 3 1 240 chain 24475 chr16 90354753 + 62251333 62251778 LTR7B 505 - 10 505 107677 15 2 0 26 14 13 97 114 136 84 0 31 93 chain 45227 chr16 90354753 + 62293185 62293801 MER41B 635 + 14 635 62797 114 0 1 116 0 1 4 1 0 201 18 17 110 9 8 28 0 6 15 chain 8203 chr16 90354753 + 62301167 62301268 L1PREC2 3366 + 2247 2347 169941 67 1 0 33 chain 30046 chr16 90354753 + 62304930 62305315 L1PA6 6164 + 5764 6156 84656 9 0 5 221 4 5 11 1 2 139 chain 29885 chr16 90354753 + 62334133 62334488 L1PA5 6144 - 9 365 85147 351 0 1 4 chain 59903 chr16 90354753 + 62354384 62355049 L1PA4 6152 - 2 668 52874 401 0 1 264 chain 38465 chr16 90354753 + 62367218 62367650 L1PA5 6144 + 5711 6143 71496 432 chain 31142 chr16 90354753 + 62422969 62423479 L1PB1 5432 + 4936 5411 82268 178 3 0 24 1 0 9 1 0 11 5 1 8 2 0 52 1 0 17 1 0 45 1 0 8 32 19 19 2 0 4 1 0 15 2 0 24 1 0 21 1 0 11 1 0 9 chain 3989 chr16 90354753 + 62432342 62432659 MSTB1 431 - 42 393 207546 37 44 41 17 4 209 8 170 0 13 5 7 19 chain 110304 chr16 90354753 + 62461435 62462754 L1PA7 6471 + 5140 6459 34126 481 8 7 211 9 5 357 0 1 40 0 1 95 0 3 118 chain 57178 chr16 90354753 + 62478945 62479702 MER4E 760 + 0 760 54420 17 2 0 37 0 1 4 1 0 88 0 10 9 1 0 5 11 5 159 5 4 107 4 8 23 2 1 282 chain 131008 chr16 90354753 + 62522413 62523840 L1PA3long 6157 - 0 1430 27860 847 0 3 580 chain 73478 chr16 90354753 + 62541956 62542888 MER11B 1079 - 150 1079 46798 52 0 1 105 7 2 101 1 0 350 0 4 55 3 0 6 10 11 242 chain 36219 chr16 90354753 + 62548889 62549312 L1PA7 6471 - 12 435 74599 423 chain 21809 chr16 90354753 + 62552574 62552877 L1PA8 5853 - 0 300 120989 93 1 0 19 2 1 47 2 1 11 1 0 73 2 0 22 0 4 18 1 0 11 chain 49621 chr16 90354753 + 62552877 62553461 L1P3 4156 + 2634 3226 59303 252 0 4 11 1 0 5 0 1 186 0 4 129 chain 18055 chr16 90354753 + 62555127 62555345 MER57A1 433 + 0 218 132713 218 chain 105134 chr16 90354753 + 62586284 62587471 L1PA5 6144 - 3 1188 35377 6 3 0 501 2 0 335 0 3 340 chain 170970 chr16 90354753 + 62587471 62589431 L1PA5 6144 + 2974 4941 21947 218 0 1 9 7 2 75 1 0 401 0 2 194 25 27 98 0 4 486 0 4 446 chain 83676 chr16 90354753 + 62645083 62646016 L1PA4 6152 - 1 938 42043 849 0 4 84 chain 37208 chr16 90354753 + 62646016 62646419 L1PA4 6152 + 4820 5224 72835 141 0 1 262 chain 5226 chr16 90354753 + 62663086 62663177 L1PA16 3655 - 80 170 192769 12 15 7 6 0 7 58 chain 54993 chr16 90354753 + 62665229 62665863 L1PA5 6144 - 6 647 55708 145 1 2 460 0 6 28 chain 18844 chr16 90354753 + 62675698 62676055 THE1B 368 - 0 368 130532 56 22 26 43 61 67 59 9 10 107 chain 4844 chr16 90354753 + 62676060 62676460 MLT1F2 592 + 197 590 196854 8 12 0 4 4 0 15 6 7 37 277 285 37 chain 3465 chr16 90354753 + 62685339 62685375 MLT1A0 366 + 75 111 215906 36 chain 78027 chr16 90354753 + 62702717 62703752 MER11A 1151 + 0 1151 44498 45 10 109 140 4 0 33 0 2 231 1 0 30 15 1 217 0 1 12 5 38 112 0 1 115 1 0 64 chain 34446 chr16 90354753 + 62712821 62713321 LTR10B 488 - 0 488 76999 13 8 7 128 4 3 227 49 39 71 chain 11804 chr16 90354753 + 62759210 62759349 LTR12C 1709 + 928 1067 153019 139 chain 3085 chr16 90354753 + 62759403 62759438 LTR12C 1709 + 683 718 223199 35 chain 35561 chr16 90354753 + 62830749 62831196 LTR2 463 + 0 463 75465 162 7 27 38 5 0 47 0 1 188 chain 27616 chr16 90354753 + 62905201 62905576 MLT2A1 477 + 0 384 94309 15 0 4 123 26 31 211 chain 27762 chr16 90354753 + 62944603 62944978 THE1C 375 - 0 375 93830 26 1 0 177 4 0 6 7 0 27 0 4 82 0 8 45 chain 26334 chr16 90354753 + 63013149 63013531 LTR7Y 441 - 44 441 98677 37 0 4 28 63 73 7 0 1 247 chain 297110 chr16 90354753 + 63014743 63019005 HERVH-int 3825 - 0 3825 13578 225 0 2 231 3 9 5 6 0 15 8 218 39 27 29 1048 0 4 480 0 2 76 0 1 662 2 1 81 1 93 24 249 0 10 1 0 38 5 0 44 494 0 488 chain 10926 chr16 90354753 + 63017677 63017825 HERVH-int 3825 - 3245 3389 156505 10 1 0 30 8 5 68 1 0 4 0 1 26 chain 4620 chr16 90354753 + 63017851 63017899 HERVH-int 3825 - 3290 3338 199406 48 chain 945 chr16 90354753 + 63018049 63018075 HERVH-int 3825 - 3363 3389 206328 26 chain 2765 chr16 90354753 + 63018114 63018152 HERVH-int 3825 - 3245 3285 229254 10 1 0 10 0 3 17 chain 10100 chr16 90354753 + 63018318 63018444 HERVH-int 3825 - 3268 3389 160093 25 5 0 96 chain 3547 chr16 90354753 + 63018444 63018516 HERVH-int 3825 - 3269 3317 197593 24 5 0 12 19 0 12 chain 9133 chr16 90354753 + 63019014 63019112 LTR7Y 441 - 9 107 164893 98 chain 547034 chr16 90354753 + 63026274 63032396 L1PA3long 6157 - 0 6147 1825 98 2 1 744 0 4 1436 1 2 99 0 21 37 4 0 1024 0 1 144 0 1 1080 0 1 158 0 9 126 0 1 47 11 1 966 0 1 145 chain 26519 chr16 90354753 + 63037699 63038078 MLT2A1 477 - 97 472 97979 17 1 2 89 8 1 27 1 4 36 0 1 23 0 1 9 9 6 159 chain 5561 chr16 90354753 + 63042856 63042932 MADE1 96 + 0 96 189467 22 3 23 51 chain 70386 chr16 90354753 + 63050208 63051448 L1PA10 4194 - 44 973 48220 34 3 0 34 4 0 136 1 5 142 7 10 397 312 0 67 0 1 103 chain 13679 chr16 90354753 + 63075624 63075777 L1PA5 6144 - 3 156 145674 153 chain 11247 chr16 90354753 + 63080400 63080586 L1PB1 5432 + 5120 5296 155233 15 1 0 12 16 11 11 2 0 51 2 1 59 1 0 16 chain 11263 chr16 90354753 + 63115053 63115226 MER30 238 - 9 199 155182 21 0 1 51 1 4 9 17 30 74 chain 5274 chr16 90354753 + 63124765 63124890 MER58A 224 + 42 182 192283 38 44 59 43 chain 41771 chr16 90354753 + 63130002 63130550 MLT2A2 560 + 0 560 66940 190 12 11 4 0 1 200 0 11 73 0 1 69 chain 54825 chr16 90354753 + 63132833 63133435 L1P1 4361 - 1824 2427 55818 229 0 1 373 chain 13733 chr16 90354753 + 63133435 63133592 L1PA2 6032 + 5873 6030 145493 157 chain 538850 chr16 90354753 + 63153855 63159875 L1PA3long 6157 + 2 6156 3015 33 2 1 105 17 13 460 0 4 158 0 128 684 1 0 7 2 1 1663 0 4 460 0 1 355 1 0 1432 0 1 311 0 1 228 0 3 101 chain 11456 chr16 90354753 + 63162918 63163177 THE1C 375 - 0 221 154482 15 0 3 14 3 1 9 0 6 16 48 0 87 1 4 14 3 0 5 16 19 28 chain 8838 chr16 90354753 + 63164007 63164140 LTR12C 1709 + 932 1065 166445 45 13 13 75 chain 3206 chr16 90354753 + 63164145 63164231 LTR12C 1709 + 766 877 195200 7 15 0 45 1 41 18 chain 501202 chr16 90354753 + 63181609 63187187 L1PA3long 6157 + 35 6157 6774 59 0 526 542 0 3 25 1 4 2067 5 9 453 0 1 220 0 1 136 1 0 132 6 7 945 1 0 831 0 7 154 chain 7623 chr16 90354753 + 63191951 63192049 MSTC-int 1625 + 1519 1624 173394 92 0 7 6 chain 28681 chr16 90354753 + 63256358 63256668 L1PA2 6032 - 411 721 90400 310 chain 30996 chr16 90354753 + 63256668 63257025 L1PA2 6032 + 5671 6032 82520 200 7 11 150 chain 3721 chr16 90354753 + 63288070 63288113 L1PB2 3958 + 3795 3838 211620 43 chain 52845 chr16 90354753 + 63308352 63308923 L1PA2 6032 + 5461 6032 57105 571 chain 42879 chr16 90354753 + 63313051 63313840 L1PB 1623 - 39 754 65557 9 2 0 21 142 108 83 0 1 51 61 12 126 0 5 50 0 3 113 5 7 126 chain 10390 chr16 90354753 + 63326267 63326402 THE1C 375 + 235 375 158741 79 4 9 52 chain 39416 chr16 90354753 + 63356261 63356785 MER41A 554 + 6 534 70136 357 1 0 29 16 21 121 chain 553463 chr16 90354753 + 63421981 63428010 L1PA2 6032 + 4 6032 1007 253 1 0 5775 chain 6369 chr16 90354753 + 63431426 63431496 L1PA5 6144 - 16 86 182250 70 chain 2929 chr16 90354753 + 63433251 63433282 L1M3 994 - 160 191 226510 31 chain 4696 chr16 90354753 + 63433375 63433478 L1M3 994 + 171 282 198569 26 24 23 34 3 12 16 chain 29344 chr16 90354753 + 63442444 63442754 AluYa5 310 - 0 310 87324 310 chain 8412 chr16 90354753 + 63460489 63460600 MER50 708 - 107 213 168779 4 1 0 39 4 0 63 chain 27636 chr16 90354753 + 63462595 63462900 L1PA5 6144 - 531 836 94245 305 chain 46377 chr16 90354753 + 63462900 63463451 L1PA5 6144 + 5587 6144 61701 194 0 7 209 1 0 147 chain 84612 chr16 90354753 + 63463814 63465004 HSMAR1 1287 - 8 1287 41679 135 8 82 114 38 41 226 15 14 81 0 4 25 10 8 384 0 11 154 chain 7826 chr16 90354753 + 63477186 63477292 L1P1 4361 - 20 124 172149 12 2 1 23 1 0 68 chain 135554 chr16 90354753 + 63477292 63478809 L1PA4 6152 + 4623 6139 26915 6 0 1 1188 2 0 321 chain 12195 chr16 90354753 + 63487012 63487157 Tigger4 2445 + 817 962 151443 145 chain 196906 chr16 90354753 + 63516092 63518317 L1PA4 6152 - 9 2247 19433 325 0 1 515 0 4 272 0 1 4 1 0 524 0 4 141 0 4 443 chain 9968 chr16 90354753 + 63518317 63518427 L1PA4 6152 + 3773 3883 158987 110 chain 43930 chr16 90354753 + 63558898 63559410 MER9a2 513 + 0 513 64296 128 0 1 384 chain 17394 chr16 90354753 + 63561999 63562228 AluSc 308 + 57 285 134526 65 0 1 8 12 10 144 chain 19209 chr16 90354753 + 63566087 63566307 L1PA4 6152 - 9 230 129507 123 0 1 97 chain 3792 chr16 90354753 + 63581846 63581944 L1MC1 2226 - 833 930 210498 27 39 38 32 chain 25748 chr16 90354753 + 63586195 63586501 L1PA7 6471 + 6152 6461 101095 105 0 3 201 chain 8606 chr16 90354753 + 63626423 63626554 MER4A1_ 611 - 401 585 167698 39 0 1 35 12 65 40 1 0 4 chain 6460 chr16 90354753 + 63644120 63644191 L1P4 1494 + 899 970 181556 71 chain 3067 chr16 90354753 + 63645068 63645106 L1PREC2 3366 + 2698 2737 223633 18 0 1 20 chain 76680 chr16 90354753 + 63650567 63651595 LTR12D 1347 - 1 1347 45130 63 0 4 126 4 203 239 0 17 29 0 41 53 4 35 81 0 2 113 22 45 13 0 4 8 8 5 265 chain 42936 chr16 90354753 + 63667520 63668404 LTR19B 566 - 0 566 65494 262 329 7 203 1 6 29 4 3 56 chain 34910 chr16 90354753 + 63669169 63669728 L1PB2 3958 - 120 660 76330 63 1 0 22 9 7 64 2 1 64 1 0 24 5 7 11 7 19 16 1 0 51 22 0 37 4 0 11 1 3 75 1 0 54 2 0 11 chain 3948 chr16 90354753 + 63673891 63673940 MLT1A1 405 - 41 89 208164 33 1 0 15 chain 42502 chr16 90354753 + 63693136 63693665 L1PA7 6471 + 5942 6470 66010 322 1 0 17 0 1 5 1 0 183 chain 29200 chr16 90354753 + 63727292 63727603 AluYa5 310 - 0 310 88051 192 1 0 118 chain 142085 chr16 90354753 + 63755833 63757521 L1PA8A 6298 - 7 1698 25806 798 1 4 516 0 1 147 1 0 225 chain 37574 chr16 90354753 + 63789949 63790411 LTR2 463 - 0 463 72716 65 16 17 381 chain 44964 chr16 90354753 + 63794190 63794742 LTR14C 587 + 0 587 63102 179 0 34 333 0 1 40 chain 26562 chr16 90354753 + 63817634 63817912 AluYa5 310 + 27 305 97799 278 chain 19112 chr16 90354753 + 63817940 63818161 L1PA4 6152 - 0 218 129785 5 3 0 213 chain 5380 chr16 90354753 + 63818188 63818255 L1MD 993 - 513 580 191194 67 chain 30150 chr16 90354753 + 63821575 63821941 L1PA7 6471 + 6092 6458 84330 366 chain 127840 chr16 90354753 + 63853604 63855282 L1P2 5180 + 2 1702 28610 137 30 29 79 1 0 67 4 0 193 1 0 8 1 0 196 12 19 56 2 1 5 1 0 141 0 25 744 chain 39977 chr16 90354753 + 63855282 63855752 L1PA5 6144 + 5648 6132 69351 141 0 9 185 0 5 144 chain 25497 chr16 90354753 + 63894629 63894932 AluYk4 311 - 10 311 102239 201 2 0 100 chain 124417 chr16 90354753 + 63901506 63902990 L1PA6 6164 - 3 1489 29565 6 3 0 144 0 1 177 2 1 89 0 1 253 0 1 168 3 6 639 chain 5614 chr16 90354753 + 63902990 63903057 L1PA6 6164 + 4609 4676 188935 67 chain 13495 chr16 90354753 + 63906235 63906405 Tigger3a 397 - 74 244 146373 170 chain 10978 chr16 90354753 + 63912120 63912305 L1PA11 4918 - 401 579 156282 12 4 0 10 2 0 6 0 2 13 15 13 66 1 0 56 chain 17405 chr16 90354753 + 63915150 63915456 THE1B 368 - 59 367 134490 6 2 0 50 27 25 14 34 41 4 1 0 168 chain 22918 chr16 90354753 + 63967498 63967833 THE1B 368 - 20 368 116023 99 4 13 20 5 9 9 0 1 28 1 0 55 7 6 68 0 1 39 chain 28055 chr16 90354753 + 64013330 64013720 L1PA8 5853 - 0 387 92807 43 0 4 45 2 1 19 2 1 50 15 13 72 2 0 43 1 0 96 chain 30217 chr16 90354753 + 64032607 64033042 MER4A1 472 + 7 450 84138 7 0 2 20 0 5 189 1 22 92 0 1 15 32 11 79 chain 3334 chr16 90354753 + 64065373 64065411 MER1A 529 - 153 191 218335 38 chain 5273 chr16 90354753 + 64086885 64086975 L1M3f 2199 + 1182 1269 192286 13 13 9 7 0 1 57 chain 25578 chr16 90354753 + 64092670 64092997 THE1C-int 1605 - 7 336 101836 66 0 1 125 0 3 129 2 0 5 chain 20792 chr16 90354753 + 64100648 64100915 AluSc 308 + 40 299 124633 238 0 1 12 9 0 8 chain 122571 chr16 90354753 + 64105341 64106796 LTR12C 1709 - 0 1709 30200 59 0 131 43 10 13 235 0 4 106 3 1 5 1 0 264 0 118 490 0 1 239 chain 6986 chr16 90354753 + 64124663 64124737 L1PA4 6152 + 6065 6139 177568 74 chain 158106 chr16 90354753 + 64148101 64149908 L1PA5 6144 + 4336 6144 23575 386 2 1 425 0 1 280 0 1 551 1 6 6 1 0 5 4 0 146 chain 34984 chr16 90354753 + 64169357 64169789 L1PA8 5853 - 119 546 76203 46 1 0 9 2 1 66 1 0 48 1 0 49 1 0 208 chain 95446 chr16 90354753 + 64182574 64183630 L1PA3long 6157 + 5102 6157 37972 156 1 0 899 chain 109544 chr16 90354753 + 64190516 64191776 L1PA5 6144 + 4855 6127 34308 9 0 1 426 1 4 363 0 8 461 chain 25517 chr16 90354753 + 64203884 64204186 AluY 311 + 0 300 102146 118 4 0 150 0 2 30 chain 14657 chr16 90354753 + 64212985 64213346 THE1B 368 + 2 368 142407 75 161 166 125 chain 26278 chr16 90354753 + 64273475 64273784 AluY 311 + 3 311 98908 130 1 0 178 chain 7253 chr16 90354753 + 64288228 64288317 MER2 342 - 115 206 175746 51 0 2 38 chain 55121 chr16 90354753 + 64313951 64314687 LTR12 884 - 15 884 55631 397 10 12 39 0 1 28 0 1 13 2 0 156 1 133 35 1 0 54 chain 22036 chr16 90354753 + 64320327 64320626 AluY 311 + 1 304 120082 18 0 1 51 5 8 40 1 0 13 0 1 10 4 1 6 0 3 151 chain 43803 chr16 90354753 + 64330370 64330918 MER41A 554 + 0 554 64444 87 8 9 369 0 5 84 chain 31473 chr16 90354753 + 64353798 64354394 L1PB1 5432 - 14 556 81686 14 1 0 13 1 0 21 1 0 24 2 0 14 8 5 14 9 0 9 1 2 6 4 0 15 1 0 44 1 0 16 2 1 50 3 1 11 16 11 13 1 0 7 56 33 41 2 1 5 0 1 170 chain 3403 chr16 90354753 + 64368624 64368673 L1M3 994 + 693 737 217013 7 5 0 37 chain 113919 chr16 90354753 + 64377616 64379098 LTR12C 1709 + 0 1699 33113 300 0 1 158 8 9 100 9 10 141 0 118 126 0 1 4 0 40 29 0 2 33 0 47 26 4 5 74 11 4 342 0 8 24 19 23 74 chain 8621 chr16 90354753 + 64386674 64386780 MLT1A0 366 + 217 323 167632 106 chain 9736 chr16 90354753 + 64402979 64403092 L1PA3long 6157 + 6039 6152 161908 113 chain 21966 chr16 90354753 + 64419716 64420047 THE1B 368 - 12 368 120372 103 40 51 4 1 0 139 0 15 44 chain 66209 chr16 90354753 + 64422444 64423183 L1PA5 6144 - 3 742 49998 739 chain 164749 chr16 90354753 + 64428720 64430530 L1PA3long 6157 - 0 1810 22687 1810 chain 142680 chr16 90354753 + 64465405 64467182 L1PA7 6471 - 2 1763 25700 11 3 0 146 12 13 91 0 1 458 0 1 118 0 7 382 0 1 254 21 1 155 4 0 122 chain 70303 chr16 90354753 + 64467182 64468067 L1P3 4156 + 3256 4139 48103 225 1 3 458 0 1 58 3 1 98 7 5 8 1 0 26 chain 7586 chr16 90354753 + 64491490 64491597 MLT1B 390 - 4 111 173629 23 1 0 4 2 3 77 chain 16980 chr16 90354753 + 64500194 64500427 L1PA7 6471 - 1374 1607 135643 148 12 11 46 0 1 27 chain 23558 chr16 90354753 + 64500433 64500707 L1PA7 6471 - 1619 1931 112339 153 0 38 121 chain 110344 chr16 90354753 + 64500707 64502095 L1PA7 6471 + 5100 6470 34110 408 0 2 87 1 0 24 1 0 77 0 2 438 0 1 157 27 28 80 4 2 14 32 12 38 chain 25204 chr16 90354753 + 64548671 64548965 AluSq10 312 - 7 301 103723 294 chain 349862 chr16 90354753 + 64643499 64647962 L1PA8A 6298 - 7 4466 11610 79 5 4 376 3 1 9 0 9 318 0 6 493 5 1 75 1 2 93 1 0 47 8 0 528 0 5 249 5 19 98 0 1 248 9 8 175 16 24 68 1 2 17 7 5 5 0 2 65 0 4 609 0 4 49 5 0 24 15 0 56 34 3 266 0 9 119 0 1 142 25 26 115 chain 29997 chr16 90354753 + 64659972 64660290 AluYb8 318 - 0 318 84821 318 chain 72690 chr16 90354753 + 64665297 64666088 L1PA3long 6157 - 0 790 47174 20 1 0 770 chain 96145 chr16 90354753 + 64673620 64674823 L1PA8A 6298 - 8 1217 37782 581 0 1 105 0 10 20 2 1 85 1 0 193 8 4 115 9 10 84 chain 7339 chr16 90354753 + 64685950 64686041 L1PA15 4387 + 372 467 175166 70 0 4 21 chain 12205 chr16 90354753 + 64694387 64694577 MER30 238 - 0 202 151403 39 3 0 56 5 31 11 11 0 65 chain 16804 chr16 90354753 + 64781379 64781740 THE1B 368 - 0 368 136105 56 7 6 56 112 119 14 10 11 106 chain 141819 chr16 90354753 + 64809022 64810640 L1PA4 6152 + 4522 6143 25855 801 3 4 670 7 8 33 0 1 104 chain 28020 chr16 90354753 + 64832317 64832655 L1PA7 6471 - 13 351 92929 338 chain 9461 chr16 90354753 + 64833829 64833948 L1PA8A 6298 - 409 530 161292 7 0 1 38 0 1 74 chain 31125 chr16 90354753 + 64833948 64834351 L1PA8A 6298 + 5887 6291 82294 292 8 9 103 chain 28710 chr16 90354753 + 64834698 64835001 AluYk12 309 - 6 309 90296 303 chain 57314 chr16 90354753 + 64910446 64911459 L1PB1 5432 - 40 1046 54331 22 1 0 24 2 0 14 9 6 18 23 12 13 3 2 45 111 102 20 1 0 5 12 27 122 10 11 112 21 25 6 0 2 6 0 2 168 3 0 242 chain 3176 chr16 90354753 + 64946702 64946817 MER5B 177 + 13 126 221406 28 64 62 23 chain 18112 chr16 90354753 + 64959103 64959422 L1PA8 5853 - 37 353 132564 40 16 20 15 13 12 33 11 9 8 1 0 69 2 0 45 2 1 64 chain 30184 chr16 90354753 + 64963719 64964107 MSTA-int 1630 - 15 403 84237 186 1 0 123 1 2 77 chain 4423 chr16 90354753 + 64998750 64998801 Tigger3b 1229 - 407 458 201667 51 chain 10860 chr16 90354753 + 64998801 64998925 L1PA5 6144 - 0 124 156743 124 chain 19307 chr16 90354753 + 65040617 65040891 THE1B 368 + 0 285 129221 44 6 20 97 2 1 38 2 0 85 chain 127299 chr16 90354753 + 65073156 65074611 L1PA4 6152 + 4682 6143 28743 310 0 1 307 0 1 75 4 6 108 0 3 405 1 0 245 chain 31631 chr16 90354753 + 65110447 65110816 L1PA7 6471 - 15 384 81431 369 chain 6944 chr16 90354753 + 65130154 65130241 MLT1A1 405 + 294 381 177869 87 chain 10958 chr16 90354753 + 65168782 65168911 L1PA7 6471 + 6338 6467 156366 129 chain 68808 chr16 90354753 + 65227488 65228373 L1PA8 5853 - 5 885 48891 87 2 1 19 2 1 44 9 8 9 2 1 70 2 0 44 1 0 76 7 10 432 0 1 36 2 0 41 chain 40217 chr16 90354753 + 65263707 65264159 LTR7 482 - 0 482 69008 198 0 30 254 chain 277996 chr16 90354753 + 65265423 65268794 HERVH-int 3825 - 0 3685 14750 458 37 247 1404 4 31 243 0 1 138 0 3 77 15 0 194 0 3 108 0 3 67 0 3 63 0 3 14 0 2 7 0 1 56 2 1 42 0 37 15 28 0 24 1 0 10 1 0 25 0 56 266 0 11 72 chain 40199 chr16 90354753 + 65268802 65269252 LTR7 482 - 0 482 69030 187 0 31 259 0 1 4 chain 292240 chr16 90354753 + 65270812 65273978 L1PA2 6032 - 0 3167 13880 628 0 1 2538 chain 29564 chr16 90354753 + 65309158 65309592 LTR7Y 441 - 0 441 86360 197 68 84 57 9 0 103 chain 165503 chr16 90354753 + 65310852 65312861 HERVH-int 3825 - 0 2258 22590 225 3 8 254 8 218 36 12 14 552 11 12 502 0 4 284 8 35 114 chain 6837 chr16 90354753 + 65312861 65312937 LTR7 482 - 406 482 178674 76 chain 3877 chr16 90354753 + 65329512 65329680 HAL1-2a_MD 234 - 157 234 209207 20 9 11 13 93 0 33 chain 3366 chr16 90354753 + 65338301 65338355 MER20 218 - 141 196 217743 28 8 9 18 chain 43313 chr16 90354753 + 65354866 65355404 L1PB1 5432 - 845 1384 65027 217 0 1 321 chain 14179 chr16 90354753 + 65357730 65358076 L1PB1 5432 + 5114 5427 143958 24 1 0 4 5 4 12 18 12 48 6 5 14 1 0 44 40 27 19 7 4 15 2 0 24 1 0 21 1 0 12 2 1 18 2 0 5 chain 539274 chr16 90354753 + 65390646 65396641 L1PA3long 6157 + 10 6156 2937 142 4 16 148 1 2 463 0 128 540 5 14 1804 0 5 443 4 0 2441 chain 15140 chr16 90354753 + 65412398 65412760 L1PB1 5432 - 2 325 140947 8 2 0 18 15 13 21 1 0 24 2 0 15 1 0 4 2 0 19 19 7 5 1 0 16 6 5 39 1 0 15 2 1 45 8 6 10 6 2 11 1 0 12 1 0 20 5 0 7 chain 42122 chr16 90354753 + 65469180 65469649 L1PA4 6152 - 102 564 66478 39 7 0 423 chain 7295 chr16 90354753 + 65469649 65469726 L1PA4 6152 + 6059 6136 175476 77 chain 6162 chr16 90354753 + 65474688 65474758 L1PA5 6144 + 5824 5894 183860 70 chain 25999 chr16 90354753 + 65477111 65477603 L1PB1 5432 - 10 521 100021 18 2 1 11 1 0 22 1 0 13 70 63 7 8 0 6 1 0 45 1 0 15 2 1 52 17 11 13 0 47 118 1 0 68 chain 15651 chr16 90354753 + 65478969 65479183 L1PA8 5853 - 0 211 139428 93 1 0 16 1 0 14 0 1 33 4 3 14 1 0 37 chain 6733 chr16 90354753 + 65490600 65490698 HSMAR1 1287 - 1188 1287 179450 45 5 6 48 chain 15679 chr16 90354753 + 65490747 65490923 L1PA4 6152 - 9 186 139333 22 0 1 154 chain 13694 chr16 90354753 + 65495672 65495948 L1PB1 5432 + 5167 5420 145618 53 2 1 16 1 0 43 1 0 16 3 0 7 18 9 12 27 22 24 1 0 19 3 2 13 1 0 16 chain 10570 chr16 90354753 + 65511255 65511389 L1PA8 5853 + 5709 5841 157953 31 3 2 18 1 0 81 chain 12177 chr16 90354753 + 65512428 65512579 L1PA8 5853 + 5704 5853 151508 36 2 1 19 1 0 93 chain 29766 chr16 90354753 + 65520006 65520320 AluYb9 318 - 4 318 85588 314 chain 23070 chr16 90354753 + 65530920 65531250 L1PA8 5853 + 5504 5842 115294 58 1 0 46 2 0 70 18 31 31 2 1 19 1 0 82 chain 45616 chr16 90354753 + 65546922 65547531 LTR66 600 - 0 600 62385 46 0 2 74 22 4 61 0 6 180 1 0 4 3 4 53 0 1 165 chain 15452 chr16 90354753 + 65570403 65570746 L1PB1 5432 - 19 333 140048 9 1 0 13 5 4 17 1 0 24 2 0 11 49 35 4 1 0 15 1 0 44 1 0 16 2 1 11 0 2 40 2 0 8 16 12 9 1 0 24 1 0 15 chain 556478 chr16 90354753 + 65585030 65591172 L1PA3long 6157 + 4 6154 674 191 0 4 2498 1 0 570 0 5 443 4 0 137 0 3 1671 0 1 627 chain 36933 chr16 90354753 + 65597870 65598354 L1PA8 5853 - 0 476 73609 48 1 0 44 2 1 16 1 0 56 1 0 6 1 0 72 2 0 46 1 0 187 chain 5436 chr16 90354753 + 65677941 65678017 MER53 195 + 11 94 190646 56 1 8 19 chain 3396 chr16 90354753 + 65683263 65683354 MER53 195 + 114 195 217144 40 37 27 14 chain 556916 chr16 90354753 + 65723914 65729923 L1HS 6032 + 13 6032 616 1308 3 12 3901 0 1 797 chain 4014 chr16 90354753 + 65734551 65734615 MLT1H1 527 + 323 377 207183 10 6 0 5 4 0 39 chain 9033 chr16 90354753 + 65737992 65738201 THE1B 368 + 155 366 165425 13 3 2 15 43 48 8 1 0 65 17 16 44 chain 20332 chr16 90354753 + 65745400 65745731 THE1B 368 + 0 334 126133 78 1 0 29 17 18 44 1 0 21 0 2 9 0 1 12 13 16 12 1 0 64 7 6 22 chain 8856 chr16 90354753 + 65761581 65761709 MER85 139 - 0 139 166344 40 0 10 30 4 5 54 chain 6713 chr16 90354753 + 65762509 65762580 L1PA4 6152 + 6065 6136 179587 71 chain 3198 chr16 90354753 + 65792118 65792153 MER5A1 166 + 81 116 220982 35 chain 39100 chr16 90354753 + 65798835 65799338 MER41B 635 + 0 503 70600 128 0 1 231 4 3 140 chain 16268 chr16 90354753 + 65799354 65799543 L1PA7 6471 - 8 197 137552 189 chain 39916 chr16 90354753 + 65804788 65805335 MER61E 571 + 0 559 69438 86 0 13 297 3 0 5 5 8 108 16 15 27 chain 5538 chr16 90354753 + 65835314 65835377 L1PB2 3958 + 3775 3838 189678 63 chain 31392 chr16 90354753 + 65836589 65836955 L1PA2 6032 + 5675 6030 81830 302 12 1 52 chain 80054 chr16 90354753 + 65847058 65847955 MER11D 897 + 0 897 43563 67 0 1 4 1 0 825 chain 7499 chr16 90354753 + 65848927 65849102 L1PB1 5432 - 5 158 174164 5 2 0 8 0 1 9 1 0 13 1 0 21 1 0 24 2 0 15 7 4 19 16 6 6 2 0 16 1 0 6 chain 21794 chr16 90354753 + 65885891 65886288 MSTA 426 - 2 426 121036 69 1 0 38 1 21 46 15 12 9 0 9 13 15 5 43 27 34 12 12 17 96 chain 32788 chr16 90354753 + 65893350 65893819 MLT2A1 477 - 0 467 79552 62 24 0 12 0 19 161 21 19 32 0 4 25 0 1 132 chain 3454 chr16 90354753 + 65905520 65905562 MER63B 433 - 329 371 216120 42 chain 367431 chr16 90354753 + 65961113 65965462 L1PA6 6164 + 0 6159 11171 88 0 511 51 0 4 583 0 1 509 0 1301 117 5 4 15 5 6 38 2 1 828 0 1 4 1 0 258 0 1 765 6 0 186 0 1 880 2 0 6 chain 14301 chr16 90354753 + 66005777 66006054 L1PB1 5432 + 5174 5427 143559 20 0 1 25 2 1 10 6 5 45 1 0 15 1 0 4 2 0 7 10 1 19 2 0 5 1 0 14 9 7 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 31466 chr16 90354753 + 66071600 66072122 MLT2A2 560 - 0 560 81703 41 5 1 105 3 14 60 0 32 34 1 0 41 83 83 149 chain 30960 chr16 90354753 + 66085539 66085978 MLT2A1 477 - 4 477 82588 29 30 64 175 0 1 24 14 12 9 0 1 158 chain 46885 chr16 90354753 + 66087814 66088479 MER4A 717 + 0 687 61320 117 19 6 61 0 2 7 0 1 60 10 33 112 0 1 57 0 9 19 7 5 7 2 0 48 0 4 97 1 0 41 chain 14789 chr16 90354753 + 66114927 66115280 THE1D 372 - 10 372 141971 124 74 89 25 54 56 13 9 0 29 1 0 9 0 2 15 chain 8397 chr16 90354753 + 66133953 66134069 L1MB1 2102 + 1892 2006 168869 50 2 0 64 chain 4134 chr16 90354753 + 66234181 66234454 L1MB7 1623 + 1388 1593 205445 31 209 141 33 chain 11165 chr16 90354753 + 66237937 66238112 MER30 238 - 0 191 155571 41 3 0 65 21 39 25 0 1 20 chain 12942 chr16 90354753 + 66244420 66244599 L1PA8 5853 - 9 184 148462 84 1 0 19 2 1 52 2 1 8 1 0 10 chain 16793 chr16 90354753 + 66268451 66269124 MLT1A0 366 + 2 366 136131 21 1 0 24 63 66 44 336 14 5 0 1 128 21 31 30 chain 6704 chr16 90354753 + 66294077 66294203 L1MA3 4352 - 0 117 179654 21 3 0 3 1 0 11 4 3 26 1 0 5 2 1 24 2 0 23 chain 22329 chr16 90354753 + 66314697 66315109 L1PA16 3655 + 1022 1425 118783 55 121 112 236 chain 5584 chr16 90354753 + 66317142 66317206 L1P4 1494 + 1116 1180 189232 64 chain 17403 chr16 90354753 + 66318412 66318781 THE1B 368 - 0 368 134496 56 7 6 64 13 14 14 109 108 106 chain 6043 chr16 90354753 + 66324822 66324974 L1MA4 2864 + 2307 2457 184865 13 17 14 41 38 39 43 chain 8143 chr16 90354753 + 66335711 66335801 5S 121 + 0 90 170268 90 chain 4911 chr16 90354753 + 66373152 66373210 MSTB 430 + 17 75 196145 58 chain 2898 chr16 90354753 + 66399798 66399837 MIR 256 - 112 230 227056 30 0 79 9 chain 16261 chr16 90354753 + 66408700 66408886 L1PA5 6144 - 1 184 137578 12 3 0 171 chain 12625 chr16 90354753 + 66427213 66427573 MSTA 426 - 0 424 149748 16 1 7 50 21 54 28 57 76 39 66 71 55 1 2 26 chain 13200 chr16 90354753 + 66523512 66523691 MER83B 357 - 36 207 147466 59 13 5 107 chain 545098 chr16 90354753 + 66529885 66536018 L1PA4 6152 + 0 6141 2063 1415 1 6 31 0 5 680 0 10 535 0 1 494 1 0 127 1 0 985 15 0 59 0 4 142 0 1 806 1 0 34 0 1 48 1 0 757 chain 29313 chr16 90354753 + 66538379 66538690 AluYa5 310 + 0 310 87484 132 1 0 178 chain 93639 chr16 90354753 + 66548026 66549085 SVA_B 1603 + 0 1603 38461 19 0 25 456 0 1 2 0 514 155 0 4 427 chain 7154 chr16 90354753 + 66564523 66564995 MER5A 189 - 32 183 176377 38 371 50 63 chain 8095 chr16 90354753 + 66565722 66565918 L1PA16 3655 + 3457 3619 170517 60 13 0 11 8 13 37 39 18 7 5 0 16 chain 5253 chr16 90354753 + 66584407 66584468 HY1 111 + 50 111 192482 61 chain 35373 chr16 90354753 + 66601062 66601481 L1PA7 6471 - 1 421 75702 157 5 6 257 chain 22794 chr16 90354753 + 66658392 66658677 AluSz 310 + 5 289 116609 271 2 1 12 chain 86789 chr16 90354753 + 66661631 66662639 LTR5B 1012 - 0 1012 40857 33 0 1 137 0 2 83 2 1 652 0 2 89 0 1 7 1 0 4 chain 141032 chr16 90354753 + 66664212 66665833 SVA_D 2077 + 0 2062 25980 13 2 1 17 0 6 178 0 1 223 0 40 63 0 40 306 2 271 28 0 1 30 0 2 9 0 79 32 0 1 47 0 1 55 0 1 4 0 1 612 chain 4908 chr16 90354753 + 66672359 66672429 L1MA8 2339 + 2129 2196 196178 33 4 1 33 chain 3723 chr16 90354753 + 66705982 66706028 MADE1 96 - 1 47 211587 46 chain 5010 chr16 90354753 + 66743214 66743279 L1MC4 1079 + 226 293 195020 7 0 2 58 chain 19871 chr16 90354753 + 66759108 66759375 AluSq2 311 + 9 280 127590 67 6 5 149 7 12 38 chain 6823 chr16 90354753 + 66799205 66799321 MER119 576 - 69 199 178774 18 13 25 5 1 0 74 0 3 5 chain 30558 chr16 90354753 + 66799755 66800073 AluYb8 318 - 0 318 83317 318 chain 25248 chr16 90354753 + 66859078 66859366 AluY 311 + 10 299 103483 116 0 1 172 chain 189763 chr16 90354753 + 66871484 66874272 L1PB1 5432 + 2969 5389 20077 237 323 0 40 0 2 475 25 14 889 3 0 477 7 4 7 1 0 24 1 0 9 27 20 53 2 1 16 1 0 44 1 0 6 33 21 15 12 9 12 2 0 26 1 0 19 chain 21772 chr16 90354753 + 66910139 66910743 THE1D 372 - 0 372 121124 33 0 1 114 304 70 49 8 9 96 chain 18317 chr16 90354753 + 66910355 66910590 AluY 311 + 61 299 132030 71 0 1 143 4 6 17 chain 30323 chr16 90354753 + 66930518 66930945 LTR7B 505 + 0 495 83856 108 0 10 57 0 38 12 3 27 26 0 2 85 1 0 30 4 0 46 14 13 41 chain 24969 chr16 90354753 + 66931203 66931636 LTR7B 505 - 2 505 104965 18 2 0 31 27 25 30 0 1 39 1 0 24 25 113 27 35 11 69 0 10 105 chain 2874 chr16 90354753 + 66980195 66980225 MLT1A0 366 - 102 132 227469 30 chain 87182 chr16 90354753 + 66989277 66990306 LTR5B 1012 - 0 1012 40698 523 1 0 124 3 1 226 14 0 138 chain 3887 chr16 90354753 + 66994799 66994849 MSTB 430 - 381 430 209055 33 1 0 16 chain 100193 chr16 90354753 + 67008000 67009289 LTR12C 1709 + 0 1709 36720 263 1 0 4 0 2 14 0 9 46 0 43 83 3 0 5 0 2 179 0 278 182 1 0 7 3 1 99 18 11 73 2 1 138 0 1 15 0 101 70 6 5 77 chain 23800 chr16 90354753 + 67029934 67030232 AluSc 308 - 3 303 111478 26 0 1 103 1 2 168 chain 3790 chr16 90354753 + 67076465 67076509 MLT1F 544 - 115 159 210522 44 chain 8009 chr16 90354753 + 67084283 67084413 MER44B 551 - 64 185 170995 22 7 6 9 8 0 84 chain 29836 chr16 90354753 + 67114893 67115237 L1PA3long 6157 - 12 354 85331 5 1 0 249 1 0 88 chain 10568 chr16 90354753 + 67115237 67115353 L1PA3long 6157 + 5666 5782 157965 116 chain 4372 chr16 90354753 + 67118423 67118501 L1MB2 1706 + 1593 1671 202290 5 1 0 13 1 0 8 1 0 10 3 6 36 chain 24405 chr16 90354753 + 67125647 67126183 L1PA8 5853 - 0 346 108051 93 163 0 19 2 1 51 2 1 9 23 1 62 10 8 44 1 0 57 chain 12835 chr16 90354753 + 67153286 67153801 MER30B 195 - 6 190 148906 109 350 19 56 chain 21068 chr16 90354753 + 67158515 67158821 AluY 311 + 11 299 123669 42 24 4 74 3 4 140 5 6 18 chain 4322 chr16 90354753 + 67347354 67347404 MER58B 340 - 226 276 202941 50 chain 4017 chr16 90354753 + 67351042 67351092 MER33 330 + 9 59 207116 50 chain 19346 chr16 90354753 + 67355658 67355890 7SK 245 - 13 245 129084 232 chain 85380 chr16 90354753 + 67368641 67369623 MER11C 1089 - 16 1089 41387 472 0 1 188 1 0 266 0 91 55 chain 29401 chr16 90354753 + 67389266 67389576 AluYa5 310 - 0 310 87068 310 chain 25631 chr16 90354753 + 67403467 67403828 THE1B 368 - 0 368 101576 125 5 4 7 1 0 18 1 5 8 0 3 29 1 0 27 0 4 7 2 1 130 chain 30049 chr16 90354753 + 67524481 67524904 LOR1b 457 + 0 439 84647 29 1 11 182 1 0 14 23 27 119 0 3 54 chain 9595 chr16 90354753 + 67548572 67548693 LOR1a 498 + 112 233 162619 121 chain 25034 chr16 90354753 + 67612568 67612856 AluSq10 312 + 0 288 104622 288 chain 3504 chr16 90354753 + 67643151 67643257 L1MA8 2339 - 74 177 215292 9 1 0 15 49 47 32 chain 3047 chr16 90354753 + 67710353 67710385 MLT2D 439 + 399 431 224075 32 chain 12634 chr16 90354753 + 67737768 67738066 L1MB3 1562 - 137 434 149713 4 1 0 25 13 15 30 38 37 55 3 1 57 41 42 31 chain 3413 chr16 90354753 + 67738312 67738351 MIRb 242 - 99 138 216876 39 chain 60390 chr16 90354753 + 67746216 67746860 SVA_E 1901 + 0 642 52637 153 2 0 489 chain 25493 chr16 90354753 + 67770069 67770363 AluSp 311 - 17 311 102256 294 chain 24685 chr16 90354753 + 67779785 67780073 AluSp 311 + 8 296 106517 288 chain 21908 chr16 90354753 + 67782151 67782441 AluSq 315 + 11 299 120593 123 2 1 74 4 3 87 chain 8845 chr16 90354753 + 67806846 67806948 MSTB-int 1649 + 1541 1643 166403 102 chain 14325 chr16 90354753 + 67885409 67885600 L1PA5 6144 - 2 188 143476 7 4 0 64 3 2 113 chain 22241 chr16 90354753 + 67890090 67890382 AluSg7 307 - 12 297 119165 9 10 0 11 0 2 134 7 8 121 chain 41370 chr16 90354753 + 67923969 67924775 LTR15 485 - 5 485 67441 41 4 0 169 322 0 270 chain 13540 chr16 90354753 + 67925807 67925986 AluSq2 311 + 119 296 146212 60 1 0 80 1 2 24 2 0 11 chain 20016 chr16 90354753 + 67955208 67955510 AluSc8 310 + 11 307 127096 15 0 1 105 11 14 74 0 1 7 15 8 48 4 0 23 chain 28827 chr16 90354753 + 67972574 67972877 AluYb8 318 - 15 318 89776 303 chain 93500 chr16 90354753 + 68015996 68017350 LTR12C 1709 + 0 1709 38509 278 5 14 5 0 1 40 0 43 82 0 1 186 0 278 143 0 47 90 24 0 7 20 13 138 23 27 89 52 56 89 1 0 82 chain 118788 chr16 90354753 + 68031935 68033362 LTR12C 1709 + 0 1709 31495 266 0 1 152 2 1 267 0 279 146 1 0 5 3 1 106 0 4 357 4 6 118 chain 8097 chr16 90354753 + 68051614 68051719 U6 107 - 2 106 170501 41 1 0 63 chain 20074 chr16 90354753 + 68052089 68052348 LTR8 732 - 433 690 126900 56 1 0 80 0 6 5 7 0 110 chain 9688 chr16 90354753 + 68064080 68064210 MER65D 500 + 0 138 162164 40 0 10 83 2 0 5 chain 6804 chr16 90354753 + 68089696 68089776 MADE1 96 + 0 96 178925 29 0 16 51 chain 4918 chr16 90354753 + 68123357 68123414 HY4 93 - 4 61 196069 57 chain 3302 chr16 90354753 + 68124114 68124155 MIRb 242 + 169 211 218929 36 0 1 5 chain 9248 chr16 90354753 + 68132504 68132730 L1ME1 1623 - 347 580 164318 68 40 50 39 46 43 33 chain 238425 chr16 90354753 + 68142413 68146171 L1PA10 4194 - 33 3257 16855 13 1 0 32 3 0 168 0 2 237 0 3 166 1 0 753 0 1 86 0 3 13 0 36 11 619 4 10 4 1 10 3 2 88 0 1 291 1 5 108 0 2 6 7 31 8 0 1 79 0 1 141 5 6 21 1 0 4 0 1 55 6 5 103 0 2 5 2 0 336 0 1 20 0 2 89 0 1 5 6 10 222 8 12 11 chain 13241 chr16 90354753 + 68146542 68146688 AluYb8 318 - 2 146 147318 5 2 0 139 chain 24210 chr16 90354753 + 68148479 68148767 AluSc5 308 - 12 300 109154 288 chain 3361 chr16 90354753 + 68171262 68171324 Tigger3b 1229 - 1121 1184 217872 32 12 13 18 chain 21615 chr16 90354753 + 68181930 68182209 AluSp 311 - 29 302 121708 22 7 2 78 7 6 165 chain 21350 chr16 90354753 + 68189952 68190223 AluSq10 312 + 15 288 122687 30 2 8 111 4 0 124 chain 151885 chr16 90354753 + 68196652 68198333 SVA_D 2077 - 4 2065 24354 202 3 0 129 4 14 186 0 225 259 5 142 747 0 11 146 chain 61230 chr16 90354753 + 68214417 68215123 L1PA5 6144 - 12 714 52243 177 1 0 10 1 0 3 2 0 512 chain 21266 chr16 90354753 + 68276164 68276446 MER4E1 777 - 416 713 122976 30 0 4 36 0 3 94 1 0 7 0 5 14 0 4 100 chain 20189 chr16 90354753 + 68307678 68307962 AluSc5 308 - 13 308 126566 21 21 29 76 1 4 165 chain 62753 chr16 90354753 + 68312209 68312904 SVA_C 1631 - 4 691 51558 148 11 2 473 0 1 63 chain 5557 chr16 90354753 + 68318156 68318221 U6 107 - 42 107 189497 65 chain 32950 chr16 90354753 + 68354144 68354619 MER9a3 513 - 0 513 79293 79 24 26 97 3 17 19 0 17 80 0 1 5 4 5 56 0 1 22 1 0 28 0 1 39 0 2 18 chain 9695 chr16 90354753 + 68363572 68363692 AluY 311 + 82 203 162104 50 0 1 70 chain 6545 chr16 90354753 + 68424587 68424683 MER41B 635 - 538 635 180891 72 5 6 19 chain 43367 chr16 90354753 + 68531546 68532358 MER41A 554 - 7 554 64971 97 0 1 2 280 0 286 0 3 32 0 11 115 chain 35574 chr16 90354753 + 68557550 68558012 LTR12F 595 - 1 594 75444 179 1 11 12 4 0 125 0 130 32 7 2 102 chain 29712 chr16 90354753 + 68561070 68561453 LTR12C 1709 + 769 1198 85787 68 1 0 15 1 0 81 0 1 137 0 47 80 chain 3780 chr16 90354753 + 68561577 68561618 LTR12C 1709 + 677 718 210663 41 chain 22622 chr16 90354753 + 68567084 68567362 AluYc3 301 - 18 299 117480 116 0 4 36 1 0 12 1 2 38 2 1 72 chain 22018 chr16 90354753 + 68572343 68572626 AluSp 311 + 0 299 120147 54 0 21 73 6 1 150 chain 26548 chr16 90354753 + 68582380 68582681 AluSp 311 - 0 300 97847 27 1 0 273 chain 565705 chr16 90354753 + 68617379 68623408 L1HS 6032 - 0 6032 175 1950 0 2 887 4 5 3188 chain 25234 chr16 90354753 + 68642772 68643073 AluY 311 + 10 306 103567 113 10 5 178 chain 23023 chr16 90354753 + 68652463 68652740 AluSp 311 + 5 289 115519 121 10 17 146 chain 21692 chr16 90354753 + 68654683 68654956 MER4E1 777 + 18 291 121423 273 chain 24092 chr16 90354753 + 68659930 68660221 AluY 311 + 5 303 109781 39 1 7 81 0 1 170 chain 4865 chr16 90354753 + 68673495 68673596 L1MB3 1562 - 341 441 196631 20 34 33 47 chain 13703 chr16 90354753 + 68697722 68697875 L1PA3long 6157 - 0 154 145593 7 0 1 146 chain 15771 chr16 90354753 + 68705941 68706107 AluYf4 310 + 128 294 139051 166 chain 2856 chr16 90354753 + 68724870 68724900 MER41A 554 + 400 430 227753 30 chain 23460 chr16 90354753 + 68724914 68725206 AluSc 308 - 14 308 113313 20 6 8 266 chain 9254 chr16 90354753 + 68744264 68744424 MER20 218 + 1 161 164293 19 14 13 40 13 14 74 chain 24092 chr16 90354753 + 68752859 68753177 AluSx 319 + 0 309 109785 15 4 0 117 0 1 58 1 0 70 5 3 40 3 0 5 chain 8070 chr16 90354753 + 68776381 68776476 5S 121 + 2 91 170647 70 6 0 19 chain 21455 chr16 90354753 + 68782014 68782298 AluSp 311 - 11 301 122311 205 12 18 67 chain 9209 chr16 90354753 + 68793122 68793229 AluJo 314 + 4 111 164511 107 chain 18800 chr16 90354753 + 68813476 68813739 AluSc 308 + 0 264 130678 51 9 6 127 10 14 66 chain 12865 chr16 90354753 + 68818453 68818690 L1PB1 5432 - 42 252 148777 20 1 0 20 25 8 10 0 6 29 14 1 16 1 0 8 0 1 35 1 0 17 1 0 39 chain 25135 chr16 90354753 + 68857891 68858199 AluSp 311 - 3 311 104093 308 chain 25099 chr16 90354753 + 68880796 68881092 AluSp 311 - 15 311 104296 296 chain 21958 chr16 90354753 + 68899547 68899836 AluY 311 + 0 298 120391 16 0 17 100 19 11 154 chain 29022 chr16 90354753 + 68900244 68900548 AluYb8 318 + 0 304 88895 304 chain 7616 chr16 90354753 + 68919388 68919481 L1MB8 1703 - 119 212 173433 93 chain 6480 chr16 90354753 + 68959845 68959934 L1MC 810 - 57 145 181387 23 1 0 65 chain 3461 chr16 90354753 + 68960820 68960859 U7 62 - 22 61 215980 39 chain 3221 chr16 90354753 + 68971572 68971728 L1MB7 1623 - 84 217 220553 5 0 2 12 30 29 13 1 0 21 50 28 6 1 0 17 chain 44906 chr16 90354753 + 69031711 69032335 MER41-int 2638 - 2 652 63167 181 20 23 162 0 3 20 6 24 127 3 4 77 0 1 28 chain 8200 chr16 90354753 + 69038018 69038193 LOR1-int 1871 - 1485 1648 169954 26 4 0 13 36 31 30 2 1 21 2 0 41 chain 4989 chr16 90354753 + 69042151 69042212 L1MB8 1703 - 884 945 195253 61 chain 22590 chr16 90354753 + 69052545 69052818 AluY 311 + 1 288 117628 41 0 1 82 8 4 58 0 17 84 chain 10624 chr16 90354753 + 69062622 69062753 FLAM_A 137 - 5 136 157714 131 chain 4487 chr16 90354753 + 69084827 69084903 L1MB7 1623 - 519 599 200929 52 1 0 9 3 8 11 chain 24701 chr16 90354753 + 69095638 69095941 AluY 311 + 0 301 106429 11 2 0 121 0 1 112 1 0 56 chain 20506 chr16 90354753 + 69103709 69104649 MER41C 542 - 7 308 125612 11 5 4 96 318 0 86 1 3 19 328 6 76 chain 21299 chr16 90354753 + 69112957 69113235 AluSp 311 + 11 287 122866 109 5 0 118 1 2 35 0 2 10 chain 26704 chr16 90354753 + 69127424 69127732 AluSp 311 - 3 311 97307 308 chain 22115 chr16 90354753 + 69169650 69169946 AluSp 311 + 8 296 119724 14 4 0 110 8 5 4 1 0 155 chain 14910 chr16 90354753 + 69175743 69175903 L1PA3long 6157 - 0 160 141606 160 chain 24682 chr16 90354753 + 69180618 69180931 AluY 311 + 1 306 106537 117 7 0 14 0 1 96 3 4 68 3 0 5 chain 38493 chr16 90354753 + 69206608 69207443 MER41A 554 + 0 554 71447 100 10 12 257 312 0 21 5 9 13 0 20 37 2 7 78 chain 9580 chr16 90354753 + 69209573 69209680 U6 107 - 0 107 162695 107 chain 7980 chr16 90354753 + 69225026 69225124 HY3 101 + 1 100 171167 55 1 2 42 chain 23002 chr16 90354753 + 69240322 69240618 AluSp 311 + 0 301 115608 48 12 22 213 5 0 18 chain 22605 chr16 90354753 + 69265219 69265496 AluSp 311 + 10 286 117571 114 1 0 162 chain 57870 chr16 90354753 + 69280070 69280722 L1P1 4361 - 323 975 54051 652 chain 22408 chr16 90354753 + 69280722 69280959 L1PA2 6032 + 5790 6027 118451 237 chain 27463 chr16 90354753 + 69284884 69285180 AluYa5 310 - 14 310 94772 296 chain 22472 chr16 90354753 + 69289819 69290098 AluSq4 311 + 11 292 118147 120 1 2 126 3 4 29 chain 2856 chr16 90354753 + 69312853 69312883 U6 107 + 0 30 227729 30 chain 70847 chr16 90354753 + 69313789 69314569 SVA_D 2077 - 24 804 47991 658 1 0 6 0 1 115 chain 6538 chr16 90354753 + 69347462 69347568 MER58B 340 + 76 195 180944 10 1 0 11 1 0 8 3 18 72 chain 22922 chr16 90354753 + 69355860 69356151 THE1A 353 - 12 308 116006 146 0 3 50 0 3 29 2 1 64 chain 22866 chr16 90354753 + 69365068 69365380 AluSp 311 + 0 306 116254 49 9 4 54 7 5 5 0 2 59 1 0 128 chain 4809 chr16 90354753 + 69392814 69392913 Tigger3c 601 - 129 247 197250 18 5 8 22 14 29 15 0 1 25 chain 16806 chr16 90354753 + 69394015 69394265 AluSz 310 + 8 260 136099 104 1 3 28 13 13 30 5 5 69 chain 5843 chr16 90354753 + 69398749 69398930 MER58A 224 - 15 207 186747 25 94 104 44 0 1 18 chain 27063 chr16 90354753 + 69420113 69420423 AluSp 311 + 0 309 96065 18 1 0 291 chain 21041 chr16 90354753 + 69434959 69435208 L1PA4 6152 + 5893 6152 123760 103 0 7 10 2 0 128 0 5 6 chain 20543 chr16 90354753 + 69437414 69437685 AluSq2 311 + 44 311 125496 89 0 1 128 5 6 13 6 0 30 chain 5675 chr16 90354753 + 69472443 69473127 L1MB4 1306 - 438 1007 188336 10 1 0 15 267 175 60 302 280 29 chain 22853 chr16 90354753 + 69479594 69479871 AluSp 311 + 10 294 116318 72 0 9 16 2 0 187 chain 23210 chr16 90354753 + 69507699 69508073 THE1B 368 - 0 368 114644 38 1 2 26 0 2 6 1 0 46 0 1 14 3 0 40 30 24 51 6 7 63 0 1 34 2 0 13 chain 191839 chr16 90354753 + 69550151 69552346 L1PA5 6144 + 3935 6144 19876 237 0 1 4 1 0 647 0 14 19 0 1 436 2 0 497 1 0 339 1 3 11 chain 22030 chr16 90354753 + 69554150 69554421 AluSp 311 + 10 303 120107 163 1 23 107 chain 24578 chr16 90354753 + 69559829 69560122 AluSp 311 - 18 310 107092 67 0 1 97 2 0 127 chain 2912 chr16 90354753 + 69572921 69572957 MER3 215 + 161 198 226826 4 0 1 32 chain 9755 chr16 90354753 + 69585881 69586007 MER85 139 + 0 139 161826 54 0 3 32 0 10 40 chain 18559 chr16 90354753 + 69588788 69589133 THE1B 368 - 0 368 131333 56 7 6 42 72 95 52 11 12 105 chain 14794 chr16 90354753 + 69611916 69612104 MER2 342 + 88 278 141947 23 1 0 70 0 3 94 chain 28435 chr16 90354753 + 69639608 69639915 AluYb8 318 - 11 318 91444 307 chain 16960 chr16 90354753 + 69667394 69667683 L1MA5A 2387 + 2053 2306 135700 16 1 0 39 1 0 6 0 5 36 2 0 32 1 0 25 11 4 14 28 0 66 1 0 10 chain 25597 chr16 90354753 + 69669427 69669749 THE1A 353 - 7 353 101745 236 2 1 14 7 32 63 chain 124408 chr16 90354753 + 69669754 69671318 THE1A-int 1579 - 5 1579 29570 73 1 0 32 1 0 444 10 11 99 0 2 151 2 0 202 3 0 268 0 3 72 0 9 191 0 2 15 chain 16582 chr16 90354753 + 69671318 69671531 THE1A 353 - 0 214 136708 57 8 9 148 chain 3669 chr16 90354753 + 69671609 69671672 THE1A 353 - 292 353 212425 43 9 7 11 chain 24450 chr16 90354753 + 69691392 69691680 AluSg7 307 + 11 299 107807 288 chain 197524 chr16 90354753 + 69699087 69701233 L1PA3long 6157 + 4010 6154 19387 1366 3 2 762 1 0 14 chain 4087 chr16 90354753 + 69702440 69702569 Tigger4 2445 - 37 160 206125 9 2 0 4 5 0 16 11 24 29 31 19 22 chain 22716 chr16 90354753 + 69713745 69714030 AluY 311 + 10 292 117005 21 4 0 77 1 2 182 chain 29362 chr16 90354753 + 69721815 69722129 AluYb8 318 + 0 312 87234 132 2 0 180 chain 21507 chr16 90354753 + 69764593 69765278 MLT2A2 560 + 0 480 122120 111 1 0 57 12 10 15 355 39 70 2 111 43 1 6 18 chain 6708 chr16 90354753 + 69814939 69815023 HY4 93 + 0 84 179623 84 chain 25602 chr16 90354753 + 69847064 69847364 AluSp 311 - 11 311 101715 300 chain 24456 chr16 90354753 + 69881306 69881610 AluSp 311 - 8 311 107772 14 2 0 111 0 1 177 chain 23452 chr16 90354753 + 69895981 69896267 AluSp 311 - 25 311 113373 286 chain 16618 chr16 90354753 + 69926094 69926313 L1PA7 6471 - 1 215 136618 31 9 7 124 3 0 52 chain 9044 chr16 90354753 + 69939379 69939537 Tigger4a 237 + 55 213 165356 36 23 27 56 4 0 39 chain 3535 chr16 90354753 + 69943837 69943934 MER58A 224 + 46 143 214794 37 45 45 15 chain 29406 chr16 90354753 + 70000180 70000567 MER41A 554 + 0 426 87038 119 15 52 15 2 0 222 0 4 14 chain 24414 chr16 90354753 + 70017020 70017321 AluSp 311 + 5 306 108006 301 chain 20748 chr16 90354753 + 70036040 70036318 AluSp 311 + 9 285 124793 28 23 22 52 2 1 173 chain 43653 chr16 90354753 + 70037919 70038767 MER41A 554 + 13 553 64628 52 0 1 367 309 0 120 chain 133298 chr16 90354753 + 70041080 70042588 L1PA5 6144 + 4622 6128 27370 672 1 0 89 1 0 745 chain 249450 chr16 90354753 + 70078634 70081463 L1PA4 6152 + 3290 6152 16286 625 0 1 519 0 22 844 0 3 113 0 1 122 5 8 586 2 0 7 0 5 6 chain 170121 chr16 90354753 + 70084257 70086865 SVA_E 1901 + 0 1899 22036 153 1 0 492 0 40 132 1 0 19 1 0 87 53 0 48 653 0 124 1 0 21 41 0 18 1 0 82 0 3 680 chain 4669 chr16 90354753 + 70085143 70085196 SVA_E 1901 + 1221 1274 143048 53 chain 2285 chr16 90354753 + 70085244 70085280 SVA_E 1901 + 1096 1133 170034 3 0 1 33 chain 33609 chr16 90354753 + 70085311 70085753 SVA_F 1814 + 664 1291 78227 65 0 233 119 0 1 88 0 1 26 49 0 77 1 0 17 chain 1798 chr16 90354753 + 70085609 70085649 SVA_F 1814 + 908 948 112557 40 chain 5710 chr16 90354753 + 70085753 70085880 SVA_F 1814 + 989 1116 112557 127 chain 23127 chr16 90354753 + 70089355 70089646 AluY 311 + 0 307 115009 53 9 25 23 1 0 31 0 1 174 chain 30336 chr16 90354753 + 70119765 70120082 AluYb8 318 - 1 318 83826 317 chain 22306 chr16 90354753 + 70138317 70138587 AluY 311 + 10 298 118887 26 0 18 244 chain 4397 chr16 90354753 + 70171304 70171407 L1MB3 1562 + 1323 1425 201968 28 8 7 14 19 20 29 1 0 4 chain 29537 chr16 90354753 + 70223093 70223480 MER41A 554 + 0 426 86494 119 15 52 15 2 0 222 0 4 14 chain 160971 chr16 90354753 + 70237803 70239875 SVA_F 1814 + 10 1814 23199 886 5 6 28 3 4 14 204 14 175 79 1 32 1 0 11 2 0 617 0 1 15 chain 5567 chr16 90354753 + 70238739 70238843 SVA_F 1814 + 1012 1116 108646 104 chain 1606 chr16 90354753 + 70239118 70239148 SVA_F 1814 + 1264 1293 108646 10 4 3 16 chain 2972 chr16 90354753 + 70239148 70239197 SVA_F 1814 + 1040 1089 125624 49 chain 41379 chr16 90354753 + 70241071 70241918 MER41A 554 + 13 553 67432 50 5 6 358 314 6 120 chain 130883 chr16 90354753 + 70244113 70245609 L1PA5 6144 + 4622 6132 27889 677 0 3 479 0 10 198 0 1 142 chain 28028 chr16 90354753 + 70246226 70246680 LTR7B 505 + 0 491 92901 25 8 0 13 1 2 50 0 3 12 0 10 60 0 38 12 34 27 26 0 2 85 1 0 76 14 13 37 chain 29501 chr16 90354753 + 70246871 70247310 LTR7B 505 + 9 496 86634 96 0 10 69 6 13 28 0 25 6 1 0 22 0 2 42 0 1 11 10 15 16 1 0 23 0 1 52 14 13 42 chain 115170 chr16 90354753 + 70258097 70259429 SVA_D 2077 - 5 2077 32725 131 0 20 379 0 225 128 0 466 57 0 3 13 0 40 227 0 4 343 12 1 16 9 2 17 chain 5746 chr16 90354753 + 70271908 70271974 Tigger4a 237 - 166 232 187682 66 chain 23401 chr16 90354753 + 70293681 70293963 AluSp 311 - 17 300 113639 12 4 5 266 chain 25077 chr16 90354753 + 70305154 70305451 AluSp 311 + 5 302 104423 297 chain 24060 chr16 90354753 + 70321669 70321967 AluSp 311 - 15 311 109982 57 8 6 233 chain 29841 chr16 90354753 + 70327500 70327813 AluYb8 318 - 5 318 85311 313 chain 3369 chr16 90354753 + 70335205 70335247 HAL1 992 - 505 547 217692 42 chain 26403 chr16 90354753 + 70354863 70355164 AluSp 311 - 10 311 98396 301 chain 26093 chr16 90354753 + 70381581 70381892 AluSp 311 - 16 311 99651 9 16 0 286 chain 5127 chr16 90354753 + 70385840 70385934 MLT1C 463 - 320 423 193811 18 1 2 16 12 17 38 0 3 9 chain 23468 chr16 90354753 + 70410651 70410934 AluSg7 307 - 15 298 113277 283 chain 21929 chr16 90354753 + 70429873 70430148 AluSp 311 - 11 287 120504 242 2 3 31 chain 21483 chr16 90354753 + 70437447 70437715 AluSc5 308 + 13 281 122206 117 1 0 90 1 2 59 chain 23322 chr16 90354753 + 70475083 70475389 AluSg7 307 + 0 291 114081 79 18 3 209 chain 9176 chr16 90354753 + 70479198 70479302 U6 107 - 3 107 164672 104 chain 3523 chr16 90354753 + 70480719 70480829 LTR16A1 462 + 261 372 215024 27 54 55 29 chain 110577 chr16 90354753 + 70483834 70485263 LTR12C 1709 - 0 1709 34061 129 0 2 124 24 23 149 5 6 48 0 4 106 3 1 5 1 0 98 0 278 135 1 0 130 8 7 199 1 2 263 chain 28034 chr16 90354753 + 70537496 70537796 AluYk12 309 - 9 309 92876 300 chain 28752 chr16 90354753 + 70553019 70553329 AluYb8 318 - 9 318 90111 100 1 0 209 chain 23832 chr16 90354753 + 70565927 70566206 AluSp 311 + 11 295 111298 23 0 3 226 0 2 30 chain 23783 chr16 90354753 + 70637192 70637480 AluSp 311 - 22 311 111576 188 0 1 100 chain 14251 chr16 90354753 + 70650426 70650818 LTR7 482 - 36 482 143714 69 194 239 23 8 17 98 chain 289274 chr16 90354753 + 70652076 70659915 HERVH-int 3825 - 0 3825 14067 487 8 218 25 1 4 43 0 9 393 0 2 172 0 6 29 0 1 720 4 31 400 0 3 273 0 1 92 0 3 132 0 3 13 0 2 7 0 1 58 5 4 13 4288 0 24 1 0 25 3 0 13 1 14 24 1 0 10 1 0 38 5 0 26 1 3 503 chain 41870 chr16 90354753 + 70654974 70655511 HERVH-int 3825 - 3219 3825 66805 26 1 0 10 1 0 25 0 56 267 0 11 45 8 10 28 5 7 121 chain 40390 chr16 90354753 + 70655513 70655965 LTR7 482 - 0 482 68755 187 0 31 38 0 1 173 2 0 52 chain 37897 chr16 90354753 + 70656395 70656877 HERVH-int 3825 - 0 487 72290 225 3 8 225 3 9 5 6 0 15 chain 110351 chr16 90354753 + 70657025 70658271 HERVH-int 3825 - 849 2109 34108 678 0 1 160 0 3 113 0 10 295 chain 80008 chr16 90354753 + 70658284 70659229 HERVH-int 3825 - 2148 3095 43589 831 0 3 64 2 1 48 chain 9213 chr16 90354753 + 70659915 70660022 LTR7Y 441 - 0 107 164490 107 chain 12854 chr16 90354753 + 70664775 70664936 L1MA3 4352 - 486 651 148820 14 0 4 147 chain 4103 chr16 90354753 + 70673980 70674032 Tigger3b 1229 - 976 1028 205907 52 chain 55779 chr16 90354753 + 70776755 70777592 LTR12 884 + 0 869 55258 25 9 8 70 36 0 62 0 4 119 63 1 27 3 28 34 2 0 171 2 106 214 chain 4151 chr16 90354753 + 70777076 70777139 LTR12 884 + 222 264 150927 12 34 13 17 chain 2854 chr16 90354753 + 70777088 70777122 LTR12 884 + 172 206 163981 34 chain 5020 chr16 90354753 + 70812131 70812184 tRNA-Gly-GGY 63 - 10 63 194935 53 chain 5143 chr16 90354753 + 70812953 70813012 tRNA-Gly-GGY 63 - 5 63 193636 4 1 0 54 chain 4202 chr16 90354753 + 70822596 70822643 tRNA-Gly-GGY 63 + 0 47 204520 47 chain 5143 chr16 90354753 + 70823409 70823468 tRNA-Gly-GGY 63 + 0 58 193632 54 1 0 4 chain 8448 chr16 90354753 + 70832546 70832676 MER5A1 166 - 1 137 168578 79 17 23 34 chain 21079 chr16 90354753 + 70868947 70869187 AluSg7 307 - 56 296 123623 240 chain 3129 chr16 90354753 + 70872611 70872672 MIRb 242 + 119 179 222363 20 14 13 27 chain 380606 chr16 90354753 + 70876960 70881057 L1PA2 6032 - 16 4117 10734 1786 0 4 2311 chain 62974 chr16 90354753 + 70903659 70904516 THE1B-int 1605 + 0 893 51458 17 4 0 7 2 3 156 0 3 27 8 11 76 5 6 126 0 25 41 0 5 191 1 3 9 2 1 176 0 1 9 chain 4838 chr16 90354753 + 70907639 70907734 MER5A1 166 - 32 132 196910 10 1 2 31 20 24 33 chain 22824 chr16 90354753 + 70911919 70912261 THE1B 368 + 0 353 116477 169 1 0 29 0 3 8 20 24 7 1 0 53 13 19 41 chain 414963 chr16 90354753 + 70944014 70949472 L1PB1 5432 - 12 5400 9669 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 15 9 1 15 3 0 16 1 0 43 1 0 16 4 8 42 19 13 11 1 0 11 1 0 20 7 0 9 1 4 138 21 14 102 14 11 19 35 18 173 3 0 665 0 1 4 5 6 113 0 2 105 1 0 118 0 2 32 4 5 503 2 6 13 25 1 38 1 0 172 1 0 222 1 2 22 1 0 96 6 0 224 0 9 334 0 1 190 0 1 115 5 6 18 0 6 109 0 1 81 11 0 233 22 22 77 14 16 649 0 2 5 12 10 245 0 1 113 chain 8306 chr16 90354753 + 70959233 70959323 L1PA3long 6157 - 1202 1292 168348 90 chain 110172 chr16 90354753 + 70959323 70960524 L1PA3long 6157 + 4956 6157 34166 1201 chain 72205 chr16 90354753 + 70980768 70981544 L1PA3long 6157 - 1826 2602 47092 776 chain 166943 chr16 90354753 + 70981544 70983371 L1PA3long 6157 + 4330 6157 22403 1827 chain 30322 chr16 90354753 + 71019669 71020016 L1PA5 6144 + 5795 6141 83859 31 0 1 64 1 0 98 1 0 152 chain 40243 chr16 90354753 + 71030690 71031194 MER1A 529 - 0 498 68956 63 13 7 428 chain 21729 chr16 90354753 + 71057239 71057532 L1PA8 5853 - 0 287 121283 93 1 0 19 2 1 51 1 0 10 2 1 70 2 0 42 chain 8797 chr16 90354753 + 71084475 71084608 L1MC1 2226 - 179 308 166659 55 3 1 8 4 2 63 chain 87556 chr16 90354753 + 71091563 71092503 L1PA2 6032 + 5082 6026 40547 100 0 4 840 chain 36897 chr16 90354753 + 71140790 71141203 L1PA4 6152 + 5723 6143 73664 283 0 7 130 chain 30026 chr16 90354753 + 71164373 71164690 AluYb8 318 - 2 318 84726 198 1 0 118 chain 22706 chr16 90354753 + 71179160 71179435 AluSc5 308 - 13 298 117048 255 0 10 20 chain 11119 chr16 90354753 + 71186285 71186508 L1PB1 5432 - 10 210 155737 6 1 0 12 1 0 13 1 0 21 1 0 24 2 0 14 9 6 18 19 8 4 1 0 15 1 0 44 1 0 15 chain 41424 chr16 90354753 + 71230473 71231009 MER41A 554 + 10 547 67388 76 6 7 86 2 1 217 1 0 4 0 1 28 0 1 116 chain 47299 chr16 90354753 + 71233741 71234297 MER41A 554 + 0 554 60967 360 1 0 9 1 0 185 chain 135722 chr16 90354753 + 71256014 71257983 L1PB2 3958 + 1844 3838 26894 128 0 1 255 0 1 38 0 3 210 26 17 46 0 1 4 1 0 94 2 1 5 0 19 257 1 0 58 5 6 48 38 37 72 5 3 16 0 1 142 2 0 54 1 0 13 11 0 21 7 8 36 2 0 12 2 0 11 10 13 70 1 0 72 1 0 14 0 33 17 2 1 71 2 0 21 2 1 63 chain 29399 chr16 90354753 + 71258456 71258763 AluYa5 310 - 3 310 87083 307 chain 3852 chr16 90354753 + 71260432 71260491 L1ME1 1623 + 783 848 209612 18 0 7 23 1 0 17 chain 175412 chr16 90354753 + 71261254 71263202 L1PA5 6144 + 4169 6127 21407 317 0 4 809 0 4 160 0 3 12 1 0 649 chain 46395 chr16 90354753 + 71329189 71329705 L1PA4 6152 + 5631 6152 61692 510 0 5 6 chain 313048 chr16 90354753 + 71338375 71341921 L1PA5 6144 - 0 3543 12889 196 11 0 598 0 1 48 0 4 51 0 1 62 0 3 62 2 1 2361 0 1 101 1 0 53 chain 82924 chr16 90354753 + 71341922 71342855 L1PA5 6144 + 1668 2602 42368 363 0 1 570 chain 6781 chr16 90354753 + 71356478 71356749 AluJb 308 + 163 276 179095 27 159 0 42 9 10 34 chain 28444 chr16 90354753 + 71366511 71366855 L1PA10 4194 + 3811 4150 91403 271 5 3 31 3 0 34 chain 22840 chr16 90354753 + 71414201 71414500 AluSp 311 - 0 301 116393 46 0 2 110 0 3 8 11 8 124 chain 36705 chr16 90354753 + 71438078 71438598 LTR10G 522 + 0 522 73953 38 1 0 47 5 8 30 2 3 226 0 1 95 4 1 14 18 19 40 chain 28891 chr16 90354753 + 71439374 71439683 AluYa5 310 + 1 310 89492 309 chain 5062 chr16 90354753 + 71460395 71460450 tRNA-Met 55 + 0 55 194519 55 chain 31625 chr16 90354753 + 71532004 71532403 MSTA 426 + 7 406 81439 399 chain 5476 chr16 90354753 + 71537839 71537937 L1PA15 4387 + 4276 4366 190249 37 2 0 13 8 3 26 1 0 11 chain 232159 chr16 90354753 + 71542416 71545210 L1P2 5180 - 2359 5178 17190 307 0 1 304 0 2 299 8 0 732 0 8 7 0 3 200 0 25 139 9 7 272 1 0 7 1 0 261 1 0 97 1 0 148 chain 59645 chr16 90354753 + 71545844 71546614 MER4E1 777 - 9 777 53026 8 1 0 213 14 9 172 1 0 105 0 2 191 10 12 31 2 0 5 0 3 17 chain 16636 chr16 90354753 + 71561172 71561365 MER4E1 777 - 0 193 136569 193 chain 22056 chr16 90354753 + 71585757 71586030 AluSc 308 + 19 290 119991 259 3 1 11 chain 17075 chr16 90354753 + 71593253 71593488 MSTA-int 1630 + 0 237 135394 13 5 4 95 1 4 121 chain 77260 chr16 90354753 + 71595547 71596626 MER11A 1151 - 4 1151 44847 29 0 1 32 1 0 87 8 7 98 1 33 16 0 28 69 0 4 37 3 4 11 13 24 123 0 12 204 37 0 23 0 11 66 1 0 141 0 8 79 chain 3512 chr16 90354753 + 71597372 71597413 U6 107 - 48 89 215176 41 chain 127498 chr16 90354753 + 71622730 71624155 SVA_D 2077 + 23 2066 28690 542 0 40 156 0 40 56 1 0 63 1 539 56 0 1 550 chain 293103 chr16 90354753 + 71628887 71633473 L1PB1 5432 + 1450 5424 13817 30 10 0 19 1 0 38 0 4 128 0 7 148 311 55 334 5 6 39 5 9 91 320 0 17 0 4 116 9 0 43 0 2 278 2 0 6 8 11 252 1 0 115 1 0 170 0 1 365 11 0 99 0 2 17 3 6 100 2 1 224 0 1 178 14 15 5 1 0 74 17 18 148 4 0 453 0 4 20 1 2 9 4 0 24 1 0 5 21 15 9 2 0 53 2 1 16 1 0 44 1 0 15 3 0 7 54 43 24 2 1 20 1 0 13 1 0 16 1 0 4 chain 137256 chr16 90354753 + 71636726 71638192 L1PA2 6032 - 0 1467 26597 341 0 1 1125 chain 128308 chr16 90354753 + 71638192 71639589 L1PA2 6032 + 3179 4576 28423 1397 chain 4382 chr16 90354753 + 71644030 71644091 LTR49 580 + 495 557 202166 36 0 1 4 0 1 4 1 0 16 chain 4265 chr16 90354753 + 71673284 71673337 L1MD2 1676 - 251 304 203685 53 chain 7469 chr16 90354753 + 71699993 71700085 U6 107 + 0 92 174347 92 chain 5396 chr16 90354753 + 71737153 71737246 Charlie1a 1436 - 43 117 191031 8 19 0 66 chain 28600 chr16 90354753 + 71740849 71741157 AluYf4 310 - 3 310 90732 181 1 0 126 chain 27310 chr16 90354753 + 71753867 71754171 AluYf4 310 - 6 310 95246 304 chain 24975 chr16 90354753 + 71779918 71780212 AluSc 308 - 16 308 104933 161 2 0 131 chain 3822 chr16 90354753 + 71818151 71818194 MIR 256 - 116 159 210046 43 chain 21173 chr16 90354753 + 71853573 71853833 AluSc8 310 + 11 275 123294 20 0 1 100 0 3 140 chain 31953 chr16 90354753 + 71867800 71868213 MLT2A1 477 + 0 464 80932 28 0 5 107 0 1 28 0 4 219 4 46 19 1 0 7 chain 3106 chr16 90354753 + 71878780 71878815 MADE1 96 - 61 96 222811 35 chain 23480 chr16 90354753 + 71955770 71956053 AluY 311 + 12 293 113215 120 0 1 82 3 0 78 chain 8195 chr16 90354753 + 71987600 71987760 THE1D 372 - 213 372 169980 27 11 15 39 28 23 55 chain 9481 chr16 90354753 + 72027467 72027593 MER85 139 + 0 138 163157 42 0 1 53 0 13 7 2 0 22 chain 30194 chr16 90354753 + 72043120 72043434 AluYb8 318 + 0 314 84213 314 chain 32409 chr16 90354753 + 72068172 72068581 MER51B 395 + 0 395 80190 39 13 0 206 1 0 150 chain 25073 chr16 90354753 + 72074869 72075242 THE1C 375 - 0 375 104445 26 1 0 100 6 5 36 3 4 9 12 10 46 0 4 17 10 11 107 chain 29834 chr16 90354753 + 72079821 72080267 MER4A1 472 - 0 472 85338 70 7 9 22 7 10 106 12 31 193 1 0 6 10 13 12 chain 20242 chr16 90354753 + 72119628 72119917 AluY 311 + 6 299 126404 31 1 2 77 0 1 15 0 1 42 11 11 79 5 6 28 chain 8309 chr16 90354753 + 72150126 72150228 L1PA16 3655 - 1016 1118 169349 102 chain 315650 chr16 90354753 + 72178686 72182431 L1PA7 6471 + 2713 6469 12780 624 0 1 123 1 2 372 3 4 147 0 5 441 3 4 358 0 1 819 0 3 452 12 13 373 3 0 14 chain 3293 chr16 90354753 + 72188834 72188872 LTR86A2 456 + 30 68 219132 38 chain 15906 chr16 90354753 + 72197609 72197932 L1PB1 5432 + 5105 5397 138636 9 3 0 23 1 0 9 1 0 12 5 1 9 2 0 52 18 16 37 12 11 12 22 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 6 chain 6033 chr16 90354753 + 72203462 72203529 L1PA7 6471 + 6398 6465 184945 67 chain 7952 chr16 90354753 + 72311231 72311330 L1PA8 5853 + 5749 5847 171316 11 1 0 87 chain 2362 chr16 90354753 + 72333785 72333812 MER115 684 - 66 93 234686 27 chain 28215 chr16 90354753 + 72338572 72338926 THE1B 368 - 0 368 92251 196 1 0 113 0 15 44 chain 15968 chr16 90354753 + 72339181 72339453 L1MA5A 2387 - 82 329 138462 9 1 0 66 18 0 13 3 0 36 1 0 26 2 0 42 6 5 44 0 1 5 chain 436879 chr16 90354753 + 72358291 72363464 L1P2 5180 + 3 5178 9133 147 1 0 32 1 2 10 1 0 41 0 2 10 14 13 20 2 1 233 0 1 48 1 0 224 1 0 6 1 0 354 0 1 1700 1 0 110 7 8 694 0 1 778 0 1 650 1 0 46 1 0 17 0 5 16 1 0 4 chain 72569 chr16 90354753 + 72363727 72364577 L1PA6 6164 + 5311 6162 47234 4 0 1 327 0 1 356 1 0 162 chain 380622 chr16 90354753 + 72375899 72380045 L1PA2 6032 + 1881 6028 10733 3993 0 1 153 chain 121553 chr16 90354753 + 72386337 72387704 L1PA5 6144 + 4777 6144 30519 600 1 0 624 0 1 142 chain 7951 chr16 90354753 + 72417903 72417996 L1PA4 6152 + 6057 6152 171322 87 0 2 6 chain 20384 chr16 90354753 + 72437121 72438983 THE1B 368 - 0 368 125949 56 7 6 64 71 58 6 0 2 59 1483 0 4 0 1 112 chain 8218 chr16 90354753 + 72437393 72437491 THE1B 368 - 261 359 169840 98 chain 3972 chr16 90354753 + 72438808 72438862 THE1B 368 - 194 247 207809 5 1 0 48 chain 19794 chr16 90354753 + 72473785 72474115 Tigger1 2417 - 0 333 127840 52 31 30 49 2 0 23 14 19 17 4 5 138 chain 30089 chr16 90354753 + 72479042 72479419 L1PA7 6471 - 4 390 84531 8 3 0 166 3 7 5 1 0 19 0 9 172 chain 68245 chr16 90354753 + 72530711 72531437 SVA_E 1901 + 1177 1901 49141 717 2 0 7 chain 339256 chr16 90354753 + 72559209 72563097 L1PA5 6144 - 2 3913 11917 14 1 5 127 7 3 107 0 1 73 1 2 509 0 4 354 0 1 364 0 1 85 0 1 143 0 4 68 0 1 186 0 1 413 1 0 172 1 0 212 1 3 371 0 1 492 0 3 40 0 4 146 chain 57132 chr16 90354753 + 72569566 72570230 L1PA5 6144 + 5461 6128 54442 4 0 1 344 1 2 175 0 1 140 chain 533603 chr16 90354753 + 72577107 72583581 L1PA7 6471 + 0 6464 3753 411 4 5 258 7 8 27 7 9 184 1 4 448 12 12 91 32 1 1182 0 1 69 0 1 626 2 0 147 1 2 7 1 0 10 3 0 46 0 4 23 0 3 43 0 1 319 0 4 66 0 2 471 0 1 317 0 2 150 1 0 19 0 1 141 1 0 32 1 4 83 0 3 46 3 0 19 1 0 50 0 1 268 2 0 842 chain 7719 chr16 90354753 + 72597110 72597252 LTR54 533 + 344 503 172801 17 1 5 66 1 15 15 20 19 22 chain 91918 chr16 90354753 + 72604468 72605481 L1PA3long 6157 + 5142 6157 38993 1008 0 2 5 chain 9847 chr16 90354753 + 72614554 72614684 AluSg 306 + 6 135 161354 96 9 8 25 chain 538922 chr16 90354753 + 72614697 72620831 L1PA4 6152 + 11 6143 3003 43 6 9 372 21 15 542 0 3 1218 4 0 3260 2 1 26 0 1 223 0 1 313 0 1 104 chain 28998 chr16 90354753 + 72635225 72635532 AluYb8 318 - 11 318 88994 307 chain 29086 chr16 90354753 + 72651927 72652232 AluYa5 310 - 5 310 88611 305 chain 555365 chr16 90354753 + 72661173 72667197 L1PA2 6032 + 0 6026 783 749 0 1 939 0 1 4176 1 6 6 5 0 148 chain 386499 chr16 90354753 + 72725934 72730423 L1PA4 6152 - 12 6150 10562 838 0 1 672 1 0 341 0 2 535 0 1 796 0 1 105 23 1662 41 0 1 185 0 4 690 0 1 262 chain 27939 chr16 90354753 + 72753297 72753596 AluYa5 310 - 14 310 93207 170 3 0 126 chain 2989 chr16 90354753 + 72754425 72754464 MER3 215 - 128 178 225236 32 0 11 7 chain 269379 chr16 90354753 + 72766014 72769848 L1PA10 4194 - 33 3944 15213 11 1 0 34 3 0 30 11 4 23 4 0 328 1 0 190 0 2 84 1 0 4 8 4 183 0 1 4 10 190 5 3 0 376 8 12 12 13 8 6 0 2 12 46 44 366 0 4 291 1 0 109 26 2 88 0 14 69 0 2 72 0 1 103 1 0 37 49 1 231 0 12 180 0 19 28 16 6 191 1 4 272 11 9 78 1 0 8 10 0 15 1 0 9 14 8 7 1 0 21 78 49 14 3 1 21 chain 4271 chr16 90354753 + 72789345 72789416 MLT1F2-int 1139 - 630 700 203619 32 11 10 28 chain 60311 chr16 90354753 + 72805828 72806579 LTR12 884 + 0 869 52677 24 1 0 91 0 25 60 0 2 30 0 1 22 0 91 32 2 0 362 6 8 121 chain 9309 chr16 90354753 + 72865743 72865872 MER85 139 + 1 139 164022 95 5 14 29 chain 23753 chr16 90354753 + 73001535 73001841 AluY 311 + 2 298 111754 124 11 0 148 7 8 16 chain 4273 chr16 90354753 + 73012752 73012801 MIRb 242 - 4 53 203566 49 chain 22318 chr16 90354753 + 73078541 73078809 AluSp 311 - 33 301 118837 268 chain 5124 chr16 90354753 + 73114280 73114344 MLT1A 405 + 315 379 193839 64 chain 33327 chr16 90354753 + 73159293 73159776 MLT2A1 477 + 0 469 78692 168 5 2 9 0 1 21 0 3 6 5 4 183 6 0 18 2 0 9 22 16 29 chain 21197 chr16 90354753 + 73228112 73228387 AluJb 308 - 22 297 123222 134 0 3 6 8 5 127 chain 15102 chr16 90354753 + 73298504 73298851 L1PB1 5432 - 11 325 141023 17 1 0 12 3 2 20 1 0 23 3 1 11 46 33 6 3 0 16 1 0 44 14 16 53 2 0 8 5 1 12 1 0 8 1 0 24 5 0 7 chain 40095 chr16 90354753 + 73312290 73312846 LTR12F 595 - 0 595 69191 82 2 1 7 0 1 266 19 61 33 1 3 36 7 2 103 chain 6641 chr16 90354753 + 73512216 73512288 tRNA-Lys-AAA 73 - 1 73 180161 72 chain 28662 chr16 90354753 + 73519995 73520402 MER51B 395 + 0 395 90481 14 0 1 25 13 0 205 1 0 56 0 1 34 4 3 17 8 9 30 chain 25075 chr16 90354753 + 73533850 73534193 Tigger3b 1229 + 184 532 104433 67 1 2 32 7 11 36 1 0 190 0 1 9 chain 24640 chr16 90354753 + 73556612 73556993 THE1C 375 - 0 375 106787 25 1 0 128 0 2 5 2 0 17 23 19 109 13 12 58 chain 43645 chr16 90354753 + 73591226 73591760 MER41A 554 - 0 541 64636 80 0 5 70 1 2 193 0 1 190 chain 25516 chr16 90354753 + 73656938 73657234 AluYk4 311 - 18 311 102160 13 3 0 280 chain 28424 chr16 90354753 + 73702206 73702545 L1PA7 6471 - 1 340 91492 339 chain 5142 chr16 90354753 + 73712643 73712707 UCON12 82 + 0 64 193647 64 chain 25565 chr16 90354753 + 73722585 73722944 THE1B 368 + 0 368 101906 169 1 0 20 44 54 125 chain 28565 chr16 90354753 + 73741335 73741649 L1PA4 6152 + 5837 6151 90897 314 chain 24138 chr16 90354753 + 73749462 73749759 AluSg7 307 - 0 296 109533 181 1 0 115 chain 115542 chr16 90354753 + 73793807 73795449 L1PA10 4194 + 2547 4150 32597 80 1 2 27 5 1 15 10 14 89 0 7 318 27 0 20 23 7 26 0 7 209 1 2 29 0 1 11 21 18 140 1 0 38 8 1 237 4 3 92 1 7 52 6 1 105 0 1 9 3 0 34 chain 7981 chr16 90354753 + 73823882 73823972 MER131 149 + 25 115 171166 90 chain 560895 chr16 90354753 + 73858299 73864330 L1PA2 6032 - 0 6032 316 1104 0 1 4927 chain 24646 chr16 90354753 + 73867370 73867661 L1PA7 6471 + 6178 6465 106745 13 1 0 268 3 0 6 chain 20847 chr16 90354753 + 73896839 73897108 AluSx3 311 + 10 286 124474 62 0 6 50 1 2 156 chain 21564 chr16 90354753 + 73934893 73935191 AluSg7 307 - 7 297 121909 16 9 0 141 11 12 121 chain 37215 chr16 90354753 + 73937554 73938082 L1PB1 5432 - 593 1124 73217 68 5 11 52 8 5 63 16 13 18 8 12 242 1 0 47 chain 37113 chr16 90354753 + 73938086 73938678 L1PB1 5432 + 4860 5420 73359 243 1 0 35 1 0 9 16 11 11 3 1 52 1 0 15 8 7 37 1 0 15 3 0 14 9 0 17 24 19 24 1 0 21 1 0 13 1 0 16 chain 7411 chr16 90354753 + 73966723 73966870 L1PA15 4387 + 4218 4355 174698 38 21 18 34 7 5 16 5 0 26 chain 98651 chr16 90354753 + 73968040 73969440 L1PA11 4918 + 3171 4567 37111 44 0 4 117 1 0 107 2 0 217 1 0 28 1 2 5 2 0 115 1 6 133 0 4 261 7 12 84 0 4 17 2 0 64 3 5 6 3 0 14 1 0 55 22 19 14 4 0 9 8 3 10 13 9 10 6 5 13 chain 15755 chr16 90354753 + 73978452 73978660 L1PA8 5853 + 5648 5853 139093 31 1 0 14 1 0 66 2 1 93 chain 56109 chr16 90354753 + 73993964 73994639 L1PA7 6471 + 5772 6459 55068 135 0 10 263 0 1 194 0 1 83 chain 7605 chr16 90354753 + 74011486 74011573 MER50 708 + 74 161 173511 87 chain 21805 chr16 90354753 + 74011935 74012216 AluSp 311 + 26 299 121000 58 0 1 205 9 0 9 chain 9812 chr16 90354753 + 74013296 74013424 MER85 139 + 0 139 161535 8 0 1 80 0 10 40 chain 22758 chr16 90354753 + 74055811 74056117 AluY 311 + 11 301 116787 15 1 0 105 3 0 19 3 1 140 10 0 10 chain 25574 chr16 90354753 + 74115662 74115971 AluSz6 309 - 0 309 101852 309 chain 18594 chr16 90354753 + 74120876 74121133 L1MA8 2339 - 1456 1715 131244 80 2 0 125 6 10 44 chain 46634 chr16 90354753 + 74131865 74132749 MER41A 554 + 0 554 61512 428 330 0 126 chain 27302 chr16 90354753 + 74136620 74136983 THE1C 375 - 11 375 95270 15 1 0 29 0 1 130 1 0 8 0 1 158 8 9 13 chain 33777 chr16 90354753 + 74148212 74148654 MLT2A1 477 + 0 477 77976 168 5 2 9 0 1 23 0 1 181 4 0 12 3 43 37 chain 17232 chr16 90354753 + 74153468 74153656 AluYk12 309 + 121 309 134975 188 chain 27147 chr16 90354753 + 74155702 74156060 MLT2A1 477 - 122 477 95772 185 9 6 55 1 0 37 2 3 69 chain 6256 chr16 90354753 + 74167408 74167777 MLT2A1 477 + 0 367 81736 169 4 1 9 0 1 23 0 1 39 7 6 118 chain 123961 chr16 90354753 + 74167781 74169153 L1PA5 6144 + 4762 6134 29712 1372 chain 1187 chr16 90354753 + 74169193 74169263 MLT2A1 477 + 367 477 81736 30 3 43 37 chain 43323 chr16 90354753 + 74182321 74182794 L1PA2 6032 - 1 474 65006 473 chain 14524 chr16 90354753 + 74183433 74183754 THE1D 372 + 0 332 142812 37 48 42 6 0 1 4 1 0 48 0 1 27 63 79 87 chain 12546 chr16 90354753 + 74191245 74191382 L1PA5 6144 + 5852 5989 150056 137 chain 13752 chr16 90354753 + 74191382 74191536 L1PA5 6144 + 5990 6144 145429 154 chain 48495 chr16 90354753 + 74201639 74202273 L1PA8 5853 - 6 636 60113 80 8 7 19 2 1 37 0 3 8 17 13 50 0 2 17 2 0 46 1 0 347 chain 3650 chr16 90354753 + 74217926 74217976 MADE1 96 - 1 51 212792 36 1 0 4 0 1 9 chain 12806 chr16 90354753 + 74275001 74275183 MER30 238 - 11 201 149032 37 3 0 52 2 0 15 4 0 8 0 17 61 chain 29880 chr16 90354753 + 74289431 74289747 AluYb8 318 + 1 317 85166 316 chain 6196 chr16 90354753 + 74311833 74311911 LTR51 675 - 598 675 183610 7 1 0 70 chain 3360 chr16 90354753 + 74313268 74313492 LTR8A 794 - 24 241 217877 13 15 28 23 40 37 12 69 62 8 4 0 16 5 0 13 1 0 5 chain 39213 chr16 90354753 + 74313885 74314405 MER41C 542 + 0 542 70441 42 6 8 261 10 31 10 1 0 190 chain 10129 chr16 90354753 + 74318711 74318967 MSTA 426 - 20 278 159947 37 1 2 42 22 28 16 60 61 14 11 5 53 chain 4074 chr16 90354753 + 74377565 74377660 L1MB3 1562 - 144 239 206273 26 19 20 14 8 7 28 chain 29312 chr16 90354753 + 74439861 74440248 MER41A 554 - 128 554 87505 17 0 4 219 2 0 15 15 52 119 chain 6751 chr16 90354753 + 74465995 74466100 LTR43 600 - 24 131 179313 68 15 17 22 chain 24877 chr16 90354753 + 74525534 74525824 AluYc3 301 - 10 301 105473 59 1 2 230 chain 26851 chr16 90354753 + 74531332 74531634 AluYk4 311 - 9 311 96806 302 chain 7934 chr16 90354753 + 74533326 74533487 Tigger3a 397 + 139 323 171424 17 0 2 5 2 0 17 40 40 72 0 23 8 chain 24232 chr16 90354753 + 74543929 74544217 AluSp 311 - 12 300 109033 288 chain 183324 chr16 90354753 + 74547258 74549465 L1P2 5180 + 687 2914 20647 5 0 1 90 0 15 140 6 0 74 0 11 61 0 3 298 0 2 52 2 1 760 6 8 115 7 0 591 chain 11808 chr16 90354753 + 74549465 74549600 L1PA4 6152 + 6006 6141 152990 135 chain 305221 chr16 90354753 + 74549609 74553393 L1PA7 6471 + 2468 6469 13205 171 1 2 37 7 1 822 2 0 77 0 5 401 7 11 854 0 1 524 6 0 31 6 15 162 2 214 509 3 4 152 2 0 8 chain 30214 chr16 90354753 + 74601448 74601765 AluYb8 318 - 1 318 84151 317 chain 24535 chr16 90354753 + 74645167 74645453 AluSc 308 + 4 290 107337 286 chain 24383 chr16 90354753 + 74647157 74647446 AluSq10 312 - 2 290 108185 203 1 0 85 chain 26128 chr16 90354753 + 74668897 74669210 AluYk4 311 + 1 311 99488 188 0 3 43 6 0 76 chain 18611 chr16 90354753 + 74739428 74739673 L1PA7 6471 - 5 252 131186 32 0 1 117 7 8 89 chain 20152 chr16 90354753 + 74762674 74762902 AluSc 308 - 4 232 126664 228 chain 6540 chr16 90354753 + 74806595 74806705 Tigger7 736 + 8 119 180922 52 16 13 25 0 4 17 chain 2893 chr16 90354753 + 74810980 74811011 MER58A 224 + 45 76 227161 31 chain 75666 chr16 90354753 + 74833301 74834258 LTR5_Hs 974 - 11 974 45681 92 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 21884 chr16 90354753 + 74839586 74840146 L1MA8 2339 - 17 499 120693 23 50 35 7 1 0 9 0 1 14 40 32 38 80 62 8 6 0 88 26 0 47 1 0 23 3 1 6 2 0 88 chain 206169 chr16 90354753 + 74842459 74845135 MER4-int 2692 + 1 2680 18777 10 1 0 25 2 0 20 1 2 41 1 0 7 8 9 450 1 0 51 0 1 231 3 8 63 0 1 53 0 2 66 0 1 32 7 4 354 17 22 130 0 1 105 1 2 172 0 1 140 1 0 90 6 0 35 0 2 130 0 1 15 4 0 7 2 1 104 0 1 264 4 3 22 chain 33120 chr16 90354753 + 74845154 74845588 MER4A1 472 + 0 458 79028 247 7 28 95 9 12 76 chain 30410 chr16 90354753 + 74852590 74853102 L1MA5A 2387 - 104 589 83665 6 0 1 39 32 5 13 8 7 31 2 0 9 0 2 15 2 0 47 1 0 74 0 1 74 40 42 119 chain 13051 chr16 90354753 + 74887587 74887750 L1PA4 6152 - 0 162 148026 5 3 0 106 1 3 48 chain 24440 chr16 90354753 + 74890846 74891152 AluSp 311 + 5 311 107860 306 chain 25465 chr16 90354753 + 74899135 74899428 AluSg4 309 - 6 299 102378 293 chain 4092 chr16 90354753 + 74902802 74902853 MER21C 908 + 521 572 206055 51 chain 24694 chr16 90354753 + 74924742 74925031 AluSx4 309 + 11 301 106469 229 0 1 60 chain 19518 chr16 90354753 + 74941152 74941522 THE1D 372 + 0 372 128598 51 9 0 115 78 84 51 0 1 30 12 16 24 chain 6911 chr16 90354753 + 74944586 74944672 MER85 139 + 0 88 178108 68 0 2 18 chain 42574 chr16 90354753 + 74946477 74946995 MER9a3 513 - 0 513 65935 255 1 0 195 1 5 39 8 0 19 chain 10495 chr16 90354753 + 74946995 74947113 HERVK9-int 4720 - 0 118 158272 118 chain 5665 chr16 90354753 + 74954588 74954658 MER47A 366 + 282 352 188434 70 chain 8041 chr16 90354753 + 74962864 74962973 L1MA3 4352 + 3329 3437 170808 52 1 0 21 0 1 4 1 0 30 chain 48366 chr16 90354753 + 74996132 74996771 L1PA10 4194 - 44 652 60204 34 3 0 26 1 4 4 0 1 447 36 0 19 7 11 62 chain 4294 chr16 90354753 + 75002275 75002324 MLT1E3 631 + 534 583 203318 49 chain 23733 chr16 90354753 + 75013096 75013387 AluY 311 + 0 306 111866 16 0 16 86 1 0 188 chain 12284 chr16 90354753 + 75125740 75125913 Tigger2a 444 - 65 243 151066 104 2 0 18 0 3 7 4 8 38 chain 24907 chr16 90354753 + 75127002 75127300 AluSx1 309 + 2 300 105300 298 chain 25420 chr16 90354753 + 75150852 75151264 MER4D1 891 + 7 409 102592 43 0 1 61 8 9 15 2 1 54 16 0 11 0 2 52 0 5 46 1 0 14 29 28 60 chain 29585 chr16 90354753 + 75152673 75153096 MER4A1 472 + 2 472 86254 12 0 2 6 1 2 9 1 0 62 0 1 129 3 39 132 10 18 58 chain 41048 chr16 90354753 + 75155953 75156499 LTR10A 586 - 13 586 67834 64 31 29 258 0 29 193 chain 151201 chr16 90354753 + 75159532 75163270 MER4-int 2692 + 582 2689 24449 89 3 11 32 329 6 39 588 4 110 23 17 28 0 1 264 12 15 20 32 0 23 9 1 8 377 0 193 0 1 33 1 6 24 6 1 9 0 2 165 1 0 77 1 2 19 1 0 55 4 8 106 1 0 199 7 6 116 0 1 122 7 1 7 315 0 92 0 3 191 chain 32764 chr16 90354753 + 75163305 75163727 MER4A1 472 + 28 472 79591 187 11 33 224 chain 10489 chr16 90354753 + 75163727 75163890 MER50 708 - 74 236 158292 57 1 0 70 14 15 11 1 0 9 chain 4806 chr16 90354753 + 75176899 75176957 MER65C 458 + 400 458 197301 58 chain 17048 chr16 90354753 + 75187921 75188134 AluY 311 + 87 295 135462 36 9 4 168 chain 9560 chr16 90354753 + 75188491 75188606 LTR9B 643 - 82 198 162778 69 0 1 46 chain 5652 chr16 90354753 + 75196625 75196756 L1PA16 3655 - 119 252 188547 24 50 52 57 chain 3305 chr16 90354753 + 75199002 75199173 MER58B 340 + 167 330 218893 35 116 108 20 chain 22332 chr16 90354753 + 75216933 75217676 L1MA8 2339 + 1650 2095 118765 23 18 20 50 6 8 89 4 0 49 9 13 22 11 7 14 363 65 85 chain 11913 chr16 90354753 + 75220966 75221169 LTR8 732 - 16 221 152535 68 2 0 6 18 20 11 0 3 33 10 9 55 chain 6648 chr16 90354753 + 75223738 75223972 MER83C 372 + 0 277 180115 17 137 180 80 chain 5296 chr16 90354753 + 75250715 75250789 L1MB5 1630 - 581 660 192052 59 1 6 14 chain 22121 chr16 90354753 + 75265784 75266036 AluSp 311 - 17 266 119695 162 3 0 87 chain 23688 chr16 90354753 + 75307812 75308106 AluSp 311 - 18 311 112100 9 2 0 156 0 1 127 chain 5131 chr16 90354753 + 75318675 75318745 MER34 540 + 0 71 193771 23 1 2 46 chain 8434 chr16 90354753 + 75350352 75350488 AluJr 308 + 32 305 168654 53 14 152 27 1 0 41 chain 15990 chr16 90354753 + 75355417 75355609 MER107 203 - 0 203 138382 35 0 11 157 chain 4204 chr16 90354753 + 75357736 75357783 Tigger3b 1229 - 1027 1074 204494 47 chain 23890 chr16 90354753 + 75381298 75381585 AluY 311 + 3 291 110956 129 0 1 158 chain 8773 chr16 90354753 + 75386598 75386708 MER47A 366 + 86 196 166803 110 chain 11372 chr16 90354753 + 75398410 75398710 Charlie1b 519 + 138 428 154810 25 84 72 5 0 1 40 1 0 43 2 0 27 6 0 6 19 29 42 chain 12010 chr16 90354753 + 75404317 75404449 L1PA5 6144 + 5996 6128 152152 132 chain 24983 chr16 90354753 + 75427400 75427665 AluYb8 318 + 53 318 104895 265 chain 22711 chr16 90354753 + 75471542 75471806 AluY 311 + 38 302 117027 264 chain 6244 chr16 90354753 + 75508499 75508572 MSTD 398 - 69 142 183216 73 chain 22399 chr16 90354753 + 75534416 75534683 AluSp 311 - 34 301 118484 267 chain 25195 chr16 90354753 + 75551623 75551933 AluSz 310 + 0 308 103763 40 3 0 121 0 1 146 chain 5033 chr16 90354753 + 75553513 75553575 MLT1A1 405 - 40 101 194800 30 1 0 31 chain 43379 chr16 90354753 + 75590421 75591009 LTR66 600 + 0 599 64958 20 1 0 13 1 7 129 0 4 113 9 7 119 8 0 60 2 1 9 0 13 104 chain 21065 chr16 90354753 + 75592686 75592997 MER4B 649 - 337 649 123674 46 0 7 54 6 0 15 2 0 43 1 2 33 1 0 17 0 1 66 1 2 26 chain 4979 chr16 90354753 + 75620427 75620492 MSTA 426 + 360 426 195373 7 0 1 58 chain 22414 chr16 90354753 + 75625688 75625943 L1PA3long 6157 + 5900 6157 118416 250 0 2 5 chain 16351 chr16 90354753 + 75649280 75649527 MER30 238 - 5 238 137340 40 4 1 87 10 0 74 10 9 22 chain 5554 chr16 90354753 + 75651310 75651373 MER5A 189 + 0 63 189528 63 chain 20958 chr16 90354753 + 75655807 75656061 AluSx 319 + 0 296 124071 20 0 44 69 2 0 163 chain 48015 chr16 90354753 + 75666667 75667241 LTR22 571 + 0 571 60474 344 0 1 105 4 0 121 chain 24829 chr16 90354753 + 75697504 75697802 AluY 311 + 5 301 105729 118 6 4 174 chain 93733 chr16 90354753 + 75699020 75700907 L1PBa 3878 + 1160 2456 38427 36 7 8 19 6 5 224 0 2 44 0 1 28 1 0 25 18 19 34 0 12 5 310 0 208 5 6 41 0 1 198 301 0 49 0 2 11 0 1 317 chain 9933 chr16 90354753 + 75711312 75712368 MER49 923 + 62 478 160918 32 851 207 80 44 48 49 chain 22023 chr16 90354753 + 75714268 75714721 LOR1-int 1871 + 90 553 120129 74 49 51 13 18 19 9 6 0 28 0 1 19 0 5 52 47 56 23 2 0 113 chain 39148 chr16 90354753 + 75715479 75716195 L1PB1 5432 - 10 700 70541 21 1 0 9 1 0 22 1 0 9 41 35 17 8 0 13 2 0 12 6 5 43 2 1 13 1 0 53 2 0 10 2 0 3 2 0 12 1 0 9 1 0 20 11 0 12 26 25 62 0 2 41 2 15 78 0 1 147 chain 16620 chr16 90354753 + 75716607 75716860 LTR46-int 301 - 43 292 136612 107 1 0 90 30 27 25 chain 24990 chr16 90354753 + 75723421 75723717 AluY 311 + 11 309 104855 12 0 1 108 0 1 176 chain 5954 chr16 90354753 + 75724933 75725004 LTR9 672 + 45 116 185643 71 chain 30295 chr16 90354753 + 75736770 75737202 LTR7B 505 - 0 505 83946 51 14 13 79 1 0 15 0 1 66 29 0 3 0 93 69 0 10 105 chain 31769 chr16 90354753 + 75739404 75739868 LTR7B 505 - 0 505 81217 51 14 13 79 1 0 82 29 0 27 7 69 68 1 11 105 chain 536110 chr16 90354753 + 75753022 75759184 L1PA4 6152 + 7 6152 3428 118 20 6 12 10 24 1694 0 1 866 1 0 449 1 0 316 0 4 190 0 2 1070 22 0 1393 chain 533053 chr16 90354753 + 75768736 75774848 L1PA4 6152 - 0 6152 3841 6 0 5 1265 1 0 980 0 3 208 1 0 640 0 1 336 0 5 843 0 1 623 2 0 191 0 2 36 1 2 633 13 29 97 0 10 236 chain 33187 chr16 90354753 + 75779174 75779604 MER57A1 433 - 0 432 78920 79 9 10 66 0 1 276 chain 9971 chr16 90354753 + 75795981 75796108 MSTC 436 + 18 146 160716 110 0 1 17 chain 34636 chr16 90354753 + 75798859 75799513 L1PA15 4387 - 21 655 76708 10 1 0 21 30 23 41 7 4 47 8 7 6 4 0 22 1 0 21 68 66 165 1 0 41 12 11 49 1 2 5 0 2 10 2 0 81 chain 4539 chr16 90354753 + 75820418 75820466 MER41B 635 - 106 154 200347 48 chain 81115 chr16 90354753 + 75848902 75850194 LTR5_Hs 974 - 0 974 43131 197 0 19 89 311 6 123 9 10 264 36 0 166 0 3 97 chain 555049 chr16 90354753 + 75855857 75861879 L1PA2 6032 - 4 6025 819 2967 1 0 3054 chain 363400 chr16 90354753 + 75862066 75867104 L1PB1 5432 - 28 5042 11278 12 1 0 22 1 0 26 2 0 12 1 0 5 3 1 18 25 14 12 1 0 45 1 0 16 2 1 52 2 0 9 5 1 14 1 0 10 8 7 13 5 0 7 1 4 113 0 1 183 0 7 470 54 5 28 0 4 304 2 0 255 6 0 13 1 0 108 0 2 611 0 1 99 0 1 20 2 3 33 2 0 6 14 16 195 1 12 102 0 3 5 2 0 11 1 0 141 7 16 395 5 7 177 1 0 75 1 0 4 0 1 52 5 4 7 0 1 43 0 2 104 0 18 22 13 17 10 0 1 240 23 24 375 1 0 162 0 1 126 19 20 57 chain 49029 chr16 90354753 + 75899031 75899591 L1PA5 6144 - 1 561 59727 8 3 0 218 0 2 321 0 1 10 chain 238236 chr16 90354753 + 75907595 75910181 L1PA2 6032 + 3447 6032 16868 2323 1 0 262 chain 48964 chr16 90354753 + 75910651 75911424 L1PB3 3668 - 48 793 59776 8 1 0 13 7 4 26 7 3 37 3 1 25 1 0 18 23 7 87 1 0 101 17 16 192 0 2 61 18 19 13 2 0 112 chain 17388 chr16 90354753 + 75913508 75913737 L1PA8 5853 + 5624 5849 134544 54 12 10 52 2 1 19 1 0 89 chain 30458 chr16 90354753 + 75915568 75915885 AluYb9 318 - 0 317 83518 317 chain 20946 chr16 90354753 + 75978316 75978540 L1PA2 6032 - 2 226 124129 224 chain 36955 chr16 90354753 + 75989698 75990151 L1PA7 6471 + 6003 6457 73575 135 0 1 318 chain 24938 chr16 90354753 + 75994700 75995051 THE1B 368 + 0 368 105121 44 0 15 49 1 2 27 1 5 24 10 6 4 0 1 191 chain 4633 chr16 90354753 + 76000620 76000679 L1PA8 5853 + 5793 5853 199265 54 0 1 5 chain 8946 chr16 90354753 + 76018909 76019006 L1PA5 6144 - 298 395 165888 97 chain 16551 chr16 90354753 + 76019006 76019196 L1PA5 6144 + 5952 6142 136791 190 chain 33120 chr16 90354753 + 76024312 76024694 L1PA4 6152 + 5746 6140 79027 253 0 14 70 2 0 57 chain 68287 chr16 90354753 + 76047673 76048448 L1PA5 6144 - 1 776 49127 775 chain 19889 chr16 90354753 + 76077490 76077725 THE1A 353 + 0 234 127521 109 2 1 124 chain 14432 chr16 90354753 + 76079746 76079928 L1PB3 3668 + 3295 3476 143100 96 1 0 85 chain 8452 chr16 90354753 + 76081709 76081872 L1PA15 4387 - 91 245 168555 20 23 20 39 4 3 6 4 0 23 1 0 43 chain 39289 chr16 90354753 + 76092348 76092916 L1PB3 3668 - 190 759 70341 87 1 0 101 1 0 97 1 4 103 23 24 56 2 3 16 2 0 78 chain 8104 chr16 90354753 + 76103877 76103977 MER4A1 472 + 14 114 170471 10 0 1 52 1 0 37 chain 389698 chr16 90354753 + 76120679 76125069 L1PA4 6152 - 11 4446 10459 248 0 1 422 0 6 156 0 4 526 0 21 1240 0 1 4 1 0 347 1 0 466 3 11 142 0 1 164 0 2 240 0 3 430 chain 26116 chr16 90354753 + 76127275 76127593 L1PA7 6471 + 6150 6469 99546 162 4 5 152 chain 89381 chr16 90354753 + 76138058 76139069 LTR13 1007 + 0 1007 39852 305 1 0 399 3 1 107 1 0 195 chain 33359 chr16 90354753 + 76145116 76145520 L1PA7 6471 - 5 408 78637 7 2 0 321 0 1 74 chain 79068 chr16 90354753 + 76171754 76172772 MER11A 1151 - 0 1151 44022 195 8 10 87 6 40 223 8 10 142 0 1 149 4 0 66 1 0 51 5 104 73 chain 41895 chr16 90354753 + 76192043 76192535 L1PA5 6144 - 1 494 66761 387 16 17 89 chain 21368 chr16 90354753 + 76192536 76192772 L1PA5 6144 + 5423 5659 122622 236 chain 6603 chr16 90354753 + 76201949 76202048 L1P1 4361 - 20 117 180428 12 2 1 23 1 0 61 chain 9176 chr16 90354753 + 76239807 76239920 L1MA8 2339 - 1330 1443 164674 113 chain 22844 chr16 90354753 + 76280934 76281341 L1MA5A 2387 + 1340 1736 116376 26 7 4 11 16 9 59 0 2 5 11 9 70 1 0 20 0 4 6 5 4 53 24 21 93 chain 542110 chr16 90354753 + 76283191 76289361 L1PA5 6144 - 1 6144 2485 140 7 10 72 5 4 1573 0 8 42 1 0 792 1 0 338 5 0 718 15 0 1368 2 1 942 14 0 135 chain 101542 chr16 90354753 + 76332884 76334053 L1PA4 6152 + 4982 6152 36389 73 8 5 238 0 4 699 0 1 129 1 0 21 chain 15761 chr16 90354753 + 76334257 76334444 L1PA7 6471 + 6269 6459 139081 43 0 2 66 0 1 78 chain 22759 chr16 90354753 + 76360354 76360602 L1PA4 6152 + 5650 5898 116784 248 chain 21435 chr16 90354753 + 76360603 76360842 L1PA4 6152 + 5898 6137 122387 239 chain 10082 chr16 90354753 + 76367961 76368073 L1PA4 6152 + 6024 6136 160167 112 chain 5828 chr16 90354753 + 76379899 76379969 MLT1A 405 + 285 355 186876 70 chain 42871 chr16 90354753 + 76402231 76402729 L1PA7 6471 + 5969 6470 65567 167 0 3 312 0 1 14 1 0 4 chain 18931 chr16 90354753 + 76431898 76432274 MLT2A2 560 - 59 560 130288 40 4 19 28 108 218 13 1 0 149 0 1 33 chain 3648 chr16 90354753 + 76452302 76452341 L1PA6 6164 - 5 44 212823 39 chain 217049 chr16 90354753 + 76468137 76470824 HERVL-int 5654 - 2970 5654 18056 34 8 0 6 1 0 196 16 16 1234 0 2 80 2 0 263 0 1 324 0 2 84 0 2 379 4 5 56 chain 27026 chr16 90354753 + 76531405 76531748 L1PA7 6471 + 6123 6468 96198 144 12 14 187 chain 3000 chr16 90354753 + 76532747 76532788 L1MB3 1562 + 1383 1425 225030 13 0 2 23 1 0 4 chain 62698 chr16 90354753 + 76533467 76534169 SVA_B 1603 - 12 710 51593 615 1 0 14 5 1 28 0 1 39 chain 27917 chr16 90354753 + 76535685 76535981 AluYa5 310 + 0 297 93291 96 0 1 200 chain 26273 chr16 90354753 + 76537429 76537722 L1PA5 6144 - 2 295 98924 293 chain 41717 chr16 90354753 + 76549835 76550417 L1PA8 5853 - 0 591 67005 93 1 0 19 2 1 52 2 1 8 3 2 55 14 12 46 1 0 177 0 16 109 chain 25657 chr16 90354753 + 76585832 76586240 THE1D 372 - 0 372 101462 74 3 5 20 0 1 22 44 7 50 0 7 131 9 0 55 chain 17826 chr16 90354753 + 76628829 76629040 L1PA5 6144 - 7 227 133312 58 0 2 70 0 7 83 chain 96595 chr16 90354753 + 76630494 76631604 L1PA4 6152 - 6 1096 37669 133 0 7 8 8 0 704 1 0 49 18 0 189 chain 153555 chr16 90354753 + 76642042 76643749 L1PA3long 6157 - 5 1711 24135 852 1 0 854 chain 164612 chr16 90354753 + 76643749 76645536 L1PA3long 6157 + 2654 4441 22725 1787 chain 10231 chr16 90354753 + 76710232 76710496 LTR8A 794 - 159 414 159466 72 101 92 46 18 18 27 chain 9309 chr16 90354753 + 76713704 76713899 L1PB1 5432 + 5258 5427 164018 22 1 0 16 27 12 14 12 9 15 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 151878 chr16 90354753 + 76726162 76727947 L1PA7 6471 - 1346 3140 24355 164 0 5 469 0 4 1152 chain 104916 chr16 90354753 + 76727947 76729250 L1PA7 6471 + 5135 6470 35481 76 1 0 410 1 3 73 0 3 243 14 41 152 0 2 167 11 11 57 0 1 88 2 0 8 chain 2995 chr16 90354753 + 76742171 76742439 MLT1D 503 + 45 288 225119 21 216 191 31 chain 174803 chr16 90354753 + 76751680 76754431 L1PB1 5432 + 1653 5115 21491 49 0 1052 102 0 1 167 13 12 205 0 1 235 22 14 151 1 2 93 0 6 270 0 1 105 0 7 13 0 1 87 0 1 381 11 16 52 0 14 63 0 23 18 8 0 9 3 11 104 307 0 42 97 18 120 3 0 5 5 1 10 chain 3942 chr16 90354753 + 76754191 76754240 L1PB1 5432 - 468 515 204785 6 2 0 41 chain 100109 chr16 90354753 + 76791240 76792318 L1PA2 6032 - 0 1078 36744 1078 chain 70903 chr16 90354753 + 76792318 76793094 L1PA2 6032 + 4181 4957 47932 776 chain 95973 chr16 90354753 + 76844961 76846144 L1PA4 6152 - 18 1213 37827 37 0 4 201 1 0 198 0 2 16 2 0 148 0 2 116 0 3 5 0 3 39 3 0 5 6 11 90 1 0 315 chain 7946 chr16 90354753 + 76856204 76856306 MER2 342 + 116 218 171347 102 chain 12263 chr16 90354753 + 76908177 76908336 L1PA8 5853 + 5526 5682 151139 36 1 0 45 3 1 74 chain 16283 chr16 90354753 + 76914347 76914548 L1PA5 6144 + 5945 6144 137522 187 3 1 11 chain 19157 chr16 90354753 + 76922934 76923222 L1PA8 5853 + 5577 5853 129658 31 5 3 68 2 0 19 6 0 38 8 7 17 1 0 93 chain 15547 chr16 90354753 + 76930023 76930210 L1PA5 6144 + 5946 6135 139741 41 0 1 124 0 1 22 chain 17528 chr16 90354753 + 76967907 76968129 L1PA8 5853 + 5635 5853 134184 44 1 0 15 1 0 49 1 0 17 1 0 93 chain 54206 chr16 90354753 + 76986598 76987188 L1PA3long 6157 - 1228 1818 56105 590 chain 111138 chr16 90354753 + 76987188 76988420 L1PA3long 6157 + 4926 6157 33901 376 1 0 855 chain 43377 chr16 90354753 + 77011348 77011923 MER41A 554 + 0 554 64962 161 1 0 283 1 0 26 13 11 20 26 9 44 chain 46502 chr16 90354753 + 77012394 77012966 L1PA8 5853 - 0 561 61594 93 1 0 19 2 1 27 4 0 23 1 0 8 1 0 73 2 0 45 1 0 272 chain 4446 chr16 90354753 + 77047243 77047293 MER61E 571 - 521 571 201393 50 chain 9117 chr16 90354753 + 77068736 77068951 L1MA2 4263 - 149 526 164980 10 1 0 4 2 0 11 3 5 23 14 7 66 27 26 4 1 0 36 0 172 13 chain 43438 chr16 90354753 + 77140352 77140864 MER9a3 513 + 0 513 64886 149 0 1 302 0 4 44 4 0 13 chain 50670 chr16 90354753 + 77150190 77150788 L1PA8A 6298 + 5155 5755 58521 333 0 3 155 2 1 108 chain 16954 chr16 90354753 + 77151325 77151521 L1PA7 6471 - 6 200 135718 6 2 0 188 chain 17058 chr16 90354753 + 77186013 77186357 L1PB1 5432 - 5 318 135436 5 2 0 18 1 0 10 4 3 19 1 0 26 2 0 11 18 15 12 20 8 4 1 0 15 1 0 45 1 0 17 1 0 52 0 3 5 19 12 14 1 0 19 chain 30852 chr16 90354753 + 77189510 77189917 L1PA8 5853 + 5450 5853 82768 42 0 2 70 1 0 46 3 1 68 1 0 60 6 5 17 2 1 91 chain 7332 chr16 90354753 + 77208802 77208902 L1PB3 3668 - 525 628 175210 57 1 2 29 0 2 13 chain 25532 chr16 90354753 + 77222944 77223283 MER4A 717 + 0 354 102089 122 0 3 30 7 8 163 0 11 17 chain 2856 chr16 90354753 + 77238391 77238422 MLT1C 463 + 416 447 227738 31 chain 2822 chr16 90354753 + 77285574 77285606 U2 167 + 0 32 228423 32 chain 325702 chr16 90354753 + 77288234 77292049 L1PA6 6164 - 3 3839 12355 7 4 0 143 0 1 470 7 6 218 0 4 12 0 4 452 1 2 373 0 3 94 0 4 66 0 2 603 1 0 3 1 0 446 0 2 56 0 1 4 1 2 126 0 1 204 0 1 358 1 0 44 0 4 120 chain 5532 chr16 90354753 + 77293225 77293372 Tigger4a 237 + 40 176 189740 42 49 51 34 13 0 9 chain 257652 chr16 90354753 + 77299104 77303098 L1PA10 4194 - 44 4018 15834 29 22 19 20 1 0 37 1 0 128 1 8 172 0 1 27 0 3 111 5 11 175 0 3 67 0 2 213 3 0 9 8 8 63 0 1 56 12 13 18 6 5 233 0 7 9 4 0 3 2 0 9 0 1 31 11 2 19 14 6 19 4 2 107 1 2 256 0 2 13 0 4 85 0 1 109 0 2 37 5 10 22 0 6 102 18 19 15 9 8 11 0 2 132 7 14 359 1 5 271 14 24 192 91 81 8 0 9 122 6 0 7 0 6 83 4 2 10 2 0 22 128 115 22 1 0 7 48 22 13 4 2 19 1 0 9 12 9 12 29 20 12 2 0 12 chain 21522 chr16 90354753 + 77313117 77313409 L1PA7 6471 - 2 295 122067 10 2 0 53 4 10 77 3 0 143 chain 67683 chr16 90354753 + 77346568 77347350 L1PA5 6144 + 5356 6143 49371 11 0 5 771 chain 8929 chr16 90354753 + 77361120 77361350 L1PB1 5432 - 28 237 165986 11 4 3 20 1 0 24 16 13 7 2 0 17 28 17 10 1 0 45 7 6 10 2 1 25 chain 45288 chr16 90354753 + 77383061 77383673 PRIMA4_LTR 623 + 0 623 62733 175 0 23 62 1 3 53 2 1 75 21 6 151 1 3 71 chain 6622 chr16 90354753 + 77407412 77407609 L1PB1 5432 + 5257 5427 180289 22 88 66 25 1 0 21 1 0 13 1 0 18 2 0 5 chain 4696 chr16 90354753 + 77434782 77434851 LTR16E1 515 + 420 488 198575 50 8 7 11 chain 3567 chr16 90354753 + 77451562 77451602 L1PA3long 6157 - 59 99 214187 40 chain 55986 chr16 90354753 + 77497418 77498038 L1PA4 6152 - 12 632 55127 620 chain 30437 chr16 90354753 + 77521284 77521658 L1PA7 6471 - 3 369 83552 9 2 0 105 6 0 252 chain 89390 chr16 90354753 + 77539888 77540908 L1PA5 6144 + 5098 6140 39846 239 0 1 120 0 16 59 0 3 24 0 2 419 0 2 5 2 0 152 chain 128963 chr16 90354753 + 77556393 77557835 L1PA3long 6157 + 4727 6156 28319 686 0 1 588 1 0 8 14 1 145 chain 503360 chr16 90354753 + 77558900 77564835 L1PA6 6164 + 29 6147 6649 645 0 10 160 2 3 363 1 2 686 0 1 436 0 1 964 1 0 230 1 0 295 2 6 537 0 4 47 0 1 898 0 4 46 0 1 385 0 1 77 1 0 117 0 157 41 chain 14144 chr16 90354753 + 77581044 77581257 L1PA16 3655 + 3363 3572 144055 17 7 3 98 15 15 76 chain 28387 chr16 90354753 + 77607406 77607812 L1PA8 5853 + 5454 5853 91634 110 1 0 45 2 0 66 23 21 44 2 1 19 1 0 93 chain 3727 chr16 90354753 + 77612325 77612398 MLT1I 406 + 106 180 211516 37 1 0 4 10 12 21 chain 6631 chr16 90354753 + 77641944 77642019 MER2 342 - 131 206 180232 75 chain 27189 chr16 90354753 + 77665721 77666093 THE1B 368 + 0 368 95633 159 1 0 10 16 15 15 2 0 169 chain 3384 chr16 90354753 + 77666206 77666245 MLT1B 390 - 163 202 217396 39 chain 3125 chr16 90354753 + 77693420 77693457 THE1D 372 + 334 372 222452 4 0 1 33 chain 3794 chr16 90354753 + 77694710 77694785 L1MC1 2226 + 1987 2047 210469 6 2 0 41 14 1 12 chain 15098 chr16 90354753 + 77696000 77696226 LTR10E 629 + 4 234 141043 14 0 1 33 12 10 28 7 10 64 0 2 68 chain 9578 chr16 90354753 + 77706548 77706652 L1PA3long 6157 - 60 164 162707 104 chain 3231 chr16 90354753 + 77784098 77784158 LTR16C 481 + 145 206 220408 24 13 14 23 chain 14017 chr16 90354753 + 77806647 77806802 L1PA4 6152 + 5682 5837 144515 155 chain 113106 chr16 90354753 + 77817416 77818839 LTR12C 1709 - 0 1709 33347 481 0 4 106 3 1 5 1 0 101 0 278 264 7 5 65 7 15 116 1 2 266 chain 3985 chr16 90354753 + 77844795 77844841 MADE1 96 - 50 96 207613 46 chain 16381 chr16 90354753 + 77859951 77860124 AluYa5 310 + 129 302 137253 173 chain 38824 chr16 90354753 + 77882651 77883097 L1PA7 6471 + 6024 6470 70984 446 chain 19984 chr16 90354753 + 77889650 77889909 AluSc 308 + 16 277 127194 212 7 9 40 chain 23228 chr16 90354753 + 77913202 77913474 AluSc5 308 - 25 300 114555 208 0 3 64 chain 6414 chr16 90354753 + 77959047 77959186 MER96 175 - 10 175 181917 61 15 36 25 22 27 16 chain 17797 chr16 90354753 + 77971318 77971556 LTR19B 566 - 0 566 133425 45 0 330 24 3 1 166 chain 26763 chr16 90354753 + 77972324 77972701 MSTA 426 + 28 426 97113 71 1 20 15 16 25 48 4 0 29 3 0 190 chain 23947 chr16 90354753 + 77991352 77991632 AluSc 308 + 11 291 110637 280 chain 22618 chr16 90354753 + 78002656 78003257 MER41C 542 - 243 542 117497 64 297 0 58 14 8 119 0 1 49 chain 54861 chr16 90354753 + 78026062 78026798 MER4E1 777 - 23 765 55791 182 1 0 7 12 23 170 1 2 12 8 7 76 0 2 232 0 4 14 10 0 11 chain 24191 chr16 90354753 + 78027659 78027969 MER41C 542 + 0 314 109270 49 0 1 183 0 3 78 chain 35541 chr16 90354753 + 78034197 78034710 LTR12F 595 + 0 595 75488 89 1 0 14 0 1 42 4 2 29 0 41 22 18 0 46 0 64 38 6 4 23 1 0 180 chain 27062 chr16 90354753 + 78042304 78042618 AluY 311 + 0 308 96072 123 2 0 3 4 0 182 chain 4656 chr16 90354753 + 78073201 78073260 MSTD 398 - 261 319 198998 13 1 0 45 chain 40290 chr16 90354753 + 78092469 78092938 HERVE-int 4064 - 3597 4064 68891 10 3 1 456 chain 40319 chr16 90354753 + 78094047 78094535 LTR2C 499 - 0 496 68856 318 0 9 95 1 0 74 chain 5831 chr16 90354753 + 78113135 78113208 THE1D 372 - 3 76 186859 73 chain 18640 chr16 90354753 + 78116332 78116579 L1PA8 5853 + 5610 5853 131108 70 1 0 7 2 1 55 1 0 17 1 0 93 chain 26520 chr16 90354753 + 78128626 78129000 THE1A 353 - 5 353 97975 74 26 0 139 0 1 24 7 6 104 chain 10214 chr16 90354753 + 78129459 78129603 L1PA11 4918 - 444 590 159547 67 2 0 13 2 1 10 0 5 50 chain 83418 chr16 90354753 + 78145087 78146057 LTR13A 966 + 0 966 42149 853 5 1 112 chain 28711 chr16 90354753 + 78154186 78154491 AluYb8 318 + 1 306 90289 305 chain 5220 chr16 90354753 + 78164124 78164353 MLT1A0 366 + 79 297 192831 44 133 125 24 2 3 16 4 0 6 chain 5032 chr16 90354753 + 78164916 78165020 Tigger3a 397 - 183 346 194812 54 30 89 20 chain 5758 chr16 90354753 + 78184610 78185149 MER21C 908 - 530 907 187574 57 418 161 23 20 115 21 chain 27866 chr16 90354753 + 78208017 78208372 THE1A 353 - 0 353 93469 155 1 0 24 2 1 63 1 0 91 0 1 18 chain 22807 chr16 90354753 + 78281968 78282339 MSTA 426 - 0 381 116541 56 3 0 5 4 7 109 12 11 31 4 0 43 4 0 7 12 31 81 chain 24542 chr16 90354753 + 78299300 78299600 AluSp 311 + 5 303 107299 58 0 2 232 4 0 6 chain 24071 chr16 90354753 + 78300751 78301104 THE1A 353 + 0 353 109921 106 5 4 62 1 0 6 0 1 54 0 1 72 0 11 7 22 11 18 chain 36877 chr16 90354753 + 78314585 78315088 MER75 514 - 0 514 73688 445 30 41 28 chain 4301 chr16 90354753 + 78341218 78341274 MLT1D 503 + 76 131 203199 4 1 0 51 chain 3380 chr16 90354753 + 78395213 78395250 L1MC4a 1092 - 441 478 217488 37 chain 25910 chr16 90354753 + 78447177 78447600 LTR7B 505 - 10 505 100373 37 18 17 82 1 0 48 1 89 27 35 11 69 0 10 105 chain 36313 chr16 90354753 + 78448761 78449437 MER41B 635 - 1 620 74488 78 17 22 53 119 50 165 48 54 83 0 1 113 chain 29401 chr16 90354753 + 78467675 78467985 AluYa5 310 - 0 310 87067 310 chain 25545 chr16 90354753 + 78510208 78510491 L1PA5 6144 + 5839 6122 102019 283 chain 10287 chr16 90354753 + 78542207 78542335 MER30 238 + 108 234 159198 31 2 0 95 chain 9002 chr16 90354753 + 78588189 78588313 MER85 139 + 5 139 165580 84 4 14 36 chain 5390 chr16 90354753 + 78648717 78648777 L1PA8 5853 - 22 82 191084 60 chain 3458 chr16 90354753 + 78659578 78659622 MADE1 96 - 3 47 216018 44 chain 29103 chr16 90354753 + 78725697 78726051 THE1A 353 + 0 353 88537 107 6 5 241 chain 39050 chr16 90354753 + 78730591 78731278 L1PB1 5432 - 19 672 70664 9 1 0 13 1 0 20 3 2 22 3 1 14 43 30 5 3 0 17 1 0 44 22 20 48 2 0 9 2 0 5 2 0 8 1 0 12 1 0 20 16 14 294 12 12 34 chain 18006 chr16 90354753 + 78731283 78731558 L1PB1 5432 + 4449 4726 132841 104 5 4 52 0 4 14 3 0 66 11 13 20 chain 4915 chr16 90354753 + 78777578 78777661 MER51A 677 + 182 254 196118 17 11 0 55 chain 16298 chr16 90354753 + 78788880 78789111 L1PA8 5853 + 5628 5853 137485 28 8 6 20 1 0 6 1 0 52 2 1 19 1 0 93 chain 27613 chr16 90354753 + 78858390 78858745 THE1A 353 - 0 353 94316 16 1 0 226 1 0 111 chain 21753 chr16 90354753 + 78967467 78967794 THE1B 368 - 12 368 121196 101 20 58 23 4 2 130 7 0 42 chain 69915 chr16 90354753 + 78968851 78969646 L1PA5 6144 + 5334 6127 48425 471 1 0 80 1 0 242 chain 82613 chr16 90354753 + 78998019 78999063 THE1A-int 1579 + 0 1044 42500 656 10 15 7 5 0 366 chain 4021 chr16 90354753 + 79018379 79018425 MER58A 224 - 141 187 207071 46 chain 23892 chr16 90354753 + 79031781 79032073 AluSp 311 - 20 311 110946 232 1 0 59 chain 5226 chr16 90354753 + 79039569 79039680 MLT1C 463 - 298 405 192768 17 1 3 5 1 0 16 28 23 43 chain 23458 chr16 90354753 + 79078236 79078607 MSTA 426 + 58 426 113330 106 49 47 66 14 13 136 chain 48714 chr16 90354753 + 79085598 79086741 LTR10C 591 + 10 591 59942 305 564 0 195 0 2 79 chain 33813 chr16 90354753 + 79085935 79086312 L1PA2 6032 - 0 377 77920 377 chain 13598 chr16 90354753 + 79086312 79086467 L1PA2 6032 + 5502 5657 145983 155 chain 6668 chr16 90354753 + 79090468 79090540 MER20 218 - 66 138 179921 72 chain 25961 chr16 90354753 + 79160208 79160577 THE1D 372 + 0 372 100167 74 3 0 6 6 10 89 12 14 179 chain 3655 chr16 90354753 + 79162378 79162420 MIRb 242 - 133 175 212668 42 chain 39217 chr16 90354753 + 79174905 79175376 MER4A1 472 + 0 472 70435 21 0 1 450 chain 3971 chr16 90354753 + 79211645 79211693 MER58A 224 - 17 65 207829 48 chain 15786 chr16 90354753 + 79253289 79253473 AluYf4 310 + 123 308 138996 83 0 1 101 chain 356895 chr16 90354753 + 79256001 79260429 L1PA7 6471 + 2088 6466 11436 30 16 0 334 40 0 85 1 2 84 8 10 11 0 1 30 0 2 11 0 1 60 0 3 334 5 10 4 1 0 138 0 3 282 1 0 24 5 9 713 0 1 405 1 0 81 2 1 327 0 1 309 15 1 227 4 1 652 0 1 137 0 1 43 0 1 8 chain 454614 chr16 90354753 + 79274426 79280112 L1PA7 6471 + 787 6468 8594 32 2 0 379 0 5 66 27 28 936 1 2 165 0 4 4 1 0 128 4 2 5 0 2 88 12 0 39 2 1 423 0 4 228 10 11 20 1 0 125 1 2 5 1 0 12 5 4 22 37 20 21 4 7 692 0 1 482 6 5 322 0 1 511 8 12 16 2 6 73 0 2 768 chain 3815 chr16 90354753 + 79284718 79284794 MER81 114 - 9 84 210161 24 20 19 32 chain 7072 chr16 90354753 + 79298350 79298442 5S 121 + 0 91 176934 47 1 0 44 chain 11571 chr16 90354753 + 79300126 79300263 MER44C 733 - 596 733 154018 137 chain 42668 chr16 90354753 + 79326476 79327094 MER41B 635 + 1 615 65823 20 0 1 97 9 10 152 0 1 21 16 8 35 1 0 10 0 1 104 11 10 94 5 7 43 chain 3708 chr16 90354753 + 79355227 79355268 MER53 195 + 25 66 211826 41 chain 28228 chr16 90354753 + 79379928 79380261 L1PA5 6144 - 2 336 92198 111 1 0 114 0 2 107 chain 143815 chr16 90354753 + 79410436 79412059 L1PA4 6152 - 11 1635 25515 197 0 3 41 0 1 506 3 0 876 chain 32609 chr16 90354753 + 79443827 79444254 MER57A1 433 + 0 429 79838 241 6 7 34 0 1 146 chain 27358 chr16 90354753 + 79447127 79447429 AluYc3 301 - 0 301 95085 189 1 0 112 chain 5949 chr16 90354753 + 79455297 79455423 L1MC1 2226 - 179 302 185685 54 2 0 7 9 6 13 9 10 4 1 0 20 0 2 7 chain 2944 chr16 90354753 + 79457434 79457467 MER58A 224 + 47 80 226243 33 chain 3904 chr16 90354753 + 79458339 79458431 ORSL 269 - 31 124 208783 13 18 28 8 9 0 44 chain 24085 chr16 90354753 + 79488726 79489008 AluSp 311 + 15 297 109831 282 chain 16640 chr16 90354753 + 79568441 79568646 L1PA5 6144 + 5941 6144 136552 191 3 1 11 chain 27520 chr16 90354753 + 79595222 79595535 L1PA4 6152 - 9 321 94600 4 1 0 308 chain 4951 chr16 90354753 + 79689472 79689813 MLT1D 503 + 9 370 195695 11 2 3 20 81 90 35 161 171 31 chain 3331 chr16 90354753 + 79702200 79702238 MADE1 96 + 47 85 218373 38 chain 66609 chr16 90354753 + 79729801 79730530 L1PA2 6032 - 430 1155 49824 78 4 0 647 chain 33692 chr16 90354753 + 79730530 79730896 L1PA2 6032 + 5663 6032 78102 351 0 3 15 chain 3613 chr16 90354753 + 79756736 79756803 HAL1-2a_MD 234 - 182 234 213446 7 12 0 23 3 0 22 chain 81024 chr16 90354753 + 79789327 79790217 L1PA3long 6157 + 5267 6157 43182 890 chain 41579 chr16 90354753 + 79867760 79868300 L1PA8 5853 - 0 533 67187 93 1 0 16 1 0 53 15 13 68 2 0 46 1 0 244 chain 368644 chr16 90354753 + 79885516 79890246 L1PA8A 6298 - 6 4740 11132 136 1 0 4 12 15 56 0 1 4 1 0 219 1 2 18 3 24 321 1 4 13 2 1 89 1 0 69 10 3 79 1 2 52 0 5 67 0 1 340 0 5 888 1 2 167 1 0 257 0 5 77 1 0 217 12 6 175 0 1 452 38 5 18 1 12 14 5 0 181 0 1 417 1 2 307 chain 23002 chr16 90354753 + 80081418 80081809 L1PA15 4387 + 3928 4309 115615 4 1 0 167 12 11 17 22 21 37 1 0 21 4 0 10 2 1 26 0 2 15 14 11 38 chain 9237 chr16 90354753 + 80086424 80086600 L1PB1 5432 - 10 165 164365 23 1 0 8 1 0 45 2 0 14 1 0 5 2 0 19 16 6 6 3 0 16 1 0 13 chain 29755 chr16 90354753 + 80095198 80095516 AluYb8 318 - 0 318 85634 318 chain 509687 chr16 90354753 + 80119959 80125554 L1PA2 6032 - 0 5593 6192 1785 4 0 861 0 1 488 0 1 2145 2 1 303 0 1 7 chain 6977 chr16 90354753 + 80132791 80133110 MSTB1 431 + 81 401 177622 37 215 216 67 chain 537357 chr16 90354753 + 80170216 80176355 L1PA4 6152 - 0 6151 3261 844 0 4 148 0 3 242 15 0 208 0 7 814 4 5 193 1 3 80 0 1 391 1 0 1363 0 5 156 0 1 539 0 2 758 0 2 382 chain 536699 chr16 90354753 + 80253603 80259740 L1PA4 6152 + 12 6151 3351 42 9 10 380 24 18 118 1 0 482 0 2 370 1 0 1513 0 2 392 1 2 299 1 4 2497 0 1 7 chain 60790 chr16 90354753 + 80273405 80274129 L1PA7 6471 - 1 728 52430 494 1 4 229 chain 84462 chr16 90354753 + 80274129 80275146 L1PA7 6471 + 4706 5718 41733 14 0 1 81 1 0 153 8 0 63 0 1 284 3 2 316 0 3 94 chain 154399 chr16 90354753 + 80276476 80278713 SVA_F 1814 + 9 1803 24059 225 0 7 587 236 0 15 102 4 8 1 0 26 0 1 66 130 14 159 1 0 676 0 1 5 chain 15579 chr16 90354753 + 80277334 80277524 SVA_F 1814 + 866 1068 93421 14 1 2 53 5 1 11 0 15 106 chain 8364 chr16 90354753 + 80277539 80277641 SVA_F 1814 + 1083 1185 93421 102 chain 2273 chr16 90354753 + 80277745 80277768 SVA_F 1814 + 966 989 235748 23 chain 803 chr16 90354753 + 80277807 80277871 SVA_F 1814 + 664 768 198017 41 6 46 17 chain 26038 chr16 90354753 + 80388795 80389100 AluYk4 311 - 1 311 99867 283 0 5 22 chain 12612 chr16 90354753 + 80412941 80413105 THE1D 372 + 210 372 149800 130 4 2 30 chain 29126 chr16 90354753 + 80468639 80468943 AluYa5 310 - 6 310 88433 304 chain 23414 chr16 90354753 + 80501486 80501784 AluY 311 + 10 304 113571 123 13 7 137 1 3 24 chain 7540 chr16 90354753 + 80501849 80501981 MLT1A 405 + 287 390 173930 9 37 0 19 0 8 67 chain 1730 chr16 90354753 + 80524290 80524380 MER2 342 - 0 89 155170 20 1 0 4 1 2 16 6 5 42 chain 29423 chr16 90354753 + 80524387 80524736 L1PA7 6471 + 6117 6464 86971 235 0 1 106 3 0 5 chain 2576 chr16 90354753 + 80524742 80524876 MER2 342 - 97 232 155170 61 14 17 40 1 2 9 3 0 6 chain 2680 chr16 90354753 + 80540769 80540799 MER53 195 - 27 57 230431 30 chain 15695 chr16 90354753 + 80564544 80564769 HERVL-int 5654 + 5287 5502 139287 34 7 6 90 10 0 11 0 1 73 chain 9529 chr16 90354753 + 80615745 80615875 MER4B 649 + 139 271 162931 8 0 1 89 4 5 29 chain 14440 chr16 90354753 + 80616086 80616472 L1PB3 3668 + 3294 3595 143079 83 41 42 56 80 6 14 4 0 7 2 1 25 8 6 32 8 4 12 2 1 12 chain 41782 chr16 90354753 + 80617917 80618600 MER4B 649 + 0 641 66923 112 23 36 86 7 8 74 0 1 47 5 0 34 0 1 19 76 25 121 5 4 62 1 0 11 chain 32220 chr16 90354753 + 80624031 80624402 L1PA7 6471 + 6083 6454 80484 371 chain 38143 chr16 90354753 + 80668060 80668546 L1PA6 6164 + 5670 6160 71923 29 0 2 408 0 4 41 2 0 6 chain 155768 chr16 90354753 + 80669164 80671079 L1PA7 6471 + 4509 6439 23883 145 20 24 643 0 2 21 8 12 264 3 1 50 6 11 160 0 1 110 1 2 484 chain 33646 chr16 90354753 + 80675419 80675804 L1PA4 6152 + 5766 6151 78177 385 chain 5078 chr16 90354753 + 80675947 80676008 L1MA2 4263 + 32 97 194310 35 0 4 26 chain 120127 chr16 90354753 + 80676799 80678374 THE1A-int 1579 - 0 1577 31015 616 0 1 45 5 7 49 10 11 193 0 1 4 6 8 139 8 3 12 0 1 306 1 0 181 chain 127428 chr16 90354753 + 80678622 80680048 L1PA5 6144 + 4719 6143 28706 574 0 5 692 7 0 153 chain 6279 chr16 90354753 + 80680063 80680151 THE1A 353 - 266 353 182953 38 0 1 32 3 1 15 chain 232851 chr16 90354753 + 80681373 80684692 L1MA2 4263 + 703 4075 17147 18 0 1 8 2 0 65 1 5 120 4 8 33 0 6 76 10 15 17 3 0 35 0 3 56 0 15 182 0 1 40 0 1 46 0 3 107 0 3 81 0 1 192 0 3 107 3 12 7 15 0 79 10 17 167 0 1 4 0 1 8 0 1 35 2 0 6 0 2 5 0 3 218 0 2 10 2 0 20 4 8 87 1 0 53 5 0 77 3 18 115 3 9 249 7 8 66 10 5 28 0 2 291 2 1 25 3 2 11 0 4 54 1 0 60 10 5 66 16 13 37 0 1 5 1 0 107 2 1 9 1 0 92 7 0 17 chain 5459 chr16 90354753 + 80699365 80699458 MADE1 96 - 0 96 190425 41 19 22 33 chain 22968 chr16 90354753 + 80704083 80704457 THE1C 375 + 0 375 115766 68 0 14 9 27 12 36 1 0 46 2 3 25 7 10 124 11 10 18 chain 136223 chr16 90354753 + 80711673 80713164 L1PA3long 6157 + 4661 6152 26793 1491 chain 22612 chr16 90354753 + 80727925 80728233 MER1B 344 - 0 311 117522 60 0 1 5 4 16 42 4 0 181 6 0 6 chain 318119 chr16 90354753 + 80760986 80764614 L1HS 6032 + 6 3631 12667 250 1 0 317 1 0 325 1 0 160 5 8 591 4 0 306 0 1 1667 chain 43212 chr16 90354753 + 80771779 80772284 L1PA7 6471 - 13 520 65159 160 1 2 53 0 1 291 chain 39850 chr16 90354753 + 80783657 80784127 L1PA5 6144 + 5657 6138 69534 4 0 1 143 1 2 291 0 9 31 chain 4501 chr16 90354753 + 80789764 80789820 L1MC2 1988 + 1932 1987 200758 14 1 0 41 chain 4305 chr16 90354753 + 80799789 80799847 L1MB8 1703 + 1430 1486 203147 5 2 0 51 chain 162126 chr16 90354753 + 80819031 80820977 L1PA7 6471 + 4480 6469 23044 73 1 0 250 0 2 815 2 1 370 0 44 272 0 1 150 2 0 11 chain 6662 chr16 90354753 + 80851220 80851327 MLT1A0 366 - 2 110 179974 45 16 17 46 chain 21684 chr16 90354753 + 80856936 80857240 MER1A 529 + 223 529 121452 174 1 4 54 20 19 55 chain 26519 chr16 90354753 + 80869516 80869857 THE1A 353 - 0 353 97978 12 0 1 110 0 12 108 2 1 109 chain 4985 chr16 90354753 + 80908846 80908910 L1MD2 1676 + 1352 1416 195299 64 chain 13799 chr16 90354753 + 80933195 80933404 L1PA8 5853 - 0 205 145277 92 2 1 19 5 4 36 1 0 6 0 1 4 1 0 11 2 1 30 chain 2531 chr16 90354753 + 80945637 80945680 MLT1A 405 + 322 380 232739 18 3 18 22 chain 21901 chr16 90354753 + 80949977 80950266 AluSg7 307 + 9 294 120617 53 2 0 69 0 1 48 4 1 113 chain 35372 chr16 90354753 + 80952716 80953164 MER4A1 472 - 0 472 75703 122 0 2 97 0 21 216 0 1 13 chain 18568 chr16 90354753 + 80956199 80956569 L1PB1 5432 - 58 393 131312 4 1 0 24 24 19 19 9 0 12 3 0 15 1 0 37 26 24 53 2 0 8 5 1 12 1 0 8 1 0 24 3 0 11 3 0 64 chain 28948 chr16 90354753 + 80960505 80960809 AluYb8 318 - 14 318 89233 304 chain 236724 chr16 90354753 + 80989927 80993395 L1PA13 3608 + 116 3537 16942 20 7 4 23 70 55 68 7 5 123 0 7 7 1 0 12 7 5 16 11 8 12 1 0 11 11 9 15 2 0 18 2 1 95 2 0 259 6 15 18 0 8 100 8 7 79 0 4 17 1 2 393 13 3 250 0 3 54 3 6 72 25 15 13 0 2 11 12 17 55 3 4 73 1 0 304 2 1 98 10 11 327 0 1 198 23 10 72 1 0 28 1 0 113 2 0 62 1 0 55 9 6 47 2 0 5 2 0 18 1 0 22 18 16 15 13 6 12 chain 24992 chr16 90354753 + 81017310 81017607 AluSp 311 + 6 303 104843 297 chain 30558 chr16 90354753 + 81119479 81119797 AluYb8 318 + 0 318 83299 318 chain 8998 chr16 90354753 + 81123009 81123167 Tigger3c 601 + 331 484 165613 33 7 26 66 0 1 17 25 0 10 chain 3328 chr16 90354753 + 81139585 81139636 MER2 342 - 150 199 218435 33 3 1 15 chain 4352 chr16 90354753 + 81140337 81140410 MER21C 908 + 814 884 202567 36 12 9 25 chain 16150 chr16 90354753 + 81151303 81151501 MER51B 395 + 11 219 137900 28 0 10 170 chain 3318 chr16 90354753 + 81152871 81152910 MER67C 710 + 631 670 218631 39 chain 4765 chr16 90354753 + 81157611 81157671 MER5A 189 + 6 66 197754 60 chain 25211 chr16 90354753 + 81168334 81168754 LTR2 463 + 94 463 103681 19 63 9 146 6 8 82 20 21 84 chain 28924 chr16 90354753 + 81224802 81225115 AluYb8 318 - 9 318 89355 177 4 0 132 chain 18198 chr16 90354753 + 81225638 81225856 AluY 311 + 83 301 132332 218 chain 3643 chr16 90354753 + 81231904 81231947 MER20 218 + 22 68 212922 34 0 3 9 chain 3406 chr16 90354753 + 81235334 81235375 MIR 256 + 203 244 216974 41 chain 23281 chr16 90354753 + 81237610 81237903 AluY 311 + 11 295 114290 111 9 4 155 5 1 13 chain 22195 chr16 90354753 + 81359851 81360147 AluSp 311 + 11 291 119371 117 16 0 10 4 4 149 chain 5821 chr16 90354753 + 81365341 81365453 MER65C 458 - 16 131 186938 9 0 1 43 27 29 33 chain 430773 chr16 90354753 + 81374008 81379354 L1PA7 6471 + 1069 6464 9295 250 0 1 53 13 8 379 1 0 238 0 7 74 0 1 83 3 7 95 1 0 368 4 6 466 0 2 377 1 5 347 1 0 34 1 10 126 0 3 629 0 1 33 1 6 143 0 1 127 0 1 77 8 0 78 0 1 85 0 4 16 0 1 67 0 3 125 0 2 29 0 1 34 0 5 142 2 1 77 0 2 382 0 5 220 2 3 154 chain 18338 chr16 90354753 + 81380058 81380296 MER1B 344 + 100 344 131963 166 13 19 59 chain 2829 chr16 90354753 + 81380463 81380596 LTR41 747 - 592 728 228236 21 87 90 25 chain 27300 chr16 90354753 + 81386614 81386911 AluYf4 310 + 0 295 95276 264 2 0 31 chain 52693 chr16 90354753 + 81390724 81391305 L1PA3long 6157 - 11 592 57193 581 chain 18531 chr16 90354753 + 81427858 81428220 THE1D 372 - 0 372 131428 87 0 1 38 30 36 16 33 41 11 17 24 77 12 0 41 chain 16494 chr16 90354753 + 81449130 81449322 L1PA7 6471 - 7 199 136942 192 chain 6934 chr16 90354753 + 81455597 81456001 L1PB1 5432 + 4890 4997 126175 31 297 0 76 chain 23638 chr16 90354753 + 81456010 81456297 AluSp 311 + 10 297 112370 287 chain 8119 chr16 90354753 + 81456308 81456781 L1PB1 5432 + 4997 5281 126175 55 229 51 11 1 0 24 1 0 9 1 0 11 5 1 10 11 9 39 8 7 12 1 0 45 chain 3047 chr16 90354753 + 81467628 81467660 MIR 256 + 97 129 224063 32 chain 13420 chr16 90354753 + 81472361 81472548 AluY 311 + 3 173 146629 120 1 0 10 17 1 39 chain 3166 chr16 90354753 + 81473464 81473498 MER63D 473 + 158 192 221641 34 chain 19835 chr16 90354753 + 81484710 81485073 THE1B 368 + 0 368 127697 107 2 6 7 2 0 57 87 90 101 chain 5720 chr16 90354753 + 81582090 81582163 MER20 218 - 92 164 187920 42 1 0 30 chain 3972 chr16 90354753 + 81603397 81603482 MIRb 242 + 94 177 207798 39 22 21 5 1 0 18 chain 2775 chr16 90354753 + 81611228 81611266 HAL1-2a_MD 234 + 87 122 229099 28 3 0 7 chain 4029 chr16 90354753 + 81628535 81628586 MER44A 345 - 109 160 206950 51 chain 4004 chr16 90354753 + 81671106 81671151 MIRb 242 - 102 147 207322 45 chain 4751 chr16 90354753 + 81697018 81697078 L1MC3 1789 + 337 397 197901 60 chain 5837 chr16 90354753 + 81709433 81709506 MER5A1 166 - 47 120 186799 73 chain 153280 chr16 90354753 + 81722267 81724005 L1PA5 6144 - 2 1745 24191 248 1 2 594 1 5 894 chain 25760 chr16 90354753 + 81763454 81763766 AluSp 311 - 1 311 101042 182 1 0 21 1 0 107 chain 46453 chr16 90354753 + 81764575 81765534 PABL_A 660 - 0 656 61636 67 0 1 5 2 0 5 0 1 5 1 3 144 315 9 345 44 45 26 chain 20492 chr16 90354753 + 81771271 81771547 AluSz6 309 + 5 279 125653 61 1 0 67 1 0 6 17 17 123 chain 5808 chr16 90354753 + 81790025 81790099 MIR 256 - 108 182 187061 74 chain 28772 chr16 90354753 + 81803137 81803453 AluYa5 310 + 0 310 90008 97 3 0 35 3 0 178 chain 9158 chr16 90354753 + 81816918 81817019 L1PA4 6152 - 6 107 164774 101 chain 17876 chr16 90354753 + 81826146 81826476 THE1C 375 - 35 375 133176 48 6 7 36 85 94 155 chain 9990 chr16 90354753 + 81830180 81830468 MLT1C 463 + 59 410 160627 46 29 24 34 17 33 11 2 0 14 75 126 47 0 3 13 chain 27610 chr16 90354753 + 81835706 81836016 AluYk4 311 - 0 311 94324 38 0 1 272 chain 3657 chr16 90354753 + 81839777 81839819 MER33 330 - 280 322 212618 42 chain 143265 chr16 90354753 + 81845091 81847170 L1PA7 6471 - 116 1897 25604 552 319 0 99 5 6 74 0 4 172 0 10 84 1 0 216 0 2 5 2 0 107 0 1 71 0 3 283 4 5 9 0 2 76 chain 26942 chr16 90354753 + 81872032 81872379 L1PA8 5853 + 5512 5853 96476 52 1 0 44 2 0 71 1 0 9 1 0 11 0 1 37 9 8 15 1 0 93 chain 25493 chr16 90354753 + 81936331 81936672 THE1B 368 - 20 368 102258 106 1 0 10 1 0 18 0 1 4 1 0 4 0 7 29 1 0 6 0 3 160 chain 4095 chr16 90354753 + 81939593 81939754 L1MC4a 1092 - 1 132 206011 25 94 64 42 chain 7804 chr16 90354753 + 81940662 81940753 L1PA5 6144 + 6049 6140 172286 91 chain 17601 chr16 90354753 + 81968314 81968644 THE1B 368 - 0 368 133993 56 7 6 29 5 8 20 33 65 6 0 3 37 29 30 108 chain 46743 chr16 90354753 + 81987978 81988626 L1PA8 5853 - 0 679 61420 92 2 1 16 1 0 12 21 53 21 0 8 41 2 0 31 4 0 14 1 0 390 chain 3525 chr16 90354753 + 81989543 81989816 L1MB8 1703 - 25 241 214962 16 3 0 7 34 27 18 162 115 33 chain 21924 chr16 90354753 + 81995530 81995772 7SK 245 + 0 242 120524 242 chain 422857 chr16 90354753 + 82010960 82016029 L1PA3long 6157 + 0 6152 9463 152 0 1 628 0 128 136 0 1 190 324 0 486 1 0 586 4 1276 176 1 0 594 0 4 518 2 1 433 0 4 838 chain 114630 chr16 90354753 + 82041907 82043421 THE1B-int 1605 + 18 1605 32914 206 0 4 40 0 2 127 0 64 8 11 13 168 51 51 455 0 1 448 chain 29445 chr16 90354753 + 82044043 82044475 MER4A1 472 + 0 462 86875 25 1 2 5 1 0 68 5 9 54 0 2 62 1 22 29 4 3 15 7 11 155 chain 5695 chr16 90354753 + 82050033 82050109 LTR16C 481 - 52 128 188157 29 0 1 4 1 0 42 chain 39013 chr16 90354753 + 82058303 82058807 MER1A 529 - 0 499 70730 15 1 0 43 11 7 434 chain 2620 chr16 90354753 + 82098048 82098078 L1MB7 1623 - 213 243 231422 30 chain 85239 chr16 90354753 + 82111441 82112729 L1MA3 4352 + 3019 4303 41443 102 5 0 84 0 19 172 7 8 41 5 0 159 0 1 56 5 23 43 8 8 144 2 0 91 12 11 74 0 2 36 54 27 59 1 0 79 2 0 24 3 2 4 1 0 15 chain 47259 chr16 90354753 + 82169571 82170222 PABL_A 660 + 0 642 60994 235 5 4 29 19 19 167 8 0 188 chain 552701 chr16 90354753 + 82172860 82178863 L1PA2 6032 + 12 6032 1110 1582 1 0 295 0 10 1981 0 4 492 0 4 1652 chain 529222 chr16 90354753 + 82237377 82243490 L1PA5 6144 - 0 6141 4273 11 3 1 364 0 1 399 4 1 1022 0 4 831 1 2 96 0 7 1024 0 4 312 0 1 786 0 1 199 12 13 38 1 0 890 7 21 113 chain 4614 chr16 90354753 + 82256215 82256274 L1MA4 2864 - 848 906 199467 8 1 0 50 chain 4486 chr16 90354753 + 82267795 82267850 Tigger8 508 - 209 264 200964 55 chain 5224 chr16 90354753 + 82288537 82288610 MER3 215 + 88 177 192784 30 0 6 7 0 10 36 chain 25635 chr16 90354753 + 82289940 82290317 THE1C 375 - 0 375 101561 25 1 0 134 32 30 39 1 5 21 3 0 121 chain 528060 chr16 90354753 + 82337032 82343469 L1PA7 6471 - 7 6460 4397 213 0 1 629 1 0 949 0 4 281 1 2 541 0 1 270 0 3 17 0 4 205 8 7 103 0 1 16 0 1 564 11 12 1346 0 1 63 0 1 12 0 4 101 3 0 695 19 15 158 3 5 228 chain 3991 chr16 90354753 + 82343473 82343524 MADE1 96 + 45 96 207511 51 chain 136894 chr16 90354753 + 82368034 82369644 L1PA5 6144 - 5 1916 26664 297 31 325 230 2 1 937 1 9 112 chain 23381 chr16 90354753 + 82369657 82369924 L1PA5 6144 + 3959 4226 113753 267 chain 29975 chr16 90354753 + 82398956 82399333 THE1C 375 - 0 375 84890 26 1 0 181 1 0 145 1 0 4 0 1 18 chain 28361 chr16 90354753 + 82401371 82401681 AluYf4 310 + 0 310 91729 310 chain 86902 chr16 90354753 + 82410149 82411277 L1PA8 5853 - 0 1121 40823 93 1 0 19 2 1 39 24 23 70 9 7 37 1 0 267 0 1 286 2 0 278 chain 22077 chr16 90354753 + 82448449 82448687 L1PA3long 6157 + 5904 6142 119899 238 chain 12173 chr16 90354753 + 82480464 82480822 L1PB1 5432 + 5103 5422 151524 11 1 0 20 1 0 12 1 0 10 2 0 3 1 0 8 2 0 23 11 4 26 104 88 19 2 0 4 1 0 10 7 5 24 1 0 21 1 0 13 1 0 18 chain 28970 chr16 90354753 + 82482529 82482848 AluYg6 310 - 0 310 89134 179 9 0 131 chain 14660 chr16 90354753 + 82500188 82500488 THE1B 368 - 64 368 142391 62 1 0 12 1 0 16 0 4 10 7 10 21 1 0 37 63 64 27 0 1 24 3 1 15 chain 8105 chr16 90354753 + 82505820 82505922 L1MB8 1703 - 115 217 170460 102 chain 17691 chr16 90354753 + 82511349 82511694 THE1C 375 - 22 347 133725 109 6 0 10 18 21 31 0 1 49 21 2 21 44 45 36 chain 31836 chr16 90354753 + 82533808 82534190 L1PA2 6032 + 5651 6032 81109 4 1 0 220 7 0 7 1 8 142 chain 22841 chr16 90354753 + 82534235 82534513 AluSg7 307 + 10 288 116391 122 1 0 90 0 1 65 chain 43689 chr16 90354753 + 82544138 82544675 MLT2A2 560 - 7 545 64581 53 0 1 484 chain 27719 chr16 90354753 + 82545235 82545547 L1PA2 6032 + 5720 6032 93971 312 chain 3944 chr16 90354753 + 82545576 82545619 MLT2A2 560 + 517 560 208217 43 chain 7214 chr16 90354753 + 82587593 82587689 THE1-int 844 - 42 136 175977 31 2 0 63 chain 19630 chr16 90354753 + 82592638 82592969 THE1C 375 + 0 329 128311 88 1 0 91 0 2 5 43 38 54 14 16 35 chain 10144 chr16 90354753 + 82718757 82719047 MLT1A0 366 - 2 296 159877 24 2 0 34 12 14 34 102 105 32 10 11 40 chain 2893 chr16 90354753 + 82785249 82785280 MER45C 884 + 726 757 227158 31 chain 2914 chr16 90354753 + 82794921 82794962 MSTB 430 - 383 422 226797 8 2 0 31 chain 28991 chr16 90354753 + 82819368 82819869 LTR10F 562 - 0 562 89032 87 2 0 172 31 37 13 62 0 22 1 116 78 0 4 33 chain 31341 chr16 90354753 + 82820119 82820488 L1PA5 6144 - 7 377 81910 140 0 1 229 chain 16346 chr16 90354753 + 82824188 82824474 THE1C 375 - 0 289 137352 123 6 0 10 58 67 89 chain 4613 chr16 90354753 + 82824509 82824560 LTR17 781 + 0 51 199475 51 chain 5705 chr16 90354753 + 82942659 82942734 MER2 342 - 128 206 188056 67 0 3 8 chain 17557 chr16 90354753 + 82965162 82965523 THE1B 368 - 1 368 134107 55 7 6 66 72 77 45 10 11 12 23 24 71 chain 7410 chr16 90354753 + 82969960 82970052 MER1B 344 + 158 250 174703 92 chain 34711 chr16 90354753 + 83003544 83003981 L1PA7 6471 - 1 447 76608 167 0 9 270 chain 26895 chr16 90354753 + 83003987 83004270 AluYb8 318 - 2 285 96645 283 chain 24041 chr16 90354753 + 83010971 83011311 THE1C 375 + 0 375 110113 96 6 41 134 16 17 62 1 0 25 chain 7558 chr16 90354753 + 83030609 83030777 HAL1-2a_MD 234 - 96 228 173821 7 3 0 35 6 0 7 0 6 16 6 0 10 26 2 40 3 0 9 chain 23260 chr16 90354753 + 83058883 83059244 THE1C 375 - 0 375 114388 25 1 0 151 24 35 12 6 10 78 2 3 4 1 0 57 chain 8952 chr16 90354753 + 83062189 83062321 MER44A 345 - 64 198 165865 22 9 11 101 chain 3541 chr16 90354753 + 83106404 83106450 MER5A1 166 + 83 128 214695 29 1 0 16 chain 4979 chr16 90354753 + 83110472 83110536 MADE1 96 - 5 85 195377 29 0 16 35 chain 27704 chr16 90354753 + 83118670 83119023 THE1A 353 - 0 353 94027 243 2 1 24 0 1 84 chain 37941 chr16 90354753 + 83159735 83160305 LTR10B1 532 - 0 527 72220 30 25 23 16 0 1 229 4 2 41 32 0 16 8 0 169 chain 31622 chr16 90354753 + 83169197 83169764 L1PB1 5432 + 4883 5420 81446 167 8 13 40 7 4 7 1 0 20 2 1 11 1 0 10 2 0 3 2 0 8 2 0 53 19 17 44 2 1 17 21 9 15 28 23 26 1 0 20 1 0 12 1 0 16 chain 27455 chr16 90354753 + 83175119 83175494 L1PA8 5853 - 0 371 94798 93 1 0 19 4 3 59 2 1 66 9 7 15 0 1 25 1 0 70 0 1 11 chain 18284 chr16 90354753 + 83247348 83247760 LTR12 884 + 0 529 132116 25 1 0 31 15 59 17 78 0 16 35 191 38 2 0 67 6 4 81 chain 7136 chr16 90354753 + 83254122 83254203 L1PA5 6144 + 6047 6128 176500 81 chain 28898 chr16 90354753 + 83257462 83257991 L1PB1 5432 - 10 488 89459 17 2 1 13 1 0 17 7 6 21 3 1 15 1 0 4 2 0 30 17 1 16 1 0 40 4 3 16 2 1 52 2 0 9 7 3 10 1 0 12 1 0 16 3 0 12 16 3 159 chain 4719 chr16 90354753 + 83293256 83293326 L1PA3long 6157 - 0 73 198299 12 4 7 54 chain 36989 chr16 90354753 + 83369127 83369589 LTR2 463 + 0 463 73523 355 22 23 85 chain 15885 chr16 90354753 + 83398421 83398683 L1PA8 5853 + 5600 5853 138694 10 2 0 68 32 27 35 2 1 12 8 7 93 chain 29818 chr16 90354753 + 83402147 83402786 L1PB1 5432 - 10 571 85383 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 36 25 6 1 0 15 7 6 35 30 28 44 2 0 6 8 4 14 1 0 5 2 1 18 3 0 8 76 30 221 chain 41357 chr16 90354753 + 83464424 83464886 L1PA2 6032 - 3 465 67462 462 chain 25726 chr16 90354753 + 83484766 83485107 THE1B 368 - 19 368 101190 56 0 1 50 1 0 10 1 0 18 0 4 10 0 1 30 1 0 135 0 5 29 chain 12235 chr16 90354753 + 83486620 83486968 L1PB1 5432 + 5109 5427 151280 5 1 0 24 1 0 9 2 1 10 5 1 8 2 0 53 2 1 10 47 49 14 2 0 8 16 6 19 7 4 15 2 0 24 1 0 20 6 5 9 1 0 18 2 0 5 chain 163401 chr16 90354753 + 83529468 83531270 L1PA2 6032 + 4221 6029 22892 682 1 0 192 0 1 913 0 6 14 chain 11576 chr16 90354753 + 83537558 83537725 L1PA8 5853 + 5688 5853 154004 52 2 1 14 6 5 93 chain 7832 chr16 90354753 + 83542976 83543183 MER58A 224 - 19 224 172118 50 60 58 47 7 25 10 18 0 15 chain 33572 chr16 90354753 + 83573814 83574363 LTR3B_ 500 + 10 499 78281 69 1 0 42 40 41 141 0 2 43 3 4 55 0 2 21 64 0 37 1 0 32 chain 12259 chr16 90354753 + 83642740 83642941 MER30 238 + 0 229 151160 14 31 27 59 0 28 25 3 7 69 chain 4115 chr16 90354753 + 83658612 83658716 MER63A 208 + 90 202 205715 32 19 20 19 15 22 19 chain 50061 chr16 90354753 + 83666254 83666886 MER41B 635 - 1 635 58976 292 0 1 211 1 2 36 1 0 81 0 1 10 chain 567437 chr16 90354753 + 83670857 83676901 L1HS 6032 + 2 6032 61 59 15 0 11 0 1 5959 chain 5015 chr16 90354753 + 83767839 83767988 LOR1a 498 - 0 147 106232 71 7 8 31 3 0 37 chain 27309 chr16 90354753 + 83768039 83768332 L1PA3long 6157 + 5849 6142 95250 293 chain 6664 chr16 90354753 + 83768376 83768574 LOR1a 498 - 222 420 106232 198 chain 8387 chr16 90354753 + 83783936 83784042 MER57F 435 - 329 435 168926 106 chain 15854 chr16 90354753 + 83790049 83790272 MER30 238 + 0 238 138790 92 3 0 14 5 0 7 1 24 101 chain 45001 chr16 90354753 + 83802081 83802614 MER41A 554 - 7 544 63058 130 6 10 397 chain 41273 chr16 90354753 + 83804050 83804576 MER41A 554 - 7 536 67571 75 1 6 52 3 1 395 chain 23484 chr16 90354753 + 83806937 83807255 THE1D 372 - 42 372 113199 137 16 18 93 0 10 72 chain 40740 chr16 90354753 + 83840220 83840764 MER41A 554 + 0 554 68260 87 6 5 4 0 1 303 0 3 43 0 3 20 1 6 38 2 0 28 0 1 12 chain 4060 chr16 90354753 + 83874829 83874877 MER4D1 891 - 344 392 206487 48 chain 171791 chr16 90354753 + 83899229 83901445 L1PA8 5853 - 1871 4125 21846 372 0 3 175 11 10 59 1 7 91 0 1 50 1 0 15 2 6 70 0 6 55 2 1 157 13 15 211 2 0 22 0 2 169 0 4 69 11 23 95 1 0 5 1 2 229 0 2 31 1 2 295 chain 144947 chr16 90354753 + 83901447 83903636 L1PA8 5853 + 3993 5853 25334 807 0 1 23 0 1 182 0 2 44 318 0 36 5 0 156 12 13 306 1 0 44 2 0 70 2 1 14 11 10 36 3 2 19 1 0 86 4 0 7 chain 82247 chr16 90354753 + 83912790 83913787 LTR5B 1012 - 0 1012 42657 8 0 2 513 1 0 352 0 14 123 chain 4875 chr16 90354753 + 83923280 83923361 LTR19C 757 - 663 744 196543 4 1 0 29 1 0 11 2 0 10 1 5 22 chain 32238 chr16 90354753 + 83994722 83995156 MER4A1 472 - 0 447 80463 72 0 2 5 0 2 38 5 6 112 1 9 201 chain 11706 chr16 90354753 + 84049601 84049827 THE1B 368 - 58 274 153439 4 1 0 66 3 2 8 1 0 16 0 1 4 1 0 8 0 3 13 27 16 52 9 10 13 chain 25436 chr16 90354753 + 84165286 84165575 AluYf4 310 - 13 300 102524 233 2 0 54 chain 27047 chr16 90354753 + 84174426 84174710 AluYd8 298 + 0 284 96123 284 chain 21701 chr16 90354753 + 84179415 84179704 AluSx3 311 + 0 285 121386 19 1 0 44 8 4 65 7 8 145 chain 3931 chr16 90354753 + 84222721 84222779 MLT1D 503 - 446 503 208397 36 2 1 20 chain 122011 chr16 90354753 + 84237279 84238752 LTR12C 1709 - 0 1709 30382 460 1 0 21 0 4 106 3 1 5 1 0 35 0 162 78 1 0 88 0 41 401 6 40 267 chain 28618 chr16 90354753 + 84245898 84246272 THE1C 375 + 7 370 90662 342 1 0 6 12 2 13 chain 23308 chr16 90354753 + 84253056 84253352 AluY 311 + 4 302 114157 128 7 8 10 5 6 146 chain 4327 chr16 90354753 + 84267476 84267562 MIRb 242 + 42 134 202860 20 26 32 40 chain 22950 chr16 90354753 + 84291827 84292290 LTR12F 595 + 0 595 115862 69 1 2 20 95 147 34 14 78 42 1 0 18 14 27 46 0 2 102 0 1 7 chain 23015 chr16 90354753 + 84332695 84333003 AluSp 311 + 11 293 115553 117 4 0 78 1 0 75 21 0 12 chain 3215 chr16 90354753 + 84353459 84353495 MIR 256 + 103 139 220651 36 chain 4012 chr16 90354753 + 84360699 84360750 MER6C 202 - 0 53 207207 44 0 2 7 chain 3434 chr16 90354753 + 84361104 84361143 MER6C 202 + 83 122 216501 39 chain 33600 chr16 90354753 + 84368733 84369320 L1M1 2793 + 823 1351 78237 7 2 0 9 1 0 54 31 28 27 39 0 38 21 18 176 1 0 71 14 9 6 4 0 17 2 1 67 chain 3230 chr16 90354753 + 84379809 84379850 MER5A 189 + 125 166 220423 41 chain 3657 chr16 90354753 + 84392228 84392569 L1MC4 1079 - 220 569 212613 26 11 26 7 15 0 11 183 191 4 1 0 31 36 37 16 chain 6851 chr16 90354753 + 84394779 84394983 L1MC2 1988 + 1602 1800 178572 35 1 0 34 103 98 31 chain 22329 chr16 90354753 + 84398263 84398584 AluSz6 309 + 0 304 118781 56 4 0 69 0 3 5 27 11 160 chain 14418 chr16 90354753 + 84410075 84410255 MER30 238 + 47 237 143158 61 5 15 114 chain 25892 chr16 90354753 + 84414610 84415001 LTR7B 505 - 2 505 100473 49 14 13 52 0 1 26 1 0 19 13 21 12 4 37 21 3 27 12 0 38 60 0 10 105 chain 34441 chr16 90354753 + 84415600 84415999 L1PA7 6471 - 2 407 77007 14 0 6 385 chain 43160 chr16 90354753 + 84434232 84434828 L1MA3 4352 - 659 1269 65217 23 1 0 12 8 13 46 6 11 93 4 7 361 2 4 40 chain 23315 chr16 90354753 + 84437296 84437586 AluSp 311 - 12 301 114127 169 1 0 120 chain 26866 chr16 90354753 + 84442732 84443054 L1PA6 6164 + 5832 6153 96755 160 1 0 161 chain 5974 chr16 90354753 + 84450691 84450834 MIR 256 + 77 224 185474 4 1 0 58 53 58 27 chain 16912 chr16 90354753 + 84465887 84466137 L1PA8 5853 - 0 255 135820 93 1 0 19 2 1 32 6 15 13 2 1 6 0 1 64 2 0 10 chain 25182 chr16 90354753 + 84470369 84470667 AluSp 311 - 13 311 103836 298 chain 57027 chr16 90354753 + 84489371 84489976 L1HS 6032 - 2141 2746 54450 605 chain 200142 chr16 90354753 + 84489976 84492114 L1HS 6032 + 3895 6032 19196 1992 1 0 145 chain 25085 chr16 90354753 + 84505239 84505612 THE1C 375 + 0 375 104385 40 0 5 34 9 6 57 8 12 26 7 6 164 1 0 6 2 0 19 chain 34153 chr16 90354753 + 84509227 84509645 LTR3A 482 + 0 430 77408 125 0 3 27 8 17 258 chain 24327 chr16 90354753 + 84535478 84535762 AluSp 311 + 10 294 108509 284 chain 6173 chr16 90354753 + 84546021 84546097 LTR51 675 + 0 77 183784 69 0 1 7 chain 6228 chr16 90354753 + 84588345 84588414 MSTA 426 - 329 398 183335 69 chain 4025 chr16 90354753 + 84588760 84588808 MIRb 242 - 126 174 206993 48 chain 9021 chr16 90354753 + 84607644 84607748 AluJb 308 + 153 257 165483 104 chain 15086 chr16 90354753 + 84643217 84643571 THE1C 375 + 0 375 141069 15 7 5 27 87 110 22 0 2 5 37 35 154 chain 19447 chr16 90354753 + 84680690 84680902 AluYa5 310 + 82 294 128830 212 chain 12957 chr16 90354753 + 84708932 84709129 Tigger2a 444 + 206 406 148406 18 2 3 49 14 16 114 chain 3721 chr16 90354753 + 84716307 84716352 MLT2B1 522 + 477 522 211631 45 chain 16102 chr16 90354753 + 84727544 84727743 AluSg 306 + 6 203 138051 143 7 5 49 chain 23569 chr16 90354753 + 84801382 84801633 SVA_F 1814 - 2 253 112748 251 chain 26019 chr16 90354753 + 84804096 84804396 AluYk4 311 + 0 299 99949 279 2 1 19 chain 29364 chr16 90354753 + 84814200 84814586 LTR12F 595 + 0 480 87228 102 1 2 42 2 0 20 6 99 165 0 2 48 chain 27353 chr16 90354753 + 84815219 84815650 MLT2A2 560 + 0 553 95105 180 1 0 16 17 22 73 0 1 6 11 119 41 11 19 39 10 11 26 chain 21226 chr16 90354753 + 84832679 84832932 AluY 311 + 43 296 123120 4 1 0 85 0 1 163 chain 12729 chr16 90354753 + 84882479 84882613 AluYa8 305 + 168 302 149339 134 chain 24390 chr16 90354753 + 84888845 84889301 MLT2A2 560 - 0 560 108139 6 0 4 32 8 0 12 0 6 15 6 5 17 1 6 40 0 11 11 24 122 46 43 34 15 12 10 168 chain 455497 chr16 90354753 + 84889301 84894890 HERVL-int 5654 - 0 5654 8560 87 2 3 1512 24 25 398 6 7 928 0 1 65 2 1 29 1 2 243 0 3 156 0 1 104 0 9 697 0 10 143 0 8 87 17 5 30 5 0 171 0 10 134 1 16 179 0 20 33 2 1 18 3 0 13 0 1 86 0 2 187 0 3 226 chain 24739 chr16 90354753 + 84939313 84939613 AluSq10 312 - 10 312 106230 254 1 3 45 chain 22516 chr16 90354753 + 84968603 84968887 AluSx 319 + 7 288 117961 125 0 1 10 3 0 118 4 3 24 chain 28425 chr16 90354753 + 84969813 84970118 AluYb8 318 + 11 316 91489 305 chain 4906 chr16 90354753 + 84996472 84996564 MER50 708 - 594 691 196201 55 20 25 17 chain 24321 chr16 90354753 + 85021490 85021786 AluY 311 + 0 292 108537 30 3 0 177 5 4 81 chain 23122 chr16 90354753 + 85031604 85031884 AluY 311 + 20 299 115029 65 9 6 184 0 2 22 chain 4350 chr16 90354753 + 85046027 85046091 LTR37B 484 - 32 95 202593 41 3 2 20 chain 5800 chr16 90354753 + 85056663 85056747 MLT1D 503 + 331 436 187146 55 4 25 25 chain 24237 chr16 90354753 + 85077358 85077649 AluSp 311 + 2 292 109010 194 0 2 86 3 0 8 chain 15508 chr16 90354753 + 85186627 85186895 AluJb 308 + 13 279 139863 97 9 8 35 49 48 78 chain 3753 chr16 90354753 + 85411057 85411101 MIR 256 + 70 114 211085 44 chain 3058 chr16 90354753 + 85528023 85528058 MLT1C 463 - 361 396 223843 35 chain 5962 chr16 90354753 + 85619511 85619584 MIR 256 + 71 145 185580 62 0 1 11 chain 5107 chr16 90354753 + 85626336 85626401 MIR 256 + 52 118 194001 4 0 1 61 chain 23041 chr16 90354753 + 85704818 85705063 AluYa5 310 + 54 299 115441 245 chain 20660 chr16 90354753 + 85719795 85720038 AluY 311 + 57 297 125104 74 3 0 166 chain 12491 chr16 90354753 + 85727141 85727322 L1MA7 2200 - 237 412 150283 14 2 0 35 3 0 85 1 0 41 chain 12965 chr16 90354753 + 85771493 85771677 MER30 238 + 37 235 148372 61 0 1 9 4 11 31 4 10 75 chain 8776 chr16 90354753 + 85781248 85781362 MER4B 649 - 21 147 166789 54 0 12 60 chain 20530 chr16 90354753 + 85824922 85825215 L1PA8 5853 - 0 296 125545 5 0 1 87 1 0 19 2 1 61 1 0 60 1 5 5 2 0 44 0 3 5 chain 126061 chr16 90354753 + 85841223 85842636 SVA_D 2077 - 0 2071 29077 99 0 4 512 0 584 40 0 40 169 0 40 553 8 0 22 2 0 8 chain 9297 chr16 90354753 + 85852075 85852178 L1PA5 6144 - 6 109 164071 103 chain 6486 chr16 90354753 + 85858719 85858846 MLT1C 463 - 298 428 181352 11 6 8 6 1 0 16 6 0 56 13 21 12 chain 32286 chr16 90354753 + 85871183 85871665 L1PA16 3655 + 3145 3603 80388 53 0 1 5 3 1 84 14 12 278 3 0 6 14 0 7 4 0 11 chain 15716 chr16 90354753 + 85897933 85898149 L1PB2 3958 + 3626 3838 139220 55 1 0 73 2 0 20 7 6 58 chain 193639 chr16 90354753 + 85907891 85910081 L1PA5 6144 - 1708 3901 19723 397 0 2 290 1 0 72 1 0 499 1 0 191 5 6 148 0 1 449 0 4 64 2 0 70 chain 149508 chr16 90354753 + 85910081 85911778 L1PA5 6144 + 4441 6144 24675 853 0 1 419 0 1 171 1 6 140 1 0 112 chain 18044 chr16 90354753 + 85968923 85969266 MER4A1 472 - 74 418 132750 110 48 68 24 0 2 10 30 0 22 6 16 12 1 0 80 chain 38291 chr16 90354753 + 86004391 86005247 MER41A 554 + 0 554 71720 87 8 9 88 8 9 233 0 4 49 330 22 53 chain 21663 chr16 90354753 + 86043627 86043924 L1PA8 5853 + 5562 5853 121529 47 2 0 69 2 1 9 1 0 52 2 1 19 1 0 93 chain 3656 chr16 90354753 + 86047542 86047616 HAL1-2a_MD 234 + 24 104 212662 16 8 17 32 4 1 14 chain 7014 chr16 90354753 + 86109540 86109669 MIRb 242 - 50 174 177367 32 32 27 65 chain 3040 chr16 90354753 + 86117267 86117301 LTR16C 481 + 431 465 224205 34 chain 21792 chr16 90354753 + 86163897 86164193 AluY 311 + 10 301 121049 43 22 16 63 0 1 168 chain 9067 chr16 90354753 + 86200033 86200460 MLT1G1-int 1178 + 732 1116 165230 4 0 1 67 108 88 37 177 153 34 chain 52976 chr16 90354753 + 86208802 86209381 L1PA5 6144 + 5547 6126 57032 579 chain 17379 chr16 90354753 + 86262412 86262689 THE1D 372 - 92 372 134566 32 4 10 16 22 20 9 0 4 57 0 4 73 9 0 55 chain 543198 chr16 90354753 + 86266905 86272903 L1PA3long 6157 + 4 6146 2315 148 0 1 211 0 1 411 0 128 1175 0 3 243 0 4 440 0 1 925 1 0 1105 0 7 1339 chain 548960 chr16 90354753 + 86295779 86301803 L1PA2 6032 + 8 6031 1581 244 5 4 55 2 0 614 0 1 658 0 1 1464 1 0 1695 0 1 1286 chain 45794 chr16 90354753 + 86302997 86303499 L1PA3long 6157 - 0 505 62238 331 0 3 171 chain 5707 chr16 90354753 + 86309040 86309106 HY4 93 - 3 69 188040 66 chain 39576 chr16 90354753 + 86311700 86312131 LTR7Y 441 + 0 431 69928 431 chain 109113 chr16 90354753 + 86312141 86313843 HERVH-int 3825 + 0 3482 34416 190 0 252 42 0 56 30 1 0 10 1 0 4 312 1577 911 7 6 42 37 247 115 chain 39897 chr16 90354753 + 86314446 86314885 LTR7Y 441 + 0 441 69459 38 0 2 401 chain 3366 chr16 90354753 + 86340595 86340634 MER103C 291 - 130 169 217757 39 chain 6584 chr16 90354753 + 86379903 86379985 L1MB3 1562 - 275 357 180581 82 chain 3003 chr16 90354753 + 86429073 86429130 LTR16C 481 - 31 87 224978 13 10 9 34 chain 9835 chr16 90354753 + 86440785 86440965 MER30 238 + 47 238 161417 60 36 49 37 3 0 17 0 1 27 chain 20137 chr16 90354753 + 86493480 86493755 AluY 311 + 29 291 126720 97 16 0 23 4 7 135 chain 8843 chr16 90354753 + 86587428 86587538 LTR12C 1709 + 929 1080 166417 40 0 41 70 chain 3684 chr16 90354753 + 86592136 86592175 MADE1 96 - 54 93 212170 39 chain 23859 chr16 90354753 + 86596342 86596630 AluY 311 + 27 306 111129 105 0 1 151 10 0 22 chain 5300 chr16 90354753 + 86621548 86621691 HAL1-2a_MD 234 + 0 113 192024 14 24 0 10 18 0 16 2 23 31 9 0 19 chain 5777 chr16 90354753 + 86631812 86631876 MLT2A2 560 - 269 333 187378 64 chain 4263 chr16 90354753 + 86689293 86689361 L1PB3 3668 - 106 165 203712 34 10 1 24 chain 3456 chr16 90354753 + 86699131 86699254 MIR 256 - 33 155 216060 22 69 68 32 chain 22480 chr16 90354753 + 86701407 86701685 AluY 311 + 25 306 118107 7 0 4 78 5 4 188 chain 82242 chr16 90354753 + 86711951 86712840 L1PA2 6032 - 2 902 42661 504 0 11 385 chain 13541 chr16 90354753 + 86712844 86712992 L1PA2 6032 + 4939 5087 146207 148 chain 29450 chr16 90354753 + 86720192 86720501 AluYa5 310 - 1 310 86842 309 chain 38085 chr16 90354753 + 86775624 86776072 LTR7 482 - 1 482 72008 97 0 2 63 0 4 31 0 31 198 4 0 55 chain 290850 chr16 90354753 + 86777327 86780808 HERVH-int 3825 - 0 3825 13969 493 2 212 28 1 0 121 4 4 530 0 3 413 0 10 295 4 31 455 16 1 449 0 3 12 0 2 12 1 2 49 3 2 38 6 56 24 1 0 10 1 0 25 0 56 177 0 1 311 chain 40269 chr16 90354753 + 86780810 86781261 LTR7 482 - 0 482 68916 187 0 31 264 chain 12414 chr16 90354753 + 86829376 86829559 MER30 238 - 0 204 150578 45 0 3 31 5 11 24 4 0 6 2 18 66 chain 5012 chr16 90354753 + 86833112 86833212 HAL1-2a_MD 234 + 4 222 195008 25 3 0 8 2 62 38 5 66 19 chain 7544 chr16 90354753 + 86855851 86855967 MER20 218 - 74 188 173908 53 1 0 4 3 0 5 2 4 48 chain 25107 chr16 90354753 + 86865933 86866232 L1P3 4156 - 1339 1638 104243 299 chain 21450 chr16 90354753 + 86877952 86878229 AluSg7 307 - 32 306 122334 61 11 10 72 2 0 131 chain 22758 chr16 90354753 + 86886647 86886927 AluSc 308 + 25 298 116789 267 7 0 6 chain 24941 chr16 90354753 + 86904825 86905412 THE1D 372 + 0 372 105104 13 2 4 34 9 0 109 212 1 17 11 14 91 0 1 56 1 0 32 chain 3312 chr16 90354753 + 86905164 86905204 THE1D 372 + 119 160 218745 4 0 1 36 chain 4476 chr16 90354753 + 86920296 86920347 MER58A 224 + 26 77 201056 51 chain 18433 chr16 90354753 + 86937447 86937818 MSTA 426 + 0 414 131683 24 4 5 64 35 59 49 58 56 39 1 21 97 chain 3604 chr16 90354753 + 86984973 86985292 HAL1-2a_MD 234 + 0 107 213589 17 16 1 23 156 28 15 15 0 12 54 0 11 chain 25689 chr16 90354753 + 87045604 87045901 L1PA6 6164 + 5866 6162 101334 144 1 0 152 chain 4090 chr16 90354753 + 87068846 87068891 MER58A 224 + 47 92 206085 45 chain 38421 chr16 90354753 + 87128693 87129207 MER41A 554 - 0 540 71550 123 1 2 27 0 1 185 9 15 65 5 22 46 0 1 53 chain 44424 chr16 90354753 + 87143739 87144287 MER41A 554 - 0 554 63667 79 1 6 71 0 1 397 chain 23656 chr16 90354753 + 87164014 87164305 AluSx 319 + 10 301 112275 291 chain 9902 chr16 90354753 + 87185791 87185917 MSTB 430 + 261 387 161058 126 chain 31938 chr16 90354753 + 87189036 87189462 L1PA8 5853 + 5435 5853 80954 111 0 1 17 1 0 46 2 0 68 2 1 13 5 3 45 2 1 16 1 0 3 1 0 93 chain 4411 chr16 90354753 + 87197415 87197461 LTR33B 472 + 55 101 201788 46 chain 57313 chr16 90354753 + 87242383 87243074 L1PA7 6471 + 5773 6468 54332 211 1 8 283 15 12 181 chain 4477 chr16 90354753 + 87243732 87243835 HAL1-2a_MD 234 - 94 176 201047 23 9 0 15 3 0 17 8 2 16 3 0 9 chain 4970 chr16 90354753 + 87254217 87254343 MIRc 230 - 10 132 195469 44 52 48 30 chain 22449 chr16 90354753 + 87303212 87303476 AluYf4 310 - 6 271 118255 97 1 2 166 chain 16067 chr16 90354753 + 87321357 87321598 MER30 238 + 0 238 138158 73 29 30 57 4 0 78 chain 3995 chr16 90354753 + 87417656 87417700 tRNA-Met_ 45 - 1 45 207465 44 chain 3413 chr16 90354753 + 87481762 87481801 Tigger4b 360 + 13 52 216892 39 chain 91604 chr16 90354753 + 87543468 87545715 THE1C-int 1605 - 0 1588 39094 86 0 1 303 0 42 210 8 4 87 972 343 73 53 11 8 32 0 188 7 6 24 0 1 119 0 5 77 chain 3535 chr16 90354753 + 87546551 87546620 MLT1D 503 - 393 464 214784 30 18 20 21 chain 4701 chr16 90354753 + 87568704 87568769 MER21C 908 - 841 907 198528 28 3 4 34 chain 38131 chr16 90354753 + 87569832 87570423 MER51A 677 - 0 677 71942 77 1 0 52 24 22 13 2 1 106 1 26 36 0 91 54 11 1 22 17 0 51 0 1 124 chain 29313 chr16 90354753 + 87576435 87576900 MER1A 529 + 42 511 87477 174 25 26 171 49 52 46 chain 3854 chr16 90354753 + 87585216 87585362 MLT1C 463 + 63 223 209574 42 1 2 13 74 87 16 chain 16660 chr16 90354753 + 87607041 87607234 AluY 311 + 104 298 136508 21 1 2 171 chain 3556 chr16 90354753 + 87691426 87691463 MLT1J 494 - 360 397 214413 37 chain 114229 chr16 90354753 + 87751982 87753288 SVA_B 1603 + 0 1602 33019 19 0 28 146 0 144 479 0 40 70 0 78 47 0 5 390 1 2 154 chain 13586 chr16 90354753 + 87809659 87809911 LTR7B 505 - 0 255 146032 25 2 0 26 14 13 89 32 40 23 2 0 39 chain 15024 chr16 90354753 + 87815725 87816008 MER51B 395 + 67 261 141258 22 88 0 156 1 0 16 chain 10346 chr16 90354753 + 87841189 87841337 MER30 238 - 0 171 158919 80 0 6 16 11 28 41 chain 33588 chr16 90354753 + 87850502 87850913 MER41A 554 + 13 427 78261 28 5 7 242 0 1 136 chain 9649 chr16 90354753 + 87949474 87949590 THE1B 368 - 0 115 162356 60 1 0 55 chain 3822 chr16 90354753 + 87972870 87972913 MLT2B3 573 - 0 43 210066 43 chain 37325 chr16 90354753 + 87973968 87974408 LTR15 485 + 0 443 73055 103 0 1 45 0 2 55 0 1 168 1 0 68 chain 28414 chr16 90354753 + 87974410 87974719 AluYk12 309 - 0 309 91521 309 chain 23810 chr16 90354753 + 87980997 87981282 AluSp 311 - 15 300 111416 285 chain 18886 chr16 90354753 + 88140803 88141096 THE1D 372 - 0 276 130405 180 25 26 61 18 0 9 chain 5655 chr16 90354753 + 88213667 88213732 MER41B 635 + 484 549 188522 65 chain 31314 chr16 90354753 + 88248117 88248495 L1PA7 6471 - 5 385 81966 32 0 1 107 9 10 230 chain 99110 chr16 90354753 + 88251046 88252121 L1PA2 6032 - 4 1075 36929 7 4 0 1064 chain 110722 chr16 90354753 + 88252121 88253313 L1PA2 6032 + 3764 4956 34021 1192 chain 25829 chr16 90354753 + 88359716 88360072 THE1B 368 + 0 368 100751 44 0 15 19 1 0 39 0 1 54 4 3 16 10 8 169 chain 25052 chr16 90354753 + 88584336 88584626 AluY 311 + 0 296 104532 120 0 6 170 chain 24674 chr16 90354753 + 88736772 88737062 AluSg 306 + 6 296 106589 290 chain 5366 chr16 90354753 + 88784501 88784568 L1MB7 1623 + 1062 1132 191349 46 0 3 21 chain 3724 chr16 90354753 + 88864646 88864726 HAL1-2a_MD 234 - 151 234 211583 17 4 22 32 15 0 12 chain 26539 chr16 90354753 + 88869454 88869750 AluYf4 310 - 14 310 97891 296 chain 113858 chr16 90354753 + 88917800 88919211 L1P2 5180 + 2 1409 33132 64 1 2 81 1 0 44 2 1 53 1 0 162 0 1 105 1 0 272 1 0 4 4 3 615 chain 48140 chr16 90354753 + 88985274 88985866 LTR10C 591 + 0 582 60370 6 0 4 23 2 0 383 19 6 23 1 0 65 0 2 70 chain 3830 chr16 90354753 + 89012740 89012791 L1MC2 1988 + 1553 1610 209931 8 0 6 43 chain 28633 chr16 90354753 + 89174288 89174642 THE1A 353 - 0 353 90589 242 1 0 111 chain 3355 chr16 90354753 + 89175205 89175249 L1MB7 1623 - 195 239 217960 44 chain 61792 chr16 90354753 + 89200521 89201289 LTR17 781 - 0 781 52000 454 1 0 60 19 32 61 1 2 172 chain 16077 chr16 90354753 + 89214180 89214397 MSTA-int 1630 - 6 228 138126 50 3 4 19 0 1 35 1 0 65 0 4 44 chain 6638 chr16 90354753 + 89216379 89216473 MSTA 426 - 46 161 180176 52 0 1 10 1 21 31 chain 10558 chr16 90354753 + 89309698 89309906 MER50 708 - 21 239 158014 102 0 1 20 62 72 10 1 0 13 chain 23189 chr16 90354753 + 89320740 89321066 L1PA8 5853 - 6 326 114728 86 2 1 19 5 4 42 0 1 4 1 0 8 1 0 73 2 0 47 1 0 35 chain 3995 chr16 90354753 + 89400143 89400188 L1MC1 2226 - 391 436 207450 45 chain 5846 chr16 90354753 + 89411932 89412005 MLT1A1 405 + 307 381 186725 4 0 1 69 chain 15838 chr16 90354753 + 89415699 89415892 AluY 311 + 93 288 138827 33 1 2 148 1 2 10 chain 49279 chr16 90354753 + 89428953 89429554 LTR10C 591 + 0 591 59528 11 0 5 397 22 9 23 1 0 66 1 0 80 chain 11656 chr16 90354753 + 89429758 89429887 L1PA4 6152 + 6016 6151 153664 112 0 6 17 chain 49977 chr16 90354753 + 89458133 89458739 LTR10C 591 + 0 591 59032 413 22 9 23 1 0 66 1 0 80 chain 28413 chr16 90354753 + 89490155 89490563 LTR71A 459 + 0 387 91526 192 50 29 166 chain 53385 chr16 90354753 + 89501428 89502099 LTR12 884 + 0 884 56773 55 0 107 62 0 4 148 2 0 10 0 1 188 0 103 206 chain 23986 chr16 90354753 + 89512102 89512400 AluSp 311 + 2 305 110405 136 1 6 161 chain 28619 chr16 90354753 + 89523365 89523666 AluYa5 310 - 9 310 90658 301 chain 138863 chr16 90354753 + 89528451 89530101 SVA_D 2077 + 0 2075 26338 18 2 0 187 0 11 507 0 3 36 3 0 38 0 40 38 0 310 46 0 4 19 5 77 6 1 0 17 1 0 31 0 1 4 18 17 45 1 0 268 0 3 339 10 0 10 chain 24194 chr16 90354753 + 89596244 89596535 AluSp 311 - 9 300 109253 291 chain 34547 chr16 90354753 + 89673911 89674416 MER9B 498 + 12 493 76837 33 0 1 167 0 3 46 8 11 132 58 26 11 0 1 50 chain 6981 chr16 90354753 + 89677839 89677961 LTR6A 649 - 0 122 177599 24 1 0 26 1 0 13 18 20 39 chain 6977 chr16 90354753 + 89693141 89693242 THE1D 372 + 232 332 177626 68 9 8 24 chain 69890 chr16 90354753 + 89707147 89708075 LTR13_ 950 - 0 950 48442 10 0 5 71 0 4 105 2 1 296 7 6 52 3 1 56 1 0 53 20 23 135 0 4 7 0 5 37 0 6 73 chain 22755 chr16 90354753 + 89708690 89708972 AluSp 311 - 11 300 116803 23 0 2 30 5 10 224 chain 80606 chr16 90354753 + 89732940 89733934 LTR13 1007 - 0 1007 43339 31 2 1 62 0 5 92 0 1 104 0 2 22 0 4 297 4 5 244 0 3 61 2 0 73 chain 71582 chr16 90354753 + 89737815 89738645 L1PA5 6144 - 0 832 47667 138 0 7 10 8 0 507 0 3 167 chain 36104 chr16 90354753 + 89751317 89751783 MER9a3 513 + 0 510 74762 18 0 2 80 10 29 145 15 37 124 0 1 74 chain 8816 chr16 90354753 + 89780651 89780760 MER30 238 + 126 238 166576 70 0 3 39 chain 88515 chr16 90354753 + 89818861 89819866 LTR13 1007 + 0 1007 40177 924 0 2 81 chain 9902 chr16 90354753 + 89824750 89824882 MLT2A1 477 + 0 134 161062 102 6 8 24 chain 86698 chr16 90354753 + 89859016 89860009 LTR13 1007 - 2 1007 40881 244 0 9 337 0 3 412 chain 5412 chr16 90354753 + 89869131 89869206 L1MA5A 2387 + 2071 2145 190873 38 1 0 36 chain 20928 chr16 90354753 + 89870024 89870302 AluSg7 307 - 2 283 124184 76 0 1 66 9 10 20 0 1 107 chain 60547 chr16 90354753 + 89872756 89873422 SVA_D 2077 - 0 664 52547 18 2 0 646 chain 75957 chr16 90354753 + 89885057 89886002 LTR13A 966 + 0 966 45507 68 0 4 34 0 4 33 4 10 105 3 4 237 0 5 196 8 9 257 chain 23696 chr16 90354753 + 89933556 89933835 AluSg7 307 - 13 292 112055 279 chain 24079 chr16 90354753 + 89954720 89955012 AluSp 311 + 7 298 109877 125 2 0 76 0 1 89 chain 22480 chr16 90354753 + 89964242 89964532 AluYc3 301 + 1 287 118111 119 10 11 87 5 0 69 chain 49556 chr16 90354753 + 90004277 90004907 LTR13 1007 - 0 1007 59353 296 25 28 28 1 0 10 0 1 126 0 376 69 2 0 73 chain 3579 chr16 90354753 + 90007402 90007442 L1PB1 5432 - 154 194 213995 40 chain 19313 chr16 90354753 + 90009351 90010466 L1MA3 4352 - 6 519 129205 12 0 11 8 1 0 27 8 6 22 2 0 24 4 0 13 786 185 16 10 6 145 0 1 37 chain 42412 chr16 90354753 + 90013603 90014118 MER9a2 513 + 0 513 66133 438 9 7 68 chain 36763 chr16 90354753 + 90090664 90091149 LTR15 485 - 0 485 73858 49 4 0 79 0 1 4 1 0 35 34 38 279 chain 29634 chr16 90354753 + 90117538 90117980 MER1A 529 + 70 524 86114 12 19 14 54 0 1 98 1 0 38 0 9 128 0 3 19 20 25 53 chain 27430 chr16 90354753 + 90122931 90123418 LTR2B 499 - 0 499 94877 78 22 21 53 15 14 24 0 1 82 0 11 93 2 0 4 6 0 7 48 59 38 1 0 14 chain 3695 chr16 90354753 + 90123418 90123460 LTR10D 510 + 468 510 212011 42 chain 25621 chr16 90354753 + 90138318 90138653 AluY 311 + 0 297 101616 48 38 0 249 chain 21130 chr16 90354753 + 90141009 90141301 AluSp 311 + 10 295 123447 113 0 4 8 17 7 139 2 1 13 chain 47719 chr16 90354753 + 90165703 90166296 LTR10C 591 + 0 591 60675 15 0 5 489 8 0 60 1 2 20 chain 20561 chr16 90354753 + 90201458 90201741 AluSp 311 + 2 286 125426 51 12 14 166 7 6 47 chain 85667 chr16 90354753 + 90213787 90214850 MER11B 1079 - 0 1079 41287 11 5 4 294 8 2 384 0 1 50 0 17 86 0 5 225 chain 25169 chr16 90354753 + 90225007 90225408 MER1A 529 + 90 490 103912 10 5 0 14 9 10 170 10 12 137 27 28 19 chain 7284 chr16 90354753 + 90294422 90294753 MSTB1 431 - 0 326 175560 57 171 174 16 39 30 17 0 1 31 chain 45131 chr17 81195210 + 35621 36134 MER9a2 513 + 0 513 62895 513 chain 38809 chr17 81195210 + 74471 74917 L1PA5 6144 + 5700 6144 71004 432 3 1 11 chain 18453 chr17 81195210 + 117995 118301 Tigger2 2703 + 2363 2629 131633 18 45 0 186 11 13 34 0 3 12 chain 102467 chr17 81195210 + 120491 121662 L1PA4 6152 - 925 2104 36141 867 3 11 301 chain 76897 chr17 81195210 + 121662 122547 L1PA4 6152 + 5257 6141 44974 21 2 1 261 0 1 502 1 0 98 chain 20046 chr17 81195210 + 127849 128199 THE1B 368 + 7 368 126989 104 6 7 51 34 28 17 0 4 6 10 18 53 20 24 49 chain 26762 chr17 81195210 + 196091 196443 THE1B 368 - 0 368 97118 30 0 1 165 7 6 78 0 1 31 1 16 40 chain 6361 chr17 81195210 + 197953 198320 L1MC2 1988 + 1602 1979 182302 9 4 0 44 193 212 38 32 29 12 8 7 4 1 0 22 chain 108960 chr17 81195210 + 211201 212488 LTR12C 1709 + 0 1709 34449 792 9 325 29 0 1 77 0 4 215 0 101 165 chain 30063 chr17 81195210 + 213292 213606 AluYb8 318 + 0 314 84620 314 chain 14884 chr17 81195210 + 280747 281197 THE1C 375 - 0 375 141677 68 10 0 63 19 16 46 195 135 29 2 0 18 chain 28403 chr17 81195210 + 469161 469462 AluYa5 310 + 0 300 91567 132 1 0 168 chain 137873 chr17 81195210 + 474750 476282 SVA_D 2077 + 7 2076 26502 18 5 0 848 0 535 129 4 11 528 chain 288565 chr17 81195210 + 492958 496205 L1HS 6032 - 1345 4584 14118 21 1 0 2021 0 5 89 18 0 244 0 3 167 1 0 414 0 4 271 chain 121515 chr17 81195210 + 496205 497567 L1PA3long 6157 + 4802 6156 30450 409 0 1 833 12 4 103 1 0 4 chain 159505 chr17 81195210 + 501189 503014 SVA_D 2077 + 12 2075 23400 189 0 11 622 40 0 44 0 183 152 4 0 99 0 98 655 10 0 10 chain 542190 chr17 81195210 + 537637 543778 L1PA5 6144 - 0 6141 2472 1740 20 1 1233 1 0 229 0 1 92 0 1 237 0 1 117 0 1 782 1 0 673 0 2 239 0 15 777 chain 24066 chr17 81195210 + 544089 544380 AluSq10 312 - 12 297 109953 7 5 0 160 1 0 118 chain 25656 chr17 81195210 + 621739 622051 AluSp 311 - 0 311 101465 179 1 0 132 chain 2442 chr17 81195210 + 639498 639546 MER5A 189 + 137 186 233797 28 7 8 13 chain 12667 chr17 81195210 + 658227 658569 MER4C 627 + 0 312 149583 28 18 20 27 7 0 9 2 6 23 1 0 47 0 1 43 118 89 19 chain 39953 chr17 81195210 + 659240 659736 LTR10D 510 - 0 510 69391 246 0 2 161 1 2 15 10 21 63 chain 23375 chr17 81195210 + 661892 662187 AluSp 311 + 4 310 113785 30 12 23 253 chain 17611 chr17 81195210 + 683782 684003 AluY 311 + 84 304 133962 41 5 3 131 0 1 44 chain 23544 chr17 81195210 + 724715 725014 AluY 311 + 0 303 112883 109 6 12 11 0 1 157 3 0 13 chain 48702 chr17 81195210 + 732716 733339 L1PA8 5853 - 9 625 59955 83 2 1 16 1 0 53 5 4 8 2 1 70 2 0 43 2 1 336 chain 34558 chr17 81195210 + 749695 750185 LTR10D 510 - 24 510 76818 249 1 0 50 1 0 4 0 2 53 0 1 19 8 9 13 23 17 69 chain 14862 chr17 81195210 + 827487 827691 AluSq2 311 - 21 226 141746 128 21 20 8 0 2 47 chain 18339 chr17 81195210 + 848669 848887 AluY 311 + 82 301 131958 44 1 0 142 1 3 30 chain 26163 chr17 81195210 + 858854 859153 AluY 311 + 0 294 99353 118 4 0 8 1 0 168 chain 3737 chr17 81195210 + 869435 869583 MER30 238 + 0 162 147058 18 12 13 76 9 22 33 chain 24362 chr17 81195210 + 869590 869885 AluSp 311 - 15 310 108308 295 chain 1667 chr17 81195210 + 869896 869962 MER30 238 + 166 232 147058 66 chain 81205 chr17 81195210 + 885029 886016 LTR13 1007 + 0 1007 43084 381 2 3 62 1 0 49 17 21 140 0 10 149 0 1 93 0 5 93 chain 25727 chr17 81195210 + 895156 895445 AluY 311 + 4 294 101183 122 0 1 167 chain 17192 chr17 81195210 + 900854 901056 AluY 311 + 83 287 135054 49 0 1 103 0 1 50 chain 25315 chr17 81195210 + 928092 928378 AluYf4 310 + 15 299 103147 49 2 0 235 chain 7034 chr17 81195210 + 1032408 1032515 L1PA8 5853 + 5656 5760 177224 22 2 1 11 1 0 50 2 1 19 chain 3854 chr17 81195210 + 1042766 1042844 LTR61 567 - 476 566 209567 25 0 11 18 17 18 18 chain 4467 chr17 81195210 + 1054181 1054235 MIR 256 + 66 120 201142 54 chain 24009 chr17 81195210 + 1098824 1099109 AluY 311 + 8 294 110273 120 1 2 164 chain 56681 chr17 81195210 + 1118815 1119485 SVA_B 1603 + 303 1603 54731 121 0 630 186 3 1 6 0 2 47 1 0 36 0 1 270 chain 126167 chr17 81195210 + 1149818 1151244 SVA_D 2077 - 0 2077 29049 628 1 0 4 0 226 84 0 389 76 0 1 22 0 40 586 4 0 21 chain 22714 chr17 81195210 + 1274015 1274313 AluY 311 + 8 301 117013 16 1 0 84 1 0 14 6 4 94 0 1 74 2 0 6 chain 4436 chr17 81195210 + 1276598 1276650 Tigger1 2417 - 2159 2211 201511 52 chain 128521 chr17 81195210 + 1305938 1307355 SVA_D 2077 - 0 2067 28446 18 2 0 621 0 535 173 0 77 19 0 40 584 chain 10717 chr17 81195210 + 1334736 1334865 AluY 311 + 2 132 157335 5 0 1 124 chain 23363 chr17 81195210 + 1347837 1348151 AluSp 311 + 1 306 113852 55 5 1 63 6 0 25 5 6 155 chain 23784 chr17 81195210 + 1353525 1353821 AluY 311 + 5 298 111565 104 0 1 22 0 1 123 5 0 42 chain 22392 chr17 81195210 + 1363870 1364166 AluSp 311 - 17 311 118525 143 21 19 132 chain 28636 chr17 81195210 + 1425363 1425664 AluYb8 318 - 17 318 90578 301 chain 11644 chr17 81195210 + 1434690 1434833 AluYc 301 + 138 279 153719 133 2 0 8 chain 31736 chr17 81195210 + 1468546 1468922 L1PA5 6144 + 5766 6144 81268 230 0 1 128 0 1 18 chain 28508 chr17 81195210 + 1473778 1474079 AluYa5 310 - 9 310 91156 301 chain 24817 chr17 81195210 + 1487825 1488142 AluY 311 + 0 311 105786 109 1 0 16 6 1 185 chain 20045 chr17 81195210 + 1502360 1502649 AluSc 308 + 0 296 126991 64 0 8 54 1 0 10 5 8 5 1 0 5 2 0 37 4 4 101 chain 36344 chr17 81195210 + 1545480 1545886 L1PA2 6032 - 3 409 74438 406 chain 22587 chr17 81195210 + 1560985 1561284 AluY 311 + 11 303 117647 42 11 5 65 1 0 10 1 0 148 0 1 21 chain 20273 chr17 81195210 + 1569180 1569472 AluY 311 + 8 295 126301 45 16 13 46 4 5 15 4 0 48 0 1 114 chain 145524 chr17 81195210 + 1591891 1593902 SVA_F 1814 - 26 1814 25250 620 258 0 206 99 17 57 0 1 14 0 40 201 0 76 556 chain 16200 chr17 81195210 + 1592511 1592769 SVA_F 1814 - 695 936 103206 157 46 33 4 1 0 44 3 0 3 chain 3453 chr17 81195210 + 1592668 1592714 SVA_F 1814 - 725 771 113552 46 chain 4062 chr17 81195210 + 1592975 1593073 SVA_F 1814 - 676 726 130633 44 48 0 6 chain 3914 chr17 81195210 + 1593019 1593067 SVA_F 1814 - 798 847 184312 36 1 2 11 chain 24735 chr17 81195210 + 1622561 1622872 AluY 311 + 2 310 106247 127 1 2 33 1 0 57 1 0 84 2 0 5 chain 24211 chr17 81195210 + 1654779 1655070 AluY 311 + 13 305 109147 113 0 1 178 chain 26863 chr17 81195210 + 1661125 1661426 AluYf4 310 - 9 310 96764 301 chain 25381 chr17 81195210 + 1721066 1721359 AluY 311 + 0 301 102772 22 0 7 103 0 1 168 chain 6556 chr17 81195210 + 1727741 1727900 THE1C 375 + 0 162 180809 42 70 73 47 chain 22557 chr17 81195210 + 1738756 1739079 HSMAR2 1300 - 966 1292 117778 14 0 2 48 21 24 182 2 0 56 chain 14918 chr17 81195210 + 1751895 1752104 AluSg7 307 - 46 254 141581 105 25 24 79 chain 21997 chr17 81195210 + 1827188 1827481 AluSp 311 - 22 299 120243 23 2 1 137 16 1 115 chain 23044 chr17 81195210 + 1828761 1829044 AluSg4 309 - 9 289 115429 11 2 0 158 1 0 111 chain 22062 chr17 81195210 + 1831848 1832123 AluSq4 311 + 10 287 119960 116 0 1 92 1 2 66 chain 12898 chr17 81195210 + 1856709 1856864 L1PA5 6144 + 5996 6144 148637 142 7 0 6 chain 3207 chr17 81195210 + 2024558 2024610 L1ME2z 1083 + 762 812 220783 7 0 4 14 6 0 25 chain 27360 chr17 81195210 + 2033275 2033582 AluYb8 318 + 4 310 95077 114 1 0 192 chain 26334 chr17 81195210 + 2045895 2046206 AluSp 311 + 0 306 98674 128 5 0 178 chain 5158 chr17 81195210 + 2068743 2068833 Tigger4a 237 - 15 121 193471 42 0 18 9 14 12 25 chain 3711 chr17 81195210 + 2092238 2092280 5S 121 + 0 42 211773 42 chain 13139 chr17 81195210 + 2103656 2103820 L1PA5 6144 - 2 167 147686 144 1 2 19 chain 55499 chr17 81195210 + 2158830 2159475 SVA_D 2077 + 1410 2060 55415 30 9 13 128 0 1 478 chain 24703 chr17 81195210 + 2172225 2172535 AluY 311 + 9 304 106413 123 0 1 41 16 0 130 chain 25267 chr17 81195210 + 2180079 2180374 AluSp 311 - 16 311 103382 295 chain 25303 chr17 81195210 + 2231932 2232241 AluY 311 + 4 310 103209 128 0 1 65 15 11 101 chain 24088 chr17 81195210 + 2233216 2233514 AluSp 311 - 16 311 109809 15 5 4 236 2 0 40 chain 4923 chr17 81195210 + 2260660 2260783 L1PB1 5432 + 5064 5179 196007 37 14 14 23 1 0 5 21 16 9 2 0 11 chain 3677 chr17 81195210 + 2274820 2274933 MIRb 242 + 31 136 212274 19 58 50 36 chain 28397 chr17 81195210 + 2327409 2327706 AluYa5 310 - 13 310 91597 297 chain 23827 chr17 81195210 + 2329754 2330046 AluSc5 308 + 12 303 111323 245 2 1 45 chain 70294 chr17 81195210 + 2349924 2350737 SVA_D 2077 + 55 898 48272 103 1 31 19 2 1 508 1 2 179 chain 18285 chr17 81195210 + 2350773 2350993 SVA_F 1814 + 664 1116 132114 69 0 233 35 1 0 115 chain 86028 chr17 81195210 + 2351062 2352053 SVA_E 1901 + 804 1901 41143 8 1 0 5 1 0 63 0 1 4 18 43 30 2 1 136 1 0 47 7 91 668 chain 3538 chr17 81195210 + 2352437 2352660 L1ME1 1623 + 133 453 214740 17 33 63 17 113 119 34 0 61 9 chain 8379 chr17 81195210 + 2398235 2398354 Tigger1 2417 + 1453 1585 168974 17 0 2 6 3 14 93 chain 158522 chr17 81195210 + 2409547 2411432 SVA_D 2077 + 14 2074 23528 41 12 0 497 0 40 95 0 40 181 0 185 295 0 1 4 9 8 22 78 0 651 chain 5641 chr17 81195210 + 2410703 2410781 SVA_D 2077 + 1120 1198 79359 78 chain 5597 chr17 81195210 + 2434952 2435016 LTR12C 1709 - 991 1055 189116 64 chain 1601 chr17 81195210 + 2435080 2435127 LTR12C 1709 - 800 847 187256 47 chain 10636 chr17 81195210 + 2435160 2435299 LTR12C 1709 - 601 818 157668 111 1 79 27 chain 37746 chr17 81195210 + 2450842 2451425 LTR2 463 + 0 463 72490 129 7 10 241 131 8 75 chain 9059 chr17 81195210 + 2451219 2451329 SVA_E 1901 - 1 110 165262 19 1 0 90 chain 3007 chr17 81195210 + 2467956 2467989 U2 167 - 134 167 224882 33 chain 24570 chr17 81195210 + 2476565 2476879 AluSp 311 + 0 303 107138 32 8 1 261 4 0 9 chain 16219 chr17 81195210 + 2485143 2485347 AluY 311 + 100 305 137697 32 11 12 161 chain 20331 chr17 81195210 + 2485842 2486110 AluSp 311 - 5 267 126136 6 7 0 188 3 4 64 chain 11500 chr17 81195210 + 2513828 2514004 MER30 238 - 5 203 154300 40 3 0 34 0 6 23 5 0 8 6 30 57 chain 117637 chr17 81195210 + 2525466 2527674 THE1A-int 1579 - 0 1579 31914 36 0 1 444 5 6 64 8 16 12 0 1 9 6 5 371 6 3 123 682 42 22 15 16 292 0 3 113 chain 203320 chr17 81195210 + 2531246 2534136 L1PBa 3878 - 76 2928 18972 9 1 0 8 9 8 5 1 0 14 16 10 11 2 0 21 2 1 184 7 12 114 6 8 77 6 1 99 18 3 168 0 1 287 2 1 24 0 3 19 10 0 124 0 4 311 6 18 487 43 42 67 6 6 24 49 26 399 0 1 79 7 8 168 chain 57654 chr17 81195210 + 2556050 2556723 L1PA5 6144 + 5472 6144 54158 168 2 0 486 1 0 4 1 3 11 chain 106301 chr17 81195210 + 2563540 2564938 L1PA8 5853 - 0 1475 35184 90 8 7 13 7 6 49 4 1 10 1 0 22 1 0 47 2 0 36 0 3 5 4 0 168 0 2 381 3 85 149 0 7 348 4 0 46 chain 22257 chr17 81195210 + 2566133 2566407 AluSp 311 + 11 282 119089 70 3 0 201 chain 23762 chr17 81195210 + 2620783 2621064 AluY 311 + 1 285 111689 5 0 2 124 0 1 152 chain 27060 chr17 81195210 + 2636554 2636851 AluSp 311 - 13 310 96077 297 chain 25160 chr17 81195210 + 2641784 2642077 AluYc3 301 + 0 296 103958 113 1 2 73 0 1 75 0 1 31 chain 24292 chr17 81195210 + 2642379 2642663 AluSc5 308 + 0 283 108692 131 1 0 152 chain 26018 chr17 81195210 + 2672575 2672865 AluY 311 + 8 299 99952 124 0 1 166 chain 23804 chr17 81195210 + 2683353 2683636 AluSp 311 - 21 303 111455 158 1 0 124 chain 13128 chr17 81195210 + 2726006 2726158 L1PA4 6152 - 0 157 147730 6 0 5 146 chain 21031 chr17 81195210 + 2736765 2737010 AluY 311 + 63 309 123805 69 0 1 176 chain 25930 chr17 81195210 + 2820563 2820863 AluSp 311 - 11 311 100300 300 chain 25652 chr17 81195210 + 2865184 2865484 AluSp 311 - 2 300 101485 24 2 0 274 chain 25327 chr17 81195210 + 2877353 2877654 AluYk4 311 + 0 293 103086 126 8 0 167 chain 7496 chr17 81195210 + 2892425 2892614 L1MD2 1676 - 589 774 174175 17 1 0 3 3 0 9 7 8 12 56 55 81 chain 4990 chr17 81195210 + 2924661 2924722 L1MA4 2864 - 201 262 195240 61 chain 28909 chr17 81195210 + 2926945 2927317 L1PA8 5853 - 0 365 89420 93 1 0 19 2 1 47 1 0 14 1 0 69 2 0 48 2 1 73 chain 4683 chr17 81195210 + 2931609 2931717 MER20 218 + 44 161 198715 23 15 17 33 17 24 20 chain 61561 chr17 81195210 + 2948840 2949582 L1PA7 6471 - 3 755 52087 9 2 0 113 0 1 31 1 0 183 1 0 200 0 13 202 chain 29786 chr17 81195210 + 2958726 2959107 L1PA16 3655 - 1863 2248 85526 31 0 4 47 0 1 297 1 0 5 chain 50285 chr17 81195210 + 2960618 2961547 L1PB1 5432 - 12 871 58798 29 1 0 21 1 0 24 2 0 14 8 5 19 63 50 21 22 20 47 3 1 11 16 11 9 1 0 24 3 0 6 5 8 47 16 16 81 0 1 184 38 0 150 8 5 55 chain 23435 chr17 81195210 + 2980140 2980413 L1PA7 6471 - 2 275 113447 273 chain 14891 chr17 81195210 + 2986840 2987167 L1PB1 5432 - 10 317 141655 18 1 0 10 5 6 18 1 0 24 2 0 13 35 31 6 2 0 16 1 0 44 1 0 15 2 1 50 31 24 8 1 0 23 chain 36346 chr17 81195210 + 2991725 2992182 LTR2 463 - 2 463 74437 86 14 15 302 0 3 55 chain 10749 chr17 81195210 + 3000546 3000679 L1PB 1623 + 945 1078 157201 133 chain 256311 chr17 81195210 + 3001505 3005227 L1PA10 4194 + 175 3852 15916 14 2 0 9 3 0 9 2 0 9 52 44 12 87 70 5 3 0 9 1 0 5 1 0 13 1 0 6 1 0 15 13 0 11 1 0 67 23 14 28 43 43 345 19 20 115 0 1 166 3 5 255 24 24 66 0 3 206 10 0 66 0 4 122 32 23 36 0 4 93 16 22 88 0 4 342 0 4 38 3 2 17 0 1 131 3 4 673 0 3 205 0 2 45 6 5 7 0 1 10 0 1 135 chain 132861 chr17 81195210 + 3015148 3016930 SVA_D 2077 - 4 2077 27451 75 8 0 57 0 20 469 3 7 8 0 49 41 3 0 108 1 54 15 21 331 82 39 0 147 117 0 381 0 1 171 0 3 6 1 25 12 3 0 6 3 0 5 chain 3582 chr17 81195210 + 3016039 3016078 SVA_D 2077 - 1553 1592 155770 39 chain 9143 chr17 81195210 + 3016243 3016342 SVA_D 2077 - 1484 1583 154860 99 chain 24024 chr17 81195210 + 3022696 3022968 L1PA5 6144 - 12 291 110194 136 0 7 136 chain 18630 chr17 81195210 + 3027656 3027925 L1PA8 5853 + 5592 5853 131135 16 2 0 74 17 13 49 2 1 15 2 1 92 chain 29661 chr17 81195210 + 3033636 3033979 L1PA3long 6157 + 5791 6157 86023 32 0 1 196 1 0 6 0 23 108 chain 11448 chr17 81195210 + 3038577 3038800 L1MA3 4352 + 4117 4344 154505 35 33 39 10 0 4 54 2 0 23 8 6 29 1 0 11 1 0 16 chain 355030 chr17 81195210 + 3040629 3045369 L1PA7 6471 - 1 4747 11475 331 1 0 522 0 3 11 7 11 119 7 16 134 0 2 23 0 1 206 8 0 68 28 4 38 1 0 19 1 0 143 0 1 297 1 15 172 0 1 115 0 5 334 35 32 211 5 0 27 1 2 27 3 0 6 0 3 35 0 1 5 10 1 35 1 2 5 1 0 387 0 4 23 0 1 158 0 3 12 6 10 24 18 20 10 2 0 196 1 3 47 14 9 42 3 1 108 0 3 141 1 0 153 12 14 89 1 0 27 45 46 219 0 5 8 chain 546282 chr17 81195210 + 3050660 3056703 L1PA2 6032 - 0 6031 1911 2622 4 0 1783 1 0 62 21 0 640 0 13 600 0 1 55 2 1 183 0 1 70 chain 52106 chr17 81195210 + 3062224 3062815 L1PA7 6471 + 5871 6461 57560 266 1 0 324 chain 554711 chr17 81195210 + 3079824 3085851 L1PA2 6032 + 0 6032 860 1630 1 0 399 0 6 3997 chain 10274 chr17 81195210 + 3089889 3090030 L1PA8 5853 + 5716 5853 159257 19 2 0 9 2 1 15 1 0 93 chain 12610 chr17 81195210 + 3090386 3090543 L1PA5 6144 - 4 164 149808 44 3 6 110 chain 41537 chr17 81195210 + 3093120 3093612 LTR19B 566 - 70 566 67239 219 1 5 272 chain 3393 chr17 81195210 + 3098534 3098573 MLT1J2 417 - 319 358 217248 39 chain 24349 chr17 81195210 + 3099032 3099319 AluY 311 + 21 310 108379 78 0 1 32 0 1 177 chain 5989 chr17 81195210 + 3106309 3106461 L1MA8 2339 + 2121 2263 185336 36 10 6 31 44 39 24 1 0 6 chain 4758 chr17 81195210 + 3109225 3109285 L1PA8A 6298 + 6229 6289 197829 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3157372 L1M1 2793 + 1007 1134 136082 127 chain 41910 chr17 81195210 + 3158191 3158676 L1PA7 6471 + 5825 6310 66745 485 chain 14339 chr17 81195210 + 3158681 3158841 L1PA7 6471 + 6310 6470 143428 160 chain 40009 chr17 81195210 + 3160702 3161338 L1PB1 5432 - 8 615 69308 4 1 0 16 1 0 13 1 0 16 0 1 4 1 0 24 2 0 14 8 5 19 10 5 7 3 0 15 2 1 43 1 0 16 2 1 53 2 0 9 16 11 9 1 0 24 1 0 9 1 2 198 2 0 88 chain 32784 chr17 81195210 + 3170571 3171062 LTR12F 595 + 16 595 79557 20 0 1 35 0 143 20 36 0 5 18 0 84 2 0 68 2 0 125 0 2 76 chain 90301 chr17 81195210 + 3176615 3177589 L1PA2 6032 - 1795 2769 39508 974 chain 166792 chr17 81195210 + 3177589 3179399 L1PA2 6032 + 4222 6030 22421 1797 2 0 11 chain 96414 chr17 81195210 + 3189224 3190369 L1PA7 6471 - 14 1160 37702 644 10 0 111 0 2 76 0 4 145 1 6 158 chain 106198 chr17 81195210 + 3203986 3205181 L1PA5 6144 - 1 1196 35211 10 3 1 983 0 2 199 chain 56145 chr17 81195210 + 3205181 3205839 L1PA5 6144 + 4300 4950 54904 29 24 0 542 0 16 63 chain 482638 chr17 81195210 + 3222667 3228146 L1PA4 6152 - 0 5498 7638 6 4 0 190 0 1 314 2 0 2188 0 8 142 2 0 16 5 7 80 0 1 613 0 2 194 0 4 150 0 9 981 2 1 414 0 1 176 chain 1286 chr17 81195210 + 3229698 3229824 MER11A 1151 + 0 126 46318 126 chain 548564 chr17 81195210 + 3229848 3236020 L1PA2 6032 - 2 6031 1633 511 2 0 413 0 1 4 1 0 1304 153 0 1547 0 1 58 1 0 611 2 0 1003 0 4 251 11 21 300 chain 9887 chr17 81195210 + 3236020 3236989 MER11A 1151 + 126 1151 46318 101 0 4 63 0 11 21 0 2 34 0 1 27 0 1 158 11 10 98 2 0 25 6 9 12 1 2 40 0 4 65 0 1 47 3 0 9 0 35 179 1 0 66 chain 501110 chr17 81195210 + 3240585 3246685 L1PA5 6144 - 15 6143 6783 758 0 1 71 2 5 480 0 1 121 1 0 4 0 1 95 6 10 453 5 4 130 7 0 43 0 2 267 0 2 429 1 7 69 1 0 397 0 4 121 1 0 342 1 0 182 0 3 958 13 4 221 24 0 17 0 4 55 0 2 132 0 1 221 0 27 63 5 4 136 1 0 4 4 5 59 1 0 80 12 26 107 chain 4095 chr17 81195210 + 3250481 3250537 L1MA2 4263 - 588 643 206003 13 2 1 41 chain 102144 chr17 81195210 + 3250540 3251679 L1PA3long 6157 - 0 1139 36208 1139 chain 328953 chr17 81195210 + 3251679 3255337 L1HS 6032 + 1219 4878 12237 375 1 0 2400 0 2 882 chain 263301 chr17 81195210 + 3262985 3265969 L1PA5 6144 - 269 3259 15518 574 0 4 946 0 4 305 1 0 840 1 0 317 chain 210360 chr17 81195210 + 3270515 3273928 L1PB1 5432 - 2 3071 18482 4 1 0 4 1 0 10 4 1 10 1 0 10 2 1 20 5 4 21 1 0 13 1 0 5 3 1 13 9 0 16 23 18 43 1 0 15 2 1 51 3 1 9 10 6 7 1 0 8 1 0 22 39 0 11 6 7 239 0 8 168 0 3 51 0 1 642 1 0 47 3 0 6 12 15 107 0 1 75 7 0 6 7 15 348 1 2 149 4 6 13 0 2 15 1 2 244 329 36 62 1 0 5 5 3 9 1 0 40 0 2 46 6 7 175 1 2 52 6 8 114 0 2 9 chain 172942 chr17 81195210 + 3273928 3276110 SVA_D 2077 - 7 2018 21717 331 0 10 248 127 0 45 98 0 211 1 0 134 0 48 89 1 38 74 40 0 783 chain 8800 chr17 81195210 + 3274507 3274634 SVA_D 2077 - 821 948 63454 127 chain 6790 chr17 81195210 + 3274679 3274777 SVA_D 2077 - 993 1093 63454 46 0 2 52 chain 13412 chr17 81195210 + 3278030 3278300 L1PB1 5432 - 15 262 146668 11 16 14 22 1 0 23 18 15 5 2 0 16 9 0 11 2 0 4 1 0 16 1 0 44 1 0 15 2 1 50 chain 31241 chr17 81195210 + 3304084 3304481 L1PA8 5853 - 6 396 82095 87 2 1 18 7 6 47 2 1 10 1 0 69 2 0 46 1 0 105 chain 7197 chr17 81195210 + 3307245 3307324 L1HS 6032 + 5942 6021 176077 79 chain 125846 chr17 81195210 + 3328896 3330468 HERVL-int 5654 - 3328 4915 29144 163 7 8 62 4 13 1271 8 13 57 chain 54390 chr17 81195210 + 3335068 3335665 L1PA3long 6157 + 5560 6157 56104 597 chain 166197 chr17 81195210 + 3357593 3359417 L1PA3long 6157 - 0 1828 22495 15 3 0 92 0 1 737 0 5 725 0 1 252 chain 156873 chr17 81195210 + 3367298 3369090 SVA_D 2077 + 58 2076 23744 170 0 1 667 16 158 6 0 1 25 2 0 144 0 78 38 0 1 8 1 0 9 0 1 14 0 12 9 4 0 12 0 1 353 1 0 304 3 0 6 chain 67716 chr17 81195210 + 3411459 3412193 L1PA3long 6157 + 5412 6146 49361 734 chain 80774 chr17 81195210 + 3412511 3413447 L1PA8A 6298 - 7 947 43282 172 0 1 627 0 3 137 chain 11527 chr17 81195210 + 3423973 3424099 L1PA5 6144 + 6011 6137 154188 126 chain 21611 chr17 81195210 + 3449463 3449741 AluSx 319 + 10 288 121729 127 8 5 7 0 3 136 chain 120167 chr17 81195210 + 3466972 3468357 SVA_D 2077 - 2 2077 31002 9 6 0 368 0 2 243 7 10 17 0 575 218 2 82 57 0 40 228 0 1 200 5 0 25 chain 32646 chr17 81195210 + 3472199 3472571 L1PA5 6144 + 5773 6144 79765 34 1 0 337 chain 25043 chr17 81195210 + 3519144 3519445 AluSg7 307 - 5 307 104582 176 0 1 125 chain 11054 chr17 81195210 + 3521413 3521543 AluSg7 307 - 22 152 155996 130 chain 11133 chr17 81195210 + 3521560 3521690 AluSg7 307 - 169 299 155687 130 chain 24166 chr17 81195210 + 3523860 3524152 AluSg7 307 - 13 307 109396 36 1 2 124 0 1 131 chain 52779 chr17 81195210 + 3537000 3537574 SVA_D 2077 + 1501 2074 57146 557 1 0 16 chain 23781 chr17 81195210 + 3577320 3577641 AluY 311 + 0 309 111588 19 7 1 112 0 1 11 1 4 102 5 0 38 2 0 12 3 0 9 chain 25195 chr17 81195210 + 3604706 3605013 AluSp 311 + 2 307 103761 243 2 0 62 chain 56383 chr17 81195210 + 3605342 3606079 LTR12 884 + 0 872 54912 25 1 0 30 0 41 211 1 2 31 1 2 36 2 0 181 0 103 99 9 1 110 chain 23145 chr17 81195210 + 3615955 3616249 AluSx1 309 + 0 295 114915 12 3 0 79 0 4 200 chain 21912 chr17 81195210 + 3639176 3639454 AluSg7 307 + 21 298 120585 43 2 0 67 1 2 165 chain 20260 chr17 81195210 + 3730057 3730299 AluY 311 + 32 276 126344 100 0 1 57 0 3 43 7 5 35 chain 11055 chr17 81195210 + 3748113 3748246 AluSp 311 + 167 301 155989 105 0 1 28 chain 132781 chr17 81195210 + 3756900 3758383 SVA_D 2077 + 0 2071 27462 13 5 0 12 5 0 203 0 1 532 0 40 77 0 535 510 0 20 56 0 2 70 chain 7122 chr17 81195210 + 3758396 3759734 L1MC2 1988 + 1578 1981 176602 82 48 52 15 1154 216 4 1 0 34 chain 2814 chr17 81195210 + 3762634 3762675 MER21B 843 + 777 815 228576 31 3 0 7 chain 3097 chr17 81195210 + 3826024 3826059 MER45A 178 + 134 169 222988 35 chain 3900 chr17 81195210 + 3873717 3873762 MER45B 1037 + 991 1036 208851 45 chain 3442 chr17 81195210 + 3895632 3895677 MER65A 464 - 0 44 216343 40 1 0 4 chain 14741 chr17 81195210 + 3900662 3900822 SVA_E 1901 - 0 160 142137 160 chain 23880 chr17 81195210 + 3906208 3906492 AluSp 311 - 17 301 111026 284 chain 2902 chr17 81195210 + 3950625 3950656 L1MC4 1079 + 232 263 227007 31 chain 11894 chr17 81195210 + 3968172 3968327 L1PA5 6144 + 5990 6143 152629 11 6 0 127 1 5 10 chain 5596 chr17 81195210 + 4001034 4001101 LTR37A 408 + 268 335 189126 67 chain 8927 chr17 81195210 + 4023699 4023807 MLT2A2 560 - 0 108 166000 108 chain 7341 chr17 81195210 + 4096062 4096158 HY3 101 + 0 100 175143 31 1 5 64 chain 28401 chr17 81195210 + 4105711 4106014 AluYg6 310 + 0 303 91577 303 chain 24818 chr17 81195210 + 4108759 4109049 AluY 311 + 4 295 105778 128 0 1 162 chain 24601 chr17 81195210 + 4112067 4112367 AluSp 311 + 0 295 106990 59 4 0 48 1 0 188 chain 19233 chr17 81195210 + 4149071 4149324 AluSx4 309 + 10 266 129428 62 12 15 179 chain 3930 chr17 81195210 + 4151320 4151403 MIR 256 + 36 118 208413 15 15 16 33 3 1 17 chain 5510 chr17 81195210 + 4185070 4185139 U3 216 - 146 216 189939 19 0 1 50 chain 23709 chr17 81195210 + 4215749 4216015 AluY 311 + 40 307 111984 86 0 1 180 chain 23785 chr17 81195210 + 4219095 4219389 AluYc3 301 - 12 293 111563 17 6 0 157 11 4 103 chain 18755 chr17 81195210 + 4242917 4243157 AluSp 311 + 53 295 130813 83 4 6 153 chain 8608 chr17 81195210 + 4250470 4250611 Tigger4b 360 - 0 147 167687 37 17 26 59 3 0 25 chain 25204 chr17 81195210 + 4274596 4274896 AluSq10 312 + 2 300 103722 292 2 0 6 chain 23443 chr17 81195210 + 4299742 4300034 AluSq 315 + 0 301 113410 7 0 1 71 0 6 43 0 1 52 0 1 119 chain 5906 chr17 81195210 + 4302119 4302206 LTR8 732 - 18 107 186120 24 7 9 56 chain 4177 chr17 81195210 + 4429013 4429082 MIRb 242 + 67 140 204866 13 6 10 50 chain 90836 chr17 81195210 + 4481332 4482377 SVA_D 2077 - 227 2077 39345 152 0 2 258 0 535 136 0 272 269 0 1 200 5 0 25 chain 6273 chr17 81195210 + 4505327 4505513 Tigger4a 237 - 9 206 182985 18 1 0 19 0 7 8 0 4 23 5 0 20 75 81 17 chain 22541 chr17 81195210 + 4518044 4518311 AluSp 311 - 36 300 117842 148 5 2 114 chain 23068 chr17 81195210 + 4558201 4558503 AluSp 311 + 11 311 115310 163 4 3 105 1 0 29 chain 89240 chr17 81195210 + 4558945 4560349 LTR12C 1709 - 9 1709 39913 63 17 16 48 2 1 61 0 4 29 5 6 8 0 11 9 3 5 65 108 89 57 44 13 97 3 1 5 1 0 42 0 2 60 0 278 106 8 0 12 11 12 131 2 0 5 1 0 83 0 43 40 0 1 255 0 19 23 chain 24487 chr17 81195210 + 4560590 4560882 AluY 311 + 1 298 107617 117 1 0 19 0 7 133 1 0 21 chain 12370 chr17 81195210 + 4591204 4591342 L1PB1 5432 + 3356 3494 150752 138 chain 22308 chr17 81195210 + 4602401 4602690 AluY 311 + 8 298 118883 31 5 6 89 0 1 39 2 1 123 chain 83103 chr17 81195210 + 4611518 4612891 LTR12C 1709 - 24 1709 42288 60 13 12 49 0 101 22 0 1 30 98 0 58 72 71 25 0 1 27 11 4 11 24 0 95 3 1 5 1 0 126 0 278 128 10 14 101 2 1 83 0 43 42 1 6 8 1 5 14 0 1 219 10 19 24 chain 23590 chr17 81195210 + 4627322 4627628 AluSq 315 + 0 300 112631 24 7 0 112 9 10 154 chain 18935 chr17 81195210 + 4634205 4634456 AluSx1 309 + 14 268 130273 58 0 2 151 16 17 26 chain 24270 chr17 81195210 + 4652609 4652895 AluY 311 + 16 297 108845 111 5 0 170 chain 3271 chr17 81195210 + 4662945 4662988 L1MC2 1988 - 7 49 219558 35 1 0 7 chain 13376 chr17 81195210 + 4667743 4667909 THE1C 375 + 209 375 146797 118 0 1 22 1 0 25 chain 25314 chr17 81195210 + 4668426 4668729 AluSp 311 - 6 311 103152 40 0 3 85 1 0 177 chain 22755 chr17 81195210 + 4672742 4673015 AluSp 311 + 20 295 116802 36 0 2 237 chain 29453 chr17 81195210 + 4697942 4698257 AluYb8 318 + 0 313 86827 132 2 0 181 chain 4538 chr17 81195210 + 4704937 4705030 MER45A 178 + 18 109 200363 17 20 19 9 1 0 46 chain 23233 chr17 81195210 + 4723246 4723527 AluSp 311 - 17 300 114527 80 6 8 195 chain 27103 chr17 81195210 + 4723866 4724170 AluYf4 310 - 6 310 95935 304 chain 25508 chr17 81195210 + 4729900 4730208 AluSp 311 - 0 309 102184 42 4 6 138 1 0 123 chain 26188 chr17 81195210 + 4745236 4745532 AluY 311 + 2 297 99247 131 2 0 147 0 1 16 chain 8713 chr17 81195210 + 4768918 4769195 AluJo 314 + 21 293 167126 21 9 151 18 147 0 82 chain 20852 chr17 81195210 + 4770089 4770369 AluY 311 + 3 284 124451 124 1 2 99 17 16 31 0 1 8 chain 25828 chr17 81195210 + 4810576 4810885 AluY 311 + 0 306 100753 124 4 0 135 1 2 45 chain 25394 chr17 81195210 + 4813447 4813739 AluY 311 + 10 301 102712 118 1 2 153 2 0 18 chain 30102 chr17 81195210 + 4828535 4828852 AluYb8 318 - 0 317 84487 317 chain 23445 chr17 81195210 + 4869165 4869432 AluSc 308 - 28 295 113403 267 chain 6241 chr17 81195210 + 4893811 4893894 MER30 238 - 2 82 183241 4 1 0 20 0 1 21 3 0 34 chain 25264 chr17 81195210 + 4897814 4898108 AluSx4 309 + 10 304 103397 294 chain 22740 chr17 81195210 + 4921690 4922022 AluSp 311 + 11 306 116868 53 23 0 148 1 2 42 18 3 47 chain 22210 chr17 81195210 + 4934483 4934751 AluSx 319 + 11 281 119300 52 0 2 216 chain 22868 chr17 81195210 + 4961439 4961720 AluSp 311 - 17 297 116238 162 1 0 118 chain 17543 chr17 81195210 + 4967993 4968203 AluSp 311 + 86 295 134147 46 1 0 163 chain 75990 chr17 81195210 + 4977974 4978941 LTR5_Hs 974 - 0 974 45489 103 20 18 19 8 15 163 1 0 62 0 1 125 0 1 177 0 1 289 chain 29054 chr17 81195210 + 4987562 4987869 AluYa5 310 - 3 310 88746 307 chain 22555 chr17 81195210 + 5003325 5003613 AluSp 311 + 1 295 117784 21 0 12 77 1 0 177 5 0 7 chain 25023 chr17 81195210 + 5008226 5008523 AluY 311 + 0 301 104665 73 0 3 32 0 1 192 chain 66274 chr17 81195210 + 5046339 5047064 SVA_D 2077 + 1352 2077 49967 725 chain 23401 chr17 81195210 + 5056603 5056872 AluSp 311 - 34 303 113638 269 chain 121783 chr17 81195210 + 5088823 5090367 THE1A-int 1579 - 5 1551 30451 211 3 0 572 0 4 26 5 1 103 0 1 4 1 0 4 1 4 499 0 1 99 5 6 11 chain 24740 chr17 81195210 + 5090388 5090742 THE1A 353 - 0 353 106224 225 19 20 14 1 0 39 7 8 34 2 0 13 chain 3956 chr17 81195210 + 5094445 5094507 LTR6A 649 + 579 641 208030 6 0 1 4 0 1 8 1 0 26 1 0 16 chain 17463 chr17 81195210 + 5096895 5097116 L1PA6 6164 + 5931 6153 134349 58 13 14 150 chain 17022 chr17 81195210 + 5105633 5105902 MLT1A0-int 1658 + 142 419 135533 82 14 15 74 22 25 24 0 4 53 chain 20558 chr17 81195210 + 5112451 5112690 AluSp 311 - 34 273 125444 239 chain 55997 chr17 81195210 + 5120710 5121326 L1PA4 6152 - 2 618 55122 616 chain 12249 chr17 81195210 + 5149407 5149576 LTR39 781 + 0 172 151210 19 1 3 13 11 12 125 chain 25330 chr17 81195210 + 5152572 5152871 AluSg 306 + 3 299 103069 115 3 0 181 chain 12601 chr17 81195210 + 5155070 5155313 Tigger2 2703 + 2475 2703 149834 83 0 2 65 62 48 11 4 1 18 chain 5590 chr17 81195210 + 5167679 5167739 AluSq 315 + 239 299 189169 60 chain 24406 chr17 81195210 + 5169820 5170117 AluSc5 308 + 1 293 108046 285 5 0 7 chain 23506 chr17 81195210 + 5183630 5183909 AluSg7 307 - 24 307 113096 35 0 4 244 chain 26871 chr17 81195210 + 5183925 5184265 L1PA8 5853 - 0 335 96739 93 1 0 19 2 1 39 0 1 18 1 0 74 2 0 46 1 0 44 chain 23728 chr17 81195210 + 5212662 5212975 AluSp 311 + 0 308 111888 48 9 5 224 2 1 30 chain 2432 chr17 81195210 + 5226926 5226967 L1MA4 2864 - 1641 1680 233934 12 5 3 24 chain 9662 chr17 81195210 + 5228652 5228955 L1MA4 2864 + 2524 2793 162284 81 25 29 22 2 0 7 1 3 9 79 49 14 10 4 17 11 9 25 chain 12882 chr17 81195210 + 5254236 5254438 MER30 238 + 0 234 148695 15 10 31 62 6 0 6 5 20 46 0 1 18 0 1 34 chain 5886 chr17 81195210 + 5309990 5310067 MER30 238 - 0 80 186315 42 1 4 34 chain 9179 chr17 81195210 + 5335192 5335321 MER85 139 + 0 139 164660 96 4 14 29 chain 21698 chr17 81195210 + 5364653 5364941 AluY 311 + 2 297 121397 27 6 0 103 0 1 54 5 6 77 0 11 16 chain 8563 chr17 81195210 + 5370112 5370249 PABL_A-int 1935 + 145 283 167945 88 25 26 24 chain 36178 chr17 81195210 + 5370738 5371247 LTR19A 502 + 0 502 74666 176 6 10 33 17 2 59 5 7 24 0 3 5 3 1 140 0 1 41 chain 20692 chr17 81195210 + 5410878 5411164 AluSc8 310 + 11 298 124997 22 1 6 93 11 14 32 7 0 120 chain 4706 chr17 81195210 + 5417528 5417583 U7 62 - 0 55 198421 55 chain 12975 chr17 81195210 + 5430468 5430668 MER30 238 - 0 213 148330 39 3 0 27 2 0 34 2 0 6 12 32 75 chain 30245 chr17 81195210 + 5464746 5465062 AluYb8 318 - 2 318 84074 316 chain 193004 chr17 81195210 + 5468674 5471301 L1MA1 4479 - 331 4250 19773 6 1 0 35 2 0 29 1 0 123 1 0 8 1 0 74 5 1272 90 6 5 30 0 1 17 1 0 317 0 4 52 4 6 81 1 3 88 0 12 58 13 7 151 0 1 381 5 3 228 2 5 81 2 6 154 0 5 32 8 0 16 18 25 117 7 8 81 1 5 99 0 4 56 0 1 15 1 0 57 0 1 20 2 0 49 chain 4386 chr17 81195210 + 5476049 5476130 L1PA15 4387 + 3845 3927 202131 14 11 13 18 2 0 8 0 1 28 chain 540348 chr17 81195210 + 5476158 5482589 L1PA5 6144 + 0 6144 2762 386 0 1 589 5 14 839 316 0 680 1 0 115 1 2 64 0 1 99 2 0 710 1 17 167 1 0 128 1 0 532 0 4 1782 1 3 11 chain 5166 chr17 81195210 + 5540733 5540804 MER63C 923 + 36 106 193393 65 1 0 5 chain 42965 chr17 81195210 + 5577784 5578257 L1PA4 6152 + 5678 6151 65455 473 chain 8704 chr17 81195210 + 5589638 5589834 MLT1A 405 + 49 276 167176 69 33 31 34 33 66 27 chain 96888 chr17 81195210 + 5624170 5625264 SVA_D 2077 - 4 2073 37587 541 0 778 40 1 194 478 0 5 27 1 0 6 chain 26312 chr17 81195210 + 5629286 5630478 HSMAR1 1287 + 8 1206 38917 75 0 1 33 2 8 26 9 0 378 0 7 28 2 3 176 0 2 368 20 18 75 chain 165707 chr17 81195210 + 5630495 5633348 L1PB1 5432 + 3119 5418 22547 41 528 3 48 2 0 131 16 8 38 0 1 86 2 0 7 0 2 63 12 11 18 0 1 140 4 10 235 1 0 195 0 14 458 12 6 61 2 0 108 7 8 291 1 2 9 3 0 20 1 0 13 1 0 11 5 1 9 2 0 52 2 1 16 1 0 44 1 0 15 2 0 6 15 6 15 2 0 9 1 0 14 2 0 24 1 0 22 2 1 11 1 0 14 chain 34565 chr17 81195210 + 5630537 5631057 MLT2A2 560 + 0 560 76802 65 5 6 112 2 1 124 7 39 53 6 17 67 5 1 39 10 11 25 chain 1523 chr17 81195210 + 5633392 5633461 HSMAR1 1287 + 1217 1286 38917 69 chain 22372 chr17 81195210 + 5637393 5637697 AluSc8 310 + 3 309 118619 110 31 33 163 chain 25630 chr17 81195210 + 5638162 5638506 L1PA8 5853 + 5516 5853 101583 48 1 0 44 2 0 43 1 0 28 1 0 11 1 0 50 2 1 19 1 0 33 0 1 59 chain 65015 chr17 81195210 + 5647290 5648060 L1PA8A 6298 - 7 787 50569 55 1 9 562 0 2 152 chain 2814 chr17 81195210 + 5666207 5666265 MER81 114 + 0 59 228559 13 16 17 29 chain 47277 chr17 81195210 + 5672025 5672592 L1PA8 5853 + 5295 5853 60982 267 1 0 46 2 0 74 1 0 17 3 0 41 2 1 19 1 0 93 chain 122516 chr17 81195210 + 5674381 5676053 LTR12C 1709 + 0 1709 30216 271 6 10 10 9 5 42 0 43 27 1 2 54 20 4 182 0 119 68 1 0 275 1 0 5 3 1 106 10 4 9 1 2 21 0 2 137 102 0 228 1 0 82 chain 11064 chr17 81195210 + 5726577 5726744 LTR1 825 - 632 819 155948 8 0 1 68 5 12 20 5 17 61 chain 7319 chr17 81195210 + 5732623 5732724 LTR44 473 + 0 98 175308 57 4 1 40 chain 7847 chr17 81195210 + 5738217 5738308 LTR44 473 + 0 91 172029 91 chain 10195 chr17 81195210 + 5746824 5746985 LTR1 825 - 642 810 159648 91 12 24 44 5 0 9 chain 12450 chr17 81195210 + 5747147 5747303 MSTA 426 - 268 426 150461 37 0 1 88 0 1 31 chain 9840 chr17 81195210 + 5752001 5752138 L1PB3 3668 - 214 350 161393 59 8 7 70 chain 113830 chr17 81195210 + 5752879 5754119 L1PA3long 6157 - 0 1243 33140 154 0 1 272 0 2 356 0 1 156 1 0 301 chain 129330 chr17 81195210 + 5754119 5755535 L1PA3long 6157 + 3519 4932 28234 460 2 0 948 1 0 5 chain 4910 chr17 81195210 + 5760924 5760980 MER58B 340 + 272 328 196163 56 chain 5385 chr17 81195210 + 5810933 5811014 Tigger3b 1229 - 938 1035 191140 23 0 9 16 1 8 41 chain 49250 chr17 81195210 + 5837463 5838070 L1PA8 5853 - 0 600 59552 93 1 0 19 2 1 50 5 4 7 1 0 71 2 0 44 1 0 311 chain 5313 chr17 81195210 + 5843091 5843178 L1MB3 1562 + 1007 1093 191889 20 12 11 55 chain 14690 chr17 81195210 + 5863531 5863716 L1PA8 5853 - 379 558 142291 80 7 1 98 chain 25253 chr17 81195210 + 5863716 5864101 L1PA8 5853 + 5480 5853 103463 40 1 2 42 1 0 45 2 0 37 7 0 16 1 2 18 2 1 5 1 0 52 2 1 17 5 4 91 chain 40910 chr17 81195210 + 5871067 5871682 L1PB1 5432 - 12 596 68022 16 1 0 13 2 0 21 1 0 24 2 0 14 8 5 30 12 1 16 6 5 39 1 0 15 2 1 53 2 0 9 5 1 11 1 0 8 1 0 24 1 0 11 1 0 104 2 4 159 chain 29853 chr17 81195210 + 5872392 5872733 L1P3 4156 - 847 1188 85263 341 chain 45408 chr17 81195210 + 5872733 5873244 L1PA7 6471 + 5959 6470 62585 511 chain 3231 chr17 81195210 + 5883431 5883468 MLT1C 463 + 63 100 220399 37 chain 8788 chr17 81195210 + 5893072 5893172 L1PA5 6144 + 6030 6130 166718 100 chain 6298 chr17 81195210 + 5896176 5896294 L1PB1 5432 + 5309 5420 182810 13 12 10 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 3242 chr17 81195210 + 5903045 5903102 MLT1G1 539 - 477 535 220201 28 7 8 22 chain 17348 chr17 81195210 + 5907635 5907836 L1PA4 6152 + 5942 6143 134666 201 chain 11613 chr17 81195210 + 5909112 5909275 L1PA8 5853 + 5694 5853 153838 16 2 0 30 2 1 19 4 3 90 chain 11276 chr17 81195210 + 5909953 5911643 L1MC3 1789 - 569 1529 155142 89 1466 739 18 2 0 13 0 2 27 12 5 10 0 7 5 3 0 45 chain 29316 chr17 81195210 + 5933614 5933924 AluYa5 310 - 0 310 87460 310 chain 23822 chr17 81195210 + 5937644 5937963 THE1A 353 - 0 317 111352 151 2 0 30 0 1 61 6 5 69 chain 6242 chr17 81195210 + 5993448 5993517 L1PA3long 6157 + 6078 6147 183237 69 chain 2901 chr17 81195210 + 5999445 5999569 MIR 256 - 66 193 227030 18 3 0 5 38 42 16 22 24 22 chain 25463 chr17 81195210 + 6018007 6018353 L1PA8 5853 - 0 339 102392 93 1 0 19 3 2 51 2 1 8 2 1 70 2 0 44 1 0 50 chain 72557 chr17 81195210 + 6057084 6057995 L1PA8 5853 + 4921 5853 47239 84 1 4 431 8 8 116 1 0 45 2 0 73 1 0 54 2 24 93 chain 50319 chr17 81195210 + 6059096 6059703 L1PA7 6471 - 3 615 58772 9 2 0 282 0 1 37 3 0 6 0 2 213 0 7 55 chain 27905 chr17 81195210 + 6073546 6073915 THE1B 368 - 0 368 93347 187 17 16 165 chain 85263 chr17 81195210 + 6086251 6087542 L1P4 1494 + 138 1410 41436 6 1 0 63 1 0 6 2 3 174 36 39 124 1 8 28 0 4 191 1 4 25 0 1 49 2 1 54 0 2 71 5 4 12 9 0 2 0 9 145 21 0 3 22 0 104 0 3 6 3 10 61 1 0 40 2 0 20 chain 4785 chr17 81195210 + 6097606 6097709 HAL1-2a_MD 234 - 4 234 197523 10 6 0 23 6 85 17 0 60 28 6 0 7 chain 13331 chr17 81195210 + 6126409 6126561 L1PA5 6144 + 5988 6144 146971 141 0 4 11 chain 131534 chr17 81195210 + 6128951 6130411 SVA_D 2077 + 0 2076 27739 25 5 0 17 0 6 221 0 1 199 0 76 363 0 537 486 0 1 144 chain 14763 chr17 81195210 + 6138945 6139108 L1PA5 6144 + 5978 6141 142054 163 chain 23076 chr17 81195210 + 6159908 6160198 AluSg 306 + 0 297 115270 69 7 14 214 chain 22178 chr17 81195210 + 6162182 6162471 AluSx3 311 + 11 295 119455 95 17 11 15 0 1 162 chain 19126 chr17 81195210 + 6165186 6165423 L1PA5 6144 + 5916 6143 129752 74 7 0 140 3 0 13 chain 8292 chr17 81195210 + 6208269 6208546 MLT2D 439 - 180 430 169451 21 78 41 57 4 0 38 60 74 19 chain 24485 chr17 81195210 + 6246740 6247065 AluSp 311 + 0 309 107628 93 18 2 214 chain 3203 chr17 81195210 + 6248826 6248864 MamRep488 187 + 55 93 220895 38 chain 3511 chr17 81195210 + 6257564 6257601 MLT1C 463 + 52 89 215207 37 chain 18883 chr17 81195210 + 6258208 6258454 L1PA8 5853 + 5611 5853 130415 71 1 0 7 1 0 51 2 1 19 2 1 92 chain 43016 chr17 81195210 + 6276313 6276771 L1PA2 6032 + 5574 6032 65402 458 chain 43515 chr17 81195210 + 6298708 6299203 L1PA4 6152 + 5655 6152 64788 131 0 2 364 chain 37588 chr17 81195210 + 6308040 6308499 L1PA7 6471 - 1 458 72700 8 2 0 146 2 1 11 0 1 25 4 0 150 0 4 111 chain 37983 chr17 81195210 + 6322293 6323154 L1PA8 5853 + 5320 5853 72157 135 0 5 61 0 3 40 2 1 43 3 1 29 324 0 37 5 4 9 1 0 57 1 0 15 2 1 33 5 0 59 chain 2731 chr17 81195210 + 6341486 6341529 MER6B 211 - 0 44 229726 22 4 5 17 chain 3477 chr17 81195210 + 6346685 6346728 MSTD 398 - 355 398 215696 43 chain 29059 chr17 81195210 + 6422375 6422690 AluYb8 318 + 0 315 88721 315 chain 8049 chr17 81195210 + 6504281 6504371 5S 121 - 31 121 170763 90 chain 4978 chr17 81195210 + 6518031 6518121 MER44D 709 + 21 110 195390 27 16 15 47 chain 24453 chr17 81195210 + 6583006 6583284 AluY 311 + 16 293 107787 107 1 0 170 chain 48721 chr17 81195210 + 6618764 6619379 L1PA8 5853 - 0 625 59936 92 7 6 11 1 0 47 1 0 9 1 0 9 2 1 68 2 0 46 1 0 155 0 18 163 chain 34426 chr17 81195210 + 6621057 6621501 LTR2 463 + 0 463 77023 61 0 3 112 12 27 159 12 13 88 chain 12419 chr17 81195210 + 6626399 6626544 MSTA 426 - 0 145 150564 145 chain 100971 chr17 81195210 + 6627996 6629185 L1PA6 6164 + 4972 6162 36515 76 1 0 235 1 2 27 0 4 78 0 1 65 5 4 362 1 0 330 2 0 6 chain 13257 chr17 81195210 + 6633306 6633483 L1M1 2793 - 1595 1771 147257 18 1 0 158 chain 3725 chr17 81195210 + 6633494 6633534 MER4E1 777 + 663 703 211558 40 chain 95248 chr17 81195210 + 6633875 6635275 L1M1 2793 + 1197 2625 38019 48 24 23 86 0 12 88 2 1 19 2 0 190 0 1 118 10 7 207 1 0 11 0 4 39 7 8 46 1 0 97 5 9 20 2 3 43 9 21 136 1 0 144 14 0 7 8 25 15 chain 243263 chr17 81195210 + 6636436 6640273 HERVH-int 3825 - 0 3758 16603 458 3 9 7 6 0 58 1 0 33 28 30 135 0 3 72 7 6 212 11 0 87 0 1 296 16 17 78 6 4 37 8 11 176 1 6 91 0 2 11 0 35 170 0 1 111 0 13 78 5 0 106 329 0 6 10 0 36 12 3 77 0 1 10 16 15 10 0 1 88 15 0 30 49 52 96 24 25 18 14 14 194 5 273 6 0 1 17 87 52 30 21 20 63 1 0 257 0 1 8 chain 25729 chr17 81195210 + 6640348 6640771 LTR7B 505 - 10 505 101168 40 15 14 27 2 1 5 0 1 44 1 0 63 0 88 15 46 22 60 0 10 105 chain 17389 chr17 81195210 + 6640771 6640981 L1PB 1623 + 1235 1445 134540 210 chain 34552 chr17 81195210 + 6641760 6642208 LTR2 463 - 0 463 76829 88 14 15 157 1 15 188 chain 19398 chr17 81195210 + 6644391 6644637 L1PA8 5853 + 5610 5853 128956 80 1 0 50 2 1 19 1 0 93 chain 95021 chr17 81195210 + 6645262 6646601 L1MA3 4352 + 2424 3747 38088 232 1 2 60 11 12 10 10 6 27 9 10 513 4 0 141 1 0 171 17 19 22 17 5 93 chain 34227 chr17 81195210 + 6647300 6648155 L1PREC2 3366 + 2456 3215 77314 124 0 4 62 0 1 103 1 0 4 1 0 44 13 12 39 1 0 5 60 52 15 3 0 4 0 1 25 37 20 35 14 12 33 213 145 19 chain 4400 chr17 81195210 + 6654459 6654514 MER63B 433 - 55 110 201936 55 chain 34866 chr17 81195210 + 6680424 6680862 L1PA8 5853 - 0 431 76387 92 2 1 16 1 0 51 1 0 14 3 2 69 2 0 46 1 0 140 chain 54485 chr17 81195210 + 6691077 6691834 MER4E 760 - 0 759 56037 153 0 1 66 6 8 84 1 0 85 0 2 183 24 27 27 19 23 77 9 0 23 chain 10017 chr17 81195210 + 6694335 6694445 L1PA5 6144 - 3 113 160500 110 chain 543131 chr17 81195210 + 6705811 6711933 L1PA4 6152 - 9 6151 2323 307 0 24 2124 2 0 171 2 1 339 2 0 2616 0 1 559 chain 10889 chr17 81195210 + 6712325 6712533 L1MC2 1988 - 0 193 156625 42 42 37 37 6 0 25 4 0 52 chain 25125 chr17 81195210 + 6715279 6715605 THE1D 372 + 0 332 104154 166 0 4 8 11 13 141 chain 63708 chr17 81195210 + 6719553 6720285 L1PA6 6164 - 2 732 51140 8 2 0 722 chain 37862 chr17 81195210 + 6724896 6725449 THE1D-int 1627 + 23 723 72325 15 1 0 32 1 0 132 1 2 138 4 106 28 21 67 5 1 0 141 0 2 5 9 8 19 chain 26754 chr17 81195210 + 6727134 6727440 AluYk4 311 - 5 311 97150 306 chain 6851 chr17 81195210 + 6732967 6733051 MER2 342 - 126 210 178569 84 chain 5005 chr17 81195210 + 6736135 6736269 MER2B 336 - 154 279 195083 19 60 50 42 0 1 13 chain 307880 chr17 81195210 + 6748921 6752978 L1PA7 6471 - 2 6469 13092 12 1 2 22 0 9 140 2 1 9 4 0 142 0 1 286 2 3 140 1 3 75 0 3 502 261 2664 425 0 1 101 0 1 78 1 2 1354 1 0 79 13 5 208 0 1 198 chain 28217 chr17 81195210 + 6770021 6770324 AluYb8 318 + 19 318 92246 107 4 0 192 chain 11553 chr17 81195210 + 6778214 6778442 L1MA3 4352 - 1 215 154088 21 6 2 14 1 0 19 0 1 6 1 0 5 2 1 15 29 22 65 1 0 43 chain 45343 chr17 81195210 + 6778464 6778980 MER9a1 513 - 0 513 62664 129 1 0 286 1 0 85 1 0 13 chain 337947 chr17 81195210 + 6778980 6783027 HERVK9-int 4720 - 0 4684 11954 143 0 1 529 8 7 107 0 2 313 4 18 99 0 629 65 0 2 209 1 0 416 9 12 537 0 1 118 1 11 12 17 1 1328 1 0 28 1 0 8 1 0 66 1 0 4 8 5 13 chain 45211 chr17 81195210 + 6784339 6784849 MER9a1 513 - 0 513 62818 225 0 3 285 chain 105542 chr17 81195210 + 6784921 6786472 L1MA3 4352 - 266 1769 35362 86 10 12 71 10 12 234 0 12 113 12 10 41 0 3 80 14 16 11 1 0 137 10 1 144 14 0 22 0 1 326 58 13 106 0 1 51 chain 272175 chr17 81195210 + 6786702 6789812 L1PA4 6152 - 9 3108 15068 96 0 3 47 0 1 694 0 4 950 0 4 250 21 0 91 1 3 311 3 0 486 1 0 159 chain 51214 chr17 81195210 + 6820045 6820931 L1PB1 5432 + 4562 5420 58179 59 0 1 47 3 0 7 0 5 10 6 9 8 0 1 22 10 13 60 1 0 108 4 5 186 23 11 24 21 21 9 2 0 49 9 8 11 1 0 41 10 9 10 3 0 6 63 48 20 1 0 21 1 0 13 1 0 16 chain 10678 chr17 81195210 + 6835482 6835612 L1PA7 6471 - 6 135 157492 55 1 0 74 chain 4806 chr17 81195210 + 6838201 6838344 L1PA15 4387 - 218 359 197297 16 72 70 55 chain 6106 chr17 81195210 + 6839681 6839786 MER51A 677 - 16 135 184375 41 3 6 11 7 18 43 chain 5770 chr17 81195210 + 6845258 6845334 MER4D1 891 - 289 364 187445 35 2 1 39 chain 127410 chr17 81195210 + 6847144 6848543 L1PA3long 6157 + 4756 6152 28713 446 3 0 950 chain 57691 chr17 81195210 + 6854127 6854793 L1PA7 6471 + 5800 6466 54137 70 0 1 98 1 0 497 chain 6151 chr17 81195210 + 6855892 6855960 MER41B 635 + 481 549 183976 68 chain 3126 chr17 81195210 + 6856779 6856817 MADE1 96 + 58 96 222418 38 chain 41754 chr17 81195210 + 6863502 6863953 L1PA3long 6157 + 5332 5783 66954 451 chain 34070 chr17 81195210 + 6863953 6864324 L1PA3long 6157 + 5785 6156 77513 371 chain 6895 chr17 81195210 + 6873833 6874055 L1MDa 1598 + 495 722 178223 28 1 0 5 37 39 38 5 0 6 1 5 15 49 54 37 chain 3700 chr17 81195210 + 6875529 6875644 Tigger3 1187 - 448 555 211940 32 6 5 17 44 37 16 chain 4996 chr17 81195210 + 6885624 6885837 MER2 342 - 130 342 195178 53 136 135 24 chain 3456 chr17 81195210 + 6891504 6891548 MSTB2 466 + 19 63 216066 44 chain 30233 chr17 81195210 + 6892434 6892841 Tigger1 2417 + 652 1074 84106 76 0 1 71 0 11 13 0 1 158 12 14 77 chain 5505 chr17 81195210 + 6911226 6911299 MLT1A0 366 - 33 107 190000 59 1 2 13 chain 11811 chr17 81195210 + 6934297 6934552 MSTC-int 1625 - 2 254 152981 4 1 0 47 1 0 4 5 6 11 15 28 19 26 14 33 4 3 50 7 5 28 chain 24918 chr17 81195210 + 6936157 6936459 AluSc5 308 - 5 307 105233 46 1 0 148 1 2 106 chain 80726 chr17 81195210 + 6950075 6951037 LTR13A 966 - 0 966 43296 92 1 0 4 6 7 165 1 0 94 0 1 523 0 4 76 chain 16399 chr17 81195210 + 6972268 6972513 MSTA 426 - 21 270 137211 84 0 3 69 7 8 5 2 0 18 4 6 56 chain 36394 chr17 81195210 + 6985426 6985884 L1PA8 5853 - 10 461 74372 83 1 0 16 9 8 48 1 0 9 1 0 71 2 0 46 1 0 170 chain 14017 chr17 81195210 + 6986712 6986889 MSTA 426 - 247 426 144513 58 0 1 20 1 2 98 chain 25688 chr17 81195210 + 6992464 6992760 AluYf4 310 + 1 300 101341 89 0 3 207 chain 14486 chr17 81195210 + 6992780 6992952 LTR5B 1012 + 837 1012 142925 166 0 3 6 chain 86135 chr17 81195210 + 6994642 6995606 LTR13A 966 - 0 966 41106 362 0 1 67 0 1 535 chain 92576 chr17 81195210 + 7003251 7004411 LTR12C 1709 - 0 1709 38795 84 1 0 132 0 103 138 0 57 77 0 47 57 0 278 209 2 0 58 2 0 5 2 0 83 0 43 45 16 16 63 0 28 186 chain 13902 chr17 81195210 + 7007101 7007254 L1PA4 6152 - 0 153 144908 153 chain 13897 chr17 81195210 + 7024653 7024873 LOR1b 457 - 46 303 144928 53 1 0 25 5 7 38 0 1 54 20 55 24 chain 33509 chr17 81195210 + 7026928 7027454 MLT2A2 560 + 0 560 78397 125 4 5 33 23 22 52 13 29 42 0 6 70 18 29 116 1 2 29 chain 20792 chr17 81195210 + 7028653 7028903 AluY 311 + 50 295 124632 75 7 2 168 chain 90726 chr17 81195210 + 7029589 7030591 LTR13 1007 + 8 1007 39382 526 3 0 473 chain 56434 chr17 81195210 + 7030764 7031381 L1PA4 6152 + 5534 6151 54889 617 chain 30728 chr17 81195210 + 7045529 7046020 LTR7B 505 - 0 505 82989 51 14 13 77 1 0 62 5 9 13 29 0 22 2 0 5 0 26 29 16 23 60 0 10 105 chain 27011 chr17 81195210 + 7048913 7049324 MER4A 717 + 15 703 96250 37 0 18 10 16 4 45 1 0 27 0 198 16 0 40 83 27 61 149 chain 4285 chr17 81195210 + 7056283 7056353 L1MC2 1988 + 1603 1669 203406 11 8 3 10 0 1 41 chain 32007 chr17 81195210 + 7057444 7057841 THE1B-int 1605 - 1208 1605 80856 397 chain 22538 chr17 81195210 + 7057841 7058202 THE1B 368 - 0 368 117857 46 0 4 6 1 2 5 2 0 65 1 0 10 44 50 11 1 0 169 chain 5872 chr17 81195210 + 7061319 7061440 L1PB3 3668 - 74 186 186448 12 1 0 13 7 3 37 3 1 22 7 5 19 chain 24741 chr17 81195210 + 7061910 7062198 AluSp 311 - 21 309 106216 288 chain 72119 chr17 81195210 + 7072198 7073093 MER11D 897 + 0 897 47425 38 0 1 536 0 23 48 1 0 214 30 9 28 chain 5514 chr17 81195210 + 7161401 7161470 MER41A 554 + 398 467 189909 69 chain 22630 chr17 81195210 + 7176630 7176900 AluY 311 + 36 304 117420 96 0 1 164 3 0 7 chain 22291 chr17 81195210 + 7207287 7207555 AluSp 311 - 34 310 118944 66 0 8 202 chain 84716 chr17 81195210 + 7235888 7236851 LTR13A 966 - 0 966 41632 39 1 0 86 0 3 768 0 1 69 chain 21633 chr17 81195210 + 7278967 7279226 AluSq 315 + 33 293 121644 103 0 1 156 chain 2996 chr17 81195210 + 7279266 7279317 L1ME1 1623 + 1233 1283 225102 21 5 4 25 chain 23164 chr17 81195210 + 7353083 7353362 AluY 311 + 2 288 114839 124 0 1 140 0 6 15 chain 23721 chr17 81195210 + 7398322 7398609 AluSc 308 + 0 293 111925 72 0 6 215 chain 117414 chr17 81195210 + 7427855 7432552 MER61-int 3695 - 421 3078 31989 111 1 0 11 12 9 43 1962 946 16 0 1 219 2 0 24 11 14 212 0 1 130 306 0 118 3 1 78 9 8 43 764 41 121 0 5 28 2 1 144 8 10 21 0 1 62 2 0 73 0 3 20 0 1 141 chain 26075 chr17 81195210 + 7431205 7431919 L1PA8 5853 - 0 351 99727 92 359 1 19 2 1 48 1 0 12 3 2 68 2 0 46 1 0 43 0 1 18 chain 2962 chr17 81195210 + 7433993 7434026 PABL_B 668 - 574 607 225857 33 chain 5276 chr17 81195210 + 7435181 7435346 Tigger2a 444 - 67 236 192253 36 89 93 40 chain 54973 chr17 81195210 + 7435644 7436608 PABL_A 660 + 0 660 55721 84 0 9 330 313 0 237 chain 7687 chr17 81195210 + 7440424 7440512 HY3 101 - 12 100 172997 88 chain 25171 chr17 81195210 + 7450480 7450776 AluSg7 307 - 0 297 103903 175 0 1 121 chain 20313 chr17 81195210 + 7511123 7511387 AluSp 311 - 22 290 126195 97 0 3 44 6 7 117 chain 24435 chr17 81195210 + 7519643 7519944 AluY 311 + 0 284 107882 126 17 0 158 chain 10872 chr17 81195210 + 7524294 7524437 AluJb 308 + 163 307 156689 87 2 3 54 chain 112855 chr17 81195210 + 7544032 7545595 LTR12C 1709 + 0 1709 33414 211 40 56 11 0 1 59 9 53 213 5 6 40 0 119 68 1 0 237 0 2 36 1 0 4 4 2 90 26 2 14 11 4 71 5 6 322 2 0 19 1 0 63 chain 5487 chr17 81195210 + 7550608 7550672 MER45B 1037 + 516 580 190153 64 chain 24334 chr17 81195210 + 7561688 7561992 AluSq2 311 + 1 300 108457 119 7 0 12 0 2 166 chain 4381 chr17 81195210 + 7607961 7608015 MIRc 230 + 69 123 202177 54 chain 24927 chr17 81195210 + 7644974 7645280 AluSp 311 - 4 311 105178 131 5 6 170 chain 24200 chr17 81195210 + 7699363 7699666 AluSp 311 - 7 311 109211 35 5 7 142 1 0 120 chain 18673 chr17 81195210 + 7705722 7705965 MER2 342 - 6 250 131021 85 0 3 24 2 1 109 1 0 22 chain 8613 chr17 81195210 + 7709424 7709548 Tigger5 388 + 138 260 167666 97 1 0 4 2 1 20 chain 8345 chr17 81195210 + 7779170 7779411 L1MB7 1623 - 35 235 169147 28 46 28 14 3 0 19 1 0 7 5 1 11 2 1 27 14 8 8 1 0 3 6 0 10 1 0 35 chain 24304 chr17 81195210 + 7845644 7845938 AluSc8 310 + 6 308 108640 24 1 6 96 0 3 173 chain 6034 chr17 81195210 + 7873450 7873852 L1MB7 1623 - 138 476 184937 6 1 0 27 44 23 7 1 0 34 250 209 32 chain 35487 chr17 81195210 + 7878137 7878588 LOR1a 498 - 45 498 75575 388 0 1 18 1 2 44 chain 26007 chr17 81195210 + 7913844 7914144 AluY 311 + 2 300 99987 131 1 0 41 2 1 125 chain 27249 chr17 81195210 + 7933058 7933358 AluY 311 + 9 309 95433 300 chain 22619 chr17 81195210 + 7938961 7939227 AluY 311 + 38 306 117491 33 0 1 54 0 1 179 chain 27964 chr17 81195210 + 7965224 7965608 LTR7 482 + 0 477 93125 101 13 63 47 11 53 41 0 1 171 chain 39780 chr17 81195210 + 7971867 7972327 LTR2 463 - 0 463 69655 94 0 1 294 0 2 72 chain 7441 chr17 81195210 + 7981223 7981392 MER2 342 + 6 185 174505 21 58 64 26 1 0 5 0 3 53 0 2 5 chain 44275 chr17 81195210 + 7985609 7986166 LTR14 556 + 0 556 63852 134 11 10 48 1 2 271 1 0 91 chain 24718 chr17 81195210 + 7996895 7997184 AluSp 311 + 0 285 106337 141 5 1 143 chain 6881 chr17 81195210 + 8022472 8022545 tRNA-Lys-AAA 73 + 0 73 178344 73 chain 3897 chr17 81195210 + 8023069 8023112 tRNA-Gln-CAG 43 + 0 43 208903 43 chain 7594 chr17 81195210 + 8023631 8023713 tRNA-Leu-CTY 82 - 0 82 173591 82 chain 3547 chr17 81195210 + 8024242 8024279 tRNA-Arg-AGA 37 + 0 37 214599 37 chain 5143 chr17 81195210 + 8029063 8029122 tRNA-Gly-GGY 63 + 0 58 193631 54 1 0 4 chain 25828 chr17 81195210 + 8040399 8040699 AluSp 311 - 11 311 100754 300 chain 7603 chr17 81195210 + 8042200 8042280 tRNA-Ser-TCG 80 - 0 80 173526 80 chain 4189 chr17 81195210 + 8042798 8042843 tRNA-Thr-ACY 58 - 13 58 204721 45 chain 10063 chr17 81195210 + 8057189 8057308 AluSp 311 + 0 125 160256 16 0 6 103 chain 10540 chr17 81195210 + 8076770 8076903 U8 134 - 0 134 158087 99 2 3 32 chain 25827 chr17 81195210 + 8086878 8087168 AluSp 311 - 20 310 100758 290 chain 6930 chr17 81195210 + 8089675 8089747 tRNA-Trp-TGG 72 + 0 72 177964 72 chain 7894 chr17 81195210 + 8090183 8090265 tRNA-Ser-AGY 82 + 0 82 171694 82 chain 4311 chr17 81195210 + 8090477 8090522 tRNA-Thr-ACY 58 + 0 45 203085 45 chain 3729 chr17 81195210 + 8090910 8090949 tRNA-Ile-ATT 40 + 0 39 211495 39 chain 23365 chr17 81195210 + 8104157 8104438 AluSg 306 + 0 279 113836 52 3 1 226 chain 20775 chr17 81195210 + 8105668 8105910 AluSc 308 - 46 288 124699 242 chain 6808 chr17 81195210 + 8124186 8124258 tRNA-Trp-TGG 72 - 0 72 178897 72 chain 3507 chr17 81195210 + 8124865 8124903 tRNA-Gly-GGA 38 + 0 38 215259 38 chain 3638 chr17 81195210 + 8125588 8125627 tRNA-Asp-GAY 44 - 5 44 213015 39 chain 6957 chr17 81195210 + 8126150 8126222 tRNA-Pro-CCG 72 - 0 72 177769 72 chain 4311 chr17 81195210 + 8129581 8129626 tRNA-Thr-ACY 58 - 13 58 203086 45 chain 7894 chr17 81195210 + 8129927 8130009 tRNA-Ser-TCY 82 - 0 82 171702 82 chain 3729 chr17 81195210 + 8130343 8130382 tRNA-Ile-ATT 40 - 1 40 211500 39 chain 3068 chr17 81195210 + 8154945 8154983 LTR26B 539 - 300 346 223599 29 0 8 9 chain 14278 chr17 81195210 + 8208476 8208646 MER4E1 777 - 8 178 143626 170 chain 11241 chr17 81195210 + 8209690 8209826 MER4A1 472 + 0 138 155259 47 1 2 32 0 1 56 chain 23047 chr17 81195210 + 8209832 8210121 AluSc 308 + 4 294 115410 253 2 1 14 3 5 17 chain 43123 chr17 81195210 + 8211048 8211925 MER4-int 2692 + 116 693 65267 114 0 1 73 10 11 245 1 0 5 0 1 59 309 7 61 chain 25294 chr17 81195210 + 8242555 8242846 AluSp 311 - 11 302 103254 291 chain 78755 chr17 81195210 + 8250085 8250998 LTR12C 1709 - 464 1709 44167 17 0 4 65 0 47 98 0 278 223 5 4 470 0 4 35 chain 31908 chr17 81195210 + 8256089 8256550 LTR7B 505 - 2 505 80997 61 2 1 35 0 2 17 0 1 24 1 0 9 8 5 29 0 1 34 0 2 30 3 27 28 6 13 66 1 11 107 chain 15992 chr17 81195210 + 8270995 8271165 SVA_D 2077 - 97 267 138375 170 chain 8209 chr17 81195210 + 8271165 8271262 SVA_B 1603 + 1500 1603 169438 83 0 6 14 chain 130427 chr17 81195210 + 8276493 8277959 SVA_B 1603 + 23 1603 27981 19 6 5 492 0 2 282 0 40 58 4 0 26 0 77 579 chain 7115 chr17 81195210 + 8314041 8314134 MER5A1 166 - 32 125 176650 93 chain 7752 chr17 81195210 + 8319365 8319491 L1MB3 1562 - 7 129 172590 32 1 0 26 6 5 54 2 0 5 chain 14021 chr17 81195210 + 8335106 8335621 HSMAR2 1300 - 13 225 144502 87 310 11 14 4 0 100 chain 2671 chr17 81195210 + 8337142 8337181 HSMAR2 1300 - 1229 1269 230765 9 1 2 29 chain 2847 chr17 81195210 + 8351321 8351351 MER51A 677 - 283 313 227916 30 chain 3930 chr17 81195210 + 8372978 8373023 HY4 93 - 3 48 208412 45 chain 23943 chr17 81195210 + 8446798 8447089 AluSg7 307 - 11 307 110662 16 1 5 143 0 1 131 chain 126780 chr17 81195210 + 8453040 8454470 SVA_F 1814 + 6 1803 28864 758 0 80 17 0 290 646 3 0 6 chain 9015 chr17 81195210 + 8487786 8488059 LTR56 451 - 163 438 165518 72 0 2 5 144 144 52 chain 23585 chr17 81195210 + 8488174 8488448 AluSp 311 - 25 299 112660 274 chain 30130 chr17 81195210 + 8550355 8550771 MLT2A1 477 + 0 468 84387 48 0 2 89 0 1 21 9 13 208 13 59 17 1 0 10 chain 5190 chr17 81195210 + 8570446 8570507 MER53 195 + 0 61 193143 61 chain 49255 chr17 81195210 + 8585808 8586402 L1PA7 6471 - 47 645 59547 84 8 11 21 0 1 481 chain 23154 chr17 81195210 + 8588961 8589246 AluY 311 + 0 290 114873 123 1 0 4 1 2 26 0 5 130 chain 12004 chr17 81195210 + 8605815 8605990 L1PA7 6471 - 6 166 152181 47 23 0 12 0 8 93 chain 16208 chr17 81195210 + 8620885 8621304 LTR12C 1709 - 494 934 137727 35 109 6 14 82 0 42 0 47 75 0 159 62 chain 5300 chr17 81195210 + 8620922 8620986 LTR12C 1709 - 991 1055 192021 64 chain 23369 chr17 81195210 + 8643540 8643829 AluSq4 311 + 14 304 113820 94 1 2 21 0 1 69 1 0 103 chain 41647 chr17 81195210 + 8671789 8672297 LTR10D 510 + 0 510 67095 76 9 8 187 1 3 70 0 1 165 chain 4053 chr17 81195210 + 8697448 8697601 MIR 256 + 58 221 206588 46 90 100 17 chain 26374 chr17 81195210 + 8713350 8713706 THE1B 368 - 0 368 98520 126 1 0 12 1 0 56 10 9 109 1 16 40 chain 120853 chr17 81195210 + 8713706 8715254 THE1B-int 1605 - 0 1605 30742 72 1 4 47 12 5 353 0 2 4 2 1 29 0 1 36 2 10 585 1 26 113 0 18 12 0 3 13 0 3 142 0 2 124 chain 26327 chr17 81195210 + 8715269 8715603 THE1B 368 - 20 368 98712 174 10 9 106 0 15 44 chain 23574 chr17 81195210 + 8727313 8727603 AluSp 311 + 10 299 112715 9 1 0 280 chain 39113 chr17 81195210 + 8729616 8730110 L1PA8 5853 + 5366 5853 70585 155 1 0 31 0 1 9 1 0 48 2 0 72 1 0 6 1 0 52 2 1 22 1 0 90 chain 12879 chr17 81195210 + 8734507 8734669 AluJr 308 + 149 308 148709 6 3 0 153 chain 24655 chr17 81195210 + 8737209 8737495 AluYc3 301 + 6 293 106697 114 0 1 172 chain 49644 chr17 81195210 + 8749279 8750006 L1PA16 3655 - 890 1626 59279 77 14 13 14 5 17 241 7 0 6 9 17 147 1 0 105 8 7 42 2 1 49 chain 8969 chr17 81195210 + 8758923 8759021 L1PA7 6471 - 12 110 165779 98 chain 48718 chr17 81195210 + 8777940 8778733 LTR6B 557 - 0 557 59940 49 235 0 153 0 1 308 2 0 46 chain 21399 chr17 81195210 + 8809319 8809592 L1PA8 5853 - 0 269 122515 92 2 1 19 2 1 61 1 0 12 0 1 58 2 0 24 chain 12992 chr17 81195210 + 8852942 8853217 L1PB1 5432 + 5167 5430 148272 53 18 16 45 1 0 15 5 0 6 15 6 18 19 29 15 1 0 21 1 0 13 1 0 18 2 0 8 chain 12695 chr17 81195210 + 8874351 8874517 MSTA 426 + 27 196 149463 105 1 0 19 0 4 41 chain 4161 chr17 81195210 + 8882248 8882317 L1MB8 1703 + 1482 1551 205080 21 5 6 4 1 0 38 chain 4987 chr17 81195210 + 8891419 8891623 L1ME1 1623 - 334 578 195278 49 129 169 26 chain 27006 chr17 81195210 + 8891892 8892264 THE1B 368 + 0 368 96264 82 12 13 74 1 0 22 2 4 5 4 0 32 1 0 10 1 0 126 chain 24482 chr17 81195210 + 8902129 8902412 AluSp 311 + 11 294 107643 283 chain 24600 chr17 81195210 + 8945828 8946118 AluSg 306 + 5 295 106994 290 chain 46900 chr17 81195210 + 8951311 8951971 Tigger1 2417 - 823 1467 61309 99 0 1 36 31 5 158 11 0 204 5 9 20 0 8 30 0 8 66 chain 24249 chr17 81195210 + 9005500 9005879 THE1C 375 - 0 375 108949 25 1 0 119 4 7 25 13 10 6 0 4 88 24 17 74 chain 26579 chr17 81195210 + 9006632 9006997 THE1C 375 + 0 375 97730 182 35 46 122 1 0 25 chain 3977 chr17 81195210 + 9014579 9014662 MLT1C 463 - 353 442 207729 43 23 29 17 chain 25495 chr17 81195210 + 9015875 9016159 AluYf4 310 + 15 299 102247 284 chain 24042 chr17 81195210 + 9029555 9029837 AluSp 311 + 12 291 110104 116 2 0 123 1 0 40 chain 20190 chr17 81195210 + 9050577 9050839 AluY 311 + 37 291 126557 93 9 0 76 8 9 76 chain 4388 chr17 81195210 + 9051885 9051937 MER53 195 - 141 193 202100 52 chain 37964 chr17 81195210 + 9055059 9055578 LTR12F 595 + 1 595 72186 102 6 1 33 5 87 163 0 1 4 13 10 193 chain 4022 chr17 81195210 + 9067435 9067480 MER45A 178 - 0 45 207057 45 chain 3281 chr17 81195210 + 9100247 9100320 MER63A 208 + 51 125 219342 18 24 25 31 chain 23216 chr17 81195210 + 9166517 9166797 AluSp 311 + 6 283 114615 107 1 0 19 3 0 61 0 1 89 chain 23807 chr17 81195210 + 9206339 9206609 AluSc 308 + 11 282 111432 93 0 1 177 chain 24595 chr17 81195210 + 9215512 9215810 AluSp 311 - 18 304 107019 7 12 0 279 chain 15279 chr17 81195210 + 9221454 9221633 L1PA6 6164 - 13 192 140544 179 chain 23274 chr17 81195210 + 9222480 9222762 AluY 311 + 26 309 114322 106 0 1 176 chain 7570 chr17 81195210 + 9236593 9236684 L1PA16 3655 - 80 171 173731 91 chain 4406 chr17 81195210 + 9237969 9238063 MSTD 398 - 12 106 201858 5 1 0 27 19 21 6 1 0 35 chain 3634 chr17 81195210 + 9238342 9238381 LTR10A 586 + 198 237 213094 39 chain 5425 chr17 81195210 + 9249071 9249147 Tigger4a 237 - 3 90 190760 55 1 12 20 chain 52842 chr17 81195210 + 9279429 9280195 LTR12 884 + 0 884 57109 143 5 4 22 41 17 61 0 25 23 8 24 21 1 2 36 2 0 202 0 103 201 chain 12720 chr17 81195210 + 9285754 9285900 L1PA6 6164 - 4 149 149376 6 2 0 20 0 1 118 chain 25334 chr17 81195210 + 9291841 9292146 AluSp 311 + 3 308 103049 305 chain 34253 chr17 81195210 + 9307273 9307780 Tigger2 2703 - 60 585 77274 26 5 8 48 0 2 7 2 0 59 0 3 33 11 17 53 0 3 40 4 15 16 9 0 61 0 2 89 1 0 43 chain 56723 chr17 81195210 + 9310768 9311531 MER4E1 777 - 8 777 54704 4 1 0 63 4 5 158 17 1 104 0 1 85 0 19 33 0 3 5 3 0 22 0 1 18 1 0 122 1 0 15 3 5 87 0 1 17 chain 23135 chr17 81195210 + 9318809 9319087 AluY 311 + 3 284 114967 78 0 2 49 0 1 151 chain 3624 chr17 81195210 + 9357498 9357538 MER44B 551 - 40 80 213287 40 chain 62886 chr17 81195210 + 9414664 9415782 L1MA5A 2387 + 19 1110 51495 13 0 5 10 3 1 9 2 1 15 75 55 11 25 20 21 6 4 15 5 7 87 1 8 32 0 3 170 6 4 73 22 22 46 18 16 234 6 5 23 5 6 78 24 14 83 chain 27031 chr17 81195210 + 9430236 9430520 AluYb8 318 + 22 306 96183 284 chain 5959 chr17 81195210 + 9434798 9434902 MER44A 345 + 28 148 185605 22 20 36 62 chain 73551 chr17 81195210 + 9467145 9468242 L1PA13 3608 + 2457 3434 46763 144 6 7 266 142 24 152 1 0 21 0 3 94 0 1 104 2 0 63 1 0 55 1 0 5 2 0 38 chain 13299 chr17 81195210 + 9482177 9482456 MER49 923 - 658 923 147082 48 0 7 43 0 3 54 101 77 33 chain 39944 chr17 81195210 + 9504290 9504738 L1PA4 6152 + 5702 6151 69400 336 0 1 112 chain 67326 chr17 81195210 + 9505445 9506254 L1PA7 6471 - 2 821 49518 19 8 7 122 0 1 6 0 1 227 2 0 84 0 11 341 chain 566769 chr17 81195210 + 9519302 9525328 L1HS 6032 + 0 6026 103 6026 chain 25521 chr17 81195210 + 9551039 9551343 AluY 311 + 0 288 102132 126 16 0 162 chain 26202 chr17 81195210 + 9587803 9588103 AluSp 311 + 5 305 99190 300 chain 23203 chr17 81195210 + 9595091 9595373 AluY 311 + 8 297 114670 47 0 7 71 1 0 57 0 1 106 chain 16739 chr17 81195210 + 9617311 9617548 Charlie3 2679 - 2422 2658 136286 189 4 11 7 7 0 17 1 0 12 chain 16407 chr17 81195210 + 9635136 9635386 L1PA6 6164 + 5903 6161 137187 89 30 30 37 1 9 93 chain 41355 chr17 81195210 + 9635996 9636471 L1PA3long 6157 + 5676 6157 67466 326 7 0 10 0 7 118 0 6 14 chain 8844 chr17 81195210 + 9656521 9656622 L1PA5 6144 + 6040 6141 166406 101 chain 18232 chr17 81195210 + 9658329 9658665 MLT1B 390 - 0 331 132254 46 1 0 19 4 3 50 5 8 5 3 0 37 53 49 100 0 1 13 chain 17381 chr17 81195210 + 9700259 9700493 L1PA8 5853 - 0 226 134560 55 4 0 38 1 0 19 2 1 50 2 1 10 1 0 52 chain 30547 chr17 81195210 + 9755384 9755785 L1PA8 5853 - 0 394 83344 93 1 0 19 2 1 52 1 0 9 2 1 64 6 4 46 1 0 105 chain 23077 chr17 81195210 + 9760243 9760535 AluSc5 308 - 17 308 115264 12 9 7 229 0 1 42 chain 18925 chr17 81195210 + 9761279 9761524 MER2 342 + 93 336 130306 23 2 0 220 chain 24602 chr17 81195210 + 9780925 9781212 AluYc 301 + 1 290 106986 119 0 2 168 chain 28361 chr17 81195210 + 9784695 9784992 AluYa5 310 - 9 306 91728 297 chain 39640 chr17 81195210 + 9868444 9868995 L1PA8 5853 + 5297 5853 69837 47 0 2 50 0 2 68 0 4 93 2 1 18 0 4 22 2 0 71 8 7 6 1 0 48 2 1 19 2 1 92 chain 76785 chr17 81195210 + 9895924 9896763 L1PA3long 6157 - 1 840 45044 839 chain 129150 chr17 81195210 + 9896763 9898169 L1PA3long 6157 + 3911 5318 28279 1274 0 2 120 1 0 11 chain 40472 chr17 81195210 + 9899414 9899881 L1PA4 6152 + 5664 6141 68633 84 0 3 350 0 7 33 chain 51057 chr17 81195210 + 9905729 9906306 L1PA5 6144 - 0 577 58276 577 chain 27696 chr17 81195210 + 9912355 9912653 AluYa5 310 + 0 299 94059 132 1 0 147 0 2 18 chain 4816 chr17 81195210 + 9914215 9914292 MER58A 224 - 105 178 197164 54 9 5 14 chain 4114 chr17 81195210 + 9949180 9949310 MER113A 284 - 66 199 205727 23 38 35 26 18 24 25 chain 130961 chr17 81195210 + 9960089 9961564 SVA_C 1631 + 1 1614 27873 19 0 15 173 4 0 589 0 128 93 1 0 596 chain 4812 chr17 81195210 + 9974211 9974288 MADE1 96 - 0 96 197209 41 12 31 24 chain 22662 chr17 81195210 + 9998867 9999138 AluSc5 308 + 11 299 117262 181 0 17 90 chain 3108 chr17 81195210 + 10010804 10010840 LTR32 486 - 155 191 222773 36 chain 21613 chr17 81195210 + 10023785 10024039 AluSq10 312 + 40 293 121720 64 1 0 189 chain 5438 chr17 81195210 + 10079123 10079195 MLT1B 390 - 281 352 190622 4 1 0 67 chain 22841 chr17 81195210 + 10084400 10084687 AluSc8 310 + 4 295 116390 115 6 10 166 chain 4530 chr17 81195210 + 10086525 10086576 MER5A1 166 + 64 115 200457 51 chain 7635 chr17 81195210 + 10094046 10094202 MER30 238 - 0 164 173320 48 8 5 26 6 7 20 12 0 12 5 27 19 chain 13276 chr17 81195210 + 10109728 10109869 L1PA3long 6157 + 6001 6142 147191 141 chain 8374 chr17 81195210 + 10115758 10115854 MER41B 635 - 539 635 169006 96 chain 11397 chr17 81195210 + 10133708 10133920 THE1B 368 + 154 368 154711 15 5 4 28 45 48 119 chain 66289 chr17 81195210 + 10160093 10161004 L1PA8 5853 + 5013 5853 49960 385 82 0 164 1 0 46 2 0 70 26 24 34 0 17 7 1 0 93 chain 13252 chr17 81195210 + 10170242 10170425 THE1B 368 - 29 215 147279 109 1 0 16 1 5 7 0 1 28 1 0 20 chain 21320 chr17 81195210 + 10184612 10184968 THE1D 372 - 0 372 122800 33 0 1 82 38 50 50 2 17 5 3 0 83 9 0 51 chain 13912 chr17 81195210 + 10184987 10185160 L1MB3 1562 - 1263 1440 144876 4 0 1 150 0 3 19 chain 21039 chr17 81195210 + 10190748 10191048 L1P4 1494 - 1096 1396 123767 127 6 8 118 1 0 20 3 2 25 chain 24505 chr17 81195210 + 10194940 10195315 THE1B 368 + 0 368 107517 13 2 0 34 0 1 113 36 32 11 3 0 6 0 3 81 1 0 68 1 0 6 chain 5218 chr17 81195210 + 10200957 10201059 HAL1-2a_MD 234 - 109 225 192848 29 3 0 5 8 39 31 14 0 12 chain 54882 chr17 81195210 + 10206914 10207578 L1PA7 6471 + 5780 6454 55782 5 0 3 202 0 3 209 0 4 248 chain 29093 chr17 81195210 + 10230307 10230617 AluYa5 310 - 0 310 88580 310 chain 4475 chr17 81195210 + 10261730 10261783 MER5A 189 + 1 54 201061 53 chain 24110 chr17 81195210 + 10277939 10278220 AluSp 311 - 17 298 109693 281 chain 2790 chr17 81195210 + 10301538 10301578 MIR 256 + 110 147 228878 31 3 0 6 chain 22235 chr17 81195210 + 10341631 10342133 THE1C 375 - 0 375 119191 26 1 0 61 150 16 58 45 46 48 3 0 33 1 11 76 chain 29450 chr17 81195210 + 10369081 10369390 AluYa5 310 - 1 310 86841 309 chain 7679 chr17 81195210 + 10375800 10376073 L1MA8 2339 + 2012 2261 173049 51 99 83 11 2 3 28 13 7 34 12 10 18 1 0 4 chain 26032 chr17 81195210 + 10384262 10384635 THE1C 375 - 0 375 99894 16 10 9 54 0 2 63 18 18 94 1 2 117 chain 68038 chr17 81195210 + 10388283 10389363 MER11B 1079 - 0 1079 49233 24 8 7 59 2 4 105 0 1 51 95 90 19 1 0 8 0 7 109 5 0 8 5 11 32 8 8 12 0 1 15 23 11 23 18 17 83 1 0 11 0 5 304 0 3 51 chain 6231 chr17 81195210 + 10439541 10439623 L1PB1 5432 + 5344 5423 183310 26 1 0 22 1 0 12 1 0 19 chain 22941 chr17 81195210 + 10441707 10441977 AluY 311 + 31 298 115901 92 3 0 175 chain 84460 chr17 81195210 + 10444101 10445150 MER11B 1079 + 0 1057 41735 537 0 1 4 6 5 26 0 1 37 2 3 40 0 1 111 6 8 105 0 1 149 0 2 26 chain 73614 chr17 81195210 + 10456793 10457592 L1PA4 6152 - 1 801 46722 149 0 1 650 chain 25100 chr17 81195210 + 10481829 10482127 AluSp 311 + 4 302 104290 298 chain 4060 chr17 81195210 + 10499931 10499979 MER5B 177 - 129 177 206481 48 chain 25529 chr17 81195210 + 10512854 10513153 AluSp 311 - 12 311 102100 299 chain 23151 chr17 81195210 + 10515233 10515501 AluY 311 + 38 308 114886 86 1 3 181 chain 24886 chr17 81195210 + 10519507 10519800 AluY 311 + 0 292 105431 125 6 1 142 0 4 20 chain 27402 chr17 81195210 + 10532355 10532720 L1PA8 5853 - 15 371 94959 77 2 1 19 2 1 42 2 0 11 7 5 72 2 0 46 1 0 82 chain 11581 chr17 81195210 + 10605340 10605506 Tigger4a 237 + 60 236 153977 89 0 9 20 5 6 40 1 0 6 0 1 5 chain 4490 chr17 81195210 + 10657664 10657716 MIRb 242 + 68 120 200900 52 chain 2627 chr17 81195210 + 10700198 10700342 MER58A 224 - 16 161 231340 27 100 101 17 chain 15727 chr17 81195210 + 10712402 10712760 THE1C 375 + 0 360 139185 15 2 0 21 86 78 15 6 10 19 0 11 9 3 4 46 4 6 12 9 3 111 chain 2715 chr17 81195210 + 10759329 10759361 MER3 215 + 66 99 229945 23 0 1 9 chain 46743 chr17 81195210 + 10763138 10763678 L1PA5 6144 - 0 538 61419 11 3 1 526 chain 27268 chr17 81195210 + 10767664 10768020 THE1A 353 + 0 353 95378 108 1 0 94 1 0 17 1 0 134 chain 21418 chr17 81195210 + 10770681 10771006 THE1B 368 + 20 368 122454 24 16 31 48 0 1 52 1 0 130 19 27 35 chain 35067 chr17 81195210 + 10771910 10772356 L1PA8 5853 - 0 440 76095 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 18 0 1 27 1 0 149 chain 27414 chr17 81195210 + 10776121 10776435 L1PA8A 6298 - 14 328 94926 314 chain 95667 chr17 81195210 + 10806794 10807855 L1PA3long 6157 - 0 1063 37910 1031 0 1 26 0 1 4 chain 76118 chr17 81195210 + 10807855 10808692 L1PA3long 6157 + 4227 5097 45223 426 0 33 411 chain 22890 chr17 81195210 + 10817595 10817897 AluSq4 311 + 11 308 116145 37 0 1 5 7 0 77 10 11 166 chain 53250 chr17 81195210 + 10820588 10821657 MER4E 760 + 0 752 56858 22 19 21 75 322 0 88 0 5 67 4 0 7 3 7 16 0 1 79 0 1 144 6 4 16 5 4 144 1 0 51 chain 4561 chr17 81195210 + 10836263 10836319 MER20 218 - 162 218 200099 56 chain 11205 chr17 81195210 + 10925789 10925944 L1PB2 3958 + 3682 3834 155400 71 2 0 18 9 8 55 chain 29347 chr17 81195210 + 10934019 10934328 AluYa5 310 - 1 310 87312 309 chain 58292 chr17 81195210 + 10937869 10938506 L1PA4 6152 + 5501 6143 53811 497 0 4 36 0 1 104 chain 52123 chr17 81195210 + 10947451 10948042 LTR10C 591 + 0 591 57545 591 chain 4042 chr17 81195210 + 10949932 10950011 L1MB5 1630 + 1435 1516 206766 31 18 20 30 chain 18992 chr17 81195210 + 10955906 10956143 MER47A 366 + 36 273 130132 237 chain 11342 chr17 81195210 + 10957078 10957266 MER53 195 + 0 195 154916 104 2 4 29 1 4 13 14 16 25 chain 46190 chr17 81195210 + 10970487 10971013 L1PA4 6152 - 1 528 61856 112 0 1 31 5 6 260 1 0 117 chain 99615 chr17 81195210 + 10971014 10972110 L1PA4 6152 + 4519 5622 36881 139 0 1 518 0 2 125 0 4 314 chain 10664 chr17 81195210 + 10972902 10973056 L1MA10 1535 - 234 384 157547 67 10 6 77 chain 5980 chr17 81195210 + 10980013 10980085 MER72 723 - 7 79 185425 72 chain 27869 chr17 81195210 + 10984315 10984623 L1PA4 6152 - 1 309 93458 308 chain 22948 chr17 81195210 + 10992553 10992841 AluY 311 + 2 289 115870 129 1 2 21 7 5 130 chain 8387 chr17 81195210 + 11007897 11007989 L1PA4 6152 + 5847 5939 168919 92 chain 29150 chr17 81195210 + 11014108 11014496 L1PA8 5853 + 5467 5852 88312 99 0 2 110 13 11 53 1 0 18 1 0 77 1 0 15 chain 23935 chr17 81195210 + 11029161 11029466 AluY 311 + 11 297 110718 121 0 1 96 20 0 68 chain 11445 chr17 81195210 + 11031470 11031636 L1MB3 1562 + 1237 1402 154515 110 12 11 44 chain 33947 chr17 81195210 + 11054234 11054884 LTR12_ 688 - 159 688 77696 172 117 16 10 2 5 30 48 49 67 25 1 179 chain 6412 chr17 81195210 + 11060874 11060951 7SLRNA 320 + 103 180 181932 77 chain 393644 chr17 81195210 + 11066854 11071947 L1PA8 5853 + 50 5853 10332 21 2 0 11 1 0 13 51 16 51 0 1 4 6 5 130 18 6 281 0 1 5 8 7 63 0 1 161 14 17 167 2 1 127 1 0 449 5 1 401 0 1 34 8 9 447 0 4 73 70 844 420 0 1 35 0 1 11 0 1 278 0 6 60 0 1 148 5 1 644 2 0 384 20 4 139 0 1 4 1 0 21 1 0 46 2 0 74 1 0 6 1 0 7 1 2 43 2 1 10 13 12 90 chain 42213 chr17 81195210 + 11080124 11080637 MER41A 554 - 41 554 66385 56 1 0 117 0 1 339 chain 13134 chr17 81195210 + 11086991 11087144 L1PA5 6144 - 258 411 147709 153 chain 11853 chr17 81195210 + 11087151 11087288 L1PA5 6144 + 5989 6123 152819 9 3 0 125 chain 45641 chr17 81195210 + 11102066 11102632 MER41A 554 + 0 554 62361 236 7 0 126 11 8 51 2 0 133 chain 3918 chr17 81195210 + 11107274 11107329 MER50C 576 - 14 69 208579 36 0 1 12 1 0 6 chain 6789 chr17 81195210 + 11112397 11112654 LTR12 884 - 507 653 179034 39 152 1 20 0 41 29 1 0 16 chain 24669 chr17 81195210 + 11129515 11129821 AluY 311 + 0 290 106611 31 0 1 94 17 0 164 chain 3440 chr17 81195210 + 11154339 11154393 MIRb 242 - 119 175 216372 12 4 6 38 chain 4790 chr17 81195210 + 11168627 11168795 MER5B 177 - 0 156 197461 53 96 84 19 chain 25902 chr17 81195210 + 11185722 11186022 L1PA6 6164 - 2 304 100426 9 0 2 291 chain 7286 chr17 81195210 + 11195682 11195772 L1PA8 5853 + 5763 5853 175543 90 chain 26749 chr17 81195210 + 11205169 11205513 THE1A 353 - 11 353 97168 231 1 0 26 8 7 78 chain 15356 chr17 81195210 + 11225079 11225300 MER30 238 + 0 237 140325 94 5 28 6 4 0 71 3 0 38 chain 37508 chr17 81195210 + 11254128 11254624 L1PA8 5853 + 5363 5853 72803 176 0 1 24 1 0 41 5 3 70 2 1 14 1 0 47 2 1 24 2 1 87 chain 38127 chr17 81195210 + 11263154 11263938 L1PA8 5853 + 5215 5682 71945 266 2 1 40 0 1 41 1 0 41 5 3 38 314 0 36 chain 11733 chr17 81195210 + 11263939 11264113 L1PA8 5853 + 5682 5853 153329 5 1 0 45 10 9 19 2 1 92 chain 6985 chr17 81195210 + 11268136 11268229 L1ME2z 1083 - 526 617 177581 52 2 0 39 chain 19318 chr17 81195210 + 11299713 11299936 L1PA8 5853 - 405 628 129184 223 chain 9176 chr17 81195210 + 11299936 11300047 L1PA8 5853 + 5570 5679 164675 40 2 0 69 chain 13511 chr17 81195210 + 11300048 11300224 L1PA8 5853 + 5679 5853 146319 14 1 0 47 2 1 112 chain 4739 chr17 81195210 + 11310402 11310480 MIR 256 - 0 78 198025 11 0 11 7 11 0 49 chain 18044 chr17 81195210 + 11322337 11322543 L1PA4 6152 + 5947 6151 132748 100 2 0 104 chain 39175 chr17 81195210 + 11336404 11336871 L1PA7 6471 - 5 473 70497 142 1 0 319 0 2 5 chain 25234 chr17 81195210 + 11362240 11362553 AluY 311 + 0 300 103566 72 6 0 53 7 0 175 chain 5017 chr17 81195210 + 11369754 11369813 MLT1D 503 - 388 447 194954 59 chain 52703 chr17 81195210 + 11377071 11377803 L1PA8 5853 - 0 920 57186 93 1 0 19 2 1 42 6 5 14 2 1 70 2 0 44 1 0 44 3 0 35 0 1 6 7 205 260 3 2 78 chain 143961 chr17 81195210 + 11380740 11382291 L1PA2 6032 - 5 1556 25482 1551 chain 7778 chr17 81195210 + 11382291 11382373 L1PA2 6032 + 4392 4474 171229 82 chain 28096 chr17 81195210 + 11382582 11382943 L1PA8 5853 + 5499 5853 92663 65 2 1 43 2 0 71 1 0 12 1 0 49 2 1 19 1 0 93 chain 3643 chr17 81195210 + 11393149 11393239 MER20 218 + 127 193 212921 24 34 10 32 chain 3477 chr17 81195210 + 11406437 11406496 MIR3 191 - 40 105 215694 11 7 14 7 1 0 33 chain 28040 chr17 81195210 + 11414402 11414767 L1PA8 5853 + 5494 5852 92853 70 1 0 45 2 0 69 2 1 9 2 1 6 1 0 49 1 0 16 1 0 7 0 1 84 chain 3866 chr17 81195210 + 11467742 11467793 MADE1 96 - 1 49 209362 42 3 0 6 chain 24091 chr17 81195210 + 11470860 11471163 AluSc 308 + 0 297 109791 12 1 0 231 4 0 14 1 0 40 chain 42224 chr17 81195210 + 11478141 11478684 MER41A 554 + 11 554 66370 26 5 6 468 1 0 43 chain 5445 chr17 81195210 + 11520078 11520140 L1PA6 6164 + 5929 5991 190568 62 chain 25113 chr17 81195210 + 11532428 11532704 L1PA4 6152 - 12 288 104208 276 chain 17129 chr17 81195210 + 11533786 11534030 L1PA8 5853 + 5613 5853 135235 69 1 0 6 1 0 52 2 1 19 15 14 79 chain 23332 chr17 81195210 + 11545573 11545878 AluSq2 311 + 0 293 114016 110 1 2 39 14 1 141 chain 48424 chr17 81195210 + 11558474 11559753 L1PB1 5432 - 136 825 60163 16 1 0 44 1 0 17 2 1 49 3 1 9 2 0 3 2 0 12 1 0 10 1 0 20 587 11 94 2 1 195 0 2 10 1 0 175 4 1 18 chain 12061 chr17 81195210 + 11558981 11559174 L1PB1 5432 + 5114 5296 151943 20 1 0 12 1 0 6 11 7 9 2 0 52 2 1 15 1 0 45 1 0 15 chain 42549 chr17 81195210 + 11562618 11563239 LTR14B 630 + 9 630 65964 247 12 5 10 0 7 73 0 21 19 0 9 14 50 20 196 chain 5511 chr17 81195210 + 11634217 11634342 HAL1-2a_MD 234 - 18 165 189938 13 6 0 19 2 54 33 21 0 12 3 0 16 chain 53136 chr17 81195210 + 11634727 11635326 L1PA4 6152 - 11 610 56934 38 2 0 64 0 1 414 0 1 81 chain 6573 chr17 81195210 + 11637463 11637540 MER5A1 166 + 32 109 180677 77 chain 7569 chr17 81195210 + 11649486 11649586 THE1C 375 - 33 138 173738 17 3 8 80 chain 42216 chr17 81195210 + 11658186 11658852 L1PA14 3548 - 174 826 66380 33 11 6 71 0 1 44 11 10 30 22 27 15 1 0 6 2 0 13 8 4 109 2 0 4 2 0 48 2 0 14 3 1 105 0 1 110 chain 9417 chr17 81195210 + 11659664 11659768 THE1B 368 - 262 366 163475 104 chain 9164 chr17 81195210 + 11663458 11663570 L1PB4 2604 - 247 359 164738 112 chain 23969 chr17 81195210 + 11670007 11670302 AluSg7 307 + 8 297 110520 134 7 1 154 chain 16802 chr17 81195210 + 11686410 11686612 MER107 203 - 0 203 136111 12 1 2 189 chain 21621 chr17 81195210 + 11695327 11695601 AluSp 311 + 11 292 121693 115 10 17 149 chain 17832 chr17 81195210 + 11698196 11698397 L1PA5 6144 + 5939 6140 133296 201 chain 22371 chr17 81195210 + 11707921 11708206 AluY 311 + 8 298 118620 26 3 6 8 1 2 76 0 1 171 chain 35619 chr17 81195210 + 11744726 11745189 MER4A 717 - 247 717 75386 48 0 16 71 12 3 332 chain 41881 chr17 81195210 + 11745697 11746254 MLT2A2 560 - 0 560 66787 13 0 1 133 4 15 226 12 3 169 chain 187171 chr17 81195210 + 11748323 11750368 L1PA3long 6157 - 0 2047 20320 5 1 0 838 0 4 675 1 0 525 chain 556796 chr17 81195210 + 11764356 11770484 L1PA3long 6157 - 11 6153 633 248 0 2 582 0 4 233 0 2 1808 1 0 4 0 1 1318 3 6 746 0 3 1185 chain 35688 chr17 81195210 + 11796707 11797194 L1PA8 5853 + 5378 5853 75289 53 9 0 133 1 0 46 2 0 52 13 17 9 1 0 8 1 0 44 2 1 19 2 1 92 chain 5960 chr17 81195210 + 11801748 11801849 MLT1C 463 - 298 400 185597 36 18 19 47 chain 17988 chr17 81195210 + 11810392 11810925 MER4B 649 - 330 613 132890 39 0 1 74 299 48 121 chain 22549 chr17 81195210 + 11823352 11823627 AluSp 311 - 13 286 117808 53 2 0 220 chain 48607 chr17 81195210 + 11830166 11830889 L1PA11 4918 - 351 1052 60030 13 1 0 14 14 10 11 5 0 11 4 0 20 1 0 13 2 0 68 2 0 13 11 9 60 6 0 53 5 8 180 0 1 74 0 1 142 chain 4462 chr17 81195210 + 11833901 11833949 MER5A 189 + 21 69 201203 48 chain 3651 chr17 81195210 + 11853606 11853684 L1MC1 2226 - 78 143 212781 13 1 0 8 9 0 5 1 0 20 3 1 18 chain 29819 chr17 81195210 + 11875072 11875506 LTR7Y 441 + 0 441 85377 103 9 0 57 68 84 197 chain 257083 chr17 81195210 + 11875506 11878749 HERVH-int 3825 + 0 3118 15873 501 0 3 28 5 0 38 1 0 10 1 0 24 92 0 14 1 0 13 3 0 7 21 0 11 29 7 35 43 21 11 6 4 52 1 0 21 20 0 325 0 13 337 0 5 121 0 6 74 8 35 299 0 10 428 0 1 616 9 11 13 1 0 24 chain 29745 chr17 81195210 + 11879830 11880264 LTR7Y 441 + 0 441 85674 103 9 0 57 68 84 197 chain 26857 chr17 81195210 + 11970012 11970293 AluYd8 298 - 17 298 96784 281 chain 3113 chr17 81195210 + 11974018 11974054 MER58A 224 + 47 83 222690 36 chain 5800 chr17 81195210 + 11974190 11974274 MLT1C 463 - 32 121 187145 63 5 10 16 chain 5976 chr17 81195210 + 11980415 11980485 U3 216 - 146 216 185458 70 chain 23689 chr17 81195210 + 12036031 12036381 MER84 505 - 59 432 112090 33 1 0 9 0 1 33 7 23 52 7 13 103 0 3 39 3 0 25 0 1 38 chain 14386 chr17 81195210 + 12050919 12051289 L1PB1 5432 + 5083 5422 143250 15 10 11 5 3 0 24 1 0 8 1 0 10 7 3 9 2 0 9 9 14 29 2 1 10 14 17 33 1 0 15 31 12 18 3 1 5 1 0 14 2 0 24 1 0 22 1 0 11 2 1 18 chain 26599 chr17 81195210 + 12052483 12052765 AluYa5 310 + 23 305 97668 282 chain 80535 chr17 81195210 + 12065162 12066610 L1PA16 3655 - 87 1243 43375 137 15 16 11 6 6 14 2 1 93 2 0 79 0 3 4 1 0 78 329 30 90 0 1 37 0 2 44 1 0 24 1 0 79 0 5 139 1 0 41 0 2 220 chain 4609 chr17 81195210 + 12073761 12073816 L1MA7 2200 - 251 306 199518 55 chain 39954 chr17 81195210 + 12083022 12083474 L1PA4 6152 - 1 462 69389 147 1 3 254 0 1 25 0 6 25 chain 8601 chr17 81195210 + 12089985 12090153 L1MA3 4352 - 0 159 167723 22 13 9 7 1 0 21 15 13 22 2 0 65 chain 24094 chr17 81195210 + 12097637 12098113 L1PB1 5432 + 5001 5427 109772 104 1 0 11 3 0 22 1 0 5 21 16 8 2 0 69 1 0 41 7 6 13 3 0 6 16 6 19 46 28 15 1 0 21 1 0 13 1 0 18 2 0 5 chain 5984 chr17 81195210 + 12103239 12103476 L1ME1 1623 + 1234 1484 185391 45 136 154 13 5 0 38 chain 106501 chr17 81195210 + 12124037 12125537 LTR12C 1709 + 0 1709 35123 50 3 0 5 25 29 129 4 1 83 0 1 40 0 43 78 8 6 146 4 5 34 0 119 68 1 0 234 0 47 99 42 11 125 1 0 154 0 4 70 23 54 74 chain 6097 chr17 81195210 + 12142571 12142653 LTR12D 1347 - 701 892 184444 18 1 110 63 chain 22541 chr17 81195210 + 12145025 12145332 L1PA8 5853 - 6 311 117843 86 2 1 19 2 1 51 1 0 7 1 0 74 4 7 41 1 0 18 chain 21362 chr17 81195210 + 12166624 12166876 L1PA4 6152 + 5880 6134 122645 115 0 1 42 0 1 95 chain 79223 chr17 81195210 + 12175590 12176567 L1PA8 5853 - 0 976 43938 92 2 1 19 2 1 50 1 0 8 1 0 20 0 1 51 2 0 21 0 2 23 1 0 454 0 1 100 0 2 130 chain 13277 chr17 81195210 + 12177696 12177894 Tigger2a 444 + 0 212 147184 104 1 10 24 5 8 43 4 6 17 chain 27080 chr17 81195210 + 12204027 12204396 MLT2A1 477 + 0 381 96003 18 0 1 84 0 1 65 4 1 12 1 2 20 0 1 43 1 2 87 0 6 28 0 4 6 chain 79889 chr17 81195210 + 12208620 12209515 L1PA3long 6157 - 0 899 43645 15 0 3 153 0 2 166 1 0 560 chain 399537 chr17 81195210 + 12234172 12239649 L1PB1 5432 - 10 5413 10114 18 1 0 8 1 4 6 4 0 16 1 0 24 2 0 14 8 5 18 17 8 6 1 0 15 1 0 43 1 0 16 2 1 53 2 0 7 30 22 24 14 11 470 1 0 12 3 0 11 2 0 5 0 6 93 0 1 5 1 0 331 1 0 70 4 5 265 0 4 100 0 4 350 1 2 527 1 0 169 0 4 81 0 1 93 2 0 21 0 1 41 19 0 214 3 4 185 5 6 73 0 2 13 15 9 77 0 4 109 49 17 177 24 28 76 43 35 9 1 0 217 16 17 186 11 12 162 0 4 298 0 1 437 18 13 27 chain 4230 chr17 81195210 + 12261076 12261121 MADE1 96 - 50 95 204173 45 chain 27811 chr17 81195210 + 12284027 12284330 AluYf4 310 - 7 310 93660 303 chain 11643 chr17 81195210 + 12284330 12284562 MER4D1 891 + 540 776 153729 116 62 55 22 6 17 26 chain 8214 chr17 81195210 + 12285301 12285425 MER41B 635 - 7 136 169870 63 15 20 46 chain 39408 chr17 81195210 + 12287438 12287985 LTR12_ 688 + 0 673 70153 25 9 8 45 0 41 44 26 9 182 0 103 216 chain 10933 chr17 81195210 + 12316942 12317178 L1PB1 5432 - 48 264 156473 14 1 0 24 2 0 13 10 7 18 28 16 11 1 0 41 6 5 14 2 1 23 0 1 28 chain 15099 chr17 81195210 + 12330415 12330619 MER2 342 + 131 329 141033 6 6 0 192 chain 26621 chr17 81195210 + 12347803 12348162 L1PA8 5853 + 5498 5853 97590 5 0 1 60 1 0 44 2 0 19 0 2 53 1 0 5 2 1 52 2 1 19 1 0 93 chain 560533 chr17 81195210 + 12353220 12359249 L1PA2 6032 - 1 6030 326 6029 chain 4579 chr17 81195210 + 12368231 12368302 L1MC1 2226 - 179 248 199884 54 3 1 14 chain 24007 chr17 81195210 + 12372560 12372845 AluSg7 307 - 15 296 110292 9 5 0 156 0 1 115 chain 46471 chr17 81195210 + 12390002 12390554 MLT2A2 560 - 0 553 61619 356 0 1 196 chain 6147 chr17 81195210 + 12394878 12394965 MLT1B 390 + 0 83 184013 25 7 3 55 chain 36910 chr17 81195210 + 12396913 12397411 MLT2A2 560 + 0 547 73645 307 9 41 49 5 16 53 0 6 29 1 0 4 0 1 41 chain 13241 chr17 81195210 + 12426709 12426997 Tigger3a 397 - 0 344 147319 42 84 82 115 0 10 10 15 63 22 chain 72106 chr17 81195210 + 12464115 12465232 L1PB1 5432 - 10 1102 47433 18 1 0 11 1 0 23 1 0 6 0 1 17 28 23 13 22 17 13 1 0 44 1 0 15 2 1 51 2 0 10 5 1 14 8 6 23 5 0 300 7 0 13 1 9 54 1 0 16 0 1 12 1 2 80 3 0 135 0 3 55 0 1 104 chain 26620 chr17 81195210 + 12497161 12497462 AluYa5 310 - 8 309 97598 301 chain 89347 chr17 81195210 + 12520757 12521886 L1PA8A 6298 - 7 1155 39864 110 1 0 9 0 1 195 0 1 485 2 1 174 14 31 29 11 13 99 chain 73433 chr17 81195210 + 12548254 12549098 L1PA6 6164 + 5261 6162 46821 724 1 58 119 chain 43934 chr17 81195210 + 12558626 12559096 L1HS 6032 + 5558 6028 64288 470 chain 2861 chr17 81195210 + 12565434 12565676 MLT1E1A 663 + 281 616 227668 21 184 279 24 2 0 11 chain 25307 chr17 81195210 + 12624064 12624360 AluY 311 + 8 304 103181 16 1 0 105 1 2 173 chain 3552 chr17 81195210 + 12629657 12629697 MER58A 224 - 147 187 214518 40 chain 24440 chr17 81195210 + 12631792 12632095 AluSp 311 - 15 311 107861 7 7 0 289 chain 13460 chr17 81195210 + 12687741 12687912 Tigger3a 397 + 143 313 146488 27 1 0 143 chain 50924 chr17 81195210 + 12690251 12690923 L1PA7 6471 - 1 627 58354 153 6 8 170 47 0 49 2 1 245 chain 13886 chr17 81195210 + 12714663 12714850 Tigger2 2703 - 240 431 144968 52 1 4 85 1 2 48 chain 3800 chr17 81195210 + 12736082 12736126 MER67A 545 - 501 545 210395 44 chain 22989 chr17 81195210 + 12756288 12756591 MLT2A2 560 - 9 348 115676 134 0 11 13 5 30 151 chain 17367 chr17 81195210 + 12775057 12775306 MSTA 426 + 158 404 134604 49 1 0 29 2 0 10 18 18 140 chain 25962 chr17 81195210 + 12778978 12779272 AluSq10 312 + 0 294 100163 294 chain 26854 chr17 81195210 + 12782321 12782815 L1PB1 5432 - 10 485 96791 18 1 0 13 1 0 21 1 0 22 2 0 16 1 0 5 3 1 13 10 1 12 2 0 4 1 0 14 0 8 38 1 0 15 2 1 38 32 26 12 1 0 10 1 0 20 4 3 5 0 3 55 5 6 95 chain 14032 chr17 81195210 + 12798717 12798882 L1PA5 6144 - 707 872 144450 165 chain 58916 chr17 81195210 + 12798886 12799574 L1PA5 6144 + 5449 6132 53444 57 0 1 84 0 1 215 1 0 191 6 0 134 chain 9372 chr17 81195210 + 12806937 12807116 L1PB1 5432 - 10 169 163701 31 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 16 6 6 2 0 15 1 0 18 chain 10354 chr17 81195210 + 12961202 12961381 MSTA 426 - 252 426 158885 23 1 0 7 12 11 28 1 2 81 9 5 17 chain 3416 chr17 81195210 + 12987822 12987859 LTR16C 481 + 200 237 216836 37 chain 3826 chr17 81195210 + 13003919 13003964 MER66B 489 - 385 430 209991 45 chain 23536 chr17 81195210 + 13005230 13005589 MER66B 489 + 108 470 112927 192 8 17 23 8 18 17 17 0 70 3 4 21 chain 20183 chr17 81195210 + 13005885 13006172 MER89 557 - 268 557 126584 39 0 1 33 15 17 7 1 0 192 chain 38692 chr17 81195210 + 13013590 13014047 L1PA5 6144 - 2 450 71160 7 9 0 441 chain 25891 chr17 81195210 + 13041141 13041517 THE1C 375 + 0 375 100479 138 11 15 26 0 3 11 11 5 80 1 0 72 1 0 25 chain 25545 chr17 81195210 + 13043017 13043364 THE1C 375 + 0 350 102020 176 18 22 79 2 1 72 chain 19605 chr17 81195210 + 13059666 13059878 AluYa5 310 - 5 218 128370 154 0 1 58 chain 10248 chr17 81195210 + 13067961 13068106 L1MA2 4263 + 3977 4114 159380 8 1 0 4 0 1 68 7 0 48 1 0 8 chain 66127 chr17 81195210 + 13077851 13078590 L1PA4 6152 + 5073 5812 50037 739 chain 28644 chr17 81195210 + 13109712 13110143 MER57A1 433 - 3 433 90546 108 19 22 23 0 1 117 28 27 66 4 0 66 chain 27172 chr17 81195210 + 13110337 13110847 L1PA15 4387 - 21 516 95688 10 1 0 27 5 0 16 3 1 20 4 0 19 22 19 32 6 5 9 4 0 23 2 1 44 10 9 27 1 0 73 7 18 81 1 0 41 4 2 18 chain 75676 chr17 81195210 + 13113593 13114697 L1PA13 3608 - 120 1209 45669 22 1 0 13 13 9 48 2 0 5 1 0 55 1 0 63 2 0 9 5 4 100 5 4 76 4 3 26 1 0 153 57 60 166 1 2 253 8 4 14 chain 28054 chr17 81195210 + 13153536 13153845 AluYf4 310 + 0 309 92810 309 chain 12973 chr17 81195210 + 13188110 13188284 MER4B 649 - 438 649 148338 37 1 39 98 1 0 37 chain 23876 chr17 81195210 + 13211597 13211879 AluSc 308 - 15 297 111045 282 chain 29356 chr17 81195210 + 13220495 13220804 AluYa5 310 - 1 310 87260 309 chain 21745 chr17 81195210 + 13221301 13221683 THE1D 372 - 0 364 121226 33 0 1 24 0 1 4 1 0 70 52 52 55 0 4 18 1 0 5 7 4 26 19 0 67 chain 22789 chr17 81195210 + 13236043 13236394 L1PA17 2846 - 153 490 116639 44 1 0 17 1 0 28 14 12 59 1 0 16 7 1 15 4 0 77 0 1 67 chain 20047 chr17 81195210 + 13238453 13238734 AluSq2 311 + 0 288 126986 20 1 10 104 1 0 94 17 16 44 chain 38304 chr17 81195210 + 13250678 13251152 LTR10F 562 - 0 562 71701 43 0 1 13 1 7 222 0 11 34 0 42 12 2 30 147 chain 24922 chr17 81195210 + 13271852 13273114 L1PB1 5432 + 4875 5423 105212 228 779 65 48 6 5 15 1 0 22 63 50 6 0 1 11 3 1 5 1 0 14 15 34 12 1 0 12 1 0 19 chain 2693 chr17 81195210 + 13338736 13338765 MER58A 224 - 146 175 230310 29 chain 93617 chr17 81195210 + 13353972 13355423 L1PB1 5432 + 3998 5423 38470 348 0 1 157 9 7 58 17 35 24 9 6 178 3 1 228 6 5 57 1 2 9 5 0 24 1 0 8 1 0 10 14 6 5 0 2 33 4 0 18 2 1 11 5 4 45 37 27 18 1 0 5 12 10 5 2 0 23 2 1 22 1 0 11 2 1 11 1 0 8 chain 18386 chr17 81195210 + 13357860 13358075 L1PA8A 6298 + 6032 6247 131829 215 chain 22982 chr17 81195210 + 13368564 13368826 AluSp 311 + 21 283 115708 262 chain 3581 chr17 81195210 + 13403647 13403690 MADE1 96 + 53 96 213959 43 chain 23610 chr17 81195210 + 13415398 13415644 AluYb9 318 + 64 310 112522 246 chain 61022 chr17 81195210 + 13451924 13452728 LTR12 884 + 0 869 52318 94 0 2 3 0 66 61 1 0 49 2 1 101 2 0 47 3 4 21 3 0 7 4 7 406 chain 17354 chr17 81195210 + 13454442 13454664 AluSc5 308 + 59 279 134645 72 2 0 148 chain 27316 chr17 81195210 + 13533980 13534299 L1PA5 6144 + 5816 6135 95219 319 chain 9634 chr17 81195210 + 13552083 13552210 MLT1B 390 - 0 126 162420 90 1 0 36 chain 10257 chr17 81195210 + 13555132 13555632 MER30 238 - 0 213 159336 50 1 6 18 353 61 78 chain 94972 chr17 81195210 + 13567398 13568977 HSMAR1 1287 + 2 1287 38108 95 22 28 88 2 16 130 312 0 215 1 0 542 24 23 148 chain 12089 chr17 81195210 + 13580153 13580317 L1PBa 3878 + 3572 3735 151840 145 2 1 17 chain 119558 chr17 81195210 + 13592696 13594111 L1PA7 6471 + 5037 6464 31196 538 0 2 44 2 0 92 0 8 114 0 1 300 0 1 65 1 3 103 2 1 11 1 2 142 chain 3968 chr17 81195210 + 13596607 13596657 MER82 654 - 452 502 207868 50 chain 17553 chr17 81195210 + 13599665 13600020 L1PB 1623 + 1234 1575 134115 46 1 0 5 0 1 11 0 3 18 6 23 87 0 1 17 1 0 7 2 1 30 1 0 4 3 0 14 4 0 13 1 0 11 52 28 21 chain 171573 chr17 81195210 + 13600090 13602436 L1PBa 3878 - 1449 3794 21873 22 0 4 683 3 1 93 0 4 8 14 13 470 1 0 143 3 4 195 46 47 221 1 0 192 10 14 38 0 1 36 3 0 5 0 1 12 10 9 48 13 9 11 1 0 45 1 0 10 2 0 6 chain 28511 chr17 81195210 + 13622961 13623267 AluYa5 310 - 5 310 91144 187 1 0 118 chain 17397 chr17 81195210 + 13648603 13648999 MSTA 426 + 5 426 134518 31 6 12 14 0 1 26 58 66 49 5 14 6 6 0 10 30 29 37 14 22 104 chain 3734 chr17 81195210 + 13654279 13654321 MER58A 224 + 49 91 211410 42 chain 7131 chr17 81195210 + 13671412 13671520 L1PB4 2604 + 2465 2572 176533 85 11 10 12 chain 22489 chr17 81195210 + 13684311 13684680 THE1B 368 - 0 368 118070 18 3 0 5 18 21 151 2 1 81 0 14 7 37 23 47 chain 21440 chr17 81195210 + 13695274 13695543 AluSc5 308 + 25 304 122370 115 1 11 153 chain 12654 chr17 81195210 + 13712361 13712527 Tigger2 2703 + 2476 2642 149629 153 0 1 5 1 0 7 chain 50172 chr17 81195210 + 13730900 13731541 L1PA8 5853 - 6 641 58886 86 2 1 19 2 1 52 1 0 9 2 1 10 0 1 55 6 4 44 1 0 352 chain 22599 chr17 81195210 + 13744401 13744668 AluY 311 + 38 306 117588 94 0 1 173 chain 505006 chr17 81195210 + 13758812 13764916 L1PA5 6144 + 0 6137 6535 131 47 63 15 8 7 204 3 2 109 4 0 280 0 17 124 25 0 213 13 4 320 8 10 814 6 5 658 0 1 242 4 41 248 0 1 118 7 0 331 5 7 36 2 1 42 0 10 286 1 0 1019 1 0 605 2 0 173 chain 26132 chr17 81195210 + 13788304 13788611 AluY 311 + 3 311 99473 129 0 1 178 chain 114840 chr17 81195210 + 13812675 13814209 THE1A-int 1579 + 0 1569 32836 41 68 3 12 0 75 175 0 1 343 0 1 4 0 2 6 8 29 877 chain 36375 chr17 81195210 + 13816930 13817821 MER4B 649 + 8 619 74391 23 5 0 58 1 0 68 0 42 145 306 12 41 80 56 104 3 5 57 chain 39585 chr17 81195210 + 13820306 13820762 LTR2 463 + 0 456 69911 456 chain 30781 chr17 81195210 + 13858486 13858869 MLT2A1 477 + 0 380 82902 169 4 1 210 chain 8935 chr17 81195210 + 13876291 13876470 MER51A 677 + 142 471 165952 28 16 15 13 10 91 12 1 73 92 2 0 5 chain 35891 chr17 81195210 + 13878264 13878727 LTR2 463 - 0 463 75021 88 14 15 57 7 6 297 chain 27738 chr17 81195210 + 13879857 13880158 AluYd8 298 + 0 298 93912 111 3 0 187 chain 24995 chr17 81195210 + 13882957 13883252 L1PA5 6144 + 5847 6142 104819 295 chain 24007 chr17 81195210 + 13895650 13895923 AluYc 301 - 26 299 110288 273 chain 6119 chr17 81195210 + 13896982 13897155 MER5A 189 - 0 177 184273 14 1 0 22 66 66 4 1 0 35 3 9 27 chain 11445 chr17 81195210 + 13904286 13904429 MSTA 426 + 270 414 154513 64 0 1 79 chain 4719 chr17 81195210 + 13917205 13917258 MER1B 344 + 291 344 198291 53 chain 3980 chr17 81195210 + 13926390 13926436 MER83 447 - 42 89 207684 5 0 1 41 chain 3700 chr17 81195210 + 13939500 13939544 MSTA 426 - 2 46 211935 44 chain 5663 chr17 81195210 + 13944986 13945074 MLT2B2 565 + 486 565 188453 6 0 1 21 10 0 51 chain 16710 chr17 81195210 + 13971159 13971351 L1PA5 6144 - 25 215 136375 147 3 1 42 chain 27570 chr17 81195210 + 14018658 14019155 L1PB4 2604 + 2047 2552 94432 72 0 2 31 10 11 42 2 0 92 16 17 62 7 9 59 65 69 39 chain 86228 chr17 81195210 + 14049401 14050614 L1MA2 4263 + 2880 4056 41068 28 6 7 89 0 2 9 36 4 283 1 9 252 2 0 4 2 0 17 8 4 67 8 7 87 0 1 42 17 14 11 3 0 141 1 0 8 1 0 90 chain 120983 chr17 81195210 + 14071196 14072811 THE1D-int 1627 - 0 1627 30699 50 1 0 90 8 4 234 1 2 227 1 14 28 10 6 39 0 4 133 1 2 5 1 0 29 11 7 176 2 1 5 1 0 278 0 7 272 0 2 12 chain 3452 chr17 81195210 + 14088213 14088257 MER5A 189 - 127 177 216171 27 0 6 17 chain 4394 chr17 81195210 + 14091433 14091621 Charlie26a 274 - 4 189 202025 35 0 1 20 110 107 17 1 0 5 chain 3980 chr17 81195210 + 14141538 14141584 MER83 447 + 358 405 207683 41 0 1 5 chain 3316 chr17 81195210 + 14159685 14159721 MLT1A 405 - 276 312 218659 36 chain 24499 chr17 81195210 + 14186896 14187226 AluY 311 + 1 301 107544 76 27 0 56 1 0 159 2 0 9 chain 5276 chr17 81195210 + 14189110 14189250 MER20 218 - 70 218 192246 23 0 15 18 6 9 36 44 34 13 chain 11161 chr17 81195210 + 14195683 14195814 Tigger3a 397 - 71 202 155585 131 chain 34856 chr17 81195210 + 14195866 14196289 L1PA5 6144 - 3 423 76399 12 3 0 141 1 0 4 3 4 259 chain 25613 chr17 81195210 + 14229964 14230266 AluSq 315 + 11 313 101661 302 chain 16165 chr17 81195210 + 14266014 14266222 MER30 238 + 36 232 137859 64 12 0 132 chain 12302 chr17 81195210 + 14279286 14279583 L1MB3 1562 - 81 346 151005 13 1 0 29 2 0 6 95 68 14 1 0 108 9 8 19 chain 9946 chr17 81195210 + 14282946 14283154 L1MB3 1562 - 41 252 160851 74 51 56 9 1 0 27 4 3 42 chain 24920 chr17 81195210 + 14312959 14313329 THE1B 368 - 0 368 105223 169 2 1 25 2 1 14 18 15 101 0 5 24 3 1 12 chain 23608 chr17 81195210 + 14328908 14329208 AluY 311 + 2 305 112529 51 1 4 75 0 1 136 7 6 30 chain 28826 chr17 81195210 + 14333887 14334194 AluYb8 318 + 0 307 89779 307 chain 24049 chr17 81195210 + 14340998 14341307 AluSp 311 - 15 311 110046 8 17 0 13 0 1 180 0 3 91 chain 32220 chr17 81195210 + 14344474 14344837 L1PA5 6144 - 0 363 80483 363 chain 20920 chr17 81195210 + 14348871 14349119 AluY 311 + 38 287 124212 94 0 1 154 chain 5829 chr17 81195210 + 14353335 14353489 MLT2C2 476 + 251 404 186873 25 1 6 22 13 16 31 43 34 19 chain 90265 chr17 81195210 + 14375038 14376079 L1PA7 6471 - 1 1041 39552 849 1 0 191 chain 8707 chr17 81195210 + 14379546 14379658 L1MB5 1630 + 1186 1299 167156 22 0 1 90 chain 89272 chr17 81195210 + 14379670 14380816 L1PA8 5853 + 4694 5853 39897 140 0 1 16 0 13 145 6 8 79 0 3 191 0 1 273 1 0 45 5 3 67 1 0 8 6 5 48 2 1 19 1 0 93 chain 63234 chr17 81195210 + 14393785 14394624 L1PA8 5853 - 0 834 51347 93 6 5 14 2 1 48 5 4 9 2 1 70 2 0 34 11 10 37 16 17 169 0 1 321 chain 379410 chr17 81195210 + 14433444 14437920 L1PA6 6164 - 4 6164 10773 845 1 0 1172 0 1 134 16 20 26 1 0 477 0 1 184 1 0 110 0 1 117 0 1 10 1 0 51 0 1 423 0 4 157 3 0 91 12 0 135 8 0 105 0 1 272 0 1697 124 chain 11994 chr17 81195210 + 14443443 14443585 MER50 708 - 23 165 152226 142 chain 3198 chr17 81195210 + 14449808 14449893 L1MB3 1562 - 150 236 220954 23 37 38 25 chain 11917 chr17 81195210 + 14451987 14452118 L1PA5 6144 - 7 138 152527 131 chain 29384 chr17 81195210 + 14453169 14453479 AluYa5 310 - 0 310 87148 310 chain 462618 chr17 81195210 + 14501510 14507244 L1PA8 5853 + 108 5849 8301 197 0 4 48 5 15 262 7 0 7 1 7 371 3 0 257 1 0 139 0 1 379 1 0 231 7 1 221 1 0 523 0 4 95 2 1 225 14 0 22 0 2 34 0 1 65 0 1 11 8 10 353 0 2 139 0 2 632 7 8 471 0 6 151 0 1 333 2 1 126 10 15 28 11 12 42 1 0 44 2 0 74 1 0 6 16 1 8 0 14 32 1 0 15 8 7 84 chain 31613 chr17 81195210 + 14508135 14508560 MER57A1 433 + 0 433 81463 84 0 4 194 0 1 17 19 22 111 chain 3823 chr17 81195210 + 14519438 14519528 L1MC2 1988 - 525 616 210035 45 30 31 15 chain 123428 chr17 81195210 + 14545413 14547035 L1PB1 5432 + 3457 5078 29906 41 8 6 20 0 3 5 25 22 108 2 3 60 12 8 8 0 1 190 2 5 25 0 1 661 9 6 75 0 2 371 chain 27629 chr17 81195210 + 14566252 14566623 MLT2A1 477 - 93 472 94268 139 0 2 8 2 0 38 2 3 21 4 8 30 0 3 127 chain 108168 chr17 81195210 + 14580338 14581814 L1PA8 5853 - 0 1490 34662 90 1 0 22 7 6 33 0 7 7 27 18 60 11 10 38 1 0 23 0 7 437 1 0 86 20 34 612 chain 31082 chr17 81195210 + 14581814 14582236 L1PA8 5853 + 3911 4335 82378 146 8 20 67 0 1 166 18 7 17 chain 28305 chr17 81195210 + 14606867 14607601 MER57A1 433 - 0 425 91925 57 10 9 83 307 25 12 28 2 237 chain 30895 chr17 81195210 + 14624300 14624656 L1PA5 6144 + 5775 6132 82687 221 0 1 135 chain 70224 chr17 81195210 + 14624672 14625768 L1PREC2 3366 + 1970 3041 48303 216 10 21 181 0 13 98 23 13 165 3 0 40 5 9 26 3 0 54 1 0 38 0 1 5 1 0 4 3 0 13 29 21 17 10 5 12 2 0 13 0 1 15 38 21 34 9 7 28 chain 3595 chr17 81195210 + 14647307 14647355 MER44B 551 - 1 48 213744 9 1 0 38 chain 6615 chr17 81195210 + 14661937 14662014 AluYg6 310 + 0 75 180342 6 2 0 69 chain 5813 chr17 81195210 + 14662539 14662615 MADE1 96 + 0 95 187011 29 0 18 8 0 1 39 chain 8286 chr17 81195210 + 14696867 14696967 MER57B2 428 + 7 107 169482 100 chain 4083 chr17 81195210 + 14702051 14702102 MER39B 650 - 155 206 206165 51 chain 34002 chr17 81195210 + 14702950 14703329 L1PA3long 6157 - 0 378 77614 19 2 0 353 0 1 5 chain 70888 chr17 81195210 + 14721591 14722658 L1PA15 4387 - 62 1128 47966 9 2 0 46 6 3 50 2 1 9 4 0 22 5 4 51 1 0 25 6 5 153 1 0 4 5 10 41 3 1 43 1 0 33 2 0 33 1 12 30 4 0 32 1 0 23 6 11 323 1 3 89 chain 4325 chr17 81195210 + 14737315 14737366 MER5A1 166 + 29 80 202901 51 chain 2839 chr17 81195210 + 14737670 14737748 LTR12D 1347 + 587 624 228089 22 41 0 15 chain 3926 chr17 81195210 + 14738998 14739044 LTR32 486 - 402 448 208472 46 chain 6863 chr17 81195210 + 14743819 14743903 MLT1A0 366 + 280 363 178476 54 1 0 29 chain 28975 chr17 81195210 + 14747545 14747853 AluYa5 310 - 2 310 89114 308 chain 92353 chr17 81195210 + 14760522 14761635 L1PA7 6471 - 17 1137 38832 87 0 2 154 2 1 493 1 4 97 0 2 208 6 7 65 chain 102829 chr17 81195210 + 14761635 14762868 L1PA7 6471 + 4073 5322 36045 25 0 1 212 1 3 105 0 2 60 0 4 240 0 1 137 0 3 220 1 4 232 chain 5502 chr17 81195210 + 14810928 14811005 L1PA8A 6298 + 6023 6095 190027 50 5 0 22 chain 2658 chr17 81195210 + 14823117 14823156 MIR 256 + 149 186 230914 16 2 0 21 chain 3351 chr17 81195210 + 14866167 14866207 MER90a 614 + 574 614 218039 40 chain 31956 chr17 81195210 + 14868136 14868496 L1PA5 6144 - 0 361 80927 338 0 1 22 chain 229297 chr17 81195210 + 14870538 14874032 L1PB1 5432 - 8 3083 17340 4 1 0 16 1 0 12 4 3 19 1 0 24 2 0 14 13 10 14 17 8 4 1 0 15 1 0 43 1 0 19 2 1 51 2 0 9 18 13 7 1 0 24 128 20 284 1 9 10 2 0 103 2 1 8 2 1 65 0 4 63 1 0 48 12 15 257 0 1 13 0 1 395 300 0 84 3 5 47 10 13 46 7 9 7 0 5 129 0 1 339 4 0 296 2 0 486 chain 45393 chr17 81195210 + 14874032 14874611 L1PB1 5432 + 1785 2363 62244 426 13 12 140 chain 9229 chr17 81195210 + 14888226 14888345 Tigger2a 444 + 4 126 164402 100 1 4 18 chain 13274 chr17 81195210 + 14924493 14924676 LTR39 781 - 558 739 147197 67 8 7 15 1 0 92 chain 26909 chr17 81195210 + 14955763 14956065 L1PA5 6144 + 5836 6137 96599 4 1 0 297 chain 34042 chr17 81195210 + 14960486 14961318 L1PA8 5853 + 5345 5853 77561 5 0 1 159 336 15 39 1 0 46 2 0 13 0 3 56 8 6 52 2 1 16 4 3 93 chain 29514 chr17 81195210 + 14962960 14963273 AluYb8 318 + 0 313 86588 313 chain 25715 chr17 81195210 + 14964243 14964542 AluYk4 311 + 1 299 101235 131 1 0 167 chain 10500 chr17 81195210 + 14997644 14997765 MER30 238 - 0 121 158251 121 chain 5903 chr17 81195210 + 15013573 15013664 MER53 195 - 28 120 186158 59 0 2 9 8 7 15 chain 4475 chr17 81195210 + 15019197 15019254 MLT1C 463 - 339 398 201062 21 0 2 36 chain 193395 chr17 81195210 + 15051162 15053866 MER57-int 2662 + 44 2662 19744 26 47 29 9 1 0 132 0 4 69 2 0 112 1 5 389 9 7 7 0 1 211 4 0 51 2 0 308 1 0 35 3 0 5 2 0 30 0 2 138 0 1 183 0 2 41 17 0 15 0 2 47 8 4 65 8 12 98 0 1 225 7 24 85 18 15 27 0 2 41 73 21 18 1 0 15 4 1 24 1 0 9 5 0 33 3 0 31 2 0 6 chain 282146 chr17 81195210 + 15102564 15108884 L1PA10 4194 + 175 4150 14528 11 2 0 14 3 0 7 2 0 8 12 8 9 2 0 9 15 13 15 5 3 14 1 0 8 133 102 88 1 0 4 3 2 121 3 4 141 9 11 47 4 5 64 2 0 74 1 0 142 0 1 259 0 1 400 1 0 64 2 0 30 7 0 5 0 2 276 21 22 199 0 1 50 0 16 63 2326 13 109 14 14 39 1 0 13 3 7 56 1 0 97 6 7 478 7 8 190 0 5 593 3 0 33 chain 66490 chr17 81195210 + 15106256 15107034 L1PA6 6164 - 2 781 49876 140 18 19 620 chain 225260 chr17 81195210 + 15125051 15127878 L1PA7 6471 - 7 6471 17574 5 2 0 237 24 10 201 0 12 299 0 2 82 1 0 535 0 2 236 0 3629 331 7 1 57 6 20 394 4 5 406 chain 6268 chr17 81195210 + 15141098 15141190 U13_ 108 - 0 95 183014 23 6 7 54 0 2 9 chain 25391 chr17 81195210 + 15149042 15149362 AluY 311 + 0 308 102733 39 0 1 86 6 0 115 8 0 34 0 1 32 chain 24745 chr17 81195210 + 15178082 15178450 THE1B 368 - 0 368 106197 38 1 2 136 2 0 21 1 0 18 11 10 101 1 6 23 2 0 13 chain 37971 chr17 81195210 + 15178781 15179210 L1PA5 6144 - 14 443 72170 429 chain 3362 chr17 81195210 + 15183882 15183955 MER33 330 - 209 281 217835 18 22 21 33 chain 29400 chr17 81195210 + 15202618 15202931 AluYb8 318 + 0 312 87077 123 1 0 189 chain 8195 chr17 81195210 + 15214662 15214770 U6 107 + 1 107 169975 101 2 0 5 chain 493860 chr17 81195210 + 15258531 15264120 L1PA5 6144 + 3 6131 7182 86 0 525 197 0 17 192 0 1 180 1 2 1095 0 1 865 2 1 430 1 0 234 0 1 434 4 0 1621 1 0 246 chain 25494 chr17 81195210 + 15282710 15283016 AluY 311 + 0 300 102249 126 6 0 174 chain 8684 chr17 81195210 + 15303778 15303933 HSMAR2 1300 - 1 155 167280 13 11 10 22 15 15 94 chain 6457 chr17 81195210 + 15311033 15311114 L1MB3 1562 + 1195 1276 181579 81 chain 25120 chr17 81195210 + 15320326 15320613 AluYk4 311 + 8 294 104174 124 1 0 162 chain 22177 chr17 81195210 + 15324065 15324333 L1PA8 5853 - 173 437 119460 72 2 0 44 1 0 49 1 0 99 chain 9650 chr17 81195210 + 15324333 15324469 L1PA8 5853 + 5722 5853 162346 18 2 1 55 4 0 57 chain 24762 chr17 81195210 + 15342970 15343254 L1PA5 6144 + 5698 5981 106101 203 2 1 79 chain 13636 chr17 81195210 + 15343258 15343410 L1PA5 6144 + 5986 6138 145836 152 chain 28990 chr17 81195210 + 15381292 15381598 AluYb8 318 + 0 306 89038 306 chain 24061 chr17 81195210 + 15397407 15397690 AluY 311 + 14 311 109974 113 0 14 170 chain 2874 chr17 81195210 + 15401666 15401696 MLT1J2 417 - 331 361 227470 30 chain 112887 chr17 81195210 + 15408829 15410161 LTR12C 1709 + 0 1695 33408 36 0 1 257 1 2 13 0 8 497 0 200 57 0 47 106 0 4 168 0 102 197 chain 11883 chr17 81195210 + 15446094 15446233 MER85 139 - 0 139 152682 139 chain 14417 chr17 81195210 + 15454890 15455100 MER30 238 + 8 235 143161 99 8 20 24 1 7 37 1 0 40 chain 8595 chr17 81195210 + 15457928 15458152 L1MB8 1703 - 41 204 167756 28 108 47 88 chain 13000 chr17 81195210 + 15472447 15472724 L1P5 443 - 122 401 148250 5 1 0 108 99 102 64 chain 3452 chr17 81195210 + 15485083 15485127 MER5A 189 - 127 177 216170 27 0 6 17 chain 4395 chr17 81195210 + 15488296 15488483 Charlie26a 274 - 4 189 202009 35 0 1 20 109 107 17 1 0 5 chain 3691 chr17 81195210 + 15501173 15501223 MIR 256 - 104 153 212059 13 1 0 36 chain 28393 chr17 81195210 + 15505938 15506239 AluYf4 310 - 8 309 91607 301 chain 39064 chr17 81195210 + 15513494 15514024 LTR19B 566 - 0 548 70649 52 0 3 11 16 25 14 12 11 153 1 2 7 0 1 196 0 5 68 chain 23610 chr17 81195210 + 15519848 15520148 AluY 311 + 12 305 112519 114 1 0 24 9 6 69 3 0 80 chain 91814 chr17 81195210 + 15540346 15541582 SVA_F 1814 + 797 1814 39023 83 4 0 18 176 0 49 2 16 250 52 0 591 1 0 10 chain 4986 chr17 81195210 + 15540451 15540504 SVA_F 1814 + 1089 1142 150204 53 chain 10980 chr17 81195210 + 15540504 15540627 SVA_F 1814 + 966 1089 88089 123 chain 1470 chr17 81195210 + 15540928 15540980 SVA_F 1814 + 874 924 155323 14 1 0 10 1 0 26 chain 34892 chr17 81195210 + 15557749 15558227 LTR15 485 + 0 478 76354 39 8 9 101 0 2 86 1 0 39 0 4 105 0 1 10 2 1 43 7 0 12 6 7 19 chain 5588 chr17 81195210 + 15595494 15595820 L1MDb 1215 + 841 1126 189186 22 133 117 41 37 35 20 50 27 23 chain 10853 chr17 81195210 + 15622738 15622988 MLT1A0 366 - 48 300 156770 64 106 108 80 chain 24771 chr17 81195210 + 15626196 15626487 AluY 311 + 14 305 106052 78 0 1 32 1 0 180 chain 20495 chr17 81195210 + 15646994 15647261 AluY 311 + 4 272 125645 44 8 9 69 0 1 40 1 0 105 chain 40811 chr17 81195210 + 15650112 15650737 LTR14B 630 - 0 621 68160 27 13 7 40 10 20 101 8 0 10 42 12 14 0 9 18 0 21 342 chain 42356 chr17 81195210 + 15665625 15666254 THE1D-int 1627 + 982 1619 66210 150 10 11 11 66 67 26 0 7 101 5 4 260 chain 12254 chr17 81195210 + 15680833 15681063 Tigger3b 1229 - 77 298 151192 6 0 1 6 1 0 17 31 0 8 17 32 135 0 7 9 chain 24073 chr17 81195210 + 15681436 15681732 THE1B-int 1605 - 13 310 109917 214 0 1 82 chain 284150 chr17 81195210 + 15698637 15701843 L1PA5 6144 - 7 3220 14408 98 0 3 41 0 1 188 0 1 511 1 0 394 0 1 98 0 1 178 1 0 334 6 8 1356 chain 25672 chr17 81195210 + 15702993 15703294 AluYk4 311 + 0 302 101400 139 5 6 157 chain 34232 chr17 81195210 + 15706624 15707024 L1PA7 6471 + 6068 6470 77307 238 3 7 146 2 0 11 chain 21694 chr17 81195210 + 15714105 15714389 AluSp 311 - 18 301 121411 151 11 10 122 chain 6638 chr17 81195210 + 15717578 15717703 L1PB1 5432 + 5308 5422 180177 17 29 21 24 1 0 22 1 0 12 1 0 18 chain 26023 chr17 81195210 + 15723376 15723687 AluSp 311 - 6 311 99930 11 4 0 5 2 0 289 chain 40265 chr17 81195210 + 15741570 15742078 MER9a3 513 + 0 513 68920 13 0 1 25 1 0 4 0 1 66 0 1 108 0 3 7 3 0 29 1 0 148 0 1 33 5 7 46 0 1 19 chain 29026 chr17 81195210 + 15743387 15743690 AluYa5 310 - 7 310 88875 303 chain 31890 chr17 81195210 + 15763196 15763617 LTR2 463 + 0 447 81023 96 0 4 36 1 0 26 7 27 16 3 5 152 12 13 72 chain 5394 chr17 81195210 + 15769156 15769249 LTR9B 643 - 82 175 191042 35 7 0 11 7 14 33 chain 139490 chr17 81195210 + 15770109 15771695 SVA_D 2077 + 45 2072 26224 510 0 40 92 0 40 176 0 85 35 0 1 4 1 0 6 2 4 22 0 127 121 0 147 617 chain 62226 chr17 81195210 + 15775587 15776523 L1PB3 3668 - 1153 2115 51785 13 0 11 30 0 10 136 0 3 6 24 21 46 0 8 42 0 4 68 0 1 5 12 0 37 0 1 234 10 12 112 9 6 13 10 11 11 9 10 96 0 2 13 chain 58342 chr17 81195210 + 15776539 15777527 L1PB3 3668 + 2677 3563 53781 7 1 0 69 5 7 109 4 5 68 7 8 38 2 0 17 4 1 79 2 1 197 8 7 93 6 9 17 0 1 71 122 22 25 3 1 34 chain 4427 chr17 81195210 + 15787566 15787621 MER3 215 + 0 55 201615 55 chain 11708 chr17 81195210 + 15788403 15788605 L1PA11 4918 - 414 611 153430 16 1 0 16 2 0 41 1 4 20 2 0 7 13 12 12 2 1 48 1 0 20 chain 22994 chr17 81195210 + 15803446 15803752 L1PA16 3655 - 278 581 115650 87 3 1 88 1 0 127 chain 8350 chr17 81195210 + 15813938 15814052 MER30 238 + 128 236 169120 7 9 0 61 0 3 37 chain 30024 chr17 81195210 + 15819644 15820107 LTR2 463 - 0 463 84730 66 56 57 36 1 0 40 2 0 19 11 5 9 0 5 162 1 4 60 chain 20759 chr17 81195210 + 15827799 15828065 AluY 311 + 36 294 124755 91 8 0 167 chain 20418 chr17 81195210 + 15829032 15829293 AluSg7 307 + 31 290 125845 94 1 0 7 1 0 158 chain 4809 chr17 81195210 + 15858410 15858508 MER8 282 + 0 142 197241 33 29 73 36 chain 2933 chr17 81195210 + 15871450 15871483 MER21A 919 - 861 894 226479 33 chain 23848 chr17 81195210 + 15880736 15881033 AluY 311 + 5 298 111191 113 5 0 13 1 2 165 chain 85897 chr17 81195210 + 15882319 15883305 SVA_D 2077 - 16 1326 41196 624 0 49 41 1 0 153 0 1 5 9 53 4 0 1 58 0 68 43 0 162 48 chain 3659 chr17 81195210 + 15883305 15883347 SVA_D 2077 - 585 627 162674 42 chain 8729 chr17 81195210 + 15883364 15883453 SVA_F 1814 - 698 787 167037 89 chain 6705 chr17 81195210 + 15889710 15889792 L1MA8 2339 + 2010 2091 179645 69 1 0 12 chain 28185 chr17 81195210 + 15926735 15927126 MER75 514 + 111 509 92357 25 0 2 282 0 4 39 19 17 15 0 3 11 chain 26282 chr17 81195210 + 15933316 15933688 Tigger2a 444 - 49 444 98896 21 0 1 64 0 4 21 0 5 57 2 1 6 0 3 98 5 14 16 5 7 77 chain 116511 chr17 81195210 + 15954677 15957216 L1PA13 3608 + 1574 3548 32278 37 6 16 26 7 10 135 0 17 52 705 65 25 1 5 12 1 0 8 0 12 36 0 2 263 0 1 36 5 9 80 1 0 143 12 67 98 2 0 15 0 1 200 9 12 48 1 0 29 0 3 9 1 0 28 39 39 15 1 0 32 1 0 50 21 19 44 2 0 61 1 0 57 1 0 5 2 0 38 10 8 6 2 0 18 1 0 22 25 16 14 1 0 6 7 1 10 4 1 12 chain 21952 chr17 81195210 + 15954947 15955231 AluSp 311 + 4 288 120413 121 2 0 16 0 1 63 1 2 81 chain 13623 chr17 81195210 + 15980973 15981163 HSMAR1 1287 + 1089 1287 145889 118 0 4 46 11 15 15 chain 151197 chr17 81195210 + 15997868 15999634 SVA_D 2077 + 10 2077 24451 5 0 1 9 29 0 10 0 42 684 0 40 107 1 0 8 1 38 32 0 1 47 2 4 182 5 193 147 1 0 347 0 1 13 0 20 136 chain 7450 chr17 81195210 + 16000704 16000843 MER21C 908 + 282 403 174445 12 14 0 14 1 0 21 16 13 61 chain 23282 chr17 81195210 + 16013050 16013337 AluSg7 307 - 11 299 114289 168 4 5 115 chain 3338 chr17 81195210 + 16025163 16025276 MIR 256 + 24 136 218257 26 61 60 26 chain 4365 chr17 81195210 + 16048135 16048187 SVA_A 1864 + 19 71 202393 52 chain 112158 chr17 81195210 + 16048193 16049620 SVA_B 1603 + 8 1597 33624 5 2 0 23 56 41 61 0 10 371 0 40 257 0 51 91 11 13 15 0 77 81 4 3 450 chain 62471 chr17 81195210 + 16055472 16056190 L1PA6 6164 - 3 720 51688 7 2 0 137 2 3 570 chain 25379 chr17 81195210 + 16144140 16144453 AluSp 311 + 0 307 102786 52 7 1 254 chain 23550 chr17 81195210 + 16149551 16149835 AluSc 308 + 0 290 112848 47 4 10 233 chain 29031 chr17 81195210 + 16149986 16150302 AluYb8 318 - 6 318 88851 186 2 0 8 2 0 118 chain 25385 chr17 81195210 + 16155380 16155685 AluSc 308 - 3 308 102757 305 chain 17844 chr17 81195210 + 16170328 16170749 Tigger2 2703 - 0 431 133261 17 112 116 21 7 12 42 0 1 82 1 4 21 1 28 27 31 1 59 chain 3376 chr17 81195210 + 16170768 16170815 MER8 282 - 233 282 217545 26 1 3 20 chain 164254 chr17 81195210 + 16178897 16182108 MER41-int 2638 - 4 2270 22775 98 0 4 54 312 0 25 0 8 325 6 8 17 1 0 18 320 0 44 2 0 10 0 2 36 0 2 107 2 0 64 2 0 144 1 0 76 1 0 7 0 2 36 0 2 218 1 0 12 2 0 82 0 2 102 1 0 17 0 1 4 1 0 41 13 1 10 10 22 27 1 0 182 373 44 51 0 2 221 0 1 46 1 0 6 5 0 59 0 9 17 chain 129795 chr17 81195210 + 16214781 16216267 SVA_C 1631 - 9 1631 28134 604 1 0 16 1 0 46 8 1 10 0 88 13 0 40 118 1 0 632 0 1 10 9 26 17 chain 31400 chr17 81195210 + 16272289 16273082 MLT2A1 477 + 0 469 81817 142 0 1 25 1 5 37 5 0 7 307 5 161 1 0 3 15 0 10 38 33 30 1 0 10 chain 6394 chr17 81195210 + 16279143 16279701 L1MB2 1706 + 1411 1643 182071 63 452 127 9 2 1 32 chain 19317 chr17 81195210 + 16286288 16286533 AluSc 308 + 38 284 129189 84 3 4 158 chain 12839 chr17 81195210 + 16301142 16301415 MER4B 649 + 362 624 148889 35 2 1 19 63 54 5 1 0 38 10 11 39 1 0 60 chain 75159 chr17 81195210 + 16303508 16304440 LTR5A 1029 + 93 1027 45944 57 1 0 411 1 0 165 0 1 4 1 0 40 6 5 11 0 3 29 1 2 163 11 12 31 chain 43741 chr17 81195210 + 16308214 16308711 LTR2C 499 - 0 499 64515 63 0 1 61 0 1 373 chain 3406 chr17 81195210 + 16314143 16314197 U2 167 + 15 60 216973 38 9 0 7 chain 25281 chr17 81195210 + 16316750 16317057 AluSp 311 + 5 307 103311 295 5 0 7 chain 3798 chr17 81195210 + 16330479 16330520 MIR 256 - 141 182 210413 41 chain 13577 chr17 81195210 + 16341016 16341170 L1PA5 6144 + 5990 6144 146067 154 chain 24209 chr17 81195210 + 16341187 16341465 AluSp 311 + 19 294 109158 270 3 0 5 chain 23418 chr17 81195210 + 16361782 16362046 AluSp 311 - 15 279 113550 264 chain 3968 chr17 81195210 + 16362204 16362249 MLT1F1 559 + 488 533 207877 45 chain 5353 chr17 81195210 + 16380502 16380611 MLT2D 439 - 329 439 191504 56 29 30 24 chain 31070 chr17 81195210 + 16405009 16405471 MER31A 484 + 0 457 82396 129 0 16 51 10 9 166 5 6 29 23 2 49 chain 23373 chr17 81195210 + 16407740 16408032 AluSc 308 - 17 308 113794 33 2 1 257 chain 14269 chr17 81195210 + 16435817 16435997 MER107 203 - 0 179 143654 34 2 0 3 2 0 83 0 3 56 chain 17222 chr17 81195210 + 16439836 16440039 AluSx4 309 + 88 290 134996 192 1 0 10 chain 6774 chr17 81195210 + 16442862 16443059 LTR9B 643 + 460 643 179150 12 13 11 17 8 1 11 3 0 5 9 9 41 38 36 40 chain 145697 chr17 81195210 + 16446496 16448891 HUERS-P3b-int 2065 + 13 2044 25223 81 3 0 18 313 0 205 0 1 260 3 0 18 0 6 82 14 10 79 2 1 54 1 0 76 5 8 111 0 4 14 2 1 61 0 1 21 1 0 9 1 8 78 0 1 195 0 2 53 1 0 44 29 2 64 23 1 19 2 0 13 1 0 24 1 0 90 3 1 56 25 16 14 8 7 62 4 0 56 2 1 29 0 2 59 0 7 6 chain 5443 chr17 81195210 + 16488117 16488182 FLAM_C 140 + 53 118 190583 65 chain 23010 chr17 81195210 + 16506058 16506433 L1PB3 3668 + 3145 3503 115574 43 18 19 82 2 1 95 7 6 81 29 13 18 chain 8616 chr17 81195210 + 16518217 16518354 L1MB3 1562 + 1291 1425 167650 60 1 0 24 10 9 37 1 0 4 chain 6918 chr17 81195210 + 16540185 16540259 L1P1 4361 - 251 325 178046 74 chain 4365 chr17 81195210 + 16540259 16540309 L1P1 4361 + 3818 3868 197343 50 chain 165694 chr17 81195210 + 16540309 16542180 L1PA4 6152 + 4111 6151 22553 51 0 152 176 0 5 809 0 4 414 0 2 255 1 0 17 1 8 147 chain 28961 chr17 81195210 + 16560107 16560425 AluYb8 318 + 1 314 89174 125 5 0 188 chain 23290 chr17 81195210 + 16627569 16627844 AluY 311 + 0 303 114255 132 0 1 18 0 27 125 chain 10979 chr17 81195210 + 16628836 16629091 L1PB1 5432 + 5202 5430 156275 4 0 1 5 1 0 7 1 0 17 1 0 45 1 0 15 3 0 6 16 6 17 10 7 14 2 0 24 1 0 22 1 0 11 2 1 10 1 0 8 1 0 4 1 0 4 chain 21994 chr17 81195210 + 16636572 16636844 AluY 311 + 39 309 120256 94 1 0 74 1 0 102 chain 29157 chr17 81195210 + 16640476 16640779 AluYa5 310 - 7 310 88274 303 chain 47775 chr17 81195210 + 16671186 16671837 PABL_A 660 - 0 660 60637 69 0 4 18 1 0 14 11 5 113 0 12 13 12 9 111 0 1 78 9 9 95 0 2 107 chain 254578 chr17 81195210 + 16678541 16686707 L1PA11 4918 - 290 4790 16006 17 2 0 5 2 0 6 134 112 13 2 0 59 2 5 17 2 1 62 5 0 125 2 1 436 0 1 221 0 3 247 0 1 204 0 1 16 4476 835 7 0 3 22 1 0 22 0 4 368 4 1 604 19 25 558 8 2 10 19 15 191 1 6 178 26 23 14 0 1 6 1 0 52 chain 113949 chr17 81195210 + 16682854 16684563 L1PB1 5432 + 3734 5416 33105 451 4 21 131 0 6 85 1 0 7 0 1 16 1 0 172 1 5 381 36 37 56 19 11 24 46 21 9 2 0 52 2 1 10 3 6 44 1 0 15 2 0 6 21 11 13 9 6 14 2 0 27 1 0 19 5 4 8 1 0 12 chain 36768 chr17 81195210 + 16731345 16731788 L1PA6 6164 + 5723 6162 73849 292 9 5 142 chain 74832 chr17 81195210 + 16738193 16739171 LTR5_Hs 974 - 0 974 46096 191 22 13 52 5 7 51 0 1 197 0 4 118 0 12 28 4 0 165 0 1 103 17 6 25 chain 16682 chr17 81195210 + 16756100 16756332 LTR14A 344 - 143 344 136459 90 31 0 111 chain 23760 chr17 81195210 + 16756828 16757113 AluY 311 + 10 295 111707 285 chain 16013 chr17 81195210 + 16758301 16758485 AluSx1 309 + 52 236 138322 184 chain 5854 chr17 81195210 + 16793254 16793330 L1PB1 5432 + 5349 5422 186648 21 1 0 22 1 0 12 1 0 18 chain 145035 chr17 81195210 + 16804813 16806611 L1PA8A 6298 + 4270 6061 25319 470 24 14 65 1 0 666 1 0 4 8 13 559 chain 30129 chr17 81195210 + 16824897 16825273 MER41A 554 + 0 379 84391 149 0 1 15 1 0 103 0 2 72 0 1 36 chain 14359 chr17 81195210 + 16825358 16825549 MER4E1 777 + 577 769 143345 88 1 2 102 chain 67168 chr17 81195210 + 16850516 16851435 L1PA16 3655 + 2593 3526 49582 52 0 1 29 1 0 115 0 3 108 1 0 21 1 0 60 0 2 158 0 1 61 1 0 81 7 5 65 0 4 56 13 17 61 0 5 28 chain 24986 chr17 81195210 + 16887607 16887913 AluSp 311 + 4 311 104879 106 1 2 199 chain 3234 chr17 81195210 + 16891425 16891460 tRNA-Cys-TGY 72 - 37 72 220364 35 chain 2800 chr17 81195210 + 16950526 16950589 MER58A 224 - 160 221 228730 23 22 20 18 chain 3667 chr17 81195210 + 17051591 17051635 Charlie1b 519 + 12 56 212448 44 chain 23472 chr17 81195210 + 17060880 17061161 AluSp 311 + 14 301 113259 33 1 7 247 chain 9886 chr17 81195210 + 17081757 17081947 7SLRNA 320 + 40 226 161151 40 30 25 80 21 22 19 chain 23942 chr17 81195210 + 17155117 17155393 AluY 311 + 0 293 110665 52 0 16 64 0 1 160 chain 27212 chr17 81195210 + 17188413 17188723 AluYk4 311 - 1 311 95555 310 chain 21973 chr17 81195210 + 17192143 17192395 AluSp 311 - 46 298 120341 252 chain 4059 chr17 81195210 + 17203350 17203442 L1MD 993 + 336 438 206489 27 29 39 36 chain 24509 chr17 81195210 + 17203784 17204065 AluSp 311 - 20 302 107498 254 0 1 27 chain 3134 chr17 81195210 + 17204865 17204899 MER52D 1964 + 1117 1151 222295 34 chain 23963 chr17 81195210 + 17210239 17210515 AluSp 311 + 10 285 110550 122 1 0 153 chain 168482 chr17 81195210 + 17239245 17243828 L1MA3 4352 - 164 3136 22223 8 1 0 57 369 35 25 6 10 59 6 9 72 289 0 141 13 13 22 2 0 31 61 112 77 0 1 59 464 7 86 0 1 245 1 51 62 4 5 98 837 202 101 4 0 19 0 3 55 1 4 63 0 1 14 34 40 26 1 5 56 1 0 33 2 0 164 8 4 290 4 3 40 1 0 4 12 8 107 1 4 5 1 0 75 8 7 20 1 3 17 1 0 204 0 1 31 46 39 38 chain 18750 chr17 81195210 + 17274609 17274961 MER41A 554 + 0 233 130826 105 119 0 128 chain 10238 chr17 81195210 + 17275312 17275439 MER4A 717 + 0 128 159433 25 1 0 4 0 1 59 0 1 38 chain 21335 chr17 81195210 + 17281843 17282134 AluSc8 310 + 0 301 122736 58 1 4 69 19 26 144 chain 23695 chr17 81195210 + 17293967 17294254 AluSp 311 - 22 311 112058 224 0 2 63 chain 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19 chain 4553 chr17 81195210 + 17346387 17346438 SVA_F 1814 - 668 718 118840 18 1 0 32 chain 5178 chr17 81195210 + 17346510 17346568 SVA_F 1814 - 790 848 118840 58 chain 3037 chr17 81195210 + 17346568 17346600 SVA_F 1814 - 672 704 189995 32 chain 2024 chr17 81195210 + 17346600 17346622 SVA_F 1814 - 895 917 198614 22 chain 3021 chr17 81195210 + 17350782 17350854 MER5A1 166 + 40 113 224596 32 27 28 13 chain 6472 chr17 81195210 + 17363769 17363846 HY3 101 + 22 99 181452 77 chain 19366 chr17 81195210 + 17371489 17371834 MLT1A0 366 - 0 341 129034 115 66 63 21 11 12 122 2 0 8 chain 132009 chr17 81195210 + 17389484 17391030 LTR12C 1709 + 0 1709 27635 562 17 18 126 0 159 246 1 0 113 0 4 481 chain 23230 chr17 81195210 + 17403994 17404283 AluSc 308 - 2 288 114541 28 3 0 146 2 1 32 0 1 78 chain 24960 chr17 81195210 + 17430364 17430648 AluSp 311 - 25 309 105005 284 chain 24304 chr17 81195210 + 17451867 17452145 AluSp 311 - 17 298 108636 200 0 3 78 chain 8311 chr17 81195210 + 17481944 17482053 U6 107 + 0 107 169326 79 3 1 27 chain 15602 chr17 81195210 + 17482053 17482247 L1PA7 6471 + 6270 6467 139576 25 0 2 115 0 1 54 chain 22557 chr17 81195210 + 17504269 17504546 AluSp 311 + 0 294 117776 64 0 1 93 0 16 120 chain 72301 chr17 81195210 + 17514241 17515198 LTR5_Hs 974 - 0 974 47331 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 46 0 4 127 0 1 122 1 0 39 10 18 110 chain 23806 chr17 81195210 + 17519270 17519563 AluSp 311 - 11 302 111439 168 2 0 123 chain 17832 chr17 81195210 + 17519573 17519813 L1PB3 3668 - 362 602 133298 16 5 4 97 0 1 122 chain 7650 chr17 81195210 + 17521275 17521367 FLAM_C 140 + 10 111 173233 34 0 9 58 chain 15223 chr17 81195210 + 17535474 17536491 LTR12D 1347 - 240 760 140708 25 1 0 4 136 3 26 16 17 10 35 31 35 10 9 19 365 154 53 16 33 14 165 0 87 chain 3830 chr17 81195210 + 17536245 17536289 LTR12D 1347 - 695 739 209946 44 chain 19812 chr17 81195210 + 17538891 17539141 AluY 311 + 39 300 127775 93 0 1 44 6 0 47 0 16 60 chain 3451 chr17 81195210 + 17546587 17546630 MLT1B 390 + 21 64 216195 43 chain 23134 chr17 81195210 + 17549687 17550004 AluSx 319 + 0 312 114975 120 8 0 75 0 1 10 4 8 35 2 0 63 chain 4149 chr17 81195210 + 17560364 17560415 MSTB 430 - 373 424 205248 51 chain 25459 chr17 81195210 + 17647820 17648127 AluSg 306 + 0 304 102416 11 4 0 102 0 1 190 chain 26391 chr17 81195210 + 17657506 17657849 AluSp 311 - 0 311 98444 115 35 3 193 chain 25127 chr17 81195210 + 17683085 17683377 AluYf5 307 - 6 296 104145 21 3 1 268 chain 4264 chr17 81195210 + 17793657 17793711 MADE2 80 + 11 65 203700 54 chain 140903 chr17 81195210 + 17814973 17816540 SVA_D 2077 - 4 2076 26008 660 0 226 22 0 269 687 1 0 178 1 12 18 chain 2962 chr17 81195210 + 17821490 17821530 L1M3 994 - 894 933 225840 25 1 0 14 chain 8224 chr17 81195210 + 17827478 17827709 L1MB8 1703 + 1512 1661 169815 76 59 16 24 47 8 25 chain 14607 chr17 81195210 + 17859533 17859717 LTR12C 1709 - 501 932 142560 77 0 47 51 0 200 56 chain 24415 chr17 81195210 + 17883908 17884198 AluSc 308 - 10 300 107998 290 chain 21496 chr17 81195210 + 17899629 17899937 THE1B 368 - 60 368 122160 15 7 6 73 23 24 19 1 0 140 0 1 30 chain 86744 chr17 81195210 + 17915464 17917138 L1MA5A 2387 + 1036 2375 40866 4 1 0 233 311 0 31 3 5 80 5 10 37 0 4 116 1 0 18 1 10 51 1 0 149 9 11 53 0 1 91 0 2 30 1 2 59 3 2 35 2 0 9 0 8 21 1 0 48 2 0 53 51 21 23 2 0 43 34 21 15 1 0 8 1 0 22 2 0 13 chain 3532 chr17 81195210 + 17930027 17930071 MIR 256 - 73 117 214836 44 chain 25353 chr17 81195210 + 17967064 17967356 AluSq10 312 - 20 312 102938 292 chain 983 chr17 81195210 + 17990112 17990179 MER30 238 + 31 98 151689 67 chain 24291 chr17 81195210 + 17990520 17990809 AluSp 311 - 23 311 108701 53 2 0 121 3 4 110 chain 1570 chr17 81195210 + 17990832 17990939 MER30 238 + 98 236 151689 11 1 29 58 0 3 37 chain 3280 chr17 81195210 + 18072965 18073001 Charlie1b 519 - 56 92 219370 36 chain 24922 chr17 81195210 + 18092409 18092722 AluY 311 + 0 301 105207 129 4 0 126 8 0 46 chain 30469 chr17 81195210 + 18126352 18126723 MER41A 554 - 168 541 83489 41 0 5 217 3 0 110 chain 21378 chr17 81195210 + 18142038 18142300 AluSx1 309 + 0 258 122592 26 5 1 231 chain 139832 chr17 81195210 + 18200735 18202382 SVA_D 2077 + 4 2077 26166 54 0 2 44 0 27 593 0 3 31 9 6 126 0 396 26 11 12 64 0 1 4 15 14 670 chain 131030 chr17 81195210 + 18240857 18242380 SVA_C 1631 + 0 1631 27852 24 0 1 27 0 4 666 0 40 115 0 46 22 0 46 46 1 0 9 37 0 238 0 13 317 4 0 17 chain 3298 chr17 81195210 + 18241767 18241804 SVA_C 1631 + 710 747 214221 37 chain 4414 chr17 81195210 + 18283209 18283261 MIR 256 - 131 183 201742 52 chain 21222 chr17 81195210 + 18287011 18287269 AluSz 310 + 7 265 123129 258 chain 10600 chr17 81195210 + 18305838 18306694 MER30 238 - 0 237 157826 45 0 3 36 13 12 15 4 0 7 650 15 58 11 29 17 chain 22927 chr17 81195210 + 18311043 18311320 AluYc 301 + 11 291 115980 20 0 1 88 0 2 169 chain 16804 chr17 81195210 + 18323039 18323271 LTR14A 344 + 0 201 136106 111 31 0 90 chain 72984 chr17 81195210 + 18340207 18341172 LTR5_Hs 974 + 14 974 47033 11 17 6 103 0 1 161 4 0 36 0 12 43 1 0 72 0 4 196 0 1 51 5 7 52 22 13 191 chain 37290 chr17 81195210 + 18347574 18348016 L1PA6 6164 - 2 441 73095 13 4 1 425 chain 244472 chr17 81195210 + 18435615 18443706 L1PA11 4918 + 128 4578 16533 52 1 0 6 0 1 14 26 23 64 56 68 46 1 6 191 19 15 10 8 2 558 19 25 130 0 7 6 17 10 334 13 13 104 4 1 103 0 1 5 1 0 259 0 4 22 1 0 22 0 3 11 4487 848 204 0 1 247 0 3 658 2 1 125 6 0 62 2 1 17 1 4 60 2 0 42 41 32 5 1 0 13 2 0 11 chain 170613 chr17 81195210 + 18437746 18440224 L1PB1 5432 - 16 2458 21979 12 1 0 8 5 4 23 1 0 23 2 0 14 9 6 29 13 1 15 1 0 44 3 6 10 2 1 52 2 0 9 46 21 24 19 11 84 7 9 397 0 4 157 1 0 16 0 1 7 1 0 85 0 6 131 4 21 453 10 8 86 18 11 90 7 0 6 6 13 313 1 0 231 chain 49577 chr17 81195210 + 18450479 18451139 PABL_A 660 + 0 660 59340 108 0 2 181 0 1 258 0 2 9 17 8 18 0 4 17 16 16 36 chain 11143 chr17 81195210 + 18562860 18563114 MLT1A0 366 + 62 318 155657 84 106 108 64 chain 3640 chr17 81195210 + 18592921 18592962 L1MDb 1215 - 194 235 212959 41 chain 7918 chr17 81195210 + 18609370 18609511 MER20 218 + 0 172 171535 56 31 61 48 0 1 6 chain 41640 chr17 81195210 + 18624664 18625256 MER4B 649 - 7 649 67103 5 1 0 4 1 0 70 1 0 35 15 18 32 1 0 113 5 0 18 0 13 135 0 42 40 0 1 116 chain 29335 chr17 81195210 + 18637485 18637791 AluYb8 318 + 0 306 87373 306 chain 39483 chr17 81195210 + 18656354 18656884 LTR19B 566 + 18 566 70044 70 0 5 191 0 1 11 0 1 153 12 11 14 16 25 11 0 3 52 chain 5716 chr17 81195210 + 18663566 18663711 MLT2D 439 - 0 167 187969 15 0 1 30 48 70 24 5 4 23 chain 23646 chr17 81195210 + 18673619 18673914 AluSg7 307 - 12 307 112330 143 0 3 6 4 1 142 chain 32147 chr17 81195210 + 18685845 18686304 MER41A 554 - 55 531 80615 66 1 9 15 8 12 82 12 13 208 3 7 64 chain 8595 chr17 81195210 + 18693193 18693417 L1MB8 1703 + 1499 1662 167755 88 108 47 28 chain 14064 chr17 81195210 + 18696258 18696467 MER30 238 - 4 230 144339 41 1 0 35 1 7 24 8 20 99 chain 11966 chr17 81195210 + 18705108 18705247 MER85 139 + 0 139 152334 139 chain 23587 chr17 81195210 + 18705262 18705540 AluY 311 + 10 288 112643 36 1 0 86 0 1 155 chain 26811 chr17 81195210 + 18774961 18775261 AluSp 311 - 0 300 96937 300 chain 21803 chr17 81195210 + 18779183 18779467 AluSp 311 + 20 294 121005 28 2 1 238 9 0 7 chain 89649 chr17 81195210 + 18791155 18792151 SVA_F 1814 - 0 1013 39766 686 0 1 116 1 0 10 1 0 39 1 15 10 1 0 56 0 1 25 1 0 38 0 3 5 0 2 6 chain 11110 chr17 81195210 + 18806459 18806620 AluSp 311 + 1 277 155772 50 13 129 6 1 0 91 chain 21983 chr17 81195210 + 18829142 18829420 AluY 311 + 0 292 120303 56 3 9 67 0 1 61 0 1 8 0 6 83 chain 29188 chr17 81195210 + 18834939 18835248 AluYa5 310 - 1 310 88109 309 chain 3034 chr17 81195210 + 18839530 18839654 L1MB5 1630 + 870 987 224309 27 15 14 14 52 46 16 chain 4014 chr17 81195210 + 18857037 18857109 Tigger4a 237 + 47 105 207184 11 15 1 46 chain 24067 chr17 81195210 + 18858103 18858426 AluSq4 311 + 0 310 109946 118 18 3 5 0 1 135 0 1 47 chain 24293 chr17 81195210 + 18878728 18879022 AluSp 311 + 8 296 108687 120 5 0 78 1 0 90 chain 12120 chr17 81195210 + 18953466 18953668 MER4B 649 - 344 589 151735 106 27 69 39 2 3 28 chain 23939 chr17 81195210 + 18955982 18956275 AluSg7 307 + 11 297 110696 112 0 1 6 8 0 167 chain 26403 chr17 81195210 + 18986896 18987207 AluSq10 312 + 0 305 98400 147 6 0 158 chain 3179 chr17 81195210 + 19000891 19000935 LTR25 836 + 59 102 221363 9 2 1 33 chain 24728 chr17 81195210 + 19021488 19021772 AluSp 311 - 17 301 106281 284 chain 12120 chr17 81195210 + 19027500 19027702 MER4B 649 + 60 305 151734 28 2 3 39 27 69 106 chain 24572 chr17 81195210 + 19056576 19056858 AluY 311 + 0 287 107123 70 0 3 43 0 1 9 0 1 160 chain 3179 chr17 81195210 + 19057777 19057821 LTR25 836 - 734 777 221364 33 2 1 9 chain 26403 chr17 81195210 + 19071507 19071818 AluSq10 312 - 7 312 98401 158 6 0 147 chain 26684 chr17 81195210 + 19113068 19113373 AluSq10 312 + 0 305 97372 305 chain 26891 chr17 81195210 + 19132212 19132520 AluSg7 307 - 0 307 96662 182 1 0 125 chain 27647 chr17 81195210 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chain 123045 chr17 81195210 + 19378635 19380017 SVA_D 2077 + 4 2066 30028 21 5 0 101 1 0 416 0 40 105 0 157 69 0 488 299 1 2 364 chain 37805 chr17 81195210 + 19385948 19386493 MER4D1 891 + 0 542 72407 108 4 7 52 1 2 44 0 2 15 6 0 220 0 1 6 2 0 6 1 0 28 20 19 32 chain 3965 chr17 81195210 + 19393450 19393500 MSTB1 431 - 15 65 207905 50 chain 6121 chr17 81195210 + 19401474 19401827 MSTD 398 + 0 378 184260 55 175 202 24 55 56 19 8 5 17 chain 75098 chr17 81195210 + 19408270 19409235 LTR5_Hs 974 - 0 974 45969 103 2 0 37 8 15 67 18 19 77 1 0 188 0 1 25 1 4 149 0 1 121 1 0 167 chain 6677 chr17 81195210 + 19411493 19411565 tRNA-Trp-TGG 72 + 0 72 179857 72 chain 20902 chr17 81195210 + 19413059 19413305 AluSp 311 + 56 302 124265 246 chain 7609 chr17 81195210 + 19416032 19416142 MER4D1 891 + 190 307 173486 22 13 20 75 chain 27554 chr17 81195210 + 19421938 19422356 LTR7B 505 - 15 505 94490 36 14 13 76 1 0 54 1 89 27 35 11 69 0 10 105 chain 4799 chr17 81195210 + 19426728 19426884 L1MCa 1829 - 15 162 197366 17 67 59 37 7 6 28 chain 11800 chr17 81195210 + 19454014 19454240 MLT1B 390 - 48 286 153046 62 0 1 38 59 71 39 1 0 27 chain 6164 chr17 81195210 + 19506586 19506658 tRNA-Gln-CAA_ 72 - 0 72 183848 72 chain 10306 chr17 81195210 + 19527226 19527466 L1PB3 3668 - 48 258 159109 7 3 0 14 22 18 12 7 3 37 3 1 25 5 0 7 1 0 7 26 14 36 0 1 28 chain 3912 chr17 81195210 + 19530382 19530432 MER33 330 - 101 156 208664 44 0 5 6 chain 163480 chr17 81195210 + 19530432 19532185 SVA_F 1814 - 0 1804 22880 542 0 37 48 2 0 10 1 0 215 1 15 10 0 1 522 0 2 402 chain 27572 chr17 81195210 + 19543427 19543724 AluYb8 318 + 18 315 94429 105 1 0 106 0 1 85 chain 3253 chr17 81195210 + 19557193 19557237 LTR12C 1709 - 832 916 219953 20 0 40 24 chain 23482 chr17 81195210 + 19584261 19584551 AluY 311 + 17 295 113206 115 0 1 150 13 0 12 chain 79173 chr17 81195210 + 19588171 19589107 SVA_A 1864 + 15 1841 43964 584 0 334 99 0 556 253 chain 77964 chr17 81195210 + 19593034 19594087 L1MA3 4352 + 2525 3556 44538 59 2 0 9 6 10 529 1 0 261 47 22 48 0 2 91 chain 24319 chr17 81195210 + 19594149 19594448 AluSp 311 + 0 294 108550 20 1 0 100 3 0 57 1 0 117 chain 30072 chr17 81195210 + 19626851 19627165 AluYb8 318 - 4 318 84596 314 chain 6002 chr17 81195210 + 19633505 19633608 MLT1A0 366 + 0 101 185227 28 12 11 38 2 1 23 chain 21500 chr17 81195210 + 19647428 19647718 AluSx 319 + 0 285 122148 51 18 12 69 0 1 152 chain 3523 chr17 81195210 + 19661758 19661798 L1MB3 1562 + 1231 1271 215010 40 chain 5417 chr17 81195210 + 19671068 19671194 MER44B 551 + 77 212 190832 57 39 49 5 1 0 24 chain 24613 chr17 81195210 + 19676014 19676313 AluY 311 + 2 305 106916 87 0 4 30 1 0 9 0 1 142 0 2 16 2 0 12 chain 20946 chr17 81195210 + 19698136 19698403 AluY 311 + 29 292 124125 5 2 0 241 8 6 11 chain 8285 chr17 81195210 + 19719069 19719167 L1PA4 6152 + 6043 6143 169485 91 0 2 7 chain 4735 chr17 81195210 + 19731691 19732055 L1M4c 1769 + 1288 1719 198103 21 3 0 33 1 0 4 271 342 31 chain 4788 chr17 81195210 + 19751381 19751437 U6 107 + 0 56 197482 56 chain 22868 chr17 81195210 + 19758141 19758428 AluSg7 307 + 10 296 116243 179 1 0 107 chain 6193 chr17 81195210 + 19764174 19764245 tRNA-Gly-GGG 71 + 0 71 183641 71 chain 14251 chr17 81195210 + 19786672 19786839 AluYk4 311 + 134 302 143716 40 0 1 127 chain 21479 chr17 81195210 + 19791871 19792195 LTR7B 505 - 64 505 122223 74 1 0 4 11 53 20 2 1 37 14 81 56 1 11 104 chain 23337 chr17 81195210 + 19801664 19801948 AluSg7 307 + 20 303 113997 59 0 1 51 0 1 149 3 0 22 chain 22782 chr17 81195210 + 19806533 19806828 AluSz 310 - 16 310 116670 72 2 0 14 1 2 206 chain 22766 chr17 81195210 + 19810327 19810631 AluSp 311 - 9 311 116746 149 1 0 95 18 17 41 chain 33300 chr17 81195210 + 19822241 19822635 L1PA6 6164 - 2 394 78729 5 3 0 346 0 1 40 chain 55581 chr17 81195210 + 19838378 19839221 Tigger3b 1229 - 62 955 55368 119 26 28 28 7 11 169 0 5 41 0 1 16 0 6 20 43 55 19 0 3 22 2 6 37 0 2 6 0 7 36 0 2 149 0 1 64 0 2 17 1 0 21 chain 134613 chr17 81195210 + 19853611 19855219 SVA_B 1603 + 0 1599 27092 7 3 0 15 0 26 21 14 1 772 0 36 16 47 0 27 4 0 12 1 0 25 8 4 529 0 1 107 chain 12499 chr17 81195210 + 19877641 19877821 MER30 238 + 34 237 150247 23 1 2 37 11 33 108 chain 24493 chr17 81195210 + 19879840 19880129 AluSp 311 - 20 311 107578 149 0 1 91 2 3 47 chain 4408 chr17 81195210 + 19901006 19901089 5S 121 + 6 89 201829 18 23 23 42 chain 79898 chr17 81195210 + 19919604 19920871 LTR12C 1709 + 0 1709 43641 29 1 6 6 0 4 119 1 0 122 12 8 44 6 49 73 7 8 5 0 1 31 0 1 159 0 1 49 0 444 49 75 20 60 77 76 255 22 21 29 7 11 29 chain 22900 chr17 81195210 + 19965290 19965585 AluY 311 + 0 301 116106 61 1 9 53 2 0 9 0 1 147 1 0 21 chain 66693 chr17 81195210 + 20003974 20004790 L1PA8 5853 - 0 811 49790 92 2 1 16 1 0 54 13 11 71 2 0 44 1 0 480 0 2 40 chain 10711 chr17 81195210 + 20050241 20050373 L1MC2 1988 - 715 847 157366 132 chain 23127 chr17 81195210 + 20053697 20053964 AluSp 311 + 27 296 115011 236 0 2 31 chain 21216 chr17 81195210 + 20094809 20095074 L1PA7 6471 - 1 262 123154 96 3 0 53 1 0 112 chain 45196 chr17 81195210 + 20096183 20096729 MER41A 554 - 0 554 62829 145 0 4 316 0 4 85 chain 83261 chr17 81195210 + 20096738 20097808 MER41-int 2638 - 2 1086 42225 224 0 5 176 3 5 141 0 3 48 0 3 128 0 1 207 1 0 23 7 8 112 chain 18641 chr17 81195210 + 20166623 20166836 L1PA5 6144 + 5925 6138 131104 213 chain 29720 chr17 81195210 + 20190448 20190766 AluYb8 318 + 0 318 85762 318 chain 14998 chr17 81195210 + 20191670 20191906 L1PA11 4918 + 4297 4517 141324 37 6 0 54 7 6 13 2 0 68 2 0 13 1 0 20 4 0 9 chain 10667 chr17 81195210 + 20191953 20192084 THE1A 353 - 0 131 157538 131 chain 24423 chr17 81195210 + 20192084 20192382 AluSg4 309 - 4 296 107952 26 5 0 70 2 1 195 chain 159116 chr17 81195210 + 20198351 20200185 L1PA5 6144 - 16 1854 23451 322 0 1 1443 8 7 7 0 4 54 chain 27402 chr17 81195210 + 20225230 20225518 AluYd8 298 + 0 288 94962 288 chain 26201 chr17 81195210 + 20227832 20228127 AluYf4 310 - 15 310 99196 295 chain 25396 chr17 81195210 + 20238165 20238467 AluY 311 + 1 300 102700 77 5 0 54 0 1 57 0 1 109 chain 23306 chr17 81195210 + 20258292 20258563 AluY 311 + 0 299 114170 132 0 1 18 0 27 121 chain 20306 chr17 81195210 + 20266963 20267221 AluY 311 + 39 295 126220 94 1 0 74 5 4 84 chain 110233 chr17 81195210 + 20307100 20308676 L1PA11 4918 - 290 1843 34146 17 2 0 5 2 0 6 134 112 13 2 0 67 0 3 11 2 1 62 5 0 125 2 1 658 0 3 247 0 1 65 0 4 135 0 1 16 chain 169838 chr17 81195210 + 20310638 20313122 L1PB1 5432 + 2974 5416 22073 231 1 0 313 6 13 6 7 0 90 18 11 86 16 8 453 4 21 131 0 6 85 1 0 7 0 1 16 1 0 157 0 4 401 0 2 82 24 16 24 46 21 9 2 0 52 2 1 10 3 6 44 2 1 14 13 1 29 9 6 14 2 0 27 1 0 19 5 4 8 1 0 12 chain 38316 chr17 81195210 + 20403010 20403449 L1PA6 6164 + 5723 6162 71690 439 chain 72984 chr17 81195210 + 20409862 20410827 LTR5_Hs 974 - 0 960 47034 191 22 13 52 5 7 51 0 1 197 0 4 71 1 0 47 0 12 28 4 0 165 0 1 103 17 6 11 chain 16935 chr17 81195210 + 20427771 20428003 LTR14A 344 - 143 344 135765 90 31 0 111 chain 22168 chr17 81195210 + 20434169 20434458 AluY 311 + 16 307 119503 76 0 1 30 5 4 134 6 8 38 chain 4591 chr17 81195210 + 20441082 20441137 HY3 101 + 17 73 199730 25 0 1 30 chain 9007 chr17 81195210 + 20445098 20445221 MER30 238 + 116 238 165553 6 4 0 68 0 3 45 chain 91482 chr17 81195210 + 20460263 20461343 SVA_B 1603 + 29 1603 39142 10 12 0 265 0 216 33 0 3 117 0 281 203 0 3 59 0 1 224 0 2 157 chain 11965 chr17 81195210 + 20464389 20464664 L1MB5 1630 + 863 1125 152337 63 73 78 37 30 10 8 0 2 64 chain 13037 chr17 81195210 + 20464711 20464966 L1PB1 5432 + 5195 5424 148093 25 2 1 16 1 0 44 1 0 15 1 0 4 21 8 19 8 5 12 2 0 26 1 0 22 1 0 12 1 0 16 1 0 4 chain 25566 chr17 81195210 + 20466434 20466801 LTR14A 344 - 1 344 101903 71 0 1 5 5 10 145 31 0 42 0 1 68 chain 43556 chr17 81195210 + 20480677 20481294 THE1D-int 1627 + 982 1619 64735 150 10 11 32 27 46 26 0 7 101 5 4 55 6 0 205 chain 286233 chr17 81195210 + 20501294 20504502 L1PA5 6144 - 7 3220 14272 327 1 2 482 0 1 425 0 1 98 0 1 178 1 0 939 0 2 757 chain 27321 chr17 81195210 + 20505651 20505952 AluYk4 311 + 0 301 95205 301 chain 33763 chr17 81195210 + 20509276 20509678 L1PA7 6471 + 6068 6470 77995 69 1 0 169 6 9 144 2 0 11 chain 6295 chr17 81195210 + 20533079 20533204 L1PB1 5432 + 5308 5422 182846 17 31 23 22 1 0 22 1 0 12 1 0 18 chain 40221 chr17 81195210 + 20559504 20560009 MER9a3 513 + 0 513 69004 13 0 1 96 0 1 108 0 3 7 3 0 29 1 0 61 0 5 82 0 1 86 5 6 14 chain 33750 chr17 81195210 + 20580835 20581258 LTR2 463 + 0 447 78022 96 0 4 36 2 1 25 7 27 179 0 1 78 chain 5394 chr17 81195210 + 20586798 20586891 LTR9B 643 - 82 175 191041 35 7 0 11 7 14 33 chain 148103 chr17 81195210 + 20587727 20589414 SVA_D 2077 + 45 2074 24862 506 0 40 76 0 37 20 0 3 184 0 36 26 0 1 4 1 0 7 2 1 48 1 4 5 1 0 11 0 127 122 0 98 673 chain 26996 chr17 81195210 + 20697866 20698239 THE1C 375 - 0 375 96298 181 7 8 103 13 14 69 chain 12868 chr17 81195210 + 20712461 20712629 MER44A 345 + 155 319 148766 77 4 0 87 chain 17199 chr17 81195210 + 20723926 20724202 L1PA16 3655 + 3290 3571 135040 60 48 53 168 chain 21829 chr17 81195210 + 20725691 20725964 AluY 311 + 28 302 120902 104 11 12 158 chain 4408 chr17 81195210 + 20726475 20726559 MLT1J 494 + 107 190 201833 49 23 22 12 chain 22751 chr17 81195210 + 20738099 20738384 AluY 311 + 18 302 116819 105 5 4 175 chain 97514 chr17 81195210 + 20763330 20764415 L1PA3long 6157 + 5075 6156 37419 224 1 0 844 3 0 13 chain 10093 chr17 81195210 + 20769010 20769139 MER85 139 - 1 139 160119 107 0 9 22 chain 128007 chr17 81195210 + 20785014 20786490 L1PA5 6144 + 4659 6140 28564 180 1 0 455 5 9 507 0 1 150 4 5 174 chain 25455 chr17 81195210 + 20796141 20796438 AluYf4 310 + 0 307 102434 64 0 8 115 0 2 118 chain 26835 chr17 81195210 + 20813638 20813953 AluYk4 311 + 0 310 96856 126 5 0 184 chain 6334 chr17 81195210 + 20813991 20814068 MER101 471 + 394 471 182514 77 chain 129639 chr17 81195210 + 20820768 20822231 L1PA5 6144 - 9 1467 28168 250 1 0 132 4 0 1076 chain 59842 chr17 81195210 + 20822231 20822893 L1PA5 6144 + 4012 4674 52905 662 chain 14681 chr17 81195210 + 20826504 20826716 L1PA8 5853 - 0 207 142321 93 1 0 19 2 1 47 7 5 9 1 0 33 chain 42662 chr17 81195210 + 20836218 20836690 L1PA4 6152 - 1 473 65827 472 chain 24475 chr17 81195210 + 20850567 20850868 AluSp 311 - 13 311 107675 178 1 0 72 6 4 44 chain 2729 chr17 81195210 + 20876992 20877021 L1MB7 1623 - 1355 1384 229743 29 chain 136166 chr17 81195210 + 20887356 20889531 SVA_F 1814 + 335 1814 26804 596 254 0 17 0 15 42 357 0 208 100 0 601 chain 15229 chr17 81195210 + 20887957 20888206 SVA_F 1814 + 937 1122 107405 10 1 15 37 1 0 7 49 0 58 54 26 32 chain 1121 chr17 81195210 + 20888120 20888166 SVA_F 1814 + 846 892 176140 9 1 0 25 0 1 11 chain 5688 chr17 81195210 + 20888265 20888358 SVA_F 1814 + 1181 1274 107405 93 chain 2945 chr17 81195210 + 20888376 20888448 SVA_F 1814 + 1117 1187 142594 60 2 0 10 chain 1147 chr17 81195210 + 20888458 20888499 SVA_F 1814 + 620 661 164555 41 chain 2918 chr17 81195210 + 20888522 20888621 SVA_F 1814 + 764 892 155872 11 1 0 13 27 59 8 1 0 29 1 0 8 chain 2628 chr17 81195210 + 20888547 20888574 SVA_F 1814 + 1109 1136 165306 27 chain 8870 chr17 81195210 + 20888830 20888930 SVA_F 1814 + 924 1037 132842 23 0 15 39 1 0 4 1 0 32 chain 8817 chr17 81195210 + 20892525 20892630 L1PB 1623 + 1336 1441 166567 105 chain 4230 chr17 81195210 + 20892786 20892864 LTR52 417 - 128 202 204168 14 1 0 34 13 10 16 chain 5272 chr17 81195210 + 20953482 20953552 L1PB1 5432 + 5355 5422 192298 15 1 0 22 1 0 12 1 0 18 chain 20604 chr17 81195210 + 20958572 20958823 AluY 311 + 35 287 125279 97 0 1 154 chain 3491 chr17 81195210 + 20965753 20965850 LTR37B 484 - 10 106 215501 24 43 42 30 chain 34133 chr17 81195210 + 20968551 20968992 LTR2 463 - 0 463 77432 88 14 15 169 8 29 162 chain 5975 chr17 81195210 + 20975201 20975304 MER2 342 - 26 131 185467 17 22 24 64 chain 55400 chr17 81195210 + 20981127 20981828 HERVK9-int 4720 - 3986 4684 55462 314 1 5 253 1 0 30 3 2 6 1 0 66 13 9 13 chain 22003 chr17 81195210 + 20983933 20984225 AluSq2 311 + 11 295 120214 208 8 1 63 2 1 11 chain 8040 chr17 81195210 + 20988280 20988894 LTR12D 1347 - 347 863 170820 72 490 392 52 chain 3158 chr17 81195210 + 20996842 20996899 Tigger2 2703 - 152 208 221774 6 0 7 6 7 0 10 1 0 27 chain 21238 chr17 81195210 + 21010471 21010739 MER4D1 891 - 585 854 123064 113 0 2 44 1 0 110 chain 80080 chr17 81195210 + 21010748 21011749 LTR13 1007 - 0 1007 43550 44 8 10 140 0 1 113 1 0 4 32 35 276 2 3 381 chain 58687 chr17 81195210 + 21011843 21012591 MER4E1 777 + 0 769 53588 24 2 0 139 0 2 159 0 4 135 0 1 56 0 1 15 6 14 140 5 12 25 1 2 22 1 0 18 chain 4254 chr17 81195210 + 21016874 21016921 LTR24B 570 + 515 562 203836 47 chain 39475 chr17 81195210 + 21018111 21018661 MLT2A2 560 - 0 560 70051 146 4 15 191 41 40 168 chain 26053 chr17 81195210 + 21036502 21036932 MER4A1 472 - 0 472 99818 67 3 5 112 55 68 60 5 6 19 1 0 78 8 33 7 0 2 15 chain 194211 chr17 81195210 + 21036940 21039730 MER4-int 2692 - 0 2550 19655 115 1 11 104 1 0 177 0 3 10 1 0 85 1 0 45 0 1 145 0 1 15 0 1 31 1 2 8 0 5 7 0 1 36 1 0 122 1 0 6 0 2 9 0 1 151 0 5 125 2 3 31 1 0 15 0 30 243 0 2 42 0 11 179 1 0 21 2 0 152 0 5 14 0 4 6 8 0 148 0 9 312 315 0 23 1 0 76 chain 6026 chr17 81195210 + 21045267 21045333 MER4A1 472 - 0 66 185015 66 chain 28349 chr17 81195210 + 21045333 21045803 LTR2B 499 - 0 490 91770 39 17 16 97 15 14 211 47 70 38 1 0 5 chain 24522 chr17 81195210 + 21083071 21083369 AluSp 311 - 4 301 107430 258 2 1 38 chain 16314 chr17 81195210 + 21128701 21128921 L1PA6 6164 + 5934 6156 137451 65 19 21 136 chain 31233 chr17 81195210 + 21158838 21159277 MER4D 903 - 261 701 82106 50 2 0 14 0 3 28 1 0 5 1 0 160 5 6 49 8 9 116 chain 12828 chr17 81195210 + 21162097 21162264 MER41B 635 + 0 168 148941 127 1 2 39 chain 24787 chr17 81195210 + 21162273 21162575 AluY 311 + 0 297 105957 126 5 0 171 chain 8127 chr17 81195210 + 21164247 21164360 MER41A 554 + 430 554 170352 92 1 12 20 chain 8789 chr17 81195210 + 21165199 21165301 L1PA6 6164 + 6056 6158 166710 102 chain 5978 chr17 81195210 + 21173225 21173308 L1ME1 1623 - 347 430 185440 62 0 1 4 1 0 16 chain 3511 chr17 81195210 + 21203675 21203718 MIRb 242 - 131 174 215198 43 chain 10123 chr17 81195210 + 21209433 21209660 MER21C 908 - 125 351 159982 59 87 86 81 chain 5918 chr17 81195210 + 21257057 21257178 L1MB5 1630 + 1435 1572 186008 36 6 0 6 23 46 26 1 0 23 chain 37735 chr17 81195210 + 21359835 21360283 L1PA6 6164 + 5704 6152 72508 129 0 1 173 1 0 145 chain 43086 chr17 81195210 + 21371743 21372250 MER9a1 513 + 0 507 65311 16 1 0 148 2 1 165 1 3 174 chain 11757 chr17 81195210 + 21402715 21402874 MER30 238 + 61 238 153235 37 0 2 10 4 0 6 2 22 100 chain 2952 chr17 81195210 + 21417465 21417497 LTR9 672 + 394 426 226037 32 chain 7521 chr17 81195210 + 21430565 21430680 MER41B 635 - 22 141 174036 48 11 16 22 1 0 33 chain 83526 chr17 81195210 + 21461804 21462822 MER11B 1079 + 0 1042 42107 161 0 3 152 1 18 347 6 5 63 1 4 17 2 4 268 chain 12007 chr17 81195210 + 21472992 21473212 L1P3 4156 - 20 217 152167 21 2 1 7 2 0 95 50 30 43 chain 110205 chr17 81195210 + 21473242 21474645 L1PA8A 6298 + 4881 6290 34156 28 4 9 247 26 26 293 1 0 88 1 2 431 0 1 284 chain 4125 chr17 81195210 + 21481088 21481167 MADE1 96 - 0 96 205579 47 16 33 16 chain 19270 chr17 81195210 + 21488070 21488296 AluYk4 311 - 13 237 129320 166 2 0 58 chain 161883 chr17 81195210 + 21492047 21493832 L1PA3long 6157 + 4369 6157 23083 1115 0 1 77 2 0 265 0 3 30 0 1 296 chain 53368 chr17 81195210 + 21493849 21494426 SVA_D 2077 + 1486 2063 56795 577 chain 23780 chr17 81195210 + 21707331 21707619 AluSp 311 + 1 285 111594 127 4 0 157 chain 22092 chr17 81195210 + 21707949 21708253 THE1B 368 + 13 326 119829 29 1 16 114 1 0 28 4 0 94 1 0 32 chain 116996 chr17 81195210 + 21708321 21709860 THE1B-int 1605 + 34 1593 32125 93 0 1 304 0 25 201 38 0 11 3 43 219 8 0 662 chain 14024 chr17 81195210 + 21709871 21710056 THE1B 368 + 0 199 144490 45 0 15 112 1 0 27 chain 12245 chr17 81195210 + 21754044 21754313 MER4B 649 + 362 620 151224 30 71 61 23 1 0 38 15 16 34 1 0 56 chain 74865 chr17 81195210 + 21756235 21757224 LTR5A 1029 + 0 1027 46079 76 15 21 38 14 0 12 1 0 209 1 2 170 0 56 186 18 6 43 1 2 163 11 12 31 chain 25513 chr17 81195210 + 21814714 21815011 AluYk4 311 + 9 303 102171 123 3 0 171 chain 5681 chr17 81195210 + 21852949 21853012 L1PA2 6032 + 5968 6031 188291 63 chain 7247 chr17 81195210 + 21862093 21862182 L1MB8 1703 + 1468 1557 175787 89 chain 49849 chr17 81195210 + 21866526 21867075 L1PA2 6032 - 628 1176 59118 243 1 0 305 chain 63360 chr17 81195210 + 21867075 21867771 L1PA2 6032 + 5334 6032 51292 540 0 1 23 0 1 133 chain 26915 chr17 81195210 + 21898442 21898811 THE1A 353 - 0 353 96576 62 17 1 180 1 0 59 0 1 50 chain 105814 chr17 81195210 + 21913910 21915310 L1PA8A 6298 - 10 1417 35301 282 0 1 347 19 20 65 0 1 82 2 1 298 26 26 247 4 9 28 chain 8886 chr17 81195210 + 21915427 21915554 L1P3 4156 + 4012 4136 166204 93 2 0 9 2 1 21 chain 82631 chr17 81195210 + 21925694 21926715 MER11B 1079 - 37 1079 42493 268 6 8 85 1 0 347 1 18 154 0 3 159 chain 48836 chr17 81195210 + 21930407 21931341 L1PB1 5432 - 13 811 59849 11 13 16 16 7 6 26 2 0 12 1 0 5 3 1 15 9 0 11 2 0 4 1 0 16 1 0 44 18 16 52 2 0 9 2 0 3 2 0 12 1 0 10 8 7 13 108 0 9 1 2 194 4 3 91 0 5 15 8 0 81 0 1 92 chain 10791 chr17 81195210 + 21965555 21965711 MER30 238 - 5 177 157029 95 2 0 6 10 0 7 0 27 4 0 1 32 chain 29872 chr17 81195210 + 21979120 21979461 L1PA4 6152 + 5810 6151 85197 341 chain 322598 chr17 81195210 + 21996295 22000000 L1PA5 6144 - 12 3720 12498 837 0 4 240 5 1 853 0 1 454 0 1 217 16 15 85 0 1 651 0 1 347 chain 190103 chr17 81195210 + 22000000 22002391 L1P1 4361 - 1936 4357 20036 43 0 4 433 0 1 570 2 3 16 0 11 316 1 0 548 7 11 213 5 6 37 0 1 60 48 56 92 chain 37144 chr17 81195210 + 22012827 22013268 L1PA6 6164 - 2 459 73314 153 7 6 113 0 17 168 chain 3953 chr17 81195210 + 22025091 22025134 tRNA-Gln-CAA_ 72 - 8 51 208103 43 chain 23748 chr17 81195210 + 22037993 22038276 AluY 311 + 18 302 111786 114 0 1 169 chain 128363 chr17 81195210 + 22052222 22053635 L1PA3long 6157 - 1564 2976 28437 1378 1 0 34 chain 141115 chr17 81195210 + 22053635 22055208 L1PA3long 6157 + 4583 6157 25968 801 1 0 756 3 5 12 chain 3172 chr17 81195210 + 22089644 22089685 MLT1C 463 - 67 108 221517 41 chain 10685 chr17 81195210 + 22096870 22097059 MER67C 710 - 8 197 157475 17 16 18 35 3 0 56 15 16 47 chain 24673 chr17 81195210 + 22115157 22115621 LTR7 482 + 0 482 106592 48 29 67 42 61 10 63 0 31 24 11 10 124 13 14 49 chain 15773 chr17 81195210 + 22117136 22117343 L1PA6 6164 + 5954 6160 139046 61 9 8 137 chain 91687 chr17 81195210 + 22131353 22132381 L1PA3long 6157 - 0 1035 39061 967 1 9 54 1 0 5 chain 172147 chr17 81195210 + 22134928 22136936 L1PA5 6144 + 4132 6144 21795 1165 0 4 586 1 0 82 28 22 8 0 7 138 chain 282425 chr17 81195210 + 22145771 22148929 L1PA3long 6157 - 2 3159 14510 18 1 0 1246 0 1 1376 0 1 63 0 1 272 3 0 179 chain 130995 chr17 81195210 + 22148929 22150381 L1PA2 6032 + 4569 6025 27805 1309 0 3 64 0 1 79 chain 27957 chr17 81195210 + 22152674 22153042 L1PA7 6471 + 6081 6458 93137 25 0 2 29 1 0 181 1 0 9 1 10 121 chain 4167 chr17 81195210 + 22206988 22207039 MIR 256 - 99 150 205001 51 chain 120118 chr17 81195210 + 22219744 22221098 L1P1 4361 + 2896 4249 31020 1254 1 0 99 chain 225996 chr17 81195210 + 22226523 22229149 L1PA4 6152 - 7 2639 17531 252 1 0 584 5 11 116 0 1 515 0 1 36 1 0 1116 chain 148262 chr17 81195210 + 22239807 22241530 SVA_D 2077 + 0 2077 24851 11 1 7 597 1 0 267 8 277 28 0 1 32 1 0 14 1 79 75 0 1 4 13 14 37 0 1 624 1 0 8 chain 321215 chr17 81195210 + 25337736 25341332 L1PA3long 6157 + 2559 6156 12546 138 1 0 569 0 2 246 0 1 1329 1 0 816 0 1 491 1 0 4 chain 27989 chr17 81195210 + 25343460 25343806 L1PA7 6471 - 29 383 93037 134 10 11 97 1 0 34 0 7 27 0 1 43 chain 368702 chr17 81195210 + 25355638 25359967 L1P1 4361 + 1 4341 11130 229 5 14 292 1 0 643 2 0 58 1 0 695 0 4 324 0 1 146 14 12 1364 1 0 101 0 2 106 1 3 155 1 0 105 0 3 47 1 0 23 2 1 12 chain 154507 chr17 81195210 + 25360185 25361869 SVA_F 1814 + 10 1814 24044 103 0 8 816 2 0 10 1 15 27 0 49 61 0 49 650 0 2 14 chain 12457 chr17 81195210 + 25362695 25362843 L1PA4 6152 + 6006 6152 150430 23 2 0 123 chain 535416 chr17 81195210 + 25366695 25372649 L1PA2 6032 - 5 6020 3533 315 0 1 1894 0 1 46 0 2 628 0 4 93 1 0 1868 3 37 692 1 5 367 0 16 46 chain 197134 chr17 81195210 + 25385287 25387473 L1PA3long 6157 - 0 2195 19416 1024 0 1 643 0 4 121 0 4 398 chain 8579 chr17 81195210 + 25419047 25419170 MER85 139 + 1 139 167850 27 8 23 88 chain 44289 chr17 81195210 + 25423778 25424823 L1PB1 5432 - 353 1109 63834 156 0 1 88 19 27 12 8 0 28 314 30 49 2 1 38 23 19 10 0 1 106 79 74 108 0 3 5 chain 540091 chr17 81195210 + 25426190 25432202 L1PA2 6032 - 7 6032 2805 10 0 6 539 2 0 1504 0 1 663 5 6 252 0 1 650 0 2 1823 0 4 308 1 0 181 0 1 74 chain 11744 chr17 81195210 + 25445351 25445520 MER30 238 + 48 229 153281 61 4 19 71 3 0 30 chain 3659 chr17 81195210 + 25453966 25454011 MER6B 211 - 147 192 212586 45 chain 235633 chr17 81195210 + 25455518 25458213 L1PA4 6152 - 9 2711 16997 104 0 1 262 1 2 1133 0 5 1195 chain 39095 chr17 81195210 + 25458213 25458664 L1PA4 6152 + 2997 3450 70609 33 0 1 135 1 2 282 chain 255778 chr17 81195210 + 25472814 25475672 L1PA3long 6157 + 3289 6157 15946 656 1 0 222 0 1 1120 0 4 12 0 4 64 0 2 783 chain 178906 chr17 81195210 + 25487752 25489681 L1PA2 6032 - 266 2195 21082 1929 chain 74351 chr17 81195210 + 25508249 25509123 MER11D 897 - 0 897 46334 280 8 31 586 chain 537771 chr17 81195210 + 25510054 25516099 L1PA3long 6157 - 0 6151 3189 137 2 1 1253 1 0 1065 0 1 184 0 1 223 0 2 27 4 7 195 1 100 192 0 1 246 1 0 997 0 1 1451 0 1 66 chain 87877 chr17 81195210 + 25524439 25525456 LTR13 1007 + 0 1007 40422 191 0 1 237 13 1 234 0 1 342 chain 65756 chr17 81195210 + 25528458 25529190 L1P1 4361 - 1877 2615 50212 536 0 6 196 chain 129867 chr17 81195210 + 25534688 25536245 L1PA7 6471 + 4875 6466 28118 379 0 31 336 1 0 77 0 2 321 4 3 112 0 1 186 0 1 4 1 0 128 0 2 8 chain 174802 chr17 81195210 + 25538459 25540352 SVA_E 1901 + 15 1901 21492 138 1 0 664 1 0 26 1 0 84 3 0 32 1 0 942 chain 30344 chr17 81195210 + 25550607 25550937 L1PA3long 6157 + 5812 6142 83802 330 chain 4455 chr17 81195210 + 25555476 25555531 Tigger3c 601 - 284 339 201293 55 chain 28043 chr17 81195210 + 25555879 25556185 AluYf4 310 + 0 306 92844 306 chain 29677 chr17 81195210 + 25574855 25575777 L1MB8 1703 - 78 760 85910 23 71 14 100 1 0 18 47 50 31 10 57 23 1 15 14 1 2 39 0 1 87 335 87 121 chain 516332 chr17 81195210 + 25576239 25582375 L1PA6 6164 + 0 6161 5544 194 3 2 5 0 1 185 8 9 58 2 1 54 2 1 23 1 2 362 1 4 129 0 2 14 0 8 441 4 5 300 1 0 533 0 1 809 0 2 44 1 2 514 0 2 44 0 3 925 1 0 711 0 4 767 chain 4368 chr17 81195210 + 25588598 25588647 MADE1 96 - 1 50 202338 49 chain 20966 chr17 81195210 + 25594074 25594329 AluSq4 311 + 31 288 124049 100 0 1 130 0 1 25 chain 5168 chr17 81195210 + 25596201 25596267 MER41B 635 + 481 549 193372 17 0 1 9 0 1 40 chain 28691 chr17 81195210 + 25597567 25597920 THE1A 353 + 0 353 90359 353 chain 7082 chr17 81195210 + 25605823 25605899 SVA_E 1901 + 1814 1890 176876 76 chain 38574 chr17 81195210 + 25647686 25648148 LTR2 463 - 0 463 71331 88 12 13 362 chain 20493 chr17 81195210 + 25655660 25655905 AluSg4 309 + 12 257 125649 245 chain 11552 chr17 81195210 + 25690358 25690498 L1PA4 6152 - 9 147 154093 16 2 0 122 chain 2416 chr17 81195210 + 25699442 25699479 L1MEf 1413 - 1024 1060 234069 25 2 1 10 chain 23183 chr17 81195210 + 25699926 25700284 THE1B 368 + 0 368 114758 44 8 23 101 1 0 31 3 0 66 39 38 65 chain 113705 chr17 81195210 + 25700284 25701826 THE1B-int 1605 + 0 1589 33171 121 0 9 35 5 6 177 0 4 64 10 35 47 14 12 110 0 2 243 1 0 70 20 23 33 3 4 315 20 19 138 6 11 4 0 1 106 chain 22411 chr17 81195210 + 25701842 25702180 THE1B 368 + 0 354 118434 44 5 20 108 10 9 13 2 0 99 1 0 32 5 10 19 chain 3780 chr17 81195210 + 25709099 25709255 MIRb 242 - 29 186 210654 16 88 91 39 3 1 10 chain 15297 chr17 81195210 + 25731184 25731396 L1PA8 5853 + 5645 5853 140500 30 5 4 14 1 0 47 2 1 19 1 0 93 chain 21035 chr17 81195210 + 25731998 25732301 THE1C 375 - 56 362 123788 44 1 0 60 8 11 80 15 16 85 1 0 4 0 1 5 chain 148978 chr17 81195210 + 25754050 25755706 L1PA5 6144 - 0 1659 24759 338 0 1 427 0 1 287 0 1 604 chain 15288 chr17 81195210 + 25791865 25792061 MER30B 195 - 0 195 140518 115 1 0 80 chain 5695 chr17 81195210 + 25794588 25794667 LTR29 598 - 370 455 188152 23 0 1 4 1 0 44 0 6 7 chain 44582 chr17 81195210 + 25803847 25804396 MER41A 554 - 4 554 63497 456 0 1 93 chain 9817 chr17 81195210 + 25881211 25881340 MER85 139 - 0 139 161510 39 2 12 88 chain 29887 chr17 81195210 + 25881397 25881846 MER1A 529 + 42 529 85140 34 53 82 238 1 8 53 7 9 63 chain 26444 chr17 81195210 + 25940315 25940676 MER61C 433 - 0 367 98254 10 1 0 24 1 0 64 11 16 4 0 1 18 0 1 133 1 2 94 chain 85393 chr17 81195210 + 26015321 26020824 HERVK11-int 2540 - 306 1862 41381 125 8 5 74 6 5 46 2 3 141 1 0 105 16 11 72 2 0 4 0 1 324 0 1 28 21 1 34 27 16 10 1 0 13 10 0 18 27 23 35 19 18 59 2 0 18 59 43 16 3863 44 50 1 0 13 3 0 16 105 69 21 2 0 9 1 0 4 14 8 10 13 8 55 chain 12759 chr17 81195210 + 26023240 26023424 MER11A 1151 - 911 1101 149216 10 1 0 30 1 0 102 11 19 29 chain 325024 chr17 81195210 + 26023710 26028161 HERVK9-int 4720 + 71 4309 12388 23 0 1 16 33 31 17 33 32 856 0 1 206 1 0 424 0 5 285 11 13 4 1 0 685 1 2 24 1 0 53 1 0 4 0 1 722 0 1 9 1 0 404 206 0 196 11 0 223 chain 2943 chr17 81195210 + 26039004 26039074 LTR12F 595 + 144 236 226266 24 25 47 21 chain 424756 chr17 81195210 + 26039485 26044801 HERV9-int 5642 + 11 5492 9425 162 4 5 153 30 32 63 4 6 164 6 7 95 45 18 128 2 0 15 4 0 83 0 85 74 1 2 99 1 2 1140 3 26 614 0 1 159 0 1 269 0 2 19 0 2 5 2 0 686 0 80 105 0 2 6 2 0 295 0 1 613 1 0 227 5 3 32 chain 19811 chr17 81195210 + 26045158 26045403 L1PA5 6144 - 4 253 127779 52 6 10 187 chain 49863 chr17 81195210 + 26052919 26053584 LTR12 884 + 0 884 59110 183 0 4 34 1 108 11 2 3 34 9 13 168 0 103 223 chain 79701 chr17 81195210 + 26055840 26056827 L1PA8 5853 - 7 998 43733 85 2 1 19 2 1 43 5 4 14 1 0 71 2 0 46 1 0 377 0 4 97 0 2 69 0 5 153 chain 3435 chr17 81195210 + 26110315 26110419 MER45A 178 + 76 178 216490 40 15 16 12 25 22 12 chain 80464 chr17 81195210 + 26148854 26149916 MER11C 1089 - 13 1089 43401 15 1 0 17 0 1 156 0 1 104 0 8 172 70 72 263 0 3 264 chain 13091 chr17 81195210 + 26164750 26164922 MER57A1 433 - 0 171 147878 149 6 5 17 chain 5141 chr17 81195210 + 26167949 26168012 MER57A1 433 - 369 433 193665 35 0 1 28 chain 59579 chr17 81195210 + 26173205 26174326 LTR12 884 - 0 884 53062 84 0 1 230 324 0 77 0 1 5 26 25 61 0 22 17 0 66 256 1 0 14 1 0 25 chain 8782 chr17 81195210 + 26191977 26192090 MER85 139 - 0 135 166756 40 4 26 69 chain 5116 chr17 81195210 + 26217008 26217104 MIRb 242 - 65 160 193901 21 24 23 51 chain 3240 chr17 81195210 + 26226182 26226231 MER5A1 166 + 36 76 220228 7 9 0 33 chain 103720 chr17 81195210 + 26227697 26228827 L1PA2 6032 - 6 1136 35793 1130 chain 43319 chr17 81195210 + 26228827 26229295 L1PA2 6032 + 4411 4879 65010 468 chain 45465 chr17 81195210 + 26235108 26236036 MER41B 635 + 0 635 62530 121 1 19 311 338 30 31 3 0 123 chain 50086 chr17 81195210 + 26239177 26239726 L1PA3long 6157 - 8 557 58953 549 chain 26877 chr17 81195210 + 26251709 26252018 AluSp 311 - 1 311 96709 168 0 1 141 chain 13977 chr17 81195210 + 26255130 26255354 MER30 238 + 0 234 144664 38 0 1 67 4 16 23 7 13 8 6 0 24 3 0 44 chain 44145 chr17 81195210 + 26260980 26261627 LTR8 732 - 21 701 64019 134 9 10 14 30 27 17 0 5 156 16 43 63 0 2 76 0 7 115 6 0 11 chain 33899 chr17 81195210 + 26264051 26264670 LTR9B 643 + 9 643 77774 58 58 73 64 1 0 21 0 1 195 32 30 55 3 7 29 63 61 40 chain 23541 chr17 81195210 + 26293967 26294244 AluSp 311 - 9 287 112899 40 0 1 237 chain 2716 chr17 81195210 + 26329517 26329600 MER45C 884 - 129 213 229944 29 40 41 14 chain 5176 chr17 81195210 + 26347640 26347827 L1MA7 2200 + 2015 2170 193274 24 4 0 6 12 5 33 75 55 21 1 0 11 chain 93620 chr17 81195210 + 26362333 26363394 L1PA4 6152 - 9 1069 38468 842 1 0 218 chain 75624 chr17 81195210 + 26363394 26364237 L1PA4 6152 + 4254 5101 45433 384 0 3 319 0 1 140 chain 9004 chr17 81195210 + 26379638 26379767 MER33 330 - 52 187 165572 71 4 10 54 chain 6884 chr17 81195210 + 26395738 26395963 AluJr4 308 - 37 128 178324 52 134 0 39 chain 14769 chr17 81195210 + 26412787 26413066 Tigger3a 397 + 76 384 142035 22 6 9 30 1 0 10 3 13 7 9 0 10 5 37 108 28 22 40 chain 29608 chr17 81195210 + 26426594 26426903 AluYb8 318 - 9 318 86187 309 chain 23219 chr17 81195210 + 26437873 26438118 AluYa5 310 - 14 259 114607 245 chain 39699 chr17 81195210 + 26440309 26440852 MER41A 554 - 20 554 69755 48 6 7 30 3 6 198 27 14 231 chain 57849 chr17 81195210 + 26482284 26482956 L1PA6 6164 + 5483 6161 54065 253 1 0 21 0 1 351 0 4 38 0 2 8 chain 17909 chr17 81195210 + 26503985 26504304 Tigger2 2703 - 130 2703 133085 13 0 2 10 1 0 27 0 5 36 1 0 19 10 21 61 9 32 39 0 9 15 0 2209 9 3 0 66 chain 22848 chr17 81195210 + 26513494 26513854 THE1B 368 - 0 368 116353 75 1 0 5 10 3 59 7 8 18 2 0 32 8 7 77 0 3 10 12 27 44 chain 28497 chr17 81195210 + 26535192 26535493 AluYa8 305 + 0 301 91195 301 chain 2943 chr17 81195210 + 26535523 26535560 L1MC5 759 - 458 495 226247 37 chain 268823 chr17 81195210 + 26538626 26542076 L1P2 5180 + 35 3469 15243 100 15 14 44 2 1 50 16 15 129 76 58 60 26 25 34 1 0 222 0 15 311 51 38 79 0 1 204 0 1 888 1 0 215 0 4 245 0 1 400 1 0 280 chain 8882 chr17 81195210 + 26542082 26542178 L1PA6 6164 + 6060 6156 166221 96 chain 166411 chr17 81195210 + 26550130 26552325 SVA_F 1814 + 10 1814 22469 877 402 0 60 0 15 37 1 0 12 1 0 176 1 0 617 1 0 10 chain 26186 chr17 81195210 + 26551009 26551282 SVA_F 1814 + 1001 1274 99258 273 chain 2616 chr17 81195210 + 26551317 26551372 SVA_F 1814 + 893 948 186199 55 chain 2602 chr17 81195210 + 26551378 26551407 SVA_F 1814 + 855 884 231675 29 chain 43646 chr17 81195210 + 26557544 26558040 LTR2C 499 - 0 499 64634 320 1 4 175 chain 347685 chr17 81195210 + 26560673 26564757 HERVE-int 4064 - 0 4064 11676 230 0 1 430 2 0 1017 0 1 10 0 1 316 0 3 521 26 1 568 1 0 4 0 1 149 7 8 803 chain 43308 chr17 81195210 + 26565870 26566365 LTR2C 499 - 0 499 65033 63 0 1 256 1 4 175 chain 29355 chr17 81195210 + 26577923 26578232 AluYb8 318 - 9 318 87269 309 chain 25856 chr17 81195210 + 26586165 26586517 L1PA8 5853 - 0 347 100626 6 0 1 86 1 0 17 4 0 52 1 0 12 2 1 60 6 8 48 1 0 56 chain 7447 chr17 81195210 + 26587362 26587465 LTR46-int 301 + 90 193 174462 28 1 2 31 1 0 42 chain 31154 chr17 81195210 + 26587883 26588336 LTR46 455 + 0 455 82245 188 0 1 4 12 9 34 4 0 65 4 3 17 4 5 21 6 12 52 0 2 42 chain 78319 chr17 81195210 + 26588745 26589813 MER11C 1089 + 0 1074 44365 23 2 0 197 0 5 39 4 7 252 1 0 48 26 28 145 10 0 30 0 8 103 0 1 8 4 5 162 1 0 13 chain 46980 chr17 81195210 + 26599415 26600051 MER4E 760 + 0 652 61224 23 0 1 110 11 24 22 0 1 77 4 0 102 19 23 195 1 2 72 chain 29663 chr17 81195210 + 26615457 26615767 AluYa5 310 - 0 310 86011 310 chain 9702 chr17 81195210 + 26617879 26618003 MER85 139 - 0 134 162079 39 0 10 85 chain 3853 chr17 81195210 + 26620586 26620637 L1MB2 1706 + 1641 1694 209585 4 0 1 18 0 1 29 chain 5649 chr17 81195210 + 26634748 26634811 LTR12F 595 + 21 84 188576 63 chain 22324 chr17 81195210 + 26675454 26675749 AluSp 311 + 8 295 118802 64 10 0 190 5 7 26 chain 10933 chr17 81195210 + 26722449 26722734 MER21C 908 - 505 865 156476 62 1 0 22 0 7 11 1 0 20 122 192 46 chain 24440 chr17 81195210 + 26754856 26755144 AluSp 311 + 10 298 107859 288 chain 25734 chr17 81195210 + 26761204 26761507 AluSp 311 - 8 311 101144 303 chain 7854 chr17 81195210 + 26761696 26761792 FLAM_A 137 + 20 115 171969 25 1 0 70 chain 6150 chr17 81195210 + 26772690 26772808 AluJr 308 - 209 296 183978 15 36 5 67 chain 62049 chr17 81195210 + 26779401 26780147 L1PREC2 3366 - 642 1393 51878 67 0 1 64 0 1 250 1 2 88 0 1 229 0 1 47 chain 98372 chr17 81195210 + 26782422 26783495 SVA_F 1814 - 0 1210 37202 10 2 0 617 1 0 10 4 0 55 0 1 42 0 142 56 0 1 276 chain 139738 chr17 81195210 + 26785186 26786776 SVA_D 2077 + 0 2056 26182 13 5 0 27 1 26 830 32 75 32 0 403 322 0 3 135 3 0 190 chain 922 chr17 81195210 + 26786062 26786094 SVA_D 2077 + 856 888 145739 32 chain 5128 chr17 81195210 + 26809372 26809446 Charlie4a 502 + 357 432 193808 51 2 3 21 chain 3132 chr17 81195210 + 26831740 26831813 MIRb 242 - 68 143 222327 25 26 28 22 chain 12927 chr17 81195210 + 26857052 26857209 L1PA7 6471 + 6310 6467 148519 157 chain 22097 chr17 81195210 + 26923841 26924111 AluSp 311 + 0 288 119800 110 0 1 21 1 0 25 0 18 113 chain 154993 chr17 81195210 + 26930494 26932324 SVA_D 2077 - 2 2073 23980 134 0 20 520 8 0 11 8 16 155 1 2 36 1 265 38 40 0 833 8 16 8 12 0 17 chain 637 chr17 81195210 + 26931413 26931444 SVA_D 2077 - 1595 1626 219258 31 chain 22477 chr17 81195210 + 26932831 26933125 AluSc 308 - 15 308 118123 139 18 18 5 1 0 131 chain 21953 chr17 81195210 + 26976534 26976781 AluSp 311 + 64 311 120408 247 chain 101107 chr17 81195210 + 26985274 26987287 SVA_B 1603 - 0 1603 36484 500 21 5 16 38 13 39 601 0 13 4 168 14 12 29 93 0 43 24 11 14 5 3 0 27 8 7 396 0 1 71 11 0 54 3 32 21 11 1 17 chain 20045 chr17 81195210 + 26985891 26986435 SVA_B 1603 - 820 1180 126992 47 76 0 23 0 43 100 13 14 37 3 0 36 4 3 35 148 0 22 chain 24982 chr17 81195210 + 26997621 26997915 AluSp 311 + 0 294 104897 28 1 0 110 4 5 151 chain 23731 chr17 81195210 + 27048087 27048385 AluSp 311 + 0 295 111877 52 2 1 122 2 0 120 chain 23698 chr17 81195210 + 27061405 27061716 AluY 311 + 0 294 112040 45 6 0 81 8 0 99 3 0 69 chain 128268 chr17 81195210 + 27062804 27064233 L1PA4 6152 - 9 1445 28504 300 0 1 80 0 1 348 0 1 104 0 4 597 chain 20277 chr17 81195210 + 27078282 27078554 AluSc8 310 + 15 298 126290 125 4 5 116 0 1 6 7 16 14 chain 18190 chr17 81195210 + 27080063 27080282 AluY 311 + 82 303 132354 49 0 2 170 chain 22927 chr17 81195210 + 27105113 27105464 L1PA8 5853 - 0 347 115982 92 2 1 16 8 5 8 0 1 40 1 0 8 10 9 12 1 5 48 2 0 46 12 11 45 chain 23212 chr17 81195210 + 27147968 27148249 AluSc 308 - 5 287 114632 270 0 1 11 chain 20058 chr17 81195210 + 27156236 27156489 AluSp 311 - 16 311 126942 99 0 43 100 3 2 51 chain 9374 chr17 81195210 + 27158366 27158507 L1MD 993 - 324 463 163689 23 1 0 49 8 7 60 chain 6739 chr17 81195210 + 27161739 27161838 HY3 101 + 0 100 179402 38 6 7 55 chain 38778 chr17 81195210 + 27163437 27163907 LTR2 463 - 0 463 71041 405 0 3 29 15 5 21 chain 26308 chr17 81195210 + 27174650 27174955 AluYk4 311 + 0 305 98800 305 chain 24645 chr17 81195210 + 27179931 27180232 AluSp 311 + 2 303 106751 301 chain 5857 chr17 81195210 + 27180553 27180620 MER2 342 - 141 208 186610 67 chain 30464 chr17 81195210 + 27201412 27201838 LTR12D 1347 - 0 503 83504 216 4 5 13 23 0 30 1 0 20 0 98 80 5 7 34 chain 36363 chr17 81195210 + 27220619 27221082 LTR2B 499 + 9 499 74417 5 1 0 10 0 10 37 1 0 40 0 19 369 chain 3984 chr17 81195210 + 27293994 27294086 MIR 256 + 33 126 207630 20 31 32 41 chain 25559 chr17 81195210 + 27342886 27343183 AluYk4 311 - 21 311 101939 7 7 0 283 chain 4090 chr17 81195210 + 27390039 27390087 MER5B 177 + 5 53 206081 48 chain 22540 chr17 81195210 + 27391743 27392104 THE1C 375 - 0 375 117850 62 0 3 16 0 2 16 2 1 25 57 67 183 chain 27199 chr17 81195210 + 27415067 27415371 AluYf4 310 - 6 310 95605 304 chain 3111 chr17 81195210 + 27487655 27487691 MIRb 242 - 197 233 222711 36 chain 3653 chr17 81195210 + 27500703 27500750 MADE1 96 + 46 92 212735 9 1 0 37 chain 26958 chr17 81195210 + 27510733 27511334 L1MC1 2226 + 1637 2192 96412 77 10 5 57 1 2 64 30 27 17 7 0 31 1 0 62 4 1 15 2 0 49 39 33 6 5 0 17 66 52 31 1 0 9 chain 21594 chr17 81195210 + 27521016 27521278 AluSp 311 + 14 277 121790 123 5 6 134 chain 24286 chr17 81195210 + 27535716 27536055 L1PA8 5853 + 5521 5853 108732 43 1 0 44 2 0 70 2 1 10 2 1 50 2 1 19 18 17 76 chain 8900 chr17 81195210 + 27537339 27537468 MER63C 923 + 77 223 166140 58 8 25 63 chain 25316 chr17 81195210 + 27551071 27551349 AluYk4 311 - 18 296 103141 278 chain 3244 chr17 81195210 + 27559516 27559552 MLT1D 503 + 436 472 220125 36 chain 6406 chr17 81195210 + 27561038 27561115 L1PB3 3668 - 378 455 181977 77 chain 15610 chr17 81195210 + 27562796 27562987 L1PA5 6144 - 1 189 139549 159 5 2 27 chain 23774 chr17 81195210 + 27563238 27563548 AluSp 311 - 12 311 111631 18 13 5 144 3 0 132 chain 3427 chr17 81195210 + 27684995 27685039 L1MB7 1623 - 196 239 216626 4 1 0 39 chain 24491 chr17 81195210 + 27711545 27711844 AluSc 308 - 10 308 107587 156 9 8 134 chain 28804 chr17 81195210 + 27738106 27738408 AluYa5 310 - 8 310 89878 302 chain 24057 chr17 81195210 + 27746214 27746506 AluSp 311 - 12 310 110001 273 0 6 19 chain 34585 chr17 81195210 + 27757120 27757732 MER51A 677 - 18 677 76775 75 8 0 67 1 0 60 32 33 93 29 95 44 71 60 132 chain 38210 chr17 81195210 + 27759036 27759535 MER9a3 513 - 0 513 71824 78 0 1 129 0 10 21 19 18 76 0 1 68 1 2 89 0 2 18 chain 149759 chr17 81195210 + 27760862 27762866 MER61-int 3695 - 39 2090 24655 48 1 3 11 6 5 408 4 7 18 5 6 4 0 1 270 0 1 11 11 10 87 1 0 94 0 1 61 1 0 16 1 4 169 0 1 9 1 3 276 0 4 29 10 12 114 5 38 59 1 0 114 7 0 134 0 5 18 chain 5755 chr17 81195210 + 27800630 27800733 Tigger1 2417 - 1446 1546 187602 33 7 5 23 8 7 32 chain 21129 chr17 81195210 + 27853031 27853305 AluSp 311 + 2 284 123451 44 0 18 153 10 0 67 chain 133509 chr17 81195210 + 27859373 27860867 SVA_D 2077 - 8 2077 27317 144 0 1 383 0 37 67 0 49 54 8 416 120 0 37 700 0 43 18 chain 23197 chr17 81195210 + 27863343 27863623 AluY 311 + 10 288 114688 63 2 0 215 chain 25433 chr17 81195210 + 27867576 27867887 AluSp 311 - 0 311 102530 311 chain 3047 chr17 81195210 + 27870642 27870674 U2 167 + 0 32 224049 32 chain 25450 chr17 81195210 + 27907788 27908096 AluSp 311 - 9 311 102457 32 8 1 107 0 1 161 chain 13665 chr17 81195210 + 27913243 27913456 MER30 238 + 32 237 145725 12 0 1 62 32 23 107 chain 25232 chr17 81195210 + 28012855 28013166 AluSp 311 - 1 311 103575 281 2 1 28 chain 10511 chr17 81195210 + 28021019 28021217 MER30 238 + 0 238 158200 24 26 44 33 7 26 26 0 6 39 3 0 40 chain 14629 chr17 81195210 + 28045551 28045733 AluY 311 + 82 265 142487 48 1 2 133 chain 40659 chr17 81195210 + 28052394 28052926 L1PA8 5853 + 5329 5847 68353 57 7 0 178 2 1 43 2 0 70 2 1 11 6 5 45 2 1 19 1 0 87 chain 47763 chr17 81195210 + 28064961 28065510 L1PA5 6144 - 10 563 60647 45 0 4 504 chain 23746 chr17 81195210 + 28076281 28076731 Tigger3 1187 - 0 437 111802 11 1 0 40 8 7 41 7 5 18 4 0 9 18 24 39 1 0 15 1 0 23 10 0 20 35 36 149 chain 25277 chr17 81195210 + 28110370 28110731 MLT2A1 477 - 101 477 103333 94 8 0 62 0 1 46 8 12 20 0 1 28 1 17 6 0 1 88 chain 5685 chr17 81195210 + 28115046 28115137 L1MB3 1562 - 722 813 188243 66 1 0 4 4 5 16 chain 28202 chr17 81195210 + 28160296 28160699 L1M1 2793 - 108 505 92300 12 1 0 45 7 6 10 0 4 284 22 13 4 0 1 18 chain 8322 chr17 81195210 + 28184036 28184133 THE1C-int 1605 - 0 98 169273 47 0 1 50 chain 22356 chr17 81195210 + 28184151 28184506 THE1B 368 - 0 368 118681 58 1 2 15 7 6 101 15 15 60 6 7 22 14 11 16 0 15 40 chain 68556 chr17 81195210 + 28203619 28204597 L1MA2 4263 + 3144 4106 49008 36 12 14 57 0 1 300 1 0 15 2 0 17 6 2 75 2 1 146 3 0 144 28 26 66 34 27 4 0 1 30 chain 31200 chr17 81195210 + 28213027 28213482 THE1B-int 1605 + 18 487 82162 78 57 0 17 0 3 122 0 3 112 0 1 41 1 65 27 chain 374722 chr17 81195210 + 28224133 28228307 L1PA4 6152 + 1970 6152 10934 416 0 4 775 1 0 534 0 1 240 0 1 641 2 0 722 0 4 730 0 1 113 chain 30493 chr17 81195210 + 28230940 28231354 L1P3 4156 + 3727 4137 83444 106 2 0 31 0 1 242 2 0 6 6 5 19 chain 51774 chr17 81195210 + 28233239 28234050 L1PA11 4918 + 3874 4646 57772 15 0 5 389 0 1 44 6 0 11 1 0 56 1 0 12 2 0 67 2 0 11 8 7 16 1 0 9 3 0 5 2 0 8 13 9 15 1 0 13 2 0 11 31 21 6 2 0 6 2 0 27 5 0 8 chain 23941 chr17 81195210 + 28240652 28240951 AluSp 311 - 12 311 110677 148 0 3 6 4 2 4 1 0 136 chain 18781 chr17 81195210 + 28242855 28243061 L1PA5 6144 - 6 212 130733 206 chain 33564 chr17 81195210 + 28263103 28263486 L1PA5 6144 + 5763 6142 78299 372 4 0 7 chain 74553 chr17 81195210 + 28272610 28274328 L1PB3 3668 + 2437 3566 46235 60 11 20 40 2 7 101 1 0 74 0 1 196 10 14 28 6 9 21 5 0 268 323 0 14 1 0 101 1 0 78 291 15 16 33 29 37 chain 19658 chr17 81195210 + 28280047 28280340 L1PREC2 3366 + 2211 2515 128230 108 11 13 15 12 16 130 1 6 16 chain 37368 chr17 81195210 + 28312414 28312909 MER9a3 513 - 0 513 73007 76 0 3 21 0 2 105 0 10 37 4 3 78 4 5 62 0 1 90 0 2 18 chain 367163 chr17 81195210 + 28312920 28317588 HERVK9-int 4720 - 11 4369 11181 4 1 0 308 0 1 303 2 0 109 334 14 847 0 1 52 0 1 215 2 1 24 5 1 493 1 0 291 1 0 310 0 9 96 1 0 997 0 9 272 chain 28962 chr17 81195210 + 28313655 28313964 AluYf4 310 - 1 310 89172 309 chain 38516 chr17 81195210 + 28318274 28318775 MER9a3 513 - 0 513 71417 79 0 1 128 0 10 39 3 0 64 12 13 32 0 1 35 7 8 83 0 1 19 chain 80041 chr17 81195210 + 28321834 28323161 HSMAR2 1300 - 79 1298 43572 23 0 2 121 1 0 14 8 11 71 123 0 101 3 2 90 0 1 69 5 1 103 0 1 71 15 16 56 0 1 26 73 75 156 0 4 101 0 5 9 6 5 22 1 2 15 1 2 43 chain 2990 chr17 81195210 + 28328129 28328177 MER74B 573 + 403 451 225234 15 4 3 14 0 1 15 chain 5476 chr17 81195210 + 28331523 28331605 LTR54 533 - 445 528 190245 33 7 8 42 chain 403874 chr17 81195210 + 28336834 28342494 L1PA6 6164 - 2 4682 9975 181 6 11 577 0 2 402 0 9 125 8 0 536 1 0 132 997 0 228 4 5 58 6 7 695 1 0 4 5 7 584 0 3 270 0 1 110 0 2 490 0 1 240 chain 81356 chr17 81195210 + 28338808 28339799 LTR13 1007 + 0 1007 43023 141 9 13 227 2 3 272 0 10 149 6 7 185 chain 3634 chr17 81195210 + 28342496 28342540 L1PA6 6164 + 1401 1445 213068 44 chain 308535 chr17 81195210 + 28349811 28353197 L1PA3long 6157 + 2756 6157 13066 506 0 1 4 1 0 1148 1 0 678 0 16 1048 chain 16092 chr17 81195210 + 28364893 28365144 Tigger1 2417 + 369 621 138083 53 16 13 83 15 14 24 0 4 24 0 1 36 chain 20957 chr17 81195210 + 28377182 28377452 AluSp 311 - 42 311 124074 114 13 13 10 1 0 132 chain 7522 chr17 81195210 + 28386075 28386165 HY4 93 - 3 93 174027 90 chain 5550 chr17 81195210 + 28387175 28387238 L1PA3long 6157 + 6094 6157 189571 63 chain 13393 chr17 81195210 + 28395339 28395588 L1MA5 2750 + 1126 1365 146745 20 65 55 164 chain 23127 chr17 81195210 + 28410490 28410771 AluSp 311 - 30 311 115012 281 chain 20662 chr17 81195210 + 28415972 28416204 L1PA5 6144 - 12 244 125097 232 chain 9563 chr17 81195210 + 28421261 28421372 L1PA6 6164 + 6045 6156 162767 111 chain 24043 chr17 81195210 + 28424078 28424361 AluSp 311 - 16 300 110099 242 0 1 41 chain 3753 chr17 81195210 + 28464563 28464604 MLT1I 406 + 296 337 211091 41 chain 8368 chr17 81195210 + 28478063 28478163 L1MB7 1623 - 437 537 169034 100 chain 7310 chr17 81195210 + 28481766 28481869 Tigger4a 237 - 23 127 175375 30 4 5 69 chain 23806 chr17 81195210 + 28483543 28483825 AluSp 311 - 18 300 111438 282 chain 3120 chr17 81195210 + 28495559 28495592 L1PA4 6152 + 6103 6136 222540 33 chain 8975 chr17 81195210 + 28567974 28568144 LTR2C 499 - 317 491 165745 12 2 0 59 8 7 41 29 36 19 chain 56727 chr17 81195210 + 28577067 28577887 L1PB2 3958 + 3035 3838 54702 42 0 1 30 7 6 90 1 5 54 0 4 40 2 0 67 21 0 56 0 2 19 2 0 102 5 4 60 1 0 48 4 8 8 1 0 73 2 0 21 7 6 57 chain 11198 chr17 81195210 + 28679242 28680179 L1MB7 1623 - 585 876 155428 23 1 2 12 12 11 51 5 0 24 725 68 42 0 16 42 chain 27091 chr17 81195210 + 28682506 28682856 THE1A 353 - 5 353 95967 238 1 0 91 2 1 18 chain 8907 chr17 81195210 + 28685486 28685602 L1P1 4361 + 4185 4328 166097 97 0 27 19 chain 34602 chr17 81195210 + 28700812 28701408 LTR18B 584 - 0 584 76754 33 8 9 74 2 1 21 1 15 12 2 1 9 51 36 51 19 22 39 2 0 50 3 0 21 8 0 190 chain 519631 chr17 81195210 + 28733839 28740041 L1PA6 6164 - 4 6164 5197 280 5 3 84 0 1 974 4 14 737 35 0 7 13 0 171 1 0 217 1 0 161 0 4 316 8 7 846 5 6 935 0 1 491 0 4 204 14 15 115 1 0 499 1 0 12 10 1 55 chain 9059 chr17 81195210 + 28751006 28751163 MER4B 649 - 9 168 165261 7 1 0 53 0 1 17 1 0 4 25 28 49 chain 252737 chr17 81195210 + 28766426 28769143 L1PA2 6032 - 1 2718 16093 2717 chain 105948 chr17 81195210 + 28773195 28774389 L1PA5 6144 - 0 1195 35271 733 0 1 461 chain 125861 chr17 81195210 + 28780119 28781681 THE1A-int 1579 - 8 1579 29139 9 1 0 64 0 5 48 1 6 174 13 12 174 0 1 1078 chain 23081 chr17 81195210 + 28786262 28786545 L1PA4 6152 - 14 304 115234 134 18 25 131 chain 43367 chr17 81195210 + 28789669 28790180 MER9a2 513 - 0 513 64972 66 0 2 445 chain 28366 chr17 81195210 + 28827899 28828197 AluYa5 310 - 12 310 91708 298 chain 120461 chr17 81195210 + 28849852 28851242 SVA_D 2077 + 53 2070 30885 146 0 84 176 0 76 253 0 1 89 1 0 30 2 0 8 3 1 30 12 0 45 0 145 14 0 338 581 chain 58649 chr17 81195210 + 28863441 28864088 SVA_C 1631 - 9 741 53606 592 0 87 39 2 0 14 chain 8070 chr17 81195210 + 28873696 28873849 L1PA16 3655 - 896 1048 170649 53 45 44 55 chain 5209 chr17 81195210 + 28875485 28875672 MLT-int 841 - 631 825 192929 29 94 110 10 9 0 45 chain 28307 chr17 81195210 + 28876345 28876807 MER1A 529 + 63 525 91913 17 17 17 155 0 1 189 66 65 18 chain 143766 chr17 81195210 + 28888202 28889854 L1PA5 6144 - 0 1654 25521 11 1 3 332 18 11 4 1 0 450 0 4 28 0 4 807 chain 63983 chr17 81195210 + 28890407 28891179 LTR5_Hs 974 - 198 973 51014 64 0 2 53 0 1 304 1 0 340 0 1 10 chain 16686 chr17 81195210 + 28915942 28916185 LTR7C 471 - 32 277 136447 34 1 0 26 4 6 89 10 11 79 chain 74541 chr17 81195210 + 28922381 28923749 MER11C 1089 - 30 1089 46240 69 0 2 68 1 0 54 0 1 127 1 2 35 1 0 6 6 10 107 55 34 11 0 20 42 0 1 149 0 4 58 3 12 17 328 0 230 chain 89081 chr17 81195210 + 28923812 28924822 L1PA3long 6157 - 0 1012 39975 12 3 5 236 1 0 133 1 2 624 chain 5618 chr17 81195210 + 28924822 28924890 LTR5B 1012 - 937 1004 188888 25 1 0 42 chain 28588 chr17 81195210 + 28939112 28939543 MER1A 529 - 6 483 90790 23 50 49 47 0 6 263 4 44 15 0 1 29 chain 23699 chr17 81195210 + 28984519 28984810 AluSg7 307 - 0 292 112038 180 1 2 110 chain 24272 chr17 81195210 + 29005824 29006123 AluY 311 + 10 292 108834 122 17 0 160 chain 5702 chr17 81195210 + 29019080 29019146 MLT1A0 366 + 224 290 188097 66 chain 76468 chr17 81195210 + 29027058 29028026 LTR5_Hs 974 - 0 974 45229 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 64398 chr17 81195210 + 29062746 29063489 SVA_D 2077 - 0 1760 50843 607 0 328 16 9 698 111 chain 23091 chr17 81195210 + 29066837 29067115 AluSp 311 - 23 301 115191 278 chain 26812 chr17 81195210 + 29073471 29073776 AluYf4 310 - 6 309 96934 40 2 0 263 chain 23175 chr17 81195210 + 29113728 29114007 AluSq2 311 - 20 301 114785 156 1 3 122 chain 22588 chr17 81195210 + 29118878 29119154 AluSp 311 - 26 300 117643 133 2 0 141 chain 11820 chr17 81195210 + 29140642 29140786 L1PA4 6152 - 20 160 152945 106 4 0 34 chain 4471 chr17 81195210 + 29168851 29168907 L1MB8 1703 - 320 376 201103 56 chain 19063 chr17 81195210 + 29169017 29169239 AluSg 306 + 11 233 129927 222 chain 6435 chr17 81195210 + 29188860 29188939 U6 107 + 0 78 181736 64 1 0 14 chain 23230 chr17 81195210 + 29195511 29195797 AluSg4 309 - 0 284 114545 14 2 0 16 1 0 78 0 1 175 chain 24825 chr17 81195210 + 29208995 29209287 AluSp 311 + 0 295 105739 91 0 3 201 chain 3119 chr17 81195210 + 29210992 29211029 L1MB2 1706 - 25 62 222560 37 chain 5223 chr17 81195210 + 29222280 29222338 HY4 93 + 35 93 192797 58 chain 87583 chr17 81195210 + 29266837 29268695 HSMAR2 1300 - 54 1288 40540 127 659 34 66 15 16 48 7 6 156 2 0 10 0 1 375 15 15 65 0 2 106 1 0 155 0 1 51 chain 3243 chr17 81195210 + 29273213 29273253 MER5A1 166 + 125 165 220172 40 chain 9725 chr17 81195210 + 29280854 29280998 MER30 238 + 68 230 161962 31 11 0 13 1 27 57 0 3 31 chain 4792 chr17 81195210 + 29289781 29289836 LTR43 600 + 545 600 197443 55 chain 175492 chr17 81195210 + 29305627 29308367 SVA_E 1901 - 2 1901 21396 638 2 1 209 220 0 43 1 0 6 48 0 79 568 0 87 1 0 19 1 0 672 1 0 145 chain 2476 chr17 81195210 + 29306476 29306512 SVA_E 1901 - 724 760 136898 36 chain 5233 chr17 81195210 + 29306513 29306646 SVA_E 1901 - 886 1022 132289 35 0 12 2 5 0 39 4 0 48 chain 2565 chr17 81195210 + 29306646 29306672 SVA_E 1901 - 646 672 230864 26 chain 2490 chr17 81195210 + 29306746 29306776 SVA_E 1901 - 948 978 172794 30 chain 1759 chr17 81195210 + 29306873 29306927 SVA_E 1901 - 626 680 131581 54 chain 2534 chr17 81195210 + 29306927 29307048 SVA_E 1901 - 978 1097 131402 106 1 0 5 1 0 8 chain 4383 chr17 81195210 + 29307048 29307098 SVA_E 1901 - 927 978 141352 14 1 2 35 chain 18824 chr17 81195210 + 29307140 29307338 SVA_E 1901 - 669 867 130597 198 chain 2215 chr17 81195210 + 29307369 29307437 SVA_E 1901 - 772 839 131581 34 1 0 33 chain 27203 chr17 81195210 + 29308416 29308900 L1M1 2793 - 1677 2133 95581 62 0 2 49 1 0 101 1 0 6 9 7 50 1 0 8 2 0 29 1 0 27 15 10 20 2 0 5 2 0 12 46 33 35 chain 6503 chr17 81195210 + 29331453 29331528 MLT1A0 366 - 63 138 181217 75 chain 22349 chr17 81195210 + 29362679 29362934 SVA_B 1603 + 1349 1603 118705 51 2 0 82 0 1 120 chain 195098 chr17 81195210 + 29445313 29448864 L1PA7 6471 - 1 2423 19575 12 0 2 134 2 1 5 0 1 16 1 2 455 327 0 216 0 2 21 0 4 89 0 2 219 13 13 336 1 2 260 0 4 319 829 11 296 chain 5496 chr17 81195210 + 29447745 29447815 L1PA7 6471 + 6399 6470 190082 57 1 2 12 chain 18008 chr17 81195210 + 29478902 29479100 L1PA5 6144 - 0 198 132837 198 chain 5031 chr17 81195210 + 29485068 29485210 L1MA5A 2387 - 130 250 194821 4 1 0 21 50 17 14 1 15 29 2 0 20 chain 22801 chr17 81195210 + 29500152 29500427 AluY 311 + 0 282 116570 72 0 6 54 0 1 149 chain 137833 chr17 81195210 + 29502550 29504190 L1PA7 6471 - 5 1667 26509 263 0 4 507 0 12 61 1 0 16 0 4 537 0 3 255 chain 300346 chr17 81195210 + 29504201 29508168 L1P2 5180 + 737 4553 13403 39 7 22 122 0 6 20 0 43 55 0 1 4 1 0 8 0 4 487 1 2 28 1 2 538 0 6 206 0 1 46 3 0 365 5 6 40 0 2 160 0 1 238 239 0 74 0 1 284 14 21 121 1 3 5 2 0 73 1 0 64 1 0 669 9 13 36 chain 31529 chr17 81195210 + 29510612 29511032 MLT2A1 477 + 10 469 81597 136 1 0 23 13 11 24 0 1 173 7 48 43 chain 315553 chr17 81195210 + 29511036 29515592 HERVL-int 5654 + 0 5654 12785 16 2 0 162 0 1 70 3 0 85 330 0 642 0 1687 256 0 2 74 1 3 47 0 1 4 2 1 335 1 0 183 1 0 5 12 13 382 0 3 203 0 1 117 1 8 240 303 0 11 1 0 199 0 25 30 0 1 9 0 1 126 2 0 133 0 8 13 18 8 226 1 4 142 1 0 19 0 6 16 9 10 49 1 4 73 chain 28784 chr17 81195210 + 29511385 29511695 AluYf4 310 + 0 310 89964 310 chain 32941 chr17 81195210 + 29515592 29516037 MLT2A1 477 + 0 477 79306 168 5 2 9 0 1 205 26 60 32 chain 61178 chr17 81195210 + 29519195 29519947 MER4E 760 - 5 760 52261 267 0 4 99 0 4 76 1 0 67 3 0 7 1 0 19 1 0 194 0 1 17 chain 12293 chr17 81195210 + 29546520 29546658 L1PA4 6152 - 18 156 151036 138 chain 5073 chr17 81195210 + 29566657 29566775 L1MA3 4352 - 5 114 194381 17 8 4 12 1 0 22 15 13 21 2 0 20 chain 22257 chr17 81195210 + 29614866 29615107 L1PA3long 6157 + 5914 6155 119093 241 chain 8715 chr17 81195210 + 29626209 29626305 L1PA3long 6157 + 6060 6156 167118 96 chain 30295 chr17 81195210 + 29641636 29642111 L1MA2 4263 - 165 633 83945 40 7 0 88 14 12 19 7 10 123 16 13 113 21 23 27 chain 32486 chr17 81195210 + 29659595 29659940 L1HS 6032 - 0 345 80052 345 chain 3749 chr17 81195210 + 29678298 29678352 L1MA8 2339 + 2210 2263 211143 47 1 0 6 chain 21019 chr17 81195210 + 29707276 29707520 AluYg6 310 + 54 298 123851 77 1 0 97 0 1 69 chain 24712 chr17 81195210 + 29774031 29774321 AluY 311 + 11 300 106375 121 0 1 136 2 0 31 chain 22732 chr17 81195210 + 29812972 29813236 AluSx4 309 + 1 265 116911 264 chain 22188 chr17 81195210 + 29826406 29826664 AluSc5 308 - 43 300 119412 147 1 0 110 chain 6875 chr17 81195210 + 29877092 29877164 tRNA-Thr-ACG 72 + 0 72 178399 72 chain 22634 chr17 81195210 + 29909918 29910187 AluY 311 + 11 286 117405 6 0 6 263 chain 23509 chr17 81195210 + 29916845 29917141 AluSz 310 + 0 294 113077 26 1 0 99 1 0 169 chain 28141 chr17 81195210 + 29932474 29932775 AluYa5 310 + 0 300 92500 97 1 0 203 chain 38988 chr17 81195210 + 29938036 29938576 MER41A 554 - 0 554 70754 110 0 6 80 8 7 105 12 19 54 4 6 167 chain 26927 chr17 81195210 + 29943229 29943521 AluYf4 310 + 0 293 96527 206 0 1 86 chain 17826 chr17 81195210 + 29958113 29958378 LTR7B 505 - 0 373 133314 51 14 13 89 0 41 56 16 84 39 chain 25196 chr17 81195210 + 29959105 29959463 LTR7B 505 + 0 491 103759 44 0 15 46 0 10 56 1 0 4 8 77 59 0 41 85 18 17 37 chain 38621 chr17 81195210 + 29960137 29960628 MER9a3 513 + 15 513 71265 4 0 1 90 0 1 68 12 13 64 1 0 125 1 5 49 0 1 77 chain 360760 chr17 81195210 + 29961284 29965545 HERVK9-int 4720 + 334 4720 11347 199 0 1 307 0 9 37 0 67 666 0 1 715 10 7 1139 0 10 128 6 14 401 0 34 297 1 0 234 1 0 120 chain 39410 chr17 81195210 + 29965558 29966038 MER9a3 513 + 15 513 70148 31 0 1 63 0 1 147 2 17 161 0 1 76 chain 30992 chr17 81195210 + 29968481 29968950 LTR9 672 + 69 537 82533 132 23 22 119 0 2 8 21 20 148 7 6 11 chain 47026 chr17 81195210 + 29970156 29970760 LTR12 884 + 0 866 61184 25 1 0 33 0 111 28 0 25 95 0 25 36 2 0 157 0 1 12 0 103 215 chain 10675 chr17 81195210 + 29970909 29971033 MER41B 635 + 511 635 157504 124 chain 14419 chr17 81195210 + 29974403 29974582 LOR1b 457 + 232 411 143152 179 chain 7453 chr17 81195210 + 29983980 29984427 MER82 654 - 21 486 174430 43 215 235 31 97 96 34 3 2 24 chain 525276 chr17 81195210 + 29991932 29998054 L1PA5 6144 - 1 6144 4662 5 2 0 530 6 0 91 0 2 29 0 3 280 8 9 240 1 0 465 1 0 50 1 2 946 0 1 236 0 2 579 0 1 363 7 0 497 0 1 603 1 4 35 9 0 176 0 3 470 0 1 351 6 32 17 0 2 117 chain 23958 chr17 81195210 + 30017648 30017935 AluSp 311 - 13 300 110576 287 chain 23762 chr17 81195210 + 30040872 30041278 L1MA2 4263 + 3712 4114 111692 78 1 0 6 13 10 152 1 0 6 2 1 21 24 34 38 15 8 39 1 0 9 chain 6693 chr17 81195210 + 30058819 30059019 LTR12 884 + 229 386 179735 26 25 0 16 0 25 25 24 0 15 24 8 21 2 1 12 2 0 8 chain 62703 chr17 81195210 + 30089057 30089881 LTR12 884 + 0 884 51587 21 7 6 51 0 66 131 1 0 65 16 11 27 2 0 296 0 4 31 1 0 175 chain 464923 chr17 81195210 + 30089909 30095741 HERV9-int 5642 + 0 5642 8225 23 4 5 4 1 0 302 0 2 91 3 5 363 1 0 50 4 8 107 85 0 105 80 0 42 3 0 710 0 1 422 1 2 891 1 0 1377 0 2 73 0 1 567 1 4 74 1 0 226 5 3 39 4 2 24 1 0 59 1 0 14 28 5 19 4 0 3 2 0 17 chain 55848 chr17 81195210 + 30098353 30099147 LTR12 884 + 0 884 55215 25 1 0 30 0 107 23 0 91 46 1 0 54 2 0 340 104 0 168 chain 481869 chr17 81195210 + 30107950 30113551 L1PA4 6152 + 10 6141 7660 86 0 525 434 0 1 5 1 0 82 6 8 25 9 0 203 0 1 442 0 1 415 1 2 123 0 1 851 0 1 2088 0 5 225 0 1 503 0 1 102 chain 43346 chr17 81195210 + 30120717 30121190 L1PA2 6032 + 5558 6032 64991 217 0 1 256 chain 10324 chr17 81195210 + 30139662 30139832 THE1B 368 + 2 172 159016 11 2 0 34 0 1 54 32 33 37 chain 17371 chr17 81195210 + 30159044 30159363 LTR12_ 688 - 0 334 134596 92 9 15 18 63 71 100 1 2 36 chain 24133 chr17 81195210 + 30160255 30160546 AluSc8 310 + 11 298 109567 115 4 0 172 chain 4269 chr17 81195210 + 30163902 30163954 L1MB5 1630 + 1250 1302 203630 52 chain 6282 chr17 81195210 + 30175697 30175787 L1PB1 5432 + 5345 5430 182935 25 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 25509 chr17 81195210 + 30180401 30180696 AluSg7 307 - 11 305 102181 164 1 0 130 chain 4408 chr17 81195210 + 30212099 30212173 L1PB1 5432 + 5327 5422 201831 5 1 0 16 1 0 22 1 0 13 0 24 15 chain 3982 chr17 81195210 + 30247792 30247840 MER63B 433 - 206 254 207661 48 chain 23541 chr17 81195210 + 30249719 30250008 AluSp 311 - 12 301 112898 289 chain 18234 chr17 81195210 + 30250353 30250586 AluY 311 + 65 295 132248 58 2 0 9 0 1 145 6 4 13 chain 23662 chr17 81195210 + 30271155 30271430 AluSp 311 - 20 295 112239 275 chain 25264 chr17 81195210 + 30277801 30278097 AluYf4 310 - 15 309 103398 31 9 7 256 chain 2604 chr17 81195210 + 30350498 30350542 MIR 256 + 6 52 231654 12 5 7 27 chain 24615 chr17 81195210 + 30398365 30398660 AluSp 311 - 15 309 106911 168 1 0 126 chain 29255 chr17 81195210 + 30436751 30437059 AluYf4 310 + 0 308 87766 308 chain 24090 chr17 81195210 + 30456802 30457087 AluSp 311 - 17 302 109797 285 chain 79967 chr17 81195210 + 30462078 30463075 LTR13 1007 - 0 1007 43614 80 0 2 112 0 1 101 25 28 54 2 1 244 3 4 226 9 13 141 chain 24512 chr17 81195210 + 30475006 30475308 AluY 311 + 4 306 107480 128 0 1 144 2 1 28 chain 7544 chr17 81195210 + 30487141 30487235 MER52D 1964 + 1114 1207 173910 56 1 0 37 chain 25505 chr17 81195210 + 30492081 30492384 AluY 311 + 4 311 102199 66 0 3 59 0 1 178 chain 78448 chr17 81195210 + 30492818 30494347 Tigger1 2417 - 0 1247 44295 17 40 59 14 1 0 28 314 0 27 13 17 4 0 1 397 0 3 42 15 18 67 3 0 25 15 20 20 1 3 41 14 20 109 30 20 80 0 6 87 4 1 121 chain 21988 chr17 81195210 + 30500467 30500751 AluSg4 309 + 15 302 120278 4 0 1 254 4 6 22 chain 148996 chr17 81195210 + 30505237 30507666 SVA_A 1864 + 29 1861 24754 373 190 0 56 0 39 79 5 4 34 3 0 12 37 0 137 75 0 61 191 0 62 1 0 27 2 0 111 2 0 120 154 0 93 10 8 466 0 22 128 chain 11616 chr17 81195210 + 30505611 30505800 SVA_A 1864 + 519 708 50564 189 chain 2213 chr17 81195210 + 30505989 30506025 SVA_A 1864 + 850 886 50564 36 chain 2151 chr17 81195210 + 30506203 30506238 SVA_A 1864 + 912 947 50564 35 chain 9280 chr17 81195210 + 30506299 30506450 SVA_A 1864 + 1008 1155 50564 8 8 5 122 1 0 12 chain 11364 chr17 81195210 + 30506815 30506969 SVA_A 1864 + 812 960 58450 28 2 0 46 7 6 50 8 5 13 chain 22805 chr17 81195210 + 30532073 30532391 L1PA8 5853 - 0 349 116555 19 0 36 10 1 6 22 1 0 16 1 0 56 1 0 9 2 1 53 2 0 17 2 0 44 1 0 46 1 0 14 chain 18887 chr17 81195210 + 30558634 30558881 AluSc8 310 + 13 268 130401 119 0 3 94 15 20 19 chain 25491 chr17 81195210 + 30584793 30585120 AluSp 311 + 1 310 102268 216 16 0 36 2 0 57 chain 12870 chr17 81195210 + 30620022 30620245 L1MB3 1562 + 1271 1466 148752 18 2 0 62 1 0 70 1 0 4 38 13 22 0 1 5 chain 24434 chr17 81195210 + 30620875 30621164 AluSp 311 + 11 299 107887 114 1 0 174 chain 23654 chr17 81195210 + 30637456 30637738 AluSx4 309 + 5 288 112288 274 0 1 8 chain 22186 chr17 81195210 + 30654417 30654672 AluSp 311 - 47 302 119419 255 chain 22297 chr17 81195210 + 30676348 30676616 AluSz 310 + 30 299 118921 83 0 1 185 chain 23399 chr17 81195210 + 30717313 30717594 AluSg7 307 - 14 295 113655 141 0 3 7 3 0 130 chain 9584 chr17 81195210 + 30719102 30719364 AluSc5 308 - 34 156 162676 107 140 0 15 chain 10217 chr17 81195210 + 30745005 30745170 L1PA16 3655 - 77 234 159530 14 0 1 66 25 16 60 chain 24482 chr17 81195210 + 30760272 30760562 AluSp 311 + 2 292 107642 290 chain 4881 chr17 81195210 + 30763849 30763908 MER41D 557 + 1 60 196478 59 chain 23739 chr17 81195210 + 30766961 30767249 AluY 311 + 10 299 111834 122 0 1 166 chain 24329 chr17 81195210 + 30769669 30769996 MER1B 344 + 2 337 108495 14 1 2 137 0 1 115 5 11 55 chain 4616 chr17 81195210 + 30790393 30790472 HY1 111 - 0 79 199441 12 1 0 31 11 12 24 chain 4517 chr17 81195210 + 30835243 30835299 MLT1A 405 + 319 374 200595 18 1 0 37 chain 2743 chr17 81195210 + 30866981 30867059 L1MB8 1703 + 720 799 229563 27 28 31 5 2 0 16 chain 25050 chr17 81195210 + 30900864 30901169 AluYf5 307 - 11 307 104547 10 7 0 22 6 4 260 chain 63175 chr17 81195210 + 30925919 30928698 Tigger1 2417 - 199 1417 51369 9 0 1 729 1947 378 39 0 8 9 1 0 45 chain 3732 chr17 81195210 + 30943827 30943872 MLT1G 592 + 141 186 211429 45 chain 38981 chr17 81195210 + 30967350 30967774 L1PA3long 6157 - 5 429 70766 424 chain 454688 chr17 81195210 + 30967967 30973149 L1PA5 6144 - 12 5231 8591 488 3 5 341 1 4 235 0 1 604 0 3 106 0 4 231 0 2 585 2 1 32 0 4 353 0 5 336 1 3 538 11 13 504 1 11 810 chain 2493 chr17 81195210 + 30977418 30977465 L1MEc 1507 - 456 503 233192 25 1 0 5 3 4 13 chain 554218 chr17 81195210 + 31005275 31011290 L1PA2 6032 - 0 6032 922 2484 0 10 875 0 1 1073 0 3 763 1 0 328 0 3 227 0 1 264 chain 28632 chr17 81195210 + 31021451 31021752 AluYb8 318 + 14 315 90597 301 chain 22509 chr17 81195210 + 31032723 31033088 THE1B 368 + 0 368 117992 82 2 1 28 0 3 6 2 0 49 31 23 13 27 38 125 chain 47510 chr17 81195210 + 31041569 31042263 L1PA11 4918 + 3900 4578 60836 262 0 1 4 0 10 151 9 0 67 1 0 6 4 6 68 2 0 14 1 0 19 4 0 9 35 26 11 1 0 13 2 0 11 chain 36769 chr17 81195210 + 31066255 31066668 L1PA5 6144 + 5728 6142 73847 273 0 1 140 chain 8432 chr17 81195210 + 31099937 31100047 LTR7B 505 + 0 133 168675 22 0 23 88 chain 82689 chr17 81195210 + 31100047 31101259 HERVH-int 3825 + 2 1443 42466 331 1 0 63 130 374 8 1 0 393 1 4 30 0 8 16 15 0 202 9 0 12 chain 93152 chr17 81195210 + 31114989 31116420 L1PB2 3958 - 120 1862 38613 63 2 1 25 21 17 43 45 72 38 1 0 5 36 301 63 1 6 72 1 2 80 0 12 75 1 19 20 8 11 204 0 1 179 0 3 40 19 2 7 0 2 141 16 13 225 chain 26353 chr17 81195210 + 31122645 31123025 MER48 407 + 0 405 98600 30 0 1 4 1 0 43 12 4 13 0 13 37 16 36 224 chain 57515 chr17 81195210 + 31148881 31150004 L1PA5 6144 + 5473 6138 54228 538 468 10 117 chain 7459 chr17 81195210 + 31157240 31157347 HY1 111 - 2 111 174402 58 8 10 41 chain 70297 chr17 81195210 + 31176072 31176840 L1PA2 6032 + 5258 6028 48266 538 0 2 230 chain 28757 chr17 81195210 + 31199708 31200013 AluYb8 318 - 13 318 90083 305 chain 3171 chr17 81195210 + 31202459 31202502 MIR 256 - 125 168 221532 8 0 1 4 1 0 30 chain 559632 chr17 81195210 + 31214155 31220182 L1PA2 6032 + 3 6031 379 482 0 1 5545 chain 172032 chr17 81195210 + 31225580 31228671 MER4-int 2692 - 0 2530 21813 46 3 5 151 0 4 183 26 33 249 0 2 200 23 15 112 1 0 234 2 0 24 4 1 44 43 72 116 0 1 25 0 2 8 17 18 64 0 3 122 4 5 27 45 15 4 0 1 101 0 23 126 315 22 38 307 0 34 0 9 65 1 3 5 2 0 84 2 1 78 1 0 155 chain 3562 chr17 81195210 + 31232480 31232519 MER4A1 472 - 0 39 214293 39 chain 5902 chr17 81195210 + 31244314 31244421 MER51A 677 + 181 282 186174 18 10 0 31 7 11 41 chain 139274 chr17 81195210 + 31248636 31250828 SVA_E 1901 - 338 1901 26254 584 6 13 39 4 0 110 671 0 258 0 40 374 1 0 145 chain 32332 chr17 81195210 + 31249531 31249975 SVA_F 1814 - 540 1126 80298 61 49 0 36 0 1 211 6 27 34 0 49 28 2 122 17 chain 10927 chr17 81195210 + 31251293 31251789 MER51-int 1546 + 32 924 156500 20 56 49 17 0 1 29 2 1 37 6 0 8 6 0 12 62 471 64 160 166 17 chain 48968 chr17 81195210 + 31277435 31277978 L1PA5 6144 - 1 543 59774 477 1 0 65 chain 24235 chr17 81195210 + 31280128 31280539 MER57A1 433 - 9 433 109025 131 5 32 15 20 0 21 0 1 9 53 58 157 chain 36157 chr17 81195210 + 31291067 31291528 LTR71A 459 + 0 459 74702 189 1 0 5 12 13 241 2 0 11 chain 28976 chr17 81195210 + 31292561 31292882 L1PA5 6144 - 3893 4214 88269 321 chain 343792 chr17 81195210 + 31292882 31296772 L1PA5 6144 + 2254 6131 11786 55 7 0 5 2 0 959 7 6 1349 1 0 940 0 2 420 2 0 11 3 1 129 chain 37583 chr17 81195210 + 31300888 31301351 LTR71A 459 + 0 459 72707 133 1 0 69 2 1 242 2 0 14 chain 72499 chr17 81195210 + 31304046 31304827 L1PA2 6032 + 5245 6026 47266 781 chain 118597 chr17 81195210 + 31307903 31309493 THE1B-int 1605 - 5 1605 31583 82 0 1 125 0 2 207 0 2 7 3 1 716 0 64 22 9 10 154 10 6 86 54 0 115 chain 21907 chr17 81195210 + 31309901 31310237 THE1B 368 - 29 368 120598 26 8 7 56 9 8 10 1 0 18 17 24 21 1 0 169 chain 9840 chr17 81195210 + 31313981 31314097 THE1D 372 + 256 372 161395 116 chain 3507 chr17 81195210 + 31382571 31382610 AluJr4 308 - 46 85 215250 39 chain 495474 chr17 81195210 + 31386185 31391824 L1PA5 6144 - 7 6141 7102 252 1 0 598 1 0 441 7 8 1289 0 1 1290 2 0 7 4 7 668 0 2 721 33 0 237 0 525 88 chain 7560 chr17 81195210 + 31418895 31418992 MER3 215 + 97 194 173805 97 chain 27412 chr17 81195210 + 31432569 31432980 THE1B-int 1605 + 35 393 94928 121 53 0 146 1 0 4 1 2 85 chain 28835 chr17 81195210 + 31453874 31454186 AluYb8 318 - 8 318 89748 184 2 0 126 chain 24523 chr17 81195210 + 31477605 31477890 AluYa5 310 + 20 304 107425 32 0 1 11 2 0 240 chain 98419 chr17 81195210 + 31513032 31514582 HSMAR1 1287 + 0 1263 37187 57 1 0 32 306 0 40 1 3 261 0 20 144 2 1 179 0 1 434 2 0 91 chain 26736 chr17 81195210 + 31542723 31543016 AluYf4 310 - 16 310 97200 90 0 1 203 chain 3683 chr17 81195210 + 31562756 31562799 MLT1C-int 1263 + 1079 1122 212191 43 chain 4166 chr17 81195210 + 31570937 31570984 MIR3 191 + 70 117 205010 47 chain 60384 chr17 81195210 + 31625145 31625829 L1PA5 6144 - 10 712 52640 158 0 18 526 chain 42978 chr17 81195210 + 31697832 31698373 MER41C 542 - 0 542 65437 35 0 6 210 5 0 291 chain 26357 chr17 81195210 + 31745782 31746131 L1PA7 6471 + 6122 6468 98585 154 2 1 31 1 2 87 0 2 5 2 0 52 3 0 12 chain 28766 chr17 81195210 + 31770424 31770733 AluYa5 310 - 4 310 90040 180 3 0 126 chain 20567 chr17 81195210 + 31772590 31772834 AluSp 311 + 57 301 125403 244 chain 4759 chr17 81195210 + 31774804 31774898 L1MA4 2864 + 2746 2830 197814 17 1 0 3 1 0 43 16 8 13 chain 4647 chr17 81195210 + 31787772 31787861 MIR 256 - 119 209 199086 44 22 23 23 chain 6956 chr17 81195210 + 31793122 31793218 L1P1 4361 + 4247 4341 177770 58 1 0 23 2 1 12 chain 39934 chr17 81195210 + 31794391 31794969 MER4B 649 + 0 619 69419 118 9 8 31 5 47 57 2 0 105 8 3 22 0 1 27 5 0 7 1 0 63 0 11 62 1 0 7 0 1 9 0 1 39 chain 42999 chr17 81195210 + 31814568 31815101 MLT2A2 560 + 0 560 65413 107 3 4 84 0 3 5 0 1 189 1 0 78 0 23 66 chain 3438 chr17 81195210 + 31822182 31822218 MER96 175 - 103 139 216435 36 chain 16573 chr17 81195210 + 31844680 31844862 L1PA4 6152 + 5953 6135 136727 182 chain 71249 chr17 81195210 + 31869160 31869926 L1PA2 6032 - 397 1163 47831 766 chain 36083 chr17 81195210 + 31869926 31870318 L1PA2 6032 + 5640 6032 74781 392 chain 10809 chr17 81195210 + 31885117 31885242 LTR13 1007 - 0 125 156946 125 chain 42725 chr17 81195210 + 31891670 31892168 MER9a1 513 + 0 513 65744 184 0 1 90 0 1 169 0 13 55 chain 3436 chr17 81195210 + 31927200 31927241 MSTD 398 + 8 49 216456 41 chain 8930 chr17 81195210 + 31927616 31927742 MER85 139 - 0 135 165980 29 2 1 10 0 10 85 chain 10709 chr17 81195210 + 31944162 31944389 L1PA15 4387 + 4142 4366 157378 38 6 5 19 5 1 12 1 0 12 1 2 36 5 15 32 3 1 11 11 6 25 1 0 9 chain 7573 chr17 81195210 + 32003921 32004162 MSTA 426 + 133 414 173710 47 129 169 65 chain 9503 chr17 81195210 + 32023632 32023891 Tigger2a 444 - 0 280 163060 20 113 133 56 4 5 66 chain 29481 chr17 81195210 + 32039655 32039963 AluYa5 310 - 2 310 86712 308 chain 19944 chr17 81195210 + 32050973 32051337 THE1B 368 + 0 366 127321 169 1 0 4 68 72 61 23 22 38 chain 26358 chr17 81195210 + 32081698 32082001 AluY 311 + 5 307 98581 128 1 0 174 chain 3652 chr17 81195210 + 32084969 32085014 Zaphod 902 + 295 340 212778 45 chain 83923 chr17 81195210 + 32114962 32116033 L1PA8A 6298 + 5212 6291 41942 201 0 1 33 1 0 42 11 16 63 0 2 74 0 1 230 23 25 284 9 7 100 chain 37737 chr17 81195210 + 32154740 32155223 L1PA8 5853 - 0 478 72503 93 1 0 18 7 6 57 2 1 70 2 0 44 1 0 135 0 1 53 chain 16581 chr17 81195210 + 32157579 32157818 L1PA8 5853 - 0 235 136710 92 2 1 18 6 5 47 1 0 8 1 0 64 chain 13054 chr17 81195210 + 32192638 32192780 L1HS 6032 + 5890 6032 148015 142 chain 540476 chr17 81195210 + 32204154 32210268 L1PA4 6152 + 0 6146 2738 29 0 3 383 0 10 811 0 1 1080 0 3 889 1 0 384 8 5 1005 0 2 919 0 2 445 0 15 160 chain 5116 chr17 81195210 + 32215085 32215152 Tigger5 388 + 303 369 193911 53 1 0 13 chain 43402 chr17 81195210 + 32286351 32286894 MLT2A2 560 - 1 558 64935 146 0 11 204 1 4 192 chain 21888 chr17 81195210 + 32315312 32315589 THE1B 368 + 83 368 120672 119 2 0 89 1 0 36 0 11 30 chain 5723 chr17 81195210 + 32336419 32336659 MER33 330 + 130 330 187897 8 46 0 20 7 6 48 84 91 27 chain 7015 chr17 81195210 + 32348072 32348239 L1PB1 5432 + 5266 5412 177361 14 2 1 15 1 0 6 18 7 17 11 8 12 2 0 24 1 0 21 1 0 13 1 0 8 chain 18695 chr17 81195210 + 32349854 32350170 MSTA 426 + 27 400 130961 73 8 47 58 3 1 8 3 5 14 12 10 44 10 30 83 chain 537559 chr17 81195210 + 32357396 32363551 L1PA4 6152 + 8 6151 3224 452 6 0 120 1 0 1935 1 0 684 4 5 237 0 3 1258 0 3 231 22 0 698 3 14 503 chain 407754 chr17 81195210 + 32387082 32392519 L1PB1 5432 + 19 5424 9857 27 9 10 347 1 0 470 1 2 520 1 0 7 2 0 5 26 11 550 0 3 304 2 1 100 0 4 119 3 1 41 5 6 240 8 9 44 9 8 415 0 1 463 9 5 226 6 5 488 1 3 37 7 4 121 8 5 357 0 3 122 3 2 9 1 0 20 1 0 13 20 15 5 2 0 53 2 1 16 1 0 26 6 24 9 11 0 9 5 4 18 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 552718 chr17 81195210 + 32410043 32416194 L1PA3long 6157 - 0 6145 1107 592 0 1 620 22 0 235 0 3 342 0 4 415 0 1 677 1 0 4 0 1 2217 1 0 330 0 7 276 0 1 419 chain 24498 chr17 81195210 + 32423613 32423904 AluY 311 + 22 311 107547 101 2 0 188 chain 36344 chr17 81195210 + 32459211 32459744 LTR12F 595 - 0 595 74440 175 10 10 22 21 1 56 19 6 106 0 82 19 5 18 100 chain 4381 chr17 81195210 + 32462570 32462621 MER5B 177 - 124 175 202183 51 chain 27512 chr17 81195210 + 32476768 32477198 L1MA8 2339 + 1653 2073 94622 94 1 0 84 0 1 8 4 0 47 0 1 9 32 29 28 3 0 51 7 6 62 chain 29470 chr17 81195210 + 32510209 32510642 LTR7Y 441 + 0 441 86752 103 9 0 57 68 84 127 1 2 68 chain 293811 chr17 81195210 + 32510642 32514332 HERVH-int 3825 + 0 3825 13778 212 0 11 309 69 0 38 1 0 9 2 1 24 28 0 14 14 31 7 1 0 64 21 0 9 2 1 49 1 0 444 15 0 231 0 2 128 1 0 97 8 35 1354 9 11 39 8 218 254 3 8 225 chain 3598 chr17 81195210 + 32511192 32511232 HERVH-int 3825 + 436 476 197738 40 chain 27792 chr17 81195210 + 32515592 32516013 LTR7Y 441 + 0 441 93725 98 16 7 55 68 84 98 0 13 86 chain 12165 chr17 81195210 + 32518199 32518335 L1PA5 6144 + 6005 6141 151553 136 chain 520759 chr17 81195210 + 32536769 32542883 L1PA5 6144 - 0 6142 5076 147 1 2 183 1 2 345 1 0 173 1 0 16 1 5 333 0 1 452 1 4 805 0 1 122 0 1 1238 0 1 4 1 0 482 0 1 656 9 0 50 3 2 4 0 1 935 7 19 10 0 14 133 chain 78775 chr17 81195210 + 32543850 32544815 L1PA7 6471 - 5 970 44159 7 4 0 506 0 3 245 6 7 28 0 1 47 4 3 118 chain 28685 chr17 81195210 + 32556754 32557135 L1PA15 4387 + 2807 3186 90386 11 0 2 130 2 0 227 2 0 9 chain 8850 chr17 81195210 + 32594024 32594168 L1MB1 2102 - 123 265 166372 39 8 6 4 0 1 48 7 6 38 chain 15155 chr17 81195210 + 32602313 32602493 L1PA6 6164 - 5 185 140894 180 chain 465735 chr17 81195210 + 32604469 32610199 L1PA7 6471 + 715 6467 8197 30 9 14 400 1 2 50 0 1 547 2 0 151 0 1 35 1 0 89 1 0 21 2 0 331 3 33 99 0 3 115 23 0 669 0 4 219 1 0 677 2 0 591 12 14 326 0 1 485 1 5 237 3 0 100 0 5 41 1 0 38 1 2 416 chain 554408 chr17 81195210 + 32619469 32625471 L1PA2 6032 - 0 6011 896 3201 0 7 1512 1 0 817 0 3 471 chain 37357 chr17 81195210 + 32630834 32631285 MER9B 498 - 30 485 73021 59 0 1 196 0 3 196 chain 191479 chr17 81195210 + 32650143 32652619 L1PBa 3878 - 1196 3644 19915 115 10 4 75 0 3 8 3 0 417 0 4 76 1 3 219 0 4 34 0 1 4 1 0 97 1 4 166 0 2 339 38 0 120 2 3 462 1 0 52 13 14 222 chain 29683 chr17 81195210 + 32654850 32655185 L1PA7 6471 + 6122 6457 85891 335 chain 8819 chr17 81195210 + 32658495 32658594 SVA_E 1901 - 1 100 166561 99 chain 227135 chr17 81195210 + 32661438 32664645 L1PA8 5853 - 0 2862 17481 92 2 1 12 9 8 63 0 1 6 4 3 58 3 1 44 1 0 49 1 0 428 7 4 79 0 6 511 2 1 326 0 3 27 8 0 136 0 2 896 338 0 105 chain 8873 chr17 81195210 + 32673475 32673571 L1PA4 6152 + 6044 6140 166267 96 chain 20189 chr17 81195210 + 32708407 32708681 L1PA8 5853 + 5575 5853 126564 34 2 0 73 0 3 8 1 8 9 2 0 34 2 1 15 1 0 93 chain 11595 chr17 81195210 + 32709145 32709418 AluSq4 311 - 20 169 153915 124 124 0 25 chain 21611 chr17 81195210 + 32736785 32737144 L1PA14 3548 + 3121 3465 121734 10 2 0 6 1 0 11 0 1 72 1 0 111 1 0 10 5 1 19 19 17 11 1 0 8 1 0 19 1 0 39 1 0 4 1 0 5 chain 26844 chr17 81195210 + 32750386 32750672 L1PA4 6152 - 185 471 96824 286 chain 14123 chr17 81195210 + 32750672 32750833 L1PA4 6152 + 5982 6143 144128 161 chain 9617 chr17 81195210 + 32759159 32759318 MLT1A0 366 + 37 200 162501 20 2 3 79 8 7 8 0 2 8 6 8 28 chain 16701 chr17 81195210 + 32798274 32798618 THE1D 372 - 20 372 136402 114 38 0 9 19 72 63 49 40 37 0 2 15 chain 4208 chr17 81195210 + 32836090 32836146 L1MC5 759 + 237 292 204443 30 1 0 25 chain 10243 chr17 81195210 + 32901962 32902091 MER85 139 + 0 139 159404 90 0 10 39 chain 28129 chr17 81195210 + 32987839 32988148 L1PA2 6032 - 0 309 92542 309 chain 36361 chr17 81195210 + 33004322 33004739 L1PA7 6471 - 13 429 74421 149 1 0 267 chain 20757 chr17 81195210 + 33004739 33004991 L1PA7 6471 + 5790 6040 124769 68 3 0 139 1 2 41 chain 29750 chr17 81195210 + 33015536 33015848 AluYb8 318 + 0 312 85651 312 chain 13049 chr17 81195210 + 33035210 33035542 L1PA11 4918 - 289 587 148035 18 137 107 16 1 0 15 2 0 66 2 0 13 2 1 24 0 2 36 chain 49853 chr17 81195210 + 33071889 33072457 L1PA4 6152 - 0 563 59117 6 4 0 183 0 1 94 1 0 119 1 0 160 chain 7612 chr17 81195210 + 33136183 33136325 MSTA 426 + 252 402 173459 21 39 47 82 chain 37040 chr17 81195210 + 33227800 33228382 MER41A 554 + 0 546 73471 59 7 0 45 1 2 123 29 31 77 0 1 47 59 26 135 chain 15901 chr17 81195210 + 33231310 33231508 MER47A 366 + 104 302 138656 198 chain 58764 chr17 81195210 + 33234644 33235299 SVA_D 2077 + 1413 2071 53546 31 0 1 9 0 1 4 0 4 6 3 0 602 chain 132414 chr17 81195210 + 33246151 33247721 THE1A-int 1579 + 0 1569 27540 931 3 2 160 0 1 468 1 0 7 chain 16678 chr17 81195210 + 33270595 33270785 L1PA4 6152 + 5952 6143 136465 4 0 1 186 chain 8164 chr17 81195210 + 33275088 33275250 L1PB1 5432 - 10 151 170147 18 1 0 13 1 0 21 1 0 24 2 0 13 10 7 15 9 0 15 5 1 14 chain 70376 chr17 81195210 + 33356717 33357486 L1PA3long 6157 - 5 776 48225 762 0 2 7 chain 2704 chr17 81195210 + 33398867 33398930 L1MD2 1676 + 1332 1395 230192 19 4 5 18 7 6 15 chain 7899 chr17 81195210 + 33404779 33404877 MER30 238 + 141 236 171657 58 3 0 37 chain 21085 chr17 81195210 + 33438130 33438387 AluSp 311 + 15 296 123594 117 3 0 28 0 27 109 chain 11736 chr17 81195210 + 33445134 33445310 MER20 218 + 6 176 153319 76 9 7 69 4 0 18 chain 35943 chr17 81195210 + 33455678 33456159 MER1A 529 - 9 494 74966 53 1 0 4 2 5 235 8 10 178 chain 14930 chr17 81195210 + 33470940 33471149 MER30 238 + 0 231 141540 104 7 23 26 1 7 71 chain 6067 chr17 81195210 + 33480211 33480295 MER96B 391 - 212 294 184690 49 3 1 32 chain 98559 chr17 81195210 + 33505238 33506370 L1PA6 6164 - 675 1795 37136 167 0 4 586 16 0 363 chain 48088 chr17 81195210 + 33506370 33506929 L1PA6 6164 + 5605 6162 60211 398 0 1 43 1 0 41 4 0 63 0 2 9 chain 129504 chr17 81195210 + 33521496 33523023 SVA_C 1631 - 0 1582 28205 629 1 0 77 0 1 6 16 63 178 0 37 86 40 0 392 0 11 102 chain 539051 chr17 81195210 + 33524752 33531976 L1PA4 6152 - 15 6152 2983 115 0 2 929 1 2 435 1079 0 176 18 1 585 0 2 461 0 1 1100 0 1 1770 2 3 308 0 1 245 chain 83136 chr17 81195210 + 33526238 33527288 MER11C 1089 + 0 1063 42280 55 5 8 92 1 0 95 1 2 65 1 5 210 24 25 131 0 4 7 1 0 38 0 1 127 0 1 197 chain 3581 chr17 81195210 + 33544597 33544637 MER65C 458 + 413 453 213969 40 chain 80182 chr17 81195210 + 33561221 33562182 L1PA7 6471 - 13 979 43513 397 0 1 127 1 2 229 0 2 72 5 6 130 chain 516517 chr17 81195210 + 33601389 33608655 L1PA4 6152 + 0 6143 5528 124 20 6 12 11 25 414 1 2 869 1 2 40 0 35 358 1 0 100 0 136 1048 3 1 807 1307 4 368 0 4 501 0 2 903 0 5 373 1 0 4 chain 106075 chr17 81195210 + 33605198 33606497 LTR12C 1709 - 0 1709 35237 193 1 0 288 0 4 91 0 366 36 0 41 110 4 3 270 39 40 267 chain 22013 chr17 81195210 + 33613949 33614530 L1PB1 5432 - 10 393 120169 18 1 0 13 1 0 21 1 0 24 2 0 15 7 4 11 0 1 18 15 1 15 1 0 45 1 0 9 8 7 50 3 1 10 2 0 3 2 0 10 1 0 12 1 0 22 8 0 9 158 0 64 chain 25211 chr17 81195210 + 33623605 33623954 THE1A 353 + 0 353 103684 113 1 0 119 8 9 38 1 4 4 0 1 65 chain 56694 chr17 81195210 + 33623954 33624655 THE1A-int 1579 + 0 710 54724 20 0 2 382 0 7 299 chain 517888 chr17 81195210 + 33627874 33637353 L1PA7 6471 + 3 6463 5388 407 0 2 22 11 12 69 1 0 163 20 21 154 1 0 1136 0 1 36 4 5 284 1 2 106 2 1 209 1 0 775 3139 101 781 12 13 146 0 1 239 1 3 111 0 2 259 2 1 4 0 1 120 1 2 322 0 1 108 0 5 75 1 0 12 1 4 524 0 1 219 chain 50041 chr17 81195210 + 33633715 33634405 LTR30 714 + 0 704 58992 249 0 5 189 7 18 158 2 0 10 33 34 29 1 0 12 chain 12714 chr17 81195210 + 33637396 33637553 L1M1 2793 + 2445 2602 149403 157 chain 14667 chr17 81195210 + 33643509 33643713 L1PB1 5432 - 604 801 142368 13 1 3 36 9 0 68 1 0 19 0 1 57 chain 32849 chr17 81195210 + 33644960 33645551 L1PB 1623 - 111 676 79458 7 3 0 3 1 0 15 3 0 3 1 0 30 2 1 7 1 0 10 4 3 124 9 0 61 24 34 57 6 7 102 41 24 77 chain 10059 chr17 81195210 + 33646828 33646988 L1M1 2793 - 1800 1959 160276 48 1 2 42 1 0 5 5 3 19 0 2 33 1 0 5 chain 32664 chr17 81195210 + 33651560 33652002 LOR1b 457 + 0 457 79742 27 5 15 101 4 0 36 5 14 264 chain 5305 chr17 81195210 + 33652538 33652600 L1PB 1623 + 932 994 191964 62 chain 109668 chr17 81195210 + 33653469 33654927 L1PBa 3878 - 481 1956 34177 139 1 0 36 2 0 165 2 1 64 8 7 4 0 1 179 0 5 88 0 3 42 6 5 67 0 4 193 0 10 109 0 1 351 1 0 1 chain 527280 chr17 81195210 + 33654927 33661403 L1PA7 6471 - 1 6471 4470 135 0 1 131 0 2 69 0 1 63 0 1 344 1 0 102 1 0 553 2 1 502 4 5 9 1 0 77 0 4 58 0 2 581 6 2 228 0 3 110 2 1 85 19 0 482 5 6 272 12 0 118 0 2 569 0 4 383 4 3 247 8 24 299 13 4 117 0 2 225 0 1 237 1 3 179 0 1 222 chain 70865 chr17 81195210 + 33668397 33669270 MER11D 897 + 0 897 47977 575 5 28 70 0 1 223 chain 2910 chr17 81195210 + 33674411 33674446 LTR43 600 + 0 35 226865 35 chain 133618 chr17 81195210 + 33696608 33698686 L1MA1 4479 + 2123 4190 27295 33 0 1 8 4 0 10 0 1 131 0 4 106 0 1 91 1 2 53 0 2 13 0 4 23 15 40 21 2 1 103 2 0 33 1 0 154 1 0 27 2 0 38 0 6 107 2 1 15 9 7 16 4 0 76 1 0 12 1 0 114 0 4 6 20 11 121 2 0 143 1 0 52 1 0 25 2 0 16 1 0 56 95 91 45 1 0 4 4 1 126 1 0 24 11 9 26 25 19 16 7 0 18 chain 398744 chr17 81195210 + 33705110 33711665 L1PB1 5432 - 8 5376 10147 4 1 0 16 1 0 13 1 0 21 1 0 16 68 52 6 2 0 15 1 0 44 1 0 16 2 1 53 2 0 9 16 11 25 110 19 122 0 3 174 1 0 7 0 1 56 0 1 741 8 6 34 1 0 226 36 6 16 1 0 176 0 4 424 620 0 162 0 1 113 3 0 151 463 0 91 0 2 88 1 2 117 0 4 13 0 30 656 0 4 223 17 19 12 14 10 13 1 0 227 0 1 631 10 15 53 11 2 8 0 2 49 0 1 4 7 6 302 6 16 22 chain 39508 chr17 81195210 + 33708630 33709089 LTR2 463 + 0 463 70011 130 0 4 329 chain 41236 chr17 81195210 + 33714057 33714773 L1PREC2 3366 - 2536 3217 67603 26 9 6 145 0 1 186 13 0 8 5 15 38 1 0 50 45 40 23 2 1 33 4 2 11 1 0 13 2 1 5 10 0 17 1 0 7 7 2 20 2 0 10 1 0 21 chain 7788 chr17 81195210 + 33720857 33720967 LTR46 455 - 0 111 172365 42 9 10 59 chain 540325 chr17 81195210 + 33720974 33726964 L1PA3long 6157 + 4 6149 2768 58 0 11 79 0 1 107 0 1 481 1 0 25 9 137 507 0 9 1289 0 5 3131 0 1 303 chain 39041 chr17 81195210 + 33730813 33731272 LTR2 463 - 0 463 70676 135 0 1 263 0 3 61 chain 110307 chr17 81195210 + 33741615 33743160 L1PB2 3958 + 2298 3838 34124 107 0 3 73 1 0 178 0 3 239 52 49 8 0 2 303 0 4 40 2 0 56 1 0 14 6 1 61 2 0 12 1 0 4 1 0 52 0 2 108 1 0 64 1 0 93 2 1 63 chain 70660 chr17 81195210 + 33757263 33758267 MER57-int 2662 - 162 1835 48081 18 1 0 40 8 22 34 0 6 41 3 2 5 2 0 245 12 9 164 6 4 74 0 7 57 22 644 86 0 29 6 1 0 41 0 1 138 chain 3938 chr17 81195210 + 33763522 33763721 L1MC4 1079 + 536 735 208295 14 25 26 19 102 101 39 chain 32101 chr17 81195210 + 33780474 33780915 MLT2A1 477 + 0 477 80689 142 0 1 7 19 23 209 6 38 38 1 0 19 chain 209796 chr17 81195210 + 33780915 33783507 HERVL-int 5654 + 0 5646 18504 34 0 1 207 6 8 228 0 3 167 15 19 178 0 1 221 9 3051 261 1 2 588 0 3 246 3 0 95 0 2 119 0 1 181 3 0 30 chain 18646 chr17 81195210 + 33783515 33783747 MLT2A1 477 + 0 237 131098 142 0 1 25 1 5 64 chain 153628 chr17 81195210 + 33783960 33785945 L1PA10 4194 - 1774 3764 24141 136 6 5 53 0 4 460 1 0 62 5 7 44 0 2 237 1 0 122 0 1 157 1 0 239 6 5 121 0 3 272 12 10 50 chain 99453 chr17 81195210 + 33799684 33800957 L1PA10 4194 - 90 1390 36914 10 0 20 459 0 1 393 11 10 82 13 12 52 9 7 5 0 2 103 0 8 136 chain 13322 chr17 81195210 + 33801659 33801858 AluSg7 307 + 1 189 147000 44 18 14 67 7 0 63 chain 24809 chr17 81195210 + 33814948 33815236 AluY 311 + 3 291 105838 288 chain 10336 chr17 81195210 + 33827318 33827466 LTR2 463 + 0 152 158955 36 0 1 66 0 19 6 16 0 24 chain 407099 chr17 81195210 + 33829848 33834926 Harlequin-int 5206 + 133 5206 9874 15 0 1 145 2 1 6 16 0 81 0 1 68 4 3 30 0 1 24 18 19 154 1 0 162 0 1 26 1 0 97 5 0 135 0 1 424 1 0 36 10 10 151 0 1 257 0 1 4 2 1 550 1 2 4 1 0 14 4 0 5 0 3 45 69 72 76 22 30 200 0 3 272 0 3 212 5 1 231 1 2 1135 0 1 356 chain 37715 chr17 81195210 + 33834926 33835384 LTR2 463 + 0 463 72532 56 0 1 72 0 3 249 0 1 81 chain 147694 chr17 81195210 + 33844245 33846369 L1PA8 5853 + 4019 5848 24922 140 0 3 418 0 1 96 0 1 129 0 3 131 0 1 68 2 0 50 306 0 22 0 2 402 6 16 62 1 0 46 2 0 68 2 1 9 1 0 6 1 0 46 3 2 18 2 1 87 chain 4533 chr17 81195210 + 33848945 33849002 L1PA4 6152 + 5949 6004 200423 29 2 0 26 chain 12373 chr17 81195210 + 33849003 33849140 L1PA4 6152 + 6006 6143 150741 137 chain 469227 chr17 81195210 + 33851267 33856872 L1PA7 6471 + 824 6469 8062 122 0 1 305 13 32 751 1 0 353 0 2 8 0 1 123 1 0 102 0 1 10 1 2 969 1 0 403 1 0 8 4 14 16 2 1 526 1 0 100 0 4 303 6 12 183 0 2 443 1 0 48 1 0 476 6 7 317 chain 17597 chr17 81195210 + 33857156 33857373 AluSc 308 + 72 288 134004 59 1 0 157 chain 28932 chr17 81195210 + 33879286 33879612 LTR17 781 + 0 326 89312 326 chain 19923 chr17 81195210 + 33907289 33907532 AluSp 311 + 18 259 127388 114 2 0 127 chain 7629 chr17 81195210 + 33929504 33929785 MER33 330 - 33 322 173356 4 0 1 33 84 88 43 1 0 18 69 73 29 chain 11976 chr17 81195210 + 33955069 33955295 MER2 342 + 87 327 152301 29 19 27 74 15 20 58 11 12 20 chain 10948 chr17 81195210 + 33970097 33970291 MER30 238 - 0 238 156412 40 11 4 36 0 6 26 4 19 47 15 45 15 chain 22011 chr17 81195210 + 34057213 34057500 AluSc 308 + 11 296 120175 42 13 11 232 chain 3540 chr17 81195210 + 34077877 34077944 MIRb 242 + 101 170 214699 35 15 17 17 chain 24723 chr17 81195210 + 34089011 34089308 AluSp 311 - 14 311 106304 297 chain 3768 chr17 81195210 + 34103519 34103562 MER53 195 - 128 171 210833 43 chain 2915 chr17 81195210 + 34126334 34126367 MIR 256 - 121 154 226776 33 chain 25494 chr17 81195210 + 34130776 34131078 AluYk4 311 + 0 309 102253 123 7 3 20 0 11 152 chain 23169 chr17 81195210 + 34132401 34132682 AluSp 311 - 15 296 114818 281 chain 22829 chr17 81195210 + 34170139 34170416 AluSp 311 - 24 300 116447 185 1 0 91 chain 3175 chr17 81195210 + 34180408 34180445 Tigger4a 237 - 0 37 221436 37 chain 3212 chr17 81195210 + 34195084 34195124 MER5A 189 - 113 163 220707 22 0 10 18 chain 12672 chr17 81195210 + 34213744 34213931 MER44A 345 + 121 312 149566 53 0 4 57 0 5 15 10 0 9 3 8 40 chain 441 chr17 81195210 + 34215193 34215252 7SK 245 + 0 59 154580 59 chain 24551 chr17 81195210 + 34215252 34215738 LTR35A 463 - 0 418 107249 142 5 2 6 2 0 25 5 2 14 1 0 15 1 0 16 6 2 20 1 0 10 2 0 35 5 4 40 17 3 11 10 0 26 42 17 7 1 0 21 chain 777 chr17 81195210 + 34216618 34216722 7SK 245 + 141 245 154580 104 chain 29200 chr17 81195210 + 34221899 34222211 AluYb8 318 - 6 318 88053 312 chain 23696 chr17 81195210 + 34224649 34224949 AluSc 308 + 0 295 112051 78 0 5 160 9 0 14 2 1 37 chain 26083 chr17 81195210 + 34231351 34231718 MER4B 649 + 0 409 99696 111 1 0 19 24 63 172 0 4 40 chain 55092 chr17 81195210 + 34232015 34232755 MER4E1 777 - 0 774 55651 16 4 6 204 7 9 49 2 0 56 0 1 55 0 1 32 0 19 164 8 11 136 0 8 7 chain 4590 chr17 81195210 + 34259219 34259317 LTR25 836 + 496 557 199743 48 37 0 13 chain 3548 chr17 81195210 + 34262601 34262650 LTR25 836 + 59 107 214573 9 2 1 38 chain 3418 chr17 81195210 + 34271247 34271287 MLT1K 546 + 496 536 216795 40 chain 64584 chr17 81195210 + 34279403 34280259 L1PA10 4194 - 2902 3784 50760 135 0 1 270 1 0 129 0 20 253 2 0 20 10 18 36 chain 12366 chr17 81195210 + 34283299 34283584 L1PA15 4387 - 31 295 150770 26 13 3 12 6 4 39 19 16 39 23 20 12 4 3 52 2 1 24 2 1 12 chain 26011 chr17 81195210 + 34287998 34288314 AluY 311 + 0 311 99972 47 9 6 56 1 0 24 1 0 178 chain 25237 chr17 81195210 + 34291765 34292068 AluY 311 + 8 305 103553 118 6 0 179 chain 12238 chr17 81195210 + 34321347 34321498 L1PA16 3655 + 1846 1997 151265 151 chain 17936 chr17 81195210 + 34338472 34338883 HUERS-P2-int 2744 + 2349 2742 133016 91 1 0 4 21 24 64 2 0 12 4 0 10 26 26 12 1 0 5 28 25 31 3 0 13 10 9 14 1 0 8 3 1 5 2 0 12 2 0 19 0 1 7 chain 35569 chr17 81195210 + 34343211 34343688 L1PA8 5853 - 0 475 75453 93 1 0 9 7 11 48 1 0 13 2 1 70 2 0 46 1 0 184 chain 270607 chr17 81195210 + 34346713 34350473 L1P2 5180 - 1126 4819 15158 77 1 2 170 0 12 86 25 17 900 0 4 108 2 7 312 1 2 151 1 0 243 3 29 100 0 2 120 1 0 135 0 4 524 1 0 4 23 24 219 0 15 49 21 0 45 10 11 108 186 97 30 18 0 86 chain 16712 chr17 81195210 + 34350857 34351064 LTR3A 482 - 53 269 136366 67 1 10 139 chain 4915 chr17 81195210 + 34378005 34378066 L1PA17 2846 + 22 82 196116 14 1 0 46 chain 6745 chr17 81195210 + 34434434 34434519 MER3 215 - 59 144 179353 85 chain 325575 chr17 81195210 + 34439232 34443257 HERVL-int 5654 + 0 5654 12365 210 1 0 147 1 3 379 3 5 110 69 0 12 0 5 426 0 1 4 1 0 9 0 1179 52 0 1 459 0 7 491 0 1 87 1 15 173 0 12 574 0 1 297 0 484 6 0 1 63 1 2 5 13 0 213 0 1 82 1 2 135 chain 32076 chr17 81195210 + 34443257 34443737 MLT2A1 477 + 0 477 80727 72 0 2 68 0 1 25 1 5 212 62 53 20 1 0 19 chain 34211 chr17 81195210 + 34446446 34446899 MER1A 529 + 64 520 77335 17 0 4 11 2 0 361 13 14 49 chain 6796 chr17 81195210 + 34447234 34447369 L1PB3 3668 - 143 260 178983 21 6 4 18 24 8 66 chain 85135 chr17 81195210 + 34447939 34449016 L1PA8 5853 + 4779 5853 41469 232 2 0 82 0 1 425 0 3 42 1 0 45 2 0 70 1 0 8 5 4 18 0 2 29 3 2 14 5 4 93 chain 31301 chr17 81195210 + 34449471 34449914 MLT2A1 477 - 0 477 81991 37 35 69 167 0 1 12 0 1 9 1 2 9 4 1 169 chain 73970 chr17 81195210 + 34467437 34468409 LTR5_Hs 974 + 0 974 46531 288 0 1 178 0 1 173 16 15 123 11 7 33 8 15 19 20 18 103 chain 4106 chr17 81195210 + 34486976 34487026 MER41B 635 - 81 131 205858 50 chain 3414 chr17 81195210 + 34544775 34544824 MLT2A1 477 + 200 250 216873 10 1 2 38 chain 392379 chr17 81195210 + 34545130 34549926 HERVL-int 5654 + 0 4753 10382 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 117 chain 12405 chr17 81195210 + 34551563 34551732 MER44A 345 - 26 190 150617 66 1 0 9 4 0 89 chain 22795 chr17 81195210 + 34558797 34559044 L1PA3long 6157 + 5910 6157 116606 247 chain 4106 chr17 81195210 + 34574688 34574738 MER41B 635 - 81 131 205857 50 chain 29628 chr17 81195210 + 34574818 34575130 AluYb8 318 - 6 318 86127 312 chain 3605 chr17 81195210 + 34646340 34646391 MLT2A1 477 + 198 250 213575 12 1 2 38 chain 392379 chr17 81195210 + 34646697 34651493 HERVL-int 5654 + 0 4753 10381 701 0 1 135 0 1 13 24 3 23 48 0 198 0 1 1221 0 3 18 0 1 141 12 4 263 0 3 770 0 1 56 0 1 438 0 6 432 6 5 180 0 17 117 chain 12405 chr17 81195210 + 34653128 34653297 MER44A 345 - 26 190 150616 66 1 0 9 4 0 89 chain 22795 chr17 81195210 + 34660360 34660607 L1PA3long 6157 + 5910 6157 116605 247 chain 4106 chr17 81195210 + 34739721 34739771 MER41B 635 - 81 131 205856 50 chain 29719 chr17 81195210 + 34739851 34740164 AluYb8 318 - 5 318 85767 313 chain 76177 chr17 81195210 + 34767569 34768842 L1PA8 5853 - 0 999 45379 88 9 8 16 2 1 47 1 0 14 1 0 69 2 0 39 0 1 6 1 0 265 272 4 15 0 2 265 0 5 120 10 6 23 3 0 5 chain 28659 chr17 81195210 + 34770830 34771130 AluYa5 310 - 10 310 90489 300 chain 19970 chr17 81195210 + 34777406 34777676 AluSg7 307 - 25 296 127237 128 1 14 7 12 0 122 chain 30285 chr17 81195210 + 34790900 34791215 AluYb8 318 - 3 318 83979 315 chain 3144 chr17 81195210 + 34926887 34926925 U2 167 - 129 167 222074 38 chain 2980 chr17 81195210 + 34939791 34939824 Charlie1 1172 - 272 305 225458 33 chain 2842 chr17 81195210 + 34965352 34965384 MIRc 230 + 146 178 227976 32 chain 23511 chr17 81195210 + 34971819 34972112 AluSp 311 + 3 297 113066 60 0 2 67 1 0 165 chain 5708 chr17 81195210 + 34996227 34996334 MER5A 189 + 0 119 188032 21 1 0 6 0 1 13 13 23 12 3 5 38 chain 42701 chr17 81195210 + 35033921 35034757 MER41A 554 - 21 554 65774 11 0 2 47 0 5 44 310 0 424 chain 7394 chr17 81195210 + 35095040 35095180 L1MA6 2487 + 2141 2273 174807 11 0 2 25 0 6 42 34 18 28 chain 29897 chr17 81195210 + 35132464 35132909 L1PA15 4387 + 3855 4287 85113 35 2 0 42 1 0 52 0 1 15 0 1 75 1 0 28 1 0 27 2 1 53 1 0 21 4 0 12 1 0 49 6 3 17 chain 3742 chr17 81195210 + 35133603 35133651 MLT1J1 437 + 116 163 211305 29 1 0 18 chain 16618 chr17 81195210 + 35152748 35153029 L1MB3 1562 - 147 435 136617 64 1 0 14 22 31 107 26 25 47 chain 70478 chr17 81195210 + 35209373 35210219 L1PA8A 6298 + 5442 6291 48175 47 1 7 520 3 0 275 chain 40544 chr17 81195210 + 35272877 35273353 L1PA7 6471 + 5985 6462 68524 152 1 2 323 chain 4812 chr17 81195210 + 35319879 35319935 MER66D 528 - 127 182 197217 44 1 0 11 chain 56288 chr17 81195210 + 35354605 35355504 L1PB1 5432 + 4540 5413 54968 69 8 13 83 0 2 339 0 1 5 1 0 51 7 6 5 1 0 20 1 0 13 16 11 9 2 0 46 0 1 6 19 17 44 1 0 15 4 0 7 15 6 18 16 13 6 2 0 24 1 0 21 2 1 12 1 0 9 chain 24367 chr17 81195210 + 35429995 35430304 L1PA8A 6298 + 5980 6290 108281 166 0 4 37 1 0 4 7 5 94 chain 6788 chr17 81195210 + 35436748 35436868 L1MB3 1562 - 13 124 179043 8 9 0 18 1 0 54 1 2 29 chain 10672 chr17 81195210 + 35460956 35461117 MER30 238 - 0 180 157519 48 3 0 31 0 6 15 14 30 50 chain 23805 chr17 81195210 + 35484500 35484792 AluSc 308 + 0 308 111449 41 1 17 250 chain 12410 chr17 81195210 + 35487369 35487507 L1PA4 6152 + 6013 6151 150599 138 chain 25897 chr17 81195210 + 35584507 35584800 AluY 311 + 0 302 100453 68 0 8 56 0 1 169 chain 23138 chr17 81195210 + 35610045 35610348 AluY 311 + 10 310 114947 38 7 6 78 0 1 143 8 5 29 chain 26267 chr17 81195210 + 35628126 35628427 AluSp 311 + 2 303 98945 301 chain 25700 chr17 81195210 + 35638931 35639354 MSTB 430 + 0 430 101287 24 1 0 98 0 1 75 78 85 147 chain 881 chr17 81195210 + 35647619 35647701 MER30 238 - 0 82 163935 82 chain 25074 chr17 81195210 + 35648094 35648389 AluSp 311 - 9 303 104437 125 1 0 169 chain 967 chr17 81195210 + 35648397 35648487 MER30 238 - 133 201 163935 47 27 5 16 chain 4328 chr17 81195210 + 35653526 35653605 MLT1A0 366 - 209 289 202857 44 19 20 16 chain 23336 chr17 81195210 + 35681330 35681622 AluSp 311 + 10 297 113999 13 9 5 97 1 0 172 chain 68539 chr17 81195210 + 35689889 35690693 HERV17-int 4347 + 3547 4347 49020 300 0 1 95 24 19 385 chain 27454 chr17 81195210 + 35693296 35693622 LTR17 781 + 0 326 94801 326 chain 5916 chr17 81195210 + 35693923 35694009 MER5A 189 + 2 93 186035 29 3 9 33 1 0 20 chain 25723 chr17 81195210 + 35703668 35703970 THE1B-int 1605 + 1295 1597 101205 302 chain 26170 chr17 81195210 + 35703978 35704332 THE1B 368 + 0 368 99323 30 9 24 118 3 2 194 chain 24733 chr17 81195210 + 35719632 35719938 AluY 311 + 1 304 106257 50 5 0 72 3 4 132 0 1 44 chain 25373 chr17 81195210 + 35731217 35731528 AluSp 311 - 1 311 102816 182 9 8 120 chain 9742 chr17 81195210 + 35736423 35736531 L1PA3long 6157 - 827 934 159666 30 1 0 77 chain 76558 chr17 81195210 + 35736531 35737368 L1PA3long 6157 + 5315 6152 45183 837 chain 22863 chr17 81195210 + 35752492 35752790 AluSp 311 - 16 306 116266 7 9 0 78 0 3 9 4 3 63 1 0 127 chain 32671 chr17 81195210 + 35753853 35754234 L1PA6 6164 - 9 391 79729 261 0 1 120 chain 11536 chr17 81195210 + 35810082 35810264 MER30 238 - 0 207 154162 10 0 1 63 1 7 21 5 0 6 8 31 68 chain 19527 chr17 81195210 + 35847464 35847716 AluSp 311 + 8 280 128575 13 18 38 221 chain 3575 chr17 81195210 + 35847933 35847974 MER3 215 + 48 89 214047 41 chain 23076 chr17 81195210 + 35877040 35877326 AluSp 311 + 0 291 115271 80 1 6 205 chain 4300 chr17 81195210 + 35883041 35883092 MER63D 473 - 11 62 203211 51 chain 23188 chr17 81195210 + 35905036 35905333 AluSp 311 + 10 294 114734 10 13 0 274 chain 118117 chr17 81195210 + 35925448 35926755 SVA_D 2077 + 337 2075 31765 541 0 83 75 0 2 11 0 352 665 6 0 9 chain 7754 chr17 81195210 + 35932989 35933083 MER53 195 - 89 183 172578 94 chain 80714 chr17 81195210 + 35933804 35934938 L1MA3 4352 + 2539 3665 43300 50 8 7 64 6 1 26 0 2 119 15 0 168 2 7 65 16 17 70 0 1 146 0 4 379 chain 3658 chr17 81195210 + 35972034 35972082 Tigger3 1187 + 690 742 212608 7 0 1 31 0 3 10 chain 24139 chr17 81195210 + 36020865 36021324 L1PB1 5432 - 23 459 109525 5 1 0 10 4 3 21 1 0 25 2 0 14 7 4 8 0 1 12 10 1 9 3 0 11 0 8 40 1 0 12 6 5 52 2 0 9 17 12 13 1 0 16 19 17 128 chain 124374 chr17 81195210 + 36039537 36040932 L1PA5 6144 + 4745 6141 29578 1244 0 1 151 chain 3743 chr17 81195210 + 36068029 36068095 MIR 256 - 77 145 211278 28 4 7 5 1 0 28 chain 23548 chr17 81195210 + 36097543 36097830 AluY 311 + 8 287 112859 45 0 1 72 9 0 161 chain 14047 chr17 81195210 + 36123552 36123755 L1PA8 5853 - 1 199 144388 23 2 1 66 6 5 16 2 1 50 1 0 11 1 0 25 chain 12437 chr17 81195210 + 36132743 36132902 MER30 238 - 2 196 150506 106 0 35 53 chain 45472 chr17 81195210 + 36141163 36141798 Tigger1 2417 + 1164 1781 62523 57 0 1 254 2 3 10 0 1 163 7 24 60 38 0 44 chain 93556 chr17 81195210 + 36142978 36144279 L1P3 4156 - 17 1327 38492 24 2 1 7 2 0 454 0 4 97 19 24 45 5 4 127 17 16 326 1 4 44 20 21 26 1 2 84 chain 41286 chr17 81195210 + 36145534 36145997 L1PA4 6152 - 11 474 67548 463 chain 85421 chr17 81195210 + 36170791 36172103 L1PB2 3958 - 184 1460 41373 7 4 0 3 3 0 11 12 10 54 9 8 64 1 0 77 1 0 82 2 0 14 0 13 55 5 0 13 1 0 54 2 0 6 0 1 78 42 0 115 6 5 152 0 1 27 1 0 10 14 21 5 0 1 12 16 22 30 2 1 128 4 5 18 7 8 165 chain 25549 chr17 81195210 + 36207845 36208147 AluY 311 + 0 297 101993 40 6 0 92 0 1 164 chain 82070 chr17 81195210 + 36217614 36218669 MER11C 1089 + 0 1069 42737 228 0 1 35 0 3 267 65 65 105 0 2 75 1 9 279 chain 7112 chr17 81195210 + 36218858 36218995 MER47B 469 + 178 360 176670 36 32 78 6 1 0 62 chain 7029 chr17 81195210 + 36226472 36226647 L1PB1 5432 + 5270 5422 177260 11 3 0 15 1 0 4 23 12 14 9 6 14 2 0 24 2 1 20 1 0 13 1 0 18 chain 26805 chr17 81195210 + 36238349 36238641 AluYk11 308 + 0 292 96962 292 chain 3617 chr17 81195210 + 36247780 36247826 MER44A 345 - 187 234 213398 19 0 1 27 chain 29477 chr17 81195210 + 36249846 36250155 AluYb8 318 + 0 309 86730 309 chain 76163 chr17 81195210 + 36272175 36273440 L1PA8 5853 + 4859 5853 45387 23 10 6 120 0 5 265 0 2 15 272 4 265 1 0 6 0 1 39 2 0 69 1 0 14 1 0 47 2 1 16 9 8 88 chain 6124 chr17 81195210 + 36305713 36305852 Tigger3b 1229 + 58 319 184239 49 34 161 8 4 0 14 1 0 29 chain 12405 chr17 81195210 + 36308148 36308317 MER44A 345 - 26 190 150615 66 1 0 9 4 0 89 chain 22664 chr17 81195210 + 36315393 36315640 L1PA3long 6157 + 5910 6157 117249 247 chain 4106 chr17 81195210 + 36331314 36331364 MER41B 635 - 81 131 205855 50 chain 29750 chr17 81195210 + 36331444 36331756 AluYb8 318 - 6 318 85655 312 chain 17946 chr17 81195210 + 36351501 36351709 L1PA6 6164 + 5936 6144 132989 208 chain 24108 chr17 81195210 + 36353095 36353391 AluSp 311 - 15 311 109701 15 12 12 269 chain 17538 chr17 81195210 + 36387219 36387511 AluSz 310 + 8 301 134158 143 67 68 82 chain 22573 chr17 81195210 + 36394551 36394825 AluSg7 307 - 17 296 117702 23 0 4 137 0 1 114 chain 25938 chr17 81195210 + 36401559 36401850 AluSp 311 - 12 303 100257 291 chain 59258 chr17 81195210 + 36409412 36410045 SVA_F 1814 + 1181 1814 53244 633 chain 6357 chr17 81195210 + 36415403 36415518 MER33 330 - 63 187 182329 11 3 1 14 1 0 5 14 26 67 chain 28807 chr17 81195210 + 36420514 36420831 AluYa5 310 + 0 310 89857 132 1 0 170 6 0 8 chain 23634 chr17 81195210 + 36455706 36456005 AluSp 311 - 16 311 112395 201 8 0 33 0 4 57 chain 3658 chr17 81195210 + 36456479 36456526 MER66B 489 - 152 198 212607 25 1 0 21 chain 11572 chr17 81195210 + 36496467 36496948 MER39 703 + 548 703 154015 35 330 0 65 0 4 51 chain 13317 chr17 81195210 + 36533080 36533295 Tigger4a 237 + 1 224 147025 24 0 1 8 5 12 65 8 0 9 8 16 88 chain 20160 chr17 81195210 + 36563382 36565058 Tigger1 2417 - 630 1088 126648 41 1 0 22 1 4 52 45 20 61 1329 134 124 chain 26149 chr17 81195210 + 36565903 36566202 AluY 311 + 0 297 99402 75 3 0 51 0 1 170 chain 4428 chr17 81195210 + 36602204 36602255 L1MB3 1562 - 236 287 201606 51 chain 8155 chr17 81195210 + 36712394 36712519 MER45A 178 - 8 135 170197 38 13 15 74 chain 167826 chr17 81195210 + 36786463 36788520 SVA_D 2077 + 14 2060 22301 528 0 80 101 0 3 35 3 0 147 0 85 41 10 12 47 1 0 295 173 0 13 4 0 659 chain 14369 chr17 81195210 + 36787671 36787844 SVA_D 2077 + 985 1159 74508 49 9 10 115 chain 23102 chr17 81195210 + 36826952 36827236 AluSc5 308 - 26 308 115135 43 6 4 235 chain 11012 chr17 81195210 + 36845536 36845655 L1PA5 6144 - 7 126 156155 119 chain 10397 chr17 81195210 + 36888052 36888173 5S 121 - 0 121 158706 121 chain 2989 chr17 81195210 + 36894204 36894237 MER5A1 166 + 98 131 225261 33 chain 7139 chr17 81195210 + 36908033 36908107 tRNA-Asn-AAC 74 - 0 74 176483 74 chain 17740 chr17 81195210 + 36968681 36968893 AluSp 311 + 83 295 133592 212 chain 25599 chr17 81195210 + 36970711 36971020 AluY 311 + 0 304 101733 66 3 0 52 1 0 10 1 0 176 chain 9049 chr17 81195210 + 36985830 36985962 L1MB8 1703 + 1453 1588 165318 67 5 8 60 chain 6079 chr17 81195210 + 36989974 36990046 tRNA-Cys-TGY 72 - 0 72 184590 72 chain 23344 chr17 81195210 + 36998809 36999082 AluSg7 307 - 34 307 113963 273 chain 25396 chr17 81195210 + 37000000 37000289 AluSp 311 - 22 311 102702 289 chain 6537 chr17 81195210 + 37017936 37018008 tRNA-Cys-TGY 72 - 0 72 180950 72 chain 6454 chr17 81195210 + 37023897 37023969 tRNA-Cys-TGY 72 + 0 72 181612 72 chain 6576 chr17 81195210 + 37025544 37025616 tRNA-Cys-TGY 72 - 0 72 180653 72 chain 21526 chr17 81195210 + 37080955 37081244 AluSg7 307 - 5 306 122057 78 1 12 59 2 5 6 3 0 10 1 2 129 chain 110890 chr17 81195210 + 37086260 37087531 SVA_D 2077 - 0 1588 33969 535 0 225 104 1 0 83 0 100 76 0 35 16 2 0 61 40 0 353 chain 30174 chr17 81195210 + 37095901 37096219 AluYb8 318 - 0 318 84262 318 chain 12726 chr17 81195210 + 37105015 37105163 L1PA7 6471 - 7 155 149347 148 chain 26523 chr17 81195210 + 37131862 37132152 AluYk4 311 - 21 311 97960 290 chain 8356 chr17 81195210 + 37137793 37137901 L1MC1 2226 + 1568 1678 169094 22 0 2 86 chain 20716 chr17 81195210 + 37163335 37163577 AluSp 311 - 35 286 124910 228 0 9 14 chain 9114 chr17 81195210 + 37168759 37168886 L1MA3 4352 - 264 394 164995 62 2 0 45 0 5 18 chain 3943 chr17 81195210 + 37171187 37171237 MER21A 919 + 86 155 208229 19 0 19 31 chain 23446 chr17 81195210 + 37176075 37176356 AluSc5 308 + 4 284 113400 251 1 0 29 chain 13831 chr17 81195210 + 37176368 37176545 Tigger1 2417 + 1628 1808 145128 47 0 1 14 0 2 116 chain 22370 chr17 81195210 + 37184140 37184425 AluSc8 310 + 0 297 118629 20 1 5 52 2 1 54 0 3 31 0 6 125 chain 45217 chr17 81195210 + 37208329 37208976 L1PB1 5432 + 4550 5194 62809 63 7 8 10 0 2 72 0 2 97 11 12 14 0 1 272 7 6 5 1 0 24 1 0 9 16 11 11 2 0 25 chain 14475 chr17 81195210 + 37284784 37286808 L1MB5 1630 + 961 1613 142963 170 1797 426 43 2 1 12 chain 3098 chr17 81195210 + 37302285 37302319 LTR26E 604 + 62 96 222954 34 chain 6454 chr17 81195210 + 37309986 37310058 tRNA-Cys-TGY 72 - 0 72 181615 72 chain 6454 chr17 81195210 + 37310743 37310815 tRNA-Cys-TGY 72 - 0 72 181614 72 chain 24815 chr17 81195210 + 37315550 37315849 AluSp 311 - 13 311 105804 166 1 0 132 chain 37084 chr17 81195210 + 37324746 37325678 LTR12F 595 + 0 595 73412 67 0 37 39 3 1 24 48 47 102 358 0 47 0 1 25 2 0 52 12 1 126 7 6 20 chain 23976 chr17 81195210 + 37345747 37346042 AluSp 311 - 8 303 110472 295 chain 30305 chr17 81195210 + 37361778 37362096 AluYb8 318 - 0 318 83904 318 chain 19387 chr17 81195210 + 37398584 37398819 AluY 311 + 0 231 128981 66 5 0 66 0 1 98 chain 15056 chr17 81195210 + 37398819 37398993 AluSp 311 + 86 262 141151 23 0 2 151 chain 19177 chr17 81195210 + 37413228 37413484 AluSg7 307 - 11 257 129594 7 13 0 13 1 3 146 0 1 76 chain 4934 chr17 81195210 + 37462633 37462867 L1M3 994 - 169 460 195877 26 141 200 24 4 2 39 chain 8528 chr17 81195210 + 37465269 37465411 LTR49-int 1717 + 1220 1362 168150 4 1 0 19 1 6 31 17 13 69 chain 5850 chr17 81195210 + 37488496 37488568 MER68 562 + 0 72 186685 72 chain 118587 chr17 81195210 + 37489426 37490741 SVA_B 1603 + 49 1603 31586 741 0 241 566 2 0 6 chain 38896 chr17 81195210 + 37491171 37491649 LTR15 485 + 0 478 70871 107 0 1 17 4 0 27 0 2 122 0 4 156 1 0 6 2 0 36 chain 138903 chr17 81195210 + 37493213 37494788 SVA_D 2077 + 0 2063 26328 9 0 9 524 0 80 295 0 37 35 0 355 12 0 1 31 11 14 434 1 2 207 0 2 16 chain 112306 chr17 81195210 + 37502948 37504239 L1PA5 6144 - 1 1294 33587 266 1 3 270 1 0 104 0 2 471 1 0 177 chain 3434 chr17 81195210 + 37504372 37504409 MER4E1 777 + 663 700 216511 37 chain 3273 chr17 81195210 + 37506208 37506252 Tigger4b 360 + 133 175 219549 28 2 0 14 chain 24275 chr17 81195210 + 37518268 37518561 AluY 311 + 10 298 108804 117 5 0 171 chain 13012 chr17 81195210 + 37603699 37603900 Tigger4b 360 + 160 360 148197 6 0 2 5 2 0 115 17 0 13 0 16 43 chain 19023 chr17 81195210 + 37611572 37611843 AluSg7 307 + 21 288 130059 37 2 0 66 21 19 145 chain 24640 chr17 81195210 + 37612539 37612827 AluSq10 312 + 11 300 106789 85 0 1 203 chain 25059 chr17 81195210 + 37700878 37701174 AluSp 311 - 5 303 104512 24 0 3 76 1 0 195 chain 26124 chr17 81195210 + 37730666 37730983 AluSq 315 + 0 315 99509 63 0 2 69 6 2 179 chain 21156 chr17 81195210 + 37733557 37733817 AluSc 308 - 34 296 123351 195 3 5 62 chain 24262 chr17 81195210 + 37741972 37742249 AluSp 311 - 24 301 108888 277 chain 4537 chr17 81195210 + 37811807 37811864 ORSL-2b 485 - 220 277 200386 57 chain 8458 chr17 81195210 + 37838515 37838668 LTR54B 464 + 275 423 168526 16 11 8 34 0 1 15 1 0 11 6 5 27 1 0 31 chain 21801 chr17 81195210 + 37849384 37849701 Tigger2a 444 + 0 309 121015 50 5 6 43 22 13 197 chain 25707 chr17 81195210 + 37853596 37853900 AluSp 311 - 0 303 101258 133 1 0 170 chain 7703 chr17 81195210 + 37855101 37855199 MER53 195 + 6 105 172917 24 0 1 74 chain 4093 chr17 81195210 + 37866927 37867022 MIR 256 + 28 139 206031 24 31 49 5 2 0 33 chain 26375 chr17 81195210 + 37931896 37932193 AluSp 311 + 1 298 98510 297 chain 16920 chr17 81195210 + 37978498 37978821 THE1D 372 + 0 332 135796 15 0 2 39 15 9 95 65 81 70 4 1 20 chain 113845 chr17 81195210 + 37979189 37980765 THE1D-int 1627 + 12 1621 33138 97 54 0 283 0 81 68 0 2 234 4 10 150 8 9 208 7 6 27 5 3 5 1 0 367 1 0 4 0 1 10 1 0 13 0 3 15 4 3 10 chain 8874 chr17 81195210 + 37981248 37981412 THE1D 372 + 146 328 166263 34 40 58 90 chain 29014 chr17 81195210 + 38041774 38042605 L1PB3 3668 - 95 588 88925 5 2 0 23 111 91 63 318 2 98 1 0 8 5 6 197 chain 25859 chr17 81195210 + 38073666 38074076 LTR7B 505 + 0 505 100608 105 0 10 49 26 38 32 2 23 26 0 1 28 0 41 84 33 43 25 chain 41587 chr17 81195210 + 38090905 38091436 MER41A 554 - 0 554 67175 110 0 4 114 0 1 236 8 26 63 chain 5738 chr17 81195210 + 38112428 38112493 LTR47A 437 + 310 375 187757 65 chain 23404 chr17 81195210 + 38154875 38160297 Tigger1 2417 + 108 2308 113627 54 9 8 17 0 6 59 426 125 13 3 1 42 1 0 14 3185 1290 45 13 16 10 0 1 85 0 1 41 0 2 20 1293 263 28 5 0 59 chain 124210 chr17 81195210 + 38167009 38168988 LTR12C 1709 + 6 1688 29622 289 1 0 88 4 0 79 0 5 110 2 1 150 0 1 4 1 0 104 1 0 92 502 203 92 0 4 460 chain 37769 chr17 81195210 + 38167944 38168384 LTR7 482 - 9 482 72463 40 11 14 135 0 30 254 chain 25310 chr17 81195210 + 38199860 38200157 AluYk4 311 + 1 295 103175 97 4 1 196 chain 27493 chr17 81195210 + 38202716 38203007 AluYa5 310 + 0 290 94670 123 1 0 167 chain 10264 chr17 81195210 + 38205124 38205276 MER4E1 777 - 28 188 159313 48 1 12 38 0 1 37 0 6 8 10 0 10 chain 24535 chr17 81195210 + 38213443 38213738 AluSp 311 + 2 298 107339 123 0 1 172 chain 5588 chr17 81195210 + 38271459 38271618 MER5A 189 - 0 157 189189 17 6 7 33 57 57 38 3 0 5 chain 30305 chr17 81195210 + 38342538 38342856 AluYb8 318 + 0 318 83892 318 chain 58640 chr17 81195210 + 38354148 38354998 LTR12 884 + 0 872 53613 103 38 0 16 0 25 37 0 25 49 0 25 77 24 0 21 2 0 40 0 18 115 0 4 125 1 0 62 0 2 54 0 2 20 18 4 48 chain 29589 chr17 81195210 + 38384256 38384566 AluYa5 310 - 0 310 86238 310 chain 23163 chr17 81195210 + 38388897 38389179 AluSp 311 - 16 301 114840 30 0 2 56 1 2 195 chain 26254 chr17 81195210 + 38391821 38392125 AluSp 311 - 8 311 99005 200 1 0 103 chain 7893 chr17 81195210 + 38399474 38399568 HY4 93 + 0 93 171703 66 1 0 27 chain 22020 chr17 81195210 + 38414592 38414853 AluSc5 308 + 29 290 120140 185 0 1 42 2 1 32 chain 24415 chr17 81195210 + 38428269 38428561 AluSp 311 - 10 302 108001 169 1 0 7 0 1 115 chain 23289 chr17 81195210 + 38453543 38453868 L1PA8 5853 + 5506 5847 114261 15 1 2 39 1 0 48 2 0 71 1 0 37 6 26 16 2 1 86 chain 40169 chr17 81195210 + 38528698 38529167 LTR7C 471 - 0 471 69078 32 0 2 437 chain 31018 chr17 81195210 + 38529248 38529677 MLT2A1 477 + 0 477 82481 48 0 8 114 4 1 8 0 1 24 0 1 58 4 11 61 2 0 50 3 43 10 4 0 39 chain 108923 chr17 81195210 + 38531904 38533518 LTR12C 1709 + 0 1703 34456 24 0 13 9 9 5 160 5 3 60 15 9 181 0 5 4 1 0 54 0 1 155 5 4 36 0 159 230 1 0 4 4 2 90 51 2 14 11 4 108 25 19 12 0 1 67 24 24 144 33 22 78 chain 4751 chr17 81195210 + 38538696 38538752 MER5A 189 - 0 56 197904 56 chain 5048 chr17 81195210 + 38539254 38539318 MER5A1 166 + 63 127 194654 64 chain 24409 chr17 81195210 + 38539342 38539631 AluSg7 307 + 9 300 108034 41 0 1 80 0 1 168 chain 6627 chr17 81195210 + 38547487 38547572 HY1 111 - 2 92 180254 31 1 0 34 0 6 19 chain 29557 chr17 81195210 + 38577407 38577721 AluYb8 318 + 0 314 86390 314 chain 38537 chr17 81195210 + 38655248 38655710 LTR2 463 + 0 463 71384 362 12 13 88 chain 24308 chr17 81195210 + 38684970 38685317 L1PA8 5853 + 5506 5853 108614 58 1 0 45 2 0 70 1 0 4 15 14 47 1 0 11 7 6 74 0 7 11 chain 23119 chr17 81195210 + 38700729 38701013 AluY 311 + 18 303 115043 46 2 0 68 0 1 145 0 2 23 chain 49265 chr17 81195210 + 38702610 38703249 L1PA8 5853 - 0 629 59540 92 2 1 16 7 6 43 11 7 9 2 1 70 2 0 46 1 0 338 chain 57368 chr17 81195210 + 38734700 38735353 L1PA5 6144 + 5488 6144 54304 508 0 1 74 0 2 71 chain 399118 chr17 81195210 + 38739362 38745097 L1PB1 5432 - 12 5377 10135 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 18 3 4 6 11 0 3 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 25 21 12 15 0 11 5 0 9 2 3 50 1 0 5 0 1 77 0 2 82 1 2 178 0 2 82 3 0 12 6 10 781 4 6 63 0 1 22 5 7 12 26 5 18 0 1 94 0 11 555 0 1 180 3 0 6 0 2 8 316 12 167 0 1 81 1 2 55 0 1 9 1 2 666 1 2 60 0 1 137 37 29 27 0 1 124 50 42 5 2 0 7 1 0 316 18 6 158 0 1 36 2 1 121 0 1 99 0 1 346 4 1 107 1 4 59 0 1 82 chain 25279 chr17 81195210 + 38750723 38751146 MSTA 426 + 0 426 103323 54 4 5 44 0 1 5 40 47 24 5 4 21 3 1 23 9 7 5 1 0 185 chain 38406 chr17 81195210 + 38762657 38763169 MER41C 542 - 9 542 71568 203 11 32 108 0 8 13 8 0 20 1 0 99 0 1 49 chain 3779 chr17 81195210 + 38789651 38789697 MER113 458 - 55 101 210682 46 chain 23707 chr17 81195210 + 38805622 38805905 AluY 311 + 16 295 111994 21 1 0 94 3 0 164 chain 22242 chr17 81195210 + 38806430 38806717 AluSq2 311 - 11 303 119161 140 7 8 18 0 2 78 0 1 23 0 1 21 chain 14384 chr17 81195210 + 38814715 38814899 MIR 256 - 11 195 143257 184 chain 39473 chr17 81195210 + 38845912 38846355 L1PA4 6152 - 12 455 70054 443 chain 24023 chr17 81195210 + 38861167 38861466 AluSg7 307 + 0 298 110198 64 2 0 210 0 1 23 chain 4722 chr17 81195210 + 38865922 38866009 MER21C 908 + 270 356 198266 26 17 16 44 chain 26661 chr17 81195210 + 38866816 38867223 MSTA 426 - 12 426 97448 18 5 1 34 0 10 100 20 18 100 3 0 19 9 14 73 0 1 26 chain 28956 chr17 81195210 + 38880701 38881059 THE1C 375 + 2 362 89189 201 0 3 144 1 0 12 chain 9215 chr17 81195210 + 38916626 38916739 L1PA8 5853 - 0 112 164479 92 3 2 18 chain 26140 chr17 81195210 + 38931378 38931672 AluY 311 + 9 305 99439 266 0 2 28 chain 91356 chr17 81195210 + 38970345 38971443 L1PA6 6164 + 5056 6162 39172 54 1 0 4 0 1 203 0 4 33 0 2 636 14 20 143 4 0 6 chain 14732 chr17 81195210 + 38985552 38985772 L1MA3 4352 + 3236 3452 142164 98 1 0 4 0 1 44 2 0 13 8 7 29 5 1 10 0 3 6 chain 5116 chr17 81195210 + 38989865 38989962 L1MA4 2864 + 2598 2690 193902 56 20 17 12 2 0 7 chain 21769 chr17 81195210 + 39010055 39010313 L1PA7 6471 + 6211 6468 121138 129 1 0 128 chain 2832 chr17 81195210 + 39047956 39048000 MamRep4096 390 + 34 75 228203 4 1 0 30 2 0 7 chain 4949 chr17 81195210 + 39049191 39049248 L1MA3 4352 - 389 446 195714 57 chain 8101 chr17 81195210 + 39056731 39056835 MER33 330 - 36 144 170482 47 0 4 57 chain 48468 chr17 81195210 + 39061939 39062573 L1PA7 6471 - 4 635 60138 135 0 1 44 0 2 8 7 1 26 0 1 4 1 0 409 chain 25362 chr17 81195210 + 39087264 39087561 AluSc 308 - 12 308 102873 52 2 1 243 chain 5359 chr17 81195210 + 39100350 39100443 L1PB1 5432 - 37 124 191445 25 1 0 26 2 0 12 12 9 15 chain 32497 chr17 81195210 + 39105681 39106146 LTR22A 463 - 0 463 80029 51 4 3 38 0 1 6 29 28 286 6 5 45 chain 22613 chr17 81195210 + 39106923 39107224 AluSp 311 + 14 304 117515 111 24 13 166 chain 76392 chr17 81195210 + 39124194 39125118 L1PA7 6471 - 13 940 45270 161 0 2 549 0 1 41 0 1 63 2 1 108 chain 15395 chr17 81195210 + 39126378 39126712 Tigger3a 397 - 15 396 140213 27 49 53 131 0 1 5 2 0 26 9 11 11 32 77 7 3 0 32 chain 7508 chr17 81195210 + 39130374 39130726 L1MDa 1598 - 130 480 174118 19 12 11 63 160 164 31 38 37 15 1 0 4 3 0 6 chain 5741 chr17 81195210 + 39142425 39142488 L1PA2 6032 + 5927 5990 187721 63 chain 21660 chr17 81195210 + 39158186 39158463 MER51D 577 - 197 473 121543 40 1 0 236 chain 15299 chr17 81195210 + 39166406 39166614 MER30 238 + 0 238 140495 15 0 18 74 4 16 115 chain 32464 chr17 81195210 + 39175349 39175830 MER1A 529 - 7 529 80086 57 23 22 298 24 65 39 1 2 39 chain 10290 chr17 81195210 + 39188401 39188522 L1PA5 6144 + 6023 6144 159179 121 chain 5789 chr17 81195210 + 39196270 39196354 MER21A 919 - 791 888 187271 55 6 19 23 chain 84214 chr17 81195210 + 39200723 39201651 L1PA5 6144 - 1 931 41811 17 1 0 342 0 3 568 chain 16989 chr17 81195210 + 39213722 39213996 L1PA15 4387 + 4066 4327 135619 38 2 1 26 1 0 54 1 0 15 4 0 17 1 0 52 4 1 44 3 1 12 chain 4012 chr17 81195210 + 39236259 39236306 L1PB4 2604 - 140 187 207206 47 chain 19289 chr17 81195210 + 39237165 39237380 L1PA4 6152 + 5935 6151 129268 103 0 1 112 chain 39573 chr17 81195210 + 39242018 39242462 L1PA4 6152 - 854 1298 69930 444 chain 74127 chr17 81195210 + 39242464 39243315 L1PA4 6152 + 5295 6152 46446 334 0 1 122 0 4 239 1 0 91 0 2 64 chain 33346 chr17 81195210 + 39243697 39244192 MER4A1 472 + 0 472 78662 257 14 18 7 5 0 114 31 9 67 chain 45008 chr17 81195210 + 39245679 39246223 L1PA8A 6298 + 5734 6278 63050 544 chain 144552 chr17 81195210 + 39247982 39249878 MER4-int 2692 + 4 1986 25390 7 1 0 21 6 4 63 2 0 6 2 0 8 1 3 9 3 0 306 0 2 7 14 12 206 0 1 24 0 75 23 1 14 767 5 4 4 0 1 91 4 0 3 0 9 312 chain 33421 chr17 81195210 + 39251565 39252015 MER4A1 472 + 0 470 78532 220 0 1 5 5 26 11 1 0 5 8 7 186 1 0 4 0 1 4 chain 14147 chr17 81195210 + 39257003 39257160 L1PA5 6144 + 5966 6123 144048 157 chain 31897 chr17 81195210 + 39263735 39264203 MER4A1 472 + 0 472 81017 132 0 3 90 1 22 21 36 14 114 7 9 67 chain 45466 chr17 81195210 + 39265683 39266227 L1PA8A 6298 + 5734 6278 62528 544 chain 190143 chr17 81195210 + 39268287 39271847 MER4-int 2692 + 4 2692 20033 7 1 0 21 6 4 14 16 17 31 3 1 6 2 0 9 0 2 542 0 1 24 0 75 20 0 18 124 4 5 273 0 3 245 0 1 5 9 9 16 1 2 83 1 0 8 0 1 411 966 0 37 23 20 103 7 6 115 3 1 8 0 1 410 0 3 6 chain 35106 chr17 81195210 + 39271857 39272306 MER4A1 472 + 2 472 76043 218 0 1 9 4 25 13 8 7 197 chain 16724 chr17 81195210 + 39277220 39277402 L1PA5 6144 + 5962 6144 136330 182 chain 19415 chr17 81195210 + 39281719 39281966 L1PA8 5853 + 5609 5853 128903 72 1 0 59 2 1 22 1 0 90 chain 105583 chr17 81195210 + 39284347 39285834 L1PB 1623 + 144 1585 35354 34 2 0 10 7 4 77 1 0 118 0 1 10 2 1 19 1 0 66 1 0 516 0 1 305 4 1 139 1 0 7 2 1 30 8 4 13 5 1 12 63 39 22 2 0 10 chain 12482 chr17 81195210 + 39291278 39291753 L1PA8 5853 + 5688 5850 150329 52 2 1 19 312 0 90 chain 20005 chr17 81195210 + 39294160 39294413 L1PA6 6164 - 2 234 127130 186 21 0 46 chain 26403 chr17 81195210 + 39299154 39299518 THE1C 375 - 0 375 98398 236 10 23 102 2 0 14 chain 43798 chr17 81195210 + 39310086 39310632 LTR19B 566 + 0 566 64454 299 1 3 10 1 17 116 0 1 67 0 1 52 chain 69500 chr17 81195210 + 39322181 39322942 L1PA2 6032 - 0 762 48607 177 0 1 584 chain 16207 chr17 81195210 + 39325436 39325734 THE1B 368 + 8 286 137729 45 41 17 99 1 0 27 0 3 7 4 8 10 7 6 12 2 1 43 chain 28593 chr17 81195210 + 39344864 39345161 AluYg6 310 + 0 297 90774 297 chain 48226 chr17 81195210 + 39347767 39348406 L1PA8 5853 + 5220 5853 60297 300 10 11 33 1 0 8 0 1 32 1 0 3 2 0 71 1 0 14 1 0 47 2 1 19 2 1 92 chain 13500 chr17 81195210 + 39349154 39349315 L1PA5 6144 - 4 165 146361 161 chain 64774 chr17 81195210 + 39350017 39350858 L1PA8 5853 + 5016 5853 50674 101 1 2 90 0 1 354 1 0 46 2 0 60 12 11 59 3 2 18 1 0 93 chain 7882 chr17 81195210 + 39351079 39351232 L1PA15 4387 + 4225 4366 171798 35 13 10 46 2 0 11 8 2 27 1 0 10 chain 35152 chr17 81195210 + 39354563 39355140 L1PB1 5432 + 4861 5422 75988 190 1 0 47 6 9 7 1 0 21 1 0 12 1 0 21 2 0 46 17 22 10 0 1 34 1 0 15 2 0 6 17 9 16 2 0 5 17 14 24 1 0 21 1 0 13 1 0 18 chain 558296 chr17 81195210 + 39357119 39363152 L1PA2 6032 - 1 6031 472 1125 0 1 702 5 0 1147 0 1 3054 chain 47153 chr17 81195210 + 39374688 39375609 L1P2 5180 + 2230 2846 61084 91 4 0 73 0 3 147 304 0 302 chain 272237 chr17 81195210 + 39375898 39379611 L1PA7 6471 + 2854 6459 15067 159 24 28 23 0 40 51 382 0 52 0 1 341 3 7 280 2 0 1248 2 3 316 0 222 6 1 0 53 0 4 449 1 2 320 chain 524828 chr17 81195210 + 39396189 39402266 L1PA5 6144 + 0 6144 4700 206 6 27 74 0 1 39 6 7 114 3 7 77 0 1 53 0 1 174 0 1 246 1 2 36 0 1 1244 0 3 1078 0 25 92 2 0 369 0 1 8 0 1 88 0 1 132 0 2 2018 0 4 11 chain 193064 chr17 81195210 + 39416189 39418588 L1PA8 5853 + 3458 5853 19762 44 3 4 139 0 1 130 0 1 95 1 2 142 1 2 314 2 0 62 5 6 1164 1 0 46 2 0 69 1 0 16 2 0 45 2 1 16 5 4 92 chain 27035 chr17 81195210 + 39435256 39435754 L1MA1 4479 + 3714 4190 96159 25 2 0 15 2 1 71 1 0 8 17 15 10 1 0 88 1 0 5 3 0 103 0 1 4 0 5 13 1 0 30 15 10 18 24 20 16 8 1 17 chain 47774 chr17 81195210 + 39437454 39438013 L1PA6 6164 + 5600 6161 60639 188 0 1 349 0 1 22 chain 16257 chr17 81195210 + 39452152 39452349 L1PA5 6144 - 12 219 137587 135 7 17 55 chain 76043 chr17 81195210 + 39475887 39476930 L1PA16 3655 + 2197 3241 45452 203 0 3 154 10 12 101 27 26 201 2 1 15 5 4 284 1 0 40 chain 7742 chr17 81195210 + 39487278 39487384 MER2 342 + 186 293 172647 78 1 2 27 chain 15653 chr17 81195210 + 39493051 39493243 MER1A 529 - 89 281 139423 192 chain 70347 chr17 81195210 + 39498082 39498937 MER11D 897 - 0 882 48241 39 0 4 70 0 1 50 5 2 115 0 23 434 1 3 141 chain 39786 chr17 81195210 + 39517283 39517745 L1PA7 6471 - 4 466 69646 462 chain 11473 chr17 81195210 + 39530847 39531002 MLT2B1 522 + 0 158 154411 136 3 6 16 chain 9429 chr17 81195210 + 39539568 39539696 MER58A 224 + 54 181 163417 121 1 0 6 chain 45547 chr17 81195210 + 39583507 39584547 L1PB1 5432 - 12 724 62460 15 10 14 21 1 0 24 2 0 14 8 5 19 5 1 11 3 0 15 1 0 44 19 17 53 2 0 9 8 4 8 1 0 28 323 15 290 2 1 104 chain 17835 chr17 81195210 + 39616815 39617106 L1PA8 5853 + 5558 5841 133287 6 1 0 44 2 0 65 7 6 10 16 15 36 2 1 19 1 0 11 9 8 62 chain 11886 chr17 81195210 + 39624211 39624381 U2 167 + 0 164 152671 131 17 11 22 chain 95048 chr17 81195210 + 39625457 39626581 L1PA8 5853 + 4738 5853 38078 271 2 0 555 1 0 44 2 0 71 1 0 14 1 0 47 2 1 19 1 0 93 chain 3902 chr17 81195210 + 39626593 39626634 L1PA3long 6157 - 172 213 208821 41 chain 14792 chr17 81195210 + 39626634 39626799 L1PA3long 6157 + 5991 6156 141961 165 chain 8951 chr17 81195210 + 39660009 39660145 MER30 238 - 0 114 165869 105 22 0 9 chain 3558 chr17 81195210 + 39704664 39704704 MIRb 242 - 109 149 214355 40 chain 37848 chr17 81195210 + 39764220 39764657 L1PA6 6164 + 5723 6162 72344 285 0 1 14 0 1 138 chain 3557 chr17 81195210 + 39827534 39827676 THE1B 368 - 59 204 139095 60 9 14 43 2 0 28 chain 30144 chr17 81195210 + 39827684 39828016 L1PA4 6152 + 5804 6136 84338 332 chain 3106 chr17 81195210 + 39828039 39828163 THE1B 368 - 205 344 139095 88 16 31 20 chain 3129 chr17 81195210 + 39828788 39828821 MER57E1 380 + 304 337 222386 33 chain 4444 chr17 81195210 + 39830641 39830745 MER34C_ 573 - 469 541 201410 30 40 8 34 chain 91488 chr17 81195210 + 39841584 39842650 MER11C 1089 + 0 1073 39139 249 1 4 33 0 2 257 0 1 52 0 1 474 chain 7571 chr17 81195210 + 39874405 39874495 5S 121 + 0 90 173715 90 chain 9069 chr17 81195210 + 39876753 39876901 MER34A1 583 - 395 556 165221 24 13 23 30 8 11 73 chain 3436 chr17 81195210 + 39903563 39903623 MLT2B1 522 + 4 73 216468 30 7 9 9 0 7 14 chain 17182 chr17 81195210 + 39909402 39909607 AluY 311 + 32 287 135084 76 0 50 129 chain 21568 chr17 81195210 + 39912868 39913164 AluSc 308 + 0 290 121888 76 3 0 60 11 13 5 2 0 131 3 0 5 chain 10650 chr17 81195210 + 39937022 39937150 AluSx 319 + 8 136 157603 128 chain 26185 chr17 81195210 + 39974937 39975229 AluYc3 301 + 0 293 99259 138 0 1 154 chain 134421 chr17 81195210 + 40031663 40033176 SVA_D 2077 + 0 2077 27128 13 5 6 39 1 3 609 0 71 20 3 0 152 0 488 224 0 1 350 0 4 97 chain 31036 chr17 81195210 + 40033830 40034250 MLT2A1 477 + 17 477 82459 119 14 15 18 1 5 209 5 41 34 1 0 19 chain 21646 chr17 81195210 + 40097742 40098037 AluY 311 + 8 299 121587 24 1 0 101 1 0 12 24 8 83 5 19 44 chain 26537 chr17 81195210 + 40099605 40099979 LTR7B 505 - 10 505 97901 41 14 13 89 0 41 21 0 54 36 1 0 5 13 31 49 0 10 105 chain 22762 chr17 81195210 + 40106595 40106887 AluSp 311 + 8 301 116769 64 8 9 220 chain 2880 chr17 81195210 + 40110709 40110759 MER3 215 - 82 139 227359 6 0 6 27 4 5 13 chain 23590 chr17 81195210 + 40145773 40146073 AluSp 311 + 0 294 112630 7 0 1 117 8 1 168 chain 13830 chr17 81195210 + 40159856 40160015 AluSp 311 - 5 164 145129 159 chain 25787 chr17 81195210 + 40186515 40186831 AluSp 311 + 0 311 100918 120 5 0 191 chain 19472 chr17 81195210 + 40208609 40208966 THE1B 368 + 0 368 128746 90 6 8 13 0 3 6 20 18 39 58 66 125 chain 26435 chr17 81195210 + 40296668 40296972 AluY 311 + 4 311 98284 127 0 2 115 0 1 62 chain 24346 chr17 81195210 + 40310291 40310561 AluY 311 + 25 295 108388 270 chain 24558 chr17 81195210 + 40363253 40363536 AluSp 311 + 11 294 107205 4 1 0 119 0 1 159 chain 3044 chr17 81195210 + 40377879 40377921 L1MC4 1079 + 725 767 224121 28 1 0 4 0 1 9 chain 28302 chr17 81195210 + 40394839 40395153 SVA_D 2077 + 1759 2071 91938 181 1 0 119 1 0 12 chain 24016 chr17 81195210 + 40406833 40407118 AluSc 308 + 5 290 110236 285 chain 99394 chr17 81195210 + 40416232 40417309 L1PA3long 6157 - 5 1082 36927 1077 chain 25659 chr17 81195210 + 40525626 40525920 AluY 311 + 1 300 101453 88 0 4 39 0 1 167 chain 4501 chr17 81195210 + 40528254 40528306 Charlie1a 1436 + 573 625 200770 52 chain 26590 chr17 81195210 + 40570247 40570548 AluSp 311 - 10 311 97696 301 chain 7495 chr17 81195210 + 40583902 40584108 MER92B 628 - 72 298 174184 6 2 0 18 42 49 42 1 0 5 33 35 40 0 14 17 chain 4648 chr17 81195210 + 40592221 40592277 U7 62 - 6 62 199078 56 chain 3391 chr17 81195210 + 40598902 40598961 L1MDa 1598 + 1253 1312 217265 15 5 6 5 1 0 33 chain 11306 chr17 81195210 + 40599557 40599694 AluSp 311 + 0 142 155044 88 0 5 49 chain 140941 chr17 81195210 + 40600471 40602063 SVA_D 2077 + 6 2077 25992 13 11 0 810 1 0 79 1 0 4 0 489 43 0 1 4 1 2 385 1 2 239 chain 13364 chr17 81195210 + 40627441 40627650 MER30 238 + 0 238 146836 22 4 14 4 1 0 67 4 20 18 12 16 77 chain 37486 chr17 81195210 + 40629970 40630387 L1PA5 6144 + 5725 6142 72830 417 chain 44191 chr17 81195210 + 40680439 40680950 MER9a2 513 - 0 513 63955 238 0 2 273 chain 15492 chr17 81195210 + 40692162 40692395 L1PA8 5853 + 5602 5829 139919 6 2 0 16 0 1 23 1 0 34 12 10 16 0 1 4 1 0 31 1 0 16 1 0 69 chain 22886 chr17 81195210 + 40713332 40713604 AluSp 311 - 34 307 116159 67 0 1 205 chain 24462 chr17 81195210 + 40753317 40753619 AluY 311 + 9 309 107747 114 1 0 9 0 1 128 4 0 15 0 2 31 chain 7926 chr17 81195210 + 40769206 40769313 MER2 342 + 132 237 171466 28 0 1 52 3 0 24 chain 3385 chr17 81195210 + 40796228 40796270 U6 107 + 11 56 217361 36 0 3 6 chain 27259 chr17 81195210 + 40803992 40804291 AluYf4 310 - 11 310 95406 299 chain 24943 chr17 81195210 + 40884504 40884783 AluYf4 310 + 0 279 105093 279 chain 25175 chr17 81195210 + 40885375 40885677 AluY 311 + 2 301 103874 28 4 0 102 0 1 168 chain 6334 chr17 81195210 + 40944432 40944546 L1MB2 1706 - 13 124 182509 65 19 17 13 1 0 16 chain 25361 chr17 81195210 + 40959156 40959457 AluY 311 + 5 307 102879 121 0 1 180 chain 4236 chr17 81195210 + 40965192 40965239 Tigger4b 360 + 142 189 204095 47 chain 24003 chr17 81195210 + 40973947 40974239 AluSc 308 + 5 290 110315 100 0 2 175 9 0 8 chain 21510 chr17 81195210 + 40976506 40976780 AluSz 310 + 3 266 122104 147 21 10 106 chain 24679 chr17 81195210 + 40981619 40981901 AluSp 311 - 6 291 106554 210 0 3 72 chain 4825 chr17 81195210 + 41021728 41021815 L1MA8 2339 - 82 167 197073 38 0 5 7 4 3 8 6 0 24 chain 8131 chr17 81195210 + 41084866 41084959 HY4 93 - 0 93 170321 93 chain 22717 chr17 81195210 + 41098395 41098680 AluSp 311 - 30 311 117000 30 4 0 149 1 0 97 0 1 4 chain 24131 chr17 81195210 + 41118317 41118611 AluSq10 312 + 1 295 109584 173 2 1 7 0 1 112 chain 153433 chr17 81195210 + 41124367 41126028 SVA_F 1814 + 0 1812 24169 701 0 40 139 1 0 18 0 64 125 0 49 34 1 0 642 chain 8746 chr17 81195210 + 41130620 41130730 L1PA8 5853 + 5744 5853 166940 16 1 0 93 chain 7379 chr17 81195210 + 41149940 41150024 HY4 93 - 9 93 174904 84 chain 24287 chr17 81195210 + 41172634 41172921 AluSp 311 + 22 311 108725 88 1 2 12 0 1 186 chain 5121 chr17 81195210 + 41185965 41186019 SVA_E 1901 + 1837 1891 193863 54 chain 21730 chr17 81195210 + 41251293 41251577 AluSp 311 - 17 301 121276 12 0 1 161 13 12 98 chain 23369 chr17 81195210 + 41254374 41254650 AluSc5 308 - 11 287 113819 276 chain 24135 chr17 81195210 + 41267248 41267533 AluSx4 309 + 10 295 109555 285 chain 32186 chr17 81195210 + 41279463 41280533 LTR12C 1709 + 1033 1709 80552 45 560 193 112 35 34 46 23 0 15 1 0 63 1 0 71 14 13 84 chain 107374 chr17 81195210 + 41288193 41289458 L1PA5 6144 + 4874 6143 34871 325 0 1 271 0 4 432 0 4 224 5 0 8 chain 7363 chr17 81195210 + 41291098 41291198 MER21C 908 + 14 111 175018 92 3 0 5 chain 21934 chr17 81195210 + 41293552 41293813 AluY 311 + 2 267 120481 29 0 1 91 1 4 140 chain 41448 chr17 81195210 + 41305232 41305708 LTR15 485 + 0 477 67349 344 0 1 132 chain 23880 chr17 81195210 + 41309733 41310030 AluSp 311 + 2 300 111024 120 1 0 15 5 6 92 0 1 64 chain 26738 chr17 81195210 + 41311319 41311643 SVA_F 1814 - 794 1180 97193 54 5 21 8 0 2 42 0 1 4 0 3 66 0 40 145 chain 20986 chr17 81195210 + 41311643 41311874 SVA_D 2077 + 1846 2077 123966 231 chain 35797 chr17 81195210 + 41312262 41312737 LTR2 463 - 0 463 75137 88 23 20 88 8 0 160 1 0 107 chain 422474 chr17 81195210 + 41312737 41317755 Harlequin-int 5206 - 0 5081 9475 38 1 5 470 2 5 166 0 5 95 21 29 132 5 51 492 2 1 41 4 0 465 0 1 283 0 1 123 0 1 67 0 1 466 8 8 971 4 7 101 0 1 57 0 1 115 1 0 39 9 10 336 1 0 140 5 1 105 4 0 68 0 2 181 chain 32975 chr17 81195210 + 41319269 41319715 LTR2 463 - 16 463 79255 72 15 16 200 6 7 42 8 7 103 chain 100707 chr17 81195210 + 41338537 41340755 L1PA7 6471 - 1 1278 36579 4 1 0 144 1 6 8 5 0 469 0 1 27 1010 65 122 0 3 165 0 1 262 chain 22761 chr17 81195210 + 41349886 41350197 AluSp 311 + 0 295 116774 128 2 0 22 16 1 107 0 1 36 chain 24620 chr17 81195210 + 41358398 41358686 AluSx4 309 + 4 293 106890 129 0 1 159 chain 25563 chr17 81195210 + 41382766 41383065 AluY 311 + 4 304 101914 232 0 1 67 chain 21016 chr17 81195210 + 41395514 41395808 THE1B 368 - 62 368 123861 63 11 19 10 9 14 31 1 0 169 chain 14286 chr17 81195210 + 41395816 41395985 THE1B-int 1605 - 9 183 143603 72 0 5 97 chain 4348 chr17 81195210 + 41398829 41398881 THE1B-int 1605 - 1184 1237 202625 35 0 1 17 chain 75242 chr17 81195210 + 41412048 41413020 LTR13A 966 - 0 966 45903 200 5 4 301 1 0 71 5 4 243 6 4 54 1 0 85 chain 78050 chr17 81195210 + 41432321 41433281 LTR5_Hs 974 + 0 974 44491 115 5 13 160 0 1 530 8 15 31 8 6 103 chain 92444 chr17 81195210 + 41442979 41444047 MER11C 1089 - 16 1089 38828 17 0 1 487 2 1 87 0 1 162 0 4 313 chain 15966 chr17 81195210 + 41449343 41449571 LTR76 689 + 7 262 138469 7 0 8 23 5 4 80 8 28 105 chain 6053 chr17 81195210 + 41450724 41450798 LTR13A 966 - 878 952 184788 74 chain 2920 chr17 81195210 + 41452951 41452982 LTR8 732 - 57 88 226674 31 chain 12571 chr17 81195210 + 41464610 41464781 U2 167 - 3 167 149959 22 6 2 9 2 0 49 1 0 82 chain 22900 chr17 81195210 + 41474410 41474681 AluSp 311 + 17 287 116110 9 1 0 261 chain 23291 chr17 81195210 + 41490440 41490721 AluY 311 + 10 291 114250 122 0 1 120 6 5 33 chain 21179 chr17 81195210 + 41500000 41500258 AluSq2 311 + 40 298 123283 258 chain 23290 chr17 81195210 + 41523359 41523643 AluSp 311 + 10 293 114256 22 1 0 261 chain 7016 chr17 81195210 + 41524318 41524481 L1MB7 1623 - 132 269 177351 12 1 0 27 4 1 6 8 0 9 17 7 6 1 0 48 1 0 13 2 0 8 chain 19895 chr17 81195210 + 41528236 41528459 SVA_F 1814 + 530 753 127502 223 chain 145694 chr17 81195210 + 41528855 41530574 SVA_D 2077 + 349 2077 25224 33 0 1 513 12 54 10 0 1 35 0 12 29 4 6 213 49 0 132 0 1 4 9 8 676 chain 2886 chr17 81195210 + 41529704 41529753 SVA_D 2077 + 1080 1129 79518 49 chain 40089 chr17 81195210 + 41539713 41540169 L1PA4 6152 - 0 460 69199 13 0 3 97 0 1 346 chain 25367 chr17 81195210 + 41550214 41550521 AluSg7 307 - 3 307 102849 9 4 0 163 0 1 131 chain 25098 chr17 81195210 + 41556769 41557073 AluY 311 + 5 311 104300 95 0 1 30 1 2 178 chain 4548 chr17 81195210 + 41563770 41563825 U7 62 - 6 61 200233 55 chain 24021 chr17 81195210 + 41578005 41578287 AluSc 308 + 6 289 110211 15 0 1 267 chain 21028 chr17 81195210 + 41582517 41582787 AluSc5 308 + 21 291 123820 10 1 2 98 1 0 160 chain 8427 chr17 81195210 + 41613982 41614173 MER30 238 - 43 238 168698 24 8 0 30 16 38 29 3 0 15 6 0 22 22 21 16 chain 19963 chr17 81195210 + 41631343 41631614 AluSp 311 + 0 299 127261 53 23 51 195 chain 25222 chr17 81195210 + 41639051 41639351 AluSp 311 + 2 302 103626 300 chain 5147 chr17 81195210 + 41668465 41668597 MER39 703 - 237 380 193575 20 16 19 28 33 41 35 chain 9525 chr17 81195210 + 41671886 41672006 MER41B 635 - 0 120 162957 120 chain 46371 chr17 81195210 + 41681615 41682177 LTR19B 566 + 0 566 61709 135 0 2 34 0 1 41 2 1 82 1 2 215 0 1 52 chain 11219 chr17 81195210 + 41685741 41686011 MER66B 489 - 162 427 155351 39 1 0 29 9 10 18 4 0 17 0 2 5 2 0 9 41 0 9 0 41 50 22 21 15 chain 24515 chr17 81195210 + 41725558 41725862 AluY 311 + 4 310 107470 6 1 0 122 0 1 98 7 9 70 chain 4858 chr17 81195210 + 41736914 41737003 MER81 114 - 0 92 196694 12 7 8 25 5 0 6 0 7 34 chain 3411 chr17 81195210 + 41744085 41744121 MIRb 242 + 102 138 216910 36 chain 4386 chr17 81195210 + 41813294 41813356 L1MB7 1623 - 195 255 202125 6 1 0 47 1 0 7 chain 23680 chr17 81195210 + 41814183 41814462 AluSp 311 + 6 286 112151 172 0 1 107 chain 3480 chr17 81195210 + 41818127 41818168 MER57B1 401 + 294 335 215673 41 chain 3612 chr17 81195210 + 41819093 41819135 MSTA 426 - 1 43 213449 42 chain 8637 chr17 81195210 + 41863134 41863254 MER66B 489 - 276 437 167561 17 4 45 99 chain 530415 chr17 81195210 + 41869882 41875976 L1PA5 6144 - 17 6144 4137 399 0 1 451 1 5 1629 1 4 392 0 3 665 2 1 165 0 5 90 5 4 117 0 2 1024 9 0 988 0 5 8 13 34 135 chain 5820 chr17 81195210 + 41890593 41890665 MIR 256 + 37 109 186943 72 chain 24822 chr17 81195210 + 41904373 41904672 AluSp 311 - 2 300 105756 132 1 0 166 chain 22096 chr17 81195210 + 41951727 41952042 LTR3B_ 500 + 0 326 119808 60 0 7 18 0 1 64 11 12 5 0 3 8 6 0 124 0 5 19 chain 12342 chr17 81195210 + 42006934 42007086 LTR46 455 - 302 455 150854 146 0 1 6 chain 12003 chr17 81195210 + 42007091 42007342 LTR46-int 301 - 2 239 152187 37 53 40 58 31 30 72 chain 43619 chr17 81195210 + 42050714 42051609 LTR66 600 + 0 600 64662 154 1 5 6 317 0 103 0 1 42 1 0 37 4 0 51 4 10 54 3 0 26 0 16 67 0 3 25 chain 4199 chr17 81195210 + 42067918 42067964 MADE1 96 + 50 96 204548 46 chain 21576 chr17 81195210 + 42094685 42094944 AluY 311 + 0 265 121861 50 0 7 76 1 0 132 chain 45991 chr17 81195210 + 42096429 42097074 LTR66 600 - 0 600 62049 95 0 16 30 1 18 36 2 0 5 77 0 135 0 1 264 chain 38751 chr17 81195210 + 42099093 42100104 HERVL66-int 1251 - 373 1221 71078 32 22 17 17 7 0 26 0 3 28 2 0 19 3 4 4 1 0 51 1 0 32 14 12 39 12 9 26 12 1 62 1 0 9 0 4 81 0 1 25 28 20 11 26 11 12 59 23 44 28 0 64 16 10 19 7 0 7 45 13 14 5 9 11 2 1 11 6 4 17 34 26 19 chain 49412 chr17 81195210 + 42100198 42100793 LTR66 600 - 0 596 59448 37 3 1 80 0 3 6 2 1 15 0 1 41 2 0 150 0 1 175 0 1 84 chain 30092 chr17 81195210 + 42116731 42117048 AluYb8 318 - 1 318 84512 317 chain 23803 chr17 81195210 + 42141830 42142118 AluSz 310 + 12 300 111460 288 chain 22166 chr17 81195210 + 42142225 42142523 AluSc8 310 + 6 300 119516 126 0 3 128 12 11 16 6 0 10 chain 15143 chr17 81195210 + 42161261 42161502 AluSx 319 + 52 294 140933 123 41 40 60 0 2 17 chain 25560 chr17 81195210 + 42246288 42246585 AluY 311 + 0 292 101928 89 6 0 43 0 1 159 chain 25513 chr17 81195210 + 42252495 42252797 AluY 311 + 10 311 102169 113 2 0 158 0 1 29 chain 104368 chr17 81195210 + 42257413 42258944 SVA_F 1814 + 335 1544 35648 429 0 40 59 101 0 17 0 1 18 177 0 49 3 18 29 1 0 132 0 1 74 100 0 342 chain 2894 chr17 81195210 + 42257945 42258002 SVA_F 1814 + 855 913 115398 31 0 2 4 1 0 21 chain 12072 chr17 81195210 + 42258040 42258183 SVA_F 1814 + 966 1284 151893 12 0 176 120 1 0 10 chain 8308 chr17 81195210 + 42258502 42258602 SVA_F 1814 + 913 1026 126048 23 0 1 10 0 15 39 2 0 10 1 0 15 chain 24418 chr17 81195210 + 42263405 42263703 AluSp 311 + 0 295 107977 53 2 0 71 0 1 84 2 1 65 1 0 20 chain 4461 chr17 81195210 + 42286195 42286249 MIRb 242 + 62 118 201218 5 0 2 49 chain 25619 chr17 81195210 + 42301629 42301930 AluSp 311 - 14 311 101627 13 4 0 284 chain 24727 chr17 81195210 + 42303107 42303405 AluSp 311 - 0 300 106286 119 3 5 176 chain 171877 chr17 81195210 + 42314762 42316928 SVA_D 2077 + 4 2056 21830 29 1 9 334 0 4 162 0 40 316 25 24 22 100 13 79 0 2 275 52 0 75 0 1 4 9 8 56 48 0 464 0 20 115 chain 8557 chr17 81195210 + 42315651 42315751 SVA_D 2077 + 1209 1311 81255 10 0 1 43 0 1 47 chain 1788 chr17 81195210 + 42316105 42316139 SVA_D 2077 + 1186 1220 75252 34 chain 2448 chr17 81195210 + 42316301 42316337 SVA_D 2077 + 1056 1092 139665 36 chain 7445 chr17 81195210 + 42320055 42320175 MSTC 436 + 82 202 174472 60 8 0 15 8 16 29 chain 2915 chr17 81195210 + 42324442 42324475 MER5A1 166 - 31 64 226794 33 chain 2692 chr17 81195210 + 42327401 42327464 MIRc 230 - 98 162 230313 20 21 22 22 chain 3608 chr17 81195210 + 42344658 42344777 MIR 256 + 102 218 213502 37 66 63 16 chain 3931 chr17 81195210 + 42383245 42383289 MSTD 398 - 354 398 208389 44 chain 4831 chr17 81195210 + 42384482 42384540 U6 107 + 26 84 197003 58 chain 23725 chr17 81195210 + 42403615 42403908 AluSp 311 + 0 291 111907 35 0 1 4 2 1 91 2 0 159 chain 29730 chr17 81195210 + 42406586 42406902 AluYb8 318 - 2 318 85725 316 chain 81156 chr17 81195210 + 42414551 42415513 LTR13A 966 - 5 966 43108 195 1 0 213 1 0 425 0 1 127 chain 75332 chr17 81195210 + 42417793 42418667 MER11D 897 + 0 897 45857 593 1 24 280 chain 9716 chr17 81195210 + 42418863 42419036 L1MB8 1703 + 1129 1306 162002 76 37 39 41 0 2 19 chain 3592 chr17 81195210 + 42434361 42434413 MER3 215 + 91 136 213796 36 7 0 9 chain 131210 chr17 81195210 + 42446008 42447577 LTR12C 1709 + 0 1709 27814 376 3 23 251 0 119 66 1 2 275 1 0 5 3 1 106 0 4 394 4 3 84 chain 22177 chr17 81195210 + 42489305 42489570 AluSp 311 - 27 291 119458 152 1 0 112 chain 14428 chr17 81195210 + 42498555 42498733 AluSp 311 + 128 297 143125 162 9 0 7 chain 11437 chr17 81195210 + 42500010 42500145 AluYc3 301 - 165 301 154541 21 1 2 113 chain 25078 chr17 81195210 + 42517151 42517449 AluSp 311 - 12 311 104415 262 0 1 36 chain 16731 chr17 81195210 + 42559500 42560073 L1PA8 5853 + 5604 5853 136311 67 9 8 11 1 0 47 8 7 16 321 0 93 chain 4194 chr17 81195210 + 42588721 42588793 LTR9B 643 + 561 631 204634 27 17 15 28 chain 21939 chr17 81195210 + 42590524 42590837 AluYb9 318 + 0 313 120467 53 50 48 29 0 2 181 chain 157324 chr17 81195210 + 42601351 42603122 SVA_D 2077 + 0 2072 23689 19 5 0 16 3 1 627 0 77 21 3 0 123 0 183 285 0 49 223 0 2 446 chain 121259 chr17 81195210 + 42605150 42606586 LTR12C 1709 + 0 1709 30615 300 10 1 186 0 1 162 0 278 184 1 0 6 1 0 106 0 4 251 0 1 229 chain 4077 chr17 81195210 + 42612550 42612596 U5 65 + 4 50 206224 46 chain 122685 chr17 81195210 + 42641915 42643868 HUERS-P2-int 2744 - 8 2619 30169 21 2 0 12 2 0 5 2 0 9 1 0 33 3 0 40 1 0 15 4 2 8 1 0 11 2 1 25 9 6 4 1 0 103 0 2 16 0 13 15 24 26 24 1 0 90 5 0 5 15 0 275 1 731 145 5 0 282 12 0 15 0 2 47 5 3 243 4 6 4 1 0 32 1 0 6 0 1 5 22 20 105 60 38 12 1 0 9 1 0 5 4 1 73 30 27 16 4 3 19 chain 8055 chr17 81195210 + 42645272 42645391 L1MC1 2226 - 179 293 170726 54 2 0 13 5 2 45 chain 90642 chr17 81195210 + 42645411 42646847 LTR12C 1709 + 0 1709 39409 29 5 14 231 21 22 42 7 50 75 0 1 5 13 0 32 10 11 142 0 278 139 0 47 89 24 0 14 14 7 54 32 4 25 106 72 242 1 0 84 chain 24270 chr17 81195210 + 42654732 42655019 AluSp 311 + 2 300 108846 139 0 1 19 0 10 129 chain 23137 chr17 81195210 + 42663939 42664221 AluSc 308 - 26 308 114953 282 chain 5658 chr17 81195210 + 42676389 42676470 MER96B 391 - 85 170 188496 12 1 0 26 0 1 27 0 4 15 chain 4985 chr17 81195210 + 42703252 42703312 LTR37A 408 + 275 335 195309 60 chain 4298 chr17 81195210 + 42723827 42723875 MADE1 96 + 0 48 203246 48 chain 3831 chr17 81195210 + 42758282 42758415 MER5A 189 + 0 157 209906 21 75 99 37 chain 50872 chr17 81195210 + 42782261 42783123 L1PA17 2846 - 307 1215 58385 4 1 0 23 14 9 83 8 12 22 4 1 20 68 85 17 9 10 4 0 1 147 5 38 98 0 3 66 24 23 24 3 0 160 3 0 12 0 3 43 chain 21429 chr17 81195210 + 42823909 42824164 AluSx1 309 + 5 260 122411 255 chain 20525 chr17 81195210 + 42833080 42833320 AluSp 311 + 8 247 125556 5 1 0 234 chain 23932 chr17 81195210 + 42833346 42833665 AluY 311 + 10 310 110735 10 0 1 12 9 6 256 17 0 15 chain 6776 chr17 81195210 + 42866139 42866241 AluJb 308 - 60 164 179135 81 10 12 11 chain 3054 chr17 81195210 + 42871409 42871460 Tigger3c 601 + 437 493 223938 28 8 13 15 chain 21200 chr17 81195210 + 42872609 42872900 AluSg4 309 - 25 309 123215 71 25 19 117 1 0 77 chain 25569 chr17 81195210 + 42886937 42887234 AluSp 311 - 11 311 101877 206 0 3 91 chain 9700 chr17 81195210 + 42889740 42889870 MER85 139 + 0 139 162085 93 2 11 35 chain 26695 chr17 81195210 + 42893203 42893506 AluY 311 + 4 308 97336 128 0 1 175 chain 7918 chr17 81195210 + 42897075 42897225 L1MB3 1562 - 286 434 171534 33 2 0 42 1 0 4 32 33 36 chain 25506 chr17 81195210 + 42899739 42900032 AluSq2 311 + 12 305 102196 293 chain 20606 chr17 81195210 + 42902585 42902867 AluSp 311 + 0 295 125270 74 0 6 39 1 4 73 14 18 81 chain 8822 chr17 81195210 + 42910958 42911070 MER39 703 + 581 693 166544 112 chain 24505 chr17 81195210 + 42913723 42914016 AluSp 311 + 9 299 107515 119 3 0 171 chain 28303 chr17 81195210 + 42924519 42924815 AluYb8 318 + 0 296 91937 296 chain 3958 chr17 81195210 + 43030307 43030351 LTR16A 446 - 92 136 208011 44 chain 29335 chr17 81195210 + 43038972 43039278 AluYb9 318 + 0 306 87379 306 chain 24913 chr17 81195210 + 43123712 43124006 AluSx4 309 + 13 303 105259 9 4 0 281 chain 23343 chr17 81195210 + 43125740 43126024 AluSx4 309 + 12 300 113966 40 0 3 77 0 1 167 chain 8130 chr17 81195210 + 43139942 43140139 Tigger3a 397 + 144 326 170336 45 14 21 5 2 0 11 54 34 66 chain 4144 chr17 81195210 + 43140022 43140067 Tigger3a 397 - 139 184 205329 45 chain 8623 chr17 81195210 + 43148809 43148910 HY3 101 + 0 101 167620 101 chain 22979 chr17 81195210 + 43178718 43179007 AluSc 308 + 8 301 115719 81 0 1 56 2 5 150 chain 29672 chr17 81195210 + 43210887 43211197 AluYa5 310 - 0 310 85944 310 chain 4389 chr17 81195210 + 43220376 43220443 L1MC4 1079 - 965 1030 202088 46 6 4 15 chain 25835 chr17 81195210 + 43229644 43229941 AluSp 311 - 14 311 100726 297 chain 126028 chr17 81195210 + 43280348 43283564 L1PB1 5432 - 10 1981 29089 18 1 0 12 1 0 22 1 0 15 15 14 9 1 0 5 3 1 18 15 5 7 3 0 36 13 28 8 0 2 54 339 70 59 10 2 128 311 0 244 4 0 35 8 0 389 1 0 263 301 0 65 9 1 8 0 8 79 0 3 82 7 5 21 12 17 78 90 89 30 345 0 41 chain 21241 chr17 81195210 + 43282401 43282672 AluSc 308 - 9 287 123050 10 8 0 10 0 15 243 chain 3238 chr17 81195210 + 43312983 43313017 MIR 256 - 20 54 220269 34 chain 13729 chr17 81195210 + 43354521 43354675 L1PA4 6152 - 1 154 145507 5 1 0 148 chain 24786 chr17 81195210 + 43356505 43356783 AluSp 311 - 21 301 105962 156 0 2 122 chain 24562 chr17 81195210 + 43359004 43359301 AluSg7 307 - 2 298 107185 174 1 2 42 2 0 78 chain 7685 chr17 81195210 + 43404773 43404863 5S 121 - 31 121 173006 90 chain 3275 chr17 81195210 + 43416199 43416240 ORSL 269 - 35 76 219439 41 chain 114669 chr17 81195210 + 43425284 43426933 L1PB2 3958 + 2200 3838 32893 21 12 16 240 41 26 277 1 5 106 0 1 29 0 3 378 0 1 4 2 0 51 0 3 12 7 0 66 2 0 12 4 0 19 0 8 25 66 65 110 2 1 69 9 7 20 1 0 63 chain 7887 chr17 81195210 + 43442905 43442989 L1PA3long 6157 + 6072 6156 171764 84 chain 10710 chr17 81195210 + 43471223 43471380 MER115 684 + 502 662 157373 82 0 1 44 11 12 14 0 1 6 chain 9421 chr17 81195210 + 43501963 43502163 L1PB1 5432 + 5238 5412 163449 41 2 1 16 8 0 15 9 0 15 25 20 24 1 0 22 1 0 12 1 0 8 chain 22571 chr17 81195210 + 43511194 43511525 AluY 311 + 1 299 117714 81 26 7 41 1 2 156 15 0 11 chain 24499 chr17 81195210 + 43563305 43563593 AluY 311 + 5 293 107543 137 11 11 140 chain 3885 chr17 81195210 + 43602943 43602991 MIR 256 - 130 178 209093 48 chain 5617 chr17 81195210 + 43645212 43645280 L1MA4 2864 + 2537 2605 188905 68 chain 6122 chr17 81195210 + 43645837 43645971 MER58B 340 + 174 330 184258 19 6 11 30 3 2 16 23 41 37 chain 49656 chr17 81195210 + 43653990 43654574 LTR10C 591 + 0 591 59267 31 0 1 10 0 4 462 0 2 81 chain 9477 chr17 81195210 + 43658536 43658645 L1PA8A 6298 + 6178 6287 163183 109 chain 10842 chr17 81195210 + 43665130 43665322 L1PB1 5432 - 250 436 156820 15 3 1 7 2 0 3 2 0 9 1 0 9 1 0 23 3 0 10 1 2 20 0 4 83 chain 7600 chr17 81195210 + 43667233 43667361 MLT1A 405 - 40 168 173543 58 24 8 10 0 16 36 chain 34756 chr17 81195210 + 43672536 43672964 MLT2A1 477 - 1 477 76534 48 0 44 178 0 6 20 0 1 10 4 1 168 chain 22099 chr17 81195210 + 43680899 43681168 AluSg7 307 + 29 299 119792 102 1 2 166 chain 25354 chr17 81195210 + 43688014 43688320 AluSp 311 - 7 311 102926 125 0 1 46 3 0 132 chain 34969 chr17 81195210 + 43705187 43705734 MER1A 529 - 0 529 76230 62 1 0 7 7 0 5 4 0 22 3 4 69 1 0 29 0 1 83 0 1 23 4 6 95 6 0 79 31 27 16 chain 26427 chr17 81195210 + 43709030 43709337 AluY 311 + 3 311 98312 129 0 1 178 chain 7419 chr17 81195210 + 43748729 43748815 LTR12F 595 - 506 592 174662 86 chain 46053 chr17 81195210 + 43750993 43751524 L1PA5 6144 - 12 544 61992 485 0 1 46 chain 26398 chr17 81195210 + 43762288 43762588 L1PA4 6152 - 1 301 98416 195 0 1 63 1 0 41 chain 29203 chr17 81195210 + 43820480 43820853 THE1B 368 - 0 368 88035 75 1 0 99 2 0 21 3 1 172 chain 15878 chr17 81195210 + 43836517 43836722 AluSc8 310 + 82 290 138714 51 9 12 145 chain 3296 chr17 81195210 + 43850690 43850801 LTR12F 595 + 215 282 219072 25 43 0 11 9 9 6 1 0 16 chain 17288 chr17 81195210 + 43889358 43889603 MER2 342 - 13 253 134808 166 11 5 42 0 1 26 chain 9044 chr17 81195210 + 43915880 43915981 MER9a2 513 + 363 464 165355 101 chain 36315 chr17 81195210 + 43939269 43939885 LTR12F 595 - 0 595 74485 104 16 20 19 24 17 43 28 0 4 1 0 169 0 9 13 1 34 17 2 0 16 26 1 25 6 1 71 0 1 31 chain 49432 chr17 81195210 + 43942747 43943443 MER4A 717 - 25 717 59432 42 10 12 148 3 1 40 0 1 5 5 4 45 1 2 269 5 0 42 0 1 63 6 5 12 chain 4354 chr17 81195210 + 43952502 43952553 L1MC1 2226 - 183 234 202529 51 chain 11557 chr17 81195210 + 43955704 43956236 Tigger3b 1229 - 126 346 154077 68 8 9 47 359 46 50 chain 25204 chr17 81195210 + 43965804 43966156 THE1C 375 - 7 375 103716 18 1 0 118 9 10 18 0 11 12 1 2 33 0 4 142 chain 24569 chr17 81195210 + 43980805 43981097 AluY 311 + 2 299 107149 91 2 6 33 0 1 166 chain 25083 chr17 81195210 + 43990437 43990772 THE1B 368 - 0 342 104390 75 1 0 89 10 4 28 1 0 113 0 15 18 chain 2947 chr17 81195210 + 44029384 44029415 U2 167 + 0 31 226121 31 chain 68738 chr17 81195210 + 44033967 44034734 L1PA5 6144 - 3 769 48930 250 1 0 516 chain 14409 chr17 81195210 + 44041575 44041735 L1PA5 6144 - 0 160 143184 160 chain 28270 chr17 81195210 + 44083506 44083952 L1MA3 4352 + 3781 4217 92038 194 0 2 54 0 9 41 69 48 88 chain 26310 chr17 81195210 + 44096395 44096758 THE1B 368 - 0 368 98789 128 1 0 10 7 6 10 0 4 10 0 3 28 1 0 99 8 9 61 chain 8583 chr17 81195210 + 44097878 44098001 THE1B 368 - 0 125 167830 51 4 6 68 chain 16215 chr17 81195210 + 44098030 44098235 THE1B 368 - 167 368 137706 5 3 0 27 1 0 169 chain 5974 chr17 81195210 + 44226789 44226965 MER58A 224 - 0 176 185479 44 0 1 11 89 88 32 chain 13523 chr17 81195210 + 44231715 44231945 AluJb 308 - 78 306 146269 74 52 51 33 1 0 70 chain 23831 chr17 81195210 + 44258799 44259087 AluSq10 312 - 16 302 111308 168 2 0 118 chain 16251 chr17 81195210 + 44288665 44288878 MER30 238 - 9 238 137612 69 0 1 32 4 19 108 chain 8309 chr17 81195210 + 44292437 44292537 HY3 101 - 1 101 169344 100 chain 3203 chr17 81195210 + 44306667 44306703 tRNA-Tyr-TAC 38 + 1 37 220896 36 chain 60088 chr17 81195210 + 44314941 44315588 SVA_F 1814 - 1 887 52779 632 0 239 15 chain 33152 chr17 81195210 + 44327690 44328118 MLT2A1 477 + 0 476 78984 169 4 1 9 0 1 20 0 6 178 12 56 36 chain 122711 chr17 81195210 + 44329741 44331154 SVA_D 2077 - 0 2077 30158 145 0 1 370 0 429 71 0 1 6 16 113 14 1 46 281 0 40 31 0 39 398 0 11 67 0 1 13 chain 3752 chr17 81195210 + 44333344 44333410 MLT1A0 366 + 25 92 211114 21 12 13 33 chain 11308 chr17 81195210 + 44335874 44336070 L1PB1 5432 + 4996 5182 155037 107 1 2 10 3 0 19 1 0 13 1 0 9 2 0 3 2 0 7 3 1 15 chain 25899 chr17 81195210 + 44337986 44338284 AluSp 311 - 9 307 100440 298 chain 24125 chr17 81195210 + 44352262 44352549 AluSp 311 - 16 303 109611 287 chain 80706 chr17 81195210 + 44360979 44361947 LTR5_Hs 974 - 0 974 43306 103 2 0 37 5 12 536 0 1 285 chain 5964 chr17 81195210 + 44365990 44366060 MER41B 635 - 385 465 185574 54 0 10 16 chain 51697 chr17 81195210 + 44393979 44394544 SVA_C 1631 - 3 566 57817 8 2 0 555 chain 3977 chr17 81195210 + 44398168 44398216 MIR 256 + 78 126 207718 48 chain 10806 chr17 81195210 + 44399032 44399302 AluSq2 311 + 176 306 156965 15 140 0 115 chain 22692 chr17 81195210 + 44425086 44425374 AluSc 308 + 7 297 117113 71 2 1 62 1 4 152 chain 44592 chr17 81195210 + 44543656 44544195 L1PA7 6471 - 6 579 63490 150 1 0 205 0 9 89 0 2 30 0 24 64 chain 30443 chr17 81195210 + 44565372 44565784 MER1A 529 + 0 429 83547 16 9 21 43 8 12 6 0 1 330 chain 6892 chr17 81195210 + 44567523 44567686 MER58A 224 - 35 214 178256 21 49 50 74 7 22 12 chain 5617 chr17 81195210 + 44572433 44572501 L1MA4 2864 - 259 327 188906 68 chain 76006 chr17 81195210 + 44611563 44612414 SVA_C 1631 - 3 984 45475 8 2 0 583 1 0 19 1 0 38 0 134 199 chain 3977 chr17 81195210 + 44616023 44616071 MIR 256 + 78 126 207717 48 chain 10806 chr17 81195210 + 44616886 44617156 AluSq2 311 + 176 306 156964 15 140 0 115 chain 22692 chr17 81195210 + 44643021 44643309 AluSc 308 + 7 297 117112 71 2 1 62 1 4 152 chain 10900 chr17 81195210 + 44678141 44678279 Tigger3a 397 + 217 385 156590 52 0 30 86 chain 44387 chr17 81195210 + 44761348 44761887 L1PA7 6471 - 6 579 63703 150 1 0 205 0 9 89 0 2 30 0 24 64 chain 30443 chr17 81195210 + 44783086 44783498 MER1A 529 + 0 429 83546 16 9 21 43 8 12 6 0 1 330 chain 17401 chr17 81195210 + 44838063 44838383 Tigger4b 360 + 3 338 134510 59 15 16 30 42 37 26 5 6 42 0 2 72 1 17 28 chain 23310 chr17 81195210 + 44857880 44858151 AluYc3 301 + 8 280 114154 105 1 2 165 chain 27424 chr17 81195210 + 44882064 44882494 LTR12F 595 + 11 595 94897 80 5 18 5 1 0 32 6 94 46 0 64 34 9 1 7 11 0 100 0 9 94 chain 73043 chr17 81195210 + 44916904 44918270 L1PA6 6164 - 3 905 47006 147 0 5 7 3 0 70 0 4 137 483 0 206 2 10 259 0 5 52 chain 2779 chr17 81195210 + 44935590 44935725 L1ME1 1623 - 653 787 229025 26 89 88 20 chain 3987 chr17 81195210 + 44976246 44976458 L1MB7 1623 + 1307 1491 207575 16 1 0 4 61 57 28 62 40 23 4 3 13 chain 32482 chr17 81195210 + 44994444 44995094 MSTD-int 1705 - 0 608 80062 18 3 0 53 1 0 106 0 2 189 130 142 51 0 14 8 14 0 8 52 0 17 chain 110850 chr17 81195210 + 44998615 44999859 L1PA5 6144 + 4900 6144 33983 1244 chain 218887 chr17 81195210 + 45030410 45032864 L1PA4 6152 - 0 2484 17952 6 2 0 10 6 4 621 0 9 194 0 4 612 0 10 324 0 8 198 0 3 481 chain 3828 chr17 81195210 + 45047387 45047490 MIRb 242 + 93 196 209956 16 1 0 6 0 1 15 29 32 9 3 0 24 chain 52793 chr17 81195210 + 45081089 45081692 L1PA5 6144 - 1 604 57138 603 chain 30283 chr17 81195210 + 45084433 45085204 MER75 514 - 0 448 83984 24 0 2 68 332 4 95 4 5 103 14 15 107 0 1 24 chain 122676 chr17 81195210 + 45133789 45135213 LTR12C 1709 - 0 1709 30172 444 0 2 35 0 4 107 2 0 6 1 0 157 0 280 142 0 2 530 chain 10953 chr17 81195210 + 45148389 45148544 MER4D 903 + 311 469 156390 61 15 18 79 chain 39241 chr17 81195210 + 45183791 45184268 LTR17 781 - 27 526 70399 21 1 23 179 0 1 202 2 1 72 chain 5583 chr17 81195210 + 45185486 45185660 L1MC4 1079 - 340 558 189243 46 0 1 17 90 133 21 chain 25139 chr17 81195210 + 45185664 45185961 AluSp 311 - 15 311 104074 189 1 0 107 chain 4932 chr17 81195210 + 45195874 45195953 MADE1 96 + 0 96 195905 36 7 24 36 chain 24397 chr17 81195210 + 45210804 45211099 AluSp 311 - 11 301 108092 231 0 1 17 6 0 41 chain 27270 chr17 81195210 + 45224485 45224769 AluYg6 310 + 1 285 95372 284 chain 2707 chr17 81195210 + 45225905 45225945 L1MEc 1507 + 1011 1050 230142 14 2 1 24 chain 22159 chr17 81195210 + 45276328 45276621 AluY 311 + 10 297 119551 108 9 0 11 1 4 164 chain 24156 chr17 81195210 + 45301505 45301831 THE1B 368 - 0 368 109449 39 15 23 76 1 0 36 0 2 28 1 0 51 0 19 35 0 15 44 chain 5474 chr17 81195210 + 45314595 45314659 MER52D 1964 - 757 829 190270 41 0 8 23 chain 14112 chr17 81195210 + 45319376 45319564 L1PB3 3668 - 191 378 144168 83 7 6 98 chain 29541 chr17 81195210 + 45345229 45345612 THE1C 375 - 0 375 86451 25 1 0 230 3 0 93 3 0 8 1 0 19 chain 119965 chr17 81195210 + 45345623 45347201 THE1C-int 1605 - 12 1605 31070 57 5 4 4 0 1 227 0 3 271 2 1 14 5 6 48 10 11 385 0 6 100 8 12 401 0 1 41 chain 5111 chr17 81195210 + 45423664 45423879 L1MB1 2102 - 95 288 193960 46 108 108 21 24 2 16 chain 27839 chr17 81195210 + 45427121 45427418 AluYb8 318 - 0 297 93566 297 chain 16271 chr17 81195210 + 45428698 45428909 L1PB4 2604 - 233 442 137547 128 2 0 81 chain 135887 chr17 81195210 + 45431226 45432936 L1PBa 3878 - 1172 2885 26863 358 14 19 256 1 6 119 0 3 44 0 1 97 4 0 182 1 0 116 10 0 44 0 4 101 0 1 267 2 1 94 chain 20691 chr17 81195210 + 45434822 45435069 AluSq2 311 - 51 300 124999 29 0 1 96 0 1 122 chain 113271 chr17 81195210 + 45436993 45438230 L1PA3long 6157 - 0 1238 33292 946 0 1 291 chain 75602 chr17 81195210 + 45439431 45440437 LTR13 1007 + 0 1007 45714 72 11 9 300 4 5 109 16 4 152 0 11 18 26 29 106 3 4 156 2 1 31 chain 348048 chr17 81195210 + 45457457 45462138 L1PA7 6471 - 10 4435 11662 567 0 1 186 1 0 7 1 3 13 280 0 56 0 5 132 0 1 186 1 0 5 5 6 149 0 2 55 7 0 138 0 2 770 0 73 50 0 1 500 0 4 449 1 5 108 62 1 253 0 20 69 20 3 32 1 0 4 0 1 60 3 29 154 17 12 18 43 16 77 0 1 201 chain 4367 chr17 81195210 + 45461128 45461178 L1PA7 6471 - 3425 3475 202357 50 chain 158234 chr17 81195210 + 45474374 45476216 SVA_D 2077 + 15 2061 23559 23 15 31 736 39 0 111 5 42 75 13 16 52 0 78 51 0 1 72 0 98 328 0 10 322 chain 1308 chr17 81195210 + 45475148 45475184 SVA_D 2077 + 806 842 193062 36 chain 37178 chr17 81195210 + 45492353 45492763 L1PA3long 6157 + 5747 6157 73268 410 chain 154194 chr17 81195210 + 45497281 45498998 SVA_D 2077 + 0 2067 24075 24 0 2 241 0 1 648 5 269 156 7 72 5 0 1 310 0 10 52 1 8 268 chain 8528 chr17 81195210 + 45526682 45526882 L1PB1 5432 + 5245 5422 168145 36 3 0 15 1 0 4 46 32 14 2 0 24 2 1 20 1 0 13 1 0 18 chain 29469 chr17 81195210 + 45545293 45545664 THE1C 375 + 0 375 86760 186 0 1 14 0 3 171 chain 23874 chr17 81195210 + 45552647 45552932 AluSp 311 + 3 288 111064 285 chain 3883 chr17 81195210 + 45566417 45566464 MER66B 489 + 291 337 209132 22 1 0 24 chain 23628 chr17 81195210 + 45566958 45567259 AluSp 311 + 0 296 112420 37 1 0 20 0 4 33 8 0 202 chain 25239 chr17 81195210 + 45578455 45578747 AluY 311 + 1 288 103535 126 5 0 161 chain 6448 chr17 81195210 + 45606301 45606417 MER33 330 + 143 268 181650 67 14 26 5 1 0 14 3 1 12 chain 58904 chr17 81195210 + 45633441 45634107 SVA_C 1631 - 1 659 53453 20 1 0 131 8 2 459 1 0 46 chain 7960 chr17 81195210 + 45634778 45634878 HY3 101 + 0 100 171274 100 chain 6424 chr17 81195210 + 45638931 45639005 MER21A 919 + 60 134 181831 74 chain 17581 chr17 81195210 + 45670139 45670351 L1PA6 6164 - 20 228 134050 54 4 0 154 chain 12849 chr17 81195210 + 45671582 45671772 Tigger3b 1229 - 358 549 148853 100 4 1 47 6 10 33 chain 24213 chr17 81195210 + 45719746 45720036 AluSp 311 + 11 298 109132 121 3 0 166 chain 23410 chr17 81195210 + 45725793 45726088 AluSc 308 - 12 308 113596 229 0 1 66 chain 3444 chr17 81195210 + 45781400 45781438 MER94 134 - 35 73 216293 38 chain 14342 chr17 81195210 + 45853837 45854046 Tigger3a 397 - 70 340 143413 7 0 2 161 23 82 18 chain 28153 chr17 81195210 + 45856209 45856536 L1PA6 6164 - 17 344 92448 327 chain 23147 chr17 81195210 + 45874868 45875207 THE1B 368 + 0 368 114906 44 0 15 113 1 0 26 13 16 10 8 16 47 1 5 76 chain 14603 chr17 81195210 + 45968632 45968826 L1PA6 6164 - 2 192 142572 153 1 0 11 12 9 17 chain 24996 chr17 81195210 + 46017976 46018272 AluSx1 309 + 3 300 104817 187 0 1 109 chain 23424 chr17 81195210 + 46149878 46150155 AluY 311 + 11 293 113506 59 0 3 58 0 2 160 chain 7779 chr17 81195210 + 46166039 46166134 U6 107 - 0 95 172423 95 chain 21042 chr17 81195210 + 46172673 46172927 AluSp 311 + 4 290 123759 168 0 32 86 chain 19894 chr17 81195210 + 46179545 46179815 AluSq2 311 + 5 277 127505 119 0 1 8 0 1 73 16 16 54 chain 32113 chr17 81195210 + 46180360 46180940 LTR12F 595 + 0 595 80668 97 13 48 32 6 47 16 18 0 43 20 6 98 54 35 20 10 0 153 chain 21917 chr17 81195210 + 46191527 46191805 AluSp 311 - 10 301 120555 44 5 19 203 1 0 25 chain 22502 chr17 81195210 + 46193348 46193621 AluSg7 307 + 1 285 118020 22 0 8 226 1 2 14 0 2 10 chain 26170 chr17 81195210 + 46236040 46236347 AluYf4 310 + 0 306 99326 259 6 5 42 chain 8075 chr17 81195210 + 46274041 46274137 U6 107 - 0 96 170613 96 chain 5606 chr17 81195210 + 46322976 46323045 MIR 256 + 67 136 189020 69 chain 23531 chr17 81195210 + 46347173 46347486 AluSp 311 + 0 295 112954 64 19 0 141 1 2 88 chain 26104 chr17 81195210 + 46406784 46407091 AluSq10 312 + 0 305 99606 125 2 0 180 chain 21524 chr17 81195210 + 46420104 46420371 AluY 311 + 39 300 122059 93 0 1 157 7 0 10 chain 15096 chr17 81195210 + 46443200 46443398 MER107 203 + 0 203 141049 55 0 1 98 1 0 5 4 9 35 chain 12632 chr17 81195210 + 46459564 46459707 L1PA5 6144 + 5988 6132 149719 8 0 1 135 chain 7669 chr17 81195210 + 46474220 46474302 L1PA2 6032 + 5950 6032 173109 82 chain 4107 chr17 81195210 + 46520630 46520676 MADE1 96 - 50 96 205821 46 chain 56534 chr17 81195210 + 46526465 46527214 L1PA8 5853 + 5103 5853 54833 88 0 1 17 10 1 315 0 1 38 1 0 44 2 0 65 17 15 47 7 6 11 1 15 86 chain 28644 chr17 81195210 + 46551247 46551602 THE1A 353 - 0 353 90542 75 1 0 168 4 3 107 chain 8024 chr17 81195210 + 46551607 46551700 THE1A-int 1579 - 5 99 170919 70 0 1 23 chain 9139 chr17 81195210 + 46556458 46556558 HY3 101 + 0 100 164862 100 chain 12942 chr17 81195210 + 46562831 46563030 L1MB2 1706 - 293 489 148458 141 29 26 29 chain 21010 chr17 81195210 + 46638299 46638545 AluSp 311 + 38 285 123873 19 0 1 227 chain 27098 chr17 81195210 + 46685502 46685809 AluY 311 + 0 306 95948 15 1 0 291 chain 3948 chr17 81195210 + 46751575 46751623 L1MB7 1623 + 1078 1127 208153 27 0 1 21 chain 16081 chr17 81195210 + 46777585 46777799 L1PA7 6471 + 6251 6468 138110 14 10 12 10 0 1 180 chain 4253 chr17 81195210 + 46874134 46874258 MIRb 242 + 18 142 203839 24 27 25 22 26 28 25 chain 4391 chr17 81195210 + 46900083 46900177 MER31B 477 + 12 118 202077 42 0 13 11 27 26 14 chain 34344 chr17 81195210 + 46902898 46903339 MER41B 635 - 184 635 77134 222 0 9 90 4 5 125 chain 22230 chr17 81195210 + 46909477 46909761 AluSx1 309 + 5 288 119209 51 4 3 229 chain 36948 chr17 81195210 + 46915350 46915812 LTR2 463 - 0 463 73586 88 14 15 360 chain 20542 chr17 81195210 + 46915816 46916081 AluY 311 + 22 288 125497 110 3 4 152 chain 29322 chr17 81195210 + 46976147 46976458 AluYa5 310 + 0 310 87421 123 1 0 187 chain 24027 chr17 81195210 + 46990705 46991014 AluSc 308 - 12 308 110174 7 8 0 6 5 0 283 chain 17512 chr17 81195210 + 47023833 47024092 AluSz 310 + 3 260 134232 122 33 31 104 chain 21611 chr17 81195210 + 47024823 47025085 AluSx4 309 + 9 297 121733 106 0 26 156 chain 12052 chr17 81195210 + 47026726 47026882 U1 164 - 6 164 151974 68 6 8 82 chain 23675 chr17 81195210 + 47029492 47029770 AluSp 311 - 32 310 112177 278 chain 22407 chr17 81195210 + 47040195 47040480 AluY 311 + 11 291 118456 112 2 0 146 8 5 17 chain 24991 chr17 81195210 + 47041245 47041550 AluY 311 + 10 311 104849 29 0 1 32 0 3 51 8 0 185 chain 10689 chr17 81195210 + 47055644 47055793 MER41B 635 + 486 635 157459 92 7 8 29 1 0 20 chain 42836 chr17 81195210 + 47055885 47057111 MER41-int 2638 + 1371 1947 65610 174 0 2 95 331 0 30 1 0 24 0 2 114 2 0 64 2 0 26 326 8 37 chain 8141 chr17 81195210 + 47113713 47113811 U6 107 + 0 101 170284 44 0 3 54 chain 30427 chr17 81195210 + 47134556 47134874 AluYb8 318 + 0 318 83595 318 chain 3078 chr17 81195210 + 47141158 47141195 MER66B 489 - 152 194 223367 15 0 5 22 chain 10404 chr17 81195210 + 47153732 47153856 MER41B 635 - 0 124 158671 124 chain 5351 chr17 81195210 + 47153857 47153922 MER41B 635 + 481 547 191531 27 0 1 38 chain 8431 chr17 81195210 + 47160892 47161004 LTR23 429 - 28 138 168683 86 2 0 24 chain 10635 chr17 81195210 + 47190601 47190758 L1MA5 2750 - 111 269 157669 6 0 2 47 2 0 5 3 5 12 1 0 81 chain 7099 chr17 81195210 + 47193542 47193641 LTR44 473 - 154 250 176758 13 2 0 23 1 0 60 chain 43982 chr17 81195210 + 47201118 47202425 LTR19-int 1103 - 71 1004 64226 16 79 49 44 2 1 17 2 0 5 16 3 20 41 16 9 1 5 21 1 0 4 2 0 17 4 1 10 1 0 10 34 5 57 164 64 13 1 0 50 14 0 19 4 0 76 9 8 39 6 1 88 3 4 21 0 2 13 5 0 13 5 0 38 60 26 26 30 0 11 30 0 7 1 0 50 20 0 4 1 0 18 1 0 7 22 0 25 chain 80400 chr17 81195210 + 47202928 47203876 SVA_D 2077 + 457 2077 43429 40 0 193 61 0 117 53 0 37 5 0 227 113 0 98 676 chain 30103 chr17 81195210 + 47222091 47222535 MLT2A1 477 - 0 477 84485 19 1 0 17 34 61 207 8 12 22 0 1 88 0 2 48 chain 96222 chr17 81195210 + 47222535 47223654 HERVL-int 5654 - 0 1129 37757 219 0 1 142 0 3 524 5 11 229 chain 74506 chr17 81195210 + 47227453 47228289 SVA_D 2077 + 1234 2067 46271 154 0 1 4 9 8 44 1 0 10 2 0 612 chain 39589 chr17 81195210 + 47248006 47248515 MER9a3 513 - 0 513 69905 78 0 1 178 1 0 64 10 11 70 4 5 86 0 2 18 chain 383342 chr17 81195210 + 47248516 47253015 HERVK9-int 4720 - 1 4521 10658 9 0 1 697 15 11 604 0 10 80 1 0 7 0 1 818 16 17 533 0 1 30 0 11 259 1 0 461 1 2 825 0 1 142 chain 36150 chr17 81195210 + 47253563 47254052 MER9a3 513 - 0 513 74709 79 0 1 175 1 0 17 0 8 41 12 13 68 7 8 50 0 12 21 0 2 18 chain 5794 chr17 81195210 + 47258379 47258451 MER30 238 - 133 205 187215 72 chain 21640 chr17 81195210 + 47259687 47260342 THE1B 368 + 0 368 121616 41 0 16 73 0 1 40 324 0 27 30 42 66 5 13 49 chain 81578 chr17 81195210 + 47262501 47263538 THE1B-int 1605 + 519 1592 42937 62 0 1 539 0 19 62 3 4 151 6 5 49 0 16 165 chain 19139 chr17 81195210 + 47263551 47263865 THE1B 368 + 1 348 129713 43 5 20 108 1 0 6 0 1 19 8 6 10 17 29 63 5 13 29 chain 5440 chr17 81195210 + 47269889 47269959 tRNA-Gln-CAA 69 + 0 69 190613 55 2 1 13 chain 40599 chr17 81195210 + 47338820 47339650 MER41A 554 - 0 529 68443 69 11 16 311 298 0 53 8 0 80 chain 22480 chr17 81195210 + 47348923 47349205 AluSp 311 + 1 294 118109 20 0 9 111 0 1 62 1 2 88 chain 3484 chr17 81195210 + 47349394 47349435 MLT2C1 407 - 0 41 215617 41 chain 24812 chr17 81195210 + 47354863 47355161 AluSp 311 - 15 311 105826 31 1 0 225 1 0 40 chain 11490 chr17 81195210 + 47364276 47364401 AluSp 311 + 171 296 154331 125 chain 21841 chr17 81195210 + 47399991 47400248 AluY 311 + 26 284 120849 106 0 1 151 chain 4044 chr17 81195210 + 47402052 47402096 Tigger1 2417 - 1762 1806 206751 44 chain 24434 chr17 81195210 + 47443813 47444098 AluSp 311 - 26 311 107889 285 chain 9223 chr17 81195210 + 47470166 47470272 LTR9B 643 - 85 192 164437 87 0 1 19 chain 24008 chr17 81195210 + 47493087 47493367 AluSp 311 - 24 305 110284 113 1 0 54 0 1 52 0 1 60 chain 7173 chr17 81195210 + 47494107 47494204 HY1 111 - 0 103 176251 73 1 7 23 chain 22996 chr17 81195210 + 47494313 47494600 AluSp 311 + 0 285 115638 41 0 2 85 4 0 157 chain 134812 chr17 81195210 + 47496177 47497816 SVA_A 1864 - 0 1849 27055 145 8 0 238 0 3 151 38 84 100 1 0 45 2 0 77 4 1 109 3 73 75 1 0 73 2 0 40 0 116 509 8 0 10 chain 11816 chr17 81195210 + 47608923 47609120 L1MC1 2226 - 885 1067 152959 132 13 12 28 14 0 10 chain 36634 chr17 81195210 + 47637432 47641127 Tigger1 2417 + 50 2089 74052 137 2 0 7 1922 1306 48 1070 39 58 30 27 8 0 2 50 0 6 48 9 10 198 74 61 34 chain 24846 chr17 81195210 + 47667553 47667842 AluSp 311 - 22 311 105644 289 chain 22579 chr17 81195210 + 47700372 47700661 AluSp 311 - 15 303 117676 14 6 7 66 2 0 201 chain 4871 chr17 81195210 + 47702407 47702497 MER5A 189 - 55 150 196578 12 0 1 26 20 24 32 chain 24675 chr17 81195210 + 47733180 47733473 AluSp 311 - 20 311 106586 159 2 0 132 chain 2743 chr17 81195210 + 47744568 47744605 L1MB2 1706 + 1034 1068 229562 24 3 0 10 chain 4829 chr17 81195210 + 47748654 47748724 MADE1 96 - 2 94 197027 38 4 26 28 chain 25284 chr17 81195210 + 47756171 47756456 AluYc 301 + 8 299 103293 112 0 2 132 0 4 41 chain 24344 chr17 81195210 + 47763766 47764052 AluY 311 + 13 293 108398 118 6 0 162 chain 20588 chr17 81195210 + 47779817 47780116 AluSp 311 + 6 290 125339 53 1 0 159 41 27 45 chain 23578 chr17 81195210 + 47811672 47811959 AluYk4 311 + 0 287 112698 116 0 5 5 5 0 161 chain 6820 chr17 81195210 + 47822002 47822095 MER2 342 - 141 229 178789 79 5 0 9 chain 25148 chr17 81195210 + 47846778 47847072 AluY 311 + 0 288 104007 133 1 0 36 5 0 119 chain 4314 chr17 81195210 + 47952455 47952518 MIR 256 + 70 134 203040 46 4 5 13 chain 25208 chr17 81195210 + 48022730 48023030 AluY 311 + 0 295 103694 59 4 0 67 1 0 169 chain 28547 chr17 81195210 + 48037405 48037708 AluYh9 303 - 0 303 90982 303 chain 3602 chr17 81195210 + 48062316 48062357 MIR3 191 + 70 111 213611 41 chain 7431 chr17 81195210 + 48064505 48064620 MIRb 242 - 58 172 174564 33 13 12 69 chain 7713 chr17 81195210 + 48142940 48143034 THE1B 368 - 81 175 172849 94 chain 20463 chr17 81195210 + 48233368 48233634 AluY 311 + 25 290 125720 72 0 2 28 2 0 134 12 11 18 chain 7684 chr17 81195210 + 48290795 48290969 MIR 256 - 32 199 173016 21 62 55 91 chain 10107 chr17 81195210 + 48303927 48304036 THE1B-int 1605 - 1333 1442 160063 109 chain 12120 chr17 81195210 + 48305737 48305884 MLT2A2 560 + 413 560 151740 147 chain 14845 chr17 81195210 + 48329619 48329796 Tigger1 2417 - 1273 1450 141796 177 chain 15749 chr17 81195210 + 48332796 48333208 LTR47A 437 - 0 436 139114 41 13 0 3 7 0 63 156 141 22 3 62 104 chain 44579 chr17 81195210 + 48396666 48397212 MER41A 554 - 0 554 63499 447 0 1 13 5 6 23 0 6 58 chain 16266 chr17 81195210 + 48400800 48401326 MER30 238 + 0 235 137559 104 316 25 106 chain 5765 chr17 81195210 + 48418051 48418136 LTR54B 464 + 13 96 187489 57 7 5 21 chain 8625 chr17 81195210 + 48463507 48463607 HY3 101 - 1 101 167610 100 chain 9555 chr17 81195210 + 48470313 48470461 MER30 238 + 47 230 162810 61 2 0 5 1 25 8 0 16 28 3 0 40 chain 56902 chr17 81195210 + 48476382 48477084 LTR17 781 - 9 781 54592 40 1 23 106 0 49 227 1 0 327 chain 180072 chr17 81195210 + 48477397 48480255 HERV17-int 4347 - 0 4334 20985 69 0 1 318 22 16 208 0 1672 93 0 1 330 6 7 18 315 0 142 1 2 52 1 0 64 1 0 42 0 4 151 0 1 11 4 0 311 313 0 69 0 430 64 0 1 131 1 0 26 2 0 7 0 9 21 1 0 47 3 2 14 chain 59250 chr17 81195210 + 48482331 48483061 LTR17 781 - 2 780 53250 173 1 50 226 4 3 326 chain 40569 chr17 81195210 + 48490048 48490511 LTR2 463 - 0 463 68481 463 chain 425620 chr17 81195210 + 48490511 48495603 Harlequin-int 5206 - 0 5081 9404 669 6 8 506 9 1 152 1 4 62 7 8 160 0 1 313 17 1 23 2 0 759 0 1 17 1 0 5 0 1 543 7 0 11 1 9 744 0 3 527 1 0 195 2 0 106 2 1 66 0 5 82 6 8 90 chain 40279 chr17 81195210 + 48497374 48497828 LTR2 463 - 8 463 68904 338 0 1 116 chain 5979 chr17 81195210 + 48497947 48498042 MLT1D 503 + 401 497 185435 59 9 10 27 chain 5076 chr17 81195210 + 48526686 48526762 L1MB8 1703 - 188 266 194333 28 2 4 46 chain 6670 chr17 81195210 + 48555304 48555386 MER70A 477 - 396 477 179907 35 1 0 46 chain 3457 chr17 81195210 + 48578341 48578384 MER53 195 - 14 58 216041 8 0 1 35 chain 3904 chr17 81195210 + 48729100 48729144 MER34 540 - 365 409 208787 44 chain 25190 chr17 81195210 + 48786947 48787259 AluSp 311 - 4 311 103795 29 4 1 145 2 0 132 chain 26182 chr17 81195210 + 48796128 48796426 AluSp 311 - 3 301 99273 298 chain 24223 chr17 81195210 + 48812319 48812617 AluSp 311 + 6 308 109070 8 0 4 290 chain 22508 chr17 81195210 + 48840263 48840548 AluSc 308 - 16 299 117997 266 8 6 11 chain 4230 chr17 81195210 + 48847447 48847497 L1MC4 1079 - 958 1008 204167 50 chain 3348 chr17 81195210 + 48850331 48850370 MADE1 96 - 57 96 218082 39 chain 23897 chr17 81195210 + 48875117 48875387 L1PA5 6144 + 5872 6144 110917 258 1 3 11 chain 25312 chr17 81195210 + 48946786 48947079 AluSp 311 + 4 297 103162 293 chain 29467 chr17 81195210 + 48971500 48971810 AluYa5 310 - 0 310 86771 310 chain 5331 chr17 81195210 + 48979193 48979351 MER3 215 - 6 168 191715 33 82 86 43 chain 4336 chr17 81195210 + 49004906 49005072 MIR 256 + 70 235 202758 39 102 101 25 chain 13031 chr17 81195210 + 49011017 49011248 Tigger3a 397 - 16 258 148125 92 55 66 84 chain 20218 chr17 81195210 + 49013873 49014098 L1PA3long 6157 + 5932 6157 126477 225 chain 9636 chr17 81195210 + 49065603 49065731 MER85 139 - 0 139 162416 23 3 0 9 0 14 93 chain 26499 chr17 81195210 + 49071432 49071787 THE1A 353 + 0 353 98045 110 1 0 155 10 11 25 2 0 52 chain 7498 chr17 81195210 + 49139661 49139935 L1MC1 2226 - 48 293 174171 18 47 38 16 11 9 14 57 44 45 23 18 43 chain 3107 chr17 81195210 + 49175486 49175520 MER21B 843 + 765 799 222797 34 chain 22239 chr17 81195210 + 49200743 49201039 AluSp 311 + 9 298 119170 63 20 13 213 chain 6953 chr17 81195210 + 49215735 49215817 MER30 238 - 0 82 177787 82 chain 9965 chr17 81195210 + 49227244 49227364 MER41B 635 - 515 635 160754 120 chain 29207 chr17 81195210 + 49227920 49228229 AluYg6 310 + 0 309 88019 309 chain 24644 chr17 81195210 + 49249217 49249497 AluSp 311 - 31 311 106758 280 chain 15105 chr17 81195210 + 49364207 49364391 L1PA4 6152 - 18 203 141012 138 7 8 39 chain 12716 chr17 81195210 + 49370780 49370978 MER30 238 + 0 238 149399 21 1 19 8 0 1 44 9 7 14 1 24 100 chain 142241 chr17 81195210 + 49371562 49373155 L1PA4 6152 - 1 1595 25768 450 3 0 399 0 4 741 chain 5483 chr17 81195210 + 49379281 49379390 MER4E 760 - 11 122 190189 26 5 6 34 18 19 26 chain 32645 chr17 81195210 + 49379433 49379885 MER4A1 472 + 2 472 79770 245 7 28 17 1 0 74 16 14 92 chain 515848 chr17 81195210 + 49382309 49388434 L1PA6 6164 + 0 6160 5590 250 1 0 160 0 1 5 1 0 1542 1 0 374 1 2 574 0 1 189 3 0 228 57 4 301 8 73 658 0 4 45 0 2 285 0 1 346 1 0 161 1 0 36 4 5 71 0 4 141 0 11 528 2 10 137 3 0 11 chain 30035 chr17 81195210 + 49389011 49389399 MLT2A1 477 - 92 477 84696 7 2 0 179 0 1 18 1 2 7 3 0 171 chain 195052 chr17 81195210 + 49391680 49395270 MER4-int 2692 + 1 2692 19581 10 1 0 25 2 0 63 1 0 19 602 5 104 328 8 16 0 3 5 8 5 343 1 5 25 0 5 46 12 17 300 0 6 47 0 1 68 0 5 102 4 0 83 3 4 95 0 1 47 9 11 16 0 6 10 6 1 254 2 0 102 0 1 80 0 1 55 1 0 274 3 0 5 2 0 7 10 2 100 0 1 31 1 7 156 0 1 100 0 1 6 chain 32768 chr17 81195210 + 49395278 49396035 MER4A1 472 + 0 458 79580 247 7 28 10 5 3 133 318 0 37 chain 47092 chr17 81195210 + 49397048 49397689 MER4D1 891 - 251 891 61131 120 1 0 83 10 9 13 0 1 230 0 1 61 7 8 44 1 0 12 12 11 47 chain 339051 chr17 81195210 + 49404373 49408281 L1P2 5180 + 584 4469 11920 203 0 15 182 49 0 462 1 0 11 0 4 1061 1 0 1873 0 9 65 chain 28961 chr17 81195210 + 49408282 49408607 SVA_B 1603 + 1278 1603 89173 325 chain 153579 chr17 81195210 + 49408613 49410451 L1P1 4361 - 2526 4360 24146 597 1 2 55 0 3 471 12 5 125 4 3 573 chain 89115 chr17 81195210 + 49445047 49446071 L1PA7 6471 - 1 1025 39957 11 3 0 841 1 4 168 chain 19737 chr17 81195210 + 49497850 49498185 THE1B 368 + 0 349 127992 103 1 7 48 38 42 10 2 6 16 1 0 7 2 1 30 0 1 56 2 3 19 chain 47412 chr17 81195210 + 49507410 49507970 LTR19B 566 + 0 564 60892 264 1 0 37 0 1 4 0 1 30 0 2 114 0 1 110 chain 517278 chr17 81195210 + 49524038 49530520 L1PA7 6471 + 3 6470 5456 408 2 3 264 39 39 34 16 1 395 0 4 892 5 1 431 8 7 83 0 2 64 45 11 58 1 2 131 0 2 54 0 4 45 0 18 140 0 4 121 0 5 263 8 9 30 1 3 13 0 4 37 0 2 344 8 9 57 25 8 325 1 0 109 1 0 199 0 1 10 0 1 12 1 9 5 2 0 438 0 2 165 1 0 24 0 5 308 1 5 583 15 3 242 0 1 18 chain 224761 chr17 81195210 + 49559875 49562302 L1PA2 6032 - 8 2435 17612 2427 chain 6689 chr17 81195210 + 49568141 49568292 MLT1A0 366 + 8 159 179770 20 1 0 11 56 57 63 chain 22178 chr17 81195210 + 49572118 49572380 L1PA7 6471 - 3 262 119449 7 3 0 252 chain 9713 chr17 81195210 + 49572384 49572574 LTR26 622 - 432 613 162015 22 32 22 12 1 0 75 16 18 32 chain 2448 chr17 81195210 + 49589847 49589975 MER51A 677 + 196 282 233725 13 72 0 21 10 40 12 chain 54931 chr17 81195210 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49673722 49673976 L1PA7 6471 - 4 252 132209 6 5 0 8 0 1 128 1 0 9 8 7 89 chain 292317 chr17 81195210 + 49701179 49704399 L1PA3long 6157 + 2924 6157 13875 715 0 5 1151 0 5 504 1 0 6 7 11 836 chain 2964 chr17 81195210 + 49704639 49704791 MER5A 189 - 21 189 225785 35 102 118 15 chain 22164 chr17 81195210 + 49736367 49736872 MLT2B2 565 + 0 562 119528 141 113 124 27 7 0 21 54 107 55 0 2 48 10 8 29 chain 13207 chr17 81195210 + 49742907 49743100 Tigger3a 397 - 24 236 147433 67 15 38 77 4 0 30 chain 4568 chr17 81195210 + 49746698 49746749 LTR12E 1234 + 653 704 200026 51 chain 7452 chr17 81195210 + 49747123 49747213 LTR12D 1347 + 1257 1347 174434 90 chain 27964 chr17 81195210 + 49792403 49792727 L1PA4 6152 + 5817 6151 93126 16 0 1 272 0 9 36 chain 13171 chr17 81195210 + 49794379 49794688 MER21C 908 + 2 234 147579 22 23 22 46 16 15 12 74 0 18 5 4 93 chain 14076 chr17 81195210 + 49795236 49795565 L1PB1 5432 + 5117 5420 144300 7 1 0 14 1 0 9 17 15 5 2 0 45 4 7 13 6 5 44 1 0 15 1 0 4 47 32 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 9894 chr17 81195210 + 49797897 49798028 L1MA7 2200 + 1775 1905 161098 54 1 0 76 chain 4430 chr17 81195210 + 49799254 49799325 MER21C 908 + 558 636 201587 18 10 17 43 chain 39971 chr17 81195210 + 49863004 49863542 L1MA2 4263 - 1177 1702 69363 176 1 2 133 8 0 75 5 1 54 3 1 83 chain 41942 chr17 81195210 + 49888655 49889139 L1PA6 6164 - 3 491 66696 150 1 5 333 chain 14837 chr17 81195210 + 49893638 49893856 L1MA2 4263 - 213 423 141817 6 6 0 47 0 1 31 15 13 95 1 0 17 chain 4293 chr17 81195210 + 49902849 49902894 MIR 256 - 142 187 203319 45 chain 23397 chr17 81195210 + 49931001 49931340 THE1D 372 + 0 360 113665 62 3 13 47 6 10 56 7 9 27 4 10 102 2 1 23 chain 3074 chr17 81195210 + 49950089 49950126 MER63A 208 + 85 122 223484 37 chain 3218 chr17 81195210 + 50018424 50018524 MIRb 242 - 109 208 220607 14 0 1 21 48 46 17 chain 16556 chr17 81195210 + 50033107 50033347 L1PA8 5853 + 5611 5847 136776 71 8 6 52 2 1 19 12 11 76 chain 23311 chr17 81195210 + 50057847 50058188 L1PA14 3548 - 106 434 114153 28 1 0 18 1 0 18 4 2 33 5 1 10 1 0 111 1 0 84 1 0 6 2 0 17 chain 238255 chr17 81195210 + 50061578 50064878 L1PB1 5432 + 2168 5424 16866 39 1 9 236 0 1 41 6 0 252 2 1 4 0 1 87 14 16 12 10 1 7 0 2 431 0 5 54 1 2 4 1 0 109 0 1 116 0 4 11 0 1 104 0 2 140 0 4 161 1 0 17 5 1 161 7 9 236 7 0 70 0 4 104 3 0 77 0 2 192 0 2 202 11 6 5 1 0 13 18 1 6 1 0 13 1 0 11 5 1 8 2 0 53 2 1 15 1 0 41 5 4 15 1 0 6 16 6 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 88313 chr17 81195210 + 50131051 50132134 MER11B 1079 + 0 1079 40256 225 0 5 13 19 16 513 8 2 228 0 1 61 5 4 11 chain 14835 chr17 81195210 + 50143524 50143729 THE1D-int 1627 + 12 224 141826 28 1 2 83 0 9 64 6 3 23 chain 24473 chr17 81195210 + 50171330 50171658 L1PA7 6471 + 6136 6467 107688 161 10 13 6 1 0 62 1 4 77 2 0 8 chain 31724 chr17 81195210 + 50209147 50209543 L1PA3long 6157 + 5774 6157 81288 322 25 12 49 chain 108077 chr17 81195210 + 50262897 50264071 L1PA2 6032 + 4858 6032 34694 1174 chain 37551 chr17 81195210 + 50332396 50332854 LTR2 463 + 0 463 72753 61 0 3 63 0 3 64 0 1 117 1 0 10 1 0 141 chain 24018 chr17 81195210 + 50355713 50356017 AluSc5 308 - 0 308 110227 42 1 5 261 chain 27234 chr17 81195210 + 50362282 50362590 L1PA7 6471 + 6147 6459 95482 168 1 0 123 0 5 16 chain 62701 chr17 81195210 + 50367549 50368293 L1PA7 6471 + 5722 6465 51589 41 0 1 695 2 0 6 chain 42852 chr17 81195210 + 50383386 50383932 MLT2A2 560 + 0 560 65592 194 1 4 183 0 2 23 0 11 88 3 1 54 chain 57738 chr17 81195210 + 50404261 50405102 L1PB 1623 + 98 933 54111 4 1 0 10 1 0 5 1 0 70 14 12 70 4 3 126 2 1 19 28 26 41 2 1 40 2 0 64 0 3 265 0 2 8 9 10 55 chain 146069 chr17 81195210 + 50409997 50411666 L1PA5 6144 - 0 1679 25154 11 2 1 303 0 7 526 1 5 826 chain 32341 chr17 81195210 + 50411666 50412016 L1PA5 6144 + 4117 4467 80147 350 chain 32842 chr17 81195210 + 50419433 50419795 L1PA3long 6157 - 0 366 79473 141 0 4 221 chain 82429 chr17 81195210 + 50420699 50422040 L1PA7 6471 - 3 997 42573 152 0 1 166 10 0 341 340 0 184 0 2 148 chain 482684 chr17 81195210 + 50428636 50434251 L1PA6 6164 - 2 5668 7637 238 0 5 64 0 1 1786 1 43 116 0 1 384 1 0 334 5 6 37 0 1 78 0 1 740 1 3 753 0 2 103 0 1 528 4 0 408 1 0 33 chain 11980 chr17 81195210 + 50453615 50453938 MER61C 433 + 28 423 152292 12 3 0 20 60 149 58 86 72 84 chain 545206 chr17 81195210 + 50481207 50487225 L1PA2 6032 - 1 6032 2048 13 2 1 5 1 0 826 0 4 368 0 2 293 0 5 696 1 4 1589 0 1 404 1 0 1104 0 1 459 2 1 182 0 1 72 chain 89795 chr17 81195210 + 50491401 50492395 L1PA3long 6157 + 5153 6153 39724 151 0 4 707 0 2 136 chain 43148 chr17 81195210 + 50494872 50495339 L1PA3long 6157 + 5537 6004 65231 467 chain 13883 chr17 81195210 + 50495340 50495493 L1PA3long 6157 + 6004 6157 144974 153 chain 52935 chr17 81195210 + 50499392 50500000 L1PA5 6144 + 5460 6069 57059 568 0 1 40 chain 124021 chr17 81195210 + 50500511 50502102 L1PA7 6471 - 1442 3020 29695 49 0 1 301 0 4 188 0 1 100 2 3 106 8 7 266 0 1 20 0 1 350 33 13 73 1 2 7 0 1 5 5 1 31 0 1 46 chain 113775 chr17 81195210 + 50502102 50503535 L1PA7 6471 + 5038 6470 33111 382 0 1 60 0 1 66 5 4 41 9 1 27 3 4 93 0 3 68 0 1 220 0 2 295 2 1 5 0 1 152 1 0 4 chain 229719 chr17 81195210 + 50535460 50538102 L1PA6 6164 + 3504 6162 17319 19 1 0 393 0 1 324 2 1 120 0 4 928 1 5 16 1 0 108 0 3 130 0 6 5 1 2 593 chain 26742 chr17 81195210 + 50541911 50542267 THE1A 353 + 0 353 97187 110 1 0 9 17 16 124 1 0 94 chain 118740 chr17 81195210 + 50542282 50543847 THE1A-int 1579 + 17 1579 31519 96 0 3 81 4 7 290 10 3 404 4 0 158 1 0 4 8 9 202 10 11 188 1 2 104 chain 26305 chr17 81195210 + 50543849 50544192 THE1A 353 + 2 342 98812 79 4 2 5 0 1 21 1 0 149 1 0 83 chain 27033 chr17 81195210 + 50565784 50566076 L1PA3long 6157 - 0 292 96171 292 chain 23169 chr17 81195210 + 50603799 50604147 THE1C 375 + 0 356 114821 6 0 1 70 5 6 59 6 10 34 1 0 5 5 5 106 0 4 44 1 0 6 chain 12752 chr17 81195210 + 50608131 50608274 L1PA4 6152 + 6008 6151 149244 143 chain 4875 chr17 81195210 + 50614320 50614432 MER45B 1037 + 827 942 196544 38 0 5 13 20 18 12 7 7 22 chain 127327 chr17 81195210 + 50626342 50627770 L1PA5 6144 - 0 1430 28734 11 1 3 1040 0 1 303 1 0 72 chain 4375 chr17 81195210 + 50650971 50651020 LTR12F 595 - 12 61 202264 49 chain 447467 chr17 81195210 + 50651086 50656767 HERV9-int 5642 + 13 5642 8828 387 22 19 5 0 3 174 0 2 94 20 0 19 3 0 132 2 0 11 4 0 266 11 9 11 6 0 114 5 0 7 0 5 911 0 2 168 19 1 10 0 1 426 0 1 39 0 1 738 2 20 84 0 3 179 1 6 149 3 5 512 0 2 175 9 8 158 6 7 264 8 8 81 1 0 72 0 1 152 10 8 13 0 1 22 4 2 24 1 0 60 1 0 13 28 5 19 10 4 16 chain 97006 chr17 81195210 + 50692158 50693209 L1PA3long 6157 - 1570 2621 37516 1051 chain 140874 chr17 81195210 + 50693209 50694778 L1PA3long 6157 + 4581 6147 26014 725 0 1 61 4 0 779 chain 37009 chr17 81195210 + 50694923 50695405 LTR12F 595 + 0 582 73505 91 25 124 149 0 1 217 chain 4321 chr17 81195210 + 50711129 50711190 MADE1 96 - 0 92 202954 19 1 32 41 chain 3990 chr17 81195210 + 50713936 50713986 MER82 654 - 45 96 207528 27 0 1 23 chain 95832 chr17 81195210 + 50732528 50733582 L1PA3long 6157 - 2 1055 37709 466 1 0 587 chain 211951 chr17 81195210 + 50733582 50735908 L1PA3long 6157 + 2773 5104 18365 1173 0 1 410 0 4 743 chain 4820 chr17 81195210 + 50776964 50777124 MER74B 573 + 69 231 197126 26 46 47 21 33 34 34 chain 16449 chr17 81195210 + 50812255 50812495 L1PA8 5853 + 5608 5844 137068 71 2 1 14 8 7 39 2 1 19 2 1 83 chain 20860 chr17 81195210 + 50814459 50814800 L1PA16 3655 - 82 519 124431 80 0 1 73 40 43 70 10 102 68 chain 16747 chr17 81195210 + 50820277 50820496 L1PA8 5853 - 0 215 136267 93 1 0 19 2 1 52 1 0 9 1 0 41 chain 27957 chr17 81195210 + 50827364 50827748 MLT2A1 477 + 0 383 93140 87 1 2 57 4 5 18 4 1 213 chain 3964 chr17 81195210 + 50831089 50831135 MLT1C 463 - 385 431 207924 46 chain 5432 chr17 81195210 + 50848396 50848561 L1PA14 3548 + 3265 3424 190686 40 0 1 16 75 70 4 1 0 21 1 0 7 chain 70406 chr17 81195210 + 50851513 50852325 L1PA6 6164 - 3 818 48211 9 1 0 576 0 4 226 chain 4408 chr17 81195210 + 50869504 50869567 MER6A 605 + 336 392 201832 43 7 0 13 chain 260581 chr17 81195210 + 50891032 50895037 L1P2 5180 - 1593 5175 15663 23 1 0 144 1 0 127 0 1 56 0 4 63 0 2 223 335 10 383 0 2 150 0 4 64 7 7 142 16 18 67 6 10 50 0 2 92 0 1 253 3 2 224 0 4 91 32 33 87 1 0 57 0 3 89 4 13 37 1 0 4 0 1 27 1 0 219 0 15 39 29 8 170 53 0 4 23 0 40 8 7 69 19 0 85 75 48 62 12 11 37 6 5 48 1 0 56 8 9 15 1 0 65 chain 180080 chr17 81195210 + 50902152 50904979 MER61-int 3695 - 1172 3685 20983 63 0 1 73 10 0 227 0 4 34 1 0 136 310 0 49 7 6 74 2 1 68 15 14 145 2 7 71 10 9 109 1 0 37 1 3 32 1 3 123 1 2 221 1 2 69 2 0 152 6 5 129 6 5 5 2 0 101 7 6 71 10 0 54 1 2 13 0 1 30 1 0 39 1 13 41 1 0 227 1 0 22 0 2 12 chain 14952 chr17 81195210 + 50913472 50913694 L1MA3 4352 + 4113 4327 141468 55 0 1 66 4 0 24 2 0 23 1 0 6 1 0 28 1 0 11 chain 41046 chr17 81195210 + 50939177 50939791 LTR12_ 688 + 0 688 67836 25 1 0 147 24 0 76 49 48 87 0 103 55 4 0 102 4 5 40 chain 103670 chr17 81195210 + 50960509 50961882 LTR12C 1709 - 0 1708 35809 82 1 0 68 1 0 144 4 3 10 13 12 161 12 5 83 0 9 7 1 39 51 0 2 103 1 281 160 0 1 17 11 10 154 12 29 277 chain 10528 chr17 81195210 + 50968501 50968646 L1PA8 5853 + 5710 5853 158139 30 2 1 19 1 0 93 chain 27678 chr17 81195210 + 50979932 50980344 MLT2A1 477 + 2 401 94121 168 12 10 7 0 1 16 0 1 76 12 0 25 0 2 5 10 8 72 1 0 8 chain 5216 chr17 81195210 + 50984894 50985129 MLT1C 463 - 0 244 192860 34 15 14 36 121 134 5 3 0 21 chain 8615 chr17 81195210 + 50993416 50993525 L1PA5 6144 - 2 104 167655 7 7 0 95 chain 15606 chr17 81195210 + 50995029 50995271 THE1B 368 + 120 368 139562 55 1 0 25 2 0 48 5 6 48 18 26 40 chain 19314 chr17 81195210 + 51006411 51006702 MER4A1 472 + 0 337 129203 33 0 1 12 3 4 23 1 0 132 35 80 52 chain 43476 chr17 81195210 + 51020905 51021438 MER41A 554 - 0 537 64839 157 0 1 61 0 1 100 0 1 158 0 1 57 chain 4476 chr17 81195210 + 51035631 51035679 L1PA3long 6157 - 0 48 201058 48 chain 88429 chr17 81195210 + 51036283 51037292 L1P1 4361 - 987 1996 40211 223 1 0 296 1 0 4 2 3 85 5 6 392 chain 35363 chr17 81195210 + 51039015 51039429 LTR14C 587 + 170 585 75714 174 0 1 240 chain 19122 chr17 81195210 + 51039838 51040059 L1PA7 6471 - 1 222 129767 221 chain 45404 chr17 81195210 + 51049730 51050273 MER41A 554 - 0 541 62590 103 2 0 438 chain 81851 chr17 81195210 + 51050295 51051426 MER41-int 2638 - 2 1393 42820 164 25 27 13 0 250 271 2 0 35 2 0 24 0 1 156 1 0 204 0 4 7 4 5 119 1 6 21 4 5 9 0 1 69 chain 80762 chr17 81195210 + 51070282 51071702 L1PB1 5432 - 28 1319 43285 13 1 0 21 1 0 24 2 0 15 7 4 19 15 6 6 2 0 15 1 0 45 47 48 20 2 0 9 5 1 12 1 0 32 3 0 5 164 21 72 0 2 17 0 19 175 0 6 137 7 9 21 0 1 62 0 9 105 1 3 45 5 0 237 0 4 12 1 3 36 chain 25591 chr17 81195210 + 51085688 51086060 THE1C 375 - 0 368 101778 26 1 0 141 24 23 145 1 0 16 2 1 16 chain 29196 chr17 81195210 + 51139487 51139853 THE1C-int 1605 + 0 420 88071 16 1 2 92 0 54 161 1 0 95 chain 6685 chr17 81195210 + 51177041 51177191 L1MA8 2339 + 1887 2043 179787 15 0 1 19 8 4 37 37 46 34 chain 104155 chr17 81195210 + 51192447 51194060 L1PB1 5432 - 9 1631 35705 19 1 0 13 2 1 20 1 0 24 2 0 14 1 0 5 44 31 12 14 13 34 1 0 15 3 2 9 2 3 17 4 12 11 2 0 9 5 1 14 8 6 24 13 19 124 8 0 165 2 1 100 0 2 82 3 0 260 0 1 54 0 1 348 46 73 27 7 12 44 chain 5774 chr17 81195210 + 51199642 51199715 MLT2B4 540 - 460 533 187406 73 chain 38208 chr17 81195210 + 51228171 51228633 LTR2 463 + 0 463 71828 367 0 1 95 chain 16710 chr17 81195210 + 51235779 51235991 L1PA7 6471 + 6256 6469 136376 54 1 2 157 chain 385482 chr17 81195210 + 51256783 51262420 L1PB1 5432 - 16 5340 10592 12 1 0 13 1 0 21 1 0 24 2 0 14 8 5 30 14 1 11 9 8 41 2 1 14 2 1 53 2 0 9 16 11 13 1 0 11 0 7 6 3 10 47 1 2 385 3 7 36 0 2 29 13 0 86 33 36 99 5 6 4 0 1 217 1 0 59 17 16 75 18 18 248 5 0 457 0 2 324 0 8 7 9 1 30 4 7 67 1 0 331 0 1 66 6 5 161 2 3 11 1 0 194 0 1 204 0 4 44 20 11 143 6 7 84 7 17 139 0 1 36 0 7 108 0 4 160 1 2 331 1 0 113 0 4 62 0 3 80 319 0 28 0 2 49 1 2 4 1 0 310 chain 4633 chr17 81195210 + 51268569 51268716 THE1C 375 - 215 368 199268 30 75 83 33 2 0 7 chain 10547 chr17 81195210 + 51278104 51278277 L1MA5A 2387 - 176 344 158057 25 1 0 31 2 0 46 1 0 36 17 16 14 chain 14959 chr17 81195210 + 51281974 51282167 MLT2A2 560 + 0 192 141447 180 1 0 12 chain 49097 chr17 81195210 + 51284229 51286123 L1PB1 5432 + 3582 5416 59671 7 4 0 141 13 0 7 1 0 71 0 3 282 1025 1012 9 1 0 20 1 0 13 1 0 11 4 0 11 5 4 47 2 1 14 2 1 38 8 7 15 3 0 6 74 59 9 1 0 20 2 1 13 0 2 5 3 0 5 chain 105066 chr17 81195210 + 51286187 51287462 L1PA7 6471 - 13 1287 35488 147 5 15 306 13 5 199 2 1 163 2 0 438 chain 15713 chr17 81195210 + 51294293 51294556 L1PA8 5853 - 0 258 139232 92 2 1 19 2 1 46 3 1 14 2 1 16 5 6 18 0 1 27 6 4 11 chain 14879 chr17 81195210 + 51297940 51298284 THE1C 375 - 37 361 141688 89 40 36 19 7 8 69 53 54 12 22 4 33 chain 14911 chr17 81195210 + 51301039 51301279 L1PA16 3655 - 239 477 141600 91 6 7 12 22 20 85 1 0 23 chain 132821 chr17 81195210 + 51319111 51320558 L1PA3long 6157 + 4706 6157 27457 604 0 4 843 chain 12086 chr17 81195210 + 51360790 51361004 L1PA16 3655 - 67 286 151854 10 3 0 111 46 54 44 chain 28076 chr17 81195210 + 51364798 51365092 AluYa5 310 - 16 310 92735 294 chain 5923 chr17 81195210 + 51367878 51367945 L1PA3long 6157 + 6090 6157 185968 67 chain 91903 chr17 81195210 + 51386366 51387491 L1PA6 6164 + 5035 6161 38995 298 1 2 63 0 1 81 1 2 120 0 1 248 1 0 305 2 0 5 chain 46392 chr17 81195210 + 51388041 51388638 L1PA8 5853 + 5267 5853 61693 148 4 0 149 2 1 43 2 0 71 1 0 11 1 0 50 2 1 19 2 1 92 chain 135158 chr17 81195210 + 51417254 51418946 L1P2 5180 + 2 1692 26982 147 1 0 51 1 0 47 3 2 83 5 11 6 6 0 166 1 0 192 0 3 59 1 2 16 1 0 6 1 0 899 chain 191256 chr17 81195210 + 51422890 51425030 L1PA5 6144 + 3994 6139 19936 23 0 1 103 2 0 219 0 4 949 0 1 597 0 1 247 chain 24650 chr17 81195210 + 51432913 51433242 L1PA3long 6157 - 1511 1804 105488 101 41 6 149 1 0 37 chain 138824 chr17 81195210 + 51433242 51434767 L1PA3long 6157 + 4632 6157 26346 1525 chain 51455 chr17 81195210 + 51443348 51444088 MER4E 760 + 0 753 58002 17 1 2 145 4 0 100 0 1 4 1 0 12 2 1 65 22 20 165 3 2 69 13 34 88 1 0 28 chain 129190 chr17 81195210 + 51488041 51489518 L1PA6 6164 - 1060 2535 28269 461 1 0 402 1 0 612 chain 88716 chr17 81195210 + 51489518 51490550 L1PA6 6164 + 5124 6159 40082 879 2 10 9 5 0 137 chain 40463 chr17 81195210 + 51494247 51494759 MER9a3 513 - 0 513 68648 68 2 0 10 0 1 322 0 1 52 1 0 44 1 3 12 chain 27821 chr17 81195210 + 51518169 51518577 MLT2A1 477 - 73 477 93631 8 2 0 11 9 0 212 30 35 38 0 2 98 chain 15185 chr17 81195210 + 51530635 51530986 L1PB1 5432 - 5 329 140813 5 2 0 18 1 0 13 12 11 10 1 0 24 2 0 15 1 0 4 2 0 12 33 19 16 0 7 37 1 0 15 2 1 53 2 0 5 8 4 14 1 0 10 8 7 24 chain 1221 chr17 81195210 + 51532863 51532970 L1MA2 4263 - 216 323 135536 82 2 1 6 1 0 11 0 2 5 chain 40070 chr17 81195210 + 51533033 51533484 LTR7 482 - 0 482 69224 188 0 31 263 chain 1815 chr17 81195210 + 51534195 51534354 L1MA2 4263 - 706 864 135536 46 2 0 18 0 1 93 chain 93971 chr17 81195210 + 51577478 51578502 L1PA3long 6157 - 0 1039 38359 480 0 15 544 chain 5309 chr17 81195210 + 51596119 51596177 L1PA16 3655 - 1036 1094 191925 58 chain 125331 chr17 81195210 + 51608444 51609813 L1PA3long 6157 - 5 1373 29291 852 1 0 516 chain 5491 chr17 81195210 + 51614881 51614960 MADE1 96 + 0 96 190127 30 2 19 47 chain 3275 chr17 81195210 + 51619803 51619857 L1MA6 2487 - 85 135 219441 4 1 0 19 4 1 26 chain 3504 chr17 81195210 + 51643251 51643440 L1MA4A 3247 + 3022 3207 215301 15 1 2 20 103 101 12 10 7 28 chain 54587 chr17 81195210 + 51679154 51680286 L1PB1 5432 - 12 882 55976 16 1 0 13 1 0 21 1 0 24 2 0 15 51 35 16 5 4 40 2 1 16 1 0 52 308 73 265 17 18 109 1 0 81 8 5 66 chain 11862 chr17 81195210 + 51681959 51682095 L1PA7 6471 + 6334 6470 152778 136 chain 37777 chr17 81195210 + 51685446 51685992 LTR7B 505 + 0 495 72449 51 6 5 138 70 0 33 0 22 6 3 2 72 1 0 166 chain 3745 chr17 81195210 + 51686820 51686865 MER4D0 881 + 283 328 211253 45 chain 6164 chr17 81195210 + 51687900 51687968 L1PA5 6144 + 6073 6141 183840 68 chain 26487 chr17 81195210 + 51745791 51746124 THE1C 375 + 0 334 98090 173 5 6 155 chain 29659 chr17 81195210 + 51779365 51779676 AluYb8 318 - 7 318 86033 311 chain 94063 chr17 81195210 + 51794487 51796028 L1PA15 4387 - 436 1930 38330 18 1 0 41 3 1 32 1 0 39 23 22 62 6 10 28 16 17 148 55 15 120 9 10 10 10 11 26 5 10 36 1 0 4 0 1 122 1 0 74 1 0 142 16 5 14 1 0 59 0 3 86 20 16 10 1 0 132 26 27 120 1 2 21 chain 29054 chr17 81195210 + 51807328 51807635 AluYa5 310 - 3 310 88745 307 chain 73702 chr17 81195210 + 51825425 51826298 MER11D 897 + 0 897 46673 592 2 25 85 0 1 194 chain 127482 chr17 81195210 + 51827632 51829353 L1PA8 5853 - 0 1687 28696 92 8 7 10 9 8 32 20 11 14 7 6 63 5 3 45 2 1 223 0 2 252 12 14 59 0 2 125 17 2 199 9 10 108 16 5 394 chain 126160 chr17 81195210 + 51835899 51837301 L1PA3long 6157 - 2372 3777 28996 532 0 2 344 1 2 525 chain 211638 chr17 81195210 + 51837301 51839654 L1PA3long 6157 + 3803 6157 18386 1503 0 1 850 chain 137962 chr17 81195210 + 51851627 51853251 L1PA5 6144 + 4539 6131 26487 301 33 0 213 4 0 79 0 2 160 1 0 10 0 1 43 0 2 461 0 1 319 chain 130896 chr17 81195210 + 51859713 51861218 L1PA5 6144 + 4639 6141 27884 1173 0 1 119 0 1 202 5 0 6 chain 74508 chr17 81195210 + 51861223 51862276 L1PA8 5853 + 4775 5853 46268 26 0 2 207 2 0 84 2 0 135 0 1 224 14 22 45 13 16 27 21 20 21 6 4 81 1 0 11 0 1 5 1 0 33 5 23 83 0 1 6 chain 163289 chr17 81195210 + 51886584 51888416 L1PA3long 6157 - 4 1846 22909 150 0 1 163 0 1 449 8 7 82 1 0 776 1 0 121 0 11 81 chain 142438 chr17 81195210 + 51888416 51889979 L1PA3long 6157 + 2745 4308 25720 1563 chain 44472 chr17 81195210 + 51912441 51913203 L1PA13 3608 - 60 795 63612 12 4 1 10 13 6 15 24 16 18 45 40 33 3 1 7 1 0 25 1 2 6 4 0 22 1 0 59 10 8 108 1 0 27 1 0 123 0 4 57 0 3 132 chain 54331 chr17 81195210 + 51919025 51919635 L1PA3long 6157 - 5 617 56144 273 0 2 337 chain 26393 chr17 81195210 + 51919639 51919945 L1P1 4361 + 4024 4328 98438 127 1 0 154 1 0 23 chain 419279 chr17 81195210 + 51930386 51935741 L1PA8A 6298 + 451 5830 9553 6 0 1 635 0 4 30 24 0 15 1 0 49 0 1 30 4 2 974 1 0 190 0 4 41 21 23 45 0 1 74 0 4 31 0 1 340 4 1 12 0 4 397 1 0 142 0 1 252 10 17 89 10 7 139 1 0 123 0 1 373 16 2 25 2 0 285 1 0 4 24 27 437 2 1 82 1 4 111 0 3 80 0 1 28 0 37 193 chain 55532 chr17 81195210 + 51954519 51955142 L1PA5 6144 - 578 1202 55400 569 1 2 53 chain 51009 chr17 81195210 + 51955142 51955734 L1PA5 6144 + 5553 6141 58300 443 0 1 138 5 0 6 chain 32093 chr17 81195210 + 51958364 51958853 MLT2A1 477 - 0 477 80707 50 5 0 6 5 0 8 5 0 8 25 20 21 0 4 37 1 0 150 1 5 26 1 2 140 chain 227844 chr17 81195210 + 51979914 51982771 L1PA7 6471 + 3564 6459 17433 41 0 1 4 3 5 616 7 1 346 2 1 92 0 4 251 1 35 313 7 0 295 5 0 52 2 0 692 2 0 6 4 6 99 0 18 17 chain 370884 chr17 81195210 + 51992087 51996265 L1PA4 6152 + 1989 6151 11060 384 5 0 798 1 0 141 9 3 367 1 0 430 5 0 1187 0 2 625 0 7 78 7 0 140 chain 15626 chr17 81195210 + 52008144 52008334 L1PA6 6164 + 5966 6162 139504 108 1 7 81 chain 77970 chr17 81195210 + 52032824 52033794 MER11A 1151 - 0 1021 44532 42 0 9 9 7 6 165 0 35 23 3 0 177 0 1 379 0 11 63 2 1 100 chain 3474 chr17 81195210 + 52035872 52035992 L1MA4A 3247 + 2146 2244 215766 25 22 15 7 7 0 15 24 16 20 chain 19899 chr17 81195210 + 52040241 52040548 L1PA8 5853 - 0 300 127486 93 1 0 19 8 7 29 19 18 8 1 0 70 3 1 44 1 0 11 chain 481226 chr17 81195210 + 52144839 52150890 L1PA6 6164 - 5 6134 7685 453 0 2 48 1 4 279 2 1 693 0 1 306 1 7 44 11 12 165 0 45 686 0 1 159 9 13 50 0 1 250 0 1 117 0 1 493 1 2 105 5 7 274 0 13 363 5 4 430 10 11 297 0 17 237 1 0 100 1 0 4 0 1 13 19 0 227 0 1 4 1 0 187 chain 28932 chr17 81195210 + 52159416 52159774 THE1C-int 1605 - 1173 1585 89318 260 0 54 98 chain 495461 chr17 81195210 + 52163010 52169113 L1PA6 6164 + 0 6162 7104 405 0 1 43 8 0 120 1 0 230 1 18 376 13 26 500 0 1 140 0 1 107 13 17 228 0 2 117 0 2 555 0 1 284 4 0 153 0 9 193 0 1 177 2 0 945 0 5 746 0 1 75 1 2 116 0 15 550 chain 384350 chr17 81195210 + 52203145 52208892 L1PA6 6164 - 2 4679 10636 116 0 1 219 18 6 300 1107 0 478 6 5 15 0 2 365 0 5 158 5 6 358 0 13 487 0 4 100 12 31 205 0 5 66 1 0 27 0 1 388 10 7 56 15 16 395 0 2 840 chain 79287 chr17 81195210 + 52203799 52204900 MER11A 1151 + 0 1151 43918 79 0 8 89 8 0 118 0 11 83 0 1 51 7 8 111 1 0 111 21 24 9 1 2 157 12 9 13 1 36 74 0 3 88 9 8 58 chain 59430 chr17 81195210 + 52231528 52232247 L1PA7 6471 + 5749 6466 53153 8 0 1 524 1 0 177 2 0 7 chain 435732 chr17 81195210 + 52238484 52243388 L1PA4 6152 + 1229 6141 9175 127 6 5 1631 1 0 174 6 0 2134 0 6 97 0 7 496 0 3 232 chain 46808 chr17 81195210 + 52254054 52254577 L1PA4 6152 + 5620 6152 61363 415 0 4 102 0 5 6 chain 2808 chr17 81195210 + 52255047 52255130 MER89 557 + 0 122 228635 29 21 28 10 9 41 14 chain 15065 chr17 81195210 + 52267932 52268207 L1PB1 5432 - 21 273 141123 7 1 0 13 1 0 21 1 0 24 2 0 14 13 10 9 8 0 17 3 0 16 1 0 12 1 2 29 1 0 16 2 1 53 2 0 8 chain 14201 chr17 81195210 + 52276921 52277182 L1MA3 4352 - 1 246 143875 21 5 1 12 1 0 25 14 12 22 6 4 19 4 0 122 3 0 7 chain 76037 chr17 81195210 + 52278934 52279902 LTR5_Hs 974 + 0 974 45457 289 0 1 177 0 1 188 1 0 163 8 15 16 23 21 103 chain 24521 chr17 81195210 + 52279924 52280202 L1PA4 6152 - 10 288 107433 278 chain 79189 chr17 81195210 + 52283250 52284519 L1PA14 3548 + 2147 3479 43952 119 1 0 23 28 0 95 0 2 4 0 3 54 0 4 73 2 1 10 4 3 57 0 81 5 0 1 7 1 0 117 3 8 102 1 0 14 14 12 11 2 0 47 2 0 5 2 0 47 8 6 31 0 30 12 2 0 5 6 5 80 1 0 114 14 9 35 4 2 12 1 0 5 1 0 17 10 9 5 0 1 28 6 0 7 1 0 14 chain 23443 chr17 81195210 + 52304283 52304577 THE1B 368 + 72 364 113413 97 4 3 121 1 0 71 chain 27234 chr17 81195210 + 52306131 52306486 THE1B 368 + 0 368 95483 44 5 20 101 8 7 121 1 0 75 chain 83452 chr17 81195210 + 52341989 52343088 MER11A 1151 - 0 1151 42138 58 9 8 14 0 1 72 1 0 95 9 41 177 0 1 272 0 1 22 0 1 61 0 2 20 0 11 14 0 1 48 2 1 31 1 0 6 10 8 98 0 8 79 chain 37186 chr17 81195210 + 52345910 52346455 MLT2A2 560 - 0 560 73252 147 4 15 31 0 2 14 0 1 108 0 1 15 29 30 16 12 11 169 chain 4615 chr17 81195210 + 52358969 52359056 MER58A 224 - 82 181 199466 33 12 23 21 1 2 20 chain 12877 chr17 81195210 + 52363371 52363535 PABL_A 660 - 0 165 148408 73 0 2 12 1 0 78 chain 30499 chr17 81195210 + 52363535 52363998 LTR12F 595 + 17 588 83432 7 0 1 8 0 1 68 1 2 42 5 69 60 24 0 13 8 72 30 1 2 196 chain 452992 chr17 81195210 + 52364036 52370101 HERV9-int 5642 + 11 5642 8653 588 4 5 112 6 0 91 49 0 38 2 1 257 3 0 5 88 3 476 1 2 32 1 2 626 0 1 64 9 9 147 289 0 537 15 17 238 0 21 712 9 10 95 0 1 50 1 2 48 6 7 74 0 3 425 0 1 519 1 0 224 9 7 36 3 1 27 1 0 60 1 0 13 28 5 19 4 0 3 2 0 17 chain 1540 chr17 81195210 + 52365196 52365260 HERV9-int 5642 + 1037 1101 173978 16 13 13 35 chain 491826 chr17 81195210 + 52393735 52400182 L1PA6 6164 + 1 6160 7279 229 1 0 219 8 0 120 1 0 218 0 17 434 1 0 60 0 1 321 0 1 704 1 0 598 0 1 265 0 1 513 3 0 44 0 1 10 310 0 147 1 7 530 1 2 161 1 0 44 1 0 466 0 1 192 0 1 20 1 0 448 0 7 96 0 1 122 1 2 155 chain 12568 chr17 81195210 + 52403234 52403372 L1PA4 6152 + 5762 5900 149976 138 chain 22161 chr17 81195210 + 52403373 52403624 L1PA4 6152 + 5900 6151 119540 251 chain 6574 chr17 81195210 + 52405094 52405175 HERV9-int 5642 + 0 81 180670 81 chain 52927 chr17 81195210 + 52405180 52405933 HERV9-int 5642 - 4612 5323 57068 181 3 1 132 6 0 16 21 0 93 23 9 93 28 29 157 chain 30534 chr17 81195210 + 52405933 52406299 HERV9-int 5642 + 2811 3207 83033 249 0 30 117 chain 183291 chr17 81195210 + 52406299 52408506 HERV9-int 5642 + 3208 5434 20649 172 0 2 655 0 4 26 0 2 587 0 6 127 2 10 33 0 1 20 2 0 376 2 1 47 1 0 25 0 1 4 1 0 127 chain 28817 chr17 81195210 + 52409761 52410139 LTR12F 595 + 0 480 89817 92 0 37 17 5 69 90 4 5 170 chain 37990 chr17 81195210 + 52422998 52423498 LTR7 482 + 0 480 72146 173 51 0 60 0 31 216 chain 62966 chr17 81195210 + 52452230 52452987 MER4E 760 - 0 760 51463 193 0 1 181 0 4 20 2 0 361 chain 8596 chr17 81195210 + 52458931 52459046 MER85 139 + 0 126 167749 96 4 15 15 chain 4431 chr17 81195210 + 52470851 52470902 MER53 195 + 5 56 201570 51 chain 7888 chr17 81195210 + 52475848 52475940 THE1D-int 1627 + 31 123 171749 92 chain 38076 chr17 81195210 + 52480592 52481129 MLT2A2 560 - 0 560 72022 147 0 11 184 26 35 22 12 15 146 chain 262187 chr17 81195210 + 52496107 52499795 L1PBa 3878 + 93 3777 15572 7 1 0 39 7 6 12 3 0 7 3 2 47 2 1 172 103 104 35 6 5 4 0 1 60 6 5 17 5 4 7 0 1 134 5 1 35 0 5 81 0 2 54 8 9 36 5 4 425 0 5 185 15 9 30 11 12 571 0 1 147 3 4 328 4 7 65 0 1 11 0 5 254 1 0 57 0 3 110 3 0 134 4 5 124 1 0 232 2 1 22 2 0 10 19 13 11 1 0 5 chain 114542 chr17 81195210 + 52500000 52501689 L1PB1 5432 + 3770 5404 32936 192 0 1 28 0 1 18 0 1 258 0 3 148 0 7 24 0 6 157 11 7 305 0 17 52 3 2 9 0 1 96 67 11 24 11 8 11 22 16 47 2 1 16 1 0 44 1 0 15 27 15 16 2 0 4 1 0 15 8 6 18 1 0 21 1 0 13 chain 235808 chr17 81195210 + 52512914 52516560 L1P2 5180 + 3 3346 16991 136 12 11 43 8 7 40 34 33 37 314 117 19 19 0 59 12 2 8 1 0 34 0 1 4 1 0 8 77 1 64 6 4 107 24 3 46 0 15 93 8 12 51 10 14 72 0 1 4 1 0 64 0 1 4 1 0 162 12 13 433 1 0 177 9 6 39 1 0 467 0 1 370 0 4 103 0 1 162 0 1 172 5 5 112 chain 35182 chr17 81195210 + 52516560 52517052 LTR12F 595 + 0 595 75938 72 0 143 23 42 0 137 0 1 192 0 1 26 chain 77628 chr17 81195210 + 52517072 52518126 HERV9-int 5642 + 0 1042 44681 34 3 4 135 2 0 423 11 7 15 10 12 86 6 0 79 6 5 42 6 4 196 chain 84890 chr17 81195210 + 52518158 52519256 L1PA7 6471 + 5369 6467 41558 58 0 1 68 13 11 114 1 0 77 0 2 221 1 3 186 0 2 163 14 11 34 3 4 5 0 1 129 3 0 8 chain 105366 chr17 81195210 + 52525187 52526516 L1PA8 5853 - 1 1339 35406 69 0 1 21 2 1 19 2 1 39 0 2 6 1 0 13 4 3 67 2 0 48 1 0 39 19 4 43 0 8 128 0 1 207 0 16 107 0 2 432 0 1 60 chain 5111 chr17 81195210 + 52527351 52527435 L1PA8 5853 + 5724 5806 193961 16 2 1 19 2 1 45 chain 4882 chr17 81195210 + 52527467 52527526 L1PA8 5853 - 243 301 196454 48 1 0 10 chain 5916 chr17 81195210 + 52527526 52527598 L1PA8 5853 - 315 395 186034 62 0 8 10 chain 7587 chr17 81195210 + 52527631 52527762 MLT1B 390 + 229 362 173624 38 27 29 66 chain 16833 chr17 81195210 + 52533969 52534309 MER57-int 2662 + 42 618 136035 27 51 44 105 7 250 28 8 0 7 9 13 66 7 11 25 chain 6583 chr17 81195210 + 52534363 52534438 L1P1 4361 + 3225 3300 180588 75 chain 317427 chr17 81195210 + 52539472 52543422 L1P2 5180 - 1237 5178 12707 417 17 18 241 0 4 255 1 0 269 0 1 387 54 55 156 0 1 47 10 9 233 0 1 617 0 1 433 0 15 268 1 0 321 34 4 39 2 1 148 chain 18791 chr17 81195210 + 52579204 52579450 L1PA8 5853 - 0 243 130709 93 1 0 19 2 1 60 1 0 70 chain 459897 chr17 81195210 + 52590593 52596682 L1PA8A 6298 - 14 6120 8403 70 0 1 13 0 1 9 11 19 11 0 9 215 3 4 4 1 0 372 4 5 57 0 3 20 11 12 4 0 1 57 6 10 93 4 3 122 4 5 191 0 1 110 0 1 318 5 8 32 12 13 101 2 0 299 8 10 117 10 8 106 0 9 140 23 0 736 12 11 234 1 4 42 2 0 163 0 3 117 8 10 162 1 0 452 1 4 261 1 0 5 0 1 15 1 5 103 5 4 152 2 1 61 1 2 15 0 1 6 4 8 141 0 12 262 5 7 185 1 0 79 15 12 17 2 0 57 2 1 15 6 0 4 2 0 18 1 0 46 2 0 8 5 1 14 1 0 6 10 8 8 1 0 13 1 0 4 2 0 15 2 0 11 chain 37649 chr17 81195210 + 52610596 52611153 L1PA11 4918 - 412 963 72624 18 1 0 13 2 0 67 1 2 12 7 6 22 0 4 24 13 7 30 5 7 74 2 0 12 0 1 234 3 1 17 chain 20411 chr17 81195210 + 52622391 52622655 L1PA10 4194 + 411 678 125862 48 5 10 19 2 0 190 chain 19925 chr17 81195210 + 52633928 52634139 L1PA3long 6157 + 5942 6153 127384 211 chain 25837 chr17 81195210 + 52646751 52647111 THE1B 368 - 0 368 100718 194 3 2 51 2 3 51 5 8 14 0 5 40 chain 29546 chr17 81195210 + 52648623 52648987 THE1B-int 1605 - 1236 1605 86433 5 0 3 344 0 2 15 chain 431610 chr17 81195210 + 52665413 52670587 L1PA6 6164 - 8 5201 9281 147 0 1 106 0 1 206 0 2 377 11 1 846 0 3 96 0 2 6 5 11 392 4 9 760 0 1 679 0 1 175 0 1 11 0 4 386 1 2 746 0 1 220 chain 181341 chr17 81195210 + 52670593 52672894 HERVL-int 5654 - 3351 5654 20868 282 13 1 186 9 14 216 4 7 448 0 1 28 7 5 101 0 1 80 8 11 269 1 0 159 2 3 75 1 0 62 0 2 104 1 3 245 chain 28010 chr17 81195210 + 52673085 52673750 MLT2A1 477 - 13 477 92968 23 0 1 4 1 0 8 255 49 54 0 2 119 0 1 23 0 1 9 6 3 129 17 21 17 chain 12783 chr17 81195210 + 52693213 52693367 L1PA16 3655 - 153 307 149125 154 chain 8598 chr17 81195210 + 52702822 52702947 MER85 139 - 0 137 167741 25 11 23 89 chain 3051 chr17 81195210 + 52705567 52705601 MLT1J2 417 + 250 284 223989 34 chain 13100 chr17 81195210 + 52708375 52708526 L1PA4 6152 - 1 155 147844 55 0 3 96 chain 515157 chr17 81195210 + 52716561 52722710 L1PA6 6164 + 3 6162 5650 10 6 0 6 0 6 435 6 5 1157 1 2 37 10 11 370 2 0 293 0 1 847 6 8 504 0 1 4 1 0 568 1 0 104 1 3 229 0 1 44 1 0 666 1 0 316 0 9 233 1 0 289 chain 31855 chr17 81195210 + 52728438 52728933 L1MA2 4263 - 205 664 81090 99 6 1 87 0 3 5 29 0 54 15 12 57 1 0 78 1 0 63 chain 466692 chr17 81195210 + 52734953 52741208 L1PA8A 6298 - 8 6264 8164 94 5 6 8 1 0 354 0 2 246 1 0 88 1 3 535 1 13 593 0 1 154 0 2 17 12 7 295 0 1 420 0 1 4 1 2 365 0 1 294 0 1 8 0 2 14 1 5 238 7 8 189 2 0 5 0 2 352 3 25 320 5 4 105 0 1 146 0 7 166 4 5 34 8 7 29 0 1 134 0 1 31 5 8 419 2 1 80 6 4 10 2 1 16 2 0 77 40 31 31 2 0 9 12 7 6 1 0 9 1 0 6 1 0 8 1 0 12 8 5 17 2 0 9 2 1 7 1 0 12 13 11 17 19 11 19 3 0 19 23 13 12 1 0 16 1 0 6 chain 61487 chr17 81195210 + 52750750 52751531 LTR17 781 - 0 781 52122 453 1 2 19 10 0 51 13 12 116 0 9 41 0 1 77 chain 115928 chr17 81195210 + 52768614 52769937 L1PA4 6152 + 4807 6143 32482 307 0 1 103 0 4 135 1 8 768 0 1 9 chain 175322 chr17 81195210 + 52773195 52775133 L1PA3long 6157 - 0 1935 21416 1474 4 1 460 chain 83457 chr17 81195210 + 52775133 52776043 L1PA3long 6157 + 3314 4224 42024 910 chain 125779 chr17 81195210 + 52787775 52789286 L1PA7 6471 + 4957 6468 29162 290 0 1 9 0 1 120 4 1 64 0 7 171 1 0 840 5 0 7 chain 6401 chr17 81195210 + 52790322 52790545 LTR12D 1347 - 570 754 182018 38 43 0 28 18 18 23 51 55 22 chain 67857 chr17 81195210 + 52796125 52797005 L1PA10 4194 + 3277 4161 49304 61 0 2 312 0 4 386 0 3 61 2 1 9 4 1 33 1 0 11 chain 38301 chr17 81195210 + 52823159 52823648 MER9a3 513 - 21 513 71707 58 0 1 128 0 1 46 1 0 238 0 2 18 chain 5051 chr17 81195210 + 52826159 52826225 L1MA3 4352 - 1893 1959 194620 66 chain 22664 chr17 81195210 + 52839253 52839553 L1PB2 3958 + 2482 2775 117246 25 10 4 93 1 0 171 chain 110885 chr17 81195210 + 52843892 52845296 L1PA8 5853 - 0 1434 33971 29 0 3 61 1 0 19 8 7 46 1 0 8 1 0 39 0 1 32 2 0 44 1 0 88 0 8 12 4 5 442 0 2 21 0 4 478 6 24 61 chain 23937 chr17 81195210 + 52865235 52865500 AluY 311 + 20 301 110706 98 0 8 33 0 8 134 chain 4113 chr17 81195210 + 52872378 52872429 MER58B 340 + 281 332 205743 51 chain 139937 chr17 81195210 + 52876833 52878552 L1PA7 6471 + 4750 6469 26151 205 1 0 30 1 0 207 5 6 422 2 1 239 1 2 435 13 14 158 chain 32243 chr17 81195210 + 52882665 52883061 MER51B 395 + 0 395 80456 245 1 0 150 chain 40982 chr17 81195210 + 52884405 52884966 MER41A 554 - 0 554 67932 102 4 0 106 8 4 192 0 1 4 8 7 45 0 1 92 chain 30521 chr17 81195210 + 52892884 52893266 MLT2A1 477 + 0 382 83384 6 0 1 162 4 1 34 0 1 32 0 1 144 chain 134039 chr17 81195210 + 52893367 52895159 HERVL-int 5654 + 0 5654 27198 104 0 1 4 1 0 273 0 3861 417 2 1 182 8 0 53 4 7 170 6 4 15 5 6 131 0 1 42 6 9 289 8 11 12 0 1 60 chain 31189 chr17 81195210 + 52895159 52895587 MLT2A1 477 + 0 422 82183 171 16 13 20 7 8 26 0 1 4 1 0 142 4 0 37 chain 516241 chr17 81195210 + 52898021 52904152 L1PA6 6164 + 0 6146 5554 139 12 13 31 13 14 22 1 2 523 2 0 656 0 1 930 7 3 489 11 0 119 0 1 246 0 1 33 1 4 42 1 6 253 1 2 803 0 1 28 0 4 286 0 5 1168 2 1 176 5 13 131 chain 3940 chr17 81195210 + 52924304 52924351 MER44D 709 + 63 110 208279 47 chain 20537 chr17 81195210 + 52933753 52933973 AluYa5 310 + 79 298 125522 18 1 0 201 chain 3422 chr17 81195210 + 52936708 52936747 MER58B 340 - 19 58 216735 39 chain 121448 chr17 81195210 + 52953620 52955195 THE1B-int 1605 + 0 1598 30552 432 0 25 218 0 3 193 5 7 406 4 5 165 14 5 133 0 1 5 chain 28378 chr17 81195210 + 52962469 52962860 MLT2A1 477 + 0 393 91670 142 10 11 16 1 5 148 2 1 16 0 2 44 4 0 8 chain 35689 chr17 81195210 + 53009445 53009881 LTR2 463 - 9 446 75285 79 12 13 345 chain 51002 chr17 81195210 + 53010746 53011732 MER4A 717 - 0 717 58303 132 314 0 86 11 5 181 0 39 146 0 1 37 0 11 79 chain 21574 chr17 81195210 + 53042936 53043207 AluSc8 310 + 29 300 121869 96 1 3 43 2 0 129 chain 26056 chr17 81195210 + 53088885 53089201 LTR17 781 - 455 781 99804 23 0 11 7 1 0 285 chain 357324 chr17 81195210 + 53089515 53093720 HERV17-int 4347 - 0 4335 11425 32 16 116 447 0 1 253 0 5 179 0 1 159 8 7 838 0 1 94 15 17 438 8 9 26 1 0 256 2 1 49 1 0 59 0 1 4 0 1 534 0 12 438 0 9 93 0 2 126 2 1 26 2 0 34 5 4 12 0 3 32 1 0 15 chain 39393 chr17 81195210 + 53095363 53095855 LTR17 781 - 8 522 70174 35 1 23 139 4 3 246 0 1 67 chain 28877 chr17 81195210 + 53095902 53096320 LTR7B 505 - 11 505 89556 32 22 21 76 1 0 83 0 2 28 15 77 58 0 11 9 0 3 94 chain 4257 chr17 81195210 + 53105889 53105973 MER20 218 + 0 82 203780 13 25 23 46 chain 64207 chr17 81195210 + 53134913 53135760 L1PA8 5853 - 0 844 50912 93 2 1 17 3 2 15 6 7 19 1 3 5 1 0 12 2 1 66 9 7 43 1 0 34 5 4 331 0 1 104 0 1 78 chain 63848 chr17 81195210 + 53139451 53140224 L1PA7 6471 - 3 764 51079 10 4 1 320 1 0 135 8 0 295 chain 78489 chr17 81195210 + 53161369 53162219 L1PA3long 6157 - 526 1376 44276 850 chain 44830 chr17 81195210 + 53162219 53162721 L1PA3long 6157 + 5646 6149 63255 177 0 1 325 chain 9832 chr17 81195210 + 53163748 53163977 L1MA5A 2387 - 28 206 161439 4 0 1 14 1 0 10 1 0 9 45 25 66 27 0 11 3 0 38 chain 8724 chr17 81195210 + 53169389 53169669 L1PB1 5432 + 5175 5430 167068 45 104 89 17 3 1 5 1 0 14 3 1 23 1 0 23 1 0 11 1 0 14 1 0 8 1 0 4 chain 8754 chr17 81195210 + 53176755 53176902 Tigger3a 397 - 92 238 166898 44 2 0 22 19 20 60 chain 531862 chr17 81195210 + 53179490 53186228 L1PA7 6471 - 2 6471 3978 848 1 0 48 3 0 413 9 10 130 3 1 70 1 0 96 0 1 46 1 3 15 0 3 177 0 2 32 2 1 148 0 1 410 0 5 5 6 0 425 0 5 425 334 0 259 0 1 257 5 1 145 0 1 367 0 27 33 1 0 725 0 21 215 0 1 379 9 20 87 0 1 197 0 1 411 chain 3225 chr17 81195210 + 53186938 53186978 MLT1D 503 - 3 43 220508 40 chain 10969 chr17 81195210 + 53196325 53196450 L1PA5 6144 - 7 132 156322 125 chain 20749 chr17 81195210 + 53229807 53230174 THE1D 372 - 12 372 124791 20 4 3 93 0 6 45 52 58 60 18 0 75 chain 29391 chr17 81195210 + 53241795 53242112 AluYb8 318 - 3 318 87113 189 2 0 126 chain 4127 chr17 81195210 + 53275498 53275559 MER51A 677 - 447 498 205561 31 10 0 20 chain 22331 chr17 81195210 + 53292207 53292526 MER1B 344 - 5 321 118771 58 17 18 170 14 10 60 chain 24063 chr17 81195210 + 53298048 53298496 L1PB1 5432 - 10 417 109966 18 4 0 12 1 0 22 1 0 23 3 1 14 1 0 5 3 1 18 16 6 6 2 0 16 1 0 43 1 0 16 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 1 0 17 7 0 18 5 1 12 0 4 6 0 1 29 1 0 31 chain 82959 chr17 81195210 + 53303834 53304749 L1PA4 6152 - 81 996 42353 915 chain 5992 chr17 81195210 + 53304749 53304818 L1PA4 6152 + 6082 6151 185312 69 chain 21408 chr17 81195210 + 53310262 53310638 THE1D 372 + 0 372 122482 56 10 1 39 3 0 15 17 21 31 6 10 11 41 40 114 0 1 33 chain 3685 chr17 81195210 + 53341915 53341961 MER5B 177 - 7 53 212156 46 chain 26626 chr17 81195210 + 53449128 53449796 THE1B 368 + 0 368 97570 15 2 0 25 0 5 127 308 3 21 1 3 169 chain 113814 chr17 81195210 + 53449796 53451369 THE1B-int 1605 + 0 1605 33145 12 1 6 169 1 0 245 7 32 184 16 48 10 38 6 57 1 0 4 1 2 178 10 11 108 16 17 484 0 1 31 chain 26433 chr17 81195210 + 53463485 53463887 MSTA 426 + 0 414 98295 26 0 1 180 19 22 14 14 14 43 12 20 94 chain 12461 chr17 81195210 + 53503945 53504111 L1PA8 5853 - 0 164 150413 93 1 0 19 2 1 51 chain 24241 chr17 81195210 + 53513151 53513435 AluY 311 + 19 302 108984 114 1 0 169 chain 64658 chr17 81195210 + 53515315 53516052 L1PA6 6164 + 5424 6162 50720 119 0 1 618 chain 3934 chr17 81195210 + 53519588 53519630 MER66B 489 - 152 194 208361 42 chain 36338 chr17 81195210 + 53551157 53551594 LTR2 463 + 7 463 74453 126 1 0 29 7 27 274 chain 7138 chr17 81195210 + 53552356 53552453 HERVE_a-int 7009 + 135 228 176490 21 2 0 29 1 0 6 1 0 37 chain 21585 chr17 81195210 + 53564459 53564718 L1PA6 6164 + 5902 6160 121829 67 1 0 191 chain 558302 chr17 81195210 + 53579077 53585102 L1PA2 6032 + 1 6032 471 177 0 5 3633 0 1 2215 chain 16105 chr17 81195210 + 53611858 53612198 THE1B 368 - 29 366 138040 27 1 2 7 0 7 54 1 0 12 90 79 30 12 13 106 chain 23856 chr17 81195210 + 53620675 53620970 L1PA7 6471 - 2 293 111147 10 3 0 138 1 0 143 chain 188760 chr17 81195210 + 53633884 53636350 L1P1 4361 - 20 2165 20168 12 2 1 23 1 0 107 1 0 47 1 0 218 0 1 728 0 1 369 318 0 135 1 0 503 chain 161103 chr17 81195210 + 53636350 53638137 L1PA4 6152 + 4349 6137 23174 1463 0 1 324 chain 57121 chr17 81195210 + 53669058 53669894 L1PB3 3668 - 100 903 54451 31 17 9 25 1 0 6 1 0 9 30 12 85 10 9 4 0 1 86 1 0 153 0 3 53 0 2 16 2 0 64 4 0 12 2 0 157 1 0 66 chain 4288 chr17 81195210 + 53672162 53672224 MER5A 189 - 44 108 203365 24 1 0 7 1 4 29 chain 24312 chr17 81195210 + 53696550 53696860 AluSp 311 + 10 301 108594 122 19 0 169 chain 15944 chr17 81195210 + 53699024 53699378 THE1B 368 - 1 364 138539 55 7 6 18 0 2 44 47 52 10 4 5 6 1 0 32 11 0 11 7 18 25 17 20 59 chain 26062 chr17 81195210 + 53705357 53705730 THE1D 372 + 0 372 99785 185 40 39 148 chain 3532 chr17 81195210 + 53757657 53757728 MER20 218 + 43 116 214840 35 20 22 16 chain 19940 chr17 81195210 + 53775440 53775793 THE1B 368 - 0 368 127329 56 7 6 63 67 81 45 8 10 107 chain 20824 chr17 81195210 + 53812576 53812938 THE1C 375 - 0 359 124526 25 1 0 118 64 61 80 13 0 7 1 15 53 chain 21980 chr17 81195210 + 53814472 53814737 AluY 311 + 21 287 120313 111 0 1 154 chain 91651 chr17 81195210 + 53843632 53844630 L1PA3long 6157 - 8 1006 39070 998 chain 10922 chr17 81195210 + 53863748 53863870 L1PA5 6144 + 6021 6143 156520 122 chain 240964 chr17 81195210 + 53867046 53869676 L1PA3long 6157 + 3526 6156 16728 2630 chain 142896 chr17 81195210 + 53876676 53878479 L1PA7 6471 - 3769 5502 25664 69 24 0 288 0 1 963 49 1 26 6 5 56 11 12 11 0 1 300 chain 308016 chr17 81195210 + 53878480 53882230 L1PA7 6471 + 2712 6467 13084 791 1 0 501 9 6 4 1 0 173 0 4 306 0 8 956 0 1 35 14 9 115 0 3 122 1 0 10 7 5 370 0 1 283 5 6 46 chain 3965 chr17 81195210 + 53948117 53948163 MADE1 96 - 50 96 207904 46 chain 378287 chr17 81195210 + 53951692 53956232 L1PA6 6164 - 2 5590 10807 18 1 0 122 13 6 1038 6 1057 219 13 0 991 1 2 384 5 2 819 2 1 424 8 7 5 0 2 261 0 17 205 0 3 5 chain 5917 chr17 81195210 + 53962364 53962445 L1P3 4156 + 687 783 186020 58 1 16 22 chain 24454 chr17 81195210 + 53971346 53971759 L1PA16 3655 - 122 523 107786 26 6 12 34 26 6 52 10 0 8 5 15 90 10 8 77 0 4 69 chain 2643 chr17 81195210 + 53987693 53987742 MER52D 1964 - 815 850 231130 17 14 0 18 chain 455109 chr17 81195210 + 54016668 54022460 L1PA8 5853 + 51 5851 8575 21 2 0 10 1 0 13 52 16 191 5 9 78 0 2 7 9 7 420 0 3 197 0 1 279 0 1 77 1 4 33 0 1 376 0 1 110 0 1 6 0 1 102 6 0 23 0 2 23 0 4 86 4 0 144 0 9 62 1 0 110 0 4 285 11 12 152 0 4 171 0 1 83 1 5 17 1 0 179 0 2 476 1 2 71 0 1 381 5 6 150 0 1 54 0 3 151 0 1 314 0 2 73 0 2 58 16 14 226 0 8 12 1 0 119 0 1 42 1 0 44 2 0 70 12 10 52 2 1 19 1 0 57 2 3 31 chain 183911 chr17 81195210 + 54025098 54027399 L1PA8 5853 - 762 3074 20596 82 0 2 73 0 1 4 1 0 564 5 6 282 0 1 758 13 13 200 18 19 66 3 4 54 0 5 178 chain 2672 chr17 81195210 + 54027401 54027434 L1PA8 5853 + 5100 5133 230750 33 chain 5424 chr17 81195210 + 54027449 54027516 L1PA8 5853 + 5147 5214 190761 67 chain 46510 chr17 81195210 + 54027524 54028120 L1PA8 5853 + 5261 5853 61589 147 0 1 155 1 0 46 2 0 60 0 2 7 1 0 9 1 0 52 2 1 19 1 0 93 chain 47676 chr17 81195210 + 54029772 54030335 LTR19B 566 + 0 566 60712 210 0 1 302 0 1 15 0 1 36 chain 71151 chr17 81195210 + 54030335 54031216 THE1B-int 1605 + 723 1605 47865 876 0 1 5 chain 26345 chr17 81195210 + 54031216 54031565 THE1B 368 + 0 359 98635 44 0 15 104 1 0 34 3 0 97 1 0 65 chain 3908 chr17 81195210 + 54031565 54031609 L1PB1 5432 - 374 418 208733 44 chain 107687 chr17 81195210 + 54055118 54056622 THE1D-int 1627 - 0 1615 34801 114 1 0 176 3 11 37 15 12 239 5 6 265 28 25 46 2 0 6 12 14 88 0 1 29 26 30 74 3 109 107 1 0 200 1 0 26 chain 18169 chr17 81195210 + 54073258 54073468 L1PA7 6471 - 13 224 132411 142 0 1 68 chain 36763 chr17 81195210 + 54073468 54073895 L1PA7 6471 + 5817 6245 73856 245 0 1 182 chain 553469 chr17 81195210 + 54079762 54085977 L1PA3long 6157 + 8 6154 1006 11 0 1 553 0 1 674 0 1 334 71 0 112 0 1 630 1 0 393 0 1 457 1 0 715 0 1 548 7 6 802 1 0 905 chain 126557 chr17 81195210 + 54126755 54128125 L1PA2 6032 - 4 1374 28813 1370 chain 136449 chr17 81195210 + 54128125 54129595 L1PA2 6032 + 3212 4682 26755 1470 chain 459601 chr17 81195210 + 54135849 54142433 L1PA8A 6298 - 8 6258 8416 137 5 7 139 1 0 5 0 1 461 0 1 35 4 3 8 1 4 196 4 3 82 1 0 170 0 1 16 0 4 190 3 2 850 8 9 93 1 2 42 3 0 242 8 7 4 0 1 48 327 0 136 0 1 12 5 7 19 1 2 32 0 17 12 0 1 27 3 8 70 0 2 57 0 1 622 5 1 64 4 3 42 0 2 62 1 10 80 6 7 313 23 0 196 12 15 78 1 0 48 2 1 67 8 10 278 0 11 55 60 63 163 0 12 408 7 6 65 64 59 52 8 0 22 10 9 29 18 11 15 2 1 5 1 0 8 133 116 12 3 0 25 20 9 12 1 0 16 chain 3798 chr17 81195210 + 54145584 54145670 LTR33 499 - 6 93 210418 33 11 26 8 14 0 20 chain 43734 chr17 81195210 + 54147051 54147598 MER41A 554 - 7 554 64526 354 1 0 4 0 1 188 chain 28065 chr17 81195210 + 54150354 54150652 AluYa5 310 - 12 310 92772 298 chain 14156 chr17 81195210 + 54158478 54158651 MER50 708 - 28 201 144022 173 chain 15541 chr17 81195210 + 54173977 54174329 L1PA15 4387 + 4021 4351 139764 76 9 8 10 7 3 12 5 4 51 1 0 27 68 60 42 22 15 22 chain 3039 chr17 81195210 + 54201458 54201510 MER5A1 166 - 30 81 224220 12 6 5 34 chain 10591 chr17 81195210 + 54223063 54223201 THE1D-int 1627 - 5 145 157868 28 0 3 78 1 0 31 chain 110662 chr17 81195210 + 54264174 54265443 L1PA5 6144 + 4861 6135 34043 822 0 4 308 1 2 138 chain 28531 chr17 81195210 + 54266531 54266830 AluYa5 310 - 11 310 91046 299 chain 189283 chr17 81195210 + 54267371 54269425 L1HS 6032 - 2803 4856 20120 186 1 0 1867 chain 124143 chr17 81195210 + 54269425 54270775 L1PA2 6032 + 4681 6031 29431 1350 chain 5081 chr17 81195210 + 54275144 54275202 MER1B 344 - 0 58 194283 58 chain 175743 chr17 81195210 + 54287052 54289970 L1PB1 5432 - 10 2529 21369 18 1 0 12 1 0 22 1 0 17 0 1 6 2 0 14 1 0 5 3 1 18 28 16 11 1 0 18 4 5 19 4 2 16 2 1 52 2 0 9 2 0 3 2 0 9 1 0 13 1 0 20 1 0 9 79 2 117 0 5 39 14 13 30 0 2 183 1 0 85 0 1 24 374 8 488 4 1 114 0 1 168 0 4 68 8 9 11 2 4 218 0 61 60 0 1 459 0 2 24 chain 3868 chr17 81195210 + 54293075 54293119 MER45A 178 + 72 116 209337 44 chain 184682 chr17 81195210 + 54312906 54316074 L1PREC2 3366 - 363 3065 20526 32 51 34 15 3 1 15 4 1 5 2 0 11 30 22 13 3 0 4 1 0 43 9 8 47 2 0 142 7 0 42 330 0 178 1 2 190 96 15 128 1 13 270 5 6 63 11 9 9 0 1 37 22 0 157 0 1 172 12 13 28 0 8 8 1 0 6 4 0 5 1 2 414 1 4 78 6 9 92 6 1 65 5 0 116 9 8 60 2 0 26 1 2 71 chain 4192 chr17 81195210 + 54314086 54314165 MADE1 96 - 0 96 204661 20 21 38 38 chain 2948 chr17 81195210 + 54324448 54324480 Tigger8 508 - 289 321 226105 32 chain 38685 chr17 81195210 + 54338760 54339274 MLT2A2 560 - 0 560 71169 6 0 4 137 3 14 53 10 42 124 12 11 169 chain 22995 chr17 81195210 + 54351578 54351840 AluY 311 + 27 289 115642 8 1 0 97 0 1 156 chain 4872 chr17 81195210 + 54351899 54351962 MIRc 230 - 114 177 196566 63 chain 72132 chr17 81195210 + 54353233 54354113 L1PA6 6164 - 8 898 47418 88 5 0 213 0 1 20 6 12 103 16 24 429 chain 23386 chr17 81195210 + 54358171 54358512 THE1B 368 + 4 368 113729 40 0 6 6 0 9 107 1 0 26 35 45 44 2 1 80 chain 33762 chr17 81195210 + 54360644 54361248 L1PB1 5432 + 4865 5427 77997 141 1 0 19 8 6 72 1 0 11 3 0 24 1 0 8 1 0 11 19 13 50 2 1 16 1 0 43 1 0 8 62 46 12 2 0 24 1 0 21 1 0 13 1 0 10 1 0 8 2 0 5 chain 164764 chr17 81195210 + 54383757 54385600 L1PA4 6152 + 4308 6143 22684 699 0 1 896 9 0 239 chain 2816 chr17 81195210 + 54411460 54411496 L1ME1 1623 + 1448 1484 228508 36 chain 227641 chr17 81195210 + 54412167 54414763 L1PA6 6164 - 1079 3685 17440 289 0 7 427 0 4 440 0 1 262 4 1 699 0 1 475 chain 90997 chr17 81195210 + 54414764 54415812 L1PA6 6164 + 5092 6154 39295 184 0 9 30 1 4 366 0 1 119 0 1 348 chain 178914 chr17 81195210 + 54418099 54420557 L1PA13 3608 - 168 2626 21080 44 2 0 10 8 6 43 2 1 63 2 0 80 0 1 32 1 0 32 8 7 196 1 0 269 2 1 4 0 1 37 2 1 197 7 8 390 0 1 47 45 50 149 13 17 259 0 3 153 0 6 151 8 0 56 23 20 88 0 1 34 chain 125595 chr17 81195210 + 54422251 54423810 L1PA8 5853 - 0 1557 29214 93 1 0 19 2 1 40 23 22 47 0 1 22 2 0 44 1 0 531 0 1 21 0 2 668 0 1 6 1 0 38 chain 18617 chr17 81195210 + 54425798 54426184 L1PA11 4918 + 4200 4578 131169 48 1 2 13 13 14 52 3 0 53 10 12 43 1 12 4 1 0 22 2 0 13 1 0 20 48 35 11 1 0 13 2 0 11 chain 7614 chr17 81195210 + 54432117 54432354 L1MA6 2487 - 89 355 173448 18 129 158 90 chain 553848 chr17 81195210 + 54457662 54463842 L1PA3long 6157 + 5 6157 965 959 0 1 135 0 1 664 44 0 159 0 1 276 0 1 1313 0 2 586 0 2 163 6 13 69 5 6 1801 chain 63873 chr17 81195210 + 54467404 54468206 L1PA8 5853 - 0 796 51068 93 1 0 19 2 1 51 14 12 70 2 0 43 2 1 144 0 1 361 chain 385015 chr17 81195210 + 54476861 54482473 L1PB1 5432 - 8 5367 10607 4 1 0 16 1 0 13 1 0 14 0 3 4 1 0 24 2 0 14 45 31 5 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 17 12 8 1 0 24 132 23 599 15 10 73 0 1 7 0 1 95 2 1 148 0 1 365 0 1 50 110 14 104 0 1 5 1 0 112 18 21 29 21 11 140 1 0 408 0 3 35 15 17 101 2 1 231 35 18 178 0 1 80 1 2 11 18 25 4 1 0 475 0 40 80 0 7 36 0 4 127 17 9 14 1 0 296 15 17 332 0 6 125 85 85 126 0 2 5 6 5 322 55 0 9 chain 43723 chr17 81195210 + 54490488 54491083 L1PREC2 3366 - 837 1433 64540 70 13 25 6 12 0 376 6 7 112 chain 146517 chr17 81195210 + 54491646 54494278 L1MA2 4263 + 1818 4109 25088 29 13 16 14 1 2 5 1 0 10 17 6 70 2 0 128 59 40 58 3 5 33 308 0 45 30 35 62 0 9 143 16 4 5 1 0 17 1 5 85 5 3 107 17 0 14 0 14 128 0 2 343 0 2 38 0 1 31 1 0 109 0 11 120 2 0 17 7 3 75 1 0 48 1 0 79 20 17 77 84 82 91 14 7 42 1 0 4 chain 13902 chr17 81195210 + 54510839 54511177 L1PB1 5432 + 5114 5420 144909 24 2 1 7 1 0 10 17 11 29 0 1 15 1 0 8 2 1 16 1 0 9 1 0 34 1 0 10 73 56 24 1 0 21 1 0 13 1 0 16 chain 3950 chr17 81195210 + 54511224 54511269 MER63C 923 - 469 514 208137 45 chain 29975 chr17 81195210 + 54601315 54601667 L1PA5 6144 + 5775 6128 84889 216 7 8 129 chain 5594 chr17 81195210 + 54701212 54701307 MER58A 224 - 75 174 189149 16 9 14 61 1 0 8 chain 42680 chr17 81195210 + 54727313 54727816 L1PA6 6164 - 15 528 65798 128 1 11 374 chain 59327 chr17 81195210 + 54745420 54746230 Charlie3 2679 + 18 2595 53207 16 2 1 21 8 17 97 6 5 234 3 0 61 0 1747 173 0 16 189 chain 12836 chr17 81195210 + 54746320 54746486 MLT1B 390 - 46 223 148902 136 0 11 30 chain 29110 chr17 81195210 + 54749063 54749382 AluYa5 310 - 0 310 88503 178 9 0 132 chain 26871 chr17 81195210 + 54769699 54770001 AluSp 311 - 9 311 96736 302 chain 30986 chr17 81195210 + 54778016 54778355 L1PA4 6152 - 5 344 82539 339 chain 4726 chr17 81195210 + 54818752 54818919 MER33 330 - 125 312 198210 45 99 119 23 chain 14762 chr17 81195210 + 54819683 54819979 THE1B 368 - 61 368 142061 58 42 44 8 0 1 27 1 0 52 6 8 23 32 39 47 chain 22565 chr17 81195210 + 54823599 54823855 L1PA4 6152 + 5887 6143 117740 256 chain 8562 chr17 81195210 + 54830009 54830320 MER51A 677 + 372 659 167954 23 164 140 22 11 12 46 1 0 44 chain 2984 chr17 81195210 + 54832865 54832900 MIRb 242 - 106 141 225353 35 chain 26348 chr17 81195210 + 54834927 54835287 THE1A 353 + 0 353 98620 82 11 7 21 1 0 5 18 16 222 chain 127290 chr17 81195210 + 54835287 54836820 THE1A-int 1579 + 0 1531 28745 618 1 0 112 0 1 221 0 1 358 4 0 109 0 1 110 chain 14605 chr17 81195210 + 54867649 54867894 MER47A 366 - 0 270 142570 18 41 57 43 1 9 74 0 1 68 chain 3301 chr17 81195210 + 54870023 54870090 HAL1-2a_MD 234 - 89 147 218967 14 1 4 20 12 0 20 chain 2989 chr17 81195210 + 54904013 54904046 MER5A1 166 + 98 131 225260 33 chain 22383 chr17 81195210 + 54909317 54909606 AluSg7 307 - 18 307 118570 89 0 1 18 1 0 29 1 4 6 3 0 142 chain 22730 chr17 81195210 + 54917265 54917531 AluSp 311 + 6 288 116920 51 1 17 214 chain 8721 chr17 81195210 + 54997961 54998072 L1MB7 1623 - 1499 1611 167081 16 0 1 95 chain 170031 chr17 81195210 + 55007026 55009203 MER4-int 2692 + 115 2329 22047 442 0 10 64 0 1 227 0 2 29 3 0 29 0 1 168 18 24 24 0 1 443 0 4 130 0 5 63 1 0 7 0 2 101 0 1 237 0 2 56 0 1 71 46 51 18 chain 24283 chr17 81195210 + 55031638 55031939 AluSc 308 + 0 298 108749 29 3 0 269 chain 27953 chr17 81195210 + 55040582 55040953 MER51B 395 + 0 395 93157 40 7 26 179 1 0 125 0 6 19 chain 35465 chr17 81195210 + 55042945 55043402 LTR2 463 - 0 463 75602 177 0 4 79 1 0 73 20 23 107 chain 29617 chr17 81195210 + 55043402 55043764 PABL_A 660 + 283 644 86155 39 1 0 17 0 1 125 5 4 175 chain 7438 chr17 81195210 + 55045942 55046026 L1PA2 6032 - 6 90 174528 84 chain 86355 chr17 81195210 + 55047474 55048935 PABL_A-int 1935 + 555 1815 41017 122 0 1 207 0 1 102 1 0 83 314 6 91 0 1 95 1 6 24 0 1 26 1 0 189 5 103 89 0 3 21 4 3 86 chain 51942 chr17 81195210 + 55049864 55050511 PABL_A 660 + 0 660 57653 10 3 4 70 0 9 4 1 0 487 0 4 72 chain 24667 chr17 81195210 + 55057888 55058173 AluSp 311 + 21 306 106627 285 chain 25746 chr17 81195210 + 55063894 55064196 AluYk4 311 - 3 302 101101 14 3 0 285 chain 28622 chr17 81195210 + 55090613 55090913 AluYa5 310 - 10 310 90648 300 chain 30138 chr17 81195210 + 55094484 55094882 LTR7 482 + 0 477 84355 69 8 46 109 0 1 8 0 31 21 1 0 29 0 10 153 chain 23819 chr17 81195210 + 55098305 55098579 AluY 311 + 36 311 111366 96 0 1 178 chain 170660 chr17 81195210 + 55101845 55105014 MER41-int 2638 - 4 2551 21970 97 0 4 80 1 9 385 0 10 144 310 0 16 0 1 30 2 0 6 0 1 183 1 0 174 1 0 70 0 2 99 5 3 89 3 5 13 1 0 173 8 7 21 0 1 42 20 33 85 5 6 19 10 24 73 0 2 27 14 13 30 10 8 159 7 11 20 1 0 134 0 3 26 330 0 24 4 0 16 13 9 16 5 3 14 11 8 17 33 19 58 18 9 16 chain 12636 chr17 81195210 + 55105789 55105967 MER41B 635 - 457 635 149705 41 8 9 36 1 0 92 chain 15812 chr17 81195210 + 55105977 55106463 MSTA 426 + 208 424 138919 54 1 2 121 271 0 39 chain 10707 chr17 81195210 + 55134161 55134472 MER2 342 + 153 294 157385 89 170 0 52 chain 16481 chr17 81195210 + 55178192 55178397 AluSp 311 + 84 288 136977 191 1 0 13 chain 5173 chr17 81195210 + 55225005 55225111 MER21A 919 + 428 550 193323 12 16 27 29 10 15 39 chain 30930 chr17 81195210 + 55227813 55228223 MER50 708 - 14 633 82633 211 1 0 55 8 214 24 0 3 81 0 1 30 chain 22323 chr17 81195210 + 55237348 55237625 AluY 311 + 4 298 118807 119 0 7 130 1 9 6 0 2 21 chain 10294 chr17 81195210 + 55256214 55256344 MER2 342 + 131 262 159159 4 0 1 126 chain 6962 chr17 81195210 + 55277758 55277846 MER58A 224 - 6 94 177735 88 chain 5070 chr17 81195210 + 55296495 55296557 HY4 93 + 1 62 194419 56 1 0 5 chain 27445 chr17 81195210 + 55300361 55300663 AluYb9 318 + 0 300 94833 98 1 0 34 1 0 168 chain 22567 chr17 81195210 + 55316228 55316677 L1PB4 2604 + 2106 2548 117729 13 10 11 106 12 0 138 126 130 44 chain 4048 chr17 81195210 + 55447113 55447178 MIR 256 - 118 182 206660 40 7 6 18 chain 9608 chr17 81195210 + 55531026 55531147 MER85 139 + 5 139 162547 37 1 0 54 0 14 29 chain 24109 chr17 81195210 + 55545617 55545902 AluY 311 + 12 303 109696 69 0 7 45 1 0 170 chain 16826 chr17 81195210 + 55576141 55576345 L1PA3long 6157 - 10 215 136049 102 0 1 102 chain 3780 chr17 81195210 + 55627043 55627115 MIRb 242 - 136 205 210653 38 19 16 15 chain 13573 chr17 81195210 + 55679468 55679685 MER30 238 + 5 238 146080 105 2 0 11 2 17 36 24 0 11 0 27 26 chain 3152 chr17 81195210 + 55690699 55690733 MER81 114 - 14 48 221898 34 chain 25826 chr17 81195210 + 55695912 55696201 AluSc 308 - 18 307 100761 289 chain 13697 chr17 81195210 + 55771256 55771480 MER58B 340 + 49 271 145611 47 12 11 15 20 19 130 chain 2707 chr17 81195210 + 55781742 55781917 MER20B 722 + 539 721 230149 13 2 0 11 3 5 16 71 107 11 29 0 19 chain 25375 chr17 81195210 + 55787255 55787610 THE1C 375 + 0 360 102806 69 13 0 2 0 14 50 0 1 34 1 2 11 3 4 91 0 1 81 chain 5014 chr17 81195210 + 55798610 55798674 MER58A 224 - 11 75 194983 64 chain 11680 chr17 81195210 + 55798772 55799071 MER44A 345 - 8 345 153562 46 13 14 94 1 0 6 113 151 26 chain 24583 chr17 81195210 + 55832277 55832568 AluSp 311 + 14 303 107070 118 2 0 171 chain 17895 chr17 81195210 + 55866809 55867037 7SK 245 + 0 240 133112 122 7 19 99 chain 19092 chr17 81195210 + 55878887 55879154 MSTA 426 + 156 426 129836 155 17 20 95 chain 24275 chr17 81195210 + 55901789 55902077 AluSc5 308 + 20 308 108813 288 chain 4150 chr17 81195210 + 55919720 55919784 L1MB5 1630 - 54 116 205238 27 1 0 28 1 0 7 chain 66076 chr17 81195210 + 55923495 55924292 SVA_B 1603 + 824 1603 50065 20 26 20 15 4 0 42 4 0 40 5 1 641 chain 2512 chr17 81195210 + 55986655 55986712 MER3 215 - 64 122 232982 30 14 15 13 chain 25454 chr17 81195210 + 56005632 56005928 AluY 311 + 4 303 102436 128 0 1 103 0 2 65 chain 25302 chr17 81195210 + 56054937 56055231 AluSp 311 + 14 308 103219 294 chain 2890 chr17 81195210 + 56089351 56089644 HSMAR2 1300 + 12 305 82135 293 chain 45331 chr17 81195210 + 56090061 56091289 LTR71B 605 + 0 605 62680 134 1 0 8 11 4 207 1 3 117 618 1 131 chain 1775 chr17 81195210 + 56092336 56092516 HSMAR2 1300 + 1114 1300 82135 128 0 7 27 1 0 24 chain 4497 chr17 81195210 + 56096386 56096439 MER58B 340 + 286 339 200819 53 chain 15560 chr17 81195210 + 56106397 56106622 L1MC3 1789 + 1003 1228 139700 4 1 0 15 1 0 35 0 1 69 9 10 91 chain 11685 chr17 81195210 + 56113666 56113828 L1MB7 1623 + 1048 1203 153541 139 3 1 9 5 0 6 chain 23802 chr17 81195210 + 56122916 56123194 L1PA3long 6157 - 2 276 111468 146 1 0 59 3 0 69 chain 161222 chr17 81195210 + 56150628 56152611 SVA_D 2077 - 0 2059 23161 541 0 37 98 4 0 13 75 0 205 50 0 143 0 132 147 6 3 30 0 3 75 0 40 555 0 3 7 22 15 12 chain 4237 chr17 81195210 + 56151284 56151359 SVA_D 2077 - 566 640 81245 66 1 0 8 chain 1582 chr17 81195210 + 56151586 56151614 SVA_D 2077 - 739 767 81245 28 chain 6224 chr17 81195210 + 56176152 56176229 L1MA5A 2387 - 81 157 183375 10 1 0 66 chain 231448 chr17 81195210 + 56207984 56210576 L1PA4 6152 + 3551 6152 17231 387 1 2 1358 0 4 85 1 0 754 0 5 6 chain 148391 chr17 81195210 + 56219155 56220874 SVA_D 2077 + 0 2069 24829 542 0 40 183 30 27 6 0 3 107 0 85 41 1 2 50 0 1 133 2 225 624 chain 2506 chr17 81195210 + 56219880 56219910 SVA_D 2077 + 725 755 144445 30 chain 40631 chr17 81195210 + 56256562 56257100 MLT2A2 560 + 1 560 68395 168 12 11 16 13 24 186 0 11 143 chain 54413 chr17 81195210 + 56286027 56286613 SVA_A 1864 - 2 588 56085 586 chain 28762 chr17 81195210 + 56297812 56298112 AluYa5 310 - 10 310 90060 300 chain 56393 chr17 81195210 + 56298681 56299421 L1PA8 5853 - 0 733 54908 93 1 0 19 3 2 43 8 7 10 2 1 70 2 0 44 1 0 444 chain 44130 chr17 81195210 + 56335379 56335990 L1MA1 4479 - 341 934 64040 31 2 0 13 5 0 15 9 8 119 3 0 5 1 0 65 0 2 21 1 0 14 3 0 19 1 0 71 1 0 16 2 0 24 1 0 72 0 1 97 chain 23586 chr17 81195210 + 56436676 56436968 AluY 311 + 0 286 112651 39 0 1 82 11 4 160 chain 5857 chr17 81195210 + 56470414 56470484 Tigger2a 444 + 131 201 186624 70 chain 22909 chr17 81195210 + 56530422 56531100 L1MA6 2487 + 67 429 116066 12 7 5 4 1 0 32 0 2 107 7 4 5 1 0 74 323 13 24 1 0 80 chain 12379 chr17 81195210 + 56531458 56531593 SVA_E 1901 + 1764 1899 150714 135 chain 3840 chr17 81195210 + 56533648 56533698 L1MA6 2487 + 2339 2386 209780 40 3 0 7 chain 3358 chr17 81195210 + 56544010 56544048 MER3 215 - 125 163 217892 38 chain 26072 chr17 81195210 + 56571393 56571702 AluY 311 + 0 303 99738 126 5 0 87 1 0 90 chain 4850 chr17 81195210 + 56624479 56624536 MER5A1 166 + 9 66 196786 57 chain 22923 chr17 81195210 + 56680945 56681226 AluSc8 310 + 12 298 116001 113 1 4 149 0 2 18 chain 29901 chr17 81195210 + 56709948 56710350 LTR71A 459 + 0 438 85095 68 6 10 23 0 3 71 0 1 9 1 0 15 7 6 115 0 30 87 chain 18505 chr17 81195210 + 56715743 56716778 L1PB1 5432 + 5028 5397 131482 75 14 12 23 0 3 6 1 0 9 2 0 3 2 0 10 2 0 4 631 0 47 2 1 16 1 0 44 10 6 9 3 0 16 9 0 15 28 19 27 1 0 18 1 0 6 chain 24785 chr17 81195210 + 56724607 56724904 AluY 311 + 6 294 105965 14 10 1 273 chain 45954 chr17 81195210 + 56734981 56735665 LTR8 732 + 0 732 62076 19 0 1 10 0 9 116 0 7 79 0 2 62 16 43 154 0 5 19 65 62 144 chain 22965 chr17 81195210 + 56737483 56737769 AluSq2 311 + 0 291 115784 109 7 12 170 chain 23076 chr17 81195210 + 56745281 56745604 MER31A 484 + 9 348 115274 87 2 0 23 19 37 192 chain 18024 chr17 81195210 + 56749313 56749605 MER1B 344 - 8 303 132794 46 7 0 8 19 20 46 5 1 120 3 16 38 chain 44342 chr17 81195210 + 56755612 56756179 L1PA6 6164 + 5581 6149 63767 314 3 4 72 0 34 9 39 5 130 chain 4131 chr17 81195210 + 56756908 56756976 U1 164 - 23 90 205474 41 10 9 17 chain 34663 chr17 81195210 + 56764394 56764849 LTR3A 482 + 0 481 76672 157 6 15 23 0 14 172 0 2 23 1 0 11 0 2 62 chain 9953 chr17 81195210 + 56780262 56780377 L1PA5 6144 + 6004 6123 160814 84 0 4 31 chain 14387 chr17 81195210 + 56826523 56826728 MER30 238 + 18 238 143241 81 14 23 37 3 9 70 chain 24691 chr17 81195210 + 56845020 56845302 AluSp 311 - 29 311 106492 282 chain 30074 chr17 81195210 + 56852993 56853310 AluYb8 318 + 0 317 84589 317 chain 21898 chr17 81195210 + 56873086 56873413 L1PA15 4387 - 401 726 120635 54 1 0 31 12 10 17 0 2 36 2 3 15 16 14 143 chain 21182 chr17 81195210 + 56896870 56897616 MSTA 426 - 0 426 123267 102 16 24 51 441 111 30 0 1 101 0 1 5 chain 47665 chr17 81195210 + 56910768 56911437 L1PA16 3655 - 82 736 60724 157 1 0 125 3 1 53 6 0 33 1 0 142 7 0 78 7 9 56 chain 28519 chr17 81195210 + 56914100 56914400 AluYg6 310 + 0 300 91103 300 chain 517239 chr17 81195210 + 56923631 56929756 L1PA5 6144 - 3 6144 5461 6 4 0 104 1 0 33 39 5 8 0 34 411 1 2 1120 0 1 99 3 0 288 0 1 783 0 3 67 1 0 553 10 0 94 0 3 218 0 3 871 0 2 262 9 0 18 0 3 304 10 27 12 17 0 215 5 6 398 16 28 24 1 15 120 chain 6948 chr17 81195210 + 56947809 56947978 L1PA16 3655 - 36 194 177829 17 4 0 4 12 0 7 30 34 16 6 7 73 chain 4555 chr17 81195210 + 56949879 56949933 LTR24 460 - 0 54 200165 54 chain 7581 chr17 81195210 + 56973977 56974492 Tigger1 2417 + 805 1322 60373 108 0 2 407 chain 77073 chr17 81195210 + 56975640 56976529 L1PA6 6164 + 5275 6162 44930 556 0 1 323 3 0 7 chain 2046 chr17 81195210 + 56977108 56977247 Tigger1 2417 + 1593 1732 60373 139 chain 41829 chr17 81195210 + 56992405 56992954 MER41A 554 - 0 554 66854 50 7 11 400 5 6 87 chain 71336 chr17 81195210 + 57001934 57003187 L1PA8 5853 - 0 945 47777 93 1 0 19 2 1 52 8 6 74 2 0 45 1 0 469 2 1 82 303 3 100 chain 17359 chr17 81195210 + 57013184 57013372 L1PA3long 6157 - 0 188 134633 188 chain 26477 chr17 81195210 + 57019083 57019384 AluSq10 312 + 0 301 98139 301 chain 13235 chr17 81195210 + 57020039 57020195 L1PA3long 6157 + 6000 6157 147342 9 0 1 147 chain 4651 chr17 81195210 + 57023679 57023822 L1MB8 1703 - 684 857 199052 53 73 103 17 chain 20365 chr17 81195210 + 57027738 57028135 L1M2c 2366 - 209 595 126013 23 6 4 23 8 7 11 83 80 92 5 0 146 chain 24077 chr17 81195210 + 57036691 57036973 AluY 311 + 13 296 109886 119 0 1 163 chain 22172 chr17 81195210 + 57070333 57070668 THE1B 368 + 2 368 119482 42 11 26 102 1 0 25 35 52 119 chain 29830 chr17 81195210 + 57109604 57109914 AluYb8 318 + 0 310 85348 310 chain 16421 chr17 81195210 + 57129095 57129267 AluYa5 310 - 15 187 137150 172 chain 3822 chr17 81195210 + 57166647 57166717 MER3 215 - 0 85 210048 37 6 22 4 1 0 22 chain 21237 chr17 81195210 + 57176267 57176556 AluSc 308 + 5 293 123066 13 1 0 186 18 18 71 chain 6028 chr17 81195210 + 57176668 57176745 Tigger3c 601 + 293 370 185004 77 chain 4741 chr17 81195210 + 57206762 57206815 U2 167 - 114 167 198000 53 chain 3265 chr17 81195210 + 57215676 57215782 Tigger4a 237 + 0 141 219693 27 1 18 12 11 46 15 23 6 17 chain 3628 chr17 81195210 + 57244730 57244783 L1MA5A 2387 - 81 133 213195 11 2 1 40 chain 3882 chr17 81195210 + 57247630 57247748 MER53 195 - 27 151 209139 43 36 38 11 10 12 13 0 2 5 chain 25782 chr17 81195210 + 57248338 57248636 AluYk4 311 + 0 294 100953 126 4 0 168 chain 3198 chr17 81195210 + 57250388 57250423 LTR12C 1709 + 1051 1086 220972 35 chain 23477 chr17 81195210 + 57274211 57274499 AluSg7 307 - 3 299 113230 33 0 5 21 0 2 115 1 2 118 chain 8877 chr17 81195210 + 57278332 57278535 L1PB1 5432 - 10 193 166246 13 6 5 10 6 5 19 1 0 24 27 22 15 8 0 9 2 0 4 1 0 15 1 0 42 chain 26723 chr17 81195210 + 57307732 57308042 AluSp 311 - 0 311 97248 29 0 1 281 chain 6334 chr17 81195210 + 57320951 57321026 MER61B 427 - 352 427 182515 75 chain 28749 chr17 81195210 + 57321325 57321723 MER50 708 - 23 423 90127 39 12 13 117 1 2 60 0 1 87 9 8 73 chain 7451 chr17 81195210 + 57324611 57324834 L1MC1 2226 - 42 246 174435 27 70 62 12 3 0 19 19 14 4 1 0 54 2 0 12 chain 26925 chr17 81195210 + 57339274 57339562 AluYa5 310 - 7 292 96532 177 3 0 108 chain 23438 chr17 81195210 + 57351897 57352162 AluY 311 + 39 306 113431 93 0 1 26 0 1 146 chain 67981 chr17 81195210 + 57367467 57368278 LTR5_Hs 974 - 156 974 49254 41 0 19 223 0 1 208 3 0 60 18 0 74 0 8 184 chain 19805 chr17 81195210 + 57371712 57371947 AluYf5 307 + 74 307 127800 186 9 7 40 chain 6416 chr17 81195210 + 57378409 57378597 L1MA5A 2387 - 98 276 181900 29 48 45 28 8 0 27 8 6 20 7 10 13 chain 15217 chr17 81195210 + 57422259 57422457 MER1B 344 - 5 212 140725 10 0 1 46 3 15 47 4 0 88 chain 133481 chr17 81195210 + 57470887 57472439 SVA_D 2077 - 12 2015 27326 628 0 49 41 0 2 12 0 477 108 1 0 155 76 0 531 chain 3757 chr17 81195210 + 57471833 57471898 SVA_D 2077 - 1525 1590 172996 65 chain 19242 chr17 81195210 + 57489693 57489931 AluSp 311 + 8 295 129405 70 0 49 168 chain 45228 chr17 81195210 + 57493911 57494423 MER9a2 513 + 0 513 62795 383 0 1 129 chain 22451 chr17 81195210 + 57547683 57547966 AluSp 311 + 11 293 118240 33 17 16 233 chain 137903 chr17 81195210 + 57576808 57578525 SVA_D 2077 + 20 2077 26496 34 0 8 542 153 0 162 3 0 32 0 3 102 0 132 18 0 353 671 chain 3289 chr17 81195210 + 57577384 57577424 SVA_D 2077 + 564 604 195885 40 chain 4690 chr17 81195210 + 57577447 57577537 SVA_D 2077 + 472 564 152465 23 1 3 66 chain 12464 chr17 81195210 + 57614716 57614860 U4 144 - 0 144 150402 144 chain 12951 chr17 81195210 + 57631296 57631438 L1PA5 6144 + 5995 6137 148424 142 chain 17268 chr17 81195210 + 57632069 57632292 MER50B 698 - 25 248 134871 136 0 1 54 3 2 30 chain 4415 chr17 81195210 + 57666881 57667003 L1MC 810 - 320 441 201729 24 53 52 45 chain 6262 chr17 81195210 + 57670726 57670798 L1ME2z 1083 - 621 693 183070 72 chain 35971 chr17 81195210 + 57672896 57673365 LTR15 485 - 7 485 74927 21 0 1 14 2 0 5 1 0 158 0 4 95 0 6 20 5 7 21 4 0 22 0 1 27 0 2 74 chain 7422 chr17 81195210 + 57673366 57673457 Tigger2b_Pri 1066 + 195 289 174643 73 0 3 18 chain 5493 chr17 81195210 + 57677573 57677635 MER6B 211 - 0 62 190113 62 chain 16550 chr17 81195210 + 57790571 57790756 L1PA5 6144 + 5943 6128 136793 185 chain 22386 chr17 81195210 + 57792595 57792956 THE1D 372 - 2 366 118558 29 2 1 94 4 10 40 7 8 25 0 4 84 19 0 30 5 17 22 chain 2993 chr17 81195210 + 57819935 57819967 L1MC2 1988 - 10 42 225146 32 chain 21848 chr17 81195210 + 57860281 57860573 AluY 311 + 0 299 120825 33 9 16 69 1 0 13 1 2 166 chain 27722 chr17 81195210 + 57886856 57887152 AluYa5 310 - 0 296 93961 296 chain 23761 chr17 81195210 + 57894347 57894665 AluSp 311 + 0 304 111701 128 5 0 45 2 1 89 8 0 41 chain 25359 chr17 81195210 + 57925525 57925808 AluYf4 310 - 26 310 102894 80 0 1 203 chain 9238 chr17 81195210 + 57927308 57927428 MER4A 717 + 1 123 164360 46 0 2 74 chain 22887 chr17 81195210 + 57927455 57927749 AluYk4 311 + 0 295 116156 48 9 10 237 chain 12171 chr17 81195210 + 57958653 57958792 MER85 139 + 0 139 151534 139 chain 23107 chr17 81195210 + 57995302 57995581 AluSp 311 - 20 300 115106 218 6 7 55 chain 7422 chr17 81195210 + 58056764 58056855 Tigger2b_Pri 1066 - 777 871 174644 18 0 3 73 chain 35757 chr17 81195210 + 58056856 58057325 LTR15 485 + 0 478 75196 74 0 2 31 0 1 16 4 0 23 5 7 20 0 6 102 0 4 151 1 0 5 2 0 14 0 1 21 chain 6450 chr17 81195210 + 58059432 58059557 L1ME2z 1083 + 390 524 181641 72 38 47 15 chain 5176 chr17 81195210 + 58068464 58068541 MER58A 224 - 11 89 193283 43 3 4 31 chain 24897 chr17 81195210 + 58140096 58140419 THE1A 353 + 0 330 105369 80 6 7 22 2 1 28 0 8 74 1 0 110 chain 26251 chr17 81195210 + 58156462 58156774 AluY 311 + 0 297 99015 126 15 0 171 chain 78903 chr17 81195210 + 58170151 58171163 MER11A 1151 - 4 1151 44110 226 0 1 57 10 44 129 5 6 145 0 1 94 15 16 100 0 2 32 4 0 140 0 99 55 chain 25492 chr17 81195210 + 58208752 58209044 AluSp 311 - 19 311 102265 292 chain 17557 chr17 81195210 + 58230717 58230995 MER41C 542 + 237 542 134110 74 50 77 154 chain 15126 chr17 81195210 + 58324840 58325459 L1MA4 2864 - 1147 1432 140980 26 2 0 5 19 21 66 386 52 115 chain 3413 chr17 81195210 + 58368261 58368299 MER21B 843 + 646 684 216890 38 chain 23427 chr17 81195210 + 58384039 58384449 L1MA4 2864 + 845 1253 113491 144 5 9 4 1 0 32 67 65 109 3 0 45 chain 28633 chr17 81195210 + 58413794 58414104 AluYa5 310 + 0 309 90590 132 1 0 177 chain 196425 chr17 81195210 + 58417791 58420417 L1P2 5180 - 2786 5178 19470 761 0 3 103 239 5 285 1 0 97 0 1 126 1 0 220 1 0 6 1 0 224 1 0 48 0 1 210 6 9 52 6 5 44 2 1 43 6 5 143 chain 19806 chr17 81195210 + 58418655 58418878 L1P2 5180 - 3147 3375 126909 181 0 5 42 chain 59752 chr17 81195210 + 58420417 58421110 L1P1 4361 + 2385 3079 52909 361 0 1 332 chain 28935 chr17 81195210 + 58446352 58446654 AluYa5 310 - 8 310 89293 302 chain 8476 chr17 81195210 + 58452033 58452194 Tigger3b 1229 - 888 1171 168425 50 1 0 15 4 0 8 25 152 58 chain 25822 chr17 81195210 + 58471042 58471340 AluSp 311 - 9 307 100781 298 chain 23967 chr17 81195210 + 58487751 58488034 AluY 311 + 4 288 110528 128 0 1 155 chain 18031 chr17 81195210 + 58491252 58492195 LTR39 781 - 373 717 132775 12 0 8 7 7 0 35 26 25 29 23 26 39 285 0 60 317 0 103 chain 24983 chr17 81195210 + 58495319 58495603 AluSp 311 - 12 296 104893 284 chain 24432 chr17 81195210 + 58496815 58497109 AluY 311 + 0 298 107900 52 1 5 241 chain 27063 chr17 81195210 + 58540029 58540334 AluYf4 310 + 0 305 96070 305 chain 470816 chr17 81195210 + 58559820 58565687 L1PA6 6164 - 8 5637 8006 46 0 14 159 0 2 210 0 2 216 0 3 275 0 1 25 302 0 397 0 2 432 7 11 254 12 9 79 4 7 43 0 19 325 0 4 343 0 4 335 0 1 242 0 2 292 1 5 71 0 1 664 2 1 89 0 2 681 0 1 6 1 0 354 chain 31066 chr17 81195210 + 58568357 58568764 THE1B-int 1605 + 16 422 82408 103 12 11 151 2 0 5 0 2 134 chain 3245 chr17 81195210 + 58573198 58573240 L1MB7 1623 + 1388 1429 220109 34 1 0 7 chain 25357 chr17 81195210 + 58584118 58584408 AluSc 308 + 2 292 102906 290 chain 11778 chr17 81195210 + 58599077 58599250 MER30 238 + 38 238 153144 72 4 28 19 1 7 28 3 0 46 chain 26200 chr17 81195210 + 58604695 58604991 AluY 311 + 0 301 99200 37 0 1 94 0 1 6 0 3 159 chain 15420 chr17 81195210 + 58609302 58609504 L1M1 2793 + 2362 2562 140131 72 1 0 118 1 0 10 chain 131541 chr17 81195210 + 58628238 58630253 SVA_F 1814 + 335 1814 27737 502 62 13 5 1 0 25 0 1 67 401 14 251 100 0 601 chain 20670 chr17 81195210 + 58628903 58629301 SVA_F 1814 + 966 1138 91928 118 226 0 54 chain 2096 chr17 81195210 + 58629021 58629046 SVA_F 1814 + 1260 1284 126243 14 1 0 10 chain 15853 chr17 81195210 + 58629078 58629247 SVA_F 1814 + 1091 1260 138794 169 chain 4765 chr17 81195210 + 58629552 58629652 SVA_F 1814 + 988 1037 125530 44 51 0 5 chain 2594 chr17 81195210 + 58629596 58629625 SVA_F 1814 + 1159 1187 166337 18 1 0 10 chain 25304 chr17 81195210 + 58650911 58651413 LTR35A 463 + 0 463 103207 14 4 0 12 4 0 11 1 0 19 40 28 25 0 1 15 19 5 40 1 0 41 2 0 28 29 24 13 1 0 11 5 2 24 2 0 5 0 11 12 8 6 116 chain 5105 chr17 81195210 + 58653831 58653897 L1M4 1397 - 476 542 194030 66 chain 3808 chr17 81195210 + 58691747 58691792 LTR12C 1709 + 654 699 210264 45 chain 3492 chr17 81195210 + 58698668 58698730 L1MA9 1812 - 826 890 215489 31 1 0 6 5 6 13 0 2 6 chain 4168 chr17 81195210 + 58719734 58719820 MER57A1 433 - 25 110 204999 37 25 24 24 chain 25155 chr17 81195210 + 58738292 58738601 AluSp 311 + 0 303 103984 128 6 0 175 chain 7347 chr17 81195210 + 58739695 58739786 U6 107 - 2 95 175114 25 0 2 66 chain 13159 chr17 81195210 + 58741882 58742103 Tigger4a 237 - 0 237 147617 54 5 13 24 24 32 42 2 4 5 2 0 63 chain 9388 chr17 81195210 + 58752112 58752335 LTR12F 595 - 361 528 163621 19 0 9 21 0 9 32 3 1 22 25 0 16 49 2 36 chain 24975 chr17 81195210 + 58759101 58759390 AluSp 311 - 23 311 104934 168 1 0 120 chain 24380 chr17 81195210 + 58762545 58762835 AluSp 311 + 0 306 108197 52 0 18 62 1 0 45 1 0 129 chain 43809 chr17 81195210 + 58781318 58781916 Tigger2 2703 + 914 1514 64439 158 0 2 97 1 0 27 0 1 45 18 17 196 7 8 49 chain 7905 chr17 81195210 + 58826302 58826407 HY1 111 - 0 111 171612 81 1 7 23 chain 514846 chr17 81195210 + 58838578 58844690 L1PA6 6164 - 2 6164 5688 145 1 0 6 6 7 56 0 6 109 1 2 516 1 0 62 0 8 404 0 1 468 7 11 1111 0 3 15 0 1 40 9 7 783 0 4 11 0 2 58 0 1 782 5 6 101 0 5 421 3 0 186 0 17 297 11 10 97 16 15 181 0 4 203 chain 32421 chr17 81195210 + 58845569 58846014 MLT2A1 477 + 0 475 80165 169 4 1 215 7 0 6 14 54 30 chain 85545 chr17 81195210 + 58848917 58849926 L1PA6 6164 - 2 1016 41324 186 2 1 80 3 0 721 1 10 16 chain 8056 chr17 81195210 + 58856578 58856714 Tigger4b 360 + 55 220 170724 46 15 44 53 2 0 5 0 2 15 chain 5198 chr17 81195210 + 58863592 58863657 tRNA-Lys-AAA 73 + 0 67 193055 34 0 2 31 chain 233906 chr17 81195210 + 58870790 58874255 L1PB1 5432 - 14 3138 17094 14 1 0 13 1 0 21 1 0 24 2 0 13 13 10 12 21 11 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 9 17 12 8 1 0 22 7 0 16 3 0 6 0 1 132 0 1 8 0 1 329 11 12 201 0 1 303 1 2 251 6 0 125 7 1 210 0 1 300 312 0 321 0 3 49 1 0 19 4 3 72 0 4 94 1 5 130 0 5 17 3 5 194 chain 15344 chr17 81195210 + 58874904 58875082 L1PA7 6471 - 9 187 140358 178 chain 49436 chr17 81195210 + 58892253 58892816 L1PA5 6144 + 5576 6142 59429 106 0 6 440 3 0 14 chain 8513 chr17 81195210 + 58929495 58929593 L1PA2 6032 - 2 100 168226 98 chain 52136 chr17 81195210 + 58931268 58931859 L1PA5 6144 - 5 598 57535 223 0 2 368 chain 24367 chr17 81195210 + 58931863 58932134 L1PA5 6144 + 5290 5562 108279 4 0 1 267 chain 4804 chr17 81195210 + 58940704 58940825 Tigger1 2417 - 4 118 197318 17 48 41 56 chain 559539 chr17 81195210 + 58958801 58964835 L1PA2 6032 - 1 6028 386 5878 7 0 149 chain 25507 chr17 81195210 + 58998730 58998997 AluYa5 310 + 38 305 102193 267 chain 43844 chr17 81195210 + 59006932 59007409 L1PA3long 6157 - 0 477 64394 477 chain 118903 chr17 81195210 + 59013231 59014555 L1PA4 6152 - 12 1335 31452 138 1 0 1185 chain 13158 chr17 81195210 + 59031468 59031743 L1PREC2 3366 - 403 652 147620 11 4 1 29 2 0 16 7 2 16 30 21 12 3 0 6 1 0 43 1 0 42 14 12 38 chain 29624 chr17 81195210 + 59052343 59052661 AluYb8 318 - 2 318 86136 8 2 0 308 chain 64887 chr17 81195210 + 59053802 59054521 SVA_B 1603 - 3 720 50617 592 1 0 32 1 0 93 chain 244179 chr17 81195210 + 59054880 59057568 L1PA3long 6157 - 15 2712 16547 230 0 1 1723 0 9 6 1 0 728 chain 9268 chr17 81195210 + 59061849 59062023 L1MA3 4352 - 0 165 164225 22 2 0 5 2 0 10 10 9 18 8 6 22 2 0 73 chain 4728 chr17 81195210 + 59069822 59069876 L1PA16 3655 + 3524 3578 198190 54 chain 3185 chr17 81195210 + 59071576 59071614 Charlie4a 502 + 225 263 221216 38 chain 33987 chr17 81195210 + 59083157 59083531 L1PA2 6032 - 0 374 77632 374 chain 25027 chr17 81195210 + 59121530 59121827 AluY 311 + 4 302 104649 128 0 1 169 chain 6526 chr17 81195210 + 59128574 59128781 L1MD2 1676 + 1452 1652 181044 44 80 74 36 22 21 25 chain 4478 chr17 81195210 + 59183953 59184006 MER44B 551 + 476 529 201038 53 chain 77137 chr17 81195210 + 59185992 59187563 L1PB1 5432 - 10 1207 44892 18 1 0 13 1 0 21 1 0 5 1 0 19 2 0 14 65 50 46 1 0 15 2 1 50 421 70 84 0 2 164 0 2 111 1 8 103 9 6 238 6 5 74 7 0 78 chain 556112 chr17 81195210 + 59187590 59193599 L1PA2 6032 + 0 6016 711 708 1 8 5300 chain 37723 chr17 81195210 + 59229378 59229865 LTR12F 595 - 0 595 72524 22 0 1 30 0 6 321 14 5 25 2 112 73 chain 24391 chr17 81195210 + 59249714 59250003 AluY 311 + 0 288 108127 23 0 2 109 3 0 154 chain 25774 chr17 81195210 + 59291763 59292076 AluY 311 + 0 307 100995 126 6 0 181 chain 28618 chr17 81195210 + 59306540 59306914 Tigger1 2417 + 708 1082 90667 51 0 1 15 0 1 62 0 1 133 4 5 92 4 0 13 chain 34695 chr17 81195210 + 59314458 59314978 LTR12F 595 + 0 561 76632 25 0 1 78 20 88 18 13 5 67 21 0 106 1 0 4 0 1 47 1 2 119 chain 23040 chr17 81195210 + 59318796 59319085 AluY 311 + 6 288 115445 117 5 0 10 2 0 155 chain 22065 chr17 81195210 + 59322389 59322732 THE1C 375 - 30 375 119942 127 34 32 5 0 2 64 5 6 21 0 1 87 chain 649 chr17 81195210 + 59345857 59345908 L1MB2 1706 - 77 127 144500 6 0 1 11 1 0 13 1 0 19 chain 25299 chr17 81195210 + 59346468 59346775 AluSp 311 - 5 311 103229 180 2 1 125 chain 2241 chr17 81195210 + 59346782 59346958 L1MB2 1706 - 458 633 144500 44 3 1 65 0 1 64 chain 26804 chr17 81195210 + 59351322 59351613 L1PA4 6152 - 1 292 96966 291 chain 39272 chr17 81195210 + 59361361 59361935 LTR12_ 688 + 0 688 70365 180 0 24 43 52 43 51 0 2 60 6 103 125 2 3 18 1 0 36 chain 24234 chr17 81195210 + 59397760 59398054 AluY 311 + 0 300 109027 162 7 13 125 chain 6321 chr17 81195210 + 59405747 59405844 MLT1A0 366 - 18 118 182634 33 0 2 13 1 0 21 5 7 24 chain 11814 chr17 81195210 + 59436651 59436853 LTR54B 464 - 0 198 152969 25 9 10 34 1 0 36 1 0 10 1 0 20 0 1 21 10 7 34 chain 5300 chr17 81195210 + 59502685 59502823 MER20 218 + 14 161 192015 14 62 71 62 chain 25975 chr17 81195210 + 59511004 59511371 Tigger4 2445 - 1913 2261 100120 15 12 1 280 7 1 11 2 0 40 chain 30436 chr17 81195210 + 59582698 59583016 AluYb8 318 + 0 318 83554 318 chain 22909 chr17 81195210 + 59585828 59586188 THE1D 372 - 0 372 116070 32 1 0 65 1 2 49 17 18 11 29 39 59 0 1 96 chain 32931 chr17 81195210 + 59615796 59616605 Tigger1 2417 + 654 1170 79320 108 1 6 73 17 20 16 0 1 42 6 7 128 6 7 6 0 5 20 321 12 65 chain 5479 chr17 81195210 + 59618781 59618849 L1PA16 3655 - 1659 1727 190227 68 chain 22927 chr17 81195210 + 59642775 59643105 L1PA8 5853 + 5530 5853 115981 34 1 0 46 2 0 69 15 13 48 3 2 18 1 0 93 chain 73051 chr17 81195210 + 59643418 59644217 L1PA4 6152 + 5352 6151 47003 799 chain 22519 chr17 81195210 + 59682715 59682950 AluYb8 318 + 81 316 117946 235 chain 21914 chr17 81195210 + 59726506 59726867 MER47A 366 + 0 366 120571 18 48 47 38 1 2 127 0 4 82 4 5 43 chain 130935 chr17 81195210 + 59741529 59743033 L1PA7 6471 - 1070 2590 27877 37 0 1 1362 0 15 105 chain 86610 chr17 81195210 + 59743033 59744383 L1PA7 6471 + 5409 6465 40868 214 0 4 118 311 0 567 12 29 117 4 0 7 chain 417571 chr17 81195210 + 59750418 59755327 L1PA6 6164 + 4 6159 9591 246 1 0 537 0 17 126 1 0 509 7 12 559 1 6 249 0 6 54 1 2 72 0 4 580 0 15 192 0 1 4 8 6 8 0 1 8 0 1 236 1 4 248 19 1201 408 0 8 708 0 1 126 chain 22975 chr17 81195210 + 59758239 59758586 THE1C 375 - 6 370 115736 20 1 0 107 44 58 38 0 4 137 chain 26075 chr17 81195210 + 59768299 59768607 L1PA5 6144 + 5838 6144 99726 156 2 0 150 chain 35829 chr17 81195210 + 59780723 59781233 L1PA15 4387 - 427 940 75095 37 0 1 32 2 0 75 0 2 75 0 1 4 4 5 61 6 7 101 0 2 69 1 0 36 2 0 5 chain 23795 chr17 81195210 + 59781234 59781568 L1P4 1494 - 208 521 111499 17 0 1 135 21 0 27 1 0 133 chain 4382 chr17 81195210 + 59814542 59814624 L1M4c 1769 + 1654 1735 202164 9 8 0 7 0 8 10 1 0 4 0 1 37 1 0 5 chain 4208 chr17 81195210 + 59840322 59840368 L1MA7 2200 + 1867 1913 204440 46 chain 112730 chr17 81195210 + 59850640 59851953 L1PA6 6164 + 4872 6162 33469 342 28 4 503 0 1 440 chain 77983 chr17 81195210 + 59872954 59874010 L1MA2 4263 - 192 1232 44521 12 8 1 13 1 0 80 24 22 137 6 5 5 2 0 211 4 1 553 chain 64889 chr17 81195210 + 59896109 59897393 L1MA3 4352 + 3403 4352 50614 10 1 0 4 0 1 25 1 4 104 308 0 319 0 2 20 7 8 183 1 0 4 0 1 4 46 21 64 1 0 23 0 2 58 2 0 22 1 0 6 1 0 27 2 1 12 6 2 22 chain 45090 chr17 81195210 + 59902675 59903469 L1PA13 3608 + 2811 3548 62950 203 1 10 104 54 18 13 1 0 61 5 3 46 16 14 52 1 0 56 1 0 5 2 0 46 2 0 6 2 0 17 2 1 17 0 3 11 18 7 11 17 10 10 2 1 12 chain 8601 chr17 81195210 + 59919345 59919473 L1MA5 2750 + 2486 2612 167724 35 8 7 36 1 0 48 chain 20012 chr17 81195210 + 59923314 59923552 AluY 311 + 53 291 127105 79 0 1 116 1 0 42 chain 8027 chr17 81195210 + 59982156 59982289 Tigger6a 1079 - 12 146 170892 76 1 0 5 17 18 5 0 1 29 chain 3446 chr17 81195210 + 59988665 59988725 Charlie1a 1436 + 1328 1387 216276 26 11 10 23 chain 22389 chr17 81195210 + 59992899 59993201 AluY 311 + 2 305 118538 116 13 0 14 0 1 66 0 1 36 7 19 50 chain 17134 chr17 81195210 + 59993209 59993481 L1PA16 3655 + 2094 2368 135221 118 49 50 34 0 1 71 chain 4132 chr17 81195210 + 59997389 59997449 MER3 215 - 78 135 205457 8 3 0 49 chain 25540 chr17 81195210 + 60010956 60011451 L1PREC2 3366 - 332 787 102057 10 0 1 13 9 7 25 29 15 11 3 0 29 2 0 16 7 2 17 32 24 10 3 0 4 1 0 43 2 1 42 14 12 173 chain 27933 chr17 81195210 + 60026165 60026464 AluYa5 310 + 0 297 93233 118 2 0 179 chain 19859 chr17 81195210 + 60064533 60064789 AluSg7 307 + 18 275 127623 113 10 11 133 chain 75874 chr17 81195210 + 60098048 60098888 SVA_D 2077 - 0 836 45562 18 2 0 658 11 8 4 0 1 147 chain 21045 chr17 81195210 + 60124745 60125080 L1PA8 5853 + 5524 5853 123750 40 1 0 44 3 1 66 33 31 33 3 2 19 1 0 32 2 0 6 0 2 4 0 1 48 chain 3472 chr17 81195210 + 60126851 60126893 MER58A 224 - 133 175 215785 42 chain 24174 chr17 81195210 + 60145716 60145996 AluY 311 + 0 296 109349 131 0 17 130 1 0 18 chain 58194 chr17 81195210 + 60150343 60150994 SVA_B 1603 + 872 1602 53870 7 4 0 14 0 83 626 chain 26331 chr17 81195210 + 60165961 60166272 AluSp 311 - 0 311 98689 311 chain 3964 chr17 81195210 + 60166699 60166745 MIRb 242 + 83 129 207921 46 chain 8794 chr17 81195210 + 60199680 60199780 HY3 101 + 0 100 166673 100 chain 23061 chr17 81195210 + 60208910 60209207 AluSg4 309 + 2 298 115350 201 10 9 86 chain 26177 chr17 81195210 + 60218713 60219025 AluYb9 318 + 7 318 99291 111 1 0 200 chain 13175 chr17 81195210 + 60221024 60221184 MER61E 571 + 0 173 147568 82 1 14 77 chain 38178 chr17 81195210 + 60224665 60225307 LTR7B 505 + 0 505 71872 10 0 2 172 100 1 25 34 0 19 2 0 5 29 23 65 0 1 102 0 1 79 chain 5259 chr17 81195210 + 60227796 60227949 MER53 195 - 0 195 192422 20 41 46 21 26 63 45 chain 23778 chr17 81195210 + 60254594 60254885 AluSg7 307 - 15 307 111605 160 0 1 131 chain 24120 chr17 81195210 + 60274273 60274563 AluSp 311 - 21 311 109638 290 chain 24050 chr17 81195210 + 60280947 60281240 AluSq2 311 + 8 302 110042 125 0 1 168 chain 4408 chr17 81195210 + 60285100 60285184 MLT1J 494 - 304 387 201834 12 23 22 49 chain 6609 chr17 81195210 + 60286848 60286952 L1PA16 3655 - 579 685 180390 49 16 18 39 chain 12405 chr17 81195210 + 60299580 60299749 MER44A 345 - 26 190 150614 66 1 0 9 4 0 89 chain 22860 chr17 81195210 + 60305710 60305957 L1PA3long 6157 + 5910 6157 116292 247 chain 4106 chr17 81195210 + 60335981 60336031 MER41B 635 - 81 131 205854 50 chain 57160 chr17 81195210 + 60382355 60383277 L1PB1 5432 - 8 902 54427 4 1 0 16 1 0 12 1 0 22 1 0 24 3 1 13 1 0 4 3 1 19 9 0 12 2 0 5 11 10 44 1 0 16 2 1 53 2 0 8 19 16 5 1 0 21 3 0 12 1 2 41 1 0 43 10 12 42 0 1 145 23 23 87 0 1 178 chain 30753 chr17 81195210 + 60384209 60384655 L1PB 1623 - 99 525 82949 8 1 0 9 10 6 12 3 0 5 1 0 30 2 1 7 1 0 145 9 0 203 chain 14151 chr17 81195210 + 60401212 60401377 L1P3 4156 + 3059 3224 144034 165 chain 30960 chr17 81195210 + 60401380 60401789 L1PA8 5853 + 5440 5853 82586 46 0 8 70 1 0 23 0 2 20 2 0 70 1 0 9 2 1 51 2 1 19 1 0 40 0 1 52 chain 265807 chr17 81195210 + 60401792 60404724 L1PA4 6152 + 3211 6146 15402 729 0 1 121 0 1 59 0 1 2023 chain 29026 chr17 81195210 + 60417005 60417357 THE1A 353 + 0 353 88867 110 1 0 212 0 2 29 chain 28290 chr17 81195210 + 60419108 60419463 THE1B 368 - 0 368 91983 176 2 0 23 1 0 73 0 1 36 0 15 44 chain 333006 chr17 81195210 + 60422189 60426892 L1PB1 5432 - 14 4549 12090 14 1 0 12 1 0 22 1 0 20 58 46 8 3 0 16 11 10 34 6 5 10 2 1 51 17 11 14 7 6 24 3 0 8 11 10 382 0 1 83 0 1 148 0 5 278 1 0 4 157 9 30 0 1 24 0 10 384 0 3 119 0 2 540 5 0 138 0 4 430 0 1 320 12 19 53 17 16 39 5 6 294 0 3 144 0 1 79 0 8 86 64 44 49 22 10 156 6 9 40 4 5 65 1 0 170 chain 433493 chr17 81195210 + 60434866 60440497 L1PA8 5853 + 252 5853 9225 18 27 14 17 3 7 120 1 22 52 17 1 58 1 0 117 15 15 50 1 0 4 0 1 1276 17 0 67 0 4 699 8 9 67 2 1 54 0 1 29 0 4 327 0 1 480 0 1 224 0 2 301 0 1 4 1 0 195 1 0 388 0 1 79 0 3 43 2 0 159 40 7 389 1 0 45 2 0 72 1 0 12 9 0 6 0 8 29 10 26 91 chain 8115 chr17 81195210 + 60446734 60446824 L1PA2 6032 + 5942 6032 170412 90 chain 16535 chr17 81195210 + 60456084 60456295 L1PA7 6471 + 6267 6470 136823 40 9 1 162 chain 37979 chr17 81195210 + 60458360 60458784 L1PA4 6152 - 0 424 72161 424 chain 4929 chr17 81195210 + 60460465 60460527 U7 62 + 1 62 195941 24 1 0 37 chain 249236 chr17 81195210 + 60477595 60480481 L1PA5 6144 - 4 2832 16296 608 31 2 52 32 2 1902 0 1 261 chain 4479 chr17 81195210 + 60485883 60485968 MER3 215 - 8 105 201021 7 1 0 13 16 29 48 chain 23505 chr17 81195210 + 60508245 60508514 AluSp 311 - 31 300 113101 269 chain 3298 chr17 81195210 + 60514458 60514494 Tigger1 2417 - 643 679 219026 36 chain 2858 chr17 81195210 + 60517681 60517731 MADE1 96 + 29 95 227689 13 5 21 32 chain 26395 chr17 81195210 + 60522335 60522665 L1PA7 6471 + 6141 6470 98431 180 7 6 143 chain 25405 chr17 81195210 + 60528504 60528808 AluSp 311 - 9 311 102660 170 2 0 132 chain 20663 chr17 81195210 + 60535392 60535678 AluSz6 309 - 15 299 125095 166 2 0 22 0 9 7 10 1 79 chain 6325 chr17 81195210 + 60550960 60551039 MER5A 189 + 108 187 182591 79 chain 25265 chr17 81195210 + 60564981 60565282 AluSp 311 - 9 310 103391 301 chain 5138 chr17 81195210 + 60595358 60595423 L1MB3 1562 - 1367 1434 193685 47 0 2 18 chain 9167 chr17 81195210 + 60622659 60622762 Harlequin-int 5206 + 485 588 164727 103 chain 47716 chr17 81195210 + 60638194 60638761 L1PA4 6152 - 0 571 60677 6 0 5 139 0 7 2 7 0 95 1 0 317 chain 24221 chr17 81195210 + 60669317 60669619 AluSp 311 - 16 311 109084 13 2 0 140 0 1 16 6 0 125 chain 13980 chr17 81195210 + 60669847 60672909 Tigger3b 1229 - 71 1149 144652 20 9 8 18 1 0 82 2731 745 73 1 0 62 4 6 13 34 37 14 chain 9443 chr17 81195210 + 60686028 60686141 THE1C 375 - 259 375 163349 52 0 3 61 chain 22689 chr17 81195210 + 60710591 60710883 AluSc8 310 + 10 304 117128 122 0 3 5 16 15 149 chain 28884 chr17 81195210 + 60741319 60741619 AluYa5 310 - 10 310 89518 300 chain 14942 chr17 81195210 + 60763331 60763531 MER1B 344 - 0 204 141495 58 17 21 125 chain 27508 chr17 81195210 + 60772733 60773542 LTR12F 595 + 0 595 94631 57 0 4 12 59 0 27 0 85 26 13 28 47 0 64 34 29 19 76 3 0 28 310 0 88 chain 25209 chr17 81195210 + 60849458 60849813 THE1B 368 + 0 365 103689 169 1 0 34 7 11 10 10 18 64 7 6 53 chain 287003 chr17 81195210 + 60860620 60863901 L1PA6 6164 + 2883 6160 14222 110 0 1 195 0 1 81 0 2 577 0 1 714 1 0 83 0 1 30 8 7 896 6 1 571 3 0 6 chain 29972 chr17 81195210 + 60866142 60866455 AluYb8 318 + 0 313 84901 313 chain 13526 chr17 81195210 + 60894452 60894629 L1MA2 4263 + 3806 3986 146257 67 2 6 87 1 0 20 chain 3517 chr17 81195210 + 60907731 60907778 Charlie1 1172 - 443 528 215120 37 0 38 10 chain 22283 chr17 81195210 + 60927682 60927932 AluSc 308 + 58 308 118984 250 chain 9639 chr17 81195210 + 60951217 60951388 L1MA5A 2387 - 94 232 162402 63 30 2 10 3 0 37 2 0 26 chain 4219 chr17 81195210 + 60976434 60976486 LTR12B 2670 - 500 552 204307 52 chain 43656 chr17 81195210 + 61032694 61033237 MLT2A2 560 + 0 560 64621 406 0 11 72 0 1 39 0 5 26 chain 46945 chr17 81195210 + 61053940 61054521 LTR10C 591 + 0 584 61263 34 2 0 86 16 19 371 0 2 72 chain 32727 chr17 81195210 + 61073575 61073997 MER57A1 433 + 0 431 79645 188 0 11 83 2 0 149 chain 23385 chr17 81195210 + 61092684 61092959 L1PA5 6144 - 4 278 113737 255 1 0 19 chain 27917 chr17 81195210 + 61135939 61136480 L1PREC2 3366 - 330 812 93294 26 6 4 35 37 20 29 8 6 10 6 1 18 55 23 9 0 5 44 1 0 40 1 0 14 2 0 41 1 0 126 0 1 17 2 0 13 chain 7270 chr17 81195210 + 61143247 61143370 AluJb 308 - 9 106 175650 14 5 0 45 21 0 38 chain 158054 chr17 81195210 + 61167578 61169396 L1PA5 6144 - 0 1823 23584 11 1 4 225 13 18 599 3 1 626 2 1 338 chain 3592 chr17 81195210 + 61174772 61174821 MADE1 96 - 48 96 213798 22 1 0 26 chain 12808 chr17 81195210 + 61174826 61175025 MER30 238 - 0 213 149023 100 2 0 6 4 0 15 1 22 20 3 2 48 chain 8417 chr17 81195210 + 61185398 61185526 MER85 139 - 0 138 168739 17 19 29 92 chain 11868 chr17 81195210 + 61187806 61187957 MLT1A1 405 - 39 187 152749 31 1 0 56 1 0 57 1 0 4 chain 23719 chr17 81195210 + 61201044 61201361 AluSg7 307 - 4 307 111946 39 0 2 49 17 1 212 chain 22381 chr17 81195210 + 61247218 61247500 AluYc 301 + 8 281 118581 112 0 2 110 11 0 49 chain 24559 chr17 81195210 + 61289244 61289525 L1PA6 6164 - 2 282 107197 4 1 0 276 chain 294202 chr17 81195210 + 61305724 61310087 L1PA10 4194 - 33 4019 13752 11 1 0 34 3 0 468 0 2 187 0 1 220 5 8 26 1 2 15 0 1 56 0 1 166 8 0 16 17 0 163 337 0 78 0 5 38 1 0 33 1 0 156 1 2 220 6 21 188 0 2 41 0 1 178 3 1 152 10 17 21 0 2 172 3 2 478 4 8 335 6 10 70 1 0 37 0 1 27 2 0 85 3 1 7 7 0 15 1 0 4 3 0 6 1 0 7 1 0 4 8 13 11 2 0 16 49 25 8 1 0 15 2 0 17 10 9 4 1 0 9 22 16 9 2 0 7 3 0 14 2 0 11 chain 23736 chr17 81195210 + 61316026 61316387 THE1D 372 - 0 372 111855 32 1 0 107 1 0 4 0 1 34 28 34 49 4 5 39 0 5 62 chain 13578 chr17 81195210 + 61348819 61349026 L1PA8 5853 - 5 208 146065 88 1 0 19 2 1 46 4 1 14 5 4 23 0 2 5 chain 4874 chr17 81195210 + 61350847 61350930 Charlie1b 519 - 367 452 196553 39 1 0 24 8 11 11 chain 420113 chr17 81195210 + 61376133 61381903 L1PA8 5853 - 6 5452 9531 87 1 0 19 2 1 45 4 2 14 1 0 28 6 5 38 2 0 43 2 1 477 11 2 75 2 0 805 14 22 76 4 0 201 0 2 990 0 1 352 0 1 244 1 0 104 0 2 69 0 4 42 1 2 67 20 0 135 308 0 334 0 5 385 8 9 48 13 21 142 0 1 62 0 3 116 2 1 5 0 1 14 39 40 41 9 12 9 1 4 21 0 4 51 58 39 122 chain 22712 chr17 81195210 + 61405145 61405395 L1PA3long 6157 - 8 258 117024 250 chain 8108 chr17 81195210 + 61405864 61406141 L1MA7 2200 + 1871 2103 170442 78 2 0 26 147 104 24 chain 23833 chr17 81195210 + 61419882 61420154 AluY 311 + 27 300 111289 105 0 1 167 chain 50561 chr17 81195210 + 61454367 61455073 THE1D-int 1627 - 781 1585 58608 70 24 39 26 16 16 90 6 5 124 0 81 73 0 1 41 0 2 236 chain 4897 chr17 81195210 + 61471584 61471828 L1MC4a 1092 - 764 1001 196299 20 53 46 19 102 103 19 1 0 30 chain 22609 chr17 81195210 + 61528342 61528619 AluSp 311 - 15 300 117546 56 3 11 218 chain 152695 chr17 81195210 + 61533164 61535051 SVA_D 2077 + 0 2074 24267 14 4 0 45 0 2 43 0 27 376 0 37 143 0 40 168 0 83 38 0 51 127 49 0 62 36 65 57 0 12 11 50 9 664 chain 2160 chr17 81195210 + 61534122 61534151 SVA_D 2077 + 1321 1350 77155 29 chain 2497 chr17 81195210 + 61534233 61534269 SVA_D 2077 + 1029 1067 73850 7 0 2 29 chain 3469 chr17 81195210 + 61534337 61534387 SVA_D 2077 + 1135 1185 73850 50 chain 36318 chr17 81195210 + 61537627 61538140 MER41C 542 + 6 535 74482 43 0 1 17 0 8 13 4 8 55 18 19 118 0 1 25 1 2 219 chain 24140 chr17 81195210 + 61550590 61550873 AluSp 311 - 18 300 109520 161 1 0 121 chain 14323 chr17 81195210 + 61582907 61583156 MSTA 426 + 148 420 143484 20 1 3 45 0 2 7 2 5 8 3 0 10 1 2 6 1 0 40 3 23 18 10 9 74 chain 5465 chr17 81195210 + 61613650 61613720 MER45A 178 - 7 77 190363 70 chain 3570 chr17 81195210 + 61616512 61616555 MIRc 230 + 68 111 214128 43 chain 21762 chr17 81195210 + 61623332 61623618 AluY 311 + 0 300 121167 17 0 2 44 0 17 42 9 4 174 chain 23040 chr17 81195210 + 61643477 61643747 AluY 311 + 28 298 115444 270 chain 23506 chr17 81195210 + 61680314 61680601 AluY 311 + 1 288 113092 71 0 3 68 3 0 145 chain 3635 chr17 81195210 + 61718908 61718948 MADE1 96 + 56 96 213048 40 chain 7051 chr17 81195210 + 61721909 61721996 Charlie1a 1436 + 1318 1405 177106 87 chain 5539 chr17 81195210 + 61726375 61726470 MER3 215 + 13 107 189666 46 6 0 6 7 12 30 chain 28058 chr17 81195210 + 61741320 61741630 AluY 311 + 0 306 92792 133 5 1 172 chain 4700 chr17 81195210 + 61806620 61806673 MER66C 541 - 118 171 198537 53 chain 21156 chr17 81195210 + 61831195 61831440 AluSg 306 + 10 255 123352 245 chain 12377 chr17 81195210 + 61847069 61847238 MER30 238 - 39 238 150725 52 9 39 108 chain 21131 chr17 81195210 + 61874473 61874733 AluSp 311 + 0 303 123444 15 0 44 111 1 0 133 chain 24185 chr17 81195210 + 61890103 61890395 AluSc5 308 + 1 291 109298 63 2 0 227 chain 23670 chr17 81195210 + 61920720 61921017 AluSq2 311 + 8 308 112204 99 1 0 26 0 1 144 1 4 26 chain 22462 chr17 81195210 + 61936014 61936288 AluSg7 307 - 23 296 118190 152 0 1 67 2 0 53 chain 16205 chr17 81195210 + 61951847 61952038 L1PA3long 6157 + 5967 6155 137733 176 4 1 11 chain 5601 chr17 81195210 + 62013159 62013231 L1PB 1623 - 1436 1511 189067 57 0 4 9 1 0 5 chain 26424 chr17 81195210 + 62088487 62089539 L1MA8 2339 + 1478 2045 98327 53 638 162 70 4 5 72 4 0 54 0 3 5 3 0 20 8 4 32 1 0 51 1 0 36 chain 37474 chr17 81195210 + 62115122 62115686 MER51A 677 + 0 658 72852 132 7 102 115 9 8 54 0 5 27 14 15 15 13 12 94 9 4 75 chain 23294 chr17 81195210 + 62191061 62191339 AluSg7 307 - 27 305 114234 153 0 1 16 2 1 107 chain 27157 chr17 81195210 + 62201730 62202096 THE1B 368 + 0 368 95732 15 2 0 25 0 5 127 9 8 188 chain 23938 chr17 81195210 + 62213554 62213837 AluSg7 307 - 22 307 110705 17 1 3 265 chain 3367 chr17 81195210 + 62218843 62218884 LTR54 533 + 425 467 217720 37 0 1 4 chain 35888 chr17 81195210 + 62256439 62256973 LTR12F 595 + 0 588 75025 54 0 4 17 0 110 25 65 7 147 0 1 30 3 0 193 chain 8831 chr17 81195210 + 62261324 62261461 L1MB8 1703 - 627 759 166483 83 19 14 35 chain 23656 chr17 81195210 + 62315810 62316171 THE1C 375 - 0 375 112277 95 1 2 32 49 60 5 0 2 179 chain 21104 chr17 81195210 + 62363194 62363500 THE1B 368 + 0 317 123543 70 0 2 97 1 0 29 41 51 68 chain 25428 chr17 81195210 + 62364516 62364810 AluSq10 312 - 17 311 102558 294 chain 25410 chr17 81195210 + 62379185 62379485 AluYa5 310 + 13 310 102635 51 2 0 41 1 0 205 chain 3016 chr17 81195210 + 62398294 62398327 MER20 218 - 135 168 224689 33 chain 5763 chr17 81195210 + 62402274 62402343 MER41B 635 + 478 547 187514 69 chain 81061 chr17 81195210 + 62506990 62508048 MER11C 1089 - 26 1089 43158 143 1 0 182 0 1 38 1 0 7 0 4 93 6 4 19 38 40 146 1 0 24 1 0 45 1 4 61 0 1 251 chain 7590 chr17 81195210 + 62563695 62563803 MER30 238 - 6 148 173609 74 0 6 14 3 31 17 chain 45963 chr17 81195210 + 62573154 62573675 L1PA5 6144 + 5609 6137 62069 155 0 7 366 chain 24493 chr17 81195210 + 62585586 62585978 MER1A 529 + 6 451 107579 18 27 22 28 10 0 8 2 53 79 16 27 161 0 6 43 chain 53995 chr17 81195210 + 62597410 62598435 L1PB1 5432 + 4568 5424 56369 59 3 0 60 28 22 389 0 1 4 153 11 20 1 0 4 27 30 52 2 1 10 7 6 44 1 0 19 2 0 9 8 1 14 2 0 8 1 0 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 6 chain 150789 chr17 81195210 + 62605078 62606873 L1PA7 6471 + 4621 6459 24503 57 1 28 502 1 0 258 0 5 20 0 1 10 0 2 88 7 11 8 0 5 36 1 0 655 17 18 134 chain 27907 chr17 81195210 + 62609891 62610293 MER1A 529 - 79 529 93337 9 1 0 33 0 1 165 2 3 103 3 5 44 1 12 12 7 0 7 0 41 15 chain 4642 chr17 81195210 + 62618976 62619152 L1MC3 1789 - 347 519 199149 17 47 56 21 41 31 6 3 0 41 chain 7523 chr17 81195210 + 62673702 62673851 MER33 330 + 74 221 174022 49 3 0 7 1 5 31 11 14 16 6 0 25 chain 17550 chr17 81195210 + 62710462 62710718 AluSp 311 + 61 298 134125 47 4 5 110 16 0 54 5 1 20 chain 119638 chr17 81195210 + 62712114 62713479 SVA_D 2077 + 0 2073 31164 4 1 0 6 1 0 6 1 0 12 0 11 400 0 116 341 11 595 582 chain 22532 chr17 81195210 + 62733529 62733790 AluSp 311 - 49 311 117884 150 0 1 111 chain 6415 chr17 81195210 + 62769382 62769556 L1PB1 5432 + 5238 5388 181905 41 2 1 21 67 45 24 1 0 18 chain 22727 chr17 81195210 + 62790782 62791066 AluSp 311 - 14 298 116943 131 0 1 37 1 0 3 1 0 45 0 1 66 chain 19000 chr17 81195210 + 62823672 62824239 L1MB7 1623 - 194 736 130112 7 1 0 3 1 0 4 0 1 44 117 108 14 128 106 19 0 10 60 9 8 8 1 0 43 2 1 106 chain 3885 chr17 81195210 + 62866731 62866779 MIR 256 - 130 178 209092 48 chain 77331 chr17 81195210 + 62870378 62871232 SVA_C 1631 + 647 1631 44815 182 0 133 56 1 0 601 2 0 12 chain 5617 chr17 81195210 + 62910943 62911011 L1MA4 2864 + 2537 2605 188904 68 chain 6193 chr17 81195210 + 62922005 62922080 MER41B 635 + 165 250 183637 21 0 10 54 chain 79031 chr17 81195210 + 62926139 62927101 LTR5_Hs 974 + 0 974 44040 287 1 2 533 5 12 37 2 0 20 0 6 77 chain 27823 chr17 81195210 + 62944697 62944992 AluYd8 298 + 0 295 93619 295 chain 16098 chr17 81195210 + 62946455 62946685 THE1B 368 - 126 368 138069 45 2 0 14 1 0 4 0 1 4 3 2 117 5 20 35 chain 3151 chr17 81195210 + 62948725 62948780 MLT1B 390 + 12 59 221908 10 6 0 5 2 0 32 chain 19174 chr17 81195210 + 62950795 62951045 AluY 311 + 9 287 129600 30 0 30 63 0 1 5 8 5 144 chain 13470 chr17 81195210 + 63015401 63015641 L1MA2 4263 + 3877 4104 146447 61 5 1 16 16 14 85 20 13 37 chain 5074 chr17 81195210 + 63079815 63079889 MER3 215 - 108 181 194362 56 6 5 12 chain 27355 chr17 81195210 + 63080069 63080390 L1PA6 6164 + 5839 6162 95096 312 0 2 9 chain 26975 chr17 81195210 + 63089701 63090004 AluYf5 307 - 4 307 96356 303 chain 90907 chr17 81195210 + 63091843 63092971 L1PA8A 6298 + 5155 6290 39324 198 0 1 13 6 9 70 0 1 35 3 0 6 1 3 79 0 2 450 3 4 264 chain 26818 chr17 81195210 + 63112682 63113031 THE1C 375 + 0 350 96915 180 6 7 163 chain 13313 chr17 81195210 + 63114803 63115050 L1PB1 5432 - 182 416 147037 6 0 3 4 1 0 16 2 1 52 2 0 9 5 1 10 23 21 13 3 0 11 3 0 87 chain 33753 chr17 81195210 + 63155015 63155457 LTR7 482 + 0 474 78016 75 1 0 25 22 16 134 0 30 35 0 9 150 chain 27233 chr17 81195210 + 63177069 63177496 L1PA15 4387 - 31 451 95486 27 5 2 12 3 1 44 6 3 50 1 0 9 4 0 17 7 6 49 0 1 4 1 0 27 1 0 33 0 1 24 0 1 12 0 6 91 chain 4163 chr17 81195210 + 63196025 63196077 L1MB8 1703 - 338 390 205054 52 chain 82555 chr17 81195210 + 63232903 63233932 MER11B 1079 + 27 1053 42516 224 0 1 12 3 0 46 0 4 354 1 0 98 6 0 113 0 1 48 0 1 124 chain 33480 chr17 81195210 + 63259041 63259480 L1PA16 3655 + 3141 3578 78441 60 1 0 82 9 7 268 0 1 19 chain 4784 chr17 81195210 + 63276480 63276542 L1MB3 1562 - 10 71 197524 29 1 0 32 chain 11043 chr17 81195210 + 63296179 63296338 MLT1B 390 + 216 376 156043 11 11 13 132 1 0 4 chain 13582 chr17 81195210 + 63311172 63311628 L1PB1 5432 + 5020 5429 146045 41 49 42 11 9 0 20 1 0 8 3 2 12 19 13 43 1 0 7 1 0 18 11 10 32 89 74 17 1 0 22 1 0 12 1 0 10 1 0 11 1 0 4 chain 7742 chr17 81195210 + 63339887 63339996 L1PA8 5853 + 5657 5763 172650 25 1 0 11 1 0 47 2 1 22 chain 2615 chr17 81195210 + 63354373 63354421 MLT2C1 407 - 0 49 231496 12 6 7 30 chain 24627 chr17 81195210 + 63354532 63354955 MSTA 426 - 0 426 106844 117 1 0 28 0 1 23 71 63 35 1 6 8 1 2 30 8 13 100 chain 7402 chr17 81195210 + 63365249 63365680 L1MA3 4352 - 70 178 174752 22 2 0 24 320 0 57 1 0 5 chain 3188 chr17 81195210 + 63409595 63409631 Tigger1 2417 - 2330 2366 221180 36 chain 4116 chr17 81195210 + 63416709 63416775 MADE1 96 - 14 96 205692 10 1 0 6 0 1 4 3 19 42 chain 19829 chr17 81195210 + 63423896 63424141 L1P5 443 + 192 437 127717 245 chain 19579 chr17 81195210 + 63424446 63424796 L1PB1 5432 + 5103 5422 128436 11 1 0 24 1 0 9 1 0 10 6 2 8 2 0 69 1 0 44 1 0 16 1 0 6 16 6 19 2 0 5 2 1 13 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 20661 chr17 81195210 + 63441913 63442201 L1PA8 5853 + 5564 5846 125101 24 0 1 4 1 0 15 2 0 69 3 2 11 1 0 49 3 2 19 1 0 86 chain 129103 chr17 81195210 + 63479893 63481368 SVA_D 2077 + 6 2077 28292 25 5 0 5 15 0 24 0 2 154 1 0 326 0 40 118 0 40 138 0 535 664 chain 8986 chr17 81195210 + 63483624 63483749 MSTB 430 - 13 146 165681 52 0 3 55 1 6 17 chain 14637 chr17 81195210 + 63517108 63518168 MLT1C 463 + 0 463 142466 118 851 254 91 chain 19816 chr17 81195210 + 63564110 63564398 AluSc8 310 + 11 303 127764 61 7 10 41 3 0 8 1 4 41 11 12 115 chain 22848 chr17 81195210 + 63570758 63571035 AluSq2 311 - 8 286 116356 174 0 1 103 chain 20339 chr17 81195210 + 63594443 63594715 AluSq2 311 + 22 296 126112 110 21 23 141 chain 17377 chr17 81195210 + 63616219 63616550 L1PB1 5432 + 5021 5327 134571 82 1 0 10 1 0 17 5 4 15 1 0 9 18 12 50 2 1 16 1 0 40 7 6 13 24 12 19 chain 39447 chr17 81195210 + 63647076 63647752 L1PB1 5432 - 10 650 70096 18 1 0 12 2 1 21 7 6 9 2 1 8 2 0 15 1 0 7 2 0 27 14 1 16 1 0 44 1 0 15 3 2 50 17 11 12 1 0 8 1 0 21 5 0 6 3 8 50 19 16 255 chain 25787 chr17 81195210 + 63714241 63714542 AluSq2 311 + 0 300 100923 135 1 0 165 chain 4387 chr17 81195210 + 63725517 63725573 MADE1 96 - 2 90 202110 36 0 32 20 chain 40812 chr17 81195210 + 63754983 63755533 MER41A 554 + 0 554 68157 435 34 39 6 1 0 74 chain 104170 chr17 81195210 + 63777289 63778935 L1PA16 3655 + 1898 3589 35698 74 42 63 35 12 13 85 11 5 66 8 6 24 8 7 251 9 3 36 0 4 103 2 1 106 1 2 74 1 4 19 32 38 74 13 11 8 0 3 78 8 13 96 7 6 80 16 14 115 5 6 45 7 31 80 3 0 12 chain 9541 chr17 81195210 + 63812430 63812608 L1PB1 5432 - 12 168 162877 16 1 0 12 1 0 20 1 0 26 2 0 14 1 0 5 2 0 30 14 1 13 3 2 17 chain 3521 chr17 81195210 + 63821520 63821559 MER1B 344 - 264 303 215047 39 chain 43144 chr17 81195210 + 63822929 63823470 MLT2A2 560 + 0 560 65239 399 3 14 52 0 8 87 chain 177617 chr17 81195210 + 63827988 63830562 L1PA14 3548 + 953 3485 21199 338 6 3 209 14 5 36 0 1 412 10 7 239 1 0 170 6 8 117 0 3 28 8 7 123 0 1 4 0 1 11 0 1 11 10 0 35 2 1 4 0 1 113 0 9 87 3 1 14 28 26 14 16 12 105 2 0 5 2 0 16 2 0 6 1 0 84 7 6 104 1 0 11 5 1 36 4 2 10 2 1 6 1 0 16 1 0 41 6 0 10 1 0 20 chain 113048 chr17 81195210 + 63832914 63834224 SVA_B 1603 + 0 1603 33361 19 23 38 139 1 0 517 0 281 603 2 0 6 chain 15464 chr17 81195210 + 63853232 63853421 MER107 203 + 12 203 140006 102 2 1 61 0 3 24 chain 3404 chr17 81195210 + 63875603 63875642 MLT1D 503 + 463 502 217009 39 chain 217942 chr17 81195210 + 63899664 63902540 L1PA7 6471 + 3891 6464 18006 512 0 12 1207 0 2 168 0 1 150 0 1 53 323 0 114 0 5 198 1 0 150 chain 145457 chr17 81195210 + 63932908 63934550 SVA_D 2077 + 11 2077 25262 5 2 0 463 0 39 169 0 40 105 0 122 39 1 0 40 0 178 96 0 1 43 1 0 1 0 49 37 1 0 639 chain 42453 chr17 81195210 + 63939550 63940078 L1PA10 4194 - 2821 3350 66074 46 4 6 167 1 0 310 chain 20242 chr17 81195210 + 63952262 63952502 L1PB1 5432 + 4858 5098 126406 240 chain 28316 chr17 81195210 + 63958714 63959070 THE1B 368 + 2 368 91882 11 2 0 24 0 5 99 0 4 25 1 0 136 0 4 58 chain 6060 chr17 81195210 + 63978186 63978340 L1MA3 4352 - 0 145 184741 21 30 25 16 5 4 4 1 0 15 9 7 53 chain 17485 chr17 81195210 + 63991843 63992181 THE1B 368 + 22 368 134301 84 10 11 17 1 2 31 71 78 61 7 6 56 chain 3640 chr17 81195210 + 64048367 64048414 MER47A 366 - 284 331 212970 47 chain 8558 chr17 81195210 + 64054572 64054685 L1PA16 3655 + 2195 2309 167976 44 1 2 68 chain 22983 chr17 81195210 + 64057961 64058335 THE1D 372 + 0 372 115703 13 0 2 17 1 0 24 10 1 17 29 31 79 8 14 5 1 0 21 1 0 148 chain 2699 chr17 81195210 + 64059485 64059537 L1PB3 3668 + 3541 3588 230237 25 7 3 13 1 0 6 chain 144541 chr17 81195210 + 64071813 64073880 L1PBa1 4058 + 12 2054 25392 5 3 0 19 10 0 10 19 16 120 12 12 64 1 0 77 6 5 211 3 1 4 1 0 10 1 0 44 15 14 29 12 13 439 4 3 40 9 13 88 20 19 101 6 11 74 2 0 148 2 1 64 1 0 6 1 0 50 5 0 331 chain 28817 chr17 81195210 + 64074680 64075102 L1PBa 3878 - 2155 2565 89813 100 2 0 10 30 8 160 4 0 6 0 4 103 0 12 7 chain 139020 chr17 81195210 + 64075624 64077289 L1PA7 6471 + 4809 6469 26296 126 3 1 103 2 1 34 0 1 522 6 4 20 2 0 199 0 1 648 chain 4237 chr17 81195210 + 64078175 64078224 U5 65 + 1 50 204056 49 chain 12465 chr17 81195210 + 64091514 64091893 L1MA8 2339 + 2009 2339 150396 90 2 4 11 27 7 38 7 4 26 15 9 11 112 90 40 chain 22498 chr17 81195210 + 64096263 64096544 AluY 311 + 10 305 118031 18 0 18 229 1 0 13 3 0 17 chain 17807 chr17 81195210 + 64101307 64101604 L1MA3 4352 + 0 290 133384 15 44 42 98 1 0 25 4 0 110 chain 15326 chr17 81195210 + 64106812 64107076 L1PA14 3548 + 3243 3483 140407 4 1 0 94 5 2 36 4 2 12 1 0 5 1 0 16 1 0 9 8 0 32 6 0 10 1 0 18 chain 546249 chr17 81195210 + 64151222 64157960 L1PA7 6471 + 11 6470 1916 392 4 0 261 6 20 528 1 5 338 0 1 197 0 1 15 0 4 859 8 0 608 316 3 342 0 2 659 1 0 160 0 1 118 0 10 90 1 0 597 0 4 400 0 6 344 0 1 160 2 0 121 0 1 42 1 2 167 chain 12984 chr17 81195210 + 64201020 64201426 L1M1 2793 + 654 1029 148297 6 2 0 34 117 82 15 19 18 16 0 10 4 1 0 53 15 12 55 21 23 18 4 3 26 chain 3892 chr17 81195210 + 64214716 64214809 L1MC4 1079 + 714 805 208991 21 33 31 39 chain 29493 chr17 81195210 + 64240800 64241231 MER4A1 472 + 0 472 86660 15 8 10 16 6 13 126 16 52 170 7 3 67 chain 18651 chr17 81195210 + 64249322 64250050 MER4B 649 - 77 569 131084 14 0 1 32 21 4 70 40 27 4 1 0 22 336 87 48 6 0 47 0 1 6 2 23 16 2 30 23 0 1 4 1 0 3 1 0 29 chain 5821 chr17 81195210 + 64263860 64263949 5S 121 + 0 90 186925 24 11 12 54 chain 96126 chr17 81195210 + 64265056 64266110 SVA_F 1814 + 600 1814 37787 85 1 1 202 1 113 88 0 49 666 1 0 10 chain 5669 chr17 81195210 + 64266207 64266339 L1MB3 1562 - 93 189 188395 30 2 0 6 39 6 6 1 0 48 chain 23247 chr17 81195210 + 64290251 64290531 AluSg7 307 - 22 302 114458 158 1 0 18 0 1 103 chain 5616 chr17 81195210 + 64378848 64379002 MER20 218 + 50 190 188918 17 9 10 7 2 0 56 48 35 15 chain 3342 chr17 81195210 + 64441232 64441269 tRNA-Cys-TGY 72 - 35 72 218203 37 chain 26897 chr17 81195210 + 64453632 64453999 THE1C 375 + 0 375 96638 63 6 11 68 0 4 38 1 0 129 0 1 34 2 1 26 chain 23145 chr17 81195210 + 64469787 64470074 AluSp 311 + 17 298 114913 236 7 1 44 chain 16435 chr17 81195210 + 64480048 64480417 THE1B 368 - 0 368 137106 46 24 22 19 7 3 35 82 86 37 2 0 7 4 7 106 chain 16979 chr17 81195210 + 64506089 64506291 MER107 203 - 0 202 135645 202 chain 24225 chr17 81195210 + 64513130 64513413 AluSc 308 + 9 292 109060 283 chain 566085 chr17 81195210 + 64592697 64598713 L1HS 6032 - 0 6032 145 5284 0 16 732 chain 2964 chr17 81195210 + 64607054 64607089 LTR10B1 532 - 453 488 225834 35 chain 3602 chr17 81195210 + 64607135 64607271 MER21C 908 - 765 902 213621 36 83 84 17 chain 15831 chr17 81195210 + 64654087 64654316 THE1C 375 - 0 224 138851 47 0 1 129 20 13 4 0 1 29 chain 15863 chr17 81195210 + 64747920 64748182 MSTA 426 - 140 419 138764 29 0 6 15 11 15 62 22 28 27 5 6 91 chain 4023 chr17 81195210 + 64749950 64750053 MLT1B 390 + 248 357 207040 12 30 31 19 8 13 34 chain 3131 chr17 81195210 + 64751962 64751997 tRNA-Gly-GGG 71 + 0 35 222352 35 chain 6761 chr17 81195210 + 64763295 64763463 MER6B 211 + 0 181 179238 66 73 86 29 chain 4781 chr17 81195210 + 64772337 64772392 MER50 708 - 26 81 197563 55 chain 13155 chr17 81195210 + 64787125 64787270 L1PA4 6152 - 8 153 147625 145 chain 4046 chr17 81195210 + 64818867 64818957 MER20 218 - 89 194 206694 34 34 49 22 chain 63174 chr17 81195210 + 64821721 64822423 L1PA3long 6157 - 1 703 51371 4 1 0 333 0 1 364 chain 3689 chr17 81195210 + 64828765 64828805 MIRb 242 - 135 175 212096 40 chain 36373 chr17 81195210 + 64841094 64841576 L1PA8 5853 + 5377 5853 74395 143 0 1 43 2 1 44 2 0 69 13 10 51 3 2 9 0 1 9 1 0 93 chain 14820 chr17 81195210 + 64856862 64857068 MER30 238 + 0 221 141886 96 17 29 71 0 3 22 chain 14521 chr17 81195210 + 64918987 64919169 MER34B 572 - 39 221 142824 182 chain 79331 chr17 81195210 + 64919175 64920115 L1PA7 6471 - 10 954 43893 261 0 4 62 1 2 511 2 1 103 chain 24345 chr17 81195210 + 64952697 64953037 AluYb8 318 - 5 314 108397 8 3 0 169 10 0 24 0 2 10 33 15 22 2 0 59 chain 21771 chr17 81195210 + 65025465 65025743 AluSx1 309 + 0 276 121128 63 0 2 68 14 10 133 chain 21932 chr17 81195210 + 65033725 65034106 THE1D 372 - 1 353 120491 31 1 0 146 18 20 70 1 6 20 18 21 17 38 0 21 chain 61371 chr17 81195210 + 65060785 65061841 MER4E 760 + 0 752 52165 15 0 1 64 0 1 57 0 2 30 1 0 177 307 0 405 chain 24327 chr17 81195210 + 65061878 65062162 AluSc 308 - 24 308 108507 284 chain 23912 chr17 81195210 + 65100268 65100569 AluY 311 + 0 297 110853 118 3 0 15 1 0 164 chain 23633 chr17 81195210 + 65130222 65130514 AluSp 311 + 5 295 112400 126 2 0 164 chain 17476 chr17 81195210 + 65193164 65193522 THE1B 368 + 0 368 134313 109 93 86 6 0 1 12 25 39 51 0 2 62 chain 24631 chr17 81195210 + 65202714 65203003 AluSp 311 - 12 300 106823 116 1 0 172 chain 23014 chr17 81195210 + 65277534 65277819 AluSp 311 + 10 293 115559 30 3 1 252 chain 18743 chr17 81195210 + 65282741 65282983 AluSg7 307 - 58 296 130840 56 3 0 61 1 0 121 chain 27428 chr17 81195210 + 65287456 65287774 AluYf4 310 - 0 310 94882 57 2 0 3 7 0 179 0 1 70 chain 109268 chr17 81195210 + 65290693 65292254 LTR12C 1709 + 0 1709 34381 24 9 18 25 0 1 210 17 18 42 0 43 83 50 46 140 0 119 68 1 0 272 15 12 94 20 13 43 15 6 68 0 2 113 8 6 153 17 16 74 chain 6416 chr17 81195210 + 65296699 65296819 L1PB1 5432 + 5308 5420 181894 19 3 1 4 1 0 14 2 0 24 1 0 21 4 3 10 1 0 16 chain 18386 chr17 81195210 + 65300525 65300760 AluY 311 + 17 253 131826 113 1 2 121 chain 24308 chr17 81195210 + 65310984 65311271 AluY 311 + 11 297 108611 271 1 0 15 chain 14290 chr17 81195210 + 65320878 65321029 L1HS 6032 + 5881 6032 143589 151 chain 76992 chr17 81195210 + 65322961 65323887 LTR5_Hs 974 - 0 974 44971 100 3 1 43 0 6 710 10 51 13 0 3 47 chain 29764 chr17 81195210 + 65324453 65324900 LTR7B 505 + 0 490 85592 105 0 10 69 6 68 28 29 0 38 0 1 46 1 0 23 0 1 52 14 13 36 chain 2004 chr17 81195210 + 65326284 65326567 THE1B 368 + 0 294 125285 15 2 0 22 0 5 34 11 20 74 17 16 108 chain 115759 chr17 81195210 + 65326955 65328502 THE1B-int 1605 + 0 1593 32541 70 0 1 15 41 5 141 0 11 157 0 8 22 0 25 76 0 2 37 20 49 62 0 1 460 0 4 186 1 2 259 chain 8946 chr17 81195210 + 65329009 65329120 THE1B 368 + 183 294 165892 111 chain 510 chr17 81195210 + 65329121 65329193 THE1B 368 + 294 366 125285 72 chain 32620 chr17 81195210 + 65330113 65330572 PABL_A 660 + 0 442 79817 235 23 1 42 2 1 107 0 3 27 6 9 17 chain 25912 chr17 81195210 + 65352427 65352702 AluY 311 + 35 311 100362 97 0 1 178 chain 7883 chr17 81195210 + 65358080 65358168 MER85 139 + 8 96 171783 88 chain 22523 chr17 81195210 + 65371601 65371881 AluSq2 311 + 0 287 117922 53 1 6 73 0 2 153 chain 2508 chr17 81195210 + 65381490 65381538 LTR12 884 + 209 274 233033 20 9 26 19 chain 25134 chr17 81195210 + 65393107 65393396 AluSq10 312 - 23 312 104102 289 chain 87674 chr17 81195210 + 65394275 65395821 HSMAR1 1287 - 5 1262 40501 84 0 12 95 3 0 29 7 6 126 11 14 149 2 0 7 0 4 36 1 0 299 323 9 26 20 23 78 2 1 119 0 6 34 13 18 82 chain 10319 chr17 81195210 + 65405058 65405184 L1MB5 1630 - 1072 1198 159034 126 chain 30163 chr17 81195210 + 65405184 65405499 AluYb8 318 - 3 318 84301 315 chain 25241 chr17 81195210 + 65412930 65413229 AluSp 311 - 14 311 103525 217 3 1 79 chain 18104 chr17 81195210 + 65413255 65413524 AluJr4 308 - 13 287 132589 15 17 16 82 0 4 47 6 8 15 0 1 10 1 0 76 chain 23426 chr17 81195210 + 65420930 65421284 LTR7B 505 + 0 441 113496 27 1 12 69 0 10 57 0 38 19 1 0 5 19 13 13 0 33 69 1 0 23 0 1 15 0 2 35 chain 5195 chr17 81195210 + 65422011 65422104 MER58B 340 - 77 169 193092 48 20 19 25 chain 50631 chr17 81195210 + 65422237 65422834 L1PA8A 6298 + 5693 6291 58557 510 1 2 86 chain 4563 chr17 81195210 + 65450586 65450639 MER58B 340 - 217 271 200078 44 0 1 9 chain 25642 chr17 81195210 + 65458814 65459116 AluSp 311 - 8 310 101533 302 chain 62268 chr17 81195210 + 65466673 65467338 SVA_F 1814 + 1151 1814 51770 26 1 0 10 1 0 627 chain 5831 chr17 81195210 + 65467609 65467689 MADE1 96 + 0 96 186857 42 1 17 37 chain 14325 chr17 81195210 + 65468346 65468877 MER30 238 - 0 237 143477 74 16 14 44 313 3 69 0 18 15 chain 8715 chr17 81195210 + 65472989 65473097 MER5A1 166 + 14 122 167117 108 chain 23136 chr17 81195210 + 65490329 65490613 AluSg7 307 - 22 307 114961 158 0 1 126 chain 40668 chr17 81195210 + 65504264 65504800 MER41A 554 - 0 554 68340 72 10 15 31 0 1 112 4 5 147 1 0 10 0 12 149 chain 30427 chr17 81195210 + 65520866 65521184 AluYb8 318 - 0 318 83624 318 chain 22263 chr17 81195210 + 65594065 65594313 AluSc5 308 + 8 256 119060 248 chain 29093 chr17 81195210 + 65627463 65627774 AluYk12 309 + 0 309 88584 286 2 0 23 chain 4851 chr17 81195210 + 65659320 65659384 MER66B 489 - 26 90 196778 4 1 0 15 0 1 44 chain 2634 chr17 81195210 + 65699336 65699416 L1MD2 1676 - 22 101 231212 14 38 37 28 chain 9155 chr17 81195210 + 65710284 65710416 AluSc5 308 + 8 131 164788 26 10 2 72 2 1 22 chain 22760 chr17 81195210 + 65723515 65723785 AluSp 311 + 20 294 116781 49 0 3 11 0 1 210 chain 24891 chr17 81195210 + 65727368 65727631 AluYd8 298 - 0 263 105404 263 chain 24551 chr17 81195210 + 65757683 65757963 AluY 311 + 11 287 107241 115 4 0 161 chain 28947 chr17 81195210 + 65767374 65767705 L1PA6 6164 - 5 340 89236 28 0 1 67 1 4 235 chain 4793 chr17 81195210 + 65780765 65780823 MER83B 357 - 29 87 197439 58 chain 6929 chr17 81195210 + 65788731 65788817 HSMAR2 1300 + 1119 1205 177974 86 chain 24169 chr17 81195210 + 65789866 65790154 AluY 311 + 8 295 109378 119 1 0 168 chain 24644 chr17 81195210 + 65800081 65800376 AluY 311 + 6 304 106754 125 0 2 55 0 1 115 chain 10826 chr17 81195210 + 65816017 65816146 AluSp 311 + 171 300 156885 129 chain 23956 chr17 81195210 + 65824643 65824934 AluSp 311 - 11 302 110586 291 chain 9369 chr17 81195210 + 65825484 65825597 L1PA8A 6298 - 7 120 163717 113 chain 24366 chr17 81195210 + 65840856 65841158 AluSp 311 - 14 311 108283 7 5 0 290 chain 47939 chr17 81195210 + 65846970 65847566 LTR66 600 - 0 600 60532 105 1 17 66 2 0 238 18 8 166 chain 4391 chr17 81195210 + 65859807 65859861 MLT1C 463 - 349 406 202065 7 0 3 47 chain 5130 chr17 81195210 + 65860821 65860903 Tigger4a 237 - 1 101 193787 41 9 27 32 chain 28752 chr17 81195210 + 65866878 65867186 AluYa5 310 - 4 310 90109 213 2 0 93 chain 15803 chr17 81195210 + 65901963 65902163 L1PA5 6144 + 5930 6132 138946 68 4 5 119 0 1 9 chain 23114 chr17 81195210 + 65912441 65912713 AluSq2 311 + 13 291 115075 10 0 5 105 0 1 157 chain 5520 chr17 81195210 + 65954466 65954534 MER41B 635 + 172 250 189847 23 0 10 45 chain 22766 chr17 81195210 + 65973698 65973970 AluSc8 310 + 21 295 116749 112 0 2 160 chain 24570 chr17 81195210 + 65982380 65982674 AluSx 319 + 2 298 107142 166 0 1 112 0 1 16 chain 23061 chr17 81195210 + 65998716 65999012 AluSp 311 - 12 311 115345 137 10 13 149 chain 23923 chr17 81195210 + 66002354 66002870 L1PB1 5432 - 17 448 110794 11 1 0 13 1 0 21 9 8 16 2 0 14 15 12 23 14 1 16 1 0 44 1 0 15 2 1 42 1 0 11 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 66 11 111 0 3 5 chain 30782 chr17 81195210 + 66009835 66010280 MLT2A1 477 - 14 477 82900 21 3 0 6 33 52 150 0 3 26 0 1 22 0 1 11 4 1 169 chain 5033 chr17 81195210 + 66016021 66016083 tRNA-Arg-AGG 67 - 3 65 194802 62 chain 19079 chr17 81195210 + 66023769 66023997 AluY 311 + 40 258 129881 86 10 0 132 chain 22112 chr17 81195210 + 66035920 66036215 AluSp 311 + 14 303 119735 114 8 0 131 8 10 34 chain 97206 chr17 81195210 + 66047808 66049184 LTR12C 1709 + 2 1697 37512 264 0 1 169 0 1 355 1 319 8 2 0 105 0 4 200 1 0 66 133 0 20 1 132 51 chain 99280 chr17 81195210 + 66076587 66078280 LTR12C 1709 + 0 1709 36955 76 1 0 204 3 0 6 5 10 42 5 48 46 1 0 32 18 17 222 41 0 134 1 0 112 4 0 122 0 47 97 44 13 64 96 95 21 7 116 16 1 0 24 110 9 38 16 14 84 chain 2831 chr17 81195210 + 66077248 66077289 LTR12C 1709 + 822 862 85104 15 1 0 25 chain 115165 chr17 81195210 + 66095241 66096756 LTR12C 1709 + 0 1709 32727 260 0 1 175 0 1 85 0 1 153 0 41 39 0 2 79 1 0 83 0 119 71 1 0 7 3 1 106 0 4 67 49 79 216 8 7 112 chain 120334 chr17 81195210 + 66111757 66113137 SVA_B 1603 - 0 1597 30929 588 0 82 226 0 80 27 0 41 5 2 1 357 1 0 154 4 20 16 chain 29152 chr17 81195210 + 66160744 66161127 MER75 514 + 45 429 88307 10 3 4 4 1 0 30 0 1 335 chain 3538 chr17 81195210 + 66161459 66161501 MER75B 242 + 147 189 214750 42 chain 5418 chr17 81195210 + 66161561 66161623 MER75B 242 + 153 215 190819 62 chain 112567 chr17 81195210 + 66164619 66166062 LTR12C 1709 - 0 1709 33511 209 0 103 80 18 17 72 0 4 113 1 0 115 0 159 400 18 19 156 1 2 260 chain 3398 chr17 81195210 + 66167114 66167153 MER20B 722 + 577 616 217110 39 chain 12160 chr17 81195210 + 66176460 66176599 LTR12C 1709 + 928 1067 151572 139 chain 7818 chr17 81195210 + 66176599 66176715 LTR12C 1709 + 707 986 163379 53 10 173 53 chain 12019 chr17 81195210 + 66186700 66186894 THE1B 368 + 55 248 152124 60 15 17 40 3 2 24 3 1 49 chain 7235 chr17 81195210 + 66189455 66189556 L1MA5 2750 - 139 239 175859 49 1 0 51 chain 98642 chr17 81195210 + 66203815 66205169 LTR12C 1709 + 0 1708 37116 168 2 1 72 24 25 72 0 43 83 6 7 177 0 278 12 1 0 134 1 48 104 11 4 15 5 4 13 0 2 253 9 3 23 1 0 86 1 0 81 chain 3432 chr17 81195210 + 66254228 66254267 U3 216 - 177 216 216533 39 chain 55603 chr17 81195210 + 66278017 66278647 L1PA5 6144 + 5509 6144 55357 382 2 1 140 1 0 94 0 7 11 chain 109244 chr17 81195210 + 66304357 66305612 LTR12C 1709 - 0 1709 34386 481 0 4 31 0 444 245 1 4 410 0 3 87 chain 38181 chr17 81195210 + 66321183 66321680 MER1A 529 + 0 506 71866 25 1 6 49 8 12 414 chain 12237 chr17 81195210 + 66325853 66326018 MER30 238 - 0 188 151268 108 4 0 7 2 29 44 chain 81024 chr17 81195210 + 66327822 66328933 MER11B 1079 - 14 1079 43181 147 1 2 21 0 19 103 6 8 398 0 2 31 1 18 91 1 6 136 92 0 83 chain 5559 chr17 81195210 + 66328758 66328841 MER11B 1079 - 905 988 165376 83 chain 18599 chr17 81195210 + 66368484 66368850 MSTA 426 - 18 426 131230 91 4 24 44 24 22 48 76 100 79 chain 2925 chr17 81195210 + 66371758 66371790 MER3 215 + 174 206 226581 32 chain 5432 chr17 81195210 + 66383128 66383208 MADE1 96 + 0 96 190680 44 3 19 33 chain 12933 chr17 81195210 + 66390301 66390459 MER44C 733 + 481 639 148491 158 chain 56986 chr17 81195210 + 66399851 66400488 L1PA5 6144 - 0 637 54535 637 chain 67348 chr17 81195210 + 66402066 66404138 L1PB1 5432 - 23 2081 11280 5 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 16 8 0 7 5 4 4 1 0 15 1 0 16 10 7 21 1 0 16 2 1 50 30 23 9 1 0 24 1 0 9 1 2 197 0 7 192 0 2 22 0 4 53 1 2 93 0 4 542 12 24 236 0 5 229 20 0 20 0 3 117 chain 548449 chr17 81195210 + 66404267 66410281 L1PA3long 6157 - 0 6157 1645 849 0 4 2910 0 4 1486 4 132 58 0 7 554 0 1 99 1 0 53 chain 96277 chr17 81195210 + 66410283 66413245 L1PB1 5432 - 2081 5097 11280 70 0 2 113 18 5 228 4 8 80 18 9 140 5 7 189 0 1 52 7 13 163 0 3 113 6 7 320 0 1 109 0 4 50 0 1 128 0 2 25 2 1 110 9 0 155 31 45 82 0 12 13 1 0 43 21 61 536 2 1 47 1 0 29 14 10 28 chain 5405 chr17 81195210 + 66413565 66413833 L1MCa 1829 - 1593 1742 190936 25 69 15 12 2 0 4 1 0 25 67 18 16 12 0 20 2 1 13 chain 20050 chr17 81195210 + 66432864 66433147 AluSz 310 + 1 295 126977 40 0 8 82 29 32 132 chain 10671 chr17 81195210 + 66488829 66488950 MER50 708 - 24 146 157523 114 0 1 7 chain 17858 chr17 81195210 + 66496326 66496652 THE1B 368 + 0 333 133218 68 0 1 42 22 24 42 40 36 11 8 16 30 0 1 29 2 0 7 0 1 25 chain 22019 chr17 81195210 + 66500000 66500279 L1MA3 4352 + 3548 3827 120142 279 chain 3359 chr17 81195210 + 66502204 66502246 MER58B 340 + 203 245 217888 42 chain 26818 chr17 81195210 + 66513474 66513847 THE1C 375 - 2 375 96917 24 1 0 12 0 1 104 6 7 38 2 3 79 2 0 105 chain 107999 chr17 81195210 + 66513855 66515342 THE1C-int 1605 - 8 1586 34716 184 5 20 12 1 0 36 0 1 4 23 22 311 4 0 227 0 8 13 6 0 43 29 30 211 0 8 15 0 7 110 0 6 30 1 4 81 0 3 5 3 0 29 0 54 104 chain 10449 chr17 81195210 + 66544681 66544808 Tigger1 2417 - 2236 2364 158497 27 0 1 100 chain 29941 chr17 81195210 + 66548807 66549121 AluYb8 318 - 4 318 84996 314 chain 31002 chr17 81195210 + 66587719 66588152 MER61B 427 + 0 427 82508 114 32 26 17 2 1 33 0 1 235 chain 72610 chr17 81195210 + 66600132 66601092 LTR5_Hs 974 - 0 974 47210 103 23 21 16 8 15 163 1 0 188 6 7 171 0 1 161 5 13 115 chain 22167 chr17 81195210 + 66616414 66616706 THE1C 375 + 0 315 119512 80 5 6 56 0 4 49 0 18 102 chain 14886 chr17 81195210 + 66629844 66630118 THE1B 368 + 0 289 141666 107 14 16 46 58 71 49 chain 46662 chr17 81195210 + 66634865 66635418 MER41A 554 + 0 553 61487 553 chain 5970 chr17 81195210 + 66646125 66646249 MLT1B 390 + 282 390 185509 30 28 11 43 5 6 18 chain 62734 chr17 81195210 + 66649680 66650369 L1PA3long 6157 - 2137 2828 51529 402 0 2 287 chain 197418 chr17 81195210 + 66650369 66652523 L1PA3long 6157 + 4002 6156 19396 1328 0 1 821 1 0 4 chain 22098 chr17 81195210 + 66670609 66671028 MER61D 487 - 0 485 119797 11 1 0 70 2 1 74 2 0 33 88 80 9 0 60 17 6 2 40 0 22 66 chain 25020 chr17 81195210 + 66676959 66677259 AluYk4 311 + 0 296 104684 132 14 10 154 chain 19190 chr17 81195210 + 66699866 66700160 THE1B 368 - 69 368 129559 55 45 50 25 1 0 94 0 1 74 chain 27119 chr17 81195210 + 66722874 66723225 L1PREC2 3366 + 1988 2322 95873 47 20 3 284 chain 4234 chr17 81195210 + 66732751 66732801 L1MDa 1598 + 1122 1172 204111 50 chain 11552 chr17 81195210 + 66749058 66749583 L1PA16 3655 - 77 292 154095 46 311 0 45 48 49 75 chain 20684 chr17 81195210 + 66751562 66751907 THE1B 368 - 0 368 125024 84 15 13 26 37 47 30 1 0 76 0 1 36 0 15 40 chain 87258 chr17 81195210 + 66766469 66767457 L1PA5 6144 - 0 988 40667 988 chain 23520 chr17 81195210 + 66767764 66768011 AluYg6 310 + 43 290 113019 247 chain 39236 chr17 81195210 + 66769425 66769923 L1PA8 5853 + 5364 5853 70404 29 0 1 170 1 0 44 2 0 74 1 0 23 4 0 35 2 1 19 1 0 93 chain 55302 chr17 81195210 + 66785371 66786246 L1MA1 4479 - 337 1189 55517 35 2 0 19 16 14 122 3 0 5 1 0 38 0 3 60 2 0 20 1 0 18 5 6 47 1 0 15 4 2 23 1 0 130 12 9 29 1 0 4 0 1 29 0 1 64 16 14 45 3 0 73 5 0 26 chain 41587 chr17 81195210 + 66791594 66792120 LTR7B 505 - 0 505 67174 217 34 0 31 10 1 7 0 22 227 chain 40269 chr17 81195210 + 66793755 66794238 LTR7B 505 - 10 505 68917 165 1 0 73 17 30 227 chain 15971 chr17 81195210 + 66807650 66807985 MSTA 426 + 42 411 138450 56 10 31 5 0 3 53 70 73 33 19 26 89 chain 8609 chr17 81195210 + 66809883 66810362 L1MA8 2339 - 0 426 167675 36 270 219 75 59 61 16 4 0 19 chain 39005 chr17 81195210 + 66824678 66825337 L1MA1 4479 - 289 925 70737 18 8 0 13 4 2 6 1 0 9 1 0 35 2 0 29 6 7 4 1 0 103 0 1 11 3 0 93 1 0 19 24 21 63 2 1 9 10 8 24 1 0 23 14 16 104 1 0 17 chain 18252 chr17 81195210 + 66836819 66837184 THE1B 368 - 0 368 132198 125 12 20 9 0 1 20 25 18 52 57 0 8 7 65 50 chain 254652 chr17 81195210 + 66840041 66843196 L1PA8 5853 + 2692 5853 16004 214 1 2 399 11 16 1225 0 1 343 0 3 111 0 1 65 0 1 447 0 1 39 16 15 33 2 0 62 28 26 42 4 3 19 3 2 91 chain 4223 chr17 81195210 + 66852988 66853039 Tigger1 2417 + 369 420 204263 51 chain 23527 chr17 81195210 + 66856676 66856970 AluSp 311 + 0 311 112973 29 0 1 102 3 0 60 1 20 99 chain 97654 chr17 81195210 + 66860674 66861757 L1PA3long 6157 - 8 1095 37384 841 0 4 242 chain 7194 chr17 81195210 + 66867577 66867713 L1MB1 2102 - 522 661 176110 60 44 47 32 chain 7971 chr17 81195210 + 66868067 66868165 Tigger3b 1229 + 291 393 171215 43 0 4 55 chain 50245 chr17 81195210 + 66868174 66868728 L1PA2 6032 + 5471 6029 58830 345 0 3 41 0 1 168 chain 2998 chr17 81195210 + 66876354 66876390 MER52A 1651 + 957 993 225077 36 chain 2606 chr17 81195210 + 66886037 66886067 L1ME1 1623 - 146 176 231596 30 chain 20314 chr17 81195210 + 66889877 66890096 L1PA2 6032 - 1 220 126192 219 chain 14600 chr17 81195210 + 66900267 66900430 AluY 311 + 127 290 142587 163 chain 5799 chr17 81195210 + 66912518 66912650 L1MA3 4352 + 4207 4332 187153 28 4 0 25 2 0 5 21 23 29 2 0 11 1 0 4 chain 58777 chr17 81195210 + 66916837 66917491 L1PA4 6152 + 5487 6141 53538 654 chain 4901 chr17 81195210 + 66940015 66940074 L1PA8 5853 + 5415 5474 196261 59 chain 27632 chr17 81195210 + 66940075 66940457 L1PA8 5853 + 5474 5849 94257 90 1 0 45 2 0 69 25 23 39 2 1 19 1 0 89 chain 112198 chr17 81195210 + 66943882 66945311 L1PA8 5853 - 0 1425 33611 21 0 1 41 2 1 29 1 0 19 2 1 43 11 10 8 1 0 69 2 0 46 1 0 168 1 0 100 0 1 208 0 1 74 1 3 581 chain 73800 chr17 81195210 + 66945318 66946281 L1P1 4361 + 3364 4328 46616 192 0 1 236 1 2 353 1 0 12 0 1 86 1 0 4 0 1 53 1 0 23 chain 16496 chr17 81195210 + 66950184 66950369 L1PA3long 6157 - 5 190 136939 185 chain 28632 chr17 81195210 + 66960949 66961257 AluYa5 310 - 2 310 90596 308 chain 42656 chr17 81195210 + 66963323 66964035 L1PB1 5432 - 130 809 65834 6 4 0 15 1 0 40 5 4 15 9 8 46 2 0 9 5 1 12 1 0 8 1 0 24 1 0 4 30 7 88 0 2 5 3 1 169 46 52 163 chain 41438 chr17 81195210 + 66971002 66971485 L1PA7 6471 - 7 490 67364 483 chain 70096 chr17 81195210 + 66974085 66974893 L1P2 5180 - 2499 3310 48282 98 0 3 261 1 0 227 4 5 217 chain 192741 chr17 81195210 + 66974893 66977065 L1PA4 6152 + 3954 6152 19793 402 0 4 1457 0 1 63 6 26 238 0 1 6 chain 20140 chr17 81195210 + 66993955 66994405 L1MC1 2226 - 42 472 126709 32 4 3 14 1 0 7 9 0 6 1 0 18 57 57 54 2 0 15 3 0 64 33 27 33 17 20 80 chain 429808 chr17 81195210 + 66995284 67000000 L1PA3long 6157 - 15 4744 9311 841 0 1 797 0 4 150 0 3 99 0 1 253 0 3 819 1 0 486 0 2 1270 chain 112091 chr17 81195210 + 67000000 67001289 L1HS 6032 - 4747 6032 33639 431 1 0 137 0 7 438 9 0 15 1 0 257 chain 13312 chr17 81195210 + 67009156 67009359 L1MA2 4263 - 149 342 147041 10 1 0 46 7 0 91 2 1 9 2 1 35 chain 342593 chr17 81195210 + 67032559 67036858 L1PA8 5853 + 1579 5850 11817 312 20 6 121 19 0 62 1 0 802 2 0 302 0 1 570 5 6 295 4 8 447 0 8 249 14 15 224 6 5 45 1 0 389 0 1 56 0 1 60 2 1 43 2 0 70 37 35 27 2 1 19 2 1 89 chain 27483 chr17 81195210 + 67061879 67062240 THE1C 375 + 7 365 94708 16 4 3 164 1 0 159 1 0 16 chain 288308 chr17 81195210 + 67066439 67069915 L1P3 4156 + 3 3479 14138 224 0 1 23 1 0 68 2 1 80 2 0 7 1 4 48 0 1 1886 7 5 135 1 0 66 2 4 29 3 0 47 1 3 347 6 5 306 0 2 184 chain 3626 chr17 81195210 + 67070877 67070917 L1PA16 3655 - 2647 2687 213229 40 chain 28731 chr17 81195210 + 67087661 67087962 AluYa5 310 - 9 310 90201 301 chain 4068 chr17 81195210 + 67091648 67091728 MADE1 96 - 1 96 206352 29 20 35 31 chain 25909 chr17 81195210 + 67107516 67107882 THE1C 375 + 2 375 100383 101 5 7 25 0 4 45 19 18 145 0 2 26 chain 70029 chr17 81195210 + 67109916 67110705 L1PA4 6152 + 5352 6143 48381 372 1 2 84 1 0 316 0 2 15 chain 20697 chr17 81195210 + 67119072 67119299 L1PA4 6152 + 5909 6136 124977 227 chain 13150 chr17 81195210 + 67134456 67134603 L1PA3long 6157 - 1647 1794 147649 147 chain 150151 chr17 81195210 + 67134603 67136248 L1PA3long 6157 + 4512 6157 24594 1645 chain 5132 chr17 81195210 + 67171897 67171972 MER44B 551 - 22 98 193761 39 2 3 34 chain 9414 chr17 81195210 + 67180570 67180682 L1PBa 3878 + 220 330 163489 17 2 0 93 chain 16040 chr17 81195210 + 67181091 67181420 L1PB1 5432 + 5115 5414 138247 23 1 0 8 1 0 10 7 3 9 3 1 24 1 0 27 2 1 15 1 0 45 1 0 21 16 6 18 10 7 13 2 0 24 1 0 22 1 0 12 1 0 10 chain 125178 chr17 81195210 + 67191700 67193146 SVA_B 1603 - 0 1556 29328 550 0 37 40 1 0 13 0 80 19 1 0 12 1 0 216 2 0 440 1 0 57 4 3 89 chain 30427 chr17 81195210 + 67206311 67206629 AluYb8 318 - 0 318 83623 318 chain 129451 chr17 81195210 + 67206629 67209127 L1PB1 5432 - 48 3995 28213 14 1 0 24 2 0 14 9 6 15 24 15 12 11 15 33 18 16 26 1 0 22 6 4 9 2 0 3 2 0 12 1 0 8 1 0 20 39 0 11 47 10 54 470 1987 8 1 0 204 23 18 198 0 5 7 6 1 24 0 3 86 0 2 398 4 14 123 1 10 138 1 0 110 0 1 22 0 1 30 0 11 203 chain 2425 chr17 81195210 + 67207374 67207414 L1PB1 5432 - 276 313 233996 10 1 0 8 1 0 4 1 0 15 chain 4851 chr17 81195210 + 67232901 67233048 MER20 218 + 41 198 196772 29 11 20 28 52 53 27 chain 9129 chr17 81195210 + 67262615 67262713 L1PA2 6032 + 5926 6024 164914 98 chain 29151 chr17 81195210 + 67272573 67272945 L1PA7 6471 + 6088 6463 88309 219 15 17 36 5 6 97 chain 206181 chr17 81195210 + 67274893 67277183 L1PA3long 6157 + 3861 6157 18776 493 0 4 1625 8 10 164 chain 64516 chr17 81195210 + 67294709 67295979 L1PB1 5432 + 4190 5422 50794 19 1 0 176 0 19 59 0 4 51 3 5 34 13 12 27 9 13 18 3 0 39 10 13 24 0 2 220 14 15 69 34 30 25 135 95 9 2 0 51 1 0 17 1 0 45 1 0 4 109 92 14 1 0 13 1 0 18 chain 34343 chr17 81195210 + 67296077 67296547 MER1A 529 - 1 485 77135 57 25 28 351 5 16 32 chain 37019 chr17 81195210 + 67338466 67338989 MER41A 554 - 0 553 73494 125 0 23 231 0 1 55 45 52 41 1 0 25 chain 3777 chr17 81195210 + 67344403 67344446 MER4D1 891 - 848 891 210714 43 chain 24267 chr17 81195210 + 67362845 67363149 AluSp 311 - 14 311 108864 16 8 1 280 chain 49236 chr17 81195210 + 67366000 67367489 MER4E1 777 - 8 756 59564 157 0 4 19 332 0 20 21 26 97 10 16 71 7 26 108 447 0 137 0 5 7 6 5 50 chain 13923 chr17 81195210 + 67388401 67388686 L1PB1 5432 - 10 269 144846 4 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 9 6 14 20 10 6 2 0 16 2 1 43 1 0 17 2 1 50 2 0 5 chain 26627 chr17 81195210 + 67445771 67446053 AluYf4 310 - 28 310 97568 282 chain 15164 chr17 81195210 + 67464810 67464996 MER107 203 + 0 181 140873 155 5 0 26 chain 14925 chr17 81195210 + 67550195 67550547 THE1B 368 - 1 368 141559 114 142 148 60 5 14 31 chain 41843 chr17 81195210 + 67555420 67555885 L1PA5 6144 - 1 467 66838 170 0 1 295 chain 21913 chr17 81195210 + 67595610 67595976 THE1D 372 + 0 372 120576 56 9 0 50 0 1 81 9 6 7 2 0 9 14 16 12 5 17 23 0 2 5 1 0 3 1 0 12 0 5 67 chain 17394 chr17 81195210 + 67600171 67600371 L1PA5 6144 + 5944 6144 134528 200 chain 558865 chr17 81195210 + 67608084 67614238 L1PA3long 6157 - 0 6157 422 1740 0 5 457 1 0 300 4 0 392 0 1 2817 6 8 437 chain 20185 chr17 81195210 + 67616245 67616491 AluSc 308 + 57 301 126577 236 2 0 8 chain 5779 chr17 81195210 + 67618039 67618133 L1MA4A 3247 - 683 770 187364 32 1 0 42 8 2 11 chain 35429 chr17 81195210 + 67627318 67627762 MLT2A1 477 + 0 477 75644 14 0 2 152 5 2 213 0 34 60 chain 87717 chr17 81195210 + 67628190 67629192 L1PA5 6144 - 906 1902 40479 235 7 1 760 chain 82708 chr17 81195210 + 67629193 67630116 L1PA5 6144 + 5222 6144 42453 669 1 0 253 chain 12437 chr17 81195210 + 67638297 67638452 L1PA7 6471 + 6312 6467 150505 155 chain 15193 chr17 81195210 + 67640152 67640343 MER107 203 + 18 203 140795 152 7 1 32 chain 18768 chr17 81195210 + 67643690 67644067 THE1D 372 + 15 370 130778 26 0 2 11 9 0 46 2 3 85 8 6 12 37 39 29 26 11 32 1 2 20 2 0 31 chain 6474 chr17 81195210 + 67655541 67655656 Tigger2 2703 + 2358 2486 181441 8 3 0 32 20 36 52 chain 85757 chr17 81195210 + 67677779 67678730 L1PA3long 6157 + 5202 6157 41244 108 0 4 509 0 1 259 1 0 74 chain 21380 chr17 81195210 + 67690944 67691182 L1PA4 6152 + 5905 6143 122585 238 chain 26772 chr17 81195210 + 67691515 67691830 AluY 311 + 0 311 97074 11 3 0 122 1 0 178 chain 129086 chr17 81195210 + 67693780 67695353 THE1A-int 1579 - 0 1579 28295 396 1 7 45 0 1 142 4 0 331 0 1 4 1 0 177 0 4 15 1 3 77 3 0 376 chain 25651 chr17 81195210 + 67695354 67695707 THE1A 353 - 1 353 101491 134 4 1 8 0 3 96 6 5 105 chain 18493 chr17 81195210 + 67696264 67696629 THE1B 368 + 0 368 131522 74 1 0 10 0 1 23 26 27 34 3 0 8 39 37 10 11 19 63 8 7 55 chain 4377 chr17 81195210 + 67710501 67710720 MER30 238 - 6 238 202226 42 129 0 15 18 160 15 chain 357725 chr17 81195210 + 67731695 67736523 L1PB1 5432 - 8 4823 11410 4 1 0 16 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 17 15 12 1 0 44 1 0 16 2 1 53 2 0 9 4 0 11 1 0 9 1 0 24 1 0 5 7 6 106 1 2 60 1 2 225 0 2 27 0 1 57 11 8 60 0 3 96 13 11 200 5 7 90 0 1 413 7 0 419 0 2 5 3 14 85 11 14 264 9 10 63 3 4 10 1 0 6 5 0 94 0 2 189 1 5 289 1 4 339 1 0 55 0 1 98 1 0 4 0 1 43 2 0 6 5 7 176 1 2 120 15 0 6 1 0 144 1 0 265 9 16 361 chain 181206 chr17 81195210 + 67736549 67738533 L1PA3long 6157 - 5 1989 20880 334 1 0 491 1 2 1157 chain 40645 chr17 81195210 + 67746950 67747423 L1PA7 6471 + 5971 6445 68377 167 0 1 306 chain 21399 chr17 81195210 + 67747841 67748135 THE1B 368 - 69 368 122516 72 15 21 34 1 0 172 chain 23069 chr17 81195210 + 67788104 67788375 AluSp 311 + 21 293 115301 214 0 1 57 chain 3879 chr17 81195210 + 67795675 67795721 MLT1B 390 + 54 100 209178 46 chain 29541 chr17 81195210 + 67804371 67804681 AluYa5 310 - 0 310 86470 310 chain 38060 chr17 81195210 + 67813774 67814189 L1PA3long 6157 + 5737 6152 72047 415 chain 31556 chr17 81195210 + 67833873 67834342 L1MA8 2339 + 650 1076 81551 61 39 0 91 5 0 150 6 7 117 chain 21118 chr17 81195210 + 67836130 67836405 AluY 311 + 38 311 123492 90 1 2 95 9 6 80 chain 21606 chr17 81195210 + 67843766 67844245 L1PB1 5432 + 4984 5427 121751 26 7 6 83 9 8 7 1 0 24 27 21 8 2 0 50 21 19 44 1 0 16 1 0 4 19 8 19 2 0 5 1 0 7 0 3 5 6 1 16 7 6 21 1 0 13 1 0 18 2 0 5 chain 3801 chr17 81195210 + 67849132 67849177 Tigger3c 601 + 320 365 210385 45 chain 56436 chr17 81195210 + 67857949 67859020 MER4E1 777 + 3 769 54888 212 1 6 106 9 32 54 317 10 10 0 1 37 0 1 64 4 0 4 17 0 6 7 0 223 chain 42181 chr17 81195210 + 67859028 67859534 MLT2A2 560 - 51 558 66422 304 0 1 202 chain 27037 chr17 81195210 + 67862480 67862909 MER4A1 472 + 0 472 96156 21 0 1 11 1 0 4 0 17 87 5 6 73 56 82 30 1 0 140 chain 24869 chr17 81195210 + 67865412 67865758 L1PA8 5853 + 5506 5853 105522 17 0 8 33 1 0 44 2 0 74 21 19 42 1 0 17 1 0 93 chain 43549 chr17 81195210 + 67868493 67869031 MER41A 554 - 12 554 64742 163 0 7 36 3 0 336 chain 153497 chr17 81195210 + 67919313 67921016 L1PA3long 6157 - 0 1697 24159 138 7 0 673 7 8 878 chain 87094 chr17 81195210 + 67921016 67921970 L1PA3long 6157 + 3515 4470 40658 670 0 1 284 chain 16253 chr17 81195210 + 67932507 67932789 THE1B 368 + 0 283 137605 13 6 7 84 9 0 65 1 0 29 36 46 39 chain 21440 chr17 81195210 + 67952544 67952878 THE1B 368 + 0 332 122369 169 1 0 29 45 55 47 11 0 32 chain 4257 chr17 81195210 + 67976833 67976881 MER20 218 - 142 190 203781 48 chain 50688 chr17 81195210 + 67983384 67984057 THE1B-int 1605 + 924 1600 58509 39 0 1 50 1 0 4 0 5 277 23 20 11 5 6 263 chain 25301 chr17 81195210 + 68019993 68020293 AluYk4 311 - 5 304 103224 96 2 1 202 chain 24526 chr17 81195210 + 68054611 68054905 AluY 311 + 3 297 107399 129 0 1 73 2 1 90 chain 16131 chr17 81195210 + 68114352 68114563 L1PA7 6471 + 6199 6470 137963 9 0 63 187 2 0 8 1 0 4 chain 28358 chr17 81195210 + 68150247 68150547 AluY 311 + 7 308 91735 125 0 1 175 chain 32357 chr17 81195210 + 68159268 68159619 L1PA2 6032 - 0 351 80263 351 chain 21299 chr17 81195210 + 68159632 68159863 L1PA2 6032 + 5448 5679 122867 231 chain 8363 chr17 81195210 + 68232036 68232136 MLT2A1 477 + 10 112 169062 23 0 2 77 chain 87650 chr17 81195210 + 68233290 68234436 L1PA8 5853 - 0 1147 40513 93 1 0 19 3 2 44 0 1 6 2 1 8 3 0 7 0 2 11 2 0 47 5 4 44 1 0 79 7 8 226 0 1 236 0 6 302 chain 42994 chr17 81195210 + 68278097 68278590 MER9a3 513 + 0 513 65423 269 0 18 128 0 2 96 chain 46645 chr17 81195210 + 68308144 68308689 L1PA6 6164 - 2 549 61497 266 0 2 279 chain 3147 chr17 81195210 + 68310663 68310701 MLT1E2 623 - 22 60 222035 38 chain 48071 chr17 81195210 + 68327159 68327720 L1PA7 6471 + 5909 6469 60428 549 1 0 11 chain 16211 chr17 81195210 + 68344861 68345064 MER107 203 + 0 203 137715 203 chain 25107 chr17 81195210 + 68385421 68386076 THE1A 353 + 0 342 104246 111 1 0 93 333 21 117 chain 21116 chr17 81195210 + 68395751 68396063 THE1C-int 1605 + 1252 1585 123511 31 20 38 133 7 8 114 0 2 7 chain 23212 chr17 81195210 + 68407948 68408260 L1PA8 5853 - 0 305 114633 93 2 1 18 2 1 52 1 0 6 1 0 74 3 1 45 1 0 14 chain 46705 chr17 81195210 + 68408973 68409524 L1PA7 6471 - 6 557 61452 551 chain 93780 chr17 81195210 + 68432153 68433248 L1PA7 6471 - 12 1103 38413 320 0 2 5 5 0 500 2 0 3 2 0 5 0 3 253 chain 21234 chr17 81195210 + 68444949 68445277 THE1B 368 - 0 359 123081 27 1 5 93 35 45 29 1 0 69 0 3 38 0 15 35 chain 26713 chr17 81195210 + 68454582 68454948 THE1B 368 - 0 368 97282 39 0 1 35 11 10 110 2 1 127 0 5 27 2 0 13 chain 568686 chr17 81195210 + 68455097 68461128 L1HS 6032 + 0 6032 7 74 0 1 5957 chain 5279 chr17 81195210 + 68479775 68479875 MER52D 1964 - 757 845 192219 47 9 11 17 14 0 13 chain 19703 chr17 81195210 + 68510689 68510986 AluY 311 + 5 289 128082 128 35 22 46 1 0 80 0 1 7 chain 22626 chr17 81195210 + 68521369 68521675 AluSp 311 + 10 307 117447 115 2 0 7 4 0 64 6 3 108 chain 42367 chr17 81195210 + 68538152 68538706 MER41A 554 + 0 554 66194 92 0 1 11 5 6 381 3 0 20 0 1 42 chain 563200 chr17 81195210 + 68540952 68546936 L1HS 6032 - 0 5984 264 5984 chain 26186 chr17 81195210 + 68562435 68562723 L1PA4 6152 - 1 289 99256 288 chain 28315 chr17 81195210 + 68572697 68573050 THE1A 353 + 0 353 91885 47 0 1 48 1 0 257 chain 25069 chr17 81195210 + 68615429 68615736 AluY 311 + 0 300 104463 52 7 2 14 1 0 65 1 0 167 chain 27766 chr17 81195210 + 68624653 68624945 AluYd8 298 - 6 298 93817 292 chain 16110 chr17 81195210 + 68690592 68690922 L1PREC2 3366 - 416 718 138024 5 1 0 23 24 17 17 32 42 8 21 0 33 1 0 52 3 1 35 6 0 69 chain 10587 chr17 81195210 + 68695378 68695515 L1PA8 5853 + 5717 5853 157885 23 2 1 112 chain 43938 chr17 81195210 + 68699788 68700440 LTR12_ 688 + 0 688 64278 333 22 24 14 5 12 36 0 1 28 12 6 45 18 17 32 0 33 107 chain 67686 chr17 81195210 + 68707122 68707880 L1PA4 6152 - 0 766 49370 21 0 6 76 0 3 567 1 0 93 chain 42018 chr17 81195210 + 68714594 68715124 MLT2A2 560 + 11 554 66598 164 1 0 184 0 1 42 0 11 76 1 2 7 0 1 55 chain 31124 chr17 81195210 + 68717152 68717655 L1MA2 4263 - 158 629 82297 47 15 8 84 1 0 8 1 0 32 1 6 42 0 1 14 21 0 57 7 4 114 4 0 26 1 0 28 chain 17197 chr17 81195210 + 68717694 68717919 THE1C 375 + 0 228 135045 124 3 0 5 2 8 91 chain 30012 chr17 81195210 + 68720087 68720489 LTR7 482 - 0 482 84764 158 0 10 22 0 31 36 0 1 109 23 61 54 chain 31758 chr17 81195210 + 68726483 68726896 L1PA8 5853 - 0 406 81234 93 1 0 19 2 1 52 1 0 9 6 5 66 2 0 46 1 0 115 chain 45511 chr17 81195210 + 68795819 68796338 L1PA6 6164 + 5637 6156 62488 519 chain 31565 chr17 81195210 + 68814154 68815431 MLT2A1 477 - 0 477 81536 33 838 45 14 4 0 213 7 4 168 chain 343846 chr17 81195210 + 68815431 68819646 HERVL-int 5654 - 0 5654 11785 250 12 29 150 7 0 48 2 3 115 0 1 268 0 8 9 0 6 140 1 2 33 0 1 300 0 8 407 0 1 15 2 1 15 0 1 249 0 1 295 3 13 37 1 1391 120 1 0 5 1 2 612 1 0 690 7 9 419 chain 34598 chr17 81195210 + 68819646 68820131 MLT2A1 477 - 0 477 76760 46 18 0 42 0 6 178 0 1 14 2 1 9 0 1 9 5 2 107 0 6 55 chain 223950 chr17 81195210 + 68822414 68824991 L1PA4 6152 - 0 2495 17657 6 4 0 774 1 0 537 77 4 1148 4 0 26 chain 74729 chr17 81195210 + 68841182 68842035 L1P2 5180 - 2437 3292 46148 183 0 1 163 0 1 507 chain 18619 chr17 81195210 + 68844405 68844705 THE1B 368 - 62 368 131162 66 0 8 18 41 39 6 1 0 52 5 6 111 chain 8104 chr17 81195210 + 68908798 68908894 MER30B 195 + 99 195 170470 96 chain 4101 chr17 81195210 + 68909465 68909513 MER53 195 - 135 183 205926 48 chain 372373 chr17 81195210 + 68944607 68949826 L1PB1 5432 + 19 5428 11015 27 88 60 23 0 2 147 1 0 103 0 332 232 5 3 68 0 1 378 1 0 7 7 0 11 14 5 127 0 4 47 0 6 45 8 9 409 7 8 422 9 1 130 0 1 192 1 0 6 0 1 8 2 0 55 23 20 824 32 10 320 5 0 43 0 12 328 3 0 81 0 2 26 32 0 72 3 0 177 0 2 9 11 0 193 0 1 5 37 39 50 17 11 24 2 0 9 16 11 11 3 1 50 2 1 16 1 0 39 5 4 16 1 0 4 63 47 23 1 0 21 1 0 13 1 0 16 1 0 4 1 0 4 chain 25580 chr17 81195210 + 68966810 68967107 AluY 311 + 14 311 101823 297 chain 113304 chr17 81195210 + 68979676 68981232 THE1B-int 1605 - 6 1588 33280 113 0 1 84 1 0 119 0 1 489 52 52 63 23 26 126 4 1 64 19 44 399 chain 3028 chr17 81195210 + 68986259 68986318 L1PB3 3668 - 113 169 224425 21 10 8 22 1 0 5 chain 27458 chr17 81195210 + 68988835 68989206 THE1C 375 + 0 374 94788 142 6 10 31 11 11 156 1 0 24 chain 23983 chr17 81195210 + 69007279 69007583 AluSp 311 + 8 300 110427 280 12 0 12 chain 38976 chr17 81195210 + 69017019 69017477 LTR2 463 - 0 463 70773 241 1 6 216 chain 43779 chr17 81195210 + 69027419 69027966 L1PA8 5853 + 5312 5853 64478 252 1 0 44 2 0 70 2 1 9 1 0 18 0 1 33 2 1 19 1 0 93 chain 23070 chr17 81195210 + 69054507 69054819 AluSc8 310 + 10 305 115298 42 0 6 76 24 1 170 chain 8724 chr17 81195210 + 69076603 69076707 LTR9 672 + 0 105 167065 37 0 1 67 chain 140373 chr17 81195210 + 69090000 69091704 L1PA7 6471 + 4771 6466 26089 54 5 0 272 22 0 523 2 1 90 6 7 198 0 6 303 0 12 27 0 1 16 1 0 185 chain 18319 chr17 81195210 + 69099396 69099613 L1PA7 6471 + 6246 6458 132025 126 5 0 86 chain 34038 chr17 81195210 + 69124098 69124473 L1PA4 6152 + 5768 6144 77564 233 0 1 142 chain 111035 chr17 81195210 + 69127252 69128562 L1P3 4156 - 2816 4124 33920 11 1 0 17 0 1 991 2 1 68 1 0 219 chain 23960 chr17 81195210 + 69134505 69135054 L1PB1 5432 - 8 465 110568 4 1 0 16 1 0 13 1 0 14 0 8 7 9 0 7 33 28 19 18 8 4 1 0 15 1 0 44 1 0 18 14 0 52 2 0 9 16 11 10 1 0 23 1 0 8 50 3 136 chain 15538 chr17 81195210 + 69139760 69139965 MER30 238 + 38 238 139776 71 5 0 129 chain 20332 chr17 81195210 + 69155285 69155615 THE1D 372 + 0 364 126134 139 0 1 21 40 42 13 0 1 8 15 21 79 0 24 15 chain 24710 chr17 81195210 + 69165705 69165996 AluY 311 + 8 298 106382 264 1 0 26 chain 9220 chr17 81195210 + 69169416 69169544 L1PB2 3958 - 214 341 164448 62 2 1 64 chain 16404 chr17 81195210 + 69193599 69193800 L1PREC2 3366 + 1804 2005 137196 201 chain 5196 chr17 81195210 + 69200600 69200673 MER96B 391 - 216 289 193078 28 0 1 14 1 0 30 chain 64158 chr17 81195210 + 69201904 69202604 L1PA3long 6157 + 5457 6157 50937 700 chain 34373 chr17 81195210 + 69204900 69205323 L1PA7 6471 - 5 414 77100 8 3 0 377 11 0 24 chain 27649 chr17 81195210 + 69227405 69227774 THE1C 375 + 1 375 94211 182 1 0 11 7 10 20 0 3 51 0 1 71 1 0 25 chain 7550 chr17 81195210 + 69241462 69241552 L1PA8 5853 - 0 90 173871 90 chain 24379 chr17 81195210 + 69243301 69243580 L1PA6 6164 - 2 281 108202 279 chain 42169 chr17 81195210 + 69268132 69268643 L1PA7 6471 - 3 512 66439 7 4 0 90 0 1 233 1 2 176 chain 58135 chr17 81195210 + 69274604 69275311 L1PA7 6471 - 4 707 53909 82 0 1 252 1 2 277 14 8 81 chain 36868 chr17 81195210 + 69284501 69284901 L1PA2 6032 - 4 404 73699 400 chain 17006 chr17 81195210 + 69284901 69285082 L1PA2 6032 + 5458 5639 135575 181 chain 7035 chr17 81195210 + 69302688 69302768 L1PBa 3878 + 1083 1163 177213 80 chain 167285 chr17 81195210 + 69302797 69307276 L1PB1 5432 + 1524 5422 22358 18 3 7 191 16 17 58 0 1 204 1 0 474 10 0 6 2 1 80 1 10 4 1 0 14 8 5 6 0 5 195 321 14 110 1 0 63 8 0 143 1 14 47 3 0 87 3 14 44 2 0 65 0 1 65 1 0 52 0 3 174 1678 1402 20 1 0 6 1 0 13 6 2 9 2 0 50 2 3 15 0 1 44 1 0 15 3 0 13 0 3 15 2 0 5 15 12 22 29 27 11 1 0 18 chain 20077 chr17 81195210 + 69306660 69306899 L1PA6 6164 + 5923 6162 126893 239 chain 533266 chr17 81195210 + 69348103 69354035 L1PA3long 6157 - 0 6153 3811 138 0 7 57 1 0 577 1 0 698 0 8 37 1 0 277 0 4 1183 1 0 440 0 1 328 0 1 1361 2 0 136 0 128 293 1 87 242 0 1 21 9 0 128 chain 8935 chr17 81195210 + 69433679 69433780 L1PA6 6164 - 2 103 165946 101 chain 29723 chr17 81195210 + 69446950 69447362 L1PA8 5853 + 5445 5853 85750 76 0 3 40 1 0 45 3 1 69 1 0 12 1 0 48 6 5 10 8 7 92 chain 21902 chr17 81195210 + 69475441 69475736 L1PA8 5853 + 5564 5853 120609 44 2 0 70 2 1 9 1 0 51 3 2 21 1 0 91 chain 39941 chr17 81195210 + 69509731 69510219 L1PA7 6471 - 5 494 69407 7 2 0 168 4 7 307 chain 28013 chr17 81195210 + 69516286 69516627 L1PA6 6164 + 5824 6162 92956 330 3 0 8 chain 3516 chr17 81195210 + 69540335 69540383 MER20 218 - 145 190 215126 40 3 0 5 chain 15277 chr17 81195210 + 69548876 69549227 THE1D 372 - 20 372 140550 118 0 6 28 97 99 22 36 27 37 0 2 13 chain 8592 chr17 81195210 + 69568751 69568848 L1PA3long 6157 + 6060 6157 167780 97 chain 9527 chr17 81195210 + 69589956 69590075 L1PA7 6471 - 3 119 162943 11 3 0 105 chain 21630 chr17 81195210 + 69614935 69615179 L1PA3long 6157 + 5909 6153 121659 244 chain 58644 chr17 81195210 + 69615212 69615943 THE1B-int 1605 + 870 1605 53609 138 0 1 49 0 2 525 3 4 16 chain 20186 chr17 81195210 + 69615951 69616298 THE1B 368 + 8 348 126573 36 7 8 42 1 0 17 13 14 44 35 28 96 1 0 55 chain 35610 chr17 81195210 + 69651278 69651684 L1PA3long 6157 - 0 411 75402 55 0 4 161 0 1 190 chain 3464 chr17 81195210 + 69673928 69673980 MER3 215 + 168 215 215908 6 5 0 41 chain 36420 chr17 81195210 + 69680654 69681885 L1PB1 5432 - 5 650 74341 5 2 0 18 1 0 6 12 11 17 1 0 24 17 14 5 2 0 19 25 13 15 1 0 44 1 0 15 2 1 52 35 30 24 3 0 6 578 26 276 2 1 23 chain 48584 chr17 81195210 + 69697219 69697762 L1PA2 6032 + 5489 6031 60047 295 0 1 234 2 0 12 chain 16802 chr17 81195210 + 69699366 69699576 AluY 311 + 71 283 136109 50 5 7 155 chain 48701 chr17 81195210 + 69702218 69702811 L1PA5 6144 - 2 585 59957 14 8 5 128 14 6 177 0 1 252 chain 10354 chr17 81195210 + 69724436 69724565 L1PA16 3655 - 79 208 158887 129 chain 20510 chr17 81195210 + 69769952 69770257 THE1B 368 + 0 307 125596 169 1 0 6 24 25 10 0 4 16 1 0 11 1 0 66 chain 13447 chr17 81195210 + 69782870 69783070 MER107 203 + 0 202 146537 38 0 6 68 12 11 48 3 0 31 chain 24584 chr17 81195210 + 69822597 69822978 THE1D 372 - 0 372 107066 31 6 5 102 0 6 34 4 7 84 1 3 24 34 15 61 chain 4236 chr17 81195210 + 69828375 69828432 MER20 218 + 3 62 204084 11 1 3 45 chain 39530 chr17 81195210 + 69853030 69853488 L1PA5 6144 + 5686 6144 69984 458 chain 42466 chr17 81195210 + 69870590 69871230 L1MA2 4263 + 3499 4114 66054 75 2 0 10 9 5 73 1 0 4 2 1 142 3 0 145 23 21 83 7 0 17 5 1 28 1 0 10 chain 20290 chr17 81195210 + 69876556 69876911 THE1B 368 - 0 368 126253 128 1 0 8 1 0 18 9 16 29 1 0 34 26 28 21 32 39 47 chain 23593 chr17 81195210 + 69900491 69900853 THE1B 368 - 0 368 112616 56 1 2 4 1 0 64 1 0 12 1 0 10 14 19 31 2 1 27 7 11 131 chain 56733 chr17 81195210 + 69912100 69912852 MER4E1 777 + 19 770 54699 328 6 5 186 30 29 47 0 1 155 chain 21542 chr17 81195210 + 69920683 69920968 AluY 311 + 8 296 121994 118 17 18 131 5 7 14 chain 31175 chr17 81195210 + 69924151 69924542 MLT2A1 477 + 0 385 82210 169 4 1 12 2 0 23 1 0 180 chain 122059 chr17 81195210 + 69940403 69941976 THE1B-int 1605 + 0 1605 30366 108 0 1 4 0 3 245 7 6 59 0 25 169 0 1 389 9 13 359 2 0 84 0 1 4 1 0 128 0 1 5 chain 28195 chr17 81195210 + 69945965 69946317 MER4A1 472 + 96 447 92328 109 1 0 242 chain 23499 chr17 81195210 + 69956632 69956982 THE1B 368 - 15 368 113132 109 19 16 14 0 1 4 1 0 4 17 24 12 1 0 169 chain 3421 chr17 81195210 + 69957022 69957062 MER58D 378 + 323 363 216756 40 chain 8135 chr17 81195210 + 69963980 69964180 THE1B 368 + 92 306 170309 19 0 3 5 11 16 40 63 69 62 chain 22095 chr17 81195210 + 69967680 69968057 THE1B 368 + 0 368 119813 17 2 0 30 0 1 14 1 0 49 5 6 52 39 32 72 21 20 75 chain 5670 chr17 81195210 + 69977745 69977837 MER58A 224 - 17 103 188392 5 2 0 65 7 3 13 chain 5560 chr17 81195210 + 69993171 69993241 L1MA3 4352 + 3976 4046 189474 70 chain 40195 chr17 81195210 + 70010491 70010967 L1PA6 6164 + 5685 6160 69034 462 1 0 13 chain 9301 chr17 81195210 + 70031864 70031984 MER85 139 - 0 139 164056 28 2 21 90 chain 4731 chr17 81195210 + 70032201 70032265 MER58B 340 - 24 87 198162 24 1 0 39 chain 24117 chr17 81195210 + 70032580 70032884 THE1B 368 - 12 313 109651 159 2 0 29 1 0 113 chain 23298 chr17 81195210 + 70045618 70045901 AluSx4 309 + 20 309 114217 55 1 7 227 chain 32352 chr17 81195210 + 70048124 70048508 L1PA6 6164 + 5778 6162 80270 384 chain 10045 chr17 81195210 + 70062862 70062979 MSTA 426 - 309 426 160344 117 chain 58943 chr17 81195210 + 70074527 70075193 L1PA5 6144 + 5473 6140 53432 337 0 1 329 chain 28634 chr17 81195210 + 70087447 70087804 THE1B 368 - 0 368 90584 75 1 0 95 2 0 32 1 0 107 0 15 44 chain 39957 chr17 81195210 + 70144789 70145654 MER41A 554 - 9 554 69384 147 337 14 124 0 3 6 3 0 62 0 1 92 16 18 78 chain 21866 chr17 81195210 + 70157773 70158042 AluY 311 + 29 299 120766 89 1 0 162 0 2 17 chain 26084 chr17 81195210 + 70174805 70175114 AluSp 311 - 0 311 99690 46 0 2 263 chain 70691 chr17 81195210 + 70198013 70198829 L1PA5 6144 - 1 820 48069 10 1 3 483 0 1 322 chain 3338 chr17 81195210 + 70222811 70222846 U1 164 - 129 164 218256 35 chain 3385 chr17 81195210 + 70226910 70227078 MER58A 224 + 45 210 217375 28 92 93 14 10 6 24 chain 19614 chr17 81195210 + 70250615 70250990 MSTA 426 + 0 420 128353 108 20 48 50 4 0 6 8 0 7 20 30 50 33 52 69 chain 51068 chr17 81195210 + 70252222 70252826 L1PA7 6471 - 2 605 58274 332 1 0 271 chain 24599 chr17 81195210 + 70272045 70272396 THE1B 368 + 4 368 107002 9 2 0 24 3 8 36 15 19 28 0 8 32 2 0 200 chain 4771 chr17 81195210 + 70279430 70279490 MER53 195 - 128 188 197674 60 chain 6787 chr17 81195210 + 70281597 70281681 L1MC4 1079 + 50 133 179055 18 1 0 65 chain 3740 chr17 81195210 + 70290249 70290294 MADE1 96 + 50 96 211326 29 0 1 16 chain 26279 chr17 81195210 + 70327160 70327461 AluYk4 311 + 0 301 98907 301 chain 38492 chr17 81195210 + 70352916 70353426 MLT2A2 560 + 0 548 71449 180 1 0 128 6 38 16 4 0 40 0 11 135 chain 37912 chr17 81195210 + 70366406 70366867 L1PA8 5853 + 5398 5853 72267 166 1 0 45 2 0 70 1 0 61 2 1 19 1 0 93 chain 17189 chr17 81195210 + 70369646 70370003 THE1D 372 + 0 372 135064 51 124 136 6 3 0 45 1 7 127 chain 25638 chr17 81195210 + 70394655 70394950 AluY 311 + 5 301 101543 121 0 1 174 chain 8833 chr17 81195210 + 70402637 70402757 MER21A 919 + 25 177 166478 56 0 23 19 0 10 23 1 0 21 chain 3641 chr17 81195210 + 70404819 70404864 MLT1D 503 + 415 460 212955 45 chain 27255 chr17 81195210 + 70435662 70436014 THE1A 353 + 0 353 95421 119 6 7 227 chain 29264 chr17 81195210 + 70446412 70446809 L1PA8 5853 - 4 393 87722 86 7 6 16 2 1 53 2 0 8 2 1 70 5 3 41 1 0 104 chain 25885 chr17 81195210 + 70449971 70450323 L1PA8 5853 - 0 346 100501 93 1 0 19 2 1 52 2 1 8 2 1 68 7 5 41 1 0 21 0 1 35 chain 4379 chr17 81195210 + 70459505 70459556 MER1A 529 + 472 523 202203 51 chain 47451 chr17 81195210 + 70469100 70470428 L1PB1 5432 + 4703 5420 60866 397 583 5 9 5 0 24 1 0 9 1 0 9 8 5 6 2 0 53 2 1 15 1 0 44 1 0 15 25 13 19 2 0 5 1 0 14 2 0 7 6 8 9 1 0 21 1 0 13 1 0 16 chain 25298 chr17 81195210 + 70496098 70496384 AluY 311 + 3 289 103235 286 chain 4422 chr17 81195210 + 70503150 70503201 MER121 330 - 159 210 201679 51 chain 25930 chr17 81195210 + 70505218 70505545 AluSp 311 - 2 311 100299 15 2 0 12 16 0 282 chain 4749 chr17 81195210 + 70524952 70525052 MIR 256 - 66 169 197921 14 35 38 51 chain 79653 chr17 81195210 + 70540035 70540916 L1PA3long 6157 - 989 1870 43712 881 chain 93580 chr17 81195210 + 70540916 70541933 L1PA3long 6157 + 5139 6156 38483 1017 chain 21002 chr17 81195210 + 70543938 70544296 THE1B 368 - 0 368 123906 126 57 65 42 25 27 108 chain 13120 chr17 81195210 + 70547355 70547525 AluYf4 310 - 18 166 147769 8 22 0 140 chain 80618 chr17 81195210 + 70547874 70548789 L1PA5 6144 - 2 913 43335 7 3 0 12 1 0 892 chain 8395 chr17 81195210 + 70568672 70568802 MER85 139 + 0 139 168880 93 1 11 12 7 6 17 chain 25915 chr17 81195210 + 70578404 70578768 THE1B 368 + 0 368 100353 169 6 5 27 8 13 92 1 0 4 1 2 56 chain 27317 chr17 81195210 + 70585983 70586284 AluYf4 310 + 0 301 95216 301 chain 20914 chr17 81195210 + 70591905 70592268 THE1B 368 - 0 368 124232 56 1 2 7 2 0 61 1 0 13 1 0 15 0 1 4 35 33 20 0 8 13 26 27 108 chain 53764 chr17 81195210 + 70634110 70634867 LTR17 781 + 0 755 56498 59 1 0 102 1 0 17 4 3 101 0 1 44 1 0 171 42 42 163 25 26 26 chain 43417 chr17 81195210 + 70635210 70635761 MER41A 554 - 0 554 64913 53 4 8 353 7 6 134 chain 21582 chr17 81195210 + 70660051 70660291 7SK 245 - 5 245 121836 240 chain 24360 chr17 81195210 + 70676466 70676829 THE1B 368 + 0 368 108320 169 1 0 15 22 30 10 7 6 9 2 1 128 chain 9159 chr17 81195210 + 70678511 70678627 Tigger2a 444 + 263 384 164773 17 0 5 99 chain 27216 chr17 81195210 + 70688499 70688853 THE1A 353 - 0 353 95541 243 11 10 100 chain 15313 chr17 81195210 + 70695308 70695535 MER30 238 - 0 238 140450 43 3 0 41 3 4 24 10 23 103 chain 6358 chr17 81195210 + 70737237 70737331 Tigger2b_Pri 1066 - 620 716 182327 65 7 9 22 chain 27990 chr17 81195210 + 70749944 70750582 L1PB1 5432 + 4909 5430 93032 72 0 3 18 32 21 80 3 0 9 78 3 23 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 15 1 0 44 1 0 22 16 6 19 2 0 5 1 0 14 7 5 7 0 1 6 2 1 4 1 0 21 1 0 13 9 8 10 2 0 8 chain 50420 chr17 81195210 + 70758221 70758854 MER41B 635 + 1 635 58698 92 1 0 32 1 2 428 0 1 79 chain 6270 chr17 81195210 + 70765481 70765554 L1MB3 1562 + 1230 1303 183000 73 chain 25661 chr17 81195210 + 70765977 70766317 MER4A1 472 + 129 472 101446 88 1 0 4 3 5 174 1 3 69 chain 19000 chr17 81195210 + 70769406 70769769 THE1B 368 + 0 368 130113 108 26 27 42 61 66 63 9 8 54 chain 4472 chr17 81195210 + 70778487 70778539 MLT1C 463 + 374 426 201095 52 chain 4130 chr17 81195210 + 70781301 70781345 MSTA 426 + 370 414 205492 44 chain 77432 chr17 81195210 + 70795238 70796257 MER11A 1151 + 0 1151 44762 55 0 99 76 2 1 63 4 0 146 5 6 92 0 1 145 3 6 120 0 26 26 16 21 37 0 1 56 10 11 163 chain 56069 chr17 81195210 + 70854266 70855208 L1PREC2 3366 - 325 1207 55079 31 6 4 35 37 20 29 4 2 14 52 39 13 3 0 4 1 0 43 9 8 47 8 6 40 0 1 59 1 0 39 2 0 240 6 0 4 11 0 204 chain 34352 chr17 81195210 + 70873965 70874346 L1PA4 6152 - 6 387 77125 381 chain 20329 chr17 81195210 + 70907330 70907555 L1PA4 6152 + 5916 6141 126143 225 chain 15957 chr17 81195210 + 70928440 70928628 L1PA7 6471 - 7 197 138494 142 0 1 13 0 1 33 chain 10135 chr17 81195210 + 70936990 70937128 MLT1B 390 + 34 173 159920 43 2 3 93 chain 34066 chr17 81195210 + 70939949 70940406 LTR45B 484 + 11 472 77518 71 4 11 69 1 2 147 1 2 82 5 0 77 chain 60083 chr17 81195210 + 70957336 70958034 L1PA6 6164 + 5460 6162 52784 32 0 1 12 0 1 79 0 1 32 0 1 543 chain 52259 chr17 81195210 + 70960794 70961400 L1PA5 6144 + 5537 6144 57457 430 0 4 64 1 0 97 3 1 11 chain 8732 chr17 81195210 + 70970650 70970870 Tigger3b 1229 + 621 850 167019 22 12 12 38 79 88 69 chain 24280 chr17 81195210 + 70988944 70989302 THE1B 368 - 0 367 108776 56 8 6 57 13 21 13 9 14 32 1 0 150 1 0 18 chain 11085 chr17 81195210 + 70989997 70990134 THE1B 368 + 2 138 155863 21 1 0 115 chain 19565 chr17 81195210 + 70997506 70997712 L1PA3long 6157 + 5951 6157 128477 206 chain 18591 chr17 81195210 + 71005881 71006092 L1PA5 6144 - 3 214 131254 211 chain 22664 chr17 81195210 + 71066746 71067097 THE1B 368 + 0 368 117247 138 0 4 27 1 0 29 8 6 10 23 35 48 4 8 63 chain 142920 chr17 81195210 + 71075625 71078244 L1PB1 5432 + 3304 5423 25661 218 4 5 198 10 9 49 0 13 9 1 0 400 0 2 266 0 2 19 342 0 14 8 13 107 3 0 134 7 8 137 8 6 190 1 2 10 224 63 42 19 19 12 0 12 18 1 0 11 36 20 14 9 6 14 2 0 24 1 0 23 4 3 8 1 0 14 2 0 5 chain 6842 chr17 81195210 + 71082497 71082587 L1MB3 1562 + 1191 1284 178645 7 0 3 83 chain 21078 chr17 81195210 + 71094070 71095526 LTR8 732 + 40 729 123625 100 0 5 11 7 6 53 12 8 43 1126 359 104 chain 125717 chr17 81195210 + 71097582 71099003 L1PA5 6144 - 13 1439 29182 320 0 1 512 1 5 588 chain 22026 chr17 81195210 + 71102449 71102715 AluSp 311 + 30 304 120115 139 0 1 104 0 7 23 chain 7104 chr17 81195210 + 71110064 71110157 MSTC 436 + 0 97 176730 16 0 4 77 chain 8199 chr17 81195210 + 71114486 71114604 MER20 218 - 58 173 169956 61 13 10 44 chain 5003 chr17 81195210 + 71127571 71127630 MER41B 635 - 94 154 195115 32 0 1 27 chain 20378 chr17 81195210 + 71146793 71147155 THE1B 368 - 0 368 125968 49 14 13 53 65 69 6 0 2 59 8 9 108 chain 30124 chr17 81195210 + 71172447 71172821 THE1C 375 + 0 375 84400 185 1 0 28 0 3 134 1 0 25 chain 5462 chr17 81195210 + 71192319 71192395 MSTA 426 + 5 82 190387 17 3 4 56 chain 23657 chr17 81195210 + 71262345 71262637 AluSp 311 - 6 300 112269 24 3 5 265 chain 5202 chr17 81195210 + 71286623 71286684 MER20 218 - 66 127 193004 61 chain 26728 chr17 81195210 + 71292839 71293143 AluYk4 311 + 0 305 97232 118 0 1 186 chain 5515 chr17 81195210 + 71311938 71312019 MADE1 96 + 0 95 189889 29 0 16 39 2 0 11 chain 23162 chr17 81195210 + 71373770 71374050 AluSp 311 - 14 311 114846 20 5 22 255 chain 3878 chr17 81195210 + 71380389 71380439 MIRc 230 - 112 162 209185 50 chain 4355 chr17 81195210 + 71402210 71402273 MER2 342 - 167 230 202494 43 2 1 14 0 1 4 chain 5121 chr17 81195210 + 71448822 71448924 MER117 194 - 48 151 193864 26 32 33 44 chain 24968 chr17 81195210 + 71468850 71469192 THE1B 368 + 20 366 104970 17 1 6 20 0 1 55 0 1 49 8 7 16 2 0 174 chain 24689 chr17 81195210 + 71500489 71500797 AluY 311 + 5 309 106501 118 9 5 181 chain 25419 chr17 81195210 + 71526302 71526676 THE1D 372 - 0 372 102597 32 1 0 116 17 18 12 14 16 21 4 0 157 chain 3097 chr17 81195210 + 71535852 71535887 MLT1C 463 + 88 123 222973 35 chain 25520 chr17 81195210 + 71623905 71624223 AluY 311 + 0 308 102139 51 3 2 80 2 0 169 7 0 6 chain 38977 chr17 81195210 + 71628284 71628833 MLT2A2 560 + 0 560 70772 244 12 11 154 0 11 40 27 28 72 chain 5315 chr17 81195210 + 71656419 71656484 MER5A 189 - 116 188 191867 20 0 7 45 chain 26524 chr17 81195210 + 71668613 71669034 L1PB2 3958 - 124 531 97957 57 4 3 20 3 1 70 2 1 64 1 0 24 7 5 31 6 5 102 4 0 12 2 0 12 chain 9969 chr17 81195210 + 71671079 71671232 L1MA4 2864 - 859 1013 160730 64 25 26 64 chain 10829 chr17 81195210 + 71698576 71699102 Tigger1 2417 - 2160 2364 156873 56 325 0 34 5 6 15 0 1 24 32 33 35 chain 3148 chr17 81195210 + 71707768 71707805 MER63B 433 - 54 91 221985 37 chain 3869 chr17 81195210 + 71710283 71710329 Charlie4z 170 + 95 141 209324 46 chain 356825 chr17 81195210 + 71803576 71807508 L1PA4 6152 + 2218 6151 11438 889 0 1 3043 chain 21948 chr17 81195210 + 71851003 71851272 AluSp 311 - 18 296 120432 213 0 9 56 chain 37899 chr17 81195210 + 71855458 71855962 MER41B 635 + 0 509 72287 73 10 15 4 1 0 35 1 2 380 chain 44793 chr17 81195210 + 71858199 71858814 MER41B 635 - 20 635 63303 12 1 0 19 14 13 17 0 5 37 0 1 382 0 1 36 1 0 4 7 4 10 1 0 74 chain 2929 chr17 81195210 + 71890835 71890866 MLT1L 557 - 1 32 226529 31 chain 3064 chr17 81195210 + 71902654 71902731 MLT1H 522 - 0 81 223680 24 19 20 15 1 4 18 chain 21374 chr17 81195210 + 71915197 71915529 THE1B 368 + 0 367 122607 44 5 20 54 6 17 37 1 0 28 0 2 97 1 0 7 15 24 37 chain 5542 chr17 81195210 + 71920532 71920601 MLT1B 390 + 24 93 189641 69 chain 25938 chr17 81195210 + 71927313 71927646 THE1C 375 + 3 335 100260 170 4 5 8 2 0 149 chain 3627 chr17 81195210 + 71927999 71928041 MER96 175 + 12 54 213204 42 chain 27908 chr17 81195210 + 71932343 71932651 AluYg6 310 + 0 301 93330 118 7 0 183 chain 45120 chr17 81195210 + 71970766 71972009 PABL_A 660 + 0 660 62913 10 0 1 73 5 14 149 24 68 42 1 0 79 636 0 224 chain 42959 chr17 81195210 + 71974181 71974731 MER41A 554 + 0 554 65462 104 0 1 80 5 4 216 0 4 67 1 0 30 0 1 47 chain 10081 chr17 81195210 + 71996728 71996876 MER21A 919 - 749 908 160176 42 2 0 60 8 21 36 chain 15200 chr17 81195210 + 71999221 71999454 THE1B 368 - 61 298 140776 65 1 0 12 7 6 10 0 1 6 11 17 21 1 0 99 chain 9969 chr17 81195210 + 72031394 72031514 LTR32 486 + 366 486 160733 120 chain 4989 chr17 81195210 + 72072773 72072945 HAL1-2a_MD 234 - 15 215 195264 20 27 0 8 18 0 12 13 59 9 3 0 18 5 38 17 3 0 19 chain 3617 chr17 81195210 + 72086606 72086646 LTR50 688 + 622 662 213392 40 chain 7814 chr17 81195210 + 72109159 72109361 LTR12C 1709 - 832 992 172225 21 78 0 19 1 0 25 8 45 50 chain 19067 chr17 81195210 + 72181550 72181769 AluY 311 + 58 277 129916 219 chain 16147 chr17 81195210 + 72242821 72243040 THE1B 368 - 0 215 137908 74 1 0 102 6 4 14 3 2 19 chain 2958 chr17 81195210 + 72261022 72261060 MER58D 378 + 187 224 225915 14 1 0 23 chain 35361 chr17 81195210 + 72263158 72263694 LTR12F 595 + 0 531 75716 103 1 2 40 2 0 20 12 20 25 14 5 103 1 0 75 12 10 42 0 1 4 15 14 67 chain 3896 chr17 81195210 + 72303861 72303925 MER53 195 + 75 142 208908 31 6 8 16 0 1 11 chain 4510 chr17 81195210 + 72342844 72342896 MER53 195 + 143 195 200671 52 chain 29413 chr17 81195210 + 72395687 72396068 THE1C 375 + 0 375 87009 20 2 0 100 3 0 60 0 1 4 1 0 164 1 0 26 chain 26172 chr17 81195210 + 72399100 72399397 AluY 311 + 1 298 99315 18 0 1 85 1 0 193 chain 7804 chr17 81195210 + 72413752 72413843 5S 121 - 30 121 172284 91 chain 25115 chr17 81195210 + 72415683 72415972 AluSp 311 + 8 296 104201 32 1 0 256 chain 27081 chr17 81195210 + 72418797 72419153 THE1B 368 - 0 368 95996 176 2 0 17 7 6 110 0 15 44 chain 24414 chr17 81195210 + 72483788 72484141 THE1B 368 - 0 368 108009 74 1 0 118 5 4 77 20 34 19 0 5 22 2 0 15 chain 126431 chr17 81195210 + 72484156 72485735 THE1B-int 1605 - 15 1605 28963 201 29 12 124 0 1 796 1 26 393 0 2 35 chain 26841 chr17 81195210 + 72485756 72486102 THE1B 368 - 21 368 96843 109 1 0 64 3 2 130 0 5 24 2 0 13 chain 23817 chr17 81195210 + 72497545 72497816 L1PA6 6164 - 2 274 111381 9 0 1 262 chain 3061 chr17 81195210 + 72498436 72498472 LTR18B 584 - 547 584 223802 6 0 1 30 chain 104281 chr17 81195210 + 72499408 72500746 HERVH-int 3825 + 2077 3825 35672 15 0 5 238 8 9 331 16 16 128 5 372 52 5 41 170 0 1 370 chain 27406 chr17 81195210 + 72502172 72502559 LTR7B 505 + 0 505 94946 108 0 10 53 18 86 51 4 45 84 18 17 51 chain 26506 chr17 81195210 + 72514749 72515111 THE1B 368 + 6 368 98021 7 2 0 24 1 6 71 0 1 5 2 1 48 1 0 23 2 0 176 chain 6741 chr17 81195210 + 72516019 72516130 L1MB1 2102 + 1892 1996 179379 12 5 0 33 7 5 54 chain 6465 chr17 81195210 + 72529965 72530089 HUERS-P3-int 2218 + 82 194 181520 27 1 0 20 5 2 8 1 0 4 3 0 21 1 0 19 4 1 10 chain 31786 chr17 81195210 + 72554637 72555073 LTR2 463 + 0 463 81194 130 0 4 28 8 29 140 0 1 19 23 24 88 chain 24024 chr17 81195210 + 72558570 72558854 AluY 311 + 9 288 110190 96 1 0 21 4 0 162 chain 6671 chr17 81195210 + 72562208 72562310 MER20 218 + 61 161 179897 19 13 11 70 chain 18680 chr17 81195210 + 72586150 72586513 THE1B 368 + 0 368 130998 107 15 17 45 70 74 63 16 15 47 chain 24557 chr17 81195210 + 72664305 72664784 MER4A1 472 + 0 472 107214 13 1 0 197 86 76 42 40 43 24 18 19 58 chain 10879 chr17 81195210 + 72687068 72687303 AluJo 314 - 20 165 156665 85 90 0 60 chain 3038 chr17 81195210 + 72714503 72714535 MLT1A0 366 + 318 350 224263 32 chain 28483 chr17 81195210 + 72720194 72720633 MER4A1 472 - 10 472 91252 59 1 3 108 1 0 40 1 0 13 0 1 29 10 25 84 3 0 7 0 1 38 1 0 4 1 9 11 1 0 7 5 8 15 chain 29832 chr17 81195210 + 72720647 72721069 LTR7B 505 - 10 505 85342 41 14 13 79 1 0 42 1 2 39 2 4 19 1 0 8 1 64 66 0 10 108 chain 29042 chr17 81195210 + 72783479 72783786 AluYb8 318 + 0 307 88794 307 chain 19957 chr17 81195210 + 72825263 72825505 AluSz6 309 - 10 252 127281 242 chain 123859 chr17 81195210 + 72902022 72903699 LTR12C 1709 - 6 1709 29745 78 1 0 84 1 0 258 1 2 47 50 19 59 0 47 53 10 10 169 0 40 113 31 0 253 5 7 464 chain 7564 chr17 81195210 + 72904862 72904946 LTR12C 1709 + 1625 1709 173774 84 chain 393141 chr17 81195210 + 72905026 72909644 HERV9-int 5642 + 0 4632 10349 522 0 8 70 5 6 189 1 0 312 9 8 590 0 1 331 1 0 687 7 0 306 1 0 979 0 4 363 1 9 130 10 14 88 1 0 15 chain 61209 chr17 81195210 + 72909644 72910539 LTR12C 1709 + 773 1700 52250 64 1 0 201 0 88 89 44 13 51 16 17 185 34 11 49 1 0 77 8 7 75 chain 3815 chr17 81195210 + 72930624 72930666 MIR3 191 - 77 119 210155 42 chain 22832 chr17 81195210 + 72976044 72976375 AluSg4 309 + 0 296 116435 58 7 0 50 1 2 65 28 0 105 1 0 16 chain 21667 chr17 81195210 + 72990921 72991180 AluSc 308 + 38 295 121509 185 2 0 72 chain 28324 chr17 81195210 + 73018670 73019008 LTR14A 344 + 0 344 91850 130 0 2 39 0 4 169 chain 129117 chr17 81195210 + 73019579 73021886 HERVK14-int 1672 + 5 1655 28287 25 1 0 11 1 0 48 1 0 91 0 1 125 1 0 8 0 5 15 2 0 232 1 0 24 0 1 22 1 0 206 1 0 66 1 0 97 1 0 79 7 5 6 2 0 33 1 0 13 0 2 192 1 0 104 1 0 62 2 1 20 4 11 94 654 0 51 chain 45404 chr17 81195210 + 73021182 73021835 LTR12_ 688 + 1 688 62589 63 0 1 12 5 71 15 40 0 90 0 1 81 5 7 115 0 1 20 7 11 24 1 0 175 chain 30265 chr17 81195210 + 73026271 73026615 LTR14A 344 + 0 344 84021 344 chain 6044 chr17 81195210 + 73030000 73030065 tRNA-Arg-AGG 67 + 0 65 184860 65 chain 6044 chr17 81195210 + 73030533 73030598 tRNA-Arg-AGG 67 - 2 67 184862 65 chain 6637 chr17 81195210 + 73031207 73031280 tRNA-Arg-CGG 73 + 0 73 180194 73 chain 16171 chr17 81195210 + 73037843 73038046 7SLRNA 320 + 9 232 137839 15 0 20 188 chain 29118 chr17 81195210 + 73040286 73040599 AluYb8 318 - 8 318 88465 5 3 0 305 chain 72339 chr17 81195210 + 73041118 73042148 MER11C 1089 - 26 1089 47321 25 0 1 9 8 20 88 1 0 56 0 1 125 0 1 38 1 5 4 1 0 91 37 36 156 0 2 20 1 0 68 23 27 28 3 15 247 chain 24714 chr17 81195210 + 73081111 73081401 AluSc 308 + 11 301 106359 290 chain 12650 chr17 81195210 + 73114237 73114430 LTR39 781 - 559 755 149641 24 21 20 26 1 0 66 1 3 41 0 3 13 chain 3956 chr17 81195210 + 73130342 73130420 MER21A 919 + 707 785 208051 32 7 8 14 6 5 19 chain 16106 chr17 81195210 + 73153963 73154806 MER41A 554 - 22 554 138037 28 23 25 6 0 5 32 572 253 88 7 8 87 chain 23823 chr17 81195210 + 73174339 73174630 AluSc 308 + 11 305 111343 246 1 0 14 0 4 30 chain 7499 chr17 81195210 + 73189748 73189839 AluSp 311 - 12 103 174163 91 chain 30103 chr17 81195210 + 73190695 73191008 AluYb8 318 + 0 313 84477 313 chain 14558 chr17 81195210 + 73192378 73192534 L1PA4 6152 + 5995 6151 142711 156 chain 9749 chr17 81195210 + 73218669 73219200 MER82 654 + 52 275 161850 72 34 31 24 350 45 51 chain 28447 chr17 81195210 + 73248701 73249132 LTR7B 505 + 0 503 91385 105 0 10 60 0 38 12 3 27 18 8 10 38 1 2 45 1 0 23 4 3 50 14 13 49 chain 292500 chr17 81195210 + 73249134 73252688 HERVH-int 3825 + 0 3825 13861 212 0 11 309 5 0 38 1 0 10 1 0 24 1 14 13 3 41 25 1 0 26 0 1 5 1 0 50 1 0 59 0 3 229 13 14 102 4 8 35 15 0 8 0 1 203 0 1 463 0 1 94 0 4 404 1 4 36 2 0 313 0 1 308 9 11 39 7 218 88 23 23 74 0 1 74 0 2 225 chain 29100 chr17 81195210 + 73253935 73254362 LTR7B 505 + 0 503 88548 10 0 2 93 0 10 60 0 38 12 3 27 18 8 10 38 1 2 45 1 0 23 0 1 52 14 13 49 chain 3504 chr17 81195210 + 73330660 73330704 MER44A 345 - 110 158 215303 7 0 4 37 chain 4502 chr17 81195210 + 73346174 73346278 FAM 185 + 10 126 200751 27 38 50 39 chain 11427 chr17 81195210 + 73351587 73351786 MER30 238 - 2 212 154578 4 1 0 28 25 23 60 2 14 28 4 6 47 chain 29577 chr17 81195210 + 73397244 73397554 AluYb8 318 + 0 310 86288 310 chain 23018 chr17 81195210 + 73436082 73436684 MER75 514 + 200 494 115542 67 0 1 148 309 0 78 chain 5786 chr17 81195210 + 73449951 73450019 MER30B 195 + 113 181 187320 68 chain 30223 chr17 81195210 + 73463595 73463912 AluYb8 318 - 1 318 84122 317 chain 29073 chr17 81195210 + 73474086 73474397 AluYa5 310 - 1 310 88667 183 2 0 126 chain 5875 chr17 81195210 + 73543549 73543619 MER34C2 569 - 0 70 186430 70 chain 57835 chr17 81195210 + 73576905 73577792 LTR12C 1709 + 492 1709 54070 17 19 35 106 0 278 181 16 9 28 15 14 57 18 11 32 0 2 36 12 23 10 3 0 8 0 2 169 0 4 67 12 44 43 0 3 38 chain 17684 chr17 81195210 + 73578815 73579027 AluY 311 + 84 297 133736 48 0 1 164 chain 26460 chr17 81195210 + 73581814 73582141 LTR14A 344 - 10 344 98208 126 6 5 32 1 9 162 chain 23348 chr17 81195210 + 73652154 73652449 AluSp 311 - 18 303 113930 7 6 0 110 2 0 51 2 0 117 chain 23940 chr17 81195210 + 73653858 73654150 AluSc 308 + 11 302 110686 245 1 0 46 chain 26897 chr17 81195210 + 73740194 73740500 AluSp 311 - 5 311 96635 306 chain 4647 chr17 81195210 + 73745626 73745683 MER53 195 + 138 195 199087 57 chain 31273 chr17 81195210 + 73763299 73763729 LTR7B 505 - 0 505 82034 51 14 13 35 0 2 42 1 0 42 1 2 38 0 2 26 6 68 69 0 10 105 chain 3484 chr17 81195210 + 73763991 73764028 L1MB8 1703 + 978 1015 215607 37 chain 8600 chr17 81195210 + 73795939 73796064 BC200 147 + 16 137 167730 24 0 1 81 2 0 8 3 0 7 chain 25949 chr17 81195210 + 73867334 73867621 AluYk4 311 - 24 311 100218 287 chain 18952 chr17 81195210 + 73882011 73882321 THE1B 368 + 0 309 130219 169 1 0 21 60 60 59 chain 26932 chr17 81195210 + 73899802 73900108 AluSp 311 - 8 311 96506 123 3 0 180 chain 3131 chr17 81195210 + 73941894 73941930 MER94B 130 - 8 44 222349 36 chain 22570 chr17 81195210 + 73943329 73943588 AluSp 311 - 13 272 117718 259 chain 23842 chr17 81195210 + 73944628 73944919 AluSp 311 - 5 300 111236 262 0 4 29 chain 21361 chr17 81195210 + 73968136 73968425 AluY 311 + 0 300 122648 23 1 0 23 0 9 67 3 5 47 5 6 120 chain 26401 chr17 81195210 + 73970832 73971158 AluY 311 + 1 310 98407 74 14 0 51 3 0 184 chain 13099 chr17 81195210 + 73981977 73982120 L1PA5 6144 - 5 148 147849 143 chain 22636 chr17 81195210 + 73985492 73985781 AluSc5 308 - 13 296 117392 14 3 0 163 3 0 106 chain 22877 chr17 81195210 + 74027047 74027336 AluSp 311 + 10 304 116201 123 15 5 110 0 15 41 chain 11784 chr17 81195210 + 74048528 74049001 L1PA8 5853 + 5688 5847 153116 50 4 3 21 313 0 85 chain 21303 chr17 81195210 + 74105439 74105754 AluSp 311 + 0 305 122847 44 22 30 37 22 5 16 1 0 173 chain 7606 chr17 81195210 + 74109407 74109587 THE1B 368 + 121 306 173507 48 1 0 17 13 19 4 1 0 4 0 1 14 24 22 26 8 10 20 chain 9703 chr17 81195210 + 74110983 74111136 L1MA3 4352 + 4200 4352 162074 35 4 0 23 2 0 22 0 10 23 1 0 15 6 2 22 chain 7582 chr17 81195210 + 74161119 74161277 MER44A 345 + 191 345 173658 43 55 51 60 chain 14303 chr17 81195210 + 74205466 74205687 MER30 238 + 0 238 143554 15 0 18 11 5 0 63 3 13 65 3 0 14 3 0 39 chain 6154 chr17 81195210 + 74232111 74232203 MLT2C1 407 + 103 199 183955 63 4 7 7 0 1 18 chain 129813 chr17 81195210 + 74252721 74254294 LTR12C 1709 - 0 1709 28131 38 2 1 14 4 17 147 14 129 15 0 8 112 0 4 105 5 3 4 1 0 275 1 0 120 0 2 428 17 16 271 chain 13337 chr17 81195210 + 74321563 74322098 Tigger1 2417 + 2077 2313 146947 17 1 0 70 9 23 12 324 8 43 1 0 43 0 5 15 chain 21520 chr17 81195210 + 74328973 74329206 AluYf4 310 - 12 245 122072 233 chain 9167 chr17 81195210 + 74333396 74333500 U6 107 + 0 104 164716 104 chain 24789 chr17 81195210 + 74345109 74345398 AluSp 311 + 0 295 105947 115 0 6 174 chain 26844 chr17 81195210 + 74348446 74348753 AluY 311 + 2 310 96823 130 0 1 177 chain 28830 chr17 81195210 + 74353195 74353633 MER51B 395 + 0 395 89761 31 21 8 77 37 7 122 1 0 5 5 6 139 chain 19914 chr17 81195210 + 74359283 74359543 MER51B 395 + 0 278 127423 149 0 1 71 0 17 7 1 0 9 6 7 17 chain 39794 chr17 81195210 + 74551000 74551835 MER41A 554 - 15 554 69635 53 10 12 51 307 0 9 0 4 214 7 11 161 1 2 22 chain 25267 chr17 81195210 + 74552237 74552536 AluSp 311 + 0 303 103381 91 0 4 208 chain 11298 chr17 81195210 + 74556419 74556627 MER30 238 - 0 198 155064 10 0 1 28 0 3 70 57 43 43 chain 24106 chr17 81195210 + 74556785 74557075 AluSp 311 + 4 293 109710 165 1 0 124 chain 29195 chr17 81195210 + 74558380 74558693 AluYb8 318 + 0 312 88075 132 1 0 180 chain 4673 chr17 81195210 + 74579604 74579660 MSTC 436 - 51 108 198832 5 0 1 51 chain 29730 chr17 81195210 + 74602069 74602480 LTR7 482 - 0 482 85724 186 6 7 24 9 41 105 12 50 69 chain 294070 chr17 81195210 + 74603733 74607164 HERVH-int 3825 - 0 3825 13762 225 0 2 74 0 1 185 8 218 39 9 11 308 0 1 313 2 0 4 2 0 419 0 10 299 4 31 906 1 0 82 1 93 24 1 0 10 1 0 25 0 56 489 chain 29261 chr17 81195210 + 74607166 74607593 LTR7 482 - 0 482 87731 173 0 1 16 26 41 17 9 10 109 8 46 69 chain 3528 chr17 81195210 + 74610649 74610750 LTR12C 1709 - 995 1055 214913 38 46 5 17 chain 59096 chr17 81195210 + 74632703 74633367 SVA_B 1603 + 896 1603 53333 36 13 55 39 0 1 576 chain 33197 chr17 81195210 + 74636947 74637425 LTR15 485 + 0 475 78893 58 2 1 65 4 0 25 0 2 27 0 2 5 2 0 96 0 4 110 3 2 40 8 4 14 4 5 15 chain 25852 chr17 81195210 + 74647122 74647486 L1PA8 5853 - 0 348 100645 92 2 1 19 2 1 39 0 1 4 22 11 6 1 0 71 2 0 43 2 1 59 chain 8099 chr17 81195210 + 74652403 74652500 U6 107 + 6 103 170488 97 chain 3324 chr17 81195210 + 74661381 74661418 LTR61 567 - 0 37 218494 37 chain 6097 chr17 81195210 + 74662961 74663045 L1MB3 1562 - 46 128 184438 77 2 0 5 chain 23074 chr17 81195210 + 74690977 74691269 AluSq2 311 + 20 311 115280 105 1 0 186 chain 7311 chr17 81195210 + 74699716 74699808 HY4 93 - 0 92 175360 92 chain 6072 chr17 81195210 + 74743163 74743260 Tigger1 2417 + 1444 1545 184641 65 11 15 21 chain 8395 chr17 81195210 + 74748993 74749095 U6 107 + 0 105 168878 44 0 3 58 chain 18945 chr17 81195210 + 74758537 74758758 AluY 311 + 71 303 130241 98 0 11 123 chain 17450 chr17 81195210 + 74758769 74759092 LTR22B 500 - 151 447 134376 174 34 5 34 0 1 4 5 8 14 18 17 10 4 3 26 chain 7562 chr17 81195210 + 74759653 74759863 L1MB7 1623 - 554 722 173783 21 19 21 35 8 12 30 59 11 38 chain 3112 chr17 81195210 + 74760941 74761014 L1MA9 1812 - 252 322 222695 17 26 23 30 chain 24769 chr17 81195210 + 74773080 74773369 AluY 311 + 13 302 106061 289 chain 21182 chr17 81195210 + 74786757 74787040 AluSc 308 + 0 297 123268 41 0 16 92 8 7 101 1 0 40 chain 82444 chr17 81195210 + 74788864 74789927 MER11B 1079 - 6 1079 42566 14 9 10 172 0 1 101 1 5 98 1 0 77 36 35 39 0 2 205 0 4 51 3 0 8 0 1 13 0 2 235 chain 8928 chr17 81195210 + 74791147 74791279 MER2 342 + 58 199 165993 6 0 2 13 0 4 36 5 8 72 chain 3778 chr17 81195210 + 74792724 74792769 MER41B 635 - 24 69 210694 45 chain 18302 chr17 81195210 + 74799020 74799265 AluY 311 + 63 310 132069 69 0 1 54 6 7 116 chain 23968 chr17 81195210 + 74801711 74802002 AluSp 311 - 19 311 110525 22 0 1 269 chain 1956 chr17 81195210 + 74802663 74802731 LTR12C 1709 + 769 837 173207 68 chain 11967 chr17 81195210 + 74802823 74803051 LTR12C 1709 + 650 837 152332 33 72 31 123 chain 1528 chr17 81195210 + 74802861 74802892 LTR12C 1709 + 729 760 194872 31 chain 1036 chr17 81195210 + 74802892 74802928 LTR12C 1709 + 878 914 173207 36 chain 41940 chr17 81195210 + 74828123 74828670 MLT2A2 560 - 0 559 66699 70 0 1 65 11 22 401 chain 5143 chr17 81195210 + 74843377 74843520 L1MB5 1630 + 1207 1353 193623 59 64 67 20 chain 3573 chr17 81195210 + 74853865 74853907 MLT1D 503 - 48 90 214091 42 chain 3547 chr17 81195210 + 74884892 74884929 tRNA-Gly-GGA 38 + 0 37 214602 37 chain 7916 chr17 81195210 + 74887347 74887444 MLT1A0 366 - 210 309 171551 8 0 2 89 chain 7047 chr17 81195210 + 74894791 74894913 L1PB1 5432 - 12 126 177138 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 4 2 20 chain 6887 chr17 81195210 + 74949891 74950000 L1MC1 2226 - 339 445 178292 33 15 12 61 chain 6057 chr17 81195210 + 74956632 74956725 MLT2B4 540 - 424 521 184765 46 0 3 12 8 9 27 chain 35276 chr17 81195210 + 74966367 74966862 LTR10F 562 + 0 551 75825 112 4 32 18 5 33 33 0 3 25 7 0 10 9 15 130 1 0 94 1 0 46 chain 37430 chr17 81195210 + 74967632 74968134 MER41A 554 - 0 554 72924 138 10 22 192 11 0 7 0 10 72 8 49 64 chain 27677 chr17 81195210 + 74974140 74974505 THE1B 368 + 0 368 94122 15 2 0 22 0 5 126 1 0 23 2 0 7 0 4 28 1 0 12 1 0 85 0 1 40 chain 12992 chr17 81195210 + 74986820 74987019 MSTA 426 + 0 198 148269 96 8 9 43 9 7 43 chain 6636 chr17 81195210 + 74996843 74996929 L1PA16 3655 + 3465 3560 180201 34 0 9 52 chain 13455 chr17 81195210 + 75040493 75040648 L1PA3long 6157 + 6002 6157 146507 155 chain 25774 chr17 81195210 + 75063109 75063421 MER4E1 777 + 13 331 100997 4 0 1 22 0 4 14 0 1 272 chain 25101 chr17 81195210 + 75083781 75084111 MER41A 554 - 176 552 104288 243 18 64 69 chain 4070 chr17 81195210 + 75100535 75100585 MER4A1 472 - 0 50 206327 50 chain 5747 chr17 81195210 + 75105209 75105293 LTR54 533 - 128 217 187664 14 1 4 23 0 2 46 chain 25319 chr17 81195210 + 75106488 75107477 MER4E1 777 - 7 373 103128 133 0 1 55 625 2 35 5 8 41 4 0 91 chain 38542 chr17 81195210 + 75107539 75108023 THE1C-int 1605 + 1127 1605 71378 38 9 2 111 0 1 326 chain 24138 chr17 81195210 + 75123114 75123413 L1PA8A 6298 - 6 301 109535 84 1 0 29 3 0 182 chain 6259 chr17 81195210 + 75132881 75132958 MSTB 430 - 1 78 183095 77 chain 5366 chr17 81195210 + 75150195 75150261 MER2 342 + 146 212 191347 66 chain 5987 chr17 81195210 + 75154614 75154697 L1MB3 1562 - 218 300 185365 9 2 0 57 0 1 15 chain 8794 chr17 81195210 + 75171970 75172088 LTR28 1034 - 707 825 166677 4 1 0 17 1 2 95 chain 10658 chr17 81195210 + 75221721 75221851 MSTA 426 - 296 426 157574 130 chain 30043 chr17 81195210 + 75235972 75236290 AluYb8 318 - 0 318 84671 318 chain 21885 chr17 81195210 + 75254785 75255116 THE1D 372 + 0 313 120688 19 1 3 26 0 1 26 19 0 29 0 1 18 9 5 47 1 0 6 0 3 9 1 0 120 chain 22512 chr17 81195210 + 75287448 75287720 AluSp 311 + 1 288 117973 50 0 15 222 chain 6988 chr17 81195210 + 75333908 75333996 Tigger1 2417 - 31 119 177558 88 chain 27926 chr17 81195210 + 75357702 75358013 AluYk4 311 - 0 311 93257 311 chain 6012 chr17 81195210 + 75438190 75438260 HY1 111 + 0 70 185114 70 chain 7312 chr17 81195210 + 75460459 75460565 MER75 514 + 386 491 175354 23 9 8 74 chain 24055 chr17 81195210 + 75474606 75474902 AluSp 311 + 0 298 110017 124 0 3 78 2 1 92 chain 23948 chr17 81195210 + 75487622 75487909 AluSx1 309 + 10 304 110636 72 0 9 43 2 0 170 chain 15745 chr17 81195210 + 75510880 75511166 THE1B 368 - 62 368 139125 66 1 0 10 3 2 14 0 4 10 74 92 108 chain 44757 chr17 81195210 + 75517794 75519184 MER4A1_ 611 + 0 611 63324 70 5 4 46 315 9 220 0 8 69 480 0 185 chain 5143 chr17 81195210 + 75521818 75521960 LTR12C 1709 - 840 997 193628 11 25 0 13 1 41 31 15 0 7 5 20 34 chain 22552 chr17 81195210 + 75526359 75526680 MER1A 529 - 3 323 117798 61 40 38 93 0 1 127 chain 24395 chr17 81195210 + 75530235 75530568 THE1B 368 + 0 356 108104 44 0 15 113 1 0 35 1 2 97 5 13 37 chain 3247 chr17 81195210 + 75553675 75553709 MER68B 564 - 350 384 220070 34 chain 27376 chr17 81195210 + 75606267 75606667 MER57B1 401 - 0 401 95036 153 5 6 70 5 9 63 22 18 82 chain 39427 chr17 81195210 + 75612555 75613398 MER41A 554 + 0 533 70123 92 0 1 92 5 4 237 0 3 8 313 1 70 4 3 22 chain 22294 chr17 81195210 + 75616417 75616741 THE1B 368 - 12 366 118936 44 13 28 74 1 2 32 1 0 121 7 22 31 chain 25018 chr17 81195210 + 75629855 75630140 AluY 311 + 15 299 104688 118 1 0 166 chain 2756 chr17 81195210 + 75674474 75674503 MIRb 242 + 99 128 229361 29 chain 9741 chr17 81195210 + 75678360 75678485 MER85 139 - 0 135 161886 40 0 10 85 chain 28650 chr17 81195210 + 75698116 75698490 THE1C 375 - 0 375 90522 257 4 5 113 chain 17107 chr17 81195210 + 75699779 75700005 MER66C 541 - 18 243 135292 97 6 5 123 chain 14671 chr17 81195210 + 75702560 75702860 THE1C 375 + 5 345 142359 56 23 25 56 69 107 96 chain 9741 chr17 81195210 + 75733671 75733789 MER74A 558 - 210 328 161889 118 chain 3312 chr17 81195210 + 75763176 75763217 Ricksha_c 1012 - 414 454 218750 15 1 0 25 chain 5646 chr17 81195210 + 75769521 75769604 Tigger2a 444 + 125 212 188608 61 6 10 16 chain 167162 chr17 81195210 + 75771774 75773742 SVA_E 1901 + 0 1901 22379 145 3 0 335 0 40 297 1 0 25 0 1 80 0 46 5 1 0 121 1 0 5 147 0 793 1 0 8 chain 3364 chr17 81195210 + 75772793 75772846 SVA_E 1901 + 1227 1280 80568 53 chain 4026 chr17 81195210 + 75772846 75772889 SVA_E 1901 + 978 1021 153455 43 chain 4637 chr17 81195210 + 75772889 75772940 SVA_E 1901 + 923 974 90200 51 chain 10659 chr17 81195210 + 75781014 75781152 LTR39 781 - 157 294 157566 123 1 0 14 chain 6326 chr17 81195210 + 75787578 75787670 MER63D 473 + 365 456 182585 20 2 0 66 0 1 4 chain 30487 chr17 81195210 + 75788160 75788509 L1PA3long 6157 + 5809 6157 83456 86 4 3 259 chain 13882 chr17 81195210 + 75795982 75796199 AluSz 310 + 18 294 144975 163 27 88 20 2 0 5 chain 32585 chr17 81195210 + 75828376 75828870 MER1A 529 + 0 519 79881 17 25 49 59 20 21 70 2 0 240 8 10 53 chain 25936 chr17 81195210 + 75898198 75898577 THE1D 372 + 0 364 100273 75 18 0 96 25 28 165 chain 273741 chr17 81195210 + 75906379 75909894 L1PA6 6164 + 2970 6162 14987 109 0 1 103 1 2 4 0 1 247 0 1 45 0 1 879 0 8 34 3 6 210 0 1 1204 329 0 35 8 0 288 3 0 13 chain 4203 chr17 81195210 + 75911455 75911543 MIR 256 + 100 188 204496 7 2 0 31 24 26 24 chain 10073 chr17 81195210 + 75913699 75913811 AluY 311 + 82 195 160204 50 0 1 62 chain 16957 chr17 81195210 + 75915130 75915325 HERVH-int 3825 + 2166 2361 135709 195 chain 28683 chr17 81195210 + 75915447 75915862 LTR7B 505 + 0 491 90395 108 0 10 46 22 88 26 0 2 85 1 0 76 14 13 37 chain 5133 chr17 81195210 + 75918433 75918491 MER97a 834 - 171 229 193756 58 chain 53147 chr17 81195210 + 75931604 75932377 MER4E 760 - 0 760 56926 12 2 1 131 3 4 83 55 14 58 0 6 5 1 0 55 6 10 47 0 20 37 0 1 100 22 25 127 5 0 24 chain 9010 chr17 81195210 + 75941224 75941384 L1PB2 3958 + 3613 3770 165540 4 1 0 32 14 15 17 2 1 71 2 0 17 chain 6827 chr17 81195210 + 75966784 75966867 MER30 238 + 158 238 178738 41 3 0 39 chain 2865 chr17 81195210 + 75976278 75976308 L1PA8 5853 + 5763 5793 227590 30 chain 25016 chr17 81195210 + 76034480 76034779 AluY 311 + 8 302 104701 115 9 4 175 chain 8269 chr17 81195210 + 76059393 76059526 Tigger2a 444 - 254 390 169575 58 11 8 13 3 9 48 chain 14084 chr17 81195210 + 76069685 76069862 MER82 654 + 22 199 144279 177 chain 73025 chr17 81195210 + 76078155 76079028 MER11D 897 - 0 897 47014 113 0 1 166 2 25 592 chain 21835 chr17 81195210 + 76095412 76095775 THE1B 368 - 0 368 120874 114 48 54 27 2 1 80 1 0 14 14 15 63 chain 28643 chr17 81195210 + 76097156 76097559 THE1B-int 1605 - 1117 1553 90549 15 16 41 160 1 3 97 0 1 69 4 9 41 chain 39146 chr17 81195210 + 76097560 76098042 MER9a2 513 - 0 498 70543 235 0 18 197 1 0 32 1 0 16 chain 5457 chr17 81195210 + 76098047 76098111 THE1B 368 - 304 368 190451 64 chain 21126 chr17 81195210 + 76178186 76178470 AluSp 311 + 14 300 123470 39 1 0 140 2 0 35 13 18 54 chain 18744 chr17 81195210 + 76183778 76184067 AluSg 306 + 13 306 130838 27 1 14 181 11 10 12 26 18 31 chain 25372 chr17 81195210 + 76190779 76191074 AluSp 311 - 17 311 102823 42 1 0 252 chain 23238 chr17 81195210 + 76191586 76191876 AluSp 311 - 15 311 114503 234 9 15 47 chain 23342 chr17 81195210 + 76218476 76218755 AluSp 311 + 11 291 113968 130 0 1 149 chain 4520 chr17 81195210 + 76231001 76231053 MSTA 426 - 20 72 200553 52 chain 20082 chr17 81195210 + 76231371 76231610 AluSp 311 - 15 254 126883 239 chain 10317 chr17 81195210 + 76250092 76250221 MER85 139 - 0 139 159056 39 1 11 89 chain 5025 chr17 81195210 + 76278883 76278948 MER53 195 + 40 105 194879 65 chain 23919 chr17 81195210 + 76281733 76282012 AluSp 311 + 10 292 110815 81 0 3 198 chain 25885 chr17 81195210 + 76372592 76372887 AluSp 311 - 17 311 100500 117 1 0 177 chain 26218 chr17 81195210 + 76390624 76390935 AluSp 311 - 0 311 99131 311 chain 22427 chr17 81195210 + 76406244 76406528 AluSq2 311 + 18 303 118352 66 1 0 49 0 1 135 0 1 33 chain 131433 chr17 81195210 + 76461049 76462541 SVA_F 1814 + 9 1812 27767 690 0 40 65 0 40 53 0 241 32 0 1 485 8 0 141 3 0 15 chain 8049 chr17 81195210 + 76464270 76464431 MER2 342 + 131 295 170765 4 0 1 31 1 0 46 30 41 24 8 0 17 chain 4603 chr17 81195210 + 76474221 76474340 HAL1-2a_MD 234 + 0 192 199588 16 3 0 7 3 1 15 17 0 16 0 3 8 2 0 17 1 95 14 chain 9786 chr17 81195210 + 76508557 76508682 MER34A1 583 + 9 136 161674 13 0 2 112 chain 21575 chr17 81195210 + 76509198 76509517 MER4D1 891 + 63 408 121867 50 9 8 106 10 37 100 1 0 7 0 1 36 chain 28705 chr17 81195210 + 76539363 76539671 AluYb9 318 - 10 318 90315 308 chain 3107 chr17 81195210 + 76542328 76542367 MADE2 80 - 33 72 222787 39 chain 39963 chr17 81195210 + 76575531 76576053 MER41A 554 + 1 554 69376 59 4 14 61 0 7 69 0 12 174 1 2 58 0 1 96 chain 5754 chr17 81195210 + 76589904 76590075 MER4D 903 + 144 316 187607 28 86 87 57 chain 2753 chr17 81195210 + 76626715 76626766 MLT1C 463 + 373 428 229447 18 7 11 26 chain 12317 chr17 81195210 + 76634022 76634168 L1PA7 6471 + 6309 6455 150949 146 chain 13385 chr17 81195210 + 76645310 76645474 THE1C 375 - 207 375 146766 22 0 4 142 chain 2883 chr17 81195210 + 76663355 76663385 LTR57 402 + 101 131 227297 30 chain 15990 chr17 81195210 + 76664496 76665028 PABL_A 660 + 0 228 138383 14 0 1 69 320 14 77 0 1 52 chain 28713 chr17 81195210 + 76667618 76668102 LTR10E 629 - 68 629 90281 27 1 0 45 64 63 47 1 0 23 4 86 41 8 0 7 0 9 39 16 14 144 1 0 16 chain 22802 chr17 81195210 + 76686226 76686504 AluY 311 + 31 311 116564 101 0 1 14 5 6 158 chain 5591 chr17 81195210 + 76720595 76720699 MER20 218 - 94 185 189160 33 1 0 4 1 0 4 19 8 42 chain 7094 chr17 81195210 + 76744014 76744102 MER51B 395 + 230 317 176807 15 1 0 72 chain 22375 chr17 81195210 + 76773225 76773504 AluY 311 + 0 287 118603 47 4 10 74 1 2 61 0 1 92 chain 21996 chr17 81195210 + 76782303 76782587 AluSq10 312 + 0 295 120251 47 6 12 185 4 11 35 2 0 5 chain 8489 chr17 81195210 + 76902548 76902645 Tigger1 2417 - 244 340 168358 78 1 0 18 chain 34602 chr17 81195210 + 76906605 76907179 L1MA5A 2387 - 96 624 76753 61 24 0 12 3 0 35 7 0 28 3 1 36 6 10 39 1 0 32 34 12 194 0 9 59 chain 19437 chr17 81195210 + 76913150 76913362 AluYa5 310 + 98 307 128854 204 3 0 5 chain 2640 chr17 81195210 + 76954544 76954610 MLT1C 463 + 395 462 231166 27 26 27 13 chain 9274 chr17 81195210 + 76998192 76998337 MER30 238 + 61 238 164192 32 6 1 12 4 32 15 5 14 71 chain 31030 chr17 81195210 + 77006973 77007428 LTR7B 505 + 0 505 82468 93 0 31 83 22 44 4 1 0 152 0 1 4 1 0 29 14 13 12 6 7 7 2 0 25 chain 25443 chr17 81195210 + 77033203 77033510 AluSc5 308 - 2 308 102485 228 2 1 77 chain 7215 chr17 81195210 + 77052836 77052950 Tigger1 2417 - 89 201 175974 67 12 11 24 1 0 10 chain 2797 chr17 81195210 + 77057448 77057480 Tigger1 2417 + 2063 2095 228792 32 chain 22484 chr17 81195210 + 77058734 77059083 THE1B 368 - 0 368 118090 125 50 55 22 1 0 107 0 15 44 chain 16486 chr17 81195210 + 77062350 77062686 L1PB1 5432 + 5114 5420 136965 24 1 0 7 18 13 9 2 0 52 3 2 15 1 0 45 1 0 13 2 1 5 2 0 10 9 1 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 30457 chr17 81195210 + 77118530 77119000 L1MA2 4263 + 3654 4113 83520 8 1 0 140 8 5 63 12 14 70 11 11 93 7 0 17 2 1 29 1 0 8 chain 15809 chr17 81195210 + 77141937 77142260 MER1B 344 - 9 282 138928 49 32 21 98 17 18 46 55 15 26 chain 5161 chr17 81195210 + 77231114 77231179 Tigger5 388 + 303 368 193440 65 chain 11803 chr17 81195210 + 77314970 77315114 L1PA4 6152 + 6006 6152 153022 138 0 2 6 chain 19092 chr17 81195210 + 77348204 77348544 MSTA 426 + 0 375 129835 103 39 51 45 26 31 6 3 0 45 0 1 14 1 21 58 chain 24310 chr17 81195210 + 77473360 77473653 AluY 311 + 4 295 108599 126 1 2 150 3 0 13 chain 28420 chr17 81195210 + 77634063 77634487 L1PA11 4918 + 4078 4504 91501 106 0 5 4 0 1 60 1 2 75 1 0 64 15 12 52 15 13 16 1 0 9 0 2 5 chain 24977 chr17 81195210 + 77638202 77638508 AluYf4 310 - 11 310 104924 5 3 0 30 2 0 200 2 0 64 chain 8931 chr17 81195210 + 77638699 77638898 L1MB3 1562 - 193 391 165970 14 6 5 87 1 0 15 59 60 17 chain 5177 chr17 81195210 + 77714579 77714644 MER63A 208 - 88 153 193271 65 chain 3053 chr17 81195210 + 77736511 77736778 L1MB7 1623 + 1144 1410 223939 34 215 214 18 chain 13353 chr17 81195210 + 77744639 77744785 L1PA3long 6157 + 6011 6157 146873 146 chain 5314 chr17 81195210 + 77834745 77834840 MLT1C 463 + 51 138 191882 53 10 8 12 6 0 14 chain 12140 chr17 81195210 + 77869273 77871302 L1MB3 1562 + 873 1555 151652 21 95 85 15 1 0 94 1717 382 54 1 0 31 chain 23978 chr17 81195210 + 77872820 77873185 THE1D 372 - 0 372 110458 145 20 21 12 28 34 160 chain 20540 chr17 81195210 + 77882686 77882958 AluY 311 + 28 296 125506 90 4 0 21 7 4 7 0 3 143 chain 4460 chr17 81195210 + 77927315 77927367 MIR 256 - 147 199 201230 52 chain 25194 chr17 81195210 + 77968229 77968522 AluSq10 312 - 19 312 103775 293 chain 17001 chr17 81195210 + 78000000 78000228 AluSz6 309 + 61 287 135595 50 10 8 168 chain 31642 chr17 81195210 + 78025942 78026380 MLT2A1 477 - 0 476 81419 8 0 4 39 9 43 18 0 2 159 0 1 23 18 16 47 1 0 116 chain 3194 chr17 81195210 + 78049590 78049629 MADE1 96 + 56 96 221034 13 0 1 26 chain 4702 chr17 81195210 + 78123729 78123796 LTR64 526 - 5 71 198501 12 5 4 50 chain 30485 chr17 81195210 + 78127078 78127532 LTR7B 505 + 0 495 83461 108 0 10 57 0 38 12 31 25 5 1 0 23 0 2 49 1 0 36 1 0 30 0 1 45 14 13 41 chain 24784 chr17 81195210 + 78128322 78128620 AluYk11 308 - 12 308 105977 173 1 0 108 2 1 14 chain 12756 chr17 81195210 + 78133433 78133596 SVA_C 1631 - 1469 1625 149227 138 1 2 5 8 0 11 chain 21791 chr17 81195210 + 78141867 78142185 L1PA8 5853 - 0 318 121056 93 1 0 19 2 1 35 22 27 70 2 0 44 1 0 29 chain 5441 chr17 81195210 + 78150777 78150845 MLT1C 463 - 32 100 190594 68 chain 8352 chr17 81195210 + 78200912 78201063 MER30 238 - 3 192 169108 33 3 6 12 0 11 13 1 7 24 12 30 53 chain 6600 chr17 81195210 + 78220871 78220947 SVA_E 1901 - 1 77 180457 76 chain 28057 chr17 81195210 + 78220949 78221250 SVA_D 2077 - 306 608 92800 23 0 1 278 chain 7034 chr17 81195210 + 78231866 78231954 MER4E1 777 + 0 88 177229 88 chain 28402 chr17 81195210 + 78231965 78232343 LTR7 482 - 8 482 91568 41 13 14 113 0 1 45 0 44 65 0 50 101 chain 12373 chr17 81195210 + 78240609 78240761 Tigger1 2417 + 463 615 150743 152 chain 17714 chr17 81195210 + 78241041 78241254 AluSc 308 + 82 293 133662 110 2 0 101 chain 3743 chr17 81195210 + 78288318 78288412 HAL1-2a_MD 234 - 4 129 211293 16 24 0 27 11 66 16 chain 4031 chr17 81195210 + 78289182 78289306 HAL1-2a_MD 234 - 19 174 206920 24 6 0 11 10 59 16 1 4 5 9 0 10 12 6 20 chain 36631 chr17 81195210 + 78371127 78371581 LTR2 463 + 0 463 74054 55 1 4 47 4 5 296 0 4 14 0 1 37 chain 409334 chr17 81195210 + 78373333 78386853 Harlequin-int 5206 + 135 5195 9819 171 0 4 63 8 0 14 8397 0 19 0 1 119 0 1 155 1 0 421 70 10 94 0 3 667 0 1 256 11 1 363 0 4 73 0 1 727 8 6 69 0 4 787 2 0 44 7 8 314 8 10 4 0 1 5 3 0 640 chain 31218 chr17 81195210 + 78373593 78374020 LTR7B 505 + 0 494 82124 105 0 10 60 0 38 12 4 28 17 11 1 9 0 6 155 14 13 40 chain 15795 chr17 81195210 + 78377612 78377796 HERVH-int 3825 + 3642 3825 138966 35 1 0 148 chain 28567 chr17 81195210 + 78381562 78381981 LTR7B 505 + 0 499 90880 35 0 2 13 0 2 53 0 10 60 0 38 12 4 28 25 0 2 108 0 1 19 8 10 23 14 13 45 chain 36734 chr17 81195210 + 78386868 78387316 LTR2 463 + 7 463 73906 48 1 4 47 4 5 296 0 4 52 chain 2659 chr17 81195210 + 78437196 78437296 MLT1C 463 - 361 463 230909 28 22 23 11 25 26 14 chain 23576 chr17 81195210 + 78479557 78479837 AluSp 311 + 12 289 112705 120 3 0 157 chain 4366 chr17 81195210 + 78481157 78481229 L1MB2 1706 + 1399 1475 202377 40 9 13 23 chain 4289 chr17 81195210 + 78504208 78504314 MLT1C 463 + 10 117 203361 15 14 15 12 10 11 42 2 1 11 chain 108165 chr17 81195210 + 78510656 78511860 SVA_D 2077 - 7 2057 34664 615 0 1 15 0 536 117 1 310 456 chain 76067 chr17 81195210 + 78525007 78525976 LTR5_Hs 974 - 0 974 45437 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 118 1 0 167 chain 17271 chr17 81195210 + 78537093 78537341 AluSg4 309 + 41 257 134860 181 32 0 35 chain 29758 chr17 81195210 + 78547945 78548265 AluYb8 318 - 0 318 85620 200 2 0 118 chain 24329 chr17 81195210 + 78553006 78553291 AluSp 311 - 25 311 108494 144 3 4 138 chain 84067 chr17 81195210 + 78575361 78576273 SVA_F 1814 - 0 924 41876 10 2 0 676 0 1 116 1 0 49 0 15 49 1 0 8 chain 4561 chr17 81195210 + 78646240 78646295 HSMAR2 1300 - 0 55 200105 55 chain 112024 chr17 81195210 + 78689422 78690940 L1PB1 5432 - 12 1525 33657 16 1 0 13 2 1 20 1 0 18 0 25 16 8 0 10 2 0 5 1 0 15 1 0 44 22 20 47 3 1 11 4 0 7 15 13 23 5 0 8 6 9 335 5 1 131 0 2 39 1 0 683 chain 28521 chr17 81195210 + 78727152 78727452 AluYg6 310 + 0 300 91095 300 chain 65264 chr17 81195210 + 78737977 78738701 L1PA3long 6157 - 10 738 50437 7 1 0 38 0 4 108 1 2 569 chain 3971 chr17 81195210 + 78795244 78795298 L1PB3 3668 - 103 155 207815 36 3 1 15 chain 24297 chr17 81195210 + 78823330 78823601 AluSg7 307 - 20 291 108670 271 chain 1978 chr17 81195210 + 78888967 78889109 MER52A 1651 + 767 841 178758 38 68 0 36 chain 3283 chr17 81195210 + 78889285 78889319 MER52A 1651 + 807 841 219316 34 chain 2097 chr17 81195210 + 78889338 78889362 MER52A 1651 + 896 920 237663 24 chain 7274 chr17 81195210 + 78889385 78889502 MER52A 1651 + 767 920 175628 74 19 55 24 chain 2605 chr17 81195210 + 78889502 78889529 MER52A 1651 + 814 841 196056 27 chain 2097 chr17 81195210 + 78889548 78889572 MER52A 1651 + 896 920 237664 24 chain 6327 chr17 81195210 + 78889595 78889669 MER52A 1651 + 767 841 182576 74 chain 3905 chr17 81195210 + 78961380 78961443 LTR41 747 + 664 727 208769 24 4 5 15 1 0 19 chain 24037 chr17 81195210 + 78975639 78975922 AluSc 308 + 4 289 110126 269 0 2 14 chain 28021 chr17 81195210 + 78985304 78986124 LTR10D 510 - 0 510 92927 40 316 0 51 2 0 98 84 87 6 6 0 30 10 11 40 0 1 43 1 9 15 0 1 78 chain 25938 chr17 81195210 + 78992741 78993035 AluSp 311 - 16 310 100256 294 chain 3558 chr17 81195210 + 78996794 78996842 L1MB5 1630 + 1454 1540 214358 17 0 38 31 chain 6668 chr17 81195210 + 79135170 79135278 MLT1C 463 - 309 412 179923 6 0 2 8 1 0 13 9 3 71 chain 32047 chr17 81195210 + 79208640 79209106 LTR19A 502 + 0 490 80784 218 26 25 33 0 11 24 1 2 50 5 11 86 0 1 9 0 6 14 chain 24142 chr17 81195210 + 79217776 79218064 AluY 311 + 11 295 109509 115 4 0 169 chain 27734 chr17 81195210 + 79249251 79249540 AluYg6 310 + 0 289 93923 289 chain 22455 chr17 81195210 + 79321873 79322174 AluSp 311 + 11 299 118219 21 5 0 233 3 0 25 5 0 9 chain 118389 chr17 81195210 + 79324973 79326402 LTR12C 1709 - 4 1708 31651 80 1 0 153 0 1 243 0 4 106 4 2 4 1 0 163 0 279 199 22 7 32 0 1 183 0 6 166 0 2 56 0 1 16 chain 22944 chr17 81195210 + 79326402 79326662 AluY 311 + 26 287 115887 106 0 1 154 chain 23930 chr17 81195210 + 79344911 79345212 AluSc 308 + 0 299 110751 26 1 0 231 2 1 41 chain 24977 chr17 81195210 + 79346975 79347275 AluSc8 310 + 4 308 104923 127 0 4 173 chain 2512 chr17 81195210 + 79399447 79399510 HAL1-2a_MD 234 - 121 195 232991 11 4 1 15 0 23 16 9 0 8 chain 24637 chr17 81195210 + 79461047 79461323 AluSg 306 + 10 286 106796 276 chain 11716 chr17 81195210 + 79472071 79472199 AluY 311 + 4 132 153396 128 chain 3633 chr17 81195210 + 79498827 79498874 HAL1-2a_MD 234 - 124 234 213111 15 0 63 32 chain 26573 chr17 81195210 + 79508920 79509221 AluYa5 310 + 11 310 97750 50 6 4 245 chain 11679 chr17 81195210 + 79530796 79530960 L1PA16 3655 + 3402 3567 153569 136 12 13 16 chain 27924 chr17 81195210 + 79561017 79561330 AluYk4 311 + 0 311 93266 132 2 0 179 chain 29921 chr17 81195210 + 79577696 79578007 AluYb8 318 + 0 311 85035 311 chain 138480 chr17 81195210 + 79584693 79586244 SVA_D 2077 + 43 2077 26396 225 1 3 490 0 40 102 0 438 11 2 1 91 0 1 4 0 1 18 0 1 292 0 1 315 chain 22281 chr17 81195210 + 79594994 79595265 AluY 311 + 38 311 118991 94 0 1 31 0 1 146 chain 20266 chr17 81195210 + 79596218 79596513 AluSg7 307 - 9 307 126327 61 35 36 14 1 0 55 0 1 19 0 2 110 chain 4718 chr17 81195210 + 79605175 79605244 LTR8 732 - 24 103 198302 16 0 8 26 0 4 5 2 0 20 chain 25604 chr17 81195210 + 79606728 79607026 AluY 311 + 6 303 101707 119 2 1 177 chain 78804 chr17 81195210 + 79642787 79643779 LTR13 1007 + 0 1007 44146 74 0 5 46 0 2 116 4 0 138 4 5 40 0 2 255 0 2 14 2 0 113 0 1 19 7 8 73 1 6 5 0 2 81 chain 21563 chr17 81195210 + 79815885 79816158 AluSc 308 + 16 304 121911 55 1 3 172 0 11 15 0 2 30 chain 3552 chr17 81195210 + 79853443 79853481 AluYk11 308 + 39 77 214522 38 chain 26010 chr17 81195210 + 79883408 79883704 AluY 311 + 6 303 99976 128 0 1 168 chain 8264 chr17 81195210 + 79902383 79902544 MER21C 908 + 118 230 169603 42 51 1 5 0 1 63 chain 25352 chr17 81195210 + 79936115 79936418 AluY 311 + 0 299 102939 28 1 0 90 2 0 17 1 0 164 chain 75533 chr17 81195210 + 79996115 79997346 LTR13A 966 + 0 966 45753 75 307 13 24 9 3 92 0 34 414 0 2 112 1 0 197 chain 22999 chr17 81195210 + 79998932 79999259 HERVK11-int 2540 - 302 633 115627 117 18 23 71 7 6 114 chain 22872 chr17 81195210 + 79999387 79999659 MER11A 1151 - 0 272 116221 272 chain 20804 chr17 81195210 + 80000000 80000262 AluY 311 + 43 306 124583 89 0 1 10 4 1 6 0 3 153 chain 13964 chr17 81195210 + 80025173 80025352 MER4A1 472 + 281 462 144693 111 10 12 58 chain 56329 chr17 81195210 + 80132233 80132875 LTR6A 649 + 4 649 54948 381 0 2 202 1 0 10 0 2 48 chain 31681 chr17 81195210 + 80133258 80133689 MER4A1 472 + 0 472 81352 14 0 18 79 0 1 114 5 26 106 8 9 105 chain 40851 chr17 81195210 + 80133886 80134592 LTR14B 630 + 8 629 68094 227 84 0 9 1 0 100 7 28 19 0 9 24 41 5 5 2 0 80 3 1 22 9 19 73 chain 4281 chr17 81195210 + 80147918 80147968 Tigger2b_Pri 1066 + 477 527 203475 50 chain 4529 chr17 81195210 + 80156492 80156552 L1MDb 1215 + 675 735 200462 60 chain 18981 chr17 81195210 + 80164695 80164937 LTR8 732 + 31 273 130154 8 6 0 116 0 6 112 chain 8815 chr17 81195210 + 80254141 80254276 LTR22A 463 + 320 463 166584 17 16 20 75 0 4 27 chain 23252 chr17 81195210 + 80258265 80258552 AluSc5 308 + 0 293 114437 33 0 3 36 0 3 218 chain 15860 chr17 81195210 + 80270347 80270545 AluY 311 + 60 259 138777 66 0 1 132 chain 13941 chr17 81195210 + 80298874 80299121 HUERS-P3b-int 2065 - 977 1253 144789 38 9 14 49 0 2 57 12 17 45 8 26 10 4 3 15 chain 33886 chr17 81195210 + 80304258 80304709 LTR7C 471 - 10 471 77798 16 3 6 68 0 2 200 0 3 51 0 1 9 14 15 90 chain 43189 chr17 81195210 + 80325622 80326406 LTR71B 605 - 0 605 65185 20 6 0 7 5 11 45 0 5 37 0 2 69 190 0 219 0 5 38 17 15 53 0 1 78 chain 61925 chr17 81195210 + 80334689 80335352 SVA_D 2077 + 1411 2074 51932 663 chain 17895 chr17 81195210 + 80347696 80347907 AluY 311 + 83 293 133113 50 1 0 160 chain 102430 chr17 81195210 + 80411084 80412290 SVA_A 1864 - 9 1836 36157 526 11 295 89 3 0 33 3 336 266 0 7 275 chain 27979 chr17 81195210 + 80429387 80429683 AluYk12 309 + 1 297 93077 296 chain 23307 chr17 81195210 + 80439335 80439622 AluSp 311 + 11 298 114164 27 0 2 92 3 1 165 chain 6939 chr17 81195210 + 80452596 80452668 tRNA-Met-i 72 - 0 72 177906 72 chain 25840 chr17 81195210 + 80479045 80479347 AluSg4 309 - 8 309 100702 175 1 0 126 chain 3577 chr17 81195210 + 80486813 80486891 MER20 218 + 50 127 214016 9 2 0 6 0 2 5 9 11 5 3 0 39 chain 8537 chr17 81195210 + 80517661 80517766 MER50 708 - 108 213 168087 105 chain 25372 chr17 81195210 + 80527815 80528107 AluY 311 + 0 292 102820 32 1 0 100 0 1 159 chain 22343 chr17 81195210 + 80564779 80565066 AluSg 306 + 4 292 118729 260 0 2 7 0 2 6 3 0 11 chain 40043 chr17 81195210 + 80594517 80595046 LTR10G 522 + 0 519 69256 40 5 0 312 0 1 12 0 1 82 4 1 50 11 7 13 chain 22453 chr17 81195210 + 80599498 80599765 AluY 311 + 8 274 118225 125 1 0 141 chain 24765 chr17 81195210 + 80604085 80604388 AluSp 311 + 1 306 106080 90 0 3 179 1 0 33 chain 3842 chr17 81195210 + 80644288 80644355 MLT1C 463 + 85 146 209757 39 9 4 12 1 0 6 chain 2870 chr17 81195210 + 80670266 80670398 MER52A 1651 - 733 830 227539 27 85 50 20 chain 22192 chr17 81195210 + 80683790 80684050 AluSq 315 + 19 279 119386 260 chain 74408 chr17 81195210 + 80702407 80703373 LTR5_Hs 974 - 0 974 46312 97 24 24 19 8 15 67 8 0 7 0 8 81 1 0 72 0 1 115 0 1 178 0 1 121 1 0 167 chain 57226 chr17 81195210 + 80731924 80732563 SVA_B 1603 - 0 637 54386 6 2 0 86 0 1 534 1 0 10 chain 17663 chr17 81195210 + 80733580 80733777 L1PA3long 6157 + 5960 6157 133797 197 chain 80626 chr17 81195210 + 80735170 80736157 LTR13 1007 - 0 1007 43332 94 0 5 68 7 8 19 0 1 163 0 8 255 4 5 258 0 4 119 chain 10080 chr17 81195210 + 80815660 80815777 L1PA2 6032 - 3 118 160177 10 2 0 105 chain 5561 chr17 81195210 + 80908863 80908981 MER85 139 - 0 134 189469 40 40 56 38 chain 297486 chr17 81195210 + 80910243 80914040 L1PA8 5853 + 1996 5853 13555 22 0 1 252 0 11 203 0 4 48 12 16 275 1 8 46 1 0 13 0 9 30 0 4 8 12 23 327 0 2 26 1 5 7 0 5 53 0 4 244 0 1 59 0 3 92 0 2 285 0 4 100 0 5 22 4 1 48 0 7 410 1 2 33 0 7 261 0 4 17 0 6 54 0 4 13 0 2 12 0 3 44 44 0 198 0 1 14 8 7 201 1 0 45 2 0 69 14 12 50 2 1 14 6 5 93 chain 12580 chr17 81195210 + 80939653 80939852 Tigger2 2703 - 91 282 149919 41 36 28 122 chain 43995 chr17 81195210 + 80945592 80946098 L1PA10 4194 - 44 547 64211 34 3 0 469 chain 18195 chr17 81195210 + 80949113 80949395 THE1B 368 + 0 283 132342 47 0 1 63 5 6 52 31 24 30 0 6 54 chain 116132 chr17 81195210 + 80953558 80955760 L1MA3 4352 + 2411 4093 32404 105 244 0 61 8 6 126 326 18 92 0 6 552 0 2 7 20 22 40 0 4 60 0 1 5 1 0 6 10 16 26 9 8 284 0 1 22 9 24 29 17 16 143 chain 4605 chr17 81195210 + 80953671 80953729 L1MA3 4352 + 2518 2577 199569 4 0 1 54 chain 6211 chr17 81195210 + 80958136 80958459 Tigger2b_Pri 1066 - 525 848 183494 15 1 0 24 203 211 6 4 0 13 3 0 44 1 0 4 0 1 5 chain 29062 chr17 81195210 + 80986118 80986428 AluYf4 310 + 0 310 88715 310 chain 12164 chr17 81195210 + 81112724 81112903 HSMAR2 1300 + 3 195 151560 42 17 30 120 chain 4247 chr17 81195210 + 81185959 81186119 MER31-int 1156 - 878 941 203915 52 97 0 11 chain 3293 chr17 81195210 + 81192389 81192424 MER72 723 - 8 43 219112 35 chain 168272 chr18 78077248 + 29644 32269 L1PA7 6471 + 4102 6455 22253 385 5 6 49 2 0 5 1 3 112 12 16 20 1 2 149 1 0 8 7 8 33 5 1 64 1 0 4 1 0 4 0 3 123 0 1 52 6 4 5 0 2 142 2 1 198 0 2 51 1 5 62 0 2 292 0 25 67 1 2 112 7 25 59 328 1 248 chain 538493 chr18 78077248 + 35813 41815 L1PA3long 6157 + 19 6152 3071 134 0 1 163 1 0 263 0 4 192 0 128 1423 1 2 368 1 0 601 1 0 2854 chain 6669 chr18 78077248 + 54739 54817 L1MA2 4263 - 205 283 179910 78 chain 21221 chr18 78077248 + 55117 55378 AluSg7 307 - 25 287 123139 150 1 2 110 chain 3803 chr18 78077248 + 67611 67655 MLT2B3 573 + 0 44 210358 44 chain 23584 chr18 78077248 + 72693 72965 AluSp 311 + 11 282 112667 57 3 0 195 0 2 17 chain 22671 chr18 78077248 + 73700 73994 AluSc 308 + 14 308 117207 33 6 8 9 2 0 244 chain 23050 chr18 78077248 + 93596 93871 AluY 311 + 8 286 115393 64 0 3 211 chain 28862 chr18 78077248 + 118951 119282 L1PA7 6471 - 3 332 89612 7 2 0 322 chain 117861 chr18 78077248 + 128981 130830 THE1B-int 1605 - 0 1605 31847 46 320 0 313 8 18 36 0 2 125 8 25 39 0 2 90 0 3 204 0 2 22 1 4 93 1 11 113 0 25 414 4 6 12 chain 16619 chr18 78077248 + 142878 143146 MER4B 649 + 24 344 136614 84 57 109 127 chain 35571 chr18 78077248 + 240645 241111 MER1A 529 - 6 466 75449 63 16 8 229 5 7 153 chain 13648 chr18 78077248 + 254579 254760 Tigger1 2417 + 62 255 145790 8 0 6 60 4 10 109 chain 3904 chr18 78077248 + 258255 258299 Tigger1 2417 + 1594 1638 208796 44 chain 7347 chr18 78077248 + 281560 281687 Tigger1 2417 + 466 597 175118 62 33 37 32 chain 24798 chr18 78077248 + 283023 283319 AluSp 311 + 11 306 105902 129 1 2 156 2 0 8 chain 52981 chr18 78077248 + 289850 290506 L1PA8 5853 + 5199 5853 57026 76 0 3 286 2 1 45 2 0 70 1 0 12 0 1 47 2 1 19 2 1 92 chain 33358 chr18 78077248 + 291798 292234 MER57A1 433 + 0 433 78639 71 5 0 14 6 2 239 0 6 101 chain 8294 chr18 78077248 + 308602 308715 MLT1B 390 + 0 114 169433 25 3 4 85 chain 78090 chr18 78077248 + 349075 350098 THE1A-int 1579 + 552 1579 44466 53 0 1 48 0 3 471 0 1 159 7 8 82 1 0 78 14 0 7 1 15 84 1 0 17 chain 23710 chr18 78077248 + 350105 350441 THE1A 353 + 7 353 111978 87 1 0 17 0 2 6 8 6 42 11 22 164 chain 3702 chr18 78077248 + 360491 360537 MER5A 189 - 114 160 211910 46 chain 12996 chr18 78077248 + 369449 369597 L1HS 6032 - 1 146 148261 140 3 0 5 chain 6782 chr18 78077248 + 386371 386534 MER5A1 166 + 0 165 179090 16 66 68 81 chain 76355 chr18 78077248 + 404535 405591 MER11A 1151 + 0 1146 45287 55 0 99 22 8 0 54 1 0 64 4 0 146 0 1 40 0 24 33 0 1 143 0 3 38 0 1 111 25 1 11 8 15 22 15 0 36 0 1 60 6 7 119 0 4 35 chain 30447 chr18 78077248 + 405842 406227 MER41A 554 + 0 388 83537 42 0 1 40 4 5 117 0 1 182 chain 29710 chr18 78077248 + 406227 406540 AluYb8 318 + 0 313 85795 313 chain 46363 chr18 78077248 + 418436 418986 MER41A 554 + 0 554 61717 408 0 4 142 chain 20888 chr18 78077248 + 435207 435583 THE1D 372 - 0 372 124327 134 70 72 27 2 3 28 0 1 28 4 5 27 10 1 46 chain 3929 chr18 78077248 + 449628 449849 LTR16B1 483 + 69 289 208442 17 66 63 14 85 87 39 chain 9948 chr18 78077248 + 451775 451981 MST-int 1221 + 241 439 160846 65 1 0 24 20 0 9 7 27 4 1 0 10 21 15 44 chain 32119 chr18 78077248 + 455492 455958 L1PA8 5853 - 0 446 80654 93 1 0 19 2 1 46 3 1 13 2 1 71 2 0 44 1 0 28 0 1 65 24 11 52 chain 21156 chr18 78077248 + 483123 483417 AluSx1 309 + 6 300 123353 184 15 18 35 1 0 25 5 3 29 chain 82738 chr18 78077248 + 511993 513010 SVA_E 1901 - 338 1901 42444 287 31 40 35 0 126 52 4 263 71 0 156 205 8 5 177 1 0 146 chain 1775 chr18 78077248 + 512280 512311 SVA_E 1901 - 1097 1168 161933 4 0 40 27 chain 23093 chr18 78077248 + 528561 528834 AluSp 311 + 11 285 115174 130 0 1 143 chain 560843 chr18 78077248 + 535701 541726 L1HS 6032 + 1 6032 318 73 0 1 1493 1 4 2650 0 3 1065 1 0 742 chain 119923 chr18 78077248 + 546644 548524 THE1A-int 1579 - 0 1579 31083 198 6 7 50 0 1 319 21 21 14 0 2 150 0 1 46 10 14 248 7 6 66 1 0 4 1 2 60 311 1 331 0 1 37 chain 27915 chr18 78077248 + 548524 548879 THE1A 353 - 0 353 93303 151 1 0 92 2 1 109 chain 5296 chr18 78077248 + 552961 553036 L1PB1 5432 + 5348 5420 192055 22 1 0 21 1 0 13 1 0 16 chain 20554 chr18 78077248 + 601360 601659 AluSc5 308 + 0 293 125462 52 18 16 36 9 5 184 chain 36454 chr18 78077248 + 633492 633989 LTR10F 562 - 8 562 74290 128 1 2 29 3 0 139 0 87 41 29 1 127 chain 3235 chr18 78077248 + 640464 640500 LTR37B 484 - 448 484 220338 36 chain 333190 chr18 78077248 + 662518 666167 L1PA3long 6157 - 0 3654 12083 5 0 2 485 1 0 2399 0 4 759 chain 9822 chr18 78077248 + 727911 728053 Tigger4b 360 - 1 141 161488 52 5 4 45 2 1 38 chain 19598 chr18 78077248 + 734599 734868 L1PB2 3958 + 3460 3721 128388 81 6 0 76 1 0 64 2 1 39 chain 2670 chr18 78077248 + 737970 738001 MER58C 217 + 75 106 230782 31 chain 3047 chr18 78077248 + 740446 740483 L1MC4 1079 + 841 878 224069 37 chain 36929 chr18 78077248 + 759742 760157 L1PA5 6144 - 27 446 73616 28 0 4 387 chain 12771 chr18 78077248 + 769003 769207 Tigger3a 397 + 154 353 149174 61 9 18 43 20 6 71 chain 13606 chr18 78077248 + 785079 785263 MER30B 195 + 5 190 145956 56 1 2 4 1 0 26 0 1 96 chain 6699 chr18 78077248 + 785566 785722 MSTD 398 + 0 158 179694 15 5 6 66 48 49 22 chain 5795 chr18 78077248 + 791949 792015 MER33 330 - 222 288 187190 66 chain 33500 chr18 78077248 + 795464 795913 L1PA8 5853 + 5403 5846 78410 121 1 0 40 2 1 44 2 0 69 2 1 8 2 1 12 0 1 39 2 1 10 0 1 8 1 0 86 chain 29674 chr18 78077248 + 828484 828800 AluYb9 318 + 0 316 85925 316 chain 23311 chr18 78077248 + 831462 831756 MER4E 760 + 457 751 114152 16 5 0 7 0 5 266 chain 13636 chr18 78077248 + 835473 835636 L1PA2 6032 + 5868 6032 145834 148 1 2 14 chain 48415 chr18 78077248 + 836733 837581 L1HS 6032 - 1 533 60168 370 316 0 162 chain 29435 chr18 78077248 + 837111 837418 AluYb8 318 - 11 318 86922 307 chain 19822 chr18 78077248 + 838987 839335 THE1B 368 - 0 368 127745 56 7 6 51 15 0 8 43 78 52 9 10 107 chain 39462 chr18 78077248 + 841441 841997 LTR2C 499 + 3 499 70067 57 1 2 110 29 20 56 53 0 187 0 1 63 chain 20466 chr18 78077248 + 843534 843781 L1PA5 6144 - 6 254 125715 140 10 11 97 chain 3211 chr18 78077248 + 851157 851191 MADE1 96 - 4 38 220726 34 chain 8976 chr18 78077248 + 873160 873354 L1PA16 3655 + 3451 3619 165741 102 27 24 8 11 0 4 1 0 6 6 0 8 5 0 16 chain 36658 chr18 78077248 + 874031 874488 MER41A 554 - 85 554 74013 180 0 11 205 2 3 70 chain 114623 chr18 78077248 + 874501 876023 MER41-int 2638 - 6 1498 32917 66 0 1 153 0 5 224 3 4 268 2 0 36 2 0 178 2 1 48 2 7 37 43 5 272 0 1 186 chain 15198 chr18 78077248 + 888484 888659 L1PB4 2604 - 46 221 140779 175 chain 99644 chr18 78077248 + 951867 953059 L1PA3long 6157 - 8 1240 36872 104 0 49 6 1 0 4 3 4 579 10 1 485 chain 64597 chr18 78077248 + 968761 970802 L1PA8 5853 - 0 3296 11511 93 1 0 6 1 18 40 2 3 14 2 1 70 2 0 46 1 0 164 0 1 89 0 34 265 2 0 265 0 1203 502 0 10 14 4 0 458 chain 541980 chr18 78077248 + 970867 976879 L1PA3long 6157 - 5 6153 2508 333 0 1 2555 2 1 631 1 0 323 0 1 99 0 2 354 0 1 602 0 1 83 0 3 258 0 128 31 4 3 589 0 1 81 0 1 66 chain 96531 chr18 78077248 + 976880 979930 L1PA8 5853 - 3296 5803 11511 384 0 1 597 435 0 24 0 1 135 1 0 132 82 6 132 1 0 476 1 3 63 0 4 290 0 4 192 71 31 10 2 0 22 chain 35247 chr18 78077248 + 977876 978272 L1PA5 6144 + 5748 6144 75863 396 chain 19881 chr18 78077248 + 986917 987297 MSTA 426 - 0 426 127545 101 9 29 32 58 60 56 30 54 94 chain 10566 chr18 78077248 + 989086 989228 L1PA5 6144 + 5995 6144 157971 91 13 20 38 chain 9856 chr18 78077248 + 1004221 1004370 MSTB 430 - 279 430 161310 77 3 4 14 10 11 45 chain 491599 chr18 78077248 + 1029350 1035440 L1PA6 6164 - 2 6164 7288 842 0 5 578 0 27 10 0 1 200 0 2 91 4 1 35 6 8 180 1 2 72 0 2 133 0 1 226 0 1 215 0 1 328 4 5 857 4 0 14 2 0 158 0 1 288 1 0 41 1 0 347 0 38 165 4 5 147 12 11 320 0 17 218 1 0 119 19 0 22 32 34 224 12 12 42 0 1 115 chain 404107 chr18 78077248 + 1040075 1045615 L1PB1 5432 + 19 5420 9974 387 1 0 138 8 1 16 0 3 198 1 0 261 14 0 380 17 0 289 0 16 48 0 1 68 0 9 317 0 1 122 8 0 217 0 4 88 0 5 203 1 15 36 1 0 12 1 2 369 1 5 493 23 15 23 7 10 191 0 1 105 0 5 97 0 1 23 0 1 24 0 1 180 0 20 125 0 1 82 3 0 175 1 5 53 0 1 240 152 6 6 1 0 17 5 4 10 2 1 10 6 2 10 2 0 52 18 16 25 5 7 12 1 0 16 1 0 6 16 6 19 24 19 24 1 0 17 22 20 13 chain 41824 chr18 78077248 + 1046580 1047107 L1PA8 5853 - 0 524 66860 79 0 1 13 1 0 19 2 1 47 2 0 14 2 3 5 0 1 62 2 0 44 1 0 106 0 1 128 chain 29129 chr18 78077248 + 1058500 1058876 THE1C 375 - 0 375 88411 45 1 0 330 chain 31646 chr18 78077248 + 1060815 1061285 MLT2A1 477 + 0 477 81411 140 10 11 15 4 8 74 0 1 136 4 0 6 6 0 8 11 0 9 8 30 39 chain 402819 chr18 78077248 + 1083279 1088993 L1PB1 5432 - 20 5413 10002 8 1 0 13 1 0 21 1 0 24 2 0 14 32 20 16 3 0 15 1 0 44 1 0 16 2 1 53 31 20 6 0 3 11 327 24 339 4 2 141 3 0 803 4 6 75 7 0 6 0 10 181 0 1 1384 0 1 201 0 1 346 0 5 60 31 34 74 26 23 8 5 0 7 1 0 78 3 0 157 43 56 348 1 0 584 16 17 97 11 12 27 chain 86575 chr18 78077248 + 1098034 1099322 LTR12C 1709 + 0 1709 40941 29 57 47 189 1 2 24 8 9 20 3 0 144 16 12 38 1 0 4 0 1 181 0 319 53 0 49 87 24 0 16 11 4 168 0 102 114 16 13 84 chain 72970 chr18 78077248 + 1101116 1102903 L1PA3long 6157 - 1 913 47039 537 916 0 272 0 1 4 27 67 31 chain 269839 chr18 78077248 + 1111845 1115712 L1PBa 3878 - 176 3712 15186 294 0 4 110 4 5 7 1 0 62 4 1 69 0 4 383 340 0 55 0 1 36 2 1 156 0 1 248 2 0 349 2 0 214 6 5 81 0 2 361 1 0 273 1 0 207 8 16 49 5 6 172 8 7 281 4 5 24 1 0 47 chain 42269 chr18 78077248 + 1115819 1116403 LTR12_ 688 - 133 688 66309 94 62 33 428 chain 57213 chr18 78077248 + 1123311 1123992 L1PA7 6471 - 25 706 54392 130 0 1 36 1 0 139 1 0 126 0 1 248 chain 82486 chr18 78077248 + 1143759 1144837 MER11A 1151 - 0 1151 42546 36 0 4 34 0 4 105 0 1 26 1 0 57 1 2 20 30 0 23 1 0 149 5 6 114 1 0 276 4 0 139 1 100 55 chain 80862 chr18 78077248 + 1145026 1145927 L1PA3long 6157 - 8 964 43244 261 4 59 636 chain 102921 chr18 78077248 + 1157768 1158962 L1PA6 6164 - 15 1207 36016 317 4 0 342 0 2 531 chain 22747 chr18 78077248 + 1183242 1183490 L1PA4 6152 - 5 253 116837 248 chain 58194 chr18 78077248 + 1196372 1197013 L1PA4 6152 + 5510 6151 53868 641 chain 387936 chr18 78077248 + 1205162 1210204 L1PB1 5432 - 329 5420 10523 34 0 1 442 5 0 280 0 7 114 0 3 230 0 1 24 6 5 230 4 6 112 0 2 609 0 2 64 0 2 93 2 0 22 0 1 124 2 0 5 0 2 188 0 2 151 5 50 37 22 21 534 4 5 68 0 1 16 0 1 211 13 15 136 4 0 6 23 10 72 0 1 5 1 0 6 0 1 194 0 1 117 8 7 57 0 3 360 1 0 393 1 0 7 chain 29874 chr18 78077248 + 1231740 1232227 L1PA13 3608 - 123 597 85190 17 1 0 20 9 5 47 2 0 8 54 52 63 2 0 113 1 0 30 1 0 119 chain 32297 chr18 78077248 + 1232241 1232630 L1PA7 6471 - 15 404 80369 389 chain 43878 chr18 78077248 + 1298914 1299435 L1PA10 4194 - 186 708 64358 228 0 1 293 chain 9334 chr18 78077248 + 1299435 1299575 L1PA10 4194 + 4013 4150 161918 88 21 18 31 chain 18143 chr18 78077248 + 1323846 1324062 7SK 245 - 5 221 132483 216 chain 39356 chr18 78077248 + 1325677 1326128 L1PA4 6152 + 5694 6143 70242 313 4 0 72 0 2 62 chain 18632 chr18 78077248 + 1326206 1326542 L1MA2 4263 + 3778 4113 131129 24 3 0 68 31 43 43 11 9 87 15 8 45 1 0 8 chain 232243 chr18 78077248 + 1329650 1332805 HERVL-int 5654 + 0 5654 17184 110 0 1 76 0 1 50 33 2807 124 0 2 193 5 6 736 1 0 789 0 3 61 0 3 240 1 3 13 0 1 212 0 16 120 304 0 87 chain 29657 chr18 78077248 + 1332805 1333327 MLT2A1 477 + 0 477 86041 86 0 2 54 0 1 18 8 12 22 2 0 190 102 53 20 2 1 18 chain 522189 chr18 78077248 + 1335218 1341360 L1PA5 6144 + 1 6144 4937 92 0 7 20 0 14 19 2 1 440 0 1 234 0 5 118 25 0 211 15 6 83 0 4 179 2 1 5 0 1 105 0 1 623 0 1 141 7 6 436 0 1 1438 2 3 722 1 0 101 0 1 250 0 5 18 2 0 53 1 0 797 chain 3911 chr18 78077248 + 1347014 1347060 MADE1 96 + 0 46 208688 46 chain 12228 chr18 78077248 + 1351534 1351670 L1PA3long 6157 + 6017 6153 151307 136 chain 89576 chr18 78077248 + 1354331 1355314 L1PA2 6032 + 5048 6031 39788 983 chain 9819 chr18 78077248 + 1359626 1359753 MER85 139 + 1 139 161498 98 0 11 29 chain 9915 chr18 78077248 + 1359780 1359936 MLT2D 439 - 278 435 160990 72 25 26 59 chain 15428 chr18 78077248 + 1385351 1385523 L1PA5 6144 + 5962 6134 140106 172 chain 165017 chr18 78077248 + 1385534 1388112 L1PA13 3608 + 930 3522 22652 176 0 1 10 0 3 136 19 19 35 2 0 5 0 2 97 0 13 141 1 2 38 14 15 255 42 50 21 0 10 40 0 3 249 0 5 59 3 4 201 6 7 52 1 0 278 0 2 26 6 8 23 0 4 13 63 69 123 66 51 82 0 1 4 2 1 10 2 0 57 5 4 46 30 21 42 15 6 18 1 0 14 0 3 12 18 7 14 1 0 4 chain 20546 chr18 78077248 + 1444435 1444668 L1PA4 6152 + 5918 6151 125482 233 chain 25611 chr18 78077248 + 1461479 1461762 AluY 311 + 0 291 101671 10 0 6 115 0 2 158 chain 27440 chr18 78077248 + 1470186 1470540 THE1A 353 - 0 353 94850 233 16 15 105 chain 36161 chr18 78077248 + 1471088 1471598 MLT2A2 560 + 1 535 74692 149 0 8 143 26 29 6 1 0 66 0 11 10 8 11 101 chain 30879 chr18 78077248 + 1478083 1478421 L1PA3long 6157 + 5819 6157 82720 338 chain 548616 chr18 78077248 + 1516200 1522241 L1PA2 6032 - 20 6032 1621 727 9 0 78 0 3 1805 0 2 2592 4 0 37 19 1 31 3 0 480 1 0 183 0 1 72 chain 147758 chr18 78077248 + 1533814 1535432 L1PA3long 6157 + 4525 6149 24913 1612 0 6 6 chain 14024 chr18 78077248 + 1537838 1538031 L1PA8 5853 - 0 190 144487 93 1 0 16 5 4 61 1 0 16 chain 5145 chr18 78077248 + 1564973 1565032 MSTB1 431 + 142 201 193595 59 chain 18908 chr18 78077248 + 1609009 1609256 L1PA7 6471 - 1 246 130339 4 1 0 150 8 7 84 chain 31813 chr18 78077248 + 1611341 1611812 MER4A1 472 + 2 472 81143 18 5 6 5 1 0 49 1 0 136 0 1 8 0 21 21 40 19 124 1 0 62 chain 84184 chr18 78077248 + 1632155 1633059 L1PA2 6032 - 1116 2020 41766 904 chain 101474 chr18 78077248 + 1633059 1634184 L1PA2 6032 + 4913 6029 36406 363 9 0 753 chain 27625 chr18 78077248 + 1635835 1636152 L1PA7 6471 - 14 334 94280 41 0 2 108 0 1 168 chain 30774 chr18 78077248 + 1639681 1640187 L1PREC2 3366 + 136 620 82913 22 14 23 19 9 4 5 1 0 23 1 0 14 1 0 11 3 1 8 0 2 23 2 1 114 1 0 64 10 9 58 15 0 5 5 0 78 chain 322898 chr18 78077248 + 1641180 1644853 L1PA4 6152 - 0 3675 12486 6 1 0 254 1 0 1203 1 0 807 0 1 698 1 0 404 16 17 189 0 4 92 chain 16024 chr18 78077248 + 1644853 1645032 L1PA5 6144 + 4503 4682 137495 179 chain 120205 chr18 78077248 + 1645033 1646461 L1PA5 6144 + 4682 6128 30980 615 0 4 171 2 1 132 0 13 273 3 1 94 1 5 137 chain 13287 chr18 78077248 + 1671947 1672109 L1PA7 6471 - 3 165 147139 162 chain 170012 chr18 78077248 + 1685513 1688160 MER57-int 2662 - 36 2622 22049 22 27 21 24 4 1 10 1 0 5 1 0 18 65 28 7 1 0 54 18 12 22 8 21 46 10 8 67 0 3 142 0 2 157 1 0 47 11 7 13 8 5 43 33 16 258 3 4 24 1 0 70 2 0 63 2 0 7 1 3 49 1 0 22 0 1 232 4 0 279 14 12 34 3 4 99 11 10 212 0 6 56 0 2 63 2 0 22 0 24 161 1 0 11 46 28 29 chain 39581 chr18 78077248 + 1690216 1690764 MLT2A2 560 + 0 560 69920 28 0 5 310 7 8 14 4 0 42 0 11 79 7 6 57 chain 422216 chr18 78077248 + 1700421 1705790 L1PA8 5853 + 461 5847 9482 9 0 10 355 20 0 383 6 19 305 0 1 111 2 1 182 0 1 49 0 2 261 10 0 71 2 0 40 1 3 213 4 8 17 0 9 131 0 1 71 2 0 29 0 1 1037 0 5 173 4 0 50 0 1 37 0 10 113 0 1 143 64 63 556 5 6 66 1 4 279 0 1 139 0 1 84 4 0 32 0 1 18 1 0 44 3 1 69 2 1 9 1 0 55 1 0 17 1 0 87 chain 78753 chr18 78077248 + 1723272 1724513 L1PA11 4918 - 340 1547 44169 11 2 0 12 2 1 14 14 10 10 18 11 21 1 0 4 32 30 47 2 0 13 2 1 37 0 1 23 7 0 10 5 11 12 15 10 154 20 19 13 1 0 130 2 1 158 4 0 148 2 0 295 chain 25281 chr18 78077248 + 1729226 1729557 LTR17 781 - 455 781 103312 89 1 0 81 1 0 23 6 4 70 1 0 59 chain 90139 chr18 78077248 + 1733276 1734294 L1PA3long 6157 - 0 1007 39598 5 2 0 749 10 1 252 chain 20946 chr18 78077248 + 1739587 1739885 MER4D1 891 - 593 891 124131 35 2 0 51 2 3 87 9 10 112 chain 3084 chr18 78077248 + 1740413 1740446 MER41B 635 - 88 121 223261 33 chain 43318 chr18 78077248 + 1756293 1756780 L1PA4 6152 - 702 1193 65015 148 0 4 339 chain 61861 chr18 78077248 + 1756780 1757470 L1PA4 6152 + 5453 6143 51968 690 chain 4703 chr18 78077248 + 1764816 1764882 MER92B 628 + 83 149 198496 4 0 1 56 1 0 5 chain 127942 chr18 78077248 + 1768720 1770133 L1PA4 6152 + 4735 6151 28585 563 0 4 741 1 0 108 chain 29344 chr18 78077248 + 1775608 1775979 THE1B 368 - 0 368 87321 176 2 0 18 1 0 174 chain 60883 chr18 78077248 + 1782325 1783001 L1PA5 6144 - 4 679 52395 255 1 0 420 chain 471997 chr18 78077248 + 1784137 1790587 L1PA8A 6298 + 258 6291 7971 7 1 0 48 1 0 15 8 2 77 2 0 19 19 16 237 1 0 101 11 20 125 8 9 53 1 0 82 0 2 40 2 5 25 2 0 89 1 0 32 0 3 26 3 4 575 473 0 12 1 14 454 2 1 154 1 2 341 3 4 113 0 4 132 6 9 171 9 10 82 20 19 55 1 4 253 0 1 166 0 1 390 4 15 267 0 4 147 0 1 382 1 0 135 0 16 255 2 0 104 3 2 404 0 1 296 chain 38107 chr18 78077248 + 1785753 1786221 LTR7C 471 - 0 471 71972 16 5 6 100 0 1 38 0 1 309 chain 4111 chr18 78077248 + 1811967 1812035 L1MC3 1789 - 1546 1610 205758 46 9 5 13 chain 46717 chr18 78077248 + 1844283 1844822 L1PA7 6471 - 14 553 61441 141 2 0 5 1 3 390 chain 31191 chr18 78077248 + 1854962 1855370 MLT2A1 477 - 60 455 82178 7 8 0 25 4 0 180 0 1 24 0 1 9 5 2 146 chain 450463 chr18 78077248 + 1855392 1860971 HERVL-int 5654 - 0 5654 8753 48 0 4 147 1 2 80 6 9 139 1 0 254 6 2 170 0 1 23 6 12 678 1 0 4 4 29 195 0 1 125 3 0 169 0 8 45 22 8 186 2 0 84 1 3 182 0 1 46 4 0 226 1 0 535 0 1 555 0 1 104 0 2 270 0 33 38 0 1 20 0 2 472 0 4 381 0 8 233 10 11 102 chain 34087 chr18 78077248 + 1860971 1861468 MLT2A1 477 - 0 477 77488 25 15 25 12 18 0 8 12 0 203 0 2 22 0 1 10 5 2 167 chain 50658 chr18 78077248 + 1879485 1880232 L1PREC2 3366 - 415 1145 58531 20 2 1 8 4 2 32 57 45 37 1 0 54 2 0 477 0 1 53 chain 66191 chr18 78077248 + 1885164 1885901 L1PA4 6152 + 5408 6146 50006 593 1 2 143 chain 44835 chr18 78077248 + 1903011 1903524 MER9a3 513 - 0 513 63250 513 chain 55833 chr18 78077248 + 1910886 1911573 L1P1 4361 + 4 691 55174 687 chain 135654 chr18 78077248 + 1911573 1913094 L1PA5 6144 + 4607 6144 26902 439 0 14 287 1 0 634 0 3 160 chain 59416 chr18 78077248 + 1919908 1920658 MER4E 760 - 0 760 53161 75 0 2 142 0 3 304 0 1 67 12 15 28 0 1 84 1 0 5 0 1 32 chain 54955 chr18 78077248 + 1942073 1942825 MER4E 760 - 7 760 55735 15 0 2 302 1 0 62 3 5 94 12 16 18 1 0 68 2 1 121 16 11 14 0 1 23 chain 8764 chr18 78077248 + 1942833 1942948 MSTB-int 1649 + 1521 1636 166848 16 1 0 70 0 1 28 chain 38852 chr18 78077248 + 1949964 1950425 L1PA7 6471 - 3 464 70944 10 2 1 325 0 1 124 chain 3950 chr18 78077248 + 1954298 1954345 MER52D 1964 - 816 863 208136 47 chain 18517 chr18 78077248 + 1991931 1992260 THE1C 375 + 0 336 131452 105 1 2 79 11 13 27 61 65 45 chain 76171 chr18 78077248 + 2000814 2001782 LTR5_Hs 974 - 0 974 45382 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 27464 chr18 78077248 + 2032988 2033280 AluYa5 310 - 18 310 94766 292 chain 5633 chr18 78077248 + 2078456 2078522 MER4C 627 - 1 67 188740 66 chain 14822 chr18 78077248 + 2087626 2087962 THE1A 353 + 0 329 141878 102 110 112 5 1 0 66 1 2 17 9 0 25 chain 36052 chr18 78077248 + 2091932 2092408 MER4A1 472 + 0 472 74831 200 30 26 246 chain 9600 chr18 78077248 + 2158041 2158159 L1PA7 6471 + 6351 6469 162594 118 chain 55367 chr18 78077248 + 2162187 2162916 MER4E1 777 + 0 769 55479 23 0 2 69 2 1 154 1 0 65 15 34 67 0 1 17 0 1 107 1 9 132 0 11 76 chain 33643 chr18 78077248 + 2166911 2167379 MER9a3 513 + 0 492 78181 22 0 1 103 4 3 4 0 1 13 1 2 30 0 1 73 6 5 51 13 34 91 0 1 57 chain 3335 chr18 78077248 + 2191357 2191394 MER58A 224 - 138 175 218327 37 chain 20099 chr18 78077248 + 2210333 2210561 L1PA4 6152 + 5924 6151 126831 72 1 0 155 chain 25440 chr18 78077248 + 2216137 2216589 THE1C 375 + 0 375 102495 80 5 6 89 0 2 8 23 21 113 77 0 30 1 0 26 chain 2997 chr18 78077248 + 2222577 2222611 MLT2B2 565 - 528 562 225100 34 chain 80986 chr18 78077248 + 2230198 2231202 LTR13 1007 - 0 1004 43199 296 28 28 54 2 1 238 8 9 378 chain 84648 chr18 78077248 + 2244661 2247151 L1PB1 5432 + 12 2519 10443 7 1 0 32 4 3 350 9 2 196 1 0 160 0 1 49 23 24 304 0 1 202 0 1 51 2 0 8 5 0 23 7 24 100 1 0 4 0 2 6 0 1 40 0 1 26 2 3 12 6 7 197 0 3 523 0 4 118 1 2 20 chain 551272 chr18 78077248 + 2247167 2253196 L1PA2 6032 + 0 6028 1276 74 0 1 180 2 1 270 4 0 2523 1 0 451 0 4 372 0 3 159 0 1 504 1 0 1323 4 1 161 chain 98348 chr18 78077248 + 2253249 2256142 L1PB1 5432 + 2519 5424 10443 63 0 3 135 2 0 122 1 0 390 4 5 754 0 1 341 0 1 93 0 1 42 12 29 121 0 1 5 3 0 87 0 1 35 0 10 8 0 1 25 10 13 135 0 11 151 1 2 9 1 0 20 1 0 12 1 0 12 5 1 8 2 0 53 7 6 11 1 0 39 35 21 30 12 9 10 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 287902 chr18 78077248 + 2287953 2291894 L1PB1 5432 - 19 4151 14165 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 27 11 0 4 1 0 12 14 13 34 22 20 50 2 0 9 16 11 9 1 0 24 3 0 6 14 9 46 2 1 5 0 1 289 1 2 41 2 3 79 7 5 7 1 0 232 0 1 27 0 16 375 1 0 232 0 1 7 19 0 340 2 1 281 0 4 54 4 5 524 5 6 105 5 10 94 0 1 124 6 237 227 0 1 109 0 5 198 15 0 29 0 1 57 1 0 35 chain 25387 chr18 78077248 + 2316890 2317293 MER50 708 + 68 682 102752 37 0 1 123 15 212 22 7 13 4 1 0 11 23 24 87 2 9 71 chain 311259 chr18 78077248 + 2343139 2346592 L1PA4 6152 + 2679 6138 12953 1032 0 1 1450 0 1 141 0 4 830 chain 34183 chr18 78077248 + 2359467 2359899 MER57A1 433 + 0 433 77373 122 0 1 157 3 4 83 1 0 66 chain 272359 chr18 78077248 + 2371798 2375653 L1PB1 5432 - 28 3840 15057 12 1 0 22 1 0 24 71 54 11 1 0 44 1 0 12 7 6 51 2 0 6 9 5 13 9 6 22 7 0 8 0 5 121 13 8 183 0 1 82 2 0 82 2 0 151 0 4 8 0 4 453 1 0 8 11 8 34 1 0 171 1 0 6 14 15 28 3 0 170 31 32 343 0 1 161 0 1 68 1 0 118 1 0 339 0 2 123 0 4 337 8 1 201 2 1 85 8 9 16 4 1 95 9 10 26 chain 19208 chr18 78077248 + 2378352 2378566 L1PA2 6032 + 5818 6032 129510 214 chain 52560 chr18 78077248 + 2399509 2400130 L1PA6 6164 + 5538 6161 57261 273 0 1 203 3 4 142 chain 6752 chr18 78077248 + 2405787 2405928 LTR16B2 458 - 38 186 179312 55 4 0 7 1 0 4 35 47 35 chain 3129 chr18 78077248 + 2411563 2411596 MLT2D 439 + 406 439 222371 33 chain 52121 chr18 78077248 + 2426672 2427252 L1PA3long 6157 + 5561 6142 57547 37 0 1 543 chain 5799 chr18 78077248 + 2445675 2445742 MER34A 573 + 9 76 187158 67 chain 16354 chr18 78077248 + 2447709 2447950 MER39B 650 - 131 650 137325 16 1 2 124 1 266 53 1 13 45 chain 22728 chr18 78077248 + 2459362 2459654 AluSp 311 + 22 309 116935 114 6 10 98 9 0 65 chain 7146 chr18 78077248 + 2477759 2477843 L1MCa 1829 - 683 767 176438 84 chain 12169 chr18 78077248 + 2482101 2482231 AluY 311 + 2 132 151540 130 chain 14688 chr18 78077248 + 2490491 2490672 L1PA3long 6157 + 5978 6157 142298 36 0 1 137 3 0 5 chain 3777 chr18 78077248 + 2553652 2553697 L1MC4a 1092 - 681 726 210710 45 chain 86931 chr18 78077248 + 2596235 2597184 L1PA3long 6157 + 5207 6157 40813 800 0 1 149 chain 16662 chr18 78077248 + 2626758 2627030 L1PA16 3655 + 3373 3619 136504 151 0 1 53 52 25 16 chain 21747 chr18 78077248 + 2627652 2628009 Tigger3b 1229 + 883 1198 121219 59 2 0 50 13 15 107 49 6 6 0 1 71 chain 22695 chr18 78077248 + 2630683 2630948 AluSc 308 + 16 281 117099 265 chain 28169 chr18 78077248 + 2632018 2632373 THE1A 353 + 0 353 92402 91 1 0 18 2 1 243 chain 128534 chr18 78077248 + 2632373 2633967 THE1A-int 1579 + 0 1574 28441 670 21 21 29 0 1 190 22 0 367 8 9 287 chain 28281 chr18 78077248 + 2633972 2634328 THE1A 353 + 0 353 91999 108 5 2 243 chain 25802 chr18 78077248 + 2638107 2638397 AluY 311 + 2 294 100857 129 0 2 161 chain 5783 chr18 78077248 + 2638573 2638790 L1MC1 2226 - 44 234 187336 24 79 64 11 5 0 14 28 22 48 1 0 7 chain 21364 chr18 78077248 + 2646391 2646661 AluSc 308 + 15 282 122635 96 5 1 18 0 1 151 chain 5696 chr18 78077248 + 2649800 2649866 U6 107 - 41 107 188143 66 chain 33048 chr18 78077248 + 2660881 2661337 L1PA8 5853 + 5398 5847 79144 166 1 0 44 2 0 70 22 20 42 2 1 19 2 1 86 chain 28346 chr18 78077248 + 2661873 2662182 AluYb8 318 + 0 306 91779 109 1 0 14 2 0 183 chain 26387 chr18 78077248 + 2685092 2685388 AluYk4 311 - 6 303 98463 30 0 1 266 chain 28884 chr18 78077248 + 2711479 2711779 AluYa5 310 - 10 310 89517 300 chain 34598 chr18 78077248 + 2739931 2740348 L1PA7 6471 - 2 416 76758 10 3 0 119 1 0 23 4 5 257 chain 10065 chr18 78077248 + 2806022 2806143 LTR43 600 - 60 181 160249 121 chain 8608 chr18 78077248 + 2806662 2806772 L1PA16 3655 + 3466 3578 167686 15 0 2 95 chain 23584 chr18 78077248 + 2808382 2808744 THE1B 368 - 12 368 112669 52 0 2 9 1 0 100 31 24 52 10 11 58 0 1 33 2 0 14 chain 21498 chr18 78077248 + 2808744 2809010 THE1B-int 1605 - 0 267 122155 105 0 1 161 chain 22913 chr18 78077248 + 2810640 2811014 THE1B 368 - 2 368 116046 73 1 0 100 31 24 34 26 27 60 0 1 34 3 1 12 chain 3241 chr18 78077248 + 2817565 2817703 L1M4c 1769 + 1584 1735 220207 21 11 16 17 18 25 11 32 34 23 1 0 4 chain 4066 chr18 78077248 + 2822323 2822370 ERVL-B4-int 2334 - 1079 1126 206394 47 chain 28803 chr18 78077248 + 2832591 2833270 MLT2A1 477 - 95 477 89889 204 7 13 22 0 1 45 304 0 97 chain 480727 chr18 78077248 + 2833270 2838895 HERVL-int 5654 - 0 5654 7700 219 0 1 165 0 1 41 0 1 5 1 0 318 1 4 133 3 9 1438 0 1 913 0 1 234 0 1 428 0 4 158 1 5 258 1 6 466 0 2 842 chain 31509 chr18 78077248 + 2838895 2839313 MLT2A1 477 - 0 477 81628 36 0 1 4 0 53 20 9 8 32 1 0 145 7 13 24 0 1 140 chain 25275 chr18 78077248 + 2839332 2839999 MER50 708 + 300 680 103347 58 9 8 83 1 0 33 1 0 61 0 5 20 312 23 89 chain 35647 chr18 78077248 + 2858174 2860228 L1PB1 5432 - 5 1616 20430 5 2 0 18 1 0 13 1 0 21 1 0 23 3 1 12 46 32 6 2 0 15 1 0 44 1 0 16 0 1 52 2 0 9 6 2 10 1 0 9 1 0 24 420 11 296 4 3 186 3 0 654 0 2 146 chain 534901 chr18 78077248 + 2860249 2866335 L1PA4 6152 - 13 6146 3606 717 0 1 96 0 1 23 1 0 15 0 4 224 0 1 1116 0 1 66 0 13 179 1 0 428 0 3 70 1 0 1373 0 4 769 0 1 9 0 2 73 0 4 615 0 3 6 18 16 150 0 14 136 chain 44099 chr18 78077248 + 2866341 2868882 L1PB1 5432 - 1616 2602 20430 79 0 1 79 21 6 81 0 1 92 0 2 41 3 1 316 0 1 31 4 5 182 1542 0 56 2 0 12 chain 119516 chr18 78077248 + 2867370 2868789 SVA_D 2077 - 21 2021 31210 613 0 535 71 5 8 20 41 1 45 0 40 84 0 40 209 8 11 323 chain 25562 chr18 78077248 + 2876484 2876769 AluY 311 + 2 288 101921 130 0 1 155 chain 3458 chr18 78077248 + 2957455 2957494 Tigger4a 237 + 198 237 216029 39 chain 21078 chr18 78077248 + 3013895 3014167 AluSz 310 + 10 283 123626 101 1 0 22 3 2 124 1 2 6 0 2 14 chain 26506 chr18 78077248 + 3023340 3023763 LTR7B 505 - 0 505 98019 51 14 13 89 0 41 21 3 1 32 6 28 21 31 44 49 0 10 48 1 0 57 chain 38331 chr18 78077248 + 3023784 3024210 L1PA5 6144 + 5702 6130 71681 292 0 2 134 chain 57392 chr18 78077248 + 3049787 3050432 SVA_B 1603 + 921 1603 54292 32 9 49 595 3 0 6 chain 25143 chr18 78077248 + 3064554 3064849 AluSp 311 - 7 300 104041 15 2 0 278 chain 15251 chr18 78077248 + 3081928 3082189 MER1B 344 - 5 275 140627 54 48 54 6 0 7 130 12 8 11 chain 5010 chr18 78077248 + 3093565 3093622 U7 62 + 0 57 195016 57 chain 22778 chr18 78077248 + 3132163 3132437 AluSg7 307 - 23 297 116689 152 1 0 61 0 1 60 chain 13544 chr18 78077248 + 3182274 3182428 L1PA5 6144 + 5975 6130 146194 26 0 1 128 chain 26341 chr18 78077248 + 3182911 3183226 AluSp 311 - 0 311 98648 58 4 0 253 chain 22594 chr18 78077248 + 3224685 3224962 AluSg7 307 - 32 307 117610 151 3 1 123 chain 14470 chr18 78077248 + 3227250 3227500 L1MB3 1562 + 1224 1451 142984 127 1 0 50 3 0 5 46 27 18 chain 3959 chr18 78077248 + 3230560 3230624 MER51A 677 + 176 231 208000 23 9 0 32 chain 21629 chr18 78077248 + 3240289 3240621 THE1B 368 + 0 356 121661 40 0 15 120 1 0 17 42 52 112 chain 22395 chr18 78077248 + 3242217 3242847 THE1B 368 + 13 367 118511 26 1 16 120 1 0 21 1 0 4 0 9 4 0 1 18 4 12 82 307 0 41 chain 13245 chr18 78077248 + 3250076 3250222 L1PA4 6152 + 5996 6146 147303 100 0 4 46 chain 8321 chr18 78077248 + 3267807 3267945 MER2 342 - 27 164 169274 15 23 22 100 chain 3029 chr18 78077248 + 3270510 3270542 LTR16B2 458 + 374 406 224417 32 chain 52805 chr18 78077248 + 3288127 3289869 L1MA3 4352 - 899 1991 57130 72 1 0 109 0 4 369 1017 369 18 5 0 151 chain 138901 chr18 78077248 + 3299190 3303955 L1PB3 3668 + 6 3566 26329 12 6 4 32 2 0 10 13 8 4 1 0 24 13 6 19 1 0 5 1 0 7 3 0 747 1 3 79 0 2 4 0 1 237 2132 1513 35 47 9 129 0 5 87 2 0 14 1 0 4 3 0 78 1 2 183 1 2 18 520 8 94 1 0 9 1 2 76 20 4 18 1 0 3 1 0 25 9 7 31 chain 33248 chr18 78077248 + 3315176 3315600 L1PA8 5853 - 0 417 78804 93 1 0 19 2 1 51 1 0 10 2 1 70 2 0 46 1 0 126 chain 70136 chr18 78077248 + 3315600 3316663 Tigger1 2417 - 207 1180 48334 232 3 0 169 0 1 158 97 4 111 46 51 184 0 1 4 1 0 58 chain 19483 chr18 78077248 + 3333513 3333862 THE1B 368 - 6 359 128708 50 7 6 48 0 2 12 8 16 14 40 36 8 2 0 47 5 3 6 0 3 102 chain 2857 chr18 78077248 + 3339025 3339057 MER31-int 1156 + 187 219 227717 32 chain 14637 chr18 78077248 + 3373271 3373670 MSTB 430 - 12 430 142463 4 1 0 74 118 129 15 9 13 16 0 3 23 47 49 92 chain 25246 chr18 78077248 + 3377390 3377680 AluSp 311 - 10 300 103496 290 chain 21578 chr18 78077248 + 3378600 3378894 AluY 311 + 12 300 121850 6 0 3 31 8 5 64 5 0 125 6 5 49 chain 12517 chr18 78077248 + 3383024 3383166 L1PA4 6152 - 12 154 150171 142 chain 25433 chr18 78077248 + 3432746 3433056 AluSp 311 - 6 311 102529 12 5 0 293 chain 4368 chr18 78077248 + 3472405 3472489 MER45B 1037 - 391 484 202352 22 17 19 16 0 7 29 chain 15046 chr18 78077248 + 3476497 3476767 THE1B 368 - 62 341 141190 65 64 72 52 8 9 81 chain 10587 chr18 78077248 + 3477305 3477435 Tigger1 2417 + 1951 2081 157887 130 chain 4518 chr18 78077248 + 3513172 3513232 L1MB1 2102 - 147 205 200574 13 2 0 45 chain 10134 chr18 78077248 + 3515038 3515184 Tigger1 2417 - 322 468 159929 15 0 1 67 13 12 51 chain 10049 chr18 78077248 + 3519899 3520042 L1PA8 5853 + 5712 5853 160323 28 2 1 19 2 1 92 chain 3957 chr18 78077248 + 3524329 3524386 L1MB1 2102 + 1899 1954 208017 43 2 0 12 chain 5046 chr18 78077248 + 3549819 3549881 MLT1B 390 + 27 89 194668 62 chain 32961 chr18 78077248 + 3558926 3559370 MER75 514 + 63 514 79275 22 4 5 49 0 1 143 0 1 5 1 2 197 1 4 22 chain 4236 chr18 78077248 + 3560068 3560125 L1MCa 1829 - 175 229 204082 17 3 0 37 chain 4877 chr18 78077248 + 3560606 3560674 MER75B 242 + 173 242 196530 43 2 3 23 chain 24875 chr18 78077248 + 3578358 3578652 AluSc 308 - 14 308 105485 294 chain 22635 chr18 78077248 + 3579216 3579493 AluSp 311 - 20 297 117401 277 chain 3729 chr18 78077248 + 3642272 3642316 Tigger4a 237 + 3 47 211491 44 chain 22525 chr18 78077248 + 3650800 3651075 AluSc5 308 + 14 290 117915 104 0 1 171 chain 531953 chr18 78077248 + 3693883 3700582 L1PA7 6471 - 3 6471 3964 15 2 1 133 1 0 7 6 0 345 0 1 61 3 6 275 0 3 116 0 2 72 324 0 656 0 3 100 0 4 830 4 5 252 0 1 27 0 4 52 3 0 44 0 5 344 0 4 113 7 6 38 8 11 482 0 1 188 1 0 213 0 45 787 3 8 51 0 1 47 0 4 399 3 17 283 0 3 41 1 0 362 chain 279072 chr18 78077248 + 3736731 3739781 L1PA3long 6157 + 3104 6152 14688 573 2 0 2475 chain 7685 chr18 78077248 + 3752809 3752980 L1MB8 1703 - 212 382 173008 56 51 51 34 5 4 25 chain 9861 chr18 78077248 + 3786128 3786253 MLT1D 503 - 367 493 161278 117 0 1 8 chain 8572 chr18 78077248 + 3814675 3814830 L1MA3 4352 - 24 172 167896 13 1 0 27 1 0 6 1 0 24 2 0 21 5 1 28 4 6 22 chain 7721 chr18 78077248 + 3893129 3893224 L1PB4 2604 - 88 183 172776 95 chain 5852 chr18 78077248 + 3894698 3894765 U6 107 - 0 67 186661 67 chain 29779 chr18 78077248 + 3897778 3898093 AluYb8 318 - 3 318 85544 315 chain 3692 chr18 78077248 + 3898144 3898192 Tigger4a 237 + 0 48 212055 48 chain 12137 chr18 78077248 + 3945660 3945795 L1PA2 6032 + 5897 6032 151663 135 chain 11575 chr18 78077248 + 3948620 3948909 L1PB1 5432 + 5134 5422 154008 13 1 0 9 2 0 3 2 0 9 7 5 34 12 29 19 1 10 16 1 0 15 2 0 6 16 6 13 8 6 4 1 0 15 2 0 24 1 0 8 0 1 12 1 0 13 1 0 18 chain 57227 chr18 78077248 + 3987885 3988710 Charlie3 2679 - 0 2662 54385 63 6 8 5 2 0 48 0 3 125 5 10 54 0 66 67 9 1756 401 18 35 4 1 0 17 chain 89026 chr18 78077248 + 3989643 3990628 L1PA4 6152 + 5150 6136 39990 78 1 2 662 1 0 109 0 1 134 chain 26205 chr18 78077248 + 4034934 4035226 L1PA6 6164 - 254 546 99181 292 chain 9745 chr18 78077248 + 4045472 4045597 AluJb 308 + 156 278 161867 82 3 0 40 chain 25543 chr18 78077248 + 4051252 4051627 THE1C 375 - 0 375 102032 7 0 1 17 1 0 142 11 16 6 6 0 69 1 0 47 4 6 64 chain 4135 chr18 78077248 + 4052991 4053036 THE1C-int 1605 - 1450 1495 205442 45 chain 8697 chr18 78077248 + 4053545 4053808 MSTA 426 + 159 426 167213 25 15 62 12 93 64 61 15 1 42 chain 12315 chr18 78077248 + 4064265 4067553 MER4D1 891 + 7 238 150961 91 3056 6 11 7 0 123 chain 3658 chr18 78077248 + 4070379 4070420 tRNA-Gln-CAG 43 - 0 41 212610 41 chain 38879 chr18 78077248 + 4087222 4087701 MER9a3 513 + 0 513 70900 18 0 2 87 4 14 58 0 1 138 0 21 174 chain 68132 chr18 78077248 + 4088694 4089518 L1PA10 4194 + 3330 4150 49190 66 2 0 646 0 1 73 3 0 34 chain 20178 chr18 78077248 + 4135872 4136113 L1PA5 6144 - 2 245 126597 145 0 1 23 0 1 73 chain 35017 chr18 78077248 + 4136910 4137295 L1PA4 6152 - 9 394 76164 385 chain 29303 chr18 78077248 + 4141657 4142089 L1M1 2793 - 1525 1947 87555 13 8 4 66 6 5 65 1 0 112 1 0 102 11 8 47 chain 12747 chr18 78077248 + 4147978 4148169 MER107 203 + 0 184 149269 60 6 4 102 3 1 12 3 0 5 chain 11727 chr18 78077248 + 4151836 4151975 L1PA8 5853 + 5716 5853 153358 28 1 0 16 1 0 93 chain 115388 chr18 78077248 + 4174666 4176174 L1PA8A 6298 - 7 1712 32649 94 5 10 28 2 0 81 1 2 68 0 2 63 0 187 187 14 17 61 0 2 508 23 14 355 1 9 17 chain 8260 chr18 78077248 + 4177767 4177950 L1PA15 4387 - 30 197 169626 25 41 34 28 7 3 50 1 0 10 4 0 17 chain 37068 chr18 78077248 + 4188317 4188809 L1PA8 5853 - 1 491 73433 58 2 1 33 1 0 6 0 6 6 3 2 48 1 0 7 1 0 77 2 0 44 1 0 202 chain 25917 chr18 78077248 + 4216009 4216384 THE1C 375 - 0 375 100348 25 1 0 74 0 1 53 0 3 24 14 13 93 5 1 51 0 2 35 chain 9973 chr18 78077248 + 4220925 4221079 Tigger3a 397 + 143 303 160713 118 22 28 14 chain 3207 chr18 78077248 + 4241314 4241349 MER5A 189 - 121 156 220772 35 chain 49948 chr18 78077248 + 4287198 4287849 L1PA8 5853 + 5126 5853 59057 28 1 17 4 1 0 58 0 46 180 3 15 88 1 0 46 2 0 40 0 10 21 1 0 9 2 1 51 2 1 19 1 0 93 chain 12690 chr18 78077248 + 4288066 4288204 L1PA2 6032 - 4 142 149485 138 chain 32212 chr18 78077248 + 4298414 4298783 L1PA2 6032 + 5660 6031 80498 352 2 4 15 chain 22032 chr18 78077248 + 4336866 4337142 AluY 311 + 48 311 120098 78 13 0 185 chain 16649 chr18 78077248 + 4343617 4343800 L1PA7 6471 + 6278 6461 136532 183 chain 86368 chr18 78077248 + 4363481 4364415 L1PA3long 6157 + 5222 6156 41010 934 chain 34943 chr18 78077248 + 4364596 4365050 L1PREC2 3366 - 2074 2528 76273 397 1 0 4 1 2 51 chain 12948 chr18 78077248 + 4419195 4419361 THE1B 368 - 199 368 148440 127 0 5 23 2 0 14 chain 28482 chr18 78077248 + 4445298 4445608 L1PA2 6032 - 2 312 91253 310 chain 3819 chr18 78077248 + 4457315 4457393 L1MA4 2864 - 33 106 210098 13 17 9 41 0 3 7 chain 478893 chr18 78077248 + 4472145 4477324 L1PA2 6032 - 2 5181 7769 5179 chain 77340 chr18 78077248 + 4477329 4478177 L1HS 6032 + 2 851 44809 362 0 1 486 chain 139276 chr18 78077248 + 4525230 4527617 L1MA2 4263 - 150 2196 26253 9 1 0 33 18 13 92 1 0 8 1 0 125 44 41 5 0 1 4 1 0 120 1 0 27 0 1 48 43 49 377 2 1 255 6 9 60 317 0 138 11 7 32 7 9 5 3 0 105 1 0 101 10 12 122 23 8 60 4 2 167 chain 50138 chr18 78077248 + 4527618 4528204 LTR14C 587 - 0 585 58913 411 1 0 174 chain 30822 chr18 78077248 + 4538338 4538743 MSTA 426 + 1 408 82830 27 0 1 100 4 3 76 2 0 64 0 4 132 chain 13170 chr18 78077248 + 4545271 4545434 MER6A 605 + 408 571 147581 163 chain 70330 chr18 78077248 + 4559978 4560898 L1PA8 5853 - 0 914 48251 93 1 0 19 2 1 50 1 2 9 3 2 62 7 5 46 1 0 554 2 0 9 1 2 60 chain 54857 chr18 78077248 + 4560899 4561599 L1P3 4156 + 2873 3575 55795 336 0 1 59 4 6 20 2 0 230 0 1 49 chain 87296 chr18 78077248 + 4583769 4584796 L1PA7 6471 + 5427 6459 40645 18 0 1 176 0 2 795 3 5 35 chain 124186 chr18 78077248 + 4615851 4617267 L1PA5 6144 - 3 1428 29632 135 7 0 10 0 7 694 1 5 18 0 3 367 0 2 184 chain 362224 chr18 78077248 + 4620351 4625653 L1PB1 5432 - 392 5421 11315 21 1 5 11 0 1 362 0 1 8 0 2 228 3 4 7 0 1 93 317 1 330 0 3 6 11 9 222 7 5 31 8 0 76 0 2 107 26 26 71 6 5 117 0 1 349 0 4 276 33 70 35 1 0 94 6 10 149 9 5 221 0 1 333 0 1 117 1 0 25 12 0 8 1 15 159 16 20 394 19 20 129 3 1 22 0 1 56 3 1 177 0 4 16 1 0 4 6 7 15 3 1 138 2 1 266 1 2 101 1 0 12 6 0 13 chain 187763 chr18 78077248 + 4649240 4651341 L1P1 4361 - 33 2132 20264 23 1 0 155 1 0 1921 chain 19468 chr18 78077248 + 4661612 4661936 MSTA 426 + 0 408 128758 40 2 1 58 33 59 48 6 45 45 1 21 91 chain 59828 chr18 78077248 + 4681679 4682430 LTR17 781 + 0 781 52915 25 0 1 95 0 9 35 4 11 132 10 0 19 0 1 381 4 26 46 chain 238484 chr18 78077248 + 4683922 4686668 L1PA5 6144 + 3390 6144 16852 74 1 2 574 1 2 614 0 2 211 1 0 344 0 3 486 1 3 439 chain 10587 chr18 78077248 + 4686892 4687066 HERV17-int 4347 + 12 181 157888 14 2 1 48 9 8 29 2 0 19 9 8 42 chain 375894 chr18 78077248 + 4687076 4691411 HERV17-int 4347 + 13 4347 10890 14 1 0 51 1 0 36 2 0 25 1 0 126 0 2 222 1 0 4 0 1 155 6 7 820 0 1 1670 1 0 1018 0 1 181 chain 56231 chr18 78077248 + 4691724 4692409 LTR17 781 + 0 781 55006 119 0 9 130 0 89 52 4 1 373 0 1 7 chain 50569 chr18 78077248 + 4692423 4694665 L1PB1 5432 + 2384 4586 18529 32 0 10 67 3 0 8 1 0 339 1 0 38 2 6 837 0 3 237 1 0 59 0 1 86 53 1 478 chain 506199 chr18 78077248 + 4694737 4700808 L1PA5 6144 + 0 6141 6451 120 0 14 77 9 58 196 0 4 599 21 14 87 9 0 50 1 0 549 0 13 529 7 0 40 13 0 23 3 31 271 0 1 198 4 0 800 2 1 365 1 2 458 0 2 449 1 0 893 0 1 296 chain 20322 chr18 78077248 + 4700808 4701709 L1PB1 5432 + 4644 5420 18529 91 1 0 62 2 1 195 12 11 95 95 4 11 1 0 20 1 0 13 1 0 11 15 9 53 2 1 16 1 0 44 39 27 19 3 1 4 1 0 14 2 0 27 1 0 18 1 0 13 1 0 16 chain 34053 chr18 78077248 + 4724870 4725304 MER4A1 472 + 2 440 77536 27 0 1 70 0 2 116 1 2 220 chain 119498 chr18 78077248 + 4742287 4743940 L1PB2 3958 + 2207 3838 31218 74 21 24 179 0 1 7 5 0 432 1 0 280 2 1 104 2 0 52 1 0 16 3 0 62 18 12 89 5 0 77 1 0 62 1 0 67 0 1 28 1 0 63 chain 52569 chr18 78077248 + 4752875 4753559 LTR12_ 688 - 0 688 57254 61 15 14 128 6 8 228 1 2 109 0 2 136 chain 101585 chr18 78077248 + 4753767 4754902 L1PA4 6152 - 14 1142 36371 162 8 0 411 0 1 554 chain 6067 chr18 78077248 + 4754916 4754986 MER30B 195 + 125 195 184688 70 chain 53212 chr18 78077248 + 4765730 4766429 L1PA8 5853 - 0 691 56886 89 5 4 17 1 0 53 25 23 58 2 0 47 1 0 208 1 0 192 chain 27851 chr18 78077248 + 4766618 4766926 L1PA4 6152 + 5844 6151 93517 158 1 0 149 chain 11751 chr18 78077248 + 4770527 4770781 MLT1A0 366 - 17 254 153258 20 5 0 85 86 68 6 0 6 52 chain 8589 chr18 78077248 + 4784894 4785402 L1MA9 1812 + 1254 1705 167793 40 72 70 26 1 0 25 3 0 6 1 0 24 93 80 14 175 138 28 chain 39045 chr18 78077248 + 4815719 4816352 LTR12_ 688 + 0 688 70670 267 0 2 159 146 199 61 chain 4102 chr18 78077248 + 4822560 4822687 MER4D1 891 - 0 140 205919 22 2 4 4 1 0 30 22 34 13 19 19 14 chain 54045 chr18 78077248 + 4844397 4845473 MER4E 760 + 0 760 56330 23 0 1 92 2 0 35 11 29 40 0 2 31 0 1 7 6 7 260 3 0 5 2 1 25 333 0 201 chain 24961 chr18 78077248 + 4872715 4873011 L1PA6 6164 - 8 303 104998 145 1 0 150 chain 36975 chr18 78077248 + 4879927 4880340 L1PA5 6144 - 1582 1999 73545 65 0 4 348 chain 138829 chr18 78077248 + 4880340 4881913 L1PA5 6144 + 4570 6144 26343 512 0 2 212 0 3 839 4 0 6 chain 357369 chr18 78077248 + 4882090 4886650 L1PA6 6164 - 3 6164 11421 763 0 1571 90 9 10 106 1 0 443 7 6 149 0 9 96 1 6 320 7 11 302 2 4 6 2 0 9 2 1 429 1 0 179 6 11 679 0 1 141 1 18 232 6 5 92 31 23 288 26 27 134 chain 512430 chr18 78077248 + 4892799 4898716 L1PA5 6144 + 4 6137 5930 751 14 220 1033 1 2 1355 0 2 512 2 1 491 0 1 710 0 2 206 1 0 414 5 11 422 chain 105888 chr18 78077248 + 4916108 4918459 THE1B-int 1605 - 16 1603 35285 385 2 3 107 0 180 232 1 0 218 7 32 160 7 13 44 975 0 213 chain 75474 chr18 78077248 + 4917277 4918246 LTR5_Hs 974 - 0 974 45782 103 20 18 19 8 15 163 1 0 126 1 0 62 0 1 177 0 1 289 chain 7032 chr18 78077248 + 4953899 4954001 L1PB 1623 - 686 789 177238 57 4 5 41 chain 9684 chr18 78077248 + 4957644 4957748 L1PB1 5432 + 3816 3920 162176 104 chain 116309 chr18 78077248 + 4974203 4975767 THE1A-int 1579 - 16 1579 32342 416 6 5 58 8 12 122 0 1 5 32 23 249 15 17 4 0 1 339 4 5 306 chain 18192 chr18 78077248 + 4975769 4976106 THE1A 353 - 2 353 132351 184 1 0 5 77 80 34 1 15 20 3 1 12 chain 14095 chr18 78077248 + 4981887 4982065 L1PA10 4194 + 1456 1634 144238 178 chain 14772 chr18 78077248 + 4982065 4982364 L1PB1 5432 + 5138 5420 142021 20 4 0 9 2 0 52 1 0 18 1 0 38 6 5 14 16 15 18 12 9 10 2 0 24 1 0 10 0 1 10 1 0 13 1 0 16 chain 550743 chr18 78077248 + 5004135 5010154 L1PA2 6032 + 0 6031 1347 72 0 1 179 5 4 454 0 7 2433 0 5 2876 chain 54757 chr18 78077248 + 5018537 5019291 LTR12 884 - 23 884 55867 53 1 5 201 0 8 17 14 0 38 0 2 82 13 14 64 2 0 39 0 1 146 0 107 84 chain 5364 chr18 78077248 + 5021829 5021891 LTR43 600 + 192 254 191379 62 chain 3380 chr18 78077248 + 5030693 5030730 MLT2B1 522 - 0 37 217501 37 chain 5747 chr18 78077248 + 5040297 5040413 MER5A1 166 + 47 165 187671 37 1 0 30 25 28 23 chain 25494 chr18 78077248 + 5041765 5042112 THE1A 353 + 1 353 102251 69 0 1 39 1 0 151 8 15 20 2 0 57 chain 42187 chr18 78077248 + 5047538 5048140 LTR12 884 + 2 878 66412 207 0 156 12 2 0 67 44 31 173 0 3 5 11 141 81 chain 22108 chr18 78077248 + 5058025 5058268 L1PA4 6152 + 5908 6151 119745 243 chain 23733 chr18 78077248 + 5064571 5064845 AluY 311 + 28 303 111865 104 0 1 170 chain 29582 chr18 78077248 + 5078047 5078363 AluYb8 318 - 2 318 86261 316 chain 35645 chr18 78077248 + 5082545 5083198 MER41A 554 + 0 554 75345 118 111 17 78 1 4 102 0 13 18 26 4 113 33 34 53 chain 50302 chr18 78077248 + 5085228 5085847 LTR12_ 688 + 0 661 58790 55 0 41 131 0 1 433 chain 244146 chr18 78077248 + 5085949 5089053 HERV9-int 5642 + 0 4824 16552 36 0 1 273 4 5 281 25 24 93 0 4 78 1 0 22 4 5 45 1 0 4 12 13 90 1 0 93 80 0 18 7 6 16 3 4 541 0 1 4 1 0 614 1 0 53 0 1 515 0 1795 177 0 1 11 chain 55008 chr18 78077248 + 5090475 5091190 LTR12 884 + 0 869 55700 55 0 41 113 5 112 19 1 2 39 2 0 39 1 4 383 14 18 44 chain 506901 chr18 78077248 + 5122007 5128134 L1PA6 6164 + 5 6156 6405 390 20 19 22 0 1 12 8 0 118 3 2 56 5 0 6 3 8 148 0 17 648 0 1 129 2 5 738 0 2 199 0 2 663 1 0 145 0 2 365 1 0 665 0 2 1095 0 7 328 1 0 356 chain 17085 chr18 78077248 + 5130954 5131192 L1PB4 2604 + 2166 2406 135362 138 5 9 64 2 0 29 chain 3680 chr18 78077248 + 5154992 5155032 MER72 723 - 526 566 212225 40 chain 73883 chr18 78077248 + 5171273 5172297 L1MA3 4352 + 3162 4198 46569 183 0 1 27 9 8 20 1 2 690 66 78 9 1 0 18 chain 14976 chr18 78077248 + 5179446 5179648 L1PB4 2604 - 232 425 141394 50 9 0 143 chain 118003 chr18 78077248 + 5184308 5186038 L1PA15 4387 + 2636 4356 31801 41 0 1 4 0 4 11 10 7 120 0 1 103 1 0 240 2 0 28 8 7 79 5 4 222 0 1 245 1 0 59 2 0 16 4 0 62 3 1 14 0 1 25 1 0 21 32 35 16 0 1 99 1 0 18 5 18 45 1 0 22 4 0 6 5 4 50 6 3 46 3 1 14 5 0 25 chain 27015 chr18 78077248 + 5211926 5212279 THE1A 353 - 1 353 96234 111 9 8 130 1 0 78 0 1 24 chain 117159 chr18 78077248 + 5227144 5228882 L1PB1 5432 - 9 1693 32069 4 1 0 15 1 0 11 1 0 23 1 0 5 1 0 19 2 0 14 9 6 17 12 4 5 3 0 4 1 0 13 2 1 45 1 0 16 2 1 52 2 0 9 5 1 14 8 6 24 18 16 15 2 1 103 11 9 344 6 0 17 0 4 30 12 10 107 0 1 60 1 0 20 2 1 106 10 3 281 11 7 240 chain 6675 chr18 78077248 + 5242410 5242540 Tigger5 388 + 143 257 179870 32 9 0 16 7 0 10 0 5 29 5 0 22 chain 3335 chr18 78077248 + 5257542 5257588 LTR49 580 + 94 138 218316 9 1 0 29 1 0 6 chain 25975 chr18 78077248 + 5270258 5270623 THE1B 368 - 0 368 100118 195 2 1 21 9 10 96 0 5 18 9 7 15 chain 110719 chr18 78077248 + 5270623 5272107 THE1B-int 1605 - 0 1605 34022 681 2 3 8 0 3 199 60 61 28 3 0 166 11 130 326 chain 28173 chr18 78077248 + 5272107 5272471 THE1B 368 - 0 366 92392 200 1 0 126 0 5 24 2 0 11 chain 139297 chr18 78077248 + 5272471 5274503 L1MA2 4263 + 2091 4114 26248 24 23 31 11 0 1 8 5 7 71 0 1 215 0 2 182 2 0 34 1 0 90 3 0 5 7 9 136 1 0 4 1 0 4 0 2 155 0 15 7 22 7 128 11 12 113 0 4 65 0 1 132 2 0 13 0 3 5 7 0 75 2 1 122 3 4 19 3 0 107 2 0 5 0 1 36 1 0 8 1 0 66 0 2 5 1 0 17 22 9 39 1 0 10 chain 9020 chr18 78077248 + 5279202 5279405 MSTA 426 - 0 238 165488 61 44 68 59 3 0 12 12 26 12 chain 55869 chr18 78077248 + 5281017 5281623 L1PA3long 6157 - 702 1308 55199 606 chain 57858 chr18 78077248 + 5281623 5282262 L1PA3long 6157 + 5479 6149 54058 511 0 30 76 0 1 52 chain 3444 chr18 78077248 + 5305999 5306038 L1MD3 1191 - 228 267 216290 39 chain 10467 chr18 78077248 + 5315788 5315907 L1P1 4361 + 2569 2688 158401 119 chain 165585 chr18 78077248 + 5325433 5327676 L1PA11 4918 + 2235 4504 22573 6 1 0 92 0 1 41 0 2 45 1 2 25 1 2 130 0 8 130 2 0 213 0 1 257 4 15 387 1 2 53 0 1 42 0 1 32 1 2 14 5 12 22 0 1 63 0 1 484 11 6 54 15 14 78 2 0 7 11 10 13 chain 198389 chr18 78077248 + 5332468 5334600 L1HS 6032 - 16 2130 19327 490 18 0 1624 chain 8996 chr18 78077248 + 5338985 5339095 MSTA 426 + 294 408 165622 14 0 4 96 chain 57912 chr18 78077248 + 5345009 5346461 L1PA15 4387 + 73 897 54030 18 17 16 146 1 0 53 1 2 319 31 34 51 631 0 126 2 3 56 chain 60139 chr18 78077248 + 5359019 5359838 L1PA8 5853 - 0 817 52722 93 4 3 16 2 1 45 0 1 4 27 29 52 2 0 18 1 2 25 1 0 258 1 0 197 4 7 5 3 0 61 chain 69394 chr18 78077248 + 5359838 5362229 L1PA8 5853 + 4593 5853 48647 139 19 20 253 0 1 4 1 0 20 1478 351 139 0 1 43 1 0 46 2 0 69 1 0 65 1 0 16 1 0 93 chain 16592 chr18 78077248 + 5361556 5361752 L1PA8 5853 - 472 668 136689 196 chain 14679 chr18 78077248 + 5372641 5372806 L1PA3long 6157 + 5991 6157 142334 16 0 1 149 chain 9236 chr18 78077248 + 5385743 5385848 L1PA5 6144 - 81 186 164372 105 chain 31006 chr18 78077248 + 5389599 5390003 L1PA16 3655 + 2678 3092 82498 78 0 5 140 0 3 18 1 0 151 0 3 16 chain 28143 chr18 78077248 + 5441461 5441762 AluYg6 310 - 9 310 92489 301 chain 16446 chr18 78077248 + 5445766 5446000 MER1B 344 + 103 342 137077 161 20 25 53 chain 12086 chr18 78077248 + 5449775 5450096 MER44A 345 - 27 345 151855 44 17 19 71 29 33 26 6 10 12 2 0 35 59 50 5 2 0 13 chain 29476 chr18 78077248 + 5488218 5488557 L1PA7 6471 + 6108 6454 86736 53 0 1 7 0 6 279 chain 32898 chr18 78077248 + 5565460 5565866 L1PA4 6152 - 0 390 79371 6 0 5 128 13 0 146 9 1 104 chain 39740 chr18 78077248 + 5565866 5566311 L1P1 4361 + 3885 4328 69699 266 1 0 154 1 0 23 chain 13259 chr18 78077248 + 5570604 5570757 L1PA5 6144 - 1 153 147247 146 1 0 6 chain 15543 chr18 78077248 + 5587345 5587579 MER44A 345 + 95 345 139759 6 0 6 58 15 22 65 1 4 89 chain 86496 chr18 78077248 + 5593254 5594302 MER11C 1089 - 16 1089 40970 13 10 15 55 0 2 250 0 1 45 0 4 371 0 4 58 0 9 246 chain 31488 chr18 78077248 + 5680631 5681077 MLT2A1 477 - 0 477 81663 19 1 0 35 1 0 7 3 31 212 22 26 4 0 1 142 chain 407006 chr18 78077248 + 5681307 5689071 L1PA3long 6157 - 15 4545 9876 2453 1 0 359 0 1 539 3234 0 1178 chain 303928 chr18 78077248 + 5684667 5687890 L1HS 6032 + 1 3224 13246 3223 chain 129589 chr18 78077248 + 5689828 5691853 L1PA11 4918 - 410 2140 28184 15 6 5 14 18 16 52 3 0 12 2 1 398 46 47 192 0 1 65 2 0 8 0 1 174 1 0 80 1 0 6 1 2 7 0 1 33 0 2 178 291 0 420 chain 23354 chr18 78077248 + 5699116 5699473 L1PA8 5853 - 0 348 113907 34 6 2 53 5 4 18 3 2 45 0 1 5 9 7 19 0 1 54 2 0 44 1 0 59 chain 4956 chr18 78077248 + 5715241 5715322 L1PB3 3668 + 3489 3566 195629 6 1 0 8 1 0 25 3 1 37 chain 6022 chr18 78077248 + 5754607 5754684 MLT1C 463 - 0 78 185041 58 0 1 19 chain 14329 chr18 78077248 + 5787803 5787972 L1PA4 6152 - 0 167 143460 19 3 0 129 0 1 18 chain 70412 chr18 78077248 + 5808138 5808993 L1PA7 6471 - 10 863 48208 5 3 0 146 1 2 22 0 1 440 1 0 237 chain 23808 chr18 78077248 + 5822098 5822461 THE1B 368 + 0 368 111428 169 1 0 25 51 57 117 chain 66005 chr18 78077248 + 5858612 5859428 L1P1 4361 - 775 1599 50095 305 0 1 32 11 14 12 7 11 449 chain 45008 chr18 78077248 + 5859963 5860667 L1MA2 4263 + 3423 4106 63049 63 0 1 85 1 0 12 5 1 77 1 0 11 4 0 16 2 1 80 3 4 35 4 1 135 1 28 10 29 0 75 15 8 40 chain 4868 chr18 78077248 + 5861766 5861836 MER41B 635 + 481 551 196613 12 1 0 14 1 2 42 chain 200949 chr18 78077248 + 5862419 5864795 L1PA6 6164 + 3759 6146 19148 144 0 2 143 1 0 396 0 1 189 0 2 507 0 1 261 0 2 186 0 2 237 2 0 11 13 14 50 0 1 82 2 3 148 0 1 4 chain 27244 chr18 78077248 + 5865812 5866186 PABL_A-int 1935 + 512 884 95453 84 2 0 43 1 0 5 1 2 24 1 0 82 0 1 131 chain 12200 chr18 78077248 + 5876670 5876888 L1MB3 1562 - 213 429 151424 86 1 0 24 51 50 56 chain 2953 chr18 78077248 + 5907149 5907182 L1MC4 1079 + 283 316 226015 33 chain 32417 chr18 78077248 + 5995947 5996419 MER75 514 + 0 485 80171 34 14 10 12 0 8 9 15 16 76 3 8 144 1 0 144 1 5 19 chain 39889 chr18 78077248 + 5997188 5997834 MER4A1_ 611 + 0 611 69475 40 3 4 10 15 0 50 20 21 81 23 10 78 17 0 68 1 8 17 6 5 69 0 1 135 0 1 13 chain 139143 chr18 78077248 + 6027032 6028805 L1PA8 5853 - 0 1776 26270 44 0 1 45 6 5 17 2 1 36 4 6 11 2 0 5 10 9 65 3 1 43 1 0 16 1 0 454 0 1 84 2 0 302 3 0 78 0 1 38 0 1 4 3 5 440 0 9 54 chain 148653 chr18 78077248 + 6034149 6035787 L1PA3long 6157 - 0 1639 24795 30 0 1 1608 chain 13768 chr18 78077248 + 6035787 6035937 L1P1 4361 + 2977 3127 144410 150 chain 255558 chr18 78077248 + 6063338 6066954 L1PB2 3958 - 215 3812 15956 62 1 0 64 1 0 70 4 2 46 0 13 34 4 0 13 2 0 62 6 0 16 1 0 54 2 0 383 1 0 57 1 0 375 0 7 8 8 0 10 0 1 49 1 10 376 3 4 123 8 0 5 0 8 31 6 1 74 0 5 10 1 0 80 0 4 95 0 1 3 6 0 89 8 9 119 7 0 9 12 14 93 4 0 81 0 1 152 2 1 5 0 1 134 28 21 6 0 7 86 13 16 87 0 1 178 10 6 4 1 0 69 0 1 103 0 2 61 2 0 4 1 0 48 1 0 7 10 0 26 chain 35371 chr18 78077248 + 6078643 6079132 MER1A 529 - 0 485 75704 18 2 1 50 1 2 344 38 34 36 chain 25818 chr18 78077248 + 6122340 6122696 THE1B 368 + 0 368 100796 44 0 15 106 9 8 119 2 1 8 1 0 67 chain 130165 chr18 78077248 + 6134327 6135885 THE1A-int 1579 - 0 1576 28056 9 0 1 720 0 1 158 1 11 474 0 6 196 chain 26966 chr18 78077248 + 6135889 6136245 THE1A 353 - 0 353 96382 49 1 0 116 1 0 75 7 6 107 chain 5237 chr18 78077248 + 6136248 6136311 MER50 708 + 366 430 192646 50 0 1 13 chain 4578 chr18 78077248 + 6136529 6136596 MER51A 677 + 179 236 199900 20 10 0 37 chain 58955 chr18 78077248 + 6149048 6149697 L1PA4 6152 - 0 649 53425 649 chain 22258 chr18 78077248 + 6153611 6153966 THE1D 372 + 0 372 119088 61 4 14 90 21 23 5 1 0 28 7 13 74 0 1 26 6 5 32 chain 545247 chr18 78077248 + 6163696 6169822 L1PA4 6152 + 3 6136 2041 1066 1 0 775 0 1 532 0 2 290 0 1 487 0 2 1039 1 3 434 1 0 241 0 1 285 1 0 846 0 1 127 chain 58635 chr18 78077248 + 6181817 6182803 L1PA15 4387 - 37 968 53618 21 5 0 12 9 7 40 11 8 43 17 12 22 1 0 12 0 12 29 2 1 26 6 5 168 1 0 24 0 1 13 17 15 34 57 0 18 5 0 10 7 21 10 1 3 356 1 0 8 chain 64901 chr18 78077248 + 6230429 6231758 L1PA15 4387 - 71 1562 50608 43 23 20 37 1 0 8 4 0 23 2 1 24 50 40 16 5 4 89 2 1 62 1 0 16 5 13 23 14 15 7 1 0 29 1 0 14 4 0 15 1 3 40 0 1 52 6 8 292 4 3 16 8 9 119 0 3 11 221 394 40 chain 204401 chr18 78077248 + 6232914 6235323 L1PA6 6164 + 3748 6157 18894 614 0 4 547 0 1 933 11 10 145 16 15 133 3 0 7 chain 4878 chr18 78077248 + 6241510 6241589 MADE1 96 + 0 94 196505 30 1 17 23 2 1 23 chain 17490 chr18 78077248 + 6277102 6277293 L1PA2 6032 + 5835 6026 134290 191 chain 8839 chr18 78077248 + 6286128 6286617 MER65C 458 + 274 420 166439 33 6 5 14 345 3 91 chain 14645 chr18 78077248 + 6322527 6322720 L1MA3 4352 + 3751 3947 142436 153 1 4 39 chain 23034 chr18 78077248 + 6322849 6323246 MSTA 426 + 2 426 115475 94 12 33 76 60 58 36 10 18 109 chain 114898 chr18 78077248 + 6353503 6355147 L1MA2 4263 + 2477 4114 32820 14 0 3 45 1 0 14 0 4 88 8 8 138 8 10 64 7 6 37 1 2 143 4 3 4 0 1 276 1 4 62 0 1 180 5 1 75 2 1 135 2 0 5 0 2 5 3 0 55 3 1 92 2 1 9 1 0 92 7 0 17 0 1 29 1 0 9 chain 530097 chr18 78077248 + 6377333 6383769 L1PA7 6471 - 11 6471 4177 562 0 3 123 5 4 64 1 4 79 1 0 945 0 2 298 0 1 763 0 1 972 13 0 759 0 1 186 5 6 289 1 4 123 0 19 149 1 2 354 2 5 325 4 5 168 0 1 177 2 1 65 chain 36062 chr18 78077248 + 6391779 6392265 L1PB3 3668 + 2122 2626 74817 82 0 1 71 0 5 55 0 4 21 7 0 193 1 15 41 0 1 15 chain 13353 chr18 78077248 + 6403708 6403882 L1PB2 3958 + 3668 3838 146871 11 1 0 74 2 0 22 1 0 63 chain 4200 chr18 78077248 + 6419222 6419302 Tigger1 2417 - 30 111 204542 21 21 22 38 chain 98430 chr18 78077248 + 6419310 6420387 L1PA3long 6157 + 5075 6149 37181 1067 3 0 7 chain 3048 chr18 78077248 + 6479124 6479160 L1MA9 1812 + 908 944 224026 36 chain 8174 chr18 78077248 + 6494194 6494289 LTR39 781 - 44 139 170102 95 chain 6083 chr18 78077248 + 6498150 6498221 MER66B 489 - 418 489 184556 71 chain 126189 chr18 78077248 + 6518104 6519623 L1PA7 6471 - 1 1518 29039 699 4 3 140 8 7 668 chain 26187 chr18 78077248 + 6533366 6533722 THE1B 368 + 0 356 99253 13 2 0 27 0 5 127 2 1 11 10 8 164 chain 3031 chr18 78077248 + 6555561 6555650 MER112 246 - 131 217 224365 25 38 35 26 chain 27964 chr18 78077248 + 6647576 6647946 THE1C 375 - 0 370 93128 25 1 0 155 11 10 4 0 1 92 0 1 82 chain 28663 chr18 78077248 + 6696240 6696615 THE1C 375 + 0 375 90476 115 1 2 6 3 0 61 1 2 127 0 1 61 chain 536030 chr18 78077248 + 6699817 6705943 L1PA5 6144 + 3 6138 3443 217 0 6 215 0 1 37 0 1 241 3 0 6 3 4 704 0 2 8 14 5 171 0 4 75 0 1 788 1 0 42 0 1 258 0 1 362 0 2 15 1 0 73 1 0 1532 0 1 484 0 1 26 0 1 707 1 2 141 chain 22394 chr18 78077248 + 6725404 6725667 AluSc 308 - 45 308 118514 263 chain 2865 chr18 78077248 + 6750650 6750712 MSTC 436 - 178 242 227588 14 16 15 15 0 3 17 chain 38419 chr18 78077248 + 6756559 6757085 MLT2A2 560 - 0 560 71552 4 0 1 94 9 28 36 0 1 56 3 4 5 0 11 111 3 0 5 0 3 140 0 1 60 chain 20050 chr18 78077248 + 6788048 6788367 MSTA 426 + 10 337 126976 118 2 0 8 7 14 54 38 41 92 chain 32944 chr18 78077248 + 6791028 6791462 MLT2A1 477 - 0 477 79302 53 3 39 62 1 0 8 0 2 140 1 5 25 0 1 92 0 1 49 chain 138996 chr18 78077248 + 6799215 6800865 L1PA7 6471 + 4789 6465 26306 272 0 5 213 5 24 316 1 3 76 0 2 759 2 0 6 chain 144639 chr18 78077248 + 6826687 6828377 SVA_D 2077 - 0 2053 25377 676 8 0 11 8 16 188 5 83 15 0 2 12 0 51 30 3 0 32 0 82 170 1 38 21 0 40 40 0 76 470 chain 18315 chr18 78077248 + 6828412 6828696 L1PA16 3655 - 889 1174 132038 44 59 60 181 chain 26860 chr18 78077248 + 6830326 6830677 L1PA7 6471 - 3 359 96771 7 4 0 96 9 16 216 0 2 19 chain 36800 chr18 78077248 + 6878097 6878496 L1PA3long 6157 + 5750 6149 73800 399 chain 8030 chr18 78077248 + 6883923 6884087 L1MEb 951 - 109 270 170867 20 1 0 19 46 44 78 chain 12671 chr18 78077248 + 6898770 6899027 L1PB1 5432 + 5192 5427 149567 28 2 1 15 1 0 43 1 0 17 12 0 31 2 0 4 1 0 15 2 0 24 1 0 12 10 9 13 1 3 15 2 0 5 chain 46082 chr18 78077248 + 6925620 6926179 LTR19B 566 + 0 566 61963 251 0 1 42 0 1 50 0 2 22 1 0 160 3 7 30 chain 22754 chr18 78077248 + 6943575 6943864 AluSp 311 + 10 304 116809 122 3 0 5 2 10 157 chain 4914 chr18 78077248 + 6949641 6949704 MER87 546 + 117 180 196125 63 chain 24968 chr18 78077248 + 6997056 6997359 AluSc 308 - 4 299 104967 269 8 0 26 chain 23518 chr18 78077248 + 7055797 7056090 AluY 311 + 0 295 113025 4 1 0 114 0 1 13 0 1 142 0 2 4 1 0 14 chain 3052 chr18 78077248 + 7065324 7065359 L1MC2 1988 + 1953 1988 223957 35 chain 148397 chr18 78077248 + 7097821 7099469 SVA_D 2077 + 6 2065 24827 19 1 0 6 8 0 174 0 11 662 0 310 129 0 99 649 chain 24164 chr18 78077248 + 7119468 7119764 AluY 311 + 8 302 109406 56 2 0 68 0 1 9 4 3 157 chain 25036 chr18 78077248 + 7138940 7139255 AluY 311 + 0 300 104611 123 18 3 174 chain 21426 chr18 78077248 + 7149353 7149627 AluY 311 + 9 301 122418 16 0 18 89 0 1 10 6 5 153 chain 21381 chr18 78077248 + 7151517 7151777 AluSp 311 + 11 268 122579 41 3 0 77 1 0 47 0 1 91 chain 56159 chr18 78077248 + 7153868 7154487 L1PA3long 6157 + 5537 6157 55036 615 0 1 4 chain 13253 chr18 78077248 + 7159574 7159717 L1PA5 6144 - 12 155 147275 143 chain 131566 chr18 78077248 + 7177683 7179228 LTR12C 1709 - 0 1709 27729 119 0 10 121 7 0 231 0 4 106 4 2 4 1 0 116 0 159 404 0 1 432 chain 286375 chr18 78077248 + 7180856 7184173 L1PA6 6164 + 2839 6162 14265 305 1 0 41 3 0 4 0 1 54 0 1 153 0 1 34 0 1 4 1 0 927 0 4 946 0 3 844 chain 13587 chr18 78077248 + 7201052 7201220 LTR12 884 - 650 884 146027 28 0 66 140 chain 87026 chr18 78077248 + 7203194 7204268 SVA_B 1603 - 2 1603 40769 117 0 11 406 0 37 28 1 165 44 0 312 118 1 2 287 11 35 19 23 1 19 chain 10547 chr18 78077248 + 7216510 7216676 L1MA6 2487 - 229 379 158055 16 0 1 4 26 10 7 1 0 112 chain 10223 chr18 78077248 + 7229569 7229703 MLT1B 390 - 40 182 159500 28 1 0 43 0 9 62 chain 20133 chr18 78077248 + 7241021 7241358 THE1B 368 - 0 361 126738 125 30 45 5 3 0 18 12 9 99 8 23 37 chain 25960 chr18 78077248 + 7241678 7241954 AluYa5 310 - 1 277 100173 276 chain 2811 chr18 78077248 + 7250215 7250245 MER58A 224 + 53 83 228617 30 chain 10427 chr18 78077248 + 7270657 7270891 L1PA16 3655 + 3304 3534 158573 32 62 55 22 7 8 65 9 11 37 chain 8309 chr18 78077248 + 7299330 7299702 MSTB 430 + 24 417 169345 22 13 10 33 11 12 25 212 235 56 chain 52022 chr18 78077248 + 7308037 7308600 L1PA2 6032 - 0 563 57610 563 chain 21257 chr18 78077248 + 7334234 7334765 L1PB1 5432 + 5030 5427 122999 73 1 2 9 97 2 18 1 0 13 1 0 9 2 0 3 2 0 9 2 0 51 4 3 15 2 1 43 1 0 15 3 0 6 13 6 13 8 6 4 1 0 15 3 1 23 1 0 21 1 0 13 10 0 18 2 0 5 chain 14427 chr18 78077248 + 7346077 7346413 L1PB1 5432 - 12 318 143128 16 1 0 13 1 0 17 7 6 22 6 4 10 1 0 4 3 1 19 25 14 13 1 0 44 1 0 16 2 1 53 29 18 8 0 3 24 chain 8135 chr18 78077248 + 7347258 7347772 L1ME1 1623 + 711 1271 170308 13 1 0 18 6 0 15 33 33 18 235 282 60 1 0 10 77 83 11 0 1 16 chain 8096 chr18 78077248 + 7361248 7361669 LTR12C 1709 + 718 1055 160012 31 145 62 11 41 0 15 79 0 38 5 124 56 chain 10975 chr18 78077248 + 7361691 7361874 LTR12C 1709 + 676 818 156298 126 41 0 16 chain 56029 chr18 78077248 + 7364757 7365507 LTR12 884 - 0 884 55100 84 9 15 301 3 1 107 2 0 30 5 138 173 18 17 18 chain 3882 chr18 78077248 + 7387739 7387784 LTR12F 595 + 215 260 209149 45 chain 488076 chr18 78077248 + 7398134 7403450 L1PA2 6032 + 711 6032 7438 1691 0 1 1214 0 1 611 0 4 1779 1 0 20 chain 63443 chr18 78077248 + 7407300 7407999 L1PA4 6152 - 9 709 51267 330 0 1 369 chain 23781 chr18 78077248 + 7407999 7408271 AluYc 301 - 26 300 111591 153 0 2 119 chain 18217 chr18 78077248 + 7416267 7416491 AluY 311 + 85 306 132287 40 0 1 173 4 0 7 chain 19582 chr18 78077248 + 7417190 7417447 AluSc 308 + 40 291 128424 234 11 5 12 chain 66085 chr18 78077248 + 7424902 7426028 L1PA14 3548 - 158 1134 50062 12 4 2 35 14 9 111 1 0 84 1 0 6 2 0 17 4 0 103 14 10 48 2 0 14 3 1 24 3 0 157 21 22 119 134 4 72 6 5 52 1 2 27 5 10 30 chain 36511 chr18 78077248 + 7445110 7445511 L1PA2 6032 + 5631 6032 74225 401 chain 25401 chr18 78077248 + 7446122 7446415 AluSg7 307 - 4 297 102679 293 chain 4077 chr18 78077248 + 7473026 7473072 MLT1B 390 + 296 342 206234 46 chain 23900 chr18 78077248 + 7473156 7473451 AluSc5 308 + 0 295 110913 295 chain 9298 chr18 78077248 + 7484520 7484667 MLT2B1 522 - 371 522 164069 21 13 14 57 3 5 47 0 1 6 chain 19517 chr18 78077248 + 7485366 7485640 AluSc5 308 + 4 290 128605 44 40 52 190 chain 37015 chr18 78077248 + 7514970 7515486 LTR10D 510 + 0 510 73499 64 7 0 11 2 0 6 0 11 11 3 0 43 0 1 77 7 0 10 6 9 176 2 0 91 chain 83697 chr18 78077248 + 7536217 7537308 HERVL-int 5654 - 0 1099 42037 199 6 5 17 4 0 63 0 3 202 0 1 64 15 16 425 1 0 32 15 24 48 chain 139506 chr18 78077248 + 7552690 7554271 L1PA5 6144 - 2 1586 26217 7 4 0 329 0 1 33 0 2 475 0 4 733 chain 93793 chr18 78077248 + 7554271 7555322 L1P2 5180 + 1696 2746 38358 34 0 1 221 2 0 794 chain 3238 chr18 78077248 + 7563308 7563347 Zaphod 902 + 397 436 220288 39 chain 25276 chr18 78077248 + 7573576 7573888 AluSq10 312 - 1 312 103341 221 1 0 90 chain 28173 chr18 78077248 + 7611586 7611939 THE1B 368 + 0 368 92391 44 0 15 116 1 0 23 0 2 99 1 0 69 chain 4612 chr18 78077248 + 7621118 7621217 MIR 256 - 64 185 199483 26 29 51 44 chain 135272 chr18 78077248 + 7651416 7652897 L1PA3long 6157 + 4662 6143 26960 1481 chain 18565 chr18 78077248 + 7654841 7655186 L1PA13 3608 - 131 465 131321 9 1 0 20 2 0 5 2 0 9 5 4 34 2 0 5 1 0 25 0 1 30 1 0 33 2 0 29 2 0 37 13 17 34 26 24 18 chain 35818 chr18 78077248 + 7662268 7662834 L1MA3 4352 + 3788 4332 75110 305 32 9 9 0 3 65 1 0 20 1 6 36 22 20 21 1 0 6 1 0 26 1 0 14 1 0 4 chain 235541 chr18 78077248 + 7701707 7704590 L1PA7 6471 - 4 2926 16999 6 4 0 124 2 8 83 5 9 207 0 8 311 2 1 8 0 2 78 4 3 24 10 7 335 5 20 35 0 1 198 0 9 34 2 1 111 3 0 25 0 1 815 0 1 418 0 5 34 chain 8484 chr18 78077248 + 7710855 7710979 L1PB 1623 + 1345 1470 168384 66 0 3 32 1 0 7 2 1 16 chain 323466 chr18 78077248 + 7711037 7715192 L1P3 4156 + 5 4139 12463 222 15 0 15 5 19 58 2 1 262 17 18 65 2 1 268 6 0 4 34 0 26 0 13 162 0 3 9 1 0 226 7 0 782 0 1 102 1 0 82 1 2 64 1 0 219 7 0 67 5 8 182 11 15 77 0 1 114 0 4 395 3 2 99 0 1 14 0 1 272 0 10 214 2 0 9 2 1 24 chain 81246 chr18 78077248 + 7718024 7719180 L1PB2 3958 + 2682 3838 43065 24 2 1 9 7 8 22 9 8 167 0 3 383 2 0 56 1 0 11 1 0 65 5 3 9 4 0 58 1 15 16 2 0 77 1 0 62 1 0 61 0 1 12 2 0 21 4 3 61 chain 8486 chr18 78077248 + 7732958 7733054 MER61C 433 - 0 96 168380 96 chain 44146 chr18 78077248 + 7733086 7733653 L1PA8 5853 - 6 567 64016 87 1 0 19 2 1 50 1 0 11 1 0 20 6 5 44 2 0 21 0 2 23 1 0 278 chain 39094 chr18 78077248 + 7738104 7739555 HSMAR1 1287 - 0 1284 70611 335 929 744 31 0 18 156 chain 15979 chr18 78077248 + 7740750 7741027 LTR56 451 - 163 440 138412 69 1 0 83 61 62 63 chain 4455 chr18 78077248 + 7798186 7798242 L1MB2 1706 + 1638 1694 201287 56 chain 40320 chr18 78077248 + 7823429 7823936 MLT2A2 560 + 13 560 68854 319 6 35 32 3 14 147 chain 7393 chr18 78077248 + 7830377 7830515 Tigger3c 601 - 11 152 174813 35 34 37 69 chain 525736 chr18 78077248 + 7863206 7869653 L1PA7 6471 - 5 6471 4610 89 0 2 61 0 1 689 0 3 1228 1 12 21 0 1 98 0 1 348 1 0 14 0 3 57 1 0 341 1 0 20 7 6 833 9 0 741 0 3 425 0 3 20 9 8 12 2 3 56 0 1 66 10 9 655 0 1 21 1 2 203 1 2 200 1 0 26 11 13 168 chain 3176 chr18 78077248 + 7882242 7882280 MER5C 305 + 190 228 221407 38 chain 15970 chr18 78077248 + 7917697 7918039 L1MA4 2864 - 63 365 138454 32 12 11 16 92 56 14 3 0 173 chain 559999 chr18 78077248 + 7966443 7972472 L1PA2 6032 + 3 6032 356 6029 chain 17100 chr18 78077248 + 7995567 7995781 U3 216 + 0 214 135315 214 chain 5687 chr18 78077248 + 7999766 7999987 MLT2B4 540 - 4 218 188230 28 24 20 22 7 9 32 64 11 10 1 0 8 12 61 13 chain 25427 chr18 78077248 + 8021364 8021757 L1PA8 5853 - 0 394 102561 93 1 0 19 2 1 23 0 1 24 8 7 6 1 0 71 2 0 36 22 28 85 chain 558116 chr18 78077248 + 8057450 8063461 L1PA2 6032 - 0 6020 490 1508 0 1 2444 2 1 1916 0 9 141 chain 5764 chr18 78077248 + 8073210 8073276 MER41B 635 + 481 547 187500 66 chain 10173 chr18 78077248 + 8087334 8087462 THE1C 375 - 1 130 159747 24 1 0 89 0 2 14 chain 12986 chr18 78077248 + 8099889 8100128 MSTB 430 - 15 245 148294 17 0 2 111 0 1 4 45 31 31 2 0 9 1 0 8 0 5 11 chain 7138 chr18 78077248 + 8118848 8118956 MER30 238 + 127 238 176486 25 0 6 41 7 4 35 chain 505537 chr18 78077248 + 8145324 8152113 L1PA7 6471 - 3 6471 6492 391 9 0 3 1 0 277 321 0 268 0 1 281 5 8 230 0 1 42 1 2 332 1 3 104 0 2 102 1 0 142 1 3 278 4 0 160 10 10 225 5 3 10 0 1 86 1 0 113 6 20 8 14 0 711 10 11 34 0 1 21 0 3 5 2 0 55 0 2 304 0 1 140 0 1 77 0 2 235 1 0 304 0 1 75 0 1 107 0 19 488 17 22 116 19 6 19 26 23 105 1 0 61 12 0 80 22 21 67 0 1 243 chain 15779 chr18 78077248 + 8171732 8172067 MER47A 366 - 0 365 139022 22 66 82 54 3 2 137 32 47 21 chain 8581 chr18 78077248 + 8172102 8172201 THE1B 368 - 26 125 167837 99 chain 19797 chr18 78077248 + 8186101 8186343 AluSc 308 + 58 299 127822 199 1 0 42 chain 19814 chr18 78077248 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0 5 9 11 14 239 10 1 29 0 1 36 9 6 169 chain 3036 chr18 78077248 + 8465353 8465398 MSTB 430 + 0 46 224276 21 1 2 23 chain 26911 chr18 78077248 + 8488448 8488852 MSTA 426 + 0 426 96590 100 22 23 5 1 0 15 0 13 80 2 0 36 0 1 27 15 25 101 chain 6610 chr18 78077248 + 8494345 8494434 MLT1D-int 1367 + 0 86 180383 7 3 0 79 chain 83225 chr18 78077248 + 8497631 8498636 L1PA6 6164 - 17 1018 42238 139 1 0 8 10 8 672 1 5 116 13 8 45 chain 4396 chr18 78077248 + 8502870 8502956 Tigger4a 237 - 1 87 201993 34 8 15 11 7 0 26 chain 3190 chr18 78077248 + 8503101 8503142 L1MB4 1306 - 666 707 221099 41 chain 237504 chr18 78077248 + 8530847 8534327 L1PA14 3548 + 91 3485 16909 11 5 3 37 8 6 69 1 0 20 2 1 23 17 15 19 10 8 52 22 14 240 1 0 340 25 15 293 8 10 42 0 2 178 1 14 12 5 9 371 72 28 45 4 1 203 0 1 37 5 1 229 9 5 92 1 0 24 4 8 124 0 1 233 13 12 14 2 0 42 6 3 7 2 0 10 14 10 78 19 15 13 2 0 6 1 0 84 1 0 7 7 17 87 1 0 10 5 1 36 4 2 12 5 3 18 1 0 44 7 0 7 1 0 20 chain 7796 chr18 78077248 + 8551239 8551347 LTR8A 794 - 664 777 172323 48 4 9 56 chain 542026 chr18 78077248 + 8573218 8579364 L1PA4 6152 - 9 6151 2497 28 5 0 246 0 1 489 5 6 673 0 1 445 1 0 1077 1 0 14 0 2 170 7 8 668 3 4 34 8 0 718 0 2 471 0 1 280 0 1 803 chain 22944 chr18 78077248 + 8598872 8599149 AluY 311 + 9 288 115886 122 7 9 148 chain 810 chr18 78077248 + 8606671 8606713 MER44A 345 + 108 150 148674 42 chain 18856 chr18 78077248 + 8606740 8607070 Tigger2a 444 - 9 322 130502 12 25 27 21 0 1 100 48 28 124 chain 2779 chr18 78077248 + 8607195 8607339 MER44A 345 + 165 312 148674 16 0 3 128 chain 83460 chr18 78077248 + 8622327 8623375 MER11C 1089 - 26 1089 42133 190 7 8 83 0 8 36 0 1 38 1 0 5 0 4 123 22 18 186 0 1 41 0 4 65 0 1 251 chain 206904 chr18 78077248 + 8646436 8648922 L1P3 4156 + 7 2505 18726 244 2 1 67 2 1 78 1 5 879 4 1 483 0 4 116 0 3 268 0 5 297 1 2 44 chain 224232 chr18 78077248 + 8649356 8652021 L1PA7 6471 + 2499 6466 17637 142 1 0 22 0 2 35 0 1 153 0 1 60 0 1274 336 0 16 137 0 2 292 1 2 331 1 7 309 0 3 56 1 0 23 1 0 635 1 0 128 chain 38660 chr18 78077248 + 8665164 8665713 MER51A 677 - 37 670 71214 101 0 1 25 1 0 105 0 72 74 5 35 8 0 5 13 11 1 12 0 4 8 17 0 169 chain 87732 chr18 78077248 + 8710886 8711839 L1PA2 6032 - 0 953 40468 953 chain 3612 chr18 78077248 + 8720744 8720786 MER58C 217 + 159 201 213463 42 chain 24005 chr18 78077248 + 8730968 8731266 AluY 311 + 8 301 110300 35 1 0 89 0 1 156 3 0 6 2 0 6 chain 16678 chr18 78077248 + 8736283 8736546 MER47A 366 - 1 265 136470 28 6 7 53 0 22 8 22 0 101 0 1 8 1 0 36 chain 24841 chr18 78077248 + 8742315 8742681 THE1C 375 - 0 375 105674 26 1 0 115 1 5 33 4 0 14 0 3 83 25 26 17 0 6 47 chain 23685 chr18 78077248 + 8761570 8761913 THE1B 368 - 0 367 112123 125 7 15 14 0 4 6 8 6 29 1 0 114 1 16 38 chain 15445 chr18 78077248 + 8794732 8794933 LTR24B 570 + 107 310 140067 55 0 2 20 0 4 6 4 0 116 chain 59275 chr18 78077248 + 8814960 8815626 L1PA3long 6157 + 5487 6157 53238 396 0 2 129 0 2 141 chain 9887 chr18 78077248 + 8836434 8836688 L1MB5 1630 - 17 282 161141 12 1 0 40 76 88 25 2 3 52 13 12 33 chain 6129 chr18 78077248 + 8867457 8867602 L1MB3 1562 + 1394 1516 184186 27 1 0 6 38 22 9 6 0 58 chain 36233 chr18 78077248 + 8876168 8876613 LTR10F 562 + 2 562 74583 114 0 115 331 chain 35591 chr18 78077248 + 8876834 8877335 LTR10F 562 - 1 562 75424 60 0 1 201 10 12 9 2 0 13 0 24 9 0 14 11 12 5 39 1 29 134 chain 192208 chr18 78077248 + 8877637 8880153 HERVIP10FH-int 2884 - 60 2735 19847 35 10 4 17 1 0 13 1 0 44 7 6 66 1 0 365 1 0 24 1 0 200 1 0 65 3 10 58 3 0 74 0 1 38 12 221 114 5 0 58 4 3 11 1 0 7 3 0 10 4 1 175 2 0 450 22 2 121 5 4 42 0 2 185 1 0 4 8 4 171 0 1 10 10 6 53 chain 34051 chr18 78077248 + 8882791 8883317 LTR10F 562 - 0 562 77544 56 0 6 208 85 87 61 3 31 113 chain 479898 chr18 78077248 + 8884058 8889618 L1PA5 6144 - 16 5547 7731 404 0 1 941 22 0 1544 20 13 60 0 1 851 0 4 1138 9 0 366 0 3 194 1 0 4 0 1 6 chain 21181 chr18 78077248 + 8895106 8895485 MSTA 426 + 0 426 123269 97 39 63 48 3 0 6 34 37 45 1 21 43 0 3 63 chain 13264 chr18 78077248 + 8900001 8900176 MER41-int 2638 + 576 750 147237 98 1 0 76 chain 26965 chr18 78077248 + 8906668 8907016 L1PB1 5432 + 4714 5061 96388 91 2 1 255 chain 25634 chr18 78077248 + 8907620 8908361 MER41-int 2638 + 732 1126 101571 77 364 21 12 2 0 130 13 10 16 6 7 121 chain 40410 chr18 78077248 + 8913644 8914107 LTR2 463 + 0 463 68720 463 chain 422861 chr18 78077248 + 8915878 8920900 Harlequin-int 5206 + 125 5206 9462 19 2 1 161 1 0 36 1 2 26 4 0 84 0 1 28 5 0 43 0 1 12 3 7 27 0 1 108 1 0 516 7 10 451 0 2 316 0 58 277 8 9 646 0 1 330 4 0 390 0 1 875 0 1 641 chain 40849 chr18 78077248 + 8920900 8921363 LTR2 463 + 0 463 68096 463 chain 68773 chr18 78077248 + 8923162 8923911 L1PA3long 6157 + 5408 6157 48910 749 chain 26600 chr18 78077248 + 8933253 8933607 MER51B 395 + 0 395 97662 34 18 5 72 0 56 78 1 0 32 2 1 117 chain 1325 chr18 78077248 + 8934239 8934452 LTR24 460 - 0 212 128643 53 63 62 97 chain 117771 chr18 78077248 + 8934579 8935985 LTR12C 1709 - 0 1709 31868 113 0 10 358 0 4 106 0 288 316 4 5 195 1 0 4 4 5 305 chain 1232 chr18 78077248 + 8937177 8937375 LTR24 460 - 239 460 128643 52 2 0 5 20 45 119 chain 8203 chr18 78077248 + 8950649 8950770 MLT1E1 597 + 464 581 169940 8 10 0 47 0 6 56 chain 29493 chr18 78077248 + 8954362 8954752 LTR7 482 + 0 476 86657 86 0 50 88 0 1 15 0 3 12 9 40 12 0 1 168 chain 52136 chr18 78077248 + 8973503 8974230 L1MA1 4479 - 291 998 57534 16 6 0 21 1 0 9 3 2 33 2 0 29 1 0 126 3 0 4 1 0 84 2 0 5 0 4 9 2 0 20 1 0 49 0 2 20 1 0 16 2 0 24 1 0 196 2 0 38 chain 5618 chr18 78077248 + 8985143 8985304 MER2 342 + 147 322 188887 60 83 97 18 chain 84199 chr18 78077248 + 9006845 9008166 L1PA5 6144 + 5148 6144 41822 104 4 0 261 326 5 382 2 1 105 0 1 137 chain 4522 chr18 78077248 + 9022188 9022281 L1MA4 2864 - 55 140 200530 31 13 11 29 6 0 14 chain 60070 chr18 78077248 + 9023627 9024282 SVA_D 2077 - 0 665 52791 338 0 10 317 chain 26162 chr18 78077248 + 9036100 9036374 AluYa5 310 - 0 274 99358 274 chain 24154 chr18 78077248 + 9040095 9040374 AluSc 308 + 14 296 109456 174 0 3 105 chain 38142 chr18 78077248 + 9043143 9043678 MER1A 529 + 0 529 71925 17 1 2 61 17 12 72 3 0 293 2 0 5 9 12 55 chain 118390 chr18 78077248 + 9050178 9052060 THE1B-int 1605 + 0 1605 31649 430 0 25 24 31 43 108 17 18 36 0 1 9 16 15 677 3 4 136 316 0 79 chain 8739 chr18 78077248 + 9052060 9052166 THE1B 368 + 0 109 166984 31 0 3 75 chain 5312 chr18 78077248 + 9058155 9058251 LTR72B 493 + 351 454 191908 19 15 24 29 2 0 31 chain 52362 chr18 78077248 + 9093037 9093623 L1PA5 6144 + 5544 6130 57388 586 chain 34302 chr18 78077248 + 9113531 9113948 LTR2 463 + 0 463 77203 130 0 4 28 1 6 63 0 31 155 0 6 40 chain 67693 chr18 78077248 + 9162719 9165302 L1PA11 4918 - 416 3645 15366 14 1 0 14 2 0 43 0 3 34 2 1 6 0 4 7 3 0 41 4 0 10 9 12 340 2 1 201 9 21 84 2 0 208 0 4 62 0 1 191 1 2 50 8 14 62 6 7 108 3 4 130 2 621 12 1 3 212 0 4 39 0 3 103 20 19 36 11 5 309 0 5 5 5 0 13 10 13 6 1 0 78 0 1 63 chain 497842 chr18 78077248 + 9165719 9171322 L1PA4 6152 - 1 6149 6965 148 1 0 695 0 4 331 0 1 1290 1 0 974 0 5 167 0 3 1111 2 7 251 0 3 425 0 1 112 0 525 95 chain 40621 chr18 78077248 + 9171338 9172888 L1PA11 4918 - 3648 4911 15366 34 7 9 167 0 1 11 14 5 46 4 13 104 0 5 2 312 0 180 0 12 180 0 1 218 3 6 57 2 1 5 2 0 33 1 0 138 2 0 22 0 7 6 chain 5785 chr18 78077248 + 9219516 9219651 MER58C 217 - 15 151 187328 53 52 53 30 chain 5781 chr18 78077248 + 9249647 9249739 HY3 101 - 0 96 187344 29 11 15 52 chain 518434 chr18 78077248 + 9264855 9270772 L1PA4 6152 + 1 6152 5333 97 0 217 421 1 0 137 0 2 116 1 0 50 0 2 19 0 2 351 2 7 1107 6 0 53 0 2 765 0 5 22 6 5 296 3 0 681 0 2 221 0 1 718 0 8 510 2 0 187 1 0 129 1 0 8 0 4 6 chain 7762 chr18 78077248 + 9297528 9297664 LTR12C 1709 + 932 1109 172534 32 0 41 62 3 18 7 15 0 17 chain 32784 chr18 78077248 + 9304538 9305044 LTR10A 586 - 12 563 79556 65 0 1 172 0 13 40 1 2 69 19 20 43 28 48 20 13 22 36 chain 188321 chr18 78077248 + 9305067 9307862 L1PBa 3878 + 1261 3717 20208 191 324 0 118 0 2 33 31 9 533 5 9 278 9 4 7 0 5 257 0 3 512 3 0 43 1 2 101 1 0 299 0 1 49 chain 12710 chr18 78077248 + 9308127 9308398 L1PB1 5432 + 5168 5409 149416 52 2 1 16 14 5 39 1 0 15 4 1 16 8 0 14 10 7 12 2 0 24 2 1 20 1 0 13 1 0 5 chain 3987 chr18 78077248 + 9309503 9309714 L1MC1 2226 + 1998 2181 207576 21 4 7 21 111 82 7 1 0 13 10 9 23 chain 5128 chr18 78077248 + 9344420 9344483 L1MB7 1623 - 453 516 193800 63 chain 14198 chr18 78077248 + 9352959 9353253 Tigger3a 397 + 43 388 143889 32 15 64 136 76 78 35 chain 33862 chr18 78077248 + 9367229 9370009 L1MA8 2339 - 107 1074 77837 13 0 5 5 5 0 10 9 3 33 89 77 77 1 0 29 295 8 14 3 0 32 48 0 20 2 10 49 11 7 27 0 49 81 5 6 4 1 0 14 7 3 13 1717 212 166 chain 3236 chr18 78077248 + 9367739 9367788 MER1B 344 + 236 337 220310 25 2 54 22 chain 5921 chr18 78077248 + 9372069 9372660 L1MCa 1829 + 1597 1746 185978 24 9 7 26 448 10 25 19 20 26 3 0 11 chain 34448 chr18 78077248 + 9378200 9378669 L1PREC2 3366 + 2158 2625 76997 243 38 36 188 chain 29955 chr18 78077248 + 9385404 9385723 AluYb8 318 + 0 318 84955 123 1 0 195 chain 11179 chr18 78077248 + 9391588 9391730 Tigger1 2417 - 2166 2309 155524 68 1 2 73 chain 31692 chr18 78077248 + 9393967 9394502 L1MA5A 2387 + 1808 2292 81335 60 0 3 162 1 0 25 5 6 6 2 0 37 1 0 50 9 1 23 2 0 34 10 7 9 36 0 53 2 0 8 chain 24794 chr18 78077248 + 9397729 9398025 AluSp 311 + 8 305 105921 93 1 0 4 0 2 198 chain 38578 chr18 78077248 + 9402630 9403169 LTR12F 595 + 0 595 71327 91 21 16 26 0 82 25 18 0 115 4 0 7 0 1 232 chain 39359 chr18 78077248 + 9422733 9423225 LTR10F 562 - 12 562 70238 273 5 11 12 0 52 202 chain 107679 chr18 78077248 + 9424584 9426212 HERVH-int 3825 - 0 1454 34805 260 13 0 174 0 4 89 1 2 238 250 84 603 chain 31698 chr18 78077248 + 9430274 9430622 SVA_A 1864 - 342 690 81330 348 chain 8734 chr18 78077248 + 9439430 9439555 L1MB3 1562 + 706 822 167006 38 9 0 78 chain 23999 chr18 78077248 + 9445350 9445739 L1MA5A 2387 - 192 577 110338 13 1 0 27 2 0 48 1 0 36 5 4 28 24 23 137 11 13 56 chain 39847 chr18 78077248 + 9447124 9447628 LTR10G 522 + 20 522 69540 19 1 0 88 0 1 225 0 1 94 4 1 73 chain 25474 chr18 78077248 + 9456200 9456536 THE1C 375 - 40 375 102341 129 4 2 21 1 2 181 chain 16911 chr18 78077248 + 9471623 9471858 L1PB2 3958 - 120 352 135821 52 1 0 5 0 1 5 2 1 95 1 0 62 1 0 11 chain 3266 chr18 78077248 + 9493685 9493845 MER21A 919 + 26 76 219671 26 39 0 5 71 0 19 chain 24342 chr18 78077248 + 9496855 9497135 AluSp 311 - 21 303 108406 184 0 2 96 chain 8134 chr18 78077248 + 9499681 9499773 Tigger3a 397 + 204 296 170314 92 chain 76999 chr18 78077248 + 9502229 9503561 MER11A 1151 + 0 1151 44968 55 0 99 140 4 0 30 0 2 44 321 0 70 4 5 89 12 13 135 6 9 54 0 4 70 6 40 292 chain 21020 chr18 78077248 + 9510747 9510988 L1PA5 6144 - 2 244 123845 122 0 1 119 chain 34618 chr18 78077248 + 9528071 9528567 MER9a3 513 - 0 466 76728 56 1 0 7 66 0 25 0 16 24 1 23 106 1 0 209 chain 4523 chr18 78077248 + 9556739 9556928 MER8 282 + 13 264 200513 36 20 67 21 85 101 20 1 0 6 chain 26030 chr18 78077248 + 9611728 9612025 AluSp 311 + 1 296 99899 243 2 0 52 chain 2929 chr18 78077248 + 9623937 9623970 L1MB8 1703 - 547 580 226514 33 chain 23618 chr18 78077248 + 9624086 9624366 AluY 311 + 27 308 112482 105 0 1 175 chain 31309 chr18 78077248 + 9668170 9668635 LTR12F 595 + 0 588 81974 103 6 1 32 40 103 33 5 6 8 0 64 238 chain 2986 chr18 78077248 + 9686274 9686309 MER33 330 - 107 142 225327 35 chain 27241 chr18 78077248 + 9689106 9689511 L1PA8 5853 - 0 402 95458 93 1 0 19 3 2 39 5 7 14 1 0 70 2 0 45 1 0 67 13 14 32 chain 37529 chr18 78077248 + 9692739 9693159 L1PA4 6152 - 1 423 72776 112 0 1 225 0 1 83 chain 30765 chr18 78077248 + 9696117 9696551 LTR46 455 + 0 455 82923 126 4 0 43 8 8 11 0 4 112 1 0 42 0 1 16 13 38 7 2 0 10 2 0 37 chain 4240 chr18 78077248 + 9697306 9697353 LTR46 455 - 179 226 204013 47 chain 25786 chr18 78077248 + 9724020 9724295 AluYa5 310 + 34 309 100933 275 chain 23174 chr18 78077248 + 9729248 9729537 AluY 311 + 6 296 114788 119 1 2 169 chain 215594 chr18 78077248 + 9767734 9770278 L1PA7 6471 - 17 2594 18130 391 0 15 174 0 4 245 0 4 257 0 1 13 2 3 670 0 8 95 1 0 173 0 5 188 6 1 280 0 1 49 chain 21666 chr18 78077248 + 9778772 9779068 Tigger2 2703 - 55 355 121519 61 10 14 225 chain 7436 chr18 78077248 + 9788995 9789102 L1MA5 2750 + 2555 2659 174539 7 1 0 68 4 3 13 1 0 13 chain 108591 chr18 78077248 + 9794369 9796328 L1PB1 5432 + 3790 5387 34540 26 4 1 116 339 0 29 1 0 195 1 2 192 5 6 106 0 5 123 0 1 29 3 0 77 5 7 276 0 5 117 1 2 10 17 2 21 1 0 4 1 0 15 7 4 7 2 0 30 29 38 45 1 0 7 53 39 5 1 0 14 2 0 24 1 0 17 chain 3147 chr18 78077248 + 9831429 9831462 MER83 447 - 414 447 221996 33 chain 19958 chr18 78077248 + 9853972 9854262 L1PA8 5853 - 0 285 127276 93 1 0 19 2 1 33 0 8 11 18 9 69 2 0 42 chain 44382 chr18 78077248 + 9865446 9866001 THE1B-int 1605 - 1019 1602 63714 135 4 29 343 0 1 61 0 2 12 chain 51105 chr18 78077248 + 9867677 9868691 L1PA8 5853 - 0 724 58246 93 1 0 18 10 9 44 5 2 8 2 1 22 0 1 47 2 0 44 1 0 86 308 28 61 4 2 258 chain 50179 chr18 78077248 + 9903472 9904126 L1PA8 5853 + 5174 5853 58881 171 3 0 219 1 0 44 2 0 88 5 6 38 2 1 13 0 31 68 chain 6883 chr18 78077248 + 9923915 9923999 5S 121 + 0 90 178326 54 0 1 8 0 5 22 chain 25611 chr18 78077248 + 9934823 9935110 AluY 311 + 14 301 101670 287 chain 25344 chr18 78077248 + 9943845 9944140 AluYc3 301 - 0 296 102992 186 1 2 108 chain 12597 chr18 78077248 + 9946404 9946587 MER30 238 + 46 238 149851 62 6 0 12 2 17 101 chain 2980 chr18 78077248 + 9958539 9958575 MER5B 177 - 71 107 225448 36 chain 9352 chr18 78077248 + 9966679 9966840 MER47A 366 + 178 340 163798 108 33 34 20 chain 519373 chr18 78077248 + 9976585 9983268 L1PA6 6164 - 2 6164 5225 4 1 0 135 0 8 10 10 3 170 1 0 819 0 1 5 14 8 350 1 0 345 0 1 606 2 0 2251 3 1 694 513 0 184 1 0 47 0 2 25 13 12 142 6 7 70 1 2 60 1 0 4 0 1 195 chain 42724 chr18 78077248 + 9982026 9982519 MER9a1 513 + 15 513 65745 379 0 5 114 chain 22297 chr18 78077248 + 10000297 10000574 THE1A 353 - 78 353 118922 111 1 0 54 2 1 109 chain 11256 chr18 78077248 + 10024352 10024559 L1MB2 1706 + 1500 1693 155203 54 41 29 15 1 0 10 5 4 81 chain 6481 chr18 78077248 + 10040018 10040093 MER3 215 - 5 80 181382 75 chain 4429 chr18 78077248 + 10053467 10053522 MLT2A2 560 - 0 53 201603 46 2 0 7 chain 11374 chr18 78077248 + 10063926 10064070 L1PA8 5853 - 0 142 154801 92 2 1 16 1 0 33 chain 22896 chr18 78077248 + 10091846 10092116 MER1A 529 + 245 514 116127 212 1 0 57 chain 29972 chr18 78077248 + 10098805 10099118 AluYb8 318 + 0 313 84900 313 chain 4216 chr18 78077248 + 10152959 10153109 MER58A 224 - 8 175 204343 41 85 102 24 chain 374627 chr18 78077248 + 10173570 10178047 L1PA6 6164 - 4 4485 10936 155 1 2 293 18 14 202 0 1 182 0 3 2043 0 1 19 1 0 20 0 1 7 6 4 23 0 1 13 2 0 600 0 2 248 0 1 298 18 20 328 chain 306323 chr18 78077248 + 10178910 10182953 L1PBa1 4058 - 18 4047 13161 42 1 0 17 1 0 9 24 19 12 1 0 15 3 0 7 1 0 4 2 1 19 2 0 11 10 4 14 1 0 13 14 28 83 2 0 41 1 0 32 1 0 4 1 0 116 2 1 113 1 0 82 0 1 40 0 1 409 0 1 20 0 1 185 1 7 132 0 1 664 0 1 4 6 5 214 1 0 205 0 1 6 1 0 271 0 2 293 4 5 221 2 0 32 10 9 30 18 14 206 0 1 42 1 0 97 2 1 174 17 14 6 1 0 26 chain 36196 chr18 78077248 + 10191492 10192002 LTR12F 595 - 0 595 74631 62 0 5 43 14 20 74 2 0 172 0 82 29 10 5 62 0 1 34 2 0 6 chain 14347 chr18 78077248 + 10194304 10194472 L1PA5 6144 + 5975 6144 143389 44 0 1 124 chain 38899 chr18 78077248 + 10219923 10220402 MER9a3 513 - 0 498 70867 77 0 1 160 0 17 147 0 1 95 chain 372708 chr18 78077248 + 10220415 10224807 HERVK9-int 4720 - 0 4386 11004 13 0 1 5 9 8 138 1 0 921 2 1 2075 9 5 292 2 1 616 1 2 308 chain 37665 chr18 78077248 + 10225477 10225955 MER9a3 513 - 0 498 72596 40 1 2 35 0 1 160 0 17 147 0 1 95 chain 14397 chr18 78077248 + 10250477 10250768 L1PA15 4387 - 60 340 143217 12 3 1 44 6 3 50 5 4 6 4 0 22 1 0 22 31 32 27 5 4 53 chain 29305 chr18 78077248 + 10251320 10251637 AluYb8 318 + 0 318 87544 147 0 1 170 chain 164567 chr18 78077248 + 10254490 10256510 L1PA8 5853 - 1827 3857 22733 362 0 4 32 1 2 181 2 0 39 20 21 309 3 7 25 6 0 36 0 1 10 1 0 45 0 1 39 1 0 217 0 5 205 0 4 460 1 0 25 chain 141043 chr18 78077248 + 10256510 10258560 L1PA8 5853 + 4049 5841 25977 10 0 4 151 5 6 120 1 0 375 6 7 55 0 6 216 8 10 336 3 0 219 1 0 46 2 0 64 35 33 33 3 2 9 262 0 9 1 0 54 1 2 25 chain 28870 chr18 78077248 + 10286071 10286516 MER4A1 472 - 0 472 89585 68 7 9 122 42 66 60 3 2 115 1 0 6 1 2 5 0 2 15 chain 22542 chr18 78077248 + 10341276 10341641 THE1B 368 + 0 358 117838 15 2 0 32 0 1 57 29 30 34 30 23 84 1 2 15 1 0 65 chain 16394 chr18 78077248 + 10416579 10416805 MER30 238 - 0 237 137225 111 4 20 13 5 0 93 chain 22870 chr18 78077248 + 10423496 10423796 AluSg 306 + 11 296 116226 23 17 0 91 0 1 4 0 1 165 chain 105523 chr18 78077248 + 10505430 10507404 SVA_B 1603 - 0 1558 35366 504 16 0 15 111 0 30 38 1 18 1 0 9 37 0 12 123 6 18 0 3 35 0 127 39 0 3 86 25 28 35 1 0 5 191 1 72 37 0 359 0 1 72 11 0 46 10 15 18 chain 4988 chr18 78077248 + 10538802 10538867 L1PA8 5853 - 812 883 195269 33 0 2 18 0 4 14 chain 58786 chr18 78077248 + 10538867 10539675 L1PA8 5853 + 5053 5853 53531 12 13 19 61 0 5 224 24 16 174 1 0 21 4 0 24 2 0 70 1 0 14 1 0 47 2 1 19 1 0 93 chain 25910 chr18 78077248 + 10571145 10571448 AluSc 308 - 5 308 100369 303 chain 550650 chr18 78077248 + 10572665 10578675 L1PA2 6032 - 0 6030 1353 1802 0 4 142 0 3 936 0 4 97 0 1 1347 1 0 952 0 1 39 0 7 385 0 1 309 chain 18367 chr18 78077248 + 10583908 10584127 AluY 311 + 16 293 131884 117 0 58 102 chain 29140 chr18 78077248 + 10588257 10588574 AluYb8 318 - 1 318 88364 317 chain 9354 chr18 78077248 + 10597416 10597526 AluYf4 310 + 176 287 163785 30 1 2 79 chain 252288 chr18 78077248 + 10599601 10602695 Harlequin-int 5206 - 1767 4837 16117 133 2 0 552 11 12 244 32 14 222 2 1 209 0 2 491 1 2 268 1 0 115 2 1 162 1 0 449 0 2 11 0 2 64 10 2 112 chain 36880 chr18 78077248 + 10603732 10604198 LTR2 463 - 0 463 73682 88 12 13 239 20 16 107 chain 40410 chr18 78077248 + 10606312 10606775 LTR2 463 + 0 463 68719 463 chain 20146 chr18 78077248 + 10642406 10642633 L1PA4 6152 + 5908 6140 126688 90 0 5 137 chain 57609 chr18 78077248 + 10648926 10649996 L1PA13 3608 + 89 1119 54179 20 6 4 23 22 19 8 1 0 14 3 0 13 1 3 9 31 16 71 7 5 103 20 19 11 1 0 8 2 0 10 2 0 16 7 3 17 1 0 17 2 0 15 23 19 11 0 1 7 8 7 69 6 4 67 13 0 8 19 37 127 14 13 52 5 4 180 chain 514937 chr18 78077248 + 10650015 10656100 L1PA5 6144 + 0 6134 5679 19 0 1 101 0 14 448 0 10 29 0 4 23 0 8 23 0 3 109 18 36 10 1 0 237 1 4 90 9 0 240 0 5 19 1 0 308 1 0 572 9 1 606 0 1 682 0 1 83 6 0 377 1 3 274 0 4 926 0 4 19 1 0 597 1 0 104 5 4 135 chain 21720 chr18 78077248 + 10675682 10676052 THE1B 368 + 0 368 121314 78 22 23 12 0 1 5 8 0 50 1 0 20 18 25 14 6 5 9 1 0 126 chain 28852 chr18 78077248 + 10688000 10688382 L1PA8 5853 - 0 375 89661 90 4 3 21 1 0 51 1 0 9 1 0 71 2 0 44 1 0 86 chain 25734 chr18 78077248 + 10699288 10699643 THE1B 368 + 0 368 101149 24 1 5 15 0 15 109 1 0 23 7 3 92 2 1 81 chain 25126 chr18 78077248 + 10796080 10796382 AluY 311 + 0 297 104146 125 6 1 171 chain 6849 chr18 78077248 + 10861474 10861733 L1MA7 2200 + 1875 2101 178586 71 138 104 26 9 10 15 chain 6455 chr18 78077248 + 10869381 10869456 L1PA8 5853 + 5771 5846 181599 75 chain 4693 chr18 78077248 + 10886435 10886489 MSTA 426 - 370 424 198595 54 chain 7815 chr18 78077248 + 10887415 10887542 MSTA 426 - 282 426 172215 12 20 37 95 chain 27274 chr18 78077248 + 10890397 10890770 THE1C 375 - 0 375 95357 25 1 0 23 0 3 116 22 22 186 chain 9603 chr18 78077248 + 10897534 10897697 THE1B 368 + 195 368 162584 5 1 0 13 18 30 61 2 0 6 1 2 56 chain 18480 chr18 78077248 + 10898209 10898429 AluY 311 + 72 293 131555 60 1 2 159 chain 24970 chr18 78077248 + 10905298 10905597 AluSp 311 + 0 300 104953 37 1 0 238 0 2 23 chain 4076 chr18 78077248 + 10908971 10909048 MER58A 224 + 27 116 206254 42 10 24 7 2 0 16 chain 13252 chr18 78077248 + 10915876 10916090 LTR12C 1709 - 782 1059 147280 89 2 1 23 1 79 59 19 5 21 chain 83803 chr18 78077248 + 10921286 10922326 MER11C 1089 + 0 1063 41986 225 0 5 16 0 9 58 0 4 68 1 0 303 0 4 45 0 1 127 7 8 190 chain 48886 chr18 78077248 + 10939327 10939931 L1PA8 5853 + 5256 5853 59816 308 2 1 43 2 0 72 1 0 14 5 4 45 1 0 17 1 0 93 chain 5574 chr18 78077248 + 10946801 10946932 L1MDb 1215 + 721 851 189329 23 53 52 55 chain 57607 chr18 78077248 + 10966659 10968511 L1PB1 5432 - 28 1519 54180 12 1 0 19 1 0 27 2 0 14 1 0 5 7 5 17 16 5 4 1 0 16 1 0 44 1 0 15 2 1 52 18 12 12 8 6 24 1 0 4 944 607 98 0 6 230 6 5 197 5 7 47 chain 7093 chr18 78077248 + 10982217 10982307 MLT2A2 560 - 11 101 176812 90 chain 191418 chr18 78077248 + 10991232 10993507 L1PA7 6471 - 3 2300 19919 368 0 1 478 1 0 468 0 3 201 1 0 187 0 1 81 0 4 264 0 15 226 chain 23925 chr18 78077248 + 10995117 10995449 L1PB1 5432 - 600 933 110778 26 2 1 127 0 3 48 2 0 40 7 8 80 chain 108288 chr18 78077248 + 11022771 11024194 LTR12C 1709 - 2 1709 34620 82 7 6 201 1 0 188 13 6 105 9 166 86 0 118 207 14 16 57 4 5 174 4 0 9 4 8 10 0 1 229 1 15 18 chain 6683 chr18 78077248 + 11044757 11044856 MER82 654 + 83 184 179808 39 1 4 53 1 0 5 chain 469965 chr18 78077248 + 11058120 11063441 L1PA4 6152 + 804 6152 8038 173 0 14 17 0 12 23 12 14 429 0 19 1658 0 1 446 0 1 161 0 1 732 2 0 1303 23 2 342 chain 18633 chr18 78077248 + 11090688 11090931 AluY 311 + 60 301 131125 47 1 2 18 1 0 39 1 0 44 7 6 85 chain 30618 chr18 78077248 + 11127307 11127694 MLT2A1 477 + 0 395 83173 142 0 1 19 0 11 212 4 0 10 chain 450063 chr18 78077248 + 11127864 11133401 HERVL-int 5654 + 0 5654 8765 432 0 1 271 7 8 661 0 46 305 6 8 218 0 1 850 52 47 114 1 10 85 0 1 153 3 4 95 4 5 629 0 4 144 0 12 436 19 17 338 0 3 119 20 50 275 11 10 60 0 5 124 0 1 4 1 0 22 2 0 31 0 10 45 chain 29468 chr18 78077248 + 11133401 11133787 MLT2A1 477 + 0 384 86767 92 7 0 50 0 1 25 1 5 211 chain 47060 chr18 78077248 + 11181517 11182062 L1PA7 6471 - 2 547 61156 545 chain 26911 chr18 78077248 + 11217489 11217776 AluYa5 310 - 4 291 96595 287 chain 23562 chr18 78077248 + 11226579 11226866 L1PA5 6144 - 0 289 112784 169 4 6 114 chain 32533 chr18 78077248 + 11248287 11248768 LTR12F 595 + 0 571 79968 103 12 113 30 4 3 9 23 5 59 1 2 85 7 14 148 chain 29904 chr18 78077248 + 11259047 11259365 AluYb8 318 + 0 318 85080 318 chain 77083 chr18 78077248 + 11263790 11264827 MER11A 1151 - 0 1151 44924 60 10 9 165 10 19 36 3 0 59 0 2 179 0 1 52 0 1 9 17 23 95 0 1 51 0 1 60 0 2 26 12 8 138 0 99 55 chain 4314 chr18 78077248 + 11273974 11274036 LTR62 707 + 358 419 203041 37 3 2 22 chain 17515 chr18 78077248 + 11275653 11275849 L1PA4 6152 + 5949 6146 134222 71 0 1 125 chain 3298 chr18 78077248 + 11331216 11331253 Tigger4 2445 - 88 125 219027 37 chain 21381 chr18 78077248 + 11334164 11334441 L1PA7 6471 - 6 308 122581 6 3 0 159 3 31 106 chain 6717 chr18 78077248 + 11341890 11342169 MER4E 760 - 0 280 58007 146 1 0 111 0 2 21 chain 70695 chr18 78077248 + 11342173 11343213 MER11A 1151 - 0 1151 48067 163 6 7 60 0 1 36 18 0 22 28 61 111 5 6 140 0 7 8 6 0 10 0 1 73 3 5 106 0 2 38 4 0 66 2 1 49 8 0 23 1 100 17 0 1 37 chain 19598 chr18 78077248 + 11343213 11344027 MER4E 760 - 280 654 58007 53 0 1 160 0 1 30 1 0 75 1 0 4 442 2 48 chain 120872 chr18 78077248 + 11344042 11345456 SVA_B 1603 + 0 1603 30739 22 8 27 580 1 9 34 0 40 112 0 124 649 2 0 6 chain 358372 chr18 78077248 + 11349733 11354806 L1PB1 5432 + 17 5061 11395 9 6 0 215 2 0 9 25 43 16 7 6 130 2 0 15 81 21 86 1 0 5 0 1 37 1 5 39 8 9 103 4 3 467 1 3 89 24 25 27 31 31 208 0 5 215 0 4 21 2 1 9 0 1 152 0 1 43 9 10 65 0 1 242 28 7 101 1 2 108 0 1 208 22 19 312 0 1 338 0 5 59 9 8 161 12 13 22 6 7 260 0 1 41 0 1 30 13 14 56 0 4 20 1 2 16 0 1 414 0 1 190 2 1 179 0 11 58 chain 22216 chr18 78077248 + 11409965 11410234 AluSg7 307 + 20 293 119282 106 0 1 13 0 1 132 0 2 18 chain 18929 chr18 78077248 + 11420195 11420424 L1PA5 6144 + 5892 6140 130293 35 0 9 59 0 10 11 0 1 109 1 0 14 chain 27119 chr18 78077248 + 11439445 11439819 MER4A1 472 - 77 472 95872 143 15 36 18 4 5 123 1 0 70 chain 39489 chr18 78077248 + 11444031 11444492 L1PA5 6144 - 0 460 70031 259 1 0 201 chain 23734 chr18 78077248 + 11445166 11445446 L1P3 4156 - 943 1223 111863 280 chain 28824 chr18 78077248 + 11446556 11446861 AluYa5 310 - 4 309 89788 305 chain 45021 chr18 78077248 + 11450414 11451066 L1PA16 3655 + 2931 3587 63035 37 16 18 76 0 6 56 4 3 77 1 0 87 2 0 18 6 8 194 0 1 67 3 0 8 chain 33030 chr18 78077248 + 11455946 11456350 L1PA4 6152 + 5741 6152 79168 149 4 5 143 0 1 102 0 5 6 chain 6489 chr18 78077248 + 11457638 11457724 MADE1 96 - 4 91 181337 46 0 1 40 chain 525328 chr18 78077248 + 11473189 11479870 L1PA7 6471 - 6 6468 4654 142 42 43 218 4 0 438 0 3 1058 251 0 469 1 2 89 0 1 372 0 1 327 3 4 603 2 1 62 10 8 101 3 5 1106 7 0 193 0 1 388 10 27 247 1 0 82 0 1 63 1 2 243 1 0 38 1 18 33 0 1 72 chain 72840 chr18 78077248 + 11536119 11537144 MER11C 1089 - 26 1089 47103 143 1 0 18 0 19 19 0 1 125 0 1 29 13 18 75 82 83 145 2 1 69 0 4 58 0 9 246 chain 22814 chr18 78077248 + 11560348 11560716 MSTB 430 - 37 423 116511 18 29 30 55 6 16 61 6 12 70 8 9 115 chain 19921 chr18 78077248 + 11596497 11596722 AluY 311 + 64 288 127394 59 1 0 165 chain 11399 chr18 78077248 + 11600837 11600975 L1PREC2 3366 + 2358 2496 154704 138 chain 13879 chr18 78077248 + 11608305 11608587 L1PB1 5432 - 13 271 144985 15 15 14 20 1 0 24 2 0 14 8 5 19 29 17 11 1 0 44 1 0 15 2 1 53 2 0 6 chain 62957 chr18 78077248 + 11608716 11609424 SVA_C 1631 + 913 1622 51466 37 1 0 52 1 2 209 1 2 407 chain 13341 chr18 78077248 + 11611471 11611652 MER2 342 + 156 338 146930 138 5 6 38 chain 7912 chr18 78077248 + 11613398 11613489 SVA_F 1814 + 375 466 171572 91 chain 83952 chr18 78077248 + 11613516 11614795 SVA_A 1864 + 519 1648 41926 93 52 10 13 79 0 16 3 0 39 2 0 37 2 0 35 40 0 75 3 0 37 3 0 13 1 0 22 5 39 39 2 0 69 3 0 38 19 16 34 1 0 504 chain 3390 chr18 78077248 + 11613674 11613729 SVA_A 1864 + 443 498 57573 55 chain 14993 chr18 78077248 + 11614822 11614999 AluSp 311 + 115 293 141339 71 0 1 106 chain 23959 chr18 78077248 + 11626350 11626646 AluSp 311 + 5 301 110572 296 chain 3247 chr18 78077248 + 11644159 11644193 MER83B 357 + 97 131 220071 34 chain 13341 chr18 78077248 + 11645690 11645871 MER2 342 + 156 338 146929 138 5 6 38 chain 56046 chr18 78077248 + 11647389 11648517 SVA_B 1603 + 423 1387 55092 17 5 6 35 0 2 38 2 0 35 1 0 22 43 3 25 3 40 107 12 10 59 1 4 6 3 0 23 15 99 16 97 20 7 2 0 35 77 0 35 71 0 33 20 4 283 chain 2097 chr18 78077248 + 11647544 11647582 SVA_B 1603 + 811 849 162583 38 chain 119131 chr18 78077248 + 11690468 11691756 L1PA3long 6157 - 8 1296 31367 1288 chain 94033 chr18 78077248 + 11716180 11717467 LTR12C 1709 - 0 1709 38341 84 14 13 48 0 101 235 0 4 106 12 169 102 0 118 152 8 7 44 0 1 33 7 8 103 0 43 45 17 4 8 0 4 53 25 33 191 chain 11749 chr18 78077248 + 11730020 11730157 AluYk4 311 - 0 137 153262 137 chain 24670 chr18 78077248 + 11768317 11768611 AluSp 311 + 0 293 106603 70 1 0 223 chain 3384 chr18 78077248 + 11773965 11774001 MIR 256 + 112 148 217382 36 chain 24932 chr18 78077248 + 11787589 11787886 AluY 311 + 0 296 105147 23 2 0 109 0 1 163 chain 33412 chr18 78077248 + 11842313 11842775 MER1A 529 - 1 470 78543 64 4 5 49 0 5 303 19 20 23 chain 12872 chr18 78077248 + 11878964 11879108 L1PA5 6144 + 5993 6137 148740 144 chain 13861 chr18 78077248 + 11903835 11904041 MER50B 698 + 460 666 145032 21 3 2 60 1 3 66 6 5 49 chain 24043 chr18 78077248 + 11906573 11906871 AluSp 311 + 0 300 110097 52 5 6 80 6 7 155 chain 3321 chr18 78077248 + 11922420 11922459 MER82 654 + 149 188 218551 39 chain 13626 chr18 78077248 + 11924490 11924768 Tigger3 1187 + 623 906 145880 39 88 90 46 1 0 54 0 3 43 0 1 7 chain 15747 chr18 78077248 + 11935069 11935256 AluY 311 + 8 196 139117 124 0 1 63 chain 37299 chr18 78077248 + 11941665 11942106 MER41A 554 + 0 441 73081 441 chain 41738 chr18 78077248 + 11956638 11957182 LTR10A 586 + 0 586 66977 210 0 30 18 30 42 286 chain 135387 chr18 78077248 + 11959058 11960659 SVA_D 2077 + 46 2077 26941 6 1 0 5 3 0 411 76 0 449 0 489 517 0 20 86 0 1 47 chain 1248 chr18 78077248 + 11959484 11959541 SVA_D 2077 + 624 681 157401 57 chain 3382 chr18 78077248 + 11975155 11975194 MLT1B 390 - 79 118 217433 39 chain 25880 chr18 78077248 + 11979564 11979866 AluSc 308 - 6 308 100528 302 chain 3102 chr18 78077248 + 11992180 11992213 MLT2B4 540 - 507 540 222902 33 chain 12541 chr18 78077248 + 12112132 12112326 L1PA13 3608 + 3281 3467 150077 55 1 0 51 1 0 5 6 4 48 2 0 4 2 0 19 chain 59672 chr18 78077248 + 12134375 12135050 L1PA5 6144 - 0 677 53006 470 0 2 205 chain 541409 chr18 78077248 + 12135054 12141449 L1PA4 6152 - 12 6114 2603 1680 4 0 276 0 1 743 0 3 1015 0 3 590 303 0 1166 7 0 507 0 14 21 1 0 5 0 1 77 chain 29315 chr18 78077248 + 12166737 12167102 L1PA6 6164 - 11 377 87462 136 1 2 228 chain 507214 chr18 78077248 + 12167139 12173233 L1PA6 6164 - 2 6164 6384 608 0 3 61 7 9 166 3 0 785 1 0 4 0 1 155 0 2 280 0 2 340 1 0 239 0 4 313 0 1 855 6 0 574 1 0 324 8 13 465 0 25 109 0 16 14 0 1 151 4 12 48 0 10 62 2 1 303 37 38 168 chain 63535 chr18 78077248 + 12173253 12174323 L1PA13 3608 - 2489 3519 51232 376 26 31 81 3 1 75 5 4 7 0 1 11 23 19 15 2 0 17 1 0 18 6 2 16 2 0 10 2 0 8 1 0 11 20 19 106 2 0 73 31 18 7 2 0 16 3 0 14 1 0 19 11 8 23 12 10 14 chain 20588 chr18 78077248 + 12180806 12181039 L1PA4 6152 - 12 250 125340 137 0 5 96 chain 553136 chr18 78077248 + 12181636 12187770 L1PA3long 6157 + 1 6149 1053 5 3 0 467 0 4 568 0 1 436 1 0 1653 0 4 1189 0 4 21 0 4 132 0 1 1659 chain 556244 chr18 78077248 + 12202443 12208457 L1PA2 6032 - 1 6031 695 3235 0 12 1172 0 4 1607 chain 40410 chr18 78077248 + 12228820 12229283 LTR2 463 - 0 463 68721 463 chain 104887 chr18 78077248 + 12242928 12244175 SVA_A 1864 + 10 1864 35532 164 4 3 226 0 566 157 21 60 108 0 3 567 chain 40657 chr18 78077248 + 12249821 12250281 L1PA3long 6157 + 5439 5898 68354 208 0 1 68 1 0 93 0 3 35 4 0 51 chain 24076 chr18 78077248 + 12250281 12250539 L1PA3long 6157 + 5899 6157 109895 258 chain 22796 chr18 78077248 + 12339573 12339869 AluY 311 + 1 304 116592 46 4 10 20 1 2 225 chain 10522 chr18 78077248 + 12349146 12349490 L1MB7 1623 + 1108 1428 158155 59 70 58 11 23 12 16 40 39 20 1 0 14 1 0 15 21 24 47 1 0 5 chain 18465 chr18 78077248 + 12381032 12381270 AluSp 311 + 17 256 131594 22 18 19 198 chain 21410 chr18 78077248 + 12382606 12382891 AluY 311 + 0 292 122472 32 0 7 84 1 0 9 10 11 149 chain 25726 chr18 78077248 + 12383535 12383833 AluSp 311 - 2 300 101189 298 chain 22878 chr18 78077248 + 12387415 12387676 AluYc 301 + 19 288 116193 101 0 2 120 0 6 40 chain 8932 chr18 78077248 + 12398564 12398683 MER85 139 - 2 131 165968 37 1 11 81 chain 24789 chr18 78077248 + 12439532 12439821 AluSp 311 - 21 310 105950 289 chain 8458 chr18 78077248 + 12534643 12534773 Ricksha_c 1012 + 416 544 168527 22 16 14 92 chain 25069 chr18 78077248 + 12539156 12539503 THE1B 368 + 0 368 104464 44 0 15 115 1 0 128 22 29 37 chain 33832 chr18 78077248 + 12552466 12552902 LTR2 463 + 0 463 77887 55 1 4 103 9 29 169 11 15 88 chain 28304 chr18 78077248 + 12554830 12555218 LOR1a 498 + 47 430 91926 104 0 2 48 8 7 4 0 1 107 0 1 35 0 1 34 1 0 32 8 0 7 chain 134685 chr18 78077248 + 12555362 12560557 L1MA3 4352 + 1776 4053 27077 537 1 0 24 15 10 19 0 4 125 0 3 18 0 7 61 2 0 77 1 0 66 1 0 79 3255 315 130 16 21 66 1 2 56 6 7 123 1 6 33 0 4 115 19 21 348 chain 5960 chr18 78077248 + 12556992 12558835 LTR12C 1709 - 832 1059 185601 40 1575 0 38 161 120 29 chain 4791 chr18 78077248 + 12565193 12565263 L1MCa 1829 + 1244 1317 197448 39 7 10 24 chain 3069 chr18 78077248 + 12574055 12574229 L1MC2 1988 + 1848 1988 223583 17 126 92 31 chain 21855 chr18 78077248 + 12576617 12576873 AluSc8 310 + 11 270 120801 121 0 3 135 chain 3265 chr18 78077248 + 12607779 12607868 L1MA3 4352 + 4220 4310 219679 16 26 27 17 1 2 6 1 0 22 chain 151219 chr18 78077248 + 12627077 12628869 L1PA6 6164 - 2 1824 24445 93 0 11 37 5 6 276 0 2 132 0 3 286 0 4 287 1 0 39 0 6 476 1 0 102 1 2 34 0 4 22 chain 17332 chr18 78077248 + 12642681 12642930 L1PA8 5853 + 5609 5853 134704 70 1 0 9 10 8 44 2 1 19 1 0 93 chain 24184 chr18 78077248 + 12669727 12670022 AluSp 311 + 10 310 109300 115 0 3 147 0 2 33 chain 3605 chr18 78077248 + 12714045 12714088 LTR45C 530 - 472 517 213574 15 0 2 28 chain 23745 chr18 78077248 + 12720882 12721194 AluY 311 + 0 300 111803 69 15 0 63 0 1 133 0 2 32 chain 41275 chr18 78077248 + 12728044 12728639 L1PB2 3958 + 3239 3838 67568 22 0 4 37 4 5 53 0 3 8 1 0 23 0 1 43 2 0 13 2 0 31 13 17 46 4 2 71 1 0 56 0 1 5 1 0 95 1 0 63 chain 7697 chr18 78077248 + 12741711 12741807 L1MB7 1623 - 457 553 172950 96 chain 31828 chr18 78077248 + 12753986 12754417 MLT2A1 477 - 0 477 81124 20 1 0 28 0 46 20 14 5 185 1 5 29 0 1 25 0 1 91 0 4 17 chain 351258 chr18 78077248 + 12754417 12759576 HERVL-int 5654 - 0 4338 11561 823 0 6 4 6 0 171 0 80 145 4 0 149 1 0 249 592 3 337 10 9 620 0 1 159 324 0 549 0 3 12 6 8 160 1 2 55 0 2 215 1 2 149 0 4 130 0 4 287 chain 8169 chr18 78077248 + 12760715 12760811 HY3 101 + 0 96 170120 96 chain 9966 chr18 78077248 + 12762788 12762937 MER4A1_ 611 + 428 576 160748 90 0 1 17 19 17 23 chain 3116 chr18 78077248 + 12776258 12776292 LTR12C 1709 - 992 1026 222627 34 chain 2762 chr18 78077248 + 12776327 12776380 LTR12C 1709 - 865 954 229303 7 1 0 27 6 43 12 chain 13075 chr18 78077248 + 12776588 12776756 LTR12C 1709 - 562 777 147934 28 4 51 136 chain 21421 chr18 78077248 + 12808505 12808782 AluSc8 310 + 8 291 122441 122 13 15 107 0 4 35 chain 24940 chr18 78077248 + 12850743 12851038 AluSp 311 - 17 311 105109 163 1 0 131 chain 30101 chr18 78077248 + 12851196 12851513 AluYb8 318 + 0 317 84489 317 chain 18493 chr18 78077248 + 12866725 12866994 AluSc8 310 + 0 271 131524 53 2 6 64 1 0 9 0 3 5 8 5 7 0 3 92 0 1 3 5 0 20 chain 170624 chr18 78077248 + 12873244 12875323 SVA_D 2077 + 0 2077 21976 14 0 3 14 11 0 563 0 40 128 40 0 154 9 46 72 8 10 129 0 20 31 0 1 109 51 0 54 0 1 4 9 8 365 1 0 304 2 0 7 chain 3451 chr18 78077248 + 12874526 12874577 SVA_D 2077 + 1207 1256 78744 6 2 0 43 chain 6461 chr18 78077248 + 12890554 12890698 LTR41 747 + 0 147 181549 20 40 42 66 6 7 12 chain 24953 chr18 78077248 + 12894527 12894827 AluSp 311 - 9 311 105039 22 1 3 277 chain 73833 chr18 78077248 + 12919275 12921087 L1PB1 5432 + 4305 5419 46602 80 316 0 96 0 1 89 0 1 42 10 7 32 1 0 102 13 0 16 0 3 28 6 5 72 0 1 91 1 2 10 1 2 118 64 15 20 4 3 5 1 0 10 2 0 3 2 0 10 3 1 50 2 1 15 1 0 39 6 5 13 17 4 30 307 13 8 2 0 22 1 0 22 1 0 12 3 2 13 chain 3580 chr18 78077248 + 12939120 12939169 MLT1B 390 + 322 372 213983 18 1 2 30 chain 147520 chr18 78077248 + 12979075 12981518 SVA_D 2077 - 7 1841 24958 633 0 49 191 370 0 159 2 4 87 11 0 30 357 1 94 40 0 73 0 77 22 0 40 374 chain 6031 chr18 78077248 + 12979899 12979980 SVA_D 2077 - 1107 1350 135841 9 0 162 72 chain 3271 chr18 78077248 + 12980119 12980248 SVA_D 2077 - 538 667 133927 129 chain 27082 chr18 78077248 + 12980558 12980915 SVA_D 2077 - 719 1076 57551 139 1 0 181 0 1 36 chain 36125 chr18 78077248 + 12997222 12997712 LTR15 485 - 10 485 74733 7 0 4 7 0 1 17 0 2 40 21 3 48 5 1 7 0 1 100 0 1 4 9 7 225 chain 28633 chr18 78077248 + 13031242 13031545 AluYa5 310 - 7 310 90593 303 chain 28391 chr18 78077248 + 13035268 13035625 THE1A 353 - 0 353 91612 155 2 0 88 1 0 65 1 0 45 chain 63801 chr18 78077248 + 13063534 13065173 L1MA1 4479 - 289 1320 51097 18 7 0 13 5 3 5 1 0 9 3 2 33 2 0 29 1 0 121 8 5 5 1 0 24 302 0 64 1 0 14 2 0 19 1 0 71 1 0 16 2 0 11 312 0 14 1 0 152 0 1 43 3 0 17 0 53 59 3 0 78 11 6 21 0 1 20 5 0 12 13 12 61 6 0 19 chain 10213 chr18 78077248 + 13067094 13067255 MER2 342 + 81 249 159551 28 1 0 25 0 1 48 18 25 41 chain 8332 chr18 78077248 + 13075575 13075711 MLT1A1 405 + 256 403 169212 22 8 17 18 0 1 53 8 9 27 chain 3382 chr18 78077248 + 13077336 13077376 Tigger4a 237 - 188 228 217442 40 chain 12590 chr18 78077248 + 13077944 13078625 L1PA7 6471 - 10 693 23227 9 1 0 267 0 3 404 chain 519045 chr18 78077248 + 13078649 13084756 L1PA6 6164 - 13 6164 5261 158 3 1 365 0 1 228 1 0 154 1 2 351 0 1 201 11 10 1033 2 0 139 0 4 92 0 1 345 0 32 608 15 16 75 16 0 483 1 2 247 0 1 134 0 4 10 0 1 7 0 1 628 1 18 333 1 0 400 1 2 63 chain 28082 chr18 78077248 + 13085123 13086642 L1PA7 6471 - 726 6471 23227 44 1 3 70 1 5 55 8 1 57 0 3 87 0 1 227 0 1 236 4 0 102 0 14 160 1 3 67 1 3 201 1 4209 196 chain 138526 chr18 78077248 + 13097648 13099213 SVA_D 2077 - 4 2073 26391 618 0 1 15 0 1 32 1 490 851 1 26 13 13 1 21 chain 16737 chr18 78077248 + 13134375 13134595 LTR12C 1709 - 494 777 136294 58 1 48 16 0 1 7 2 17 136 chain 4818 chr18 78077248 + 13138130 13138218 MER51A 677 - 333 501 197147 26 1 92 27 11 0 23 chain 19988 chr18 78077248 + 13152876 13153141 L1MA4 2864 - 1778 2047 127174 217 1 5 47 chain 391272 chr18 78077248 + 13166246 13172251 L1PB1 5432 + 22 5422 10417 117 0 1 158 7 6 196 4 5 47 0 1 259 10 7 497 0 5 69 5 6 7 5 0 6 0 1 469 0 1 41 12 33 101 0 2 233 322 0 25 4 5 25 3 0 30 0 4 71 1 0 4 0 1 44 2 0 29 4 0 10 0 5 17 10 8 22 0 5 241 18 14 279 0 1 21 6 0 48 0 1 184 1 0 4 9 11 93 0 1 105 1 4 81 5 0 6 4 9 29 1 0 5 8 0 319 5 6 273 0 1 294 5 2 128 297 15 27 1 0 5 1 7 7 8 0 110 0 9 169 0 1 8 6 3 22 3 2 4 1 0 11 8 4 9 2 0 44 24 25 44 1 0 5 60 49 11 2 0 6 0 1 8 0 1 8 1 0 21 1 0 31 chain 16971 chr18 78077248 + 13174182 13174473 MER87B 500 + 8 271 135666 197 45 20 13 16 13 20 chain 146841 chr18 78077248 + 13209810 13211518 L1PA5 6144 + 4402 6144 25039 20 1 0 389 0 37 297 0 1 237 1 0 162 10 8 591 chain 5386 chr18 78077248 + 13257681 13257772 MER20 218 + 40 129 191131 43 4 0 6 8 10 30 chain 26403 chr18 78077248 + 13281870 13282214 THE1A 353 - 0 346 98397 72 1 0 171 1 0 74 7 11 18 chain 128011 chr18 78077248 + 13282226 13283772 THE1A-int 1579 - 5 1579 28563 588 0 27 565 0 1 393 chain 13742 chr18 78077248 + 13283792 13283993 THE1A 353 - 20 229 145463 36 1 2 78 17 17 26 0 7 43 chain 8233 chr18 78077248 + 13284014 13284114 THE1A 353 - 253 353 169765 100 chain 10475 chr18 78077248 + 13294031 13294169 MER85 139 - 0 139 158364 34 8 9 96 chain 23755 chr18 78077248 + 13315510 13315803 AluSp 311 + 0 302 111742 20 1 10 272 chain 538112 chr18 78077248 + 13343092 13349217 L1PA4 6152 - 9 6148 3132 110 1 2 648 0 1 758 0 1 156 0 1 973 0 4 208 2 1 243 0 1 151 0 2 563 0 6 2033 2 0 277 chain 148654 chr18 78077248 + 13349629 13351563 L1PA8 5853 - 1 1933 24794 91 5 4 16 2 1 52 27 25 53 2 0 46 1 0 170 2 5 305 0 1 72 22 9 46 0 11 282 0 1 471 0 2 269 chain 63539 chr18 78077248 + 13351571 13352327 L1PA8 5853 + 3148 3908 51227 43 0 4 713 chain 13945 chr18 78077248 + 13444356 13444537 Tigger2b_Pri 1066 + 819 1002 144775 16 1 0 5 0 3 159 chain 66605 chr18 78077248 + 13468276 13469010 L1PA4 6152 + 5418 6152 49827 734 chain 4482 chr18 78077248 + 13469077 13469248 L1MB4 1306 + 723 892 200989 26 14 0 8 36 51 4 1 0 32 26 25 18 1 0 5 chain 16608 chr18 78077248 + 13506577 13506787 Tigger1 2417 + 908 1123 136645 131 0 5 79 chain 2738 chr18 78077248 + 13548087 13548141 MER52A 1651 - 715 761 229651 20 14 6 20 chain 63525 chr18 78077248 + 13575096 13576070 L1PB1 5432 - 10 949 51237 18 1 0 13 2 1 20 1 0 24 2 0 5 18 15 18 16 6 6 2 0 16 6 5 39 2 1 14 2 1 48 0 4 9 2 0 3 2 0 10 10 8 23 5 0 8 1 4 172 4 0 115 1 9 15 8 0 12 0 1 153 5 0 143 chain 5930 chr18 78077248 + 13587204 13587277 MER5A 189 - 116 189 185888 73 chain 49849 chr18 78077248 + 13607438 13608072 L1PA8 5853 - 0 625 59119 93 1 0 19 3 2 41 1 0 4 3 1 14 3 2 69 2 0 44 1 0 336 chain 14171 chr18 78077248 + 13608072 13608254 L1PA8 5853 + 5000 5178 143982 7 0 2 78 6 0 91 chain 24304 chr18 78077248 + 13640011 13640309 AluY 311 + 8 300 108635 121 6 0 171 chain 46143 chr18 78077248 + 13656680 13657196 HERV17-int 4347 + 3828 4347 61902 333 0 3 183 chain 27747 chr18 78077248 + 13657510 13657837 LTR17 781 + 0 326 93873 39 2 0 165 0 1 121 chain 22647 chr18 78077248 + 13670732 13671001 AluSp 311 + 22 288 117342 30 1 0 73 2 0 163 chain 7469 chr18 78077248 + 13671169 13671283 LTR9B 643 + 451 562 174351 61 0 7 6 11 1 36 chain 33936 chr18 78077248 + 13676932 13677712 LTR2 463 - 0 463 77720 133 316 0 97 38 23 49 0 5 8 0 6 84 0 3 55 chain 6818 chr18 78077248 + 13687993 13688118 LTR59 565 + 153 259 178812 37 7 8 8 20 0 53 chain 512171 chr18 78077248 + 13689802 13695858 L1PA5 6144 + 0 6131 5955 135 9 35 151 0 3 668 0 1 61 4 7 85 0 2 21 9 0 266 13 5 7 0 8 379 0 4 468 2 0 35 1 6 274 9 5 225 0 7 143 0 1 174 1 0 310 0 4 518 0 12 4 0 1 235 2 1 17 0 8 245 3 6 48 0 6 702 1 5 682 4 5 18 0 1 127 chain 181320 chr18 78077248 + 13704740 13707616 MER57-int 2662 + 103 2661 20869 5 0 1 29 0 2 23 0 3 21 0 2 5 0 3 69 0 2 16 1 7 22 3 1 178 0 1 191 9 5 160 316 7 206 0 21 286 0 2 33 1 0 41 8 0 190 1 4 270 3 0 29 2 1 379 15 14 7 0 5 65 0 1 4 1 0 10 18 12 37 5 0 31 14 2 11 2 0 20 26 22 24 1 0 6 14 9 27 3 0 31 2 0 5 chain 27105 chr18 78077248 + 13743041 13743331 AluYg6 310 + 0 290 95927 290 chain 106516 chr18 78077248 + 13750822 13752101 L1PA6 6164 + 4862 6137 35114 310 13 7 133 0 4 80 4 5 323 1 0 273 2 0 140 chain 6821 chr18 78077248 + 13772015 13772095 MSTB1 431 + 334 414 178786 80 chain 48636 chr18 78077248 + 13786055 13786596 L1PA4 6152 - 0 543 60001 6 0 2 535 chain 176830 chr18 78077248 + 13794318 13796310 L1PA5 6144 - 1 1982 21270 10 10 0 846 9 8 1117 chain 6447 chr18 78077248 + 13805360 13805437 L1PA16 3655 + 3465 3542 181659 77 chain 57966 chr18 78077248 + 13805999 13806745 MER4E 760 - 0 756 53992 23 0 2 300 2 1 62 1 3 79 0 4 106 26 29 147 chain 30076 chr18 78077248 + 13808588 13809106 MER4A1_ 611 + 0 611 84578 125 0 4 39 97 18 33 0 148 13 18 36 53 0 2 140 chain 26906 chr18 78077248 + 13835070 13835438 MER1A 529 - 74 480 96606 279 8 5 26 24 65 31 chain 45545 chr18 78077248 + 13835895 13836393 L1HS 6032 + 5535 6032 62462 129 1 0 368 chain 501560 chr18 78077248 + 13857288 13863671 L1PA7 6471 - 3 6471 6751 597 5 1 160 1 0 31 8 10 48 1 0 901 0 9 43 0 1 485 0 1 345 0 1 287 0 4 6 1 2 39 1 0 11 1 2 767 0 5 80 3 1 850 0 1 43 1 3 28 24 34 78 6 9 215 1 0 4 0 1 79 15 34 33 3 7 10 0 1 298 20 20 122 14 19 165 3 0 78 0 2 24 1 0 69 3 4 143 0 7 6 0 1 55 20 35 87 5 1 43 1 7 15 chain 21775 chr18 78077248 + 13865946 13866209 AluY 311 + 38 298 121112 88 3 0 172 chain 227726 chr18 78077248 + 13899658 13903008 L1MA1 4479 + 290 4172 17438 63 1 2 28 5 7 5 2 0 255 1 9 9 4 0 40 8 10 26 0 1 198 0 2 6 0 3 5 10 4 32 1 12 118 0 1 162 4 8 74 0 2 38 0 1 195 1 0 4 0 1 198 0 4 14 2 5 14 2 1 142 6 5 96 2 0 140 9 18 354 1 0 24 38 27 15 1 0 49 2 1 34 13 6 10 0 3 5 7 3 26 1 0 6 0 1 35 10 11 8 2 0 66 0 536 48 1 0 132 1 0 63 7 6 22 2 0 16 15 14 56 2 1 12 0 1 5 3 1 14 1 0 88 1 0 5 3 0 41 0 1 79 6 5 30 2 0 34 1 0 9 1 0 6 4 2 13 chain 112955 chr18 78077248 + 13904576 13906539 L1PA8A 6298 + 4893 6291 33387 64 33 0 116 0 1 37 2 0 25 1 0 34 5 17 217 5 6 8 1 0 71 1 4 11 0 1 75 213 0 265 333 0 446 chain 120816 chr18 78077248 + 13962262 13963703 L1PA7 6471 - 1 1440 30754 4 1 0 589 4 0 265 2 0 531 0 5 45 chain 565907 chr18 78077248 + 13975859 13981890 L1HS 6032 - 2 6032 163 5294 1 0 736 chain 18837 chr18 78077248 + 13998257 13998497 THE1A 353 + 110 353 130556 99 9 10 80 0 2 52 chain 376388 chr18 78077248 + 14002615 14006945 L1P1 4361 - 20 4357 10866 12 2 1 23 1 0 128 0 1 28 1 0 375 0 1 511 0 2 295 0 2 354 5 0 362 1 0 26 0 7 17 0 2 170 1 0 216 0 1 1075 0 1 727 chain 51475 chr18 78077248 + 14009254 14009952 L1PA16 3655 - 725 1422 57990 8 1 0 23 1 0 14 1 0 207 16 15 111 0 1 209 0 1 4 1 0 96 0 2 6 chain 164976 chr18 78077248 + 14009955 14011906 SVA_D 2077 - 0 2071 22655 13 2 0 663 4 0 13 74 0 79 1 79 194 2 135 876 12 1 18 chain 5213 chr18 78077248 + 14010650 14010724 SVA_D 2077 - 918 992 78471 74 chain 527901 chr18 78077248 + 14037596 14043714 L1PA5 6144 - 1 6144 4412 17 1 0 162 0 1 615 0 5 47 2 4 381 0 1 1663 0 4 67 1 0 67 0 1 793 3 2 83 0 3 32 0 2 56 0 1 201 1 0 314 1 0 450 10 0 313 11 17 692 0 14 135 chain 13196 chr18 78077248 + 14047420 14047608 THE1B 368 - 166 368 147484 4 1 0 24 1 0 110 7 22 22 0 1 19 chain 530772 chr18 78077248 + 14064990 14071099 L1PA5 6144 + 0 6140 4111 120 2 1 284 1 0 179 0 1 116 1 2 310 1 0 28 1 0 4 0 1 2111 3 1 305 0 1 1180 0 1 354 0 1 101 2 1 45 0 31 109 0 1 693 17 17 142 chain 34114 chr18 78077248 + 14074468 14074875 THE1B-int 1605 - 1176 1592 77463 235 0 9 172 chain 11807 chr18 78077248 + 14121957 14122143 MER30B 195 + 5 190 153000 10 4 0 16 0 1 35 8 10 15 0 3 53 3 0 42 chain 22421 chr18 78077248 + 14122781 14123028 L1PA5 6144 - 1 248 118369 247 chain 364632 chr18 78077248 + 14162671 14167003 L1P1 4361 + 6 4341 11240 314 0 7 843 9 0 86 0 1 388 1 4 55 1 0 236 2 1 63 3 0 180 0 1 1010 0 1 56 0 5 150 2 1 50 8 9 209 0 2 472 1 0 155 1 0 23 2 1 12 chain 65781 chr18 78077248 + 14203327 14204075 L1PA5 6144 - 18 777 50204 249 0 10 44 0 1 455 chain 6248 chr18 78077248 + 14216430 14216502 L1PA5 6144 + 6057 6131 183176 57 0 2 15 chain 117714 chr18 78077248 + 14222332 14225648 SVA_A 1864 + 314 1861 31890 100 154 0 78 37 0 69 1438 0 92 2 0 103 5 7 122 1 0 28 3 1 64 10 10 36 2 0 14 113 0 93 45 6 7 1 0 27 3 1 69 8 6 463 0 22 129 chain 2369 chr18 78077248 + 14222475 14222586 SVA_A 1864 + 649 757 62744 33 8 5 70 chain 790 chr18 78077248 + 14222664 14222701 SVA_A 1864 + 832 869 62744 37 chain 5153 chr18 78077248 + 14222788 14223018 SVA_A 1864 + 616 804 61021 66 10 8 44 42 0 27 0 2 41 chain 6527 chr18 78077248 + 14224690 14224779 SVA_A 1864 + 890 942 87034 7 37 0 45 chain 3138 chr18 78077248 + 14224697 14224734 SVA_A 1864 + 600 637 151018 37 chain 2827 chr18 78077248 + 14224903 14224940 SVA_A 1864 + 1062 1099 154758 37 chain 3024 chr18 78077248 + 14255676 14255710 MSTA 426 + 143 177 224485 34 chain 2985 chr18 78077248 + 14266535 14266569 MST-int 1221 - 800 834 225347 34 chain 3709 chr18 78077248 + 14281022 14281066 MSTA-int 1630 + 1567 1611 211821 44 chain 2465 chr18 78077248 + 14292226 14292252 MSTA 426 + 156 182 233513 26 chain 2866 chr18 78077248 + 14294638 14294697 MSTA-int 1630 + 1490 1548 227577 16 16 15 27 chain 4407 chr18 78077248 + 14295319 14295523 MSTA 426 + 156 366 201848 31 135 141 38 chain 3330 chr18 78077248 + 14310981 14311045 MSTA-int 1630 + 1490 1553 218410 16 16 15 32 chain 3330 chr18 78077248 + 14330287 14330351 MSTA-int 1630 + 1490 1553 218409 16 16 15 32 chain 6181 chr18 78077248 + 14339646 14339844 LTR16C 481 + 207 407 183735 29 3 5 19 100 100 47 chain 16859 chr18 78077248 + 14363224 14363433 L1PA6 6164 + 5952 6161 135944 209 chain 24117 chr18 78077248 + 14371295 14371594 L1PA7 6471 + 6163 6462 109650 299 chain 28767 chr18 78077248 + 14374628 14374940 AluYa5 310 - 0 310 90036 57 1 0 130 1 0 123 chain 114898 chr18 78077248 + 14382193 14383525 SVA_D 2077 - 18 2015 32821 636 5 103 4 0 1 23 0 396 131 0 40 86 0 40 231 0 63 174 10 37 32 chain 495523 chr18 78077248 + 14421832 14429039 L1PA6 6164 - 2 6160 7098 13 3 0 826 0 4 81 0 1 202 1 0 160 4 5 117 0 3 106 0 1 293 1113 0 362 0 1 194 0 1 491 0 1 108 0 1 225 0 18 84 0 1 212 1 0 65 0 4 255 0 2 100 0 1 68 0 6 887 1 2 17 1 0 5 0 1 219 1 0 112 4 8 88 1 18 199 0 4 23 1 0 100 57 57 306 1 0 100 chain 82813 chr18 78077248 + 14423643 14424750 MER11A 1151 - 0 1151 42410 36 0 4 20 9 8 189 2 60 422 0 1 22 0 1 38 37 0 45 0 11 66 1 0 141 0 8 79 chain 3765 chr18 78077248 + 14447227 14447287 MER49 923 - 38 102 210879 40 7 11 13 chain 3729 chr18 78077248 + 14482570 14482609 HY3 101 - 1 40 211479 39 chain 101059 chr18 78077248 + 14500149 14506057 L1PA7 6471 + 2277 6467 36498 355 13 0 51 4 5 32 4382 2649 220 4 5 27 1 0 51 0 1 32 6 14 589 1 3 31 38 56 61 2 0 8 chain 28529 chr18 78077248 + 14533925 14534228 L1PA2 6032 - 3 306 91054 303 chain 213524 chr18 78077248 + 14560591 14563166 L1PA7 6471 - 28 2608 18253 582 1 2 156 1 0 79 0 3 117 14 7 198 0 1 495 0 1 124 0 4 245 7 6 168 0 3 92 3 4 293 chain 191112 chr18 78077248 + 14573644 14575803 L1PA3long 6157 - 1054 3221 19952 739 0 4 139 0 1 73 16 14 873 0 4 39 0 1 280 chain 89458 chr18 78077248 + 14575803 14576800 L1PA3long 6157 + 5144 6157 39819 78 0 1 12 0 9 753 0 6 154 chain 19223 chr18 78077248 + 14602789 14603041 L1PA4 6152 - 14 248 129460 41 0 4 35 26 4 150 chain 41759 chr18 78077248 + 14616318 14617128 HERVIP10F-int 4088 + 2465 3315 66951 220 0 28 269 27 24 25 130 165 7 1 0 17 9 5 17 25 21 12 2 1 8 3 0 5 1 0 4 15 9 13 chain 149229 chr18 78077248 + 14683109 14684798 L1PA3long 6157 - 10 1681 24726 134 1 0 750 2 0 187 20 5 595 chain 95111 chr18 78077248 + 14686964 14688046 L1PA3long 6157 - 10 1097 38061 411 0 2 332 1 0 88 0 4 250 chain 6657 chr18 78077248 + 14694591 14694672 L1MB3 1562 - 396 477 180029 81 chain 25208 chr18 78077248 + 14717312 14717622 L1PA7 6471 + 6088 6407 103696 48 0 1 24 0 7 139 4 5 95 chain 3321 chr18 78077248 + 14727423 14727546 MER6B 211 + 33 157 218550 21 71 72 31 chain 21202 chr18 78077248 + 14747135 14747450 AluSp 311 + 1 292 123205 78 2 0 46 23 3 10 4 5 78 3 0 71 chain 103456 chr18 78077248 + 14755398 14756577 L1PA4 6152 - 0 1174 35882 21 1 0 127 29 25 1001 chain 26282 chr18 78077248 + 14785792 14786070 AluYb8 318 + 37 315 98894 278 chain 252354 chr18 78077248 + 14788395 14791238 L1PA3long 6157 - 0 2849 16111 720 1 2 127 0 4 729 0 1 254 0 1 630 2 1 380 chain 70508 chr18 78077248 + 14796630 14797495 MER11D 897 - 9 897 48159 264 2 26 309 3 2 287 chain 71251 chr18 78077248 + 14798066 14798932 MER11D 897 - 9 897 47830 264 2 26 250 0 1 66 4 1 280 chain 71594 chr18 78077248 + 14808957 14809820 MER11D 897 - 9 897 47662 264 2 26 532 0 1 65 chain 33364 chr18 78077248 + 14816664 14817078 L1PA4 6152 + 5694 6152 78628 302 4 11 51 0 39 45 2 0 10 chain 252317 chr18 78077248 + 14818684 14821460 L1PA2 6032 - 325 3102 16113 1334 0 1 1442 chain 30427 chr18 78077248 + 14822986 14823304 AluYb8 318 - 0 318 83622 318 chain 20375 chr18 78077248 + 14837781 14838039 AluY 311 + 49 301 125974 239 6 0 13 chain 64321 chr18 78077248 + 14854919 14855824 SVA_A 1864 - 15 1331 50874 522 39 343 71 13 161 32 71 30 157 chain 3116 chr18 78077248 + 14856512 14856588 SVA_F 1814 - 1128 1440 222622 17 23 256 19 0 3 17 chain 2558 chr18 78077248 + 14856608 14856641 SVA_F 1814 - 1151 1184 232383 33 chain 4732 chr18 78077248 + 14859101 14859183 SVA_F 1814 - 578 798 198143 36 9 148 31 1 0 5 chain 6312 chr18 78077248 + 14860351 14860505 SVA_F 1814 - 542 999 182697 64 63 366 27 chain 91767 chr18 78077248 + 14880732 14882068 L1PB 1623 - 234 1525 39042 75 26 11 309 10 11 183 16 19 306 28 7 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 7 1 0 7 chain 9268 chr18 78077248 + 14904640 14904820 MER4D 903 - 0 190 164227 35 0 2 12 5 6 17 35 41 25 0 1 51 chain 6216 chr18 78077248 + 14918959 14919045 MSTD 398 + 237 323 183442 11 0 3 5 3 0 67 chain 3896 chr18 78077248 + 14938093 14938250 LTR34 700 + 517 694 208907 22 8 6 14 79 101 34 chain 93146 chr18 78077248 + 14982368 14984144 L1PB 1623 + 117 1585 38615 52 4 1 18 7 4 74 8 7 99 2 0 24 1 0 72 28 7 514 0 1 307 315 78 37 3 2 22 143 108 10 3 0 21 2 0 10 chain 41923 chr18 78077248 + 14988444 14988955 L1P1 4361 - 3848 4359 66727 511 chain 5194 chr18 78077248 + 14990753 14990846 L1MA3 4352 - 24 112 193096 11 1 0 29 1 0 6 1 0 23 7 5 14 chain 4287 chr18 78077248 + 15010360 15010409 Tigger3c 601 + 315 364 203393 49 chain 25410 chr18 78077248 + 15017369 15017663 AluY 311 + 9 302 102633 123 2 0 96 0 1 73 chain 84532 chr18 78077248 + 15020236 15021375 THE1B-int 1605 - 6 1344 41708 251 0 1 115 33 201 355 3 1 170 4 7 26 0 3 5 7 32 30 0 1 140 chain 12010 chr18 78077248 + 15029778 15029954 L1PA8 5853 - 0 169 152155 86 8 7 18 1 0 33 4 0 21 1 0 4 chain 424149 chr18 78077248 + 15039597 15045217 HERVL-int 5654 + 0 5640 9443 55 24 25 45 0 1 379 0 1 80 0 1 5 2 1 291 18 19 36 0 1 21 1 2 155 1 0 87 3 0 148 0 1 210 0 1 6 4 3 29 0 4 146 0 1 4 3 9 265 2 4 9 0 2 25 22 23 469 2 11 25 21 7 96 1 0 170 9 1 99 6 0 472 9 2 265 0 9 459 1 0 6 0 1 308 7 22 761 0 3 97 0 1 46 0 1 9 1 0 205 chain 23861 chr18 78077248 + 15045230 15045694 MLT2A2 560 + 0 560 111125 166 69 68 60 6 0 7 16 132 23 0 5 39 10 6 8 14 0 46 chain 6266 chr18 78077248 + 15064895 15064969 MER72 723 - 0 74 183029 74 chain 28303 chr18 78077248 + 15099376 15099796 L1PA8 5853 + 5435 5850 91930 42 0 1 64 1 0 4 5 6 12 1 0 18 0 1 26 5 3 66 20 18 44 2 1 19 1 0 90 chain 18245 chr18 78077248 + 15103618 15103867 L1PA10 4194 + 3917 4161 132220 165 2 1 33 3 0 34 1 0 11 chain 26819 chr18 78077248 + 15122513 15122871 LTR12D 1347 + 1001 1347 96914 18 6 4 23 14 5 31 1 0 265 chain 126904 chr18 78077248 + 15187023 15188474 L1HS 6032 - 3205 4655 28839 265 1 0 1185 chain 280322 chr18 78077248 + 15188474 15191659 L1PA3long 6157 + 2975 6152 14624 332 1 2 379 2 1 622 1 0 504 5 0 576 1 0 623 0 1 25 0 3 16 10 5 88 chain 17916 chr18 78077248 + 15212335 15212611 THE1B 368 + 6 306 133067 38 0 15 110 1 0 29 35 45 63 chain 155148 chr18 78077248 + 15213044 15214705 L1HS 6032 - 752 2413 23962 1661 chain 67901 chr18 78077248 + 15214705 15215449 L1HS 6032 + 5281 6025 49286 744 chain 177745 chr18 78077248 + 15216983 15218950 L1PA2 6032 - 1 1966 21185 5 2 0 1960 chain 157611 chr18 78077248 + 15218950 15220696 L1PA2 6032 + 2316 4062 23633 1746 chain 517944 chr18 78077248 + 15229108 15235248 L1PA4 6152 - 1 6144 5383 5 2 0 344 1 0 400 0 3 20 0 2 76 1 0 15 0 4 390 0 1 1720 0 1 934 0 1 773 0 1 217 1 2 529 12 5 132 1 0 85 0 1 23 30 0 11 6 36 412 chain 13421 chr18 78077248 + 15246091 15246243 L1PA4 6152 + 5994 6146 146621 152 chain 25362 chr18 78077248 + 15261159 15261442 AluYb8 318 - 4 284 102877 6 2 0 67 1 0 207 chain 29001 chr18 78077248 + 15286265 15286592 L1PA2 6032 + 5705 6032 88979 327 chain 82697 chr18 78077248 + 15287452 15288469 MER11C 1089 + 24 1059 42459 222 0 9 62 0 4 63 2 1 169 0 1 135 0 4 43 0 1 321 chain 228719 chr18 78077248 + 15293800 15296438 L1PA5 6144 - 7 2646 17374 431 1 0 185 0 2 899 1 0 608 1 2 61 0 1 266 1 0 184 chain 22230 chr18 78077248 + 15297253 15297625 L1PA8 5853 - 0 364 119208 92 4 3 14 1 0 39 29 27 70 3 1 43 8 7 36 1 0 32 chain 39020 chr18 78077248 + 15298416 15298913 L1P3 4156 + 3609 4107 70714 116 0 1 381 chain 174725 chr18 78077248 + 15310508 15313438 HERVIP10F-int 4088 - 1124 3889 21507 203 0 11 285 1 2 4 1 0 135 2 1 12 2 1 77 1 0 82 2 1 65 1 0 16 5 4 403 10 7 9 4 3 23 10 9 32 2 0 30 1 0 19 11 9 59 1 0 29 1 0 24 1 0 6 1 0 11 1 0 17 19 12 4 1 0 13 4 0 38 1 0 99 1 0 41 1 0 14 1 0 22 8 5 24 3 1 5 1 0 5 1 0 5 1 0 21 1 0 11 2 0 41 1 0 30 1 0 7 2 0 5 1 0 21 1 0 4 33 23 16 1 0 11 1 0 26 1 0 5 1 0 60 1 0 6 1 0 33 8 5 47 1 0 5 1 0 30 1 0 10 1 0 16 1 0 15 2 1 10 1 0 15 1 0 5 3 2 5 1 0 33 1 0 31 1 0 20 18 13 14 3 0 11 3 1 4 1 0 16 3 2 14 1 0 7 1 0 6 23 12 31 2 0 15 6 0 3 1 0 9 55 32 12 13 1 8 1 0 20 1 0 12 3 1 7 3 0 15 4 0 12 14 8 13 1 0 4 8 4 11 chain 84128 chr18 78077248 + 15343745 15344756 LTR5B 1012 - 0 1012 41844 261 1 3 274 0 1 88 0 1 168 1 10 56 12 0 150 chain 23498 chr18 78077248 + 15357207 15357490 AluY 311 + 4 288 113134 128 0 1 155 chain 358973 chr18 78077248 + 15366976 15370946 L1PA2 6032 - 5 3983 11377 7 2 0 833 0 4 584 0 4 6 5 8 1441 2 1 1090 chain 224082 chr18 78077248 + 15372569 15375052 L1PA3long 6157 + 3672 6155 17649 2483 chain 21525 chr18 78077248 + 15390879 15391154 L1PA4 6152 - 0 269 122058 6 6 0 263 chain 22444 chr18 78077248 + 15391155 15391431 L1P1 4361 + 4051 4325 118274 100 2 1 153 1 0 20 chain 70369 chr18 78077248 + 15396678 15397469 L1PA3long 6157 - 1 793 48230 297 0 1 494 chain 92543 chr18 78077248 + 15397501 15398545 L1PA3long 6157 + 4307 5352 38804 999 0 1 45 chain 114933 chr18 78077248 + 18521201 18522694 THE1B-int 1605 + 0 1559 32812 12 4 6 408 0 25 119 1 11 93 1 4 22 10 12 194 0 3 91 0 2 38 8 25 125 0 2 367 chain 28122 chr18 78077248 + 18532763 18533094 L1PA7 6471 + 6139 6468 92563 322 2 0 7 chain 15140 chr18 78077248 + 18579886 18580149 L1MB5 1630 + 14 271 140944 135 33 36 56 5 0 19 4 0 11 chain 8760 chr18 78077248 + 18583698 18583863 Tigger4a 237 + 21 212 166869 8 1 0 48 10 42 30 4 0 15 13 12 36 chain 24867 chr18 78077248 + 18598217 18598509 AluSq10 312 + 9 301 105536 292 chain 26369 chr18 78077248 + 18599472 18599776 AluY 311 + 0 300 98533 126 4 0 174 chain 4755 chr18 78077248 + 18642348 18642425 MADE1 96 + 0 96 197850 33 9 28 35 chain 3257 chr18 78077248 + 18646938 18646981 L1ME1 1623 - 344 387 219816 43 chain 29790 chr18 78077248 + 18656922 18657233 AluYb8 318 - 7 318 85507 311 chain 5476 chr18 78077248 + 18658372 18658469 LTR9B 643 + 5 121 190246 43 4 1 8 1 0 11 6 29 24 chain 17129 chr18 78077248 + 18712155 18712409 LTR12C 1709 - 641 936 135237 158 3 0 5 15 19 31 1 41 41 chain 118982 chr18 78077248 + 18716991 18718470 SVA_A 1864 - 0 1864 31423 584 3 0 72 10 118 106 1 221 72 18 18 23 3 0 39 0 79 514 16 0 18 chain 29688 chr18 78077248 + 18772332 18773036 L1PB2 3958 + 3451 3830 85870 105 0 3 58 1 0 62 324 0 74 2 0 22 1 0 55 chain 24431 chr18 78077248 + 18782832 18783118 AluSp 311 - 25 311 107908 286 chain 17207 chr18 78077248 + 18785260 18785456 L1PA5 6144 + 5937 6140 135015 62 0 7 134 chain 62580 chr18 78077248 + 18805270 18810141 Tigger1 2417 - 524 2241 51636 9 5 0 67 1882 357 79 669 61 28 2 0 32 1 0 86 565 198 109 2 1 67 14 16 28 6 0 59 0 3 56 3 6 47 768 124 172 15 11 70 0 1 30 chain 24901 chr18 78077248 + 18832247 18832537 AluSp 311 + 11 301 105335 290 chain 9550 chr18 78077248 + 18833832 18833941 AluJo 314 - 44 153 162831 109 chain 19734 chr18 78077248 + 18854931 18855199 AluSc8 310 + 10 284 128000 21 0 1 99 11 15 115 1 2 21 chain 17909 chr18 78077248 + 18914502 18914747 AluSc8 310 + 58 298 133084 64 11 5 134 1 2 35 chain 3256 chr18 78077248 + 18951127 18951161 MER3 215 + 176 210 219849 34 chain 8535 chr18 78077248 + 18988355 18988466 L1MB7 1623 + 1056 1169 168103 16 1 0 72 0 3 22 chain 23659 chr18 78077248 + 19000054 19000358 AluSx3 311 + 3 306 112259 128 1 2 133 5 3 37 chain 30333 chr18 78077248 + 19007869 19008187 AluYb8 318 + 0 318 83837 318 chain 25979 chr18 78077248 + 19010542 19010848 AluSp 311 - 0 303 100099 26 3 0 277 chain 21372 chr18 78077248 + 19054063 19054319 THE1A-int 1579 - 5 261 122613 14 1 0 91 0 1 150 chain 24237 chr18 78077248 + 19081218 19081544 L1PA8 5853 - 0 347 109012 53 2 0 40 1 0 19 2 1 50 2 30 52 2 0 44 1 0 58 chain 12958 chr18 78077248 + 19101188 19101346 AluSq2 311 + 136 298 148401 16 1 5 141 chain 10911 chr18 78077248 + 19114155 19114298 MER85 139 + 0 139 156549 107 2 1 11 3 0 20 chain 21983 chr18 78077248 + 19164845 19165119 AluSg7 307 + 22 298 120304 48 0 3 45 2 0 13 0 1 166 chain 5857 chr18 78077248 + 19168333 19168405 MER41B 635 + 481 554 186619 26 0 1 46 chain 158002 chr18 78077248 + 19171629 19173550 SVA_D 2077 - 0 2025 23593 7 2 0 309 1 0 284 11 158 72 50 0 160 0 1 26 24 26 32 1 2 7 0 2 30 0 1 10 12 54 28 40 0 579 0 1 236 chain 3597 chr18 78077248 + 19172315 19172361 SVA_D 2077 - 605 650 92205 27 1 0 18 chain 2640 chr18 78077248 + 19172695 19172735 SVA_D 2077 - 1249 1289 106175 40 chain 3459 chr18 78077248 + 19176251 19176299 Charlie1b 519 + 466 514 216012 17 0 1 6 1 0 24 chain 21998 chr18 78077248 + 19216576 19216847 AluY 311 + 25 303 120238 106 0 2 105 8 13 52 chain 2938 chr18 78077248 + 19226420 19226451 MER112 246 + 0 31 226379 31 chain 27917 chr18 78077248 + 19229618 19229919 AluYf4 310 + 0 301 93292 301 chain 23586 chr18 78077248 + 19253265 19253553 AluSp 311 - 23 310 112654 113 0 1 32 6 4 137 chain 3125 chr18 78077248 + 19256288 19256328 L1MA8 2339 + 2299 2339 222441 40 chain 6329 chr18 78077248 + 19258236 19258326 L1MB8 1703 - 414 526 182545 17 1 22 29 0 1 43 chain 8682 chr18 78077248 + 19267805 19267948 MER20 218 - 41 189 167293 12 6 8 67 14 17 44 chain 3033 chr18 78077248 + 19268379 19268425 MIR 256 - 26 70 224325 37 2 0 7 chain 4672 chr18 78077248 + 19275578 19275629 MADE1 96 + 45 96 198850 51 chain 22766 chr18 78077248 + 19286944 19287644 LTR12C 1709 + 771 1514 116750 62 0 40 195 2 17 6 0 1 16 315 333 22 62 31 20 chain 25508 chr18 78077248 + 19288995 19289297 AluYk4 311 + 0 302 102187 132 2 0 142 0 2 26 chain 99055 chr18 78077248 + 19296912 19298335 L1PB1 5432 + 4013 5416 37012 55 3 1 21 0 1 112 1 3 37 5 14 369 4 0 76 0 1 108 4 5 163 0 3 154 1 0 11 17 12 8 2 0 10 0 2 41 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 2 0 19 7 5 21 1 0 13 1 0 12 chain 7415 chr18 78077248 + 19304088 19304188 HY3 101 + 9 100 174680 41 9 0 50 chain 13192 chr18 78077248 + 19311759 19311983 HSMAR2 1300 - 2 226 147504 44 1 0 8 3 4 111 9 8 13 8 9 27 chain 275042 chr18 78077248 + 19315055 19319586 L1P2 5180 + 3 3823 14920 142 48 66 28 325 122 30 19 18 37 19 0 17 0 1 19 35 24 8 1 0 47 88 12 164 21 0 38 7 22 161 9 23 58 4 5 4 1 0 223 0 1 4 5 4 431 0 1 50 16 0 216 0 3 48 0 1 562 0 2 131 57 5 299 0 1 50 358 0 108 1 0 31 1 0 36 0 3 6 1 0 367 9 0 191 chain 4417 chr18 78077248 + 19318072 19318125 L1P2 5180 - 3033 3086 201712 53 chain 20130 chr18 78077248 + 19329638 19329890 AluSp 311 - 49 299 126747 134 2 0 116 chain 5412 chr18 78077248 + 19352392 19352543 Tigger4a 237 + 46 179 190879 12 37 13 33 15 0 15 4 25 35 chain 15588 chr18 78077248 + 19360708 19360960 L1MA4 2864 - 381 625 139619 21 12 11 99 2 0 8 17 12 93 chain 77481 chr18 78077248 + 19364386 19365382 LTR13_ 950 + 0 950 44744 91 9 0 509 17 6 62 2 1 35 27 2 244 chain 25232 chr18 78077248 + 19376168 19376523 L1PA8 5853 + 5508 5853 103576 7 1 0 49 1 0 25 0 1 18 2 0 67 5 4 9 1 2 45 5 0 5 2 1 19 1 0 93 chain 5886 chr18 78077248 + 19397506 19397579 MER58A 224 - 106 179 186324 73 chain 29590 chr18 78077248 + 19435909 19436226 AluYb8 318 + 0 317 86234 317 chain 11791 chr18 78077248 + 19436519 19436687 L1PA8 5853 + 5687 5853 153085 53 2 1 19 2 1 92 chain 13528 chr18 78077248 + 19454535 19454718 L1MA4 2864 + 363 550 146251 38 1 0 57 5 10 82 chain 8313 chr18 78077248 + 19459761 19459862 U6 107 + 0 104 169309 44 0 3 57 chain 556090 chr18 78077248 + 19462899 19469040 L1PA4 6152 - 1 6151 714 149 7 0 630 1 0 1667 0 1 501 0 1 1023 0 1 2037 0 14 126 chain 5329 chr18 78077248 + 19511498 19511563 MIR 256 + 66 132 191730 55 0 1 10 chain 7357 chr18 78077248 + 19526860 19527007 MSTD 398 + 0 149 175044 21 46 48 80 chain 202732 chr18 78077248 + 19533043 19535875 L1PA7 6471 + 3597 6468 19010 242 0 1 169 3 1 195 17 4 153 0 1 296 3 0 5 0 3 54 0 4 49 27 32 62 4 9 72 6 0 356 2 0 31 12 13 66 0 1 207 11 20 51 5 9 127 0 3 85 0 39 354 5 0 7 60 49 85 0 5 11 chain 18046 chr18 78077248 + 19549215 19549538 AluSx1 309 + 10 266 132744 101 80 8 40 13 18 89 chain 7458 chr18 78077248 + 19557198 19557284 L1PA4 6152 - 11 97 174408 86 chain 10456 chr18 78077248 + 19620124 19620470 MER30 238 + 40 236 158463 56 209 59 81 chain 27392 chr18 78077248 + 19631919 19632217 AluYg6 310 - 12 310 95000 298 chain 3176 chr18 78077248 + 19633758 19633794 MLT1H-int 1039 - 116 152 221417 36 chain 7216 chr18 78077248 + 19760074 19760163 U6 107 - 2 91 175956 89 chain 17784 chr18 78077248 + 19892240 19892487 L1PB2 3958 + 3595 3838 133463 86 2 1 70 2 0 17 7 6 63 chain 42630 chr18 78077248 + 19986160 19986676 L1P3 4156 + 665 1181 65863 516 chain 24754 chr18 78077248 + 19986676 19986980 L1PA7 6471 + 6151 6464 106148 72 4 12 85 0 1 143 chain 19751 chr18 78077248 + 20000465 20000731 THE1C 375 + 72 344 127956 55 8 12 42 1 3 160 chain 15806 chr18 78077248 + 20031287 20031504 L1PA16 3655 + 3366 3578 138941 35 14 9 168 chain 9272 chr18 78077248 + 20047999 20048137 MER44B 551 - 335 483 164208 45 10 20 83 chain 29300 chr18 78077248 + 20075693 20076067 L1PA8 5853 - 0 370 87569 93 1 0 16 1 0 55 2 1 9 1 0 71 2 0 44 1 0 16 0 3 62 chain 23865 chr18 78077248 + 20089990 20090354 THE1B 368 - 12 368 111107 63 1 0 96 35 28 49 2 0 6 0 3 63 0 1 34 2 0 13 chain 63610 chr18 78077248 + 20092885 20093804 L1PA13 3608 - 140 1106 51182 20 2 0 7 2 0 46 2 0 9 1 0 51 1 0 61 3 1 31 8 10 71 10 9 13 8 7 135 6 7 7 1 0 68 0 57 356 chain 551671 chr18 78077248 + 20109599 20115627 L1PA2 6032 + 0 6025 1227 257 1 0 637 1 0 4972 1 6 6 5 0 134 1 0 13 chain 39160 chr18 78077248 + 20157552 20158021 L1PA7 6471 - 6 472 70529 55 7 5 6 1 0 400 chain 20797 chr18 78077248 + 20160511 20160788 AluY 311 + 11 292 124610 23 8 6 92 0 1 135 0 2 5 3 6 11 chain 64337 chr18 78077248 + 20182239 20183258 L1PA15 4387 - 21 1024 50869 10 1 0 27 23 15 44 6 3 50 1 0 14 4 0 18 2 1 30 25 24 26 8 7 165 1 0 17 0 2 6 10 6 11 2 0 61 3 0 17 2 0 28 4 20 33 0 4 144 5 0 181 1 0 39 chain 468096 chr18 78077248 + 20196898 20202319 L1PA6 6164 + 0 6162 8105 88 0 735 71 0 1 1439 14 0 855 0 1 340 2 1 650 0 1 181 1 5 109 4 0 84 1 0 435 2 0 319 0 5 298 0 9 66 0 1 6 0 6 456 chain 6193 chr18 78077248 + 20221020 20221095 MER2 342 + 141 216 183633 75 chain 13200 chr18 78077248 + 20225328 20225498 Tigger2b_Pri 1066 + 827 1002 147467 71 0 5 99 chain 138122 chr18 78077248 + 20227866 20229383 L1PA3long 6157 - 8 1524 26467 1128 1 0 388 chain 201061 chr18 78077248 + 20240241 20242455 L1PA3long 6157 + 3940 6157 19137 143 1 0 271 0 4 1799 chain 27283 chr18 78077248 + 20249329 20249637 AluYk4 311 + 0 308 95329 308 chain 29774 chr18 78077248 + 20294393 20294714 AluYb8 318 - 1 318 85569 194 4 0 123 chain 258016 chr18 78077248 + 20299774 20302612 L1PA3long 6157 + 3314 6152 15808 204 0 2 563 1 0 1224 1 0 845 chain 208542 chr18 78077248 + 20304835 20307799 Charlie3 2679 + 18 2674 18602 16 8 7 1045 310 0 36 0 1 855 7 0 99 0 2 23 0 1 157 1 2 160 2 3 118 0 11 43 21 14 63 chain 19257 chr18 78077248 + 20307834 20308047 L1PA2 6032 + 5819 6032 129356 213 chain 50342 chr18 78077248 + 20324222 20324768 L1PA3long 6157 + 5086 5632 58762 546 chain 118867 chr18 78077248 + 20328275 20329797 L1P3 4156 + 0 1516 31467 251 2 1 68 21 15 72 18 0 259 0 3 122 1 2 40 0 14 121 0 1 547 chain 321151 chr18 78077248 + 20340636 20344498 L1PA7 6471 + 2588 6470 12549 45 3 4 190 0 1 265 0 7 900 10 2 62 2 0 558 6 12 34 0 4 129 0 1 152 0 1 357 0 1 17 2 3 281 0 3 83 0 2 453 0 1 4 3 2 37 0 4 162 3 1 104 chain 29898 chr18 78077248 + 20344503 20344923 L1PA8 5853 + 5441 5853 85107 73 2 1 7 0 1 41 1 0 46 2 0 50 3 4 15 1 0 14 1 0 47 2 1 19 2 1 39 2 0 53 chain 130664 chr18 78077248 + 20348270 20351777 L1MA1 4479 + 2237 4188 27930 22 6 5 111 7 11 49 5 6 17 1 0 5 1 2 15 0 4 25 1 2 5 1 0 86 1 0 65 2 1 83 4 0 7 0 4 9 2 0 33 1 0 58 7 4 88 0 4 27 2 0 170 2 1 43 0 1 51 1 0 12 5 0 26 0 1 72 1530 0 27 3 0 128 3 1 89 0 5 55 0 1 47 1 0 24 3 0 16 1 0 71 1 0 8 8 6 19 1 0 88 1 0 5 3 0 93 1 2 31 1 0 28 3 1 35 1 0 9 1 0 11 18 11 15 chain 152855 chr18 78077248 + 20361412 20363599 L1PA10 4194 - 1836 3944 24247 4 0 1 124 6 10 9 0 1 147 1 0 46 1 7 173 0 4 89 17 0 21 0 1 256 40 11 160 0 4 523 7 5 278 5 2 74 159 114 8 1 0 15 2 0 21 chain 359501 chr18 78077248 + 20388591 20392660 L1PA5 6144 - 0 4082 11369 415 17 11 1448 0 4 126 2 0 153 0 3 481 0 1 253 0 4 937 1 10 236 chain 115602 chr18 78077248 + 20399277 20400521 L1PA2 6032 - 0 1244 32585 1244 chain 50200 chr18 78077248 + 20408481 20409033 L1PA4 6152 + 5589 6143 58870 244 0 1 95 0 1 213 chain 545249 chr18 78077248 + 20465358 20471474 L1PA5 6144 + 3 6132 2040 464 2 3 396 0 2 540 2 7 1083 0 6 1638 2 0 1780 0 1 209 chain 20889 chr18 78077248 + 20473832 20474113 L1PA7 6471 + 4955 5212 124323 136 22 0 56 1 0 61 1 0 4 chain 34862 chr18 78077248 + 20474113 20474525 L1PA7 6471 + 5213 5621 76393 364 4 0 44 chain 71111 chr18 78077248 + 20474526 20475367 L1PA7 6471 + 5625 6470 47881 511 0 1 237 0 4 78 1 0 14 chain 19843 chr18 78077248 + 20514495 20514726 L1PA5 6144 - 8 246 127669 130 0 7 101 chain 44432 chr18 78077248 + 20534091 20534689 THE1C-int 1605 - 11 613 63659 33 1 3 8 1 0 251 11 14 192 6 4 71 0 2 24 chain 11062 chr18 78077248 + 20584062 20584442 L1MA5 2750 + 2408 2726 155954 4 0 1 75 0 2 53 223 158 25 chain 5270 chr18 78077248 + 20593889 20593954 Tigger1 2417 + 1312 1377 192322 65 chain 19913 chr18 78077248 + 20598037 20598308 AluSp 311 - 35 300 127425 29 8 0 6 0 8 51 7 1 170 chain 23572 chr18 78077248 + 20606819 20607111 AluSc 308 - 6 297 112727 23 2 0 50 1 2 216 chain 31842 chr18 78077248 + 20618044 20618949 LTR3B_ 500 - 0 500 81101 75 71 0 19 407 72 34 0 1 215 0 1 5 1 0 78 chain 14787 chr18 78077248 + 20623369 20623969 L1MB3 1562 + 1137 1413 141976 38 27 26 22 13 12 38 318 0 33 10 7 37 2 1 62 chain 10214 chr18 78077248 + 20642822 20642993 Tigger4b 360 + 173 349 159549 14 8 14 69 6 0 9 0 9 9 4 0 52 chain 24923 chr18 78077248 + 20644679 20644991 AluY 311 + 0 310 105199 42 9 6 84 0 1 177 chain 6348 chr18 78077248 + 20649598 20649747 MER4A1 472 + 336 472 182400 23 60 46 11 0 1 55 chain 4580 chr18 78077248 + 20664444 20664498 MER34A1 583 - 526 580 199880 54 chain 59279 chr18 78077248 + 20665477 20666213 MER4E 760 - 0 741 53237 369 6 10 215 1 0 72 4 5 59 0 1 10 chain 24349 chr18 78077248 + 20681533 20681822 AluY 311 + 11 301 108378 121 7 8 161 chain 12839 chr18 78077248 + 20682227 20682385 AluSq2 311 - 3 161 148891 158 chain 25155 chr18 78077248 + 20719093 20719388 AluSq2 311 + 10 305 103987 295 chain 11826 chr18 78077248 + 20736592 20737071 MER82 654 + 103 610 152920 23 48 50 33 3 0 6 80 97 41 4 5 58 77 95 16 57 50 33 chain 44545 chr18 78077248 + 20748831 20749364 MER41A 554 + 0 539 63530 318 0 1 148 1 6 66 chain 25080 chr18 78077248 + 20782667 20782964 AluY 311 + 0 298 104404 4 1 0 273 1 3 18 chain 17414 chr18 78077248 + 20784629 20784934 THE1B 368 - 57 367 134470 5 2 0 66 4 12 14 0 4 10 1 0 5 31 26 46 15 16 106 chain 26146 chr18 78077248 + 20849101 20849468 THE1C 375 + 0 375 99421 106 24 24 6 0 6 83 0 3 122 1 0 25 chain 22639 chr18 78077248 + 20857106 20857469 THE1A 353 + 7 353 117380 40 7 8 145 10 8 10 4 0 6 15 7 69 6 2 51 chain 5027 chr18 78077248 + 20864973 20865033 LTR7B 505 + 0 64 194851 51 0 4 9 chain 278893 chr18 78077248 + 20865033 20868264 HERVH-int 3825 + 438 3825 14698 43 15 123 14 1 38 32 0 2 7 1 0 83 2 0 7 3 8 441 0 5 429 0 1 10 0 5 246 11 0 369 0 1 394 0 4 381 0 2 742 chain 27464 chr18 78077248 + 20869614 20870010 LTR7 482 + 0 482 94761 31 22 28 10 8 46 109 8 40 50 0 10 158 chain 21026 chr18 78077248 + 20872921 20873211 AluSq2 311 + 0 287 123833 121 5 0 11 22 24 131 chain 18558 chr18 78077248 + 20876000 20876217 L1PA7 6471 + 6253 6470 131337 217 chain 14358 chr18 78077248 + 20888875 20889113 MER2 342 - 7 262 143346 33 50 67 155 chain 346366 chr18 78077248 + 20906142 20910166 L1PA6 6164 + 2124 6160 11715 208 5 7 526 0 4 756 5 1 238 0 1 784 1 0 700 0 1 481 0 1 22 1 2 26 7 11 27 8 6 7 0 4 70 1 2 151 chain 12657 chr18 78077248 + 20924155 20924382 L1PA15 4387 - 60 275 149614 12 3 1 44 6 3 47 13 8 25 4 3 53 1 0 19 chain 28795 chr18 78077248 + 20951890 20952199 AluYa5 310 - 2 310 89917 215 1 0 93 chain 24779 chr18 78077248 + 20954449 20954736 AluSp 311 - 12 299 106003 287 chain 23427 chr18 78077248 + 21000001 21000271 AluSp 311 + 16 286 113490 270 chain 162561 chr18 78077248 + 21006319 21008142 L1PA5 6144 + 4320 6143 22991 1823 chain 37237 chr18 78077248 + 21009639 21010203 L1PA17 2846 - 153 707 73189 43 1 0 18 1 0 30 15 16 37 38 32 19 5 1 182 1 2 174 chain 24826 chr18 78077248 + 21010838 21011142 AluSx4 309 + 1 305 105738 304 chain 24780 chr18 78077248 + 21012370 21012661 AluSg 306 + 6 297 105993 291 chain 7216 chr18 78077248 + 21036343 21036428 HY4 93 + 9 93 175958 59 1 0 25 chain 20560 chr18 78077248 + 21050099 21050342 AluY 311 + 53 296 125431 70 1 0 88 0 1 84 chain 69497 chr18 78077248 + 21070669 21072013 L1MA2 4263 + 2925 3875 48611 48 11 1 114 0 1 29 45 0 255 11 17 108 0 8 55 1 0 23 7 2 72 7 6 118 343 0 27 3 0 54 1 0 12 chain 15576 chr18 78077248 + 21102336 21102561 MER30 238 + 0 238 139649 107 7 24 68 10 6 33 chain 49211 chr18 78077248 + 21138692 21139244 L1PA4 6152 - 5 557 59583 552 chain 11999 chr18 78077248 + 21143752 21143929 L1MB8 1703 - 608 783 152198 90 1 2 43 5 0 19 1 3 18 chain 143301 chr18 78077248 + 21156496 21158159 LTR12C 1709 - 0 1709 25596 481 0 4 107 3 1 5 1 0 192 0 6 36 0 40 483 1 0 40 1 0 4 0 1 309 chain 22949 chr18 78077248 + 21159583 21159861 AluY 311 + 11 296 115864 121 0 1 40 0 5 103 0 1 14 chain 4238 chr18 78077248 + 21183758 21183807 LTR47A 437 + 0 49 204052 49 chain 37228 chr18 78077248 + 21279707 21280240 MER41C 542 + 0 507 73200 49 0 1 272 0 1 10 54 13 112 0 13 36 chain 13954 chr18 78077248 + 21303866 21304196 L1PB1 5432 - 10 309 144739 18 1 0 13 1 0 19 5 4 22 2 0 14 1 0 5 2 0 16 27 15 16 6 5 34 12 11 9 2 1 53 2 0 8 17 12 9 1 0 15 chain 4044 chr18 78077248 + 21307608 21307660 MER5C 305 - 249 301 206739 52 chain 17891 chr18 78077248 + 21321834 21322071 AluSz6 309 + 31 268 133131 67 14 14 156 chain 44497 chr18 78077248 + 21346818 21347519 L1PA16 3655 + 1727 2500 63583 68 1 0 48 25 26 39 1 14 84 5 0 7 11 3 60 1 0 31 0 1 5 1 0 89 1 9 58 1 0 77 16 82 72 chain 3831 chr18 78077248 + 21360683 21360726 MER91B 187 + 125 168 209922 43 chain 15074 chr18 78077248 + 21379652 21380034 MLT2D 439 - 9 369 141102 32 2 0 7 10 17 47 75 10 10 0 65 23 3 0 14 29 29 98 24 0 8 chain 23707 chr18 78077248 + 21433251 21433535 AluSp 311 - 26 311 111995 228 3 4 53 chain 3958 chr18 78077248 + 21440006 21440067 MER21C 908 - 711 763 208012 21 9 0 31 chain 7821 chr18 78077248 + 21448010 21448117 Tigger4a 237 + 0 107 172185 50 3 4 5 1 0 48 chain 25231 chr18 78077248 + 21488218 21488516 AluY 311 + 6 305 103580 126 0 1 172 chain 67152 chr18 78077248 + 21497124 21498215 L1PA15 4387 - 21 1063 49587 9 1 0 28 5 0 14 3 1 43 9 6 45 18 13 22 1 0 55 0 4 21 3 2 67 9 5 77 0 3 19 1 0 40 3 1 7 0 3 13 3 9 13 0 1 16 4 0 16 1 0 9 0 1 75 16 0 43 0 5 97 0 1 4 38 13 235 2 0 6 chain 18189 chr18 78077248 + 21516209 21516411 L1PA5 6144 - 5 208 132359 149 0 1 53 chain 36799 chr18 78077248 + 21544838 21545312 LTR2B 499 + 0 495 73801 14 0 1 54 1 0 21 0 2 18 0 19 177 0 1 10 1 0 178 chain 218139 chr18 78077248 + 21554783 21557545 L1PA10 4194 - 34 2819 17995 10 1 0 34 3 0 34 1 0 131 0 1 284 32 35 182 0 2 642 1 2 19 0 3 101 0 4 34 0 8 7 6 0 15 1 0 154 0 9 46 0 1 219 0 1 4 1 0 5 7 8 371 5 4 86 0 2 12 4 3 60 0 2 250 chain 10382 chr18 78077248 + 21571465 21571622 L1MA2 4263 + 3965 4114 158775 93 15 8 39 1 0 9 chain 20604 chr18 78077248 + 21622207 21622541 MER1B 344 - 1 344 125281 38 36 38 62 9 7 162 10 19 17 chain 8395 chr18 78077248 + 21654298 21654416 MER85 139 + 6 134 168879 84 0 10 11 1 2 5 1 0 16 chain 67366 chr18 78077248 + 21654500 21655274 L1PA5 6144 + 5369 6144 49501 529 0 1 245 chain 14293 chr18 78077248 + 21700692 21700909 L1MB3 1562 - 149 369 143579 35 11 9 12 0 5 89 1 0 44 0 2 14 1 0 10 chain 23061 chr18 78077248 + 21701262 21701552 AluSp 311 + 8 293 115344 86 7 0 182 0 2 15 chain 26333 chr18 78077248 + 21718061 21718367 AluSg7 307 - 0 306 98683 306 chain 14098 chr18 78077248 + 21720804 21721042 L1MA2 4263 - 149 380 144228 10 4 3 33 1 0 10 15 8 83 2 1 8 1 0 34 1 5 36 chain 23080 chr18 78077248 + 21722006 21722292 AluSg7 307 + 0 290 115248 45 5 8 78 0 1 158 chain 133266 chr18 78077248 + 21728496 21730078 LTR12C 1709 - 0 1709 27381 68 0 2 297 0 1 4 0 1 108 0 4 106 3 1 5 1 0 254 2 122 130 1 0 26 4 3 487 0 3 66 0 1 20 chain 3030 chr18 78077248 + 21746086 21746137 L1MA3 4352 + 4258 4307 224368 24 8 6 19 chain 7567 chr18 78077248 + 21750466 21750574 5S 121 - 0 108 173749 75 10 0 8 0 10 15 chain 10124 chr18 78077248 + 21759282 21759400 L1PA4 6152 + 6019 6137 159971 118 chain 114101 chr18 78077248 + 21820861 21822260 L1PA7 6471 + 5080 6464 33074 6 0 1 416 5 4 114 1 0 77 0 2 648 11 10 48 27 12 46 chain 82070 chr18 78077248 + 21834116 21835309 L1MA2 4263 + 723 1915 42736 33 0 1 281 16 17 20 0 2 59 1 12 45 0 4 189 17 4 15 8 0 41 13 17 79 16 12 133 1 0 9 0 1 5 2 0 187 1 4 22 chain 29792 chr18 78077248 + 21835320 21836095 MER4A1 472 + 1 461 85493 217 4 0 6 9 34 101 4 3 26 3 17 19 349 0 37 chain 44714 chr18 78077248 + 21877844 21878682 MER41A 554 + 0 554 63368 463 302 18 73 chain 7028 chr18 78077248 + 21888597 21888700 MER3 215 + 0 110 177267 58 7 14 38 chain 9557 chr18 78077248 + 21894800 21894926 MER85 139 - 1 139 162799 22 8 20 96 chain 47630 chr18 78077248 + 21903512 21904021 L1HS 6032 - 0 509 60747 509 chain 151328 chr18 78077248 + 21932370 21934041 L1PA4 6152 + 4480 6151 24426 560 1 0 968 0 1 142 chain 38544 chr18 78077248 + 21937058 21937617 PRIMA4_LTR 623 - 0 623 71374 43 1 4 39 4 8 16 1 0 66 0 1 4 5 4 7 1 0 4 0 4 32 1 2 23 0 4 40 0 5 54 2 4 33 0 45 5 2 0 176 chain 2793 chr18 78077248 + 21946491 21946521 MER21B 843 - 813 843 228855 30 chain 108120 chr18 78077248 + 21955816 21957113 LTR12C 1709 - 7 1709 34681 52 0 131 291 0 4 106 1 158 106 0 118 493 7 1 191 0 1 50 chain 23107 chr18 78077248 + 21972132 21972422 AluSp 311 - 18 311 115105 24 1 3 132 0 1 133 chain 4439 chr18 78077248 + 22005301 22005380 Tigger3a 397 + 160 249 201469 17 4 9 17 4 9 37 chain 29941 chr18 78077248 + 22013148 22013462 AluYb8 318 - 4 318 84995 314 chain 24836 chr18 78077248 + 22019348 22019626 AluY 311 + 29 308 105690 103 0 1 175 chain 24218 chr18 78077248 + 22052841 22053138 AluSx1 309 + 5 298 109114 287 4 0 6 chain 27483 chr18 78077248 + 22060185 22060548 THE1B 368 - 0 368 94707 49 5 13 106 2 0 32 1 0 168 chain 22363 chr18 78077248 + 22087440 22087754 L1MA2 4263 + 3810 4114 118654 143 14 12 93 7 0 47 1 0 9 chain 9604 chr18 78077248 + 22143760 22143987 L1PB3 3668 - 54 252 162578 15 41 33 29 11 9 25 1 0 3 2 0 18 20 4 62 chain 24690 chr18 78077248 + 22163525 22163954 L1MA3 4352 - 24 428 106496 14 8 7 19 8 6 24 2 0 78 1 0 60 48 27 40 5 7 122 chain 30042 chr18 78077248 + 22171641 22172076 MLT2A1 477 + 0 475 84681 46 1 0 115 2 0 7 1 2 159 0 16 32 19 51 7 6 0 40 chain 15715 chr18 78077248 + 22195810 22196027 L1PA8 5853 + 5635 5848 139225 44 1 0 10 1 0 51 2 1 19 1 0 88 chain 559513 chr18 78077248 + 22199006 22205036 L1PA2 6032 - 0 6031 390 5550 0 1 480 chain 25776 chr18 78077248 + 22213691 22213989 AluSc 308 - 10 308 100980 298 chain 3877 chr18 78077248 + 22217528 22217629 MER53 195 - 2 171 209197 12 10 0 14 26 104 39 chain 39285 chr18 78077248 + 22219610 22220133 L1PA8 5853 - 0 519 70344 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 36 0 3 5 1 0 230 chain 7521 chr18 78077248 + 22220151 22220238 L1PA8 5853 + 5212 5299 174030 87 chain 78574 chr18 78077248 + 22222132 22223143 MER11A 1151 - 0 1151 44232 170 1 2 7 1 0 47 0 9 33 17 48 150 0 1 8 0 1 136 0 1 94 0 1 111 0 1 37 6 2 114 0 99 79 chain 26120 chr18 78077248 + 22276170 22276511 THE1B 368 + 0 361 99530 40 0 15 117 1 0 28 2 0 106 5 13 42 chain 555129 chr18 78077248 + 22290778 22296805 L1PA2 6032 - 0 6028 813 1840 0 1 1027 1 0 2681 0 1 226 1 0 182 1 2 68 chain 5639 chr18 78077248 + 22304319 22304461 L1MA5A 2387 + 2263 2380 188669 31 43 23 13 1 0 10 1 0 22 2 0 13 1 0 5 chain 20850 chr18 78077248 + 22370449 22370836 MSTB1 431 + 25 421 124461 31 6 8 99 11 10 36 1 3 52 73 79 78 chain 19517 chr18 78077248 + 22416309 22416517 L1PA3long 6157 - 259 467 128608 208 chain 25834 chr18 78077248 + 22416517 22416809 L1PA3long 6157 + 5862 6153 100732 153 1 0 138 chain 10588 chr18 78077248 + 22419702 22419883 L1MA3 4352 + 4119 4268 157879 116 4 0 24 28 0 9 chain 26434 chr18 78077248 + 22479566 22479897 L1PA7 6471 + 6140 6470 98289 64 6 7 154 1 2 95 3 0 8 chain 518248 chr18 78077248 + 22481121 22487190 L1PA5 6144 + 0 6139 5351 135 29 43 295 5 6 482 0 2 206 9 0 106 0 10 122 0 5 901 2 1 170 1 10 836 25 28 624 0 26 1286 1 0 345 1 2 147 1 11 340 chain 49761 chr18 78077248 + 22589130 22590263 L1PB1 5432 + 4651 5427 59185 49 0 4 354 13 13 27 343 16 24 2 1 5 1 0 12 2 0 3 2 0 9 3 1 51 2 1 15 1 0 41 7 6 13 25 12 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 32645 chr18 78077248 + 22638294 22638764 MER1A 529 - 14 488 79768 50 12 11 46 0 6 53 5 4 133 0 5 110 18 13 43 chain 13473 chr18 78077248 + 22730074 22730377 L1PB1 5432 + 5146 5414 146443 12 8 4 6 2 0 11 5 0 41 2 1 16 1 0 44 1 0 15 25 12 19 8 5 14 2 0 21 6 5 19 1 0 13 1 0 10 chain 15326 chr18 78077248 + 22826013 22826191 L1PA5 6144 + 5957 6136 140405 51 0 1 127 chain 511994 chr18 78077248 + 22846416 22852886 L1PA7 6471 + 0 6467 5977 178 3 4 15 8 7 117 4 0 88 55 33 17 0 1 119 0 1 4 1 0 659 6 5 85 21 22 11 1 0 381 10 9 213 13 17 133 0 1 512 8 0 235 3 2 632 0 8 19 0 1 12 1 0 192 5 11 10 0 1 662 0 2 111 4 5 71 0 2 22 0 1 143 0 3 69 0 1 468 0 5 294 0 3 93 1 0 21 1 0 576 16 17 137 4 0 6 chain 5808 chr18 78077248 + 22880588 22880668 MADE1 96 + 0 96 187065 48 2 18 30 chain 29366 chr18 78077248 + 22892494 22892808 AluYb8 318 + 0 315 87218 131 0 1 183 chain 419260 chr18 78077248 + 22960461 22965891 L1PA7 6471 + 1350 6451 9554 1283 7 0 87 21 4 95 0 1 6 0 3 655 3 2 17 1 0 755 1 2 314 1 0 4 0 1 77 0 1 9 0 4 116 0 1 164 1 0 4 1 2 476 2 1 180 1 0 183 314 0 155 0 1 354 2 0 5 9 11 15 1 2 111 chain 3990 chr18 78077248 + 22976756 22976811 L1ME1 1623 + 1193 1247 207525 17 1 0 37 chain 8284 chr18 78077248 + 22978594 22978985 MLT1B 390 + 12 373 169494 13 7 10 15 5 15 20 237 195 42 1 0 51 chain 8073 chr18 78077248 + 23010936 23011032 L1PA8A 6298 - 7 103 170632 96 chain 27634 chr18 78077248 + 23012662 23013038 THE1C 375 + 0 375 94254 17 1 2 101 3 0 158 0 1 31 5 6 34 1 0 25 chain 21949 chr18 78077248 + 23042488 23042793 L1PA8 5853 - 0 297 120429 93 1 0 19 2 1 44 6 4 13 2 1 70 2 0 46 1 0 6 chain 3253 chr18 78077248 + 23046951 23046987 U5 65 - 29 65 219929 36 chain 37254 chr18 78077248 + 23050979 23051413 L1PA7 6471 - 6 447 73163 6 3 0 137 4 14 284 chain 221246 chr18 78077248 + 23065040 23067397 L1HS 6032 + 3673 6030 17797 2357 chain 24551 chr18 78077248 + 23080403 23080693 AluSp 311 + 11 302 107243 45 1 2 244 chain 3340 chr18 78077248 + 23093176 23093403 ERV3-16A3_LTR 481 + 74 324 218231 13 11 10 30 150 174 23 chain 233552 chr18 78077248 + 23103982 23106657 L1PA5 6144 - 2 2678 17115 840 0 1 7 4 0 272 1 0 117 0 1 282 1 0 277 0 4 822 0 1 52 chain 1627 chr18 78077248 + 23126416 23126656 L1MA3 4352 + 612 846 128429 13 13 9 139 2 0 73 chain 29093 chr18 78077248 + 23127149 23127458 AluYb8 318 - 9 318 88582 309 chain 1465 chr18 78077248 + 23129088 23129304 L1MA3 4352 + 4112 4325 128429 123 4 0 23 2 0 20 9 13 26 1 0 8 chain 12740 chr18 78077248 + 23130149 23130317 MER30 238 - 0 190 149287 45 0 3 32 0 6 26 4 17 61 chain 12679 chr18 78077248 + 23147588 23147773 MER30 238 + 38 238 149545 60 12 0 10 1 28 102 chain 112927 chr18 78077248 + 23150866 23152594 THE1C-int 1605 - 11 1605 33396 47 1 0 4 1 2 55 35 12 138 18 2 83 29 30 369 16 17 169 1 9 147 114 0 58 0 7 268 22 24 153 chain 100493 chr18 78077248 + 23157763 23158909 L1PA5 6144 + 4991 6141 36631 303 2 0 714 0 1 113 0 5 14 chain 50011 chr18 78077248 + 23167008 23167585 L1PA4 6152 + 5565 6141 59010 432 4 1 5 0 2 136 chain 68468 chr18 78077248 + 23205278 23206048 L1PA4 6152 - 9 778 49060 251 1 0 518 chain 24293 chr18 78077248 + 23269462 23269839 THE1C 375 - 0 375 108688 18 0 2 5 1 0 152 22 18 89 13 0 7 1 15 69 chain 23912 chr18 78077248 + 23271351 23271655 AluSg7 307 - 3 307 110855 26 6 5 141 0 1 131 chain 535781 chr18 78077248 + 23296120 23302575 L1PA5 6144 + 3 6141 3480 465 4 1 1115 2 1 123 0 1 54 6 0 63 308 0 1121 1 2 209 1 0 350 1 0 174 2 0 840 0 1 241 0 1 1352 0 1 23 chain 17041 chr18 78077248 + 23310341 23310703 L1PB1 5432 - 12 342 135491 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 14 8 0 13 2 0 4 1 0 15 1 0 44 1 0 16 2 1 53 2 0 6 29 23 24 13 11 13 chain 164099 chr18 78077248 + 23325115 23327202 L1PA10 4194 + 2074 4143 22798 536 4 2 51 9 12 281 21 0 116 1 0 64 0 3 27 0 4 582 7 6 355 8 5 25 chain 22035 chr18 78077248 + 23345260 23345546 AluSg7 307 - 6 298 120088 174 0 1 26 7 12 79 chain 275572 chr18 78077248 + 23354280 23357875 L1PA8 5853 + 2248 5815 14896 220 0 6 124 0 1 289 1 0 31 2 1 46 2 1 30 1 0 283 0 6 218 0 1 518 0 1 293 4 1 117 0 2 19 9 10 50 0 2 165 1 0 183 0 1 139 9 8 378 27 3 53 9 0 116 1 0 44 2 0 71 1 0 4 20 19 34 7 6 10 12 11 52 chain 7666 chr18 78077248 + 23363187 23363392 L1PB1 5432 - 10 196 173133 18 1 0 12 1 0 22 1 0 11 27 0 8 3 25 18 23 12 15 1 0 20 2 3 22 chain 89991 chr18 78077248 + 23370704 23371703 L1PA4 6152 + 5144 6143 39652 57 0 1 99 1 0 842 chain 2943 chr18 78077248 + 23388506 23388538 L1PA8 5853 + 5646 5678 226249 32 chain 12290 chr18 78077248 + 23388540 23388716 L1PA8 5853 + 5679 5853 151042 61 2 1 19 2 1 92 chain 11756 chr18 78077248 + 23438243 23438469 L1MA5A 2387 + 2108 2299 153238 47 2 0 26 12 11 23 3 0 17 28 0 63 1 0 4 chain 4261 chr18 78077248 + 23447522 23447569 L1PA5 6144 + 5991 6038 203731 47 chain 9220 chr18 78077248 + 23447569 23447669 L1PA5 6144 + 6041 6141 164447 100 chain 18659 chr18 78077248 + 23459883 23460168 L1PA16 3655 + 3317 3571 131054 66 30 1 32 7 5 150 chain 27111 chr18 78077248 + 23470714 23471181 L1MA3 4352 + 3862 4282 95898 150 0 1 4 1 0 9 9 4 62 67 31 112 4 0 25 2 0 22 chain 18500 chr18 78077248 + 23478176 23478404 L1PA7 6471 - 4 233 131495 9 0 1 219 chain 5566 chr18 78077248 + 23484691 23484760 Tigger3a 397 - 63 132 189425 69 chain 24943 chr18 78077248 + 23495071 23495441 THE1C 375 - 1 375 105091 73 18 18 85 17 16 17 0 4 149 0 1 11 chain 97585 chr18 78077248 + 23516485 23517925 L1PA11 4918 - 289 1634 37402 18 139 94 9 4 0 20 1 0 17 2 0 55 0 2 20 2 1 68 1 0 115 73 25 161 0 2 359 0 3 376 chain 46556 chr18 78077248 + 23553548 23554102 MER41A 554 - 0 554 61553 554 chain 42247 chr18 78077248 + 23554825 23555664 MER41A 554 + 23 554 66337 19 0 1 387 316 0 39 1 6 44 0 2 33 chain 44341 chr18 78077248 + 23556007 23556539 MER41A 554 + 18 554 63771 390 0 4 142 chain 22838 chr18 78077248 + 23592818 23593117 AluSp 311 - 12 310 116402 56 1 0 30 2 1 66 8 9 136 chain 23134 chr18 78077248 + 23627520 23627819 AluY 311 + 1 288 114973 21 4 0 104 1 0 131 8 1 30 chain 15423 chr18 78077248 + 23630684 23630876 AluYa5 310 + 97 285 140122 29 4 0 159 chain 23648 chr18 78077248 + 23635715 23636020 AluSc 308 - 15 308 112316 15 15 4 143 1 0 131 chain 29674 chr18 78077248 + 23693958 23694340 MSTA-int 1630 + 1223 1606 85929 146 11 12 225 chain 7294 chr18 78077248 + 23694745 23694836 L1PREC2 3366 - 851 942 175483 91 chain 124958 chr18 78077248 + 23701429 23703759 L1PA11 4918 + 49 2260 29405 28 15 11 23 1 0 19 2 0 50 1 0 26 0 3 6 11 5 225 0 2 68 0 2 106 1 0 200 11 9 60 571 457 46 1 9 83 2 0 52 0 2 153 2 1 4 0 1 113 4 1 135 0 3 198 21 18 92 chain 30419 chr18 78077248 + 23708127 23708516 MLT2A1 477 + 0 383 83653 169 4 1 11 4 0 23 4 5 174 chain 4877 chr18 78077248 + 23708665 23708742 MSTA 426 + 348 426 196518 30 9 10 38 chain 14437 chr18 78077248 + 23729989 23730199 Tigger4a 237 + 29 237 143088 143 1 0 6 1 8 30 13 5 16 chain 87673 chr18 78077248 + 23767381 23769880 L1MA2 4263 + 405 4028 40504 78 5 3 73 0 1 231 7 5 217 0 1 25 5 6 45 4 1 227 1207 2340 4 1 0 144 3 0 58 1 0 5 8 10 79 1 0 5 13 12 53 chain 5439 chr18 78077248 + 23773656 23773721 MER1B 344 - 78 143 190615 65 chain 76944 chr18 78077248 + 23781798 23782766 LTR5_Hs 974 - 0 974 45002 103 2 0 37 8 15 163 1 0 121 5 6 61 0 1 177 0 1 122 1 0 167 chain 39692 chr18 78077248 + 23811638 23812179 LTR12F 595 - 0 595 69763 62 1 2 166 0 1 145 0 82 31 36 6 100 chain 183762 chr18 78077248 + 23813642 23818505 HERV9-int 5642 - 223 5115 9136 189 1 0 1223 5 7 110 2 1 444 8 13 407 1 14 70 0 6 432 4 5 841 0 1 73 3 1 24 0 1 312 6 7 97 3 0 5 9 21 269 2 0 130 6 0 111 11 9 24 0 4 41 chain 524903 chr18 78077248 + 23818554 23824667 L1PA5 6144 - 1 6144 4693 10 3 1 124 6 7 9 1 0 690 0 3 809 0 4 710 5 6 594 1 0 208 0 1 590 0 1 534 0 1 512 0 4 100 0 1 52 13 4 221 0 4 273 5 12 176 8 9 269 1 0 26 6 7 37 1 15 119 chain 19914 chr18 78077248 + 23824675 23825202 HERV9-int 5642 - 5115 5642 9136 527 chain 39339 chr18 78077248 + 23825222 23825764 LTR12F 595 - 0 595 70268 232 0 1 147 0 82 15 0 1 5 20 14 14 26 1 83 chain 4811 chr18 78077248 + 23836849 23836931 MADE1 96 + 0 96 197221 23 5 3 16 1 17 37 chain 121242 chr18 78077248 + 23839251 23840606 L1PA5 6144 - 1 1360 30622 134 0 1 709 0 3 512 chain 28726 chr18 78077248 + 23841136 23841463 AluYa5 310 - 2 310 90226 75 19 0 233 chain 6106 chr18 78077248 + 23879148 23879219 U3 216 - 145 216 184369 71 chain 11595 chr18 78077248 + 23975021 23975195 Tigger3a 397 - 74 258 153916 16 0 4 40 2 0 58 1 5 17 1 5 39 chain 70590 chr18 78077248 + 24010958 24011962 L1MA3 4352 - 486 1502 48117 97 1 0 9 3 1 21 11 13 29 12 14 5 2 0 38 4 17 72 1 0 5 25 21 320 0 1 204 0 1 94 0 3 51 chain 13847 chr18 78077248 + 24097154 24097334 THE1B 368 + 0 181 145079 15 2 0 25 0 5 127 2 0 9 chain 34864 chr18 78077248 + 24138117 24138605 L1MA2 4263 + 3611 4085 76390 51 1 0 19 1 0 111 17 14 150 11 9 93 7 0 27 chain 13650 chr18 78077248 + 24142615 24142933 MLT1B 390 - 24 363 145779 116 96 108 16 10 11 5 1 0 43 5 14 26 chain 4820 chr18 78077248 + 24160791 24160860 MER58B 340 + 138 207 197125 5 2 0 5 0 2 57 chain 15423 chr18 78077248 + 24182836 24183111 L1PA14 3548 + 3015 3284 140123 99 4 0 17 0 6 6 32 24 18 0 1 35 21 20 43 chain 11313 chr18 78077248 + 24211301 24211443 Tigger3a 397 - 106 258 155020 121 0 10 21 chain 3015 chr18 78077248 + 24215597 24215679 MER5A1 166 - 39 129 224742 15 34 41 18 0 1 15 chain 12869 chr18 78077248 + 24257070 24257213 L1PA4 6152 - 16 159 148756 143 chain 19388 chr18 78077248 + 24271407 24271767 THE1C 375 + 0 375 128979 104 34 38 31 65 76 126 chain 3777 chr18 78077248 + 24273485 24273528 L1MB1 2102 - 389 432 210701 43 chain 37524 chr18 78077248 + 24315343 24315758 L1PA4 6152 + 5735 6151 72784 266 0 1 149 chain 2915 chr18 78077248 + 24333379 24333412 MLT2D 439 - 0 33 226784 33 chain 20383 chr18 78077248 + 24345787 24346047 L1PA5 6144 + 5900 6142 125950 94 15 1 140 4 0 7 chain 25942 chr18 78077248 + 24354796 24355156 L1PB2 3958 - 120 477 100239 63 1 0 22 2 0 74 1 0 61 1 0 35 1 2 13 0 2 18 7 6 61 chain 272259 chr18 78077248 + 24377600 24381829 L1MA2 4263 + 4 4105 15066 20 1 0 45 0 4 89 14 0 87 5 4 31 5 6 39 0 7 53 18 29 74 1 0 163 4 5 79 10 9 4 0 1 180 3 4 237 0 1 65 15 17 49 10 5 90 3 7 267 14 16 5 2 0 85 0 1 54 0 1 5 0 3 28 31 0 73 0 4 20 37 0 275 0 1 79 1 0 4 0 1 29 1 2 14 1 0 241 6 29 56 5 0 34 12 14 26 51 2 32 1 2 76 0 5 16 5 6 145 4 0 97 0 1 44 0 2 28 6 9 83 41 12 68 0 1 54 9 13 50 3 4 11 8 23 7 2 0 12 33 0 6 4 1 5 1 0 64 11 10 132 13 10 149 12 10 67 46 39 34 chain 111031 chr18 78077248 + 24395653 24396879 L1PA4 6152 - 9 1237 33922 104 0 1 147 0 1 975 chain 14818 chr18 78077248 + 24416205 24416417 Ricksha_0 1343 + 1091 1299 141890 93 4 2 43 0 2 45 1 0 10 1 0 8 2 0 5 chain 22367 chr18 78077248 + 24422356 24422615 L1PA7 6471 - 2 261 118641 259 chain 26893 chr18 78077248 + 24424715 24425089 THE1C 375 + 0 375 96654 115 8 5 64 9 10 89 0 2 28 0 1 61 chain 90297 chr18 78077248 + 24427833 24428851 L1PA5 6144 + 5128 6144 39537 166 1 0 597 1 0 253 chain 118287 chr18 78077248 + 24482943 24484510 THE1C-int 1605 - 15 1589 31696 31 1 0 215 5 6 577 8 2 164 0 1 136 11 18 40 0 2 63 0 6 220 14 11 82 chain 25157 chr18 78077248 + 24498826 24499193 THE1B 368 - 0 368 103973 56 7 6 63 2 1 12 13 16 14 1 0 8 0 2 21 1 0 169 chain 73486 chr18 78077248 + 24507240 24508203 LTR5_Hs 974 - 0 974 46793 43 14 8 82 4 24 34 7 7 116 0 1 151 10 1 45 0 4 219 0 1 238 chain 66236 chr18 78077248 + 24526559 24527313 L1PA7 6471 - 1076 1830 49798 218 0 1 227 1 0 308 chain 87819 chr18 78077248 + 24527313 24528365 L1PA7 6471 + 5404 6469 40441 210 0 3 8 1 0 43 1 5 30 0 1 102 0 1 592 0 1 54 0 4 11 chain 52718 chr18 78077248 + 24538391 24539283 L1PA16 3655 + 2688 3590 57177 24 17 7 49 0 10 66 10 12 66 14 13 24 7 16 104 34 37 88 9 8 35 18 19 24 2 0 32 0 1 93 7 9 57 3 1 8 1 2 86 3 0 11 chain 10607 chr18 78077248 + 24540538 24540663 MER85 139 + 4 139 157795 85 0 10 40 chain 23755 chr18 78077248 + 24575116 24575421 AluY 311 + 11 302 111739 112 18 4 175 chain 3135 chr18 78077248 + 24585618 24585656 MIR 256 - 120 158 222251 38 chain 26865 chr18 78077248 + 24632668 24633050 L1PA8 5853 + 5476 5852 96758 84 1 0 49 17 15 54 5 4 58 2 1 19 2 1 91 chain 5638 chr18 78077248 + 24641038 24641106 MER84 505 + 0 69 188679 29 0 1 39 chain 66878 chr18 78077248 + 24642131 24642884 L1PA5 6144 - 4 758 49693 380 0 1 373 chain 368143 chr18 78077248 + 24669109 24673825 L1PA6 6164 - 2 6147 11153 64 0 4 590 309 0 512 0 1 299 0 1 48 1 0 145 0 1 918 0 1 22 15 17 348 11 10 338 5 6 200 0 1727 114 0 9 59 18 8 153 1 0 47 0 2 279 0 2 220 chain 38772 chr18 78077248 + 24677538 24677980 L1PA8 5853 - 988 1430 71050 442 chain 55730 chr18 78077248 + 24677981 24678708 L1PA8 5853 + 4902 5633 55281 108 0 2 62 0 12 7 24 11 141 0 6 313 1 0 44 2 0 25 chain 24549 chr18 78077248 + 24721040 24721333 AluY 311 + 0 287 107257 130 6 0 157 chain 15854 chr18 78077248 + 24723702 24723922 L1PA8 5853 + 5637 5853 138789 42 1 0 6 4 3 48 8 7 17 1 0 93 chain 23777 chr18 78077248 + 24727020 24727322 AluSp 311 - 4 303 111608 175 3 0 124 chain 96965 chr18 78077248 + 24728223 24729289 L1PA4 6152 - 1 1068 37571 948 0 1 118 chain 517511 chr18 78077248 + 24738074 24743924 L1PA4 6152 - 0 6150 5422 6 0 5 798 4 0 238 0 1 2510 0 3 1000 0 297 420 1 0 319 1 0 553 chain 28843 chr18 78077248 + 24797188 24797497 AluYa5 310 + 0 307 89699 132 2 0 175 chain 112305 chr18 78077248 + 24799901 24801356 HERVL-int 5654 + 0 1457 33588 32 6 5 251 20 20 115 0 2 372 0 1 659 chain 60222 chr18 78077248 + 24804622 24805351 LTR12 884 - 0 884 52717 417 0 1 90 2 0 11 0 157 183 1 0 25 chain 28450 chr18 78077248 + 24805763 24806124 MER48 407 + 17 398 91368 13 0 1 4 1 0 98 1 21 244 chain 31182 chr18 78077248 + 24810555 24811008 LTR7B 505 + 0 496 82192 105 0 10 60 0 38 12 3 27 28 29 0 42 0 1 42 1 0 23 0 1 52 14 13 42 chain 42945 chr18 78077248 + 24811217 24812176 LTR10C 591 - 0 591 65482 57 6 11 12 5 7 129 6 7 231 377 0 97 1 2 38 chain 23770 chr18 78077248 + 24811670 24812034 LTR7 482 - 6 482 111649 98 21 27 45 0 1 44 5 37 73 0 50 42 13 36 23 chain 34976 chr18 78077248 + 24812223 24812669 LTR7 482 + 0 482 76219 110 0 5 139 2 0 9 1 32 124 12 14 49 chain 38599 chr18 78077248 + 24846516 24847171 L1PB1 5432 + 4790 5420 71294 105 0 12 122 8 1 14 7 0 18 0 1 40 0 14 18 14 0 12 1 0 9 17 11 41 0 2 10 0 2 14 1 0 44 1 0 9 33 22 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 545004 chr18 78077248 + 24859515 24865534 L1PA3long 6157 + 1 6152 2073 151 0 1 211 0 1 412 1 129 101 0 1 846 0 1 4297 chain 20006 chr18 78077248 + 24895599 24895920 THE1B 368 + 0 321 127125 61 50 49 62 4 3 25 2 0 87 0 4 30 chain 35197 chr18 78077248 + 24910822 24911284 L1PA8 5853 - 1 459 75924 92 1 0 19 2 1 30 7 11 11 1 0 9 1 0 71 2 0 44 1 0 43 1 0 127 chain 39583 chr18 78077248 + 24929240 24929818 MER41E 591 + 0 583 69915 102 19 19 165 2 1 26 0 3 73 38 39 24 0 1 25 0 1 104 chain 18839 chr18 78077248 + 24933966 24934196 AluY 311 + 83 311 130547 40 6 4 184 chain 22767 chr18 78077248 + 24991387 24991771 MSTA 426 - 0 426 116742 46 6 0 63 1 21 37 53 57 54 17 41 107 chain 29472 chr18 78077248 + 25019920 25020264 AluYb8 318 + 0 318 86745 132 3 0 129 23 0 57 chain 26360 chr18 78077248 + 25056545 25056824 SVA_D 2077 + 1781 2060 98572 279 chain 549142 chr18 78077248 + 25089975 25095990 L1PA2 6032 + 3 6016 1562 253 1 0 2313 1 0 437 0 2 73 2 0 2935 chain 143676 chr18 78077248 + 25111299 25112881 L1PA3long 6157 + 4569 6152 25534 54 1 3 15 1 0 1511 chain 17423 chr18 78077248 + 25146842 25147048 AluY 311 + 83 291 134453 49 0 1 148 0 1 9 chain 11193 chr18 78077248 + 25147075 25147209 AluSq2 311 + 173 307 155448 134 chain 49849 chr18 78077248 + 25149217 25149882 LTR12_ 688 - 0 688 59120 516 6 5 21 24 8 24 1 42 47 1 0 25 chain 61812 chr18 78077248 + 25192576 25193452 L1PA7 6471 + 5650 6464 51990 45 1 2 84 13 15 308 55 8 245 26 8 99 chain 7078 chr18 78077248 + 25195132 25195235 L1PA8 5853 - 37 138 176900 55 2 1 19 2 1 25 chain 3171 chr18 78077248 + 25196129 25196164 MER57B1 401 - 366 401 221550 35 chain 20854 chr18 78077248 + 25243389 25243751 THE1B 368 - 0 368 124444 56 11 10 60 67 73 52 5 6 111 chain 97146 chr18 78077248 + 25252922 25254381 LTR12C 1709 - 0 1709 37527 84 1 0 47 0 8 142 87 0 115 10 13 72 44 13 59 0 47 114 2 0 43 0 277 100 7 6 73 7 32 98 0 2 78 17 16 18 1 2 220 3 13 17 chain 27875 chr18 78077248 + 25273051 25273560 L1PA15 4387 - 36 551 93438 22 5 0 13 2 0 46 19 35 16 5 4 7 4 0 23 2 1 53 1 0 26 3 2 37 1 0 63 16 26 45 1 0 30 1 0 10 3 1 55 chain 40681 chr18 78077248 + 25274905 25275547 LTR9B 643 + 5 643 68323 58 0 3 135 3 0 2 0 5 17 0 1 98 13 14 52 5 0 31 32 31 50 5 12 11 11 1 62 17 15 40 chain 6801 chr18 78077248 + 25275547 25275630 L1PREC2 3366 - 1068 1151 178950 83 chain 46259 chr18 78077248 + 25300710 25301215 L1PA4 6152 + 5646 6151 61804 505 chain 4962 chr18 78077248 + 25307787 25307845 L1MA5A 2387 - 95 153 195570 58 chain 555309 chr18 78077248 + 25317698 25323714 L1PA2 6032 - 8 6031 791 1788 0 4 3319 0 1 281 0 1 571 0 1 57 chain 12215 chr18 78077248 + 25323736 25323891 THE1D 372 - 218 372 151366 103 1 0 51 chain 35663 chr18 78077248 + 25334589 25335016 L1PA7 6471 - 2 429 75318 427 chain 7806 chr18 78077248 + 25340399 25340513 MER58B 340 - 98 206 172274 65 0 1 36 7 0 6 chain 12257 chr18 78077248 + 25382646 25382906 L1MA4 2864 + 2393 2653 151170 40 40 39 29 1 0 20 22 24 64 1 2 32 2 1 9 chain 19282 chr18 78077248 + 25383163 25383511 THE1D 372 + 0 372 129282 27 17 17 13 8 18 65 5 6 35 9 14 43 0 6 11 1 0 35 0 4 40 13 12 26 chain 5655 chr18 78077248 + 25394912 25394983 LTR48B 642 - 118 189 188521 71 chain 174503 chr18 78077248 + 25400871 25402803 L1PA4 6152 - 1 1932 21539 339 1 0 1592 chain 205752 chr18 78077248 + 25430923 25433214 L1PA4 6152 - 9 2301 18805 12 0 2 237 1 0 2041 chain 43082 chr18 78077248 + 25437065 25437753 L1PA13 3608 - 166 846 65314 39 16 12 26 18 16 13 2 1 62 7 5 84 25 24 28 1 0 74 9 7 5 0 2 109 0 2 88 1 2 81 chain 16432 chr18 78077248 + 25446434 25446714 L1PA17 2846 + 2409 2693 137114 109 2 0 16 8 7 28 13 23 8 1 0 32 1 0 15 11 10 36 chain 6482 chr18 78077248 + 25448537 25448683 L1PB1 5432 + 5236 5366 181377 43 2 1 16 1 0 6 18 9 14 10 7 14 2 0 20 chain 4233 chr18 78077248 + 25476920 25476971 MER90 571 - 0 51 204128 51 chain 27792 chr18 78077248 + 25485116 25485458 THE1A 353 - 12 353 93727 139 1 0 92 1 0 62 0 1 47 chain 127779 chr18 78077248 + 25485458 25487034 THE1A-int 1579 - 0 1579 28623 867 0 1 171 10 7 11 1 2 63 2 3 344 1 4 106 chain 25195 chr18 78077248 + 25487034 25487366 THE1A 353 - 0 336 103767 9 0 4 138 1 0 49 0 1 42 2 1 61 0 1 30 chain 9667 chr18 78077248 + 25490319 25490479 MLT1A1 405 - 0 218 162261 105 13 22 11 8 57 23 chain 19292 chr18 78077248 + 25504253 25504467 L1PA5 6144 - 0 214 129262 214 chain 6280 chr18 78077248 + 25504985 25505061 L1MC4 1079 - 441 517 182943 76 chain 102154 chr18 78077248 + 25505518 25506737 L1PA7 6471 - 2 1227 36222 5 3 0 25 0 1 129 0 1 23 1 0 472 0 2 113 0 2 79 0 3 275 0 1 94 chain 11962 chr18 78077248 + 25535199 25535343 L1PA7 6471 + 6328 6470 152357 132 2 0 10 chain 2925 chr18 78077248 + 25545073 25545105 MIRb 242 - 143 175 226584 32 chain 19614 chr18 78077248 + 25588478 25588714 L1PA6 6164 + 5924 6162 128356 176 0 2 60 chain 64066 chr18 78077248 + 25597666 25598526 L1PB1 5432 + 3251 4139 50981 298 0 2 17 8 11 16 4 8 132 19 43 104 7 0 216 0 2 39 chain 18294 chr18 78077248 + 25656518 25656727 L1PA5 6144 - 12 221 132092 209 chain 27331 chr18 78077248 + 25683481 25683833 L1PA7 6471 - 14 367 95167 23 1 2 108 1 0 8 10 11 201 chain 25595 chr18 78077248 + 25723749 25724127 L1PA8 5853 + 5483 5853 101750 38 1 0 43 1 0 44 9 7 64 5 4 7 1 0 49 6 5 16 2 1 92 chain 19543 chr18 78077248 + 25791398 25792061 HERVH48-int 3304 - 59 627 128539 18 0 1 7 84 68 63 65 49 68 6 3 45 1 0 5 2 0 23 1 0 9 13 5 25 9 5 9 3 0 27 156 116 17 2 0 5 chain 61733 chr18 78077248 + 25793121 25793848 L1PA7 6471 - 7 739 52022 148 0 1 415 0 2 147 2 3 9 0 1 6 chain 483846 chr18 78077248 + 25801942 25809087 L1PA6 6164 - 2 6164 7595 6 4 0 449 0 2 97 0 2 284 0 4 193 0 1 624 0 4 459 0 1 275 8 9 708 1259 0 77 1 2 66 1 0 91 4 0 252 0 1 229 0 2 106 20 28 738 0 1 215 36 284 483 11 10 47 0 1 232 2 3 84 0 8 84 chain 112863 chr18 78077248 + 25805059 25806308 L1PA3long 6157 - 0 1249 33411 849 0 1 55 1 0 344 chain 18093 chr18 78077248 + 25810581 25810801 L1PA3long 6157 + 5944 6157 132610 75 15 8 130 chain 93713 chr18 78077248 + 25813453 25814725 HSMAR1 1287 - 0 1287 38433 80 6 0 281 9 15 160 8 7 65 1 11 111 9 8 321 3 11 91 2 1 125 chain 537713 chr18 78077248 + 25820412 25826404 L1PA3long 6157 + 4 6142 3203 148 0 1 173 0 3 442 5 133 2370 0 5 79 0 2 219 0 1 107 1 0 1165 0 7 1283 chain 29997 chr18 78077248 + 25827891 25828209 AluYb9 318 - 0 318 84822 318 chain 46333 chr18 78077248 + 25834244 25834838 L1PA8A 6298 + 5148 5744 61740 338 2 1 42 0 2 25 9 10 178 chain 6162 chr18 78077248 + 25840074 25840240 L1MA4A 3247 + 3007 3168 183865 74 74 69 18 chain 16933 chr18 78077248 + 25840330 25840538 L1PA7 6471 + 6257 6465 135770 40 0 1 9 2 1 157 chain 24654 chr18 78077248 + 25866423 25866709 L1PA7 6471 + 6178 6464 106698 286 chain 202972 chr18 78077248 + 25873870 25876205 L1PA4 6152 - 0 2346 18998 11 0 6 11 0 1 70 16 17 31 5 6 187 1 0 93 0 1 1362 0 2 548 chain 57383 chr18 78077248 + 25876205 25876861 L1PA4 6152 + 3136 3794 54204 175 1 0 197 0 1 103 0 2 180 chain 17820 chr18 78077248 + 25886275 25886544 AluY 311 + 57 311 133332 74 26 9 128 10 12 31 chain 50913 chr18 78077248 + 25887011 25887674 THE1B-int 1605 + 941 1604 58359 44 6 7 15 9 8 127 4 8 184 4 0 270 chain 20789 chr18 78077248 + 25887675 25887996 THE1B 368 + 0 344 124653 44 9 24 100 2 0 30 35 45 101 chain 4645 chr18 78077248 + 25916076 25916176 LTR33 499 + 401 499 199120 39 29 27 32 chain 24032 chr18 78077248 + 25922861 25923146 L1PA4 6152 + 5859 6143 110158 139 1 0 145 chain 30430 chr18 78077248 + 25923768 25924199 MER1A 529 - 8 433 83576 17 9 14 21 13 12 87 10 0 274 chain 12445 chr18 78077248 + 25950682 25950900 L1PB 1623 + 1317 1525 150480 33 0 1 95 1 0 7 2 1 29 27 19 14 1 0 9 chain 17141 chr18 78077248 + 25962484 25962839 THE1C 375 + 0 375 135201 15 2 0 29 0 9 17 20 21 18 14 16 5 2 0 49 0 2 5 55 63 43 0 2 81 chain 41752 chr18 78077248 + 25975273 25975778 L1PA7 6471 + 5970 6466 66955 221 9 1 95 1 0 179 chain 322785 chr18 78077248 + 25996508 26000000 L1PA2 6032 - 5 3499 12495 145 0 1 2429 0 1 918 chain 230638 chr18 78077248 + 26000000 26002525 L1HS 6032 - 3499 6025 17274 461 0 1 2064 chain 26878 chr18 78077248 + 26004547 26004909 THE1A 353 + 0 353 96706 110 1 0 92 1 0 86 0 1 10 13 5 49 chain 111424 chr18 78077248 + 26053268 26054856 THE1A-int 1579 + 0 1579 33830 109 0 1 195 0 1 141 0 1 182 37 0 9 7 48 240 1 0 6 25 12 258 40 39 17 0 1 18 11 10 40 13 12 239 chain 3962 chr18 78077248 + 26067541 26067657 L1MD1 2063 + 184 298 207943 18 2 1 22 45 44 29 chain 43410 chr18 78077248 + 26068732 26069224 L1PA5 6144 - 2407 2898 64814 235 1 0 256 chain 209178 chr18 78077248 + 26069224 26071607 L1PA5 6144 + 3752 6131 18552 590 3 7 151 0 1 642 3 0 3 6 0 46 0 1 588 2 1 349 chain 28583 chr18 78077248 + 26130339 26130643 AluYb8 318 - 14 318 90809 304 chain 7994 chr18 78077248 + 26136138 26136274 Ricksha_b 1102 - 901 1046 171097 86 3 14 10 17 15 20 chain 2437 chr18 78077248 + 26141766 26141835 MER33 330 - 41 109 233889 28 28 27 13 chain 79270 chr18 78077248 + 26157757 26158638 L1PA3long 6157 + 4943 5824 43928 881 chain 30262 chr18 78077248 + 26158638 26158968 L1PA3long 6157 + 5825 6155 84032 330 chain 3262 chr18 78077248 + 26209147 26209183 MLT1E3 631 + 60 96 219765 36 chain 57532 chr18 78077248 + 26210051 26210712 L1PA6 6164 + 5499 6160 54218 661 chain 94905 chr18 78077248 + 26233769 26235024 L1PA7 6471 + 5212 6470 38121 120 29 26 227 0 1 34 2 1 188 21 24 303 0 2 165 18 19 148 chain 39125 chr18 78077248 + 26239847 26240329 L1P3 4156 - 1040 1522 70567 146 9 10 58 2 1 267 chain 179895 chr18 78077248 + 26240329 26242534 L1PA7 6471 + 4243 6465 21002 36 0 3 350 1 2 321 4 2 34 2 1 20 3 4 145 0 4 63 1 0 50 3 15 308 0 1 22 1 4 138 1 0 547 3 0 5 16 19 122 3 0 6 chain 19492 chr18 78077248 + 26267666 26267978 L1PA8 5853 + 5549 5853 128678 15 11 10 34 2 0 47 1 0 24 1 0 8 8 9 5 2 0 39 2 1 19 1 0 93 chain 27521 chr18 78077248 + 26273000 26273423 LTR7Y 441 - 10 441 94596 90 6 7 90 68 84 57 9 0 103 chain 290274 chr18 78077248 + 26274770 26278412 HERVH-int 3825 - 0 3825 14003 225 0 2 260 10 220 37 9 11 55 2 1 664 0 4 48 0 1 157 0 3 112 0 10 299 7 33 241 0 1 532 7 0 7 8 15 51 0 3 52 0 3 9 0 2 16 1 2 37 1 21 35 1 0 4 61 0 21 0 32 9 4 0 10 1 0 10 1 0 7 0 1 29 5 0 88 64 0 445 chain 28862 chr18 78077248 + 26278421 26278845 LTR7Y 441 - 10 441 89613 187 68 84 57 9 0 103 chain 42943 chr18 78077248 + 26278994 26279481 LTR2C 499 - 0 486 65485 64 1 0 422 chain 15845 chr18 78077248 + 26290291 26290498 MER2 342 + 82 287 138809 34 2 0 171 chain 2802 chr18 78077248 + 26295358 26295388 MLT1J2 417 - 50 80 228716 30 chain 9338 chr18 78077248 + 26311341 26311459 LTR8 732 + 592 714 163862 106 0 4 12 chain 27555 chr18 78077248 + 26315124 26315428 AluYg6 310 + 0 299 94488 131 3 0 40 2 0 128 chain 71634 chr18 78077248 + 26329264 26330097 L1P1 4361 + 3510 4341 47636 351 0 1 289 1 0 154 1 0 23 2 1 12 chain 6300 chr18 78077248 + 26346594 26346695 MLT1A0 366 + 0 102 182799 46 11 12 44 chain 29100 chr18 78077248 + 26363758 26364068 AluYa5 310 + 0 309 88551 132 1 0 177 chain 30574 chr18 78077248 + 26449929 26450362 L1PA2 6032 - 0 462 83252 315 12 38 18 41 44 47 chain 62735 chr18 78077248 + 26458416 26459128 L1PA5 6144 - 12 724 51569 712 chain 44465 chr18 78077248 + 26459128 26459653 L1P1 4361 + 3130 3654 63617 35 1 0 6 0 1 338 1 0 144 chain 58695 chr18 78077248 + 26465681 26466425 L1PA8 5853 - 11 781 53582 81 5 4 16 2 1 52 15 13 65 2 0 46 1 0 381 0 32 5 1 0 59 0 2 13 chain 24265 chr18 78077248 + 26487995 26488278 AluSg7 307 - 8 307 108874 70 1 17 212 chain 14873 chr18 78077248 + 26520228 26520486 MER30 238 - 0 238 141706 78 20 7 29 13 0 9 4 0 6 8 18 91 chain 96552 chr18 78077248 + 26522146 26523187 L1PA2 6032 + 4988 6029 37678 1041 chain 82915 chr18 78077248 + 26561126 26562126 L1PA7 6471 + 5465 6466 42373 149 0 1 591 6 7 4 1 0 249 chain 120712 chr18 78077248 + 26566215 26567576 L1PA5 6144 + 4772 6132 30791 21 0 1 96 4 1 556 0 1 684 chain 4184 chr18 78077248 + 26570882 26570956 L1MD1 2063 - 1480 1562 204777 31 2 0 5 9 19 27 chain 28965 chr18 78077248 + 26580313 26580721 LTR7 482 - 0 482 89153 49 12 14 110 0 1 11 0 31 41 0 1 109 22 61 54 chain 42575 chr18 78077248 + 26582560 26583106 MER41A 554 - 0 553 65934 30 1 0 163 0 3 47 9 14 296 chain 5017 chr18 78077248 + 26587622 26587777 MER4D 903 - 9 162 194953 22 1 0 21 2 3 12 66 64 31 chain 68720 chr18 78077248 + 26621119 26621945 L1PA7 6471 - 4 822 48935 147 6 0 73 0 1 43 4 0 441 0 1 112 chain 89977 chr18 78077248 + 26626376 26627731 L1PA11 4918 - 416 3555 39658 14 2 1 14 3 1 68 2 0 10 2 1 65 1 0 119 6 9 19 0 1 68 8 9 142 1 0 70 0 1 57 23 29 101 7 8 39 7 9 16 0 1773 42 2 3 94 4 0 152 0 5 105 0 3 45 2 1 45 chain 324971 chr18 78077248 + 26628947 26632964 L1PA7 6471 - 15 4120 12392 132 3 4 11 16 15 132 0 3 313 0 1 145 4 6 48 6 7 18 1 0 389 0 4 403 2 0 104 12 9 399 0 69 123 15 0 8 1 19 481 2 1 512 0 4 35 0 3 426 0 1 110 0 2 43 0 1 69 0 1 54 chain 9128 chr18 78077248 + 26662982 26663168 L1PB1 5432 + 5245 5411 164921 36 1 0 15 19 0 6 0 7 19 6 4 14 2 0 24 1 0 19 6 5 10 1 0 7 chain 8307 chr18 78077248 + 26694315 26694407 AluY 311 + 40 132 169355 92 chain 5409 chr18 78077248 + 26709976 26710051 MLT1B 390 + 304 380 190903 22 5 6 48 chain 3829 chr18 78077248 + 26727211 26727270 FAM 185 + 35 132 209948 13 1 39 45 chain 213891 chr18 78077248 + 26730578 26732903 L1PA2 6032 - 8 2333 18237 143 1 0 190 0 1 1991 chain 77563 chr18 78077248 + 26746726 26748057 L1MA1 4479 - 323 1613 44708 5 1 0 9 1 0 21 15 14 15 0 1 11 12 11 112 9 6 4 1 0 88 1 0 14 35 32 57 2 1 13 10 8 20 1 0 47 26 22 93 9 3 30 3 1 76 7 8 44 4 0 6 2 3 70 11 6 42 2 0 9 6 4 87 10 8 145 0 2 22 2 0 28 1 0 92 chain 29532 chr18 78077248 + 26748059 26748369 AluYa5 310 - 0 310 86516 310 chain 5425 chr18 78077248 + 26776410 26776490 MADE1 96 - 0 96 190750 38 5 21 37 chain 65892 chr18 78077248 + 26777463 26778491 L1PB1 5432 + 4484 5420 50145 142 4 0 477 40 3 11 18 1 20 1 0 9 1 0 10 16 10 53 3 1 15 1 0 41 8 7 12 3 0 6 15 6 11 3 1 7 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 204009 chr18 78077248 + 26799020 26801331 L1PA5 6144 + 3748 6132 18926 596 0 4 521 0 1 239 0 62 126 3 7 665 1 3 160 chain 4881 chr18 78077248 + 26822195 26822256 LTR33B 472 - 63 124 196476 61 chain 65019 chr18 78077248 + 26877361 26878251 HERVL-int 5654 - 421 1323 50566 8 0 1 6 1 0 109 11 13 193 8 11 130 0 6 303 31 32 90 chain 44617 chr18 78077248 + 26936314 26936901 LTR10F 562 - 0 562 63462 125 7 6 61 4 5 134 1 4 121 28 0 106 chain 196904 chr18 78077248 + 26937200 26939949 HERVIP10FH-int 2884 - 60 2734 19434 35 24 17 17 1 0 50 1 0 66 1 0 166 0 1 97 2 1 100 1 0 20 7 6 77 4 6 115 1 0 54 22 31 178 32 26 42 22 10 40 93 56 18 4 0 126 6 0 63 1 0 9 1 0 9 26 20 164 2 0 28 2 1 967 2 0 14 9 14 30 chain 40714 chr18 78077248 + 26942112 26942596 LTR10F 562 - 0 562 68284 177 0 19 104 0 59 203 chain 8363 chr18 78077248 + 26971683 26971795 THE1B-int 1605 + 1494 1605 169063 69 1 0 42 chain 61684 chr18 78077248 + 26978829 26979607 LTR17 781 - 8 781 52044 36 4 5 320 21 16 69 1 0 327 chain 39349 chr18 78077248 + 27000305 27001984 HERVK22-int 3844 - 0 1007 70256 21 1 0 73 1 0 78 861 242 20 218 173 37 5 3 17 1 0 37 1 0 19 7 5 75 1 0 58 5 6 143 chain 21419 chr18 78077248 + 27051626 27052010 MER57B1 401 - 5 401 122450 4 1 0 27 73 85 108 20 21 151 chain 71300 chr18 78077248 + 27053081 27053963 L1PA8A 6298 - 858 1759 47796 20 3 4 151 1 0 5 1 22 134 1 3 482 0 1 62 5 0 17 chain 65117 chr18 78077248 + 27053971 27054827 L1PA8A 6298 + 5442 6291 50520 47 2 1 73 8 1 611 15 16 100 chain 105041 chr18 78077248 + 27088972 27090142 L1PA4 6152 - 0 1177 35495 6 0 2 142 0 1 695 1 5 326 chain 85696 chr18 78077248 + 27132317 27133250 L1PA3long 6157 - 0 932 41269 259 1 0 673 chain 105678 chr18 78077248 + 27133250 27134402 L1PA3long 6157 + 4033 5185 35333 1152 chain 7183 chr18 78077248 + 27137369 27137447 L1PA4 6152 + 6073 6151 176188 78 chain 13410 chr18 78077248 + 27142756 27143057 L1PB1 5432 - 40 310 146671 22 1 0 16 33 28 18 1 0 12 11 0 16 1 0 44 1 0 15 2 1 11 0 1 38 4 2 8 4 0 16 11 6 16 chain 99103 chr18 78077248 + 27147444 27148617 L1PA7 6471 + 5302 6470 36999 241 1 0 77 5 1 849 chain 70317 chr18 78077248 + 27169179 27170333 L1PA10 4194 + 176 1287 48256 10 4 0 13 3 0 8 2 0 9 13 9 7 2 0 8 6 5 5 1 0 22 2 0 15 1 0 6 46 20 22 2 0 21 22 18 6 1 0 15 7 0 11 1 0 79 7 5 84 7 20 16 4 5 68 1 2 326 1 7 11 1 0 258 chain 4309 chr18 78077248 + 27221493 27221544 L1MCa 1829 - 397 448 203105 51 chain 4247 chr18 78077248 + 27229105 27229161 MLT1E2 623 + 57 112 203913 8 1 0 47 chain 13556 chr18 78077248 + 27265986 27266136 L1PA5 6144 - 6 156 146150 150 chain 114945 chr18 78077248 + 27281386 27282812 L1PA7 6471 + 5070 6470 32809 542 21 18 495 23 0 188 8 9 144 1 0 4 chain 117096 chr18 78077248 + 27303299 27304688 LTR12C 1709 + 0 1709 32095 309 0 1 4 1 0 478 9 325 107 0 4 481 chain 5294 chr18 78077248 + 27313440 27313594 L1PREC2 3366 - 326 460 192081 30 62 47 11 3 0 30 2 0 16 chain 27359 chr18 78077248 + 27425905 27426212 AluYf4 310 - 3 310 95080 307 chain 269329 chr18 78077248 + 27459845 27463564 MER61-int 3695 - 0 3695 15215 8 0 1 332 1 2 171 10 11 18 2 1 167 1 0 84 1 0 38 11 10 28 0 1 22 3 5 16 2 0 12 1 0 37 4 2 62 0 1 50 2 1 57 2 8 164 13 7 207 13 15 25 0 3 40 8 7 152 0 2 26 0 1 233 2 0 62 0 2 169 0 3 133 26 0 70 0 3 15 0 1 77 0 2 378 0 11 88 5 3 7 1 0 6 1 0 95 4 8 123 15 1 139 1 0 112 8 6 108 1 0 16 4 0 30 chain 9541 chr18 78077248 + 27477991 27478814 LTR12C 1709 - 270 743 162881 49 436 324 42 238 0 58 chain 2292 chr18 78077248 + 27478606 27478630 LTR12C 1709 - 654 678 235481 24 chain 119926 chr18 78077248 + 27480086 27481450 L1PA5 6144 + 4777 6141 31082 320 0 1 778 4 3 262 chain 29240 chr18 78077248 + 27505239 27505586 L1PA7 6471 - 11 357 87843 36 8 7 303 chain 179845 chr18 78077248 + 27528441 27530471 L1PA5 6144 + 4089 6128 21007 191 0 2 1017 0 4 523 0 1 162 0 2 6 1 0 103 0 1 27 chain 28637 chr18 78077248 + 27532401 27532703 AluYk12 309 - 7 309 90570 302 chain 101403 chr18 78077248 + 27539428 27540654 L1PA6 6164 - 2 1241 36420 118 1 5 212 0 1 510 0 4 15 7 11 363 chain 18320 chr18 78077248 + 27555130 27555457 THE1D 372 + 0 327 132023 51 9 0 115 54 62 47 9 10 42 chain 8848 chr18 78077248 + 27601140 27601242 L1PA5 6144 - 12 114 166384 102 chain 510662 chr18 78077248 + 27601827 27607422 L1PA2 6032 - 13 5606 6103 321 0 3 1014 0 1 2601 0 1 820 0 1 388 15 6 333 0 1 103 chain 39538 chr18 78077248 + 27613634 27614154 L1PA8A 6298 - 9 532 69974 20 1 0 10 8 6 67 0 1 25 1 4 59 1 2 161 0 1 167 chain 39820 chr18 78077248 + 27624407 27625022 LTR14B 630 + 10 630 69594 151 1 0 114 19 54 62 68 39 200 chain 34112 chr18 78077248 + 27711764 27712267 LTR19A 502 + 0 502 77466 55 16 4 24 1 0 130 25 24 56 0 12 6 1 2 189 chain 14805 chr18 78077248 + 27712371 27712551 L1PA5 6144 + 5955 6143 141918 28 0 1 4 5 12 143 chain 13891 chr18 78077248 + 27715794 27716089 MER51B 395 - 13 329 144954 73 0 12 31 0 2 19 92 93 37 9 15 34 chain 44038 chr18 78077248 + 27721339 27721876 LTR10F 562 - 0 562 64160 331 3 28 203 chain 31426 chr18 78077248 + 27725130 27725599 MER48 407 + 0 407 81773 132 41 1 24 21 1 47 3 1 201 chain 24676 chr18 78077248 + 27752594 27752905 AluSp 311 - 2 311 106575 291 2 0 18 chain 3459 chr18 78077248 + 27754634 27754722 LTR12C 1709 - 800 851 216011 34 37 0 17 chain 22440 chr18 78077248 + 27768852 27769214 THE1B 368 - 0 367 118295 67 0 2 5 1 0 8 8 10 103 2 1 90 37 42 27 2 0 12 chain 11142 chr18 78077248 + 27770360 27770494 L1PA6 6164 - 2 136 155660 134 chain 14452 chr18 78077248 + 27777835 27778031 L1P3 4156 + 3945 4139 143038 60 0 1 101 2 0 7 2 1 24 chain 120838 chr18 78077248 + 27804540 27805946 L1P1 4361 - 33 1444 30745 23 1 0 120 0 1 36 1 0 644 0 1 307 0 1 71 0 4 203 chain 11479 chr18 78077248 + 27806447 27806592 L1PA5 6144 + 6001 6142 154379 134 4 0 7 chain 7826 chr18 78077248 + 27806780 27806869 THE1B-int 1605 + 1508 1597 172155 89 chain 3898 chr18 78077248 + 27807245 27807311 L1MA5 2750 + 232 297 208879 40 10 9 16 chain 42231 chr18 78077248 + 27824054 27824523 L1PA2 6032 + 5563 6028 66360 458 4 0 7 chain 8499 chr18 78077248 + 27825587 27825690 L1PA7 6471 + 6369 6468 168295 92 4 0 7 chain 19498 chr18 78077248 + 27832443 27832660 L1PA2 6032 - 0 216 128662 20 1 0 196 chain 72570 chr18 78077248 + 27834796 27835797 L1PA8 5853 + 4856 5853 47232 154 2 0 64 13 14 269 0 1 163 1 0 43 1 0 36 10 8 64 23 21 46 6 5 18 1 0 30 0 4 57 chain 82866 chr18 78077248 + 27866229 27867263 L1PA7 6471 + 5434 6464 42391 189 3 0 494 1 0 120 15 15 212 chain 194204 chr18 78077248 + 27875340 27877821 L1PA7 6471 - 10 2490 19656 136 21 23 119 1 0 8 0 1 37 0 1 630 2 0 8 29 1 65 0 1 204 1 0 527 6 8 101 0 8 201 4 14 366 0 6 15 chain 55219 chr18 78077248 + 27877843 27878512 L1PA7 6471 + 3331 4000 55572 198 3 2 304 0 1 164 chain 8768 chr18 78077248 + 27923075 27923250 LTR60 593 + 412 582 166826 19 1 0 38 1 0 23 31 27 28 3 2 20 0 2 11 chain 15668 chr18 78077248 + 27951069 27951343 LTR38B 592 - 314 592 139374 37 11 9 35 9 17 36 3 1 81 18 17 7 0 1 37 chain 25146 chr18 78077248 + 27989043 27989363 LTR76 689 + 369 689 104022 5 0 1 271 6 5 38 chain 44154 chr18 78077248 + 27999344 27999994 LTR12_ 688 + 0 688 64005 54 0 41 153 53 52 9 3 0 264 25 26 89 chain 172875 chr18 78077248 + 28020244 28022474 L1PA8A 6298 - 7 2251 21723 37 19 30 31 2 10 8 8 0 565 3 0 24 0 3 11 0 2 38 0 2 40 0 3 645 21 17 124 0 1 4 4 3 646 chain 17014 chr18 78077248 + 28038749 28038952 L1PA5 6144 - 0 203 135554 203 chain 8217 chr18 78077248 + 28038952 28039044 L1PA5 6144 + 5848 5940 169843 92 chain 49477 chr18 78077248 + 28095949 28096516 L1PA5 6144 + 5575 6142 59405 37 1 0 177 0 2 21 0 1 322 2 0 7 chain 4283 chr18 78077248 + 28167509 28167881 L1MB3 1562 - 87 423 203439 6 0 1 17 72 41 39 217 211 21 chain 96508 chr18 78077248 + 28183627 28184861 L1PA7 6471 - 5 1211 37687 7 6 0 835 0 3 136 47 22 203 chain 10749 chr18 78077248 + 28215243 28215994 LTR60 593 + 0 578 157204 37 5 6 47 569 396 61 6 5 26 chain 14984 chr18 78077248 + 28228143 28228316 AluY 311 + 28 202 141370 104 0 1 69 chain 54228 chr18 78077248 + 28243775 28244623 L1PA11 4918 + 3753 4578 56208 232 3 4 6 1 0 264 13 14 55 1 0 60 8 7 12 2 0 34 1 0 34 8 6 7 1 0 14 50 37 15 1 0 13 2 0 11 chain 11813 chr18 78077248 + 28257780 28257936 THE1D 372 + 0 159 152972 122 6 10 23 1 0 4 chain 7693 chr18 78077248 + 28269824 28270101 MLT1C 463 - 200 463 172973 26 167 153 84 chain 447977 chr18 78077248 + 28310711 28317023 L1PA8A 6298 + 34 6290 8814 6 1 0 16 1 0 5 27 16 21 13 10 11 18 11 12 7 6 9 2 1 10 12 10 9 2 0 17 22 18 7 1 0 6 1 0 7 1 0 17 5 0 7 2 0 42 1 0 22 2 0 5 2 0 5 1 0 49 51 46 69 7 6 90 0 1 204 4 0 145 0 3 182 0 1 4 3 4 58 0 2 10 6 10 58 13 14 4 1 0 200 3 0 415 9 0 6 36 48 48 7 8 7 0 1 323 1 0 32 0 2 62 0 1 48 1 2 44 1 2 550 6 4 101 20 0 168 21 20 118 0 1 27 9 14 153 1 2 79 0 1 89 1 2 212 0 1 116 0 4 65 6 1 80 0 1 40 17 14 4 0 1 259 1 3 139 3 9 287 0 1 251 0 1 122 2 1 7 0 1 172 15 18 249 4 5 58 1 0 28 1 0 4 0 1 36 19 4 72 6 7 31 2 0 5 1 4 98 chain 33240 chr18 78077248 + 28346173 28346595 MER57A1 433 - 0 432 78815 13 0 1 141 0 1 173 1 9 94 chain 30431 chr18 78077248 + 28348339 28348795 MER4D1 891 + 0 456 83575 12 0 1 15 39 40 88 1 2 13 1 0 245 1 0 13 1 0 27 chain 166539 chr18 78077248 + 28351066 28353584 MER41-int 2638 + 112 2636 22455 43 1 0 4 0 1 7 26 16 12 29 40 13 35 31 12 4 0 160 1 0 8 1 0 25 7 11 38 0 1 17 0 1 85 31 20 69 1 3 69 10 25 402 2 11 49 1 6 6 0 1 25 0 1 51 0 5 153 20 0 55 1 0 55 0 1 77 1 2 152 2 0 34 1 2 256 0 1 4 1 0 205 0 1 67 72 73 118 chain 4773 chr18 78077248 + 28354144 28354200 MER4E1 777 + 713 769 197663 56 chain 73845 chr18 78077248 + 28359385 28360238 L1PA5 6144 - 0 853 46591 140 7 0 7 12 19 687 chain 120769 chr18 78077248 + 28368227 28369675 LTR12C 1709 + 0 1709 30772 570 10 9 120 0 159 253 1 0 6 2 0 107 0 4 168 0 102 211 chain 92584 chr18 78077248 + 28395446 28396515 MER11C 1089 + 0 1073 38792 249 0 1 63 0 4 256 2 1 18 0 1 83 1 0 397 chain 117344 chr18 78077248 + 28418301 28419688 LTR12C 1709 - 0 1709 32012 313 0 1 167 0 4 107 9 325 531 0 1 260 chain 439604 chr18 78077248 + 28424271 28430073 L1PA8 5853 - 0 5803 9063 91 3 2 7 0 17 57 1 0 71 2 0 39 6 5 43 0 1 280 0 32 122 0 2 54 3 2 4 0 1 16 6 3 280 8 0 143 1 2 85 4 0 278 0 1 157 0 4 922 10 14 126 0 1 8 0 1 4 6 5 66 20 19 14 1 2 210 6 5 195 0 6 181 0 4 121 2 0 110 3 0 14 15 0 664 0 3 54 8 11 67 0 1 51 8 9 21 1 0 409 2 1 25 11 4 12 0 7 134 0 1 243 0 4 192 64 25 6 1 0 9 3 1 22 chain 20325 chr18 78077248 + 28434063 28434322 AluY 311 + 49 310 126161 76 1 2 109 0 1 73 chain 4914 chr18 78077248 + 28446207 28446297 L1MC1 2226 - 181 266 196121 41 10 8 16 3 0 20 chain 38987 chr18 78077248 + 28447115 28447638 L1PA8 5853 - 0 516 70755 93 1 0 18 3 2 39 25 23 70 7 5 39 1 0 227 chain 23539 chr18 78077248 + 28461171 28461477 AluSc8 310 + 6 307 112913 249 6 1 51 chain 22968 chr18 78077248 + 28478577 28478836 L1PA4 6152 + 5884 6143 115763 259 chain 54206 chr18 78077248 + 28489102 28489696 L1PA4 6152 + 5537 6136 56227 458 0 6 98 1 0 37 chain 27770 chr18 78077248 + 28503135 28503431 AluYf4 310 + 0 296 93800 296 chain 2668 chr18 78077248 + 28514690 28514721 L1MB7 1623 - 138 169 230799 31 chain 4782 chr18 78077248 + 28544787 28544841 MER5A1 166 + 41 95 197554 54 chain 35789 chr18 78077248 + 28558138 28558559 L1PA5 6144 + 5720 6142 75150 269 4 8 138 3 0 7 chain 21524 chr18 78077248 + 28563778 28564007 AluYb8 318 + 81 310 122062 229 chain 3891 chr18 78077248 + 28576121 28576232 L1MA7 2200 + 2061 2156 208995 22 10 3 11 19 13 4 1 0 6 2 0 36 chain 28729 chr18 78077248 + 28739010 28739315 AluYb8 318 - 13 318 90214 305 chain 19194 chr18 78077248 + 28794737 28794965 THE1A-int 1579 - 6 235 129544 203 3 4 22 chain 4806 chr18 78077248 + 28798716 28798781 MER41B 635 + 481 547 197299 28 1 2 36 chain 182089 chr18 78077248 + 28798893 28801795 L1PBa 3878 + 1161 3738 20773 282 0 1 8 2 0 73 3 0 52 72 71 60 0 1 34 8 7 74 0 2 5 14 12 71 1 0 664 308 0 22 13 7 56 8 2 41 0 2 30 7 8 11 5 4 39 0 2 253 1 2 50 0 3 110 6 0 7 0 1 144 6 5 338 2 1 22 chain 60555 chr18 78077248 + 28818723 28819493 L1PA8 5853 - 0 752 52538 93 1 0 16 1 0 51 27 15 68 2 0 48 1 0 370 2 1 90 chain 9259 chr18 78077248 + 28839981 28840263 L1PB1 5432 - 2 257 164265 4 1 0 10 1 0 12 1 0 7 10 9 15 15 14 8 3 0 4 2 0 15 13 10 11 29 18 13 2 1 43 1 0 13 7 6 42 chain 34335 chr18 78077248 + 28850563 28850995 MER57A1 433 - 0 432 77157 432 chain 24955 chr18 78077248 + 28863731 28864127 L1PA11 4918 - 411 801 105032 19 1 0 14 2 0 67 2 0 12 1 0 48 19 16 77 10 9 18 5 9 101 chain 27946 chr18 78077248 + 28864169 28864563 LTR7 482 - 8 482 93181 168 0 1 9 2 33 35 3 4 74 1 51 40 11 8 51 chain 201980 chr18 78077248 + 28866392 28869487 HERVH-int 3825 - 0 3825 19065 329 0 2 25 3 715 336 6 5 4 0 1 306 11 16 243 77 62 65 4 31 70 1 0 5 0 1 39 8 3 136 9 0 189 21 6 136 0 2 313 149 275 25 190 89 52 26 25 80 0 2 237 chain 25190 chr18 78077248 + 28876383 28876657 AluYa5 310 - 2 272 103798 176 4 0 94 chain 57103 chr18 78077248 + 28878018 28878813 L1PA8 5853 + 5060 5847 54466 473 6 5 26 1 0 44 2 0 70 13 11 39 35 33 86 chain 7177 chr18 78077248 + 28889240 28889342 L1PA8 5853 - 6 112 176225 40 5 10 37 1 0 19 chain 37191 chr18 78077248 + 28890968 28891386 L1PA7 6471 - 274 692 73244 418 chain 4581 chr18 78077248 + 28896051 28896101 MER3 215 - 5 55 199849 50 chain 554849 chr18 78077248 + 28927931 28933959 L1PA2 6032 - 1 6031 840 851 0 4 633 1 0 4287 1 0 255 chain 24838 chr18 78077248 + 28941478 28941835 THE1D 372 - 0 368 105683 32 1 0 147 28 30 80 1 11 68 chain 5372 chr18 78077248 + 28952198 28952261 MLT1D 503 + 405 468 191285 63 chain 8851 chr18 78077248 + 28962279 28962391 HY1 111 + 0 111 166368 85 1 0 26 chain 37807 chr18 78077248 + 29014327 29014759 L1PA5 6144 - 4 436 72403 432 chain 12094 chr18 78077248 + 29020689 29020851 MER30 238 + 47 237 151820 57 1 29 104 chain 29315 chr18 78077248 + 29056640 29056950 AluYb8 318 + 0 310 87464 310 chain 20858 chr18 78077248 + 29069669 29070032 THE1B 368 - 2 368 124434 117 20 25 11 46 44 52 5 6 88 1 0 23 chain 41159 chr18 78077248 + 29072622 29073290 LTR66 600 + 0 600 67699 199 0 1 193 88 12 56 1 17 10 16 0 52 21 28 32 chain 35732 chr18 78077248 + 29073543 29074521 HERVL66-int 1251 + 155 910 75220 7 7 0 19 97 73 35 30 12 16 89 57 59 0 1 62 1 0 52 23 12 17 20 17 46 6 5 33 1 0 77 2 0 57 7 0 17 20 0 47 111 14 20 chain 39732 chr18 78077248 + 29076430 29076993 LTR66 600 + 0 600 69707 136 0 4 166 2 0 5 16 19 72 7 5 11 0 1 38 0 33 110 chain 103787 chr18 78077248 + 29086893 29088132 L1PA7 6471 - 2 1242 35776 152 9 10 61 1 0 546 0 2 52 26 25 392 chain 36333 chr18 78077248 + 29119684 29120217 MER1A 529 + 1 529 74460 161 66 65 231 17 13 58 chain 3375 chr18 78077248 + 29125417 29125462 L1MC4 1079 - 201 246 217573 45 chain 15550 chr18 78077248 + 29134879 29135077 LTR26E 604 + 28 225 139734 188 1 0 9 chain 9604 chr18 78077248 + 29138107 29138301 L1PB4 2604 + 2322 2495 162579 28 64 40 5 0 3 97 chain 12283 chr18 78077248 + 29184698 29184874 L1PB1 5432 + 4930 5116 151068 44 4 0 85 5 6 27 0 13 11 chain 29007 chr18 78077248 + 29196215 29196652 L1PA8 5853 - 3 444 88952 89 2 1 19 2 1 33 16 9 10 2 1 8 2 1 54 3 16 42 0 2 155 chain 71211 chr18 78077248 + 29250720 29251628 L1PA7 6471 - 1 928 47842 55 0 4 96 1 0 6 0 1 71 8 12 12 8 7 86 0 2 493 0 6 15 1 5 56 chain 23608 chr18 78077248 + 29270775 29271115 L1PA8 5853 + 5509 5853 112532 55 1 0 45 2 0 13 0 1 22 0 8 28 1 0 7 3 1 50 3 2 19 1 0 34 10 0 8 0 13 38 chain 8189 chr18 78077248 + 29298155 29298284 MER20 218 + 24 157 170014 56 24 28 49 chain 19840 chr18 78077248 + 29298855 29299097 7SK 245 + 0 242 127680 242 chain 14806 chr18 78077248 + 29301133 29301304 L1PA6 6164 + 5989 6160 141917 171 chain 41009 chr18 78077248 + 29318812 29319347 LTR10A 586 + 0 565 67889 67 7 8 147 14 4 12 0 39 288 chain 97859 chr18 78077248 + 29327881 29329246 L1PREC2 3366 - 1183 2573 37313 143 0 16 25 1 2 231 1 4 55 1 0 10 2 5 307 0 1 44 3 6 24 8 11 256 0 2 74 19 18 5 1 0 5 0 1 89 14 9 47 chain 2956 chr18 78077248 + 29346114 29346145 MIR 256 + 74 105 225943 31 chain 47710 chr18 78077248 + 29355522 29356104 LTR10C 591 + 4 591 60685 427 0 2 75 0 2 42 1 2 37 chain 4410 chr18 78077248 + 29358809 29358921 MLT1E1A 663 + 565 663 201810 34 25 24 15 13 0 25 chain 3487 chr18 78077248 + 29378999 29379215 MLT2A1 477 + 0 221 88788 142 12 13 14 1 5 47 chain 71280 chr18 78077248 + 29379228 29380400 HERVL-int 5654 + 2959 3812 47812 29 10 9 336 319 0 422 3 4 53 chain 5321 chr18 78077248 + 29380400 29380462 MLT2A1 477 + 80 142 191820 62 chain 4177 chr18 78077248 + 29380462 29380523 MLT2A1 477 + 143 208 204887 24 3 7 34 chain 4214 chr18 78077248 + 29380537 29380798 MLT2A1 477 + 221 477 88788 18 3 7 74 2 0 65 4 0 6 28 26 39 2 1 20 chain 30506 chr18 78077248 + 29383745 29384145 LTR7 482 + 0 482 83413 67 10 48 109 0 1 39 0 31 19 0 10 41 0 2 115 chain 284301 chr18 78077248 + 29384147 29387803 HERVH-int 3825 + 0 3825 14397 212 0 11 307 1 0 11 1 0 4 0 1 24 1 0 10 1 0 12 22 12 15 1 0 12 3 0 14 14 11 27 2 0 8 7 6 23 20 0 9 2 1 49 0 1 4 2 0 237 2 1 209 15 0 200 9 0 20 1 3 16 1 0 211 0 5 93 0 1 200 0 1 42 0 3 66 4 9 754 0 1 159 1 0 55 9 11 37 10 220 487 chain 28267 chr18 78077248 + 29389618 29390003 LTR7 482 + 0 466 92055 67 10 48 109 0 1 24 1 0 17 0 31 17 0 10 62 0 2 78 chain 76416 chr18 78077248 + 29390463 29391445 LTR5_Hs 974 + 0 974 45254 458 0 4 164 10 9 24 0 1 14 5 7 95 7 7 47 15 1 143 chain 117521 chr18 78077248 + 29392232 29393573 L1PA5 6144 + 4799 6138 31959 206 0 1 126 1 0 518 0 1 154 1 0 273 2 0 60 chain 33598 chr18 78077248 + 29395947 29396360 L1PA7 6471 + 6059 6469 78241 244 19 13 122 0 1 17 0 2 11 chain 12453 chr18 78077248 + 29406131 29406280 L1PA6 6164 + 6014 6162 150448 133 1 0 15 chain 26617 chr18 78077248 + 29408328 29408624 AluYk4 311 - 16 311 97611 121 1 0 174 chain 23446 chr18 78077248 + 29439715 29439994 AluSg 306 + 11 296 113397 35 1 7 243 chain 25686 chr18 78077248 + 29457293 29457593 AluYf4 310 + 0 300 101353 135 0 1 5 2 1 158 chain 47178 chr18 78077248 + 29467091 29468038 L1PA10 4194 + 3216 3811 61064 224 312 0 79 42 2 290 chain 4910 chr18 78077248 + 29517496 29517552 U6 107 + 1 57 196153 56 chain 3911 chr18 78077248 + 29520451 29520499 MER33 330 + 226 276 208690 42 0 2 6 chain 2613 chr18 78077248 + 29528121 29528298 MER4E1 777 - 0 199 80646 71 0 21 34 2 3 70 chain 34655 chr18 78077248 + 29528298 29528748 LTR2 463 + 0 463 76682 55 0 3 36 0 12 6 20 18 333 chain 4031 chr18 78077248 + 29530024 29530297 MER4E1 777 - 504 777 80646 273 chain 4072 chr18 78077248 + 29531277 29531325 LTR29 598 + 510 558 206293 48 chain 55424 chr18 78077248 + 29531416 29532376 MER4E1 777 + 0 769 55451 25 2 0 18 0 4 8 0 1 207 222 0 67 2 21 85 0 1 105 1 8 98 5 6 115 chain 31862 chr18 78077248 + 29534709 29535162 LTR7B 505 + 0 496 81076 105 0 10 60 15 22 28 3 27 26 0 2 42 0 1 42 1 0 21 0 1 54 2 1 54 chain 20884 chr18 78077248 + 29537621 29537950 LTR26E 604 - 333 604 124342 60 58 0 211 chain 173709 chr18 78077248 + 29539455 29541617 SVA_D 2077 + 0 2077 21623 23 3 0 739 40 0 150 0 86 38 0 2 54 0 1 115 17 17 163 0 1 4 15 14 17 128 0 342 1 0 304 2 0 7 chain 7152 chr18 78077248 + 29540833 29540959 SVA_D 2077 + 1248 1374 76887 126 chain 24322 chr18 78077248 + 29575160 29575442 AluSp 311 + 10 292 108536 282 chain 31661 chr18 78077248 + 29580445 29580899 LTR7B 505 + 0 495 81387 108 0 10 57 0 38 12 35 28 27 0 2 83 1 0 74 16 15 41 chain 49623 chr18 78077248 + 29583812 29584452 HERVH-int 3825 + 3186 3825 59300 57 18 17 565 chain 18156 chr18 78077248 + 29585897 29586187 LTR7B 505 + 0 365 132447 108 0 10 66 35 11 17 0 88 20 1 2 43 chain 3276 chr18 78077248 + 29586193 29586234 LTR7B 505 + 454 495 219422 41 chain 10781 chr18 78077248 + 29589013 29589158 L1PA8 5853 - 0 143 157068 93 1 0 19 2 1 30 chain 8935 chr18 78077248 + 29610532 29610643 MER4D1 891 + 0 111 165951 111 chain 29376 chr18 78077248 + 29621583 29621892 AluYa5 310 - 1 310 87182 309 chain 6945 chr18 78077248 + 29638155 29638316 L1MA3 4352 - 0 148 177857 14 9 6 4 1 0 14 13 12 14 8 6 24 2 0 23 4 0 31 chain 3250 chr18 78077248 + 29646682 29646723 MIRb 242 + 164 205 219998 41 chain 5133 chr18 78077248 + 29716224 29716293 Charlie1 1172 - 329 397 193757 29 1 0 39 chain 100241 chr18 78077248 + 29719645 29720915 LTR12C 1709 + 0 1709 36712 338 0 43 224 1 0 5 0 2 155 0 237 12 0 2 53 0 47 106 0 4 180 0 4 51 38 9 4 1 0 39 0 131 63 chain 3290 chr18 78077248 + 29726498 29726657 MER5A 189 + 28 189 219171 37 107 109 15 chain 20442 chr18 78077248 + 29734928 29735313 MER6 865 + 459 865 125778 11 8 11 27 13 14 34 1 4 10 11 8 30 6 10 126 5 4 46 2 12 33 9 13 13 chain 95915 chr18 78077248 + 29748925 29750011 L1PA5 6144 + 5065 6144 37842 454 6 0 512 1 0 113 chain 2811 chr18 78077248 + 29750473 29750503 LTR47A 437 - 87 117 228613 30 chain 529686 chr18 78077248 + 29808049 29813897 L1PA3long 6157 - 8 6147 4222 2076 0 159 914 0 1 1757 1 0 77 8 11 250 9 137 611 4 5 141 chain 56091 chr18 78077248 + 29832536 29833246 THE1A-int 1579 - 866 1579 55073 55 1 3 4 0 1 650 chain 13781 chr18 78077248 + 29833246 29833407 THE1A 353 - 0 161 145329 161 chain 24498 chr18 78077248 + 29855649 29855928 AluSp 311 - 20 302 107550 197 0 3 82 chain 34565 chr18 78077248 + 29859251 29859745 MER1A 529 + 63 526 76801 13 14 10 144 23 0 221 1 0 10 7 4 61 chain 38766 chr18 78077248 + 29861738 29862177 LTR7 482 + 0 482 71059 264 0 31 10 0 1 7 0 11 158 chain 70138 chr18 78077248 + 29871463 29872319 L1PA7 6471 - 2 866 48332 14 0 5 119 4 1 49 0 3 24 0 1 541 3 2 93 0 3 9 chain 53449 chr18 78077248 + 29920946 29921566 L1PA5 6144 - 1 623 56724 10 1 3 609 chain 495900 chr18 78077248 + 29975678 29981297 L1PA5 6144 + 532 6142 7077 6 1 0 602 0 7 734 0 4 626 1 0 56 1 4 28 13 0 577 1 0 8 1 0 519 0 1 67 4 0 271 1 0 1762 2 1 190 1 0 147 chain 145570 chr18 78077248 + 29995393 29997525 L1MA2 4263 + 1976 4092 25242 32 1 0 172 3 4 45 1 0 48 0 1 199 6 8 14 2 0 142 20 20 36 5 0 58 0 1 20 1 2 129 1 3 62 0 1 7 0 1 33 6 0 330 9 13 71 12 11 31 0 2 95 1 0 17 5 1 77 1 0 84 0 2 19 11 11 31 7 4 124 30 28 79 21 14 34 chain 24780 chr18 78077248 + 30001958 30002253 L1PA4 6152 - 12 300 105995 11 7 0 277 chain 400894 chr18 78077248 + 30075166 30081086 L1PB1 5432 - 151 5413 10059 37 8 7 16 2 1 12 1 0 41 2 0 5 9 5 10 1 0 13 1 0 17 62 14 116 0 3 170 1 0 10 1 0 185 3 0 138 4 0 47 1 2 204 1 3 20 0 6 985 0 2 117 14 15 146 0 4 35 1 4 49 2 1 346 9 0 140 0 1 91 320 12 327 0 1 57 0 1 183 0 1 79 0 6 34 0 2 108 17 17 38 11 0 211 1 2 101 14 6 54 313 0 79 2 0 203 0 1 129 1 3 6 2 0 18 0 1 274 6 9 226 5 27 28 chain 2637 chr18 78077248 + 30102461 30102509 L1MC3 1789 - 800 850 231192 27 5 7 16 chain 4233 chr18 78077248 + 30106129 30106184 MADE1 96 - 0 96 204126 24 0 41 31 chain 26408 chr18 78077248 + 30113170 30113559 LTR7 482 - 7 482 98379 91 0 2 75 3 4 11 22 41 28 1 12 64 0 53 94 chain 12128 chr18 78077248 + 30136217 30136504 MSTA 426 + 14 342 151698 42 1 0 52 16 40 45 74 71 27 7 28 23 chain 28967 chr18 78077248 + 30149252 30149670 LTR7B 505 + 0 495 89146 90 0 3 14 0 11 57 15 77 26 0 2 40 1 2 43 2 1 30 0 1 44 2 1 21 1 0 32 chain 14988 chr18 78077248 + 30179636 30180015 L1PB1 5432 + 5085 5426 141359 7 0 11 11 22 0 24 1 0 6 1 0 12 2 0 3 2 0 9 3 1 53 11 14 41 4 3 16 3 0 10 16 7 13 3 1 5 1 0 9 7 5 24 1 0 23 1 0 11 1 0 18 1 0 4 chain 22954 chr18 78077248 + 30180304 30180589 AluSc8 310 + 10 297 115834 105 1 0 11 0 3 168 chain 54059 chr18 78077248 + 30182151 30182931 L1MA3 4352 - 1310 2092 56321 300 19 19 31 0 1 215 45 47 116 1 0 53 chain 22023 chr18 78077248 + 30185623 30185857 L1HS 6032 - 3 237 120123 234 chain 26166 chr18 78077248 + 30194726 30195033 L1PA8A 6298 - 12 319 99342 307 chain 26941 chr18 78077248 + 30200534 30200917 THE1C 375 + 0 375 96479 107 1 2 70 35 27 144 1 0 25 chain 17438 chr18 78077248 + 30209382 30209614 LTR18B 584 + 0 229 134415 200 5 0 7 2 4 18 chain 26639 chr18 78077248 + 30217776 30218132 THE1B 368 + 0 368 97514 44 1 16 106 8 6 121 1 0 75 chain 37984 chr18 78077248 + 30218357 30218769 L1PA3long 6157 - 115 527 72156 412 chain 10852 chr18 78077248 + 30218769 30218884 L1PA3long 6157 + 6035 6150 156774 115 chain 28177 chr18 78077248 + 30221388 30221696 L1PA3long 6157 + 5849 6157 92383 308 chain 223311 chr18 78077248 + 30228740 30232343 L1MA2 4263 - 205 3511 17696 93 3 2 5 1 0 16 1 4 29 11 13 31 1 0 56 3 0 147 1 0 13 5 6 58 17 11 26 0 3 572 12 18 39 4 7 141 0 1 41 38 40 282 0 1 151 16 7 7 0 6 112 3 7 150 10 4 107 10 9 46 1 0 8 8 0 19 19 21 143 17 18 46 4 0 9 308 14 32 1 0 25 1 0 48 14 15 39 0 1 5 10 9 235 1 4 147 8 9 147 0 1 50 chain 12092 chr18 78077248 + 30234357 30234490 L1PA5 6144 - 12 145 151828 133 chain 282535 chr18 78077248 + 30237866 30241316 L1PA7 6471 + 3015 6469 14501 560 1 4 435 7 1 559 0 1 374 1 0 15 1 2 18 0 1 88 1 0 278 7 10 29 0 2 32 1 2 195 1 0 419 1 3 38 1 0 194 11 13 173 2 0 8 chain 22674 chr18 78077248 + 30373033 30373296 AluSp 311 + 10 276 117194 73 0 2 50 0 1 140 chain 61908 chr18 78077248 + 30374355 30375065 LTR12C 1709 + 0 1709 51939 296 0 1 276 1 2 78 0 997 59 chain 23926 chr18 78077248 + 30375830 30376152 L1P3 4156 + 3814 4136 110768 18 0 1 155 0 1 9 1 2 107 2 0 7 2 1 21 chain 9538 chr18 78077248 + 30397293 30397432 MER2 342 + 71 215 162892 7 0 4 16 4 5 5 0 1 8 1 0 98 chain 12570 chr18 78077248 + 30415645 30415805 THE1D 372 - 212 372 149965 160 chain 558071 chr18 78077248 + 30436615 30442647 L1PA2 6032 - 0 6032 495 1425 0 1 3835 1 0 771 chain 28547 chr18 78077248 + 30455230 30455596 THE1C 375 - 11 375 90980 15 1 0 154 10 9 186 chain 14221 chr18 78077248 + 30501281 30501642 MER44B 551 - 1 377 143815 95 2 0 71 158 175 35 chain 81197 chr18 78077248 + 30531611 30532730 THE1C-int 1605 - 14 1126 43088 422 1 0 149 15 17 93 4 7 152 52 40 20 9 10 202 chain 120169 chr18 78077248 + 30550983 30552540 L1PA8 5853 - 0 1553 31001 93 1 0 19 2 1 51 1 0 10 1 0 69 3 1 45 1 0 476 5 6 56 15 17 229 0 1 33 21 21 391 1 0 34 chain 27980 chr18 78077248 + 30560265 30560557 AluYd8 298 + 0 292 93071 292 chain 21818 chr18 78077248 + 30595261 30595527 AluY 311 + 15 281 120952 41 1 0 73 3 4 148 chain 9254 chr18 78077248 + 30662584 30662693 L1PA5 6144 + 6029 6138 164290 109 chain 17862 chr18 78077248 + 30697492 30697696 L1PA5 6144 + 5942 6144 133208 59 2 0 143 chain 150337 chr18 78077248 + 30698458 30700150 L1PA5 6144 + 4431 6135 24559 16 0 3 245 0 2 121 0 3 470 0 4 840 chain 116720 chr18 78077248 + 30719238 30720777 THE1B-int 1605 + 0 1587 32219 48 0 1 381 1 26 40 9 13 117 7 19 771 3 7 62 28 30 72 chain 93046 chr18 78077248 + 30727332 30728426 SVA_B 1603 - 0 1602 38644 454 0 2 137 0 1 33 1 0 14 0 38 17 0 470 241 5 4 145 12 5 18 0 6 17 chain 11822 chr18 78077248 + 30730600 30730809 L1PB2 3958 + 3557 3771 152935 60 1 0 32 31 39 6 2 0 34 0 3 23 5 2 15 chain 30653 chr18 78077248 + 30741672 30742007 L1PA4 6152 - 289 624 83113 335 chain 26021 chr18 78077248 + 30742007 30742296 L1PA4 6152 + 5852 6141 99938 289 chain 28466 chr18 78077248 + 30747033 30747546 L1PA15 4387 - 21 528 91319 11 1 0 26 5 0 9 1 0 5 3 1 44 6 3 50 1 0 9 4 0 22 10 21 35 1 0 12 0 4 9 2 1 88 24 26 58 1 0 19 1 0 23 2 0 31 chain 22441 chr18 78077248 + 30756996 30757325 L1PA8 5853 + 5521 5853 118289 43 1 0 45 2 0 73 22 19 32 10 9 9 0 10 92 chain 11849 chr18 78077248 + 30767092 30767265 THE1D 372 - 195 370 152830 11 5 6 72 11 12 74 chain 80579 chr18 78077248 + 30798193 30799132 L1PA5 6144 - 777 1717 43355 875 1 2 63 chain 66746 chr18 78077248 + 30799132 30799887 L1PA5 6144 + 5376 6135 49570 434 0 1 271 0 3 50 chain 4259 chr18 78077248 + 30811938 30811986 MER58B 340 - 9 57 203757 48 chain 155391 chr18 78077248 + 30828238 30830028 L1PA5 6144 - 0 1797 23939 152 7 11 36 1 2 92 0 1 1475 0 1 27 chain 14089 chr18 78077248 + 30846547 30846699 L1PA4 6152 + 5933 6085 144261 152 chain 209080 chr18 78077248 + 30858743 30861074 L1PA3long 6157 + 3818 6155 18564 127 1 2 511 0 3 293 0 1 1251 3 4 145 chain 7011 chr18 78077248 + 30872888 30873002 MLT1E3 631 + 519 631 177390 12 1 0 13 12 11 76 chain 29051 chr18 78077248 + 30893882 30894193 AluYa5 310 + 0 310 88757 132 1 0 178 chain 103485 chr18 78077248 + 30896009 30897473 LTR12C 1709 + 0 1709 35870 242 46 54 40 0 43 81 23 11 62 24 56 130 0 118 119 0 41 74 0 47 97 47 16 394 1 0 84 chain 10298 chr18 78077248 + 30897474 30897602 MER41C 542 + 415 542 159145 16 1 0 111 chain 76536 chr18 78077248 + 30899012 30899884 L1PA5 6144 - 5 884 45153 653 0 3 188 0 4 31 chain 128005 chr18 78077248 + 30899884 30901340 L1PA5 6144 + 3810 5269 28565 69 2 1 558 0 1 52 0 4 133 1 0 475 1 2 54 1 0 110 chain 7302 chr18 78077248 + 30905833 30905935 L1MB5 1630 - 22 122 175426 7 1 0 49 1 0 44 chain 51376 chr18 78077248 + 30916755 30917478 L1PB1 5432 - 1350 2064 58043 84 8 6 30 1 0 203 0 4 17 1 2 42 5 9 59 15 1 59 1 0 198 chain 123555 chr18 78077248 + 30919887 30921444 THE1A-int 1579 + 0 1571 29857 15 0 2 8 2 3 342 2 3 67 0 2 151 0 1 286 0 3 113 0 1 95 9 10 204 0 1 204 0 1 59 chain 29890 chr18 78077248 + 30923986 30924298 AluYb8 318 + 0 312 85130 312 chain 4019 chr18 78077248 + 30928451 30928581 MER3 215 - 74 206 207083 45 65 67 20 chain 272969 chr18 78077248 + 30963378 30967381 L1PA10 4194 + 175 4143 15019 13 2 0 5 1 0 4 2 0 9 2 0 10 11 7 9 2 0 9 1 0 6 6 5 17 5 3 14 73 63 4 1 0 10 14 9 7 1 0 6 3 0 9 4 0 9 1 0 16 0 1 51 2 30 8 30 0 588 0 2 9 4 3 275 0 1 5 9 8 137 1 0 215 2 1 351 6 7 7 0 3 354 0 6 167 1 2 11 1 0 14 24 29 8 0 2 11 13 15 132 10 4 88 1 0 145 0 10 11 40 12 39 0 1 88 0 5 120 6 8 201 0 1 241 16 25 228 21 18 26 chain 25243 chr18 78077248 + 30968483 30968747 AluYa5 310 - 11 275 103515 264 chain 118222 chr18 78077248 + 30994328 30995658 L1PA5 6144 + 4797 6131 31721 1202 0 4 128 chain 28641 chr18 78077248 + 31040188 31040564 THE1C 375 + 0 375 90556 183 1 2 5 1 0 160 1 0 25 chain 10609 chr18 78077248 + 31055450 31055570 L1PA5 6144 + 6023 6143 157778 120 chain 73685 chr18 78077248 + 31119015 31119842 L1PA4 6152 - 0 833 46689 104 1 0 35 0 7 687 chain 27864 chr18 78077248 + 31143926 31144230 AluYa5 310 + 0 310 93478 76 0 6 228 chain 3538 chr18 78077248 + 31201389 31201431 MADE1 96 - 54 96 214742 42 chain 39467 chr18 78077248 + 31346943 31347386 L1PA3long 6157 - 0 443 70059 443 chain 78317 chr18 78077248 + 31347386 31348253 L1PA3long 6157 + 4886 5752 44368 637 2 1 228 chain 152486 chr18 78077248 + 31352123 31353836 L1PA4 6152 - 1362 3074 24285 609 0 1 245 0 3 148 4 0 619 1 0 87 chain 118599 chr18 78077248 + 31353836 31355173 L1PA4 6152 + 4802 6142 31540 231 0 1 266 0 1 376 0 1 464 chain 32803 chr18 78077248 + 31365399 31366827 L1PA4 6152 + 3748 5178 19475 192 0 1 832 0 1 404 chain 554431 chr18 78077248 + 31366844 31372992 L1PA3long 6157 + 0 6157 892 1867 0 1 2023 0 1 1034 1 0 110 0 9 648 1 0 464 chain 21685 chr18 78077248 + 31373003 31373947 L1PA4 6152 + 5178 6137 19475 126 0 4 49 0 3 215 1 0 512 4 13 37 chain 13937 chr18 78077248 + 31381775 31382048 THE1B 368 - 94 361 144799 31 2 1 12 73 67 49 5 6 101 chain 14744 chr18 78077248 + 31391367 31391529 L1PA4 6152 + 5817 5979 142120 162 chain 15498 chr18 78077248 + 31391532 31391704 L1PA4 6152 + 5979 6151 139905 172 chain 78716 chr18 78077248 + 31399174 31400752 LTR12D 1347 - 0 1347 44180 147 0 200 80 1 0 87 0 1 126 38 7 27 119 0 35 41 0 69 2 33 95 1 0 107 0 37 72 311 3 13 0 2 93 2 1 112 chain 2156 chr18 78077248 + 31399615 31399639 LTR12D 1347 - 617 641 182911 24 chain 1765 chr18 78077248 + 31399834 31399875 LTR12D 1347 - 819 860 155469 41 chain 6064 chr18 78077248 + 31412261 31412357 L1MCa 1829 - 1171 1265 184709 49 13 11 34 chain 10884 chr18 78077248 + 31440245 31440392 THE1D-int 1627 - 11 151 156644 6 7 0 134 chain 96099 chr18 78077248 + 31440450 31441513 L1PA3long 6157 - 1853 2916 37794 1063 chain 167679 chr18 78077248 + 31441520 31443394 L1PA3long 6157 + 4282 6157 22316 1848 0 1 26 chain 39469 chr18 78077248 + 31461040 31461461 L1PA3long 6157 - 1711 2132 69816 421 chain 153945 chr18 78077248 + 31461461 31463178 L1PA3long 6157 + 4438 6157 24095 1565 7 0 7 1 8 132 0 2 5 chain 14128 chr18 78077248 + 31465242 31465475 L1MA1 4479 + 3965 4188 144113 64 1 2 47 1 0 29 2 0 32 4 3 30 7 0 16 chain 119451 chr18 78077248 + 31467389 31468857 L1PA6 6164 - 2 1473 31205 151 0 1 595 4 0 22 1 3 71 1 5 407 1 0 4 8 9 203 chain 136249 chr18 78077248 + 31468857 31470510 L1PA6 6164 + 3024 4678 26790 90 0 1 418 17 0 17 6 6 470 2 3 281 0 1 44 5 17 279 0 3 24 chain 3158 chr18 78077248 + 31512109 31512148 MER20B 722 + 528 567 221768 39 chain 69339 chr18 78077248 + 31519852 31520653 L1PA7 6471 + 5646 6455 48664 411 0 2 165 0 1 59 0 1 129 0 4 37 chain 22908 chr18 78077248 + 31547772 31548052 AluSx4 309 + 2 283 116075 41 0 1 239 chain 8643 chr18 78077248 + 31563020 31563298 L1MC1 2226 + 1930 2189 167522 41 0 1 8 3 0 13 2 0 16 1 0 38 95 84 7 1 0 11 15 14 21 1 0 5 chain 5600 chr18 78077248 + 31577777 31578220 L1MB8 1703 + 1314 1679 189079 63 345 270 14 4 1 17 chain 9748 chr18 78077248 + 31618246 31618397 L1MA4A 3247 + 2975 3130 161856 106 6 6 12 4 8 23 chain 13156 chr18 78077248 + 31653379 31653604 MER2 342 - 84 307 147621 72 7 0 6 0 7 55 1 0 31 21 20 32 chain 204867 chr18 78077248 + 31718578 31720871 L1PA5 6144 - 1938 4230 18865 1042 1 0 1250 chain 171181 chr18 78077248 + 31720875 31722789 L1PA5 6144 + 4210 6128 21916 676 0 1 324 0 1 74 0 2 840 chain 112816 chr18 78077248 + 31727505 31728901 L1P3 4156 - 17 1416 33434 22 1 0 10 2 0 273 0 1 266 0 4 12 4 0 6 0 4 17 2 0 524 0 2 72 0 1 185 chain 279260 chr18 78077248 + 31742119 31745214 L1PA3long 6157 + 3061 6157 14680 502 3 0 153 0 1 734 0 1 855 1 0 136 0 2 633 0 1 78 chain 29946 chr18 78077248 + 31746719 31747038 AluYb9 318 + 0 318 84982 123 1 0 195 chain 35802 chr18 78077248 + 31754495 31754934 L1PA7 6471 - 5 442 75128 48 7 5 384 chain 11079 chr18 78077248 + 31754946 31755094 L1PA7 6471 + 5905 6038 155897 94 1 0 9 14 0 30 chain 23081 chr18 78077248 + 31774714 31775004 AluSp 311 + 8 294 115232 254 4 0 32 chain 8818 chr18 78077248 + 31793131 31793236 MSTD 398 + 6 111 166562 105 chain 17161 chr18 78077248 + 31814274 31814572 LTR12C 1709 + 928 1193 135140 180 39 10 15 30 26 34 chain 1120 chr18 78077248 + 31814508 31814538 LTR12C 1709 + 885 915 143181 30 chain 3285 chr18 78077248 + 31814572 31814660 LTR12C 1709 + 986 1037 143181 18 43 6 27 chain 16549 chr18 78077248 + 31833263 31833503 MER1A 529 + 245 515 136799 117 0 27 68 20 23 35 chain 55840 chr18 78077248 + 31839856 31840568 L1PA7 6471 - 12 716 55222 218 13 15 112 17 7 352 chain 126001 chr18 78077248 + 31845536 31847116 THE1A-int 1579 + 0 1571 29098 473 22 23 504 10 5 274 9 5 260 1 0 27 chain 4137 chr18 78077248 + 31887897 31887948 MER5B 177 - 125 176 205398 51 chain 547429 chr18 78077248 + 31911079 31917100 L1PA2 6032 + 3 6028 1777 253 1 0 173 1 11 301 0 1 26 2 1 4410 1 0 833 1 0 5 3 0 11 chain 30005 chr18 78077248 + 31934857 31935235 MER41A 554 - 88 474 84793 28 1 9 349 chain 11645 chr18 78077248 + 31949879 31950018 L1PA5 6144 - 355 496 153714 110 0 2 29 chain 18308 chr18 78077248 + 31950018 31950230 L1PA5 6144 + 5930 6142 132059 212 chain 22158 chr18 78077248 + 31951786 31952053 AluY 311 + 36 305 119553 90 0 1 113 0 1 64 chain 59439 chr18 78077248 + 31977730 31978496 L1PB1 5432 - 902 1662 53149 206 5 0 325 6 4 7 0 2 29 1 0 187 chain 59586 chr18 78077248 + 31978509 31979446 L1PB1 5432 + 4534 5427 53060 91 1 0 4 1 0 197 0 1 276 41 22 13 1 0 9 1 0 11 5 1 9 6 4 39 0 1 8 2 1 10 6 5 44 1 0 16 2 0 6 16 6 19 2 0 5 1 0 14 2 0 14 0 2 8 1 0 22 8 12 18 2 0 5 chain 28744 chr18 78077248 + 31980440 31980740 AluYa5 310 - 9 309 90153 300 chain 41803 chr18 78077248 + 31987889 31988389 L1PA7 6471 - 7 506 66894 47 1 0 96 7 0 7 0 7 342 chain 454932 chr18 78077248 + 32003936 32009635 L1PA7 6471 - 11 5674 8585 160 7 6 147 10 11 124 4 2 389 1 0 200 0 1 412 3 1 332 0 4 513 16 11 47 1 2 524 0 3 328 3 4 368 0 1 231 27 5 457 0 9 26 1 2 63 29 0 376 0 1 191 6 7 127 0 1 95 8 27 278 0 22 28 45 5 122 chain 3662 chr18 78077248 + 32014813 32014854 MLT1C 463 - 410 451 212534 41 chain 20157 chr18 78077248 + 32033007 32033351 L1PA15 4387 + 3980 4313 126653 124 2 1 25 1 0 54 2 1 19 4 0 13 1 0 32 24 21 24 0 2 6 2 0 11 chain 25750 chr18 78077248 + 32035213 32035498 L1PA5 6144 - 857 1142 101086 285 chain 69422 chr18 78077248 + 32035499 32036303 L1PA5 6144 + 5328 6132 48641 507 0 1 55 3 2 239 chain 28540 chr18 78077248 + 32037187 32037486 AluYa5 310 - 11 310 91000 299 chain 43606 chr18 78077248 + 32049411 32049996 MLT2A2 560 + 0 560 64679 399 3 14 77 36 0 70 chain 7417 chr18 78077248 + 32051535 32051648 L1MC3 1789 - 593 706 174670 13 2 0 5 8 10 85 chain 3849 chr18 78077248 + 32061879 32061922 tRNA-Gln-CAG 43 + 0 43 209658 43 chain 77031 chr18 78077248 + 32096054 32097106 MER11B 1079 - 28 1079 44953 65 0 2 103 0 1 11 0 1 41 6 7 48 0 2 29 10 0 194 6 5 4 0 1 101 13 12 40 27 30 354 chain 102646 chr18 78077248 + 32114453 32115769 L1PA8 5853 - 0 1309 36095 93 1 0 19 3 2 34 13 12 14 1 0 71 1 0 46 1 0 477 1 3 70 4 7 43 19 13 405 chain 3571 chr18 78077248 + 32118205 32118251 MER5A 189 + 85 131 214118 46 chain 552249 chr18 78077248 + 32132342 32138359 L1PA2 6032 - 3 6032 1165 10 2 0 221 0 1 625 1 0 552 0 3 80 1 0 307 0 4 1649 0 5 43 0 1 1203 0 3 586 1 0 736 chain 91890 chr18 78077248 + 32157428 32158837 L1PB1 5432 - 5 1360 39002 5 2 0 18 5 4 9 1 0 21 1 0 24 5 15 4 1 0 19 9 0 11 5 1 16 1 0 36 8 7 16 2 1 48 0 3 1 5 0 9 6 2 10 1 0 9 1 0 24 37 11 98 0 3 5 12 2 168 22 15 191 3 0 69 4 2 19 4 13 169 10 12 265 chain 28829 chr18 78077248 + 32176821 32177173 L1PA7 6471 - 3 356 89762 16 2 3 334 chain 528638 chr18 78077248 + 32245397 32251491 L1PA4 6152 - 9 6140 4342 325 0 1 342 0 1 172 0 1 672 1 0 947 1 0 2260 2 7 354 2 1 5 0 1 573 3 0 114 10 5 196 6 45 109 chain 530675 chr18 78077248 + 32264113 32270555 L1PA7 6471 - 7 6469 4118 7 7 0 316 4 5 512 1 4 142 0 5 103 0 1 316 0 1 923 0 1 291 19 11 67 0 3 144 0 1 51 0 1 254 0 1 414 0 4 254 11 8 1228 0 3 112 20 16 31 0 4 512 37 38 357 19 30 54 0 1 236 chain 23845 chr18 78077248 + 32285918 32286203 AluSp 311 - 19 303 111214 139 1 0 145 chain 45888 chr18 78077248 + 32293405 32293906 L1PA2 6032 - 1311 1828 61975 335 0 12 144 0 4 22 chain 116349 chr18 78077248 + 32293906 32295180 L1PA2 6032 + 4728 6028 32323 451 1 0 330 0 27 492 chain 122456 chr18 78077248 + 32304744 32306224 L1PA7 6471 + 5006 6470 30234 128 16 4 486 2 0 660 0 1 176 3 0 9 chain 181287 chr18 78077248 + 32312801 32314965 HERVL-int 5654 - 3482 5654 20871 388 1 0 4 1 2 283 1 3 319 0 1 285 1 2 104 0 4 122 2 0 186 0 2 467 chain 24355 chr18 78077248 + 32314965 32315378 MLT2A1 477 - 0 477 108346 39 3 1 8 14 0 10 18 0 9 7 94 136 6 11 18 8 9 49 1 6 87 chain 116874 chr18 78077248 + 32327682 32329398 L1PB2 3958 - 120 1842 32170 63 2 1 11 5 17 36 0 17 14 1 0 62 1 0 37 0 1 34 2 1 43 0 3 33 0 2 11 4 0 13 2 0 62 5 0 14 1 0 57 2 0 125 11 12 217 0 1 27 1 0 134 0 2 71 0 1 188 66 51 204 8 9 100 10 9 39 chain 29235 chr18 78077248 + 32333335 32333645 AluYa5 310 - 0 310 87882 310 chain 23489 chr18 78077248 + 32346365 32346631 L1PA5 6144 + 5856 6128 113176 84 0 6 182 chain 23179 chr18 78077248 + 32351183 32351474 AluY 311 + 2 293 114772 127 1 2 79 1 0 83 chain 25320 chr18 78077248 + 32357461 32357852 THE1D 372 - 0 372 103120 35 2 1 143 13 14 103 38 19 57 chain 5571 chr18 78077248 + 32399914 32399995 MADE1 96 - 0 96 189363 38 6 21 37 chain 5095 chr18 78077248 + 32406213 32406336 L1PB1 5432 - 8 123 194129 4 1 0 15 2 1 7 0 1 5 1 0 21 1 0 23 3 1 14 14 11 12 chain 12068 chr18 78077248 + 32474266 32474419 L1P1 4361 + 1254 1407 151903 153 chain 557720 chr18 78077248 + 32474738 32480889 L1PA3long 6157 + 0 6157 535 1952 1 0 1236 0 1 77 0 4 147 0 1 528 0 1 2210 chain 3257 chr18 78077248 + 32521838 32521873 L1PA6 6164 + 6126 6161 219817 35 chain 5138 chr18 78077248 + 32529651 32529714 Charlie1a 1436 - 63 125 193702 56 1 0 6 chain 4426 chr18 78077248 + 32544310 32544366 MLT2C2 476 + 0 56 201643 56 chain 15929 chr18 78077248 + 32576179 32576410 MER1B 344 - 11 237 138582 47 26 21 158 chain 21380 chr18 78077248 + 32593556 32593960 L1MA5A 2387 - 91 464 122587 66 28 0 15 3 0 32 24 16 12 2 0 47 1 0 19 36 46 10 0 1 109 chain 24009 chr18 78077248 + 32613018 32613278 L1PA3long 6157 + 3686 3946 110279 260 chain 201952 chr18 78077248 + 32613278 32615486 L1PA3long 6157 + 3947 6157 19068 234 1 0 519 0 1 241 3 0 82 0 5 1128 chain 10040 chr18 78077248 + 32670283 32670408 L1MA6 2487 + 620 745 160379 125 chain 126742 chr18 78077248 + 32687986 32689526 L1PA8A 6298 - 6 1561 28870 180 0 1 468 2 3 60 6 0 85 5 8 263 0 10 209 0 7 179 1 0 82 chain 9347 chr18 78077248 + 32695710 32695830 L1PB2 3958 - 120 237 163811 63 1 0 26 2 0 28 chain 24307 chr18 78077248 + 32704081 32704405 THE1C 375 - 48 370 108619 110 0 3 6 3 0 7 1 0 98 1 0 98 chain 7762 chr18 78077248 + 32708490 32708614 MER2 342 + 165 279 172528 82 19 9 23 chain 443419 chr18 78077248 + 32725844 32731928 L1PA8 5853 - 0 5775 8941 93 1 0 16 1 0 44 1 0 8 6 5 8 1 0 71 0 1 43 1 0 99 3 5 376 0 2 60 318 25 6 0 4 20 1 2 589 3 4 102 1 2 322 0 1 42 7 0 242 0 2 119 1 0 47 6 5 288 5 9 176 2 0 51 0 5 21 0 4 65 26 0 37 9 5 10 0 5 177 0 1 487 3 7 27 1 11 84 25 0 199 1 2 213 16 15 45 1 2 47 2 0 5 4 6 226 19 28 340 1 3 570 27 15 67 0 1 5 1 0 32 6 5 84 10 19 11 chain 25217 chr18 78077248 + 32733403 32733698 AluSq10 312 + 2 294 103652 281 3 0 11 chain 6197 chr18 78077248 + 32775583 32775700 MER2 342 - 141 284 183602 69 29 55 19 chain 557396 chr18 78077248 + 32785743 32791773 L1PA2 6032 + 0 6031 567 493 0 1 5537 chain 284263 chr18 78077248 + 32796376 32799986 HERVH-int 3825 + 0 3825 14400 201 0 2 97 45 44 20 15 16 89 1 5 15 3 1 29 29 237 24 1 0 53 0 3 462 1 0 39 0 14 66 1 0 13 9 0 40 1 0 102 5 0 206 0 1 307 18 23 487 13 0 8 0 14 215 0 1 574 30 31 95 4 0 151 1 0 140 chain 40518 chr18 78077248 + 32841249 32841810 L1PA10 4194 - 33 550 68568 11 1 0 34 3 0 9 6 5 281 0 1 7 0 1 19 1 0 7 40 0 142 chain 26679 chr18 78077248 + 32846621 32846920 AluYk4 311 - 2 302 97393 39 0 1 260 chain 5261 chr18 78077248 + 32850850 32851333 LTR12C 1709 - 248 1021 192400 41 391 444 11 0 237 40 chain 26550 chr18 78077248 + 32857329 32857697 THE1C 375 + 0 375 97839 129 6 10 46 1 2 16 8 11 136 2 1 24 chain 4240 chr18 78077248 + 32857697 32857749 Tigger3c 601 + 485 537 204018 52 chain 5550 chr18 78077248 + 32863971 32864066 MER52A 1651 - 731 861 189568 28 18 53 49 chain 28599 chr18 78077248 + 32884565 32885001 MER4A1 472 + 0 458 90741 20 5 6 7 1 0 188 45 65 114 2 4 54 chain 4568 chr18 78077248 + 32902991 32903058 LTR35B 538 + 38 141 200027 13 7 43 47 chain 31101 chr18 78077248 + 32936115 32936515 LTR7 482 - 12 482 82341 176 0 31 38 0 1 109 8 46 69 chain 282612 chr18 78077248 + 32937773 32941345 HERVH-int 3825 - 0 3825 14496 555 0 1 327 6 19 449 0 2 325 0 4 42 47 52 105 13 14 150 0 1 202 5 0 107 1 0 40 9 0 69 1 0 225 1 5 164 0 1 123 0 4 44 3 8 7 2 0 15 0 2 12 123 352 66 1 0 333 chain 29304 chr18 78077248 + 32941347 32941755 LTR7 482 - 0 482 87546 183 1 36 38 0 1 109 27 65 50 chain 29040 chr18 78077248 + 32950468 32950776 AluYa5 310 - 3 310 88807 189 1 0 118 chain 26599 chr18 78077248 + 32961453 32961824 THE1B 368 - 0 368 97665 46 0 1 26 2 1 93 4 0 27 3 2 55 1 0 75 1 6 22 2 0 14 chain 84094 chr18 78077248 + 32983974 32984913 L1PA5 6144 - 7 950 41856 51 0 4 888 chain 8548 chr18 78077248 + 33001806 33001931 MSTA 426 + 29 178 168025 67 17 41 41 chain 24618 chr18 78077248 + 33008851 33009205 THE1D 372 - 0 372 106899 138 0 6 35 8 13 10 1 5 33 1 5 70 2 1 56 chain 3217 chr18 78077248 + 33011694 33011734 MLT1D 503 - 215 256 220622 21 0 1 19 chain 6808 chr18 78077248 + 33031145 33031387 MER73 639 - 29 267 178884 18 16 14 47 1 0 32 113 112 15 chain 85819 chr18 78077248 + 33051576 33052548 L1PA4 6152 - 1 985 41223 14 0 6 208 0 2 619 0 4 131 chain 126097 chr18 78077248 + 33067627 33069210 THE1B-int 1605 - 0 1604 29063 277 3 2 558 0 1 56 1 0 45 1 2 213 0 25 394 4 0 31 chain 27123 chr18 78077248 + 33078354 33078656 AluSp 311 - 9 311 95855 302 chain 19009 chr18 78077248 + 33111532 33111769 AluY 311 + 74 311 130089 237 chain 35478 chr18 78077248 + 33112409 33112870 LTR2 463 + 0 463 75584 360 14 15 8 0 1 79 chain 3440 chr18 78077248 + 33113948 33113990 L1ME1 1623 + 809 851 216374 42 chain 11435 chr18 78077248 + 33126696 33126839 MER107 203 - 58 203 154547 119 1 2 12 0 1 11 chain 22720 chr18 78077248 + 33156244 33156603 THE1A 353 - 0 353 116983 155 6 1 63 24 25 13 1 0 31 12 14 4 1 0 34 2 0 13 chain 11457 chr18 78077248 + 33159382 33159525 Tigger3c 601 - 91 237 154480 114 1 0 9 0 4 19 chain 533538 chr18 78077248 + 33207559 33213669 L1PA5 6144 + 0 6141 3760 146 9 15 364 0 1 1360 1 2 270 0 8 72 0 2 191 0 4 1080 8 9 151 3 0 669 0 8 947 0 4 83 0 3 600 0 1 22 1 0 114 1 0 4 3 0 11 chain 77387 chr18 78077248 + 33230081 33231095 MER11C 1089 - 37 1089 44787 57 0 2 39 0 2 24 1 2 97 6 4 40 4 12 174 8 9 40 14 17 73 0 1 123 0 17 49 5 8 109 0 2 151 chain 22762 chr18 78077248 + 33278659 33278955 AluSg7 307 + 0 290 116772 9 1 0 114 11 6 161 chain 130804 chr18 78077248 + 33302503 33304053 L1PA5 6144 - 9 1563 27908 9 2 0 123 4 7 528 0 1 81 0 1 8 3 2 77 1 5 628 6 7 36 3 0 41 chain 137580 chr18 78077248 + 33306861 33308806 L1PA16 3655 + 1114 3057 26547 94 9 8 54 63 62 112 0 1 295 0 1 54 1 0 8 0 2 100 0 1 122 0 1 75 0 4 118 0 1 276 0 1 15 8 4 146 6 5 77 0 5 94 10 8 43 1 0 21 1 0 60 0 2 7 7 5 10 3 0 4 4 0 47 chain 24706 chr18 78077248 + 33308897 33309258 THE1B 368 + 0 366 106399 13 2 0 27 6 11 114 7 8 25 0 2 88 10 9 69 chain 35438 chr18 78077248 + 33315303 33315764 LTR2 463 + 0 463 75633 212 17 17 65 0 1 65 14 15 88 chain 50201 chr18 78077248 + 33316856 33317538 L1PA13 3608 + 2719 3403 58869 180 0 1 157 4 3 64 5 4 31 1 0 19 0 1 89 7 5 62 1 0 56 0 6 6 chain 7374 chr18 78077248 + 33331614 33331703 LTR9 672 - 583 672 174946 89 chain 546381 chr18 78077248 + 33340274 33346373 L1PA3long 6157 + 0 6157 1895 162 1 0 579 0 1 88 2 32 305 0 3 20 1 4 436 0 22 189 6 11 733 6 0 870 1 0 491 0 1 827 0 1 1382 chain 533526 chr18 78077248 + 33370584 33376711 L1PA5 6144 + 3 6144 3762 1441 0 4 380 6 11 163 1 2 746 0 1 400 1 0 25 2 1 1078 0 3 487 2 1 454 0 1 90 1 0 176 0 1 442 0 2 232 chain 5034 chr18 78077248 + 33376711 33376768 L1P3 4156 + 3572 3629 187720 57 chain 288425 chr18 78077248 + 33392134 33395508 L1PA6 6164 + 2757 6162 14129 56 5 11 38 0 1 274 1 2 43 2 3 4 0 1 821 0 1 289 0 2 209 0 4 482 0 8 311 0 3 598 5 7 91 2 1 134 0 2 9 chain 6384 chr18 78077248 + 33420485 33420565 MER4E1 777 - 622 702 182155 80 chain 32060 chr18 78077248 + 33424025 33424459 LTR7 482 + 7 476 80754 94 20 14 132 0 31 38 0 10 150 chain 278548 chr18 78077248 + 33424468 33428130 HERVH-int 3825 + 0 3825 14716 181 1 5 147 2 1 30 15 16 71 22 0 6 4 28 42 4 61 18 29 164 8 1 0 65 0 3 18 13 4 368 16 1 22 0 15 150 25 9 37 1 0 183 4 8 118 0 1 197 34 0 109 11 16 35 0 3 469 0 1 54 0 1 102 0 2 410 2 1 4 0 1 491 0 1 50 0 5 93 chain 31117 chr18 78077248 + 33429944 33430382 LTR7 482 + 0 474 82311 101 20 14 115 0 31 54 1 11 39 1 2 107 chain 26176 chr18 78077248 + 33434996 33435347 MLT2A1 477 + 2 371 99298 166 5 2 34 0 12 54 6 15 86 chain 445188 chr18 78077248 + 33435454 33441012 HERVL-int 5654 + 0 5654 8898 102 10 7 307 0 2 538 5 34 401 5 9 131 0 1 192 13 19 26 0 4 170 9 19 124 1 0 4 5 6 36 0 1 54 5 23 60 0 1 88 23 24 487 5 13 361 15 21 750 3 0 9 0 3 730 6 0 10 1 7 201 1 0 134 0 10 94 6 5 350 0 1 53 1 0 32 chain 33797 chr18 78077248 + 33441012 33441507 MLT2A1 477 + 0 476 77941 168 5 2 90 21 22 103 10 0 8 12 0 9 13 18 56 chain 79878 chr18 78077248 + 33446062 33446935 L1PA3long 6157 - 0 874 43648 856 0 1 17 chain 33216 chr18 78077248 + 33446935 33447301 L1PA3long 6157 + 3322 3688 78568 366 chain 146964 chr18 78077248 + 33447301 33448919 L1PA3long 6157 + 3689 5307 25026 1618 chain 24752 chr18 78077248 + 33456374 33456730 THE1B 368 + 0 368 106158 45 26 41 83 1 0 31 2 0 168 chain 19132 chr18 78077248 + 33460655 33460881 AluSc5 308 + 38 265 129735 56 0 1 170 chain 3867 chr18 78077248 + 33476019 33476082 L1MD2 1676 + 1446 1502 209344 49 7 0 7 chain 3916 chr18 78077248 + 33476723 33476808 L1MC4 1079 - 968 1052 208604 34 31 30 20 chain 540553 chr18 78077248 + 33477449 33483590 L1PA4 6152 + 6 6143 2727 427 0 1 241 4 3 232 0 1 628 0 1 31 1 0 179 1 0 157 5 0 20 1 0 82 1 2 1160 1 0 769 0 1 2062 0 1 139 chain 87861 chr18 78077248 + 33486112 33487094 L1PA5 6144 - 3 984 40425 143 1 0 838 chain 13711 chr18 78077248 + 33491142 33491412 MLT1A0 366 + 56 317 145568 88 47 39 11 36 35 88 chain 54987 chr18 78077248 + 33503231 33503965 MER4E1 777 - 0 777 55714 7 0 2 157 1 2 58 1 9 39 0 1 89 0 1 55 7 26 117 0 11 25 0 1 133 4 0 24 0 3 17 chain 3430 chr18 78077248 + 33513679 33513728 MER44B 551 + 1 50 216571 6 0 1 7 1 0 35 chain 23683 chr18 78077248 + 33538610 33538885 AluYc 301 + 11 288 112137 109 0 2 166 chain 26956 chr18 78077248 + 33548010 33548400 LTR8 732 - 368 732 96421 32 3 0 174 26 0 115 17 20 23 chain 33278 chr18 78077248 + 33548580 33548969 MER9a1 513 + 68 481 78760 181 0 22 30 0 2 178 chain 21780 chr18 78077248 + 33549394 33549681 AluSc5 308 + 11 289 121102 130 3 0 6 0 3 132 9 0 7 chain 24114 chr18 78077248 + 33567902 33568194 AluSp 311 - 16 307 109675 238 6 5 48 chain 25396 chr18 78077248 + 33628026 33628328 AluSp 311 - 7 311 102701 27 0 2 275 chain 29878 chr18 78077248 + 33641998 33642311 AluYb8 318 + 0 313 85175 313 chain 4026 chr18 78077248 + 33644823 33644873 LTR12D 1347 + 1048 1097 206988 34 1 0 15 chain 154332 chr18 78077248 + 33656880 33658670 SVA_D 2077 - 21 2077 24062 512 0 262 244 1 4 31 0 1 9 0 2 30 0 1 9 19 61 8 40 0 863 5 0 19 chain 3362 chr18 78077248 + 33657743 33657783 SVA_D 2077 - 1235 1275 141189 40 chain 7627 chr18 78077248 + 33658676 33658813 Tigger3b 1229 + 528 684 173372 37 29 44 17 0 4 54 chain 4649 chr18 78077248 + 33671203 33671332 Tigger4 2445 - 86 208 199077 19 44 39 16 2 1 14 1 0 33 chain 4984 chr18 78077248 + 33762577 33762651 MADE1 96 - 1 96 195312 36 5 26 33 chain 10016 chr18 78077248 + 33771009 33771248 MSTA 426 + 188 426 160503 18 14 0 10 58 52 6 1 0 22 7 27 103 chain 30174 chr18 78077248 + 33772992 33773310 AluYb8 318 + 0 318 84258 318 chain 10960 chr18 78077248 + 33789677 33789819 L1PB2 3958 - 120 264 156357 63 1 0 50 1 3 4 0 1 23 chain 6218 chr18 78077248 + 33815009 33815085 THE1D-int 1627 - 5 82 183429 27 0 1 49 chain 545675 chr18 78077248 + 33815097 33821115 L1PA3long 6157 - 0 6151 1993 159 0 1 398 0 1 1653 0 1 639 1 0 2401 8 136 310 0 1 92 0 1 210 0 1 147 chain 21832 chr18 78077248 + 33822518 33822872 THE1D 372 - 0 372 120889 63 3 4 112 6 9 52 33 37 14 1 11 70 chain 4740 chr18 78077248 + 33845240 33845384 MER65D 500 - 356 500 198022 11 4 0 16 9 10 23 48 51 33 chain 23051 chr18 78077248 + 33853001 33853272 AluY 311 + 39 310 115387 84 1 0 9 0 1 177 chain 208643 chr18 78077248 + 33896685 33899144 L1PA6 6164 - 2 2458 18592 7 5 0 139 1 0 546 19 18 155 1 0 435 0 3 180 1 0 38 1 0 420 0 4 511 chain 125647 chr18 78077248 + 33899144 33900631 L1PA6 6164 + 2208 3687 29075 96 3 0 30 11 0 539 0 1 208 6 10 478 0 1 116 chain 3690 chr18 78077248 + 33907357 33907401 MADE1 96 + 45 89 212080 44 chain 12039 chr18 78077248 + 33915055 33915544 MER30 238 - 0 199 152034 40 3 0 39 7 6 29 310 24 61 chain 25274 chr18 78077248 + 34017628 34017924 AluSc5 308 - 12 308 103352 296 chain 11654 chr18 78077248 + 34029906 34030169 L1PB1 5432 - 10 252 153673 18 1 0 13 1 0 21 1 0 16 33 28 18 23 12 16 1 0 43 1 0 16 2 1 13 4 5 22 chain 39031 chr18 78077248 + 34082208 34082677 L1PA7 6471 - 1 468 70690 9 5 0 261 0 4 87 2 1 105 chain 32267 chr18 78077248 + 34084346 34084712 L1PA3long 6157 + 5788 6152 80414 228 1 0 127 1 0 9 chain 16025 chr18 78077248 + 34089234 34089418 AluY 311 + 127 311 138293 184 chain 88915 chr18 78077248 + 34132275 34133619 L1P1 4361 - 34 1055 40039 22 1 0 140 322 0 15 1 0 717 0 1 126 chain 84613 chr18 78077248 + 34133619 34134609 L1PA5 6144 + 5154 6142 41639 140 1 0 507 0 1 192 1 3 138 4 0 7 chain 9341 chr18 78077248 + 34159668 34159818 MLT1A1 405 + 245 403 163848 19 18 28 84 4 2 25 chain 24817 chr18 78077248 + 34194803 34195112 AluSp 311 - 3 311 105790 35 6 5 268 chain 24235 chr18 78077248 + 34295090 34295461 THE1C 375 + 6 375 109024 80 4 5 88 0 3 18 37 31 144 chain 84808 chr18 78077248 + 34330403 34331719 L1PA14 3548 - 92 1392 41592 42 2 1 17 1 0 9 1 0 5 7 5 12 32 23 10 1 0 102 6 11 77 0 1 4 1 0 6 2 0 13 8 4 92 21 22 42 7 5 14 3 1 15 4 3 124 1 2 106 1 0 123 0 4 25 7 6 87 4 8 154 5 0 34 1 3 4 1 0 15 0 1 68 chain 20329 chr18 78077248 + 34331865 34332231 THE1C 375 - 2 375 126146 24 1 0 163 8 11 29 78 83 63 chain 3172 chr18 78077248 + 34393466 34393578 MER58A 224 + 45 157 221525 14 47 48 11 4 3 36 chain 5485 chr18 78077248 + 34399684 34399777 MLT1C 463 + 0 87 190166 20 6 0 4 1 0 6 1 0 5 0 2 50 chain 21233 chr18 78077248 + 34407887 34408135 AluSq2 311 + 0 288 123086 144 0 40 104 chain 33777 chr18 78077248 + 34432293 34432738 LTR3B_ 500 + 6 457 77975 72 1 0 225 0 1 31 1 4 18 0 1 49 3 5 45 chain 519676 chr18 78077248 + 34453653 34460437 L1PA7 6471 - 1 6468 5191 143 19 20 499 0 3 184 1 0 15 0 4 166 1 0 126 0 5 127 0 7 319 5 9 117 0 1 168 6 5 49 1 0 4 5 6 281 0 2 373 9 1 340 1 0 19 1 0 9 0 1 578 0 4 134 0 3 106 25 1 64 0 2 67 314 0 160 17 0 184 0 4 23 0 7 371 1 0 470 0 1 8 12 8 310 6 0 164 0 2 81 19 17 292 0 3 227 23 32 99 0 1 41 chain 11452 chr18 78077248 + 34471648 34471808 L1PB2 3958 - 122 279 154492 61 1 0 21 3 1 74 chain 145746 chr18 78077248 + 34489097 34490786 L1PA5 6144 - 0 1700 25219 259 1 0 102 3 0 5 6 8 301 0 2 177 1 5 71 0 8 548 1 0 214 chain 28202 chr18 78077248 + 34514275 34514585 L1PA3long 6157 - 0 310 92304 310 chain 55318 chr18 78077248 + 34516152 34516819 L1PA8A 6298 - 19 698 55511 95 0 1 219 4 15 349 chain 61134 chr18 78077248 + 34516819 34517566 L1PA8A 6298 + 4829 5575 52279 102 2 0 26 16 15 394 0 1 122 6 9 54 2 0 23 chain 25492 chr18 78077248 + 34533954 34534226 AluYb8 318 - 8 280 102267 272 chain 253785 chr18 78077248 + 34539997 34543024 L1P2 5180 + 194 3235 16043 53 1 0 206 0 2 60 6 5 263 1 16 450 0 1 659 0 1 221 0 1 185 11 5 473 0 2 67 0 1 306 1 0 64 chain 34824 chr18 78077248 + 34553019 34553432 L1PA5 6144 + 5716 6129 76441 413 chain 28732 chr18 78077248 + 34555139 34555444 AluYa5 310 - 5 310 90196 305 chain 109733 chr18 78077248 + 34566285 34567461 L1HS 6032 + 4856 6032 34273 1176 chain 37269 chr18 78077248 + 34574929 34575390 L1PA7 6471 - 9 469 73137 117 2 1 342 chain 65142 chr18 78077248 + 34583496 34584298 L1PB1 5432 - 895 1704 50506 10 0 4 135 1 0 7 0 2 220 0 1 367 0 1 62 chain 52777 chr18 78077248 + 34584307 34585191 L1PB1 5432 + 4555 5423 57148 71 3 0 163 11 19 145 1 0 141 9 14 6 5 0 24 1 0 4 22 17 9 2 0 51 1 0 10 15 14 38 1 0 8 39 37 20 2 0 24 1 0 21 1 0 13 11 8 11 chain 15938 chr18 78077248 + 34586490 34586675 L1PA5 6144 - 0 192 138554 124 0 7 61 chain 7279 chr18 78077248 + 34601627 34601739 LTR9B 643 + 445 561 175584 62 11 1 9 0 14 30 chain 65025 chr18 78077248 + 34604351 34605109 L1PA5 6144 - 9 768 50563 720 0 1 38 chain 258920 chr18 78077248 + 34605111 34608076 L1PA5 6144 + 2401 5390 15754 27 0 4 826 0 2 32 1 0 208 0 1 42 1 0 600 0 1 182 0 1 10 0 4 316 0 1 139 5 0 8 0 5 396 0 8 83 0 4 89 chain 44148 chr18 78077248 + 34610655 34611159 L1PA6 6164 - 7 511 64012 504 chain 74033 chr18 78077248 + 34639216 34640115 L1PA8 5853 + 4906 5849 46495 101 0 2 555 1 0 44 2 0 19 0 31 20 2 1 8 2 1 48 0 17 7 1 0 89 chain 3849 chr18 78077248 + 34640633 34640679 MADE1 96 + 49 96 209652 22 0 1 24 chain 23474 chr18 78077248 + 34652633 34652913 L1PA8A 6298 - 7 287 113254 280 chain 45133 chr18 78077248 + 34652913 34653459 L1PA8A 6298 + 5115 5670 62892 83 0 1 266 0 1 19 4 6 100 4 9 70 chain 40664 chr18 78077248 + 34654367 34654847 L1HS 6032 - 4617 5100 68345 373 0 3 107 chain 414387 chr18 78077248 + 34654848 34659453 L1PA4 6152 + 1539 6151 9687 2415 0 2 282 1 2 108 0 4 1799 chain 349723 chr18 78077248 + 34676057 34680031 L1PA4 6152 - 15 3996 11617 41 0 1 514 0 4 533 0 1 718 0 1 1147 1 0 43 3 4 974 chain 161471 chr18 78077248 + 34680031 34681901 L1P1 4361 + 28 1902 23120 92 20 6 10 10 24 886 1 4 792 0 1 59 chain 39781 chr18 78077248 + 34688746 34689204 L1PA6 6164 - 2 460 69654 458 chain 516486 chr18 78077248 + 34691519 34697604 L1PA5 6144 + 0 6132 5531 121 0 14 289 0 1 4 1 0 363 0 1 141 0 20 216 24 15 456 0 1 1560 1 0 11 5 0 45 0 1 159 0 1 739 1 2 187 0 4 940 4 0 6 0 4 11 0 1 313 0 18 188 0 1 119 7 6 174 chain 13293 chr18 78077248 + 34728926 34729104 L1PA10 4194 + 3972 4150 147120 69 0 1 7 2 3 54 0 1 10 3 0 33 chain 5678 chr18 78077248 + 34757974 34758056 MADE1 96 - 0 96 188322 31 5 19 46 chain 29426 chr18 78077248 + 34780492 34780799 AluYb8 318 + 0 307 86957 307 chain 404510 chr18 78077248 + 34793125 34797855 L1PA6 6164 - 11 4728 9961 1629 1 0 220 0 1 139 1 2 207 0 1 75 0 1 646 0 2 40 0 1 4 0 1 376 0 16 277 1 2 125 14 2 61 26 0 229 6 7 653 chain 44435 chr18 78077248 + 34797885 34798510 LTR6A 649 - 14 643 63654 46 1 0 61 0 4 418 76 78 6 1 0 16 chain 109084 chr18 78077248 + 34798516 34799923 L1P2 5180 - 3767 5178 34424 326 0 3 263 1 0 28 1 0 36 6 7 90 0 3 67 0 4 71 1 0 8 1 0 258 3 2 49 1 0 49 5 4 143 chain 22206 chr18 78077248 + 34809558 34809867 AluSc8 310 + 2 303 119324 32 1 2 79 14 2 15 8 11 160 chain 3135 chr18 78077248 + 34818117 34818155 MIRb 242 + 90 128 222253 38 chain 4425 chr18 78077248 + 34819135 34819187 MIRb 242 - 102 154 201647 52 chain 24134 chr18 78077248 + 34891480 34891769 AluSx3 311 + 10 300 109561 122 0 1 167 chain 26080 chr18 78077248 + 34891794 34892103 AluY 311 + 2 311 99706 130 0 1 169 1 0 9 chain 54283 chr18 78077248 + 34951977 34952604 L1PA5 6144 + 5517 6143 56176 476 1 0 150 chain 25816 chr18 78077248 + 35041218 35041576 THE1C 375 - 14 375 100805 12 1 0 117 0 3 10 13 16 85 1 0 4 0 1 99 2 0 14 chain 12845 chr18 78077248 + 35042714 35042887 MER30 238 + 58 238 148869 54 4 14 66 3 0 46 chain 29449 chr18 78077248 + 35175714 35176024 AluYa5 310 - 0 310 86851 310 chain 41042 chr18 78077248 + 35181310 35181788 L1PA5 6144 - 0 485 67839 170 1 8 307 chain 21891 chr18 78077248 + 35185888 35186240 THE1B 368 + 0 368 120658 44 43 58 61 10 9 26 7 9 54 0 1 32 1 0 74 chain 15048 chr18 78077248 + 35208619 35208815 MLT2A2 560 - 364 560 141181 13 1 0 61 3 4 118 chain 247833 chr18 78077248 + 35226259 35229138 L1PA5 6144 - 1 2986 16365 10 3 1 648 0 2 62 0 1 132 1 0 890 5 10 411 6 7 158 1 91 37 3 1 8 0 1 319 0 12 63 1 0 121 chain 7758 chr18 78077248 + 35234356 35234475 MER50B 698 + 488 605 172556 53 1 0 34 9 8 22 chain 83361 chr18 78077248 + 35272914 35273862 L1PA6 6164 - 3 951 42172 64 0 1 137 0 1 485 1 0 165 1 0 95 chain 5517 chr18 78077248 + 35315543 35315617 MER5B 177 - 38 110 189869 16 2 0 56 chain 28920 chr18 78077248 + 35315631 35315939 AluYa5 310 - 2 310 89369 308 chain 21423 chr18 78077248 + 35322075 35322311 L1PA5 6144 + 5902 6138 122429 236 chain 20759 chr18 78077248 + 35366974 35367280 L1PA11 4918 - 417 726 124763 13 1 0 16 2 0 78 2 1 17 0 15 20 18 10 139 chain 333464 chr18 78077248 + 35379531 35384204 L1PA8 5853 - 8 4318 12066 72 24 22 10 2 1 52 1 0 9 12 11 59 2 0 8 6 0 37 1 0 82 324 0 118 0 1 120 0 1 148 1 0 84 1 3 353 0 1 319 1 0 36 0 10 156 17 16 31 7 0 125 0 1 309 10 0 107 6 1 147 1 3 240 0 1 183 0 8 18 26 6 6 0 1 42 1 0 16 0 1 28 0 5 352 0 4 147 3 4 250 6 1 55 13 0 293 0 1 56 2 0 49 0 1 89 chain 567286 chr18 78077248 + 35399701 35405732 L1HS 6032 + 0 6031 74 6031 chain 540045 chr18 78077248 + 35406573 35412895 L1PA4 6152 - 12 6152 2813 1024 1 0 404 1 0 94 165 0 845 0 1 743 0 1 286 0 5 78 3 0 569 1 0 4 4 5 187 0 1 1186 0 19 12 45 3 597 0 3 73 chain 3462 chr18 78077248 + 35408114 35408152 L1PA4 6152 - 92 130 215949 38 chain 9079 chr18 78077248 + 35408152 35408252 L1PA4 6152 + 6051 6151 165169 100 chain 75350 chr18 78077248 + 35421443 35422276 L1PA3long 6157 - 523 1364 45845 326 0 3 321 0 1 12 1 5 173 chain 47298 chr18 78077248 + 35422276 35422788 L1PA3long 6157 + 5645 6157 60968 512 chain 3783 chr18 78077248 + 35450103 35450148 MER65C 458 - 5 50 210630 45 chain 10551 chr18 78077248 + 35455252 35455375 HERVL-int 5654 + 678 801 158043 123 chain 30906 chr18 78077248 + 35456769 35457224 MLT2A1 477 + 0 477 82676 170 4 1 63 1 0 4 0 1 88 3 0 49 33 61 40 chain 323182 chr18 78077248 + 35457256 35461587 HERVL-int 5654 + 32 5654 12471 34 1 0 4 0 1 10 0 1 214 0 11 54 4 0 82 5 2 493 8 12 683 0 1 96 0 2 956 2 1 5 0 1 51 0 1598 531 22 41 32 340 0 277 5 4 128 1 4 293 chain 26030 chr18 78077248 + 35460572 35460882 AluYk4 311 - 0 311 99902 105 8 9 197 chain 25615 chr18 78077248 + 35492764 35493140 THE1D 372 + 2 372 101650 74 20 1 51 0 4 34 6 10 14 3 8 174 chain 3441 chr18 78077248 + 35502679 35502722 Tigger1 2417 - 121 164 216364 43 chain 7519 chr18 78077248 + 35512558 35512644 L1PA3long 6157 + 6071 6157 174051 86 chain 75393 chr18 78077248 + 35519389 35520309 L1PA7 6471 - 4 1865 45779 8 4 0 349 0 1 454 4 948 101 chain 155085 chr18 78077248 + 35520309 35522006 L1PA3long 6157 + 4460 6157 23969 1697 chain 65450 chr18 78077248 + 35523209 35523992 L1P3 4156 + 3359 4138 50356 141 1 0 607 2 0 7 2 1 23 chain 24846 chr18 78077248 + 35562003 35562277 L1PA3long 6157 + 5883 6157 105648 274 chain 60972 chr18 78077248 + 35596949 35597713 L1PA10 4194 - 44 842 52346 25 11 8 160 3 39 327 0 1 238 chain 28769 chr18 78077248 + 35635805 35636193 MLT2A1 477 - 92 477 90027 16 3 0 165 0 1 23 0 1 9 24 21 99 0 1 49 chain 84742 chr18 78077248 + 35639233 35640177 L1PA3long 6157 - 5 948 41622 852 1 0 91 chain 12635 chr18 78077248 + 35640182 35640418 HSMAR2 1300 + 1048 1293 149711 17 10 16 7 1 0 101 15 24 35 11 7 16 1 0 22 chain 36337 chr18 78077248 + 35690791 35691208 L1PA4 6152 - 11 446 74455 249 1 0 25 0 18 137 0 1 5 chain 114131 chr18 78077248 + 35732271 35733859 L1PREC2 3366 + 908 2475 33058 227 16 17 95 15 14 44 9 17 332 0 3 108 5 0 56 1 4 90 25 0 10 3 17 15 22 7 55 8 4 452 chain 33902 chr18 78077248 + 35734423 35734800 L1PA5 6144 - 5 383 77768 169 0 1 208 chain 31458 chr18 78077248 + 35812539 35812888 L1PA4 6152 - 360 709 81722 349 chain 31256 chr18 78077248 + 35812888 35813247 L1PA4 6152 + 5784 6143 82070 359 chain 106523 chr18 78077248 + 35846669 35847918 L1PA7 6471 - 865 2117 35113 241 0 3 311 0 1 58 1 0 161 2 1 89 0 1 386 chain 67700 chr18 78077248 + 35847918 35848790 L1PA7 6471 + 5646 6455 49364 616 63 0 34 0 1 4 1 0 154 chain 28874 chr18 78077248 + 35882465 35882773 AluYg6 310 + 0 308 89572 308 chain 114561 chr18 78077248 + 35974139 35975576 HERVL-int 5654 + 3002 5654 32933 763 19 1224 233 1 0 4 0 1 113 0 6 20 0 3 212 2 3 70 chain 110852 chr18 78077248 + 35988753 35990282 THE1B-int 1605 + 34 1599 33982 73 0 3 158 0 2 156 0 25 147 0 1 71 0 3 14 111 112 558 0 1 241 chain 54803 chr18 78077248 + 36008099 36008882 MER4E1 777 - 0 777 55839 22 0 4 141 7 5 18 14 13 23 12 13 248 1 3 12 0 2 18 11 9 53 1 0 168 9 0 25 chain 25841 chr18 78077248 + 36053049 36053390 THE1B 368 + 0 368 100694 40 0 15 14 0 14 80 6 5 34 1 0 166 chain 24749 chr18 78077248 + 36096484 36096841 THE1B 368 - 0 368 106179 61 18 15 123 1 0 104 6 21 44 chain 34136 chr18 78077248 + 36115400 36115948 LTR3B_ 500 + 0 500 77429 11 1 0 62 1 0 3 1 0 170 14 0 54 1 2 36 11 13 21 0 1 25 60 25 34 2 2 41 chain 21138 chr18 78077248 + 36125729 36126011 AluSp 311 - 19 300 123418 79 19 18 184 chain 73680 chr18 78077248 + 36219372 36220440 MER11A 1151 - 0 1149 46693 64 3 2 87 13 12 56 6 7 30 1 60 18 0 1 65 0 4 39 3 4 11 6 9 138 0 12 33 0 2 147 23 0 45 0 11 38 0 2 24 1 0 23 3 6 114 0 8 77 chain 30310 chr18 78077248 + 36233498 36233982 MLT2A1 477 + 0 477 83880 96 0 1 39 14 15 17 3 7 119 10 9 81 66 53 28 0 1 11 chain 23422 chr18 78077248 + 36248670 36248990 MLT2A1 477 + 70 385 113531 98 5 2 101 10 8 106 chain 12708 chr18 78077248 + 36249136 36249280 L1PA8A 6298 - 462 606 149430 144 chain 12361 chr18 78077248 + 36249286 36249439 L1PA8A 6298 + 6137 6290 150796 153 chain 184201 chr18 78077248 + 36251252 36253577 HERVL-int 5654 + 2813 5633 20570 208 7 8 359 0 1 290 4 5 465 6 17 89 0 1 242 0 1 125 0 3 70 5 476 49 1 2 142 0 3 42 0 1 221 chain 6418 chr18 78077248 + 36253599 36253671 MLT2A1 477 + 78 150 181885 72 chain 7434 chr18 78077248 + 36297934 36298074 LTR12C 1709 - 891 990 174552 69 41 0 30 chain 39852 chr18 78077248 + 36300066 36300536 LTR10C 591 + 0 586 69530 334 0 1 79 0 115 57 chain 194007 chr18 78077248 + 36342522 36345254 L1PB1 5432 + 2695 5420 19672 122 2 1 7 0 1 15 2 1 32 0 4 8 0 3 53 10 12 171 7 10 561 2 0 27 8 10 451 3 4 150 7 12 267 0 4 9 15 20 450 0 1 13 3 0 20 1 0 13 1 0 9 6 2 9 2 0 53 2 1 11 6 5 44 1 0 13 27 15 18 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 24351 chr18 78077248 + 36353059 36353425 Tigger3b 1229 - 727 1097 108371 119 9 10 38 12 16 27 6 0 9 5 10 141 chain 31360 chr18 78077248 + 36407892 36408280 MLT2A1 477 - 82 477 81887 10 0 2 210 1 5 27 0 1 140 chain 3699 chr18 78077248 + 36455772 36455831 L1MA5A 2387 - 91 151 211952 23 6 7 30 chain 425073 chr18 78077248 + 36494681 36499979 L1PA7 6471 - 1 5771 9417 4 1 0 606 1 0 241 3 0 218 1 7 6 6 0 149 0 3 40 1 0 57 0 11 60 0 422 67 0 1 4 1 0 291 9 10 438 4 1 348 3 2 184 0 1 230 2 1 85 0 12 215 0 4 27 0 1 91 0 2 7 2 8 33 3 1 233 0 1 191 0 16 41 18 19 328 2 1 252 0 1 335 0 1 196 0 3 264 chain 53600 chr18 78077248 + 36500000 36500670 L1P3 4156 - 3483 4150 56612 263 2 1 89 1 0 71 1 0 243 chain 5247 chr18 78077248 + 36532113 36532178 MER2 342 + 146 211 192543 65 chain 4272 chr18 78077248 + 36545473 36545523 MER63A 208 - 52 102 203602 50 chain 7093 chr18 78077248 + 36563884 36563972 MLT1B 390 + 298 386 176810 88 chain 19175 chr18 78077248 + 36600882 36601119 L1PA7 6471 - 7 244 129596 237 chain 5854 chr18 78077248 + 36664206 36664271 L1PA2 6032 + 5967 6032 186647 65 chain 16824 chr18 78077248 + 36687910 36688238 THE1D 372 + 0 336 136052 57 30 22 59 0 1 22 68 83 92 chain 335259 chr18 78077248 + 36702598 36706309 L1PA3long 6157 + 2444 6157 12018 274 0 1 2664 0 1 773 chain 198464 chr18 78077248 + 36706763 36709704 L1PB1 5432 + 2585 5422 19322 57 12 1 191 1 0 223 1 0 225 1 0 449 2 0 3 12 0 228 0 1 90 7 14 124 3 4 293 0 3 13 23 8 289 5 9 14 7 10 18 0 3 131 30 24 41 1 0 47 62 16 24 1 0 6 1 0 13 6 2 9 2 0 51 1 0 18 1 0 44 1 0 11 28 17 17 3 1 5 1 0 12 12 10 19 1 0 18 1 0 13 1 0 18 chain 36822 chr18 78077248 + 36739515 36739986 LOR1a 498 - 22 498 73774 126 1 5 296 0 1 48 chain 81220 chr18 78077248 + 36792908 36793954 MER11C 1089 - 26 1089 43074 197 0 1 127 0 1 38 1 0 7 0 4 93 6 4 12 46 47 146 1 0 69 0 4 58 0 9 105 0 1 140 chain 125591 chr18 78077248 + 36807234 36808808 THE1A-int 1579 + 0 1579 29218 270 0 2 72 2 0 94 0 2 62 2 1 480 8 7 504 0 5 80 chain 27191 chr18 78077248 + 36808808 36809161 THE1A 353 + 0 353 95624 111 1 0 39 1 2 201 chain 226091 chr18 78077248 + 36834212 36836706 L1PA3long 6157 + 3657 6152 17526 838 0 2 810 1 0 845 chain 10719 chr18 78077248 + 36861327 36861546 MER30 238 - 0 238 157328 35 11 8 57 2 0 5 15 34 50 26 31 18 chain 3826 chr18 78077248 + 36867194 36867245 L1MB4 1306 - 419 466 209979 26 4 0 21 chain 2502 chr18 78077248 + 36889580 36889610 LTR12C 1709 + 987 1017 233122 30 chain 3549 chr18 78077248 + 36889629 36889669 LTR12C 1709 + 795 835 214563 40 chain 4585 chr18 78077248 + 36896011 36896102 MER5A 189 - 4 95 199799 47 2 0 5 17 19 20 chain 5497 chr18 78077248 + 36947861 36947927 MER41A 554 - 88 155 190077 38 0 1 28 chain 36932 chr18 78077248 + 36951073 36951506 L1PA4 6152 + 5708 6143 73611 213 0 1 116 0 1 104 chain 3393 chr18 78077248 + 36962301 36962337 MER21C 908 + 341 377 217246 36 chain 344493 chr18 78077248 + 36971611 36976169 L1PA8 5853 + 1235 5825 11772 33 0 1 46 13 14 35 4 3 156 8 23 143 1 4 142 0 2 60 8 10 74 15 19 17 2 1 62 1 2 54 4 0 332 7 5 446 3 1 10 3 7 452 4 7 96 0 1 313 0 3 150 0 2 245 20 21 4 1 0 145 2 1 113 0 1 66 6 10 25 1 0 414 0 1 25 0 1 531 1 0 46 2 0 57 0 1 10 28 26 56 1 0 65 chain 4147 chr18 78077248 + 36980617 36980660 L1PA3long 6157 + 5963 6006 205286 43 chain 13941 chr18 78077248 + 36980660 36980809 L1PA3long 6157 + 6008 6157 144788 149 chain 10024 chr18 78077248 + 36997130 36997272 Tigger3b 1229 - 944 1096 160465 25 0 2 22 0 1 45 0 3 5 3 0 36 0 7 6 chain 10781 chr18 78077248 + 37006423 37006559 L1PB1 5432 - 3620 3755 157069 107 1 0 28 chain 212167 chr18 78077248 + 37008437 37011505 L1PB1 5432 + 2506 5427 18346 28 0 1 189 0 4 97 1 0 13 7 6 366 0 1 276 0 1 240 0 8 226 0 2 20 0 1 312 1 2 176 0 1 70 2 0 82 3 0 12 1 0 4 0 1 57 7 6 106 22 21 160 1 2 106 125 2 12 4 1 19 1 0 10 1 0 10 19 13 49 1 0 17 1 0 43 42 29 19 7 4 15 2 0 24 1 0 11 11 10 13 1 0 13 1 0 6 1 0 4 chain 46170 chr18 78077248 + 37024223 37024816 L1P2 5180 - 3289 3881 61749 439 7 6 147 chain 101944 chr18 78077248 + 37024816 37026120 L1P3 4156 + 2839 4139 36278 309 19 0 346 0 1 27 0 4 77 1 0 47 1 13 151 2 5 89 2 0 197 1 0 8 1 0 26 chain 53710 chr18 78077248 + 37027016 37027641 L1PA7 6471 + 5844 6465 56540 317 0 1 117 0 1 30 2 0 148 4 0 7 chain 16749 chr18 78077248 + 37078718 37078967 THE1B 368 - 14 368 136258 32 8 16 106 2 0 24 13 112 64 chain 12486 chr18 78077248 + 37137907 37138047 L1PA4 6152 + 5996 6136 150313 140 chain 554679 chr18 78077248 + 37145556 37151574 L1PA2 6032 + 1 6026 864 256 1 0 2573 0 2 305 0 2 2457 2 6 424 chain 2957 chr18 78077248 + 37189522 37189558 LTR40a 516 + 112 149 225939 9 0 1 27 chain 10211 chr18 78077248 + 37189561 37189741 MER30B 195 + 5 194 159564 18 10 11 17 27 35 108 chain 8144 chr18 78077248 + 37245941 37246085 MSTA 426 - 0 169 170264 28 15 20 57 9 29 35 chain 25026 chr18 78077248 + 37249819 37250117 AluY 311 + 5 311 104655 128 2 0 70 2 1 56 0 11 40 chain 16652 chr18 78077248 + 37274925 37275259 LTR49 580 + 6 343 136525 27 1 5 20 35 36 41 1 0 30 17 14 33 0 1 43 26 27 60 chain 3540 chr18 78077248 + 37278047 37278087 MLT2B3 573 + 533 573 214710 40 chain 29776 chr18 78077248 + 37295633 37295943 AluYg6 310 + 0 310 85563 310 chain 13151 chr18 78077248 + 37316250 37316589 L1PB1 5432 + 5116 5423 147641 22 1 0 4 3 2 13 22 16 47 26 24 37 1 0 15 1 0 4 23 12 14 3 1 5 1 0 14 2 0 24 1 0 16 6 5 13 1 0 13 1 0 6 chain 122043 chr18 78077248 + 37335893 37337609 L1PA11 4918 + 1312 3004 30370 34 22 20 56 0 3 139 27 28 193 0 6 24 3 0 381 2 0 7 0 2 6 1 0 29 5 1 230 36 19 57 11 2 368 6 7 56 0 1 23 chain 261958 chr18 78077248 + 37375437 37379104 MER61-int 3695 - 1 3695 15586 109 0 4 59 6 7 168 3 1 116 12 11 57 2 0 10 2 0 113 44 43 63 80 76 24 1 2 66 1 0 200 1 3 143 0 1 31 0 1 145 1 0 51 0 5 53 3 1 25 0 3 191 0 1 70 0 1 168 1 2 194 5 8 190 0 5 32 6 9 99 53 49 339 0 1 89 0 1 12 3 0 56 0 1 36 1 7 6 5 0 35 0 1 20 0 1 61 0 13 133 2 1 165 0 1 57 1 0 48 chain 33547 chr18 78077248 + 37397868 37398256 L1PA4 6152 + 5758 6152 78319 33 0 1 349 0 5 6 chain 5052 chr18 78077248 + 37428065 37428143 MADE1 96 + 0 94 194613 24 6 22 48 chain 162205 chr18 78077248 + 37439992 37441723 L1HS 6032 - 2 1733 23033 1731 chain 25938 chr18 78077248 + 37448361 37448669 AluY 311 + 2 310 100255 130 0 1 122 10 9 46 chain 12375 chr18 78077248 + 37500000 37500184 L1PA5 6144 - 72 255 150732 66 6 11 12 7 1 93 chain 547720 chr18 78077248 + 37504333 37510398 L1PA2 6032 + 0 6030 1738 257 1 0 318 18 0 165 0 2 1388 0 2 1288 0 1 770 0 1 445 22 0 1229 5 0 7 0 5 152 chain 10438 chr18 78077248 + 37535639 37535797 Tigger1 2417 - 2266 2417 158535 19 17 10 122 chain 23628 chr18 78077248 + 37536491 37536844 THE1A 353 + 0 351 112422 15 2 0 32 0 1 46 1 0 14 16 17 68 6 5 104 1 0 4 0 1 44 chain 5876 chr18 78077248 + 37538418 37538519 THE1A 353 + 0 96 186420 15 2 0 26 6 7 35 4 0 13 chain 16805 chr18 78077248 + 37538558 37538780 THE1A 353 + 134 353 136103 64 1 0 103 2 0 52 chain 26383 chr18 78077248 + 37650123 37650476 THE1C 375 + 0 350 98480 74 8 9 30 1 0 12 3 0 225 chain 538197 chr18 78077248 + 37694063 37700169 L1PA4 6152 - 16 6151 3122 230 0 1 596 0 4 906 0 2 561 1 0 241 0 20 3005 0 4 181 1 0 384 chain 49593 chr18 78077248 + 37737231 37737837 L1PA6 6164 - 2 605 59325 8 2 0 30 6 0 57 0 3 323 0 2 180 chain 12673 chr18 78077248 + 37747040 37747216 Tigger3b 1229 + 119 314 149562 101 8 27 67 chain 552696 chr18 78077248 + 37767603 37773621 L1PA2 6032 - 0 6030 1111 5260 0 12 758 chain 171855 chr18 78077248 + 37809792 37811738 L1PA5 6144 - 5 1957 21835 154 0 1 176 0 3 28 0 2 1588 chain 56323 chr18 78077248 + 37825541 37826269 LTR12 884 + 0 883 54953 90 0 132 132 0 22 333 1 0 67 8 10 97 chain 129685 chr18 78077248 + 37904386 37905815 L1PA3long 6157 - 15 1447 28159 316 0 3 1113 chain 16198 chr18 78077248 + 37905815 37905995 L1PA3long 6157 + 4520 4700 137014 180 chain 35964 chr18 78077248 + 37911463 37911895 L1PA6 6164 - 2 430 74938 6 4 0 422 chain 2769 chr18 78077248 + 37917383 37917436 MER20 218 - 125 180 229202 11 13 15 29 chain 115271 chr18 78077248 + 37943347 37944691 L1PA6 6164 - 2 1352 32692 6 7 0 59 1 0 68 0 8 697 3 9 503 chain 3125 chr18 78077248 + 37946671 37946736 MIR 256 - 161 226 222435 16 1 0 5 12 13 31 chain 28561 chr18 78077248 + 37950907 37951209 AluYg6 310 - 8 310 90917 302 chain 5352 chr18 78077248 + 37996553 37996631 MADE1 96 - 2 96 191515 44 1 17 33 chain 5039 chr18 78077248 + 38044207 38044289 L1PA17 2846 - 166 246 194740 23 8 7 18 1 0 32 chain 11430 chr18 78077248 + 38045560 38045787 L1MA5A 2387 - 81 273 154564 10 1 0 18 5 6 42 26 0 15 3 0 28 4 0 22 11 9 42 chain 115659 chr18 78077248 + 38091939 38093356 L1PA7 6471 - 5 1410 32572 83 1 2 27 13 0 732 6 5 144 1 2 410 chain 103481 chr18 78077248 + 38093356 38094617 L1PA7 6471 + 3761 5026 35769 74 0 1 421 0 1 415 0 2 351 chain 27256 chr18 78077248 + 38113771 38114103 L1PA5 6144 + 5812 6144 95412 169 0 5 7 1 0 5 4 0 146 chain 84974 chr18 78077248 + 38175994 38177039 MER11C 1089 - 26 1089 41523 325 0 1 45 0 4 133 8 9 160 1 0 65 0 4 60 0 9 248 chain 24621 chr18 78077248 + 38210913 38211172 AluYa5 310 + 45 304 106885 259 chain 3373 chr18 78077248 + 38215049 38215155 LTR12D 1347 - 570 862 217631 24 25 1 23 17 227 17 chain 22096 chr18 78077248 + 38277283 38277621 THE1C 375 + 0 335 119807 107 1 2 31 1 5 35 1 0 5 1 0 113 23 17 20 chain 91534 chr18 78077248 + 38282312 38283493 L1PA8 5853 + 4677 5853 39119 333 2 0 556 0 2 42 2 0 63 7 6 9 2 1 9 3 4 38 3 2 16 4 3 92 chain 79429 chr18 78077248 + 38308513 38309572 L1PA8 5853 - 0 1036 43858 13 23 5 75 2 1 18 2 1 51 1 0 10 2 1 12 0 8 94 1 0 305 9 0 167 2 0 58 11 12 12 2 0 23 0 4 166 chain 20951 chr18 78077248 + 38315402 38315642 L1PA5 6144 - 12 252 124102 240 chain 103799 chr18 78077248 + 38327936 38329295 L1PA8 5853 - 0 1344 35772 93 1 0 16 1 0 51 1 0 13 1 0 11 5 0 61 2 0 44 1 0 478 0 2 51 30 22 18 3 4 246 0 1 58 0 1 174 chain 20660 chr18 78077248 + 38346006 38346288 L1PA7 6471 - 6 274 125107 6 2 0 172 0 2 8 16 2 78 chain 19956 chr18 78077248 + 38371985 38372241 L1PA7 6471 - 6 260 127283 6 3 0 142 7 8 98 chain 48592 chr18 78077248 + 38373473 38374063 L1PA7 6471 - 4 592 60043 8 2 0 580 chain 135577 chr18 78077248 + 38374063 38376075 L1PA8 5853 + 3723 5679 26912 109 7 8 365 0 2 188 0 1 68 22 0 192 3 9 188 0 1 79 1 0 54 1 0 22 2 0 35 6 7 203 274 235 73 1 0 46 2 0 71 chain 102856 chr18 78077248 + 38393429 38394705 L1PA7 6471 - 5 1274 36037 324 0 6 274 0 3 238 29 9 48 4 0 6 0 4 306 0 4 47 chain 169454 chr18 78077248 + 38404069 38406241 L1PA8A 6298 + 4078 6291 22122 178 1 0 4 19 20 575 0 3 614 0 4 12 8 7 73 0 2 327 0 9 14 6 7 52 0 23 19 1 2 239 2 1 28 chain 2795 chr18 78077248 + 38423416 38423448 MLT1F1 559 + 495 527 228811 32 chain 318640 chr18 78077248 + 38424826 38428232 L1HS 6032 + 2619 6032 12644 247 0 7 3159 chain 20850 chr18 78077248 + 38471818 38472185 THE1C 375 + 0 364 124462 57 16 26 8 14 0 77 0 1 17 35 34 58 0 1 52 0 1 18 1 0 14 chain 28445 chr18 78077248 + 38505819 38506125 AluYa5 310 + 0 303 91397 132 3 0 171 chain 29810 chr18 78077248 + 38512520 38512834 AluYb8 318 - 4 318 85405 314 chain 10332 chr18 78077248 + 38525774 38525921 MER85 139 - 0 139 158971 92 13 5 42 chain 12622 chr18 78077248 + 38546466 38546805 L1PB1 5432 - 10 318 149761 21 1 0 9 1 0 22 1 0 16 81 64 9 1 0 45 6 5 10 2 1 52 16 10 14 10 8 22 chain 143461 chr18 78077248 + 38547525 38549480 L1PB1 5432 + 2468 4413 25566 32 3 0 50 0 1 171 8 8 13 0 1 75 8 0 4 1 0 184 9 0 7 0 1 41 6 5 332 3 0 221 0 1 74 6 11 27 2 5 24 0 1 12 0 1 183 0 3 6 7 5 196 0 1 57 3 2 190 chain 51459 chr18 78077248 + 38630629 38631282 PABL_A 660 + 3 658 57997 67 0 5 10 9 5 136 0 1 431 chain 66897 chr18 78077248 + 38659514 38660968 L1PB1 5432 - 9 1246 49685 5 1 0 14 1 0 13 1 0 21 1 0 24 67 59 6 1 0 44 1 0 16 2 1 24 192 3 25 2 0 9 5 1 12 5 4 4 1 0 17 20 18 86 0 2 5 2 0 107 15 13 88 32 40 6 0 1 50 19 0 74 0 2 58 21 22 51 13 13 25 12 18 58 1 0 4 2 3 17 1 2 53 1 0 119 chain 287861 chr18 78077248 + 38666429 38669821 L1P2 5180 + 1328 4722 14169 991 2 0 460 3 4 381 5 6 7 1 0 11 0 1 229 1 2 103 0 2 367 2 1 278 1 2 468 1 0 81 chain 16351 chr18 78077248 + 38688609 38688993 L1PB1 5432 - 12 364 137339 14 6 5 9 1 0 22 1 0 24 2 0 14 55 41 10 1 0 44 2 1 15 2 1 53 2 0 9 6 2 9 1 0 13 1 0 20 1 0 5 7 6 35 chain 39488 chr18 78077248 + 38749335 38749778 L1PA5 6144 + 5689 6131 70035 202 1 0 240 chain 18738 chr18 78077248 + 38751943 38752154 L1PA2 6032 - 5 216 130859 211 chain 76418 chr18 78077248 + 38763831 38764788 LTR5_Hs 974 + 0 961 45250 459 0 4 196 9 11 106 7 7 47 3 1 130 chain 117849 chr18 78077248 + 38804131 38805661 THE1A-int 1579 + 0 1579 31850 369 0 20 41 7 23 228 1 0 429 0 4 28 1 5 12 8 13 142 1 2 263 chain 37003 chr18 78077248 + 38817540 38818005 L1PA8A 6298 + 5801 6281 73508 282 0 14 82 1 2 100 chain 25248 chr18 78077248 + 38853051 38853356 AluY 311 + 4 311 103482 276 0 2 29 chain 34784 chr18 78077248 + 38890899 38891351 MER41A 554 - 0 532 76499 80 0 5 29 0 8 23 8 12 24 0 63 288 chain 27937 chr18 78077248 + 38907503 38907844 THE1B-int 1605 + 34 375 93214 341 chain 27826 chr18 78077248 + 38922794 38923085 AluYb8 318 + 18 309 93599 291 chain 36951 chr18 78077248 + 39067616 39068158 L1PA8 5853 - 0 537 73583 87 7 6 19 2 1 46 19 16 70 11 9 35 1 0 42 0 3 31 0 2 121 2 0 49 chain 35964 chr18 78077248 + 39116525 39116945 L1PA7 6471 - 51 470 74939 188 2 0 100 0 1 130 chain 17571 chr18 78077248 + 39141249 39141579 THE1D 372 + 18 332 134076 27 9 0 9 9 0 20 3 0 6 7 11 75 42 44 14 1 0 108 chain 28880 chr18 78077248 + 39187997 39188298 AluYb8 318 + 0 301 89541 301 chain 554262 chr18 78077248 + 39211706 39217733 L1PA2 6032 + 3 6028 915 310 2 0 42 0 1 971 2 1 4700 chain 5596 chr18 78077248 + 39287933 39287998 MER51A 677 - 410 475 189127 65 chain 13163 chr18 78077248 + 39299358 39299585 L1MB3 1562 + 1179 1425 147602 20 1 0 15 1 21 54 0 1 55 11 10 22 8 9 35 1 0 4 chain 5140 chr18 78077248 + 39302941 39302996 L1PA2 6032 + 5974 6029 193667 55 chain 16692 chr18 78077248 + 39305213 39305448 L1PA6 6164 - 2 239 136426 144 1 3 22 3 0 6 4 6 39 0 1 16 chain 16058 chr18 78077248 + 39309927 39310281 L1PB1 5432 - 5 327 138187 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 8 6 12 20 9 4 1 0 16 1 0 43 1 0 16 2 1 42 13 11 8 2 0 3 2 0 12 1 0 8 4 7 15 3 0 9 chain 564774 chr18 78077248 + 39354979 39361010 L1HS 6032 + 0 6031 217 898 1 0 1848 0 1 3284 chain 55769 chr18 78077248 + 39404736 39405575 L1PB2 3958 - 120 950 55264 66 0 19 21 0 2 48 2 1 63 1 0 66 8 7 49 0 1 43 4 0 14 3 1 64 33 15 49 2 0 161 12 10 130 chain 23621 chr18 78077248 + 39438665 39439012 THE1C 375 - 0 375 112466 124 50 78 173 chain 134812 chr18 78077248 + 39445539 39447088 LTR12C 1709 + 0 1709 27056 699 0 159 254 1 0 5 3 1 106 0 4 481 chain 25690 chr18 78077248 + 39602110 39602444 L1PA6 6164 - 4 342 101332 142 22 26 170 chain 10984 chr18 78077248 + 39631830 39631949 L1PA4 6152 + 6033 6152 156254 119 chain 28241 chr18 78077248 + 39634159 39634540 MLT2A1 477 - 92 477 92149 180 0 1 25 13 11 35 1 5 121 0 1 6 chain 13845 chr18 78077248 + 39642328 39642524 MER30 238 + 26 238 145082 85 4 0 6 2 21 84 1 2 14 chain 29801 chr18 78077248 + 39658059 39658373 AluYb8 318 + 0 314 85429 314 chain 17924 chr18 78077248 + 39684497 39684707 L1PA5 6144 + 5903 6137 133050 149 1 24 11 0 1 49 chain 67160 chr18 78077248 + 39703332 39704186 L1PA10 4194 + 3299 4150 49584 29 0 1 67 3 0 113 1 2 8 0 3 465 1 0 57 1 0 72 3 0 34 chain 23751 chr18 78077248 + 39710336 39710627 AluSc 308 - 6 297 111769 184 1 0 30 0 1 76 chain 23109 chr18 78077248 + 39721971 39722290 AluY 311 + 1 305 115097 36 8 0 95 7 8 66 9 1 98 chain 204012 chr18 78077248 + 39728308 39730640 L1PA5 6144 - 6 2329 18925 312 0 1 13 1 2 332 1 0 890 4 0 471 11 5 297 chain 35801 chr18 78077248 + 39769751 39770209 LTR22A 463 + 6 463 75131 127 8 7 323 chain 15768 chr18 78077248 + 39783605 39783947 THE1B 368 + 0 347 139060 106 31 32 39 61 66 63 26 25 16 chain 122980 chr18 78077248 + 39783968 39785522 THE1B-int 1605 + 0 1598 30054 428 1 26 709 1 13 168 0 5 74 0 1 16 0 1 157 chain 80700 chr18 78077248 + 39786186 39787102 L1PA4 6152 - 1 916 43307 96 1 0 51 2 0 6 6 8 754 chain 76828 chr18 78077248 + 39813802 39815080 L1PB1 5432 + 4126 5372 45070 89 9 4 158 14 15 111 7 8 24 0 2 42 0 5 25 2 10 9 33 0 237 11 7 24 0 23 83 1 0 81 22 24 7 3 0 24 8 6 12 7 3 9 2 0 51 1 0 13 5 4 45 1 0 15 24 12 16 5 3 5 1 0 14 2 0 26 chain 81734 chr18 78077248 + 39833710 39834912 L1PA13 3608 - 2193 3388 42878 251 0 8 99 5 4 6 2 0 415 2 0 54 0 1 45 1 0 6 54 51 12 6 2 16 2 0 18 1 0 14 1 0 5 10 13 104 8 6 65 chain 77364 chr18 78077248 + 39845638 39846496 L1PA3long 6157 - 0 863 44794 51 0 4 99 0 1 708 chain 29501 chr18 78077248 + 39853584 39853968 MLT2A1 477 + 2 385 86636 169 4 1 7 0 1 22 0 1 182 chain 24080 chr18 78077248 + 39864857 39865152 AluSc5 308 + 9 303 109872 55 2 0 214 0 1 24 chain 5343 chr18 78077248 + 39867272 39867339 MER58A 224 - 16 83 191620 67 chain 19709 chr18 78077248 + 39892965 39893301 THE1B 368 - 8 368 128068 104 43 54 4 1 0 6 0 1 17 1 0 4 5 4 102 5 20 44 chain 10183 chr18 78077248 + 39927163 39927292 L1PA5 6144 - 12 148 159702 106 2 9 21 chain 42929 chr18 78077248 + 39932114 39932642 L1PA6 6164 - 3 538 65505 335 5 3 83 0 3 96 0 6 9 chain 278000 chr18 78077248 + 40018936 40022105 L1PA5 6144 - 4 3178 14749 1518 1 0 277 0 4 407 0 1 430 0 1 300 0 1 43 1 0 192 chain 22284 chr18 78077248 + 40041805 40042193 LTR7B 505 + 0 505 118981 34 0 1 17 1 0 56 0 10 53 12 81 22 39 79 60 2 1 27 17 16 48 chain 32385 chr18 78077248 + 40045249 40045621 HERVH-int 3825 + 3453 3825 80214 372 chain 24814 chr18 78077248 + 40049286 40049704 LTR7B 505 + 0 495 105813 103 6 16 46 16 37 27 23 31 29 1 0 22 11 51 68 25 24 41 chain 67434 chr18 78077248 + 40080807 40081641 L1PA7 6471 + 5617 6469 49472 7 0 4 37 0 3 38 1 0 88 0 10 216 0 1 110 0 1 337 chain 6691 chr18 78077248 + 40083368 40083442 L1PA2 6032 + 5957 6031 179749 74 chain 8044 chr18 78077248 + 40098372 40098467 Tigger3c 601 + 451 546 170789 95 chain 7216 chr18 78077248 + 40116676 40116780 L1PB4 2604 + 2465 2568 175959 87 5 4 12 chain 18277 chr18 78077248 + 40118848 40119067 AluSp 311 - 30 253 132134 186 0 4 33 chain 183398 chr18 78077248 + 40121021 40123131 L1PA5 6144 - 0 2184 20642 347 0 1 39 0 5 729 15 16 512 0 4 34 0 62 31 0 1 403 chain 132998 chr18 78077248 + 40126692 40128236 L1PA6 6164 - 16 1568 27420 663 0 1 74 1 4 45 0 1 38 0 4 275 5 4 443 chain 30703 chr18 78077248 + 40132411 40132797 LTR7 482 - 6 425 83029 43 12 14 122 0 31 209 chain 239345 chr18 78077248 + 40134569 40137655 HERVH-int 3825 - 0 3825 16807 445 9 643 74 1 0 380 0 1 183 29 34 285 0 1 93 0 5 104 5 0 107 1 0 10 0 1 26 11 1 446 7 6 4 0 1 83 0 1 104 0 3 4 0 1 49 19 19 9 1 0 25 0 58 15 8 0 10 5 62 58 2 1 139 2 1 333 chain 35449 chr18 78077248 + 40137669 40138107 LTR7 482 - 12 482 75621 37 12 14 139 0 30 250 chain 62981 chr18 78077248 + 40152518 40153293 L1PA7 6471 + 5693 6466 51454 598 26 26 142 2 0 7 chain 8227 chr18 78077248 + 40178434 40178743 MLT1A0 366 + 6 342 169800 37 191 218 81 chain 3944 chr18 78077248 + 40209467 40209518 Tigger7 736 - 131 182 208220 51 chain 29798 chr18 78077248 + 40209524 40209839 AluYb8 318 - 3 318 85442 315 chain 32390 chr18 78077248 + 40217392 40217749 L1PA5 6144 + 5786 6143 80207 357 chain 546942 chr18 78077248 + 40240284 40246521 L1PA4 6152 + 1 6151 1838 579 1 0 253 85 0 1821 0 1 31 0 1 2607 4 0 709 0 1 147 chain 2554 chr18 78077248 + 40268216 40268260 LTR82A 830 + 25 68 232447 25 0 2 6 3 0 10 chain 19483 chr18 78077248 + 40293754 40293968 L1PA3long 6157 - 3028 3242 128711 214 chain 271693 chr18 78077248 + 40293968 40296981 L1PA3long 6157 + 3144 6155 15100 31 1 2 679 1 0 451 1 0 334 1 0 1514 chain 183853 chr18 78077248 + 40304370 40306746 L1PA8 5853 + 3476 5853 20605 169 0 1 542 0 2 23 10 6 82 0 1 73 1 2 354 3 4 270 0 1 4 2 0 60 18 17 464 8 11 38 10 8 8 7 0 25 0 3 34 15 13 49 2 1 19 4 11 82 chain 30221 chr18 78077248 + 40317010 40317398 LTR7 482 + 0 477 84130 67 0 48 120 0 31 48 0 10 153 chain 256517 chr18 78077248 + 40317405 40320652 HERVH-int 3825 + 0 3825 15905 386 0 1 28 13 381 230 0 3 96 0 4 100 16 1 72 3 5 124 9 0 27 0 2 10 1 0 300 29 31 271 24 29 49 0 1 257 0 1 5 5 4 414 0 1 214 32 34 39 8 218 260 0 2 225 chain 30552 chr18 78077248 + 40321909 40322310 LTR7 482 + 0 482 83337 69 8 46 120 0 31 48 0 10 62 0 2 94 chain 35140 chr18 78077248 + 40323766 40324265 LTR7 482 + 0 482 76007 157 51 0 73 0 31 104 1 2 52 12 14 49 chain 4392 chr18 78077248 + 40339022 40339089 MLT2B1 522 + 441 514 202054 27 3 9 37 chain 120666 chr18 78077248 + 40346063 40347638 THE1A-int 1579 + 0 1579 30812 487 1 3 7 1 0 79 1 0 87 26 27 61 0 1 178 5 6 427 0 1 215 chain 19752 chr18 78077248 + 40367062 40367285 L1PA5 6144 - 116 339 127952 223 chain 9591 chr18 78077248 + 40367285 40367403 L1PA5 6144 + 6028 6144 162636 104 3 1 11 chain 116482 chr18 78077248 + 40375030 40376440 LTR12C 1709 + 0 1709 32285 259 6 22 207 0 1 82 0 2 88 0 278 173 1 0 4 4 2 34 0 1 26 20 20 25 0 4 481 chain 35623 chr18 78077248 + 40522892 40523410 LTR12F 595 - 0 595 75381 166 0 1 210 51 50 23 5 82 63 chain 34980 chr18 78077248 + 40544223 40544749 PRIMA4_LTR 623 + 28 613 76212 156 0 1 3 5 0 69 31 30 45 0 59 10 3 0 30 1 0 6 10 12 57 0 1 84 0 6 16 chain 25612 chr18 78077248 + 40571461 40571910 LTR7 482 + 0 470 101665 50 49 36 15 15 14 109 8 40 101 1 2 52 12 14 37 chain 262532 chr18 78077248 + 40571936 40575112 HERVH-int 3825 + 652 3824 15560 45 1 0 91 3 7 43 2 0 295 0 4 129 6 3 163 11 1 139 5 0 113 4 31 686 15 16 598 1 0 658 23 5 145 chain 42315 chr18 78077248 + 40648851 40649401 MER41C 542 + 2 542 66251 226 6 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23769 chr18 78077248 + 40744086 40744440 THE1B 368 - 0 368 111657 191 16 15 80 23 38 44 chain 23361 chr18 78077248 + 40755815 40756087 L1PA3long 6157 - 0 275 113866 12 1 4 259 chain 17750 chr18 78077248 + 40784010 40784206 L1PA3long 6157 - 0 196 133567 196 chain 44180 chr18 78077248 + 40786717 40787210 L1PA3long 6157 - 0 495 63972 147 0 1 13 0 1 333 chain 134487 chr18 78077248 + 40803677 40806017 L1PB1 5432 - 28 2028 27113 13 1 0 21 1 0 24 2 0 14 44 31 5 3 0 15 1 0 44 1 0 16 2 1 53 2 0 9 26 20 24 1 0 8 7 6 115 8 9 47 0 3 120 9 2 168 5 10 748 1 0 151 1 0 29 0 1 4 0 12 72 313 0 39 1 0 4 60 41 66 18 31 24 chain 52242 chr18 78077248 + 40806021 40806736 L1PB 1623 + 411 1131 57467 76 1 0 180 0 3 101 0 1 4 65 66 138 0 1 150 chain 4752 chr18 78077248 + 40809764 40809838 MADE1 96 + 6 95 197892 36 1 17 21 1 0 15 chain 27453 chr18 78077248 + 40811966 40812548 L1PB1 5432 + 4888 5404 94804 45 1 0 59 27 28 83 49 11 20 1 0 13 16 11 11 2 0 22 0 1 28 2 1 16 1 0 44 1 0 13 28 17 16 8 5 14 2 0 24 7 6 15 1 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105 4 3 189 8 2 37 2 1 144 3 0 495 0 7 245 1 0 88 0 12 31 15 14 325 chain 14821 chr18 78077248 + 40917628 40918018 L1PB 1623 + 411 794 65122 73 1 0 106 6 1 37 1 0 166 chain 43979 chr18 78077248 + 40918023 40918588 LTR19B 566 - 0 566 64230 96 22 23 276 7 8 48 1 0 115 chain 6764 chr18 78077248 + 40918588 40918766 L1PB 1623 + 794 971 65122 92 2 1 84 chain 18801 chr18 78077248 + 40925705 40925977 AluY 311 + 29 304 130674 103 18 19 122 5 7 24 chain 6762 chr18 78077248 + 40958485 40958773 L1MA9 1812 - 248 484 179233 22 100 87 25 21 25 14 42 0 47 1 0 16 chain 48565 chr18 78077248 + 40974868 40975419 L1PA5 6144 + 5592 6143 60062 551 chain 32592 chr18 78077248 + 40977671 40978411 MLT2A1 477 - 0 477 79864 55 298 38 207 13 11 106 1 0 60 chain 4500 chr18 78077248 + 40977817 40977870 HERVL-int 5654 - 29 82 200784 53 chain 437068 chr18 78077248 + 40978411 40983959 HERVL-int 5654 - 0 5654 9123 25 6 5 391 8 9 242 4 8 522 0 7 257 1 2 184 1 0 34 0 2 823 4 0 441 20 17 206 0 1 296 4 99 29 0 1 23 1 0 90 1 2 213 2 1 34 0 12 27 16 6 525 1 2 34 0 1 303 3 0 104 0 1 254 0 2 349 9 9 61 chain 33594 chr18 78077248 + 40984120 40984549 MLT2A1 477 - 54 477 78250 38 4 0 215 6 3 96 0 1 70 chain 75931 chr18 78077248 + 41028798 41029692 L1PA6 6164 + 5266 6162 45524 48 1 5 837 2 0 6 chain 88057 chr18 78077248 + 41031548 41032491 L1HS 6032 + 5087 6030 40351 943 chain 8298 chr18 78077248 + 41059057 41059160 LTR32 486 + 369 472 169410 103 chain 441974 chr18 78077248 + 41074417 41080047 HERVL-int 5654 + 3 5654 8998 245 0 2 40 16 16 135 1 3 119 5 1 20 0 6 1147 0 4 59 1 2 351 1 0 178 9 8 361 1 2 103 0 1 766 1 0 32 0 1 487 10 11 390 0 1 515 0 6 209 6 7 139 0 1 283 chain 17919 chr18 78077248 + 41098601 41098968 THE1D 372 + 0 370 133060 90 131 134 132 1 0 4 0 1 9 chain 21297 chr18 78077248 + 41109451 41109734 AluSc5 308 - 24 308 122872 19 0 1 87 0 1 25 16 16 82 2 1 52 chain 24116 chr18 78077248 + 41118826 41119124 L1PA7 6471 - 12 319 109659 160 3 12 135 chain 96099 chr18 78077248 + 41125083 41126146 L1PA3long 6157 - 845 1909 37793 671 1 2 391 chain 77223 chr18 78077248 + 41126146 41127004 L1PA3long 6157 + 5299 6157 44700 858 chain 28245 chr18 78077248 + 41166699 41167003 AluYb9 318 + 8 309 92135 124 3 0 177 chain 32914 chr18 78077248 + 41171254 41171740 MER75 514 + 32 514 79348 54 12 4 16 1 0 168 21 24 74 1 2 122 1 2 16 chain 4700 chr18 78077248 + 41181335 41181390 Tigger4b 360 - 283 338 198541 55 chain 99182 chr18 78077248 + 41192283 41193575 L1PA8 5853 - 11 1308 36978 82 1 0 19 2 1 52 1 0 9 2 1 69 2 0 28 1 2 15 1 0 235 13 23 110 3 0 6 0 4 92 0 1 83 2 0 75 0 1 389 chain 95798 chr18 78077248 + 41196239 41197308 L1PA5 6144 - 1234 2302 37876 282 1 0 786 chain 91145 chr18 78077248 + 41197308 41198367 L1PA5 6144 + 5064 6137 39136 202 1 6 240 0 1 323 0 8 293 chain 23756 chr18 78077248 + 41200116 41200405 AluSq10 312 - 24 312 111737 160 6 5 123 chain 205043 chr18 78077248 + 41223984 41226329 L1PA5 6144 + 3785 6144 18854 257 1 0 95 0 1 350 1 0 44 0 6 90 1 0 51 0 4 129 0 1 90 6 3 97 0 5 309 0 3 824 chain 115057 chr18 78077248 + 41233643 41235275 L1PA8 5853 + 4166 5815 32770 174 1 0 71 4 5 173 0 19 71 0 1 27 0 1 296 31 35 45 14 16 333 0 1 63 5 0 67 1 0 44 2 0 44 0 3 27 1 0 11 1 0 47 2 1 19 3 2 21 14 12 20 chain 22006 chr18 78077248 + 41235500 41235869 MLT2A2 560 - 80 560 120205 17 0 5 42 5 114 63 47 46 15 11 9 169 chain 55684 chr18 78077248 + 41262393 41263043 LTR6A 649 - 0 649 55317 217 1 0 432 chain 3449 chr18 78077248 + 41325695 41325735 MLT2B4 540 + 431 471 216229 40 chain 51102 chr18 78077248 + 41330088 41330652 L1PA4 6152 - 188 754 58248 7 0 1 342 0 1 215 chain 13084 chr18 78077248 + 41330653 41330809 L1PA4 6152 + 5989 6151 147905 12 0 1 130 0 5 14 chain 82796 chr18 78077248 + 41348335 41349455 L1PA11 4918 + 1735 2847 42420 75 11 8 203 0 1 71 12 6 135 7 0 46 3 6 9 0 3 262 6 7 280 chain 36033 chr18 78077248 + 41367453 41368002 MLT2A2 560 - 0 560 74859 8 0 4 50 12 0 7 0 1 16 64 82 392 chain 19310 chr18 78077248 + 41400368 41400605 L1PB1 5432 - 1056 1292 129216 112 1 0 124 chain 50928 chr18 78077248 + 41400605 41401270 L1PB1 5432 + 4429 5098 58352 170 3 2 19 3 4 54 0 1 110 0 2 15 0 1 291 chain 502321 chr18 78077248 + 41415464 41421579 L1PA6 6164 + 0 6150 6709 203 0 1 31 0 2 150 26 18 64 2 4 44 0 2 48 1 0 172 25 26 22 0 17 124 0 4 104 0 1 415 1 0 419 16 21 212 9 13 208 5 0 185 0 1 372 0 1 305 0 1 27 0 1 312 8 6 167 0 1 43 0 1 204 0 1 217 0 1 156 0 1 44 0 2 273 1 0 26 1 0 440 0 1 4 1 0 4 0 1 140 1 0 55 0 4 828 chain 75445 chr18 78077248 + 41429302 41430282 L1PA8 5853 - 0 981 45795 93 1 0 19 2 1 39 0 2 11 2 1 10 1 0 69 2 0 44 1 0 478 0 2 72 4 2 114 0 3 13 0 3 5 chain 10866 chr18 78077248 + 41438332 41438453 L1PA2 6032 + 5910 6031 156711 121 chain 170655 chr18 78077248 + 41451256 41453131 L1PA3long 6157 + 4281 6157 21971 4 0 1 1871 chain 78027 chr18 78077248 + 41470418 41471319 L1PA5 6144 + 5245 6144 44497 49 3 0 516 1 2 332 chain 218304 chr18 78077248 + 41488619 41491107 L1PA4 6152 - 17 2519 17986 101 2 1 674 0 3 48 0 4 800 2 9 755 0 1 56 0 1 11 1 0 38 chain 16973 chr18 78077248 + 41498055 41498234 L1HS 6032 - 547 726 135657 179 chain 36322 chr18 78077248 + 41498234 41498620 L1HS 6032 + 5644 6030 74473 386 chain 9571 chr18 78077248 + 41506747 41506947 MSTB 430 + 208 407 162730 8 1 0 49 52 0 8 7 59 75 chain 20288 chr18 78077248 + 41518012 41518234 AluYb8 318 + 98 317 126260 34 3 0 185 chain 9024 chr18 78077248 + 41520280 41520476 MLT1D 503 - 31 211 165472 25 69 54 39 1 0 62 chain 510151 chr18 78077248 + 41563954 41570143 L1PA6 6164 + 0 6157 6150 497 14 13 278 34 0 191 6 0 280 9 10 183 1 0 78 0 1 197 1 0 606 1 0 855 0 1 37 0 1 474 0 2 66 0 1 599 0 4 274 4 5 303 0 1 600 0 1 460 0 1 102 4 1 35 chain 78887 chr18 78077248 + 41571175 41572161 L1PA7 6471 - 7 1005 44116 5 2 0 532 0 1 149 1 5 67 17 19 54 1 7 19 1 2 138 chain 4200 chr18 78077248 + 41594728 41594781 L1MC4 1079 - 817 870 204532 53 chain 9213 chr18 78077248 + 41597417 41597571 L1PA17 2846 - 153 302 164493 43 1 0 18 1 0 32 19 16 40 chain 45548 chr18 78077248 + 41600656 41601233 L1PA5 6144 - 0 577 62458 45 0 1 123 1 2 88 9 8 72 1 0 238 chain 312681 chr18 78077248 + 41601244 41604791 L1HS 6032 - 2461 6032 12905 371 0 5 553 0 1 283 0 9 625 0 5 323 7 8 815 1 5 312 15 14 242 chain 25737 chr18 78077248 + 41614826 41615138 AluY 311 + 0 308 101131 72 3 0 61 1 0 175 chain 6890 chr18 78077248 + 41653202 41653300 Tigger1 2417 + 54 151 178279 49 9 8 40 chain 16396 chr18 78077248 + 41671225 41671410 L1PA5 6144 - 4 189 137218 185 chain 8149 chr18 78077248 + 41672442 41672641 L1PB1 5432 + 5237 5422 170237 28 0 1 13 0 3 14 1 0 4 1 0 4 21 13 9 3 1 5 1 0 12 2 0 26 1 0 13 13 12 9 1 0 18 chain 51938 chr18 78077248 + 41674740 41675433 LTR30 714 + 5 714 57655 248 0 5 185 7 18 137 0 2 31 7 4 11 16 18 28 1 0 22 chain 21924 chr18 78077248 + 41686561 41686822 L1PA7 6471 + 6207 6468 120528 261 chain 5814 chr18 78077248 + 41698924 41698993 MER41A 554 + 399 468 187005 69 chain 7000 chr18 78077248 + 41715268 41715354 MER41B 635 + 0 86 177461 86 chain 304675 chr18 78077248 + 41740781 41744508 L1PA6 6164 - 2 3773 13219 4 1 0 5 3 0 116 1 4 207 1 0 453 0 3 55 0 1 575 0 6 78 1 7 280 1 9 178 1 2 163 0 3 118 2 1 622 0 13 17 0 4 58 3 0 222 0 1 505 0 4 57 chain 8855 chr18 78077248 + 41798703 41798845 Tigger3 1187 - 114 247 166353 84 0 1 10 1 0 6 16 6 5 0 1 20 chain 3371 chr18 78077248 + 41800797 41800834 MLT2B1 522 + 485 522 217660 37 chain 155549 chr18 78077248 + 41804135 41806660 L1PA11 4918 - 340 2563 23916 11 2 0 13 1 0 15 13 9 10 21 12 20 1 0 13 2 0 66 20 21 5 1 0 14 12 19 22 5 1 84 0 20 216 3 4 235 0 30 19 26 25 4 0 1 22 2 1 472 0 2 199 335 0 273 1 0 176 1 0 28 0 1 155 2 0 5 chain 9124 chr18 78077248 + 41820351 41820503 MER30 238 - 43 238 164949 37 26 51 72 0 18 17 chain 478664 chr18 78077248 + 41830249 41836396 L1PA6 6164 - 5 6164 7777 220 16 19 91 2 1 63 0 10 433 0 4 140 0 3 276 0 1 189 2 4 336 0 4 63 0 2 153 0 10 168 2 1 62 1 0 10 0 1 372 1 0 14 1 5 203 0 1 109 8 8 47 6 5 99 0 1 482 0 3 121 1 2 89 27 0 94 10 11 275 1 0 45 6 5 58 0 3 46 0 1 499 0 3 108 0 1 278 0 4 84 0 17 114 1 0 121 1 0 117 19 0 173 11 7 74 14 5 191 chain 13027 chr18 78077248 + 41843334 41843522 Tigger3a 397 - 65 258 148152 55 12 13 81 0 4 40 chain 14605 chr18 78077248 + 41848726 41849340 L1MA6 2487 + 1860 2404 142564 16 26 25 19 11 10 48 1 0 19 28 29 7 2 0 33 1 0 3 2 0 37 6 3 27 1 0 8 263 208 27 3 0 18 1 0 7 chain 3953 chr18 78077248 + 41851715 41851761 MER5A 189 - 132 178 208094 46 chain 274334 chr18 78077248 + 41855356 41858383 L1PA3long 6157 + 3135 6157 14962 1013 2 0 1967 3 0 42 chain 505579 chr18 78077248 + 41879863 41885953 L1PA5 6144 + 2 6130 6491 44 7 10 64 0 14 618 5 12 181 2 1 67 1 0 144 21 12 93 6 7 162 0 2 13 0 4 143 0 1 176 1 3 420 0 4 235 0 1 375 2 3 340 1 0 13 1 0 16 1 5 128 0 1 159 6 0 7 0 1 27 0 2 603 0 1 121 0 3 9 0 1 1045 1 5 528 0 1 174 2 1 128 chain 132893 chr18 78077248 + 41891246 41892729 L1PA4 6152 - 9 1493 27446 280 0 1 1203 chain 122131 chr18 78077248 + 41909242 41910619 L1PA4 6152 + 4766 6143 30334 81 1 2 39 1 0 416 0 4 533 4 0 302 chain 22232 chr18 78077248 + 41920956 41921246 L1PB 1623 + 668 957 119198 140 2 0 90 0 1 58 chain 435975 chr18 78077248 + 41929352 41937194 L1PA7 6471 - 2 6060 9165 10 2 0 187 3 5 404 1 4 100 0 1 134 1 5 394 2013 0 145 7 3 246 0 1 332 41 46 382 0 1 127 8 9 92 3 1 4 0 1 229 1 0 30 0 4 31 3 4 36 1 0 81 0 200 6 0 7 148 14 1 165 0 4 257 3 1 384 0 1 195 0 2 260 0 2 13 1 5 217 0 1 188 0 1 6 79 78 334 57 58 128 5 4 22 1 10 311 chain 175074 chr18 78077248 + 41930603 41932565 L1PA3long 6157 + 4190 6157 21451 452 0 1 471 1 0 45 0 5 993 chain 468643 chr18 78077248 + 41938976 41947332 L1PA7 6471 - 48 6470 8087 104 3 0 102 1 0 199 30 12 13 0 3 179 8 12 170 0 7 389 0 3 110 2043 10 57 0 1 11 0 2 36 0 44 282 0 8 143 0 1 18 6 9 181 8 0 14 52 5 87 0 2 68 1 0 450 6 10 121 7 11 52 1 0 409 25 9 218 0 1 29 9 32 91 0 1 55 19 14 115 0 3 11 1 3 521 0 1 210 5 4 17 1 0 287 0 8 68 0 3 38 0 1 134 0 4 40 2 1 10 4 11 8 0 22 330 1 2 126 0 1 33 7 6 15 20 16 212 16 15 40 3 2 73 0 1 19 0 1 28 1 2 143 0 42 10 chain 11141 chr18 78077248 + 41949747 41949894 L1PA8 5853 - 6 151 155668 87 1 0 19 2 1 38 chain 412506 chr18 78077248 + 41955113 41961145 L1PA8 5853 + 50 5846 9732 20 3 1 11 1 0 11 50 15 118 25 25 23 53 34 272 8 20 284 3 0 111 0 8 50 28 26 51 10 6 10 11 4 6 0 1 29 0 1 4 0 2 44 0 1 42 0 3 95 9 11 91 5 6 63 8 7 91 1 0 238 7 3 123 0 4 22 1 0 181 0 2 62 0 7 65 1 0 131 0 4 106 21 16 272 312 32 18 4 8 273 1 0 171 2 0 63 0 1 43 0 9 141 0 1 196 29 33 88 1 0 14 0 17 102 5 14 130 0 1 131 0 1 14 5 0 244 0 1 33 1 0 50 0 13 63 0 1 106 1 0 90 1 23 69 0 1 16 8 10 88 4 5 224 0 2 97 0 1 43 1 0 15 0 4 25 2 0 10 20 24 24 0 1 15 1 0 9 1 0 47 4 3 19 1 0 86 chain 211022 chr18 78077248 + 41992654 41995430 L1PA8A 6298 + 3462 6287 18430 4 0 1 22 3 4 141 23 24 219 1 8 218 1 0 184 0 2 103 6 8 96 0 1 144 0 6 178 1 0 488 0 1 176 0 5 9 0 1 248 0 1 35 0 12 28 0 1 131 6 9 6 2 0 215 5 13 83 chain 323833 chr18 78077248 + 41995889 41999981 L1P3 4156 + 1 4107 12447 43 0 1 208 1 0 66 2 1 90 1 0 167 0 1 78 0 1 218 15 16 668 0 1 328 0 1 57 0 1 69 0 1 176 1 2 25 0 1 407 3 2 51 1 2 301 1 2 107 0 4 137 3 4 30 0 1 64 1 0 161 1 0 83 0 2 528 chain 191330 chr18 78077248 + 42000000 42002348 L1PA7 6471 + 4129 6470 19929 128 1 2 596 0 1 92 6 1 207 0 1 155 0 1 86 5 6 92 14 1 126 0 5 69 0 2 766 1 0 4 chain 3671 chr18 78077248 + 42003521 42003561 L1PA8 5853 + 5773 5813 212356 40 chain 3302 chr18 78077248 + 42003561 42003598 L1PA8 5853 + 5814 5851 218931 37 chain 306691 chr18 78077248 + 42010854 42014786 L1PA6 6164 - 5 3991 13142 153 3 4 429 2 7 231 5 3 10 0 8 69 4 24 123 5 6 88 3 7 337 14 11 6 0 2 80 17 18 167 12 20 248 0 2 29 0 1 740 0 1 18 1 2 5 1 0 42 0 4 74 0 1 789 21 16 4 0 1 46 1 2 65 2 1 44 0 4 44 chain 298968 chr18 78077248 + 42024747 42028124 L1PA5 6144 + 2760 6138 13478 490 0 1 2171 0 1 388 2 1 326 chain 23964 chr18 78077248 + 42072513 42072879 THE1B 368 + 0 368 110546 15 2 0 25 1 6 82 1 4 40 2 1 29 19 17 75 1 0 74 chain 28579 chr18 78077248 + 42078920 42079226 AluYa5 310 - 4 310 90828 306 chain 40230 chr18 78077248 + 42103242 42103697 L1PA5 6144 + 5684 6139 68983 455 chain 7306 chr18 78077248 + 42136627 42136709 L1PA8 5853 + 5771 5853 175396 82 chain 8685 chr18 78077248 + 42143815 42144124 MLT1C 463 + 153 455 167276 10 0 3 28 24 0 31 0 5 17 0 1 6 149 157 44 chain 128568 chr18 78077248 + 42160515 42162003 LTR12C 1709 + 0 1709 28430 837 1 0 43 0 119 112 1 0 6 2 0 107 0 4 168 0 102 211 chain 9455 chr18 78077248 + 42198920 42199056 L1PA7 6471 - 3 142 163289 10 0 2 52 6 7 68 chain 3752 chr18 78077248 + 42207513 42207657 MER5B 177 + 4 148 211106 43 81 82 6 1 0 13 chain 9215 chr18 78077248 + 42302971 42303100 MER85 139 - 0 139 164484 22 0 8 8 3 5 96 chain 29634 chr18 78077248 + 42367537 42367850 AluYb9 318 + 0 313 86116 313 chain 40659 chr18 78077248 + 42380779 42381254 L1PA5 6144 + 5668 6143 68352 39 2 1 422 2 3 10 chain 3696 chr18 78077248 + 42415440 42415567 MER53 195 + 13 195 211990 22 60 114 16 2 3 27 chain 2784 chr18 78077248 + 42457161 42457191 MER5C1 258 + 94 124 228963 30 chain 522711 chr18 78077248 + 42507909 42514030 L1PA5 6144 - 12 6144 4892 174 4 5 968 4 0 1781 0 2 6 6 3 23 1 0 1249 5 6 488 2 0 124 10 6 4 0 1 123 15 6 278 0 1 353 0 4 8 5 1 12 0 1 74 0 1 262 3 15 18 1 15 120 chain 28576 chr18 78077248 + 42517135 42517441 AluYa5 310 + 0 303 90838 132 3 0 171 chain 12223 chr18 78077248 + 42524962 42525110 L1PA5 6144 - 0 144 151325 6 3 0 12 1 0 126 chain 220226 chr18 78077248 + 42550838 42553345 L1PA4 6152 - 0 2504 17869 6 0 5 83 1 0 57 7 0 1002 0 1 1316 1 0 34 chain 25064 chr18 78077248 + 42569597 42569862 AluYa5 310 + 45 310 104488 265 chain 5230 chr18 78077248 + 42575593 42575836 MSTD 398 - 46 296 192720 27 7 8 30 149 155 30 chain 285434 chr18 78077248 + 42607978 42611104 L1PA3long 6157 - 0 3129 14327 147 0 1 1518 0 2 1461 chain 30245 chr18 78077248 + 42628655 42628971 AluYb8 318 + 0 316 84069 316 chain 84270 chr18 78077248 + 42660153 42661053 L1HS 6032 - 2 902 41791 900 chain 4327 chr18 78077248 + 42668065 42668116 MER89 557 + 2 53 202864 51 chain 32941 chr18 78077248 + 42683139 42683601 LTR2 463 - 0 461 79305 24 1 0 28 1 0 13 16 17 134 6 0 64 1 5 46 0 4 68 2 0 58 chain 64568 chr18 78077248 + 42707851 42708646 L1PA7 6471 - 19 825 50769 262 1 5 373 0 3 119 4 5 20 0 3 16 chain 6013 chr18 78077248 + 42727764 42727877 L1PA15 4387 - 1181 1292 185110 36 23 22 42 1 0 11 chain 14229 chr18 78077248 + 42732124 42732445 L1PB1 5432 - 10 316 143796 18 15 13 21 1 0 23 3 1 14 1 0 5 2 0 31 2 0 16 1 0 8 0 7 26 22 19 42 12 10 9 2 0 3 2 0 10 1 0 8 1 0 22 chain 15817 chr18 78077248 + 42744860 42745099 L1PA7 6471 - 5 242 138905 7 2 0 137 27 26 15 3 4 48 chain 3819 chr18 78077248 + 42781376 42781464 L1MC3 1789 - 420 517 210099 35 32 41 21 chain 93064 chr18 78077248 + 42804859 42805902 L1PA5 6144 - 902 1948 38640 794 0 3 249 chain 75294 chr18 78077248 + 42805902 42806769 L1PA5 6144 + 5251 6126 45689 165 0 1 564 1 4 101 1 5 35 chain 4163 chr18 78077248 + 42820514 42820563 MIR 256 - 111 160 205051 49 chain 14807 chr18 78077248 + 42831009 42831329 L1PB1 5432 - 5 295 141916 4 1 0 14 8 5 9 0 3 22 1 0 13 7 0 6 0 5 15 1 0 4 2 0 19 25 12 16 1 0 43 1 0 16 2 1 52 4 2 7 2 0 3 2 0 10 1 0 9 chain 32346 chr18 78077248 + 42840997 42841363 L1PA4 6152 - 18 384 80277 366 chain 67652 chr18 78077248 + 42841372 42842128 L1PA3long 6157 - 0 754 49387 5 3 0 333 0 1 415 chain 39817 chr18 78077248 + 42851479 42852055 L1MA1 4479 + 3239 3809 69598 12 1 0 5 11 7 26 0 5 21 0 2 72 3 0 131 1 0 195 44 40 54 chain 4516 chr18 78077248 + 42870749 42870807 MER33 330 + 252 318 200605 40 0 8 18 chain 3462 chr18 78077248 + 42893657 42893695 MIR 256 + 184 222 215944 38 chain 3254 chr18 78077248 + 42919762 42919801 MER94 134 - 1 40 219914 39 chain 26883 chr18 78077248 + 42932840 42933197 MER57A1 433 - 72 433 96696 48 5 1 28 0 4 263 0 4 13 chain 18698 chr18 78077248 + 42961922 42962225 LTR32 486 - 189 486 130954 118 24 25 29 11 12 32 9 0 10 0 1 70 chain 95857 chr18 78077248 + 42970904 42971981 L1PA4 6152 - 9 1090 37857 225 0 4 852 chain 12509 chr18 78077248 + 42974806 42975158 L1MB1 2102 + 1621 1907 150208 46 9 10 5 1 0 17 1 0 10 10 11 18 1 0 5 14 12 18 86 24 75 10 9 26 chain 8743 chr18 78077248 + 42985450 42985579 Tigger1 2417 - 86 214 166958 28 5 6 48 2 0 46 chain 3455 chr18 78077248 + 43030712 43030769 LTR16C 481 - 0 55 216109 36 5 3 16 chain 42278 chr18 78077248 + 43035083 43035601 L1PA7 6471 + 5933 6453 66298 266 0 1 217 14 15 21 chain 540342 chr18 78077248 + 43051847 43058408 L1PA7 6471 - 4 6471 2764 338 0 1 295 0 1 209 3 0 7 1 0 5 0 3 740 4 5 48 2 0 337 0 1 332 1 2 1039 1 5 33 7 10 91 0 9 92 2 7 90 0 2 4 125 0 120 0 2 1243 0 3 983 1 2 408 chain 289643 chr18 78077248 + 43110665 43113857 L1PA4 6152 - 0 3196 14041 1794 0 4 1398 chain 93283 chr18 78077248 + 43193326 43194759 THE1D-int 1627 + 0 1451 38570 104 17 13 402 4 5 51 10 14 56 25 26 24 34 38 29 0 15 160 8 9 192 85 83 142 0 1 52 3 0 35 chain 20698 chr18 78077248 + 43195244 43195633 THE1D 372 + 0 367 124974 54 36 27 94 1 0 6 34 35 9 4 0 79 21 12 51 chain 38978 chr18 78077248 + 43224833 43225344 L1PA8 5853 - 6 536 70768 87 1 0 19 2 1 52 6 4 76 2 0 44 1 0 43 0 1 63 0 25 115 chain 17954 chr18 78077248 + 43228914 43229162 AluY 311 + 60 306 132974 75 0 1 93 4 0 11 0 1 16 3 7 7 4 0 35 chain 8569 chr18 78077248 + 43243103 43243238 MER5A1 166 - 43 165 167920 77 4 0 23 9 0 22 chain 29182 chr18 78077248 + 43261017 43261328 AluYa5 310 - 0 310 88140 217 1 0 93 chain 4646 chr18 78077248 + 43264957 43265010 MER63A 208 + 71 124 199114 53 chain 536458 chr18 78077248 + 43274440 43280552 L1PA4 6152 + 7 6143 3383 861 0 2 199 0 3 347 0 1 900 1 0 225 0 1 1142 0 1 50 0 1 522 0 3 369 0 1 241 0 2 607 0 10 245 0 1 157 2 1 244 chain 18427 chr18 78077248 + 43282318 43282729 MSTA 426 - 0 426 131700 64 3 2 43 104 114 47 8 12 13 1 0 8 6 10 9 0 1 58 8 6 39 chain 3681 chr18 78077248 + 43314446 43314558 L1MB3 1562 + 1441 1551 212207 26 19 18 22 28 27 17 chain 23937 chr18 78077248 + 43322306 43322614 AluSc5 308 - 0 300 110711 10 2 0 23 0 2 30 8 0 235 chain 79663 chr18 78077248 + 43337498 43338546 MER11C 1089 - 26 1089 43750 25 0 1 57 3 2 64 1 0 48 0 1 127 0 1 38 1 0 4 1 5 112 16 15 177 1 0 65 0 4 62 4 13 242 chain 24612 chr18 78077248 + 43339092 43339502 PRIMA4_LTR 623 + 214 623 106930 14 0 1 69 18 59 13 4 5 13 47 0 37 0 4 5 1 0 189 chain 11022 chr18 78077248 + 43351173 43351349 THE1B 368 - 185 365 156121 5 0 2 38 25 27 108 chain 60910 chr18 78077248 + 43371602 43372324 L1PA6 6164 + 5442 6159 52380 116 0 1 439 14 8 153 chain 546950 chr18 78077248 + 43374040 43380174 L1PA4 6152 - 0 6152 1836 8 1 0 27 0 10 2113 0 3 50 0 1 2878 6 8 913 0 3 138 chain 278391 chr18 78077248 + 43386305 43390380 L1PBa1 4058 + 10 4040 14731 22 15 5 10 4 2 7 1 0 84 7 18 51 33 19 29 33 16 64 16 15 39 5 6 27 13 14 123 20 17 32 20 20 16 24 12 446 1 0 231 1 0 106 9 13 6 1 0 207 1 0 145 0 1 60 0 1 159 0 1 243 0 2 19 0 4 92 10 7 43 0 1 42 5 6 108 0 1 121 0 12 26 1 0 4 0 1 5 0 2 108 0 3 99 10 12 440 1 0 205 0 4 21 1 0 7 1 0 29 1 0 41 4 2 106 3 1 15 1 0 14 10 4 11 2 0 19 2 1 4 1 0 3 3 0 20 1 0 11 2 1 10 2 0 3 1 0 7 7 5 19 1 0 42 chain 12285 chr18 78077248 + 43391282 43391419 L1PA4 6152 + 3543 3680 151058 137 chain 215840 chr18 78077248 + 43391426 43393881 L1PA4 6152 + 3683 6144 18119 982 1 0 639 0 4 509 1 2 184 0 1 33 1 2 105 chain 125801 chr18 78077248 + 43395390 43397219 L1PB1 5432 + 3598 5420 29155 14 0 2 91 16 16 199 6 8 523 0 4 30 6 11 44 1 3 85 3 0 75 0 2 66 0 1 4 4 3 15 0 8 72 0 4 225 12 12 19 2 0 12 1 0 12 5 1 10 3 1 49 3 2 15 1 0 31 98 79 24 1 0 21 1 0 13 1 0 16 chain 3185 chr18 78077248 + 43419252 43419288 MIRb 242 - 124 160 221204 36 chain 21296 chr18 78077248 + 43501679 43501937 L1PA6 6164 + 5906 6162 122875 247 2 0 9 chain 26915 chr18 78077248 + 43530220 43530587 THE1A 353 + 0 353 96575 58 22 9 44 1 0 242 chain 5970 chr18 78077248 + 43530665 43530738 Tigger4b 360 - 257 330 185516 73 chain 3084 chr18 78077248 + 43559064 43559097 MER106A 234 - 77 110 223266 33 chain 45812 chr18 78077248 + 43560179 43560772 LTR71B 605 + 0 605 62217 133 13 19 139 0 4 58 1 2 79 0 1 170 chain 24351 chr18 78077248 + 43569165 43569512 THE1A 353 + 8 353 108370 5 2 0 51 1 2 28 1 0 17 0 2 6 17 15 219 chain 135734 chr18 78077248 + 43624122 43625636 L1PA3long 6157 + 4642 6156 26892 153 1 3 869 2 0 489 chain 3763 chr18 78077248 + 43653009 43653054 MADE1 96 + 1 46 210907 45 chain 7680 chr18 78077248 + 43656972 43657065 HY4 93 - 0 93 173038 93 chain 14064 chr18 78077248 + 43658915 43659074 L1PA2 6032 + 5873 6032 144337 159 chain 23806 chr18 78077248 + 43661355 43661655 AluSp 311 + 1 311 111437 48 6 12 215 0 4 31 chain 8276 chr18 78077248 + 43681075 43681211 MER65C 458 - 315 458 169540 71 24 22 30 0 9 11 chain 25408 chr18 78077248 + 43683600 43683891 AluSx4 309 + 1 292 102645 291 chain 2611 chr18 78077248 + 43718890 43718929 L1ME3A 1206 - 213 248 231555 6 4 0 29 chain 23298 chr18 78077248 + 43726153 43726433 AluSp 311 + 6 285 114211 119 1 0 160 chain 6917 chr18 78077248 + 43726454 43726554 L1MA3 4352 + 4206 4302 178059 52 2 0 24 1 0 6 1 0 14 chain 61098 chr18 78077248 + 43744697 43745442 LTR17 781 + 0 774 52292 282 0 1 24 0 2 18 1 0 101 2 3 189 0 4 91 5 27 32 chain 30174 chr18 78077248 + 43750691 43751009 AluYb8 318 - 0 318 84261 318 chain 25987 chr18 78077248 + 43759591 43759890 AluSp 311 - 12 311 100066 299 chain 26563 chr18 78077248 + 43903745 43904049 AluSp 311 - 7 311 97793 304 chain 27587 chr18 78077248 + 44010869 44011183 L1PA7 6471 - 12 326 94390 314 chain 25249 chr18 78077248 + 44012638 44012913 AluYc 301 + 0 277 103479 120 0 2 155 chain 10447 chr18 78077248 + 44020243 44020411 MER44A 345 + 102 268 158507 32 1 0 4 0 1 47 3 6 38 15 10 28 chain 28497 chr18 78077248 + 44021845 44022150 AluYg6 310 + 0 305 91196 305 chain 7181 chr18 78077248 + 44031375 44031475 L1MC2 1988 + 1417 1514 176203 34 3 0 63 chain 3172 chr18 78077248 + 44097369 44097409 MIR 256 + 107 148 221514 14 0 1 26 chain 15723 chr18 78077248 + 44123387 44123607 L1PA7 6471 - 6 226 139203 30 0 9 8 14 5 168 chain 28717 chr18 78077248 + 44125586 44125886 AluYa5 310 - 5 305 90263 300 chain 29354 chr18 78077248 + 44130254 44130564 AluYb8 318 + 0 310 87274 310 chain 14116 chr18 78077248 + 44150608 44150823 MER30 238 - 0 238 144159 39 3 0 68 4 0 6 5 32 64 3 6 23 chain 28737 chr18 78077248 + 44169017 44169418 LTR3B 427 + 0 418 90179 289 37 46 32 0 7 12 4 5 27 chain 27280 chr18 78077248 + 44190183 44190498 L1PA6 6164 + 5825 6141 95338 283 0 1 32 chain 66845 chr18 78077248 + 44193919 44194683 L1PA5 6144 + 5371 6135 49709 764 chain 2947 chr18 78077248 + 44225951 44225987 LTR85a 401 + 169 205 226178 36 chain 6684 chr18 78077248 + 44281398 44281582 MLT1B 390 + 83 266 179795 70 89 88 25 chain 2467 chr18 78077248 + 44291263 44291365 MIRb 242 - 64 168 233501 15 30 29 10 20 23 27 chain 11599 chr18 78077248 + 44310968 44311196 MER67C 710 + 391 629 153896 69 67 77 92 chain 39226 chr18 78077248 + 44314826 44315351 MLT2A2 560 + 0 560 70417 187 0 23 33 1 2 66 1 0 8 0 1 79 3 14 86 1 0 6 0 1 54 chain 487764 chr18 78077248 + 44322582 44328184 L1PA6 6164 + 527 6154 7450 260 0 17 99 0 4 93 1 6 264 1 0 512 0 1 546 1 2 858 0 1 80 2 1 425 1 2 818 1 0 197 2 1 1429 2 1 10 chain 30558 chr18 78077248 + 44338437 44338755 AluYb8 318 - 0 318 83316 318 chain 36128 chr18 78077248 + 44346821 44347295 LTR15 485 - 10 485 74730 18 0 1 16 7 0 159 0 4 47 0 3 68 1 2 5 0 2 22 4 0 69 0 1 58 chain 32017 chr18 78077248 + 44357490 44357947 MLT2A1 477 + 0 477 80836 138 0 1 5 0 1 24 1 5 149 1 0 62 34 49 43 chain 330516 chr18 78077248 + 44357947 44362276 HERVL-int 5654 + 0 5644 12185 73 1 0 98 1 0 359 320 0 299 16 1521 207 0 1 397 0 2 74 4 66 398 0 1 125 0 2 343 0 2 20 4 16 79 1 0 813 3 0 6 0 3 74 0 4 5 0 2 157 0 26 108 0 1 8 0 3 127 0 12 15 1 2 135 1 3 57 chain 29667 chr18 78077248 + 44362301 44362719 MLT2A1 477 + 19 477 85972 119 0 1 27 4 8 15 0 1 4 13 12 117 1 0 61 4 36 47 0 4 6 chain 30236 chr18 78077248 + 44369104 44369509 MER51B 395 + 0 395 84097 42 13 0 203 1 0 84 1 5 61 chain 29369 chr18 78077248 + 44382724 44383036 AluYa5 310 + 0 310 87205 97 2 0 213 chain 25516 chr18 78077248 + 44389435 44389737 AluSp 311 + 0 301 102156 28 1 0 273 chain 12757 chr18 78077248 + 44443357 44443544 AluJb 308 - 78 298 149223 54 13 39 56 0 1 21 7 13 36 chain 37590 chr18 78077248 + 44448163 44448737 LTR10B1 532 + 8 532 72699 166 8 0 16 32 0 41 4 2 165 1 0 86 31 24 24 chain 13415 chr18 78077248 + 44456973 44457244 HERVI-int 3819 + 3555 3819 146656 112 14 12 35 15 14 20 34 32 30 2 0 9 chain 39199 chr18 78077248 + 44457273 44457835 LTR10B1 532 + 12 532 70456 160 12 4 14 32 0 41 6 4 297 chain 496061 chr18 78077248 + 44503029 44508670 L1PA4 6152 - 1 6152 7066 172 7 1 274 11 7 1062 1 0 219 11 2 62 1 5 293 0 1 372 1 0 172 1 0 1233 0 1 1448 0 1 203 0 525 98 chain 119424 chr18 78077248 + 44513605 44514931 L1PA4 6152 - 1 1321 31256 133 1 0 40 6 0 1121 0 1 25 chain 26906 chr18 78077248 + 44521744 44522156 LTR10F 562 - 8 562 96608 92 3 1 55 0 20 17 11 12 50 5 10 20 5 11 13 1 109 104 0 4 36 chain 41366 chr18 78077248 + 44523223 44523735 MER41A 554 + 0 530 67451 6 0 2 133 3 5 226 0 1 54 0 8 33 0 5 57 chain 5723 chr18 78077248 + 44525065 44525195 LTR37B 484 + 338 471 187903 15 1 0 53 43 47 18 chain 27538 chr18 78077248 + 44537209 44537516 AluYf4 310 - 3 310 94546 307 chain 5198 chr18 78077248 + 44570514 44570574 MER30 238 - 38 98 193043 60 chain 8298 chr18 78077248 + 44570732 44570844 L1MB3 1562 + 1444 1555 169407 79 1 0 32 chain 9718 chr18 78077248 + 44620365 44620724 MLT1A1 405 + 39 405 161996 4 1 0 25 164 174 27 1 0 38 28 29 45 1 0 6 4 3 15 chain 97521 chr18 78077248 + 44659377 44660479 L1PA5 6144 - 9 1131 37415 491 0 15 76 0 1 251 0 4 284 chain 3340 chr18 78077248 + 44668741 44668779 MER58D 378 + 338 376 218227 38 chain 21898 chr18 78077248 + 44686581 44686874 Ricksha_0 1343 - 1001 1293 120636 116 14 13 163 chain 13979 chr18 78077248 + 44703911 44704103 MLT2A2 560 + 0 190 144656 165 15 13 12 chain 38529 chr18 78077248 + 44704123 44704591 MER9a1 513 - 0 499 71398 65 0 10 171 1 23 221 1 0 9 chain 129029 chr18 78077248 + 44707936 44709507 THE1A-int 1579 + 0 1574 28309 407 18 18 455 0 3 691 chain 27676 chr18 78077248 + 44709512 44709866 THE1A 353 + 0 353 94129 110 1 0 92 1 0 92 0 1 58 chain 3543 chr18 78077248 + 44723463 44723503 L1M1 2793 + 2632 2672 214664 40 chain 5732 chr18 78077248 + 44760845 44760908 U6 107 - 33 96 187816 63 chain 14010 chr18 78077248 + 44803083 44803236 LTR7B 505 + 0 153 144546 153 chain 4158 chr18 78077248 + 44841396 44841448 MLT1B 390 + 321 373 205124 52 chain 37177 chr18 78077248 + 44855395 44855941 MLT2A2 560 - 8 557 73271 23 31 22 81 9 20 61 5 4 139 10 11 14 1 0 113 0 2 59 chain 15716 chr18 78077248 + 44865741 44865926 L1PA5 6144 - 12 204 139219 144 0 7 41 chain 549975 chr18 78077248 + 44874596 44880614 L1PA2 6032 - 0 6020 1450 1284 0 1 1360 1 0 812 0 3 2316 1 0 244 chain 2365 chr18 78077248 + 44895165 44895204 Tigger2 2703 + 1519 1558 234571 13 1 2 20 1 0 4 chain 27329 chr18 78077248 + 44903478 44903836 THE1C 375 - 11 375 95175 14 1 0 209 1 5 27 0 1 4 1 0 40 0 3 61 chain 119347 chr18 78077248 + 44972231 44973809 THE1B-int 1605 + 0 1605 31283 427 1 26 119 4 8 81 51 51 563 1 0 56 1 2 44 6 5 59 1 0 164 chain 45816 chr18 78077248 + 44982110 44982710 LTR71B 605 + 0 605 62211 135 15 12 5 2 0 233 1 11 209 chain 50390 chr18 78077248 + 45018211 45018794 L1PA7 6471 - 1 584 58723 156 0 1 162 1 0 264 chain 5121 chr18 78077248 + 45031498 45031559 MER74A 558 - 497 558 193865 61 chain 5220 chr18 78077248 + 45048982 45049049 MER39 703 + 519 586 192826 67 chain 209317 chr18 78077248 + 45065196 45067617 L1PA6 6164 - 2 2436 18540 9 0 2 827 0 4 20 0 4 308 0 1 894 0 2 363 chain 21936 chr18 78077248 + 45116149 45116436 AluSc 308 + 7 292 120473 45 7 5 148 0 3 5 3 0 79 chain 59655 chr18 78077248 + 45131939 45132727 MER4E 760 - 0 760 53016 94 24 6 70 0 4 52 10 1 81 12 6 14 0 7 255 8 0 30 0 2 138 chain 558322 chr18 78077248 + 45163700 45169847 L1PA3long 6157 + 6 6157 468 311 5 4 1392 0 1 107 0 2 212 1 0 2375 0 1 86 0 1 1642 0 3 9 2 0 5 chain 564811 chr18 78077248 + 45186744 45192773 L1HS 6032 + 3 6032 216 6029 chain 3344 chr18 78077248 + 45211671 45211831 MLT1I 406 - 4 166 218153 32 109 111 19 chain 29284 chr18 78077248 + 45232258 45232583 L1PA2 6032 + 5703 6032 87640 174 0 4 151 chain 6857 chr18 78077248 + 45260379 45260474 MLT2B1 522 + 352 446 178532 75 3 2 17 chain 50239 chr18 78077248 + 45290372 45291227 L1PA16 3655 + 2778 3619 58842 58 2 0 37 12 16 14 1 0 19 1 0 53 5 7 137 7 15 60 15 14 75 20 18 93 1 2 20 8 5 74 6 13 68 4 1 12 25 7 7 5 0 16 chain 130510 chr18 78077248 + 45353823 45355319 SVA_B 1603 + 9 1603 27960 11 23 0 16 1 8 512 0 40 37 0 40 169 0 36 98 1 0 33 1 0 594 chain 25616 chr18 78077248 + 45383225 45383493 AluYa5 310 - 8 276 101642 268 chain 6318 chr18 78077248 + 45388642 45388948 MLT1C 463 - 0 333 182658 20 5 4 47 199 227 35 chain 3122 chr18 78077248 + 45399235 45399290 MER2 342 + 203 260 222513 11 6 8 38 chain 5608 chr18 78077248 + 45412364 45412470 MER2B 336 + 214 335 189004 55 28 43 23 chain 4387 chr18 78077248 + 45432567 45432713 Tigger4a 237 + 162 233 202121 14 82 7 50 chain 86898 chr18 78077248 + 45486670 45488047 MER11B 1079 + 0 1064 40826 116 307 0 291 4 5 353 2 4 107 0 1 153 0 1 24 11 0 9 chain 19540 chr18 78077248 + 45525680 45526051 THE1B 368 + 0 368 128543 47 0 1 63 0 3 6 2 0 47 90 86 52 8 7 56 chain 27984 chr18 78077248 + 45531967 45532275 AluYa5 310 - 2 310 93058 308 chain 12933 chr18 78077248 + 45533595 45533817 MER30 238 - 0 238 148488 94 37 52 66 3 4 22 chain 3890 chr18 78077248 + 45537096 45537139 MER53 195 - 128 171 209022 43 chain 12394 chr18 78077248 + 45568497 45568706 MER107 203 + 1 202 150658 14 0 1 20 8 10 71 5 1 40 0 6 6 5 1 8 9 0 23 chain 8293 chr18 78077248 + 45575380 45575476 MER85 139 + 0 96 169443 96 chain 22533 chr18 78077248 + 45594100 45594366 AluSp 311 + 10 276 117880 266 chain 3197 chr18 78077248 + 45618725 45618761 Tigger13a 716 + 196 232 221002 36 chain 24697 chr18 78077248 + 45721625 45721990 THE1B 368 + 0 368 106455 113 0 1 55 1 0 21 3 5 4 0 1 14 0 4 12 1 0 12 1 0 64 18 16 46 chain 3958 chr18 78077248 + 45741004 45741050 MER41B 635 + 507 553 208013 46 chain 126052 chr18 78077248 + 45769742 45771812 L1PB1 5432 + 3664 5404 29078 68 1 0 153 1 0 83 0 1 492 266 0 166 6 3 75 1 4 25 0 1 62 2 1 46 0 1 34 7 1 210 55 24 20 1 0 9 2 1 14 5 1 9 4 2 50 2 1 15 1 0 45 1 0 30 9 0 15 3 1 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 19361 chr18 78077248 + 45770561 45770788 AluY 311 + 57 285 129041 75 0 1 152 chain 65093 chr18 78077248 + 45802680 45803381 L1PA2 6032 - 10 711 50530 701 chain 42526 chr18 78077248 + 45803381 45803835 L1PA2 6032 + 4882 5336 65987 454 chain 118412 chr18 78077248 + 45807544 45808842 L1PA3long 6157 + 4859 6157 31643 1298 chain 38949 chr18 78077248 + 45848903 45849553 L1PB1 5432 + 4746 5427 70803 9 0 56 291 1 0 15 3 0 21 1 0 8 1 0 12 5 1 8 2 0 53 2 1 9 15 14 37 1 0 15 2 0 6 1 0 11 7 0 14 2 0 5 1 0 14 3 8 16 1 0 18 9 8 5 0 2 19 2 0 5 chain 11802 chr18 78077248 + 45884760 45884971 MSTB 430 + 213 430 153030 31 1 0 63 48 55 68 chain 6422 chr18 78077248 + 45911352 45911430 MER30 238 + 156 237 181843 40 0 3 38 chain 4438 chr18 78077248 + 45927061 45927113 MER33 330 + 165 217 201475 52 chain 23969 chr18 78077248 + 45953649 45954027 THE1D 372 - 0 372 110518 172 32 34 85 33 25 56 chain 5634 chr18 78077248 + 45958639 45958710 MLT1A1 405 + 6 78 188730 30 0 1 41 chain 90101 chr18 78077248 + 45960216 45961297 L1PA7 6471 + 5379 6467 39612 235 0 3 83 0 2 270 1 2 484 0 1 8 chain 3425 chr18 78077248 + 45965075 45965162 MER21C 908 + 72 119 216667 19 40 0 28 chain 46082 chr18 78077248 + 45977466 45978538 LTR1 825 - 7 813 61962 149 0 3 10 0 1 121 2 0 146 474 207 165 1 0 4 chain 3274 chr18 78077248 + 45983162 45983242 MIR 256 - 70 153 219466 16 33 36 31 chain 4955 chr18 78077248 + 45990660 45990810 MLT1J2 417 + 135 298 195649 34 74 87 42 chain 4145 chr18 78077248 + 46000276 46000327 MLT1A-int 1186 + 622 673 205321 51 chain 3216 chr18 78077248 + 46024670 46024713 L1MCa 1829 + 1108 1164 220632 34 0 13 9 chain 17382 chr18 78077248 + 46038881 46039221 L1PB1 5432 + 5103 5413 134558 11 1 0 12 0 1 11 1 0 9 27 20 53 3 2 15 1 0 43 1 0 16 4 1 16 8 0 14 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 62029 chr18 78077248 + 46049660 46050409 L1PA8 5853 + 5108 5853 51887 67 0 1 346 0 1 22 0 1 16 1 0 46 2 0 74 1 0 5 2 1 52 2 1 19 1 0 93 chain 3654 chr18 78077248 + 46085865 46086118 MLT1G1 539 - 31 292 212727 24 196 204 33 chain 4535 chr18 78077248 + 46088656 46088722 MIR 256 - 136 195 200400 11 7 0 48 chain 23162 chr18 78077248 + 46118613 46118896 AluSp 311 + 21 310 114845 88 0 7 9 1 0 185 chain 518185 chr18 78077248 + 46175356 46181500 L1PA6 6164 + 0 6159 5361 309 14 17 84 1 2 44 10 9 874 0 1 197 9 14 215 1 0 4 1 2 88 20 0 472 1 2 107 28 31 13 13 39 541 18 1 123 0 1 425 0 4 83 0 2 657 0 4 950 0 3 684 0 1 151 2 0 5 chain 29153 chr18 78077248 + 46191280 46191584 AluYb8 318 - 14 318 88302 304 chain 11234 chr18 78077248 + 46200087 46200281 MER30 238 + 0 238 155291 15 0 18 66 2 0 5 4 23 26 1 7 29 10 13 36 chain 15242 chr18 78077248 + 46226404 46226725 THE1B 368 + 0 337 140660 28 79 90 51 1 0 29 8 16 18 10 8 97 chain 14180 chr18 78077248 + 46292332 46292492 L1PA4 6152 - 0 167 143954 6 0 7 154 chain 33894 chr18 78077248 + 46488078 46488857 MER41A 554 - 87 554 77784 24 318 0 124 2 0 30 16 17 70 12 18 110 0 1 73 chain 24000 chr18 78077248 + 46509927 46510214 AluSc5 308 - 13 300 110333 287 chain 19026 chr18 78077248 + 46531468 46531690 L1PA4 6152 - 0 228 130045 6 0 5 132 0 1 84 chain 74025 chr18 78077248 + 46560821 46561647 L1PA5 6144 - 0 827 46500 776 0 1 50 chain 25158 chr18 78077248 + 46576450 46576752 AluSp 311 - 6 303 103966 172 6 1 124 chain 24874 chr18 78077248 + 46591736 46592031 AluSp 311 - 16 311 105491 295 chain 168930 chr18 78077248 + 46605775 46607910 SVA_D 2077 - 0 2077 22172 596 78 0 92 0 1 169 50 0 89 0 49 29 1 0 6 35 10 6 1 0 27 0 1 50 0 36 8 3 0 71 39 0 112 0 37 649 0 17 12 1 0 6 1 0 4 chain 5796 chr18 78077248 + 46606371 46606449 SVA_D 2077 - 743 821 112818 78 chain 3508 chr18 78077248 + 46606710 46606749 SVA_D 2077 - 633 671 150915 6 1 0 32 chain 2776 chr18 78077248 + 46606885 46606920 SVA_D 2077 - 905 940 122464 35 chain 2617 chr18 78077248 + 46607086 46607119 SVA_D 2077 - 1200 1233 122464 33 chain 15150 chr18 78077248 + 46614757 46614934 L1PA5 6144 + 5960 6144 140915 166 0 7 11 chain 540303 chr18 78077248 + 46628801 46634917 L1PA4 6152 - 14 6145 2772 215 0 2 29 1 0 584 0 4 383 0 1 961 0 2 119 0 1 99 1 2 322 0 2 1096 0 3 2306 chain 189763 chr18 78077248 + 46672576 46674712 L1PA4 6152 + 4000 6141 20076 1303 1 5 691 7 0 7 0 7 11 0 1 116 chain 10679 chr18 78077248 + 46685100 46685368 L1MA3 4352 + 4058 4314 157487 34 55 36 15 3 0 92 4 0 7 38 52 20 chain 31687 chr18 78077248 + 46714859 46715220 L1PA4 6152 + 5791 6152 81341 361 chain 159483 chr18 78077248 + 46723969 46725746 L1PA5 6144 + 4351 6132 23406 946 0 4 831 chain 137257 chr18 78077248 + 46728682 46730239 SVA_F 1814 + 291 1811 26596 546 6 6 36 1 0 53 0 1 14 1 15 51 49 0 157 1 0 17 2 0 218 0 1 405 chain 3365 chr18 78077248 + 46729390 46729439 SVA_F 1814 + 1140 1189 138150 49 chain 557370 chr18 78077248 + 46742138 46748286 L1PA3long 6157 + 6 6157 569 4151 0 3 1997 chain 72650 chr18 78077248 + 46771291 46772345 MER11A 1151 + 0 1151 47194 79 13 21 100 1 0 80 17 14 36 1 3 136 5 21 42 0 12 128 16 19 11 4 5 28 8 12 67 0 1 19 0 57 113 8 7 74 1 0 24 1 0 42 chain 100267 chr18 78077248 + 46807191 46808328 L1PA4 6152 + 5009 6152 36700 1104 0 1 27 0 5 6 chain 141341 chr18 78077248 + 46819203 46820873 L1PA7 6471 - 7 1687 25930 135 1 0 190 0 1 101 0 1 71 3 1 257 0 4 56 0 3 23 2 0 18 0 4 5 0 1 32 0 1 776 chain 38744 chr18 78077248 + 46837799 46838258 L1PA5 6144 + 5686 6144 71087 315 0 1 133 2 0 9 chain 32079 chr18 78077248 + 46839391 46840159 MER41A 554 + 15 554 80724 162 355 123 20 0 3 231 chain 82764 chr18 78077248 + 46854820 46855810 L1PA6 6164 + 5171 6161 42432 144 2 0 55 0 3 348 1 0 295 3 2 123 0 3 10 2 0 7 chain 41249 chr18 78077248 + 46899533 46900086 MER41A 554 - 0 554 67596 153 1 0 4 0 1 318 24 25 53 chain 41946 chr18 78077248 + 46902026 46902568 MLT2A2 560 + 0 560 66689 372 0 3 26 1 12 137 0 4 6 chain 22245 chr18 78077248 + 46916874 46917163 AluSg7 307 - 10 296 119143 11 4 0 134 0 3 7 8 5 5 0 1 120 chain 23615 chr18 78077248 + 46944168 46944449 AluSp 311 + 20 301 112495 281 chain 517956 chr18 78077248 + 46946910 46952921 L1PA5 6144 + 0 6139 5381 151 53 61 273 4 18 464 0 1 201 9 0 738 1 110 553 0 3 603 1 0 26 1 0 831 0 1 157 5 9 1101 1 0 838 chain 127693 chr18 78077248 + 46976549 46978414 HUERS-P3b-int 2065 + 13 1941 28646 81 4 0 35 0 2 15 43 45 125 75 0 102 1 0 127 1 25 35 0 4 78 4 0 7 1 0 80 0 2 52 1 0 27 1 0 151 0 13 166 3 4 31 0 1 149 0 1 100 1 0 44 25 2 17 0 1 66 2 0 17 1 0 20 1 0 79 0 131 36 4 0 57 chain 45147 chr18 78077248 + 46978420 46979011 LTR12C 1709 - 0 1050 62870 82 1 0 88 0 102 206 24 16 12 0 366 178 chain 76821 chr18 78077248 + 46979015 46980012 LTR12C 1709 + 471 1709 45075 181 0 119 66 1 0 46 1 0 203 26 32 85 0 1 4 3 20 211 0 101 87 1 0 82 chain 3963 chr18 78077248 + 46994676 46994744 MLT1C 463 - 396 463 207935 32 13 12 23 chain 22840 chr18 78077248 + 47001535 47001813 AluSp 311 - 23 302 116392 177 1 2 100 chain 11511 chr18 78077248 + 47035095 47035354 L1MA5A 2387 + 2159 2375 154247 27 0 1 28 3 0 15 22 0 50 52 37 15 1 0 8 1 0 22 2 0 13 chain 7883 chr18 78077248 + 47055197 47055381 MER4B 649 + 0 214 171782 25 18 17 4 0 1 65 1 0 4 42 73 25 chain 43444 chr18 78077248 + 47056848 47057391 MER9a2 513 - 0 513 64879 195 34 2 276 3 5 35 chain 25428 chr18 78077248 + 47079292 47079625 MER57A1 433 - 0 336 102559 54 1 2 10 1 0 72 5 6 88 0 2 102 chain 91268 chr18 78077248 + 47079651 47080714 MER11C 1089 - 26 1089 39209 394 1 0 90 1 2 577 chain 164308 chr18 78077248 + 47103395 47105371 SVA_F 1814 - 11 1804 22770 4 0 1 643 99 0 56 50 0 133 3 18 20 49 0 40 1 0 878 chain 2583 chr18 78077248 + 47104095 47104141 SVA_F 1814 - 663 708 146024 13 1 0 32 chain 2807 chr18 78077248 + 47104197 47104247 SVA_F 1814 - 842 956 146024 8 3 66 17 13 14 9 chain 2962 chr18 78077248 + 47104403 47104442 SVA_F 1814 - 695 734 123512 39 chain 3198 chr18 78077248 + 47106829 47106872 MER58A 224 - 147 186 220981 32 4 0 7 chain 23445 chr18 78077248 + 47121921 47122211 AluSx4 309 + 4 294 113404 290 chain 7009 chr18 78077248 + 47136016 47136123 MER5A1 166 - 9 118 177410 34 13 15 60 chain 14286 chr18 78077248 + 47213361 47213634 MER1B 344 - 0 303 143600 57 59 89 106 1 12 13 11 0 26 chain 4917 chr18 78077248 + 47218854 47218932 MER58A 224 + 49 147 196089 34 9 29 35 chain 4144 chr18 78077248 + 47235462 47235671 L1PA16 3655 + 3290 3501 131618 75 1 0 18 1 3 23 2 3 89 chain 52744 chr18 78077248 + 47235671 47236324 PABL_A 660 + 0 660 57163 227 1 0 113 2 1 153 0 10 75 1 0 81 chain 1210 chr18 78077248 + 47236332 47236393 L1PA16 3655 + 3505 3566 131618 61 chain 517139 chr18 78077248 + 47236868 47243282 L1PA7 6471 - 5 6471 5469 7 2 0 140 5 6 131 0 8 261 8 11 111 1 0 167 0 4 35 0 1 105 1 0 146 1 0 263 0 1 10 2 4 62 8 5 122 0 1 1263 7 6 4 0 1 52 6 5 251 6 8 840 0 1 865 0 4 208 0 1 72 13 32 15 0 1 334 4 0 6 4 8 118 23 28 166 3 0 62 21 29 73 1 2 166 0 1 243 chain 280708 chr18 78077248 + 47244342 47247477 L1PA4 6152 + 3036 6152 14603 129 1 0 1966 10 0 46 4 1 720 1 0 248 4 0 6 chain 3949 chr18 78077248 + 47261643 47261693 MER103C 291 + 141 191 208151 50 chain 23971 chr18 78077248 + 47286742 47287037 AluSg7 307 + 10 304 110504 54 2 0 67 0 1 172 chain 20891 chr18 78077248 + 47287053 47287321 AluSg 306 + 3 258 124313 72 15 0 158 0 2 23 chain 19934 chr18 78077248 + 47296678 47297427 L1PB1 5432 - 45 435 127349 17 1 0 24 2 0 14 9 6 18 16 6 6 2 0 15 1 0 7 1 0 37 1 0 16 2 1 45 23 17 14 3 2 4 1 0 20 351 20 82 0 2 17 chain 494754 chr18 78077248 + 47297449 47302933 L1PA3long 6157 - 8 6155 7129 332 1 0 516 0 1 2064 0 4 61 1 0 2149 1 0 118 0 128 61 0 7 86 0 526 94 chain 165508 chr18 78077248 + 47302933 47305377 L1PBa 3878 - 1518 3661 22560 218 0 4 214 324 16 84 5 6 194 3 0 10 1 0 139 0 2 5 1 5 20 0 1 83 3 0 354 4 5 13 9 14 449 1 0 238 1 0 49 2 0 20 chain 25898 chr18 78077248 + 47308933 47309234 AluY 311 + 0 299 100448 39 3 0 93 0 1 166 chain 143064 chr18 78077248 + 47325579 47327278 SVA_D 2077 + 24 2077 25643 14 10 7 8 0 8 594 0 37 118 37 0 109 0 37 30 0 2 14 0 1 29 0 3 46 0 4 43 1 300 431 1 0 151 4 8 59 chain 76289 chr18 78077248 + 47334825 47335849 MER11A 1151 - 6 1151 45316 14 1 0 9 7 11 26 1 0 8 1 5 210 3 0 56 2 1 112 6 7 126 1 0 17 0 7 91 3 4 21 2 1 52 0 6 33 0 2 32 4 0 73 6 15 28 0 99 79 chain 26289 chr18 78077248 + 47335849 47336404 L1MC2 1988 + 1432 1987 98863 101 0 5 80 0 1 52 95 102 22 50 46 6 1 0 70 36 29 23 1 0 18 chain 7683 chr18 78077248 + 47347368 47347467 MER6A 605 + 362 465 173029 37 0 4 62 chain 31270 chr18 78077248 + 47407144 47407540 LTR3 431 + 24 422 82042 25 0 1 294 1 2 76 chain 42620 chr18 78077248 + 47453527 47455476 L1PB1 5432 + 3752 5422 65874 210 7 5 6 0 1 44 1189 937 111 9 12 25 16 17 18 1 0 4 3 2 14 5 1 9 6 4 41 13 12 11 1 0 45 1 0 15 1 0 4 2 0 8 7 0 16 11 8 14 2 0 24 1 0 22 1 0 12 1 0 14 1 0 4 chain 146105 chr18 78077248 + 47468048 47469734 L1PA4 6152 + 4490 6152 25146 315 15 6 320 10 0 46 18 1 634 1 0 299 0 8 22 0 5 6 chain 9130 chr18 78077248 + 47472568 47472814 Tigger4a 237 - 32 199 164910 25 2 20 56 108 11 55 chain 8575 chr18 78077248 + 47474266 47474374 L1PA4 6152 - 42 140 167874 19 10 0 79 chain 6146 chr18 78077248 + 47474374 47474441 L1PA4 6152 + 6084 6151 184024 67 chain 54979 chr18 78077248 + 47494578 47495237 PABL_A 660 - 0 660 55717 88 1 0 147 0 3 142 2 1 279 chain 8903 chr18 78077248 + 47495887 47496009 MER51B 395 + 257 395 166127 39 1 13 22 0 4 60 chain 18634 chr18 78077248 + 47517979 47518193 L1PA7 6471 + 6245 6459 131121 214 chain 15353 chr18 78077248 + 47570068 47570401 L1PB1 5432 + 5107 5427 140332 8 3 0 6 1 0 17 1 0 6 0 3 9 9 5 7 2 0 8 4 15 29 2 1 16 4 3 40 1 0 16 2 0 6 7 6 19 2 0 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 120835 chr18 78077248 + 47573103 47574445 L1PA4 6152 + 4783 6129 30747 5 0 1 1028 0 1 220 0 1 84 0 1 5 chain 65091 chr18 78077248 + 47578365 47579077 L1PA3long 6157 + 5437 6149 50533 712 chain 25339 chr18 78077248 + 47600392 47600734 THE1A 353 - 0 353 103030 98 0 1 10 0 7 39 5 7 81 2 1 9 1 2 92 0 1 5 chain 133946 chr18 78077248 + 47610957 47612445 L1PA4 6152 + 4663 6151 27223 1488 chain 54813 chr18 78077248 + 47627831 47628704 L1PA8A 6298 + 5393 6281 55830 76 0 4 16 41 43 19 2 0 20 0 3 18 8 11 146 0 4 120 0 2 81 3 4 4 1 0 61 36 19 123 35 52 28 4 3 31 chain 25085 chr18 78077248 + 47651596 47651891 L1PA5 6144 + 5838 6134 104383 78 0 1 217 chain 265635 chr18 78077248 + 47674288 47677213 L1PA3long 6157 + 3228 6157 15410 718 0 1 1177 1 4 1029 chain 25341 chr18 78077248 + 47682651 47683025 THE1C 375 + 0 375 103013 87 7 8 11 29 33 168 3 0 43 1 0 25 chain 24662 chr18 78077248 + 47733724 47734007 AluSp 311 - 29 311 106660 150 1 0 132 chain 6086 chr18 78077248 + 47735200 47735277 MER96B 391 - 212 289 184536 77 chain 7603 chr18 78077248 + 47736805 47737135 MLT1C 463 - 27 323 173524 85 216 182 29 chain 73702 chr18 78077248 + 47746515 47747600 MER11A 1151 - 0 1151 46672 51 0 1 111 6 7 40 20 21 37 18 0 21 6 13 13 25 1 144 6 8 144 0 1 10 0 1 22 0 2 59 0 1 149 4 0 60 0 4 52 8 0 24 0 99 55 chain 62041 chr18 78077248 + 47748802 47749592 HERVK11-int 2540 - 302 1082 51883 127 11 9 78 1 0 169 2 1 19 1 0 103 18 13 261 chain 30621 chr18 78077248 + 47749609 47749995 MER11A 1151 - 469 857 83168 7 1 0 136 0 1 58 1 0 36 0 1 115 0 2 32 chain 13952 chr18 78077248 + 47749999 47750203 MER11A 1151 - 857 1151 144745 64 1 0 52 8 0 24 10 109 45 chain 33915 chr18 78077248 + 47766318 47766904 LTR10F 562 + 0 424 77748 108 112 0 79 28 0 41 0 3 35 25 0 158 chain 66240 chr18 78077248 + 47767866 47768917 MER11A 1151 - 1 1150 49988 65 1 0 52 8 9 10 25 24 23 6 5 66 2 34 15 0 20 10 31 38 32 4 8 33 20 24 129 9 21 23 24 40 143 0 2 30 8 5 90 2 0 112 0 8 78 chain 28962 chr18 78077248 + 47771470 47771779 AluYb8 318 + 0 309 89170 309 chain 82738 chr18 78077248 + 47783608 47785118 L1MA1 4479 + 3010 4151 42443 163 4 0 77 2 1 12 5 0 34 0 4 88 3 0 129 345 0 197 1 0 24 2 0 16 1 0 71 1 0 8 1 2 10 2 0 13 1 0 58 0 1 15 1 0 14 12 8 123 1 0 27 2 0 37 1 0 9 chain 5752 chr18 78077248 + 47804358 47804441 MER44B 551 - 22 99 187624 59 6 0 18 chain 5197 chr18 78077248 + 47818418 47818485 MER44D 709 + 86 153 193067 67 chain 39314 chr18 78077248 + 47835071 47835561 LTR3B_ 500 - 0 494 70302 78 13 15 107 0 1 137 7 7 4 0 1 144 chain 25323 chr18 78077248 + 47836515 47836847 THE1A 353 - 21 353 103108 64 5 4 5 0 1 78 0 1 6 1 0 173 chain 7642 chr18 78077248 + 47838871 47838964 MER68 562 - 469 562 173272 93 chain 42254 chr18 78077248 + 47855237 47855698 L1PA4 6152 - 762 1223 66095 461 chain 68014 chr18 78077248 + 47855698 47856454 L1PA4 6152 + 5391 6152 49243 750 0 5 6 chain 32885 chr18 78077248 + 47864759 47865183 MER83 447 - 17 447 79389 20 8 11 152 0 3 244 chain 7784 chr18 78077248 + 47865815 47865909 MER83 447 - 353 447 172393 94 chain 566158 chr18 78077248 + 47870329 47876357 L1HS 6032 - 2 6030 140 6028 chain 379597 chr18 78077248 + 47891367 47895717 L1PA5 6144 - 16 4416 10766 482 0 14 64 1 0 82 0 3 185 11 15 44 1 2 846 0 2 1129 0 4 942 0 1 117 0 2 57 0 6 13 0 1 150 0 13 226 chain 28122 chr18 78077248 + 47899555 47899947 LTR7 482 + 0 474 92562 101 15 14 17 0 51 41 5 37 46 0 1 139 1 0 27 chain 45092 chr18 78077248 + 47900324 47900959 PABL_B 668 + 1 668 62944 63 1 9 164 1 0 24 1 0 87 4 3 34 27 33 168 0 2 20 0 19 41 chain 2652 chr18 78077248 + 47908999 47909067 MER20 218 - 151 218 230991 27 28 27 13 chain 20789 chr18 78077248 + 47911019 47911239 L1HS 6032 + 5812 6032 124648 220 chain 25837 chr18 78077248 + 47923127 47923438 AluSp 311 + 0 305 100714 120 4 0 8 2 0 177 chain 33323 chr18 78077248 + 47923766 47924162 PABL_A 660 - 249 660 78701 107 0 2 208 0 9 30 0 4 51 chain 48159 chr18 78077248 + 47924352 47925042 LTR30 714 + 2 704 60353 247 0 5 35 7 1 149 7 22 50 1 2 83 0 2 26 4 1 6 0 2 3 5 0 10 19 21 25 1 0 12 chain 50130 chr18 78077248 + 47926153 47926773 PABL_A 660 - 0 660 58920 446 0 39 67 13 14 94 chain 64292 chr18 78077248 + 47931731 47933993 HERVS71-int 4705 + 2447 4419 50882 13 32 20 9 1 0 5 1 0 12 1 0 10 4 1 39 1 0 13 1 0 41 1 0 20 2 1 39 20 16 11 1 0 21 23 17 11 1 0 15 2 0 9 1 0 13 64 49 12 2 0 30 8 6 32 3 0 8 1 0 9 1 0 13 81 7 21 1 0 20 1 0 3 1 0 8 1 0 16 139 102 6 0 4 20 67 138 12 33 25 24 21 17 11 8 12 6 1 0 18 3 1 57 25 20 6 1 0 29 1 0 32 6 3 53 9 7 11 1 0 35 1 0 12 2 0 10 1 0 11 1 0 4 4 2 5 2 0 5 1 0 29 1 0 4 2 1 6 2 0 4 1 0 21 17 13 19 1 0 7 6 4 33 4 1 22 1 0 5 0 1 12 2 0 6 1 0 25 2 0 14 1 0 23 5 0 3 24 0 34 2 1 11 4 2 13 24 19 24 0 2 19 1 0 8 1 0 8 2 1 10 6 4 17 2 0 9 2 0 21 301 212 21 2 1 14 chain 125012 chr18 78077248 + 47943254 47944804 SVA_A 1864 - 0 1846 29390 537 46 239 202 1 0 123 1 0 35 3 112 118 43 0 15 17 56 409 chain 1520 chr18 78077248 + 47944322 47944359 SVA_A 1864 - 804 841 167588 37 chain 12185 chr18 78077248 + 47948400 47948578 MER2 342 + 149 317 151473 83 9 0 58 1 0 27 chain 161716 chr18 78077248 + 47961625 47963618 L1PA7 6471 + 0 6465 23101 54 1 0 121 0 4375 118 0 4 187 1 69 488 1 0 104 0 1 99 0 5 73 0 2 54 0 1 129 0 1 490 4 23 61 2 0 6 chain 21399 chr18 78077248 + 47966695 47967050 THE1D 372 + 0 372 122517 55 0 1 79 7 11 16 0 1 17 50 0 8 7 60 33 0 8 83 chain 4979 chr18 78077248 + 47970543 47970606 MLT1F 544 + 465 528 195378 63 chain 28752 chr18 78077248 + 47971776 47972153 THE1C 375 - 0 375 90107 189 1 2 131 0 1 25 4 0 27 chain 61716 chr18 78077248 + 47975520 47976284 LTR17 781 - 0 781 52033 12 1 0 28 5 27 140 0 1 224 5 0 22 1 0 216 0 1 110 chain 36322 chr18 78077248 + 47983283 47983804 MER4B 649 - 74 649 74474 145 8 6 17 0 1 27 11 13 7 0 15 145 0 42 4 0 1 59 4 0 63 1 0 30 chain 13850 chr18 78077248 + 48011981 48012203 MER30 238 + 0 236 145066 107 13 0 7 14 44 32 3 0 46 chain 32394 chr18 78077248 + 48014070 48014622 MER57-int 2662 + 2148 2659 80205 184 2 0 65 5 0 10 33 33 64 36 21 18 2 0 6 2 1 6 3 0 27 1 0 9 5 0 33 7 0 34 chain 31224 chr18 78077248 + 48014627 48015021 MER57A1 433 + 0 397 82116 152 0 1 126 0 2 116 chain 42646 chr18 78077248 + 48015112 48015658 MLT2A2 560 + 0 556 65847 393 2 1 8 0 11 143 chain 21164 chr18 78077248 + 48021720 48021965 L1PA4 6152 + 5905 6152 123333 180 0 2 65 chain 389713 chr18 78077248 + 48024896 48029588 L1PA6 6164 - 3 6164 10458 8 0 1 134 1 8 178 0 1 516 1 0 543 1 0 263 0 1441 165 5 6 28 1 0 595 5 7 308 0 1 916 1 0 78 1 2 140 0 17 235 5 4 47 0 2 279 0 2 36 1 0 4 0 1 129 2 0 66 chain 10728 chr18 78077248 + 48037003 48037326 L1PB1 5432 + 5117 5422 157288 21 1 0 6 1 0 13 27 21 38 10 9 11 1 0 43 2 1 16 1 0 6 17 6 18 54 61 4 1 0 13 2 1 17 chain 24501 chr18 78077248 + 48043649 48044041 THE1D 372 + 0 371 107541 47 39 0 12 6 16 124 4 6 33 7 13 120 chain 63550 chr18 78077248 + 48070051 48070911 MER41-int 2638 + 1726 2590 51220 28 9 0 6 0 9 82 2 0 5 4 7 229 1 0 47 1 3 209 8 7 86 10 11 12 0 1 86 0 1 35 chain 40628 chr18 78077248 + 48070948 48071492 MER41B 635 + 0 548 68402 107 21 22 297 0 3 32 14 13 37 0 1 36 chain 19201 chr18 78077248 + 48078011 48078336 L1MA2 4263 - 149 469 129520 9 1 0 29 23 18 93 27 31 13 0 1 4 1 0 114 3 0 8 chain 10030 chr18 78077248 + 48078353 48078487 Tigger2a 444 + 217 353 160431 11 0 3 4 1 0 118 chain 16857 chr18 78077248 + 48093467 48093677 L1PA7 6471 - 2 217 135949 10 0 4 139 7 8 54 chain 16168 chr18 78077248 + 48095921 48096116 MER107 203 + 3 203 137849 158 0 5 37 chain 8829 chr18 78077248 + 48110037 48110144 LTR27B 950 - 826 933 166496 107 chain 26420 chr18 78077248 + 48115699 48115983 AluY 311 + 15 300 98336 117 0 1 167 chain 61327 chr18 78077248 + 48135095 48135788 SVA_B 1603 - 4 695 52187 409 0 2 263 4 0 17 chain 24682 chr18 78077248 + 48199949 48200239 AluY 311 + 7 296 106536 57 2 0 68 0 1 163 chain 15789 chr18 78077248 + 48214958 48215254 L1PB1 5432 + 5159 5427 138983 9 2 0 52 2 1 16 1 0 44 40 27 19 2 0 5 1 0 14 2 0 26 1 0 19 1 0 13 1 0 11 1 0 7 2 0 5 chain 3516 chr18 78077248 + 48265929 48265972 MIR 256 - 110 153 215122 43 chain 6233 chr18 78077248 + 48266060 48266140 MIR 256 + 67 147 183290 80 chain 236371 chr18 78077248 + 48303072 48306267 MER61-int 3695 + 30 3247 16961 16 1 0 50 20 19 157 1 0 43 0 1 83 0 3 5 28 10 19 46 29 10 0 1 75 0 1 90 2 0 77 0 63 369 1 0 94 0 1 65 0 2 47 0 3 165 20 22 467 7 8 113 6 0 15 33 24 205 0 3 14 0 6 10 0 1 197 2 0 84 4 7 5 3 0 56 1 0 82 5 0 16 1 0 36 2 1 251 1 0 11 0 1 84 chain 17362 chr18 78077248 + 48310503 48310734 AluSz 310 - 50 297 134619 36 1 0 27 7 24 160 chain 6119 chr18 78077248 + 48337216 48337295 L1PA5 6144 - 2 76 184272 7 5 0 67 chain 22677 chr18 78077248 + 48356612 48356906 AluY 311 + 10 301 117177 197 16 15 40 0 1 32 3 0 6 chain 5305 chr18 78077248 + 48361197 48361293 LTR56 451 + 25 112 191966 7 0 1 4 1 0 54 16 7 14 chain 25852 chr18 78077248 + 48391443 48391748 AluSp 311 - 7 310 100644 184 2 0 119 chain 4586 chr18 78077248 + 48404125 48404214 L1MA7 2200 - 118 209 199789 28 21 23 40 chain 24801 chr18 78077248 + 48420958 48421262 AluY 311 + 0 298 105887 109 14 8 181 chain 3353 chr18 78077248 + 48440714 48440754 MER5B 177 - 51 91 218000 40 chain 6860 chr18 78077248 + 48441488 48441579 Tigger2b_Pri 1066 + 828 920 178507 85 0 1 6 chain 6687 chr18 78077248 + 48485640 48485724 HY1 111 - 2 86 179778 84 chain 6159 chr18 78077248 + 48489614 48489694 L1M1 2793 + 1844 1924 183906 80 chain 188762 chr18 78077248 + 48527943 48530071 L1PA5 6144 + 4013 6142 20166 380 0 1 45 0 1 854 1 0 848 chain 25633 chr18 78077248 + 48542784 48543081 AluSc5 308 + 11 308 101572 297 chain 311551 chr18 78077248 + 48619238 48623192 L1PA7 6471 - 19 3758 12944 226 1 21 503 0 2 70 1 6 85 1 7 855 0 8 68 6 2 85 1 0 154 0 2 410 0 4 362 0 2 87 271 9 184 0 1 234 2 1 167 1 0 141 0 4 39 chain 115708 chr18 78077248 + 48637180 48638739 LTR12C 1709 - 0 1709 32555 84 7 6 157 22 0 234 44 13 82 0 47 219 0 118 278 15 10 80 0 43 68 3 4 266 chain 398863 chr18 78077248 + 48639865 48646399 HERV9-int 5642 - 830 5642 10141 297 0 4 1967 0 12 704 1650 0 431 94 94 52 5 0 144 84 0 194 4 0 52 1 0 41 1 2 27 4 3 246 7 9 365 0 4 164 chain 134992 chr18 78077248 + 48642923 48644482 SVA_B 1603 - 0 1603 27016 5 2 0 620 2 1 124 0 40 761 23 30 22 chain 53500 chr18 78077248 + 48646498 48647221 LTR12C 1709 - 0 907 56681 84 7 6 94 0 170 127 11 4 6 24 0 63 0 47 271 1 0 35 chain 117 chr18 78077248 + 48647248 48647418 LTR12C 1709 - 1053 1235 181786 45 7 8 23 27 38 68 chain 5201 chr18 78077248 + 48647424 48647496 LTR12C 1709 - 1240 1309 193013 8 3 0 61 chain 3479 chr18 78077248 + 48647515 48647552 LTR12C 1709 - 1371 1408 215686 37 chain 21623 chr18 78077248 + 48647579 48647852 LTR12C 1709 - 1436 1709 121690 273 chain 3995 chr18 78077248 + 48655052 48655161 L1MD1 2063 + 1824 1907 207451 23 46 20 40 chain 3145 chr18 78077248 + 48716532 48716569 MIRc 230 - 121 158 222062 37 chain 4504 chr18 78077248 + 48745429 48745479 MLT1A 405 - 322 372 200732 50 chain 11369 chr18 78077248 + 48747442 48747691 L1PB1 5432 + 5194 5420 154819 23 7 6 13 1 0 44 1 0 14 31 18 14 8 6 14 2 0 24 1 0 21 1 0 9 8 7 13 chain 8992 chr18 78077248 + 48772569 48772769 MSTC 436 + 0 215 165646 39 34 24 32 0 33 13 16 0 8 8 16 50 chain 10031 chr18 78077248 + 48775824 48775934 MLT1A0 366 - 0 110 160424 110 chain 23548 chr18 78077248 + 48795958 48796235 AluSp 311 + 10 287 112861 277 chain 26682 chr18 78077248 + 48797592 48798073 L1MA1 4479 + 3726 4190 97378 12 2 0 17 9 7 26 5 4 23 0 4 7 1 0 19 2 0 14 1 0 23 0 5 25 0 1 20 1 0 9 3 2 8 4 1 125 1 0 28 3 1 35 1 0 9 1 0 4 8 6 11 6 0 18 chain 33956 chr18 78077248 + 48799807 48800303 MER65D 500 - 0 500 77686 20 1 3 40 1 0 52 0 4 10 8 9 82 0 3 144 2 0 36 14 16 15 5 0 66 chain 52244 chr18 78077248 + 48837381 48838228 L1MA3 4352 + 3518 4352 57466 14 0 21 7 24 16 132 1 2 194 0 1 187 33 14 7 3 0 91 1 7 24 4 0 25 2 0 22 2 1 5 1 0 21 6 5 8 1 0 6 11 9 15 chain 49839 chr18 78077248 + 48886894 48887487 SVA_A 1864 - 11 576 59128 526 45 17 22 chain 34280 chr18 78077248 + 48889244 48889754 L1MA2 4263 - 158 655 77238 47 7 0 93 14 12 147 17 14 130 4 3 51 chain 11985 chr18 78077248 + 48898803 48899080 L1MB2 1706 - 29 298 152268 36 5 7 23 1 0 13 99 90 100 chain 66949 chr18 78077248 + 48899102 48899871 L1PA7 6471 - 48 817 49668 769 chain 10788 chr18 78077248 + 48902191 48902314 L1MA2 4263 + 1045 1168 157041 123 chain 31313 chr18 78077248 + 48915228 48915667 MLT2A1 477 - 0 477 81970 51 8 46 127 3 2 40 5 8 21 0 1 11 4 1 169 chain 168095 chr18 78077248 + 48933926 48935890 L1PA7 6471 - 1 1968 22273 4 1 0 151 1 0 45 0 8 158 1 0 483 1 0 488 2 1 629 chain 33833 chr18 78077248 + 48996569 48997008 LTR7 482 - 11 482 77884 8 0 1 29 13 14 52 1 2 56 0 2 12 0 31 209 4 0 55 chain 39356 chr18 78077248 + 48998136 48998571 LTR7Y 441 - 0 441 70243 178 0 3 166 0 3 91 chain 42647 chr18 78077248 + 49034669 49035494 MER9a1 513 - 0 513 65843 329 312 0 184 chain 33460 chr18 78077248 + 49038751 49039216 L1P3 4156 - 294 760 78475 94 0 1 61 0 1 142 36 38 42 5 2 85 chain 22951 chr18 78077248 + 49059925 49060213 AluY 311 + 10 300 115849 122 9 11 157 chain 30278 chr18 78077248 + 49060507 49060903 MLT2A1 477 + 0 397 84001 140 0 1 27 1 5 212 4 0 12 chain 238594 chr18 78077248 + 49098100 49101091 HERVH-int 3825 - 0 3221 16849 317 0 1 7 0 2 160 8 218 31 0 3 458 0 1 113 27 26 387 4 9 83 4 0 229 0 1 309 1 0 13 0 2 10 22 13 206 15 0 447 1 0 82 7 6 35 0 37 15 chain 58064 chr18 78077248 + 49130789 49131561 MER4E1 777 - 10 777 53946 216 12 8 200 1 0 96 0 2 220 2 0 25 chain 197834 chr18 78077248 + 49160087 49162680 MER4-int 2692 + 121 2692 19367 223 1 0 308 0 1 31 0 2 233 0 1 177 14 0 410 10 5 145 0 1 205 1 2 140 1 0 93 0 4 14 0 2 5 1 0 14 0 1 23 0 1 119 21 6 76 1 2 43 1 0 270 1 2 12 chain 33230 chr18 78077248 + 49162688 49163134 MER4A1 472 + 0 460 78831 224 0 21 22 7 8 121 17 9 55 chain 9664 chr18 78077248 + 49171240 49171478 MER2 342 + 54 320 162272 22 1 0 4 56 75 31 1 24 84 24 11 15 chain 17546 chr18 78077248 + 49195932 49196130 L1PA6 6164 - 2 200 134136 198 chain 23847 chr18 78077248 + 49196579 49196885 AluY 311 + 1 302 111195 76 11 4 37 1 0 14 0 1 138 0 2 29 chain 106969 chr18 78077248 + 49202809 49203984 L1PA3long 6157 - 5 1180 34982 1175 chain 42122 chr18 78077248 + 49222305 49222856 MLT2A2 560 + 0 560 66479 195 0 3 5 0 1 107 0 1 117 8 9 34 4 3 75 0 4 6 chain 147655 chr18 78077248 + 49223817 49226261 HERVH48-int 3304 + 196 3031 24930 30 1 0 29 67 48 59 4 0 7 1 0 72 1 0 15 6 0 8 11 5 81 1 0 8 3 2 64 74 5 18 4 0 16 1 0 4 3 1 65 2 0 38 5 4 28 14 602 165 1 0 89 2 1 270 2 0 18 1 0 264 5 3 67 1 0 11 2 1 47 1 0 134 0 1 64 0 1 29 1 0 4 1 0 18 2 1 44 3 1 9 6 5 29 2 0 18 2 0 7 2 0 11 139 103 22 3 0 7 2 0 7 2 0 25 13 5 9 1 0 23 2 0 5 1 0 45 1 0 3 2 0 60 chain 533892 chr18 78077248 + 49226655 49233092 L1PA5 6144 - 0 6144 3718 367 327 0 473 0 6 713 0 1 140 0 1 1247 7 1 25 2 0 2018 0 3 321 0 17 88 3 0 339 0 17 367 chain 5745 chr18 78077248 + 49233189 49233255 HERVH48-int 3304 + 3086 3152 187693 66 chain 555625 chr18 78077248 + 49267001 49273035 L1PA2 6032 + 2 6030 758 480 2 1 1364 7 4 2211 2 0 1968 chain 16955 chr18 78077248 + 49308080 49308278 MER107 203 - 0 203 135715 26 0 5 172 chain 26510 chr18 78077248 + 49309308 49309600 L1PA3long 6157 + 5865 6157 98010 292 chain 28528 chr18 78077248 + 49315541 49315920 THE1C 375 - 0 375 91059 25 1 0 230 16 13 107 chain 18807 chr18 78077248 + 49317430 49317642 L1PA4 6152 + 5940 6152 130656 212 chain 21611 chr18 78077248 + 49329781 49330075 AluY 311 + 3 286 121726 84 0 1 35 1 0 10 2 0 66 16 8 30 1 0 49 chain 266277 chr18 78077248 + 49355136 49358074 L1PA4 6152 + 3209 6151 15377 1142 0 4 1796 chain 17826 chr18 78077248 + 49358673 49358859 AluYa5 310 + 124 310 133315 186 chain 53721 chr18 78077248 + 49362209 49362858 PABL_A 660 - 0 660 56528 29 0 1 20 0 11 105 1 0 494 chain 184638 chr18 78077248 + 49372081 49374652 L1PB1 5432 - 41 2564 20533 21 1 0 22 26 21 18 26 15 9 3 4 44 1 0 18 7 6 44 2 0 11 4 0 12 11 8 24 5 0 7 1 4 299 1 0 96 2 3 77 3 0 802 0 1 91 42 14 28 1 6 402 0 2 19 0 1 38 7 9 4 0 1 5 0 1 68 1 0 268 chain 1192 chr18 78077248 + 49390381 49390408 LTR12C 1709 - 672 699 153456 27 chain 3236 chr18 78077248 + 49390408 49390445 LTR12C 1709 - 1018 1055 189115 37 chain 11760 chr18 78077248 + 49390511 49390646 LTR12C 1709 - 642 777 153221 135 chain 84412 chr18 78077248 + 49402732 49403707 L1PA5 6144 + 5174 6144 41753 120 2 0 40 1 0 553 1 0 198 1 0 59 chain 72372 chr18 78077248 + 49413629 49414430 L1PA5 6144 - 1 804 47312 573 0 2 228 chain 19963 chr18 78077248 + 49419910 49420156 MER41-int 2638 - 2 252 127264 100 0 4 146 chain 24066 chr18 78077248 + 49455224 49455571 THE1B 368 + 7 368 109951 88 9 19 55 1 0 28 0 3 9 1 5 18 1 0 7 2 1 128 chain 109672 chr18 78077248 + 49455571 49457133 THE1B-int 1605 + 0 1586 34286 12 3 5 98 52 0 159 0 6 115 0 64 222 0 1 13 51 62 97 1 2 137 0 1 173 4 5 5 9 0 80 2 0 6 0 2 134 1 0 104 1 0 83 chain 406453 chr18 78077248 + 49493285 49497856 L1PA4 6152 - 9 4579 9897 147 2 0 1367 1 0 477 0 3 128 1 2 816 3 1 37 4 3 757 1 2 830 chain 46482 chr18 78077248 + 49501045 49501648 L1PB1 5432 - 719 1339 61615 6 0 2 26 0 1 52 4 1 5 0 1 97 0 5 187 0 11 226 chain 38745 chr18 78077248 + 49501666 49502381 L1PB1 5432 + 4745 5424 71086 50 8 0 8 1 9 185 1 0 85 37 35 17 1 0 7 4 3 12 2 0 3 2 0 9 2 0 38 3 2 11 1 0 17 1 0 43 2 1 16 1 0 4 2 0 8 9 0 19 2 0 5 1 0 16 2 0 11 0 8 8 16 7 9 1 0 13 1 0 14 1 0 6 chain 7803 chr18 78077248 + 49503383 49503481 Tigger3a 397 - 81 179 172294 98 chain 24321 chr18 78077248 + 49512123 49512385 AluYb8 318 - 13 275 108541 262 chain 35196 chr18 78077248 + 49620528 49620942 L1PA7 6471 - 797 1214 75495 50 0 3 364 chain 65362 chr18 78077248 + 49620942 49621714 L1PA7 6471 + 5682 6458 50394 16 0 2 613 0 1 14 0 1 129 chain 19864 chr18 78077248 + 49630718 49630988 AluSc8 310 + 0 271 127608 48 6 5 80 11 13 125 chain 42181 chr18 78077248 + 49633338 49633874 MLT2A2 560 - 0 560 66421 6 0 4 137 0 11 34 0 9 48 1 0 95 0 1 215 chain 5810 chr18 78077248 + 49637448 49637521 MLT1A 405 + 272 345 187044 73 chain 8135 chr18 78077248 + 49638707 49638839 MSTB 430 - 242 374 170306 34 10 9 18 4 5 66 chain 9058 chr18 78077248 + 49647315 49647528 MER30 238 - 8 238 165266 36 3 0 34 45 66 55 23 22 17 chain 26751 chr18 78077248 + 49670296 49670649 THE1B 368 + 0 368 97160 44 5 20 108 2 1 25 0 2 94 1 0 74 chain 37095 chr18 78077248 + 49670834 49671255 L1PA4 6152 - 6 428 73388 107 0 1 314 chain 22501 chr18 78077248 + 49671255 49671517 L1P1 4361 + 2643 2904 118023 149 5 4 108 chain 121361 chr18 78077248 + 49671997 49673463 L1PA7 6471 - 1 1474 30576 154 1 8 83 0 2 513 15 10 76 0 3 624 chain 159384 chr18 78077248 + 49684844 49686695 L1PA5 6144 - 0 1857 23419 189 6 5 156 0 4 496 1 0 943 0 4 60 chain 28313 chr18 78077248 + 49768186 49768520 L1PA7 6471 - 5 338 91891 113 4 3 217 chain 21856 chr18 78077248 + 49781563 49781963 THE1C 375 + 0 375 120798 54 44 16 15 0 1 23 24 25 45 0 2 13 18 12 34 0 1 5 1 0 28 0 5 96 chain 50997 chr18 78077248 + 49792441 49793287 L1PB1 5432 + 4605 5420 58312 23 3 0 50 1 2 28 0 1 98 8 9 179 1 2 5 1 0 101 1 0 14 0 1 16 1 0 13 1 0 9 18 12 52 2 1 15 2 1 44 1 0 15 3 0 8 13 4 19 24 19 24 1 0 21 1 0 13 1 0 16 chain 43353 chr18 78077248 + 49806224 49806706 L1PA5 6144 - 3 485 64986 482 chain 13424 chr18 78077248 + 49828400 49828631 L1PB1 5432 - 106 314 146605 15 9 0 15 3 0 15 1 0 44 1 0 15 3 2 53 2 0 9 4 0 10 2 1 5 1 0 24 chain 28031 chr18 78077248 + 49832345 49832777 MLT2A1 477 + 0 477 92888 60 0 1 82 0 1 16 12 16 11 0 1 54 1 2 80 3 2 28 38 78 5 2 0 40 chain 37872 chr18 78077248 + 49833427 49833855 L1PA5 6144 + 5712 6141 72316 219 0 1 209 chain 123246 chr18 78077248 + 49840697 49842452 L1PA6 6164 - 2 1448 29960 368 308 0 396 1 0 351 1 0 4 0 1 326 chain 22426 chr18 78077248 + 49851666 49851962 AluSp 311 + 0 305 118353 46 1 11 208 9 8 32 chain 32356 chr18 78077248 + 49854282 49854715 MER57A1 433 - 7 433 80267 146 19 12 268 chain 22410 chr18 78077248 + 49876734 49877041 L1PA7 6471 + 6151 6465 118442 141 4 1 57 8 19 83 0 1 6 2 0 6 chain 108180 chr18 78077248 + 49892563 49893837 LTR12C 1709 - 0 1709 34657 54 0 233 194 0 4 107 3 1 5 1 0 74 0 200 697 0 1 139 chain 3204 chr18 78077248 + 49915576 49915618 MER20 218 + 41 84 220876 36 0 1 6 chain 4485 chr18 78077248 + 49925245 49925302 L1PB1 5432 + 5349 5404 200966 21 1 0 21 1 0 13 chain 57597 chr18 78077248 + 49926778 49927467 L1PA7 6471 + 5774 6453 54189 362 0 1 255 17 6 55 chain 78263 chr18 78077248 + 49931030 49931884 L1PA2 6032 - 1 853 44346 12 2 0 840 chain 88952 chr18 78077248 + 49931884 49932851 L1PA2 6032 + 4210 5177 40023 967 chain 194634 chr18 78077248 + 49942095 49944301 L1P1 4361 - 1068 3278 19612 7 0 1 113 0 1 958 0 1 463 0 1 665 chain 75557 chr18 78077248 + 49993432 49994344 L1PA7 6471 - 14 925 45742 46 5 6 274 1 0 511 1 0 74 chain 2940 chr18 78077248 + 50048862 50048896 MER53 195 - 6 40 226334 34 chain 80836 chr18 78077248 + 50091578 50092511 L1PA7 6471 - 367 1303 43254 480 0 3 453 chain 30233 chr18 78077248 + 50092532 50092896 L1PA7 6471 + 6107 6468 84103 185 1 0 5 2 0 171 chain 172623 chr18 78077248 + 50112723 50114792 HERVL-int 5654 - 569 2641 21749 346 0 1 1287 0 1 261 11 12 164 chain 26825 chr18 78077248 + 50156040 50156346 AluY 311 + 2 309 96892 130 0 1 176 chain 390727 chr18 78077248 + 50163296 50168829 L1PB1 5432 + 58 5420 10429 27 0 1 376 5 10 333 11 10 5 0 1 572 1 0 9 2 0 5 25 11 183 0 5 12 9 10 24 0 9 132 2 0 33 32 7 156 38 39 38 0 45 314 1 0 4 0 1 65 7 6 40 0 1 236 28 0 19 0 1 4 33 5 35 1 0 327 1 5 101 0 1 460 3 1 137 1 0 481 0 2 84 0 1 173 9 6 93 2 1 97 4 3 25 1 2 204 0 1 5 1 0 51 119 11 24 1 0 9 16 11 11 2 0 51 2 1 16 16 15 28 1 0 14 3 0 19 31 19 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 24383 chr18 78077248 + 50176343 50176648 AluSp 311 - 7 311 108179 176 1 0 128 chain 6377 chr18 78077248 + 50211773 50212027 MSTB1 431 + 0 243 182195 17 2 1 31 26 17 28 88 85 15 14 16 33 chain 21017 chr18 78077248 + 50287407 50287696 THE1B 368 - 0 303 123858 49 5 13 11 9 16 111 1 0 103 chain 60314 chr18 78077248 + 50305531 50306271 L1PA7 6471 - 6 747 52674 309 0 1 431 chain 43590 chr18 78077248 + 50313655 50314448 HUERS-P3b-int 2065 - 1337 2052 64698 41 4 0 64 1 37 7 36 0 136 0 5 95 112 37 7 4 0 83 1 0 38 0 2 6 0 1 8 14 16 51 4 0 81 chain 226781 chr18 78077248 + 50390897 50394100 L1PA7 6471 - 11 2849 17492 27 0 9 10 19 0 17 2 0 31 12 6 36 0 1 9 1 0 65 0 6 104 312 0 398 13 3 35 4 2 77 0 3 99 49 1 104 0 5 100 1 0 209 0 1 145 0 2 132 0 4 143 0 4 151 0 2 7 0 1 253 0 1 420 4 1 214 chain 26867 chr18 78077248 + 50477668 50478005 L1PA8 5853 - 19 349 96753 74 1 0 19 2 1 47 1 0 11 1 0 74 2 0 44 1 0 60 chain 14927 chr18 78077248 + 50487499 50487672 L1PA4 6152 + 5979 6152 141552 173 chain 127779 chr18 78077248 + 50488064 50489481 L1PA3long 6157 + 4732 6157 28622 578 0 4 788 0 4 51 chain 4178 chr18 78077248 + 50526167 50526548 MLT1C 463 + 27 436 204852 26 9 13 24 293 317 29 chain 6750 chr18 78077248 + 50529030 50529108 L1PA4 6152 - 0 79 179316 8 0 1 70 chain 66789 chr18 78077248 + 50539154 50540071 L1PA8 5853 + 4901 5847 49739 105 2 5 54 5 7 86 0 1 174 0 17 18 0 7 146 0 3 38 1 0 43 5 3 49 0 4 16 14 11 52 2 1 19 1 0 87 chain 24327 chr18 78077248 + 50540671 50540950 L1PA4 6152 - 18 290 108510 123 7 0 149 chain 7438 chr18 78077248 + 50544447 50544541 L1PA7 6471 + 6368 6461 174529 84 1 0 9 chain 127714 chr18 78077248 + 50567319 50568942 L1PA7 6471 - 914 2568 28640 160 1 22 220 0 2 25 3 0 135 7 8 36 1 0 42 12 13 162 2 0 53 0 8 86 6 7 4 1 0 12 0 3 49 0 1 606 chain 70552 chr18 78077248 + 50568945 50569835 L1PA7 6471 + 5572 6465 48134 51 5 9 308 8 0 296 1 5 178 0 3 43 chain 17207 chr18 78077248 + 50575407 50576154 L1PREC2 3366 - 123 724 135019 25 5 0 22 240 148 35 9 7 35 161 123 5 0 3 27 15 14 47 2 0 4 6 0 37 8 5 64 chain 23080 chr18 78077248 + 50593110 50593498 MSTA 426 - 21 426 115242 96 1 0 65 41 38 58 33 54 94 chain 173204 chr18 78077248 + 50612995 50614919 L1PA3long 6157 - 22 1946 21693 1924 chain 13288 chr18 78077248 + 50614935 50615091 L1P1 4361 + 3131 3288 147135 47 0 1 109 chain 25174 chr18 78077248 + 50616791 50617097 AluY 311 + 10 311 103883 270 6 1 30 chain 18223 chr18 78077248 + 50630599 50630893 THE1B 368 + 0 299 132275 17 2 0 16 13 28 18 18 12 16 0 1 64 2 1 27 2 0 99 chain 80220 chr18 78077248 + 50636911 50637779 L1PA3long 6157 + 5289 6157 43496 868 chain 23452 chr18 78077248 + 50675235 50675530 AluSg7 307 - 10 307 113375 18 5 6 140 1 2 131 chain 5714 chr18 78077248 + 50684335 50684464 L1MA3 4352 + 4201 4325 187977 26 10 10 20 3 1 24 1 0 6 1 0 17 10 9 11 chain 63264 chr18 78077248 + 50694330 50695098 L1PA7 6471 + 5710 6468 51337 20 0 1 17 14 9 380 1 0 177 6 1 153 chain 352202 chr18 78077248 + 50699876 50703713 L1PA2 6032 + 2192 6032 11543 874 0 4 2812 1 0 150 chain 23469 chr18 78077248 + 50716293 50716582 AluSp 311 - 9 298 113274 289 chain 24125 chr18 78077248 + 50765295 50765565 L1PA5 6144 + 5865 6135 109612 270 chain 8525 chr18 78077248 + 50768289 50768390 L1P1 4361 + 4160 4261 168162 101 chain 535467 chr18 78077248 + 50781586 50787721 L1PA4 6152 - 0 6152 3526 263 0 1 207 0 2 640 0 1 197 0 1 899 1 2 215 1 3 32 1 0 1159 0 3 207 1 0 869 0 8 1443 chain 14812 chr18 78077248 + 50787977 50788157 AluYc3 301 - 109 290 141906 77 1 2 102 chain 26529 chr18 78077248 + 50805268 50805556 L1PA4 6152 - 486 774 97937 288 chain 41805 chr18 78077248 + 50805556 50806019 L1PA4 6152 + 5680 6143 66890 463 chain 25010 chr18 78077248 + 50838401 50838739 AluY 311 + 4 311 104735 125 28 0 10 7 4 168 chain 301522 chr18 78077248 + 50841344 50845115 L1PA7 6471 - 10 3766 13344 329 0 1 416 0 3 9 2 0 35 9 5 42 1 0 71 3 2 161 0 14 305 0 1 112 5 0 265 10 22 315 0 3 126 49 0 14 1 14 282 0 1 99 1 5 66 16 8 182 0 4 52 1 0 439 1 0 187 0 1 165 chain 59657 chr18 78077248 + 50845150 50845881 L1PA7 6471 + 1973 2699 53015 660 5 0 66 chain 2993 chr18 78077248 + 50872084 50872146 L1MEf 1413 - 430 485 225150 4 1 0 30 14 8 13 chain 174000 chr18 78077248 + 50880141 50882147 L1PA5 6144 - 0 2007 21592 147 5 12 709 1 5 32 0 1 136 17 0 74 0 1 413 0 1 265 0 4 207 chain 29515 chr18 78077248 + 50891386 50891733 L1PA5 6144 - 89 438 86584 248 0 2 99 chain 29322 chr18 78077248 + 50925992 50926303 AluYa5 310 + 0 310 87420 132 1 0 178 chain 28281 chr18 78077248 + 50966133 50966434 AluYa5 310 - 10 310 92000 174 1 0 126 chain 118003 chr18 78077248 + 50986670 50987980 L1PA3long 6157 - 17 1328 31803 321 0 1 989 chain 33616 chr18 78077248 + 50988594 50989079 MER1A 529 + 42 521 78218 401 60 54 24 chain 22049 chr18 78077248 + 50996598 50996889 THE1D-int 1627 - 1312 1604 120027 33 0 2 241 2 1 15 chain 325902 chr18 78077248 + 51017742 51022259 L1PA7 6471 - 10 4783 12351 139 24 46 100 0 13 200 0 14 4 0 1 316 1 5 42 6 2 81 0 1 19 0 5 336 6 1 9 0 5 108 1 0 21 19 4 78 0 1 183 3 0 308 2 0 123 0 559 29 0 1 58 0 1 95 0 4 74 64 0 381 13 16 101 12 21 66 0 4 160 1 0 90 1 2 60 0 2 69 0 9 233 1 0 95 315 0 34 0 1 130 8 0 86 1 10 160 6 11 20 0 1 25 chain 71980 chr18 78077248 + 51022267 51023234 L1P3 4156 + 738 1684 47483 239 17 15 47 14 21 153 4 0 93 4 0 88 0 3 145 21 0 142 chain 533233 chr18 78077248 + 51037824 51043813 L1PA3long 6157 + 6 6142 3818 146 0 1 241 5 0 179 0 4 130 0 1 69 1 129 1046 1 0 107 5 4 284 0 1 361 0 5 72 3 10 339 0 5 31 2 0 775 0 1 1357 1 4 834 chain 124765 chr18 78077248 + 51048763 51050282 L1PA7 6471 + 4934 6469 29458 262 5 8 77 0 1 330 3 0 6 3 5 77 0 2 257 3 9 329 1 2 48 0 4 118 chain 4308 chr18 78077248 + 51050374 51050521 L1MA8 2339 + 2122 2263 203116 35 2 3 27 64 58 11 1 0 7 chain 28462 chr18 78077248 + 51062575 51062879 AluYa5 310 + 0 303 91330 97 1 0 206 chain 28672 chr18 78077248 + 51063909 51064314 MLT2A1 477 - 76 477 90438 16 13 9 53 1 0 127 5 1 22 1 5 25 0 1 142 chain 15634 chr18 78077248 + 51076736 51077076 L1PB1 5432 + 5116 5424 139481 22 1 0 9 16 11 9 2 0 53 2 1 16 1 0 44 1 0 20 20 8 16 29 24 21 1 0 21 1 0 13 1 0 16 1 0 4 chain 9438 chr18 78077248 + 51086764 51086884 MER57F 435 - 315 435 163373 120 chain 9732 chr18 78077248 + 51094665 51094789 MER85 139 - 1 135 161931 39 0 10 85 chain 33360 chr18 78077248 + 51112470 51113067 L1MA3 4352 + 3764 4332 78635 326 106 84 62 1 0 18 8 6 22 1 0 6 1 0 21 6 5 14 1 0 4 chain 61400 chr18 78077248 + 51117465 51118151 L1PA4 6152 - 0 687 52150 148 0 1 538 chain 3143 chr18 78077248 + 51123854 51123892 MER5A1 166 + 98 135 222116 27 1 0 10 chain 26538 chr18 78077248 + 51126515 51126936 LTR7B 505 - 11 505 97892 40 18 17 48 0 1 26 1 0 41 11 99 27 35 11 69 0 10 105 chain 36185 chr18 78077248 + 51156326 51156830 LTR10F 562 - 0 562 74651 59 38 44 126 1 0 102 3 0 52 0 56 123 chain 273848 chr18 78077248 + 51158497 51162032 L1PA6 6164 + 2812 6160 14981 45 0 2 281 0 1 293 0 1 71 1 5 829 0 1 125 0 3 174 1 0 343 0 2 5 1 0 4 1 0 194 0 1 123 0 3 86 3 6 245 0 2 169 207 0 334 chain 13850 chr18 78077248 + 51161514 51161696 L1PA6 6164 + 5976 6162 145064 35 0 7 34 1 0 102 2 0 8 chain 24165 chr18 78077248 + 51162101 51162403 MER4E1 777 + 453 758 109405 85 10 13 207 chain 21069 chr18 78077248 + 51166513 51166767 AluY 311 + 0 260 123664 32 0 5 95 0 1 127 chain 270405 chr18 78077248 + 51166824 51170160 L1PA7 6471 + 3145 6469 15171 381 1 2 392 1 0 74 27 12 517 0 4 54 0 1 309 4 10 346 3 7 364 7 10 97 15 0 181 1 0 139 0 1 394 2 3 15 1 0 11 chain 37368 chr18 78077248 + 51182997 51183439 L1PA5 6144 + 5719 6144 73006 357 18 1 67 chain 19839 chr18 78077248 + 51184681 51184983 L1PA8 5853 - 1 298 127683 92 2 0 17 7 6 49 2 1 9 1 0 5 15 17 48 2 0 31 0 1 14 1 0 7 chain 31240 chr18 78077248 + 51193632 51193974 L1PA3long 6157 + 5805 6147 82099 342 chain 44689 chr18 78077248 + 51198004 51198513 MER9a1 513 + 0 513 63389 490 5 9 14 chain 22270 chr18 78077248 + 51225740 51226029 L1PA8 5853 + 5564 5848 119033 45 2 0 70 1 0 61 2 1 19 1 0 88 chain 10319 chr18 78077248 + 51233187 51233303 L1PA5 6144 - 2 118 159036 116 chain 25350 chr18 78077248 + 51242380 51242724 L1PA8 5853 - 3 348 102952 88 1 0 21 2 1 47 1 0 14 2 1 25 0 8 37 6 4 42 1 0 57 chain 36549 chr18 78077248 + 51256684 51257077 L1PA2 6032 - 0 393 74169 393 chain 46836 chr18 78077248 + 51263776 51264387 PRIMA4_LTR 623 + 13 623 61349 121 3 0 8 0 3 43 4 0 73 1 0 7 1 4 38 0 1 21 2 1 58 0 1 231 chain 3186 chr18 78077248 + 51265444 51265505 L1MA5A 2387 - 12 69 221200 19 1 0 16 1 0 6 6 4 12 chain 10311 chr18 78077248 + 51268327 51268486 MER30 238 + 25 199 159081 83 4 0 6 11 30 55 chain 7003 chr18 78077248 + 51295093 51295270 L1PA13 3608 + 3361 3522 177447 35 13 11 37 2 0 4 2 0 20 1 0 7 37 29 14 1 0 4 chain 445904 chr18 78077248 + 51330950 51336694 L1PA8 5853 + 108 5826 8877 138 1 0 56 12 0 48 0 1 73 0 1 184 3 6 52 6 7 214 1 3 49 0 2 5 23 15 193 0 4 182 1 3 742 1 0 197 1 0 116 5 4 977 2 5 6 15 0 142 0 1 38 4 5 65 0 1 16 0 2 92 0 1 108 2 1 471 0 1 182 0 5 13 8 13 312 0 1 272 17 1 387 2 0 41 1 0 45 3 1 63 24 24 48 1 0 17 2 1 65 chain 334464 chr18 78077248 + 51347291 51351417 L1PA5 6144 + 0 6144 12040 128 1 15 10 23 24 33 0 1 69 1 0 29 1 0 15 0 1 406 0 1 79 0 17 341 9 0 56 0 1975 75 3 0 656 0 1 166 4 15 120 0 1 69 6 4 35 0 8 36 1 0 230 14 16 685 4 5 87 1 0 367 2 1 49 0 1 303 1 3 11 chain 6126 chr18 78077248 + 51353958 51354181 MSTA 426 + 16 292 184218 30 6 22 28 32 56 25 74 87 28 chain 521517 chr18 78077248 + 51354752 51360854 L1PA5 6144 - 0 6144 5007 9 2 0 358 2 1 367 1 0 107 0 5 18 0 4 128 0 5 148 0 1 503 0 4 554 0 1 684 0 4 672 2 1 17 12 0 195 1 0 41 0 1 65 0 2 637 0 1 160 1 0 569 0 11 760 0 22 89 chain 29870 chr18 78077248 + 51367156 51367472 AluYb8 318 + 0 316 85211 316 chain 26514 chr18 78077248 + 51384275 51384570 L1PA2 6032 + 5732 6032 97994 280 1 6 14 chain 3481 chr18 78077248 + 51394511 51394550 MER33 330 + 249 288 215645 39 chain 32511 chr18 78077248 + 51404946 51405325 L1PA8A 6298 - 358 737 80005 379 chain 221518 chr18 78077248 + 51405337 51408564 L1PA10 4194 - 691 3940 17781 35 0 4 13 5 8 498 1 5 126 36 39 62 0 5 7 35 38 14 22 27 107 3 6 67 0 2 156 0 4 54 0 4 197 6 10 47 0 2 23 1 0 183 3 2 259 7 18 357 0 2 152 1 2 287 1 0 5 0 1 77 1 0 71 3 0 8 18 21 14 4 2 79 1 0 5 1 0 3 7 0 8 26 33 19 2 0 16 51 25 7 1 0 16 2 0 17 chain 27211 chr18 78077248 + 51442786 51443089 AluYf4 310 - 7 310 95559 303 chain 2845 chr18 78077248 + 51468590 51468683 HERVL18-int 2198 - 0 95 227943 27 48 50 18 chain 20695 chr18 78077248 + 51481692 51482153 L1PB2 3958 + 3390 3837 124985 36 57 48 64 8 7 34 0 1 5 1 0 8 1 2 23 1 0 59 15 14 62 2 0 21 47 46 17 chain 91022 chr18 78077248 + 51488628 51489695 MER11C 1089 + 0 1073 39281 24 0 4 310 0 1 653 0 1 80 chain 14398 chr18 78077248 + 51497332 51497488 L1PA2 6032 + 5870 6026 143211 156 chain 518527 chr18 78077248 + 51500137 51506210 L1PA5 6144 - 1 6144 5328 6 3 0 226 0 4 612 7 11 652 0 1 644 0 3 78 0 1 228 2 0 85 22 12 75 2 1 5 0 4 240 7 12 21 24 9 61 0 2 609 1 0 235 1 0 524 1 51 313 0 7 259 0 3 98 0 2 97 0 4 120 0 17 282 4 0 529 chain 57191 chr18 78077248 + 51562829 51563637 L1PA8 5853 - 0 808 54413 93 1 0 19 2 1 50 15 12 60 7 9 45 1 0 12 0 1 14 0 1 20 0 1 214 0 1 119 15 14 81 1 2 39 chain 5091 chr18 78077248 + 51564223 51564348 L1MC1 2226 - 43 149 194164 31 1 0 16 24 13 19 2 0 21 5 0 6 chain 29191 chr18 78077248 + 51576320 51576631 AluYa5 310 - 0 310 88097 217 1 0 93 chain 94110 chr18 78077248 + 51591759 51592790 L1PA3long 6157 + 5125 6157 38322 778 0 1 253 chain 41273 chr18 78077248 + 51596812 51597372 MER41A 554 + 0 554 67570 94 14 13 105 7 4 13 1 2 87 2 0 3 1 0 233 chain 22066 chr18 78077248 + 51599100 51599361 L1PA7 6471 - 5 267 119939 8 0 1 253 chain 17699 chr18 78077248 + 51605236 51605503 L1PB4 2604 - 52 312 133705 48 3 4 110 8 4 7 4 0 87 chain 110659 chr18 78077248 + 51608257 51609874 THE1C-int 1605 + 25 1605 34044 304 10 16 95 91 17 229 26 28 31 0 9 360 10 6 5 1 0 113 18 38 71 0 1 26 8 11 4 0 1 215 chain 9240 chr18 78077248 + 51612809 51613056 MSTA 426 - 0 179 164350 56 0 1 49 119 50 23 chain 25298 chr18 78077248 + 51619773 51620171 MSTA 426 - 19 426 103236 157 24 0 8 18 38 25 8 20 131 1 2 26 chain 7440 chr18 78077248 + 51658005 51658099 LTR23 429 + 302 403 174515 43 0 7 51 chain 5164 chr18 78077248 + 51664432 51664501 L1MB3 1562 - 8 76 193405 31 1 0 37 chain 28986 chr18 78077248 + 51737236 51737540 AluYa5 310 - 6 310 89059 304 chain 35269 chr18 78077248 + 51755010 51755489 MER84 505 + 12 497 75833 148 10 12 155 0 1 4 0 10 111 7 0 44 chain 2927 chr18 78077248 + 51769807 51769957 MLT1E 632 - 452 573 226564 25 98 70 7 1 0 19 chain 25083 chr18 78077248 + 51770047 51770349 AluSq2 311 - 0 302 104391 177 0 1 104 1 0 20 chain 21481 chr18 78077248 + 51776921 51777207 AluSc8 310 + 11 302 122216 119 14 19 153 chain 133859 chr18 78077248 + 51815762 51817345 L1PA6 6164 + 4568 6153 27249 1432 11 13 140 chain 512902 chr18 78077248 + 51830137 51836588 L1PA6 6164 - 2 6161 5889 157 5 6 172 0 1 1357 0 3 284 315 0 389 0 1 549 24 9 43 0 1 184 4 0 48 0 10 545 0 4 74 1 0 156 0 1 519 0 1 179 43 0 11 1 44 597 1 18 124 1 10 45 7 8 102 2 1 105 11 5 199 1 0 4 0 1 192 chain 16496 chr18 78077248 + 51862638 51862890 THE1D 372 + 0 332 136937 67 18 19 37 10 89 120 chain 167416 chr18 78077248 + 51868868 51870963 SVA_F 1814 + 9 1814 22348 876 301 0 62 0 15 39 1 0 10 1 0 159 1 0 17 1 0 627 chain 16093 chr18 78077248 + 51869745 51870045 SVA_F 1814 + 888 1125 78788 58 79 16 163 chain 6927 chr18 78077248 + 51869804 51869882 SVA_F 1814 + 1011 1089 126115 78 chain 170583 chr18 78077248 + 51876249 51878763 L1PB2 3958 - 120 2678 21983 26 0 20 17 2 1 19 2 0 76 5 4 57 1 0 73 1 0 58 4 5 4 1 0 27 2 0 12 2 0 65 5 0 13 1 0 10 0 1 41 2 0 90 4 0 8 4 8 279 4 3 63 13 14 194 0 1 79 1 4 79 1 3 94 7 9 15 0 5 99 11 35 257 0 2 99 2 0 91 0 8 10 13 0 49 0 7 41 6 7 8 0 1 50 0 1 17 5 4 16 24 20 45 2 1 77 1 0 73 0 2 29 10 14 18 chain 21986 chr18 78077248 + 51896396 51896663 AluY 311 + 32 299 120284 91 1 0 9 0 1 166 chain 243302 chr18 78077248 + 51908792 51912442 MER61-int 3695 - 4 3677 16600 8 0 3 23 6 0 305 8 6 90 0 1 5 12 11 69 1 0 6 10 14 137 101 112 24 38 35 10 0 1 61 1 6 48 0 5 96 17 18 5 3 0 37 0 3 67 0 1 174 1 2 168 1 0 10 9 7 140 6 7 184 9 8 106 0 1 4 0 1 133 8 15 92 1 0 37 0 2 34 1 2 13 1 0 127 0 4 18 3 9 49 0 16 71 0 6 86 3 5 90 10 8 111 1 0 27 0 28 47 1 0 229 16 2 17 0 1 42 43 36 30 14 13 62 11 0 7 32 5 4 0 1 4 1 0 24 3 0 83 0 1 35 1 0 28 chain 63022 chr18 78077248 + 51912965 51913734 LTR17 781 + 2 773 51434 172 1 2 151 1 0 99 4 5 301 0 1 40 chain 396815 chr18 78077248 + 51926101 51930518 L1PA4 6152 - 1 4420 10210 2980 1 0 1053 8 11 375 chain 106195 chr18 78077248 + 51939413 51940601 L1PA3long 6157 - 0 1190 35212 396 0 3 657 1 0 134 chain 36442 chr18 78077248 + 51952966 51953351 L1HS 6032 - 3596 3981 73775 385 chain 336911 chr18 78077248 + 51953351 51956951 L1HS 6032 + 2432 6032 11972 3600 chain 19798 chr18 78077248 + 51972237 51972512 L1PA8 5853 - 0 263 127818 93 1 0 19 2 1 47 1 0 14 7 0 69 3 1 19 chain 126453 chr18 78077248 + 52017338 52018707 L1PA3long 6157 - 0 1369 28956 1369 chain 7667 chr18 78077248 + 52025332 52025470 MLT1A1 405 - 40 176 173130 73 7 7 10 17 15 31 chain 17778 chr18 78077248 + 52028061 52028289 MER82 654 - 382 615 133487 80 0 5 148 chain 84237 chr18 78077248 + 52036490 52037855 L1MA1 4479 + 2789 4142 41804 12 1 3 58 1 0 10 5 4 40 10 9 23 11 10 27 2 0 163 10 9 18 4 0 54 45 38 59 0 1 65 1 0 50 0 9 68 2 0 196 2 1 23 2 0 31 1 0 47 10 9 20 2 0 13 1 0 19 2 9 36 6 7 17 1 0 5 3 0 52 5 6 68 1 0 29 0 1 34 chain 25644 chr18 78077248 + 52213398 52213777 THE1C 375 + 0 374 101520 125 3 0 101 34 33 24 7 6 85 chain 104170 chr18 78077248 + 52213778 52215227 THE1C-int 1605 + 0 1591 35699 111 0 54 162 0 6 112 0 7 150 1 0 41 12 7 42 0 8 52 6 0 196 1 0 4 5 6 263 3 20 52 16 20 17 24 82 179 chain 492061 chr18 78077248 + 52236752 52242343 L1PA5 6144 - 5 6141 7264 838 0 4 22 0 4 649 1 0 2209 1 2 430 0 12 1353 0 525 88 chain 60100 chr18 78077248 + 52265734 52266492 MER4E 760 + 0 760 52771 22 1 2 127 0 9 10 13 6 57 1 0 4 1 2 371 1 0 150 chain 3735 chr18 78077248 + 52271304 52271345 L1PB 1623 + 670 711 211377 41 chain 51619 chr18 78077248 + 52271356 52272033 HERVK22-int 3844 + 940 1618 57882 287 26 25 298 0 2 66 chain 77841 chr18 78077248 + 52272053 52273191 HERVK22-int 3844 - 0 3844 44600 85 12 11 84 96 2800 357 7 11 34 0 1 153 1 2 270 3 0 36 chain 6384 chr18 78077248 + 52276954 52277032 L1P5 443 + 231 314 182147 72 0 5 6 chain 7779 chr18 78077248 + 52278634 52278773 L1PB1 5432 + 5118 5247 172424 20 1 0 6 1 0 13 18 12 50 1 0 18 1 0 10 chain 22375 chr18 78077248 + 52300932 52301248 L1PA8A 6298 + 5997 6291 118607 73 23 0 130 1 2 89 chain 49943 chr18 78077248 + 52301676 52302256 L1PA3long 6157 - 0 577 59061 203 13 0 135 0 1 183 0 9 46 chain 8541 chr18 78077248 + 52310859 52310966 MER47A 366 - 189 296 168059 107 chain 22505 chr18 78077248 + 52320052 52320320 L1PA7 6471 - 2 270 118009 268 chain 553872 chr18 78077248 + 52331437 52337560 L1PA3long 6157 - 0 6151 964 147 0 1 42 0 1 1444 0 15 1061 0 3 272 2 1 321 0 10 931 0 1 447 2 1 1147 1 0 306 chain 25338 chr18 78077248 + 52356102 52356390 AluY 311 + 10 298 103031 288 chain 19925 chr18 78077248 + 52365433 52365655 L1PA4 6152 + 5931 6152 127378 216 1 0 5 chain 4640 chr18 78077248 + 52447034 52447106 MLT1B 390 - 77 150 199189 24 9 10 39 chain 123696 chr18 78077248 + 52486875 52488737 L1PA4 6152 - 22 1996 29813 133 0 1 184 0 1 502 1 5 556 0 126 28 414 394 44 chain 33639 chr18 78077248 + 52488279 52488693 L1PA4 6152 + 4151 4565 59276 414 chain 12351 chr18 78077248 + 52488737 52488889 L1PA4 6152 + 4589 4741 59276 152 chain 18455 chr18 78077248 + 52535483 52535726 MSTA 426 + 181 414 131628 28 10 0 205 chain 9545 chr18 78077248 + 52583982 52584340 THE1B 368 + 0 366 162860 15 2 0 32 32 39 19 129 138 6 5 0 42 29 28 47 chain 25552 chr18 78077248 + 52593405 52593790 THE1C 375 - 0 375 101974 163 12 0 71 1 11 10 9 6 80 12 7 27 chain 46908 chr18 78077248 + 52661742 52662518 L1PB1 5432 - 19 721 61301 9 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 2 1 7 11 0 18 2 1 44 1 0 16 2 1 53 22 20 9 1 0 24 61 11 35 0 1 215 0 1 140 chain 6876 chr18 78077248 + 52662531 52662608 L1PB1 5432 + 4636 4713 178389 77 chain 88261 chr18 78077248 + 52709661 52710767 L1PA10 4194 + 3048 4150 40279 75 3 1 396 0 1 560 0 1 24 2 1 9 3 0 34 chain 10771 chr18 78077248 + 52718866 52719093 MSTA 426 + 163 408 157104 40 24 26 7 3 0 53 36 56 17 1 0 46 chain 3503 chr18 78077248 + 52724415 52724459 MER53 195 + 24 68 215314 44 chain 52595 chr18 78077248 + 52822022 52822595 L1PA5 6144 - 2612 3185 56927 573 chain 224051 chr18 78077248 + 52822595 52825187 L1PA5 6144 + 3537 6132 17653 145 2 1 42 1 0 620 0 2 309 1 2 85 3 1 525 4 3 22 1 0 6 0 5 51 0 1 775 chain 7887 chr18 78077248 + 52826627 52826732 THE1A 353 + 242 353 171755 68 1 8 13 1 0 22 chain 126522 chr18 78077248 + 52826733 52828281 THE1A-int 1579 + 1 1574 28938 492 5 6 4 1 0 100 0 25 303 2 1 4 0 1 637 chain 19783 chr18 78077248 + 52828286 52828591 THE1A 353 + 0 304 127867 109 17 17 74 24 23 81 chain 7123 chr18 78077248 + 52878589 52878681 MLT1B 390 + 281 374 176593 63 0 1 29 chain 4321 chr18 78077248 + 53035767 53035837 MER30 238 - 146 238 202956 38 7 29 25 chain 13257 chr18 78077248 + 53047500 53047680 L1PA7 6471 - 2 180 147260 10 2 0 12 1 0 135 3 4 17 chain 18302 chr18 78077248 + 53308481 53308825 THE1B 368 - 0 366 132070 56 7 6 56 74 82 51 11 26 89 chain 29973 chr18 78077248 + 53332418 53332823 LTR12C 1709 + 979 1709 84894 18 6 231 212 0 101 86 6 5 77 chain 6776 chr18 78077248 + 53333465 53333551 MER51A 677 + 573 662 179142 41 0 3 45 chain 23336 chr18 78077248 + 53343660 53344003 THE1B 368 - 0 368 114001 6 0 1 118 17 29 14 4 2 27 1 0 107 5 20 44 chain 16766 chr18 78077248 + 53344003 53344246 L1MA3 4352 - 2722 2972 136205 102 1 0 71 13 19 38 0 2 18 chain 549774 chr18 78077248 + 53382715 53388760 L1PA2 6032 - 1 6032 1478 311 26 3 172 1 0 367 0 11 4911 1 0 256 chain 18107 chr18 78077248 + 53393635 53393993 THE1C 375 - 0 375 132578 33 0 11 43 7 5 101 0 3 46 68 69 11 0 6 12 22 20 15 chain 14551 chr18 78077248 + 53433585 53433781 THE1C 375 - 1 191 142725 24 1 0 61 7 2 103 chain 398961 chr18 78077248 + 53465721 53470574 L1PA5 6144 - 3 4550 10137 138 0 1 4 1 6 1092 2 1 107 8 0 89 315 2 1014 1 0 57 0 2 1048 0 4 130 0 2 59 0 3 5 0 1 70 2 1 711 chain 28673 chr18 78077248 + 53467173 53467475 AluYa5 310 - 8 310 90433 302 chain 7351 chr18 78077248 + 53506627 53506721 L1PB4 2604 - 52 147 175085 54 0 1 40 chain 3725 chr18 78077248 + 53507803 53507848 LTR12C 1709 - 732 777 211557 45 chain 542187 chr18 78077248 + 53554651 53560668 L1PA3long 6157 - 5 6157 2473 851 0 1 1361 0 4 665 0 4 263 0 1 612 4 1 565 1 0 918 1 129 624 0 1 152 chain 23043 chr18 78077248 + 53584267 53584650 THE1B 368 + 0 368 115433 15 14 6 23 8 24 104 3 2 18 2 0 134 28 8 34 chain 9673 chr18 78077248 + 53610634 53610778 MSTB 430 - 0 141 162228 18 9 6 117 chain 45829 chr18 78077248 + 53615331 53615883 MER41A 554 + 0 554 62200 229 3 4 197 0 1 123 chain 416534 chr18 78077248 + 53618843 53624742 HERVE_a-int 7009 + 135 7007 9622 19 5 2 28 4 2 73 2 0 6 3 1 24 1 0 3 1 0 8 1 0 8 1 0 14 54 44 11 28 0 34 4 2 25 1 0 39 6 5 21 1 0 54 1 0 34 1 0 98 1 0 12 1 0 15 2 1 33 1 0 10 1 0 51 7 5 26 1 0 38 4 5 24 1 0 26 1 0 8 1 0 72 3 2 32 1 0 40 2 0 14 1 0 52 1 0 21 1 0 15 10 8 10 20 15 11 1 0 16 1 0 22 1 0 4 10 8 10 2 1 4 1 0 5 1 0 57 4 2 55 1 0 23 1 0 16 6 5 109 2 1 19 1 0 20 2 1 11 1 0 17 1 0 10 2 1 4 1 0 19 2 1 41 1 0 38 1 0 62 1 0 36 1 0 8 1 0 34 1 0 22 0 2 20 1 0 23 1 0 17 1 0 24 2 0 97 8 1 8 2 1 25 6 4 29 13 8 17 7 5 6 1 0 146 1 0 14 1 0 38 1 0 168 1 0 379 0 3 21 3 2 88 1 0 414 0 571 106 0 576 89 1 2 367 0 27 97 15 6 106 1 0 11 27 25 75 1 0 7 1 0 41 1 0 24 1 0 86 1 0 12 1 0 258 2 0 94 9 8 15 1 0 3 1 0 57 2 0 18 1 0 13 1 0 81 2 0 138 1 0 42 1 0 29 4 3 10 1 0 16 1 0 5 2 0 7 2 1 36 1 0 21 5 4 28 0 4 11 1 0 3 1 0 28 7 5 55 12 7 29 3 0 54 3 1 27 1 0 30 1 0 6 3 1 13 1 0 24 2 0 34 4 2 15 34 26 22 3 1 5 1 0 11 chain 33685 chr18 78077248 + 53624749 53625212 LTR2 463 + 0 463 78117 154 6 7 219 17 18 13 1 0 28 1 0 24 chain 18521 chr18 78077248 + 53644744 53645091 L1PB3 3668 + 3281 3595 131444 10 1 0 97 4 3 72 34 19 12 1 0 9 1 0 25 16 7 31 7 3 15 1 0 11 chain 3180 chr18 78077248 + 53646392 53646427 MLT2B1 522 + 0 35 221359 35 chain 3853 chr18 78077248 + 53651397 53651439 MER63A 208 + 85 127 209607 42 chain 459520 chr18 78077248 + 53677806 53683341 L1PA7 6471 - 11 5563 8419 839 2 1 158 1 2 111 1 0 574 0 3 284 0 1 990 3 0 95 8 11 10 1 4 343 0 12 389 0 1 111 0 2 78 6 0 806 0 2 346 1 0 6 0 1 372 chain 13586 chr18 78077248 + 53683375 53683692 L1PB1 5432 - 28 318 146031 13 1 0 21 1 0 23 3 1 15 33 22 13 24 21 39 1 0 11 6 5 52 2 0 9 5 1 11 2 1 32 chain 21552 chr18 78077248 + 53724454 53724720 AluY 311 + 0 261 121955 113 11 5 8 0 1 134 chain 12061 chr18 78077248 + 53746629 53746826 U17 202 - 2 202 151942 43 0 2 49 37 38 68 chain 6732 chr18 78077248 + 53768369 53768487 MER20 218 + 34 156 179454 35 24 28 59 chain 257313 chr18 78077248 + 53798125 53801230 L1PA7 6471 + 3355 6465 15861 98 0 3 91 5 9 14 0 4 391 0 3 40 1 0 430 1 0 47 1 2 172 11 0 29 1 2 265 1 0 123 0 5 531 1 0 61 1 2 782 2 0 6 chain 289136 chr18 78077248 + 53821087 53824318 L1PA5 6144 + 2897 6134 14074 1167 0 1 282 0 4 271 0 1 1511 chain 6011 chr18 78077248 + 53826475 53826568 L1PB1 5432 + 5297 5387 185125 30 2 0 5 1 0 14 2 0 27 0 2 12 chain 5063 chr18 78077248 + 53840175 53840245 MER5A 189 - 118 189 194509 43 5 6 22 chain 10660 chr18 78077248 + 53851696 53851950 L1PA15 4387 - 34 272 157564 24 5 0 11 6 4 27 12 0 17 47 56 14 4 0 15 1 0 55 1 0 15 chain 2682 chr18 78077248 + 53873900 53874009 MamRep434 362 - 47 156 230426 18 66 66 25 chain 15789 chr18 78077248 + 53896187 53896389 L1PA8A 6298 - 8 210 138985 92 0 2 5 2 0 103 chain 202728 chr18 78077248 + 53908882 53911123 L1PA3long 6157 - 0 2244 19011 1362 0 2 715 0 1 164 chain 40797 chr18 78077248 + 53911123 53911622 L1P1 4361 + 570 1062 68179 122 7 0 370 chain 13470 chr18 78077248 + 53912016 53912189 L1PB4 2604 + 2400 2572 146449 152 1 0 20 chain 5181 chr18 78077248 + 53919755 53919848 MLT1E3 631 + 506 607 193221 6 0 5 10 9 8 13 0 5 4 1 0 50 chain 27154 chr18 78077248 + 53947051 53947422 THE1C 375 + 0 375 95743 109 0 1 15 3 0 43 2 1 14 3 4 146 0 7 9 1 0 26 chain 6848 chr18 78077248 + 53948711 53948791 L1PA16 3655 - 80 160 178599 80 chain 22896 chr18 78077248 + 53978840 53979140 AluSp 311 - 14 311 116125 15 4 5 114 4 0 163 chain 6978 chr18 78077248 + 54015686 54015882 MER58A 224 - 25 218 177619 28 60 53 12 20 25 32 1 0 43 chain 215892 chr18 78077248 + 54031613 54034525 L1PB1 5432 - 22 2928 18115 6 1 0 13 1 0 21 1 0 13 7 0 6 0 5 14 8 5 19 14 5 8 3 0 14 1 0 44 1 0 15 3 2 45 8 6 11 16 11 12 1 0 21 21 11 106 2 5 352 0 1 16 7 9 547 0 5 334 7 10 161 19 36 40 0 4 527 0 3 5 3 0 100 4 5 5 2 0 212 14 15 101 chain 3476 chr18 78077248 + 54065254 54065293 tRNA-Thr-ACA 39 + 0 39 215720 39 chain 22093 chr18 78077248 + 54078211 54078490 AluY 311 + 29 302 119822 95 6 0 178 chain 35730 chr18 78077248 + 54082666 54083114 LTR7 482 + 0 482 75221 251 0 31 83 1 2 52 12 14 49 chain 300133 chr18 78077248 + 54083116 54086865 HERVH-int 3825 + 0 3825 13418 158 1 0 374 194 0 38 1 0 10 1 0 9 4 0 14 17 49 4 1 0 42 3 2 49 1 2 12 0 2 13 0 3 660 0 1 242 5 32 585 0 1 818 8 218 267 0 2 218 chain 4357 chr18 78077248 + 54083661 54083710 HERVH-int 3825 + 483 532 202482 49 chain 3506 chr18 78077248 + 54083723 54083764 HERVH-int 3825 + 540 580 215275 30 1 0 10 chain 3789 chr18 78077248 + 54083803 54083843 HERVH-int 3825 + 436 476 194933 40 chain 36524 chr18 78077248 + 54088124 54088572 LTR7 482 + 0 482 74208 261 0 31 73 1 2 52 12 14 49 chain 219895 chr18 78077248 + 54105206 54108140 L1PB1 5432 + 2501 5427 17885 986 7 0 92 16 23 130 1 0 186 0 1 43 1 0 30 7 6 166 0 4 191 5 7 70 0 1 54 0 18 122 4 0 340 0 1 131 1 2 10 4 1 18 1 0 13 22 17 6 2 0 9 0 5 35 1 0 12 18 17 33 2 1 12 28 18 15 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 8638 chr18 78077248 + 54140415 54140524 MLT1B 390 - 256 367 167551 57 0 2 52 chain 32168 chr18 78077248 + 54152635 54152993 L1PA6 6164 - 3 361 80586 358 chain 4807 chr18 78077248 + 54161593 54161657 L1MB8 1703 + 1528 1592 197268 64 chain 9344 chr18 78077248 + 54163570 54163689 MER85 139 + 10 139 163837 82 0 10 37 chain 27136 chr18 78077248 + 54175637 54175997 THE1C 375 + 0 360 95808 181 5 6 163 1 0 10 chain 554415 chr18 78077248 + 54192800 54198925 L1PA3long 6157 + 5 6157 895 1658 0 2 127 0 5 1069 0 15 358 1 2 25 0 1 1393 0 1 497 0 1 412 0 1 585 chain 3457 chr18 78077248 + 54199741 54199820 MIRb 242 - 69 147 216033 20 27 26 32 chain 4852 chr18 78077248 + 54207510 54207589 MLT1A0 366 + 18 101 196766 11 0 1 10 0 2 15 8 9 35 chain 119798 chr18 78077248 + 54239334 54240770 LTR12C 1709 + 0 1707 31121 17 4 0 633 0 278 80 9 1 99 1 0 9 3 1 106 0 4 436 8 12 31 chain 7796 chr18 78077248 + 54246974 54247084 L1MCa 1829 + 1413 1518 172322 67 3 0 5 2 0 33 chain 18076 chr18 78077248 + 54253827 54254189 THE1D 372 + 20 370 132658 25 0 1 10 63 46 64 24 26 5 0 3 21 13 12 137 chain 14906 chr18 78077248 + 54260269 54260628 MSTA 426 - 0 426 141616 87 14 43 39 52 0 10 1 48 13 12 9 17 37 68 33 4 19 40 chain 4569 chr18 78077248 + 54327567 54327689 Tigger4a 237 - 115 237 200015 26 13 0 7 27 41 22 1 0 26 chain 39072 chr18 78077248 + 54343297 54343913 L1M1 2793 - 109 729 70640 10 1 0 46 1 0 38 28 32 5 0 1 118 1 0 17 0 2 52 20 0 50 17 29 149 0 5 20 6 10 8 1 0 28 chain 3819 chr18 78077248 + 54346088 54346392 L1M1 2793 - 2093 2301 210096 27 176 94 11 1 0 7 3 0 7 6 3 11 1 0 6 1 0 6 11 8 10 1 0 13 1 0 5 chain 178320 chr18 78077248 + 54391895 54393892 L1PA5 6144 - 12 2009 21134 135 3 0 463 0 1 351 1 0 496 0 3 548 chain 4846 chr18 78077248 + 54402914 54403026 MER58A 224 - 10 128 196835 49 41 47 22 chain 8342 chr18 78077248 + 54420458 54420557 HY3 101 - 1 101 169160 60 0 1 39 chain 5248 chr18 78077248 + 54454118 54454196 MADE1 96 - 0 96 192538 20 3 5 26 0 16 29 chain 22117 chr18 78077248 + 54480189 54480423 L1HS 6032 + 5797 6031 119718 234 chain 141034 chr18 78077248 + 54498774 54500575 L1P3 4156 + 6 1807 25978 116 1 0 127 15 14 58 1 0 85 4 0 268 14 15 111 6 7 403 0 4 102 0 1 490 chain 9123 chr18 78077248 + 54500594 54500709 L1PA7 6471 + 6325 6467 164954 49 2 29 64 chain 5979 chr18 78077248 + 54511389 54511502 L1MB3 1562 - 629 727 185434 18 2 0 17 23 10 53 chain 67031 chr18 78077248 + 54550783 54551827 L1PB1 5432 - 28 1047 49643 13 1 0 21 1 0 24 30 25 13 34 22 5 1 0 44 1 0 16 2 1 52 2 0 7 9 5 10 1 0 8 1 0 23 7 0 8 1 4 300 1 9 80 1 0 88 1 3 238 chain 145479 chr18 78077248 + 54551886 54554277 L1PBa 3878 + 48 2101 25260 12 3 0 3 1 0 15 4 0 7 1 0 5 2 0 55 1 0 12 3 0 7 2 1 47 1 0 9 28 30 104 6 7 59 5 8 110 0 3 278 0 3 21 0 1 87 320 3 38 8 3 59 26 0 133 0 4 253 7 3 93 0 3 81 1 6 10 0 2 197 17 7 65 1 6 16 0 5 139 0 4 39 chain 4737 chr18 78077248 + 54569832 54569891 MADE2 80 - 11 70 198062 59 chain 34766 chr18 78077248 + 54583353 54583740 L1PA5 6144 - 3 390 76520 387 chain 9049 chr18 78077248 + 54609767 54609924 MER6A 605 + 365 524 165319 72 1 0 5 3 7 38 15 14 23 chain 4546 chr18 78077248 + 54700081 54700143 MER1A 529 + 394 456 200259 50 1 0 5 0 1 6 chain 5474 chr18 78077248 + 54709205 54709290 MER58D 378 + 253 354 190271 22 14 30 49 chain 68312 chr18 78077248 + 54709715 54710525 L1PA7 6471 + 5659 6470 49118 63 0 6 585 0 1 86 6 0 70 chain 39546 chr18 78077248 + 54731879 54732330 LTR7 482 - 0 482 69962 185 0 31 17 1 0 8 0 1 240 chain 297610 chr18 78077248 + 54735554 54739280 HERVH-int 3825 - 0 3825 13544 225 0 2 268 0 210 27 18 23 662 1 0 4 0 1 105 0 1 287 0 4 290 3 30 298 2 0 162 15 0 447 1 0 50 1 0 5 0 1 12 65 0 14 1 0 11 2 0 16 42 0 14 1 0 4 9 7 14 3 0 12 1 0 15 7 1 13 8 5 5 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 101 2 0 232 chain 39730 chr18 78077248 + 54739282 54739733 LTR7 482 - 0 482 69712 185 0 31 266 chain 17143 chr18 78077248 + 54765007 54765707 L1PB1 5432 + 5042 5391 135192 61 393 64 53 18 16 45 1 0 15 3 0 6 16 6 19 2 0 5 1 0 14 2 0 24 1 0 21 chain 328719 chr18 78077248 + 54767995 54772192 L1P3 4156 - 17 4153 12248 26 2 1 5 2 0 106 5 4 89 0 1 298 1 0 719 0 4 256 17 1 155 3 4 803 1 2 5 0 1 371 19 20 420 32 13 272 1 0 145 32 10 23 19 21 44 1 0 56 27 17 8 0 1 57 1 2 176 chain 20225 chr18 78077248 + 54778428 54778809 THE1C 375 + 0 375 126450 58 29 24 42 52 54 12 6 5 154 1 0 8 2 1 17 chain 15279 chr18 78077248 + 54829821 54830097 MSTA 426 + 132 408 140542 62 73 73 141 chain 9834 chr18 78077248 + 54878312 54878429 MER41B 635 + 127 244 161431 117 chain 9590 chr18 78077248 + 54878431 54878545 MER41B 635 - 510 624 162640 114 chain 329292 chr18 78077248 + 54893424 54897227 L1PA6 6164 + 2339 6149 12228 387 1 0 4 1 2 1918 0 5 331 1 2 309 0 1 509 1 0 24 0 1 183 1 0 5 1 2 127 chain 30558 chr18 78077248 + 54903698 54904016 AluYb8 318 + 0 318 83298 318 chain 546884 chr18 78077248 + 54926930 54932959 L1PA2 6032 + 3 6032 1842 253 1 0 690 1 2 326 9 0 9 0 9 4740 chain 91035 chr18 78077248 + 54935665 54936708 L1PA6 6164 - 3 1048 39277 346 0 1 538 0 1 159 chain 79697 chr18 78077248 + 54950783 54951832 L1PA8A 6298 - 7 1074 43736 130 0 2 23 3 6 110 0 1 42 3 0 131 0 1 6 2 1 147 15 22 123 0 4 51 0 3 75 4 3 118 12 14 54 chain 8599 chr18 78077248 + 54951832 54951928 U6 107 - 0 96 167734 96 chain 58337 chr18 78077248 + 54961933 54962758 Charlie3 2679 + 19 2603 53786 13 9 8 15 9 13 113 20 30 259 0 1747 62 5 4 320 chain 57157 chr18 78077248 + 54970384 54971010 L1PA4 6152 + 5512 6138 54429 626 chain 30838 chr18 78077248 + 54978422 54978817 MER57B1 401 + 0 397 82792 189 6 7 151 0 1 49 chain 43623 chr18 78077248 + 54981164 54981679 L1PA7 6471 + 5950 6464 64658 448 4 3 63 chain 29252 chr18 78077248 + 54995059 54995365 AluYb8 318 - 12 318 87783 306 chain 10177 chr18 78077248 + 55010361 55010473 L1PA3long 6157 + 6043 6155 159736 112 chain 32009 chr18 78077248 + 55017284 55017899 L1MA5A 2387 - 88 672 80850 4 1 0 59 8 0 4 16 0 14 3 0 63 2 0 48 68 66 8 1 0 47 0 1 46 0 2 50 57 56 116 chain 5281 chr18 78077248 + 55039829 55039912 MER58A 224 - 100 183 192197 20 6 10 8 4 0 45 chain 144911 chr18 78077248 + 55061203 55063822 L1MA2 4263 + 1969 4105 25339 77 6 5 192 8 16 94 1 2 241 510 0 166 0 2 133 5 6 40 0 1 89 5 6 21 27 27 67 7 34 219 0 1 26 1 4 111 10 11 6 1 0 14 16 12 68 3 2 116 31 28 148 13 11 93 15 8 39 chain 41184 chr18 78077248 + 55061848 55062332 L1PA6 6164 - 2 487 67663 230 0 1 254 chain 20876 chr18 78077248 + 55087026 55087287 L1PA7 6471 + 6212 6469 124374 98 2 1 145 3 0 13 chain 38088 chr18 78077248 + 55124919 55125361 L1PA6 6164 + 5720 6162 72005 442 chain 14430 chr18 78077248 + 55159485 55159766 L1PB1 5432 + 5167 5424 143113 53 2 1 16 1 0 44 1 0 15 3 0 7 15 6 16 26 21 23 2 1 21 1 0 13 1 0 16 1 0 4 chain 120934 chr18 78077248 + 55162726 55164055 L1PA3long 6157 + 4824 6156 30713 88 2 1 397 0 4 842 chain 2934 chr18 78077248 + 55166076 55166108 LTR16A 446 + 409 441 226437 32 chain 21788 chr18 78077248 + 55178581 55178824 L1PA3long 6157 + 5914 6157 121071 243 chain 43398 chr18 78077248 + 55193670 55194251 MLT2A2 560 + 0 560 64939 17 0 4 183 0 1 161 29 5 142 2 0 47 chain 28163 chr18 78077248 + 55198311 55198651 THE1A 353 - 12 353 92419 314 0 1 26 chain 11782 chr18 78077248 + 55205138 55205337 THE1D 372 + 176 372 153124 13 3 0 5 5 6 25 0 3 5 18 14 125 chain 26192 chr18 78077248 + 55213826 55214535 THE1C-int 1605 + 1221 1599 99231 77 356 26 62 0 1 170 0 1 12 4 1 28 chain 33006 chr18 78077248 + 55239378 55239751 L1PA5 6144 + 5703 6091 79205 70 0 16 6 1 0 296 chain 3588 chr18 78077248 + 55244485 55244558 MER58A 224 + 42 116 213862 39 22 23 12 chain 10867 chr18 78077248 + 55249445 55249667 Tigger4a 237 + 7 237 156708 102 74 82 46 chain 24931 chr18 78077248 + 55283376 55283676 AluY 311 + 0 304 105155 52 5 12 220 3 0 20 chain 25568 chr18 78077248 + 55295050 55295518 MER4A1 472 - 0 472 101884 67 8 10 41 20 21 33 11 15 80 1 5 9 4 0 52 16 15 77 28 24 6 0 2 15 chain 25019 chr18 78077248 + 55295692 55296028 MER41D 557 + 16 368 104687 46 5 18 116 0 3 169 chain 20919 chr18 78077248 + 55296361 55296635 AluSx1 309 + 29 304 124216 18 0 1 15 1 0 38 9 10 193 chain 150262 chr18 78077248 + 55299331 55301135 SVA_D 2077 - 21 2071 24575 277 1 0 267 0 1 59 0 98 140 0 178 87 46 6 26 3 1 13 2 0 140 7 4 19 32 0 4 8 0 8 0 3 75 0 40 555 0 1 12 0 13 23 chain 3560 chr18 78077248 + 55300162 55300208 SVA_D 2077 - 901 947 129074 46 chain 1278 chr18 78077248 + 55300418 55300450 SVA_D 2077 - 1260 1292 140948 32 chain 116415 chr18 78077248 + 55309220 55311410 LTR12C 1709 - 0 1709 32307 84 1 0 84 613 0 198 1 2 113 44 13 96 5 3 4 1 0 194 0 2 62 0 118 263 7 9 65 18 61 40 29 31 9 5 4 254 chain 12331 chr18 78077248 + 55309390 55309533 LTR12C 1709 - 168 311 150893 143 chain 4763 chr18 78077248 + 55309925 55310001 LTR12C 1709 - 62 168 197782 40 0 1 4 1 30 31 chain 3356 chr18 78077248 + 55323103 55323165 LTR67B 553 + 62 127 217954 5 0 2 6 2 0 30 5 8 14 chain 8779 chr18 78077248 + 55324242 55324340 L1PA8A 6298 - 8 106 166769 98 chain 4243 chr18 78077248 + 55332229 55332279 MER20 218 - 78 128 203963 50 chain 3376 chr18 78077248 + 55345853 55345891 tRNA-Gly-GGA 38 + 0 38 217566 38 chain 3376 chr18 78077248 + 55346176 55346214 tRNA-Gly-GGA 38 + 0 38 217565 38 chain 10646 chr18 78077248 + 55354617 55354742 MER85 139 + 0 135 157619 89 0 10 36 chain 556594 chr18 78077248 + 55386480 55392496 L1PA2 6032 + 2 6032 659 517 0 2 45 0 12 5454 chain 59227 chr18 78077248 + 55402053 55402822 LTR17 781 + 0 772 53267 119 0 9 15 0 1 54 21 11 70 0 2 18 10 0 29 0 1 8 11 21 34 1 0 39 0 1 340 chain 24929 chr18 78077248 + 55403044 55403405 L1PA8 5853 - 0 347 105169 92 2 1 19 2 1 40 2 0 12 7 1 8 2 1 70 2 0 44 1 0 58 chain 8453 chr18 78077248 + 55422625 55422726 U6 107 + 0 101 168546 101 chain 30380 chr18 78077248 + 55487973 55488362 MER1A 529 + 128 529 83709 126 1 10 193 11 14 58 chain 20651 chr18 78077248 + 55489956 55490371 L1M1 2793 - 1662 2049 125129 124 5 4 17 24 25 60 1 0 5 3 1 42 28 25 25 1 0 25 35 14 20 chain 39084 chr18 78077248 + 55498992 55499528 LTR12F 595 - 0 595 70627 73 0 4 107 2 1 18 2 0 153 14 62 25 0 15 33 6 1 103 chain 27902 chr18 78077248 + 55514573 55514939 THE1B 368 - 0 368 93358 193 4 3 130 0 5 22 2 0 15 chain 29119 chr18 78077248 + 55524604 55525001 LTR7 482 + 1 482 88458 50 26 64 109 0 1 8 0 31 41 0 1 79 0 13 84 chain 28759 chr18 78077248 + 55541422 55541740 L1PA5 6144 + 5813 6131 90074 318 chain 21063 chr18 78077248 + 55547143 55547441 THE1B 368 + 0 306 123683 34 4 9 126 1 0 33 1 0 7 1 5 18 1 0 6 0 2 66 chain 6638 chr18 78077248 + 55551739 55551817 MSTB2 466 - 353 431 180178 78 chain 20345 chr18 78077248 + 55563416 55563761 MSTA 426 - 0 377 126079 108 19 27 58 5 11 10 8 0 56 9 13 14 11 33 47 chain 21590 chr18 78077248 + 55591360 55591637 AluSz6 309 - 26 308 121806 225 6 11 46 chain 28338 chr18 78077248 + 55671134 55671428 AluYa5 310 - 16 310 91807 294 chain 12489 chr18 78077248 + 55738934 55739231 THE1B 368 - 61 368 150298 65 12 10 18 30 34 11 1 0 53 58 69 34 2 0 13 chain 11780 chr18 78077248 + 55763047 55763271 MER30 238 + 0 238 153132 15 31 35 49 12 26 14 2 1 59 3 0 39 chain 29438 chr18 78077248 + 55801593 55801903 AluYa5 310 - 0 310 86908 310 chain 29622 chr18 78077248 + 55846707 55847227 MER1A 529 + 0 529 86143 14 4 27 39 61 63 8 3 0 7 0 3 10 1 0 40 1 0 231 1 0 5 0 1 11 28 14 56 chain 20257 chr18 78077248 + 56047810 56048043 L1PA7 6471 - 4 237 126355 233 chain 4095 chr18 78077248 + 56048043 56048089 L1PA7 6471 + 6172 6218 206006 46 chain 28844 chr18 78077248 + 56100667 56100968 AluYa5 310 - 9 310 89692 301 chain 23436 chr18 78077248 + 56101457 56101752 THE1A 353 + 0 294 113443 110 1 0 91 1 0 14 0 1 78 chain 10918 chr18 78077248 + 56101772 56101932 L1PA10 4194 + 4005 4161 156534 11 3 4 86 2 1 9 3 0 34 1 0 11 chain 27978 chr18 78077248 + 56120017 56120373 THE1A 353 - 0 353 93080 13 2 0 232 1 0 108 chain 82274 chr18 78077248 + 56126443 56127627 LTR12C 1709 + 0 1276 42648 52 0 3 207 0 1 14 0 17 120 54 51 110 0 2 142 0 118 249 7 15 9 1 0 7 31 1 21 0 8 77 35 4 48 chain 16806 chr18 78077248 + 56129685 56130025 L1PB3 3668 - 54 371 136101 15 8 5 12 1 0 13 7 3 37 3 1 20 11 10 16 20 4 15 1 6 51 20 19 90 chain 4154 chr18 78077248 + 56133509 56133558 MADE1 96 - 47 96 205191 49 chain 44904 chr18 78077248 + 56158339 56158934 LTR8 732 + 0 622 63171 303 15 16 205 2 0 16 0 28 54 chain 39464 chr18 78077248 + 56175544 56176095 MER41A 554 + 0 554 70062 54 1 0 79 23 1 166 7 4 21 0 1 9 0 1 6 0 27 185 chain 220967 chr18 78077248 + 56176131 56178576 L1PA4 6152 - 14 2460 17822 305 0 1 2140 chain 66421 chr18 78077248 + 56190163 56190894 L1PA3long 6157 - 10 746 49906 7 0 6 290 1 0 433 chain 5877 chr18 78077248 + 56201821 56201913 MER5A 189 + 42 166 186408 31 7 36 12 0 3 42 chain 23614 chr18 78077248 + 56231355 56231633 AluSp 311 - 13 291 112502 278 chain 9815 chr18 78077248 + 56240856 56240960 SVA_A 1864 - 0 104 161522 104 chain 4632 chr18 78077248 + 56253235 56253287 Charlie1a 1436 - 582 634 199285 52 chain 4269 chr18 78077248 + 56274946 56275385 LTR37B 484 + 0 480 203636 35 18 17 13 164 192 28 161 175 20 chain 16887 chr18 78077248 + 56286734 56286971 MER75B 242 + 1 238 135872 190 5 9 22 1 0 4 3 0 12 chain 42823 chr18 78077248 + 56310637 56311209 HERVH-int 3825 - 0 855 65622 142 0 9 30 0 227 119 1 0 38 22 71 174 1 0 45 chain 21621 chr18 78077248 + 56318739 56318984 L1PA4 6152 - 0 250 121695 6 0 5 239 chain 24155 chr18 78077248 + 56320432 56320791 THE1B 368 - 0 368 109451 114 56 66 19 1 0 169 chain 26539 chr18 78077248 + 56347907 56348187 AluYb8 318 + 34 314 97890 280 chain 21360 chr18 78077248 + 56362147 56362489 THE1B 368 + 1 367 122651 39 0 15 65 0 1 48 1 0 18 11 8 4 1 0 15 17 29 102 7 8 14 chain 62254 chr18 78077248 + 56372556 56373235 L1PA2 6032 - 1 680 51775 679 chain 12215 chr18 78077248 + 56374660 56374807 L1PA7 6471 - 2 149 151363 147 chain 13360 chr18 78077248 + 56391760 56391958 Tigger4b 360 + 0 228 146848 36 0 17 50 17 30 95 chain 26921 chr18 78077248 + 56396438 56396748 AluSp 311 + 0 309 96546 18 1 0 291 chain 5736 chr18 78077248 + 56398513 56398601 L1MB7 1623 - 606 695 187770 8 0 4 13 6 3 61 chain 4255 chr18 78077248 + 56402362 56402412 L1MA7 2200 - 261 311 203802 50 chain 26441 chr18 78077248 + 56440177 56440485 AluSc5 308 - 0 308 98265 308 chain 13241 chr18 78077248 + 56475669 56475879 MER50 708 - 448 658 147317 76 17 18 46 0 1 11 3 4 47 3 0 7 chain 9280 chr18 78077248 + 56486113 56486245 U8 134 - 0 133 164163 23 0 1 45 1 0 18 1 2 44 chain 5256 chr18 78077248 + 56491999 56492064 LTR37B 484 - 4 69 192448 65 chain 25364 chr18 78077248 + 56497095 56497437 THE1B 368 - 0 368 102863 102 0 9 46 11 13 29 1 0 48 0 1 61 0 15 44 chain 10676 chr18 78077248 + 56499517 56499651 MER51A 677 - 537 677 157503 9 0 6 125 chain 3857 chr18 78077248 + 56503730 56503771 L1MB3 1562 + 1439 1480 209478 41 chain 12421 chr18 78077248 + 56521616 56521761 AluSp 311 + 160 305 150558 145 chain 24200 chr18 78077248 + 56552211 56552514 AluSp 311 - 3 305 109210 180 2 1 121 chain 4193 chr18 78077248 + 56593471 56593520 U2 167 - 114 163 204644 49 chain 24940 chr18 78077248 + 56593566 56593879 AluSp 311 - 9 311 105108 191 11 0 111 chain 4587 chr18 78077248 + 56669902 56669954 MER63C 923 + 143 195 199784 52 chain 36838 chr18 78077248 + 56692859 56693321 L1PA8 5853 + 5395 5850 73752 169 1 0 44 2 0 74 1 0 6 1 0 51 3 2 19 1 0 90 chain 27774 chr18 78077248 + 56711414 56711850 LTR7B 505 - 0 505 93785 44 21 20 82 1 0 31 4 1 16 1 89 27 35 11 66 0 10 108 chain 15381 chr18 78077248 + 56739165 56739369 MER51B 395 + 193 395 140259 6 2 0 46 1 0 8 0 1 141 chain 7435 chr18 78077248 + 56748236 56748447 MLT1B 390 - 45 264 174547 59 103 112 37 1 0 11 chain 29091 chr18 78077248 + 56781035 56781348 AluYa5 310 + 0 310 88587 132 3 0 178 chain 11918 chr18 78077248 + 56781437 56781576 MER85 139 - 0 139 152525 139 chain 341546 chr18 78077248 + 56782016 56785884 L1PA5 6144 + 2258 6138 11851 47 0 2 502 0 2 315 0 1 40 1 0 1476 0 6 1201 0 1 141 5 6 140 chain 2537 chr18 78077248 + 56799701 56799779 MER52C 1267 + 1010 1052 232696 23 37 1 18 chain 9460 chr18 78077248 + 56854302 56854441 L1PA8 5853 - 0 137 163272 92 3 2 16 1 0 27 chain 25856 chr18 78077248 + 56855734 56856098 THE1B 368 - 0 368 100629 126 1 0 12 1 0 4 20 27 30 1 0 169 chain 251488 chr18 78077248 + 56870651 56874518 MER61-int 3695 + 0 3640 16145 28 5 1 21 1 0 7 0 1 20 25 21 173 1 0 63 0 1 75 15 1 130 1 6 53 0 1 43 0 96 25 0 1 69 22 27 121 13 6 450 0 1 165 13 18 298 21 44 172 1 0 204 310 0 268 7 0 4 7 0 151 1 0 39 0 1 26 0 1 14 50 46 86 20 21 146 0 1 4 4 2 202 29 27 48 2 3 143 9 13 17 15 5 30 chain 39772 chr18 78077248 + 56909582 56910026 L1PA3long 6157 - 1 445 69663 29 0 1 308 1 0 106 chain 124633 chr18 78077248 + 56922241 56923676 SVA_B 1603 + 52 1603 29500 297 6 5 438 1 2 22 0 40 96 1 78 259 0 1 308 2 0 5 chain 535494 chr18 78077248 + 56923880 56930002 L1PA4 6152 + 3 6143 3519 242 0 1 572 18 18 1734 4 8 345 0 2 1431 0 4 258 0 1 167 0 1 11 0 1 505 0 4 835 chain 9951 chr18 78077248 + 56988604 56988746 MER51A 677 + 1 135 160832 113 15 7 14 chain 10860 chr18 78077248 + 57025057 57025196 L1PA4 6152 + 5997 6137 156742 93 1 2 45 chain 9624 chr18 78077248 + 57028412 57028515 L1PA5 6144 + 6039 6142 162470 103 chain 79892 chr18 78077248 + 57032990 57034012 L1PA8 5853 - 0 1022 43644 92 5 4 16 2 1 50 3 0 11 10 5 66 2 0 46 1 0 532 0 6 4 1 0 7 0 4 65 0 4 109 chain 277163 chr18 78077248 + 57034644 57038701 L1PA10 4194 - 33 3938 14799 11 1 0 34 3 0 64 11 12 44 4 5 596 12 11 54 14 15 89 0 1 95 0 1 454 10 12 6 0 2 43 2 0 19 25 5 81 0 1 281 0 4 78 5 8 132 0 1 242 0 1 64 7 0 459 6 7 10 0 1 62 7 6 62 51 22 256 26 35 56 48 0 55 0 1 179 67 26 48 1 0 9 2 0 6 7 0 15 1 0 6 5 0 7 13 11 21 2 0 9 40 33 7 1 0 14 3 1 15 chain 7710 chr18 78077248 + 57039388 57039479 L1P3 4156 - 4064 4155 172862 91 chain 24061 chr18 78077248 + 57061256 57061527 AluY 311 + 26 298 109973 106 0 1 165 chain 561589 chr18 78077248 + 57071171 57077202 L1PA2 6032 - 0 6031 301 6031 chain 54030 chr18 78077248 + 57083291 57083990 MER4E 760 - 0 705 56339 56 1 2 334 5 7 185 22 25 96 chain 6701 chr18 78077248 + 57096395 57096477 MLT1C 463 + 351 433 179678 82 chain 19956 chr18 78077248 + 57149140 57149486 L1PA8 5853 - 6 363 126916 10 0 1 14 9 13 15 0 4 29 8 7 13 2 1 47 17 15 68 3 8 30 0 2 8 6 5 67 chain 24187 chr18 78077248 + 57149486 57149767 L1PA8 5853 + 5153 5434 109290 281 chain 5544 chr18 78077248 + 57179407 57179469 LTR1 825 + 20 82 189615 62 chain 153929 chr18 78077248 + 57193840 57196170 L1PA10 4194 - 1698 4019 24098 48 1 0 5 0 1 217 0 1 176 0 2 17 8 14 133 0 4 44 10 5 58 12 13 30 0 5 14 2 0 5 0 2 120 0 3 25 0 3 85 5 12 163 6 10 76 3 4 33 0 1 5 1 0 32 0 1 344 0 11 8 4 6 33 0 1 227 0 2 13 4 2 14 1 0 65 1 0 5 1 0 3 7 0 13 1 0 7 37 41 21 1 0 7 39 14 6 1 0 15 2 0 21 6 5 4 1 0 9 2 0 9 31 22 15 7 0 11 chain 27106 chr18 78077248 + 57212844 57213199 THE1A 353 + 0 353 95921 47 0 1 48 1 0 227 2 0 30 chain 7205 chr18 78077248 + 57215995 57216104 Tigger3c 601 - 124 239 176038 22 0 1 24 9 14 54 chain 22363 chr18 78077248 + 57227553 57227841 L1PA8 5853 + 5565 5847 118656 43 2 0 74 1 0 6 1 0 52 2 1 19 1 0 87 chain 26098 chr18 78077248 + 57238539 57238855 L1PA5 6144 + 5814 6132 99628 224 4 5 19 0 1 69 chain 3504 chr18 78077248 + 57240111 57240154 MLT2C2 476 + 39 82 215306 43 chain 91347 chr18 78077248 + 57245074 57246196 L1PA7 6471 + 5341 6469 39176 257 1 5 11 0 5 81 0 2 103 0 3 359 0 4 49 5 0 99 1 0 142 6 0 8 chain 57603 chr18 78077248 + 57251098 57251742 L1PA3long 6157 + 5513 6157 54184 644 chain 7428 chr18 78077248 + 57279450 57279536 L1PA5 6144 + 6058 6144 174590 86 chain 4829 chr18 78077248 + 57328852 57328908 MER82 654 + 142 198 197031 56 chain 16601 chr18 78077248 + 57335166 57335367 L1PA7 6471 + 6268 6466 136666 85 1 0 106 2 0 7 chain 27871 chr18 78077248 + 57341000 57341341 L1P3 4156 - 18 356 93450 23 2 1 7 2 0 307 chain 40256 chr18 78077248 + 57341357 57341859 L1PA7 6471 + 5960 6465 68937 134 1 0 63 7 11 14 0 3 274 3 0 6 chain 129898 chr18 78077248 + 57380390 57381888 LTR12C 1709 - 0 1709 28107 481 0 4 29 0 207 151 1 0 570 1 2 265 chain 13247 chr18 78077248 + 57405885 57406193 LTR35 598 - 276 556 147297 45 77 78 93 2 0 8 19 11 37 19 0 8 chain 20685 chr18 78077248 + 57421112 57421456 THE1B 368 + 0 368 125017 21 0 6 13 0 15 48 4 0 48 11 10 8 1 0 29 35 45 51 1 0 74 chain 31707 chr18 78077248 + 57424655 57425069 L1PB4 2604 - 52 465 81318 165 2 0 228 0 1 19 chain 19182 chr18 78077248 + 57434093 57434452 MSTA 426 + 16 426 129579 69 23 44 4 1 0 10 13 19 22 54 79 163 chain 515218 chr18 78077248 + 57438595 57444674 L1PA6 6164 + 0 6162 5644 273 1 2 135 17 17 27 0 4 132 0 4 165 0 5 36 0 34 352 0 3 327 0 1 4 1 0 113 0 1 698 0 1 848 6 9 49 0 4 50 6 8 220 0 1 4 1 0 176 1 0 144 0 1 82 11 10 1440 0 26 428 0 1 181 1 0 140 4 0 6 chain 118617 chr18 78077248 + 57456864 57458247 LTR12C 1709 - 1 1709 31572 480 0 4 106 3 319 254 0 4 234 6 7 300 chain 6292 chr18 78077248 + 57493771 57493846 MER85 139 - 64 139 182867 75 chain 10989 chr18 78077248 + 57493848 57493984 L1PA16 3655 - 579 717 156238 94 0 2 42 chain 13494 chr18 78077248 + 57494365 57494559 MER41B 635 + 0 191 146375 125 1 2 38 13 9 17 chain 25366 chr18 78077248 + 57505757 57506040 L1PA4 6152 + 5868 6151 102853 283 chain 13954 chr18 78077248 + 57543780 57544023 L1MA5A 2387 + 1971 2212 144740 18 14 18 26 2 1 35 1 0 39 1 0 47 2 0 13 1 3 5 2 0 10 1 0 26 chain 40548 chr18 78077248 + 57553464 57554074 LTR10E 629 - 0 629 68515 7 1 0 52 40 36 155 1 0 55 1 0 27 1 27 96 15 16 142 1 0 16 chain 45234 chr18 78077248 + 57602762 57603315 MER41A 554 - 0 554 62787 161 0 1 298 2 3 41 1 0 50 chain 5130 chr18 78077248 + 57609319 57609387 MLT1C 463 + 57 124 193781 29 1 0 38 chain 25474 chr18 78077248 + 57610242 57610530 AluSp 311 - 11 300 102336 18 0 1 270 chain 40408 chr18 78077248 + 57616872 57617572 MLT2A2 560 + 0 560 68724 129 199 49 25 0 1 106 0 9 241 chain 14580 chr18 78077248 + 57660390 57660708 THE1D 372 + 0 332 142661 13 0 2 34 9 0 7 6 11 16 10 11 72 72 87 79 chain 469358 chr18 78077248 + 57664709 57671496 L1PA8A 6298 - 7 6221 8058 8 0 2 61 0 1 197 3 4 37 7 8 392 0 1 86 2 5 16 0 6 119 0 5 394 1 11 487 0 1 5 1 0 39 1 0 257 0 2 78 1 2 193 6 5 165 2 0 170 0 1 58 1 0 60 0 9 41 14 12 43 0 1 44 302 0 292 0 4 246 0 3 317 313 0 116 1 2 259 0 2 472 8 13 307 1 2 81 7 9 18 0 3 22 6 10 122 0 1 14 0 3 163 6 4 55 17 41 21 0 2 5 6 4 215 14 11 18 2 0 79 8 0 16 2 0 47 14 7 16 1 0 8 17 14 13 1 0 4 20 17 9 2 1 5 1 0 14 50 39 16 8 5 21 chain 54546 chr18 78077248 + 57684939 57685542 L1PA3long 6157 - 2 605 55998 603 chain 26042 chr18 78077248 + 57689528 57689830 AluSp 311 - 6 310 99852 224 0 2 78 chain 555138 chr18 78077248 + 57696910 57702939 L1PA2 6032 - 2 6031 811 2213 0 1 3560 1 0 255 chain 30591 chr18 78077248 + 57717429 57717831 MER41A 554 - 89 511 83218 63 5 23 158 6 8 170 chain 19459 chr18 78077248 + 57736899 57737148 L1PA8 5853 + 5608 5853 128791 70 2 1 9 1 0 52 2 1 16 5 4 92 chain 83146 chr18 78077248 + 57740302 57741221 L1PA3long 6157 - 5 927 42277 141 1 4 777 chain 66847 chr18 78077248 + 57772923 57773972 L1PA15 4387 + 3235 4267 49708 89 0 1 213 0 6 188 0 1 80 2 0 13 6 0 64 5 3 39 1 0 62 6 0 7 0 3 11 2 0 85 97 94 11 21 15 47 chain 49929 chr18 78077248 + 57801122 57801703 L1PA5 6144 + 5565 6144 59070 69 2 0 510 chain 45238 chr18 78077248 + 57821378 57821964 L1PA8 5853 - 0 581 62784 93 1 0 19 2 1 45 19 17 70 2 0 44 1 0 168 0 2 122 chain 54383 chr18 78077248 + 57845108 57845890 LTR12 884 - 0 884 56109 416 4 5 85 2 0 80 0 1 2 0 157 42 24 10 24 41 0 62 chain 2746 chr18 78077248 + 57845787 57845816 LTR12 884 - 649 678 205015 29 chain 13304 chr18 78077248 + 57868194 57868474 L1PB1 5432 + 5134 5391 147066 11 2 1 10 6 2 11 2 0 28 0 1 22 2 1 15 1 0 60 21 12 19 9 6 13 3 1 23 2 1 20 chain 8385 chr18 78077248 + 57871437 57871533 L1MA3 4352 - 740 836 168933 96 chain 15040 chr18 78077248 + 57887483 57887663 L1PA4 6152 - 9 191 141201 139 1 3 40 chain 6243 chr18 78077248 + 57902193 57902308 MSTD 398 - 0 113 183223 50 3 0 23 20 21 19 chain 15271 chr18 78077248 + 57918430 57918617 L1PA5 6144 + 5959 6139 140565 164 7 0 16 chain 115770 chr18 78077248 + 57940876 57942150 L1PA3long 6157 + 4877 6155 32536 433 0 4 841 chain 236613 chr18 78077248 + 57970598 57973289 L1PA4 6152 + 3442 6152 16946 164 1 0 37 0 4 709 0 4 275 1 0 573 0 1 95 0 5 410 0 5 419 0 2 7 chain 26679 chr18 78077248 + 57975818 57976156 L1PA6 6164 + 5832 6162 97389 170 15 7 153 chain 339606 chr18 78077248 + 58000004 58004740 L1PB1 5432 + 652 5391 11910 36 0 1 66 2 1 9 0 1 124 0 4 283 5 6 212 1 0 6 2 0 5 22 12 183 25 29 216 0 4 259 0 4 167 14 15 155 0 5 38 3 0 6 0 1 190 1 2 45 6 5 100 3 1 362 7 13 47 0 1 184 0 2 21 1 3 138 0 1 112 1 0 5 1 0 48 0 1 39 0 4 138 0 5 99 18 97 42 0 2 323 1 3 66 6 10 12 0 1 56 0 1 9 6 0 211 0 2 202 79 11 24 1 0 5 16 15 11 2 0 17 4 1 33 2 1 16 18 3 41 1 0 15 1 0 4 8 6 5 8 0 16 8 5 14 2 0 24 2 1 20 chain 47968 chr18 78077248 + 58015701 58016233 L1PA4 6152 + 5351 5884 60509 466 0 1 66 chain 18013 chr18 78077248 + 58027606 58027884 L1PA16 3655 - 66 342 132822 11 3 0 70 3 4 48 1 2 45 1 0 35 1 0 4 8 9 48 chain 20382 chr18 78077248 + 58032772 58032988 AluYa5 310 + 85 301 125954 216 chain 98315 chr18 78077248 + 58069277 58070397 L1PA5 6144 - 0 1121 37217 46 1 0 100 1 2 701 0 1 271 chain 44441 chr18 78077248 + 58077723 58078288 MLT2A2 560 + 0 560 63644 203 0 1 20 12 10 72 4 0 254 chain 4194 chr18 78077248 + 58079434 58079710 MLT1B 390 + 113 378 204636 11 6 13 29 194 176 36 chain 160519 chr18 78077248 + 58097663 58099432 L1PA3long 6157 - 0 1769 23267 1769 chain 74013 chr18 78077248 + 58099432 58100251 L1PA3long 6157 + 5335 6157 46367 161 0 3 658 chain 323749 chr18 78077248 + 58108825 58113746 L1PA11 4918 - 338 4915 12449 13 2 0 13 1 0 15 13 9 10 25 16 15 1 0 17 2 0 65 2 0 13 2 1 13 0 1 51 6 1 73 2 0 5 0 2 222 14 27 96 2 1 65 0 1 76 8 9 395 5 6 152 0 1 89 0 12 49 366 32 25 1 2 267 1 0 5 1 0 120 0 3 304 5 4 17 0 4 29 2 1 29 23 4 5 0 1 33 9 4 319 0 1 21 0 1 106 0 9 124 19 20 57 1 0 331 6 9 35 1 0 4 0 1 258 0 6 101 0 1 185 0 1 4 6 5 154 19 17 168 9 6 32 7 6 38 9 7 15 1 0 29 3 2 6 2 0 28 10 8 39 chain 156814 chr18 78077248 + 58121257 58123214 L1PA3long 6157 - 4 1760 23755 13 1 0 1115 210 9 383 1 0 74 0 1 134 0 1 26 chain 25086 chr18 78077248 + 58124116 58124477 THE1B-int 1605 - 1244 1605 104378 53 18 0 26 0 16 224 6 7 14 0 2 5 1 0 14 chain 58866 chr18 78077248 + 58140877 58141638 L1PA8 5853 + 5095 5846 53478 299 4 0 170 1 0 44 2 0 71 14 13 48 2 1 19 2 1 85 chain 27148 chr18 78077248 + 58172222 58172513 L1HS 6032 - 0 291 95763 291 chain 266089 chr18 78077248 + 58188071 58191064 L1PA5 6144 - 4 3009 15387 144 0 7 51 0 1 361 1 2 1046 0 1 355 0 1 967 0 1 68 chain 8202 chr18 78077248 + 58209298 58209391 L1PA5 6144 - 0 93 169943 93 chain 43219 chr18 78077248 + 58238677 58239172 L1PA4 6152 + 5643 6141 65148 358 2 3 42 1 3 92 chain 34051 chr18 78077248 + 58240172 58240680 L1MA2 4263 + 3440 3933 77542 126 23 20 133 10 0 73 25 23 118 chain 125690 chr18 78077248 + 58248685 58250217 L1PA7 6471 - 1 1544 29191 145 5 6 116 0 4 144 0 1 204 0 6 214 0 4 2 5 0 8 6 0 9 0 4 248 2 1 5 0 1 64 0 1 327 0 1 28 chain 42254 chr18 78077248 + 58278192 58278677 L1PA4 6152 - 0 483 66326 6 3 0 137 0 6 7 5 0 327 chain 86997 chr18 78077248 + 58295725 58296707 L1PA4 6152 - 12 994 40781 101 0 1 71 0 1 4 1 0 668 1 0 136 chain 27590 chr18 78077248 + 58308477 58308827 THE1C 375 - 21 375 94376 4 1 0 80 0 1 130 0 4 135 chain 143708 chr18 78077248 + 58314529 58316176 L1PA4 6152 + 4511 6143 25531 214 4 0 16 4 0 436 11 1 825 0 3 137 chain 25872 chr18 78077248 + 58327745 58328121 THE1C 375 - 0 374 100559 26 1 0 55 0 2 86 0 3 13 1 0 6 1 2 62 3 0 35 9 6 78 chain 14123 chr18 78077248 + 58341374 58341588 L1PA8 5853 + 5643 5853 144129 35 22 20 42 2 1 19 1 0 93 chain 56464 chr18 78077248 + 58373445 58374443 L1PA7 6471 - 1 695 54871 15 0 6 443 309 0 50 1 0 180 chain 210814 chr18 78077248 + 58377840 58380311 HERV17-int 4347 + 1871 4347 18443 901 0 1 374 1 0 494 1 0 302 0 5 55 1 2 342 chain 27565 chr18 78077248 + 58380625 58380950 LTR17 781 + 0 324 94450 119 0 9 171 10 0 25 chain 62362 chr18 78077248 + 58388132 58388932 THE1B-int 1605 - 5 808 51734 596 0 1 55 0 1 108 19 20 22 chain 15802 chr18 78077248 + 58406186 58406395 L1PA8 5853 + 5648 5853 138949 31 1 0 14 1 0 47 2 1 19 1 0 93 chain 8670 chr18 78077248 + 58431338 58431437 L1PA4 6152 + 6047 6146 167358 99 chain 68188 chr18 78077248 + 58460826 58461649 L1PA7 6471 + 5641 6465 49164 65 1 0 242 1 5 183 0 1 322 3 0 6 chain 326779 chr18 78077248 + 58464405 58468317 L1PA6 6164 - 3 4134 12313 157 2 1 44 4 5 639 2 0 94 0 1 242 3 0 479 6 8 239 0 1 395 0 1 281 14 230 61 6 7 86 0 1 863 0 1 140 0 1 6 3 2 146 chain 149096 chr18 78077248 + 58469809 58471625 L1PA8 5853 + 4028 5853 24740 267 0 14 25 3 0 259 0 1 411 1 4 555 1 0 44 2 0 70 2 1 9 1 0 10 1 2 40 2 1 19 1 0 93 chain 65651 chr18 78077248 + 58485515 58486259 L1PA4 6152 - 0 763 50272 7 0 7 376 0 11 118 0 1 243 chain 23647 chr18 78077248 + 58514011 58514264 L1PA3long 6157 + 5904 6157 112326 253 chain 27925 chr18 78077248 + 58524042 58524380 L1PA4 6152 - 0 338 93260 6 0 5 142 7 0 81 0 2 102 chain 24288 chr18 78077248 + 58581365 58581655 L1PA4 6152 + 5859 6152 108720 269 0 6 6 3 0 12 chain 24907 chr18 78077248 + 58594440 58594720 L1PA3long 6157 - 1431 1711 102944 280 chain 131673 chr18 78077248 + 58594720 58596156 L1PA3long 6157 + 4722 6157 27707 585 1 0 850 chain 46680 chr18 78077248 + 58625304 58625823 L1PA5 6144 - 5 524 61470 519 chain 18613 chr18 78077248 + 58625823 58626029 L1PA5 6144 + 5435 5641 131179 206 chain 37393 chr18 78077248 + 58652736 58653198 LTR2 463 + 0 463 72963 360 14 15 88 chain 20782 chr18 78077248 + 58658538 58658838 L1PB4 2604 - 736 1030 124670 43 0 1 33 7 11 27 1 0 42 14 4 133 chain 14592 chr18 78077248 + 58665856 58666028 L1PA7 6471 + 6291 6462 142619 7 1 0 164 chain 4497 chr18 78077248 + 58667904 58668013 LTR41B 718 + 598 707 200818 15 2 0 7 1 2 18 20 22 4 1 0 41 chain 30651 chr18 78077248 + 58669875 58670327 MLT2A1 477 - 0 477 83117 8 0 4 25 33 55 177 6 7 21 0 1 8 6 3 168 chain 2783 chr18 78077248 + 58688204 58688252 MER41G 495 - 232 277 228987 4 1 0 33 2 0 8 chain 69095 chr18 78077248 + 58712717 58713930 L1PB1 5432 + 4205 5421 48763 156 1 0 25 0 2 57 15 11 7 0 4 27 13 17 37 22 23 58 23 59 20 3 0 185 0 1 89 0 1 4 3 0 115 17 15 20 1 0 6 1 0 12 22 16 45 9 8 11 1 0 43 2 1 14 3 1 9 19 11 11 9 6 14 2 0 24 1 0 22 1 0 13 1 0 9 4 0 7 chain 20852 chr18 78077248 + 58714045 58714297 L1PA6 6164 - 11 263 124453 252 chain 21538 chr18 78077248 + 58717566 58717855 L1PA6 6164 - 2 288 122008 10 3 0 135 0 7 6 8 1 127 chain 60524 chr18 78077248 + 58717951 58718630 L1PA3long 6157 - 0 682 52568 11 1 4 667 chain 92186 chr18 78077248 + 58718630 58719651 L1PA3long 6157 + 4450 5475 38906 860 0 4 161 chain 25642 chr18 78077248 + 58738392 58738671 AluYb8 318 - 4 282 101536 188 1 0 90 chain 80452 chr18 78077248 + 58741850 58742744 L1P1 4361 - 33 925 43405 23 1 0 155 1 0 714 chain 55671 chr18 78077248 + 58742744 58743345 L1PA2 6032 + 5429 6030 55327 601 chain 14700 chr18 78077248 + 58782663 58783009 L1PB1 5432 + 5105 5422 142270 33 1 0 8 1 0 12 5 1 10 2 0 6 0 3 42 3 1 16 4 3 41 1 0 15 1 0 6 59 44 26 1 0 18 2 1 13 1 0 12 1 0 6 chain 15086 chr18 78077248 + 58797198 58797374 L1PA5 6144 - 0 176 141068 176 chain 9883 chr18 78077248 + 58807885 58807992 L1HS 6032 - 1 108 161160 107 chain 91573 chr18 78077248 + 58811991 58812989 L1PA2 6032 + 5022 6021 39099 851 0 1 147 chain 21061 chr18 78077248 + 58814802 58815137 THE1B 368 + 0 349 123686 44 20 26 12 4 10 77 1 0 32 0 1 5 3 7 16 1 0 10 1 0 109 chain 23847 chr18 78077248 + 58838109 58838388 AluSp 311 + 15 294 111196 279 chain 11090 chr18 78077248 + 58841347 58841471 L1PA3long 6157 - 0 128 155848 55 0 4 69 chain 114707 chr18 78077248 + 58845351 58846933 THE1B-int 1605 + 0 1605 32880 47 0 1 19 0 4 47 54 0 119 5 12 46 14 15 87 0 64 227 18 20 78 4 0 554 0 1 254 0 1 9 chain 28425 chr18 78077248 + 58914393 58914720 L1PA7 6471 + 6140 6467 91486 327 chain 389605 chr18 78077248 + 58931664 58937714 L1PB1 5432 + 68 5420 10463 338 2 0 138 1 0 240 1 2 74 0 2 13 466 0 322 1 46 154 9 0 199 0 6 104 1 3 4 0 1 155 5 6 391 0 3 222 4 1 110 11 23 720 0 6 142 1 0 47 0 2 109 214 44 347 0 1 47 0 1 17 99 9 428 0 1 4 1 0 35 0 1 19 0 1 19 4 1 176 32 40 153 22 24 84 29 11 24 1 0 9 1 0 9 20 14 49 7 6 12 1 0 42 2 1 16 31 19 12 8 5 14 1 0 24 1 0 21 1 0 13 1 0 16 chain 37244 chr18 78077248 + 58932475 58932937 LTR2 463 + 0 463 73176 362 12 13 88 chain 7638 chr18 78077248 + 58935707 58935820 L1PB1 5432 + 5114 5219 173300 24 1 0 9 1 0 10 6 2 8 2 0 52 chain 29646 chr18 78077248 + 58964323 58964643 AluYb8 318 + 0 318 86085 132 2 0 186 chain 123330 chr18 78077248 + 58969859 58971425 THE1A-int 1579 + 0 1579 29937 12 3 5 99 5 4 322 0 1 59 3 1 848 0 12 206 0 1 9 chain 27665 chr18 78077248 + 58971427 58971779 THE1A 353 + 2 353 94166 108 11 10 233 chain 551459 chr18 78077248 + 58977836 58983964 L1PA3long 6157 - 2 6151 1257 538 0 1 315 0 1 721 0 23 1133 0 1 632 0 4 1377 9 0 668 1 0 24 0 7 13 7 0 323 9 10 358 chain 7273 chr18 78077248 + 58998436 58998639 MLT2B4 540 - 342 540 175637 63 101 96 39 chain 9229 chr18 78077248 + 59058827 59058936 U6 107 + 0 107 164397 19 2 0 88 chain 40147 chr18 78077248 + 59078452 59079231 L1PB1 5432 + 4780 5427 69112 323 64 0 10 42 0 21 2 0 11 2 1 9 8 4 8 2 0 50 19 31 33 1 0 11 40 23 12 4 1 18 2 0 24 2 1 20 1 0 13 1 0 14 1 0 4 2 0 5 chain 41685 chr18 78077248 + 59105766 59106330 L1PA16 3655 + 3018 3585 67045 26 0 3 157 1 0 87 2 0 94 1 3 129 0 4 57 3 0 7 chain 4617 chr18 78077248 + 59176168 59176224 L1PB1 5432 + 5166 5222 199431 56 chain 9219 chr18 78077248 + 59176244 59176428 L1PB1 5432 + 5240 5404 164458 41 1 0 15 25 13 18 8 5 14 2 0 24 1 0 21 1 0 13 chain 257707 chr18 78077248 + 59179907 59182759 L1HS 6032 - 3176 6031 15829 590 0 4 2006 1 0 255 chain 36755 chr18 78077248 + 59182760 59183178 L1PA2 6032 + 5617 6029 73870 188 1 2 214 7 0 8 chain 497497 chr18 78077248 + 59184969 59191288 L1PA7 6471 + 416 6454 6980 521 9 12 780 0 1 29 1 0 63 4 0 5 1 5 227 6 7 566 9 0 77 308 1 279 1 0 34 5 8 132 1 0 76 2 5 13 0 4 6 2 10 226 1 0 311 3 4 17 0 1 390 0 1 82 0 4 356 1 5 258 0 1 476 0 2 210 5 0 79 0 2 96 1 0 51 2 0 324 0 7 133 0 1 140 chain 479193 chr18 78077248 + 59225170 59231402 L1PA6 6164 - 3 5560 7757 8 2 0 2909 0 4 155 7 13 297 685 0 448 7 0 39 0 1 233 0 1 577 0 1 54 0 4 564 0 2 247 chain 61542 chr18 78077248 + 59228551 59229233 L1PA3long 6157 - 0 692 52095 138 0 7 539 0 3 5 chain 29025 chr18 78077248 + 59235079 59235638 L1PA11 4918 - 289 849 88884 18 60 44 13 1 0 15 42 31 17 5 4 15 2 0 51 0 7 8 3 0 12 7 6 55 1 0 22 0 22 154 6 14 52 chain 6725 chr18 78077248 + 59238866 59238947 LTR43 600 - 0 81 179506 81 chain 9999 chr18 78077248 + 59252572 59252691 MER85 139 + 10 139 160583 79 0 10 40 chain 4224 chr18 78077248 + 59258797 59258860 MLT1B 390 + 4 71 204241 51 1 5 11 chain 10724 chr18 78077248 + 59280936 59281096 MER34C_ 573 + 32 198 157306 102 24 30 34 chain 21537 chr18 78077248 + 59283875 59284100 AluYa5 310 + 85 310 122018 225 chain 53375 chr18 78077248 + 59292533 59293246 MER4E1 777 + 54 773 56788 80 5 7 48 0 1 242 0 13 65 1 0 20 24 15 228 chain 9616 chr18 78077248 + 59302153 59302342 MER39 703 + 0 198 162505 17 4 3 50 3 0 10 12 0 11 6 16 16 3 19 11 1 0 45 chain 31726 chr18 78077248 + 59302343 59302738 MER11B 1079 - 682 1079 81284 80 1 5 48 3 0 11 10 11 242 chain 8384 chr18 78077248 + 59314245 59314622 LTR37A 408 - 0 399 168941 17 2 0 23 6 8 29 61 66 60 159 176 20 chain 25238 chr18 78077248 + 59345274 59345796 LTR49 580 - 69 580 103548 11 1 0 19 1 0 4 84 80 13 32 23 114 0 2 35 14 18 21 8 6 33 1 0 56 3 4 72 chain 3682 chr18 78077248 + 59352447 59352527 L1MD2 1676 - 204 284 212194 20 26 26 34 chain 6620 chr18 78077248 + 59366072 59366191 MLT2D 439 - 320 439 180304 30 1 0 26 22 23 40 chain 113286 chr18 78077248 + 59367295 59368580 L1PA4 6152 - 16 1304 33285 134 0 1 699 0 4 70 1 0 292 1 0 88 chain 11819 chr18 78077248 + 59370692 59370841 LTR26 622 + 473 622 152948 149 chain 28851 chr18 78077248 + 59382543 59382852 L1PA2 6032 - 2832 3141 88815 309 chain 260021 chr18 78077248 + 59382852 59385687 L1PA2 6032 + 3200 6032 15696 917 8 5 1910 chain 20643 chr18 78077248 + 59385692 59385978 MER41C 542 + 259 542 125151 51 7 8 10 4 0 214 chain 12412 chr18 78077248 + 59395247 59395386 L1PA5 6144 - 12 151 150588 139 chain 38871 chr18 78077248 + 59417221 59417663 L1PA5 6144 - 12 454 70910 442 chain 34906 chr18 78077248 + 59417663 59418068 L1PA5 6144 + 5269 5675 76336 25 1 0 104 0 2 275 chain 13564 chr18 78077248 + 59434449 59434640 L1MA3 4352 - 35 218 146116 29 1 0 5 2 1 22 2 0 25 4 0 101 chain 17574 chr18 78077248 + 59435519 59435822 THE1B 368 + 0 306 134066 63 6 7 43 3 1 54 2 1 21 17 24 10 6 5 13 3 2 62 chain 39943 chr18 78077248 + 59448294 59448883 L1PB1 5432 + 4746 5327 69403 105 1 2 250 0 11 24 26 20 9 2 0 52 1 0 16 3 2 44 2 1 21 14 5 19 chain 11456 chr18 78077248 + 59507407 59507542 MLT1A0 366 + 215 350 154483 135 chain 5767 chr18 78077248 + 59509095 59509230 MER58A 224 - 40 177 187466 23 42 43 24 1 2 45 chain 4622 chr18 78077248 + 59532302 59532395 MER21C 908 - 817 907 199391 36 24 23 5 2 0 26 chain 26078 chr18 78077248 + 59539183 59539573 MSTA 426 - 18 426 99714 110 0 1 44 40 50 44 10 16 29 0 1 113 chain 58714 chr18 78077248 + 59564642 59565374 MER4E1 777 - 7 774 53574 184 0 7 29 1 9 71 1 5 28 1 2 87 0 19 124 0 1 179 5 0 22 chain 29767 chr18 78077248 + 59570774 59571089 L1HS 6032 + 5717 6032 85584 315 chain 27056 chr18 78077248 + 59595214 59595617 MSTA 426 - 18 426 96089 46 2 1 25 0 3 104 17 23 54 15 11 37 3 4 100 chain 25675 chr18 78077248 + 59652460 59652862 THE1C 375 + 8 375 101388 169 76 41 157 chain 26262 chr18 78077248 + 59667379 59667734 THE1B 368 + 0 368 98970 44 0 15 113 12 11 9 2 0 81 0 1 94 chain 26015 chr18 78077248 + 59672444 59672798 THE1A 353 - 0 353 99961 52 3 0 130 1 2 59 1 0 21 3 5 84 chain 84533 chr18 78077248 + 59672798 59673920 THE1A-int 1579 - 0 1578 41707 9 1 2 37 60 517 239 3 1 773 chain 7618 chr18 78077248 + 59673921 59674014 THE1A 353 - 0 93 173425 93 chain 18655 chr18 78077248 + 59674017 59674254 THE1A 353 - 113 350 131067 130 2 1 26 0 1 79 chain 21622 chr18 78077248 + 59681572 59681831 AluSg7 307 - 15 275 121692 160 0 1 99 chain 29658 chr18 78077248 + 59694516 59694978 MER4A1 472 - 2 472 86035 195 32 11 18 0 21 37 1 3 113 20 26 10 13 13 23 chain 43904 chr18 78077248 + 59701577 59702156 THE1B-int 1605 + 1013 1600 64330 46 0 3 6 0 1 231 14 11 111 0 9 20 10 8 141 chain 22518 chr18 78077248 + 59702764 59703013 L1PA5 6144 - 3 252 117950 249 chain 389009 chr18 78077248 + 59715937 59720177 L1PA3long 6157 - 0 4249 10485 849 0 4 3380 0 5 11 chain 5630 chr18 78077248 + 59723250 59723336 MADE1 96 - 0 96 188764 41 11 21 34 chain 32415 chr18 78077248 + 59730940 59731314 L1PA5 6144 + 5763 6137 80177 374 chain 46063 chr18 78077248 + 59763763 59764253 L1HS 6032 - 0 490 61983 490 chain 53046 chr18 78077248 + 59764253 59764819 L1HS 6032 + 4965 5531 56988 566 chain 2995 chr18 78077248 + 59767617 59767654 MSTB2 466 - 331 368 225120 37 chain 21830 chr18 78077248 + 59785013 59785324 L1MA4 2864 - 221 516 120899 144 20 5 109 1 0 37 chain 40234 chr18 78077248 + 59804182 59804716 MLT2A2 560 + 0 560 68974 33 0 5 99 0 5 88 0 1 175 9 20 124 0 4 6 chain 49059 chr18 78077248 + 59833645 59834299 L1PA8 5853 + 5201 5853 59706 173 0 1 58 0 1 123 8 7 44 2 0 13 0 4 54 1 0 8 2 0 53 6 5 15 2 1 92 chain 4492 chr18 78077248 + 59838371 59838423 L1ME1 1623 - 1389 1441 200876 52 chain 78168 chr18 78077248 + 59860062 59861041 L1PA10 4194 - 44 1042 44431 34 3 0 31 0 2 120 0 11 6 1 2 13 0 1 278 0 4 59 0 2 292 0 1 142 chain 29780 chr18 78077248 + 59891206 59891560 L1PA6 6164 - 2 357 85541 335 0 1 19 chain 30574 chr18 78077248 + 59908114 59908542 MER83 447 + 0 439 83253 162 1 0 93 6 22 119 20 16 27 chain 113468 chr18 78077248 + 59937882 59939193 L1PA6 6164 - 2 1371 33232 298 0 53 412 0 1 76 0 4 525 chain 4196 chr18 78077248 + 59940908 59940990 MER3 215 + 113 198 204591 17 22 25 43 chain 15971 chr18 78077248 + 59948177 59948374 MER107 203 + 0 203 138453 173 0 6 24 chain 25951 chr18 78077248 + 59990604 59990947 THE1B 368 + 0 368 100202 24 1 0 15 1 16 80 0 1 36 2 1 149 0 11 35 chain 7708 chr18 78077248 + 59998044 59998141 HY3 101 + 0 96 172879 50 1 0 46 chain 23698 chr18 78077248 + 60059538 60059841 AluSc 308 - 4 308 112041 242 9 10 52 chain 33967 chr18 78077248 + 60062558 60063000 MLT2A1 477 + 0 477 77666 169 4 1 215 4 0 6 5 43 31 0 4 8 chain 4053 chr18 78077248 + 60068048 60068097 MER63B 433 - 348 397 206605 49 chain 4956 chr18 78077248 + 60069821 60070181 MLT1B 390 - 15 381 195632 38 282 288 40 chain 7992 chr18 78077248 + 60078295 60078396 MLT1D 503 - 2 103 171108 101 chain 36164 chr18 78077248 + 60086548 60086998 L1PA6 6164 + 5712 6161 74688 110 5 4 177 2 1 11 2 3 143 chain 91266 chr18 78077248 + 60106565 60107580 L1PA3long 6157 - 0 1013 39211 97 1 0 682 1 0 234 chain 46479 chr18 78077248 + 60115161 60115716 MLT2A2 560 + 0 560 61616 76 2 6 121 0 1 356 chain 240132 chr18 78077248 + 60136581 60140110 L1MA2 4263 - 388 3834 16767 50 0 3 12 3 0 67 0 1 79 1 0 78 17 12 57 8 7 434 0 1 125 58 13 21 1 0 3 0 2 108 7 8 12 33 0 6 0 2 5 2 1 71 5 0 40 6 7 6 3 0 73 31 19 6 3 0 4 0 1 65 7 12 180 5 3 42 9 5 119 0 3 45 1 0 97 4 0 80 0 2 5 1 0 5 15 13 11 0 7 69 20 22 309 0 1 35 0 5 68 0 4 154 2 0 75 0 1 52 2 1 248 4 0 13 0 4 96 15 18 109 0 1 15 3 5 59 1 0 54 chain 60772 chr18 78077248 + 60140247 60141132 L1M1 2793 - 1099 1982 52438 9 0 1 8 0 1 4 1 0 398 1 2 6 6 0 14 4 0 47 3 6 18 1 0 6 0 2 169 1 0 102 1 0 7 62 66 17 chain 6649 chr18 78077248 + 60145280 60145401 MER85 139 + 0 134 180101 31 7 8 29 7 9 12 0 10 35 chain 10713 chr18 78077248 + 60149574 60149691 HERV17-int 4347 + 4229 4346 157361 117 chain 28262 chr18 78077248 + 60150006 60150323 LTR17 781 + 0 326 92067 119 0 9 198 chain 4274 chr18 78077248 + 60155847 60155974 Charlie1a 1436 + 4 127 203561 14 63 59 50 chain 9704 chr18 78077248 + 60169531 60169655 L1MB5 1630 + 796 922 162062 80 1 3 43 chain 5078 chr18 78077248 + 60172040 60172101 MER47B 469 + 338 399 194320 61 chain 11196 chr18 78077248 + 60227100 60227234 MER2 342 + 111 248 155435 11 0 3 123 chain 4202 chr18 78077248 + 60285739 60285810 MER5A 189 - 117 189 204513 37 13 14 21 chain 17458 chr18 78077248 + 60299647 60299984 MER1B 344 - 0 344 134361 64 25 28 149 83 87 16 chain 21722 chr18 78077248 + 60307153 60307662 L1PB1 5432 + 5009 5422 121309 88 83 17 24 1 0 4 3 2 9 21 15 52 2 1 16 1 0 45 1 0 11 26 15 18 1 0 5 11 9 8 2 0 22 1 0 22 1 0 12 1 0 18 chain 5745 chr18 78077248 + 60309346 60309445 MLT1D 503 + 63 171 187687 50 23 32 26 chain 43958 chr18 78077248 + 60319804 60320304 LTR2C 499 + 0 499 64254 102 1 0 397 chain 192341 chr18 78077248 + 60342225 60344453 L1PA6 6164 - 17 2246 19832 127 11 13 5 2 0 763 2 3 308 1 0 249 1 0 236 0 1 28 0 1 495 chain 29113 chr18 78077248 + 60351982 60352287 AluYb8 318 - 13 318 88495 305 chain 7214 chr18 78077248 + 60403112 60403189 L1PA3long 6157 + 6078 6155 175980 77 chain 8786 chr18 78077248 + 60403424 60403537 MER5A1 166 + 15 131 166736 83 0 3 30 chain 9890 chr18 78077248 + 60405856 60406076 MER44A 345 - 85 322 161124 82 3 0 6 14 16 6 0 2 32 50 66 27 chain 4961 chr18 78077248 + 60411024 60411084 L1MC5 759 - 48 108 195573 60 chain 9100 chr18 78077248 + 60439270 60439421 Looper 901 - 389 550 165072 12 2 0 26 28 40 83 chain 6072 chr18 78077248 + 60486197 60486303 MER63D 473 - 212 330 184639 39 15 27 52 chain 22452 chr18 78077248 + 60493955 60494238 AluSx4 309 + 2 286 118237 105 1 2 177 chain 3380 chr18 78077248 + 60523366 60523403 MER2 342 + 252 289 217464 37 chain 31156 chr18 78077248 + 60530735 60531195 MER41B 635 - 180 635 82240 28 36 29 93 0 2 67 4 5 10 3 1 91 0 1 128 chain 5726 chr18 78077248 + 60540970 60541040 MER6A 605 - 71 141 187875 70 chain 565525 chr18 78077248 + 60573525 60579547 L1HS 6032 + 0 6031 183 1283 0 9 4739 chain 24937 chr18 78077248 + 60629547 60629840 AluSp 311 - 19 310 105128 160 2 0 131 chain 27859 chr18 78077248 + 60650930 60651249 L1PA5 6144 - 14 334 93495 140 0 1 179 chain 33727 chr18 78077248 + 60652956 60653334 L1PA3long 6157 + 5778 6152 78051 10 4 0 364 chain 16496 chr18 78077248 + 60662229 60662540 THE1D 372 + 15 332 136936 12 3 2 22 9 0 23 4 5 87 59 74 92 chain 23040 chr18 78077248 + 60667542 60667828 AluSc5 308 + 6 291 115449 251 1 0 34 chain 41500 chr18 78077248 + 60670357 60670890 MLT2A2 560 + 1 560 67279 132 18 19 51 0 1 160 0 19 13 0 5 159 chain 84934 chr18 78077248 + 60701352 60702283 L1PA5 6144 - 0 931 41541 931 chain 25616 chr18 78077248 + 60723059 60723354 AluY 311 + 16 311 101640 295 chain 29859 chr18 78077248 + 60735620 60735994 THE1C 375 + 0 375 85244 158 0 1 20 1 2 169 1 0 25 chain 29912 chr18 78077248 + 60740312 60740630 AluYb8 318 - 0 318 85063 318 chain 4831 chr18 78077248 + 60781415 60781529 MER33 330 + 14 129 197007 48 43 44 23 chain 9995 chr18 78077248 + 60832197 60832314 L1PA3long 6157 + 6040 6156 160610 112 1 0 4 chain 8739 chr18 78077248 + 60852944 60853081 MIR 256 - 87 224 166982 24 20 21 44 1 0 48 chain 37106 chr18 78077248 + 60868756 60869212 L1PA7 6471 + 6006 6461 73372 261 1 0 194 chain 23504 chr18 78077248 + 60918623 60918888 AluY 311 + 29 293 113106 94 1 0 170 chain 13064 chr18 78077248 + 60973988 60974185 MER30 238 + 0 230 147973 13 9 33 61 4 16 76 3 0 31 chain 39837 chr18 78077248 + 61030453 61030875 L1HS 6032 - 0 422 69564 422 chain 3575 chr18 78077248 + 61082211 61082275 MER3 215 + 89 184 214046 34 12 43 18 chain 72857 chr18 78077248 + 61117010 61117824 SVA_D 2077 - 5 1263 47090 628 0 224 153 2 0 14 0 222 17 chain 17714 chr18 78077248 + 61118783 61118983 MER50 708 - 22 223 133664 111 0 1 89 chain 44241 chr18 78077248 + 61118999 61120528 LTR71B 605 - 0 605 63896 178 292 0 7 0 8 60 4 0 97 7 4 102 1 0 4 4 3 85 631 0 57 chain 4277 chr18 78077248 + 61119293 61119341 LTR71B 605 + 0 48 203508 48 chain 26174 chr18 78077248 + 61126431 61126807 THE1C 375 - 0 375 99306 14 6 7 4 1 0 153 11 12 8 1 0 106 8 7 64 chain 12869 chr18 78077248 + 61158080 61158353 L1PB1 5432 - 9 262 148758 22 1 0 9 1 0 17 6 5 24 2 0 14 9 6 14 31 22 10 4 3 41 1 0 15 2 1 50 chain 24586 chr18 78077248 + 61161285 61161580 AluSg 306 + 11 306 107056 295 chain 86329 chr18 78077248 + 61168326 61169309 L1PA5 6144 - 48 1031 41032 983 chain 21123 chr18 78077248 + 61195051 61195377 THE1B 368 + 0 342 123479 44 0 6 6 0 9 104 5 3 34 4 8 92 23 22 14 chain 25843 chr18 78077248 + 61221998 61222376 THE1D 372 + 0 372 100682 39 17 8 138 0 8 9 17 11 125 0 1 33 chain 23461 chr18 78077248 + 61268234 61268695 L1PA11 4918 - 289 712 113310 17 48 34 11 2 0 13 1 0 15 13 9 10 2 0 3 3 0 9 5 1 18 2 1 14 2 0 77 7 6 164 7 3 18 chain 6875 chr18 78077248 + 61276231 61276320 AluJr4 308 - 58 286 178396 70 0 139 19 chain 169608 chr18 78077248 + 61295534 61297432 L1PA3long 6157 + 3224 6157 22103 183 0 1036 1568 2 1 145 chain 3930 chr18 78077248 + 61305974 61306019 L1PA3long 6157 + 5925 5970 208426 45 chain 16266 chr18 78077248 + 61306020 61306203 L1PA3long 6157 + 5972 6152 137561 169 3 0 11 chain 38139 chr18 78077248 + 61315339 61315789 LTR14C 587 + 0 451 71931 102 0 1 348 chain 5906 chr18 78077248 + 61315789 61315858 L1PA8A 6298 - 330 399 186128 69 chain 26893 chr18 78077248 + 61329845 61330198 THE1A 353 + 0 353 96652 111 1 0 114 3 4 124 chain 91566 chr18 78077248 + 61332514 61333588 MER11C 1089 + 0 1073 39105 573 3 2 97 1 0 219 0 1 181 chain 30540 chr18 78077248 + 61335360 61335806 L1PA8 5853 - 0 441 83354 93 1 0 19 2 1 39 25 23 28 0 2 40 3 1 43 1 0 152 chain 9719 chr18 78077248 + 61342937 61343080 L1PA8 5853 - 0 141 161987 93 1 0 16 15 14 18 chain 5413 chr18 78077248 + 61345948 61346072 Charlie1 1172 - 214 333 190868 36 37 38 7 6 0 38 chain 284550 chr18 78077248 + 61356069 61359986 L1PA10 4194 + 252 4137 14381 19 47 38 4 1 0 22 2 0 18 16 14 5 0 3 7 8 0 12 4 0 9 1 0 69 18 7 10 6 17 92 25 14 89 1 0 87 1 0 57 16 0 127 0 2 194 4 0 5 0 3 92 7 7 245 26 25 100 3 1 5 0 2 59 4 5 415 6 7 83 0 4 397 0 1 38 0 1 13 4 8 94 0 3 155 9 8 187 2 0 159 0 8 46 0 2 193 16 18 5 0 3 6 3 0 546 3 0 20 chain 6573 chr18 78077248 + 61362586 61362726 MSTA 426 - 251 426 180672 15 0 6 10 35 42 24 1 23 55 chain 8553 chr18 78077248 + 61366103 61366301 MER53 195 - 0 183 168001 70 80 65 48 chain 3772 chr18 78077248 + 61375872 61375917 L2a 937 - 781 826 210776 45 chain 23617 chr18 78077248 + 61376573 61376849 AluY 311 + 10 287 112487 113 4 5 159 chain 81067 chr18 78077248 + 61381297 61382332 MER11B 1079 - 30 1079 43156 120 13 13 39 0 1 86 7 20 223 6 5 4 0 1 78 0 2 232 0 2 188 4 0 35 chain 39826 chr18 78077248 + 61401316 61401748 L1PA3long 6157 + 5715 6147 69585 432 chain 66835 chr18 78077248 + 61401757 61402680 L1MA2 4263 + 215 1163 49714 34 0 2 5 0 2 146 1 0 62 0 6 10 1 0 4 0 1 249 2 0 36 0 15 62 12 14 79 26 27 194 chain 68068 chr18 78077248 + 61415420 61416330 L1PA8 5853 + 4957 5853 49214 52 2 0 58 9 5 12 2 3 475 1 0 45 3 0 71 2 1 8 3 1 52 2 1 19 10 9 84 chain 30071 chr18 78077248 + 61422114 61422437 AluYb8 318 - 0 318 84603 195 5 0 123 chain 26145 chr18 78077248 + 61426853 61427201 THE1A 353 + 6 353 99422 25 1 0 44 0 1 26 9 8 243 chain 131135 chr18 78077248 + 61427201 61428769 THE1A-int 1579 + 0 1573 27827 15 0 2 90 0 3 336 0 1 623 2 1 502 chain 27628 chr18 78077248 + 61428775 61429135 THE1A 353 + 0 353 94270 110 1 0 183 7 1 59 chain 44342 chr18 78077248 + 61457996 61458532 L1PA7 6471 + 5933 6468 63768 198 0 1 176 7 6 5 1 0 149 chain 26100 chr18 78077248 + 61461648 61461952 AluYk4 311 + 6 301 99620 288 9 0 7 chain 25816 chr18 78077248 + 61490471 61490772 AluSq10 312 + 10 311 100807 301 chain 7601 chr18 78077248 + 61496825 61496910 L1PA7 6471 - 12 97 173536 85 chain 31300 chr18 78077248 + 61521439 61521883 L1MA3 4352 - 487 933 81992 130 0 1 8 0 1 23 25 25 146 1 0 36 0 1 75 chain 339734 chr18 78077248 + 61530029 61533652 L1HS 6032 + 2407 6030 11906 3623 chain 6891 chr18 78077248 + 61596090 61596171 L1P1 4361 - 33 113 178259 23 1 0 57 chain 411763 chr18 78077248 + 61607610 61614001 L1PA7 6471 + 5 6461 9751 131 31 17 79 129 326 90 0 19 50 151 237 89 64 68 135 10 35 76 1 0 4 0 1 284 32 34 37 48 34 10 0 13 852 9 8 228 0 1 981 708 429 637 0 1 4 1 0 34 4 0 102 0 1 413 1 14 69 1 0 73 1 0 12 2 1 69 0 1 423 0 17 164 2 1 6 0 1 16 0 1 128 chain 33597 chr18 78077248 + 61619169 61619532 L1PA2 6032 + 5665 6032 78243 303 0 4 60 chain 135851 chr18 78077248 + 61639726 61641309 L1PA6 6164 - 2 1587 26871 140 14 9 8 0 3 169 2 1 885 0 5 365 chain 18649 chr18 78077248 + 61657764 61657979 L1PA4 6152 - 13 228 131090 137 1 0 25 0 1 52 chain 23854 chr18 78077248 + 61659924 61660324 LTR3A 482 - 64 455 111162 11 6 5 21 0 1 31 0 1 33 13 14 29 56 44 118 0 1 82 chain 53038 chr18 78077248 + 61691182 61691760 L1PA3long 6157 - 0 578 56993 578 chain 12266 chr18 78077248 + 61702691 61702973 L1PB1 5432 - 5 264 151127 5 2 0 18 1 0 13 1 0 21 1 0 15 11 9 14 2 0 5 2 0 17 9 0 10 2 0 4 1 0 16 1 0 21 23 22 16 1 3 50 chain 88414 chr18 78077248 + 61710046 61711600 LTR12C 1709 + 0 1709 40217 29 46 55 102 100 115 66 25 33 61 2 0 10 7 0 37 19 17 72 6 0 12 0 1 120 41 0 103 0 40 83 0 41 71 2 51 96 69 14 71 11 16 129 1 102 78 1 0 84 chain 1859 chr18 78077248 + 61710760 61710801 LTR12C 1709 + 848 889 125197 41 chain 30487 chr18 78077248 + 61740897 61741227 L1PA2 6032 - 1 331 83454 330 chain 25047 chr18 78077248 + 61756856 61757214 THE1B 368 - 0 368 104561 68 2 0 91 9 7 28 1 0 101 14 29 44 chain 17711 chr18 78077248 + 61803558 61803873 THE1D 372 - 42 372 133676 92 3 19 26 26 27 72 11 15 5 3 0 17 9 6 51 chain 80925 chr18 78077248 + 61811905 61812802 MER11D 897 + 0 897 43229 897 chain 25182 chr18 78077248 + 61817900 61818195 L1PA7 6471 - 7 302 103837 295 chain 22563 chr18 78077248 + 61827638 61827992 THE1D 372 - 16 361 117749 82 1 0 81 1 0 6 20 21 64 1 2 53 17 8 28 chain 40206 chr18 78077248 + 61842463 61843084 LTR9B 643 - 0 643 69020 35 6 0 6 0 5 65 2 16 22 4 5 18 48 49 33 0 1 25 0 1 98 0 1 33 6 12 6 1 0 6 1 0 206 chain 24305 chr18 78077248 + 61866287 61866581 L1PA7 6471 + 6174 6467 108634 251 1 0 42 chain 528853 chr18 78077248 + 61893630 61899704 L1PA4 6152 - 9 6146 4318 835 0 4 2127 1 0 465 4 5 95 0 1 64 0 32 111 11 12 5 1 0 368 3 17 286 1 0 152 4 13 153 1 2 18 0 1 52 0 1 290 1 0 93 0 1 136 0 1 797 chain 5685 chr18 78077248 + 61915306 61915377 MLT1C 463 - 27 98 188246 71 chain 28806 chr18 78077248 + 61924517 61924825 AluYb8 318 - 10 318 89863 308 chain 214689 chr18 78077248 + 61933297 61935765 L1PA4 6152 - 0 2479 18186 6 0 5 31 19 20 796 2 1 868 0 1 72 0 4 159 0 3 499 2 0 14 chain 30043 chr18 78077248 + 61953862 61954342 MLT2A1 477 - 0 464 84676 49 84 71 168 1 0 19 4 1 31 0 1 124 chain 29350 chr18 78077248 + 61954431 61954739 AluYa5 310 - 2 310 87295 308 chain 145253 chr18 78077248 + 61956484 61958108 L1PA4 6152 - 1 1627 25285 186 4 0 490 0 1 320 0 5 624 chain 21817 chr18 78077248 + 61965795 61966046 AluY 311 + 49 301 120956 83 0 1 168 chain 3076 chr18 78077248 + 61975865 61975942 MADE1 96 - 1 96 223389 29 28 46 20 chain 42997 chr18 78077248 + 62008773 62009317 MLT2A2 560 - 0 559 65416 8 0 4 130 0 11 406 chain 28263 chr18 78077248 + 62010924 62011310 MLT2A1 477 - 85 477 92066 119 11 10 89 1 5 43 0 1 15 0 2 108 chain 20635 chr18 78077248 + 62029448 62029712 THE1C 375 - 105 375 125172 124 1 5 74 1 3 64 chain 3976 chr18 78077248 + 62039703 62039749 MADE1 96 - 50 96 207750 46 chain 525744 chr18 78077248 + 62091512 62097637 L1PA5 6144 + 0 6144 4608 1169 9 0 175 1 0 103 0 4 1127 0 2 176 0 1 399 5 4 335 0 4 373 0 9 160 0 1 424 0 1 1309 0 8 360 chain 282324 chr18 78077248 + 62118409 62121566 L1PA4 6152 - 1 3154 14515 146 7 0 1375 0 1 737 0 2 892 chain 45071 chr18 78077248 + 62122191 62122809 L1PA8A 6298 + 4604 5877 62969 96 3 1 269 1 0 5 0 1 162 0 620 46 5 42 31 chain 58185 chr18 78077248 + 62122812 62123509 L1PA8 5853 - 1638 2335 53880 697 chain 126536 chr18 78077248 + 62123514 62126093 L1PA8 5853 + 4221 5842 28933 149 8 10 204 0 1 4 1 0 293 6 5 120 0 2 85 2 0 223 314 0 183 641 0 60 5 4 44 2 0 74 1 0 58 2 1 17 3 4 80 chain 24068 chr18 78077248 + 62125123 62125608 L1PA8 5853 + 5515 5845 109940 49 1 0 44 2 0 70 2 1 12 1 0 49 2 1 19 2 1 10 148 0 74 chain 4022 chr18 78077248 + 62125391 62125436 L1PA8 5853 + 5632 5677 207046 45 chain 5492 chr18 78077248 + 62125443 62125521 L1PA8 5853 + 5683 5760 190119 57 2 1 19 chain 11647 chr18 78077248 + 62138651 62138826 MER47B 469 - 100 320 153710 85 0 1 9 19 63 62 chain 3025 chr18 78077248 + 62155982 62156052 L1MB3 1562 + 1483 1552 224466 28 25 24 17 chain 4097 chr18 78077248 + 62204108 62204165 MLT2A2 560 - 0 75 205993 27 1 0 16 0 19 13 chain 21833 chr18 78077248 + 62231725 62231988 AluSc 308 - 6 270 120877 67 0 1 177 0 1 4 1 0 14 chain 19016 chr18 78077248 + 62238359 62239784 L1PA8A 6298 - 10 1130 35081 127 3 5 121 0 1 522 308 0 21 0 3 18 0 1 59 0 1 213 5 0 28 chain 533301 chr18 78077248 + 62239800 62245909 L1PA4 6152 + 8 6152 3804 120 0 14 224 7 11 203 1 0 368 4 0 1233 0 6 97 0 4 281 0 4 137 0 1 172 3 0 348 1 0 384 0 1 732 5 9 940 1 5 142 5 1 158 1 0 393 0 7 149 chain 5618 chr18 78077248 + 62245930 62246351 L1PA8A 6298 - 1132 1556 35081 265 8 9 63 3 5 82 chain 34133 chr18 78077248 + 62262557 62263062 LTR3B_ 500 - 38 500 77434 44 57 20 46 3 4 169 7 0 179 chain 60940 chr18 78077248 + 62271785 62272552 L1PA8 5853 - 748 1519 52367 21 0 2 73 3 1 20 0 4 160 1 0 45 0 1 444 chain 56084 chr18 78077248 + 62272552 62273268 L1PA8 5853 + 5142 5853 55076 54 0 2 364 1 0 46 2 0 69 1 0 11 1 0 52 2 1 21 1 0 91 chain 32150 chr18 78077248 + 62274496 62274850 L1PA4 6152 + 5797 6152 80611 241 0 1 113 chain 53310 chr18 78077248 + 62275584 62276161 SVA_D 2077 - 21 598 56824 577 chain 28595 chr18 78077248 + 62276162 62276503 SVA_D 2077 + 684 1335 90759 39 0 3 6 0 37 111 0 269 38 0 1 147 chain 24952 chr18 78077248 + 62298742 62299166 MSTA 426 + 6 426 105043 94 23 25 27 1 5 50 45 35 70 1 0 54 0 1 59 chain 46522 chr18 78077248 + 62315444 62316039 LTR12_ 688 - 0 688 61578 305 4 8 205 0 90 55 1 0 25 chain 52710 chr18 78077248 + 62338505 62339181 LTR12 884 + 0 861 57183 25 1 0 263 0 66 24 2 0 193 9 119 95 0 12 64 chain 29200 chr18 78077248 + 62348965 62349366 LTR7 482 + 0 482 88046 69 8 46 109 1 31 5 0 2 52 0 10 41 1 2 115 chain 281396 chr18 78077248 + 62349368 62352903 HERVH-int 3825 + 0 3825 14570 333 1 0 41 5 0 160 5 0 23 0 3 10 1 0 10 1 0 12 11 80 26 2 1 80 0 1 4 2 0 314 0 2 33 0 4 6 5 1 79 15 0 208 9 0 41 1 0 213 4 31 290 1 15 116 0 3 139 21 21 625 1 0 145 9 11 39 8 218 228 1 0 25 7 9 225 chain 27940 chr18 78077248 + 62354157 62354558 LTR7 482 + 0 482 93201 69 8 46 109 6 7 32 1 32 19 0 10 41 1 2 115 chain 54049 chr18 78077248 + 62357442 62358052 L1PA5 6144 + 5528 6138 56327 610 chain 29026 chr18 78077248 + 62385778 62386081 AluYa5 310 - 7 310 88874 303 chain 115249 chr18 78077248 + 62392010 62393429 LTR12C 1709 - 0 1709 32701 400 1 0 4 10 12 65 0 4 106 4 2 5 1 0 135 0 278 260 0 1 87 0 9 341 chain 23027 chr18 78077248 + 62398778 62399116 THE1B 368 + 0 342 115504 169 1 0 29 26 32 12 2 1 99 chain 14044 chr18 78077248 + 62450582 62450742 L1PA10 4194 - 139 299 144405 160 chain 38949 chr18 78077248 + 62488319 62488753 L1PA4 6152 - 11 445 70802 434 chain 6608 chr18 78077248 + 62523645 62523727 LTR9B 643 - 82 164 180394 82 chain 126875 chr18 78077248 + 62533056 62534473 L1PA4 6152 - 9 1431 28842 250 0 1 584 1 5 582 chain 99020 chr18 78077248 + 62547319 62548394 L1PA2 6032 + 4955 6029 37022 932 1 0 142 chain 4269 chr18 78077248 + 62552163 62552223 MADE1 96 - 0 91 203632 46 1 32 13 chain 5266 chr18 78077248 + 62573104 62573192 MLT1A0 366 - 53 139 192364 20 1 0 46 7 6 14 chain 6043 chr18 78077248 + 62621787 62621858 L1PA3long 6157 + 6086 6157 184870 71 chain 21453 chr18 78077248 + 62637854 62638100 L1PA2 6032 + 5786 6032 122321 246 chain 28123 chr18 78077248 + 62693844 62694267 L1PA8 5853 - 1 412 92559 88 3 0 4 1 0 19 3 2 59 1 0 68 8 6 41 2 1 72 16 13 38 chain 49499 chr18 78077248 + 62722061 62722645 L1PA5 6144 - 14 599 59388 304 0 1 280 chain 33735 chr18 78077248 + 62722646 62723031 L1PA5 6144 + 5151 5535 78035 143 1 0 241 chain 29616 chr18 78077248 + 62729871 62730188 AluYb9 318 + 0 317 86159 317 chain 15580 chr18 78077248 + 62738797 62739013 L1PB2 3958 - 120 332 139639 63 2 1 21 2 0 74 1 0 53 chain 2953 chr18 78077248 + 62741372 62741405 MER58A 224 - 145 178 226032 33 chain 31398 chr18 78077248 + 62755185 62755532 L1PA5 6144 - 795 1143 81525 343 0 1 4 chain 68528 chr18 78077248 + 62755532 62756351 L1PA5 6144 + 5329 6132 49025 561 0 1 97 12 17 20 22 0 107 chain 45373 chr18 78077248 + 62777723 62778236 MER9a2 513 - 0 513 62630 513 chain 5429 chr18 78077248 + 62805045 62805106 L1P3 4156 - 1284 1345 186431 61 chain 97333 chr18 78077248 + 62805106 62806186 L1PA4 6152 + 5064 6143 37474 834 1 0 245 chain 505331 chr18 78077248 + 62833650 62839680 L1PA5 6144 + 4 6144 6506 120 0 14 21 7 19 361 0 1 24 0 1 135 1 2 467 9 0 459 6 1 368 0 4 149 0 9 150 14 9 288 0 1 569 2 0 27 1 0 677 0 1 160 0 1 210 0 3 266 0 85 22 1 0 666 1 0 517 0 1 332 chain 55407 chr18 78077248 + 62840791 62841735 L1PB1 5432 + 4513 5416 55457 113 12 0 302 8 11 56 1 3 105 1 0 9 19 18 4 1 0 12 1 0 11 6 2 8 2 0 53 2 1 10 8 7 39 7 6 13 14 1 30 32 27 16 1 0 21 1 0 13 1 0 12 chain 13194 chr18 78077248 + 62851017 62851193 L1PA5 6144 + 5968 6144 147488 13 1 6 6 5 0 151 chain 30130 chr18 78077248 + 62890808 62891170 L1PA5 6144 + 4913 5275 84382 362 chain 34489 chr18 78077248 + 62891170 62891588 L1PA5 6144 + 5279 5696 76925 323 7 6 88 chain 31668 chr18 78077248 + 62896170 62896641 MLT2A1 477 - 0 470 81379 39 22 0 14 7 30 78 14 15 131 5 2 161 chain 10776 chr18 78077248 + 62932685 62932825 L1PA7 6471 + 6325 6468 157089 126 0 1 4 0 2 10 chain 22558 chr18 78077248 + 62946475 62946827 MER51B 395 - 0 395 117773 129 22 21 12 5 6 59 0 56 72 13 0 40 chain 23847 chr18 78077248 + 62954283 62954588 AluY 311 + 0 305 111194 72 0 3 56 0 2 160 5 0 12 chain 224747 chr18 78077248 + 62962323 62964793 L1PA3long 6157 - 4 2482 17615 133 0 1 910 0 1 461 0 5 857 0 1 109 chain 20403 chr18 78077248 + 62983496 62983746 L1PA7 6471 + 6217 6467 125884 250 chain 29327 chr18 78077248 + 63060446 63060756 AluYa5 310 - 0 310 87408 310 chain 4606 chr18 78077248 + 63079666 63079836 L1PB1 5432 + 5268 5420 199546 13 1 0 15 3 0 7 1 0 11 48 34 22 21 23 11 1 0 16 chain 39159 chr18 78077248 + 63086630 63087073 L1PA3long 6157 - 0 443 70534 443 chain 34289 chr18 78077248 + 63087073 63087440 L1PA3long 6157 + 5347 5714 77228 367 chain 29716 chr18 78077248 + 63104552 63104909 L1PA4 6152 + 5790 6152 85779 351 0 5 6 chain 6031 chr18 78077248 + 63124120 63124194 L1PB1 5432 - 643 717 184967 74 chain 63797 chr18 78077248 + 63147737 63148522 L1PA7 6471 - 10 793 51100 91 3 0 48 0 7 7 9 3 627 chain 28672 chr18 78077248 + 63189611 63189992 L1PA7 6471 + 6077 6468 90436 59 0 1 103 0 2 156 3 9 11 9 0 8 0 9 16 0 1 16 chain 106451 chr18 78077248 + 63202384 63203981 L1PB1 5432 + 3825 5392 35138 161 1 0 94 1 0 33 10 7 85 0 2 4 1 0 7 6 1 208 21 29 13 0 4 139 4 9 82 0 2 99 10 2 6 0 4 287 1 0 9 12 5 18 1 0 9 3 2 12 5 1 9 2 0 14 4 5 33 2 1 15 1 0 45 1 0 9 30 18 19 2 0 5 1 0 14 2 0 24 1 0 22 chain 53762 chr18 78077248 + 63212204 63212865 L1PA7 6471 + 5793 6459 56500 403 0 4 74 0 1 48 0 1 4 1 0 131 chain 128511 chr18 78077248 + 63222865 63224332 L1PA5 6144 - 1225 2690 28450 1246 2 0 219 chain 98262 chr18 78077248 + 63224332 63225526 L1PA5 6144 + 4936 6138 37182 105 0 2 12 0 5 209 4 0 18 1 0 95 0 1 374 0 4 21 0 1 195 18 11 10 0 7 132 chain 45499 chr18 78077248 + 63231910 63232557 LTR12 884 - 11 884 62498 73 0 18 26 0 8 47 38 131 193 2 0 39 0 1 60 0 2 91 0 107 44 9 8 25 chain 7690 chr18 78077248 + 63266846 63266941 MER47A 366 + 105 200 172989 95 chain 116872 chr18 78077248 + 63272307 63273747 LTR12C 1709 + 0 1702 32171 500 13 14 143 0 285 170 1 0 4 4 2 106 0 4 390 8 7 22 25 1 54 chain 49995 chr18 78077248 + 63300612 63301303 L1PA8 5853 + 5184 5853 59017 380 1 0 44 2 0 69 3 2 8 4 3 54 31 17 68 0 1 16 4 0 7 chain 33269 chr18 78077248 + 63318656 63319094 LTR71A 459 + 0 459 78773 129 14 36 35 1 2 243 2 0 14 chain 2599 chr18 78077248 + 63331106 63331151 MER31B 477 - 434 477 231707 20 6 4 19 chain 3097 chr18 78077248 + 63337317 63337353 L1PA3long 6157 - 160 197 222992 4 0 1 32 chain 17508 chr18 78077248 + 63337353 63337547 L1PA3long 6157 + 5962 6157 134241 190 0 1 4 chain 15827 chr18 78077248 + 63369258 63369441 L1PA5 6144 - 1 186 138859 178 0 2 5 chain 20983 chr18 78077248 + 63381004 63381267 AluSp 311 + 10 298 123978 43 10 35 210 chain 28298 chr18 78077248 + 63386638 63386943 AluYa5 310 + 0 304 91954 132 1 0 172 chain 182368 chr18 78077248 + 63406588 63408633 L1PA5 6144 - 2 2048 20751 790 3 0 538 0 1 371 0 3 343 chain 140659 chr18 78077248 + 63446538 63448045 L1HS 6032 - 0 1507 26044 1507 chain 2925 chr18 78077248 + 63540634 63540902 MER33 330 - 41 310 226586 21 215 216 32 chain 7310 chr18 78077248 + 63542312 63542416 MER30 238 + 131 238 175370 65 12 15 27 chain 15925 chr18 78077248 + 63570201 63570469 L1PB2 3958 + 3482 3753 138594 4 0 1 32 44 37 61 1 0 54 0 7 50 0 3 22 chain 165017 chr18 78077248 + 63597809 63600077 L1P3 4156 + 3 2185 22651 244 15 14 24 20 2 12 43 5 15 2 1 80 10 0 24 2 0 32 0 1 238 19 17 268 7 8 210 13 17 541 0 1 96 0 2 65 29 6 259 chain 72847 chr18 78077248 + 63600077 63600988 L1PA7 6471 + 5546 6465 46830 3 0 2 70 1 0 515 0 1 123 0 3 32 28 31 139 chain 18308 chr18 78077248 + 63619125 63619362 L1PA8A 6298 - 512 755 132061 154 0 8 51 2 0 30 chain 40933 chr18 78077248 + 63619363 63619870 L1PA8A 6298 + 5784 6291 67995 507 chain 8416 chr18 78077248 + 63650404 63650510 L1MA7 2200 - 491 597 168743 106 chain 27500 chr18 78077248 + 63672648 63672997 LTR12C 1709 - 672 1061 94652 18 1 42 140 1 0 189 chain 4818 chr18 78077248 + 63672997 63673076 LTR12C 1709 - 783 902 131221 49 0 40 30 chain 3233 chr18 78077248 + 63715781 63715845 MER67D 511 + 265 330 220379 22 12 3 8 0 10 22 chain 19066 chr18 78077248 + 63739939 63740278 THE1C 375 - 0 375 129918 25 1 0 88 57 89 108 15 22 30 2 0 13 chain 2947 chr18 78077248 + 63796221 63796257 L1MA8 2339 + 2063 2099 226160 36 chain 109983 chr18 78077248 + 63829856 63831112 L1PA5 6144 + 4877 6135 34221 649 0 1 11 0 1 596 chain 26680 chr18 78077248 + 63832122 63832417 AluYk4 311 - 10 305 97387 295 chain 17793 chr18 78077248 + 63854791 63855000 AluY 311 + 72 282 133435 54 0 1 155 chain 15561 chr18 78077248 + 63857905 63858100 MLT2A1 477 - 278 477 139699 26 0 4 169 chain 3137 chr18 78077248 + 63880884 63880921 MADE1 96 - 59 96 222230 37 chain 26777 chr18 78077248 + 63881903 63882243 THE1A 353 + 2 343 97060 128 0 2 70 1 0 141 chain 64559 chr18 78077248 + 63890299 63891066 LTR17 781 + 1 768 50772 326 1 0 5 0 1 435 chain 7532 chr18 78077248 + 63925279 63925491 THE1B 368 - 0 207 123409 143 11 9 23 2 0 21 1 0 11 chain 24573 chr18 78077248 + 63925498 63925765 AluYf4 310 + 43 310 107121 267 chain 3269 chr18 78077248 + 63925782 63925874 THE1B 368 - 221 313 123409 92 chain 63496 chr18 78077248 + 63937338 63938112 LTR17 781 - 9 781 51246 34 5 6 357 11 7 40 0 1 327 chain 85992 chr18 78077248 + 63941142 63942203 MER11B 1079 + 0 1079 41158 316 1 18 436 0 2 139 6 7 147 5 3 11 chain 42878 chr18 78077248 + 63958086 63958632 L1PA7 6471 + 5921 6470 65559 215 0 1 43 0 1 212 16 17 60 chain 96521 chr18 78077248 + 63959364 63960516 L1PA7 6471 - 10 1162 37667 282 0 1 564 1 0 305 chain 272684 chr18 78077248 + 63960516 63964337 L1P2 5180 + 1478 4990 15032 115 1 0 236 1 0 26 1 4 348 0 2 70 0 1 28 23 11 73 10 14 771 3 1 5 2 0 1227 4 1 219 301 2 18 31 32 308 chain 25500 chr18 78077248 + 64010723 64011024 AluSg4 309 - 8 309 102222 301 chain 435922 chr18 78077248 + 64039429 64044941 HERVL-int 5654 + 0 5528 9170 653 0 2 45 1 0 4 6 4 1547 0 1 233 1 2 227 6 5 132 0 1 520 0 1 498 7 8 137 5 4 110 1 18 90 26 17 528 0 1 114 4 7 80 0 2 234 18 18 285 chain 26821 chr18 78077248 + 64063359 64063726 LTR12D 1347 + 905 1347 96909 115 7 81 20 8 9 217 chain 13467 chr18 78077248 + 64081160 64081340 L1P3 4156 - 1416 1591 146461 48 7 1 61 0 1 64 chain 125103 chr18 78077248 + 64081350 64082948 L1PA7 6471 + 4885 6469 29360 70 1 0 22 30 15 620 3 0 13 0 3 392 6 4 274 1 11 144 6 0 16 chain 23622 chr18 78077248 + 64100770 64101035 L1PA3long 6157 + 5883 6148 112461 265 chain 7476 chr18 78077248 + 64129250 64129340 L1PA7 6471 + 6371 6461 174296 90 chain 15380 chr18 78077248 + 64145901 64146143 L1PREC2 3366 + 2627 2859 140264 29 7 8 47 4 0 41 2 0 54 1 0 43 1 0 5 3 0 5 chain 22165 chr18 78077248 + 64149882 64150137 L1PA3long 6157 + 5901 6157 119524 106 0 1 149 chain 21221 chr18 78077248 + 64155631 64155953 THE1B 368 - 28 368 123136 97 37 47 27 1 0 104 2 11 54 chain 29339 chr18 78077248 + 64214898 64215203 AluYa5 310 - 5 310 87350 305 chain 37744 chr18 78077248 + 64261837 64262251 L1PA3long 6157 + 5742 6156 72493 414 chain 18169 chr18 78077248 + 64265076 64265284 L1PA5 6144 + 5931 6139 132410 208 chain 23554 chr18 78077248 + 64281457 64281746 AluSg7 307 + 10 298 112828 54 2 0 67 0 1 166 chain 35151 chr18 78077248 + 64307140 64307587 L1PA7 6471 + 6017 6469 75992 121 3 4 21 1 5 301 chain 22549 chr18 78077248 + 64331110 64331447 THE1C 375 - 43 375 117810 74 1 0 15 6 0 9 20 22 27 1 2 97 0 1 71 2 0 14 chain 5660 chr18 78077248 + 64346005 64346074 MER61D 487 - 7 76 188485 69 chain 540963 chr18 78077248 + 64382312 64388342 L1PA3long 6157 + 0 6156 2667 153 2 3 620 0 128 943 0 4 270 8 0 205 1 0 1637 0 2 598 0 1 1576 1 0 16 chain 106658 chr18 78077248 + 64405399 64406592 L1PA5 6144 - 930 2128 35077 181 0 4 790 7 8 215 chain 79073 chr18 78077248 + 64406592 64407514 L1PA5 6144 + 5228 6143 44019 146 1 0 38 0 1 58 0 1 521 8 0 150 chain 22797 chr18 78077248 + 64434780 64435066 AluSx4 309 + 8 293 116589 255 6 5 25 chain 25101 chr18 78077248 + 64443903 64444256 THE1A 353 - 0 349 104286 173 12 9 61 9 8 19 1 0 50 0 1 28 chain 3116 chr18 78077248 + 64521361 64521411 L1MD1 2063 + 353 396 222613 28 7 0 15 chain 74055 chr18 78077248 + 64522029 64522964 L1PA8 5853 + 4923 5853 46483 83 0 1 11 0 1 545 1 0 44 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 17634 chr18 78077248 + 64527194 64527404 L1PA7 6471 + 6254 6464 133897 210 chain 30561 chr18 78077248 + 64527736 64528076 L1PA5 6144 - 9 349 83280 340 chain 27508 chr18 78077248 + 64533756 64534173 LTR12C 1709 + 0 459 94630 64 19 20 67 1 2 112 1 2 11 23 18 42 3 46 48 0 1 26 chain 29419 chr18 78077248 + 64542941 64543251 AluYa5 310 - 0 310 86991 310 chain 30794 chr18 78077248 + 64561161 64561587 MER4B 649 - 9 433 82877 10 1 0 68 1 0 140 1 0 12 9 10 184 chain 52092 chr18 78077248 + 64561593 64562166 SVA_B 1603 + 1024 1597 57569 573 chain 14970 chr18 78077248 + 64564873 64565171 MER1B 344 + 6 344 141410 17 48 92 15 7 5 81 4 0 48 19 21 59 chain 18091 chr18 78077248 + 64572277 64572535 THE1B-int 1605 + 0 262 132616 117 0 1 4 2 1 43 12 13 62 0 3 18 chain 31245 chr18 78077248 + 64573853 64574205 L1PA5 6144 - 0 352 82091 352 chain 82309 chr18 78077248 + 64603612 64604511 L1PA3long 6157 - 0 899 42620 899 chain 18743 chr18 78077248 + 64604520 64604724 L1PA3long 6157 + 5044 5248 130843 204 chain 74584 chr18 78077248 + 64620562 64621490 L1PA6 6164 + 5216 6162 46218 5 0 1 37 0 1 55 1 0 84 3 15 90 6 9 177 1 2 197 0 1 272 chain 7874 chr18 78077248 + 64692678 64692767 L1PA5 6144 - 9 98 171842 89 chain 4403 chr18 78077248 + 64713074 64713129 L1MC2 1988 - 554 609 201890 55 chain 10561 chr18 78077248 + 64730615 64730808 L1P4 1494 - 1174 1368 157988 90 15 16 5 1 0 35 28 29 19 chain 4602 chr18 78077248 + 64731300 64731356 L1PA17 2846 + 607 663 199595 56 chain 80790 chr18 78077248 + 64744019 64744989 LTR5_Hs 974 - 0 974 43273 63 1 0 79 1 2 47 7 7 314 0 4 458 chain 3597 chr18 78077248 + 64749051 64749092 MER66C 541 - 364 405 213715 41 chain 131070 chr18 78077248 + 64755917 64757398 L1PA5 6144 - 1812 3295 27810 326 0 1 987 0 1 168 chain 160076 chr18 78077248 + 64757398 64759199 L1PA5 6144 + 4334 6141 23327 812 0 5 659 1 2 329 chain 27345 chr18 78077248 + 64765024 64765405 THE1C 375 + 0 375 95125 108 1 2 15 3 0 47 1 2 57 4 0 119 1 0 25 chain 136361 chr18 78077248 + 64793436 64794947 SVA_D 2077 - 12 2077 26773 626 0 536 691 0 11 159 0 7 35 chain 7040 chr18 78077248 + 64830935 64831082 HSMAR2 1300 - 783 931 177181 77 49 50 21 chain 86890 chr18 78077248 + 64882109 64883282 LTR12D 1347 - 0 1347 40829 231 0 97 303 0 17 45 0 2 68 3 0 17 0 31 54 39 0 146 0 36 76 11 44 180 chain 91817 chr18 78077248 + 64894913 64896041 MER11A 1151 + 0 1144 39022 77 0 8 145 1 0 64 0 11 449 1 0 4 0 1 46 10 9 48 3 0 195 0 2 85 chain 6860 chr18 78077248 + 64916694 64916789 MER45B 1037 - 309 409 178506 71 1 6 23 chain 26096 chr18 78077248 + 64916799 64917114 L1PA7 6471 - 3 319 99638 15 0 1 300 chain 242955 chr18 78077248 + 64918845 64921601 L1PA4 6152 - 12 3899 16616 12 0 1 235 1 0 586 0 5 84 6 1132 1832 chain 25775 chr18 78077248 + 64927743 64928037 AluY 311 + 5 300 100987 127 0 1 167 chain 17992 chr18 78077248 + 64940724 64941167 L1PA15 4387 + 3936 4366 132882 51 18 17 94 7 6 11 25 24 19 51 47 12 1 0 50 6 3 26 34 33 25 2 1 11 chain 19405 chr18 78077248 + 64948590 64948804 AluYa5 310 - 0 211 128931 184 3 0 27 chain 38155 chr18 78077248 + 64960955 64961373 L1PA3long 6157 - 0 418 71904 418 chain 407382 chr18 78077248 + 65113838 65118773 L1P2 5180 - 2 5177 9867 4 1 0 38 1 0 46 1 0 129 0 2 1268 1 7 425 0 3 47 3 2 36 1 0 461 3 1 272 0 4 114 1 0 943 1 10 279 0 3 57 3 1 9 0 1 58 1 26 138 4 3 4 1 0 271 2 1 8 1 0 206 10 211 87 chain 29853 chr18 78077248 + 65122777 65123223 LTR7B 505 - 16 505 85264 35 18 17 31 0 2 42 1 0 82 0 2 26 27 20 10 0 38 69 0 10 105 chain 27693 chr18 78077248 + 65123233 65123663 MER41A 554 - 124 554 94068 86 0 1 166 0 12 12 23 7 34 46 49 63 chain 19259 chr18 78077248 + 65125447 65125702 L1PA16 3655 - 113 365 129352 172 0 1 28 0 2 8 6 0 41 chain 10299 chr18 78077248 + 65191052 65191286 L1MA8 2339 - 298 532 159133 32 1 0 13 23 44 17 3 1 6 2 0 73 19 15 10 12 0 23 chain 42654 chr18 78077248 + 65208673 65209462 L1PB1 5432 - 5 748 65836 5 2 0 18 1 0 12 1 0 22 1 0 24 2 0 12 3 2 5 2 0 10 24 15 6 1 0 16 1 0 42 23 21 39 43 36 4 1 0 19 0 3 17 14 1 34 16 13 48 2 0 5 1 3 306 2 0 5 chain 9296 chr18 78077248 + 65216632 65216740 AluSp 311 + 203 311 164077 108 chain 3711 chr18 78077248 + 65227260 65227304 MADE1 96 - 0 44 211779 44 chain 19162 chr18 78077248 + 65230145 65230364 L1PA4 6152 - 11 231 129639 102 0 1 117 chain 22968 chr18 78077248 + 65251736 65252082 THE1D 372 + 0 353 115768 51 8 0 115 22 19 6 0 2 26 3 19 115 chain 16498 chr18 78077248 + 65259856 65260042 L1PA5 6144 - 6 192 136926 186 chain 173284 chr18 78077248 + 65270870 65272837 L1HS 6032 + 1 1972 21679 69 0 1 486 0 1 339 0 1 23 0 2 565 2 1 483 chain 8942 chr18 78077248 + 65272850 65272956 L1PA4 6152 + 6041 6152 165910 91 0 5 15 chain 34643 chr18 78077248 + 65298255 65298699 LTR7 482 - 13 482 76701 172 0 31 151 20 14 101 chain 23831 chr18 78077248 + 65311924 65312352 MER6 865 + 413 839 111304 6 0 4 19 101 100 127 6 0 21 0 1 148 chain 12801 chr18 78077248 + 65314960 65315104 L1PA5 6144 - 6 151 149046 128 0 1 16 chain 209583 chr18 78077248 + 65354745 65357100 L1PA4 6152 - 11 2377 18518 1427 0 1 284 0 1 282 0 4 172 0 5 190 chain 87142 chr18 78077248 + 65378391 65379633 L1PA8A 6298 + 5017 6273 40715 67 0 1 4 1 0 226 0 1 5 5 4 164 0 6 145 0 2 19 4 0 206 20 21 258 60 78 40 9 0 9 chain 38302 chr18 78077248 + 65388324 65388764 L1PA5 6144 + 5699 6139 71704 440 chain 209229 chr18 78077248 + 65390656 65393723 L1PA7 6471 - 16 6471 18546 455 0 2 334 0 1 42 1 0 33 0 13 92 0 1 43 0 1 367 56 7 52 0 1 16 1 0 248 311 3723 222 1 0 8 3 0 5 0 3 344 5 11 26 1 2 164 1 3 236 chain 24226 chr18 78077248 + 65392421 65392704 L1P1 4361 + 2989 3272 109054 283 chain 28662 chr18 78077248 + 65407430 65407729 AluYa5 310 - 11 310 90480 299 chain 263278 chr18 78077248 + 65409963 65414310 L1PA10 4194 + 181 4161 15523 6 2 0 15 3 0 5 2 0 8 12 8 10 2 0 8 1 0 4 10 9 17 52 42 22 13 11 9 1 0 19 34 20 9 2 1 33 49 47 79 11 10 42 0 3 5 11 8 81 5 22 67 16 20 74 1 2 371 4 5 10 0 2 171 21 27 54 10 9 134 19 19 41 0 1 98 5 6 149 6 7 183 0 3 22 0 1 12 0 4 269 4 2 111 16 7 8 1 0 30 0 4 6 2 0 82 0 1 77 0 1 5 6 5 412 13 14 104 376 37 609 15 7 65 3 0 33 7 4 31 1 0 11 chain 30779 chr18 78077248 + 65413188 65413535 L1PA5 6144 + 5792 6139 82904 347 chain 21322 chr18 78077248 + 65436268 65436539 AluY 311 + 39 296 122788 92 2 0 8 0 1 149 13 0 7 chain 21951 chr18 78077248 + 65453038 65453317 L1P3 4156 - 1244 1526 120420 15 0 4 83 0 1 49 2 0 130 chain 57980 chr18 78077248 + 65454228 65454926 L1PA7 6471 + 5753 6459 53986 349 0 8 349 chain 15981 chr18 78077248 + 65472712 65472934 LTR18A 364 + 116 362 138404 72 1 0 34 9 34 106 chain 17976 chr18 78077248 + 65473587 65473817 L1PA8A 6298 + 6059 6291 132924 133 0 1 18 0 1 79 chain 24159 chr18 78077248 + 65481870 65482147 AluY 311 + 10 294 109434 121 0 2 60 0 5 96 chain 54211 chr18 78077248 + 65523008 65523674 L1PA7 6471 + 5802 6470 56219 148 0 1 157 1 0 205 0 1 42 0 1 113 chain 56544 chr18 78077248 + 65553485 65554109 L1PA4 6152 - 126 752 54829 237 0 2 387 chain 11154 chr18 78077248 + 65554109 65554230 L1PA4 6152 + 6030 6151 155615 121 chain 11179 chr18 78077248 + 65577192 65577369 MER30 238 - 0 192 155522 109 10 0 10 8 33 40 chain 17152 chr18 78077248 + 65580912 65581102 L1P1 4361 - 1191 1381 135161 190 chain 191615 chr18 78077248 + 65581109 65583212 L1PA3long 6157 + 4056 6157 19901 2096 2 0 5 chain 43593 chr18 78077248 + 65588009 65588754 L1PA14 3548 - 141 847 64695 9 1 0 5 1 0 15 4 2 32 7 3 9 1 0 111 1 0 64 62 48 104 2 0 5 2 0 9 27 24 14 2 0 13 3 0 20 3 0 219 chain 9866 chr18 78077248 + 65610672 65610781 L1PA5 6144 - 260 369 161252 109 chain 6457 chr18 78077248 + 65613132 65613241 Tigger1 2417 - 777 887 181587 44 7 0 7 7 14 30 0 1 14 chain 23235 chr18 78077248 + 65627085 65627355 AluY 311 + 16 296 114518 116 0 1 25 0 9 129 chain 10274 chr18 78077248 + 65716004 65716131 L1PA5 6144 - 8 135 159256 127 chain 20504 chr18 78077248 + 65716696 65716932 L1PA3long 6157 + 5913 6149 125617 236 chain 5135 chr18 78077248 + 65720141 65720222 MER70B 575 + 464 546 193738 14 8 9 59 chain 6808 chr18 78077248 + 65732636 65732784 L1MDa 1598 + 1106 1252 178883 50 3 2 32 41 40 22 chain 79723 chr18 78077248 + 65772478 65773445 LTR5_Hs 974 - 0 974 43723 512 0 4 268 0 1 4 1 0 135 0 3 47 chain 71136 chr18 78077248 + 65785770 65786544 L1PA3long 6157 + 5383 6157 47873 774 chain 233882 chr18 78077248 + 65804401 65807489 L1PA8 5853 - 0 3052 17095 80 8 9 4 1 0 19 7 6 35 28 26 65 2 0 18 0 2 580 0 2 11 0 1 332 0 1 65 0 1 94 47 7 158 1 0 85 8 7 406 11 17 388 0 1 116 4 1 408 5 2 23 0 1 19 0 2 60 chain 4636 chr18 78077248 + 65812819 65812880 MLT1B 390 - 46 107 199241 61 chain 17025 chr18 78077248 + 65817985 65818343 L1MA2 4263 + 3750 4105 135522 39 36 33 13 2 0 99 40 38 54 1 0 15 26 30 10 0 1 23 chain 144158 chr18 78077248 + 65834784 65836553 L1PA7 6471 - 6 1766 25450 141 0 1 163 0 1 27 5 6 133 0 1 366 13 2 675 2 0 244 chain 29229 chr18 78077248 + 65868674 65869020 L1PA5 6144 + 5793 6132 87911 188 8 1 150 chain 45499 chr18 78077248 + 65872254 65872760 L1PA2 6032 + 5528 6032 62496 499 2 0 5 chain 153999 chr18 78077248 + 65893865 65895522 L1PA2 6032 - 1 1658 24089 1657 chain 56848 chr18 78077248 + 65915173 65915906 L1PA7 6471 - 41 970 54633 89 11 28 410 6 182 104 0 3 113 chain 98749 chr18 78077248 + 65916094 65917258 L1PA5 6144 - 12 1155 37088 134 10 12 638 23 0 359 chain 62213 chr18 78077248 + 65917258 65917994 L1P1 4361 + 3579 4320 51729 34 6 13 517 6 5 157 1 0 15 chain 13827 chr18 78077248 + 65920895 65921055 L1PA6 6164 - 605 765 145150 160 chain 49779 chr18 78077248 + 65921060 65921646 L1PA6 6164 + 5570 6156 59175 586 chain 24022 chr18 78077248 + 65927019 65927312 AluSp 311 - 0 293 110204 293 chain 31608 chr18 78077248 + 65938411 65938771 L1PA4 6152 + 5790 6151 81468 107 0 1 253 chain 276634 chr18 78077248 + 65970444 65973733 L1PA6 6164 + 2850 6158 14833 338 0 2 48 0 4 183 6 5 255 2 0 18 2 0 180 0 1 389 0 3 166 0 1 845 0 6 33 1 0 102 0 6 5 0 1 651 11 12 54 chain 35116 chr18 78077248 + 65986312 65986777 L1PA8 5853 + 5395 5853 76031 169 1 0 44 2 0 74 21 19 39 2 1 19 1 0 93 chain 4197 chr18 78077248 + 66007393 66007443 L1PA16 3655 + 3490 3540 204590 50 chain 250309 chr18 78077248 + 66015626 66019123 L1PB1 5432 + 1942 5411 16229 46 0 1 71 8 5 363 0 11 54 6 0 53 0 4 270 3 0 373 3 8 139 0 1 110 0 5 276 1 0 254 2 0 39 1 3 48 0 1 227 1 2 320 3 0 84 1 3 98 1 0 4 7 3 285 1 2 9 5 0 24 33 23 7 2 0 51 19 17 45 39 27 19 7 4 12 6 4 23 1 0 13 11 10 11 1 0 7 chain 7085 chr18 78077248 + 66064535 66064622 MLT1B 390 - 21 108 176857 87 chain 45149 chr18 78077248 + 66088854 66089397 L1PA8 5853 - 1449 1992 62868 543 chain 107426 chr18 78077248 + 66089397 66090830 L1PA8 5853 + 4419 5853 34858 171 7 8 70 0 7 7 7 0 327 2 0 65 10 9 87 7 9 101 0 1 25 0 6 252 1 0 46 2 0 56 40 38 36 2 1 4 0 1 14 1 0 93 chain 44926 chr18 78077248 + 66109717 66110206 L1PA3long 6157 - 0 489 63142 489 chain 143141 chr18 78077248 + 66110206 66111782 L1PA3long 6157 + 4091 5668 25631 1393 0 1 183 chain 6218 chr18 78077248 + 66146497 66146585 MER30B 195 + 102 181 183427 12 1 0 8 8 0 59 chain 5040 chr18 78077248 + 66150534 66150591 L1MC1 2226 + 1991 2048 194726 57 chain 22516 chr18 78077248 + 66154512 66154810 AluY 311 + 10 304 117959 65 5 0 57 0 1 10 3 0 6 1 4 151 chain 5921 chr18 78077248 + 66192896 66193085 L1MA8 2339 - 82 239 185977 44 55 56 38 33 0 19 chain 8570 chr18 78077248 + 66211394 66211496 L1PA8 5853 + 5748 5849 167906 12 1 0 89 chain 37045 chr18 78077248 + 66239265 66239758 L1PA10 4194 + 3652 4143 73467 145 13 12 4 0 1 290 2 3 9 3 0 27 chain 9710 chr18 78077248 + 66269470 66269575 L1PA2 6032 - 5 110 162031 105 chain 27604 chr18 78077248 + 66275472 66275780 AluYg6 310 - 8 310 94336 10 5 0 174 1 0 118 chain 54474 chr18 78077248 + 66286771 66287560 L1PA10 4194 + 3387 4142 56047 143 0 1 77 0 5 232 0 2 54 5 8 157 47 10 6 5 0 22 2 3 4 1 0 5 3 0 26 chain 369234 chr18 78077248 + 66300311 66305569 L1PB1 5432 - 151 5394 11115 44 1 0 12 8 7 50 2 0 9 27 21 24 1 0 11 1 0 39 18 13 32 7 9 190 0 4 67 49 0 42 0 2 69 26 27 29 0 1 66 10 1 65 1 2 443 10 11 35 9 0 162 0 26 30 15 0 127 6 11 317 5 6 11 0 1 257 2 1 113 0 3 66 12 12 319 1 2 258 0 1 31 0 3 8 0 1 5 0 9 51 0 2 32 0 1 14 7 10 241 0 3 77 4 5 336 10 8 103 4 5 20 6 6 28 5 4 58 3 4 189 1 0 5 9 10 141 8 21 49 0 4 200 5 1 4 0 1 139 27 24 233 2 3 4 0 1 101 chain 25782 chr18 78077248 + 66317822 66318146 MLT2A1 477 - 155 477 100955 117 0 1 31 8 5 168 chain 16521 chr18 78077248 + 66319550 66319735 L1PA4 6152 - 297 485 136854 113 0 1 56 0 2 16 chain 4921 chr18 78077248 + 66319746 66319806 L1PA4 6152 + 6087 6152 196036 54 0 5 6 chain 31242 chr18 78077248 + 66334996 66335521 L1PA14 3548 + 2953 3456 82093 47 9 5 105 2 0 4 2 0 17 2 0 6 1 0 25 4 7 50 1 0 50 3 0 63 17 12 35 4 2 12 1 0 5 22 20 38 chain 14757 chr18 78077248 + 66337483 66337856 MSTA 426 - 0 410 142079 54 61 75 34 53 5 11 1 48 51 32 56 76 chain 8668 chr18 78077248 + 66350983 66351293 MER44A 345 + 0 333 167377 20 104 127 30 5 5 57 57 57 37 chain 25774 chr18 78077248 + 66365971 66366278 AluYk4 311 + 0 299 100996 126 6 0 168 2 0 5 chain 16316 chr18 78077248 + 66403886 66404108 THE1A 353 - 131 353 137448 20 1 2 92 1 0 108 chain 82199 chr18 78077248 + 66416135 66417041 L1PA5 6144 - 1122 2028 42676 906 chain 98370 chr18 78077248 + 66417041 66418198 L1PA5 6144 + 5007 6142 37203 287 1 0 91 12 1 290 6 0 149 0 1 65 1 0 244 4 0 7 chain 7444 chr18 78077248 + 66422101 66422269 MLT1A0 366 + 172 347 174488 16 69 76 83 chain 6507 chr18 78077248 + 66436605 66436683 MLT1A 405 - 293 371 181184 78 chain 551410 chr18 78077248 + 66452071 66458090 L1PA2 6032 - 2 6030 1264 15 0 6 1399 1 3 4263 0 1 87 1 0 183 0 1 70 chain 26713 chr18 78077248 + 66475705 66476013 AluYk4 311 - 3 310 97284 176 1 0 131 chain 44638 chr18 78077248 + 66477933 66478501 L1PA7 6471 - 1 565 63440 13 1 4 21 0 1 110 2 0 4 1 0 6 1 4 10 8 0 391 chain 11701 chr18 78077248 + 66489890 66490038 L1PA16 3655 - 80 228 153466 148 chain 16326 chr18 78077248 + 66491633 66491845 L1P4 1494 - 1083 1298 137416 77 6 9 129 chain 9916 chr18 78077248 + 66526170 66526277 U6 107 + 0 107 160986 107 chain 130863 chr18 78077248 + 66526277 66527702 L1PA2 6032 + 4607 6032 27895 1425 chain 20882 chr18 78077248 + 66537296 66537594 L1PA8 5853 + 5558 5853 124345 4 1 0 47 3 1 71 1 0 7 1 0 9 3 0 26 12 18 19 1 0 93 chain 135261 chr18 78077248 + 66546078 66547796 LTR12C 1709 - 0 1709 26964 92 27 0 116 102 0 273 7 11 99 4 2 4 1 0 264 0 118 312 2 3 415 chain 37548 chr18 78077248 + 66604837 66605304 L1PA7 6471 - 2 459 72758 11 2 0 144 9 0 29 0 1 272 chain 79031 chr18 78077248 + 66609505 66610470 LTR5_Hs 974 - 0 974 44041 63 1 0 15 0 2 71 5 6 306 6 5 44 0 4 441 0 4 13 chain 42836 chr18 78077248 + 66610913 66611561 LTR6A 649 - 0 649 65608 22 0 1 37 1 0 48 1 2 98 0 1 54 0 1 100 1 2 177 2 1 15 65 63 27 chain 31212 chr18 78077248 + 66616125 66616523 MLT2A1 477 - 82 477 82139 71 1 0 121 0 1 32 4 1 169 chain 14746 chr18 78077248 + 66644515 66644695 L1PA7 6471 - 12 192 142112 180 chain 13534 chr18 78077248 + 66649029 66649194 L1PA6 6164 - 199 364 146231 165 chain 14403 chr18 78077248 + 66661838 66662054 THE1D 372 + 132 360 143199 33 22 35 25 1 0 135 chain 32438 chr18 78077248 + 66665685 66666196 MLT2A2 560 - 8 560 80134 22 3 1 12 19 33 71 0 11 63 1 0 30 8 0 7 9 37 85 13 12 168 chain 7924 chr18 78077248 + 66708986 66709086 L1PREC2 3366 - 2114 2226 171494 15 0 12 85 chain 76351 chr18 78077248 + 66710088 66711057 LTR5_Hs 974 - 0 974 45289 103 2 0 37 8 15 67 8 0 7 0 8 81 1 0 188 0 1 178 0 1 121 1 0 167 chain 29351 chr18 78077248 + 66716279 66716618 L1PA7 6471 - 1 340 87284 339 chain 4536 chr18 78077248 + 66746452 66746505 U2 167 - 114 167 200387 53 chain 2882 chr18 78077248 + 66803281 66803394 L1MA3 4352 - 24 128 227338 14 11 10 13 36 32 23 4 0 12 chain 20411 chr18 78077248 + 66857076 66857450 THE1C 375 + 0 373 125861 33 10 11 18 23 24 52 1 5 32 0 2 8 41 33 132 1 0 23 chain 83672 chr18 78077248 + 66864179 66865206 L1PA7 6471 - 115 1151 42045 219 0 1 385 0 3 42 5 8 69 9 11 298 chain 7566 chr18 78077248 + 66878055 66878150 L1PA7 6471 + 6372 6467 173757 95 chain 7092 chr18 78077248 + 66913526 66913613 L1MC1 2226 - 387 474 176815 87 chain 335211 chr18 78077248 + 66918514 66922240 L1PA3long 6157 - 0 3734 12020 414 0 1 172 0 1 262 0 1 671 1 0 277 0 4 407 0 1 212 0 1 373 0 1 669 1 0 267 chain 102404 chr18 78077248 + 66922240 66923394 L1HS 6032 + 1145 2293 36062 347 6 0 801 chain 9709 chr18 78077248 + 66966903 66967030 L1MA6 2487 - 666 793 162041 92 1 0 4 0 1 30 chain 27666 chr18 78077248 + 66974039 66974426 L1PA8 5853 + 5454 5853 94163 110 1 0 10 0 19 14 5 3 70 1 0 8 5 4 48 2 1 19 1 0 93 chain 6384 chr18 78077248 + 66984959 66985087 L1MA3 4352 - 59 179 182148 5 1 0 5 1 0 22 4 1 25 4 0 15 6 7 40 chain 11468 chr18 78077248 + 66995755 66996021 L1PA13 3608 + 92 337 154441 17 6 4 23 2 0 3 1 0 24 1 0 14 3 0 15 0 3 6 31 17 45 19 20 8 2 0 46 chain 25468 chr18 78077248 + 67008835 67009123 L1PA4 6152 + 5863 6151 102359 288 chain 69541 chr18 78077248 + 67015222 67016078 L1PA7 6471 + 5621 6464 48594 82 0 1 215 0 1 160 16 4 375 3 0 5 chain 117828 chr18 78077248 + 67027192 67029015 THE1B-int 1605 + 0 1601 31855 15 0 2 305 0 5 103 1 26 23 0 1 488 1 0 99 5 6 98 11 14 30 6 7 4 1 0 67 1 0 9 258 0 283 2 0 8 0 3 5 chain 18933 chr18 78077248 + 67048605 67048828 L1PA7 6471 + 5975 6199 130280 16 0 1 207 chain 128452 chr18 78077248 + 67103410 67104969 L1PA7 6471 - 1 1563 28465 11 0 4 193 0 2 57 0 7 494 0 1 23 0 3 54 1 0 425 1 0 107 13 1 180 chain 130857 chr18 78077248 + 67113309 67114767 L1PA5 6144 - 15 1476 27899 919 0 3 539 chain 511003 chr18 78077248 + 67116795 67122308 L1PA2 6032 + 513 6032 6069 1685 1 0 1192 0 2 263 0 1 578 0 4 1794 chain 49638 chr18 78077248 + 67132542 67133088 L1PA3long 6157 - 0 544 59285 5 2 0 539 chain 97798 chr18 78077248 + 67148463 67149559 L1PA5 6144 - 2 1099 37337 273 0 1 823 chain 50894 chr18 78077248 + 67197886 67198459 L1P1 4361 - 1604 2185 58373 345 0 8 228 chain 23387 chr18 78077248 + 67213238 67213527 AluSp 311 + 7 296 113718 289 chain 24837 chr18 78077248 + 67216047 67216357 AluYf4 310 + 0 299 105686 132 2 0 128 9 7 26 7 0 6 chain 18226 chr18 78077248 + 67229551 67229760 L1PA4 6152 - 1282 1492 132267 17 0 1 192 chain 114585 chr18 78077248 + 67229760 67231039 L1PA4 6152 + 4864 6143 32926 1279 chain 35037 chr18 78077248 + 67235857 67236354 MER1A 529 + 41 521 76139 39 20 17 13 4 0 347 12 2 62 chain 6389 chr18 78077248 + 67245228 67245307 L1PA8 5853 + 5774 5853 182104 79 chain 17542 chr18 78077248 + 67285695 67286063 THE1B 368 - 0 368 134151 49 14 13 57 64 72 42 40 33 102 chain 11064 chr18 78077248 + 67342788 67342912 L1PA4 6152 + 6028 6152 155949 124 chain 47772 chr18 78077248 + 67373763 67374299 L1PA3long 6157 - 0 527 60642 140 8 0 119 1 0 268 chain 47913 chr18 78077248 + 67415244 67415886 L1P3 4156 + 2565 3234 60547 64 0 3 152 0 1 125 0 4 34 18 31 37 0 2 75 0 4 137 chain 7216 chr18 78077248 + 67421803 67422128 MLT1B 390 - 50 381 175961 26 0 2 18 18 17 46 185 191 13 1 0 18 chain 19560 chr18 78077248 + 67433671 67433989 Tigger2a 444 - 67 412 128491 16 0 1 54 30 32 29 3 0 74 13 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78077248 + 67595805 67596000 Tigger4a 237 - 0 200 164299 50 10 0 11 53 68 71 chain 39666 chr18 78077248 + 67598179 67598628 L1PA4 6152 + 5701 6151 69800 183 8 9 258 chain 22234 chr18 78077248 + 67607172 67607531 THE1C 375 + 0 360 119192 87 7 8 84 37 35 10 6 9 117 1 0 10 chain 110417 chr18 78077248 + 67607562 67609071 THE1C-int 1605 + 15 1600 34092 95 0 54 165 0 6 110 0 7 21 2 1 42 0 2 134 3 11 15 25 26 27 5 0 19 0 9 181 0 1 145 12 8 79 1 0 109 1 0 211 1 0 8 2 3 96 chain 20905 chr18 78077248 + 67612954 67613267 THE1B 368 - 0 313 124259 18 3 0 5 15 18 34 1 0 57 0 4 40 2 0 20 1 0 117 chain 24283 chr18 78077248 + 67622821 67623120 AluY 311 + 0 304 108748 33 6 10 89 0 1 171 chain 267674 chr18 78077248 + 67630829 67633842 L1PA5 6144 + 3135 6139 15311 374 1 0 810 0 1 892 1 0 8 0 1 73 2 1 693 0 1 131 9 0 19 chain 37077 chr18 78077248 + 67635040 67635532 MER1A 529 - 1 497 73418 63 7 9 230 6 8 186 chain 19695 chr18 78077248 + 67640061 67640299 MLT2A1 477 - 234 477 128122 70 1 5 25 0 1 142 chain 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30632 chr18 78077248 + 67808652 67809014 L1PA6 6164 + 5798 6161 83152 257 0 3 96 2 0 7 chain 88184 chr18 78077248 + 67822951 67824005 MER11C 1089 + 0 1063 40306 249 0 1 67 0 4 369 0 4 43 0 1 31 6 5 289 chain 8854 chr18 78077248 + 67853780 67853977 L1PA15 4387 + 4185 4366 166358 23 4 0 7 5 4 48 17 14 33 3 1 11 8 3 27 1 0 10 chain 28713 chr18 78077248 + 67868556 67868870 AluYa5 310 + 0 308 90279 93 6 0 215 chain 12927 chr18 78077248 + 67873839 67874016 MER2 342 - 26 204 148517 18 3 4 156 chain 7496 chr18 78077248 + 67879988 67880083 L1MB5 1630 + 680 775 174174 95 chain 20193 chr18 78077248 + 67885331 67885678 THE1B 368 - 2 361 126551 113 45 55 25 5 4 48 2 1 5 0 1 71 1 6 24 2 0 6 chain 307792 chr18 78077248 + 67903661 67907523 L1P3 4156 + 3 4139 13098 187 0 1 37 25 24 70 0 14 69 13 0 452 0 1 348 1 5 141 2 1 742 5 6 375 0 1 159 1 2 60 2 1 184 0 4 607 2 0 187 2 14 48 33 289 74 3 1 9 1 0 23 chain 53256 chr18 78077248 + 67909628 67910252 L1PA7 6471 + 5844 6469 56854 607 0 1 17 chain 24177 chr18 78077248 + 67929658 67930019 THE1B 368 + 1 368 109334 106 0 1 61 1 0 21 7 10 14 8 12 4 1 0 9 2 1 28 1 2 98 chain 6142 chr18 78077248 + 67936485 67936657 MLT2B4 540 - 8 157 184064 28 85 63 51 1 0 7 chain 23402 chr18 78077248 + 67937543 67937908 THE1B 368 - 0 368 113636 107 1 0 16 52 57 12 0 1 6 2 0 169 chain 28713 chr18 78077248 + 67949610 67949925 AluY 311 + 0 311 90278 75 5 0 57 0 1 178 chain 12668 chr18 78077248 + 67984313 67984654 L1PB1 5432 - 10 318 149576 21 1 0 9 1 2 20 1 0 24 2 0 11 12 9 18 29 18 9 1 0 44 1 0 16 2 1 23 4 0 16 30 23 11 2 1 12 8 7 13 chain 544825 chr18 78077248 + 68010177 68016317 L1PA5 6144 - 2 6139 2095 7 4 0 138 0 1 1371 2 0 277 0 4 1186 2 0 401 0 1 69 0 1 491 0 2 193 0 1 50 10 0 326 0 2 141 0 2 450 0 1 1022 chain 3761 chr18 78077248 + 68027640 68027685 MER72 723 - 0 45 210951 45 chain 53935 chr18 78077248 + 68034327 68035390 MER4E1 777 + 0 777 56412 123 1 0 50 0 1 4 1 0 202 0 2 51 295 5 46 0 2 30 3 0 26 19 23 19 13 0 8 13 26 159 chain 27449 chr18 78077248 + 68039171 68039558 MER57B1 401 - 14 401 94822 76 1 0 20 8 11 179 18 16 85 chain 25323 chr18 78077248 + 68056130 68056426 AluSp 311 - 16 311 103106 151 1 0 144 chain 4099 chr18 78077248 + 68056429 68056514 L1PB1 5432 - 151 236 205959 44 23 23 18 chain 17631 chr18 78077248 + 68091643 68092023 MSTA 426 + 0 414 133904 66 1 0 4 5 6 13 17 39 5 1 0 10 25 25 37 2 0 10 26 29 53 25 37 80 chain 7836 chr18 78077248 + 68093678 68093772 MSTA 426 - 317 419 172094 83 0 8 11 chain 29226 chr18 78077248 + 68104254 68104569 AluYb8 318 + 0 312 87929 299 3 0 13 chain 4413 chr18 78077248 + 68109600 68109654 MER50B 698 + 489 543 201764 54 chain 46037 chr18 78077248 + 68112819 68113365 MER41A 554 + 0 548 62008 362 0 1 67 0 1 117 chain 24486 chr18 78077248 + 68123731 68124100 MER51B 395 + 0 387 107626 19 28 47 176 10 9 136 chain 91480 chr18 78077248 + 68146360 68147383 LTR5A 1029 + 0 1029 39144 17 0 4 126 1 0 636 0 3 243 chain 176624 chr18 78077248 + 68148657 68151128 L1PREC2 3366 - 628 3230 21292 237 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25884 chr18 78077248 + 68316709 68316991 L1PA4 6152 + 5700 5982 100507 282 chain 40646 chr18 78077248 + 68335067 68335521 L1PA3long 6157 - 0 455 68375 374 0 1 80 chain 45777 chr18 78077248 + 68335521 68336021 L1PA3long 6157 + 5183 5683 62250 500 chain 2577 chr18 78077248 + 68336994 68337079 MER52D 1964 + 1175 1237 231948 13 14 0 19 23 14 16 chain 140393 chr18 78077248 + 68352433 68353930 L1HS 6032 - 0 1497 26088 1497 chain 3166 chr18 78077248 + 68355625 68355777 MLT1A 405 + 218 368 221617 18 24 0 7 17 42 12 44 41 30 chain 24092 chr18 78077248 + 68364490 68365217 L1PA16 3655 - 571 966 109788 56 0 1 106 1 0 21 1 0 8 15 17 43 24 14 15 8 12 23 327 0 79 chain 17402 chr18 78077248 + 68365522 68365774 Tigger3a 397 - 31 366 134504 12 2 32 178 0 52 33 9 10 18 chain 22878 chr18 78077248 + 68370638 68370918 L1PA5 6144 - 4 287 116194 12 3 0 91 0 6 59 2 0 6 0 2 107 chain 19950 chr18 78077248 + 68378743 68378992 L1PA7 6471 - 6 253 127301 67 1 0 83 8 7 90 chain 525768 chr18 78077248 + 68381559 68387682 L1PA5 6144 + 3 6144 4607 117 0 14 106 17 10 562 0 3 184 0 1 258 0 1 575 0 5 96 1 0 1242 1 0 331 19 16 1480 0 1 286 0 4 590 1 0 87 21 26 6 2 0 128 2 1 11 chain 529647 chr18 78077248 + 68403112 68409212 L1PA5 6144 + 0 6142 4229 95 1 2 96 1 19 1674 0 1 44 0 1 683 3 4 538 0 2 350 1 0 175 0 2 970 1 2 635 1 0 24 2 3 528 4 18 130 6 8 138 chain 568864 chr18 78077248 + 68413785 68419817 L1HS 6032 - 0 6032 4 6032 chain 3429 chr18 78077248 + 68429852 68429903 MADE1 96 + 29 96 216589 13 1 17 37 chain 51966 chr18 78077248 + 68432824 68433506 L1PA10 4194 - 1119 1797 57639 7 1 0 320 0 3 62 27 20 39 0 1 226 chain 78203 chr18 78077248 + 68433519 68434534 L1PA10 4194 + 3068 4054 44417 55 10 1 266 0 1 87 25 0 336 0 4 236 chain 26221 chr18 78077248 + 68456907 68457262 THE1B-int 1605 - 5 596 99123 48 0 45 56 3 196 212 5 3 31 chain 8008 chr18 78077248 + 68457276 68457413 THE1B 368 - 227 368 171002 68 20 26 34 2 0 13 chain 469568 chr18 78077248 + 68462245 68467900 L1PA5 6144 + 766 6142 8046 382 0 3 84 1 0 109 0 1 616 4 0 1013 1 2 200 1 0 325 0 1 432 314 13 373 0 1 22 0 8 540 1 5 108 0 1 270 1 5 11 0 4 847 chain 26315 chr18 78077248 + 68465422 68465727 L1PA5 6144 + 5825 6138 98763 169 0 8 136 chain 18339 chr18 78077248 + 68472923 68473266 THE1B 368 + 0 347 131960 108 5 6 55 2 0 6 48 55 10 1 0 66 24 23 18 chain 30121 chr18 78077248 + 68483990 68484320 L1PA2 6032 + 5702 6032 84422 330 chain 7394 chr18 78077248 + 68488832 68488924 MLT1C 463 - 298 391 174808 39 0 1 53 chain 44860 chr18 78077248 + 68507038 68507592 MER41A 554 - 0 554 63221 554 chain 324995 chr18 78077248 + 68521480 68525073 L1PA3long 6157 - 1 3597 12391 331 2 1 780 0 6 2464 2 0 14 chain 39620 chr18 78077248 + 68548953 68549481 MLT2A2 560 + 2 560 69865 308 1 19 71 4 15 27 2 1 47 0 1 31 0 1 37 chain 16172 chr18 78077248 + 68556240 68556435 THE1D-int 1627 + 1424 1619 137835 195 chain 3986 chr18 78077248 + 68560359 68560404 MADE1 96 - 2 47 207599 45 chain 478264 chr18 78077248 + 68578356 68584425 L1PA7 6471 - 8 6465 7791 756 16 20 58 0 6 130 7 6 189 2 1 523 0 1 313 1 0 4 0 1 37 1 0 109 7 4 23 2 1 115 0 335 191 1 6 11 1 2 5 1 0 37 0 5 77 2 0 413 0 1 464 1 0 121 0 1 33 3 4 136 1 0 273 5 7 467 0 15 277 8 7 10 0 1 364 14 14 110 0 1 255 5 0 6 5 11 261 26 47 192 chain 120330 chr18 78077248 + 68591276 68592912 L1PA10 4194 + 2520 4150 30930 29 0 1 7 1 0 53 14 12 7 0 1 18 0 1 7 2 3 297 1 0 100 5 6 383 4 6 237 1 4 337 25 16 37 12 11 11 0 1 11 4 1 33 chain 12759 chr18 78077248 + 68603739 68603928 THE1D 372 + 194 372 149215 81 23 8 16 0 4 69 chain 36569 chr18 78077248 + 68625311 68625780 L1PA8 5853 - 0 459 74142 93 1 0 19 2 1 47 3 0 14 1 0 62 9 7 46 1 0 49 1 0 121 chain 7895 chr18 78077248 + 68648123 68648220 MLT1A 405 - 233 330 171685 97 chain 7385 chr18 78077248 + 68652576 68652679 THE1D 372 + 268 372 174876 37 7 8 59 chain 49709 chr18 78077248 + 68656467 68657018 L1PA3long 6157 - 940 1491 59229 551 chain 86339 chr18 78077248 + 68657018 68657968 L1PA3long 6157 + 5206 6157 41027 791 0 1 159 chain 59702 chr18 78077248 + 68671729 68672488 MER4E1 777 - 7 777 52992 219 1 9 29 0 1 48 0 1 109 14 14 320 1 2 18 chain 10797 chr18 78077248 + 68679738 68679882 L1PA5 6144 - 6 186 157001 42 1 0 9 0 19 71 0 1 6 1 18 14 chain 77645 chr18 78077248 + 68696458 68697545 LTR12C 1709 - 0 1321 44675 84 5 4 80 0 102 45 0 1 4 1 0 161 11 4 17 24 0 74 0 47 249 1 0 144 41 0 71 0 162 52 3 0 20 chain 131512 chr18 78077248 + 68697570 68699139 LTR12C 1709 - 0 1709 27745 481 0 4 107 2 0 6 1 0 184 11 151 417 1 0 45 1 0 4 0 1 309 chain 28436 chr18 78077248 + 68724372 68724671 AluYf4 310 + 0 299 91439 299 chain 493549 chr18 78077248 + 68756174 68765811 L1PA7 6471 - 38 6466 7198 32 2 0 56 2 1 23 0 1 276 0 1 179 7 23 212 5 6 478 0 1 193 1 0 330 2 1 572 1 2 43 1 0 60 0 1 449 54 18 39 0 1 117 18 0 143 11 12 59 0 2 461 3245 64 36 17 9 280 10 8 176 0 1 31 1 0 6 0 6 221 0 1 179 7 8 466 11 13 342 0 1 247 2 10 122 4 1 10 5 4 26 6 7 181 1 0 4 0 1 175 chain 289960 chr18 78077248 + 68760063 68763226 L1PA3long 6157 - 0 3163 14021 3163 chain 20935 chr18 78077248 + 68775466 68775750 L1PA8 5853 - 0 269 124164 93 1 0 16 1 0 39 5 6 8 2 0 81 12 0 26 chain 118095 chr18 78077248 + 68790485 68791784 L1PA3long 6157 - 8 1308 31773 127 8 9 1164 chain 14794 chr18 78077248 + 68792640 68792817 L1PA6 6164 + 5979 6156 141948 177 chain 21589 chr18 78077248 + 68824241 68824488 L1PA5 6144 - 12 259 121811 247 chain 8051 chr18 78077248 + 68879325 68879438 LTR12C 1709 - 879 1033 170751 80 1 42 32 chain 28975 chr18 78077248 + 68894150 68894458 AluYa5 310 - 2 310 89113 308 chain 35778 chr18 78077248 + 68933151 68933618 MLT2A2 560 - 80 560 75166 67 0 11 239 8 0 7 0 8 129 0 2 17 chain 26770 chr18 78077248 + 68950577 68950947 LTR7 482 - 6 482 97085 170 0 1 44 5 37 73 0 50 57 8 31 13 chain 44147 chr18 78077248 + 68952934 68953480 MER41A 554 - 0 544 64014 63 1 0 286 2 1 194 chain 54512 chr18 78077248 + 68961445 68962146 L1PA7 6471 - 2 705 56021 11 0 2 128 33 33 7 4 0 172 0 1 23 0 3 323 chain 115687 chr18 78077248 + 68978796 68980056 L1PA3long 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69764880 L1PB1 5432 - 12 265 142810 16 1 0 13 1 0 21 1 0 24 24 19 30 13 1 59 1 0 16 5 4 50 chain 16777 chr18 78077248 + 69765464 69765701 THE1A 353 - 95 332 136176 15 2 5 5 3 0 123 5 4 21 0 1 63 chain 8454 chr18 78077248 + 69788645 69788781 MER2 342 - 116 251 168539 104 19 18 13 chain 66499 chr18 78077248 + 69791464 69792257 L1PA6 6164 + 5366 6156 49868 32 3 0 758 chain 177216 chr18 78077248 + 69800821 69802795 L1PA3long 6157 - 0 1984 21230 271 0 1 484 0 1 86 0 4 956 0 4 177 chain 64547 chr18 78077248 + 69802795 69803503 L1PA3long 6157 + 3459 4167 50732 708 chain 15361 chr18 78077248 + 69825860 69826069 L1MA5 2750 + 2192 2399 140311 91 11 9 107 chain 74902 chr18 78077248 + 69858850 69859682 L1PA3long 6157 - 844 1676 46061 94 1 2 582 1 0 154 chain 74533 chr18 78077248 + 69859682 69860515 L1PA3long 6157 + 5308 6157 46248 22 0 17 545 1 0 265 chain 9675 chr18 78077248 + 69876833 69877057 LTR12C 1709 + 932 1203 162223 49 78 0 51 4 129 42 chain 29248 chr18 78077248 + 69896771 69897075 AluYa5 310 - 6 310 87802 304 chain 5333 chr18 78077248 + 69929109 69929294 MLT2D 439 - 248 439 191703 47 106 112 32 chain 84958 chr18 78077248 + 69936452 69937417 L1PA4 6152 + 5147 6119 41531 859 0 7 106 chain 25671 chr18 78077248 + 69941014 69941344 THE1A 353 + 24 353 101402 86 1 0 92 2 1 79 0 1 70 chain 227760 chr18 78077248 + 69943554 69947483 L1PA7 6471 + 3629 6468 17437 747 11 11 212 7 9 66 0 2 271 0 1 349 0 1 4 1098 4 315 1 0 376 2 0 461 0 1 9 chain 35725 chr18 78077248 + 69945226 69945621 L1PA5 6144 - 687 1082 75234 395 chain 60496 chr18 78077248 + 69945621 69946303 L1PA5 6144 + 5461 6143 52580 682 chain 4545 chr18 78077248 + 69950595 69950651 MLT2B3 573 + 45 101 200293 56 chain 21363 chr18 78077248 + 69950771 69951121 THE1B 368 - 0 367 122642 72 33 41 56 4 0 15 13 12 105 1 0 12 0 15 39 chain 28144 chr18 78077248 + 69977645 69977942 AluYa5 310 - 13 310 92482 297 chain 10008 chr18 78077248 + 70055201 70055319 L1HS 6032 + 5911 6031 160543 5 0 2 113 chain 20821 chr18 78077248 + 70065936 70066169 L1PA5 6144 - 281 515 124540 50 0 1 183 chain 24853 chr18 78077248 + 70066169 70066458 L1PA5 6144 + 5853 6142 105610 289 chain 29179 chr18 78077248 + 70072983 70073292 AluYa5 310 - 1 310 88151 309 chain 26191 chr18 78077248 + 70087925 70088285 THE1C 375 + 0 364 99233 194 17 20 98 0 2 36 1 0 14 chain 24259 chr18 78077248 + 70110565 70110918 L1PA8 5853 + 5502 5853 108897 61 3 2 44 2 3 66 2 1 11 1 0 50 2 1 19 1 0 6 0 2 85 chain 28880 chr18 78077248 + 70126676 70127015 AluYb8 318 + 0 314 89540 132 2 0 129 23 0 53 chain 25998 chr18 78077248 + 70146922 70147290 THE1B 368 + 0 368 100025 12 3 1 27 0 5 127 3 2 20 6 5 95 1 0 74 chain 32434 chr18 78077248 + 70177924 70178364 HERVL-int 5654 + 4777 5223 80146 39 24 29 94 0 1 283 chain 38582 chr18 78077248 + 70261072 70261527 L1PA7 6471 + 6014 6470 71318 225 0 1 230 chain 3874 chr18 78077248 + 70351338 70351383 MLT2B4 540 + 491 536 209252 45 chain 168556 chr18 78077248 + 70360377 70363073 MER61-int 3695 + 1 2340 22216 27 7 0 18 1 0 53 1 2 48 0 1 42 38 0 80 1 0 54 13 6 41 326 0 39 15 1 212 0 2 15 2 1 154 0 4 41 23 21 140 5 16 203 0 3 72 0 13 114 0 1 139 0 4 128 6 5 79 0 1 65 2 0 285 0 1 101 0 1 106 chain 7736 chr18 78077248 + 70379515 70379616 THE1B-int 1605 - 1485 1588 172683 83 1 3 17 chain 24283 chr18 78077248 + 70385788 70386125 MER4E1 777 + 421 770 108754 121 1 9 164 23 27 28 chain 51712 chr18 78077248 + 70389712 70390297 L1PA4 6152 - 9 596 57809 310 0 1 146 0 1 129 chain 9502 chr18 78077248 + 70452786 70452888 L1PA4 6152 - 11 113 163066 102 chain 27421 chr18 78077248 + 70547598 70547898 L1PA2 6032 - 2 303 94902 148 0 1 152 chain 25343 chr18 78077248 + 70550806 70551149 THE1B 368 - 2 368 103000 167 4 1 25 0 11 95 8 23 44 chain 15049 chr18 78077248 + 70561839 70562012 L1PA5 6144 + 5959 6132 141177 173 chain 58927 chr18 78077248 + 70588223 70589064 L1PA8 5853 + 5011 5853 53440 346 5 6 195 15 14 38 2 0 51 24 35 6 6 0 38 2 1 18 2 1 93 chain 26464 chr18 78077248 + 70614213 70614535 L1PA7 6471 + 6150 6470 98190 147 3 1 172 chain 563403 chr18 78077248 + 70633761 70639791 L1HS 6032 - 1 6032 258 4958 0 1 1072 chain 5505 chr18 78077248 + 70642079 70642197 L1PB1 5432 - 5 111 189988 4 1 0 6 1 0 13 1 0 13 1 0 11 5 3 7 1 0 24 2 0 15 1 0 4 2 0 6 chain 31593 chr18 78077248 + 70643205 70643554 L1P1 4361 - 33 380 81504 23 1 0 155 1 0 169 chain 64364 chr18 78077248 + 70643570 70644311 L1PA2 6032 + 5313 6030 50856 382 0 3 224 27 0 108 chain 13602 chr18 78077248 + 70662152 70662306 L1PA4 6152 - 289 441 145970 51 2 0 101 chain 9989 chr18 78077248 + 70662306 70662419 L1PA4 6152 + 6033 6146 160633 113 chain 10243 chr18 78077248 + 70680716 70680842 L1PA5 6144 + 6013 6140 159403 25 0 1 101 chain 499473 chr18 78077248 + 70683715 70689992 L1PA5 6144 + 5 6138 6864 115 1 35 223 7 1 113 2 0 27 0 8 248 2 1 348 24 56 1576 0 1 94 1 0 504 0 2 163 3 4 345 1 14 1253 0 20 138 1 0 79 0 2 7 8 55 331 307 0 84 0 1 42 0 1 105 1 13 124 chain 10076 chr18 78077248 + 70692101 70692259 THE1D 372 + 224 372 160195 80 23 13 55 chain 19310 chr18 78077248 + 70702298 70702524 L1PA4 6152 + 5876 6105 129215 160 1 0 11 1 5 53 chain 2890 chr18 78077248 + 70721397 70721432 MER58B 340 - 70 105 227202 35 chain 29449 chr18 78077248 + 70722124 70722436 AluYb8 318 - 7 318 86856 185 1 0 126 chain 86111 chr18 78077248 + 70738445 70739537 MER11A 1151 + 34 1150 41115 74 0 2 66 8 0 23 2 0 25 5 4 64 8 4 377 6 9 126 0 1 17 0 33 291 chain 33604 chr18 78077248 + 70752077 70752452 L1PA4 6152 + 5768 6143 78232 375 chain 23456 chr18 78077248 + 70761520 70761794 AluSp 311 + 9 284 113342 129 3 4 142 chain 19280 chr18 78077248 + 70788500 70788942 MLT2A1 477 - 1 303 129288 36 197 55 181 0 1 23 0 1 5 chain 14611 chr18 78077248 + 70810572 70810734 L1PA4 6152 + 5988 6151 142548 69 0 1 93 chain 25157 chr18 78077248 + 70819802 70820103 AluY 311 + 0 306 103969 78 0 9 46 3 0 124 1 0 49 chain 41492 chr18 78077248 + 70833230 70833706 L1PA3long 6157 - 0 480 67290 154 0 1 176 0 3 146 chain 72005 chr18 78077248 + 70833706 70834478 L1PA3long 6157 + 4919 5691 47471 772 chain 45848 chr18 78077248 + 70875981 70876587 L1PA7 6471 - 4 601 62182 152 11 10 25 20 3 267 7 16 124 chain 93022 chr18 78077248 + 70876587 70877792 L1PA7 6471 + 4686 5867 38651 112 27 0 224 0 1 155 9 8 11 0 5 419 1 0 81 4 3 162 chain 20541 chr18 78077248 + 70895803 70896070 AluY 311 + 0 260 125503 123 1 0 10 15 10 68 1 0 49 chain 32456 chr18 78077248 + 70908199 70908685 MER4A 717 - 255 717 80101 62 7 8 57 10 0 174 30 14 25 0 1 121 chain 22831 chr18 78077248 + 70910967 70911260 AluSp 311 + 20 310 116437 112 3 0 178 chain 23162 chr18 78077248 + 70931542 70931843 AluY 311 + 1 305 114841 51 3 5 66 5 6 176 chain 13510 chr18 78077248 + 70960563 70960729 L1PA5 6144 + 5979 6144 146324 153 2 1 11 chain 29211 chr18 78077248 + 70991849 70992272 LTR7Y 441 + 0 431 87998 103 9 0 57 56 72 91 0 1 107 chain 291987 chr18 78077248 + 70992282 70995912 HERVH-int 3825 + 0 3825 13904 212 0 11 300 85 18 29 2 0 10 1 0 24 7 56 38 44 1 44 6 7 13 0 2 14 5 10 434 15 0 158 0 10 63 0 2 225 8 35 383 1 2 1019 8 218 254 3 8 225 chain 28448 chr18 78077248 + 70997165 70997597 LTR7Y 441 + 0 441 91379 103 9 0 57 68 84 99 0 2 96 chain 23110 chr18 78077248 + 71002392 71002671 AluY 311 + 29 311 115093 28 0 1 203 0 2 48 chain 25888 chr18 78077248 + 71003947 71004258 AluYf5 307 + 0 307 100490 118 5 0 87 5 6 96 chain 82226 chr18 78077248 + 71041027 71042550 L1PBa 3878 + 2050 3293 42669 110 8 9 54 9 7 242 315 7 196 4 25 15 6 7 312 2 0 5 0 2 14 16 18 66 1 5 62 33 34 53 chain 75674 chr18 78077248 + 71044346 71045200 L1PA4 6152 + 5287 6143 45671 529 1 2 220 0 1 104 chain 8328 chr18 78077248 + 71058128 71058225 L1PA5 6144 - 174 290 169228 22 0 19 75 chain 15109 chr18 78077248 + 71058225 71058398 L1PA5 6144 + 5962 6135 141006 173 chain 34896 chr18 78077248 + 71063972 71064419 L1PA8 5853 - 6 446 76345 87 1 0 19 2 1 48 1 0 12 3 2 70 2 0 44 1 0 157 chain 9156 chr18 78077248 + 71070313 71070425 MER85 139 - 15 137 164784 25 0 10 87 chain 6991 chr18 78077248 + 71086634 71086759 L1MA3 4352 + 4213 4332 177531 47 2 0 22 1 0 6 1 0 19 8 7 14 1 0 4 chain 198703 chr18 78077248 + 71109881 71112062 L1PA3long 6157 - 0 2181 19303 2181 chain 144302 chr18 78077248 + 71112062 71113649 L1PA3long 6157 + 2402 3985 25428 765 4 0 818 chain 43108 chr18 78077248 + 71117106 71117871 L1MA2 4263 - 158 911 65280 13 36 34 72 7 8 13 74 71 92 12 9 39 6 7 85 1 0 77 5 2 15 2 1 36 1 0 71 6 5 5 0 1 97 chain 39523 chr18 78077248 + 71118329 71118822 L1PA7 6471 - 1 494 69994 148 0 1 4 1 0 340 chain 10941 chr18 78077248 + 71132584 71132723 THE1B 368 + 0 154 156438 40 0 15 99 chain 17003 chr18 78077248 + 71132731 71132917 L1P1 4361 - 1404 1590 135587 186 chain 358429 chr18 78077248 + 71136020 71140092 L1PA5 6144 - 19 4091 11394 107 3 0 1274 0 1 823 1 2 146 0 1 607 1 0 728 0 1 382 chain 24431 chr18 78077248 + 71144366 71144720 THE1B 368 - 0 359 107910 10 4 1 64 1 0 93 4 0 16 1 0 5 5 6 9 1 0 105 0 15 19 1 0 16 chain 64165 chr18 78077248 + 71182907 71183785 HERVL-int 5654 + 1 5654 50933 285 1 0 41 0 4763 135 7 4 98 0 13 24 0 3 287 chain 89323 chr18 78077248 + 71184229 71185272 MER11C 1089 - 26 1070 39874 213 0 2 172 1 0 83 0 1 11 10 8 322 0 1 231 chain 13228 chr18 78077248 + 71191517 71191779 L1PB1 5432 + 5182 5422 147361 38 2 1 15 1 0 43 2 1 16 1 0 4 2 0 13 9 0 9 7 5 5 1 0 14 2 0 24 1 0 34 1 0 18 chain 26674 chr18 78077248 + 71195063 71195433 L1PA8A 6298 - 8 376 97413 47 2 0 37 33 33 251 chain 5215 chr18 78077248 + 71195433 71195495 L1PA8A 6298 + 5841 5903 192878 62 chain 25453 chr18 78077248 + 71214761 71215138 THE1C 375 + 0 375 102442 185 1 2 25 29 25 47 4 5 86 chain 106480 chr18 78077248 + 71295358 71296518 L1PA3long 6157 - 15 1175 35099 1160 chain 162179 chr18 78077248 + 71296518 71298305 L1PA3long 6157 + 3229 5024 23037 667 0 2 48 0 1 697 0 5 375 chain 22404 chr18 78077248 + 71300113 71300382 AluSp 311 - 27 295 118467 159 1 0 109 chain 70377 chr18 78077248 + 71309935 71310706 L1PA4 6152 + 5380 6151 48224 771 chain 27097 chr18 78077248 + 71321770 71322141 THE1C 375 - 0 375 95954 25 1 0 211 8 12 41 6 7 79 chain 93061 chr18 78077248 + 71332578 71333709 L1PA6 6164 - 12 1142 38641 143 2 0 440 1 0 156 10 9 96 1 0 8 0 4 274 chain 37651 chr18 78077248 + 71338077 71338568 L1PA8 5853 + 5367 5853 72619 11 0 1 110 0 1 76 1 0 42 2 0 71 1 0 8 12 11 44 1 0 18 1 0 93 chain 5385 chr18 78077248 + 71367178 71367440 L1MC3 1789 - 352 604 191134 22 11 13 15 0 12 6 16 0 35 10 0 8 114 116 25 chain 4265 chr18 78077248 + 71373902 71373951 L1MC1 2226 + 1276 1325 203684 49 chain 24046 chr18 78077248 + 71468199 71468566 THE1C 375 + 0 375 110072 108 13 12 27 0 1 24 41 50 128 1 0 25 chain 30633 chr18 78077248 + 71471414 71471979 L1PB1 5432 - 8 532 83150 4 1 0 16 1 0 13 1 0 21 1 0 17 12 10 11 8 5 19 17 5 7 3 0 15 1 0 44 1 0 16 2 1 51 2 0 11 19 14 10 1 0 20 1 0 11 5 0 203 chain 3849 chr18 78077248 + 71487308 71487356 MADE1 96 + 48 96 209651 48 chain 87619 chr18 78077248 + 71488063 71489047 L1PA4 6152 - 1732 2728 40385 422 1 12 213 0 1 348 chain 151628 chr18 78077248 + 71489047 71490756 L1PA4 6152 + 4431 6143 24381 914 0 1 471 0 1 220 0 1 104 chain 16703 chr18 78077248 + 71515518 71515744 MER30 238 + 0 238 136397 109 5 20 61 3 0 48 chain 3821 chr18 78077248 + 71560945 71561101 L1MB1 2102 + 1893 2042 210070 42 27 25 13 55 51 14 1 0 4 chain 18516 chr18 78077248 + 71594447 71594668 AluY 311 + 73 292 131454 58 2 0 161 chain 10289 chr18 78077248 + 71604429 71604648 Tigger4a 237 - 0 237 159189 66 0 1 26 0 8 19 7 0 7 7 14 17 42 51 28 chain 4390 chr18 78077248 + 71656094 71656150 MER72B 755 + 699 755 202086 56 chain 25589 chr18 78077248 + 71657393 71657750 THE1B 368 - 0 368 101784 48 5 14 112 1 3 19 4 3 58 4 5 106 chain 190766 chr18 78077248 + 71661621 71666884 L1MA2 4263 - 183 4258 19972 22 7 0 83 29 27 22 2 1 29 0 1 61 41 39 56 1 2 75 1 0 71 1 0 6 5 2 14 4 3 88 1 2 90 7 11 72 3 0 197 2264 0 10 0 1 4 1 0 30 3 1 27 9 10 35 5 7 67 5 6 72 0 2 186 6 4 87 0 4 21 5 6 8 1 0 78 27 1100 33 1 0 218 4 5 33 0 1 365 31 30 55 5 8 70 3 1 35 11 10 108 2 1 16 4 5 4 1 0 10 1 0 81 4 2 87 0 2 15 11 15 14 0 2 8 2 0 5 5 7 23 0 4 24 1 4 34 chain 171692 chr18 78077248 + 71676424 71678289 L1PA3long 6157 - 8 1875 21857 245 0 1 1389 0 1 231 chain 7016 chr18 78077248 + 71711363 71711439 L1P2 5180 - 3267 3343 176060 76 chain 70147 chr18 78077248 + 71711439 71712217 L1PA3long 6157 + 5379 6157 48326 778 chain 415288 chr18 78077248 + 71720193 71726604 L1PA4 6152 + 9 6143 9658 119 0 14 87 356 161 15 109 91 22 163 78 11 13 13 90 102 77 25 6 23 14 1 4 6 3 0 57 96 71 32 46 45 32 29 30 48 22 13 388 0 3 36 1 0 102 2 0 59 1 28 247 12 11 324 0 3 248 0 8 122 6 8 409 2 0 258 0 3 71 0 1 173 0 1 4 9 7 438 0 1 205 1 9 311 22 21 118 0 1 1338 chain 20455 chr18 78077248 + 71754184 71754470 Tigger1 2417 - 40 333 125743 5 3 0 83 0 5 33 2 1 147 1 7 12 chain 371614 chr18 78077248 + 71765069 71770329 L1PB1 5432 + 22 5422 11036 117 10 1 15 7 8 228 7 11 150 0 1 77 3 6 52 4 3 202 4 5 118 312 0 60 0 4 258 0 1 14 1 2 49 0 9 67 0 4 45 0 3 142 2 3 596 6 7 13 0 1 283 0 5 250 3 0 8 1 2 44 0 3 272 2 1 166 0 446 276 1 0 188 0 1 266 0 1 6 1 6 81 4 5 17 0 1 82 3 4 395 15 11 17 0 1 6 1 0 9 1 0 9 2 0 3 2 0 9 2 0 52 3 2 14 1 0 31 11 13 16 3 0 6 16 6 19 2 0 5 1 0 15 7 5 18 1 0 21 1 0 13 1 0 14 1 0 4 chain 2949 chr18 78077248 + 71774521 71774555 L1MA8 2339 + 2037 2071 226084 34 chain 76189 chr18 78077248 + 71776332 71777224 L1PA6 6164 + 5266 6162 45371 49 1 5 87 0 3 746 3 0 6 chain 12168 chr18 78077248 + 71853620 71853755 L1PA5 6144 - 2 137 151544 135 chain 46511 chr18 78077248 + 71856137 71856691 MER41A 554 - 0 554 61588 145 0 4 282 4 0 123 chain 32024 chr18 78077248 + 71872832 71873289 MER4A1 472 + 0 460 80829 49 0 2 137 2 1 51 1 2 50 8 7 92 12 14 55 chain 45075 chr18 78077248 + 71905861 71906507 L1PB2 3958 + 3200 3835 62965 61 0 1 43 2 0 55 2 1 76 5 3 11 4 0 94 1 0 72 1 0 9 6 9 46 1 0 74 2 0 20 1 0 6 0 1 4 1 0 49 chain 167050 chr18 78077248 + 71960908 71963133 HERVH-int 3825 + 778 3168 22389 364 42 45 233 1 0 12 17 15 137 18 19 4 1 0 46 0 4 34 0 27 171 0 1 182 18 23 48 0 4 524 0 119 12 0 3 211 1 0 76 0 3 73 chain 52110 chr18 78077248 + 71994153 71994814 PABL_A 660 + 0 660 57554 62 5 0 6 0 5 54 1 0 151 0 1 282 9 8 91 chain 28300 chr18 78077248 + 72006732 72007109 L1MA8 2339 + 173 550 91944 63 1 0 242 2 0 7 0 1 9 0 4 23 1 0 23 1 0 5 chain 42905 chr18 78077248 + 72048460 72048965 MER9a1 513 - 0 513 65533 66 0 2 151 0 5 93 1 2 194 chain 58563 chr18 78077248 + 72050268 72051320 MER4E1 777 - 21 777 53667 167 310 0 30 8 0 13 2 3 107 1 2 82 0 19 315 0 1 17 chain 6996 chr18 78077248 + 72052823 72052905 MER50B 698 - 67 150 177493 26 0 1 56 chain 44017 chr18 78077248 + 72087586 72088135 MLT2A2 560 + 0 560 64184 399 3 14 147 chain 22139 chr18 78077248 + 72147164 72147504 THE1B 368 - 0 365 119624 100 0 1 24 42 52 19 1 0 113 0 15 41 chain 30077 chr18 78077248 + 72152449 72152768 AluYb8 318 - 0 318 84569 112 1 0 206 chain 34244 chr18 78077248 + 72167901 72168373 LTR2B 499 - 0 490 77289 182 1 0 8 5 6 173 0 19 46 14 4 15 1 11 21 1 0 5 chain 31181 chr18 78077248 + 72215809 72216216 MSTA-int 1630 + 0 416 82196 157 0 1 71 0 5 91 0 1 56 3 5 29 chain 38302 chr18 78077248 + 72216272 72216768 MER75 514 + 0 513 71705 173 1 0 137 0 9 10 0 10 159 1 0 15 chain 28401 chr18 78077248 + 72232159 72232512 THE1A 353 - 0 353 91575 243 6 5 80 0 1 24 chain 126384 chr18 78077248 + 72232512 72234085 THE1A-int 1579 - 0 1579 28980 294 2 7 533 6 15 8 9 0 65 0 1 4 1 0 524 0 1 127 chain 27977 chr18 78077248 + 72234085 72234429 THE1A 353 - 0 353 93084 167 0 8 68 1 0 38 0 1 44 0 1 26 chain 349165 chr18 78077248 + 72463337 72467405 L1PA5 6144 - 7 4107 11631 331 0 1 340 1 0 175 1 0 877 8 0 158 0 25 120 0 2 125 5 6 91 0 2 110 0 1 88 3 0 132 0 9 31 0 1 233 1 0 129 1 0 549 0 1 91 1 0 192 6 4 45 0 1 46 4 10 174 chain 119477 chr18 78077248 + 72522637 72523996 L1PA3long 6157 + 4826 6157 31229 296 23 0 375 0 1 504 8 1 136 0 1 17 chain 149953 chr18 78077248 + 72533236 72535043 L1PA7 6471 - 10 1820 24569 37 2 1 636 9 8 69 1 0 93 0 3 8 0 4 192 0 1 454 2 0 304 chain 198127 chr18 78077248 + 72535043 72537471 L1PA7 6471 + 2182 4632 19347 83 1 0 375 0 1 860 1 0 121 0 1 386 0 2 282 11 31 308 chain 16478 chr18 78077248 + 72542807 72543173 L1MA5A 2387 - 101 424 136986 34 68 37 27 2 1 32 9 5 43 1 0 38 1 0 33 31 26 47 chain 2917 chr18 78077248 + 72552384 72552420 L2a 937 + 118 154 226728 36 chain 100698 chr18 78077248 + 72677437 72678893 L1MA2 4263 - 174 1617 36580 26 29 22 16 3 0 60 15 13 132 4 8 10 3 0 12 0 1 14 25 26 38 5 0 27 4 3 19 1 0 27 0 2 46 7 3 18 4 3 655 3 9 253 chain 125071 chr18 78077248 + 72682213 72683778 THE1A-int 1579 - 0 1579 29372 68 0 1 11 0 5 209 8 13 621 1 0 4 10 11 130 0 1 221 0 2 197 1 0 41 1 2 42 chain 27959 chr18 78077248 + 72683778 72684135 THE1A 353 - 0 353 93134 134 3 0 109 1 0 110 chain 77807 chr18 78077248 + 72710488 72711317 L1HS 6032 + 5203 6032 44613 829 chain 27875 chr18 78077248 + 72746256 72746556 AluYg6 310 - 9 309 93437 300 chain 23397 chr18 78077248 + 72785833 72786202 THE1D 372 + 12 372 113664 56 10 0 4 13 0 94 27 28 117 0 13 48 chain 30639 chr18 78077248 + 72805768 72806179 LTR7 482 - 0 482 83139 190 0 31 36 0 1 109 8 46 36 5 6 27 chain 13697 chr18 78077248 + 72857970 72858170 L1P4 1494 - 782 982 145607 89 3 4 68 6 5 34 chain 24047 chr18 78077248 + 72892727 72893015 AluSq2 311 - 7 297 110063 170 0 2 118 chain 23978 chr18 78077248 + 73064202 73064549 THE1C 375 + 0 335 110457 61 31 24 98 1 0 100 9 5 47 chain 24763 chr18 78077248 + 73066231 73066565 THE1C 375 + 0 335 106096 176 18 19 140 chain 19682 chr18 78077248 + 73148961 73149243 L1MA2 4263 + 3827 4100 128154 129 11 9 93 7 0 42 chain 6535 chr18 78077248 + 73159176 73159283 MLT1A0 366 + 31 139 180969 22 16 17 69 chain 3309 chr18 78077248 + 73169861 73169901 L1ME2 1516 + 1031 1071 218788 40 chain 23432 chr18 78077248 + 73214147 73214516 L1MA6 2487 - 262 627 113468 138 45 43 40 2 1 70 1 0 73 chain 90127 chr18 78077248 + 73224161 73225408 L1PBa 3878 + 1046 2287 39601 78 4 0 10 0 20 41 1 2 40 9 13 102 14 0 347 0 1 222 21 14 15 14 7 329 chain 32920 chr18 78077248 + 73259788 73260255 L1PA8 5853 + 5404 5853 79338 118 12 1 41 1 0 45 2 0 69 17 15 47 2 1 22 1 0 90 chain 3809 chr18 78077248 + 73315789 73315840 L1MA6 2487 + 2339 2387 210233 39 3 0 9 chain 97039 chr18 78077248 + 73316428 73317581 L1PA7 6471 + 5305 6463 37552 294 0 4 18 4 0 79 0 2 435 0 3 323 chain 3471 chr18 78077248 + 73334651 73334689 MLT1B 390 + 105 143 215794 38 chain 25003 chr18 78077248 + 73341512 73341856 THE1B 368 - 6 368 104765 72 4 1 90 1 5 26 1 0 100 6 24 44 chain 18883 chr18 78077248 + 73341859 73342081 THE1B-int 1605 - 5 227 130417 222 chain 6696 chr18 78077248 + 73346602 73346755 MSTA 426 + 28 204 179717 26 0 1 8 50 74 62 2 0 5 chain 38100 chr18 78077248 + 73374907 73375365 LTR2 463 - 0 463 71981 316 0 1 12 0 4 130 chain 17818 chr18 78077248 + 73421609 73421946 Tigger4b 360 - 0 314 133343 12 11 12 39 3 0 91 13 16 32 15 16 83 25 0 13 chain 24570 chr18 78077248 + 73447721 73448084 THE1B 368 + 2 361 107143 42 0 15 44 1 0 63 9 8 22 4 0 3 13 0 162 chain 23656 chr18 78077248 + 73449718 73450078 THE1B 368 + 0 367 112276 39 6 21 116 1 0 110 33 26 55 chain 11334 chr18 78077248 + 73460748 73460868 L1PA5 6144 + 6012 6132 154945 120 chain 29673 chr18 78077248 + 73550142 73550521 MLT2A2 560 + 0 379 85930 168 12 12 199 chain 290888 chr18 78077248 + 73550581 73554336 HERVL-int 5654 + 1886 5654 13967 68 0 1 142 0 1 107 4 21 294 5 0 325 0 1 217 0 1 313 1 5 462 9 5 244 0 1 107 0 1 250 1 10 26 17 21 210 0 1 90 2 1 156 10 6 8 9 0 444 8 4 200 9 8 17 chain 567356 chr18 78077248 + 73558806 73564838 L1HS 6032 + 0 6032 65 6032 chain 30123 chr18 78077248 + 73570021 73570337 AluYb8 318 + 0 316 84408 316 chain 4752 chr18 78077248 + 73580379 73580435 MLT1C 463 + 63 119 197893 56 chain 17436 chr18 78077248 + 73588679 73589004 THE1B 368 + 0 368 134423 44 0 15 47 19 31 35 2 1 25 42 52 49 1 0 7 5 13 49 chain 38714 chr18 78077248 + 73648508 73649006 MER41A 554 - 25 543 71131 127 0 1 34 0 4 53 0 10 103 1 0 20 8 13 75 0 1 77 chain 64869 chr18 78077248 + 73650115 73650887 LTR17 781 - 0 775 50624 322 0 3 129 1 0 274 0 1 46 chain 177208 chr18 78077248 + 73663529 73665674 L1PA7 6471 - 8 2163 21231 4 0 1 310 8 7 439 0 2 926 1 13 85 10 7 48 2 1 312 chain 10770 chr18 78077248 + 73678280 73678410 MER50 708 + 565 695 157109 130 chain 17244 chr18 78077248 + 73687967 73688213 L1PA8 5853 + 5619 5853 134941 38 8 0 22 1 0 7 2 4 5 3 0 45 2 1 19 1 0 93 chain 8260 chr18 78077248 + 73701897 73701988 L1PA5 6144 - 448 539 169625 91 chain 32445 chr18 78077248 + 73701988 73702352 L1PA5 6144 + 5778 6142 80118 364 chain 60629 chr18 78077248 + 73713228 73713879 SVA_D 2077 + 1425 2077 52505 20 1 0 186 0 2 444 chain 9692 chr18 78077248 + 73722230 73722361 L1P4 1494 - 563 708 162126 23 0 17 97 3 0 8 chain 16886 chr18 78077248 + 73722361 73722606 L1PA16 3655 + 3331 3575 135876 70 24 23 151 chain 24552 chr18 78077248 + 73724527 73724913 THE1C 375 + 0 375 107237 27 1 0 20 10 7 10 35 34 83 7 0 132 0 1 61 chain 18421 chr18 78077248 + 73748261 73748480 L1PA7 6471 + 6254 6470 131710 205 3 0 11 chain 61782 chr18 78077248 + 73761721 73762424 L1PA4 6152 + 5432 6135 52005 606 0 1 85 1 0 11 chain 27115 chr18 78077248 + 73774234 73774576 L1PA7 6471 - 6 359 95886 142 2 3 12 4 14 182 chain 6934 chr18 78077248 + 73820066 73820209 Tigger3a 397 + 145 327 177942 70 44 83 29 chain 2994 chr18 78077248 + 73829909 73829947 tRNA-Thr-ACA 39 - 1 39 225141 38 chain 17150 chr18 78077248 + 73922018 73922365 L1PB1 5432 - 14 327 135164 17 1 0 10 1 0 21 1 0 24 2 0 14 1 0 5 3 1 18 10 1 7 2 0 4 1 0 14 5 4 41 1 0 16 2 1 52 2 0 11 4 0 13 3 2 4 1 0 24 3 0 9 chain 16143 chr18 78077248 + 73957342 73957523 L1PA5 6144 - 9 190 137922 181 chain 51679 chr18 78077248 + 73960703 73961385 L1PA8 5853 + 5174 5853 57836 101 1 3 286 1 0 44 2 0 70 2 1 7 1 0 11 5 7 36 2 1 19 1 0 93 chain 29668 chr18 78077248 + 73972610 73972921 AluYb8 318 - 7 318 85965 311 chain 13783 chr18 78077248 + 74000000 74000154 AluYc 301 + 137 291 145327 154 chain 52431 chr18 78077248 + 74010444 74011022 L1PA4 6152 + 5573 6151 57335 578 chain 32210 chr18 78077248 + 74050292 74050733 LTR71A 459 - 0 459 80507 14 2 0 223 1 2 18 1 17 75 6 9 101 chain 9465 chr18 78077248 + 74113036 74113168 MER85 139 + 0 139 163250 97 1 13 6 5 0 23 chain 6902 chr18 78077248 + 74251678 74251773 MLT2D 439 + 44 136 178168 18 3 0 74 chain 24419 chr18 78077248 + 74272823 74273108 AluYf4 310 + 0 285 107974 212 0 1 8 1 0 64 chain 18809 chr18 78077248 + 74273913 74274123 L1PA4 6152 - 250 459 130651 84 1 0 125 chain 3314 chr18 78077248 + 74274123 74274160 L1PA2 6032 + 5995 6032 212341 37 chain 12709 chr18 78077248 + 74306463 74306643 MER30 238 + 46 238 149422 51 12 27 75 3 0 39 chain 143191 chr18 78077248 + 74310984 74312651 LTR12C 1709 - 0 1709 25617 481 0 4 106 3 1 5 1 0 240 0 40 395 0 1 122 1 0 4 0 1 309 chain 25372 chr18 78077248 + 74319941 74320246 AluSp 311 + 4 309 102821 305 chain 19483 chr18 78077248 + 74321366 74321765 L1PB1 5432 - 12 383 128707 16 1 0 6 6 7 21 1 0 24 2 0 14 1 0 4 6 4 27 16 5 11 8 7 38 1 0 15 2 1 53 15 9 12 1 0 11 1 0 21 3 0 7 1 4 54 chain 24727 chr18 78077248 + 74337782 74338074 AluY 311 + 10 298 106284 33 0 1 82 5 0 172 chain 27202 chr18 78077248 + 74340145 74340525 L1PA8 5853 - 0 373 95586 92 2 1 19 2 1 25 6 0 6 3 8 13 1 0 8 1 0 18 0 1 52 2 0 47 1 0 82 chain 146479 chr18 78077248 + 74340526 74342956 L1PB1 5432 - 151 2226 25094 45 1 0 15 2 1 52 16 10 14 1 0 6 1 0 24 39 11 14 23 23 50 1 0 16 9 17 6 1 0 178 7 8 112 0 4 7 0 19 27 0 1 125 1 0 280 1 2 4 1 0 64 5 4 85 7 8 86 0 1 226 34 13 88 331 0 98 3 7 324 chain 31745 chr18 78077248 + 74355559 74355913 L1PA4 6152 + 5797 6151 81253 354 chain 127760 chr18 78077248 + 74356852 74358425 SVA_D 2077 + 6 2077 28630 20 7 0 467 116 0 274 3 41 62 0 583 624 chain 3109 chr18 78077248 + 74357412 74357462 SVA_D 2077 + 599 649 148489 50 chain 27705 chr18 78077248 + 74360615 74361351 MER75 514 - 0 436 94023 20 3 0 70 307 0 134 10 22 95 1 0 46 17 16 33 chain 28793 chr18 78077248 + 74365372 74365671 AluYa5 310 - 11 310 89934 299 chain 38733 chr18 78077248 + 74366291 74366862 LTR3B_ 500 - 0 500 71100 41 74 0 122 0 3 31 2 1 58 5 6 238 chain 147477 chr18 78077248 + 74375046 74377059 L1PA7 6471 - 5 1715 24967 150 0 1 615 0 2 77 2 1 308 306 0 190 0 1 365 chain 40417 chr18 78077248 + 74383859 74384483 MER41A 554 + 0 554 68710 165 1 0 19 0 4 10 2 3 30 3 0 23 1 5 59 0 1 4 1 0 95 82 7 129 chain 6224 chr18 78077248 + 74411622 74412048 L1MA10 1535 - 44 440 183374 20 45 31 22 72 66 20 198 188 49 chain 69945 chr18 78077248 + 74416445 74417281 L1PA7 6471 - 2 850 48414 146 0 1 8 0 7 434 0 4 248 chain 3337 chr18 78077248 + 74428791 74428900 MSTC 436 - 104 230 218282 33 57 74 19 chain 28503 chr18 78077248 + 74428984 74429422 MLT2A1 477 - 0 477 91174 49 3 43 178 5 4 4 0 1 24 5 9 17 37 31 56 0 1 60 chain 27518 chr18 78077248 + 74436920 74437248 L1PA7 6471 + 6122 6457 94606 193 0 1 43 0 6 92 chain 14938 chr18 78077248 + 74444134 74444546 HUERS-P1-int 2401 - 1874 2196 141513 23 18 0 23 2 0 8 1 0 38 1 0 5 4 1 43 125 73 14 11 8 14 4 0 34 6 1 12 1 0 25 chain 11427 chr18 78077248 + 74445149 74445294 LTR8 732 - 0 145 154575 145 chain 24283 chr18 78077248 + 74454009 74454301 AluSg7 307 - 11 307 108753 21 0 2 77 1 2 62 0 1 131 chain 28146 chr18 78077248 + 74456329 74456626 AluYa5 310 - 5 302 92475 297 chain 72921 chr18 78077248 + 74458147 74459306 L1PB1 5432 + 4342 5423 47057 287 0 1 84 1 0 111 3 4 68 0 1 205 1 2 11 61 10 12 1 0 8 1 0 11 16 10 53 2 1 11 7 6 43 1 0 15 1 0 6 20 10 14 3 1 5 1 0 14 2 0 19 8 7 19 1 0 13 1 0 19 chain 22938 chr18 78077248 + 74486768 74487055 AluSg7 307 - 16 306 115916 13 1 3 143 0 1 16 1 0 57 0 1 56 chain 30840 chr18 78077248 + 74488304 74488934 MER4A1 472 - 0 472 82787 200 188 4 5 0 1 15 1 22 38 4 5 69 0 1 81 1 0 9 5 8 14 chain 140361 chr18 78077248 + 74489020 74490682 LTR12C 1709 + 0 1709 26090 43 0 2 391 0 1 402 0 41 231 1 0 6 2 0 107 0 4 212 0 1 74 1 2 192 chain 40611 chr18 78077248 + 74499663 74500436 LTR12C 1709 - 0 931 68419 84 8 17 136 4 1 5 0 3 100 167 326 14 0 41 28 51 1 116 1 0 59 chain 38567 chr18 78077248 + 74503298 74503865 LTR61 567 + 0 567 71343 25 0 1 27 4 15 118 9 1 35 3 0 73 1 0 40 5 6 21 5 0 26 6 9 16 0 1 153 chain 3298 chr18 78077248 + 74512660 74512696 U6 107 - 43 79 218998 36 chain 18297 chr18 78077248 + 74523668 74523896 MER41A 554 - 192 418 132082 15 2 0 211 chain 7330 chr18 78077248 + 74526911 74527013 L1PA16 3655 + 3490 3592 175235 16 0 2 38 0 1 32 3 0 13 chain 3462 chr18 78077248 + 74552693 74552731 MER41A 554 - 376 414 215968 38 chain 24127 chr18 78077248 + 74654807 74655101 AluY 311 + 11 305 109601 17 8 7 97 0 1 172 chain 25981 chr18 78077248 + 74658034 74658388 THE1B 368 + 0 368 100091 44 0 15 109 1 0 29 3 0 7 1 5 84 1 0 75 chain 349504 chr18 78077248 + 74672985 74677769 L1PB1 5432 - 12 5398 11625 11 6 5 13 1 0 21 1 0 24 2 0 14 1 0 4 6 4 27 14 1 16 1 0 44 1 0 14 3 2 42 11 9 10 17 12 13 1 0 20 46 3 8 3 0 115 11 0 18 2 0 146 16 12 191 26 22 26 0 1 153 7 15 65 8 13 25 0 7 8 7 0 20 1 0 534 18 0 118 0 2 120 7 6 4 0 1 163 0 2 202 2 0 22 0 1 76 1 2 33 0 1 131 11 10 122 1 2 127 0 5 81 0 3 138 0 3 641 0 2 21 0 687 205 1 0 436 1 0 92 0 2 163 4 5 69 chain 5553 chr18 78077248 + 74731227 74731325 MLT1C 463 + 66 161 189539 21 1 2 36 6 0 21 1 3 12 chain 15134 chr18 78077248 + 74736098 74736314 MER30 238 + 0 236 140963 99 2 0 5 5 24 24 0 6 41 3 0 37 chain 131585 chr18 78077248 + 74739968 74741416 SVA_D 2077 - 21 2075 27721 618 2 225 122 0 183 52 0 194 9 0 2 140 0 4 505 chain 153106 chr18 78077248 + 74752191 74753890 L1PA4 6152 + 4444 6152 24217 860 0 4 833 0 5 6 chain 14527 chr18 78077248 + 74783361 74783554 MER107 203 - 1 198 142803 32 3 6 150 0 1 8 chain 3435 chr18 78077248 + 74792970 74793008 U3 216 - 178 216 216471 38 chain 121871 chr18 78077248 + 74854517 74856061 THE1B-int 1605 + 0 1583 30423 430 1 26 288 0 9 11 9 0 47 5 6 79 0 1 9 0 10 388 1 2 230 0 1 46 chain 17317 chr18 78077248 + 74873591 74873825 MLT2A2 560 - 27 255 134742 132 4 1 85 3 0 10 chain 6300 chr18 78077248 + 74873825 74873905 MLT2A2 560 + 481 560 177961 24 1 0 55 chain 7680 chr18 78077248 + 74888915 74889013 L1PB1 5432 - 487 585 173039 98 chain 5289 chr18 78077248 + 74889021 74889086 MSTB2 466 + 399 464 192129 65 chain 14547 chr18 78077248 + 74893399 74893571 L1PA5 6144 + 5972 6144 142733 172 chain 63559 chr18 78077248 + 74898014 74899055 MER11B 1079 - 0 1079 51212 22 11 0 23 0 1 153 0 1 53 131 169 6 0 6 7 6 0 43 18 19 32 6 8 12 0 1 15 24 12 19 21 20 123 1 18 217 0 1 98 chain 22155 chr18 78077248 + 74930265 74930545 AluSp 311 - 22 311 119571 11 3 11 260 0 1 6 chain 34355 chr18 78077248 + 74942100 74942724 L1PB1 5432 + 4844 5422 77122 66 0 1 178 23 16 9 1 0 28 22 17 9 2 0 52 3 2 15 1 0 42 2 1 16 1 0 6 26 7 18 2 0 5 1 0 14 2 0 24 1 0 20 3 1 13 1 0 18 chain 15246 chr18 78077248 + 74948885 74949250 THE1C 375 + 2 375 140650 28 1 0 17 0 6 17 16 17 19 124 127 117 1 0 25 chain 232791 chr18 78077248 + 74997302 75000000 L1PA6 6164 - 2 2698 17151 6 2 0 140 0 8 8 8 0 700 1 0 1536 0 1 297 chain 267500 chr18 78077248 + 75000000 75003248 L1P2 5180 - 1722 4977 15319 269 1 0 17 0 1 1940 1 3 82 10 11 224 5 4 92 9 0 13 0 15 272 1 0 54 1 0 140 12 15 63 1 0 36 1 0 4 chain 11334 chr18 78077248 + 75005956 75006148 MSTA 426 + 0 222 154944 63 1 0 42 13 27 41 18 35 14 chain 2957 chr18 78077248 + 75008457 75008492 Charlie1a 1436 - 1304 1339 225941 35 chain 13592 chr18 78077248 + 75014986 75015281 THE1B 368 + 1 307 146006 46 32 39 19 11 12 52 1 0 27 0 43 10 38 0 26 1 0 32 chain 9521 chr18 78077248 + 75017256 75017381 MER85 139 - 0 135 162971 38 2 12 85 chain 116944 chr18 78077248 + 75023914 75025510 MER57-int 2662 - 493 2561 32145 222 34 37 465 2 3 6 1 0 31 1 0 4 2 3 27 0 3 6 1 3 226 0 43 16 0 1 69 1 2 59 1 0 66 6 14 170 4 0 61 0 404 78 0 13 29 1 0 7 chain 12533 chr18 78077248 + 75025899 75026040 MER57-int 2662 + 2028 2169 150111 141 chain 208057 chr18 78077248 + 75038298 75040622 L1PA4 6152 - 0 2325 18633 7 0 2 331 1 0 1985 chain 61132 chr18 78077248 + 75060875 75061627 L1PA6 6164 - 5 770 52281 186 8 0 194 1 19 225 0 3 138 chain 24947 chr18 78077248 + 75061633 75061936 L1PA6 6164 + 5098 5397 105070 142 6 0 100 0 2 55 chain 184210 chr18 78077248 + 75062664 75065158 L1PBa1 4058 - 18 2472 20568 42 1 0 17 1 0 9 1 0 4 1 0 6 12 9 9 1 0 16 3 0 9 1 0 4 2 1 19 2 0 12 2 0 3 5 0 29 3 1 108 2 0 41 1 0 29 1 0 6 1 0 40 13 3 43 0 1 5 2 1 24 2 1 98 0 2 13 1 0 186 1 0 57 0 1 162 5 1 57 0 13 487 19 9 5 1 0 5 0 1 55 4 5 290 0 1 73 1 0 178 1 0 84 0 1 102 1 0 76 chain 25464 chr18 78077248 + 75074543 75074891 THE1B 368 - 0 366 102385 43 0 12 10 2 0 106 6 0 25 1 0 113 0 15 42 chain 21149 chr18 78077248 + 75083280 75083546 L1PA7 6471 - 1 267 123374 11 2 0 80 0 1 151 1 2 21 chain 542631 chr18 78077248 + 75127943 75133952 L1PA3long 6157 - 8 6153 2401 2601 4 5 2156 0 4 477 11 139 402 0 1 61 2 1 5 0 1 86 0 1 56 0 1 148 chain 19693 chr18 78077248 + 75138749 75138985 L1PREC2 3366 - 651 887 128126 236 chain 59706 chr18 78077248 + 75141228 75141954 L1P3 4156 - 17 753 52986 24 2 1 7 2 0 137 0 1 121 0 1 199 0 1 153 0 10 81 chain 76198 chr18 78077248 + 75141981 75142941 L1PA7 6471 + 5525 6470 45361 32 20 1 62 5 8 70 0 2 287 0 3 319 1 0 154 3 0 7 chain 4518 chr18 78077248 + 75143003 75143057 L1M3f 2199 - 1345 1399 200573 54 chain 6871 chr18 78077248 + 75155430 75155559 L1PB1 5432 - 12 135 178426 16 15 13 21 1 0 39 1 0 6 2 0 28 chain 7591 chr18 78077248 + 75160695 75160788 Tigger1 2417 + 1376 1469 173608 93 chain 16588 chr18 78077248 + 75187728 75187922 L1PB1 5432 - 1319 1513 136698 194 chain 88844 chr18 78077248 + 75187926 75189240 L1PB1 5432 + 4129 5391 40063 77 1 0 404 3 5 9 1 2 17 0 1 284 3 0 57 0 1 111 42 18 23 10 8 12 16 10 52 2 1 16 1 0 44 1 0 11 28 16 19 11 8 11 2 0 12 13 12 21 chain 60529 chr18 78077248 + 75192130 75192874 L1PA7 6471 - 4 753 52566 139 0 5 13 1 2 94 1 0 496 chain 43299 chr18 78077248 + 75200875 75201591 L1PA15 4387 + 3635 4353 65052 17 0 3 6 1 0 22 1 6 124 2 0 77 2 0 42 1 0 172 2 1 22 0 8 21 1 7 21 2 1 18 17 14 39 28 26 32 3 1 11 8 3 24 chain 22471 chr18 78077248 + 75222159 75222411 L1PA6 6164 - 331 583 118152 252 chain 26520 chr18 78077248 + 75222414 75222736 L1PA6 6164 + 5835 6159 97973 117 0 3 52 1 0 152 chain 25577 chr18 78077248 + 75238079 75238433 THE1A 353 + 0 353 101839 98 13 12 123 0 3 5 3 0 112 chain 542250 chr18 78077248 + 75244105 75250248 L1PA5 6144 - 6 6144 2464 141 16 16 341 2 0 2083 0 1 2545 5 0 202 0 1 808 chain 8661 chr18 78077248 + 75282209 75282308 L1PA6 6164 - 2 101 167418 99 chain 507236 chr18 78077248 + 75289711 75295821 L1PA6 6164 + 0 6149 6383 113 4 0 238 0 2 95 1 2 117 1 0 268 9 16 356 1 0 393 0 1 299 1 0 403 7 12 13 9 0 640 1 9 219 5 6 320 1 3 178 1 3 246 0 1 610 0 16 737 0 8 125 0 1 552 1 2 9 1 0 136 chain 80384 chr18 78077248 + 75297297 75298189 L1PA4 6152 + 5259 6152 43439 779 0 1 113 chain 17405 chr18 78077248 + 75298425 75298780 THE1B 368 + 2 368 134489 109 0 3 6 16 15 42 100 109 82 chain 3964 chr18 78077248 + 75298853 75298898 MER5A 189 + 0 45 207923 45 chain 4536 chr18 78077248 + 75320862 75320916 MER52C 1267 + 0 54 200397 54 chain 4980 chr18 78077248 + 75334051 75334112 MER51A 677 - 417 478 195368 61 chain 5518 chr18 78077248 + 75342413 75342476 THE1B 368 - 305 368 189863 63 chain 508304 chr18 78077248 + 75349076 75355207 L1PA6 6164 + 0 6160 6297 315 3 24 8 21 0 112 12 20 30 2 1 177 1 0 40 2 1 59 0 17 111 0 1 147 1 0 1262 0 1 14 0 1 849 0 2 360 20 5 711 0 1 925 0 1 100 0 1 19 1 0 442 0 6 350 0 10 37 chain 27605 chr18 78077248 + 75392146 75392469 L1P1 4361 - 1088 1412 94334 75 0 1 26 1 0 11 0 1 210 chain 5911 chr18 78077248 + 75392469 75392539 L1PA5 6144 + 6058 6128 186080 70 chain 9301 chr18 78077248 + 75501714 75501818 L1PA5 6144 + 5852 5956 164054 104 chain 39302 chr18 78077248 + 75504940 75505469 L1PA8 5853 - 0 522 70318 17 3 0 76 1 0 17 1 0 50 6 5 9 2 1 70 5 3 43 1 0 185 0 3 43 chain 27906 chr18 78077248 + 75509267 75509562 AluYd8 298 + 0 295 93344 295 chain 11336 chr18 78077248 + 75533769 75533954 MSTB 430 + 227 413 154931 16 34 35 135 chain 77296 chr18 78077248 + 75560063 75560933 L1PA4 6152 + 5273 6152 44834 31 0 4 833 0 5 6 chain 36391 chr18 78077248 + 75579633 75580147 MER41A 554 - 28 554 74375 41 12 17 13 0 1 14 0 8 9 20 14 11 1 0 83 4 5 121 0 4 185 chain 24760 chr18 78077248 + 75640285 75640590 AluY 311 + 3 301 106108 129 0 1 20 1 2 134 9 0 12 chain 18381 chr18 78077248 + 75645570 75645914 L1PB1 5432 + 4976 5410 131840 106 0 3 6 25 135 10 1 0 45 1 0 15 14 1 30 2 0 4 1 0 12 6 4 23 1 0 21 1 0 13 1 0 6 chain 3593 chr18 78077248 + 75686057 75686101 L1MC3 1789 + 815 859 213769 44 chain 13182 chr18 78077248 + 75699346 75699531 L1PA8 5853 + 5679 5853 147537 7 1 0 53 11 2 19 1 0 93 chain 19942 chr18 78077248 + 75783444 75783690 Charlie3 2679 - 0 249 127325 133 0 3 113 chain 6837 chr18 78077248 + 75784445 75784544 L1MA7 2200 - 225 323 178675 5 0 2 19 3 0 72 chain 3803 chr18 78077248 + 75817121 75817165 MLT1A1-int 1737 + 30 74 210362 44 chain 28500 chr18 78077248 + 75852249 75852549 AluYa5 310 - 10 310 91183 300 chain 25122 chr18 78077248 + 75863201 75863547 THE1B 368 + 0 368 104166 40 0 15 113 1 0 28 5 13 84 1 0 17 0 1 57 chain 30467 chr18 78077248 + 75933049 75933366 AluYb8 318 - 1 318 83500 317 chain 33417 chr18 78077248 + 75944802 75945183 L1PA4 6152 - 3 383 78535 257 1 0 123 chain 60694 chr18 78077248 + 75949524 75950436 L1PA5 6144 + 5431 6143 52475 143 0 3 339 203 0 227 chain 16350 chr18 78077248 + 75950021 75950208 L1PA5 6144 + 5934 6121 137344 187 chain 5571 chr18 78077248 + 75999696 75999757 L1PA5 6144 - 213 274 189361 61 chain 17507 chr18 78077248 + 75999757 75999957 L1PA5 6144 + 5942 6142 134244 200 chain 26952 chr18 78077248 + 76023610 76023912 L1PA5 6144 - 6 308 96443 302 chain 21720 chr18 78077248 + 76048003 76048270 AluSg 306 + 30 296 121313 75 1 0 23 1 0 4 0 1 163 chain 7896 chr18 78077248 + 76100754 76100934 L1MA4 2864 - 971 1164 171676 4 1 0 93 63 77 19 chain 13435 chr18 78077248 + 76107051 76107220 Tigger3b 1229 - 721 891 146557 128 1 2 40 chain 37475 chr18 78077248 + 76118961 76119537 L1PA11 4918 + 4004 4567 72850 312 12 9 63 13 19 67 2 0 13 3 2 18 44 32 15 1 0 13 chain 14503 chr18 78077248 + 76129770 76129935 L1PA5 6144 - 10 176 142882 24 0 1 141 chain 27984 chr18 78077248 + 76141238 76141591 THE1D 372 + 0 366 93056 65 0 10 115 0 3 173 chain 27802 chr18 78077248 + 76144162 76144846 THE1C 375 - 2 375 93684 23 1 0 114 311 0 41 13 14 181 chain 11044 chr18 78077248 + 76188778 76188951 MER30B 195 - 0 175 156042 71 6 0 9 0 6 26 6 9 40 1 0 14 chain 22125 chr18 78077248 + 76202134 76202420 L1PA8 5853 - 880 1181 117636 31 0 1 134 11 25 110 chain 64951 chr18 78077248 + 76202420 76203304 L1PA8 5853 + 4975 5853 50593 30 0 1 4 2 0 298 1 2 254 2 1 45 2 0 68 1 0 10 2 1 71 2 1 92 chain 27690 chr18 78077248 + 76213135 76213425 AluYb8 318 + 28 318 94079 290 chain 29248 chr18 78077248 + 76222340 76222746 L1PA8 5853 - 0 399 87796 93 1 0 19 2 1 38 29 27 62 5 3 46 1 0 110 chain 38100 chr18 78077248 + 76222758 76223243 L1PA8 5853 + 4957 5441 71983 48 5 4 63 2 0 10 0 2 357 chain 7794 chr18 78077248 + 76242265 76242358 L1PA4 6152 - 0 94 172333 6 0 1 87 chain 28505 chr18 78077248 + 76250648 76251012 L1PA6 6164 + 5781 6147 91170 50 0 1 172 17 18 125 chain 30366 chr18 78077248 + 76369533 76369874 L1PA4 6152 + 5746 6087 83747 341 chain 27170 chr18 78077248 + 76432090 76432390 AluY 311 + 10 311 95692 122 0 1 178 chain 29455 chr18 78077248 + 76455576 76455928 THE1B-int 1605 - 1244 1597 86822 188 0 1 164 chain 17959 chr18 78077248 + 76455936 76456294 THE1B 368 - 0 366 132959 125 63 68 49 23 24 20 18 20 60 chain 22572 chr18 78077248 + 76551835 76552137 AluSg 306 + 11 291 117707 271 22 0 9 chain 19171 chr18 78077248 + 76562411 76562672 L1PA8 5853 - 0 254 129612 93 1 0 19 2 1 45 2 0 16 2 1 71 2 0 8 chain 30862 chr18 78077248 + 76562672 76563027 L1PA8 5853 + 5202 5557 82747 355 chain 22859 chr18 78077248 + 76610252 76610596 THE1B 368 - 0 368 116295 50 0 1 74 35 45 29 3 0 48 2 3 59 0 15 44 chain 3084 chr18 78077248 + 76793052 76793150 MIR 256 - 40 139 223235 18 47 48 33 chain 112117 chr18 78077248 + 76832148 76833684 SVA_B 1603 - 0 1602 33634 5 2 0 517 8 167 7 0 1 81 74 0 31 3 0 10 9 12 35 39 0 23 13 53 590 0 5 22 23 8 23 10 1 11 chain 4906 chr18 78077248 + 76832769 76832842 SVA_B 1603 - 782 855 109995 7 25 25 41 chain 2621 chr18 78077248 + 76832930 76832969 SVA_B 1603 - 983 1022 109995 39 chain 420856 chr18 78077248 + 76838666 76843852 L1PA7 6471 - 1 6455 9515 13 1 4 723 0 13 92 1 0 4 1 0 18 0 4 508 6 12 130 1 0 273 0 4 5 0 3 61 0 1 31 9 23 336 0 2 492 0 8 198 2 0 7 84 1280 11 0 8 35 0 5 328 6 7 147 0 4 439 0 2 233 0 1 599 1 2 195 12 9 184 chain 3402 chr18 78077248 + 76841594 76841630 L1P3 4156 + 3461 3497 217027 36 chain 7287 chr18 78077248 + 76849069 76849252 L1PB1 5432 + 5264 5427 175534 17 1 0 10 19 6 30 2 0 5 20 17 21 1 0 22 0 3 9 1 0 18 2 0 5 chain 43820 chr18 78077248 + 76857511 76857992 L1PA2 6032 - 137 617 64100 119 1 0 361 chain 58610 chr18 78077248 + 76857992 76858633 L1PA2 6032 + 4621 5269 53634 225 0 7 416 chain 5199 chr18 78077248 + 76874918 76874973 L1HS 6032 - 1959 2014 192076 55 chain 183234 chr18 78077248 + 76874973 76876935 L1HS 6032 + 4070 6032 20657 1962 chain 25720 chr18 78077248 + 76896723 76897086 THE1C 375 - 0 375 101217 25 1 0 31 0 1 44 1 0 79 5 10 25 1 11 22 3 0 23 0 1 103 chain 24784 chr18 78077248 + 76901036 76901361 THE1C 375 + 7 333 105974 120 0 3 52 1 2 63 8 5 81 chain 11327 chr18 78077248 + 76911731 76911872 L1PA7 6471 - 1 149 154974 13 1 8 127 chain 3920 chr18 78077248 + 76932977 76933182 L1MD2 1676 - 578 821 208547 22 144 182 39 chain 6915 chr18 78077248 + 76959343 76959480 Tigger3b 1229 - 550 701 178079 59 37 53 21 2 0 18 chain 114336 chr18 78077248 + 76990199 76991773 L1PB1 5432 + 3447 5106 32985 205 14 13 59 13 10 197 0 1 30 6 5 67 5 63 175 0 13 160 0 6 153 18 17 184 28 36 143 0 3 27 0 2 90 chain 2719 chr18 78077248 + 77019954 77019998 MLT1C-int 1263 + 457 497 229923 34 4 0 6 chain 84908 chr18 78077248 + 77031245 77032199 L1PA4 6152 - 6 964 41549 107 0 1 34 3 2 694 0 4 116 chain 555742 chr18 78077248 + 77044624 77050765 L1PA3long 6157 - 0 6157 747 83 0 1 64 0 1 694 0 4 1384 4 5 616 0 2 909 0 4 71 1 0 1154 0 3 419 1 0 378 0 1 154 0 1 209 chain 7947 chr18 78077248 + 77102506 77102600 L1PA2 6032 + 5938 6032 171343 94 chain 28751 chr18 78077248 + 77123985 77124294 AluYg6 310 + 0 309 90114 309 chain 8404 chr18 78077248 + 77129154 77129248 AluY 311 + 38 132 168822 94 chain 26226 chr18 78077248 + 77129253 77129554 AluY 311 + 1 304 99106 65 0 1 55 0 1 181 chain 18768 chr18 78077248 + 77352668 77352966 THE1D 372 - 0 309 130779 30 1 0 69 2 1 48 17 18 12 0 4 14 12 16 28 0 4 65 chain 57098 chr18 78077248 + 77360980 77361738 MER4E 760 + 2 760 54474 15 0 1 53 0 1 37 2 0 53 22 16 84 0 1 62 0 1 38 1 3 103 1 3 287 chain 7887 chr18 78077248 + 77374930 77375054 Charlie1a 1436 + 532 659 171762 38 18 21 68 chain 15040 chr18 78077248 + 77378024 77378201 AluSx1 309 + 3 180 141203 177 chain 41507 chr18 78077248 + 77395997 77396464 L1PA3long 6157 - 0 467 67272 112 0 1 42 1 0 312 chain 5739 chr18 78077248 + 77462675 77462803 Tigger1 2417 + 2209 2337 187747 43 2 0 20 36 38 27 chain 6543 chr18 78077248 + 77521484 77521560 L1MB7 1623 + 19 95 180898 76 chain 25567 chr18 78077248 + 77594441 77594761 LTR14A 344 - 0 344 101892 35 0 2 62 0 1 8 0 26 44 4 0 35 1 0 131 chain 26024 chr18 78077248 + 77597536 77597876 THE1D-int 1627 - 1280 1627 99929 6 0 4 82 1 2 239 0 2 12 chain 36275 chr18 78077248 + 77685828 77686301 MER41A 554 + 19 498 74528 68 5 6 375 13 18 12 chain 4160 chr18 78077248 + 77713685 77713734 MLT1D 503 + 107 156 205096 49 chain 4753 chr18 78077248 + 77716262 77716387 L1MCa 1829 + 1097 1199 197877 36 54 31 35 chain 72493 chr18 78077248 + 77720165 77721063 LTR5_Hs 974 + 68 974 47268 187 18 0 181 0 1 101 4 5 214 4 20 49 8 11 37 2 1 13 0 6 80 chain 44019 chr18 78077248 + 77752494 77753124 PRIMA4_LTR 623 + 0 623 64181 87 0 1 96 8 4 116 10 2 24 1 0 8 0 12 20 0 2 12 17 0 24 0 4 170 4 8 33 chain 41159 chr18 78077248 + 77760090 77760644 THE1B-int 1605 + 0 582 67700 353 0 1 7 3 5 14 2 0 35 16 41 9 0 2 115 chain 44796 chr18 78077248 + 77771515 77772147 LTR14C 587 + 0 587 63295 12 0 2 221 1 2 22 83 0 195 0 35 98 chain 91441 chr18 78077248 + 77774170 77775337 THE1A-int 1579 - 6 1155 39151 167 0 1 294 17 4 609 10 5 20 1 0 49 chain 253114 chr18 78077248 + 77775378 77778122 L1PA3long 6157 - 15 2760 16073 1563 0 1 1181 chain 56529 chr18 78077248 + 77778122 77778752 L1PA3long 6157 + 2780 3411 54657 512 0 1 118 chain 16197 chr18 78077248 + 77792361 77792556 PRIMA4_LTR 623 + 0 218 137767 178 0 23 17 chain 16951 chr18 78077248 + 77816840 77817189 THE1D 372 + 5 372 135730 43 3 0 20 60 64 34 26 27 17 12 28 134 chain 21063 chr18 78077248 + 77819902 77820161 MER41A 554 - 0 262 123685 123 0 1 85 0 2 51 chain 6312 chr18 78077248 + 77820747 77820977 PABL_A-int 1935 - 20 233 67903 17 10 4 9 1 0 6 36 28 13 1 0 111 1 0 25 chain 67186 chr18 78077248 + 77820993 77821784 L1PA6 6164 - 2 791 49573 250 1 0 111 1 0 428 chain 11197 chr18 78077248 + 77821833 77822241 PABL_A-int 1935 - 265 676 67903 63 1 0 74 14 18 256 chain 30800 chr18 78077248 + 77843039 77843459 MSTA 426 + 1 426 82861 151 1 5 49 3 0 23 9 13 184 chain 18627 chr18 78077248 + 77881286 77881540 AluSp 311 - 44 300 131145 59 6 7 41 0 1 27 1 0 24 8 9 88 chain 5984 chr18 78077248 + 77882842 77882913 MER21B 843 - 762 833 185398 71 chain 21331 chr18 78077248 + 77889538 77889792 L1PA5 6144 + 5790 6044 122750 254 chain 5566 chr18 78077248 + 77905726 77905819 MER66B 489 + 85 179 189424 19 11 13 46 1 0 16 chain 9191 chr18 78077248 + 77909619 77909761 MER30B 195 - 5 142 164602 14 1 0 81 6 1 15 4 5 21 chain 71244 chr18 78077248 + 77922521 77923575 MER11A 1151 - 4 1149 47835 36 0 4 27 1 5 94 0 1 8 1 0 35 1 2 14 0 1 35 18 0 23 48 34 138 9 10 110 1 2 29 0 1 94 14 19 96 0 2 7 0 4 18 10 6 61 0 4 49 0 99 77 chain 4140 chr18 78077248 + 77930707 77930763 L1MB7 1623 - 724 778 205356 29 3 0 9 0 1 15 chain 22605 chr18 78077248 + 77944715 77944996 AluY 311 + 0 299 117568 52 1 0 4 6 23 154 0 2 64 chain 29654 chr18 78077248 + 77975624 77975998 THE1C 375 - 0 375 86050 59 1 0 37 0 1 122 0 1 155 chain 120173 chr18 78077248 + 77976003 77977886 THE1C-int 1605 - 6 1605 30998 305 0 1 108 1 0 4 7 8 526 4 3 128 310 2 8 0 1 53 0 7 25 2 5 6 3 0 11 0 2 61 0 6 61 0 5 4 0 1 98 1 4 141 2 1 14 chain 24714 chr18 78077248 + 77984040 77984338 AluSp 311 - 0 296 106363 48 1 0 159 1 0 89 chain 23245 chr18 78077248 + 77990237 77990591 THE1A 353 - 0 353 114464 139 3 0 5 0 5 6 3 0 64 17 15 6 0 2 17 1 0 36 5 7 4 1 0 47 chain 331719 chr18 78077248 + 77992635 77996373 L1PA4 6152 + 2381 6140 12140 802 1 0 75 0 5 104 0 4 976 0 4 93 5 4 338 2 1 395 0 1 121 0 4 458 0 6 368 chain 71987 chr18 78077248 + 78015206 78016163 LTR13 1007 - 0 984 47478 129 34 38 27 0 1 116 0 3 8 11 13 138 0 4 31 1 13 100 5 6 357 chain 14036 chr20 63025520 + 61148 61309 L1PA4 6152 - 12 177 144432 43 0 4 118 chain 74866 chr20 63025520 + 65748 66955 L1MA2 4263 - 121 1313 46078 17 15 11 10 1 0 48 7 0 91 12 10 12 36 34 90 25 22 5 1 0 5 0 1 87 1 2 35 1 0 47 0 1 29 9 5 14 1 0 19 12 13 180 8 12 18 1 4 153 0 1 8 4 3 205 chain 26228 chr20 63025520 + 76016 76360 L1PREC2 3366 - 1427 1772 99101 173 1 3 82 4 3 84 chain 95675 chr20 63025520 + 78305 79516 L1PA8 5853 - 38 1253 37908 55 1 0 16 1 0 43 0 1 4 29 27 59 2 0 46 1 0 550 0 5 21 0 4 5 0 1 378 chain 50648 chr20 63025520 + 79516 80157 L1P3 4156 + 2433 3083 58377 84 0 2 100 12 13 71 0 4 55 0 1 105 4 5 210 chain 46548 chr20 63025520 + 108428 109036 L1PA8 5853 + 5242 5853 61559 10 0 1 64 0 1 246 1 0 45 2 0 69 2 1 21 10 13 16 9 12 18 3 2 92 chain 556821 chr20 63025520 + 110605 116627 L1PA2 6032 + 0 6025 630 60 0 5 9 1 2 84 6 0 2883 0 1 1668 0 1 93 0 1 1218 chain 85021 chr20 63025520 + 140841 141761 L1PA2 6032 - 1940 2860 41504 920 chain 37213 chr20 63025520 + 141761 142174 L1PA2 6032 + 4100 4513 72965 413 chain 137560 chr20 63025520 + 142175 143674 L1PA2 6032 + 4513 6016 26550 293 0 1 1009 0 3 197 chain 35326 chr20 63025520 + 153412 153859 LTR7 482 + 0 477 75764 101 15 14 115 0 31 216 chain 241624 chr20 63025520 + 153867 156916 HERVH-int 3825 + 0 3825 16690 157 0 1 4 1 0 11 5 9 89 9 11 51 4 3 32 0 1 4 2 1 77 1 120 6 1 0 22 0 151 29 1 0 123 0 1 315 8 0 5 7 0 91 0 26 92 11 1 37 1 0 119 0 1 189 0 1 52 0 291 127 1 0 158 0 1 5 5 4 41 0 1 646 0 1 13 0 210 388 1 0 5 1 0 102 chain 28554 chr20 63025520 + 159046 159481 LTR7 482 + 0 469 90939 86 51 0 15 16 66 27 0 1 6 1 0 29 0 31 162 0 4 42 chain 28052 chr20 63025520 + 171332 171658 LTR17 781 - 455 781 92818 62 1 2 4 1 0 258 chain 246077 chr20 63025520 + 171972 174808 HERV17-int 4347 - 0 2830 16442 398 15 8 386 0 1 4 1 0 409 1 0 115 0 1 30 0 1 73 4 5 820 1 0 579 chain 32045 chr20 63025520 + 176718 177193 L1PA15 4387 - 21 480 80790 10 1 0 28 2 0 13 3 1 43 7 4 50 1 0 10 4 0 22 1 0 54 1 0 26 2 1 172 1 0 18 0 1 6 chain 35053 chr20 63025520 + 184123 184542 L1PA5 6144 - 0 420 76112 189 1 2 229 chain 11598 chr20 63025520 + 184542 184691 L1P1 4361 + 4177 4328 153897 86 3 6 36 1 0 23 chain 7063 chr20 63025520 + 195950 196048 MER57F 435 + 340 435 177009 61 2 0 8 1 0 26 chain 22608 chr20 63025520 + 212399 212664 AluY 311 + 15 276 117550 16 0 1 96 5 0 148 chain 91489 chr20 63025520 + 214691 216256 HSMAR1 1287 + 0 1287 39137 15 0 1 74 306 0 41 0 1 424 1 5 39 0 3 19 17 16 56 3 6 37 2 0 26 5 16 64 9 2 65 1 4 122 0 11 53 0 1 186 chain 43954 chr20 63025520 + 234084 235080 MER4E 760 - 0 760 64259 188 42 113 178 0 2 6 0 3 5 55 50 35 337 29 133 0 1 17 chain 3920 chr20 63025520 + 235213 235270 L1MA5 2750 + 2590 2646 208546 40 4 3 13 chain 3914 chr20 63025520 + 247167 247216 L1MA7 2200 - 253 302 208638 49 chain 2742 chr20 63025520 + 252378 252409 MIRb 242 + 102 133 229578 31 chain 24220 chr20 63025520 + 403663 403947 AluSp 311 + 2 286 109088 284 chain 245836 chr20 63025520 + 448974 452090 HERVK22-int 3844 - 0 3827 16460 56 0 2 24 13 12 80 0 653 201 29 56 512 0 5 164 0 1 39 0 1 497 0 3 162 6 5 186 0 6 200 0 1 4 2 0 120 0 1 99 0 5 27 1 2 30 0 11 370 5 3 289 chain 114031 chr20 63025520 + 559467 560758 L1PA5 6144 - 12 1305 33089 140 5 0 5 1 6 463 6 8 671 chain 4253 chr20 63025520 + 596801 596882 MIR 256 + 105 187 203837 28 21 22 32 chain 4767 chr20 63025520 + 599105 599157 MLT1G 592 + 248 300 197732 52 chain 3354 chr20 63025520 + 615838 615895 MIR 256 - 110 183 217990 8 3 0 34 1 20 11 chain 8690 chr20 63025520 + 668723 668929 Charlie4a 502 + 6 209 167250 12 1 0 15 76 74 102 chain 11717 chr20 63025520 + 674167 674366 MSTB 430 - 13 219 153389 86 16 24 46 18 17 33 chain 24173 chr20 63025520 + 708283 708574 AluSp 311 - 33 310 109356 146 1 0 6 13 0 125 chain 3382 chr20 63025520 + 716054 716143 MLT1C 463 + 345 435 217434 18 35 36 36 chain 4697 chr20 63025520 + 722955 723031 MIRb 242 + 36 111 198561 31 2 0 15 3 4 25 chain 26646 chr20 63025520 + 747071 747437 LTR7 482 + 0 482 97491 23 13 36 27 0 50 75 1 12 10 0 31 41 0 1 176 chain 27144 chr20 63025520 + 751103 751458 MER75 514 - 86 468 95782 79 1 19 90 0 9 185 chain 9440 chr20 63025520 + 762258 762517 LTR19-int 1103 - 848 1007 163363 31 74 14 7 1 0 49 20 0 5 1 0 18 1 0 7 17 0 28 chain 36243 chr20 63025520 + 764907 765373 LTR10A 586 - 22 519 74565 50 0 1 230 1 2 53 5 34 53 1 0 66 0 1 7 chain 18459 chr20 63025520 + 769744 770028 HERVIP10F-int 4088 - 1763 2043 131621 13 1 0 27 0 1 35 16 15 73 12 11 65 1 0 20 1 0 20 chain 57872 chr20 63025520 + 770578 771375 MER4E1 777 - 0 777 54050 8 0 2 112 1 0 4 1 2 98 6 14 185 0 1 4 1 0 12 42 0 16 1 11 189 0 1 84 9 10 24 chain 3967 chr20 63025520 + 771555 771631 MER84 505 - 425 505 207881 30 21 25 25 chain 13042 chr20 63025520 + 771688 771886 MER84 505 + 0 193 148070 14 4 3 46 14 10 120 chain 17782 chr20 63025520 + 771893 772100 MER4E1 777 + 246 453 133471 207 chain 37466 chr20 63025520 + 772440 772942 LTR10F 562 + 0 554 72868 158 15 8 19 7 46 10 0 24 8 4 0 281 chain 171766 chr20 63025520 + 775149 778406 HERVIP10F-int 4088 + 218 3241 21848 13 30 20 15 3 0 7 3 1 13 1 0 16 128 85 25 26 15 7 1 0 7 18 16 16 4 2 5 1 0 9 37 29 18 1 0 31 1 0 28 26 22 10 1 0 10 1 0 20 1 0 15 1 0 7 1 0 28 2 0 8 1 0 44 36 7 33 1 0 7 1 0 59 1 0 5 1 0 26 2 1 10 1 0 20 1 0 8 1 0 5 14 6 4 1 0 17 13 9 7 1 0 30 1 0 41 2 0 11 1 0 8 1 0 13 21 16 24 7 4 23 1 0 14 1 0 41 1 0 127 56 44 12 1 0 12 7 5 24 1 0 29 1 0 35 48 46 6 1 0 62 1 0 32 20 16 406 10 9 11 1 0 47 0 9 9 1 0 84 1 0 73 1 0 16 2 1 134 1 0 527 25 21 58 168 131 7 1 0 18 8 4 17 chain 44675 chr20 63025520 + 781031 781588 LTR10F 562 + 0 562 63406 232 0 3 13 3 11 7 4 0 8 2 0 288 chain 57325 chr20 63025520 + 783954 785074 MER4E1 777 - 0 776 54325 232 13 6 16 339 1 175 1 0 167 24 25 31 0 1 122 chain 27081 chr20 63025520 + 874633 874960 LTR17 781 - 455 781 95994 17 10 0 181 0 9 119 chain 22361 chr20 63025520 + 880308 880574 HERVH-int 3825 + 2715 2984 118669 261 0 3 5 chain 3487 chr20 63025520 + 900887 900969 MLT1K 546 - 62 137 215576 5 3 0 26 17 13 31 chain 63521 chr20 63025520 + 908145 908921 MER4E1 777 - 7 777 51241 229 5 0 194 1 0 291 0 1 29 2 1 25 chain 54845 chr20 63025520 + 917916 918554 L1PA7 6471 - 6 641 55802 6 3 0 629 chain 3432 chr20 63025520 + 995873 995914 MLT1J 494 - 353 394 216538 41 chain 4432 chr20 63025520 + 1014490 1014751 MLT1H2 457 + 68 275 201567 51 194 140 16 chain 6531 chr20 63025520 + 1042550 1042674 MADE1 96 + 1 92 180999 41 36 3 47 chain 3262 chr20 63025520 + 1079746 1079784 L1MC1 2226 + 2160 2198 219750 38 chain 3861 chr20 63025520 + 1108817 1108860 L1MC1 2226 - 179 222 209438 43 chain 18146 chr20 63025520 + 1120190 1120400 AluY 311 + 84 295 132468 48 0 1 162 chain 58973 chr20 63025520 + 1122914 1123571 L1PA4 6152 - 0 657 53413 657 chain 31677 chr20 63025520 + 1137543 1137981 MLT2A1 477 - 2 477 81362 7 0 4 6 1 0 27 18 46 177 1 0 36 0 4 26 1 2 52 0 2 86 chain 68286 chr20 63025520 + 1137982 1138837 HERVL-int 5654 - 1 857 49128 69 0 1 179 3 4 33 0 3 137 4 2 26 8 1 243 0 1 13 5 6 31 0 3 104 chain 44421 chr20 63025520 + 1182823 1183369 MER41A 554 + 0 554 63671 119 0 7 41 1 2 385 chain 8234 chr20 63025520 + 1189466 1189744 LTR50 688 + 392 668 169758 31 76 75 26 77 76 68 chain 29968 chr20 63025520 + 1191444 1191912 L1PA8 5853 - 0 451 84919 93 1 0 19 2 1 51 20 19 9 1 0 53 2 0 44 1 0 96 0 15 21 26 1 29 chain 6729 chr20 63025520 + 1196649 1197396 LTR13A 966 + 0 742 48054 696 18 13 33 chain 528823 chr20 63025520 + 1197425 1204275 L1PA5 6144 + 3 6144 4322 115 7 20 21 0 12 558 1 0 4 1 0 78 0 17 342 9 0 2017 0 6 489 1 0 816 0 3 100 435 0 607 0 2 6 2 0 294 0 2 298 0 1 204 315 0 117 2 1 11 chain 2018 chr20 63025520 + 1204277 1204501 LTR13A 966 + 742 966 48054 224 chain 43790 chr20 63025520 + 1230501 1231353 L1PA5 6144 - 0 501 64466 369 351 0 132 chain 22692 chr20 63025520 + 1230899 1231171 L1PA5 6144 - 0 318 117115 145 1 47 126 chain 15928 chr20 63025520 + 1315811 1316052 L1PB2 3958 + 3602 3838 138583 15 2 1 63 1 0 62 8 6 22 5 4 63 chain 27220 chr20 63025520 + 1324390 1324761 MER51B 395 - 0 395 95523 150 1 0 30 0 1 4 1 0 98 6 12 34 7 26 40 chain 233588 chr20 63025520 + 1328478 1332789 L1MA3 4352 - 8 4062 17109 13 3 0 3 1 0 14 8 7 19 1 0 6 1 0 22 2 0 25 4 0 61 0 1 60 3 0 7 40 14 36 0 1 22 9 8 126 1 0 160 18 19 156 0 2 70 3 1 110 2 0 199 0 10 113 7 5 6 0 3 99 12 23 40 0 4 154 0 3 128 0 2 80 11 6 12 18 23 101 1 10 47 12 11 24 0 1 5 1 0 12 627 378 106 0 1 124 1 0 122 1 0 19 0 13 56 19 12 35 0 1 20 3 7 16 3 1 15 10 12 20 33 40 36 0 8 21 0 4 38 1 5 39 1 0 30 3 2 33 79 21 18 1 0 88 1 0 43 1 0 14 11 9 53 1 4 22 3 1 42 13 0 95 13 20 105 0 3 50 0 27 74 0 6 45 3 0 16 chain 48769 chr20 63025520 + 1345039 1345617 LTR10C 591 + 0 591 59897 15 0 1 166 0 4 12 1 0 103 1 5 230 0 5 50 chain 23185 chr20 63025520 + 1347622 1347908 AluSc8 310 + 10 297 114752 80 0 1 41 0 3 149 3 0 13 chain 6010 chr20 63025520 + 1385033 1385138 MLT1A0 366 - 254 355 185139 51 14 13 22 3 0 15 chain 5672 chr20 63025520 + 1389545 1389662 L1MB3 1562 - 7 124 188371 22 1 2 7 1 0 16 2 1 42 13 14 13 chain 29757 chr20 63025520 + 1414553 1415048 MER1A 529 + 35 529 85624 22 2 3 9 0 1 10 55 60 25 5 0 262 5 4 23 19 17 58 chain 24384 chr20 63025520 + 1415644 1415986 MER66C 541 + 14 400 108177 52 5 10 15 0 1 131 0 33 84 0 4 33 6 7 16 chain 10941 chr20 63025520 + 1463510 1463740 L1MA4A 3247 - 71 292 156440 15 51 45 9 1 0 27 7 8 101 3 0 16 chain 4299 chr20 63025520 + 1470520 1470586 MER45A 178 - 52 129 203240 19 7 18 40 chain 34554 chr20 63025520 + 1481111 1481611 LTR10D 510 + 0 510 76822 82 3 5 13 2 0 130 1 0 4 0 1 4 22 25 7 2 0 102 0 10 36 2 0 44 0 1 46 chain 5773 chr20 63025520 + 1490893 1490956 L1PA4 6152 + 6088 6151 187409 63 chain 4058 chr20 63025520 + 1500853 1500905 MIR3 191 + 74 125 206509 44 1 0 7 chain 467899 chr20 63025520 + 1521290 1526972 L1PA7 6471 - 6 5717 8115 6 2 0 282 0 1 196 0 1 352 4 0 10 0 3 595 1 0 62 1 0 130 0 5 18 2 0 225 0 1 4 1 0 234 0 6 73 0 1 47 0 2 171 2 0 157 0 1 250 13 17 49 6 13 63 1 0 4 1 2 94 0 4 50 0 1 55 0 1 32 0 1 146 0 4 449 12 6 385 0 2 32 0 1 179 0 1 201 0 1 35 1 0 487 0 1 562 chain 6538 chr20 63025520 + 1542618 1542754 L1MC3 1789 - 405 525 180937 7 1 0 29 0 2 12 32 14 6 0 1 49 chain 19547 chr20 63025520 + 1572486 1572811 THE1D 372 + 8 340 128527 87 15 16 33 0 2 14 6 7 13 9 11 19 13 14 116 chain 409151 chr20 63025520 + 1619262 1624704 L1PA8 5853 - 0 5481 9828 55 6 7 31 1 0 19 2 1 40 1 0 11 6 5 5 1 0 71 2 0 44 1 0 555 2 0 236 0 1 432 2 0 70 15 31 60 1 0 1188 1 0 4 0 5 49 0 4 122 0 10 628 0 15 17 0 9 368 8 7 105 0 1 508 3 4 148 0 2 5 2 0 209 36 36 72 7 9 12 56 63 13 62 44 150 chain 6305 chr20 63025520 + 1637500 1637589 MER85 139 - 0 97 182750 29 7 15 53 chain 43328 chr20 63025520 + 1652164 1652673 MER9a3 513 - 0 513 65002 58 5 9 5 1 0 368 0 1 72 chain 17901 chr20 63025520 + 1656320 1656540 MER75B 242 + 20 235 133098 196 3 0 8 2 0 11 chain 110670 chr20 63025520 + 1672229 1673558 L1PA7 6471 + 5138 6469 34040 26 0 1 262 0 1 189 18 18 9 0 1 359 0 2 315 1 0 138 2 0 10 chain 26446 chr20 63025520 + 1678752 1679058 AluSp 311 - 5 311 98248 306 chain 207715 chr20 63025520 + 1710103 1713783 HERVH-int 3825 - 7 3825 18660 176 425 651 323 0 1 116 3 4 129 5 4 5 0 1 104 0 13 9 21 9 27 1 0 151 4 9 293 1 0 78 3 30 214 399 40 181 46 16 454 0 265 30 23 0 8 1 27 4 0 1 29 7 6 30 15 16 20 26 25 319 chain 256140 chr20 63025520 + 1722925 1725679 L1PA2 6032 + 3278 6032 15926 2754 chain 26425 chr20 63025520 + 1772348 1772706 THE1B 368 - 1 368 98325 74 1 0 99 6 8 16 1 0 115 0 15 16 8 2 22 chain 9127 chr20 63025520 + 1772707 1772817 Tigger4b 360 + 172 282 164934 110 chain 3257 chr20 63025520 + 1782076 1782115 MLT1H 522 + 97 137 219821 32 0 1 7 chain 34975 chr20 63025520 + 1944637 1945244 MER41B 635 - 0 611 76222 69 12 17 33 46 65 153 2 1 111 22 14 43 46 1 10 0 34 60 chain 21383 chr20 63025520 + 1993654 1993933 AluSz6 309 + 26 300 122575 98 5 0 176 chain 3154 chr20 63025520 + 2006549 2006588 MER2 342 + 152 191 221859 39 chain 9820 chr20 63025520 + 2037964 2038104 L1PA11 4918 + 4353 4488 161494 40 2 1 13 2 0 67 2 0 14 chain 49993 chr20 63025520 + 2042300 2042914 L1PA8 5853 + 5246 5853 59018 316 1 0 46 2 0 74 1 0 8 2 1 49 2 1 19 1 0 93 chain 16290 chr20 63025520 + 2099315 2099653 Tigger3a 397 + 45 387 137506 59 11 14 15 16 5 22 0 10 71 28 29 48 14 21 27 12 6 15 chain 13417 chr20 63025520 + 2112134 2112379 Tigger3 1187 - 268 555 146646 121 1 0 9 15 60 32 2 1 25 27 26 13 chain 43124 chr20 63025520 + 2150615 2151105 L1PA5 6144 - 0 490 65265 125 2 0 103 0 2 260 chain 11729 chr20 63025520 + 2156189 2156438 L1PB1 5432 - 8 237 153352 6 1 0 14 1 0 13 2 1 20 1 0 24 2 0 5 38 28 17 1 0 15 1 0 44 1 0 16 2 1 25 chain 8067 chr20 63025520 + 2194647 2194936 L1MC1 2226 - 45 291 170660 29 1 0 17 53 32 20 50 36 52 48 41 19 chain 7166 chr20 63025520 + 2216131 2216323 MIR 256 + 19 215 176293 38 14 13 39 71 76 30 chain 2994 chr20 63025520 + 2224145 2224179 MER68B 564 + 4 38 225140 34 chain 2880 chr20 63025520 + 2227456 2227488 MER68-int 777 - 355 387 227375 32 chain 36435 chr20 63025520 + 2237556 2238033 LTR15 485 + 0 478 74323 103 0 1 22 4 0 23 0 2 124 0 4 158 1 0 5 2 0 14 0 1 21 chain 521484 chr20 63025520 + 2245093 2251252 L1PA6 6164 + 0 6162 5010 237 0 2 23 2 1 258 0 2 44 1 0 23 0 1 201 17 0 50 5 6 477 15 22 242 0 3 368 3 0 5 0 3 366 17 6 850 0 1 76 0 1 140 0 8 278 0 1 209 0 2 597 4 2 483 1 4 122 1 0 204 0 4 840 chain 8742 chr20 63025520 + 2253720 2253841 MER85 139 - 2 133 166961 16 4 3 8 0 11 93 chain 18607 chr20 63025520 + 2257575 2257933 L1PB3 3668 - 55 383 131202 14 10 7 10 1 0 13 7 3 37 3 1 25 1 0 8 38 21 83 7 6 95 1 0 5 chain 3006 chr20 63025520 + 2261813 2261847 MER103C 291 - 132 166 224939 34 chain 9150 chr20 63025520 + 2303726 2303930 L1PB1 5432 - 5 189 164809 5 2 0 18 1 0 9 0 3 22 1 0 21 20 17 5 2 0 30 14 1 16 4 3 34 chain 23890 chr20 63025520 + 2307834 2308129 AluY 311 + 0 289 110955 126 5 0 48 4 3 112 chain 87845 chr20 63025520 + 2339655 2340958 L1PA15 4387 - 31 1328 40427 24 10 5 15 2 0 38 32 29 28 1 0 10 4 0 18 0 3 55 1 0 27 2 1 49 9 10 33 2 1 76 5 4 38 3 1 64 3 0 14 2 0 210 1 17 303 1 0 80 14 16 36 17 16 76 chain 3422 chr20 63025520 + 2345525 2345571 L1MD2 1676 + 1605 1650 216722 36 1 0 9 chain 23055 chr20 63025520 + 2347444 2347733 AluSq2 311 + 0 297 115378 22 1 9 266 chain 7988 chr20 63025520 + 2403689 2403783 Tigger1 2417 + 1914 2008 171128 94 chain 5951 chr20 63025520 + 2409116 2409188 MER5A 189 - 113 185 185667 72 chain 4741 chr20 63025520 + 2434453 2434531 LTR52 417 + 257 341 198003 52 0 7 8 1 2 10 2 0 5 chain 11628 chr20 63025520 + 2453817 2454056 MER44A 345 + 0 271 153785 20 46 47 23 0 3 8 0 14 53 4 16 61 7 9 17 chain 21404 chr20 63025520 + 2467169 2467427 AluSp 311 + 39 297 122492 258 chain 29079 chr20 63025520 + 2479831 2480139 AluYa5 310 + 2 310 88647 308 chain 537545 chr20 63025520 + 2481476 2487593 L1PA4 6152 + 7 6143 3226 220 0 1 300 4 0 536 1 0 363 0 1 958 0 4 787 1 0 285 0 11 230 1 0 415 2 1 363 0 5 184 1 8 529 2 0 935 chain 23329 chr20 63025520 + 2499422 2499786 THE1D 372 + 0 372 114039 4 1 0 115 9 13 30 0 1 17 40 44 148 chain 6757 chr20 63025520 + 2541621 2541714 MER3 215 + 50 138 179268 81 5 0 7 chain 4059 chr20 63025520 + 2560919 2560965 MADE1 96 - 49 95 206500 46 chain 3665 chr20 63025520 + 2581829 2581868 MER58A 224 + 9 48 212492 39 chain 12823 chr20 63025520 + 2598846 2598997 L1MA4 2864 - 194 345 148961 151 chain 30394 chr20 63025520 + 2607441 2607866 LTR3B 427 - 4 421 83693 49 0 8 7 9 1 23 1 7 29 16 0 178 9 11 104 chain 16392 chr20 63025520 + 2609127 2609452 THE1C 375 + 32 360 137231 32 59 60 60 1 2 23 0 3 5 3 0 11 4 6 13 10 9 104 chain 8926 chr20 63025520 + 2628806 2628936 Tigger4a 237 - 0 128 166004 46 0 7 6 8 0 37 1 0 32 chain 7549 chr20 63025520 + 2628942 2629042 L1MA3 4352 + 3353 3452 173877 25 1 0 74 chain 12481 chr20 63025520 + 2650572 2650778 MER30 238 - 3 237 150334 30 1 0 84 2 0 8 32 45 33 0 18 16 chain 5521 chr20 63025520 + 2660160 2660232 MLT1B 390 - 38 109 189827 54 1 0 17 chain 83425 chr20 63025520 + 2663293 2664231 L1PA5 6144 - 1368 2311 42073 427 0 2 355 0 2 115 0 1 41 chain 121526 chr20 63025520 + 2664231 2665601 L1PA5 6144 + 4768 6144 30527 1043 2 1 187 0 7 138 chain 8507 chr20 63025520 + 2725443 2725664 MER33 330 - 39 275 168256 34 30 44 27 46 45 12 1 0 6 0 4 49 1 0 15 chain 2429 chr20 63025520 + 2760859 2760904 L1MC 810 + 700 744 233962 27 7 6 11 chain 5690 chr20 63025520 + 2767430 2767502 L1M4c 1769 - 825 898 188201 52 0 1 20 chain 48773 chr20 63025520 + 2789698 2790598 LTR14C 587 - 0 587 59895 313 0 1 13 315 0 139 0 1 120 chain 4722 chr20 63025520 + 2791682 2791758 L1PB3 3668 - 104 186 198258 35 0 8 18 5 3 18 chain 75847 chr20 63025520 + 2803737 2804576 SVA_D 2077 + 60 898 45574 147 1 0 691 chain 102972 chr20 63025520 + 2804620 2806404 SVA_E 1901 + 669 1901 35997 32 3 83 28 1 0 5 1 0 110 3 0 45 626 0 915 1 0 14 chain 15179 chr20 63025520 + 2804890 2805278 SVA_E 1901 + 1015 1255 91992 80 1 0 25 49 0 46 106 7 48 0 1 33 chain 4540 chr20 63025520 + 2804996 2805045 SVA_E 1901 + 1247 1296 151667 49 chain 5429 chr20 63025520 + 2805091 2805197 SVA_E 1901 + 942 1047 121716 73 1 0 32 chain 24525 chr20 63025520 + 2834064 2835606 Tigger1 2417 - 584 1102 107413 50 2 7 79 3 7 4 1 0 99 1184 152 120 chain 5911 chr20 63025520 + 2863814 2863901 Tigger4a 237 + 149 237 186083 29 5 6 53 chain 5520 chr20 63025520 + 2895900 2895970 L1MB3 1562 - 291 360 189834 43 1 0 26 chain 3212 chr20 63025520 + 2921351 2921470 MER58B 340 + 140 273 220712 25 67 81 27 chain 8102 chr20 63025520 + 2923488 2923613 MER44B 551 - 31 181 170479 37 4 26 56 6 9 22 chain 25099 chr20 63025520 + 2931013 2931302 AluY 311 + 11 296 104293 115 4 0 170 chain 158653 chr20 63025520 + 2998886 3000753 SVA_D 2077 - 15 2059 23511 580 0 98 144 49 0 10 1 0 18 0 4 123 0 51 82 0 36 13 2 0 65 40 0 74 0 40 74 0 40 592 chain 4205 chr20 63025520 + 2999610 2999659 SVA_D 2077 - 964 1013 80694 49 chain 4012 chr20 63025520 + 3028854 3028900 MER58A 224 + 37 83 207211 46 chain 28913 chr20 63025520 + 3037878 3038185 AluYa5 310 + 4 310 89402 128 1 0 178 chain 49883 chr20 63025520 + 3043952 3044491 SVA_B 1603 + 1057 1596 59099 539 chain 37857 chr20 63025520 + 3054919 3055453 MER4A 717 - 131 694 72335 33 10 8 5 0 2 48 11 4 107 1 0 168 0 30 53 0 7 98 chain 147307 chr20 63025520 + 3104883 3107170 SVA_A 1864 + 19 1864 24994 117 0 96 234 37 0 111 1 3 33 3 0 229 153 0 29 40 0 14 1 0 65 2 0 111 2 0 37 78 0 37 2 0 9 1 0 27 2 0 67 3 0 44 2 0 45 219 0 81 0 2 56 0 3 395 chain 2477 chr20 63025520 + 3105234 3105271 SVA_A 1864 + 990 1027 150687 37 chain 4127 chr20 63025520 + 3105683 3105762 SVA_A 1864 + 874 952 73843 10 2 1 67 chain 2512 chr20 63025520 + 3106102 3106139 SVA_A 1864 + 803 840 59475 37 chain 2787 chr20 63025520 + 3106141 3106178 SVA_A 1864 + 840 877 141818 37 chain 12291 chr20 63025520 + 3106419 3106600 SVA_A 1864 + 1032 1206 59475 26 3 0 74 3 0 11 1 0 63 chain 5130 chr20 63025520 + 3112260 3112324 L1MC2 1988 + 1722 1788 193778 57 0 2 7 chain 22379 chr20 63025520 + 3115223 3115525 AluSq 315 + 0 299 118587 48 8 9 76 0 2 64 7 1 99 chain 20038 chr20 63025520 + 3216976 3217227 AluY 311 + 36 275 127014 61 11 1 33 2 0 144 chain 28351 chr20 63025520 + 3240703 3241002 AluYb8 318 + 0 299 91760 299 chain 23943 chr20 63025520 + 3247501 3247788 AluSp 311 - 15 302 110658 287 chain 7426 chr20 63025520 + 3269847 3269931 L1PA4 6152 + 6057 6141 174604 84 chain 23273 chr20 63025520 + 3271983 3272278 AluSc 308 - 4 298 114330 150 18 18 5 1 0 121 chain 7702 chr20 63025520 + 3326502 3326589 AluSc 308 + 201 288 172923 87 chain 8120 chr20 63025520 + 3340682 3340781 U6 107 + 0 99 170377 99 chain 6086 chr20 63025520 + 3345920 3345995 Tigger1 2417 - 330 405 184537 75 chain 28896 chr20 63025520 + 3375602 3375917 AluYg6 310 - 0 310 89468 179 5 0 131 chain 23301 chr20 63025520 + 3376501 3376862 THE1B 368 + 0 368 114193 120 2 1 51 5 4 22 35 45 85 1 0 40 chain 5705 chr20 63025520 + 3395234 3395298 MSTA 426 - 40 104 188057 64 chain 13163 chr20 63025520 + 3403058 3403309 L1PB4 2604 + 2292 2535 147604 24 4 1 26 62 57 135 chain 3362 chr20 63025520 + 3408800 3408837 MER41D 557 - 420 457 217843 37 chain 122462 chr20 63025520 + 3421100 3422526 SVA_D 2077 - 0 1730 30232 136 0 20 532 0 1 77 22 49 4 0 1 149 0 87 34 0 84 102 0 80 341 1 5 28 chain 35359 chr20 63025520 + 3458888 3459342 L1PA7 6471 + 6002 6470 75719 57 16 5 187 0 24 28 0 1 166 chain 166409 chr20 63025520 + 3476731 3478560 L1PA3long 6157 - 2934 4754 22435 398 1 0 128 1 0 121 7 0 1173 chain 266523 chr20 63025520 + 3478560 3481492 L1PA3long 6157 + 3221 6156 15365 45 0 4 2030 1 2 365 2 0 489 chain 5551 chr20 63025520 + 3487656 3487750 MADE1 96 + 1 96 189554 33 20 21 41 chain 24413 chr20 63025520 + 3487771 3488069 AluSg7 307 + 0 296 108016 123 1 0 9 3 0 124 0 2 38 chain 4064 chr20 63025520 + 3489106 3489153 MER58A 224 - 133 180 206424 47 chain 171936 chr20 63025520 + 3492764 3494682 L1PA4 6152 - 9 1943 21821 1578 0 15 20 0 1 320 chain 10122 chr20 63025520 + 3494682 3494798 L1P1 4361 - 4241 4357 158378 116 chain 36405 chr20 63025520 + 3497385 3497802 L1PA7 6471 - 251 671 74364 361 0 3 56 chain 474945 chr20 63025520 + 3502991 3508714 L1PA7 6471 + 729 6458 7883 484 0 4 551 1 0 558 0 1 143 0 9 150 9 3 467 0 5 51 6 10 271 0 3 82 0 1 27 0 4 203 1 0 4 0 1 68 1 0 327 4 3 48 0 1 227 6 7 226 40 0 6 4 1 99 0 3 41 3 8 265 1 7 494 4 10 19 2 0 77 0 2 198 6 9 260 0 1 44 0 2 97 1 0 147 chain 33873 chr20 63025520 + 3518160 3518543 L1PA5 6144 - 0 383 77822 383 chain 14716 chr20 63025520 + 3518601 3518764 L1PA2 6032 - 0 161 142215 6 2 0 155 chain 29012 chr20 63025520 + 3535637 3535949 AluYf4 310 - 0 310 88932 192 2 0 118 chain 24560 chr20 63025520 + 3540811 3541203 L1MA4 2864 - 178 568 107192 15 4 1 48 6 8 14 0 2 61 1 0 35 6 5 14 2 0 36 0 4 105 10 7 35 chain 8413 chr20 63025520 + 3551853 3551949 MER85 139 + 0 96 168773 96 chain 9342 chr20 63025520 + 3585796 3585985 L1PA11 4918 + 4408 4578 163844 67 2 0 11 4 3 19 4 0 9 31 22 15 1 0 13 2 0 11 chain 24272 chr20 63025520 + 3596411 3596696 L1PA4 6152 + 5862 6152 108837 279 0 5 6 chain 15527 chr20 63025520 + 3601524 3601745 MER30 238 + 0 237 139807 70 0 1 24 0 20 34 2 0 4 6 0 43 0 3 38 chain 15640 chr20 63025520 + 3615616 3615998 L1PB1 5432 + 5064 5422 139467 39 54 56 9 2 0 47 11 10 10 2 1 45 1 0 15 1 0 4 2 0 13 26 15 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 14 1 0 4 chain 34958 chr20 63025520 + 3618776 3619238 L1PA8 5853 - 0 457 76253 89 7 6 17 2 1 61 2 1 73 2 0 41 1 0 42 0 1 125 chain 4566 chr20 63025520 + 3626754 3626809 MIR 256 - 104 159 200041 55 chain 29419 chr20 63025520 + 3645836 3646206 MER41A 554 - 0 376 86995 81 0 5 123 0 1 166 chain 25562 chr20 63025520 + 3770358 3770649 AluY 311 + 4 296 101920 122 0 1 169 chain 72343 chr20 63025520 + 3774248 3775031 L1PA3long 6157 - 0 784 47320 234 0 1 549 chain 23548 chr20 63025520 + 3775726 3776029 AluSx4 309 + 0 304 112867 109 1 0 125 1 3 67 chain 25138 chr20 63025520 + 3810873 3811164 AluSp 311 - 9 301 104081 87 0 1 204 chain 24913 chr20 63025520 + 3816267 3816568 AluSp 311 - 10 311 105254 19 0 2 28 6 4 248 chain 8935 chr20 63025520 + 3854194 3854428 MLT1A0 366 + 74 313 165953 42 1 3 16 2 3 15 90 92 68 chain 18229 chr20 63025520 + 3901717 3901921 L1PA5 6144 - 18 222 132259 204 chain 21850 chr20 63025520 + 3917485 3917783 AluSc 308 - 12 308 120817 142 19 18 5 1 0 131 chain 24612 chr20 63025520 + 3989204 3989491 AluSg7 307 - 19 307 106928 174 0 1 113 chain 26255 chr20 63025520 + 3996439 3996743 AluY 311 + 0 300 98998 132 4 0 168 chain 19695 chr20 63025520 + 3999772 4000000 AluSp 311 - 5 233 128119 228 chain 25739 chr20 63025520 + 4001597 4001902 AluSp 311 - 8 311 101122 183 2 0 120 chain 170312 chr20 63025520 + 4012531 4014745 SVA_E 1901 + 8 1901 22013 137 2 0 338 40 0 334 42 0 109 228 0 83 3 0 24 0 1 6 1 2 637 27 19 203 chain 2170 chr20 63025520 + 4013383 4013424 SVA_E 1901 + 817 989 74282 23 0 119 8 0 12 10 chain 10744 chr20 63025520 + 4013533 4013736 SVA_E 1901 + 1098 1301 74282 203 chain 2464 chr20 63025520 + 4013736 4013761 SVA_E 1901 + 827 852 188875 25 chain 41790 chr20 63025520 + 4014747 4015276 LTR5_Hs 974 - 94 639 66915 6 1 0 5 0 1 91 0 19 26 0 3 187 3 4 122 7 0 81 chain 24654 chr20 63025520 + 4015281 4015629 SVA_A 1864 - 119 448 106700 41 1 0 25 19 1 132 0 1 4 12 11 114 chain 27123 chr20 63025520 + 4030404 4030755 THE1A 353 - 0 353 95857 58 0 2 77 14 15 91 1 0 110 chain 7066 chr20 63025520 + 4033821 4034122 L1MA6 2487 + 2153 2393 176970 52 70 57 15 0 2 12 106 54 7 0 5 22 3 0 14 chain 3439 chr20 63025520 + 4047316 4047373 LTR33A_ 513 - 89 155 216427 17 10 19 30 chain 5969 chr20 63025520 + 4048780 4048991 LTR16C 481 - 137 341 185524 41 71 70 30 39 36 22 3 0 5 chain 5198 chr20 63025520 + 4050536 4050609 MLT1H 522 + 54 128 193045 44 3 4 26 chain 18615 chr20 63025520 + 4067861 4068110 MER1B 344 - 5 252 131174 62 2 0 6 1 5 48 4 0 126 chain 22577 chr20 63025520 + 4113226 4113513 AluSx3 311 + 10 299 117687 121 1 2 148 0 1 17 chain 119144 chr20 63025520 + 4119097 4120751 L1PA5 6144 - 3 1335 31361 840 0 4 290 326 0 198 chain 30000 chr20 63025520 + 4120236 4120553 AluYb8 318 - 1 318 84812 317 chain 16123 chr20 63025520 + 4124357 4124579 MER39 703 + 263 490 137986 46 12 17 164 chain 24897 chr20 63025520 + 4159335 4159629 AluSp 311 - 17 311 105364 294 chain 25752 chr20 63025520 + 4176641 4176948 AluSp 311 + 0 311 101074 70 0 5 35 1 0 201 chain 6805 chr20 63025520 + 4179762 4179928 MER66B 489 - 49 217 178917 34 72 75 43 1 0 16 chain 23277 chr20 63025520 + 4180873 4181167 AluSq2 311 + 11 302 114313 114 3 0 177 chain 7998 chr20 63025520 + 4182750 4182845 MER70A 477 + 0 96 171080 69 0 1 26 chain 41286 chr20 63025520 + 4199322 4200260 MER41B 635 + 0 635 67549 126 19 20 104 0 22 8 22 0 166 23 22 37 0 2 4 304 0 115 1 0 9 chain 79910 chr20 63025520 + 4244798 4245850 MER11C 1089 - 20 1089 43632 4 0 1 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 107 49 49 148 1 0 65 0 4 62 0 9 246 chain 18760 chr20 63025520 + 4254261 4254520 THE1C 375 - 0 275 130804 26 1 0 135 5 11 12 17 28 63 chain 557493 chr20 63025520 + 4264384 4270518 L1PA3long 6157 - 0 6151 559 28 0 1 125 0 11 3597 0 1 9 0 2 1027 3 0 188 1 4 283 0 2 873 chain 232662 chr20 63025520 + 4272862 4275440 L1PA4 6152 - 9 2589 17162 104 0 1 486 0 2 249 1 0 1738 chain 43982 chr20 63025520 + 4290980 4291527 MER41A 554 - 7 554 64225 547 chain 45764 chr20 63025520 + 4292512 4293074 LTR19B 566 + 0 566 62262 286 1 4 223 12 13 40 chain 5699 chr20 63025520 + 4311545 4311613 MSTC 436 - 348 416 188118 68 chain 24202 chr20 63025520 + 4319173 4319478 L1PA7 6471 - 2 307 109199 34 9 0 8 1 10 253 chain 37308 chr20 63025520 + 4338167 4338684 MLT2A2 560 + 5 560 73073 133 2 1 44 2 0 125 0 32 61 3 14 40 9 7 98 chain 37834 chr20 63025520 + 4342004 4342515 MLT2A2 560 + 2 524 72364 67 0 2 65 9 5 54 13 14 192 1 12 75 0 1 35 chain 181341 chr20 63025520 + 4367179 4369138 L1PA2 6032 - 0 1960 20867 733 0 1 1226 chain 83559 chr20 63025520 + 4374274 4375253 LTR13 1007 - 0 1007 42093 290 1 9 262 0 20 40 4 5 77 1 0 304 chain 30037 chr20 63025520 + 4396814 4397248 L1PA7 6471 + 6033 6470 84693 179 2 1 46 35 1 63 10 11 16 1 36 70 0 2 12 chain 184276 chr20 63025520 + 4399150 4401301 L1PA7 6471 - 12 2193 20561 63 0 1 695 0 2 70 1 6 274 0 8 7 1 2 56 5 11 655 0 2 78 0 4 153 0 1 93 chain 9144 chr20 63025520 + 4419783 4420077 MLT1A 405 + 33 359 164837 47 48 23 19 85 123 27 17 36 51 chain 2980 chr20 63025520 + 4433452 4433485 MADE1 96 - 5 38 225447 33 chain 24112 chr20 63025520 + 4442379 4442664 AluSp 311 - 25 311 109685 217 0 1 68 chain 59857 chr20 63025520 + 4456352 4457104 MER4E 760 - 0 760 52895 35 0 3 84 5 7 199 1 0 26 0 1 42 0 2 23 8 7 201 0 1 105 0 1 23 chain 519711 chr20 63025520 + 4476457 4482608 L1PA6 6164 - 2 6164 5186 165 0 1 169 0 1 511 1 0 455 2 0 1065 0 2 371 0 2 228 0 2 856 7 0 770 0 1 228 1 3 88 0 1 676 0 2 45 0 2 8 2 1 106 9 8 16 0 8 73 6 5 293 chain 4759 chr20 63025520 + 4515764 4515834 L1MB7 1623 - 528 597 197815 12 0 1 34 1 0 16 1 0 6 chain 15831 chr20 63025520 + 4526399 4526612 MER30 238 - 7 238 138850 103 9 27 101 chain 56088 chr20 63025520 + 4579589 4580291 L1PA8 5853 - 0 700 55075 89 5 4 19 2 1 50 1 0 11 1 0 71 2 0 44 1 0 247 0 5 159 chain 26233 chr20 63025520 + 4596944 4597317 THE1C 375 - 0 372 99085 18 8 7 21 10 9 135 1 0 7 0 1 105 0 1 68 chain 538230 chr20 63025520 + 4599669 4606421 L1PA7 6471 - 1 6468 3117 153 4 6 179 5 4 181 1 14 188 1 0 128 0 3 696 5 25 411 5 1 43 0 1 601 1 0 253 0 5 25 0 4 63 3 2 244 0 1 240 0 7 355 23 0 105 0 1 136 318 0 147 0 1 175 0 1 265 1 0 1157 0 1 243 1 2 77 7 8 254 0 3 58 chain 19170 chr20 63025520 + 4624978 4625220 MSTA-int 1630 - 0 243 129616 115 1 0 57 0 1 57 0 1 12 chain 7928 chr20 63025520 + 4625220 4625316 THE1B 368 - 255 366 169634 54 0 15 42 chain 21632 chr20 63025520 + 4628529 4629073 L1MB1 2102 + 1382 1923 121648 37 25 7 58 0 4 26 21 15 64 16 49 8 39 0 69 103 132 24 1 0 17 5 0 31 chain 18792 chr20 63025520 + 4636650 4636865 L1PA5 6144 - 4 225 130703 107 0 6 108 chain 30588 chr20 63025520 + 4640421 4640844 LTR7B 505 + 0 497 83222 105 0 10 60 0 38 12 3 27 26 1 3 41 0 1 42 1 0 21 0 1 54 14 13 43 chain 48218 chr20 63025520 + 4641590 4643092 MER4E1 777 - 10 777 60304 213 874 133 207 1 12 54 8 1 128 0 2 17 chain 12721 chr20 63025520 + 4643421 4643605 MER30 238 - 0 194 149363 48 3 0 61 9 23 6 1 0 56 chain 7568 chr20 63025520 + 4649061 4649214 MLT1A 405 - 243 402 173744 29 10 36 64 30 10 20 chain 13404 chr20 63025520 + 4657200 4657381 MLT1A1 405 - 48 231 146694 165 5 7 11 chain 24534 chr20 63025520 + 4687744 4688046 AluSx4 309 + 7 309 107350 302 chain 26012 chr20 63025520 + 4688263 4688551 AluY 311 + 2 291 99968 130 0 1 158 chain 27865 chr20 63025520 + 4693555 4693952 L1PA8 5853 - 0 393 93474 93 1 0 19 12 11 42 2 1 8 2 1 70 2 0 43 2 1 45 1 4 55 chain 4658 chr20 63025520 + 4713540 4713596 MER5A1 166 - 91 147 198983 56 chain 398991 chr20 63025520 + 4733861 4739875 L1PB1 5432 - 33 5374 10136 8 1 0 21 1 0 4 0 4 15 3 1 14 51 36 16 6 5 38 7 6 10 2 1 53 2 0 9 16 11 11 1 0 22 1 0 8 8 7 448 7 23 73 0 6 376 0 1 246 0 1 201 0 3 222 378 0 57 10 12 107 0 1 139 0 1 202 0 1 62 1 28 52 3 1 342 6 0 115 0 4 98 4 6 366 0 3 358 325 0 142 6 0 7 1 0 549 0 4 119 0 1 92 12 13 15 3 1 4 0 1 538 chain 12222 chr20 63025520 + 4831295 4831806 MER30 238 - 2 238 151333 40 3 7 31 2 8 11 1 23 18 311 4 94 chain 13388 chr20 63025520 + 4857665 4857811 L1PA5 6144 + 5991 6137 146759 146 chain 6102 chr20 63025520 + 4889896 4889976 Tigger4a 237 - 123 199 184392 21 4 0 55 chain 23876 chr20 63025520 + 4954835 4955128 AluSp 311 + 1 297 111048 78 3 6 92 1 0 63 0 1 56 chain 22936 chr20 63025520 + 4964333 4964588 AluSp 311 + 13 268 115921 255 chain 7810 chr20 63025520 + 4987058 4987193 MER58D 378 - 172 304 172254 26 11 17 8 9 0 81 chain 6891 chr20 63025520 + 4988264 4988486 L1MB8 1703 - 78 237 178267 22 93 39 40 12 0 36 3 6 16 chain 156785 chr20 63025520 + 5007569 5009319 SVA_F 1814 + 10 1814 23762 515 0 79 284 1 0 4 0 1 43 0 1 10 5 19 34 0 1 95 39 0 81 1 0 10 1 0 627 chain 37545 chr20 63025520 + 5034159 5034620 MER11B 1079 + 0 461 72762 461 chain 20746 chr20 63025520 + 5034676 5035621 MLT1B 390 + 0 390 124801 25 10 5 104 611 62 18 15 16 7 2 0 153 chain 40632 chr20 63025520 + 5084312 5084878 L1MA3 4352 + 2958 3558 68394 23 1 0 68 3 0 138 1 0 77 0 17 89 0 3 8 2 0 20 1 2 9 0 17 67 1 4 58 chain 20241 chr20 63025520 + 5105010 5105292 AluSq2 311 + 11 303 126411 81 5 12 7 1 0 22 0 1 143 4 7 19 chain 22580 chr20 63025520 + 5111140 5111425 AluSp 311 + 0 274 117668 98 11 4 147 4 0 25 chain 11464 chr20 63025520 + 5138629 5138795 MER30 238 + 57 229 154456 55 13 22 55 3 0 40 chain 14600 chr20 63025520 + 5139835 5140004 L1PA4 6152 - 11 182 142593 102 0 1 29 0 1 38 chain 12594 chr20 63025520 + 5142862 5143043 Tigger4a 237 + 45 225 149864 132 15 14 34 chain 19685 chr20 63025520 + 5151420 5151636 L1P1 4361 + 3194 3410 128141 216 chain 33786 chr20 63025520 + 5160968 5161418 MER41A 554 - 94 554 77961 40 4 12 238 2 3 38 0 1 34 0 1 19 1 0 74 chain 37803 chr20 63025520 + 5161430 5161941 MER41-int 2638 - 5 544 72413 173 10 16 5 0 2 17 3 2 6 0 5 53 0 7 51 0 3 171 0 6 22 chain 96810 chr20 63025520 + 5180060 5181156 L1PA4 6152 - 0 1107 37607 23 0 7 125 0 1 67 8 10 369 0 1 504 chain 124444 chr20 63025520 + 5181156 5182537 L1PA4 6152 + 3673 5059 29558 9 0 1 673 0 4 699 chain 41584 chr20 63025520 + 5206363 5206864 L1PA6 6164 - 8 513 67179 139 0 7 7 7 0 63 0 7 50 3 0 232 chain 535796 chr20 63025520 + 5216419 5222821 L1PA7 6471 - 11 6471 3476 757 2 3 70 10 14 72 0 1 1328 0 1 333 0 9 170 0 1 206 13 13 179 0 2 183 14 18 353 0 3 991 1 0 539 0 4 171 0 24 608 1 2 198 0 4 203 chain 39090 chr20 63025520 + 5223310 5223781 L1PA6 6164 + 5680 6156 70617 291 0 3 18 1 2 16 0 1 145 chain 271210 chr20 63025520 + 5226318 5230150 L1PB2 3958 - 120 3892 15128 63 1 0 12 5 7 7 2 0 26 1 2 25 16 15 64 1 0 63 9 10 93 5 0 12 2 0 65 5 0 54 2 0 13 2 0 365 1 0 18 1 0 148 0 1 24 18 5 43 0 1 212 2 0 124 4 8 92 0 1 4 2 1 197 8 8 12 1 0 195 0 3 78 4 0 6 6 0 71 0 4 100 3 0 7 70 57 266 0 1 39 0 1 103 5 4 153 18 17 422 0 1 30 10 13 14 0 1 227 2 0 3 1 0 47 1 0 12 2 0 7 5 6 17 2 0 30 0 8 9 25 7 18 chain 22351 chr20 63025520 + 5251816 5252076 AluSp 311 + 31 291 118697 260 chain 156015 chr20 63025520 + 5256839 5258554 L1PA3long 6157 - 0 1715 23858 748 0 1 773 1 0 193 chain 115275 chr20 63025520 + 5258555 5259831 L1P1 4361 + 2679 3955 32691 1276 chain 8519 chr20 63025520 + 5262629 5262761 MLT1D 503 - 0 133 168197 97 20 21 15 chain 422144 chr20 63025520 + 5263853 5269586 L1PB1 5432 + 19 5401 9483 387 2 1 590 7 1 66 0 1 338 8 0 527 0 1 414 4 3 18 1 3 124 7 0 31 1 0 184 286 0 29 0 1 963 2 3 24 3 5 223 0 2 669 0 2 169 1 0 182 21 59 64 46 2 9 1 0 24 1 0 8 1 0 10 6 2 9 2 0 21 11 0 31 5 0 18 1 0 44 1 0 14 1 0 5 19 9 5 1 0 9 7 5 4 1 0 14 2 0 24 1 0 21 1 0 10 chain 20915 chr20 63025520 + 5266575 5266848 AluY 311 + 38 309 124226 94 0 1 145 0 2 17 5 0 12 chain 253896 chr20 63025520 + 5285716 5288825 HERVK9-int 4720 + 36 4720 16034 13 13 9 44 0 1 21 1 0 7 2 1 30 1 0 482 6 5 236 0 12 114 7 8 241 1 0 236 0 924 45 1 0 4 0 1 181 47 685 1111 0 1 23 0 4 113 0 3 129 chain 42836 chr20 63025520 + 5288825 5289358 MER9a2 513 + 0 513 65609 19 6 0 264 18 0 25 5 9 196 chain 33843 chr20 63025520 + 5292197 5292641 MLT2A1 477 + 0 477 77865 169 4 1 9 0 1 24 0 1 180 4 0 14 3 41 37 chain 4376 chr20 63025520 + 5306095 5306142 L1PA3long 6157 + 6110 6157 202249 47 chain 13283 chr20 63025520 + 5322654 5322871 L1MB3 1562 + 63 300 147156 83 1 0 71 23 43 22 6 7 11 chain 84891 chr20 63025520 + 5360722 5361626 L1HS 6032 - 422 1326 41557 904 chain 38036 chr20 63025520 + 5361626 5362035 L1HS 6032 + 5615 6024 72078 409 chain 57295 chr20 63025520 + 5374615 5375286 L1PA7 6471 - 6 678 54341 457 0 1 214 chain 106358 chr20 63025520 + 5375290 5376543 L1PA7 6471 + 4532 5785 35162 9 0 1 942 1 0 138 2 0 85 5 7 71 chain 3829 chr20 63025520 + 5382052 5382092 LTR33 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155 4 0 337 6 3 257 310 0 475 0 1 6 1 0 274 0 2 37 2 0 279 1 0 288 1 0 413 0 1 141 0 1 256 0 1 65 0 1 19 0 4 61 0 1 154 2 0 92 1 16 29 0 3 137 0 1 732 1 12 294 0 7 31 0 1 263 0 6 11 7 1 168 0 9 148 18 6 139 4 5 50 34 13 13 1 0 11 2 0 21 chain 3772 chr20 63025520 + 5444475 5444526 LTR49-int 1717 - 1215 1264 210791 28 1 0 3 1 0 18 chain 101297 chr20 63025520 + 5456639 5457786 L1PA5 6144 + 4986 6134 36443 824 0 1 323 chain 226588 chr20 63025520 + 5495207 5499678 L1PA5 6144 + 3558 6144 17507 513 1886 0 25 2 0 1714 0 1 193 0 2 138 chain 86677 chr20 63025520 + 5495731 5496692 L1PA4 6152 - 899 1860 40893 961 chain 74704 chr20 63025520 + 5496692 5497566 L1PA4 6152 + 5264 6143 45783 34 0 4 159 0 1 526 17 17 138 chain 11821 chr20 63025520 + 5594435 5594618 MER30 238 - 1 207 152943 6 0 6 26 3 0 58 16 36 74 chain 7437 chr20 63025520 + 5611761 5611844 LTR8 732 - 15 98 174535 83 chain 28388 chr20 63025520 + 5615728 5616163 MER41A 554 + 0 389 91631 54 1 2 37 0 1 238 17 11 13 44 2 31 chain 120970 chr20 63025520 + 5619322 5620697 SVA_C 1631 - 9 1631 30703 579 1 0 25 1 0 50 0 92 29 0 40 197 0 117 472 8 8 13 chain 49003 chr20 63025520 + 5632308 5632958 MER4A 717 + 35 680 59747 88 15 0 115 0 1 66 10 19 356 chain 5593 chr20 63025520 + 5643718 5643788 MLT1B 390 + 285 355 189152 70 chain 7460 chr20 63025520 + 5660575 5660683 MLT1A0 366 - 209 318 174399 79 15 16 14 chain 4399 chr20 63025520 + 5666845 5666903 MER3 215 + 132 190 201937 58 chain 128290 chr20 63025520 + 5681973 5683380 SVA_D 2077 + 4 2073 28499 29 0 6 501 0 40 218 0 615 31 0 1 628 chain 6002 chr20 63025520 + 5685278 5685346 MLT1D 503 - 0 68 185221 68 chain 25507 chr20 63025520 + 5704177 5704484 AluSg7 307 + 0 307 102192 46 1 0 85 0 1 175 chain 19434 chr20 63025520 + 5709265 5709521 AluSp 311 - 13 289 128860 18 0 3 94 16 33 128 chain 5099 chr20 63025520 + 5709957 5710020 MLT1D 503 + 440 503 194094 63 chain 18170 chr20 63025520 + 5726838 5727107 LTR8 732 + 0 281 132407 137 11 19 41 17 21 63 chain 21774 chr20 63025520 + 5731979 5732249 AluSg4 309 - 38 308 121119 270 chain 5589 chr20 63025520 + 5733748 5733944 MER4D0 881 - 576 658 189184 68 114 0 14 chain 3842 chr20 63025520 + 5734712 5734761 MER4D 903 - 665 716 209756 21 0 2 28 chain 27080 chr20 63025520 + 5741714 5742067 L1PA8 5853 + 5506 5853 96000 58 1 0 44 2 0 70 2 1 61 2 1 19 1 0 93 chain 23987 chr20 63025520 + 5743681 5743961 AluSp 311 + 11 307 110399 209 0 16 71 chain 24032 chr20 63025520 + 5755120 5755481 MSTA 426 - 21 426 110155 87 19 45 113 0 18 21 2 0 6 14 16 99 chain 13667 chr20 63025520 + 5767251 5767441 MER39B 650 + 261 453 145718 81 4 5 46 1 2 58 chain 5264 chr20 63025520 + 5771807 5771871 L1MDb 1215 + 832 896 192369 64 chain 4536 chr20 63025520 + 5796256 5796309 MER58C 217 + 161 214 200398 53 chain 11344 chr20 63025520 + 5799807 5799993 LTR45B 484 - 295 476 154909 25 1 2 30 14 1 46 12 19 58 chain 4406 chr20 63025520 + 5820807 5820907 MIR 256 + 24 121 201857 46 1 0 6 29 27 18 chain 29787 chr20 63025520 + 5830323 5830635 AluYb8 318 + 0 312 85521 312 chain 23456 chr20 63025520 + 5842925 5843252 LTR57 402 + 10 394 113344 162 11 66 43 0 1 85 8 9 18 chain 20261 chr20 63025520 + 5860517 5860879 THE1B 368 - 0 368 126342 56 1 2 4 1 0 57 11 10 7 1 0 14 13 20 29 1 0 46 15 16 16 9 10 81 chain 85155 chr20 63025520 + 5865651 5866643 LTR5B 1012 + 0 1012 41467 134 0 14 780 0 6 78 chain 30436 chr20 63025520 + 5943001 5943319 AluYb8 318 - 0 318 83564 318 chain 6373 chr20 63025520 + 5945213 5945288 HY1 111 + 30 105 182223 75 chain 5478 chr20 63025520 + 5975756 5975822 MER58B 340 - 144 210 190237 66 chain 5033 chr20 63025520 + 6005018 6005077 Tigger1 2417 - 741 800 194801 59 chain 6527 chr20 63025520 + 6051470 6051584 MLT1C 463 - 293 400 181039 28 25 18 61 chain 25879 chr20 63025520 + 6093656 6094005 THE1B 368 + 0 366 100531 44 24 39 86 6 8 189 chain 9854 chr20 63025520 + 6096885 6097021 L1PA7 6471 + 6329 6465 161321 36 1 0 11 1 2 87 chain 3209 chr20 63025520 + 6111061 6111133 MIRb 242 - 50 134 220749 30 23 35 19 chain 19149 chr20 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1087 37152 1087 chain 144294 chr20 63025520 + 6950506 6952130 L1P1 4361 + 2278 3902 25430 1624 chain 183141 chr20 63025520 + 6960949 6962998 L1PA4 6152 - 13 2062 20666 320 1 2 233 0 1 282 1 0 1000 2 1 210 chain 20611 chr20 63025520 + 6971933 6972312 THE1D 372 + 16 372 125261 20 29 11 27 36 31 60 7 11 6 1 0 18 2 0 25 1 0 147 chain 37628 chr20 63025520 + 6977207 6977640 L1PA5 6144 - 19 452 72651 433 chain 15366 chr20 63025520 + 6981985 6982284 THE1B 368 + 0 307 140304 103 13 14 44 75 82 64 chain 4113 chr20 63025520 + 6985327 6985378 L1MD2 1676 - 943 994 205732 51 chain 38800 chr20 63025520 + 7002191 7002702 THE1C-int 1605 + 0 517 71016 14 2 1 425 11 18 59 chain 46135 chr20 63025520 + 7047370 7048101 L1PB1 5432 + 4733 5427 61908 370 1 0 14 10 7 14 1 0 9 1 0 9 6 2 9 2 0 50 22 20 43 1 0 16 3 0 7 14 5 19 8 5 14 2 0 24 2 1 20 1 0 13 1 0 18 2 0 5 chain 23360 chr20 63025520 + 7086374 7086701 AluY 311 + 0 299 113867 126 16 0 166 12 0 7 chain 16771 chr20 63025520 + 7086840 7087167 L1PB1 5432 - 23 318 136196 5 1 0 13 1 0 21 1 0 22 2 0 16 7 4 20 15 5 7 3 0 16 1 0 43 1 0 16 2 1 53 2 0 9 16 11 12 1 0 21 chain 564536 chr20 63025520 + 7096828 7102846 L1HS 6032 - 0 6031 223 5270 0 13 748 chain 62222 chr20 63025520 + 7105322 7105988 L1PA2 6032 - 0 666 51786 666 chain 26321 chr20 63025520 + 7143559 7143964 THE1D-int 1627 + 0 354 98735 15 16 19 75 54 0 245 chain 19950 chr20 63025520 + 7156499 7156863 THE1B 368 - 0 368 127302 55 8 7 63 72 76 50 12 13 104 chain 25474 chr20 63025520 + 7165768 7166050 L1PA4 6152 + 5862 6144 102339 282 chain 117927 chr20 63025520 + 7241573 7242911 L1PA4 6152 - 0 1346 31827 6 0 5 140 0 6 3 5 0 179 0 1 597 0 1 408 chain 160403 chr20 63025520 + 7256985 7258785 L1PA5 6144 + 4334 6132 23287 960 2 0 838 chain 29034 chr20 63025520 + 7274345 7274649 AluYa5 310 - 6 310 88835 304 chain 56707 chr20 63025520 + 7279727 7280340 L1PA2 6032 - 0 613 54714 613 chain 15725 chr20 63025520 + 7295186 7295382 L1PA8 5853 - 445 641 139196 196 chain 79745 chr20 63025520 + 7301662 7302727 L1P2 5180 + 2321 3391 43709 8 3 0 56 5 4 199 0 4 79 0 1 381 3 4 175 28 25 5 0 1 7 0 4 18 0 1 12 0 1 4 1 0 81 chain 8267 chr20 63025520 + 7314421 7314540 MSTB1 431 + 294 414 169580 27 12 13 80 chain 16759 chr20 63025520 + 7321716 7321905 L1PA4 6152 - 16 205 136233 189 chain 40745 chr20 63025520 + 7321905 7322354 L1PA4 6152 + 5443 5895 68247 378 0 3 71 chain 20141 chr20 63025520 + 7344248 7344591 THE1B 368 + 0 368 126705 40 32 47 81 2 0 28 1 0 5 29 42 125 chain 18404 chr20 63025520 + 7346153 7346497 THE1B 368 + 0 368 131771 44 5 20 43 6 3 65 1 0 15 0 1 5 1 0 5 64 77 90 chain 4625 chr20 63025520 + 7348634 7348765 MER3 215 - 42 182 199344 16 55 65 55 1 0 4 chain 33393 chr20 63025520 + 7383697 7384063 L1PA3long 6157 - 0 366 78581 366 chain 93681 chr20 63025520 + 7394689 7395762 MER11C 1089 - 16 1089 38446 297 0 1 207 6 5 563 chain 27721 chr20 63025520 + 7507269 7507579 AluYa5 310 - 5 310 93965 13 5 0 292 chain 3903 chr20 63025520 + 7513695 7513740 Tigger4a 237 + 3 48 208812 45 chain 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29861 chr20 63025520 + 7621894 7622210 AluYb8 318 - 2 318 85240 316 chain 76964 chr20 63025520 + 7643183 7644031 L1PA3long 6157 + 5305 6157 44991 124 0 1 66 0 3 658 chain 23904 chr20 63025520 + 7650726 7650985 L1HS 6032 - 4629 4888 110887 259 chain 20542 chr20 63025520 + 7658719 7658965 L1PA5 6144 + 5895 6143 125501 205 0 2 41 chain 43921 chr20 63025520 + 7681763 7682258 L1PA4 6152 + 5655 6151 64306 237 1 0 28 0 2 229 chain 3661 chr20 63025520 + 7686296 7686393 L1MA6 2487 - 460 556 212552 24 40 39 33 chain 8466 chr20 63025520 + 7696176 7696281 MER85 139 + 0 115 168486 90 0 10 15 chain 6712 chr20 63025520 + 7697270 7697389 L1MB1 2102 + 1947 2061 179596 59 24 20 12 1 0 23 chain 100310 chr20 63025520 + 7697951 7699055 L1PA3long 6157 + 5049 6157 36691 764 0 4 340 chain 20324 chr20 63025520 + 7703074 7703300 L1PA4 6152 - 1 228 126167 149 0 1 77 chain 23187 chr20 63025520 + 7726437 7726687 L1HS 6032 + 5778 6028 114740 250 chain 12003 chr20 63025520 + 7754935 7755154 MER30 238 - 0 200 152184 48 3 0 48 24 21 7 8 0 7 5 0 69 chain 23672 chr20 63025520 + 7757894 7758264 THE1B 368 + 0 368 112192 22 0 1 79 8 2 65 1 0 22 44 52 26 4 0 99 chain 4941 chr20 63025520 + 7760095 7760155 MSTA 426 + 355 415 195785 60 chain 20330 chr20 63025520 + 7765765 7766553 L1PB1 5432 + 4963 5404 126140 135 357 12 4 1 0 24 1 0 9 16 11 11 4 32 19 2 1 16 5 4 30 14 12 13 3 0 17 30 19 14 2 0 23 2 0 22 1 0 13 chain 15368 chr20 63025520 + 7767101 7767302 L1PA4 6152 + 5947 6152 140294 174 6 10 21 chain 12212 chr20 63025520 + 7772057 7772205 L1PA16 3655 - 84 232 151377 148 chain 98746 chr20 63025520 + 7783435 7784728 LTR12C 1709 - 0 1709 37089 172 1 99 21 0 1 6 5 9 144 0 1 27 12 5 23 0 2 81 9 6 169 4 281 134 0 1 59 6 4 83 0 43 40 0 1 8 3 0 8 0 4 163 1 0 114 chain 468899 chr20 63025520 + 7787033 7793567 L1PA7 6471 - 13 5771 8077 147 486 5 169 1 0 433 0 1 63 0 1 17 3 0 372 0 1 300 1 0 271 9 13 634 2 1 194 15 0 165 0 1 110 7 11 26 1 0 20 1 0 26 0 4 308 11 18 233 0 3 211 2 1 4 0 1 62 0 1 28 302 0 43 0 1 132 0 3 64 1 0 333 1 0 22 0 1 190 2 1 48 7 6 309 8 9 92 0 1 648 chain 39552 chr20 63025520 + 7794287 7794753 L1P3 4156 - 2834 3297 69954 5 3 0 458 chain 24471 chr20 63025520 + 7807065 7807360 AluY 311 + 9 303 107696 124 1 0 170 chain 38220 chr20 63025520 + 7813406 7813885 LTR12_ 688 - 7 613 71813 168 1 103 108 0 1 97 0 24 105 chain 67482 chr20 63025520 + 7813885 7814718 HERV9-int 5642 - 4810 5642 49459 41 4 3 247 1 0 4 1 2 535 chain 59537 chr20 63025520 + 7814746 7815503 LTR12 884 - 0 884 53084 172 9 7 328 2 0 61 0 132 159 1 0 25 chain 23804 chr20 63025520 + 7840824 7841116 L1PA7 6471 + 6176 6468 111456 292 chain 8177 chr20 63025520 + 7844015 7844212 L1PA17 2846 + 2501 2693 170087 33 16 15 42 1 0 10 1 0 17 46 44 31 chain 70421 chr20 63025520 + 7871214 7872331 L1PB1 5432 - 8 1096 48203 4 1 0 16 1 0 13 1 0 9 10 9 27 2 0 14 8 5 18 19 9 4 1 0 15 1 0 44 1 0 16 2 1 45 8 6 11 16 11 9 1 0 24 1 0 8 8 7 272 1 4 187 8 4 14 0 4 105 3 5 12 2 1 155 chain 3244 chr20 63025520 + 7875166 7875205 MER5B 177 + 126 165 220123 39 chain 3259 chr20 63025520 + 7879245 7879286 MER3 215 + 12 53 219786 41 chain 17828 chr20 63025520 + 7912672 7912924 THE1D 372 + 78 333 133306 89 23 26 140 chain 510342 chr20 63025520 + 7932216 7939317 L1PA5 6144 - 32 6144 6135 890 2 3 1126 0 1 846 0 3 79 2 0 51 0 5 376 0 5 421 2 1 827 974 0 309 24 15 202 25 0 113 17 0 11 1 18 159 0 1 206 46 36 261 0 14 102 1 3 28 chain 83032 chr20 63025520 + 7936846 7937809 LTR5_Hs 974 + 0 969 42322 211 0 1 612 0 6 40 1 0 99 chain 23170 chr20 63025520 + 8002515 8002886 THE1B 368 + 0 368 114815 13 2 0 19 5 10 130 7 6 22 4 0 91 33 32 45 chain 10807 chr20 63025520 + 8015089 8015228 L1MA5 2750 + 2486 2630 156956 68 0 7 17 2 0 52 chain 32472 chr20 63025520 + 8034557 8035025 L1PA8 5853 - 0 464 80076 14 7 5 7 0 2 65 1 0 18 1 0 38 28 26 12 0 2 56 2 0 44 1 0 48 0 1 126 chain 20018 chr20 63025520 + 8037109 8037404 L1PA8 5853 - 0 289 127090 92 5 4 15 1 0 29 3 0 5 3 0 6 7 12 6 1 0 76 2 0 44 chain 59911 chr20 63025520 + 8037875 8038563 L1PA4 6152 - 0 693 52868 10 0 6 124 1 0 553 chain 541810 chr20 63025520 + 8089523 8095560 L1PA3long 6157 - 8 6153 2544 938 24 0 328 0 4 366 0 3 1294 1 0 1083 0 1 1228 6 130 621 0 1 148 chain 17714 chr20 63025520 + 8109610 8109814 L1PA4 6152 + 5945 6149 133663 204 chain 122430 chr20 63025520 + 8139145 8141019 THE1B-int 1605 - 5 1587 30242 177 0 4 392 0 6 553 11 36 58 327 0 356 chain 3797 chr20 63025520 + 8155723 8155769 MADE1 96 - 50 96 210425 46 chain 28690 chr20 63025520 + 8160494 8160804 AluYa5 310 - 0 310 90370 310 chain 28557 chr20 63025520 + 8165456 8165777 L1PA7 6471 - 17 338 90928 321 chain 153527 chr20 63025520 + 8177322 8179053 L1PA5 6144 - 5 1746 24152 591 0 7 244 0 3 896 chain 75565 chr20 63025520 + 8248631 8249464 L1PA5 6144 - 16 849 45737 833 chain 23041 chr20 63025520 + 8249737 8250011 L1PA7 6471 - 5 279 115440 138 1 0 4 0 1 131 chain 14311 chr20 63025520 + 8300492 8300653 L1PA4 6152 + 5990 6151 143526 161 chain 4913 chr20 63025520 + 8317181 8317242 MER5A1 166 - 35 96 196141 61 chain 482175 chr20 63025520 + 8359648 8366515 L1PA8A 6298 - 8 6258 7651 100 2 0 693 14 0 5 1 3 265 1 0 206 0 18 13 1 0 28 1 2 312 8 11 184 10 10 35 2 3 24 0 1 309 0 1 127 0 1 59 0 1 6 2 0 475 3 0 6 6 2 24 2 0 222 2 0 115 582 0 56 0 4 243 26 24 125 0 8 6 0 1 61 10 3 108 0 2 186 0 7 54 0 5 681 0 1 205 0 1 119 0 3 257 0 1 60 4 0 131 0 1 54 0 3 184 7 5 23 6 4 73 8 0 22 1 0 42 2 0 8 5 0 16 1 0 7 2 1 5 1 0 7 2 1 13 1 0 4 2 0 17 2 0 9 2 1 4 1 0 15 2 1 9 1 0 19 13 5 5 1 0 16 7 4 22 20 9 12 2 1 15 chain 8406 chr20 63025520 + 8368477 8368589 L1MB3 1562 + 1438 1549 168814 86 1 0 25 chain 3158 chr20 63025520 + 8405845 8405881 MER51A 677 - 351 387 221769 36 chain 166262 chr20 63025520 + 8424692 8426575 L1PA5 6144 - 1 1881 22491 10 1 4 278 10 1 553 0 3 1031 chain 65635 chr20 63025520 + 8426575 8427321 L1PA5 6144 + 3502 4249 50140 173 1 0 536 0 2 36 chain 4384 chr20 63025520 + 8441567 8441620 MER3 215 + 0 53 202144 53 chain 73303 chr20 63025520 + 8446329 8447130 L1PA3long 6157 + 5355 6157 46882 652 0 1 149 chain 29889 chr20 63025520 + 8467128 8467441 AluYb8 318 - 5 318 85138 313 chain 14040 chr20 63025520 + 8496504 8496858 THE1B 368 - 2 368 144421 76 0 7 43 1 0 8 1 0 18 130 136 39 16 17 22 chain 108709 chr20 63025520 + 8513512 8514708 L1PA3long 6157 - 0 1196 34506 1196 chain 30358 chr20 63025520 + 8517706 8518266 MER50 708 - 19 708 83760 141 1 0 24 110 235 126 3 1 58 0 1 4 29 37 10 3 1 51 chain 10532 chr20 63025520 + 8529677 8529810 L1PA8 5853 + 5722 5853 158123 18 2 1 19 1 0 93 chain 24541 chr20 63025520 + 8530632 8530920 THE1C-int 1605 + 1311 1599 107307 288 chain 160660 chr20 63025520 + 8544206 8546127 L1PA7 6471 + 4522 6461 23241 167 0 1 393 5 6 76 0 9 127 1 2 318 1 0 82 1 0 605 7 0 7 8 15 107 0 8 16 chain 8537 chr20 63025520 + 8572985 8573101 Tigger4 2445 - 2116 2244 168095 65 0 5 20 0 9 9 2 0 20 chain 557827 chr20 63025520 + 8575748 8581774 L1PA2 6032 - 2 6032 522 1122 0 1 370 1 0 1397 0 4 954 1 2 1924 1 0 256 chain 22590 chr20 63025520 + 8599801 8600091 AluSg 306 + 0 306 117630 25 16 32 249 chain 26237 chr20 63025520 + 8619661 8620036 MER83C 372 - 0 372 99068 230 28 19 45 2 4 6 0 4 64 chain 139535 chr20 63025520 + 8624403 8625969 SVA_D 2077 + 0 2077 26214 20 4 0 864 6 504 13 5 1 10 0 1 316 0 10 184 0 10 144 chain 157049 chr20 63025520 + 8668021 8670185 L1PB1 5432 - 21 2151 23714 7 1 0 13 1 0 21 6 0 24 2 0 20 7 4 26 1 0 13 5 4 42 8 7 9 2 1 38 42 35 13 34 31 469 4 0 9 3 4 177 0 1 12 15 6 602 0 2 85 0 1 32 0 1 421 chain 17002 chr20 63025520 + 8714244 8714431 L1PA3long 6157 + 5955 6142 135591 187 chain 26054 chr20 63025520 + 8714486 8714807 AluY 311 + 0 307 99810 123 1 0 8 5 0 133 8 0 43 chain 6966 chr20 63025520 + 8719102 8719183 L1PA3long 6157 + 6056 6137 177709 81 chain 24881 chr20 63025520 + 8733639 8733955 MER1A 529 + 143 456 105452 249 3 0 64 chain 20565 chr20 63025520 + 8742583 8742868 AluSp 311 + 10 293 125412 38 7 5 70 1 0 12 6 7 151 chain 31027 chr20 63025520 + 8751160 8751547 MER4A1 472 - 81 471 82469 47 0 2 316 0 1 24 chain 73469 chr20 63025520 + 8774051 8775112 MER11C 1089 - 16 1089 46803 8 0 1 136 1 0 8 1 0 54 0 1 15 14 17 58 14 6 31 0 1 38 1 0 4 1 5 75 81 82 181 1 0 31 0 4 61 0 9 247 chain 4937 chr20 63025520 + 8804107 8804167 MER2 342 + 267 327 195825 60 chain 13429 chr20 63025520 + 8815576 8815772 MLT2B4 540 - 343 540 146579 155 16 17 25 chain 20735 chr20 63025520 + 8859644 8859925 L1PA16 3655 - 92 374 124834 152 0 1 19 3 5 95 2 0 10 chain 24259 chr20 63025520 + 8899619 8899922 AluSg 306 + 5 306 108895 292 2 0 9 chain 12090 chr20 63025520 + 8934396 8934547 MLT1A0 366 - 16 167 151839 151 chain 8923 chr20 63025520 + 8938499 8938638 MLT1B 390 - 0 140 166014 90 17 18 32 chain 31221 chr20 63025520 + 8953805 8954185 MER41A 554 + 0 385 82119 93 0 1 70 0 2 189 0 2 28 chain 28240 chr20 63025520 + 8960420 8960774 L1PA8 5853 - 0 348 92152 93 1 0 19 2 1 61 1 0 70 2 0 45 1 0 59 chain 4540 chr20 63025520 + 8980593 8980643 MER50 708 + 0 50 200333 50 chain 3933 chr20 63025520 + 8996081 8996145 L1PB1 5432 - 10 73 208365 18 1 0 8 3 4 22 1 0 11 chain 5748 chr20 63025520 + 9001267 9001334 MER5A1 166 - 91 158 187660 67 chain 18202 chr20 63025520 + 9006475 9006732 LTR8 732 + 11 285 132326 4 0 1 16 0 9 62 4 5 43 1 7 127 chain 15761 chr20 63025520 + 9023160 9023427 L1PB2 3958 + 3587 3836 139082 26 20 6 62 2 1 64 13 11 13 6 5 61 chain 21393 chr20 63025520 + 9041113 9041377 AluY 311 + 30 294 122529 88 1 0 14 0 1 161 chain 20677 chr20 63025520 + 9065477 9065718 AluY 311 + 60 301 125043 241 chain 5359 chr20 63025520 + 9086889 9086968 MADE1 96 - 0 95 191448 31 6 22 42 chain 21250 chr20 63025520 + 9096090 9096324 L1PA4 6152 - 14 248 123023 234 chain 13776 chr20 63025520 + 9098747 9098915 L1PA4 6152 - 28 196 145347 168 chain 26237 chr20 63025520 + 9132002 9132354 THE1A 353 + 2 353 99065 33 4 5 68 3 2 123 2 1 119 chain 124514 chr20 63025520 + 9132354 9133930 THE1A-int 1579 + 0 1579 29537 474 0 2 460 4 3 37 0 3 130 9 5 263 4 6 94 0 1 101 chain 6521 chr20 63025520 + 9178009 9178091 MER33 330 + 70 151 181073 10 1 0 71 chain 43868 chr20 63025520 + 9220255 9220801 MLT2A2 560 - 0 560 64369 147 0 11 86 1 2 97 0 1 12 0 1 203 chain 3362 chr20 63025520 + 9226960 9226997 MADE1 96 - 59 96 217829 37 chain 6465 chr20 63025520 + 9244058 9244140 MER5A1 166 + 0 82 181518 82 chain 27433 chr20 63025520 + 9255724 9256075 THE1A 353 - 0 353 94871 159 0 3 81 5 4 106 chain 26291 chr20 63025520 + 9276237 9276527 L1PA4 6152 - 1170 1460 97472 290 chain 101953 chr20 63025520 + 9276527 9277666 L1PA4 6152 + 5013 6152 36276 424 1 0 102 0 1 612 chain 12524 chr20 63025520 + 9285540 9285692 L1PA4 6152 - 0 157 150139 6 0 5 146 chain 5505 chr20 63025520 + 9319959 9320037 MER5A1 166 - 43 122 189999 44 3 4 31 chain 7583 chr20 63025520 + 9331852 9331937 L1PA4 6152 - 18 103 173647 85 chain 91640 chr20 63025520 + 9335945 9336967 L1PA3long 6157 - 2 1026 39075 257 2 0 590 0 4 173 chain 119610 chr20 63025520 + 9365446 9366926 SVA_A 1864 - 0 1835 31176 38 8 0 544 2 0 77 3 0 61 1 0 10 3 0 43 1 2 29 3 0 39 4 1 72 0 413 497 36 0 9 chain 30115 chr20 63025520 + 9372819 9373209 MER51B 395 - 12 389 84432 126 2 3 9 1 0 206 19 6 27 chain 4216 chr20 63025520 + 9387780 9387919 MER5A 189 + 38 173 204337 6 6 0 17 35 40 33 17 14 25 chain 24946 chr20 63025520 + 9394035 9394324 AluY 311 + 11 301 105073 121 0 1 168 chain 10926 chr20 63025520 + 9395582 9395788 MER44A 345 - 27 255 156504 36 42 45 67 1 6 49 0 14 11 chain 8376 chr20 63025520 + 9410602 9410708 MER30 238 - 1 104 168989 44 3 0 59 chain 13812 chr20 63025520 + 9416634 9416863 Tigger4b 360 + 43 297 145214 32 41 64 57 0 2 99 chain 24493 chr20 63025520 + 9418742 9419030 AluYk4 311 + 11 299 107581 288 chain 9837 chr20 63025520 + 9429153 9429369 MER30 238 + 0 227 161406 15 30 26 52 0 3 7 10 0 15 28 50 59 chain 527202 chr20 63025520 + 9441934 9448080 L1PA6 6164 + 0 6160 4478 381 0 2 184 1 0 220 0 17 1058 0 1 462 12 0 284 0 1 696 1 0 449 4 0 179 1 4 1178 0 2 194 0 4 134 6 7 539 9 10 154 chain 3619 chr20 63025520 + 9462759 9462838 MER104 178 - 74 149 213371 17 27 23 35 chain 3791 chr20 63025520 + 9472917 9472983 MER58B 340 + 139 206 210516 36 10 11 20 chain 5740 chr20 63025520 + 9485188 9485281 MER33 330 + 161 254 187732 15 4 6 65 2 0 7 chain 36828 chr20 63025520 + 9517224 9517696 L1PA7 6471 + 5985 6458 73766 167 0 1 154 15 15 136 chain 8625 chr20 63025520 + 9529015 9529126 L1PA2 6032 - 0 102 167611 11 9 0 91 chain 4135 chr20 63025520 + 9541572 9541620 MER5A1 166 - 73 121 205440 48 chain 12566 chr20 63025520 + 9574111 9574293 L1PA8 5853 - 0 224 149985 51 0 46 15 2 1 47 2 0 14 1 0 50 chain 4872 chr20 63025520 + 9607102 9607237 MER119 576 + 148 276 196572 41 60 53 34 chain 12650 chr20 63025520 + 9620714 9621209 L1PA4 6152 - 9 499 53594 154 15 10 326 chain 135908 chr20 63025520 + 9621212 9622802 LTR12C 1709 - 0 1709 26856 481 0 4 107 2 0 6 1 0 274 1 0 15 0 119 211 0 1 386 2 1 104 chain 5290 chr20 63025520 + 9622803 9623010 L1PA4 6152 - 499 706 53594 207 chain 187351 chr20 63025520 + 9650422 9652541 L1PA4 6152 - 1 2120 20303 142 8 7 47 2 0 15 0 4 621 2 1 1282 chain 24006 chr20 63025520 + 9656603 9656953 THE1B 368 - 0 368 110297 75 1 0 84 17 19 18 11 9 20 0 4 85 0 15 39 chain 26109 chr20 63025520 + 9659235 9659572 THE1C 375 - 30 375 99581 6 0 1 124 3 10 14 1 0 12 0 1 177 chain 124526 chr20 63025520 + 9695294 9696688 L1PA5 6144 + 4732 6128 29534 51 0 2 1343 chain 3330 chr20 63025520 + 9696768 9696804 L1HS 6032 + 5996 6032 218392 36 chain 20674 chr20 63025520 + 9702985 9703263 AluY 311 + 0 285 125055 30 22 29 67 0 1 133 2 1 24 chain 11942 chr20 63025520 + 9707325 9707479 L1PA8 5853 + 5701 5853 152433 39 2 1 19 1 0 93 chain 109638 chr20 63025520 + 9727426 9728671 L1P1 4361 + 3075 4318 34292 1075 1 0 154 2 1 13 chain 11832 chr20 63025520 + 9748485 9748635 L1PA16 3655 + 3323 3473 152896 93 1 0 15 0 1 41 chain 18899 chr20 63025520 + 9753901 9754110 L1PA5 6144 - 13 222 130370 209 chain 15620 chr20 63025520 + 9757904 9758182 THE1B 368 + 0 292 139522 47 0 1 71 12 13 35 34 48 17 1 0 7 7 6 47 chain 3029 chr20 63025520 + 9774134 9774166 L1PA8 5853 - 812 844 224386 32 chain 62765 chr20 63025520 + 9774169 9774990 L1PA8 5853 + 5037 5853 51552 57 2 1 149 0 2 318 1 0 44 2 0 70 12 10 6 0 1 45 2 1 19 2 1 92 chain 29890 chr20 63025520 + 9777960 9778299 L1PA5 6144 + 5800 6139 85126 339 chain 300072 chr20 63025520 + 9839076 9842311 L1PA2 6032 + 2797 6032 13420 3235 chain 13384 chr20 63025520 + 9853283 9853657 LTR8A 794 + 0 418 146767 19 0 1 6 173 194 63 8 30 105 chain 34063 chr20 63025520 + 9854161 9854626 LTR10F 562 + 0 562 77524 124 2 117 40 21 3 278 chain 3910 chr20 63025520 + 9882041 9882092 L1MA4 2864 - 55 104 208702 43 2 0 6 chain 26143 chr20 63025520 + 9886991 9887365 MLT2A1 477 - 92 477 99436 62 1 0 17 5 11 86 6 7 24 13 17 20 0 1 140 chain 182840 chr20 63025520 + 9914626 9917562 L1PB1 5432 - 10 2585 20695 18 1 0 12 2 1 21 1 0 24 2 0 14 1 0 5 8 6 13 16 6 20 2 1 44 1 0 16 2 1 52 3 1 8 6 2 13 1 0 10 1 0 21 1 0 4 12 11 15 0 4 119 7 22 57 3 0 174 0 2 82 3 0 174 0 3 5 3 0 474 6 7 175 7 8 31 34 23 293 346 11 30 0 1 5 11 10 365 2 1 160 chain 82868 chr20 63025520 + 9917562 9918713 L1PB1 5432 + 1730 2891 42388 417 0 1 93 11 11 199 0 1 7 2 1 39 1 3 22 0 1 51 6 9 174 37 43 39 4 1 49 chain 6864 chr20 63025520 + 9925430 9925637 MER57A-int 1588 - 1143 1338 178472 7 1 0 15 76 67 39 19 17 50 chain 2737 chr20 63025520 + 9937314 9937365 MLT1H 522 - 379 431 229656 28 8 9 15 chain 22660 chr20 63025520 + 9941237 9941519 L1PA7 6471 + 6182 6465 117274 114 1 2 4 1 0 13 0 1 149 chain 4936 chr20 63025520 + 9952373 9952450 MLT1A0 366 + 286 364 195868 53 8 9 16 chain 31676 chr20 63025520 + 9970626 9970987 L1PA4 6152 + 5775 6138 81363 108 0 1 154 0 1 99 chain 13906 chr20 63025520 + 9978910 9979061 L1PA3long 6157 + 6004 6155 144898 151 chain 12009 chr20 63025520 + 9981468 9981598 AluYc 301 + 161 291 152157 130 chain 120646 chr20 63025520 + 10012146 10013573 LTR12C 1709 + 0 1709 30818 424 3 4 31 0 1 27 0 1 162 0 278 184 1 0 5 3 1 106 0 4 481 chain 10748 chr20 63025520 + 10038755 10038880 Tigger2b_Pri 1066 + 301 426 157211 125 chain 16777 chr20 63025520 + 10049347 10049632 L1MA2 4263 + 3829 4105 136174 90 58 56 83 7 0 47 chain 39612 chr20 63025520 + 10059399 10059896 LTR12F 595 - 11 595 69875 150 2 0 71 0 1 96 1 0 9 2 92 20 2 0 41 0 1 103 chain 11586 chr20 63025520 + 10077652 10077793 L1MA5 2750 + 2114 2255 153944 141 chain 63638 chr20 63025520 + 10077845 10078882 L1PB1 5432 - 14 1112 51175 14 1 0 13 1 0 21 1 0 24 2 0 14 43 53 41 2 1 18 2 1 49 2 0 10 5 1 14 1 0 6 1 0 24 3 0 9 1 2 56 0 1 13 20 0 13 20 28 26 0 2 107 1 80 147 9 7 303 chain 12496 chr20 63025520 + 10098002 10099472 L1PB1 5432 - 151 373 150260 44 1 0 16 3 1 50 3 1 10 2 0 3 2 0 9 1 0 9 1 0 24 1 0 11 1243 7 37 chain 27795 chr20 63025520 + 10103804 10104170 THE1B 368 - 0 368 93715 194 3 2 130 0 5 22 2 0 15 chain 126176 chr20 63025520 + 10104175 10105745 THE1B-int 1605 - 5 1604 29047 302 0 1 12 0 1 827 0 25 415 0 2 14 chain 7135 chr20 63025520 + 10106890 10106990 THE1-int 844 - 278 378 176516 10 1 0 7 4 5 78 chain 15852 chr20 63025520 + 10117235 10117452 MER47A 366 + 93 318 138798 76 2 4 116 4 10 19 chain 5079 chr20 63025520 + 10125542 10125606 LTR33B 472 + 379 443 194306 64 chain 23030 chr20 63025520 + 10131932 10132493 L1PB1 5432 - 10 476 115490 18 1 0 13 1 0 21 1 0 20 29 24 18 22 7 5 1 0 15 1 0 37 8 7 16 2 1 20 50 44 12 1 0 6 1 0 18 68 8 156 chain 510722 chr20 63025520 + 10139715 10146195 L1PA6 6164 + 0 6160 6095 147 5 6 296 8 0 120 1 0 135 0 1 86 0 17 278 0 3 166 0 1 141 0 1 203 2 0 362 0 1 146 5 0 115 0 2 98 21 0 20 0 10 873 0 6 541 0 3 475 331 0 390 1 0 751 1 3 61 0 1 701 chain 3176 chr20 63025520 + 10156689 10156725 MLT1H 522 - 432 468 221410 36 chain 24851 chr20 63025520 + 10238088 10238382 AluSp 311 + 7 305 105621 19 0 3 141 0 1 134 chain 6589 chr20 63025520 + 10250384 10250541 MER58B 340 - 145 315 180549 71 25 30 20 27 35 14 chain 100999 chr20 63025520 + 10267711 10268817 L1PA3long 6157 + 5050 6157 36513 68 0 1 1038 chain 4354 chr20 63025520 + 10289228 10289285 L1MB7 1623 - 201 257 202528 47 1 0 9 chain 3709 chr20 63025520 + 10294143 10294311 MLT1H 522 - 353 522 211808 40 110 111 18 chain 4641 chr20 63025520 + 10337739 10337798 Ricksha_c 1012 + 94 152 199184 54 1 0 4 chain 35020 chr20 63025520 + 10339481 10339896 L1PA7 6471 + 6053 6466 76161 171 1 0 91 0 1 142 2 0 8 chain 101284 chr20 63025520 + 10343909 10345185 HSMAR1 1287 + 1 1287 36447 238 4 0 240 1 9 89 8 13 23 0 3 128 1 0 408 2 1 134 chain 66158 chr20 63025520 + 10353176 10353914 L1PA3long 6157 - 1 739 50022 141 1 0 9 1 0 4 0 2 582 chain 129974 chr20 63025520 + 10374959 10376476 SVA_C 1631 - 9 1631 28092 543 0 124 103 4 0 19 0 24 122 40 0 651 0 6 13 3 0 7 1 0 6 1 0 4 chain 6029 chr20 63025520 + 10397456 10397616 MER58A 224 + 32 193 184990 64 71 72 25 chain 15243 chr20 63025520 + 10400148 10400529 MER44B 551 - 23 488 140658 18 1 0 55 7 6 44 1 64 17 78 81 23 51 71 86 chain 25051 chr20 63025520 + 10439526 10440066 L1PA11 4918 - 291 791 104541 16 47 33 11 2 0 13 1 0 15 49 36 15 1 0 13 2 0 12 6 9 5 1 0 42 51 48 23 11 5 204 chain 13183 chr20 63025520 + 10449585 10449763 MER30 238 - 0 201 147536 92 1 7 10 4 21 71 chain 4629 chr20 63025520 + 10520575 10520630 MER5A 189 + 7 62 199310 55 chain 14237 chr20 63025520 + 10542217 10542510 L1PB1 5432 - 41 318 143769 21 1 0 24 2 0 13 9 6 31 13 0 13 8 7 7 1 0 33 5 18 46 6 4 9 6 2 11 1 0 12 1 0 20 chain 4985 chr20 63025520 + 10550386 10550445 MLT1B 390 - 125 184 195303 59 chain 4748 chr20 63025520 + 10677970 10678031 MER5A 189 - 1 62 197937 61 chain 14712 chr20 63025520 + 10684660 10684838 MSTA 426 + 228 408 142230 141 0 1 25 0 1 12 chain 9179 chr20 63025520 + 10755110 10755320 L1MA9 1812 + 48 255 164659 20 2 0 38 75 74 75 chain 19684 chr20 63025520 + 10773392 10773721 THE1B 368 + 0 339 128147 44 41 49 18 5 6 55 1 0 28 1 0 9 1 5 26 1 0 99 chain 39095 chr20 63025520 + 10778375 10778818 L1PA6 6164 - 6 449 70610 443 chain 4191 chr20 63025520 + 10778954 10779032 L1ME2z 1083 - 618 699 204676 25 16 17 30 0 2 7 chain 27437 chr20 63025520 + 10799717 10800035 L1P1 4361 - 1263 1581 94855 318 chain 4519 chr20 63025520 + 10800035 10800084 L1P1 4361 - 1008 1057 194393 49 chain 253892 chr20 63025520 + 10800084 10803113 L1PA7 6471 + 3437 6466 16035 66 2 0 20 5 0 485 0 1 659 0 4 685 1 0 257 0 4 80 0 2 758 3 0 8 chain 10888 chr20 63025520 + 10839713 10839835 L1PA7 6471 - 4 126 156628 122 chain 146018 chr20 63025520 + 10867428 10869231 L1PA7 6471 - 1 1817 25170 143 18 20 11 0 1 575 0 1 89 11 10 425 0 9 193 2 3 336 chain 9669 chr20 63025520 + 10895562 10895722 L1PB4 2604 + 2387 2552 162248 19 0 1 67 28 32 46 chain 309558 chr20 63025520 + 10910314 10914124 L1PA7 6471 + 2656 6469 13021 37 8 2 807 0 1 20 1 0 313 3 0 182 5 3 408 0 17 508 0 1 669 2 0 72 0 1 6 0 1 40 8 6 59 0 3 301 0 1 151 0 1 40 8 4 13 5 0 133 0 2 11 chain 76581 chr20 63025520 + 10949110 10949960 L1PA4 6152 - 0 849 45174 258 1 0 591 chain 25064 chr20 63025520 + 10990254 10990548 AluSp 311 - 12 309 104486 205 0 3 89 chain 112250 chr20 63025520 + 11068888 11070235 L1PA7 6471 + 5105 6467 33600 314 0 9 193 11 14 74 5 6 416 0 1 86 0 1 248 chain 109019 chr20 63025520 + 11096757 11097967 L1PA4 6152 - 12 1222 34435 1210 chain 518394 chr20 63025520 + 11127358 11133864 L1PA7 6471 - 5 6468 5336 7 2 0 311 11 12 1187 1 0 53 0 1 223 0 4 273 97 3 396 0 1 106 6 13 121 4 1 5 0 1 140 1 2 76 2 1 350 0 11 1919 0 14 416 4 19 175 5 12 7 7 0 177 16 18 229 28 22 6 0 6 145 chain 25332 chr20 63025520 + 11161770 11162138 THE1B 368 + 0 368 103064 14 6 5 84 19 20 46 6 5 81 0 1 112 chain 8479 chr20 63025520 + 11193874 11194003 MER5A1 166 + 0 130 168409 39 1 0 4 0 1 31 9 10 45 chain 24654 chr20 63025520 + 11236897 11237414 L1PB1 5432 - 10 417 106699 31 1 0 21 1 0 24 2 0 15 1 0 4 3 1 17 14 7 6 2 0 14 1 0 45 1 0 16 2 1 12 1 0 40 2 0 9 2 0 3 2 0 10 1 0 12 1 0 19 5 0 12 79 0 41 3 5 42 chain 49986 chr20 63025520 + 11237422 11238250 L1PB 1623 + 775 1575 59021 135 4 5 76 16 19 169 0 1 93 20 17 10 2 0 146 1 0 7 2 1 29 95 69 23 chain 3176 chr20 63025520 + 11260078 11260133 L1MB8 1703 - 250 303 221400 24 1 0 4 3 2 23 chain 5417 chr20 63025520 + 11281660 11281744 L1MB8 1703 + 1493 1577 190824 47 0 1 4 8 7 25 chain 339024 chr20 63025520 + 11338951 11343529 L1PA8A 6298 - 10 4278 11921 128 5 6 664 2 1 176 0 1 637 0 2 44 0 1 149 1 2 49 0 1 165 314 0 229 0 1 101 0 4 42 9 15 111 14 16 45 0 1 295 3 4 774 0 1 90 68 46 139 2 1 310 1 6 11 chain 3606 chr20 63025520 + 11378969 11379057 Charlie4a 502 - 239 329 213556 34 33 35 21 chain 8559 chr20 63025520 + 11391369 11391475 LTR54 533 + 0 107 167969 71 0 1 35 chain 225726 chr20 63025520 + 11400915 11403726 L1PA7 6471 - 2 2788 17544 10 3 0 104 0 1 86 0 10 459 18 29 70 0 2 70 0 4 947 0 8 61 0 2 27 0 1 7 1 0 39 1 0 314 66 0 26 0 7 502 chain 4590 chr20 63025520 + 11403138 11403188 L1PA7 6471 + 3696 3746 199741 50 chain 2768 chr20 63025520 + 11409068 11409101 L1MA8 2339 - 146 179 229210 33 chain 3531 chr20 63025520 + 11462404 11462600 L1MA3 4352 + 4137 4325 214848 21 113 108 16 8 6 28 1 0 9 chain 7701 chr20 63025520 + 11466135 11466499 L1PA15 4387 - 21 324 172934 9 1 0 16 73 35 12 15 4 19 20 17 26 13 12 10 4 0 22 6 5 18 63 61 37 chain 12058 chr20 63025520 + 11484286 11484441 L1PB2 3958 - 3504 3659 151953 155 chain 78103 chr20 63025520 + 11486792 11488429 L1PB2 3958 + 2494 3748 44462 273 370 0 85 2 0 72 1 0 11 46 45 21 0 14 66 1 0 37 42 43 94 24 10 42 2 0 56 1 0 13 10 6 25 0 4 17 1 2 10 1 0 11 4 0 94 1 0 73 1 0 44 17 17 69 chain 23427 chr20 63025520 + 11487073 11487431 THE1D 372 + 7 372 113492 100 0 1 52 0 3 6 52 55 148 chain 122800 chr20 63025520 + 11493470 11494853 SVA_C 1631 - 14 1615 30115 536 0 170 47 1 0 8 4 0 136 3 0 37 0 37 595 2 21 14 chain 29744 chr20 63025520 + 11552926 11553340 L1PA8 5853 + 5437 5853 85682 127 1 0 6 0 9 31 2 0 68 2 1 9 1 2 5 4 0 5 0 2 38 2 1 19 1 0 93 chain 24094 chr20 63025520 + 11576115 11576440 THE1A 353 - 0 335 109773 209 0 1 35 2 0 33 4 15 42 chain 124411 chr20 63025520 + 11576470 11578037 THE1A-int 1579 - 9 1579 29569 516 0 1 167 0 3 90 2 1 193 5 2 395 2 26 8 24 0 141 0 3 24 chain 27200 chr20 63025520 + 11578037 11578380 THE1A 353 - 0 353 95597 124 12 21 123 0 1 84 chain 39275 chr20 63025520 + 11588255 11588788 MER41A 554 + 0 554 70360 120 11 22 255 1 0 30 1 2 35 0 10 80 chain 28930 chr20 63025520 + 11599395 11599706 AluYb8 318 - 7 318 89329 311 chain 567033 chr20 63025520 + 11613427 11619452 L1HS 6032 + 4 6030 85 907 0 1 5118 chain 4754 chr20 63025520 + 11627995 11628080 MER52D 1964 + 1113 1196 197867 38 23 21 24 chain 8255 chr20 63025520 + 11638190 11638601 L1MA9 1812 + 1359 1710 169649 29 1 0 27 3 0 6 1 0 36 1 0 16 257 204 28 1 0 5 chain 5602 chr20 63025520 + 11654541 11654608 MLT2C1 407 + 0 67 189065 67 chain 18186 chr20 63025520 + 11664710 11665048 THE1D 372 - 42 372 132368 84 15 15 37 0 2 7 22 19 82 37 28 41 1 3 12 chain 21985 chr20 63025520 + 11678601 11678880 AluSp 311 + 10 295 120291 137 1 8 19 1 0 121 chain 22803 chr20 63025520 + 11680522 11680812 AluSg7 307 + 5 292 116561 120 1 2 101 5 1 63 chain 31241 chr20 63025520 + 11688781 11689250 LTR2B 499 + 8 499 82096 5 0 1 57 1 0 39 0 7 14 55 67 94 0 2 8 0 2 13 1 0 182 chain 284361 chr20 63025520 + 11709446 11713399 L1PA10 4194 + 271 4148 14395 16 1 0 7 57 31 10 10 8 11 1 0 9 56 30 7 0 9 5 0 2 68 2 0 343 0 7 84 14 15 229 7 6 200 0 1 47 0 1 26 2 1 9 3 4 189 0 2 440 1 0 79 23 5 423 0 3 25 0 2 94 0 1 23 0 1 85 1 0 134 30 3 80 0 1 315 0 1 715 1 0 32 7 6 32 chain 111175 chr20 63025520 + 11743173 11744435 L1PA5 6144 - 0 1259 33889 856 0 1 62 4 0 340 chain 80745 chr20 63025520 + 11744435 11745342 L1PA5 6144 + 3959 4870 43291 382 0 4 525 chain 8660 chr20 63025520 + 11758195 11758302 MER5A1 166 + 27 134 167428 107 chain 18950 chr20 63025520 + 11799507 11799738 7SK 245 - 13 244 130225 231 chain 27691 chr20 63025520 + 11822295 11822651 L1PA6 6164 - 16 373 94072 140 4 5 164 5 6 37 1 0 5 chain 24917 chr20 63025520 + 11835072 11835352 AluY 311 + 5 286 105236 127 0 1 153 chain 3167 chr20 63025520 + 11863412 11863448 MER5B 177 + 138 174 221604 36 chain 153718 chr20 63025520 + 11863790 11865650 L1PA7 6471 - 6 1868 24124 11 7 4 87 5 1 47 1 3 154 0 1 45 2 0 168 0 1 4 2 1 317 1 0 205 1 0 70 1 0 4 0 1 392 1 0 99 0 2 127 0 1 46 0 8 63 chain 16246 chr20 63025520 + 11884788 11885127 MSTA 426 - 34 426 137627 75 0 2 5 103 119 43 5 40 108 chain 7630 chr20 63025520 + 11952001 11952109 Tigger2a 444 + 278 387 173354 82 4 5 22 chain 2601 chr20 63025520 + 11967107 11967134 LTR16C 481 + 439 466 231691 27 chain 3891 chr20 63025520 + 11972464 11972514 MER53 195 - 3 53 209001 50 chain 4777 chr20 63025520 + 11980144 11980221 MADE1 96 - 0 94 197607 30 10 27 37 chain 5925 chr20 63025520 + 12024410 12024486 LTR49 580 - 505 580 185943 60 1 0 15 chain 2461 chr20 63025520 + 12042605 12042641 MLT1C 463 + 10 47 233567 15 1 2 20 chain 29253 chr20 63025520 + 12052087 12052397 AluYa5 310 - 0 310 87777 310 chain 5947 chr20 63025520 + 12102157 12102223 THE1D 372 + 239 305 185714 66 chain 537722 chr20 63025520 + 12104362 12110348 L1PA3long 6157 - 0 6152 3201 1663 0 2 1778 0 14 928 1 14 854 8 136 278 0 8 117 0 1 163 1 0 48 0 1 147 chain 74769 chr20 63025520 + 12126629 12127848 L1PA11 4918 - 289 1481 46125 17 48 34 11 2 0 13 1 0 15 13 9 10 45 35 10 2 0 67 1 0 14 20 22 47 2 0 165 1 0 4 0 1 146 4 6 167 13 17 65 0 1 62 7 8 12 6 5 65 1 2 58 1 0 104 chain 80968 chr20 63025520 + 12127850 12128895 L1PA11 4918 + 2320 3376 43206 224 2 0 394 5 19 202 18 17 200 chain 2401 chr20 63025520 + 12134419 12134789 MLT1F1 559 - 175 555 234216 24 317 328 17 1 0 11 chain 103460 chr20 63025520 + 12148747 12150194 L1PA14 3548 - 83 1496 35879 10 6 0 41 1 0 9 14 12 16 4 2 32 16 11 111 1 0 88 5 2 17 5 1 108 9 5 47 2 0 14 9 7 244 2 1 151 6 5 85 2 1 4 0 1 388 chain 68390 chr20 63025520 + 12171977 12172760 L1PA5 6144 - 0 787 49095 11 1 5 771 chain 26193 chr20 63025520 + 12221237 12221563 L1PA7 6471 + 6142 6462 99226 166 0 1 147 7 0 6 chain 52025 chr20 63025520 + 12232553 12233295 L1PA13 3608 - 123 847 57609 17 1 0 20 2 0 5 2 0 47 2 0 7 1 0 33 10 9 12 1 0 62 8 6 107 1 0 193 6 1 205 chain 3525 chr20 63025520 + 12237677 12237715 MLT1K 546 - 341 379 214966 38 chain 53128 chr20 63025520 + 12253780 12254440 THE1A-int 1579 - 916 1579 56942 223 1 2 154 0 2 282 chain 25908 chr20 63025520 + 12254460 12254795 THE1A 353 - 20 353 100389 41 1 0 182 2 1 109 chain 23766 chr20 63025520 + 12283389 12283714 THE1C 375 - 46 375 111675 115 8 11 10 6 7 186 chain 30184 chr20 63025520 + 12320914 12321348 LTR7Y 441 - 0 441 84236 197 68 84 57 9 0 103 chain 298176 chr20 63025520 + 12322613 12326153 HERVH-int 3825 - 0 3825 13522 137 0 2 153 0 1 194 8 218 568 1 3 833 4 31 375 2 0 531 9 8 41 2 1 16 2 22 60 3 0 12 1 0 15 28 0 24 2 1 9 1 0 25 0 56 244 0 5 240 chain 29717 chr20 63025520 + 12326153 12326587 LTR7Y 441 - 0 441 85776 197 68 84 57 9 0 103 chain 326317 chr20 63025520 + 12340215 12343821 L1PA3long 6157 - 0 3609 12331 61 1 3 143 3 0 281 0 1 1319 0 3 1169 1 0 570 0 1 58 chain 105293 chr20 63025520 + 12350041 12351217 L1PA3long 6157 + 4979 6157 35429 380 0 1 565 0 1 231 chain 3767 chr20 63025520 + 12389882 12389924 MLT1J2 417 - 128 170 210858 42 chain 376548 chr20 63025520 + 12403329 12407892 L1PA7 6471 - 4 4573 10864 221 2 0 391 0 2 151 0 2 79 1 0 18 0 4 1701 7 9 53 0 1 332 2 0 260 4 0 6 8 12 109 11 1 129 1 0 276 1 5 255 0 2 94 0 5 451 chain 533491 chr20 63025520 + 12423787 12429786 L1PA3long 6157 - 4 6157 3770 334 0 1 86 0 12 1758 0 2 2207 1 6 427 0 1 413 11 139 401 0 1 59 6 7 42 0 1 103 0 1 81 0 1 70 chain 114648 chr20 63025520 + 12430255 12432144 THE1B-int 1605 + 9 1605 32903 26 0 2 395 7 32 34 336 22 139 1 0 103 13 1 19 15 19 473 9 10 102 0 1 100 7 8 110 chain 314582 chr20 63025520 + 12458156 12461770 L1PA5 6144 + 2538 6142 12825 824 12 8 244 1 0 86 7 6 1505 0 1 77 1 0 95 3 0 94 6 9 262 4 0 393 chain 71635 chr20 63025520 + 12467633 12468413 L1PA3long 6157 - 1 781 47635 780 chain 529955 chr20 63025520 + 12472272 12478390 L1PA5 6144 + 3 6140 4191 117 0 14 408 1 0 361 0 1 389 0 1 673 5 1 209 9 11 372 0 2 798 5 0 302 0 1 431 0 1 1443 1 8 325 0 1 19 1 0 249 chain 241628 chr20 63025520 + 12516490 12520099 L1PBa 3878 + 216 3748 16689 17 7 5 110 0 2 42 1 2 129 1 0 88 13 11 77 0 3 173 3 0 32 1 2 70 89 91 5 2 0 124 32 33 215 0 2 173 2 0 268 1 6 12 9 8 131 0 1 156 70 0 316 7 8 109 6 0 70 0 1 333 24 23 43 0 3 5 25 12 81 1 0 5 14 7 104 4 5 76 0 1 12 10 15 58 0 1 106 10 16 101 2 1 21 2 0 11 chain 68157 chr20 63025520 + 12523251 12524699 L1M1 2793 - 989 2283 49178 67 0 1 37 38 45 109 0 3 271 4 0 18 6 2 16 5 9 12 13 11 24 1 0 115 0 2 59 1 0 22 0 2 62 65 24 37 28 25 29 2 0 20 22 17 20 60 43 43 138 60 10 3 0 8 4 3 10 10 6 9 2 0 10 2 1 9 2 1 12 3 0 10 chain 26804 chr20 63025520 + 12526863 12527154 L1PA4 6152 - 1 292 96965 291 chain 29131 chr20 63025520 + 12539151 12539463 AluYa5 310 + 0 309 88405 97 3 0 212 chain 133484 chr20 63025520 + 12541832 12543418 L1PA7 6471 + 4862 6459 27324 759 5 8 690 1 2 72 0 7 59 chain 6601 chr20 63025520 + 12561631 12561719 L1PA16 3655 - 77 167 180449 29 0 2 5 1 0 25 0 1 28 chain 549238 chr20 63025520 + 12563154 12569178 L1PA2 6032 + 1 6031 1545 2643 0 5 3194 0 1 187 chain 13583 chr20 63025520 + 12569988 12570172 MSTA 426 - 242 426 146041 36 9 8 113 0 1 26 chain 4138 chr20 63025520 + 12593167 12593232 MER58A 224 + 26 83 205390 26 8 0 31 chain 181203 chr20 63025520 + 12614623 12616595 L1PA2 6032 + 4053 6025 20881 1972 chain 39748 chr20 63025520 + 12635742 12636257 L1PA8 5853 + 5343 5853 69689 221 1 0 44 2 0 16 0 1 52 7 6 57 2 1 19 1 0 93 chain 501268 chr20 63025520 + 12643329 12648893 L1PA3long 6157 + 10 6149 6768 84 0 526 570 0 3 2454 0 39 1315 0 1 308 0 4 611 0 1 168 0 1 54 chain 14682 chr20 63025520 + 12681282 12681849 LTR9B 643 + 6 581 142315 23 1 0 11 271 252 143 11 25 6 7 0 17 18 38 13 20 21 26 chain 3969 chr20 63025520 + 12687098 12687149 MADE1 96 + 46 96 207852 15 1 0 35 chain 4910 chr20 63025520 + 12690367 12690466 L1MB3 1562 - 261 360 196154 42 21 25 6 4 0 26 chain 33725 chr20 63025520 + 12733592 12734039 LTR7 482 + 0 482 78053 95 2 1 128 1 2 25 1 2 5 0 32 129 12 14 49 chain 39425 chr20 63025520 + 12734466 12734921 LTR7 482 + 0 482 70124 52 4 0 183 0 31 216 chain 294152 chr20 63025520 + 12734923 12738564 HERVH-int 3825 + 0 3825 13758 243 0 5 128 0 4 114 40 0 36 0 1 8 9 3 28 1 0 10 1 0 7 2 1 17 0 13 13 3 0 7 21 0 10 22 1 42 2 22 16 2 1 41 9 8 531 2 0 375 4 31 732 0 1 671 9 219 193 0 1 198 3 2 5 0 1 86 chain 2116 chr20 63025520 + 12735408 12735441 HERVH-int 3825 + 515 543 234503 17 5 0 11 chain 40788 chr20 63025520 + 12739826 12740281 LTR7 482 + 0 482 68192 52 4 0 180 0 31 219 chain 26801 chr20 63025520 + 12740301 12740631 THE1A 353 - 13 353 96981 209 12 22 109 chain 50913 chr20 63025520 + 12753372 12754026 L1PB1 5432 - 329 986 58358 104 5 8 545 chain 567675 chr20 63025520 + 12781665 12787692 L1HS 6032 - 2 6029 52 6027 chain 5432 chr20 63025520 + 12791809 12791901 L1MA4A 3247 + 600 692 190684 26 14 13 5 0 1 47 chain 23213 chr20 63025520 + 12793117 12793390 AluYk4 311 + 9 300 114628 238 4 22 31 chain 95034 chr20 63025520 + 12798675 12799752 L1PA4 6152 - 0 1083 38082 6 0 5 143 1 2 927 chain 3760 chr20 63025520 + 12802296 12802594 LTR16C 481 - 20 330 210963 22 44 50 31 179 185 22 chain 21364 chr20 63025520 + 12802976 12803243 L1PA8A 6298 - 7 276 122638 112 3 0 25 0 5 127 chain 25419 chr20 63025520 + 12810586 12810874 AluY 311 + 15 304 102594 117 0 1 171 chain 44802 chr20 63025520 + 12838237 12838997 LTR12D 1347 + 405 1347 63288 29 0 150 109 88 15 110 27 41 13 11 12 36 7 9 65 20 108 245 chain 28716 chr20 63025520 + 12871617 12871971 THE1A 353 + 0 353 90272 109 2 1 243 chain 14279 chr20 63025520 + 12877954 12878195 MER44A 345 - 26 267 143621 35 32 31 138 5 8 6 2 0 23 chain 9338 chr20 63025520 + 12883535 12883817 L1PB4 2604 - 73 362 163864 62 114 112 17 1 6 10 1 0 25 11 13 15 0 3 26 chain 41478 chr20 63025520 + 12903185 12903752 MSTA-int 1630 + 1040 1612 67313 16 0 1 287 4 6 46 26 29 91 5 4 92 chain 45834 chr20 63025520 + 12907006 12907570 LTR19B 566 + 0 566 62192 302 1 0 132 5 6 53 0 5 16 3 0 52 chain 7039 chr20 63025520 + 12920825 12921080 L1MA4A 3247 - 68 333 177186 31 66 59 49 4 39 20 8 6 4 1 0 16 26 16 17 5 0 8 chain 162189 chr20 63025520 + 12923399 12925836 L1PB1 5432 + 3018 5420 23034 62 5 6 146 9 12 331 9 10 144 16 10 31 12 12 107 5 6 68 13 13 206 0 1 252 0 1 109 0 1 75 3 0 93 1 0 90 3 11 288 5 0 9 2 0 5 2 0 3 1 0 18 37 29 53 8 7 9 1 0 32 100 81 21 1 0 20 2 1 8 1 0 21 chain 66692 chr20 63025520 + 12933727 12934456 L1PA3long 6157 - 15 744 49791 729 chain 4256 chr20 63025520 + 12934610 12934659 L1PB1 5432 + 3911 3960 203789 49 chain 62847 chr20 63025520 + 12934660 12935453 L1PB1 5432 + 3962 4768 51514 45 0 10 180 0 1 4 1 0 13 1 0 130 5 11 267 3 0 84 0 1 60 chain 37125 chr20 63025520 + 12935492 12936216 L1PB1 5432 + 4799 5420 73342 13 0 4 77 3 1 206 15 0 14 56 0 24 1 0 9 1 0 5 21 15 53 6 5 11 1 0 44 1 0 9 21 8 28 13 10 11 5 1 23 1 0 21 2 1 12 1 0 16 chain 10902 chr20 63025520 + 12940771 12940966 L1PB1 5432 + 5114 5295 156580 20 1 0 13 1 0 11 7 3 6 2 0 53 25 20 41 1 0 14 chain 169633 chr20 63025520 + 12953306 12955754 L1PB1 5432 - 28 2438 22100 13 1 0 4 1 0 17 1 0 24 2 0 14 9 6 18 18 8 4 1 0 13 3 2 45 18 16 42 11 9 10 5 1 14 8 6 24 31 11 169 8 7 213 0 1 92 3 0 156 0 1 248 0 1 4 1 0 100 0 3 152 1 0 228 1 6 15 0 1 4 1 0 86 3 4 108 3 4 10 0 4 318 6 7 9 0 1 54 1 0 103 chain 3863 chr20 63025520 + 12973418 12973461 L1MA4 2864 - 55 98 209396 43 chain 13814 chr20 63025520 + 12998198 12998382 MER30 238 + 36 238 145199 72 4 22 108 chain 12435 chr20 63025520 + 13028692 13028853 L1P3 4156 + 2667 2825 150513 12 3 4 113 4 0 29 chain 154132 chr20 63025520 + 13032723 13034634 L1P3 4156 + 0 1898 24079 251 2 1 68 1 0 82 18 0 371 2 1 335 8 9 116 1 0 124 2 0 5 0 9 185 0 1 340 chain 17789 chr20 63025520 + 13041576 13041801 L1PB4 2604 - 326 551 133448 134 0 1 61 1 0 29 chain 46936 chr20 63025520 + 13125794 13126538 L1PREC2 3366 + 2227 2951 61274 56 0 4 18 3 1 39 0 1 102 8 9 260 4 2 32 3 1 54 2 1 43 1 0 4 68 52 14 9 7 24 chain 19266 chr20 63025520 + 13144553 13144764 L1PA4 6152 - 1 212 129330 211 chain 29424 chr20 63025520 + 13169836 13170287 L1PA17 2846 + 2244 2682 86968 257 25 20 14 1 0 37 4 2 18 2 0 8 1 0 31 2 1 18 8 7 25 chain 6531 chr20 63025520 + 13172589 13172677 MSTD 398 + 292 381 180996 31 1 2 56 chain 4128 chr20 63025520 + 13175782 13175830 MADE1 96 + 48 96 205533 48 chain 55509 chr20 63025520 + 13217113 13217773 THE1A-int 1579 - 0 662 55411 9 0 1 425 1 2 225 chain 4534 chr20 63025520 + 13264673 13264779 MIRb 242 + 69 174 200412 44 32 31 19 0 1 4 1 0 6 chain 15874 chr20 63025520 + 13267764 13268033 THE1B 368 - 0 273 138728 128 1 0 10 4 3 13 12 17 28 1 0 33 17 16 6 0 3 16 chain 4310 chr20 63025520 + 13277879 13277932 MER92B 628 - 574 627 203101 53 chain 128505 chr20 63025520 + 13307358 13309101 L1PA11 4918 + 2918 4629 28453 261 0 1 187 0 1 140 0 1 4 1 0 15 22 27 66 0 1 31 0 1 6 3 0 30 0 1 244 0 1 392 7 0 65 2 1 81 2 0 12 2 1 16 50 37 13 1 0 13 2 0 11 31 21 7 2 0 4 1 0 19 chain 40669 chr20 63025520 + 13338526 13338977 LTR7 482 + 0 482 68339 230 0 31 221 chain 207790 chr20 63025520 + 13338979 13341634 HERVH-int 3825 + 0 3825 18657 212 0 11 142 66 0 167 68 0 38 1 0 10 1 0 24 29 0 8 11 48 33 0 1056 257 0 4 438 0 1 122 12 25 524 8 218 373 0 3 111 chain 40007 chr20 63025520 + 13342885 13343336 LTR7 482 + 0 482 69310 266 0 31 185 chain 24884 chr20 63025520 + 13354996 13355284 AluYk4 311 - 14 301 105445 91 1 0 196 chain 540821 chr20 63025520 + 13355747 13362174 L1PA7 6471 - 16 6466 2687 743 7 12 84 0 3 315 0 1 317 1 0 25 2 0 277 7 11 282 0 2 886 1 0 70 0 1 612 0 1 1077 8 12 151 1 2 1029 0 1 126 4 5 257 19 22 126 chain 25044 chr20 63025520 + 13413631 13413945 L1PA7 6471 - 8 320 104574 75 5 4 185 1 0 48 chain 224124 chr20 63025520 + 13417660 13420309 L1PA4 6152 + 3643 6152 17645 992 145 0 1506 0 5 6 chain 28934 chr20 63025520 + 13437597 13437923 L1PA6 6164 + 5834 6160 89302 326 chain 142161 chr20 63025520 + 13452350 13454135 L1PA6 6164 + 0 6156 25792 52 6 7 175 0 4364 162 0 8 893 2 1 13 1 0 327 6 6 148 chain 5280 chr20 63025520 + 13458794 13458859 HSMAR1 1287 + 1218 1283 192209 65 chain 13161 chr20 63025520 + 13459021 13459184 L1PB4 2604 + 2389 2552 147608 163 chain 92257 chr20 63025520 + 13461868 13463267 L1MA2 4263 - 150 1552 38889 8 1 0 39 15 8 40 1 4 39 21 19 26 6 7 117 45 42 102 5 4 72 6 2 86 1 0 39 0 4 100 0 1 183 1 5 142 18 26 85 4 5 13 1 3 125 1 0 15 2 1 40 chain 88878 chr20 63025520 + 13464376 13465782 L1PA7 6471 + 5381 6465 40053 240 1 0 79 12 14 389 323 0 362 chain 4813 chr20 63025520 + 13470452 13470515 L1MB3 1562 - 38 101 197195 63 chain 4700 chr20 63025520 + 13490211 13490266 L1PREC2 3366 - 773 828 198540 55 chain 130108 chr20 63025520 + 13492263 13493765 L1PA5 6144 - 14 1516 28065 81 5 0 17 1 0 42 0 1 684 4 8 126 0 1 542 chain 21602 chr20 63025520 + 13499438 13499825 L1PA16 3655 + 3205 3588 121762 77 26 25 50 11 12 23 42 41 144 3 0 11 chain 213908 chr20 63025520 + 13500032 13502428 L1PA4 6152 + 3751 6141 18232 6 0 1 2105 8 0 133 0 1 144 chain 5147 chr20 63025520 + 13533892 13534001 Tigger6a 1079 + 933 1050 193583 46 27 34 25 1 2 10 chain 5244 chr20 63025520 + 13545274 13545365 L1MB3 1562 + 128 221 192582 13 5 0 6 0 5 9 5 7 53 chain 5820 chr20 63025520 + 13553879 13553995 MLT1A0 366 + 25 135 186948 8 1 0 14 26 22 19 1 0 47 chain 527928 chr20 63025520 + 13573884 13580334 L1PA6 6164 + 0 6162 4410 210 12 18 750 1 0 112 0 3 138 1 2 861 0 1 230 0 1 538 305 0 271 1 0 55 0 1 348 0 1 414 0 1 688 0 1 35 1 0 512 1 0 125 0 7 465 0 1 365 3 0 8 chain 7109 chr20 63025520 + 13581943 13582161 L1MC3 1789 + 1186 1369 176693 17 76 60 48 3 0 10 25 9 39 chain 24888 chr20 63025520 + 13615404 13615697 AluSp 311 + 11 304 105417 293 chain 10142 chr20 63025520 + 13633666 13633794 LTR39 781 - 606 735 159886 29 0 1 99 chain 4937 chr20 63025520 + 13650254 13650310 L1MCa 1829 - 942 998 195827 56 chain 13048 chr20 63025520 + 13654701 13654909 THE1B 368 + 151 368 148041 21 2 1 26 34 44 125 chain 9294 chr20 63025520 + 13665794 13665953 MLT1A1 405 - 16 231 164091 95 35 89 18 0 2 11 chain 2947 chr20 63025520 + 13673039 13673070 MLT2B2 565 + 527 558 226180 31 chain 5121 chr20 63025520 + 13681168 13681230 MSTB2 466 - 391 452 193862 52 1 0 9 chain 95770 chr20 63025520 + 13686203 13687276 L1PA6 6164 + 3973 5046 37880 1073 chain 22273 chr20 63025520 + 13687276 13687556 L1PA6 6164 + 5049 5312 119021 195 23 6 62 chain 73913 chr20 63025520 + 13687556 13688412 L1PA6 6164 + 5316 6162 46559 736 1 0 100 9 0 10 chain 8387 chr20 63025520 + 13723459 13723697 L1MB8 1703 - 57 273 168917 16 9 4 21 51 23 35 12 24 13 9 10 65 2 0 5 chain 8153 chr20 63025520 + 13734456 13734569 MER85 139 - 0 135 170207 40 8 30 65 chain 104367 chr20 63025520 + 13740827 13742034 SVA_D 2077 + 460 2069 35649 430 0 396 28 0 1 24 1 2 14 5 6 28 16 19 46 0 1 78 2 1 535 chain 2947 chr20 63025520 + 13754372 13754403 U2 167 - 136 167 226135 31 chain 27311 chr20 63025520 + 13852903 13853250 THE1C 375 + 32 375 95239 93 8 5 220 1 0 25 chain 5550 chr20 63025520 + 13856068 13856137 MIR 256 - 118 187 189563 69 chain 28305 chr20 63025520 + 13863458 13863765 AluYa5 310 - 7 310 91924 176 4 0 127 chain 17894 chr20 63025520 + 13882617 13882839 MER66B 489 - 228 450 133118 222 chain 5686 chr20 63025520 + 13882916 13883134 L1MC5 759 - 369 609 188236 50 60 91 17 2 0 9 41 37 27 1 0 4 2 0 5 chain 4699 chr20 63025520 + 13914179 13914249 L1MB8 1703 - 194 266 198544 23 3 5 44 chain 14823 chr20 63025520 + 13914634 13914985 L1PB1 5432 - 9 327 141874 8 1 0 10 2 0 4 0 1 9 1 0 21 1 0 24 2 0 12 56 40 13 1 0 45 1 0 14 3 2 43 25 19 12 2 1 7 1 0 33 chain 78102 chr20 63025520 + 13932278 13933376 MER61-int 3695 + 2029 3145 44463 48 0 23 30 0 1 32 0 2 61 11 15 28 36 19 318 1 2 5 2 0 10 0 1 97 6 8 36 8 13 85 1 0 37 1 0 38 2 1 92 0 1 113 chain 4653 chr20 63025520 + 13936422 13936493 MADE1 96 + 9 96 199030 28 5 21 38 chain 95028 chr20 63025520 + 13938972 13940528 HSMAR1 1287 + 8 1287 38084 58 4 3 62 1 9 42 0 1 147 299 0 218 53 66 260 0 1 412 chain 23312 chr20 63025520 + 13945093 13945369 AluSp 311 - 7 281 114142 232 2 0 42 chain 3126 chr20 63025520 + 13967445 13967483 MADE1 96 + 1 39 222417 38 chain 5088 chr20 63025520 + 13999795 13999894 LTR8 732 - 40 137 194193 44 26 24 29 chain 263248 chr20 63025520 + 14004479 14008499 L1PA10 4194 - 33 4000 15526 11 1 0 33 16 13 299 0 12 81 12 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42 5 0 2 32 5 9 138 chain 76026 chr20 63025520 + 14717615 14718516 L1PA7 6471 - 14 920 45466 141 2 0 5 1 4 634 0 1 55 0 3 63 chain 27724 chr20 63025520 + 14723401 14723711 AluYa5 310 - 0 310 93954 310 chain 57628 chr20 63025520 + 14748299 14748982 L1PA7 6471 - 12 697 54172 198 0 1 104 0 1 381 chain 526143 chr20 63025520 + 14786808 14793217 L1PA7 6471 + 6 6461 4576 236 6 21 351 0 1 45 1 0 510 10 11 47 0 1 134 0 1 395 2 1 223 0 10 638 3 1 257 0 4 591 1 2 5 2 0 6 1 0 24 3 2 26 0 4 185 8 5 94 1 0 167 9 8 219 1 0 5 0 1 327 1 3 387 0 1 347 0 1 31 0 8 12 1 0 268 0 2 221 0 1 305 1 8 302 chain 5545 chr20 63025520 + 14954870 14954939 MSTC 436 - 344 414 189609 16 0 1 53 chain 19745 chr20 63025520 + 14964059 14964381 THE1B 368 + 0 344 127970 12 3 1 31 6 21 107 2 1 25 35 45 101 chain 30231 chr20 63025520 + 14980987 14981305 AluYb9 318 + 0 318 84110 318 chain 43261 chr20 63025520 + 14982398 14983115 L1PB1 5432 - 28 811 65104 13 1 0 20 2 1 24 2 0 13 9 6 19 18 8 4 1 0 15 1 0 38 64 148 297 5 3 86 0 1 21 0 2 64 chain 127216 chr20 63025520 + 14997641 14999199 THE1A-int 1579 - 9 1579 28765 1113 1 0 113 0 2 238 0 1 43 8 18 42 chain 17844 chr20 63025520 + 14999310 14999526 MLT2A1 477 - 256 477 133260 48 0 4 26 0 1 142 chain 10765 chr20 63025520 + 15002377 15002569 L1MC2 1988 + 1725 1919 157128 4 0 1 43 34 33 41 4 0 17 0 6 49 chain 6366 chr20 63025520 + 15003497 15003575 U6 107 + 0 78 182272 78 chain 6798 chr20 63025520 + 15006315 15006426 MER20 218 - 26 121 178963 26 19 3 66 chain 7928 chr20 63025520 + 15039035 15039220 MER53 195 - 0 191 171458 26 72 78 87 chain 3588 chr20 63025520 + 15080930 15080974 Tigger5 388 + 301 345 213865 44 chain 3202 chr20 63025520 + 15111992 15112026 MADE1 96 + 57 91 220907 34 chain 310943 chr20 63025520 + 15114964 15118365 L1PA3long 6157 + 2744 6157 12960 515 0 4 1097 0 4 946 0 4 843 chain 92876 chr20 63025520 + 15123160 15124239 L1PA5 6144 - 1 1080 38695 557 3 1 9 1 3 196 1 0 6 0 2 75 1 0 230 chain 14554 chr20 63025520 + 15124495 15124714 MER30 238 - 1 231 142723 34 13 16 62 4 12 106 chain 323187 chr20 63025520 + 15129953 15133795 HERVH-int 3825 - 0 3825 12469 1851 1 0 1128 0 3 64 0 1 13 7 11 36 2 1 18 44 0 43 1 38 14 22 12 12 1 0 10 1 0 36 5 0 31 0 2 168 1 0 333 chain 7455 chr20 63025520 + 15144864 15144959 MER2 342 + 131 227 174420 4 0 1 91 chain 61605 chr20 63025520 + 15155021 15155694 L1PA3long 6157 - 370 1042 52077 409 1 0 263 chain 35592 chr20 63025520 + 15155694 15156084 L1PA3long 6157 + 5767 6157 75422 390 chain 47902 chr20 63025520 + 15175617 15176310 L1PA11 4918 + 3908 4578 60554 420 2 0 65 2 1 20 1 0 60 2 0 13 1 0 21 44 31 15 1 0 13 2 0 11 chain 29819 chr20 63025520 + 15187367 15187681 AluYb8 318 - 4 318 85381 314 chain 32554 chr20 63025520 + 15253683 15254133 MLT2A1 477 + 0 477 79939 141 1 2 26 0 4 108 0 1 8 0 1 5 1 0 66 0 3 20 4 0 18 5 0 14 0 27 33 chain 5253 chr20 63025520 + 15273119 15273180 THE1C 375 - 312 373 192489 61 chain 22189 chr20 63025520 + 15307999 15308357 THE1C 375 - 2 375 119407 24 1 0 10 65 67 189 1 15 68 chain 23042 chr20 63025520 + 15329158 15329533 THE1B 368 - 0 368 115435 128 1 0 10 2 1 15 8 13 32 1 0 66 48 39 64 chain 168090 chr20 63025520 + 15333296 15335148 L1PA4 6152 + 4287 6143 22274 1017 0 4 835 chain 22797 chr20 63025520 + 15358510 15358777 L1PA7 6471 + 6183 6451 116588 173 0 1 94 chain 4043 chr20 63025520 + 15369821 15369882 MER53 195 + 0 66 206756 25 7 12 29 chain 15026 chr20 63025520 + 15406706 15406864 SVA_E 1901 + 1742 1900 141250 158 chain 129916 chr20 63025520 + 15413599 15415450 L1PB2 3958 + 1969 3838 28101 52 0 1 234 39 40 29 0 1 158 14 0 158 8 28 76 8 7 30 0 1 81 2 3 56 1 0 96 0 3 100 0 11 136 0 5 32 2 0 55 1 0 15 2 1 8 0 1 18 0 4 29 2 0 13 4 0 94 1 0 72 1 0 46 1 0 4 0 1 13 2 1 12 0 1 58 2 0 22 1 0 63 chain 28949 chr20 63025520 + 15459910 15460217 AluYa5 310 - 4 310 89226 213 1 0 93 chain 26420 chr20 63025520 + 15471238 15471554 LTR14A 344 - 0 344 98339 74 0 4 72 0 24 170 chain 3778 chr20 63025520 + 15524595 15524640 MLT1H2 457 - 318 363 210696 45 chain 25438 chr20 63025520 + 15539625 15539897 AluYg6 310 + 34 306 102510 272 chain 129803 chr20 63025520 + 15568043 15569625 THE1A-int 1579 - 5 1579 28133 54 4 0 71 2 0 951 4 1 7 0 1 489 chain 29906 chr20 63025520 + 15569625 15569979 THE1A 353 - 0 353 85078 243 1 0 110 chain 6781 chr20 63025520 + 15640299 15640392 MSTB1 431 - 0 94 179098 25 1 2 67 chain 412623 chr20 63025520 + 15674394 15680162 L1PB1 5432 - 23 5413 9728 5 1 0 12 1 0 19 1 0 19 71 54 4 1 0 15 1 0 44 1 0 16 2 1 53 27 20 13 1 0 20 1 0 9 3 2 471 3 0 11 6 5 659 0 1 144 330 0 85 0 7 514 1 0 372 10 1 177 2 1 135 0 1 21 3 0 58 0 1 1041 11 0 3 1 0 46 0 1 283 0 1 320 2 0 343 6 5 50 0 3 53 0 1 4 1 0 67 16 19 140 20 21 19 chain 47939 chr20 63025520 + 15682474 15683150 L1PA16 3655 - 71 740 60533 7 3 0 287 2 0 85 2 1 108 31 30 151 chain 11052 chr20 63025520 + 15768140 15768281 L1PA16 3655 - 86 234 156007 81 1 7 52 0 1 7 chain 56200 chr20 63025520 + 15781234 15781849 SVA_D 2077 + 1463 2077 55019 596 1 0 18 chain 34729 chr20 63025520 + 15788459 15788900 LTR2 463 + 0 463 76574 162 8 29 171 12 13 88 chain 58590 chr20 63025520 + 15790519 15791157 L1PA4 6152 - 9 647 53645 638 chain 85837 chr20 63025520 + 15791157 15792093 L1PA4 6152 + 4565 5501 41218 936 chain 10206 chr20 63025520 + 15802313 15802446 MER2 342 + 113 258 159592 48 0 11 41 0 1 44 chain 25789 chr20 63025520 + 15839533 15839942 Tigger2 2703 - 0 415 100916 17 30 22 90 5 6 36 1 0 29 0 1 131 16 20 12 1 10 41 chain 3854 chr20 63025520 + 15847108 15847154 MER73 639 - 593 639 209573 46 chain 64833 chr20 63025520 + 15854560 15855327 L1PA6 6164 - 2 765 50644 6 5 0 27 0 1 118 1 0 184 0 1 426 chain 64740 chr20 63025520 + 15856781 15857541 L1PA5 6144 - 20 781 50682 127 3 0 5 1 0 4 4 8 24 0 1 592 chain 4950 chr20 63025520 + 15861104 15861412 LTR16C 481 - 66 393 195707 48 235 254 25 chain 28883 chr20 63025520 + 15890159 15890467 AluYa5 310 - 2 310 89527 308 chain 28550 chr20 63025520 + 15903800 15904152 THE1A 353 - 0 353 90963 242 1 0 26 0 2 83 chain 84560 chr20 63025520 + 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16545310 L1PA4 6152 + 5881 6143 112303 206 1 0 56 chain 24773 chr20 63025520 + 16548327 16548608 AluY 311 + 14 294 106038 115 1 0 165 chain 14099 chr20 63025520 + 16608827 16609024 MSTA 426 - 228 425 144225 45 8 10 11 2 0 131 chain 3602 chr20 63025520 + 16615901 16615939 MLT1C 463 + 58 96 213616 38 chain 26320 chr20 63025520 + 16617841 16618148 AluYk4 311 - 17 311 98740 9 13 0 285 chain 107204 chr20 63025520 + 16638435 16639783 L1PA10 4194 - 44 1384 34913 34 3 0 216 1 0 194 0 1 8 6 5 398 15 11 473 chain 7912 chr20 63025520 + 16643762 16643855 L1PA4 6152 + 6061 6152 171568 86 2 0 5 chain 23929 chr20 63025520 + 16650977 16651271 AluSp 311 - 16 311 110760 93 6 7 195 chain 8692 chr20 63025520 + 16651286 16651379 HY3 101 - 0 93 167236 93 chain 25332 chr20 63025520 + 16685555 16685916 THE1B 368 + 0 368 103063 13 2 0 31 0 15 101 15 14 21 2 0 7 2 0 91 1 0 75 chain 118782 chr20 63025520 + 16685916 16687476 THE1B-int 1605 + 0 1594 31501 96 5 4 16 8 7 305 1 26 420 4 5 137 1 0 356 4 15 95 0 14 5 14 0 93 chain 22569 chr20 63025520 + 16687485 16687833 THE1B 368 + 0 356 117723 13 2 0 31 5 20 110 1 0 21 2 0 5 14 12 81 2 1 5 0 1 56 chain 26331 chr20 63025520 + 16701119 16701473 L1PA8 5853 - 0 346 98691 93 1 0 16 1 0 56 1 0 9 2 1 70 2 0 44 1 0 32 2 1 24 chain 41560 chr20 63025520 + 16735079 16735628 MLT2A2 560 + 0 560 67206 183 2 1 217 1 12 59 2 0 5 1 3 10 0 1 69 chain 110599 chr20 63025520 + 16759869 16761100 L1PA5 6144 - 3 1232 34051 470 1 0 552 1 0 207 chain 29721 chr20 63025520 + 16767908 16768456 L1PB1 5432 - 10 527 85754 18 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 14 27 16 16 6 5 37 9 8 11 1 0 50 2 0 10 5 1 14 1 0 10 1 0 13 20 18 153 0 1 44 chain 496417 chr20 63025520 + 16768489 16774622 L1PA6 6164 - 2 6164 7045 108 0 9 51 1 2 68 4 6 263 2 0 256 0 1 20 3 0 186 1 0 4 6 7 265 8 10 263 2 0 430 0 1 127 0 6 375 0 1 4 7 1 508 0 1 452 0 1 410 6 1 139 0 1 997 4 13 86 0 1 45 0 1 4 1 0 80 0 25 423 2 1 312 76 63 134 chain 12962 chr20 63025520 + 16816334 16816610 L1PB1 5432 - 10 262 148383 18 1 0 13 1 0 21 1 0 19 30 25 7 1 0 22 13 1 15 1 0 45 21 19 47 chain 34783 chr20 63025520 + 16816633 16817127 L1PB 1623 + 1042 1524 76501 262 2 1 145 6 4 29 9 5 13 5 1 13 1 0 9 chain 2292 chr20 63025520 + 16819259 16819283 L1PB1 5432 - 172 196 235454 24 chain 4077 chr20 63025520 + 16819304 16819350 L1PB1 5432 - 215 261 206232 46 chain 11170 chr20 63025520 + 16819369 16819501 L1PB 1623 + 1037 1169 155553 132 chain 28215 chr20 63025520 + 16837464 16837762 AluYa5 310 - 12 310 92253 298 chain 36707 chr20 63025520 + 16853357 16853862 L1PA10 4194 - 46 548 73950 32 3 0 73 0 1 5 1 0 91 0 1 61 6 7 80 1 0 105 9 8 38 chain 537677 chr20 63025520 + 16888082 16894215 L1PA5 6144 - 0 6144 3208 256 1 0 401 0 2 491 0 1 392 0 4 98 0 3 164 2 0 5 1 3 823 1 2 638 0 1 288 0 1 258 2 0 584 2 0 695 0 1 165 0 1 39 0 1 827 chain 3976 chr20 63025520 + 16895215 16895264 MER70A 477 + 340 389 207753 49 chain 21566 chr20 63025520 + 16900564 16900921 THE1D 372 + 0 357 121901 54 18 9 82 0 1 42 49 57 112 chain 17856 chr20 63025520 + 16909498 16909888 THE1D 372 + 0 372 133222 24 0 1 21 29 0 20 1 11 17 11 2 91 6 7 12 0 38 7 39 7 23 8 10 49 1 0 6 4 5 21 chain 459389 chr20 63025520 + 16911097 16917235 L1PA8A 6298 + 35 6290 8427 4 1 0 17 33 21 23 4 1 18 20 11 17 2 1 9 2 1 12 1 0 6 1 0 13 2 0 15 7 4 13 2 1 7 1 0 6 1 0 6 2 1 15 5 0 9 2 0 27 17 16 19 8 0 75 3 1 14 30 27 51 0 1 14 1 0 205 0 2 88 4 0 39 5 23 243 0 3 26 0 1 8 0 1 352 14 16 110 0 2 153 0 1 721 5 6 62 0 3 278 0 1 151 0 2 161 0 6 79 1 0 106 0 1 19 17 18 83 2 1 216 6 0 175 2 0 6 0 1 37 0 1 4 1 0 270 7 5 76 0 1 166 9 9 251 1 0 147 0 1 4 14 13 355 0 120 559 0 20 54 0 6 311 chain 18716 chr20 63025520 + 16940868 16941202 THE1B 368 - 11 368 130912 104 73 81 108 5 20 44 chain 19446 chr20 63025520 + 16969973 16970190 L1PA4 6152 + 5934 6151 128833 217 chain 34025 chr20 63025520 + 16973241 16973617 L1PA3long 6157 - 1857 2232 77585 290 1 0 85 chain 162773 chr20 63025520 + 16973617 16975392 L1PA3long 6157 + 4381 6157 22970 925 0 1 850 chain 4152 chr20 63025520 + 16977722 16977804 MER5A1 166 + 40 124 205224 37 7 8 18 5 6 15 chain 39441 chr20 63025520 + 16983970 16984510 MLT2A2 560 - 0 560 70104 64 5 6 73 9 20 191 0 1 4 6 5 16 10 18 162 chain 3770 chr20 63025520 + 16990952 16991040 LTR48B 642 + 72 161 210821 33 34 35 21 chain 8565 chr20 63025520 + 17000533 17000626 L1PA5 6144 - 7 100 167931 93 chain 23967 chr20 63025520 + 17000626 17000888 L1PA5 6144 + 5771 6033 110531 262 chain 86404 chr20 63025520 + 17007601 17008661 MER11B 1079 + 0 1065 41003 264 3 0 94 0 5 39 0 9 355 6 8 154 9 1 136 chain 10122 chr20 63025520 + 17032771 17033369 L1PA12 2803 - 1139 1684 159984 29 244 227 26 2 0 17 4 0 27 52 36 33 14 1 12 80 82 12 3 0 43 chain 37808 chr20 63025520 + 17053814 17054265 L1PA7 6471 - 1282 1733 72166 451 chain 107351 chr20 63025520 + 17054265 17055875 L1PA7 6471 + 5169 6467 34877 276 0 1 4 2 1 49 22 0 125 0 5 66 301 7 434 1 0 330 chain 6668 chr20 63025520 + 17084409 17084480 L1PA4 6152 - 6 77 179918 71 chain 8199 chr20 63025520 + 17088202 17088299 L1PA4 6152 - 1 98 169955 97 chain 33040 chr20 63025520 + 17091623 17092314 L1PREC2 3366 - 318 966 79155 38 6 4 35 37 20 7 1 0 18 74 59 13 3 0 4 1 0 44 1 0 23 2 1 19 25 23 49 24 20 88 3 7 27 1 0 4 0 1 85 0 4 4 4 0 51 chain 551939 chr20 63025520 + 17095438 17101563 L1PA3long 6157 - 0 6148 1199 849 0 4 327 0 1 622 0 4 1571 0 1 1729 0 2 557 0 11 470 chain 29444 chr20 63025520 + 17103463 17103774 AluYa5 310 - 0 310 86889 184 1 0 126 chain 128427 chr20 63025520 + 17119607 17121255 L1PA8 5853 + 4220 5853 28470 49 0 1 261 3 7 398 7 8 33 0 1 31 2 0 73 0 2 37 37 3 440 2 1 43 2 0 74 1 0 54 0 17 7 2 1 92 chain 34513 chr20 63025520 + 17127143 17127557 L1PA7 6471 - 314 745 76885 213 0 15 58 0 2 143 chain 25517 chr20 63025520 + 17127557 17127848 L1PA7 6471 + 6164 6455 102150 291 chain 72601 chr20 63025520 + 17134407 17135196 L1PA4 6152 + 5354 6143 47218 789 chain 48751 chr20 63025520 + 17140338 17140955 L1PA7 6471 - 592 1212 59911 261 12 16 63 1 0 105 0 1 61 2 1 112 chain 50932 chr20 63025520 + 17140955 17141549 L1PA7 6471 + 5877 6469 58351 582 2 0 10 chain 25019 chr20 63025520 + 17141554 17141833 AluY 311 + 20 300 104685 112 0 1 167 chain 26208 chr20 63025520 + 17147582 17147882 AluYk4 311 - 0 300 99169 300 chain 16402 chr20 63025520 + 17165204 17165377 AluYa5 310 + 137 310 137205 173 chain 80510 chr20 63025520 + 17166589 17167556 L1PA6 6164 + 5188 6156 43383 649 1 2 163 0 5 7 10 5 137 chain 8669 chr20 63025520 + 17168166 17168261 U6 107 + 12 107 167363 95 chain 12065 chr20 63025520 + 17169658 17169823 MER30B 195 - 15 186 151921 90 13 19 62 chain 15204 chr20 63025520 + 17187676 17187880 MER41E 591 + 1 215 140767 126 1 0 56 2 13 19 chain 34522 chr20 63025520 + 17237271 17237706 L1PA7 6471 - 2 439 76876 149 7 8 4 0 1 90 1 0 4 0 1 180 chain 34206 chr20 63025520 + 17237706 17238129 L1PA7 6471 + 5593 6021 77340 29 0 6 234 2 1 158 chain 187893 chr20 63025520 + 17257310 17259368 L1PA4 6152 + 4086 6144 20251 2058 chain 22129 chr20 63025520 + 17260176 17260451 AluSp 311 + 8 301 119664 112 7 25 156 chain 8085 chr20 63025520 + 17265137 17265250 LTR54 533 - 0 115 170569 11 0 1 42 1 2 59 chain 11391 chr20 63025520 + 17344654 17344781 L1PA4 6152 + 6013 6140 154738 127 chain 20060 chr20 63025520 + 17352780 17353022 AluSc8 310 + 38 283 126939 90 1 4 151 chain 520545 chr20 63025520 + 17391760 17397823 L1PA6 6164 + 1 6159 5101 132 0 55 221 10 24 21 2 1 105 0 1 311 0 10 4 0 1 185 6 7 1541 0 1 576 1 0 981 1 2 139 1 0 172 1 6 152 1 0 161 0 8 495 1 5 693 7 5 143 chain 3341 chr20 63025520 + 17398875 17398916 MIR 256 - 134 175 218206 41 chain 22149 chr20 63025520 + 17422120 17422467 THE1B 368 - 0 361 119597 125 35 45 30 1 0 21 10 0 87 1 16 37 chain 6414 chr20 63025520 + 17442457 17442588 L1MA3 4352 + 4230 4352 181913 30 2 0 20 13 11 26 1 0 7 10 6 22 chain 5122 chr20 63025520 + 17469489 17469581 LTR50 688 - 13 84 193854 57 21 0 14 chain 25305 chr20 63025520 + 17508092 17508380 AluY 311 + 2 290 103193 288 chain 24516 chr20 63025520 + 17512785 17513079 AluSx 319 + 10 312 107467 59 0 8 235 chain 5627 chr20 63025520 + 17521792 17521856 FAM 185 + 104 168 188796 64 chain 18914 chr20 63025520 + 17525698 17526088 LTR35A 463 - 16 379 130330 100 2 0 4 4 0 20 3 0 10 2 0 13 2 0 11 56 47 18 1 2 11 2 0 41 5 3 37 19 17 29 chain 7721 chr20 63025520 + 17530536 17530631 MSTA 426 - 331 426 172772 95 chain 23746 chr20 63025520 + 17548244 17548522 AluSp 311 + 20 298 111797 278 chain 19243 chr20 63025520 + 17556924 17557154 7SK 245 - 14 244 129401 230 chain 5937 chr20 63025520 + 17566855 17566931 Tigger1 2417 + 2264 2356 185816 26 0 16 50 chain 33515 chr20 63025520 + 17718251 17718670 MLT2A1 477 + 0 477 78384 170 4 1 78 0 3 135 0 58 32 chain 12530 chr20 63025520 + 17757453 17757691 LTR29 598 - 420 598 150117 11 1 0 73 3 0 6 8 7 27 55 0 54 chain 117122 chr20 63025520 + 17759205 17760526 SVA_C 1631 + 16 1629 32083 4 0 1 492 0 1 69 0 76 80 0 40 71 0 179 378 1 0 207 4 0 15 chain 3129 chr20 63025520 + 17832356 17832389 Tigger2 2703 - 592 625 222389 33 chain 6734 chr20 63025520 + 17832436 17832515 HY4 93 - 3 83 179438 23 0 1 56 chain 5087 chr20 63025520 + 17862372 17862468 MER45A 178 - 0 98 194215 12 15 16 18 1 2 50 chain 136629 chr20 63025520 + 17872136 17874053 L1MA3 4352 + 2348 4244 26707 18 0 4 142 5 0 65 3 5 166 0 1 396 3 0 80 1 6 165 6 7 323 11 9 5 0 2 15 1 0 7 0 1 328 34 13 7 3 0 41 46 48 33 4 0 9 chain 4769 chr20 63025520 + 17878172 17878454 L1MA6 2487 + 2343 2478 197702 35 3 0 20 1 0 4 195 53 5 1 0 18 chain 3837 chr20 63025520 + 17884431 17884477 U6 107 + 31 79 209821 35 0 2 11 chain 33288 chr20 63025520 + 17958068 17958524 MER41C 542 - 81 542 78750 122 2 4 19 7 6 74 5 8 178 0 1 49 chain 34105 chr20 63025520 + 17965012 17966541 Tigger3b 1229 + 54 1196 77474 50 1009 598 7 1 0 61 3 0 221 9 19 74 7 21 36 0 1 11 4 7 36 chain 84319 chr20 63025520 + 17990238 17991213 SVA_D 2077 - 4 1028 41780 592 0 98 200 49 0 134 chain 3365 chr20 63025520 + 17991042 17991079 SVA_D 2077 - 730 767 91686 37 chain 31287 chr20 63025520 + 17991252 17991617 SVA_F 1814 - 638 1284 82011 75 0 281 290 chain 2846 chr20 63025520 + 17996141 17996177 MER2 342 + 33 69 227922 36 chain 3867 chr20 63025520 + 18023930 18024103 MLT1G 592 + 74 281 209345 24 1 0 11 104 43 10 0 96 23 chain 29849 chr20 63025520 + 18052374 18052688 AluYb9 318 - 4 318 85288 314 chain 4232 chr20 63025520 + 18076221 18076272 U7 62 - 7 58 204135 51 chain 43642 chr20 63025520 + 18077248 18077797 MER41A 554 + 0 551 64639 22 1 2 498 0 1 28 chain 11277 chr20 63025520 + 18087329 18087515 MER33 330 + 28 209 155139 28 4 0 59 13 17 20 1 0 51 4 0 6 chain 9617 chr20 63025520 + 18094112 18094223 HY1 111 - 0 111 162498 111 chain 56001 chr20 63025520 + 18105196 18105836 L1PA5 6144 - 2596 3236 54986 390 1 0 94 0 1 155 chain 225773 chr20 63025520 + 18105836 18108461 L1PA5 6144 + 3526 6144 17540 801 0 1 1191 1 0 141 8 0 151 1 0 99 3 5 34 4 6 177 3 1 11 chain 3195 chr20 63025520 + 18139463 18139522 MIRb 242 - 67 125 221015 32 4 0 6 4 7 13 chain 42047 chr20 63025520 + 18151482 18152173 Tigger1 2417 + 1294 2009 66562 70 18 21 83 3 6 4 0 1 51 0 1 21 9 8 42 1 2 62 1 0 34 5 8 50 9 15 19 7 8 84 3 1 41 14 23 60 chain 32927 chr20 63025520 + 18160814 18161210 THE1A-int 1579 - 1175 1578 79326 64 0 4 33 0 1 285 0 2 14 chain 130863 chr20 63025520 + 18174523 18176033 SVA_D 2077 + 2 2076 27896 26 1 7 404 0 116 210 3 0 151 2 1 12 0 38 35 0 52 38 7 363 621 chain 26713 chr20 63025520 + 18195477 18195865 LTR7B 505 - 10 505 97280 41 14 13 79 2 1 32 0 1 39 19 114 60 0 10 12 0 3 90 chain 115039 chr20 63025520 + 18207226 18208667 LTR12C 1709 + 0 1709 32777 463 4 5 182 0 278 184 9 6 106 11 4 397 1 0 84 chain 17858 chr20 63025520 + 18211468 18211833 L1PB1 5432 - 5 327 133217 9 6 0 14 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 28 10 0 3 4 0 8 8 7 45 1 0 15 2 1 12 1 0 41 16 10 10 1 0 9 1 0 24 3 0 9 chain 13054 chr20 63025520 + 18215806 18216161 Tigger1 2417 - 2008 2417 148020 36 63 118 10 1 0 39 1 0 92 95 96 18 chain 268549 chr20 63025520 + 18219792 18224080 L1PBa 3878 + 100 3714 15258 45 1 0 12 12 8 45 1 0 18 8 6 12 0 1 80 1 3 31 0 2 158 11 10 453 2 4 29 7 42 379 4 2 119 318 0 63 10 0 20 6 5 68 40 0 105 4 5 35 24 10 63 34 10 261 3 4 77 0 1 14 307 0 407 0 4 88 0 4 250 1 2 167 5 0 173 4 7 175 2 1 8 0 1 38 1 0 89 chain 209808 chr20 63025520 + 18227353 18229717 L1PA5 6144 + 3762 6132 18502 180 0 1 478 0 1 871 0 2 647 0 1 62 0 1 126 chain 12416 chr20 63025520 + 18237884 18238015 L1PA5 6144 - 15 146 150569 131 chain 25193 chr20 63025520 + 18241806 18242106 AluSp 311 - 15 311 103777 163 5 1 132 chain 11821 chr20 63025520 + 18246349 18246519 U2 167 - 3 167 152942 10 0 1 11 5 1 11 2 0 74 1 0 56 chain 4250 chr20 63025520 + 18246976 18247082 Tigger4 2445 - 103 202 203878 22 1 0 5 11 7 23 21 19 23 chain 19394 chr20 63025520 + 18255151 18255550 Tigger3a 397 - 0 397 128964 41 19 22 22 32 1 150 31 0 22 20 68 33 3 12 26 chain 55365 chr20 63025520 + 18303198 18303924 MER4E1 777 - 33 777 55481 22 0 6 164 20 14 78 1 0 5 0 1 106 0 19 22 7 5 91 0 1 210 chain 55196 chr20 63025520 + 18305331 18305985 PABL_A 660 + 0 660 55585 60 0 4 97 0 1 112 0 1 385 chain 6781 chr20 63025520 + 18309652 18309740 HY4 93 + 3 90 179094 60 4 3 24 chain 544433 chr20 63025520 + 18313556 18319722 L1PA4 6152 + 0 6144 2151 576 1 0 275 17 0 74 4 0 1140 1 0 3240 2 1 507 1 2 227 0 1 101 chain 14631 chr20 63025520 + 18324270 18324512 L1PB4 2604 - 145 404 142484 70 36 39 94 0 3 21 0 11 21 chain 6291 chr20 63025520 + 18350562 18350630 L1PA4 6152 - 370 438 182875 68 chain 31294 chr20 63025520 + 18350632 18350981 L1PA4 6152 + 5793 6143 81998 301 0 1 48 chain 107763 chr20 63025520 + 18355719 18356928 SVA_C 1631 - 0 1571 34788 17 4 0 207 1 0 389 1 0 46 0 367 447 0 1 97 chain 8116 chr20 63025520 + 18384734 18384878 MER30 238 + 66 238 170406 47 22 47 37 5 8 33 chain 36340 chr20 63025520 + 18388065 18388671 L1M1 2793 + 803 1390 74447 25 18 15 50 7 5 4 1 0 101 7 6 83 10 12 79 1 0 32 2 0 35 4 0 17 6 0 6 19 18 99 chain 20521 chr20 63025520 + 18406702 18407014 MER1B 344 + 0 344 125565 23 17 18 39 1 28 112 4 0 47 6 14 63 chain 36348 chr20 63025520 + 18415955 18416398 L1PA8 5853 + 5410 5847 74436 154 1 0 44 2 0 74 2 1 57 2 1 19 1 0 87 chain 13902 chr20 63025520 + 18416953 18417105 AluYc 301 + 137 289 144907 152 chain 13291 chr20 63025520 + 18458088 18458400 L1MC3 1789 + 60 380 147124 25 24 30 25 17 1 51 56 75 38 3 0 56 0 4 5 2 0 10 chain 22852 chr20 63025520 + 18459524 18459811 AluSq2 311 + 20 305 116331 108 1 0 111 3 1 20 0 1 44 chain 55316 chr20 63025520 + 18475637 18476225 SVA_D 2077 + 1468 2056 55514 588 chain 100002 chr20 63025520 + 18478298 18480131 MER57-int 2662 + 478 2494 36777 18 5 0 42 27 304 21 6 14 69 6 5 23 16 12 104 23 67 212 1 0 4 0 3 28 7 5 27 1 0 8 0 1 180 0 1 127 345 194 73 1 0 4 0 1 8 2 1 207 0 1 90 2 0 88 8 22 19 0 2 31 chain 28120 chr20 63025520 + 18480202 18480500 AluYf4 310 - 12 310 92574 298 chain 30643 chr20 63025520 + 18497775 18498195 LTR7B 505 - 10 505 83134 41 14 13 54 0 1 24 1 0 82 0 2 26 6 68 44 0 2 23 0 10 105 chain 259219 chr20 63025520 + 18499725 18503242 HERVH-int 3825 - 0 3780 15742 549 0 1 259 1 0 356 0 3 164 0 2 201 1 0 5 5 6 269 0 4 227 0 1 171 1 0 4 0 1 56 20 11 105 9 0 6 1 0 71 0 1 128 15 0 32 16 21 334 0 2 36 7 12 7 2 0 15 138 369 62 2 1 16 0 4 41 55 91 25 0 2 78 0 1 6 9 12 12 chain 2767 chr20 63025520 + 18509185 18509236 MER5A1 166 - 84 141 229224 27 9 15 15 chain 61121 chr20 63025520 + 18517712 18518390 L1PA3long 6157 + 5474 6157 52287 75 0 1 352 0 4 251 chain 28951 chr20 63025520 + 18536498 18536912 MER1A 529 - 111 529 89211 283 9 8 54 13 16 26 2 3 9 4 5 14 chain 9778 chr20 63025520 + 18578205 18578332 L1MB8 1703 - 117 246 161706 72 0 2 55 chain 40434 chr20 63025520 + 18578656 18579141 L1PA7 6471 - 14 519 68684 161 0 19 152 0 1 172 chain 504083 chr20 63025520 + 18582167 18587583 L1PA2 6032 + 613 6031 6594 1584 0 1 3675 0 1 157 chain 5010 chr20 63025520 + 18589036 18589093 U6 107 - 50 107 195015 57 chain 27926 chr20 63025520 + 18592669 18592977 AluYa5 310 - 5 310 93256 5 3 0 300 chain 17715 chr20 63025520 + 18602724 18602961 L1PA8 5853 - 0 234 133661 72 0 1 19 2 1 19 2 1 52 1 0 9 1 0 60 chain 21399 chr20 63025520 + 18609940 18610226 AluJb 308 - 4 288 122512 182 1 2 63 7 4 33 chain 25082 chr20 63025520 + 18610291 18610673 MSTA 426 - 0 426 104393 56 1 0 49 10 30 53 3 0 82 27 55 101 chain 22691 chr20 63025520 + 18629401 18629663 AluY 311 + 43 306 117119 89 0 1 173 chain 4053 chr20 63025520 + 18638561 18638684 MLT1F 544 - 419 544 206595 23 46 48 21 4 5 5 1 0 23 chain 23700 chr20 63025520 + 18640222 18640555 L1PA8 5853 + 5519 5844 112034 45 1 0 44 2 0 70 2 1 9 1 0 51 3 2 19 2 1 45 1 0 38 chain 7139 chr20 63025520 + 18644102 18644287 Tigger3a 397 + 0 226 176478 21 63 34 20 13 83 68 chain 52001 chr20 63025520 + 18670832 18671579 L1PA16 3655 - 745 1492 57627 13 1 0 11 15 14 171 35 37 17 9 8 34 0 1 441 chain 3910 chr20 63025520 + 18672424 18672469 MER3 215 + 165 210 208701 45 chain 18960 chr20 63025520 + 18678341 18678555 AluYk4 311 - 25 239 130205 214 chain 12796 chr20 63025520 + 18716506 18716691 MER30B 195 + 5 189 149069 74 1 0 9 7 10 58 3 0 33 chain 536671 chr20 63025520 + 18735914 18742014 L1PA4 6152 - 3 6151 3356 6 5 0 22 0 1 64 1 2 169 1 0 590 0 1 315 0 1 758 1 0 441 0 1 1008 0 2 247 0 35 178 2 1 297 1 2 62 1 2 1769 0 12 162 chain 11237 chr20 63025520 + 18757017 18757151 LTR10C 591 + 0 134 155273 134 chain 11329 chr20 63025520 + 18757243 18757377 LTR10C 591 + 0 134 154967 134 chain 49207 chr20 63025520 + 18757469 18758054 LTR10C 591 + 0 591 59587 187 1 5 318 0 2 79 chain 40889 chr20 63025520 + 18760546 18761122 MER61-int 3695 + 438 1160 68040 30 9 0 77 3 4 89 0 96 10 0 2 70 0 48 238 13 22 4 1 0 32 chain 12563 chr20 63025520 + 18761138 18761372 MER51B 395 + 124 386 149995 55 51 67 48 3 15 77 chain 115361 chr20 63025520 + 18767017 18768567 THE1B-int 1605 - 0 1605 32658 21 1 2 377 14 17 174 0 6 37 0 1 15 1 2 160 0 33 64 4 8 117 10 11 106 1 26 235 21 1 192 chain 10092 chr20 63025520 + 18781173 18781291 L1PA7 6471 + 6348 6465 160125 109 1 0 8 chain 30014 chr20 63025520 + 18801580 18802043 MLT2A1 477 + 0 477 84760 131 19 20 18 0 4 202 52 62 21 1 0 19 chain 17890 chr20 63025520 + 18804662 18804988 THE1C 375 + 0 325 133134 68 0 14 9 39 25 64 21 18 55 6 8 64 chain 27011 chr20 63025520 + 18810941 18811232 AluYk4 311 + 11 302 96253 291 chain 16195 chr20 63025520 + 18827056 18827244 L1PA5 6144 - 0 188 137769 188 chain 3442 chr20 63025520 + 18829978 18830077 LTR16A 446 + 280 373 216340 19 27 26 30 11 6 12 chain 6055 chr20 63025520 + 18841729 18841820 L1PB1 5432 - 2 88 184773 6 1 0 4 1 0 16 1 0 13 1 0 21 1 0 26 chain 531438 chr20 63025520 + 18841860 18847993 L1PA5 6144 - 6 6141 4025 38 2 0 910 7 4 703 0 9 590 5 0 605 1 0 251 0 1 400 11 12 1890 1 2 244 5 6 470 chain 525649 chr20 63025520 + 18848070 18854498 L1PA7 6471 - 3 6467 4614 9 2 0 838 2 0 9 0 2 11 0 2 81 3 0 218 1 0 14 0 1 256 0 1 927 0 1 4 1 0 98 0 2 251 0 12 18 0 3 98 0 1 306 0 1 204 0 4 368 0 1 117 13 12 196 1 5 350 0 1 11 1 0 6 0 1 31 0 2 363 2 1 26 0 1 348 0 3 438 0 1 116 0 1 165 28 29 83 0 1 103 0 1 311 chain 389111 chr20 63025520 + 18854513 18859714 L1PB1 5432 - 153 5402 10480 35 26 24 36 0 1 16 2 0 8 2 0 3 2 0 10 1 0 6 0 2 24 13 11 482 7 4 251 0 1 186 1 2 148 18 0 12 0 1 83 0 3 203 1 0 366 0 15 80 0 1 36 0 3 15 1 0 377 6 1 88 0 1 131 1 0 4 0 98 18 5 0 333 1 2 543 17 16 146 17 0 8 32 35 15 1 0 744 1 0 21 20 23 193 3 1 7 9 0 3 10 0 373 chain 21100 chr20 63025520 + 18872575 18872809 L1PA3long 6157 + 5912 6146 123555 234 chain 35492 chr20 63025520 + 18888335 18888861 MER41C 542 + 0 533 75565 49 0 1 43 4 5 133 0 3 74 0 1 5 1 2 17 7 9 69 14 15 23 12 9 75 chain 5762 chr20 63025520 + 18889097 18889279 MER53 195 + 21 181 187522 65 96 74 21 chain 14504 chr20 63025520 + 18901517 18901693 LTR39 781 - 551 736 142879 105 0 9 71 chain 45383 chr20 63025520 + 18909882 18910395 L1PA5 6144 - 3 517 62611 157 0 1 356 chain 307185 chr20 63025520 + 18911804 18916489 L1PB1 5432 - 10 4356 13112 16 4 3 11 1 0 22 1 0 24 2 0 14 53 39 12 1 0 44 1 0 16 2 1 53 1 0 6 10 6 9 1 0 31 21 0 12 16 9 11 1 4 6 0 1 52 4 6 17 3 4 183 1 0 6 1 0 50 0 1 85 11 4 38 2 0 5 1 0 468 0 7 164 318 0 108 1 0 52 11 10 306 4 19 71 2 1 71 0 1 5 2 1 130 0 1 372 16 14 273 5 4 51 2 0 64 0 6 206 16 17 321 1 7 182 10 6 22 0 4 254 21 32 295 chain 520427 chr20 63025520 + 18916489 18922956 L1PA7 6471 - 1 6468 5112 4 1 0 84 0 1 242 1 2 172 0 14 337 1 0 325 4 5 43 23 1 285 1 0 104 6 4 241 1 2 1967 1 2 204 0 3 65 12 14 171 1 0 326 8 10 330 4 6 15 0 1 245 6 10 515 24 22 185 2 0 37 2 0 262 0 1 210 chain 414227 chr20 63025520 + 18930611 18935035 L1HS 6032 - 2 4425 9692 3468 1 0 955 chain 9048 chr20 63025520 + 18946626 18946763 MLT1D-int 1367 + 24 158 165331 9 4 0 86 6 7 32 chain 234452 chr20 63025520 + 18947026 18950102 L1PA10 4194 + 380 3443 17065 12 4 1 10 1 0 79 10 8 396 1 2 116 0 2 115 0 2 33 0 1 129 1 23 75 3 4 4 1 0 317 2 0 53 47 6 367 0 3 343 22 23 124 0 2 46 0 4 322 19 26 129 9 0 286 chain 13977 chr20 63025520 + 18961371 18961569 L1PA8 5853 - 1 195 144663 91 2 1 19 2 1 52 1 0 9 1 0 21 chain 60461 chr20 63025520 + 19009498 19010254 L1PA8 5853 + 5108 5853 52603 456 1 0 44 2 0 52 8 4 11 5 4 9 2 1 51 2 1 19 1 0 93 chain 259709 chr20 63025520 + 19014675 19017564 L1PA4 6152 + 3261 6151 15717 2367 0 1 522 chain 81579 chr20 63025520 + 19018767 19019783 L1PA6 6164 + 5132 6161 42935 6 0 1 111 9 1 64 1 0 222 31 52 243 0 1 64 1 0 66 0 1 40 1 0 157 chain 20762 chr20 63025520 + 19026909 19027294 THE1D 372 - 0 372 124746 65 2 0 68 63 59 41 0 1 59 35 27 52 chain 21883 chr20 63025520 + 19034568 19034898 AluY 311 + 0 288 120698 64 1 6 57 47 0 161 chain 114020 chr20 63025520 + 19041509 19043242 L1PB1 5432 + 3732 5423 33091 69 7 5 156 6 5 12 34 7 127 1 0 74 2 0 85 0 1 104 1 0 6 0 2 66 2 0 177 3 0 164 3 11 300 1 2 9 3 0 24 1 0 4 27 39 39 2 1 10 7 6 38 7 6 13 52 38 14 2 0 24 1 0 22 2 1 11 1 0 8 1 0 11 chain 116159 chr20 63025520 + 19044991 19046542 THE1B-int 1605 + 22 1605 32393 222 0 3 54 0 1 130 7 32 224 74 67 547 0 9 129 0 1 164 chain 11529 chr20 63025520 + 19061244 19061388 MLT1A0 366 - 28 172 154185 144 chain 28525 chr20 63025520 + 19061426 19061730 AluYa5 310 - 9 310 91079 175 3 0 126 chain 197161 chr20 63025520 + 19062703 19065310 Charlie3 2679 + 18 2679 19412 15 8 7 51 5 6 179 10 11 315 12 13 133 0 2 35 0 1 128 0 9 250 0 9 849 0 1 79 0 1 236 40 78 10 0 1 166 22 12 64 chain 33941 chr20 63025520 + 19065806 19066202 L1PA7 6471 + 6071 6466 77706 242 1 0 153 chain 81551 chr20 63025520 + 19068512 19069397 L1PA2 6032 - 0 894 42955 591 0 9 294 chain 66780 chr20 63025520 + 19069397 19070111 L1PA2 6032 + 4405 5119 49697 714 chain 22106 chr20 63025520 + 19072349 19072701 THE1B 368 + 0 359 119753 77 26 18 18 0 1 55 1 0 29 28 43 118 chain 13601 chr20 63025520 + 19095713 19096115 THE1B 368 + 0 364 145974 13 2 0 34 80 70 29 1 0 23 109 73 5 0 3 56 2 0 8 0 10 40 chain 63493 chr20 63025520 + 19099091 19099780 L1PA2 6032 - 0 688 51248 14 1 0 674 chain 6630 chr20 63025520 + 19105533 19105614 MLT1A0 366 - 15 96 180241 81 chain 3935 chr20 63025520 + 19124264 19124307 MLT1C 463 + 57 100 208338 43 chain 511689 chr20 63025520 + 19142297 19148456 L1PA5 6144 - 9 6144 6009 174 1 0 5 2 3 317 0 2 152 1 4 701 1 2 655 6 4 441 1 0 266 0 2 86 6 7 68 1 3 46 0 1 38 14 1 1609 1 0 357 0 1 21 13 4 212 25 0 819 7 21 113 chain 47848 chr20 63025520 + 19165038 19165805 L1PB1 5432 + 4710 5423 60590 88 0 1 192 0 3 109 37 11 20 1 0 8 3 2 13 8 4 7 2 0 54 1 0 14 1 0 45 1 0 15 2 0 6 16 6 16 11 8 14 2 0 24 1 0 22 1 0 12 1 0 13 1 0 6 chain 149848 chr20 63025520 + 19167715 19169450 L1PA6 6164 - 2 1738 24637 142 18 18 1204 1 2 370 chain 29212 chr20 63025520 + 19181891 19182198 AluYb8 318 - 11 318 87995 307 chain 43771 chr20 63025520 + 19251879 19252593 L1PB1 5432 + 4712 5405 64487 4 0 1 80 20 19 22 0 1 259 21 19 29 1 0 10 19 13 51 2 1 15 1 0 41 0 8 10 5 2 11 9 0 18 10 7 13 2 0 24 1 0 22 1 0 13 chain 6147 chr20 63025520 + 19267367 19267443 MER33 330 - 50 126 184012 76 chain 18380 chr20 63025520 + 19274530 19274806 MER2B 336 - 6 268 131846 39 30 23 94 7 0 106 chain 105171 chr20 63025520 + 19275857 19277165 L1PA10 4194 - 449 1771 35459 149 0 7 328 0 2 129 5 0 419 0 8 26 11 14 13 4 2 18 0 1 206 chain 20796 chr20 63025520 + 19288129 19288412 L1PA8 5853 + 5576 5853 124616 32 2 0 74 1 0 5 2 1 52 2 1 19 1 0 93 chain 4803 chr20 63025520 + 19298696 19298753 LTR16C 481 + 176 233 197333 57 chain 54638 chr20 63025520 + 19326193 19327475 L1PB1 5432 + 4579 5423 55945 47 3 0 174 1 2 176 0 5 99 0 4 12 2 7 9 387 0 20 27 0 21 31 17 48 2 1 16 1 0 45 1 0 10 27 16 18 11 8 12 2 0 24 1 0 21 1 0 13 1 0 19 chain 67180 chr20 63025520 + 19400471 19401185 L1HS 6032 - 0 714 49577 714 chain 83357 chr20 63025520 + 19401190 19402118 L1HS 6032 + 4396 5298 42175 46 31 5 851 chain 9096 chr20 63025520 + 19413531 19413652 MER85 139 + 7 139 165087 24 1 2 57 0 10 39 chain 7824 chr20 63025520 + 19480235 19480345 MLT1A0 366 - 217 340 172171 71 6 19 33 chain 6621 chr20 63025520 + 19491148 19491246 MLT1A 405 + 8 104 180299 13 0 1 4 9 6 72 chain 145749 chr20 63025520 + 19517082 19518681 L1PA4 6152 + 4552 6151 25217 1266 1 0 190 0 1 142 chain 5774 chr20 63025520 + 19570756 19570829 MADE1 96 - 7 96 187393 30 1 17 42 chain 15585 chr20 63025520 + 19590058 19590275 L1PA8 5853 - 0 215 139625 41 2 0 40 0 3 8 2 1 19 2 1 58 1 0 44 chain 17116 chr20 63025520 + 19618620 19618858 L1PA8A 6298 - 11 249 135265 36 10 11 46 1 0 145 chain 3139 chr20 63025520 + 19619293 19619340 MIR 256 - 107 153 222193 19 3 2 25 chain 118002 chr20 63025520 + 19619378 19620842 LTR12C 1709 - 0 1709 31804 52 0 131 298 0 4 106 4 2 4 1 0 264 0 118 155 9 7 261 6 7 15 4 0 285 chain 155175 chr20 63025520 + 19658358 19660203 SVA_D 2077 - 7 2077 23960 309 1 0 323 1 98 126 0 1 2 49 0 104 4 187 15 1 0 77 40 0 194 0 40 569 5 0 25 chain 2110 chr20 63025520 + 19659120 19659169 SVA_D 2077 - 690 739 112153 49 chain 23067 chr20 63025520 + 19732692 19733120 LTR7B 505 - 2 505 115318 49 14 13 52 0 1 26 39 40 11 1 89 27 35 11 69 7 17 98 chain 284059 chr20 63025520 + 19733561 19736989 HERVH-int 3825 - 63 3825 14412 162 3 8 254 8 218 39 9 11 434 3 10 605 0 10 295 4 31 379 8 1 10 4 29 485 0 3 12 0 2 7 0 1 57 2 1 38 6 56 15 0 1 8 1 0 10 1 0 38 5 0 3 1 0 424 0 7 98 chain 26753 chr20 63025520 + 19736991 19737420 LTR7B 505 - 2 505 97152 49 14 13 52 0 1 26 1 0 43 0 1 7 1 89 27 35 11 69 7 17 98 chain 29372 chr20 63025520 + 19756713 19757093 MER4B 649 + 0 403 87195 34 6 7 150 2 0 122 0 24 66 chain 31270 chr20 63025520 + 19785167 19785666 L1P3 4156 - 17 472 82041 24 2 1 7 2 0 245 70 31 20 14 12 115 chain 58286 chr20 63025520 + 19786362 19787074 L1PA7 6471 - 1 709 53817 9 2 0 145 8 9 27 2 1 181 2 0 336 chain 181858 chr20 63025520 + 19825391 19827505 L1PA7 6471 - 12 2143 20800 133 5 6 617 1 0 72 0 7 815 2 1 33 0 3 98 0 8 338 chain 3663 chr20 63025520 + 19828624 19828668 MER58A 224 - 124 168 212528 44 chain 239186 chr20 63025520 + 19833527 19836174 L1PA5 6144 - 0 2650 16819 9 2 0 133 0 1 700 0 4 1803 chain 5825 chr20 63025520 + 19843274 19843378 MER31A 484 + 350 482 186901 24 21 49 59 chain 36118 chr20 63025520 + 19846527 19846988 MER1A 529 - 1 466 74742 67 8 6 178 0 6 208 chain 23120 chr20 63025520 + 19872876 19873156 AluSg7 307 - 25 307 115038 150 0 1 87 0 1 43 chain 3052 chr20 63025520 + 19940482 19940515 MER91C 135 + 74 107 223976 33 chain 12741 chr20 63025520 + 19964540 19964697 L1PA5 6144 - 9 172 149283 9 0 6 148 chain 11066 chr20 63025520 + 19964698 19964829 L1PA5 6144 + 5842 5972 155939 43 1 0 87 chain 4922 chr20 63025520 + 19979821 19979883 MIR 256 + 59 121 196014 62 chain 18013 chr20 63025520 + 20008928 20009143 L1PA7 6471 + 6256 6468 132819 57 0 1 147 4 0 7 chain 75027 chr20 63025520 + 20046609 20047474 L1PA7 6471 + 5587 6470 46005 35 0 2 24 0 9 655 1 4 86 0 4 64 chain 24713 chr20 63025520 + 20063395 20063772 L1PB2 3958 + 3468 3838 106371 27 0 1 14 4 1 34 1 0 38 1 2 32 1 0 62 4 3 61 9 7 24 2 1 63 chain 9628 chr20 63025520 + 20073351 20073695 L1MB7 1623 + 1096 1423 162452 89 208 191 47 chain 405058 chr20 63025520 + 20102625 20108319 L1PB1 5432 - 19 5412 9944 9 1 0 13 1 0 21 1 0 24 24 19 19 19 8 4 1 0 16 324 3 40 27 26 44 2 0 8 17 12 10 1 0 23 1 0 8 0 3 118 1 2 177 7 1 100 0 2 73 4 0 298 13 31 107 0 4 22 0 4 84 18 32 177 1 0 88 0 1 46 5 0 18 1 0 77 0 1 652 4 24 122 1 0 514 0 1 270 0 2 239 2 6 233 0 5 31 0 4 88 61 55 10 0 3 763 1 0 5 0 1 552 29 9 18 0 7 6 chain 31141 chr20 63025520 + 20120839 20121184 L1PA3long 6157 - 0 344 82270 259 1 0 85 chain 32117 chr20 63025520 + 20121184 20121537 L1PA3long 6157 + 5473 5827 80657 195 0 1 158 chain 125832 chr20 63025520 + 20127813 20129566 L1PB2 3958 - 167 1855 29148 18 1 0 20 2 0 72 1 0 17 3 4 43 1 0 166 2 0 13 2 0 7 0 3 54 5 0 12 1 0 55 2 0 96 12 4 74 3 2 206 2 0 395 0 2 34 51 21 144 23 10 216 chain 26772 chr20 63025520 + 20138605 20138893 L1PA2 6032 + 5739 6027 97075 288 chain 14734 chr20 63025520 + 20144261 20144482 L1PA8 5853 - 0 216 142158 93 1 0 19 2 1 36 0 1 9 4 1 14 2 1 41 chain 19301 chr20 63025520 + 20145384 20145746 THE1B 368 - 0 368 129238 49 14 13 54 20 28 6 0 4 19 25 18 39 28 30 108 chain 45436 chr20 63025520 + 20159688 20160383 L1PA13 3608 + 2887 3548 62559 245 4 1 27 10 7 66 0 1 39 2 0 62 1 0 48 6 5 8 2 0 48 2 0 4 2 0 19 1 0 20 0 3 3 6 0 11 5 0 14 1 0 6 7 1 12 3 0 11 chain 4923 chr20 63025520 + 20171407 20171467 Charlie1a 1436 + 250 310 196012 60 chain 24791 chr20 63025520 + 20198772 20199135 THE1A 353 + 0 353 105939 107 4 3 123 9 9 16 1 0 41 13 5 49 chain 28977 chr20 63025520 + 20223634 20224000 THE1B 368 - 0 368 89099 190 7 6 130 0 5 22 2 0 15 chain 122519 chr20 63025520 + 20224380 20225884 THE1B-int 1605 - 69 1605 30214 490 1 2 408 0 6 174 1 26 430 chain 27560 chr20 63025520 + 20225884 20226254 THE1B 368 - 0 368 94468 33 4 0 161 3 2 129 1 6 24 2 0 13 chain 201115 chr20 63025520 + 20295197 20297398 L1PA3long 6157 - 15 2215 19132 1477 1 0 723 chain 30114 chr20 63025520 + 20326528 20326844 AluYb8 318 - 2 318 84443 316 chain 22204 chr20 63025520 + 20332665 20333107 THE1D 372 - 0 372 119334 35 2 1 90 2 8 39 13 14 24 0 2 47 93 9 23 12 18 62 chain 5365 chr20 63025520 + 20397918 20397995 MLT1C 463 - 33 108 191367 45 1 0 6 1 0 24 chain 9809 chr20 63025520 + 20405334 20405451 L1PA4 6152 + 6030 6152 161548 111 0 5 6 chain 3469 chr20 63025520 + 20427065 20427115 MADE1 96 + 30 96 215829 15 1 17 34 chain 3894 chr20 63025520 + 20458600 20458645 MER58B 340 + 288 333 208962 45 chain 12529 chr20 63025520 + 20459152 20459297 L1PA16 3655 + 3421 3569 150121 140 0 3 5 chain 6704 chr20 63025520 + 20520753 20520864 L1MA9 1812 - 166 272 179655 30 3 1 35 1 0 13 3 1 26 chain 165171 chr20 63025520 + 20522536 20525671 L1PA7 6471 + 4432 6466 22634 71 0 8 7 1 3 1040 0 4 40 905 16 58 0 2 102 0 6 4 229 0 158 4 0 500 0 1 7 2 0 7 chain 45937 chr20 63025520 + 20524018 20524534 L1PA5 6144 + 5628 6144 62095 516 chain 6838 chr20 63025520 + 20528411 20528576 Tigger3a 397 - 24 215 178670 19 29 27 15 0 1 24 1 0 12 22 50 43 chain 13856 chr20 63025520 + 20530648 20530921 L1PB1 5432 - 5 254 145047 5 2 0 14 5 4 13 1 0 21 1 0 24 2 0 6 9 8 5 2 0 31 11 0 15 1 0 45 1 0 15 2 1 42 chain 15274 chr20 63025520 + 20644035 20644236 Tigger7 736 - 219 423 140560 22 2 0 8 0 4 53 1 0 5 0 1 70 0 1 40 chain 22254 chr20 63025520 + 20670016 20670305 AluSc 308 + 11 297 119106 56 8 0 7 1 9 201 3 0 13 chain 45022 chr20 63025520 + 20680261 20680898 L1PA16 3655 + 2903 3537 63031 14 2 0 13 0 1 142 5 0 7 5 11 94 0 1 18 1 0 55 1 0 19 2 1 11 2 0 26 7 8 213 chain 3600 chr20 63025520 + 20718849 20718896 L1MC4 1079 - 670 717 213641 47 chain 80426 chr20 63025520 + 20719779 20720924 L1PB1 5432 + 4285 5424 43417 343 3 0 54 0 2 188 3 0 211 14 35 18 5 0 5 0 3 7 2 8 9 2 0 41 1 0 11 2 1 15 1 0 44 1 0 11 32 20 15 3 1 5 1 0 14 2 0 24 1 0 21 1 0 13 1 0 15 1 0 5 chain 25442 chr20 63025520 + 20747770 20748150 MER4B 649 - 77 479 102489 119 20 11 21 7 0 56 6 21 122 1 24 28 chain 8923 chr20 63025520 + 20749556 20749876 LTR12C 1709 + 928 1172 152354 137 170 94 13 chain 15911 chr20 63025520 + 20749880 20750104 LTR12C 1709 + 654 1037 138626 183 9 169 4 1 0 27 chain 33244 chr20 63025520 + 20790677 20791109 MER57A1 433 + 0 433 78813 288 1 2 143 chain 24135 chr20 63025520 + 20793959 20794250 AluYc3 301 - 7 301 109556 45 0 1 51 1 2 80 1 2 113 chain 9067 chr20 63025520 + 20800598 20800802 LTR24 460 + 240 455 165228 54 75 86 75 chain 3230 chr20 63025520 + 20848891 20848929 MIR 256 + 116 154 220413 38 chain 22550 chr20 63025520 + 20880872 20881232 MER61C 433 - 10 367 117805 24 13 12 73 0 1 103 1 0 35 45 43 66 chain 2967 chr20 63025520 + 20885947 20885981 MLT2B2 565 - 1 35 225740 34 chain 12936 chr20 63025520 + 20889505 20889662 MER83B 357 - 32 189 148480 157 chain 3406 chr20 63025520 + 20965315 20965356 MLT1K 546 - 16 57 216982 41 chain 32511 chr20 63025520 + 20981383 20981822 MLT2A1 477 - 0 477 80006 43 15 49 62 1 0 149 1 5 28 0 1 140 chain 17448 chr20 63025520 + 20988422 20988643 MER47A 366 + 30 250 134384 4 1 0 216 chain 45222 chr20 63025520 + 21012556 21013208 L1PB2 3958 + 3136 3772 62803 171 2 0 56 1 0 12 5 0 57 8 6 13 4 0 102 2 1 64 2 1 61 1 0 48 0 3 22 2 0 19 chain 4695 chr20 63025520 + 21018167 21018262 MER5B 177 - 81 177 198577 20 24 25 5 1 0 34 0 1 11 chain 36314 chr20 63025520 + 21018802 21019227 L1PA6 6164 + 5736 6161 74487 425 chain 20308 chr20 63025520 + 21019307 21019582 Tigger3c 601 - 62 545 126213 172 1 0 33 3 0 15 1 0 26 0 213 24 chain 8920 chr20 63025520 + 21040882 21040994 MER66B 489 - 0 111 166037 4 1 0 107 chain 26844 chr20 63025520 + 21041013 21041434 LTR7B 505 - 10 505 96827 41 14 13 48 4 5 26 15 14 29 0 1 38 8 10 18 6 68 69 0 10 105 chain 2492 chr20 63025520 + 21077107 21077133 MLT1J1 437 - 350 376 233211 26 chain 5688 chr20 63025520 + 21101195 21101382 MLT2D 439 - 243 428 188213 52 104 102 31 chain 10482 chr20 63025520 + 21134231 21134599 MLT1B 390 - 0 381 158323 65 11 12 33 120 113 30 1 0 9 67 81 19 0 6 13 chain 36091 chr20 63025520 + 21148562 21148987 L1PA4 6152 - 0 426 74773 139 0 7 10 6 0 270 chain 119580 chr20 63025520 + 21149002 21150322 L1PA4 6152 + 4419 5744 31187 882 0 5 438 chain 49466 chr20 63025520 + 21174104 21174655 L1PA4 6152 + 5600 6151 59412 551 chain 29342 chr20 63025520 + 21180906 21181362 MER1A 529 - 0 479 87333 32 53 40 317 3 0 5 12 51 34 chain 26139 chr20 63025520 + 21184744 21185020 AluYa5 310 - 1 277 99444 276 chain 11430 chr20 63025520 + 21204641 21204915 AluSp 311 - 22 176 154562 104 120 0 50 chain 150800 chr20 63025520 + 21233869 21235650 L1PA7 6471 - 12 1795 24501 314 0 1 5 0 2 516 1 0 945 chain 38666 chr20 63025520 + 21235656 21236112 L1PA7 6471 + 4211 4668 71200 46 1 2 409 chain 4856 chr20 63025520 + 21257404 21257462 L1MC4 1079 + 76 134 196712 58 chain 181710 chr20 63025520 + 21262567 21264623 L1PA5 6144 - 12 2076 20818 1228 0 4 499 0 4 329 chain 110807 chr20 63025520 + 21272329 21273658 LTR12C 1709 + 0 1707 34000 212 1 4 362 9 1 76 7 286 171 1 0 5 3 1 106 0 4 52 0 2 158 0 101 166 chain 9294 chr20 63025520 + 21318281 21318402 MER85 139 + 7 139 164086 92 0 11 29 chain 25040 chr20 63025520 + 21385557 21385851 AluY 311 + 16 311 104593 116 0 1 178 chain 451325 chr20 63025520 + 21394168 21400278 L1PA7 6471 + 0 6466 8726 95 3 4 189 2 0 80 1 2 31 8 2 12 3 4 1076 0 3 597 0 15 410 0 2 119 18 4 85 14 5 132 0 1 628 2 1 5 0 5 42 0 4 66 0 1 94 0 4 213 5 3 97 1 0 543 1 0 4 0 1 79 8 20 484 584 924 212 29 30 138 chain 36452 chr20 63025520 + 21399315 21399731 L1PA6 6164 + 5747 6162 74292 285 1 0 130 chain 5762 chr20 63025520 + 21399746 21399833 L1MB3 1562 + 1458 1544 187518 66 4 3 17 chain 29907 chr20 63025520 + 21424789 21425145 L1PA7 6471 + 6105 6457 85074 206 4 0 146 chain 10896 chr20 63025520 + 21432181 21432342 MER30 238 + 61 235 156606 44 12 28 66 3 0 36 chain 68008 chr20 63025520 + 21436597 21437673 L1PA11 4918 - 289 1397 49245 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 1 0 15 52 39 11 1 0 15 2 0 51 16 35 25 0 26 32 9 11 59 0 1 22 1 0 160 1 0 8 0 1 209 0 1 184 0 1 52 6 22 53 chain 9825 chr20 63025520 + 21452629 21452754 MER85 139 + 4 139 161472 91 0 10 34 chain 8438 chr20 63025520 + 21455751 21455875 MER2 342 - 127 251 168635 63 7 8 27 1 0 26 chain 318439 chr20 63025520 + 21460630 21464231 L1PA5 6144 - 1 3607 12651 819 0 1 29 1 0 35 5 1 913 0 4 432 0 1 921 0 1 416 0 3 30 chain 4445 chr20 63025520 + 21467500 21467572 Charlie18a 321 + 85 158 201405 33 6 7 33 chain 12911 chr20 63025520 + 21471034 21471264 MLT1A1 405 - 28 270 148589 5 0 2 101 7 8 60 39 48 18 chain 7326 chr20 63025520 + 21514879 21514974 MSTD 398 + 303 398 175253 95 chain 28333 chr20 63025520 + 21532234 21532597 L1PA8 5853 + 5494 5853 91823 27 0 2 41 1 0 46 2 0 72 1 0 6 1 0 7 1 2 43 2 1 19 1 0 93 chain 2997 chr20 63025520 + 21574410 21574447 MIRb 242 - 98 135 225084 37 chain 46877 chr20 63025520 + 21584702 21585302 L1PA8 5853 - 0 597 61329 93 1 0 19 2 1 48 1 0 13 2 1 70 2 0 44 1 0 43 0 1 82 0 1 60 0 2 119 chain 13752 chr20 63025520 + 21585302 21585460 L1P3 4156 - 360 518 145428 158 chain 34163 chr20 63025520 + 21592372 21592751 L1PA4 6152 + 5764 6143 77397 379 chain 77412 chr20 63025520 + 21601413 21602599 L1MA3 4352 + 3247 4349 44771 141 7 6 8 0 1 497 5 7 189 93 23 44 0 2 14 1 0 50 6 1 4 0 1 25 2 0 22 1 0 6 12 11 18 1 0 7 15 7 18 chain 164327 chr20 63025520 + 21615671 21617713 L1PA6 6164 + 4141 6156 22766 20 0 1 546 6 4 55 47 2 517 0 1 24 1 5 280 0 2 394 4 16 148 chain 40129 chr20 63025520 + 21637525 21638038 MER41C 542 + 0 535 69141 49 0 1 261 0 21 203 chain 382805 chr20 63025520 + 21714614 21720012 L1PB1 5432 - 10 5402 10670 18 1 0 12 1 0 22 1 0 22 29 24 16 24 12 16 2 1 19 26 25 14 2 1 52 2 0 9 2 0 3 2 0 12 1 0 10 1 0 20 3 0 9 0 3 299 0 19 156 3 0 22 0 5 151 1 5 92 2 0 16 6 8 375 3 2 22 5 0 203 1 3 358 4 5 150 1 0 72 1 0 82 0 1 49 0 1 104 8 11 438 0 1 5 1 0 131 2 3 184 1 5 705 110 91 161 0 4 61 1 0 64 4 6 53 4 1 103 0 1 25 9 10 43 1 2 24 0 2 19 4 9 150 0 6 11 0 1 4 1 0 23 3 0 144 1 0 86 22 21 232 4 5 27 chain 460655 chr20 63025520 + 21726329 21731729 L1PA6 6164 - 11 5435 8374 177 7 6 143 0 13 496 1 5 38 1 0 302 7 3 986 0 1 405 0 1 345 4 1 906 0 2 130 0 2 18 1 0 703 0 1 687 0 10 43 chain 15158 chr20 63025520 + 21745661 21745976 L1PB1 5432 - 8 291 140885 4 1 0 16 1 0 13 2 1 20 1 0 24 2 0 14 1 0 5 2 0 18 17 7 6 3 0 16 6 5 38 1 0 16 2 1 53 2 0 6 9 5 10 1 0 5 chain 27380 chr20 63025520 + 21750850 21751373 L1PA11 4918 - 289 774 95025 18 47 33 11 2 0 13 1 0 15 43 31 20 1 0 14 2 0 64 9 7 9 2 1 65 5 0 140 0 3 23 0 1 4 2 0 13 chain 33939 chr20 63025520 + 21782783 21783211 L1PA8 5853 + 5428 5849 77715 136 1 0 44 2 0 74 8 6 52 2 1 19 1 0 89 chain 510186 chr20 63025520 + 21834083 21840550 L1PA6 6164 + 3 6161 6147 415 1 0 89 18 17 215 0 1 4 1 0 10 0 30 11 0 1 169 2 0 89 1 2 396 1 0 8 0 1 245 0 1 114 0 1 99 8 7 245 1 0 157 13 0 67 0 4 695 315 0 42 6 0 60 0 1 32 4 1 412 0 1 195 15 6 899 0 1 301 0 1 783 0 1 329 chain 71254 chr20 63025520 + 21841594 21842662 L1PB1 5432 + 4378 5420 47828 127 1 2 119 3 0 33 0 4 42 1 3 248 0 1 57 0 2 87 1 2 12 3 0 17 1 0 13 1 0 9 2 0 3 2 0 10 2 0 51 2 1 15 1 0 44 1 0 16 1 0 4 66 50 19 2 1 21 1 0 13 1 0 16 chain 552742 chr20 63025520 + 21868293 21874323 L1PA2 6032 + 0 6032 1103 1309 0 1 583 0 1 4138 chain 550440 chr20 63025520 + 21891491 21897519 L1PA2 6032 - 4 6031 1386 2842 1 0 131 1 0 835 0 2 1961 1 0 256 chain 24829 chr20 63025520 + 21905162 21905459 AluSc5 308 + 11 308 105732 297 chain 368267 chr20 63025520 + 21909626 21913743 L1PA3long 6157 + 2039 6157 11148 1044 0 1 93 1 0 1426 8 0 235 0 1 28 2 1 549 0 8 585 1 2 145 chain 28391 chr20 63025520 + 21942729 21943036 AluYf4 310 + 0 307 91614 307 chain 3133 chr20 63025520 + 21944578 21944633 L1MA5A 2387 - 12 63 222319 16 2 0 19 1 0 8 1 0 8 chain 188426 chr20 63025520 + 21955257 21957932 L1PB2 3958 - 144 2801 20199 23 12 4 12 1 0 16 11 10 70 1 0 61 2 1 76 2 1 89 19 13 56 9 5 16 1 0 44 19 17 228 5 0 144 11 3 4 0 1 140 1 2 39 0 1 55 0 4 192 4 5 278 14 21 105 0 8 337 9 10 133 0 1 3 4 0 8 4 1 6 0 3 302 0 1 10 1 0 98 chain 5615 chr20 63025520 + 21988013 21988082 LTR16C 481 - 0 69 188928 69 chain 548105 chr20 63025520 + 21990070 21996231 L1PA3long 6157 + 4 6157 1695 2576 9 0 2672 3 4 901 chain 33258 chr20 63025520 + 21996250 21996624 L1PA3long 6157 + 5774 6148 78789 374 chain 81618 chr20 63025520 + 22001339 22002256 L1PA4 6152 - 3 920 42919 917 chain 12989 chr20 63025520 + 22003696 22003946 L1PB1 5432 - 10 247 148290 17 2 1 13 1 0 21 1 0 24 2 0 15 7 4 15 20 18 14 1 0 44 1 0 15 2 1 35 chain 3699 chr20 63025520 + 22011769 22011839 L1MC1 2226 - 45 105 211942 29 1 0 14 1 0 9 8 0 8 chain 7317 chr20 63025520 + 22014922 22015013 MER121 330 + 88 179 175318 91 chain 549064 chr20 63025520 + 22021102 22027248 L1PA3long 6157 - 0 6155 1569 915 0 1 883 0 4 408 0 4 2118 1 0 1595 0 1 226 chain 5407 chr20 63025520 + 22041730 22041806 MIR 256 - 113 195 190913 35 5 11 36 chain 73591 chr20 63025520 + 22058873 22059758 L1PA6 6164 - 9 894 46736 138 3 2 460 0 1 284 chain 26580 chr20 63025520 + 22059758 22060048 L1PA6 6164 + 4958 5248 97418 290 chain 30282 chr20 63025520 + 22074527 22074911 L1PA5 6144 - 0 383 83986 144 0 5 11 14 8 215 chain 109795 chr20 63025520 + 22093246 22094817 L1PA11 4918 + 3040 4578 34259 40 0 1 237 0 2 208 0 6 6 6 0 126 1 0 22 11 2 163 1 0 197 20 10 193 6 7 71 2 1 61 2 1 20 1 0 61 2 0 14 1 0 19 4 0 8 30 27 11 1 0 13 2 0 11 chain 531245 chr20 63025520 + 22095274 22101710 L1PA4 6152 + 6 6139 4051 923 0 1 16 0 4 102 8 9 139 0 1 293 0 1 688 0 1 1332 1 0 1129 316 0 660 0 4 165 0 1 423 2 1 66 0 1 173 chain 84750 chr20 63025520 + 22112393 22113340 L1PA4 6152 + 2569 3515 41615 602 1 0 344 chain 234755 chr20 63025520 + 22113340 22115971 L1PA4 6152 + 3516 6148 17042 2528 0 1 103 chain 10099 chr20 63025520 + 22153162 22153375 L1PB1 5432 - 42 234 160096 20 1 0 24 47 33 17 3 0 16 2 1 42 1 0 16 2 1 22 chain 317674 chr20 63025520 + 22166729 22170979 L1PB1 5432 - 804 5037 12689 58 0 1 769 0 1 62 35 1 53 0 4 735 10 14 36 0 3 49 2 0 260 0 5 85 2 0 146 13 12 261 3 2 390 1 0 4 0 1 50 15 13 5 0 2 188 7 8 8 8 0 7 1 0 74 4 1 76 12 13 77 0 1 167 31 40 105 0 1 77 0 1 151 1 0 8 5 6 24 0 1 4 1 0 4 0 3 166 chain 121524 chr20 63025520 + 22172956 22174744 L1PA13 3608 + 169 1988 30529 8 3 0 24 31 20 10 0 1 54 8 6 124 1 0 12 2 1 16 2 0 9 14 9 18 1 0 17 22 18 8 0 14 83 11 9 65 1 11 27 9 38 434 1 15 181 3 4 220 7 0 331 0 4 22 3 0 6 chain 511133 chr20 63025520 + 22174773 22180906 L1PA6 6164 + 0 6162 6056 343 1 0 28 25 32 97 11 10 293 0 17 632 1 0 1744 7 8 318 0 1 340 1 2 647 1 0 137 3 0 901 0 2 450 6 6 83 0 10 54 3 0 7 chain 77493 chr20 63025520 + 22189072 22190045 L1PA7 6471 - 1 968 44737 169 5 4 10 12 9 146 0 1 359 9 7 144 1 0 118 chain 57045 chr20 63025520 + 22190493 22191119 L1PA3long 6157 + 5530 6156 54504 626 chain 27402 chr20 63025520 + 22236239 22236552 L1PA5 6144 - 370 683 94958 313 chain 33165 chr20 63025520 + 22236552 22236926 L1PA5 6144 + 5770 6144 78961 374 chain 6892 chr20 63025520 + 22255663 22255760 L1PA7 6471 - 4 100 178244 24 5 4 68 chain 137757 chr20 63025520 + 22257523 22259109 L1PA5 6144 + 4540 6144 26522 557 0 1 72 0 1 54 0 16 227 1 0 4 0 1 515 1 0 6 0 1 149 chain 16265 chr20 63025520 + 22271773 22271952 L1PA8 5853 - 291 470 137562 179 chain 20744 chr20 63025520 + 22271952 22272241 L1PA8 5853 + 5570 5853 124807 38 2 0 70 17 15 49 2 1 17 1 0 93 chain 76644 chr20 63025520 + 22278757 22279608 L1PA3long 6157 - 0 867 45145 142 0 14 15 0 2 694 chain 47666 chr20 63025520 + 22279608 22280129 L1PA3long 6157 + 4751 5272 60721 521 chain 15685 chr20 63025520 + 22398046 22398283 MSTA 426 - 7 255 139311 112 1 12 38 0 1 7 23 22 56 chain 186777 chr20 63025520 + 22457400 22459886 L1PA11 4918 + 1735 4504 20352 78 4 1 163 0 5 38 14 14 13 1 0 58 0 1 89 14 13 83 0 2 100 1 0 428 0 1 58 0 1 104 5 0 264 7 23 253 0 2 161 11 11 260 10 287 82 6 0 65 2 1 80 2 0 13 5 3 14 chain 2385 chr20 63025520 + 22489575 22489639 MER5B 177 - 6 72 234344 15 27 29 22 chain 121034 chr20 63025520 + 22529435 22531076 THE1B-int 1605 - 6 1605 30683 222 90 16 56 0 1 311 0 5 528 3 28 74 19 20 155 8 7 4 0 1 171 chain 3720 chr20 63025520 + 22535133 22535179 L1MC5 759 - 60 106 211640 46 chain 5453 chr20 63025520 + 22598779 22598875 MER97c 529 - 302 390 190500 38 13 7 5 2 0 38 chain 112545 chr20 63025520 + 22624493 22626063 THE1B-int 1605 - 0 1592 33519 401 71 69 449 0 1 7 0 3 73 7 0 121 24 49 28 1 3 364 4 7 5 3 0 12 chain 16063 chr20 63025520 + 22628757 22629091 L1PB1 5432 - 8 310 138170 4 1 0 16 1 0 15 1 0 19 1 0 22 7 5 11 1 0 4 3 1 18 18 7 6 1 0 15 1 0 44 1 0 16 2 1 53 27 20 13 1 0 12 chain 9458 chr20 63025520 + 22637657 22637806 L1MA5 2750 - 110 251 163284 8 2 0 4 0 1 15 0 1 49 1 0 21 10 3 39 chain 29649 chr20 63025520 + 22655337 22655646 AluYk12 309 + 0 309 86069 309 chain 32798 chr20 63025520 + 22673831 22674283 MER41A 554 - 113 554 79532 252 42 31 158 chain 11202 chr20 63025520 + 22674284 22674418 MER41-int 2638 - 2 139 155415 95 0 3 39 chain 49821 chr20 63025520 + 22694939 22695579 L1PA10 4194 - 33 671 59142 11 1 0 34 3 0 207 0 2 384 chain 11732 chr20 63025520 + 22701858 22701992 L1PA5 6144 - 4 138 153332 134 chain 527360 chr20 63025520 + 22715315 22721421 L1PA5 6144 + 0 6144 4461 474 0 11 56 7 8 129 1 4 635 0 1 116 0 1 864 1 7 1311 0 1 458 0 14 1377 0 1 339 1 0 337 chain 5374 chr20 63025520 + 22730282 22730348 MER53 195 - 123 189 191256 66 chain 23992 chr20 63025520 + 22739952 22740297 L1PA8 5853 - 0 338 110373 92 5 4 16 2 1 52 2 1 8 2 1 68 2 0 46 1 0 49 chain 6678 chr20 63025520 + 22769556 22769842 Tigger3a 397 + 0 371 179845 26 11 15 11 53 133 66 102 103 17 chain 38609 chr20 63025520 + 22797596 22798141 L1PA8 5853 - 0 524 71280 12 1 6 75 1 0 19 2 1 36 30 26 29 21 4 37 2 0 46 1 0 233 chain 137103 chr20 63025520 + 22811224 22812920 L1PA7 6471 - 5 1666 26618 19 17 3 813 0 1 8 2 0 32 24 0 453 1 6 182 1 0 144 chain 366414 chr20 63025520 + 22850239 22854426 L1PA4 6152 - 9 4210 11199 20 0 1 317 5 6 75 0 2 468 1 0 1678 0 1 121 0 2 275 1 0 6 1 0 549 0 12 161 2 0 507 chain 73771 chr20 63025520 + 22854803 22855792 L1PA8 5853 - 0 978 46636 92 2 1 16 9 8 41 0 1 5 1 0 11 1 0 70 2 0 44 1 0 240 26 18 227 0 1 69 0 2 132 chain 59770 chr20 63025520 + 22867031 22867849 L1PA11 4918 - 2735 3556 52951 194 12 14 162 4 1 99 0 1 8 1 2 5 1 0 236 6 9 39 1 0 4 0 1 46 chain 253606 chr20 63025520 + 22892889 22896797 L1PB1 5432 - 19 3526 16051 14 1 0 8 1 0 21 1 0 23 25 20 19 9 0 12 2 0 16 1 0 42 2 1 16 2 1 53 2 0 9 9 6 5 1 0 9 1 0 24 3 0 9 1 2 299 0 1 163 0 1 12 3 0 49 0 4 256 324 0 351 4 5 50 28 27 153 2 4 513 5 6 180 15 9 48 38 32 98 3 0 8 0 1 45 0 5 51 8 0 136 1 0 4 0 1 96 7 0 73 8 18 313 0 1 5 1 0 7 45 7 165 chain 3515 chr20 63025520 + 22896797 22896837 L1PB 1623 - 645 685 205491 40 chain 26823 chr20 63025520 + 22940237 22940593 THE1A 353 + 0 353 96902 46 2 1 62 2 1 92 1 0 151 chain 13123 chr20 63025520 + 22940593 22940748 THE1A-int 1579 + 0 155 147755 155 chain 391039 chr20 63025520 + 22948401 22953819 L1PB1 5432 + 19 5413 10422 27 12 13 215 3 4 128 1 0 137 0 2 7 19 4 94 1 8 737 1 0 7 8 0 156 0 1 139 5 7 7 2 0 292 23 32 75 5 6 96 11 10 6 0 1 147 0 4 119 5 0 237 2 1 104 1 0 9 0 5 62 0 3 224 0 1 132 0 1 172 8 9 270 2 0 150 0 2 80 2 1 100 1 0 558 3 0 40 0 1 7 0 1 33 0 2 29 1 2 25 0 4 337 2 3 10 3 0 25 24 18 9 2 0 53 2 1 16 1 0 12 72 59 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 545494 chr20 63025520 + 22968229 22974357 L1PA4 6152 - 0 6151 2014 767 0 2 82 0 1 2461 0 1 965 0 18 662 0 1 1191 chain 6171 chr20 63025520 + 22980804 22980882 MLT1A0 366 - 48 126 183799 78 chain 32374 chr20 63025520 + 23004562 23004963 MER48 407 - 0 401 80232 372 1 0 4 0 1 24 chain 32418 chr20 63025520 + 23006136 23006523 MER48 407 - 0 407 80170 249 1 21 137 chain 3275 chr20 63025520 + 23009855 23009906 LTR40a 516 + 0 53 219459 23 6 8 22 chain 4850 chr20 63025520 + 23011846 23011910 MER33 330 - 137 201 196782 64 chain 8024 chr20 63025520 + 23049067 23049205 MER76 683 + 566 683 170911 7 12 0 42 3 0 39 6 0 29 chain 4470 chr20 63025520 + 23082893 23082947 MER58A 224 - 104 158 201121 54 chain 19747 chr20 63025520 + 23120563 23120774 L1PA2 6032 + 5810 6021 127965 211 chain 57161 chr20 63025520 + 23148666 23149315 L1PA5 6144 - 12 661 54425 649 chain 202470 chr20 63025520 + 23151844 23154992 L1PB1 5432 - 5 2896 19025 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 16 9 0 15 3 0 16 1 0 39 10 9 11 2 1 50 3 1 10 67 59 250 0 1 40 6 0 170 2 1 10 3 0 106 305 68 276 1 8 178 1 0 254 1 2 117 0 1 20 1 0 194 0 1 122 0 1 244 9 14 66 11 13 9 0 4 95 1 0 209 0 5 3 5 0 31 0 5 46 chain 396313 chr20 63025520 + 23161909 23166681 L1PA6 6164 - 2 6164 10225 6 4 0 324 0 1 57 0 2 1305 2 11 166 0 1369 174 4 6 340 0 4 71 0 1 114 0 2 1407 5 6 276 0 2 349 4 5 164 chain 12987 chr20 63025520 + 23177312 23177479 L1PA16 3655 + 3092 3258 148293 112 2 1 53 chain 23095 chr20 63025520 + 23208539 23208838 MLT2A2 560 + 4 309 115166 272 1 7 26 chain 104950 chr20 63025520 + 23219134 23220605 L1P3 4156 - 17 1524 35511 24 2 1 9 2 0 225 21 22 24 0 10 253 9 13 13 1 5 45 0 1 29 24 45 6 7 0 312 0 4 60 1 0 102 2 0 192 5 8 94 0 1 9 chain 43422 chr20 63025520 + 23223757 23224227 L1PA2 6032 - 176 647 64904 287 0 1 183 chain 15694 chr20 63025520 + 23224227 23224394 L1PA2 6032 + 5856 6023 139289 167 chain 125077 chr20 63025520 + 23242726 23244075 L1PA2 6032 - 0 1350 29368 316 0 1 1033 chain 77204 chr20 63025520 + 23265015 23266225 L1PA11 4918 - 289 1400 44865 18 19 13 5 1 0 8 1 0 5 8 2 11 2 0 13 1 0 15 31 22 9 4 0 19 1 0 17 2 0 72 6 5 49 1 0 15 5 0 49 0 1 87 0 1 132 0 1 268 63 0 165 6 7 102 chain 18777 chr20 63025520 + 23272793 23273004 L1PA4 6152 + 5940 6151 130748 211 chain 138487 chr20 63025520 + 23287018 23288546 L1PA4 6152 + 4606 6135 26393 1227 0 1 301 chain 3900 chr20 63025520 + 23295055 23295117 MLT1H2 457 - 0 63 208855 39 5 6 18 chain 2913 chr20 63025520 + 23317140 23317173 MER51A 677 + 383 416 226821 33 chain 33408 chr20 63025520 + 23329149 23329588 LTR2 463 + 0 463 78550 130 10 14 16 10 31 4 1 0 59 0 1 139 1 0 69 chain 9565 chr20 63025520 + 23381915 23382047 MER85 139 + 1 138 162759 57 5 0 33 0 10 37 chain 6399 chr20 63025520 + 23391054 23391224 L1PA16 3655 + 3465 3619 182035 72 77 61 21 chain 569509 chr20 63025520 + 23406745 23412777 L1HS 6032 + 1 6032 1 2568 1 0 3463 chain 7016 chr20 63025520 + 23438221 23438305 HY3 101 - 0 84 177349 84 chain 18438 chr20 63025520 + 23441413 23441649 PRIMA4_LTR 623 + 0 259 131677 175 1 24 60 chain 32431 chr20 63025520 + 23443758 23444302 L1PA13 3608 - 60 579 80151 7 2 0 6 1 0 13 6 0 4 1 0 10 22 20 20 1 0 20 2 0 5 2 0 47 10 6 55 1 0 42 5 19 10 16 1 103 1 0 32 1 0 99 chain 44974 chr20 63025520 + 23447561 23448074 MER9a1 513 + 0 513 63084 513 chain 380889 chr20 63025520 + 23449518 23454056 HERVK9-int 4720 + 36 4704 10726 13 8 5 4 1 0 66 1 0 6 3 2 14 0 1 15 1 0 1784 0 3 54 1 5 42 1 0 1059 8 14 179 0 1 4 12 11 1024 0 96 80 0 28 158 chain 79872 chr20 63025520 + 23458397 23459275 L1PA3long 6157 - 0 879 43652 338 0 1 540 chain 56677 chr20 63025520 + 23467325 23468316 L1PA14 3548 - 63 1026 54736 20 1 0 10 6 0 23 2 1 16 1 0 7 33 31 34 5 1 114 8 7 54 6 7 4 1 0 19 1 0 6 2 0 13 10 6 107 90 87 229 1 0 153 1 0 14 chain 30081 chr20 63025520 + 23471137 23471544 MLT2A1 477 - 71 473 84560 10 5 0 10 3 1 57 1 0 26 3 1 128 0 4 28 0 1 136 chain 91425 chr20 63025520 + 23476874 23477947 MER11C 1089 - 16 1089 39157 74 9 10 415 2 1 573 chain 3248 chr20 63025520 + 23492348 23492386 MLT1D 503 - 358 396 220047 38 chain 40745 chr20 63025520 + 23494881 23495434 LTR7B 505 + 0 505 68248 199 71 0 28 5 25 5 0 1 150 0 2 95 chain 33182 chr20 63025520 + 23508949 23509390 LTR7 482 - 7 482 78932 181 0 31 77 1 10 61 21 15 100 chain 36246 chr20 63025520 + 23509576 23510069 LTR10F 562 - 0 562 74563 58 1 0 223 1 0 7 0 1 14 5 92 23 18 1 143 chain 20301 chr20 63025520 + 23561019 23561494 L1PB1 5432 - 8 448 126230 4 1 0 14 5 4 11 1 0 21 1 0 24 2 0 14 46 32 4 1 0 15 1 0 44 6 5 11 2 1 39 1 0 12 2 0 11 26 20 21 5 0 10 1 4 50 1 0 6 10 11 52 chain 17266 chr20 63025520 + 23563655 23563886 L1PA8 5853 - 18 245 134878 75 1 0 19 2 1 52 1 0 9 1 0 71 chain 555609 chr20 63025520 + 23569945 23575948 L1PA2 6032 + 7 6032 762 473 0 1 553 0 3 792 0 1 603 0 1 2229 0 1 352 1 0 840 0 16 160 chain 512548 chr20 63025520 + 23595974 23602103 L1PA6 6164 - 5 6162 5917 50 9 0 36 14 2 286 0 1 48 0 1 49 1 0 378 1 0 502 0 4 487 1 0 36 0 9 733 7 8 300 4 6 33 0 1 189 0 1 665 4 0 208 0 4 432 0 10 528 7 13 315 0 17 241 1 0 537 4 10 7 6 0 10 chain 51002 chr20 63025520 + 23639319 23639957 PABL_B 668 - 30 668 58305 81 9 5 267 3 4 135 0 3 143 chain 38859 chr20 63025520 + 23640053 23640565 MLT2A2 560 - 0 560 70934 6 0 4 137 1 12 34 0 2 26 0 32 127 1 0 180 chain 27007 chr20 63025520 + 23674575 23674996 HERVK-int 6823 - 6411 6823 96262 91 0 11 7 12 1 140 0 1 28 2 0 13 1 0 20 1 0 26 1 0 6 9 8 18 1 0 23 4 2 12 1 0 5 chain 70876 chr20 63025520 + 23674996 23675964 LTR5_Hs 974 - 0 974 47972 78 5 7 106 7 7 6 1 0 91 3 5 17 0 1 21 10 9 164 0 4 370 2 1 87 chain 121102 chr20 63025520 + 23675966 23677505 L1P1 4361 + 2841 4318 30667 265 55 1 90 5 0 72 0 1 233 1 0 171 1 0 476 1 0 155 1 0 13 chain 17069 chr20 63025520 + 23677541 23677755 L1PA6 6164 + 5944 6158 135407 214 chain 11951 chr20 63025520 + 23689174 23689310 MER41A 554 + 0 136 152404 136 chain 2668 chr20 63025520 + 23692356 23692485 HAL1-2a_MD 234 + 129 190 230807 17 5 0 10 76 13 21 chain 16295 chr20 63025520 + 23695508 23695728 L1PBa 3878 - 2256 2480 137489 8 2 0 25 0 1 32 0 1 89 1 5 63 chain 128176 chr20 63025520 + 23695986 23697399 L1PA3long 6157 - 245 1658 28529 1413 chain 50420 chr20 63025520 + 23716387 23717017 LTR12_ 688 + 0 680 58697 126 1 50 398 0 1 105 chain 300116 chr20 63025520 + 23717094 23720997 HERV9-int 5642 + 41 4824 13419 241 14 18 79 9 0 273 5 6 72 5 4 61 2 1 63 0 2 150 0 6 73 81 1 16 10 7 952 2 4 510 0 1 199 9 20 210 7 942 108 3 4 385 0 1 65 0 9 274 1 2 5 1 0 7 0 1 11 chain 48994 chr20 63025520 + 23722740 23723401 LTR12_ 688 + 0 688 59755 59 0 41 38 24 8 21 7 6 74 1 2 211 0 1 115 0 1 111 chain 122366 chr20 63025520 + 23737886 23739364 L1P1 4361 + 2841 4318 30262 361 1 0 32 1 2 33 0 1 233 0 1 180 1 0 467 1 0 149 7 6 12 chain 17398 chr20 63025520 + 23739400 23739605 L1PA6 6164 + 5944 6149 134517 205 chain 11709 chr20 63025520 + 23751784 23751920 MER41A 554 + 0 136 153427 136 chain 129046 chr20 63025520 + 23759630 23761317 L1PA8 5853 - 0 1737 28306 92 2 1 19 2 1 47 6 5 9 5 4 67 2 0 46 1 0 60 1 13 46 0 4 381 0 5 36 8 48 379 0 1 225 6 5 25 4 1 22 2 0 90 0 1 104 chain 225133 chr20 63025520 + 23767455 23770073 L1PA4 6152 - 0 2623 17584 67 4 0 272 5 6 514 0 8 1756 chain 224475 chr20 63025520 + 23770073 23772629 L1PA4 6152 + 972 3528 17616 2556 chain 28918 chr20 63025520 + 23780598 23780905 AluYk11 308 + 0 307 89386 307 chain 56994 chr20 63025520 + 23792229 23792916 LTR12_ 688 + 0 688 54533 574 0 1 113 chain 302194 chr20 63025520 + 23792949 23796872 HERV9-int 5642 + 5 4824 13311 277 11 15 82 9 0 274 4 5 68 1 0 47 19 18 28 0 1 4 1 0 35 0 2 143 9 15 62 80 0 28 8 5 953 1 3 293 0 1 100 1 2 319 0 11 214 7 942 110 1 2 451 0 9 19 1 0 155 0 17 97 0 1 11 chain 50715 chr20 63025520 + 23798470 23799132 LTR12_ 688 + 0 688 58492 59 0 41 38 24 8 21 3 2 291 0 1 113 0 1 113 chain 9075 chr20 63025520 + 23799961 23800282 L1PA15-16 3068 - 1733 2057 165192 43 85 87 41 7 9 23 78 77 44 chain 86015 chr20 63025520 + 23809958 23810969 LTR5A 1029 - 0 1025 41149 157 0 2 717 1 14 18 1 0 117 chain 497519 chr20 63025520 + 23816097 23822254 L1PA6 6164 + 0 6156 6979 509 2 1 43 6 7 62 0 1 527 9 1 785 2 1 387 0 2 794 1 0 64 5 6 25 0 1 7 9 8 337 1 3 694 0 1 332 0 1 294 0 1 147 13 13 936 15 17 10 2 0 139 chain 59770 chr20 63025520 + 23829546 23830224 L1PA4 6152 + 5467 6146 52948 435 0 1 243 chain 11504 chr20 63025520 + 23834217 23834353 MER41A 554 + 0 136 154285 136 chain 72133 chr20 63025520 + 23841231 23842195 LTR5_Hs 974 - 0 974 47417 19 4 1 83 20 18 19 8 15 163 1 0 188 0 1 177 0 1 122 1 0 39 10 18 110 chain 131673 chr20 63025520 + 23842405 23844127 L1PA8 5853 - 0 1738 27706 92 2 1 19 2 1 50 5 4 9 1 0 69 2 0 46 1 0 60 1 13 50 7 11 370 6 11 38 0 2 6 7 18 11 10 0 379 0 1 215 8 7 36 2 0 114 0 1 104 chain 550881 chr20 63025520 + 23877488 23883628 L1PA3long 6157 - 1 6148 1331 1836 1 0 1032 0 1 1030 6 7 443 0 2 221 0 3 140 0 1 1431 chain 6160 chr20 63025520 + 23922433 23922505 L1PA4 6152 + 6024 6096 183887 72 chain 5149 chr20 63025520 + 23922506 23922561 L1PA4 6152 + 6096 6151 193550 55 chain 78222 chr20 63025520 + 23963277 23964233 LTR5_Hs 974 + 0 961 44404 198 1 0 261 0 4 196 0 1 116 7 7 21 0 1 156 chain 30828 chr20 63025520 + 24000026 24000448 MLT2A1 477 + 0 465 82817 169 4 1 18 8 8 189 4 0 7 0 50 23 chain 123063 chr20 63025520 + 24000460 24002061 HERVL-int 5654 + 0 5321 30023 69 0 1 579 1 0 130 3 0 5 1 5 608 0 8 11 0 3718 91 15 5 52 1 4 35 chain 25165 chr20 63025520 + 24050604 24050899 AluSg7 307 - 0 296 103937 175 0 1 120 chain 38066 chr20 63025520 + 24095437 24095973 MER41A 554 + 0 554 72038 92 0 1 18 16 17 13 0 8 174 0 1 73 8 12 23 2 0 35 1 6 81 chain 2995 chr20 63025520 + 24112285 24112320 LTR24 460 + 417 452 225117 35 chain 10193 chr20 63025520 + 24190765 24190907 MLT1A1 405 - 23 160 159664 34 0 1 12 1 0 42 4 0 13 1 0 35 chain 28959 chr20 63025520 + 24191582 24191957 L1PA8 5853 - 0 370 89179 93 1 0 19 8 7 43 1 0 83 2 0 44 1 0 18 0 1 62 chain 40555 chr20 63025520 + 24197038 24197894 L1P3 4156 + 2953 3487 68503 195 334 0 47 0 8 210 1 5 69 chain 174044 chr20 63025520 + 24197908 24200213 MER57-int 2662 - 341 2618 21586 410 7 8 4 0 1 42 0 2 13 17 0 246 0 4 124 0 1 62 1 0 311 4 0 81 2 0 197 2 0 306 0 1 91 1 3 103 10 8 104 5 11 57 6 7 16 1 0 9 47 29 26 chain 130257 chr20 63025520 + 24200274 24201921 LTR12C 1709 - 0 1709 28030 241 102 0 186 1 2 52 13 17 94 2 0 6 1 0 41 0 2 72 0 159 323 1 2 512 chain 4883 chr20 63025520 + 24227272 24227327 MER72 723 + 639 694 196446 55 chain 27127 chr20 63025520 + 24243873 24244339 L1PA16 3655 - 36 473 95841 15 39 16 9 4 1 159 9 18 17 15 0 15 13 12 151 0 4 20 chain 40318 chr20 63025520 + 24267094 24267649 L1PA11 4918 - 1559 2117 68753 125 4 5 13 8 9 224 4 3 57 5 7 115 chain 88829 chr20 63025520 + 24267649 24268952 L1PA11 4918 + 3356 4629 40072 316 0 1 237 0 1 214 3 2 38 8 11 134 0 4 15 2 0 64 2 1 13 2 0 68 2 0 13 1 0 10 0 1 9 4 0 9 8 3 10 14 9 15 1 0 13 60 44 18 chain 21257 chr20 63025520 + 24269605 24269833 AluYa5 310 - 4 232 123000 228 chain 54029 chr20 63025520 + 24324582 24325426 L1PA13 3608 + 2656 3482 56341 13 1 0 4 0 1 225 0 1 33 28 30 117 10 12 40 4 1 27 1 0 112 3 1 61 1 0 29 8 6 16 23 11 40 6 7 5 2 0 20 1 0 14 chain 27718 chr20 63025520 + 24358299 24358654 THE1A 353 + 0 353 93978 106 5 4 92 1 0 151 chain 375227 chr20 63025520 + 24377129 24381498 L1PA6 6164 - 5 4371 10911 167 2 0 695 0 4 68 0 1 510 21 1 1281 0 2 240 0 1 4 1 2 111 0 8 737 0 2 532 chain 84799 chr20 63025520 + 24395672 24396756 MER11B 1079 + 0 1079 41593 364 0 1 172 0 1 4 6 5 194 10 0 26 0 2 106 0 1 8 4 5 93 0 1 64 4 3 29 chain 446548 chr20 63025520 + 24492799 24497947 L1PA5 6144 + 3 6144 8863 473 0 3 19 0 10 556 0 1 706 0 1 1441 9 948 835 0 7 255 0 11 22 0 4 361 0 17 471 chain 8225 chr20 63025520 + 24501662 24501767 L1MB3 1562 - 173 277 169806 38 1 0 66 chain 504010 chr20 63025520 + 24532949 24538563 L1PA3long 6157 - 4 6151 6602 248 3 1 1007 0 1 194 0 1 40 0 1 25 1 0 269 0 4 265 0 1 151 0 1 735 1 0 6 0 1 1969 0 1 610 0 526 90 chain 30602 chr20 63025520 + 24552473 24552877 LOR1b 457 + 60 455 83195 85 7 0 72 2 0 238 chain 155082 chr20 63025520 + 24606020 24607773 SVA_D 2077 - 0 2071 23971 136 0 20 484 0 49 168 0 1 33 6 270 888 25 9 13 chain 2971 chr20 63025520 + 24623600 24623633 MADE1 96 + 55 88 225652 33 chain 182623 chr20 63025520 + 24667215 24669801 L1PB1 5432 - 10 2671 20725 18 1 0 13 5 4 17 1 0 23 3 1 14 1 0 5 3 1 18 32 20 7 1 0 45 1 0 15 2 1 51 23 17 6 1 0 12 1 0 20 1 0 11 1 0 106 3 2 29 1 0 153 8 19 79 0 1 93 33 1 688 5 6 190 1 0 51 1 14 193 1 0 97 0 1 228 1 0 261 0 118 12 chain 3419 chr20 63025520 + 24672913 24672956 MER3 215 + 66 109 216774 43 chain 192469 chr20 63025520 + 24692550 24695363 L1PBa 3878 - 928 3778 19817 39 0 2 5 2 0 196 0 1 335 0 24 546 0 2 175 0 3 177 202 0 14 0 193 251 0 2 31 5 9 174 2 1 77 2 0 6 0 2 60 7 8 93 1 0 15 0 2 40 4 0 109 2 0 124 9 7 15 1 0 13 44 62 37 chain 37702 chr20 63025520 + 24708995 24709465 MER4A1 472 - 0 472 72551 361 0 2 109 chain 33305 chr20 63025520 + 24737016 24737486 LTR1 825 - 0 483 78723 41 10 9 43 0 1 85 0 2 5 2 0 18 0 1 197 1 14 28 17 16 23 chain 397352 chr20 63025520 + 24824779 24830602 L1PA8 5853 - 0 5289 10187 33 2 3 4 0 4 48 2 1 19 2 1 38 0 1 4 18 18 69 2 0 46 1 0 33 274 0 109 1 0 65 13 0 307 0 1 38 4 6 230 15 2 403 1 0 36 1 0 36 0 1 155 13 14 242 0 4 22 0 1 126 0 6 66 0 2 721 0 4 72 5 9 58 6 8 302 0 4 197 6 10 244 5 4 475 268 3 439 3 8 113 0 2 5 6 5 14 0 1 278 35 29 29 0 4 6 7 0 51 chain 48698 chr20 63025520 + 24839062 24839702 LTR12_ 688 - 0 688 59962 73 0 4 219 13 11 44 5 2 137 0 24 31 0 25 118 chain 17658 chr20 63025520 + 24858959 24859168 L1PA4 6152 - 9 219 133811 30 0 1 179 chain 8521 chr20 63025520 + 24879889 24880011 MER61-int 3695 - 2030 2153 168188 22 5 6 95 chain 540508 chr20 63025520 + 24881241 24887254 L1PA2 6032 + 3 6032 2732 68 1 2 183 1 0 803 0 10 4940 0 6 17 chain 9518 chr20 63025520 + 24888333 24888624 L1PA11 4918 + 4370 4626 162988 23 2 1 11 6 3 66 2 0 14 7 9 11 4 0 9 8 3 10 13 9 15 1 0 12 22 14 5 1 0 8 1 0 7 18 11 15 chain 55375 chr20 63025520 + 24894475 24895135 PABL_A 660 + 0 660 55475 235 1 0 43 0 1 381 chain 42262 chr20 63025520 + 24899861 24900364 LTR2C 499 + 0 499 66316 42 0 2 5 0 1 390 0 1 7 9 0 14 0 1 36 chain 27054 chr20 63025520 + 24901471 24902342 HERVE-int 4064 + 0 868 12722 811 3 0 57 chain 538441 chr20 63025520 + 24902359 24908542 L1PA4 6152 + 25 6151 3080 290 6 5 240 1 0 16 1 0 135 7 0 125 17 0 173 0 1 235 0 1 2017 31 0 677 0 1 1442 1 0 515 2 1 252 chain 96319 chr20 63025520 + 24908580 24911681 HERVE-int 4064 + 868 4064 12722 92 0 1 4 1 0 221 10 12 253 0 1 14 1 24 43 26 1 79 0 2 220 0 10 141 0 10 374 1 0 4 6 9 1019 2 0 41 0 73 200 2 1 347 chain 22814 chr20 63025520 + 24913367 24913663 LTR2C 499 + 202 499 116512 216 17 18 63 chain 397833 chr20 63025520 + 24924724 24929528 L1PA7 6471 + 1610 6451 10177 59 0 1 83 1 11 11 10 0 259 0 1 406 6 7 68 4 6 350 0 3 12 3 7 942 1 0 166 0 2 32 13 12 18 0 1 30 0 2 805 8 7 229 0 1 186 0 6 272 0 1 8 0 3 48 1 4 302 0 8 159 0 1 312 chain 25677 chr20 63025520 + 24978029 24978445 Tigger2 2703 + 2272 2703 101382 12 0 18 55 0 3 25 0 1 98 6 8 86 9 8 72 36 28 17 chain 125888 chr20 63025520 + 24981838 24983282 L1PA5 6144 - 0 1450 29133 138 0 7 705 1 0 600 chain 21144 chr20 63025520 + 25009315 25009587 AluSc5 308 + 40 306 123393 260 6 0 6 chain 24327 chr20 63025520 + 25065892 25066193 AluSp 311 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63025520 + 25212148 25212608 LTR7B 505 + 0 503 82795 105 0 10 60 0 38 12 34 27 28 0 2 40 1 2 41 1 0 23 0 1 52 14 13 49 chain 81991 chr20 63025520 + 25214473 25215430 LTR5_Hs 974 - 0 962 42762 104 2 0 33 6 13 812 chain 80923 chr20 63025520 + 25221881 25222851 LTR5_Hs 974 + 0 974 43231 285 0 1 19 3 0 262 0 1 251 8 15 37 2 0 103 chain 4344 chr20 63025520 + 25224679 25224942 MER34C_ 573 - 247 522 202685 26 8 0 25 164 183 12 7 8 21 chain 379805 chr20 63025520 + 25241144 25245875 L1P2 5180 + 2 4958 10759 110 48 39 93 30 29 234 1 0 8 1 0 61 22 24 90 4 0 97 2 1 5 1 0 129 0 25 222 4 13 321 0 1 301 1 3 365 16 28 687 6 188 28 0 2 28 7 9 541 0 2 54 4 5 134 8 10 200 0 2 260 1 0 607 chain 125791 chr20 63025520 + 25292804 25294214 SVA_C 1631 + 23 1612 29158 690 0 37 75 17 112 40 0 45 562 5 7 21 chain 543602 chr20 63025520 + 25310587 25316602 L1PA3long 6157 + 0 6156 2254 152 0 1 623 0 128 507 0 9 2934 0 4 1020 1 0 778 chain 3026 chr20 63025520 + 25323730 25323764 Tigger1 2417 + 2219 2253 224461 34 chain 26781 chr20 63025520 + 25329444 25329747 AluY 311 + 8 310 97041 125 1 0 177 chain 22314 chr20 63025520 + 25342928 25343206 AluSg7 307 + 0 285 118855 20 0 6 105 0 1 153 chain 8101 chr20 63025520 + 25349772 25349900 L1MB3 1562 - 650 780 170481 62 1 0 34 14 17 17 chain 24408 chr20 63025520 + 25374768 25375231 LTR3A 482 - 0 451 108037 22 65 66 20 0 2 100 55 44 83 0 1 34 0 1 25 7 1 52 chain 29806 chr20 63025520 + 25383408 25383878 LTR3A 482 - 0 456 85415 32 8 8 41 10 7 128 4 0 8 39 30 80 3 4 34 0 1 83 chain 7240 chr20 63025520 + 25399901 25399984 L1PA8 5853 + 5770 5853 175831 83 chain 24757 chr20 63025520 + 25407159 25407460 AluSp 311 - 10 311 106127 301 chain 23845 chr20 63025520 + 25411162 25411455 AluSp 311 - 11 301 111213 7 2 0 11 2 1 271 chain 26308 chr20 63025520 + 25432203 25432505 L1PA5 6144 - 0 302 98799 302 chain 4005 chr20 63025520 + 25438515 25438572 MIR 256 - 123 184 207312 34 1 5 22 chain 8482 chr20 63025520 + 25493055 25493204 MSTA 426 + 145 296 168395 7 0 4 48 0 16 8 30 12 56 chain 90781 chr20 63025520 + 25511183 25512257 MER11C 1089 - 16 1089 39365 109 0 1 97 0 1 196 1 0 76 7 8 341 6 3 241 chain 3375 chr20 63025520 + 25523254 25523333 MER41A 554 + 382 465 217590 16 7 11 22 10 11 4 1 0 19 chain 3118 chr20 63025520 + 25524309 25524346 MER51A 677 + 194 231 222587 37 chain 6594 chr20 63025520 + 25528321 25528402 MLT1B 390 - 274 355 180506 81 chain 154646 chr20 63025520 + 25541657 25543426 SVA_D 2077 + 0 2077 24027 13 2 4 18 1 18 323 0 4 540 1 265 34 0 1 168 0 1 4 0 1 4 21 19 27 0 1 476 0 20 131 1 0 5 chain 104533 chr20 63025520 + 25563467 25564786 L1PA8 5853 + 4544 5853 35613 257 0 1 51 3 8 29 0 2 117 0 2 69 0 1 5 5 1 477 1 0 44 2 0 28 0 1 42 10 0 11 3 0 50 2 1 19 1 0 93 chain 3536 chr20 63025520 + 25567116 25567195 Tigger4a 237 + 93 176 214774 11 7 0 11 0 7 10 11 15 29 chain 41977 chr20 63025520 + 25571767 25572268 LTR17 781 - 0 526 66650 12 0 1 27 4 26 90 0 1 296 0 1 72 chain 26329 chr20 63025520 + 25578318 25578673 THE1A 353 + 0 353 98704 13 2 0 35 6 7 41 1 0 257 chain 24498 chr20 63025520 + 25607389 25607831 LTR3A 482 - 33 477 107552 42 1 0 4 0 1 4 25 29 20 0 1 88 85 80 64 5 7 104 chain 95727 chr20 63025520 + 25611092 25612234 L1PA6 6164 - 2 1142 37887 156 3 4 211 0 1 135 3 0 280 9 7 335 0 1 10 chain 194520 chr20 63025520 + 25616855 25619519 MER4-int 2692 - 0 2691 19626 6 1 0 91 0 1 17 15 19 14 5 6 249 2 7 7 2 0 10 7 0 12 14 17 55 0 3 177 1 0 50 0 1 60 0 3 22 0 1 10 0 1 70 9 10 156 0 1 155 2 3 207 1 0 13 0 1 36 0 5 101 0 3 43 9 12 18 0 2 88 11 10 496 0 1 95 0 6 202 4 1 19 1 0 63 2 0 25 1 0 10 chain 33849 chr20 63025520 + 25624234 25625322 MER4A1 472 - 5 472 77852 82 632 0 25 0 1 107 0 22 32 11 0 168 2 1 29 chain 2448 chr20 63025520 + 25664129 25664159 L1PA3long 6157 + 5279 5309 233726 30 chain 14166 chr20 63025520 + 25664159 25664332 L1PA3long 6157 + 5312 5486 143997 73 3 4 97 chain 60376 chr20 63025520 + 25664332 25664999 L1PA3long 6157 + 5490 6157 52644 667 chain 59441 chr20 63025520 + 25665031 25665767 L1PA7 6471 + 5730 6470 53146 476 8 7 109 0 1 7 1 0 122 1 6 12 chain 22742 chr20 63025520 + 25675630 25675900 AluSx1 309 + 6 276 116862 270 chain 496302 chr20 63025520 + 25681351 25687793 L1PA7 6471 - 6 6471 7051 6 3 0 813 16 22 10 0 1 580 0 6 78 1 0 17 0 1 107 0 4 6 4 0 143 10 18 1107 7 11 39 1 0 10 7 6 695 1 0 77 0 4 181 6 10 28 1 0 72 0 1 99 0 1 95 11 1 261 7 8 43 1 0 86 4 0 54 7 5 124 0 2 111 0 1 447 0 1 170 15 15 12 19 20 74 5 4 95 3 4 169 10 11 96 2 0 142 27 23 34 4 3 119 29 28 9 0 13 32 chain 400039 chr20 63025520 + 25689140 25694254 L1PA7 6471 - 7 5114 10095 840 1 4 756 11 12 180 4 8 643 14 12 83 0 3 137 1 0 257 0 1 42 27 10 36 0 3 194 4 0 6 0 4 343 10 14 175 21 5 54 1 3 118 0 2 189 1 2 4 1 0 186 0 1 96 1 2 77 0 2 187 11 13 205 9 8 185 0 1 4 chain 548700 chr20 63025520 + 25694292 25700449 L1PA3long 6157 - 2 6153 1615 57 1 0 1314 2 0 420 0 4 2029 0 1 1271 9 0 322 0 1 732 chain 77174 chr20 63025520 + 25700475 25701497 L1P2 5180 - 4162 5178 44872 225 1 0 6 1 0 272 1 0 54 1 0 214 1 0 53 1 0 43 2 1 81 2 3 64 chain 71590 chr20 63025520 + 25708028 25708836 L1PA3long 6157 - 2017 2825 47424 808 chain 183791 chr20 63025520 + 25708836 25710855 L1PA3long 6157 + 4134 6157 20608 5 3 0 221 0 4 924 0 4 807 1 0 58 chain 2925 chr20 63025520 + 25710978 25711012 L1M2 1805 - 1520 1554 226579 34 chain 3076 chr20 63025520 + 25769413 25769448 MIRc 230 - 99 134 223382 35 chain 197978 chr20 63025520 + 25789152 25791443 L1PA3long 6157 + 3860 6157 19358 589 8 3 277 1 0 64 0 2 72 0 9 665 4 5 611 chain 4537 chr20 63025520 + 25824882 25824934 MER21B 843 - 771 823 200384 52 chain 22102 chr20 63025520 + 25864111 25864389 L1PA3long 6157 + 5878 6157 119773 136 1 2 141 chain 149605 chr20 63025520 + 25868451 25870835 L1PA8 5853 + 3748 5848 24672 6 0 1 123 0 1 77 1 0 7 11 26 117 0 2 107 5 3 122 6 2 145 1 2 227 0 13 44 13 15 5 0 2 214 1 3 50 307 0 25 0 1 6 2 1 335 0 1 133 1 0 44 20 18 53 1 0 14 16 15 34 1 0 18 1 0 72 4 1 15 chain 6128 chr20 63025520 + 25899539 25899607 L1PA3long 6157 - 99 167 184208 68 chain 8369 chr20 63025520 + 25899609 25899698 L1PA3long 6157 + 6067 6156 169032 89 chain 188475 chr20 63025520 + 25915458 25917643 L1PA5 6144 - 31 2225 20196 36 0 8 70 1 0 701 4 0 286 0 1 571 0 1 93 1 5 422 chain 24969 chr20 63025520 + 25936302 25936720 MER57A1 433 + 11 433 104966 89 1 0 172 52 56 23 34 35 47 chain 4457 chr20 63025520 + 25975949 25976070 L1MB8 1703 + 1465 1588 201266 42 56 58 23 chain 2578 chr20 63025520 + 25991588 25991709 LTR25 836 + 506 544 231937 25 83 0 13 chain 4537 chr20 63025520 + 25992247 25992299 MER21B 843 + 20 72 200383 52 chain 4346 chr20 63025520 + 26003591 26003641 L1MB8 1703 + 1468 1518 202636 50 chain 197978 chr20 63025520 + 26025734 26028025 L1PA3long 6157 - 0 2297 19359 611 4 5 665 0 9 72 0 2 64 1 0 277 8 3 589 chain 25113 chr20 63025520 + 26034349 26034718 THE1A 353 - 0 353 104209 62 17 1 16 12 11 4 0 1 31 0 1 116 1 0 110 chain 28615 chr20 63025520 + 26061338 26061640 AluYb8 318 + 0 302 90675 302 chain 65549 chr20 63025520 + 26092066 26092792 L1PA3long 6157 - 2 728 50316 726 chain 126048 chr20 63025520 + 26097541 26098981 L1P1 4361 + 2531 3980 29082 154 1 0 321 0 9 149 0 1 815 chain 10375 chr20 63025520 + 26113830 26113959 MER85 139 - 0 138 158806 110 0 9 19 chain 12569 chr20 63025520 + 26166699 26166848 L1PA4 6152 + 5995 6145 149967 12 1 2 136 chain 136747 chr20 63025520 + 26183145 26184681 L1PA4 6152 - 1252 2787 26687 1126 0 1 91 2 0 317 chain 114061 chr20 63025520 + 26184681 26185952 L1PA4 6152 + 4867 6143 33051 436 0 6 589 1 0 245 chain 544446 chr20 63025520 + 26214313 26220345 L1PA2 6032 + 0 6031 2149 257 2 1 300 0 1 4 1 0 330 2 1 1311 0 1 842 0 1 2817 1 6 5 5 0 135 1 0 19 chain 41935 chr20 63025520 + 26225546 26226037 L1PA5 6144 + 5641 6131 66705 244 1 0 246 chain 4960 chr20 63025520 + 26227045 26227099 L1PA2 6032 - 1090 1144 192659 54 chain 100538 chr20 63025520 + 26227099 26228192 L1PA2 6032 + 4933 6027 36620 1019 0 1 74 chain 153881 chr20 63025520 + 26240361 26242745 L1PA8 5853 - 5 2106 24106 15 4 1 72 1 0 18 1 0 43 13 12 8 1 0 71 2 0 44 1 0 498 307 0 54 1 3 214 0 2 5 13 15 44 0 13 32 0 2 193 1 2 145 6 2 122 5 3 101 6 8 117 11 26 7 1 0 77 0 1 123 0 1 7 chain 23883 chr20 63025520 + 26246806 26247085 L1PA3long 6157 - 0 279 111006 279 chain 7881 chr20 63025520 + 26256924 26257040 THE1A-int 1579 - 0 98 171807 31 18 0 67 chain 85682 chr20 63025520 + 26270390 26271432 L1PA3long 6157 + 5113 6156 41276 219 7 8 816 chain 192989 chr20 63025520 + 26281723 26283854 L1PA2 6032 - 7 2139 19775 1271 0 1 860 chain 143462 chr20 63025520 + 26283854 26285418 L1PA2 6032 + 2312 3876 25552 1564 chain 40438 chr20 63025520 + 29419569 29420135 L1PA8 5853 + 5297 5853 68679 76 2 1 141 0 1 48 1 0 44 2 0 71 1 0 10 1 0 53 2 1 15 4 3 71 4 1 20 chain 7505 chr20 63025520 + 29448962 29449042 L1PA3long 6157 + 6076 6156 174132 80 chain 6457 chr20 63025520 + 29460791 29460898 MER96B 391 + 228 337 181584 61 0 11 11 8 0 22 1 0 4 chain 187405 chr20 63025520 + 29464701 29466905 L1PA4 6152 - 18 2226 20301 94 0 1 43 1 0 669 25 21 4 0 1 282 0 1 174 0 1 396 0 1 93 1 5 422 chain 23209 chr20 63025520 + 29472419 29472668 L1HS 6032 - 2 251 114645 249 chain 81943 chr20 63025520 + 29472668 29473544 L1HS 6032 + 4900 5776 42785 876 chain 9653 chr20 63025520 + 29486544 29486675 MER4E 760 - 0 128 162335 90 3 0 38 chain 15939 chr20 63025520 + 29498093 29498268 L1PA3long 6157 - 338 513 138552 175 chain 28744 chr20 63025520 + 29498268 29498596 L1PA3long 6157 + 5829 6157 90156 328 chain 148357 chr20 63025520 + 29525676 29527377 SVA_D 2077 - 17 2075 24832 610 0 1 4 1 0 22 2 5 19 4 6 4 0 1 36 0 1 4 0 1 38 9 217 37 1 138 34 0 4 876 chain 3634 chr20 63025520 + 29531839 29531883 MER5B 177 - 42 86 213070 44 chain 7045 chr20 63025520 + 29543692 29543796 HY1 111 - 0 105 177152 30 9 10 65 chain 27140 chr20 63025520 + 29573716 29574086 THE1A 353 + 0 353 95791 110 1 0 180 17 1 62 chain 32030 chr20 63025520 + 29607726 29608792 L1PA16 3655 - 36 663 80819 16 32 12 14 16 14 142 5 6 30 419 2 92 2 0 6 2 0 5 0 2 13 10 11 8 1 0 5 0 1 10 38 37 49 46 47 105 chain 166395 chr20 63025520 + 29638867 29641199 SVA_D 2077 + 8 2069 22473 556 0 40 268 40 0 44 2 1 26 6 0 5 83 0 86 8 10 15 49 0 143 0 4 164 224 0 501 7 93 105 chain 4626 chr20 63025520 + 29639814 29639897 SVA_D 2077 + 992 1175 81761 15 0 100 68 chain 9358 chr20 63025520 + 29640362 29640470 SVA_D 2077 + 1067 1175 133241 108 chain 6049 chr20 63025520 + 29640470 29640556 SVA_D 2077 + 948 1034 127696 86 chain 3073 chr20 63025520 + 29641293 29641393 LTR40a 516 + 276 413 223527 4 1 0 15 49 87 31 chain 274899 chr20 63025520 + 29642270 29645443 L1PA4 6152 + 2956 6143 14931 204 0 1 191 7 8 1944 0 4 169 1 2 207 0 6 116 1 2 333 chain 471084 chr20 63025520 + 29850848 29856390 L1PA5 6144 - 3 5531 8000 13 3 0 979 0 1 46 0 1 4 1 0 625 1 2 125 0 4 356 0 8 97 2 1 209 3 0 190 0 1 309 1 0 6 0 1 895 0 5 379 2 4 27 0 1 10 0 1 29 0 1 642 9 0 20 11 13 184 24 0 24 1 0 315 chain 4198 chr20 63025520 + 29856816 29856879 L1PB1 5432 + 5353 5413 204574 17 1 0 21 1 0 13 1 0 9 chain 13817 chr20 63025520 + 29874670 29874847 L1PA8 5853 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63025520 + 29949805 29950351 L1MA8 2339 + 1846 2331 107233 82 4 0 26 3 1 35 6 0 19 1 0 27 5 12 45 7 0 8 32 18 31 11 10 33 10 4 36 2 0 23 1 0 13 48 30 11 6 0 21 chain 18085 chr20 63025520 + 29954052 29954285 AluSz6 309 + 57 288 132632 225 2 0 6 chain 11787 chr20 63025520 + 29971998 29972162 L1MA3 4352 + 4119 4277 153102 116 4 0 23 2 0 19 chain 19628 chr20 63025520 + 29984822 29985080 L1PA8 5853 - 0 253 128314 84 10 9 68 1 0 13 1 0 71 2 0 8 chain 20492 chr20 63025520 + 29994797 29995058 AluSc8 310 + 29 290 125652 261 chain 173231 chr20 63025520 + 30014069 30016234 SVA_D 2077 + 12 2073 21687 4 1 0 8 8 0 4 1 0 9 1 0 871 129 0 4 2 0 32 48 17 58 32 0 67 0 3 214 0 98 672 chain 8454 chr20 63025520 + 30014976 30015105 SVA_D 2077 + 1091 1220 77419 129 chain 17604 chr20 63025520 + 30039207 30039543 MSTA 426 + 7 362 133980 136 10 16 31 85 84 27 1 15 46 chain 164961 chr20 63025520 + 30057256 30060256 SVA_D 2077 - 4 2071 22658 591 0 98 173 49 0 81 0 100 81 1078 5 27 3 1 8 2 0 871 1 0 9 1 0 6 4 2 10 1 0 4 chain 3470 chr20 63025520 + 30058020 30058069 SVA_D 2077 - 1044 1093 81746 49 chain 11959 chr20 63025520 + 30058248 30058484 SVA_F 1814 - 523 659 85291 17 1 0 60 99 0 59 chain 8276 chr20 63025520 + 30058326 30058425 SVA_F 1814 - 776 889 126935 41 0 3 32 0 15 10 4 0 12 chain 33648 chr20 63025520 + 30058523 30059210 SVA_F 1814 - 523 920 78172 17 1 0 199 304 0 81 1 0 32 0 16 52 chain 2382 chr20 63025520 + 30058790 30058837 SVA_F 1814 - 902 953 85291 26 1 5 20 chain 1669 chr20 63025520 + 30058939 30059003 SVA_F 1814 - 810 889 177377 39 2 17 23 chain 3451 chr20 63025520 + 30059003 30059044 SVA_F 1814 - 523 563 135585 17 7 6 17 chain 3844 chr20 63025520 + 30059210 30059249 SVA_F 1814 - 871 910 202755 39 chain 2561 chr20 63025520 + 30059282 30059309 SVA_D 2077 - 616 643 190931 27 chain 25085 chr20 63025520 + 30079268 30079574 AluSp 311 - 7 311 104382 172 2 0 132 chain 23687 chr20 63025520 + 30127324 30127611 AluSc 308 + 8 294 112106 123 2 0 64 1 2 97 chain 4405 chr20 63025520 + 30165565 30166048 LTR12C 1709 - 277 744 201883 33 411 395 39 chain 4454 chr20 63025520 + 30168902 30168982 U6 107 + 11 94 201296 36 16 19 28 chain 22085 chr20 63025520 + 30170882 30171179 AluSc 308 + 0 293 119862 19 2 1 171 7 4 98 chain 25107 chr20 63025520 + 30178293 30178593 AluSq2 311 - 10 311 104248 167 0 1 133 chain 24089 chr20 63025520 + 30187273 30187573 AluY 311 + 11 296 109804 64 6 0 51 9 0 170 chain 23740 chr20 63025520 + 30203068 30203358 AluSp 311 - 12 303 111829 245 5 6 40 chain 24607 chr20 63025520 + 30206187 30206492 AluSp 311 + 11 310 106956 114 3 0 7 3 0 178 chain 49328 chr20 63025520 + 30215840 30216402 L1PA4 6152 + 5590 6152 59499 448 0 1 15 1 0 98 chain 12267 chr20 63025520 + 30228838 30228982 L1PA4 6152 + 5995 6151 151122 106 0 12 38 chain 34754 chr20 63025520 + 30235423 30236271 MLT2A2 560 - 0 546 76538 6 0 4 124 4 20 57 4 6 58 10 0 54 0 1 16 360 45 155 chain 4159 chr20 63025520 + 30251595 30251650 MER39 703 + 371 432 205112 22 0 2 15 0 4 18 chain 22010 chr20 63025520 + 30256440 30256697 AluSp 311 - 45 301 120179 171 1 0 85 chain 21857 chr20 63025520 + 30275172 30275504 AluSc8 310 + 0 309 120793 47 34 10 79 0 1 101 1 3 13 8 6 49 chain 14164 chr20 63025520 + 30303807 30304057 MER34C2 569 + 316 557 144002 21 13 23 9 21 0 85 4 0 14 1 6 22 0 1 60 chain 13879 chr20 63025520 + 30331031 30331205 MER2 342 - 64 237 144983 10 0 1 15 2 0 147 chain 2947 chr20 63025520 + 30348637 30348668 U2 167 + 0 31 226119 31 chain 8723 chr20 63025520 + 30356921 30357018 L1PA3long 6157 + 6060 6157 167076 97 chain 30071 chr20 63025520 + 30363864 30364182 AluYb8 318 - 0 318 84601 318 chain 8215 chr20 63025520 + 30384825 30384916 L1PA4 6152 + 6061 6152 169860 91 chain 5186 chr20 63025520 + 30428055 30428120 MIRb 242 - 109 174 193178 65 chain 8195 chr20 63025520 + 30443759 30443887 L1PB1 5432 - 5 124 169978 4 1 0 19 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 chain 5570 chr20 63025520 + 30484080 30484144 MER65B 503 - 439 503 189378 64 chain 4854 chr20 63025520 + 30489056 30489173 U1 164 + 0 118 196733 19 44 45 54 chain 18144 chr20 63025520 + 30490977 30491466 L1MB7 1623 - 418 929 132478 8 5 0 9 3 1 10 0 2 67 105 128 18 61 57 30 7 4 119 13 23 4 0 1 30 chain 47272 chr20 63025520 + 30505547 30506095 LTR19B 566 - 0 549 60988 52 0 1 35 3 2 184 0 1 274 chain 69743 chr20 63025520 + 30509006 30509784 L1PA5 6144 + 5364 6142 48496 778 chain 2873 chr20 63025520 + 30523784 30523820 MIRb 242 + 95 133 227474 14 0 2 22 chain 3490 chr20 63025520 + 30592895 30592958 MLT1J 494 + 93 157 215508 36 14 15 13 chain 9001 chr20 63025520 + 30593401 30593511 MLT1B 390 - 16 126 165591 110 chain 44533 chr20 63025520 + 30593511 30594062 MER41A 554 - 0 554 63545 156 3 4 226 0 1 46 0 1 120 chain 5957 chr20 63025520 + 30596178 30596240 5S 121 + 28 90 185617 62 chain 13989 chr20 63025520 + 30627548 30627739 L1PA8 5853 + 5666 5853 144611 13 1 0 14 1 0 47 2 1 19 2 1 92 chain 4928 chr20 63025520 + 30706919 30706979 MSTB1 431 - 15 74 195959 9 1 0 50 chain 164560 chr20 63025520 + 30709006 30710982 SVA_D 2077 - 0 2073 22735 676 9 8 4 0 1 48 1 0 32 0 1 8 10 37 4 0 1 160 2 1 52 8 10 41 0 1 38 0 36 10 3 0 104 40 0 79 0 37 611 0 25 12 4 16 20 chain 12042 chr20 63025520 + 30716429 30716591 L1PB4 2604 - 54 218 152019 58 3 5 101 chain 5448 chr20 63025520 + 30757201 30757284 MSTB1 431 + 348 431 190545 19 2 1 33 1 2 28 chain 130834 chr20 63025520 + 30763174 30765401 SVA_F 1814 + 11 1471 27900 844 33 34 57 657 16 206 127 0 303 chain 2944 chr20 63025520 + 30764018 30764051 SVA_F 1814 + 1096 1129 134295 33 chain 18181 chr20 63025520 + 30764109 30764413 SVA_F 1814 + 962 1138 98770 27 145 17 132 chain 6960 chr20 63025520 + 30764136 30764214 SVA_F 1814 + 1214 1291 134295 60 1 0 17 chain 29685 chr20 63025520 + 30764413 30764725 SVA_F 1814 + 962 1274 85884 312 chain 8129 chr20 63025520 + 30764971 30765098 SVA_F 1814 + 928 992 118160 16 81 18 30 chain 2199 chr20 63025520 + 30764987 30765010 SVA_F 1814 + 1135 1158 207165 23 chain 3022 chr20 63025520 + 30765016 30765068 SVA_F 1814 + 1037 1089 132675 52 chain 18012 chr20 63025520 + 30766765 30767078 L1MB3 1562 - 955 1275 132825 35 1 0 34 31 32 5 1 0 6 0 3 59 20 25 121 chain 6131 chr20 63025520 + 30852206 30852281 MER3 215 - 140 215 184157 75 chain 22260 chr20 63025520 + 30861207 30861483 AluSz6 309 + 20 295 119076 100 1 0 175 chain 12521 chr20 63025520 + 30890710 30890916 MER30 238 + 1 238 150159 15 0 18 74 4 0 6 16 36 4 0 1 19 5 0 45 0 1 18 chain 27231 chr20 63025520 + 30899238 30899532 AluYa5 310 + 18 310 95495 105 2 0 187 chain 24113 chr20 63025520 + 30931843 30932129 AluY 311 + 0 294 109677 47 0 6 79 0 1 5 1 2 154 chain 7595 chr20 63025520 + 30939018 30939101 LTR12F 595 + 402 485 173582 83 chain 3754 chr20 63025520 + 30953215 30953258 5S 121 - 78 121 211077 43 chain 7754 chr20 63025520 + 30984693 30984820 MER30 238 - 8 125 172577 70 1 7 20 11 0 12 5 0 8 chain 28470 chr20 63025520 + 30986402 30986711 AluYa5 310 - 1 310 91307 309 chain 8718 chr20 63025520 + 30989658 30989781 MER44A 345 - 97 234 167098 70 0 16 43 2 0 8 chain 27352 chr20 63025520 + 31008683 31009037 L1PA8 5853 + 5505 5853 95106 59 1 0 45 2 0 24 0 1 48 1 0 5 2 1 52 2 1 19 1 0 93 chain 3429 chr20 63025520 + 31161422 31161458 MIRc 230 - 98 134 216583 36 chain 5163 chr20 63025520 + 31204767 31204828 MER20 218 - 75 135 193417 55 1 0 5 chain 11843 chr20 63025520 + 31220647 31220859 THE1C 375 - 36 261 152858 9 1 0 81 44 55 7 0 1 7 4 6 59 chain 4467 chr20 63025520 + 31250045 31250094 MER66C 541 + 370 419 201154 49 chain 24440 chr20 63025520 + 31272144 31272436 AluSc8 310 + 11 306 107866 120 1 4 171 chain 3899 chr20 63025520 + 31287670 31287721 MLT2D 439 + 144 199 208862 34 0 1 10 0 3 7 chain 167579 chr20 63025520 + 31310979 31312768 SVA_F 1814 + 10 1814 22328 871 1 0 55 0 1 10 0 15 165 0 1 676 1 0 10 chain 4357 chr20 63025520 + 31315361 31315433 MER5C 305 - 153 235 202474 12 7 17 53 chain 23605 chr20 63025520 + 31322014 31322297 AluSg7 307 + 15 293 112550 116 0 1 152 6 0 9 chain 8770 chr20 63025520 + 31325210 31325326 AluJb 308 + 155 292 166812 69 0 24 37 3 0 7 chain 25135 chr20 63025520 + 31332353 31332649 AluSp 311 + 0 299 104092 91 0 3 205 chain 19335 chr20 63025520 + 31360680 31360913 AluSp 311 - 11 300 129126 66 0 56 36 0 1 29 1 0 101 chain 36639 chr20 63025520 + 31375554 31376014 LTR7 482 - 10 482 74044 80 0 1 96 0 31 219 20 0 45 chain 24871 chr20 63025520 + 31401067 31401357 AluY 311 + 9 301 105509 38 1 2 83 0 1 168 chain 18850 chr20 63025520 + 31429276 31429486 L1PA3long 6157 - 2 212 130516 210 chain 11925 chr20 63025520 + 31466311 31466438 AluYb8 318 - 7 134 152498 127 chain 5512 chr20 63025520 + 31468465 31468537 MER21B 843 - 357 437 189926 39 0 8 33 chain 16067 chr20 63025520 + 31489030 31489251 MER30 238 - 2 238 138159 37 3 0 70 4 22 107 chain 25940 chr20 63025520 + 31508213 31508568 THE1A 353 - 0 353 100249 95 1 0 64 0 1 42 2 1 36 6 5 109 chain 46492 chr20 63025520 + 31514326 31514826 L1PA3long 6157 - 8 508 61608 500 chain 41523 chr20 63025520 + 31538210 31538759 LTR19B 566 - 0 566 67254 15 21 29 8 3 0 16 0 5 201 0 1 116 5 10 23 8 9 133 chain 4057 chr20 63025520 + 31538857 31538964 L1ME1 1623 + 1128 1276 206518 18 45 86 44 chain 26433 chr20 63025520 + 31562446 31562830 LTR7 482 + 0 469 98294 79 7 57 88 0 1 26 12 44 12 0 1 45 12 13 103 chain 49146 chr20 63025520 + 31562915 31563473 LTR6B 557 + 0 555 59635 50 1 0 220 2 0 285 chain 33984 chr20 63025520 + 31702200 31702621 LTR12C 1709 + 1293 1707 77638 247 1 0 7 5 0 80 1 0 80 chain 137284 chr20 63025520 + 31702734 31704267 SVA_D 2077 + 6 2062 26592 21 7 1 617 0 1 115 0 40 115 1 490 214 1 0 442 chain 9388 chr20 63025520 + 31705710 31705844 LOR1-int 1871 - 628 760 163622 111 3 1 20 chain 129327 chr20 63025520 + 31709607 31711177 THE1A-int 1579 + 0 1574 28235 135 0 2 145 0 2 28 1 0 43 1 0 439 0 1 158 1 2 619 chain 36187 chr20 63025520 + 31716183 31717154 L1PB1 5432 - 25 613 74648 8 15 0 8 1 0 21 1 0 24 2 0 11 11 8 30 316 20 40 1 0 16 2 1 12 1 0 41 27 20 12 13 0 4 36 0 17 3 0 11 3 0 52 1 0 52 4 5 175 chain 47738 chr20 63025520 + 31758584 31759179 L1PA8 5853 - 1024 1634 60559 23 0 6 49 0 12 356 0 1 12 1 0 36 3 0 115 chain 80658 chr20 63025520 + 31759179 31760210 L1PA8 5853 + 4831 5853 43319 179 2 0 549 6 5 44 2 0 70 19 17 45 2 1 19 1 0 93 chain 22502 chr20 63025520 + 31764902 31765176 AluSz6 309 + 24 298 118021 274 chain 2929 chr20 63025520 + 31770887 31770984 MIRb 242 + 71 176 226511 29 51 59 17 chain 5225 chr20 63025520 + 31771254 31771317 MLT1J 494 + 96 159 192774 63 chain 149292 chr20 63025520 + 31772337 31774048 SVA_D 2077 - 17 2073 24717 298 0 1 316 1 0 12 0 176 49 0 78 71 11 25 47 0 1 4 0 38 26 2 0 22 0 40 852 chain 23594 chr20 63025520 + 31831749 31832158 L1PA15 4387 + 3966 4367 112613 76 0 1 9 0 2 46 13 12 18 1 0 55 1 0 18 6 8 6 1 0 39 17 14 46 18 13 27 1 0 11 chain 5420 chr20 63025520 + 31842214 31842279 L1MA2 4263 - 231 296 190797 65 chain 8529 chr20 63025520 + 31854435 31854537 MLT1B 390 - 16 118 168136 102 chain 5452 chr20 63025520 + 31932320 31932387 LTR43B 570 - 9 76 190512 67 chain 8337 chr20 63025520 + 31964758 31964858 Tigger1 2417 - 1237 1337 169196 100 chain 111244 chr20 63025520 + 31976389 31977688 SVA_C 1631 + 0 1292 33877 17 7 0 5 1 2 10 3 1 312 0 1 500 21 22 8 0 1 71 2 0 44 0 1 23 1 0 274 chain 17222 chr20 63025520 + 31980154 31980396 MER30 238 + 0 238 134995 38 0 1 68 8 9 74 6 0 48 chain 5958 chr20 63025520 + 31987897 31988029 MER1B 344 - 166 303 185612 19 30 32 33 10 13 40 chain 25325 chr20 63025520 + 32001774 32002075 AluSp 311 + 12 311 103092 275 2 0 24 chain 24983 chr20 63025520 + 32089436 32089745 AluSc5 308 - 1 308 104894 243 2 0 64 chain 117945 chr20 63025520 + 32097649 32099332 L1PA6 6164 - 20 1389 31825 151 2 0 6 0 2 193 315 0 394 0 1 622 chain 149704 chr20 63025520 + 32123488 32125339 SVA_D 2077 - 12 2077 24660 627 1 225 159 0 1 9 0 53 30 22 65 180 4 11 76 80 0 80 40 0 193 0 1 320 7 12 23 chain 3608 chr20 63025520 + 32124596 32124641 SVA_D 2077 - 1332 1377 195462 45 chain 3812 chr20 63025520 + 32124756 32124796 SVA_D 2077 - 1448 1488 181393 40 chain 24976 chr20 63025520 + 32139025 32139311 AluSp 311 - 15 301 104928 286 chain 15959 chr20 63025520 + 32155202 32155825 MER44A 345 + 0 345 138489 16 59 93 54 8 15 32 318 0 124 1 0 11 chain 76191 chr20 63025520 + 32185663 32186705 MER11C 1089 - 25 1089 45367 144 1 0 54 1 2 89 5 6 23 1 4 4 0 1 38 1 0 4 2 6 111 47 46 146 1 0 65 0 4 62 0 9 131 0 3 112 chain 24376 chr20 63025520 + 32278290 32278580 AluSp 311 - 12 302 108215 290 chain 180681 chr20 63025520 + 32286302 32288520 SVA_D 2077 + 42 2076 20923 642 5 0 232 2 1 30 13 0 45 1 0 41 3 5 209 48 0 141 0 1 2 37 0 10 41 0 80 47 0 336 0 6 253 chain 4107 chr20 63025520 + 32287525 32287573 SVA_D 2077 + 1423 1472 70094 15 0 1 33 chain 1859 chr20 63025520 + 32287716 32287753 SVA_D 2077 + 1088 1125 97218 37 chain 2060 chr20 63025520 + 32287763 32287804 SVA_D 2077 + 1135 1176 97218 41 chain 1960 chr20 63025520 + 32287884 32287931 SVA_D 2077 + 1080 1129 119200 11 0 2 36 chain 47891 chr20 63025520 + 32288543 32289225 SVA_D 2077 + 0 649 60563 19 5 0 156 8 9 137 1 8 231 100 64 25 chain 8671 chr20 63025520 + 32289100 32289200 SVA_D 2077 + 600 700 85056 100 chain 19076 chr20 63025520 + 32289225 32289445 SVA_D 2077 + 725 944 85056 191 2 1 27 chain 54618 chr20 63025520 + 32289468 32290120 SVA_D 2077 + 1407 2059 55957 652 chain 24092 chr20 63025520 + 32335882 32336165 AluSc 308 - 18 298 109784 9 3 0 271 chain 2775 chr20 63025520 + 32350148 32350178 MER44D 709 - 611 641 229097 30 chain 29820 chr20 63025520 + 32350337 32350722 L1PA8 5853 - 0 378 85373 93 1 0 19 2 1 45 3 2 14 1 0 70 2 0 45 1 0 89 chain 4114 chr20 63025520 + 32430069 32430117 5S 121 - 73 121 205717 48 chain 14035 chr20 63025520 + 32474073 32474270 MER1A 529 + 316 521 144435 112 1 5 26 4 8 54 chain 3658 chr20 63025520 + 32482224 32482265 LTR16A 446 - 27 68 212606 41 chain 29426 chr20 63025520 + 32492233 32492540 AluYb9 318 + 0 307 86962 307 chain 15720 chr20 63025520 + 32504826 32505038 MSTC 436 + 0 220 139209 144 18 26 50 chain 6040 chr20 63025520 + 32506330 32506416 MADE1 96 + 0 96 184891 32 3 13 51 chain 19379 chr20 63025520 + 32521873 32522131 AluSp 311 + 9 276 129002 38 6 10 101 0 5 113 chain 29624 chr20 63025520 + 32522182 32522560 MLT2A1 477 + 0 383 86137 169 4 1 94 6 12 37 0 2 68 chain 6921 chr20 63025520 + 32526389 32526479 MER5A1 166 + 63 155 178026 31 0 3 43 1 0 15 chain 10090 chr20 63025520 + 32539250 32539402 MSTA 426 + 0 184 160133 100 17 49 35 chain 4691 chr20 63025520 + 32545024 32545084 L1MB7 1623 + 720 780 198618 60 chain 26055 chr20 63025520 + 32553402 32553750 LTR12 884 + 0 858 99808 57 14 524 277 chain 4581 chr20 63025520 + 32570868 32571007 LTR16C 481 - 55 195 199862 34 72 73 33 chain 28630 chr20 63025520 + 32591440 32591744 AluYa5 310 - 6 310 90609 304 chain 11201 chr20 63025520 + 32593625 32593857 L1MC1 2226 - 222 447 155417 11 2 0 13 3 0 66 7 6 16 11 5 33 22 27 48 chain 10802 chr20 63025520 + 32594472 32594702 Tigger3a 397 + 170 397 156979 82 35 0 12 41 73 60 chain 22173 chr20 63025520 + 32595062 32595344 AluSc 308 + 17 297 119477 114 1 0 124 8 7 35 chain 23464 chr20 63025520 + 32616265 32616540 AluY 311 + 37 311 113295 95 0 1 140 2 0 38 chain 3250 chr20 63025520 + 32648063 32648177 Tigger4a 237 - 96 232 220017 31 3 0 7 45 55 8 0 15 20 chain 24991 chr20 63025520 + 32702302 32702612 AluSp 311 - 0 311 104851 97 7 8 206 chain 22089 chr20 63025520 + 32708816 32709113 AluSq2 311 + 14 308 119844 76 1 0 184 12 10 24 chain 23416 chr20 63025520 + 32713298 32713577 AluY 311 + 9 289 113559 123 0 1 156 chain 23445 chr20 63025520 + 32715279 32715559 AluY 311 + 16 297 113402 112 1 2 167 chain 174552 chr20 63025520 + 32718040 32722545 HERVK-int 6823 + 3604 6521 21534 397 1 7 693 1 2 456 1920 449 109 9 8 23 1 0 100 1 0 31 5 4 123 1 0 51 3 0 5 1 0 8 5 3 73 4 2 6 1 0 24 17 11 11 1 0 20 192 117 8 2 0 13 1 0 14 5 4 8 2 0 30 40 29 10 10 4 8 1 0 8 4 2 29 1 0 4 1 0 13 chain 156878 chr20 63025520 + 32719618 32721485 SVA_D 2077 + 8 2074 23743 12 6 0 520 0 40 328 4 64 15 0 2 13 0 52 202 49 0 47 0 98 534 0 9 119 7 0 11 chain 3445 chr20 63025520 + 32720718 32720767 SVA_D 2077 + 1080 1129 78143 49 chain 11329 chr20 63025520 + 32724422 32724683 L1MA4A 3247 + 2559 2791 154965 15 6 0 87 41 39 15 9 0 7 1 0 30 8 1 23 4 0 15 chain 25566 chr20 63025520 + 32725828 32726125 AluY 311 + 4 301 101893 128 0 1 66 2 0 26 0 1 75 chain 24169 chr20 63025520 + 32731509 32731798 AluY 311 + 21 306 109377 102 8 4 179 chain 40999 chr20 63025520 + 32732546 32732987 LTR7Y 441 - 0 441 67904 441 chain 61953 chr20 63025520 + 32739865 32740756 LTR12 884 + 0 884 51919 25 1 0 6 10 0 24 0 107 214 2 0 105 107 2 282 0 4 115 chain 250149 chr20 63025520 + 32740806 32743851 HERV9-int 5642 + 5 4799 16244 592 9 7 10 5 0 98 0 4 79 1 0 22 2 3 287 3 0 1338 0 2 393 0 1795 55 0 1 63 43 0 45 chain 48163 chr20 63025520 + 32745339 32745959 LTR12_ 688 + 0 688 60349 25 13 12 47 1 67 418 0 4 69 1 0 46 chain 22160 chr20 63025520 + 32761242 32761511 AluY 311 + 20 292 119544 112 0 1 127 7 9 23 chain 25195 chr20 63025520 + 32777048 32777337 AluSp 311 - 12 301 103762 289 chain 69464 chr20 63025520 + 32792873 32793766 LTR12D 1347 - 7 943 48624 258 2 1 30 3 2 19 12 8 311 0 18 125 1 32 132 chain 146058 chr20 63025520 + 32810472 32812044 SVA_F 1814 + 10 1814 25158 691 0 40 139 0 2 10 1 0 6 0 191 725 chain 134070 chr20 63025520 + 32816398 32819135 SVA_F 1814 - 12 1479 27185 528 978 0 312 0 15 51 303 0 15 1 0 180 3 0 366 chain 26431 chr20 63025520 + 32817036 32817904 SVA_F 1814 - 601 997 69988 250 0 15 5 127 0 62 0 1 25 1 0 27 360 0 11 chain 8733 chr20 63025520 + 32817291 32817418 SVA_F 1814 - 680 807 71617 127 chain 9671 chr20 63025520 + 32817533 32817638 SVA_F 1814 - 746 851 81205 105 chain 4813 chr20 63025520 + 32817639 32817709 SVA_F 1814 - 916 986 71617 17 0 1 25 1 0 27 chain 9813 chr20 63025520 + 32817709 32817815 SVA_F 1814 - 746 852 89513 106 chain 2127 chr20 63025520 + 32817815 32817893 SVA_F 1814 - 627 705 127474 78 chain 2040 chr20 63025520 + 32818267 32818334 SVA_F 1814 - 1047 1117 69988 28 0 3 39 chain 4802 chr20 63025520 + 32818433 32818493 SVA_F 1814 - 540 600 136745 60 chain 709 chr20 63025520 + 32818493 32818519 SVA_F 1814 - 825 851 127474 26 chain 3681 chr20 63025520 + 32818519 32818565 SVA_F 1814 - 626 672 136745 46 chain 6074 chr20 63025520 + 32846068 32846200 MER58C 217 - 2 148 184626 54 27 30 16 10 21 25 chain 25418 chr20 63025520 + 32874363 32874665 AluSp 311 + 7 307 102599 52 1 0 115 1 0 133 chain 87978 chr20 63025520 + 32885975 32887003 LTR13 1007 + 0 1007 40383 425 26 5 577 chain 128347 chr20 63025520 + 32915079 32916539 L1PA6 6164 + 4686 6154 28485 280 0 1 345 0 4 97 0 3 738 chain 36469 chr20 63025520 + 32945569 32947397 MER41B 635 + 0 611 74278 102 291 0 15 7 10 26 8 23 275 1025 81 79 chain 3927 chr20 63025520 + 32948012 32948057 MER5A 189 + 66 111 208458 45 chain 24193 chr20 63025520 + 32948438 32948728 AluSg7 307 - 16 307 109259 164 0 1 126 chain 7290 chr20 63025520 + 32971974 32972056 HY3 101 - 7 89 175507 82 chain 24316 chr20 63025520 + 33006554 33006867 AluSp 311 - 3 310 108570 7 2 0 20 2 0 241 2 0 39 chain 25618 chr20 63025520 + 33020813 33021103 AluSq10 312 + 0 290 101632 290 chain 137828 chr20 63025520 + 33061969 33063501 SVA_D 2077 - 0 2066 26512 622 1 0 17 0 535 320 0 1 557 1 0 14 chain 46958 chr20 63025520 + 33099351 33100004 PABL_A 660 - 0 659 61248 69 13 15 149 0 1 4 1 0 171 16 4 45 0 12 135 1 5 49 chain 6701 chr20 63025520 + 33114316 33114395 HY3 101 - 1 80 179674 79 chain 2986 chr20 63025520 + 33127905 33127943 MER5A 189 + 35 71 225329 28 2 0 8 chain 3381 chr20 63025520 + 33150853 33150934 MADE2 80 + 0 80 217449 26 29 28 26 chain 22284 chr20 63025520 + 33151097 33151360 AluSp 311 + 8 287 118978 175 1 0 31 0 16 5 0 1 51 chain 9377 chr20 63025520 + 33176092 33176222 L1MA7 2200 - 552 681 163662 94 4 3 32 chain 25895 chr20 63025520 + 33193782 33194080 AluSc8 310 + 5 306 100464 127 0 3 171 chain 25858 chr20 63025520 + 33197556 33197895 THE1C 375 + 0 336 100612 120 4 0 64 1 2 150 chain 171166 chr20 63025520 + 33197895 33200333 L1PA8 5853 + 3730 5853 21920 1004 0 2 251 0 4 15 325 8 70 1 4 92 0 2 9 0 1 108 0 1 158 0 2 61 0 3 39 1 0 43 3 1 70 2 1 9 2 1 51 2 1 19 1 0 18 0 3 13 13 1 58 chain 12575 chr20 63025520 + 33203314 33203537 MER44B 551 + 1 246 149941 6 1 0 59 1 8 97 36 52 23 chain 52611 chr20 63025520 + 33204894 33205554 THE1A-int 1579 + 907 1568 57232 16 13 12 96 0 2 535 chain 23321 chr20 63025520 + 33220176 33220447 AluSg7 307 - 13 286 114084 169 0 2 102 chain 169746 chr20 63025520 + 33245755 33247870 SVA_D 2077 + 0 2077 22080 19 5 0 16 3 1 506 0 40 180 40 0 60 40 0 95 0 137 98 2 1 235 123 0 13 4 0 676 chain 10001 chr20 63025520 + 33247054 33247177 SVA_D 2077 + 1034 1159 75394 2 0 2 121 chain 23946 chr20 63025520 + 33259075 33259365 AluSp 311 - 20 311 110644 26 0 2 143 2 0 82 0 1 37 chain 13348 chr20 63025520 + 33273422 33273586 Tigger3a 397 + 142 306 146893 164 chain 2798 chr20 63025520 + 33284670 33284821 MLT1E1A 663 - 8 160 228763 22 103 104 26 chain 19166 chr20 63025520 + 33366562 33366787 AluY 311 + 83 308 129625 35 1 0 14 0 1 175 chain 21319 chr20 63025520 + 33376486 33376748 AluSp 311 + 20 287 122805 153 0 1 53 5 9 51 chain 7739 chr20 63025520 + 33414155 33414306 L1MA3 4352 - 25 178 172658 10 1 0 11 0 2 16 8 9 21 12 10 44 0 3 21 1 0 6 chain 9906 chr20 63025520 + 33418464 33418587 L1MB3 1562 + 766 889 161038 123 chain 6233 chr20 63025520 + 33456498 33456778 MLT1K 546 + 199 464 183293 23 68 52 48 96 101 19 4 0 22 chain 125773 chr20 63025520 + 33485722 33487170 LTR12C 1709 - 0 1709 29164 167 0 102 212 0 4 106 8 165 116 1 0 313 0 1 59 2 0 464 chain 6764 chr20 63025520 + 33629828 33629901 L1PA5 6144 - 12 85 179215 73 chain 523663 chr20 63025520 + 33659086 33665195 L1PA5 6144 - 0 6144 4795 265 2 1 124 11 10 29 1 0 439 1 5 576 1 0 344 0 8 249 3 1 199 0 6 210 0 3 232 4 0 194 0 4 749 0 9 106 0 4 71 2 0 132 0 2 1001 9 0 14 0 3 869 1 0 150 1 15 120 chain 9619 chr20 63025520 + 33689043 33689180 MER39B 650 + 197 322 162494 24 0 2 6 14 0 93 chain 3760 chr20 63025520 + 33697531 33697602 MLT2D 439 - 369 438 210959 23 17 15 31 chain 28194 chr20 63025520 + 33697653 33697985 L1PA6 6164 - 2 331 92330 13 3 0 316 chain 2865 chr20 63025520 + 33703882 33703912 L2a 937 + 359 389 227580 30 chain 24317 chr20 63025520 + 33715906 33716212 AluY 311 + 0 309 108559 72 4 7 230 chain 6759 chr20 63025520 + 33718172 33718276 MER44A 345 - 117 222 179258 83 8 9 13 chain 156459 chr20 63025520 + 33740704 33742858 SVA_F 1814 + 10 1802 23803 632 0 1 137 7 47 28 1 0 20 17 17 55 4 19 221 417 0 615 chain 23137 chr20 63025520 + 33741875 33742174 SVA_F 1814 + 962 1219 114955 39 1 0 10 1 0 116 41 0 87 0 1 4 chain 2173 chr20 63025520 + 33742042 33742083 SVA_F 1814 + 936 1000 148710 11 0 15 20 1 9 9 chain 2523 chr20 63025520 + 33742192 33742218 SVA_F 1814 + 1187 1213 152059 26 chain 300389 chr20 63025520 + 33748448 33752842 L1PA7 6471 + 0 6464 13400 192 16 17 198 8 0 18 360 37 158 2 1 199 302 5 37 6 7 31 31 39 79 1 2 421 2 0 149 0 1 88 1 2 88 1 5 184 0 2661 51 0 6 85 0 1 46 0 2 167 0 1 116 0 4 524 0 2 340 0 7 28 2 1 443 0 1 20 chain 3863 chr20 63025520 + 33754998 33755049 MIR 256 + 50 102 209395 14 0 1 37 chain 29128 chr20 63025520 + 33766310 33766617 AluYa5 310 - 3 310 88418 307 chain 7552 chr20 63025520 + 33771608 33771724 L1MB7 1623 + 1074 1191 173847 11 1 2 52 2 0 30 0 3 15 1 0 4 chain 111021 chr20 63025520 + 33771742 33773648 L1PB1 5432 + 3851 5404 33926 60 7 8 290 1 0 107 319 0 313 15 0 74 0 2 99 1 2 4 1 0 293 1 2 12 3 0 30 27 20 53 2 1 16 1 0 44 1 0 15 1 0 4 19 8 19 54 58 6 1 0 13 chain 22382 chr20 63025520 + 33774123 33774389 AluSp 311 + 34 302 118574 29 0 2 237 chain 62897 chr20 63025520 + 33776612 33777601 MER11B 1079 + 1 1074 51491 45 9 100 311 18 17 22 24 12 15 0 1 12 7 8 23 2 0 137 3 14 16 18 8 28 6 8 15 6 8 16 16 17 45 0 1 170 1 0 24 chain 43315 chr20 63025520 + 33780080 33780638 LTR19B 566 - 0 566 65024 52 3 0 13 23 28 181 0 1 178 2 6 15 0 1 91 chain 32587 chr20 63025520 + 33786822 33787271 Tigger1 2417 + 1016 1474 79878 18 12 15 122 10 13 271 0 3 16 chain 23934 chr20 63025520 + 33794010 33794300 AluSx3 311 + 15 305 110722 290 chain 16987 chr20 63025520 + 33810095 33810280 L1PA3long 6157 + 5972 6157 135630 185 chain 75267 chr20 63025520 + 33810288 33811133 L1PA4 6152 + 5291 6136 45886 527 1 0 122 1 2 194 chain 5206 chr20 63025520 + 33815515 33815680 MIR 256 - 23 192 192952 19 65 67 24 15 17 42 chain 75185 chr20 63025520 + 33849926 33850894 LTR5_Hs 974 - 0 974 45933 103 47 52 163 1 0 188 0 1 177 0 1 289 chain 26311 chr20 63025520 + 33868902 33869217 AluY 311 + 1 311 98778 81 7 1 49 0 1 178 chain 24104 chr20 63025520 + 33898175 33898471 AluSc 308 + 10 303 109724 116 3 0 177 chain 5099 chr20 63025520 + 33941225 33941310 Tigger3 1187 + 684 769 194100 14 1 0 44 7 8 19 chain 5900 chr20 63025520 + 33978241 33978383 L1MB2 1706 + 1532 1683 186186 21 35 51 7 1 0 14 2 1 32 5 0 25 chain 3423 chr20 63025520 + 33978617 33978680 L1MC4a 1092 + 682 746 216717 23 2 0 9 8 11 21 chain 45721 chr20 63025520 + 33991343 33992479 L1PA5 6144 + 5613 6143 62293 403 606 0 127 chain 25361 chr20 63025520 + 33991902 33992193 AluYc3 301 + 0 292 102883 113 1 2 177 chain 22159 chr20 63025520 + 34001894 34002157 AluSp 311 - 13 277 119552 167 6 7 90 chain 5192 chr20 63025520 + 34034791 34034859 L1PA5 6144 - 3 67 193124 6 4 0 58 chain 19541 chr20 63025520 + 34034869 34035091 L1PA5 6144 - 4 226 128542 222 chain 24718 chr20 63025520 + 34040252 34040543 AluSp 311 - 20 311 106339 291 chain 25656 chr20 63025520 + 34041993 34042291 AluSc 308 + 0 296 101464 76 2 0 220 chain 25179 chr20 63025520 + 34043733 34044009 AluSp 311 - 29 305 103853 276 chain 19855 chr20 63025520 + 34121780 34122038 AluSc 308 + 11 264 127636 37 14 9 207 chain 2703 chr20 63025520 + 34176951 34177004 MER75B 242 - 161 214 230203 16 13 13 24 chain 24294 chr20 63025520 + 34204553 34204851 AluSp 311 - 11 311 108679 45 5 8 119 1 0 128 chain 21210 chr20 63025520 + 34207902 34208183 AluSz 310 - 23 301 123179 10 0 2 10 1 0 10 3 0 30 1 0 216 chain 16346 chr20 63025520 + 34231074 34231291 7SK 245 + 13 239 137351 125 6 9 52 0 6 34 chain 78288 chr20 63025520 + 34274644 34275655 LTR13 1007 + 0 1007 44380 73 2 0 195 0 1 112 4 5 114 4 8 175 38 28 104 0 1 109 0 2 48 2 1 31 chain 12217 chr20 63025520 + 34415049 34415194 AluSp 311 - 38 183 151353 145 chain 24581 chr20 63025520 + 34422169 34422472 AluSp 311 - 7 311 107080 98 5 6 200 chain 6308 chr20 63025520 + 34431949 34432023 MER51E 476 - 98 172 182731 74 chain 8771 chr20 63025520 + 34433173 34433285 L1PA3long 6157 - 1 107 166811 7 6 0 99 chain 7173 chr20 63025520 + 34443428 34443581 L1MA3 4352 - 0 144 176254 21 12 7 10 1 0 26 1 0 6 1 0 24 15 12 15 0 2 21 chain 4037 chr20 63025520 + 34515449 34515530 MER3 215 + 114 210 206816 21 25 40 35 chain 50429 chr20 63025520 + 34524782 34526281 MER4D1 891 - 8 891 58690 56 0 1 4 11 9 5 0 2 36 9 5 44 57 57 77 335 17 141 2 1 56 0 1 21 1 2 83 0 28 9 1 0 8 0 4 18 338 10 58 14 16 33 0 1 6 1 0 37 1 0 37 chain 23773 chr20 63025520 + 34525116 34525404 AluSp 311 + 10 296 111638 14 6 4 268 chain 5261 chr20 63025520 + 34538343 34538418 Tigger3c 601 + 28 104 192404 22 2 3 51 chain 25692 chr20 63025520 + 34547251 34547619 THE1B 368 - 0 368 101323 167 26 24 60 7 9 108 chain 28644 chr20 63025520 + 34558858 34559168 AluYa5 310 - 0 310 90544 310 chain 3133 chr20 63025520 + 34576529 34576587 MER31A 484 - 41 96 222324 19 14 11 25 chain 151153 chr20 63025520 + 34588675 34590368 SVA_D 2077 - 1 2071 24455 98 0 4 235 0 10 260 0 225 181 25 167 841 4 0 49 chain 20721 chr20 63025520 + 34620137 34620477 THE1C 375 + 8 354 124888 22 1 0 17 0 6 15 17 18 23 5 6 65 0 1 4 22 21 144 1 0 4 chain 26375 chr20 63025520 + 34642273 34642624 THE1A 353 + 0 353 98513 47 0 1 48 1 0 11 16 18 228 chain 27757 chr20 63025520 + 34650293 34650745 MER66B 489 + 0 463 93845 150 13 14 23 0 1 99 3 2 44 29 33 20 26 25 15 0 7 30 chain 28321 chr20 63025520 + 34665741 34666122 LTR1 825 - 42 430 91861 51 0 1 68 0 3 39 1 2 85 2 0 20 1 0 79 8 0 12 0 13 15 chain 9189 chr20 63025520 + 34668665 34668809 LTR8 732 - 577 732 164608 80 18 19 17 0 9 10 0 1 19 chain 43917 chr20 63025520 + 34671186 34672059 MER41A 554 + 0 554 64315 92 0 1 32 0 3 190 0 1 132 324 0 103 chain 5453 chr20 63025520 + 34877872 34877937 Tigger3b 1229 + 628 693 190501 65 chain 28804 chr20 63025520 + 34955990 34956292 AluYa5 310 - 7 309 89877 302 chain 3303 chr20 63025520 + 35057369 35057406 MLT1D 503 - 189 226 218913 37 chain 2962 chr20 63025520 + 35072610 35072643 MER3 215 + 13 46 225841 33 chain 13574 chr20 63025520 + 35076223 35076422 L1PA8 5853 + 5608 5802 146076 35 0 8 28 1 0 9 2 0 12 8 0 44 2 1 15 1 0 42 chain 24218 chr20 63025520 + 35088019 35088299 AluSp 311 - 21 301 109110 280 chain 23208 chr20 63025520 + 35099610 35099901 AluSx4 309 + 1 285 114650 83 9 2 199 chain 23641 chr20 63025520 + 35136822 35137119 AluSp 311 - 3 300 112348 39 14 16 121 2 0 121 chain 26168 chr20 63025520 + 35160541 35160851 AluY 311 + 0 306 99330 14 4 0 292 chain 18326 chr20 63025520 + 35163591 35163821 AluY 311 + 82 300 131995 50 0 1 154 13 0 13 chain 4481 chr20 63025520 + 35175734 35175786 MIR 256 - 133 185 200998 52 chain 24594 chr20 63025520 + 35205921 35206216 AluSc 308 - 10 308 107023 107 0 3 188 chain 24816 chr20 63025520 + 35246270 35246564 AluY 311 + 2 297 105796 123 1 2 170 chain 29009 chr20 63025520 + 35264538 35264851 AluYb8 318 + 0 309 88944 126 4 0 183 chain 33027 chr20 63025520 + 35321889 35322379 MER1A 529 + 0 518 79173 84 47 59 256 1 8 48 5 14 49 chain 69722 chr20 63025520 + 35323371 35324484 MER11B 1079 + 0 1079 48510 200 3 5 182 1 0 70 22 21 18 24 12 15 0 1 14 17 9 47 0 1 104 0 7 12 1 0 16 86 61 25 5 6 53 0 1 78 1 0 91 2 1 14 1 4 11 chain 24381 chr20 63025520 + 35337155 35337454 AluSp 311 + 1 295 108189 32 5 0 242 0 2 12 2 0 6 chain 18022 chr20 63025520 + 35363609 35363844 Tigger4a 237 + 0 237 132798 104 3 4 62 0 1 66 chain 23651 chr20 63025520 + 35375179 35375482 AluSc 308 - 3 304 112301 284 3 1 16 chain 25739 chr20 63025520 + 35404845 35405143 AluSp 311 - 13 311 101121 298 chain 3711 chr20 63025520 + 35417112 35417159 MIR 256 + 61 108 211774 47 chain 7134 chr20 63025520 + 35458743 35458977 AluJo 314 + 197 292 176518 17 137 0 73 2 0 5 chain 8451 chr20 63025520 + 35543065 35543853 Tigger2a 444 + 204 380 168563 62 667 53 28 0 2 31 chain 11823 chr20 63025520 + 35560400 35560776 AluSq2 311 + 0 306 152931 17 3 139 31 206 0 119 chain 18541 chr20 63025520 + 35588444 35589126 MER51B 395 + 0 394 131388 34 13 32 34 23 17 94 373 60 28 0 12 83 chain 41013 chr20 63025520 + 35590700 35591212 MER9a3 513 + 0 513 67883 63 26 9 202 0 18 221 chain 8589 chr20 63025520 + 35595650 35595781 MER50 708 - 465 595 167796 68 0 1 21 19 17 23 chain 5650 chr20 63025520 + 35596081 35596181 MER50-int 1626 - 568 668 188570 14 1 0 51 16 17 18 chain 8589 chr20 63025520 + 35600760 35600891 MER50 708 + 113 243 167795 23 19 17 21 0 1 68 chain 168984 chr20 63025520 + 35604151 35606104 SVA_D 2077 - 0 2076 22168 136 0 20 514 15 14 4 0 1 47 0 1 288 1 0 6 35 10 6 1 0 29 0 85 270 0 40 570 3 7 28 chain 3298 chr20 63025520 + 35605162 35605197 SVA_D 2077 - 905 940 93719 35 chain 3098 chr20 63025520 + 35615758 35615792 LOR1a 498 + 0 34 222942 34 chain 35939 chr20 63025520 + 35621549 35622330 THE1B-int 1605 + 18 518 74973 86 0 1 312 307 0 13 1 26 62 chain 160588 chr20 63025520 + 35627863 35630171 SVA_D 2077 + 0 2074 23254 14 0 3 536 0 40 132 0 3 33 3 0 137 466 200 249 1 0 147 14 0 482 0 4 94 chain 29402 chr20 63025520 + 35628745 35629118 SVA_F 1814 + 855 1291 87057 25 0 1 59 7 22 13 0 1 25 1 0 4 1 0 133 0 49 87 1 0 17 chain 156604 chr20 63025520 + 35640258 35642006 SVA_D 2077 + 14 2077 23785 123 0 13 258 1 0 350 0 40 114 0 86 16 0 51 41 1 79 177 0 49 233 1 0 433 chain 3047 chr20 63025520 + 35663220 35663329 L1MC1 2226 + 2085 2184 224068 18 61 51 30 chain 21688 chr20 63025520 + 35667753 35668056 THE1B 368 + 0 307 121437 41 1 2 126 6 5 24 0 3 9 0 4 16 1 0 10 2 0 67 chain 10040 chr20 63025520 + 35671357 35672239 L1MB8 1703 + 1367 1588 160380 29 3 5 20 688 25 48 30 30 64 chain 6379 chr20 63025520 + 35685289 35685376 L1MB1 2102 - 121 206 182182 39 2 0 46 chain 145749 chr20 63025520 + 35697269 35698894 SVA_F 1814 + 0 1813 25218 911 0 191 695 3 0 16 chain 16330 chr20 63025520 + 35732564 35732787 Tigger4b 360 - 0 222 137405 46 14 13 163 chain 24077 chr20 63025520 + 35737791 35738093 AluSq10 312 + 0 306 109889 125 1 0 34 0 1 39 0 3 76 0 1 27 chain 161020 chr20 63025520 + 35753584 35755544 SVA_D 2077 + 6 2070 23194 32 11 0 10 1 0 5 0 2 841 16 158 6 0 1 196 0 1 4 19 48 78 37 0 13 41 0 36 5 6 41 0 17 353 0 1 215 chain 2523 chr20 63025520 + 35754803 35754840 SVA_D 2077 + 1085 1122 64217 37 chain 2796 chr20 63025520 + 35754853 35754894 SVA_D 2077 + 1135 1176 64217 41 chain 28872 chr20 63025520 + 35755544 35755854 AluYg6 310 + 0 310 89578 310 chain 13716 chr20 63025520 + 35757049 35757234 MER107 203 + 8 196 145555 154 0 9 10 7 1 14 chain 13621 chr20 63025520 + 35758149 35758314 L1PA8 5853 - 0 164 145898 93 1 0 71 chain 21887 chr20 63025520 + 35770847 35771128 AluSp 311 + 11 289 120674 30 4 0 31 1 2 215 chain 13365 chr20 63025520 + 35777381 35777594 L1MA2 4263 - 150 354 146833 8 1 0 35 0 1 11 7 0 88 14 12 49 chain 107229 chr20 63025520 + 35778649 35780053 SVA_B 1603 + 6 1393 34907 15 15 0 15 24 8 22 0 5 633 11 12 36 3 0 64 74 0 62 0 84 149 8 9 273 chain 4192 chr20 63025520 + 35779487 35779542 SVA_B 1603 + 739 797 199964 43 0 3 12 chain 24195 chr20 63025520 + 35803779 35804086 AluY 311 + 8 306 109243 115 8 1 176 2 0 6 chain 9189 chr20 63025520 + 35866322 35866429 FLAM_C 140 + 10 117 164613 107 chain 22684 chr20 63025520 + 35892683 35892968 AluY 311 + 4 289 117143 122 0 1 72 5 4 86 chain 3856 chr20 63025520 + 35896857 35896905 MIRc 230 + 85 133 209495 48 chain 42823 chr20 63025520 + 35921485 35922006 MER1A 529 - 2 525 65620 68 1 3 452 chain 10060 chr20 63025520 + 35953515 35953645 L1MA3 4352 - 107 233 160272 9 4 0 117 chain 2777 chr20 63025520 + 35968653 35968700 MIRb 242 + 95 143 229068 31 4 5 12 chain 3357 chr20 63025520 + 35982308 35982347 MIR 256 + 97 136 217912 39 chain 11811 chr20 63025520 + 35995819 35996437 L1MB8 1703 - 691 901 152978 79 439 33 33 2 0 47 1 0 5 0 1 12 chain 28767 chr20 63025520 + 35996947 35997252 AluYa8 305 - 0 304 90037 14 1 0 290 chain 32289 chr20 63025520 + 36085537 36086047 L1PA15 4387 - 60 560 80379 12 3 1 28 1 0 16 6 3 49 3 2 10 0 2 19 1 0 5 0 1 36 22 21 18 1 0 172 1 0 40 3 1 64 chain 2729 chr20 63025520 + 36087984 36088025 MLT1F1-int 864 - 564 606 229753 28 1 2 12 chain 35039 chr20 63025520 + 36163906 36164481 MER50 708 + 6 582 76135 37 15 6 5 0 1 51 1 0 25 31 41 181 0 35 14 36 0 34 13 15 52 1 0 79 chain 4043 chr20 63025520 + 36167336 36167389 L1MC4 1079 + 257 310 206754 53 chain 54550 chr20 63025520 + 36178538 36179155 SVA_B 1603 - 0 734 55996 6 2 0 570 0 119 39 chain 46378 chr20 63025520 + 36182970 36183642 MER50 708 + 6 686 61700 38 0 3 7 3 5 47 1 0 64 0 1 21 0 3 158 0 35 14 36 0 34 13 15 52 1 0 183 chain 6452 chr20 63025520 + 36188672 36188770 MER41B 635 + 511 630 181626 38 11 32 49 chain 17521 chr20 63025520 + 36189720 36190212 MER41C 542 + 207 542 134209 24 0 3 77 9 30 18 245 64 119 chain 40868 chr20 63025520 + 36190843 36191370 MER41A 554 - 0 539 68064 197 0 3 157 5 13 137 7 8 24 chain 4945 chr20 63025520 + 36245462 36245604 MER53 195 - 27 171 195749 27 21 20 12 40 43 42 chain 13142 chr20 63025520 + 36248543 36248859 L1MA5A 2387 - 12 276 147678 16 2 0 19 1 0 10 51 34 66 44 15 24 5 4 27 2 0 49 chain 20889 chr20 63025520 + 36284045 36284421 THE1D 372 - 0 372 124325 127 21 22 14 22 25 94 15 16 14 23 14 46 chain 41590 chr20 63025520 + 36291921 36292473 MER41A 554 - 0 554 67169 233 1 2 19 0 1 12 0 19 9 19 0 259 chain 26260 chr20 63025520 + 36293055 36293402 THE1B 368 - 0 368 98976 77 0 8 91 2 0 23 1 0 58 4 5 47 0 15 44 chain 18627 chr20 63025520 + 36303105 36303432 THE1C 375 + 0 335 131147 15 2 0 32 0 6 17 15 16 44 0 3 11 1 2 26 31 27 25 4 7 104 chain 90335 chr20 63025520 + 36346010 36347056 SVA_D 2077 - 0 1096 39524 659 0 49 174 49 0 109 1 0 29 0 51 25 chain 4132 chr20 63025520 + 36346843 36346892 SVA_D 2077 - 1009 1109 100124 1 1 52 47 chain 111229 chr20 63025520 + 36412500 36414328 L1M1 2793 - 164 2012 33879 172 19 17 129 5 0 8 1 31 61 18 23 51 6 5 25 2 1 125 6 10 299 5 6 11 27 0 86 6 8 104 11 8 7 0 1 78 4 8 79 14 6 16 5 6 68 1 0 26 0 4 6 0 14 31 27 33 5 0 2 38 0 1 13 5 4 23 23 24 52 14 11 54 1 0 6 2 0 32 6 5 15 chain 28539 chr20 63025520 + 36415745 36416045 AluYa5 310 - 10 310 91004 300 chain 4567 chr20 63025520 + 36581812 36581865 LTR51 675 + 274 328 200036 36 0 1 17 chain 28272 chr20 63025520 + 36590421 36590723 AluYb9 318 + 10 312 92035 302 chain 324602 chr20 63025520 + 36591614 36597263 L1PB1 5432 - 12 5403 12412 16 1 0 12 1 0 22 1 0 24 2 0 14 9 6 18 32 21 6 1 0 13 13 11 12 9 8 12 10 9 48 2 0 6 8 4 14 1 0 10 4 11 9 1 0 11 3 0 87 5 9 43 3 2 65 0 17 25 4 6 32 21 18 170 4 1 128 0 423 248 3 0 5 8 12 63 6 0 22 1 2 84 1 0 95 1 0 5 1 4 147 0 1 4 1 0 39 31 36 108 1 5 131 8 9 181 135 136 16 674 7 199 0 5 20 3 0 81 36 16 149 2 0 273 6 0 241 12 14 308 22 30 85 0 1 515 10 14 8 0 2 161 0 4 13 3 0 7 0 3 94 0 1 152 16 15 133 40 42 11 31 24 67 chain 6535 chr20 63025520 + 36599898 36600001 LTR19A 502 + 402 502 180966 28 12 9 63 chain 5726 chr20 63025520 + 36631234 36631304 MLT1A1 405 + 335 405 187881 70 chain 17102 chr20 63025520 + 36658093 36658439 MSTC 436 + 0 424 135307 59 0 6 12 20 83 25 0 5 18 62 65 13 0 2 16 12 11 109 chain 7728 chr20 63025520 + 36681052 36681145 HY3 101 - 5 98 172724 93 chain 4518 chr20 63025520 + 36735213 36735269 MER70C 520 - 111 167 200586 56 chain 91572 chr20 63025520 + 36735280 36736298 L1PA4 6152 + 5118 6140 39101 186 0 4 832 chain 3816 chr20 63025520 + 36778856 36778902 MER5A 189 + 30 76 210145 46 chain 5746 chr20 63025520 + 36807714 36807778 MSTA 426 + 32 96 187672 64 chain 26219 chr20 63025520 + 36807793 36808147 L1PA8 5853 + 5506 5853 99126 56 1 0 47 2 0 67 4 3 10 1 0 51 2 1 19 1 0 93 chain 6323 chr20 63025520 + 36852150 36852319 MER5A 189 - 21 189 182610 38 61 61 41 8 7 21 chain 3402 chr20 63025520 + 36871426 36871465 MamGypLTR3 363 + 189 228 217055 39 chain 24253 chr20 63025520 + 36878938 36879315 LTR9B 643 - 84 467 108925 32 0 10 17 8 1 25 54 58 210 1 0 30 chain 160060 chr20 63025520 + 36893016 36895247 L1MA2 4263 + 1879 4114 23330 8 0 1 82 1 0 158 39 19 69 13 12 416 4 3 42 13 8 43 7 6 41 0 48 73 1 2 263 0 4 181 0 1 224 18 13 33 3 0 168 12 9 141 1 0 9 11 9 82 21 14 43 1 0 10 chain 26348 chr20 63025520 + 36904166 36904529 Tigger3b 1229 - 23 437 98623 54 0 4 154 24 71 131 chain 110027 chr20 63025520 + 36909203 36910772 THE1D-int 1627 - 0 1627 34210 24 9 12 12 12 11 200 0 1 27 58 36 113 7 4 434 3 0 29 2 1 5 0 1 20 1 2 17 0 1 4 1 0 150 12 11 35 6 87 377 0 2 11 chain 4885 chr20 63025520 + 36914579 36914867 MLT1B 390 - 8 280 196427 25 209 192 17 0 1 37 chain 5313 chr20 63025520 + 36968063 36968126 MADE1 96 + 0 80 191891 46 0 17 17 chain 22120 chr20 63025520 + 36990998 36991281 AluSx1 309 + 14 292 119705 128 3 0 8 2 5 129 5 0 8 chain 155878 chr20 63025520 + 37006831 37008576 SVA_D 2077 + 55 2064 23873 495 0 40 97 0 40 151 0 83 32 1 0 43 0 2 53 0 2 210 0 98 231 1 0 294 0 1 137 chain 9151 chr20 63025520 + 37009230 37009477 LTR48 738 - 470 738 164805 71 1 0 43 115 137 17 chain 10395 chr20 63025520 + 37013874 37014058 THE1C 375 + 151 335 158720 34 3 4 23 31 30 93 chain 22099 chr20 63025520 + 37014653 37015046 MER57B1 401 + 13 396 119794 17 0 7 6 1 0 128 0 2 79 20 0 34 69 71 39 chain 21203 chr20 63025520 + 37024431 37024765 THE1C 375 - 15 349 123201 118 6 0 8 15 18 29 0 1 72 7 8 20 10 11 49 chain 7100 chr20 63025520 + 37028528 37028678 MLT1B 390 + 229 390 176752 34 49 58 29 0 2 38 chain 23650 chr20 63025520 + 37029999 37030363 THE1D 372 - 0 356 112313 149 4 0 7 0 1 22 1 0 6 3 0 11 6 10 34 0 4 55 26 17 40 chain 113694 chr20 63025520 + 37035549 37036997 SVA_B 1603 + 101 1603 33176 16 2 0 5 102 88 410 0 77 201 0 1 4 4 0 17 4 0 25 0 1 30 1 0 627 chain 25869 chr20 63025520 + 37046514 37046812 AluSg7 307 + 0 303 100574 128 0 5 170 chain 4439 chr20 63025520 + 37046889 37046967 Tigger1 2417 + 2224 2303 201468 19 13 14 46 chain 9341 chr20 63025520 + 37074913 37075107 MLT1A0 366 - 9 187 163847 22 12 9 51 2 3 14 5 4 14 12 4 28 4 0 3 1 0 26 chain 166125 chr20 63025520 + 37089309 37091248 SVA_D 2077 - 0 2077 22502 136 0 20 482 0 1 37 8 0 5 0 8 50 37 0 30 0 1 8 10 37 4 0 1 170 0 1 32 1 138 888 1 0 15 12 0 13 chain 3005 chr20 63025520 + 37090027 37090064 SVA_D 2077 - 866 993 125187 20 0 90 17 chain 7050 chr20 63025520 + 37096122 37096257 MLT1A 405 + 0 125 177109 15 1 3 4 1 0 8 12 0 47 6 7 41 chain 25237 chr20 63025520 + 37107254 37107558 AluSp 311 - 7 311 103554 304 chain 59317 chr20 63025520 + 37139972 37140631 SVA_B 1603 - 0 657 53214 6 2 0 415 0 1 205 1 0 30 chain 4869 chr20 63025520 + 37145199 37145281 MADE1 96 - 0 96 196598 47 15 29 20 chain 4193 chr20 63025520 + 37159542 37159634 Tigger2b_Pri 1066 - 917 1012 204655 23 10 14 32 13 12 14 chain 35730 chr20 63025520 + 37178537 37178947 L1PA3long 6157 + 5747 6157 75224 410 chain 5866 chr20 63025520 + 37192867 37193043 MER58A 224 + 45 223 186539 31 89 91 56 chain 26826 chr20 63025520 + 37221038 37221447 LTR7 482 - 0 482 96887 190 0 31 33 2 3 22 0 3 17 0 51 17 15 14 15 27 15 71 chain 282380 chr20 63025520 + 37222671 37227028 HERVH-int 3825 - 0 3825 14511 350 0 1 459 1 0 42 163 0 716 0 2 5 10 8 436 40 25 178 4 3 129 394 45 63 0 1 13 5 12 108 15 0 145 27 28 277 1 0 62 63 0 20 1 0 41 1 38 14 29 0 12 0 57 27 0 1 22 8 10 142 1 0 333 chain 30013 chr20 63025520 + 37227043 37227442 LTR7 482 - 13 482 84762 187 5 36 21 0 1 109 9 47 68 chain 5753 chr20 63025520 + 37237923 37238080 MER5A 189 - 32 189 187616 64 63 0 9 1 64 20 chain 3448 chr20 63025520 + 37249607 37249692 MER45A 178 - 69 155 216244 27 34 35 24 chain 20313 chr20 63025520 + 37259983 37260298 THE1B 368 - 4 368 126197 32 0 25 64 35 45 26 1 0 108 5 20 44 chain 4560 chr20 63025520 + 37281763 37281926 HAL1-2a_MD 234 - 98 210 200111 19 25 1 23 65 38 31 chain 3304 chr20 63025520 + 37281969 37282022 HAL1-2a_MD 234 - 9 141 218910 5 3 0 22 0 82 23 chain 22803 chr20 63025520 + 37291413 37291695 AluSp 311 - 26 310 116557 110 1 2 144 0 1 27 chain 26450 chr20 63025520 + 37295699 37295996 AluYk4 311 + 0 297 98242 297 chain 25764 chr20 63025520 + 37315841 37316141 L1PA8A 6298 - 6 306 101028 300 chain 26021 chr20 63025520 + 37327025 37327557 LTR17 781 - 0 781 99939 12 2 0 37 1 23 226 184 414 10 1 0 59 chain 12862 chr20 63025520 + 37327303 37327466 LTR17 781 + 292 453 147558 35 1 0 3 1 0 123 chain 21662 chr20 63025520 + 37365230 37365504 AluY 311 + 10 293 121534 122 0 1 90 0 11 49 3 0 10 chain 24912 chr20 63025520 + 37372691 37372995 AluSp 311 + 8 310 105263 297 2 0 5 chain 16306 chr20 63025520 + 37390170 37390409 7SK 245 + 0 241 137463 77 39 41 123 chain 4735 chr20 63025520 + 37417899 37417961 MLT1B 390 + 37 107 198107 8 0 8 54 chain 7091 chr20 63025520 + 37429954 37430068 L1MB8 1703 - 126 238 176823 62 12 10 40 chain 28943 chr20 63025520 + 37430174 37430477 AluYa5 310 - 7 310 89260 303 chain 2858 chr20 63025520 + 37450845 37450882 L1MEb 951 - 601 638 227687 37 chain 9766 chr20 63025520 + 37476652 37476810 MER58A 224 + 46 207 161766 96 30 33 32 chain 6595 chr20 63025520 + 37525306 37525475 L1MB3 1562 - 40 179 180494 31 25 24 29 47 18 37 chain 3977 chr20 63025520 + 37527501 37527546 MADE1 96 - 51 96 207726 45 chain 5414 chr20 63025520 + 37540956 37541019 MER5A 189 + 6 69 190849 63 chain 28911 chr20 63025520 + 37583819 37584128 AluYk12 309 + 1 308 89415 122 2 0 185 chain 8524 chr20 63025520 + 37645133 37645239 L1MB8 1703 - 280 386 168165 106 chain 23636 chr20 63025520 + 37690017 37690296 AluY 311 + 21 301 112377 97 1 0 13 0 2 168 chain 10047 chr20 63025520 + 37691006 37691144 L1PA8 5853 - 0 136 160336 90 4 3 19 2 1 23 chain 5267 chr20 63025520 + 37692560 37692665 MLT1C 463 + 8 122 192343 13 33 42 59 chain 3307 chr20 63025520 + 37705538 37705574 MER30 238 + 193 229 218828 36 chain 4355 chr20 63025520 + 37716475 37716527 MER2 342 - 149 201 202493 52 chain 80051 chr20 63025520 + 37772042 37772934 L1PA2 6032 + 5130 6030 43566 742 4 11 133 1 2 12 chain 142409 chr20 63025520 + 37810841 37812409 L1PA4 6152 - 10 1579 25741 1512 0 1 56 chain 11270 chr20 63025520 + 37891272 37891429 L1MA5 2750 + 2466 2621 155158 90 7 6 50 1 0 9 chain 28053 chr20 63025520 + 37914868 37915224 THE1A 353 + 0 353 92812 109 2 1 56 0 1 35 2 0 77 1 0 74 chain 131498 chr20 63025520 + 37915224 37916781 THE1A-int 1579 + 0 1574 27751 440 0 2 629 0 12 293 2 0 66 0 5 127 chain 3808 chr20 63025520 + 37946979 37947029 MIR 256 + 177 227 210249 50 chain 19389 chr20 63025520 + 37969093 37969345 L1PA16 3655 + 3311 3559 128975 189 0 1 39 6 1 18 chain 19009 chr20 63025520 + 37973443 37973721 Tigger3b 1229 + 344 646 130092 142 2 1 34 5 11 35 1 0 10 2 22 47 chain 284435 chr20 63025520 + 37996883 38000000 L1HS 6032 + 778 3895 14391 120 1 0 44 1 0 4 0 1 28 0 1 2919 chain 195298 chr20 63025520 + 38000000 38002127 L1PA2 6032 + 3895 6028 19557 1287 0 4 40 0 2 215 0 1 568 1 0 16 chain 16853 chr20 63025520 + 38029752 38030115 MSTA 426 + 0 424 135963 66 47 71 43 67 84 32 1 21 107 chain 19848 chr20 63025520 + 38042268 38042502 L1PA5 6144 + 5907 6139 127659 171 3 1 60 chain 3271 chr20 63025520 + 38054162 38054319 MER5A 189 + 0 159 219581 23 31 32 16 64 65 23 chain 8847 chr20 63025520 + 38062016 38062111 L1PA4 6152 - 327 422 166390 95 chain 111909 chr20 63025520 + 38098553 38099779 L1PA3long 6157 - 0 1222 33690 412 4 0 810 chain 68490 chr20 63025520 + 38099786 38100534 L1PA3long 6157 + 4229 4977 49045 748 chain 5081 chr20 63025520 + 38111687 38112346 LTR19-int 1103 + 96 620 81635 28 17 0 7 1 0 17 1 0 54 79 19 34 27 6 40 29 26 37 8 0 88 6 1 23 23 25 5 3 0 70 4 0 19 14 0 25 chain 245555 chr20 63025520 + 38112367 38115080 L1PA4 6152 - 1 2716 16479 849 0 3 1618 1 0 245 chain 28161 chr20 63025520 + 38115081 38115398 L1P1 4361 + 2749 3066 92424 317 chain 2745 chr20 63025520 + 38115417 38115773 LTR19-int 1103 + 630 851 81635 15 1 0 13 150 53 9 1 0 49 47 18 7 1 0 10 4 1 17 2 0 4 1 0 25 chain 37381 chr20 63025520 + 38117200 38117694 LTR19A 502 + 0 502 72989 78 1 8 146 6 5 74 1 2 147 6 7 35 chain 48992 chr20 63025520 + 38136277 38136829 L1PA4 6152 - 6 557 59756 547 1 0 4 chain 15109 chr20 63025520 + 38167709 38167881 L1PA7 6471 + 6294 6466 141007 172 chain 22647 chr20 63025520 + 38174880 38175151 AluY 311 + 4 276 117340 128 0 1 143 chain 25416 chr20 63025520 + 38199792 38200190 LTR3A 482 - 62 456 102613 43 0 7 26 3 4 32 2 3 39 4 0 8 39 30 202 chain 99070 chr20 63025520 + 38212446 38213546 L1PA3long 6157 - 0 1102 36985 772 1 2 82 0 1 245 chain 116115 chr20 63025520 + 38213546 38214829 L1PA3long 6157 + 3762 5045 32411 1283 chain 178069 chr20 63025520 + 38237463 38239677 L1PA8A 6298 + 4071 6291 21157 59 0 1 6 0 1 143 2 0 5 2 4 133 0 1 24 0 1 232 7 5 9 0 1 94 0 1 274 0 1 71 0 2 334 12 11 95 0 1 54 1 0 545 7 0 6 5 12 94 chain 3388 chr20 63025520 + 38322690 38322728 MER103C 291 - 137 175 217344 38 chain 7867 chr20 63025520 + 38341074 38341223 L1MA1 4479 - 289 456 171885 13 5 15 11 1 0 9 1 0 9 0 13 13 8 6 23 1 0 55 chain 44200 chr20 63025520 + 38349653 38350174 MER9a2 513 + 0 513 63945 129 4 2 315 6 0 67 chain 308978 chr20 63025520 + 38351561 38355271 HERVK9-int 4720 + 54 4720 13047 4 1 0 66 1 0 8 1 0 28 1 0 206 32 32 376 3 2 206 0 1 19 0 24 145 3 5 84 1 0 151 0 1 4 1 0 80 0 924 1817 3 4 206 0 1 96 0 9 167 chain 43834 chr20 63025520 + 38355271 38355779 MER9a2 513 + 0 506 64404 129 4 2 375 chain 177911 chr20 63025520 + 38368953 38370868 L1PA2 6032 - 5 1920 21171 1915 chain 13708 chr20 63025520 + 38370868 38371019 L1PA2 6032 + 3972 4123 145274 151 chain 3671 chr20 63025520 + 38379548 38379588 MER33 330 + 30 70 212360 40 chain 27330 chr20 63025520 + 38393695 38394048 THE1A 353 + 0 353 95172 109 2 1 131 1 2 110 chain 121737 chr20 63025520 + 38409669 38411006 L1PA3long 6157 - 5 1338 30464 267 5 0 46 0 1 1019 chain 105953 chr20 63025520 + 38430137 38431299 L1HS 6032 - 4380 5551 35267 466 0 9 696 chain 343673 chr20 63025520 + 38431299 38435039 L1PA2 6032 + 2294 6032 11792 1702 2 1 318 1 0 1717 chain 39891 chr20 63025520 + 38455768 38456622 MER41C 542 + 0 542 69470 49 0 1 42 0 4 129 319 0 62 0 1 20 12 13 221 chain 4696 chr20 63025520 + 38467468 38467550 MER20 218 - 138 218 198570 47 16 14 19 chain 19209 chr20 63025520 + 38503767 38503978 L1PA3long 6157 - 7 219 129509 122 0 1 89 chain 11151 chr20 63025520 + 38503978 38504104 L1PA3long 6157 + 5822 5946 155627 82 2 0 42 chain 93693 chr20 63025520 + 38547301 38548343 L1PA4 6152 - 3060 4117 38361 506 0 13 361 0 1 60 0 1 115 chain 272318 chr20 63025520 + 38548343 38551450 L1PA4 6152 + 3085 6152 15060 114 1 0 57 0 3 18 0 1 476 1 0 868 0 1 563 0 4 848 1 0 3 46 0 111 chain 28411 chr20 63025520 + 38570725 38571020 AluYg6 310 - 15 310 91534 295 chain 6290 chr20 63025520 + 38589197 38589350 MIR 256 - 47 210 182880 30 63 73 60 chain 386041 chr20 63025520 + 38597804 38602854 L1PA8 5853 - 0 5088 10573 93 1 0 13 1 0 6 2 1 49 15 13 70 2 0 43 5 4 450 11 12 90 2 0 3 0 1 21 0 12 394 2 13 687 8 16 143 0 1 318 8 6 94 0 1 82 1 0 85 1 2 605 0 1 458 0 1 39 4 0 514 7 9 188 0 1 205 51 65 279 chain 26424 chr20 63025520 + 38606117 38606424 L1HS 6032 + 6 313 97377 68 0 1 181 1 0 57 chain 165587 chr20 63025520 + 38606424 38608219 L1PA2 6032 + 4228 6027 22572 557 0 4 1238 chain 36503 chr20 63025520 + 38625425 38625908 L1PA8A 6298 - 1595 2087 74235 312 1 3 13 14 22 79 0 1 48 2 0 14 chain 110033 chr20 63025520 + 38625917 38627505 L1PA8A 6298 + 4705 6139 34207 638 0 5 141 3 1 26 1 0 4 0 1 34 47 50 107 6 4 203 167 9 211 chain 6517 chr20 63025520 + 38627219 38627294 L1PA8A 6298 + 5842 5917 181109 75 chain 17685 chr20 63025520 + 38630888 38631178 L1PA8 5853 + 5551 5834 133735 13 1 0 44 2 0 71 27 25 38 1 0 18 1 0 32 0 6 7 6 0 29 chain 21170 chr20 63025520 + 38673515 38673802 L1PA7 6471 - 6 290 123309 99 11 7 59 7 8 111 chain 6307 chr20 63025520 + 38683103 38683183 MADE1 96 + 0 96 182735 37 1 17 42 chain 20345 chr20 63025520 + 38687193 38687567 THE1D 372 - 12 370 126082 19 11 1 7 0 1 108 13 14 13 4 0 6 43 47 83 8 0 59 chain 8657 chr20 63025520 + 38688899 38689033 THE1D-int 1627 + 393 522 167443 25 11 13 47 7 0 44 chain 18194 chr20 63025520 + 38721305 38721569 MSTA-int 1630 - 1373 1630 132345 47 24 17 193 chain 29718 chr20 63025520 + 38721750 38722184 LTR7Y 441 + 0 441 85771 103 9 0 57 68 84 197 chain 279597 chr20 63025520 + 38722184 38726009 HERVH-int 3825 + 0 3825 14657 212 0 11 309 5 0 38 1 0 10 1 0 24 2 15 12 3 41 26 3 2 49 6 7 7 0 2 13 0 3 69 320 0 195 0 2 394 0 1 241 13 33 299 0 10 423 0 1 52 0 12 157 6 7 174 1 0 5 1 2 146 1 2 64 9 11 39 8 218 13 6 0 7 3 9 171 8 3 51 3 8 225 chain 29727 chr20 63025520 + 38727216 38727650 LTR7Y 441 + 0 441 85731 103 9 0 57 68 84 197 chain 14584 chr20 63025520 + 38776564 38776862 Tigger1 2417 - 2087 2417 142649 29 29 40 142 0 1 10 62 82 26 chain 24473 chr20 63025520 + 38809127 38809442 AluSp 311 - 8 311 107685 9 9 0 143 3 0 151 chain 2688 chr20 63025520 + 38809706 38809739 L1PA8 5853 - 270 302 230360 21 1 0 11 chain 4394 chr20 63025520 + 38840272 38840559 MER63B 433 - 13 295 202021 26 203 196 34 5 7 19 chain 28874 chr20 63025520 + 38876841 38877151 AluYf4 310 - 1 310 89569 183 1 0 126 chain 24104 chr20 63025520 + 38881487 38881840 THE1C 375 + 1 355 109728 12 2 0 14 1 0 20 0 6 17 15 16 93 7 4 172 chain 39432 chr20 63025520 + 38897693 38898143 LTR7 482 + 0 482 70115 225 0 1 21 0 31 204 chain 288875 chr20 63025520 + 38898145 38901689 HERVH-int 3825 + 0 3825 14094 52 0 3 477 69 0 38 1 0 12 1 0 22 1 52 40 5 4 54 8 11 13 0 3 660 0 1 217 3 4 18 10 35 299 0 10 153 0 3 889 9 11 39 8 218 236 0 29 30 1 13 179 chain 39991 chr20 63025520 + 38902951 38903401 LTR7 482 + 0 482 69330 225 0 1 4 0 31 221 chain 35292 chr20 63025520 + 38921111 38921571 L1PA7 6471 + 6008 6467 75804 125 1 2 37 4 5 4 1 0 278 2 0 8 chain 7446 chr20 63025520 + 38930412 38930492 L1PA7 6471 - 13 93 174464 80 chain 28102 chr20 63025520 + 39010315 39010621 AluYa5 310 - 1 310 92643 119 0 3 187 chain 29419 chr20 63025520 + 39029455 39029914 L1PA16 3655 - 94 550 86994 158 10 0 7 0 10 82 16 14 58 29 28 99 chain 6363 chr20 63025520 + 39080234 39080353 L1PA8A 6298 - 72 169 182294 44 7 0 27 4 6 12 17 0 8 chain 3602 chr20 63025520 + 39118003 39118042 MLT2F 649 - 547 586 213617 39 chain 32979 chr20 63025520 + 39130557 39131005 L1PA8 5853 + 5414 5853 79249 101 3 1 48 1 0 44 2 0 71 1 0 9 1 0 51 3 2 19 3 2 91 chain 122272 chr20 63025520 + 39144718 39146101 L1PA6 6164 - 2 1386 30290 857 0 1 526 chain 19164 chr20 63025520 + 39175938 39176151 L1PA3long 6157 + 5944 6157 129633 213 chain 227531 chr20 63025520 + 39182082 39185239 L1PA10 4194 + 175 3333 17449 12 2 0 12 3 0 7 2 0 13 5 1 12 2 0 9 1 0 9 1 0 21 2 0 15 1 0 8 69 41 21 42 30 8 1 0 9 1 0 78 46 45 448 1 0 4 0 1 146 0 3 53 0 1 5 2 1 102 0 4 147 0 19 152 1 0 542 0 7 59 0 1 163 1 0 10 5 9 122 1 10 73 7 4 64 0 1 228 0 1 386 0 18 23 chain 8242 chr20 63025520 + 39194961 39195063 Tigger4a 237 - 130 232 169726 102 chain 15528 chr20 63025520 + 39198632 39198877 L1PA16 3655 + 3403 3619 139806 38 3 0 136 3 0 10 7 0 3 11 0 13 5 0 16 chain 54828 chr20 63025520 + 39237760 39238393 L1PA3long 6157 + 5541 6157 55816 390 0 1 60 19 0 22 0 1 142 chain 31462 chr20 63025520 + 39238706 39239070 L1PA8A 6298 + 5927 6291 81715 364 chain 548029 chr20 63025520 + 39247963 39253988 L1PA3long 6157 + 0 6152 1705 152 0 1 503 11 0 125 0 128 253 0 3 3242 0 2 901 0 4 838 chain 3598 chr20 63025520 + 39293723 39293762 MIR 256 + 72 111 213672 39 chain 10269 chr20 63025520 + 39360173 39360293 L1PA4 6152 - 9 129 159289 120 chain 13526 chr20 63025520 + 39360293 39360447 L1PA4 6152 + 5873 6028 146258 128 0 1 26 chain 25797 chr20 63025520 + 39408570 39408875 AluSp 311 - 5 310 100886 305 chain 8532 chr20 63025520 + 39413759 39413901 L1MA2 4263 - 150 284 168123 52 21 14 19 2 1 48 chain 22520 chr20 63025520 + 39485663 39486048 THE1D 372 + 0 372 117935 54 8 9 12 17 0 3 1 0 88 31 32 85 0 2 37 11 12 38 chain 4639 chr20 63025520 + 39490752 39490810 LTR16C 481 + 398 457 199204 28 0 1 30 chain 31058 chr20 63025520 + 39506924 39507286 L1PA5 6144 + 5782 6144 82420 362 chain 15565 chr20 63025520 + 39507358 39507685 L1PB1 5432 + 5114 5418 139685 24 8 6 12 2 0 3 2 0 9 2 0 52 3 2 14 1 0 41 1 7 12 1 0 4 2 0 5 16 8 13 12 9 11 2 0 24 1 0 22 1 0 12 1 0 14 chain 20756 chr20 63025520 + 39532421 39532735 L1MC2 1988 + 1587 1906 124771 84 4 6 15 1 5 26 7 13 111 6 2 52 3 0 5 chain 131601 chr20 63025520 + 39538106 39539675 LTR12C 1709 - 0 1709 27715 417 20 1 63 0 4 107 2 0 6 1 0 115 0 159 729 1 0 108 chain 78341 chr20 63025520 + 39539798 39541028 LTR12E 1234 + 149 1234 44356 83 6 6 518 50 0 78 15 26 167 0 1 43 101 0 38 54 48 77 chain 3888 chr20 63025520 + 39540814 39540859 LTR12E 1234 + 1025 1070 207785 45 chain 2685 chr20 63025520 + 39543581 39543702 MER53 195 + 34 156 230383 24 56 56 15 11 12 15 chain 36676 chr20 63025520 + 39545829 39546220 L1PA3long 6157 + 5766 6157 73993 391 chain 4144 chr20 63025520 + 39552264 39552315 L1MB7 1623 + 1379 1429 205324 44 1 0 6 chain 4914 chr20 63025520 + 39596417 39596521 MLT1D 503 - 44 155 196126 6 0 1 20 6 11 12 18 19 42 chain 39167 chr20 63025520 + 39597829 39598273 LTR12C 1709 - 0 443 70515 84 1 0 359 chain 273614 chr20 63025520 + 39601857 39606311 L1MA3 4352 - 359 4315 14991 88 0 1 71 0 8 422 0 1 54 0 1 46 167 0 12 0 1 9 0 1 31 2 0 59 4 1 601 2 1 68 5 0 201 34 32 210 0 1 13 2 1 98 0 1 176 30 5 128 1 0 78 357 40 5 1 0 160 0 2 14 11 7 35 0 1 7 0 3 5 12 14 14 41 39 63 3 0 5 2 5 37 9 8 28 1 0 114 0 1 76 0 1 18 2 0 3 2 0 96 2 0 81 1 0 272 1 0 5 5 6 45 5 17 41 1 0 48 9 12 41 0 9 20 0 3 9 9 0 8 1 0 74 1 2 42 chain 6653 chr20 63025520 + 39602565 39602651 L1MA3 4352 - 2304 2391 180061 15 1 2 70 chain 12639 chr20 63025520 + 39617627 39617824 MER2 342 - 5 203 149688 35 27 28 135 chain 4249 chr20 63025520 + 39625229 39625278 L1MC5 759 + 225 274 203881 49 chain 29410 chr20 63025520 + 39637479 39637789 AluYa5 310 - 0 310 87019 310 chain 11584 chr20 63025520 + 39652848 39653017 U2 167 + 0 164 153949 131 2 0 6 2 0 5 3 1 5 0 1 15 chain 24176 chr20 63025520 + 39668278 39668562 AluY 311 + 12 298 109337 120 1 2 32 0 1 131 chain 5502 chr20 63025520 + 39717517 39717622 L1MB3 1562 - 10 123 190024 21 8 7 28 0 1 6 1 8 13 3 4 25 chain 21899 chr20 63025520 + 39742235 39742539 AluY 311 + 0 302 120624 71 1 7 55 18 7 117 0 1 17 0 2 25 chain 3503 chr20 63025520 + 39747697 39747745 Charlie4a 502 - 114 159 215323 39 3 0 6 chain 101010 chr20 63025520 + 39756728 39757831 L1PA3long 6157 - 0 1104 36511 1069 0 1 34 chain 54708 chr20 63025520 + 39757831 39758416 L1PA3long 6157 + 4449 5034 55713 585 chain 428502 chr20 63025520 + 39834457 39839487 L1PA6 6164 + 636 6160 9343 303 0 25 459 8 13 197 0 1 55 1 0 139 1 0 214 1 0 134 0 459 554 0 1 41 0 3 310 15 16 565 0 1 371 0 2 208 1 0 5 0 1 37 5 0 563 1 0 701 1 8 132 2 0 6 chain 10959 chr20 63025520 + 39859510 39859808 L1MC1 2226 - 28 295 156361 15 1 0 30 0 2 16 1 0 6 9 0 8 91 74 13 1 2 40 2 0 12 4 0 9 1 0 5 0 1 34 chain 220800 chr20 63025520 + 39863920 39866405 L1PA4 6152 + 3647 6152 17827 395 0 1 645 0 1 461 1 6 148 0 4 778 0 4 51 0 5 6 chain 22162 chr20 63025520 + 39870226 39870519 L1MA3 4352 - 1453 1746 119533 69 0 1 87 7 6 130 chain 3480 chr20 63025520 + 39879661 39879699 L1MDa 1598 + 1072 1110 215654 38 chain 4291 chr20 63025520 + 39885615 39885665 L1PB4 2604 - 52 102 203341 50 chain 22025 chr20 63025520 + 39892925 39893218 AluSp 311 + 26 301 120118 38 0 2 66 20 0 169 chain 24033 chr20 63025520 + 39924225 39924505 AluY 311 + 1 297 110147 42 1 0 11 0 17 226 chain 29026 chr20 63025520 + 39940707 39941150 LTR12F 595 + 9 563 88879 93 1 2 42 5 93 23 42 0 24 0 64 95 0 1 4 1 0 113 chain 3195 chr20 63025520 + 39972775 39972813 MER5A1 166 - 94 134 221027 5 0 2 33 chain 2773 chr20 63025520 + 39980264 39980301 MER3 215 - 109 144 229133 10 2 0 25 chain 4536 chr20 63025520 + 39998289 39998354 U3 216 - 147 216 200388 10 1 5 54 chain 24399 chr20 63025520 + 40010166 40010443 AluSp 311 + 8 288 108078 83 0 3 194 chain 6546 chr20 63025520 + 40012258 40012407 THE1B 368 + 153 306 180878 24 59 63 66 chain 24316 chr20 63025520 + 40028501 40028785 AluSp 311 + 11 295 108568 284 chain 3071 chr20 63025520 + 40028844 40028878 MIR 256 - 106 140 223534 34 chain 10338 chr20 63025520 + 40064312 40064473 L1MD1 2063 + 894 1061 158950 64 14 20 83 chain 4331 chr20 63025520 + 40077299 40077356 MSTD 398 + 319 398 202814 8 0 22 49 chain 113635 chr20 63025520 + 40088440 40089976 THE1A-int 1579 + 0 1574 33195 116 1 4 49 2 1 5 0 1 96 25 26 285 6 8 129 9 11 140 9 12 179 0 1 76 7 5 49 1 11 104 0 7 177 0 1 37 0 10 34 chain 24540 chr20 63025520 + 40089981 40090322 THE1A 353 + 0 341 107311 65 1 3 12 6 5 24 2 1 231 chain 10624 chr20 63025520 + 40119626 40119830 Tigger3 1187 - 287 490 157716 44 30 31 21 8 7 47 2 1 52 chain 107900 chr20 63025520 + 40148217 40149471 L1PA4 6152 + 4893 6152 34756 89 0 1 194 0 1 89 13 12 10 5 8 4 0 1 396 0 1 448 1 0 5 chain 5890 chr20 63025520 + 40166201 40166293 L1MB7 1623 + 947 1038 186277 46 7 6 39 chain 107947 chr20 63025520 + 40177105 40178292 L1PA4 6152 + 4962 6151 34735 309 0 1 29 0 1 849 chain 168135 chr20 63025520 + 40183047 40184934 SVA_D 2077 - 17 2070 22270 321 0 10 322 15 14 4 0 1 336 0 136 94 21 0 176 0 40 551 4 0 24 1 6 18 chain 3744 chr20 63025520 + 40203622 40203670 MER51A 677 + 199 251 211269 41 0 4 7 chain 56974 chr20 63025520 + 40214502 40215239 LTR17 781 + 0 757 54547 161 1 0 18 1 0 128 1 0 20 1 0 62 2 5 9 1 0 292 2 24 38 chain 218350 chr20 63025520 + 40217539 40219998 L1PA5 6144 + 3664 6132 17981 935 0 4 170 0 1 425 0 1 97 0 4 510 2 1 320 chain 12199 chr20 63025520 + 40228472 40228697 LTR10B1 532 + 249 480 151430 116 39 44 11 11 12 48 chain 47873 chr20 63025520 + 40258311 40258945 L1PA16 3655 - 724 1352 60574 9 1 0 28 2 1 219 1 0 39 2 0 62 10 9 261 chain 8671 chr20 63025520 + 40273726 40273926 THE1B 368 + 121 327 167355 48 63 68 5 1 0 44 0 2 18 1 0 4 1 2 15 chain 230375 chr20 63025520 + 40309587 40312141 L1PA5 6144 - 2 2557 17287 801 0 1 718 2 0 273 0 2 760 chain 6505 chr20 63025520 + 40353124 40353201 MLT1B 390 - 2 79 181199 77 chain 10709 chr20 63025520 + 40356152 40356635 LTR12 884 - 266 808 157376 12 1 0 44 306 362 86 15 19 19 chain 1369 chr20 63025520 + 40356635 40356670 LTR12 884 - 676 711 185728 35 chain 7999 chr20 63025520 + 40357095 40357195 MSTD-int 1705 + 1591 1690 171074 47 1 0 52 chain 50875 chr20 63025520 + 40359739 40360344 L1PA6 6164 - 2 607 58383 328 0 1 213 1 0 63 chain 13423 chr20 63025520 + 40382891 40383080 L1PB2 3958 - 135 320 146608 47 2 1 22 2 0 72 1 0 43 chain 60322 chr20 63025520 + 40385820 40386837 L1PA11 4918 - 289 1316 52669 18 139 100 24 1 0 12 2 0 70 2 0 8 5 4 36 11 12 14 1 0 62 0 1 12 14 35 88 1 15 7 14 0 74 0 1 36 0 1 32 0 27 21 0 1 144 1 4 168 chain 224408 chr20 63025520 + 40389923 40392654 L1PA8 5853 - 0 2737 17630 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 17 5 2 29 1 0 466 1 0 7 5 0 33 0 1 44 2 0 560 0 5 381 0 4 171 1 0 64 0 4 157 0 4 442 1 8 93 chain 139295 chr20 63025520 + 40393855 40395473 L1PA5 6144 + 4515 6141 26249 369 0 1 17 0 4 387 4 8 169 0 2 656 3 0 13 chain 7136 chr20 63025520 + 40397747 40397823 AluYb8 318 - 11 87 176504 76 chain 7066 chr20 63025520 + 40401981 40402123 MER58A 224 + 42 185 176974 44 41 42 57 chain 8847 chr20 63025520 + 40408477 40408589 L1PA8 5853 - 261 372 166391 28 1 0 83 chain 17976 chr20 63025520 + 40408595 40408844 L1PA8 5853 + 5608 5853 132920 67 5 4 14 1 0 47 2 1 19 1 0 93 chain 93192 chr20 63025520 + 40413866 40414891 L1PA2 6032 - 0 1026 38602 150 0 1 875 chain 10859 chr20 63025520 + 40425944 40426096 MLT2D 439 - 283 438 156752 34 0 3 28 0 2 5 2 0 83 chain 534545 chr20 63025520 + 40429939 40436037 L1PA5 6144 - 0 6141 3645 843 0 4 467 0 3 717 0 2 156 0 11 676 1 8 60 0 1 26 7 6 971 0 2 747 0 9 1150 0 3 72 0 1 81 0 1 124 chain 38350 chr20 63025520 + 40436907 40437364 L1PA7 6471 - 10 463 71646 85 1 0 168 5 2 198 chain 4337 chr20 63025520 + 40447219 40447302 MIR 256 + 109 175 202738 49 21 4 13 chain 61537 chr20 63025520 + 40452940 40453894 L1MA3 4352 - 0 933 52097 14 9 6 4 1 0 14 1 0 19 8 7 6 1 0 15 9 7 26 4 0 63 0 3 18 0 3 34 3 0 7 45 14 24 13 18 145 0 1 364 0 14 107 chain 7929 chr20 63025520 + 40454913 40455083 L1MA5A 2387 + 2155 2295 171448 32 1 0 24 1 0 4 3 0 10 31 5 44 1 2 19 chain 81311 chr20 63025520 + 40475702 40476599 L1PA3long 6157 - 0 899 43039 332 0 1 449 0 1 116 chain 14523 chr20 63025520 + 40476611 40476774 L1PA3long 6157 + 5099 5262 142818 163 chain 7464 chr20 63025520 + 40483111 40483280 L1MA5A 2387 - 12 157 174379 12 6 4 19 1 0 9 2 0 11 32 14 11 1 0 65 chain 17020 chr20 63025520 + 40496105 40496397 L1PA14 3548 - 92 384 135538 42 2 1 15 1 0 11 13 10 33 17 12 58 0 11 42 2 1 56 chain 40566 chr20 63025520 + 40496400 40496935 L1PREC2 3366 + 2315 2850 68485 75 13 9 164 4 9 23 0 1 150 0 1 5 2 0 54 1 0 44 chain 4071 chr20 63025520 + 40515859 40515903 L1PA8A 6298 + 6011 6055 206309 44 chain 4463 chr20 63025520 + 40529979 40530031 MER5A 189 + 131 183 201193 52 chain 19327 chr20 63025520 + 40545887 40546144 L1PA6 6164 + 5875 6132 129155 127 16 16 114 chain 9214 chr20 63025520 + 40572006 40572114 L1PA7 6471 + 6349 6457 164486 108 chain 242402 chr20 63025520 + 40593738 40596604 L1PA7 6471 - 10 2894 16650 293 0 4 32 0 1 157 0 1 161 0 3 186 5 8 71 0 1 563 0 1 211 0 1 98 0 4 144 0 2 15 1 0 670 2 0 257 chain 76712 chr20 63025520 + 40599535 40600503 LTR5_Hs 974 + 0 974 45115 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 4618 chr20 63025520 + 40634035 40634091 LTR16A1 462 - 355 411 199428 56 chain 117352 chr20 63025520 + 40637989 40639631 THE1C-int 1605 - 0 1605 32009 9 0 1 288 82 0 214 7 12 16 0 3 288 14 33 106 4 7 81 6 8 17 3 0 39 1 0 4 0 1 26 0 7 110 0 6 268 3 4 39 1 2 16 chain 10548 chr20 63025520 + 40683623 40683736 L1PA2 6032 + 5916 6029 158051 113 chain 22878 chr20 63025520 + 40689068 40689424 THE1B 368 + 0 368 116197 34 6 21 117 1 0 20 3 1 71 28 9 12 0 19 64 chain 43406 chr20 63025520 + 40779784 40780384 L1PA8 5853 - 0 594 64928 11 4 0 81 2 1 19 2 1 36 5 6 10 7 0 9 3 0 5 5 12 4 0 1 39 6 8 48 1 0 303 chain 30126 chr20 63025520 + 40796476 40796927 Tigger2a 444 - 0 438 84396 347 12 0 21 42 41 29 chain 20621 chr20 63025520 + 40823548 40823789 L1PA4 6152 + 5893 6135 125218 108 0 1 133 chain 8263 chr20 63025520 + 40833707 40833798 L1PA5 6144 + 5982 6072 169606 50 1 0 40 chain 551149 chr20 63025520 + 40834909 40840957 L1PA2 6032 + 0 6032 1294 74 0 1 182 1 0 244 9 0 1697 1 0 445 2 0 1574 0 3 1747 7 0 65 chain 4204 chr20 63025520 + 40856773 40856870 MADE1 96 - 0 96 204485 40 34 33 23 chain 4118 chr20 63025520 + 40877559 40877611 MIRb 242 - 23 75 205669 52 chain 16410 chr20 63025520 + 40895787 40896038 MER47A 366 + 107 353 137183 123 5 0 60 0 16 15 20 4 28 chain 4031 chr20 63025520 + 40896068 40896142 MER33 330 + 212 287 206906 41 16 17 17 chain 45033 chr20 63025520 + 40917598 40918262 L1PA17 2846 + 2041 2693 63014 156 0 2 171 0 1 28 13 0 16 0 7 77 4 0 20 7 0 16 1 0 65 11 10 22 1 0 5 9 14 42 chain 42691 chr20 63025520 + 40941528 40942078 MER41A 554 + 0 554 65786 158 0 1 6 8 7 170 0 1 15 0 3 193 chain 11447 chr20 63025520 + 40943732 40943853 AluYb8 318 + 196 317 154509 121 chain 150787 chr20 63025520 + 40950750 40952411 L1PA3long 6157 + 4496 6157 24504 617 0 1 830 1 0 213 chain 98462 chr20 63025520 + 41016827 41017926 L1PA5 6144 + 5045 6144 37171 482 0 1 251 1 0 365 chain 61574 chr20 63025520 + 41033834 41034530 L1PA5 6144 - 0 696 52085 696 chain 40213 chr20 63025520 + 41056300 41056741 LTR7Y 441 + 0 441 69013 441 chain 15873 chr20 63025520 + 41077395 41077624 MER30 238 - 0 238 138730 50 9 6 56 4 16 110 chain 5574 chr20 63025520 + 41117753 41117817 L1PA4 6152 - 11 75 189330 64 chain 3637 chr20 63025520 + 41127790 41127833 Tigger2 2703 + 356 399 213032 43 chain 48740 chr20 63025520 + 41144377 41144905 L1PA2 6032 + 5502 6030 59918 528 chain 19445 chr20 63025520 + 41193098 41193396 L1PA8 5853 + 5574 5853 128835 35 2 0 69 2 1 9 12 6 26 9 1 19 2 1 19 1 0 93 chain 22694 chr20 63025520 + 41203342 41203701 THE1D 372 + 0 349 117103 135 0 4 43 55 42 116 1 0 9 chain 183082 chr20 63025520 + 41207555 41209622 L1PA4 6152 - 6 2079 20673 762 1 0 5 1 3 81 0 1 8 0 4 1209 chain 553839 chr20 63025520 + 41243577 41249607 L1PA2 6032 - 2 6032 966 3264 1 0 308 0 1 2457 chain 12421 chr20 63025520 + 41249618 41249787 THE1B 368 - 196 368 150559 126 1 6 24 3 1 15 chain 24044 chr20 63025520 + 41277758 41278071 THE1B 368 - 58 368 110091 113 2 0 13 8 10 5 3 0 169 chain 118320 chr20 63025520 + 41293394 41294734 L1PA4 6152 + 4797 6143 31682 174 2 0 333 0 4 7 0 1 60 4 6 626 0 1 134 chain 27183 chr20 63025520 + 41300711 41301154 MLT2A2 560 + 0 560 95655 180 1 0 13 30 33 76 2 111 17 25 31 38 2 1 5 0 1 54 chain 4738 chr20 63025520 + 41339193 41339250 MSTB-int 1649 - 690 747 198053 57 chain 38672 chr20 63025520 + 41344894 41345331 L1PA4 6152 - 502 940 71189 84 0 1 353 chain 43969 chr20 63025520 + 41345332 41345821 L1PA4 6152 + 5647 6136 64235 489 chain 22604 chr20 63025520 + 41414529 41414898 THE1D 372 + 4 372 117576 52 31 22 110 31 33 13 1 7 131 chain 453479 chr20 63025520 + 41446320 41452139 L1PA8A 6298 + 468 6291 8635 208 3 4 431 43 36 112 18 18 94 1 19 90 28 1 141 1 0 201 0 1 657 4 7 16 24 0 46 0 4 124 0 2 169 7 6 51 3 4 466 12 13 30 0 4 128 4 5 304 0 2 15 1 2 390 0 1 404 0 2 186 0 8 261 0 1 357 0 3 5 0 1 13 0 1 56 0 2 170 0 7 440 2 1 103 chain 88161 chr20 63025520 + 41476489 41477839 L1PB1 5432 - 5 1341 40316 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 12 33 21 11 1 0 6 1 0 60 18 16 52 18 12 12 3 2 4 1 0 24 3 0 5 10 11 27 14 13 4 0 1 27 5 12 83 0 3 75 0 1 77 3 0 152 4 14 229 1 0 202 0 3 78 1 0 6 chain 4968 chr20 63025520 + 41502317 41502381 MER33 330 - 201 279 195498 49 0 14 15 chain 87979 chr20 63025520 + 41521689 41522661 L1PA3long 6157 + 5181 6157 40382 129 0 4 843 chain 24274 chr20 63025520 + 41524995 41525295 AluSp 311 + 1 302 108818 69 0 1 231 chain 3098 chr20 63025520 + 41525301 41525335 MER45A 178 - 78 112 222955 34 chain 13432 chr20 63025520 + 41533221 41533386 LTR1 825 + 12 191 146564 31 0 1 24 0 13 110 chain 115295 chr20 63025520 + 41533391 41534709 L1PA6 6164 + 4838 6162 32682 379 0 1 912 0 10 12 5 0 10 chain 146201 chr20 63025520 + 41544605 41546237 L1PA4 6152 - 0 1636 25132 844 0 4 788 chain 5028 chr20 63025520 + 41604435 41604492 L1PA8A 6298 + 6231 6288 194848 57 chain 43489 chr20 63025520 + 41607153 41607701 MER41A 554 + 0 549 64828 318 0 1 5 1 0 72 2 3 150 chain 4122 chr20 63025520 + 41637356 41637418 MLT1A0 366 + 290 355 205630 30 1 5 13 1 0 17 chain 38263 chr20 63025520 + 41640351 41640858 MLT2A2 560 + 0 560 71759 27 0 36 36 1 3 65 12 13 15 0 3 204 0 11 147 chain 13006 chr20 63025520 + 41647814 41647977 MLT2B5 662 + 0 163 148225 163 chain 64402 chr20 63025520 + 41698884 41699618 L1PA5 6144 + 5403 6144 50838 593 5 12 136 chain 24316 chr20 63025520 + 41700142 41700433 AluSp 311 + 0 290 108567 41 1 0 249 chain 24732 chr20 63025520 + 41712904 41713272 THE1D 372 - 0 372 106263 159 33 35 20 1 2 129 1 2 25 chain 24688 chr20 63025520 + 41723027 41723336 AluSp 311 - 1 311 106507 245 7 8 57 chain 11510 chr20 63025520 + 41730511 41730752 MLT1A1 405 - 11 286 154252 99 46 87 36 28 20 25 0 1 7 chain 29137 chr20 63025520 + 41758250 41758557 AluYa5 310 - 3 310 88380 307 chain 27826 chr20 63025520 + 41762886 41763350 MER31A 484 + 0 484 93601 87 94 115 266 0 2 9 3 0 5 chain 6225 chr20 63025520 + 41773231 41773418 L1MB8 1703 + 1533 1660 183359 46 76 23 22 9 0 17 0 2 17 chain 21026 chr20 63025520 + 41801509 41801759 AluSp 311 - 9 257 123831 195 1 0 17 1 0 36 chain 27743 chr20 63025520 + 41886528 41886842 AluYa5 310 + 0 307 93892 126 4 0 168 3 0 13 chain 31447 chr20 63025520 + 41916675 41917474 MER1A 529 - 0 485 81739 39 397 83 363 chain 37268 chr20 63025520 + 41932222 41932677 LTR2 463 - 0 463 73138 86 17 18 188 1 5 108 0 3 55 chain 71308 chr20 63025520 + 41955824 41956804 L1PA7 6471 - 14 969 47790 14 0 1 162 0 4 49 1 2 9 0 68 254 0 1 90 104 0 79 0 1 99 1 4 118 chain 2783 chr20 63025520 + 41961770 41961849 LTR10C 591 + 0 80 64710 9 1 0 25 2 0 7 1 5 34 chain 58225 chr20 63025520 + 41961859 41962511 SVA_D 2077 + 1423 2075 53853 21 0 1 480 11 10 140 chain 17473 chr20 63025520 + 41962511 41963007 LTR10C 591 + 80 591 64710 92 0 13 19 1 0 16 0 1 289 0 2 79 chain 99779 chr20 63025520 + 41966499 41967665 SVA_B 1603 - 0 1590 36835 6 2 0 582 1 322 59 5 6 37 1 0 56 0 76 388 3 32 26 chain 27317 chr20 63025520 + 41995296 41995676 L1PA16 3655 + 3209 3590 95217 9 0 1 71 2 0 108 0 5 78 5 6 84 1 0 7 3 0 12 chain 127650 chr20 63025520 + 41997091 41998577 L1P1 4361 + 2850 4341 28659 33 0 6 346 0 1 357 7 8 8 1 0 433 0 1 107 1 0 155 1 0 23 2 1 12 chain 34235 chr20 63025520 + 42000000 42000377 L1PA3long 6157 + 5780 6157 77300 377 chain 17441 chr20 63025520 + 42006073 42006422 L1PB1 5432 - 10 325 134400 18 1 0 13 2 1 20 1 0 24 2 0 15 1 0 4 3 1 13 22 12 21 1 0 44 1 0 15 2 1 50 19 13 11 1 0 8 1 0 23 5 0 8 chain 4791 chr20 63025520 + 42007050 42007104 MER5A 189 + 3 57 197454 54 chain 25054 chr20 63025520 + 42011008 42011434 LTR7 482 + 0 476 104527 56 2 0 30 0 50 47 44 0 28 11 53 42 1 2 11 0 2 98 13 14 43 chain 5010 chr20 63025520 + 42016165 42016230 LTR16C 481 - 19 84 195027 56 1 0 4 0 1 4 chain 108735 chr20 63025520 + 42024636 42025792 L1HS 6032 - 1 1157 34495 1156 chain 265943 chr20 63025520 + 42030070 42033065 L1PA5 6144 - 0 3008 15395 113 1 0 737 2 3 255 1 0 288 0 5 393 0 8 399 0 1 806 chain 5733 chr20 63025520 + 42034119 42034187 U6 107 + 7 76 187810 55 0 1 13 chain 5921 chr20 63025520 + 42046872 42046998 L1PB2 3958 - 120 245 185980 19 46 45 61 chain 30038 chr20 63025520 + 42049557 42049925 THE1B 368 + 1 368 84691 171 2 1 195 chain 13695 chr20 63025520 + 42051055 42051323 L1MA5A 2387 + 2064 2285 145616 6 2 0 38 6 5 25 2 0 17 2 0 26 10 0 34 45 15 55 chain 32598 chr20 63025520 + 42067245 42067702 MER51A 677 + 0 677 79850 168 0 1 7 7 169 16 0 1 30 2 32 89 1 20 37 0 4 40 0 3 60 chain 8532 chr20 63025520 + 42079800 42079900 HY3 101 - 1 101 168122 100 chain 19492 chr20 63025520 + 42082002 42082257 LTR12_ 688 - 0 375 128679 5 0 2 107 1 2 56 1 120 15 1 0 64 1 0 4 chain 20810 chr20 63025520 + 42084878 42085147 LTR12_ 688 + 2 296 124568 178 0 24 39 5 6 47 chain 9179 chr20 63025520 + 42101652 42101758 U6 107 + 0 106 164658 106 chain 4285 chr20 63025520 + 42107470 42107516 L1PA3long 6157 + 6111 6157 203421 46 chain 22867 chr20 63025520 + 42114899 42115239 THE1B 368 - 0 368 116247 123 37 47 29 1 0 25 0 4 81 0 15 44 chain 125450 chr20 63025520 + 42115244 42116807 THE1B-int 1605 - 6 1605 29260 361 0 6 47 8 9 9 0 1 715 2 27 308 0 3 113 chain 41880 chr20 63025520 + 42122758 42123606 MER41A 554 - 0 541 66790 28 1 0 113 323 17 203 1 0 4 0 1 175 chain 4624 chr20 63025520 + 42125300 42125358 MLT1D 503 + 445 503 199363 58 chain 8791 chr20 63025520 + 42129875 42130063 THE1D 372 + 147 332 166695 19 40 42 17 1 0 8 19 15 84 chain 3151 chr20 63025520 + 42141233 42141271 MER3 215 + 172 210 221906 38 chain 143869 chr20 63025520 + 42235231 42236836 SVA_D 2077 - 4 2075 25500 346 0 3 186 0 352 148 0 2 34 0 86 309 1 24 374 1 0 67 0 1 139 chain 23875 chr20 63025520 + 42239106 42239400 AluY 311 + 15 304 111055 108 4 1 5 2 0 175 chain 7983 chr20 63025520 + 42256911 42256998 L1P3 4156 - 3354 3441 171147 87 chain 22233 chr20 63025520 + 42273919 42274190 AluY 311 + 8 276 119195 20 4 0 104 0 1 143 chain 25040 chr20 63025520 + 42276809 42277095 AluYc3 301 - 14 301 104600 171 2 3 113 chain 30043 chr20 63025520 + 42281363 42281681 AluYb8 318 + 0 318 84663 318 chain 21915 chr20 63025520 + 42281997 42282271 AluSp 311 + 11 288 120564 56 0 2 63 12 14 124 1 0 18 chain 23144 chr20 63025520 + 42294800 42295114 AluSc 308 + 6 299 114916 116 26 4 7 0 1 165 chain 24201 chr20 63025520 + 42300103 42300399 AluSp 311 - 3 301 109205 250 13 15 33 chain 63439 chr20 63025520 + 42306251 42306946 SVA_D 2077 + 1271 2066 51270 41 0 98 376 0 2 278 chain 25154 chr20 63025520 + 42314403 42314702 AluSp 311 + 8 302 103990 282 5 0 12 chain 32863 chr20 63025520 + 42361222 42361681 MER4A1 472 - 14 472 79431 44 13 15 162 14 12 216 1 0 9 chain 6170 chr20 63025520 + 42376502 42376574 MSTA 426 + 354 426 183800 72 chain 23468 chr20 63025520 + 42386435 42386806 THE1B 368 - 0 368 113276 61 17 5 59 42 52 22 1 0 169 chain 9440 chr20 63025520 + 42417665 42417793 L1MB3 1562 - 650 781 163360 32 0 1 4 5 7 87 chain 557836 chr20 63025520 + 42443101 42449131 L1PA2 6032 + 1 6029 519 5178 3 1 849 chain 4074 chr20 63025520 + 42449988 42450064 Charlie1b 519 - 5 80 206282 24 16 15 36 chain 27354 chr20 63025520 + 42455643 42456014 THE1B 368 - 0 368 95099 151 19 17 31 1 0 169 chain 27694 chr20 63025520 + 42457633 42457994 THE1B 368 - 0 368 94062 49 5 13 132 3 2 172 chain 29850 chr20 63025520 + 42480557 42480870 AluYb8 318 - 5 318 85282 313 chain 526362 chr20 63025520 + 42499805 42505911 L1PA5 6144 - 16 6142 4560 195 2 2 636 0 4 491 0 1 51 0 5 409 19 20 362 0 2 120 0 2 57 0 1 95 1 0 173 1 0 324 0 1 59 0 8 803 0 1 1135 9 0 137 1 0 4 1 2 827 10 1 41 10 24 133 chain 8893 chr20 63025520 + 42516519 42516747 MSTB2 466 + 228 466 166171 21 34 35 21 43 55 89 9 6 11 chain 3812 chr20 63025520 + 42521363 42521407 MLT2C2 476 - 0 44 210210 44 chain 24884 chr20 63025520 + 42526325 42526620 AluSc5 308 + 4 300 105444 249 0 1 46 chain 3076 chr20 63025520 + 42537053 42537088 MIR 256 + 90 125 223378 35 chain 29314 chr20 63025520 + 42538764 42539072 AluYk12 309 - 1 309 87476 308 chain 2834 chr20 63025520 + 42561842 42561902 MLT1A0 366 - 294 366 228164 10 0 12 17 1 0 9 7 8 16 chain 5014 chr20 63025520 + 42573458 42573549 MIRb 242 - 102 212 194976 39 20 39 32 chain 3070 chr20 63025520 + 42596615 42596650 MER33 330 + 257 292 223565 35 chain 41667 chr20 63025520 + 42608167 42608876 L1MA2 4263 + 3410 4113 67070 102 20 26 36 18 12 44 4 5 24 19 18 43 0 1 75 13 10 138 0 2 9 1 0 9 2 1 17 9 10 66 7 0 16 1 0 12 1 5 14 1 0 8 chain 10177 chr20 63025520 + 42638187 42638316 MER85 139 - 0 139 159734 39 1 11 89 chain 12024 chr20 63025520 + 42648952 42649105 L1PA8 5853 + 5702 5853 152100 42 1 0 16 2 1 92 chain 11823 chr20 63025520 + 42654905 42655098 L1PB1 5432 + 5114 5296 152928 24 1 0 9 1 0 9 2 0 3 2 0 6 3 1 54 2 1 15 1 0 41 4 3 16 chain 2938 chr20 63025520 + 42665074 42665105 MIRb 242 + 100 131 226354 31 chain 20112 chr20 63025520 + 42666454 42666721 THE1D-int 1627 + 0 276 126790 12 11 13 178 0 7 66 chain 45689 chr20 63025520 + 42672544 42673076 L1PA5 6144 + 5611 6144 62324 377 9 10 146 chain 34808 chr20 63025520 + 42676130 42676502 SVA_F 1814 + 1440 1814 76460 358 0 2 14 chain 355058 chr20 63025520 + 42687261 42692747 L1PB1 5432 + 26 5392 11473 229 15 33 250 39 42 7 0 4 11 0 1 152 12 19 206 3 93 91 4 12 37 0 14 6 15 16 59 0 2 74 17 20 6 2 0 97 0 1 23 3 10 6 4 0 186 7 13 69 2 1 25 4 0 72 0 2 30 0 1 150 4 1 93 3 0 219 7 8 33 1 2 47 0 1 10 0 5 244 1 24 98 8 30 18 0 4 39 2 0 35 5 0 7 2 0 7 290 16 169 0 6 56 0 2 149 12 23 53 0 1 215 57 24 83 0 4 231 9 14 61 0 1 262 3 1 98 0 3 14 1 5 87 2 1 5 0 4 12 0 1 106 0 1 29 0 13 31 0 11 173 8 11 15 0 4 71 0 4 12 83 15 20 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 2 1 10 2 5 45 1 0 15 1 0 6 15 9 13 37 33 13 1 0 22 chain 18524 chr20 63025520 + 42690112 42690347 L1PB1 5432 + 3317 3557 130991 26 0 1 144 0 4 65 chain 41760 chr20 63025520 + 42726619 42727204 LTR71B 605 + 0 574 66950 137 18 15 112 25 17 71 1 0 21 15 16 185 chain 66378 chr20 63025520 + 42729801 42730779 L1PA15 4387 + 3412 4366 49919 282 0 1 13 8 7 97 2 0 53 1 5 20 2 0 42 1 0 172 7 6 20 10 9 37 4 0 9 1 0 21 4 0 11 1 0 50 6 3 46 23 16 24 1 0 10 chain 25557 chr20 63025520 + 42735179 42735533 THE1B 368 - 2 368 101945 64 0 2 7 1 0 75 0 1 23 1 0 26 1 0 9 0 1 92 11 22 44 chain 3660 chr20 63025520 + 42746164 42746291 MER5A 189 + 7 136 212577 15 65 66 31 1 2 15 chain 4289 chr20 63025520 + 42751072 42751156 MER96B 391 + 92 171 203364 18 0 1 23 3 0 15 9 6 16 chain 3640 chr20 63025520 + 42768295 42768362 MADE2 80 - 0 68 212962 30 12 13 25 chain 3875 chr20 63025520 + 42770842 42770891 MER3 215 + 9 58 209225 49 chain 5879 chr20 63025520 + 42854301 42854373 L1PA16 3655 - 77 149 186383 72 chain 9572 chr20 63025520 + 42873993 42874143 MSTA 426 - 25 145 162728 42 30 0 78 chain 8415 chr20 63025520 + 42895491 42895612 MER30 238 - 1 113 168752 46 3 0 60 6 0 6 chain 29077 chr20 63025520 + 42898804 42899109 AluYa5 310 - 5 310 88656 305 chain 7375 chr20 63025520 + 42913847 42913970 L1MA3 4352 - 35 150 174935 29 1 0 5 2 1 24 2 0 23 4 0 33 chain 123383 chr20 63025520 + 42927590 42929018 LTR12C 1709 + 0 1708 29922 446 1 0 204 0 278 184 1 0 4 4 2 106 0 4 117 0 2 361 chain 3730 chr20 63025520 + 42949608 42949648 L1MC5 759 + 362 402 211460 40 chain 4648 chr20 63025520 + 42973487 42973564 HY1 111 + 9 105 199079 53 1 0 4 6 26 13 chain 21279 chr20 63025520 + 42993106 42993407 AluSg7 307 - 6 307 122931 21 6 5 120 23 24 131 chain 17131 chr20 63025520 + 43003646 43004053 L1PA17 2846 - 153 481 135228 17 53 6 21 1 0 7 7 10 32 1 0 59 7 6 18 5 0 15 4 0 12 58 35 90 chain 3714 chr20 63025520 + 43031954 43032002 MIRb 242 + 96 143 211720 42 1 0 5 chain 3000 chr20 63025520 + 43042784 43042824 MIRc 230 + 68 108 225029 40 chain 13563 chr20 63025520 + 43084817 43085052 AluJr4 308 + 37 271 146123 65 57 56 113 chain 3788 chr20 63025520 + 43125450 43125498 HY3 101 + 43 98 210536 34 0 7 14 chain 16949 chr20 63025520 + 43134667 43134941 AluSq10 312 + 8 302 135734 152 60 80 62 chain 24975 chr20 63025520 + 43153406 43153811 LTR7 482 + 0 477 104931 31 27 28 12 31 19 20 7 57 57 5 37 44 0 1 171 chain 7860 chr20 63025520 + 43155011 43155164 MER51B 395 + 66 241 171941 32 15 21 48 10 27 16 1 0 4 0 1 13 2 1 12 chain 6471 chr20 63025520 + 43168360 43168463 MER30 238 + 67 238 181467 39 16 84 48 chain 29028 chr20 63025520 + 43178848 43179288 HSMAR2 1300 - 1 422 88861 28 1 0 67 14 15 97 8 6 79 16 0 16 0 1 6 1 0 39 3 0 19 0 2 46 chain 31275 chr20 63025520 + 43298869 43299318 LTR7B 505 + 0 491 82027 108 0 10 57 45 77 26 0 2 85 1 0 76 14 13 37 chain 32962 chr20 63025520 + 43304948 43305415 LTR7B 505 + 0 505 79269 108 0 10 57 15 77 27 33 1 85 1 0 76 2 1 63 chain 32853 chr20 63025520 + 43359153 43359646 LTR3B_ 500 + 2 462 79452 69 6 5 75 10 11 140 1 2 104 0 2 10 38 2 40 chain 39372 chr20 63025520 + 43362586 43363119 MER41A 554 + 0 546 70213 15 0 1 71 5 6 82 9 14 241 0 1 36 1 6 73 chain 41737 chr20 63025520 + 43363544 43364636 MER41A 554 - 21 543 66978 62 0 5 38 0 1 9 576 0 407 chain 5463 chr20 63025520 + 43363667 43363726 MER41A 554 + 97 156 190385 59 chain 2198 chr20 63025520 + 43363733 43363761 MER41A 554 + 164 192 236586 28 chain 7472 chr20 63025520 + 43364101 43364227 MER41A 554 - 0 125 174333 44 0 1 7 12 5 24 0 5 39 chain 4904 chr20 63025520 + 43365103 43365157 MLT1J2 417 - 304 358 196243 54 chain 10193 chr20 63025520 + 43451477 43451608 MER85 139 + 0 139 159660 96 5 13 30 chain 16196 chr20 63025520 + 43453842 43454164 THE1B 368 - 42 368 137768 14 2 3 6 2 0 44 27 35 10 0 1 4 1 0 4 0 5 7 35 26 50 5 6 111 chain 14002 chr20 63025520 + 43470036 43470554 MER75B 242 - 8 192 144571 8 1 0 10 3 0 111 330 0 55 chain 10279 chr20 63025520 + 43471180 43471334 MER75 514 - 250 469 159241 107 1 5 13 7 68 26 chain 9600 chr20 63025520 + 43481321 43481477 MLT1A1 405 - 15 164 162600 58 2 1 35 17 11 44 chain 28022 chr20 63025520 + 43484298 43484596 AluYa5 310 + 13 310 92924 119 1 0 178 chain 49185 chr20 63025520 + 43492085 43492753 LTR76 689 + 0 682 59606 49 0 3 277 0 12 8 0 1 26 5 6 9 0 1 157 1 2 89 2 0 7 8 7 9 2 0 19 chain 21045 chr20 63025520 + 43493078 43493381 THE1B 368 - 63 368 123751 62 5 4 8 4 0 17 17 24 9 0 1 11 1 0 169 chain 6650 chr20 63025520 + 43494108 43494194 MLT2A2 560 + 470 560 180094 80 0 4 6 chain 13519 chr20 63025520 + 43511351 43511596 L1MC2 1988 + 1759 1988 146284 35 3 0 53 18 14 55 25 17 15 1 0 40 chain 10711 chr20 63025520 + 43598764 43598880 L1PA3long 6157 + 6041 6157 157367 116 chain 5681 chr20 63025520 + 43632696 43633093 HY3 101 + 5 100 188288 42 310 7 10 1 2 34 chain 59994 chr20 63025520 + 43661204 43662205 L1PA15 4387 - 21 995 52831 31 45 39 26 6 3 46 14 8 28 11 10 32 13 12 27 8 7 92 2 4 4 1 0 65 1 0 25 1 0 9 10 8 44 0 1 9 11 7 17 2 0 319 2 1 100 chain 5006 chr20 63025520 + 43664646 43664759 L1MA8 2339 + 2160 2262 195061 38 4 0 7 1 0 13 16 15 10 4 0 14 1 0 5 chain 2894 chr20 63025520 + 43685072 43685108 L1ME1 1623 - 138 175 227122 19 0 1 17 chain 32322 chr20 63025520 + 43691945 43692438 L1PA15 4387 - 426 905 80323 29 1 0 19 6 7 16 10 8 44 9 5 13 9 7 104 2 0 217 4 0 10 chain 9724 chr20 63025520 + 43694599 43694762 MER44B 551 + 296 459 161968 57 37 37 69 chain 6581 chr20 63025520 + 43699545 43699716 THE1B 368 - 207 368 180604 11 7 11 31 61 47 61 chain 3043 chr20 63025520 + 43710628 43710661 MER2 342 + 0 33 224136 33 chain 37770 chr20 63025520 + 43717063 43717554 LTR3B_ 500 + 6 500 72461 70 1 0 80 5 6 135 1 2 49 0 1 58 0 2 45 1 0 46 chain 5811 chr20 63025520 + 43727837 43727909 MER5A 189 + 4 76 187030 72 chain 221705 chr20 63025520 + 43768518 43771166 HERVL-int 5654 - 2989 5654 17771 443 1 2 129 1 0 4 0 1 74 5 2 389 2 1 52 0 5 914 1 0 100 0 18 401 3 0 64 0 1 65 chain 32881 chr20 63025520 + 43771166 43771616 MLT2A1 477 - 0 477 79395 41 6 34 19 0 13 196 11 8 69 11 0 97 chain 109726 chr20 63025520 + 43783762 43785344 THE1C-int 1605 + 25 1605 34275 85 0 54 213 1 0 57 0 1 6 139 66 35 2 3 159 9 10 27 7 16 382 0 4 72 3 4 376 0 1 9 chain 90526 chr20 63025520 + 43796083 43797128 L1PA5 6144 + 5095 6138 39464 85 10 1 807 0 7 143 chain 24905 chr20 63025520 + 43820262 43820560 AluSc 308 - 10 308 105308 298 chain 142159 chr20 63025520 + 43823881 43825429 L1PA3long 6157 - 0 1548 25793 1548 chain 14352 chr20 63025520 + 43844594 43844951 L1PB1 5432 + 5107 5424 143372 7 1 0 24 1 0 9 16 11 11 11 9 42 6 5 12 1 0 44 1 0 15 1 0 4 2 0 10 9 0 11 21 11 14 2 0 16 9 8 21 1 0 13 1 0 16 1 0 4 chain 11057 chr20 63025520 + 43879698 43879834 LTR13A 966 - 9 151 155984 56 0 6 80 chain 12519 chr20 63025520 + 43959613 43959765 MER41B 635 + 485 635 150168 116 2 0 34 chain 15172 chr20 63025520 + 43959851 43960056 MER41-int 2638 + 2429 2636 140849 22 1 2 97 1 2 84 chain 29003 chr20 63025520 + 43993102 43993410 AluYa5 310 - 2 310 88972 308 chain 23450 chr20 63025520 + 44007384 44007669 AluSc 308 - 8 293 113381 285 chain 7901 chr20 63025520 + 44010410 44010550 L1MB3 1562 - 149 298 171647 61 1 0 9 4 1 21 12 25 32 chain 4086 chr20 63025520 + 44015507 44015558 L1MD1 2063 - 419 470 206128 51 chain 117542 chr20 63025520 + 44028542 44030100 THE1C-int 1605 + 33 1594 31949 83 0 1 90 0 1 104 15 21 112 0 7 72 6 4 252 0 1 258 7 8 105 1 2 204 13 0 236 chain 22843 chr20 63025520 + 44030112 44030451 THE1C 375 + 2 348 116379 71 20 21 85 0 2 5 7 8 9 0 3 142 chain 3732 chr20 63025520 + 44052186 44052246 L1MC2 1988 - 0 59 211425 38 6 5 16 chain 12876 chr20 63025520 + 44053875 44054036 L1PA8 5853 - 0 159 148721 93 1 0 19 2 1 46 chain 13062 chr20 63025520 + 44069044 44069235 MER4E1 777 + 556 768 147985 61 24 44 89 0 1 17 chain 8954 chr20 63025520 + 44088683 44089472 LOR1-int 1871 + 93 1079 165859 72 1 0 4 2 1 18 78 31 23 544 790 47 chain 7780 chr20 63025520 + 44111042 44111154 MER50 708 + 11 121 172418 42 8 6 62 chain 79870 chr20 63025520 + 44111468 44112994 MER41-int 2638 - 1258 2552 43655 28 0 6 23 24 21 211 0 4 49 1 5 25 0 3 182 232 14 54 0 2 24 0 2 29 0 2 219 0 4 10 1 0 8 6 1 9 1 0 75 0 1 53 26 22 9 1 0 25 56 50 27 38 23 48 14 8 18 chain 19430 chr20 63025520 + 44145220 44145474 MER47A 366 + 39 294 128872 76 1 2 177 chain 24385 chr20 63025520 + 44156852 44157125 L1PA4 6152 - 5 278 108164 273 chain 6469 chr20 63025520 + 44186371 44186446 HSMAR1 1287 + 1208 1282 181489 70 1 0 4 chain 24135 chr20 63025520 + 44200768 44201059 AluY 311 + 11 306 109551 51 3 6 64 1 2 172 chain 4420 chr20 63025520 + 44202219 44202293 L1PB3 3668 - 113 183 201690 26 3 1 25 5 3 15 chain 28567 chr20 63025520 + 44212892 44213293 LTR7 482 - 9 482 90879 40 13 14 107 1 0 4 0 1 15 0 31 35 0 2 105 10 48 71 chain 210709 chr20 63025520 + 44214326 44216780 HERVH-int 3825 - 0 2471 18457 450 0 1 154 0 1 130 0 3 6 0 3 392 1 0 8 0 1 13 0 3 656 0 4 118 0 1 355 0 1 171 chain 4196 chr20 63025520 + 44244119 44244238 Tigger1 2417 - 0 118 204610 33 50 49 23 1 0 6 0 1 6 chain 7701 chr20 63025520 + 44252387 44252549 L1MA5A 2387 - 12 157 172933 16 2 0 19 1 0 4 7 6 13 23 11 11 1 0 65 chain 25496 chr20 63025520 + 44267892 44268184 AluYc 301 - 1 293 102240 292 chain 161625 chr20 63025520 + 44273660 44275470 SVA_D 2077 - 0 2077 23112 595 0 98 299 0 51 73 0 82 154 0 37 207 0 1 452 1 0 6 1 0 4 0 2 5 1 0 6 1 0 5 chain 525791 chr20 63025520 + 44280120 44286224 L1PA4 6152 + 17 6143 4603 114 0 14 377 0 1 37 0 1 179 0 1 77 0 17 7 17 0 319 0 3 130 3 1 333 0 4 335 4 1 125 0 1 2686 4 2 523 0 4 834 chain 4978 chr20 63025520 + 44286409 44286499 Tigger5 388 + 182 268 195393 52 7 6 5 1 0 15 2 0 8 chain 20951 chr20 63025520 + 44287006 44287307 L1PB 1623 - 1234 1525 124101 119 2 1 77 2 0 5 1 0 20 4 1 49 1 0 5 1 0 10 1 0 4 chain 107024 chr20 63025520 + 44287361 44288681 L1PA7 6471 - 1 1329 34964 4 1 0 142 6 10 4 1 0 23 11 13 33 0 4 399 0 1 216 2 0 332 0 1 146 chain 462270 chr20 63025520 + 44289056 44295195 L1PA3long 6157 - 0 6149 8316 259 1 0 1962 1 0 626 3 1 56 8 5 71 1 0 494 0 2 12 0 1 274 0 4 71 1 0 180 0 3 155 12 13 33 0 1 250 0 1 47 0 1 267 0 1 66 94 94 25 13 4 213 25 0 98 3 0 8 1 4 10 10 27 99 3 10 116 3 21 7 18 0 10 146 148 23 82 82 86 3 2 48 13 13 14 6 19 4 0 1 45 2 1 61 chain 547355 chr20 63025520 + 44316530 44322614 L1PA3long 6157 - 15 6153 1786 558 0 33 350 0 2 1254 0 1 52 0 1 581 0 1 46 0 4 569 1 0 531 0 1 299 1 2 449 1 6 210 0 3 183 0 1 429 0 2 570 chain 345683 chr20 63025520 + 44343652 44348884 L1PA11 4918 + 7 4567 11738 27 10 7 30 13 8 36 1 0 15 2 0 44 14 18 21 2 0 3 1 0 268 13 15 29 303 2 88 0 1 125 0 1 251 13 0 9 4 7 155 0 3 20 0 1 9 1 0 64 23 38 105 4 3 403 0 1 388 2 0 37 0 1 7 3 0 292 2 0 3 7 0 49 326 0 504 1 0 44 1 0 329 4 9 219 1 0 152 2 0 287 0 1 192 5 0 65 2 1 13 9 7 60 2 0 13 2 1 20 14 0 11 3 0 3 2 0 8 29 24 13 chain 81201 chr20 63025520 + 44357794 44358702 L1PA5 6144 - 3 917 43086 841 0 6 67 chain 22809 chr20 63025520 + 44365001 44366187 LTR12C 1709 + 773 1709 116534 31 0 1 4 0 39 199 428 576 18 438 0 68 chain 4695 chr20 63025520 + 44365239 44365344 LTR12C 1709 + 810 1037 159652 27 59 181 19 chain 30334 chr20 63025520 + 44387972 44388390 LTR7 482 + 0 482 83834 69 8 46 117 1 32 19 18 13 186 chain 251889 chr20 63025520 + 44388392 44392338 HERVH-int 3825 + 0 3825 16132 333 1 0 145 1 2 50 1 0 11 1 0 4 0 1 24 1 0 9 2 1 10 4 0 7 50 0 6 3 1 15 1 0 12 3 0 9 23 0 16 23 0 27 2 0 14 1 0 14 40 19 49 1 0 61 4 1 10 0 2 173 28 58 111 2 0 23 24 9 204 389 40 129 4 3 318 1 0 7 28 29 494 0 3 208 0 1 44 0 131 232 9 11 5 0 3 30 0 210 194 0 1 226 7 8 13 1 0 54 chain 30298 chr20 63025520 + 44393472 44393884 LTR7 482 + 0 482 83917 69 8 46 117 1 32 25 6 7 186 chain 6701 chr20 63025520 + 44397728 44397811 L1MB5 1630 - 473 556 179676 83 chain 110746 chr20 63025520 + 44425893 44427121 L1PA4 6152 + 4913 6141 34013 1228 chain 28378 chr20 63025520 + 44443469 44443775 AluYb8 318 - 11 318 91668 132 0 1 174 chain 26116 chr20 63025520 + 44464854 44465156 AluY 311 + 0 309 99544 71 0 6 57 0 1 174 chain 5693 chr20 63025520 + 44474375 44474446 MER3 215 + 60 131 188172 71 chain 21468 chr20 63025520 + 44498722 44498990 AluSg 306 + 22 292 122263 119 9 11 140 chain 2853 chr20 63025520 + 44545007 44545087 MIR 256 + 112 191 227803 20 37 36 23 chain 5363 chr20 63025520 + 44566533 44566599 Charlie19a 339 - 136 202 191411 66 chain 6960 chr20 63025520 + 44622595 44622682 MIR 256 + 23 110 177742 87 chain 9769 chr20 63025520 + 44634827 44634957 MER20 218 + 31 160 161749 51 3 0 5 0 2 71 chain 3736 chr20 63025520 + 44646372 44646516 MIR 256 - 28 154 211363 23 57 53 12 20 6 32 chain 3506 chr20 63025520 + 44721177 44721238 LTR12C 1709 + 1028 1175 215272 40 7 93 14 chain 2195 chr20 63025520 + 44721238 44721266 LTR12C 1709 + 809 837 219148 28 chain 2880 chr20 63025520 + 44721309 44721344 LTR12C 1709 + 683 718 227369 35 chain 4306 chr20 63025520 + 44734026 44734095 MIR 256 + 50 120 203130 39 8 9 22 chain 10627 chr20 63025520 + 44755661 44755783 L1PA4 6152 + 6029 6151 157701 122 chain 5947 chr20 63025520 + 44755942 44756025 MER96B 391 + 98 179 185716 34 1 0 40 1 0 7 chain 12530 chr20 63025520 + 44771595 44771874 L1MB7 1623 + 1000 1265 150116 37 1 0 7 21 23 115 81 66 17 chain 3207 chr20 63025520 + 44786029 44786064 MIR 256 - 147 182 220765 35 chain 10535 chr20 63025520 + 44817038 44817167 MER85 139 + 0 139 158116 90 0 10 39 chain 6742 chr20 63025520 + 44870481 44870582 MER5A1 166 - 32 144 179378 79 8 19 14 chain 3471 chr20 63025520 + 44893194 44893235 MIRb 242 - 134 175 215789 41 chain 16629 chr20 63025520 + 44918909 44919119 MER20 218 + 6 216 136584 77 1 0 4 0 1 128 chain 3458 chr20 63025520 + 45051555 45051627 MLT1N2 510 + 424 497 216027 29 3 2 9 8 0 8 0 10 15 chain 18284 chr20 63025520 + 45151561 45151884 LTR46 455 - 0 325 132117 41 10 6 20 15 22 132 16 17 10 20 18 59 chain 7064 chr20 63025520 + 45182332 45182427 MLT2B4 540 - 422 519 176997 76 1 3 18 chain 34631 chr20 63025520 + 45189614 45190063 MER4A1 472 + 0 472 76716 100 0 2 120 9 30 220 chain 3845 chr20 63025520 + 45223976 45224022 MER50 708 - 107 153 209711 46 chain 6643 chr20 63025520 + 45266364 45266443 MIR 256 - 120 199 180141 79 chain 6797 chr20 63025520 + 45267453 45267572 MER20 218 - 53 174 178976 77 2 0 5 20 24 15 chain 5153 chr20 63025520 + 45276821 45276901 MER75A 77 + 0 77 193524 12 2 1 46 2 0 18 chain 15845 chr20 63025520 + 45282004 45282204 MER107 203 + 5 203 138813 148 0 1 4 13 10 35 chain 7106 chr20 63025520 + 45284017 45284102 MSTA 426 - 60 145 176707 85 chain 18126 chr20 63025520 + 45308049 45308263 AluY 311 + 78 293 132528 45 1 0 8 0 2 160 chain 25703 chr20 63025520 + 45312954 45313316 THE1C 375 - 0 375 101274 25 1 0 39 9 12 95 0 6 6 6 8 135 0 3 46 chain 3673 chr20 63025520 + 45322769 45322812 MIR 256 + 91 134 212326 43 chain 4127 chr20 63025520 + 45351852 45351899 MLT1J 494 - 204 251 205553 47 chain 27396 chr20 63025520 + 45358268 45358568 AluYc3 301 - 0 301 94985 186 1 2 113 chain 4176 chr20 63025520 + 45369139 45369203 MLT1J 494 + 104 170 204891 21 5 7 38 chain 17513 chr20 63025520 + 45379536 45380208 MSTA 426 - 31 426 134228 78 5 25 42 377 54 48 23 48 28 5 6 66 chain 5365 chr20 63025520 + 45401230 45401298 L1MB3 1562 + 1230 1298 191365 68 chain 12598 chr20 63025520 + 45408877 45409061 MER30 238 + 41 238 149843 62 10 29 6 3 0 52 3 0 48 chain 5015 chr20 63025520 + 45439478 45439556 MADE1 96 - 0 93 194970 25 1 0 5 0 1 5 1 17 22 1 0 18 chain 4849 chr20 63025520 + 45442153 45442217 MER96B 391 - 56 118 196798 41 2 0 21 chain 2995 chr20 63025520 + 45450705 45450784 MADE1 96 + 1 96 225118 22 33 49 24 chain 58379 chr20 63025520 + 45452804 45453706 L1PA14 3548 + 2536 3440 53759 8 0 1 144 1 0 90 13 7 13 5 6 133 3 1 14 2 0 48 5 6 87 1 3 13 14 31 49 0 1 30 1 0 82 1 0 10 0 1 18 1 0 10 8 4 33 4 2 12 1 0 4 2 1 17 1 0 20 0 1 4 chain 24717 chr20 63025520 + 45496010 45496349 L1PA8 5853 - 0 333 106345 93 1 0 19 2 1 31 0 1 4 12 11 14 1 0 70 2 0 45 1 0 44 chain 2800 chr20 63025520 + 45516193 45516253 LTR8 732 - 641 701 228722 22 8 14 13 6 0 11 chain 4665 chr20 63025520 + 45531501 45531559 MER58B 340 + 269 339 198912 20 0 12 38 chain 29920 chr20 63025520 + 45541319 45541638 AluYb8 318 - 1 318 85046 5 2 0 312 chain 3888 chr20 63025520 + 45541710 45541761 MER63A 208 - 53 104 209053 51 chain 17880 chr20 63025520 + 45556106 45556406 THE1B 368 - 62 368 133161 66 5 12 14 34 30 6 0 2 58 14 15 103 chain 3477 chr20 63025520 + 45564629 45564672 Tigger4a 237 - 191 234 215708 43 chain 17026 chr20 63025520 + 45609430 45609651 L1MA4 2864 - 194 414 135519 171 3 4 8 2 0 37 chain 5117 chr20 63025520 + 45625902 45625988 MSTA 426 - 312 381 193889 9 17 0 60 chain 11168 chr20 63025520 + 45639126 45639277 AluJb 308 + 139 292 155559 14 8 10 129 chain 27203 chr20 63025520 + 45693514 45693877 THE1B 368 - 0 368 95583 31 0 1 94 1 0 12 1 0 16 1 5 9 0 1 4 3 5 21 1 0 169 chain 31889 chr20 63025520 + 45704645 45705189 L1PA15 4387 - 32 556 81028 25 2 0 15 3 1 43 18 15 39 1 0 9 4 0 23 2 1 43 23 16 21 8 7 161 19 22 22 3 1 60 chain 15609 chr20 63025520 + 45751996 45752283 LTR62 707 - 0 263 139553 110 23 0 29 50 49 75 chain 3507 chr20 63025520 + 45759772 45759815 MER20B 722 - 505 548 215254 43 chain 32096 chr20 63025520 + 45766436 45766787 L1PA3long 6157 + 5805 6156 80700 351 chain 45573 chr20 63025520 + 45828569 45829119 LTR6B 557 + 0 547 62437 48 2 0 219 4 0 133 0 2 102 0 2 16 1 0 25 chain 20275 chr20 63025520 + 45831959 45832319 THE1D 372 + 0 372 126296 90 28 27 18 0 4 17 60 69 147 chain 6658 chr20 63025520 + 45849551 45849725 MER3 215 - 19 201 180017 22 10 26 16 10 0 44 43 45 29 chain 26153 chr20 63025520 + 45930530 45930890 THE1C 375 + 0 364 99395 138 1 5 40 1 0 37 0 3 22 8 7 97 1 0 15 chain 6121 chr20 63025520 + 45931222 45931333 Tigger4b 360 + 237 358 184266 56 15 21 19 4 8 17 chain 5272 chr20 63025520 + 45935755 45935894 MLT1A0 366 + 0 148 192308 45 61 70 33 chain 4409 chr20 63025520 + 45951700 45951844 MIR 256 + 24 183 201813 15 32 33 46 35 49 16 chain 3727 chr20 63025520 + 45970962 45971008 L1MC3 1789 + 1094 1141 211514 42 0 1 4 chain 4691 chr20 63025520 + 46000075 46000151 MER53 195 + 15 90 198620 52 9 8 15 chain 23478 chr20 63025520 + 46016068 46016347 AluY 311 + 25 311 113224 107 0 1 143 0 6 29 chain 30336 chr20 63025520 + 46019069 46019386 AluYb8 318 - 1 318 83825 317 chain 4229 chr20 63025520 + 46063451 46063540 MER58A 224 - 133 224 204189 42 1 0 6 25 28 15 chain 3865 chr20 63025520 + 46072872 46072931 L1MC2 1988 + 1000 1054 209371 9 4 0 12 1 0 33 chain 3608 chr20 63025520 + 46106429 46106470 MER4D1 891 + 824 865 213515 41 chain 23251 chr20 63025520 + 46128824 46129133 AluSp 311 - 5 311 114439 6 2 0 5 2 0 81 8 9 205 chain 35028 chr20 63025520 + 46150042 46150524 LTR10F 562 - 8 562 76150 54 4 2 32 5 6 4 1 0 201 5 36 11 8 47 124 0 4 33 chain 11703 chr20 63025520 + 46152524 46152668 HUERS-P3b-int 2065 - 34 181 153457 61 0 4 25 1 0 57 chain 163232 chr20 63025520 + 46153678 46155552 SVA_D 2077 - 0 2076 22919 632 1 0 44 9 8 4 0 1 31 1 0 10 1 0 39 0 1 8 16 44 42 1 0 132 0 51 39 0 83 145 0 40 695 0 3 6 1 0 5 0 1 12 chain 97510 chr20 63025520 + 46182146 46183218 L1PA4 6152 - 3 1076 37421 146 1 0 11 0 1 894 0 1 20 chain 6682 chr20 63025520 + 46183218 46183312 L1P1 4361 + 4248 4341 177197 22 0 1 34 1 0 23 2 1 12 chain 7159 chr20 63025520 + 46201182 46201274 Tigger1 2417 - 1835 1934 176348 17 0 4 30 0 4 4 1 0 40 chain 2913 chr20 63025520 + 46216332 46216366 MER2 342 - 125 159 226811 34 chain 27396 chr20 63025520 + 46251354 46251757 LTR7B 505 - 0 505 94983 33 0 4 14 14 13 79 1 0 12 0 1 25 0 1 43 0 2 26 3 27 12 0 38 7 1 0 20 0 2 31 0 10 61 0 23 21 chain 3870 chr20 63025520 + 46324715 46324787 MER58B 340 - 221 292 209317 13 17 16 42 chain 8131 chr20 63025520 + 46367594 46367943 MLT1C 463 + 88 428 170324 17 42 23 12 1 0 4 75 82 36 83 88 37 1 0 41 chain 28854 chr20 63025520 + 46375400 46375737 L1PA5 6144 + 5805 6144 89651 321 2 4 14 chain 21646 chr20 63025520 + 46390544 46390902 THE1B 368 + 0 368 121589 108 7 9 52 1 0 6 0 3 6 55 59 56 0 2 67 chain 35944 chr20 63025520 + 46432943 46433511 LTR9B 643 + 5 613 74964 67 1 3 13 12 23 69 6 28 12 12 13 110 2 1 69 40 38 49 0 7 106 chain 4263 chr20 63025520 + 46444547 46444599 MIR 256 - 142 193 203710 15 1 0 36 chain 13475 chr20 63025520 + 46498470 46498681 MER30 238 - 10 238 146435 38 3 0 50 17 32 28 5 10 70 chain 3607 chr20 63025520 + 46515176 46515216 MLT1H2 457 + 77 117 213532 40 chain 3901 chr20 63025520 + 46533091 46533136 U7 62 + 0 45 208822 45 chain 23964 chr20 63025520 + 46548747 46549118 THE1D 372 - 0 372 110548 133 0 1 14 63 63 161 chain 19247 chr20 63025520 + 46615537 46615760 L1PA5 6144 - 0 224 129386 33 0 1 190 chain 24044 chr20 63025520 + 46626855 46627137 AluY 311 + 4 287 110087 128 0 1 154 chain 22966 chr20 63025520 + 46638555 46638954 MSTA 426 - 0 426 115776 30 8 4 153 29 32 4 1 0 35 39 68 100 chain 3063 chr20 63025520 + 46663677 46663740 MLT1I 406 - 228 278 223757 10 0 1 26 12 0 7 2 0 6 chain 19150 chr20 63025520 + 46679270 46679643 Tigger2a 444 - 0 387 129682 33 108 110 68 0 3 116 3 0 15 0 12 30 chain 4702 chr20 63025520 + 46688100 46688156 LTR12C 1709 + 1019 1075 198507 56 chain 4680 chr20 63025520 + 46688173 46688231 LTR12C 1709 + 691 749 198761 58 chain 20072 chr20 63025520 + 46691626 46691981 THE1B 368 + 0 368 126911 47 67 76 46 1 0 28 0 3 14 0 4 14 13 11 125 chain 10464 chr20 63025520 + 46696328 46696483 MER30 238 - 16 177 158415 18 5 8 80 8 11 44 chain 40330 chr20 63025520 + 46696489 46696929 L1PA2 6032 + 5574 6022 68833 254 0 8 186 chain 17288 chr20 63025520 + 46702984 46703209 L1PA7 6471 - 6 229 134810 6 2 0 137 1 2 11 1 0 67 chain 37442 chr20 63025520 + 46703383 46704090 L1PB1 5432 - 41 641 72901 21 1 0 21 5 3 15 1 0 4 2 0 18 26 13 16 1 0 44 1 0 15 2 1 47 7 5 9 2 0 3 2 0 10 1 0 12 1 0 15 0 3 5 71 0 5 0 3 197 23 8 76 0 3 28 chain 25173 chr20 63025520 + 46705852 46706170 HERVL-int 5654 - 5311 5654 103897 114 0 1 49 0 24 155 chain 3846 chr20 63025520 + 46726918 46726984 MLT1J 494 + 95 162 209693 20 11 12 35 chain 20599 chr20 63025520 + 46743860 46744200 THE1D 372 + 2 360 125300 100 5 6 52 0 1 8 52 69 102 1 0 20 chain 10354 chr20 63025520 + 46771948 46772157 MER20 218 - 10 217 158886 31 9 12 5 1 0 72 0 1 5 7 4 9 1 0 6 2 0 26 22 23 13 chain 42123 chr20 63025520 + 46773959 46774496 MLT2A2 560 - 2 560 66477 66 2 3 72 0 11 62 0 7 157 1 0 163 0 3 14 chain 45564 chr20 63025520 + 46785860 46786488 MER41B 635 + 0 633 62445 9 0 4 8 5 6 101 0 1 54 0 10 12 22 12 244 8 7 165 chain 21617 chr20 63025520 + 46899953 46900331 MSTA 426 - 2 414 121702 90 0 1 16 3 24 56 36 36 42 41 53 94 chain 40089 chr20 63025520 + 46905707 46906258 MER41A 554 - 0 554 69200 145 15 19 246 23 21 30 5 6 87 chain 15666 chr20 63025520 + 46922212 46922404 MER2 342 + 144 336 139375 192 chain 4131 chr20 63025520 + 47007531 47007610 MADE1 96 + 0 96 205476 23 17 34 39 chain 22740 chr20 63025520 + 47020873 47021188 LOR1a 498 - 160 490 116870 62 0 10 31 8 13 19 4 2 119 1 3 71 chain 38533 chr20 63025520 + 47024367 47024873 LTR10D 510 + 0 510 71390 66 13 21 8 0 1 15 4 0 109 1 0 42 1 0 117 1 2 129 chain 11500 chr20 63025520 + 47027015 47027567 MER52C 1267 - 616 1192 154304 56 1 0 6 204 403 70 174 0 41 chain 3276 chr20 63025520 + 47036358 47036397 MER20B 722 - 109 148 219431 39 chain 6048 chr20 63025520 + 47041820 47041907 LTR16C 481 + 301 425 184828 21 5 42 61 chain 40752 chr20 63025520 + 47060888 47061478 MER41A 554 - 0 539 68234 162 3 9 255 6 10 25 67 6 72 chain 26025 chr20 63025520 + 47079315 47079609 AluYf4 310 - 17 310 99924 167 1 0 126 chain 21325 chr20 63025520 + 47179993 47180560 LTR12C 1709 - 145 938 122775 24 1 0 40 225 463 18 2 42 26 50 0 114 1 0 66 chain 394420 chr20 63025520 + 47203651 47208129 L1PA4 6152 + 1 6151 10307 579 1 0 118 7 0 136 17 0 402 1 0 324 0 1 102 0 1690 335 0 2 1588 0 4 442 0 1 426 chain 5658 chr20 63025520 + 47227613 47227745 MER58A 224 - 34 178 188495 16 52 64 64 chain 5552 chr20 63025520 + 47295574 47295694 MIR 256 - 109 231 189545 20 0 3 8 3 0 25 1 0 19 31 34 13 chain 3016 chr20 63025520 + 47315434 47315467 MIR 256 - 122 155 224682 33 chain 23077 chr20 63025520 + 47329392 47329693 AluSg 306 + 11 295 115259 218 18 1 65 chain 6974 chr20 63025520 + 47330311 47330398 L1PA8 5853 + 5761 5847 177656 82 1 0 4 chain 26026 chr20 63025520 + 47373302 47373661 THE1B 368 - 0 368 99916 56 1 6 66 18 16 6 0 4 14 0 3 28 1 0 169 chain 26325 chr20 63025520 + 47392101 47392452 THE1B 368 + 0 368 98719 41 1 16 41 0 3 73 4 3 191 chain 2644 chr20 63025520 + 47394549 47394594 MER102c 337 - 78 124 231110 26 7 8 12 chain 23288 chr20 63025520 + 47408730 47409016 AluSp 311 + 0 291 114266 48 4 9 234 chain 30871 chr20 63025520 + 47486094 47486559 L1PA8 5853 + 5407 5853 82731 157 1 0 44 2 0 52 0 1 14 32 28 5 0 2 30 2 1 19 2 1 85 13 0 7 chain 2851 chr20 63025520 + 47489797 47489829 MLT1H2 457 - 335 367 227848 32 chain 4691 chr20 63025520 + 47495283 47495620 MLT1K 546 + 139 463 198622 16 10 0 9 17 19 27 207 200 30 8 10 13 chain 23891 chr20 63025520 + 47504565 47504916 THE1A 353 - 0 353 110954 8 0 3 7 3 0 7 0 3 6 0 2 59 4 3 11 11 10 4 0 1 34 1 0 85 1 0 110 chain 5232 chr20 63025520 + 47509934 47510126 MLT1K 546 - 0 188 192707 37 32 30 34 62 62 4 1 0 8 1 0 13 chain 17404 chr20 63025520 + 47512728 47512936 L1PA6 6164 + 5951 6160 134491 201 0 1 7 chain 18964 chr20 63025520 + 47550892 47551626 L1PA8 5853 - 6 732 49677 87 1 0 19 2 1 29 1 0 22 1 0 10 1 0 71 2 0 44 1 0 443 chain 87262 chr20 63025520 + 47551634 47552615 SVA_D 2077 - 3 983 40664 673 9 8 4 0 1 158 1 0 136 chain 33708 chr20 63025520 + 47552676 47553061 SVA_F 1814 - 698 1100 78087 125 0 2 23 3 18 18 1 0 49 0 1 166 chain 2816 chr20 63025520 + 47553373 47553482 L1PA8 5853 - 732 841 49677 109 chain 521908 chr20 63025520 + 47593523 47599666 L1PA6 6164 - 6 6164 4970 153 10 8 68 6 8 98 2 3 969 5 8 74 0 5 299 3 0 424 1 0 765 3 1 51 2 1 32 3 1 856 0 1 105 0 2 54 2 1 6 0 1 1025 0 1 181 3 0 9 0 3 20 0 1 270 0 4 39 1 6 397 13 13 130 0 1 64 chain 23466 chr20 63025520 + 47660871 47661152 AluSp 311 - 16 301 113284 207 0 4 74 chain 21148 chr20 63025520 + 47688258 47688522 AluY 311 + 11 300 123376 42 0 30 40 10 5 172 chain 24414 chr20 63025520 + 47692722 47693012 AluSp 311 - 10 301 108007 159 0 1 131 chain 20714 chr20 63025520 + 47709098 47709361 L1PA6 6164 + 5914 6162 124918 107 15 0 141 chain 29602 chr20 63025520 + 47724678 47725007 AluYb8 318 + 0 317 86205 145 12 0 172 chain 21031 chr20 63025520 + 47789712 47789985 AluSp 311 + 0 279 123806 219 11 17 43 chain 26339 chr20 63025520 + 47792335 47792629 AluYf4 310 - 14 309 98660 85 4 5 205 chain 28133 chr20 63025520 + 47812691 47813000 AluYf4 310 + 0 309 92533 309 chain 28986 chr20 63025520 + 47843394 47843698 AluYa5 310 - 6 310 89058 304 chain 44171 chr20 63025520 + 47885029 47885765 L1PA15 4387 + 3642 4366 63985 149 7 36 63 2 0 17 1 0 14 6 0 11 1 0 67 11 0 105 1 0 26 1 0 37 5 4 14 1 0 23 4 0 9 2 1 38 17 14 21 0 2 6 2 0 15 21 14 28 1 0 10 chain 73740 chr20 63025520 + 47909866 47910894 MER11C 1089 + 0 1063 46652 172 0 9 66 0 9 50 0 2 5 2 4 69 1 0 59 1 3 85 46 45 101 0 13 7 1 0 38 0 1 124 1 2 48 1 0 4 1 0 121 0 1 25 chain 8990 chr20 63025520 + 47967617 47967880 L1PB1 5432 - 2 232 165657 8 2 0 18 1 0 10 0 8 16 8 7 17 91 54 11 1 0 45 1 0 15 3 5 16 chain 3461 chr20 63025520 + 48011493 48011546 MIRb 242 + 92 140 215981 4 0 1 37 6 0 6 chain 3238 chr20 63025520 + 48068362 48068396 MIRb 242 - 108 142 220271 34 chain 23024 chr20 63025520 + 48071180 48071481 AluSz6 309 + 0 296 115517 133 13 10 52 2 0 101 chain 23933 chr20 63025520 + 48147301 48147587 AluSc 308 - 18 300 110724 5 3 0 167 1 0 110 chain 6298 chr20 63025520 + 48174153 48174581 MER4C 627 + 3 627 182813 15 44 46 4 1 0 13 1 0 35 257 385 10 0 68 48 chain 24982 chr20 63025520 + 48176463 48176758 AluSg7 307 - 11 307 104899 186 1 2 108 chain 25207 chr20 63025520 + 48215270 48215576 AluSg7 307 - 0 307 103703 155 0 3 7 3 0 10 0 1 131 chain 7992 chr20 63025520 + 48269608 48269852 Tigger4a 237 - 0 237 171111 15 1 0 48 2 3 35 111 105 4 1 0 27 chain 5791 chr20 63025520 + 48297337 48297400 MER41B 635 - 85 148 187251 63 chain 15670 chr20 63025520 + 48349790 48350026 LTR24C 604 - 179 427 139366 50 4 25 18 13 7 32 2 0 3 1 0 113 chain 16204 chr20 63025520 + 48350578 48350768 MER4A1 472 - 282 472 137740 190 chain 6511 chr20 63025520 + 48354908 48354990 MLT1A0-int 1658 - 0 83 181158 4 0 1 78 chain 13324 chr20 63025520 + 48376705 48376908 MER4D 903 + 0 194 146990 75 1 0 53 21 13 53 chain 41252 chr20 63025520 + 48382189 48382727 MER41A 554 - 11 552 67595 112 0 1 111 0 1 225 18 19 72 chain 21595 chr20 63025520 + 48419420 48419721 AluSq2 311 + 8 305 121789 182 1 0 6 15 24 78 12 0 7 chain 9587 chr20 63025520 + 48430072 48430203 MER85 139 + 7 139 162657 87 16 17 28 chain 12889 chr20 63025520 + 48469393 48469551 MER4A1 472 - 26 186 148677 53 0 2 105 chain 4605 chr20 63025520 + 48532646 48532703 MIRc 230 + 60 116 199568 52 1 0 4 chain 154657 chr20 63025520 + 48537952 48539655 SVA_D 2077 + 0 2061 24022 725 0 3 33 3 0 123 0 310 163 0 49 39 1 0 616 chain 7521 chr20 63025520 + 48546604 48546696 MER81 114 + 22 114 174031 92 chain 7067 chr20 63025520 + 48556831 48556938 U13 108 - 2 108 176961 17 10 9 80 chain 29187 chr20 63025520 + 48564316 48564626 AluYg6 310 - 0 310 88110 310 chain 26861 chr20 63025520 + 48574683 48574980 AluYk4 311 - 14 311 96769 297 chain 6210 chr20 63025520 + 48575372 48575444 MER65A 464 + 104 177 183504 50 0 1 22 chain 23604 chr20 63025520 + 48582653 48582951 AluSc 308 + 4 301 112555 187 1 0 67 1 0 14 0 1 28 chain 3289 chr20 63025520 + 48586873 48586909 MIRc 230 + 97 133 219186 36 chain 22898 chr20 63025520 + 48638670 48638922 AluY 311 + 58 311 116117 74 0 1 178 chain 3213 chr20 63025520 + 48639479 48639516 MER53 195 + 30 67 220691 37 chain 30194 chr20 63025520 + 48772777 48773091 AluYb8 318 - 4 318 84215 314 chain 24769 chr20 63025520 + 48773094 48773377 AluSc 308 - 15 298 106063 283 chain 29128 chr20 63025520 + 48799240 48799578 L1PA4 6152 - 11 348 88414 243 2 0 76 0 1 17 chain 26022 chr20 63025520 + 48799857 48800152 AluYc 301 + 0 300 99932 120 0 2 57 0 3 118 chain 25125 chr20 63025520 + 48847042 48847333 AluSp 311 - 8 299 104151 291 chain 5562 chr20 63025520 + 48878527 48878612 L1MB5 1630 - 17 100 189455 12 2 1 51 1 0 19 chain 21188 chr20 63025520 + 48978893 48979127 L1PA4 6152 - 308 542 123249 234 chain 26728 chr20 63025520 + 48979127 48979444 L1PA4 6152 + 5834 6152 97229 143 3 4 171 chain 4205 chr20 63025520 + 49041197 49041248 MER53 195 + 143 194 204471 51 chain 5166 chr20 63025520 + 49051131 49051273 MER58A 224 - 11 176 193392 36 40 59 14 17 21 35 chain 28730 chr20 63025520 + 49054462 49055134 MER41A 554 + 92 459 90208 88 9 10 190 306 0 79 chain 5026 chr20 63025520 + 49070099 49070153 MIRc 230 + 70 124 194865 54 chain 25777 chr20 63025520 + 49074740 49075033 AluY 311 + 2 298 100975 185 0 3 108 chain 22033 chr20 63025520 + 49089079 49089352 AluSp 311 + 11 294 120094 12 0 9 249 0 1 12 chain 24326 chr20 63025520 + 49094314 49094607 AluSp 311 + 12 299 108513 192 6 0 95 chain 24172 chr20 63025520 + 49156599 49156880 AluSp 311 - 19 300 109366 160 2 0 66 0 2 53 chain 8136 chr20 63025520 + 49179545 49179643 HY3 101 + 0 98 170301 98 chain 32328 chr20 63025520 + 49264987 49265461 MER1A 529 - 0 483 80304 64 19 14 51 4 7 38 4 0 71 0 1 129 11 25 83 chain 3732 chr20 63025520 + 49280770 49280816 MADE1 96 + 50 96 211426 46 chain 20740 chr20 63025520 + 49296023 49296284 AluSc8 310 + 11 263 124820 123 10 1 128 chain 24758 chr20 63025520 + 49323247 49323546 AluY 311 + 14 307 106120 178 7 1 114 chain 25502 chr20 63025520 + 49372186 49372485 AluY 311 + 1 294 102213 122 7 1 170 chain 27147 chr20 63025520 + 49394647 49394949 AluYa5 310 - 5 304 95770 179 3 0 120 chain 4077 chr20 63025520 + 49397642 49397689 L1MB8 1703 + 1435 1482 206230 47 chain 3189 chr20 63025520 + 49398282 49398317 MER5A1 166 + 100 135 221146 35 chain 24362 chr20 63025520 + 49399474 49399761 AluSq2 311 + 20 305 108309 114 2 0 171 chain 7652 chr20 63025520 + 49402028 49402125 MER57B1 401 - 302 401 173216 12 0 2 85 chain 24148 chr20 63025520 + 49405847 49406124 AluSq10 312 - 24 301 109484 277 chain 3357 chr20 63025520 + 49406779 49406818 MIR 256 + 192 231 217911 39 chain 25045 chr20 63025520 + 49414205 49414490 AluSp 311 - 15 300 104569 285 chain 135091 chr20 63025520 + 49424063 49426662 L1PB1 5432 - 10 1980 26996 18 1 0 13 1 0 11 4 0 10 1 0 10 45 37 15 16 6 6 2 0 16 1 0 44 1 0 15 2 1 52 2 0 8 8 4 12 1 0 6 1 0 24 349 17 114 1 13 99 29 0 26 0 1 222 0 1 6 4 22 118 0 4 326 0 1 31 312 39 349 0 4 65 4 5 19 3 2 103 8 10 65 chain 24147 chr20 63025520 + 49473677 49473957 AluSp 311 - 21 301 109486 280 chain 20723 chr20 63025520 + 49511159 49511440 AluSq2 311 + 10 292 124885 124 9 8 33 1 0 64 0 1 37 1 3 12 chain 3383 chr20 63025520 + 49592864 49592947 MER74A 558 - 0 82 217427 29 6 9 5 3 0 16 9 8 15 chain 32967 chr20 63025520 + 49660335 49661166 Tigger3c 601 + 34 579 79266 79 30 35 142 1 0 5 330 24 26 14 28 145 0 2 59 chain 26251 chr20 63025520 + 49696288 49696656 THE1C 375 + 0 375 99018 107 23 27 65 6 9 70 0 1 71 1 0 25 chain 20561 chr20 63025520 + 49710523 49710823 AluSg4 309 + 9 297 125430 39 1 0 83 22 9 129 6 8 20 chain 20380 chr20 63025520 + 49722907 49723267 THE1B 368 - 1 368 125963 55 7 6 63 11 19 6 0 4 10 41 35 52 8 9 65 0 1 42 chain 3402 chr20 63025520 + 49738464 49738503 MamRep38 296 - 162 201 217054 39 chain 24821 chr20 63025520 + 49753602 49753884 AluSc5 308 - 17 299 105768 282 chain 22261 chr20 63025520 + 49765064 49765353 AluSp 311 - 12 300 119063 135 0 1 21 12 10 121 chain 3289 chr20 63025520 + 49779243 49779279 MIR 256 + 105 141 219181 36 chain 28979 chr20 63025520 + 49827093 49827462 THE1C 375 + 2 374 89095 184 2 0 40 0 5 47 0 1 69 1 0 26 chain 27274 chr20 63025520 + 49834462 49834790 HERVL-int 5654 + 4704 5033 95359 11 0 1 317 chain 45933 chr20 63025520 + 49842228 49843144 MER51A 677 - 0 677 62099 64 1 0 61 20 21 120 0 4 144 15 5 58 10 0 18 262 38 42 0 1 101 chain 29960 chr20 63025520 + 49851137 49851575 L1PA8 5853 - 6 440 84935 84 8 7 15 2 1 52 1 0 9 9 8 10 0 2 48 3 1 46 1 0 28 0 1 122 chain 53002 chr20 63025520 + 49854594 49855247 PABL_A 660 - 1 658 57015 599 0 4 54 chain 8252 chr20 63025520 + 49862974 49863185 MLT1A 405 + 214 404 169670 21 81 59 86 7 8 16 chain 36512 chr20 63025520 + 49877994 49878467 LTR2B 499 - 0 490 74224 264 1 0 6 0 1 85 0 12 13 0 7 46 1 0 51 1 0 5 chain 19537 chr20 63025520 + 49880361 49880730 THE1B 368 - 0 368 128550 25 37 37 20 0 2 35 8 7 12 1 0 16 16 24 21 1 0 55 0 1 44 15 6 63 chain 2847 chr20 63025520 + 49882496 49882526 MIR 256 - 123 153 227879 30 chain 3468 chr20 63025520 + 49902853 49902924 MER102c 337 + 237 305 215844 34 21 18 16 chain 7860 chr20 63025520 + 49907220 49907323 MER30 238 - 6 106 171938 42 3 0 58 chain 39871 chr20 63025520 + 49916848 49917345 LTR19A 502 - 0 502 69505 15 0 4 139 0 1 32 0 2 5 1 0 75 1 2 161 3 1 65 chain 28434 chr20 63025520 + 49918638 49918955 L1PA4 6152 + 5834 6151 91451 317 chain 8492 chr20 63025520 + 49922073 49922214 MER4A 717 - 546 695 168338 48 25 33 68 chain 4469 chr20 63025520 + 49928813 49928871 MSTA 426 + 368 426 201125 58 chain 9261 chr20 63025520 + 49935477 49935580 AluSc5 308 - 12 115 164257 103 chain 45441 chr20 63025520 + 49955052 49955717 MER41B 635 - 7 635 62555 10 0 1 105 0 1 41 2 1 69 23 24 178 28 0 69 12 1 128 chain 6877 chr20 63025520 + 49958945 49959068 MER30 238 + 125 236 178380 7 9 0 67 13 10 27 chain 4420 chr20 63025520 + 49981758 49981811 MIR 256 - 145 198 201688 53 chain 3322 chr20 63025520 + 49994218 49994402 MLT1C 463 + 210 409 218532 36 132 147 16 chain 3015 chr20 63025520 + 50009802 50009836 MIR 256 + 99 133 224722 34 chain 4994 chr20 63025520 + 50172479 50172540 MLT1C 463 + 63 124 195209 61 chain 27773 chr20 63025520 + 50185048 50185403 THE1B 368 + 0 368 93788 40 0 15 110 8 7 121 1 0 75 chain 27685 chr20 63025520 + 50188539 50188883 THE1C 375 - 29 375 94100 49 1 0 18 0 1 210 0 2 66 chain 11777 chr20 63025520 + 50189706 50189836 L1PA3long 6157 + 6027 6157 153148 130 chain 13893 chr20 63025520 + 50252545 50252932 MER44B 551 - 75 512 144946 111 199 249 77 chain 8498 chr20 63025520 + 50254668 50254772 L1PB1 5432 - 332 436 168303 104 chain 24180 chr20 63025520 + 50258072 50258396 AluSq2 311 + 1 307 109320 124 30 15 161 3 0 6 chain 25135 chr20 63025520 + 50280060 50280351 AluY 311 + 9 301 104091 123 0 1 168 chain 65577 chr20 63025520 + 50302138 50302914 L1PA5 6144 + 5365 6144 50305 9 0 2 618 0 1 149 chain 3690 chr20 63025520 + 50330052 50330098 MIR 256 - 127 172 212076 36 1 0 9 chain 104675 chr20 63025520 + 50338367 50339928 L1PB1 5432 + 3955 5420 35572 260 1 0 90 1 0 321 3 0 250 0 4 61 0 1 24 0 1 47 116 53 36 1 2 9 3 0 24 1 0 9 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 6 40 26 4 1 0 14 2 0 24 1 0 21 1 0 9 5 4 16 chain 12062 chr20 63025520 + 50372612 50372760 MLT1B 390 - 4 152 151937 148 chain 4057 chr20 63025520 + 50394506 50394750 Tigger1 2417 - 730 974 119210 142 0 3 52 0 7 13 3 0 18 7 0 9 chain 44925 chr20 63025520 + 50394750 50395277 MER41A 554 + 2 534 63144 466 0 5 61 chain 1979 chr20 63025520 + 50395724 50395843 Tigger1 2417 - 1081 1190 119210 18 3 0 4 0 1 14 8 0 72 chain 11362 chr20 63025520 + 50433223 50433436 MER47A 366 - 75 296 154851 30 23 28 107 32 35 21 chain 22952 chr20 63025520 + 50443218 50443501 AluSp 311 + 16 298 115842 39 0 1 186 2 0 56 chain 22559 chr20 63025520 + 50467506 50467786 AluSp 311 + 0 304 117767 51 0 6 50 0 18 10 2 1 5 0 1 162 chain 8707 chr20 63025520 + 50474141 50474259 L1MB5 1630 + 625 739 167155 94 4 0 20 chain 20631 chr20 63025520 + 50479004 50479277 AluSp 311 + 8 311 125186 81 7 0 48 13 50 124 chain 3181 chr20 63025520 + 50481987 50482025 MER5B 177 + 125 163 221287 38 chain 26182 chr20 63025520 + 50494038 50494341 AluSp 311 + 11 311 99272 121 3 0 179 chain 3156 chr20 63025520 + 50503368 50503401 MER3 215 + 53 86 221800 33 chain 14759 chr20 63025520 + 50511115 50511341 MER1B 344 - 8 236 142070 50 15 19 5 2 0 128 6 6 20 chain 5196 chr20 63025520 + 50521508 50521569 U7 62 + 1 62 193070 61 chain 2957 chr20 63025520 + 50526375 50526410 L1MD3 1191 + 1015 1050 225922 35 chain 24315 chr20 63025520 + 50538115 50538412 AluSc 308 - 13 307 108576 38 1 0 129 1 0 5 1 0 122 chain 3854 chr20 63025520 + 50567503 50567549 MADE1 96 - 50 96 209571 46 chain 28495 chr20 63025520 + 50583858 50584160 AluYf4 310 - 8 310 91204 302 chain 23970 chr20 63025520 + 50585991 50586308 AluSp 311 + 0 311 110507 63 0 4 213 11 1 30 chain 30687 chr20 63025520 + 50594646 50595061 MER61E 571 + 0 389 83058 133 27 0 72 0 1 183 chain 6634 chr20 63025520 + 50596488 50596638 MER2 342 - 0 149 180206 22 54 53 74 chain 23903 chr20 63025520 + 50617392 50617687 AluSp 311 + 10 296 110895 110 9 0 176 chain 4010 chr20 63025520 + 50623462 50623527 MER96B 391 + 46 110 207240 13 6 5 46 chain 5229 chr20 63025520 + 50643613 50643685 L1MB1 2102 + 1860 1931 192732 12 2 1 58 chain 24774 chr20 63025520 + 50650274 50650618 THE1B 368 + 0 368 106035 44 0 15 82 0 4 41 5 9 88 8 9 76 chain 23793 chr20 63025520 + 50667453 50667735 AluSp 311 + 0 280 111512 125 2 0 155 chain 7765 chr20 63025520 + 50685653 50685747 FAM 185 + 42 136 172505 94 chain 24587 chr20 63025520 + 50708244 50708550 AluSp 311 + 0 297 107050 132 3 0 159 6 0 6 chain 9885 chr20 63025520 + 50722001 50722119 MER5A1 166 + 44 162 161157 118 chain 7447 chr20 63025520 + 50722192 50722301 MER5A1 166 - 12 122 174461 13 10 11 86 chain 3297 chr20 63025520 + 50730853 50730890 MER5A1 166 - 32 69 219054 37 chain 24255 chr20 63025520 + 50738778 50739065 AluY 311 + 15 305 108910 117 0 1 133 1 3 36 chain 25761 chr20 63025520 + 50739848 50740200 Tigger1 2417 + 1950 2302 101039 100 5 4 61 1 4 137 2 0 46 chain 20113 chr20 63025520 + 50747859 50748154 L1M1 2793 + 2312 2612 126787 26 0 3 31 2 0 45 17 16 51 1 5 33 0 1 89 chain 50591 chr20 63025520 + 50762714 50763270 L1PA3long 6157 + 5592 6149 58588 48 1 2 507 chain 41512 chr20 63025520 + 50774209 50774685 L1PA7 6471 - 2 476 67265 10 3 0 81 0 1 382 chain 28979 chr20 63025520 + 50793044 50793347 AluYb8 318 - 15 318 89096 303 chain 16450 chr20 63025520 + 50810198 50810407 L1PA8 5853 - 7 213 137065 86 1 0 19 2 1 52 1 0 9 1 0 20 0 1 18 chain 47672 chr20 63025520 + 50825574 50826212 LTR9B 643 - 0 643 60717 47 0 1 155 10 11 83 5 6 114 1 2 14 10 9 97 2 4 100 chain 4934 chr20 63025520 + 50830707 50830790 LTR37A 408 - 240 324 195888 13 2 1 39 4 6 25 chain 22625 chr20 63025520 + 50836710 50837070 THE1D 372 - 0 357 117458 30 3 2 106 0 6 15 11 27 7 14 0 4 1 0 116 12 3 41 chain 102170 chr20 63025520 + 50837088 50838493 THE1D-int 1627 - 6 1613 36218 28 0 3 13 2 1 32 5 23 5 3 0 72 1 0 4 10 11 127 6 69 38 11 8 270 0 3 117 0 1 13 0 6 6 0 9 80 6 7 155 12 15 53 5 107 331 chain 3059 chr20 63025520 + 50839809 50839847 MER5A1 166 - 96 134 223837 38 chain 14098 chr20 63025520 + 50874593 50874785 MSTA 426 + 0 199 144227 8 6 0 131 0 9 30 0 4 17 chain 27463 chr20 63025520 + 50879317 50879680 THE1B 368 - 0 365 94771 94 7 8 90 1 0 111 0 2 60 chain 9797 chr20 63025520 + 50888706 50888820 L1PA16 3655 + 3464 3578 161612 114 chain 12812 chr20 63025520 + 50916166 50916324 FAM 185 + 4 162 149004 158 chain 21420 chr20 63025520 + 50916409 50916685 L1PA8 5853 + 5583 5853 122444 25 2 0 71 1 0 9 1 0 52 2 1 19 1 0 93 chain 43200 chr20 63025520 + 50918598 50919151 MER41A 554 + 0 554 65172 84 11 12 458 chain 9528 chr20 63025520 + 50931263 50931370 L1PA5 6144 - 7 114 162937 107 chain 27274 chr20 63025520 + 50951820 50952169 THE1B 368 - 12 368 95356 156 6 0 26 4 2 113 0 15 44 chain 4269 chr20 63025520 + 50960509 50960662 MER58A 224 + 58 206 203637 27 13 14 14 66 60 33 chain 2478 chr20 63025520 + 50989274 50989790 L2a 937 + 304 758 233334 25 162 162 15 270 221 7 13 0 24 chain 30549 chr20 63025520 + 51002834 51003291 MER1A 529 + 0 524 83342 25 15 14 97 16 88 219 21 17 64 chain 43362 chr20 63025520 + 51015202 51015910 L1PB1 5432 + 4747 5427 64978 50 0 9 9 8 1 287 1 2 8 4 1 26 4 6 12 5 1 8 2 0 53 2 1 15 1 0 45 1 0 15 1 0 6 16 6 19 7 4 15 2 0 14 11 10 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 3229 chr20 63025520 + 51044442 51044476 MLT1H 522 + 136 170 220436 34 chain 9553 chr20 63025520 + 51054453 51054578 MER85 139 - 1 134 162817 28 6 14 91 chain 2964 chr20 63025520 + 51068927 51069005 MER5A1 166 + 84 161 225832 32 33 32 13 chain 20140 chr20 63025520 + 51069555 51069937 THE1D 372 + 0 372 126711 61 8 7 7 19 0 25 3 5 60 0 6 7 61 63 131 chain 19224 chr20 63025520 + 51076189 51076428 L1PA16 3655 + 3221 3459 129458 70 2 0 132 0 1 35 chain 7050 chr20 63025520 + 51076654 51076763 MER63A 208 + 78 207 177115 76 12 32 21 chain 31977 chr20 63025520 + 51084102 51084570 L1PA8 5853 - 0 474 80891 83 11 10 19 2 1 61 2 1 5 0 6 45 2 1 11 6 10 36 2 1 141 0 1 42 chain 19674 chr20 63025520 + 51098888 51099211 THE1B 368 - 20 368 128185 99 40 51 30 15 14 99 0 15 40 chain 6917 chr20 63025520 + 51103645 51103798 Tigger3a 397 + 158 311 178069 35 58 58 60 chain 59738 chr20 63025520 + 51107780 51108512 L1PA7 6471 + 5746 6462 52969 39 21 5 303 0 1 42 0 1 186 0 1 4 1 0 68 4 2 64 chain 18948 chr20 63025520 + 51127349 51127753 L1PB1 5432 + 5059 5423 130231 44 6 2 12 8 5 16 6 1 9 0 3 7 5 1 8 3 1 54 1 0 14 1 0 45 1 0 15 14 1 30 7 4 13 7 5 21 1 0 21 1 0 13 1 0 14 1 0 5 chain 4251 chr20 63025520 + 51142745 51142899 MER58A 224 + 47 205 203865 30 51 53 12 27 29 34 chain 43544 chr20 63025520 + 51148376 51148886 L1PA6 6164 + 5641 6162 64746 191 0 1 121 1 11 197 chain 537148 chr20 63025520 + 51159487 51165967 L1PA5 6144 + 0 6135 3292 248 0 5 621 0 1 294 9 0 66 1 0 588 315 0 352 0 2 136 2 1 965 0 1 1348 1 0 124 22 0 283 0 1 955 6 0 144 chain 2650 chr20 63025520 + 51191739 51191823 L1MC2 1988 + 1904 1979 231012 15 43 34 26 chain 6063 chr20 63025520 + 51196035 51196111 MLT1B 390 - 34 110 184716 76 chain 4980 chr20 63025520 + 51202000 51202137 MER58A 224 + 4 135 195369 36 8 10 33 45 37 15 chain 4108 chr20 63025520 + 51241599 51241644 MADE1 96 - 50 95 205800 45 chain 39869 chr20 63025520 + 51244301 51244790 L1PA7 6471 + 5983 6469 69507 296 0 1 27 2 0 5 2 0 18 1 2 84 0 1 42 2 0 10 chain 18486 chr20 63025520 + 51246041 51246341 THE1B 368 + 0 306 131544 169 1 0 21 7 10 9 1 5 18 4 3 7 1 0 30 13 15 19 chain 33024 chr20 63025520 + 51256941 51257708 L1PB1 5432 - 12 527 79178 16 1 0 13 1 0 21 1 0 21 20 17 5 2 0 30 18 6 11 2 7 4 0 1 32 1 0 15 2 1 51 2 0 11 4 0 12 1 0 8 1 0 24 1 0 11 3 0 164 224 0 34 chain 18148 chr20 63025520 + 51257460 51257665 L1PA4 6152 + 5936 6141 132463 205 chain 4180 chr20 63025520 + 51303939 51303991 MER5A 189 - 118 170 204823 52 chain 24490 chr20 63025520 + 51316332 51316624 AluY 311 + 8 302 107595 64 0 3 43 1 0 184 chain 9347 chr20 63025520 + 51317819 51317950 MER5A1 166 - 4 128 163815 37 0 1 40 1 0 40 7 0 6 chain 11129 chr20 63025520 + 51327469 51327597 L1PA5 6144 - 2 130 155702 128 chain 7994 chr20 63025520 + 51344001 51344156 LTR12D 1347 - 264 394 171096 32 3 2 30 4 0 16 29 9 41 chain 5776 chr20 63025520 + 51426225 51426286 L1PA5 6144 + 5856 5917 187382 61 chain 17157 chr20 63025520 + 51426286 51426484 L1PA5 6144 + 5943 6141 135145 198 chain 7677 chr20 63025520 + 51491137 51491422 MER58B 340 - 13 331 173067 80 171 204 34 chain 20858 chr20 63025520 + 51492922 51493164 L1PA4 6152 - 348 586 124433 7 4 0 231 chain 31643 chr20 63025520 + 51493164 51493519 L1PA4 6152 + 5796 6152 81416 347 0 1 8 chain 6229 chr20 63025520 + 51545362 51545495 MER5A 189 + 6 140 183325 63 42 43 28 chain 12463 chr20 63025520 + 51548868 51549024 L1PA8 5853 + 5699 5853 150405 41 2 1 19 1 0 93 chain 9692 chr20 63025520 + 51551410 51551560 MER5A 189 - 7 188 162132 106 0 27 15 15 19 14 chain 6450 chr20 63025520 + 51557590 51557669 MER58A 224 - 100 179 181644 79 chain 56671 chr20 63025520 + 51582930 51583715 L1PA8 5853 - 0 774 54739 93 1 0 9 1 0 10 2 1 51 1 2 7 2 1 46 16 7 16 2 0 48 1 0 388 10 14 65 1 0 7 0 1 8 chain 61873 chr20 63025520 + 51586204 51587265 L1PB3 3668 + 2609 3582 51958 52 17 18 35 6 5 111 1 3 155 2 0 18 15 10 67 1 0 27 0 1 5 1 0 116 2 0 59 8 7 90 11 10 14 0 7 59 82 4 14 10 8 24 3 1 37 6 3 13 chain 6393 chr20 63025520 + 51637806 51637884 MER5A 189 + 30 108 182079 78 chain 39839 chr20 63025520 + 51641036 51641515 L1PA7 6471 - 1 479 69559 57 1 0 421 chain 3911 chr20 63025520 + 51668611 51668807 L1MB2 1706 - 74 253 208684 21 1 0 7 133 117 34 chain 21999 chr20 63025520 + 51673445 51673756 THE1B 368 + 0 327 120234 169 1 0 20 8 28 13 1 0 12 2 1 65 1 0 19 chain 39014 chr20 63025520 + 51706391 51706922 MLT2A2 560 - 8 553 70729 61 0 1 17 4 6 48 0 11 361 12 7 12 0 5 16 chain 19835 chr20 63025520 + 51714191 51714434 7SK 245 + 1 245 127695 226 0 1 17 chain 9410 chr20 63025520 + 51719409 51719511 L1PA2 6032 - 1 103 163504 102 chain 2935 chr20 63025520 + 51767074 51767110 MER58D 378 + 323 359 226421 36 chain 4153 chr20 63025520 + 51770436 51770484 MLT1H 522 - 236 284 205207 48 chain 12903 chr20 63025520 + 51779991 51780130 L1HS 6032 - 0 139 148616 139 chain 4010 chr20 63025520 + 51781036 51781086 MER3 215 + 1 51 207227 50 chain 3152 chr20 63025520 + 51794404 51794443 MIRb 242 + 97 136 221892 39 chain 3925 chr20 63025520 + 51862193 51862241 MER5A1 166 - 77 126 208495 11 0 1 37 chain 10066 chr20 63025520 + 51886241 51886349 L1HS 6032 + 5924 6032 160238 108 chain 21701 chr20 63025520 + 51890537 51890811 AluSc5 308 + 0 283 121384 91 12 21 171 chain 21585 chr20 63025520 + 51892218 51892471 AluSp 311 + 34 287 121827 253 chain 20786 chr20 63025520 + 51910284 51910563 AluSc5 308 + 10 287 124661 132 3 0 5 5 8 78 6 4 50 chain 18091 chr20 63025520 + 51920595 51920793 L1PA3long 6157 - 15 213 132615 198 chain 107846 chr20 63025520 + 52013457 52014674 L1PA5 6144 + 4927 6140 34768 983 5 1 229 chain 31209 chr20 63025520 + 52017952 52018857 L1PB1 5432 - 9 574 82146 5 1 0 14 1 0 12 2 1 21 1 0 24 2 0 13 40 20 7 0 6 4 1 0 16 7 6 38 1 0 15 2 1 52 13 10 12 1 0 8 1 0 24 3 0 7 326 4 19 0 3 24 0 1 79 0 13 101 3 0 5 chain 3668 chr20 63025520 + 52028979 52029062 L1MB3 1562 - 8 90 212432 27 30 29 26 chain 23956 chr20 63025520 + 52036986 52037319 AluY 311 + 0 300 110582 39 0 3 90 0 1 41 38 1 125 chain 20811 chr20 63025520 + 52045871 52046216 THE1B 368 + 0 368 124565 35 5 20 117 2 1 19 47 57 38 6 5 76 chain 4700 chr20 63025520 + 52049223 52049278 L1PB3 3668 + 3087 3142 198534 55 chain 35165 chr20 63025520 + 52064354 52065114 LOR1a 498 - 0 490 75962 22 30 29 6 1 0 27 268 0 406 chain 540346 chr20 63025520 + 52072104 52078103 L1PA3long 6157 - 0 6157 2763 147 1 4 698 0 4 2144 3 0 554 0 6 781 0 1 408 0 9 495 1 129 63 0 7 442 0 1 7 0 1 103 0 1 152 chain 551338 chr20 63025520 + 52089183 52095191 L1PA2 6032 + 0 6009 1270 74 0 1 182 1 0 10 0 1 5741 chain 5727 chr20 63025520 + 52096163 52096241 MER20B 722 - 467 544 187871 10 1 0 67 chain 557065 chr20 63025520 + 52120390 52126413 L1PA2 6032 + 3 6030 603 5157 0 4 866 chain 5139 chr20 63025520 + 52131031 52131102 L1MA4 2864 + 2740 2809 193681 26 2 0 43 chain 29591 chr20 63025520 + 52140285 52140685 L1PA8 5853 + 5458 5853 86230 12 0 1 50 1 0 43 1 0 45 2 0 70 1 0 9 1 0 6 0 1 48 1 0 14 7 6 41 0 1 48 chain 2852 chr20 63025520 + 52149016 52149049 Charlie4a 502 - 180 213 227841 33 chain 7720 chr20 63025520 + 52161163 52161262 HY1 111 + 10 111 172786 72 0 2 27 chain 24107 chr20 63025520 + 52161352 52161626 AluSc 308 + 10 284 109706 274 chain 19403 chr20 63025520 + 52166631 52167001 MSTA 426 - 37 424 128937 35 0 1 35 17 25 29 38 37 15 9 12 37 0 4 15 13 14 23 1 2 103 chain 26363 chr20 63025520 + 52245775 52246082 AluSp 311 - 3 310 98560 307 chain 6148 chr20 63025520 + 52260663 52260890 AluSp 311 + 12 238 184000 28 135 0 13 0 134 51 chain 24880 chr20 63025520 + 52278616 52278921 AluSp 311 - 0 303 105458 160 0 3 6 3 0 35 2 0 99 chain 28722 chr20 63025520 + 52282072 52282373 AluYa5 310 - 9 310 90237 301 chain 5334 chr20 63025520 + 52309573 52309752 L1PB1 5432 + 5263 5422 191693 16 1 0 17 2 0 6 16 6 17 37 32 13 1 0 17 18 17 18 chain 26371 chr20 63025520 + 52311479 52311789 AluY 311 + 0 306 98529 133 4 0 173 chain 24899 chr20 63025520 + 52318731 52319046 AluY 311 + 0 310 105345 28 0 1 31 4 1 61 2 0 40 1 0 148 chain 3688 chr20 63025520 + 52326557 52326671 L1MB3 1562 - 299 412 212121 37 48 0 9 2 49 18 chain 24031 chr20 63025520 + 52350184 52350470 AluY 311 + 8 296 110160 47 0 1 76 0 1 163 chain 7107 chr20 63025520 + 52350470 52350695 MLT1C 463 + 191 434 176705 6 4 0 19 113 135 83 chain 26683 chr20 63025520 + 52375999 52376300 AluYf4 310 - 8 310 97375 232 0 1 69 chain 4749 chr20 63025520 + 52393157 52393214 MLT1D 503 - 2 59 197927 57 chain 3197 chr20 63025520 + 52400664 52400716 L1ME1 1623 + 1437 1483 220989 9 6 0 37 chain 6178 chr20 63025520 + 52402247 52402322 MER2 342 + 261 336 183756 75 chain 6943 chr20 63025520 + 52419680 52419779 MER63D 473 + 40 142 177874 55 3 6 41 chain 23616 chr20 63025520 + 52430939 52431240 AluY 311 + 10 304 112491 105 10 3 186 chain 26084 chr20 63025520 + 52433835 52436678 L1M1 2793 - 108 2252 99689 12 1 0 21 2 1 23 1 0 82 1 0 43 2038 1450 50 1 0 101 1 0 8 3 1 54 1 0 5 7 8 15 130 109 42 133 61 9 3 0 11 1 0 4 6 5 8 3 0 8 2 0 13 chain 10507 chr20 63025520 + 52439552 52439787 AluJb 308 + 6 279 158220 41 69 109 10 3 0 30 11 12 71 chain 126397 chr20 63025520 + 52470320 52471764 SVA_D 2077 + 7 2071 28975 12 5 6 11 8 0 340 0 4 137 0 2 36 0 40 92 0 40 181 0 537 531 0 4 91 chain 21783 chr20 63025520 + 52475059 52475912 L1PB1 5432 - 10 499 121090 18 1 0 13 1 0 21 1 0 26 15 12 5 2 0 19 25 12 16 1 0 44 1 0 15 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 21 3 0 9 446 117 58 chain 15307 chr20 63025520 + 52479027 52479187 SVA_D 2077 - 21 181 140474 160 chain 33961 chr20 63025520 + 52499102 52499594 L1MA2 4263 - 164 643 77673 41 7 0 92 1 0 8 1 0 140 30 27 129 1 0 42 chain 24999 chr20 63025520 + 52527564 52527909 THE1A 353 - 0 345 104796 155 8 7 81 7 6 29 0 1 47 0 1 18 chain 12430 chr20 63025520 + 52561951 52562105 L1PA4 6152 - 9 162 150529 12 1 0 141 chain 20898 chr20 63025520 + 52582514 52582803 L1PB2 3958 + 3554 3838 124282 63 1 0 55 10 9 74 3 1 19 1 0 63 chain 3278 chr20 63025520 + 52584766 52584806 MER58C 217 + 154 194 219409 40 chain 39570 chr20 63025520 + 52590395 52590953 LTR12 884 + 0 650 69936 21 4 3 31 0 107 83 40 0 72 0 25 36 2 0 256 0 3 13 chain 9108 chr20 63025520 + 52594691 52594794 L1PA3long 6157 + 5800 5903 165034 103 chain 6214 chr20 63025520 + 52640629 52640703 MIRb 242 - 99 174 183454 42 0 1 32 chain 213303 chr20 63025520 + 52648381 52651531 L1PA13 3608 + 242 3548 18272 13 8 6 5 0 2 13 20 18 146 2 0 16 3 15 7 17 0 15 18 17 10 8 7 99 2 0 103 0 5 18 0 1 48 0 1 242 1 0 4 0 1 233 0 1 49 6 7 41 14 186 92 0 1 85 0 1 168 20 17 26 4 8 279 2 1 157 8 13 7 1 0 107 1 14 6 0 1 550 12 0 7 0 12 9 1 0 27 2 1 113 2 0 60 7 6 47 3 1 9 9 7 40 2 0 5 2 0 17 1 0 23 6 3 13 5 0 14 1 0 4 11 5 8 1 0 6 2 0 7 chain 10460 chr20 63025520 + 52702340 52702468 MER85 139 + 0 139 158435 95 0 11 33 chain 6802 chr20 63025520 + 52711257 52711372 MER85 139 - 0 137 178937 29 5 15 13 10 22 58 chain 14946 chr20 63025520 + 52711614 52711785 L1PA5 6144 - 12 183 141479 171 chain 28796 chr20 63025520 + 52716880 52717251 THE1B 368 - 0 368 89910 176 2 0 18 3 2 4 1 0 26 0 1 141 chain 3238 chr20 63025520 + 52733418 52733452 MIR 256 + 105 139 220264 34 chain 4278 chr20 63025520 + 52733714 52733762 L1PA6 6164 + 6114 6162 203489 48 chain 46159 chr20 63025520 + 52747525 52748080 L1PA7 6471 - 12 566 61889 137 0 7 7 8 0 403 chain 24759 chr20 63025520 + 52751874 52752222 THE1B 368 - 0 352 106118 49 0 8 25 1 0 94 2 0 19 2 1 38 11 0 8 0 11 99 chain 3613 chr20 63025520 + 52758046 52758144 MER20 218 + 29 129 213438 14 43 45 41 chain 7671 chr20 63025520 + 52765380 52765472 AluSc 308 + 17 109 173092 92 chain 20820 chr20 63025520 + 52767573 52767856 MER41B 635 - 88 371 124542 38 0 1 40 18 17 187 chain 50051 chr20 63025520 + 52819217 52819835 L1PA8 5853 - 0 615 58983 58 0 2 52 2 1 61 1 0 67 13 11 37 1 0 326 chain 3938 chr20 63025520 + 52839236 52839285 MER5A1 166 - 88 137 208302 49 chain 107150 chr20 63025520 + 52849748 52850951 L1PA5 6144 - 19 1223 34933 917 0 1 286 chain 358516 chr20 63025520 + 52856581 52860675 L1PA4 6152 + 2019 6146 11393 1497 2 0 94 0 1 602 0 1 345 0 1 78 0 5 40 0 11 604 1 5 41 0 1 208 0 9 476 0 1 57 0 1 49 chain 13330 chr20 63025520 + 52861525 52861708 L1PB2 3958 - 120 299 146975 63 2 1 21 2 0 72 1 0 22 chain 93721 chr20 63025520 + 52866296 52867342 SVA_E 1901 - 0 1070 38430 806 1 0 136 2 1 35 14 38 4 0 1 43 0 1 5 chain 10232 chr20 63025520 + 52877322 52877527 MER44A 345 + 105 319 159463 6 4 0 37 0 9 72 52 56 34 chain 16859 chr20 63025520 + 52887161 52887348 L1PA4 6152 - 263 450 135943 187 chain 5106 chr20 63025520 + 52887348 52887407 L1PA4 6152 + 5944 6003 194016 59 chain 13329 chr20 63025520 + 52887407 52887554 L1PA4 6152 + 6004 6151 146979 147 chain 3175 chr20 63025520 + 52900396 52900433 MIRb 242 - 110 147 221421 37 chain 16777 chr20 63025520 + 52904788 52905248 L1PB1 5432 - 10 389 136175 18 1 0 13 1 0 21 1 0 23 26 21 15 8 0 11 2 0 4 1 0 8 10 9 43 1 0 12 5 4 50 4 2 9 2 0 3 2 0 12 1 0 6 1 0 24 91 40 31 chain 42490 chr20 63025520 + 52907224 52907841 MER41B 635 + 0 635 66025 74 1 0 25 0 1 25 1 2 199 4 3 6 0 1 44 10 8 63 22 38 6 0 3 13 0 1 95 2 1 27 chain 17322 chr20 63025520 + 52922790 52923150 THE1B 368 - 3 368 134728 44 16 15 64 78 83 24 17 15 6 0 3 111 chain 27230 chr20 63025520 + 52947345 52947635 AluYa5 310 - 2 292 95498 290 chain 13655 chr20 63025520 + 52952446 52952695 L1PA16 3655 + 1757 1993 145761 38 1 0 67 28 30 32 18 3 13 3 4 49 chain 16263 chr20 63025520 + 52960734 52960922 L1PA4 6152 + 5823 6004 137571 173 7 0 8 chain 11812 chr20 63025520 + 52960923 52961054 L1PA4 6152 + 6012 6143 152973 131 chain 151793 chr20 63025520 + 52991014 52992690 L1PA3long 6157 - 0 1672 24363 527 0 1 611 6 1 532 chain 18860 chr20 63025520 + 53019663 53019876 L1PA2 6032 + 5818 6032 130488 68 0 1 145 chain 10035 chr20 63025520 + 53027271 53027557 L1MA8 2339 - 71 323 160404 11 1 0 21 2 0 38 6 0 24 119 94 64 chain 17583 chr20 63025520 + 53038344 53038616 HSMAR2 1300 - 0 272 134048 62 1 0 7 0 1 143 38 37 9 0 1 12 chain 23903 chr20 63025520 + 53042432 53042714 AluSp 311 - 21 303 110896 282 chain 31993 chr20 63025520 + 53042723 53043335 L1PB1 5432 + 4905 5423 80877 193 6 1 17 60 1 20 1 0 5 34 27 49 5 4 14 1 0 44 1 0 16 3 0 15 8 0 15 24 20 24 1 0 22 1 0 12 1 0 14 1 0 5 chain 55494 chr20 63025520 + 53060682 53061347 L1PA7 6471 - 6 672 55419 6 4 0 410 0 5 245 chain 30513 chr20 63025520 + 53061347 53061717 L1PA7 6471 + 5427 5798 83397 197 0 1 173 chain 179 chr20 63025520 + 53068275 53068315 MER67A 545 + 0 40 195923 40 chain 9225 chr20 63025520 + 53068319 53068453 MER50 708 + 0 128 164427 44 0 3 6 8 0 5 1 0 70 chain 179 chr20 63025520 + 53069338 53069378 MER67A 545 + 40 80 195923 40 chain 23718 chr20 63025520 + 53071183 53071627 MER57A1 433 - 0 433 111951 111 147 136 186 chain 27307 chr20 63025520 + 53078709 53079067 THE1A 353 + 0 353 95255 109 6 5 67 2 0 17 1 0 83 1 0 72 chain 42333 chr20 63025520 + 53096687 53097219 MER41A 554 + 0 533 66230 247 8 0 58 0 3 122 0 1 38 7 12 52 chain 54800 chr20 63025520 + 53134673 53135282 L1PA4 6152 - 9 618 55842 609 chain 30254 chr20 63025520 + 53135282 53135635 L1PA4 6152 + 5179 5533 84042 121 0 1 232 chain 13116 chr20 63025520 + 53138654 53138841 MER30 238 - 0 207 147778 39 0 3 58 2 0 8 10 29 70 chain 3262 chr20 63025520 + 53154329 53154365 MER6B 211 + 32 68 219755 36 chain 18490 chr20 63025520 + 53162939 53163153 L1PA5 6144 - 0 214 131533 214 chain 24180 chr20 63025520 + 53178206 53178495 AluSp 311 - 24 311 109319 110 1 0 70 1 0 107 chain 27902 chr20 63025520 + 53196324 53196696 L1PA7 6471 - 8 377 93357 6 5 0 52 0 1 193 10 11 106 chain 21144 chr20 63025520 + 53221257 53221552 AluSg7 307 + 0 292 123394 64 2 0 67 7 8 65 12 10 78 chain 6173 chr20 63025520 + 53252426 53252516 MSTD 398 - 21 112 183783 50 8 9 32 chain 12024 chr20 63025520 + 53276965 53277143 MER4A1_ 611 + 418 598 152106 117 19 17 21 0 4 21 chain 28864 chr20 63025520 + 53292661 53292965 AluYa5 310 - 6 310 89608 304 chain 26216 chr20 63025520 + 53310867 53311233 THE1B 368 - 0 368 99137 74 1 0 100 0 1 8 14 13 127 0 5 27 2 0 13 chain 25593 chr20 63025520 + 53333748 53334085 THE1B 368 - 11 361 101764 165 2 0 13 0 1 9 1 0 105 5 20 37 chain 13154 chr20 63025520 + 53335136 53335279 L1PA2 6032 - 339 482 147630 143 chain 22319 chr20 63025520 + 53335279 53335526 L1PA2 6032 + 5785 6032 118829 247 chain 8557 chr20 63025520 + 53335677 53335771 AluYk4 311 - 3 97 167980 94 chain 82139 chr20 63025520 + 53340807 53341925 L1PA8 5853 - 0 1093 42706 90 4 3 16 13 12 32 3 0 7 4 0 9 9 8 68 2 0 44 1 0 207 7 9 79 12 0 179 2 0 21 0 4 56 2 0 3 2 0 246 chain 9867 chr20 63025520 + 53341925 53342040 L1PA8 5853 + 4653 4768 160815 115 chain 21966 chr20 63025520 + 53348356 53348644 AluSq4 311 + 10 295 120374 42 12 8 71 0 1 163 chain 22173 chr20 63025520 + 53356775 53357013 AluYb8 318 - 0 238 119480 238 chain 6273 chr20 63025520 + 53365266 53365347 Tigger5 388 + 136 217 182984 81 chain 11668 chr20 63025520 + 53367083 53367731 MER72 723 + 456 723 153609 20 5 6 42 406 22 15 56 58 104 chain 67914 chr20 63025520 + 53369236 53370022 L1PA5 6144 - 3835 4622 49278 446 0 1 340 chain 331895 chr20 63025520 + 53370025 53373810 L1PA5 6144 + 2333 6131 12133 426 0 5 364 0 5 43 2 0 506 2 0 494 7 8 642 0 5 500 0 1 799 chain 26318 chr20 63025520 + 53384656 53385019 THE1B 368 + 0 367 98750 37 1 6 65 1 2 62 7 6 116 1 0 73 chain 13848 chr20 63025520 + 53394985 53395262 MER34B 572 - 42 323 145075 81 1 3 7 2 0 39 19 19 11 44 48 73 chain 526836 chr20 63025520 + 53399051 53404888 L1PA3long 6157 + 0 5981 4517 781 0 128 140 0 2 138 5 8 515 0 1 1502 1 0 48 0 4 517 0 1 1362 0 1 38 0 1 122 1 5 73 1 2 53 1 0 539 chain 197097 chr20 63025520 + 53427396 53429561 L1PA3long 6157 - 0 2164 19419 12 3 5 955 0 1 1181 4 0 10 chain 127939 chr20 63025520 + 53431298 53432871 L1PA7 6471 + 4889 6469 28586 76 15 14 489 1 0 36 5 11 108 0 5 492 1 2 6 4 0 168 13 14 159 chain 24761 chr20 63025520 + 53490897 53491185 AluY 311 + 11 299 106104 15 1 0 99 1 2 172 chain 99878 chr20 63025520 + 53492184 53493283 L1PA3long 6157 - 8 1105 36816 323 1 0 386 1 0 388 chain 110363 chr20 63025520 + 53498709 53499999 L1PA5 6144 - 1 1294 34105 845 1 4 444 chain 259928 chr20 63025520 + 53500000 53503098 L1P2 5180 - 318 3425 15706 452 0 1 48 0 4 391 0 1 277 10 12 177 1 5 305 2 0 867 8 0 208 8 11 287 0 4 57 chain 262061 chr20 63025520 + 53517286 53520410 L1PA5 6144 + 2966 6139 15578 210 7 6 234 4 0 11 4 5 120 11 4 42 4 26 30 1 0 23 3 1 658 0 8 69 0 1 69 8 0 654 0 9 198 1 23 240 0 8 106 1 3 248 9 8 17 1 0 90 0 1 51 chain 78206 chr20 63025520 + 53521962 53522858 L1P1 4361 - 2263 3155 44416 141 0 1 507 11 6 237 chain 71503 chr20 63025520 + 53522859 53523671 L1PA4 6152 + 5337 6152 47695 318 0 3 494 chain 102742 chr20 63025520 + 53550372 53551500 L1PA3long 6157 + 5010 6142 36067 300 0 4 828 chain 20762 chr20 63025520 + 53573111 53573392 AluSg7 307 - 16 297 124747 9 2 0 7 0 2 142 1 2 104 2 1 14 chain 40974 chr20 63025520 + 53591150 53591619 L1PA5 6144 - 12 481 67946 469 chain 32114 chr20 63025520 + 53600193 53600652 LTR2B 499 - 0 499 80663 182 1 0 13 1 2 38 0 5 7 5 0 119 3 22 42 1 0 4 5 26 22 2 3 14 chain 3011 chr20 63025520 + 53602642 53602692 Tigger9a 622 - 33 84 224817 29 6 7 15 chain 7050 chr20 63025520 + 53635398 53635474 L1PA5 6144 - 4 80 177107 76 chain 29299 chr20 63025520 + 53657050 53657404 THE1A 353 + 0 353 87575 110 1 0 243 chain 120320 chr20 63025520 + 53657404 53658937 THE1A-int 1579 + 0 1574 30933 112 7 8 341 1 2 20 28 23 487 5 7 111 0 27 109 3 18 309 chain 267228 chr20 63025520 + 53679537 53683160 L1PA10 4194 - 77 3788 15331 369 6 5 34 0 3 389 12 38 138 1 0 12 14 5 252 0 83 56 11 10 48 0 4 7 1 0 5 22 3 20 7 6 161 8 7 64 0 2 172 0 1 192 8 1 18 1 2 388 0 2 160 13 13 489 1 5 24 21 22 27 1 0 164 27 28 204 2 0 17 9 13 48 chain 62578 chr20 63025520 + 53692404 53693108 L1PA3long 6157 - 2 717 51637 49 0 4 83 0 7 572 chain 29840 chr20 63025520 + 53693108 53693436 L1PA3long 6157 + 5156 5484 85315 328 chain 28548 chr20 63025520 + 53700445 53700748 AluYa5 310 - 7 310 90972 303 chain 58953 chr20 63025520 + 53718150 53718903 MER4E1 777 - 24 777 53427 121 8 0 82 2 10 76 1 2 214 0 1 4 2 1 123 0 1 40 1 0 61 1 0 17 chain 28778 chr20 63025520 + 53726222 53726530 AluYa5 310 - 2 310 89986 308 chain 36749 chr20 63025520 + 53734016 53734506 LTR2B 499 - 0 499 73877 182 1 0 8 0 1 178 1 20 39 11 0 57 0 1 13 chain 22933 chr20 63025520 + 53770620 53770978 THE1B 368 + 0 368 115946 169 1 0 11 18 25 4 1 0 4 0 1 14 14 12 28 4 10 90 chain 7536 chr20 63025520 + 53773386 53773584 L1PB1 5432 - 8 195 173942 4 1 0 16 1 0 13 1 0 21 1 0 20 60 54 13 6 5 41 chain 117503 chr20 63025520 + 53787522 53788831 L1PA4 6152 + 4825 6134 31966 1309 chain 556761 chr20 63025520 + 53836846 53843008 L1PA3long 6157 - 0 6151 639 1031 1 0 1650 13 2 2420 0 1 1047 chain 22252 chr20 63025520 + 53844858 53845130 L1PA5 6144 - 0 264 119109 140 7 0 32 1 0 92 chain 16462 chr20 63025520 + 53858026 53858207 L1PA3long 6157 + 5976 6157 137035 181 chain 344822 chr20 63025520 + 53861213 53865932 L1PA8 5853 + 1402 5852 11759 343 6 7 220 0 1 29 0 2 14 0 1 67 4 7 521 0 1 152 10 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63025520 + 53996532 53998575 L1PA3long 6157 - 0 2041 20556 767 1 0 1100 1 0 174 chain 8676 chr20 63025520 + 54021993 54022117 L1MA3 4352 - 4050 4185 167323 68 2 6 20 0 4 29 0 3 5 chain 35067 chr20 63025520 + 54028875 54029256 L1PA2 6032 + 5636 6022 76093 139 0 1 198 0 4 44 chain 9907 chr20 63025520 + 54031046 54031172 Tigger3a 397 - 110 238 161037 30 2 0 77 0 4 17 chain 27845 chr20 63025520 + 54033320 54033615 AluYb9 318 - 2 297 93543 295 chain 11177 chr20 63025520 + 54079010 54079158 MER1A 529 + 378 525 155528 79 3 2 66 chain 25286 chr20 63025520 + 54096634 54096994 THE1C 375 - 0 375 103284 133 32 42 19 0 1 41 1 5 134 chain 25840 chr20 63025520 + 54107391 54107663 AluYa5 310 - 0 272 100704 272 chain 336538 chr20 63025520 + 54109040 54113324 L1PA7 6471 - 7 4311 11983 5 2 0 135 7 6 135 0 3 67 0 3 494 10 12 129 0 1 4 15 7 103 0 1 97 4 1 65 0 4 381 0 2 22 0 1 117 0 4 40 1 0 17 0 3 84 0 2 205 0 3 92 0 4 633 1 3 50 1 0 31 1 0 608 9 13 245 3 1 55 15 17 126 2 3 54 12 9 207 chain 149245 chr20 63025520 + 54113328 54115340 L1PA4 6152 - 14 1705 24722 835 320 0 804 2 1 51 chain 30296 chr20 63025520 + 54114165 54114483 AluYb8 318 - 0 318 83935 318 chain 6178 chr20 63025520 + 54115340 54115409 L1PA4 6152 + 4372 4441 183017 69 chain 10213 chr20 63025520 + 54143561 54143669 L1PA3long 6157 - 432 540 158261 108 chain 32400 chr20 63025520 + 54143669 54144040 L1PA3long 6157 + 5771 6142 80197 133 2 1 109 0 1 127 chain 24692 chr20 63025520 + 54156364 54156662 L1PA7 6471 + 6169 6467 106488 298 chain 31477 chr20 63025520 + 54181494 54181845 L1PA3long 6157 - 0 357 81680 14 0 6 337 chain 78627 chr20 63025520 + 54187010 54188287 L1PA7 6471 - 12 992 44211 107 0 1 59 0 2 427 318 12 55 0 3 169 1 0 21 0 4 120 chain 8244 chr20 63025520 + 54188288 54188385 L1PA7 6471 + 5373 5470 169714 97 chain 80132 chr20 63025520 + 54192889 54194071 L1PB 1623 - 38 1181 43535 10 2 0 22 101 70 29 2 1 7 1 0 141 12 9 196 0 2 46 0 2 478 9 5 76 5 4 45 chain 19212 chr20 63025520 + 54194071 54194540 L1PB1 5432 + 5006 5418 129495 91 44 17 13 38 32 8 2 0 29 7 8 16 6 5 12 1 0 42 2 1 16 1 0 4 2 0 11 9 0 16 3 1 4 1 0 10 15 13 15 1 0 21 1 0 13 1 0 14 chain 27907 chr20 63025520 + 54229110 54229454 L1P1 4361 + 2786 3130 93334 344 chain 5037 chr20 63025520 + 54256246 54256326 L1MA8 2339 + 2119 2196 194754 34 13 10 33 chain 18843 chr20 63025520 + 54276551 54276936 MSTA 426 - 1 426 130536 107 2 22 60 2 0 12 28 28 10 13 14 28 58 79 65 chain 27566 chr20 63025520 + 54284710 54285064 THE1A 353 + 1 353 94449 109 1 0 92 1 0 151 chain 128119 chr20 63025520 + 54285064 54286633 THE1A-int 1579 + 0 1574 28540 440 0 2 201 15 24 248 0 2 133 5 0 153 2 0 112 1 0 259 chain 25875 chr20 63025520 + 54286652 54286999 THE1A 353 + 14 353 100550 96 1 0 92 1 0 39 9 3 109 chain 38008 chr20 63025520 + 54303852 54304382 MER41A 554 + 13 554 72123 174 0 10 142 0 1 44 16 23 62 6 12 39 13 0 34 chain 13829 chr20 63025520 + 54309490 54309723 THE1D 372 - 0 245 145143 33 12 13 14 0 2 64 2 8 45 5 6 14 7 9 37 chain 20098 chr20 63025520 + 54340737 54341091 THE1D 372 - 19 372 126835 13 1 0 24 14 8 84 13 14 16 3 7 26 7 8 68 0 14 7 14 0 64 chain 31330 chr20 63025520 + 54370959 54371390 LTR7B 505 - 2 505 81930 49 14 13 82 1 0 79 8 10 18 6 68 69 0 10 105 chain 241442 chr20 63025520 + 54381955 54384668 L1PA3long 6157 - 0 2702 16698 55 0 4 194 1 0 1117 22 0 429 0 4 663 0 4 232 chain 148249 chr20 63025520 + 54388554 54390283 L1PA5 6144 - 0 1739 24853 143 0 6 13 5 0 171 0 1 1025 1 3 139 0 6 232 chain 44006 chr20 63025520 + 54390283 54390785 L1PA5 6144 + 3905 4409 63970 19 0 1 36 0 1 447 chain 238690 chr20 63025520 + 54423553 54426207 L1PA3long 6157 + 3449 6103 16842 2411 0 1 43 1 0 199 chain 560168 chr20 63025520 + 54434622 54440577 L1HS 6032 + 3 6032 343 2238 1 0 2730 0 75 986 chain 24197 chr20 63025520 + 54469435 54469782 L1PA8 5853 + 5511 5849 109233 51 1 0 35 1 0 4 8 7 74 13 11 46 3 2 19 1 0 48 2 0 41 chain 554120 chr20 63025520 + 54475285 54481448 L1PA3long 6157 - 0 6151 933 1129 6 10 271 2 0 1233 0 2 284 0 1 56 1 0 1305 17 0 847 2 4 104 1 0 905 chain 53573 chr20 63025520 + 54485473 54486099 L1PA6 6164 + 5529 6156 56628 486 0 1 140 chain 6441 chr20 63025520 + 54486179 54486273 MLT1D 503 + 408 503 181700 50 2 3 42 chain 7911 chr20 63025520 + 54498538 54498635 MLT2A2 560 - 461 560 171581 11 0 2 86 chain 37744 chr20 63025520 + 54511826 54512318 MLT2A2 560 + 17 552 72492 166 1 0 125 0 32 59 5 16 75 0 1 61 chain 53657 chr20 63025520 + 54513821 54514411 L1PA4 6152 - 1 590 56579 259 1 0 330 chain 162462 chr20 63025520 + 54515272 54517518 L1PB1 5432 - 10 2289 23005 17 1 0 13 1 0 22 1 0 24 2 0 14 1 0 5 40 27 4 1 0 15 5 4 41 6 5 10 2 1 52 2 0 9 2 0 3 2 0 12 3 2 4 1 0 24 0 41 267 0 9 179 1 0 160 0 6 246 0 2 275 1 0 40 5 6 55 0 2 120 0 5 558 chain 8726 chr20 63025520 + 54528441 54528588 MER85 139 - 0 139 167057 40 0 10 7 0 1 4 26 7 70 chain 12629 chr20 63025520 + 54568274 54568414 L1PA5 6144 - 184 326 149732 43 0 2 97 chain 14258 chr20 63025520 + 54568414 54568580 L1PA5 6144 + 5977 6144 143683 17 0 1 149 chain 53869 chr20 63025520 + 54583843 54584443 L1PA4 6152 + 5536 6139 56447 498 0 3 102 chain 38025 chr20 63025520 + 54623261 54624105 MER75 514 - 0 514 72088 16 2 0 248 329 0 125 19 20 105 chain 513500 chr20 63025520 + 54624626 54631082 L1PA7 6471 + 0 6469 5834 164 0 5 50 0 1 5 38 37 13 29 30 25 0 6 66 2 0 1 7 0 286 51 37 178 11 0 333 0 4 511 8 39 244 1 0 100 1 2 4 1 0 494 7 0 351 14 0 110 0 4 107 4 0 239 0 4 80 3 0 17 4 8 1182 1 0 671 0 1 88 9 1 116 0 3 393 2 1 131 0 23 253 0 9 8 10 1 33 chain 24720 chr20 63025520 + 54632854 54633140 AluY 311 + 15 302 106326 117 0 1 169 chain 57031 chr20 63025520 + 54637595 54638253 L1PA7 6471 - 1302 1960 54516 432 1 0 66 0 1 159 chain 69553 chr20 63025520 + 54638253 54639079 L1PA7 6471 + 5178 6004 48587 442 2 1 79 0 2 8 1 0 294 chain 36944 chr20 63025520 + 54639081 54639508 L1PA7 6471 + 6021 6447 73592 288 1 0 138 chain 2793 chr20 63025520 + 54640591 54640621 L1ME1 1623 + 352 382 228825 30 chain 32874 chr20 63025520 + 54641592 54641979 L1PA4 6152 - 0 391 79409 10 1 4 300 0 1 76 chain 2669 chr20 63025520 + 54657065 54657102 L1ME1 1623 - 1321 1357 230787 32 1 0 4 chain 64666 chr20 63025520 + 54657111 54657812 L1PA2 6032 - 2 706 50715 11 1 4 689 chain 36210 chr20 63025520 + 54657812 54658204 L1PA2 6032 + 4949 5341 74615 392 chain 15669 chr20 63025520 + 54670202 54670558 THE1B 368 - 0 368 139369 39 31 30 59 1 0 4 9 8 14 0 1 4 1 0 4 0 7 29 1 0 43 70 79 47 chain 103960 chr20 63025520 + 54681889 54683055 L1PA3long 6157 - 1724 2893 35685 77 0 1 181 1 2 626 0 1 281 chain 158741 chr20 63025520 + 54683055 54684786 L1PA3long 6157 + 4425 6156 23496 1731 chain 3747 chr20 63025520 + 54701277 54701360 MIRb 242 - 77 164 211205 18 28 32 37 chain 22896 chr20 63025520 + 54711907 54712179 L1PA7 6471 - 15 286 116126 142 1 0 129 chain 26057 chr20 63025520 + 54747179 54747486 AluY 311 + 5 307 99801 293 5 0 9 chain 31476 chr20 63025520 + 54747573 54748021 MER57A1 433 + 0 430 81682 243 0 1 32 0 1 5 60 40 108 chain 15834 chr20 63025520 + 54763665 54763908 L1PB2 3958 + 3573 3838 138844 47 1 0 36 7 29 43 2 3 22 2 0 13 0 3 6 1 0 63 chain 2902 chr20 63025520 + 54775700 54775734 MamGypLTR3 363 + 205 239 227028 34 chain 31296 chr20 63025520 + 54780727 54781173 MLT2A1 477 - 0 477 81997 37 23 55 181 0 1 23 1 2 8 4 1 169 chain 27487 chr20 63025520 + 54785844 54786220 MER51B 395 - 12 395 94693 99 1 2 10 0 1 4 15 10 12 1 11 234 chain 7767 chr20 63025520 + 54786641 54786735 MLT1B 390 + 286 380 172495 94 chain 72096 chr20 63025520 + 54786836 54787837 LTR5B 1012 - 0 1012 47438 256 2 1 132 16 16 10 13 14 95 1 0 114 9 8 26 10 9 137 0 1 51 1 14 128 chain 57087 chr20 63025520 + 54790660 54791414 MER4E 760 + 0 750 54484 24 2 0 142 1 0 5 13 7 97 0 4 92 13 8 9 1 3 55 1 0 5 1 6 293 chain 26189 chr20 63025520 + 54794330 54794665 MER4A1_ 611 - 273 611 99246 215 0 1 25 0 1 22 4 5 69 chain 32482 chr20 63025520 + 54796289 54796755 LTR10A 586 + 49 564 80061 13 4 5 7 0 1 65 21 48 20 8 18 41 0 10 47 1 0 193 0 1 46 chain 5731 chr20 63025520 + 54796989 54797072 MER41B 635 + 516 604 187829 22 0 1 35 4 8 22 chain 47334 chr20 63025520 + 54803328 54803880 MER41A 554 + 0 554 60946 30 0 1 396 0 1 126 chain 26531 chr20 63025520 + 54811396 54811742 THE1A 353 + 0 343 97926 105 6 5 92 2 0 141 chain 145512 chr20 63025520 + 54815367 54817047 L1PA5 6144 + 4447 6135 25252 641 4 1 205 1 0 511 3 0 179 0 15 136 chain 4813 chr20 63025520 + 54849139 54849217 MER52-int 3354 + 3216 3289 197203 7 1 0 7 1 0 17 1 0 30 1 0 6 1 0 6 chain 34953 chr20 63025520 + 54849994 54850389 L1PA4 6152 + 5749 6143 76258 149 1 0 245 chain 20324 chr20 63025520 + 54866469 54866797 THE1D 372 - 0 372 126170 39 1 0 87 54 58 56 0 4 23 0 33 7 0 4 61 chain 25863 chr20 63025520 + 54875060 54875368 AluSp 311 + 1 311 100592 40 6 8 262 chain 43397 chr20 63025520 + 54884390 54884863 L1PA3long 6157 + 5684 6157 64941 473 chain 15973 chr20 63025520 + 54887211 54887501 THE1B 368 + 0 306 138439 109 16 26 42 60 66 63 chain 5908 chr20 63025520 + 54889934 54890006 MLT1E3 631 + 559 631 186108 72 chain 295113 chr20 63025520 + 54890751 54895115 L1PBa1 4058 + 10 4016 13695 26 1 0 12 3 1 6 1 0 81 6 8 99 24 23 28 1 0 135 13 11 176 64 54 85 0 2 25 1 4 320 1 0 22 15 16 141 26 0 358 0 1 14 7 6 28 1 0 761 8 0 122 306 0 27 0 4 49 0 1 35 1 0 14 7 29 44 5 0 170 0 10 346 2 0 5 1 3 123 1 0 115 20 10 105 1 0 7 1 0 28 8 7 32 8 6 105 3 1 17 2 1 14 7 0 12 10 9 10 2 1 4 1 0 22 1 0 12 17 10 5 0 2 11 1 0 17 1 0 18 chain 12338 chr20 63025520 + 54896700 54896960 L1PB1 5432 + 5158 5391 150867 9 2 0 53 19 17 43 1 0 15 3 0 8 15 6 12 14 11 6 4 0 8 2 0 24 1 0 21 chain 432046 chr20 63025520 + 54911540 54916987 L1P2 5180 + 8 5178 9267 141 1 0 45 1 0 53 12 12 256 1 0 50 1 0 219 5 4 5 1 0 318 3 19 1001 306 0 41 1 0 651 0 1 395 0 4 33 0 3 1047 0 15 769 1 0 46 1 0 38 1 0 4 chain 24218 chr20 63025520 + 54962222 54962507 AluSg7 307 - 22 307 109113 285 chain 24691 chr20 63025520 + 54988454 54988755 AluSz6 309 + 8 309 106495 301 chain 66087 chr20 63025520 + 55023918 55024671 L1PA5 6144 + 5387 6138 50061 610 2 0 141 chain 5213 chr20 63025520 + 55035333 55035410 MADE1 96 - 3 96 192891 31 6 22 40 chain 23832 chr20 63025520 + 55109838 55110120 AluSp 311 + 11 297 111297 61 1 0 7 0 1 56 0 4 157 chain 23658 chr20 63025520 + 55115972 55116253 AluSp 311 - 18 300 112264 25 0 1 256 chain 31067 chr20 63025520 + 55123813 55124218 MSTA 426 + 0 407 82402 194 18 20 193 chain 47244 chr20 63025520 + 55127092 55127632 MER41A 554 + 13 554 61003 417 0 1 123 chain 22677 chr20 63025520 + 55145372 55145661 AluSp 311 + 10 302 117178 65 3 0 48 0 5 135 1 0 17 0 2 20 chain 22777 chr20 63025520 + 55163258 55163533 AluSc 308 + 19 295 116692 103 0 1 172 chain 5826 chr20 63025520 + 55168487 55168575 LTR7 482 - 0 89 186891 49 13 14 26 chain 22200 chr20 63025520 + 55189967 55190251 AluSp 311 + 8 297 119350 124 1 0 40 7 13 112 chain 19465 chr20 63025520 + 55190616 55190894 AluSz 310 + 1 274 128766 49 12 8 53 13 12 151 chain 3102 chr20 63025520 + 55253085 55253121 MER5B 177 - 3 39 222891 36 chain 7901 chr20 63025520 + 55267701 55267848 Tigger3a 397 - 75 239 171652 90 36 53 21 chain 4593 chr20 63025520 + 55278872 55279019 MER58A 224 + 47 194 199718 35 1 0 9 74 75 28 chain 25018 chr20 63025520 + 55280548 55280870 AluSp 311 - 2 311 104689 32 2 1 156 17 5 115 chain 8282 chr20 63025520 + 55288798 55289114 MLT1A0 366 - 0 303 169504 31 34 34 44 148 23 9 0 112 50 chain 5055 chr20 63025520 + 55293942 55294022 MADE1 96 + 0 96 194580 21 12 28 47 chain 28432 chr20 63025520 + 55295735 55296153 MLT2A1 477 + 0 477 91458 42 6 8 25 9 14 50 0 1 28 5 9 18 1 0 9 0 1 179 0 44 30 1 0 9 0 4 6 chain 3539 chr20 63025520 + 55330962 55331003 MSTD-int 1705 - 1649 1690 214736 41 chain 3475 chr20 63025520 + 55356452 55356492 MER20 218 + 33 73 215729 40 chain 8860 chr20 63025520 + 55361036 55361143 U6 107 - 0 107 166321 107 chain 39330 chr20 63025520 + 55406341 55406895 MER41A 554 + 0 554 70286 45 1 2 49 0 1 107 24 25 107 8 5 32 1 0 23 5 6 152 chain 40055 chr20 63025520 + 55407181 55408016 MER41A 554 - 0 554 69243 121 12 36 69 306 0 176 0 1 151 chain 2990 chr20 63025520 + 55408152 55408205 MIR 256 + 95 150 225228 24 9 11 20 chain 8115 chr20 63025520 + 55428616 55428801 MER20 218 - 13 193 170415 29 34 39 41 26 16 55 chain 23411 chr20 63025520 + 55453331 55453675 THE1B 368 + 0 347 113592 169 2 1 26 1 4 14 27 29 65 1 0 39 chain 52498 chr20 63025520 + 55453921 55454544 L1PA7 6471 + 5791 6454 57306 14 1 0 150 0 1 221 1 0 147 0 41 89 chain 45353 chr20 63025520 + 55459009 55459890 MER41A 554 - 0 554 62654 380 327 0 174 chain 44757 chr20 63025520 + 55461793 55462686 MER41A 554 + 0 554 63323 21 0 3 125 342 0 405 chain 8719 chr20 63025520 + 55469806 55469913 L1PA8 5853 - 0 106 167093 93 1 0 13 chain 6519 chr20 63025520 + 55486603 55486685 MER58A 224 - 79 161 181092 82 chain 21452 chr20 63025520 + 55522828 55523096 AluY 311 + 43 311 122325 75 1 0 14 0 1 178 chain 4100 chr20 63025520 + 55542126 55542201 MLT1D 503 - 385 464 205946 38 13 17 24 chain 24530 chr20 63025520 + 55544029 55544317 AluSp 311 - 24 311 107375 226 1 0 61 chain 3266 chr20 63025520 + 55575142 55575210 MER5A1 166 - 43 112 219672 28 19 20 21 chain 58289 chr20 63025520 + 55611857 55612549 L1PA6 6164 - 3 705 53812 157 1 0 121 0 3 75 1 9 337 chain 24004 chr20 63025520 + 55620582 55620845 L1PA3long 6157 + 5894 6157 110312 263 chain 2998 chr20 63025520 + 55631814 55631850 Tigger1 2417 - 1063 1099 225080 36 chain 6373 chr20 63025520 + 55710572 55710668 MER96B 391 + 226 319 182229 46 2 1 22 2 0 24 chain 45378 chr20 63025520 + 55725912 55726465 MER41A 554 - 0 554 62620 10 1 2 542 chain 30205 chr20 63025520 + 55782867 55783184 AluYb9 318 - 1 318 84184 317 chain 23880 chr20 63025520 + 55813707 55814051 THE1A 353 - 0 347 111027 45 10 7 118 0 1 30 6 10 32 3 2 23 4 5 53 0 1 20 chain 128558 chr20 63025520 + 55814053 55815632 THE1A-int 1579 - 0 1576 28432 461 14 7 30 0 3 669 0 1 405 chain 26226 chr20 63025520 + 55815634 55815985 THE1A 353 - 0 353 99107 58 0 2 126 1 0 5 0 1 51 6 5 80 0 1 24 chain 25709 chr20 63025520 + 55839813 55840116 AluSp 311 + 11 311 101251 26 3 0 274 chain 3453 chr20 63025520 + 55847031 55847069 MIR 256 - 108 146 216125 38 chain 2588 chr20 63025520 + 55848589 55848619 MER53 195 - 28 58 231831 30 chain 39160 chr20 63025520 + 55874850 55875322 L1PA11 4918 - 569 1046 70530 21 5 0 11 0 4 150 0 5 27 0 1 258 chain 22256 chr20 63025520 + 55878362 55878712 THE1C 375 + 0 336 119100 46 15 0 54 3 4 20 1 21 8 20 0 27 0 1 6 1 0 149 chain 6870 chr20 63025520 + 55886923 55887005 HY3 101 + 11 93 178430 82 chain 113267 chr20 63025520 + 55923269 55924701 LTR12C 1709 + 0 1709 33293 121 0 1 4 1 0 380 9 8 186 0 200 171 0 47 106 0 4 121 13 42 125 2 0 34 8 9 54 13 12 84 chain 5301 chr20 63025520 + 55971722 55971815 MER20 218 - 93 186 192009 17 0 1 16 17 16 43 chain 60460 chr20 63025520 + 55994428 55995146 L1PA6 6164 - 11 727 52604 132 8 0 10 13 19 555 chain 6451 chr20 63025520 + 56019253 56019324 PRIMA4_LTR 623 + 272 343 181635 71 chain 24175 chr20 63025520 + 56028516 56028799 AluSz 310 + 8 291 109345 283 chain 4226 chr20 63025520 + 56042011 56042083 MER20 218 + 0 75 204214 15 14 17 43 chain 74011 chr20 63025520 + 56061121 56062225 L1PB2 3958 + 2741 3837 46506 56 13 13 75 18 18 20 1 0 384 15 13 43 1 0 11 5 0 79 1 0 92 2 3 46 0 3 20 1 0 5 20 23 36 1 0 72 2 0 21 6 5 58 chain 47069 chr20 63025520 + 56111028 56111593 LTR19B 566 + 0 566 61147 159 1 0 12 0 1 341 0 1 52 chain 4148 chr20 63025520 + 56171605 56171652 MIR 256 + 73 120 205260 47 chain 16789 chr20 63025520 + 56174472 56174700 MER2 342 - 0 230 136136 40 12 13 172 0 1 4 chain 122250 chr20 63025520 + 56203675 56205159 LTR12C 1709 + 0 1709 30297 41 0 1 173 4 11 173 0 5 32 0 1 226 0 119 55 1 0 132 0 41 61 0 47 101 0 1 4 0 4 481 chain 6915 chr20 63025520 + 56206373 56206548 MLT1A 405 - 2 177 178075 36 31 30 21 38 39 49 chain 5375 chr20 63025520 + 56211768 56211836 MLT1B 390 + 304 372 191245 68 chain 105362 chr20 63025520 + 56219737 56221124 THE1B-int 1605 + 143 1605 35410 287 0 25 90 9 10 48 5 36 241 0 20 237 13 15 418 10 6 29 chain 6400 chr20 63025520 + 56252709 56252882 L1MD2 1676 + 1163 1315 182022 43 6 5 44 66 46 14 chain 3421 chr20 63025520 + 56287754 56287794 MER53 195 - 15 55 216747 40 chain 3780 chr20 63025520 + 56307914 56307957 L1MA4 2864 + 2766 2809 210655 43 chain 14858 chr20 63025520 + 56310360 56310657 THE1B 368 - 62 368 141765 64 58 65 60 32 33 72 0 1 11 chain 10412 chr20 63025520 + 56313109 56313297 MER53 195 - 0 187 158633 83 6 8 24 32 29 43 chain 24194 chr20 63025520 + 56318394 56318752 THE1B 368 - 1 368 109255 114 45 55 29 1 0 169 chain 6658 chr20 63025520 + 56397364 56397452 MER33 330 + 149 244 180018 7 0 7 81 chain 3753 chr20 63025520 + 56436337 56436381 Charlie1a 1436 - 249 294 211103 5 0 1 39 chain 136164 chr20 63025520 + 56460943 56463157 L1PB1 5432 - 14 1976 26805 12 0 2 12 1 0 22 8 7 17 2 0 9 20 17 9 9 0 15 3 0 17 1 0 43 2 1 14 2 1 51 20 11 15 1 0 8 4 5 17 239 21 13 23 24 116 0 1 104 7 10 192 4 0 168 2 1 276 0 3 220 0 2 157 1 0 56 0 1 15 10 0 277 chain 27771 chr20 63025520 + 56500574 56500946 THE1C 375 + 0 375 93795 14 2 0 33 1 2 80 8 12 234 chain 3097 chr20 63025520 + 56504034 56504075 MLT1G 592 - 306 343 222974 7 4 0 30 chain 3549 chr20 63025520 + 56513611 56513651 MIRb 242 + 96 136 214547 40 chain 6344 chr20 63025520 + 56552068 56552143 MER20 218 - 58 133 182434 75 chain 21377 chr20 63025520 + 56553002 56553315 L1PA8 5853 - 0 317 122594 93 1 0 19 2 1 48 16 14 25 0 8 37 3 4 39 2 1 28 chain 16204 chr20 63025520 + 56560723 56560915 L1PA6 6164 - 2 195 137736 9 0 1 183 chain 19205 chr20 63025520 + 56577647 56577912 L1PA7 6471 + 6207 6470 129517 78 12 10 13 1 0 77 2 0 69 0 3 13 chain 24963 chr20 63025520 + 56616882 56617219 THE1B 368 + 0 368 104992 35 11 20 106 0 16 11 1 5 100 1 0 66 0 3 6 chain 3439 chr20 63025520 + 56722034 56722074 MER53 195 - 148 188 216396 40 chain 19559 chr20 63025520 + 56726510 56726734 AluSg7 307 - 50 273 128497 126 1 0 97 chain 20625 chr20 63025520 + 56779435 56779736 THE1B 368 + 0 304 125206 169 1 0 11 19 25 4 1 0 4 0 1 16 1 0 8 5 4 62 chain 2956 chr20 63025520 + 56785761 56785801 MER5A 189 + 110 148 225949 4 1 0 28 1 0 6 chain 9865 chr20 63025520 + 56837911 56838023 L1PA5 6144 - 244 356 161259 112 chain 17188 chr20 63025520 + 56838027 56838220 L1PA5 6144 + 5951 6144 135069 193 chain 150445 chr20 63025520 + 56988201 56990162 SVA_F 1814 - 0 1707 24548 22 0 1 333 0 3 489 273 0 4 0 15 840 chain 12825 chr20 63025520 + 56989045 56989185 SVA_F 1814 - 672 812 105229 140 chain 844 chr20 63025520 + 56989198 56989227 SVA_F 1814 - 600 629 159939 29 chain 707 chr20 63025520 + 56989227 56989281 SVA_F 1814 - 918 1054 172940 14 0 2 12 0 80 13 1 0 8 0 1 6 chain 6903 chr20 63025520 + 57053121 57053369 L1MC4a 1092 - 809 1035 178164 43 131 118 31 2 0 3 7 0 31 chain 29554 chr20 63025520 + 57102085 57102461 THE1C 375 - 3 375 86401 23 1 0 219 8 5 125 chain 2836 chr20 63025520 + 57127294 57127357 MIRb 242 - 85 146 228139 13 22 20 28 chain 4249 chr20 63025520 + 57246852 57246907 Tigger4a 237 + 0 63 203890 22 0 8 33 chain 10136 chr20 63025520 + 57247405 57247621 Tigger4b 360 + 170 360 159918 30 16 9 16 17 0 31 3 5 42 15 11 20 0 1 4 1 0 21 chain 90111 chr20 63025520 + 57262025 57263000 L1PA2 6032 - 1 976 39608 975 chain 9822 chr20 63025520 + 57306057 57306198 MER30 238 - 3 160 161487 33 3 6 73 4 17 28 chain 26994 chr20 63025520 + 57325813 57326178 THE1B 368 + 0 368 96303 168 2 1 25 2 0 55 4 10 109 chain 32277 chr20 63025520 + 57332205 57332603 MLT2A1 477 + 0 401 80398 138 0 1 30 0 4 151 1 0 71 1 0 6 chain 56460 chr20 63025520 + 57332728 57333401 HERVL-int 5654 - 4968 5654 54874 392 0 13 281 chain 6780 chr20 63025520 + 57348168 57348326 L1MC5 759 + 208 353 179108 4 1 0 68 57 45 28 chain 9393 chr20 63025520 + 57424130 57424278 MER20 218 + 22 175 163595 51 8 13 5 1 0 61 7 8 15 chain 23170 chr20 63025520 + 57446398 57446699 AluSp 311 + 11 305 114814 269 1 2 16 8 0 7 chain 22414 chr20 63025520 + 57492571 57492841 AluY 311 + 11 311 118410 156 0 32 106 2 0 6 chain 91422 chr20 63025520 + 57523474 57524681 HSMAR1 1287 + 61 1284 39159 10 0 4 45 11 7 35 4 3 108 0 9 414 0 3 83 0 1 132 10 11 312 0 2 7 0 1 36 chain 32980 chr20 63025520 + 57529170 57530196 L1PB1 5432 + 4763 5430 79248 34 5 1 6 0 10 8 4 0 100 0 1 84 451 107 24 8 6 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 4 21 23 14 2 0 10 1 0 14 2 0 15 0 1 11 1 0 20 1 0 12 1 0 17 1 0 4 1 0 4 chain 26704 chr20 63025520 + 57532088 57532529 Tigger3b 1229 - 534 949 97310 64 0 1 33 9 20 6 2 0 43 29 0 89 1 2 4 1 0 98 2 0 7 1 0 37 5 1 10 chain 4867 chr20 63025520 + 57546961 57547135 MER58C 217 - 15 212 196623 37 104 127 33 chain 12030 chr20 63025520 + 57587372 57587524 MER41B 635 - 482 635 152077 26 0 1 126 chain 50570 chr20 63025520 + 57620812 57621444 PABL_A 660 - 0 660 58603 83 0 11 237 0 12 244 0 5 68 chain 24892 chr20 63025520 + 57635025 57635417 L1PA8 5853 + 5474 5853 105398 7 6 0 83 1 0 45 2 0 69 20 17 45 2 1 10 10 9 68 9 10 15 chain 24832 chr20 63025520 + 57656763 57657035 L1PA4 6152 + 5878 6151 105713 160 0 1 112 chain 8725 chr20 63025520 + 57665710 57665837 L1MB5 1630 - 837 968 167060 89 11 15 27 chain 6737 chr20 63025520 + 57676408 57676523 L1MC1 2226 - 1063 1174 179418 58 10 8 25 4 2 18 chain 29514 chr20 63025520 + 57723454 57723764 AluYg6 310 + 0 310 86591 310 chain 23745 chr20 63025520 + 57738108 57738398 L1PA17 2846 - 1231 1523 111810 92 1 0 12 0 2 181 0 1 4 chain 2660 chr20 63025520 + 57752456 57752496 L2a 937 + 642 681 230898 19 3 2 18 chain 3896 chr20 63025520 + 57754753 57754874 MLT1C 463 - 293 394 208909 5 2 0 14 55 37 45 chain 133990 chr20 63025520 + 57755419 57757035 L1PA8 5853 - 0 1711 27211 9 2 0 82 3 2 19 2 1 46 4 0 5 1 0 10 1 0 71 2 0 44 1 0 501 1 0 54 0 2 312 0 5 39 1 0 4 0 1 208 0 102 194 chain 19969 chr20 63025520 + 57785911 57786124 AluYb8 318 + 105 318 127241 213 chain 13813 chr20 63025520 + 57843147 57843407 L1PA15 4387 - 39 282 145209 20 19 12 46 17 14 39 2 1 8 4 0 23 1 0 55 1 0 25 chain 4011 chr20 63025520 + 57904650 57904704 MER21C 908 - 521 574 207224 44 1 0 9 chain 18512 chr20 63025520 + 57912555 57912755 AluYb8 318 - 19 216 131468 173 3 0 24 chain 16257 chr20 63025520 + 57920429 57920731 THE1C 375 - 51 375 137588 65 1 0 55 0 1 7 13 10 5 0 2 28 27 43 17 20 21 17 0 6 47 chain 33181 chr20 63025520 + 57984294 57984778 MER1A 529 + 2 529 78935 82 19 59 314 30 33 39 chain 6255 chr20 63025520 + 58011198 58011266 L1PA4 6152 + 6076 6144 183128 68 chain 21307 chr20 63025520 + 58038887 58039264 THE1D 372 + 0 372 122837 51 9 0 15 40 42 58 32 34 25 1 0 129 0 1 17 chain 28152 chr20 63025520 + 58050358 58050782 MER57A1 433 - 5 433 92456 57 16 17 20 32 34 23 0 1 276 chain 32585 chr20 63025520 + 58051611 58052397 MER4A 717 + 0 707 79882 70 0 15 8 182 23 58 10 89 10 0 2 62 0 17 35 8 18 15 60 18 18 7 14 21 5 0 121 4 0 27 12 13 53 chain 22342 chr20 63025520 + 58086481 58086758 L1PB1 5432 - 333 610 118737 277 chain 548402 chr20 63025520 + 58106835 58112857 L1PA3long 6157 - 0 6157 1652 5 2 0 696 0 4 1145 0 1 1043 0 1 85 0 1 2153 0 1 118 0 128 623 0 1 152 chain 34556 chr20 63025520 + 58126631 58127091 LTR2 463 - 0 463 76820 84 19 20 216 0 1 123 1 2 17 chain 379038 chr20 63025520 + 58127093 58131747 Harlequin-int 5206 - 3 5046 10788 423 0 9 761 1 0 330 6 0 115 20 21 57 0 2 5 0 1 4 3 0 19 0 1 480 1 0 208 6 8 497 7 6 99 11 10 775 3 0 79 2 1 118 17 7 160 1 0 306 0 1 24 17 417 99 chain 36083 chr20 63025520 + 58133482 58133944 LTR2 463 - 0 463 74780 88 12 13 57 14 14 291 chain 4820 chr20 63025520 + 58135313 58135393 MER53 195 + 8 89 197121 56 8 9 16 chain 7949 chr20 63025520 + 58145532 58145647 MER2 342 + 86 211 171331 24 1 0 38 5 16 47 chain 5200 chr20 63025520 + 58162724 58162787 MLT1E2 623 - 219 282 193024 63 chain 36688 chr20 63025520 + 58208221 58208666 L1PA8A 6298 + 5842 6291 73973 18 0 3 316 6 7 105 chain 3537 chr20 63025520 + 58237942 58237989 MLT1C 463 - 10 57 214756 47 chain 16412 chr20 63025520 + 58255617 58255831 MER30 238 + 0 238 137176 100 0 27 71 3 0 40 chain 3249 chr20 63025520 + 58303099 58303147 L1MB5 1630 - 11 57 220021 8 1 0 10 1 0 28 chain 13036 chr20 63025520 + 58331731 58331886 L1PA5 6144 - 0 158 148097 11 1 3 128 0 1 15 chain 18839 chr20 63025520 + 58335406 58335765 THE1B 368 + 1 366 130549 67 0 14 11 14 0 15 14 15 52 37 34 4 0 1 14 6 14 64 7 6 54 chain 16453 chr20 63025520 + 58357610 58357881 THE1B 368 - 62 368 137056 67 36 70 43 17 18 108 chain 9435 chr20 63025520 + 58363037 58363318 L1PB1 5432 - 8 273 163381 4 1 0 16 1 0 4 75 78 11 21 10 6 1 0 14 1 0 44 2 1 15 2 1 53 2 0 8 chain 15326 chr20 63025520 + 58366667 58366859 L1PA5 6144 - 21 216 140406 23 0 2 101 1 2 67 chain 3270 chr20 63025520 + 58427744 58427781 U7 62 - 23 60 219592 37 chain 29739 chr20 63025520 + 58427976 58428285 AluYb8 318 + 0 309 85694 309 chain 76548 chr20 63025520 + 58429788 58430644 L1PA4 6152 - 1496 2358 45149 256 0 2 46 0 4 554 chain 131783 chr20 63025520 + 58430644 58432118 L1PA4 6152 + 4660 6141 27676 61 1 0 579 0 5 698 0 1 125 0 2 10 chain 25773 chr20 63025520 + 58432973 58433313 MSTA-int 1630 + 1295 1630 101000 190 5 1 30 1 0 114 chain 58097 chr20 63025520 + 58462061 58462716 L1PA5 6144 - 3 662 53928 248 0 4 407 chain 58403 chr20 63025520 + 58464924 58465605 L1PA7 6471 + 5772 6462 53747 87 0 3 35 0 5 199 1 2 359 chain 46903 chr20 63025520 + 58473198 58473758 L1PA7 6471 + 5885 6452 61307 60 1 0 191 0 1 116 1 8 191 chain 73583 chr20 63025520 + 58531476 58532828 L1PB1 5432 - 8 1044 46745 4 1 0 15 2 0 14 1 0 21 1 0 24 2 0 14 8 5 19 26 14 14 1 0 43 2 1 15 2 1 53 2 0 9 16 11 9 1 0 24 1 0 6 284 0 185 0 1 300 0 1 233 chain 29970 chr20 63025520 + 58564301 58564618 AluYb8 318 + 0 317 84912 317 chain 29363 chr20 63025520 + 58604536 58604920 L1PA8 5853 - 0 378 87230 93 1 0 19 2 1 51 1 0 10 2 1 70 2 0 44 1 0 82 0 1 6 chain 19989 chr20 63025520 + 58605988 58606217 MER41A 554 - 87 316 127173 229 chain 45601 chr20 63025520 + 58607570 58608066 L1PA2 6032 + 5536 6032 62402 496 chain 75354 chr20 63025520 + 58616233 58617195 LTR5_Hs 974 - 0 974 45842 20 0 1 170 7 7 97 3 5 17 0 1 21 10 9 444 0 2 12 0 3 117 0 4 44 chain 45909 chr20 63025520 + 58674214 58674715 L1PA3long 6157 - 11 512 62124 501 chain 4319 chr20 63025520 + 58689204 58689363 MLT1C 463 + 57 221 202980 43 7 8 13 79 83 17 chain 39634 chr20 63025520 + 58760517 58760966 L1PA3long 6157 - 0 449 69849 449 chain 221108 chr20 63025520 + 58771904 58775122 L1PA10 4194 - 33 4019 17808 11 1 0 29 8 5 29 6 5 294 0 3 141 1 2 46 6 7 81 0 1 332 0 1 32 0 1 41 20 12 175 0 1 237 0 4 14 1 0 7 21 26 140 3 7 55 6 8 187 1 5 67 0 4 447 18 14 161 6 7 66 14 843 24 2 1 61 0 3 36 2 0 56 9 1 17 1 0 11 1 0 8 10 0 15 1 0 15 8 1 8 1 0 21 70 41 8 1 0 15 2 0 20 16 14 5 2 0 9 11 7 9 3 1 6 3 0 11 2 0 14 chain 7905 chr20 63025520 + 58801286 58801416 MER2 342 + 157 320 171613 89 22 55 19 chain 70405 chr20 63025520 + 58857530 58858304 L1PA3long 6157 - 4 774 48212 391 4 0 379 chain 21612 chr20 63025520 + 58898708 58898996 AluSp 311 - 18 301 121723 8 5 0 174 1 2 56 6 5 38 chain 4278 chr20 63025520 + 58908151 58908217 MER58A 224 - 66 124 203497 9 8 0 49 chain 28836 chr20 63025520 + 58926728 58927041 AluYb8 318 + 0 313 89743 123 1 0 106 0 1 83 chain 17733 chr20 63025520 + 58931515 58931726 MLT2A1 477 - 54 267 133613 38 0 2 173 chain 4453 chr20 63025520 + 58931866 58931938 MLT2A1 477 + 138 207 201312 31 4 1 9 0 1 23 1 0 4 chain 180019 chr20 63025520 + 58942616 58944793 L1PA7 6471 - 1 2325 20990 127 0 13 577 0 1 136 1 0 623 9 8 65 0 135 375 1 0 148 0 1 115 chain 5658 chr20 63025520 + 58971529 58971693 L1PB1 5432 + 5267 5410 188491 14 1 0 4 0 1 7 57 41 12 2 0 24 1 0 21 1 0 13 1 0 6 chain 11669 chr20 63025520 + 59009417 59009739 THE1D 372 + 19 357 153604 18 18 9 28 3 0 6 19 23 24 5 9 30 31 41 17 1 0 20 5 20 20 0 1 27 30 25 20 chain 3368 chr20 63025520 + 59025429 59025528 MER67D 511 + 392 481 217711 26 49 39 24 chain 142512 chr20 63025520 + 59089134 59090717 L1PA2 6032 + 4444 6029 25726 346 0 1 621 1 2 615 chain 67509 chr20 63025520 + 59099520 59100304 L1PA7 6471 + 5683 6470 49442 26 0 1 431 0 5 306 1 0 13 2 0 5 chain 36815 chr20 63025520 + 59106750 59107185 L1PA6 6164 + 5718 6160 73784 292 2 9 141 chain 12953 chr20 63025520 + 59111395 59112053 MER50 708 - 22 554 148415 109 399 75 17 60 260 7 0 1 42 3 0 21 chain 12990 chr20 63025520 + 59118672 59118886 L1MA3 4352 - 24 233 148281 11 1 0 25 5 4 5 1 0 13 14 12 139 chain 23600 chr20 63025520 + 59132832 59133107 L1PA5 6144 - 0 274 112590 166 1 0 108 chain 36805 chr20 63025520 + 59153739 59154200 LTR2 463 + 0 463 73796 269 0 1 92 12 13 88 chain 45684 chr20 63025520 + 59154200 59154793 MER4D1 891 - 240 833 62330 77 3 1 118 0 1 24 1 0 10 6 7 326 1 2 27 chain 6879 chr20 63025520 + 59175271 59175356 MSTB 430 - 334 419 178363 85 chain 294630 chr20 63025520 + 59190790 59193977 L1PA2 6032 - 10 3197 13720 772 1 0 2201 0 1 213 chain 26804 chr20 63025520 + 59240440 59241140 L1PB1 5432 + 4939 5427 96967 162 189 8 4 0 1 24 1 0 9 1 0 9 2 0 3 2 0 8 2 0 53 2 1 16 1 0 40 6 5 14 2 0 6 62 47 21 1 0 17 9 8 9 1 0 19 1 0 4 chain 27782 chr20 63025520 + 59247947 59248342 MER4A1 472 - 0 472 93762 139 8 60 25 7 29 196 1 2 5 0 2 14 chain 21302 chr20 63025520 + 59254914 59255220 L1PA8 5853 - 5 304 122853 87 2 1 19 2 1 44 10 9 5 1 0 71 7 5 42 1 0 15 chain 82981 chr20 63025520 + 59283066 59283989 L1PA3long 6157 + 5218 6146 42345 70 0 4 839 1 2 13 chain 3941 chr20 63025520 + 59309161 59309208 MER5A1 166 + 0 47 208257 47 chain 46656 chr20 63025520 + 59318674 59319207 L1PA4 6152 + 5618 6151 61492 29 0 1 426 1 0 77 chain 29270 chr20 63025520 + 59373637 59373947 AluYa5 310 - 0 310 87690 310 chain 44656 chr20 63025520 + 59428237 59428771 L1PA5 6144 - 0 529 63427 199 8 3 327 chain 53539 chr20 63025520 + 59433417 59434021 L1PA3long 6157 + 5552 6157 56654 286 0 1 318 chain 17378 chr20 63025520 + 59434925 59435144 Charlie3 2679 - 32 251 134568 18 1 0 196 0 1 4 chain 43419 chr20 63025520 + 59437198 59437681 L1PA4 6152 + 5668 6151 64909 483 chain 5157 chr20 63025520 + 59466495 59466588 MER58A 224 - 77 174 193477 28 21 25 44 chain 2621 chr20 63025520 + 59470774 59470868 HAL1-2a_MD 234 - 3 55 231420 9 4 0 19 32 0 10 7 1 13 chain 59216 chr20 63025520 + 59484527 59485276 L1PA8 5853 - 0 750 53274 93 1 0 19 2 1 49 14 12 71 2 0 44 1 0 39 0 3 151 0 3 90 1 3 172 chain 12735 chr20 63025520 + 59492223 59492408 MER30 238 - 1 202 149308 37 3 0 70 6 25 15 1 0 6 0 1 47 chain 8891 chr20 63025520 + 59501182 59501304 L1PA16 3655 - 105 228 166178 102 1 2 19 chain 134536 chr20 63025520 + 59557034 59558524 L1PA4 6152 - 1 1492 27102 717 0 1 773 chain 18396 chr20 63025520 + 59639254 59639499 L1PB2 3958 - 120 360 131803 63 1 0 22 2 0 74 1 0 62 1 0 19 chain 13345 chr20 63025520 + 59666538 59666693 L1PA6 6164 - 2 157 146911 155 chain 35098 chr20 63025520 + 59670483 59670931 Charlie3 2679 - 8 454 76052 59 13 9 245 0 2 131 chain 17604 chr20 63025520 + 59722261 59722458 L1PA5 6144 - 16 213 133983 197 chain 2838 chr20 63025520 + 59731849 59731879 MLT1D 503 + 405 435 228108 30 chain 37941 chr20 63025520 + 59766663 59767282 HERVIP10FH-int 2884 - 2095 2716 72221 5 3 0 53 9 10 84 1 0 4 0 4 40 0 1 34 0 1 144 0 1 8 8 0 29 55 62 87 11 9 25 4 5 15 chain 3107 chr20 63025520 + 59819062 59819171 L1MC2 1988 + 1889 1983 222786 15 60 45 34 chain 3631 chr20 63025520 + 59897026 59897067 MIRb 242 - 100 141 213123 41 chain 45373 chr20 63025520 + 59941427 59941938 MER9a2 513 - 0 513 62629 253 0 2 258 chain 3770 chr20 63025520 + 59949639 59949688 MER4B 649 + 0 47 210811 25 2 0 22 chain 31170 chr20 63025520 + 59958900 59959332 MLT2A1 477 - 66 477 82222 6 4 0 7 4 0 7 4 0 7 9 1 179 0 1 23 0 1 8 3 0 171 chain 29488 chr20 63025520 + 59974175 59974487 AluYb8 318 - 6 318 86678 312 chain 25108 chr20 63025520 + 59997202 59997509 AluSp 311 + 2 311 104239 78 6 8 223 chain 27460 chr20 63025520 + 60028793 60029128 THE1C 375 + 0 338 94783 201 0 3 134 chain 24454 chr20 63025520 + 60054272 60054538 L1PA4 6152 - 14 280 107782 266 chain 13610 chr20 63025520 + 60054538 60054685 L1PA4 6152 + 5671 5818 145933 147 chain 66169 chr20 63025520 + 60072535 60073273 L1PA5 6144 + 5406 6144 50017 738 chain 12238 chr20 63025520 + 60073726 60073898 MER30 238 - 11 205 151263 67 1 7 24 4 20 76 chain 14341 chr20 63025520 + 60101554 60101717 L1PA3long 6157 - 0 161 143421 5 2 0 156 chain 5131 chr20 63025520 + 60136677 60136832 MER58A 224 + 37 208 193775 50 79 95 26 chain 19603 chr20 63025520 + 60143239 60143560 THE1C 375 + 12 341 128376 55 1 15 8 14 0 18 6 7 23 1 5 38 19 18 103 0 4 35 chain 5515 chr20 63025520 + 60150672 60150737 MER58A 224 + 42 107 189901 65 chain 8178 chr20 63025520 + 60164724 60164819 L1PA2 6032 - 62 157 170076 95 chain 3460 chr20 63025520 + 60193386 60193466 MER72B 755 - 669 754 216000 31 29 34 20 chain 3114 chr20 63025520 + 60210331 60210390 L1MB3 1562 - 597 662 222665 27 9 15 23 chain 133238 chr20 63025520 + 60228009 60229511 SVA_D 2077 - 16 2058 27386 606 0 1 9 0 2 17 0 575 302 40 0 494 0 2 34 chain 2970 chr20 63025520 + 60249932 60249966 MER58A 224 + 50 84 225681 34 chain 3054 chr20 63025520 + 60290433 60290687 MSTD 398 - 78 398 223930 23 168 167 15 9 64 16 4 16 19 chain 27032 chr20 63025520 + 60329971 60330323 THE1A 353 - 0 353 96176 91 1 2 78 3 4 68 1 0 110 chain 25815 chr20 63025520 + 60345660 60345952 AluY 311 + 3 296 100809 129 0 1 163 chain 3239 chr20 63025520 + 60350597 60350635 MER58A 224 - 141 179 220260 38 chain 29175 chr20 63025520 + 60418224 60418534 AluYb8 318 + 0 310 88179 310 chain 3517 chr20 63025520 + 60425260 60425302 MIR 256 + 98 140 215100 42 chain 3507 chr20 63025520 + 60517347 60517385 MIRb 242 - 108 146 215241 38 chain 91238 chr20 63025520 + 60530146 60531438 L1PB3 3668 + 1842 3177 39219 68 1 3 88 19 32 81 3 0 56 0 1 34 0 4 109 1 0 23 0 1 128 0 1 28 0 1 82 22 45 38 1 0 33 7 8 279 0 2 15 1 0 4 11 10 68 1 2 91 chain 41588 chr20 63025520 + 60531438 60532017 LTR61 567 - 0 567 67172 54 3 0 101 0 1 42 13 1 151 0 3 19 0 2 77 16 1 49 0 11 29 0 1 25 chain 6787 chr20 63025520 + 60535183 60535301 MER51E 476 + 364 476 179064 21 30 0 21 0 24 46 chain 30185 chr20 63025520 + 60570638 60570952 AluYb9 318 + 1 315 84232 314 chain 129879 chr20 63025520 + 60646143 60647610 L1PA5 6144 + 4662 6140 28113 206 0 4 336 3 0 83 0 4 418 0 6 421 chain 40145 chr20 63025520 + 60648025 60648566 MLT2A2 560 + 0 552 69120 221 13 15 70 9 14 204 0 4 24 chain 13043 chr20 63025520 + 60657547 60657889 THE1D 372 + 0 327 148068 13 0 2 17 1 0 24 101 86 24 46 45 116 chain 4712 chr20 63025520 + 60665867 60665917 MSTC 436 - 0 50 198363 50 chain 4875 chr20 63025520 + 60668324 60668382 MLT1A0-int 1658 + 1356 1414 196546 58 chain 3641 chr20 63025520 + 60686086 60686131 MSTA 426 + 381 426 212950 45 chain 22590 chr20 63025520 + 60686539 60686813 AluY 311 + 0 292 117627 48 1 17 61 0 2 164 chain 16991 chr20 63025520 + 60728066 60728381 THE1C 375 - 45 362 135614 96 4 6 30 28 29 55 38 37 64 chain 8032 chr20 63025520 + 60733457 60733553 Tigger4a 237 + 40 136 170860 96 chain 23741 chr20 63025520 + 60755674 60755958 AluSp 311 + 5 289 111825 284 chain 24781 chr20 63025520 + 60915357 60915654 AluSp 311 - 2 299 105989 297 chain 7596 chr20 63025520 + 60920384 60920465 L1PA2 6032 - 3 84 173569 81 chain 22477 chr20 63025520 + 60955352 60955613 AluY 311 + 33 295 118122 99 0 1 162 chain 4186 chr20 63025520 + 60957280 60957330 HAL1-2a_MD 234 - 127 177 204757 50 chain 2820 chr20 63025520 + 61184621 61184651 MER70B 575 + 48 78 228473 30 chain 8305 chr20 63025520 + 61210087 61210198 L1MA4 2864 - 255 365 169367 94 2 1 15 chain 22037 chr20 63025520 + 61285147 61285402 L1PA5 6144 + 5889 6144 120079 255 chain 3818 chr20 63025520 + 61380431 61380511 L1MA9 1812 + 905 988 210114 17 22 25 41 chain 24560 chr20 63025520 + 61390853 61391141 AluY 311 + 9 297 107189 117 0 1 23 7 6 141 chain 29826 chr20 63025520 + 61413078 61413970 MER51A 677 + 5 677 85361 18 1 3 31 14 7 75 0 15 23 404 176 10 0 1 60 3 4 33 0 1 51 1 0 9 6 14 28 0 1 74 5 6 19 14 0 13 chain 2525 chr20 63025520 + 61413240 61413268 MER51A 677 + 384 412 232836 28 chain 4764 chr20 63025520 + 61422584 61422646 MER53 195 - 129 193 197767 47 0 2 15 chain 82432 chr20 63025520 + 61504900 61505891 LTR13 1007 + 0 1007 42570 68 2 0 93 7 21 199 4 5 302 8 0 11 0 11 297 chain 8353 chr20 63025520 + 61775442 61775573 HSMAR2 1300 - 1142 1278 169104 82 19 23 13 0 1 17 chain 4744 chr20 63025520 + 61844166 61844237 MER20 218 + 91 161 197983 21 5 4 45 chain 41339 chr20 63025520 + 61863206 61863754 MER41A 554 - 0 553 67482 79 1 6 38 1 2 178 2 9 186 8 0 55 chain 71364 chr20 63025520 + 61882314 61883216 LTR13 1007 - 102 1006 47761 93 0 1 100 28 28 297 4 5 113 0 2 193 2 0 72 chain 4284 chr20 63025520 + 61968706 61968776 U6 107 + 13 82 203422 50 8 7 12 chain 54388 chr20 63025520 + 61972149 61972871 MER4E 760 + 2 750 56106 18 2 3 147 13 9 85 0 1 20 0 4 74 1 3 36 1 0 109 0 21 53 0 1 51 0 1 112 chain 7229 chr20 63025520 + 62023902 62024009 MER83 447 - 48 154 175896 55 0 1 6 12 10 34 chain 5012 chr20 63025520 + 62068431 62068519 Tigger1 2417 + 2296 2387 195006 60 16 19 12 chain 3035 chr20 63025520 + 62074601 62074643 HAL1-2a_MD 234 + 85 124 224306 28 3 0 11 chain 6138 chr20 63025520 + 62146449 62146522 MSTA 426 - 317 391 184094 5 0 1 68 chain 31868 chr20 63025520 + 62155109 62155872 LTR10A 586 - 12 537 81068 30 0 5 251 2 7 44 320 35 61 1 0 17 10 39 10 0 1 7 0 8 10 chain 56879 chr20 63025520 + 62245420 62246126 LTR13 1007 + 0 683 54612 70 2 0 111 30 8 192 4 5 297 chain 24253 chr20 63025520 + 62260563 62260845 AluY 311 + 5 288 108921 127 0 1 155 chain 26427 chr20 63025520 + 62269045 62269347 AluYk4 311 - 11 311 98317 6 2 0 294 chain 8311 chr20 63025520 + 62288651 62288748 THE1D 372 - 275 372 169331 97 chain 82643 chr20 63025520 + 62291042 62292027 LTR5B 1012 - 0 1012 42487 8 0 2 88 0 2 162 0 2 297 0 3 299 0 14 123 0 4 8 chain 116120 chr20 63025520 + 62428360 62429702 L1PA5 6144 - 0 1352 32409 13 1 0 15 1 0 151 7 12 717 0 2 87 0 5 350 chain 102336 chr20 63025520 + 62431732 62433177 LTR12C 1709 + 0 1709 36187 23 1 0 239 0 1 14 0 17 53 0 7 47 0 1 62 10 9 11 25 31 204 0 118 231 32 80 59 24 0 8 20 13 218 2 102 79 1 0 82 chain 26214 chr20 63025520 + 62440048 62440358 AluY 311 + 3 311 99144 120 1 0 3 2 0 24 0 1 160 chain 6351 chr20 63025520 + 62448055 62448141 MLT1C 463 + 67 147 182365 57 6 0 23 chain 29639 chr20 63025520 + 62458678 62458993 AluYb8 318 + 0 314 86100 132 1 0 182 chain 2962 chr20 63025520 + 62491476 62491517 MER53 195 - 28 65 225850 30 4 0 7 chain 24937 chr20 63025520 + 62497469 62497754 AluSc 308 - 22 307 105125 285 chain 25317 chr20 63025520 + 62517718 62518001 AluYc3 301 - 17 301 103137 169 1 2 113 chain 12708 chr20 63025520 + 62540307 62540459 U1 164 + 0 151 149426 139 1 0 12 chain 21086 chr20 63025520 + 62540608 62540860 AluY 311 + 38 287 123587 44 0 1 42 5 1 161 chain 74752 chr20 63025520 + 62547599 62548581 MER11A 1151 - 0 1151 46136 116 4 5 58 0 1 53 0 1 33 0 49 153 6 9 126 0 7 9 1 4 199 0 2 8 1 5 19 1 0 140 10 109 45 chain 27140 chr20 63025520 + 62625498 62625810 AluSp 311 - 0 311 95790 286 1 0 25 chain 4266 chr20 63025520 + 62645672 62645725 MER47A 366 - 31 84 203681 53 chain 24868 chr20 63025520 + 62707238 62707522 AluSp 311 - 16 300 105525 284 chain 3460 chr20 63025520 + 62728316 62728484 HAL1-2a_MD 234 + 22 118 216002 5 3 0 12 12 0 16 0 3 7 70 1 15 8 17 20 chain 4032 chr20 63025520 + 62754355 62754409 MER4D 903 - 20 74 206891 11 1 0 23 0 1 19 chain 49933 chr20 63025520 + 62884957 62885617 PABL_A 660 + 0 660 59068 127 1 0 79 2 1 71 24 25 102 0 1 254 chain 3890 chr20 63025520 + 62913467 62913517 MER72 723 - 0 54 209024 44 0 4 6 chain 38491 chr20 63025520 + 62961801 62962263 LTR2 463 - 0 463 71451 88 14 15 360 chain 177267 chr20 63025520 + 62962610 62965515 L1PB1 5432 - 6 2568 21225 7 1 0 9 7 6 11 1 0 23 1 0 24 2 0 12 11 8 14 22 11 21 1 0 44 7 6 9 2 1 51 3 1 9 2 0 3 2 0 12 1 0 10 3 43 74 0 2 5 2 0 8 3 0 243 364 0 51 1 0 43 0 1 36 3 0 78 0 1 82 1 2 14 0 6 40 0 1 156 1 0 260 0 3 15 9 8 241 1 0 348 1 0 8 0 1 59 13 12 27 0 10 50 8 6 192 0 1 143 chain 3234 chrY 59373566 + 10224 10259 LTR12D 1347 + 1142 1177 220359 35 chain 3836 chrY 59373566 + 10325 10369 LTR12D 1347 + 1111 1155 209837 44 chain 36074 chrY 59373566 + 11799 12245 LTR6B 557 + 0 446 74793 359 0 1 40 1 0 46 chain 38573 chrY 59373566 + 23328 24257 LTR2C 499 + 6 478 71335 176 1 4 71 459 0 178 1 0 43 chain 38667 chrY 59373566 + 102063 102992 LTR2C 499 + 6 478 71198 176 1 4 71 459 0 178 1 0 43 chain 21165 chrY 59373566 + 104178 104442 AluSp 311 + 17 282 123326 98 0 3 14 2 0 150 chain 6019 chrY 59373566 + 116388 116488 MER4D0 881 + 1 103 185061 47 8 9 31 3 4 11 chain 54877 chrY 59373566 + 117837 118808 LTR5A 1029 - 0 1027 55785 60 2 1 11 1 2 117 223 267 9 0 2 17 6 5 32 2 1 13 1 0 329 0 13 148 chain 5183 chrY 59373566 + 146088 146154 MER4B 649 - 227 292 193205 16 1 0 49 chain 4934 chrY 59373566 + 149761 149815 LTR9B 643 - 63 117 195879 54 chain 7385 chrY 59373566 + 149856 149940 AluSp 311 + 211 295 174868 84 chain 9611 chrY 59373566 + 158696 158817 AluSx 319 + 10 133 162533 54 0 2 67 chain 28387 chrY 59373566 + 294293 294601 AluY 311 + 3 311 91632 308 chain 24950 chrY 59373566 + 307982 308283 AluY 311 + 0 297 105057 33 0 1 99 6 1 163 chain 3358 chrY 59373566 + 313174 313212 tRNA-Gln-CAG 43 - 4 42 217909 38 chain 7568 chrY 59373566 + 320097 320250 THE1B 368 + 153 307 173747 16 31 30 15 0 4 14 1 0 6 7 6 63 chain 6234 chrY 59373566 + 328569 328642 MER41C 542 - 241 314 183288 73 chain 24449 chrY 59373566 + 341391 341692 AluY 311 + 0 291 107808 64 2 0 64 3 0 157 5 0 6 chain 12506 chrY 59373566 + 344950 345101 L1PA5 6144 - 2 153 149883 151 chain 54327 chrY 59373566 + 345101 345727 L1PA3long 6157 + 5487 6142 56147 424 0 5 131 0 24 71 chain 23568 chrY 59373566 + 364857 365119 AluY 311 + 38 301 112751 94 0 1 168 chain 19224 chrY 59373566 + 365296 365526 L1PA7 6471 - 207 436 129455 223 1 0 6 chain 23717 chrY 59373566 + 365672 365956 L1PA7 6471 + 6065 6349 111954 284 chain 4732 chrY 59373566 + 374829 374887 L1PA16 3655 + 3403 3461 198144 58 chain 34181 chrY 59373566 + 382961 383402 L1PA8 5853 + 5251 5688 77374 263 13 13 37 1 0 44 2 0 74 1 0 6 chain 46778 chrY 59373566 + 387734 388288 LTR6B 557 - 0 557 61389 10 1 0 119 2 1 105 0 6 266 1 0 50 chain 20111 chrY 59373566 + 405555 405823 AluSc8 310 + 15 287 126793 116 13 14 7 0 3 132 chain 65975 chrY 59373566 + 419426 420208 L1PA7 6471 - 4 784 50114 764 1 0 12 1 0 4 chain 50083 chrY 59373566 + 421792 422389 L1PA7 6471 + 5871 6470 58956 147 0 1 302 5 6 143 chain 7240 chrY 59373566 + 429421 429502 L1PA4 6152 - 1 82 175828 81 chain 9469 chrY 59373566 + 429593 429715 L1PA7 6471 - 1 120 163221 12 1 0 58 2 0 49 chain 24442 chrY 59373566 + 429810 430102 AluY 311 + 15 306 107844 116 0 2 17 3 0 156 chain 70518 chrY 59373566 + 431019 431894 L1PA7 6471 + 5593 6469 48152 29 3 6 74 0 1 7 2 0 73 2 3 534 1 0 118 0 1 20 2 0 10 chain 53520 chrY 59373566 + 477869 478481 L1PA4 6152 - 0 612 56665 612 chain 37644 chrY 59373566 + 508191 510584 LTR7B 505 - 11 505 72631 19 0 1 222 4 25 26 1921 0 201 chain 5581 chrY 59373566 + 508559 508635 LTR7B 505 - 177 253 189265 4 0 1 38 1 0 33 chain 2847 chrY 59373566 + 508639 508669 LTR7B 505 - 278 308 227896 30 chain 2074 chrY 59373566 + 508675 508697 LTR7B 505 - 226 248 237919 22 chain 2447 chrY 59373566 + 508705 508731 LTR7B 505 - 278 304 233730 26 chain 5667 chrY 59373566 + 508731 508802 LTR7B 505 - 182 253 188414 71 chain 2633 chrY 59373566 + 508806 508836 LTR7B 505 - 278 308 231221 30 chain 4963 chrY 59373566 + 508913 508970 LTR7B 505 - 196 253 195556 57 chain 2847 chrY 59373566 + 508974 509004 LTR7B 505 - 278 308 227895 30 chain 5789 chrY 59373566 + 509067 509138 LTR7B 505 - 182 253 187261 71 chain 2847 chrY 59373566 + 509142 509172 LTR7B 505 - 278 308 227894 30 chain 2074 chrY 59373566 + 509212 509234 LTR7B 505 - 226 248 237918 22 chain 2447 chrY 59373566 + 509242 509268 LTR7B 505 - 278 304 233729 26 chain 5298 chrY 59373566 + 509268 509334 LTR7B 505 - 182 248 192031 66 chain 2691 chrY 59373566 + 509336 509373 LTR7B 505 - 249 308 230327 7 0 22 30 chain 4963 chrY 59373566 + 509450 509507 LTR7B 505 - 196 253 195557 57 chain 2847 chrY 59373566 + 509511 509541 LTR7B 505 - 278 308 227893 30 chain 3380 chrY 59373566 + 509628 509665 LTR7B 505 - 205 242 217474 37 chain 5789 chrY 59373566 + 509672 509743 LTR7B 505 - 182 253 187260 71 chain 2847 chrY 59373566 + 509747 509777 LTR7B 505 - 278 308 227892 30 chain 5667 chrY 59373566 + 510076 510147 LTR7B 505 - 182 253 188413 71 chain 2847 chrY 59373566 + 510151 510181 LTR7B 505 - 278 308 227891 30 chain 3567 chrY 59373566 + 510279 510319 LTR7B 505 - 216 256 214169 40 chain 6506 chrY 59373566 + 523766 523936 L1PB1 5432 - 145 322 181192 6 1 0 16 0 1 5 23 39 52 2 0 7 9 5 10 5 4 4 1 0 24 1 0 4 chain 9319 chrY 59373566 + 532395 532510 L1PA5 6144 + 6013 6128 163960 115 chain 25200 chrY 59373566 + 567302 567595 AluY 311 + 8 300 103739 121 1 0 171 chain 16936 chrY 59373566 + 579725 579978 L1PA8 5853 - 12 259 135762 81 1 0 16 1 0 35 17 9 8 0 7 6 1 0 71 2 0 14 chain 49970 chrY 59373566 + 579978 580617 L1PA7 6471 + 5821 6459 59040 30 22 22 429 1 0 157 chain 50704 chrY 59373566 + 594708 595299 LTR10C 591 - 0 591 58500 591 chain 32886 chrY 59373566 + 601626 602020 L1PA4 6152 + 5749 6143 79386 249 7 0 8 0 7 130 chain 52844 chrY 59373566 + 629710 630324 L1PA7 6471 - 2 615 57106 17 1 0 596 chain 4840 chrY 59373566 + 653409 653474 MLT2B4 540 + 351 415 196885 40 1 0 24 chain 49989 chrY 59373566 + 670632 671252 L1PA7 6471 + 5851 6468 59019 365 0 1 244 4 0 7 chain 8260 chrY 59373566 + 701961 702063 L1PA3long 6157 + 6055 6157 169628 102 chain 32048 chrY 59373566 + 716992 717460 LTR7B 505 + 0 498 80782 175 50 81 20 2 4 63 2 0 16 1 0 139 chain 5119 chrY 59373566 + 731877 731935 L1PA6 6164 + 5858 5916 193876 58 chain 32319 chrY 59373566 + 733658 734054 L1PA7 6471 - 6 399 80332 6 2 0 136 2 1 250 chain 34412 chrY 59373566 + 746434 746882 L1PA7 6471 - 4 446 77041 143 7 4 10 4 3 148 2 0 134 chain 3498 chrY 59373566 + 747195 747238 L1PA16 3655 + 3245 3288 215386 43 chain 47592 chrY 59373566 + 766604 767136 L1PA7 6471 + 5908 6440 60772 532 chain 15289 chrY 59373566 + 777971 778150 L1PA3long 6157 - 0 179 140514 179 chain 25756 chrY 59373566 + 793240 793542 AluY 311 + 0 296 101053 118 7 0 14 0 1 163 chain 34516 chrY 59373566 + 810358 810801 L1PA8 5853 - 6 442 76883 87 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 153 chain 49795 chrY 59373566 + 840224 840869 L1PA8 5853 - 0 637 59160 93 1 0 19 3 2 37 14 10 13 2 1 70 2 0 42 3 2 161 0 1 134 0 1 51 chain 46330 chrY 59373566 + 868419 869031 L1PA8 5853 - 63 667 61743 30 1 0 19 2 1 47 2 0 14 15 14 57 2 0 46 1 0 376 chain 26707 chrY 59373566 + 875185 875509 L1PA7 6471 - 10 333 97296 138 2 1 184 chain 17812 chrY 59373566 + 889943 890160 AluSp 311 + 69 285 133362 63 1 0 153 chain 17884 chrY 59373566 + 892908 893197 LTR6A 649 - 359 649 133152 185 1 0 11 14 15 33 23 24 22 chain 41933 chrY 59373566 + 898281 898781 LTR5_Hs 974 - 46 549 66712 68 8 7 390 1 5 33 chain 5401 chrY 59373566 + 899184 899250 MER41C 542 - 228 294 190975 66 chain 68484 chrY 59373566 + 935324 936114 L1PA4 6152 + 5361 6151 49051 423 2 0 5 0 2 360 chain 23321 chrY 59373566 + 941435 941718 AluSg 306 + 11 294 114082 283 chain 12308 chrY 59373566 + 976931 977088 L1PA7 6471 + 6311 6467 150981 35 8 7 114 chain 32641 chrY 59373566 + 992712 993147 LTR7 482 + 0 475 79780 103 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 31962 chrY 59373566 + 1055100 1055527 LTR7 482 + 8 475 80916 95 5 0 7 0 5 50 0 5 60 0 31 158 12 14 30 0 2 10 chain 3834 chrY 59373566 + 1292288 1292336 MLT1H1 527 - 105 152 209874 32 1 0 15 chain 6658 chrY 59373566 + 1303512 1303610 MER4E1 777 + 346 440 180026 75 9 5 14 chain 147662 chrY 59373566 + 1303939 1305935 SVA_D 2077 + 316 2075 24927 592 50 0 6 1 0 33 110 0 4 0 1 93 48 0 10 49 0 165 1 0 127 1 0 35 31 6 13 4 0 32 0 49 38 0 3 14 6 9 85 0 2 133 1 0 303 5 0 6 chain 2960 chrY 59373566 + 1304532 1304573 SVA_D 2077 + 908 947 69118 8 3 1 30 chain 4477 chrY 59373566 + 1304621 1304683 SVA_D 2077 + 985 1047 69118 62 chain 3325 chrY 59373566 + 1304683 1304731 SVA_D 2077 + 947 996 63532 4 0 1 44 chain 1940 chrY 59373566 + 1304828 1304856 SVA_D 2077 + 1094 1123 63532 8 0 1 20 chain 2148 chrY 59373566 + 1305264 1305295 SVA_D 2077 + 1480 1511 63532 31 chain 7234 chrY 59373566 + 1325610 1325727 MER4B 649 - 305 420 175867 26 19 17 72 chain 20726 chrY 59373566 + 1331614 1331894 AluY 311 + 19 299 124870 31 0 1 77 25 26 132 2 0 13 chain 43967 chrY 59373566 + 1334332 1334827 L1PA4 6152 - 1 496 64240 495 chain 11287 chrY 59373566 + 1342012 1342147 MER4E1 777 + 12 147 155105 135 chain 21713 chrY 59373566 + 1345721 1345991 AluSc5 308 + 10 279 121340 247 2 1 21 chain 9042 chrY 59373566 + 1349395 1349501 MER4E 760 - 182 288 165364 106 chain 39391 chrY 59373566 + 1401191 1401667 L1PA7 6471 - 8 489 70179 6 0 5 239 1 0 194 0 1 36 chain 20869 chrY 59373566 + 1413781 1414043 AluY 311 + 8 265 124394 118 6 0 80 1 2 57 chain 3708 chrY 59373566 + 1506456 1506500 MLT1A0 366 - 16 60 211835 44 chain 29333 chrY 59373566 + 1529927 1530306 MLT2A1 477 + 0 373 87385 129 5 1 39 4 1 11 0 1 191 chain 25934 chrY 59373566 + 1549411 1549723 L1PA7 6471 + 6156 6469 100280 38 0 1 274 chain 33519 chrY 59373566 + 1551611 1551979 L1PA4 6152 + 5766 6134 78371 368 chain 25498 chrY 59373566 + 1573743 1574046 AluY 311 + 0 298 102226 123 3 0 7 2 0 168 chain 12315 chrY 59373566 + 1581459 1581648 THE1B 368 - 30 228 150958 98 1 0 10 1 0 16 0 1 4 14 25 15 1 0 29 chain 32443 chrY 59373566 + 1581759 1582224 L1PA8 5853 - 0 458 80124 93 1 0 19 2 1 46 1 0 6 2 1 5 1 0 74 10 8 29 11 12 85 2 1 78 chain 38349 chrY 59373566 + 1600691 1601605 L1PB1 5432 + 4705 5276 71649 277 40 5 112 293 0 15 13 0 16 28 30 7 2 0 53 2 1 16 1 0 39 chain 6099 chrY 59373566 + 1604965 1605035 MER85 139 + 16 86 184421 70 chain 43740 chrY 59373566 + 1632979 1633509 L1PA5 6144 + 5617 6142 64520 371 8 6 141 3 0 7 chain 23739 chrY 59373566 + 1674115 1674423 AluSg7 307 - 2 307 111838 11 5 0 18 15 17 259 chain 9733 chrY 59373566 + 1688312 1688442 L1PA8 5853 + 5703 5849 161923 33 8 24 89 chain 3085 chrY 59373566 + 1698897 1698935 MER74A 558 + 8 47 223228 21 0 1 17 chain 26749 chrY 59373566 + 1701573 1701908 L1PA6 6164 + 5832 6159 97165 171 8 0 156 chain 31795 chrY 59373566 + 1722841 1723217 MER41A 554 + 0 376 81178 376 chain 15996 chrY 59373566 + 1729434 1729651 AluSz 310 + 20 236 138359 89 12 11 116 chain 12324 chrY 59373566 + 1740483 1740643 LTR7B 505 + 267 426 150913 146 2 1 12 chain 23639 chrY 59373566 + 1746871 1747160 AluSx1 309 + 9 297 112364 273 1 0 15 chain 99810 chrY 59373566 + 1751264 1752470 L1PA7 6471 - 12 1220 36823 137 1 2 332 0 3 157 0 1 42 6 0 168 0 3 363 chain 36042 chrY 59373566 + 1755052 1755461 L1PA4 6152 + 5742 6151 74845 409 chain 18142 chrY 59373566 + 1758462 1758661 L1PA2 6032 - 0 199 132493 199 chain 22739 chrY 59373566 + 1760396 1760653 L1PA6 6164 + 5644 5901 116874 257 chain 18792 chrY 59373566 + 1761203 1761448 L1PA7 6471 + 6215 6469 130704 22 0 4 67 0 7 135 1 0 8 1 0 11 chain 8227 chrY 59373566 + 1765115 1765539 L1MA8 2339 - 193 446 169795 22 19 7 18 63 39 46 6 5 21 13 11 13 6 5 9 1 0 9 12 8 22 126 0 18 chain 21179 chrY 59373566 + 1769331 1769662 L1PA8 5853 - 0 337 123280 85 9 8 19 2 1 11 7 19 22 2 1 5 1 0 16 0 1 56 2 0 45 1 0 48 chain 545801 chrY 59373566 + 1772672 1778679 L1PA2 6032 - 9 6029 1978 8 0 3 750 2 1 818 1 0 701 1 0 634 0 4 48 0 1 70 1 0 299 0 1 961 0 5 682 0 3 778 1 0 183 1 2 68 chain 7579 chrY 59373566 + 1783967 1784050 L1PA8 5853 - 380 463 173670 83 chain 22648 chrY 59373566 + 1784442 1784784 L1PA8 5853 + 5521 5844 117333 43 1 0 45 2 0 14 1 0 56 1 0 8 2 1 51 14 13 8 1 0 40 11 0 44 chain 36617 chrY 59373566 + 1790577 1791011 L1PA5 6144 - 12 446 74071 434 chain 9449 chrY 59373566 + 1795068 1795191 MER4E 760 - 404 526 163316 76 0 2 8 3 0 36 chain 5857 chrY 59373566 + 1795235 1795349 MLT2B4 540 - 125 211 186621 24 1 0 17 27 1 31 1 0 13 chain 33156 chrY 59373566 + 1795404 1795771 L1PA4 6152 - 458 825 78975 367 chain 39838 chrY 59373566 + 1795772 1796222 L1PA4 6152 + 5691 6140 69561 397 1 0 52 chain 13421 chrY 59373566 + 1796244 1796443 MER4E1 777 - 582 777 146627 6 1 0 31 0 10 67 3 0 22 3 0 34 7 0 25 chain 37798 chrY 59373566 + 1798901 1799328 L1PA7 6471 + 6033 6460 72421 427 chain 6414 chrY 59373566 + 1806655 1806790 MER4D0 881 - 126 273 181921 58 15 15 10 19 31 33 chain 8644 chrY 59373566 + 1811597 1811708 MER41B 635 - 13 124 167517 111 chain 48408 chrY 59373566 + 1816662 1817300 L1PA8 5853 - 0 636 60173 93 1 0 19 8 7 32 10 9 14 1 0 71 2 0 44 1 0 318 0 5 24 chain 4012 chrY 59373566 + 1846852 1846901 L1P5 443 - 155 204 207202 49 chain 50181 chrY 59373566 + 1866299 1866902 L1PA8 5853 - 0 597 58880 93 1 0 19 2 1 52 1 0 9 2 1 70 2 0 46 1 0 246 0 1 59 chain 6272 chrY 59373566 + 1867483 1867550 L1PA8 5853 - 173 240 182991 67 chain 13134 chrY 59373566 + 1884163 1884312 L1PA5 6144 - 12 161 147707 149 chain 47169 chrY 59373566 + 1891498 1892085 L1PA7 6471 + 5883 6469 61073 425 1 2 149 2 0 10 chain 33708 chrY 59373566 + 1905019 1905555 LTR61 567 - 0 567 78085 49 1 0 11 1 0 65 21 77 141 3 4 30 3 0 77 0 1 27 12 0 19 21 15 32 4 0 19 chain 6302 chrY 59373566 + 1906075 1906152 THE1B 368 - 291 368 182779 77 chain 5203 chrY 59373566 + 1906236 1906294 THE1B 368 - 304 362 192995 58 chain 6302 chrY 59373566 + 1906371 1906448 THE1B 368 - 291 368 182778 77 chain 34487 chrY 59373566 + 1908948 1909360 L1PA7 6471 - 1 411 76929 28 1 0 144 2 1 237 chain 21396 chrY 59373566 + 1912948 1913207 AluSc8 310 + 32 290 122524 102 2 1 155 chain 78461 chrY 59373566 + 1915750 1916680 L1PA6 6164 - 2 931 44289 6 4 0 136 1 2 171 0 1 531 0 1 81 chain 23908 chrY 59373566 + 1920124 1920417 AluSc 308 + 10 304 110868 267 0 1 26 chain 35696 chrY 59373566 + 1925405 1925819 L1PA5 6144 - 1 412 75275 6 3 0 405 chain 37620 chrY 59373566 + 1932756 1933254 L1PA8 5853 - 1 492 72661 92 1 0 19 2 1 47 1 0 14 1 0 71 3 1 45 1 0 201 chain 15605 chrY 59373566 + 1947871 1948188 THE1B 368 - 30 353 139566 26 1 2 7 2 0 60 7 15 11 4 8 8 1 0 4 4 0 6 15 14 40 29 30 92 chain 19324 chrY 59373566 + 1948854 1949076 L1PA7 6471 + 6242 6464 129171 222 chain 56875 chrY 59373566 + 1960276 1960943 L1PA6 6164 - 21 686 54615 139 2 0 526 chain 4480 chrY 59373566 + 1961352 1961431 THE1B 368 + 253 327 201018 47 7 1 9 1 2 15 chain 6389 chrY 59373566 + 1967401 1967503 MER66A 478 - 0 104 182108 22 18 20 62 chain 17889 chrY 59373566 + 1975608 1975840 LTR62 707 - 98 330 133137 208 0 1 12 1 0 11 chain 29580 chrY 59373566 + 1976534 1976894 L1PA7 6471 + 6100 6461 86270 184 0 1 12 2 1 135 0 1 27 chain 23295 chrY 59373566 + 1986192 1986476 AluSp 311 + 5 289 114230 284 chain 17402 chrY 59373566 + 1986567 1987489 LTR19C 757 - 166 662 134502 104 63 53 22 8 5 9 0 4 60 1 0 10 7 0 7 5 12 10 12 9 14 525 115 44 9 6 12 chain 17788 chrY 59373566 + 1988261 1988498 AluSz 310 + 3 236 133452 38 1 0 70 2 1 21 2 0 103 chain 17339 chrY 59373566 + 2001749 2001953 AluY 311 + 105 307 134681 17 3 0 4 0 1 180 chain 38918 chrY 59373566 + 2076571 2077010 L1PA7 6471 - 2 441 70842 439 chain 25449 chrY 59373566 + 2083989 2084282 AluYk4 311 - 17 310 102462 293 chain 25424 chrY 59373566 + 2086892 2087334 LTR21B 408 + 0 408 102579 61 8 4 4 1 0 28 1 0 5 5 0 124 41 0 14 1 0 4 13 31 70 5 7 4 1 0 52 chain 7466 chrY 59373566 + 2113659 2114176 MER4A1 472 + 288 472 174367 52 409 74 14 0 2 42 chain 46212 chrY 59373566 + 2119202 2119783 LTR10C 591 + 0 591 61838 14 0 5 372 1 2 117 2 1 26 0 5 49 chain 3234 chrY 59373566 + 2138823 2138863 LTR12 884 + 228 268 220346 40 chain 3678 chrY 59373566 + 2138960 2139011 LTR12 884 + 181 274 212266 27 0 42 24 chain 7685 chrY 59373566 + 2140934 2141031 L1PB3 3668 + 3291 3388 173009 97 chain 3806 chrY 59373566 + 2155509 2155557 MLT1D 503 + 0 50 210289 20 0 2 28 chain 3195 chrY 59373566 + 2155665 2155704 MLT1D 503 + 9 50 221021 11 0 2 28 chain 3064 chrY 59373566 + 2155811 2155850 MLT1D 503 + 9 50 223678 11 0 2 28 chain 54838 chrY 59373566 + 2162973 2163627 L1PA7 6471 + 5817 6468 55809 151 0 1 168 1 0 302 0 1 21 4 0 7 chain 60322 chrY 59373566 + 2173310 2174032 L1PA7 6471 + 5739 6461 52667 722 chain 24969 chrY 59373566 + 2175532 2175837 AluY 311 + 10 303 104961 56 2 0 60 0 1 169 11 0 7 chain 25620 chrY 59373566 + 2180389 2180706 L1PA7 6471 + 6084 6408 101624 280 6 13 31 chain 4717 chrY 59373566 + 2180706 2180765 L1PA7 6471 + 6409 6468 198315 59 chain 4442 chrY 59373566 + 2181348 2181404 LTR39 781 + 505 564 201424 9 0 3 47 chain 58111 chrY 59373566 + 2181719 2182830 MER4E 760 - 0 760 53920 316 12 11 69 1 3 86 0 2 6 350 0 97 5 1 169 chain 9564 chrY 59373566 + 2184735 2184862 MER85 139 + 0 138 162764 42 0 1 46 1 11 38 chain 13704 chrY 59373566 + 2203246 2203477 MER4A1 472 - 45 297 145587 25 5 7 103 37 56 61 chain 8762 chrY 59373566 + 2204906 2205019 L1PA8 5853 - 0 112 166859 93 1 0 19 chain 23905 chrY 59373566 + 2208088 2208390 L1PA7 6471 + 6168 6469 110880 249 10 0 7 0 9 36 chain 2780 chrY 59373566 + 2209627 2209658 MLT1C 463 - 359 390 229008 31 chain 49038 chrY 59373566 + 2212286 2212911 L1PA7 6471 + 5709 6467 59721 84 1 0 139 9 143 24 9 7 30 0 1 320 0 1 9 chain 31331 chrY 59373566 + 2214686 2215066 L1PA7 6471 - 2 375 81928 13 11 0 41 0 4 315 chain 33202 chrY 59373566 + 2218816 2219287 L1PA8 5853 + 5390 5853 78881 71 1 0 103 6 5 39 2 0 74 1 0 6 8 7 45 2 1 16 5 4 92 chain 4207 chrY 59373566 + 2223592 2223639 MADE1 96 + 49 96 204452 47 chain 10215 chrY 59373566 + 2233821 2233956 L1PA8 5853 + 5674 5805 159539 5 1 0 12 1 0 49 2 1 19 1 0 45 chain 2935 chrY 59373566 + 2250491 2250572 HAL1-2a_MD 234 + 57 111 226422 6 3 0 20 28 4 24 chain 18460 chrY 59373566 + 2252742 2252964 L1PA2 6032 + 5808 6032 131613 79 0 2 143 chain 3102 chrY 59373566 + 2264285 2264318 MLT1C 463 - 358 391 222892 33 chain 20982 chrY 59373566 + 2277319 2277597 L1PA7 6471 - 4 280 123982 9 1 0 135 0 1 6 3 1 124 chain 53569 chrY 59373566 + 2287431 2288025 L1PA4 6152 + 5563 6152 56630 583 5 0 6 chain 42320 chrY 59373566 + 2296324 2296819 L1PA7 6471 + 5971 6468 66244 32 0 2 463 chain 24286 chrY 59373566 + 2301450 2301812 L1PA8 5853 - 9 365 108734 84 1 0 19 2 1 40 23 21 69 2 0 45 2 1 48 0 1 27 chain 13814 chrY 59373566 + 2334849 2335123 AluSq2 311 + 25 301 145201 107 86 88 81 chain 37438 chrY 59373566 + 2381035 2381491 PABL_B 668 - 213 668 72908 177 1 0 278 chain 12545 chrY 59373566 + 2383596 2383761 L1PA8 5853 - 0 163 150061 93 1 0 19 3 2 49 chain 3782 chrY 59373566 + 2395966 2396010 THE1B 368 - 1 45 210641 44 chain 57778 chrY 59373566 + 2402547 2403228 L1PA7 6471 + 5786 6468 54096 649 3 4 29 chain 39754 chrY 59373566 + 2417052 2417636 MER41A 554 - 8 553 69681 23 1 0 50 0 5 12 1 0 25 1 2 32 0 1 26 38 0 7 5 6 42 0 1 140 13 4 100 0 1 68 chain 22452 chrY 59373566 + 2421962 2422232 AluSc 308 + 12 283 118234 192 1 2 77 chain 27637 chrY 59373566 + 2422696 2423051 THE1A 353 - 0 353 94242 155 1 0 88 4 2 18 5 6 84 chain 24653 chrY 59373566 + 2430472 2430855 MLT2A1 477 - 92 477 106706 74 0 1 8 4 10 88 0 3 21 0 1 9 50 41 129 chain 3990 chrY 59373566 + 2436552 2436631 MSTB1 431 + 351 431 207531 31 21 22 27 chain 25097 chrY 59373566 + 2463138 2463480 THE1B 368 - 0 368 104310 64 2 0 128 0 1 8 2 0 84 10 39 44 chain 32368 chrY 59373566 + 2467978 2468400 L1PA8 5853 + 5438 5853 80243 124 1 0 46 2 0 74 1 0 5 4 3 50 2 1 19 1 0 93 chain 44716 chrY 59373566 + 2472581 2473111 MER41A 554 + 18 553 63364 390 0 4 18 0 1 122 chain 7876 chrY 59373566 + 2552706 2552830 MER1A 529 - 0 127 171829 58 17 16 32 0 4 17 chain 44678 chrY 59373566 + 2555904 2556422 L1PA7 6471 + 5927 6447 63399 91 0 1 100 0 1 327 chain 4114 chrY 59373566 + 2599930 2599980 MADE1 96 - 1 51 205722 50 chain 4368 chrY 59373566 + 2600090 2600139 MADE1 96 + 45 94 202336 49 chain 29688 chrY 59373566 + 2614472 2614895 MLT2A1 477 - 0 450 85873 51 9 41 186 1 2 28 4 1 38 8 5 98 chain 31407 chrY 59373566 + 2622559 2622996 MLT2A1 477 - 0 477 81800 37 24 56 119 1 10 50 0 1 24 0 1 9 7 4 166 chain 41622 chrY 59373566 + 2644150 2644702 LTR6B 557 - 0 557 67128 22 0 1 6 0 5 22 0 1 5 13 14 82 4 0 44 0 1 304 1 0 22 0 1 27 chain 33347 chrY 59373566 + 2649101 2649520 PABL_A 660 + 0 434 78661 63 0 5 16 0 9 263 0 1 77 chain 170425 chrY 59373566 + 2671231 2673583 L1PA10 4194 - 33 2373 22001 11 1 0 34 3 0 64 0 8 85 10 6 338 0 1 160 0 4 125 6 8 83 0 2 6 0 1 250 4 0 154 21 19 129 29 10 33 0 1 282 3 0 112 5 7 243 8 11 153 chain 496058 chrY 59373566 + 2673610 2679782 L1PA6 6164 - 2 6164 7067 151 0 1 671 0 1 22 1 2 1035 0 3 268 0 3 688 0 1 125 7 2 58 40 0 19 1 5 167 0 1 26 6 10 62 1 0 240 0 3 7 1 4 31 30 0 161 9 0 556 0 15 34 1 2 95 6 5 7 0 1 28 0 1 83 0 2 87 8 6 928 5 0 7 0 7 66 7 6 61 0 1 192 0 1 4 0 29 107 0 1 63 chain 21756 chrY 59373566 + 2693213 2693499 AluSp 311 + 21 309 121184 187 6 7 29 0 1 64 chain 28935 chrY 59373566 + 2718881 2719183 AluYa5 310 - 8 310 89290 302 chain 43445 chrY 59373566 + 2740200 2740712 MER9a1 513 - 0 513 64877 40 1 0 66 0 2 405 chain 76032 chrY 59373566 + 2744516 2745497 LTR13 1007 + 7 1007 45460 61 2 0 313 4 5 64 0 1 238 0 6 41 0 1 78 0 1 80 8 20 59 2 1 31 chain 12680 chrY 59373566 + 2754730 2755222 HERVK3-int 3053 - 2617 3032 149540 31 12 7 16 16 13 72 130 103 45 14 0 13 1 0 5 99 72 38 chain 6238 chrY 59373566 + 2755268 2755349 LTR3 431 - 3 83 183262 44 1 0 36 chain 147783 chrY 59373566 + 2771332 2774214 L1PB1 5432 + 3179 5424 24910 58 1 0 6 0 1 158 2 0 326 5 7 9 0 1 17 11 15 300 316 0 48 5 10 67 0 1 182 0 1 228 7 8 181 0 1 8 11 13 138 6 7 24 24 16 40 19 17 36 359 55 9 2 0 52 1 0 18 1 0 43 1 0 11 8 5 17 38 27 6 2 0 13 0 1 10 1 0 19 5 4 11 1 0 16 1 0 4 chain 148550 chrY 59373566 + 2785853 2787513 L1PA3long 6157 - 15 1665 24811 192 10 1 51 1 0 1406 chain 135069 chrY 59373566 + 2788135 2789823 L1PA7 6471 - 3184 4888 26953 27 0 1 16 4 0 6 10 13 4 0 1 24 0 8 25 0 1 57 0 4 161 0 1 121 0 1 121 1 0 62 0 1 523 2 0 5 0 2 519 chain 238275 chrY 59373566 + 2789823 2793157 L1PA7 6471 + 3422 6469 16863 107 2 1 36 0 3 62 3 4 34 3 0 233 299 0 413 10 11 213 4 5 411 1 0 162 0 1 47 0 1 224 0 2 192 18 0 9 1 21 104 0 1 144 0 1 117 0 1 14 0 1 221 10 11 78 12 12 150 chain 28186 chrY 59373566 + 2843719 2844100 L1PA8 5853 - 0 373 92352 93 1 0 9 1 0 12 1 0 50 13 11 70 4 2 42 1 0 84 chain 127889 chrY 59373566 + 2865433 2866982 LTR12C 1709 - 0 1709 28600 61 0 6 348 14 0 66 0 4 22 0 166 199 1 0 729 8 7 101 chain 13561 chrY 59373566 + 2884323 2884526 L1P3 4156 - 17 206 146126 24 2 1 9 2 0 77 13 2 76 chain 22701 chrY 59373566 + 2884711 2885094 L1P1 4361 - 44 428 117068 12 8 7 71 0 1 13 0 1 43 27 26 114 20 29 52 8 0 15 chain 4766 chrY 59373566 + 2890705 2890764 L1PA13 3608 - 3331 3390 197748 59 chain 494088 chrY 59373566 + 2894906 2901025 L1PA6 6164 - 7 6162 7166 8 0 9 126 10 11 193 10 12 1074 2 1 827 0 1 124 0 1 73 1 0 3 1 0 504 0 1 342 0 2 117 9 14 54 4 0 101 2 0 233 0 1 181 0 1 240 0 1 714 4 13 217 5 30 418 2 1 309 0 1 80 21 7 110 chain 4455 chrY 59373566 + 2909261 2909312 LTR19A 502 + 440 491 201292 51 chain 4732 chrY 59373566 + 2910823 2910959 MER2 342 + 135 274 198134 16 41 42 17 12 14 50 chain 75056 chrY 59373566 + 2916808 2917936 L1PA10 4194 - 33 1180 45990 11 1 0 33 3 0 6 1 0 4 0 1 72 26 0 18 4 42 417 36 35 280 25 32 74 0 1 53 17 21 47 chain 14604 chrY 59373566 + 2938755 2939019 L1PA16 3655 - 206 471 142571 4 0 1 20 4 7 48 0 1 4 22 23 40 17 13 87 1 0 17 chain 8536 chrY 59373566 + 2940892 2941359 LTR12D 1347 + 587 1081 168102 22 2 44 40 61 13 22 244 282 12 4 0 27 3 2 30 chain 13420 chrY 59373566 + 2955013 2955517 L1PREC2 3366 - 330 773 146633 26 177 143 14 14 10 36 70 46 9 2 0 21 24 27 111 chain 37172 chrY 59373566 + 2956127 2956719 MER51C 639 + 0 603 73279 14 0 61 20 61 5 105 5 6 15 0 1 21 4 0 14 0 2 97 0 4 35 5 7 29 0 1 4 1 0 162 chain 6301 chrY 59373566 + 2967930 2968086 L1MA3 4352 - 0 147 182788 13 10 7 4 1 0 15 7 6 19 1 0 5 2 1 24 12 10 43 chain 10075 chrY 59373566 + 2988197 2988500 L1MA3 4352 - 84 357 160196 11 2 0 22 6 2 15 16 20 79 115 87 37 chain 21862 chrY 59373566 + 2990119 2990425 L1PB2 3958 + 3451 3753 120775 88 3 1 77 1 0 59 4 3 74 chain 44461 chrY 59373566 + 3005175 3005757 HERVL-int 5654 + 5003 5608 63625 275 0 3 106 0 11 36 1 5 53 0 5 111 chain 25594 chrY 59373566 + 3030544 3030917 THE1C 375 - 0 375 101757 17 23 22 47 4 6 96 3 4 183 chain 95282 chrY 59373566 + 3042650 3043799 L1PA7 6471 - 10 1155 38009 184 6 0 574 1 0 71 8 11 305 chain 50694 chrY 59373566 + 3057038 3057661 LTR12_ 688 + 0 688 58508 80 0 66 367 1 0 175 chain 25034 chrY 59373566 + 3076416 3076777 THE1D 372 + 0 372 104621 64 1 11 91 18 21 6 1 0 147 1 0 32 chain 12331 chrY 59373566 + 3082449 3082654 L1PA5 6144 + 5920 6095 150888 126 48 18 31 chain 55237 chrY 59373566 + 3089651 3090344 MER4E1 777 - 0 702 55562 226 1 9 255 0 1 211 chain 7094 chrY 59373566 + 3111626 3111758 L1PA15 4387 + 4233 4356 176805 31 9 6 44 3 1 11 7 3 27 chain 107995 chrY 59373566 + 3142447 3143696 L1P2 5180 - 2708 3958 34630 911 0 1 338 chain 137986 chrY 59373566 + 3143696 3145283 L1PA5 6144 + 4557 6144 26483 65 1 0 896 0 1 625 chain 115704 chrY 59373566 + 3150546 3152230 L1PB1 5432 - 9 1694 32556 9 1 0 10 1 0 12 1 0 22 1 0 22 2 0 16 1 0 8 2 0 16 24 13 15 1 0 44 7 6 9 2 1 21 0 2 27 18 12 14 16 14 16 3 0 5 1 6 32 11 12 184 0 27 222 1 0 75 0 1 170 1 0 396 3 0 11 0 1 9 0 1 79 0 1 92 4 5 47 chain 68094 chrY 59373566 + 3166560 3167379 L1PA5 6144 - 9 824 49205 146 11 10 500 0 1 83 3 0 6 1 4 49 9 5 11 chain 51269 chrY 59373566 + 3167379 3167981 L1PA5 6144 + 4710 5309 58059 317 2 1 259 2 0 22 chain 38148 chrY 59373566 + 3170387 3170921 MLT2A2 560 + 0 560 71914 69 2 0 100 3 11 10 9 17 193 14 25 60 5 6 69 chain 21464 chrY 59373566 + 3172166 3172458 L1PA7 6471 + 6168 6461 122276 38 4 5 96 2 0 5 10 12 137 chain 23854 chrY 59373566 + 3186772 3187148 THE1C 375 + 0 375 111163 66 0 32 8 38 8 11 3 0 59 2 3 163 1 0 25 chain 519680 chrY 59373566 + 3203236 3209739 L1PA7 6471 + 0 6466 5189 124 0 1 286 6 7 102 0 1 168 20 21 298 1 0 295 0 1 191 8 11 246 1 2 147 0 1 265 0 1 473 18 1 122 0 4 277 0 1 438 14 13 24 0 1 7 1 0 165 1 0 63 0 1 244 0 3 63 0 1 127 60 0 171 0 2 149 7 6 40 31 28 23 1 2 54 0 4 316 4 5 145 1 2 52 0 4 96 0 2 102 0 1 221 0 10 499 2 1 184 1 2 149 chain 25116 chrY 59373566 + 3243988 3244378 L1PA8 5853 + 5463 5853 104192 94 6 5 47 2 0 66 5 4 9 4 0 9 1 4 38 5 4 17 6 5 15 0 7 66 chain 22307 chrY 59373566 + 3258784 3259057 AluY 311 + 36 304 118884 95 2 0 111 3 0 62 chain 117460 chrY 59373566 + 3263081 3264724 L1PB1 5432 - 28 1689 31975 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 30 12 0 16 1 0 45 1 0 15 2 1 50 19 13 11 5 4 22 1 22 112 0 2 178 1 9 137 2 13 18 17 15 470 0 1 129 0 5 157 16 17 92 chain 6676 chrY 59373566 + 3303852 3303952 L1PA15 4387 - 73 170 179863 41 9 6 50 chain 561057 chrY 59373566 + 3311591 3317606 L1HS 6032 + 1 6032 313 184 0 1 1936 3 0 2112 0 4 430 0 2 39 0 11 575 0 1 736 chain 35114 chrY 59373566 + 3333039 3333450 L1PA7 6471 - 1233 1643 76034 289 1 0 121 chain 5579 chrY 59373566 + 3333450 3333515 L1PA7 6471 + 5237 5302 185973 65 chain 23900 chrY 59373566 + 3333515 3333830 L1PA7 6471 + 5303 5621 110908 229 0 1 4 1 0 6 1 0 49 3 7 22 chain 25644 chrY 59373566 + 3333831 3334185 L1PA7 6471 + 5621 5938 101519 186 42 1 6 0 4 120 chain 43030 chrY 59373566 + 3334185 3334710 L1PA7 6471 + 5939 6461 65383 454 0 2 6 2 0 53 3 0 7 chain 29550 chrY 59373566 + 3394329 3394639 AluYa5 310 - 0 310 86413 310 chain 59161 chrY 59373566 + 3427859 3428652 L1PA13 3608 + 1086 1896 53300 36 0 1 16 0 1 104 7 11 46 6 10 204 5 9 126 0 3 243 chain 20509 chrY 59373566 + 3446323 3446632 AluSc8 310 + 10 309 125604 43 17 11 44 17 21 109 2 0 3 6 0 68 chain 12663 chrY 59373566 + 3451075 3451305 L1PA8 5853 - 16 259 149594 9 0 1 67 1 0 19 2 1 19 27 43 16 8 0 9 0 8 36 2 0 15 chain 107049 chrY 59373566 + 3451374 3452709 LTR12C 1709 - 0 1709 34955 179 1 103 11 4 8 180 0 4 106 8 165 39 0 2 45 0 118 285 7 0 209 6 0 255 chain 476487 chrY 59373566 + 3457108 3463372 L1PA7 6471 - 4 6052 7846 850 0 3 602 3 4 429 1 0 4 0 1 4 1 3 198 0 1 160 1 2 142 331 18 390 11 7 111 5 4 10 1 2 834 10 9 158 0 2 13 5 0 512 6 7 8 0 1 174 0 8 235 0 1 290 0 19 349 4 0 6 3 7 12 1 66 64 21 26 144 3 0 108 1 0 12 0 1 37 chain 10743 chrY 59373566 + 3464478 3464785 MST-int 1221 - 90 397 157233 12 10 8 38 1 2 11 4 5 74 118 119 23 1 0 15 chain 122165 chrY 59373566 + 3490161 3491702 LTR12C 1709 - 0 1709 30327 117 0 8 273 1 0 83 0 4 107 3 1 5 1 0 74 0 200 134 41 0 440 3 4 259 chain 3663 chrY 59373566 + 3490959 3491000 LTR12C 1709 - 687 728 137093 41 chain 97715 chrY 59373566 + 3498595 3499685 L1PA5 6144 + 5044 6138 37361 253 0 4 837 chain 40921 chrY 59373566 + 3500063 3500572 MER9a3 513 - 0 493 68008 48 17 0 30 0 1 176 1 0 147 0 1 90 chain 33338 chrY 59373566 + 3547149 3547577 L1PA8 5853 - 1092 1521 78677 26 0 1 9 1 8 216 8 1 168 chain 84630 chrY 59373566 + 3547577 3548668 L1PA8 5853 + 4763 5853 41671 221 0 4 18 0 3 24 9 1 102 3 5 324 0 4 95 1 0 44 2 0 70 2 1 64 1 0 17 1 0 93 chain 12259 chrY 59373566 + 3567613 3567761 THE1D 372 + 224 372 151163 148 chain 33428 chrY 59373566 + 3571196 3571639 LTR19A 502 - 0 480 78519 70 2 1 131 5 4 59 0 37 91 0 1 81 0 1 4 chain 29328 chrY 59373566 + 3575644 3576017 MER51B 395 + 7 395 87403 221 9 24 143 chain 33195 chrY 59373566 + 3576287 3576746 LTR19A 502 - 0 502 78896 30 0 1 4 12 11 203 0 37 23 0 14 88 1 0 22 11 4 65 chain 37536 chrY 59373566 + 3611747 3612388 L1PB1 5432 + 4719 5284 72769 360 0 4 11 102 33 7 1 0 8 3 2 12 2 0 3 2 0 9 2 0 52 2 1 16 2 0 47 chain 91902 chrY 59373566 + 3612891 3614196 MER57-int 2662 - 1341 2622 38998 212 1 2 9 6 2 65 6 5 32 1 4 177 2 0 291 0 1 210 2 0 98 0 1 43 6 1 60 1 0 11 57 42 15 chain 60434 chrY 59373566 + 3620169 3620948 MER4E 760 + 0 760 52618 16 7 1 53 8 1 99 16 9 190 4 6 71 1 0 314 chain 248211 chrY 59373566 + 3630078 3633082 L1PA7 6471 - 3 3005 16353 853 1 0 227 0 1 438 1 0 608 0 1 7 2 1 322 0 5 5 1 0 115 0 1 4 8 7 268 8 0 31 0 4 73 1 0 31 chain 17923 chrY 59373566 + 3636119 3636339 L1P2 5180 + 2848 3069 133051 166 0 1 54 chain 3239 chrY 59373566 + 3640293 3640332 ERVL-int 1947 - 309 348 220261 39 chain 5110 chrY 59373566 + 3649623 3649683 L1M3 994 + 218 278 193971 60 chain 74229 chrY 59373566 + 3650473 3651427 LTR5_Hs 974 + 0 974 46401 459 1 5 32 2 0 160 0 1 21 1 19 79 7 7 34 2 1 156 chain 28333 chrY 59373566 + 3652767 3653221 LTR46 455 - 0 455 91824 44 21 17 76 10 20 106 22 23 17 10 4 148 chain 25975 chrY 59373566 + 3660406 3660850 LTR46 455 - 0 455 100115 44 15 16 55 17 18 20 5 4 106 19 23 17 12 6 42 6 18 86 chain 11567 chrY 59373566 + 3672189 3672343 LTR19A 502 + 0 153 154040 34 5 4 115 chain 176245 chrY 59373566 + 3730207 3732650 MER4-int 2692 + 36 2519 21334 49 0 1 13 1 0 23 2 0 76 1 0 45 0 1 415 1 0 5 9 10 51 4 2 161 6 7 172 10 13 10 3 0 12 1 0 70 0 1 51 0 1 170 0 16 50 5 7 284 0 1 4 0 1 131 1 0 21 3 4 80 16 14 18 2 5 156 0 2 5 5 14 15 0 3 16 18 21 9 0 1 9 1 4 233 chain 117641 chrY 59373566 + 3786441 3788105 L1PA10 4194 - 44 1706 31912 7 1 0 27 3 0 9 3 4 21 1 0 452 0 4 101 11 26 370 1 0 32 44 35 13 21 21 69 11 0 257 8 9 63 0 1 17 1 2 21 1 2 34 0 1 5 1 0 59 chain 6483 chrY 59373566 + 3809444 3809528 L1PA13 3608 - 388 471 181373 60 1 0 23 chain 63901 chrY 59373566 + 3814873 3815640 LTR17 781 - 0 781 51052 12 0 1 18 0 22 401 0 1 17 10 0 309 chain 4305 chrY 59373566 + 3819966 3820039 MADE1 96 - 1 91 203150 43 12 29 18 chain 37432 chrY 59373566 + 3828737 3829231 LTR12F 595 - 0 595 72920 271 1 0 40 0 2 43 5 93 34 1 13 99 chain 45058 chrY 59373566 + 3834332 3834967 LTR12F 595 - 0 595 62980 380 14 5 25 0 8 25 0 15 16 25 0 17 6 1 21 24 0 82 chain 510801 chrY 59373566 + 3867130 3873886 L1PA7 6471 + 0 6459 6083 282 1 0 130 35 33 824 27 28 56 5 3 17 2 0 5 0 3 19 3 0 157 1 0 74 0 1 43 0 1 72 5 6 79 0 2 199 0 1 19 17 20 4 1 0 66 2 0 93 0 1 113 1 3 242 0 1 973 2 0 182 0 4 71 28 26 213 0 2 142 0 2 456 0 4 248 0 1 424 0 8 76 0 1 191 1 0 158 325 0 460 7 15 205 chain 18696 chrY 59373566 + 3879778 3880015 THE1A-int 1579 + 205 442 130960 237 chain 2774 chrY 59373566 + 3881884 3881913 MER50-int 1626 - 81 110 229131 29 chain 9815 chrY 59373566 + 3891000 3891147 MER99 766 - 376 546 161520 18 11 21 62 0 13 56 chain 7841 chrY 59373566 + 3901199 3901292 LTR35A 463 - 0 93 172070 93 chain 20234 chrY 59373566 + 3914022 3914351 THE1D 372 + 47 372 126431 27 16 17 59 5 0 34 27 29 11 1 0 32 1 0 116 chain 126614 chrY 59373566 + 3942651 3944306 L1PA8 5853 - 0 1643 28915 93 1 0 17 1 0 55 13 11 69 2 0 46 1 0 156 3 1 143 5 6 114 1 0 55 3 0 78 3 1 116 0 1 486 1 2 193 chain 113849 chrY 59373566 + 3966975 3968339 LTR12C 1709 + 0 1709 33135 104 0 1 693 3 319 107 0 4 71 8 32 378 chain 180397 chrY 59373566 + 3972887 3975693 MER4-int 2692 + 1 2692 20952 10 1 0 25 2 0 21 1 0 4 0 1 37 4 1 18 1 0 11 9 4 355 0 1 43 7 16 65 0 5 41 1 0 51 0 1 13 10 11 11 32 47 47 0 1 4 1 0 14 0 1 59 2 1 147 5 57 194 221 27 108 1 0 14 4 3 171 1 0 4 0 1 107 0 1 24 1 0 188 1 2 36 0 1 13 0 1 31 0 4 212 15 16 319 11 12 33 0 1 45 chain 2932 chrY 59373566 + 3994865 3994902 MADE1 96 - 57 94 226485 37 chain 120771 chrY 59373566 + 4017376 4018987 L1PA10 4194 + 2526 4146 30770 80 16 6 8 0 13 43 4 8 13 0 1 141 0 4 890 0 2 92 2 1 254 8 7 15 24 21 21 chain 18395 chrY 59373566 + 4055123 4055331 L1PA4 6152 - 6 214 131806 208 chain 428344 chrY 59373566 + 4076798 4082342 HERVL-int 5654 + 0 5578 9346 69 0 1 4 1 0 624 46 41 465 3 0 60 0 5 100 23 24 327 0 3 1139 0 16 78 10 12 538 0 4 456 0 2 15 0 1 112 0 1 109 0 6 342 5 7 131 34 34 689 6 5 158 chain 169584 chrY 59373566 + 4089317 4091200 L1PA3long 6157 - 0 1882 22107 333 0 1 654 1 2 148 4 1 743 chain 8078 chrY 59373566 + 4097397 4097555 LOR1-int 1871 + 103 251 170602 61 1 0 8 1 0 16 33 25 38 chain 30069 chrY 59373566 + 4097733 4098098 L1PA7 6471 - 5 370 84608 144 2 0 5 7 9 207 chain 149422 chrY 59373566 + 4098113 4099952 L1P2 5180 + 1783 3620 24700 256 1 2 56 0 10 175 1 0 37 12 0 1301 chain 29103 chrY 59373566 + 4140906 4141335 LTR7B 505 + 0 503 88536 105 0 10 60 0 38 12 0 25 5 1 0 23 0 2 41 30 31 10 1 0 26 0 1 52 15 14 48 chain 33408 chrY 59373566 + 4142197 4142698 LTR21A 479 + 0 479 78551 22 1 0 35 3 0 7 1 0 54 2 11 56 0 1 62 0 1 4 1 0 4 25 0 127 7 5 10 7 6 17 0 1 56 chain 391398 chrY 59373566 + 4144339 4149470 HERVL-int 5654 - 529 5654 10414 787 2 0 110 0 1 11 1 9 94 18 12 79 0 1 51 9 7 247 0 1 75 14 10 5 0 2 76 5 9 181 8 11 268 1 0 60 2 0 851 1 0 255 17 14 76 14 11 56 5 7 364 3 0 180 3 0 298 1 2 254 0 1 85 0 1 6 1 0 557 chain 30838 chrY 59373566 + 4156224 4156677 LTR7B 505 + 0 494 82790 108 0 10 57 0 38 12 34 27 26 0 2 85 1 0 76 14 13 40 chain 109659 chrY 59373566 + 4163059 4164343 SVA_C 1631 + 54 1630 34287 709 0 296 555 4 0 16 chain 22395 chrY 59373566 + 4167386 4167681 AluSg 306 + 16 305 118509 189 13 7 93 chain 37582 chrY 59373566 + 4168449 4170064 L1PB2 3958 + 32 3836 72709 20 43 26 6 0 7 13 12 7 27 2 0 35 3 0 8 1 0 46 1 0 3 2 0 58 3 6 39 10 11 25 0 2 6 3 0 51 1 0 34 5 0 32 844 3065 58 1 0 64 6 5 67 2 0 19 10 9 55 chain 82393 chrY 59373566 + 4180932 4181906 L1PA6 6164 + 5170 6158 42589 145 1 0 114 0 1 259 0 3 176 0 2 78 0 9 201 chain 43852 chrY 59373566 + 4198435 4199054 L1PBa 3878 - 2257 2881 64384 163 0 1 4 1 0 28 0 1 155 6 7 45 36 39 181 chain 17668 chrY 59373566 + 4216030 4216615 LTR12D 1347 + 478 1335 133778 16 2 74 125 73 13 46 180 303 27 69 206 47 chain 24602 chrY 59373566 + 4217076 4217404 THE1C 375 - 12 357 106987 169 0 14 50 0 3 57 8 9 4 1 0 39 chain 266332 chrY 59373566 + 4218121 4221245 L1PA5 6144 + 2945 6144 15375 212 1 2 16 0 1 78 1 0 268 8 77 46 4 0 1299 0 1 77 0 1 39 6 0 7 0 6 288 9 7 228 0 1 206 1 0 45 0 9 285 chain 38352 chrY 59373566 + 4223433 4223884 LTR7 482 - 0 482 71642 187 0 31 36 1 0 21 0 1 206 chain 289025 chrY 59373566 + 4225143 4228821 HERVH-int 3825 - 0 3825 14083 225 3 8 254 8 218 29 19 21 814 0 1 230 0 10 299 8 35 239 0 1 660 0 3 9 9 13 30 1 0 6 6 7 13 3 2 42 0 37 15 29 0 24 2 1 9 1 0 38 5 0 17 116 0 515 chain 38761 chrY 59373566 + 4228823 4229271 LTR7 482 - 0 480 71064 187 0 31 149 1 2 111 chain 34892 chrY 59373566 + 4229975 4230418 LTR2 463 + 0 463 76353 161 8 28 274 chain 28697 chrY 59373566 + 4246881 4247319 MER57-int 2662 + 40 458 90340 30 61 42 156 0 1 46 2 0 59 0 1 38 1 0 45 chain 44807 chrY 59373566 + 4270183 4270739 HERVL-int 5654 + 2400 2955 63283 381 0 1 21 1 0 39 1 0 113 chain 29404 chrY 59373566 + 4277201 4277509 AluYb9 318 - 10 318 87048 308 chain 71628 chrY 59373566 + 4284344 4285304 L1PA8 5853 - 0 958 47640 56 1 0 37 1 0 16 6 5 46 1 0 11 1 0 14 0 1 59 5 3 43 1 0 340 0 1 43 1 2 97 0 1 66 1 3 114 chain 94217 chrY 59373566 + 4285304 4286517 L1PA8 5853 + 3684 4904 38293 186 0 2 232 0 1 263 6 9 113 0 1 413 chain 532213 chrY 59373566 + 4286688 4292814 L1PA4 6152 + 0 6139 3937 730 0 1 244 0 1 268 1 0 68 1 9 680 5 13 1670 4 0 2455 chain 76716 chrY 59373566 + 4304972 4305845 MER11D 897 + 0 897 45113 559 0 1 14 0 23 300 chain 84679 chrY 59373566 + 4319732 4323130 L1PA10 4194 + 3019 4136 41647 149 2286 7 336 1 0 570 0 1 9 1 2 11 15 12 20 chain 79098 chrY 59373566 + 4331361 4332381 MER11C 1089 + 0 1027 44003 250 3 4 59 0 4 215 33 35 24 6 4 95 0 4 5 1 0 18 1 0 20 0 1 182 1 0 107 chain 35830 chrY 59373566 + 4347903 4348337 L1PA7 6471 + 6034 6469 75093 61 0 1 171 0 2 182 0 1 7 3 0 10 chain 31571 chrY 59373566 + 4349410 4349878 MER4A1 472 - 0 472 81527 64 15 17 193 13 14 14 8 7 146 0 2 15 chain 38281 chrY 59373566 + 4354195 4354710 MLT2A2 560 + 0 560 71739 302 1 3 25 0 24 48 0 11 29 15 19 89 0 4 6 chain 46146 chrY 59373566 + 4357750 4358314 LTR10C 591 - 28 591 61898 33 14 15 4 0 1 63 3 0 447 chain 62168 chrY 59373566 + 4365979 4366832 LTR12D 1347 + 409 1347 51822 127 0 31 13 39 0 114 0 17 309 9 83 28 0 1 134 0 2 16 1 0 63 chain 2857 chrY 59373566 + 4373321 4373355 MER21C 908 + 345 379 227714 34 chain 34307 chrY 59373566 + 4378604 4379049 LTR7 482 - 12 482 77197 192 2 32 21 0 1 109 20 14 101 chain 63542 chrY 59373566 + 4384834 4385674 L1PA11 4918 + 2869 3711 51225 17 1 0 187 6 7 260 0 2 192 1 0 18 0 1 105 3 0 5 1 4 44 chain 8941 chrY 59373566 + 4393300 4393451 MSTA 426 + 264 424 165916 24 31 40 96 chain 52844 chrY 59373566 + 4395041 4395697 LTR17 781 - 0 649 57108 454 0 1 28 12 4 162 chain 4458 chrY 59373566 + 4395697 4395909 MSTA-int 1630 + 1294 1508 140466 46 82 84 84 chain 24527 chrY 59373566 + 4395918 4396312 LTR7 482 - 5 482 107391 172 0 1 7 41 73 45 1 52 12 15 14 101 chain 2103 chrY 59373566 + 4396325 4396425 MSTA-int 1630 + 1517 1616 140466 95 1 0 4 chain 7378 chrY 59373566 + 4419500 4419589 L1PBa 3878 - 2776 2865 174911 89 chain 4621 chrY 59373566 + 4439554 4439655 LTR12C 1709 + 654 716 199398 29 39 0 33 chain 53648 chrY 59373566 + 4453263 4454004 MER4E 760 + 0 753 56587 17 0 1 133 16 20 25 0 3 31 0 3 45 18 19 74 4 0 220 14 18 144 chain 26328 chrY 59373566 + 4459512 4459877 MLT2A1 477 + 0 371 98710 142 0 1 25 5 9 18 21 22 154 chain 3312 chrY 59373566 + 4460010 4460051 MLT2A2 560 + 520 560 218747 20 1 0 20 chain 47533 chrY 59373566 + 4470966 4471923 LTR9B 643 - 0 643 60819 37 333 12 108 0 2 12 3 4 201 0 2 57 6 8 200 chain 42915 chrY 59373566 + 4497223 4497810 LTR22 571 - 8 571 65520 310 5 4 165 25 1 21 3 4 58 chain 88235 chrY 59373566 + 4502063 4503094 LTR5A 1029 + 0 1029 40286 147 1 0 815 1 0 67 chain 147881 chrY 59373566 + 4523448 4525850 L1PA11 4918 + 2441 4502 24892 458 0 2 47 0 1 75 1 0 245 346 12 51 1 0 18 1 0 185 0 1 4 1 0 56 1 0 29 13 14 27 3 0 29 0 1 123 3 1 232 7 16 219 52 40 6 0 4 56 3 2 79 2 0 14 1 0 14 chain 4758 chrY 59373566 + 4531348 4531435 MLT1B 390 - 63 142 197827 53 21 13 13 chain 4959 chrY 59373566 + 4535375 4535435 L1PREC2 3366 + 1980 2040 195592 60 chain 60862 chrY 59373566 + 4547868 4548621 L1PA7 6471 - 2 749 52401 11 2 0 144 1 2 145 14 13 152 4 0 280 chain 56701 chrY 59373566 + 4550452 4551163 L1PA7 6471 - 3 715 54719 47 2 1 153 1 3 508 chain 41903 chrY 59373566 + 4586547 4587286 L1PB1 5432 - 108 832 66754 11 9 0 7 8 6 4 1 0 15 1 0 36 9 8 16 2 1 52 2 0 9 18 13 13 2 0 19 1 0 8 6 3 102 1 0 4 1 2 101 10 9 57 0 3 6 7 12 41 6 4 105 0 11 25 3 0 21 chain 34556 chrY 59373566 + 4587293 4587695 L1PA7 6471 - 2 401 76821 10 2 0 150 1 0 239 chain 106360 chrY 59373566 + 4619501 4620716 L1PA4 6152 - 0 1218 35086 113 0 1 50 7 8 167 0 1 878 chain 308476 chrY 59373566 + 4620716 4624253 L1P1 4361 + 799 4341 13069 56 1 2 177 1 0 186 5 6 1269 0 4 704 1 0 90 0 1 215 0 1 172 0 1 66 2 1 401 1 0 129 5 7 18 1 0 23 2 1 12 chain 7577 chrY 59373566 + 4643340 4643430 L1M1 2793 - 1128 1218 173683 90 chain 12947 chrY 59373566 + 4661540 4661695 L1PA4 6152 + 5995 6152 148441 149 0 2 6 chain 6801 chrY 59373566 + 4671513 4671631 L1MDb 1215 - 351 459 178945 41 9 0 40 6 5 22 chain 35067 chrY 59373566 + 4673254 4673725 LTR12 884 + 0 624 76096 24 1 0 50 1 0 134 4 46 10 0 113 247 chain 216783 chrY 59373566 + 4681341 4683796 L1PA4 6152 + 3692 6152 18069 939 1 0 34 1 0 113 2 0 526 0 4 833 0 5 6 chain 21504 chrY 59373566 + 4684350 4684622 L1PA7 6471 - 7 281 122129 14 0 1 128 13 14 117 chain 5975 chrY 59373566 + 4691631 4691802 L1MA4A 3247 - 75 241 185473 19 29 23 23 1 0 18 35 37 46 chain 186359 chrY 59373566 + 4697209 4699840 L1PA10 4194 + 407 4161 20388 54 0 20 9 4 1139 128 4 2 6 0 4 44 0 4 8 36 21 764 1 15 7 1 0 16 13 9 46 0 1 19 2 1 227 0 5 7 28 3 162 20 9 14 2 0 702 0 5 248 20 17 27 1 0 11 chain 26722 chrY 59373566 + 4715932 4716405 L1PB2 3958 + 3361 3814 97249 16 3 0 62 2 0 13 20 16 52 49 48 49 1 0 62 4 3 53 6 1 18 2 0 21 1 0 39 chain 332909 chrY 59373566 + 4725525 4729586 L1PA4 6152 - 10 4068 12093 463 0 1 493 9 15 541 1 0 408 0 1 33 0 3 892 0 1 28 0 1 345 3 4 350 14 1 235 5 6 8 6 0 110 0 2 117 chain 545506 chrY 59373566 + 4734400 4740558 L1PA3long 6157 + 0 6153 2010 742 1 0 1125 0 1 1008 0 1 231 2 1 68 1 2 1178 0 4 104 11 0 1432 0 1 255 chain 15211 chrY 59373566 + 4742338 4742511 L1PA5 6144 + 5956 6129 140742 173 chain 28183 chrY 59373566 + 4763185 4763493 AluYa5 310 + 0 306 92370 97 3 0 34 0 1 174 chain 28582 chrY 59373566 + 4763687 4763995 AluYa5 310 - 3 310 90815 189 1 0 118 chain 24266 chrY 59373566 + 4777888 4778207 AluSp 311 + 10 311 108865 110 5 0 8 13 0 183 chain 46080 chrY 59373566 + 4779596 4780169 L1PA5 6144 + 5593 6144 61965 297 1 2 121 0 1 65 25 1 64 chain 247056 chrY 59373566 + 4781199 4783986 L1PA4 6152 - 9 2904 16394 659 5 17 144 2 90 882 1 9 1094 chain 6426 chrY 59373566 + 4784682 4784767 THE1C-int 1605 - 404 508 181823 74 0 19 11 chain 14526 chrY 59373566 + 4786049 4786208 L1PA3long 6157 + 5989 6149 142804 18 0 1 141 chain 6728 chrY 59373566 + 4794715 4794789 L1PA5 6144 + 6067 6141 179488 74 chain 21093 chrY 59373566 + 4809599 4809873 L1P3 4156 + 0 273 123571 251 2 1 21 chain 55111 chrY 59373566 + 4809873 4810595 L1PA8 5853 + 5135 5849 55635 379 1 0 50 1 0 35 11 9 70 2 1 9 1 0 52 2 1 19 2 1 88 chain 563499 chrY 59373566 + 4816954 4822979 L1HS 6032 - 0 6029 253 2215 0 1 430 0 1 1253 0 2 2127 chain 13296 chrY 59373566 + 4830706 4831190 L1M1 2793 - 1676 2132 147094 114 114 110 31 39 36 17 13 14 17 105 83 34 chain 14229 chrY 59373566 + 4837401 4837557 L1PA4 6152 - 6 162 143795 156 chain 548951 chrY 59373566 + 4841280 4847435 L1PA3long 6157 + 0 6157 1584 152 0 1 102 0 1 85 19 14 387 1 0 277 0 4 710 1 2 3222 0 1 1199 chain 5179 chrY 59373566 + 4878897 4879008 MER5A1 166 - 2 117 193243 24 17 20 28 13 14 29 chain 12731 chrY 59373566 + 4887120 4887290 U2 167 + 0 164 149326 130 2 0 11 5 1 22 chain 543402 chrY 59373566 + 4909152 4915178 L1PA3long 6157 - 0 6157 2279 4 0 1 2710 0 1 2532 0 128 628 0 1 152 chain 50256 chrY 59373566 + 4921528 4922114 L1PA5 6144 + 5556 6141 58823 425 1 6 6 5 0 39 1 0 109 chain 107151 chrY 59373566 + 4949344 4950796 L1PA10 4194 - 33 1470 34932 11 1 0 27 5 3 5 1 0 39 2 0 43 0 5 67 9 4 305 0 4 261 0 3 5 3 0 241 16 2 176 1 0 4 1 2 190 3 4 36 chain 10289 chrY 59373566 + 4965591 4965832 L1PB1 5432 + 5207 5424 159183 13 2 1 16 2 1 42 1 0 16 2 0 6 16 6 19 25 20 23 1 0 21 1 0 13 1 0 16 1 0 4 chain 77104 chrY 59373566 + 4989676 4990728 HERVL-int 5654 - 0 1099 44917 41 12 4 6 4 0 13 5 25 132 4 0 213 1 2 409 16 17 69 8 7 67 1 42 10 0 1 41 chain 63779 chrY 59373566 + 5008886 5009569 L1HS 6032 - 0 684 51109 241 0 1 442 chain 67128 chrY 59373566 + 5009576 5010299 L1HS 6032 + 4639 5366 49600 543 0 4 180 chain 9129 chrY 59373566 + 5014643 5014755 HERVL-int 5654 + 5538 5653 164917 15 0 3 97 chain 41349 chrY 59373566 + 5014756 5015299 MLT2A2 560 + 0 560 67473 28 0 5 258 0 1 4 1 0 106 0 11 65 11 12 70 chain 10768 chrY 59373566 + 5015304 5015475 L1PA16 3655 + 3460 3619 157118 117 3 0 11 2 0 7 16 9 15 chain 5984 chrY 59373566 + 5042230 5042301 L1PB3 3668 - 190 261 185393 71 chain 101369 chrY 59373566 + 5043414 5044498 L1HS 6032 - 0 1084 36428 1084 chain 153146 chrY 59373566 + 5048102 5050145 L1PA11 4918 - 2850 4909 24209 42 9 21 177 10 16 19 0 1 179 0 3 22 3 4 120 1 7 48 9 8 93 0 1 62 0 1 490 2 0 241 0 1 292 10 7 11 0 1 12 9 8 53 2 0 13 1 0 36 4 1 36 2 0 26 2 0 7 chain 25745 chrY 59373566 + 5054432 5054772 THE1C 375 - 29 375 101105 35 0 1 28 7 11 95 0 1 175 chain 18620 chrY 59373566 + 5059117 5059353 L1PA6 6164 + 5924 6160 131161 84 1 3 142 2 0 7 chain 17975 chrY 59373566 + 5059516 5059834 L1PA8 5853 - 0 304 132926 89 5 4 19 13 12 20 16 9 12 13 11 68 2 0 45 1 0 15 chain 36807 chrY 59373566 + 5062658 5063181 LTR12D 1347 - 3 942 73792 11 10 0 27 0 337 258 1 59 62 1 0 22 2 33 116 1 2 12 chain 76506 chrY 59373566 + 5064611 5065432 L1PA2 6032 - 594 1415 45210 821 chain 55716 chrY 59373566 + 5065432 5066030 L1PA2 6032 + 5431 6029 55292 598 chain 15612 chrY 59373566 + 5074186 5074380 THE1B 368 - 0 194 139543 194 chain 190418 chrY 59373566 + 5105494 5107626 L1PA4 6152 + 4020 6152 20004 1281 1 0 689 0 1 161 chain 28315 chrY 59373566 + 5129260 5129624 THE1B-int 1605 + 0 368 91886 74 0 4 290 chain 62643 chrY 59373566 + 5129650 5130604 L1PA8 5853 - 0 940 51611 88 6 5 18 1 0 40 0 7 7 19 10 70 2 0 36 10 9 168 0 1 44 12 25 108 9 11 119 4 2 78 7 0 8 30 16 70 chain 54045 chrY 59373566 + 5141353 5142100 MER4E 760 - 30 760 56331 286 1 0 73 0 2 170 0 1 22 31 25 33 28 17 84 2 0 17 chain 68636 chrY 59373566 + 5155147 5155964 L1PA7 6471 + 5646 6470 48965 440 0 4 208 1 2 156 0 2 12 chain 54412 chrY 59373566 + 5184044 5184805 MER4E 760 - 8 760 56087 308 6 5 68 0 2 26 13 5 111 10 7 54 7 0 8 7 17 56 0 1 19 6 2 44 3 4 15 chain 9308 chrY 59373566 + 5190346 5190529 MER2 342 - 23 206 164026 11 13 15 41 33 31 85 chain 38174 chrY 59373566 + 5192827 5193276 LTR7 482 - 0 482 71877 176 0 1 10 0 31 38 0 1 225 chain 277526 chrY 59373566 + 5194525 5198016 HERVH-int 3825 - 0 3825 14774 225 6 8 143 23 23 96 0 210 39 9 11 813 2 1 145 0 2 84 0 10 299 8 35 277 0 4 39 0 1 541 0 6 32 0 3 13 7 4 6 0 6 20 5 25 16 21 0 32 12 11 14 3 0 9 6 18 24 1 0 10 1 0 30 0 56 403 0 4 77 chain 39740 chrY 59373566 + 5198018 5198468 LTR7 482 - 0 482 69701 191 0 31 37 5 6 217 chain 19685 chrY 59373566 + 5200223 5200451 MER4E 760 + 525 753 128144 228 chain 13823 chrY 59373566 + 5201466 5201661 LTR8 732 - 0 183 145167 150 17 5 28 chain 33223 chrY 59373566 + 5202946 5203436 PRIMA4_LTR 623 - 22 623 78843 49 1 3 90 0 70 11 7 16 36 1 6 52 6 9 47 6 5 6 0 23 178 chain 23464 chrY 59373566 + 5223018 5223318 AluSp 311 + 2 298 113296 28 3 0 120 15 14 134 chain 46403 chrY 59373566 + 5224074 5224633 PABL_A 660 - 0 594 61686 86 0 1 288 0 25 36 0 9 149 chain 48014 chrY 59373566 + 5226401 5227027 MER4A1_ 611 - 0 611 60475 98 0 1 382 0 1 7 18 1 121 chain 29515 chrY 59373566 + 5235406 5235726 AluYb8 318 - 0 318 86586 192 2 0 126 chain 79093 chrY 59373566 + 5236220 5237240 THE1A-int 1579 + 568 1574 44005 103 30 16 192 4 1 520 0 4 65 1 0 105 chain 25960 chrY 59373566 + 5237245 5237575 THE1A 353 + 0 329 100172 110 1 0 219 chain 41219 chrY 59373566 + 5253305 5253993 L1PB1 5432 - 100 898 67623 5 2 0 30 17 5 10 8 7 38 1 0 16 2 1 53 2 0 8 2 0 3 2 0 10 1 0 8 1 0 24 3 0 7 1 4 103 0 134 122 3 4 110 21 21 75 chain 25215 chrY 59373566 + 5260143 5260430 AluY 311 + 14 302 103657 112 0 1 175 chain 37468 chrY 59373566 + 5268003 5268481 MER9a3 513 - 0 513 72863 78 0 1 22 0 16 85 0 16 31 9 8 145 0 1 95 0 2 13 chain 19478 chrY 59373566 + 5269486 5269766 L1PA8 5853 - 0 275 128718 92 8 7 66 1 0 9 1 0 71 2 0 30 chain 47462 chrY 59373566 + 5281044 5281704 PABL_A 660 - 0 660 60859 72 0 1 77 6 8 219 4 5 10 1 0 155 38 26 6 0 7 5 0 2 67 chain 24443 chrY 59373566 + 5355228 5355537 AluSg7 307 - 13 307 107842 9 16 0 158 0 1 126 chain 82431 chrY 59373566 + 5364689 5365663 L1PA7 6471 - 1 977 42571 20 0 1 749 0 2 77 1 0 127 chain 31525 chrY 59373566 + 5392606 5393063 L1PA8 5853 - 0 449 81604 88 6 5 16 1 0 38 15 13 14 2 1 70 2 0 22 0 6 18 1 0 22 5 0 25 1 0 111 chain 70778 chrY 59373566 + 5404266 5405227 L1PB1 5432 - 625 1579 48022 100 0 2 81 28 15 545 0 5 74 25 23 31 4 5 73 chain 8670 chrY 59373566 + 5415887 5416007 THE1B 368 - 0 119 167362 56 1 2 10 2 0 51 chain 29952 chrY 59373566 + 5430520 5430837 AluYb8 318 + 0 317 84962 317 chain 25891 chrY 59373566 + 5457528 5458030 L1M1 2793 - 1612 2064 100478 133 1 0 45 1 0 95 18 15 34 40 37 20 1 0 24 67 28 10 2 0 11 chain 5629 chrY 59373566 + 5458995 5459059 L1PA13 3608 - 1540 1604 188777 64 chain 13984 chrY 59373566 + 5465665 5465980 L1PB1 5432 + 5114 5399 144634 20 1 0 8 3 2 12 8 4 8 2 0 34 20 19 16 1 0 44 1 0 15 1 0 4 2 0 13 9 0 13 14 11 9 2 0 24 1 0 22 1 0 7 chain 566410 chrY 59373566 + 5474209 5480240 L1HS 6032 - 0 6032 123 5506 0 1 525 chain 184574 chrY 59373566 + 5487824 5490456 L1PA11 4918 + 1902 4517 20537 291 17 15 256 0 2 70 17 14 167 1 0 186 0 8 214 1 3 333 9 0 6 0 9 183 3 1 140 0 6 210 0 5 83 28 30 46 0 5 21 31 4 47 14 15 38 0 4 17 27 20 44 1 0 12 2 0 66 2 0 15 1 0 20 4 0 9 chain 20963 chrY 59373566 + 5501665 5501943 AluSx 319 + 10 287 124056 123 11 10 144 chain 109111 chrY 59373566 + 5520959 5522201 L1P2 5180 + 798 2041 34417 648 1 0 284 0 1 119 0 1 190 chain 18536 chrY 59373566 + 5565259 5565475 L1PA7 6471 + 6248 6464 131400 216 chain 9746 chrY 59373566 + 5570505 5570618 THE1B-int 1605 + 1486 1600 161865 108 0 1 5 chain 62664 chrY 59373566 + 5638285 5639076 L1PA8 5853 - 0 786 51602 93 1 0 19 3 2 49 1 0 10 1 0 72 2 0 44 1 0 469 9 11 17 chain 20424 chrY 59373566 + 5639076 5639325 L1PA8 5853 + 4782 5028 125074 130 1 0 97 2 0 19 chain 10485 chrY 59373566 + 5683924 5684073 LTR12C 1709 - 832 1058 158314 40 1 0 42 5 83 61 chain 470155 chrY 59373566 + 5700677 5706388 L1PA6 6164 + 356 6158 8028 55 5 6 22 23 0 21 7 6 14 7 45 258 4 21 193 7 1 537 0 1 289 6 5 499 27 0 21 0 2 329 0 1 88 0 1 141 0 70 241 0 1 390 0 1 88 2 0 201 0 2 276 0 4 622 0 2 502 0 4 307 0 1 523 0 5 6 chain 431997 chrY 59373566 + 5712531 5718140 HERVL-int 5654 + 1 5654 9269 41 0 1 52 1 0 113 1 0 36 0 2 37 1 2 22 14 16 339 6 1 37 4 1 100 0 1 79 5 4 7 0 1 552 0 11 477 9 12 42 0 1 345 0 1 374 0 7 75 0 1 172 0 11 1214 0 1 82 9 10 139 0 1 15 5 6 407 21 22 347 2 0 6 0 2 173 0 1 93 0 2 101 0 1 18 0 3 36 chain 3553 chrY 59373566 + 5738804 5738843 L1P4a 3072 - 1931 1970 214488 39 chain 40654 chrY 59373566 + 5809151 5809601 LTR7 482 + 0 482 68364 264 0 31 10 0 1 176 chain 256732 chrY 59373566 + 5809603 5812768 HERVH-int 3825 + 0 3120 15896 488 2 0 44 69 0 38 24 22 12 29 0 14 1 0 13 7 45 23 1 0 57 0 1 6 0 2 13 0 3 442 15 0 458 8 35 1286 0 1 67 9 11 39 chain 39835 chrY 59373566 + 5813627 5814077 LTR7 482 + 0 482 69567 155 0 1 109 0 31 186 chain 23931 chrY 59373566 + 5815320 5815616 AluYf4 310 + 11 302 110747 121 1 0 72 4 3 42 3 0 53 chain 55321 chrY 59373566 + 5815792 5816543 MER4E1 777 + 0 767 55509 48 7 8 83 1 3 132 15 16 213 0 1 38 3 10 200 0 4 11 chain 30427 chrY 59373566 + 5828435 5828753 AluYb8 318 + 0 318 83584 318 chain 65618 chrY 59373566 + 5836312 5837366 L1PB1 5432 - 19 1046 50288 12 1 0 10 1 0 21 1 0 9 39 34 16 9 0 14 21 18 42 2 1 15 2 1 50 3 1 10 17 12 9 1 0 24 1 0 5 7 6 106 3 6 67 0 1 51 0 1 219 0 4 22 3 0 5 5 4 131 1 0 4 0 1 95 chain 43137 chrY 59373566 + 5844984 5845517 L1PA7 6471 + 5935 6469 65247 219 5 6 309 chain 10319 chrY 59373566 + 5858660 5859024 MLT2B1 522 + 55 437 159042 92 21 22 11 127 91 27 57 110 29 chain 38938 chrY 59373566 + 5859681 5860205 MER9a3 513 - 0 513 70818 18 21 6 53 2 3 138 3 2 66 0 1 46 0 1 68 0 1 87 0 1 22 chain 4055 chrY 59373566 + 5870333 5870380 MADE1 96 + 48 95 206551 47 chain 44377 chrY 59373566 + 5882867 5883425 L1P3 4156 + 3551 4108 63719 135 1 0 422 chain 97744 chrY 59373566 + 5884933 5886175 L1P3 4156 - 426 1637 37351 88 0 1 102 10 13 32 1 0 19 2 0 276 0 3 561 35 0 116 chain 11665 chrY 59373566 + 5899311 5899456 L1P3 4156 + 3961 4107 153621 52 0 1 93 chain 2102 chrY 59373566 + 5899458 5899488 L1P3 4156 + 4107 4136 237614 9 1 0 20 chain 94996 chrY 59373566 + 5902919 5904002 L1PA5 6144 + 5063 6144 38099 170 0 1 171 1 0 727 3 1 11 chain 4457 chrY 59373566 + 5905318 5905365 L1PA5 6144 - 251 298 201267 47 chain 17169 chrY 59373566 + 5921869 5922133 THE1D 372 - 10 275 135111 138 1 0 24 35 37 66 chain 11791 chrY 59373566 + 5942817 5942970 MER30 238 - 0 191 153087 107 3 41 43 chain 28161 chrY 59373566 + 5943995 5944288 AluYb8 318 + 0 293 92426 293 chain 23181 chrY 59373566 + 5949099 5949398 AluY 311 + 14 308 114762 39 14 8 71 0 1 175 chain 157802 chrY 59373566 + 5962190 5964114 L1PA7 6471 + 4521 6459 23622 25 6 19 260 1 0 774 0 4 18 2 0 838 chain 56675 chrY 59373566 + 5973748 5974529 LTR12 884 - 0 884 54738 61 4 13 223 10 0 211 2 0 199 5 112 40 1 0 25 chain 3937 chrY 59373566 + 5982593 5982639 MADE1 96 - 50 96 208305 46 chain 35869 chrY 59373566 + 5992458 5992904 LTR2 463 - 16 463 75042 71 7 8 368 chain 2800 chrY 59373566 + 6007353 6007474 LTR7 482 + 86 258 228721 15 16 15 16 49 101 25 chain 281331 chrY 59373566 + 6007691 6011265 HERVH-int 3825 + 24 3825 14572 309 1 0 197 1 0 10 1 0 5 0 1 24 1 0 10 1 0 10 4 0 9 0 32 14 9 7 4 1 0 27 2 0 15 2 1 16 21 0 8 0 1 5 2 1 49 1 0 450 16 1 455 4 31 290 0 4 252 1 0 35 0 1 553 1 0 5 1 2 212 9 11 12 1 2 13 20 230 262 0 2 223 chain 346652 chrY 59373566 + 6013643 6017541 L1PA3long 6157 - 0 3885 11705 149 1 2 417 18 2 191 1 0 431 0 1 1263 0 1 4 1 2 1422 chain 107443 chrY 59373566 + 6017544 6018900 L1P1 4361 + 670 2030 34850 32 15 8 90 3 0 6 23 26 203 0 13 756 0 1 113 0 1 86 4 0 25 chain 13245 chrY 59373566 + 6029834 6029978 L1PA3long 6157 - 0 144 147306 144 chain 49803 chrY 59373566 + 6035287 6035876 LTR10C 591 - 0 591 59155 79 1 3 207 0 1 14 1 0 287 chain 73293 chrY 59373566 + 6044494 6045381 L1P1 4361 + 58 947 46888 245 0 1 249 0 1 393 chain 79177 chrY 59373566 + 6045381 6046263 L1PA4 6152 + 5269 6151 43962 882 chain 54403 chrY 59373566 + 6052865 6053474 L1PA4 6152 - 0 614 56093 6 0 5 603 chain 18928 chrY 59373566 + 6080896 6081132 MSTA-int 1630 + 1389 1624 130300 167 1 0 68 chain 504893 chrY 59373566 + 6156720 6162927 L1PA4 6152 - 9 6152 6543 136 3 4 183 0 3 509 0 1 318 140 0 59 0 1 180 2 3 242 0 1 230 0 1 75 0 1 34 1 0 49 0 1 223 0 2 204 1 2 9 0 24 471 1 0 47 0 4 521 0 1 103 17 28 153 0 1 438 0 1 486 0 1 935 1 21 292 0 1 70 0 3 6 9 6 59 chain 161268 chrY 59373566 + 6163722 6165617 L1PA4 6152 + 4242 6143 23156 369 0 1 135 1 2 35 1 2 196 0 1 324 0 1 697 1 2 136 chain 221063 chrY 59373566 + 6196907 6199454 L1PA3long 6157 - 410 2965 17812 541 4 5 840 0 4 463 0 1 219 0 1 410 0 1 70 chain 409112 chrY 59373566 + 6199456 6205049 L1PA3long 6157 + 1431 6149 9829 340 0 1 51 0 1 4 1 0 1347 1 2 13 929 44 28 0 1 1433 0 6 1203 0 1 243 chain 37923 chrY 59373566 + 6246723 6247475 L1PA3long 6157 - 8 467 72245 136 1 2 186 294 0 135 chain 253114 chrY 59373566 + 6298691 6301639 L1PA4 6152 - 9 2965 16072 20 0 1 135 9 12 421 0 1 252 1 0 280 11 12 373 3 1 275 0 4 673 0 1 495 chain 17855 chrY 59373566 + 6301639 6301840 L1PA4 6152 + 2982 3183 132075 201 chain 66725 chrY 59373566 + 6328503 6329239 L1PA2 6032 + 5288 6024 49768 736 chain 225363 chrY 59373566 + 6352765 6355916 HERV9-int 5642 + 0 2999 17567 7 7 0 378 15 8 41 0 2 56 45 5 99 13 8 10 5 0 44 5 6 49 0 4 74 1 0 304 80 0 11 3 0 405 1 4 599 40 25 733 11 12 115 chain 3887 chrY 59373566 + 6359152 6359198 LTR12 884 + 823 869 209057 46 chain 178766 chrY 59373566 + 6364950 6394276 L1PA4 6152 - 0 2607 21099 6 0 5 137 7 0 1037 26717 0 1422 chain 33919 chrY 59373566 + 6366417 6366813 L1PA4 6152 + 4297 4700 77742 25 0 1 25 0 4 314 0 2 32 chain 86253 chrY 59373566 + 6373939 6375870 MER11C 1089 - 10 1089 41056 89 0 2 36 1 3 120 1 0 261 6 5 149 0 6 274 861 0 127 0 1 6 chain 66724 chrY 59373566 + 6374889 6375627 L1PA2 6032 + 5285 6028 49772 727 0 5 11 chain 45069 chrY 59373566 + 6384156 6384710 L1PA5 6144 - 12 567 62972 105 0 1 449 chain 19409 chrY 59373566 + 6384710 6384947 L1PA5 6144 + 5328 5566 128923 199 2 3 36 chain 23389 chrY 59373566 + 6392595 6392854 L1PA4 6152 - 925 1184 113706 259 chain 81176 chrY 59373566 + 6394276 6395199 L1PA4 6152 + 5221 6152 42812 60 0 1 18 0 1 296 0 6 549 chain 69668 chrY 59373566 + 6445893 6446732 L1PA6 6164 + 5333 6162 48541 472 7 0 325 1 0 24 2 0 8 chain 159274 chrY 59373566 + 6449744 6451583 L1PA5 6144 - 0 1853 23431 233 7 11 538 0 3 61 1 5 961 0 3 38 chain 20372 chrY 59373566 + 6451591 6451811 L1PA5 6144 + 4017 4237 125986 220 chain 5604 chrY 59373566 + 6451825 6451905 MLT2A2 560 + 484 550 189051 8 14 0 58 chain 39553 chrY 59373566 + 6471221 6471962 LTR12_ 688 - 0 688 69953 157 136 0 37 13 120 111 3 0 8 0 3 108 24 0 14 41 0 35 0 41 54 chain 2065 chrY 59373566 + 6471844 6471866 LTR12_ 688 - 611 633 238019 22 chain 83256 chrY 59373566 + 6471962 6473081 MER61-int 3695 - 2589 3690 42230 189 13 0 146 0 2 127 3 0 99 7 6 125 1 2 138 2 1 88 4 5 4 1 0 120 3 1 7 1 0 41 chain 4314 chrY 59373566 + 6482930 6482982 L1PA17 2846 - 2173 2225 203046 52 chain 452155 chrY 59373566 + 6494825 6499995 L1HS 6032 + 1 5182 8689 19 4 5 123 2 0 8 0 2 92 7 6 698 5 8 152 1 0 55 0 1 1402 0 5 1297 0 3 1305 chain 71463 chrY 59373566 + 6500001 6500835 L1PA3long 6157 + 5317 6156 47712 307 3 4 285 7 11 232 chain 69309 chrY 59373566 + 6507128 6507943 L1PA7 6471 - 12 825 48678 261 0 1 66 4 1 328 1 0 98 0 1 57 chain 87644 chrY 59373566 + 6530646 6531747 MER11A 1151 + 0 1151 40516 79 0 8 143 1 0 64 0 11 192 0 2 5 7 5 174 1 2 85 2 1 85 0 33 84 0 3 5 3 0 104 1 0 66 chain 128606 chrY 59373566 + 6533819 6535363 LTR12C 1709 - 0 1709 28416 481 0 4 107 12 9 32 0 2 160 0 161 439 1 0 4 0 1 229 1 2 78 chain 38201 chrY 59373566 + 6538097 6538616 MLT2A2 560 - 0 559 71835 147 0 11 10 1 0 46 6 38 120 7 5 182 chain 202075 chrY 59373566 + 6590214 6592615 L1PA6 6164 + 3737 6149 19061 781 0 3 128 1 0 82 0 3 572 0 2 18 0 1 67 0 2 166 0 1 374 1 0 110 0 1 101 chain 74674 chrY 59373566 + 6616929 6617896 LTR5_Hs 974 + 0 974 46177 279 0 1 9 0 1 177 0 1 100 0 1 9 1 0 78 1 0 163 8 15 16 23 21 103 chain 15289 chrY 59373566 + 6621449 6621634 L1PA7 6471 - 10 195 140513 185 chain 502543 chrY 59373566 + 6637027 6642917 L1PA5 6144 - 0 5894 6698 2079 2 1 840 0 2 52 1 0 343 0 2 185 4 0 174 10 11 83 0 1 58 0 1 377 0 2 91 0 1 486 8 9 243 0 1 75 1 0 137 0 1 194 2 0 445 chain 33426 chrY 59373566 + 6647785 6648245 LTR2 463 + 0 462 78521 270 0 1 88 38 39 64 chain 37895 chrY 59373566 + 6654102 6654617 LTR10C 591 + 0 591 72292 106 0 72 75 7 8 179 1 3 67 0 1 4 0 1 53 6 5 17 chain 132045 chrY 59373566 + 6662951 6664656 L1PA7 6471 - 5 1705 27627 7 3 0 150 0 2 169 0 1 496 12 11 9 2 1 343 12 10 253 5 4 244 chain 474810 chrY 59373566 + 6681901 6688024 L1PA6 6164 + 0 6150 7886 187 0 1 94 7 8 81 1 27 8 26 0 197 0 1 180 0 21 386 0 1 56 1 0 76 0 2 126 0 5 6 19 9 56 18 16 161 1 2 386 2 1 119 9 11 110 29 8 57 0 4 254 0 1 44 0 3 170 1 2 320 1 0 19 8 0 378 0 2 100 1 0 40 6 7 704 0 1 201 1 0 165 1 0 87 0 1 472 0 1 4 1 0 46 0 1 111 6 18 401 1 12 45 8 9 128 chain 53692 chrY 59373566 + 6688093 6688901 L1PA7 6471 + 5630 6468 56549 69 6 4 41 0 1 39 4 0 28 1 23 24 6 7 151 1 12 39 3 4 204 4 5 26 8 9 6 1 0 12 1 2 123 2 0 9 chain 528989 chrY 59373566 + 6720474 6726481 L1PA3long 6157 + 5 6152 4303 147 0 1 102 1 2 61 6 3 5 0 3 447 0 128 931 1 9 584 0 1 833 0 1 678 5 6 1360 1 0 845 chain 61878 chrY 59373566 + 6748470 6749304 L1PA7 6471 - 2402 3233 51920 5 0 1 4 1 0 368 0 1 152 8 9 32 1 0 142 5 4 4 0 1 103 4 0 5 chain 181167 chrY 59373566 + 6749304 6751642 L1PA7 6471 + 4127 6467 20884 346 23 23 105 0 11 295 4 0 39 4 3 142 6 0 58 0 1 58 1 0 415 0 1 543 0 1 101 0 1 38 0 2 9 2 3 139 4 0 6 chain 6564 chrY 59373566 + 6752094 6752172 L1PA7 6471 + 6069 6146 180750 68 1 0 9 chain 2192 chrY 59373566 + 6752178 6752201 L1PA7 6471 + 6163 6186 236627 23 chain 18568 chrY 59373566 + 6752205 6752442 L1PA7 6471 + 6193 6431 131311 135 0 1 102 chain 47130 chrY 59373566 + 6759620 6761285 HERVS71-int 4705 + 2557 4002 61104 46 8 7 18 1 0 42 3 1 17 2 0 8 2 1 15 41 34 13 3 1 10 1 0 8 120 102 24 127 48 18 1 0 19 1 0 4 1 0 8 1 0 18 71 54 11 25 19 9 1 0 6 1 0 11 4 0 40 1 0 15 13 10 13 8 5 17 2 1 13 1 0 11 3 0 9 1 0 8 17 11 17 28 31 21 18 14 11 6 4 15 1 0 9 11 9 57 26 21 9 1 0 25 1 0 22 17 14 51 9 7 11 2 1 33 1 0 13 2 0 8 1 0 14 16 11 5 1 0 13 43 38 21 10 6 21 6 4 5 1 0 33 4 1 11 14 11 18 2 0 6 1 0 21 6 4 14 1 0 23 1 0 37 chain 5104 chrY 59373566 + 6764094 6764168 L1P1 4361 - 20 92 194045 12 2 1 23 1 0 36 chain 31899 chrY 59373566 + 6768013 6768607 LTR22 571 + 0 531 81013 9 46 0 242 16 5 14 11 12 33 1 2 16 0 1 87 80 69 32 0 2 7 chain 24491 chrY 59373566 + 6769684 6770051 MLT2A1 477 - 84 477 107593 8 10 0 131 0 1 53 0 10 8 16 14 14 4 30 23 0 1 100 chain 222753 chrY 59373566 + 6770051 6773463 HERVL-int 5654 - 0 2894 17723 44 6 31 91 1 2 205 0 3 181 0 4 13 558 0 75 1 0 515 0 8 190 0 1 17 7 3 522 1 0 5 4 5 533 0 1 226 0 1 212 0 1 5 chain 5381 chrY 59373566 + 6790382 6790670 LTR12D 1347 - 620 780 191192 16 145 17 36 37 0 33 9 46 12 chain 1754 chrY 59373566 + 6790442 6790494 LTR12D 1347 - 714 766 195982 52 chain 1302 chrY 59373566 + 6790692 6790719 LTR12D 1347 - 686 713 198778 27 chain 62071 chrY 59373566 + 6806690 6807487 LTR12 884 - 11 884 51868 73 0 1 377 11 22 23 2 0 193 0 66 118 chain 7972 chrY 59373566 + 6814364 6814479 MER4A1 472 - 0 118 171214 67 7 10 41 chain 339772 chrY 59373566 + 6818835 6822839 L1P1 4361 - 327 4357 11904 46 0 3 733 0 8 73 1 0 411 1 0 1134 5 4 906 0 4 158 0 1 73 2 1 333 1 15 127 chain 86149 chrY 59373566 + 6826440 6827454 LTR5A 1029 - 0 1029 41096 92 0 2 788 0 13 134 chain 182566 chrY 59373566 + 6828214 6831082 HERVK-int 6823 - 226 2943 20729 11 5 0 11 14 8 4 1 0 17 34 25 13 1 0 4 1 0 29 1 0 3 1 0 7 1 0 8 32 22 8 1 0 4 1 0 7 5 0 31 2 0 11 1 0 3 1 0 13 1 0 13 2 0 22 163 87 4 1 0 10 6 3 19 1 0 11 17 11 23 1 0 7 2 0 34 2 1 6 0 1 29 34 28 43 1 0 124 1 0 32 1 0 103 1 0 22 2 1 197 42 40 393 1 0 690 1 2 9 2 0 261 4 3 149 0 5 95 chain 4862 chrY 59373566 + 6833680 6833781 HERVIP10FH-int 2884 + 2731 2824 196662 24 1 0 12 9 8 11 9 3 35 chain 37026 chrY 59373566 + 6870612 6871143 HERV1_LTRd 520 - 3 520 73485 117 1 0 6 7 8 26 7 2 280 0 3 6 17 6 9 1 0 54 chain 70542 chrY 59373566 + 6891792 6892814 L1PA8 5853 - 0 1004 48139 15 1 0 4 0 1 73 22 20 37 24 28 9 0 1 4 1 0 53 2 0 38 7 6 162 0 1 48 0 1 156 0 3 184 1 4 84 25 0 72 chain 248805 chrY 59373566 + 6900843 6903998 L1PA7 6471 + 3277 6466 16321 112 1 0 4 1 2 217 1 0 169 11 12 281 1 3 165 5 4 56 0 2 499 0 2 310 0 13 147 0 1 262 0 1 84 0 9 165 0 4 338 0 4 164 1 3 120 2 0 5 0 2 23 5 0 6 chain 6161 chrY 59373566 + 6913542 6913618 MER51-int 1546 - 6 82 183883 76 chain 3080 chrY 59373566 + 6915177 6915211 L1PA3long 6157 - 16 50 223344 34 chain 82819 chrY 59373566 + 6916927 6917977 L1PA6 6164 - 2 1074 42409 143 3 4 406 1 12 228 0 3 52 1 0 58 17 25 141 chain 48538 chrY 59373566 + 6920451 6921043 LTR10C 591 - 0 591 60078 176 10 9 406 chain 3827 chrY 59373566 + 6922180 6922243 MER51B 395 - 15 77 209974 25 6 5 32 chain 62405 chrY 59373566 + 6922248 6923034 LTR17 781 + 0 781 51723 84 0 4 210 10 0 28 0 1 17 0 4 426 4 0 7 chain 41734 chrY 59373566 + 6924809 6925380 LTR10F 562 - 0 561 66983 61 0 1 42 22 0 29 7 11 187 0 3 71 0 4 152 chain 186134 chrY 59373566 + 6925730 6928415 HERVIP10FH-int 2884 - 105 2699 20404 7 1 0 17 1 0 50 1 0 65 4 3 69 16 17 80 0 1 196 1 0 18 33 5 99 1 2 52 0 2 38 8 8 267 1 0 17 16 5 42 19 7 43 9 4 13 67 43 9 3 0 4 1 0 126 6 1 22 10 11 29 2 1 8 1 0 10 3 0 8 4 1 50 1 2 68 0 3 15 0 4 142 3 4 159 0 1 39 0 11 254 1 0 227 8 0 192 6 0 23 chain 45382 chrY 59373566 + 6931227 6931784 LTR10F 562 - 0 562 62612 151 0 1 179 1 4 158 0 1 68 chain 14975 chrY 59373566 + 6963900 6964172 MER4A1 472 - 14 291 141397 12 6 0 41 13 15 115 41 50 44 chain 23962 chrY 59373566 + 6971621 6971907 AluY 311 + 16 303 110553 116 0 1 170 chain 29451 chrY 59373566 + 6975134 6975600 LTR10F 562 - 8 549 86834 160 27 29 94 11 114 22 35 1 94 0 4 23 chain 144725 chrY 59373566 + 6975715 6977828 HERVIP10FH-int 2884 + 782 2820 25365 149 0 1 159 3 4 142 0 4 14 0 3 70 0 1 51 4 1 7 3 0 10 1 0 8 2 1 62 6 1 126 1 0 17 5 2 12 45 25 14 20 3 43 19 7 36 20 9 20 3 2 31 0 5 228 1 0 8 4 5 87 0 1 98 2 1 22 8 7 99 1 0 92 0 1 100 1 0 60 1 0 74 1 0 50 1 0 17 1 0 14 9 3 31 chain 42157 chrY 59373566 + 6978123 6978655 LTR10F 562 + 0 562 66446 204 0 31 43 1 0 284 chain 26495 chrY 59373566 + 6984700 6985012 MER11B 1079 - 765 1079 98065 168 0 2 144 chain 172749 chrY 59373566 + 6997929 7000000 L1PA5 6144 - 70 2152 21739 73 1 0 707 1 0 828 5 18 249 0 1 161 2 1 44 chain 209661 chrY 59373566 + 7000002 7002626 L1P2 5180 - 1177 3828 18512 57 5 6 161 1 0 56 0 3 81 0 1 245 3 4 45 0 1 66 1 13 43 2 1 31 3 0 579 0 1 168 3 6 96 0 1 4 0 1 14 3 0 468 0 4 96 1 2 319 8 13 65 chain 494683 chrY 59373566 + 7002648 7008294 L1PA3long 6157 + 7 6142 7132 1448 10 9 7 0 1 52 0 1 303 0 1 605 0 3 115 2 0 55 1 2 574 4 0 790 0 485 904 0 3 122 0 1 654 chain 5421 chrY 59373566 + 7016749 7016822 L1MA5A 2387 - 81 153 190796 11 1 0 61 chain 15982 chrY 59373566 + 7017456 7017691 MER75B 242 + 13 242 138401 39 15 15 106 4 0 43 3 1 25 chain 553111 chrY 59373566 + 7022156 7028174 L1PA2 6032 - 13 6032 1057 3635 0 1 2383 chain 3941 chrY 59373566 + 7029608 7029652 MLT1B 390 + 288 332 208249 44 chain 416661 chrY 59373566 + 7038423 7043833 HERV9-int 5642 + 11 5446 9616 149 3 7 418 4 5 106 12 12 8 6 0 84 7 15 31 2 0 13 4 0 42 5 6 33 26 26 10 14 14 118 1 0 8 5 0 126 2 1 33 0 2 101 0 1 223 0 1 802 1 0 65 0 1 184 9 8 548 0 3 344 1 2 291 5 10 412 0 8 472 0 8 72 4 5 119 3 4 484 chain 3106 chrY 59373566 + 7045417 7045452 LTR12F 595 + 68 103 222833 35 chain 75190 chrY 59373566 + 7047905 7048864 LTR5_Hs 974 + 0 974 45930 115 24 13 160 0 1 282 0 20 229 7 14 37 2 0 103 chain 4067 chrY 59373566 + 7049127 7049174 HERVIP10F-int 4088 - 1135 1182 206386 47 chain 502967 chrY 59373566 + 7058109 7064152 L1PA5 6144 - 48 6144 6673 701 0 3 108 0 1 65 0 3 5 4 1 480 8 0 259 9 22 25 0 1 73 1 5 149 0 2 9 0 12 71 0 1 368 0 1 276 0 3 567 0 1 348 0 1 759 0 11 46 1 0 234 0 1 5 0 1 303 0 1 4 6 5 104 1 2 137 1 5 299 0 1 617 chain 23559 chrY 59373566 + 7087810 7088099 AluY 311 + 0 286 112801 28 3 0 258 chain 24911 chrY 59373566 + 7099974 7100326 THE1C 375 + 2 363 105277 204 22 30 37 0 2 75 1 0 13 chain 12120 chrY 59373566 + 7101840 7102155 L1PA15 4387 + 4070 4366 151738 30 56 54 31 1 0 22 4 0 10 1 0 48 26 23 26 3 1 12 13 8 21 1 0 10 chain 20267 chrY 59373566 + 7114172 7114505 L1PA8 5853 - 0 327 126323 79 0 1 12 5 4 16 2 1 29 35 33 70 2 0 44 1 0 38 chain 53710 chrY 59373566 + 7114523 7115235 LTR12 884 - 18 884 56541 240 2 1 129 1 2 107 0 114 158 4 45 46 1 0 24 chain 539139 chrY 59373566 + 7117600 7123554 L1PA2 6032 - 4 5969 2961 2311 6 7 665 1 0 237 0 10 342 0 3 1541 1 0 656 1 0 193 chain 38344 chrY 59373566 + 7125800 7126324 LTR10G 522 - 0 522 71661 71 1 3 94 0 1 88 3 0 5 6 4 99 0 1 118 1 0 38 chain 10983 chrY 59373566 + 7127714 7127839 MER41B 635 + 331 456 156263 125 chain 45175 chrY 59373566 + 7130999 7131558 LTR6B 557 + 0 557 62846 93 0 1 222 0 6 37 0 1 45 9 0 132 1 0 20 chain 5368 chrY 59373566 + 7132079 7132151 LTR12D 1347 + 488 591 153772 48 1 32 23 chain 47639 chrY 59373566 + 7132151 7132801 LTR12D 1347 + 441 1339 60743 66 2 0 29 1 32 84 0 2 45 6 23 229 0 200 188 chain 41311 chrY 59373566 + 7156380 7156897 MER41A 554 - 24 541 67519 517 chain 120248 chrY 59373566 + 7174484 7175850 L1PA4 6152 - 0 1370 30966 6 0 5 7 1 0 242 1 0 862 0 1 247 chain 10493 chrY 59373566 + 7223569 7223720 L1MA5A 2387 - 652 797 158277 41 4 0 58 2 0 46 chain 296996 chrY 59373566 + 7253532 7257342 HERV9-int 5642 - 1800 5642 13586 456 0 4 1002 0 1 89 12 27 61 0 4 75 0 1 535 1 3 273 0 3 57 11 0 148 80 0 80 0 85 144 1 0 36 1 2 39 0 4 35 1 0 46 0 1 82 2 1 4 0 1 187 0 2 57 6 7 222 0 1 67 chain 56667 chrY 59373566 + 7257378 7258192 LTR12 884 - 8 884 54742 167 1 103 141 0 10 78 2 0 24 88 0 236 0 41 51 1 0 25 chain 2143 chrY 59373566 + 7257815 7257839 LTR12 884 - 508 532 237216 24 chain 51664 chrY 59373566 + 7258887 7259642 MER4E1 777 + 12 768 57852 5 1 0 29 20 21 27 0 5 56 6 9 179 1 0 198 33 27 200 chain 68555 chrY 59373566 + 7263706 7264492 L1PA3long 6157 - 0 778 49009 555 0 1 111 9 0 111 chain 41772 chrY 59373566 + 7264492 7264961 L1PA3long 6157 + 4867 5343 66937 107 0 7 362 chain 30017 chrY 59373566 + 7270271 7270589 AluYb8 318 - 0 318 84747 318 chain 119172 chrY 59373566 + 7275092 7277704 L1P2 5180 + 461 2974 31344 40 974 867 56 18 27 126 6 7 622 0 2 22 4 0 88 0 1 8 7 4 11 5 0 186 0 1 132 0 2 117 9 13 181 chain 14660 chrY 59373566 + 7294523 7294703 LTR66 600 - 0 197 142388 95 0 16 67 0 1 18 chain 466014 chrY 59373566 + 7296056 7301851 L1PA5 6144 + 0 6141 8187 128 20 34 120 0 1 89 1 12 160 7 10 288 20 20 141 7 6 60 8 7 72 30 21 84 2 228 52 0 1 270 0 2 95 0 1 453 0 1 23 0 4 9 0 2 367 8 79 387 16 24 172 0 1 131 1 2 449 10 8 266 0 2 62 0 8 276 1 0 202 0 5 1159 1 2 135 3 0 10 chain 10186 chrY 59373566 + 7307628 7307813 L1PB1 5432 + 5103 5277 159692 11 1 0 20 1 0 13 1 0 4 12 8 8 2 0 53 2 1 15 1 0 41 chain 39021 chrY 59373566 + 7319951 7320464 LTR6B 557 + 0 543 70713 15 13 42 302 0 1 44 3 0 91 0 1 4 1 2 32 0 1 8 chain 13238 chrY 59373566 + 7338100 7338284 Tigger2 2703 - 167 352 147328 161 8 9 15 chain 438855 chrY 59373566 + 7342254 7348007 L1PA5 6144 - 21 6144 9087 30 1 5 309 1 0 306 0 11 219 0 1 205 0 1 360 7 12 316 0 4 312 134 491 371 4 6 5 3 0 608 0 1 235 0 1 397 17 8 68 0 4 22 0 8 56 0 1 303 0 1 19 1 0 158 5 7 93 13 4 213 25 0 79 0 1 58 1 2 601 2 1 76 7 21 113 chain 2919 chrY 59373566 + 7355471 7355527 MLT2B4 540 - 149 205 226720 20 9 10 20 1 0 6 chain 9632 chrY 59373566 + 7355791 7355909 L1P5 443 - 101 219 162427 118 chain 27846 chrY 59373566 + 7373236 7373533 AluYd8 298 - 1 298 93539 297 chain 126599 chrY 59373566 + 7378290 7379932 L1PA7 6471 - 1308 2950 28920 445 0 2 48 0 4 58 0 1 136 0 1 222 5 4 194 2 1 109 1 0 4 1 3 95 4 0 208 3 0 107 chain 87575 chrY 59373566 + 7379936 7382064 L1PA7 6471 + 5171 6465 40542 257 0 1 8 0 16 24 4 5 19 1 0 40 1 0 4 1 2 77 1 2 20 0 48 11 57 9 79 863 0 101 0 1 94 11 0 318 28 49 109 chain 40059 chrY 59373566 + 7380659 7381153 MER9a2 513 + 0 494 69235 494 chain 13225 chrY 59373566 + 7390381 7390566 THE1D 372 + 189 372 147371 34 4 3 110 2 1 35 chain 132285 chrY 59373566 + 7392800 7394277 L1PA3long 6157 - 1851 3328 27567 794 0 1 340 2 1 341 chain 96709 chrY 59373566 + 7394277 7395393 L1PA3long 6157 + 4324 6147 37569 136 0 3 323 0 701 462 0 2 54 5 6 136 chain 5823 chrY 59373566 + 7406477 7406638 L1MA9 1812 + 1498 1652 186913 28 1 0 9 18 16 15 3 1 10 6 7 6 1 0 25 13 11 26 chain 16949 chrY 59373566 + 7411219 7411434 MER1A 529 - 73 288 135733 215 chain 28091 chrY 59373566 + 7414008 7414304 AluYd8 298 + 0 296 92680 296 chain 13476 chrY 59373566 + 7422140 7422510 THE1B 368 + 1 368 146431 55 2 0 55 0 3 6 5 3 44 76 84 15 75 65 37 chain 3531 chrY 59373566 + 7423950 7423995 L1PA10 4194 + 313 356 214862 22 2 0 21 chain 28645 chrY 59373566 + 7430365 7430949 L1PB1 5432 + 4872 5417 90534 5 0 3 124 0 2 77 25 33 16 0 1 5 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 3 2 14 1 0 42 74 58 10 2 0 24 1 0 23 35 11 13 chain 65233 chrY 59373566 + 7436835 7437695 L1PA6 6164 + 5292 6160 50452 81 0 1 118 21 22 210 1 5 287 6 8 136 chain 524584 chrY 59373566 + 7438097 7444112 L1PA3long 6157 - 1 6157 4717 148 1 0 620 1 3 1487 0 2 284 2 1 348 0 2 44 0 1 351 0 1 164 0 1 491 0 2 75 0 2 304 0 1 920 8 136 597 17 18 153 chain 2778 chrY 59373566 + 7452239 7452304 LTR65 659 - 439 508 229059 15 13 17 5 0 2 5 2 0 25 chain 35298 chrY 59373566 + 7469374 7469845 LTR15 485 - 10 485 75800 15 5 6 57 1 0 74 1 0 39 1 5 128 0 2 23 1 0 126 chain 43560 chrY 59373566 + 7486747 7487308 LTR22 571 - 7 571 64732 83 9 11 172 0 1 297 chain 128635 chrY 59373566 + 7489270 7490822 LTR12C 1709 - 0 1709 28413 427 4 1 53 0 4 107 2 0 6 1 0 115 0 159 523 1 0 4 0 1 200 0 3 5 3 0 101 chain 21077 chrY 59373566 + 7501133 7501379 L1PA4 6152 + 5897 6143 123633 246 chain 21522 chrY 59373566 + 7524522 7524823 L1PA6 6164 - 2 306 122066 4 1 0 69 0 1 71 2 1 5 0 1 123 4 7 22 chain 27368 chrY 59373566 + 7535782 7536070 AluYa5 310 + 21 309 95055 288 chain 27742 chrY 59373566 + 7536070 7536365 AluYa5 310 + 14 309 93899 295 chain 3889 chrY 59373566 + 7541507 7541549 LTR12C 1709 + 1547 1589 209043 42 chain 504513 chrY 59373566 + 7573192 7579308 L1PA4 6152 - 107 6151 6572 507 7 8 501 1 0 606 0 1 67 0 4 412 0 1 256 2 0 172 0 1 59 81 0 78 0 1 100 1 0 958 2 1 658 0 1 441 10 7 143 0 1 4 16 17 86 0 4 214 0 1 30 0 1 270 1 0 433 chain 5326 chrY 59373566 + 7575802 7575861 L1PA4 6152 - 1147 1206 191762 59 chain 5341 chrY 59373566 + 7604144 7604217 MER3 215 - 0 85 191632 55 0 11 14 0 1 4 chain 15149 chrY 59373566 + 7620957 7621143 L1PA4 6152 - 9 194 140917 55 1 0 130 chain 2861 chrY 59373566 + 7621315 7621348 MER11A 1151 + 110 143 227665 33 chain 186388 chrY 59373566 + 7631001 7633351 L1PA6 6164 + 3775 6157 20387 41 0 8 72 1 0 4 0 1 31 7 8 281 0 1 150 0 2 275 2 0 29 13 14 190 4 5 166 0 1 262 0 16 515 0 1 155 9 10 5 0 1 138 chain 3848 chrY 59373566 + 7698840 7698881 L1P3 4156 - 468 509 209659 41 chain 53712 chrY 59373566 + 7698959 7699609 LTR6A 649 + 0 649 56537 432 1 0 217 chain 52942 chrY 59373566 + 7708470 7709120 LTR6A 649 + 0 649 57055 432 1 0 217 chain 124081 chrY 59373566 + 7709233 7710739 L1PA5 6144 - 2785 4295 29645 612 0 1 428 0 1 4 1 2 355 1 2 105 chain 220252 chrY 59373566 + 7710739 7713507 L1PA5 6144 + 3356 6135 17867 325 0 2 201 3 6 601 8 9 187 0 1 4 1 0 213 0 1 57 16 17 232 1 0 8 0 1 25 0 1 47 0 2 388 5 4 115 0 1 126 2 1 37 0 1 166 chain 40786 chrY 59373566 + 7755166 7755719 HERV17-int 4347 - 0 555 68196 118 12 0 12 0 12 185 14 16 212 chain 10487 chrY 59373566 + 7758054 7758232 HERV17-int 4347 - 4161 4334 158301 47 1 0 14 12 10 34 5 4 50 2 1 13 chain 65785 chrY 59373566 + 7774219 7774964 L1PA3long 6157 + 5408 6157 50202 725 0 7 12 3 0 5 chain 26972 chrY 59373566 + 7821480 7821854 HERVK11D-int 613 - 0 456 96368 324 2 1 25 5 88 18 chain 68489 chrY 59373566 + 7829035 7829912 MER11D 897 - 0 895 49048 35 1 0 254 0 19 26 2 1 279 11 12 269 chain 78169 chrY 59373566 + 7859941 7860997 MER11C 1089 - 26 1089 44430 78 1 2 270 0 1 36 1 0 13 1 2 68 0 1 14 48 47 301 0 5 225 chain 69009 chrY 59373566 + 7861987 7863155 HERVK11-int 2540 - 306 1484 48800 35 5 10 78 16 12 69 6 5 16 0 1 6 1 3 163 1 0 105 17 12 107 7 10 100 13 14 141 1 4 53 27 10 17 21 10 19 30 19 27 3 0 8 8 7 22 0 51 34 2 0 10 chain 81449 chrY 59373566 + 7865770 7866855 MER11C 1089 - 16 1080 42988 140 6 7 254 1 0 79 4 5 41 25 4 15 0 1 288 1 0 138 1 0 92 chain 105392 chrY 59373566 + 7885257 7886480 L1PA4 6152 + 4924 6146 35399 1016 1 0 206 chain 238926 chrY 59373566 + 7894611 7897501 L1PA4 6152 - 0 2895 16835 6 0 2 1166 0 1 130 7 6 89 0 1 290 0 2 415 1 0 672 0 1 114 chain 118876 chrY 59373566 + 7897507 7898927 L1PA4 6152 + 1847 3268 31465 501 1 0 4 0 1 82 8 9 824 chain 159341 chrY 59373566 + 7923536 7925390 L1PA4 6152 - 0 1851 23424 31 0 1 741 1 0 619 5 2 457 chain 485308 chrY 59373566 + 7964500 7970613 L1PA5 6144 - 10 6141 7548 127 4 0 14 21 25 597 14 0 84 0 1 40 0 1 70 7 5 4 1 0 29 0 1 803 0 1 656 0 1 120 0 1 41 5 4 87 11 10 171 0 1 29 0 1 39 0 1 69 0 1 576 19 6 56 3 0 739 0 2 143 0 1 280 8 18 60 0 25 10 0 1 376 16 15 46 1 4 453 0 2 284 chain 147297 chrY 59373566 + 7984377 7986060 L1PA3long 6157 + 4470 6157 24996 735 0 1 105 0 1 146 0 2 697 chain 43377 chrY 59373566 + 7989862 7990441 LTR14C 587 - 0 584 64961 20 2 0 51 2 1 11 1 2 132 0 1 19 6 9 329 0 3 6 chain 538502 chrY 59373566 + 8002359 8008376 L1PA2 6032 - 3 6020 3068 857 2 0 94 0 1 221 0 1 506 0 1 1761 1 0 395 0 1 827 1 0 999 0 1 106 2 1 245 chain 4715 chrY 59373566 + 8043136 8043206 LTR19-int 1103 - 136 203 198340 45 1 0 17 2 0 5 chain 60023 chrY 59373566 + 8043292 8043954 L1PA3long 6157 - 6 668 52811 662 chain 72210 chrY 59373566 + 8043954 8044759 L1PA3long 6157 + 4599 5399 47369 249 1 0 529 4 0 22 chain 3251 chrY 59373566 + 8052593 8052633 MER11C 1089 - 898 938 219992 40 chain 498748 chrY 59373566 + 8061507 8067622 L1PA4 6152 + 0 6146 6913 365 5 1 90 1 2 274 1 0 193 0 4 1186 0 1 204 2 0 66 0 4 295 1 0 146 7 9 331 2 0 85 0 3 37 0 1 129 4 3 60 2 3 196 1 4 473 0 1 499 1 0 5 1 2 521 0 18 145 0 3 787 chain 14125 chrY 59373566 + 8073336 8073523 LTR12 884 - 507 723 144126 39 1 2 116 0 28 31 chain 146041 chrY 59373566 + 8090641 8092343 L1PA5 6144 + 4430 6132 25162 1702 chain 36156 chrY 59373566 + 8110479 8110916 L1PA5 6144 - 1814 2250 74703 14 1 0 422 chain 147641 chrY 59373566 + 8110916 8112722 L1PA5 6144 + 4345 6131 24932 71 21 0 700 5 0 177 0 5 512 1 2 319 chain 4732 chrY 59373566 + 8112816 8112988 MER41E 591 + 26 197 198147 48 101 100 23 chain 242770 chrY 59373566 + 8135412 8138260 L1PA4 6152 + 3263 6142 16625 419 0 1 197 0 1 583 0 11 400 0 1 517 0 3 599 0 14 133 chain 136660 chrY 59373566 + 8166478 8168142 LTR12C 1709 + 0 1709 26699 118 1 4 455 6 7 213 0 40 274 1 0 5 3 1 107 0 4 481 chain 14222 chrY 59373566 + 8169400 8169570 L1PA4 6152 + 5709 5879 143813 170 chain 396068 chrY 59373566 + 8173742 8178188 L1PA3long 6157 - 1 4458 10239 632 0 2 208 0 4 402 0 1 140 0 1 2468 0 3 596 chain 68505 chrY 59373566 + 8178188 8179010 L1HS 6032 + 757 1579 48953 92 0 1 4 1 0 64 6 5 71 1 2 583 chain 94615 chrY 59373566 + 8213342 8214550 L1PA6 6164 + 4946 6156 38180 880 0 1 161 17 18 150 chain 128649 chrY 59373566 + 8235237 8236737 L1PA4 6152 - 848 2347 28408 632 8 7 860 chain 67513 chrY 59373566 + 8236754 8237548 L1PA4 6152 + 5342 6136 49437 794 chain 5714 chrY 59373566 + 8240141 8240212 tRNA-Gln-CAA_ 72 - 0 72 187983 6 0 1 65 chain 24859 chrY 59373566 + 8255820 8256109 L1PA4 6152 - 1 290 105573 149 0 1 109 1 0 30 chain 322841 chrY 59373566 + 8276019 8279826 L1PA4 6152 - 9 3827 12492 132 0 1 117 0 1 1516 4 0 332 1 0 102 0 1 28 0 1 20 0 2 336 0 1 45 0 1 332 1 4 72 0 4 638 1 2 130 chain 51428 chrY 59373566 + 8293286 8293854 L1PA2 6032 + 5458 6027 58019 387 0 1 181 chain 365803 chrY 59373566 + 8321481 8325810 L1PA3long 6157 - 1 4377 11210 5 3 0 332 1 0 358 0 1 172 0 4 537 1 3 108 1 2 688 1 2 1257 0 107 11 71 0 251 0 1 11 0 1 35 0 2 142 0 1 59 14 15 271 chain 58783 chrY 59373566 + 8325934 8326620 L1HS 6032 + 1121 1807 53533 686 chain 61866 chrY 59373566 + 8342880 8343620 MER11D 897 - 0 897 51965 287 4 27 368 0 134 81 chain 133285 chrY 59373566 + 8344319 8346058 L1P1 4361 - 33 1742 27375 18 6 5 11 11 1 145 1 0 426 1 2 40 1 2 398 1 0 65 0 1 298 22 1 191 1 2 103 chain 35871 chrY 59373566 + 8353026 8353455 MER9a3 513 - 69 500 75040 83 0 1 148 0 1 198 chain 214656 chrY 59373566 + 8369402 8372011 L1PA4 6152 - 20 2636 18190 161 1 0 471 0 1 191 0 4 261 0 1 37 0 1 460 7 0 44 0 1 139 0 2 435 0 1 241 0 1 104 7 10 50 chain 18670 chrY 59373566 + 8385989 8386232 L1PA6 6164 + 5867 6119 131029 123 5 13 15 0 1 100 chain 56594 chrY 59373566 + 8408307 8408987 L1PA2 6032 - 436 1083 54787 112 36 1 129 0 2 403 chain 39955 chrY 59373566 + 8408987 8409455 L1PA2 6032 + 5561 6032 69387 454 1 4 13 chain 8116 chrY 59373566 + 8664764 8664861 L1PA4 6152 + 6053 6150 170405 97 chain 4287 chrY 59373566 + 8669988 8670057 L1PA16 3655 - 1062 1132 203389 17 7 8 45 chain 35232 chrY 59373566 + 8671045 8671501 LTR2 463 + 6 463 75879 354 14 15 88 chain 454561 chrY 59373566 + 8672285 8679270 HERVE_a-int 7009 + 156 6991 8596 29 3 1 72 2 0 7 5 3 22 1 0 3 1 0 8 1 0 8 1 0 14 20 14 8 1 0 7 5 3 4 1 0 19 28 0 11 27 25 24 2 1 42 6 5 18 1 0 53 1 0 35 1 0 98 1 0 12 2 1 16 2 1 26 6 5 14 1 0 48 5 3 27 1 0 67 1 0 27 1 0 7 7 6 67 2 1 32 1 0 40 2 0 14 4 3 49 1 0 21 31 35 17 2 1 6 1 0 16 1 0 20 0 3 4 5 0 7 1 0 10 1 0 6 1 0 4 1 0 49 11 9 57 1 0 6 1 0 31 1 0 116 1 0 19 1 0 20 1 0 11 1 0 10 44 35 9 0 5 35 1 0 24 1 2 11 2 1 62 6 5 31 1 0 6 1 0 34 3 2 35 0 6 25 2 1 17 2 1 20 5 4 11 1 0 55 11 24 15 2 1 25 6 4 26 16 11 17 16 13 113 1 0 30 2 1 12 6 5 35 1 0 45 0 1 122 1 0 29 0 1 375 1 0 477 3 0 469 16 17 113 0 1 867 1 2 391 9 0 127 4 5 7 2 0 10 2 1 67 6 5 8 1 0 41 1 0 23 1 0 41 26 27 19 2 1 11 2 1 240 0 11 6 2 0 43 0 1 58 2 1 12 7 4 57 3 1 20 1 0 11 2 1 80 2 0 138 1 0 42 1 0 28 48 42 37 1 0 21 6 5 10 0 1 16 0 1 14 1 0 4 2 1 23 10 8 54 1 0 11 4 0 26 3 0 54 3 1 27 7 6 24 1 0 6 17 14 25 7 5 28 4 2 15 32 24 25 chain 33091 chrY 59373566 + 8679301 8679761 LTR2 463 + 0 463 79066 72 0 1 176 0 1 109 39 40 64 chain 28460 chrY 59373566 + 8690208 8690518 AluYa5 310 - 0 310 91336 310 chain 73521 chrY 59373566 + 8697902 8698964 HERV9-int 5642 + 1951 4822 46774 297 0 1 68 5 6 136 0 1 10 1 0 6 67 63 296 5 1800 146 0 14 17 0 2 8 chain 27654 chrY 59373566 + 8724614 8724915 AluYa5 310 - 12 310 94200 172 3 0 126 chain 23359 chrY 59373566 + 8730966 8731272 LTR2C 499 + 192 499 113878 189 1 0 4 0 1 50 1 2 61 chain 249998 chrY 59373566 + 8732381 8736336 HERVE-int 4064 + 0 4063 16256 393 0 1 130 0 1 85 1 2 198 0 1 45 1 0 7 0 1 96 0 1 4 1 0 60 5 4 36 21 17 63 20 798 115 0 3 309 702 24 86 9 15 52 1 0 4 0 1 104 4 5 10 9 10 483 1 0 242 2 0 580 0 1 76 chain 42793 chrY 59373566 + 8734017 8734612 LTR6A 649 - 0 588 65668 62 1 0 50 0 1 96 10 4 47 14 13 270 1 0 11 0 1 33 chain 37582 chrY 59373566 + 8738982 8739500 LTR2C 499 + 0 499 72710 172 41 20 178 0 1 65 1 2 61 chain 198420 chrY 59373566 + 8739560 8741997 L1PA5 6144 - 2 2423 19326 145 19 26 862 1 2 76 24 4 1128 4 0 178 chain 86099 chrY 59373566 + 8761265 8762337 MER11C 1089 + 0 1073 41120 591 5 6 79 1 0 210 0 1 186 chain 122943 chrY 59373566 + 8785528 8786947 SVA_C 1631 - 2 1590 30068 540 0 1 86 1 0 26 0 134 98 2 0 66 0 37 600 chain 18984 chrY 59373566 + 8799673 8799985 L1PA6 6164 + 5849 6161 130145 142 1 0 4 12 13 80 36 0 8 1 37 28 chain 3153 chrY 59373566 + 8807301 8807339 LTR12C 1709 + 680 718 221885 38 chain 501468 chrY 59373566 + 8811089 8817213 L1PA5 6144 - 4 6130 6759 174 0 1 152 0 1 1031 0 3 150 1 0 19 4 0 598 1 0 4 0 1 198 1 2 118 4 1 4 0 1 173 1 0 250 0 1 100 1 0 244 25 27 574 1 0 1286 2 0 15 0 4 63 0 1 930 chain 257631 chrY 59373566 + 8824077 8827393 L1PA4 6152 + 3163 6151 15835 84 0 1 1102 0 8 109 0 6 656 0 1 344 344 0 423 0 1 236 1 0 17 chain 22746 chrY 59373566 + 8826396 8826707 AluY 311 + 9 311 116840 50 4 0 139 6 1 112 chain 8511 chrY 59373566 + 8848040 8848315 LTR12D 1347 + 584 728 168240 88 129 4 17 19 13 22 chain 6014 chrY 59373566 + 8848159 8848225 LTR12D 1347 + 436 502 185103 66 chain 299186 chrY 59373566 + 8849889 8853756 HERV9-int 5642 + 1396 5270 13470 427 8 9 404 0 1 39 2 3 89 4 0 8 4 8 637 4 3 59 0 1 66 4 0 55 6 5 807 3 12 105 0 3 5 6 3 625 0 1 460 1 0 39 chain 21116 chrY 59373566 + 8878699 8878948 L1PA2 6032 + 5783 6031 123505 222 0 1 13 2 0 12 chain 5804 chrY 59373566 + 8911090 8911243 LTR12 884 + 162 365 187101 42 47 47 11 1 26 28 5 30 19 chain 216489 chrY 59373566 + 8911788 8914954 HERV9-int 5642 + 5 2914 18090 291 0 3 112 0 4 68 0 1 116 13 9 107 0 4 68 17 16 113 21 14 115 159 0 61 9 6 360 9 44 464 1 0 53 4 5 220 132 0 106 0 1 247 7 8 293 chain 42770 chrY 59373566 + 8971294 8971786 L1P1 4361 - 33 523 65379 23 1 0 154 1 0 313 chain 106763 chrY 59373566 + 8971786 8972947 L1PA2 6032 + 4870 6032 35043 308 0 1 853 chain 4737 chrY 59373566 + 8979400 8979504 HUERS-P3-int 2218 - 903 1009 198094 13 5 6 40 24 25 22 chain 285790 chrY 59373566 + 8983383 8987077 HERVK9-int 4720 - 3 4662 14298 76 1 0 210 0 31 536 1 2 380 0 2 184 0 1 420 6 7 32 1 3 114 0 6 167 1 2 124 0 924 131 2 0 111 1 0 198 24 25 47 1 2 449 1 0 7 13 14 202 0 1 147 13 12 18 1 0 8 1 0 66 chain 39754 chrY 59373566 + 8988424 8988936 MER9a2 513 - 0 513 69683 95 1 2 416 chain 38950 chrY 59373566 + 9024926 9025412 LTR12C 1709 + 1118 1709 70800 106 0 4 188 0 102 107 1 0 84 chain 97150 chrY 59373566 + 9031965 9033040 L1PA2 6032 - 1342 2418 37420 763 1 2 311 chain 122152 chrY 59373566 + 9033040 9034383 L1PA2 6032 + 4686 6030 30329 234 0 1 1109 chain 74054 chrY 59373566 + 9046793 9047848 MER11C 1089 - 25 1089 46484 145 1 0 53 0 1 127 0 1 38 1 0 7 3 7 13 1 0 94 47 46 146 1 0 64 0 1 4 0 4 44 13 22 87 11 5 155 chain 42878 chrY 59373566 + 9063080 9063575 L1PA3long 6157 - 0 496 65560 154 0 1 341 chain 39045 chrY 59373566 + 9075656 9076161 MER9a2 513 + 2 498 70671 147 19 10 339 chain 268378 chrY 59373566 + 9077459 9082181 HERVK9-int 4720 + 58 4717 15267 66 1 0 9 1 0 19 44 44 231 1118 0 12 0 1 88 0 1 4 2 1 438 0 165 62 27 27 28 0 1 128 0 1 112 0 924 20 0 1 62 0 1 186 6 1 122 49 0 117 0 3 667 0 14 416 16 17 4 1 0 45 0 1 298 20 19 286 0 1 4 1 0 12 chain 79061 chrY 59373566 + 9077876 9078909 MER11C 1089 + 40 1073 44025 15 9 12 294 0 1 71 5 6 136 2 0 101 1 0 284 13 11 102 chain 4577 chrY 59373566 + 9112402 9112781 HERVK14C-int 762 - 3 199 199911 23 282 102 13 4 3 50 2 0 5 chain 19382 chrY 59373566 + 9117032 9117286 LTR14C 587 - 331 587 128999 131 5 6 54 0 1 64 chain 257754 chrY 59373566 + 9408326 9411474 L1PA4 6152 - 2913 6065 15824 1389 1 2 404 1 10 197 5 6 14 0 1 339 0 1 145 0 1 199 31 19 376 9 11 38 chain 246311 chrY 59373566 + 9411474 9414373 L1PA4 6152 + 3239 6139 16425 659 1 0 369 7 8 218 4 0 330 0 1 136 0 1 88 0 1 250 0 1 264 0 1 535 0 9 7 10 1 21 chain 483351 chrY 59373566 + 9427325 9434549 L1PA3long 6157 + 0 6147 7616 153 9 10 64 2 0 525 0 3 21 0 128 55 1537 0 74 0 1 319 1 10 96 4 5 215 1 3 96 0 11 536 0 1 50 0 1 312 1 0 125 0 12 33 7 315 80 0 1 43 2 1 218 0 4 99 14 0 673 0 2 346 1 0 114 5 0 629 1 0 763 chain 45675 chrY 59373566 + 9428165 9428649 L1HS 6032 - 830 1314 62162 484 chain 78407 chrY 59373566 + 9428649 9429493 L1HS 6032 + 5190 6032 44316 335 2 0 507 chain 44091 chrY 59373566 + 9441080 9441586 L1PA3long 6157 - 0 506 64105 506 chain 41996 chrY 59373566 + 9451273 9451762 L1PA3long 6157 - 15 500 66632 122 12 8 355 chain 80570 chrY 59373566 + 9471603 9472526 L1PA4 6152 - 0 931 43058 543 0 6 297 5 6 18 0 1 60 chain 175711 chrY 59373566 + 9472526 9502679 L1PA4 6152 + 3545 6140 21373 520 0 1 889 27546 0 295 1 2 624 0 1 119 15 0 144 chain 23258 chrY 59373566 + 9473947 9474206 L1PA4 6152 + 4968 5227 114396 259 chain 19522 chrY 59373566 + 9481879 9482116 L1PA5 6144 - 578 816 128587 36 2 3 199 chain 44400 chrY 59373566 + 9482116 9482680 L1PA5 6144 + 5577 6140 63692 233 0 1 196 7 5 128 chain 11733 chrY 59373566 + 9491842 9491975 MER11B 1079 + 0 134 153330 8 0 1 125 chain 65317 chrY 59373566 + 9492087 9492822 L1PA2 6032 - 5 747 50417 11 0 4 335 1 4 388 chain 77260 chrY 59373566 + 9492822 9493766 MER11C 1089 + 121 1073 44848 287 0 6 149 6 5 261 1 0 120 1 3 41 0 2 78 chain 33919 chrY 59373566 + 9500817 9501213 L1PA4 6152 - 1452 1855 77743 39 0 2 307 0 4 25 0 1 25 chain 11405 chrY 59373566 + 9508458 9509199 LTR12 884 - 15 718 154675 46 550 445 40 0 1 49 14 80 42 chain 2816 chrY 59373566 + 9509006 9509054 LTR12 884 - 506 621 211046 40 7 74 1 chain 284166 chrY 59373566 + 9510871 9514891 HERV9-int 5642 - 836 5642 14407 186 3 0 6 13 19 38 6 7 188 7 5 405 18 953 115 11 12 733 40 25 599 1 4 405 3 0 6 80 0 309 1 0 74 0 4 49 5 6 41 6 1 12 13 8 99 45 5 56 0 2 41 15 8 156 6 7 215 7 0 7 chain 66930 chrY 59373566 + 9541140 9541876 L1PA2 6032 - 8 744 49672 736 chain 17855 chrY 59373566 + 9568539 9568740 L1PA4 6152 - 2969 3170 132076 201 chain 253206 chrY 59373566 + 9568740 9571688 L1PA4 6152 + 3187 6143 16069 501 0 1 667 0 4 275 3 1 373 11 12 280 1 0 252 0 1 421 9 12 140 0 1 15 chain 26295 chrY 59373566 + 9622895 9623510 L1PA3long 6157 + 5690 6011 98850 134 294 0 187 chain 12478 chrY 59373566 + 9623511 9623647 L1PA3long 6157 + 6013 6149 150351 136 chain 407411 chrY 59373566 + 9675347 9680941 L1PA3long 6157 - 8 4726 9865 243 0 1 1203 0 6 1433 0 1 28 929 44 18 1 2 851 2 1 490 1 0 4 0 1 51 0 1 340 chain 257045 chrY 59373566 + 9680943 9683900 L1PA3long 6157 + 3192 6157 15875 70 0 1 412 0 1 217 0 1 463 0 4 840 4 5 951 chain 161054 chrY 59373566 + 9714774 9716669 L1PA4 6152 - 9 1910 23187 136 1 2 697 0 1 324 0 1 196 1 2 35 1 2 135 0 1 369 chain 507099 chrY 59373566 + 9717464 9723673 L1PA4 6152 + 0 6143 6388 144 0 1 292 1 21 935 0 1 488 0 1 436 0 1 153 17 28 103 0 1 521 0 4 47 1 0 471 0 24 9 1 2 204 0 2 223 0 1 52 1 0 32 0 1 74 0 1 473 2 3 180 0 1 53 141 0 323 0 1 510 0 3 183 3 4 136 chain 249573 chrY 59373566 + 9765691 9769129 L1PA7 6471 + 3023 6469 16278 104 0 9 89 11 19 161 8 0 94 1 0 315 70 63 131 2 0 112 12 13 102 15 15 24 0 2 86 19 16 32 2 0 254 1 5 175 1 2 71 10 9 132 8 5 424 0 1 133 8 7 70 0 2 123 4 5 445 0 8 176 1 0 12 chain 562497 chrY 59373566 + 9778739 9784760 L1HS 6032 + 2 6030 285 2215 0 7 3806 chain 542504 chrY 59373566 + 9799220 9805359 L1PA3long 6157 - 0 6151 2427 227 0 1 538 0 1 749 1 0 467 6 7 994 0 6 610 0 1 486 1 0 1040 0 1 700 8 11 312 chain 44473 chrY 59373566 + 9818184 9818753 LTR22 571 + 0 571 63611 474 5 7 90 chain 4125 chrY 59373566 + 9822539 9822585 L1PA4 6152 + 5777 5823 205577 46 chain 27255 chrY 59373566 + 9822585 9822892 L1PA4 6152 + 5839 6146 95419 307 chain 2911 chrY 59373566 + 9830592 9830623 THE1A 353 + 322 353 226856 31 chain 36920 chrY 59373566 + 9832313 9832714 L1PA3long 6157 + 5754 6155 73632 401 chain 20908 chrY 59373566 + 9884804 9885131 LTR7B 505 - 26 505 124251 4 0 1 23 11 10 26 7 8 55 0 74 23 0 20 12 0 48 4 1 0 53 1 11 107 chain 23264 chrY 59373566 + 9890988 9891363 LTR7B 505 - 10 505 114365 15 2 0 5 0 1 20 14 13 16 0 4 69 0 41 21 2 1 23 27 95 56 0 10 105 chain 45650 chrY 59373566 + 9892262 9892845 LTR14C 587 + 0 587 62352 60 1 2 322 0 1 25 0 1 40 1 2 134 chain 83342 chrY 59373566 + 9899346 9900346 L1PA5 6144 + 5128 6128 42183 166 1 0 221 2 3 610 chain 9860 chrY 59373566 + 9925428 9925551 L1HS 6032 + 15 138 161283 123 chain 37329 chrY 59373566 + 9928999 9929461 LTR2 463 + 0 463 73052 372 8 9 82 chain 341245 chrY 59373566 + 9946405 9950695 L1P1 4361 - 51 4360 11861 160 1 0 215 1 2 116 1 2 311 5 6 261 0 1 190 5 6 495 0 1 516 0 2 219 0 2 103 1 2 140 9 8 6 0 2 88 0 1 728 1 2 78 1 2 166 6 10 442 12 13 13 chain 70228 chrY 59373566 + 9962010 9962911 LTR5_Hs 974 - 0 974 48301 63 3 6 30 0 3 159 0 2 248 0 4 320 0 61 78 chain 132947 chrY 59373566 + 9969665 9971179 L1PA3long 6157 - 0 1517 27432 251 0 1 515 0 1 103 0 1 645 chain 63424 chrY 59373566 + 9971181 9971911 L1PA3long 6157 + 3904 4634 51273 730 chain 21075 chrY 59373566 + 9975082 9975341 L1PA7 6471 - 4 264 123640 113 0 1 146 chain 66256 chrY 59373566 + 9990597 9991430 L1PA4 6152 - 19 812 49975 107 0 1 139 0 1 490 42 0 55 chain 196048 chrY 59373566 + 9997683 10000000 L1PA4 6152 - 0 2326 19494 150 0 1 612 1 0 214 0 3 863 1 2 351 0 2 14 0 3 111 chain 311625 chrY 59373566 + 10000000 10003808 L1P1 4361 - 541 4342 12940 11 1 0 310 0 1 737 11 4 449 1 2 1167 0 2 178 5 1 637 0 1 301 chain 74309 chrY 59373566 + 10013640 10014530 LTR5A 1029 + 142 1029 46357 5 1 0 751 2 0 131 chain 18477 chrY 59373566 + 10022028 10022291 AluSx1 309 + 0 261 131570 127 27 25 109 chain 46237 chrY 59373566 + 10030652 10031198 L1PA3long 6157 + 5597 6142 61822 438 14 13 94 chain 143152 chrY 59373566 + 10046140 10047755 L1PA3long 6157 + 4539 6157 25629 964 0 1 473 0 2 178 chain 74938 chrY 59373566 + 10052807 10053695 L1P1 4361 - 33 920 46043 23 1 0 151 1 0 177 0 1 535 chain 12021 chrY 59373566 + 10057722 10057853 L1PA2 6032 - 1581 1712 151400 131 chain 138013 chrY 59373566 + 10057853 10059369 L1PA2 6032 + 4513 6026 26479 1394 1 0 112 2 0 7 chain 113088 chrY 59373566 + 10073702 10075072 L1PA3long 6157 - 0 1374 33353 48 5 7 80 1 0 708 0 4 5 3 0 304 0 1 105 0 1 111 chain 406670 chrY 59373566 + 10075820 10080733 L1PA3long 6157 - 31 6157 9891 735 0 1 528 0 1 48 0 1 309 0 4 88 0 1 117 8 9 97 0 1 679 1 2 242 2 1 78 0 1 102 0 1128 604 0 77 22 3 1 19 12 13 473 1 0 579 11 12 148 2 0 5 chain 24677 chrY 59373566 + 13197880 13198264 THE1D 372 - 2 372 106570 177 9 12 18 3 0 54 0 2 7 17 16 8 15 0 76 chain 26178 chrY 59373566 + 13201047 13201355 L1PA6 6164 - 894 1207 97355 147 0 1 160 0 4 1 chain 71765 chrY 59373566 + 13201355 13202240 L1PA6 6164 + 5279 6162 47582 34 1 2 665 1 0 23 14 14 137 2 0 8 chain 28196 chrY 59373566 + 13205291 13205596 AluYb8 318 + 0 305 92322 305 chain 10737 chrY 59373566 + 13230351 13230478 L1PA5 6144 + 6001 6128 157252 127 chain 92931 chrY 59373566 + 13260518 13262096 L1PB 1623 - 181 1525 38676 28 2 1 22 188 0 81 21 7 313 0 1 200 6 8 101 0 1 189 43 22 35 16 15 22 6 5 19 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 19271 chrY 59373566 + 13282170 13283392 L1PA15 4387 - 35 492 129316 20 0 3 5 18 8 20 46 43 33 4 3 13 17 15 4 1 0 55 1 0 26 1 0 39 757 0 29 20 19 60 15 24 38 chain 25129 chrY 59373566 + 13303275 13303570 L1PA5 6144 - 0 295 104132 295 chain 14647 chrY 59373566 + 13322550 13322872 L1MA2 4263 - 124 430 142430 14 3 1 7 2 0 12 1 0 49 9 0 7 1 3 16 1 0 52 16 15 5 1 0 12 31 30 83 chain 9542 chrY 59373566 + 13335752 13335958 MSTA-int 1630 + 1405 1608 162875 27 58 56 28 6 5 87 chain 27460 chrY 59373566 + 13375968 13376347 L1MA3 4352 + 3059 3445 94780 41 8 16 286 4 3 40 chain 418784 chrY 59373566 + 13379013 13384203 L1PA7 6471 - 7 5341 9564 5 3 0 132 1 0 4 1 3 617 0 1 78 0 4 110 0 3 438 0 1 112 18 19 59 7 8 116 0 1 465 0 1 445 6 7 20 0 1 72 0 70 122 2 6 301 4 0 6 0 4 7 1 0 4 0 1 331 0 4 250 1 2 57 1 11 77 1 0 244 0 4 476 0 1 209 8 6 251 0 40 128 chain 153905 chrY 59373566 + 13391386 13393403 HERVK9-int 4720 - 1107 4666 24103 68 0 1 5 1 0 237 21 658 224 0 924 147 0 1 676 16 0 509 9 8 23 1 0 8 1 0 66 1 0 4 chain 33661 chrY 59373566 + 13394743 13395198 MER9a2 513 - 0 513 78153 11 0 4 6 5 1 79 10 0 18 8 10 90 1 67 227 chain 132328 chrY 59373566 + 13395198 13396882 HERVK14-int 1672 - 7 1671 27557 6 1 0 140 1 0 9 2 0 31 1 0 63 1 0 88 0 1 18 0 1 140 28 28 35 1 0 34 3 0 9 3 1 79 1 0 163 2 1 250 1 0 235 2 0 28 1 0 177 1 0 40 1 0 47 1 0 12 1 0 28 chain 22463 chrY 59373566 + 13396977 13397257 LTR14A 344 - 0 344 118184 177 0 4 61 0 60 42 chain 19792 chrY 59373566 + 13411327 13411563 L1PA4 6152 + 5900 6137 127844 96 0 1 140 chain 513704 chrY 59373566 + 13423681 13429794 L1PA4 6152 - 0 6137 5812 13 0 3 244 0 2 525 0 1 1591 6 7 84 2 0 480 0 1 768 1 4 982 1 2 209 1 0 205 0 1 889 1 15 111 chain 3549 chrY 59373566 + 13437198 13437282 MER21C 908 - 157 246 214567 28 29 34 27 chain 3639 chrY 59373566 + 13437877 13437922 MER5A 189 - 132 177 212983 45 chain 150290 chrY 59373566 + 13439835 13441592 L1PA4 6152 + 4383 6152 24565 664 0 1 256 0 4 86 0 4 419 0 1 177 0 1 42 0 1 113 chain 28078 chrY 59373566 + 13446172 13446516 L1P1 4361 - 296 643 92718 132 0 1 46 0 2 166 chain 497394 chrY 59373566 + 13514509 13520606 L1PA6 6164 + 26 6146 6987 108 1 0 10 0 1 62 0 1 28 1 3 174 3 0 54 1 0 50 0 2 9 15 16 20 0 3 390 6 7 244 0 1 711 1 0 181 0 1 230 1 2 56 0 2 433 6 7 308 0 7 49 1 2 107 0 1 392 1 0 5 2 0 113 0 3 1908 0 3 56 1 2 102 1 0 112 1 2 9 1 0 133 chain 169396 chrY 59373566 + 13547016 13548846 L1HS 6032 - 3 1834 22135 460 0 1 1370 chain 68764 chrY 59373566 + 13548846 13549589 L1HS 6032 + 3451 4194 48869 743 chain 4677 chrY 59373566 + 13555188 13555249 MSTB2-int 240 - 95 155 198796 26 1 0 34 chain 108432 chrY 59373566 + 13560175 13561472 L1P1 4361 - 20 1314 34582 12 2 1 23 1 0 155 1 0 1103 chain 184179 chrY 59373566 + 13561477 13563719 L1P2 5180 + 1639 3864 20573 389 1 2 354 0 1 972 26 15 130 1 0 191 0 2 28 15 6 135 chain 275487 chrY 59373566 + 13579562 13582666 L1PA2 6032 + 2919 6026 14899 662 0 1 1207 0 1 566 1 2 668 chain 26652 chrY 59373566 + 13611124 13611430 AluYf4 310 + 0 305 97480 212 1 0 93 chain 14555 chrY 59373566 + 13611492 13611715 L1MA4 2864 - 863 1091 142719 82 6 7 30 4 8 24 0 1 43 2 1 32 chain 16305 chrY 59373566 + 13617390 13617607 L1PA7 6471 - 7 223 137468 151 6 5 60 chain 3368 chrY 59373566 + 13627984 13628022 MLT2A1 477 - 0 38 217713 38 chain 27733 chrY 59373566 + 13633067 13633402 L1PA5 6144 - 17 348 93925 227 13 9 95 chain 190432 chrY 59373566 + 13875629 13877696 L1HS 6032 - 0 2066 20003 13 2 0 586 0 1 1466 chain 79272 chrY 59373566 + 13877696 13878552 L1HS 6032 + 5168 6025 43879 264 0 1 592 chain 39887 chrY 59373566 + 13911301 13911764 LTR2 463 - 0 463 69476 463 chain 6585 chrY 59373566 + 13921365 13921464 L1MA7 2200 + 1758 1856 180575 77 6 5 16 chain 6781 chrY 59373566 + 13944089 13944183 MER39B 650 + 509 602 179104 4 1 0 89 chain 220737 chrY 59373566 + 13967395 13971164 L1PA13 3608 + 113 3468 17834 22 32 28 14 3 0 24 28 17 68 21 19 17 2 1 93 1 0 12 1 0 20 0 2 7 23 13 11 1 0 16 6 4 15 3 1 16 5 4 94 1 2 85 10 15 35 13 14 109 0 1 487 5 0 46 24 22 441 72 70 15 0 1 15 1 0 57 14 14 64 5 6 16 4 0 92 3 4 61 356 0 25 2 1 356 6 7 157 5 4 52 13 14 162 2 1 78 1 0 14 14 10 89 2 0 16 3 1 6 0 2 36 1 0 55 3 0 6 6 4 44 9 5 20 chain 379606 chrY 59373566 + 13977325 13981800 L1HS 6032 - 1505 6032 10764 757 0 2 284 2 1 349 0 2 395 0 1 164 0 1 94 2 45 352 0 2 75 0 2 304 0 1 1440 5 4 252 chain 200555 chrY 59373566 + 13984894 13987482 L1PA7 6471 + 3883 6468 19170 106 0 1 14 13 6 231 0 4 241 1 2 154 0 2 311 1 0 449 1 0 124 12 11 9 0 1 4 0 12 51 1 0 681 0 2 33 0 1 29 17 4 92 3 0 10 chain 2804 chrY 59373566 + 13999621 13999650 LTR12C 1709 - 258 287 212321 29 chain 5570 chrY 59373566 + 13999650 13999755 LTR12C 1709 - 54 187 189377 30 8 7 11 5 35 31 1 0 19 chain 12327 chrY 59373566 + 14019272 14019405 L1PA4 6152 - 945 1078 150903 133 chain 80542 chrY 59373566 + 14019406 14020332 L1PA4 6152 + 5212 6141 43371 89 0 3 837 chain 25564 chrY 59373566 + 14021746 14022117 L1PB4 2604 + 2132 2498 101912 154 2 0 91 4 0 6 1 3 71 10 9 32 chain 10719 chrY 59373566 + 14049826 14049973 L1PB4 2604 - 155 300 157327 62 3 1 82 chain 298261 chrY 59373566 + 14055295 14059053 L1PA4 6152 + 2732 6152 13519 874 343 0 274 0 1 467 0 4 862 0 1 163 1 0 774 chain 513501 chrY 59373566 + 14109318 14115172 L1PA2 6032 - 0 6020 5833 154 0 5 7 5 0 1889 2 0 423 0 1 420 0 1 158 0 4 388 1 3 448 0 1 475 0 156 760 0 3 425 1 0 55 5 4 27 0 1 151 0 1 60 chain 498025 chrY 59373566 + 14118290 14124298 L1PA4 6152 - 0 6152 6953 259 0 1 466 0 1 68 0 5 26 1 3 21 2 1 267 1 0 333 2 0 656 3 4 102 0 1 270 0 1 157 0 1 159 0 1 162 5 6 10 0 1 171 0 107 184 0 5 166 0 3 517 2 3 173 0 3 309 0 1 147 3 12 619 14 15 535 5 6 16 0 1 177 chain 398567 chrY 59373566 + 14128102 14134931 L1PA5 6144 - 7 4915 10151 252 1 0 104 0 5 128 0 1 258 1 4 42 0 1 714 1 0 277 5 9 351 0 1 48 0 1 777 1 2 664 9 8 657 1938 0 352 8 9 21 0 1 7 7 8 206 chain 52379 chrY 59373566 + 14132398 14133012 L1PA3long 6157 - 1272 1883 57176 179 0 1 345 4 0 86 chain 111757 chrY 59373566 + 14133012 14134311 L1PA3long 6157 + 4856 6156 33738 451 0 3 5 6 3 696 1 3 135 1 0 4 chain 25299 chrY 59373566 + 14134938 14135227 L1PA3long 6157 - 0 290 103233 189 0 1 100 chain 22399 chrY 59373566 + 14145925 14146205 L1PA5 6144 + 5866 6142 118485 269 4 0 7 chain 8950 chrY 59373566 + 14153193 14153299 L1PA4 6152 - 1880 1986 165871 106 chain 201080 chrY 59373566 + 14153308 14155712 L1PA4 6152 - 1996 4406 19135 275 1 0 507 2 1 122 0 1 84 1 2 380 0 4 842 0 2 190 chain 153489 chrY 59373566 + 14155724 14157571 L1PA4 6152 + 4290 6141 24160 39 11 12 204 0 1 108 0 1 705 2 1 22 2 1 181 0 1 256 8 11 53 0 1 81 2 0 173 chain 496971 chrY 59373566 + 14160108 14166224 L1PA3long 6157 + 20 6154 7010 554 0 1 135 0 7 19 2 3 498 1 0 13 5 6 725 0 1 224 0 2 477 29 29 68 20 24 25 0 3 836 0 1 217 1 0 217 2 0 894 0 1 552 0 1 455 1 0 146 chain 182531 chrY 59373566 + 14166240 14168422 L1PA4 6152 + 3948 6133 20736 1353 0 1 177 0 1 417 0 1 235 chain 448534 chrY 59373566 + 14177762 14183623 L1PA6 6164 + 0 6159 8802 259 1 2 123 32 28 329 6 3 45 0 17 393 0 1 179 0 1 85 7 11 686 1 0 21 8 9 133 0 2 63 0 2 82 0 2 8 41 3 108 5 1 195 0 1 390 7 8 80 0 1 4 1 0 336 9 10 82 12 9 327 8 99 35 6 8 110 0 1 174 0 3 174 2 0 38 11 10 256 0 2 5 2 0 3 6 0 8 1 221 127 5 11 40 0 1 351 6 7 287 0 1 148 chain 83467 chrY 59373566 + 14191119 14192190 L1PA7 6471 - 15 1090 42129 76 1 2 65 14 15 276 0 1 318 0 1 88 1 0 66 0 1 166 chain 10615 chrY 59373566 + 14195258 14195396 MSTA 426 + 264 405 157751 44 3 6 91 chain 6664 chrY 59373566 + 14203523 14203606 L1PA6 6164 + 4330 4413 179954 83 chain 13580 chrY 59373566 + 14203632 14203790 L1PA6 6164 + 4414 4572 146054 158 chain 123549 chrY 59373566 + 14203790 14205354 L1PA6 6164 + 4585 6160 29860 531 0 1 221 0 1 344 1 36 312 20 0 122 6 0 7 chain 17639 chrY 59373566 + 14214865 14215068 L1PA4 6152 + 5940 6143 133880 203 chain 27140 chrY 59373566 + 14231847 14232152 L1PA3long 6157 + 5852 6157 95794 305 chain 6797 chrY 59373566 + 14241184 14241407 AluJr 308 + 179 274 178974 19 129 0 56 0 1 19 chain 71957 chrY 59373566 + 14246802 14247632 L1PA4 6152 + 5321 6152 47494 450 0 1 380 chain 7925 chrY 59373566 + 14249907 14250009 L1PA6 6164 + 3878 3980 171479 102 chain 26072 chrY 59373566 + 14250010 14250400 L1PA6 6164 + 3980 4336 99741 112 1 0 176 35 2 66 chain 10003 chrY 59373566 + 14250452 14250585 L1PA6 6164 + 4673 4806 160567 133 chain 108050 chrY 59373566 + 14250592 14251941 L1PA6 6164 + 4806 6162 34701 246 0 1 63 1 2 197 1 0 67 0 3 447 1 0 171 8 16 137 4 0 6 chain 26850 chrY 59373566 + 14255270 14255580 L1PA3long 6157 + 5847 6157 96811 310 chain 524523 chrY 59373566 + 14255687 14261708 L1PA3long 6157 + 124 6157 4724 60 0 1 648 0 1 415 1 0 509 0 1 506 2 4 164 0 1 263 1 0 229 0 1 362 1 0 1006 0 1 503 0 3 281 1 2 917 0 1 77 1 2 67 0 1 7 chain 18155 chrY 59373566 + 14263301 14263534 L1PA7 6471 + 6229 6462 132448 83 6 5 5 0 1 139 chain 326252 chrY 59373566 + 14267871 14272303 Harlequin-int 5206 - 9 5081 12336 637 16 17 29 7 6 7 0 1 270 1 2 99 9 12 126 0 1 103 142 621 128 7 10 458 0 17 5 1 2 78 1 0 306 7 6 117 13 11 76 0 2 231 11 127 126 2 3 150 0 1 110 0 1 54 0 1 72 1 0 118 1 3 208 0 1 62 9 8 92 1 0 236 0 10 73 0 5 57 0 1 5 2 1 92 1 0 23 12 13 20 1 2 19 chain 27032 chrY 59373566 + 14274078 14274520 LTR2 463 - 16 460 96173 4 1 0 200 12 17 7 5 0 62 53 56 98 chain 3680 chrY 59373566 + 14278748 14278822 LTR12C 1709 - 981 1055 212237 39 19 19 16 chain 2907 chrY 59373566 + 14278877 14278959 LTR12C 1709 - 506 589 226924 19 39 40 24 chain 245891 chrY 59373566 + 14289020 14291941 L1PA5 6144 - 4 2925 16457 772 0 1 74 1 0 197 11 10 484 0 1 387 1 0 130 0 1 164 1 0 242 1 0 175 1 0 256 0 3 24 chain 80535 chrY 59373566 + 14291944 14292901 L1PA5 6144 + 2215 3205 43374 416 0 32 94 0 1 447 chain 9415 chrY 59373566 + 14293949 14294060 L1PA3long 6157 - 183 294 163486 111 chain 15575 chrY 59373566 + 14294060 14294240 L1PA3long 6157 + 5972 6152 139657 180 chain 2713 chrY 59373566 + 14300810 14300874 L1MC2 1988 + 1777 1842 230044 26 20 21 18 chain 503570 chrY 59373566 + 14301530 14307679 L1PA4 6152 + 1 6141 6630 38 15 0 83 14 0 20 1 15 466 8 6 768 5 6 77 5 6 230 1 0 274 1 2 181 3 1 201 1 0 269 0 1 118 0 1 339 1 0 4 0 1 63 2 0 6 0 1 696 6 0 6 4 10 196 0 1 202 0 1 53 0 1 263 5 6 877 0 3 499 18 17 36 0 2 94 chain 23040 chrY 59373566 + 14310084 14310520 LTR12 884 + 0 574 115448 25 1 0 37 41 0 101 1 3 110 0 67 35 69 180 16 chain 24462 chrY 59373566 + 14332502 14332833 MER41A 554 - 6 337 107750 13 6 5 22 0 2 109 2 0 57 0 1 122 chain 85272 chrY 59373566 + 14341149 14342074 L1PA2 6032 + 5106 6031 41433 925 chain 9345 chrY 59373566 + 14367421 14367579 HERVE_a-int 7009 + 140 289 163835 14 5 2 28 4 2 72 2 0 7 5 3 21 chain 15085 chrY 59373566 + 14379033 14380032 L1PB1 5432 + 4891 5277 141071 104 722 119 24 1 0 4 22 17 9 4 2 50 2 1 14 2 1 41 chain 2853 chrY 59373566 + 14382057 14382101 LTR12 884 - 548 608 227805 23 2 18 19 chain 222784 chrY 59373566 + 14383826 14386993 HERV9-int 5642 - 819 5637 17719 10 0 1 122 1 0 54 0 1795 228 0 3 59 1 2 133 0 4 514 8 7 129 10 22 120 0 2 20 25 17 475 3 0 15 166 6 234 7 0 60 1 0 163 0 5 16 16 15 74 0 1 145 5 14 58 0 3 5 13 10 277 chain 110925 chrY 59373566 + 14390428 14391670 L1PA3long 6157 - 0 1245 33958 18 1 0 212 1 5 1010 chain 21487 chrY 59373566 + 14402319 14402732 LTR21B 408 - 0 402 122193 51 16 36 46 13 31 4 1 0 21 41 0 113 8 6 31 1 0 4 4 1 4 1 0 54 chain 4449 chrY 59373566 + 14404760 14404821 HERVFH21-int 991 - 444 503 201357 12 3 1 46 chain 21303 chrY 59373566 + 14424637 14424902 LTR9 672 + 11 276 122845 265 chain 33330 chrY 59373566 + 14432432 14432908 LTR15 485 + 0 478 78687 107 0 1 16 4 0 26 0 2 4 0 1 124 0 4 59 3 2 21 8 9 61 1 0 5 2 0 14 0 1 21 chain 34278 chrY 59373566 + 14441695 14442166 LTR15 485 + 0 478 77241 107 0 1 42 0 2 125 0 4 88 32 34 34 1 0 5 2 0 14 0 1 21 chain 9355 chrY 59373566 + 14442179 14442313 HERVK14-int 1672 + 24 156 163780 6 1 0 11 1 0 37 0 1 8 2 1 68 chain 55125 chrY 59373566 + 14445001 14445833 LTR12 884 - 0 884 55626 207 104 0 42 3 0 7 0 3 8 0 1 216 0 22 31 6 7 90 0 132 118 chain 46699 chrY 59373566 + 14446316 14446991 LTR12_ 688 - 15 688 61459 81 0 1 41 54 2 384 18 1 17 0 66 80 chain 29239 chrY 59373566 + 14448159 14448502 LTR14A 344 + 0 344 87855 123 0 1 220 chain 33133 chrY 59373566 + 14460805 14461324 PABL_B 668 - 0 566 79011 77 6 5 15 8 7 97 37 36 113 1 2 38 5 53 118 0 1 4 chain 59688 chrY 59373566 + 14472981 14473669 SVA_B 1603 + 878 1599 53000 42 4 0 30 0 1 7 4 44 589 4 0 8 chain 99878 chrY 59373566 + 14514078 14515244 L1PA5 6144 - 3 1169 36815 1166 chain 3860 chrY 59373566 + 14545778 14545824 MLT1C 463 - 385 431 209457 46 chain 141445 chrY 59373566 + 14564404 14566260 SVA_A 1864 - 9 1846 25910 470 0 1 174 12 47 20 1 0 11 3 0 36 40 0 72 8 5 104 3 0 19 10 9 85 3 0 17 40 0 22 0 39 32 13 11 102 0 2 559 chain 2471 chrY 59373566 + 14565131 14565171 SVA_A 1864 - 1139 1213 131425 35 4 38 1 chain 2206 chrY 59373566 + 14565492 14565532 SVA_A 1864 - 932 969 65650 19 11 8 10 chain 78229 chrY 59373566 + 14574675 14575643 LTR5_Hs 974 - 0 974 44399 103 22 20 20 0 7 538 0 1 285 chain 16555 chrY 59373566 + 14575645 14575853 LTR7 482 + 254 469 136778 5 0 2 24 6 10 12 0 1 161 chain 10950 chrY 59373566 + 14580676 14580810 PABL_A 660 - 0 135 156403 90 0 1 44 chain 6976 chrY 59373566 + 14583636 14583970 HERVIP10F-int 4088 - 798 1082 177635 6 3 0 7 1 0 15 24 21 17 2 0 4 2 0 18 1 0 7 170 132 57 chain 139622 chrY 59373566 + 14584490 14586536 HERVE_a-int 7009 - 3 2552 26199 15 3 1 22 34 26 14 5 3 27 8 6 24 1 0 14 3 1 6 1 0 30 1 0 27 3 1 54 3 0 29 4 0 4 1 0 58 11 9 24 1 0 3 1 0 48 1 0 57 1 0 7 2 0 5 1 0 13 31 29 16 1 0 44 1 0 136 2 0 80 1 0 16 1 0 9 10 8 29 2 3 24 1 0 3 1 0 15 1 0 32 10 11 59 2 0 23 16 24 134 0 5 32 14 553 198 5 7 531 chain 31120 chrY 59373566 + 14587474 14587967 LTR10F 562 - 0 562 82305 95 8 9 170 15 22 12 0 24 35 33 9 14 3 59 27 0 5 81 chain 37609 chrY 59373566 + 14588639 14589134 PABL_A 660 - 151 660 72672 152 0 1 204 9 8 54 0 9 8 0 5 68 chain 31645 chrY 59373566 + 14589170 14589629 MER4A1 472 + 0 462 81414 184 17 18 178 23 25 57 chain 10743 chrY 59373566 + 14606532 14606707 LTR39 781 - 556 733 157228 65 15 18 13 10 9 72 chain 28808 chrY 59373566 + 14609508 14609821 AluYb8 318 + 0 310 89854 132 3 0 178 chain 31749 chrY 59373566 + 14616497 14616934 MLT2A1 477 + 0 477 81249 167 6 3 9 0 1 23 0 1 51 1 10 119 5 1 10 9 45 37 chain 473483 chrY 59373566 + 14630330 14635985 L1PA5 6144 - 0 6141 7930 140 7 0 705 1 5 349 1 0 990 0 1 7 2 0 269 1 5 421 7 12 251 1 0 78 0 5 1496 0 1 36 1 0 138 0 1 132 50 2 480 12 537 80 chain 3919 chrY 59373566 + 14636055 14636100 MER21B 843 - 30 75 208564 45 chain 3166 chrY 59373566 + 14644202 14644239 L1MB3 1562 - 260 297 221610 37 chain 21568 chrY 59373566 + 14644943 14645199 AluSc5 308 - 17 274 121889 172 0 1 84 chain 58110 chrY 59373566 + 14660144 14660867 L1PA7 6471 - 1 722 53922 6 6 0 6 0 2 58 2 3 523 0 1 122 chain 77121 chrY 59373566 + 14660867 14661801 L1PA7 6471 + 4799 5741 44903 752 4 5 66 0 7 112 chain 245744 chrY 59373566 + 14673373 14676902 HERVH-int 3825 - 0 3825 16469 336 0 1 190 1 0 38 54 58 172 40 39 90 0 1 398 11 8 5 0 3 52 3 25 109 0 3 196 10 15 283 0 3 8 3 0 110 4 6 42 1 21 182 9 0 59 0 1 35 14 21 68 52 26 73 4 5 365 1 0 4 12 163 22 14 13 4 1 0 16 27 146 66 29 28 75 1 3 6 2 0 232 chain 514155 chrY 59373566 + 14681508 14687618 L1PA4 6152 + 3 6141 5761 585 9 7 575 0 3 280 0 4 916 0 8 385 0 5 303 0 2 107 1 0 77 1 3 29 0 1 263 0 1 120 3 0 210 0 2 462 0 4 188 2 0 337 5 6 1006 1 0 109 3 6 110 1 2 22 chain 172921 chrY 59373566 + 14687630 14689804 Harlequin-int 5206 + 429 2609 21720 85 0 3 153 5 4 4 1 0 157 0 2 9 0 1 14 1 0 235 14 10 55 11 14 936 0 4 494 chain 46952 chrY 59373566 + 14691325 14691897 L1P1 4361 - 40 610 61255 16 1 0 157 1 0 397 chain 18253 chrY 59373566 + 14693243 14695193 L1MA1 4479 + 3272 4157 132191 68 1 2 5 1 0 41 2 0 43 10 9 37 1604 547 54 1 0 29 2 0 32 4 3 9 1 0 6 chain 10014 chrY 59373566 + 14702545 14702665 MER4A1 472 - 327 447 160516 120 chain 39664 chrY 59373566 + 14711699 14712236 LTR12F 595 - 0 595 69806 283 1 0 4 5 6 62 15 30 25 0 8 31 2 0 6 0 37 103 chain 441777 chrY 59373566 + 14714490 14720151 HERV9-int 5642 - 44 5642 9003 13 1 0 60 1 0 27 3 1 36 6 4 227 1 0 811 0 1 299 7 11 238 9 6 202 0 1 590 8 10 31 1 2 291 2 3 18 8 7 676 0 1 413 0 1 46 1 0 18 0 4 328 0 12 100 90 7 253 4 2 125 13 7 136 14 4 112 0 7 173 8 11 105 0 4 111 0 5 5 0 3 40 chain 3831 chrY 59373566 + 14718994 14719040 HERV9-int 5642 - 4561 4607 209927 46 chain 74308 chrY 59373566 + 14726282 14727230 L1P3 4156 + 2636 3597 46358 68 0 4 564 3 8 61 17 19 121 0 1 81 0 1 33 chain 500196 chrY 59373566 + 14735969 14742165 L1PA6 6164 - 14 6164 6828 126 1 0 67 0 3 346 0 1 214 0 2 683 1 0 682 0 1 329 10 1 453 0 3 47 6 9 322 14 0 523 15 4 709 34 12 182 2 1 37 1 0 101 0 3 270 1 0 474 5 0 6 12 17 57 15 14 451 chain 19703 chrY 59373566 + 14747288 14747534 AluY 311 + 38 283 128081 95 2 0 98 0 1 51 chain 13795 chrY 59373566 + 14761170 14761512 L1PB1 5432 + 5114 5424 145287 24 30 24 5 2 0 53 2 1 16 1 0 41 7 6 12 1 0 5 64 48 21 1 0 21 1 0 13 1 0 16 1 0 4 chain 23626 chrY 59373566 + 14775846 14776143 AluSp 311 - 5 302 112430 297 chain 8492 chrY 59373566 + 14795827 14795934 LTR8 732 - 540 647 168334 107 chain 87142 chrY 59373566 + 14797338 14798553 MER4-int 2692 + 600 1836 40716 90 0 2 107 8 10 103 1 0 64 0 1 8 2 1 29 0 3 45 0 2 13 0 3 21 1 0 91 0 3 8 1 0 5 0 4 131 14 0 50 0 16 55 2 3 280 1 2 4 0 1 81 chain 22750 chrY 59373566 + 14807182 14807483 AluY 311 + 10 307 116824 122 0 1 103 5 3 36 0 2 23 5 0 7 chain 65364 chrY 59373566 + 14815215 14816060 LTR12 884 - 15 884 50393 88 1 3 333 0 1 5 2 0 58 2 0 20 0 25 65 0 1 245 1 0 25 chain 23242 chrY 59373566 + 14819063 14819349 AluSp 311 - 24 311 114479 121 0 1 165 chain 4997 chrY 59373566 + 14854388 14854495 LTR12_ 688 - 504 594 195175 14 3 2 20 26 10 44 chain 57309 chrY 59373566 + 14909112 14909860 MER4E1 777 - 7 757 54334 218 1 0 5 4 5 53 6 10 15 0 1 64 3 0 379 chain 38353 chrY 59373566 + 14912681 14913165 LTR15 485 + 0 485 71640 144 15 15 158 0 2 158 1 0 8 chain 487732 chrY 59373566 + 14959408 14965580 L1PA6 6164 - 2 6150 7452 9 1 0 126 10 12 424 0 2 164 11 21 49 0 1 39 2 0 152 0 9 65 0 1 672 10 12 39 0 8 30 1 0 52 0 3 264 0 3 385 5 4 299 0 1 125 6 2 58 40 0 19 1 5 167 0 1 26 6 10 62 1 0 242 0 3 5 1 4 31 30 0 161 9 0 560 0 1 37 10 7 104 0 1 393 0 5 317 1 0 42 4 6 59 0 1 295 1 0 48 0 2 32 24 25 446 chain 5879 chrY 59373566 + 14983487 14983603 MLT1A 405 + 261 366 186376 21 23 13 48 4 3 20 chain 127024 chrY 59373566 + 14990029 14991481 SVA_D 2077 + 16 2077 28811 526 0 80 68 0 40 159 0 437 38 0 50 40 0 1 181 0 1 440 chain 22396 chrY 59373566 + 15001304 15001612 L1PA7 6471 - 1 308 118503 4 1 0 7 2 0 136 0 1 6 7 8 145 chain 30997 chrY 59373566 + 15060623 15061099 L1PA8A 6298 + 5821 6291 82518 15 0 14 15 39 19 280 15 16 6 2 0 8 5 6 91 chain 13123 chrY 59373566 + 15073410 15073576 LTR13 1007 - 843 1007 147751 96 2 0 68 chain 50810 chrY 59373566 + 15083397 15083983 L1PA5 6144 - 0 586 58429 586 chain 5246 chrY 59373566 + 15087865 15088032 MER70B 575 - 41 204 192567 55 87 83 25 chain 22077 chrY 59373566 + 15092511 15092766 AluY 311 + 36 292 119895 96 0 1 159 chain 530105 chrY 59373566 + 15097823 15103933 L1PA4 6152 - 6 6152 4175 844 0 4 1359 0 1 259 6 0 789 0 1 402 0 4 281 0 2 270 0 1 46 0 9 347 0 11 272 1 0 280 1 10 505 4 5 444 chain 40460 chrY 59373566 + 15105783 15106341 LTR14 556 - 0 556 68650 91 8 7 105 0 7 6 25 17 323 chain 33235 chrY 59373566 + 15106448 15106922 LTR2B 499 - 0 490 78823 20 0 1 17 1 2 142 1 0 8 0 1 142 15 14 19 4 23 36 3 0 60 1 0 5 chain 41658 chrY 59373566 + 15112448 15113006 LTR14 556 - 0 556 67081 91 1 0 112 26 25 328 chain 512434 chrY 59373566 + 15116161 15122312 L1PA5 6144 + 0 6144 5929 121 0 14 69 1 0 1215 0 1 4 1 0 389 5 12 6 7 0 48 0 1 419 41 25 16 0 1 4 1 0 109 0 2 524 0 1 17 0 1 672 6 0 202 0 1 687 19 8 214 0 2 505 0 5 88 1 0 427 1 2 332 chain 93900 chrY 59373566 + 15140702 15142162 L1P2 5180 - 2401 3532 38342 174 323 0 282 8 0 118 0 2 555 chain 28769 chrY 59373566 + 15140887 15141199 AluYa5 310 - 2 310 90021 185 4 0 123 chain 139742 chrY 59373566 + 15142162 15143793 L1PA5 6144 + 4516 6143 26181 112 1 0 268 0 1 397 1 0 841 3 0 8 chain 395524 chrY 59373566 + 15146242 15151091 L1PA6 6164 + 1278 6159 10255 1043 14 7 598 0 1 94 0 1 162 6 7 49 0 4 187 0 1 59 0 1 16 5 6 15 0 1 162 6 0 89 0 2 171 7 8 118 0 1 30 0 2 48 6 7 205 4 3 432 0 2 84 1 0 7 0 1 19 0 1 86 1 0 75 0 5 29 0 1 4 1 0 198 0 4 90 0 19 237 5 4 333 7 8 139 2 0 5 chain 24962 chrY 59373566 + 15157591 15157881 AluY 311 + 19 303 104993 222 6 0 62 chain 35764 chrY 59373566 + 15168350 15168949 L1PA11 4918 - 340 918 75182 11 2 0 10 6 5 13 49 40 11 1 0 12 3 1 80 1 0 53 18 11 18 1 0 83 9 12 218 chain 491029 chrY 59373566 + 15183545 15189812 L1PA6 6164 + 0 6156 7316 160 2 1 98 27 27 223 1 0 67 0 1 12 0 4 113 101 1 108 0 1 8 0 1 494 0 1 144 0 5 171 1 0 685 8 0 149 7 9 89 0 3 5 3 0 15 8 1 355 9 7 226 0 1 5 0 1 136 18 1 626 10 9 50 0 3 39 2 3 48 0 2 90 0 3 790 0 1 153 2 1 41 0 1 125 1 2 116 0 1 499 2 0 225 chain 8310 chrY 59373566 + 15184248 15184349 L1PA6 6164 + 1447 1553 166206 17 0 5 84 chain 34542 chrY 59373566 + 15199958 15200455 LTR19A 502 + 0 502 76844 219 9 10 8 1 0 74 1 2 22 7 10 112 8 9 36 chain 264585 chrY 59373566 + 15212687 15215624 L1PA3long 6157 + 3217 6157 15460 1178 1 0 889 0 4 869 chain 74589 chrY 59373566 + 15215736 15216703 LTR5_Hs 974 - 0 974 46216 103 20 18 19 8 15 163 1 0 41 0 1 146 0 1 177 0 1 289 chain 32820 chrY 59373566 + 15216751 15217256 LTR21A 479 - 0 473 79501 68 27 25 120 6 9 193 1 0 7 9 7 17 30 0 27 chain 33265 chrY 59373566 + 15222967 15223441 LTR15 485 + 0 478 78780 103 1 2 19 4 0 26 0 2 4 0 1 107 0 1 11 8 12 76 0 1 72 8 5 12 4 5 19 chain 95264 chrY 59373566 + 15230850 15231968 L1PA4 6152 - 0 1116 38016 12 1 4 139 7 0 514 13 14 168 0 1 264 chain 34973 chrY 59373566 + 15231968 15232364 L1PA4 6152 + 4610 5018 76101 272 0 12 124 chain 36008 chrY 59373566 + 15233740 15234211 LTR15 485 + 0 478 74884 107 0 1 42 0 2 125 0 4 88 9 11 57 1 0 5 2 0 14 0 1 21 chain 32588 chrY 59373566 + 15237236 15237735 MER9B 498 - 42 483 79877 34 1 11 199 0 3 117 0 1 12 72 0 64 chain 502026 chrY 59373566 + 15242825 15248429 L1PA3long 6157 - 410 6151 6725 1389 0 4 316 1 0 775 0 1 174 0 1 2003 3 5 175 5 133 618 0 1 82 0 1 63 chain 36979 chrY 59373566 + 15280158 15280705 LTR10F 562 + 38 535 73538 127 1 0 60 59 6 153 0 1 70 0 1 44 10 12 23 chain 354651 chrY 59373566 + 15282137 15286659 HERVK9-int 4720 - 0 4581 11484 13 0 1 5 2 1 78 0 6 104 1 13 194 0 1 371 0 2 55 0 1 313 3 0 232 20 19 11 0 1 499 1 2 33 1 0 61 0 1 33 0 4 9 9 11 195 1 14 347 1 2 46 1 0 31 0 5 409 1 0 8 0 2 6 0 1 154 1 16 425 1 0 292 0 1 44 1 0 474 19 18 17 chain 37410 chrY 59373566 + 15287236 15287731 MER9a3 513 - 0 498 72947 66 0 2 9 1 2 176 5 4 143 12 13 83 chain 550120 chrY 59373566 + 15290986 15297016 L1PA2 6032 - 0 6029 1433 990 0 1 4330 0 1 499 0 1 84 4 0 123 chain 275556 chrY 59373566 + 15297948 15301579 L1P2 5180 + 2 3641 14898 148 1 0 50 1 0 47 5 4 28 4 5 16 29 30 77 0 1 33 0 2 36 5 6 30 1 0 48 8 7 78 0 2 137 1 0 6 1 0 475 0 1 130 0 1 262 0 1 187 0 4 98 2 1 207 10 11 204 1 2 206 0 3 550 1 0 36 8 0 47 5 6 197 0 2 85 0 1 12 0 1 118 chain 95839 chrY 59373566 + 15301580 15302731 L1PA6 6164 - 2 1155 37864 334 0 2 503 0 1 12 1 0 301 chain 7550 chrY 59373566 + 15328811 15329387 L1M3f 2199 + 794 1341 173869 34 437 408 63 1 0 5 5 6 31 chain 41888 chrY 59373566 + 15364406 15364916 MER9a2 513 + 0 513 66778 387 0 1 66 0 2 57 chain 363079 chrY 59373566 + 15366269 15370733 HERVK9-int 4720 + 54 4720 11288 4 1 0 66 1 0 7 2 1 26 7 6 149 0 2 75 14 18 870 0 4 35 4 6 88 0 1 4 1 0 17 0 2 44 0 3 105 0 2 112 1 0 27 0 3 388 26 200 424 0 4 241 0 2 160 0 1 395 1 2 899 0 1 63 0 2 207 chain 41628 chrY 59373566 + 15370733 15371245 MER9a2 513 + 0 513 67120 18 5 6 489 chain 412728 chrY 59373566 + 15375717 15381389 L1PA7 6471 - 57 6019 9725 101 1 2 33 0 2 265 0 2 309 0 2 16 0 7 45 0 7 22 1 2 60 1 0 21 5 21 15 2 1 168 1 2 8 0 1 86 12 12 25 0 1 217 1 0 161 15 14 88 1 0 24 0 8 25 0 1 15 1 0 281 8 7 18 1 2 36 10 16 76 0 1 39 21 239 146 2 1 177 5 14 24 7 11 64 27 19 63 0 1 157 4 3 130 0 4 167 1 0 30 6 10 25 23 8 219 6 7 31 11 6 36 1 0 64 1 0 78 4 15 170 4 3 47 26 18 185 0 1 29 2 0 95 1 0 138 0 1 496 6 10 305 4 0 6 0 3 4 1 0 8 6 24 123 0 4 213 8 14 51 chain 11262 chrY 59373566 + 15386117 15386268 L1PA7 6471 - 118 286 155183 54 1 18 96 chain 6928 chrY 59373566 + 15386268 15386383 L1PA7 6471 + 6354 6466 177977 84 19 16 12 chain 180717 chrY 59373566 + 15395868 15398357 Harlequin-int 5206 + 144 3426 20920 78 6 5 13 0 2 116 0 5 122 3 0 273 0 3 125 0 778 291 4 10 295 3 2 229 5 4 247 6 12 355 140 140 132 4 3 42 chain 7542 chrY 59373566 + 15433186 15433276 MER4-int 2692 + 2590 2680 173923 90 chain 25187 chrY 59373566 + 15443881 15444306 L1P3 4156 + 3703 4132 103814 51 24 25 53 12 15 164 7 5 27 11 16 48 2 0 7 2 1 17 chain 34662 chrY 59373566 + 15450577 15451085 HERV1_LTRc 486 + 0 479 76674 9 0 9 102 1 0 4 0 1 90 13 0 11 16 0 69 23 14 170 chain 35512 chrY 59373566 + 15458922 15459738 HERV1_LTRc 486 + 0 486 75539 71 1 0 19 13 5 121 20 7 70 5 0 49 9 8 12 302 0 124 chain 34789 chrY 59373566 + 15462493 15462940 LTR2 463 + 0 463 76492 71 0 6 31 0 6 12 0 3 137 1 2 155 2 1 12 0 1 26 chain 13276 chrY 59373566 + 15468417 15468663 AluSc5 308 + 21 265 147189 151 69 67 26 chain 29390 chrY 59373566 + 15497972 15498279 AluYa5 310 - 3 310 87118 307 chain 58033 chrY 59373566 + 15529818 15530491 L1PA5 6144 - 22 700 53960 195 0 5 478 chain 34979 chrY 59373566 + 15541417 15541965 LTR10F 562 + 0 562 76213 122 23 0 95 0 14 17 1 2 114 0 11 13 44 56 54 3 2 62 chain 19022 chrY 59373566 + 15558844 15559143 L1PA7 6471 - 2 289 130060 10 2 0 5 3 0 124 43 36 112 chain 54889 chrY 59373566 + 15570040 15570645 L1PA4 6152 - 396 1001 55776 605 chain 34919 chrY 59373566 + 15570645 15571049 L1PA4 6152 + 5740 6151 76311 261 1 8 142 chain 53903 chrY 59373566 + 15574754 15575410 L1PA5 6144 - 7 663 56425 131 7 0 10 1 7 125 0 1 382 chain 317967 chrY 59373566 + 15595890 15600309 L1PA8 5853 - 660 5009 12676 20 4 0 33 0 1 128 3 1 197 0 8 79 11 10 24 77 0 79 0 1 23 12 12 212 1 2 214 2 1 12 0 1 680 0 1 240 1 0 17 4 0 76 25 24 95 6 7 125 11 9 319 1 2 32 0 1 9 9 13 89 0 1 194 1 0 37 0 1 66 6 5 232 1 0 213 1 0 93 1 0 4 0 1 22 4 7 105 6 5 127 0 1 170 21 23 245 chain 46360 chrY 59373566 + 15606402 15607019 L1P3 4156 + 2833 3459 61720 20 0 1 239 0 4 55 10 12 66 0 4 37 0 1 101 4 0 70 0 1 15 chain 489030 chrY 59373566 + 15626315 15632312 L1PA5 6144 - 7 6144 7409 332 1 0 510 3 2 117 6 4 39 0 1 661 0 1 155 9 2 303 0 1 390 3 23 376 0 1 415 3 4 278 2 120 88 0 2 1141 9 0 88 23 23 876 9 10 32 0 14 128 chain 532503 chrY 59373566 + 15635898 15641924 L1PA3long 6157 + 1 6148 3911 152 0 1 210 0 1 403 8 136 1293 0 1 892 0 1 49 0 1 643 0 1 633 0 1 1486 14 0 243 chain 35902 chrY 59373566 + 15653446 15653859 L1PA3long 6157 - 15 430 75014 7 0 1 124 4 5 278 chain 548141 chrY 59373566 + 15671152 15677172 L1PA2 6032 - 0 6029 1687 872 0 4 2101 1 0 801 0 1 1216 0 3 323 0 1 24 0 1 682 chain 44016 chrY 59373566 + 15685439 15686056 L1PA7 6471 + 5859 6459 64186 60 35 14 6 0 1 68 5 7 116 0 1 188 2 1 97 0 1 40 chain 3070 chrY 59373566 + 15697179 15697214 LTR69 548 - 338 373 223564 35 chain 30770 chrY 59373566 + 15714082 15714459 MER11D 897 - 484 862 82917 48 0 1 329 chain 44834 chrY 59373566 + 15717386 15718156 L1PA8 5853 + 5117 5853 63252 18 110 79 307 0 2 43 1 0 14 5 6 22 2 0 70 12 10 12 0 1 34 10 9 16 1 0 93 chain 87022 chrY 59373566 + 15730511 15731572 L1PA4 6152 + 5092 6152 40771 60 0 1 531 0 2 158 0 2 43 0 1 182 8 0 27 7 8 45 chain 56707 chrY 59373566 + 15735242 15735960 L1PA5 6144 - 0 718 54715 13 3 0 124 0 7 11 25 18 89 0 1 40 0 2 413 chain 7101 chrY 59373566 + 15738922 15739220 MER4B 649 + 349 629 176748 17 3 0 19 82 70 23 1 0 7 6 5 19 74 73 47 chain 7028 chrY 59373566 + 15739883 15739970 LTR12 884 + 664 751 177271 87 chain 424013 chrY 59373566 + 15740217 15745929 HERV9-int 5642 + 0 5581 9446 91 0 1 188 14 15 64 0 1 40 0 1 137 17 18 157 3 7 40 4 0 6 22 25 26 9 24 251 80 0 15 3 4 1233 0 6 120 0 1 20 2 3 667 1 0 4 0 1 200 0 2 57 87 8 116 0 1 319 0 1 41 2 1 27 19 11 231 0 1 9 6 7 514 1 2 313 0 3 409 24 22 38 2 0 26 1 0 56 chain 6183 chrY 59373566 + 15743688 15743760 HERV9-int 5642 + 1453 1525 181043 72 chain 56530 chrY 59373566 + 15748654 15749492 LTR12 884 + 0 880 54835 78 12 144 155 2 0 51 1 5 325 92 0 122 chain 19391 chrY 59373566 + 15756420 15756746 L1PA13 3608 + 502 825 128972 14 2 0 18 1 0 96 2 0 15 57 58 17 0 1 104 chain 4549 chrY 59373566 + 15769466 15769516 LTR12F 595 - 545 595 200231 50 chain 39849 chrY 59373566 + 15785541 15786043 MER9a3 513 - 0 503 69536 106 0 2 346 4 1 38 0 2 8 chain 296301 chrY 59373566 + 15794248 15798457 L1PA8 5853 + 1260 5853 13627 149 16 6 40 22 23 49 0 1 205 17 341 70 4 5 255 7 6 312 1 33 123 4 5 24 2 0 5 6 8 47 0 1 252 28 27 106 0 8 26 0 3 263 0 1 85 1 2 19 9 18 214 0 2 6 1 2 21 0 1 147 7 6 545 0 1 37 0 14 261 1 0 60 13 15 375 0 2 5 3 0 64 7 6 20 1 3 24 10 8 61 29 27 25 13 12 18 2 1 92 chain 522023 chrY 59373566 + 15803218 15809194 L1PA3long 6157 + 1 6151 4960 151 0 1 415 0 4 204 0 128 853 1 2 560 0 1 49 1 0 897 0 4 310 0 25 431 0 3 251 0 3 61 0 4 934 1 0 147 0 1 399 0 1 311 chain 24719 chrY 59373566 + 15815100 15815365 AluYa5 310 + 45 310 106334 265 chain 521502 chrY 59373566 + 15833831 15839942 L1PA4 6152 + 6 6122 5008 298 17 16 256 1 0 108 0 1 23 12 5 28 7 9 486 0 1 9 1 0 1137 0 4 538 0 1 169 0 2 2432 0 1 126 5 7 375 0 1 83 chain 29710 chrY 59373566 + 15844413 15844881 L1PB1 5432 - 155 611 85794 40 1 0 16 2 1 53 2 0 5 20 15 13 1 0 20 13 11 51 1 0 5 9 10 216 chain 5662 chrY 59373566 + 15844919 15845027 L1PB1 5432 + 5308 5408 188455 15 12 9 14 2 0 24 1 0 21 1 0 13 1 0 4 chain 526068 chrY 59373566 + 15852603 15858621 L1PA3long 6157 - 0 6157 4581 154 0 1 617 3 5 72 0 4 2824 0 1 1239 0 2 334 0 128 621 26 27 128 chain 30254 chrY 59373566 + 15881786 15882102 AluYb8 318 + 0 316 84044 316 chain 538875 chrY 59373566 + 15882587 15888613 L1PA2 6032 - 4 6032 3006 716 0 1 132 1 0 541 4 2 1592 0 1 852 1 0 454 0 1 609 0 3 1124 chain 507896 chrY 59373566 + 15888717 15894852 L1PA4 6152 - 9 6152 6332 152 7 0 386 27 7 424 0 1 488 1 2 52 5 6 686 0 1 211 5 6 435 1 0 211 8 13 352 3 8 7 5 0 35 0 16 91 7 9 609 0 1 479 0 4 368 0 3 1080 chain 418849 chrY 59373566 + 15918620 15924290 L1PA7 6471 - 4 5712 9561 10 3 0 136 0 3 6 10 7 161 1 0 442 0 2 24 0 1 46 0 6 630 9 8 22 0 5 151 0 1 21 3 0 5 0 3 111 9 12 253 0 5 138 15 16 34 1 2 63 5 1 94 1 2 32 0 1 75 7 10 51 3 4 31 6 7 201 10 11 11 1 0 54 5 4 203 2 0 5 6 8 151 0 3 398 21 0 151 9 0 45 1 6 7 0 3 53 0 6 9 0 1 399 6 7 530 8 9 290 6 1 6 0 30 235 8 9 168 0 1 5 1 0 56 chain 8347 chrY 59373566 + 15924884 15924984 L1P1 4361 - 905 1011 169135 65 0 6 35 chain 97473 chrY 59373566 + 15931392 15932632 LTR12C 1709 - 0 1709 37431 68 0 131 282 0 4 77 1 0 29 3 319 136 23 24 337 1 2 206 0 3 56 0 14 21 chain 74821 chrY 59373566 + 15936563 15937499 LTR13 1007 + 7 959 46103 66 2 0 44 0 4 260 4 5 64 0 1 233 0 5 6 0 5 223 0 2 34 chain 6691 chrY 59373566 + 15941504 15941576 L1PA5 6144 + 6054 6126 179750 72 chain 3871 chrY 59373566 + 15943992 15944034 LTR12C 1709 + 676 718 209285 42 chain 537392 chrY 59373566 + 15957807 15963959 L1PA3long 6157 - 0 6157 3257 1679 0 5 90 0 1 1279 0 2 321 1 0 51 3 1 28 5 0 685 0 3 1587 3 0 6 1 4 31 0 1 199 0 1 183 chain 74419 chrY 59373566 + 15985463 15986508 MER11C 1089 + 0 1063 46308 247 0 9 61 0 4 65 1 0 147 70 71 86 1 5 4 1 0 29 19 20 117 0 1 54 1 0 117 0 1 25 chain 33225 chrY 59373566 + 15995261 15995765 MLT2A2 560 - 0 550 78840 45 0 1 101 3 14 50 13 47 84 22 23 12 1 0 30 1 0 66 1 2 75 chain 85089 chrY 59373566 + 16000008 16001226 LTR12C 1709 + 529 1707 41486 12 5 6 10 0 3 13 1 2 29 5 6 124 41 0 99 3 4 78 0 2 139 0 1 52 12 9 97 20 13 391 40 39 13 0 2 34 chain 3154 chrY 59373566 + 16000207 16000248 LTR12C 1709 + 852 893 117096 41 chain 455936 chrY 59373566 + 16001339 16007062 HERV9-int 5642 + 12 5642 8545 158 4 3 164 0 1 232 0 1 225 2 1 116 4 0 159 79 0 35 4 0 97 0 1 412 1 0 413 0 1 1024 0 25 301 7 0 500 0 8 496 0 2 473 0 1 364 9 8 224 5 3 39 2 0 26 3 2 57 1 0 14 56 27 17 chain 16849 chrY 59373566 + 16009504 16009782 LTR12C 1709 + 769 1037 135985 68 1 0 112 55 5 15 0 41 27 chain 531856 chrY 59373566 + 16021154 16027299 L1PA3long 6157 + 10 6157 3979 421 0 1 301 4 5 1528 1 3 49 0 3 639 0 1 209 3 1 540 1 0 795 0 5 620 14 0 7 1 0 366 0 3 305 3 7 338 chain 10218 chrY 59373566 + 16045998 16046172 MER4B 649 + 479 633 159518 26 26 0 13 5 12 32 1 0 71 chain 23044 chrY 59373566 + 16055423 16055797 THE1D 372 + 0 372 115428 50 9 0 19 9 10 56 0 4 27 32 34 25 1 0 107 4 5 35 chain 514892 chrY 59373566 + 16063707 16069856 L1PA2 6032 + 9 6032 5682 145 1 0 98 5 4 61 1 0 427 8 9 14 139 11 116 0 1 2248 0 2 38 3 0 5 1 4 368 0 2 196 0 1 754 1 0 1514 1 0 5 chain 462624 chrY 59373566 + 16079255 16084561 L1PA3long 6157 - 0 6157 8300 41 0 9 99 0 1 693 0 4 669 0 1 247 1 0 1433 0 1 246 5 0 1170 9 847 7 1 0 215 0 4 470 chain 6131 chrY 59373566 + 16089886 16089982 THE1A-int 1579 + 0 95 184179 35 11 10 50 chain 15371 chrY 59373566 + 16103487 16103682 THE1A 353 + 0 194 140289 111 1 0 83 chain 99731 chrY 59373566 + 16112278 16113471 SVA_B 1603 - 7 1583 36848 365 3 0 165 0 281 80 0 116 514 40 13 8 0 16 18 chain 22430 chrY 59373566 + 16117690 16117982 AluY 311 + 19 304 118336 107 1 0 110 0 1 40 12 5 22 chain 4973 chrY 59373566 + 16124102 16124212 THE1C 375 - 266 375 195440 18 14 0 8 1 15 19 9 8 41 chain 542526 chrY 59373566 + 16124411 16130415 L1PA2 6032 + 2 6032 2418 69 0 1 113 0 1 20 0 1 45 5 4 1147 0 1 1165 1 0 569 0 4 1371 1 0 671 1 0 725 0 22 101 chain 542976 chrY 59373566 + 16136073 16142078 L1PA2 6032 - 0 6030 2346 101 0 22 725 1 0 677 1 0 1365 0 4 576 1 0 1158 0 1 1147 5 4 45 0 1 134 0 1 69 chain 99984 chrY 59373566 + 16153005 16154211 SVA_B 1603 + 7 1596 36784 31 0 16 8 40 13 478 0 397 281 3 0 365 chain 15371 chrY 59373566 + 16162807 16163002 THE1A 353 - 159 353 140290 83 1 0 111 chain 11605 chrY 59373566 + 16163272 16163508 Tigger1 2417 - 2167 2410 153872 141 79 86 16 chain 11769 chrY 59373566 + 16178933 16179258 MER83B 357 - 40 303 153178 145 164 102 16 chain 2634 chrY 59373566 + 16185949 16185983 L1MA8 2339 - 74 107 231210 9 1 0 24 chain 452772 chrY 59373566 + 16206159 16211357 L1PA3long 6157 - 0 5199 8664 1488 1 0 1486 1 0 4 3 4 697 1 3 1517 chain 234047 chrY 59373566 + 16214086 16216993 L1P1 4361 + 1 2969 17085 39 1 8 178 0 58 290 10 9 118 7 0 495 55 55 177 1 0 365 0 2 218 5 8 5 3 0 903 1 4 36 chain 4515 chrY 59373566 + 16219657 16219710 LTR46 455 + 0 53 200613 53 chain 81473 chrY 59373566 + 16245055 16246079 LTR5A 1029 + 0 1029 42981 146 7 6 270 0 4 122 17 17 271 1 4 122 1 0 67 chain 144673 chrY 59373566 + 16265824 16267522 L1PA5 6144 + 4428 6144 25374 200 1 0 1140 0 1 30 0 17 155 1 2 171 chain 21230 chrY 59373566 + 16282110 16282422 AluY 311 + 2 306 123102 43 19 12 46 10 7 21 0 2 173 chain 29438 chrY 59373566 + 16292565 16292875 AluYa5 310 - 0 310 86901 310 chain 28364 chrY 59373566 + 16308963 16309270 AluYb8 318 + 0 307 91717 209 1 0 76 0 1 21 chain 471003 chrY 59373566 + 16318081 16324241 L1PA6 6164 + 4 6147 8001 150 5 0 7 0 5 857 1 0 48 9 12 172 7 8 169 3 4 16 1 0 55 1 0 688 6 12 127 22 0 480 5 12 259 1 0 89 12 11 4 0 1 114 1 0 387 40 18 23 9 10 197 0 1 4 1 0 112 2 3 209 1 0 4 0 1 79 22 22 138 0 1 105 0 1 30 6 4 97 7 11 313 0 1 501 0 1 34 0 6 530 chain 27978 chrY 59373566 + 16336005 16336319 L1PA3long 6157 - 466 780 93081 314 chain 39863 chrY 59373566 + 16336319 16336772 L1PA3long 6157 + 5703 6156 69515 453 chain 10381 chrY 59373566 + 16338013 16338293 THE1B 368 - 62 355 158784 49 21 29 14 47 45 27 31 37 14 13 14 64 chain 229902 chrY 59373566 + 16379152 16381858 L1PA4 6152 - 6 2705 17311 333 0 1 1943 0 1 178 1 2 119 15 5 117 chain 504753 chrY 59373566 + 16394149 16400167 L1PA4 6152 + 104 6143 6557 1052 0 3 281 0 2 498 0 2 1314 0 3 153 0 1 519 0 1 325 1 0 25 4 0 15 0 13 1253 0 1 578 chain 73569 chrY 59373566 + 16410283 16411173 L1PA7 6471 + 5350 6241 46750 132 0 1 80 0 1 85 4 1 481 0 1 20 0 1 88 chain 16602 chrY 59373566 + 16421590 16421889 LTR12C 1709 + 928 1192 136663 180 86 51 33 chain 3210 chrY 59373566 + 16421770 16421856 LTR12C 1709 + 670 715 168441 15 47 6 24 chain 3210 chrY 59373566 + 16421889 16421975 LTR12C 1709 + 748 877 168441 19 52 95 15 chain 161239 chrY 59373566 + 16422613 16424743 HERV9-int 5642 + 0 2043 23159 168 1 0 270 13 16 341 1 0 117 12 8 132 80 0 55 4 0 936 chain 98913 chrY 59373566 + 16426272 16427723 LTR12C 1709 + 84 1709 37047 106 105 106 42 0 43 33 10 9 43 2 0 184 0 119 62 10 9 231 0 47 89 24 0 17 11 4 399 6 5 77 chain 3662 chrY 59373566 + 16459942 16459988 MER4D1 891 + 837 883 212543 46 chain 73218 chrY 59373566 + 16468537 16469640 HERVH-int 3825 - 265 1730 46917 58 7 0 59 100 469 460 1 0 73 12 0 7 20 32 58 8 9 240 chain 12957 chrY 59373566 + 16480082 16480224 L1PA4 6152 + 6004 6146 148402 142 chain 10374 chrY 59373566 + 16480311 16480426 L1PA4 6152 - 6 121 158811 115 chain 85265 chrY 59373566 + 16487844 16489353 HERVK11-int 2540 - 302 1723 41435 127 4 7 80 1 0 189 1 0 103 27 22 421 21 1 33 11 0 29 22 11 28 3 0 8 3 2 47 1 0 11 0 1 53 2 0 21 144 120 13 83 71 23 chain 169409 chrY 59373566 + 16498063 16499998 L1PA3long 6157 - 275 2211 22133 249 0 1 1686 chain 323077 chrY 59373566 + 16500000 16503926 L1P1 4361 - 429 4359 12477 218 0 1 150 9 7 300 0 2 502 0 2 4 0 1 177 0 5 164 0 1 1427 1 2 260 19 12 127 2 1 534 0 1 32 chain 3854 chrY 59373566 + 16514847 16514893 MADE1 96 - 50 96 209569 46 chain 3750 chrY 59373566 + 16537731 16537905 MLT1D 503 - 48 225 211138 32 112 115 30 chain 129258 chrY 59373566 + 16539787 16541341 LTR12C 1709 + 0 1709 28253 309 0 1 4 1 0 385 0 159 253 1 0 5 3 1 107 0 4 191 4 1 138 3 1 150 chain 2665 chrY 59373566 + 16550775 16550841 MLT2A1 477 - 10 110 230832 23 25 59 18 chain 4766 chrY 59373566 + 16564880 16564937 Charlie1b 519 + 143 200 197749 57 chain 204333 chrY 59373566 + 16572649 16575395 L1PA7 6471 + 3737 6467 18902 91 24 0 11 1 0 155 28 19 25 10 11 136 1 2 532 0 3 81 2 0 5 2 4 186 0 2 204 1 0 6 1 2 390 0 4 99 1 0 430 7 17 242 36 0 9 0 36 20 2 0 8 chain 19690 chrY 59373566 + 16614488 16614835 THE1B 368 + 0 366 128131 64 18 19 22 2 5 59 1 0 10 49 65 122 chain 9326 chrY 59373566 + 16618091 16618275 LTR12C 1709 + 703 877 163917 44 50 0 63 4 44 23 chain 392347 chrY 59373566 + 16618701 16623586 HERV9-int 5642 + 0 4809 10384 294 0 3 186 0 1 52 0 1 259 2 1 116 4 0 194 83 0 3 1 0 69 0 1 400 0 2 5 11 9 411 0 2 396 2 3 1509 5 6 788 0 2 11 19 20 65 chain 3629 chrY 59373566 + 16619845 16619887 HERV9-int 5642 + 1064 1106 213184 42 chain 100478 chrY 59373566 + 16624512 16625803 LTR12C 1709 + 0 1709 36636 106 0 1 401 6 7 135 0 278 184 17 8 83 0 5 16 0 4 226 0 8 20 13 143 84 chain 14386 chrY 59373566 + 16640248 16640569 THE1C 375 - 50 375 143251 76 5 6 20 7 10 13 25 20 26 16 0 9 23 43 47 9 10 45 chain 212921 chrY 59373566 + 16651903 16655019 L1PA7 6471 + 530 6465 18300 27 0 1 37 172 139 60 1 2 166 0 29 6 29 0 216 0 4 35 14 33 68 3 4 964 7 8 237 0 2 68 2 0 59 12 18 238 12 2 186 0 2832 160 0 1 177 1 0 13 9 15 16 12 4 100 1 0 8 chain 196135 chrY 59373566 + 16656659 16658936 L1PA2 6032 - 0 2283 19489 892 0 1 152 0 1 4 2 1 23 1 5 736 0 2 91 4 3 372 chain 505247 chrY 59373566 + 16682476 16688604 L1PA4 6152 - 0 6152 6510 285 5 3 380 0 1 374 0 1 4 2 1 766 0 2 89 1 0 305 1 2 159 1 2 1183 6 7 81 0 2 133 0 1 267 0 3 186 1 2 202 0 1 450 0 1 214 6 5 664 5 4 205 11 25 142 chain 22369 chrY 59373566 + 16689474 16689750 L1PA7 6471 - 466 742 118631 276 chain 136590 chrY 59373566 + 16700563 16702229 LTR12C 1709 - 0 1709 26718 479 1 6 107 2 0 6 1 0 239 0 40 77 0 2 439 1 0 4 0 1 201 5 4 104 chain 311410 chrY 59373566 + 16704756 16708741 HERV9-int 5642 - 0 5641 12951 17 9 3 19 28 5 14 1 0 59 33 30 35 9 7 39 0 9 175 1 0 453 20 1734 19 1 0 820 9 5 955 1 0 134 1 0 4 3 0 196 4 0 119 6 5 70 0 6 257 12 14 101 1 3 318 26 0 16 chain 136337 chrY 59373566 + 16708815 16710643 LTR12C 1709 - 0 1709 26776 294 4 1 186 0 4 107 2 0 6 1 0 109 41 0 165 77 0 80 0 2 240 2 3 404 8 7 86 2 1 14 chain 1759 chrY 59373566 + 16709730 16709755 LTR12C 1709 - 1031 1056 126127 25 chain 4207 chrY 59373566 + 16709755 16709807 LTR12C 1709 - 937 991 147223 33 0 2 19 chain 3571 chrY 59373566 + 16710720 16710759 MLT2A2 560 - 2 41 214124 39 chain 303794 chrY 59373566 + 16725328 16729276 L1PA6 6164 - 7 3921 13254 380 0 1 236 5 6 72 0 1 76 8 9 61 1 2 17 2 0 235 1 2 28 0 1 182 0 1 51 0 1 149 5 0 299 3 23 229 0 1 17 0 1 51 4 3 16 34 0 51 0 1 58 6 7 27 6 11 154 2 0 232 6 8 267 0 1 82 0 4 775 35 0 85 chain 31054 chrY 59373566 + 16737975 16738733 LTR12C 1709 - 0 799 82431 84 14 13 71 1 0 46 1 0 33 122 0 46 6 3 22 6 8 5 2 0 33 60 63 43 0 42 11 47 5 21 3 128 22 13 54 46 chain 10191 chrY 59373566 + 16748964 16749109 L1PA7 6471 + 6322 6465 159671 124 0 1 5 1 0 7 2 0 6 chain 32421 chrY 59373566 + 16749919 16750322 L1PA7 6471 - 14 417 80164 403 chain 147990 chrY 59373566 + 16784438 16786074 L1PA2 6032 + 4396 6028 24880 291 0 2 1096 6 0 243 chain 250171 chrY 59373566 + 16814044 16816937 L1PA4 6152 - 1 2898 16239 338 0 1 503 5 1 6 0 4 36 0 1 320 0 1 311 2 0 277 0 4 666 1 0 428 chain 88044 chrY 59373566 + 16826456 16827662 L1PA7 6471 + 5252 6459 40355 75 0 6 288 6 9 144 2 1 179 21 2 45 7 9 78 1 2 50 1 9 109 1 2 199 chain 26121 chrY 59373566 + 16847483 16847825 THE1C-int 1605 + 15 415 99524 59 2 0 37 0 60 157 0 1 4 1 0 82 chain 230879 chrY 59373566 + 16883729 16887042 L1PA7 6471 + 3250 6466 17260 36 7 0 236 3 4 84 3 4 398 6 0 42 6 5 110 0 1 45 0 1 34 1 0 389 1 0 310 4 0 47 1 6 13 1 0 4 5 6 306 161 74 207 3 0 8 2 1 9 0 1 368 0 1 49 0 1 40 0 1 47 0 1 43 4 5 29 0 1 8 4 3 80 8 9 37 0 1 42 7 4 65 chain 23834 chrY 59373566 + 16897365 16897666 AluY 311 + 2 305 111285 46 10 11 71 1 2 173 chain 9734 chrY 59373566 + 16913109 16913234 THE1C 375 - 36 161 161917 125 chain 4394 chrY 59373566 + 16925536 16925586 THE1C 375 - 325 375 202015 50 chain 67918 chrY 59373566 + 16944540 16945463 MER11C 1089 - 151 1089 49276 22 1 0 50 0 1 127 0 1 38 1 0 7 0 4 15 1 0 90 52 51 146 1 0 65 0 4 61 0 9 30 1 2 215 chain 24543 chrY 59373566 + 16945465 16945753 L1P1 4361 - 4072 4360 107293 288 chain 501263 chrY 59373566 + 16973016 16978939 L1PA3long 6157 + 6 5982 6769 22 0 20 81 1 15 151 0 1 20 4 5 642 3 0 14 1 0 245 0 1 312 0 1 1161 1 0 12 0 5 387 0 2 62 0 1 4 2 1 507 0 15 669 0 1 412 2 0 143 4 5 286 0 1 100 1 0 86 2 0 586 chain 461923 chrY 59373566 + 16994112 17000000 L1PA4 6152 - 9 5595 8334 822 0 1 74 0 1 174 2 1 40 0 1 18 0 1 234 1 0 288 0 1 4 1 0 128 1 2 413 0 2 249 2 0 70 318 0 331 5 8 186 0 1 265 0 1 521 0 1 244 0 1 45 4 5 39 7 8 468 0 1 441 0 1 18 0 1 339 5 6 106 0 1 5 1 0 19 chain 28935 chrY 59373566 + 16996641 16996950 AluYa5 310 - 1 310 89289 309 chain 43354 chrY 59373566 + 17000000 17000554 L1P1 4361 - 3810 4360 64984 21 4 0 529 chain 91675 chrY 59373566 + 17001781 17003059 L1P3 4156 - 17 1326 39064 24 2 1 7 2 0 183 1 2 82 5 22 42 0 1 39 3 1 126 0 1 55 6 10 269 0 11 4 9 0 324 4 13 4 0 1 87 chain 399412 chrY 59373566 + 17023262 17027865 L1PA2 6032 - 0 4616 10121 175 0 2 832 0 1 2078 0 8 56 1 0 689 0 1 110 0 2 662 chain 3320 chrY 59373566 + 17034483 17034521 MLT1G 592 + 249 287 218572 38 chain 181694 chrY 59373566 + 17034879 17036920 L1HS 6032 + 1676 3723 20823 402 0 2 383 0 1 804 0 3 452 chain 41650 chrY 59373566 + 17038354 17038917 LTR19B 566 + 0 563 67090 466 13 12 35 10 11 39 chain 16367 chrY 59373566 + 17038926 17039126 L1PA4 6152 - 9 209 137291 200 chain 5237 chrY 59373566 + 17055780 17055845 THE1B 368 + 20 90 192652 17 0 5 48 chain 17125 chrY 59373566 + 17055856 17056069 HERV9-int 5642 - 5055 5268 135246 213 chain 4730 chrY 59373566 + 17056681 17056731 L1PA3long 6157 + 5898 5948 198171 50 chain 17146 chrY 59373566 + 17056732 17056926 L1PA3long 6157 + 5948 6142 135183 194 chain 207990 chrY 59373566 + 17058615 17061022 L1PA3long 6157 - 8 2414 18640 257 2 1 72 0 1 874 0 1 532 3 1 667 chain 248932 chrY 59373566 + 17061043 17063984 L1PA3long 6157 + 741 3758 16316 91 8 8 349 2 5 1026 0 66 295 0 3 580 0 1 231 0 3 359 chain 520136 chrY 59373566 + 17064643 17070867 L1PA3long 6157 + 6 6157 5140 692 7 0 12 0 7 1106 0 1 4 3 2 496 1 0 44 0 4 206 0 3 109 1 0 496 0 1 78 6 5 25 0 1 552 0 1 93 1 2 691 1 2 258 0 1 899 83 0 360 chain 11385 chrY 59373566 + 17070902 17071031 L1PA3long 6157 + 6028 6157 154759 129 chain 28663 chrY 59373566 + 17074642 17074942 AluYa5 310 - 0 300 90477 300 chain 7510 chrY 59373566 + 17078690 17078810 L1PA8 5853 + 5725 5853 174096 19 2 1 15 1 0 37 7 17 39 chain 222911 chrY 59373566 + 17083037 17085696 L1PA4 6152 - 9 2652 17714 317 0 1 626 0 1 258 0 1 40 5 1 145 0 3 120 0 1 438 0 1 225 22 0 282 1 2 21 0 1 159 chain 87977 chrY 59373566 + 17100183 17101431 HERV9-int 5642 + 4430 5640 40384 192 6 1 59 8 9 295 0 1 243 1 0 227 6 4 36 3 1 27 1 0 60 1 0 13 28 5 20 8 3 14 chain 250568 chrY 59373566 + 17122246 17125320 L1PA5 6144 - 5 3099 16207 149 0 1 225 0 1 128 0 1 57 1 2 288 1 0 622 8 7 17 0 7 858 0 1 101 0 1 172 0 1 285 5 13 56 0 1 71 2 1 28 chain 192521 chrY 59373566 + 17125325 17127607 L1PA5 6144 + 765 3048 19814 834 0 1 287 1 0 653 0 1 507 chain 29663 chrY 59373566 + 17143897 17144207 AluYa5 310 - 0 310 85989 310 chain 170744 chrY 59373566 + 17153335 17155394 L1PA4 6152 - 0 2079 21963 10 0 6 168 3 4 64 0 1 7 1 0 598 0 2 137 2 0 942 11 12 90 0 12 26 chain 67842 chrY 59373566 + 17155403 17157573 L1PA4 6152 + 3448 6138 49311 568 0 1 31 1314 1832 194 0 1 63 chain 12740 chrY 59373566 + 17157597 17157864 THE1B 368 + 84 348 149290 7 14 0 78 1 0 5 59 66 77 1 2 13 0 4 12 chain 487937 chrY 59373566 + 17159608 17165622 L1PA5 6144 - 6 6141 7448 280 0 6 178 0 2 5 0 3 38 0 1 4 5 20 300 0 4 522 0 1 115 0 1 313 0 4 658 0 1 12 3 0 169 0 1 351 0 6 1182 22 15 28 0 1 64 0 1 695 0 3 100 8 9 4 1 0 8 1 0 108 0 4 63 17 103 62 7 0 124 10 9 557 chain 13364 chrY 59373566 + 17191616 17191780 AluY 311 + 36 200 146835 82 1 0 14 0 1 67 chain 65501 chrY 59373566 + 17199546 17200263 L1PA2 6032 - 4 726 50339 150 0 5 567 chain 28750 chrY 59373566 + 17203325 17203630 AluYa8 305 - 0 305 90123 305 chain 231112 chrY 59373566 + 17218048 17220914 L1PA4 6152 - 6 2917 17249 139 10 11 96 0 2 6 25 8 193 0 1 252 2 54 89 0 1 175 0 1 884 0 1 65 2 3 474 0 1 403 6 7 45 chain 178946 chrY 59373566 + 17225707 17227787 L1P1 4361 + 705 2787 21077 323 1 0 403 2 0 575 0 1 373 0 4 403 chain 274506 chrY 59373566 + 17227795 17231609 L1PA6 6164 + 2038 6092 14952 109 0 1 74 18 19 62 2 0 29 0 2 132 2 0 260 2 1 27 12 118 85 0 1 4 9 8 160 0 3 5 4 1 44 6 8 16 0 3 30 6 10 59 0 3 28 0 82 60 0 36 593 1 3 213 2 1 313 8 2 21 4 6 8 0 1 71 0 1 48 0 1 200 11 12 375 10 12 94 8 7 37 3 4 38 0 1 250 1 2 104 4 6 4 1 0 69 1 0 77 chain 7541 chrY 59373566 + 17232640 17232727 L1PA4 6152 - 6 93 173925 87 chain 37579 chrY 59373566 + 17245582 17246030 L1PA4 6152 - 0 448 72714 448 chain 257168 chrY 59373566 + 17257759 17260765 L1PA3long 6157 - 2415 5427 15867 258 0 1 44 1 2 1020 0 1 1223 1 4 94 3 0 5 5 8 352 chain 17728 chrY 59373566 + 17260765 17260975 L1PA3long 6157 + 3733 3944 133368 202 0 1 8 chain 7667 chrY 59373566 + 17260975 17261079 L1PA3long 6157 + 3945 4050 173132 25 1 2 78 chain 125940 chrY 59373566 + 17261079 17262539 L1PA3long 6157 + 4052 5513 29121 1030 1 2 294 1 0 102 0 1 32 chain 54878 chrY 59373566 + 17262539 17263172 L1PA3long 6157 + 5514 6147 55784 633 chain 518936 chrY 59373566 + 17264889 17270928 L1PA3long 6157 - 15 6153 5274 111 0 1 819 0 1 411 0 2 5 0 1 21 0 89 581 4 6 720 1 0 1292 0 1 1662 0 3 412 chain 52116 chrY 59373566 + 17276303 17276896 L1PA3long 6157 + 5562 6157 57550 530 0 2 63 chain 5396 chrY 59373566 + 17300464 17300531 L1PA2 6032 + 5968 6032 191022 53 3 0 11 chain 12765 chrY 59373566 + 17313574 17313764 L1PB4 2604 - 116 303 149191 81 11 10 11 2 0 85 chain 3124 chrY 59373566 + 17316007 17316042 THE1C 375 - 340 375 222487 35 chain 92685 chrY 59373566 + 17337564 17338662 L1PA4 6152 + 5038 6140 38757 445 0 1 278 1 2 232 0 1 41 0 1 101 chain 393035 chrY 59373566 + 17367497 17381949 HERVE_a-int 7009 + 135 7007 10356 21 3 0 19 13 11 68 16 12 24 1 0 4 2 1 6 1 0 8 1 0 14 47 37 18 28 0 35 4 2 24 1 0 45 1 0 21 1 0 53 0 2 37 1 0 77 0 107 35 3 1 26 1 0 27 0 1 6 0 1 4 2 1 27 1 0 26 1 0 8 1 0 73 2 1 29 4 3 40 3 1 13 1 0 52 1 0 20 27 24 10 9 5 21 2 0 16 1 0 21 2 1 5 1 0 7 1 0 10 7 5 5 1 0 56 3 1 57 1 0 23 1 0 6 0 13 112 1 0 19 1 0 19 3 2 10 1 0 18 1 0 12 12 10 54 1 0 37 2 1 62 1 0 31 0 1 4 1 0 8 2 1 33 1 0 44 2 1 22 6 5 12 2 1 23 2 1 11 1 0 94 3 2 25 6 4 28 37 30 8 1 0 143 10 9 6 1 0 38 1 0 106 0 1 36 0 2 23 1 0 93 1 2 75 25 14 24 0 1 197 3 2 84 1 0 95 1 2 147 0 1 4 4 5 244 2 1 72 5 4 853 8390 0 822 9 0 114 1 0 13 3 872 79 1 0 44 1 0 16 14 14 11 1 0 15 1 0 5 2 0 7 1 0 39 1 0 19 5 4 43 1 0 3 1 0 27 8 6 55 2 1 8 4 0 27 3 0 53 2 0 28 2 0 30 11 8 13 1 0 25 2 0 33 9 7 10 34 26 22 3 1 5 1 0 11 chain 16193 chrY 59373566 + 17372463 17373085 LTR12C 1709 + 928 1534 137773 148 0 47 48 396 333 30 chain 375000 chrY 59373566 + 17373228 17377981 HERV9-int 5642 + 0 4811 10920 93 2 3 64 10 51 253 19 20 59 0 1 180 0 1 70 1 0 71 1 86 24 89 0 131 4 0 50 0 4 115 0 2 417 1 0 335 0 1 63 0 3 255 0 7 110 4 5 362 0 2 104 0 1 753 0 3 93 0 1 371 1 0 643 1 0 4 chain 9689 chrY 59373566 + 17379680 17379881 LTR12C 1709 + 703 831 162155 119 73 0 9 chain 467838 chrY 59373566 + 17428151 17434340 L1PA6 6164 - 2 6164 8117 150 34 0 6 0 34 70 37 0 68 0 1 513 0 1 12 0 13 153 0 1 294 16 5 192 1 0 105 0 1 94 0 1 5 2 1 274 6 10 278 1 0 4 0 2 18 7 8 620 6 7 30 24 18 80 6 7 99 0 1 4 1 0 55 0 1 592 14 0 176 7 18 844 2 6 332 5 6 26 1 0 453 5 4 55 1 0 5 0 1 69 23 24 21 0 1 293 chain 348285 chrY 59373566 + 17449128 17453827 L1PA7 6471 - 35 4745 11657 70 3 4 51 13 14 129 1 2 11 9 0 24 1 0 80 0 1 377 0 1 51 11 9 132 0 1 4 1 0 118 15 16 141 0 1 132 0 3 6 9 6 101 2 0 131 13 15 223 16 19 288 1 0 5 0 1 433 0 1 228 0 1 107 1 0 221 1 0 102 0 1 238 0 5 39 0 4 40 6 7 142 5 7 177 1 2 249 1 0 107 0 2 308 0 1 83 8 5 33 chain 55796 chrY 59373566 + 17453850 17454472 L1PA3long 6157 - 3 626 55249 151 0 1 471 chain 29025 chrY 59373566 + 17474932 17475243 AluYa5 310 - 1 310 88882 183 2 0 126 chain 390662 chrY 59373566 + 17481058 17486437 L1PA6 6164 + 455 6160 10431 108 6 8 216 0 17 53 0 1 162 14 15 51 0 3 195 0 1 122 0 2 102 7 5 109 0 1 101 1 0 60 14 15 48 0 1 122 0 1 4 1 0 38 5 6 72 0 1 67 0 1 49 0 2 110 2 1 199 16 24 356 0 1 113 30 181 101 1 0 243 1 0 70 0 60 177 9 8 108 54 5 41 0 3 4 0 1 152 1 0 146 0 61 276 0 1 42 1 0 4 0 1 84 0 2 15 0 2 6 2 0 67 0 1 145 0 13 13 0 1 6 1 4 75 0 1 225 15 19 420 0 37 121 12 46 8 34 0 146 chain 5607 chrY 59373566 + 17498479 17498603 LTR12_ 688 - 236 331 189013 15 47 18 62 chain 374005 chrY 59373566 + 17500339 17505113 HERV9-int 5642 - 817 5614 10963 1034 33 34 714 0 1 288 0 16 268 0 2 88 0 1 690 2 1 4 0 1 286 0 2 182 0 1 102 1 0 4 2 0 45 1 2 155 6 4 76 0 1 4 1 0 15 10 9 76 5 9 682 chain 92705 chrY 59373566 + 17512819 17514143 HERVK14-int 1672 + 5 1334 38744 25 1 0 7 4 6 46 1 0 181 1 0 35 1 0 34 2 0 153 0 1 55 16 21 46 2 1 28 4 5 19 9 10 118 1 2 21 1 0 164 0 2 73 8 6 7 2 0 21 14 13 203 0 5 21 chain 488996 chrY 59373566 + 17518419 17524148 L1PA3long 6157 + 419 6157 7411 186 0 2 217 4 5 70 1 2 289 8 11 47 0 1 772 0 1 202 0 1 101 2 0 492 0 1 357 0 1 192 2 0 145 2 1 731 0 1 1651 1 0 103 2 0 8 0 1 128 4 7 12 chain 34893 chrY 59373566 + 17534859 17535324 LTR15 485 + 13 475 76351 62 1 0 86 14 15 274 3 0 25 chain 510382 chrY 59373566 + 17537945 17543948 L1PA3long 6157 + 10 6156 6132 100 0 1 37 1 0 4 1 4 122 1 0 35 1 0 4 0 1 395 1 2 22 1 2 42 7 135 79 0 3 47 0 1 535 0 3 437 0 1 675 13 12 147 0 1 319 0 1 1069 0 1 456 1 2 814 0 1 480 1 0 156 chain 21196 chrY 59373566 + 17546185 17546421 LTR12C 1709 + 1473 1709 123227 236 chain 35540 chrY 59373566 + 17549062 17549706 LTR15 485 + 0 477 75490 150 0 2 165 0 2 45 0 1 23 34 11 22 154 5 51 chain 6682 chrY 59373566 + 17551333 17551405 L1PA5 6144 - 367 439 179817 72 chain 28050 chrY 59373566 + 17551431 17551756 L1PA5 6144 + 5802 6128 92828 191 1 2 133 chain 4250 chrY 59373566 + 17559569 17559624 Tigger1 2417 + 29 88 203877 19 0 4 36 chain 43096 chrY 59373566 + 17566921 17567472 LTR22 571 + 0 554 65293 4 1 0 78 1 0 75 0 1 33 0 1 185 5 7 52 0 1 117 chain 27245 chrY 59373566 + 17605337 17605848 L1PB1 5432 - 5 480 95444 5 2 0 18 1 0 13 1 0 20 2 1 24 2 0 15 7 4 30 16 3 13 1 0 39 7 6 11 6 5 53 2 0 8 11 7 6 1 0 10 1 0 19 3 0 10 8 9 146 chain 306672 chrY 59373566 + 17616636 17620792 L1PA7 6471 + 2292 6456 13144 242 9 20 87 29 1 234 0 3 142 9 10 20 3 0 256 4 23 62 1 2 146 6 10 62 8 9 115 1 0 4 5 1 260 3 0 7 0 1 24 0 4 60 1 2 159 5 6 304 4 5 966 0 2 63 8 7 10 1 0 103 0 1 285 6 5 79 0 1 22 5 7 234 4 0 98 chain 32572 chrY 59373566 + 17621962 17622399 LTR7 482 - 8 482 79896 41 10 14 110 0 2 12 0 31 148 2 1 5 0 1 109 chain 277722 chrY 59373566 + 17624600 17628294 HERVH-int 3825 + 0 3824 14763 327 7 6 197 1 0 11 1 0 4 0 1 24 1 0 10 1 0 9 4 0 14 7 1 11 4 3 13 3 0 7 16 14 4 1 0 42 2 1 18 66 1 5 0 1 5 1 0 50 0 1 4 2 0 442 15 0 204 9 0 22 4 6 12 1 0 92 3 1 5 0 2 113 6 33 290 0 4 76 7 8 207 0 1 120 11 5 597 1 0 46 9 11 39 0 210 268 0 2 72 1 2 150 chain 19368 chrY 59373566 + 17629552 17629953 LTR7 482 + 0 482 129029 20 58 147 13 51 0 44 8 40 51 1 12 155 chain 7816 chrY 59373566 + 17632067 17632162 MLT2B2 565 + 21 116 172210 95 chain 143596 chrY 59373566 + 17634475 17636198 L1PA4 6152 - 9 1739 25544 163 1 2 43 0 1 42 1 0 73 0 1 364 0 1 133 0 1 348 0 1 298 7 8 34 0 1 216 chain 55031 chrY 59373566 + 17636198 17636863 L1PA4 6152 + 3707 4379 55583 182 4 5 46 0 1 261 0 1 145 0 4 27 chain 460825 chrY 59373566 + 17638141 17644271 L1PA6 6164 - 5 6164 8369 160 0 1 5 1 0 366 0 1 313 1 0 18 0 5 251 14 13 34 0 1 348 1 0 275 4 0 6 17 22 194 1 0 148 0 1 57 9 10 26 0 1 110 0 1 84 0 2 176 1 0 90 1 0 4 4 9 96 9 4 136 3 4 72 1 2 20 0 1 118 5 6 223 17 13 89 0 1 317 17 0 64 0 2 5 5 3 292 0 1 4 1 0 61 0 1 100 0 2 207 2 1 119 0 9 36 0 4 255 2 24 116 2 1 249 26 27 224 19 18 127 0 1 372 chain 40060 chrY 59373566 + 17649360 17649928 LTR30 714 - 90 675 69233 145 18 19 206 6 11 101 22 33 70 chain 26856 chrY 59373566 + 17664670 17664971 AluYa5 310 - 18 310 96787 8 9 0 284 chain 113037 chrY 59373566 + 17682437 17683775 L1PA4 6152 - 920 2248 33366 137 0 1 460 1 0 11 11 1 718 chain 75865 chrY 59373566 + 17683775 17684683 L1PA4 6152 + 5227 6143 45410 127 3 1 59 0 2 63 2 1 521 0 1 47 0 8 86 chain 510203 chrY 59373566 + 17696889 17702840 L1PA3long 6157 - 0 6151 6145 427 0 2 344 0 1 382 0 1 54 0 12 1750 0 1 6 1 0 67 5 6 399 0 5 151 0 1 431 1 4 242 0 1 157 0 13 245 0 1 379 0 5 166 0 128 61 1 2 139 2 1 361 1 27 179 chain 2925 chrY 59373566 + 17712224 17712258 ORSL 269 + 69 103 226585 34 chain 22192 chrY 59373566 + 17715273 17715613 THE1C 375 - 12 361 119388 13 1 0 12 6 12 28 1 4 109 1 0 65 0 1 4 7 6 39 5 7 49 chain 20968 chrY 59373566 + 17720880 17721136 L1PA4 6152 - 0 262 124039 10 0 6 246 chain 496847 chrY 59373566 + 17722783 17728913 L1PA4 6152 + 0 6143 7017 125 6 18 12 44 45 275 0 4 228 2 3 344 0 1 231 2 0 148 0 2 45 0 1 328 0 1 198 10 9 405 2 0 4 3 0 94 0 3 880 24 15 170 16 17 76 4 0 785 1 0 409 0 4 661 0 1 314 0 1 229 25 27 30 chain 90818 chrY 59373566 + 17732449 17733559 L1PA5 6144 + 5013 6136 39347 90 0 15 265 1 0 88 0 1 53 19 17 594 chain 145300 chrY 59373566 + 17733638 17735682 L1PA8 5853 + 3785 5841 25280 12 2 0 5 5 7 56 0 5 100 0 1 84 0 6 138 17 11 5 0 3 58 0 1 295 2 0 127 0 9 124 1 2 65 21 22 83 4 3 8 1 0 8 9 10 449 0 2 5 2 0 75 1 0 44 2 0 65 7 6 64 1 0 17 6 5 76 chain 63224 chrY 59373566 + 17757003 17757706 L1PA3long 6157 - 410 1113 51352 703 chain 11769 chrY 59373566 + 17757706 17757835 L1PA3long 6157 + 4906 5035 152406 129 chain 16083 chrY 59373566 + 17763058 17763250 L1PA5 6144 - 24 216 138103 192 chain 6689 chrY 59373566 + 17779395 17779477 LTR12_ 688 + 458 540 179769 82 chain 21037 chrY 59373566 + 17779595 17779864 L1PA7 6471 - 4447 4717 123777 50 0 1 219 chain 61256 chrY 59373566 + 17782714 17783595 L1PA7 6471 - 10 877 52227 135 39 29 97 9 6 174 0 1 165 7 1 207 9 10 15 1 3 14 0 1 9 chain 141473 chrY 59373566 + 17784282 17785913 L1PA3long 6157 - 8 1645 25905 135 1 2 651 0 3 373 0 1 99 0 1 372 chain 33815 chrY 59373566 + 17804096 17804600 LTR7 482 - 0 482 77915 49 12 14 52 1 2 71 0 31 102 56 0 161 chain 46579 chrY 59373566 + 17812016 17812594 L1P1 4361 - 62 641 61422 151 2 1 280 0 1 28 0 1 117 chain 90955 chrY 59373566 + 17812594 17813696 L1PA5 6144 + 5013 6138 39307 281 1 0 147 10 33 507 9 10 147 chain 72918 chrY 59373566 + 17823926 17824842 L1PA4 6152 - 16 922 47058 97 0 1 33 1 0 4 2 4 232 31 15 92 3 7 421 chain 505714 chrY 59373566 + 17824872 17831022 L1PA4 6152 + 1 6143 6483 155 16 17 261 4 0 126 14 13 682 1 2 157 21 3 181 0 1 426 0 1 538 0 7 602 1 0 29 6 1 1249 0 3 129 0 1 6 0 1 42 0 1 240 0 1 1083 0 1 36 1 2 5 0 1 139 chain 521566 chrY 59373566 + 17834209 17840219 L1PA3long 6157 - 5 6152 5002 137 0 1 1483 0 1 176 0 4 381 0 1 250 0 1 1027 2 0 865 0 1 778 1 0 140 11 139 193 0 2 401 17 18 148 chain 27494 chrY 59373566 + 17843091 17843390 AluYa5 310 - 11 310 94667 299 chain 101032 chrY 59373566 + 17848628 17849809 L1PA4 6152 - 507 1683 36505 1138 9 5 5 1 0 28 chain 4156 chrY 59373566 + 17849809 17849857 L1PA4 6152 + 5637 5685 205147 48 chain 38058 chrY 59373566 + 17849862 17850319 L1PA4 6152 + 5685 6146 72049 317 9 13 131 chain 494800 chrY 59373566 + 17854247 17860348 L1PA5 6144 - 15 6144 7128 153 0 1 163 2 1 337 0 4 81 2 6 81 9 8 106 0 2 212 3 10 7 7 0 217 2 0 385 0 4 155 0 1 692 0 1 483 5 7 40 3 8 484 0 4 102 0 1 351 1 0 4 0 1 59 0 1 530 1 0 534 0 1 517 0 1 243 0 1 130 chain 3417 chrY 59373566 + 17860851 17860924 LTR12F 595 + 112 177 216819 25 20 12 28 chain 4377 chrY 59373566 + 17875291 17875347 MER58A 224 + 152 207 202234 27 1 0 28 chain 490561 chrY 59373566 + 17898084 17903757 L1PA3long 6157 - 15 5687 7339 746 1 0 141 0 1 386 0 1 201 0 1 325 0 1 650 0 2 997 1 0 106 1 4 414 20 0 653 0 1 198 0 9 256 0 2 577 chain 32810 chrY 59373566 + 17911611 17912052 LTR7 482 - 8 482 79516 41 12 14 91 1 0 44 8 39 53 0 1 191 chain 91885 chrY 59373566 + 17953501 17954564 L1PA3long 6157 - 12 1078 38794 1043 1 4 19 chain 131250 chrY 59373566 + 17954564 17956054 L1PA3long 6157 + 3581 5071 27809 666 0 1 787 1 0 36 chain 9391 chrY 59373566 + 17981964 17982076 L1PA7 6471 + 6156 6268 163609 112 chain 3392 chrY 59373566 + 17982114 17982154 L1PA7 6471 - 174 214 217253 40 chain 28575 chrY 59373566 + 17994571 17994887 AluYf4 310 + 0 310 90845 297 6 0 13 chain 231978 chrY 59373566 + 17997326 18000000 L1HS 6032 + 8 2686 17199 67 0 5 176 1 0 162 0 1 330 0 1 568 0 1 783 2 0 467 1 0 117 chain 293933 chrY 59373566 + 18000000 18003342 L1PA2 6032 + 2686 6032 13769 872 0 1 424 0 1 182 0 1 346 1 0 195 0 1 1067 2 1 67 0 1 21 5 0 7 1 0 9 1 8 142 chain 82668 chrY 59373566 + 18006722 18007685 L1PA3long 6157 - 15 977 42475 128 17 16 818 chain 28424 chrY 59373566 + 18008645 18008985 AluYf4 310 - 0 310 91493 13 30 0 297 chain 3068 chrY 59373566 + 18021265 18021307 MER11A 1151 - 1013 1057 223600 28 0 2 14 chain 37691 chrY 59373566 + 18038285 18038829 LTR22 571 + 0 535 72566 82 1 0 70 0 1 283 54 43 43 0 2 11 chain 11415 chrY 59373566 + 18039866 18040204 THE1B 368 - 21 368 154619 25 53 52 27 75 84 23 34 35 101 chain 207794 chrY 59373566 + 18040717 18043090 L1PA3long 6157 + 3776 6157 18655 78 0 5 634 2 1 149 0 3 1193 0 1 317 chain 400671 chrY 59373566 + 18054004 18058979 L1PA5 6144 - 0 6144 10068 13 15 0 77 0 3 50 12 11 343 3 1144 115 0 1 136 0 17 60 0 1 406 0 1 486 0 1 83 1 0 74 1 5 260 1 0 712 9 20 185 2 1 29 5 4 492 1 6 94 3 4 158 1 4 1034 1 0 5 0 1 108 chain 2706 chrY 59373566 + 18074094 18074128 MLT2B4 540 + 362 395 230173 29 1 0 4 chain 126791 chrY 59373566 + 18079144 18080615 L1PA3long 6157 - 0 1472 28860 1443 1 2 27 chain 75420 chrY 59373566 + 18085225 18086128 MER11D 897 - 1 896 45810 113 5 6 75 9 0 31 1 2 330 5 4 334 chain 39690 chrY 59373566 + 18086129 18086589 HERVK11D-int 613 - 0 460 69770 74 0 1 253 1 0 132 chain 77404 chrY 59373566 + 18093672 18094568 MER11D 897 - 0 897 44778 113 0 1 783 chain 112574 chrY 59373566 + 18100684 18102180 L1PA7 6471 + 4696 6184 33508 868 0 7 22 6 8 12 41 22 58 18 21 419 1 0 51 chain 215556 chrY 59373566 + 18119271 18122050 L1PA6 6164 - 4 2945 18132 133 2 0 113 2 0 516 1 0 29 7 11 58 0 4 173 0 1 479 2 1 7 0 1 268 0 4 424 0 1 7 0 1 26 0 1 122 0 151 5 1 0 4 0 1 88 2 1 149 8 3 95 1 8 9 1 0 47 chain 503101 chrY 59373566 + 18130313 18136461 L1PA4 6152 - 0 6152 6664 130 16 9 9 0 8 6 1 0 149 0 1 58 0 1 1334 1 2 381 0 1 373 3 1 592 0 2 231 1 0 476 0 1 66 2 1 462 1 0 300 0 1 162 0 1 148 1 0 505 0 1 525 1 0 5 0 1 209 chain 511730 chrY 59373566 + 18137935 18143942 L1PA3long 6157 + 4 6156 6007 122 0 14 9 45 32 595 0 128 536 1 0 19 19 25 380 1 0 30 0 1 175 0 1 47 0 1 1575 0 2 569 0 3 232 1 5 200 2 1 958 0 1 335 2 0 6 0 2 148 chain 6715 chrY 59373566 + 18144120 18144232 THE1B 368 - 12 116 179573 37 25 17 50 chain 61633 chrY 59373566 + 18153344 18154870 L1P3 4156 - 30 977 52063 13 2 1 5 2 0 177 9 23 14 10 20 46 23 6 145 0 2 80 0 13 53 1 3 31 1 0 5 2 1 54 610 0 12 2 3 23 0 3 88 0 8 118 chain 40193 chrY 59373566 + 18154092 18154627 LTR22 571 - 37 571 69037 268 19 18 248 chain 7586 chrY 59373566 + 18155449 18155536 L1P2 5180 - 1386 1473 173627 87 chain 62646 chrY 59373566 + 18165510 18166317 L1PA6 6164 - 15 817 51610 444 7 1 201 0 1 155 chain 431617 chrY 59373566 + 18183650 18189337 HERV9-int 5642 + 11 5620 9280 68 4 5 380 2 1 17 1 2 101 0 1 210 2 1 139 7 8 148 79 0 14 3 0 145 6 5 1242 0 1 530 0 1 158 0 1 835 0 1 149 1 2 346 1 26 10 0 1 369 5 6 206 1 2 154 0 2 149 16 14 32 25 20 12 1 0 60 1 0 9 32 9 17 chain 7227 chrY 59373566 + 18194678 18194912 LTR19-int 1103 + 86 194 175906 13 107 0 25 17 0 7 1 0 18 1 0 45 chain 18378 chrY 59373566 + 18196017 18196247 L1PA7 6471 - 12 244 131851 133 1 3 96 chain 16419 chrY 59373566 + 18218753 18218936 L1PA3long 6157 + 5959 6142 137155 183 chain 521015 chrY 59373566 + 18226578 18232605 L1PA3long 6157 - 2 6148 5053 257 1 0 297 1 0 217 1 0 200 7 1 1223 1 0 848 1 2 1213 0 1 576 0 1 415 0 128 61 0 7 11 13 6 117 3 1 564 chain 29893 chrY 59373566 + 18282296 18283685 HERV30-int 1034 - 109 897 85119 12 37 8 20 133 18 24 95 43 14 47 0 27 52 0 24 208 88 25 52 0 9 37 32 19 34 0 29 30 15 12 1 2 53 1 0 21 2 1 75 12 0 41 6 1 33 2 0 6 61 31 81 7 1 13 24 0 10 chain 44316 chrY 59373566 + 18284297 18284897 LTR30 714 - 8 692 63809 46 9 8 137 18 103 390 chain 19813 chrY 59373566 + 18287181 18287498 Tigger2a 444 - 96 390 127774 68 20 12 160 26 11 43 chain 24124 chrY 59373566 + 18290655 18290957 L1PA3long 6157 + 5019 5309 109626 164 13 1 125 chain 76596 chrY 59373566 + 18290959 18291808 L1PA3long 6157 + 5309 6157 45165 501 1 0 347 chain 40796 chrY 59373566 + 18292601 18293166 LTR10C 591 + 0 573 68182 47 0 4 84 1 5 352 2 0 6 32 34 41 chain 3511 chrY 59373566 + 18301495 18301532 LTR49 580 + 94 131 215205 37 chain 12307 chrY 59373566 + 18317932 18318091 LTR10D 510 + 348 505 150985 71 2 0 86 chain 35152 chrY 59373566 + 18325292 18325767 LTR15 485 - 0 468 75990 206 0 4 21 0 1 177 0 1 4 21 8 46 chain 521387 chrY 59373566 + 18329746 18335883 L1PA4 6152 - 1 6152 5018 123 0 2 48 1 2 1636 0 1 172 0 2 994 1 0 466 5 0 7 3 7 246 2 0 588 0 15 308 2 1 326 7 8 363 18 1 161 1 2 96 1 0 408 12 26 142 chain 7923 chrY 59373566 + 18336985 18337179 MER47B 469 + 220 464 171506 17 43 93 65 16 0 9 3 19 41 chain 25418 chrY 59373566 + 18369981 18370437 LTR19B 566 - 0 566 102603 30 66 69 14 10 111 15 4 2 156 4 3 4 0 1 33 1 5 11 0 4 108 chain 56815 chrY 59373566 + 18372049 18372872 LTR12 884 - 28 884 54647 56 1 0 47 25 128 249 2 0 88 66 0 264 1 0 24 chain 301613 chrY 59373566 + 18374341 18378288 HERV9-int 5642 - 818 5632 13339 112 0 1 539 0 11 209 7 942 217 2 0 90 0 1 208 6 4 25 0 1 164 7 8 1185 3 0 32 160 0 123 4 89 68 1 0 191 8 7 41 2 3 543 chain 2837 chrY 59373566 + 18378744 18378783 LTR12 884 - 634 698 228128 21 0 25 18 chain 5640 chrY 59373566 + 18385185 18385251 HERV9-int 5642 + 4645 4711 188661 66 chain 31100 chrY 59373566 + 18385252 18385652 HERV9-int 5642 + 4711 5112 82344 359 0 1 41 chain 70630 chrY 59373566 + 18402326 18403122 L1PA3long 6157 - 15 812 48096 141 0 1 655 chain 31286 chrY 59373566 + 18403122 18403474 L1PA3long 6157 + 4973 5325 81864 352 chain 67022 chrY 59373566 + 18408481 18409247 L1PA4 6152 + 5385 6151 49648 198 1 0 517 0 1 50 chain 302298 chrY 59373566 + 18430793 18434741 HERV9-int 5642 + 10 4824 13306 543 2 3 41 8 7 191 1 0 68 4 89 75 160 0 79 3 0 1186 7 8 164 0 1 25 6 4 208 0 1 90 2 0 217 7 942 211 0 11 650 chain 57114 chrY 59373566 + 18436210 18437061 LTR12 884 + 0 884 54460 24 1 0 317 91 1 36 6 28 219 2 105 71 1 0 83 chain 25594 chrY 59373566 + 18438645 18439101 LTR19B 566 + 0 566 101759 111 0 4 8 1 5 33 0 1 4 4 3 156 4 2 15 10 111 14 27 32 12 27 25 30 chain 29430 chrY 59373566 + 18439255 18439561 AluYa5 310 - 4 310 86936 306 chain 3302 chrY 59373566 + 18459961 18459999 MER77 626 - 273 311 218934 38 chain 523815 chrY 59373566 + 18473220 18479357 L1PA4 6152 + 0 6151 4786 128 0 14 438 1 0 92 1 2 161 18 1 363 7 8 326 2 1 308 0 15 596 2 0 238 1 0 480 1 0 994 0 2 172 0 1 1636 1 2 48 0 2 123 chain 35152 chrY 59373566 + 18483335 18483810 LTR15 485 + 17 485 75989 46 21 8 4 0 1 178 0 1 20 0 4 206 chain 12367 chrY 59373566 + 18491009 18491170 LTR10D 510 - 3 162 150768 88 2 0 71 chain 3511 chrY 59373566 + 18507570 18507607 LTR49 580 - 449 486 215206 37 chain 40036 chrY 59373566 + 18515937 18516502 LTR10C 591 - 18 591 69268 41 32 34 6 2 0 352 9 13 76 0 4 47 chain 100255 chrY 59373566 + 18517295 18518452 L1PA3long 6157 - 0 1138 36705 347 1 0 510 3 1 116 16 0 164 chain 19813 chrY 59373566 + 18521609 18521926 Tigger2a 444 + 54 348 127773 43 26 11 160 20 12 68 chain 46130 chrY 59373566 + 18524210 18524810 LTR30 714 + 22 706 61915 390 0 85 155 9 8 46 chain 27969 chrY 59373566 + 18525421 18526428 HERV30-int 1034 + 137 786 93114 10 24 0 13 6 0 82 61 31 6 2 0 33 8 3 39 12 0 75 2 1 21 1 0 53 1 2 12 30 15 29 34 0 19 243 105 22 66 27 24 52 0 27 chain 517423 chrY 59373566 + 18538897 18544969 L1PA3long 6157 + 6 6157 5435 653 0 7 279 0 1 28 0 2 99 0 1 28 0 2 361 0 1 167 0 1 161 0 70 236 0 1 549 14 0 1450 5 7 234 10 14 311 1 2 629 1 0 768 0 1 88 chain 3995 chrY 59373566 + 18566894 18566939 MLT1B 390 - 45 90 207455 45 chain 91748 chrY 59373566 + 18577055 18578264 L1PA7 6471 + 5255 6467 39052 42 0 1 323 1 0 178 6 9 148 0 2 8 1 0 4 4 5 459 0 2 25 4 0 6 chain 59376 chrY 59373566 + 18579035 18579745 L1PA5 6144 - 9 720 53189 137 1 0 8 8 9 180 0 1 376 chain 76093 chrY 59373566 + 18579745 18580609 L1P1 4361 + 2993 3857 45424 172 1 0 517 0 1 174 chain 46797 chrY 59373566 + 18604421 18605562 LTR10C 591 + 0 591 61372 209 552 0 164 0 2 216 chain 53065 chrY 59373566 + 18617789 18618404 L1P1 4361 - 452 1067 56976 615 chain 65706 chrY 59373566 + 18618404 18619153 L1PA3long 6157 + 5408 6157 50244 749 chain 12517 chrY 59373566 + 18621394 18621668 L1PB1 5432 - 5 254 150172 4 1 0 19 1 0 13 2 1 20 8 7 17 2 0 11 12 9 14 20 10 6 3 0 16 1 0 42 1 0 17 2 1 42 chain 355664 chrY 59373566 + 18621841 18626567 L1PA6 6164 - 2 4617 11457 5 2 0 146 19 21 5 2 0 127 0 8 6 0 18 50 7 19 50 0 2 76 0 13 25 0 2 262 0 1 4 1 0 430 1 0 152 5 7 761 1 3 14 0 1 257 0 1 166 0 1 339 0 1 4 0 1 78 1 2 246 1 2 436 1 0 91 6 0 69 169 0 44 0 4 258 1 0 46 1 0 44 1 0 61 0 2 79 2 1 174 chain 21689 chrY 59373566 + 18630402 18630666 MER9a3 513 + 0 266 121433 13 0 1 139 0 1 112 chain 4637 chrY 59373566 + 18679864 18679922 Tigger5 388 - 153 211 199237 58 chain 8075 chrY 59373566 + 18687432 18687520 L1PA3long 6157 + 5919 6007 170618 88 chain 12637 chrY 59373566 + 18687520 18687668 L1PA3long 6157 + 6008 6156 149698 148 chain 57049 chrY 59373566 + 18701465 18702226 L1PA7 6471 - 1363 2127 54500 19 0 3 133 3 0 204 2 1 213 6 10 181 chain 40021 chrY 59373566 + 18707085 18707648 LTR12 884 + 4 634 69287 21 1 0 52 26 1 81 0 4 108 16 105 258 chain 62876 chrY 59373566 + 18710014 18710752 L1PA4 6152 - 11 749 51499 738 chain 5622 chrY 59373566 + 18727617 18727689 LTR66 600 + 338 411 188851 55 0 1 17 chain 89525 chrY 59373566 + 18733560 18734617 L1PA5 6144 - 0 1081 39801 318 6 21 54 0 8 275 0 1 404 chain 84689 chrY 59373566 + 18734617 18735591 L1PA5 6144 + 4102 5076 41500 974 chain 28678 chrY 59373566 + 18735676 18735979 AluYh9 303 - 0 303 90419 303 chain 44433 chrY 59373566 + 18766610 18767173 L1PA7 6471 - 105 669 63655 227 0 1 336 chain 6454 chrY 59373566 + 18771216 18771288 L1PBa1 4058 + 85 157 181610 72 chain 7474 chrY 59373566 + 18789718 18789808 MER9a3 513 - 78 168 174319 90 chain 209096 chrY 59373566 + 18789808 18792623 HERVK9-int 4720 - 752 4684 18561 62 0 1 43 1 2 333 0 2 185 11 13 11 0 2 26 19 0 165 0 10 10 16 6 627 0 1 156 0 1120 70 9 10 13 0 4 845 20 29 60 1 0 21 11 10 7 1 0 64 1 0 6 8 5 13 chain 503366 chrY 59373566 + 18795090 18801260 L1PA5 6144 + 0 6139 6648 124 1 0 578 2 1 340 3 4 204 1 0 46 0 1 74 0 1 60 2 0 104 0 1 32 0 3 343 7 12 11 1 0 374 3 0 83 0 3 101 0 2 1482 0 3 451 1 2 18 35 5 16 6 7 689 0 1 134 1 0 379 0 1 282 12 13 60 23 8 70 1 0 16 chain 140730 chrY 59373566 + 18817695 18819604 L1PA7 6471 + 4572 6468 26033 231 2 0 5 0 2 164 16 7 4 0 1 74 8 0 7 0 8 90 0 1 93 13 3 56 0 8 294 1 0 219 0 1 169 19 15 114 11 12 162 4 5 142 2 0 9 chain 33059 chrY 59373566 + 18837224 18837684 LTR2 463 - 0 463 79118 54 64 65 183 0 2 159 chain 152907 chrY 59373566 + 18843874 18845885 L1PA7 6471 - 2 2017 24241 10 2 1 25 1 0 220 1 0 76 0 1 339 6 0 114 0 1 65 0 3 76 7 5 117 2 3 180 1 5 4 0 1 274 3 2 279 0 4 176 0 1 33 chain 102498 chrY 59373566 + 18868841 18870047 L1PA5 6144 - 0 1211 36132 332 9 12 327 0 1 484 0 1 54 chain 503619 chrY 59373566 + 18873936 18880095 L1PA5 6144 + 4 6132 6626 130 9 0 856 0 1 681 6 4 341 0 1 4 1 0 78 0 3 4 0 1 200 1 0 120 7 11 724 11 7 114 0 1 69 11 5 235 3 0 143 33 17 874 2 0 1153 2 0 31 0 1 33 4 5 59 0 2 69 1 6 5 5 0 140 chain 6866 chrY 59373566 + 18906430 18906537 MER1A 529 + 421 529 178451 34 11 12 62 chain 10253 chrY 59373566 + 18911045 18911162 MER4A1 472 + 30 147 159362 117 chain 25091 chrY 59373566 + 18923707 18924005 AluY 311 + 9 308 104338 123 0 1 175 chain 19711 chrY 59373566 + 18927982 18928237 L1PA4 6152 + 5886 6143 128063 91 14 15 4 0 1 146 chain 107992 chrY 59373566 + 18931550 18932907 L1PA7 6471 - 323 1692 34720 518 0 8 615 13 17 211 chain 10411 chrY 59373566 + 18958132 18958257 L1PB1 5432 - 378 503 158636 125 chain 25325 chrY 59373566 + 18958974 18959239 AluYa8 305 + 40 305 103099 265 chain 232609 chrY 59373566 + 18966850 18969577 L1HS 6032 - 2271 5002 17167 1912 8 9 779 0 3 28 chain 192852 chrY 59373566 + 18969595 18972182 L1PA3long 6157 + 3897 6156 19781 428 325 0 858 4 1 28 0 2 86 1 0 84 1 0 214 0 1 553 1 0 4 chain 93408 chrY 59373566 + 18974277 18975342 L1PA4 6152 - 1452 2517 38532 1065 chain 117230 chrY 59373566 + 18975348 18976790 L1PA4 6152 + 4698 6151 32044 451 0 5 166 0 1 673 1 3 10 7 0 77 22 32 35 chain 3126 chrY 59373566 + 18984579 18984711 MER58A 224 + 49 183 222430 29 84 86 19 chain 290516 chrY 59373566 + 18986990 18990675 HERVK9-int 4720 + 474 4692 13988 142 0 457 514 0 2 516 0 2 5 1 0 733 0 1 251 0 1 90 1 4 121 17 20 268 17 27 229 0 48 27 1 3 105 7 6 565 0 6 75 chain 43441 chrY 59373566 + 18990703 18991215 MER9a1 513 + 0 513 64882 157 0 1 355 chain 68834 chrY 59373566 + 19000522 19001294 L1PA3long 6157 - 0 772 48882 772 chain 19492 chrY 59373566 + 19003555 19003836 L1PA5 6144 - 0 308 128677 11 3 1 27 0 28 169 18 19 53 chain 510637 chrY 59373566 + 19013685 19019646 L1PA3long 6157 + 0 6156 6105 38 7 38 77 1 2 612 9 137 334 0 1 713 1 0 155 0 3 220 1 0 366 0 1 621 5 4 427 0 1 17 0 1 205 0 31 2152 chain 32358 chrY 59373566 + 19019675 19020047 L1PA3long 6157 + 5783 6155 80261 372 chain 481652 chrY 59373566 + 19024744 19030085 L1PA2 6032 + 675 6032 7666 838 0 9 1536 0 5 328 0 1 1767 0 1 872 chain 61500 chrY 59373566 + 19055220 19056212 MER11A 1151 - 31 1151 52116 65 0 2 63 6 7 33 1 2 27 6 7 30 18 0 22 28 61 54 0 4 204 0 1 31 24 27 34 17 18 130 8 6 33 6 9 20 1 0 46 0 91 10 0 8 75 chain 393581 chrY 59373566 + 19081554 19086219 L1PA3long 6157 - 15 4681 10335 235 17 17 686 0 1 567 0 1 292 0 1 121 4 2 524 1 2 290 0 1 139 5 4 66 5 6 497 3 0 364 1 0 309 1 2 67 1 0 129 0 2 341 chain 2834 chrY 59373566 + 19092048 19092196 HAL1-2a_MD 234 - 115 164 228165 14 75 0 17 24 0 18 chain 5418 chrY 59373566 + 19095189 19095266 MADE1 96 - 7 85 190813 40 6 7 31 chain 523915 chrY 59373566 + 19096928 19102953 L1PA3long 6157 + 4 6157 4774 148 11 12 235 0 2 313 1 2 60 0 128 1411 4 0 382 1 0 1092 2 0 1643 0 1 464 0 1 216 0 1 42 chain 3225 chrY 59373566 + 19120990 19121025 MER68B 564 + 224 259 220512 35 chain 14367 chrY 59373566 + 19123388 19123930 LTR12D 1347 - 258 760 143321 7 1 0 31 221 284 56 120 18 106 chain 6975 chrY 59373566 + 19123730 19123811 LTR12D 1347 - 829 910 177641 81 chain 5907 chrY 59373566 + 19128964 19129041 L1PA15 4387 + 4102 4178 186117 28 1 0 48 chain 36871 chrY 59373566 + 19137377 19137874 L1PB 1623 - 143 633 73693 25 3 2 7 1 0 143 5 0 313 chain 4399 chrY 59373566 + 19137998 19138053 L1PB1 5432 + 5058 5114 201938 43 0 1 12 chain 8402 chrY 59373566 + 19143643 19143738 L1PA5 6144 - 5 100 168841 95 chain 4408 chrY 59373566 + 19153875 19153924 L1P5 443 + 380 429 201830 49 chain 114642 chrY 59373566 + 19154804 19156196 LTR12C 1709 + 0 1709 32905 266 0 1 90 12 6 214 2 1 214 1 319 113 0 4 73 0 1 407 chain 5451 chrY 59373566 + 19159588 19159735 MER4A1 472 + 169 336 190523 17 2 0 8 16 18 11 34 54 59 chain 553402 chrY 59373566 + 19172800 19178843 L1PA2 6032 - 0 6032 1020 3469 0 1 8 1 0 31 12 0 2312 0 1 210 chain 6005 chrY 59373566 + 19204991 19205065 MLT1C 463 - 358 432 185198 74 chain 173796 chrY 59373566 + 19209667 19211575 L1PA2 6032 - 3 1912 21613 154 0 1 1754 chain 31888 chrY 59373566 + 19211575 19211926 L1PA2 6032 + 3764 4116 80736 53 1 2 297 chain 6671 chrY 59373566 + 19214495 19214612 L1MB3 1562 + 1139 1264 179893 29 25 33 63 chain 6077 chrY 59373566 + 19216147 19216220 THE1B 368 - 66 138 184599 60 1 0 12 chain 51666 chrY 59373566 + 19245633 19246249 HERV17-int 4347 - 0 615 57849 173 0 1 201 2 0 240 chain 29136 chrY 59373566 + 19293494 19293799 AluYb8 318 + 12 317 88385 305 chain 374457 chrY 59373566 + 19299147 19303906 HERV9-int 5642 - 834 5642 10940 36 12 13 722 6 7 1125 4 2 745 11 7 563 13 9 472 4 0 183 0 1 90 0 59 43 0 1 126 6 8 55 2 3 127 8 5 406 chain 92278 chrY 59373566 + 19310093 19311295 L1PA7 6471 - 17 1249 38882 682 3 4 6 0 2 24 0 2 15 1 4 98 0 3 100 0 16 57 1 2 204 0 3 6 1 0 4 chain 38711 chrY 59373566 + 19312498 19312932 L1PA4 6152 + 5717 6151 71135 434 chain 503755 chrY 59373566 + 19324647 19330722 L1PA4 6152 + 4 6141 6620 142 7 21 792 0 1 74 2 0 207 1 0 456 0 1 20 4 5 540 0 2 1000 0 2 14 5 6 228 0 1 334 8 2 499 0 4 366 0 4 393 0 1 58 6 5 122 0 4 131 0 28 289 0 8 377 chain 70521 chrY 59373566 + 19330730 19331585 L1PA5 6144 + 5284 6143 48149 693 13 18 5 1 0 143 chain 29532 chrY 59373566 + 19339988 19340298 AluYa5 310 - 0 310 86510 310 chain 3020 chrY 59373566 + 19347296 19347328 LTR8A 794 + 209 241 224612 32 chain 175959 chrY 59373566 + 19351307 19353756 L1PA7 6471 - 21 2449 21357 375 2 0 112 5 0 16 0 3 7 29 14 78 0 1 49 9 11 74 0 1 44 44 8 41 1 0 362 0 1 165 1 2 126 4 5 57 0 1 78 0 1 149 0 4 152 0 1 266 10 11 79 26 46 88 chain 13219 chrY 59373566 + 19375423 19375566 L1PA3long 6157 + 5168 5311 147397 143 chain 68850 chrY 59373566 + 19375566 19376347 L1PA3long 6157 + 5312 6093 48874 137 1 0 558 5 6 80 chain 5419 chrY 59373566 + 19376347 19376410 L1PA3long 6157 + 6094 6157 190810 63 chain 18546 chrY 59373566 + 19389853 19390245 L1PB1 5432 + 5064 5423 131368 36 6 7 7 3 0 24 1 0 7 2 1 11 2 0 3 2 0 8 2 0 52 2 1 16 1 0 44 1 0 20 19 7 19 7 4 15 2 0 24 1 0 14 9 8 12 1 0 19 chain 41951 chrY 59373566 + 19399648 19400233 PABL_B 668 + 53 648 66683 4 0 1 39 20 29 155 1 0 69 1 0 86 1 2 87 1 2 121 chain 506966 chrY 59373566 + 19423512 19429604 L1PA4 6152 + 0 6151 6398 452 25 19 109 1 0 225 0 1 136 0 4 94 1 0 44 0 1 151 1 0 212 0 1 863 2 1 979 0 1 61 4 1 1280 1 6 666 1 58 375 1 2 106 0 1 302 chain 109110 chrY 59373566 + 19433163 19434441 L1PA3long 6157 - 1521 2799 34396 5 0 1 941 1 0 331 chain 135382 chrY 59373566 + 19434441 19435979 L1PA3long 6157 + 4618 6157 26945 1389 0 1 149 chain 6070 chrY 59373566 + 19456906 19457443 HERVFH21-int 991 - 152 500 184657 29 390 208 12 1 0 5 21 17 30 8 6 41 chain 7197 chrY 59373566 + 19458821 19458906 LTR30 714 - 629 714 176081 85 chain 3963 chrY 59373566 + 19464321 19464371 HERV9-int 5642 - 4626 4676 207941 50 chain 7981 chrY 59373566 + 19465746 19465931 LTR12D 1347 - 595 901 171165 49 70 189 41 0 2 25 chain 2637 chrY 59373566 + 19465795 19465853 LTR12D 1347 - 596 629 213804 12 25 0 21 chain 5114 chrY 59373566 + 19465954 19466014 LTR12D 1347 - 654 714 193929 60 chain 7413 chrY 59373566 + 19466972 19467241 THE1D 372 + 18 292 174692 59 159 164 51 chain 22442 chrY 59373566 + 19477276 19477525 L1PA3long 6157 + 5908 6157 118284 249 chain 3107 chrY 59373566 + 19479616 19479655 Tigger5 388 + 325 364 222800 39 chain 103208 chrY 59373566 + 19486930 19488063 L1HS 6032 - 0 1122 35923 7 10 0 605 0 1 247 2 0 262 chain 122421 chrY 59373566 + 19488063 19489363 L1HS 6032 + 3637 4937 30244 1300 chain 35084 chrY 59373566 + 19490633 19491105 LTR15 485 - 7 485 76071 21 0 1 14 2 0 5 1 0 158 7 11 93 0 2 22 0 2 149 chain 11112 chrY 59373566 + 19510063 19510219 L1PA7 6471 - 1 151 155769 11 3 1 57 9 5 76 chain 11365 chrY 59373566 + 19516592 19516732 LTR66 600 + 0 140 154836 140 chain 71613 chrY 59373566 + 19516798 19517774 LTR13 1007 + 27 1006 47650 322 1 2 30 4 5 55 1 0 242 6 0 8 6 14 110 2 3 137 22 21 30 chain 39435 chrY 59373566 + 19533689 19535096 HERV30-int 1034 - 109 897 70111 12 29 0 28 33 0 17 119 25 18 3 1 15 56 4 19 50 0 27 52 0 24 48 10 39 194 61 33 2 0 6 11 8 16 34 0 35 25 10 85 1 0 78 12 0 42 5 0 44 40 7 61 1 0 39 7 1 13 24 0 10 chain 256486 chrY 59373566 + 19539578 19542577 L1PA4 6152 - 1 3022 15908 242 3 5 776 1 2 492 1 0 282 0 4 136 12 28 245 0 1 438 1 0 370 chain 29100 chrY 59373566 + 19547171 19547481 AluYa5 310 + 0 309 88550 132 1 0 177 chain 448813 chrY 59373566 + 19551590 19557747 L1PA6 6164 - 15 6164 8794 133 17 16 46 6 9 152 2 0 479 2 0 26 0 1 366 0 1 112 4 6 176 0 1 71 2 1 52 0 5 482 0 1 171 1 2 138 1 2 69 0 1 4 6 5 88 0 1 229 1 2 116 1 2 158 116 9 256 0 1 4 12 19 266 6 1 130 6 5 220 0 1 18 1 2 159 0 64 321 3 0 5 1 4 354 0 1 361 0 17 41 0 1 198 1 0 118 8 0 16 10 12 225 56 57 108 0 5 26 chain 5841 chrY 59373566 + 19554731 19554810 L1PA6 6164 - 3763 3841 186758 72 1 0 6 chain 63522 chrY 59373566 + 19558678 19559427 L1PA4 6152 - 1 750 51239 749 chain 282310 chrY 59373566 + 19559427 19562696 L1PA4 6152 + 1821 5396 14517 66 1 0 1297 0 1 1298 0 301 365 0 5 242 chain 9326 chrY 59373566 + 19563169 19563505 L1PB1 5432 + 5121 5430 163911 13 1 0 12 1 0 12 7 3 6 2 0 13 6 5 35 2 1 16 1 0 18 106 95 20 1 0 21 10 9 4 1 0 18 2 0 8 chain 5359 chrY 59373566 + 19570781 19570844 L1P 111 - 2 64 191441 7 1 0 55 chain 87422 chrY 59373566 + 19597668 19598936 L1PB1 5432 + 2526 3818 40594 65 2 1 180 8 9 53 6 0 11 1 0 63 0 1 310 21 67 187 21 25 230 21 0 8 0 1 81 chain 18357 chrY 59373566 + 19609569 19609820 L1PA7 6471 + 6213 6464 131914 7 0 7 33 4 0 199 3 0 5 chain 3346 chrY 59373566 + 19639539 19639616 L1MA2 4263 - 205 283 218108 25 25 26 27 chain 10018 chrY 59373566 + 19640207 19640511 THE1C 375 - 39 361 160496 15 0 1 28 0 8 39 57 0 8 0 59 37 90 97 30 chain 89863 chrY 59373566 + 19651850 19652839 L1PA2 6032 - 604 1593 39696 989 chain 53892 chrY 59373566 + 19652840 19653459 L1PA2 6032 + 5434 6032 56434 446 0 1 142 22 0 9 chain 57823 chrY 59373566 + 19660699 19661478 L1PB1 5432 - 761 1555 54074 49 7 8 226 9 11 169 1 3 220 0 10 98 chain 75427 chrY 59373566 + 19701649 19702502 L1PA3long 6157 - 1873 2726 45804 853 chain 164322 chrY 59373566 + 19702532 19704388 L1PA3long 6157 + 4304 6152 22767 1514 1 0 196 7 0 138 chain 29588 chrY 59373566 + 19721608 19721951 HERV-Fc1_LTR1 345 + 0 345 86245 279 0 2 64 chain 410118 chrY 59373566 + 19721951 19726526 HERV-Fc1-int 4575 + 0 4575 9799 36 1 0 2116 6 7 293 0 1 582 1 0 222 1 2 992 3 1 119 0 1 203 chain 30086 chrY 59373566 + 19726526 19726866 HERV-Fc1_LTR1 345 + 0 339 84538 280 1 0 59 chain 25216 chrY 59373566 + 19728626 19728993 L1PA8 5853 - 786 1154 103655 41 0 1 5 20 14 11 9 13 151 2 4 128 chain 24090 chrY 59373566 + 19743433 19743748 AluSp 311 + 0 307 109796 85 3 0 210 5 0 12 chain 67176 chrY 59373566 + 19796939 19797994 HERVK11-int 2540 + 1213 2234 49578 12 2 1 25 13 3 27 26 9 410 36 31 104 1 0 66 6 7 53 4 5 52 13 12 73 21 20 111 chain 473028 chrY 59373566 + 19801477 19808085 L1PA4 6152 - 16 6149 7945 271 0 228 17 0 1 245 1 0 72 3 1 520 0 1 414 1 2 202 1 4 6 3 0 189 731 0 216 0 1 195 0 1 36 1 0 142 9 8 806 0 1 185 9 9 42 0 1 218 8 20 46 0 1 565 0 1 44 11 20 125 0 1 644 13 15 617 chain 17446 chrY 59373566 + 19803432 19803630 L1PA2 6032 - 4 198 134387 7 4 0 187 chain 47312 chrY 59373566 + 19803630 19804153 L1PA2 6032 + 5298 5821 60778 523 chain 532333 chrY 59373566 + 19820242 19826381 L1PA3long 6157 + 6 6157 3927 1964 7 8 80 1 2 636 0 1 31 0 4 1134 0 1 628 0 2 410 1 2 28 1 2 1218 chain 47723 chrY 59373566 + 19856699 19857284 LTR14C 587 + 2 587 60672 585 chain 172221 chrY 59373566 + 19916207 19918212 L1PA4 6152 - 5 2026 21789 846 1 0 424 0 4 244 1 0 15 0 2 110 0 4 139 0 8 225 chain 122102 chrY 59373566 + 19918231 19919724 L1PA4 6152 - 4655 6139 30347 190 0 1 726 1 0 64 3 0 54 12 6 443 chain 25971 chrY 59373566 + 19977010 19977285 L1HS 6032 - 1152 1427 98257 275 chain 103553 chrY 59373566 + 19977285 19978389 L1HS 6032 + 4928 6032 35847 1104 chain 341966 chrY 59373566 + 20001500 20005783 L1P1 4361 + 59 4341 11831 55 0 1 16 0 1 111 0 10 633 0 1 8 0 1 343 0 1 311 0 2 1014 1 12 22 0 1 169 6 8 41 0 1 4 2 1 107 26 0 750 9 6 462 1 0 154 1 0 23 2 1 12 chain 517424 chrY 59373566 + 20006435 20012659 L1PA4 6152 + 2 6143 5433 369 24 1 204 1 0 257 41 0 187 3 0 14 2 0 209 0 1 310 24 0 660 0 1 104 1 0 507 0 1 4 2 1 1805 0 3 214 0 7 1282 chain 493410 chrY 59373566 + 20056065 20062074 L1PA4 6152 + 6 6137 7207 194 1 0 4 0 1 148 7 8 860 16 15 307 0 24 65 1 0 106 0 1 46 6 7 585 4 37 847 1 3 234 6 11 519 0 1 290 1 0 307 3 16 112 0 3 5 17 57 979 0 1 338 chain 495084 chrY 59373566 + 20067663 20073672 L1PA4 6152 - 15 6146 7117 338 0 1 1001 0 43 112 3 16 307 1 0 290 0 1 519 6 11 234 1 3 847 4 37 585 6 7 46 0 1 105 1 0 66 0 24 307 16 15 860 7 8 148 0 1 4 1 0 194 chain 517424 chrY 59373566 + 20117107 20123331 L1PA4 6152 - 9 6150 5434 1282 0 7 217 0 3 1802 2 1 4 0 1 507 1 0 106 0 1 658 24 0 317 0 1 202 2 0 14 3 0 186 41 0 258 1 0 204 24 1 369 chain 340806 chrY 59373566 + 20123983 20128265 L1P1 4361 - 20 4302 11877 12 2 1 23 1 0 154 1 0 462 9 6 750 26 0 107 2 1 4 0 1 41 8 10 167 0 1 22 1 12 1014 0 2 311 0 1 343 0 1 8 0 1 443 6 7 183 0 10 111 0 1 16 0 1 55 chain 103553 chrY 59373566 + 20201384 20202488 L1HS 6032 - 0 1104 35848 1104 chain 25971 chrY 59373566 + 20202488 20202763 L1HS 6032 + 4605 4880 98256 275 chain 289917 chrY 59373566 + 20260051 20263578 L1PA4 6152 + 13 6152 14025 443 12 6 54 3 0 64 1 0 726 0 1 190 19 2629 225 0 8 139 0 4 110 0 2 21 1 0 238 0 4 424 1 0 845 5 0 6 chain 37172 chrY 59373566 + 20314455 20314987 LTR14C 587 + 0 538 73278 33 9 8 4 0 1 46 0 1 26 23 25 178 7 10 206 chain 47723 chrY 59373566 + 20322490 20323075 LTR14C 587 - 0 585 60673 585 chain 18306 chrY 59373566 + 20350210 20350478 AluY 311 + 25 310 132062 101 5 0 78 22 44 62 chain 511850 chrY 59373566 + 20353643 20359537 L1PA3long 6157 - 245 6151 5993 973 1 2 28 1 2 410 0 2 628 0 1 1134 0 4 37 0 1 630 1 2 80 7 8 1964 chain 474131 chrY 59373566 + 20371694 20378302 L1PA4 6152 + 3 6136 7907 617 13 15 517 2 0 6 1 0 4 0 3 114 0 1 115 0 9 65 0 1 565 0 1 46 8 20 219 0 1 41 9 9 185 0 1 806 9 8 142 1 0 36 0 1 195 0 1 206 731 0 411 1 2 414 0 1 520 3 1 72 1 0 245 0 1 17 0 228 271 chain 47714 chrY 59373566 + 20375623 20376149 L1PA2 6032 - 208 734 60679 526 chain 17446 chrY 59373566 + 20376149 20376347 L1PA2 6032 + 5834 6028 134386 187 4 0 7 chain 26721 chrY 59373566 + 20450780 20452312 L1PA8 5853 + 4699 5846 97255 128 2 4 151 9 13 11 1152 761 79 chain 30086 chrY 59373566 + 20452907 20453247 HERV-Fc1_LTR1 345 - 6 345 84539 59 1 0 280 chain 411159 chrY 59373566 + 20453247 20457823 HERV-Fc1-int 4575 - 0 4575 9774 203 0 1 119 3 1 1216 1 0 582 0 1 293 6 7 2116 1 0 36 chain 29588 chrY 59373566 + 20457823 20458166 HERV-Fc1_LTR1 345 - 0 345 86246 65 0 2 278 chain 163201 chrY 59373566 + 20475384 20477246 L1PA3long 6157 - 5 1846 22922 138 7 0 196 1 0 1495 13 0 12 chain 75427 chrY 59373566 + 20477270 20478123 L1PA3long 6157 + 3431 4284 45803 853 chain 5574 chrY 59373566 + 20508006 20508078 5S 121 - 0 71 189328 48 1 0 23 chain 58655 chrY 59373566 + 20518299 20519078 L1PB1 5432 + 3877 4671 53603 98 0 10 220 1 3 146 0 1 6 1 0 16 9 11 241 0 1 41 chain 53892 chrY 59373566 + 20526318 20526937 L1PA2 6032 - 0 598 56435 9 22 0 142 0 1 446 chain 89863 chrY 59373566 + 20526938 20527927 L1PA2 6032 + 4439 5428 39695 989 chain 18357 chrY 59373566 + 20569951 20570202 L1PA7 6471 - 7 258 131915 5 3 0 199 4 0 33 0 7 7 chain 87422 chrY 59373566 + 20580836 20582104 L1PB1 5432 - 1614 2906 40595 81 0 1 8 21 0 230 21 25 187 21 67 310 0 1 63 1 0 3 6 0 61 8 9 180 2 1 65 chain 42822 chrY 59373566 + 20701267 20701770 L1PA3long 6157 - 0 492 65626 148 9 0 55 8 6 283 chain 26264 chrY 59373566 + 20701770 20702056 L1PA3long 6157 + 5363 5649 98963 286 chain 34975 chrY 59373566 + 20806926 20807368 LTR7 482 + 0 473 76221 30 0 1 50 4 0 180 0 31 20 0 1 103 15 17 40 chain 69434 chrY 59373566 + 20809235 20810067 L1PA4 6152 + 5318 6151 48636 579 0 1 253 chain 45988 chrY 59373566 + 20833673 20834260 LTR14C 587 + 0 587 62052 376 1 2 96 1 0 113 chain 5984 chrY 59373566 + 20841868 20841943 MER3 215 + 62 137 185390 75 chain 26264 chrY 59373566 + 20942122 20942408 L1PA3long 6157 - 508 794 98964 286 chain 42822 chrY 59373566 + 20942408 20942911 L1PA3long 6157 + 5665 6157 65625 283 8 6 55 9 0 148 chain 28193 chrY 59373566 + 20989904 20990200 AluYa5 310 - 14 310 92334 296 chain 12702 chrY 59373566 + 21042490 21042644 LTR12C 1709 + 932 1086 149442 154 chain 525142 chrY 59373566 + 21055785 21061815 L1PA3long 6157 + 0 6156 4673 152 0 1 628 0 128 253 0 3 246 0 9 905 0 1 637 3 0 299 2 1 506 0 1 901 4 1 29 11 4 14 0 1 1184 2 1 148 5 2 101 chain 4025 chrY 59373566 + 21066382 21066430 MLT1A 405 + 314 362 206996 48 chain 88858 chrY 59373566 + 21076954 21078140 L1PA7 6471 + 4902 6105 40058 53 3 1 248 0 1 211 0 6 138 12 13 40 3 0 6 5 12 311 6 13 150 chain 4241 chrY 59373566 + 21087736 21087876 MLT1C 463 - 272 403 203997 13 40 32 6 1 0 10 25 25 45 chain 43889 chrY 59373566 + 21088528 21089040 MER9a1 513 + 0 513 64345 38 0 1 4 1 0 261 0 1 208 chain 26984 chrY 59373566 + 21092569 21092903 L1PA6 6164 + 5827 6162 96334 187 5 6 142 chain 6397 chrY 59373566 + 21096974 21097050 L1PA8 5853 + 5777 5853 182046 76 chain 14194 chrY 59373566 + 21106645 21106807 MER4E1 777 - 8 170 143901 162 chain 26673 chrY 59373566 + 21109923 21110244 HERVH-int 3825 - 0 324 97416 205 0 1 72 0 2 44 chain 296736 chrY 59373566 + 21118733 21155409 L1PA7 6471 + 1161 6456 13604 78 4 6 23 3 4 108 16 8 126 0 13 34 3 2 205 9 6 376 5 6 12 1 2 49 0 1 65 1 0 68 0 3 16 194 8 207 19 12 15 973 426 31 0 1 130 15 19 145 0 5 34 1 2 73 5 6 8 1 0 8 6 5 202 47 50 65 18 19 26 7 7 48 0 1 172 0 1 25 0 13 421 318 0 30 2 3 280 1 0 78 6 1 78 0 6 119 27808 0 351 1 0 111 1 4 121 0 1 59 2 6 290 2579 19 23 1 0 319 chain 12204 chrY 59373566 + 21119969 21120117 L1PA7 6471 + 1774 1922 151405 148 chain 45144 chrY 59373566 + 21120370 21121342 MER11B 1079 + 0 978 62875 225 0 5 129 0 1 65 48 46 28 82 86 22 20 23 32 103 92 16 53 56 26 18 19 13 0 1 33 0 1 59 chain 43607 chrY 59373566 + 21123753 21124606 L1PA7 6471 + 5163 5736 64676 212 281 1 85 0 1 82 1 0 4 1 2 68 2 0 92 0 1 25 chain 43099 chrY 59373566 + 21124615 21125126 MER9a3 513 - 0 513 65289 244 0 1 228 0 1 39 chain 107330 chrY 59373566 + 21170234 21171416 L1PA2 6032 - 764 1943 34885 88 4 1 1090 chain 68042 chrY 59373566 + 21171416 21172177 L1PA2 6032 + 5276 6032 49046 385 0 1 198 0 1 23 8 1 147 chain 331732 chrY 59373566 + 21196517 21200322 L1HS 6032 + 5 3815 12138 242 10 9 76 0 1 941 9 0 9 0 9 899 0 1 29 1 3 570 0 1 693 0 1 326 chain 11006 chrY 59373566 + 21200322 21200446 L1PA2 6032 + 5908 6032 156181 124 chain 20538 chrY 59373566 + 21201092 21201371 HERVIP10FH-int 2884 - 2457 2731 125519 20 0 3 5 9 1 6 0 1 131 0 1 51 2 0 55 chain 36311 chrY 59373566 + 21206721 21207249 LTR10F 562 + 8 562 74490 171 12 40 10 3 0 67 3 4 119 9 10 69 3 2 62 chain 12204 chrY 59373566 + 21207954 21208329 LTR12C 1709 - 506 745 151407 21 101 0 23 30 26 15 63 32 122 chain 3353 chrY 59373566 + 21207979 21208019 LTR12C 1709 - 991 1031 218004 40 chain 3894 chrY 59373566 + 21208144 21208205 LTR12C 1709 - 957 1059 196777 20 8 49 33 chain 71471 chrY 59373566 + 21220656 21221528 MER11D 897 + 0 897 47704 580 7 30 246 6 8 33 chain 290191 chrY 59373566 + 21244222 21248326 HERV17-int 4347 + 27 4347 14008 21 1 0 30 1 0 13 4 0 10 53 50 96 0 1 9 3 33 16 21 3 22 38 468 591 4 3 58 0 94 58 0 1 370 0 3 539 2 4 156 322 5 233 5 6 826 5 6 7 1 0 19 1 0 569 chain 11586 chrY 59373566 + 21260539 21260888 L1PB1 5432 + 5121 5422 153946 17 1 0 4 3 2 13 18 12 51 2 1 16 1 0 11 17 0 29 99 81 12 1 0 22 1 0 12 1 0 18 chain 13461 chrY 59373566 + 21270259 21270639 L1PA5 6144 - 0 374 9367 143 9 10 213 7 0 8 chain 518842 chrY 59373566 + 21270816 21276947 L1PA3long 6157 - 7 6148 5287 1267 0 4 173 2 1 65 9 8 690 0 1 43 0 2 50 0 1 818 0 1 765 0 1 160 0 1 1525 1 0 16 1 2 118 1 2 427 chain 190013 chrY 59373566 + 21276954 21282318 L1PA5 6144 - 374 6137 9367 444 13 14 341 0 2 310 2 1 165 10 11 434 0 1 13 3 6 465 1 2 26 27 26 1082 1 2 116 1 2 10 0 380 92 0 1 49 0 3 351 0 1 382 4 5 299 6 9 5 3 0 37 0 3 240 107 108 325 chain 4740 chrY 59373566 + 21309014 21309071 MER41B 635 + 468 525 198021 57 chain 56893 chrY 59373566 + 21314825 21315643 MER11B 1079 - 33 1072 54602 18 1 14 133 1 0 83 68 265 124 4 10 36 0 5 322 16 17 12 chain 46716 chrY 59373566 + 21329080 21329667 LTR14C 587 + 0 587 61444 103 2 0 10 0 1 37 0 1 435 chain 488422 chrY 59373566 + 21334380 21340536 L1PA5 6144 + 3 6142 7423 285 19 8 702 0 1 5 2 1 39 0 1 37 4 9 139 7 0 487 0 1 582 1 0 4 0 1 8 0 1 314 16 1 566 3 1 471 11 12 362 0 1 240 5 6 43 10 14 289 0 1 94 2 1 562 2 3 249 0 1 280 0 1 316 chain 485545 chrY 59373566 + 21347034 21353134 L1PA5 6144 - 18 6144 7537 232 3 4 78 2 1 24 0 9 97 17 1 360 7 8 7 0 11 193 0 1 29 0 1 48 1 0 363 1 0 5 4 5 20 2 1 35 1 0 434 0 1 300 4 0 640 0 1 243 1 0 256 0 1 410 0 1 67 0 1 406 0 1 122 0 1 141 1 13 103 0 1 236 7 6 162 0 1 76 0 1 4 9 8 566 0 1 70 1 0 63 0 7 249 chain 450996 chrY 59373566 + 21375846 21381103 L1PA3long 6157 - 3 5272 8737 1483 0 1 375 0 2 1030 0 1 9 0 4 78 2 1 473 2 0 211 0 1 1093 0 1 92 0 4 186 8 9 215 chain 18085 chrY 59373566 + 21381103 21381315 L1P1 4361 - 760 972 132627 212 chain 90094 chrY 59373566 + 21381325 21382670 HERV9-int 5642 + 3674 4824 39615 36 198 0 143 0 2 319 1 0 59 0 1 262 0 1 18 1 5 122 4 0 182 chain 7816 chrY 59373566 + 21381418 21381504 L1P1 4361 + 3312 3398 172205 86 chain 193451 chrY 59373566 + 21392295 21394838 L1P1 4361 - 1805 4357 19742 152 0 1 474 0 3 128 0 1 7 16 17 339 1 0 213 13 14 640 13 14 4 0 1 227 9 8 196 2 4 109 chain 12708 chrY 59373566 + 21398583 21398739 L1PA7 6471 - 2 158 149427 156 chain 30641 chrY 59373566 + 21409981 21410408 L1PA7 6471 + 6007 6469 83137 200 19 20 48 15 49 145 chain 495612 chrY 59373566 + 21416338 21422410 L1PA4 6152 + 1 6141 7093 123 22 8 10 28 42 64 0 1 116 6 16 649 1 0 232 0 3 150 2 7 192 0 9 122 0 1 567 2 0 39 6 4 504 0 12 298 0 1 199 0 1 676 1 0 422 0 2 163 0 1 287 2 29 91 0 1 4 1 0 254 0 1 260 1 2 328 2 0 8 0 1 240 chain 2676 chrY 59373566 + 21424999 21425236 MER41-int 2638 - 501 708 230467 29 191 161 17 chain 37715 chrY 59373566 + 21444417 21444892 LTR15 485 - 10 485 72534 18 0 1 24 7 0 151 0 4 125 0 2 150 chain 9594 chrY 59373566 + 21447399 21447708 PRIMA4_LTR 623 - 42 420 162627 19 65 208 13 56 0 73 7 9 48 20 0 8 chain 102733 chrY 59373566 + 21447725 21448952 L1PA4 6152 - 1936 3166 36072 171 0 1 433 0 1 94 1 0 419 6 8 103 chain 32028 chrY 59373566 + 21448952 21449327 L1PA4 6152 + 4259 4634 80666 375 chain 130275 chrY 59373566 + 21449327 21450839 L1PA4 6152 + 4635 6151 28026 665 0 1 68 0 1 19 0 1 575 0 1 185 chain 214342 chrY 59373566 + 21456749 21459656 HERVK9-int 4720 + 37 4720 18208 12 8 5 4 1 0 65 2 1 34 17 16 210 15 14 33 6 7 100 0 1 105 0 1 74 0 7 82 1 0 370 0 185 132 1 924 143 0 1 88 13 652 4 1 0 59 0 5 256 11 12 235 0 6 101 16 30 560 7 8 141 chain 3298 chrY 59373566 + 21462854 21462890 MER57B1 401 + 95 131 219025 36 chain 152727 chrY 59373566 + 21473615 21475471 L1PA4 6152 - 1 1853 24263 5 2 0 133 0 7 13 7 0 410 4 1 198 1 0 268 1 2 136 0 2 347 1 0 330 chain 30823 chrY 59373566 + 21498538 21498901 L1P1 4361 + 3966 4328 82826 185 1 0 55 0 1 98 1 0 23 chain 146890 chrY 59373566 + 21500370 21502172 L1PA4 6152 - 245 2031 25034 89 0 1 383 0 3 130 1 2 42 3 7 65 36 8 4 1 0 24 0 4 1024 chain 100068 chrY 59373566 + 21511129 21512457 L1PA7 6471 + 5105 6454 36757 225 0 1 23 1 13 202 2 0 33 2 1 11 0 2 53 0 1 39 7 8 118 4 11 608 chain 9464 chrY 59373566 + 21513666 21513813 LTR12 884 + 94 218 163252 88 24 0 26 0 1 9 chain 29100 chrY 59373566 + 21515580 21515890 AluYa5 310 + 0 309 88549 132 1 0 177 chain 13402 chrY 59373566 + 21528269 21528466 L1PA4 6152 + 5938 6135 146701 58 1 8 11 14 7 113 chain 539438 chrY 59373566 + 21535169 21541198 L1PA2 6032 - 5 6030 2907 10 3 0 5 1 0 241 0 1 2384 0 1 823 1 0 1668 1 0 638 6 5 21 0 1 227 chain 20535 chrY 59373566 + 21565717 21565959 L1PA5 6144 + 5901 6143 125528 242 chain 3585 chrY 59373566 + 21568178 21568218 MER52D 1964 - 818 858 213902 40 chain 3298 chrY 59373566 + 21571069 21571105 L1P5 443 + 269 305 219000 36 chain 31406 chrY 59373566 + 21573849 21574350 LTR7 482 + 0 482 81804 96 70 19 132 0 31 76 1 0 65 12 14 49 chain 11035 chrY 59373566 + 21574352 21574489 HERVH-int 3825 + 0 138 156072 21 0 1 116 chain 516417 chrY 59373566 + 21574563 21580903 L1PA3long 6157 - 15 6153 5537 571 0 1 74 334 0 362 1 2 2442 1 0 157 3 0 485 1 2 4 1 0 190 0 1 6 0 1 703 3 6 229 11 138 479 4 5 120 11 12 148 chain 29777 chrY 59373566 + 21575222 21575542 AluYb8 318 - 0 318 85553 192 2 0 126 chain 33334 chrY 59373566 + 21589125 21589612 LTR7 482 + 0 470 78679 181 51 0 5 0 1 43 0 31 158 12 14 37 chain 292759 chrY 59373566 + 21599170 21602953 L1PA6 6164 + 2260 6160 13838 75 32 14 92 1 4 58 0 1 236 4 3 302 0 1 59 0 4 80 0 1 68 0 3 280 12 15 27 0 15 85 4 6 866 6 7 310 0 73 139 4 5 7 0 2 66 1 6 89 1 16 43 0 4 395 1 2 20 5 6 207 0 1 39 10 12 150 3 0 6 chain 18943 chrY 59373566 + 21624751 21624976 L1PA3long 6157 + 5936 6157 130248 214 4 0 7 chain 515722 chrY 59373566 + 21629401 21635554 L1PA4 6152 - 0 6142 5597 49 0 1 63 0 1 865 1 0 1241 0 1 46 1 0 4 12 13 59 0 1 89 8 0 37 1 0 165 0 1 339 1 0 361 6 0 246 5 1 671 0 1 812 0 1 84 0 7 6 7 1 501 0 1 17 0 1 456 chain 265141 chrY 59373566 + 21668520 21672103 L1P2 5180 - 1575 5178 15434 189 0 59 780 4 0 24 0 1 358 0 1 356 2 9 471 15 16 92 0 1 66 66 13 207 4 29 140 1 0 6 1 0 198 1 3 70 2 1 7 1 0 103 40 40 113 7 6 97 1 0 5 24 10 132 chain 184795 chrY 59373566 + 21679278 21681917 L1PA8 5853 + 3207 5852 20516 12 3 4 57 11 10 55 3 5 81 0 1 175 0 1 162 0 1 172 16 17 374 2 0 134 0 1 101 6 7 45 0 1 4 1 0 65 22 38 276 13 10 54 26 14 137 9 8 335 1 0 46 2 0 34 1 0 33 3 2 9 21 19 29 10 9 12 7 6 60 0 9 20 chain 101406 chrY 59373566 + 21697090 21698322 SVA_B 1603 + 0 1603 36419 21 0 2 13 1 25 362 0 232 80 1 3 96 8 44 38 8 4 30 0 78 422 0 1 152 chain 48871 chrY 59373566 + 21708134 21708743 L1PA6 6164 - 2 607 59829 8 5 0 133 5 8 6 3 0 261 0 1 188 chain 8540 chrY 59373566 + 21735547 21735721 MER21C 908 + 94 220 168063 40 1 0 18 50 0 26 0 1 16 0 2 23 chain 33981 chrY 59373566 + 21738440 21738899 L1PA7 6471 + 6010 6461 77642 288 11 12 102 9 0 49 chain 494855 chrY 59373566 + 21742394 21748497 L1PA5 6144 - 0 6144 7126 150 13 13 453 13 14 119 0 3 98 1 0 831 7 18 113 0 16 278 0 1 300 0 1 55 1 2 17 0 7 145 0 1 147 1 5 113 0 1 72 2 0 243 0 1 167 0 3 77 0 1 170 1 0 146 1 2 187 1 3 497 0 2 5 1 3 231 1 0 264 9 0 31 0 2 103 10 18 847 7 33 48 40 0 87 chain 18773 chrY 59373566 + 21770235 21770472 L1PA7 6471 - 2 241 130762 11 0 1 11 0 1 215 chain 43314 chrY 59373566 + 21774877 21775459 L1P1 4361 + 1 573 65025 18 1 0 73 4 0 268 0 1 89 17 11 16 1 2 69 1 0 25 chain 441539 chrY 59373566 + 21786351 21792153 L1PA6 6164 - 320 6164 9011 553 1 0 966 1 6 88 6 8 165 0 1 309 0 1 51 20 16 157 1 0 223 1 0 84 2 6 20 0 1 660 1 0 201 4 5 273 0 2 6 0 1 101 2 1 277 7 15 183 73 41 258 0 3 170 0 3 27 1 26 175 36 41 210 19 18 292 0 1 46 0 13 20 13 14 40 9 16 50 chain 271671 chrY 59373566 + 21793584 21796886 L1P1 4361 - 1055 4360 15102 75 13 8 52 7 6 194 9 0 37 0 1 217 0 10 124 1 2 35 0 1 654 0 1 659 0 1 76 0 3 1149 chain 279411 chrY 59373566 + 21802738 21806295 L1PA6 6164 - 8 3517 14668 80 0 17 335 1 0 164 2 1 40 8 1 67 0 2 114 1 2 276 6 7 202 0 2 251 8 0 10 0 9 83 3 2 125 0 4 515 70 0 145 1 3 168 2 1 47 0 1 201 0 2 109 1 0 161 0 1 361 chain 206348 chrY 59373566 + 21818431 21821039 HERVK9-int 4720 - 413 4370 18762 96 0 1 428 13 5 415 13 18 18 0 8 18 2 0 9 2 1 100 0 1 439 1 5 201 0 1 602 3 1342 224 5 6 19 chain 56380 chrY 59373566 + 21822861 21823656 L1PA7 6471 + 1428 2219 54914 335 1 0 4 0 1 5 7 12 93 5 7 233 0 1 5 21 13 66 4 0 16 chain 78785 chrY 59373566 + 21828558 21829428 L1PA3long 6157 - 723 1593 44155 870 chain 65662 chrY 59373566 + 21829430 21830153 L1PA3long 6157 + 5434 6157 50266 723 chain 98118 chrY 59373566 + 21839968 21841017 L1HS 6032 - 1 1050 37244 1049 chain 6361 chrY 59373566 + 21858328 21858550 L1MA7 2200 + 608 850 182301 15 1 0 23 1 0 4 51 54 60 49 68 18 chain 80054 chrY 59373566 + 21861366 21862333 LTR5_Hs 974 - 0 974 43564 140 8 15 471 1 0 60 1 2 286 chain 178473 chrY 59373566 + 21886242 21888603 L1PA7 6471 + 4099 6470 21121 203 2 1 301 0 8 388 2 0 207 1 15 294 0 1 5 4 0 102 8 10 68 3 2 128 9 12 334 6 7 106 16 7 10 5 6 29 0 1 4 1 0 12 12 8 70 0 1 31 chain 15982 chrY 59373566 + 21934582 21934761 L1PA5 6144 + 5960 6139 138400 179 chain 274512 chrY 59373566 + 21942297 21945578 L1PA5 6144 + 2584 5886 14951 98 0 1 75 0 3 166 0 1 248 2 0 67 0 1 113 1 5 147 0 1 145 0 7 17 1 2 55 0 1 300 0 1 1680 0 1 68 6 7 92 chain 27181 chrY 59373566 + 21949417 21949770 L1PA7 6471 + 5773 6130 95658 133 5 8 166 0 1 49 chain 23385 chrY 59373566 + 21949772 21950055 L1PA7 6471 + 6131 6420 113738 197 0 6 86 chain 394442 chrY 59373566 + 21954285 21959515 L1PA6 6164 - 3 5258 10305 7 2 0 176 6 5 26 4 3 4 0 1 87 3 19 361 0 1 55 1 7 54 0 4 460 3 1 236 6 7 230 0 2 39 0 2 8 2 0 501 5 6 669 0 1 109 0 5 161 10 3 247 0 1 334 1 2 572 6 8 81 0 1 5 1 0 52 3 4 272 12 8 68 1 0 350 chain 449927 chrY 59373566 + 21963514 21969479 L1PA6 6164 + 0 6162 8769 194 1 2 81 0 1 7 3 2 222 8 7 199 13 14 27 4 5 34 0 17 89 5 9 23 0 25 204 0 3 92 0 5 696 3 1 67 7 8 13 2 4 190 5 13 68 13 3 26 0 1 170 0 123 496 2 5 38 1 0 29 15 4 120 0 10 353 1 0 125 0 1 4 8 7 11 0 3 112 0 1 336 0 2 177 0 1 204 68 67 300 0 13 72 0 1 178 1 0 843 1 0 4 chain 33789 chrY 59373566 + 21971263 21971760 LTR10D 510 - 13 508 77956 32 1 0 145 1 2 4 1 0 50 0 2 26 7 6 39 2 0 77 17 13 22 8 12 65 chain 38101 chrY 59373566 + 21979359 21979885 LTR10D 510 - 0 510 71980 87 2 0 49 2 0 112 8 4 4 0 1 17 7 6 152 17 9 69 chain 6213 chrY 59373566 + 21990342 21990413 L1PA3long 6157 + 6084 6155 183478 71 chain 79116 chrY 59373566 + 21990654 21991737 MER11B 1079 - 0 1079 43992 24 1 2 68 0 2 89 0 1 28 9 10 89 6 0 171 39 38 23 10 11 264 3 0 259 chain 69656 chrY 59373566 + 21993710 21994690 LTR13 1007 - 0 994 48547 29 4 3 159 0 1 116 1 0 4 8 20 152 19 23 90 36 37 300 2 0 60 chain 307073 chrY 59373566 + 21996354 21999998 L1PA4 6152 - 368 4014 13129 489 0 1 298 0 1 722 4 0 114 0 1 64 0 1 144 1 0 10 0 1 455 2 1 111 0 4 202 9 5 527 1 2 311 0 2 180 chain 166621 chrY 59373566 + 22000000 22002122 L1P1 4361 - 2231 4360 22444 338 0 1 76 0 1 279 0 2 202 0 1 77 0 3 13 1 2 98 1 4 7 1 0 164 8 0 137 0 1 21 1 2 419 0 1 41 0 1 238 chain 517789 chrY 59373566 + 22011986 22017999 L1PA3long 6157 + 0 6149 5394 153 12 13 610 0 128 347 0 1 997 1 2 919 6 1 93 0 4 1004 0 1 368 1 0 464 0 1 200 0 1 51 0 3 646 0 1 141 chain 2557 chrY 59373566 + 22018753 22018801 L1PA14 3548 - 3400 3447 232393 22 9 8 17 chain 108314 chrY 59373566 + 22032312 22034942 HERVK22-int 3844 + 1695 3742 34615 200 3 4 381 4 12 8 6 0 152 16 28 35 0 2 5 20 18 54 45 60 24 9 24 342 1 0 54 4 4 16 1 0 6 1 0 18 1 0 36 1 0 20 2 0 7 6 9 25 4 0 8 1 0 34 55 42 10 8 4 7 4 0 12 1 0 7 66 48 19 812 232 71 0 1 8 chain 5274 chrY 59373566 + 22063190 22063376 L1M1 2793 + 2302 2476 192265 43 108 96 35 chain 8050 chrY 59373566 + 22065405 22065554 L1MA2 4263 + 3917 4058 170754 11 5 0 26 18 16 35 1 0 53 chain 31858 chrY 59373566 + 22079158 22080058 HERV30-int 1034 - 276 887 81085 21 58 4 47 118 39 15 59 7 33 2 0 6 61 23 36 21 6 29 1 0 5 1 9 27 1 0 21 2 1 75 12 0 39 14 9 46 31 1 62 1 0 36 7 1 13 chain 123951 chrY 59373566 + 22084516 22086166 LTR12C 1709 - 0 1709 29713 67 6 141 219 1 2 40 0 3 9 0 4 113 1 0 56 0 41 162 128 0 15 1 0 82 0 2 89 0 1 102 0 1 299 0 1 260 chain 7844 chrY 59373566 + 22085190 22085318 LTR12C 1709 - 697 816 138738 2 68 59 58 chain 5393 chrY 59373566 + 22085192 22085259 LTR12C 1709 - 533 598 173761 59 2 0 6 chain 17601 chrY 59373566 + 22090127 22090325 L1PA4 6152 - 814 1012 131532 198 chain 72730 chrY 59373566 + 22090325 22091136 L1PA4 6152 + 5342 6152 47151 48 1 0 762 chain 137976 chrY 59373566 + 22113294 22114931 L1PA4 6152 + 4510 6143 26484 119 1 0 251 8 9 495 1 0 166 4 1 592 chain 3017 chrY 59373566 + 22141384 22141438 MER51A 677 - 423 478 224679 15 7 8 32 chain 69487 chrY 59373566 + 22146193 22147057 L1PA7 6471 - 2 862 48613 8 5 0 52 0 1 718 0 1 68 2 0 7 0 1 4 chain 519163 chrY 59373566 + 22149771 22155886 L1PA4 6152 - 1 6144 5246 57 0 1 95 0 7 223 0 1 1415 0 4 68 15 18 483 0 1 93 1 3 891 0 2 48 0 1 337 0 1 89 1 0 132 0 2 1066 6 7 162 0 2 229 12 5 132 1 0 323 0 1 96 0 14 21 6 0 113 chain 3525 chrY 59373566 + 22168574 22168721 LTR12 884 - 519 757 214963 19 35 126 16 0 41 19 41 0 17 chain 245517 chrY 59373566 + 22169611 22172886 HERV9-int 5642 - 2441 5638 16482 106 0 2 322 1 2 653 13 14 284 0 1 235 7 4 314 0 1 122 126 38 304 4 3 80 6 0 27 0 1 30 7 5 41 4 19 299 0 1 199 2 1 89 chain 24212 chrY 59373566 + 22181743 22182012 L1PA3long 6157 + 4760 5031 109145 4 0 1 261 0 1 4 chain 21788 chrY 59373566 + 22182013 22182282 L1PA3long 6157 + 5031 5305 121070 112 3 4 141 0 4 13 chain 75329 chrY 59373566 + 22182283 22183129 L1PA3long 6157 + 5310 6157 45861 594 0 1 252 chain 529902 chrY 59373566 + 22192830 22198959 L1PA3long 6157 + 0 6157 4200 823 17 0 8 14 31 173 1 0 214 1 0 516 0 1 617 0 2 1862 0 1 889 0 1 166 0 4 133 0 21 695 chain 40101 chrY 59373566 + 22209811 22210293 L1P1 4361 + 3861 4341 69180 114 0 1 174 1 0 155 1 0 23 2 1 12 chain 68607 chrY 59373566 + 22214442 22215527 L1PA7 6471 - 25 976 48980 124 1 2 167 1 0 265 12 7 159 13 12 7 0 1 28 130 0 43 17 18 118 chain 7784 chrY 59373566 + 22216692 22216789 LTR12B 2670 - 152 244 22546 40 4 0 17 1 0 35 chain 42507 chrY 59373566 + 22216789 22217789 LTR12B 2670 - 0 583 19674 65 2 1 125 4 0 16 1 0 42 2 0 46 103 71 4 1 0 33 376 0 180 chain 7350 chrY 59373566 + 22217092 22217195 LTR12B 2670 - 511 614 21938 103 chain 26474 chrY 59373566 + 22217235 22217606 LTR12B 2670 - 731 1147 21938 21 2 0 15 34 32 34 0 58 10 11 7 19 3 1 98 3 0 121 chain 2728 chrY 59373566 + 22217273 22217307 LTR12B 2670 - 1186 1220 22546 34 chain 196926 chrY 59373566 + 22217789 22221252 LTR12B 2670 - 0 2663 19431 66 1 0 126 254 0 17 1 0 42 2 0 29 0 1 16 106 73 32 1 0 82 125 0 137 0 81 5 1 0 24 3 0 21 2 0 18 1 0 27 1 0 36 0 58 12 131 2 21 4 2 97 4 1 121 3 0 449 125 0 302 250 0 247 1 0 501 2 0 17 chain 16769 chrY 59373566 + 22218001 22218236 LTR12B 2670 - 1539 1774 21938 235 chain 1615 chrY 59373566 + 22218343 22218381 LTR12B 2670 - 894 928 19674 12 4 0 22 chain 5457 chrY 59373566 + 22218381 22218449 LTR12B 2670 - 2294 2362 22546 68 chain 1438 chrY 59373566 + 22218564 22218593 LTR12B 2670 - 268 297 20934 29 chain 6850 chrY 59373566 + 22218593 22218689 LTR12B 2670 - 1882 1978 21938 96 chain 9348 chrY 59373566 + 22218977 22219108 LTR12B 2670 - 2265 2396 21938 131 chain 5313 chrY 59373566 + 22219807 22219932 LTR12B 2670 - 1221 1346 19674 125 chain 2166 chrY 59373566 + 22220257 22220283 LTR12B 2670 - 2420 2446 34641 26 chain 3683 chrY 59373566 + 22220310 22220354 LTR12B 2670 - 1474 1518 38046 44 chain 5526 chrY 59373566 + 22220354 22220484 LTR12B 2670 - 1643 1773 19674 130 chain 4208 chrY 59373566 + 22221254 22221353 LTR12B 2670 - 2541 2640 19674 99 chain 13591 chrY 59373566 + 22221353 22221627 LTR12B 2670 - 2390 2662 20934 255 2 0 17 chain 6025 chrY 59373566 + 22221627 22222634 LTR12B 2670 - 1043 2047 24120 105 3 0 899 chain 5440 chrY 59373566 + 22222634 22222701 LTR12B 2670 - 1797 1864 47536 67 chain 3529 chrY 59373566 + 22225672 22225717 LTR12D 1347 + 1125 1170 214901 45 chain 3094 chrY 59373566 + 22227393 22227431 LTR12B 2670 + 219 257 46182 38 chain 14526 chrY 59373566 + 22227431 22228058 LTR12B 2670 + 9 500 20262 16 3 1 18 4 0 377 130 0 79 chain 10584 chrY 59373566 + 22227849 22227979 LTR12B 2670 + 670 795 46182 1 6 1 123 chain 124398 chrY 59373566 + 22228058 22233059 LTR12B 2670 + 2 1374 19846 23 2 0 226 379 0 273 1 0 43 1378 0 127 497 0 106 496 0 490 248 0 78 628 0 6 chain 9807 chrY 59373566 + 22229348 22229466 LTR12B 2670 + 157 275 83095 118 chain 3270 chrY 59373566 + 22229466 22229568 LTR12B 2670 + 524 626 44068 102 chain 4236 chrY 59373566 + 22229568 22229741 LTR12B 2670 + 1126 1299 36740 173 chain 382 chrY 59373566 + 22230160 22230194 LTR12B 2670 + 95 128 168489 29 1 0 4 chain 2438 chrY 59373566 + 22230317 22230356 LTR12B 2670 + 1126 1165 80112 39 chain 626 chrY 59373566 + 22230356 22230383 LTR12B 2670 + 1040 1067 20262 27 chain 1959 chrY 59373566 + 22230510 22230590 LTR12B 2670 + 1444 1524 36740 80 chain 3174 chrY 59373566 + 22230648 22230785 LTR12B 2670 + 1084 1221 20262 137 chain 1467 chrY 59373566 + 22230785 22230841 LTR12B 2670 + 472 528 38958 56 chain 2326 chrY 59373566 + 22230841 22230936 LTR12B 2670 + 1524 1619 36740 95 chain 19123 chrY 59373566 + 22231236 22231468 LTR12B 2670 + 799 1032 129764 41 0 1 191 chain 3515 chrY 59373566 + 22231480 22231522 LTR12B 2670 + 1044 1086 215150 42 chain 1830 chrY 59373566 + 22231530 22231609 LTR12B 2670 + 1221 1300 20262 79 chain 1436 chrY 59373566 + 22232425 22232487 LTR12B 2670 + 1912 1968 20262 6 2 0 21 3 0 24 1 0 5 chain 6734 chrY 59373566 + 22232487 22232730 LTR12B 2670 + 680 799 22407 76 124 0 43 chain 3174 chrY 59373566 + 22232754 22232827 LTR12B 2670 + 948 1021 76684 73 chain 8434 chrY 59373566 + 22232896 22233053 LTR12B 2670 + 87 244 120985 157 chain 196554 chrY 59373566 + 22233059 22237162 LTR12B 2670 + 2 2670 19462 23 256 0 286 247 0 149 127 0 65 1 0 42 376 0 601 130 0 354 128 0 123 3 0 97 2 0 23 254 0 11 0 58 36 1 0 30 1 0 18 2 0 17 3 0 28 1 0 5 0 81 218 1 0 33 1 0 4 101 69 46 2 0 44 1 0 15 4 0 122 3 2 68 chain 1690 chrY 59373566 + 22233082 22233133 LTR12B 2670 + 1644 1692 69935 1 3 0 47 chain 2767 chrY 59373566 + 22233133 22233246 LTR12B 2670 + 2192 2300 36740 77 1 0 17 4 0 14 chain 1542 chrY 59373566 + 22233624 22233686 LTR12B 2670 + 1679 1741 19846 62 chain 883 chrY 59373566 + 22233726 22233764 LTR12B 2670 + 1834 1872 43474 38 chain 1212 chrY 59373566 + 22233795 22233871 LTR12B 2670 + 1109 1185 79811 76 chain 2431 chrY 59373566 + 22234032 22234059 LTR12B 2670 + 1715 1742 172115 27 chain 2162 chrY 59373566 + 22234104 22234130 LTR12B 2670 + 1837 1863 225185 26 chain 4355 chrY 59373566 + 22234255 22234443 LTR12B 2670 + 2402 2462 20262 17 128 0 43 chain 1788 chrY 59373566 + 22234290 22234332 LTR12B 2670 + 977 1019 116291 42 chain 4224 chrY 59373566 + 22234338 22234400 LTR12B 2670 + 1024 1086 53129 62 chain 3474 chrY 59373566 + 22234443 22234494 LTR12B 2670 + 1129 1180 53129 51 chain 3408 chrY 59373566 + 22234494 22234631 LTR12B 2670 + 2049 2186 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LTR12B 2670 - 1371 1428 68638 57 chain 6584 chrY 59373566 + 22302868 22302952 LTR12B 2670 - 2062 2142 180585 64 4 0 16 chain 6148 chrY 59373566 + 22303208 22303330 LTR12B 2670 - 70 192 19673 122 chain 2193 chrY 59373566 + 22304068 22304157 LTR12B 2670 - 891 974 48525 15 4 0 21 4 2 45 chain 1965 chrY 59373566 + 22304157 22304196 LTR12B 2670 - 797 836 19673 39 chain 2323 chrY 59373566 + 22304208 22304273 LTR12B 2670 - 2268 2333 69236 65 chain 741 chrY 59373566 + 22304657 22304696 LTR12B 2670 - 797 836 25641 39 chain 7810 chrY 59373566 + 22304696 22304836 LTR12B 2670 - 2007 2147 34596 140 chain 9423 chrY 59373566 + 22304836 22305023 LTR12B 2670 - 1026 1211 19673 89 0 1 32 3 0 63 chain 82086 chrY 59373566 + 22305358 22306987 LTR12B 2670 - 1546 2668 19673 597 126 0 321 379 0 182 2 0 22 chain 8264 chrY 59373566 + 22305955 22306081 LTR12B 2670 - 1768 1894 30098 126 chain 24858 chrY 59373566 + 22306402 22306781 LTR12B 2670 - 2214 2339 30098 120 254 0 5 chain 3304 chrY 59373566 + 22306522 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22308242 LTR12B 2670 - 1519 1672 25873 153 chain 48893 chrY 59373566 + 22308242 22309544 LTR12B 2670 - 928 1522 25756 98 3 0 127 3 0 144 702 0 225 chain 16400 chrY 59373566 + 22308617 22308821 LTR12B 2670 - 2171 2375 69271 204 chain 4665 chrY 59373566 + 22308847 22308995 LTR12B 2670 - 2522 2668 29950 123 2 0 23 chain 7475 chrY 59373566 + 22308995 22309235 LTR12B 2670 - 1546 1714 64983 125 87 14 24 0 1 4 chain 1579 chrY 59373566 + 22309146 22309207 LTR12B 2670 - 1249 1310 146684 61 chain 1312 chrY 59373566 + 22309240 22309293 LTR12B 2670 - 1468 1521 33037 53 chain 1474 chrY 59373566 + 22309293 22309319 LTR12B 2670 - 2145 2171 29052 26 chain 51894 chrY 59373566 + 22309599 22310598 LTR12B 2670 - 0 958 19765 68 3 2 122 4 0 15 1 0 44 2 0 27 0 92 32 1 0 219 0 81 5 1 0 23 128 0 22 136 10 8 1 0 30 1 0 36 0 58 9 6 2 22 3 1 30 chain 2749 chrY 59373566 + 22310183 22310294 LTR12B 2670 - 2410 2521 33037 111 chain 1603 chrY 59373566 + 22310366 22310441 LTR12B 2670 - 1344 1419 120937 75 chain 198050 chrY 59373566 + 22310598 22315938 LTR12B 2670 - 0 2668 19352 64 1 0 128 4 0 17 1 0 88 101 69 4 1 0 32 3 9 210 0 81 4 1 0 25 3 0 21 252 0 18 1 0 27 1 0 36 4 58 15 4 0 21 253 1 97 3 0 122 503 0 39 253 0 368 1123 0 226 377 0 141 0 1 224 1 0 451 0 1 48 2 0 22 chain 5247 chrY 59373566 + 22310901 22311002 LTR12B 2670 - 1257 1358 19765 101 chain 2300 chrY 59373566 + 22311306 22311427 LTR12B 2670 - 2044 2164 25641 101 1 0 19 chain 8747 chrY 59373566 + 22311427 22311558 LTR12B 2670 - 1290 1421 44823 131 chain 4353 chrY 59373566 + 22311685 22311914 LTR12B 2670 - 2168 2397 25641 229 chain 26129 chrY 59373566 + 22312160 22312663 LTR12B 2670 - 1894 2271 19765 251 1 0 65 125 0 61 chain 6732 chrY 59373566 + 22312481 22312602 LTR12B 2670 - 1843 1961 60092 5 5 2 111 chain 7353 chrY 59373566 + 22312702 22312812 LTR12B 2670 - 2435 2545 38058 110 chain 6581 chrY 59373566 + 22312812 22312895 LTR12B 2670 - 1921 2004 80810 83 chain 726 chrY 59373566 + 22312899 22312955 LTR12B 2670 - 891 942 30475 15 4 0 19 1 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chrY 59373566 + 22317315 22317414 LTR12B 2670 - 2046 2145 62927 99 chain 4655 chrY 59373566 + 22317414 22317471 LTR12B 2670 - 1645 1702 65073 57 chain 2815 chrY 59373566 + 22317493 22317538 LTR12B 2670 - 1103 1148 72614 45 chain 4619 chrY 59373566 + 22317541 22317644 LTR12B 2670 - 1026 1129 48738 103 chain 9132 chrY 59373566 + 22317644 22317790 LTR12B 2670 - 1251 1397 72614 146 chain 682 chrY 59373566 + 22317790 22317817 LTR12B 2670 - 2146 2173 36622 27 chain 12635 chrY 59373566 + 22317817 22318019 LTR12B 2670 - 1424 1501 72614 8 125 0 69 chain 5939 chrY 59373566 + 22317845 22317950 LTR12B 2670 - 0 104 82613 64 7 6 34 chain 26796 chrY 59373566 + 22318170 22318794 LTR12B 2670 - 1026 1273 32746 111 125 0 11 3 0 26 249 0 99 chain 5606 chrY 59373566 + 22318281 22318406 LTR12B 2670 - 1384 1509 48738 125 chain 10943 chrY 59373566 + 22318446 22318690 LTR12B 2670 - 1549 1793 48738 244 chain 5221 chrY 59373566 + 22318794 22318916 LTR12B 2670 - 1026 1148 27201 122 chain 4552 chrY 59373566 + 22318916 22319022 LTR12B 2670 - 1395 1501 32746 106 chain 48739 chrY 59373566 + 22319047 22320182 LTR12B 2670 - 1522 1773 32746 151 884 0 100 chain 4296 chrY 59373566 + 22319198 22319286 LTR12B 2670 - 1923 2011 52053 88 chain 1376 chrY 59373566 + 22319298 22319387 LTR12B 2670 - 1147 1236 57271 89 chain 2632 chrY 59373566 + 22319387 22319556 LTR12B 2670 - 492 528 60363 13 133 0 23 chain 3253 chrY 59373566 + 22319421 22319463 LTR12B 2670 - 2265 2307 133132 42 chain 982 chrY 59373566 + 22319463 22319529 LTR12B 2670 - 2557 2623 83883 66 chain 7465 chrY 59373566 + 22319556 22319650 LTR12B 2670 - 1397 1491 131045 94 chain 1378 chrY 59373566 + 22319650 22319695 LTR12B 2670 - 703 744 124017 4 1 0 24 3 0 13 chain 5797 chrY 59373566 + 22319695 22319768 LTR12B 2670 - 1536 1609 131045 73 chain 4752 chrY 59373566 + 22319770 22319832 LTR12B 2670 - 1235 1297 132233 62 chain 11995 chrY 59373566 + 22319832 22320082 LTR12B 2670 - 1422 1548 40593 52 124 0 74 chain 1700 chrY 59373566 + 22319884 22319927 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22435407 LTR12B 2670 - 2146 2171 37137 25 chain 36364 chrY 59373566 + 22435492 22436153 LTR12B 2670 - 2381 2669 29486 46 123 0 88 0 1 129 251 0 24 chain 2259 chrY 59373566 + 22435538 22435568 LTR12B 2670 - 2302 2332 37137 30 chain 3108 chrY 59373566 + 22435569 22435661 LTR12B 2670 - 1461 1553 54053 92 chain 18283 chrY 59373566 + 22435905 22436129 LTR12B 2670 - 1174 1398 81907 224 chain 11101 chrY 59373566 + 22436153 22436289 LTR12B 2670 - 1422 1558 81907 136 chain 4415 chrY 59373566 + 22436308 22436360 LTR12B 2670 - 1202 1254 43528 52 chain 7981 chrY 59373566 + 22437034 22437128 LTR12B 2670 - 1928 2022 43528 94 chain 2945 chrY 59373566 + 22437128 22437184 LTR12B 2670 - 403 459 19560 56 chain 5774 chrY 59373566 + 22437184 22437252 LTR12B 2670 - 2078 2146 43528 68 chain 3752 chrY 59373566 + 22437657 22437746 LTR12B 2670 - 1303 1392 51229 89 chain 2545 chrY 59373566 + 22437746 22437850 LTR12B 2670 - 1642 1746 24490 104 chain 28243 chrY 59373566 + 22437850 22438387 LTR12B 2670 - 707 918 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chain 7281 chrY 59373566 + 22442600 22442831 LTR12B 2670 - 1257 1488 24395 231 chain 1261 chrY 59373566 + 22442924 22442964 LTR12B 2670 - 1581 1621 24395 40 chain 3910 chrY 59373566 + 22442964 22443013 LTR12B 2670 - 1124 1171 74712 23 3 0 14 0 1 9 chain 731 chrY 59373566 + 22443013 22443043 LTR12B 2670 - 752 782 58858 30 chain 9085 chrY 59373566 + 22443043 22443421 LTR12B 2670 - 0 248 53684 65 2 1 126 129 0 56 chain 2666 chrY 59373566 + 22443324 22443358 LTR12B 2670 - 366 399 230817 4 1 0 29 chain 3602 chrY 59373566 + 22443857 22443987 LTR12B 2670 - 398 528 91875 130 chain 1582 chrY 59373566 + 22443987 22444041 LTR12B 2670 - 905 958 25707 22 3 1 23 0 1 6 chain 194610 chrY 59373566 + 22444041 22449506 LTR12B 2670 - 0 2668 19617 68 3 2 122 4 0 15 623 0 44 2 0 27 0 92 33 1 0 218 0 81 5 1 0 24 3 0 21 250 0 15 1 0 30 1 0 39 265 69 22 3 1 97 1378 0 123 3 0 392 501 0 606 1 0 499 2 0 23 chain 14092 chrY 59373566 + 22444253 22444734 LTR12B 2670 - 1164 1398 25707 232 247 0 2 chain 1053 chrY 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22447356 LTR12B 2670 - 1353 1397 23150 44 chain 281 chrY 59373566 + 22447880 22447927 LTR12B 2670 - 752 798 187534 15 1 0 31 chain 9714 chrY 59373566 + 22448048 22448375 LTR12B 2670 - 1713 2040 23150 327 chain 150158 chrY 59373566 + 22449506 22453257 LTR12B 2670 - 552 2668 19682 69 1 82 4 1 0 23 3 0 20 2 0 19 1 0 28 1 0 39 122 55 12 6 2 22 128 1 97 253 0 122 3 0 149 250 0 517 1001 0 333 1 0 499 2 0 23 chain 3682 chrY 59373566 + 22449717 22449839 LTR12B 2670 - 1257 1379 19981 122 chain 3864 chrY 59373566 + 22449879 22450007 LTR12B 2670 - 1419 1547 19981 128 chain 7636 chrY 59373566 + 22450104 22450357 LTR12B 2670 - 1644 1897 19981 253 chain 7546 chrY 59373566 + 22450631 22450881 LTR12B 2670 - 2170 2420 19981 250 chain 6584 chrY 59373566 + 22451404 22451482 LTR12B 2670 - 2567 2645 180586 78 chain 43738 chrY 59373566 + 22451608 22452381 LTR12B 2670 - 2146 2667 25921 250 125 0 249 127 0 22 chain 20995 chrY 59373566 + 22453257 22453507 LTR12B 2670 - 2420 2668 64200 225 2 0 23 chain 4969 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22456317 22456463 LTR12B 2670 - 366 510 19868 4 1 0 33 1 0 107 chain 3291 chrY 59373566 + 22457106 22457231 LTR12B 2670 - 403 528 128274 125 chain 6049 chrY 59373566 + 22457231 22457478 LTR12B 2670 - 69 192 19913 87 124 0 36 chain 7960 chrY 59373566 + 22457478 22457573 LTR12B 2670 - 526 621 156288 95 chain 2406 chrY 59373566 + 22457573 22457603 LTR12B 2670 - 702 731 234171 5 1 0 24 chain 1093 chrY 59373566 + 22457851 22457897 LTR12B 2670 - 400 446 71399 46 chain 5153 chrY 59373566 + 22457897 22458101 LTR12B 2670 - 770 1025 19868 29 1 0 34 0 58 15 4 0 21 3 1 97 chain 1895 chrY 59373566 + 22458189 22458224 LTR12B 2670 - 366 400 125864 4 1 0 30 chain 192328 chrY 59373566 + 22458531 22466724 LTR12B 2670 - 0 2668 19833 69 253 2 121 4 0 15 126 0 44 2 0 46 100 69 4 1 0 32 1 0 1 251 0 156 745 0 62 0 81 5 1 0 24 501 0 21 2 0 18 126 0 28 2 1 37 122 55 12 6 2 23 253 1 97 3 0 122 3 0 38 745 0 242 123 0 175 0 1 167 372 0 375 1746 0 272 0 1 226 250 0 23 chain 8699 chrY 59373566 + 22458600 22458853 LTR12B 2670 - 1646 1899 19860 253 chain 4332 chrY 59373566 + 22458993 22459119 LTR12B 2670 - 2039 2164 19860 107 1 0 18 chain 808 chrY 59373566 + 22459211 22459243 LTR12B 2670 - 1257 1289 19868 32 chain 1664 chrY 59373566 + 22459263 22459311 LTR12B 2670 - 1063 1111 104673 48 chain 8630 chrY 59373566 + 22459350 22459601 LTR12B 2670 - 2271 2521 19860 142 1 0 108 chain 980 chrY 59373566 + 22459757 22459797 LTR12B 2670 - 1178 1218 19913 40 chain 8269 chrY 59373566 + 22459797 22460208 LTR12B 2670 - 140 297 20080 52 4 0 15 250 0 90 chain 1643 chrY 59373566 + 22459936 22460006 LTR12B 2670 - 366 434 24916 4 1 0 32 1 0 32 chain 9204 chrY 59373566 + 22460006 22460118 LTR12B 2670 - 1303 1415 130147 112 chain 3158 chrY 59373566 + 22460254 22460379 LTR12B 2670 - 1553 1678 19868 125 chain 12656 chrY 59373566 + 22460594 22461095 LTR12B 2670 - 1770 2147 19868 274 4 5 97 125 0 1 chain 4408 chrY 59373566 + 22460996 22461094 LTR12B 2670 - 1299 1397 33991 98 chain 3183 chrY 59373566 + 22461136 22461262 LTR12B 2670 - 2188 2314 19868 126 chain 3082 chrY 59373566 + 22461329 22461451 LTR12B 2670 - 2381 2503 19868 122 chain 6196 chrY 59373566 + 22461492 22461745 LTR12B 2670 - 1670 1923 19913 253 chain 3869 chrY 59373566 + 22462008 22462094 LTR12B 2670 - 2310 2396 33991 86 chain 2551 chrY 59373566 + 22462117 22462218 LTR12B 2670 - 2544 2645 19868 101 chain 869 chrY 59373566 + 22462280 22462328 LTR12B 2670 - 249 297 48878 48 chain 784 chrY 59373566 + 22462342 22462374 LTR12B 2670 - 2270 2302 19913 32 chain 1408 chrY 59373566 + 22462467 22462537 LTR12B 2670 - 731 798 20080 21 2 0 18 1 0 28 chain 3423 chrY 59373566 + 22462537 22462716 LTR12B 2670 - 2217 2397 58898 75 5 6 99 chain 704 chrY 59373566 + 22463088 22463118 LTR12B 2670 - 1026 1056 24916 30 chain 1361 chrY 59373566 + 22463528 22463586 LTR12B 2670 - 1215 1273 24916 58 chain 2314 chrY 59373566 + 22463586 22463701 LTR12B 2670 - 1148 1263 20080 115 chain 4742 chrY 59373566 + 22464456 22464704 LTR12B 2670 - 2397 2645 58898 248 chain 1756 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LTR12B 2670 - 905 1025 24871 22 3 1 62 125 0 35 chain 3969 chrY 59373566 + 22475012 22475137 LTR12B 2670 - 1484 1609 27902 125 chain 11590 chrY 59373566 + 22475172 22475537 LTR12B 2670 - 1644 2009 27902 365 chain 8847 chrY 59373566 + 22475552 22475799 LTR12B 2670 - 192 403 20019 15 1 0 42 2 0 48 101 69 4 1 0 33 chain 2283 chrY 59373566 + 22475660 22475761 LTR12B 2670 - 1632 1733 22399 101 chain 3869 chrY 59373566 + 22475910 22476018 LTR12B 2670 - 513 621 20019 108 chain 1185 chrY 59373566 + 22476299 22476324 LTR12B 2670 - 2645 2670 65883 25 chain 7662 chrY 59373566 + 22476331 22476417 LTR12B 2670 - 2555 2641 170945 86 chain 660 chrY 59373566 + 22476417 22476448 LTR12B 2670 - 2391 2422 42320 31 chain 117264 chrY 59373566 + 22476477 22479670 LTR12B 2670 - 0 2146 19880 68 3 2 122 4 0 15 751 0 41 3 1 48 226 69 4 1 0 33 126 0 144 0 1 73 0 81 5 1 0 24 3 0 21 2 0 18 126 0 26 1 0 40 15 69 22 3 1 91 9 6 125 3 0 996 chain 2168 chrY 59373566 + 22476689 22476796 LTR12B 2670 - 1289 1396 24871 107 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chrY 59373566 + 22486565 22486601 LTR12B 2670 - 2535 2571 32434 36 chain 855 chrY 59373566 + 22486616 22486652 LTR12B 2670 - 252 288 60033 36 chain 195275 chrY 59373566 + 22486731 22490826 LTR12B 2670 - 0 2669 19562 68 3 2 122 4 0 15 1 0 43 2 0 47 101 69 4 1 0 33 751 0 218 0 81 5 251 0 24 3 0 21 2 0 18 1 0 26 1 0 40 122 55 15 4 0 21 3 1 97 253 0 123 3 0 998 1 0 120 125 0 379 2 0 24 chain 4888 chrY 59373566 + 22487036 22487137 LTR12B 2670 - 1013 1111 19856 13 3 0 85 chain 5640 chrY 59373566 + 22487175 22487392 LTR12B 2670 - 1771 1988 26189 217 chain 1714 chrY 59373566 + 22487392 22487425 LTR12B 2670 - 370 403 21839 33 chain 24198 chrY 59373566 + 22487426 22487926 LTR12B 2670 - 1147 1647 19856 500 chain 12147 chrY 59373566 + 22488149 22488400 LTR12B 2670 - 1870 2121 19856 251 chain 5904 chrY 59373566 + 22488536 22488658 LTR12B 2670 - 2256 2378 19856 122 chain 7405 chrY 59373566 + 22488798 22488951 LTR12B 2670 - 2518 2669 19856 127 2 0 24 chain 5194 chrY 59373566 + 22488951 22489051 LTR12B 2670 - 1172 1272 21839 100 chain 7898 chrY 59373566 + 22490296 22490391 LTR12B 2670 - 2142 2239 39419 4 1 0 85 0 3 5 chain 8659 chrY 59373566 + 22490867 22490981 LTR12B 2670 - 1463 1577 36940 114 chain 76514 chrY 59373566 + 22490981 22492606 LTR12B 2670 - 0 583 19797 68 3 2 122 4 0 15 1 0 44 2 0 46 1106 73 32 2 1 180 chain 3308 chrY 59373566 + 22491286 22491363 LTR12B 2670 - 179 251 19874 13 4 0 15 1 0 44 chain 26438 chrY 59373566 + 22491363 22491799 LTR12B 2670 - 2208 2644 25745 436 chain 8196 chrY 59373566 + 22491799 22491920 LTR12B 2670 - 2519 2640 27004 121 chain 36052 chrY 59373566 + 22491920 22492352 LTR12B 2670 - 2016 2447 34543 130 1 0 301 chain 1580 chrY 59373566 + 22492364 22492392 LTR12B 2670 - 250 278 120648 28 chain 59088 chrY 59373566 + 22492606 22494238 LTR12B 2670 - 0 591 19743 69 375 0 123 4 0 15 1 0 44 127 0 46 601 69 4 1 0 33 1 0 188 chain 17516 chrY 59373566 + 22492675 22493047 LTR12B 2670 - 732 1025 19797 1 3 0 19 2 0 18 1 0 26 126 0 28 26 81 22 3 1 97 chain 5412 chrY 59373566 + 22492745 22492871 LTR12B 2670 - 472 598 19874 126 chain 5980 chrY 59373566 + 22493237 22493364 LTR12B 2670 - 1209 1336 19797 127 chain 28299 chrY 59373566 + 22493410 22494011 LTR12B 2670 - 1382 1858 19797 171 125 0 305 chain 5370 chrY 59373566 + 22493581 22493706 LTR12B 2670 - 1178 1303 19874 125 chain 194308 chrY 59373566 + 22494238 22499573 LTR12B 2670 - 8 2668 19647 182 129 0 17 1 0 44 2 0 46 101 69 4 1 0 33 1 0 215 3 84 5 1 0 24 3 0 21 876 0 15 1 0 31 126 0 35 0 58 14 4 0 23 377 0 97 128 0 122 754 0 236 250 0 763 126 0 499 2 0 23 chain 5511 chrY 59373566 + 22494420 22494547 LTR12B 2670 - 1024 1148 21989 3 4 1 120 chain 4756 chrY 59373566 + 22494659 22494760 LTR12B 2670 - 2256 2357 19797 101 chain 31717 chrY 59373566 + 22495071 22495947 LTR12B 2670 - 1047 1421 19743 101 3 0 251 499 0 22 chain 6315 chrY 59373566 + 22495426 22495573 LTR12B 2670 - 2523 2668 19874 122 2 0 23 chain 8234 chrY 59373566 + 22495573 22495726 LTR12B 2670 - 2420 2573 24725 153 chain 8322 chrY 59373566 + 22495798 22495925 LTR12B 2670 - 1147 1274 29545 127 chain 4562 chrY 59373566 + 22495994 22496120 LTR12B 2670 - 1468 1594 19743 126 chain 13650 chrY 59373566 + 22496196 22496573 LTR12B 2670 - 1670 1797 19743 126 250 0 1 chain 9451 chrY 59373566 + 22496341 22496572 LTR12B 2670 - 1190 1296 24826 4 125 0 102 chain 4781 chrY 59373566 + 22496345 22496470 LTR12B 2670 - 1319 1444 26251 125 chain 4634 chrY 59373566 + 22496670 22496798 LTR12B 2670 - 1894 2022 19743 128 chain 27299 chrY 59373566 + 22496920 22497674 LTR12B 2670 - 2144 2396 19743 2 1 0 24 501 0 226 chain 5810 chrY 59373566 + 22496947 22497089 LTR12B 2670 - 1671 1813 24826 142 chain 4600 chrY 59373566 + 22497092 22497198 LTR12B 2670 - 2564 2668 21989 81 2 0 23 chain 9561 chrY 59373566 + 22497198 22497448 LTR12B 2670 - 2046 2295 26251 100 1 0 149 chain 1376 chrY 59373566 + 22497910 22497948 LTR12B 2670 - 2632 2668 19743 13 2 0 23 chain 2864 chrY 59373566 + 22498090 22498160 LTR12B 2670 - 1813 1883 24826 70 chain 2930 chrY 59373566 + 22498948 22499049 LTR12B 2670 - 1671 1772 25924 101 chain 5746 chrY 59373566 + 22499604 22499674 LTR12B 2670 - 1577 1647 80158 70 chain 5031 chrY 59373566 + 22499674 22499854 LTR12B 2670 - 1147 1327 43472 180 chain 8486 chrY 59373566 + 22499854 22499996 LTR12B 2670 - 0 141 19835 68 3 2 71 chain 2563 chrY 59373566 + 22500010 22500049 LTR12B 2670 - 155 197 162291 37 0 3 2 chain 2220 chrY 59373566 + 22500049 22500104 LTR12B 2670 - 403 458 126343 55 chain 197483 chrY 59373566 + 22500104 22503947 LTR12B 2670 - 0 2668 19389 69 128 2 121 4 0 15 1 0 43 2 0 47 226 69 4 1 0 33 1 0 218 0 81 5 1 0 23 3 0 22 2 0 15 1 0 29 1 0 37 0 58 14 129 0 23 627 0 97 128 0 122 2 0 999 1 0 499 127 0 23 chain 7470 chrY 59373566 + 22500176 22500301 LTR12B 2670 - 192 405 19835 15 1 0 42 2 0 29 0 92 33 1 0 2 chain 7470 chrY 59373566 + 22500534 22500659 LTR12B 2670 - 718 836 19835 12 3 0 20 5 3 16 1 0 31 4 3 33 chain 7476 chrY 59373566 + 22500659 22500760 LTR12B 2670 - 389 489 118350 14 1 0 86 chain 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LTR12B 2670 - 1772 2334 30572 374 1 0 188 chain 37464 chrY 59373566 + 22508354 22509034 LTR12B 2670 - 0 297 19355 69 253 2 121 129 0 15 1 0 43 2 0 47 chain 21099 chrY 59373566 + 22508425 22508676 LTR12B 2670 - 1148 1399 29125 251 chain 3440 chrY 59373566 + 22508797 22508926 LTR12B 2670 - 1270 1399 19510 129 chain 1200 chrY 59373566 + 22509034 22509079 LTR12B 2670 - 1507 1552 19510 45 chain 7924 chrY 59373566 + 22509079 22509229 LTR12B 2670 - 0 124 19372 20 25 0 48 3 2 54 chain 198460 chrY 59373566 + 22509229 22512935 LTR12B 2670 - 0 2654 19323 69 126 0 123 4 0 15 501 0 44 2 0 46 476 69 4 1 0 33 1 0 215 4 85 4 1 0 24 128 0 21 2 0 18 1 0 27 1 0 36 0 58 14 4 0 22 3 1 98 3 0 122 3 0 998 1 0 218 1 0 282 2 0 8 chain 6887 chrY 59373566 + 22509299 22509424 LTR12B 2670 - 403 528 19355 125 chain 1840 chrY 59373566 + 22509566 22509635 LTR12B 2670 - 2039 2108 19510 69 chain 2008 chrY 59373566 + 22509635 22509673 LTR12B 2670 - 366 403 19372 4 1 0 33 chain 8099 chrY 59373566 + 22509674 22509821 LTR12B 2670 - 730 927 19355 22 2 0 18 1 0 28 2 1 34 0 58 12 6 2 22 chain 6560 chrY 59373566 + 22509821 22510067 LTR12B 2670 - 2293 2539 19510 246 chain 26225 chrY 59373566 + 22510159 22510635 LTR12B 2670 - 1013 1358 19355 12 128 0 123 3 0 210 chain 5072 chrY 59373566 + 22510171 22510267 LTR12B 2670 - 525 621 19372 96 chain 2676 chrY 59373566 + 22510267 22510299 LTR12B 2670 - 1990 2022 57296 32 chain 7052 chrY 59373566 + 22510922 22511050 LTR12B 2670 - 1645 1773 19355 128 chain 54144 chrY 59373566 + 22517977 22518757 L1PA8 5853 + 5076 5853 56269 486 1 0 45 3 1 55 13 38 43 2 1 15 1 0 39 4 6 16 30 5 27 chain 547531 chrY 59373566 + 22529886 22535904 L1PA2 6032 + 9 6031 1763 324 0 1 636 0 1 991 0 1 3732 0 1 335 chain 530041 chrY 59373566 + 22542311 22548583 L1PA3long 6157 - 0 6146 4184 1521 0 1 172 0 3 104 142 0 926 0 1 146 0 1 98 0 1 864 0 3 457 0 1 4 0 4 18 5 4 4 0 1 1017 0 1 794 chain 5162 chrY 59373566 + 22544192 22544249 L1PA3long 6157 - 1739 1796 193430 57 chain 53806 chrY 59373566 + 22564419 22565092 L1PA6 6164 - 3 681 56474 52 3 6 35 0 1 487 0 1 96 chain 3232 chrY 59373566 + 22588999 22589039 LTR25 836 - 0 40 220380 40 chain 7875 chrY 59373566 + 22590678 22590765 L1PA4 6152 - 907 994 171837 87 chain 80977 chrY 59373566 + 22590766 22591686 L1PA4 6152 + 5229 6151 43204 65 0 1 224 1 2 630 chain 29402 chrY 59373566 + 22592236 22592618 L1P1 4361 - 40 421 87056 16 1 0 138 12 8 13 0 3 104 0 1 98 chain 117542 chrY 59373566 + 22592705 22594085 L1PA5 6144 + 4742 6132 31948 36 0 1 437 0 1 856 0 8 51 chain 38917 chrY 59373566 + 22594088 22594563 L1PA5 6144 + 5467 5941 70844 5 2 0 374 0 1 94 chain 10679 chrY 59373566 + 22594602 22594733 L1PA5 6144 + 6001 6132 157488 131 chain 43179 chrY 59373566 + 22611084 22611597 MER9a1 513 - 0 513 65198 129 0 1 289 1 0 94 chain 7520 chrY 59373566 + 22617418 22617506 L1PA5 6144 + 6010 6098 174039 88 chain 3312 chrY 59373566 + 22617510 22617550 L1PA5 6144 + 6103 6143 218738 40 chain 497961 chrY 59373566 + 22619183 22625286 L1PA5 6144 - 13 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0 3 178 1 0 1027 0 1 348 1 0 145 chain 9062 chrY 59373566 + 22677076 22677183 L1PA2 6032 + 5923 6028 165246 96 2 0 9 chain 501273 chrY 59373566 + 22690087 22696224 L1PA4 6152 + 1 6152 6767 289 6 8 158 5 13 240 9 1 26 1 0 911 1 7 74 1 0 688 0 1 103 1 2 105 14 10 64 20 20 214 5 0 229 0 2 582 1 0 7 1 2 509 0 1 80 0 4 147 0 1 136 2 1 207 3 5 809 0 1 483 0 5 6 chain 32687 chrY 59373566 + 22696229 22696614 L1PA5 6144 + 5761 6144 79711 375 2 0 8 chain 122003 chrY 59373566 + 22712910 22715157 SVA_A 1864 + 21 1864 30386 26 19 0 137 0 1 141 1 0 162 37 0 101 37 0 20 40 0 73 11 45 13 496 193 82 13 11 48 1 4 67 1 0 26 2 0 29 12 10 31 24 21 21 1 0 21 1 7 553 chain 2998 chrY 59373566 + 22713396 22713433 SVA_A 1864 + 604 641 136835 37 chain 2352 chrY 59373566 + 22713598 22713631 SVA_A 1864 + 984 1017 164578 33 chain 6472 chrY 59373566 + 22713805 22714155 SVA_F 1814 + 604 848 181459 15 10 11 31 229 2 43 1 121 21 chain 20023 chrY 59373566 + 22739434 22739685 AluY 311 + 0 280 127068 42 0 1 90 1 0 13 0 29 105 chain 41596 chrY 59373566 + 22756326 22756780 L1PA3long 6157 - 901 1355 66803 454 chain 77855 chrY 59373566 + 22756780 22757664 L1PA3long 6157 + 5262 6152 44587 48 0 4 509 0 1 183 1 2 143 chain 139501 chrY 59373566 + 22765364 22768355 L1PA6 6164 + 4312 6162 26219 47 0 3 6 0 4 277 3 0 264 0 1 144 1151 0 246 0 4 7 9 8 310 15 3 18 0 1 98 17 27 51 0 1 161 12 13 59 0 1 96 chain 3126 chrY 59373566 + 22766253 22766291 L1PA4 6152 + 5860 5898 222416 38 chain 22389 chrY 59373566 + 22766293 22766545 L1PA4 6152 + 5899 6151 118540 252 chain 6667 chrY 59373566 + 22771365 22771457 L1PA7 6471 + 6380 6469 179929 74 3 0 15 chain 482835 chrY 59373566 + 22776747 22782820 L1PA5 6144 - 2 6144 7629 7 4 0 129 7 0 8 5 13 607 1 2 509 0 3 225 0 1 10 1 0 180 0 3 138 0 1 76 1 0 4 11 14 362 0 1 315 6 8 278 0 1 77 0 1 17 0 2 49 0 1 196 0 1 129 1 0 244 0 4 18 1 0 74 9 12 107 13 5 115 0 2 271 1 5 72 0 5 113 8 12 48 0 2 210 0 1 257 0 1 25 9 0 412 4 11 124 0 2 239 0 11 204 3 15 11 8 22 120 chain 101849 chrY 59373566 + 22790033 22791181 L1PA3long 6157 + 4994 6147 36299 311 0 3 187 1 3 649 chain 29860 chrY 59373566 + 22816078 22816395 AluYb9 318 + 0 317 85241 317 chain 452138 chrY 59373566 + 22836411 22842458 L1PA6 6164 + 0 6156 8691 10 0 2 197 15 29 53 8 17 64 39 40 94 0 3 143 0 1 355 2 1 5 0 1 73 12 26 180 0 9 28 0 1 131 0 4 127 3 5 121 20 22 84 1 3 384 0 2 58 0 2 51 4 0 631 0 1 4 9 8 219 0 2 163 0 1 99 1 0 56 13 12 348 14 15 83 0 1 674 1 0 35 0 1 83 0 1 37 0 2 8 2 0 505 9 11 198 23 25 238 1 2 44 0 1 59 2 31 12 0 2 14 0 4 200 chain 35624 chrY 59373566 + 22845774 22846278 MER9a3 513 - 0 513 75378 57 0 4 30 1 0 111 0 4 27 27 26 143 3 4 87 0 2 18 chain 457262 chrY 59373566 + 22851371 22857925 L1PA6 6164 - 2 6164 8502 8 2 0 31 0 1 104 16 16 625 8 9 23 558 0 19 4 11 62 0 22 16 0 1 114 0 1 4 0 5 8 6 0 42 1 0 4 0 1 271 0 1 84 0 1 235 0 1 79 1 5 154 6 21 214 0 1 272 1 0 446 0 104 195 0 1 273 4 5 346 0 1 16 0 1 33 2 0 7 1 3 51 0 2 10 0 1 470 3 2 34 9 15 229 0 9 40 0 4 934 6 5 121 21 0 93 11 10 125 0 1 54 9 15 26 0 1 13 chain 50222 chrY 59373566 + 22852202 22852744 L1HS 6032 - 0 544 58849 15 0 3 4 1 0 522 chain 11774 chrY 59373566 + 22881880 22882020 L1PA6 6164 + 2754 2895 153157 106 0 1 34 chain 111893 chrY 59373566 + 22882024 22883436 L1PA6 6164 + 2900 4314 33695 289 0 1 270 4 3 239 6 7 204 0 1 400 chain 119044 chrY 59373566 + 22883442 22884938 L1PA6 6164 + 4652 6156 31391 133 0 1 239 7 4 168 1 0 151 0 1 49 1 0 50 0 9 390 0 1 154 16 17 137 chain 22503 chrY 59373566 + 22887937 22888246 L1PA7 6471 + 6152 6468 118015 137 22 27 140 0 2 10 chain 12334 chrY 59373566 + 22904798 22904947 MER4A1 472 - 321 472 150880 50 0 2 99 chain 31341 chrY 59373566 + 22951689 22952194 HERV1_LTRd 520 - 9 513 81912 42 2 1 14 27 29 63 2 4 17 1 0 71 0 2 127 4 5 72 1 13 9 18 0 35 chain 165226 chrY 59373566 + 22954456 22956496 L1PA4 6152 - 0 2012 22624 6 1 0 107 0 1 38 8 8 471 0 3 103 33 0 102 1 0 951 1 5 94 2 0 29 0 1 93 chain 192571 chrY 59373566 + 22964071 22967802 HERVK22-int 3844 + 685 3844 19808 388 1 0 14 1 0 93 16 15 61 0 2 112 0 8 8 9 1 250 1 0 109 8 72 261 0 3 249 0 4 10 2 1 128 6 5 4 0 1 33 1 0 32 7 12 14 0 6 35 20 21 15 0 11 174 1 0 202 6 5 74 27 24 37 1 0 17 5 3 38 15 10 45 158 118 24 3 0 3 1 0 28 1 0 5 805 192 49 0 5 34 1 0 33 0 7 39 2 0 15 chain 27499 chrY 59373566 + 22970002 22970309 AluYf4 310 + 0 307 94657 307 chain 117750 chrY 59373566 + 22971503 22972811 L1PA3long 6157 + 4840 6155 31878 470 0 4 590 0 3 248 chain 499181 chrY 59373566 + 22982273 22988903 L1PA4 6152 - 1 6149 6884 244 4 5 4 1 0 211 1 0 257 2 0 186 16 16 207 0 1 143 619 1 515 0 2 268 0 1 307 1 2 13 0 2 473 3 4 137 0 1 157 0 1 552 0 1 127 1 0 250 0 1 112 0 1 790 5 8 58 0 1 192 1 129 32 4 5 27 7 0 131 1 0 318 0 1 102 0 1 151 chain 50225 chrY 59373566 + 22983549 22984168 L1P1 4361 - 2666 3328 58440 22 0 2 162 0 9 32 0 1 330 0 1 65 0 30 8 chain 14015 chrY 59373566 + 22989039 22989194 L1PA3long 6157 + 5854 6009 144531 155 chain 13171 chrY 59373566 + 22989195 22989341 L1PA3long 6157 + 6011 6157 147580 146 chain 81140 chrY 59373566 + 23003975 23004981 L1PA7 6471 - 3 1016 43116 155 4 5 496 0 3 189 1 4 161 chain 26958 chrY 59373566 + 23010947 23011284 L1PA4 6152 - 9 347 96413 152 15 16 170 chain 349787 chrY 59373566 + 23013645 23017819 L1PA4 6152 - 6 4190 11612 133 7 0 115 1 2 61 0 1 345 0 3 113 0 1 77 1 0 4 0 2 86 0 1 128 1 0 722 0 4 228 10 11 227 0 1 107 7 8 838 0 1 168 0 1 493 1 2 301 chain 184261 chrY 59373566 + 23017819 23020069 L1P1 4361 - 2094 4360 20564 2070 0 16 180 chain 196784 chrY 59373566 + 23026534 23028892 L1PA4 6152 - 9 2387 19442 139 0 1 8 1 0 96 2 1 314 3 5 914 1 0 86 0 14 120 3 4 86 0 4 283 0 1 302 chain 102498 chrY 59373566 + 23028892 23030183 L1PA4 6152 - 4850 6150 36069 261 0 1 90 0 4 689 2 6 249 chain 28184 chrY 59373566 + 23034293 23034589 AluYa5 310 - 14 310 92363 296 chain 54095 chrY 59373566 + 23035846 23037041 L1PA8 5853 + 4940 5853 56296 55 1 4 6 0 1 4 2 0 18 0 9 5 0 2 50 4 3 70 6 12 169 9 10 18 12 18 130 297 0 11 0 1 28 1 0 5 4 0 11 0 2 26 4 3 49 50 45 35 2 1 11 10 9 92 chain 20977 chrY 59373566 + 23036419 23036702 AluSp 311 + 23 306 124003 25 9 10 66 1 0 182 chain 30971 chrY 59373566 + 23037849 23038209 L1P1 4361 - 68 432 82562 143 1 0 32 0 5 184 chain 95686 chrY 59373566 + 23038209 23039281 L1PA3long 6157 + 5078 6152 37901 604 0 2 468 chain 120051 chrY 59373566 + 23047359 23049046 L1PA6 6164 + 3174 4997 31041 4 1 0 8 1 0 4 0 1 240 7 30 27 24 1 40 0 1 179 34 33 97 19 15 7 0 4 39 1 3 22 0 1 249 1 3 94 0 1 33 3 5 125 0 115 71 0 14 357 chain 30983 chrY 59373566 + 23049046 23049416 L1PA6 6164 + 5426 5796 82404 370 chain 18273 chrY 59373566 + 23050113 23050333 L1PA4 6152 - 2691 2914 132144 84 0 1 108 0 2 28 chain 196567 chrY 59373566 + 23050334 23052706 L1PA4 6152 + 3456 6152 19459 155 1 0 11 0 1 297 0 1 423 0 4 82 0 1 305 9 316 246 1 0 6 0 4 383 0 2 125 0 1 322 0 5 6 chain 4708 chrY 59373566 + 23061946 23062006 HERVH-int 3825 + 3764 3825 198416 42 0 1 18 chain 266651 chrY 59373566 + 23076189 23079226 L1PA2 6032 - 0 3035 15354 144 1 2 1039 5 0 208 0 1 878 0 1 762 chain 494739 chrY 59373566 + 23081808 23087894 L1PA4 6152 - 5 6152 7131 141 5 12 670 11 0 30 0 1 144 6 1 520 0 1 265 7 11 36 2 3 211 0 81 134 0 1 22 7 0 84 0 1 95 0 1 151 10 16 306 1 0 44 12 1 213 0 1 545 0 6 442 0 1 720 0 1 394 17 0 19 1 2 241 1 0 579 chain 447694 chrY 59373566 + 23091367 23097391 L1PA6 6164 + 0 6156 8824 18 0 1 165 10 12 302 47 46 83 8 7 15 0 111 28 34 0 169 6 1 112 8 9 177 0 1 197 6 15 102 0 2 132 0 1 63 0 1 312 7 29 343 1 5 16 2 3 319 0 2 168 5 6 12 1 2 193 1 2 33 0 1 7 16 19 58 0 1 397 2 0 8 0 2 111 0 1 94 0 1 46 0 1 7 1 0 609 0 1 313 2 3 609 8 11 488 2 9 11 7 0 133 chain 504094 chrY 59373566 + 23099688 23105806 L1PA4 6152 - 0 6137 6593 779 0 1 7 0 1 1010 1 5 436 51 52 610 0 1 84 0 1 777 0 4 710 6 8 50 1 3 544 0 1 329 0 1 8 1 0 340 1 2 373 chain 533429 chrY 59373566 + 23106019 23112049 L1PA2 6032 - 2 6032 3785 284 0 2 450 0 1 290 0 2 6 3 1 764 0 4 1183 5 1 1588 0 1 985 0 1 211 5 0 256 chain 80088 chrY 59373566 + 23120577 23121434 L1HS 6032 - 0 857 43544 857 chain 36070 chrY 59373566 + 23151196 23151687 LTR15 485 + 0 485 74801 242 2 1 101 9 2 32 0 2 105 chain 530750 chrY 59373566 + 23167802 23173823 L1PA2 6032 - 3 6030 4113 1950 0 2 912 0 1 503 0 4 95 0 1 1649 1 0 656 6 5 249 chain 4041 chrY 59373566 + 23184676 23184829 LTR12D 1347 - 695 780 206778 44 92 24 17 chain 218881 chrY 59373566 + 23187425 23190459 HERV9-int 5642 - 2632 5642 17953 41 9 10 379 12 11 128 9 10 289 1 2 374 5 16 153 19 18 427 72 45 303 17 16 181 29 22 223 41 39 26 5 8 6 1 0 138 1 0 145 chain 53943 chrY 59373566 + 23191924 23192521 L1PA2 6032 - 844 1441 56100 597 chain 75091 chrY 59373566 + 23192521 23193367 L1PA2 6032 + 5186 6032 45972 680 5 0 7 0 5 154 chain 30077 chrY 59373566 + 23197812 23198304 LTR7 482 - 7 482 84566 35 41 43 136 4 36 45 51 0 180 chain 25797 chrY 59373566 + 23199537 23199943 LTR7 482 + 0 482 100885 68 9 47 68 3 4 37 3 4 21 6 0 12 3 34 17 5 15 38 1 2 115 chain 31065 chrY 59373566 + 23206644 23207131 LTR7 482 - 12 482 82409 37 13 15 155 8 39 82 50 0 142 chain 516167 chrY 59373566 + 23209641 23215677 L1PA3long 6157 - 1 6157 5561 805 0 1 23 1 2 157 14 0 1221 0 1 59 2 1 619 1 0 4 0 1 289 8 7 261 0 5 1654 1 0 142 8 138 5 2 0 595 12 13 153 chain 520229 chrY 59373566 + 23225627 23231644 L1PA2 6032 + 0 6031 5131 251 6 5 16 0 1 437 0 1 201 1 0 1649 0 1 98 0 4 500 0 1 322 1 2 330 0 1 936 0 1 872 0 3 384 0 2 13 chain 10600 chrY 59373566 + 23245396 23245611 THE1C 375 - 48 260 157827 83 74 71 58 chain 91626 chrY 59373566 + 23260564 23261677 L1PA4 6152 - 12 1123 39082 33 35 29 72 7 9 612 0 1 340 0 1 14 chain 487418 chrY 59373566 + 23285436 23291528 L1PA5 6144 - 13 6141 7460 596 0 1 30 0 1 200 0 6 18 0 4 365 1 0 40 1 2 808 1 2 357 0 1 188 0 1 231 0 1 120 0 1 802 0 1 34 9 10 6 0 1 203 7 10 164 2 1 281 17 18 70 6 21 300 0 1 647 22 0 35 0 1 71 9 13 333 5 19 113 chain 373211 chrY 59373566 + 23317734 23322002 L1PA3long 6157 - 5 4286 10981 146 1 2 955 1 0 401 0 1 631 0 11 387 2 1 254 0 1 307 0 1 1183 chain 53865 chrY 59373566 + 23332044 23332659 L1PA3long 6157 - 0 621 56448 11 0 6 604 chain 115865 chrY 59373566 + 23332659 23334090 L1P1 4361 - 2205 3661 32509 203 1 15 365 0 12 310 12 11 9 0 1 506 1 0 24 chain 217314 chrY 59373566 + 23339321 23342434 HERV9-int 5642 - 818 5615 18039 11 0 1 176 0 1795 359 10 11 90 1 5 261 1 2 177 0 1 234 1 0 5 0 1 190 36 0 160 6 5 62 0 2 37 15 6 7 0 9 102 120 30 80 0 1 82 1 0 95 40 39 71 0 4 103 1 0 4 9 10 124 0 1 213 14 15 94 0 1 121 chain 8579 chrY 59373566 + 23345518 23346154 LTR12D 1347 + 594 1170 167855 15 82 0 37 220 377 10 103 0 16 1 0 26 62 32 4 1 0 59 chain 2370 chrY 59373566 + 23345898 23345925 LTR12D 1347 + 1048 1075 234519 27 chain 48613 chrY 59373566 + 23357051 23357646 L1P1 4361 - 1234 1829 60021 595 chain 17886 chrY 59373566 + 23357650 23357850 L1PA6 6164 + 5024 5224 133149 200 chain 74962 chrY 59373566 + 23357850 23358780 L1PA6 6164 + 5229 6159 46029 475 4 3 119 0 1 216 0 1 51 2 0 23 1 2 39 chain 17974 chrY 59373566 + 23381741 23381986 AluY 311 + 49 293 132929 74 1 0 16 18 18 136 chain 2993 chrY 59373566 + 23429744 23429776 L1PA15-16 3068 + 1307 1339 225200 32 chain 15503 chrY 59373566 + 23429839 23430048 AluY 311 + 57 261 139879 76 15 10 118 chain 3723 chrY 59373566 + 23437112 23437163 L1MA7 2200 + 1880 1931 211585 51 chain 45879 chrY 59373566 + 23440305 23440909 L1PA7 6471 - 8 608 62144 81 2 0 292 2 1 74 6 5 147 chain 104174 chrY 59373566 + 23441216 23442617 L1P3 4156 + 2731 4135 35696 226 0 1 112 0 1 109 11 10 21 8 0 271 0 2 5 3 0 119 2 3 7 0 2 8 0 2 51 26 35 391 9 6 22 chain 75073 chrY 59373566 + 23447356 23448284 L1P1 4361 + 3401 4341 45984 178 0 12 212 4 5 248 0 1 23 0 1 69 1 0 155 1 0 23 2 1 12 chain 27967 chrY 59373566 + 23455053 23455346 AluYa5 310 - 15 308 93119 293 chain 8668 chrY 59373566 + 23460103 23460214 MLT2A2 560 + 0 111 167379 111 chain 3871 chrY 59373566 + 23464993 23465035 LTR12C 1709 - 991 1033 209293 42 chain 21436 chrY 59373566 + 23480382 23480637 L1PA3long 6157 + 5909 6157 122386 94 7 0 154 chain 176654 chrY 59373566 + 23512371 23514423 L1PA4 6152 - 14 2068 21287 238 0 1 977 1 2 836 chain 505478 chrY 59373566 + 23516303 23522412 L1PA4 6152 + 3 6140 6496 585 2 1 4 0 1 206 0 1 138 0 3 205 8 11 716 0 4 58 0 4 187 2 3 150 1 0 33 2 0 78 0 2 263 9 8 22 0 1 233 8 7 589 2 1 163 1 0 47 0 1 626 0 4 101 0 1 155 0 4 657 0 1 116 0 3 36 0 1 701 0 1 5 chain 24404 chrY 59373566 + 23544857 23545172 L1PA6 6164 - 2 315 108056 4 1 0 149 1 0 160 chain 102524 chrY 59373566 + 23563615 23564786 L1PA3long 6157 + 4980 6152 36126 482 0 1 689 chain 123480 chrY 59373566 + 23568904 23570393 LTR12C 1709 + 0 1709 29886 650 0 119 68 1 0 275 1 0 5 3 1 106 0 4 160 1 0 8 0 102 211 chain 247074 chrY 59373566 + 23600076 23603525 L1PA7 6471 - 5 3448 16392 8 0 1 31 1 2 47 8 0 8 0 8 62 1 2 335 2 1 5 0 1 52 3 7 6 4 0 50 3 4 208 5 7 133 0 1 42 0 1 80 1 0 384 0 1 133 1 2 140 4 8 21 13 17 84 13 12 152 7 5 36 6 7 161 0 1 59 0 1 154 1 2 6 1 0 149 9 2 235 9 0 36 11 12 138 6 1 128 3 5 124 0 1 4 4 3 44 5 0 73 chain 45770 chrY 59373566 + 23608119 23608726 LTR14C 587 - 2 585 62257 46 23 0 164 1 0 373 chain 26986 chrY 59373566 + 23609222 23609523 AluYg6 310 - 16 310 96329 168 1 0 7 6 0 119 chain 6431 chrY 59373566 + 23609533 23609911 HERVK14C-int 762 - 3 199 181772 23 121 18 21 1 0 10 1 0 8 119 45 13 4 3 50 2 0 5 chain 22387 chrY 59373566 + 23720139 23720441 L1PA6 6164 + 5858 6162 118551 133 1 14 7 12 0 6 0 1 143 chain 4847 chrY 59373566 + 23734265 23734473 HERVE_a-int 7009 + 135 322 196822 21 12 9 19 1 0 6 3 0 30 74 64 4 1 0 6 1 0 7 4 3 6 1 0 12 chain 19709 chrY 59373566 + 23741938 23742190 LTR14C 587 + 0 254 128069 64 0 1 56 3 4 129 chain 45516 chrY 59373566 + 23777652 23778152 L1PA2 6032 + 5532 6032 62486 500 chain 41217 chrY 59373566 + 23785980 23786491 MER9a2 513 - 0 513 67628 466 0 1 26 0 1 19 chain 254943 chrY 59373566 + 23786493 23789892 HERVK9-int 4720 - 3 4293 15985 12 1 0 4 0 1 305 1 0 344 1 0 4 7 13 7 5 0 410 4 18 661 0 3 104 49 0 343 18 19 29 0 1 19 23 947 88 1 2 372 41 37 440 14 14 80 0 1 12 chain 57790 chrY 59373566 + 23789931 23790634 MER11C 1089 - 16 719 54091 505 1 0 129 4 5 64 chain 25467 chrY 59373566 + 23807331 23807602 AluYf4 310 + 33 304 102368 271 chain 29607 chrY 59373566 + 23831249 23831566 AluYb8 318 - 1 318 86192 317 chain 116573 chrY 59373566 + 23837729 23839112 LTR12C 1709 - 0 1709 32266 87 1 0 309 0 5 80 0 4 106 6 322 500 0 1 190 0 1 104 chain 37407 chrY 59373566 + 23874894 23875364 MER9a2 513 + 0 472 72948 416 0 2 54 chain 280685 chrY 59373566 + 23876752 23880453 HERVK9-int 4720 + 58 4717 14606 66 1 0 9 1 0 17 11 10 352 13 14 7 1 0 449 1 2 47 23 24 310 2 0 131 0 924 40 6 5 4 0 1 251 0 1 111 1 3 32 6 7 403 1 0 190 12 14 546 33 34 338 0 31 286 chain 164679 chrY 59373566 + 23952209 23954594 HERV9-int 5642 - 3380 5637 22707 223 3 2 56 1 0 58 1 0 183 1 0 185 1 0 17 30 65 108 0 1 245 4 0 8 3 4 61 159 0 234 25 24 68 0 4 107 13 9 116 0 1 186 0 3 289 chain 3349 chrY 59373566 + 23955162 23955234 LTR12 884 - 548 595 218065 21 25 0 26 chain 43610 chrY 59373566 + 23982999 23983622 LTR12_ 688 + 15 680 64672 42 0 41 69 11 11 90 30 32 213 5 4 163 chain 19405 chrY 59373566 + 23997394 23997645 LTR14C 587 - 331 587 128932 132 5 10 114 chain 29879 chrY 59373566 + 24097767 24098221 LTR7B 505 - 10 505 85168 41 24 23 66 1 0 85 29 0 28 3 27 12 0 38 60 0 10 105 chain 13347 chrY 59373566 + 24104347 24104494 L1PA2 6032 + 5882 6029 146895 147 chain 51305 chrY 59373566 + 24113774 24114520 HERVK9-int 4720 - 3991 4714 58107 550 31 26 20 1 0 9 1 0 62 55 39 17 chain 35367 chrY 59373566 + 24115210 24115651 MER9a2 513 - 70 513 75708 399 0 1 29 1 2 12 chain 259958 chrY 59373566 + 24130363 24133413 L1PA4 6152 - 9 3069 15704 511 1 0 157 0 1 1196 1 4 112 0 1 7 0 3 168 1 2 668 0 1 146 0 1 82 chain 8994 chrY 59373566 + 24133425 24133544 L1P1 4361 - 4240 4360 165635 106 3 4 10 chain 13948 chrY 59373566 + 24134812 24135761 LTR15 485 - 10 485 144760 121 763 289 65 chain 33824 chrY 59373566 + 24137879 24138259 L1PA2 6032 - 0 380 77902 380 chain 38297 chrY 59373566 + 24138259 24138670 L1PA2 6032 + 5244 5655 71711 411 chain 26488 chrY 59373566 + 24139362 24139699 L1PA4 6152 - 184 520 98086 143 8 7 186 chain 42278 chrY 59373566 + 24139700 24140217 L1PA4 6152 - 520 1036 66297 157 0 1 165 10 8 185 chain 14600 chrY 59373566 + 24143669 24143844 L1P1 4361 + 4154 4328 142589 151 1 0 23 chain 156167 chrY 59373566 + 24144961 24146820 L1PA5 6144 + 4252 6113 23837 85 0 4 953 1 0 68 16 15 248 1 0 201 0 1 286 chain 9419 chrY 59373566 + 24184577 24184698 LTR22 571 - 450 571 163469 121 chain 494452 chrY 59373566 + 24187090 24193220 L1PA5 6144 + 14 6137 7145 1419 1 0 468 2 1 461 0 1 518 1 0 265 11 12 513 0 1 260 0 1 1122 0 1 46 0 1 20 0 2 36 43 29 12 8 7 130 1 0 217 0 1 119 0 2 7 13 11 40 1 0 154 1 0 95 3 0 3 0 8 140 chain 65287 chrY 59373566 + 24215442 24216167 L1PA3long 6157 + 5427 6152 50431 725 chain 47354 chrY 59373566 + 24231214 24231800 LTR14C 587 + 0 587 60936 397 0 1 189 chain 74744 chrY 59373566 + 24256484 24257378 MER11D 897 - 0 897 46142 305 2 1 25 2 0 120 0 1 262 0 4 129 1 2 48 chain 27321 chrY 59373566 + 24336793 24337087 AluYb8 318 - 10 318 95204 36 0 14 258 chain 85452 chrY 59373566 + 24339136 24340137 L1PA4 6152 - 901 1904 41361 509 5 0 179 6 13 302 chain 72052 chrY 59373566 + 24340137 24341006 L1PA4 6152 + 5260 6143 47457 44 2 6 511 0 3 74 8 14 126 0 1 104 chain 13900 chrY 59373566 + 24353163 24353318 L1PA4 6152 - 12 168 144915 95 0 1 60 chain 24315 chrY 59373566 + 24359468 24359773 AluY 311 + 7 306 108573 119 6 0 180 chain 286875 chrY 59373566 + 24373089 24376361 L1PA3long 6157 - 0 3278 14232 156 2 0 182 0 1 119 1 0 218 0 1 1057 8 9 270 0 1 447 0 2 259 0 1 166 0 2 387 chain 23735 chrY 59373566 + 24389894 24390202 AluYb8 318 - 4 308 111862 203 3 2 24 11 10 12 2 0 53 chain 9768 chrY 59373566 + 24402587 24402735 HERV9-int 5642 - 1724 1876 161754 14 0 3 47 15 16 72 chain 361483 chrY 59373566 + 24403689 24408492 HERV9-int 5642 - 818 5631 11328 11 0 1 198 0 2 631 1 0 127 15 16 243 1 19 20 1 6 69 0 1 450 1 0 1079 1 2 4 1 0 77 7 50 195 0 1 117 0 1 222 1 3 31 1 2 139 3 0 21 81 1 152 0 3 135 1 0 78 0 4 421 1 2 66 1 2 98 34 45 68 chain 7144 chrY 59373566 + 24409121 24409210 LTR12 884 - 676 790 176448 64 0 25 25 chain 29871 chrY 59373566 + 24420892 24421212 AluYb8 318 - 0 318 85204 200 2 0 118 chain 58050 chrY 59373566 + 24434989 24435609 L1PA2 6032 + 5408 6028 53951 620 chain 49038 chrY 59373566 + 24465915 24466491 L1PA4 6152 - 9 584 59720 12 1 0 563 chain 550132 chrY 59373566 + 24485768 24491792 L1PA2 6032 - 9 6032 1432 332 0 1 2970 1 0 2464 1 0 256 chain 5597 chrY 59373566 + 24512587 24512651 LTR12C 1709 - 991 1055 189111 64 chain 2465 chrY 59373566 + 24512752 24512778 LTR12C 1709 - 996 1022 233521 26 chain 6512 chrY 59373566 + 24512836 24512974 LTR12C 1709 - 960 1059 181150 60 49 10 29 chain 5817 chrY 59373566 + 24512974 24513162 LTR12C 1709 - 574 690 181498 17 122 50 49 chain 13900 chrY 59373566 + 24525393 24525548 L1PA4 6152 + 5984 6140 144914 60 0 1 95 chain 72052 chrY 59373566 + 24537705 24538574 L1PA4 6152 - 9 892 47458 104 0 1 126 8 14 78 0 3 507 2 6 44 chain 85321 chrY 59373566 + 24538574 24539575 L1PA4 6152 + 4248 5251 41408 302 6 13 173 5 0 515 chain 74744 chrY 59373566 + 24621321 24622215 MER11D 897 + 0 897 46141 48 1 2 129 0 4 265 0 1 122 2 0 20 2 1 305 chain 47140 chrY 59373566 + 24646897 24647483 LTR14C 587 - 0 587 61096 189 0 1 397 chain 66497 chrY 59373566 + 24662511 24663244 L1PA2 6032 - 3 733 49869 12 3 0 718 chain 5616 chrY 59373566 + 24670300 24670368 L1PA6 6164 + 6090 6160 188916 9 0 2 59 chain 494264 chrY 59373566 + 24685467 24691598 L1PA5 6144 - 7 6130 7155 140 6 11 95 1 0 157 1 0 37 13 11 7 0 2 119 0 1 219 1 0 128 8 7 12 44 29 36 0 2 20 0 1 46 0 1 1124 0 1 258 0 1 513 11 12 265 1 0 518 0 1 461 2 1 468 1 0 1419 chain 9419 chrY 59373566 + 24693990 24694111 LTR22 571 + 0 121 163468 121 chain 3651 chrY 59373566 + 24726414 24726496 MLT1A1 405 - 93 174 212787 19 13 13 10 8 7 32 chain 156167 chrY 59373566 + 24731868 24733727 L1PA5 6144 - 31 1892 23838 286 0 1 201 1 0 248 16 15 68 1 0 953 0 4 85 chain 14600 chrY 59373566 + 24734844 24735019 L1P1 4361 - 33 207 142591 23 1 0 151 chain 68538 chrY 59373566 + 24738471 24739326 L1PA4 6152 + 5116 5968 49021 185 10 8 170 0 1 152 1 0 186 8 7 143 chain 38297 chrY 59373566 + 24740018 24740429 L1PA2 6032 - 377 788 71712 411 chain 32210 chrY 59373566 + 24740429 24740809 L1PA2 6032 + 5652 6032 80505 214 5 0 7 5 10 149 chain 13948 chrY 59373566 + 24742927 24743876 LTR15 485 + 0 475 144758 65 763 289 121 chain 259286 chrY 59373566 + 24745274 24748324 L1PA4 6152 + 3083 6143 15738 87 0 1 141 0 1 668 1 2 168 0 3 7 0 1 112 1 4 1196 0 1 157 1 0 511 chain 31866 chrY 59373566 + 24763036 24763477 MER9a2 513 + 0 443 81072 12 1 2 32 0 1 198 13 31 7 18 0 160 chain 51305 chrY 59373566 + 24764159 24764905 HERVK9-int 4720 + 6 729 58106 17 55 39 62 1 0 9 1 0 20 31 26 550 chain 13347 chrY 59373566 + 24774189 24774336 L1PA2 6032 - 3 150 146898 147 chain 29469 chrY 59373566 + 24780462 24780916 LTR7B 505 + 0 495 86759 108 0 10 57 15 77 28 29 0 85 1 0 66 24 23 41 chain 22725 chrY 59373566 + 24819167 24819480 L1PA6 6164 + 5849 6160 116956 142 11 12 151 3 0 6 chain 21330 chrY 59373566 + 24843917 24844163 L1PA4 6152 - 9 255 122761 246 chain 128925 chrY 59373566 + 24854474 24856026 LTR12C 1709 + 0 1709 28326 101 3 0 5 0 3 200 0 1 4 1 0 385 0 159 253 1 0 6 2 0 107 0 4 53 4 1 427 chain 43224 chrY 59373566 + 24857989 24858550 LTR22 571 + 0 564 65142 297 0 1 172 9 11 83 chain 5646 chrY 59373566 + 24861416 24861483 MER52C 1267 - 177 244 188605 67 chain 2763 chrY 59373566 + 24869910 24869944 THE1A 353 + 319 353 229293 34 chain 35176 chrY 59373566 + 24878381 24878852 LTR15 485 + 0 475 75944 126 1 0 24 0 2 127 1 5 44 1 0 69 1 0 57 5 6 15 chain 497906 chrY 59373566 + 24919402 24927941 L1PA5 6144 - 0 6144 6962 153 7 0 103 1 2 60 28 0 109 0 2 845 8 7 241 1 0 275 0 2 357 0 1 477 0 1 26 4 5 67 0 1 142 1 2 70 3 1 25 1 0 835 0 2 896 2370 0 291 10 11 73 0 1 174 0 1 886 chain 54655 chrY 59373566 + 24924140 24924812 L1PA3long 6157 - 0 683 55932 121 3 22 12 7 0 9 2 1 518 chain 140258 chrY 59373566 + 24924874 24926476 L1PA3long 6157 + 3807 5408 26108 1233 1 0 368 chain 10553 chrY 59373566 + 24931967 24932453 LTR12D 1347 + 589 1081 158037 79 78 0 26 45 47 27 193 276 4 1 0 33 chain 2918 chrY 59373566 + 24932091 24932124 LTR12D 1347 + 444 477 193799 33 chain 428576 chrY 59373566 + 24932808 24938554 HERV9-int 5642 + 4 5642 9341 87 0 1 62 1 2 235 0 1 112 1 2 93 12 12 177 5 3 5 0 1 291 80 0 19 16 12 146 0 1 314 9 10 250 1 3 992 0 2 577 16 15 582 9 11 112 0 3 5 6 3 781 7 6 78 6 10 191 28 27 215 10 8 36 8 6 21 2 1 60 1 0 13 14 10 10 33 7 17 chain 46126 chrY 59373566 + 24941183 24941812 LTR12D 1347 + 460 1347 61918 76 1 32 119 7 24 163 0 1 4 2 1 34 23 233 200 chain 15762 chrY 59373566 + 24975707 24975924 MER11B 1079 - 31 255 139080 89 8 14 65 0 1 55 chain 61858 chrY 59373566 + 24975924 24977004 HERVK11-int 2540 - 460 1474 51971 50 13 12 103 0 1 8 6 5 66 1 0 101 20 15 75 18 12 277 7 1 63 22 2 35 15 4 24 1 0 4 17 7 27 3 0 9 69 67 46 chain 297110 chrY 59373566 + 24993370 24996935 L1PA4 6152 - 0 3548 13577 6 0 5 115 4 0 130 23 7 336 6 7 31 0 1 134 0 1 1505 6 1 1269 chain 6731 chrY 59373566 + 24996935 24997013 L1PA4 6152 + 2525 2603 179462 78 chain 532786 chrY 59373566 + 25001092 25007107 L1PA2 6032 + 3 6028 3878 68 1 2 190 0 1 4 1 0 844 0 1 427 0 6 1023 1 0 535 0 1 404 0 1 4 3 2 306 0 1 983 0 1 1221 chain 9841 chrY 59373566 + 25017678 25017806 L1PA4 6152 - 4911 5043 161388 76 0 3 36 0 1 16 chain 402690 chrY 59373566 + 25017806 25022564 L1PA4 6152 + 1228 6013 10006 8 0 1 498 0 2 35 4 0 105 0 16 413 7 6 859 1 0 121 1 0 390 0 1 557 0 1 394 1 0 112 0 15 300 0 1 220 1 0 27 3 2 701 chain 76030 chrY 59373566 + 25039185 25040153 LTR5_Hs 974 - 0 974 45464 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 444868 chrY 59373566 + 25042546 25048251 L1PA5 6144 - 0 6143 8908 410 0 1 192 1 2 18 3 334 107 0 1 540 1 0 198 0 4 178 0 1 229 0 62 110 0 15 57 14 14 391 0 1 121 1 0 244 0 1 242 0 1 83 0 1 16 0 3 252 0 2 5 19 0 580 0 1 8 0 1 100 5 4 362 9 10 13 1 0 60 9 0 181 9 12 287 0 13 508 7 33 134 chain 488361 chrY 59373566 + 25065956 25072055 L1PA5 6144 + 0 6123 7425 8 0 1 33 25 26 666 16 0 169 1 7 256 0 8 45 1 0 287 0 18 646 0 1 134 14 13 221 2 0 131 1 0 4 1 3 343 6 8 204 1 0 258 33 34 151 0 1 774 2 5 219 0 1 604 9 10 106 0 1 495 2 1 231 chain 2829 chrY 59373566 + 25083087 25083118 LTR12 884 + 294 325 228231 31 chain 3620 chrY 59373566 + 25083123 25083199 LTR12 884 + 157 208 213339 36 25 0 15 chain 373543 chrY 59373566 + 25083792 25088862 HERV9-int 5642 + 0 4824 10975 23 1 2 152 1 2 77 4 8 57 0 1 10 1 3 460 1 0 161 1 49 100 25 22 452 5 4 637 0 1 249 307 5 553 6 8 164 0 1 11 0 3 162 0 1 661 17 16 4 0 1 726 6 1 25 0 1 11 chain 35787 chrY 59373566 + 25093293 25093693 L1PA3long 6157 + 5752 6152 75156 400 chain 19598 chrY 59373566 + 25170046 25170353 AluSp 311 - 4 300 128387 26 5 4 39 43 33 194 chain 11206 chrY 59373566 + 25194681 25194804 L1PA4 6152 - 16 139 155396 123 chain 6620 chrY 59373566 + 25197430 25197719 L1PREC2 3366 - 2921 3215 180309 45 2 0 30 66 80 23 104 97 19 chain 30740 chrY 59373566 + 25223654 25224219 LTR12C 1709 - 633 1037 82969 84 119 0 155 1 0 154 41 0 11 chain 396710 chrY 59373566 + 25225704 25230619 HERV9-int 5642 - 830 5642 10217 1029 0 1 222 0 1 123 1 0 133 0 2 215 0 2 805 1 0 407 0 1 279 15 13 328 1 0 144 84 0 122 11 20 52 5 1 117 1 0 49 0 1 367 1 0 324 0 1 36 26 0 17 chain 5931 chrY 59373566 + 25229411 25229484 HERV9-int 5642 - 4535 4608 185881 73 chain 5805 chrY 59373566 + 25231272 25231387 LTR12C 1709 - 705 816 187094 50 32 28 33 chain 3199 chrY 59373566 + 25231532 25231699 LTR12C 1709 - 556 610 220947 35 113 1 5 1 0 13 chain 35193 chrY 59373566 + 25249256 25249792 MLT2A2 560 + 0 545 75930 299 15 14 83 55 65 84 chain 8432 chrY 59373566 + 25252329 25252418 L1PA4 6152 - 16 105 168673 89 chain 3459 chrY 59373566 + 25257953 25258011 L1PB3 3668 - 104 160 216004 30 8 6 20 chain 5423 chrY 59373566 + 25268203 25268279 L1MA4 2864 + 92 164 190772 7 4 0 65 chain 546118 chrY 59373566 + 25290814 25296852 L1PA2 6032 + 0 6031 1927 229 0 1 27 1 0 458 1 0 399 4 0 1455 1 0 2609 0 1 840 2 0 12 chain 29219 chrY 59373566 + 25341071 25341401 AluYb8 318 + 0 317 87965 310 13 0 7 chain 28994 chrY 59373566 + 25369433 25369763 AluYb8 318 - 1 318 89017 7 13 0 310 chain 546332 chrY 59373566 + 25404230 25410268 L1PA2 6032 - 1 6032 1905 12 2 0 846 0 1 2610 1 0 1448 4 0 404 1 0 453 1 0 27 0 1 229 chain 8432 chrY 59373566 + 25460586 25460675 L1PA4 6152 + 6047 6136 168671 89 chain 34697 chrY 59373566 + 25463194 25463745 MLT2A2 560 - 0 560 76631 99 55 65 83 15 14 13 13 13 273 chain 6342 chrY 59373566 + 25481351 25481572 LTR12C 1709 + 1033 1140 182451 24 41 0 49 86 13 21 chain 396802 chrY 59373566 + 25482378 25487293 HERV9-int 5642 + 0 4812 10212 12 26 0 41 0 1 324 1 0 367 0 1 49 1 0 117 5 1 52 11 20 122 84 0 137 1 0 335 15 13 280 0 1 406 1 0 807 0 2 213 0 2 133 1 0 123 0 1 226 0 1 1025 chain 32634 chrY 59373566 + 25488756 25489343 LTR12C 1709 + 650 1076 79791 53 41 0 134 1 0 155 119 0 84 chain 3473 chrY 59373566 + 25488809 25488850 LTR12C 1709 + 1022 1063 205230 41 chain 572 chrY 59373566 + 25489382 25489423 LTR12C 1709 + 677 718 197553 41 chain 28177 chrY 59373566 + 25505134 25505437 AluYa5 310 - 0 302 92382 217 1 0 85 chain 368970 chrY 59373566 + 25526389 25530736 L1P1 4361 - 20 4360 11123 12 2 1 23 1 0 155 1 0 633 0 1 258 0 4 1059 0 4 878 9 8 4 0 1 272 1 0 327 7 0 127 1 0 357 5 1 215 chain 9934 chrY 59373566 + 25542257 25542399 L1MA5 2750 + 2468 2609 160909 89 12 11 41 chain 22586 chrY 59373566 + 25556352 25556755 L1PA14 3548 - 94 481 117654 35 47 42 36 4 0 9 1 0 22 0 1 18 4 5 58 8 7 84 1 0 6 2 0 17 9 5 42 chain 23210 chrY 59373566 + 25574802 25575078 AluSp 311 - 12 288 114642 276 chain 202167 chrY 59373566 + 25587243 25589451 L1PA2 6032 - 0 2209 19058 2155 0 1 53 chain 41298 chrY 59373566 + 25604404 25604932 MER41A 554 - 8 554 67536 73 0 5 61 5 17 192 0 1 197 chain 10703 chrY 59373566 + 25607345 25607468 L1PA4 6152 - 4 127 157399 123 chain 43307 chrY 59373566 + 25629933 25630494 LTR22 571 - 7 571 65035 83 9 11 172 0 1 297 chain 128663 chrY 59373566 + 25632457 25634009 LTR12C 1709 - 0 1709 28405 427 4 1 53 0 4 107 2 0 6 1 0 115 0 159 523 1 0 4 0 1 200 0 3 5 3 0 101 chain 21330 chrY 59373566 + 25644320 25644566 L1PA4 6152 + 5897 6143 122759 246 chain 22725 chrY 59373566 + 25668993 25669306 L1PA6 6164 - 4 315 116957 6 3 0 151 11 12 142 chain 30141 chrY 59373566 + 25707566 25708020 LTR7B 505 - 10 505 84345 41 24 23 66 1 0 85 29 0 28 3 27 12 0 38 60 0 10 105 chain 13347 chrY 59373566 + 25714155 25714302 L1PA2 6032 + 5882 6029 146896 147 chain 51052 chrY 59373566 + 25723064 25723810 HERVK9-int 4720 - 3991 4714 58278 550 31 26 20 1 0 9 1 0 62 55 39 17 chain 35367 chrY 59373566 + 25724492 25724933 MER9a2 513 - 70 513 75707 399 0 1 29 1 2 12 chain 259314 chrY 59373566 + 25739652 25742702 L1PA4 6152 - 9 3069 15737 511 1 0 157 0 1 1196 1 4 112 0 1 7 0 3 168 1 2 668 0 1 146 0 1 82 chain 8994 chrY 59373566 + 25742714 25742833 L1P1 4361 - 4240 4360 165636 106 3 4 10 chain 13948 chrY 59373566 + 25744100 25745049 LTR15 485 - 10 485 144759 121 763 289 65 chain 33824 chrY 59373566 + 25747165 25747545 L1PA2 6032 - 0 380 77901 380 chain 38166 chrY 59373566 + 25747545 25747956 L1PA2 6032 + 5244 5655 71889 411 chain 26366 chrY 59373566 + 25748649 25748986 L1PA4 6152 - 184 520 98551 143 8 7 186 chain 41905 chrY 59373566 + 25748987 25749500 L1PA4 6152 - 520 1032 66749 157 0 1 165 10 8 181 chain 14600 chrY 59373566 + 25752956 25753131 L1P1 4361 + 4154 4328 142588 151 1 0 23 chain 156045 chrY 59373566 + 25754248 25756107 L1PA5 6144 + 4252 6113 23854 85 0 4 953 1 0 68 16 15 248 1 0 201 0 1 286 chain 9644 chrY 59373566 + 25793867 25793988 LTR22 571 - 450 571 162378 121 chain 494396 chrY 59373566 + 25796380 25802510 L1PA5 6144 + 14 6137 7148 1419 1 0 468 2 1 461 0 1 518 1 0 265 11 12 513 0 1 260 0 1 1122 0 1 46 0 1 20 0 2 36 43 29 12 8 7 130 1 0 217 0 1 119 0 2 7 13 11 40 1 0 154 1 0 95 6 11 140 chain 65165 chrY 59373566 + 25825126 25825851 L1PA3long 6157 + 5427 6152 50490 725 chain 47140 chrY 59373566 + 25840902 25841488 LTR14C 587 + 0 587 61095 397 0 1 189 chain 523489 chrY 59373566 + 25850758 25856744 L1PA3long 6157 + 10 6152 4812 771 0 128 140 0 2 1646 1 0 486 0 1 1096 0 26 641 1 0 4 0 1 1047 4 5 136 1 0 12 chain 43569 chrY 59373566 + 25866598 25867234 HERVK11-int 2540 + 1598 2234 64724 112 23 20 23 0 1 94 1 0 94 0 1 75 13 15 6 3 0 65 5 7 105 0 1 17 chain 86364 chrY 59373566 + 25868108 25869191 MER11C 1089 + 0 1089 41011 86 5 7 220 0 4 273 8 9 486 1 0 4 chain 174654 chrY 59373566 + 25876579 25878553 L1PA3long 6157 - 811 2787 21519 733 2 3 745 0 1 494 chain 19679 chrY 59373566 + 25878559 25878791 L1PA3long 6157 + 5340 5572 128173 232 chain 50406 chrY 59373566 + 25878791 25879375 L1PA3long 6157 + 5573 6157 58709 584 chain 26724 chrY 59373566 + 25883669 25883957 L1PA2 6032 - 2 290 97244 288 chain 7009 chrY 59373566 + 25883957 25884036 L1PA2 6032 + 5658 5736 177403 47 1 0 31 chain 28150 chrY 59373566 + 25899509 25899810 AluYa5 310 + 0 300 92460 132 1 0 168 chain 498892 chrY 59373566 + 25902428 25908609 L1PA4 6152 + 0 6141 6906 455 2 3 122 0 3 5 6 3 588 0 9 35 15 14 77 5 6 95 21 19 23 2 1 504 0 1 238 0 2 2461 1 2 203 52 0 165 1 0 68 0 15 8 15 0 876 4 6 134 chain 446826 chrY 59373566 + 25919156 25924766 L1PA5 6144 - 4 6144 8854 138 0 1 319 0 1 29 13 11 6 0 2 315 5 6 25 1 0 140 0 5 52 0 1 3 0 15 306 22 0 167 5 6 244 1 5 1424 1 2 36 1 0 118 0 1 234 1 0 213 7 1 443 2 1 318 0 2 110 11 10 9 1 2 245 1 2 197 3 4 240 0 1 32 0 1 81 0 525 91 chain 234901 chrY 59373566 + 25924773 25927811 L1P1 4361 - 1281 4356 17037 60 0 1 700 18 9 37 0 17 523 0 1 294 1 2 187 13 14 169 0 1 51 1 0 67 1 3 206 1 0 142 0 10 419 17 31 131 chain 47567 chrY 59373566 + 25939421 25939957 L1PA3long 6157 - 1 537 60793 536 chain 317676 chrY 59373566 + 26048748 26052666 L1PA4 6152 - 6 6152 12688 12 1 0 137 5 6 92 2 1 5 0 1 366 0 1 436 0 9 116 5 6 69 28 2106 244 1 133 266 1 2 196 1 0 26 0 1 193 0 1 307 0 9 162 1 0 12 0 1 175 0 1 271 0 1 69 11 5 708 chain 57524 chrY 59373566 + 26055807 26056459 L1P1 4361 - 33 684 54221 23 1 0 155 1 0 382 0 1 90 chain 129135 chrY 59373566 + 26056468 26057925 L1PA2 6032 + 4573 6032 28282 1293 1 6 6 5 0 86 0 2 66 chain 87198 chrY 59373566 + 26077328 26078391 MER11C 1089 - 15 1082 40690 475 0 1 186 0 3 402 chain 161485 chrY 59373566 + 26089959 26091924 L1PA4 6152 - 16 1999 23129 826 0 5 345 1 2 23 15 21 284 0 1 4 6 5 133 0 2 126 4 8 198 chain 276368 chrY 59373566 + 26103018 26105981 L1HS 6032 - 0 2963 14849 2963 chain 139731 chrY 59373566 + 26109767 26111454 L1PA4 6152 + 3276 4978 26184 10 0 1 232 8 25 140 3 0 1294 chain 39162 chrY 59373566 + 26111454 26111960 L1PA4 6152 + 5103 5609 70526 163 7 0 32 0 4 48 1 0 4 4 7 76 0 1 171 chain 45341 chrY 59373566 + 26111962 26112498 L1PA4 6152 + 5609 6143 62667 395 2 0 139 chain 212042 chrY 59373566 + 26126463 26128904 L1PA3long 6157 - 0 2444 18360 99 0 1 42 0 8 186 1 2 220 15 9 955 1 0 922 chain 20910 chrY 59373566 + 26128904 26129135 L1PA3long 6157 + 3470 3701 123915 231 chain 3433 chrY 59373566 + 26147203 26147261 L1P 111 - 2 64 216517 7 1 0 11 4 9 35 chain 341496 chrY 59373566 + 26204848 26209126 L1P1 4361 + 59 4326 11853 72 0 1 108 1 11 634 0 1 9 0 1 319 0 3 46 0 1 290 0 2 293 1 2 749 0 1 170 2 1 47 0 1 4 2 1 107 26 0 738 3 0 480 1 0 154 1 0 21 chain 511524 chrY 59373566 + 26209794 26215992 L1PA4 6152 + 2 6143 6024 578 1 0 256 41 0 718 24 0 290 0 1 4 1 0 842 1 0 135 0 1 4 2 1 338 0 1 100 0 1 4 6 5 468 0 1 884 0 3 217 0 7 250 0 1 189 4 1 841 chain 491469 chrY 59373566 + 26255536 26261882 L1PA4 6152 - 15 6152 7298 448 4 5 340 315 0 583 0 1 118 3 16 307 1 0 316 0 22 472 5 11 234 1 3 186 0 5 660 0 33 585 6 7 48 0 1 169 0 24 307 18 15 860 19 20 136 0 1 4 1 0 200 chain 138654 chrY 59373566 + 26269501 26271092 L1PA3long 6157 - 0 1602 26374 26 0 1 141 1 0 4 0 1 676 4 1 477 0 13 262 chain 107013 chrY 59373566 + 26274678 26275908 L1PA3long 6157 + 4927 6157 34970 380 2 1 676 0 1 4 1 0 144 0 1 23 chain 85511 chrY 59373566 + 26283540 26284608 L1P1 4361 + 1 1070 41340 193 1 0 4 0 1 136 19 20 715 chain 23634 chrY 59373566 + 26303311 26303596 AluY 311 + 27 311 112392 96 1 0 188 chain 29236 chrY 59373566 + 26310632 26310941 AluYa5 310 - 1 310 87873 309 chain 92688 chrY 59373566 + 26362368 26363404 L1PA3long 6157 + 5109 6152 38753 201 0 4 630 0 3 205 chain 77884 chrY 59373566 + 26367381 26368257 L1PA2 6032 + 5151 6028 44572 46 1 2 829 chain 471546 chrY 59373566 + 26368746 26374165 L1PA4 6152 + 712 6143 7986 18 1 0 313 0 2 34 3 0 8 8 11 1604 4 9 497 0 1 1139 0 4 1772 0 1 18 chain 36627 chrY 59373566 + 26380258 26380721 LTR15 485 + 6 479 74061 50 1 0 223 1 5 155 3 0 12 0 9 13 0 1 5 chain 537118 chrY 59373566 + 26440573 26446586 L1PA2 6032 - 13 6031 3297 745 0 3 397 9 0 302 0 1 379 0 1 282 0 3 281 0 1 141 0 1 1050 0 1 707 0 1 838 0 1 699 0 1 183 chain 23176 chrY 59373566 + 26469405 26469704 AluY 311 + 5 295 114779 118 1 0 3 8 0 169 chain 8672 chrY 59373566 + 26474045 26474142 L1PA4 6152 + 6039 6136 167346 97 chain 16167 chrY 59373566 + 26474178 26474457 LTR39 781 + 193 474 137852 57 47 40 131 14 23 30 chain 53247 chrY 59373566 + 26487138 26488198 MER4E1 777 - 7 777 56860 210 0 4 6 9 7 24 7 29 148 304 0 40 4 5 92 1 0 4 7 5 157 2 1 13 7 0 25 chain 26386 chrY 59373566 + 26507367 26507670 AluY 311 + 2 306 98464 130 0 1 173 chain 497777 chrY 59373566 + 26553145 26561685 L1PA5 6144 - 0 6144 6971 153 7 0 103 1 2 60 28 0 109 0 2 845 8 7 241 1 0 275 0 2 357 0 1 477 0 1 26 4 5 67 0 1 142 1 2 70 4 1 25 1 0 835 0 2 896 2370 0 291 10 11 73 0 1 174 0 1 886 chain 54712 chrY 59373566 + 26557884 26558556 L1PA3long 6157 - 0 683 55889 121 3 22 12 7 0 9 2 1 518 chain 140725 chrY 59373566 + 26558618 26560220 L1PA3long 6157 + 3807 5408 26035 1233 1 0 368 chain 10553 chrY 59373566 + 26565716 26566202 LTR12D 1347 + 589 1081 158036 79 78 0 26 45 47 27 193 276 4 1 0 33 chain 2918 chrY 59373566 + 26565840 26565873 LTR12D 1347 + 444 477 193798 33 chain 429474 chrY 59373566 + 26566557 26572304 HERV9-int 5642 + 4 5642 9321 150 1 2 235 0 1 112 1 2 93 12 12 177 4 3 297 80 0 19 16 12 146 0 1 314 9 10 250 1 3 992 0 2 577 16 15 582 9 11 112 0 3 5 6 3 781 7 6 78 6 10 191 28 27 215 10 8 36 8 6 21 2 1 60 1 0 13 14 10 10 33 7 17 chain 46257 chrY 59373566 + 26574933 26575562 LTR12D 1347 + 460 1347 61805 76 1 32 119 7 24 163 0 1 4 2 1 34 23 233 200 chain 15762 chrY 59373566 + 26609455 26609672 MER11B 1079 - 31 255 139079 89 8 14 65 0 1 55 chain 61858 chrY 59373566 + 26609672 26610752 HERVK11-int 2540 - 460 1474 51970 50 13 12 103 0 1 8 6 5 66 1 0 101 20 15 75 18 12 277 7 1 63 22 2 35 15 4 24 1 0 4 17 7 27 3 0 9 69 67 46 chain 296717 chrY 59373566 + 26627118 26630683 L1PA4 6152 - 0 3548 13606 6 0 5 115 4 0 130 23 7 336 6 7 31 0 1 134 0 1 1505 6 1 1269 chain 6731 chrY 59373566 + 26630683 26630761 L1PA4 6152 + 2525 2603 179461 78 chain 533253 chrY 59373566 + 26634840 26640855 L1PA2 6032 + 3 6028 3814 68 1 2 190 0 1 4 1 0 844 0 1 427 0 6 1023 1 0 535 0 1 404 0 1 4 3 2 306 0 1 983 0 1 1221 chain 9841 chrY 59373566 + 26651427 26651555 L1PA4 6152 - 4911 5043 161387 76 0 3 36 0 1 16 chain 401667 chrY 59373566 + 26651555 26656313 L1PA4 6152 + 1228 6013 10037 8 0 1 498 0 2 35 4 0 103 0 16 415 7 6 859 1 0 121 1 0 390 0 1 557 0 1 394 1 0 112 7 22 293 0 1 220 1 0 27 3 2 701 chain 76030 chrY 59373566 + 26672934 26673902 LTR5_Hs 974 - 0 974 45463 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 289 chain 444362 chrY 59373566 + 26676295 26682000 L1PA5 6144 - 0 6143 8921 410 0 1 192 1 2 20 1 332 107 0 1 540 1 0 198 0 4 178 0 1 229 0 62 110 0 15 57 14 14 391 0 1 121 1 0 244 0 1 242 0 1 83 0 1 16 0 3 252 0 2 5 19 0 580 0 1 8 0 1 100 5 4 362 9 10 13 1 0 60 9 0 181 9 12 287 0 13 508 7 33 134 chain 488005 chrY 59373566 + 26699709 26705808 L1PA5 6144 + 0 6123 7444 8 0 1 33 25 26 666 16 0 169 1 7 256 0 8 45 1 0 287 0 18 646 0 1 134 14 13 221 2 0 131 1 0 4 1 3 343 6 8 204 1 0 258 33 34 151 0 1 774 2 5 219 0 1 604 9 10 106 0 1 495 2 1 231 chain 3620 chrY 59373566 + 26716870 26716946 LTR12 884 + 157 208 213338 36 25 0 15 chain 309222 chrY 59373566 + 26718394 26722620 HERV9-int 5642 + 948 4824 13035 66 37 0 91 25 22 452 5 4 637 0 1 249 318 5 553 6 8 164 0 1 11 0 3 162 0 1 677 1 0 4 0 1 726 6 1 25 0 1 11 chain 35778 chrY 59373566 + 26727051 26727451 L1PA3long 6157 + 5752 6152 75167 400 chain 19598 chrY 59373566 + 26803789 26804096 AluSp 311 - 4 300 128386 26 5 4 39 43 33 194 chain 11206 chrY 59373566 + 26828421 26828544 L1PA4 6152 - 16 139 155395 123 chain 30840 chrY 59373566 + 26857398 26857964 LTR12C 1709 - 633 1038 82786 84 119 0 155 1 0 154 41 0 12 chain 2374 chrY 59373566 + 26858056 26858081 LTR12C 1709 - 811 836 234433 25 chain 396710 chrY 59373566 + 26859448 26864363 HERV9-int 5642 - 830 5642 10216 1029 0 1 222 0 1 123 1 0 133 0 2 215 0 2 805 1 0 407 0 1 279 15 13 328 1 0 144 84 0 122 11 20 52 5 1 117 1 0 49 0 1 367 1 0 324 0 1 36 26 0 17 chain 5931 chrY 59373566 + 26863155 26863228 HERV9-int 5642 - 4535 4608 185880 73 chain 3199 chrY 59373566 + 26865276 26865443 LTR12C 1709 - 556 610 220946 35 113 1 5 1 0 13 chain 35193 chrY 59373566 + 26882992 26883528 MLT2A2 560 + 0 545 75929 299 15 14 83 55 65 84 chain 8432 chrY 59373566 + 26886051 26886140 L1PA4 6152 - 16 105 168672 89 chain 3459 chrY 59373566 + 26891672 26891730 L1PB3 3668 - 104 160 216003 30 8 6 20 chain 5423 chrY 59373566 + 26901925 26902001 L1MA4 2864 + 92 164 190771 7 4 0 65 chain 545513 chrY 59373566 + 26922153 26928193 L1PA2 6032 + 0 6031 2008 229 0 1 27 1 0 458 1 0 399 3 0 1455 1 0 2609 0 1 839 5 0 13 chain 29219 chrY 59373566 + 26955456 26955786 AluYb8 318 + 0 317 87964 310 13 0 7 chain 29219 chrY 59373566 + 26983819 26984149 AluYb8 318 - 1 318 87966 7 13 0 310 chain 546084 chrY 59373566 + 27022284 27028325 L1PA2 6032 - 1 6032 1933 12 5 0 846 0 1 2603 1 0 1455 4 0 404 1 0 453 1 0 27 0 1 229 chain 8432 chrY 59373566 + 27076266 27076355 L1PA4 6152 + 6047 6136 168670 89 chain 34697 chrY 59373566 + 27078866 27079417 MLT2A2 560 - 0 560 76630 99 55 65 83 15 14 13 13 13 273 chain 6342 chrY 59373566 + 27097010 27097231 LTR12C 1709 + 1033 1140 182450 24 41 0 49 86 13 21 chain 396802 chrY 59373566 + 27098037 27102952 HERV9-int 5642 + 0 4812 10211 12 26 0 41 0 1 324 1 0 367 0 1 49 1 0 117 5 1 52 11 20 122 84 0 137 1 0 335 15 13 280 0 1 406 1 0 807 0 2 213 0 2 133 1 0 123 0 1 226 0 1 1025 chain 29791 chrY 59373566 + 27104363 27105002 LTR12C 1709 + 676 1076 85497 19 79 1 42 41 0 99 1 0 155 119 0 84 chain 3658 chrY 59373566 + 27105041 27105082 LTR12C 1709 + 677 718 212604 41 chain 29336 chrY 59373566 + 27120804 27121114 AluYa5 310 - 0 310 87366 310 chain 43834 chrY 59373566 + 27133441 27133972 L1PA4 6152 + 5610 6136 64403 387 21 16 123 chain 26072 chrY 59373566 + 27151498 27151803 AluY 311 + 5 311 99737 127 0 1 178 chain 8341 chrY 59373566 + 27152981 27153076 AluY 311 + 5 100 169166 95 chain 35235 chrY 59373566 + 27234934 27235336 L1PA3long 6157 - 0 405 75877 10 1 4 391 chain 6408 chrY 59373566 + 27238385 27238469 LTR12D 1347 - 658 893 181961 15 0 150 30 0 1 39 chain 375071 chrY 59373566 + 27239767 27244848 HERV9-int 5642 - 818 5642 10915 11 0 1 27 5 0 725 0 1 4 1 0 677 0 1 162 0 3 11 0 1 164 6 8 553 318 5 249 0 1 637 5 4 452 25 22 100 1 49 165 1 0 456 1 3 10 0 1 21 0 3 5 4 1 27 4 8 82 0 1 148 1 2 23 chain 28710 chrY 59373566 + 27242118 27242420 AluYa5 310 - 8 310 90293 302 chain 2829 chrY 59373566 + 27245522 27245552 LTR12 884 - 757 787 228234 30 chain 489387 chrY 59373566 + 27256585 27262684 L1PA5 6144 - 21 6144 7390 231 2 1 495 0 1 106 9 10 604 0 1 219 2 5 774 0 1 173 11 12 259 1 0 203 6 8 343 1 3 4 1 0 131 2 0 221 14 13 137 0 1 643 0 18 287 1 0 45 0 8 256 1 7 171 17 1 663 25 26 33 0 1 8 chain 442921 chrY 59373566 + 27280396 27286101 L1PA5 6144 + 1 6144 8960 120 0 14 21 0 12 508 0 13 287 9 12 181 9 0 60 1 0 13 9 10 362 5 4 100 0 1 8 0 1 572 15 0 11 6 4 252 0 3 16 0 1 83 0 1 242 0 1 244 1 0 126 0 1 386 4 1 9 1 4 57 0 15 73 0 4 9 8 4 17 0 62 232 0 1 178 0 4 198 1 0 540 0 1 107 3 334 18 1 2 192 0 1 410 chain 75899 chrY 59373566 + 27288494 27289462 LTR5_Hs 974 + 0 974 45546 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 401678 chrY 59373566 + 27306084 27310842 L1PA4 6152 - 139 4924 10036 701 3 2 27 1 0 220 0 1 300 0 15 112 1 0 397 0 1 554 0 1 390 1 0 127 1 0 853 7 6 413 0 16 93 11 7 40 0 2 491 0 1 15 chain 9841 chrY 59373566 + 27310842 27310970 L1PA4 6152 + 1109 1241 161386 16 0 1 36 0 3 76 chain 532936 chrY 59373566 + 27321543 27327558 L1PA2 6032 - 4 6029 3859 1221 0 1 983 0 1 306 3 2 4 0 1 405 0 1 534 1 0 1023 0 6 427 0 1 844 1 0 4 0 1 190 1 2 68 chain 6600 chrY 59373566 + 27331637 27331715 L1PA4 6152 - 3549 3627 180454 78 chain 297223 chrY 59373566 + 27331715 27335280 L1PA4 6152 + 2604 6152 13570 1269 6 1 1505 0 1 134 0 1 31 6 7 336 23 7 130 4 0 115 0 5 6 chain 63763 chrY 59373566 + 27349570 27352729 HERVK11-int 2540 + 678 2080 51116 54 14 9 10 22 16 5 2 0 21 1951 273 46 69 67 9 3 0 27 17 7 4 1 0 24 15 4 35 22 2 63 7 1 277 18 12 75 20 15 101 1 0 66 6 5 8 0 1 103 13 12 50 chain 15762 chrY 59373566 + 27352729 27352946 MER11B 1079 + 824 1048 139078 55 0 1 65 8 14 89 chain 45292 chrY 59373566 + 27386845 27387474 LTR12D 1347 - 0 887 62727 200 23 233 34 2 1 4 0 1 163 7 24 119 13 44 64 chain 433387 chrY 59373566 + 27390103 27395850 HERV9-int 5642 - 0 5638 9226 17 33 7 10 14 10 14 1 0 59 2 1 21 8 6 36 10 8 224 1 0 209 6 10 78 7 6 781 6 3 5 0 3 126 1 3 576 16 15 577 0 2 992 1 3 250 9 10 314 0 1 158 4 0 27 80 0 289 4 3 177 12 12 93 1 2 112 0 1 235 1 2 150 chain 3543 chrY 59373566 + 27396508 27396593 LTR12D 1347 - 653 701 214675 36 37 0 12 chain 497344 chrY 59373566 + 27400722 27409262 L1PA5 6144 + 0 6144 6992 886 0 1 174 0 1 73 10 11 291 2370 0 899 0 2 832 1 0 25 4 1 70 1 2 142 0 1 67 4 5 17 1 0 8 0 2 477 0 1 358 0 2 280 1 0 235 8 7 845 0 2 106 28 0 63 1 2 102 7 0 154 chain 140725 chrY 59373566 + 27402187 27403789 L1PA3long 6157 - 749 2350 26036 368 1 0 1233 chain 60481 chrY 59373566 + 27403795 27404523 L1PA3long 6157 + 5418 6157 52590 574 2 1 26 5 17 121 chain 2778 chrY 59373566 + 27433953 27434018 LTR65 659 - 439 508 229058 15 13 17 5 0 2 5 2 0 25 chain 53369 chrY 59373566 + 27474245 27475305 MER4E1 777 + 0 770 56794 17 7 0 21 2 1 157 7 5 4 1 0 92 4 5 30 304 0 158 7 29 24 9 7 6 0 4 210 chain 16167 chrY 59373566 + 27487986 27488265 LTR39 781 - 307 588 137853 30 14 23 131 47 40 57 chain 538118 chrY 59373566 + 27515849 27521863 L1PA2 6032 + 1 6019 3128 886 0 1 838 0 1 704 0 1 1050 0 1 141 0 1 283 0 3 280 0 1 379 0 1 301 9 0 398 0 3 745 chain 36302 chrY 59373566 + 27581712 27582175 LTR15 485 - 6 479 74503 5 0 1 13 0 9 8 2 0 4 1 0 155 1 5 223 1 0 50 chain 473620 chrY 59373566 + 27588270 27593689 L1PA4 6152 - 9 5440 7926 18 0 1 1772 0 4 1144 0 1 492 4 9 1657 0 2 313 1 0 18 chain 77884 chrY 59373566 + 27594178 27595054 L1PA2 6032 - 4 881 44573 829 1 2 46 chain 92688 chrY 59373566 + 27599031 27600067 L1PA3long 6157 - 5 1048 38754 205 0 3 630 0 4 201 chain 85511 chrY 59373566 + 27677824 27678892 L1P1 4361 - 3291 4360 41341 715 19 20 136 0 1 4 1 0 193 chain 138691 chrY 59373566 + 27686520 27688109 L1PA3long 6157 - 0 1602 26367 26 0 1 141 1 0 4 0 1 676 2 1 477 0 13 262 chain 106957 chrY 59373566 + 27691695 27692928 L1PA3long 6157 + 4927 6157 34988 380 5 1 676 0 1 4 1 0 144 0 1 23 chain 491472 chrY 59373566 + 27700552 27706897 L1PA4 6152 + 0 6137 7297 200 1 0 4 0 1 136 19 20 860 17 15 307 0 24 171 0 1 46 6 7 585 0 33 660 0 5 186 1 3 234 5 11 472 0 22 316 1 0 307 3 16 118 0 1 579 315 0 344 4 5 448 chain 28702 chrY 59373566 + 27705796 27706101 AluYa5 310 - 5 310 90321 305 chain 509054 chrY 59373566 + 27746436 27752635 L1PA4 6152 - 9 6150 6239 841 4 1 189 0 1 250 0 7 217 0 3 884 0 1 468 6 5 4 0 1 100 0 1 338 2 1 4 0 1 139 2 1 214 2 1 622 1 0 4 0 1 290 24 0 718 17 0 12 29 5 243 1 0 574 chain 339985 chrY 59373566 + 27753303 27757577 L1P1 4361 - 35 4302 11896 21 1 0 154 1 0 473 3 0 745 26 0 107 2 1 4 0 1 47 2 1 170 0 1 749 1 2 295 0 2 289 0 1 45 0 3 70 8 12 237 0 1 8 0 1 635 1 11 108 0 1 72 chain 20910 chrY 59373566 + 27833301 27833532 L1PA3long 6157 - 2456 2687 123916 231 chain 211948 chrY 59373566 + 27833532 27835973 L1PA3long 6157 + 3713 6157 18366 928 1 0 949 15 9 220 1 2 186 0 8 42 0 1 99 chain 221512 chrY 59373566 + 27849921 27852652 L1PA4 6152 - 9 2876 17782 139 2 0 25 2 0 6 3 5 359 2 0 171 0 1 76 4 7 4 1 0 48 0 4 32 7 0 165 0 125 1292 3 0 140 8 25 232 0 1 10 chain 276368 chrY 59373566 + 27856438 27859401 L1HS 6032 + 3069 6032 14848 2963 chain 5474 chrY 59373566 + 27863225 27863294 LTR19B 566 - 459 528 190269 69 chain 38193 chrY 59373566 + 27870482 27870943 L1PA4 6152 + 4153 4620 71844 198 4 8 126 0 2 133 chain 55236 chrY 59373566 + 27870949 27871621 L1PA4 6152 + 4625 5305 55565 4 0 1 284 15 21 23 1 2 345 chain 70200 chrY 59373566 + 27871621 27872454 L1PA4 6152 + 5310 6143 48307 833 chain 29430 chrY 59373566 + 27872539 27872845 AluYa5 310 - 4 310 86935 306 chain 87198 chrY 59373566 + 27884014 27885077 MER11C 1089 + 7 1074 40689 402 0 3 186 0 1 475 chain 128953 chrY 59373566 + 27904476 27905931 L1PA2 6032 - 2 1459 28322 65 0 2 85 5 0 6 1 6 1293 chain 56982 chrY 59373566 + 27905940 27906591 L1P1 4361 + 3677 4328 54537 95 0 1 161 0 1 215 1 0 155 1 0 23 chain 318796 chrY 59373566 + 27909732 27913650 L1PA4 6152 + 0 6146 12639 708 11 5 69 0 1 271 0 1 175 0 1 5 1 0 169 0 9 307 0 1 193 0 1 26 1 0 196 1 2 259 0 132 252 28 2106 69 5 6 116 0 9 436 0 1 465 5 6 137 1 0 12 chain 36648 chrY 59373566 + 27958136 27958620 MER11B 1079 - 595 1079 74028 88 2 3 140 3 2 251 chain 47362 chrY 59373566 + 28022417 28022953 L1PA3long 6157 + 5620 6156 60923 536 chain 235882 chrY 59373566 + 28034567 28037605 L1P1 4361 + 5 3080 16984 117 0 14 450 0 10 142 1 0 206 1 3 67 1 0 51 0 1 169 13 14 187 1 2 294 0 1 523 0 17 37 18 9 562 0 1 4 1 0 133 0 1 60 chain 445957 chrY 59373566 + 28037612 28043222 L1PA5 6144 + 0 6140 8875 89 0 525 87 0 1 28 0 1 240 3 4 197 1 2 245 1 2 9 11 10 110 0 2 318 2 1 443 7 1 213 1 0 234 0 1 118 1 0 36 1 2 1424 1 5 244 5 6 162 26 4 297 0 6 8 0 9 5 0 1 56 0 5 136 1 0 25 5 6 315 0 2 6 13 11 29 0 1 319 0 1 138 chain 503575 chrY 59373566 + 28053766 28059947 L1PA4 6152 - 11 6152 6628 134 4 6 972 1 0 160 52 0 203 1 2 2461 0 2 238 0 1 504 2 1 23 3 1 113 5 6 77 15 14 35 0 9 597 0 1 5 1 0 118 2 3 455 chain 28241 chrY 59373566 + 28062565 28062867 AluYa5 310 - 9 310 92145 175 1 0 126 chain 26724 chrY 59373566 + 28078412 28078700 L1PA2 6032 + 5742 6030 97243 288 chain 69735 chrY 59373566 + 28082994 28083810 L1PA3long 6157 - 0 817 48502 584 0 1 232 chain 174429 chrY 59373566 + 28083816 28085790 L1PA3long 6157 + 3370 5346 21546 494 0 1 745 2 3 733 chain 86364 chrY 59373566 + 28093178 28094261 MER11C 1089 - 0 1089 41012 4 1 0 486 8 9 273 0 4 220 5 7 86 chain 38965 chrY 59373566 + 28095135 28095771 HERVK11-int 2540 - 306 942 70785 17 0 1 105 5 7 65 3 0 6 13 15 75 0 1 94 1 0 94 0 1 23 84 81 51 chain 523489 chrY 59373566 + 28105623 28111609 L1PA3long 6157 - 5 6147 4813 12 1 0 136 4 5 1047 0 1 4 1 0 641 0 26 1096 0 1 493 1 0 1641 0 2 143 0 128 766 chain 47354 chrY 59373566 + 28120881 28121467 LTR14C 587 - 0 587 60937 189 0 1 397 chain 5616 chrY 59373566 + 28144302 28144370 L1PA6 6164 + 6090 6160 188915 9 0 2 59 chain 28133 chrY 59373566 + 28157262 28157559 AluYa5 310 - 13 310 92531 297 chain 494293 chrY 59373566 + 28159861 28165991 L1PA5 6144 - 7 6130 7153 140 6 11 95 1 0 157 1 0 37 13 11 7 0 2 119 0 1 219 1 0 128 8 7 12 43 29 36 0 2 20 0 1 46 0 1 1124 0 1 258 0 1 513 11 12 265 1 0 518 0 1 461 2 1 468 1 0 1419 chain 9644 chrY 59373566 + 28168383 28168504 LTR22 571 + 0 121 162377 121 chain 3651 chrY 59373566 + 28200810 28200892 MLT1A1 405 - 93 174 212786 19 13 13 10 8 7 32 chain 155710 chrY 59373566 + 28206235 28208124 L1PA5 6144 - 2 1892 23891 8 3 0 10 10 11 286 0 1 201 1 0 248 16 15 68 1 0 49 0 1 903 0 4 85 chain 14600 chrY 59373566 + 28209241 28209416 L1P1 4361 - 33 207 142590 23 1 0 151 chain 68413 chrY 59373566 + 28212868 28213724 L1PA4 6152 + 5116 5968 49083 185 11 8 170 0 1 152 1 0 186 8 7 143 chain 38166 chrY 59373566 + 28214417 28214828 L1PA2 6032 - 377 788 71890 411 chain 32210 chrY 59373566 + 28214828 28215208 L1PA2 6032 + 5652 6032 80504 214 5 0 7 5 10 149 chain 13948 chrY 59373566 + 28217324 28218273 LTR15 485 + 0 475 144757 65 763 289 121 chain 9890 chrY 59373566 + 28219540 28219674 L1P1 4361 + 1 136 161118 10 3 4 121 chain 257615 chrY 59373566 + 28219693 28222721 L1PA4 6152 + 3105 6143 15837 65 0 1 141 0 1 668 1 2 168 0 3 7 0 1 112 1 4 1196 0 1 157 1 0 511 chain 31866 chrY 59373566 + 28237449 28237890 MER9a2 513 + 0 443 81071 12 1 2 32 0 1 198 13 31 7 18 0 160 chain 51305 chrY 59373566 + 28238579 28239325 HERVK9-int 4720 + 6 729 58105 17 55 39 62 1 0 9 1 0 20 31 26 550 chain 13347 chrY 59373566 + 28248606 28248753 L1PA2 6032 - 3 150 146897 147 chain 29731 chrY 59373566 + 28254890 28255344 LTR7B 505 + 0 495 85721 108 0 10 57 15 77 28 29 0 85 1 0 66 24 23 41 chain 22725 chrY 59373566 + 28293602 28293915 L1PA6 6164 + 5849 6160 116955 142 11 12 151 3 0 6 chain 21330 chrY 59373566 + 28318335 28318581 L1PA4 6152 - 9 255 122760 246 chain 128925 chrY 59373566 + 28328892 28330444 LTR12C 1709 + 0 1709 28325 101 3 0 5 0 3 200 0 1 4 1 0 385 0 159 253 1 0 6 2 0 107 0 4 53 4 1 427 chain 43438 chrY 59373566 + 28332407 28332968 LTR22 571 + 0 564 64885 297 0 1 172 9 11 83 chain 5646 chrY 59373566 + 28335834 28335901 MER52C 1267 - 177 244 188604 67 chain 10703 chrY 59373566 + 28355436 28355559 L1PA4 6152 + 6025 6148 157398 123 chain 40571 chrY 59373566 + 28357973 28358502 MER41A 554 + 0 546 68477 197 0 1 174 2 1 17 5 17 61 0 5 73 chain 201859 chrY 59373566 + 28373458 28375666 L1PA2 6032 + 3823 6032 19080 53 0 1 2155 chain 23210 chrY 59373566 + 28387835 28388111 AluSp 311 + 23 299 114641 276 chain 46078 chrY 59373566 + 28388503 28389090 MER41B 635 + 10 609 61966 43 0 1 38 1 0 36 0 1 328 1 9 34 0 3 106 chain 21289 chrY 59373566 + 28406158 28406561 L1PA14 3548 + 3067 3454 122905 42 9 5 17 2 0 6 1 0 60 24 0 8 0 23 58 4 5 18 0 1 22 1 0 9 4 0 36 47 42 35 chain 368848 chrY 59373566 + 28432178 28436525 L1P1 4361 + 1 4341 11125 215 5 1 357 1 0 118 7 0 342 1 0 266 0 1 4 9 8 881 0 4 1056 0 4 258 0 1 634 1 0 154 1 0 23 2 1 12 chain 3368 chrY 59373566 + 28447545 28447619 MER58A 224 + 4 80 217710 15 6 7 17 4 6 26 1 0 5 chain 106726 chrY 59373566 + 28457023 28458567 L1PA4 6152 + 4922 6152 35053 364 2 1 70 313 0 795 chain 27722 chrY 59373566 + 28457474 28457772 AluYa5 310 + 8 305 93960 89 1 0 208 chain 28810 chrY 59373566 + 28461719 28462022 AluYa5 310 - 7 310 89840 303 chain 523655 chrY 59373566 + 28485886 28492159 L1PA3long 6157 + 4 6142 4797 149 0 1 171 6 7 449 0 128 137 1 0 528 0 5 785 0 69 930 2 1 1946 0 4 14 343 0 84 0 1 411 0 1 317 chain 30174 chrY 59373566 + 28491015 28491333 AluYb8 318 + 0 318 84255 318 chain 27045 chrY 59373566 + 28492932 28493233 AluYf4 310 - 8 310 96133 95 0 1 206 chain 7889 chrY 59373566 + 28515376 28515468 L1PA4 6152 - 102 194 171735 92 chain 21251 chrY 59373566 + 28531209 28531500 AluY 311 + 10 302 123014 37 5 10 75 11 12 146 5 0 12 chain 45656 chrY 59373566 + 28535012 28535540 L1PA5 6144 - 7 535 62347 528 chain 29517 chrY 59373566 + 28553712 28554020 AluYf4 310 + 0 308 86579 308 chain 4771 chrY 59373566 + 28557218 28557293 MADE1 96 - 8 96 197673 26 8 21 41 chain 10750 chrY 59373566 + 28607208 28607351 L1PA15 4387 - 786 930 157198 22 0 3 6 2 0 113 chain 61365 chrY 59373566 + 28638922 28639613 L1PA3long 6157 - 0 692 52167 338 0 1 353 chain 21401 chrY 59373566 + 28670481 28670759 L1PA5 6144 + 5864 6143 122505 18 3 5 5 2 0 239 1 2 10 chain 88334 chrY 59373566 + 28675386 28676432 L1PA5 6144 - 0 1047 40249 147 2 0 6 7 9 464 6 7 414 chain 28975 chrY 59373566 + 28724174 28724475 AluYa5 310 - 9 310 89110 301 chain 519378 chrY 59373566 + 28747936 28754044 L1PA3long 6157 + 0 6149 5224 153 1 13 54 25 19 203 0 13 71 4 0 52 0 1 291 6 7 620 0 1 827 0 1 362 3 1 420 4 5 1181 0 1 30 0 2 29 0 4 320 0 1 335 0 13 788 0 1 246 0 1 83 chain 11522 chrY 59373566 + 28773814 28774012 MER30 238 - 8 238 154206 40 15 12 49 14 31 60 2 20 18 chain 146494 chrY 59373566 + 58997790 58999578 L1P1 4361 + 2550 4341 25093 141 0 3 496 8 7 46 8 9 348 1 0 25 0 5 108 1 0 413 1 0 154 1 0 23 2 1 12 chain 115810 chrY 59373566 + 59000002 59001381 L1PA4 6152 + 4774 6152 32524 260 10 9 267 4 0 230 0 3 403 0 1 205 chain 14341 chrY 59373566 + 59028889 59029048 L1PA3long 6157 - 4 163 143420 159 chain 294620 chrY 59373566 + 59033288 59036498 L1PA2 6032 - 10 3220 13723 140 0 1 619 1 0 2450 chain 8048 chrY 59373566 + 59045773 59045871 L1PA8 5853 - 0 97 170769 93 1 0 4 chain 39037 chrY 59373566 + 59050072 59050565 L1PA8 5853 - 3 490 70681 89 2 1 19 2 1 52 1 0 6 1 0 74 2 0 44 1 0 72 0 1 128 chain 13083 chrY 59373566 + 59055207 59055417 L1MA3 4352 + 106 313 147907 35 2 1 8 1 0 20 16 15 128 chain 513460 chrY 59373566 + 59055473 59061491 L1PA6 6164 - 19 6042 5839 29 0 1 1072 1 0 618 20 1 100 14 0 627 0 1 166 1 0 265 0 1 74 0 1 1202 0 17 15 0 1 499 0 5 458 0 7 332 1 6 235 1 2 288 chain 85446 chrY 59373566 + 59072680 59073706 MER11A 1151 + 0 1151 41365 86 0 91 22 2 0 95 0 2 92 0 1 290 0 1 90 3 0 38 0 1 12 5 38 172 0 1 119 chain 168000 chrY 59373566 + 59073722 59075941 L1PA10 4194 + 634 2891 22284 49 9 8 11 0 9 8 9 0 392 1 0 146 0 3 30 0 1 21 6 11 511 0 3 385 0 4 20 12 16 264 2 1 5 0 15 81 9 11 37 3 7 208 chain 17277 chrY 59373566 + 59082735 59082999 L1PA16 3655 + 3378 3619 134841 200 36 18 7 5 0 16 chain 33521 chrY 59373566 + 59094053 59094507 L1PA16 3655 - 237 685 78367 126 6 4 83 2 1 108 10 4 79 0 3 40 chain 36043 chrY 59373566 + 59095328 59095854 L1PA16 3655 + 3047 3563 74843 105 6 0 43 3 1 5 1 0 89 2 0 43 4 0 45 0 6 107 16 15 57 chain 78352 chrY 59373566 + 59119473 59120318 L1PA3long 6157 - 1 846 44350 845 chain 2624 chrY 59373566 + 59136291 59136394 LTR14B 630 - 394 452 231387 23 57 14 5 2 0 16 chain 7222 chrY 59373566 + 59141320 59141423 L1PA13 3608 - 165 266 175930 41 8 6 54 chain 520700 chrY 59373566 + 59141467 59147637 L1PA6 6164 + 0 6161 5080 369 0 8 11 16 15 96 13 12 123 0 1 307 0 6 692 1 0 195 1 0 18 0 5 476 22 8 655 0 1 69 0 1 19 2 1 97 2 0 4 0 1 317 0 4 851 0 4 58 20 1 1736 chain 4965 chrY 59373566 + 59162506 59162563 MSTB 430 + 358 415 195529 57 chain 18826 chrY 59373566 + 59168008 59168364 THE1B 368 + 0 368 130587 47 32 39 20 16 17 46 5 4 5 0 1 5 1 0 14 0 3 7 4 8 16 1 0 7 5 4 125 chain 33560 chrY 59373566 + 59168583 59169034 L1PA11 4918 - 474 920 78305 34 8 7 9 2 1 63 3 0 332 chain 28733 chrY 59373566 + 59170862 59171166 AluYa5 310 - 6 310 90193 304 chain 24608 chrY 59373566 + 59173503 59173791 AluSp 311 - 13 301 106947 288 chain 21942 chrY 59373566 + 59174508 59174851 THE1B 368 + 0 368 120451 5 0 1 38 5 20 108 1 0 26 35 45 125 chain 117215 chrY 59373566 + 59174851 59176315 THE1B-int 1605 + 0 1605 32050 430 0 25 298 19 133 74 0 1 379 0 1 264 chain 328762 chrY 59373566 + 59184333 59188088 L1PA5 6144 - 14 3774 12245 499 1 0 14 1 0 12 2 1 4 1 0 116 0 10 183 1 0 633 1 0 135 0 1 590 0 1 145 1 0 284 1 2 211 1 0 919 chain 69679 chrY 59373566 + 59197871 59198973 LTR12D 1347 + 0 1347 48534 182 43 44 72 1 38 30 38 33 49 0 1 87 0 31 15 0 78 34 0 41 103 30 52 119 23 0 13 7 1 16 10 41 144 0 33 22 3 7 61 chain 40656 chrY 59373566 + 59201272 59201762 LTR3B_ 500 - 0 494 68359 94 0 2 100 0 1 141 0 1 155 chain 18951 chrY 59373566 + 59212117 59212341 MER41A 554 - 330 554 130223 224 chain 156981 chrY 59373566 + 59234190 59235900 L1PA3long 6157 - 1148 2862 23725 651 0 4 1059 chain 102695 chrY 59373566 + 59235900 59237034 L1PA3long 6157 + 5021 6157 36028 637 0 1 355 0 1 142 chain 111841 chrY 59373566 + 59239953 59241262 SVA_D 2077 - 9 2071 33706 514 0 741 47 41 41 539 1 21 140 8 0 19 chain 543024 chrY 59373566 + 59245033 59251437 L1PA7 6471 - 2 6471 2337 154 1 0 6 1 2 520 39 25 59 1 0 79 0 3 667 1 0 84 0 13 1356 2 0 74 0 1 342 0 1 186 1 8 15 0 1 232 0 1 1207 0 1 6 0 50 162 0 4 740 0 1 469 chain 39557 chrY 59373566 + 59258084 59258556 MER4A1 472 - 0 472 69951 10 0 1 4 1 0 457 chain 20413 chrY 59373566 + 59259804 59260040 L1PA7 6471 + 6224 6461 125856 91 0 1 145 chain 28696 chrY 59373566 + 59261855 59262236 LTR23 429 - 49 429 90341 101 1 0 69 0 1 95 14 13 21 1 0 12 0 1 67 chain 533958 chrY 59373566 + 59263387 59269493 L1PA5 6144 - 5 6141 3708 848 1 0 140 1 6 856 1 3 286 0 4 707 1 0 160 0 5 257 38 38 1147 0 1 446 1 0 201 0 1 275 0 1 623 1 15 116 chain 8962 chrY 59373566 + 59269552 59269698 L1M3 994 + 172 318 165811 28 17 18 77 1 0 23 chain 7046 chrY 59373566 + 59289102 59289206 LTR7B 505 + 402 505 177145 39 15 14 50 chain 46690 chrY 59373566 + 59290805 59291495 LTR30 714 - 0 714 61466 23 1 0 30 0 1 6 6 8 11 7 6 5 1 0 54 0 1 5 9 10 18 13 12 63 7 18 14 0 1 5 0 1 19 3 4 143 1 6 184 0 4 62 chain 3426 chrY 59373566 + 59294078 59294116 U3 216 - 178 216 216635 38 chain 72205 chrY 59373566 + 59296581 59297548 MER11A 1151 - 16 997 47372 144 9 10 60 0 1 34 18 0 24 8 41 133 7 8 136 5 6 50 1 0 44 0 1 149 4 0 66 1 0 74 chain 35520 chrY 59373566 + 59301622 59302075 LTR2 463 - 8 463 75523 80 14 15 94 4 5 261 chain 516687 chrY 59373566 + 59302086 59309123 HERVE_a-int 7009 - 3 6853 5518 7 1 0 8 2 0 25 32 24 15 4 2 34 2 0 24 1 0 13 3 1 6 1 0 32 1 0 25 3 1 54 3 0 26 4 0 9 2 1 55 7 5 27 1 0 4 1 0 43 9 8 17 1 0 37 1 0 7 2 0 5 1 0 16 2 1 9 1 0 31 1 0 47 1 0 134 8 7 71 4 3 11 1 0 20 2 0 57 1 0 5 1 0 12 3 2 101 2 0 17 1 2 240 1 0 10 2 1 86 1 0 29 1 0 36 1 0 7 1 0 74 38 35 114 9 0 229 0 1 88 5 7 546 0 5 585 2 1 31 0 2 259 1 0 140 0 1 24 1 0 54 0 1 275 1 0 88 1 0 405 9 8 160 2 1 36 2 1 14 2 1 143 1 0 8 7 5 17 13 8 29 6 4 25 2 1 12 6 7 15 1 0 11 1 0 13 0 1 4 1 0 32 2 1 10 1 0 23 2 1 17 1 0 24 1 0 43 2 1 32 2 1 8 1 0 36 1 0 62 1 0 29 0 1 8 1 0 27 15 14 20 26 23 9 1 0 12 1 0 20 1 0 18 1 0 116 1 0 16 1 0 19 4 3 58 3 1 56 1 0 5 1 0 5 1 0 10 1 0 7 8 6 20 2 1 16 1 0 6 2 1 19 4 0 11 1 0 3 1 0 19 1 0 21 1 0 52 1 0 12 2 0 42 1 0 13 0 4 15 2 1 73 9 7 13 15 14 67 1 0 27 2 0 55 1 0 10 1 0 33 2 1 15 1 0 12 1 0 99 1 0 34 1 0 53 1 0 21 1 0 44 1 0 25 4 2 34 28 0 19 1 0 4 1 0 4 2 1 6 1 0 7 1 0 4 15 10 14 1 0 8 1 0 8 1 0 3 1 0 22 15 11 66 1 0 6 1 0 29 chain 17536 chrY 59373566 + 59309879 59310111 LTR2 463 - 0 233 134166 87 13 14 132 chain 40393 chrY 59373566 + 59315167 59315703 THE1D-int 1627 + 0 537 68750 141 0 2 163 13 12 219 chain 19927 chrY 59373566 + 59320611 59320951 THE1D 372 + 18 372 127369 45 0 1 38 1 0 33 80 94 143 chain 3570 chrY 59373566 + 59350389 59350463 L1MC 810 + 240 313 214125 34 17 16 23 chain 109268 chrY 59373566 + 59351147 59352518 L1P1 4361 + 15 1405 34379 107 0 14 15 9 10 15 13 12 37 1 0 64 1 0 48 7 6 193 1 0 701 1 0 44 0 10 114 chain 42703 chr19 59128983 + 75142 75650 L1PA6 6164 - 2 512 65773 10 0 1 4 0 1 494 chain 5065 chr19 59128983 + 75656 75717 L1P1 4361 + 2962 3023 194479 61 chain 6201 chr19 59128983 + 88026 88095 LTR12F 595 - 115 184 183578 69 chain 20756 chr19 59128983 + 106010 106244 L1PA4 6152 + 5909 6143 124773 234 chain 28633 chr19 59128983 + 113779 114120 L1PA7 6471 - 6 349 90588 7 0 2 334 chain 31069 chr19 59128983 + 114120 114492 L1PA7 6471 + 5732 6108 82399 354 0 4 18 chain 96283 chr19 59128983 + 115439 116489 L1PA2 6032 - 0 1051 37735 916 0 1 134 chain 165763 chr19 59128983 + 116491 118286 L1PA2 6032 + 3187 4982 22541 1795 chain 4177 chr19 59128983 + 129547 129594 L1PA6 6164 - 5 52 204872 47 chain 22979 chr19 59128983 + 131037 131303 L1PA5 6144 - 2 272 115725 53 0 4 213 chain 23052 chr19 59128983 + 139859 140168 L1PA8A 6298 + 5870 6175 115384 129 9 9 126 4 0 41 chain 8592 chr19 59128983 + 141297 141395 L1PA5 6144 + 6046 6144 167768 98 chain 65665 chr19 59128983 + 143304 144026 L1PA4 6152 - 178 900 50263 722 chain 14586 chr19 59128983 + 144026 144192 L1PA4 6152 + 5975 6141 142641 166 chain 512263 chr19 59128983 + 146476 152899 L1PA7 6471 + 0 6468 5945 196 3 2 63 2 3 148 11 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 3 1 12 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 2 95 0 1 248 0 5 131 0 35 125 0 2 55 2 0 191 1 2 457 1 0 256 0 1 12 1 0 17 7 11 423 1 0 251 0 1 138 2 0 9 chain 19680 chr19 59128983 + 167915 168452 L2c 621 - 6 521 128160 9 4 0 12 11 13 53 18 12 113 1 0 60 9 0 9 122 129 16 15 16 35 26 14 24 chain 14597 chr19 59128983 + 171240 171600 THE1B 368 - 0 366 142605 47 24 23 58 84 89 34 36 38 77 chain 25169 chr19 59128983 + 208823 209224 MER1A 529 - 39 439 103913 19 27 28 137 10 12 170 9 10 14 5 0 10 chain 85432 chr19 59128983 + 219410 220473 MER11B 1079 + 0 1079 41371 220 0 5 91 1 18 49 0 1 388 8 2 290 5 4 11 chain 3843 chr19 59128983 + 250852 250895 MER72 723 + 680 723 209742 43 chain 11622 chr19 59128983 + 261897 262048 LTR5B 1012 + 860 1012 153802 15 3 4 10 2 0 114 0 2 7 chain 49006 chr19 59128983 + 264917 265507 LTR10C 591 + 0 591 59745 192 0 1 398 chain 23774 chr19 59128983 + 267691 267977 AluSp 311 + 2 294 111629 227 4 10 55 chain 29092 chr19 59128983 + 385098 385922 HERVK-int 6823 + 5916 6597 88585 92 1 0 49 3 0 5 1 0 7 1 0 3 1 0 70 2 0 15 1 0 21 17 11 11 1 0 20 2 0 3 1 0 13 172 101 9 2 0 12 1 0 14 3 1 11 2 0 30 20 13 10 10 6 10 11 5 7 1 0 8 1 0 5 3 0 26 1 0 4 1 0 12 35 26 15 2 1 7 1 0 7 5 0 6 9 4 11 chain 72599 chr19 59128983 + 386679 387637 LTR5_Hs 974 + 0 974 47219 110 6 14 161 0 1 166 0 2 13 0 1 177 12 11 163 8 15 19 20 18 103 chain 26381 chr19 59128983 + 479044 479380 LTR3B_ 500 + 0 335 98494 50 2 1 284 chain 36522 chr19 59128983 + 487752 488211 LTR2 463 + 0 463 74213 61 0 3 298 12 13 88 chain 45502 chr19 59128983 + 505484 506438 LTR10C 591 - 0 591 62493 191 24 0 270 39 15 11 312 0 73 3 0 31 chain 38298 chr19 59128983 + 516177 516981 HERV1_LTRc 486 - 14 486 71710 178 5 0 7 315 0 72 13 0 28 0 2 92 1 0 93 chain 24463 chr19 59128983 + 561360 561656 AluSx3 311 + 2 300 107743 111 0 2 185 chain 5770 chr19 59128983 + 562157 562228 LTR22 571 - 493 564 187441 71 chain 23447 chr19 59128983 + 606889 607175 AluSp 311 + 0 288 113392 52 2 1 158 0 1 68 0 2 6 chain 26099 chr19 59128983 + 654364 654669 AluSx1 309 + 4 309 99625 305 chain 67488 chr19 59128983 + 668598 669599 MER11A 1151 + 0 1151 49458 55 0 99 22 8 0 24 1 0 91 7 3 32 0 2 35 1 0 4 0 1 20 0 1 51 5 6 92 0 1 145 0 1 28 13 30 65 20 54 48 19 28 29 1 0 16 2 3 8 0 1 37 1 0 104 3 1 14 chain 20463 chr19 59128983 + 684478 684747 AluSc 308 + 6 271 125721 14 4 0 111 1 0 74 7 8 58 chain 19316 chr19 59128983 + 690068 690292 AluSc 308 + 38 262 129191 224 chain 25719 chr19 59128983 + 706165 706475 AluSp 311 - 1 311 101222 310 chain 12491 chr19 59128983 + 706873 707018 AluSp 311 + 135 280 150282 145 chain 22173 chr19 59128983 + 784995 785251 AluSp 311 + 23 294 119478 13 0 1 116 0 14 127 chain 5797 chr19 59128983 + 837040 837119 FLAM_A 137 + 52 130 187174 58 0 1 6 2 0 13 chain 22248 chr19 59128983 + 864840 865135 AluY 311 + 0 298 119126 9 1 0 123 0 1 55 0 3 46 9 4 7 0 5 45 chain 9723 chr19 59128983 + 893483 893585 U6 107 + 0 102 161969 102 chain 19385 chr19 59128983 + 907939 908167 AluSc 308 + 27 256 128990 90 0 1 138 chain 24206 chr19 59128983 + 910842 911127 AluY 311 + 5 289 109176 95 6 5 184 chain 14467 chr19 59128983 + 915877 916032 L1PA3long 6157 + 6002 6157 142996 155 chain 18967 chr19 59128983 + 936571 936816 AluSc8 310 + 11 260 130191 114 1 4 78 9 10 43 chain 23142 chr19 59128983 + 958151 958445 AluY 311 + 0 300 114925 76 0 6 10 5 6 77 3 2 123 chain 4603 chr19 59128983 + 969132 969240 L1MA3 4352 - 0 100 199585 21 3 0 3 1 0 15 3 2 12 0 1 10 1 0 5 2 1 23 2 0 7 chain 10178 chr19 59128983 + 1021520 1021627 U6 107 + 0 107 159722 107 chain 21256 chr19 59128983 + 1092422 1092693 AluY 311 + 4 289 123002 128 0 1 6 9 22 128 chain 20055 chr19 59128983 + 1118062 1118357 AluSp 311 + 10 301 126953 45 32 28 59 0 1 125 2 1 32 chain 16885 chr19 59128983 + 1120677 1120874 AluSc5 308 - 20 217 135880 197 chain 23688 chr19 59128983 + 1179380 1179666 AluSg7 307 - 22 305 112105 22 11 8 253 chain 29100 chr19 59128983 + 1194870 1195188 AluYb8 318 - 0 318 88553 318 chain 22168 chr19 59128983 + 1210606 1210872 AluSp 311 + 20 293 119505 59 0 7 207 chain 24935 chr19 59128983 + 1297796 1298098 AluSq2 311 + 8 311 105139 125 0 1 177 chain 6994 chr19 59128983 + 1383360 1383433 tRNA-Phe-TTY 73 - 0 73 177512 73 chain 7139 chr19 59128983 + 1383561 1383635 tRNA-Asn-AAC 74 + 0 74 176481 74 chain 24750 chr19 59128983 + 1385237 1385533 AluSp 311 + 6 303 106173 167 0 1 129 chain 17596 chr19 59128983 + 1493812 1494080 AluSx 319 + 8 287 134008 126 22 32 49 23 24 48 chain 123603 chr19 59128983 + 1498617 1500000 SVA_D 2077 - 4 1778 29842 531 0 225 247 0 50 35 0 38 27 1 0 8 1 0 16 0 40 222 0 40 295 chain 25009 chr19 59128983 + 1504681 1505031 L1PA8 5853 + 5506 5853 104740 58 1 0 46 2 0 72 8 7 51 2 1 19 1 0 65 6 9 19 chain 3062 chr19 59128983 + 1547055 1547089 L1PA6 6164 - 7 41 223776 34 chain 2856 chr19 59128983 + 1596949 1596980 MLT1B 390 + 349 380 227737 31 chain 23662 chr19 59128983 + 1603319 1603605 AluY 311 + 0 282 112237 123 1 0 3 1 0 48 3 1 107 chain 22169 chr19 59128983 + 1640543 1640817 AluY 311 + 8 297 119498 123 1 2 8 0 13 29 0 1 113 chain 6615 chr19 59128983 + 1656391 1656470 FLAM_A 137 + 47 126 180343 79 chain 10762 chr19 59128983 + 1692289 1692417 AluSx 319 + 4 132 157144 128 chain 24098 chr19 59128983 + 1695489 1695790 THE1B 368 + 1 304 109754 199 0 2 102 chain 23330 chr19 59128983 + 1739665 1739971 AluY 311 + 3 305 114024 128 1 2 10 3 0 7 0 3 146 5 0 6 chain 20978 chr19 59128983 + 1888863 1889117 AluSg7 307 - 43 298 123999 137 0 1 117 chain 24032 chr19 59128983 + 1889653 1889937 AluY 311 + 2 287 110153 130 0 1 154 chain 21227 chr19 59128983 + 1890620 1890909 AluSp 311 - 18 301 123118 89 19 0 35 0 13 146 chain 14156 chr19 59128983 + 1926181 1926349 AluSc 308 + 82 250 144020 168 chain 4796 chr19 59128983 + 1965024 1965081 Tigger1 2417 + 1294 1351 197407 57 chain 4090 chr19 59128983 + 1973826 1973874 MSTD 398 - 2 50 206078 48 chain 20553 chr19 59128983 + 2001216 2001506 AluSc8 310 + 2 299 125464 51 3 4 73 2 5 20 0 4 104 9 8 28 chain 3917 chr19 59128983 + 2004596 2004639 MER4A1_ 611 + 554 597 208601 43 chain 5068 chr19 59128983 + 2029361 2029458 AluJr 308 - 209 308 194444 42 26 28 29 chain 24224 chr19 59128983 + 2036089 2036392 AluSp 311 + 5 305 109063 270 0 2 10 2 0 12 3 0 6 chain 21845 chr19 59128983 + 2076156 2076434 AluSc8 310 + 11 288 120834 64 4 0 57 0 3 153 chain 44440 chr19 59128983 + 2105223 2105734 MER9a1 513 + 0 513 63647 362 0 2 149 chain 24714 chr19 59128983 + 2143812 2144103 AluSp 311 + 8 300 106360 133 0 1 158 chain 18321 chr19 59128983 + 2158751 2158982 LTR8 732 - 460 693 132015 90 0 2 141 chain 26140 chr19 59128983 + 2212461 2212810 LTR71B 605 - 245 605 99443 36 0 13 74 1 0 85 2 0 6 3 0 5 2 6 135 chain 4783 chr19 59128983 + 2259479 2259538 L1PB4 2604 - 118 177 197535 59 chain 3811 chr19 59128983 + 2331864 2331909 MER58A 224 - 133 178 210221 45 chain 18375 chr19 59128983 + 2370218 2370439 AluY 311 + 83 303 131861 42 1 0 178 chain 19576 chr19 59128983 + 2395441 2395721 AluSp 311 + 0 290 128441 25 1 0 86 18 32 44 3 0 103 chain 24309 chr19 59128983 + 2440188 2440479 AluSp 311 - 12 303 108607 291 chain 21825 chr19 59128983 + 2458652 2458928 AluSg7 307 - 14 296 120922 30 1 0 76 0 6 50 1 2 118 chain 23537 chr19 59128983 + 2462579 2462894 AluSq2 311 + 0 311 112923 33 0 2 84 1 0 6 8 3 183 chain 4956 chr19 59128983 + 2474289 2474371 MER96B 391 + 99 179 195637 7 1 0 23 6 5 45 chain 22385 chr19 59128983 + 2549291 2549580 AluSg7 307 - 14 301 118563 13 9 5 39 0 1 108 0 1 120 chain 5226 chr19 59128983 + 2552321 2552377 MER1A 529 + 255 311 192766 56 chain 3039 chr19 59128983 + 2619268 2619304 MER58A 224 + 47 83 224218 36 chain 20406 chr19 59128983 + 2619934 2620207 AluSp 311 + 25 287 125874 31 4 0 156 10 3 72 chain 3367 chr19 59128983 + 2668858 2668941 MER20 218 - 90 187 217721 15 34 48 34 chain 25239 chr19 59128983 + 2705262 2705547 AluSp 311 + 11 296 103537 285 chain 23693 chr19 59128983 + 2706872 2707156 AluSp 311 + 0 286 112063 64 1 3 219 chain 3127 chr19 59128983 + 2712763 2712801 MSTA 426 + 388 426 222400 38 chain 23183 chr19 59128983 + 2725049 2725291 AluYb8 318 + 76 318 114761 242 chain 21138 chr19 59128983 + 2837196 2837461 AluSp 311 + 37 303 123417 103 0 1 35 0 1 77 1 0 49 chain 12143 chr19 59128983 + 2847350 2847493 L1PA4 6152 + 6000 6143 151635 143 chain 7853 chr19 59128983 + 2863772 2863863 LTR14 556 + 465 556 171975 91 chain 41068 chr19 59128983 + 2865337 2865812 LTR15 485 + 0 475 67814 475 chain 84429 chr19 59128983 + 2871673 2872674 LTR13 1007 - 0 1007 41745 94 0 5 95 1 2 385 1 0 40 0 1 385 chain 23946 chr19 59128983 + 2878386 2878686 AluY 311 + 0 295 110643 94 1 4 25 12 4 168 chain 6309 chr19 59128983 + 2901814 2901992 LTR7B 505 - 122 240 182724 53 19 18 24 58 0 4 1 0 19 chain 23241 chr19 59128983 + 2921194 2921475 AluYc 301 + 2 284 114488 118 0 2 148 2 1 13 chain 10622 chr19 59128983 + 2951252 2951758 MER30 238 - 4 201 157722 38 1 4 58 342 29 45 1 2 21 chain 23590 chr19 59128983 + 2954583 2954853 AluSp 311 + 41 311 112629 270 chain 4524 chr19 59128983 + 2966064 2966117 MER65A 464 + 7 60 200511 53 chain 3335 chr19 59128983 + 2969517 2969557 LTR26B 539 + 0 40 218325 40 chain 24538 chr19 59128983 + 3067233 3067533 AluSp 311 + 0 300 107320 9 0 4 276 4 0 11 chain 25484 chr19 59128983 + 3086238 3086549 AluYf5 307 - 2 307 102300 8 5 0 33 6 4 154 1 2 104 chain 15509 chr19 59128983 + 3153000 3153181 LTR12F 595 + 402 583 139862 181 chain 25378 chr19 59128983 + 3159335 3159630 AluSp 311 - 3 301 102794 166 0 1 98 0 2 31 chain 35641 chr19 59128983 + 3166803 3167542 L1PA6 6164 - 2 430 75353 43 1 0 321 310 0 64 chain 38549 chr19 59128983 + 3175893 3176367 LTR3B_ 500 - 18 500 71368 73 0 2 146 0 2 5 0 4 250 chain 4920 chr19 59128983 + 3248066 3248134 L1MB3 1562 - 10 77 196049 28 1 0 39 chain 4896 chr19 59128983 + 3260007 3260073 MER33 330 - 76 140 196304 7 1 0 43 1 0 14 chain 23793 chr19 59128983 + 3280308 3280591 AluSq2 311 + 22 302 111514 112 3 0 168 chain 2779 chr19 59128983 + 3328817 3328957 MER58A 224 - 37 175 229055 22 94 92 24 chain 5863 chr19 59128983 + 3343849 3343920 MER20 218 - 145 218 186558 57 0 2 14 chain 23977 chr19 59128983 + 3435833 3436125 AluSp 311 - 21 311 110462 162 3 1 127 chain 47227 chr19 59128983 + 3498221 3499182 PABL_A 660 + 1 660 61023 38 0 3 136 307 0 37 1 46 7 1 0 17 0 1 37 42 0 117 1 0 220 chain 2857 chr19 59128983 + 3571456 3571490 L1MB7 1623 - 197 231 227699 34 chain 24515 chr19 59128983 + 3594079 3594371 AluSp 311 - 23 310 107473 159 5 0 128 chain 23650 chr19 59128983 + 3596939 3597238 AluSp 311 - 14 310 112309 155 13 10 131 chain 22836 chr19 59128983 + 3602792 3603048 AluY 311 + 40 297 116411 92 0 1 164 chain 24829 chr19 59128983 + 3660104 3660390 AluY 311 + 8 295 105728 124 0 1 162 chain 2967 chr19 59128983 + 3685819 3685858 MER58A 224 + 142 181 225736 39 chain 17801 chr19 59128983 + 3874956 3875197 LTR10D 510 + 271 510 133403 140 11 9 35 0 1 5 1 0 49 chain 16188 chr19 59128983 + 3913881 3914518 THE1B 368 - 1 346 137795 62 0 4 9 410 115 8 1 0 147 chain 23429 chr19 59128983 + 3974022 3974308 AluY 311 + 11 297 113479 17 1 0 92 1 0 12 0 1 136 2 1 5 0 2 20 chain 59608 chr19 59128983 + 3998782 3999460 SVA_B 1603 + 886 1603 53046 35 4 0 29 0 40 157 1 0 154 0 4 298 chain 22095 chr19 59128983 + 4026123 4026419 AluSc 308 - 1 298 119809 30 7 9 211 11 10 37 chain 23534 chr19 59128983 + 4183629 4183910 AluSp 311 + 1 287 112934 147 0 6 76 1 0 57 chain 23589 chr19 59128983 + 4243815 4244117 AluSp 311 + 10 309 112637 56 13 7 203 0 3 30 chain 5834 chr19 59128983 + 4245788 4245862 MER41D 557 - 438 512 186833 74 chain 20772 chr19 59128983 + 4246221 4246481 MER41A 554 + 294 554 124709 260 chain 24640 chr19 59128983 + 4252313 4252605 AluY 311 + 0 287 106779 123 8 3 161 chain 19305 chr19 59128983 + 4255757 4256006 AluSq2 311 + 36 286 129226 97 7 8 145 chain 10588 chr19 59128983 + 4352218 4352347 MER85 139 - 0 139 157881 40 0 10 89 chain 23427 chr19 59128983 + 4459561 4459855 AluY 311 + 9 298 113488 116 6 1 172 chain 19240 chr19 59128983 + 4462498 4462727 AluY 311 + 70 300 129410 62 0 1 167 chain 24658 chr19 59128983 + 4486969 4487260 AluSg7 307 - 16 305 106683 159 2 0 130 chain 22620 chr19 59128983 + 4490793 4491097 AluSp 311 - 9 302 117486 8 3 0 13 13 4 151 0 1 116 chain 22964 chr19 59128983 + 4514473 4514740 AluY 311 + 18 283 115786 105 2 0 9 0 1 77 1 0 73 chain 23869 chr19 59128983 + 4551561 4551849 AluSp 311 + 0 292 111086 64 0 2 209 0 2 15 chain 23700 chr19 59128983 + 4604453 4604724 AluY 311 + 17 289 112033 115 0 1 156 chain 4405 chr19 59128983 + 4608406 4608463 MLT1C 463 - 358 415 201879 57 chain 24399 chr19 59128983 + 4623901 4624196 AluSp 311 - 9 303 108080 72 1 0 222 chain 16921 chr19 59128983 + 4631931 4632221 THE1D 372 - 47 372 135791 32 2 4 43 9 19 5 1 0 13 23 37 97 4 14 61 chain 10763 chr19 59128983 + 4659100 4659231 AluJb 308 - 21 152 157138 131 chain 3424 chr19 59128983 + 4724081 4724119 tRNA-Gly-GGA 38 + 0 38 216711 38 chain 6209 chr19 59128983 + 4724646 4724719 tRNA-Val-GTG 73 - 0 73 183515 73 chain 24018 chr19 59128983 + 4726358 4726629 AluY 311 + 1 298 110222 136 0 26 135 chain 3190 chr19 59128983 + 4802277 4802316 FLAM_A 137 + 93 132 221105 39 chain 25129 chr19 59128983 + 4821656 4821945 AluSp 311 - 12 301 104131 289 chain 25275 chr19 59128983 + 4827485 4827788 AluY 311 + 0 301 103342 36 3 0 96 0 1 168 chain 14692 chr19 59128983 + 4836987 4837160 AluY 311 + 83 257 142288 49 0 1 124 chain 24485 chr19 59128983 + 4841638 4841946 AluY 311 + 8 311 107627 24 1 0 42 1 0 49 3 1 180 1 0 7 chain 6619 chr19 59128983 + 4846725 4846880 MLT1B 390 + 175 339 180314 28 45 40 21 7 21 54 chain 8640 chr19 59128983 + 4859138 4859247 MER58A 224 - 67 177 167539 100 0 1 9 chain 10871 chr19 59128983 + 4894111 4894241 AluY 311 + 5 134 156693 113 1 0 16 chain 4020 chr19 59128983 + 4895918 4895968 MER20 218 - 132 182 207079 50 chain 23568 chr19 59128983 + 4899049 4899333 AluY 311 + 10 292 112753 103 9 6 13 0 1 159 chain 7804 chr19 59128983 + 4905828 4905910 MER30 238 + 156 238 172288 82 chain 34567 chr19 59128983 + 4987226 4987683 LTR19A 502 - 0 496 76796 31 10 11 147 1 2 101 0 37 104 0 1 24 1 0 38 chain 32529 chr19 59128983 + 5158097 5158875 LTR12F 595 - 0 595 79978 49 332 0 70 1 4 90 1 2 4 0 1 24 0 64 52 0 66 25 0 2 30 0 12 100 chain 397733 chr19 59128983 + 5160554 5165387 HERV9-int 5642 - 803 5642 10178 5 0 2 5 0 3 53 1 0 141 1 5 104 0 4 232 5 8 197 6 10 178 35 0 26 0 11 7 0 7 169 0 3 628 0 1 4 2 1 830 3 4 532 0 1 11 0 1 28 0 1 383 3 0 109 9 10 15 13 9 255 2 0 95 1 10 25 6 0 137 0 2 577 chain 30185 chr19 59128983 + 5192567 5193299 MER41A 554 - 130 554 84233 52 0 1 66 0 1 172 349 39 93 chain 3426 chr19 59128983 + 5318501 5318542 MIRb 242 + 97 138 216638 41 chain 15614 chr19 59128983 + 5351101 5351387 THE1D 372 - 43 339 139536 80 25 0 9 23 65 67 0 1 43 15 7 24 chain 26587 chr19 59128983 + 5365255 5365550 AluYk4 311 - 16 311 97705 295 chain 23688 chr19 59128983 + 5410753 5411030 AluSp 311 - 25 301 112099 178 1 0 98 chain 9043 chr19 59128983 + 5411607 5411725 L1MB7 1623 + 1080 1196 165358 105 2 0 11 chain 44403 chr19 59128983 + 5419367 5419905 MER41A 554 + 0 544 63690 87 5 6 375 0 5 71 chain 4931 chr19 59128983 + 5545897 5545953 MLT2A2 560 + 492 548 195926 56 chain 40849 chr19 59128983 + 5548586 5549027 LTR7Y 441 + 0 441 68097 441 chain 244897 chr19 59128983 + 5549027 5552027 HERVH-int 3825 + 0 3120 16513 489 1 57 24 1 0 10 1 0 24 6 56 23 2 0 14 1 0 14 37 0 45 0 1 6 0 2 13 0 3 52 3 0 13 0 3 215 0 16 361 0 1 243 4 31 1024 0 1 277 0 2 53 4 7 40 chain 40764 chr19 59128983 + 5552782 5553223 LTR7Y 441 + 0 441 68221 441 chain 24059 chr19 59128983 + 5658568 5658862 AluY 311 + 0 291 109985 47 4 0 85 6 7 152 chain 4106 chr19 59128983 + 5685223 5685275 MIRc 230 + 71 121 205828 39 2 0 11 chain 140605 chr19 59128983 + 5701310 5703042 SVA_D 2077 + 7 2076 26054 15 1 0 15 5 0 11 6 7 45 1 2 442 0 80 142 0 4 68 0 350 205 53 0 149 50 0 88 0 10 436 chain 3634 chr19 59128983 + 5702266 5702319 SVA_D 2077 + 1037 1090 74901 53 chain 3428 chr19 59128983 + 5702468 5702518 SVA_D 2077 + 1415 1465 74901 50 chain 25582 chr19 59128983 + 5714624 5714928 AluSg7 307 - 4 307 101815 173 1 0 130 chain 11695 chr19 59128983 + 5716705 5717164 LTR10E 629 - 69 590 153499 75 5 0 28 294 361 57 chain 29849 chr19 59128983 + 5731571 5731885 AluYb8 318 - 4 318 85287 314 chain 8315 chr19 59128983 + 5761483 5761643 THE1D 372 - 0 148 169304 20 6 9 59 34 19 41 chain 21791 chr19 59128983 + 5775694 5775959 LTR3B_ 500 - 233 500 121061 105 0 1 85 0 1 75 chain 24847 chr19 59128983 + 5830610 5830914 AluSc5 308 - 3 308 105639 155 0 3 6 11 8 27 0 1 105 chain 28234 chr19 59128983 + 5846894 5847628 LTR7B 505 + 2 497 92177 106 0 10 57 345 66 8 0 31 42 0 1 42 1 0 76 14 13 43 chain 124195 chr19 59128983 + 5847711 5849500 HERVH-int 3825 + 78 1967 29630 84 0 1 4 0 1 164 1 0 64 75 21 19 11 54 40 38 0 9 40 212 29 2 0 7 3 8 389 1 3 39 15 0 205 9 0 43 0 1 90 10 5 113 1 0 96 0 1 149 6 5 33 chain 25682 chr19 59128983 + 5849789 5850206 LTR7B 505 + 0 491 101367 105 0 10 27 0 2 40 37 11 25 3 91 51 1 0 14 0 1 18 1 2 44 14 13 37 chain 38526 chr19 59128983 + 5851950 5852529 LTR7B 505 + 2 493 71404 193 72 5 15 36 0 21 4 21 223 2 0 13 chain 31301 chr19 59128983 + 5857262 5857637 LTR7B 505 + 84 479 81989 143 2 0 6 2 24 222 chain 25699 chr19 59128983 + 5860954 5861463 MER41A 554 - 182 541 101292 29 1 0 4 1 2 73 0 6 6 6 0 18 156 6 215 chain 3029 chr19 59128983 + 5861198 5861233 MER41A 554 - 326 361 224410 35 chain 29319 chr19 59128983 + 5982658 5982967 AluYa5 310 - 1 310 87445 309 chain 5565 chr19 59128983 + 6083379 6083450 MER58B 340 - 147 219 189434 37 0 1 34 chain 25904 chr19 59128983 + 6152290 6152562 AluYb8 318 - 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chain 35867 chr19 59128983 + 6492592 6494087 MER41A 554 + 0 554 75046 59 7 0 60 6 13 33 353 0 46 5 7 171 13 24 14 617 7 32 0 5 27 0 4 52 chain 29200 chr19 59128983 + 6505822 6506243 LTR7B 505 + 1 495 88048 104 0 10 60 0 38 12 3 27 28 0 2 36 0 1 43 1 0 45 0 1 5 4 3 25 14 13 41 chain 25556 chr19 59128983 + 6507089 6507396 AluSp 311 - 5 311 101947 75 1 0 231 chain 30245 chr19 59128983 + 6511024 6512012 MER4A1 472 + 0 444 84076 111 570 0 105 16 37 50 0 6 46 1 0 89 chain 21997 chr19 59128983 + 6512862 6513167 AluY 311 + 11 301 120241 114 16 1 17 1 4 6 3 0 148 chain 36029 chr19 59128983 + 6513286 6513675 SVA_B 1603 - 0 389 74863 389 chain 22281 chr19 59128983 + 6526116 6526417 AluSc 308 - 6 308 118993 24 1 0 123 6 7 12 6 5 25 0 1 97 0 1 7 chain 6155 chr19 59128983 + 6537226 6537342 MLT1C 463 - 290 395 183936 35 1 0 8 12 6 15 8 4 37 chain 15510 chr19 59128983 + 6538023 6538212 LTR19B 566 - 0 191 139858 145 5 1 7 0 6 32 chain 42765 chr19 59128983 + 6547450 6547969 MER9a3 513 - 0 513 65703 353 12 1 99 0 6 35 1 0 19 chain 87495 chr19 59128983 + 6565177 6566163 L1PA5 6144 - 0 987 40567 383 0 1 603 chain 20010 chr19 59128983 + 6566798 6567143 THE1B 368 - 0 368 127113 40 33 41 85 2 0 8 0 2 100 33 48 44 chain 55576 chr19 59128983 + 6571076 6572253 L1M1 2793 - 98 985 55370 10 1 0 10 10 9 37 1 0 51 0 5 136 12 6 81 22 35 23 7 15 29 0 5 7 6 1 81 0 1 36 4 0 12 1 0 30 0 1 5 318 15 158 1 0 88 chain 8650 chr19 59128983 + 6572969 6573068 HY3 101 - 2 101 167469 99 chain 36440 chr19 59128983 + 6578137 6578594 L1PA8 5853 - 0 445 74314 93 1 0 19 2 1 52 1 0 6 1 0 72 3 1 45 6 0 156 chain 23634 chr19 59128983 + 6578822 6579206 LTR19A 502 - 0 443 112397 35 39 37 134 2 0 52 15 51 25 0 27 82 chain 38138 chr19 59128983 + 6582368 6582820 L1PA5 6144 - 0 444 71932 148 1 0 6 7 0 290 chain 36968 chr19 59128983 + 6597058 6597519 LTR2 463 + 0 463 73556 206 0 1 155 12 13 88 chain 70146 chr19 59128983 + 6599102 6599996 Harlequin-int 5206 + 135 1011 48327 153 12 1 5 3 0 5 0 1 70 4 0 108 3 0 4 5 0 100 0 7 422 chain 87154 chr19 59128983 + 6600108 6601646 HERVE_a-int 7009 + 5519 6985 40710 13 22 10 42 1 0 23 1 0 56 83 79 222 2 0 102 1 0 14 1 0 4 1 0 56 1 0 4 1 0 10 3 0 5 1 0 14 1 0 80 9 7 127 13 12 11 0 1 23 6 5 26 16 14 12 1 0 5 2 0 7 1 0 37 1 0 21 5 4 42 1 0 5 1 0 25 9 7 55 2 1 6 4 0 29 3 0 54 3 1 21 5 4 32 10 7 13 1 0 19 11 9 30 4 2 11 37 29 18 chain 10852 chr19 59128983 + 6601677 6601798 LTR2 463 + 0 121 156771 121 chain 36607 chr19 59128983 + 6612825 6613267 L1PA8A 6298 - 7 451 74089 122 0 1 289 0 1 31 chain 17992 chr19 59128983 + 6613596 6613820 MER75B 242 + 0 222 132883 216 2 0 6 chain 47425 chr19 59128983 + 6627587 6628409 LOR1-int 1871 - 586 1447 60882 15 1 0 45 26 47 45 11 13 18 25 19 82 3 0 22 0 1 91 21 1 38 57 99 18 0 1 120 0 1 12 2 1 14 0 2 156 chain 11356 chr19 59128983 + 6629497 6629656 THE1D 372 - 192 372 154878 10 0 4 19 7 24 123 chain 69564 chr19 59128983 + 6632735 6633729 LTR13 1007 - 0 1007 48583 31 3 1 12 11 7 46 0 2 90 0 2 6 1 0 111 5 13 24 5 0 33 2 1 181 9 28 14 23 24 285 34 28 68 chain 3098 chr19 59128983 + 6647450 6647484 MLT2C2 476 + 440 474 222959 34 chain 17127 chr19 59128983 + 6668111 6668365 AluJr 308 + 21 277 135239 104 8 10 43 22 22 77 chain 11381 chr19 59128983 + 6673133 6673272 BC200 147 + 6 142 154776 130 3 0 6 chain 25079 chr19 59128983 + 6687871 6688154 AluYc 301 - 16 301 104411 169 0 2 114 chain 22428 chr19 59128983 + 6698060 6698324 AluSc 308 - 43 308 118346 227 0 1 37 chain 6315 chr19 59128983 + 6756480 6756572 L1PA8A 6298 - 9 109 182676 25 9 17 58 chain 23060 chr19 59128983 + 6757685 6757959 AluSp 311 + 12 287 115356 136 0 1 138 chain 18016 chr19 59128983 + 6770628 6770873 AluJr 308 + 22 270 132813 80 6 5 4 0 1 13 4 7 138 chain 3310 chr19 59128983 + 6789048 6789102 MER20 218 - 120 192 218767 14 6 24 34 chain 4944 chr19 59128983 + 6796111 6796197 MSTD 398 - 302 398 195758 51 17 27 18 chain 15260 chr19 59128983 + 6799478 6799654 L1PA7 6471 - 14 191 140604 141 0 1 35 chain 25573 chr19 59128983 + 6802071 6802361 L1PA4 6152 + 5861 6151 101860 290 chain 7902 chr19 59128983 + 6805647 6805744 MER1A 529 - 71 168 171637 97 chain 22692 chr19 59128983 + 6830093 6830354 AluSc 308 - 34 295 117114 261 chain 3076 chr19 59128983 + 6842860 6842906 MER58B 340 - 223 270 223420 14 2 3 30 chain 81090 chr19 59128983 + 6868986 6869947 LTR13A 966 + 1 966 43146 83 0 6 64 0 3 516 0 6 27 14 3 257 chain 2893 chr19 59128983 + 6886439 6886482 LTR9 672 + 612 656 227129 10 2 3 31 chain 41290 chr19 59128983 + 6907947 6908452 MER9a2 513 + 1 506 67542 170 2 1 203 10 11 120 chain 11152 chr19 59128983 + 6926943 6927078 AluSq10 312 + 156 291 155620 135 chain 23300 chr19 59128983 + 6928678 6928967 AluSp 311 + 8 299 114199 42 0 7 132 5 0 110 chain 22150 chr19 59128983 + 6949613 6949886 AluSc 308 + 5 277 119588 252 7 6 14 chain 60546 chr19 59128983 + 6952071 6952730 L1PA3long 6157 - 1 660 52548 659 chain 15936 chr19 59128983 + 6962116 6962291 L1PA5 6144 - 415 590 138562 175 chain 35851 chr19 59128983 + 6962291 6962707 L1PA5 6144 + 5728 6144 75060 416 chain 18617 chr19 59128983 + 6964649 6964884 AluSp 311 + 43 277 131165 89 1 0 145 chain 26675 chr19 59128983 + 6978901 6979208 AluY 311 + 0 303 97405 12 5 0 120 0 1 170 chain 30043 chr19 59128983 + 6987474 6987792 AluYb8 318 - 0 318 84670 318 chain 54949 chr19 59128983 + 7066986 7067669 LTR13 1007 - 324 1007 55743 54 4 3 237 8 9 115 0 2 190 2 0 73 chain 36844 chr19 59128983 + 7092325 7092803 LTR12F 595 + 0 583 73743 103 0 1 42 2 0 21 4 94 103 0 1 143 1 16 59 chain 22935 chr19 59128983 + 7093050 7093323 AluY 311 + 21 299 115929 111 0 1 132 1 5 29 chain 37041 chr19 59128983 + 7094828 7095321 LOR1a 498 + 0 491 73470 44 1 2 407 7 4 34 chain 44424 chr19 59128983 + 7100440 7100985 LTR14 556 - 0 556 63666 76 0 10 7 1 0 13 1 0 4 10 9 41 0 4 392 chain 20730 chr19 59128983 + 7103592 7103876 AluSz 310 + 17 298 124854 109 5 3 131 8 7 31 chain 3475 chr19 59128983 + 7104196 7104236 MLT1C 463 - 373 413 215730 40 chain 23130 chr19 59128983 + 7118666 7118950 AluYc 301 + 19 296 114995 95 7 0 182 chain 35972 chr19 59128983 + 7120000 7120449 MER4A1 472 + 0 472 74926 18 0 1 53 0 1 158 0 21 220 chain 23946 chr19 59128983 + 7163316 7163599 AluY 311 + 27 311 110642 105 0 1 178 chain 13009 chr19 59128983 + 7176135 7176329 MSTA 426 + 1 200 148208 96 9 8 24 1 0 8 6 13 50 chain 3199 chr19 59128983 + 7186578 7186638 L1MB3 1562 - 62 121 220941 34 12 11 14 chain 5377 chr19 59128983 + 7225169 7225236 MIR 256 - 118 185 191227 67 chain 23066 chr19 59128983 + 7232542 7232832 AluY 311 + 0 294 115321 52 0 3 63 8 9 167 chain 3282 chr19 59128983 + 7234519 7234558 MER2B 336 + 192 231 219321 39 chain 14613 chr19 59128983 + 7244677 7244880 MER75B 242 + 32 242 142545 89 0 1 7 5 8 87 4 7 11 chain 5112 chr19 59128983 + 7251026 7251203 MER20 218 - 13 187 193950 20 23 0 7 25 51 14 38 33 18 1 0 31 chain 22450 chr19 59128983 + 7270811 7271092 AluY 311 + 22 299 118249 101 1 0 169 3 0 7 chain 23665 chr19 59128983 + 7282715 7282990 AluYc 301 + 0 278 112226 56 0 1 63 0 2 156 chain 5774 chr19 59128983 + 7300187 7301031 L1MA4 2864 - 63 264 187392 29 9 7 24 730 89 52 chain 28346 chr19 59128983 + 7327612 7327984 THE1C 375 - 0 375 91777 26 1 0 175 1 2 49 4 7 116 chain 11482 chr19 59128983 + 7329071 7329272 MER47B 469 + 65 334 154366 82 1 17 28 23 26 19 6 55 42 chain 23134 chr19 59128983 + 7331310 7331671 MER4D1 891 + 0 383 114980 31 31 27 53 12 10 116 1 29 117 chain 7883 chr19 59128983 + 7335295 7335386 MER4A1 472 - 381 472 171789 91 chain 28537 chr19 59128983 + 7336340 7336876 MER4A1 472 + 80 462 91014 56 157 2 86 7 8 230 chain 9917 chr19 59128983 + 7342162 7342280 MER30 238 - 0 116 160984 67 2 0 49 chain 7194 chr19 59128983 + 7435413 7435667 L1MB3 1562 + 991 1296 176111 9 0 50 41 143 144 61 chain 24864 chr19 59128983 + 7502032 7502325 AluSp 311 + 0 299 105549 181 0 6 112 chain 25227 chr19 59128983 + 7520532 7520891 THE1B 368 - 0 368 103606 80 3 1 10 5 6 4 1 0 25 0 1 49 4 0 20 1 0 113 0 15 44 chain 23590 chr19 59128983 + 7538953 7539242 AluSq10 312 + 11 301 112633 196 0 1 93 chain 2946 chr19 59128983 + 7556084 7556127 L1MB5 1630 - 157 195 226185 30 5 0 8 chain 3406 chr19 59128983 + 7589547 7589592 MIRb 242 - 102 145 216977 6 2 0 37 chain 6750 chr19 59128983 + 7612867 7612944 MER30 238 - 0 80 179318 45 0 3 32 chain 8163 chr19 59128983 + 7613407 7613576 MER2 342 - 131 306 170155 85 54 60 30 chain 4727 chr19 59128983 + 7796722 7796787 MIRb 242 - 124 187 198194 52 2 0 11 chain 22994 chr19 59128983 + 7807058 7807349 AluSp 311 + 0 288 115646 36 2 1 95 2 0 156 chain 24116 chr19 59128983 + 7814762 7815048 AluSp 311 + 10 296 109655 286 chain 24878 chr19 59128983 + 7821419 7821794 THE1C 375 + 0 375 105468 81 0 7 6 7 1 84 0 3 12 23 20 131 5 4 26 chain 113691 chr19 59128983 + 7821829 7823362 THE1C-int 1605 + 34 1605 33177 295 0 6 110 0 7 115 11 14 54 12 25 100 7 1 39 1 0 12 32 31 331 4 5 154 0 9 145 0 7 111 chain 34464 chr19 59128983 + 7829014 7829798 LTR15 485 - 54 485 76969 34 2 1 111 0 4 130 0 2 21 4 0 10 354 0 118 chain 4897 chr19 59128983 + 7852625 7852690 MIRb 242 + 55 118 196290 12 2 0 51 chain 71651 chr19 59128983 + 7857518 7858528 LTR13 1007 - 0 1007 47627 31 22 20 138 5 6 100 6 4 8 0 1 12 2 1 57 2 1 228 1 0 10 8 9 34 1 0 223 0 2 8 0 2 29 12 10 73 chain 44089 chr19 59128983 + 7867268 7868035 L1PB1 5432 - 5 743 64107 4 1 0 13 4 6 14 8 7 12 2 1 21 88 72 41 1 0 10 7 6 52 2 0 9 11 7 5 1 0 13 1 0 20 13 11 414 chain 24866 chr19 59128983 + 7893030 7893332 AluSc 308 - 3 306 105537 99 1 2 202 chain 24284 chr19 59128983 + 7943193 7943473 AluSp 311 - 20 300 108744 280 chain 21440 chr19 59128983 + 7949938 7950200 AluSp 311 + 12 277 122368 127 1 3 48 0 1 86 chain 7846 chr19 59128983 + 7951860 7951980 5S 121 - 1 120 172037 87 14 13 19 chain 23281 chr19 59128983 + 7967257 7967537 AluSg7 307 - 13 297 114293 166 1 2 48 0 3 65 chain 25543 chr19 59128983 + 7983132 7983420 AluSp 311 - 23 311 102031 288 chain 8215 chr19 59128983 + 8014189 8014337 MER1A 529 - 334 488 169863 42 6 23 33 28 17 39 chain 3175 chr19 59128983 + 8058021 8058055 L1MC2 1988 + 1954 1988 221423 34 chain 27248 chr19 59128983 + 8068296 8068597 AluY 311 + 2 304 95436 124 0 1 177 chain 36040 chr19 59128983 + 8098115 8098578 LTR19B 566 - 126 566 74848 11 0 1 132 19 0 61 6 1 234 chain 26279 chr19 59128983 + 8106886 8107187 AluY 311 + 9 311 98904 123 0 1 178 chain 18091 chr19 59128983 + 8116049 8116267 AluY 311 + 82 297 132612 50 0 1 150 4 0 14 chain 4008 chr19 59128983 + 8124413 8124461 MER21C 908 - 147 196 207275 37 0 1 11 chain 14255 chr19 59128983 + 8156729 8157268 L1PB2 3958 + 3617 3838 143698 50 308 0 14 2 1 71 2 0 22 1 0 18 13 7 38 chain 4325 chr19 59128983 + 8170443 8170504 MER58B 340 - 182 245 202900 49 1 3 11 chain 22440 chr19 59128983 + 8205076 8205333 AluSx1 309 + 11 268 118298 257 chain 23002 chr19 59128983 + 8222494 8222772 AluSg7 307 + 6 284 115614 126 2 0 142 0 2 8 chain 3975 chr19 59128983 + 8227964 8228021 L1MB3 1562 + 1369 1425 207756 52 1 0 4 chain 42927 chr19 59128983 + 8228427 8228954 MER41A 554 - 7 539 65507 74 0 5 453 chain 37679 chr19 59128983 + 8229051 8230231 MER4E1 777 + 19 768 72575 33 0 10 111 0 1 4 1 0 48 298 190 59 337 0 62 12 14 98 1 2 4 1 0 97 1 3 13 chain 19971 chr19 59128983 + 8264657 8264946 AluY 311 + 11 290 127229 107 7 0 14 10 11 112 15 12 15 1 0 8 chain 49697 chr19 59128983 + 8267905 8268463 LTR6B 557 - 0 557 59239 162 1 0 395 chain 23792 chr19 59128983 + 8332847 8333166 AluSp 311 + 0 304 111517 26 1 0 106 3 0 146 6 4 13 9 0 9 chain 7309 chr19 59128983 + 8333817 8333918 LTR13 1007 + 0 95 175378 68 6 0 27 chain 22658 chr19 59128983 + 8344534 8345091 LTR12C 1709 - 246 839 117288 16 6 7 24 236 208 68 0 48 7 2 17 198 chain 1072 chr19 59128983 + 8345103 8345132 LTR12C 1709 - 732 761 178657 29 chain 7414 chr19 59128983 + 8350961 8351061 MER1A 529 - 3 106 174687 66 1 4 33 chain 22311 chr19 59128983 + 8359372 8359929 LTR12C 1709 - 246 839 118871 16 6 7 24 236 208 52 0 47 16 0 1 7 2 17 198 chain 1072 chr19 59128983 + 8359941 8359970 LTR12C 1709 - 732 761 178656 29 chain 7414 chr19 59128983 + 8365810 8365910 MER1A 529 - 3 106 174686 66 1 4 33 chain 71284 chr19 59128983 + 8379775 8380698 LTR5_Hs 974 + 0 974 47810 47 0 3 25 0 41 526 2 0 8 5 7 114 14 13 38 0 7 35 8 7 22 0 2 79 chain 21651 chr19 59128983 + 8380765 8381054 AluSg7 307 + 9 302 121568 61 0 3 53 0 1 10 20 20 145 chain 18917 chr19 59128983 + 8395799 8396082 AluSx1 309 + 0 286 130320 53 28 33 149 6 4 47 chain 116115 chr19 59128983 + 8440461 8441909 LTR12C 1709 + 0 1709 32410 329 4 0 345 0 2 34 0 159 243 1 0 4 4 2 106 0 4 133 0 1 78 0 1 4 61 31 14 0 131 88 chain 54369 chr19 59128983 + 8444044 8444795 LTR12D 1347 + 405 1347 56118 44 0 3 84 42 32 22 1 0 14 0 1 93 17 12 98 0 3 113 0 200 223 chain 405654 chr19 59128983 + 8444855 8449724 HERV9-int 5642 + 6 4813 9920 40 0 1 213 0 4 332 7 8 191 1 0 162 1 0 150 84 0 48 0 4 200 1 2 20 1 2 198 2 1 2189 1 2 215 0 12 813 chain 6661 chr19 59128983 + 8445953 8446032 HERV9-int 5642 + 1028 1107 179995 79 chain 52556 chr19 59128983 + 8451279 8451985 LTR12D 1347 + 405 1335 57263 131 1 32 18 5 4 109 14 7 228 0 200 151 0 1 49 chain 28489 chr19 59128983 + 8514421 8514718 AluYa5 310 - 13 310 91231 297 chain 21347 chr19 59128983 + 8544656 8544956 AluSg7 307 - 7 307 122701 80 28 27 75 0 1 117 chain 25354 chr19 59128983 + 8595641 8595956 AluSq2 311 + 0 309 102928 133 3 0 156 3 0 20 chain 6018 chr19 59128983 + 8603770 8603848 L1MB3 1562 + 1444 1522 185067 78 chain 4116 chr19 59128983 + 8610744 8610845 LTR16C 481 + 132 233 205697 11 1 0 23 36 37 30 chain 21238 chr19 59128983 + 8680863 8681193 AluSg 306 + 0 306 123060 30 23 16 102 26 9 149 chain 32659 chr19 59128983 + 8741750 8742163 MER41A 554 + 0 424 79751 396 0 11 17 chain 6186 chr19 59128983 + 8777685 8777759 MER2 342 - 127 201 183687 74 chain 2974 chr19 59128983 + 8793666 8793697 tRNA-Gly-GGY 63 - 26 57 225580 31 chain 4305 chr19 59128983 + 8809370 8809481 LTR45C 530 - 59 172 203157 32 46 48 33 chain 10704 chr19 59128983 + 8814369 8814572 LTR47B 464 - 7 210 157397 24 25 26 29 24 23 101 chain 105979 chr19 59128983 + 8818400 8819623 L1PA5 6144 - 2 1230 35262 695 2 0 478 0 7 48 chain 98100 chr19 59128983 + 8826494 8827588 L1PA4 6152 - 3 1096 37254 15 1 0 1078 chain 31093 chr19 59128983 + 8827588 8827927 L1PA4 6152 + 4716 5055 82188 339 chain 13493 chr19 59128983 + 8836626 8836817 MSTA 426 - 226 426 146376 18 2 3 34 0 8 4 1 0 28 1 2 103 chain 9843 chr19 59128983 + 8837819 8837927 L1PA4 6152 + 6044 6152 161378 108 chain 162835 chr19 59128983 + 8849101 8851086 SVA_D 2077 + 6 2077 22959 25 1 0 257 0 1 253 0 40 105 0 40 181 2 0 8 3 1 26 6 0 5 5 0 86 46 1 95 0 1 4 10 37 8 0 1 68 1 0 139 0 1 65 0 1 49 2 38 535 chain 2234 chr19 59128983 + 8850081 8850110 SVA_D 2077 + 1181 1210 73339 29 chain 17779 chr19 59128983 + 8857813 8858067 AluSp 311 + 10 265 133482 121 19 20 114 chain 17779 chr19 59128983 + 8865285 8865539 AluSp 311 + 10 265 133481 121 19 20 114 chain 17779 chr19 59128983 + 8872759 8873013 AluSp 311 + 10 265 133480 121 19 20 114 chain 17183 chr19 59128983 + 8886518 8886766 AluSp 311 + 15 265 135081 95 0 1 20 19 20 114 chain 11987 chr19 59128983 + 8905863 8906051 MER107 203 + 6 203 152262 26 7 8 110 18 26 27 chain 556757 chr19 59128983 + 8906520 8912670 L1PA3long 6157 - 0 6157 640 5061 0 3 31 0 1 430 0 1 182 0 1 203 0 1 243 chain 4939 chr19 59128983 + 8935999 8936077 MADE1 96 - 2 96 195805 36 6 22 36 chain 4642 chr19 59128983 + 8964234 8964415 L1PB4 2604 + 2403 2570 199150 43 109 96 10 1 0 18 chain 11697 chr19 59128983 + 8982894 8983192 L1MB3 1562 + 1259 1515 153487 75 69 56 29 50 24 42 3 0 30 chain 5983 chr19 59128983 + 8984529 8984645 L1P5 443 + 188 296 185401 40 6 5 20 22 15 28 chain 3792 chr19 59128983 + 8992328 8992393 HAL1-2a_MD 234 + 70 123 210512 11 6 0 16 6 0 26 chain 3811 chr19 59128983 + 8994843 8994968 HAL1-2a_MD 234 + 0 125 210222 14 9 0 3 24 0 21 1 0 4 0 46 23 12 0 14 chain 163861 chr19 59128983 + 9022162 9023979 L1PA3long 6157 + 4325 6152 22826 550 0 9 955 0 1 312 chain 20927 chr19 59128983 + 9106762 9107024 L1PA7 6471 + 6207 6466 124188 117 2 0 87 5 4 51 chain 33184 chr19 59128983 + 9113757 9114521 MER4A 717 + 0 451 78930 108 324 0 13 1 0 139 1 13 178 chain 10395 chr19 59128983 + 9155188 9155375 MER4D0 881 + 0 190 158723 30 16 18 6 2 0 50 14 15 18 0 2 51 chain 13782 chr19 59128983 + 9164086 9164270 MER4A1 472 - 259 442 145328 19 1 0 164 chain 51972 chr19 59128983 + 9164270 9164947 LTR12 884 + 0 884 57637 209 14 121 48 2 0 187 0 102 217 chain 3750 chr19 59128983 + 9182602 9182647 MIRc 230 + 68 113 211130 45 chain 20309 chr19 59128983 + 9184765 9185030 MER41A 554 - 6 294 126208 47 10 32 19 0 1 189 chain 13510 chr19 59128983 + 9187386 9187550 LTR2 463 - 291 463 146322 42 0 3 98 0 5 24 chain 30011 chr19 59128983 + 9187820 9188421 MER48 407 - 19 407 84774 82 0 1 133 200 0 139 16 2 31 chain 3661 chr19 59128983 + 9188075 9188114 MER48 407 - 235 274 212554 39 chain 27576 chr19 59128983 + 9189203 9189592 PABL_A 660 - 225 660 94415 53 0 1 40 9 8 27 13 58 48 1 2 198 chain 19509 chr19 59128983 + 9193424 9193694 MER41A 554 + 260 554 128632 189 0 1 17 12 34 32 1 2 19 chain 5604 chr19 59128983 + 9194986 9195067 MER4B 649 + 0 88 189044 16 3 10 62 chain 23625 chr19 59128983 + 9215225 9215508 AluY 311 + 4 288 112437 128 6 7 149 chain 12305 chr19 59128983 + 9219813 9220927 LTR24B 570 - 0 430 150994 36 767 129 25 0 6 21 121 68 16 1 3 5 2 0 64 9 7 6 0 3 41 chain 8352 chr19 59128983 + 9233536 9233646 L1MA7 2200 - 273 382 169107 98 1 0 11 chain 25909 chr19 59128983 + 9246399 9246708 AluSc5 308 - 1 308 100384 189 2 0 118 chain 20753 chr19 59128983 + 9247427 9247664 L1PA2 6032 + 5792 6032 124781 50 0 3 187 chain 7038 chr19 59128983 + 9275052 9275152 THE1B 368 + 243 348 177192 63 10 15 27 chain 29315 chr19 59128983 + 9294351 9294661 AluYf4 310 + 0 310 87469 310 chain 8053 chr19 59128983 + 9297959 9298117 L1PB4 2604 - 67 227 170736 35 46 48 77 chain 3487 chr19 59128983 + 9303447 9303502 MER6B 211 - 3 62 215575 18 2 5 28 0 1 7 chain 36818 chr19 59128983 + 9307149 9307570 L1PA5 6144 + 5716 6140 73781 73 0 2 209 1 2 138 chain 23372 chr19 59128983 + 9326533 9326863 THE1B 368 - 0 342 113805 175 2 0 21 7 6 96 11 26 18 chain 51675 chr19 59128983 + 9336857 9337443 LTR10C 591 - 0 587 57843 580 0 1 6 chain 29054 chr19 59128983 + 9338421 9338728 AluYa5 310 - 3 310 88744 307 chain 17618 chr19 59128983 + 9342645 9342895 LTR9 672 + 0 247 133940 61 5 4 26 1 0 37 1 0 66 2 1 5 0 1 46 chain 41872 chr19 59128983 + 9356281 9357142 LTR66 600 + 0 552 66802 360 0 12 46 14 10 26 316 0 17 1 0 81 chain 102826 chr19 59128983 + 9370007 9371234 LTR12C 1709 + 0 1709 36047 288 0 1 505 8 324 106 0 4 117 0 29 79 0 1 22 0 131 102 chain 3183 chr19 59128983 + 9382240 9382406 Tigger3b 1229 + 148 313 140374 44 0 34 11 45 11 48 1 0 17 chain 32263 chr19 59128983 + 9382434 9382833 L1PA5 6144 - 1 399 80416 20 7 6 372 chain 3451 chr19 59128983 + 9382860 9383040 Tigger3b 1229 + 333 525 140374 13 1 2 51 5 8 16 10 17 32 18 19 34 chain 130727 chr19 59128983 + 9393146 9394695 LTR12C 1709 - 0 1709 27920 85 0 1 395 0 4 6 0 1 99 4 2 4 1 0 116 0 159 259 2 1 347 2 1 229 chain 24246 chr19 59128983 + 9415319 9415616 AluSc5 308 + 0 298 108964 129 1 2 167 chain 31997 chr19 59128983 + 9424755 9425180 LTR12F 595 - 0 595 80869 121 3 9 63 1 2 8 5 0 26 3 4 123 0 167 72 chain 345944 chr19 59128983 + 9427100 9431595 HERV9-int 5642 - 0 4128 11729 17 2 0 3 4 0 19 28 5 15 1 0 58 1 0 27 3 1 36 7 5 226 1 0 324 34 0 7 5 0 806 6 4 74 20 9 1024 0 1 144 0 2 374 273 0 222 0 1 650 2 0 6 12 4 64 chain 21944 chr19 59128983 + 9430381 9430631 L1PA4 6152 + 5892 6143 120445 116 0 1 134 chain 4786 chr19 59128983 + 9431595 9431889 LTR10C 591 - 189 483 79112 294 chain 114893 chr19 59128983 + 9431893 9433519 LTR12C 1709 + 0 1709 32823 166 0 1 36 1 2 60 1 2 28 0 4 162 111 0 7 92 0 186 0 278 180 1 0 5 3 1 99 7 11 481 chain 1742 chr19 59128983 + 9433519 9433626 LTR10C 591 - 483 590 79112 107 chain 12259 chr19 59128983 + 9433626 9433825 MER51C 639 - 394 607 151164 23 1 15 89 1 0 5 21 22 40 0 1 5 1 0 13 chain 12117 chr19 59128983 + 9505704 9506035 THE1B 368 + 0 358 151752 43 172 199 116 chain 529617 chr19 59128983 + 9508380 9514422 L1PA4 6152 + 0 6143 4234 130 1 15 474 0 1 180 0 14 64 0 1 76 0 4 290 0 3 199 0 4 404 0 1 56 0 5 180 0 3 864 0 2 376 0 5 164 0 1 165 2 1 299 0 1 326 0 1 652 0 37 304 1 5 701 0 1 134 chain 22415 chr19 59128983 + 9514538 9514892 THE1B 368 - 0 368 118407 74 1 0 111 33 32 20 23 24 48 0 15 44 chain 38068 chr19 59128983 + 9540578 9541100 HERV1_LTRa 508 + 0 508 72033 41 7 6 43 33 17 4 0 1 236 0 1 14 0 2 87 0 3 14 4 0 39 chain 6595 chr19 59128983 + 9560260 9560342 L1PA16 3655 + 1580 1663 180499 23 0 1 59 chain 350766 chr19 59128983 + 9566632 9572795 HERVK9-int 4720 + 36 4720 11576 13 26 22 58 2 0 28 46 45 668 15 5 191 0 10 322 1 0 108 0 1 291 0 1 22 2 0 533 1 0 38 1 2 196 1 5 315 0 30 504 657 0 230 1 0 129 1 10 77 206 0 45 1 3 167 0 3 64 0 2 206 655 0 10 2 0 303 9 8 8 0 1 10 chain 6260 chr19 59128983 + 9570042 9570132 HERVK9-int 4720 + 3471 3561 183094 5 0 1 5 1 0 79 chain 33892 chr19 59128983 + 9570161 9570649 LTR14B 630 - 0 607 77790 66 0 5 104 0 4 17 2 0 5 40 38 19 0 21 67 0 93 168 chain 10921 chr19 59128983 + 9586799 9586958 THE1D 372 + 0 158 156523 47 3 0 20 11 12 60 0 1 18 chain 115520 chr19 59128983 + 9591777 9593104 L1PA6 6164 + 4832 6159 32602 27 0 1 455 1 0 844 chain 143866 chr19 59128983 + 9593346 9594983 SVA_C 1631 + 41 1630 25502 823 1 0 46 1 0 40 1 0 56 45 0 624 chain 3790 chr19 59128983 + 9594314 9594357 SVA_C 1631 + 960 1003 150860 43 chain 44104 chr19 59128983 + 9597049 9597998 LTR10E 629 + 1 623 64079 9 1 0 55 331 0 99 0 2 62 0 2 64 6 5 262 18 19 19 8 9 15 chain 32382 chr19 59128983 + 9618722 9619138 LTR3 431 - 16 431 80220 47 13 12 356 chain 29191 chr19 59128983 + 9621565 9621911 MER9a3 513 - 0 346 88099 346 chain 32053 chr19 59128983 + 9625311 9625736 LTR3 431 - 0 427 80774 35 7 9 19 13 12 10 1 2 340 chain 95375 chr19 59128983 + 9651413 9652564 LTR12C 1709 - 5 1709 37990 79 1 0 83 0 102 158 3 4 50 0 4 44 0 444 471 0 3 262 chain 5350 chr19 59128983 + 9659271 9659696 LTR12C 1709 + 987 1446 191546 35 49 0 9 282 365 50 chain 23455 chr19 59128983 + 9663687 9664046 MER66B 489 + 44 404 113350 148 1 3 124 40 22 17 1 18 28 chain 44924 chr19 59128983 + 9684739 9685650 LTR10C 591 - 0 591 63146 65 327 0 176 0 7 269 2 1 8 0 3 19 7 5 38 chain 38149 chr19 59128983 + 9691815 9692305 LTR10D 510 - 0 506 71912 239 0 1 33 10 9 34 0 4 88 2 0 11 0 8 5 0 6 68 chain 27595 chr19 59128983 + 9698455 9698817 LTR10F 562 - 8 546 94361 255 16 192 91 chain 175166 chr19 59128983 + 9701391 9704928 HERVIP10F-int 4088 - 797 3837 21437 7 3 0 7 1 0 15 28 24 14 7 4 18 1 0 7 166 129 50 34 31 521 2 1 136 1 2 18 1 0 73 1 0 85 1 0 64 2 1 14 6 5 212 0 1 41 310 0 147 7 3 5 0 1 12 1 0 32 1 0 62 1 0 13 13 11 63 1 0 29 1 0 24 9 7 10 1 0 14 44 32 137 1 0 43 14 12 23 7 4 24 25 20 9 1 0 8 1 0 11 2 0 41 1 0 30 1 0 7 4 1 6 1 0 7 7 22 5 1 0 8 1 0 20 1 0 11 1 0 18 15 13 59 9 7 33 4 2 4 1 0 44 1 0 9 7 5 23 1 0 7 1 0 19 1 0 16 1 0 20 1 0 5 1 0 4 1 0 10 7 6 26 1 0 30 1 0 18 57 46 15 1 0 13 1 0 11 1 0 6 29 18 26 2 0 7 4 0 3 2 0 7 1 0 5 101 65 10 1 0 13 3 1 7 3 0 15 chain 3233 chr19 59128983 + 9709865 9709901 MER54B 801 + 597 633 220377 36 chain 25251 chr19 59128983 + 9714815 9715124 AluSp 311 + 1 311 103473 38 2 3 269 chain 5916 chr19 59128983 + 9720084 9720153 MLT1B-int 1170 + 384 453 186039 69 chain 46047 chr19 59128983 + 9733075 9733642 LTR10C 591 - 6 589 61995 30 1 0 45 0 2 140 0 15 351 chain 82265 chr19 59128983 + 9759672 9760717 MER11C 1089 + 0 1073 42649 246 0 9 60 4 8 367 1 5 10 0 1 31 0 1 32 4 12 83 0 1 54 1 0 142 0 1 10 chain 8086 chr19 59128983 + 9762636 9762774 MLT1B-int 1170 + 378 517 170567 75 32 33 31 chain 145690 chr19 59128983 + 9789996 9791610 SVA_D 2077 + 14 2072 25225 876 0 396 28 0 1 30 9 56 671 chain 74801 chr19 59128983 + 9808124 9809169 MER11C 1089 + 0 1063 46113 241 8 17 48 0 2 5 8 10 62 1 0 149 52 44 112 1 5 42 0 1 32 5 13 82 0 1 54 1 0 117 0 1 25 chain 44786 chr19 59128983 + 9811223 9811802 LTR10C 591 - 0 581 63308 26 1 2 51 0 3 466 11 9 24 chain 301154 chr19 59128983 + 9814860 9818596 Harlequin-int 5206 + 299 4020 13364 185 8 0 38 5 6 646 0 2 112 3 1 274 1 0 63 0 1 214 1 0 4 0 1 414 1 2 287 30 18 731 1 0 173 25 28 189 6 7 325 chain 44487 chr19 59128983 + 9822184 9822697 MER9a1 513 - 0 513 63597 513 chain 391788 chr19 59128983 + 9822697 9827385 HERVK9-int 4720 - 0 4684 10399 40 0 1 222 0 1 123 1 0 1750 0 1 614 0 2 244 3 0 133 2 4 1204 1 0 5 0 1 213 1 0 29 1 0 9 1 0 66 1 0 4 8 5 13 chain 43311 chr19 59128983 + 9828149 9828642 MER9a1 513 - 20 513 65028 493 chain 313018 chr19 59128983 + 9836028 9840345 HERVE_a-int 7009 - 2670 6871 12893 234 4 5 85 0 1 217 0 1 237 1 0 16 7 0 93 0 1 390 1 0 83 1 0 382 0 1 21 1 0 169 1 0 38 1 0 14 1 0 137 5 4 11 7 5 17 13 8 33 1 0 25 2 1 94 1 0 9 6 5 23 1 0 15 1 0 24 1 0 44 1 0 20 25 23 35 1 0 62 1 0 38 1 0 41 1 0 20 1 0 4 2 1 10 1 0 18 13 11 20 1 0 19 1 0 115 1 0 16 1 0 8 22 21 51 2 0 57 1 0 5 1 0 5 1 0 9 17 14 22 1 0 15 1 0 3 1 0 23 4 0 12 10 8 13 1 0 21 2 1 51 1 0 16 2 0 38 1 0 32 2 1 73 1 0 8 1 0 26 5 4 61 0 13 15 3 1 48 1 0 17 2 1 32 2 1 15 8 7 5 1 0 97 2 1 35 1 0 46 8 7 21 1 0 44 1 0 25 4 2 34 28 0 18 1 0 5 41 32 13 1 0 9 1 0 7 1 0 4 1 0 24 4 2 6 2 0 16 0 4 52 3 1 29 3 0 18 chain 34978 chr19 59128983 + 9841104 9841575 LTR2 463 - 0 463 76214 24 1 0 28 1 0 30 0 1 140 6 0 182 2 1 57 chain 31836 chr19 59128983 + 9850236 9850634 MLT2A1 477 - 80 477 81111 193 0 1 21 0 1 12 5 2 167 chain 115440 chr19 59128983 + 9857986 9859333 L1PA6 6164 - 18 1372 32629 137 1 8 1209 chain 8936 chr19 59128983 + 9873347 9873512 MER30 238 - 0 164 165939 48 7 4 49 12 0 7 13 27 29 chain 78499 chr19 59128983 + 9874544 9875428 MER11D 897 + 0 897 44272 302 0 13 582 chain 7354 chr19 59128983 + 9881663 9881830 L1PB1 5432 - 11 148 175064 22 1 0 6 1 0 23 1 0 22 2 0 13 28 15 9 9 0 15 3 0 12 chain 88594 chr19 59128983 + 9886438 9887446 LTR13 1007 + 0 1007 40149 304 1 0 703 chain 22490 chr19 59128983 + 9888067 9888324 AluSc5 308 + 1 258 118063 257 chain 2838 chr19 59128983 + 9895711 9895741 LTR5B 1012 - 978 1008 228103 30 chain 76961 chr19 59128983 + 9900997 9902270 LTR13A 966 - 1 966 44993 161 7 8 152 314 0 260 1 0 255 0 1 31 0 5 92 chain 10717 chr19 59128983 + 9907337 9907469 MER107 203 - 65 203 157342 120 0 6 12 chain 15391 chr19 59128983 + 9913881 9914074 MER4E1 777 + 583 777 140229 61 0 1 132 chain 19784 chr19 59128983 + 9914980 9915236 MER4E 760 - 1 258 127862 6 0 2 217 6 5 27 chain 26467 chr19 59128983 + 9915236 9915537 AluSp 311 - 8 311 98176 264 0 2 37 chain 26956 chr19 59128983 + 9924737 9925600 THE1A 353 - 0 353 96425 167 505 1 6 6 0 69 2 1 24 0 1 84 chain 124846 chr19 59128983 + 9925600 9927471 THE1A-int 1579 - 0 1579 29440 9 0 1 397 1 0 314 306 0 155 11 12 20 5 8 93 3 12 540 6 7 11 chain 25628 chr19 59128983 + 9927472 9927823 THE1A 353 - 1 353 101589 74 0 1 58 1 0 4 6 6 119 7 8 82 chain 21876 chr19 59128983 + 9937043 9937315 AluY 311 + 0 277 120727 20 1 9 150 3 0 98 chain 4013 chr19 59128983 + 9987494 9987546 MSTD 398 + 0 51 207186 23 1 0 28 chain 12908 chr19 59128983 + 9990115 9990347 MSTA 426 + 177 426 148601 29 2 1 25 33 31 33 6 26 104 chain 3270 chr19 59128983 + 9991434 9991471 MLT1B 390 + 312 349 219597 37 chain 26179 chr19 59128983 + 10034806 10035109 AluY 311 + 2 310 99278 87 0 4 24 0 1 192 chain 13512 chr19 59128983 + 10067168 10067321 L1PA5 6144 - 0 156 146314 105 0 3 48 chain 5862 chr19 59128983 + 10155248 10155325 MLT1J 494 - 329 405 186568 71 1 0 5 chain 4229 chr19 59128983 + 10177176 10177225 MLT1A0 366 - 61 110 204190 49 chain 25443 chr19 59128983 + 10185749 10186045 AluY 311 + 14 311 102482 22 0 1 274 chain 9874 chr19 59128983 + 10201477 10201595 AluJb 308 + 176 294 161207 118 chain 25985 chr19 59128983 + 10209980 10210277 AluY 311 + 10 307 100072 297 chain 5919 chr19 59128983 + 10234131 10234227 LTR64 526 - 229 324 185993 55 19 18 22 chain 11536 chr19 59128983 + 10235245 10235465 MLT1B 390 - 35 281 154163 39 0 2 59 60 84 62 chain 22502 chr19 59128983 + 10308034 10308319 AluY 311 + 8 287 118018 46 3 0 78 0 1 117 4 0 37 chain 3863 chr19 59128983 + 10330376 10330422 MADE1 96 - 50 96 209406 46 chain 23992 chr19 59128983 + 10407691 10407986 AluSc 308 + 0 289 110371 73 6 0 216 chain 24288 chr19 59128983 + 10407986 10408296 AluY 311 + 2 299 108714 124 15 0 133 9 11 29 chain 3295 chr19 59128983 + 10411064 10411113 MADE1 96 - 1 66 219078 36 1 17 12 chain 3238 chr19 59128983 + 10417198 10417232 MIR 256 + 104 138 220265 34 chain 24204 chr19 59128983 + 10434550 10434848 AluSp 311 + 8 300 109187 181 14 8 103 chain 36429 chr19 59128983 + 10458979 10459440 L1PA6 6164 - 2 470 74328 9 0 10 26 0 3 94 18 18 10 6 0 298 chain 8682 chr19 59128983 + 10477320 10477428 MER30 238 - 8 119 167294 38 0 3 70 chain 28652 chr19 59128983 + 10518168 10518493 L1PA7 6471 - 5 330 90515 325 chain 10364 chr19 59128983 + 10522455 10522581 Tigger1 2417 - 217 344 158855 120 0 1 6 chain 6462 chr19 59128983 + 10548394 10548478 L1MB3 1562 - 7 90 181538 31 1 0 52 chain 20811 chr19 59128983 + 10554929 10555189 AluSp 311 + 21 297 124564 73 4 20 183 chain 20923 chr19 59128983 + 10562873 10563131 AluSp 311 + 40 299 124200 43 0 2 185 1 0 29 chain 25256 chr19 59128983 + 10575899 10576195 AluSp 311 - 15 311 103443 296 chain 3298 chr19 59128983 + 10576216 10576252 MER20 218 - 148 184 219013 36 chain 26769 chr19 59128983 + 10585082 10585374 AluYf5 307 + 0 292 97091 292 chain 14437 chr19 59128983 + 10588769 10588927 SVA_B 1603 + 1439 1597 143087 158 chain 27046 chr19 59128983 + 10591359 10591660 AluYa5 310 + 8 305 96129 12 5 1 284 chain 25507 chr19 59128983 + 10604231 10604536 AluYk4 311 - 6 311 102194 172 2 0 29 4 6 98 chain 25127 chr19 59128983 + 10635209 10635515 AluSp 311 + 0 304 104143 35 1 0 90 1 0 179 chain 24401 chr19 59128983 + 10636151 10636443 AluSp 311 + 1 295 108068 106 0 1 25 0 1 161 chain 3119 chr19 59128983 + 10648154 10648208 MER33 330 + 231 283 222563 22 4 2 28 chain 26097 chr19 59128983 + 10649530 10649845 LTR12D 1347 - 0 516 99635 147 0 200 23 0 1 145 chain 27311 chr19 59128983 + 10680944 10681248 AluYf4 310 + 1 305 95240 304 chain 20561 chr19 59128983 + 10710627 10710901 AluSp 311 + 8 275 125425 166 8 9 53 8 0 39 chain 22271 chr19 59128983 + 10758492 10758757 AluSg7 307 - 20 286 119029 160 0 1 105 chain 24937 chr19 59128983 + 10815269 10815552 AluSp 311 - 18 301 105127 283 chain 25591 chr19 59128983 + 10833808 10834107 AluSp 311 - 10 310 101773 88 0 1 211 chain 25557 chr19 59128983 + 10843561 10843857 AluSq10 312 - 14 310 101946 296 chain 35599 chr19 59128983 + 10862486 10862985 LTR10D 510 - 0 510 75417 91 3 1 153 1 2 28 0 4 129 7 0 8 17 25 14 0 7 48 chain 25851 chr19 59128983 + 10881221 10881586 THE1B 368 - 12 368 100652 81 5 0 79 6 0 22 3 2 130 0 5 24 2 0 13 chain 12314 chr19 59128983 + 10925319 10925494 L1MA4 2864 - 194 354 150962 28 15 0 132 chain 24597 chr19 59128983 + 10933809 10934093 AluSp 311 + 11 294 107010 117 1 0 166 chain 3257 chr19 59128983 + 10947742 10947780 MIRb 242 + 102 140 219812 38 chain 29089 chr19 59128983 + 10962362 10962679 AluYb8 318 + 0 314 88596 308 3 0 6 chain 21349 chr19 59128983 + 10968305 10968573 AluSx4 309 + 29 293 122692 257 4 0 7 chain 3393 chr19 59128983 + 11007868 11007907 MIRc 230 + 68 107 217221 39 chain 26438 chr19 59128983 + 11008507 11008807 AluYf4 310 + 8 306 98277 118 2 0 180 chain 7087 chr19 59128983 + 11019175 11019279 MIRb 242 - 75 175 176843 24 4 0 60 1 0 5 0 1 10 chain 22737 chr19 59128983 + 11060450 11060758 AluY 311 + 0 300 116883 123 0 3 8 21 12 137 2 0 17 chain 25105 chr19 59128983 + 11064537 11064826 AluY 311 + 11 301 104255 121 0 1 168 chain 24307 chr19 59128983 + 11068024 11068319 AluSp 311 - 17 311 108617 174 2 0 80 0 1 39 chain 17781 chr19 59128983 + 11112909 11113161 AluY 311 + 36 289 133472 78 9 0 10 17 27 138 chain 24285 chr19 59128983 + 11162167 11162454 AluSc 308 - 11 298 108737 287 chain 10670 chr19 59128983 + 11171727 11171880 AluJb 308 + 11 298 157527 33 2 137 100 2 1 16 chain 13103 chr19 59128983 + 11194218 11194367 L1PA7 6471 - 10 158 147832 9 1 0 139 chain 13901 chr19 59128983 + 11214468 11214645 MER83 447 + 80 256 144911 82 1 0 94 chain 24918 chr19 59128983 + 11214677 11214968 AluSq10 312 + 11 300 105235 122 2 0 167 chain 24498 chr19 59128983 + 11221665 11221954 AluSp 311 + 21 311 107549 259 0 1 30 chain 3000 chr19 59128983 + 11228987 11229070 MER20 218 + 33 118 225031 18 10 11 16 18 19 21 chain 27929 chr19 59128983 + 11243111 11243420 AluYb8 318 + 0 310 93238 97 1 2 211 chain 19733 chr19 59128983 + 11248057 11248286 AluSp 311 + 30 259 128003 229 chain 24724 chr19 59128983 + 11264461 11264763 AluY 311 + 0 294 106296 122 6 0 162 2 0 10 chain 24203 chr19 59128983 + 11297090 11297384 AluSp 311 + 0 291 109192 26 1 0 121 2 0 144 chain 119727 chr19 59128983 + 11386800 11388209 SVA_B 1603 - 2 1603 31139 547 0 77 54 7 129 433 1 0 50 0 4 38 5 4 63 2 0 157 1 6 5 12 0 34 chain 22801 chr19 59128983 + 11388482 11388808 AluSp 311 - 12 298 116571 10 3 0 93 38 0 75 0 1 107 chain 56193 chr19 59128983 + 11413632 11414235 SVA_D 2077 + 1462 2065 55022 603 chain 17810 chr19 59128983 + 11431879 11432195 THE1D 372 - 62 372 133377 83 5 4 23 12 0 7 13 27 61 0 1 9 11 15 6 3 0 19 9 0 55 chain 27322 chr19 59128983 + 11493037 11493334 AluSp 311 - 10 307 95199 297 chain 23459 chr19 59128983 + 11496754 11497031 AluY 311 + 11 289 113320 114 1 2 162 chain 24247 chr19 59128983 + 11513744 11514010 AluYf4 310 - 44 310 108960 266 chain 9037 chr19 59128983 + 11519447 11519554 HY1 111 + 0 111 165407 45 0 4 62 chain 26430 chr19 59128983 + 11566917 11567218 AluSg7 307 - 6 307 98307 301 chain 3535 chr19 59128983 + 11608179 11608223 MIR 256 + 17 65 214777 6 0 4 38 chain 15577 chr19 59128983 + 11633897 11634123 Tigger2 2703 + 2286 2526 139648 15 8 14 145 14 17 36 0 5 8 chain 8909 chr19 59128983 + 11654175 11654278 L1PA6 6164 + 6046 6149 166089 103 chain 56243 chr19 59128983 + 11716563 11718762 THE1C-int 1605 - 11 1605 54998 34 0 2 73 0 2 79 0 11 107 0 15 7 1385 744 9 0 1 40 18 25 136 6 5 275 2 0 8 8 9 12 chain 5820 chr19 59128983 + 11721437 11721506 LTR23 429 + 294 363 186946 69 chain 26844 chr19 59128983 + 11732191 11732593 LTR3A 482 - 87 482 96826 137 39 30 112 3 7 50 2 0 59 chain 20425 chr19 59128983 + 11736581 11737304 HERVK3-int 3053 - 2433 3032 125831 7 9 0 31 4 0 9 26 15 67 12 10 29 23 16 31 12 7 11 6 4 14 1 0 74 0 1 4 9 5 9 2 0 9 113 77 41 14 0 13 1 0 5 99 72 38 chain 32087 chr19 59128983 + 11737367 11737861 LTR3A 482 - 10 482 80715 64 1 0 56 9 8 78 60 38 112 0 1 5 0 1 109 chain 126377 chr19 59128983 + 11743586 11745164 THE1A-int 1579 + 0 1579 28982 15 1 3 95 6 10 158 0 2 119 8 0 21 0 1 173 17 18 382 1 0 14 1 0 147 0 1 420 chain 20528 chr19 59128983 + 11745164 11745450 THE1A 353 + 0 304 125550 77 12 13 18 3 2 30 0 18 146 chain 24988 chr19 59128983 + 11749787 11750085 AluSc5 308 + 4 305 104872 62 0 1 210 0 2 26 chain 19629 chr19 59128983 + 11753512 11753816 THE1C 375 + 7 375 128312 78 0 1 93 22 19 75 0 67 10 7 6 19 chain 26392 chr19 59128983 + 11759706 11760017 AluYk4 311 + 0 308 98443 132 3 0 176 chain 27336 chr19 59128983 + 11769648 11770025 LTR43 600 - 212 600 95154 128 6 8 189 16 25 38 chain 24158 chr19 59128983 + 11780430 11780736 AluSp 311 - 9 311 109442 54 12 9 207 1 0 32 chain 121698 chr19 59128983 + 11787077 11788703 SVA_B 1603 - 0 1592 30482 104 2 0 227 0 1 95 0 4 85 0 77 35 1 0 55 28 20 17 4 0 15 0 40 46 41 0 139 115 0 599 1 8 7 0 8 10 chain 8527 chr19 59128983 + 11797058 11797272 MER2 342 - 22 255 168154 21 63 79 62 13 18 5 2 0 48 chain 4196 chr19 59128983 + 11799339 11799402 LTR45B 484 + 56 120 204608 20 7 8 36 chain 25396 chr19 59128983 + 11802529 11802830 AluY 311 + 0 297 102699 12 2 0 111 3 0 9 0 1 164 chain 24518 chr19 59128983 + 11809680 11809973 AluY 311 + 2 303 107448 130 0 1 90 1 8 72 chain 37697 chr19 59128983 + 11820806 11821267 LTR2 463 - 0 462 72557 89 6 7 348 1 0 5 0 1 12 chain 25465 chr19 59128983 + 11826064 11826363 AluSp 311 - 12 311 102376 299 chain 24480 chr19 59128983 + 11834369 11834651 AluSp 311 - 21 303 107655 282 chain 26550 chr19 59128983 + 11848070 11848375 AluSp 311 - 4 310 97836 165 0 1 140 chain 24217 chr19 59128983 + 11856103 11856390 AluSc 308 + 7 294 109116 287 chain 31316 chr19 59128983 + 11859093 11859568 L1MA2 4263 - 185 653 81965 20 7 0 58 0 4 30 1 0 9 2 1 150 15 12 11 6 7 114 1 0 44 0 1 7 chain 13125 chr19 59128983 + 11875119 11875433 L1PREC2 3366 - 319 614 147744 40 3 1 35 29 21 28 3 1 15 51 39 14 8 16 21 2 0 10 1 0 54 chain 10522 chr19 59128983 + 11876295 11876460 THE1B 368 + 137 306 158157 32 1 0 28 0 3 14 13 16 12 1 0 64 chain 85722 chr19 59128983 + 11882216 11883213 LTR13 1007 + 0 1007 41261 269 0 2 128 0 3 62 0 2 275 0 1 58 0 2 16 2 1 77 0 1 110 chain 22405 chr19 59128983 + 11890303 11890576 AluY 311 + 25 297 118459 107 0 1 77 7 5 82 chain 9761 chr19 59128983 + 11938821 11938954 MER85 139 - 3 137 161791 31 8 9 94 chain 25871 chr19 59128983 + 11954574 11954962 LTR3B 427 - 37 427 100564 9 0 8 4 1 0 8 6 7 17 0 6 28 0 3 96 17 7 20 6 0 120 0 1 56 chain 8502 chr19 59128983 + 11962800 11962934 LTR24C 604 - 251 364 168280 11 21 0 102 chain 9422 chr19 59128983 + 11971000 11971106 AluYb8 318 + 26 132 163446 106 chain 32418 chr19 59128983 + 11971394 11971799 LTR3 431 - 18 430 80169 73 0 1 68 0 4 117 0 2 130 1 0 6 0 1 10 chain 8848 chr19 59128983 + 11974927 11975051 MER85 139 - 0 125 166387 34 8 9 82 chain 3683 chr19 59128983 + 11975916 11975967 L1MB2 1706 - 316 363 212177 24 4 0 23 chain 42468 chr19 59128983 + 11991177 11991702 LTR10G 522 + 0 522 66052 113 1 0 239 0 1 95 4 1 73 chain 38234 chr19 59128983 + 11997141 11997649 LTR10G 522 + 18 522 71796 98 1 0 237 1 0 12 5 6 73 9 6 72 chain 483544 chr19 59128983 + 12017069 12022636 L1PA5 6144 + 559 6135 7608 346 0 1 62 0 1 155 7 11 34 9 0 74 2 1 206 0 1 75 0 3 388 2 4 388 3 0 70 0 4 510 0 1 786 0 4 340 2 0 754 0 1 201 1 0 913 0 1 106 0 2 133 chain 22997 chr19 59128983 + 12032329 12032617 AluSg7 307 - 21 307 115636 72 5 4 78 0 1 67 2 0 64 chain 39248 chr19 59128983 + 12032708 12033287 LTR61 567 + 0 558 70391 22 3 0 33 17 11 27 7 0 22 0 1 15 9 6 89 1 0 287 2 0 3 1 0 30 0 1 11 chain 3470 chr19 59128983 + 12041216 12041258 MER54A 897 - 757 799 215825 42 chain 115133 chr19 59128983 + 12046527 12047883 L1PA6 6164 - 5 1379 32741 5 2 0 59 1 0 70 2 0 5 0 2 298 7 27 676 0 1 231 chain 9121 chr19 59128983 + 12048698 12048825 MER85 139 - 0 128 164962 34 8 9 85 chain 120529 chr19 59128983 + 12049063 12050430 L1PA5 6144 - 12 1389 30868 348 0 1 26 8 16 682 0 1 303 chain 137401 chr19 59128983 + 12051084 12052674 LTR12C 1709 - 0 1709 26575 204 1 0 277 2 6 104 2 0 5 2 1 275 1 0 19 0 119 438 0 1 260 chain 4593 chr19 59128983 + 12077774 12077868 MER41D 557 - 26 124 199716 13 0 2 33 27 29 21 chain 4010 chr19 59128983 + 12079469 12079519 LTR24C 604 - 305 355 207238 50 chain 5908 chr19 59128983 + 12086593 12086663 LTR60 593 - 261 331 186101 70 chain 8126 chr19 59128983 + 12095146 12095257 LTR1 825 - 240 351 170353 10 0 1 36 3 2 62 chain 8788 chr19 59128983 + 12096992 12097120 MER30 238 - 0 138 166719 70 3 18 44 5 0 6 chain 78224 chr19 59128983 + 12099229 12100167 LTR13_ 950 - 0 950 44401 89 0 4 206 1 5 268 0 2 103 0 2 133 0 1 84 1 0 53 chain 14033 chr19 59128983 + 12101431 12102081 L1PB1 5432 + 5146 5427 144443 10 2 0 3 2 0 9 2 0 9 0 3 16 9 7 17 4 1 15 1 0 45 1 0 20 28 7 8 328 0 11 2 0 4 1 0 15 3 1 23 1 0 21 1 0 13 1 0 15 1 0 4 1 0 4 chain 28410 chr19 59128983 + 12103872 12104319 LTR61 567 - 38 562 91538 122 0 4 114 8 63 18 0 1 4 1 0 8 0 2 15 34 39 61 5 0 8 1 17 48 chain 4882 chr19 59128983 + 12106501 12106561 HSMAR1 1287 + 12 72 196457 60 chain 539945 chr19 59128983 + 12115640 12121624 L1PA3long 6157 - 11 6153 2822 328 1 0 118 0 6 910 0 22 2443 0 1 1409 0 128 411 5 6 209 3 4 147 chain 8509 chr19 59128983 + 12122704 12122806 LTR8 732 + 65 166 168249 73 1 0 28 chain 38227 chr19 59128983 + 12132820 12133326 MER9a3 513 + 0 513 71807 18 0 2 80 20 21 135 1 0 51 0 4 123 0 1 78 chain 360246 chr19 59128983 + 12133884 12138160 HERVK9-int 4720 + 134 4718 11358 26 1 0 273 0 1 50 1 8 387 5 4 85 0 12 371 2 4 191 0 255 133 0 6 197 1 0 156 0 1 217 1 0 1184 4 21 263 0 1 441 0 6 185 0 4 89 1 0 4 0 1 8 chain 25596 chr19 59128983 + 12149349 12149656 AluSq10 312 + 0 306 101748 133 1 0 173 chain 23997 chr19 59128983 + 12169312 12169606 AluSp 311 - 18 311 110345 161 1 0 132 chain 37369 chr19 59128983 + 12171558 12172020 LTR2 463 + 0 463 73004 362 12 13 88 chain 3337 chr19 59128983 + 12172020 12172132 MER41B 635 - 2 118 218293 17 51 55 34 1 0 4 0 1 5 chain 12969 chr19 59128983 + 12185880 12186028 L1PA4 6152 + 6002 6151 148354 69 0 1 79 chain 6914 chr19 59128983 + 12198900 12199029 LTR26 622 - 14 144 178082 36 0 1 45 31 31 17 chain 7876 chr19 59128983 + 12199063 12199157 HY3 101 - 3 97 171827 94 chain 24069 chr19 59128983 + 12200670 12200967 AluSp 311 - 14 311 109930 297 chain 21146 chr19 59128983 + 12203636 12203888 AluSp 311 + 0 300 123382 20 0 44 27 0 4 205 chain 44083 chr19 59128983 + 12209140 12209656 MER9a1 513 - 0 513 64120 61 1 0 7 3 1 444 chain 297563 chr19 59128983 + 12209656 12213243 HERVK9-int 4720 - 0 4662 13549 104 0 4 66 0 28 9 2 1 13 0 1 56 0 96 1103 0 2 167 0 1 49 5 15 110 0 1 384 1 0 90 0 924 242 1 0 125 0 1 99 0 2 142 1 4 252 1 0 139 3 1 58 0 1 201 2 0 64 0 11 22 1 0 8 1 0 66 chain 45414 chr19 59128983 + 12214591 12215107 MER9a1 513 - 0 513 62577 61 1 0 7 2 0 445 chain 9435 chr19 59128983 + 12215127 12215259 LTR10C 591 - 453 591 163383 73 5 11 54 chain 23114 chr19 59128983 + 12225725 12225994 AluSc5 308 - 24 297 115074 18 0 4 251 chain 24775 chr19 59128983 + 12240433 12240734 AluY 311 + 0 295 106025 118 6 0 16 0 1 82 1 0 78 chain 21681 chr19 59128983 + 12254068 12254339 AluSc 308 + 20 292 121464 25 12 13 234 chain 20892 chr19 59128983 + 12259849 12260119 AluSc5 308 + 35 300 124310 104 1 2 9 8 2 148 chain 7444 chr19 59128983 + 12264987 12265076 LTR24C 604 + 227 316 174487 89 chain 67777 chr19 59128983 + 12308608 12309657 L1MA1 4479 - 330 1355 49334 7 1 0 20 2 0 15 2 0 30 11 12 113 13 9 82 4 3 13 2 0 19 1 0 26 0 2 41 10 9 9 2 0 24 1 0 202 3 1 68 1 2 53 4 0 126 10 5 7 1 0 38 0 4 33 26 24 23 1 0 5 chain 4575 chr19 59128983 + 12322170 12322418 L1M3 994 - 555 790 199923 19 161 145 15 4 7 49 chain 42068 chr19 59128983 + 12328077 12328760 L1M1 2793 - 98 820 66537 10 1 0 12 1 0 45 1 0 22 2 1 164 1 0 56 8 12 73 0 1 4 1 0 19 1 2 24 14 18 26 0 3 70 12 27 16 0 4 13 10 13 5 0 3 40 0 4 12 7 10 13 chain 28134 chr19 59128983 + 12338447 12339241 LTR19-int 1103 - 526 1055 92528 74 11 10 40 6 1 88 8 0 34 29 19 50 27 6 26 0 1 7 30 0 11 30 0 6 0 1 34 40 5 16 1 0 17 1 0 7 17 0 25 104 0 15 1 0 4 21 18 14 chain 30500 chr19 59128983 + 12341515 12341922 LTR19A 502 - 0 490 83428 11 0 6 209 10 85 37 0 1 50 0 1 53 0 1 4 1 0 32 chain 75053 chr19 59128983 + 12342649 12343605 LTR5_Hs 974 - 0 974 45992 77 0 6 20 8 6 31 8 15 132 0 6 25 1 0 188 0 1 181 0 1 285 chain 29304 chr19 59128983 + 12343773 12344217 LTR19A 502 + 0 502 87554 66 1 3 108 1 5 12 11 10 21 0 1 52 0 39 102 11 13 23 9 16 12 0 4 15 chain 9026 chr19 59128983 + 12345741 12345907 LTR9 672 - 84 246 165461 50 2 0 10 2 0 5 27 23 10 0 4 60 chain 25053 chr19 59128983 + 12345909 12346214 AluYk4 311 + 0 306 104531 76 0 7 198 6 0 25 chain 34376 chr19 59128983 + 12388838 12389308 MER9a3 513 + 0 513 77098 18 0 2 6 1 24 50 10 11 66 0 1 80 0 17 159 0 1 10 2 0 68 chain 3380 chr19 59128983 + 12393177 12393214 LTR44 473 + 0 37 217472 37 chain 32104 chr19 59128983 + 12406524 12406979 LTR2 463 + 0 463 80681 56 0 4 50 5 6 38 3 7 10 0 1 133 4 8 67 1 2 16 5 0 13 1 0 28 1 0 24 chain 25627 chr19 59128983 + 12407000 12407328 AluSp 311 + 0 309 101593 228 16 0 72 3 0 9 chain 26660 chr19 59128983 + 12408969 12409268 AluY 311 + 4 303 97452 299 chain 96212 chr19 59128983 + 12472508 12473700 SVA_C 1631 + 20 1292 37763 37 14 2 611 40 0 63 0 40 79 0 92 348 chain 21082 chr19 59128983 + 12485910 12486163 AluSp 311 - 52 304 123617 127 1 0 125 chain 36351 chr19 59128983 + 12515652 12516090 MLT2A1 477 + 2 477 74429 138 0 1 28 0 4 215 0 32 57 chain 76245 chr19 59128983 + 12527727 12528761 MER11A 1151 + 0 1151 45336 79 0 8 140 0 4 63 0 11 21 0 17 189 0 13 128 15 18 12 1 2 38 0 4 67 0 1 19 4 62 98 5 4 87 1 0 27 1 0 39 chain 72701 chr19 59128983 + 12557097 12559258 L1M1 2793 - 903 2118 47167 52 12 22 541 666 58 37 4 5 33 3 4 15 321 0 96 0 1 23 2 1 101 12 9 53 1 0 7 47 44 12 22 17 15 2 0 4 2 0 11 40 27 27 chain 25795 chr19 59128983 + 12557705 12557985 AluYf4 310 - 4 281 100895 180 3 0 97 chain 40106 chr19 59128983 + 12561402 12562001 LTR14B 630 + 10 630 69171 153 1 0 99 0 11 13 6 31 20 20 19 33 0 9 16 42 20 196 chain 104932 chr19 59128983 + 12562209 12563715 HERVK14-int 1672 + 6 1665 35518 24 1 0 4 7 6 46 1 0 220 6 5 15 1 0 5 4 3 230 4 3 46 1 0 206 1 0 133 1 4 26 1 0 4 0 148 58 20 38 78 2 1 107 1 0 63 7 6 23 2 0 11 1 0 114 4 5 21 1 0 6 chain 33855 chr19 59128983 + 12571594 12571982 L1PA5 6144 + 5753 6143 77847 218 0 2 170 chain 139637 chr19 59128983 + 12577935 12579521 SVA_D 2077 + 18 2076 26197 167 2 0 31 1 0 324 0 40 185 2 39 113 0 137 37 0 2 9 0 79 38 0 1 3 0 177 44 0 1 4 0 1 626 chain 78752 chr19 59128983 + 12602701 12605728 L1MA3 4352 + 2337 4344 44170 156 0 6 17 5 0 72 0 1 10 2 3 27 1732 753 14 6 7 74 1 4 38 5 0 160 7 0 73 12 10 92 3 0 11 5 7 221 42 12 7 0 7 60 6 5 73 3 1 24 2 1 5 1 0 26 1 0 14 6 2 14 chain 27153 chr19 59128983 + 12602990 12603292 AluYf4 310 - 8 310 95747 36 2 0 247 0 2 17 chain 27120 chr19 59128983 + 12604402 12604721 AluY 311 + 0 311 95866 33 1 0 93 7 0 185 chain 7671 chr19 59128983 + 12648125 12648251 MER2 342 + 91 215 173091 23 1 0 43 15 14 44 chain 20835 chr19 59128983 + 12663788 12664038 AluSx 319 + 0 260 124499 23 0 9 65 0 1 162 chain 45314 chr19 59128983 + 12677239 12677736 L1PA3long 6157 + 5660 6157 62701 497 chain 44012 chr19 59128983 + 12680664 12681210 MLT2A2 560 + 0 559 64193 28 0 5 346 1 0 63 0 4 40 0 4 39 0 1 29 chain 13707 chr19 59128983 + 12698279 12698432 L1PA5 6144 + 5988 6141 145572 153 chain 3648 chr19 59128983 + 12701565 12701610 L1MC2 1988 + 524 569 212820 45 chain 22446 chr19 59128983 + 12709211 12709470 AluSp 311 - 35 291 118269 214 3 0 42 chain 33392 chr19 59128983 + 12710351 12710894 PABL_A-int 1935 + 106 646 78584 27 24 22 13 0 4 71 1 0 53 1 0 37 2 0 5 17 22 49 1 3 49 1 0 117 27 20 48 chain 24713 chr19 59128983 + 12716689 12716993 AluSp 311 - 9 311 106369 9 7 0 53 0 5 235 chain 59253 chr19 59128983 + 12732531 12733184 SVA_F 1814 + 1122 1812 53248 16 1 0 39 1 0 10 1 0 36 0 37 151 0 3 398 chain 21376 chr19 59128983 + 12771048 12771315 AluSc 308 + 11 279 122597 40 0 1 4 2 1 53 0 2 145 1 0 22 chain 90270 chr19 59128983 + 12822717 12823727 LTR13 1007 + 0 1006 39548 426 4 0 580 chain 25302 chr19 59128983 + 12837028 12837335 AluY 311 + 1 301 103216 19 6 0 113 2 1 167 chain 26993 chr19 59128983 + 12854536 12854844 AluYf4 310 - 6 310 96305 38 2 0 202 2 0 64 chain 25650 chr19 59128983 + 12870846 12871130 AluSp 311 - 24 311 101493 194 0 3 90 chain 29082 chr19 59128983 + 12886684 12886990 AluYf4 310 - 4 310 88634 306 chain 25978 chr19 59128983 + 12930419 12930719 AluSq10 312 + 8 308 100107 300 chain 25065 chr19 59128983 + 12980720 12981020 AluY 311 + 0 308 104479 17 0 7 108 0 1 175 chain 3847 chr19 59128983 + 12995610 12995650 LTR7B 505 - 0 40 209678 40 chain 5033 chr19 59128983 + 12995968 12996030 MER96 175 + 8 70 194795 62 chain 24365 chr19 59128983 + 13028473 13028761 AluSp 311 - 12 300 108290 288 chain 10460 chr19 59128983 + 13031061 13031609 MER39B 650 + 255 486 158438 20 3 4 24 81 56 62 297 4 61 chain 4513 chr19 59128983 + 13031133 13031183 MER39B 650 - 262 312 200644 50 chain 31988 chr19 59128983 + 13069131 13069481 L1PA4 6152 - 1 351 80882 350 chain 11808 chr19 59128983 + 13070175 13070329 L1MB3 1562 + 1272 1425 152989 80 1 0 73 chain 22562 chr19 59128983 + 13089235 13089546 AluSg 306 + 5 304 117751 21 29 17 6 0 1 212 1 0 42 chain 4250 chr19 59128983 + 13190925 13191017 MER96B 391 + 23 115 203876 16 25 26 42 1 0 8 chain 3243 chr19 59128983 + 13235758 13235793 MER4E1 777 - 73 108 220170 35 chain 3096 chr19 59128983 + 13256336 13256411 MIR 256 + 63 136 222995 21 25 23 29 chain 22648 chr19 59128983 + 13277959 13278237 AluSg7 307 - 23 303 117338 42 1 2 113 0 1 122 chain 125880 chr19 59128983 + 13296542 13298075 LTR12C 1709 - 0 1709 29135 481 7 11 58 0 47 264 0 118 189 1 0 248 6 2 111 0 12 168 chain 25302 chr19 59128983 + 13305163 13305466 AluSp 311 + 2 305 103218 117 0 1 4 1 0 181 chain 25360 chr19 59128983 + 13314225 13314513 AluSp 311 - 23 311 102886 288 chain 16600 chr19 59128983 + 13344344 13344585 AluJo 314 - 52 295 136669 101 33 35 107 chain 5388 chr19 59128983 + 13418387 13418454 MER74A 558 + 473 540 191112 67 chain 5910 chr19 59128983 + 13433159 13433291 MLT1C 463 + 305 428 186089 15 35 31 10 5 0 67 chain 2895 chr19 59128983 + 13458355 13458467 MER58A 224 + 75 186 227116 16 62 61 34 chain 23001 chr19 59128983 + 13459380 13459662 AluSc5 308 + 11 293 115620 282 chain 3106 chr19 59128983 + 13466266 13466421 LTR16C 481 - 74 271 222834 15 0 20 17 100 122 23 chain 9339 chr19 59128983 + 13468011 13468141 MER85 139 - 0 139 163858 28 6 15 96 chain 4540 chr19 59128983 + 13491485 13491542 MER33 330 - 51 108 200332 57 chain 3443 chr19 59128983 + 13506523 13506565 MER39B 650 + 336 378 216325 42 chain 14716 chr19 59128983 + 13518616 13518970 MSTA 426 + 0 408 142214 98 127 161 33 17 37 79 chain 4569 chr19 59128983 + 13521895 13521971 MADE1 96 + 0 96 200008 15 11 30 24 0 1 26 chain 22419 chr19 59128983 + 13537989 13538270 AluSp 311 + 6 286 118379 119 5 4 157 chain 7230 chr19 59128983 + 13553973 13554064 MSTC 436 + 346 436 175887 26 1 0 64 chain 3941 chr19 59128983 + 13554685 13554802 MIRb 242 + 91 238 208245 23 0 3 9 53 80 32 chain 45037 chr19 59128983 + 13558283 13558843 MLT2A2 560 - 0 560 63010 68 0 1 311 1 0 180 chain 12057 chr19 59128983 + 13564959 13565114 MER21B 843 - 573 729 151962 53 1 2 101 chain 20056 chr19 59128983 + 13591029 13591357 Tigger2 2703 + 2302 2649 126950 18 1 13 42 1 10 104 18 16 35 7 0 8 14 21 80 chain 27302 chr19 59128983 + 13625087 13625397 AluYf5 307 - 0 307 95272 175 3 0 132 chain 56547 chr19 59128983 + 13640343 13641082 L1PA8 5853 + 5119 5853 54828 159 0 2 284 1 0 43 3 1 70 2 1 12 4 0 7 0 3 39 2 1 19 1 0 93 chain 20933 chr19 59128983 + 13654464 13654765 L1MA2 4263 + 3820 4114 124168 19 0 2 89 0 1 25 11 9 91 12 5 44 1 0 9 chain 20931 chr19 59128983 + 13672026 13672384 THE1B 368 - 1 368 124174 44 18 17 66 0 8 14 40 41 60 7 9 66 1 0 42 chain 2629 chr19 59128983 + 13686929 13687047 L2a 937 + 575 685 231282 15 66 59 12 2 1 23 chain 24179 chr19 59128983 + 13703721 13704001 AluY 311 + 19 298 109321 107 1 0 172 chain 7898 chr19 59128983 + 13711710 13711816 FLAM_A 137 - 6 108 171664 92 4 0 10 chain 23518 chr19 59128983 + 13718502 13718780 AluSp 311 + 5 283 113028 278 chain 23330 chr19 59128983 + 13721563 13721858 AluSg7 307 - 3 307 114032 65 1 12 18 6 5 78 1 0 126 chain 3872 chr19 59128983 + 13739779 13739825 MSTC 436 + 390 436 209271 46 chain 20739 chr19 59128983 + 13765102 13765389 MER39B 650 + 14 318 124824 28 0 13 110 0 1 14 2 1 36 9 13 88 chain 8749 chr19 59128983 + 13774397 13774519 MER41B 635 - 0 124 166925 53 7 9 62 chain 15473 chr19 59128983 + 13775408 13776086 LTR8 732 + 0 685 139982 19 0 1 12 23 32 92 7 6 11 415 413 99 chain 6695 chr19 59128983 + 13780992 13781118 Charlie20a 515 + 320 444 179728 32 27 26 39 1 0 27 chain 16191 chr19 59128983 + 13792345 13792544 LTR26 622 - 413 612 137780 199 chain 25002 chr19 59128983 + 13800596 13800879 L1PA5 6144 + 5861 6144 104767 283 chain 129830 chr19 59128983 + 13813617 13815361 SVA_F 1814 + 335 1814 28130 553 1 0 48 0 1 10 280 19 60 51 0 112 1 49 617 1 0 10 chain 5845 chr19 59128983 + 13814231 13814295 SVA_F 1814 + 1090 1154 151967 64 chain 3425 chr19 59128983 + 13814295 13814363 SVA_F 1814 + 978 1046 133743 68 chain 2424 chr19 59128983 + 13814419 13814487 SVA_F 1814 + 975 1043 188400 36 2 1 26 0 1 4 chain 2569 chr19 59128983 + 13814569 13814620 SVA_F 1814 + 1153 1202 133743 24 2 0 25 chain 29313 chr19 59128983 + 13837729 13838040 AluYa5 310 + 0 310 87483 132 1 0 178 chain 17827 chr19 59128983 + 13850563 13850823 L1PA8 5853 - 6 261 133308 87 1 0 19 2 1 47 6 5 9 2 1 70 2 0 11 0 1 4 chain 12621 chr19 59128983 + 13850837 13851014 L1PA8 5853 + 5410 5587 149766 49 5 4 58 1 3 40 1 0 23 chain 5157 chr19 59128983 + 13851766 13851852 MLT1F2 592 + 476 569 193479 56 13 20 17 chain 21221 chr19 59128983 + 13864425 13864721 THE1C 375 - 43 348 123137 74 1 0 50 7 14 6 0 3 67 3 8 16 5 0 67 chain 6148 chr19 59128983 + 13870310 13870392 AluJr 308 + 15 111 183999 16 0 1 7 0 13 59 chain 6399 chr19 59128983 + 13908772 13908866 MER30 238 - 137 236 182033 65 4 9 25 chain 22669 chr19 59128983 + 13925975 13926260 AluSp 311 - 18 302 117218 161 3 0 34 8 10 79 chain 4598 chr19 59128983 + 13959465 13959590 MER53 195 + 75 181 199653 28 4 6 22 26 7 5 3 0 23 1 2 13 chain 20542 chr19 59128983 + 14087832 14088083 AluSg 306 + 6 257 125499 251 chain 22123 chr19 59128983 + 14112673 14112934 AluSq2 311 + 8 270 119685 125 0 1 136 chain 26871 chr19 59128983 + 14120072 14121112 MER41A 554 + 0 369 96742 144 673 0 78 8 11 96 1 0 40 chain 88778 chr19 59128983 + 14123023 14124330 L1PB1 5432 + 4116 5420 40089 11 0 26 17 1 0 39 1 0 24 11 12 245 0 12 116 3 0 156 2 0 38 5 3 297 3 2 24 1 0 9 1 0 10 6 2 9 3 1 51 2 1 16 1 0 40 9 8 11 5 0 12 9 0 19 3 1 4 1 0 14 2 0 24 1 0 32 3 2 16 chain 5632 chr19 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4245 chr19 59128983 + 14368619 14368669 MLT1C 463 - 350 400 203946 50 chain 13750 chr19 59128983 + 14388891 14389208 LTR12C 1709 + 776 1109 145443 61 0 1 51 46 99 16 44 6 58 2 17 7 15 0 17 chain 2001 chr19 59128983 + 14389028 14389049 LTR12C 1709 + 1033 1054 238621 21 chain 24932 chr19 59128983 + 14393091 14393382 AluSg7 307 + 15 307 105152 116 0 1 175 chain 2970 chr19 59128983 + 14416757 14416791 MER58A 224 + 45 79 225682 34 chain 26462 chr19 59128983 + 14421515 14421816 AluSq2 311 - 10 311 98197 301 chain 23135 chr19 59128983 + 14451356 14451636 AluY 311 + 0 284 114966 63 0 6 61 2 0 154 chain 32498 chr19 59128983 + 14454517 14455339 LTR7B 505 + 0 505 80025 50 0 2 63 0 1 72 71 0 46 6 58 44 303 0 89 1 0 11 2 7 37 6 4 21 chain 22504 chr19 59128983 + 14496939 14497216 AluY 311 + 30 308 118010 101 1 2 175 chain 23488 chr19 59128983 + 14510101 14510404 AluYa5 310 + 9 310 113186 55 39 37 209 chain 7287 chr19 59128983 + 14514486 14514581 AluJr 308 - 190 284 175532 9 1 0 85 chain 12694 chr19 59128983 + 14528298 14528439 L1PA5 6144 + 5985 6126 149468 141 chain 20881 chr19 59128983 + 14531770 14532020 AluSp 311 + 20 271 124351 74 0 1 176 chain 4659 chr19 59128983 + 14532794 14532846 MSTB 430 + 0 52 198961 52 chain 7595 chr19 59128983 + 14600719 14600825 MSTB2 466 + 36 137 173579 31 5 0 70 chain 17345 chr19 59128983 + 14615407 14615605 LTR17 781 - 455 653 134670 198 chain 9027 chr19 59128983 + 14617313 14617586 AluJo 314 + 13 291 165451 25 135 0 35 5 145 73 chain 23604 chr19 59128983 + 14642244 14642522 AluSp 311 - 22 300 112556 278 chain 7350 chr19 59128983 + 14688102 14688191 LTR9 672 - 583 672 175091 89 chain 3217 chr19 59128983 + 14706651 14706842 HAL1-2a_MD 234 - 118 202 220625 16 59 0 13 61 4 18 3 0 8 0 12 13 chain 4434 chr19 59128983 + 14737405 14737678 LTR16C 481 - 20 295 201541 23 203 205 47 chain 5696 chr19 59128983 + 14748640 14748724 LTR26 622 + 528 613 188145 37 6 7 41 chain 4989 chr19 59128983 + 14750544 14750619 MER34B 572 + 56 130 195260 26 8 7 41 chain 23391 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14820098 MSTA 426 + 0 411 119641 104 20 44 58 4 0 6 0 4 20 5 3 57 30 50 65 chain 2960 chr19 59128983 + 14820695 14820728 MER20 218 - 161 194 225880 33 chain 12814 chr19 59128983 + 14845548 14845970 LTR9 672 - 100 594 149000 24 76 63 45 22 99 15 1 0 4 110 122 4 1 0 99 1 0 3 1 0 16 chain 33365 chr19 59128983 + 14864700 14865119 MLT2A1 477 + 0 408 78627 169 4 1 9 0 1 24 0 1 180 4 0 14 6 0 9 chain 6579 chr19 59128983 + 14865150 14865224 MLT2A1 477 + 95 169 180624 74 chain 6977 chr19 59128983 + 14872896 14873013 MER4B 649 + 533 641 177621 31 1 0 16 0 1 5 9 1 46 1 0 8 chain 53902 chr19 59128983 + 14888324 14888948 L1PA6 6164 - 15 639 56426 624 chain 35448 chr19 59128983 + 14923054 14923527 LTR2B 499 + 9 499 75623 5 1 0 96 0 19 179 0 1 8 1 0 127 14 13 42 chain 40685 chr19 59128983 + 14927052 14927599 MLT2A2 560 + 0 558 68317 403 32 43 112 chain 14894 chr19 59128983 + 14929730 14929908 L1PA4 6152 - 9 202 141645 121 0 15 57 chain 14687 chr19 59128983 + 14931166 14931376 L1PA8 5853 + 5647 5853 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59128983 + 15055297 15055692 MER83 447 + 0 403 87879 60 0 3 8 1 6 103 1 0 104 12 13 106 chain 16159 chr19 59128983 + 15063104 15063299 AluY 311 + 26 214 137871 106 7 0 82 chain 44946 chr19 59128983 + 15069745 15070373 LTR10E 629 + 0 622 63123 10 0 1 56 0 3 90 17 14 122 4 3 77 1 0 43 0 1 44 3 0 84 25 22 52 chain 4215 chr19 59128983 + 15073384 15073437 L1MA8 2339 + 1711 1764 204347 53 chain 25821 chr19 59128983 + 15075665 15076324 L1PB3 3668 + 3122 3472 100787 22 1 0 8 1 0 130 305 0 8 1 0 100 2 1 81 chain 33222 chr19 59128983 + 15077404 15077855 L1PA8 5853 + 5411 5853 78845 87 2 1 65 1 0 44 2 0 68 22 19 45 2 1 19 1 0 93 chain 25143 chr19 59128983 + 15098936 15099234 LTR19B 566 - 266 564 104046 298 chain 1411 chr19 59128983 + 15099248 15099407 L1MA8 2339 + 1458 1611 156690 10 1 0 61 1 0 20 20 16 46 chain 9105 chr19 59128983 + 15099420 15099544 L1PB4 2604 + 2379 2500 165047 7 2 0 19 1 0 95 chain 24052 chr19 59128983 + 15100095 15100371 AluSp 311 - 34 311 110031 243 0 1 33 chain 311 chr19 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85 1 0 20 4 23 80 chain 12652 chr19 59128983 + 15243180 15243346 L1MA3 4352 - 263 481 149635 67 0 1 26 0 49 40 0 2 33 chain 2933 chr19 59128983 + 15268250 15268360 LTR16C 481 - 162 273 226477 26 63 64 21 chain 7065 chr19 59128983 + 15274701 15274815 L1MB8 1703 + 1451 1564 176977 45 13 12 56 chain 17155 chr19 59128983 + 15282488 15282692 AluSc5 308 - 17 222 135153 102 0 1 102 chain 22305 chr19 59128983 + 15282720 15282994 AluSp 311 - 25 299 118894 274 chain 6016 chr19 59128983 + 15293337 15294165 MER33 330 + 132 295 185082 25 7 8 18 5 9 17 700 29 10 0 1 46 chain 25108 chr19 59128983 + 15319785 15320076 AluSg 306 + 2 293 104236 291 chain 24490 chr19 59128983 + 15328332 15328627 AluSp 311 - 9 302 107598 14 2 0 279 chain 24502 chr19 59128983 + 15388653 15388945 AluY 311 + 18 311 107532 114 0 1 178 chain 25281 chr19 59128983 + 15444341 15444634 AluY 311 + 0 300 103309 47 0 6 79 0 1 167 chain 6784 chr19 59128983 + 15445093 15445351 AluJo 314 - 41 305 179074 46 145 11 19 5 145 43 chain 23852 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59128983 + 15626925 15627466 LTR10E 629 + 153 629 76335 11 0 2 20 63 0 110 4 3 255 30 28 41 1 0 6 chain 26088 chr19 59128983 + 15641336 15641700 THE1C 375 - 0 375 99677 197 8 21 35 3 0 95 4 5 22 chain 9965 chr19 59128983 + 15691093 15691222 MER85 139 + 0 139 160750 92 1 11 36 chain 4372 chr19 59128983 + 15699498 15699678 MLT2B2 565 - 88 367 202297 21 64 113 17 17 63 41 9 13 11 chain 93476 chr19 59128983 + 15706687 15707708 L1PA3long 6157 - 2563 3584 38489 1021 chain 229192 chr19 59128983 + 15707708 15710246 L1PA3long 6157 + 3600 6157 17345 346 0 1 1062 0 8 14 1 0 352 0 1 6 1 0 94 0 10 520 0 1 142 chain 3214 chr19 59128983 + 15712687 15712808 LOR1-int 1871 - 808 928 220688 38 68 67 15 chain 95130 chr19 59128983 + 15713169 15714551 L1PA15 4387 - 60 1423 38053 12 3 1 42 1 5 50 1 0 10 4 0 22 2 1 53 1 0 26 3 2 87 19 8 76 1 0 39 5 3 30 50 47 160 5 0 43 3 5 202 0 1 133 0 7 94 2 1 203 chain 134066 chr19 59128983 + 15718436 15720018 LTR12C 1709 - 0 1707 27186 481 0 4 67 0 1 38 3 1 5 1 0 46 0 1 207 0 2 8 0 118 188 0 1 103 0 1 435 chain 8361 chr19 59128983 + 15788925 15789041 MLT2B1 522 - 405 522 169071 19 2 3 95 chain 3982 chr19 59128983 + 15791438 15791484 MIRb 242 + 96 142 207652 46 chain 23495 chr19 59128983 + 15797820 15798102 AluY 311 + 15 298 113147 107 4 5 171 chain 112993 chr19 59128983 + 15804276 15805533 L1PA3long 6157 - 773 2034 33380 70 0 4 1187 chain 70685 chr19 59128983 + 15805533 15806317 L1PA3long 6157 + 5368 6157 48027 526 5 4 236 0 6 17 chain 153383 chr19 59128983 + 15816475 15818180 L1PA3long 6157 - 0 1713 24173 16 0 6 607 0 1 152 0 1 930 chain 111190 chr19 59128983 + 15818180 15819406 L1PA2 6032 + 4725 5952 33866 17 6 7 1203 chain 17338 chr19 59128983 + 15820076 15820300 AluY 311 + 72 294 134687 26 3 1 195 chain 4385 chr19 59128983 + 15822424 15822474 MLT2A2 560 - 0 50 202142 50 chain 69368 chr19 59128983 + 15824193 15824941 L1HS 6032 - 364 1112 48656 748 chain 27242 chr19 59128983 + 15824941 15825242 L1HS 6032 + 5733 6032 95457 285 2 0 14 chain 15845 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18 96 2 0 55 2 3 15 28 17 24 3 0 12 2 1 26 chain 7147 chr19 59128983 + 16329569 16329662 MER21B 843 - 424 516 176430 9 1 0 83 chain 7069 chr19 59128983 + 16330061 16330176 Tigger4b 360 - 1 116 176953 18 2 3 22 7 0 10 0 6 56 chain 32812 chr19 59128983 + 16332041 16332596 LTR10E 629 - 0 629 79512 6 1 0 55 11 9 242 1 0 14 112 89 39 0 102 63 1 0 10 chain 24239 chr19 59128983 + 16352525 16352813 AluSp 311 + 2 293 109004 98 0 1 161 1 3 28 chain 24199 chr19 59128983 + 16355393 16355651 AluYb8 318 + 34 292 109224 258 chain 24817 chr19 59128983 + 16362073 16362362 AluY 311 + 11 301 105785 121 0 1 168 chain 22852 chr19 59128983 + 16380603 16380899 AluSp 311 - 3 300 116325 71 3 4 222 chain 5639 chr19 59128983 + 16389946 16390036 MER20 218 + 45 131 188665 28 12 9 9 1 0 40 chain 4959 chr19 59128983 + 16396819 16396885 MADE1 96 + 1 94 195586 44 0 27 22 chain 24074 chr19 59128983 + 16407180 16407466 AluSp 311 + 11 297 109905 286 chain 4504 chr19 59128983 + 16418622 16418677 MER4A1 472 + 417 472 200738 55 chain 4713 chr19 59128983 + 16429457 16429517 MIRb 242 - 124 184 198353 60 chain 18355 chr19 59128983 + 16459395 16459653 AluJr 308 + 13 272 131920 116 12 14 98 3 2 29 chain 10574 chr19 59128983 + 16463116 16463262 Tigger2a 444 + 50 208 157941 28 0 9 29 4 7 85 chain 3288 chr19 59128983 + 16499254 16499308 L1MEf 1413 + 782 835 219215 24 5 4 25 chain 6183 chr19 59128983 + 16501692 16501769 Tigger5 388 - 0 77 183718 77 chain 8331 chr19 59128983 + 16529500 16529682 MLT1A0 366 + 73 254 169218 45 7 8 33 21 20 20 24 23 32 chain 22535 chr19 59128983 + 16554612 16554897 AluSx3 311 + 23 305 117871 8 4 0 101 0 1 172 chain 7777 chr19 59128983 + 16575475 16575607 MER30 238 - 0 106 172431 38 0 6 41 30 0 15 2 0 6 chain 27852 chr19 59128983 + 16586802 16587483 MER41A 554 - 167 537 93516 70 330 6 166 0 13 115 chain 3174 chr19 59128983 + 16617845 16617884 MER20 218 + 26 66 221443 18 0 1 21 chain 13670 chr19 59128983 + 16718463 16718649 MER30 238 + 0 236 145704 36 2 24 49 1 29 98 chain 3708 chr19 59128983 + 16752690 16752764 MER58A 224 - 150 224 211834 29 0 18 10 18 0 17 chain 10944 chr19 59128983 + 16779450 16779620 L1MC2 1988 - 324 503 156426 14 17 13 127 0 13 12 chain 8152 chr19 59128983 + 16783131 16783231 MER30 238 - 0 100 170216 100 chain 24962 chr19 59128983 + 16788967 16789259 AluSc 308 + 8 300 104995 292 chain 5192 chr19 59128983 + 16797787 16797869 MLT1A0 366 - 0 75 193132 23 2 0 9 5 0 43 chain 22296 chr19 59128983 + 16801522 16801823 AluY 311 + 10 296 118925 59 16 0 63 10 11 153 chain 19772 chr19 59128983 + 16845081 16845323 AluY 311 + 4 260 127899 139 1 15 102 chain 3994 chr19 59128983 + 16850760 16850806 MSTC 436 - 0 46 207466 46 chain 22060 chr19 59128983 + 16855838 16856168 THE1B 368 - 44 368 119966 84 1 0 10 3 0 16 0 1 4 30 25 8 0 2 174 chain 7122 chr19 59128983 + 16876895 16876992 MER58D 378 - 75 171 176608 47 1 0 49 chain 23139 chr19 59128983 + 16894172 16894457 AluSq 315 + 9 297 114943 123 0 3 16 7 7 139 chain 13004 chr19 59128983 + 16901274 16901441 L1PA8 5853 + 5688 5853 148233 52 2 1 19 1 0 93 chain 9780 chr19 59128983 + 16932040 16932210 MER41B 635 + 0 171 161700 101 36 37 33 chain 41151 chr19 59128983 + 16934063 16935518 MER41A 554 + 0 554 67713 155 318 0 32 0 10 173 603 9 51 0 1 123 chain 38841 chr19 59128983 + 16935519 16936057 MER41A 554 + 0 554 70962 193 16 28 148 2 1 60 1 2 37 1 6 46 2 1 32 chain 17000 chr19 59128983 + 16939364 16939560 AluYc 301 + 103 301 135596 11 0 2 185 chain 3294 chr19 59128983 + 16959781 16959818 tRNA-Lys-AAG 49 + 1 38 219101 37 chain 3452 chr19 59128983 + 17001498 17001607 MLT1C 463 + 57 165 216172 33 20 26 10 6 0 10 16 15 14 chain 18784 chr19 59128983 + 17016116 17016369 AluSp 311 + 9 301 130723 99 3 4 13 1 0 3 2 0 57 4 45 71 chain 21073 chr19 59128983 + 17022788 17023072 MER1A 529 + 233 520 123646 99 0 1 106 0 1 9 11 12 59 chain 6909 chr19 59128983 + 17052885 17052973 MSTA 426 + 263 371 178122 33 1 21 54 chain 3348 chr19 59128983 + 17061722 17061761 MLT1C 463 + 380 419 218084 39 chain 533669 chr19 59128983 + 17071854 17078306 L1PA6 6164 + 0 6161 3745 567 4 3 338 0 1 1423 1 2 466 0 4 379 1 2 431 0 2 85 1 0 93 3 0 134 299 0 409 3 4 13 1 0 322 0 1 708 0 4 713 0 4 45 5 0 8 chain 20609 chr19 59128983 + 17117869 17118126 AluSx 319 + 9 265 125264 31 3 2 223 chain 4331 chr19 59128983 + 17128386 17128465 MER20 218 - 98 164 202815 31 19 6 29 chain 29783 chr19 59128983 + 17141091 17141535 MER1A 529 - 0 432 85533 63 27 13 17 0 1 56 0 2 53 2 0 12 14 15 200 chain 4787 chr19 59128983 + 17142731 17142821 Tigger4a 237 - 147 237 197499 22 16 17 14 1 0 37 chain 23675 chr19 59128983 + 17146243 17146541 AluSp 311 + 5 299 112176 146 11 8 18 1 0 122 chain 3939 chr19 59128983 + 17157427 17157506 MLT1B 390 - 306 387 208286 23 23 25 33 chain 7043 chr19 59128983 + 17176223 17176327 MER21A 919 + 250 376 177165 42 8 30 54 chain 21711 chr19 59128983 + 17204864 17205134 AluSp 311 - 30 301 121343 17 8 9 245 chain 22434 chr19 59128983 + 17210375 17210645 AluYk4 311 + 32 301 118328 100 3 0 142 0 2 25 chain 18693 chr19 59128983 + 17211993 17212265 AluJr 308 - 15 297 130964 10 3 0 32 13 12 95 1 15 118 chain 44233 chr19 59128983 + 17248715 17249241 L1PA7 6471 - 1 530 63908 12 0 2 147 1 2 366 chain 9769 chr19 59128983 + 17250023 17250992 Tigger3a 397 - 151 368 161751 88 835 83 46 chain 26157 chr19 59128983 + 17258483 17258791 AluSp 311 - 0 311 99376 132 1 4 175 chain 4491 chr19 59128983 + 17281016 17281120 MLT1C 463 - 295 400 200891 17 25 26 18 1 2 24 1 0 18 chain 25831 chr19 59128983 + 17335433 17335734 AluY 311 + 6 307 100739 301 chain 25530 chr19 59128983 + 17361680 17361968 AluSp 311 - 23 311 102097 288 chain 42588 chr19 59128983 + 17397669 17398538 MER41A 554 + 0 554 65916 138 1 0 148 338 14 96 0 7 134 0 3 14 chain 27750 chr19 59128983 + 17405899 17406215 AluYb8 318 - 4 318 93867 251 2 0 63 chain 24450 chr19 59128983 + 17428038 17428344 AluY 311 + 2 301 107803 130 0 1 6 8 0 162 chain 21651 chr19 59128983 + 17454573 17454854 AluSc8 310 + 0 284 121567 48 6 5 79 0 3 39 0 1 109 chain 87777 chr19 59128983 + 17518049 17519054 LTR13 1007 - 0 1007 40455 308 2 0 341 1 0 54 1 0 189 1 7 108 chain 3289 chr19 59128983 + 17519602 17519638 MADE1 96 + 3 39 219193 36 chain 42589 chr19 59128983 + 17525948 17526582 LTR6A 649 + 10 649 65914 15 15 19 35 14 15 10 1 0 334 0 2 47 16 17 53 8 6 9 0 1 14 1 0 62 chain 25648 chr19 59128983 + 17531990 17532292 AluSp 311 - 12 311 101508 17 4 1 281 chain 24318 chr19 59128983 + 17553805 17554097 AluY 311 + 0 290 108552 64 2 0 15 1 0 53 0 1 157 chain 9475 chr19 59128983 + 17562404 17562521 L1MB5 1630 - 702 819 163191 117 chain 16686 chr19 59128983 + 17567644 17567839 AluY 311 + 69 263 136445 54 1 0 9 0 1 44 1 0 86 chain 23195 chr19 59128983 + 17569029 17569305 AluYc3 301 - 13 290 114697 170 4 5 102 chain 3252 chr19 59128983 + 17585394 17585429 MLT1F2 592 + 67 102 219978 35 chain 25030 chr19 59128983 + 17585432 17585734 AluSp 311 - 5 307 104634 28 2 1 11 0 1 261 chain 79948 chr19 59128983 + 17609355 17610349 LTR13 1007 - 0 1007 43621 31 3 1 268 2 0 7 1 0 71 2 1 242 4 5 13 4 24 261 0 3 6 6 1 73 chain 4000 chr19 59128983 + 17612940 17612987 MSTB2 466 - 415 462 207384 47 chain 23680 chr19 59128983 + 17613690 17614066 THE1B 368 - 0 368 112154 78 1 0 46 40 46 13 1 0 4 0 1 11 13 0 169 chain 5211 chr19 59128983 + 17614204 17614267 MER58A 224 - 105 168 192914 63 chain 88750 chr19 59128983 + 17656161 17657169 LTR13 1007 - 0 1007 40095 703 1 0 304 chain 24946 chr19 59128983 + 17665311 17665606 AluSg 306 + 1 298 105075 121 0 2 174 chain 1467 chr19 59128983 + 17703715 17704155 MER41A 554 - 7 130 131508 60 319 0 22 0 1 33 0 1 6 chain 25412 chr19 59128983 + 17704374 17704732 LTR7 482 + 0 482 102623 63 0 89 72 8 40 25 0 1 129 12 14 49 chain 286029 chr19 59128983 + 17704734 17708274 HERVH-int 3825 + 0 3825 14288 469 1 5 11 1 0 12 20 107 12 1 0 15 24 0 5 1 2 17 4 24 20 1 0 80 1 0 60 1 4 386 16 1 201 9 0 24 0 2 13 1 0 308 0 1 227 0 4 263 1 0 797 9 11 13 0 3 23 0 210 268 0 2 225 chain 777 chr19 59128983 + 17709028 17709261 MER41A 554 - 130 364 131508 29 0 1 48 2 1 5 0 1 149 chain 4102 chr19 59128983 + 17730665 17730734 MIRb 242 + 37 115 205909 13 9 18 47 chain 24722 chr19 59128983 + 17772611 17773265 MER1A 529 + 41 379 106312 37 10 6 110 316 4 181 chain 5044 chr19 59128983 + 17782820 17782889 MLT1J 494 + 97 165 194688 35 1 0 33 chain 10519 chr19 59128983 + 17822768 17822915 MER39B 650 + 261 409 158170 78 7 8 62 chain 25518 chr19 59128983 + 17828775 17829073 AluYc 301 + 1 301 102145 119 0 2 179 chain 3020 chr19 59128983 + 17891308 17891355 MER20 218 + 28 76 224614 16 5 6 26 chain 5705 chr19 59128983 + 17963891 17963957 MLT1A0 366 + 90 156 188068 66 chain 13595 chr19 59128983 + 17997553 17998843 L1MB7 1623 - 436 854 145995 66 6 10 55 1034 154 9 1 0 15 4 0 57 17 26 26 chain 15153 chr19 59128983 + 18010303 18010502 THE1A 353 + 151 353 140904 78 0 1 4 2 1 68 0 3 47 chain 123391 chr19 59128983 + 18010502 18012074 THE1A-int 1579 + 0 1574 29919 12 3 5 317 1 0 154 0 1 653 1 5 5 4 0 162 1 2 59 10 9 58 0 1 119 1 0 12 chain 10310 chr19 59128983 + 18028148 18028286 MER1A 529 + 255 408 159087 62 0 1 4 2 1 43 0 15 27 chain 159066 chr19 59128983 + 18028420 18030314 SVA_D 2077 + 8 2076 23456 17 5 0 12 0 19 48 0 27 85 1 0 509 23 26 10 3 0 143 0 134 48 1 0 97 48 0 169 0 49 37 0 1 181 1 0 456 chain 2472 chr19 59128983 + 18029422 18029450 SVA_D 2077 + 1310 1338 91127 28 chain 3631 chr19 59128983 + 18044797 18044851 MLT1B 390 - 11 66 213129 17 1 2 36 chain 3007 chr19 59128983 + 18045623 18045656 L1MB5 1630 - 242 275 224888 33 chain 6319 chr19 59128983 + 18088024 18088137 MLT1C 463 - 221 334 182648 42 9 13 25 3 0 16 1 0 17 chain 25299 chr19 59128983 + 18089973 18090263 AluY 311 + 13 304 103228 117 1 2 172 chain 144849 chr19 59128983 + 18115825 18117465 SVA_D 2077 - 5 2075 25349 131 0 20 433 0 351 99 0 2 49 1 2 26 6 43 13 1 0 690 0 8 165 3 15 23 chain 3489 chr19 59128983 + 18144254 18144292 MSTD 398 + 56 94 215528 38 chain 25313 chr19 59128983 + 18190441 18190731 AluYc 301 + 4 296 103158 115 1 3 174 chain 8360 chr19 59128983 + 18197086 18197190 MER2 342 + 210 314 169073 104 chain 22980 chr19 59128983 + 18203028 18203323 AluSp 311 + 11 305 115715 4 1 0 11 0 1 17 1 0 261 chain 16272 chr19 59128983 + 18300096 18300646 L1PA7 6471 - 4 229 137543 6 4 0 37 9 0 19 4 0 55 311 0 28 1 4 76 chain 26807 chr19 59128983 + 18302719 18303090 MER51B 395 + 0 381 96950 17 0 1 24 0 11 187 17 17 51 2 0 73 chain 26705 chr19 59128983 + 18334019 18334319 AluSp 311 - 11 311 97304 300 chain 2865 chr19 59128983 + 18348002 18348032 MIRb 242 + 95 125 227587 30 chain 21330 chr19 59128983 + 18425068 18425338 AluY 311 + 20 294 122756 98 5 0 15 1 0 104 0 10 47 chain 26006 chr19 59128983 + 18438678 18438974 AluSx1 309 + 5 301 99992 296 chain 23693 chr19 59128983 + 18442060 18442335 AluSp 311 - 25 300 112064 275 chain 20596 chr19 59128983 + 18465061 18465323 AluY 311 + 38 301 125308 83 5 6 174 chain 3339 chr19 59128983 + 18469369 18469429 MLT1C 463 - 341 397 218241 13 8 4 39 chain 81980 chr19 59128983 + 18513277 18514273 LTR5B 1012 + 0 1012 42770 128 1 14 271 1 0 75 1 0 233 1 5 252 0 1 33 chain 4172 chr19 59128983 + 18592373 18592422 MLT1D 503 - 374 423 204950 49 chain 4842 chr19 59128983 + 18601835 18601893 MLT2D 439 + 67 125 196863 58 chain 24655 chr19 59128983 + 18663365 18663661 AluSp 311 + 4 301 106693 93 0 1 203 chain 13906 chr19 59128983 + 18673767 18673982 MER30 238 + 0 238 144895 22 9 26 60 4 0 13 9 19 98 chain 25489 chr19 59128983 + 18681846 18682140 AluSp 311 + 8 302 102273 294 chain 27551 chr19 59128983 + 18708239 18708541 AluYa5 310 - 11 310 94503 170 1 0 36 2 0 93 chain 20559 chr19 59128983 + 18711617 18711901 AluJr 308 - 11 294 125436 14 2 0 92 2 0 7 0 1 52 5 7 110 chain 24901 chr19 59128983 + 18812727 18813021 AluSp 311 - 6 300 105336 294 chain 23660 chr19 59128983 + 18953537 18953810 AluSp 311 + 11 296 112248 116 0 12 157 chain 24265 chr19 59128983 + 18983324 18983621 AluSq10 312 - 12 311 108876 257 0 1 28 1 2 11 chain 35439 chr19 59128983 + 19028471 19029278 LTR19B 566 + 80 566 75632 9 0 5 45 0 1 12 0 2 6 19 18 139 332 0 161 1 0 35 0 1 38 0 4 10 chain 23931 chr19 59128983 + 19041538 19041837 AluSx3 311 + 2 298 110746 75 0 1 54 0 1 152 5 0 13 chain 4752 chr19 59128983 + 19076793 19076848 LTR9 672 + 278 333 197890 55 chain 25029 chr19 59128983 + 19084314 19084600 AluSp 311 - 25 311 104643 286 chain 24679 chr19 59128983 + 19092978 19093279 AluSp 311 + 0 295 106553 29 6 0 266 chain 12954 chr19 59128983 + 19188043 19188297 L1MB3 1562 - 14 241 148409 24 1 0 80 53 28 57 9 8 30 chain 8466 chr19 59128983 + 19190172 19190347 L1MB5 1630 - 92 266 168484 17 1 0 9 36 37 78 8 7 26 chain 9186 chr19 59128983 + 19246687 19246798 FLAM_A 137 - 5 116 164627 111 chain 23926 chr19 59128983 + 19250265 19250552 AluSp 311 - 15 302 110773 287 chain 21390 chr19 59128983 + 19274781 19275063 AluSp 311 - 17 298 122539 19 0 1 120 6 5 81 1 0 55 chain 25454 chr19 59128983 + 19298349 19298645 AluSc5 308 - 12 308 102439 296 chain 25429 chr19 59128983 + 19395680 19395975 AluYk4 311 - 9 311 102551 21 0 1 60 1 7 213 chain 7387 chr19 59128983 + 19400635 19400725 MER21B 843 + 349 439 174861 90 chain 22040 chr19 59128983 + 19407202 19407484 AluY 311 + 28 311 120068 28 1 2 60 1 0 14 0 1 178 chain 24780 chr19 59128983 + 19624214 19624496 AluSg4 309 + 4 286 105997 282 chain 30223 chr19 59128983 + 19696353 19696781 LTR7B 505 + 0 498 84120 108 0 10 66 6 68 28 5 7 47 7 5 26 1 0 76 14 13 44 chain 22917 chr19 59128983 + 19775314 19775614 AluY 311 + 0 310 116026 52 0 16 65 13 4 51 0 3 119 chain 3931 chr19 59128983 + 19806898 19806947 L1MB2 1706 - 1533 1582 208390 49 chain 3933 chr19 59128983 + 19807832 19807888 PABL_A 660 + 187 245 208372 18 1 3 37 chain 3475 chr19 59128983 + 19808023 19808063 MER51C 639 + 47 87 215737 40 chain 13399 chr19 59128983 + 19809545 19809733 PABL_A 660 + 0 191 146726 84 0 9 44 2 1 14 4 0 26 1 0 13 chain 31102 chr19 59128983 + 19826180 19826655 LTR15 485 - 7 485 82339 17 4 5 14 2 0 5 1 0 51 15 17 28 1 0 62 5 9 30 4 1 64 0 2 22 0 2 122 5 4 23 chain 414293 chr19 59128983 + 19833091 19838007 L1P2 5180 - 230 5178 9689 94 0 2 389 14 0 105 0 1 115 0 1 9 6 14 270 4 0 262 1 0 272 0 2 810 0 1 463 0 3 330 0 2 305 0 1 59 1 0 306 2 0 179 0 25 83 1 3 52 1 0 5 1 0 272 1 0 8 1 0 260 1 0 93 0 11 141 chain 7864 chr19 59128983 + 19852323 19852439 MER4A1 472 - 1 121 171912 66 15 19 35 chain 5754 chr19 59128983 + 19852919 19852989 MER4A 717 - 125 195 187606 70 chain 12374 chr19 59128983 + 19867662 19867859 MSTA 426 - 219 424 150737 41 25 31 31 3 5 97 chain 24710 chr19 59128983 + 19872329 19872645 AluSp 311 + 4 304 106383 231 20 4 65 chain 115988 chr19 59128983 + 19880272 19881642 SVA_B 1603 + 6 1603 32463 13 49 34 131 0 1 591 0 80 64 0 159 316 0 2 206 chain 206928 chr19 59128983 + 19892371 19894835 Harlequin-int 5206 - 2613 5081 18723 408 0 1 68 0 4 66 2 1 267 1 2 354 2 3 125 3 0 13 2 1 168 2 9 421 1 0 200 3 0 112 1 0 70 1 0 164 0 1 10 chain 40015 chr19 59128983 + 19896605 19897067 LTR2 463 - 0 463 69301 100 0 1 362 chain 94713 chr19 59128983 + 19914818 19915884 L1PA6 6164 + 5072 6147 38162 54 0 6 183 0 3 829 chain 14115 chr19 59128983 + 19931528 19931704 MER57E3 465 + 261 437 144166 176 chain 5606 chr19 59128983 + 19933700 19933768 LTR8 732 - 0 68 189021 68 chain 30853 chr19 59128983 + 19933768 19934173 LTR66 600 + 0 400 82765 33 1 2 146 7 0 204 0 1 14 chain 5206 chr19 59128983 + 19934179 19934238 LTR66 600 + 335 394 192954 59 chain 43910 chr19 59128983 + 19934238 19934833 LTR66 600 + 0 574 64322 194 0 2 68 0 1 37 2 0 111 4 0 46 32 14 101 chain 37283 chr19 59128983 + 19935052 19935957 HERVL66-int 1251 + 122 876 73109 30 31 0 10 7 0 19 54 48 26 28 0 44 21 2 16 88 57 117 7 5 60 0 7 14 22 19 44 5 4 34 1 0 68 11 9 57 16 9 9 20 0 46 chain 45135 chr19 59128983 + 19943312 19943956 LTR66 600 - 0 594 62886 107 1 33 47 12 0 14 71 0 255 0 1 137 chain 38127 chr19 59128983 + 19947030 19947441 L1PA2 6032 - 2 417 71944 234 0 4 177 chain 28458 chr19 59128983 + 19948728 19949026 AluYa5 310 - 12 310 91341 298 chain 85571 chr19 59128983 + 19965989 19967228 LTR70 1284 - 1 1261 41317 7 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20069498 20070502 LTR13 1007 - 0 1007 43775 31 3 1 159 0 1 117 1 5 307 6 7 55 1 0 56 0 2 193 2 0 73 chain 43220 chr19 59128983 + 20075099 20075744 LTR66 600 + 0 600 65147 118 6 4 215 71 0 75 4 0 46 0 32 110 chain 29841 chr19 59128983 + 20086634 20086973 LTR14A 344 - 0 344 85313 168 0 5 171 chain 31330 chr19 59128983 + 20097603 20097950 L1PA3long 6157 + 5810 6157 81934 347 chain 29102 chr19 59128983 + 20101798 20102196 LTR66 600 - 191 588 88541 33 3 0 5 4 7 241 14 13 98 chain 37551 chr19 59128983 + 20104766 20105793 HERVL66-int 1251 - 373 1221 72754 49 20 0 8 16 9 57 11 9 41 0 4 23 1 0 41 1 0 47 3 0 30 12 1 62 5 4 61 123 94 16 12 7 17 28 8 35 28 0 64 16 10 19 7 0 10 31 0 23 23 22 11 12 10 15 2 1 13 13 6 21 chain 5509 chr19 59128983 + 20106482 20106550 LTR66 600 - 206 274 189953 68 chain 29191 chr19 59128983 + 20128891 20129202 AluYa5 310 - 0 310 88096 217 1 0 93 chain 24360 chr19 59128983 + 20145305 20145604 AluSp 311 + 0 303 108318 125 0 5 126 1 0 47 chain 39424 chr19 59128983 + 20156426 20156923 LTR10C 591 + 0 591 70125 106 0 72 208 0 20 104 0 1 4 14 15 61 chain 42579 chr19 59128983 + 20167944 20168441 MER9a3 513 + 2 511 65928 30 0 12 467 chain 35640 chr19 59128983 + 20170416 20170867 LTR7 482 + 0 482 75354 264 0 31 9 2 1 114 13 14 49 chain 22547 chr19 59128983 + 20170868 20171206 LTR70 1284 - 13 346 117816 35 2 1 25 21 20 32 1 0 7 2 0 213 chain 3450 chr19 59128983 + 20172112 20172152 LTR70 1284 - 170 210 216206 40 chain 126709 chr19 59128983 + 20174333 20176102 SVA_D 2077 - 1 2077 28879 349 318 0 268 5 543 151 0 40 75 0 40 485 0 1 97 1 7 20 chain 12617 chr19 59128983 + 20176583 20176728 LTR66 600 + 0 145 149785 145 chain 28348 chr19 59128983 + 20176728 20177026 AluYa5 310 - 11 309 91773 298 chain 41337 chr19 59128983 + 20177750 20178734 HERVL66-int 1251 + 155 908 67486 7 7 0 19 16 10 16 16 16 29 28 0 47 20 1 15 13 8 15 15 0 27 21 9 122 1 0 63 12 1 30 3 0 46 12 11 32 1 0 65 22 20 47 17 10 8 20 0 49 107 14 16 chain 28907 chr19 59128983 + 20180441 20180750 AluYb8 318 + 0 307 89429 132 2 0 175 chain 31342 chr19 59128983 + 20183282 20187934 LTR66 600 - 0 600 81908 102 3818 104 218 329 0 44 9 0 132 chain 3878 chr19 59128983 + 20184424 20184606 HERVL66-int 1251 - 141 309 209192 13 1 0 21 99 87 17 7 6 24 chain 3695 chr19 59128983 + 20189555 20189603 LTR10B1 532 + 298 345 212015 11 1 0 36 chain 70714 chr19 59128983 + 20193150 20194109 LTR5_Hs 974 + 0 971 48063 13 0 4 437 5 9 163 10 9 25 0 1 13 3 5 37 0 2 58 7 7 34 6 0 11 0 6 137 chain 36237 chr19 59128983 + 20198508 20198944 LTR7 482 - 13 482 74571 36 12 14 123 0 31 265 chain 295680 chr19 59128983 + 20202745 20207142 HERVH-int 3825 - 0 3825 13664 111 0 3 695 1 0 43 165 0 1045 1 2 5 1 0 321 1 0 100 375 35 20 23 14 202 15 0 145 13 14 118 0 1 105 0 3 64 2 1 49 1 0 30 2 1 19 40 0 23 1 0 7 20 30 15 7 0 24 1 0 10 1 0 36 5 0 45 2 0 431 0 1 57 chain 37889 chr19 59128983 + 20207144 20207590 LTR7 482 - 0 482 72297 49 12 14 122 0 31 123 0 3 140 chain 54558 chr19 59128983 + 20210575 20211190 HERV17-int 4347 + 3732 4347 55991 615 chain 118469 chr19 59128983 + 20248109 20249434 SVA_D 2077 + 57 2077 31625 495 0 1 41 0 40 32 1 2 16 0 117 115 1 539 604 1 0 12 1 0 6 chain 29348 chr19 59128983 + 20254683 20254993 AluYg6 310 + 0 310 87306 310 chain 134023 chr19 59128983 + 20259576 20261511 SVA_F 1814 - 0 1479 27203 10 2 0 617 1 0 10 1 0 61 314 0 150 3 18 12 148 0 48 5 0 553 chain 6313 chr19 59128983 + 20260278 20260368 SVA_F 1814 - 776 890 134525 62 0 1 13 9 33 4 1 0 1 chain 18989 chr19 59128983 + 20260368 20260575 SVA_F 1814 - 650 921 130136 156 0 64 51 chain 1270 chr19 59128983 + 20260757 20260793 SVA_F 1814 - 687 723 129147 36 chain 2019 chr19 59128983 + 20260796 20260819 SVA_F 1814 - 803 826 208131 23 chain 2102 chr19 59128983 + 20260819 20260844 SVA_F 1814 - 777 802 182754 25 chain 4771 chr19 59128983 + 20260844 20260905 SVA_F 1814 - 866 926 171655 51 1 0 9 chain 60988 chr19 59128983 + 20262842 20263501 SVA_D 2077 - 0 660 52340 6 1 0 373 0 2 279 chain 46190 chr19 59128983 + 20264311 20264929 LTR66 600 + 0 600 61857 268 0 1 39 0 1 106 2 0 58 18 0 127 chain 292533 chr19 59128983 + 20265774 20270383 HERVH-int 3825 + 0 3825 13857 310 0 2 176 2 0 44 5 0 10 64 0 28 1 0 9 2 1 24 29 0 15 0 37 42 2 1 56 0 1 7 0 2 13 0 3 134 0 3 305 15 0 74 968 0 40 0 10 221 0 2 115 6 33 1292 0 2 84 28 238 377 0 3 111 chain 71299 chr19 59128983 + 20267146 20268109 LTR5_Hs 974 - 0 974 47799 62 1 0 5 0 1 9 0 6 20 20 18 19 8 15 163 1 0 188 0 1 51 8 0 130 0 1 118 1 0 39 5 13 115 chain 39948 chr19 59128983 + 20271642 20272093 LTR7 482 + 0 482 69397 261 0 31 190 chain 36496 chr19 59128983 + 20272720 20273789 HERVL66-int 1251 + 128 910 74243 24 83 39 37 56 28 36 150 76 130 1 0 58 16 5 29 3 0 50 6 5 34 1 0 50 28 26 57 53 26 40 107 12 20 chain 16734 chr19 59128983 + 20276880 20277128 LTR66 600 - 345 600 136300 60 7 26 72 12 0 97 chain 3184 chr19 59128983 + 20277128 20277165 LTR8 732 + 664 701 221221 37 chain 132637 chr19 59128983 + 20286141 20287623 SVA_D 2077 - 0 2015 27491 632 0 3 36 1 490 25 0 40 310 0 1 478 chain 64384 chr19 59128983 + 20288684 20290282 LTR70 1284 + 292 1281 50850 5 0 1 42 621 1 82 13 18 86 0 4 339 23 24 59 1 2 88 0 2 52 37 37 59 1 0 43 1 0 40 1 0 5 chain 24545 chr19 59128983 + 20292068 20292373 AluY 311 + 2 307 107281 130 0 1 127 4 6 36 3 0 5 chain 125344 chr19 59128983 + 20324673 20326120 SVA_D 2077 + 8 2075 29287 16 7 1 662 0 157 40 0 83 26 1 0 41 1 4 4 0 1 47 1 0 49 0 389 168 0 2 54 2 1 314 6 0 8 chain 162513 chr19 59128983 + 20337003 20339288 L1P2 5180 - 2029 4016 22984 187 1 0 271 0 3 331 3 1 39 3 0 109 301 0 100 0 3 703 3 6 234 chain 209699 chr19 59128983 + 20339288 20341810 L1PA5 6144 + 3135 6135 18510 20 2 0 7 1 0 4 5 4 64 9 13 90 4 0 555 0 2 60 0 3 38 0 457 326 0 2 1004 0 10 100 0 7 86 16 14 15 0 2 94 0 1 22 chain 27667 chr19 59128983 + 20348011 20348314 AluYf4 310 + 0 303 94162 303 chain 19206 chr19 59128983 + 20349751 20349995 LTR66 600 + 155 401 129515 76 0 1 32 1 2 135 chain 26988 chr19 59128983 + 20350237 20350755 HERVL66-int 1251 - 373 850 96321 49 20 0 8 16 9 57 11 9 12 8 9 47 1 0 24 19 18 41 46 36 63 1 0 95 chain 45417 chr19 59128983 + 20351080 20351770 LTR66 600 - 0 600 62574 23 1 0 104 2 1 12 18 1 41 2 0 69 70 0 84 0 1 264 chain 20598 chr19 59128983 + 20353699 20353952 MER57E3 465 - 53 306 125303 253 chain 19441 chr19 59128983 + 20359298 20359546 LTR5_Hs 974 - 681 974 128848 4 0 1 172 0 41 25 8 11 39 chain 40603 chr19 59128983 + 20368652 20369162 LTR6B 557 + 0 557 68433 22 0 27 23 0 15 257 0 1 9 0 1 140 0 1 4 0 1 34 0 1 21 chain 29253 chr19 59128983 + 20371054 20371359 AluYb8 318 + 0 305 87780 305 chain 28963 chr19 59128983 + 20372196 20372599 LTR7 482 - 5 480 89163 12 0 2 167 1 32 36 6 7 106 10 48 65 chain 84812 chr19 59128983 + 20377310 20378419 LTR70 1284 - 146 1277 41588 193 20 26 47 1 2 220 0 1 311 0 1 34 0 1 64 0 9 133 0 3 86 chain 493090 chr19 59128983 + 20388405 20395783 HERVK-int 6823 + 19 6520 7219 19 5 4 20 7 6 6 1 0 26 1 0 18 1 0 15 2 0 33 0 5 131 1 0 4 0 1 6 9 10 100 0 2 30 1 0 200 11 9 24 1 0 19 1 0 8 97 1 205 0 3 95 6 5 61 0 1 113 3 4 195 1 0 58 1 0 273 1 8 9 0 1 80 18 12 135 0 1 192 1 0 1080 1 0 4 0 1 600 1 2 213 0 1 488 0 1 401 302 0 33 16 1 450 0 2 64 39 37 91 1 0 85 5 4 22 1 0 100 2 1 32 4 3 123 1 0 50 4 1 4 1 0 9 4 2 77 2 0 5 1 0 24 35 28 14 533 117 9 2 0 12 1 0 9 8 6 12 2 0 29 8 3 7 1 0 3 1 0 10 10 6 10 12 6 6 1 0 8 1 0 5 1 0 26 1 0 5 1 0 11 chain 28004 chr19 59128983 + 20395213 20395549 HERV-Fc1_LTR1 345 + 0 345 92989 229 3 13 38 1 0 65 chain 122826 chr19 59128983 + 20406576 20408031 SVA_D 2077 + 14 2070 30105 11 1 0 4 0 16 126 0 10 357 0 1 60 24 22 103 0 3 38 3 0 33 0 3 40 2 577 27 1 0 625 chain 11012 chr19 59128983 + 20411403 20411538 L1PA2 6032 - 0 132 156154 6 3 0 126 chain 28954 chr19 59128983 + 20420472 20420778 AluYa5 310 - 4 310 89204 306 chain 30033 chr19 59128983 + 20420778 20421123 LTR10C 591 - 246 591 84706 345 chain 14001 chr19 59128983 + 20430701 20430855 L1PA4 6152 - 6 160 144573 154 chain 29524 chr19 59128983 + 20441104 20441424 AluYb8 318 - 2 318 86549 193 4 0 123 chain 21970 chr19 59128983 + 20455345 20455638 AluSq10 312 + 0 289 120355 108 5 4 162 3 0 15 chain 2588 chr19 59128983 + 20468107 20468211 LTR66 600 + 20 124 72623 104 chain 46141 chr19 59128983 + 20468216 20468799 LTR10C 591 - 0 587 61903 79 0 2 82 34 36 388 chain 20380 chr19 59128983 + 20468801 20469620 LTR66 600 + 124 579 72623 56 2 0 109 3 5 107 397 3 9 2 0 44 0 32 90 chain 5396 chr19 59128983 + 20469086 20469152 LTR66 600 + 337 403 191024 66 chain 37384 chr19 59128983 + 20470727 20471231 LTR10F 562 + 0 562 72982 122 1 58 49 0 24 13 20 0 7 3 0 289 chain 200186 chr19 59128983 + 20474760 20480917 HERVS71-int 4705 + 676 4626 19194 5 1 0 17 1 0 4 1 0 10 24 18 9 1 0 4 4 1 10 2 0 6 74 25 23 4 0 154 17 1 9 1 0 4 3 5 352 10 11 258 1 0 374 1 0 323 1656 3 10 1 0 9 2 0 12 1 0 5 55 27 12 14 7 16 1 0 8 7 4 11 4 1 7 1 0 7 75 56 12 1 0 12 4 1 37 1 0 54 1 0 18 2 1 40 7 5 13 3 1 9 1 0 29 15 9 10 2 1 13 4 2 9 1 0 16 61 46 12 2 0 26 1 0 5 2 0 35 2 0 10 1 0 10 1 0 13 79 7 21 1 0 19 3 1 10 1 0 18 71 54 11 17 5 5 0 3 5 1 0 9 1 0 7 1 0 9 9 5 38 1 0 12 36 30 17 2 1 13 1 0 11 3 0 5 2 1 12 15 9 15 20 14 9 1 0 5 1 0 27 35 29 16 1 0 16 3 1 57 25 20 6 1 0 29 1 0 33 8 5 52 2 0 16 1 0 34 3 2 10 1 0 8 1 0 15 2 0 10 3 0 5 1 0 28 1 0 5 1 0 7 2 0 4 1 0 28 10 6 19 1 0 4 2 1 6 1 0 34 3 0 22 1 0 17 14 11 21 2 0 14 1 0 21 1 0 45 1 0 6 5 3 12 26 21 43 1 0 8 1 0 8 2 1 14 2 0 18 2 0 7 2 0 22 118 80 19 0 62 10 161 42 20 2 1 13 21 13 15 89 65 7 3 0 26 31 23 14 3 0 6 2 0 9 1 0 7 1 0 5 4 0 8 1 0 10 chain 110627 chr19 59128983 + 20483460 20486115 HERVIP10FH-int 2884 + 149 2824 34047 34 0 1 8 17 16 10 0 1 165 1 0 5 0 1 9 6 5 141 24 3 79 1 0 55 1 15 371 0 3 127 733 1076 29 11 10 144 1 2 5 1 0 17 308 0 57 0 2 94 6 5 20 1 0 46 1 0 50 1 0 16 1 0 14 10 4 35 chain 34985 chr19 59128983 + 20486413 20486881 LTR10F 562 + 0 554 76201 108 0 84 37 0 24 12 21 0 8 1 0 281 chain 11518 chr19 59128983 + 20487110 20487247 LTR7B 505 + 2 139 154226 137 chain 12645 chr19 59128983 + 20492002 20492160 L1PA5 6144 - 0 156 149654 11 3 1 144 chain 67540 chr19 59128983 + 20494473 20495413 LTR70 1284 + 343 1283 49421 469 0 1 50 1 2 63 13 17 146 13 9 8 0 4 40 2 0 6 1 0 30 6 5 43 1 0 40 1 0 7 chain 136458 chr19 59128983 + 20585529 20587576 SVA_F 1814 + 335 1814 26751 553 1 0 59 580 15 49 1 0 160 1 0 16 1 0 331 0 2 284 1 0 10 chain 28631 chr19 59128983 + 20586143 20586573 SVA_F 1814 + 962 1291 90602 25 49 0 104 51 0 183 1 0 17 chain 9305 chr19 59128983 + 20586595 20586722 SVA_F 1814 + 962 1089 124083 127 chain 98704 chr19 59128983 + 20612342 20613687 Harlequin-int 5206 - 2948 5080 37100 210 21 23 60 8 14 286 0 778 255 0 1 146 3 0 122 4 9 35 0 1 10 0 2 12 1 0 4 0 2 65 4 1 72 4 1 7 3 0 7 0 3 6 chain 20776 chr19 59128983 + 20615424 20615710 LTR66 600 + 300 600 124692 112 4 0 36 0 1 4 0 2 14 5 20 111 chain 11861 chr19 59128983 + 20615906 20616219 HERVL66-int 1251 + 121 338 152787 31 32 0 10 7 0 19 16 10 61 28 0 47 20 1 17 9 5 16 chain 38568 chr19 59128983 + 20620029 20620588 LTR66 600 + 7 575 71342 87 1 0 309 34 14 27 1 34 10 2 1 71 2 0 15 chain 39333 chr19 59128983 + 20623611 20624630 HERVL66-int 1251 - 381 1221 70276 32 53 26 43 26 24 10 0 1 6 1 0 51 1 0 27 19 18 42 3 0 30 12 1 63 1 0 59 3 4 59 21 9 27 15 0 8 55 31 44 28 0 64 16 10 19 7 0 10 32 0 31 80 70 21 chain 79206 chr19 59128983 + 20649136 20650105 LTR5_Hs 974 + 0 974 43942 50 0 3 7 0 2 396 1 5 357 25 21 133 chain 29675 chr19 59128983 + 20652216 20652883 HERVL66-int 1251 - 342 870 85918 19 107 12 49 20 0 8 19 12 25 50 50 56 1 0 34 6 5 49 3 0 30 12 1 63 1 0 115 chain 174561 chr19 59128983 + 20659485 20662668 HERVH48-int 3304 - 138 3105 21532 11 2 0 69 63 47 18 0 2 10 0 1 37 6 3 45 1 0 5 2 0 15 5 7 10 13 5 21 14 10 8 3 0 18 227 125 15 52 47 45 1 0 19 1 0 3 1 0 29 0 1 49 3 5 92 0 1 48 5 4 47 1 0 11 2 1 70 2 0 18 1 0 109 0 1 80 1 4 13 0 11 28 2 1 7 1 0 281 1 0 9 10 7 8 0 6 8 0 1 50 1 0 84 5 8 17 16 9 81 20 19 8 1 0 10 3 0 84 0 2 38 11 5 10 3 0 16 1 0 26 2 0 7 0 1 12 1 0 16 1 0 4 2 0 25 3 0 32 2 0 13 1 0 22 1 0 11 3 0 117 25 17 69 1 0 31 1 0 43 11 9 56 3 1 4 1 0 17 4 0 17 10 16 53 3 1 7 1 0 81 13 7 10 4 1 12 1 0 73 1 0 5 6 2 65 1 0 4 2 1 4 4 0 10 1 0 8 2 1 12 13 0 35 4 3 19 chain 491408 chr19 59128983 + 20665252 20671376 L1PA6 6164 + 0 6162 7302 178 1 2 47 44 36 246 0 1 467 1 2 311 0 1 4 1 0 260 6 7 318 0 1 453 7 5 220 0 18 505 0 4 22 5 4 77 1 2 364 13 22 127 1 0 191 2 0 56 1 2 228 0 1 227 1 3 237 1 0 472 0 1 44 0 1 25 0 1 122 8 15 74 1 13 8 13 0 407 0 3 327 chain 533421 chr19 59128983 + 20673131 20679413 L1PA4 6152 + 6 6152 3788 475 5 6 88 0 4 663 1 0 53 144 0 447 0 1 989 4 0 439 2 1 5 1 0 527 7 10 773 1 0 816 0 3 172 0 4 670 chain 70743 chr19 59128983 + 20683039 20684029 MER11A 1151 - 11 1145 48043 222 1 10 42 14 51 66 0 4 5 1 0 52 3 6 45 16 16 74 0 7 8 6 0 88 0 1 73 0 4 72 4 0 64 1 0 31 0 91 102 chain 89298 chr19 59128983 + 20684831 20690311 HERVK11-int 2540 - 302 1854 39890 129 2 6 64 3 0 6 7 9 189 1 0 104 9 4 41 27 21 260 0 3 113 0 7 28 12 1 27 29 18 14 8 5 9 4 3 47 1 0 4 0 1 4 1 0 25 0 3 28 2 0 21 59 43 16 66 60 13 1201 0 8 2626 0 13 1 0 13 3 0 44 32 9 7 5 0 18 15 7 21 2 0 21 7 0 14 5 0 51 chain 69078 chr19 59128983 + 20691538 20692534 MER11A 1151 - 15 1150 48774 216 26 0 14 18 87 72 0 4 55 3 6 135 0 7 8 6 0 88 0 1 59 4 5 85 4 0 62 8 7 41 0 91 92 chain 492656 chr19 59128983 + 20693164 20700118 HERVE_a-int 7009 - 19 6849 7240 24 32 24 15 4 2 34 5 3 19 2 1 14 3 1 6 1 0 32 1 0 25 3 1 54 3 0 26 4 0 11 2 1 53 7 5 27 1 0 5 1 0 46 1 0 21 1 0 37 10 7 5 1 0 13 5 4 9 1 0 32 1 0 46 1 0 45 0 1 88 2 0 80 1 0 14 1 0 18 2 0 53 9 7 14 2 1 102 2 0 257 21 19 81 2 1 16 7 6 41 1 0 7 1 0 74 1 0 9 1 0 21 7 6 113 9 0 1161 0 8 112 7 8 185 0 1 29 0 5 245 1 0 583 1 0 405 2 1 99 2 3 65 7 6 33 7 6 7 1 0 144 1 0 8 14 12 10 13 8 29 6 4 25 2 1 94 1 0 12 1 0 24 1 0 37 4 3 4 0 1 37 2 1 31 17 15 23 1 24 48 2 1 37 1 0 43 1 0 18 1 0 4 2 1 10 56 52 16 1 0 115 1 0 15 3 2 22 1 0 57 3 1 52 1 0 9 1 0 5 1 0 10 1 0 7 1 0 5 1 0 22 1 0 16 1 0 3 1 0 17 10 6 11 1 0 6 2 1 15 1 0 21 1 0 19 0 2 31 1 0 13 7 5 36 3 2 30 2 1 73 1 0 8 1 0 26 1 0 66 2 1 23 9 7 52 1 0 10 3 2 31 2 1 14 2 1 9 0 5 96 1 0 34 1 0 54 1 0 21 2 1 43 1 0 25 4 2 34 29 1 17 1 0 6 23 38 6 1 0 9 1 0 7 1 0 5 2 1 20 5 3 6 2 0 73 3 1 25 chain 35832 chr19 59128983 + 20700907 20701350 LTR2 463 - 0 463 75088 232 0 5 11 5 0 26 1 0 6 0 21 162 chain 15693 chr19 59128983 + 20703619 20703806 HERVH-int 3825 - 0 188 139294 181 0 1 6 chain 6609 chr19 59128983 + 20707867 20708055 L1MB2 1706 - 42 213 180386 41 1 0 4 86 70 56 chain 165534 chr19 59128983 + 20711920 20714080 SVA_D 2077 - 12 2077 22584 124 0 20 361 2 1 158 60 8 4 0 1 48 1 0 96 147 0 159 0 51 47 0 1 39 10 0 27 5 4 8 1 0 275 0 40 536 0 3 5 6 11 10 1 0 3 1 0 9 1 0 6 0 1 5 1 0 4 chain 3729 chr19 59128983 + 20712578 20712625 SVA_D 2077 - 689 734 72569 34 1 0 7 1 0 4 chain 11664 chr19 59128983 + 20712774 20712921 SVA_D 2077 - 960 1109 72569 79 0 2 68 chain 39855 chr19 59128983 + 20720887 20721424 LTR10C 591 + 0 564 69526 38 5 9 9 0 4 67 8 7 4 0 1 222 0 2 103 1 3 13 0 14 12 0 2 16 5 4 34 chain 28872 chr19 59128983 + 20742701 20743003 AluYb8 318 + 11 313 89577 302 chain 3267 chr19 59128983 + 20749443 20749480 LTR8 732 - 31 68 219633 37 chain 36323 chr19 59128983 + 20750245 20751350 HERVL66-int 1251 + 50 910 74472 7 1 0 13 2 1 14 13 11 11 80 48 7 7 0 19 16 10 22 1 2 38 28 7 39 20 1 17 13 8 13 61 34 96 8 24 4 1 0 63 12 1 30 7 4 46 5 4 34 1 0 68 21 19 44 56 29 40 108 13 19 chain 15823 chr19 59128983 + 20753918 20754112 LTR66 600 + 6 200 138881 194 chain 35650 chr19 59128983 + 20793856 20794381 LTR61 567 + 0 518 75337 22 3 0 33 20 14 45 0 1 71 7 5 29 16 13 113 0 5 124 0 1 42 chain 34720 chr19 59128983 + 20800363 20800931 LTR61 567 + 0 558 76594 22 14 11 22 17 11 49 0 1 75 2 0 18 4 0 20 13 7 104 25 30 82 0 4 19 0 1 82 chain 537899 chr19 59128983 + 20810587 20816745 L1PA4 6152 - 1 6152 3165 773 1 0 57 7 6 655 0 1 307 0 4 1165 1 0 86 0 2 18 0 5 508 13 1 250 2 0 695 0 1 458 0 3 576 1 0 39 0 1 80 6 0 460 chain 4579 chr19 59128983 + 20839039 20839111 L1PREC2 3366 + 2978 3048 199889 28 6 4 38 chain 40527 chr19 59128983 + 20845242 20846012 LTR66 600 + 0 600 68553 106 204 6 68 3 0 38 19 17 54 13 14 169 1 33 95 chain 6861 chr19 59128983 + 20846819 20847127 L1PA10 4194 - 3770 4019 178492 17 5 4 9 1 0 10 0 3 6 13 1 10 3 2 6 1 0 21 2 0 22 53 26 14 9 7 16 1 0 5 9 8 5 2 0 9 11 7 9 2 0 8 3 0 10 2 0 14 chain 4222 chr19 59128983 + 20847714 20847765 LTR2B 499 - 449 499 204267 36 1 0 14 chain 28708 chr19 59128983 + 20848967 20849414 MER57E3 465 - 28 455 90305 19 11 15 252 1 0 11 24 19 31 18 0 80 chain 88551 chr19 59128983 + 20859863 20860930 MER11C 1089 + 0 1072 40167 225 0 5 131 1 0 202 6 5 23 0 1 80 1 0 248 17 18 59 0 1 74 chain 37266 chr19 59128983 + 20865680 20866299 LTR14B 630 - 0 620 73147 196 2 0 5 43 15 14 0 9 19 12 63 8 30 0 5 0 1 8 9 16 8 7 0 253 chain 71131 chr19 59128983 + 20875238 20876119 MER11D 897 + 0 897 47874 481 7 0 110 3 26 280 chain 12612 chr19 59128983 + 20895114 20895295 HERVK14-int 1672 - 7 184 149802 6 1 0 140 1 0 8 5 3 20 chain 39433 chr19 59128983 + 20896573 20897127 L1PA6 6164 + 5606 6162 70114 332 67 69 155 chain 7557 chr19 59128983 + 20900070 20900157 MSTB 430 - 343 430 173822 87 chain 321641 chr19 59128983 + 20901458 20905430 L1PA6 6164 - 4 3991 12534 30 9 15 416 0 1 821 3 4 224 0 1 346 0 2 64 1 4 72 1 2 118 6 3 142 2 1 370 0 1 279 1 4 49 1 2 11 2 1 86 0 1 155 0 1 609 2 0 152 chain 22348 chr19 59128983 + 20912436 20912721 AluSp 311 + 4 296 118708 181 9 10 81 0 6 14 chain 44164 chr19 59128983 + 20929625 20930124 LTR2C 499 - 0 499 63992 499 chain 346467 chr19 59128983 + 20932772 20936835 HERVE-int 4064 - 0 4064 11711 662 2 0 472 0 28 527 0 2 219 2 1 619 26 1 568 1 0 4 0 1 107 2 0 40 0 1 812 chain 42695 chr19 59128983 + 20937943 20938438 LTR2C 499 - 0 499 65778 320 0 4 175 chain 36342 chr19 59128983 + 20951219 20951681 LTR2 463 + 0 463 74442 360 34 35 68 chain 15675 chr19 59128983 + 20953423 20953617 LTR66 600 - 400 594 139350 194 chain 35639 chr19 59128983 + 20956501 20957419 HERVL66-int 1251 - 373 1123 75357 49 20 0 8 19 12 44 21 19 68 1 0 34 6 5 49 3 0 12 30 19 61 1 0 78 134 103 17 20 1 44 27 0 64 16 10 18 50 11 24 chain 32872 chr19 59128983 + 20959944 20960402 MER57E3 465 - 24 465 79417 289 2 1 17 1 0 13 28 13 108 chain 67496 chr19 59128983 + 20968874 20970118 LTR70 1284 + 345 1283 49450 252 0 1 51 0 1 213 1 2 63 28 32 73 311 0 75 0 4 45 8 5 31 1 0 43 2 1 39 1 0 7 chain 29568 chr19 59128983 + 20980001 20980311 AluYf4 310 - 0 310 86349 310 chain 533690 chr19 59128983 + 20990530 20996633 L1PA3long 6157 + 0 6157 3741 317 9 12 144 0 4 91 0 4 127 0 7 77 4 6 443 0 12 213 0 4 864 6 0 67 0 4 179 0 4 566 0 2 109 0 3 753 0 4 76 0 1 467 1 0 200 0 1 539 0 5 518 0 1 333 chain 42632 chr19 59128983 + 21001996 21002574 LTR10C 591 - 1 591 65858 55 4 9 16 25 27 227 0 3 96 1 3 154 chain 7097 chr19 59128983 + 21009511 21009593 L1PA3long 6157 + 1499 1581 175048 82 chain 139219 chr19 59128983 + 21009593 21011266 L1PA3long 6157 + 2270 3946 26261 56 1 0 170 7 8 687 1 0 76 1 3 207 16 17 388 17 18 46 chain 195336 chr19 59128983 + 21011266 21013470 L1PA3long 6157 + 3947 6149 19552 296 2 1 1660 1 0 245 chain 533388 chr19 59128983 + 21023827 21029944 L1PA4 6152 + 0 6140 3795 74 0 3 50 0 14 2348 1 0 266 0 1 759 1 2 839 0 4 1017 0 2 138 2 1 622 chain 7192 chr19 59128983 + 21034984 21035062 LTR10C 591 + 14 92 176128 78 chain 401628 chr19 59128983 + 21035073 21040444 L1PA6 6164 + 0 6162 10039 85 38 242 42 27 34 89 19 18 433 0 6 8 6 0 50 0 1 1240 30 30 53 1 2 193 0 2 176 3 0 75 0 1 405 3 0 63 1 2 145 0 12 295 0 3 505 306 0 44 5 6 109 0 13 166 10 869 558 0 1 4 1 0 163 0 1 11 2 0 7 chain 40038 chr19 59128983 + 21040444 21040945 LTR10C 591 + 80 591 69263 99 0 1 9 0 2 5 1 0 41 0 6 267 0 2 79 chain 13775 chr19 59128983 + 21042468 21042622 L1PA6 6164 + 5817 5971 145350 154 chain 15770 chr19 59128983 + 21042629 21042813 L1PA6 6164 + 5976 6160 139054 184 chain 36654 chr19 59128983 + 21047703 21048166 LTR7C 471 - 7 471 74018 25 0 2 59 0 2 81 3 0 295 chain 259425 chr19 59128983 + 21075765 21078632 L1PA3long 6157 - 0 2869 15736 148 3 4 698 0 1 2018 chain 41661 chr19 59128983 + 21119215 21119728 LTR10C 591 - 62 577 67078 11 5 8 230 0 1 247 2 0 18 chain 20881 chr19 59128983 + 21122543 21122791 AluSp 311 - 52 300 124352 248 chain 124938 chr19 59128983 + 21134856 21136265 SVA_C 1631 - 1 1615 29414 593 13 7 26 2 1 19 0 174 132 0 37 620 0 1 4 chain 8620 chr19 59128983 + 21136342 21136435 L1PA2 6032 + 5939 6032 167633 93 chain 435384 chr19 59128983 + 21171318 21177420 L1PA8 5853 + 49 5853 9185 23 3 1 9 48 26 194 18 6 99 0 1 5 2 1 368 0 11 234 6 0 999 1 0 654 11 0 198 0 1 515 0 1 630 316 0 163 0 2 203 0 299 300 0 70 32 314 0 24 0 1 400 0 3 42 2 1 43 2 0 69 15 18 45 2 1 19 3 2 91 chain 8555 chr19 59128983 + 21182087 21182204 MER85 139 + 12 139 167991 76 1 11 40 chain 37087 chr19 59128983 + 21185187 21185646 LTR2 463 + 0 463 73401 377 9 10 28 0 4 22 1 0 22 chain 238239 chr19 59128983 + 21187330 21192181 Harlequin-int 5206 + 132 3383 16867 13 13 0 149 0 1 81 1 0 107 1 0 199 316 0 164 0 1 24 5 4 559 13 0 286 0 5 812 1651 388 59 0 1 398 chain 5329 chr19 59128983 + 21190073 21190152 Harlequin-int 5206 - 4839 4917 189748 37 1 0 7 1 0 23 1 0 4 0 2 5 chain 36452 chr19 59128983 + 21192181 21192848 HERVE_a-int 7009 + 6306 6942 73513 83 7 6 38 1 0 32 1 0 12 2 1 13 1 0 5 2 0 9 1 0 35 1 0 8 18 17 31 0 2 5 13 9 27 7 5 55 2 1 9 4 0 26 4 1 53 3 1 26 1 0 31 1 0 6 15 14 24 2 0 34 4 2 15 chain 19869 chr19 59128983 + 21193398 21193644 AluSg 306 + 48 292 127592 239 2 0 5 chain 12524 chr19 59128983 + 21194500 21194834 L1PB1 5432 + 5114 5413 150140 24 1 0 9 13 11 9 3 1 52 19 17 43 1 0 14 76 52 24 1 0 18 6 5 11 1 0 9 chain 2907 chr19 59128983 + 21207644 21207676 MER92B 628 - 227 259 226933 32 chain 36652 chr19 59128983 + 21207832 21208353 MER41A 554 - 7 519 74020 128 1 0 99 2 4 12 30 19 8 1 0 64 0 1 119 0 1 57 chain 3251 chr19 59128983 + 21210705 21210749 LTR23 429 + 359 408 219983 25 0 5 19 chain 58342 chr19 59128983 + 21230985 21231682 SVA_C 1631 - 0 646 53782 17 4 0 596 1 0 10 47 1 22 chain 19246 chr19 59128983 + 21235587 21235879 LTR71B 605 - 0 299 129393 143 6 7 16 1 0 46 19 27 23 1 0 37 chain 22826 chr19 59128983 + 21265848 21266141 AluSp 311 - 17 311 116465 101 8 9 76 0 1 64 1 0 43 chain 16394 chr19 59128983 + 21273470 21273679 MER41A 554 - 22 236 137226 59 0 5 150 chain 6695 chr19 59128983 + 21295931 21296011 5S 121 - 0 80 179722 80 chain 35987 chr19 59128983 + 21296055 21296962 L1PA10 4194 - 1840 2419 74913 84 96 46 53 330 0 117 0 10 134 0 42 93 chain 41398 chr19 59128983 + 21309703 21310181 LTR15 485 - 10 485 67416 131 3 0 344 chain 41289 chr19 59128983 + 21311550 21312068 HERV1_LTRd 520 + 0 517 67543 54 1 0 8 1 0 75 1 7 215 7 2 156 chain 5418 chr19 59128983 + 21312074 21312140 MER57E3 465 + 248 314 190820 66 chain 14987 chr19 59128983 + 21312285 21312467 LTR7C 471 - 286 471 141363 77 0 1 94 0 2 11 chain 26805 chr19 59128983 + 21313522 21314230 HERVH-int 3825 - 0 360 96963 40 353 5 214 1 0 4 0 1 96 chain 37487 chr19 59128983 + 21317583 21318059 LTR7C 471 - 0 471 72829 33 0 1 216 11 5 32 1 0 5 0 1 178 chain 24772 chr19 59128983 + 21328004 21328284 AluY 311 + 8 287 106047 163 1 0 116 chain 141378 chr19 59128983 + 21336837 21338411 L1PA4 6152 - 9 1588 25925 55 0 1 87 0 4 1432 chain 61331 chr19 59128983 + 21360637 21361585 L1PA10 4194 - 93 1045 52186 15 6 4 88 19 37 5 0 2 312 0 8 85 2 1 57 4 10 25 0 4 97 0 1 54 68 13 23 8 31 80 chain 38289 chr19 59128983 + 21380331 21380813 LTR15 485 - 0 484 71722 46 4 0 158 0 4 244 7 9 23 chain 37472 chr19 59128983 + 21389492 21389975 LTR15 485 - 0 485 72853 47 5 1 16 8 10 130 5 9 272 chain 130468 chr19 59128983 + 21394761 21396269 SVA_B 1603 - 0 1602 27972 432 0 6 162 0 78 855 20 31 15 0 2 7 3 0 14 chain 6991 chr19 59128983 + 21402660 21402838 L1MA3 4352 + 4179 4351 177530 82 36 32 13 30 28 17 chain 37047 chr19 59128983 + 21410964 21411427 MER9B 498 + 28 493 73462 107 0 1 257 5 6 5 1 0 40 0 1 48 chain 71167 chr19 59128983 + 21412459 21413418 MER11C 1089 + 0 1076 47861 55 1 92 112 0 3 184 0 1 124 27 28 176 14 33 81 0 1 150 0 1 35 chain 49783 chr19 59128983 + 21419562 21420147 LTR10C 591 + 0 591 59173 47 0 4 457 0 2 81 chain 145100 chr19 59128983 + 21441696 21444579 SVA_A 1864 - 4 1846 25308 528 144 0 189 13 12 23 52 10 101 0 37 7 40 0 31 0 36 49 4 1 72 78 0 37 2 0 37 2 0 74 2 0 83 802 2 513 chain 1738 chr19 59128983 + 21442267 21442294 SVA_A 1864 - 768 795 84198 27 chain 4366 chr19 59128983 + 21442294 21442368 SVA_A 1864 - 537 643 54046 9 3 0 36 2 0 8 0 37 16 chain 2891 chr19 59128983 + 21442593 21442642 SVA_A 1864 - 941 986 54046 9 9 6 22 1 0 8 chain 2360 chr19 59128983 + 21442753 21442793 SVA_A 1864 - 1095 1134 54046 6 8 7 26 chain 2832 chr19 59128983 + 21442979 21443027 SVA_A 1864 - 1240 1285 54046 14 3 0 31 chain 6843 chr19 59128983 + 21443774 21443862 SVA_A 1864 - 532 617 178639 14 3 0 71 chain 11014 chr19 59128983 + 21443869 21444066 SVA_A 1864 - 806 920 135747 110 83 0 4 chain 36763 chr19 59128983 + 21446591 21447079 LTR15 485 + 0 485 73857 27 0 2 145 5 4 4 0 1 98 7 11 60 7 1 84 3 0 48 chain 2892 chr19 59128983 + 21447764 21447911 SVA_F 1814 + 626 762 227180 30 95 85 5 1 0 16 chain 14982 chr19 59128983 + 21452004 21452185 MER57E3 465 + 268 449 141380 181 chain 34010 chr19 59128983 + 21453635 21454067 L1PBa 3878 - 1197 1629 77601 432 chain 20939 chr19 59128983 + 21457561 21458263 L1PB2 3958 - 120 507 124153 66 1 0 19 2 0 30 0 1 5 12 13 24 1 0 27 325 12 24 1 0 22 1 0 4 35 38 9 1 0 93 chain 8387 chr19 59128983 + 21463162 21463266 L1PB 1623 - 395 499 168916 104 chain 5466 chr19 59128983 + 21468317 21468514 L1PA17 2846 - 1570 1780 190349 65 114 127 18 chain 24769 chr19 59128983 + 21483030 21483327 AluSp 311 + 1 301 106064 90 0 3 207 chain 5536 chr19 59128983 + 21486861 21486934 MSTB 430 - 32 105 189703 73 chain 21387 chr19 59128983 + 21490156 21490438 AluSg 306 + 11 293 122557 102 0 2 159 8 6 13 chain 23176 chr19 59128983 + 21498923 21499206 AluSp 311 - 0 290 114781 106 0 9 64 2 0 111 chain 50117 chr19 59128983 + 21500096 21500714 LTR70 1284 - 651 1274 58932 274 1 4 57 0 2 286 chain 114126 chr19 59128983 + 21507848 21509443 L1PB1 5432 + 3793 5370 33063 161 0 3 27 0 1 632 3 4 406 19 20 5 1 0 51 1 2 9 3 0 24 0 2 7 17 12 10 5 3 48 15 17 44 1 0 15 3 0 7 14 5 19 8 5 12 2 0 26 chain 11978 chr19 59128983 + 21511444 21511598 MER57E3 465 + 272 425 152296 52 1 0 101 chain 3802 chr19 59128983 + 21518276 21518316 LTR10E 629 - 140 180 210371 40 chain 41072 chr19 59128983 + 21518608 21519215 LTR10E 629 - 0 629 67807 6 1 0 37 27 25 54 1 3 127 6 7 73 8 34 89 17 14 144 1 0 16 chain 44707 chr19 59128983 + 21521183 21521691 MER9a1 513 - 5 513 63371 508 chain 377619 chr19 59128983 + 21521691 21526262 HERVK9-int 4720 - 0 4684 10829 174 0 28 80 0 96 1623 4 0 215 0 1 33 0 1 4 1 0 480 1 0 4 21 22 378 1 0 327 1 0 229 0 1 34 1 0 8 0 1 818 6 5 26 1 0 8 1 0 66 1 0 4 7 4 14 chain 42747 chr19 59128983 + 21527585 21528092 MER9a1 513 - 0 513 65724 112 0 5 25 0 1 370 chain 24955 chr19 59128983 + 21547860 21548212 MER41A 554 - 184 542 105033 40 11 15 127 9 10 85 0 1 80 chain 5744 chr19 59128983 + 21553440 21553515 LTR23 429 + 354 429 187695 75 chain 51484 chr19 59128983 + 21572443 21573131 LTR12 884 + 0 861 57981 25 1 0 33 1 42 219 0 25 30 4 2 67 2 1 104 0 103 101 2 10 99 chain 2507 chr19 59128983 + 21579478 21579523 MER33 330 + 250 294 233040 9 2 0 23 1 0 4 0 2 6 chain 40434 chr19 59128983 + 21594824 21595328 MER9a2 513 - 0 513 68685 68 2 0 30 10 17 74 4 8 316 chain 386668 chr19 59128983 + 21595331 21600005 HERVK9-int 4720 - 5 4684 10560 93 0 11 159 0 7 184 0 1 760 0 3 406 4 0 372 4 0 249 0 1 4 2 1 899 0 1 92 8 2 486 2 1 45 0 2 515 1 0 51 16 15 84 0 2 106 7 6 25 2 1 7 1 0 12 0 2 52 13 9 13 chain 40019 chr19 59128983 + 21601333 21601820 MER9a2 513 - 0 513 69295 104 0 2 178 6 30 199 chain 29173 chr19 59128983 + 21602132 21602558 MLT2A1 477 - 0 477 88186 6 0 4 47 3 35 155 0 8 43 12 8 95 8 10 33 0 5 7 0 4 17 chain 14087 chr19 59128983 + 21610096 21610249 L1PA2 6032 - 6 159 144271 153 chain 123967 chr19 59128983 + 21625783 21627216 SVA_B 1603 - 0 1540 29710 312 8 1 124 1 2 150 0 39 13 5 1 42 0 82 138 4 0 636 chain 160091 chr19 59128983 + 21628949 21631161 L1PA7 6471 - 4 2090 23326 43 24 23 61 0 3 393 0 4 81 0 3 42 0 1 98 0 3 62 0 1 22 4 0 6 1 4 11 1 2 79 0 1 20 0 2 397 143 0 213 1 0 62 1 2 5 1 0 10 0 5 5 3 0 64 2 0 105 1 0 25 0 2 226 chain 3290 chr19 59128983 + 21630396 21630437 L1PA7 6471 - 1323 1365 219170 12 0 1 29 chain 73605 chr19 59128983 + 21638253 21639312 MER4-int 2692 - 1283 2363 46729 158 1 0 50 1 4 84 6 18 109 0 1 107 0 4 48 31 0 29 1 14 46 1 6 11 10 5 48 8 9 93 0 19 217 chain 25255 chr19 59128983 + 21656700 21656991 AluSp 311 - 15 311 103449 164 0 2 36 0 3 91 chain 119543 chr19 59128983 + 21669128 21670491 SVA_D 2077 - 0 1977 31204 623 0 538 155 3 0 21 10 89 551 chain 15519 chr19 59128983 + 21674279 21674479 AluSp 311 + 57 294 139832 71 4 0 71 0 40 37 5 6 12 chain 37223 chr19 59128983 + 21680219 21680707 MER9a3 513 - 2 513 73203 66 2 0 9 2 3 122 0 4 32 0 17 77 1 2 159 0 2 18 chain 47243 chr19 59128983 + 21683099 21684006 PABL_A 660 - 0 660 61006 86 0 1 149 4 0 215 0 42 76 308 7 49 7 22 13 chain 135168 chr19 59128983 + 21693384 21694910 SVA_D 2077 - 3 2059 26980 6 2 0 579 1 0 4 0 1 34 0 1 4 0 1 34 4 492 26 0 40 793 0 2 39 chain 20071 chr19 59128983 + 21694911 21695188 MER41A 554 - 183 465 126918 243 16 21 18 chain 50657 chr19 59128983 + 21705718 21706575 LTR70 1284 + 492 1271 58532 34 0 6 36 32 37 186 3 0 68 0 1 6 1 0 30 3 0 5 78 0 227 1 0 4 0 1 18 2 0 6 1 0 36 2 1 32 11 10 35 chain 3114 chr19 59128983 + 21709298 21709337 MADE1 96 - 57 96 222666 39 chain 11149 chr19 59128983 + 21709581 21709749 L1PBa1 4058 - 3889 4048 155637 109 30 21 29 chain 25234 chr19 59128983 + 21712717 21713010 AluYk4 311 + 0 299 103570 72 0 6 221 chain 24675 chr19 59128983 + 21720795 21721108 AluY 311 + 10 311 106578 116 13 0 83 0 1 101 chain 383721 chr19 59128983 + 21729698 21737155 L1PA8 5853 - 6 5031 10649 87 1 0 19 2 1 52 1 0 9 5 4 65 2 0 46 1 0 93 0 1 74 0 2 96 11 12 59 0 6 91 0 1 71 0 3 46 0 2 199 0 1 431 7 6 36 1 0 51 0 1 247 225 0 230 303 3 99 0 1 145 1 2 432 4 0 28 2 1 97 0 1 37 0 3 42 0 1 169 1 0 4 1 2 36 1 2 78 1507 0 338 4 5 261 4 1 15 4 0 77 0 7 364 464 13 256 0 3 13 3 36 120 23 25 266 chain 128577 chr19 59128983 + 21733459 21734942 SVA_D 2077 - 0 1919 28427 627 0 1 4 0 1 44 6 7 4 0 1 36 4 6 38 1 392 266 0 40 401 1 0 51 chain 13116 chr19 59128983 + 21750353 21750538 MER57E3 465 + 268 449 147782 34 9 4 130 0 1 12 chain 75384 chr19 59128983 + 21750743 21751713 LTR5_Hs 974 + 0 974 45828 50 5 4 115 1 0 120 0 1 177 0 1 188 1 0 168 3 10 31 8 6 103 chain 41320 chr19 59128983 + 21753065 21753576 LTR10D 510 - 0 510 67509 246 0 2 161 0 1 27 9 5 68 chain 42800 chr19 59128983 + 21771372 21771882 MER9a1 513 + 0 513 65659 39 1 0 4 0 1 410 0 2 34 0 1 22 chain 16243 chr19 59128983 + 21771882 21772075 AluSc 308 + 96 288 137639 35 1 0 157 chain 38857 chr19 59128983 + 21785660 21786127 LTR15 485 + 1 484 70935 147 1 4 12 0 11 83 0 1 147 0 1 49 0 1 23 1 0 4 chain 84629 chr19 59128983 + 21789316 21790274 SVA_D 2077 - 0 1484 41673 18 4 0 609 0 1 4 0 1 38 0 488 179 0 40 106 chain 37452 chr19 59128983 + 21794987 21795451 LTR15 485 + 0 485 72887 57 0 18 73 1 4 300 10 11 17 1 0 5 chain 106412 chr19 59128983 + 21797121 21798338 SVA_B 1603 + 49 1603 35150 616 5 86 44 0 241 115 1 0 400 0 16 36 chain 28096 chr19 59128983 + 21798635 21798932 AluYa5 310 - 13 310 92664 297 chain 86509 chr19 59128983 + 21803025 21804042 LTR5A 1029 - 0 1029 40965 50 0 7 20 1 7 798 1 0 147 chain 32204 chr19 59128983 + 21804462 21804903 LTR22A 463 + 23 463 80517 313 38 37 90 chain 95275 chr19 59128983 + 21807049 21808273 HERVK22-int 3844 + 6 1240 38014 34 3 0 512 27 34 157 0 5 330 0 1 161 chain 6307 chr19 59128983 + 21810155 21810235 LTR3B_ 500 + 0 80 182737 11 0 1 4 1 0 64 chain 32413 chr19 59128983 + 21810235 21810642 LTR3 431 + 0 410 80184 402 0 3 5 chain 40221 chr19 59128983 + 21812186 21812675 LTR17 781 + 286 774 69003 41 1 0 447 chain 194393 chr19 59128983 + 21814379 21816734 HERV17-int 4347 + 13 2373 19638 14 1 0 50 2 1 34 2 0 27 1 0 204 0 1 144 0 1 4 1 0 60 17 0 15 0 11 798 0 1 63 0 1 21 8 6 127 0 2 517 0 1 169 0 12 76 chain 28426 chr19 59128983 + 21817258 21817584 LTR17 781 + 0 326 91482 326 chain 26050 chr19 59128983 + 21829058 21829415 L1PA10 4194 - 1063 1415 99826 7 6 0 14 1 2 56 9 10 86 1 0 177 chain 47431 chr19 59128983 + 21844066 21844582 L1PA2 6032 - 3 520 60878 331 0 1 185 chain 43595 chr19 59128983 + 21849369 21849880 MER9a1 513 - 0 513 64690 61 1 3 449 chain 367678 chr19 59128983 + 21849917 21854339 HERVK9-int 4720 - 38 4644 11161 244 0 96 297 4 5 135 0 48 1350 0 38 611 0 1 1459 6 9 226 2 1 30 1 0 8 1 0 48 chain 42420 chr19 59128983 + 21855693 21856204 MER9a1 513 - 0 513 66118 66 0 2 445 chain 141585 chr19 59128983 + 21864185 21865745 L1PA3long 6157 + 4592 6157 25886 714 0 1 797 0 4 49 chain 20391 chr19 59128983 + 21889445 21889658 AluYa5 310 - 0 213 125926 213 chain 118179 chr19 59128983 + 21890167 21891496 SVA_C 1631 + 43 1618 31737 12 0 4 544 0 156 105 1 0 46 3 0 17 0 91 19 1 0 581 chain 173243 chr19 59128983 + 21903193 21905526 SVA_E 1901 + 15 1901 21684 138 1 0 664 250 0 23 48 0 83 151 0 35 2 1 560 0 5 363 1 0 14 chain 5947 chr19 59128983 + 21904043 21904125 SVA_E 1901 + 862 989 80404 61 0 46 5 1 0 15 chain 7040 chr19 59128983 + 21904125 21904246 SVA_E 1901 + 817 940 73762 10 23 29 71 4 0 13 chain 2735 chr19 59128983 + 21904269 21904316 SVA_E 1901 + 963 1010 73762 47 chain 8728 chr19 59128983 + 21904401 21904551 SVA_E 1901 + 1095 1147 73762 40 98 0 12 chain 3409 chr19 59128983 + 21904441 21904488 SVA_E 1901 + 1262 1310 80404 43 0 1 4 chain 4142 chr19 59128983 + 21904488 21904533 SVA_E 1901 + 1007 1052 168475 45 chain 12864 chr19 59128983 + 21912229 21912372 L1PA5 6144 + 5992 6135 148781 143 chain 21992 chr19 59128983 + 21918039 21918323 AluY 311 + 25 303 120262 107 0 1 114 7 0 56 chain 17253 chr19 59128983 + 21918323 21918576 L1PA10 4194 + 1624 1925 134917 32 6 8 64 4 8 133 0 42 14 chain 28900 chr19 59128983 + 21928319 21928623 AluYb8 318 - 14 318 89456 304 chain 4918 chr19 59128983 + 21932844 21932908 LTR23 429 - 7 72 196074 10 0 1 54 chain 97234 chr19 59128983 + 21937195 21938840 L1PA8A 6298 + 4083 6289 37506 14 0 5 41 0 844 78 0 4 91 3 2 15 16 0 27 2 9 57 0 1 49 1 0 23 0 5 23 1 0 116 1 6 25 0 2 50 0 2 5 306 3 53 0 1 44 0 3 110 0 1 362 12 13 80 1 3 39 chain 22079 chr19 59128983 + 21937846 21938138 AluSp 311 + 14 311 119889 93 0 1 30 15 19 154 chain 133533 chr19 59128983 + 21957961 21959466 SVA_D 2077 + 6 2077 27312 21 6 0 583 13 11 140 0 40 77 0 535 32 1 0 632 chain 4440 chr19 59128983 + 21974359 21974811 HERVK3-int 3053 - 896 1313 201457 46 378 343 28 chain 24137 chr19 59128983 + 21980583 21980862 AluSc5 308 + 10 289 109540 279 chain 43192 chr19 59128983 + 22007582 22008572 LTR70 1284 - 2 671 65182 6 1 0 40 1 0 34 7 10 41 3 1 26 328 0 210 0 2 8 1 5 37 2 0 48 22 19 31 1 0 14 1 7 43 0 2 85 chain 4398 chr19 59128983 + 22021654 22021704 MER41B 635 + 87 138 201963 41 0 1 9 chain 24799 chr19 59128983 + 22035724 22036014 AluSc5 308 + 5 293 105899 121 2 0 167 chain 3815 chr19 59128983 + 22046706 22047074 LTR15 485 - 6 375 80271 46 17 13 70 0 1 63 3 7 169 chain 160235 chr19 59128983 + 22047544 22049645 SVA_F 1814 - 1 1801 23306 615 101 0 236 126 14 67 0 1 5 129 0 71 0 40 751 chain 7174 chr19 59128983 + 22048159 22048260 SVA_F 1814 - 792 905 127754 11 1 0 10 2 0 38 0 15 39 chain 9818 chr19 59128983 + 22048496 22048622 SVA_F 1814 - 549 626 111223 76 49 0 1 chain 2043 chr19 59128983 + 22048572 22048619 SVA_F 1814 - 801 848 128727 47 chain 7714 chr19 59128983 + 22048694 22048793 SVA_F 1814 - 698 797 111223 99 chain 1140 chr19 59128983 + 22049717 22049827 LTR15 485 - 375 485 80271 110 chain 87544 chr19 59128983 + 22063053 22064074 LTR13 1007 - 0 1007 40555 577 15 1 429 chain 86629 chr19 59128983 + 22072323 22073344 LTR13 1007 - 0 1007 40912 473 0 4 104 18 0 426 chain 492448 chr19 59128983 + 22076488 22082892 L1PA6 6164 - 3 6164 7248 7 3 0 96 4 0 33 0 1 4 2 0 21 0 6 489 311 0 100 1 0 116 0 3 129 0 21 576 0 3 187 0 4 449 5 12 200 2 1 180 1 0 205 0 1 50 0 3 74 5 7 6 0 1 10 3 2 26 6 0 274 1 0 12 0 4 105 8 9 12 0 1 128 11 21 31 0 3 209 1 0 119 0 2 254 1 0 486 5 7 205 3 0 5 7 8 493 7 8 99 6 5 4 0 1 205 18 18 81 9 11 5 2 0 171 0 16 126 chain 26966 chr19 59128983 + 22101388 22101797 LTR7B 505 + 0 490 96381 108 1 11 52 25 37 18 6 26 5 0 1 53 0 41 89 14 13 26 2 0 10 chain 255264 chr19 59128983 + 22136558 22139764 L1P2 5180 - 1946 5178 15969 21 1 0 4 0 1 354 4 5 735 0 3 306 0 2 7 1 3 838 1 26 135 2 1 6 1 0 156 5 4 112 1 0 8 1 0 162 0 21 9 6 0 3 15 0 65 1 0 98 1 0 147 chain 26183 chr19 59128983 + 22140639 22140947 L1PA3long 6157 - 0 310 99270 244 1 3 63 chain 86117 chr19 59128983 + 22143900 22145028 MER11A 1151 - 0 1151 41113 60 5 4 198 0 1 29 14 20 160 1 0 290 0 1 60 0 2 21 0 11 85 1 3 88 18 20 98 chain 493566 chr19 59128983 + 22160086 22166794 L1PA7 6471 + 5 6452 7196 398 2 0 7 4 2 207 0 1 101 2 11 330 15 17 171 46 47 171 16 8 5 0 1 119 0 3 8 0 1 421 0 1 102 1 0 187 10 8 184 0 4 116 1 2 341 4 6 38 6 12 42 3 2 4 0 1 232 0 3 165 0 2 11 1 0 52 0 4 281 3 4 21 7 9 389 1 2 407 0 12 140 0 1 11 315 0 125 5 3 517 0 1 147 0 6 43 0 2 149 0 3 427 0 1 61 0 1 136 chain 33550 chr19 59128983 + 22171104 22171518 LTR3 431 + 0 416 78313 62 0 1 187 0 1 165 chain 193971 chr19 59128983 + 22171891 22174108 L1PA3long 6157 - 0 2201 19677 285 0 5 1070 9 0 227 16 3 191 0 1 419 chain 23985 chr19 59128983 + 22192566 22193207 MER57E3 465 + 129 449 110417 44 0 1 83 322 0 192 chain 61090 chr19 59128983 + 22199126 22199845 L1PA7 6471 + 4893 5612 52295 719 chain 29824 chr19 59128983 + 22199849 22200218 L1PA7 6471 + 5615 5985 85363 169 2 3 198 chain 36765 chr19 59128983 + 22200218 22200671 L1PA7 6471 + 6001 6454 73852 453 chain 319991 chr19 59128983 + 22203318 22207975 HERVL-int 5654 - 1506 5654 12598 54 0 1 145 0 1 255 2 0 179 0 9 261 344 0 326 0 1 4 2 1 201 36 37 29 5 17 244 0 6 5 0 4 8 1 2 281 12 14 562 0 14 741 0 3 121 0 1 4 1 0 311 0 5 36 223 0 146 0 1 118 chain 4450 chr19 59128983 + 22207975 22208025 MLT2A1 477 - 0 50 201348 50 chain 22762 chr19 59128983 + 22233891 22234188 AluSp 311 + 6 311 116768 126 1 0 81 16 25 73 chain 5438 chr19 59128983 + 22235816 22235892 MER57E3 465 - 6 80 190636 10 2 0 64 chain 116769 chr19 59128983 + 22287493 22288849 SVA_C 1631 + 278 1623 32200 441 0 40 93 4 0 119 45 0 47 1 0 357 0 1 235 2 0 12 chain 2761 chr19 59128983 + 22288150 22288187 SVA_C 1631 + 925 963 169907 10 7 8 20 chain 162803 chr19 59128983 + 22288927 22291500 SVA_F 1814 - 0 1804 22962 68 0 21 538 358 0 10 1 0 215 0 16 45 451 0 665 0 3 93 0 1 129 chain 14035 chr19 59128983 + 22289534 22289812 SVA_F 1814 - 627 852 74838 10 1 0 151 52 0 64 chain 2282 chr19 59128983 + 22289712 22289748 SVA_F 1814 - 867 901 158704 11 2 0 23 chain 3331 chr19 59128983 + 22289821 22289891 SVA_F 1814 - 734 804 143634 70 chain 4342 chr19 59128983 + 22290162 22290248 SVA_F 1814 - 1352 1439 74838 25 3 5 44 1 0 13 chain 8649 chr19 59128983 + 22290248 22290339 SVA_F 1814 - 632 723 134529 91 chain 1575 chr19 59128983 + 22290339 22290412 SVA_F 1814 - 914 987 137141 2 1 0 10 0 2 31 1 0 28 chain 9093 chr19 59128983 + 22290412 22290514 SVA_F 1814 - 747 848 155295 62 1 0 39 chain 38716 chr19 59128983 + 22295778 22296253 LTR15 485 - 0 477 71126 5 1 0 23 0 1 304 3 5 57 0 1 17 1 0 64 chain 23340 chr19 59128983 + 22311770 22312058 AluSp 311 - 16 303 113982 163 1 0 124 chain 496465 chr19 59128983 + 22331175 22337308 L1PA6 6164 + 0 6162 7042 194 1 2 4 1 0 185 46 47 137 1 0 1073 1 0 85 0 1 246 0 1 67 1 0 39 0 2 95 1 2 145 0 1 117 0 1 745 0 1 83 0 2 246 0 1 174 0 3 268 0 1 178 0 5 168 4 0 7 1 2 321 1 0 702 0 1 134 0 2 17 0 2 591 0 10 54 chain 502893 chr19 59128983 + 22338325 22344455 L1PA5 6144 - 16 6144 6675 97 1 0 355 15 0 256 3 4 603 0 1 190 3 0 323 4 0 152 0 6 218 1 0 85 0 1 1523 1 0 217 0 3 241 0 1 604 5 6 61 18 9 15 0 3 540 17 18 385 62 76 135 chain 6112 chr19 59128983 + 22345962 22346037 LTR25 836 + 9 84 184327 75 chain 401537 chr19 59128983 + 22367684 22373087 L1PA8 5853 + 197 5608 10042 104 8 12 137 10 11 82 0 1 25 24 24 219 10 4 37 17 9 5 0 1 322 0 2 327 3 4 195 2 0 605 4 15 20 6 8 327 11 11 87 6 10 64 0 2 21 1 0 18 13 9 304 15 16 12 4 6 22 0 5 152 0 1 4 1 0 205 7 8 103 0 1 300 0 8 308 13 11 329 0 6 7 24 4 279 1 0 3 2 0 194 4 5 313 0 1 42 1 0 44 chain 33093 chr19 59128983 + 22378921 22379335 LTR3 431 + 0 416 79062 250 0 1 88 5 6 71 chain 10421 chr19 59128983 + 22397420 22397554 MER57E3 465 + 129 264 158594 44 0 1 90 chain 279214 chr19 59128983 + 22409880 22413308 L1PA7 6471 + 3024 6468 14684 120 0 1 339 1 2 4 1 0 192 8 9 45 6 8 212 1 4 24 1 2 275 1 0 75 0 1 508 0 1 88 10 14 248 1 0 424 1 4 160 0 1 683 chain 319550 chr19 59128983 + 22416565 22421387 HERVL-int 5654 - 1532 5628 12613 174 0 1 256 2 0 448 530 0 326 0 1 4 2 1 205 6 7 316 0 6 481 2 3 554 9 10 150 2 1 432 0 3 88 0 1 5 0 1 26 0 1 4 1 0 172 0 8 131 0 5 41 224 0 5 0 3 226 chain 49146 chr19 59128983 + 22430665 22431232 L1PA5 6144 - 115 683 59634 217 2 1 241 0 2 107 chain 4790 chr19 59128983 + 22431232 22431284 L1PA5 6144 + 6078 6130 197460 52 chain 35961 chr19 59128983 + 22451198 22451627 LTR2 463 - 16 449 74942 315 0 3 56 0 1 58 chain 211592 chr19 59128983 + 22451627 22454208 Harlequin-int 5206 - 2514 5081 18389 567 1 0 332 1 0 4 0 1 445 2 0 375 20 0 3 0 3 9 1 0 12 6 10 30 0 1 55 0 1 166 1 0 195 2 0 120 0 5 63 2 1 169 chain 36845 chr19 59128983 + 22455956 22456415 LTR2 463 - 0 463 73741 129 0 1 201 0 3 129 chain 27660 chr19 59128983 + 22457543 22457930 L1PA10 4194 + 2640 3020 94183 10 1 0 73 0 4 185 2 4 42 12 0 62 chain 71940 chr19 59128983 + 22466363 22467305 LTR5_Hs 974 + 0 974 47503 109 11 19 41 1 0 57 0 19 40 0 1 181 0 1 188 1 0 163 8 15 17 22 20 103 chain 255036 chr19 59128983 + 22490694 22494809 L1PB1 5432 - 23 3773 15980 5 1 0 13 1 0 12 8 0 9 12 11 13 2 0 14 1 0 4 3 1 19 14 5 7 3 0 15 1 0 44 1 0 16 2 1 53 2 0 5 8 4 12 1 0 8 1 0 24 1 0 9 4 2 20 15 8 23 1 0 5 14 15 16 0 2 100 0 1 98 4 3 8 3 0 99 0 2 55 4 5 131 0 4 10 75 36 192 3 6 36 312 7 134 6 8 93 3 1 248 0 1 4 4 0 11 4 3 97 0 1 5 1 0 35 11 13 78 8 16 104 0 3 254 0 3 42 0 3 61 14 13 96 0 3 28 8 9 12 1 0 7 14 15 122 1 3 5 2 0 102 0 4 82 1 2 5 9 0 104 12 16 122 1 0 207 0 1 177 1 2 207 chain 31723 chr19 59128983 + 22500219 22500587 L1PA6 6164 - 2 370 81291 368 chain 113140 chr19 59128983 + 22503877 22505247 SVA_B 1603 - 4 1597 33337 512 0 241 103 11 8 22 5 8 509 5 4 151 7 0 11 18 8 16 chain 5094 chr19 59128983 + 22507554 22508000 MER50-int 1626 - 286 801 194146 30 271 324 42 76 92 27 chain 34559 chr19 59128983 + 22537994 22538458 LTR2 463 - 0 463 76813 24 1 0 28 1 0 29 0 1 265 12 16 7 4 0 93 chain 157089 chr19 59128983 + 22541146 22543085 Harlequin-int 5206 - 3100 5079 23710 50 4 6 114 2 0 295 1 2 349 2 0 109 2 0 5 0 2 153 0 39 300 1 0 199 1 0 108 1 0 50 0 3 22 1 0 11 6 10 131 7 6 15 chain 33647 chr19 59128983 + 22544945 22545390 LTR2 463 - 24 463 78175 28 1 0 10 12 7 11 2 3 153 0 2 170 3 0 55 chain 22920 chr19 59128983 + 22556146 22556431 AluSp 311 - 6 288 116012 23 0 2 195 1 0 29 4 0 33 chain 51562 chr19 59128983 + 22559924 22560573 L1PA5 6144 - 12 672 57915 23 1 10 93 1 8 8 7 0 35 1 3 480 chain 490778 chr19 59128983 + 22560589 22567876 L1PA5 6144 - 12 6144 7327 33 3 6 231 0 3 331 652 0 232 0 2 18 1 5 436 0 1 483 0 4 38 10 15 57 1 14 231 0 3 301 3 7 17 0 2 393 0 10 10 0 4 75 2 1 87 304 2 551 0 3 217 3 0 184 0 8 279 313 5 363 1 2 54 1 6 36 0 2 41 6 2 147 17 11 154 1 0 128 0 27 318 1 0 63 7 11 71 0 2 261 1 15 48 1 0 71 chain 4534 chr19 59128983 + 22561191 22561241 L1PA5 6144 - 621 671 200414 50 chain 42961 chr19 59128983 + 22561270 22561780 L1PA5 6144 - 30 541 65460 110 7 0 13 0 7 128 0 1 252 chain 8762 chr19 59128983 + 22576272 22576371 L1PA6 6164 + 4790 4889 166857 99 chain 98628 chr19 59128983 + 22576372 22577511 L1PA6 6164 + 4889 6028 37120 1139 chain 6095 chr19 59128983 + 22577518 22577594 L1PA6 6164 + 6078 6154 184459 76 chain 117181 chr19 59128983 + 22590901 22592431 L1PA8A 6298 + 3982 5518 32066 208 4 5 38 0 1 4 1 0 13 0 2 304 11 16 19 0 2 26 0 1 4 1 0 201 4 1 662 2 1 28 chain 25721 chr19 59128983 + 22595576 22595883 AluY 311 + 4 311 101213 307 chain 28487 chr19 59128983 + 22619107 22619480 L1PA8A 6298 - 7 382 91238 89 11 12 9 1 0 256 0 2 7 chain 20933 chr19 59128983 + 22629036 22629325 AluSg7 307 - 11 296 124170 78 26 22 22 0 1 43 1 0 119 chain 61164 chr19 59128983 + 22631774 22632566 LTR70 1284 + 9 930 52268 400 0 5 56 3 110 214 1 30 35 0 1 11 14 1 58 chain 24276 chr19 59128983 + 22666534 22666822 AluSp 311 - 23 311 108801 288 chain 117982 chr19 59128983 + 22680975 22682355 LTR12C 1709 - 0 1709 31811 20 1 0 125 0 8 83 0 1 244 0 4 106 2 0 3 0 318 137 0 1 659 chain 28959 chr19 59128983 + 22705338 22705726 LTR2 463 + 0 463 89178 161 5 78 104 0 1 16 18 19 84 chain 34196 chr19 59128983 + 22707608 22708165 LTR61 567 + 0 558 77356 22 25 19 14 17 11 20 3 1 52 12 17 34 2 1 18 0 5 8 10 14 125 0 5 147 3 0 45 chain 29459 chr19 59128983 + 22725156 22725465 AluYa5 310 - 1 310 86799 309 chain 57605 chr19 59128983 + 22733716 22734416 L1PA7 6471 + 5774 6465 54181 583 17 8 100 chain 15156 chr19 59128983 + 22738169 22738394 L1PA8 5853 + 5632 5853 140892 45 5 4 12 1 0 46 6 5 16 1 0 93 chain 497474 chr19 59128983 + 22743154 22749409 L1PA7 6471 - 2 6466 6982 8 5 0 16 0 1 582 7 5 1449 0 1 658 0 1 136 1 0 30 0 1 17 41 46 21 2 1 238 28 26 91 0 1 507 0 1 873 1 0 474 8 7 157 1 2 64 6 6 146 14 14 29 5 25 40 0 6 7 4 3 16 0 15 138 0 1 99 11 181 115 14 13 196 chain 23045 chr19 59128983 + 22749772 22750059 AluYf5 307 - 10 296 115423 6 3 0 172 0 1 86 1 2 19 chain 8183 chr19 59128983 + 22750983 22751071 LTR5_Hs 974 + 0 88 170050 88 chain 43928 chr19 59128983 + 22751071 22751553 LTR7 482 + 0 482 64297 482 chain 282292 chr19 59128983 + 22751555 22755081 HERVH-int 3825 + 0 3825 14519 484 0 56 30 1 0 10 1 0 19 1 0 5 28 0 15 0 37 42 2 1 56 1 2 6 0 2 13 0 3 52 0 3 244 1 0 143 15 0 63 0 1 4 1 0 385 13 40 585 0 1 487 13 48 10 35 0 195 14 18 60 8 218 11 3 0 8 4 10 458 chain 43329 chr19 59128983 + 22757339 22757813 LTR7 482 + 0 473 64999 233 1 0 240 chain 70186 chr19 59128983 + 22757823 22758699 LTR5_Hs 974 + 82 974 48313 74 0 2 130 0 1 530 8 15 37 2 0 22 1 9 72 chain 305848 chr19 59128983 + 22758699 22762735 HERVK-int 6823 + 0 6520 13175 5 1 0 13 1 0 4 1 0 20 1 0 19 1 0 39 1 0 44 12 0 73 3 0 238 1 0 205 2 0 28 1 0 19 1 0 271 0 6 34 1 0 441 1 0 178 1 2 34 0 1 110 0 1 42 20 14 165 1 0 669 0 2255 575 0 288 54 2 1 36 1 0 124 1 0 49 3 0 5 1 0 6 1 0 7 1 0 71 3 1 7 1 0 24 17 11 11 1 0 20 130 142 10 3 1 12 2 0 29 8 3 7 1 0 3 1 0 10 31 21 7 1 0 7 3 2 4 1 0 26 1 0 4 1 0 12 chain 84074 chr19 59128983 + 22763593 22764561 LTR5_Hs 974 + 0 974 41872 288 0 1 535 0 7 40 2 0 103 chain 29193 chr19 59128983 + 22768154 22768470 AluYb8 318 - 8 318 88082 178 6 0 132 chain 19777 chr19 59128983 + 22769815 22770154 THE1D 372 + 0 328 127886 52 8 0 22 4 5 84 51 48 13 1 0 104 chain 34234 chr19 59128983 + 22804598 22805019 LTR15 485 - 64 485 77302 24 3 1 109 0 4 132 0 2 26 4 0 123 chain 25243 chr19 59128983 + 22814723 22815037 AluSp 311 - 1 311 103513 6 3 0 117 1 0 187 chain 7709 chr19 59128983 + 22821403 22821638 L1PREC2 3366 - 524 749 172878 33 20 19 38 2 0 33 0 2 6 86 77 17 chain 190284 chr19 59128983 + 22827082 22830522 L1PA8A 6298 - 8 3079 20016 617 0 1 102 0 2 26 0 3 17 0 2 8 302 0 20 1 3 122 1 0 4 0 1 790 8 13 590 675 552 26 0 1 24 3 1 14 0 2 55 6 0 19 0 46 10 chain 15210 chr19 59128983 + 22835023 22835183 AluYb8 318 - 13 173 140748 160 chain 113168 chr19 59128983 + 22844793 22846113 L1PA6 6164 - 10 1374 33326 70 3 48 1147 1 0 99 chain 493728 chr19 59128983 + 22854505 22861134 L1PA5 6144 + 0 6138 7188 71 1 0 49 0 14 334 7 11 63 1 0 269 0 17 32 0 27 128 1 0 140 0 3 11 10 1 111 0 1 126 1 6 54 1 2 198 0 4 157 316 9 279 0 8 184 1 0 217 0 3 23 7 11 343 0 1 173 327 0 84 1 0 5 2 1 75 0 4 10 0 10 398 0 4 19 0 1 202 0 1 93 0 3 233 1 14 57 1 6 47 0 4 918 3 7 310 1 17 253 0 1 131 0 7 6 7 0 137 chain 8683 chr19 59128983 + 22861139 22861249 L1PA5 6144 + 5473 5584 167285 50 3 4 57 chain 45204 chr19 59128983 + 22861250 22861798 L1PA5 6144 + 5584 6132 62819 548 chain 12697 chr19 59128983 + 22861817 22861962 L1PA5 6144 + 5469 5614 149455 145 chain 36862 chr19 59128983 + 22861962 22862402 L1PA5 6144 + 5630 6070 73711 440 chain 128313 chr19 59128983 + 22882602 22884132 SVA_C 1631 - 9 1590 28490 8 4 0 571 0 1 24 1 0 14 0 1 2 0 46 105 0 40 739 25 0 11 12 5 14 chain 99420 chr19 59128983 + 22885358 22886676 SVA_B 1603 - 318 1603 36920 295 1 0 14 46 0 9 4 0 39 0 1 35 0 40 49 80 0 282 0 39 356 1 0 56 14 1 22 0 32 15 chain 3236 chr19 59128983 + 22885669 22885714 SVA_B 1603 - 670 711 181468 13 4 0 28 chain 62984 chr19 59128983 + 22916791 22917742 MER11C 1089 + 0 1059 51452 49 23 114 84 7 16 54 6 10 59 1 0 138 0 2 8 66 65 91 1 5 4 1 0 38 0 1 182 1 0 117 0 1 21 chain 40289 chr19 59128983 + 22928206 22928697 LTR17 781 + 259 772 68894 68 1 0 170 0 1 197 4 26 51 chain 317505 chr19 59128983 + 22930378 22934236 HERV17-int 4347 + 41 4347 12700 37 1 0 35 2 0 19 8 7 30 0 2 99 2 1 64 17 447 680 6 5 10 4 7 46 5 6 4 1 0 307 0 6 258 0 4 149 0 3 163 5 0 478 1 0 86 0 4 518 4 5 357 0 3 220 1 3 21 0 2 220 chain 28592 chr19 59128983 + 22934550 22934876 LTR17 781 + 0 326 90778 326 chain 257022 chr19 59128983 + 22944136 22948262 L1PB1 5432 + 1658 5409 15879 205 4 5 177 0 1 50 0 1 280 13 14 59 15 14 31 1 20 11 0 10 13 34 0 37 0 4 100 2 0 5 1 3 143 21 21 241 6 9 455 11 13 114 0 1 25 4 1 12 0 6 98 8 10 319 0 1 54 333 7 139 0 5 90 43 4 44 1 5 128 4 5 155 17 13 98 0 1 99 4 6 11 15 16 5 1 0 51 3 2 9 1 0 24 1 0 8 1 0 12 30 24 38 2 1 16 1 0 44 1 0 15 1 0 4 62 46 24 1 0 21 1 0 13 1 0 5 chain 20034 chr19 59128983 + 22954866 22955192 LTR70 1284 - 3 328 127031 6 1 0 39 1 0 51 5 3 22 3 0 91 24 25 25 0 5 58 chain 18145 chr19 59128983 + 22957769 22958223 L1PREC2 3366 + 2626 3044 132477 24 6 7 95 2 0 54 1 0 36 168 136 28 8 6 32 chain 20067 chr19 59128983 + 22960730 22960957 L1PA5 6144 + 5899 6126 126930 227 chain 21237 chr19 59128983 + 22966123 22966395 MER57E3 465 + 144 417 123068 58 1 2 213 chain 142247 chr19 59128983 + 22977666 22983573 L1PA10 4194 - 78 3252 25766 210 2479 886 60 11 0 26 8 12 7 0 2 126 3 6 100 1121 25 32 0 1 570 317 0 286 1 0 33 11 10 34 9 283 90 1 2 61 0 1 311 chain 17112 chr19 59128983 + 22980953 22981160 LTR2 463 - 253 463 135273 80 0 3 127 chain 14003 chr19 59128983 + 22993341 22993583 MER50 708 - 12 257 144568 6 6 0 44 8 7 65 0 10 48 13 14 22 4 3 26 chain 63534 chr19 59128983 + 23023966 23024803 LTR70 1284 + 9 968 51233 50 6 5 380 0 2 26 0 107 216 0 29 38 2 0 9 14 1 96 chain 23909 chr19 59128983 + 23027642 23027936 AluY 311 + 0 298 110867 4 0 1 28 0 4 88 2 1 172 chain 133050 chr19 59128983 + 23053677 23055201 SVA_D 2077 - 3 2029 27411 133 0 20 430 3 0 102 0 1 12 0 444 15 2 1 13 2 0 253 0 40 553 0 3 6 chain 20624 chr19 59128983 + 23055560 23055811 AluSp 311 - 49 301 125209 130 0 1 121 chain 134379 chr19 59128983 + 23108351 23111408 SVA_F 1814 + 335 1814 27136 545 3 0 66 1036 16 170 0 1 49 556 0 632 chain 16546 chr19 59128983 + 23108970 23109195 SVA_F 1814 + 966 1142 94412 45 0 1 98 50 0 32 chain 2446 chr19 59128983 + 23109137 23109163 SVA_F 1814 + 893 919 193295 26 chain 6153 chr19 59128983 + 23109195 23109400 SVA_F 1814 + 966 1171 89832 205 chain 23728 chr19 59128983 + 23109409 23109782 SVA_F 1814 + 891 1178 111889 56 0 15 39 2 0 4 1 0 75 99 0 47 0 1 50 chain 2394 chr19 59128983 + 23109586 23109615 SVA_F 1814 + 1256 1284 185745 18 1 0 10 chain 1905 chr19 59128983 + 23109650 23109685 SVA_F 1814 + 855 890 146169 35 chain 6258 chr19 59128983 + 23109784 23109899 SVA_F 1814 + 1002 1038 146169 9 79 0 27 chain 7020 chr19 59128983 + 23109793 23109872 SVA_F 1814 + 1186 1265 161273 79 chain 521 chr19 59128983 + 23109936 23110001 SVA_F 1814 + 664 729 163057 65 chain 14725 chr19 59128983 + 23110227 23110442 SVA_F 1814 + 964 1128 142182 37 1 0 10 1 0 87 49 0 30 chain 8710 chr19 59128983 + 23110449 23110542 SVA_F 1814 + 1181 1274 167144 93 chain 3838 chr19 59128983 + 23110588 23110631 SVA_F 1814 + 855 898 154935 43 chain 2232 chr19 59128983 + 23110632 23110676 SVA_F 1814 + 962 1006 148909 44 chain 3481 chr19 59128983 + 23110676 23110715 SVA_F 1814 + 942 996 154935 6 0 15 33 chain 2635 chr19 59128983 + 23110726 23110771 SVA_F 1814 + 1133 1178 169639 45 chain 20404 chr19 59128983 + 23113205 23113423 L1PA4 6152 - 533 751 125880 218 chain 45463 chr19 59128983 + 23113423 23113924 L1PA4 6152 + 5650 6152 62531 213 0 1 288 chain 3467 chr19 59128983 + 23126900 23126939 LTR25 836 + 401 440 215848 39 chain 510052 chr19 59128983 + 23132322 23138461 L1PA6 6164 + 0 6156 6160 190 5 6 4 1 0 369 1 0 596 1 0 281 1 0 273 0 1 361 0 2 241 1 3 535 0 3 171 0 1 152 0 1 26 1 0 5 6 8 166 0 1 1044 3 4 4 1 0 346 4 5 364 0 1 636 2 1 337 0 7 11 chain 25112 chr19 59128983 + 23138963 23139253 AluSp 311 + 10 301 104214 271 0 1 19 chain 6105 chr19 59128983 + 23140407 23140524 LTR25-int 2185 + 1789 1902 184382 11 2 0 22 16 15 52 1 0 13 chain 27237 chr19 59128983 + 23142336 23142643 AluYf4 310 + 0 309 95473 140 0 1 71 0 1 96 chain 4761 chr19 59128983 + 23143246 23143302 L1MA8 2339 + 1853 1909 197792 56 chain 436619 chr19 59128983 + 23161301 23166814 L1PA7 6471 + 941 6467 9146 132 5 6 192 11 12 199 4 1 276 1 0 275 0 1 27 8 10 99 0 1 87 0 2 228 1 0 30 0 2 120 22 1 454 0 4 69 0 3 312 1 2 4 1 0 13 8 0 41 0 1 5 1 0 34 0 3 234 7 9 6 1 0 114 7 9 45 7 6 181 1 0 349 0 7 122 0 8 228 7 8 43 0 5 37 0 5 49 7 0 217 0 1 179 0 1 176 0 1 71 0 2 59 0 1 463 2 3 241 chain 22766 chr19 59128983 + 23185123 23185439 MER57E3 465 + 130 449 116751 42 0 2 155 19 20 100 chain 218613 chr19 59128983 + 23193580 23197088 HERVL-int 5654 - 2743 5654 17965 196 31 32 345 11 10 4 0 1 1142 315 0 437 0 7 15 14 21 395 0 5 36 311 0 50 4 12 138 8 9 56 chain 22455 chr19 59128983 + 23196563 23196832 AluSg7 307 - 36 306 118222 139 0 1 130 chain 31500 chr19 59128983 + 23197088 23197493 MLT2A1 477 - 0 477 81647 29 0 73 170 0 1 24 0 1 8 5 2 169 chain 247504 chr19 59128983 + 23211139 23214613 HERVH-int 3825 - 0 3797 16375 370 0 1 5 23 23 131 3 4 26 0 12 6 2 1 230 1 0 213 12 1 700 12 17 29 1 0 58 0 2 10 5 40 231 0 27 258 9 0 139 0 1 67 11 1 30 4 7 407 1 0 9 0 2 11 62 297 14 8 0 25 25 24 63 1 0 41 0 1 19 55 91 25 0 2 76 17 21 29 chain 39941 chr19 59128983 + 23218805 23219318 HERV1_LTRa 508 - 0 508 69408 49 1 2 7 0 2 41 0 2 163 12 1 12 0 2 180 1 0 5 1 0 30 0 1 11 chain 70767 chr19 59128983 + 23260545 23261567 LTR5_Hs 974 + 0 974 48032 13 0 4 228 0 1 212 1 5 39 69 6 100 22 24 27 0 1 14 3 5 92 13 12 72 0 2 117 chain 122964 chr19 59128983 + 23272550 23274745 THE1A-int 1579 + 0 1574 30061 37 7 5 159 2 1 5 308 0 34 7 11 11 3 6 36 0 1 350 319 0 15 1 0 330 0 2 515 1 0 5 0 1 50 chain 6296 chr19 59128983 + 23312812 23312890 THE1B-int 1605 + 1526 1605 182843 59 0 1 19 chain 78531 chr19 59128983 + 23317147 23318042 SVA_E 1901 + 886 1901 44252 16 0 33 57 26 113 116 0 1 38 2 1 640 chain 25546 chr19 59128983 + 23325203 23325510 AluY 311 + 0 303 102012 128 4 0 175 chain 37564 chr19 59128983 + 23337333 23337792 LTR2 463 - 0 463 72731 22 0 1 308 0 3 129 chain 411222 chr19 59128983 + 23337792 23344841 Harlequin-int 5206 - 0 5071 9772 330 0 4 74 2 1 62 0 1 376 0 5 483 0 3 147 0 1 142 5 4 29 0 2 143 328 0 640 1 0 192 1 0 238 12 13 332 6 7 33 2 0 251 6 5 10 27 0 572 18 10 98 0 5 127 3 0 19 0 1 164 1 0 132 1 3 64 1 3 76 1 0 4 0 1 36 0 5 51 1637 1 163 1 0 8 chain 119247 chr19 59128983 + 23343032 23344605 SVA_B 1603 - 0 1562 31313 146 8 1 56 2 0 129 0 25 137 0 1 43 33 0 83 3 0 4 34 0 2 0 42 57 0 40 296 40 0 500 chain 37580 chr19 59128983 + 23346623 23347078 LTR2 463 - 0 462 72713 333 0 3 8 1 5 113 chain 75178 chr19 59128983 + 23350545 23351588 MER11C 1089 + 0 1063 45938 247 7 16 50 0 4 69 2 1 35 0 1 111 45 44 112 15 18 29 0 1 82 0 3 40 0 1 4 1 0 169 0 1 25 chain 41034 chr19 59128983 + 23353322 23353911 LTR61 567 + 0 558 67853 17 12 0 38 17 11 19 6 0 107 5 0 30 1 2 135 5 0 10 8 13 136 3 0 40 chain 130379 chr19 59128983 + 23355340 23356834 SVA_D 2077 + 12 2077 27996 23 6 0 180 0 1 18 0 1 307 0 40 140 15 18 21 3 0 117 0 535 664 chain 85016 chr19 59128983 + 23360626 23361590 L1P1 4361 - 168 1131 41506 42 1 0 921 chain 47711 chr19 59128983 + 23362545 23363101 LTR6B 557 - 0 557 60684 202 0 1 284 0 1 22 1 0 47 chain 52854 chr19 59128983 + 23364144 23365767 HERVS71-int 4705 - 543 2321 57100 13 2 0 8 2 0 17 29 25 6 1 0 41 11 8 8 1 0 6 2 1 10 7 5 11 2 1 39 1 0 21 7 20 7 16 0 13 1 0 4 4 2 17 1 0 22 4 1 33 13 10 19 13 9 26 1 0 4 2 0 4 1 0 7 1 0 29 1 0 5 2 0 5 11 8 9 1 0 9 2 0 13 1 0 35 1 0 16 2 0 55 5 2 30 7 6 27 26 25 51 77 68 27 1 0 5 1 0 9 15 9 20 45 321 12 14 5 14 1 0 9 1 0 10 2 0 30 2 6 4 1 0 25 3 1 17 56 41 16 1 0 9 7 5 10 1 0 11 15 9 22 8 7 10 2 0 16 15 42 19 1 0 55 1 0 37 4 1 11 2 1 11 1 0 5 1 0 9 78 57 11 7 4 8 1 0 16 chain 47076 chr19 59128983 + 23369078 23369633 LTR6B 557 - 2 557 61144 195 0 1 312 2 1 46 chain 52353 chr19 59128983 + 23369633 23370308 HERVH-int 3825 + 3160 3825 57396 373 9 13 20 17 1 33 0 2 223 chain 40478 chr19 59128983 + 23383038 23383498 LTR2 463 + 0 463 68621 127 0 3 333 chain 24829 chr19 59128983 + 23389780 23390076 AluY 311 + 4 301 105727 117 5 6 174 chain 30245 chr19 59128983 + 23391207 23391523 AluYb8 318 + 0 316 84068 316 chain 14937 chr19 59128983 + 23400603 23400810 AluY 311 + 36 260 141514 95 7 8 49 0 3 28 7 20 21 chain 23494 chr19 59128983 + 23413701 23413974 AluSp 311 - 28 301 113152 273 chain 32135 chr19 59128983 + 23418501 23418914 LTR70 1284 - 819 1233 80630 244 5 6 164 chain 21838 chr19 59128983 + 23420906 23421181 AluY 311 + 21 303 120861 111 0 1 126 1 7 37 chain 3649 chr19 59128983 + 23433609 23433720 MER33 330 - 35 152 212807 7 0 2 4 1 0 23 1 0 9 41 47 25 chain 23202 chr19 59128983 + 23458028 23458306 AluSc5 308 + 29 307 114675 278 chain 35165 chr19 59128983 + 23468124 23468612 MER9a3 513 + 0 513 75963 18 0 2 91 0 1 67 8 9 70 0 17 146 0 1 7 11 14 70 chain 125862 chr19 59128983 + 23472169 23473631 SVA_B 1603 - 0 1603 29138 302 0 2 128 0 2 205 0 80 248 0 39 450 0 1 102 1 8 7 0 10 19 chain 17837 chr19 59128983 + 23479408 23479702 L1PA8 5853 - 0 289 133279 69 15 16 8 1 0 19 2 1 52 20 18 62 2 0 44 chain 7930 chr19 59128983 + 23482522 23482709 L1PA12 2803 - 2239 2423 171444 65 65 62 57 chain 68465 chr19 59128983 + 23528070 23529395 HERVH48-int 3304 + 188 1388 49061 11 9 7 20 2 0 32 7 1 5 1 0 12 2 1 9 11 6 4 1 0 66 6 2 8 1 0 27 1 0 42 4 3 14 34 22 52 0 1 19 1 0 7 12 11 30 36 6 20 8 0 3 1 0 17 4 0 17 1 0 4 3 1 67 3 1 38 0 1 4 2 0 27 7 6 64 48 40 54 1 0 41 1 0 11 1 0 20 1 0 13 2 0 35 6 1 19 2 0 6 2 1 16 1 0 20 2 0 42 3 0 10 11 5 121 2 1 11 1 0 9 1 0 36 chain 257716 chr19 59128983 + 23535370 23538983 L1PB1 5432 + 1419 4978 15828 179 0 5 374 14 15 322 5 7 48 11 13 64 2 1 52 0 1 8 0 1 16 6 7 50 0 5 299 0 3 200 34 10 221 4 0 206 3 5 197 6 15 121 3 5 269 0 5 74 4 5 5 0 1 39 0 3 34 8 7 74 2 0 18 0 1 171 54 5 133 7 8 81 11 13 63 32 11 89 chain 19597 chr19 59128983 + 23539762 23540002 AluSg 306 + 13 254 128390 18 0 1 222 chain 63801 chr19 59128983 + 23548373 23549085 SVA_D 2077 - 3 765 51098 619 0 1 31 0 49 62 chain 63075 chr19 59128983 + 23552136 23552820 SVA_C 1631 + 943 1628 51414 60 0 1 624 chain 39512 chr19 59128983 + 23562003 23562531 LTR70 1284 - 745 1277 70008 182 29 33 317 chain 4964 chr19 59128983 + 23580252 23580311 LTR10A 586 + 205 264 195545 59 chain 141925 chr19 59128983 + 23601439 23603055 SVA_C 1631 + 18 1631 25835 8 2 0 539 1 2 436 1 2 102 1 0 69 9 0 122 0 7 326 chain 555601 chr19 59128983 + 23612935 23619087 L1PA3long 6157 - 0 6157 763 140 13 13 690 0 4 4206 0 1 1103 chain 17857 chr19 59128983 + 23633945 23634240 L1PA8 5853 - 0 289 133221 93 1 0 18 3 2 34 38 36 60 2 0 46 chain 448955 chr19 59128983 + 23634561 23640678 L1PA7 6471 - 4 6466 8789 447 6 10 300 1 0 6 0 1 74 0 5 631 9 8 497 1 2 1243 4 0 6 0 4 582 23 24 846 0 1 81 0 1 4 0 1 198 4 13 63 8 13 135 0 25 98 0 1 24 28 11 45 57 78 112 8 84 31 45 54 29 4 5 9 0 19 19 45 45 15 56 253 192 22 8 109 chain 25208 chr19 59128983 + 23659874 23660167 MER9a2 513 - 218 511 103698 293 chain 2938 chr19 59128983 + 23683537 23683824 L1MB2 1706 + 1372 1658 226359 30 235 234 22 chain 6115 chr19 59128983 + 23702908 23703005 MER41B 635 + 27 128 184313 14 5 6 33 4 7 41 chain 36867 chr19 59128983 + 23714880 23715380 MER9B 498 + 8 498 73701 145 12 11 141 7 0 105 1 0 17 1 0 71 chain 132208 chr19 59128983 + 23715638 23717184 SVA_C 1631 - 0 1631 27587 587 0 41 19 0 1 79 1 0 25 0 1 8 22 23 139 0 40 52 1 3 613 chain 324674 chr19 59128983 + 23717770 23722967 HERVK9-int 4720 + 334 4690 12407 195 1 0 4 0 1 313 0 1 131 5 6 269 1 0 23 0 21 336 0 1 27 0 3 624 0 1 645 0 3 229 5 8 133 2 0 27 7 5 198 6 17 216 8 17 597 1061 176 51 0 4 67 9 0 7 chain 19595 chr19 59128983 + 23722598 23722829 L1PA4 6152 + 5921 6152 128397 231 chain 31956 chr19 59128983 + 23722997 23723463 MER9B 498 + 8 493 80928 145 21 20 20 0 1 113 0 17 48 5 7 31 1 0 4 9 7 37 0 3 32 chain 63009 chr19 59128983 + 23739832 23740651 HERVK22-int 3844 + 2054 2927 51442 29 0 3 338 0 44 187 0 5 104 0 1 87 11 12 63 chain 89667 chr19 59128983 + 23750682 23751763 SVA_A 1864 + 10 1852 39757 5 3 0 271 1 0 135 0 747 345 0 3 98 0 13 186 0 2 37 chain 3032 chr19 59128983 + 23754373 23754490 MER9a2 513 - 0 117 70377 117 chain 84451 chr19 59128983 + 23754495 23755501 LTR13 1007 + 0 1007 41741 381 4 5 570 5 7 6 2 0 38 chain 10030 chr19 59128983 + 23755501 23755888 MER9a2 513 - 117 513 70377 352 0 12 13 3 0 19 chain 242232 chr19 59128983 + 23755888 23759008 HERVK9-int 4720 - 0 4714 16659 277 0 11 71 0 15 215 0 7 88 0 1 7 0 1 35 5 6 646 51 689 148 0 10 23 0 1 4 2 1 44 0 924 287 6 14 168 0 1 4 4 3 384 4 0 32 0 1 80 0 2 7 2 0 115 11 10 183 4 6 37 1 0 17 13 12 13 1 0 62 1 0 4 8 5 13 19 7 8 1 0 15 chain 40702 chr19 59128983 + 23759617 23760120 MER9a2 513 - 6 513 68299 51 0 4 292 4 5 4 1 0 151 chain 30074 chr19 59128983 + 23774326 23774643 AluYb8 318 + 0 317 84588 317 chain 116263 chr19 59128983 + 23776938 23778264 SVA_D 2077 + 12 1816 32355 543 0 40 321 6 43 33 0 1 6 1 403 48 1 0 80 1 0 286 chain 34201 chr19 59128983 + 23781159 23781617 LTR2 463 - 0 463 77347 65 35 36 76 0 4 282 chain 531053 chr19 59128983 + 23796237 23802462 L1PA5 6144 + 3 6141 4075 132 6 20 316 7 8 381 0 1 583 0 4 1004 5 0 388 1 0 324 2 1 109 100 0 184 0 1 1199 1 0 211 0 1 365 0 1 57 0 1 79 0 1 761 4 0 6 chain 235216 chr19 59128983 + 23818734 23822182 L1PB1 5432 + 1980 5420 17015 318 36 36 21 0 2 18 0 4 14 16 7 7 0 9 84 4 1 127 0 5 209 1 0 97 23 15 59 9 0 73 3 0 5 0 3 6 1 0 4 0 9 47 1 2 315 0 4 34 1 0 214 2 4 214 4 6 337 6 1 64 10 25 29 4 5 36 0 1 57 0 1 36 0 1 63 17 12 86 1 0 260 0 4 79 5 12 17 1 4 20 36 31 12 2 1 10 5 1 9 2 0 53 2 1 16 1 0 34 10 9 14 27 14 19 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 21768 chr19 59128983 + 23825383 23825625 L1PA3long 6157 + 5914 6156 121145 242 chain 144635 chr19 59128983 + 23849761 23851893 LTR12C 1709 - 0 1709 25378 481 0 4 106 3 1 5 1 0 3 76 0 195 7 9 68 1 0 175 350 0 224 0 1 437 chain 3610 chr19 59128983 + 23850391 23850436 LTR12C 1709 - 633 760 131639 26 0 82 19 chain 3862 chr19 59128983 + 23850882 23850934 LTR12C 1709 - 609 663 153658 26 7 9 19 chain 15103 chr19 59128983 + 23850937 23851224 LTR12C 1709 - 823 1035 82791 28 0 2 19 1 0 42 84 8 113 chain 4523 chr19 59128983 + 23851034 23851111 LTR12C 1709 - 763 840 150877 77 chain 10799 chr19 59128983 + 23856476 23856639 L1PA8 5853 + 5691 5853 156995 49 2 1 10 10 10 92 chain 6652 chr19 59128983 + 23861387 23861613 L1PREC2 3366 + 2725 2934 180073 26 3 1 13 5 3 29 26 30 23 1 0 4 3 0 12 51 40 16 2 0 12 chain 68474 chr19 59128983 + 23875489 23876388 LTR5_Hs 974 + 0 974 49056 169 1 0 120 0 1 123 0 72 82 0 1 4 1 0 84 1 0 35 1 0 125 11 18 19 20 18 103 chain 30513 chr19 59128983 + 23883372 23883822 MER41C 542 + 65 542 83399 189 0 4 52 5 26 19 38 40 147 chain 22106 chr19 59128983 + 23886121 23886392 AluY 311 + 39 311 119750 93 0 1 178 chain 24393 chr19 59128983 + 23889043 23889353 AluY 311 + 0 306 108116 44 13 9 253 chain 78413 chr19 59128983 + 23901362 23902444 MER11C 1089 + 0 1063 44315 250 13 14 49 1 5 38 4 0 66 7 5 22 28 4 79 7 35 9 27 0 114 0 4 5 1 0 38 0 1 127 0 1 197 chain 83626 chr19 59128983 + 23906459 23907426 LTR5_Hs 974 - 0 974 42062 37 0 21 376 1 2 267 11 0 189 1 0 19 3 0 63 chain 40920 chr19 59128983 + 23919658 23920163 MER9a1 513 + 0 509 68011 219 0 2 194 2 5 4 1 0 85 chain 34229 chr19 59128983 + 23931063 23931460 LTR3 431 + 19 416 77311 397 chain 4973 chr19 59128983 + 23973935 23973993 MER57E3 465 - 45 103 195443 58 chain 39586 chr19 59128983 + 23983141 23984039 LTR70 1284 + 302 899 69909 22 0 2 14 2 0 5 0 2 5 4 5 10 1 12 199 311 0 195 1 3 73 36 30 20 chain 4932 chr19 59128983 + 24006810 24006992 LTR4 552 - 44 228 195902 27 97 103 8 4 0 46 chain 14480 chr19 59128983 + 24018819 24019158 L1PB1 5432 - 8 317 142951 4 1 0 16 1 0 8 6 5 21 1 0 24 2 0 14 13 10 13 0 2 10 14 2 15 1 0 43 1 0 16 2 1 50 3 1 10 29 23 21 chain 21250 chr19 59128983 + 24024021 24024282 AluY 311 + 37 299 123020 95 6 7 160 chain 71312 chr19 59128983 + 24030120 24031086 MER11A 1151 - 0 1151 47789 51 16 15 182 0 82 16 1 0 58 0 4 52 6 9 123 1 0 12 12 13 90 0 1 54 0 1 94 12 9 107 0 99 79 chain 97880 chr19 59128983 + 24032269 24038243 HERVK11-int 2540 - 309 1854 37306 121 4 8 79 1 0 111 2 0 77 1 0 104 15 10 399 2 1 30 0 4 33 12 1 35 14 4 25 3 0 9 7 6 45 1 0 64 2 0 34 1 0 22 66 41 60 4322 3 14 1 0 13 6 3 41 11 0 8 13 1 7 5 0 18 15 7 21 2 0 21 7 0 14 5 0 51 chain 36426 chr19 59128983 + 24035090 24035588 MER9a1 513 - 0 513 74331 57 21 13 148 1 2 5 1 0 17 0 22 84 1 2 163 chain 58527 chr19 59128983 + 24039423 24040241 MER11A 1151 - 0 1151 53683 66 1 0 9 0 6 177 1 83 5 1 0 56 0 4 54 6 9 183 0 142 29 0 2 30 10 7 135 9 108 46 chain 45412 chr19 59128983 + 24044980 24045528 L1P1 4361 - 20 557 62579 12 2 1 23 1 0 155 1 0 230 0 1 74 10 1 40 chain 18493 chr19 59128983 + 24047630 24047858 LTR3 431 + 202 431 131518 112 0 1 116 chain 32213 chr19 59128983 + 24053600 24053989 LTR3 431 + 0 390 80497 307 0 1 82 chain 11686 chr19 59128983 + 24065789 24065976 HERVK22-int 3844 - 0 182 153540 21 5 1 57 22 21 82 chain 540187 chr19 59128983 + 24073247 24079257 L1PA2 6032 - 3 6029 2791 148 1 0 688 2 0 7 0 4 366 0 1 202 0 15 3666 2 1 566 0 1 108 2 1 252 chain 35911 chr19 59128983 + 24087173 24087666 MER9a3 513 + 0 513 75002 18 0 2 91 0 1 52 2 1 91 5 4 14 4 22 137 2 3 77 chain 17056 chr19 59128983 + 24098686 24098962 MER57E3 465 - 203 465 135445 72 7 0 46 6 5 7 1 0 3 1 0 8 3 0 76 4 3 42 chain 11395 chr19 59128983 + 24103643 24103778 LTR10C 591 - 76 212 154723 4 0 1 131 chain 92562 chr19 59128983 + 24119576 24120666 SVA_D 2077 - 316 1745 38797 323 1 0 33 0 48 18 0 305 87 3 0 4 6 0 27 2 0 13 2 0 142 3 0 33 0 3 393 chain 38517 chr19 59128983 + 24129884 24130319 HERV17-int 4347 + 3913 4347 71416 132 1 0 302 chain 28858 chr19 59128983 + 24130628 24130952 LTR17 781 + 0 326 89625 307 0 2 17 chain 137868 chr19 59128983 + 24146229 24147935 SVA_C 1631 + 57 1625 26504 780 138 0 14 4 0 152 1 2 72 0 3 545 chain 3035 chr19 59128983 + 24147027 24147061 SVA_C 1631 + 851 885 161941 34 chain 7628 chr19 59128983 + 24147061 24147147 SVA_C 1631 + 843 925 141899 9 4 0 73 chain 163244 chr19 59128983 + 24188112 24190049 HERVK9-int 4720 - 2552 4499 22916 5 0 3 320 0 1 252 0 2 184 0 2 371 0 1 37 6 7 762 chain 28400 chr19 59128983 + 24194626 24194925 AluYa5 310 - 11 310 91581 299 chain 536808 chr19 59128983 + 24196180 24202279 L1PA4 6152 - 1 6146 3339 1361 0 1 437 0 4 1033 5 7 242 0 3 5 3 0 260 0 1 1103 0 37 415 1 0 473 1 2 48 0 1 712 chain 24174 chr19 59128983 + 24220405 24220695 AluSp 311 - 6 296 109352 290 chain 130594 chr19 59128983 + 24223934 24225498 LTR12C 1709 + 0 1707 27944 78 1 2 21 8 7 7 0 1 193 0 1 4 1 0 498 0 40 259 1 0 5 3 1 107 0 4 212 0 101 166 chain 8677 chr19 59128983 + 24253840 24253941 LTR9B 643 - 82 183 167318 101 chain 10085 chr19 59128983 + 24265481 24265620 MER4E1 777 + 600 744 160157 19 3 8 117 chain 160943 chr19 59128983 + 24293756 24295542 L1PA3long 6157 - 0 1790 23163 843 0 4 943 chain 256134 chr19 59128983 + 24295542 24298486 L1PA3long 6157 + 3204 6157 15927 130 1 0 508 8 4 60 0 1 448 0 8 947 0 4 618 0 1 57 20 13 9 0 7 138 chain 173344 chr19 59128983 + 24298499 24300641 L1P1 4361 - 2220 4359 21672 1104 0 2 328 12 5 24 0 4 6 5 1 93 0 2 570 chain 148095 chr19 59128983 + 24313812 24318311 L1PB1 5432 - 341 4033 24863 39 1 0 6 8 9 48 17 18 123 2388 1561 124 6 8 90 2 1 169 1 4 26 0 3 20 2 4 18 1 0 164 1 0 67 0 3 100 1 7 35 0 1 486 2 1 78 0 2 61 1 0 69 13 14 229 0 1 103 chain 40751 chr19 59128983 + 24314054 24314572 LTR10C 591 - 0 591 68236 81 0 2 330 0 72 65 8 7 34 chain 533760 chr19 59128983 + 24330335 24336489 L1PA3long 6157 - 0 6142 3735 12 9 12 130 3 4 690 1 5 319 1 2 478 0 1 146 0 4 840 0 1 127 30 0 121 0 3 78 1 0 2862 5 6 301 chain 31685 chr19 59128983 + 24341094 24346492 MER9a2 513 - 4 513 81346 66 0 7 19 0 1 227 4905 8 181 chain 125907 chr19 59128983 + 24350499 24352229 HERV17-int 4347 - 466 4320 29129 57 0 4 38 5 9 38 0 1672 71 0 1 5 1 0 198 0 7 68 0 1 239 13 10 44 17 0 71 0 1 388 4 21 26 1 0 51 1 13 52 0 1 6 25 454 64 1 0 65 0 1 29 5 6 31 1 0 26 2 0 35 1 0 51 chain 35503 chr19 59128983 + 24358787 24359199 L1PA4 6152 - 1 414 75548 35 1 2 376 chain 93810 chr19 59128983 + 24359207 24360273 L1PA4 6152 + 4671 5738 38409 630 1 2 435 chain 12497 chr19 59128983 + 24380593 24382770 L1PA4 6152 - 12 2192 9889 718 0 1 126 0 1 533 0 1 800 chain 81726 chr19 59128983 + 24382780 24383735 L1PA4 6152 - 2214 3171 42769 199 0 1 401 0 1 355 chain 125127 chr19 59128983 + 24383735 24385256 L1PA4 6152 + 4628 6152 29352 666 0 1 134 0 1 533 34 42 6 7 0 141 chain 12721 chr19 59128983 + 24385551 24385705 MER11D 897 + 0 154 149370 154 chain 64168 chr19 59128983 + 24389522 24390253 L1PA4 6152 + 5411 6143 50931 590 0 1 141 chain 477646 chr19 59128983 + 24414538 24420187 L1PA4 6152 + 495 6151 7807 380 5 10 351 1 0 215 0 4 924 7 5 5 0 3 802 9 10 993 3 0 468 1 0 458 1 2 5 1 0 727 0 1 4 1 0 132 0 1 156 chain 67432 chr19 59128983 + 24425478 24426390 MER11B 1079 + 1 961 49474 26 17 10 211 0 31 37 1 18 203 0 1 4 1 0 70 0 1 7 5 11 330 chain 62115 chr19 59128983 + 24429734 24430650 HERVK11-int 2540 + 1218 2098 51843 8 1 0 22 17 6 28 33 13 421 19 15 104 2 1 76 0 1 50 0 1 61 6 5 68 chain 42060 chr19 59128983 + 24431293 24431766 L1PA3long 6157 - 1337 1814 66235 466 0 4 7 chain 116030 chr19 59128983 + 24431766 24433088 L1PA3long 6157 + 4832 6155 32443 686 0 1 636 chain 72239 chr19 59128983 + 24446582 24447454 L1PA4 6152 - 9 2159 47361 36 4 0 244 0 1 428 0 1276 92 0 1 62 0 4 6 chain 22669 chr19 59128983 + 24447486 24451435 L1PA4 6152 - 2192 6152 9889 91 1 0 99 0 1 476 0 1 138 0 1 389 0 1 561 0 2 963 0 1 193 1 4 9 1 0 51 4 5 644 0 2 328 chain 27490 chr19 59128983 + 24462694 24463057 L1PA4 6152 + 4742 5107 94679 18 0 1 210 6 7 129 chain 54820 chr19 59128983 + 24463058 24463717 L1PA4 6152 + 5109 5772 55822 195 0 4 376 0 2 5 2 0 81 chain 27933 chr19 59128983 + 24463717 24464078 L1PA4 6152 + 5782 6143 93231 361 chain 387742 chr19 59128983 + 24464172 24468720 L1PA3long 6157 - 0 6151 10530 258 0 1 356 0 32 779 9 1566 1716 0 9 455 1 2 399 9 11 221 19 20 326 chain 27801 chr19 59128983 + 24494826 24495126 AluYa5 310 - 10 310 93688 300 chain 10825 chr19 59128983 + 24504700 24505017 HERVK11-int 2540 + 678 941 156892 59 5 0 14 22 15 6 2 0 21 77 41 41 8 5 10 17 16 35 chain 17915 chr19 59128983 + 24508522 24508746 MER11B 1079 + 832 1057 133071 201 0 1 23 chain 79508 chr19 59128983 + 24554193 24555264 MER11C 1089 + 0 1075 43821 220 0 5 62 1 2 91 5 6 36 25 31 241 11 1 176 0 1 203 chain 10732 chr19 59128983 + 24570293 24570415 L1HS 6032 - 5909 6031 157268 122 chain 520540 chr19 59128983 + 24576841 24582745 L1PA2 6032 + 1 6012 5102 852 0 1 398 0 1 1275 0 106 2421 3 1 250 1 2 387 0 1 170 5 0 7 0 6 74 3 1 58 chain 448068 chr19 59128983 + 24588725 24593794 L1PA3long 6157 - 5 5076 8810 2274 0 2 705 1 0 1459 0 1 630 chain 101193 chr19 59128983 + 24596575 24597742 L1PA3long 6157 - 0 1171 36467 26 0 1 255 0 1 771 0 1 65 1 2 49 chain 84791 chr19 59128983 + 27741797 27742736 L1PA2 6032 - 7 945 41598 255 1 0 683 chain 151209 chr19 59128983 + 27746305 27748027 L1PA3long 6157 + 4430 6151 24447 799 1 0 4 0 1 73 1 0 844 chain 51585 chr19 59128983 + 27761717 27762309 L1PA3long 6157 + 5565 6157 57901 592 chain 52064 chr19 59128983 + 27763512 27764105 L1PA2 6032 + 5437 6027 57585 582 3 0 8 chain 496276 chr19 59128983 + 27771465 27777322 L1PA3long 6157 - 1 6012 7052 1805 0 3 17 0 1 450 0 1 266 0 1 434 0 1 357 0 6 490 1 2 41 1 0 167 0 3 163 1 0 21 0 2 598 13 22 265 2 1 130 0 128 41 1 0 4 1 2 581 0 1 7 chain 199201 chr19 59128983 + 27785205 27810713 L1PA3long 6157 - 14 2843 19269 125 0 2 118 13 12 586 1 0 581 22680 0 1227 0 1 177 chain 28576 chr19 59128983 + 27786714 27787047 L1PA3long 6157 - 1522 1855 90482 333 chain 9137 chr19 59128983 + 27787047 27788388 L1PA3long 6157 + 2956 4298 22167 764 0 1 577 chain 32780 chr19 59128983 + 27792997 27793450 L1PA3long 6157 - 0 430 79565 74 28 5 351 chain 17233 chr19 59128983 + 27809047 27809258 L1PA3long 6157 - 1181 1392 134973 211 chain 7767 chr19 59128983 + 27810713 27811853 L1PA3long 6157 + 5005 6149 22167 320 1 2 261 0 1 395 1 3 162 chain 481670 chr19 59128983 + 27815279 27821244 L1PA3long 6157 + 444 6157 7664 59 0 1 354 10 0 152 0 1 160 11 12 237 1 0 23 3 0 6 5 14 902 0 1 403 0 1 400 1 2 58 0 1 1085 258 0 1570 12 13 116 1 3 131 0 1 7 chain 14192 chr19 59128983 + 27819240 27819393 L1PA3long 6157 - 3048 3201 143913 153 chain 140916 chr19 59128983 + 27837359 27839064 L1P1 4361 - 1808 3517 26002 245 0 1 219 0 1 47 0 1 1012 1 2 181 chain 78975 chr19 59128983 + 27862047 27862985 L1PA3long 6157 + 4296 5233 44071 933 1 0 4 chain 78542 chr19 59128983 + 27862985 27863902 L1PA3long 6157 + 5234 6157 44246 754 3 4 24 0 4 119 0 1 17 chain 129541 chr19 59128983 + 27865516 27867117 L1PA3long 6157 - 8 1616 28193 225 9 11 106 0 1 42 1 3 376 1 2 94 0 1 41 12 13 96 0 1 563 5 3 30 chain 2964 chr19 59128983 + 27883620 27883806 LTR12C 1709 - 806 1033 225830 31 1 41 11 126 127 17 chain 2338 chr19 59128983 + 27908755 27908780 L1PA3long 6157 + 4616 4641 234908 25 chain 133288 chr19 59128983 + 27908781 27910296 L1PA3long 6157 + 4641 6156 27374 1515 chain 117283 chr19 59128983 + 27916929 27918255 L1PA3long 6157 - 1 1327 32029 1326 chain 45636 chr19 59128983 + 27918255 27918769 L1PA3long 6157 + 3695 4209 62364 514 chain 55045 chr19 59128983 + 27918771 27919374 L1PA3long 6157 + 4209 4812 55679 603 chain 57187 chr19 59128983 + 27952095 27952796 L1PA4 6152 - 1077 1780 54357 48 1 2 395 0 1 257 chain 88833 chr19 59128983 + 27952796 27953860 L1PA4 6152 + 5094 6151 40068 284 9 1 4 0 1 767 chain 447425 chr19 59128983 + 27954416 27960632 L1PA4 6152 + 663 6148 8833 72 11 12 347 10 11 328 1 0 214 0 17 52 1 0 250 1 0 720 1 2 138 769 12 579 1 5 518 0 1 384 0 3 416 0 1 4 12 11 541 0 1 112 2 1 469 0 1 263 chain 66238 chr19 59128983 + 27956567 27957312 L1PA3long 6157 + 5411 6157 49989 699 0 1 46 chain 49695 chr19 59128983 + 27989904 27990486 L1PA3long 6157 + 5570 6156 59241 429 1 4 11 0 1 141 chain 287809 chr19 59128983 + 27991887 28009882 L1PA4 6152 - 6 3903 14171 137 0 1 174 0 1 661 14230 146 24 0 2 79 0 1 251 5 4 715 0 1 175 0 1 50 35 13 27 8 9 68 0 1 401 0 1 542 1 0 412 chain 224096 chr19 59128983 + 27992859 27995481 L1PA4 6152 + 2531 5147 17648 479 0 9 930 0 1 141 0 2 255 0 4 425 22 0 370 chain 21597 chr19 59128983 + 28009882 28010162 L1PA4 6152 + 5028 5304 121203 125 2 1 145 3 0 5 chain 38819 chr19 59128983 + 28010168 28010670 L1PA4 6152 + 5314 5817 70991 389 5 6 108 chain 25043 chr19 59128983 + 28010670 28010991 L1PA4 6152 + 5818 6143 104580 276 4 8 41 chain 73224 chr19 59128983 + 28053279 28054130 L1PA4 6152 + 5293 6146 46915 706 4 0 9 0 5 115 1 2 16 chain 383791 chr19 59128983 + 28087429 28093937 L1PA4 6152 - 14 6077 10646 136 0 1 521 0 1 109 0 135 606 1 0 334 1792 1192 13 0 1 637 2 13 119 2 0 876 0 1 408 0 1 159 3 4 419 3 9 317 6 5 5 0 1 40 chain 146582 chr19 59128983 + 28089136 28090863 L1P1 4361 + 2598 4328 25020 62 1 0 592 0 5 480 0 1 412 1 0 155 1 0 23 chain 75128 chr19 59128983 + 28128497 28129492 LTR5_Hs 974 - 0 974 45956 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 210 28 1 78 chain 559589 chr19 59128983 + 28130272 28137361 HERVK-int 6823 - 241 6823 381 6 5 0 7 1 0 6 1 0 17 35 26 11 1 0 5 1 0 26 1 0 4 2 1 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 33 18 13 126 70 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 24 1 0 6 2 0 76 1 0 4 1 0 7 1 0 4 3 0 49 1 0 125 1 0 35 1 0 101 1 0 22 1 0 197 1 0 10 4 3 963 323 0 1391 9 0 783 1 0 543 1 0 7 2 0 372 1 0 439 1 0 310 1 0 21 1 0 24 2 0 207 1 0 305 12 0 17 18 15 18 1 0 39 1 0 19 1 0 23 1 0 3 1 0 11 1 0 5 chain 29550 chr19 59128983 + 28132458 28132768 AluYa5 310 - 0 310 86420 310 chain 12890 chr19 59128983 + 28169430 28169693 LTR5B 1012 - 729 1004 148671 40 10 8 6 0 2 85 4 17 22 54 53 42 chain 522177 chr19 59128983 + 28186357 28192495 L1PA4 6152 - 9 6151 4939 1983 0 4 274 0 1 140 0 1 51 2 0 271 0 1 290 1 2 1497 1 0 592 1 0 1035 chain 77554 chr19 59128983 + 28196453 28201990 HERVK11-int 2540 - 339 1862 44711 57 1 2 31 5 7 74 6 5 190 6 5 100 25 20 421 21 1 34 167 140 34 3 4 10 1 0 4 1 0 22 55 39 16 3936 44 50 2 1 12 3 0 44 147 97 59 chain 74734 chr19 59128983 + 28203168 28204218 MER11C 1089 - 26 1089 46146 197 0 1 127 0 1 38 1 0 5 0 4 91 10 8 12 48 47 146 1 0 46 1 0 22 1 5 58 8 17 238 chain 16531 chr19 59128983 + 28280058 28280242 L1PA3long 6157 - 1154 1338 136608 184 chain 102891 chr19 59128983 + 28280242 28281377 L1PA3long 6157 + 5018 6157 36025 173 0 1 566 0 3 396 chain 71485 chr19 59128983 + 28290230 28291264 MER11C 1089 + 9 1063 47702 238 0 9 59 8 12 172 8 10 24 46 45 112 1 5 4 1 0 38 0 1 127 7 8 47 34 33 40 0 2 68 chain 79280 chr19 59128983 + 28292738 28293750 LTR13 1007 - 0 1007 43921 38 2 0 47 0 2 98 6 7 130 0 2 54 2 1 140 0 2 36 8 1 4 1 0 59 4 5 131 2 0 250 chain 29271 chr19 59128983 + 28305385 28305719 L1PA4 6152 + 5818 6152 87688 334 chain 16976 chr19 59128983 + 28307990 28308276 L1PA8 5853 - 0 280 135650 89 22 20 42 0 7 7 19 10 70 3 1 34 chain 124082 chr19 59128983 + 28310240 28311638 L1PA4 6152 + 4747 6146 29674 554 7 5 447 0 3 34 0 1 208 1 0 147 chain 8971 chr19 59128983 + 28331779 28331889 MER4A1 472 + 0 111 165772 39 0 1 71 chain 12702 chr19 59128983 + 28338220 28338381 LTR66 600 - 439 600 149440 161 chain 496529 chr19 59128983 + 28343610 28349736 L1PA6 6164 + 0 6161 7036 403 1 0 106 2 1 112 0 1 164 0 17 627 0 5 10 1 0 44 0 1 58 0 1 849 0 4 50 0 9 333 0 4 384 1 2 11 0 1 18 0 1 703 17 18 68 0 3 199 0 1 65 0 3 327 0 1 6 1 0 69 1 0 196 0 1 172 1 0 265 1 2 263 0 1 253 2 1 171 16 17 54 27 13 66 2 0 7 chain 304769 chr19 59128983 + 28353416 28356862 L1PA5 6144 - 3 3448 13217 1513 1 0 767 0 1 656 3 2 506 chain 20121 chr19 59128983 + 28378372 28378713 THE1D 372 - 0 372 126766 51 0 1 8 4 9 79 43 64 15 8 12 37 0 1 70 1 0 25 chain 17114 chr19 59128983 + 28405992 28406190 L1PA7 6471 - 1 198 135269 156 1 0 41 chain 510183 chr19 59128983 + 28433402 28440729 L1PA6 6164 - 6 6164 6148 34 5 6 667 0 3 924 1209 0 874 0 5 122 1 2 341 2 1 4 0 2 88 0 8 372 4 7 239 0 4 130 0 2 220 1 0 7 8 7 40 0 1 498 0 1 266 0 12 704 1 0 102 5 6 459 chain 70506 chr19 59128983 + 28435038 28436237 MER11A 1151 + 0 1147 48162 54 2 101 23 13 5 46 1 0 65 4 0 31 161 0 115 5 6 68 0 1 23 0 1 27 0 1 107 1 0 4 0 1 4 5 7 131 10 43 19 18 0 37 0 1 60 6 7 159 chain 18615 chr19 59128983 + 28486880 28487104 L1P1 4361 - 3762 3986 131173 224 chain 53309 chr19 59128983 + 28499056 28499730 LTR12_ 688 - 10 688 56826 218 11 12 355 0 2 60 0 1 30 chain 25786 chr19 59128983 + 28521473 28521826 THE1B 368 - 2 368 100932 54 15 14 124 1 0 115 0 15 44 chain 447993 chr19 59128983 + 28541998 28548370 L1PA7 6471 + 531 6438 8812 35 2 3 144 0 113 28 1 6 127 13 12 120 0 3 140 0 40 495 0 1 340 1 0 100 0 1 249 0 6 39 10 24 72 0 1 186 699 2 282 0 4 160 1 2 47 0 1 376 0 1 138 1 0 117 1 0 63 3 0 502 7 8 55 0 1 380 1 0 97 0 5 191 1 8 336 7 11 19 10 8 70 0 2 195 25 0 242 0 1 82 6 20 143 0 40 13 chain 58949 chr19 59128983 + 28544114 28544772 L1PA2 6032 + 5374 6032 53431 492 5 0 7 1 6 153 chain 12856 chr19 59128983 + 28562500 28562648 L1PA3long 6157 + 6012 6157 148817 6 3 0 139 chain 7199 chr19 59128983 + 28569179 28569293 MER4C 627 + 0 112 176069 76 14 12 24 chain 37246 chr19 59128983 + 28575739 28576170 L1PA4 6152 + 5708 6139 73173 431 chain 509946 chr19 59128983 + 28578556 28584392 L1PA4 6152 + 0 6152 6171 542 0 1 306 5 4 125 0 1 252 5 7 1465 0 5 6 0 1 778 0 4 112 0 2 1054 1 0 697 9 310 329 0 1 150 chain 25965 chr19 59128983 + 28595474 28595780 AluYk4 311 + 0 301 100156 168 5 0 133 chain 6350 chr19 59128983 + 28603346 28603600 L1PB3 3668 + 3409 3566 182376 38 131 38 16 5 3 17 8 6 39 chain 34405 chr19 59128983 + 28607111 28607521 L1PA5 6144 - 0 402 77048 138 7 0 10 1 0 254 chain 77188 chr19 59128983 + 28621536 28622505 LTR5_Hs 974 + 0 974 44868 288 0 1 167 15 14 352 5 12 31 8 6 103 chain 35927 chr19 59128983 + 28626070 28626536 L1PA8 5853 - 3 463 74984 90 1 0 19 2 1 51 16 14 7 0 1 59 2 0 44 1 0 174 chain 530406 chr19 59128983 + 28668491 28674526 L1PA3long 6157 + 0 6156 4139 153 1 2 397 0 1 215 8 136 24 0 1 120 0 2 1500 15 7 2485 0 1 12 7 0 945 2 4 151 chain 29403 chr19 59128983 + 28683827 28684295 MER4A1 472 + 0 462 87055 117 11 10 14 8 6 47 9 11 34 11 3 10 10 11 135 2 4 60 chain 77815 chr19 59128983 + 28695293 28696269 L1PA6 6164 - 2 977 44569 17 1 0 135 20 18 473 13 14 64 0 1 253 chain 87189 chr19 59128983 + 28696269 28697253 L1PA6 6164 + 4193 5181 40695 172 0 4 812 chain 30689 chr19 59128983 + 28702185 28702576 L1PA6 6164 - 2 393 83054 12 0 1 138 14 9 80 0 3 87 0 1 60 chain 18138 chr19 59128983 + 28754408 28754622 L1PA6 6164 - 8 222 132497 214 chain 534848 chr19 59128983 + 28760615 28766635 L1PA3long 6157 + 0 6156 3612 151 0 1 615 12 140 2054 0 3 23 0 1 706 1 2 306 0 3 200 0 1 840 0 1 531 4 0 421 4 5 152 chain 80710 chr19 59128983 + 28769669 28771073 L1PA8 5853 - 0 1095 43302 112 2 1 47 1 0 14 1 0 71 2 0 44 1 0 382 0 1 117 1 0 30 23 25 133 310 3 64 20 22 29 chain 3462 chr19 59128983 + 28774971 28775107 L1P5 443 - 46 185 215945 41 79 82 16 chain 40106 chr19 59128983 + 28801822 28802271 L1PA5 6144 + 5681 6129 69168 4 1 0 444 chain 10794 chr19 59128983 + 28814571 28814715 MER41B 635 - 490 635 157020 18 1 2 125 chain 26715 chr19 59128983 + 28845954 28846337 MER1A 529 + 67 524 97270 16 17 61 215 0 27 70 11 15 47 1 0 6 chain 5435 chr19 59128983 + 28880399 28880596 L1MA7 2200 + 1880 2031 190654 36 121 75 40 chain 6843 chr19 59128983 + 28906102 28906279 L1MA1 4479 - 295 459 178637 12 7 0 12 9 5 4 1 0 9 1 0 35 2 0 19 37 39 29 chain 3020 chr19 59128983 + 28915720 28915752 MER5A1 166 - 36 68 224626 32 chain 240193 chr19 59128983 + 28923172 28926256 HERVH-int 3825 - 849 3825 16760 117 1 0 227 13 87 195 0 4 99 0 1 195 1 2 995 0 1 274 1 0 49 21 21 12 1 0 41 2 39 13 22 1 11 4 0 12 1 0 10 1 0 5 192 0 33 5 0 173 0 1 358 chain 26055 chr19 59128983 + 28926258 28926619 LTR7 482 - 0 482 99807 187 1 32 35 5 6 58 7 96 68 chain 44286 chr19 59128983 + 28929316 28929899 L1PA8 5853 + 5286 5853 63839 64 2 0 18 16 0 152 1 3 41 1 0 23 1 7 15 2 0 70 1 0 63 1 0 16 4 3 92 chain 45127 chr19 59128983 + 28986266 28986786 L1PA5 6144 - 0 517 62900 5 3 0 204 0 1 129 1 0 178 chain 60144 chr19 59128983 + 28986786 28987456 L1PA5 6144 + 4970 5643 52753 56 0 1 267 0 2 347 chain 45033 chr19 59128983 + 29013002 29013553 MER41A 554 + 2 554 63015 223 0 1 328 chain 3255 chr19 59128983 + 29016428 29016485 MER41-int 2638 + 111 170 219910 23 11 13 23 chain 44255 chr19 59128983 + 29019557 29020112 MER41A 554 + 0 551 63872 415 10 6 130 chain 95078 chr19 59128983 + 29029502 29030560 L1PA4 6152 + 5096 6152 38070 350 3 0 371 0 1 334 chain 22560 chr19 59128983 + 29108221 29108481 AluY 311 + 26 287 117757 106 0 1 154 chain 200833 chr19 59128983 + 29114454 29116803 L1PA6 6164 - 1057 3529 19157 72 1 0 140 0 1 127 1 9 788 0 2 13 0 1 151 0 1 607 24 135 425 chain 90535 chr19 59128983 + 29116803 29117863 L1PA6 6164 + 5096 6162 39359 119 0 1 99 5 10 837 chain 10081 chr19 59128983 + 29123982 29124111 MER85 139 - 0 139 160171 39 0 10 90 chain 4217 chr19 59128983 + 29136714 29136767 L1MB7 1623 + 1370 1423 204323 53 chain 250822 chr19 59128983 + 29167898 29170651 L1PA3long 6157 + 3391 6147 16193 1914 0 3 839 chain 48825 chr19 59128983 + 29174454 29174998 L1PA5 6144 - 1511 2053 59608 427 2 0 115 chain 130388 chr19 59128983 + 29174998 29176509 L1PA5 6144 + 4635 6138 27992 86 0 7 36 22 0 533 0 4 693 1 3 105 0 1 35 chain 76051 chr19 59128983 + 29180218 29181187 LTR5_Hs 974 - 0 974 45445 103 20 18 19 8 15 67 8 0 7 0 8 81 1 0 188 0 1 181 0 1 118 1 0 167 chain 3726 chr19 59128983 + 29184755 29184819 L1PB3 3668 - 102 164 211528 32 8 6 24 chain 35727 chr19 59128983 + 29185800 29186274 LTR3A 482 + 0 482 75231 156 7 16 224 12 11 75 chain 33404 chr19 59128983 + 29229823 29230186 L1PA3long 6157 + 5540 5903 78559 363 chain 22836 chr19 59128983 + 29230189 29230439 L1PA3long 6157 + 5907 6157 116418 250 chain 5451 chr19 59128983 + 29231912 29232014 L1MC1 2226 + 1984 2076 190517 10 2 0 53 24 16 13 chain 27341 chr19 59128983 + 29239967 29240309 THE1A 353 - 0 343 95141 34 0 1 16 0 1 4 1 0 187 1 0 42 0 1 57 chain 121415 chr19 59128983 + 29240319 29241874 THE1A-int 1579 - 0 1579 30560 12 1 0 239 0 7 6 5 6 253 1 2 251 0 1 246 0 12 518 1 2 8 1 3 13 chain 15866 chr19 59128983 + 29243930 29244130 L1PA6 6164 + 5950 6151 138752 25 1 2 174 chain 456853 chr19 59128983 + 29247788 29253876 L1PA2 6032 + 10 6031 8517 132 92 116 183 24 24 95 31 32 115 0 7 51 141 13 115 2 1 131 119 110 1062 1 0 68 2 1 777 2 0 111 12 10 364 0 1 29 5 4 94 0 1 137 9 10 736 0 44 165 1 0 150 1 0 280 1 0 390 0 2 460 chain 113174 chr19 59128983 + 29258683 29259974 L1PA3long 6157 - 5 1293 33324 149 0 1 33 0 1 337 12 7 760 chain 40481 chr19 59128983 + 29259974 29260426 L1PA3long 6157 + 4430 4886 68478 74 0 4 378 chain 3652 chr19 59128983 + 29295547 29295588 L1P4 1494 - 867 908 212771 41 chain 231816 chr19 59128983 + 29297093 29299691 L1PA5 6144 + 3538 6135 17211 2273 1 0 324 chain 25137 chr19 59128983 + 29302976 29303275 AluSg7 307 - 0 300 104087 169 7 8 123 chain 4740 chr19 59128983 + 29305476 29305532 MSTD 398 - 343 398 198012 34 1 0 21 chain 5652 chr19 59128983 + 29375911 29375991 MSTB 430 - 342 423 188541 37 5 6 38 chain 4960 chr19 59128983 + 29421918 29421979 U13_ 108 + 10 72 195583 27 0 1 34 chain 157613 chr19 59128983 + 29428181 29430129 L1P2 5180 - 2423 4376 23645 1841 0 1 11 0 4 96 chain 20319 chr19 59128983 + 29430455 29430948 L1PB1 5432 + 5028 5402 126180 67 109 19 24 1 0 8 1 0 10 18 12 51 1 0 14 4 3 46 1 0 14 23 12 18 3 1 5 1 0 14 2 0 24 1 0 21 1 0 11 chain 48853 chr19 59128983 + 29449828 29450453 MER41B 635 + 0 627 59837 128 0 1 297 0 1 29 11 10 45 0 1 115 chain 47552 chr19 59128983 + 29484196 29484780 LTR10C 591 + 0 585 60808 34 2 0 59 0 1 416 0 2 73 chain 19714 chr19 59128983 + 29607734 29608090 THE1C 375 + 0 375 128056 87 47 52 37 0 2 8 22 20 19 4 18 30 0 1 5 1 0 96 chain 12884 chr19 59128983 + 29614519 29614688 THE1B 368 - 185 368 148689 11 1 0 108 5 20 44 chain 113151 chr19 59128983 + 29614696 29616241 THE1B-int 1605 - 8 1577 33334 255 2 5 134 56 56 305 4 0 173 8 2 191 17 44 148 0 2 110 2 1 11 1 4 128 chain 21663 chr19 59128983 + 29616269 29616608 THE1B 368 - 0 368 121530 118 42 52 22 0 4 62 1 2 4 1 0 45 0 15 44 chain 507079 chr19 59128983 + 29623517 29629645 L1PA6 6164 + 0 6162 6389 196 0 1 312 2 1 71 0 1 233 3 0 124 0 25 115 1 2 371 3 1 246 0 2 236 6 1 144 5 14 237 0 1 416 1 6 187 0 1 171 0 1 69 3 0 4 0 1 27 0 1 1283 2 1 635 0 1 336 2 1 332 0 1 43 1 0 311 chain 103485 chr19 59128983 + 29650205 29651650 L1PB2 3958 + 1961 3437 35869 167 5 18 133 13 26 78 0 14 83 27 9 227 0 2 20 0 12 170 63 62 325 2 0 53 0 3 14 5 0 15 1 0 34 0 1 10 chain 4473 chr19 59128983 + 29671283 29671336 L1MEf 1413 + 950 1003 201083 53 chain 39322 chr19 59128983 + 29674171 29674699 MLT2A2 560 - 6 560 70296 33 6 11 97 3 14 41 0 4 47 10 12 115 1 0 24 0 5 151 chain 3090 chr19 59128983 + 29675637 29675673 MLT2A1 477 + 119 155 223094 36 chain 86778 chr19 59128983 + 29688749 29689793 MER11C 1089 - 16 1089 40859 298 8 0 37 0 1 36 0 19 10 1 0 261 0 6 88 0 4 62 0 1 156 0 7 87 chain 64431 chr19 59128983 + 29701278 29701992 L1PA3long 6157 - 8 724 50826 139 0 1 103 0 1 472 chain 20144 chr19 59128983 + 29701992 29702219 L1PA3long 6157 + 5202 5429 126697 12 0 1 4 1 0 210 chain 544308 chr19 59128983 + 29716688 29722710 L1PA3long 6157 + 0 6156 2169 153 0 1 419 0 4 201 1 129 126 0 1 668 0 1 4449 1 0 4 chain 503445 chr19 59128983 + 29740566 29746531 L1PA6 6164 - 15 6164 6645 129 6 7 205 0 1 423 1 0 75 0 1 545 0 8 387 1 9 287 1 0 544 14 14 321 10 11 663 0 1 89 0 16 87 0 1 1364 0 1 18 0 22 84 0 108 161 1 0 40 7 9 101 0 1 78 5 18 81 0 2 237 chain 24163 chr19 59128983 + 29752342 29752646 AluSp 311 + 10 307 109410 32 0 1 10 13 5 249 chain 9277 chr19 59128983 + 29758798 29758975 L1PA17 2846 - 155 326 164177 42 1 0 17 1 0 21 39 36 40 1 0 15 chain 30726 chr19 59128983 + 29825584 29826043 L1PA8 5853 - 0 424 82991 93 1 0 19 2 1 45 15 13 38 0 3 31 2 0 45 2 1 83 31 0 52 chain 4426 chr19 59128983 + 29827867 29827923 MIRb 242 + 75 131 201630 56 chain 531110 chr19 59128983 + 29839256 29845368 L1PA4 6152 + 0 6141 4068 1034 1 0 410 5 6 266 1 0 657 0 1 10 0 23 764 2 1 5 1 0 73 0 4 1033 0 2 1011 0 1 737 0 1 102 chain 20877 chr19 59128983 + 29845875 29846244 THE1D 372 + 0 372 124373 98 1 2 62 0 1 13 65 69 24 1 0 7 1 0 65 2 1 30 chain 27229 chr19 59128983 + 29893902 29894185 AluYb8 318 + 19 302 95502 283 chain 23801 chr19 59128983 + 29914670 29915027 THE1B 368 + 0 367 111472 47 7 8 117 1 0 26 36 46 123 chain 3420 chr19 59128983 + 29931743 29931779 LTR12C 1709 + 796 832 216769 36 chain 36567 chr19 59128983 + 29943358 29943977 L1PB1 5432 + 4808 5384 74148 4 0 1 49 21 0 61 0 1 81 1 0 72 0 9 17 13 11 22 1 0 11 1 0 10 16 10 53 2 1 16 1 0 31 1 0 12 1 0 16 3 0 6 19 10 15 2 0 5 1 0 14 2 0 24 1 0 14 chain 545832 chr19 59128983 + 29950197 29956095 L1PA2 6032 + 1 5897 1969 2714 0 1 4 1 0 748 2 0 5 4 2 2126 0 2 294 chain 27324 chr19 59128983 + 29972976 29973364 THE1D-int 1627 - 5 403 95195 4 0 1 96 1 7 8 6 0 98 18 27 157 chain 84643 chr19 59128983 + 30048622 30050520 L1PA7 6471 + 5325 6463 41663 222 0 1 73 0 3 52 835 69 392 0 1 138 0 1 28 14 14 128 1 0 4 0 1 11 chain 31070 chr19 59128983 + 30079144 30079585 L1PA16 3655 - 182 623 82395 29 22 26 40 6 5 83 2 0 86 1 0 172 chain 23889 chr19 59128983 + 30080612 30080948 THE1C 375 - 39 375 110966 105 4 7 26 17 12 5 0 2 179 chain 48371 chr19 59128983 + 30116372 30117316 PABL_A 660 + 0 650 60201 101 0 1 89 0 3 16 1 0 219 300 0 73 7 11 18 4 5 6 1 0 9 6 5 94 chain 13905 chr19 59128983 + 30131886 30132050 MER50 708 - 495 659 144899 164 chain 18077 chr19 59128983 + 30134651 30135904 MER41B 635 + 11 635 132653 31 7 5 46 1 0 33 5 6 42 968 336 23 0 5 97 chain 4880 chr19 59128983 + 30160786 30160840 L1MB2 1706 - 24 78 196481 54 chain 10084 chr19 59128983 + 30182648 30182808 THE1B 368 - 207 368 160161 40 17 15 64 0 5 24 2 0 13 chain 4371 chr19 59128983 + 30224589 30224645 L1MB4 1306 - 642 698 202300 56 chain 30671 chr19 59128983 + 30284684 30285191 L1PB1 5432 + 4906 5396 83091 196 1 0 15 3 0 21 1 0 7 2 1 10 2 0 3 2 0 8 2 0 64 6 5 45 1 0 15 3 0 6 15 6 19 21 32 11 1 0 21 1 0 5 chain 4639 chr19 59128983 + 30295416 30295537 L1MB3 1562 - 7 129 199198 24 9 8 17 27 31 7 1 0 30 1 0 5 chain 12435 chr19 59128983 + 30307628 30307766 L1PA4 6152 - 18 156 150514 138 chain 134437 chr19 59128983 + 30389240 30392602 SVA_F 1814 - 0 1479 27125 10 2 0 591 52 0 176 1795 0 75 48 14 17 0 1 50 1 0 545 chain 7480 chr19 59128983 + 30390071 30390240 SVA_F 1814 - 601 768 121436 32 6 4 131 chain 6267 chr19 59128983 + 30390297 30390622 SVA_F 1814 - 698 987 86274 154 50 15 10 1 0 56 0 1 25 1 0 28 chain 1372 chr19 59128983 + 30390469 30390500 SVA_F 1814 - 771 803 121436 4 0 1 27 chain 3823 chr19 59128983 + 30390622 30390678 SVA_F 1814 - 747 803 106009 56 chain 8950 chr19 59128983 + 30390752 30391161 SVA_F 1814 - 698 1034 80902 153 0 15 56 1 0 4 0 1 32 1 0 28 98 11 36 chain 671 chr19 59128983 + 30391027 30391056 SVA_F 1814 - 747 776 115923 29 chain 6330 chr19 59128983 + 30391059 30391125 SVA_F 1814 - 652 718 142943 66 chain 12920 chr19 59128983 + 30391161 30391831 SVA_F 1814 - 1114 1194 86274 28 601 11 41 chain 2014 chr19 59128983 + 30391189 30391210 SVA_F 1814 - 782 803 142943 21 chain 4412 chr19 59128983 + 30391382 30391463 SVA_F 1814 - 698 779 132072 81 chain 6094 chr19 59128983 + 30391463 30391527 SVA_F 1814 - 652 716 130809 64 chain 15822 chr19 59128983 + 30391527 30391735 SVA_F 1814 - 540 698 120894 147 50 0 11 chain 2396 chr19 59128983 + 30391674 30391718 SVA_F 1814 - 878 922 132072 44 chain 624 chr19 59128983 + 30391735 30391762 SVA_F 1814 - 776 803 115923 27 chain 2130 chr19 59128983 + 30391762 30391790 SVA_F 1814 - 725 753 120894 28 chain 3801 chr19 59128983 + 30391941 30391989 SVA_F 1814 - 916 964 152380 6 1 0 4 0 2 31 1 0 5 chain 22228 chr19 59128983 + 30397857 30398109 L1PA7 6471 + 6216 6466 119214 243 2 0 7 chain 23120 chr19 59128983 + 30398649 30398923 AluSp 311 - 15 290 115036 102 0 1 172 chain 66436 chr19 59128983 + 30406637 30407390 L1PA5 6144 - 6 760 49902 35 0 1 718 chain 36690 chr19 59128983 + 30408245 30408707 LTR10F 562 + 0 562 73971 144 0 87 69 1 12 43 0 1 148 0 1 57 chain 119449 chr19 59128983 + 30439464 30440861 SVA_C 1631 - 216 1625 31248 194 0 2 215 0 1 8 0 50 169 41 0 746 1 0 5 0 1 18 chain 4808 chr19 59128983 + 30443977 30444061 Looper 901 - 294 379 197264 59 13 14 12 chain 5244 chr19 59128983 + 30498088 30498216 MER5A1 166 - 36 166 192585 48 52 54 28 chain 21071 chr19 59128983 + 30502724 30502958 L1PA5 6144 + 5903 6137 123654 234 chain 21504 chr19 59128983 + 30531810 30532445 THE1A 353 + 0 333 122130 15 2 0 32 0 1 46 1 0 13 32 37 90 304 0 62 1 0 37 chain 120759 chr19 59128983 + 30532465 30534009 THE1A-int 1579 + 0 1574 30776 85 0 10 143 0 3 39 3 2 50 0 1 318 0 1 285 14 31 244 1 0 225 1 0 36 0 1 100 chain 23365 chr19 59128983 + 30534014 30534363 THE1A 353 + 0 353 113839 15 2 0 33 9 10 23 7 12 47 3 1 151 4 6 55 chain 14833 chr19 59128983 + 30590793 30591047 Tigger3b 1229 + 882 1150 141834 34 7 22 35 45 44 133 chain 30121 chr19 59128983 + 30604890 30605406 L1PB1 5432 - 12 494 84424 16 1 0 13 1 0 21 1 0 20 6 4 14 8 5 28 11 0 3 2 0 16 1 0 36 12 11 12 2 1 53 2 0 9 4 0 12 1 0 12 1 0 20 1 0 6 7 6 164 chain 22533 chr19 59128983 + 30605406 30605770 L1PB1 5432 + 4584 4944 117882 43 11 9 63 1 0 96 64 63 86 chain 26576 chr19 59128983 + 30620474 30620757 AluYa5 310 + 28 310 97742 104 1 0 178 chain 140615 chr19 59128983 + 30632063 30633553 L1HS 6032 - 2 1492 26052 1490 chain 119957 chr19 59128983 + 30633560 30634841 L1HS 6032 + 3243 4524 31073 1281 chain 33049 chr19 59128983 + 30667320 30667895 MER4B 649 + 0 633 79142 28 1 0 55 0 1 73 8 51 11 1 0 77 11 14 31 0 15 46 87 86 76 2 1 68 chain 520516 chr19 59128983 + 30675567 30681665 L1PA5 6144 - 1 6144 5104 853 0 3 665 1 0 947 1 0 457 5 6 53 0 1 306 0 1 1682 9 0 135 1 0 4 5 6 154 0 1 504 7 29 67 0 1 90 7 19 24 5 19 116 chain 193497 chr19 59128983 + 30681715 30683876 L1PA4 6152 - 9 2170 19734 2161 chain 70495 chr19 59128983 + 30683883 30684690 L1PA4 6152 + 3146 3955 48168 741 0 2 66 chain 4468 chr19 59128983 + 30695428 30695515 UCON28b 102 + 1 68 201140 22 23 3 42 chain 16566 chr19 59128983 + 30742508 30742862 L1PB1 5432 - 8 325 136744 20 1 0 13 1 0 21 1 0 21 27 22 19 16 6 6 3 0 16 5 4 40 1 0 15 2 1 52 2 0 9 5 1 9 1 0 15 2 1 19 5 0 7 chain 70979 chr19 59128983 + 30781592 30782468 L1PA8 5853 - 0 869 47937 93 1 0 19 2 1 50 1 0 11 1 0 71 2 0 25 0 1 20 1 0 140 0 1 411 2 0 26 chain 6739 chr19 59128983 + 30785997 30786105 MER5A1 166 - 53 165 179409 18 14 18 76 chain 106334 chr19 59128983 + 30889297 30890579 L1PA7 6471 - 2 1252 35173 10 2 0 295 27 0 549 0 1 361 4 0 34 chain 5222 chr19 59128983 + 30946644 30946715 L1MA4 2864 - 55 124 192808 43 2 0 26 chain 24398 chr19 59128983 + 30971325 30971621 L1PA8 5853 + 5563 5853 108087 46 2 0 73 1 0 7 1 0 51 2 1 22 1 0 90 chain 10924 chr19 59128983 + 30992696 30992825 MER85 139 - 0 139 156514 40 0 10 89 chain 16711 chr19 59128983 + 31073488 31073856 THE1B 368 - 0 368 136371 46 17 16 57 4 0 6 73 77 26 32 33 107 chain 12406 chr19 59128983 + 31096471 31096662 L1PB2 3958 - 122 309 150610 58 1 0 13 11 7 17 0 2 58 1 0 32 chain 28795 chr19 59128983 + 31105849 31106151 AluYg6 310 - 8 310 89923 302 chain 5163 chr19 59128983 + 31108060 31108135 L1PB1 5432 - 10 82 193415 18 1 0 12 2 1 21 1 0 20 chain 22479 chr19 59128983 + 31115625 31116008 THE1D 372 + 0 372 118114 15 7 6 30 16 7 117 1 0 18 1 0 29 3 0 11 1 7 29 1 0 53 19 18 32 chain 91696 chr19 59128983 + 31135279 31136327 L1PA4 6152 - 0 1052 39059 6 0 5 380 8 7 654 chain 70980 chr19 59128983 + 31171161 31171933 L1PA3long 6157 - 0 772 47936 772 chain 3973 chr19 59128983 + 31200923 31200971 MER58B 340 + 136 184 207795 48 chain 2816 chr19 59128983 + 31211506 31211548 L1MB5 1630 - 11 51 228506 8 1 0 10 1 0 22 chain 60240 chr19 59128983 + 31261062 31261716 L1PA3long 6157 + 5503 6157 52712 654 chain 20210 chr19 59128983 + 31282643 31282999 THE1B 368 + 0 362 126502 108 14 15 53 63 68 26 0 1 35 7 6 50 chain 44510 chr19 59128983 + 31297090 31297717 MER41B 635 + 0 635 63569 64 0 2 59 1 2 42 4 5 172 5 6 40 0 1 68 12 11 34 1 3 47 9 10 69 chain 33523 chr19 59128983 + 31306121 31306538 L1PA4 6152 + 5758 6143 78361 191 32 0 194 chain 2985 chr19 59128983 + 31315946 31316029 HAL1-2a_MD 234 - 121 228 225349 11 6 0 12 4 46 23 13 1 14 chain 21250 chr19 59128983 + 31327700 31327959 AluSp 311 + 10 287 123021 42 4 22 213 chain 10282 chr19 59128983 + 31442249 31442400 Tigger3c 601 - 31 181 159228 12 18 17 121 chain 32582 chr19 59128983 + 31496563 31496921 L1PA4 6152 + 5785 6143 79887 358 chain 61343 chr19 59128983 + 31522191 31522894 L1PA6 6164 + 5458 6162 52176 40 0 1 663 chain 3805 chr19 59128983 + 31526999 31527067 L1ME1 1623 + 1093 1169 210305 33 7 15 28 chain 11824 chr19 59128983 + 31550075 31550304 L1MA4A 3247 + 2894 3096 152925 18 24 10 17 25 15 14 3 0 128 chain 8153 chr19 59128983 + 31572113 31572210 MSTA 426 - 329 426 170205 97 chain 9984 chr19 59128983 + 31576523 31576677 Tigger3b 1229 - 379 535 160658 45 0 1 28 13 14 68 chain 16286 chr19 59128983 + 31619900 31620262 THE1B 368 - 0 368 137517 56 16 15 54 128 135 108 chain 6433 chr19 59128983 + 31620262 31620342 MLT1A0 366 + 63 143 181759 80 chain 23148 chr19 59128983 + 31677149 31677520 THE1C 375 + 0 363 114899 108 1 0 16 0 20 9 20 0 7 1 0 43 10 13 26 7 0 17 1 0 91 1 0 13 chain 5996 chr19 59128983 + 31704321 31704450 L1MC1 2226 + 2057 2168 185281 26 4 0 24 2 0 15 25 14 16 1 0 16 chain 5090 chr19 59128983 + 31711663 31711721 MLT1J2 417 - 309 367 194189 58 chain 8585 chr19 59128983 + 31727530 31727644 L1MA9 1812 + 976 1089 167813 12 1 0 101 chain 14037 chr19 59128983 + 31738791 31739148 THE1B 368 - 3 368 144431 32 34 33 57 61 67 59 46 47 32 1 2 6 0 1 29 chain 21798 chr19 59128983 + 31758837 31759181 THE1B 368 + 0 348 121028 169 1 0 18 10 13 9 1 5 12 34 32 90 chain 23679 chr19 59128983 + 31812738 31813030 L1PA7 6471 - 1 293 112158 292 chain 29234 chr19 59128983 + 31885176 31885526 THE1A 353 + 0 349 87887 111 1 0 238 chain 43842 chr19 59128983 + 31902437 31902963 MER41A 554 - 0 527 64397 263 0 1 263 chain 20732 chr19 59128983 + 31927788 31928145 THE1C 375 + 0 348 124845 107 56 50 21 0 3 14 19 13 140 chain 19500 chr19 59128983 + 31966308 31967918 L1PB1 5432 - 12 393 128655 16 1 0 11 2 0 23 1 0 24 2 0 14 8 5 17 16 8 6 3 0 15 1 0 45 18 16 33 0 1 16 3 1 11 4 0 11 1 0 13 1 0 20 1212 13 62 chain 103787 chr19 59128983 + 31975557 31977016 THE1B-int 1605 - 5 1547 35777 123 6 7 692 42 43 66 2 10 140 16 10 48 20 45 227 18 72 59 chain 25374 chr19 59128983 + 31977072 31977413 THE1B 368 - 0 368 102813 166 0 2 24 1 0 112 8 34 30 chain 4432 chr19 59128983 + 31977428 31977481 MSTB-int 1649 - 1596 1649 201568 53 chain 12429 chr19 59128983 + 31999789 31999983 L1PA8 5853 - 1 190 150534 92 1 0 19 2 1 39 10 8 14 1 0 16 chain 26315 chr19 59128983 + 32000000 32000313 L1PA8A 6298 - 163 476 98767 313 chain 13245 chr19 59128983 + 32023694 32023904 L1PA8 5853 - 0 206 147304 93 1 0 19 2 1 35 18 17 9 2 1 31 chain 26699 chr19 59128983 + 32041176 32041550 THE1C 375 - 0 375 97327 87 9 8 5 0 1 79 22 23 172 chain 40417 chr19 59128983 + 32047765 32048469 L1PB1 5432 - 12 709 68709 16 1 0 13 1 0 11 10 20 14 2 0 14 8 5 16 22 10 5 1 0 15 1 0 44 1 0 70 2 0 8 10 6 7 1 0 32 5 0 7 9 7 45 4 5 32 6 4 43 0 18 41 0 1 91 0 1 96 chain 29410 chr19 59128983 + 32057209 32057606 L1PA8 5853 + 5439 5853 87015 125 1 0 44 2 0 54 0 31 8 12 0 42 1 0 17 2 1 21 1 4 67 chain 4473 chr19 59128983 + 32060319 32060373 L1PA6 6164 - 4 59 201084 22 0 1 32 chain 40656 chr19 59128983 + 32060376 32060835 L1PA4 6152 + 5391 5850 68357 459 chain 3894 chr19 59128983 + 32077438 32077483 MADE1 96 - 1 46 208949 45 chain 9741 chr19 59128983 + 32078142 32078396 MER50 708 - 350 566 161885 20 9 14 24 10 22 48 70 14 44 10 11 19 chain 7952 chr19 59128983 + 32078852 32078975 MER50 708 - 7 138 171317 59 18 25 19 0 1 27 chain 10689 chr19 59128983 + 32089461 32089719 L1PB1 5432 - 13 249 157457 15 1 0 13 1 0 21 1 0 24 2 0 14 13 10 23 18 7 11 29 28 16 1 0 16 2 1 37 chain 32460 chr19 59128983 + 32105995 32106413 L1PA5 6144 - 3 514 80093 6 4 0 235 1 2 142 16 112 14 chain 5148 chr19 59128983 + 32106413 32106469 L1PA5 6144 + 5644 5700 175062 56 chain 12712 chr19 59128983 + 32143841 32144299 L1PA8 5853 - 0 450 57598 20 1 0 70 1 0 22 2 1 52 1 0 9 2 1 70 2 0 44 1 0 161 chain 107069 chr19 59128983 + 32144303 32145442 L1HS 6032 + 4891 6030 34952 1139 chain 7050 chr19 59128983 + 32145462 32145716 L1PA8 5853 - 458 709 57598 17 16 0 91 0 13 130 chain 24307 chr19 59128983 + 32159104 32159399 AluSq2 311 + 0 291 108622 29 4 0 262 chain 6733 chr19 59128983 + 32213347 32213467 L1PB2 3958 + 3721 3838 179447 21 17 15 17 2 1 63 chain 6397 chr19 59128983 + 32217459 32217537 HERVL-int 5654 + 0 78 182056 78 chain 3187 chr19 59128983 + 32220871 32220921 MLT2B2 565 + 507 551 221191 12 6 0 32 chain 2629 chr19 59128983 + 32237290 32237318 L1MA9 1812 + 1677 1705 231284 28 chain 6119 chr19 59128983 + 32288056 32288359 LTR16C 481 - 58 389 184290 41 9 11 26 90 118 24 90 88 23 chain 42603 chr19 59128983 + 32294747 32295347 LTR71B 605 + 0 605 65895 134 4 10 24 14 16 161 6 1 149 18 16 84 0 4 6 chain 15796 chr19 59128983 + 32302033 32302372 L1PB1 5432 - 10 317 138965 4 1 0 14 1 0 13 1 0 21 1 0 24 2 0 15 1 0 4 2 0 19 24 12 16 7 6 38 2 1 14 2 1 50 18 12 12 1 0 12 1 0 19 chain 3883 chr19 59128983 + 32303202 32303251 MER4B 649 - 602 649 209127 22 2 0 25 chain 64114 chr19 59128983 + 32325955 32327040 L1MA2 4263 + 2998 4114 50959 107 46 43 15 4 5 118 1 32 51 22 7 188 6 5 15 5 2 15 1 27 17 33 32 109 2 1 15 4 8 100 0 4 39 9 12 93 7 0 11 4 0 7 2 0 29 1 0 9 chain 4320 chr19 59128983 + 32332779 32332836 L1PB2 3958 - 640 695 202970 11 2 0 44 chain 44214 chr19 59128983 + 32408214 32408760 MER41A 554 - 2 554 63928 30 3 2 34 0 1 57 0 1 194 1 6 227 chain 26413 chr19 59128983 + 32410838 32411197 THE1C 375 + 0 375 98361 275 16 33 41 1 0 26 chain 23069 chr19 59128983 + 32431091 32431347 AluY 311 + 39 296 115300 93 0 1 163 chain 24994 chr19 59128983 + 32469198 32469498 AluSp 311 - 0 300 104826 300 chain 11327 chr19 59128983 + 32472200 32472420 MER30 238 - 0 238 154976 26 0 1 12 3 0 73 2 0 7 4 12 33 9 31 17 22 14 12 chain 3911 chr19 59128983 + 32486716 32486757 tRNA-Gln-CAG 43 + 2 43 208699 41 chain 43318 chr19 59128983 + 32540947 32541502 MER41A 554 + 0 554 65016 165 9 8 381 chain 28562 chr19 59128983 + 32552541 32552922 THE1C 375 + 0 375 90909 140 1 5 120 10 1 84 1 0 25 chain 12142 chr19 59128983 + 32553715 32553858 L1PA8 5853 - 474 617 151641 143 chain 24361 chr19 59128983 + 32554139 32554472 L1PA8 5853 + 5527 5853 108312 35 1 0 41 10 8 70 1 0 7 1 0 52 2 1 21 1 0 91 chain 37594 chr19 59128983 + 32590273 32590822 L1PA8 5853 - 0 548 72692 92 2 1 15 8 7 42 4 9 8 1 0 70 2 0 38 8 7 259 chain 7443 chr19 59128983 + 32591202 32591290 LTR54 533 - 445 533 174492 88 chain 21017 chr19 59128983 + 32601983 32602238 AluY 311 + 47 303 123854 79 0 1 176 chain 3582 chr19 59128983 + 32603012 32603056 MER3 215 - 34 78 213951 44 chain 22163 chr19 59128983 + 32627274 32627610 L1PA8 5853 + 5523 5853 119530 12 0 1 28 1 0 31 0 1 6 9 6 70 12 10 52 2 1 19 1 0 93 chain 41112 chr19 59128983 + 32638122 32638814 L1PB1 5432 - 10 681 67759 4 1 0 14 1 0 12 1 0 22 1 0 22 52 46 6 2 0 14 1 0 45 1 0 18 1 0 51 2 0 9 2 0 3 2 0 8 7 6 4 1 0 20 20 18 84 0 2 208 0 2 53 chain 36572 chr19 59128983 + 32676522 32676984 L1PA8 5853 + 5394 5853 74137 170 1 0 44 2 0 72 1 0 8 1 0 52 2 1 19 2 1 48 0 4 40 chain 5053 chr19 59128983 + 32680836 32680920 MER96B 391 + 227 310 194606 36 4 5 18 2 0 24 chain 61969 chr19 59128983 + 32683278 32684072 L1PA7 6471 - 1 799 51912 113 1 0 223 9 12 257 0 1 161 0 1 30 chain 48453 chr19 59128983 + 32684072 32684684 L1PA7 6471 + 5043 5655 60024 62 0 1 515 1 0 34 chain 7224 chr19 59128983 + 32709058 32709165 L1MA8 2339 + 1853 1957 175920 67 9 6 31 chain 44304 chr19 59128983 + 32736889 32737469 Tigger1 2417 + 345 931 63819 202 10 14 24 1 2 159 0 1 184 chain 41563 chr19 59128983 + 32750705 32751252 MER41A 554 - 0 554 67203 81 0 5 252 4 5 16 11 12 183 chain 46719 chr19 59128983 + 32755018 32755566 MER41A 554 + 0 554 61439 419 0 1 48 0 5 81 chain 36758 chr19 59128983 + 32774983 32775647 L1PB1 5432 + 4824 5420 73864 279 39 11 24 2 1 17 2 0 3 2 0 8 2 0 53 2 1 16 5 0 21 7 2 21 1 0 15 3 0 6 19 9 16 8 5 14 5 3 10 0 8 8 10 1 15 1 0 13 1 0 16 chain 4879 chr19 59128983 + 32777921 32777991 L1MB3 1562 + 1433 1502 196494 5 1 0 30 1 0 13 0 1 20 chain 13527 chr19 59128983 + 32785004 32785269 L1PB1 5432 - 12 253 146256 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 45 31 40 1 0 16 2 1 41 chain 43359 chr19 59128983 + 32799258 32799804 MER41A 554 - 0 553 64981 11 0 1 69 6 12 121 0 1 15 1 0 323 chain 28506 chr19 59128983 + 32808795 32809106 AluYf4 310 + 0 310 91167 132 1 0 178 chain 9870 chr19 59128983 + 32822534 32822697 MSTA 426 - 227 426 161232 22 14 43 5 0 2 14 5 10 103 chain 28052 chr19 59128983 + 32832311 32832614 AluYa5 310 - 2 310 92819 115 0 6 61 1 0 126 chain 70641 chr19 59128983 + 32855272 32856430 L1PB1 5432 - 19 1143 48088 9 1 0 13 1 0 21 1 0 24 2 0 12 10 7 19 20 8 4 1 0 11 0 1 4 2 1 42 1 0 16 2 1 53 2 0 9 16 11 9 1 0 21 3 0 140 0 20 59 0 2 53 41 42 83 31 3 82 4 0 11 4 5 80 0 2 38 27 33 175 chain 76861 chr19 59128983 + 32867511 32868522 LTR13 1007 - 0 1007 45051 31 3 1 159 0 1 21 1 0 83 27 28 54 2 1 242 4 5 289 14 13 11 2 0 68 chain 49241 chr19 59128983 + 32888052 32888702 PABL_A 660 - 0 660 59559 71 11 13 62 7 9 202 0 3 25 0 1 88 0 1 82 0 1 102 chain 16671 chr19 59128983 + 32904358 32904547 L1PA3long 6157 - 0 190 136483 142 0 1 47 chain 3405 chr19 59128983 + 32914468 32914512 MADE1 96 + 31 90 216993 14 0 15 30 chain 4943 chr19 59128983 + 32968188 32968257 MADE1 96 - 3 88 195768 34 1 17 34 chain 26484 chr19 59128983 + 32968675 32969031 THE1B 368 - 0 368 98100 64 2 0 135 1 0 101 11 26 42 chain 4324 chr19 59128983 + 32980221 32980399 MLT1E1 597 - 421 597 202920 25 112 110 41 chain 78268 chr19 59128983 + 32987983 32988944 LTR13A 966 - 0 966 44387 64 6 5 196 0 2 302 1 4 264 0 1 128 chain 56559 chr19 59128983 + 33003265 33003945 L1PA7 6471 - 3 680 54819 9 2 0 146 1 0 66 0 1 115 2 1 339 chain 20467 chr19 59128983 + 33004231 33004487 AluY 311 + 40 298 125710 92 1 2 147 0 1 16 chain 6306 chr19 59128983 + 33031573 33031677 MER54B 801 - 586 687 182747 12 19 18 14 2 0 57 chain 4199 chr19 59128983 + 33051740 33051861 LTR46 455 - 102 216 204547 30 60 53 31 chain 139058 chr19 59128983 + 33062313 33064020 LTR12C 1709 + 2 1709 26286 379 19 22 83 1 2 349 1 0 89 36 32 153 1 0 5 3 1 94 13 17 481 chain 2979 chr19 59128983 + 33063234 33063270 LTR12C 1709 + 1004 1040 157858 36 chain 9453 chr19 59128983 + 33069890 33070015 L1MB3 1562 + 781 909 163301 98 0 8 8 5 0 14 chain 546374 chr19 59128983 + 33078429 33084501 L1PA3long 6157 - 8 6157 1897 1785 0 4 665 1 0 178 0 2 770 0 5 25 1 6 179 1 0 135 0 1 74 0 1 754 0 2 99 5 10 5 0 3 254 0 3 134 0 1 115 0 4 155 0 3 57 0 7 304 0 27 53 0 3 30 1 0 163 0 4 129 chain 22954 chr19 59128983 + 33100952 33101220 AluSc 308 + 18 285 115831 22 1 0 245 chain 4712 chr19 59128983 + 33111829 33111923 L1MA10 1535 + 1416 1495 198374 29 10 7 20 12 0 23 chain 8607 chr19 59128983 + 33145562 33145665 7SLRNA 320 - 1 104 167694 103 chain 29031 chr19 59128983 + 33176560 33176864 AluYb8 318 + 0 304 88849 304 chain 11681 chr19 59128983 + 33177734 33177909 LTR51 675 - 78 257 153555 6 0 1 64 6 10 16 1 0 8 0 1 21 0 1 44 2 0 7 chain 55929 chr19 59128983 + 33184011 33184760 LTR12 884 - 0 884 55168 107 0 2 294 0 2 9 16 15 10 0 1 44 0 22 81 0 2 33 0 66 65 0 41 65 1 0 9 1 2 14 chain 310799 chr19 59128983 + 33186553 33190595 HERV9-int 5642 - 817 5635 12971 730 11 15 128 7 942 265 0 2 147 1 4 128 4 0 529 14 5 346 9 4 305 0 1 167 163 0 85 0 3 74 0 5 6 5 0 61 2 1 5 0 1 69 2 1 322 1 3 30 1 4 271 0 4 68 25 26 61 chain 5540 chr19 59128983 + 33189347 33189408 HERV9-int 5642 - 4535 4596 189665 61 chain 62716 chr19 59128983 + 33190630 33191428 LTR12 884 - 0 884 51582 150 4 8 122 8 10 218 2 0 38 1 2 17 1 42 159 0 41 52 1 0 25 chain 24482 chr19 59128983 + 33199067 33199347 AluY 311 + 16 297 107638 110 0 1 170 chain 18565 chr19 59128983 + 33216554 33216829 L1PA10 4194 - 33 358 131320 11 1 0 34 4 1 127 2 6 49 5 50 29 0 5 13 chain 18046 chr19 59128983 + 33245575 33245791 AluSp 311 - 5 220 132742 129 1 0 86 chain 94981 chr19 59128983 + 33255724 33256795 L1PA4 6152 + 5070 6141 38104 747 1 2 164 2 1 157 chain 481268 chr19 59128983 + 33272876 33278974 L1PA7 6471 - 2 6466 7684 161 0 1 686 2 1 96 0 4 837 3 5 192 0 1 36 33 2 124 0 3 306 0 2 174 3 2 23 0 4 128 0 2 182 1 0 174 0 25 55 4 0 6 0 4 378 2 1 38 1 0 22 0 36 25 2 1 100 1 0 147 1 0 34 0 1 287 0 3 41 0 2 105 0 1 40 1 2 824 0 9 68 1 22 177 1 76 57 5 15 82 0 1 71 41 238 41 0 2 75 14 16 190 chain 2920 chr19 59128983 + 33333737 33333768 MADE1 96 - 65 96 226687 31 chain 547270 chr19 59128983 + 33336943 33343088 L1PA4 6152 + 6 6151 1798 570 1 0 154 1 0 106 17 0 180 0 1 87 1 0 1282 0 4 73 1 0 783 0 4 1101 0 4 283 0 5 661 0 4 728 5 4 111 chain 30860 chr19 59128983 + 33346138 33346849 MER83 447 + 0 403 82752 62 1 0 3 1 0 115 306 0 223 chain 19465 chr19 59128983 + 33353761 33353998 7SK 245 - 8 245 128764 237 chain 20711 chr19 59128983 + 33381031 33381310 AluSc8 310 + 1 289 124926 51 8 15 50 1 0 4 1 2 10 0 2 154 chain 27105 chr19 59128983 + 33403666 33403973 AluYf4 310 + 0 302 95926 288 2 0 8 3 0 6 chain 6195 chr19 59128983 + 33404437 33404509 MER81 114 + 22 94 183616 72 chain 24763 chr19 59128983 + 33404545 33404844 AluSq10 312 - 13 312 106099 299 chain 110163 chr19 59128983 + 33527362 33528763 LTR12C 1709 + 0 1709 34168 291 0 1 46 0 43 79 9 7 74 4 0 109 0 278 144 0 2 38 1 0 4 6 4 104 0 4 242 14 0 151 12 11 6 0 4 67 chain 19721 chr19 59128983 + 33565245 33565516 AluSc8 310 + 0 271 128039 44 5 4 82 2 5 80 3 1 55 chain 3790 chr19 59128983 + 33569369 33569411 LTR24 460 - 418 460 210520 42 chain 25139 chr19 59128983 + 33570899 33571206 AluSp 311 + 0 301 104072 125 6 0 176 chain 25489 chr19 59128983 + 33587858 33588149 AluSp 311 - 19 311 102274 150 0 1 141 chain 23484 chr19 59128983 + 33606400 33606699 AluSp 311 - 12 310 113197 146 0 3 8 3 0 99 1 0 42 chain 24258 chr19 59128983 + 33611617 33611901 AluY 311 + 4 288 108901 284 chain 37960 chr19 59128983 + 33645126 33645621 L1PA8 5853 - 0 507 72192 93 1 0 19 2 1 52 1 0 8 1 0 69 3 1 42 0 18 204 chain 25656 chr19 59128983 + 33653967 33654252 AluY 311 + 10 296 101463 122 0 1 163 chain 36648 chr19 59128983 + 33655653 33656131 MER1A 529 - 0 495 74027 61 2 4 60 0 6 304 5 14 46 chain 4311 chr19 59128983 + 33667962 33668007 tRNA-Thr-ACY 58 + 0 45 203084 45 chain 8018 chr19 59128983 + 33727325 33727417 MER30B 195 + 83 177 170946 11 0 2 81 chain 14831 chr19 59128983 + 33799633 33799907 THE1D 372 + 92 372 141839 20 6 4 19 40 58 7 12 0 25 1 0 89 0 3 55 chain 2288 chr19 59128983 + 33809836 33809882 L1MEf 1413 + 1176 1224 235505 18 10 12 18 chain 4232 chr19 59128983 + 33867463 33867527 MER5A 189 - 122 189 204142 17 2 5 45 chain 22797 chr19 59128983 + 33971427 33971705 AluSc 308 + 7 285 116585 278 chain 48908 chr19 59128983 + 33982352 33982940 LTR10C 591 - 1 591 59803 78 1 3 509 chain 26293 chr19 59128983 + 33993292 33993821 MER51A 677 + 0 661 98855 27 10 16 63 0 1 34 0 1 34 38 21 40 23 0 4 0 163 74 59 61 48 9 1 19 0 7 47 chain 8850 chr19 59128983 + 34023343 34023454 MER41B 635 + 504 615 166375 111 chain 20058 chr19 59128983 + 34046620 34046990 THE1D 372 - 3 372 126945 23 1 0 4 0 1 43 0 1 73 1 0 24 29 34 58 61 55 53 chain 51711 chr19 59128983 + 34052503 34053174 L1PA8 5853 - 53 733 57811 39 2 1 19 2 1 30 2 0 22 2 0 9 1 0 70 2 0 45 1 0 171 1 0 238 0 20 15 chain 17757 chr19 59128983 + 34053234 34053471 MER39B 650 - 387 626 133549 83 13 15 141 chain 44068 chr19 59128983 + 34057688 34058236 MER41A 554 - 1 554 64136 124 1 2 84 1 2 5 0 3 333 chain 43877 chr19 59128983 + 34060291 34060834 MER41A 554 + 0 554 64364 180 0 10 279 1 6 38 4 0 41 chain 36098 chr19 59128983 + 34077550 34078156 MER4A1 472 + 0 472 74768 101 49 0 3 86 0 21 1 2 345 chain 12663 chr19 59128983 + 34080635 34080785 Tigger1 2417 + 1246 1397 149596 127 0 1 23 chain 45324 chr19 59128983 + 34096771 34097325 MER41A 554 + 0 554 62689 290 0 1 117 1 0 19 0 1 114 1 0 12 chain 8307 chr19 59128983 + 34098685 34098848 L1MC1 2226 + 1890 2047 169356 27 1 0 27 37 34 15 2 0 54 chain 41493 chr19 59128983 + 34127409 34128263 MER41A 554 - 0 554 67288 69 15 16 31 311 11 30 6 5 392 chain 22212 chr19 59128983 + 34155194 34155460 L1PA3long 6157 - 1 260 119294 154 8 1 104 chain 6644 chr19 59128983 + 34187340 34187422 MER1B 344 + 152 234 180136 82 chain 8674 chr19 59128983 + 34187463 34187633 MER1A 529 + 374 529 167340 53 56 41 61 chain 6844 chr19 59128983 + 34187633 34187732 L1P5 443 - 185 285 178629 64 6 7 29 chain 23367 chr19 59128983 + 34205496 34205844 THE1B 368 + 0 356 113830 168 1 0 16 51 60 112 chain 6204 chr19 59128983 + 34221451 34221524 MER41A 554 - 0 73 183556 73 chain 40986 chr19 59128983 + 34221547 34222082 MLT2A2 560 - 0 560 67927 143 0 11 161 2 3 33 3 16 193 chain 38133 chr19 59128983 + 34222082 34222620 MER41B 635 - 96 635 71941 28 1 2 43 25 24 247 1 0 5 0 1 59 4 5 125 chain 40237 chr19 59128983 + 34224870 34225389 MER41A 554 + 0 544 68966 207 9 11 167 6 27 17 1 2 10 0 1 102 chain 27590 chr19 59128983 + 34234198 34234505 AluYf4 310 - 4 310 94378 103 1 0 203 chain 4232 chr19 59128983 + 34255978 34256025 L1PB1 5432 - 329 376 204139 47 chain 24943 chr19 59128983 + 34273505 34273828 THE1C 375 - 50 375 105090 140 1 2 30 4 5 148 chain 27603 chr19 59128983 + 34278048 34278462 MSTA 426 + 0 426 94337 28 0 1 72 0 1 28 5 6 65 2 0 5 3 0 6 0 4 80 1 21 23 6 1 12 9 4 69 chain 4884 chr19 59128983 + 34321493 34321559 L1MC4 1079 - 264 329 196433 48 1 0 17 chain 23970 chr19 59128983 + 34330591 34330868 AluSp 311 + 8 285 110508 277 chain 17106 chr19 59128983 + 34347070 34347430 L1PB1 5432 + 5088 5419 135294 15 1 2 10 3 0 23 1 0 6 1 0 12 2 0 3 2 0 9 2 0 52 18 16 44 1 0 16 47 36 14 2 0 24 1 0 22 1 0 12 1 0 15 chain 6324 chr19 59128983 + 34373958 34374029 BC200 147 - 42 113 182604 71 chain 41666 chr19 59128983 + 34428409 34429119 L1PB1 5432 + 4744 5427 67074 60 2 0 183 9 10 106 13 11 20 1 0 12 1 0 12 5 1 9 10 8 46 0 2 5 1 7 39 36 22 30 7 4 15 2 0 24 1 0 21 1 0 13 1 0 14 1 0 5 1 0 4 chain 23348 chr19 59128983 + 34442744 34443244 MLT2A2 560 - 0 555 113935 39 23 1 14 62 26 19 0 5 41 18 127 56 64 63 164 chain 30706 chr19 59128983 + 34459887 34460307 L1MA4 2864 - 219 629 83025 21 2 0 125 3 2 163 3 0 13 4 0 86 chain 43729 chr19 59128983 + 34467955 34468499 MER41A 554 + 0 554 64533 87 5 6 102 0 8 182 0 1 168 chain 11724 chr19 59128983 + 34490265 34490400 MER85 139 - 0 135 153368 135 chain 3749 chr19 59128983 + 34509606 34509649 LTR87 602 - 70 113 211147 43 chain 42770 chr19 59128983 + 34525760 34526284 MER41A 554 - 8 543 65690 118 0 1 230 0 10 176 chain 26553 chr19 59128983 + 34537942 34538242 AluYk4 311 + 0 299 97831 19 2 1 279 chain 26323 chr19 59128983 + 34559720 34560013 AluYf4 310 - 13 310 98728 89 0 1 134 0 3 70 chain 166090 chr19 59128983 + 34569389 34571461 SVA_F 1814 - 0 1789 22507 601 101 0 247 200 18 923 chain 8596 chr19 59128983 + 34569990 34570091 SVA_F 1814 - 777 890 126095 26 1 0 10 2 0 39 0 15 23 chain 1593 chr19 59128983 + 34570338 34570373 SVA_F 1814 - 672 707 129113 35 chain 2015 chr19 59128983 + 34570373 34570396 SVA_F 1814 - 898 921 197134 23 chain 829 chr19 59128983 + 34570487 34570538 SVA_F 1814 - 624 675 167752 51 chain 25115 chr19 59128983 + 34577676 34578041 THE1B 368 + 0 368 104204 169 6 5 27 0 1 12 0 4 6 26 25 119 chain 23022 chr19 59128983 + 34584633 34585026 MSTA 426 - 0 426 115522 108 10 18 53 24 23 39 0 1 7 14 18 27 14 36 22 1 0 74 chain 21599 chr19 59128983 + 34591291 34592023 Tigger3 1187 + 2 528 121773 21 374 164 15 1 0 73 15 12 58 1 2 24 1 2 22 9 17 8 2 0 108 chain 23077 chr19 59128983 + 34614748 34615028 AluSp 311 + 11 292 115260 9 0 1 271 chain 153673 chr19 59128983 + 34622818 34624603 SVA_D 2077 + 59 2061 24130 18 0 17 282 0 4 306 0 40 177 2 0 9 2 0 31 45 5 71 0 51 32 11 90 27 0 1 138 0 49 514 0 20 120 chain 3872 chr19 59128983 + 34623645 34623690 SVA_D 2077 + 1257 1302 81110 45 chain 21274 chr19 59128983 + 34689240 34689525 AluSp 311 + 1 286 122947 46 3 6 84 8 5 144 chain 5465 chr19 59128983 + 34713032 34713126 MIR 256 - 96 192 190354 43 14 16 37 chain 5240 chr19 59128983 + 34733389 34733451 MER41A 554 - 93 155 192623 62 chain 25369 chr19 59128983 + 34733632 34733925 AluSp 311 - 9 302 102833 293 chain 14996 chr19 59128983 + 34777888 34778060 AluY 311 + 127 301 141329 148 0 2 24 chain 5392 chr19 59128983 + 34783184 34783346 L1MB7 1623 - 109 244 191065 16 1 0 5 4 0 14 1 0 9 1 0 14 57 37 40 chain 27047 chr19 59128983 + 34813928 34814235 AluYf5 307 - 0 307 96124 307 chain 28107 chr19 59128983 + 34835213 34835513 AluYa5 310 + 0 299 92623 132 1 0 167 chain 26941 chr19 59128983 + 34896048 34896350 AluSp 311 - 8 311 96478 39 0 1 263 chain 9420 chr19 59128983 + 34898392 34898515 L1MA7 2200 - 253 378 163456 48 0 2 75 chain 25371 chr19 59128983 + 34939970 34940271 AluSc 308 - 6 308 102826 272 0 1 29 chain 28950 chr19 59128983 + 34949178 34949493 AluYf4 310 + 0 310 89219 118 5 0 192 chain 30446 chr19 59128983 + 34970412 34970879 MER1A 529 + 0 529 83538 30 11 14 36 14 55 14 9 32 262 33 28 58 chain 27688 chr19 59128983 + 34974822 34975129 AluSc5 308 - 1 308 94086 307 chain 116891 chr19 59128983 + 35000469 35002015 THE1A-int 1579 - 5 1579 32164 99 0 2 675 0 1 91 0 1 83 7 20 38 0 1 4 1 0 74 8 11 49 14 18 242 13 15 133 3 5 12 chain 29872 chr19 59128983 + 35005000 35005399 LTR7 482 + 0 482 85196 101 13 63 60 5 37 44 0 1 176 chain 228238 chr19 59128983 + 35005401 35008518 HERVH-int 3825 + 0 3213 17400 76 2 0 187 0 5 47 26 25 70 11 10 37 13 18 10 2 0 30 0 2 5 0 3 5 134 227 21 1 0 357 12 5 86 15 0 205 9 0 348 0 1 171 0 4 121 0 10 322 0 1 5 5 4 178 0 1 203 11 0 365 0 21 27 chain 24843 chr19 59128983 + 35008630 35008914 MER9a1 513 + 229 513 105665 284 chain 5965 chr19 59128983 + 35025233 35025479 L1MA8 2339 - 74 311 185546 9 1 0 23 87 88 17 56 47 53 chain 6088 chr19 59128983 + 35040794 35040991 L1MCb 1641 - 311 498 184501 20 111 101 66 chain 30061 chr19 59128983 + 35043709 35044136 LTR6B 557 - 89 550 84626 72 3 0 37 0 1 198 6 1 17 18 6 61 1 54 14 chain 3489 chr19 59128983 + 35046323 35046555 HERVS71-int 4705 - 1557 1752 215539 19 0 4 6 169 129 21 1 0 16 chain 537259 chr19 59128983 + 35053095 35059580 L1PA7 6471 - 2 6471 3281 17 1 0 94 2 0 18 0 1 83 6 0 151 1 0 469 0 2 956 0 8 18 1 2 89 0 1 743 0 4 290 1 0 24 2 0 294 4 0 378 0 2 176 38 15 368 0 1 47 3 4 179 1 0 474 1 0 344 6 10 799 1 2 406 chain 89260 chr19 59128983 + 35060613 35061716 MER11A 1151 + 0 1151 39905 108 0 2 120 1 0 64 0 11 83 0 1 54 0 1 115 1 0 84 0 1 29 0 2 177 0 1 9 3 0 6 0 35 182 1 0 66 chain 9291 chr19 59128983 + 35065039 35065177 MER51A 677 - 0 127 164109 57 10 0 5 1 0 65 chain 11127 chr19 59128983 + 35073421 35073596 MER30 238 - 15 205 155707 70 15 41 7 11 0 72 chain 44331 chr19 59128983 + 35086070 35086623 LTR14 556 - 0 556 63787 83 1 4 6 1 0 18 0 1 6 2 0 382 0 2 54 chain 190546 chr19 59128983 + 35106657 35108757 L1PA3long 6157 - 55 2167 19995 83 0 7 704 0 4 543 0 1 770 chain 23830 chr19 59128983 + 35108759 35109057 L1P1 4361 - 4061 4360 111309 150 0 15 5 14 0 129 chain 41829 chr19 59128983 + 35111081 35111568 L1PA5 6144 + 5632 6131 66852 340 1 13 146 chain 531970 chr19 59128983 + 35116039 35122171 L1PA4 6152 + 1 6143 3963 947 0 11 1356 8 0 235 5 1 492 0 1 120 2 1 85 0 4 113 0 1 321 3 1 632 0 2 314 0 5 111 0 1 1388 chain 10785 chr19 59128983 + 35122179 35122339 MER30 238 + 68 238 157052 43 4 15 21 2 1 90 chain 3348 chr19 59128983 + 35132685 35132731 MER4D1 891 + 289 339 218089 7 0 5 14 1 0 24 chain 7115 chr19 59128983 + 35132781 35132872 LTR29 598 + 466 557 176645 91 chain 339805 chr19 59128983 + 35148158 35152184 L1PA6 6164 + 2149 6161 11903 41 0 2 141 0 1 248 9 14 591 6 4 109 1 0 391 39 5 6 3 0 90 1 0 411 0 1 61 0 1 480 0 5 705 0 10 27 0 1 514 0 1 152 chain 98412 chr19 59128983 + 35158916 35160136 LTR12C 1709 + 0 1709 37189 297 0 1 40 0 43 81 7 6 19 0 6 306 3 319 106 11 4 248 0 131 102 chain 13035 chr19 59128983 + 35166576 35166765 LTR12_ 688 - 148 326 148104 82 21 10 86 chain 100355 chr19 59128983 + 35187283 35191077 L1P3 4156 + 1 3526 14389 241 5 19 18 1 0 4 17 18 19 2 1 80 0 4 240 66 85 18 0 1 56 12 7 95 47 31 272 8 12 13 18 19 15 6 4 121 14 17 115 0 51 586 8 13 172 0 2 27 0 1 136 1 4 15 7 8 85 5 4 256 0 4 177 3 0 206 355 1 252 chain 540745 chr19 59128983 + 35191287 35197399 L1PA4 6152 - 0 6150 2698 150 0 1 703 0 4 1340 2 0 1552 0 1 1382 0 16 96 1 2 394 0 3 351 4 18 137 chain 16373 chr19 59128983 + 35197418 35198037 L1P3 4156 + 3527 4139 14389 298 5 0 172 4 5 105 2 0 7 2 1 24 chain 9311 chr19 59128983 + 35199662 35199885 L1PB1 5432 + 5221 5422 164006 15 1 0 45 1 0 4 78 61 24 1 0 21 1 0 13 1 0 18 chain 18968 chr19 59128983 + 35211428 35211634 L1PA4 6152 - 0 206 130187 206 chain 31291 chr19 59128983 + 35267553 35267970 MER66B 489 - 15 449 82002 97 3 20 18 8 1 28 0 7 263 chain 3390 chr19 59128983 + 35269526 35269762 MER63C 923 + 424 662 217290 39 134 137 14 24 28 6 5 0 14 chain 63088 chr19 59128983 + 35287840 35288532 L1PA4 6152 - 122 814 51407 692 chain 50470 chr19 59128983 + 35288535 35289132 MER11D 897 - 299 897 58666 316 0 1 281 chain 3667 chr19 59128983 + 35299468 35299514 MER30B 195 - 134 180 212444 46 chain 185144 chr19 59128983 + 35348811 35351081 L1P2 5180 + 2 2846 20487 86 0 507 172 1 0 20 1 0 5 1 0 39 0 27 36 1 2 37 0 25 595 0 1 497 0 1 112 4 19 136 1 0 140 2 0 140 0 1 79 2 4 163 chain 531343 chr19 59128983 + 35351081 35357110 L1PA4 6152 + 3 6143 4037 30 13 0 118 5 6 423 1 0 118 7 0 73 1 129 944 0 4 3453 1 0 842 chain 11060 chr19 59128983 + 35357117 35357251 MER11A 1151 - 1009 1151 155963 55 0 8 79 chain 34720 chr19 59128983 + 35361449 35361905 LTR15 485 + 0 461 76593 107 0 1 17 4 0 25 0 2 29 0 4 98 0 4 149 1 0 6 2 0 14 0 1 4 chain 23592 chr19 59128983 + 35366986 35367304 AluY 311 + 10 307 112621 123 28 12 153 5 0 9 chain 52331 chr19 59128983 + 35408163 35408754 LTR10C 591 - 0 591 57411 591 chain 74650 chr19 59128983 + 35411081 35412022 LTR5_Hs 974 + 0 947 46186 459 0 4 163 10 9 21 0 1 17 3 5 268 chain 9263 chr19 59128983 + 35412022 35412137 MER11C 1089 + 973 1089 164248 19 0 1 96 chain 135679 chr19 59128983 + 35412334 35413909 SVA_D 2077 - 0 2019 26898 18 2 0 620 0 403 43 1 0 32 22 65 131 0 40 207 39 0 460 chain 6535 chr19 59128983 + 35419744 35419824 MER44A 345 + 191 271 180967 80 chain 10407 chr19 59128983 + 35425684 35425833 L1PA8 5853 + 5706 5853 158654 30 6 5 19 1 0 93 chain 19126 chr19 59128983 + 35426720 35427069 THE1B 368 - 12 368 129753 19 0 1 24 7 6 63 77 83 43 5 6 111 chain 26108 chr19 59128983 + 35438929 35439229 AluSp 311 + 11 311 99582 300 chain 70307 chr19 59128983 + 35455928 35457011 MER11B 1079 + 0 1079 48260 358 0 5 92 20 19 22 41 30 68 0 1 104 0 7 14 1 0 18 48 40 15 6 8 16 10 11 51 0 1 37 0 1 128 5 4 29 chain 14956 chr19 59128983 + 35457026 35457210 LTR8 732 + 0 189 141459 47 0 2 120 0 3 17 chain 43701 chr19 59128983 + 35460964 35461476 MER9a3 513 - 0 513 64566 236 7 8 269 chain 3645 chr19 59128983 + 35500490 35500532 MIRb 242 + 68 110 212879 42 chain 24547 chr19 59128983 + 35558671 35559023 LTR7 482 - 13 482 107268 36 13 14 110 0 1 16 0 31 38 1 2 10 1 11 49 0 50 55 0 23 23 chain 41684 chr19 59128983 + 35559793 35560356 MER41A 554 - 7 554 67047 26 1 5 159 21 0 168 5 6 183 chain 30064 chr19 59128983 + 35563495 35563864 PABL_A 660 + 0 581 84614 102 0 1 144 0 211 123 chain 24309 chr19 59128983 + 35567235 35567535 AluSp 311 + 0 302 108606 83 0 4 198 2 0 17 chain 24497 chr19 59128983 + 35580791 35581083 AluSp 311 + 0 288 107556 11 0 1 9 6 0 119 0 1 147 chain 39504 chr19 59128983 + 35583313 35583770 LTR2 463 - 0 463 70014 229 0 3 167 0 3 61 chain 25360 chr19 59128983 + 35593959 35594256 AluYf5 307 - 9 307 102888 30 5 6 262 chain 14085 chr19 59128983 + 35653276 35653590 MLT1A 405 - 23 346 144277 63 1 2 23 112 119 15 0 2 85 1 0 14 chain 6659 chr19 59128983 + 35655844 35655932 Tigger4a 237 - 0 99 180013 50 0 11 38 chain 7940 chr19 59128983 + 35676129 35676235 L1MA5 2750 + 2495 2600 171377 69 1 0 36 chain 25461 chr19 59128983 + 35692847 35693192 THE1C 375 + 0 345 102407 70 2 1 133 13 14 127 chain 43919 chr19 59128983 + 35695575 35696122 MER41A 554 - 0 554 64312 50 5 6 17 8 13 37 0 1 430 chain 41149 chr19 59128983 + 35705848 35706370 MER41A 554 + 0 552 67718 42 0 1 14 0 15 21 0 1 111 0 12 213 0 1 121 chain 27974 chr19 59128983 + 35742746 35743036 AluYa5 310 - 20 310 93096 290 chain 28563 chr19 59128983 + 35806873 35807355 MER1A 529 + 0 529 90904 12 30 29 35 23 63 100 14 21 184 23 24 61 chain 45537 chr19 59128983 + 35813354 35813943 LTR10C 591 - 0 591 62471 73 6 8 224 0 2 253 2 0 31 chain 2593 chr19 59128983 + 35843946 35844055 Tigger2b_Pri 1066 - 1 114 231791 18 48 52 7 1 0 7 4 5 24 chain 21242 chr19 59128983 + 35855501 35855791 L1PA8 5853 - 0 284 123047 93 1 0 19 2 1 47 2 1 11 2 1 72 2 0 39 chain 43799 chr19 59128983 + 35873357 35873844 LTR2C 499 + 6 494 64451 434 0 1 53 chain 3462 chr19 59128983 + 35876973 35877011 LOR1-int 1871 - 457 495 215975 38 chain 58816 chr19 59128983 + 35880684 35881745 MER4E1 777 - 8 777 53513 219 5 9 77 0 1 23 0 5 187 2 1 134 4 5 15 301 0 34 5 4 30 3 0 5 0 3 17 chain 14796 chr19 59128983 + 35891017 35891253 MER49 923 + 646 884 141945 37 8 9 69 2 1 55 3 4 13 6 7 43 chain 38573 chr19 59128983 + 35955046 35955548 LTR10D 510 - 5 510 71337 70 0 2 14 2 0 176 9 11 136 2 0 12 0 2 47 0 1 34 chain 55822 chr19 59128983 + 35961716 35962761 MER4E1 777 + 0 770 55236 23 0 2 168 1 13 40 0 1 191 0 5 97 2 6 52 311 0 34 0 1 67 2 1 18 0 11 15 1 0 10 0 2 13 chain 24054 chr19 59128983 + 35962310 35962601 AluY 311 + 11 297 110019 115 5 0 171 chain 17052 chr19 59128983 + 36057516 36057741 MER30 238 + 0 238 135453 103 8 21 114 chain 4042 chr19 59128983 + 36062936 36062986 THE1B 368 + 0 51 206769 11 0 1 39 chain 11715 chr19 59128983 + 36063206 36063339 LTR5_Hs 974 - 840 974 153405 5 0 1 128 chain 204545 chr19 59128983 + 36064323 36067434 HERVK-int 6823 - 409 4494 18882 28 2 0 6 220 144 5 1 0 8 1 0 3 2 0 14 35 28 24 1 0 5 3 1 76 1 0 4 1 0 7 1 0 4 3 0 43 7 6 125 1 0 29 7 6 100 1 0 23 1 0 197 1 0 14 14 0 239 0 3 213 0 17 712 336 1407 338 0 1 255 chain 24487 chr19 59128983 + 36068983 36069324 L1PB1 5432 - 245 576 107620 20 2 0 8 5 1 12 1 0 12 1 0 19 3 0 9 7 5 214 0 3 28 chain 9818 chr19 59128983 + 36069324 36069442 L1PB1 5432 + 4734 4852 160654 118 chain 25548 chr19 59128983 + 36071229 36071516 AluY 311 + 4 290 101998 119 1 0 167 chain 22866 chr19 59128983 + 36072281 36072530 AluY 311 + 12 261 116250 249 chain 24223 chr19 59128983 + 36085530 36085814 AluSc5 308 + 1 291 109073 75 0 6 209 chain 9869 chr19 59128983 + 36092907 36093023 MER21B 843 - 104 220 161241 116 chain 4295 chr19 59128983 + 36095412 36095460 MER31A 484 - 436 484 203309 48 chain 44278 chr19 59128983 + 36098018 36098520 MER9a1 513 + 0 506 63849 310 0 4 192 chain 11761 chr19 59128983 + 36119054 36119207 LTR7B 505 + 353 505 153214 88 14 13 51 chain 23620 chr19 59128983 + 36152677 36152959 AluSc5 308 - 16 298 112474 7 2 0 18 0 2 255 chain 8251 chr19 59128983 + 36175238 36175384 MER30 238 + 67 236 169677 39 8 28 12 7 13 40 4 1 36 chain 22695 chr19 59128983 + 36175384 36175655 AluY 311 + 36 307 117098 271 chain 104299 chr19 59128983 + 36181221 36182525 LTR12C 1709 - 1 1709 35669 171 1 99 210 11 4 106 4 2 4 1 0 104 0 278 216 0 1 42 13 7 83 0 43 104 3 2 138 1 2 92 chain 24689 chr19 59128983 + 36199708 36200020 AluSp 311 - 0 310 106503 160 3 0 6 0 3 10 2 0 131 chain 24322 chr19 59128983 + 36255277 36255578 AluSp 311 + 2 305 108535 264 10 12 27 chain 16290 chr19 59128983 + 36350133 36350343 MER30 238 + 0 238 137505 107 4 25 33 0 7 66 chain 24643 chr19 59128983 + 36368113 36368414 AluSq2 311 + 5 308 106766 128 0 1 121 0 1 52 chain 33789 chr19 59128983 + 36372107 36372558 MER4A1 472 + 0 472 77957 124 3 5 5 1 0 96 3 24 39 1 0 179 chain 6008 chr19 59128983 + 36375634 36375751 MLT1A0 366 - 235 353 185171 51 32 33 34 chain 25935 chr19 59128983 + 36410922 36411214 AluY 311 + 3 296 100275 129 0 1 163 chain 7506 chr19 59128983 + 36419091 36419195 LTR26E 604 - 436 556 174125 23 1 16 56 0 1 24 chain 5276 chr19 59128983 + 36447038 36447121 L1MB8 1703 - 143 235 192245 35 7 11 29 0 5 12 chain 3252 chr19 59128983 + 36461207 36461244 PABL_B 668 + 440 477 219979 37 chain 7115 chr19 59128983 + 36461745 36461833 PABL_B 668 - 467 555 176651 88 chain 4832 chr19 59128983 + 36511547 36511609 MER3 215 - 76 138 196995 62 chain 3142 chr19 59128983 + 36538009 36538044 tRNA-Cys-TGY 72 - 37 72 222164 35 chain 6613 chr19 59128983 + 36540047 36540121 HY5 76 + 0 74 180352 74 chain 3841 chr19 59128983 + 36542557 36542604 LTR65 659 - 0 47 209767 47 chain 143446 chr19 59128983 + 36559266 36560956 SVA_C 1631 - 7 1631 25569 47 0 1 628 47 0 38 3 0 59 4 0 626 14 7 197 10 4 17 chain 1030 chr19 59128983 + 36559941 36559980 SVA_C 1631 - 637 676 207548 39 chain 24801 chr19 59128983 + 36571317 36571656 AluSp 311 - 1 311 105888 120 33 1 95 0 3 91 chain 3384 chr19 59128983 + 36614113 36614149 L1MB7 1623 - 200 236 217390 36 chain 25627 chr19 59128983 + 36617353 36617657 AluY 311 + 10 310 101592 115 5 1 184 chain 22203 chr19 59128983 + 36617978 36618248 AluSc 308 + 9 295 119335 47 0 17 189 1 0 33 chain 28508 chr19 59128983 + 36646376 36646809 LTR7Y 441 - 0 441 91153 197 70 84 52 20 14 94 chain 292669 chr19 59128983 + 36648018 36651479 HERVH-int 3825 - 0 3825 13849 225 0 2 260 8 218 39 9 11 1045 0 10 299 6 33 16 0 12 213 0 1 21 0 3 544 1 0 92 0 3 12 0 2 7 1 2 58 1 93 24 1 0 10 1 0 10 0 3 23 5 0 348 0 4 182 chain 28190 chr19 59128983 + 36651493 36651925 LTR7Y 441 - 0 441 92343 178 0 3 16 69 84 52 14 5 103 chain 24977 chr19 59128983 + 36655425 36655715 AluY 311 + 5 295 104916 13 1 0 114 0 1 162 chain 25262 chr19 59128983 + 36704299 36704582 AluSq10 312 - 24 307 103405 283 chain 22215 chr19 59128983 + 36707260 36707559 AluSq 315 + 0 287 119283 120 17 0 13 0 2 126 0 3 23 chain 82349 chr19 59128983 + 36724258 36725234 LTR5_Hs 974 - 3 974 42609 123 9 0 16 10 9 9 1 0 99 0 2 250 1 5 458 chain 4801 chr19 59128983 + 36731115 36731174 MER2 342 + 147 206 197344 59 chain 63150 chr19 59128983 + 36738045 36738826 LTR5_Hs 974 - 23 974 51381 18 2 163 114 1 0 188 0 1 177 0 1 161 5 13 115 chain 21641 chr19 59128983 + 36750409 36750828 LTR7B 505 - 6 499 121611 45 31 30 23 12 13 26 1 0 43 0 1 7 1 89 24 47 23 57 1 11 101 chain 282885 chr19 59128983 + 36752087 36755692 HERVH-int 3825 - 0 3825 14479 140 0 2 83 0 2 260 9 220 37 17 18 519 2 0 517 0 13 298 7 33 241 0 1 90 1 2 297 2 1 178 1 0 94 2 1 48 2 1 5 0 1 26 1 93 24 122 0 10 1 0 36 5 0 340 1 0 12 8 13 169 chain 16520 chr19 59128983 + 36807429 36807822 MSTD 398 - 2 398 136856 9 1 2 44 88 100 21 29 14 10 6 1 52 7 17 73 1 0 4 0 1 48 chain 45006 chr19 59128983 + 36815774 36816323 LTR6B 557 - 1 549 63053 107 1 2 46 1 0 134 8 7 252 chain 170004 chr19 59128983 + 36816480 36819949 HERVS71-int 4705 - 557 4058 22051 6 2 0 18 37 32 45 37 33 7 1 0 44 1 0 21 1 0 15 2 0 25 9 6 17 1 0 22 4 1 29 17 14 20 10 6 21 6 5 6 2 0 4 1 0 7 1 0 29 1 0 6 14 9 15 1 0 6 2 0 13 2 1 34 1 0 16 2 0 55 5 2 33 1 0 29 1 0 6 25 20 56 2 0 18 1 0 16 7 5 10 18 14 26 2 1 5 1 0 9 15 9 20 15 9 12 2 1 5 3 0 8 7 6 9 1 0 16 8 5 15 2 0 7 1 0 18 1 0 41 0 3 5 10 2 17 1 0 5 103 77 19 2 1 9 2 0 20 1 0 23 14 5 14 1 0 9 1 0 10 2 0 30 0 4 6 1 0 25 3 1 9 2 0 7 1 0 6 27 18 12 9 6 16 14 11 13 1 0 11 19 13 14 161 449 12 6 5 101 8 7 158 1 0 128 27 32 214 1 0 16 1 0 343 1 0 281 11 0 138 1 0 15 5 1 21 128 67 16 2 1 5 1 0 17 1 0 5 7 4 12 4 0 5 1 0 8 chain 47572 chr19 59128983 + 36821386 36821945 LTR6B 557 - 0 557 60790 160 1 0 130 1 0 267 chain 68725 chr19 59128983 + 36823070 36824038 LTR5_Hs 974 - 0 974 48932 191 7 7 61 0 2 28 15 16 9 1 2 10 2 0 5 0 2 179 0 4 44 15 0 210 29 38 154 0 4 8 chain 29177 chr19 59128983 + 36897971 36898277 AluYa5 310 - 4 310 88166 306 chain 2865 chr19 59128983 + 36911127 36911162 MER58B 340 + 296 331 227602 35 chain 26389 chr19 59128983 + 36920183 36921235 MER4A1 472 + 0 471 98457 11 3 5 129 1 2 40 350 84 47 1 0 4 0 1 93 318 0 55 chain 27103 chr19 59128983 + 36929392 36929702 AluY 311 + 2 307 95933 203 5 0 102 chain 55167 chr19 59128983 + 36933395 36934950 L1MA3 4352 - 802 1690 55604 145 10 12 10 1 0 5 0 5 21 0 6 40 7 8 45 3 0 46 24 20 38 752 66 49 1 4 16 0 2 270 0 8 72 chain 23904 chr19 59128983 + 36946668 36946957 AluY 311 + 8 299 110886 101 0 1 22 0 1 166 chain 3180 chr19 59128983 + 36957263 36957298 MER2B 336 - 63 98 221350 35 chain 22763 chr19 59128983 + 36957693 36957983 AluY 311 + 0 297 116761 41 11 16 223 0 2 15 chain 11834 chr19 59128983 + 36975078 36975291 MER57A1 433 - 214 423 152889 13 0 1 70 0 2 10 23 41 7 25 0 65 chain 145898 chr19 59128983 + 36981364 36983052 SVA_D 2077 + 30 2069 25189 189 14 7 164 0 3 149 0 80 140 37 0 149 0 87 38 0 2 177 0 223 631 chain 68515 chr19 59128983 + 36983520 36984512 LTR13 1007 - 0 1007 49032 31 3 1 62 0 5 17 1 0 174 10 23 7 1 0 13 0 1 44 3 2 150 3 0 7 1 4 76 8 9 50 6 7 47 0 1 171 34 32 73 chain 9552 chr19 59128983 + 36999486 36999611 MER50B 698 - 68 196 162822 35 0 4 47 1 0 42 chain 19775 chr19 59128983 + 37015419 37015632 SVA_E 1901 - 2 216 127893 207 0 1 6 chain 28834 chr19 59128983 + 37046190 37046497 AluYb9 318 - 14 318 89750 186 3 0 118 chain 3323 chr19 59128983 + 37072327 37072411 L1MB3 1562 + 1143 1226 218515 24 36 35 24 chain 9317 chr19 59128983 + 37079691 37079842 MER21A 919 + 492 645 163976 11 16 17 77 5 6 42 chain 24222 chr19 59128983 + 37082350 37082638 AluY 311 + 11 294 109077 109 1 0 37 4 0 137 chain 3921 chr19 59128983 + 37125836 37125887 L1MA4 2864 - 65 117 208538 31 0 1 20 chain 32873 chr19 59128983 + 37127444 37127992 LTR14 556 - 0 556 79415 110 1 2 19 7 8 64 2 1 20 109 60 10 0 56 206 chain 6608 chr19 59128983 + 37145178 37145265 MLT1C 463 - 2 88 180395 23 1 0 63 chain 27354 chr19 59128983 + 37146898 37147186 AluYd8 298 - 10 298 95100 288 chain 19136 chr19 59128983 + 37158162 37158382 AluSp 311 + 0 260 129720 23 1 26 16 0 15 180 chain 27698 chr19 59128983 + 37158546 37158849 AluYf4 310 - 5 310 94053 98 0 1 176 0 1 29 chain 557794 chr19 59128983 + 37188836 37194968 L1PA3long 6157 - 8 6142 525 835 0 4 1873 0 1 892 2 0 336 0 2 258 1 0 1212 2 0 721 chain 25719 chr19 59128983 + 37220831 37221132 AluY 311 + 0 310 101220 60 0 8 64 0 1 177 chain 9566 chr19 59128983 + 37226776 37226897 L1MA2 4263 + 2185 2306 162754 121 chain 75673 chr19 59128983 + 37226931 37227797 MER11D 897 + 1 897 45674 280 0 1 216 6 8 41 0 4 42 1 24 280 chain 22626 chr19 59128983 + 37234820 37235094 AluSp 311 + 20 296 117446 71 0 3 181 1 0 21 chain 4589 chr19 59128983 + 37236376 37236429 AluSp 311 + 80 132 199755 43 1 0 9 chain 14909 chr19 59128983 + 37236430 37236609 AluSp 311 + 132 311 141607 179 chain 3873 chr19 59128983 + 37237276 37237321 Tigger1 2417 + 288 333 209266 45 chain 20686 chr19 59128983 + 37238306 37238553 AluY 311 + 57 298 125011 68 6 0 173 chain 3843 chr19 59128983 + 37262416 37262482 LTR25 836 - 293 419 209740 31 12 72 23 chain 6999 chr19 59128983 + 37267839 37267923 AluJb 308 + 181 265 177464 84 chain 23540 chr19 59128983 + 37269075 37269356 AluSc5 308 - 17 298 112904 281 chain 29039 chr19 59128983 + 37278590 37279023 L1P4 1494 - 187 617 88810 54 26 24 123 12 11 218 chain 28567 chr19 59128983 + 37284333 37284632 AluYf4 310 + 0 299 90886 299 chain 11957 chr19 59128983 + 37287514 37287658 AluSp 311 - 30 174 152373 144 chain 7653 chr19 59128983 + 37301575 37301726 L1MDa 1598 - 384 528 173202 25 12 14 64 12 0 7 9 12 22 chain 6740 chr19 59128983 + 37301808 37301908 MER20 218 + 40 144 179394 26 1 0 16 4 9 53 chain 44243 chr19 59128983 + 37317793 37318550 LTR66 600 - 0 600 63892 37 0 4 54 0 32 16 0 1 27 0 3 17 213 16 393 chain 4138 chr19 59128983 + 37318099 37318142 LTR66 600 - 220 263 205386 43 chain 21648 chr19 59128983 + 37321770 37322041 AluSc8 310 + 11 286 121579 121 0 3 124 4 5 22 chain 45313 chr19 59128983 + 37327008 37327917 LTR71B 605 + 0 605 62704 134 14 13 127 0 1 79 316 0 127 0 2 11 0 4 9 1 2 69 0 5 22 chain 22440 chr19 59128983 + 37337178 37337476 AluSc8 310 + 0 295 118297 46 20 12 73 0 4 63 1 2 95 chain 7248 chr19 59128983 + 37339571 37339686 LTR9B 643 - 84 192 175771 75 19 12 21 chain 7212 chr19 59128983 + 37349145 37349231 HY3 101 - 16 101 175986 70 1 0 15 chain 28396 chr19 59128983 + 37377607 37377915 AluYk12 309 + 0 301 91601 118 7 0 183 chain 23969 chr19 59128983 + 37469884 37470176 AluSp 311 - 11 303 110516 171 5 4 6 0 1 110 chain 3854 chr19 59128983 + 37495621 37495693 MER58A 224 - 145 216 209581 30 16 15 26 chain 74854 chr19 59128983 + 37497060 37498022 LTR5_Hs 974 + 0 974 46089 155 0 2 10 1 0 300 0 1 100 0 1 7 1 0 80 1 0 163 8 15 19 20 18 20 0 6 77 chain 3065 chr19 59128983 + 37510781 37510813 LTR19A 502 + 0 32 223668 32 chain 19650 chr19 59128983 + 37536840 37537074 THE1A 353 - 120 353 128250 123 1 0 110 chain 504893 chr19 59128983 + 37539633 37545405 L1PA4 6152 - 13 6149 6544 142 0 1 426 0 1 474 0 1 738 0 2 291 0 1 45 7 0 334 0 1 305 0 1 453 0 358 251 0 1 1002 1 0 4 1 2 61 0 1 150 0 1 560 0 1 250 0 1 277 chain 35253 chr19 59128983 + 37554111 37554610 LTR15 485 + 0 485 75859 108 1 0 41 0 2 127 13 17 46 16 0 76 14 16 6 5 0 46 chain 7110 chr19 59128983 + 37561795 37561960 MER58A 224 + 8 190 176687 21 45 64 21 11 9 67 chain 40464 chr19 59128983 + 37567286 37567748 L1PA5 6144 - 8 471 68647 139 0 1 323 chain 3616 chr19 59128983 + 37584933 37584978 MER5B 177 + 44 89 213403 45 chain 207293 chr19 59128983 + 37594884 37597330 L1PA5 6144 - 0 2413 18698 147 7 0 138 0 2 463 1 0 35 19 0 64 12 20 633 1 0 8 2 6 88 40 1 188 0 4 278 0 16 178 0 1 94 1 0 49 chain 500110 chr19 59128983 + 37599368 37606076 HERVK-int 6823 - 314 6804 6835 5 1 0 24 35 26 11 10 6 10 20 13 28 2 0 13 3 1 14 1 0 12 2 0 9 172 101 5 1 0 8 1 0 3 2 0 20 29 22 21 1 0 11 2 0 74 4 2 9 1 0 4 3 0 51 7 6 117 1 0 35 1 0 100 1 0 22 1 0 195 0 3 13 1 0 225 3 0 231 0 17 1183 3 4 376 1 0 4 0 1 5 4 11 5 0 1 1015 3 7 67 0 3 193 1 0 18 0 1 309 20 14 183 7 6 177 8 6 231 11 0 198 6 5 302 96 0 10 1 0 19 1 0 24 8 6 203 6 5 5 0 1 123 0 11 7 12 1 85 2 0 41 5 10 33 2 0 15 1 0 18 13 11 14 1 0 14 1 0 19 1 0 23 chain 72086 chr19 59128983 + 37606111 37607066 LTR5_Hs 974 - 13 974 47442 50 1 0 207 34 35 9 1 2 10 2 0 5 0 2 178 0 4 68 0 1 390 chain 537320 chr19 59128983 + 37607371 37613515 L1PA4 6152 + 2 6141 3274 578 1 0 247 23 6 354 1 0 57 13 12 588 0 4 838 2 1 484 3 1 172 0 2 440 1 0 1496 0 4 12 0 4 135 0 5 699 chain 53117 chr19 59128983 + 37628669 37629343 MER4A 717 + 0 717 56951 82 1 0 46 6 2 145 0 2 95 0 45 229 0 1 70 chain 19741 chr19 59128983 + 37633607 37634016 MER49 923 - 231 624 127977 107 1 0 21 69 68 64 30 32 7 1 0 53 5 0 17 10 0 24 chain 23418 chr19 59128983 + 37634525 37634820 AluSp 311 + 0 296 113548 17 5 4 242 0 2 31 chain 70653 chr19 59128983 + 37687890 37688698 L1PA6 6164 - 5 812 48083 761 1 0 46 chain 4231 chr19 59128983 + 37688699 37688749 MADE1 96 + 45 96 204150 20 0 1 30 chain 23301 chr19 59128983 + 37694542 37694821 AluSp 311 - 24 303 114192 279 chain 23768 chr19 59128983 + 37710178 37710456 AluSp 311 - 33 311 111663 278 chain 7376 chr19 59128983 + 37717259 37717530 L1MC1 2226 - 39 302 174923 4 1 0 23 133 123 41 13 16 9 1 0 6 0 1 40 chain 26568 chr19 59128983 + 37718012 37718315 AluSp 311 - 8 311 97768 303 chain 66035 chr19 59128983 + 37811689 37812570 LTR5_Hs 974 + 0 961 50080 147 20 22 287 15 21 69 1 68 42 0 1 45 0 4 70 7 7 178 chain 75693 chr19 59128983 + 37822292 37823274 LTR5_Hs 974 + 0 974 45657 289 0 1 112 14 0 65 0 1 188 1 0 163 8 15 19 20 18 103 chain 4041 chr19 59128983 + 37849336 37849382 L1PA17 2846 - 1736 1782 206776 46 chain 20488 chr19 59128983 + 37887765 37888021 AluSc 308 + 10 266 125659 175 0 1 71 1 0 9 chain 17607 chr19 59128983 + 37896776 37896966 L1PA4 6152 - 9 199 133974 190 chain 97125 chr19 59128983 + 37896967 37898066 L1PA5 6144 - 55 1161 37533 276 0 3 515 0 4 308 chain 3712 chr19 59128983 + 37898760 37898815 L1PA16 3655 - 62 117 211763 6 0 3 7 3 0 39 chain 33957 chr19 59128983 + 37912951 37913552 Tigger1 2417 - 1801 2417 77685 50 51 59 132 0 20 8 21 3 45 3 0 102 1 0 4 0 1 24 4 13 101 14 28 12 15 0 14 chain 28135 chr19 59128983 + 37925487 37925903 LTR7B 505 + 0 492 92523 38 0 2 68 0 10 57 0 38 12 21 16 8 0 31 85 6 5 42 0 2 27 15 14 37 chain 54572 chr19 59128983 + 37926131 37929973 L1MA3 4352 + 0 3553 55983 18 25 23 114 1 0 20 2 0 5 3 0 17 3 7 65 15 1 17 0 2 13 2867 2571 90 0 1 30 0 15 127 20 22 229 1 0 8 18 19 10 0 2 14 1 4 109 chain 7555 chr19 59128983 + 37931184 37931363 L1MB5 1630 + 1359 1515 173835 34 12 11 12 18 0 54 28 24 21 chain 31752 chr19 59128983 + 37936341 37936922 L1PB 1623 + 1030 1575 81242 71 6 7 79 0 2 120 20 18 119 1 0 7 2 1 26 108 73 22 chain 30161 chr19 59128983 + 37948388 37948747 L1PA5 6144 + 5782 6144 84305 28 0 1 319 1 3 11 chain 24490 chr19 59128983 + 37963363 37963662 AluSp 311 + 2 300 107596 40 0 1 89 2 0 168 chain 20370 chr19 59128983 + 38014783 38015054 AluSq2 311 + 14 286 125997 119 0 1 4 9 6 7 0 3 132 chain 78217 chr19 59128983 + 38020710 38021669 LTR5_Hs 974 - 0 974 44407 62 1 0 5 0 1 4 5 11 20 5 3 34 8 15 807 0 4 8 chain 6838 chr19 59128983 + 38037066 38037151 Tigger3c 601 + 1 86 178671 85 chain 46029 chr19 59128983 + 38045647 38046200 LTR6B 557 - 0 557 62016 10 0 4 49 12 13 30 0 1 53 2 0 42 0 1 304 1 0 50 chain 77411 chr19 59128983 + 38047311 38049519 HERVS71-int 4705 - 606 2867 44773 6 1 0 46 23 18 12 5 3 11 2 1 39 1 0 21 1 0 10 6 4 26 9 6 17 1 0 22 4 1 33 13 10 20 10 6 28 1 0 4 2 0 4 1 0 7 1 0 29 1 0 5 2 0 5 8 5 15 1 0 6 2 0 13 1 0 35 1 0 16 1 0 3 1 0 52 5 2 33 1 0 29 1 0 6 25 20 57 2 0 17 1 0 16 1 0 7 1 0 8 18 14 29 1 0 3 1 0 9 17 11 18 856 982 323 1 0 138 chain 8468 chr19 59128983 + 38070379 38070479 L1P4 1494 + 1025 1126 168471 84 0 1 16 chain 3348 chr19 59128983 + 38080535 38080576 L1MEa 740 + 7 48 218080 41 chain 6689 chr19 59128983 + 38083294 38083375 MER106A 234 - 78 159 179772 81 chain 24061 chr19 59128983 + 38088340 38088627 AluSp 311 - 24 311 109978 287 chain 13588 chr19 59128983 + 38111353 38111544 MER30 238 - 5 213 146023 40 1 4 64 4 18 82 chain 77521 chr19 59128983 + 38113619 38114674 MER11C 1089 + 0 1073 44729 246 0 9 62 0 4 65 1 0 148 69 70 81 6 10 4 1 0 38 0 1 127 0 1 50 1 0 148 0 1 8 chain 74989 chr19 59128983 + 38120851 38121813 LTR5_Hs 974 - 0 974 46019 62 1 0 5 0 1 9 0 6 20 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 8732 chr19 59128983 + 38136879 38136995 MER44D 709 + 38 153 167018 44 1 0 71 chain 17153 chr19 59128983 + 38138173 38138528 THE1B 368 + 8 368 135159 103 24 25 15 52 45 13 1 5 10 11 19 63 7 6 56 chain 88585 chr19 59128983 + 38171431 38172433 LTR13 1007 - 0 1007 40151 703 1 0 189 1 7 108 chain 22035 chr19 59128983 + 38178857 38179090 SVA_E 1901 + 1668 1901 120086 233 chain 35157 chr19 59128983 + 38192159 38192631 LTR10F 562 + 6 562 75976 51 0 1 32 0 1 25 0 56 57 0 24 13 5 11 223 4 0 62 chain 21321 chr19 59128983 + 38193842 38194135 AluSp 311 - 3 297 122794 15 2 0 129 26 26 44 0 3 77 chain 19667 chr19 59128983 + 38195594 38195856 AluY 311 + 11 287 128206 26 7 14 81 0 1 30 8 14 110 chain 193080 chr19 59128983 + 38232373 38234997 L1PA8A 6298 + 3970 6290 19761 211 0 5 169 1 2 468 5 4 583 1 11 68 1 0 7 1 2 46 316 0 45 8 2 209 0 1 356 0 2 129 chain 24550 chr19 59128983 + 38233945 38234238 AluSx3 311 + 8 300 107255 125 1 0 167 chain 5876 chr19 59128983 + 38242821 38242935 L1MB7 1623 + 662 770 186415 31 34 28 49 chain 54228 chr19 59128983 + 38248215 38248841 L1PA5 6144 + 5517 6135 56207 374 1 0 73 7 0 171 chain 25006 chr19 59128983 + 38255247 38255542 AluYk4 311 - 16 311 104754 295 chain 114112 chr19 59128983 + 38266215 38267811 L1PB1 5432 + 3451 5000 33069 39 0 1 32 9 11 202 48 1 416 0 1 474 3 0 142 75 74 156 chain 24059 chr19 59128983 + 38268403 38268685 AluYc3 301 + 10 292 109989 103 1 2 98 1 0 79 chain 10512 chr19 59128983 + 38286050 38286576 LTR54B 464 + 25 463 158196 102 326 236 31 41 43 26 chain 35216 chr19 59128983 + 38288401 38288889 L1P4 1494 - 125 616 75902 19 1 0 42 0 1 40 24 28 129 1 0 232 chain 74234 chr19 59128983 + 38305817 38306878 MER11A 1151 + 49 1149 46399 30 0 8 112 2 0 25 1 2 63 8 5 21 31 0 87 0 1 279 20 24 37 0 4 70 0 1 16 0 57 103 0 2 10 6 5 73 2 1 24 1 0 40 chain 26597 chr19 59128983 + 38325029 38325332 AluYf4 310 + 7 310 97676 303 chain 562829 chr19 59128983 + 38328142 38334173 L1PA2 6032 + 1 6032 271 6031 chain 24573 chr19 59128983 + 38335765 38336083 AluSc 308 + 0 305 107115 67 6 0 64 1 0 154 6 0 20 chain 6207 chr19 59128983 + 38342102 38342190 MER54B 801 + 688 775 183533 54 7 6 27 chain 76030 chr19 59128983 + 38356816 38357784 LTR5_Hs 974 + 0 974 45462 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 35050 chr19 59128983 + 38358569 38359424 LTR59 565 - 0 565 76117 66 14 21 26 21 4 45 21 13 101 0 2 5 0 2 25 13 11 57 275 0 153 10 11 23 chain 26538 chr19 59128983 + 38359485 38360214 MER4A1 472 - 20 472 97898 10 0 4 85 5 6 31 0 2 26 346 58 46 0 3 47 1 0 104 1 0 8 0 1 7 0 2 12 chain 42444 chr19 59128983 + 38361499 38362068 MER4D1 891 - 302 891 66086 18 0 1 140 9 0 20 1 0 29 0 1 114 0 28 238 chain 21886 chr19 59128983 + 38364704 38365020 MER50 708 - 278 599 120681 30 7 16 18 2 1 65 13 10 181 chain 11188 chr19 59128983 + 38381594 38381731 L1PA7 6471 - 12 146 155475 94 4 1 39 chain 23938 chr19 59128983 + 38395604 38395890 AluSc5 308 + 10 298 110704 54 0 3 212 1 0 19 chain 3676 chr19 59128983 + 38395936 38395986 MER33 330 + 180 234 212286 19 1 0 16 0 5 14 chain 24738 chr19 59128983 + 38402152 38402438 AluYc3 301 - 16 301 106235 106 2 0 64 1 2 113 chain 5541 chr19 59128983 + 38415333 38415405 Tigger3b 1229 - 938 1011 189656 5 0 1 67 chain 4112 chr19 59128983 + 38463604 38463653 MLT1J 494 - 348 397 205750 49 chain 4262 chr19 59128983 + 38478121 38478234 MER20 218 - 63 186 203724 12 9 7 42 35 47 15 chain 20461 chr19 59128983 + 38539448 38539730 AluSc8 310 + 0 293 125729 71 1 7 53 23 27 16 0 1 118 chain 3842 chr19 59128983 + 38541713 38541759 MIR 256 + 190 236 209750 46 chain 5683 chr19 59128983 + 38544524 38544602 MADE1 96 - 2 96 188264 34 2 18 42 chain 13007 chr19 59128983 + 38544711 38544859 AluSp 311 + 9 157 148215 148 chain 11353 chr19 59128983 + 38582879 38583017 L1PA6 6164 + 6027 6162 154887 70 1 0 58 2 0 7 chain 3796 chr19 59128983 + 38598983 38599029 MIRb 242 + 88 134 210439 46 chain 157940 chr19 59128983 + 38613906 38615679 SVA_D 2077 - 0 2063 23600 267 0 1 327 0 147 112 5 3 133 0 184 62 40 0 827 chain 24047 chr19 59128983 + 38622917 38623250 AluSp 311 + 0 308 110059 65 41 16 227 chain 25253 chr19 59128983 + 38677353 38677668 AluSp 311 + 5 303 103460 159 18 1 138 chain 25145 chr19 59128983 + 38678108 38678377 AluYf4 310 + 33 302 104034 269 chain 23557 chr19 59128983 + 38705856 38706158 AluSx1 309 + 8 308 112813 103 1 0 16 2 1 180 chain 24018 chr19 59128983 + 38745445 38745721 AluSp 311 - 24 309 110223 97 0 10 60 1 0 118 chain 4816 chr19 59128983 + 38785184 38785252 HY3 101 + 1 70 197158 22 1 2 45 chain 23549 chr19 59128983 + 38805617 38805910 AluSp 311 + 1 307 112854 114 8 21 171 chain 18143 chr19 59128983 + 38819673 38819881 AluYf4 310 + 85 292 132489 124 2 0 39 0 1 43 chain 22513 chr19 59128983 + 38836147 38836451 AluSp 311 - 15 311 117971 154 21 10 39 0 1 23 0 2 67 chain 111627 chr19 59128983 + 38854131 38855377 SVA_D 2077 - 0 1841 33767 41 0 26 604 1 490 266 0 80 334 chain 3015 chr19 59128983 + 38909939 38909973 MIR 256 - 114 148 224724 34 chain 3250 chr19 59128983 + 38927151 38927188 L1ME2z 1083 - 226 263 220011 37 chain 3824 chr19 59128983 + 38958772 38958822 AluJr 308 + 94 147 210010 33 0 3 17 chain 43133 chr19 59128983 + 38989061 38989607 MER41A 554 - 1 554 65251 183 0 1 20 9 1 288 0 14 46 chain 22194 chr19 59128983 + 39060825 39061096 AluSx4 309 + 10 285 119380 29 0 4 242 chain 23670 chr19 59128983 + 39065423 39065697 AluY 311 + 26 300 112198 274 chain 24613 chr19 59128983 + 39072761 39073060 AluSp 311 + 6 303 106917 284 2 0 13 chain 16856 chr19 59128983 + 39079190 39079408 AluY 311 + 82 299 135953 51 2 0 18 8 9 139 chain 18048 chr19 59128983 + 39118030 39118329 AluSp 311 + 9 296 132739 9 1 0 188 48 36 17 12 13 24 chain 80966 chr19 59128983 + 39121778 39122729 LTR5_Hs 974 - 0 974 43207 70 0 4 27 2 0 20 0 1 21 0 7 293 0 1 244 0 1 149 0 7 111 0 4 14 chain 25167 chr19 59128983 + 39124961 39125251 AluSp 311 + 5 294 103920 264 2 1 24 chain 25332 chr19 59128983 + 39131997 39132289 AluSp 311 + 4 296 103060 292 chain 24806 chr19 59128983 + 39163226 39163512 AluSp 311 - 25 311 105856 286 chain 24024 chr19 59128983 + 39164424 39164717 AluSg7 307 - 7 305 110196 33 5 9 126 0 1 129 chain 3663 chr19 59128983 + 39190959 39191050 MIRb 242 + 31 120 212519 36 38 36 17 chain 23829 chr19 59128983 + 39237294 39237596 AluY 311 + 0 305 111311 36 3 0 82 3 0 14 0 1 97 0 8 67 chain 4194 chr19 59128983 + 39241005 39241106 LTR7B 505 + 0 139 204633 33 38 76 30 chain 258372 chr19 59128983 + 39241132 39244288 HERVH-int 3825 + 436 3825 15789 97 1 0 37 2 1 9 1 0 7 27 17 14 1 38 53 23 2 53 0 2 12 0 1 59 0 3 845 0 5 610 0 1 44 1 5 719 9 11 39 37 247 69 6 0 6 5 11 147 0 2 223 chain 9051 chr19 59128983 + 39287641 39287749 U6 107 - 0 107 165309 76 1 0 31 chain 145727 chr19 59128983 + 39287787 39289460 SVA_D 2077 - 3 2077 25220 5 3 0 44 1 0 84 0 20 476 0 1 19 0 49 41 0 78 140 13 0 31 0 183 138 0 40 345 1 5 281 0 17 22 0 26 29 chain 25218 chr19 59128983 + 39293644 39293946 AluSc5 308 - 0 298 103648 229 4 0 69 chain 19051 chr19 59128983 + 39294933 39295163 AluSp 311 - 26 256 129967 230 chain 26344 chr19 59128983 + 39296733 39297036 AluY 311 + 8 311 98638 303 chain 51727 chr19 59128983 + 39298154 39298752 SVA_A 1864 + 1238 1841 57802 7 2 0 304 8 15 277 chain 11915 chr19 59128983 + 39312620 39312812 LTR12C 1709 + 737 928 75467 101 1 0 90 chain 35628 chr19 59128983 + 39312812 39313310 LTR12C 1709 + 650 1108 75370 43 50 10 116 0 1 17 1 0 271 chain 3103 chr19 59128983 + 39312855 39312905 LTR12C 1709 + 971 1022 75467 7 0 1 43 chain 2005 chr19 59128983 + 39313310 39313338 LTR12C 1709 + 948 976 98878 28 chain 300532 chr19 59128983 + 39314025 39317658 HERV9-int 5642 + 0 3729 13393 291 5 0 103 0 1 68 4 8 36 11 23 129 0 1 135 1 0 109 0 85 25 13 13 80 4 0 137 1 0 787 0 1 235 2 1 135 6 9 30 11 12 361 0 1 150 1 0 763 chain 153740 chr19 59128983 + 39345619 39347374 SVA_D 2077 - 8 2071 24117 292 0 2 365 18 17 4 0 1 35 1 2 137 0 311 882 7 1 14 chain 83933 chr19 59128983 + 39350153 39351112 LTR13A 966 - 0 955 41937 195 1 0 70 7 1 231 0 1 56 0 2 399 chain 13560 chr19 59128983 + 39353131 39353527 LTR35A 463 - 15 371 146134 81 57 46 8 2 0 24 4 1 11 77 67 42 1 0 38 30 17 21 chain 7030 chr19 59128983 + 39356094 39356183 LTR8 732 - 0 89 177251 89 chain 22934 chr19 59128983 + 39356938 39357240 AluSc 308 + 4 302 115936 249 7 6 19 3 0 24 chain 3179 chr19 59128983 + 39357431 39357467 MLT1B 390 + 319 355 221365 36 chain 12537 chr19 59128983 + 39363370 39363524 L1PA7 6471 + 6312 6465 150089 32 1 0 121 chain 25484 chr19 59128983 + 39392725 39393009 AluYc 301 - 17 301 102299 284 chain 28388 chr19 59128983 + 39413854 39414161 AluYa5 310 - 4 310 91630 180 1 0 126 chain 23726 chr19 59128983 + 39414338 39414622 AluYk4 311 + 0 290 111903 99 0 10 18 4 0 163 chain 37798 chr19 59128983 + 39425803 39426313 MER9a3 513 - 0 513 72423 77 0 1 143 0 18 14 23 4 145 10 11 79 2 4 17 chain 364964 chr19 59128983 + 39426313 39430641 HERVK9-int 4720 - 0 4684 11229 10 0 1 738 0 10 327 18 10 321 5 0 207 0 358 403 0 1 1076 1 0 229 9 10 176 0 4 147 0 4 509 1 0 19 1 0 28 1 0 8 1 0 50 1 0 15 1 0 5 8 5 13 chain 41667 chr19 59128983 + 39431966 39432475 MER9a3 513 - 0 513 67073 77 0 1 324 10 11 80 0 2 18 chain 22369 chr19 59128983 + 39441250 39442266 MER87B 500 + 5 443 118635 73 0 1 81 0 3 12 0 4 19 681 88 33 18 25 99 chain 3157 chr19 59128983 + 39462710 39462750 LTR54 533 - 0 41 221776 32 0 1 8 chain 24148 chr19 59128983 + 39502828 39503122 AluSp 311 - 14 310 109482 20 0 2 274 chain 3768 chr19 59128983 + 39509737 39509783 Tigger2 2703 + 870 916 210850 46 chain 3626 chr19 59128983 + 39531785 39531825 LOR1-int 1871 + 1009 1049 213235 40 chain 14613 chr19 59128983 + 39531825 39532044 THE1C 375 - 0 218 142543 87 3 0 50 12 13 38 1 2 28 chain 20487 chr19 59128983 + 39537803 39538117 LTR46 455 + 146 455 125662 42 0 1 4 12 9 99 4 3 87 20 18 46 chain 8767 chr19 59128983 + 39540446 39540549 THE1B 368 - 265 368 166833 103 chain 28297 chr19 59128983 + 39549173 39549471 SVA_F 1814 - 2 300 91955 298 chain 17585 chr19 59128983 + 39550680 39550914 L1MA2 4263 - 389 617 134038 68 3 0 97 2 0 47 1 0 16 chain 47482 chr19 59128983 + 39558685 39559321 LTR12 884 - 15 884 60851 46 16 12 70 0 107 257 2 0 39 1 2 20 0 132 159 1 0 25 chain 4233 chr19 59128983 + 39578970 39579021 Charlie1a 1436 - 479 530 204134 51 chain 21836 chr19 59128983 + 39582738 39583008 AluSq2 311 + 8 278 120871 270 chain 21378 chr19 59128983 + 39585409 39585738 THE1A 353 - 11 353 122591 151 0 1 23 1 0 6 0 1 26 11 25 15 18 17 29 0 1 34 2 0 13 chain 125073 chr19 59128983 + 39585746 39587293 THE1A-int 1579 - 8 1573 29371 645 0 7 511 4 13 99 3 4 199 0 1 86 chain 10187 chr19 59128983 + 39587299 39587413 THE1A 353 - 0 114 159687 114 chain 3388 chr19 59128983 + 39697888 39697926 MIRb 242 + 195 233 217326 38 chain 22628 chr19 59128983 + 39711027 39711331 AluSc 308 - 14 297 117431 10 20 0 174 2 1 98 chain 18308 chr19 59128983 + 39715985 39716226 AluY 311 + 58 298 132056 146 4 5 60 2 0 29 chain 7253 chr19 59128983 + 39740881 39741003 LTR75_1 542 + 409 526 175750 21 2 0 14 9 11 19 5 0 52 chain 7812 chr19 59128983 + 39741220 39741324 MER41C 542 - 20 123 172238 87 4 3 13 chain 9759 chr19 59128983 + 39767307 39767767 LTR47A 437 - 259 428 161804 17 22 1 42 0 23 52 293 0 34 chain 88263 chr19 59128983 + 39770843 39772432 HSMAR1 1287 + 13 1287 40276 128 0 2 202 6 5 26 36 37 59 7 0 48 312 0 66 0 3 307 9 12 57 0 1 94 3 2 35 0 1 5 1 0 24 2 3 63 17 14 31 4 2 47 chain 14184 chr19 59128983 + 39812887 39813055 AluSx 319 - 22 191 143938 15 0 1 153 chain 20717 chr19 59128983 + 39869266 39869533 AluY 311 + 0 272 124902 39 6 7 86 0 1 55 0 3 81 chain 7746 chr19 59128983 + 39956531 39956641 Tigger4a 237 - 43 175 172624 7 0 8 66 3 17 34 chain 75594 chr19 59128983 + 39970101 39971081 LTR5_Hs 974 + 0 974 45720 17 0 4 112 27 0 152 0 1 233 9 15 158 4 11 116 8 15 37 3 0 41 1 0 62 chain 4672 chr19 59128983 + 39982120 39982171 MER3 215 + 89 140 198845 51 chain 27608 chr19 59128983 + 39984043 39984461 LTR7 482 + 0 482 94327 138 21 28 10 25 35 10 1 2 31 1 0 10 1 46 76 0 2 94 chain 5694 chr19 59128983 + 40002782 40002948 MSTB 430 - 244 410 188160 19 12 4 5 2 0 20 14 0 7 23 44 20 0 1 14 4 6 26 chain 23716 chr19 59128983 + 40016266 40016560 AluY 311 + 0 288 111956 118 6 0 14 0 1 91 1 0 64 chain 13562 chr19 59128983 + 40031737 40031898 LTR71A 459 - 298 459 146125 161 chain 243920 chr19 59128983 + 40068072 40071359 L1PA7 6471 - 10 3271 16569 120 36 36 234 0 10 101 0 2 122 0 2 213 3 0 7 1 2 159 0 1 70 1 2 31 10 5 124 107 4 129 3 4 91 0 51 269 0 4 282 0 1 269 0 1 124 1 0 89 1 2 347 0 4 110 19 23 56 14 16 144 chain 71595 chr19 59128983 + 40077166 40077986 L1PA4 6152 - 11 829 47660 644 3 1 173 chain 83011 chr19 59128983 + 40084915 40085889 L1P1 4361 - 193 1172 42332 20 1 0 63 0 1 151 0 1 428 0 1 123 3 5 119 0 1 66 chain 28531 chr19 59128983 + 40099382 40099681 AluYa8 305 + 0 299 91047 299 chain 473283 chr19 59128983 + 40109133 40115271 L1PA7 6471 - 5 6379 7938 7 2 0 327 1 0 511 1 0 112 0 1 231 0 1 65 0 106 22 14 0 188 1 0 342 0 1 229 1 3 713 0 1 58 0 4 288 1 0 4 0 1 146 0 1 456 15 7 59 2 0 5 0 2 30 1 8 208 7 8 478 1 0 54 0 1 34 0 1 183 1 2 71 0 4 106 10 9 4 0 1 54 0 1 34 1 62 191 5 16 113 4 0 6 2 6 108 28 61 147 1 13 149 4 0 10 30 40 74 1 3 19 14 15 7 0 1 121 8 12 18 chain 148684 chr19 59128983 + 40118697 40120331 L1PA3long 6157 - 0 1636 24792 5 0 2 769 1 0 235 0 1 624 chain 267516 chr19 59128983 + 40123622 40126818 L1PA6 6164 - 2 3238 15317 6 4 0 787 0 1 214 0 1 93 7 16 485 0 3 80 9 33 436 0 1 570 0 1 4 1 0 241 0 1 252 0 4 7 chain 47868 chr19 59128983 + 40133549 40134124 L1PA7 6471 + 5882 6459 60579 254 0 1 311 0 1 10 chain 504022 chr19 59128983 + 40139856 40145883 L1PA6 6164 + 0 6159 6600 64 1 2 68 25 44 238 0 1 50 1 0 287 0 1 95 3 9 1463 5 4 373 0 2 335 13 11 177 1 0 44 0 5 182 0 3 829 3 5 352 1 90 419 0 1 486 0 1 118 0 2 282 0 4 112 chain 119408 chr19 59128983 + 40156047 40157599 THE1A-int 1579 - 7 1573 31264 206 1 0 281 3 19 79 8 5 194 9 10 606 0 1 165 chain 28010 chr19 59128983 + 40157605 40157959 THE1A 353 - 0 353 92966 243 1 0 110 chain 269134 chr19 59128983 + 40158080 40161057 L1PA3long 6157 + 3197 6153 15225 1579 24 2 369 0 1 1005 chain 12512 chr19 59128983 + 40162074 40162213 L1PA5 6144 - 9 148 150198 139 chain 8514 chr19 59128983 + 40162213 40162309 L1PA5 6144 + 5857 5953 168220 96 chain 543726 chr19 59128983 + 40204588 40210732 L1PA4 6152 - 1 6152 2242 159 3 4 512 0 2 550 0 1 571 0 4 62 0 1 31 1 0 3018 1 0 1236 chain 40438 chr19 59128983 + 40210775 40211295 L1PA7 6471 + 5943 6466 68678 294 6 10 30 0 2 178 3 0 9 chain 268135 chr19 59128983 + 40213123 40216457 L1PA7 6471 + 3097 6438 15285 410 1 5 16 0 1 4 17 22 281 2 0 84 0 1 98 0 1 237 17 4 110 0 1 293 1 7 313 1 0 628 2 1 6 0 4 229 0 1 276 2 1 76 0 1 230 chain 65742 chr19 59128983 + 40222721 40223434 L1PA2 6032 - 1 713 50223 261 1 0 451 chain 39634 chr19 59128983 + 40223434 40223865 L1PA2 6032 + 4887 5318 69848 431 chain 234666 chr19 59128983 + 40231362 40234785 L1PB1 5432 - 148 3504 17051 4 1 0 44 18 16 52 33 26 4 1 0 24 15 11 53 1 0 31 4 5 95 5 4 100 26 22 157 25 22 162 0 13 9 20 5 355 6 0 66 0 1 131 29 23 117 5 1 53 6 7 68 2 1 4 0 1 395 27 1 53 47 33 179 0 5 7 13 23 66 0 1 174 1 0 80 0 1 84 5 0 204 11 0 310 0 3 18 3 12 20 chain 36321 chr19 59128983 + 40238264 40238721 L1PA7 6471 + 6014 6467 74476 447 4 0 6 chain 17004 chr19 59128983 + 40238796 40239135 L1M1 2793 + 782 1119 135580 20 1 0 29 2 0 8 1 0 4 74 71 89 1 0 52 4 6 48 0 4 6 chain 19170 chr19 59128983 + 40251376 40251668 L1MA2 4263 + 3811 4104 129614 60 4 14 70 12 10 92 7 0 47 chain 5364 chr19 59128983 + 40254160 40254222 LTR43 600 - 0 62 191380 62 chain 27790 chr19 59128983 + 40257559 40257850 AluYa5 310 - 0 291 93734 291 chain 24867 chr19 59128983 + 40264122 40264421 AluSx4 309 + 1 300 105535 299 chain 19316 chr19 59128983 + 40272866 40273210 THE1B 368 + 20 360 129194 87 29 31 31 53 49 12 1 0 123 1 0 7 chain 15880 chr19 59128983 + 40273544 40273830 L1PB1 5432 - 12 273 138706 16 1 0 13 1 0 21 1 0 19 7 5 14 8 5 30 15 3 14 1 0 44 1 0 15 2 1 53 2 0 8 chain 15215 chr19 59128983 + 40280157 40280498 L1PB1 5432 + 5114 5422 140731 24 2 0 6 1 0 12 2 0 3 2 0 8 2 0 53 6 5 11 1 0 44 1 0 14 2 0 8 16 6 18 12 9 11 2 0 24 1 0 4 18 17 13 1 0 14 1 0 4 chain 22361 chr19 59128983 + 40281174 40281452 AluSp 311 + 11 288 118664 70 1 0 207 chain 25826 chr19 59128983 + 40286098 40286397 AluYc 301 + 2 301 100763 119 0 2 120 3 1 57 chain 22768 chr19 59128983 + 40291267 40291543 AluSp 311 - 8 278 116736 10 6 0 260 chain 3236 chr19 59128983 + 40292655 40292693 MER3 215 - 5 43 220308 38 chain 27142 chr19 59128983 + 40297863 40298250 L1MA3 4352 + 3294 3684 95785 93 18 16 111 8 13 157 chain 6319 chr19 59128983 + 40303614 40303799 MER33 330 - 102 311 182647 47 95 119 43 chain 4321 chr19 59128983 + 40436799 40436857 L1MA3 4352 + 3339 3396 202945 48 1 0 9 chain 22194 chr19 59128983 + 40436922 40437189 AluSz 310 - 42 308 119378 8 1 0 258 chain 37484 chr19 59128983 + 40447946 40448414 LTR15 485 + 0 478 72837 22 0 1 16 0 1 67 0 1 42 0 2 99 0 3 27 0 4 152 1 0 5 2 0 15 0 1 20 chain 29033 chr19 59128983 + 40463963 40464311 LTR7 482 + 0 379 88837 263 1 32 84 chain 76232 chr19 59128983 + 40465137 40466069 LTR5_Hs 974 - 0 974 45348 101 2 0 38 3 11 167 16 16 109 0 1 245 0 1 168 0 34 83 chain 25405 chr19 59128983 + 40466441 40466739 AluSp 311 - 1 300 102659 222 0 1 76 chain 49308 chr19 59128983 + 40474383 40475095 LTR17 781 + 0 773 59514 53 0 1 171 3 0 7 0 1 5 13 15 74 1 0 63 20 11 35 0 4 33 3 0 42 7 6 9 1 0 26 0 49 111 0 22 35 chain 5842 chr19 59128983 + 40483063 40483144 MER30 238 + 126 210 186751 63 2 5 16 chain 10964 chr19 59128983 + 40498217 40498594 L1MA8 2339 - 196 545 156346 20 28 6 17 3 1 90 1 0 20 170 167 28 chain 22763 chr19 59128983 + 40506259 40506549 AluSg7 307 + 10 307 116765 121 0 1 73 1 7 95 chain 543639 chr19 59128983 + 40543822 40549961 L1PA4 6152 - 1 6151 2250 146 1 0 703 0 4 900 0 2 455 2 3 861 0 5 1199 0 1 26 1 5 1005 18 1 259 0 9 102 0 4 59 7 6 395 chain 9871 chr19 59128983 + 40551283 40551426 L1MA4A 3247 + 2989 3130 161229 109 4 3 6 1 0 23 chain 7049 chr19 59128983 + 40577847 40577921 HERV17-int 4347 + 4273 4347 177119 74 chain 28457 chr19 59128983 + 40578235 40578561 LTR17 781 + 0 326 91343 326 chain 7278 chr19 59128983 + 40586299 40586413 L1PA15 4387 + 4218 4327 175602 49 8 5 42 3 1 12 chain 35369 chr19 59128983 + 40597741 40598150 L1PA5 6144 + 5730 6140 75706 80 0 1 329 chain 14900 chr19 59128983 + 40600340 40600514 L1PA7 6471 - 10 184 141631 9 1 0 143 0 1 21 chain 122920 chr19 59128983 + 40605664 40607000 L1PA4 6152 + 4815 6151 30072 1336 chain 27322 chr19 59128983 + 40611226 40611516 AluYd8 298 + 1 291 95201 290 chain 165858 chr19 59128983 + 40613119 40615602 SVA_F 1814 - 0 1804 22532 540 467 0 308 3 18 24 128 0 36 99 0 878 chain 12255 chr19 59128983 + 40613664 40613968 SVA_F 1814 - 582 896 72168 45 2 0 10 1 0 166 1 0 10 1 0 39 0 15 29 chain 4388 chr19 59128983 + 40614021 40614079 SVA_F 1814 - 900 959 202104 33 2 3 23 chain 1743 chr19 59128983 + 40614517 40614565 SVA_F 1814 - 1026 1113 144539 12 1 0 25 6 46 4 chain 3583 chr19 59128983 + 40614625 40614664 SVA_F 1814 - 813 852 152823 39 chain 99197 chr19 59128983 + 40619457 40620540 L1PA2 6032 - 1 1082 36972 207 2 0 874 chain 6704 chr19 59128983 + 40620541 40620612 U3 216 - 145 216 179653 71 chain 166078 chr19 59128983 + 40623123 40625293 SVA_F 1814 + 9 1814 22508 207 1 0 684 275 0 48 0 15 214 1 0 4 1 0 93 101 0 530 1 0 10 chain 4958 chr19 59128983 + 40624015 40624081 SVA_F 1814 + 964 1108 130290 14 5 5 17 0 1 10 1 0 13 5 83 1 chain 12076 chr19 59128983 + 40624081 40624240 SVA_F 1814 + 917 1091 89961 30 4 19 125 chain 6173 chr19 59128983 + 40624651 40624719 SVA_F 1814 + 1098 1166 130940 68 chain 23991 chr19 59128983 + 40638707 40638985 L1PA3long 6157 - 0 279 110380 148 2 3 128 chain 23767 chr19 59128983 + 40656740 40657027 AluSp 311 + 7 294 111668 287 chain 21463 chr19 59128983 + 40660734 40661017 AluY 311 + 28 303 122279 95 1 0 10 8 1 169 chain 5613 chr19 59128983 + 40661662 40661731 MER74A 558 - 45 114 188956 69 chain 4052 chr19 59128983 + 40669166 40669238 FLAM_A 137 - 21 94 206613 6 0 2 29 12 11 25 chain 121369 chr19 59128983 + 40675186 40676612 LTR12C 1709 - 0 1709 30575 481 0 4 106 4 2 171 3 284 661 chain 11428 chr19 59128983 + 40707725 40707891 L1PA8 5853 - 6 172 154571 33 1 0 54 1 0 19 10 9 9 0 1 34 0 2 5 chain 11379 chr19 59128983 + 40764704 40765079 L1MB5 1630 + 16 395 154785 6 0 2 70 118 119 14 2 0 26 80 83 59 chain 27160 chr19 59128983 + 40812698 40812995 AluYf4 310 - 13 310 95723 297 chain 7167 chr19 59128983 + 40844967 40845050 HY3 101 - 1 84 176280 83 chain 8774 chr19 59128983 + 40848235 40848346 HY1 111 + 0 111 166794 111 chain 24789 chr19 59128983 + 40936864 40937163 AluSp 311 - 12 311 105949 299 chain 24723 chr19 59128983 + 40943789 40944078 AluSp 311 + 11 300 106303 289 chain 26607 chr19 59128983 + 40979261 40979563 AluSp 311 - 9 311 97631 302 chain 3923 chr19 59128983 + 41023696 41023764 MIRb 242 - 101 170 208517 43 10 11 15 chain 67875 chr19 59128983 + 41052940 41053721 L1PA6 6164 - 2 783 49298 781 chain 3832 chr19 59128983 + 41058909 41058977 MIR 256 + 68 137 209887 18 14 15 36 chain 12354 chr19 59128983 + 41127243 41127391 L1PA16 3655 - 118 267 150821 144 0 1 4 chain 21523 chr19 59128983 + 41137607 41137932 THE1D 372 + 0 332 122064 13 0 2 26 12 0 12 1 11 102 24 30 67 0 1 68 chain 21137 chr19 59128983 + 41151169 41151470 AluSg7 307 + 8 306 123422 28 3 0 95 0 1 6 7 4 7 0 3 10 13 12 132 chain 163489 chr19 59128983 + 41153272 41155109 SVA_D 2077 - 4 2065 22878 7 8 0 8 0 3 573 0 98 346 0 2 35 0 85 155 3 0 35 0 3 90 0 40 412 0 4 165 chain 6489 chr19 59128983 + 41155110 41155194 L1M1 2793 + 1168 1251 181335 10 2 1 72 chain 31658 chr19 59128983 + 41165877 41166309 LTR7B 505 + 0 505 81391 105 0 10 51 0 1 8 0 38 12 3 27 26 0 2 85 1 0 76 14 13 51 chain 22626 chr19 59128983 + 41166909 41167236 HSMAR2 1300 - 960 1297 117452 57 14 20 72 0 3 46 1 5 73 5 2 59 chain 3148 chr19 59128983 + 41212664 41212698 Charlie1a 1436 + 1312 1346 221986 34 chain 4822 chr19 59128983 + 41225694 41225750 MIR 256 - 96 153 197102 25 0 1 31 chain 6901 chr19 59128983 + 41237666 41237860 MER21A 919 - 674 862 178185 23 20 22 22 12 0 23 1 0 32 43 48 18 chain 25511 chr19 59128983 + 41257956 41258252 AluSp 311 + 0 292 102175 29 4 0 263 chain 23777 chr19 59128983 + 41260005 41260304 AluSg7 307 - 11 307 111612 19 5 0 145 0 1 66 0 1 64 chain 16039 chr19 59128983 + 41277020 41277461 LTR12D 1347 - 163 907 138254 56 177 353 31 33 51 69 0 109 75 chain 7187 chr19 59128983 + 41277497 41277579 LTR12D 1347 - 673 755 176165 82 chain 20642 chr19 59128983 + 41307573 41307800 SVA_D 2077 - 0 228 125153 154 0 1 73 chain 23232 chr19 59128983 + 41323336 41323638 AluSc8 310 + 9 307 114534 97 7 6 20 0 3 166 6 0 6 chain 30767 chr19 59128983 + 41339613 41340033 LTR15 485 + 51 475 82920 56 0 1 42 0 2 125 3 7 67 1 2 43 2 1 42 4 0 17 0 1 18 chain 29244 chr19 59128983 + 41370509 41370926 LTR15 485 + 54 475 87824 53 0 1 42 0 2 127 4 8 54 14 15 40 2 1 42 4 0 17 0 1 18 chain 105174 chr19 59128983 + 41377296 41379063 L1MA3 4352 - 871 2420 35458 100 1 0 26 19 20 12 15 11 167 1 0 4 4 5 7 0 1 14 0 1 149 4 0 44 65 67 261 1 0 93 253 40 146 1 0 160 0 1 220 chain 6111 chr19 59128983 + 41379250 41379372 L1MC2 1988 - 363 492 184333 67 40 47 15 chain 22850 chr19 59128983 + 41393791 41394085 AluSc8 310 + 0 300 116345 9 4 0 122 0 4 13 0 8 129 2 0 15 chain 24808 chr19 59128983 + 41400064 41400346 AluY 311 + 16 298 105845 282 chain 21736 chr19 59128983 + 41410498 41410782 AluSc 308 + 5 291 121254 265 7 9 12 chain 490968 chr19 59128983 + 41418612 41424818 L1PA5 6144 + 0 6131 7320 121 0 14 18 3 15 376 0 2 242 31 14 16 0 17 334 9 0 215 0 1 571 1 2 295 4 5 47 6 1 89 0 2 797 1 0 5 1 2 26 0 3 28 0 2 248 0 1 433 0 1 236 0 3 36 1 4 258 0 1 837 324 5 464 0 211 133 chain 13857 chr19 59128983 + 41424052 41424207 L1PA4 6152 + 5988 6143 145043 155 chain 66580 chr19 59128983 + 41425168 41426182 MER11A 1151 + 56 1132 49838 8 5 0 23 0 91 52 5 9 50 9 5 149 0 1 11 11 0 83 0 1 144 4 6 146 39 38 10 18 0 37 0 1 60 8 9 142 chain 37835 chr19 59128983 + 41434694 41435184 HERV1_LTRc 486 - 0 486 72360 57 15 10 122 9 10 287 chain 15742 chr19 59128983 + 41441637 41441832 MER107 203 - 1 199 139138 23 0 3 172 chain 47855 chr19 59128983 + 41460077 41460658 LTR14C 587 + 0 587 60586 253 0 6 328 chain 5171 chr19 59128983 + 41463769 41464136 HERVK14C-int 762 + 572 759 193342 46 4 3 13 139 63 21 121 18 23 chain 38679 chr19 59128983 + 41464628 41465083 LTR14C 587 + 0 457 71178 279 0 2 176 chain 36024 chr19 59128983 + 41470122 41470578 L1PA6 6164 - 5 461 74869 456 chain 14199 chr19 59128983 + 41470586 41470748 L1P3 4156 - 394 556 143880 162 chain 72660 chr19 59128983 + 41470755 41471727 SVA_E 1901 - 338 1412 47188 429 1 0 155 6 13 39 4 0 110 1 0 5 1 0 8 30 63 6 1 0 15 1 2 49 62 88 27 7 50 15 chain 5648 chr19 59128983 + 41471616 41471678 SVA_E 1901 - 602 664 118445 62 chain 7834 chr19 59128983 + 41471727 41471813 SVA_E 1901 - 713 799 118445 86 chain 115123 chr19 59128983 + 41471884 41473334 SVA_D 2077 - 518 2014 32747 17 1 0 16 0 1 93 78 0 22 18 17 4 0 1 87 0 1 210 0 97 32 0 1 10 12 54 687 18 1 145 chain 6318 chr19 59128983 + 41472011 41472089 SVA_D 2077 - 870 948 81120 78 chain 243980 chr19 59128983 + 41473523 41477505 L1P2 5180 - 1955 5178 16564 16 22 20 12 0 1 165 792 0 556 0 4 55 0 4 62 14 14 1053 0 1 373 0 1 94 9 7 141 0 1 130 1 0 115 25 32 119 3 2 22 27 48 27 1 0 148 chain 69249 chr19 59128983 + 41473750 41474522 L1PA4 6152 + 5379 6151 48705 772 chain 6005 chr19 59128983 + 41479961 41480027 L1PA5 6144 + 5579 5645 185194 66 chain 40060 chr19 59128983 + 41480027 41480522 L1PA5 6144 + 5646 6144 69232 346 5 6 108 0 2 36 chain 63276 chr19 59128983 + 41493244 41494028 HERV17-int 4347 - 0 2458 51334 348 0 1 114 0 1 148 0 1672 174 chain 36814 chr19 59128983 + 41494451 41494873 MER11C 1089 + 650 1073 73786 105 0 1 317 chain 9496 chr19 59128983 + 41498797 41498910 HERV1_LTRc 486 - 274 388 163096 46 0 1 67 chain 22726 chr19 59128983 + 41499159 41499565 THE1D 372 - 0 372 116952 105 39 1 64 6 0 8 18 28 78 20 6 8 0 14 60 chain 38196 chr19 59128983 + 41501718 41502206 HERV1_LTRc 486 - 0 486 71839 52 5 0 61 0 1 75 9 10 193 3 4 90 chain 106453 chr19 59128983 + 41504330 41505504 L1PA3long 6157 - 0 1178 35135 253 1 0 590 0 4 325 0 1 5 chain 16071 chr19 59128983 + 41509544 41509734 MER107 203 - 1 197 138145 23 0 6 167 chain 354125 chr19 59128983 + 41538973 41544354 L1P1 4361 + 2 4341 11504 107 0 1 5 1 0 124 2 1 306 1 0 188 1 0 694 0 1 387 0 1 376 0 4 32 1 2 14 0 2 56 14 12 659 1038 3 180 0 1 7 8 4 76 14 0 11 2 3 85 0 7 202 17 17 104 0 1 475 1 0 155 1 0 23 2 1 12 chain 89189 chr19 59128983 + 41541949 41542978 LTR5A 1029 - 0 1029 39934 48 1 0 503 0 2 326 1 0 150 chain 52801 chr19 59128983 + 41544423 41545066 L1PA6 6164 + 5524 6162 57132 304 3 0 326 2 0 8 chain 16187 chr19 59128983 + 41549039 41549259 L1PA8 5853 + 5638 5853 137797 44 1 0 11 2 0 47 2 1 14 6 5 93 chain 21041 chr19 59128983 + 41575833 41576225 L1PA15 4387 - 34 406 123761 24 7 3 10 20 18 28 13 10 43 1 0 10 18 10 12 1 0 55 1 0 24 1 0 51 0 1 73 chain 507655 chr19 59128983 + 41604443 41612084 L1PA6 6164 + 0 6161 6352 460 6 5 258 19 15 47 3 20 210 0 20 1445 40 7 702 0 1 621 29 1 319 0 9 105 1483 0 664 0 1 382 0 4 173 0 21 472 0 1 4 2 1 185 4 0 8 chain 92324 chr19 59128983 + 41608732 41610151 SVA_F 1814 + 609 1803 38872 96 6 86 25 1 0 4 165 30 5 1 0 32 0 1 59 183 18 36 1 0 4 1 0 121 1 2 49 2 0 10 1 0 616 chain 8306 chr19 59128983 + 41608869 41609017 SVA_F 1814 + 865 936 78757 15 0 1 17 78 0 38 chain 6204 chr19 59128983 + 41608901 41608979 SVA_F 1814 + 1011 1089 121032 78 chain 2606 chr19 59128983 + 41609126 41609153 SVA_F 1814 + 1138 1165 186299 27 chain 6622 chr19 59128983 + 41609191 41609309 SVA_F 1814 + 1024 1141 78757 104 1 0 13 chain 21357 chr19 59128983 + 41651414 41651691 AluSc 308 - 15 305 122658 115 0 17 141 5 1 16 chain 28417 chr19 59128983 + 41651695 41652153 L1PB2 3958 - 120 571 91512 60 5 4 23 8 6 66 1 0 62 1 0 26 0 2 23 1 0 11 8 1 7 0 7 89 19 12 40 0 4 8 chain 23597 chr19 59128983 + 41655361 41655651 AluY 311 + 20 310 112596 235 6 6 49 chain 25253 chr19 59128983 + 41659795 41660101 AluY 311 + 6 310 103459 127 2 0 177 chain 25239 chr19 59128983 + 41665419 41665711 AluSp 311 - 11 302 103540 180 1 0 111 chain 7235 chr19 59128983 + 41666271 41666364 LTR65 659 - 40 136 175860 57 0 3 36 chain 146392 chr19 59128983 + 41685627 41687746 SVA_D 2077 + 245 2077 25104 442 0 40 160 380 68 81 0 2 48 0 3 168 0 1 4 67 46 43 0 1 36 0 1 4 9 8 132 0 1 534 2 0 9 chain 958 chr19 59128983 + 41686232 41686260 SVA_D 2077 + 1159 1187 135188 28 chain 2045 chr19 59128983 + 41686260 41686303 SVA_D 2077 + 961 1004 75435 43 chain 1057 chr19 59128983 + 41686330 41686357 SVA_D 2077 + 1082 1109 126044 27 chain 18563 chr19 59128983 + 41686379 41686586 SVA_F 1814 + 893 1116 131325 55 0 15 37 0 1 115 chain 3187 chr19 59128983 + 41686910 41686977 SVA_D 2077 + 1389 1455 75435 4 9 8 54 chain 30478 chr19 59128983 + 41692478 41692870 LTR7 482 + 0 477 83473 86 0 50 88 9 41 42 0 1 82 0 2 85 chain 25527 chr19 59128983 + 41696963 41697233 AluYa5 310 - 4 274 102109 270 chain 25709 chr19 59128983 + 41705598 41705904 AluSp 311 + 11 311 101252 109 6 0 191 chain 7419 chr19 59128983 + 41733239 41733376 Tigger7 736 - 265 398 174663 28 2 0 5 19 18 31 1 0 51 chain 18544 chr19 59128983 + 41735172 41735447 AluJr 308 - 11 286 131376 5 2 0 74 21 20 67 1 4 105 chain 13601 chr19 59128983 + 41742772 41742959 MER30 238 + 31 234 145973 72 8 0 11 4 28 92 chain 29063 chr19 59128983 + 41788583 41788898 AluYa5 310 - 0 310 88705 187 5 0 123 chain 16075 chr19 59128983 + 41788898 41789183 Tigger2 2703 + 53 353 138135 55 9 20 14 25 20 105 4 8 51 3 8 19 chain 17680 chr19 59128983 + 41821249 41821537 AluSq2 311 + 21 306 133745 29 6 5 78 22 24 33 13 9 107 chain 3704 chr19 59128983 + 41872665 41872707 LTR29 598 + 466 508 211883 42 chain 3072 chr19 59128983 + 41872722 41872760 LTR24 460 - 1 39 223531 38 chain 4311 chr19 59128983 + 41939667 41939720 LTR62 707 + 0 53 203077 53 chain 9959 chr19 59128983 + 41944768 41944970 MER30 238 + 0 238 160783 16 9 38 41 12 0 24 15 40 40 10 4 35 chain 16624 chr19 59128983 + 41947194 41947426 MER1B 344 - 23 252 136602 35 24 20 110 0 1 63 chain 9995 chr19 59128983 + 41957640 41957843 L1PB1 5432 + 5241 5422 160606 40 1 0 15 3 0 6 16 6 19 2 0 5 1 0 11 7 5 22 1 0 21 1 0 13 1 0 18 chain 6364 chr19 59128983 + 41961291 41961463 LTR49-int 1717 - 373 545 182287 17 12 11 54 58 59 31 chain 38807 chr19 59128983 + 41969336 41969834 LTR2B 499 - 0 494 71010 55 1 0 6 1 0 415 0 1 8 3 0 9 chain 510248 chr19 59128983 + 41992272 41998427 L1PA4 6152 + 10 6151 6140 110 7 8 14 41 56 23 6 5 733 25 0 215 54 46 214 21 21 1754 0 1 4 1 0 748 0 1 277 0 1 221 0 1 1538 0 1 149 chain 23828 chr19 59128983 + 42009733 42010016 AluSq10 312 + 11 294 111319 283 chain 4401 chr19 59128983 + 42021529 42021842 SVA_F 1814 + 823 1272 201920 20 24 224 14 73 132 28 123 0 31 chain 14179 chr19 59128983 + 42032021 42032229 L1PA7 6471 + 6261 6470 143956 37 23 24 148 chain 38814 chr19 59128983 + 42040128 42040726 LTR76 689 - 52 682 70998 30 21 22 35 2 1 155 1 0 6 21 27 197 15 35 80 5 4 23 0 8 7 chain 164064 chr19 59128983 + 42043725 42046059 HUERS-P2-int 2744 + 15 2252 22803 16 7 1 23 1 0 31 2 0 5 1 0 53 1 0 19 3 0 10 27 21 35 166 94 4 1 0 55 9 0 50 11 9 17 1 0 29 1 10 6 3 0 84 5 7 401 1 0 21 1 0 330 0 1 205 0 1 699 chain 92317 chr19 59128983 + 42050939 42051969 LTR5A 1029 + 0 1029 38875 147 1 0 882 chain 43533 chr19 59128983 + 42087387 42087897 MER9a1 513 + 0 512 64764 446 1 3 63 chain 121133 chr19 59128983 + 42088223 42089833 THE1B-int 1605 - 0 1605 30656 8 0 2 51 0 1 49 0 1 67 1 0 217 4 7 512 5 6 233 38 21 59 6 5 236 7 12 100 5 6 12 chain 267225 chr19 59128983 + 42140160 42143445 L1PA7 6471 - 1 4390 15332 11 3 0 117 0 1 18 10 9 55 11 1117 29 0 4 529 0 1 5 1 0 86 0 1 1743 0 1 48 4 2 59 12 0 81 12 21 451 chain 8302 chr19 59128983 + 42143614 42143721 MSTB 430 + 2 119 169380 73 1 0 4 0 11 29 chain 129715 chr19 59128983 + 42158481 42160199 L1PBa 3878 + 1670 3748 28148 332 8 9 70 0 1 209 4 383 37 3 0 28 0 1 308 1 0 174 13 0 98 8 6 389 3 2 21 2 0 10 chain 495707 chr19 59128983 + 42160724 42167095 L1PA7 6471 + 54 6459 7088 18 0 1 159 26 27 24 16 16 86 2 3 20 4 6 284 21 19 696 0 11 343 0 1 71 10 9 579 0 1 73 6 7 127 1 2 687 1 2 506 63 0 265 1 0 369 0 1 14 0 1 6 1 0 53 1 0 22 21 26 89 0 2 503 0 72 73 21 22 7 1 0 121 0 1 141 2 1 59 3 0 25 17 11 111 0 1 16 0 1 322 4 10 48 0 1 82 1 2 149 chain 31480 chr19 59128983 + 42167441 42167835 THE1B-int 1605 - 18 413 81676 68 1 2 325 chain 16478 chr19 59128983 + 42167835 42168110 THE1B 368 - 83 368 136816 92 23 16 61 21 39 29 0 1 34 2 0 13 chain 105868 chr19 59128983 + 42168110 42169665 L1PB1 5432 + 3920 5422 35292 359 9 11 241 1 0 83 9 7 77 0 6 328 5 7 59 26 5 14 0 1 22 0 3 5 0 4 6 33 10 48 6 5 16 1 0 44 1 0 15 13 1 30 2 0 4 1 0 13 1 0 4 6 5 17 1 0 23 1 0 11 1 0 14 1 0 4 chain 21195 chr19 59128983 + 42170574 42170814 L1PA5 6144 - 6 246 123228 240 chain 4048 chr19 59128983 + 42178303 42178582 MER65-int 1204 - 173 453 206672 43 93 99 20 85 92 12 1 0 3 11 0 11 chain 10254 chr19 59128983 + 42193521 42193759 Tigger2 2703 + 2363 2541 159357 13 58 0 19 28 26 120 chain 4645 chr19 59128983 + 42200087 42200241 LTR54 533 + 39 200 199122 31 83 91 10 1 0 29 chain 18545 chr19 59128983 + 42240981 42241197 L1PA5 6144 + 5916 6132 131373 216 chain 65897 chr19 59128983 + 42271993 42272732 SVA_D 2077 - 0 948 50143 103 16 0 432 0 225 188 chain 4118 chr19 59128983 + 42289319 42289436 MER5A1 166 + 0 125 205678 20 37 38 26 8 15 26 chain 87018 chr19 59128983 + 42303917 42304926 LTR13 1007 + 0 1007 40774 304 1 0 77 2 3 513 2 0 110 chain 13106 chr19 59128983 + 42330469 42330666 L1M3f 2199 - 1060 1261 147822 44 17 23 13 5 3 118 chain 23147 chr19 59128983 + 42447762 42448037 AluY 311 + 0 269 114901 128 6 0 141 chain 24858 chr19 59128983 + 42458693 42459005 AluSq2 311 + 0 307 105582 136 1 0 155 2 0 11 2 0 5 chain 36959 chr19 59128983 + 42524609 42525033 MER41A 554 + 0 424 73569 424 chain 15018 chr19 59128983 + 42533557 42533746 AluSq10 312 + 80 294 141272 81 2 0 22 0 32 72 5 0 7 chain 3312 chr19 59128983 + 42537150 42537189 L1MB5 1630 + 1271 1310 218736 39 chain 22518 chr19 59128983 + 42548088 42548464 THE1D 372 + 0 372 117951 56 10 1 17 3 0 6 7 11 44 0 4 26 7 11 14 6 4 31 1 0 58 6 5 84 chain 23291 chr19 59128983 + 42747910 42748193 AluSq2 311 + 14 297 114254 93 1 0 21 0 1 168 chain 27153 chr19 59128983 + 42762911 42763215 AluYk4 311 - 7 311 95748 304 chain 37519 chr19 59128983 + 42843287 42843833 L1PA15 4387 - 99 676 72792 18 6 3 50 23 33 54 1 0 26 2 1 41 0 27 102 1 0 43 2 0 77 2 0 76 3 7 19 chain 33199 chr19 59128983 + 42918766 42919672 Tigger1 2417 + 54 650 78890 191 52 56 40 1 0 13 361 43 53 0 1 68 22 22 11 4 8 90 chain 24569 chr19 59128983 + 42942241 42942533 AluY 311 + 13 309 107148 119 0 1 132 1 4 40 chain 24103 chr19 59128983 + 42967587 42967885 AluSp 311 - 3 300 109731 27 1 0 270 chain 4398 chr19 59128983 + 43000240 43000295 U6 107 - 52 107 201950 55 chain 29477 chr19 59128983 + 43034465 43034774 AluYb8 318 + 0 309 86729 309 chain 26736 chr19 59128983 + 43046168 43046465 AluYf4 310 - 16 310 97199 126 3 0 168 chain 26895 chr19 59128983 + 43053234 43053579 THE1B 368 + 9 368 96642 35 8 23 95 1 0 206 chain 125063 chr19 59128983 + 43053579 43055481 THE1B-int 1605 + 0 1605 29376 356 326 0 75 0 25 225 31 34 884 0 1 5 chain 24472 chr19 59128983 + 43055481 43055821 THE1B 368 + 0 368 107694 44 10 39 93 1 0 16 2 0 48 1 3 125 chain 5340 chr19 59128983 + 43062201 43062264 LTR9B 643 + 0 63 191642 63 chain 49449 chr19 59128983 + 43063280 43063880 LTR10C 591 - 0 591 59425 332 1 0 115 14 6 138 chain 16576 chr19 59128983 + 43072643 43072842 L1PA5 6144 + 5946 6144 136718 101 1 0 97 chain 5101 chr19 59128983 + 43083604 43083822 LTR54B 464 - 35 242 194076 29 117 109 32 15 12 25 chain 129116 chr19 59128983 + 43102001 43103832 L1PB1 5432 - 5 1776 28288 5 3 0 11 4 3 4 1 0 13 1 0 22 1 0 23 2 0 15 1 0 4 2 0 30 14 1 16 6 5 39 6 5 10 2 1 53 2 0 8 2 0 4 2 0 8 1 0 9 1 0 24 61 14 103 1 2 32 3 4 153 0 9 57 0 1 30 0 2 79 7 0 202 0 4 14 0 1 80 0 1 339 0 1 257 4 13 60 chain 146090 chr19 59128983 + 43113818 43115463 SVA_D 2077 - 0 2066 25148 535 1 0 103 1 0 50 0 1 53 0 205 76 0 1 1 0 136 28 0 40 198 0 40 599 chain 60464 chr19 59128983 + 43115906 43116667 MER4E1 777 + 5 777 52601 13 1 2 148 0 3 176 6 5 185 1 9 231 chain 89017 chr19 59128983 + 43120405 43121973 MER61-int 3695 + 850 2053 39994 271 289 51 78 0 1 183 0 9 17 2 0 81 2 0 79 1 6 355 138 0 72 chain 91839 chr19 59128983 + 43140061 43141136 L1PA7 6471 - 188 1254 39012 216 8 0 446 2 0 14 0 1 389 chain 139263 chr19 59128983 + 43142979 43144718 SVA_C 1631 - 23 1609 26255 590 1 0 16 1 0 47 1 0 7 49 0 38 1 0 54 4 0 12 40 0 11 80 0 467 0 24 320 chain 3325 chr19 59128983 + 43143851 43143931 SVA_C 1631 - 878 955 156310 34 44 41 2 chain 48618 chr19 59128983 + 43171707 43172263 LTR14 556 - 0 556 60019 556 chain 5667 chr19 59128983 + 43177741 43177820 MADE1 96 + 0 96 188417 30 5 22 44 chain 3302 chr19 59128983 + 43177834 43177872 tRNA-Gly-GGA 38 - 0 38 218951 38 chain 79881 chr19 59128983 + 43179945 43180831 SVA_D 2077 - 0 887 43647 863 1 2 22 chain 5386 chr19 59128983 + 43181819 43181880 L1PA7 6471 - 1 62 191129 61 chain 232413 chr19 59128983 + 43181950 43184696 L1PA7 6471 - 2 2768 17179 10 3 0 306 0 1 344 0 3 116 3 4 347 6 7 152 0 9 111 0 1 111 0 6 729 0 1 508 chain 79923 chr19 59128983 + 43190507 43191520 MER11A 1151 - 0 1151 43631 75 0 6 154 0 1 61 0 33 12 0 1 249 5 4 16 0 1 94 0 1 54 0 1 87 16 12 131 1 100 58 chain 8112 chr19 59128983 + 43201980 43202078 L1PA5 6144 + 6042 6139 170427 5 1 0 92 chain 279042 chr19 59128983 + 43206398 43210698 L1PB1 5432 - 40 4290 14693 22 1 0 24 2 0 15 7 4 30 7 3 5 0 1 8 1 0 12 10 17 15 1 0 15 1 2 28 0 5 16 19 13 11 1 0 29 3 0 12 6 7 15 6 205 60 318 0 192 23 27 95 0 1 28 7 11 638 0 1 85 3 0 11 13 18 375 1 39 91 1 6 25 0 1 163 0 4 58 12 10 5 0 2 90 1 0 301 0 1 11 1 0 31 1 2 169 0 5 52 0 3 86 3 7 497 0 1 33 0 2 49 37 38 149 12 9 38 0 1 129 1 0 62 0 3 21 chain 78460 chr19 59128983 + 43212035 43212953 L1PA7 6471 - 5 921 44291 14 1 0 831 1 0 71 chain 4902 chr19 59128983 + 43216725 43216801 LTR54B 464 - 6 81 196258 26 0 1 37 1 0 7 1 0 4 chain 42193 chr19 59128983 + 43216839 43217336 MER11D 897 - 0 897 66403 224 0 401 176 1 0 96 chain 39592 chr19 59128983 + 43217336 43217796 HERVK11D-int 613 - 0 458 69901 81 1 0 243 2 1 133 chain 2815 chr19 59128983 + 43217796 43217831 MER11D 897 - 752 787 228551 35 chain 9027 chr19 59128983 + 43217831 43217940 MER11D 897 - 788 897 165459 109 chain 522872 chr19 59128983 + 43218520 43224458 L1PA3long 6157 + 2 6155 4880 5 3 0 145 12 13 259 0 78 274 0 128 1524 0 1 477 0 1 1056 0 2 360 1 0 35 0 2 948 3 7 223 0 2 613 chain 5235 chr19 59128983 + 43239413 43239484 L1MCa 1829 - 891 963 192671 39 3 4 29 chain 518059 chr19 59128983 + 43248113 43254052 L1PA3long 6157 - 0 6153 5376 276 0 1 276 0 10 355 10 11 244 0 1 105 0 1 416 0 3 864 0 1 301 7 6 966 0 1 1255 3 5 737 12 12 64 0 194 48 chain 73564 chr19 59128983 + 43255322 43256334 LTR13 1007 - 0 1007 46752 30 4 0 7 12 14 138 18 19 115 0 2 254 7 1 41 4 5 197 3 2 182 chain 528816 chr19 59128983 + 43273254 43279257 L1PA3long 6157 - 2 6153 4324 135 0 7 10 7 0 212 0 2 182 3 13 1300 0 2 1739 0 1 123 0 1 1524 0 128 447 7 10 166 1 2 147 chain 57862 chr19 59128983 + 43299483 43300136 L1PA4 6152 + 5485 6139 54055 332 0 1 321 chain 322897 chr19 59128983 + 43309613 43313152 L1PA2 6032 - 12 3552 12487 2887 0 1 652 chain 182229 chr19 59128983 + 43313152 43315166 L1HS 6032 + 459 2477 20718 1507 0 4 507 chain 38472 chr19 59128983 + 43331131 43331693 L1PBa 3878 - 1933 2489 71488 58 0 1 33 0 1 62 0 1 172 5 0 6 0 4 4 8 0 28 4 5 14 2 0 6 11 13 91 1 0 57 chain 73226 chr19 59128983 + 43333416 43334318 L1PA7 6471 - 19 921 46914 77 8 0 6 0 8 209 0 1 511 0 1 8 11 9 72 chain 42471 chr19 59128983 + 43338172 43338669 MER11D 897 - 0 897 66045 221 0 401 179 1 0 96 chain 40243 chr19 59128983 + 43338669 43339129 HERVK11D-int 613 - 0 458 68957 81 1 0 244 1 0 133 chain 51544 chr19 59128983 + 43363364 43363971 L1PA3long 6157 - 0 2282 57932 259 1 0 181 0 1676 166 chain 341569 chr19 59128983 + 43363971 43367832 L1PA3long 6157 - 2287 6153 11850 1551 0 1 583 0 1 353 0 1 318 0 2 1056 chain 73958 chr19 59128983 + 43399844 43400757 L1PA7 6471 - 5 921 46538 11 4 3 77 8 0 6 0 8 387 0 1 345 1 4 74 chain 35701 chr19 59128983 + 43404575 43405028 MER11D 897 - 0 853 75269 224 0 401 176 2 1 51 chain 14953 chr19 59128983 + 43472901 43473117 MER39B 650 - 382 604 141466 73 0 4 66 11 13 66 chain 44924 chr19 59128983 + 43474783 43475328 MER41A 554 + 0 552 63147 377 0 1 90 0 5 25 2 3 51 chain 40334 chr19 59128983 + 43475759 43476298 MER41C 542 + 0 542 68827 49 0 1 270 8 9 26 8 7 116 0 2 62 chain 41095 chr19 59128983 + 43479287 43479832 MER41A 554 - 0 554 67774 50 5 6 25 0 5 274 1 0 4 12 16 174 chain 101174 chr19 59128983 + 43501002 43502461 L1PBa 3878 - 1041 2489 36471 127 0 3 167 0 5 52 1 4 297 13 15 208 20 7 65 0 1 33 0 1 37 12 6 10 9 10 172 5 0 6 10 6 30 4 5 43 4 5 76 1 0 57 chain 77730 chr19 59128983 + 43504169 43505088 L1PA7 6471 - 6 921 44644 13 1 0 269 0 1 554 5 1 77 chain 4852 chr19 59128983 + 43508806 43508877 LTR54B 464 - 6 77 196764 26 0 1 37 1 0 7 chain 23317 chr19 59128983 + 43509144 43509417 MER11D 897 - 625 897 114119 174 1 0 98 chain 30585 chr19 59128983 + 43509417 43509786 HERVK11D-int 613 - 0 458 83233 120 1 90 115 1 0 6 0 1 126 chain 12278 chr19 59128983 + 43509786 43509931 MER11D 897 - 752 897 151085 145 chain 57185 chr19 59128983 + 43549463 43550125 L1PA4 6152 + 5482 6143 54416 319 1 0 342 chain 139688 chr19 59128983 + 43555277 43556769 L1HS 6032 + 4540 6032 26192 1492 chain 75794 chr19 59128983 + 43560630 43561551 L1PA7 6471 - 1 921 45598 6 7 0 459 0 2 29 0 1 345 1 4 74 chain 3801 chr19 59128983 + 43565267 43565343 LTR54B 464 - 6 81 210382 26 7 8 33 1 0 4 1 0 4 chain 40704 chr19 59128983 + 43565381 43565878 MER11D 897 - 0 897 68297 228 7 408 163 1 0 98 chain 40008 chr19 59128983 + 43565878 43566337 HERVK11D-int 613 - 0 458 69309 325 1 0 133 chain 13042 chr19 59128983 + 43566337 43566482 MER11D 897 - 752 897 148071 145 chain 79454 chr19 59128983 + 43591397 43592398 LTR13 1007 - 0 1007 43847 31 3 1 153 6 7 127 0 6 296 4 5 381 chain 57554 chr19 59128983 + 43610255 43610914 L1PA4 6152 + 5484 6143 54207 659 chain 9559 chr19 59128983 + 43622099 43622209 L1PA5 6144 + 6034 6144 162782 110 chain 44493 chr19 59128983 + 43630050 43630595 MER41A 554 + 0 552 63586 377 0 1 87 1 6 27 1 2 52 chain 42411 chr19 59128983 + 43639333 43639878 MER41A 554 - 0 554 66134 53 2 3 25 0 5 290 1 4 174 chain 107633 chr19 59128983 + 43660953 43662404 L1PBa 3878 - 1025 2481 34819 98 0 1 5 8 7 32 0 3 168 0 5 5 0 1 4 1 0 41 1 4 592 0 1 33 0 1 62 0 1 172 5 0 6 10 6 30 4 5 124 1 0 49 chain 78302 chr19 59128983 + 43664116 43665037 L1PA7 6471 - 4 921 44374 15 1 0 831 3 0 71 chain 3910 chr19 59128983 + 43668784 43668844 LTR54B 464 - 6 67 208711 25 3 4 32 chain 40872 chr19 59128983 + 43668898 43669395 MER11D 897 - 0 897 68059 224 0 401 176 1 0 96 chain 39716 chr19 59128983 + 43669395 43669854 HERVK11D-int 613 - 0 458 69733 324 2 1 133 chain 12239 chr19 59128983 + 43669854 43669999 MER11D 897 - 752 897 151261 145 chain 4957 chr19 59128983 + 43685505 43685608 L1MCa 1829 - 889 995 195606 29 15 16 29 7 9 23 chain 74550 chr19 59128983 + 43695351 43696347 LTR13 1007 - 0 1007 46237 31 22 20 140 0 1 123 0 10 296 28 29 43 0 1 313 chain 75648 chr19 59128983 + 43714441 43715434 LTR13 1007 - 0 1007 45687 31 23 21 42 0 5 95 0 1 125 1 5 148 0 4 144 4 5 231 0 1 149 chain 121316 chr19 59128983 + 43725088 43726647 LTR12C 1709 - 0 1709 30594 258 8 0 74 0 2 147 0 4 54 1 0 9 5 52 18 4 8 12 6 116 118 1 2 319 34 16 18 1 9 276 0 1 196 chain 2454 chr19 59128983 + 43727957 43728278 L1MCa 1829 - 1572 1797 233670 20 269 175 25 2 0 5 chain 55714 chr19 59128983 + 43735335 43735993 L1PA4 6152 + 5485 6143 55295 658 chain 535432 chr19 59128983 + 43746213 43752251 L1PA3long 6157 - 5 6153 3528 563 0 1 280 0 1 1704 0 1 1002 0 3 44 0 1 1333 30 4 311 10 138 611 1 2 149 chain 4852 chr19 59128983 + 43754331 43754402 LTR54B 464 - 6 77 196763 26 0 1 37 1 0 7 chain 41515 chr19 59128983 + 43754445 43754941 MER11D 897 - 0 897 67261 224 0 401 176 1 0 78 0 1 17 chain 39034 chr19 59128983 + 43754947 43755399 HERVK11D-int 613 - 7 458 70686 320 1 0 131 chain 11453 chr19 59128983 + 43755399 43755544 MER11D 897 - 752 897 154490 145 chain 6098 chr19 59128983 + 43768503 43768606 L1MCa 1829 - 889 995 184426 41 3 4 29 7 9 23 chain 10968 chr19 59128983 + 43796355 43796480 L1PA4 6152 + 6018 6143 156324 125 chain 32887 chr19 59128983 + 43818163 43818625 LTR2 463 + 0 462 79384 44 7 6 160 23 23 129 12 13 87 chain 36504 chr19 59128983 + 43821864 43822424 MER57-int 2662 - 1539 2098 74233 83 8 9 40 6 0 45 1 0 69 1 9 179 49 46 79 chain 28875 chr19 59128983 + 43827672 43828096 LTR7Y 441 - 10 441 89561 187 68 84 57 9 0 103 chain 292724 chr19 59128983 + 43829354 43833102 HERVH-int 3825 - 0 3825 13842 225 0 2 87 0 2 171 8 218 39 9 11 1045 0 10 28 1 0 271 8 35 543 0 13 344 0 3 13 0 2 12 1 2 50 2 1 42 1 0 25 3 0 9 4 3 15 71 0 24 1 0 10 1 0 26 137 11 310 0 11 212 chain 4569 chr19 59128983 + 43832310 43832375 HERVH-int 3825 - 3142 3203 188848 26 1 0 26 3 0 9 chain 2061 chr19 59128983 + 43832558 43832580 HERVH-int 3825 - 3331 3353 223078 22 chain 29660 chr19 59128983 + 43833102 43833536 LTR7Y 441 - 0 441 86025 197 68 84 57 9 0 103 chain 20500 chr19 59128983 + 43907496 43907749 L1PA6 6164 + 5894 6162 125629 77 0 21 164 6 0 6 chain 23332 chr19 59128983 + 43917377 43917663 AluY 311 + 0 297 114011 43 1 7 227 0 5 15 chain 82412 chr19 59128983 + 43940946 43941911 LTR13A 966 + 0 966 42580 68 2 1 84 1 4 513 2 0 25 0 1 270 chain 14433 chr19 59128983 + 43948893 43949080 MER4A1 472 - 286 472 143099 148 2 1 37 chain 10791 chr19 59128983 + 43952477 43952674 MER66B 489 + 46 261 157032 23 19 37 79 26 26 50 chain 6037 chr19 59128983 + 43955731 43955803 THE1C 375 + 242 314 184917 72 chain 23399 chr19 59128983 + 43979947 43980235 AluSc 308 - 10 297 113649 189 2 1 97 chain 23087 chr19 59128983 + 44004117 44004384 AluSp 311 + 8 275 115209 267 chain 33677 chr19 59128983 + 44014959 44015444 MER1A 529 + 30 529 78135 32 35 35 298 0 9 35 21 26 64 chain 3471 chr19 59128983 + 44016747 44016785 THE1B-int 1605 + 382 420 215807 38 chain 10388 chr19 59128983 + 44018173 44018289 THE1B-int 1605 + 1474 1590 158753 116 chain 26546 chr19 59128983 + 44022616 44022926 AluY 311 + 0 305 97856 126 4 0 150 2 1 28 chain 64029 chr19 59128983 + 44052232 44052938 SVA_C 1631 + 922 1628 50997 28 2 0 31 0 1 21 0 1 624 chain 30571 chr19 59128983 + 44215384 44215772 Tigger1 2417 - 347 738 83265 102 0 3 286 chain 3112 chr19 59128983 + 44225920 44225957 MER73 639 + 593 630 222696 37 chain 13960 chr19 59128983 + 44264209 44264364 L1PA4 6152 + 5998 6152 144703 149 1 0 5 chain 3115 chr19 59128983 + 44277492 44277527 MIRc 230 - 99 134 222645 35 chain 27112 chr19 59128983 + 44296166 44296886 HSMAR1 1287 + 0 1259 95893 87 309 0 117 19 12 35 24 879 129 chain 16049 chr19 59128983 + 44310846 44311054 MER1A 529 + 320 529 138217 122 2 3 84 chain 18198 chr19 59128983 + 44320847 44321211 THE1B 368 + 0 361 132335 108 16 17 52 38 37 13 27 25 50 18 17 42 chain 124922 chr19 59128983 + 44327964 44330068 L1PB1 5432 + 3603 5427 29420 16 4 16 96 6 1 53 0 1 237 0 12 33 0 5 94 0 4 155 0 1 129 4 9 144 0 4 13 1 0 163 10 17 165 0 4 20 1 2 5 1 0 50 6 7 44 16 14 21 1 0 9 1 0 4 0 1 4 316 14 50 2 1 15 1 0 45 1 0 15 1 0 4 2 0 8 9 0 16 27 22 24 1 0 21 1 0 13 1 0 18 2 0 5 chain 26838 chr19 59128983 + 44357739 44358050 AluYk4 311 - 1 311 96848 184 2 0 47 0 1 78 chain 251173 chr19 59128983 + 44368646 44371452 L1HS 6032 - 3216 6020 16162 2210 2 1 291 2 1 57 2 1 182 0 1 60 chain 87941 chr19 59128983 + 44381742 44382702 L1PA3long 6157 - 5 967 40399 333 0 1 434 1 2 192 chain 37366 chr19 59128983 + 44398198 44398724 L1PA8 5853 - 0 522 73008 32 5 6 52 9 8 14 2 1 13 1 0 7 0 1 26 3 1 11 1 0 27 0 1 45 2 0 44 1 0 137 0 2 94 chain 8131 chr19 59128983 + 44441814 44442138 MER4D 903 + 603 888 170323 40 179 140 25 12 11 42 1 2 25 chain 5484 chr19 59128983 + 44461624 44461691 MER57B2 428 - 361 428 190185 67 chain 5877 chr19 59128983 + 44466587 44466787 L1MB8 1703 - 197 398 186406 56 113 114 31 chain 332588 chr19 59128983 + 44474395 44478884 L1PA11 4918 + 3 4507 12105 35 5 4 18 24 19 36 0 2 11 2 0 52 1 0 288 0 3 32 4 1 84 0 1 150 1 5 25 4 0 112 7 13 31 9 12 339 0 2 5 2 0 126 8 0 38 0 5 35 2 0 116 0 4 137 0 4 27 0 1 37 0 1 29 0 1 27 30 0 216 0 5 13 0 4 11 0 4 34 0 4 51 6 7 27 1 0 6 9 18 33 1 5 216 0 4 9 8 2 347 0 4 228 19 12 77 0 4 137 2 3 177 0 4 45 0 1 87 4 0 59 1 0 276 5 3 12 0 5 19 0 4 289 0 3 57 6 5 8 1 0 21 0 1 47 2 0 14 1 0 18 chain 25697 chr19 59128983 + 44486597 44486905 AluY 311 + 0 311 101296 70 0 3 238 chain 25452 chr19 59128983 + 44504251 44504534 L1PA6 6164 - 185 468 102447 283 chain 6098 chr19 59128983 + 44505095 44505168 THE1A 353 + 4 80 184431 64 0 3 9 chain 34421 chr19 59128983 + 44538372 44538787 LTR3 431 - 9 425 77028 373 0 1 42 chain 6804 chr19 59128983 + 44551034 44551117 L1PA8 5853 + 5768 5853 178922 26 0 2 57 chain 24240 chr19 59128983 + 44560386 44560700 AluY 311 + 0 298 108995 40 3 1 85 15 0 23 0 1 148 chain 13453 chr19 59128983 + 44585908 44586074 THE1C 375 - 205 375 146519 146 0 4 20 chain 25416 chr19 59128983 + 44609917 44610337 L1PB3 3668 - 86 484 102612 13 7 3 37 3 1 46 23 7 73 15 14 47 0 4 49 1 0 48 3 0 15 8 9 32 chain 7063 chr19 59128983 + 44619618 44619729 L1MB8 1703 - 194 303 177000 74 12 10 25 chain 410233 chr19 59128983 + 44625336 44630561 L1PB1 5432 - 155 5338 9794 40 1 0 16 2 1 50 3 1 10 17 12 9 1 0 24 3 0 5 4 6 5 1 0 45 2 1 5 0 1 356 1 3 59 4 0 417 1 0 194 1 0 54 0 1 229 2 4 294 0 3 146 1 4 563 0 3 5 3 0 215 23 0 761 0 1 107 8 9 214 3 0 7 21 7 138 0 4 844 1 0 310 chain 20192 chr19 59128983 + 44677628 44677926 AluY 311 + 0 300 126552 39 24 20 73 6 7 51 0 3 82 0 2 23 chain 5754 chr19 59128983 + 44686386 44686484 MER20 218 - 25 128 187605 19 21 26 58 chain 3380 chr19 59128983 + 44701052 44701089 MLT2F 649 + 611 648 217478 37 chain 131074 chr19 59128983 + 44707473 44708984 SVA_B 1603 + 0 1603 27841 10 2 0 12 0 19 32 5 0 669 1 0 4 4 5 178 0 80 594 chain 60309 chr19 59128983 + 44723934 44724608 L1PA4 6152 - 0 678 52678 390 0 1 279 0 3 5 chain 45545 chr19 59128983 + 44724815 44725328 L1PA3long 6157 - 0 517 62464 17 0 2 253 0 2 243 chain 3828 chr19 59128983 + 44725328 44725371 L1PA4 6152 + 5807 5850 206005 43 chain 373109 chr19 59128983 + 44726717 44731072 L1P1 4361 - 20 4360 10988 12 2 1 23 1 0 155 1 0 1205 0 1 25 1 0 137 4 0 357 0 3 115 1 0 761 0 1 392 0 3 322 17 0 104 1 0 141 10 9 10 0 4 123 0 1 435 chain 317459 chr19 59128983 + 44754181 44758058 L1PA7 6471 + 2581 6470 12704 55 1 2 44 9 13 140 1 0 261 0 4 403 1 0 333 2 0 206 7 6 184 1 0 444 0 4 197 8 5 109 0 1 431 15 0 9 9 24 19 0 5 131 4 0 14 1 0 511 0 1 277 0 4 38 0 2 12 chain 16153 chr19 59128983 + 44769322 44769965 L1PB1 5432 - 143 421 137889 9 1 0 40 11 10 9 2 1 52 2 0 7 9 5 10 1 0 8 1 0 24 1 0 9 354 1 93 chain 10633 chr19 59128983 + 44784551 44784817 THE1B 368 + 172 356 157684 36 85 3 59 0 1 30 0 1 4 24 22 28 chain 2401 chr19 59128983 + 44784646 44784671 THE1B 368 + 182 207 234209 25 chain 41567 chr19 59128983 + 44787369 44787919 LTR14 556 - 0 556 67201 110 1 2 19 14 15 136 3 7 267 chain 4930 chr19 59128983 + 44811410 44811498 Tigger2a 444 - 70 156 195940 24 18 12 34 0 4 12 chain 28559 chr19 59128983 + 44813251 44813557 AluYa5 310 - 5 310 90925 133 1 0 172 chain 9544 chr19 59128983 + 44834300 44834477 Tigger4a 237 + 26 228 162865 14 15 31 36 4 12 58 13 14 37 chain 4107 chr19 59128983 + 44835202 44835247 tRNA-Met 55 - 10 55 205827 45 chain 21441 chr19 59128983 + 44862082 44862319 AluY 311 + 60 298 122366 72 0 1 165 chain 6419 chr19 59128983 + 44879095 44879655 L1MD1 2063 - 34 457 181865 17 12 9 13 187 83 32 87 57 44 139 139 29 chain 17444 chr19 59128983 + 44881966 44882156 L1PA4 6152 - 325 515 134393 190 chain 29885 chr19 59128983 + 44882156 44882506 L1PA4 6152 + 5804 6152 85146 191 8 1 145 0 5 6 chain 67345 chr19 59128983 + 44897827 44898577 L1PA4 6152 + 5394 6143 49510 424 1 0 325 chain 128847 chr19 59128983 + 44909064 44911431 L1PB1 5432 + 3497 5404 28349 150 0 1 82 0 6 40 2 0 84 0 1 365 339 0 112 0 6 196 0 1 85 3 0 125 1 0 4 0 1 41 0 1 6 1 0 210 0 2 13 239 133 6 2 0 49 7 6 13 1 0 45 1 0 7 43 28 11 2 0 5 1 0 14 2 0 24 1 0 22 1 0 12 chain 68982 chr19 59128983 + 44924100 44925027 MER11C 1089 + 0 1052 48820 55 0 91 74 0 5 34 0 3 57 4 21 250 8 9 119 0 1 56 1 9 148 1 0 54 1 0 11 0 1 54 chain 240990 chr19 59128983 + 44925116 44928144 L1PA7 6471 - 69 3104 16724 784 3 6 381 0 4 30 0 1 17 0 1 149 3 0 155 3 0 196 0 4 351 6 8 40 4 1 41 0 1 355 6 5 42 9 11 124 0 1 73 16 16 41 19 18 49 1 0 130 chain 35443 chr19 59128983 + 44936634 44937025 L1PA4 6152 + 5761 6151 75627 137 1 0 253 chain 24076 chr19 59128983 + 44964802 44965095 AluY 311 + 11 296 109890 112 12 4 169 chain 2925 chr19 59128983 + 44969850 44969883 MLT1H 522 - 326 359 226588 33 chain 45363 chr19 59128983 + 44973367 44973940 THE1B-int 1605 - 13 593 62643 45 0 1 309 1 7 218 chain 15136 chr19 59128983 + 44991710 44991921 MER41B 635 + 295 523 140958 15 2 18 180 1 2 13 chain 127755 chr19 59128983 + 44992353 44993844 SVA_D 2077 + 7 2077 28631 13 13 0 15 3 1 232 1 2 324 0 116 177 3 399 28 0 1 30 0 2 4 0 1 36 0 1 4 12 11 64 0 77 532 chain 23615 chr19 59128983 + 45021483 45021783 AluSc8 310 + 10 309 112499 18 4 0 104 0 3 174 chain 3062 chr19 59128983 + 45029789 45029826 MIRb 242 + 96 133 223771 37 chain 23398 chr19 59128983 + 45039415 45039738 THE1B 368 - 0 351 113661 31 9 22 146 1 0 102 8 23 5 0 1 21 chain 2779 chr19 59128983 + 45039758 45039818 MLT1E2 623 - 513 572 229056 26 19 18 15 chain 36106 chr19 59128983 + 45054001 45055128 L1PB1 5432 + 4847 5420 74759 256 1 2 9 525 0 14 7 6 13 16 11 11 3 1 50 2 1 16 1 0 43 1 0 16 1 0 4 2 0 11 9 0 16 24 19 24 1 0 21 1 0 29 chain 111544 chr19 59128983 + 45065649 45067001 LTR12C 1709 - 0 1709 33800 481 0 4 107 9 325 279 12 49 150 1 0 4 0 1 194 3 6 8 3 0 101 chain 26961 chr19 59128983 + 45067123 45067726 L1PB1 5432 + 4929 5427 96404 174 97 11 24 0 2 6 1 0 12 5 1 8 2 0 53 2 1 10 7 6 44 1 0 15 6 0 6 15 6 19 2 0 5 1 0 4 23 21 13 1 0 22 0 12 18 2 0 5 chain 36800 chr19 59128983 + 45076938 45077413 LTR15 485 + 0 478 73799 107 0 1 16 4 0 25 0 2 25 0 2 98 0 4 157 1 0 5 2 0 14 0 1 21 chain 26199 chr19 59128983 + 45078209 45078643 LTR3A 482 - 62 482 99207 13 1 0 141 76 64 86 0 1 5 0 1 84 1 0 13 2 0 12 chain 23445 chr19 59128983 + 45078662 45078967 LTR45B 484 - 158 468 113405 87 3 0 105 0 1 48 0 7 62 chain 22141 chr19 59128983 + 45093058 45093442 MSTC 436 + 27 425 119615 76 1 0 3 4 0 6 0 5 24 1 9 28 22 23 34 9 14 14 11 15 141 4 0 6 chain 35952 chr19 59128983 + 45093797 45094260 LTR2 463 + 0 463 74954 210 23 23 230 chain 10439 chr19 59128983 + 45094643 45094815 L1PA8 5853 + 5658 5828 158532 17 8 7 9 1 0 9 6 8 32 2 1 19 1 0 68 chain 76450 chr19 59128983 + 45097417 45098385 LTR5_Hs 974 + 0 974 45236 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 2885 chr19 59128983 + 45109834 45109867 LTR45B 484 + 281 314 227272 33 chain 25269 chr19 59128983 + 45118321 45118603 AluY 311 + 4 287 103372 128 0 1 154 chain 39354 chr19 59128983 + 45134804 45135295 MER9a2 513 - 0 506 70250 62 0 6 92 0 12 322 3 0 12 chain 188696 chr19 59128983 + 45135295 45137686 HERVK9-int 4720 - 551 4714 20174 141 0 1 226 0 5 480 0 1 13 13 651 231 0 924 22 6 22 88 0 185 50 0 21 235 0 1 6 7 6 698 1 0 30 2 1 7 1 0 66 13 9 13 21 10 5 1 0 15 chain 5303 chr19 59128983 + 45137950 45138009 MER9a2 513 - 453 512 191996 59 chain 9817 chr19 59128983 + 45140853 45140977 MER51E 476 - 351 476 161513 67 0 1 57 chain 10750 chr19 59128983 + 45157970 45158123 MER30 238 + 70 236 157197 40 5 21 58 4 1 46 chain 2696 chr19 59128983 + 45163523 45163632 MIR 256 + 29 139 230260 15 67 68 27 chain 23519 chr19 59128983 + 45174091 45174382 AluSp 311 + 6 302 113020 168 1 6 122 chain 3276 chr19 59128983 + 45194440 45194481 MIR 256 - 112 163 219418 33 0 10 8 chain 2897 chr19 59128983 + 45275930 45275963 L1MB8 1703 - 195 228 227083 33 chain 3579 chr19 59128983 + 45362638 45362702 MIR 256 - 134 214 213992 27 15 31 22 chain 7757 chr19 59128983 + 45386347 45386463 LTR23 429 - 152 266 172559 9 3 0 18 4 5 82 chain 25738 chr19 59128983 + 45402119 45402407 AluYc3 301 + 0 289 101127 120 0 1 168 chain 23187 chr19 59128983 + 45404717 45405005 AluY 311 + 0 294 114739 57 0 6 68 3 0 43 0 3 117 chain 20856 chr19 59128983 + 45416596 45416865 AluJo 314 - 41 313 124439 9 1 0 131 4 8 124 chain 34426 chr19 59128983 + 45417228 45417684 LTR2 463 + 0 463 77022 107 0 1 254 33 35 10 0 4 52 chain 23691 chr19 59128983 + 45418569 45418854 AluYc 301 - 4 301 112076 24 3 0 104 1 14 39 0 2 114 chain 78807 chr19 59128983 + 45424391 45425280 SVA_D 2077 - 21 1573 44142 427 1 0 154 0 624 250 3 43 54 chain 23205 chr19 59128983 + 45432182 45432519 AluSp 311 + 14 310 114662 33 32 0 6 6 0 246 3 0 11 chain 22246 chr19 59128983 + 45433218 45433503 AluSp 311 + 11 289 119135 109 5 0 12 2 0 157 chain 28045 chr19 59128983 + 45441441 45441751 AluYa5 310 - 5 310 92839 6 4 0 167 1 0 132 chain 22647 chr19 59128983 + 45544216 45544520 AluYf4 310 + 18 306 117350 100 0 1 86 15 7 85 9 0 9 chain 6230 chr19 59128983 + 45550717 45550804 U6 107 + 2 92 183316 40 3 6 44 chain 23423 chr19 59128983 + 45558811 45559098 AluSp 311 + 1 289 113511 54 1 2 232 chain 24329 chr19 59128983 + 45571977 45572269 AluY 311 + 3 304 108491 83 0 6 23 0 1 16 0 1 61 0 1 109 chain 3173 chr19 59128983 + 45630804 45630854 Tigger3a 397 - 327 376 221512 18 5 4 27 chain 2945 chr19 59128983 + 45631546 45631641 MER58A 224 + 51 147 226230 20 42 43 5 1 0 9 0 1 18 chain 10058 chr19 59128983 + 45670581 45670714 MER6A 605 - 99 233 160283 37 0 1 96 chain 20156 chr19 59128983 + 45692578 45693605 L1M1 2793 - 1210 1774 126655 102 728 263 33 6 5 64 0 1 54 0 2 40 chain 7295 chr19 59128983 + 45701853 45701946 L1M1 2793 - 1130 1225 175475 56 0 2 37 chain 9051 chr19 59128983 + 45705509 45705634 THE1B 368 + 244 368 165313 62 9 8 54 chain 2853 chr19 59128983 + 45727321 45727359 L2a 937 - 245 282 227802 32 1 0 5 chain 24623 chr19 59128983 + 45774038 45774316 AluSp 311 - 22 300 106866 278 chain 40035 chr19 59128983 + 45893487 45893975 LTR2C 499 + 3 499 69269 79 2 1 326 4 12 19 0 1 58 chain 29065 chr19 59128983 + 45904023 45904333 AluYa5 310 - 0 310 88697 310 chain 23921 chr19 59128983 + 45930585 45930893 AluSg7 307 + 0 300 110803 50 5 4 69 1 0 3 4 0 160 2 0 14 chain 4972 chr19 59128983 + 46042510 46042572 L1MB8 1703 + 1162 1224 195445 62 chain 24269 chr19 59128983 + 46090155 46090444 AluY 311 + 0 296 108854 21 0 8 94 2 0 9 0 1 163 chain 24635 chr19 59128983 + 46113373 46113666 AluSc5 308 + 0 292 106807 110 1 0 182 chain 24273 chr19 59128983 + 46138108 46138396 AluSc5 308 - 10 298 108827 288 chain 149880 chr19 59128983 + 46150778 46152482 SVA_D 2077 + 6 2077 24624 27 17 13 393 0 116 145 0 40 136 0 82 31 1 3 44 0 2 175 0 2 42 0 78 17 0 49 676 chain 7861 chr19 59128983 + 46166974 46167075 L1PA8 5853 + 5752 5852 171927 10 1 0 90 chain 2561 chr19 59128983 + 46198032 46198078 MIR 256 + 91 139 232353 18 6 8 22 chain 25866 chr19 59128983 + 46306192 46306485 AluY 311 + 8 301 100581 293 chain 10275 chr19 59128983 + 46337787 46337929 Tigger4b 360 + 216 360 159254 77 11 13 54 chain 22688 chr19 59128983 + 46342822 46343118 AluY 311 + 0 311 117129 44 0 16 63 3 0 9 0 1 10 3 4 164 chain 4090 chr19 59128983 + 46362505 46362553 HY1 111 + 63 111 206076 48 chain 22754 chr19 59128983 + 46372198 46372489 AluSp 311 - 23 303 116810 23 0 1 17 0 1 190 13 0 48 chain 29486 chr19 59128983 + 46399873 46400182 AluYb8 318 - 9 318 86687 309 chain 24082 chr19 59128983 + 46429708 46429993 AluSg4 309 - 23 309 109860 27 1 2 257 chain 4429 chr19 59128983 + 46448140 46448198 L1MB8 1703 + 1526 1585 201593 14 0 1 44 chain 20794 chr19 59128983 + 46466350 46466607 AluSc 308 + 0 251 124624 41 6 0 210 chain 3666 chr19 59128983 + 46487133 46487175 MIR 256 + 79 121 212449 42 chain 22314 chr19 59128983 + 46523363 46523644 AluSp 311 - 9 288 118851 174 1 0 79 2 1 25 chain 6050 chr19 59128983 + 46540526 46540620 L1MCa 1829 + 1075 1169 184808 18 14 14 62 chain 172954 chr19 59128983 + 46541149 46543030 L1PA2 6032 - 0 1883 21713 43 0 3 915 1 0 922 chain 180884 chr19 59128983 + 46552868 46555783 L1PBa 3878 + 29 2577 20910 7 1 0 4 1 0 7 4 1 12 48 40 45 68 18 50 1 0 6 0 1 4 14 12 260 2 1 27 9 8 37 1 0 5 0 1 19 1 0 175 0 2 845 351 39 105 5 4 202 0 2 266 0 3 11 14 11 29 9 0 153 0 4 86 0 16 25 1 0 5 chain 10719 chr19 59128983 + 46560754 46560881 MER41A 554 - 86 213 157329 127 chain 112833 chr19 59128983 + 46562880 46564543 PABL_A-int 1935 - 41 1685 33427 7 1 0 7 2 0 9 6 1 9 1 0 6 1 0 16 8 7 107 2 1 62 0 2 54 5 4 76 1 0 11 2 0 96 0 1 4 2 1 138 1 20 82 1 0 83 5 3 18 1 0 39 1 0 152 0 1 108 0 1 154 4 0 9 0 4 5 2 0 36 1 0 8 12 11 60 6 5 63 25 14 31 4 1 28 1 0 10 2 0 54 1 2 23 chain 262004 chr19 59128983 + 46599222 46604455 L1PA10 4194 - 44 4019 15585 34 3 0 30 5 4 569 1 0 5 0 1 11 1 2 53 0 3 37 1 0 18 21 20 174 0 3 106 0 1 176 11 11 95 7 6 85 0 5 41 6 7 31 12 12 70 0 4 144 0 1 117 0 1 4 2 1 42 1 5 203 1 2 16 0 1 306 0 1 8 9 2 47 316 0 65 0 2 397 2 3 267 1317 413 39 0 8 36 18 13 12 1 0 9 5 0 15 1 0 21 2 0 21 1 0 8 45 19 16 2 0 21 1 0 8 1 0 10 2 0 12 11 7 6 2 0 6 3 0 11 5 0 15 chain 38656 chr19 59128983 + 46605461 46605991 LTR7B 505 - 5 484 71218 168 1 0 80 0 21 23 71 0 187 chain 40353 chr19 59128983 + 46612341 46613232 LTR7B 505 - 0 505 68805 229 303 0 24 0 21 23 104 0 208 chain 11662 chr19 59128983 + 46619340 46619473 L1PA5 6144 - 0 133 153631 133 chain 8587 chr19 59128983 + 46624916 46625105 MER83 447 - 43 206 167803 25 28 0 28 38 40 70 chain 97469 chr19 59128983 + 46631163 46632564 L1PREC2 3366 - 715 2105 37434 22 1 0 170 7 6 13 3 10 38 26 0 57 11 13 314 5 4 148 1 2 23 9 10 12 1 0 308 0 2 86 0 3 18 16 16 35 9 14 17 1 0 11 1 0 38 chain 6326 chr19 59128983 + 46635218 46635299 MER75B 242 - 125 206 182586 81 chain 21078 chr19 59128983 + 46657100 46657435 L1PA8 5853 - 0 338 123627 46 0 10 37 1 0 19 2 1 25 28 27 9 4 3 68 3 1 43 1 0 49 chain 73455 chr19 59128983 + 46669444 46670494 MER11C 1089 - 26 1089 46811 25 0 1 117 1 0 56 0 1 118 10 11 35 1 0 4 1 5 112 47 43 148 2 1 69 23 27 34 0 9 247 chain 7693 chr19 59128983 + 46681058 46681249 MER4D 903 + 2 190 172972 17 31 32 16 0 1 5 1 0 17 5 3 29 20 19 4 1 0 45 chain 78688 chr19 59128983 + 46687527 46688483 L1PA7 6471 - 1 976 44195 4 1 0 157 0 1 156 3 15 313 1 10 192 2 0 127 chain 8014 chr19 59128983 + 46691273 46691368 MER85 139 - 44 139 170967 95 chain 4332 chr19 59128983 + 46770691 46770786 L1MD 993 - 258 347 202798 42 32 26 21 chain 28679 chr19 59128983 + 46776454 46776860 LTR7 482 - 9 482 90411 165 3 1 21 1 0 20 10 42 109 8 46 69 chain 290298 chr19 59128983 + 46778073 46781690 HERVH-int 3825 - 0 3825 14000 95 0 1 311 9 10 313 0 3 281 0 5 388 5 4 5 0 1 108 0 1 200 34 39 280 0 1 555 16 0 38 7 0 36 0 1 370 1 0 10 0 212 71 24 0 8 1 27 82 6 7 18 26 25 319 chain 29987 chr19 59128983 + 46781700 46782109 LTR7 482 - 5 482 84843 169 3 1 43 0 31 8 0 1 109 9 47 68 chain 24523 chr19 59128983 + 46791209 46791502 AluSp 311 + 8 300 107420 34 1 0 258 chain 2601 chr19 59128983 + 46799059 46799086 MLT1K 546 - 352 379 231681 27 chain 21199 chr19 59128983 + 46866364 46866593 AluYa5 310 + 81 310 123219 229 chain 3238 chr19 59128983 + 46897968 46898002 MIR 256 - 117 151 220268 34 chain 5640 chr19 59128983 + 46902218 46902278 L1PA4 6152 + 6081 6141 188653 60 chain 24485 chr19 59128983 + 46917967 46918267 AluSc8 310 + 0 297 107631 78 6 1 47 0 2 169 chain 13370 chr19 59128983 + 46946190 46946377 MER51A 677 + 459 661 146817 57 1 0 50 1 0 4 1 2 15 0 16 58 chain 10803 chr19 59128983 + 46948940 46949077 MER30 238 - 0 144 156970 115 4 11 18 chain 23282 chr19 59128983 + 46949095 46949387 AluSp 311 - 17 311 114288 86 1 2 188 1 2 16 chain 27987 chr19 59128983 + 46952732 46953150 LOR1b 457 - 0 457 93047 60 3 24 40 5 8 183 22 26 22 0 1 35 1 0 18 0 11 29 chain 28700 chr19 59128983 + 46956107 46956413 AluYa5 310 + 5 310 90329 127 1 0 178 chain 28159 chr19 59128983 + 46975439 46975921 LTR46 455 + 0 455 92428 17 1 0 13 0 2 4 1 0 50 2 1 60 40 0 41 0 4 102 17 0 8 0 16 38 25 32 34 0 4 29 chain 15068 chr19 59128983 + 46977346 46977592 MER83B 357 + 58 317 141118 50 8 9 14 10 19 16 15 19 26 1 0 106 chain 25011 chr19 59128983 + 46978139 46978449 AluY 311 + 0 304 104728 4 0 1 6 0 2 49 3 4 62 10 0 176 chain 7986 chr19 59128983 + 46992384 46992528 AluJo 314 + 93 235 171135 32 3 0 5 11 19 31 4 0 10 3 0 45 chain 6010 chr19 59128983 + 47014892 47015067 MER57A1 433 + 0 258 118537 109 0 83 66 chain 23191 chr19 59128983 + 47015124 47015397 AluSc 308 - 34 308 114716 78 0 1 195 chain 4430 chr19 59128983 + 47015415 47015544 MER57A1 433 + 291 423 118537 102 0 3 27 chain 7102 chr19 59128983 + 47022553 47022650 MLT1B 390 - 271 367 176742 32 2 1 63 chain 10046 chr19 59128983 + 47043640 47043845 MLT1B 390 - 0 222 160342 19 6 21 38 43 44 76 4 5 19 chain 20389 chr19 59128983 + 47050475 47050823 THE1D 372 + 18 370 125933 33 9 0 18 15 17 52 0 10 18 42 44 15 1 0 145 chain 5227 chr19 59128983 + 47051691 47051752 MLT1B 390 + 299 360 192759 61 chain 19779 chr19 59128983 + 47053179 47053482 L1PB4 2604 - 64 330 127874 157 42 1 6 0 4 98 chain 14466 chr19 59128983 + 47063115 47063283 THE1B 368 - 200 368 143001 168 chain 37278 chr19 59128983 + 47072295 47072757 L1MA3 4352 + 1875 2336 73115 438 1 0 23 chain 6480 chr19 59128983 + 47074717 47074841 MER53 195 + 37 165 181390 65 31 35 28 chain 10150 chr19 59128983 + 47077907 47078068 THE1C 375 + 0 167 159848 15 2 0 32 16 24 96 chain 37072 chr19 59128983 + 47095574 47096400 MLT2A2 560 - 0 560 73427 99 1 10 29 0 1 5 0 17 29 309 0 34 0 9 57 0 3 109 7 11 147 chain 20456 chr19 59128983 + 47096751 47097043 L1MA4 2864 - 862 1155 125740 164 14 0 8 4 19 102 chain 7825 chr19 59128983 + 47147665 47147792 THE1B 368 + 243 368 172159 63 8 7 15 8 7 33 chain 11947 chr19 59128983 + 47169645 47169937 THE1C 375 + 20 336 152418 22 48 57 10 0 14 49 64 65 99 chain 5718 chr19 59128983 + 47216611 47216683 HY1 111 + 39 111 187943 72 chain 24966 chr19 59128983 + 47254803 47255113 AluYb8 318 - 3 308 104978 6 3 0 246 13 11 42 chain 24103 chr19 59128983 + 47262463 47262827 THE1C 375 - 0 375 109734 25 1 0 37 4 3 83 7 14 16 21 23 35 0 4 135 chain 26397 chr19 59128983 + 47284575 47284877 AluSp 311 + 2 304 98420 302 chain 23198 chr19 59128983 + 47300608 47300937 MER4A 717 - 381 717 114684 63 2 21 124 9 0 84 0 1 18 9 5 20 chain 22889 chr19 59128983 + 47329707 47330000 AluY 311 + 0 289 116146 123 6 3 25 16 15 123 chain 23359 chr19 59128983 + 47336991 47337273 AluY 311 + 11 296 113877 112 1 0 7 1 2 11 0 3 150 chain 26383 chr19 59128983 + 47385754 47386109 L1PA8 5853 - 0 347 98479 70 1 0 18 6 5 19 2 1 52 1 0 9 3 2 69 2 0 44 1 0 58 chain 12094 chr19 59128983 + 47420406 47420582 L1MB2 1706 - 131 320 151816 54 11 10 61 0 5 20 0 9 30 chain 7805 chr19 59128983 + 47421327 47421473 L1MC4 1079 - 832 992 172278 59 31 47 7 2 0 47 chain 4892 chr19 59128983 + 47458781 47458842 Tigger4b 360 - 124 185 196358 61 chain 3178 chr19 59128983 + 47459180 47459291 Tigger4b 360 + 8 159 221386 17 0 1 8 58 97 28 chain 137478 chr19 59128983 + 47512358 47513871 SVA_D 2077 + 6 2065 26564 199 0 11 662 0 535 652 chain 23225 chr19 59128983 + 47518421 47518728 AluSp 311 - 0 301 114563 55 1 0 18 14 8 19 0 1 200 chain 24171 chr19 59128983 + 47538159 47538445 AluSp 311 + 2 288 109371 286 chain 27217 chr19 59128983 + 47553125 47553553 LTR7B 505 - 2 505 95532 49 14 13 54 0 1 21 1 0 46 0 1 7 5 93 23 35 11 21 0 1 47 0 10 105 chain 285882 chr19 59128983 + 47554777 47558236 HERVH-int 3825 - 0 3825 14295 225 3 9 127 0 1 125 8 218 31 0 3 5 9 11 55 1 0 382 0 1 8 5 67 259 0 1 157 0 3 116 0 10 153 1 0 142 9 35 598 2 0 237 0 3 64 1 0 24 2 3 23 1 0 30 2 1 26 3 41 13 1 14 24 1 0 10 1 0 35 6 1 31 0 2 331 0 2 140 4 0 28 chain 29165 chr19 59128983 + 47558238 47558666 LTR7B 505 - 2 505 88225 49 14 13 54 0 1 15 7 6 46 0 1 38 0 2 26 6 68 21 0 1 47 0 10 105 chain 2824 chr19 59128983 + 47636859 47636952 L2a 937 - 542 636 228311 20 9 5 10 29 34 25 chain 6836 chr19 59128983 + 47639305 47639390 L1MA3 4352 - 491 576 178683 85 chain 10783 chr19 59128983 + 47666545 47666697 MER2 342 + 58 215 157058 107 5 10 40 chain 24997 chr19 59128983 + 47684293 47684577 AluSp 311 + 2 286 104806 284 chain 22678 chr19 59128983 + 47714917 47715193 AluSg 306 + 26 296 117172 92 7 0 46 0 1 131 chain 27868 chr19 59128983 + 47722300 47722596 AluYb8 318 - 12 308 93463 296 chain 25450 chr19 59128983 + 47728172 47728467 AluSp 311 - 16 311 102456 295 chain 2883 chr19 59128983 + 47783885 47783915 FLAM_C 140 + 88 118 227319 30 chain 5294 chr19 59128983 + 47798654 47798739 LTR16E1 515 + 420 506 192082 63 11 12 11 chain 22946 chr19 59128983 + 47799966 47800409 LTR7 482 + 0 477 115878 79 58 7 15 16 66 57 6 38 23 11 10 17 0 1 52 1 2 52 12 14 44 chain 24356 chr19 59128983 + 47806801 47807098 AluY 311 + 10 300 108340 113 11 4 173 chain 17353 chr19 59128983 + 47811494 47811704 MER1A 529 + 194 404 134650 210 chain 23464 chr19 59128983 + 47832213 47832507 AluSp 311 - 6 302 113297 11 2 0 140 12 16 129 chain 22012 chr19 59128983 + 47845337 47845618 AluSx4 309 + 8 286 120174 56 2 0 132 2 1 89 chain 11949 chr19 59128983 + 47848451 47848605 MER41-int 2638 - 2 156 152412 154 chain 11314 chr19 59128983 + 47849470 47849630 MER66B 489 + 110 268 155017 40 2 0 52 9 9 57 chain 25628 chr19 59128983 + 47871555 47871851 AluSp 311 - 4 300 101588 296 chain 21295 chr19 59128983 + 47888225 47888504 AluSp 311 - 24 301 122877 180 1 0 66 12 11 20 chain 24268 chr19 59128983 + 47889636 47889909 AluY 311 + 38 311 108859 273 chain 35497 chr19 59128983 + 47896085 47896526 LTR7 482 + 0 482 75559 224 0 1 25 0 30 34 0 10 158 chain 270030 chr19 59128983 + 47896538 47900330 HERVH-int 3825 + 10 3825 15180 69 1 0 420 0 4 18 0 56 26 0 92 83 2 1 510 6 13 10 19 2 92 45 36 23 344 6 129 4 3 165 1 2 151 1 0 7 0 1 78 0 4 186 0 1 99 0 1 150 0 3 619 14 19 31 8 218 253 3 9 225 chain 35154 chr19 59128983 + 47901572 47902013 LTR7 482 + 0 482 75983 224 0 1 24 1 0 17 0 31 17 0 10 158 chain 18110 chr19 59128983 + 47929441 47929744 AluSq2 311 + 16 296 132569 15 21 6 34 11 1 37 1 2 19 13 14 152 chain 24871 chr19 59128983 + 47938807 47939096 AluSp 311 - 13 303 105510 32 0 1 257 chain 3317 chr19 59128983 + 48034207 48034247 MER45A 178 - 71 111 218649 40 chain 44841 chr19 59128983 + 48039067 48039578 MER9a3 513 - 0 513 63240 66 0 2 445 chain 48199 chr19 59128983 + 48067811 48068560 L1PB1 5432 + 4711 5427 60317 360 3 0 27 0 7 9 1 0 24 1 0 6 1 0 14 18 12 12 3 0 38 2 1 12 5 3 23 1 2 20 1 0 15 1 0 4 3 0 11 8 0 16 2 0 5 1 0 14 2 0 24 1 0 21 1 0 10 4 3 14 1 0 4 1 0 5 chain 17001 chr19 59128983 + 48094954 48095186 AluSp 311 + 14 276 135592 34 8 36 111 9 11 70 chain 9486 chr19 59128983 + 48109900 48110017 L1PA16 3655 - 232 349 163134 117 chain 23418 chr19 59128983 + 48127103 48127406 AluSp 311 - 13 310 113549 21 7 1 275 chain 5796 chr19 59128983 + 48203385 48203452 MIR 256 + 44 111 187179 67 chain 4026 chr19 59128983 + 48209614 48209661 MER83 447 - 148 195 206980 47 chain 2934 chr19 59128983 + 48230974 48231006 HY4 93 - 61 93 226425 32 chain 22641 chr19 59128983 + 48236648 48236929 AluY 311 + 0 288 117364 131 6 13 144 chain 33979 chr19 59128983 + 48322005 48322390 L1PA6 6164 - 2 387 77644 385 chain 3473 chr19 59128983 + 48351598 48351667 MIR 256 - 67 147 215771 18 6 20 5 3 0 37 chain 22089 chr19 59128983 + 48370813 48371088 AluSp 311 - 24 300 119842 81 0 1 77 1 0 82 0 1 34 chain 32834 chr19 59128983 + 48382817 48383195 L1PA5 6144 + 5765 6144 79483 231 0 1 147 chain 12739 chr19 59128983 + 48383535 48383707 THE1D 372 - 209 372 149294 108 9 0 55 chain 27036 chr19 59128983 + 48391159 48391450 AluY 311 + 10 302 96157 122 0 1 169 chain 17144 chr19 59128983 + 48400941 48401155 AluSg7 307 - 79 292 135189 96 0 1 67 2 0 49 chain 5913 chr19 59128983 + 48404534 48404868 MLT1C 463 + 64 397 186065 51 239 238 44 chain 21793 chr19 59128983 + 48405544 48405840 AluSg7 307 + 14 304 121045 113 1 2 59 1 0 86 11 5 25 chain 14343 chr19 59128983 + 48408542 48408822 L1PB1 5432 - 12 274 143407 16 1 0 9 0 3 22 0 1 23 2 0 13 12 6 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14689 chr19 59128983 + 48413909 48414189 L1PB1 5432 - 12 274 142295 16 1 0 9 0 3 22 0 1 23 2 0 13 0 1 4 5 1 19 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14118 chr19 59128983 + 48419292 48419572 L1PB1 5432 - 12 274 144153 16 1 0 9 0 3 22 0 1 23 2 0 13 12 6 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 13416 chr19 59128983 + 48424642 48424922 L1PB1 5432 - 12 274 146648 16 1 0 11 0 3 17 0 1 26 27 19 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14689 chr19 59128983 + 48429678 48429958 L1PB1 5432 - 12 274 142294 16 1 0 9 0 3 22 0 1 23 2 0 13 0 1 4 5 1 19 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14118 chr19 59128983 + 48435044 48435324 L1PB1 5432 - 12 274 144152 16 1 0 9 0 3 22 0 1 23 2 0 13 12 6 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14118 chr19 59128983 + 48440393 48440673 L1PB1 5432 - 12 274 144151 16 1 0 9 0 3 22 0 1 23 2 0 13 12 6 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14118 chr19 59128983 + 48445785 48446065 L1PB1 5432 - 12 274 144150 16 1 0 9 0 3 22 0 1 23 2 0 13 12 6 5 0 3 11 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14689 chr19 59128983 + 48451146 48451426 L1PB1 5432 - 12 274 142293 16 1 0 9 0 3 22 0 1 23 2 0 13 0 1 4 5 1 19 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 14567 chr19 59128983 + 48456535 48456815 L1PB1 5432 - 12 274 142685 16 1 0 9 0 3 22 0 1 23 2 0 13 0 1 4 5 1 19 15 7 5 3 0 16 1 0 43 1 0 16 2 1 49 4 2 11 chain 27224 chr19 59128983 + 48501765 48502063 AluY 311 + 4 302 95512 298 chain 5598 chr19 59128983 + 48511318 48511415 Tigger3c 601 - 73 171 189105 62 17 18 18 chain 18843 chr19 59128983 + 48517730 48517940 L1PA4 6152 + 5940 6151 130538 103 0 1 107 chain 8331 chr19 59128983 + 48530439 48531190 THE1B 368 + 2 368 169215 64 631 246 56 chain 25228 chr19 59128983 + 48540516 48540813 AluSp 311 - 3 300 103597 297 chain 24273 chr19 59128983 + 48545817 48546118 AluSg4 309 - 10 298 108828 7 13 0 281 chain 4093 chr19 59128983 + 48549436 48549484 L1MC4 1079 + 768 816 206033 48 chain 4832 chr19 59128983 + 48554683 48554762 MADE1 96 - 0 96 196998 38 11 28 30 chain 15324 chr19 59128983 + 48554783 48555019 THE1D 372 - 147 371 140414 29 35 18 6 0 4 6 0 1 160 chain 356 chr19 59128983 + 48565893 48565979 MLT1B 390 + 32 118 162542 86 chain 13350 chr19 59128983 + 48566598 48566777 MER4A1 472 - 292 472 146883 16 1 2 14 2 1 40 0 1 106 chain 20463 chr19 59128983 + 48567711 48567971 MER41C 542 - 282 542 125723 260 chain 323 chr19 59128983 + 48568136 48568214 MLT1B 390 + 278 356 162542 78 chain 11897 chr19 59128983 + 48568911 48569069 MER4B 649 - 260 433 152616 31 1 16 126 chain 25149 chr19 59128983 + 48580451 48580790 L1PB 1623 + 1144 1476 104002 160 10 5 137 1 0 7 2 1 22 chain 2930 chr19 59128983 + 48686299 48686352 MER3 215 + 73 127 226500 33 8 9 12 chain 24733 chr19 59128983 + 48688394 48688691 AluSp 311 - 10 311 106260 158 1 6 5 1 0 132 chain 4279 chr19 59128983 + 48708217 48708268 MER53 195 + 138 189 203481 51 chain 28144 chr19 59128983 + 48709688 48710074 MER51E 476 + 14 470 92483 32 0 11 94 0 34 109 9 8 27 11 13 64 0 24 40 chain 11926 chr19 59128983 + 48718346 48718485 MER50 708 + 556 695 152495 139 chain 32632 chr19 59128983 + 48768548 48768936 MER41A 554 + 0 388 79793 388 chain 23229 chr19 59128983 + 48772100 48772376 AluSp 311 + 11 286 114547 121 1 0 154 chain 39396 chr19 59128983 + 48772973 48773444 LTR7C 471 + 0 471 70171 418 1 0 31 5 6 16 chain 24219 chr19 59128983 + 48778970 48779250 AluYc 301 + 1 283 109100 119 0 2 161 chain 24703 chr19 59128983 + 48779329 48779613 AluSp 311 - 5 289 106416 284 chain 23494 chr19 59128983 + 48875620 48875917 AluYf4 310 + 0 292 113157 132 17 12 148 chain 6232 chr19 59128983 + 48881368 48881453 MER33 330 - 95 188 183303 18 0 5 29 0 3 38 chain 25476 chr19 59128983 + 48925588 48925883 AluSc5 308 + 1 296 102330 295 chain 20797 chr19 59128983 + 48926223 48926490 AluSx1 309 + 38 299 124613 254 6 0 7 chain 20508 chr19 59128983 + 48942902 48943178 AluSp 311 + 0 260 125605 37 16 0 223 chain 3724 chr19 59128983 + 48962951 48962996 L1MB7 1623 - 683 728 211564 45 chain 29316 chr19 59128983 + 48989305 48989615 AluYa5 310 - 0 310 87459 310 chain 33847 chr19 59128983 + 49041175 49041614 L1PA8 5853 - 9 438 77854 84 1 0 19 2 1 51 4 0 7 1 0 74 3 1 45 1 0 147 chain 25910 chr19 59128983 + 49082862 49083152 AluSq10 312 - 11 301 100377 290 chain 13445 chr19 59128983 + 49088939 49089088 L1PA4 6152 + 5994 6143 146539 149 chain 21721 chr19 59128983 + 49096903 49097155 AluSp 311 - 24 276 121311 252 chain 34463 chr19 59128983 + 49124834 49125642 LTR15 485 - 10 485 76971 12 6 7 16 7 0 39 6 5 115 0 4 63 1 0 87 4 0 27 326 0 41 0 1 58 chain 28029 chr19 59128983 + 49125230 49125543 AluYg6 310 + 0 308 92899 131 3 0 42 2 0 135 chain 21669 chr19 59128983 + 49126229 49126515 AluSc8 310 + 10 303 121506 114 2 5 79 8 11 4 0 1 79 chain 3047 chr19 59128983 + 49137507 49137539 U2 167 - 135 167 224056 32 chain 27368 chr19 59128983 + 49143622 49143930 AluSp 311 - 3 311 95053 308 chain 3862 chr19 59128983 + 49159490 49159537 MIR 256 - 38 85 209414 47 chain 9579 chr19 59128983 + 49191974 49192080 L1PA5 6144 - 2 108 162701 106 chain 15758 chr19 59128983 + 49221634 49221810 AluSp 311 - 2 178 139085 176 chain 75584 chr19 59128983 + 49256776 49258041 LTR13A 966 - 1 966 45724 29 4 0 6 1 0 5 0 1 158 2 0 165 315 0 107 4 23 261 2 1 5 0 1 73 1 2 121 0 1 6 chain 22502 chr19 59128983 + 49267992 49268263 AluSp 311 - 30 301 118019 271 chain 21105 chr19 59128983 + 49282577 49282835 AluY 311 + 38 298 123537 94 0 1 126 1 2 37 chain 4139 chr19 59128983 + 49283710 49283763 MER21C 908 + 185 249 205381 43 0 11 10 chain 45036 chr19 59128983 + 49290688 49291214 LTR10C 591 - 65 591 63011 14 0 2 479 2 0 31 chain 8801 chr19 59128983 + 49296408 49296515 U6 107 - 0 107 166637 107 chain 35729 chr19 59128983 + 49360797 49361175 SVA_D 2077 + 1688 2066 75225 378 chain 81192 chr19 59128983 + 49379478 49380474 LTR13 1007 - 0 1007 43092 315 0 12 42 11 10 242 4 5 77 1 0 304 chain 8826 chr19 59128983 + 49385544 49385645 MER41B 635 + 22 123 166522 101 chain 44717 chr19 59128983 + 49385667 49386195 LTR10C 591 - 0 528 63362 528 chain 77302 chr19 59128983 + 49392892 49393855 LTR5_Hs 974 + 0 974 44831 288 0 1 178 0 1 188 1 0 163 8 15 31 8 6 64 0 5 34 chain 6040 chr19 59128983 + 49396066 49396150 LTR5B 1012 - 929 1012 184889 33 2 1 49 chain 4030 chr19 59128983 + 49414999 49415057 MLT1C 463 - 345 404 206931 11 1 2 46 chain 4661 chr19 59128983 + 49429815 49429874 LTR47B 464 - 33 92 198950 59 chain 4473 chr19 59128983 + 49441839 49441902 MLT1B 390 - 219 274 201086 20 8 0 35 chain 8261 chr19 59128983 + 49449254 49449360 FLAM_C 140 + 28 139 169624 89 0 5 17 chain 41335 chr19 59128983 + 49451590 49452078 MER9a3 513 + 14 513 67488 244 1 0 101 1 13 141 chain 26783 chr19 59128983 + 49453161 49453543 LTR7B 505 - 10 505 97035 41 14 13 89 0 41 52 0 2 5 20 81 56 0 10 105 chain 23040 chr19 59128983 + 49478904 49479192 AluY 311 + 2 306 115443 130 0 1 17 11 26 130 chain 79594 chr19 59128983 + 49577990 49578983 LTR13 1007 + 0 1007 43783 73 2 0 308 8 9 169 0 8 119 9 15 114 6 7 185 chain 27260 chr19 59128983 + 49581971 49582258 AluYa5 310 - 24 310 95404 160 1 0 126 chain 8539 chr19 59128983 + 49600670 49600795 MER85 139 + 14 139 168067 53 1 2 27 10 9 34 chain 23119 chr19 59128983 + 49608705 49609012 AluSg7 307 + 0 306 115046 17 0 2 112 6 7 110 4 0 58 chain 8214 chr19 59128983 + 49644267 49644453 MER63A 208 + 2 200 169871 15 43 59 80 21 17 27 chain 26157 chr19 59128983 + 49678324 49678620 AluSp 311 - 4 300 99375 296 chain 4619 chr19 59128983 + 49695056 49695109 MSTB 430 - 377 430 199409 53 chain 24714 chr19 59128983 + 49698631 49698926 AluSp 311 - 15 311 106362 50 0 1 245 chain 43315 chr19 59128983 + 49704306 49704862 LTR10C 591 - 20 578 65023 62 7 9 361 4 1 5 0 3 117 chain 27116 chr19 59128983 + 49709683 49709995 AluSp 311 - 1 311 95880 7 2 0 303 chain 65246 chr19 59128983 + 49711070 49712028 LTR13 1007 - 52 1006 50443 218 0 1 10 27 41 22 37 14 20 2 1 162 0 2 74 8 9 116 0 1 20 5 6 4 1 0 103 0 3 45 0 3 6 3 0 5 2 0 68 chain 20373 chr19 59128983 + 49730083 49730310 AluY 311 + 63 291 125983 69 0 1 158 chain 14655 chr19 59128983 + 49739966 49740303 L1PB1 5432 - 21 325 142410 7 1 0 13 1 0 21 1 0 14 12 10 15 1 0 4 2 0 19 17 12 16 1 0 44 8 7 10 1 0 52 17 11 10 1 0 7 2 1 23 9 0 8 chain 39270 chr19 59128983 + 49742062 49742544 L1PA7 6471 - 50 535 70370 105 1 3 33 0 1 343 chain 19052 chr19 59128983 + 49743223 49743483 Tigger1 2417 - 1282 1546 129966 96 0 3 45 10 11 109 chain 76930 chr19 59128983 + 49769492 49770486 LTR13 1007 + 2 1007 45005 70 3 0 309 8 9 238 2 1 64 3 13 109 0 1 92 0 5 43 22 20 31 chain 122370 chr19 59128983 + 49791022 49792586 THE1A-int 1579 + 0 1574 30259 179 0 6 83 2 1 171 0 2 60 0 1 458 0 9 9 38 19 115 7 11 48 5 6 279 5 12 105 chain 23284 chr19 59128983 + 49795346 49795644 AluSg 306 + 2 296 114284 51 4 5 227 5 0 11 chain 25045 chr19 59128983 + 49811431 49811731 AluY 311 + 4 304 104568 300 chain 11799 chr19 59128983 + 49878599 49878906 AluJo 314 - 3 314 153047 9 2 0 19 1 0 62 134 1 38 1 141 41 chain 6035 chr19 59128983 + 49882775 49882850 Tigger2b_Pri 1066 - 160 235 184936 75 chain 19964 chr19 59128983 + 49891709 49891966 AluSc8 310 + 38 301 127260 50 7 11 33 0 3 132 1 0 34 chain 6443 chr19 59128983 + 49905536 49905641 FLAM_C 140 + 10 119 181688 37 19 23 49 chain 2984 chr19 59128983 + 49970578 49970613 MSTB 430 - 377 412 225354 35 chain 9875 chr19 59128983 + 49970984 49971101 L1PA8A 6298 - 7 124 161201 117 chain 24423 chr19 59128983 + 49971134 49971435 AluY 311 + 5 301 107947 121 5 0 175 chain 3530 chr19 59128983 + 50009851 50009892 MADE1 96 + 55 96 214873 41 chain 23515 chr19 59128983 + 50011851 50012143 AluSg4 309 + 4 297 113040 270 5 6 17 chain 24693 chr19 59128983 + 50012519 50012825 AluY 311 + 0 307 106472 28 1 0 97 1 3 179 chain 25223 chr19 59128983 + 50030560 50030854 AluSp 311 - 18 311 103619 119 2 1 173 chain 25360 chr19 59128983 + 50113236 50113521 AluSq10 312 - 17 302 102889 285 chain 24789 chr19 59128983 + 50122792 50123078 AluSp 311 - 6 291 105948 183 1 0 102 chain 23114 chr19 59128983 + 50126600 50126907 AluY 311 + 0 301 115066 76 11 6 45 1 0 174 chain 13461 chr19 59128983 + 50131310 50131489 MER107 203 + 0 198 146484 15 0 1 33 3 10 97 1 12 30 chain 25117 chr19 59128983 + 50133632 50133933 AluSp 311 + 0 303 104188 141 0 1 5 0 1 155 chain 28791 chr19 59128983 + 50224336 50224644 AluYa5 310 - 2 310 89940 308 chain 37261 chr19 59128983 + 50226361 50226949 LTR14B 630 + 18 627 73156 48 0 1 227 118 140 80 3 1 112 chain 23709 chr19 59128983 + 50227162 50227471 AluY 311 + 0 293 111983 131 16 0 162 chain 16624 chr19 59128983 + 50229203 50229558 THE1D 372 - 15 372 136603 111 63 68 7 0 6 50 17 17 20 36 27 51 chain 5543 chr19 59128983 + 50252779 50252842 MLT1J 494 + 96 159 189627 63 chain 5862 chr19 59128983 + 50267817 50267887 U6 107 - 37 107 186565 70 chain 37245 chr19 59128983 + 50323420 50324020 LTR76 689 - 37 689 73174 18 1 0 20 21 23 41 2 1 87 4 1 66 0 8 5 2 1 38 0 6 11 5 15 107 1 0 38 1 0 6 1 21 77 9 13 17 1 11 21 chain 22871 chr19 59128983 + 50383140 50383414 AluSp 311 - 42 311 116223 141 3 0 3 2 0 125 chain 23932 chr19 59128983 + 50429194 50429487 AluSg 306 + 9 302 110738 293 chain 2822 chr19 59128983 + 50430455 50430557 MIR 256 - 134 239 228425 16 17 22 18 31 29 20 chain 80396 chr19 59128983 + 50444149 50445148 LTR13 1007 + 0 1007 43430 73 2 0 308 4 5 173 0 8 57 6 5 25 0 2 258 0 1 5 1 2 53 3 1 31 chain 5373 chr19 59128983 + 50448845 50448917 MER51E 476 - 0 67 191282 47 4 0 16 1 0 4 chain 5919 chr19 59128983 + 50468892 50468973 L1PBb 2709 - 633 715 185992 13 1 2 67 chain 24221 chr19 59128983 + 50515225 50515517 AluSp 311 - 9 300 109083 222 2 1 68 chain 4273 chr19 59128983 + 50518886 50518991 Tigger4a 237 + 130 237 203583 32 1 19 13 32 16 27 chain 8198 chr19 59128983 + 50574628 50574730 BC200 147 + 0 102 169961 102 chain 145022 chr19 59128983 + 50588970 50590603 SVA_D 2077 + 0 2077 25325 13 1 0 6 5 0 16 3 1 85 0 1 794 1 138 122 0 315 568 1 0 18 chain 24613 chr19 59128983 + 50596937 50597224 AluSp 311 - 13 300 106923 287 chain 14118 chr19 59128983 + 50597975 50598255 L1PB1 5432 + 5158 5420 144149 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 24613 chr19 59128983 + 50611472 50611759 AluSp 311 - 13 300 106922 287 chain 14118 chr19 59128983 + 50612510 50612790 L1PB1 5432 + 5158 5420 144148 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 24613 chr19 59128983 + 50616826 50617113 AluSp 311 - 13 300 106921 287 chain 14118 chr19 59128983 + 50617864 50618144 L1PB1 5432 + 5158 5420 144147 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 24613 chr19 59128983 + 50622176 50622463 AluSp 311 - 13 300 106920 287 chain 13996 chr19 59128983 + 50623214 50623494 L1PB1 5432 + 5158 5420 144590 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 24613 chr19 59128983 + 50627528 50627815 AluSp 311 - 13 300 106919 287 chain 14343 chr19 59128983 + 50628566 50628846 L1PB1 5432 + 5158 5420 143406 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 24613 chr19 59128983 + 50632863 50633150 AluSp 311 - 13 300 106918 287 chain 14343 chr19 59128983 + 50633901 50634181 L1PB1 5432 + 5158 5420 143405 11 4 2 49 2 1 16 1 0 43 1 0 16 3 0 5 15 7 11 0 3 5 12 6 13 2 0 23 0 1 20 0 3 9 1 0 18 chain 13652 chr19 59128983 + 50639243 50639522 L1PB1 5432 + 5158 5419 145770 11 4 2 49 2 1 16 1 0 43 1 0 15 52 38 13 2 0 23 0 1 22 0 3 9 1 0 15 chain 128706 chr19 59128983 + 50643656 50645130 SVA_D 2077 + 6 2075 28386 12 9 1 6 1 0 89 0 5 465 0 116 207 8 0 6 0 488 654 0 3 17 chain 4749 chr19 59128983 + 50645698 50645768 MER96B 391 - 228 295 197934 34 2 0 23 1 0 10 chain 3711 chr19 59128983 + 50755167 50755210 MER58A 224 - 181 224 211788 43 chain 20363 chr19 59128983 + 50781978 50782245 AluSp 311 + 29 282 126018 96 15 1 156 chain 26188 chr19 59128983 + 50787046 50787358 AluSp 311 + 0 311 99248 24 1 0 287 chain 29393 chr19 59128983 + 50848567 50849758 L1M1 2793 - 390 945 87102 41 6 10 38 379 65 20 0 4 53 324 0 38 3 0 29 17 8 25 11 12 118 7 12 82 chain 35329 chr19 59128983 + 50850233 50850735 LTR2B 499 - 0 499 75761 55 2 1 5 1 0 160 16 21 8 5 0 46 0 2 186 3 0 15 chain 156814 chr19 59128983 + 50850767 50853447 HERVE_a-int 7009 - 19 2634 23756 23 33 25 15 8 6 30 2 0 24 1 0 13 3 1 6 1 0 30 1 0 27 3 1 54 2 0 26 4 0 9 2 1 53 1 0 8 1 0 26 1 0 7 1 0 46 1 0 14 21 20 17 6 5 7 2 0 5 1 0 16 3 2 8 1 0 32 1 0 26 0 1 17 1 0 44 14 15 59 20 18 73 56 52 45 1 0 5 1 0 9 4 3 99 6 4 221 185 181 19 4 0 6 1 0 75 10 9 27 3 2 31 0 1 78 9 0 440 1 0 4 4 5 82 9 10 5 1 0 70 8 10 174 4 5 133 chain 29359 chr19 59128983 + 50858136 50858768 MLT2A1 477 - 81 477 87250 46 1 0 146 0 1 23 0 1 9 6 3 64 241 0 32 2 5 47 0 4 15 chain 12200 chr19 59128983 + 50858473 50858672 L1PA8 5853 - 0 194 151425 93 1 0 15 2 1 32 0 1 8 29 25 19 chain 18858 chr19 59128983 + 50869663 50870767 L1M1 2793 - 1682 2132 130492 39 0 1 68 1 0 29 1 0 25 62 60 14 625 0 36 1 0 8 2 0 28 2 1 27 102 80 34 chain 24843 chr19 59128983 + 50878363 50878673 AluSp 311 - 19 311 105661 59 16 0 57 2 0 176 chain 100257 chr19 59128983 + 50893832 50894976 SVA_B 1603 - 0 1603 36703 352 0 3 88 0 3 74 0 398 164 0 39 429 16 32 21 chain 23069 chr19 59128983 + 50911316 50911616 AluSc8 310 + 9 309 115307 20 4 0 98 1 5 177 chain 5533 chr19 59128983 + 50953861 50953934 MIR 256 - 112 185 189725 4 0 1 4 1 0 64 chain 19884 chr19 59128983 + 51043912 51044157 MER1A 529 + 174 416 127535 217 3 0 25 chain 18412 chr19 59128983 + 51048160 51048382 AluY 311 + 73 295 131739 59 0 1 138 1 0 24 chain 52255 chr19 59128983 + 51085094 51085747 SVA_B 1603 - 0 586 57460 6 2 0 515 65 0 65 chain 9985 chr19 59128983 + 51095391 51095531 LTR9 672 - 386 525 160652 27 1 0 57 1 2 5 1 0 48 chain 15416 chr19 59128983 + 51101595 51101785 Tigger1 2417 + 1821 2011 140151 68 1 0 115 0 1 6 chain 14091 chr19 59128983 + 51143892 51144102 MER30 238 - 0 238 144253 30 9 18 50 0 2 10 4 21 107 chain 26689 chr19 59128983 + 51144425 51144725 AluYc 301 - 1 301 97354 300 chain 24327 chr19 59128983 + 51240482 51240770 AluY 311 + 4 293 108505 128 1 2 159 chain 3679 chr19 59128983 + 51245281 51245322 LTR46 455 + 414 455 212253 41 chain 25508 chr19 59128983 + 51246197 51246527 AluY 311 + 3 311 102183 129 0 1 128 28 5 45 chain 2879 chr19 59128983 + 51345791 51345825 LTR40a 516 + 387 422 227393 29 0 1 5 chain 15594 chr19 59128983 + 51345851 51346035 L1PBa 3878 - 2463 2674 139603 141 0 27 43 chain 17065 chr19 59128983 + 51370300 51370574 LTR47A 437 + 160 411 135415 24 24 15 24 14 0 32 1 0 145 0 1 10 chain 4424 chr19 59128983 + 51393043 51393127 LTR40a 516 - 49 134 201660 37 23 24 24 chain 5489 chr19 59128983 + 51403592 51403663 MER66C 541 - 462 539 190143 16 1 7 54 chain 23691 chr19 59128983 + 51407388 51407696 AluYf4 310 + 0 299 112079 52 14 12 139 0 1 60 8 0 35 chain 32400 chr19 59128983 + 51423980 51424759 MER4A1 472 - 10 471 80196 211 0 22 92 340 0 30 4 5 69 1 0 32 chain 2980 chr19 59128983 + 51429086 51429119 MER58A 224 - 138 171 225457 33 chain 24489 chr19 59128983 + 51454522 51454827 AluSp 311 - 11 311 107604 18 5 0 140 4 5 5 2 0 27 0 1 104 chain 29231 chr19 59128983 + 51457476 51457786 AluYa5 310 + 0 309 87901 132 1 0 177 chain 23281 chr19 59128983 + 51469782 51470062 AluSx 319 + 8 288 114292 280 chain 28119 chr19 59128983 + 51492614 51493032 L1PB3 3668 - 102 498 92577 37 3 1 24 2 1 21 20 4 87 9 8 92 1 0 108 1 0 13 chain 24429 chr19 59128983 + 51496497 51496793 AluSp 311 + 14 306 107920 118 4 0 174 chain 12178 chr19 59128983 + 51545430 51545568 L1PA4 6152 + 6014 6152 151502 138 chain 20551 chr19 59128983 + 51553304 51553530 AluYa5 310 + 87 310 125471 36 3 0 187 chain 3430 chr19 59128983 + 51591791 51591831 L1MB3 1562 - 147 187 216559 40 chain 21046 chr19 59128983 + 51599330 51599736 L1PB1 5432 + 5054 5424 123747 49 15 11 20 1 0 13 16 11 9 2 0 53 2 1 16 1 0 43 1 0 16 1 0 4 2 0 13 31 19 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 23386 chr19 59128983 + 51606588 51606862 AluY 311 + 28 303 113726 104 0 1 170 chain 25402 chr19 59128983 + 51612524 51612814 AluSc 308 + 5 295 102671 290 chain 16817 chr19 59128983 + 51642988 51643277 MER51D 577 + 49 351 136076 29 1 0 15 11 4 16 21 20 149 0 23 19 14 13 14 chain 86228 chr19 59128983 + 51652769 51653960 L1PREC2 3366 - 499 1706 41069 14 7 3 38 7 6 22 0 2 30 2 0 173 8 12 216 7 8 45 0 1 328 0 1 64 0 14 193 3 0 8 7 10 19 chain 70562 chr19 59128983 + 51672072 51673065 LTR13 1007 - 0 1007 48132 27 34 32 35 0 5 203 0 9 4 2 0 63 2 1 161 1 3 74 8 9 88 26 30 180 0 3 5 5 0 75 chain 16047 chr19 59128983 + 51700219 51700457 L1PA8 5853 - 0 243 138221 72 0 8 12 2 1 19 2 1 38 0 1 8 1 0 14 2 1 68 chain 47115 chr19 59128983 + 51727264 51727824 LTR19B 566 - 0 566 61114 53 0 1 4 0 4 288 0 1 215 chain 47037 chr19 59128983 + 51734041 51734670 LTR14B 630 + 9 630 61174 342 0 21 21 0 9 22 48 10 196 chain 5843 chr19 59128983 + 51739055 51739131 MER74A 558 - 10 86 186749 76 chain 53020 chr19 59128983 + 51749759 51750426 PABL_B 668 + 0 668 57005 178 0 1 66 1 0 14 6 5 187 5 7 210 chain 5061 chr19 59128983 + 51751085 51751144 PABL_A 660 - 422 481 194526 59 chain 42208 chr19 59128983 + 51752968 51753829 MER41A 554 - 0 554 66391 132 10 14 215 322 11 182 chain 19832 chr19 59128983 + 51769504 51769832 Tigger4b 360 + 25 351 127705 32 22 21 38 14 23 164 13 3 45 chain 28230 chr19 59128983 + 51776407 51776706 AluYa5 310 + 0 298 92194 97 1 0 201 chain 9445 chr19 59128983 + 51793332 51793793 MLT1B 390 - 1 145 163338 66 329 12 66 chain 26184 chr19 59128983 + 51795065 51795370 MER41A 554 - 249 554 99266 305 chain 6125 chr19 59128983 + 51807241 51807316 L1MA5A 2387 + 2232 2306 184230 63 1 0 11 chain 3389 chr19 59128983 + 51807550 51807588 MER21-int 1364 - 160 198 217324 38 chain 2953 chr19 59128983 + 51811488 51811521 MER21B 843 - 810 843 226027 33 chain 86736 chr19 59128983 + 51858389 51859355 L1PA4 6152 + 5183 6151 40869 206 0 1 756 0 1 4 chain 9505 chr19 59128983 + 51859381 51859553 MER61F 604 + 428 599 163045 109 42 41 21 chain 3124 chr19 59128983 + 51863794 51863829 MIR 256 - 120 155 222462 35 chain 19559 chr19 59128983 + 51868169 51868460 AluSp 311 + 9 294 128493 50 4 0 73 2 0 40 32 0 14 0 32 76 chain 27962 chr19 59128983 + 51879382 51880272 MER4A1 472 + 0 472 93131 10 0 4 163 365 100 138 157 0 57 chain 48144 chr19 59128983 + 51900604 51901195 LTR14B 630 - 13 611 60367 62 0 5 474 0 1 18 0 1 37 chain 100135 chr19 59128983 + 51903724 51905374 HERVK14-int 1672 - 339 1671 36734 25 1 0 201 4 3 33 2 0 7 1 0 3 1 0 65 7 8 6 1 0 163 1 0 204 1 0 47 1 0 50 308 0 184 45 47 199 1 0 47 1 0 11 1 0 29 chain 53202 chr19 59128983 + 51905577 51906207 LTR14B 630 - 0 630 56892 630 chain 25345 chr19 59128983 + 51908303 51908600 L1PA6 6164 - 2 295 102982 6 4 0 287 chain 40853 chr19 59128983 + 51913191 51913728 MER41A 554 - 0 539 68091 28 2 0 42 10 15 62 1 0 392 chain 39704 chr19 59128983 + 51917120 51917619 LTR3B_ 500 - 0 500 69748 339 4 5 156 chain 11600 chr19 59128983 + 51931571 51931755 MER61D 487 + 306 487 153888 19 7 6 68 8 7 71 2 1 9 chain 29714 chr19 59128983 + 51947409 51947762 L1P1 4361 + 3991 4341 85783 159 1 0 155 1 0 23 2 1 12 chain 59782 chr19 59128983 + 51950371 51951189 LTR12 884 - 8 884 52939 88 1 0 208 5 9 193 2 0 40 0 1 11 9 50 95 2 18 23 18 2 23 2 18 73 1 0 24 chain 20896 chr19 59128983 + 51956673 51956935 AluSg 306 + 4 267 124290 83 6 7 173 chain 45358 chr19 59128983 + 51958962 51959467 L1PA4 6152 + 5624 6136 62647 382 0 7 123 chain 23710 chr19 59128983 + 51962817 51963090 AluSc5 308 - 26 299 111979 273 chain 33840 chr19 59128983 + 52054390 52054831 LTR3A 482 + 25 466 77871 137 0 1 101 1 0 113 1 0 12 1 2 12 1 0 39 6 7 17 chain 36216 chr19 59128983 + 52069905 52070357 LTR3A 482 - 17 482 74608 60 11 10 188 0 14 193 chain 25122 chr19 59128983 + 52086112 52086406 AluSp 311 - 16 310 104164 294 chain 2803 chr19 59128983 + 52092310 52092354 Tigger4a 237 + 2 48 228694 29 4 6 11 chain 20200 chr19 59128983 + 52143953 52144237 AluSq2 311 + 8 293 126526 34 0 1 80 0 2 9 24 22 137 chain 23940 chr19 59128983 + 52151523 52151796 AluSp 311 - 4 277 110688 273 chain 102117 chr19 59128983 + 52175944 52177036 L1HS 6032 - 0 1092 36232 1092 chain 45020 chr19 59128983 + 52177036 52177514 L1HS 6032 + 4456 4934 62919 478 chain 61418 chr19 59128983 + 52179489 52180333 LTR12 884 + 0 884 52144 58 0 41 176 1 0 102 2 0 68 29 30 66 5 6 25 6 8 57 1 0 72 1 0 175 chain 14464 chr19 59128983 + 52187865 52188088 MER30 238 - 0 238 143006 34 5 8 66 5 0 8 11 28 94 chain 14938 chr19 59128983 + 52202825 52203050 MLT1B 390 - 106 356 141512 52 14 31 108 3 11 48 chain 6084 chr19 59128983 + 52226086 52226183 MER33 330 + 198 292 184545 10 1 0 46 2 1 33 1 0 4 chain 79513 chr19 59128983 + 52234004 52235065 MER11C 1089 - 16 1089 43819 8 0 1 144 1 0 54 0 1 127 0 1 38 1 0 4 1 5 59 4 0 53 47 46 147 2 1 63 0 4 60 1 10 247 chain 23191 chr19 59128983 + 52236604 52236957 L1PA8 5853 + 5506 5853 114720 58 1 0 44 2 0 15 8 6 52 1 0 7 6 0 7 10 9 36 2 1 16 4 12 84 chain 15250 chr19 59128983 + 52255989 52256206 MER30 238 - 1 237 140630 38 3 0 84 6 10 59 6 24 21 chain 13546 chr19 59128983 + 52258793 52259101 THE1B 368 + 0 305 146185 107 92 88 4 1 0 11 0 4 13 11 10 5 1 0 63 chain 224678 chr19 59128983 + 52260431 52262882 L1PA3long 6157 + 3700 6155 17622 1524 0 1 4 1 0 283 0 4 639 chain 19428 chr19 59128983 + 52276284 52276622 THE1C 375 + 1 336 128877 13 2 0 73 1 2 20 21 25 25 1 0 27 7 8 34 13 9 24 2 0 75 chain 18024 chr19 59128983 + 52289609 52289838 L1PA7 6471 + 6227 6455 132793 54 1 0 137 0 9 7 9 0 21 chain 44187 chr19 59128983 + 52290371 52290923 MER41A 554 + 0 554 63960 134 4 3 290 0 1 78 0 1 37 0 1 9 chain 35382 chr19 59128983 + 52307952 52308417 LTR3A 482 - 4 482 75691 46 13 12 17 9 8 75 0 1 112 0 14 193 chain 12824 chr19 59128983 + 52310313 52310461 LTR3A 482 - 62 210 148957 148 chain 2092 chr19 59128983 + 52310507 52310529 LTR3A 482 - 254 276 237704 22 chain 12823 chr19 59128983 + 52310569 52310738 LTR3A 482 - 302 482 148963 19 0 7 9 0 1 27 1 2 5 0 1 9 0 1 99 chain 10776 chr19 59128983 + 52314861 52315025 LTR3A 482 - 0 162 157090 46 17 16 17 2 1 82 chain 11381 chr19 59128983 + 52315048 52315192 LTR3A 482 - 339 482 154778 127 2 1 15 chain 6624 chr19 59128983 + 52321288 52321364 L1PA4 6152 + 5815 5891 180274 76 chain 3216 chr19 59128983 + 52349603 52349638 MLT1A 405 + 91 126 220634 35 chain 10440 chr19 59128983 + 52393790 52393914 LTR3A 482 + 0 126 158529 109 0 1 5 0 1 10 chain 8740 chr19 59128983 + 52396016 52396162 MER49 923 + 180 326 166977 68 16 17 18 5 4 39 chain 5485 chr19 59128983 + 52405685 52405758 MER21B 843 - 301 374 190173 28 0 1 27 1 0 17 chain 35568 chr19 59128983 + 52405776 52406290 MER75 514 - 17 513 75456 7 2 0 58 8 12 78 23 0 235 4 7 99 chain 79182 chr19 59128983 + 52408944 52409914 LTR5_Hs 974 + 0 974 43960 467 0 1 188 0 1 119 7 7 25 0 1 93 0 1 71 chain 78333 chr19 59128983 + 52409960 52411007 MER11C 1089 + 0 1063 44360 247 7 16 50 0 4 69 1 0 177 16 15 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 119 1 2 22 chain 73393 chr19 59128983 + 52411444 52412410 LTR5_Hs 974 - 0 974 46838 72 0 1 30 20 18 19 8 15 67 8 0 7 0 8 247 11 11 11 0 1 181 0 1 285 chain 23411 chr19 59128983 + 52413872 52414154 L1PA6 6164 + 5869 6152 113590 139 0 1 143 chain 34423 chr19 59128983 + 52416537 52416966 LTR3 431 + 0 431 77026 263 12 13 68 0 1 86 chain 3689 chr19 59128983 + 52425425 52425465 tRNA-Lys-AAG 49 - 6 46 212118 40 chain 12400 chr19 59128983 + 52426289 52426461 MER30 238 + 39 225 150636 19 0 5 43 3 0 15 5 17 87 chain 67174 chr19 59128983 + 52427171 52427938 L1PA7 6471 + 5689 6457 49579 195 0 1 572 chain 71716 chr19 59128983 + 52456123 52456905 SVA_D 2077 + 1236 2077 47601 116 0 49 328 0 10 338 chain 29053 chr19 59128983 + 52474678 52475133 LTR3A 482 + 3 482 88748 153 7 16 11 10 24 54 12 10 98 0 2 24 16 15 32 0 1 10 1 2 27 chain 28575 chr19 59128983 + 52479127 52479668 LTR3A 482 + 0 442 90843 15 7 0 43 0 1 59 7 8 35 0 12 20 122 14 55 1 0 86 0 1 32 3 6 20 1 0 35 chain 2651 chr19 59128983 + 52479313 52479344 LTR3A 482 + 207 238 231001 31 chain 29340 chr19 59128983 + 52484273 52484672 LTR3A 482 + 0 421 87342 157 6 15 21 0 14 59 7 6 117 0 1 18 1 0 13 chain 5808 chr19 59128983 + 52485196 52485266 LTR56 451 + 12 82 187064 70 chain 24888 chr19 59128983 + 52490674 52490961 AluSc5 308 - 21 308 105421 287 chain 7903 chr19 59128983 + 52493831 52493997 FAM 185 + 10 176 171622 38 55 56 53 1 0 19 chain 32644 chr19 59128983 + 52515910 52516371 LTR3A 482 - 0 482 79773 75 1 0 4 4 6 9 0 5 141 34 47 119 0 2 74 chain 39842 chr19 59128983 + 52527734 52528244 LTR5_Hs 974 + 0 504 69549 409 15 5 45 0 4 41 chain 6792 chr19 59128983 + 52531214 52531292 LTR5_Hs 974 + 349 427 179015 78 chain 75965 chr19 59128983 + 52546384 52547353 LTR5_Hs 974 + 0 974 45503 169 1 0 116 0 1 181 0 1 183 6 5 163 8 15 19 20 18 103 chain 10537 chr19 59128983 + 52548166 52548331 MER30 238 - 1 198 158108 92 26 58 47 chain 24834 chr19 59128983 + 52548595 52548907 AluSp 311 - 1 311 105700 7 3 0 249 5 6 48 chain 297247 chr19 59128983 + 52555944 52559385 L1P2 5180 + 1729 5174 13568 478 0 2 71 6 1 695 1 2 236 0 1 111 0 1 915 1 2 75 0 1 40 0 4 724 2 1 47 1 0 38 chain 29846 chr19 59128983 + 52559708 52560256 MER11A 1151 + 154 1151 85298 23 8 0 53 1 0 64 4 0 14 58 501 14 16 49 11 18 0 37 0 1 51 17 16 76 0 4 83 chain 62444 chr19 59128983 + 52560256 52560972 L1PA5 6144 + 5425 6141 51697 716 chain 3007 chr19 59128983 + 52563126 52563159 MER51A 677 + 383 416 224910 33 chain 29179 chr19 59128983 + 52567315 52567635 AluYb8 318 + 0 318 88153 132 2 0 186 chain 35043 chr19 59128983 + 52573473 52573925 LTR3A 482 - 0 462 76127 138 0 1 171 25 34 118 chain 34100 chr19 59128983 + 52593994 52594403 LTR3 431 + 6 417 77478 109 0 1 227 0 1 73 chain 30827 chr19 59128983 + 52599629 52600053 LTR10C 591 + 11 434 82818 22 2 0 264 1 0 59 25 27 51 chain 6165 chr19 59128983 + 52600618 52600734 MLT1B-int 1170 + 986 1094 183839 40 10 7 43 11 6 12 chain 3668 chr19 59128983 + 52601355 52601400 MLT1B 390 + 38 83 212434 45 chain 7116 chr19 59128983 + 52609299 52609405 MER4-int 2692 + 1490 1591 176642 17 6 1 83 chain 5566 chr19 59128983 + 52637510 52637594 U13_ 108 - 22 108 189415 38 6 8 40 chain 4378 chr19 59128983 + 52639014 52639092 Tigger2 2703 + 1391 1513 202221 35 10 39 11 0 15 22 chain 27179 chr19 59128983 + 52665768 52666182 LTR3A 482 - 62 470 95664 34 6 0 9 0 7 62 2 3 32 52 45 203 1 0 13 chain 15384 chr19 59128983 + 52676982 52677223 MSTA 426 + 184 426 140247 21 43 44 177 chain 26479 chr19 59128983 + 52679884 52680299 LTR3A 482 + 27 434 98129 82 0 1 5 0 1 28 0 1 83 43 44 30 13 0 38 0 1 32 0 7 3 6 0 23 1 0 28 chain 3679 chr19 59128983 + 52681916 52681958 LTR7 482 + 433 476 212249 20 0 1 22 chain 5582 chr19 59128983 + 52685191 52685291 L1MA9 1812 - 202 308 189253 31 1 0 12 0 9 18 8 6 30 chain 4911 chr19 59128983 + 52688356 52688423 MLT1A0 366 + 81 148 196152 4 0 1 5 1 0 57 chain 8394 chr19 59128983 + 52689205 52689345 FLAM_C 140 + 0 135 168886 47 6 10 54 1 0 4 14 6 14 chain 5076 chr19 59128983 + 52759222 52759279 MLT1C 463 + 46 103 194338 57 chain 8437 chr19 59128983 + 52762330 52762436 HY1 111 - 0 107 168642 27 0 1 79 chain 28129 chr19 59128983 + 52781967 52782809 L1PREC2 3366 - 117 831 92545 7 5 0 4 1 0 10 4 0 8 10 5 19 237 148 38 6 4 35 24 11 8 3 0 30 3 1 15 10 5 13 32 24 10 3 0 4 1 0 46 1 0 52 2 0 50 27 38 12 0 1 65 0 4 47 chain 28078 chr19 59128983 + 52796091 52796426 L1PA6 6164 - 20 356 92720 317 0 1 18 chain 36050 chr19 59128983 + 52803872 52804337 MER9B 498 - 0 470 74832 89 0 1 7 3 4 180 1 4 185 chain 263273 chr19 59128983 + 52805259 52809193 HERVK9-int 4720 - 1058 4684 15524 214 0 3 743 0 1 70 0 1 26 0 4 227 69 73 156 0 14 8 14 0 31 0 1 91 2 1 199 1 5 77 1 0 128 0 2 232 0 2 88 6 5 218 53 52 7 0 1 131 321 0 210 0 1 100 41 35 174 3 1 78 8 16 62 13 12 30 1 0 8 1 0 66 1 0 4 9 6 12 chain 37699 chr19 59128983 + 52810760 52811252 MER9B 498 - 5 498 72555 51 1 7 7 6 0 18 0 1 56 0 1 346 1 0 6 chain 9767 chr19 59128983 + 52866243 52866359 LTR9B 643 - 82 198 161755 116 chain 25652 chr19 59128983 + 52875883 52876190 AluY 311 + 11 310 101483 115 8 0 184 chain 12783 chr19 59128983 + 52880062 52880225 L1PB1 5432 - 778 938 149122 26 3 0 134 chain 79119 chr19 59128983 + 52924208 52925171 LTR5_Hs 974 - 0 974 43990 103 9 6 11 28 35 533 0 1 248 0 6 31 chain 55704 chr19 59128983 + 52987104 52987769 LTR5_Hs 974 - 4 671 55303 59 1 0 179 0 3 213 0 1 167 1 0 45 chain 31208 chr19 59128983 + 52987798 52988196 LTR7 482 + 0 469 82149 69 8 46 109 0 1 33 0 32 179 chain 9504 chr19 59128983 + 52988199 52988305 LTR7Y 441 - 0 106 163048 106 chain 71933 chr19 59128983 + 52988790 52989685 LTR5_Hs 974 + 0 910 47507 153 0 2 303 0 4 266 5 6 42 7 7 112 0 8 7 chain 17705 chr19 59128983 + 52991661 52991865 AluY 311 + 82 286 133688 41 1 0 9 0 1 153 chain 20543 chr19 59128983 + 53008173 53008429 AluSp 311 - 42 301 125492 30 4 7 222 chain 15808 chr19 59128983 + 53027962 53028224 AluSc5 308 + 11 283 138933 130 53 63 79 chain 77438 chr19 59128983 + 53061949 53062914 LTR5_Hs 974 + 0 974 44761 19 0 2 327 0 1 110 0 4 229 0 2 16 1 3 63 7 7 128 1 0 9 1 0 54 chain 8815 chr19 59128983 + 53064496 53064594 L1PA5 6144 - 4 102 166581 98 chain 23155 chr19 59128983 + 53064802 53065088 AluSp 311 - 14 300 114869 286 chain 78231 chr19 59128983 + 53080627 53081868 LTR13A 966 + 11 966 44397 123 0 22 441 0 8 27 320 0 290 3 6 19 0 1 18 chain 135991 chr19 59128983 + 53096033 53097606 SVA_D 2077 - 0 2061 26837 535 0 225 231 0 183 118 0 7 5 7 0 9 9 6 30 0 3 75 0 80 554 chain 3140 chr19 59128983 + 53111223 53111280 MER83 447 + 0 56 222178 34 11 10 12 chain 36568 chr19 59128983 + 53119602 53120417 L1PA8 5853 + 5319 5818 74145 205 309 0 40 1 0 45 2 0 56 15 14 9 1 0 52 2 1 19 1 0 58 chain 284906 chr19 59128983 + 53131447 53135063 HERVH-int 3825 + 0 3825 14357 47 1 2 284 1 0 197 1 0 15 0 1 24 2 1 9 1 0 12 4 0 7 0 32 14 9 7 4 1 0 26 26 1 15 2 1 22 30 9 10 0 1 38 0 1 63 0 3 5 1 2 236 6 4 131 16 0 461 4 31 370 11 16 584 13 12 227 1 0 145 9 11 39 8 218 260 0 2 149 0 1 75 chain 7980 chr19 59128983 + 53145781 53145884 MER4A 717 - 588 688 171168 6 3 0 94 chain 44852 chr19 59128983 + 53161801 53162351 LTR22 571 + 0 571 63231 251 3 4 124 0 1 59 0 16 83 0 3 30 chain 29213 chr19 59128983 + 53168755 53169131 LTR10F 562 + 0 490 87992 127 6 104 19 0 16 224 chain 74608 chr19 59128983 + 53170579 53171556 HERVIP10FH-int 2884 + 149 1126 46205 60 6 0 190 2 1 186 0 2 146 0 3 175 29 30 158 0 1 25 chain 41800 chr19 59128983 + 53173227 53173807 LTR10F 562 + 0 562 66897 229 1 4 29 25 0 8 0 1 127 4 7 93 3 2 21 0 1 40 chain 94731 chr19 59128983 + 53179314 53180394 SVA_D 2077 + 115 2077 38155 382 0 1 19 1 883 44 3 6 27 4 0 600 chain 39057 chr19 59128983 + 53191977 53192560 LTR61 567 + 3 561 70656 19 3 0 33 17 11 19 6 0 142 20 9 283 5 7 5 1 0 30 chain 40648 chr19 59128983 + 53197561 53198062 LTR2B 499 + 0 499 68372 14 1 0 57 1 0 237 0 1 10 1 0 180 chain 77072 chr19 59128983 + 53200992 53201959 LTR5_Hs 974 - 0 974 44931 103 2 0 37 8 15 329 31 0 11 0 32 161 0 1 285 chain 24239 chr19 59128983 + 53202567 53202982 LTR7B 505 - 0 504 109005 51 14 13 79 1 0 51 11 99 18 34 10 68 9 36 79 chain 139016 chr19 59128983 + 53223022 53224921 SVA_A 1864 - 2 1845 26300 266 4 0 23 0 2 207 4 20 17 38 10 115 8 5 53 1 0 87 7 4 73 4 1 47 11 11 16 40 0 20 1 0 81 13 49 176 0 2 70 40 0 348 3 0 5 6 9 40 0 11 75 chain 2136 chr19 59128983 + 53224003 53224043 SVA_A 1864 - 1032 1069 161729 24 9 6 7 chain 11422 chr19 59128983 + 53243699 53243894 LTR5B 1012 - 9 202 154597 41 1 0 64 11 9 10 21 22 47 chain 10256 chr19 59128983 + 53244010 53244211 LTR5B 1012 + 0 223 159345 49 1 0 5 39 49 25 1 0 6 7 21 68 chain 11261 chr19 59128983 + 53246651 53246826 MER4A1 472 + 0 178 155191 18 0 1 55 15 17 87 chain 249834 chr19 59128983 + 53248278 53251837 HERVK-int 6823 - 303 3749 16266 11 1 0 5 1 0 26 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 28 2 0 13 18 15 12 2 0 5 176 105 5 1 0 8 1 0 3 2 0 20 29 22 24 47 45 37 1 0 4 1 0 7 1 0 4 3 0 51 1 0 123 1 0 35 1 0 100 1 0 23 5 4 110 5 6 77 1 0 13 1 0 41 11 1 315 1 5 6 0 4 145 1 0 461 0 4 661 0 11 542 82 82 163 chain 265463 chr19 59128983 + 53253718 53256972 HERVK9-int 4720 - 484 4684 15417 88 0 1 222 1 0 292 1 0 172 13 14 387 1 0 543 0 4 32 0 1 60 0 924 134 0 1 335 0 24 842 1 0 28 4 3 5 1 0 66 1 0 4 8 5 13 chain 40393 chr19 59128983 + 53258314 53258793 MER9a1 513 - 0 513 68749 456 0 34 23 chain 25932 chr19 59128983 + 53263798 53264252 LTR7B 505 - 9 504 100293 26 30 29 79 1 0 51 4 92 24 66 11 69 1 11 103 chain 74985 chr19 59128983 + 53271988 53272991 LTR13 1007 + 0 1007 46020 73 6 1 6 0 3 298 8 9 74 0 3 10 3 0 151 2 1 53 1 5 13 0 3 112 0 1 140 22 20 31 chain 38442 chr19 59128983 + 53293035 53293475 LTR7 482 - 11 482 71527 193 1 32 246 chain 8372 chr19 59128983 + 53295519 53295692 MER4A1 472 + 0 178 169016 12 0 1 8 4 5 50 7 9 37 29 30 26 chain 172103 chr19 59128983 + 53314170 53316034 SVA_E 1901 + 0 1901 21800 145 3 0 179 3 0 493 1 0 19 1 0 91 1 47 121 1 0 806 chain 29386 chr19 59128983 + 53323361 53323669 AluYb8 318 - 10 318 87137 308 chain 12583 chr19 59128983 + 53332491 53332625 L1PA2 6032 - 24 158 149910 134 chain 84734 chr19 59128983 + 53337983 53338923 LTR13A 966 - 0 940 41623 940 chain 109783 chr19 59128983 + 53402330 53406398 Harlequin-int 5206 - 77 4897 34261 178 8 8 199 2548 2488 27 0 12 252 0 6 25 5 12 257 1 779 269 1 0 130 2 0 124 0 9 29 0 3 13 chain 36561 chr19 59128983 + 53407626 53408098 LTR2B 499 - 1 490 74157 181 1 0 8 0 1 175 3 22 46 1 0 51 1 0 5 chain 18692 chr19 59128983 + 53408435 53408695 LTR7 482 + 125 419 130967 100 0 1 30 8 39 17 0 1 52 1 2 52 chain 115839 chr19 59128983 + 53422448 53423743 SVA_E 1901 + 0 1686 32517 144 2 0 59 0 11 110 3 0 89 0 39 347 0 296 7 0 49 70 0 1 464 chain 33328 chr19 59128983 + 53426881 53427374 LTR2B 499 + 9 499 78690 5 1 0 55 5 0 41 0 19 142 0 1 4 0 3 17 28 1 18 0 4 89 6 9 82 chain 83104 chr19 59128983 + 53434883 53435849 LTR13A 966 + 0 966 42286 966 chain 23513 chr19 59128983 + 53437807 53438094 AluSp 311 - 24 311 113057 287 chain 23645 chr19 59128983 + 53475626 53475928 AluY 311 + 1 306 112334 83 0 4 42 2 3 142 0 2 4 4 0 25 chain 40985 chr19 59128983 + 53523645 53524280 L1PA13 3608 + 224 892 67928 54 11 17 118 1 0 15 1 0 17 2 0 16 6 2 18 1 0 19 18 20 12 1 0 99 2 0 97 0 5 35 25 56 21 0 1 46 chain 71848 chr19 59128983 + 53524723 53525530 L1PA4 6152 - 419 1233 47541 429 1 5 116 0 3 261 chain 36339 chr19 59128983 + 53525530 53525945 L1PA4 6152 + 5734 6152 74449 272 0 3 143 chain 63586 chr19 59128983 + 53535730 53536581 HERVL-int 5654 + 3521 4394 51194 181 1 10 197 29 23 13 1 5 325 1 0 27 0 16 76 chain 21984 chr19 59128983 + 53537069 53537340 AluSp 311 - 11 283 120297 29 5 6 237 chain 10972 chr19 59128983 + 53538976 53539156 MER50 708 + 391 570 156309 33 17 16 41 1 0 21 4 5 63 chain 27765 chr19 59128983 + 53544216 53544603 MER4A1_ 611 - 225 605 93821 54 1 0 207 4 3 23 7 0 55 0 1 20 1 2 15 chain 8284 chr19 59128983 + 53556542 53556643 L1PREC2 3366 - 1368 1469 169496 101 chain 8322 chr19 59128983 + 53556653 53556757 L1PREC2 3366 + 1786 1890 169272 104 chain 19247 chr19 59128983 + 53558797 53559750 MER50 708 + 392 694 129388 40 0 8 44 1 0 4 18 19 13 7 0 49 646 0 12 6 0 113 chain 5932 chr19 59128983 + 53563749 53563851 HSMAR2 1300 - 536 639 185867 12 1 0 54 15 17 20 chain 4971 chr19 59128983 + 53568000 53568064 MLT1D 503 + 434 499 195461 40 0 1 24 chain 11688 chr19 59128983 + 53583000 53583354 L1PA17 2846 + 1347 1545 153530 32 3 7 12 162 1 7 1 0 22 6 8 109 chain 3294 chr19 59128983 + 53615674 53615711 tRNA-Gly-GGA 38 - 1 38 219100 37 chain 29463 chr19 59128983 + 53616479 53616787 AluYg6 310 + 0 308 86785 308 chain 16403 chr19 59128983 + 53634238 53634444 MER30 238 + 34 238 137197 70 8 6 128 chain 64079 chr19 59128983 + 53646490 53647189 L1PA4 6152 - 9 708 50975 699 chain 23249 chr19 59128983 + 53670264 53670553 AluSp 311 - 21 311 114446 45 9 10 235 chain 64425 chr19 59128983 + 53672784 53673492 L1PA3long 6157 - 0 704 50829 14 3 0 120 1 0 570 chain 8260 chr19 59128983 + 53674095 53674229 Tigger2b_Pri 1066 - 64 190 169630 68 1 0 16 12 5 37 chain 4463 chr19 59128983 + 53675531 53675588 L1MA7 2200 - 544 601 201189 57 chain 81536 chr19 59128983 + 53687918 53688880 LTR13 1007 - 38 1007 42964 6 0 2 145 0 1 130 0 2 68 0 1 224 8 9 381 chain 164951 chr19 59128983 + 53689206 53691824 SVA_E 1901 - 5 1901 22660 751 1 0 186 2 1 27 816 100 14 1 0 672 3 0 145 chain 36899 chr19 59128983 + 53690193 53690930 SVA_F 1814 - 523 1439 73660 17 1 0 153 1 0 14 99 0 145 47 14 24 78 0 43 0 1 25 41 389 22 0 39 7 4 7 16 chain 4762 chr19 59128983 + 53690379 53690439 SVA_F 1814 - 898 1039 128582 35 3 0 8 1 85 13 chain 3125 chr19 59128983 + 53690637 53690670 SVA_F 1814 - 642 675 128375 33 chain 7387 chr19 59128983 + 53690694 53690772 SVA_F 1814 - 699 777 128375 78 chain 2902 chr19 59128983 + 53690849 53690881 SVA_F 1814 - 877 909 227021 32 chain 90508 chr19 59128983 + 53692461 53693467 LTR13 1007 - 0 1007 39471 621 0 1 385 chain 7832 chr19 59128983 + 53696714 53696820 AluSq10 312 + 200 303 172119 65 0 1 16 4 0 21 chain 22787 chr19 59128983 + 53697998 53698330 AluY 311 + 0 296 116647 51 36 1 14 1 0 5 4 7 91 5 0 94 0 2 31 chain 392830 chr19 59128983 + 53709190 53714016 L1PA7 6471 - 10 6471 10368 139 16 15 22 1 0 77 0 3 125 19 10 422 0 1598 94 1 0 31 0 3 315 0 1 361 0 12 502 0 1 96 0 2 335 0 7 204 0 1 191 3 2 450 1 4 61 0 15 118 0 4 219 1 0 26 16 15 77 16 16 677 0 1 5 9 8 196 chain 125684 chr19 59128983 + 53725484 53726900 SVA_D 2077 + 0 2077 29194 20 4 0 522 0 80 145 0 40 80 0 535 307 0 10 338 chain 25723 chr19 59128983 + 53728918 53729264 MER66A 478 + 33 380 101204 321 11 12 14 chain 4581 chr19 59128983 + 53749599 53749649 L1MA10 1535 + 874 924 199856 50 chain 74733 chr19 59128983 + 53760851 53761907 LTR13 1007 + 0 1007 46147 73 2 0 83 0 1 224 4 5 109 0 1 5 7 11 18 0 4 98 1 0 51 27 28 135 61 3 106 8 10 12 2 0 30 chain 113911 chr19 59128983 + 53772640 53773916 SVA_D 2077 - 0 2019 33116 445 5 4 153 0 624 46 0 80 75 0 40 552 chain 16176 chr19 59128983 + 53783341 53783646 L1PB1 5432 - 164 452 137824 31 2 1 15 3 2 17 15 16 19 2 0 8 5 1 12 5 4 4 1 0 23 11 0 10 0 3 122 chain 7737 chr19 59128983 + 53797532 53797627 MER107 203 - 103 200 172677 55 0 2 40 chain 9509 chr19 59128983 + 53806512 53806627 L1PB1 5432 + 4980 5095 163021 115 chain 28995 chr19 59128983 + 53820800 53821104 AluYa5 310 - 6 310 89011 304 chain 2872 chr19 59128983 + 53828166 53828201 MER21C 908 - 277 312 227510 35 chain 18978 chr19 59128983 + 53830752 53831059 MER51B 395 - 0 329 130163 61 22 38 51 1 0 31 5 6 105 7 13 24 chain 3345 chr19 59128983 + 53832644 53832693 LTR5A 1029 - 970 1018 218133 9 2 1 38 chain 10915 chr19 59128983 + 53861086 53861221 MER41A 554 + 216 351 156539 135 chain 11723 chr19 59128983 + 53862160 53862292 LTR7B 505 + 0 133 153371 93 0 1 39 chain 199215 chr19 59128983 + 53862347 53866076 HERVK-int 6823 + 3792 6414 19268 77 0 5 662 3 1 172 1011 0 405 6 5 34 1 5 110 0 3 238 6 5 13 1 0 194 5 4 23 1 0 100 1 0 36 1 0 122 1 0 51 3 0 4 1 0 9 4 2 74 3 1 7 1 0 24 17 11 11 1 0 20 203 126 12 1 0 13 4 2 13 5 3 25 chain 89876 chr19 59128983 + 53863266 53864272 LTR13 1007 - 0 1007 39691 609 0 1 4 1 0 7 0 1 385 chain 39713 chr19 59128983 + 53891568 53892069 LTR2C 499 - 0 499 69739 178 0 4 125 26 20 172 chain 28333 chr19 59128983 + 53899558 53900048 LTR61 567 - 0 567 91825 30 21 20 56 2 1 156 1 2 13 36 105 95 3 0 23 6 17 4 0 1 18 7 7 19 chain 15202 chr19 59128983 + 53902344 53902512 L1PA3long 6157 - 4 173 140772 150 0 1 18 chain 3858 chr19 59128983 + 53929219 53929265 LTR13A 966 + 875 922 209474 11 0 1 35 chain 32105 chr19 59128983 + 53946592 53947027 LTR14B 630 - 0 449 80679 161 1 5 72 22 32 179 chain 33537 chr19 59128983 + 53984080 53984566 LTR14B 630 - 2 620 78337 258 0 10 37 8 0 45 7 0 6 1 0 5 0 8 39 1 8 8 0 115 6 0 8 19 1 0 38 0 1 7 chain 8989 chr19 59128983 + 53999773 53999897 MER4A 717 + 1 136 165664 16 0 14 96 3 0 9 chain 24609 chr19 59128983 + 54018759 54019039 AluSp 311 - 20 300 106939 280 chain 35552 chr19 59128983 + 54021784 54022356 LTR62 707 - 124 707 75474 125 2 0 67 1 0 31 91 112 140 7 0 108 chain 161538 chr19 59128983 + 54027024 54028997 L1PA6 6164 - 3 1949 23124 152 3 4 1480 0 5 11 0 4 193 113 76 21 chain 3179 chr19 59128983 + 54033563 54033597 MSTA 426 - 343 377 221362 34 chain 3370 chr19 59128983 + 54033604 54033640 MSTA 426 - 341 377 217667 36 chain 22993 chr19 59128983 + 54039881 54040161 AluSp 311 + 10 286 115653 118 4 0 158 chain 24886 chr19 59128983 + 54044355 54044659 AluSp 311 - 6 311 105433 112 0 2 90 3 2 99 chain 24546 chr19 59128983 + 54046067 54046360 AluSp 311 - 16 309 107275 293 chain 25804 chr19 59128983 + 54059219 54059516 AluY 311 + 3 302 100849 128 0 2 169 chain 10160 chr19 59128983 + 54083679 54083803 MER41C 542 - 0 124 159806 124 chain 60284 chr19 59128983 + 54090222 54090870 SVA_D 2077 + 1417 2075 52690 312 0 10 336 chain 6275 chr19 59128983 + 54093064 54094679 L1P4 1494 - 549 938 182969 8 0 2 36 1498 270 73 chain 13725 chr19 59128983 + 54099623 54099779 L1PA3long 6157 + 6001 6157 145528 156 chain 6828 chr19 59128983 + 54145822 54145902 LTR22 571 + 475 555 178736 80 chain 10415 chr19 59128983 + 54152843 54154037 MER57A1 433 + 0 433 158620 113 1043 282 38 chain 9227 chr19 59128983 + 54156938 54157044 U6 107 + 0 106 164410 106 chain 28353 chr19 59128983 + 54227614 54227937 L1PA4 6152 - 0 320 91751 6 3 0 314 chain 24475 chr19 59128983 + 54270054 54270368 AluSp 311 - 7 311 107674 176 1 0 8 9 0 120 chain 39549 chr19 59128983 + 54277665 54278219 LTR6B 557 - 0 557 69958 22 0 1 33 0 1 6 49 50 37 0 5 7 4 0 32 3 4 37 1 0 275 1 0 47 chain 24068 chr19 59128983 + 54280466 54280753 AluSp 311 + 0 284 109937 132 3 0 152 chain 23372 chr19 59128983 + 54284140 54284436 AluSg7 307 - 13 307 113806 87 1 0 69 7 6 132 chain 13228 chr19 59128983 + 54285150 54285307 L1PA7 6471 + 6311 6468 147360 157 chain 22947 chr19 59128983 + 54321645 54321925 AluSc8 310 + 6 291 115877 120 1 6 159 chain 41061 chr19 59128983 + 54334657 54335108 LTR7 482 + 0 482 67822 265 0 31 186 chain 276336 chr19 59128983 + 54335117 54338893 HERVH-int 3825 + 7 3825 14852 455 0 118 24 6 36 10 2 22 25 1 0 14 42 0 45 0 1 6 0 2 14 0 3 51 0 3 564 51 44 21 344 6 203 15 42 107 1 0 192 0 10 84 0 2 145 1 0 14 0 1 821 0 3 25 8 218 262 0 2 223 chain 41286 chr19 59128983 + 54340151 54340602 LTR7 482 + 0 482 67547 265 0 31 186 chain 22950 chr19 59128983 + 54341309 54341826 L1PB1 5432 + 4933 5409 115860 89 6 8 73 7 0 11 5 0 23 1 0 5 3 2 14 24 18 44 18 16 46 7 6 8 1 0 6 53 39 5 2 0 24 1 0 22 2 1 11 1 0 5 chain 81057 chr19 59128983 + 54341879 54342846 LTR5_Hs 974 + 0 974 43160 285 0 1 536 4 12 37 2 0 103 chain 22459 chr19 59128983 + 54342847 54343129 AluSp 311 + 14 297 118205 262 5 6 15 chain 24852 chr19 59128983 + 54349447 54349737 AluY 311 + 0 288 105613 31 6 3 139 0 1 114 chain 5642 chr19 59128983 + 54350061 54350129 Tigger2a 444 - 167 235 188641 68 chain 19753 chr19 59128983 + 54353483 54353746 AluSp 311 - 20 288 127949 140 0 3 6 3 0 10 1 0 17 7 13 79 chain 25158 chr19 59128983 + 54356479 54356764 AluSp 311 - 15 300 103965 285 chain 79986 chr19 59128983 + 54380566 54381526 LTR13A 966 - 0 966 43602 86 1 3 253 0 4 95 0 3 6 9 6 510 chain 4157 chr19 59128983 + 54470757 54470808 MER58B 340 - 141 192 205145 51 chain 6138 chr19 59128983 + 54478540 54478615 L1MB3 1562 - 668 744 184096 27 0 1 48 chain 3475 chr19 59128983 + 54517702 54517739 L1PB 1623 - 799 836 215722 37 chain 2438 chr19 59128983 + 54523290 54523316 MER53 195 - 145 171 233883 26 chain 9477 chr19 59128983 + 54530100 54530276 MER5A 189 + 11 168 163172 89 4 0 12 43 28 28 chain 14510 chr19 59128983 + 54531837 54531993 L1PA3long 6157 + 6001 6157 142859 156 chain 14839 chr19 59128983 + 54532080 54532353 L1PB1 5432 - 13 262 141814 6 1 0 9 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 6 4 16 19 8 4 1 0 16 1 0 43 1 0 16 2 1 50 chain 60340 chr19 59128983 + 54538189 54538962 MER4E1 777 - 8 777 52661 55 3 1 155 17 21 290 2 0 222 4 0 25 chain 792 chr19 59128983 + 54539828 54539916 THE1B 368 - 62 159 155002 63 7 15 14 0 1 4 chain 82486 chr19 59128983 + 54540020 54540975 LTR13A 966 + 0 953 42545 76 0 4 582 6 0 291 chain 855 chr19 59128983 + 54540991 54541086 THE1B 368 - 260 355 155002 95 chain 22271 chr19 59128983 + 54583481 54583748 AluY 311 + 10 296 119028 97 4 21 5 0 2 161 chain 11370 chr19 59128983 + 54590862 54591005 L1PA6 6164 - 4 161 154816 6 0 4 42 0 10 95 chain 21299 chr19 59128983 + 54604879 54605141 AluSp 311 + 0 260 122865 75 1 0 36 1 0 149 chain 8842 chr19 59128983 + 54655168 54655266 BC200 147 + 5 103 166420 98 chain 25967 chr19 59128983 + 54671506 54671802 AluSq4 311 + 0 295 100146 132 1 0 163 chain 3505 chr19 59128983 + 54700623 54700685 L1MB8 1703 - 284 345 215279 17 8 7 37 chain 62569 chr19 59128983 + 54718148 54718819 SVA_D 2077 - 0 671 51640 671 chain 21333 chr19 59128983 + 54719485 54719756 AluSg7 307 - 15 287 122744 150 10 11 111 chain 15875 chr19 59128983 + 54812090 54812445 L1PB1 5432 + 5107 5427 138721 8 5 0 21 10 8 14 4 0 10 2 0 51 1 0 12 6 5 44 1 0 16 1 0 4 2 0 11 8 0 13 27 22 24 1 0 20 6 5 9 1 0 5 0 2 11 2 0 5 chain 4312 chr19 59128983 + 54826403 54826449 L1PREC2 3366 + 1122 1168 203075 46 chain 26060 chr19 59128983 + 54832518 54832918 LTR7 482 - 0 482 99791 48 13 15 95 3 12 4 0 1 11 0 31 29 11 12 109 9 47 68 chain 89592 chr19 59128983 + 54833653 54834659 LTR13 1007 - 0 1007 39783 617 8 9 381 chain 16761 chr19 59128983 + 54839998 54840357 THE1B 368 + 0 368 136225 101 22 16 14 7 11 35 70 82 47 14 13 49 chain 5739 chr19 59128983 + 54860812 54860882 L1P4e 1373 + 24 94 187739 70 chain 23412 chr19 59128983 + 54879068 54879358 AluY 311 + 0 289 113579 30 4 1 101 0 1 148 0 1 7 chain 29194 chr19 59128983 + 54879364 54879678 AluYb9 318 - 6 318 88079 8 2 0 304 chain 32134 chr19 59128983 + 54915063 54915525 LTR7B 505 - 0 503 80634 51 14 13 82 1 0 75 0 2 29 22 16 5 1 0 10 0 38 69 0 10 103 chain 13027 chr19 59128983 + 54916113 54916298 MER4E 760 - 249 441 148149 37 2 1 29 1 0 56 0 11 16 2 0 42 chain 24374 chr19 59128983 + 54916298 54916597 AluSp 311 + 0 297 108230 36 1 0 89 1 0 172 chain 4403 chr19 59128983 + 54925262 54925324 HAL1-2a_MD 234 + 87 231 201900 30 0 85 23 3 0 6 chain 3440 chr19 59128983 + 54925460 54925519 HAL1-2a_MD 234 + 24 95 216389 31 5 11 17 0 6 6 chain 60832 chr19 59128983 + 54936065 54936822 LTR17 781 - 0 781 52415 6 0 1 36 1 2 14 5 27 271 0 1 96 1 0 327 chain 12787 chr19 59128983 + 55029143 55029306 L1PA5 6144 + 5979 6142 149104 4 0 1 5 0 1 6 0 1 134 3 0 11 chain 19343 chr19 59128983 + 55039460 55039705 THE1D-int 1627 - 5 251 129101 66 1 2 178 chain 25921 chr19 59128983 + 55056197 55057338 LTR7B 505 + 0 491 100333 108 0 10 43 0 2 8 159 37 27 603 23 53 9 50 80 14 13 37 chain 2583 chr19 59128983 + 55056377 55056461 LTR7B 505 + 262 312 231865 22 41 7 21 chain 2456 chr19 59128983 + 55056550 55056576 LTR7B 505 + 263 289 233629 26 chain 2040 chr19 59128983 + 55057097 55057125 LTR7B 505 + 208 234 238275 19 2 0 7 chain 22188 chr19 59128983 + 55059556 55059856 L1PA8 5853 - 0 300 119409 92 4 3 10 0 1 6 1 4 36 0 1 21 1 0 69 2 0 46 1 0 11 chain 11281 chr19 59128983 + 55068074 55068196 L1PA4 6152 + 6016 6138 155123 122 chain 170914 chr19 59128983 + 55089602 55091659 L1PA6 6164 - 3 2084 21955 114 0 1 106 1 2 54 0 2 109 0 3 444 1 11 147 0 5 915 0 2 166 chain 377665 chr19 59128983 + 55091667 55097365 L1HS 6032 - 0 6022 10826 1435 215 639 28 0 5 357 1 0 8 0 1 164 0 3 5 3 0 326 1 0 610 0 4 179 0 4 75 2 0 270 1 0 4 0 1 608 42 42 91 156 147 61 51 52 47 10 9 7 0 1 12 25 0 58 180 72 177 1 2 60 69 61 42 151 149 51 37 50 39 1 28 38 chain 20190 chr19 59128983 + 55093102 55093317 L1HS 6032 + 4337 4552 125701 215 chain 33841 chr19 59128983 + 55124650 55125017 L1PA2 6032 + 5658 6025 77867 367 chain 6385 chr19 59128983 + 55127773 55127864 MER4E 760 + 646 752 182139 32 1 15 21 0 1 37 chain 40612 chr19 59128983 + 55139318 55139804 LTR10C 591 - 0 489 68416 5 0 1 76 0 2 405 chain 24375 chr19 59128983 + 55148696 55148997 AluSc5 308 + 0 300 108224 149 1 2 131 2 0 18 chain 38062 chr19 59128983 + 55158225 55158672 L1PA4 6152 - 0 454 72041 6 0 5 136 5 7 300 chain 5714 chr19 59128983 + 55158672 55158735 L1PA4 6152 + 5553 5616 187978 63 chain 34801 chr19 59128983 + 55170445 55170862 L1PA7 6471 + 6053 6470 76475 417 chain 37994 chr19 59128983 + 55191432 55192527 PRIMA4_LTR 623 + 0 605 72141 38 12 12 125 0 23 36 465 0 22 0 2 61 1 0 29 1 0 20 16 18 41 51 0 119 5 7 37 2 1 14 chain 15826 chr19 59128983 + 55194010 55194194 PABL_A 660 - 0 184 138870 184 chain 15304 chr19 59128983 + 55202146 55202344 L1PA7 6471 + 6267 6461 140480 17 0 1 30 6 1 145 chain 13664 chr19 59128983 + 55203118 55203296 LTR1 825 - 611 808 145727 103 0 7 20 5 17 50 chain 62884 chr19 59128983 + 55205268 55205999 L1PA6 6164 - 2 729 51497 6 4 0 721 chain 212432 chr19 59128983 + 55374312 55376646 L1PA3long 6157 - 0 2334 18332 2334 chain 8608 chr19 59128983 + 55380395 55380491 U6 107 - 2 98 167678 96 chain 25488 chr19 59128983 + 55384151 55384443 AluY 311 + 4 295 102276 122 1 0 169 chain 23910 chr19 59128983 + 55393045 55393339 AluY 311 + 0 285 110860 15 1 0 117 0 1 47 9 0 105 chain 31793 chr19 59128983 + 55405660 55406073 LTR7 482 - 0 482 81183 185 0 31 17 1 0 28 0 1 105 8 46 69 chain 273436 chr19 59128983 + 55407950 55411511 HERVH-int 3825 - 0 3794 14998 307 1 0 184 4 214 510 0 14 497 4 13 26 6 0 56 0 4 220 0 1 39 12 1 198 0 3 108 9 0 651 1 0 19 203 0 16 6 5 21 5 104 8 5 0 18 0 56 12 0 35 8 1 27 84 1 2 31 1 0 50 0 2 58 0 11 181 chain 23586 chr19 59128983 + 55411551 55411957 LTR7 482 - 7 482 112653 194 4 35 21 0 1 35 57 6 31 20 109 4 1 0 39 chain 29537 chr19 59128983 + 55416727 55417158 LTR15 485 - 54 485 86489 12 1 0 22 2 1 111 0 4 43 1 2 22 1 0 63 0 2 21 4 0 36 1 7 9 7 1 75 chain 60158 chr19 59128983 + 55419344 55420010 SVA_B 1603 - 0 703 52746 6 2 0 583 0 39 24 0 1 24 1 0 26 chain 11176 chr19 59128983 + 55425600 55425723 L1PA4 6152 - 20 143 155537 123 chain 90468 chr19 59128983 + 55430506 55431531 LTR13 1007 - 0 1007 39477 577 19 1 429 chain 24064 chr19 59128983 + 55448299 55448599 AluY 311 + 1 298 109960 44 6 0 87 1 2 141 0 2 21 chain 22022 chr19 59128983 + 55451935 55452208 AluSg7 307 + 23 294 120134 41 2 0 230 chain 67500 chr19 59128983 + 55455103 55456032 LTR5_Hs 974 + 0 974 49448 168 11 20 271 0 4 12 0 5 146 10 9 23 1 2 9 8 10 13 0 2 82 7 7 34 5 6 9 0 22 120 chain 78006 chr19 59128983 + 55461660 55462617 LTR5_Hs 974 - 9 974 44508 73 0 2 19 8 6 31 11 18 530 0 1 285 chain 6808 chr19 59128983 + 55464120 55464535 MER41A 554 + 0 170 107582 14 0 1 80 249 0 25 1 4 46 chain 36099 chr19 59128983 + 55464540 55465069 LTR2 463 - 0 463 74765 88 12 13 200 0 5 61 73 1 95 chain 3068 chr19 59128983 + 55465426 55465613 MER41A 554 + 199 387 107582 158 3 4 26 chain 36106 chr19 59128983 + 55470072 55470881 LTR2B 499 - 0 499 74760 29 1 0 144 0 4 60 8 10 175 315 0 14 1 0 47 0 1 15 chain 79716 chr19 59128983 + 55482190 55483058 L1PA2 6032 - 2 870 43728 868 chain 19494 chr19 59128983 + 55488565 55488804 AluSp 311 + 58 297 128668 239 chain 20976 chr19 59128983 + 55489971 55490231 AluSc 308 + 28 297 124006 32 0 8 40 2 3 186 chain 34402 chr19 59128983 + 55510002 55510378 SVA_D 2077 - 0 377 77053 224 0 1 152 chain 11632 chr19 59128983 + 55510399 55510527 SVA_F 1814 - 698 826 153765 128 chain 29600 chr19 59128983 + 55518196 55518605 LTR7 482 - 0 482 86210 49 12 14 129 0 32 33 0 1 109 8 46 69 chain 281735 chr19 59128983 + 55519859 55523381 HERVH-int 3825 - 0 3825 14549 225 0 2 149 39 39 43 37 247 394 0 4 585 0 3 113 1 15 215 8 14 61 4 31 144 0 1 4 1 0 312 0 1 380 2 0 64 1 0 77 1 0 46 22 53 14 1 0 9 1 0 10 1 0 24 0 1 4 1 0 11 1 0 197 1 0 110 0 11 154 1 4 54 chain 25817 chr19 59128983 + 55523383 55523791 LTR7 482 - 0 482 100798 49 12 14 48 5 6 53 1 0 4 0 1 17 0 1 22 11 43 109 23 61 54 chain 16137 chr19 59128983 + 55528161 55528426 AluSc 308 + 20 298 137944 44 2 0 114 1 33 26 33 23 24 7 0 14 chain 55656 chr19 59128983 + 55533793 55534441 L1PA10 4194 + 3502 4150 55335 584 0 3 27 3 0 34 chain 3384 chr19 59128983 + 55547458 55547511 L1PB3 3668 + 3511 3562 217393 17 3 1 33 chain 23355 chr19 59128983 + 55548703 55548970 AluSp 311 - 10 277 113901 267 chain 3957 chr19 59128983 + 55561991 55562045 MLT1B 390 - 227 283 208022 16 1 3 37 chain 83380 chr19 59128983 + 55571057 55572057 LTR5A 1029 + 0 1029 42166 13 0 4 116 1 14 621 15 21 156 0 6 78 chain 37143 chr19 59128983 + 55618790 55619209 L1PA5 6144 + 5704 6132 73318 157 0 2 136 0 7 126 chain 27094 chr19 59128983 + 55634172 55634590 LTR7B 505 + 0 505 95959 43 2 1 62 1 11 54 19 32 32 4 25 51 0 41 40 0 4 45 10 8 4 0 1 51 chain 234391 chr19 59128983 + 55634590 55638426 HERVH-int 3825 + 0 3825 17070 333 1 0 77 21 20 27 14 18 10 1 0 28 1 266 48 11 14 385 51 21 185 22 13 107 0 1 62 1 20 451 13 18 304 0 1 5 5 4 170 309 1 73 14 15 142 0 367 57 345 17 150 39 39 233 0 2 141 chain 25066 chr19 59128983 + 55640523 55640888 LTR7B 505 + 0 487 104474 108 0 10 43 0 2 8 13 81 43 0 2 14 9 50 80 14 13 33 chain 3807 chr19 59128983 + 55674091 55674137 MER2 342 + 161 207 210273 46 chain 9304 chr19 59128983 + 55683344 55683462 AluSp 311 + 178 294 164043 108 2 0 8 chain 6459 chr19 59128983 + 55703832 55703907 Tigger2a 444 + 304 379 181566 75 chain 4523 chr19 59128983 + 55704899 55705029 MER20 218 + 45 173 200517 32 59 58 21 1 0 17 chain 22246 chr19 59128983 + 55707478 55707760 AluSq 315 + 5 289 119136 123 0 2 131 0 3 6 3 0 19 chain 3692 chr19 59128983 + 55712931 55712977 MER3 215 + 156 209 212048 11 0 7 35 chain 6504 chr19 59128983 + 55730644 55730723 MLT1B 390 - 268 347 181208 79 chain 2947 chr19 59128983 + 55804381 55804412 U2 167 - 136 167 226138 31 chain 42405 chr19 59128983 + 55923223 55923929 L1PB2 3958 + 2946 3836 66141 111 55 254 42 9 8 16 12 10 33 2 0 14 7 4 13 3 0 94 1 2 70 1 0 64 1 0 49 0 3 20 2 0 21 2 1 38 4 1 22 chain 24796 chr19 59128983 + 55930166 55930474 AluSc5 308 + 0 308 105912 149 1 2 106 1 0 51 chain 2109 chr19 59128983 + 55931462 55931544 MER52C 1267 + 892 958 237567 16 14 0 8 28 26 16 chain 3461 chr19 59128983 + 55932446 55932487 MLT1B 390 + 281 321 215986 36 1 0 4 chain 5775 chr19 59128983 + 56016932 56016999 MLT1D 503 - 155 222 187387 67 chain 5913 chr19 59128983 + 56028023 56028088 AluJr4 308 + 200 265 186068 65 chain 22847 chr19 59128983 + 56044743 56045056 AluYb8 318 + 11 318 116363 52 2 0 68 27 23 164 chain 27614 chr19 59128983 + 56105783 56106088 AluY 311 + 2 308 94312 124 0 1 181 chain 39084 chr19 59128983 + 56234034 56234516 L1PA7 6471 + 5981 6464 70626 267 0 1 215 chain 40944 chr19 59128983 + 56240603 56241063 L1PA5 6144 - 0 460 67982 460 chain 6742 chr19 59128983 + 56245135 56245285 MER4E 760 + 334 498 179376 26 39 54 24 7 6 54 chain 24796 chr19 59128983 + 56254271 56254562 AluSg7 307 - 16 307 105913 291 chain 13871 chr19 59128983 + 56261789 56262101 L1PB1 5432 - 35 317 145004 6 1 0 20 2 1 23 3 1 12 33 21 13 2 0 4 1 0 16 2 1 42 1 0 16 2 1 51 2 0 10 17 12 13 2 1 18 chain 30488 chr19 59128983 + 56268366 56268750 L1PA7 6471 + 6087 6470 83453 254 1 0 129 chain 8453 chr19 59128983 + 56275397 56275519 THE1D-int 1627 - 1502 1626 168550 102 6 8 14 chain 30797 chr19 59128983 + 56278364 56278747 L1PA7 6471 + 6087 6469 82871 256 1 0 126 chain 7062 chr19 59128983 + 56285403 56285490 MSTA-int 1630 - 1505 1592 177019 87 chain 2734 chr19 59128983 + 56285994 56286077 L1MB3 1562 - 10 92 229680 19 38 37 26 chain 3889 chr19 59128983 + 56288095 56288206 LTR45C 530 - 60 175 209045 23 19 21 28 25 27 16 chain 43216 chr19 59128983 + 56313527 56314393 L1PREC2 3366 + 2215 3042 65152 115 11 14 15 4 9 15 14 0 66 0 1 4 13 12 9 1 0 6 1 8 39 5 8 30 0 2 24 1 0 19 0 1 95 1 0 6 1 2 8 0 1 28 17 11 36 15 14 37 1 0 3 3 0 14 29 21 17 6 1 16 2 0 20 46 29 27 14 12 32 chain 37781 chr19 59128983 + 56328382 56329172 L1PB1 5432 + 4669 5417 72440 28 26 6 5 1 0 89 0 1 6 4 0 6 0 3 64 0 9 7 0 1 5 1 0 102 0 9 8 6 2 78 76 63 6 2 0 53 14 16 46 1 0 14 24 12 18 50 44 21 1 0 13 1 0 8 1 0 5 chain 7953 chr19 59128983 + 56330186 56330384 LTR55 556 + 3 217 171311 19 2 16 11 72 74 94 chain 557205 chr19 59128983 + 56333767 56339795 L1PA2 6032 + 2 6032 590 2253 0 2 3775 chain 17364 chr19 59128983 + 56350344 56350635 L1PA8 5853 - 6 288 134613 85 3 2 19 2 1 39 25 23 7 1 0 20 3 1 42 2 0 43 chain 5465 chr19 59128983 + 56355101 56355179 MADE1 96 + 0 96 190357 33 4 22 41 chain 123488 chr19 59128983 + 56356395 56357762 L1PA4 6152 - 0 1375 29883 6 0 2 836 0 4 196 0 2 329 chain 5005 chr19 59128983 + 56402074 56402151 Tigger4a 237 + 143 237 195093 43 6 23 28 chain 3219 chr19 59128983 + 56404434 56404472 MADE1 96 - 11 49 220587 38 chain 10618 chr19 59128983 + 56426104 56426282 L1MA8 2339 - 360 530 157739 19 2 0 28 14 10 82 11 9 22 chain 85602 chr19 59128983 + 56440101 56441146 L1PA7 6471 + 5406 6466 41306 25 0 1 160 7 11 20 3 7 68 0 2 105 0 3 485 5 6 167 chain 40318 chr19 59128983 + 56449158 56449696 MER41A 554 + 1 552 68858 185 6 7 188 0 1 13 2 3 7 0 4 21 0 1 38 0 5 47 0 1 4 1 0 26 chain 53167 chr19 59128983 + 56470985 56471646 PABL_B 668 - 9 668 56912 92 2 0 14 3 4 312 1 0 237 chain 25460 chr19 59128983 + 56477026 56477316 L1PA7 6471 - 4 294 102413 290 chain 3957 chr19 59128983 + 56477316 56477358 L1PA7 6471 + 6055 6097 208018 42 chain 13938 chr19 59128983 + 56483815 56484155 L1PB1 5432 - 8 318 144795 12 1 0 10 1 0 9 2 1 22 1 0 9 0 2 5 12 8 14 1 0 5 3 1 17 8 0 9 2 0 4 1 0 15 5 4 40 1 0 16 2 1 8 0 1 43 18 12 12 3 2 4 1 0 24 chain 47242 chr19 59128983 + 56485505 56486363 LTR19B 566 - 0 566 61008 324 0 1 5 293 0 236 chain 7679 chr19 59128983 + 56494439 56494546 LTR43 600 - 14 128 173052 23 1 4 56 0 4 27 chain 24926 chr19 59128983 + 56504221 56504514 AluSp 311 - 18 311 105184 293 chain 28079 chr19 59128983 + 56506402 56506729 L1PA6 6164 + 5832 6161 92715 319 0 2 8 chain 73431 chr19 59128983 + 56507722 56508570 L1PA5 6144 - 3 866 46823 133 0 2 5 0 13 160 0 1 540 1 0 9 chain 40442 chr19 59128983 + 56513833 56514289 L1PA4 6152 - 1 457 68673 456 chain 21114 chr19 59128983 + 56514289 56514518 L1PA4 6152 + 5458 5687 123514 229 chain 29404 chr19 59128983 + 56517456 56517803 L1PA5 6144 + 5799 6143 87044 333 4 1 10 chain 76935 chr19 59128983 + 56555242 56556641 L1PB1 5432 - 913 2029 45004 10 1 2 152 332 32 246 3 9 76 1 0 33 0 5 47 1 0 15 0 1 152 23 16 69 0 3 30 8 12 96 7 13 97 chain 19858 chr19 59128983 + 56556790 56557049 L1PA4 6152 - 9 277 127627 77 1 4 55 4 11 79 1 0 42 chain 34797 chr19 59128983 + 56557387 56557905 L1PBa 3878 - 257 767 76484 184 1 4 69 0 8 41 7 11 75 48 25 93 chain 2745 chr19 59128983 + 56578462 56578521 MER45A 178 - 24 86 229553 7 1 0 15 8 9 10 0 3 18 chain 6236 chr19 59128983 + 56585914 56585990 Tigger3b 1229 - 943 1019 183276 76 chain 14398 chr19 59128983 + 56589846 56590033 MER107 203 + 0 203 143213 156 1 17 30 chain 9215 chr19 59128983 + 56606062 56606197 MER1B 344 - 7 140 164480 56 17 15 62 chain 23520 chr19 59128983 + 56620993 56621267 AluY 311 + 13 297 113016 51 0 8 59 0 2 164 chain 14268 chr19 59128983 + 56635914 56636186 L1MB3 1562 + 1234 1477 143656 105 15 14 63 51 24 28 1 0 9 chain 21784 chr19 59128983 + 56649217 56649505 AluSq2 311 + 9 295 121086 125 1 0 127 12 11 23 chain 25392 chr19 59128983 + 56660862 56661220 L1PA8 5853 - 0 364 102730 46 0 10 36 2 1 19 2 1 39 0 2 11 1 0 9 1 0 66 2 0 49 2 1 5 0 1 68 chain 26417 chr19 59128983 + 56729743 56730038 AluY 311 + 15 311 98347 117 0 1 178 chain 36774 chr19 59128983 + 56745812 56746288 LTR2B 499 + 9 499 73842 5 1 0 55 4 0 42 0 19 176 0 1 10 1 0 182 chain 14490 chr19 59128983 + 56746288 56746463 MER51E 476 + 14 189 142917 175 chain 22724 chr19 59128983 + 56824570 56824911 THE1B 368 - 0 368 116963 66 0 2 57 35 45 29 4 1 100 6 24 44 chain 6173 chr19 59128983 + 56825321 56825474 MER20 218 + 29 171 183785 47 70 59 36 chain 7024 chr19 59128983 + 56831671 56831751 AluSp 311 + 58 138 177294 80 chain 48047 chr19 59128983 + 56836092 56836676 LTR66 600 + 0 598 60447 408 2 0 48 0 16 126 chain 4849 chr19 59128983 + 56836720 56836776 THE1B 368 - 311 368 196795 11 0 1 45 chain 24971 chr19 59128983 + 56840088 56840378 AluYc 301 + 0 286 104949 114 4 0 172 chain 204066 chr19 59128983 + 56846791 56849098 L1P1 4361 - 2056 4360 18920 530 0 1 876 0 1 736 18 13 147 chain 23345 chr19 59128983 + 56852279 56852849 L1P2 5180 + 842 1711 113953 39 255 553 67 9 10 200 chain 5847 chr19 59128983 + 56852406 56852479 L1PA10 4194 - 3595 3668 186714 73 chain 9726 chr19 59128983 + 56852898 56853081 MER4-int 2692 - 2463 2682 161959 81 4 5 15 0 1 7 4 2 17 6 44 17 9 7 23 chain 30305 chr19 59128983 + 56855990 56856308 AluYb8 318 + 0 318 83891 318 chain 4015 chr19 59128983 + 56864331 56864375 MER20 218 - 59 103 207144 44 chain 195559 chr19 59128983 + 56869015 56871913 L1PA10 4194 + 1466 4055 19536 71 1 0 399 314 0 172 0 1 7 1 0 110 0 4 380 1 2 4 1 0 41 4 0 53 1 3 310 0 1 84 0 1 16 2 0 154 6 7 146 5 9 437 1 0 177 chain 20889 chr19 59128983 + 56877566 56877816 AluY 311 + 36 307 124322 36 0 1 59 0 1 60 0 19 95 chain 48820 chr19 59128983 + 56882604 56883250 PABL_A 660 + 0 660 59860 20 12 11 37 0 5 11 9 20 5 2 0 237 4 3 91 0 2 218 chain 10071 chr19 59128983 + 56889593 56889713 L1PA5 6144 + 6024 6144 160215 25 0 1 60 1 0 34 chain 80376 chr19 59128983 + 56907026 56908015 LTR13 1007 - 0 1007 43443 80 0 2 112 0 1 128 0 2 32 0 2 136 11 20 106 5 6 213 0 1 166 chain 8511 chr19 59128983 + 56951326 56951496 MLT1A 405 - 237 405 168236 83 53 52 7 1 0 26 chain 7105 chr19 59128983 + 56955891 56955974 MSTA 426 - 315 399 176716 64 0 1 19 chain 6564 chr19 59128983 + 56955974 56956057 MSTA 426 - 315 399 180749 36 0 1 47 chain 6891 chr19 59128983 + 56956057 56956140 MSTA 426 - 315 399 178266 36 0 1 47 chain 6891 chr19 59128983 + 56956140 56956223 MSTA 426 - 315 399 178265 36 0 1 47 chain 6769 chr19 59128983 + 56956223 56956306 MSTA 426 - 315 399 179179 36 0 1 47 chain 6891 chr19 59128983 + 56956306 56956389 MSTA 426 - 315 399 178264 36 0 1 47 chain 6891 chr19 59128983 + 56956389 56956472 MSTA 426 - 315 399 178263 36 0 1 47 chain 6891 chr19 59128983 + 56956555 56956638 MSTA 426 - 315 399 178262 36 0 1 47 chain 7472 chr19 59128983 + 56956638 56956722 MSTA 426 - 315 399 174330 84 chain 7341 chr19 59128983 + 56956722 56956806 MSTA 426 - 315 399 175146 84 chain 6891 chr19 59128983 + 56956806 56956889 MSTA 426 - 315 399 178261 36 0 1 47 chain 7472 chr19 59128983 + 56956889 56956973 MSTA 426 - 315 399 174329 84 chain 7472 chr19 59128983 + 56956973 56957057 MSTA 426 - 315 399 174328 84 chain 7341 chr19 59128983 + 56957057 56957141 MSTA 426 - 315 399 175145 84 chain 7341 chr19 59128983 + 56957141 56957225 MSTA 426 - 315 399 175144 84 chain 6891 chr19 59128983 + 56957225 56957308 MSTA 426 - 315 399 178260 36 0 1 47 chain 9015 chr19 59128983 + 56957308 56957417 MSTA 426 - 315 426 165517 36 0 1 47 0 1 26 chain 2842 chr19 59128983 + 56981430 56981462 MIRb 242 + 67 99 227975 32 chain 60365 chr19 59128983 + 57010726 57011482 MER4E 760 + 0 760 52649 164 1 0 217 0 4 229 7 6 130 0 2 8 chain 5424 chr19 59128983 + 57017039 57017106 MLT1B 390 + 22 89 190763 67 chain 5278 chr19 59128983 + 57017283 57017345 Tigger3c 601 + 475 537 192234 62 chain 131004 chr19 59128983 + 57037437 57039055 L1P3 4156 + 0 1661 27861 251 1 0 63 8 6 88 5 6 80 7 20 264 0 1 4 3 25 42 1 0 382 0 8 23 0 2 396 chain 228378 chr19 59128983 + 57042551 57045921 L1PBa1 4058 - 907 4000 17396 176 313 0 202 0 2 106 0 6 15 1 0 190 2 0 12 4 3 103 14 0 8 0 14 199 8 7 72 0 1 231 0 2 24 1 2 24 0 4 60 0 2 154 0 10 64 1 2 121 17 13 24 1 0 190 10 9 429 8 9 29 13 12 64 1 2 189 1 2 23 2 1 109 13 10 64 0 20 78 chain 26422 chr19 59128983 + 57068281 57068585 AluSg7 307 - 2 307 98329 173 0 1 131 chain 73013 chr19 59128983 + 57070700 57071654 LTR5_Hs 974 - 0 974 47020 191 7 7 61 0 2 34 3 5 17 31 31 146 0 5 12 0 4 363 0 3 76 0 4 13 chain 4235 chr19 59128983 + 57094311 57094381 MER94 134 - 7 61 204099 47 16 0 7 chain 5314 chr19 59128983 + 57098068 57098133 THE1A-int 1579 - 1514 1579 191888 65 chain 29790 chr19 59128983 + 57111553 57111864 AluYb8 318 - 7 318 85506 311 chain 29095 chr19 59128983 + 57123343 57123944 L1PB3 3668 + 3115 3614 88573 22 1 6 54 0 2 92 1 0 100 1 0 69 9 0 3 14 0 15 76 4 18 5 3 25 11 9 29 23 18 11 7 4 15 chain 5980 chr19 59128983 + 57126638 57126714 L1ME1 1623 - 340 415 185423 15 1 0 60 chain 3416 chr19 59128983 + 57126993 57127030 tRNA-Arg-AGA 37 - 0 37 216844 37 chain 5353 chr19 59128983 + 57142082 57142247 L1PB1 5432 + 5274 5424 191501 6 1 0 16 1 0 4 56 47 23 1 0 22 1 0 12 2 1 15 1 0 4 chain 7314 chr19 59128983 + 57151294 57151398 MER68 562 - 45 147 175343 11 5 3 88 chain 4526 chr19 59128983 + 57181589 57181683 MER21C 908 - 813 906 200490 42 29 28 23 chain 2669 chr19 59128983 + 57198919 57199037 MLT1B 390 - 38 151 230788 16 48 42 16 18 19 20 chain 4462 chr19 59128983 + 57207645 57207802 Tigger3a 397 - 60 237 201217 40 74 104 25 10 0 8 chain 29615 chr19 59128983 + 57214375 57214704 L1P1 4361 - 33 360 86160 23 1 0 157 1 0 147 chain 11909 chr19 59128983 + 57219837 57219989 L1PA16 3655 - 131 283 152563 152 chain 21616 chr19 59128983 + 57220201 57220469 AluSp 311 - 31 301 121705 84 5 8 56 1 0 122 chain 3021 chr19 59128983 + 57221223 57221261 MER74A 558 + 465 506 224597 33 0 3 5 chain 4344 chr19 59128983 + 57226108 57226155 L1PA5 6144 - 276 323 202671 47 chain 86108 chr19 59128983 + 57229893 57230901 LTR13 1007 - 0 1006 41117 38 2 0 6 0 2 148 0 1 414 0 1 6 1 0 5 0 1 36 4 0 348 chain 36177 chr19 59128983 + 57246493 57246895 L1PA4 6152 - 0 403 74667 388 0 1 14 chain 55588 chr19 59128983 + 57255025 57255679 L1PA8A 6298 - 8 649 55367 527 13 0 114 chain 24069 chr19 59128983 + 57257180 57257470 L1PA8A 6298 + 5364 5651 109933 49 1 0 76 3 1 161 chain 27888 chr19 59128983 + 57279796 57280118 AluYb8 318 - 13 318 93403 8 15 0 171 2 0 126 chain 4261 chr19 59128983 + 57284943 57284994 L1MB2 1706 + 1643 1694 203730 51 chain 111590 chr19 59128983 + 57298898 57300475 L1P2 5180 - 1462 3986 33781 32 0 2 50 0 13 97 13 2 210 0 9 15 22 1 98 2 0 18 4 1 273 2 5 74 0 957 25 0 1 146 6 4 136 4 5 39 2 1 105 63 64 141 chain 5891 chr19 59128983 + 57308703 57308777 MER41D 557 - 225 299 186273 74 chain 6117 chr19 59128983 + 57309484 57309580 LOR1-int 1871 + 99 192 184301 4 1 0 58 6 5 4 1 0 22 chain 44815 chr19 59128983 + 57309707 57310318 L1PA11 4918 + 3898 4497 63275 90 1 0 4 0 1 214 0 1 123 3 0 54 29 23 67 2 0 13 1 0 4 1 0 5 chain 6674 chr19 59128983 + 57311038 57311303 L1ME2z 1083 + 649 867 179873 33 20 8 47 1 0 9 128 94 27 chain 124857 chr19 59128983 + 57363526 57365964 THE1B-int 1605 + 15 1605 29438 15 3 6 37 1 0 110 1 0 247 1 26 14 874 0 717 1 0 170 0 1 247 chain 78774 chr19 59128983 + 57363958 57364829 L1P1 4361 - 304 1175 44160 109 1 0 15 0 1 746 chain 2451 chr19 59128983 + 57377221 57377266 MER53 195 - 43 86 233688 12 5 3 28 chain 53649 chr19 59128983 + 57382451 57383464 MER4E1 777 + 0 769 56586 19 1 2 171 0 1 229 313 2 114 10 75 156 chain 55951 chr19 59128983 + 57412470 57413187 L1PB1 5432 - 382 1093 55151 429 11 4 119 15 16 143 chain 18594 chr19 59128983 + 57413187 57413573 L1PB1 5432 + 5073 5424 131245 30 3 0 11 3 0 24 1 0 9 17 12 8 2 0 53 2 1 16 1 0 20 0 2 22 1 0 15 3 0 17 31 19 14 3 1 23 1 0 10 0 1 10 1 0 10 1 0 19 1 0 4 chain 15482 chr19 59128983 + 57416276 57416494 L1PA8 5853 - 0 215 139953 83 0 1 8 2 1 19 2 1 47 1 0 14 1 0 41 chain 7847 chr19 59128983 + 57418956 57419051 MER82 654 - 378 473 172030 95 chain 25786 chr19 59128983 + 57424530 57424888 L1PA8 5853 + 5311 5853 100930 11 0 186 56 1 0 45 3 1 11 0 2 56 1 0 13 0 1 47 2 1 16 5 4 8 0 1 83 chain 4955 chr19 59128983 + 57454473 57454551 MER33 330 + 105 184 195648 34 11 12 33 chain 15209 chr19 59128983 + 57458518 57458831 MSTA 426 - 37 395 140750 65 20 40 17 43 42 9 0 4 5 1 0 55 25 48 73 chain 9807 chr19 59128983 + 57493647 57493809 Tigger4a 237 + 5 153 161564 49 1 0 12 24 11 76 chain 23239 chr19 59128983 + 57501305 57501707 L1PA16 3655 + 3193 3590 114498 8 1 0 34 76 74 123 1 0 49 0 2 95 3 0 12 chain 22494 chr19 59128983 + 57501967 57502259 AluY 311 + 0 288 118050 63 2 0 62 1 2 15 4 1 145 chain 2875 chr19 59128983 + 57508685 57508719 L1MA7 2200 + 2006 2040 227428 34 chain 26485 chr19 59128983 + 57515475 57515783 AluSp 311 + 1 306 98095 106 1 0 18 1 0 3 1 0 178 chain 79798 chr19 59128983 + 57516323 57517226 L1PA4 6152 - 0 910 43685 113 0 1 35 4 8 692 0 2 59 chain 3381 chr19 59128983 + 57525968 57526009 MSTA 426 + 385 426 217446 41 chain 20602 chr19 59128983 + 57534697 57534943 L1PA8A 6298 - 12 258 125290 246 chain 12071 chr19 59128983 + 57534960 57535114 MER50 708 + 548 708 151897 8 0 6 146 chain 4889 chr19 59128983 + 57536458 57536512 L1MC1 2226 - 179 233 196380 54 chain 20032 chr19 59128983 + 57548299 57548559 MLT2A1 477 + 172 477 127038 31 3 4 178 2 46 46 chain 7051 chr19 59128983 + 57553938 57554078 Tigger3a 397 + 38 237 177105 34 22 71 14 8 18 62 chain 11766 chr19 59128983 + 57559650 57559831 L1PB2 3958 + 3626 3803 153192 42 16 15 70 3 1 21 1 0 28 chain 9873 chr19 59128983 + 57561542 57561720 L1PA8 5853 + 5638 5848 161215 32 30 28 42 2 1 19 1 0 42 0 36 10 chain 18937 chr19 59128983 + 57562743 57563109 THE1D 372 + 0 370 130268 66 35 36 38 0 1 25 78 80 124 chain 2773 chr19 59128983 + 57564547 57564584 MER96B 391 + 344 379 229175 19 2 0 16 chain 3404 chr19 59128983 + 57579029 57579071 MIR 256 + 67 109 217003 42 chain 24940 chr19 59128983 + 57624951 57625257 AluSp 311 + 11 310 105107 183 9 2 114 chain 133527 chr19 59128983 + 57636528 57638523 L1PA10 4194 - 1887 3962 27315 165 12 120 187 0 1 218 1 0 109 1 3 209 1 6 52 17 19 62 1 0 633 0 3 5 45 43 65 4 0 12 10 0 8 24 24 7 1 0 21 2 0 9 51 36 4 1 0 13 4 2 19 6 5 6 1 0 9 chain 51669 chr19 59128983 + 57659528 57660084 L1PA2 6032 - 799 1355 57781 556 chain 74110 chr19 59128983 + 57660084 57660882 L1PA2 6032 + 5231 6029 46454 798 chain 20495 chr19 59128983 + 57660947 57661192 AluY 311 + 48 294 125644 84 0 1 161 chain 5747 chr19 59128983 + 57665263 57665328 MER41B 635 - 88 153 187670 65 chain 24013 chr19 59128983 + 57668039 57668322 AluSp 311 - 19 300 110255 160 2 0 121 chain 31395 chr19 59128983 + 57698318 57698766 LTR22A 463 - 1 463 81825 90 1 15 116 45 46 145 6 5 45 chain 396234 chr19 59128983 + 57706457 57711314 HERVL-int 5654 - 2 4967 10230 71 0 3 33 22 23 82 0 7 45 0 1 36 1 5 121 1 0 327 0 3 79 0 1 180 0 1 7 1 4 168 3 0 5 0 3 499 0 4 193 0 1 244 0 4 158 0 27 219 4 0 341 0 1 568 1 5 138 0 10 230 0 1 63 1 5 13 0 2 273 0 1 7 1 0 15 21 35 439 4 13 63 0 5 39 3 6 138 chain 26784 chr19 59128983 + 57711386 57711705 HERVL-int 5654 + 336 659 97033 83 0 2 52 2 4 182 chain 22727 chr19 59128983 + 57733443 57733736 AluSz 310 + 10 304 116945 30 1 0 84 2 4 176 chain 25850 chr19 59128983 + 57761604 57761899 AluSp 311 - 16 311 100654 295 chain 4822 chr19 59128983 + 57775470 57775526 MER74A 558 + 480 537 197109 17 0 1 39 chain 23332 chr19 59128983 + 57785407 57785697 AluSc 308 + 9 297 114012 12 1 0 236 2 1 39 chain 36603 chr19 59128983 + 57786709 57787193 MER41-int 2638 - 241 728 74095 166 3 5 79 0 5 25 4 5 137 6 1 64 chain 43823 chr19 59128983 + 57789658 57790207 MER41A 554 - 0 552 64421 81 6 7 38 0 1 233 0 1 191 chain 10962 chr19 59128983 + 57821340 57821552 THE1C 375 + 155 363 156355 23 1 0 5 62 59 121 chain 28218 chr19 59128983 + 57840882 57841179 AluYa5 310 - 13 310 92240 297 chain 49945 chr19 59128983 + 57887714 57888367 PABL_B 668 - 8 668 59059 63 3 0 5 5 6 151 12 18 332 1 4 81 chain 3908 chr19 59128983 + 57904078 57904129 L1PB4 2604 - 1234 1285 208734 51 chain 40029 chr19 59128983 + 57935421 57936332 HSMAR2 1300 - 62 876 69282 126 1 3 53 0 3 44 34 38 29 4 10 9 0 1 15 6 7 43 300 182 18 1 5 228 chain 37631 chr19 59128983 + 57949467 57949954 LTR3B_ 500 + 6 500 72647 72 1 0 180 6 7 38 0 1 38 9 11 4 0 1 92 0 3 47 chain 6562 chr19 59128983 + 57963621 57963871 MSTD 398 + 58 320 180763 57 125 148 18 23 12 27 chain 24531 chr19 59128983 + 57969596 57969887 AluSp 311 + 10 300 107370 122 1 0 168 chain 114631 chr19 59128983 + 57993913 57995221 SVA_D 2077 + 6 1699 32911 4 1 0 6 1 0 10 4 2 9 1 0 681 0 80 80 0 310 200 0 1 4 10 9 297 chain 22761 chr19 59128983 + 58013322 58013597 AluSp 311 - 24 299 116776 275 chain 2763 chr19 59128983 + 58041308 58041348 MER44D 709 - 591 639 229295 9 0 2 25 0 6 6 chain 3593 chr19 59128983 + 58059693 58059786 L1MA1 4479 + 4107 4189 213768 35 40 29 18 chain 2334 chr19 59128983 + 58071987 58072020 MER41G 495 - 232 264 234941 4 1 0 28 chain 15526 chr19 59128983 + 58114059 58114263 THE1B 368 - 0 211 139810 49 5 13 134 1 0 15 chain 5874 chr19 59128983 + 58144082 58144193 Tigger2 2703 - 229 361 186438 63 29 50 19 chain 24831 chr19 59128983 + 58203764 58204049 AluYc 301 + 1 288 105719 119 0 2 166 chain 24771 chr19 59128983 + 58216851 58217141 AluSg 306 + 10 300 106054 290 chain 6451 chr19 59128983 + 58222307 58222383 LTR10F 562 - 8 84 181631 76 chain 3183 chr19 59128983 + 58235687 58235720 MER30 238 + 205 238 221236 33 chain 386872 chr19 59128983 + 58240487 58244801 L1PA4 6152 + 1831 6152 10553 855 2 1 280 0 1 96 0 1 399 0 6 509 2 1 895 0 1 423 0 3 845 3 0 5 chain 79092 chr19 59128983 + 58249584 58250572 LTR13 1007 + 0 1007 44006 73 2 0 273 0 20 15 4 5 54 1 0 9 1 0 179 2 1 54 25 28 296 chain 27217 chr19 59128983 + 58279321 58279675 MER41B 635 - 253 617 95538 97 0 6 152 1 2 38 0 3 66 chain 42099 chr19 59128983 + 58310553 58311093 LTR10C 591 - 36 591 66498 15 12 17 13 0 2 99 0 6 73 0 2 328 chain 46196 chr19 59128983 + 58315909 58316799 LTR10C 591 - 0 589 61852 57 6 11 13 0 2 23 1 0 27 0 2 114 313 0 294 0 4 42 chain 68142 chr19 59128983 + 58321697 58322936 LTR5_Hs 974 + 2 974 49184 146 1 2 141 0 22 85 0 8 28 0 3 22 0 4 72 1 0 227 6 21 20 1 0 4 0 1 5 32 21 30 308 0 47 1 0 58 0 1 4 chain 30892 chr19 59128983 + 58326670 58327091 LTR2 463 + 0 463 82694 57 1 4 53 0 1 12 0 3 255 23 58 20 chain 31271 chr19 59128983 + 58327832 58328226 LTR12_ 688 - 0 502 82040 156 0 103 169 10 15 59 chain 26634 chr19 59128983 + 58338844 58339167 LTR2 463 + 138 463 97534 29 0 2 294 chain 49262 chr19 59128983 + 58342110 58342686 LTR6B 557 - 3 557 59543 51 20 0 108 1 0 37 1 0 358 chain 47370 chr19 59128983 + 58361959 58362530 LTR14C 587 - 0 576 60919 338 0 5 233 chain 8180 chr19 59128983 + 58378630 58378720 5S 121 + 0 90 170063 90 chain 24809 chr19 59128983 + 58394444 58394741 AluYf5 307 + 0 296 105843 213 1 0 83 chain 3900 chr19 59128983 + 58397848 58397894 LTR62 707 + 0 46 208844 46 chain 28199 chr19 59128983 + 58402269 58402609 MER41A 554 + 18 368 92315 46 0 10 294 chain 11919 chr19 59128983 + 58407361 58407507 LTR10D 510 - 0 146 152521 146 chain 109923 chr19 59128983 + 58407560 58409108 HERVK14-int 1672 + 115 1659 34234 136 5 9 27 28 33 19 2 0 229 8 7 40 1 0 204 1 0 166 1 0 72 18 14 33 4 3 139 7 8 54 1 0 38 0 1 65 6 5 60 1 0 31 1 0 11 1 0 77 0 1 62 chain 44080 chr19 59128983 + 58430134 58431037 LTR10C 591 + 0 591 64126 44 0 1 90 1 0 89 0 2 19 0 4 52 0 4 9 1 0 21 1 0 41 10 11 42 4 0 79 0 2 35 319 0 46 chain 25540 chr19 59128983 + 58430693 58430988 AluSp 311 - 16 311 102053 295 chain 3356 chr19 59128983 + 58472363 58472398 tRNA-Gly-GGA 38 + 0 35 217956 35 chain 20372 chr19 59128983 + 58476843 58477153 AluSp 311 + 10 305 125985 28 0 2 118 3 0 69 13 12 41 10 1 8 4 0 16 chain 15833 chr19 59128983 + 58524914 58525212 LTR5B 1012 - 0 301 138845 7 0 2 41 5 4 89 14 16 25 0 9 10 46 37 61 chain 18051 chr19 59128983 + 58527988 58528193 MER9a3 513 - 0 205 132733 205 chain 3957 chr19 59128983 + 58538752 58538816 LTR62 707 + 641 707 208020 19 7 9 38 chain 25239 chr19 59128983 + 58553337 58553626 LTR10C 591 - 290 578 103543 162 2 1 125 chain 19359 chr19 59128983 + 58605540 58605795 AluY 311 + 58 300 129048 75 24 11 156 chain 24333 chr19 59128983 + 58616766 58617048 AluY 311 + 20 303 108459 112 0 1 170 chain 8503 chr19 59128983 + 58617368 58617483 Tigger1 2417 + 1473 1585 168275 31 3 0 81 chain 29116 chr19 59128983 + 58617787 58618099 AluYa5 310 + 0 310 88479 132 2 0 178 chain 22170 chr19 59128983 + 58624697 58625007 PRIMA4_LTR 623 - 261 604 119497 32 0 6 56 6 8 57 5 25 81 1 6 72 chain 158577 chr19 59128983 + 58657884 58659776 SVA_D 2077 + 3 2077 23523 19 2 0 520 0 40 314 22 165 31 1 2 163 0 78 53 72 0 13 4 0 44 1 0 10 2 1 220 0 3 244 2 0 136 1 0 18 chain 5314 chr19 59128983 + 58659009 58659081 SVA_D 2077 + 1085 1159 62702 7 1 2 63 0 1 1 chain 38567 chr19 59128983 + 58660264 58660804 MER41A 554 + 0 554 71344 26 2 0 154 2 5 48 3 15 242 2 0 5 9 13 34 1 0 12 chain 17189 chr19 59128983 + 58669147 58669395 LTR12C 1709 + 776 1079 135065 61 1 0 52 1 0 88 1 42 18 3 19 23 chain 14698 chr19 59128983 + 58671285 58671442 AluYb9 318 + 159 316 142274 157 chain 5286 chr19 59128983 + 58672910 58672971 HY3 101 + 24 86 192145 41 0 1 20 chain 12586 chr19 59128983 + 58674539 58674689 L1PA4 6152 + 6001 6152 149899 138 1 0 4 0 2 7 chain 7638 chr19 59128983 + 58679560 58679644 LTR12C 1709 - 332 416 173306 84 chain 7684 chr19 59128983 + 58712164 58712282 MSTB 430 - 31 152 173017 69 9 12 40 chain 42092 chr19 59128983 + 58728889 58729427 MER41A 554 + 10 554 66506 259 0 1 160 0 1 37 0 5 66 1 0 15 chain 22255 chr19 59128983 + 58747615 58747883 AluSp 311 + 32 297 119102 109 0 1 34 0 1 59 5 0 61 chain 12852 chr19 59128983 + 58765150 58765325 LOR1-int 1871 - 1299 1482 148836 87 0 9 82 1 0 5 chain 21928 chr19 59128983 + 58765333 58765600 AluY 311 + 8 293 120507 26 0 17 81 0 1 160 chain 50736 chr19 59128983 + 58767669 58768310 LTR6A 649 - 0 646 58476 20 5 6 188 1 0 30 1 8 63 6 4 327 chain 4602 chr19 59128983 + 58786049 58786207 Charlie1b 519 - 218 377 199599 13 8 11 52 69 67 16 chain 2770 chr19 59128983 + 58813430 58813464 Tigger4a 237 - 22 55 229200 29 1 0 4 chain 5352 chr19 59128983 + 58814316 58814378 Tigger4a 237 - 0 62 191523 62 chain 87693 chr19 59128983 + 58821622 58822614 LTR13 1007 - 0 1007 40493 93 0 5 479 9 1 68 0 18 343 chain 4745 chr19 59128983 + 58835594 58835650 MLT1B 390 + 334 390 197970 56 chain 14392 chr19 59128983 + 58835752 58835964 MER30 238 + 0 238 143226 108 29 52 37 0 3 38 chain 29786 chr19 59128983 + 58837493 58837864 MER51B 395 - 0 380 85527 67 0 8 75 1 0 175 0 2 53 chain 6033 chr19 59128983 + 58874864 58874939 5S 121 + 40 119 184944 42 0 4 33 chain 23045 chr19 59128983 + 58874955 58875240 AluSg 306 + 2 289 115421 133 6 10 99 2 0 45 chain 13295 chr19 59128983 + 58876371 58876531 AluSc 308 + 2 163 147104 35 0 1 125 chain 24198 chr19 59128983 + 58893940 58894239 AluSg7 307 - 5 307 109230 27 0 2 36 1 0 110 0 1 100 0 1 25 chain 168772 chr19 59128983 + 58915599 58917710 SVA_D 2077 - 0 2022 22188 8 2 0 628 0 94 102 49 0 207 0 2 85 1 0 4 44 5 30 2 0 4 2 0 18 89 0 127 8 5 30 0 3 516 1 0 154 chain 3198 chr19 59128983 + 58916339 58916388 SVA_D 2077 - 607 705 74253 33 0 49 16 chain 2872 chr19 59128983 + 58916685 58916729 SVA_D 2077 - 904 948 74253 44 chain 2350 chr19 59128983 + 58916790 58916826 SVA_D 2077 - 960 996 74253 36 chain 2548 chr19 59128983 + 58916826 58916874 SVA_D 2077 - 1179 1307 194703 16 17 97 15 chain 29275 chr19 59128983 + 58923564 58923875 AluYb8 318 - 7 318 87670 311 chain 66439 chr19 59128983 + 58953438 58954760 LTR12D 1347 - 0 945 49900 14 11 1 54 324 0 196 1 0 30 5 4 26 19 15 164 0 2 40 0 3 92 20 13 125 67 32 134 chain 28858 chr19 59128983 + 58953525 58953840 AluYb8 318 - 9 318 89633 177 6 0 132 chain 3144 chr19 59128983 + 58954560 58954626 LTR12D 1347 - 811 852 199401 28 31 6 7 chain 115086 chr19 59128983 + 58959458 58961312 THE1B-int 1605 + 0 1594 32761 11 0 6 218 0 3 93 337 22 79 10 35 75 0 10 143 1 12 218 11 8 167 7 6 417 0 2 51 0 2 16 chain 20699 chr19 59128983 + 58970889 58971286 MSTB 430 + 3 430 124968 96 38 42 13 1 14 34 5 11 77 56 63 77 chain 3972 chr19 59128983 + 58971336 58971383 MSTB 430 - 383 430 207800 47 chain 29446 chr19 59128983 + 58976460 58976770 AluYb9 318 - 8 318 86869 310 chain 13222 chr19 59128983 + 58980304 58980499 MER30 238 + 1 230 147386 17 1 19 56 0 3 5 10 23 106 chain 25086 chr19 59128983 + 59003889 59004207 AluY 311 + 0 309 104370 47 8 6 70 1 0 3 6 0 183 chain 22471 chr19 59128983 + 59005474 59005765 AluSg4 309 + 11 301 118154 244 8 7 39 chain 24748 chr19 59128983 + 59014307 59014592 AluY 311 + 16 303 106183 92 0 1 17 0 1 176 chain 72976 chr19 59128983 + 59018657 59019638 MER11A 1151 + 0 1120 47036 55 0 99 135 8 5 31 0 2 61 0 1 44 10 11 92 1 2 146 0 1 116 0 3 31 24 55 30 0 1 50 0 1 13 1 2 133 chain 29267 chr19 59128983 + 59037889 59038197 AluYa5 310 - 2 310 87704 308 chain 74899 chr19 59128983 + 59095603 59096539 LTR13A 966 + 0 966 46062 76 0 4 15 0 6 111 5 19 116 5 6 267 0 4 75 0 1 266 chain 4921 chr19 59128983 + 59108584 59108755 MER31-int 1156 - 867 941 196046 63 97 0 11 chain 3712 chr19 59128983 + 59114201 59114244 MER72 723 - 0 43 211758 43 chain 42962 chr22 51304566 + 16065492 16065986 LTR15 485 - 0 484 65458 4 1 0 138 8 0 275 1 0 67 chain 6472 chr22 51304566 + 16079551 16079630 L1PA8 5853 + 5771 5850 181455 79 chain 25989 chr22 51304566 + 16081639 16082062 MER61F 604 - 70 540 100060 123 42 66 33 3 4 183 22 44 17 chain 86640 chr22 51304566 + 16125167 16126178 LTR5B 1012 - 0 1012 40908 33 11 12 660 3 1 206 0 2 98 chain 13727 chr22 51304566 + 16142243 16142445 Tigger4a 237 + 16 234 145519 9 0 15 17 1 2 117 7 0 12 0 7 39 chain 11731 chr22 51304566 + 16162282 16162449 PABL_B 668 - 207 382 153344 21 0 3 48 9 15 25 2 1 62 chain 9813 chr22 51304566 + 16169224 16169345 MSTA-int 1630 - 1509 1630 161532 121 chain 103029 chr22 51304566 + 16174571 16175773 L1PA5 6144 - 16 1223 35981 151 6 7 157 3 4 534 6 10 176 1 0 168 chain 20870 chr22 51304566 + 16185396 16185659 L1PA8A 6298 + 5877 6140 124391 263 chain 85828 chr22 51304566 + 16193684 16194667 L1P1 4361 - 868 1851 41222 322 1 0 511 1 2 148 chain 4108 chr22 51304566 + 16207970 16208018 MER3 215 + 64 112 205793 48 chain 8477 chr22 51304566 + 16220291 16220775 L1MB8 1703 + 1188 1625 168417 79 241 257 39 106 43 19 chain 3729 chr22 51304566 + 16221959 16221998 HY3 101 - 1 40 211478 39 chain 28290 chr22 51304566 + 16224525 16225121 L1MA1 4479 + 3565 4151 91980 16 13 4 129 10 5 20 2 0 16 1 0 9 2 0 5 10 29 28 95 91 30 1 0 5 3 0 59 0 1 62 5 4 28 3 1 10 0 1 20 1 0 13 chain 82507 chr22 51304566 + 16249668 16250755 L1PA7 6471 + 5369 6469 42535 249 1 3 48 0 1 261 0 1 156 8 14 114 0 9 83 3 5 90 5 0 56 3 0 10 chain 21032 chr22 51304566 + 16289033 16289271 L1PA4 6152 + 5907 6151 123801 31 0 3 50 0 3 157 chain 20008 chr22 51304566 + 16313881 16314314 MER4A1 472 - 23 472 127120 42 9 11 16 8 10 82 96 97 36 0 2 87 1 0 4 13 21 11 2 1 4 0 1 7 0 2 15 chain 24878 chr22 51304566 + 16332413 16332725 AluSp 311 + 6 305 105465 288 13 0 11 chain 252364 chr22 51304566 + 16356569 16359396 L1PA4 6152 - 0 2830 16108 256 1 0 594 1 0 79 0 1 870 0 4 1026 chain 14106 chr22 51304566 + 16361565 16361718 L1PA4 6152 - 3 156 144192 153 chain 56397 chr22 51304566 + 16400908 16401612 L1PA6 6164 + 5457 6162 54906 546 15 16 143 chain 31973 chr22 51304566 + 16403703 16404064 L1PA6 6164 - 683 1044 80900 361 chain 49531 chr22 51304566 + 16404072 16406500 L1PA6 6164 + 5535 6160 59366 104 0 2 149 1805 0 177 0 2 34 10 11 136 3 0 10 chain 40243 chr22 51304566 + 16410296 16410813 L1PA7 6471 - 125 656 68953 28 0 8 186 0 1 32 0 2 77 0 2 37 0 1 157 chain 9495 chr22 51304566 + 16410813 16410928 L1PA7 6471 + 6349 6464 163098 115 chain 58151 chr22 51304566 + 16429559 16430310 L1PA8A 6298 + 5504 6290 53902 43 1 9 113 2 0 193 0 25 30 0 1 88 2 1 103 0 3 56 21 22 99 chain 89198 chr22 51304566 + 16440477 16441525 L1P1 4361 - 20 1069 39927 12 2 1 23 1 0 24 0 2 129 1 0 217 0 1 383 0 1 256 chain 214867 chr22 51304566 + 16441525 16444044 L1P1 4361 + 756 3278 18175 307 8 9 115 3 0 5 13 16 315 0 2 1753 chain 44915 chr22 51304566 + 16444044 16444546 L1PA4 6152 - 377 879 62743 502 chain 31034 chr22 51304566 + 16444546 16444910 L1PA4 6152 + 5774 6143 82462 47 0 3 303 0 2 14 chain 362342 chr22 51304566 + 16479323 16483624 L1P1 4361 - 33 4357 11312 23 1 0 57 0 1 99 1 0 542 0 1 4 1 0 1418 0 1 236 7 6 715 0 1 91 0 6 48 0 1 404 0 15 104 1 2 549 chain 9205 chr22 51304566 + 16492827 16492934 LTR5_Hs 974 + 0 109 164536 19 0 2 88 chain 41502 chr22 51304566 + 16493155 16493651 MER9a2 513 + 0 494 67277 456 2 0 38 chain 66713 chr22 51304566 + 16501447 16502243 L1PA7 6471 + 5672 6468 49780 796 chain 13381 chr22 51304566 + 16626574 16626730 L1PA4 6152 + 5994 6150 146780 156 chain 81769 chr22 51304566 + 16666624 16667669 MER11C 1089 + 0 1063 42862 246 0 9 58 0 4 69 1 0 160 8 9 133 0 4 45 6 7 319 chain 226310 chr22 51304566 + 16672980 16675613 L1PA5 6144 - 6 2640 17518 404 3 2 211 0 2 146 0 1 226 0 1 487 1 0 444 1 0 710 chain 23569 chr22 51304566 + 16676430 16676801 L1PA8 5853 - 0 364 112747 92 10 9 11 3 2 34 12 11 14 1 0 72 3 1 39 5 4 75 chain 31021 chr22 51304566 + 16676819 16677220 L1P3 4156 + 3123 3544 82475 277 0 4 112 0 16 12 chain 158774 chr22 51304566 + 16689768 16692654 HERVIP10F-int 4088 - 1124 3849 23490 205 0 11 151 1 2 86 1 0 8 0 1 35 1 2 4 1 0 135 2 1 12 2 1 77 1 0 82 2 1 65 1 0 20 1 0 52 11 10 330 34 30 28 11 10 27 3 0 25 35 32 60 1 0 28 1 0 8 0 13 7 32 16 21 12 5 4 1 0 13 4 0 39 1 0 98 1 0 18 7 6 17 1 0 14 1 0 22 8 5 24 15 11 5 1 0 21 1 0 11 2 0 41 1 0 29 1 0 8 4 1 4 1 0 21 19 10 5 1 0 8 1 0 20 1 0 11 1 0 26 1 0 5 1 0 60 8 6 33 15 12 38 2 1 8 3 1 27 1 0 10 6 5 11 1 0 14 3 2 10 1 0 17 13 10 34 1 0 30 1 0 17 24 19 11 3 0 11 3 1 4 1 0 16 3 2 14 1 0 7 1 0 6 23 12 31 2 0 15 102 57 8 1 0 20 1 0 12 3 1 7 3 0 15 4 0 12 chain 354246 chr22 51304566 + 16693422 16697404 L1PA3long 6157 - 0 3992 11499 23 0 1 118 0 1 629 0 1 70 0 4 420 1 0 427 0 3 1167 0 1 1127 chain 488645 chr22 51304566 + 16927965 16934088 L1PA5 6144 + 0 6131 7418 136 0 13 60 3 2 39 1 3 228 1 0 31 3 0 5 5 9 7 0 2 14 9 10 21 0 3 217 0 17 19 17 0 118 24 0 62 0 1 4 1 0 144 13 4 732 1 0 174 6 7 488 0 3 546 0 4 35 1 0 126 0 1 224 1 0 161 3 0 125 0 3 184 0 1 456 0 1 416 1 10 944 0 1 171 5 0 13 0 8 128 chain 211765 chr22 51304566 + 16934262 16936763 L1PA6 6164 + 3630 6153 18376 1019 2 0 204 3 1 357 1 0 23 4 6 24 0 20 28 0 4 28 0 1 441 1 2 105 1 0 260 chain 121214 chr22 51304566 + 16960404 16961723 L1PA2 6032 + 4712 6031 30632 1319 chain 20782 chr22 51304566 + 16961737 16961965 L1PA2 6032 + 5646 5874 124669 228 chain 14037 chr22 51304566 + 16961965 16962116 L1PA2 6032 + 5881 6032 144427 151 chain 7330 chr22 51304566 + 16963789 16963876 L1PA8 5853 + 5766 5853 175226 87 chain 6331 chr22 51304566 + 16971089 16971299 MSTB2-int 240 - 7 176 182535 16 37 36 16 26 20 26 1 0 33 33 0 22 chain 299253 chr22 51304566 + 16974030 16979700 L1P2 5180 + 2 3871 13468 148 1 0 24 14 11 9 1 0 53 1 0 158 1 0 102 1 0 8 1 0 39 0 1 66 0 1 32 1 0 3 0 51 75 0 15 139 0 6 502 0 1 99 1954 89 394 1 2 24 10 17 310 0 1 1120 1 0 221 15 6 142 chain 109982 chr22 51304566 + 16976166 16977462 L1P1 4361 - 20 1314 34222 12 2 1 23 1 0 154 1 0 216 1 2 57 0 1 595 1 0 233 chain 272663 chr22 51304566 + 16995522 16998543 L1PA3long 6157 + 3047 6157 15035 309 0 1 647 0 89 1291 1 0 773 chain 7072 chr22 51304566 + 16999881 17000000 Tigger3 1187 + 706 830 176937 18 0 3 13 6 0 9 1 10 39 1 0 32 chain 65745 chr22 51304566 + 17022478 17023218 L1PA5 6144 - 5 745 50221 740 chain 3406 chr22 51304566 + 17028331 17028477 MLT1D 503 - 107 255 216981 24 49 50 8 17 0 11 5 24 5 1 0 26 chain 29108 chr22 51304566 + 17034277 17034647 L1PA7 6471 - 4 373 88511 157 4 3 209 chain 2811 chr22 51304566 + 17062943 17062973 U3 216 + 0 30 228593 30 chain 39359 chr22 51304566 + 17092197 17092637 LTR7Y 441 + 0 441 70237 38 0 2 296 1 0 105 chain 163364 chr22 51304566 + 17092637 17095386 HERVH-int 3825 + 0 2439 22896 168 29 0 321 2 0 11 23 22 10 5 0 20 64 0 18 1 0 10 1 0 24 1 151 24 1 2 148 8 2 139 13 14 145 15 0 181 44 35 20 10 0 6 328 0 100 1 0 29 4 3 35 0 3 124 61 65 170 0 4 435 chain 40233 chr22 51304566 + 17095598 17096039 LTR7Y 441 + 0 441 68976 441 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23 0 1 51 4 18 9 2 0 89 chain 3221 chr22 51304566 + 17918257 17918295 MER58A 224 - 15 53 220566 38 chain 1703 chr22 51304566 + 17925376 17925465 LTR12 884 - 11 233 119451 76 0 133 13 chain 23767 chr22 51304566 + 17925477 17925774 AluY 311 + 4 303 111666 128 0 1 48 6 7 115 chain 14275 chr22 51304566 + 17925789 17926535 LTR12 884 - 345 744 119451 56 0 6 26 3 8 10 0 1 56 2 0 20 4 33 10 9 25 14 39 0 33 420 57 44 chain 11197 chr22 51304566 + 17932841 17932966 LTR10C 591 + 466 591 155434 125 chain 53516 chr22 51304566 + 17933844 17934436 LTR10C 591 - 0 589 56670 538 3 0 51 chain 5436 chr22 51304566 + 17960785 17960857 Tigger3b 1229 + 129 200 190649 4 1 0 67 chain 22841 chr22 51304566 + 17961185 17961448 AluY 311 + 10 274 116387 122 0 1 141 chain 19619 chr22 51304566 + 17980370 17980603 AluY 311 + 58 296 128335 6 0 4 64 0 1 163 chain 43496 chr22 51304566 + 17999460 18000000 L1PA6 6164 - 8 528 64817 58 4 0 195 0 1 68 0 1 6 10 3 61 10 0 4 1 0 123 chain 20558 chr22 51304566 + 18006529 18006864 L1MA2 4263 + 3280 3639 125445 29 0 1 11 32 58 173 15 16 16 4 0 55 chain 13359 chr22 51304566 + 18019175 18019359 L1PA5 6144 + 5958 6138 146849 23 17 17 21 4 0 119 chain 128220 chr22 51304566 + 18040348 18041751 SVA_F 1814 + 0 1814 28516 479 0 40 257 0 370 30 0 1 637 chain 29449 chr22 51304566 + 18047399 18047717 AluYb8 318 - 0 318 86854 318 chain 22828 chr22 51304566 + 18048445 18049069 LTR10C 591 - 273 575 116457 162 321 0 17 2 1 122 chain 23859 chr22 51304566 + 18079736 18080024 AluSc8 310 + 10 299 111132 41 0 1 81 0 2 142 2 0 22 chain 20545 chr22 51304566 + 18097149 18097449 AluSp 311 + 10 298 125487 6 1 0 113 15 0 20 1 0 123 5 10 16 chain 12718 chr22 51304566 + 18105265 18105428 L1PA7 6471 + 6311 6467 149384 110 2 0 38 5 0 8 chain 6632 chr22 51304566 + 18124365 18125258 L1MB8 1703 - 45 230 180224 27 105 47 17 1 3 49 660 8 34 chain 16047 chr22 51304566 + 18152460 18152742 MSTC 436 + 120 436 138219 41 0 19 45 1 0 3 8 0 26 43 67 115 chain 7028 chr22 51304566 + 18159836 18159913 BC200 147 + 28 105 177268 77 chain 7406 chr22 51304566 + 18162604 18162696 LTR35B 538 - 0 92 174737 92 chain 3558 chr22 51304566 + 18167939 18167984 L1MB8 1703 - 180 225 214359 45 chain 24862 chr22 51304566 + 18193378 18193670 AluY 311 + 18 310 105559 292 chain 5081 chr22 51304566 + 18201984 18202078 L1MB7 1623 + 1048 1141 194278 27 23 22 44 chain 4814 chr22 51304566 + 18210602 18210703 MER20 218 - 58 182 197184 14 13 34 25 1 0 4 5 8 39 chain 12175 chr22 51304566 + 18248463 18248600 L1PA4 6152 + 6002 6146 151513 36 0 7 101 chain 25356 chr22 51304566 + 18251367 18251658 AluY 311 + 10 302 102914 122 0 1 8 0 1 62 1 0 98 chain 29109 chr22 51304566 + 18283908 18284218 AluYa5 310 - 1 310 88509 183 1 0 126 chain 25466 chr22 51304566 + 18288500 18288795 AluSp 311 - 18 311 102370 161 2 0 132 chain 29536 chr22 51304566 + 18339374 18339686 AluYb8 318 - 6 318 86498 312 chain 3845 chr22 51304566 + 18394841 18394889 FLAM_A 137 + 68 116 209716 48 chain 26931 chr22 51304566 + 18406597 18406970 THE1C 375 - 0 375 96509 26 1 0 82 1 0 4 0 1 67 17 16 33 0 4 142 chain 387060 chr22 51304566 + 18414863 18419348 L1PA6 6164 + 1617 6162 10546 172 0 1 422 0 2 37 15 20 62 0 1 836 1 0 27 1 0 184 0 2 264 0 19 32 4 1 867 1 31 718 1 5 511 0 1 330 chain 12782 chr22 51304566 + 18476030 18476199 L1PA8 5853 - 0 164 149127 92 2 1 16 1 0 46 3 0 9 chain 27285 chr22 51304566 + 18502572 18502878 AluYf4 310 - 5 310 95324 173 1 0 132 chain 129916 chr22 51304566 + 18523689 18525182 SVA_D 2077 - 10 2077 28102 165 1 0 457 4 0 8 0 49 72 0 306 19 0 83 143 0 40 79 0 40 100 0 39 286 0 29 116 8 0 11 5 6 19 chain 120730 chr22 51304566 + 18535214 18536687 LTR12C 1709 - 0 1709 30782 41 0 131 61 1 0 8 27 0 240 0 4 100 9 7 5 1 0 36 0 2 207 0 118 113 1 0 59 0 13 564 chain 6730 chr22 51304566 + 18564046 18564172 L1MA6 2487 - 197 357 179466 13 2 0 45 26 62 40 chain 4980 chr22 51304566 + 18589022 18589439 MLT2B4 540 - 125 211 195371 22 286 0 22 0 1 19 48 2 20 chain 37042 chr22 51304566 + 18620447 18620906 LTR2 463 + 0 463 73468 360 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18741897 L1PB 1623 - 613 974 105042 62 1 2 5 1 0 62 24 23 162 1 0 45 chain 77872 chr22 51304566 + 18758766 18759728 LTR5_Hs 974 + 0 974 44578 459 0 4 72 1 7 117 0 1 116 7 7 21 0 1 169 chain 13951 chr22 51304566 + 18777356 18777522 L1PA4 6152 + 5987 6151 144749 159 2 0 5 chain 25089 chr22 51304566 + 18856079 18856428 L1PB 1623 + 649 996 104352 46 1 0 161 24 23 117 chain 23625 chr22 51304566 + 18859880 18860153 L1PA2 6032 - 4 277 112439 11 5 0 136 0 5 121 chain 79083 chr22 51304566 + 18887548 18888465 SVA_D 2077 - 337 1744 44015 334 0 488 40 1 0 28 8 11 78 3 0 33 4 7 388 chain 87818 chr22 51304566 + 18892171 18893180 LTR13 1007 - 0 1007 40442 94 0 5 319 13 7 278 1 0 304 chain 26555 chr22 51304566 + 18925642 18926063 LTR7B 505 - 10 505 97824 25 0 1 15 14 13 76 1 0 46 0 1 7 1 89 27 44 20 60 0 10 105 chain 76058 chr22 51304566 + 18926186 18927154 LTR5_Hs 974 + 0 974 45441 289 0 1 177 0 1 188 1 0 163 8 15 19 20 18 103 chain 535074 chr22 51304566 + 18927176 18933596 HERVK-int 6823 + 19 6567 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311 52 204 6 1 0 8 0 1 2 0 37 38 0 1 30 0 2 9 0 79 38 0 1 4 0 1 36 0 1 4 6 7 45 5 8 287 chain 2789 chr22 51304566 + 19072049 19072101 SVA_D 2077 + 811 863 148980 52 chain 7325 chr22 51304566 + 19088247 19088335 Charlie1b 519 - 45 133 175271 88 chain 10892 chr22 51304566 + 19097987 19098137 L1PA8 5853 + 5704 5853 156616 4 0 1 31 2 1 19 2 1 92 chain 2934 chr22 51304566 + 19149164 19149198 MER49 923 + 885 919 226432 34 chain 41185 chr22 51304566 + 19181176 19181768 LTR12_ 688 - 15 688 67660 114 9 12 30 0 103 154 1 2 73 24 0 42 1 0 118 1 0 25 chain 9372 chr22 51304566 + 19226364 19226484 L1PA7 6471 - 1 126 163699 15 0 5 105 chain 8436 chr22 51304566 + 19235839 19235955 MER30 238 + 120 238 168646 7 4 0 25 0 6 80 chain 6761 chr22 51304566 + 19236154 19236237 L1MB8 1703 - 155 238 179237 83 chain 9662 chr22 51304566 + 19251546 19251765 AluJr4 308 + 11 230 162290 20 53 54 42 24 23 80 chain 34666 chr22 51304566 + 19257000 19257468 L1PA8 5853 + 5383 5853 76667 84 0 6 91 1 0 44 2 0 32 0 1 51 2 0 35 13 14 19 1 0 93 chain 6683 chr22 51304566 + 19267968 19268044 L1MB3 1562 + 1244 1320 179805 76 chain 25407 chr22 51304566 + 19268531 19268839 AluY 311 + 0 304 102646 118 4 0 25 3 0 7 0 3 151 chain 17235 chr22 51304566 + 19303553 19303825 LTR76 689 + 10 249 134967 40 13 0 10 0 1 160 14 5 11 12 0 12 chain 6804 chr22 51304566 + 19304858 19304958 L1MC2 1988 - 377 478 178921 58 13 14 29 chain 84890 chr22 51304566 + 19307413 19308453 MER11C 1089 - 16 1089 41560 83 0 2 101 0 1 104 2 10 53 0 1 119 9 10 252 1 18 52 0 3 264 chain 26143 chr22 51304566 + 19315209 19315511 AluYk4 311 - 8 310 99435 302 chain 32557 chr22 51304566 + 19317677 19318092 MLT2A1 477 - 8 477 79936 31 0 45 116 1 0 104 0 4 28 1 2 28 0 3 58 0 2 48 chain 94308 chr22 51304566 + 19328995 19330705 L1PB1 5432 + 3974 5373 38258 11 0 1 4 0 2 23 5 19 49 3 0 545 8 5 81 1 0 98 0 2 88 300 3 89 23 25 84 1 2 8 4 1 24 1 0 6 1 0 14 5 1 9 3 1 51 2 1 16 1 0 41 3 2 16 3 0 11 12 5 14 3 1 5 1 0 14 2 0 27 chain 13591 chr22 51304566 + 19360017 19360719 L1MB7 1623 - 649 905 146008 39 6 9 8 0 2 5 1 0 6 446 0 34 29 25 128 chain 22954 chr22 51304566 + 19423956 19424246 AluY 311 + 11 297 115830 53 5 0 33 0 2 34 1 0 164 chain 10632 chr22 51304566 + 19426462 19426622 L1MB3 1562 - 587 759 157685 13 20 33 14 1 0 112 chain 22754 chr22 51304566 + 19441820 19442180 THE1B 368 + 2 368 116812 42 1 16 21 19 0 33 1 0 5 1 2 48 9 8 57 5 15 31 0 1 87 chain 8948 chr22 51304566 + 19464549 19464690 MER44A 345 - 123 308 165880 38 5 16 50 11 44 37 chain 11196 chr22 51304566 + 19534729 19535012 L1MB3 1562 - 45 288 155436 49 1 0 25 52 26 5 1 0 61 5 0 20 48 41 16 chain 100510 chr22 51304566 + 19589076 19590876 Tigger1 2417 - 670 2195 36626 75 0 1 81 377 70 74 3 4 93 14 27 23 4 0 136 0 1 74 0 3 245 1 2 124 2 3 139 8 12 45 0 1 172 8 9 25 19 25 18 5 8 35 chain 45511 chr22 51304566 + 19603795 19604436 LTR71B 605 + 0 605 62489 137 26 0 13 2 0 189 18 7 34 10 1 122 0 12 90 chain 2988 chr22 51304566 + 19611630 19611667 MER82 654 + 299 336 225278 37 chain 10967 chr22 51304566 + 19612727 19612875 MER41A 554 + 381 530 156331 46 0 1 52 2 1 4 0 1 44 chain 29689 chr22 51304566 + 19613829 19614348 MER1A 529 + 0 529 85867 17 52 78 16 0 3 10 9 12 109 0 3 149 25 0 22 2 0 32 12 13 49 0 1 15 chain 25097 chr22 51304566 + 19615210 19615508 AluYk4 311 - 11 311 104312 132 0 2 166 chain 11758 chr22 51304566 + 19639663 19642372 L1MB7 1623 + 10 1181 153230 79 99 114 55 2359 803 31 0 3 38 3 0 5 7 10 33 chain 46755 chr22 51304566 + 19764590 19765117 L1PA4 6152 - 1 533 61409 18 0 4 125 0 1 384 chain 21570 chr22 51304566 + 19782261 19782506 AluSc 308 + 38 283 121882 245 chain 23527 chr22 51304566 + 19818948 19819229 AluY 311 + 16 298 112971 116 0 1 165 chain 25599 chr22 51304566 + 19913407 19913701 AluSp 311 + 0 297 101734 91 0 3 203 chain 74161 chr22 51304566 + 19921960 19923298 MER11A 1151 + 0 1151 46425 65 1 100 13 346 15 37 1 6 58 4 0 32 0 2 68 0 4 43 0 1 93 0 1 281 20 5 13 7 0 9 0 21 7 0 35 148 0 2 92 chain 91288 chr22 51304566 + 19924491 19928197 HERVK11-int 2540 + 686 2247 39201 51 5 0 14 7 0 7 52 42 18 5 0 7 32 9 44 3 0 12 2 1 14 1724 80 16 59 43 21 2 0 40 0 2 22 1 0 33 19 18 7 3 0 22 28 17 27 16 5 31 17 1 312 0 3 120 11 6 103 2 1 42 1 0 37 322 0 110 1 0 80 10 15 119 66 0 9 chain 8306 chr22 51304566 + 19939303 19939539 MER67A 545 - 195 437 169365 29 1 0 5 8 9 19 30 33 45 33 36 19 1 0 7 12 13 27 chain 24935 chr22 51304566 + 19939888 19940191 AluY 311 + 8 305 105135 166 0 1 121 7 0 9 chain 44785 chr22 51304566 + 20023357 20023941 LTR71B 605 + 10 605 63310 87 2 0 36 12 19 96 1 2 92 6 5 148 0 4 58 0 2 46 chain 24313 chr22 51304566 + 20033019 20033313 AluSp 311 - 5 299 108589 294 chain 12603 chr22 51304566 + 20034172 20034325 L1PA6 6164 - 2 151 149826 64 4 0 85 chain 26203 chr22 51304566 + 20035283 20035963 THE1C 375 + 0 373 99188 107 2 4 14 3 0 10 0 4 14 315 0 30 2 3 115 4 8 64 chain 28461 chr22 51304566 + 20091678 20091988 AluYb8 318 - 10 317 91333 182 3 0 125 chain 6128 chr22 51304566 + 20176600 20177069 L1MA3 4352 + 4158 4276 184194 38 345 0 39 4 0 13 12 10 18 chain 12839 chr22 51304566 + 20177187 20177376 AluJr 308 + 12 190 148886 25 3 0 74 1 0 17 7 0 62 chain 23668 chr22 51304566 + 20276053 20276338 AluSc5 308 - 6 297 112211 58 1 7 226 chain 22941 chr22 51304566 + 20288862 20289151 AluSc5 308 - 4 297 115904 25 7 11 257 chain 9897 chr22 51304566 + 20309694 20309811 L1PA7 6471 + 6335 6452 161082 117 chain 5493 chr22 51304566 + 20314194 20314299 L1M3c 1411 - 816 920 190112 11 0 1 44 19 18 6 1 0 24 chain 25212 chr22 51304566 + 20315825 20316090 AluYa5 310 + 34 299 103679 265 chain 25013 chr22 51304566 + 20342868 20343145 L1PA2 6032 + 5755 6031 104717 262 1 0 14 chain 23951 chr22 51304566 + 20346592 20346941 L1PB 1623 - 627 974 110612 48 1 2 5 1 0 62 24 23 162 1 0 45 chain 78160 chr22 51304566 + 20363799 20364761 LTR5_Hs 974 + 0 974 44435 459 0 4 72 1 7 117 0 1 116 7 7 21 0 1 169 chain 25811 chr22 51304566 + 20401680 20401979 AluSp 311 - 11 310 100820 299 chain 26427 chr22 51304566 + 20429262 20429549 AluYf4 310 + 0 287 98316 287 chain 24516 chr22 51304566 + 20430457 20430749 AluSx 319 + 8 301 107466 124 0 1 168 chain 3062 chr22 51304566 + 20433729 20433766 U13 108 - 0 37 223769 37 chain 6142 chr22 51304566 + 20446142 20446216 AluJr4 308 + 51 125 184061 74 chain 23752 chr22 51304566 + 20450557 20450862 AluSg7 307 - 6 307 111763 5 2 0 169 4 2 125 chain 20026 chr22 51304566 + 20455731 20455969 7SK 245 - 7 245 127056 238 chain 5493 chr22 51304566 + 20507368 20507473 L1M3c 1411 - 816 920 190111 11 0 1 44 19 18 6 1 0 24 chain 78208 chr22 51304566 + 20617807 20618769 LTR5_Hs 974 - 0 974 44415 169 0 1 21 7 7 116 0 1 117 1 7 73 0 4 458 chain 25089 chr22 51304566 + 20635644 20635993 L1PB 1623 + 649 996 104351 46 1 0 161 24 23 117 chain 24151 chr22 51304566 + 20639437 20639711 L1PA2 6032 - 0 277 109468 15 1 0 136 0 4 122 chain 23455 chr22 51304566 + 20716560 20716833 L1PA2 6032 + 5755 6032 113346 111 1 6 6 1 0 154 chain 10367 chr22 51304566 + 20722467 20722628 MSTA 426 - 233 397 158839 37 20 23 104 chain 36733 chr22 51304566 + 20735113 20735575 MER4A1 472 - 0 472 73910 49 0 1 52 0 3 329 3 9 29 chain 7069 chr22 51304566 + 20737351 20737431 LTR12C 1709 - 335 415 176952 80 chain 29541 chr22 51304566 + 20743494 20743913 LTR3B 427 - 7 427 86448 46 18 19 12 16 11 27 3 0 198 0 8 99 chain 99169 chr22 51304566 + 20745904 20747211 LTR12C 1709 - 0 1709 36981 84 12 44 40 1 0 26 0 106 6 1 0 29 0 203 38 0 47 172 0 2 75 1 0 82 0 2 50 41 0 232 1 4 6 1 0 80 0 43 46 5 14 278 chain 3405 chr22 51304566 + 20746521 20746562 LTR12C 1709 - 847 887 92166 25 1 0 15 chain 11372 chr22 51304566 + 20759107 20759233 AluYc 301 + 149 275 154806 126 chain 24463 chr22 51304566 + 20762895 20763187 L1PA4 6152 - 11 313 107740 192 0 10 100 chain 110355 chr22 51304566 + 20769392 20770762 L1PA8 5853 - 0 1365 34106 93 1 0 19 2 1 27 4 0 5 17 20 9 1 0 71 2 0 44 1 0 555 0 2 281 2 1 112 0 1 124 chain 6850 chr22 51304566 + 20771086 20771189 U6 107 - 0 107 178582 53 9 13 41 chain 21863 chr22 51304566 + 20832492 20832773 AluSp 311 - 14 301 120773 15 8 6 250 0 8 8 chain 3293 chr22 51304566 + 20835514 20835552 HY1 111 + 72 110 219102 38 chain 39175 chr22 51304566 + 20862688 20863121 LTR7Y 441 - 0 441 70499 163 0 2 5 0 6 265 chain 10428 chr22 51304566 + 20869650 20869794 MER30 238 - 0 167 158567 112 5 20 15 0 8 12 chain 5270 chr22 51304566 + 20971585 20971647 MER41A 554 + 404 466 192321 62 chain 31744 chr22 51304566 + 20998239 20998676 MER4A1 472 - 18 472 81258 108 0 2 40 7 0 27 9 30 221 5 6 20 chain 3490 chr22 51304566 + 21017718 21017895 L1M1 2793 - 1682 1864 215502 27 41 46 26 69 69 14 chain 5197 chr22 51304566 + 21033096 21033302 L1MB8 1703 - 75 229 193056 26 70 16 28 46 48 36 chain 3321 chr22 51304566 + 21076774 21076813 THE1D 372 + 333 372 218558 39 chain 18066 chr22 51304566 + 21086249 21086473 AluY 311 + 71 294 132682 52 2 0 9 0 1 161 chain 26502 chr22 51304566 + 21091914 21092217 AluSp 311 - 7 310 98033 303 chain 6354 chr22 51304566 + 21109480 21109746 L1MD3 1191 - 853 1106 182347 26 169 156 71 chain 9953 chr22 51304566 + 21112742 21112867 MER30 238 + 116 238 160816 79 3 0 43 chain 24367 chr22 51304566 + 21131493 21131797 AluSp 311 - 1 303 108278 171 0 1 6 3 0 124 chain 23742 chr22 51304566 + 21162306 21162591 AluSp 311 + 10 295 111821 26 0 1 6 1 0 252 chain 128667 chr22 51304566 + 21180714 21186224 L1PA15 4387 - 98 4321 28403 19 6 3 50 23 18 14 1 0 55 1 0 25 2 1 171 0 2 5 119 113 35 0 7 138 27 13 41 0 2 174 13 14 50 0 5 64 7 1 44 20 24 33 2 0 223 305 0 148 7 8 292 2 0 7 3100 2140 105 3 0 179 chain 18033 chr22 51304566 + 21195167 21195378 MER41A 554 + 0 211 132772 211 chain 17788 chr22 51304566 + 21206212 21206416 AluY 311 + 82 287 133451 50 0 1 154 chain 6126 chr22 51304566 + 21300932 21301002 U3 216 + 0 70 184216 70 chain 22276 chr22 51304566 + 21370616 21370895 AluY 311 + 12 300 119011 55 9 17 48 0 1 167 chain 37069 chr22 51304566 + 21373889 21374356 MER9a3 513 - 0 513 73430 8 0 3 122 0 2 103 8 25 203 0 23 10 0 1 13 chain 3041 chr22 51304566 + 21391802 21391837 LTR24 460 - 0 35 224187 35 chain 26645 chr22 51304566 + 21404785 21405090 AluYk4 311 + 0 305 97495 305 chain 4199 chr22 51304566 + 21416361 21416471 L1MB8 1703 + 1474 1586 204544 36 45 47 29 chain 13630 chr22 51304566 + 21418321 21418630 LTR23 429 + 73 287 145852 18 15 0 7 0 16 39 0 3 83 99 0 48 chain 80594 chr22 51304566 + 21425981 21426877 MER11D 897 + 0 897 43347 777 0 1 119 chain 25356 chr22 51304566 + 21440149 21440453 AluY 311 + 8 311 102913 125 1 0 178 chain 71488 chr22 51304566 + 21447628 21448611 LTR5B 1012 + 0 1003 47701 128 1 14 132 0 7 59 1 0 25 10 9 115 1 0 80 0 2 12 33 34 386 chain 14079 chr22 51304566 + 21457697 21457859 L1PA4 6152 + 5992 6152 144293 4 1 0 135 1 0 21 chain 16047 chr22 51304566 + 21461336 21461557 L1PA8 5853 - 0 217 138220 93 1 0 18 4 3 51 1 0 4 6 5 43 chain 26338 chr22 51304566 + 21465171 21465491 L1PA6 6164 - 8 327 98661 9 1 0 310 chain 17693 chr22 51304566 + 21517378 21517641 AluSp 311 + 38 297 133722 99 8 0 11 0 8 109 4 5 20 5 0 7 chain 23749 chr22 51304566 + 21538854 21539128 L1PA2 6032 + 5755 6030 111780 122 0 4 136 3 0 13 chain 24605 chr22 51304566 + 21542562 21542925 L1PB 1623 - 613 974 106966 62 1 2 5 1 0 62 24 23 162 1 0 45 chain 22731 chr22 51304566 + 21549273 21549544 AluY 311 + 12 286 116914 52 0 2 66 0 1 153 chain 78038 chr22 51304566 + 21559790 21560752 LTR5_Hs 974 + 0 974 44494 459 0 4 72 1 7 117 0 1 116 7 7 21 0 1 169 chain 13951 chr22 51304566 + 21578467 21578633 L1PA4 6152 + 5987 6151 144748 159 2 0 5 chain 25089 chr22 51304566 + 21658798 21659147 L1PB 1623 + 649 996 104350 46 1 0 161 24 23 117 chain 23530 chr22 51304566 + 21662595 21662869 L1PA2 6032 - 4 277 112960 11 5 0 136 0 4 122 chain 14785 chr22 51304566 + 21720723 21720898 AluSc5 308 - 1 176 141987 175 chain 20026 chr22 51304566 + 21743479 21743717 7SK 245 + 0 238 127055 238 chain 23819 chr22 51304566 + 21768385 21768668 AluSp 311 - 19 300 111369 164 2 0 117 chain 26652 chr22 51304566 + 21769937 21770224 AluYf4 310 - 23 310 97482 287 chain 24675 chr22 51304566 + 21786692 21786985 AluSp 311 + 10 302 106581 27 1 0 265 chain 10398 chr22 51304566 + 21814290 21814421 AluJo 314 + 161 292 158703 131 chain 25933 chr22 51304566 + 21845623 21845922 AluSp 311 - 11 310 100285 299 chain 23824 chr22 51304566 + 21856473 21856764 AluSp 311 - 11 301 111339 27 1 0 4 0 1 231 1 0 27 chain 26652 chr22 51304566 + 21873241 21873528 AluYf4 310 + 0 287 97481 287 chain 24829 chr22 51304566 + 21874436 21874730 AluSx 319 + 8 303 105730 124 0 1 170 chain 3062 chr22 51304566 + 21877699 21877736 U13 108 - 0 37 223768 37 chain 6142 chr22 51304566 + 21890086 21890160 AluJr4 308 + 51 125 184060 74 chain 23752 chr22 51304566 + 21894505 21894810 AluSg7 307 - 6 307 111762 5 2 0 169 4 2 125 chain 19699 chr22 51304566 + 21899695 21899933 7SK 245 - 7 245 128102 238 chain 24086 chr22 51304566 + 21923401 21923706 AluSz 310 + 0 304 109821 38 2 1 265 chain 22682 chr22 51304566 + 21938187 21938454 AluSp 311 - 34 302 117150 12 0 2 50 1 0 204 chain 24852 chr22 51304566 + 21955983 21956274 AluY 311 + 9 300 105612 6 4 0 253 0 4 28 chain 25808 chr22 51304566 + 21993273 21993571 AluYc 301 + 1 301 100836 119 0 2 179 chain 4873 chr22 51304566 + 22003306 22003482 LTR16C 481 - 64 240 196563 17 70 69 54 22 23 13 chain 13978 chr22 51304566 + 22005029 22005205 THE1D 372 - 192 372 144660 10 0 4 166 chain 25191 chr22 51304566 + 22013068 22013369 AluSg 306 + 0 297 103791 44 3 0 63 1 0 190 chain 25590 chr22 51304566 + 22018528 22018842 AluSp 311 + 0 310 101779 48 1 0 115 3 0 147 chain 25550 chr22 51304566 + 22021441 22021737 AluSp 311 - 8 304 101988 296 chain 4601 chr22 51304566 + 22022950 22023003 MER49 923 + 185 238 199605 53 chain 116994 chr22 51304566 + 22030657 22032004 SVA_C 1631 - 7 1589 32127 345 0 3 237 1 2 19 0 46 74 0 42 172 0 153 467 17 7 15 chain 22808 chr22 51304566 + 22076431 22076711 AluSx4 309 + 6 287 116539 124 0 1 156 chain 6569 chr22 51304566 + 22146728 22146810 5S 121 + 6 89 180701 56 1 2 25 chain 9195 chr22 51304566 + 22147216 22147342 Charlie1a 1436 + 1079 1209 164582 22 2 3 21 0 2 55 0 1 26 chain 121473 chr22 51304566 + 22201312 22202740 SVA_B 1603 + 40 1603 30544 31 1 6 127 0 3 314 0 40 264 0 82 70 1 0 24 0 5 138 1 3 16 4 6 299 3 0 135 chain 9369 chr22 51304566 + 22223685 22223789 L1PA3long 6157 + 6053 6157 163720 104 chain 28736 chr22 51304566 + 22232526 22232833 AluYb8 318 + 0 305 90183 123 2 0 182 chain 164169 chr22 51304566 + 22237232 22239116 SVA_D 2077 - 3 2022 22783 673 9 8 4 0 1 156 48 0 171 0 1 6 22 164 156 0 40 639 chain 3895 chr22 51304566 + 22238074 22238122 SVA_D 2077 - 972 1072 103993 19 0 1 28 0 51 1 chain 23051 chr22 51304566 + 22247022 22247300 AluY 311 + 0 282 115386 52 1 5 225 chain 21077 chr22 51304566 + 22262757 22263028 MER4E1 777 + 0 273 123636 23 0 2 88 2 1 12 0 1 146 chain 3777 chr22 51304566 + 22294382 22294473 MLT1C 463 + 0 91 210704 25 20 19 24 6 7 16 chain 3075 chr22 51304566 + 22347723 22347756 LTR54B 464 + 416 449 223447 33 chain 510103 chr22 51304566 + 22405363 22412141 L1PA6 6164 - 2 6164 6154 6 3 0 763 0 2 76 1 2 270 1 0 13 320 3 476 3 0 5 0 3 423 0 9 754 0 2 165 0 1 968 0 1 132 0 1 510 329 0 323 0 1 435 5 22 51 0 1 177 1 0 28 0 1 89 8 0 126 1 0 95 0 1 57 26 32 138 chain 4580 chr22 51304566 + 22460599 22460656 L1PB1 5432 + 4996 5055 199874 18 0 2 39 chain 5227 chr22 51304566 + 22467146 22467222 MSTD 398 - 253 323 192755 6 6 0 64 chain 28086 chr22 51304566 + 22487579 22488041 MER4A 717 - 169 616 92694 22 42 30 93 10 11 76 1 0 83 7 0 108 3 2 11 0 5 6 chain 39847 chr22 51304566 + 22506371 22506853 LTR15 485 - 4 485 69539 372 2 1 108 chain 149873 chr22 51304566 + 22514502 22516147 L1PA3long 6157 + 4514 6157 24628 531 1 0 213 1 0 899 chain 207465 chr22 51304566 + 22527166 22530202 L1PA5 6144 - 0 2382 18682 843 0 4 98 31 16 925 0 3 13 647 0 475 0 1 4 chain 55391 chr22 51304566 + 22529115 22529723 L1PA3long 6157 - 0 608 55464 608 chain 538739 chr22 51304566 + 22542243 22548360 L1PA5 6144 + 3 6135 3036 673 0 3 545 2 1 139 0 1 733 0 3 278 5 9 291 1 4 1337 2 0 1277 0 4 834 chain 4371 chr22 51304566 + 22554567 22554644 MER75A 77 + 0 76 202308 20 11 12 27 2 0 17 chain 24580 chr22 51304566 + 22563528 22563826 AluYk4 311 + 0 306 107083 46 1 7 221 0 2 30 chain 7733 chr22 51304566 + 22566361 22566450 L1PA5 6144 - 254 343 172688 89 chain 23082 chr22 51304566 + 22566450 22566717 L1PA5 6144 + 5877 6144 115229 267 chain 42657 chr22 51304566 + 22589563 22590156 LTR71B 605 + 16 605 65832 96 5 1 124 0 3 116 26 12 20 8 15 92 0 4 106 chain 24177 chr22 51304566 + 22591324 22591618 AluY 311 + 2 298 109331 40 5 6 75 1 0 152 0 2 21 chain 10861 chr22 51304566 + 22594292 22594798 Tigger2a 444 - 63 267 156740 63 354 52 89 chain 3712 chr22 51304566 + 22614267 22614310 L1PA16 3655 - 367 410 211762 43 chain 3748 chr22 51304566 + 22614557 22614623 L1PA16 3655 - 120 201 211194 27 12 27 27 chain 33409 chr22 51304566 + 22614623 22615066 L1PA7 6471 + 6025 6467 78547 282 20 19 141 chain 51417 chr22 51304566 + 22626003 22626576 L1PA5 6144 + 5399 5972 58023 573 chain 14679 chr22 51304566 + 22626577 22626747 L1PA5 6144 + 5974 6144 142331 170 chain 540161 chr22 51304566 + 22631183 22637194 L1PA3long 6157 - 0 6157 2796 849 0 4 144 0 5 1890 0 3 85 1 0 656 1 0 1173 0 1 263 0 1 177 1 129 200 0 4 420 0 1 81 0 1 70 chain 387865 chr22 51304566 + 22686075 22691281 L1PA8 5853 + 904 5853 10527 212 5 6 418 0 1 485 1 0 246 1 5 30 272 8 29 0 1 104 0 1 275 0 1 156 1 0 82 0 5 28 0 1 100 0 1 763 13 17 256 0 1 497 0 1 196 1 2 7 0 1 169 2 0 314 2 1 240 1 0 44 2 0 64 8 7 9 4 0 51 7 6 15 2 1 64 2 0 28 chain 22304 chr22 51304566 + 22687480 22687741 L1PA8 5853 + 3934 4195 118896 261 chain 4282 chr22 51304566 + 22739923 22739977 MLT2A1 477 - 423 477 203455 54 chain 128393 chr22 51304566 + 22739977 22742338 HERVL-int 5654 - 0 1781 28478 125 17 18 194 1 9 126 0 43 167 1 2 366 0 1 126 6 7 11 0 3 5 10 7 31 1 22 71 656 0 447 chain 48032 chr22 51304566 + 22741304 22741891 LTR22 571 - 0 571 60457 48 1 0 39 15 0 484 chain 15697 chr22 51304566 + 22744621 22744929 L1PB1 5432 - 2841 3150 139276 23 16 15 15 13 14 25 2 0 36 5 6 117 26 28 30 chain 20475 chr22 51304566 + 22771751 22772014 L1PBa1 4058 + 1133 1401 125697 54 0 1 92 0 2 57 10 12 50 chain 113405 chr22 51304566 + 22791176 22792635 HERVL-int 5654 - 0 1477 33251 337 1 9 40 7 0 43 3 0 5 9 11 292 2 0 239 0 1 190 10 11 51 3 0 13 0 21 214 chain 23828 chr22 51304566 + 22792635 22792950 MLT2A1 477 - 163 477 111318 109 0 1 24 13 11 169 chain 111488 chr22 51304566 + 22795695 22796946 SVA_C 1631 + 235 1608 33814 562 0 82 32 1 0 44 1 0 9 1 0 33 0 40 196 0 3 372 chain 57091 chr22 51304566 + 22798201 22798882 L1PA7 6471 + 5774 6457 54479 531 13 15 137 chain 16086 chr22 51304566 + 22800070 22800245 L1PA3long 6157 - 428 603 138097 175 chain 24708 chr22 51304566 + 22800245 22800529 L1PA3long 6157 + 5872 6156 106391 284 chain 38974 chr22 51304566 + 22807071 22807608 LTR10B1 532 + 19 532 70775 154 12 3 14 13 0 41 5 3 298 chain 11073 chr22 51304566 + 22817972 22818346 HUERS-P3-int 2218 - 1821 2136 155922 29 14 8 24 48 43 13 8 0 15 67 40 15 1 0 3 1 0 23 4 1 23 1 0 17 3 0 10 7 4 20 1 0 27 chain 89550 chr22 51304566 + 22821020 22822452 L1PB1 5432 + 3937 5246 39795 266 16 16 271 140 8 12 0 1 33 0 1 5 1 0 31 3 1 47 4 6 141 2 1 20 6 14 203 0 2 83 17 20 14 1 0 14 1 0 9 7 3 8 2 0 11 0 2 28 1 0 5 5 9 13 2 1 10 chain 84561 chr22 51304566 + 22822784 22823833 MER11B 1079 + 0 1079 41699 316 10 27 48 0 1 374 5 7 103 0 1 107 1 11 51 5 4 29 chain 8794 chr22 51304566 + 22834228 22834342 MER44D 709 + 0 115 166683 11 1 2 102 chain 50507 chr22 51304566 + 22864264 22864852 LTR10C 591 - 0 591 58646 79 1 3 260 0 1 248 chain 27351 chr22 51304566 + 22872265 22872564 AluYf5 307 - 10 307 95110 33 2 0 264 chain 9188 chr22 51304566 + 22905276 22905628 MLT1B 390 - 17 372 164615 51 0 1 23 1 0 24 211 218 29 4 0 9 chain 6664 chr22 51304566 + 22909370 22909459 MLT1A0 366 - 257 347 179964 51 1 0 4 0 1 5 0 1 28 chain 32009 chr22 51304566 + 22912820 22913195 L1PA4 6152 - 9 390 80849 149 0 5 27 2 3 197 chain 6611 chr22 51304566 + 22932851 22932998 THE1D 372 - 244 372 180367 43 19 29 12 29 0 44 chain 10111 chr22 51304566 + 22961763 22961912 MER30 238 - 3 170 160038 45 3 0 21 0 1 37 4 24 39 chain 80638 chr22 51304566 + 22991817 22992789 LTR5_Hs 974 - 0 974 43326 169 0 1 21 7 7 116 0 1 659 chain 45619 chr22 51304566 + 23129086 23129664 LTR22 571 - 0 571 62383 288 0 1 30 17 9 243 chain 128690 chr22 51304566 + 23136910 23138837 HERVL-int 5654 + 2189 3808 28391 28 1 2 433 312 0 88 2 3 596 1 2 208 5 6 253 chain 21061 chr22 51304566 + 23139421 23139673 HERVL-int 5654 - 1606 1858 123690 252 chain 42414 chr22 51304566 + 23218397 23218877 L1P1 4361 - 33 511 66129 23 1 0 155 1 0 300 chain 74183 chr22 51304566 + 23218878 23219686 L1PA3long 6157 + 5348 6156 46419 808 chain 4795 chr22 51304566 + 23282303 23282370 L1MB5 1630 + 1553 1618 197411 48 1 0 13 1 0 4 chain 36271 chr22 51304566 + 23310357 23310830 THE1B-int 1605 - 14 499 74533 127 1 2 187 0 3 85 4 12 69 chain 371462 chr22 51304566 + 23310842 23315322 L1PA6 6164 + 1649 6159 11044 11 0 1 66 0 1 39 0 2 548 0 1 5 13 5 110 0 1 352 2 1 6 0 2 348 0 5 30 1 2 4 0 1 50 0 4 62 0 1 57 0 1 426 5 6 319 0 1 100 0 4 138 1 9 387 1 4 110 0 1 48 4 3 404 0 1 68 0 2 188 5 0 172 1 9 148 6 0 90 0 1 155 chain 103483 chr22 51304566 + 23321981 23323617 HUERS-P3b-int 2065 + 18 1601 35871 76 4 0 59 20 23 9 1 0 114 94 15 110 0 1 41 0 3 218 4 0 70 21 20 48 6 5 18 1 0 140 5 9 87 3 2 4 0 1 129 0 1 70 6 49 131 1 0 44 44 31 7 4 0 21 0 1 26 chain 7885 chr22 51304566 + 23333878 23333965 L1PA6 6164 + 5823 5910 171770 87 chain 19809 chr22 51304566 + 23333965 23334198 L1PA6 6164 + 5914 6147 127785 233 chain 15150 chr22 51304566 + 23341573 23341846 L1MA5 2750 + 41 300 140912 28 23 22 13 1 2 18 15 0 131 0 2 16 8 7 20 chain 102320 chr22 51304566 + 23347652 23348999 L1PA5 6144 + 4969 6144 36189 498 173 0 344 0 1 332 chain 14248 chr22 51304566 + 23348154 23348319 L1PA3long 6157 + 5981 6146 143731 165 chain 45271 chr22 51304566 + 23351239 23351871 PABL_A 660 + 0 635 62747 407 24 28 73 0 2 14 12 8 46 1 0 4 5 7 46 chain 106690 chr22 51304566 + 23358264 23359751 LTR12C 1709 - 0 1709 35069 84 2 1 151 0 1 6 0 1 4 1 0 19 0 14 197 14 7 15 24 0 52 2 208 112 1 0 369 10 4 85 1 44 40 26 22 55 1 2 216 chain 30366 chr22 51304566 + 23370081 23371304 MER41B 635 - 25 611 83748 41 15 20 57 37 72 202 406 53 30 9 10 32 1 0 26 324 0 43 chain 22061 chr22 51304566 + 23376425 23376688 AluSp 311 + 32 296 119963 249 0 1 14 chain 3117 chr22 51304566 + 23389094 23389129 MER57B1 401 - 0 35 222605 35 chain 332165 chr22 51304566 + 23390691 23394909 L1PB1 5432 + 1194 5420 12122 33 0 2 173 2 0 877 0 1 94 0 4 22 0 1 96 4 5 12 1 5 278 0 1 44 1 0 60 0 1 27 0 4 483 0 1 306 6 9 92 0 4 341 0 11 193 6 7 7 1 0 226 7 9 106 0 1 61 8 7 281 0 4 20 17 15 20 2 0 9 1 0 10 19 13 110 1 0 14 2 0 3 11 0 30 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 chain 7576 chr22 51304566 + 23514264 23514364 L1MB8 1703 - 161 262 173692 28 0 1 5 1 0 6 0 1 60 chain 5939 chr22 51304566 + 23515210 23515309 L1MC1 2226 - 280 372 185789 32 1 0 26 9 3 31 chain 25336 chr22 51304566 + 23518431 23518798 LTR14A 344 + 2 344 103045 110 38 7 143 4 10 72 chain 4871 chr22 51304566 + 23568794 23568908 MER58A 224 + 39 154 196587 42 26 27 17 10 10 19 chain 51503 chr22 51304566 + 23689580 23690303 L1PA8A 6298 - 8 644 57964 173 0 1 46 0 4 186 1 0 4 98 0 68 0 7 147 chain 4344 chr22 51304566 + 23702278 23702330 MER45A 178 - 57 109 202681 52 chain 5938 chr22 51304566 + 23709242 23709312 MER5A 189 + 6 76 185799 70 chain 50714 chr22 51304566 + 23709379 23709999 LTR6A 649 + 0 624 58493 406 0 5 21 1 0 192 chain 19910 chr22 51304566 + 23720452 23720728 LTR61 567 + 268 567 127438 72 0 17 36 5 8 11 6 10 20 1 0 125 chain 46627 chr22 51304566 + 23749608 23750581 MER4A 717 - 0 717 61518 8 1 0 4 0 1 18 9 7 169 24 21 81 1 41 40 0 1 1 4 0 52 0 5 7 7 14 119 301 0 81 0 1 46 chain 12529 chr22 51304566 + 23764772 23764941 L1PA8 5853 - 0 164 150119 92 2 1 16 1 0 46 3 0 9 chain 28990 chr22 51304566 + 23809680 23810057 L1PB 1623 + 649 1024 89034 138 1 0 68 4 3 166 chain 8859 chr22 51304566 + 23831315 23831434 AluSc8 310 + 38 154 166330 96 5 2 18 chain 23224 chr22 51304566 + 23837605 23837876 L1PA3long 6157 + 5887 6157 114574 26 2 1 243 chain 3389 chr22 51304566 + 23857643 23857680 MER117 194 - 51 88 217319 37 chain 79475 chr22 51304566 + 23878248 23879200 LTR5_Hs 974 + 0 957 43839 285 0 1 153 0 3 334 7 7 42 0 1 71 0 1 13 1 0 46 chain 8017 chr22 51304566 + 23879214 23879376 HERVK-int 6823 + 0 154 170954 5 1 0 11 5 3 17 11 10 16 1 0 13 1 0 25 2 1 19 1 0 34 chain 5266 chr22 51304566 + 23879376 23879437 LTR5B 1012 + 951 1012 192354 61 chain 70241 chr22 51304566 + 23889087 23890083 MER11A 1151 + 0 1151 48296 42 13 113 44 2 0 95 0 11 24 6 0 59 0 1 54 0 3 87 0 1 4 1 2 9 1 0 133 0 3 5 2 1 36 0 1 15 0 4 56 1 0 12 45 79 47 0 1 127 0 7 9 7 6 60 chain 72715 chr22 51304566 + 23902665 23903477 SVA_D 2077 - 0 890 47160 682 1 0 6 0 1 80 1 79 42 chain 4667 chr22 51304566 + 23926842 23926922 MLT2D 439 + 1 83 198895 30 12 13 26 0 1 12 chain 3847 chr22 51304566 + 23959670 23959715 LTR71B 605 + 560 605 209685 45 chain 548921 chr22 51304566 + 24005170 24011324 L1PA4 6152 + 6 6152 1586 66 1 2 54 14 0 159 0 1 399 0 3 40 0 1 691 0 5 774 0 2 599 0 1 380 3 0 187 3 1 1650 0 1 885 2 1 238 3 0 6 chain 22186 chr22 51304566 + 24015795 24016064 AluSc 308 - 17 285 119418 34 1 0 234 chain 4095 chr22 51304566 + 24064603 24064676 MER4A 717 + 0 62 206009 29 15 4 29 chain 23768 chr22 51304566 + 24089738 24090016 AluY 311 + 2 288 111660 221 0 8 57 chain 27724 chr22 51304566 + 24139178 24139475 AluYf4 310 - 4 301 93956 297 chain 3461 chr22 51304566 + 24157812 24157854 L1MD2 1676 + 1237 1279 215982 42 chain 174004 chr22 51304566 + 24196029 24198483 SVA_E 1901 + 0 1892 21591 153 2 0 664 129 0 55 97 0 55 102 0 88 1 0 12 225 0 726 6 0 139 chain 7439 chr22 51304566 + 24196849 24196977 SVA_E 1901 + 817 940 69184 14 18 17 79 4 0 13 chain 4591 chr22 51304566 + 24197050 24197129 SVA_E 1901 + 965 1044 69184 79 chain 5928 chr22 51304566 + 24197184 24197286 SVA_E 1901 + 1098 1192 69184 80 0 1 4 16 7 2 chain 8834 chr22 51304566 + 24197387 24197539 SVA_E 1901 + 1231 1382 69184 134 4 3 14 chain 2539 chr22 51304566 + 24197573 24197612 SVA_E 1901 + 817 855 101495 26 1 0 12 chain 24374 chr22 51304566 + 24207323 24207621 AluSp 311 + 2 300 108228 298 chain 26270 chr22 51304566 + 24212867 24213177 AluSp 311 - 0 310 98931 310 chain 44540 chr22 51304566 + 24242394 24242902 MER9a2 513 + 0 513 63540 327 0 5 181 chain 80062 chr22 51304566 + 24249270 24250236 LTR5_Hs 974 + 0 974 43559 285 0 1 281 0 1 91 0 1 159 8 15 31 8 6 103 chain 7056 chr22 51304566 + 24253628 24253709 5S 121 - 31 112 177057 81 chain 31713 chr22 51304566 + 24253709 24254096 MER48 407 + 0 407 81311 137 3 23 247 chain 40475 chr22 51304566 + 24267165 24267688 LTR10G 522 + 0 522 68628 116 1 0 227 11 10 95 0 2 58 1 0 14 chain 75628 chr22 51304566 + 24272103 24273047 LTR13 1007 + 7 956 45699 66 2 0 48 0 2 140 0 2 116 4 5 274 0 1 21 17 17 116 0 1 140 chain 134240 chr22 51304566 + 24278588 24280096 SVA_D 2077 + 12 2074 27160 27 18 1 798 0 575 648 4 0 13 chain 77411 chr22 51304566 + 24297741 24298790 MER11C 1089 + 0 1063 44772 247 4 13 57 5 9 60 1 0 146 36 35 11 1 0 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 74860 chr22 51304566 + 24326913 24327949 MER11C 1089 - 26 1082 46085 143 1 0 56 0 1 125 0 1 38 1 0 4 1 5 107 52 51 146 1 0 60 5 9 62 0 9 21 0 5 213 chain 5052 chr22 51304566 + 24349569 24349631 tRNA-Gln-CAA_ 72 - 10 72 194618 62 chain 14244 chr22 51304566 + 24357458 24357727 L1PB1 5432 - 22 274 143745 6 1 0 13 1 0 21 1 0 17 7 5 16 8 5 19 14 5 7 3 0 16 0 7 36 1 0 15 1 0 53 2 0 11 chain 107626 chr22 51304566 + 24359301 24360848 L1PBa1 4058 - 2527 4048 34820 70 1 2 124 1 0 6 6 7 15 0 1 208 12 21 411 68 51 49 1 0 122 8 0 16 7 6 95 1 0 4 0 1 16 12 7 157 1 0 87 1 0 6 4 2 11 1 0 26 chain 34239 chr22 51304566 + 24360981 24361437 LTR2 463 - 0 463 77294 158 5 6 169 15 18 49 1 4 59 chain 22473 chr22 51304566 + 24371355 24371642 AluSp 311 + 17 295 118142 271 9 0 7 chain 23500 chr22 51304566 + 24374328 24374633 AluSp 311 + 7 299 113126 282 13 0 10 chain 11264 chr22 51304566 + 24407141 24407330 MER30 238 + 46 236 155177 60 39 37 47 0 3 43 chain 7305 chr22 51304566 + 24420645 24420723 L1PA2 6032 - 3 81 175402 78 chain 14299 chr22 51304566 + 24424420 24424630 Tigger1a_Art 216 - 10 216 143567 42 8 4 57 1 0 48 0 1 20 1 2 4 1 0 28 chain 91744 chr22 51304566 + 24460982 24462011 SVA_D 2077 - 0 2075 39054 570 0 1053 418 8 0 11 4 5 18 chain 29375 chr22 51304566 + 24490499 24490804 AluYb8 318 + 0 305 87186 305 chain 7614 chr22 51304566 + 24507580 24507754 MER47A 366 - 173 346 173454 46 62 62 49 1 0 16 chain 2728 chr22 51304566 + 24588258 24588308 LTR56 451 + 13 63 229754 14 7 6 7 0 1 22 chain 5172 chr22 51304566 + 24588430 24588507 LTR48B 642 - 0 76 193334 45 4 3 28 chain 75959 chr22 51304566 + 24589202 24590020 L1PA3long 6157 - 1332 2150 45506 818 chain 119953 chr22 51304566 + 24590020 24591343 L1PA3long 6157 + 4815 6147 31074 17 0 1 48 0 4 132 1 0 142 0 5 983 chain 5341 chr22 51304566 + 24593231 24593296 LTR8 732 + 501 566 191631 65 chain 22609 chr22 51304566 + 24598496 24598793 AluY 311 + 0 288 117543 52 1 5 70 13 0 161 chain 39956 chr22 51304566 + 24599982 24600513 MER41A 554 + 0 546 69386 349 13 14 93 1 14 49 0 1 26 chain 32673 chr22 51304566 + 24602629 24603167 LTR19A 502 - 0 502 79725 63 6 16 45 80 1 18 2 0 129 1 0 16 0 37 143 1 0 34 chain 73951 chr22 51304566 + 24606859 24607817 LTR5_Hs 974 - 0 974 46539 101 0 11 8 10 1 19 8 15 163 1 0 366 0 1 122 1 0 39 5 13 115 chain 10605 chr22 51304566 + 24613971 24614143 MER49 923 + 596 759 157804 31 28 19 113 chain 22558 chr22 51304566 + 24669740 24670015 AluSp 311 - 24 301 117769 10 0 2 265 chain 57604 chr22 51304566 + 24696005 24696701 L1PA8A 6298 - 9 716 54183 170 0 1 48 0 4 186 1 0 71 0 7 220 chain 152210 chr22 51304566 + 24712268 24714505 SVA_D 2077 - 21 2053 24310 619 1 225 160 1 0 14 0 2 77 503 61 137 3 0 21 12 15 273 0 1 396 0 1 6 0 10 14 chain 5142 chr22 51304566 + 24713140 24713228 SVA_D 2077 - 891 1079 127599 65 1 101 22 chain 28935 chr22 51304566 + 24713296 24713617 SVA_F 1814 - 523 848 89288 17 1 0 75 0 1 29 0 4 199 chain 24576 chr22 51304566 + 24728915 24729212 AluSp 311 + 1 299 107099 234 0 1 63 chain 14482 chr22 51304566 + 24763309 24763511 MER30 238 + 0 231 142942 16 0 18 77 4 18 68 3 0 34 chain 237307 chr22 51304566 + 24768069 24770742 L1PA4 6152 + 3457 6141 16919 308 9 17 884 0 1 634 4 8 589 3 1 242 chain 24478 chr22 51304566 + 24777574 24777870 AluY 311 + 4 301 107662 128 0 1 168 chain 54100 chr22 51304566 + 24784051 24784658 L1PA4 6152 - 0 604 56293 253 4 1 350 chain 17009 chr22 51304566 + 24885408 24885653 L1MA2 4263 + 3880 4110 135567 76 16 9 93 7 0 47 1 0 5 chain 3107 chr22 51304566 + 24930121 24930155 HERVL40-int 1241 - 16 50 222803 34 chain 7788 chr22 51304566 + 24949187 24949282 MER30 238 - 1 99 172366 38 0 3 57 chain 24890 chr22 51304566 + 24964518 24964821 AluSg7 307 - 4 306 105410 8 2 0 162 1 2 130 chain 22220 chr22 51304566 + 24976035 24976304 AluSp 311 + 11 288 119261 42 0 3 32 0 6 83 1 0 111 chain 20746 chr22 51304566 + 25002118 25002350 L1PA5 6144 - 12 244 124800 232 chain 78317 chr22 51304566 + 25026425 25027378 LTR5_Hs 974 - 13 974 44367 156 0 1 21 7 7 116 0 1 128 0 6 525 chain 26939 chr22 51304566 + 25033358 25033640 AluYd8 298 - 16 298 96493 282 chain 22018 chr22 51304566 + 25078954 25079223 AluSp 311 - 43 310 120148 136 2 0 131 chain 40547 chr22 51304566 + 25087052 25087503 LTR7 482 - 0 482 68518 190 0 31 261 chain 50663 chr22 51304566 + 25126902 25127862 PABL_A 660 + 0 660 58526 51 0 4 369 0 3 2 311 0 73 0 1 92 0 4 38 2 1 22 chain 48462 chr22 51304566 + 25136536 25137575 L1PB1 5432 + 2623 3331 60141 110 6 0 36 7 9 41 12 14 114 0 1 51 8 11 12 14 12 245 333 2 50 chain 23896 chr22 51304566 + 25156483 25156770 AluSp 311 + 11 305 110920 71 0 9 20 1 0 21 1 0 173 chain 7154 chr22 51304566 + 25165799 25165943 MER30 238 - 79 238 176375 35 5 18 35 0 15 10 12 0 15 9 8 23 chain 22807 chr22 51304566 + 25167147 25167465 AluY 311 + 0 304 116540 131 28 13 77 2 3 80 chain 24854 chr22 51304566 + 25180636 25180938 AluSp 311 - 4 303 105602 6 2 0 169 1 0 124 chain 3968 chr22 51304566 + 25191642 25191687 L1MB5 1630 + 1270 1315 207864 45 chain 9637 chr22 51304566 + 25197489 25197662 L1PB1 5432 - 224 390 162413 39 3 1 9 2 0 3 1 0 12 1 0 6 1 0 21 19 19 56 chain 6587 chr22 51304566 + 25207061 25207156 MER20 218 + 30 131 180563 55 8 14 32 chain 18731 chr22 51304566 + 25211717 25211996 LOR1a 498 - 209 498 130877 59 33 35 38 1 9 148 chain 89288 chr22 51304566 + 25232969 25233984 LTR13 1007 - 0 1007 39892 577 9 1 429 chain 26735 chr22 51304566 + 25234163 25234565 LOR1b 457 - 0 415 97202 223 3 4 24 1 0 4 12 24 35 2 0 43 3 8 14 2 0 36 chain 26750 chr22 51304566 + 25236809 25237115 AluYk4 311 - 4 310 97164 306 chain 27261 chr22 51304566 + 25249449 25250119 THE1A 353 - 0 353 95399 119 315 0 32 1 0 89 5 4 109 chain 3298 chr22 51304566 + 25262272 25262308 MIRb 242 - 108 144 219005 36 chain 4393 chr22 51304566 + 25271215 25271486 MER58B 340 + 59 329 202035 37 195 194 39 chain 25876 chr22 51304566 + 25300265 25300569 AluYf4 310 + 0 305 100547 206 1 2 97 chain 25803 chr22 51304566 + 25307744 25308047 AluY 311 + 5 306 100851 286 2 0 15 chain 25799 chr22 51304566 + 25319585 25319888 AluSp 311 - 8 311 100873 303 chain 32413 chr22 51304566 + 25329859 25330256 PABL_A 660 - 230 636 80186 67 0 1 155 1 0 114 0 9 60 chain 22775 chr22 51304566 + 25337647 25337920 AluSc5 308 - 20 297 116705 66 0 1 45 0 3 162 chain 3429 chr22 51304566 + 25343791 25343833 MLT1K 546 - 361 403 216592 42 chain 24508 chr22 51304566 + 25374077 25374421 THE1A 353 + 0 341 107501 13 2 0 34 0 1 48 1 0 16 0 1 6 16 15 64 1 0 143 chain 25614 chr22 51304566 + 25375325 25375615 AluYk4 311 - 21 311 101659 290 chain 22734 chr22 51304566 + 25383960 25384266 AluSq2 311 + 0 303 116905 127 34 31 145 chain 29387 chr22 51304566 + 25396151 25396459 AluYa5 310 - 2 310 87131 308 chain 23377 chr22 51304566 + 25432073 25432337 AluSp 311 - 38 302 113774 264 chain 4655 chr22 51304566 + 25445842 25445956 MIR 256 + 29 156 199011 19 26 28 14 12 23 43 chain 22225 chr22 51304566 + 25503085 25503391 AluY 311 + 4 290 119232 105 28 8 173 chain 3071 chr22 51304566 + 25513727 25513761 MLT1D 503 - 21 55 223543 34 chain 9547 chr22 51304566 + 25536337 25536452 AluYk4 311 - 9 122 162849 9 2 0 104 chain 4149 chr22 51304566 + 25584948 25585057 MLT2D 439 - 77 133 205254 48 53 0 8 chain 23920 chr22 51304566 + 25602241 25602522 AluSp 311 + 13 295 110810 268 0 1 13 chain 44677 chr22 51304566 + 25611059 25611570 MER9a3 513 + 0 513 63402 18 0 1 459 0 1 34 chain 3692 chr22 51304566 + 25621143 25621251 MIRb 242 + 19 126 212049 33 48 47 27 chain 28636 chr22 51304566 + 25629830 25630199 L1PA8 5853 + 5485 5847 90573 77 1 0 48 2 0 70 1 0 8 2 1 51 2 1 19 1 0 87 chain 4160 chr22 51304566 + 25661782 25661832 MIR3 191 - 73 123 205093 50 chain 13248 chr22 51304566 + 25665016 25665179 LTR26 622 - 0 163 147293 163 chain 10163 chr22 51304566 + 25666271 25666427 MLT1A 405 - 0 155 159784 111 19 18 26 chain 132380 chr22 51304566 + 25673122 25674630 SVA_D 2077 - 21 2067 27547 618 0 535 135 40 0 18 0 40 320 0 3 377 chain 25482 chr22 51304566 + 25682095 25682405 AluSx1 309 + 0 305 102306 17 3 0 266 2 0 22 chain 25959 chr22 51304566 + 25689104 25689468 THE1B 368 - 0 368 100179 125 2 1 12 1 0 12 13 20 29 1 0 169 chain 36089 chr22 51304566 + 25732212 25732802 LTR71B 605 - 0 603 74775 212 5 4 54 2 1 161 110 125 46 chain 3808 chr22 51304566 + 25735988 25736033 LTR71B 605 - 0 45 210267 45 chain 426535 chr22 51304566 + 25736074 25740956 L1PA4 6152 - 0 6152 9385 6 0 5 219 1 4 45 0 8 323 0 1 162 1 3 709 0 3 204 0 1225 98 0 5 800 2 0 1188 0 6 189 1 0 110 0 1 697 5 19 122 chain 5787 chr22 51304566 + 25778290 25778421 L1MC1 2226 + 1889 2015 187303 28 1 0 28 21 22 13 9 6 5 2 0 24 chain 3076 chr22 51304566 + 25782414 25782449 MER103C 291 - 136 171 223422 35 chain 4160 chr22 51304566 + 25808561 25808623 MSTA 426 - 36 100 205094 27 4 6 31 chain 12278 chr22 51304566 + 25810522 25810677 AluY 311 + 0 159 151083 63 1 4 65 0 1 26 chain 27747 chr22 51304566 + 25811015 25811359 LTR14A 344 + 0 344 93877 233 4 5 69 1 0 37 chain 34003 chr22 51304566 + 25815807 25816257 LTR2 463 - 0 463 77609 88 12 13 33 0 11 114 0 1 203 chain 28124 chr22 51304566 + 25856776 25857142 L1PA8 5853 + 5485 5845 92556 36 0 2 41 1 0 46 2 0 70 1 0 8 1 0 16 1 0 36 3 2 18 2 1 84 chain 11943 chr22 51304566 + 25876840 25877037 MLT2B4 540 - 337 540 152431 4 0 1 20 40 45 133 chain 3017 chr22 51304566 + 25886089 25886125 MLT1J 494 + 251 287 224672 36 chain 5420 chr22 51304566 + 25907658 25907730 MLT2A2 560 - 490 560 190808 44 3 1 25 chain 5226 chr22 51304566 + 25928691 25928770 MADE1 96 + 0 95 192764 38 4 20 37 chain 7177 chr22 51304566 + 25936034 25936148 L1MC3 1789 - 579 698 176224 70 13 18 31 chain 58768 chr22 51304566 + 25967822 25968538 L1PA5 6144 - 1 718 53543 10 4 1 47 5 3 512 0 2 93 0 4 45 chain 58335 chr22 51304566 + 26017140 26017989 HUERS-P3b-int 2065 - 142 974 53787 40 5 1 51 19 16 14 2 0 72 3 1 34 3 0 56 1 0 24 1 0 13 2 0 80 8 6 43 2 1 71 12 13 155 1 3 8 0 1 129 chain 90436 chr22 51304566 + 26021092 26022100 LTR13 1007 + 0 1007 39496 305 1 0 702 chain 28488 chr22 51304566 + 26148155 26148453 AluYa5 310 - 12 310 91236 298 chain 25094 chr22 51304566 + 26151170 26151472 AluSp 311 - 9 311 104326 302 chain 4494 chr22 51304566 + 26152448 26152499 MER63A 208 - 47 98 200859 51 chain 40055 chr22 51304566 + 26155152 26155644 L1PA7 6471 + 5963 6468 69242 143 0 9 96 0 2 28 4 6 221 chain 3061 chr22 51304566 + 26169754 26169787 MER57B1 401 - 70 103 223808 33 chain 3449 chr22 51304566 + 26182423 26182470 L1MD 993 + 789 836 216214 47 chain 22016 chr22 51304566 + 26212323 26212599 L1PA6 6164 - 8 286 120158 112 0 2 164 chain 27825 chr22 51304566 + 26218588 26218999 LTR2C 499 - 0 410 93603 61 0 3 97 37 38 14 2 0 98 3 0 99 chain 4975 chr22 51304566 + 26229621 26229684 MIRb 242 + 73 136 195415 63 chain 3931 chr22 51304566 + 26230461 26230517 MER81 114 + 1 58 208396 13 1 2 42 chain 3216 chr22 51304566 + 26275077 26275116 MER58A 224 + 45 83 220643 4 1 0 34 chain 7922 chr22 51304566 + 26292727 26292824 MER63A 208 - 41 139 171511 93 0 1 4 chain 80214 chr22 51304566 + 26322773 26323831 MER11C 1089 + 0 1073 43500 246 0 9 62 0 4 65 1 0 146 47 46 112 1 5 4 1 0 38 0 1 127 0 1 54 1 0 62 1 0 82 0 1 8 chain 3422 chr22 51304566 + 26329595 26329634 MADE1 96 + 57 96 216726 39 chain 29842 chr22 51304566 + 26346847 26347221 MLT2A1 477 - 101 477 85305 160 1 0 4 4 2 38 0 4 27 0 1 140 chain 3415 chr22 51304566 + 26382154 26382195 MIRc 230 + 92 133 216851 41 chain 25042 chr22 51304566 + 26424578 26424875 AluY 311 + 0 304 104584 123 11 18 163 chain 12283 chr22 51304566 + 26434987 26435209 MLT2A2 560 - 277 496 151071 65 49 50 26 4 0 78 chain 6007 chr22 51304566 + 26461169 26461336 MER20 218 - 0 175 185173 53 83 91 31 chain 6040 chr22 51304566 + 26465956 26466042 MER53 195 - 107 195 184892 55 1 3 30 chain 45427 chr22 51304566 + 26490305 26490906 LTR12 884 - 269 884 62564 239 2 0 37 23 0 243 0 41 23 1 0 7 1 0 25 chain 36205 chr22 51304566 + 26493251 26493807 L1MA5A 2387 - 186 726 74621 18 1 0 28 9 7 41 7 6 10 23 22 36 2 1 10 10 0 361 chain 20674 chr22 51304566 + 26518488 26518767 AluSc8 310 + 30 305 125060 92 0 1 9 10 13 95 0 1 57 9 0 7 chain 21421 chr22 51304566 + 26528863 26529131 L1PA7 6471 - 2 269 122439 10 2 0 146 4 5 106 chain 20329 chr22 51304566 + 26529338 26529571 L1PA4 6152 + 5910 6143 126142 233 chain 2555 chr22 51304566 + 26551257 26551309 LTR16C 481 + 205 258 232440 28 12 13 12 chain 5450 chr22 51304566 + 26569608 26569692 MLT1A 405 - 18 101 190528 14 12 11 58 chain 27553 chr22 51304566 + 26603876 26604180 AluYg6 310 - 13 310 94494 166 7 0 131 chain 14346 chr22 51304566 + 26614214 26614437 L1PA8 5853 - 0 215 143394 6 1 0 50 3 0 37 1 0 19 2 1 49 22 20 33 chain 85100 chr22 51304566 + 26656119 26657486 L1PB1 5432 - 5 1242 41479 4 1 0 8 1 0 11 1 0 13 1 0 21 1 0 24 2 0 15 7 4 19 40 28 44 18 16 47 23 17 10 5 4 8 1 0 20 1 0 3 92 0 8 3 0 290 2 0 16 0 1 164 4 0 10 0 1 238 8 10 183 chain 4108 chr22 51304566 + 26660311 26660359 MIRc 230 + 66 114 205796 48 chain 57714 chr22 51304566 + 26696126 26696760 L1PA4 6152 - 0 639 54129 6 0 5 628 chain 4342 chr22 51304566 + 26714926 26714977 MER63A 208 - 52 103 202698 51 chain 3656 chr22 51304566 + 26781211 26781276 MLT1-int 490 - 119 184 212660 24 0 1 6 9 8 26 chain 24285 chr22 51304566 + 26788837 26789112 AluSp 311 - 26 301 108739 275 chain 3403 chr22 51304566 + 26798124 26798167 MLT1K 546 + 491 534 217017 43 chain 4186 chr22 51304566 + 26829067 26829114 MIRb 242 + 93 140 204749 47 chain 27069 chr22 51304566 + 26834660 26835051 MLT2A1 477 - 82 475 96041 10 4 0 83 5 6 90 11 11 21 1 5 24 2 3 140 chain 109813 chr22 51304566 + 26850490 26851707 L1PA4 6152 + 4933 6151 34254 1169 0 1 9 5 0 20 0 5 14 chain 24522 chr22 51304566 + 26857826 26858110 AluSp 311 + 16 300 107428 284 chain 32454 chr22 51304566 + 26893440 26894637 L1PB1 5432 + 4868 5421 80104 7 0 2 114 311 8 47 0 2 5 2 0 50 1 2 9 1 0 24 1 0 6 1 0 13 17 11 52 2 1 16 1 0 43 1 0 16 1 0 6 16 6 19 340 22 21 1 0 21 1 0 13 1 0 17 chain 30675 chr22 51304566 + 26906999 26907449 MLT2A1 477 - 0 477 83084 37 13 49 6 4 0 83 5 6 92 0 1 23 0 1 7 4 1 36 6 1 134 chain 19461 chr22 51304566 + 26945739 26946029 AluSc8 310 + 25 308 128785 84 2 1 13 7 3 23 18 16 143 chain 6484 chr22 51304566 + 26986584 26986687 MER20 218 + 38 137 181363 46 14 10 43 chain 11541 chr22 51304566 + 27001915 27002093 MER30 238 + 40 238 154138 68 13 30 58 4 7 35 chain 29969 chr22 51304566 + 27007419 27007737 AluYb8 318 - 0 318 84917 318 chain 82829 chr22 51304566 + 27009355 27010392 MER11C 1089 + 0 1054 42406 246 0 9 62 0 4 40 0 1 24 1 0 304 1 5 4 1 0 38 0 1 127 0 1 54 1 0 134 chain 39188 chr22 51304566 + 27027936 27028403 LTR7Y 441 - 0 441 70472 276 31 0 140 1 6 19 chain 23830 chr22 51304566 + 27049406 27049732 MER87B 500 + 0 321 111310 115 1 0 18 1 0 41 4 7 123 6 0 17 chain 4673 chr22 51304566 + 27142451 27142504 MIRb 242 - 125 178 198831 53 chain 25711 chr22 51304566 + 27145584 27146134 L1PB1 5432 - 10 526 101245 18 1 0 13 1 0 6 0 1 14 1 0 24 2 0 11 12 9 18 96 88 52 2 0 9 21 16 6 1 0 22 5 0 9 13 8 112 1 0 80 chain 9692 chr22 51304566 + 27150790 27151318 L1PB1 5432 + 5221 5420 162130 15 1 0 41 45 31 19 308 0 5 1 0 14 2 0 24 4 3 18 1 0 13 1 0 16 chain 38480 chr22 51304566 + 27162733 27163286 LTR12_ 688 + 0 688 71470 166 1 2 135 45 46 110 0 133 96 chain 26408 chr22 51304566 + 27166115 27166404 L1PA4 6152 + 5862 6151 98380 289 chain 115558 chr22 51304566 + 27168116 27169791 SVA_F 1814 - 11 1272 32590 5 2 0 637 51 0 150 1 0 10 2 0 38 0 15 67 374 1 338 chain 4138 chr22 51304566 + 27168760 27168811 SVA_F 1814 - 829 893 107942 23 1 15 10 1 0 16 chain 3481 chr22 51304566 + 27169079 27169116 SVA_F 1814 - 884 921 193296 37 chain 12503 chr22 51304566 + 27169184 27169321 SVA_F 1814 - 698 835 150230 137 chain 5410 chr22 51304566 + 27169326 27169387 SVA_F 1814 - 791 852 190893 61 chain 5938 chr22 51304566 + 27169388 27169453 SVA_F 1814 - 867 933 185805 10 0 1 55 chain 4957 chr22 51304566 + 27169855 27169912 LTR33B 472 - 21 78 195621 57 chain 4895 chr22 51304566 + 27182498 27182574 MADE1 96 + 4 96 196315 20 5 21 51 chain 5656 chr22 51304566 + 27183550 27183617 LTR39 781 - 669 736 188506 67 chain 8977 chr22 51304566 + 27215100 27215218 L1PA16 3655 - 181 301 165735 59 1 2 21 0 1 37 chain 5345 chr22 51304566 + 27228574 27228861 MLT1D 503 - 178 451 191596 23 211 197 53 chain 25909 chr22 51304566 + 27259392 27259703 L1PA7 6471 - 6 314 100381 7 3 0 301 chain 15937 chr22 51304566 + 27259705 27259887 L1PA7 6471 + 5946 6128 138560 182 chain 59205 chr22 51304566 + 27265653 27266318 L1PA4 6152 + 5494 6151 53282 385 8 0 272 chain 21487 chr22 51304566 + 27285103 27285358 AluSc 308 + 16 271 122191 255 chain 5812 chr22 51304566 + 27290477 27290548 MER74A 558 + 427 498 187025 71 chain 16493 chr22 51304566 + 27303168 27303397 MER2 342 - 24 253 136945 89 4 5 38 2 1 96 chain 6836 chr22 51304566 + 27305792 27305901 L1MB5 1630 + 1355 1462 178684 33 15 13 61 chain 4677 chr22 51304566 + 27366913 27366968 MLT1J 494 + 96 151 198790 55 chain 18347 chr22 51304566 + 27437169 27437383 AluY 311 + 82 294 131940 51 2 0 161 chain 13291 chr22 51304566 + 27445534 27445697 Tigger3d 321 + 28 191 147127 163 chain 6402 chr22 51304566 + 27508606 27508773 MER58A 224 + 47 212 182010 72 71 70 19 1 0 4 chain 6500 chr22 51304566 + 27627065 27627146 MER58A 224 - 143 224 181242 81 chain 30230 chr22 51304566 + 27629033 27629415 L1PA7 6471 - 2335 2717 83881 133 0 1 132 11 10 106 chain 191744 chr22 51304566 + 27629415 27631754 L1PA7 6471 + 4137 6469 19890 83 29 8 78 0 5 477 6 0 3 5 0 453 1 0 146 1 7 188 0 11 25 0 3 79 0 1 352 3 5 398 2 0 10 chain 3088 chr22 51304566 + 27673430 27673465 MIR 256 + 111 146 223126 35 chain 15791 chr22 51304566 + 27686271 27686678 L1PB1 5432 - 8 379 138978 4 1 0 16 1 0 13 1 0 21 1 0 5 80 65 4 1 0 16 1 0 43 23 20 45 5 3 11 16 11 13 1 0 19 5 0 10 1 2 50 chain 2856 chr22 51304566 + 27698667 27698697 MIRb 242 + 103 133 227733 30 chain 11329 chr22 51304566 + 27742594 27742810 Tigger3a 397 + 139 335 154970 9 0 10 91 16 12 48 34 8 18 chain 18162 chr22 51304566 + 27750646 27751011 THE1B 368 - 0 352 132435 55 19 0 64 13 21 14 40 39 6 1 0 34 30 30 89 chain 213280 chr22 51304566 + 27769034 27771706 L1P2 5180 + 17 2715 18274 111 0 1 16 6 5 23 32 31 43 1 0 267 0 1 48 1 0 224 1 0 6 1 0 31 9 13 267 1 2 49 0 1 64 0 1 23 1 0 4 0 1 199 4 13 129 0 3 289 0 10 81 1 2 337 0 1 6 1 0 396 chain 72718 chr22 51304566 + 27771706 27772547 L1PA6 6164 + 5315 6160 47157 730 0 4 111 chain 3488 chr22 51304566 + 27801490 27801534 MIR 256 + 166 210 215540 44 chain 24187 chr22 51304566 + 27893658 27893945 L1PA5 6144 - 5 292 109289 287 chain 4010 chr22 51304566 + 27938610 27938659 MER20 218 - 64 113 207229 49 chain 5794 chr22 51304566 + 27971494 27971563 MIRb 242 - 106 175 187210 69 chain 4803 chr22 51304566 + 28006256 28006307 L1PA3long 6157 - 358 409 197334 51 chain 31337 chr22 51304566 + 28006307 28006650 L1PA3long 6157 + 5799 6142 81918 343 chain 11181 chr22 51304566 + 28083667 28083840 MER30 238 - 15 201 155509 7 0 1 15 10 8 65 5 19 71 chain 21403 chr22 51304566 + 28101773 28102146 THE1D 372 - 0 369 122499 147 1 0 15 40 45 62 28 29 21 9 0 50 chain 10068 chr22 51304566 + 28138294 28138399 LTR7 482 + 377 482 160227 105 chain 169634 chr22 51304566 + 28138420 28140525 HERVH-int 3825 + 0 2123 22099 27 2 0 461 2 0 12 39 31 39 1 0 9 2 1 24 30 0 15 0 37 42 2 1 57 0 2 5 1 2 13 0 3 344 0 4 94 15 0 379 0 4 79 4 31 53 1 0 306 0 1 47 chain 3011 chr22 51304566 + 28138924 28138963 HERVH-int 3825 + 438 475 209462 31 2 0 6 chain 41611 chr22 51304566 + 28140670 28141116 LTR7 482 + 0 446 67138 446 chain 3475 chr22 51304566 + 28160891 28160928 MER58A 224 + 45 82 215738 37 chain 4814 chr22 51304566 + 28161021 28161078 MLT2B4 540 - 483 540 197191 57 chain 3452 chr22 51304566 + 28189338 28189377 U3 216 + 0 39 216164 39 chain 3334 chr22 51304566 + 28229022 28229061 MADE1 96 + 0 40 218333 5 0 1 34 chain 24492 chr22 51304566 + 28232738 28233023 AluSc5 308 - 23 308 107584 285 chain 45054 chr22 51304566 + 28320153 28320805 HSMAR1 1287 + 0 1281 62990 75 6 0 47 8 3 34 0 5 202 26 661 49 0 1 18 1 0 186 chain 36742 chr22 51304566 + 28323931 28324438 MER75 514 - 0 514 73893 8 0 4 14 4 0 68 0 4 119 1 5 161 12 11 120 chain 31434 chr22 51304566 + 28329086 28329536 LTR71A 459 - 0 458 81758 75 8 9 21 26 29 124 0 1 96 0 3 100 chain 4031 chr22 51304566 + 28354134 28354186 THE1C 375 + 2 60 206914 45 0 6 7 chain 334188 chr22 51304566 + 28431809 28435665 L1PA5 6144 + 2314 6141 12047 82 1 0 3 1 0 119 3 1 196 40 13 578 2 1 152 0 3 2679 chain 257855 chr22 51304566 + 28435665 28438708 L1PA6 6164 + 3090 6147 15782 124 1 4 109 2 1 576 0 2 462 0 4 943 1 5 506 1 0 49 0 1 36 1 0 174 4 7 54 chain 22498 chr22 51304566 + 28440440 28440698 L1PA4 6152 - 0 256 118033 23 2 0 233 chain 154877 chr22 51304566 + 28456088 28458026 L1PA4 6152 - 1 1821 23994 112 0 1 153 6 7 334 128 5 238 1 0 18 1 5 947 chain 49130 chr22 51304566 + 28467198 28467734 L1PA2 6032 + 5497 6032 59648 383 1 0 152 chain 542833 chr22 51304566 + 28479519 28485662 L1PA3long 6157 + 4 6157 2368 574 0 1 124 1 0 4 6 14 1731 1 0 805 0 3 2897 chain 34216 chr22 51304566 + 28485729 28486113 L1PA4 6152 + 5768 6152 77329 384 chain 28192 chr22 51304566 + 28495175 28495538 LTR18A 364 + 0 364 92338 11 1 0 249 1 3 101 chain 127873 chr22 51304566 + 28529236 28530784 L1P1 4361 + 4 1578 28602 111 6 20 748 0 1 341 1 2 51 0 10 290 chain 12928 chr22 51304566 + 28545006 28545186 Tigger3 1187 - 31 208 148516 27 1 0 41 5 3 106 chain 175420 chr22 51304566 + 28552773 28555361 L1MA2 4263 + 1245 3880 21405 30 5 12 79 0 1 40 0 1 4 1 4 20 7 0 7 0 6 9 0 3 21 0 1 110 7 0 52 11 10 88 31 33 54 0 4 39 20 23 51 0 4 12 0 8 118 9 8 62 1 16 51 0 3 16 6 5 66 2 1 222 7 4 13 6 10 76 1 0 260 0 1 83 11 7 52 7 8 106 1 2 119 1 0 279 0 1 6 1 0 18 5 1 67 15 30 114 13 10 47 6 4 23 chain 539180 chr22 51304566 + 28559671 28565818 L1PA4 6152 + 11 6151 2955 116 0 14 868 0 1 135 35 0 1290 0 4 109 0 1 235 0 2 422 0 1 307 1 0 166 0 2 196 0 1 1810 0 2 132 0 1 168 2 0 6 0 2 149 chain 517072 chr22 51304566 + 28587311 28593425 L1PA4 6152 + 20 6152 5477 1144 35 26 19 0 6 225 0 1 9 5 6 4 1 0 219 0 1 77 0 1 83 0 4 49 1 0 868 0 1 21 0 4 498 1 0 147 7 5 244 0 4 268 3 0 1043 1 0 438 0 18 554 6 1 144 chain 4080 chr22 51304566 + 28595715 28595759 MER20 218 - 77 121 206188 44 chain 509908 chr22 51304566 + 28605174 28611271 L1PA5 6144 + 7 6135 6173 86 23 31 10 11 25 393 1 0 63 0 1 75 7 0 6 0 7 465 9 0 33 0 6 235 5 6 4 1 0 154 0 1 63 0 1 78 0 1 86 0 4 473 0 1 196 6 7 237 0 1 21 0 4 645 7 5 244 0 4 268 3 0 1043 1 0 1145 chain 4189 chr22 51304566 + 28635254 28635304 MER3 215 + 53 103 204707 50 chain 227934 chr22 51304566 + 28707866 28710603 L1P2 5180 + 2165 4897 17422 7 2 0 147 6 0 35 1 0 221 1 5 1079 0 1 26 1 0 288 5 6 613 7 6 298 chain 6315 chr22 51304566 + 28710603 28710675 L1P3 4156 - 4084 4156 179936 72 chain 22545 chr22 51304566 + 28720283 28720565 L1P3 4156 + 3863 4139 117822 133 2 0 28 1 0 83 2 0 9 1 0 23 chain 40975 chr22 51304566 + 28720903 28721385 L1P1 4361 - 655 1139 67942 4 0 1 151 0 1 327 chain 531117 chr22 51304566 + 28729849 28736021 L1PA4 6152 - 9 6146 4067 837 1 5 120 16 10 678 0 17 799 5 7 11 1 0 303 1 0 1598 0 1 195 0 1 413 35 0 295 22 5 842 chain 14963 chr22 51304566 + 28750814 28750975 L1PA2 6032 - 4 165 141439 161 chain 25580 chr22 51304566 + 28758109 28758451 THE1B 368 + 2 356 101826 42 14 29 96 1 0 23 2 0 164 chain 40372 chr22 51304566 + 28758463 28758950 THE1B-int 1605 + 0 512 68776 430 1 26 56 chain 27145 chr22 51304566 + 28760076 28760430 THE1B 368 + 2 368 95779 42 0 15 110 6 5 18 2 0 176 chain 21459 chr22 51304566 + 28767586 28767856 AluSg7 307 - 13 296 122300 43 4 16 108 0 1 115 chain 29114 chr22 51304566 + 28781982 28782287 AluYa8 305 + 0 305 88486 305 chain 541544 chr22 51304566 + 28782835 28788857 L1PA3long 6157 - 2 6156 2583 147 0 1 10 1 0 1639 0 4 2303 0 2 1145 8 136 615 0 1 144 3 0 7 chain 40595 chr22 51304566 + 28859296 28859767 L1PA5 6144 + 5529 6001 68448 290 0 1 181 chain 12277 chr22 51304566 + 28859767 28859903 L1PA5 6144 + 6002 6138 151086 136 chain 33833 chr22 51304566 + 28885806 28886246 MLT2A1 477 - 0 477 77885 6 0 4 33 6 0 6 3 43 71 0 1 143 4 1 37 1 2 130 chain 94899 chr22 51304566 + 28887199 28888251 L1PA4 6152 + 5092 6143 38124 910 1 0 141 chain 341124 chr22 51304566 + 28902873 28908346 L1PA11 4918 + 3 4578 11866 36 8 6 40 4 1 29 1 0 5 0 1 6 2 0 53 1 0 31 8 5 58 0 3 60 4 0 92 0 1 54 0 4 176 0 1 376 0 1 178 0 1 46 0 7 106 326 0 35 2 0 77 0 1 60 7 0 50 0 4 88 312 0 117 1 2 36 0 6 358 3 0 18 0 1 7 6 8 13 0 1 19 0 7 29 4 3 97 3 0 153 1 0 142 10 21 8 0 1 352 0 1 35 0 12 431 1 0 486 303 0 34 3 0 52 15 31 137 0 5 10 5 0 67 1 0 12 2 0 59 8 6 16 1 0 5 0 1 4 1 0 10 26 31 9 1 2 4 1 0 13 2 0 11 chain 28650 chr22 51304566 + 28912428 28912755 L1PA6 6164 + 5835 6162 90521 327 chain 8297 chr22 51304566 + 28913171 28913261 L1PA6 6164 - 227 317 169417 90 chain 23434 chr22 51304566 + 28920190 28920466 AluY 311 + 27 301 113450 104 2 0 170 chain 521640 chr22 51304566 + 28924935 28931063 L1PA5 6144 + 0 6142 4999 52 10 13 55 1 15 186 0 3 352 0 3 203 0 1 259 0 1 26 9 0 385 0 1 408 0 1 1216 4 7 183 0 1 4 1 0 633 0 1 284 2 1 334 1 0 643 2 1 22 1 0 517 0 1 226 0 3 70 4 0 24 4 0 7 chain 197292 chr22 51304566 + 28946814 28951814 L1PB1 5432 + 1581 5422 19403 26 1 0 276 0 830 82 0 1 46 1 0 161 6 5 116 0 1 18 1 3 560 15 18 8 4 0 230 6 7 38 3 4 41 0 1 276 2191 217 4 1 0 78 0 1 165 0 8 192 2 3 106 14 11 24 1 0 6 1 0 12 18 12 52 2 1 16 1 0 45 1 0 12 25 14 18 21 23 16 1 0 5 1 0 22 2 1 11 1 0 18 chain 145545 chr22 51304566 + 28948738 28950375 SVA_D 2077 + 0 2076 25247 12 2 0 553 0 1 342 0 85 9 1 0 32 1 4 15 12 365 658 chain 11062 chr22 51304566 + 28981823 28981976 L1PA7 6471 + 6318 6470 155956 133 8 7 12 chain 31413 chr22 51304566 + 29007495 29007835 L1HS 6032 - 0 340 81788 340 chain 325676 chr22 51304566 + 29007835 29011941 L1PA6 6164 + 1933 6160 12359 14 1 2 53 0 80 60 0 5 178 0 1 114 0 1 272 7 0 182 0 1 139 18 18 124 8 8 4 0 1 51 1 0 82 11 46 493 0 5 159 1 2 650 0 1 512 1 0 76 3 0 48 1 0 243 1 2 221 0 4 132 50 51 80 5 8 5 3 0 6 1 0 87 3 0 6 chain 17491 chr22 51304566 + 29020167 29020377 AluY 311 + 83 294 134287 49 0 1 161 chain 25026 chr22 51304566 + 29031031 29031320 AluY 311 + 4 294 104654 128 0 1 161 chain 24222 chr22 51304566 + 29040855 29041142 AluY 311 + 4 294 109076 128 0 1 118 0 2 41 chain 24328 chr22 51304566 + 29051574 29051862 AluYc 301 + 0 295 108502 24 0 5 90 1 3 173 chain 13000 chr22 51304566 + 29052741 29052893 L1PA5 6144 + 5974 6132 148252 104 0 6 48 chain 568228 chr22 51304566 + 29059271 29065303 L1HS 6032 + 0 6032 18 6032 chain 4278 chr22 51304566 + 29071969 29072085 L1MB7 1623 + 1311 1420 203486 13 47 41 5 1 0 50 chain 3555 chr22 51304566 + 29109251 29109298 L1MB5 1630 + 580 625 214437 34 2 0 11 chain 25647 chr22 51304566 + 29117269 29117574 AluSq10 312 - 7 312 101512 305 chain 27264 chr22 51304566 + 29125250 29125556 AluYf4 310 + 1 308 95388 57 0 1 249 chain 6188 chr22 51304566 + 29131505 29131582 MER47A 366 + 104 181 183674 77 chain 24031 chr22 51304566 + 29135919 29136195 AluSc5 308 + 11 287 110162 276 chain 61723 chr22 51304566 + 29157175 29157938 LTR17 781 + 0 781 52026 121 0 9 35 0 1 138 10 0 23 0 1 40 0 6 18 9 19 362 0 1 7 chain 5000 chr22 51304566 + 29165168 29165571 LTR12_ 688 + 70 392 195140 27 6 22 23 309 212 38 chain 2901 chr22 51304566 + 29172080 29172115 HSMAR2 1300 + 1003 1038 227039 35 chain 29182 chr22 51304566 + 29177327 29177638 AluYa5 310 - 0 310 88139 184 1 0 126 chain 43452 chr22 51304566 + 29200955 29201786 MER9a1 513 - 0 513 64870 72 318 0 441 chain 22499 chr22 51304566 + 29216586 29216856 AluSp 311 + 11 281 118029 270 chain 23399 chr22 51304566 + 29234451 29234742 AluY 311 + 8 293 113648 118 7 0 33 0 1 133 chain 35578 chr22 51304566 + 29242701 29243282 LTR10E 629 + 0 629 75440 14 0 1 80 26 79 14 1 4 77 1 0 4 0 1 13 10 8 29 1 0 55 1 0 155 1 0 14 42 39 35 1 0 7 chain 24633 chr22 51304566 + 29257174 29257494 AluY 311 + 10 311 106810 122 0 1 144 21 1 33 chain 24886 chr22 51304566 + 29264401 29264762 THE1B 368 - 0 368 105434 24 0 3 99 33 35 7 0 3 28 1 0 169 chain 12011 chr22 51304566 + 29274950 29275109 L1PA3long 6157 + 5995 6157 152151 44 10 14 71 1 0 33 chain 25974 chr22 51304566 + 29288878 29289182 AluY 311 + 5 310 100122 121 0 1 183 chain 16762 chr22 51304566 + 29317898 29318187 Tigger4b 360 - 1 315 136221 46 1 17 73 0 2 81 16 39 8 0 1 21 31 14 12 chain 24391 chr22 51304566 + 29353892 29354184 AluY 311 + 1 291 108126 29 3 1 260 chain 4443 chr22 51304566 + 29369267 29369327 L1MB7 1623 - 683 742 201412 6 1 0 53 chain 21396 chr22 51304566 + 29401788 29402035 AluSp 311 + 47 295 122522 124 0 1 123 chain 10168 chr22 51304566 + 29416006 29416173 MER2 342 - 39 199 159760 52 3 2 53 0 1 6 1 0 23 14 8 15 chain 2947 chr22 51304566 + 29470791 29470822 MIRb 242 + 97 128 226150 31 chain 12981 chr22 51304566 + 29476990 29477134 L1PA4 6152 - 12 156 148307 144 chain 3860 chr22 51304566 + 29477447 29477511 MER53 195 - 129 195 209456 27 9 11 28 chain 17597 chr22 51304566 + 29497280 29497503 Tigger3b 1229 + 627 850 134007 223 chain 13382 chr22 51304566 + 29511154 29511409 L1PB1 5432 + 5188 5420 146776 32 2 1 15 1 0 45 1 0 15 3 0 6 16 6 19 8 5 14 2 0 24 1 0 6 1 2 13 1 0 13 1 0 16 chain 10697 chr22 51304566 + 29514879 29515047 MER21C 908 - 161 351 157429 45 9 23 5 1 0 82 2 11 24 chain 6274 chr22 51304566 + 29530001 29530079 U6 107 + 0 78 182976 78 chain 33230 chr22 51304566 + 29555931 29557824 L1PA16 3655 + 136 1386 78830 273 1412 769 31 20 20 157 chain 18737 chr22 51304566 + 29574638 29574930 MER44A 345 + 0 335 130863 18 52 92 76 0 3 146 chain 3167 chr22 51304566 + 29614413 29614449 MIRb 242 - 111 147 221602 36 chain 5125 chr22 51304566 + 29633870 29633930 LTR54 533 - 44 104 193826 60 chain 45580 chr22 51304566 + 29636324 29636905 LTR14B 630 + 0 630 62430 274 7 53 213 11 14 76 chain 20968 chr22 51304566 + 29644256 29644549 Tigger3b 1229 - 650 948 124043 6 0 2 98 5 6 27 0 4 93 1 0 44 6 5 13 chain 3362 chr22 51304566 + 29660587 29660627 MIRc 230 + 67 107 217804 40 chain 24113 chr22 51304566 + 29674535 29674834 AluY 311 + 4 300 109676 114 1 0 8 0 1 168 3 0 5 chain 22326 chr22 51304566 + 29705970 29706261 AluSp 311 + 0 311 118798 31 0 1 24 11 30 225 chain 24628 chr22 51304566 + 29753677 29753974 AluSc5 308 - 12 308 106842 94 1 0 202 chain 21819 chr22 51304566 + 29759367 29759651 AluSc 308 + 11 294 120945 111 0 1 8 1 0 132 5 4 27 chain 8216 chr22 51304566 + 29787200 29787302 MLT1B 390 - 62 164 169851 102 chain 29604 chr22 51304566 + 29801816 29802134 AluYb8 318 + 0 318 86200 318 chain 68572 chr22 51304566 + 29809267 29810141 HERVIP10FH-int 2884 - 1850 2735 49002 311 0 3 40 0 2 14 0 2 35 1 0 20 0 5 13 0 1 123 0 2 60 3 4 4 1 0 137 1 2 31 16 12 64 chain 14046 chr22 51304566 + 29894953 29895245 L1PB1 5432 - 8 274 144391 4 1 0 16 1 0 13 8 7 14 2 1 23 2 0 11 15 12 15 24 12 16 1 0 43 1 0 18 1 0 49 3 1 11 chain 24775 chr22 51304566 + 29909062 29909362 AluY 311 + 5 299 106024 127 0 1 33 7 0 133 chain 24269 chr22 51304566 + 29940999 29941319 THE1A 353 - 26 353 108857 129 1 0 88 1 0 83 5 14 13 chain 115158 chr22 51304566 + 29941319 29943838 THE1A-int 1579 - 0 1579 32730 202 0 13 211 4 0 98 7 6 46 0 2 63 7 12 149 0 1 166 0 1 41 10 0 85 726 82 103 6 7 19 0 3 82 307 0 187 chain 27151 chr22 51304566 + 29943838 29944192 THE1A 353 - 0 351 95754 75 1 0 76 1 0 92 1 0 108 chain 126685 chr22 51304566 + 29947789 29949226 SVA_C 1631 + 48 1614 28891 166 0 1 521 0 80 35 0 46 106 0 1 577 0 1 32 chain 9353 chr22 51304566 + 29978588 29978708 LTR8 732 - 606 724 163788 99 2 0 19 chain 24920 chr22 51304566 + 29988642 29988919 AluYf4 310 - 34 309 105226 10 2 0 265 chain 3085 chr22 51304566 + 29993585 29993620 LTR12C 1709 - 991 1026 223218 35 chain 3203 chr22 51304566 + 29993655 29993724 LTR12C 1709 - 705 811 165563 56 2 39 11 chain 13151 chr22 51304566 + 29993737 29993969 LTR12C 1709 - 623 781 147646 21 74 0 137 chain 2739 chr22 51304566 + 29993773 29993832 LTR12C 1709 - 905 963 165563 46 1 0 12 chain 8192 chr22 51304566 + 29994738 29994899 MER20 218 - 18 185 169993 60 49 55 52 chain 23706 chr22 51304566 + 29998663 29998936 AluSp 311 + 0 280 111999 71 0 7 202 chain 14679 chr22 51304566 + 30017458 30017663 AluJb 308 + 85 288 142330 134 15 13 56 chain 149540 chr22 51304566 + 30039281 30040962 SVA_D 2077 - 1 2073 24683 532 0 352 154 0 2 32 1 0 43 0 1 10 12 54 871 5 0 21 chain 21462 chr22 51304566 + 30062693 30062951 AluSp 311 + 11 268 122285 8 1 0 141 1 0 32 0 1 75 chain 24843 chr22 51304566 + 30093555 30093848 AluSp 311 - 13 305 105660 28 6 5 259 chain 22373 chr22 51304566 + 30145631 30146006 THE1D 372 + 0 372 118615 56 43 37 40 1 2 31 25 27 179 chain 5986 chr22 51304566 + 30154774 30154847 HY3 101 + 28 101 185374 73 chain 4802 chr22 51304566 + 30157597 30157654 MER1B 344 + 170 227 197337 57 chain 40232 chr22 51304566 + 30158321 30158847 MER1A 529 + 0 528 68980 259 0 1 137 1 4 56 18 16 55 chain 22647 chr22 51304566 + 30216640 30216921 AluSp 311 + 0 303 117341 19 1 0 109 0 28 128 5 0 19 chain 7267 chr22 51304566 + 30242692 30242810 MER20 218 + 33 166 175672 49 13 29 47 1 0 8 chain 3545 chr22 51304566 + 30250761 30250805 MSTB2 466 - 0 45 214619 36 0 1 8 chain 126068 chr22 51304566 + 30253577 30255007 SVA_D 2077 - 338 2075 29076 338 9 8 4 0 1 168 0 1 38 1 265 166 0 40 332 0 4 332 0 5 18 9 2 15 chain 56677 chr22 51304566 + 30291242 30292015 HSMAR1 1287 - 0 780 54735 323 0 4 37 5 7 247 1 2 84 19 21 5 2 0 50 chain 4771 chr22 51304566 + 30294801 30294857 L1PA16 3655 - 196 253 197678 13 0 1 43 chain 4959 chr22 51304566 + 30295627 30295682 U6 107 - 52 107 195585 55 chain 23092 chr22 51304566 + 30315950 30316231 AluSc 308 + 28 305 115183 227 1 0 42 3 0 8 chain 27847 chr22 51304566 + 30335769 30336498 LTR7B 505 + 0 494 93535 84 9 40 84 7 5 15 6 29 12 284 0 135 1 3 7 2 0 27 14 13 26 2 0 14 chain 24299 chr22 51304566 + 30335993 30336270 AluY 311 + 19 296 108663 277 chain 91354 chr22 51304566 + 30338088 30339163 MER11C 1089 - 16 1089 39173 232 9 0 242 6 7 134 0 3 401 0 3 51 chain 7407 chr22 51304566 + 30358763 30358882 L1MB8 1703 - 149 268 174729 30 2 1 27 5 6 55 chain 3431 chr22 51304566 + 30439550 30439589 Tigger4a 237 - 190 229 216558 39 chain 6742 chr22 51304566 + 30453486 30453566 L1M4c 1769 + 872 952 179373 80 chain 64503 chr22 51304566 + 30455748 30456458 SVA_C 1631 + 918 1631 50799 85 0 1 337 0 2 288 chain 127921 chr22 51304566 + 30462075 30463514 SVA_C 1631 + 0 1631 28591 16 0 22 549 0 39 226 4 0 46 0 133 310 0 2 288 chain 132883 chr22 51304566 + 30495974 30497575 L1PA8 5853 + 4245 5850 27449 742 1 0 20 0 2 553 1 0 40 10 7 72 1 0 6 2 1 52 2 1 19 1 0 35 0 11 44 chain 6875 chr22 51304566 + 30502829 30502996 MER5A 189 - 0 189 178394 58 34 56 14 26 26 35 chain 6871 chr22 51304566 + 30529481 30529559 L1PA7 6471 - 12 90 178425 78 chain 6296 chr22 51304566 + 30550647 30550759 L1MC4 1079 - 264 374 182832 17 1 0 4 6 7 21 1 0 57 1 0 4 chain 9039 chr22 51304566 + 30667460 30667584 L1MB7 1623 + 1048 1177 165384 39 5 0 50 0 10 30 chain 4252 chr22 51304566 + 30683768 30683863 MIRb 242 + 28 133 203849 29 35 45 31 chain 10121 chr22 51304566 + 30726032 30726182 MER30 238 - 0 171 159989 79 3 7 20 6 23 42 chain 25085 chr22 51304566 + 30726183 30726472 AluY 311 + 0 293 104380 12 0 3 117 0 1 160 chain 44479 chr22 51304566 + 30749325 30749820 LTR2C 499 + 0 499 63605 172 0 3 167 1 2 155 chain 8293 chr22 51304566 + 30785508 30785692 Tigger7 736 + 67 266 169447 84 64 79 36 chain 29912 chr22 51304566 + 30799710 30800028 AluYb8 318 + 0 318 85059 318 chain 5276 chr22 51304566 + 30804111 30804178 Charlie18a 321 - 198 265 192254 67 chain 5043 chr22 51304566 + 30832583 30832647 MER63D 473 + 38 102 194706 64 chain 52877 chr22 51304566 + 30833369 30834087 MER4A 717 - 0 717 57087 67 10 12 9 1 6 127 5 0 53 7 8 19 0 1 16 10 4 66 1 0 21 0 2 306 chain 632 chr22 51304566 + 30836533 30836650 MER41B 635 - 0 122 144675 48 33 38 36 chain 48606 chr22 51304566 + 30837046 30837696 LTR8 732 - 14 662 60031 45 0 2 125 0 15 6 18 0 363 0 6 4 7 0 82 chain 794 chr22 51304566 + 30838972 30839119 MER41B 635 - 463 611 144675 45 1 2 101 chain 9872 chr22 51304566 + 30848510 30848678 LTR45C 530 + 289 449 161224 10 1 0 47 3 0 5 5 8 70 13 6 14 chain 26525 chr22 51304566 + 30901978 30902276 AluY 311 + 0 296 97953 75 3 0 57 0 1 163 chain 5343 chr22 51304566 + 30954760 30954858 MER53 195 - 29 126 191615 34 2 0 8 2 0 10 6 8 31 0 1 5 chain 11762 chr22 51304566 + 30993331 30993555 LTR12C 1709 + 940 1086 153210 123 78 0 23 chain 6416 chr22 51304566 + 30993573 30993707 LTR12C 1709 + 703 1037 181901 64 43 243 27 chain 20167 chr22 51304566 + 30993864 30994095 AluYa5 310 - 10 236 126625 15 5 0 211 chain 138986 chr22 51304566 + 31026996 31028513 SVA_D 2077 - 0 2061 26307 199 0 5 419 0 538 42 0 1 857 chain 85051 chr22 51304566 + 31035063 31036127 MER11B 1079 - 15 1079 41497 298 6 0 171 29 27 6 1 0 197 0 3 48 0 4 46 3 0 39 0 5 157 4 4 59 chain 5786 chr22 51304566 + 31048652 31048721 MLT1F 544 - 250 319 187313 69 chain 28567 chr22 51304566 + 31071420 31071759 LTR14A 344 - 0 344 90888 208 0 5 131 chain 119679 chr22 51304566 + 31073680 31075358 HERVK14-int 1672 - 3 1671 31153 10 1 0 31 0 3 106 1 0 9 2 0 31 1 0 63 1 0 27 0 1 4 1 0 30 0 3 43 1 0 203 1 0 33 2 0 8 1 0 3 1 0 81 1 0 161 2 1 127 0 1 14 0 4 61 1 0 36 15 11 95 0 1 134 2 0 15 1 6 7 1 0 137 100 99 29 2 0 11 1 0 14 3 2 13 chain 27453 chr22 51304566 + 31075569 31075910 LTR14A 344 - 0 344 94807 73 0 3 28 5 6 25 2 1 208 chain 23415 chr22 51304566 + 31101298 31101572 AluSp 311 - 30 304 113565 274 chain 12078 chr22 51304566 + 31110220 31110386 L1MA5 2750 - 128 295 151874 10 1 0 50 1 0 13 1 4 90 chain 23333 chr22 51304566 + 31112754 31113401 L1MB2 1706 - 817 1270 114008 89 60 59 89 247 55 122 10 9 30 chain 4712 chr22 51304566 + 31120601 31120662 L1MC1 2226 - 386 447 198365 61 chain 33040 chr22 51304566 + 31122190 31122631 L1PA8 5853 + 5413 5852 79151 15 0 1 137 1 0 42 0 1 69 14 12 4 0 1 45 2 1 19 1 0 92 chain 3046 chr22 51304566 + 31125898 31125934 MLT1C 463 + 368 404 224092 36 chain 12722 chr22 51304566 + 31135640 31135800 LTR8 732 - 0 160 149361 160 chain 3726 chr22 51304566 + 31147641 31147682 MER4E1 777 + 736 777 211544 41 chain 21693 chr22 51304566 + 31152403 31152706 AluSx4 309 + 10 300 121419 27 6 0 240 1 3 12 9 0 8 chain 5654 chr22 51304566 + 31166380 31166444 THE1B 368 + 241 305 188530 64 chain 34394 chr22 51304566 + 31172824 31173220 THE1B-int 1605 + 1207 1605 77071 111 0 2 285 chain 105952 chr22 51304566 + 31234825 31236042 L1PA3long 6157 - 0 1211 35268 120 33 21 655 0 3 44 0 4 304 1 0 60 chain 12314 chr22 51304566 + 31236069 31236208 L1PA2 6032 + 5892 6031 150963 139 chain 9880 chr22 51304566 + 31241932 31242077 L1MB8 1703 - 315 471 161172 28 15 26 102 chain 19711 chr22 51304566 + 31250775 31251128 THE1C 375 - 11 373 128065 14 1 0 151 25 26 19 67 76 76 chain 28551 chr22 51304566 + 31254103 31254432 AluYb9 318 - 10 318 90956 14 21 0 294 chain 58505 chr22 51304566 + 31282034 31282792 MER4E1 777 - 19 777 53700 51 3 4 151 8 4 62 0 1 142 1 0 7 1 0 150 10 14 172 chain 44392 chr22 51304566 + 31282819 31283359 MER41A 554 - 0 554 63698 288 0 3 132 0 11 120 chain 35551 chr22 51304566 + 31314851 31315370 MER1A 529 + 0 529 75475 57 36 40 32 4 6 72 0 1 122 0 1 117 1 0 14 15 18 49 chain 5984 chr22 51304566 + 31385852 31385923 MER45A 178 - 29 100 185400 71 chain 145686 chr22 51304566 + 31406772 31408354 L1PA2 6032 + 4446 6032 25227 736 0 4 846 chain 13793 chr22 51304566 + 31418878 31419045 MER41B 635 - 0 167 145293 167 chain 77928 chr22 51304566 + 31422239 31423128 SVA_D 2077 + 0 898 44558 35 1 6 15 7 0 102 0 1 49 2 1 59 1 12 618 chain 74523 chr22 51304566 + 31423173 31424136 SVA_E 1901 + 669 1686 46255 33 6 46 17 50 41 6 1 0 5 1 0 21 1 0 89 4 0 53 48 0 78 0 1 82 1 0 14 0 78 453 chain 3084 chr22 51304566 + 31423230 31423279 SVA_E 1901 + 927 976 77834 49 chain 2064 chr22 51304566 + 31423473 31423494 SVA_E 1901 + 1119 1140 238058 21 chain 28593 chr22 51304566 + 31443695 31444047 THE1A 353 + 0 353 90770 111 1 0 88 2 3 110 1 2 39 chain 24518 chr22 51304566 + 31463230 31463522 AluSc 308 - 15 307 107450 292 chain 30792 chr22 51304566 + 31508525 31508958 LTR12 884 - 315 884 82879 114 1 0 10 22 5 40 0 22 40 0 1 131 0 132 49 1 0 25 chain 7446 chr22 51304566 + 31541958 31542054 L1MB8 1703 - 411 507 174463 10 1 0 4 0 1 81 chain 8798 chr22 51304566 + 31542090 31542186 L1PA3long 6157 - 1 97 166657 96 chain 28916 chr22 51304566 + 31542212 31542519 AluYk11 308 - 1 308 89392 307 chain 41166 chr22 51304566 + 31577530 31577994 L1PA5 6144 + 5674 6138 67686 464 chain 131467 chr22 51304566 + 31579368 31580930 SVA_B 1603 - 0 1603 27762 9 2 0 297 0 1 248 0 1 17 9 45 9 1 0 5 3 4 34 3 0 69 1 0 12 1 0 138 0 1 672 19 28 13 chain 23293 chr22 51304566 + 31613116 31613397 AluSg7 307 + 11 295 114236 69 0 1 41 3 5 168 chain 3020 chr22 51304566 + 31697435 31697467 HSMAR1 1287 - 1255 1287 224619 32 chain 5196 chr22 51304566 + 31713063 31713144 L1MC1 2226 + 1307 1387 193071 53 8 7 20 chain 13332 chr22 51304566 + 31726305 31726496 AluY 311 + 37 294 146967 95 0 1 15 18 83 63 chain 25369 chr22 51304566 + 31732815 31733106 AluY 311 + 2 293 102832 291 chain 7465 chr22 51304566 + 31745370 31745544 L1MB5 1630 - 46 217 174370 27 18 17 29 45 43 55 chain 3685 chr22 51304566 + 31746287 31746328 MIR3 191 - 77 118 212152 41 chain 33886 chr22 51304566 + 31758080 31758872 MER4A 717 - 0 526 77799 10 1 0 169 1 2 73 319 0 53 0 40 97 7 19 38 0 1 24 chain 21491 chr22 51304566 + 31758915 31759165 AluY 311 + 10 260 122175 250 chain 24389 chr22 51304566 + 31779363 31779670 AluY 311 + 0 302 108141 47 7 1 83 1 2 169 chain 99392 chr22 51304566 + 31779688 31784698 L1PREC2 3366 - 363 3067 36928 32 22 8 11 4 0 7 3 4 10 0 1 8 75 56 12 4 0 4 1 0 43 13 12 38 0 1 4 2 0 35 3 0 101 2 1 124 1645 1019 102 615 0 30 0 4 26 0 3 13 17 1 87 0 6 40 1081 33 39 0 1 133 0 16 309 0 8 83 0 1 51 12 16 65 1 0 26 1 2 6 1 0 7 42 45 20 chain 8527 chr22 51304566 + 31783452 31783561 L1PREC2 3366 + 527 637 168157 10 0 1 99 chain 8102 chr22 51304566 + 31784718 31784823 U6 107 - 0 107 170476 28 1 3 76 chain 3407 chr22 51304566 + 31790337 31790374 LTR12 884 + 824 861 216958 37 chain 22150 chr22 51304566 + 31806171 31806439 AluSx4 309 + 11 280 119589 264 0 1 4 chain 20946 chr22 51304566 + 31856655 31856905 AluY 311 + 5 257 124124 126 1 2 76 0 1 47 chain 9147 chr22 51304566 + 31875370 31875474 U6 107 - 2 106 164821 104 chain 21527 chr22 51304566 + 31880550 31880822 AluSp 311 + 13 286 122054 115 1 0 80 0 2 76 chain 25375 chr22 51304566 + 31894299 31897142 Tigger1 2417 + 1473 2281 102807 84 0 6 22 1051 238 136 0 1 80 27 25 21 1362 135 29 1 0 6 1 0 4 0 2 19 chain 157686 chr22 51304566 + 31986975 31989957 SVA_F 1814 - 26 1801 23636 574 407 0 252 0 15 42 78 0 7 1 0 43 1 0 6 759 24 812 chain 2573 chr22 51304566 + 31987550 31987576 SVA_F 1814 - 777 803 232195 26 chain 6139 chr22 51304566 + 31987577 31987727 SVA_F 1814 - 627 776 82334 10 1 0 139 chain 9420 chr22 51304566 + 31987766 31987862 SVA_F 1814 - 686 782 163460 96 chain 848 chr22 51304566 + 31987884 31987939 SVA_F 1814 - 867 921 194857 10 1 0 44 chain 3029 chr22 51304566 + 31988254 31988328 SVA_F 1814 - 1082 1155 82334 69 4 3 1 chain 2710 chr22 51304566 + 31988387 31988415 SVA_F 1814 - 868 896 184441 28 chain 28761 chr22 51304566 + 31988524 31988832 SVA_F 1814 - 540 848 90064 308 chain 9207 chr22 51304566 + 31988832 31989047 SVA_F 1814 - 672 710 142434 4 177 0 34 chain 12283 chr22 51304566 + 31988837 31988969 SVA_F 1814 - 676 808 151069 132 chain 2216 chr22 51304566 + 31988986 31989013 SVA_F 1814 - 600 627 166757 27 chain 3775 chr22 51304566 + 31989047 31989093 SVA_F 1814 - 661 707 166757 21 1 0 10 0 1 14 chain 23986 chr22 51304566 + 32029421 32029705 AluY 311 + 2 288 110403 127 1 2 145 0 1 11 chain 7039 chr22 51304566 + 32040707 32040827 Tigger4b 360 + 3 150 177187 32 4 21 25 1 0 34 5 16 19 chain 22081 chr22 51304566 + 32047489 32047743 AluSp 311 + 37 291 119882 254 chain 24237 chr22 51304566 + 32068614 32068901 AluSp 311 - 23 311 109011 233 1 2 53 chain 24699 chr22 51304566 + 32083747 32084030 AluYc3 301 + 0 288 106444 113 1 2 142 0 4 27 chain 24932 chr22 51304566 + 32090460 32090767 AluY 311 + 9 309 105146 120 4 0 173 3 0 7 chain 24094 chr22 51304566 + 32096550 32096839 AluSp 311 - 20 311 109770 224 1 3 64 chain 2512 chr22 51304566 + 32183980 32184065 L1MA3 4352 + 4268 4322 232983 13 9 7 23 29 0 11 chain 24523 chr22 51304566 + 32191720 32192015 AluSp 311 - 16 311 107421 295 chain 24014 chr22 51304566 + 32206750 32207049 AluSp 311 - 6 300 110246 6 5 0 288 chain 22929 chr22 51304566 + 32225240 32225533 AluSq2 311 + 5 294 115969 126 1 2 151 5 0 10 chain 26658 chr22 51304566 + 32243365 32243736 THE1C 375 - 0 375 97461 25 1 0 142 22 23 39 0 4 142 chain 16223 chr22 51304566 + 32245260 32245484 THE1C 375 - 0 222 137687 25 1 0 155 8 10 6 3 0 26 chain 5646 chr22 51304566 + 32263570 32263715 MER58A 224 + 50 194 188606 22 63 62 60 chain 18057 chr22 51304566 + 32309367 32309591 AluY 311 + 74 297 132702 59 1 0 164 chain 23791 chr22 51304566 + 32324432 32324722 AluSg 306 + 16 306 111521 290 chain 31183 chr22 51304566 + 32326818 32327221 MLT2A1 477 + 0 398 82191 168 5 2 12 0 1 20 0 1 181 4 0 13 chain 24039 chr22 51304566 + 32334890 32335196 AluSp 311 + 1 293 110121 90 0 3 187 17 0 12 chain 4998 chr22 51304566 + 32378514 32379568 L1MB5 1630 - 463 773 195152 39 968 224 47 chain 20633 chr22 51304566 + 32388605 32388839 L1PA4 6152 - 0 241 125182 149 0 7 85 chain 5792 chr22 51304566 + 32396200 32396303 L1PA8 5853 - 46 157 187238 15 4 3 29 1 0 19 2 1 20 0 11 13 chain 49007 chr22 51304566 + 32399308 32400048 L1PA6 6164 - 4 766 59743 142 0 2 8 1 6 361 21 34 44 29 40 18 26 24 61 17 10 12 chain 3276 chr22 51304566 + 32411642 32411682 MLT1E2 623 + 582 623 219432 25 0 1 15 chain 12885 chr22 51304566 + 32415764 32415927 L1MB3 1562 - 265 427 148684 96 1 0 66 chain 20026 chr22 51304566 + 32433542 32433946 L1PB1 5432 + 5046 5411 127059 57 7 0 11 1 0 24 1 0 4 5 4 12 5 1 9 2 0 52 2 1 15 1 0 44 1 0 15 30 18 14 2 0 4 1 0 15 2 0 24 1 0 14 11 10 10 1 0 7 chain 7690 chr22 51304566 + 32452341 32452483 MER53 195 + 0 122 172987 69 28 6 31 2 4 12 chain 302110 chr22 51304566 + 32487956 32491889 L1PB1 5432 - 11 4008 13315 17 1 0 13 1 0 21 1 0 23 3 1 15 1 0 4 2 0 19 25 12 15 1 0 45 1 0 15 2 1 50 18 13 11 1 0 8 1 0 24 1 0 11 10 5 254 0 2 35 16 18 7 0 3 13 32 167 119 0 5 335 1 0 148 1 0 261 37 0 72 0 2 230 1 0 121 0 3 470 1 0 341 3 0 115 0 1 700 12 4 248 chain 21034 chr22 51304566 + 32522667 32522966 AluSp 311 + 8 302 123791 55 1 0 169 19 19 45 4 0 6 chain 4335 chr22 51304566 + 32523255 32523307 MER41-int 2638 + 115 167 202780 52 chain 66629 chr22 51304566 + 32535181 32536563 HERVIP10FH-int 2884 + 149 1034 49816 64 16 12 31 8 10 129 1 0 4 1 2 187 0 1 11 0 12 15 1 0 35 0 2 14 0 2 40 0 3 50 514 0 261 chain 36332 chr22 51304566 + 32535802 32536302 LTR6B 557 - 10 557 74463 12 0 1 33 0 1 6 0 1 48 27 27 16 0 1 41 0 1 182 1 0 90 0 15 15 7 35 22 chain 74336 chr22 51304566 + 32542781 32543829 MER11C 1089 + 0 1063 46342 116 0 2 123 9 18 58 6 10 59 1 0 149 74 71 84 1 5 4 1 0 38 0 1 127 0 1 54 1 0 143 chain 19494 chr22 51304566 + 32564705 32564987 THE1D 372 - 69 372 128672 15 1 0 43 5 11 41 1 0 5 9 15 28 0 1 69 0 10 65 chain 2824 chr22 51304566 + 32588606 32588638 MER5A1 166 + 100 132 228408 32 chain 32632 chr22 51304566 + 32593402 32593813 L1PA5 6144 - 0 417 79792 80 12 18 319 chain 20547 chr22 51304566 + 32623652 32623950 AluSc 308 + 10 278 125476 76 0 1 125 33 1 44 1 0 6 0 2 13 chain 49300 chr22 51304566 + 32646490 32647105 L1PA8 5853 + 5242 5849 59516 322 2 0 44 2 0 70 2 1 9 1 0 52 3 2 18 1 0 89 chain 65241 chr22 51304566 + 32659404 32660184 L1PA7 6471 + 5678 6469 50445 567 0 1 14 0 3 8 6 13 185 chain 71270 chr22 51304566 + 32671232 32672033 L1PA4 6152 - 20 829 47816 127 1 8 396 0 1 277 chain 9376 chr22 51304566 + 32685283 32685463 THE1C 375 + 0 218 163681 15 2 0 32 32 39 27 3 4 61 0 32 8 chain 21510 chr22 51304566 + 32686082 32686395 L1PA8 5853 - 0 312 122105 93 1 0 19 2 1 61 1 0 61 18 25 11 4 0 18 1 0 23 chain 3826 chr22 51304566 + 32688532 32688577 MLT1A1 405 + 292 337 209992 45 chain 552203 chr22 51304566 + 32690652 32696666 L1PA2 6032 - 2 6024 1170 773 0 2 71 0 7 947 0 4 696 0 1 3139 4 0 133 1 0 245 1 0 4 chain 3891 chr22 51304566 + 32716675 32716724 L1MC2 1988 + 1940 1988 208997 6 1 0 42 chain 139697 chr22 51304566 + 32742303 32743852 L1PA4 6152 + 4600 6151 26187 44 0 1 142 0 1 1363 chain 30716 chr22 51304566 + 32748031 32748407 L1PA5 6144 + 5761 6143 83008 137 5 4 224 0 7 10 chain 22499 chr22 51304566 + 32767172 32767434 AluY 311 + 10 279 118028 116 0 1 31 0 6 115 chain 29062 chr22 51304566 + 32770543 32770872 L1PA7 6471 + 6140 6470 88708 175 0 1 154 chain 29031 chr22 51304566 + 32792811 32793206 LTR3B 427 + 0 423 88844 57 0 2 49 0 1 52 1 0 14 1 2 116 0 16 14 5 12 21 0 2 65 chain 16111 chr22 51304566 + 32794326 32794597 L1PA8 5853 + 5578 5852 138022 32 3 1 64 28 26 39 2 1 19 9 8 46 1 10 28 chain 3703 chr22 51304566 + 32796481 32796522 MER66B 489 - 152 193 211899 41 chain 4128 chr22 51304566 + 32822936 32822983 MER45A 178 + 131 178 205541 47 chain 21941 chr22 51304566 + 32823709 32823982 AluSc 308 + 16 288 120455 241 2 1 30 chain 23843 chr22 51304566 + 32847150 32847423 L1PA5 6144 - 288 561 111230 273 chain 22506 chr22 51304566 + 32847423 32847685 L1PA5 6144 + 5877 6135 118005 110 4 0 148 chain 23991 chr22 51304566 + 32868728 32869084 AluY 311 + 0 299 110376 63 0 3 54 55 8 157 13 0 14 chain 12298 chr22 51304566 + 32869093 32869259 LTR10C 591 + 396 564 151019 104 7 9 55 chain 6281 chr22 51304566 + 32872679 32872748 MER41B 635 - 82 151 182942 69 chain 23661 chr22 51304566 + 32896531 32896812 AluSc 308 - 14 295 112243 281 chain 30192 chr22 51304566 + 32898740 32899174 LTR7Y 441 + 0 441 84219 105 9 0 55 68 84 197 chain 286471 chr22 51304566 + 32899174 32902797 HERVH-int 3825 + 0 3825 14260 211 0 11 158 0 2 150 5 0 25 0 3 10 5 4 6 1 0 24 29 0 12 7 6 9 24 0 19 20 1 5 1 0 42 2 1 57 0 1 7 0 2 12 0 3 344 0 13 91 15 0 71 0 3 85 2 0 293 8 35 72 2 14 213 4 14 716 0 1 4 28 27 293 9 11 39 8 218 260 0 2 225 chain 28968 chr22 51304566 + 32904057 32904490 LTR7Y 441 + 0 441 89140 103 9 0 57 68 84 81 0 1 115 chain 20478 chr22 51304566 + 32950539 32950802 LTR10A 586 + 183 535 125691 14 0 87 177 0 1 51 0 1 21 chain 2821 chr22 51304566 + 32988139 32988226 MER20 218 - 22 109 228439 15 42 42 30 chain 11264 chr22 51304566 + 32991602 32991777 MSTA 426 + 0 199 155174 100 26 50 49 chain 18007 chr22 51304566 + 33002846 33003052 L1PA4 6152 - 0 205 132839 147 1 0 58 chain 5793 chr22 51304566 + 33015061 33015129 MER5A1 166 + 25 93 187234 68 chain 4791 chr22 51304566 + 33031095 33031149 5S 121 - 31 85 197445 54 chain 18445 chr22 51304566 + 33035245 33035487 L1PA16 3655 - 1063 1305 131656 88 1 0 60 0 2 5 2 0 51 0 1 35 chain 24214 chr22 51304566 + 33038413 33038713 AluYc3 301 - 4 301 109127 6 3 0 18 2 0 134 0 1 23 1 2 113 chain 34604 chr22 51304566 + 33051424 33051906 MER1A 529 + 45 521 76751 75 34 29 311 6 5 56 chain 6265 chr22 51304566 + 33077165 33077275 MER20 218 + 1 104 183050 19 1 0 8 7 8 43 7 0 25 chain 69068 chr22 51304566 + 33100928 33102231 L1PREC2 3366 - 151 1318 48776 19 246 156 30 6 4 31 26 12 11 4 1 22 10 8 16 57 44 7 3 0 4 1 0 44 1 0 54 2 0 368 10 6 59 1 0 271 chain 15994 chr22 51304566 + 33106671 33106890 MSTA 426 + 208 426 138366 30 15 14 174 chain 19787 chr22 51304566 + 33123621 33123912 L1PA11 4918 - 401 683 127855 9 4 0 20 1 0 13 2 0 67 1 3 11 2 1 64 3 0 94 chain 28070 chr22 51304566 + 33123925 33124262 L1PA11 4918 + 3869 4207 92754 33 1 2 303 chain 26624 chr22 51304566 + 33133308 33133613 L1PA4 6152 - 0 311 97576 6 0 5 137 0 1 162 chain 30517 chr22 51304566 + 33151837 33152216 L1PA7 6471 + 6090 6469 83389 222 1 2 140 5 4 11 chain 12144 chr22 51304566 + 33152275 33152410 L1PA4 6152 + 6008 6143 151634 135 chain 69772 chr22 51304566 + 33153090 33154291 HERVL-int 5654 + 4775 5654 48484 33 10 4 107 0 1 25 317 0 240 2 1 101 4 5 80 1 0 58 0 1 223 chain 29514 chr22 51304566 + 33154291 33154667 MLT2A1 477 + 0 383 86593 33 0 5 104 0 1 25 1 5 151 1 0 12 2 0 47 chain 24042 chr22 51304566 + 33165500 33165788 AluSp 311 - 10 297 110106 127 1 0 160 chain 29326 chr22 51304566 + 33166890 33167263 L1PA8 5853 - 0 366 87409 93 1 0 19 2 1 52 2 1 8 1 0 71 2 0 44 1 0 77 chain 3359 chr22 51304566 + 33262474 33262538 MIRb 242 + 50 137 217882 16 13 36 35 chain 21513 chr22 51304566 + 33280584 33280860 AluSc5 308 + 0 279 122090 28 2 1 47 1 3 193 0 2 5 chain 29273 chr22 51304566 + 33295772 33296080 AluYb8 318 + 0 308 87680 308 chain 51163 chr22 51304566 + 33302488 33303108 L1PA8 5853 - 0 613 58210 93 1 0 19 2 1 52 1 0 9 1 0 71 2 0 44 1 0 324 chain 14368 chr22 51304566 + 33311053 33311269 L1PA7 6471 + 6256 6468 143313 39 28 30 5 2 0 131 4 0 7 chain 21874 chr22 51304566 + 33326119 33326484 THE1B 368 + 0 368 120733 169 1 0 28 49 56 53 18 17 8 2 0 37 chain 12289 chr22 51304566 + 33328887 33329111 MLT1B 390 - 135 373 151045 45 21 29 37 21 23 58 0 5 37 1 0 4 chain 461934 chr22 51304566 + 33337457 33342683 L1PA5 6144 + 3 6141 8333 492 1 3 725 0 1 209 1 0 575 11 10 478 1 0 81 0 2 298 0 904 26 1 2 463 0 1 6 0 2 406 1 2 1307 0 1 144 chain 2984 chr22 51304566 + 33354592 33354627 MIR 256 - 18 53 225350 35 chain 22204 chr22 51304566 + 33360151 33360406 L1PA4 6152 + 5877 6143 119332 145 6 17 104 chain 23642 chr22 51304566 + 33373468 33373746 AluSc 308 + 20 300 112344 252 0 2 26 chain 122745 chr22 51304566 + 33399184 33400831 THE1C-int 1605 + 0 1605 30141 13 3 2 312 0 6 112 0 7 254 1 0 32 0 1 127 0 5 264 0 8 30 2 1 67 79 0 277 0 5 50 0 8 24 chain 19974 chr22 51304566 + 33400831 33401165 THE1C 375 + 0 339 127224 96 1 0 24 3 0 59 0 2 5 56 63 90 chain 12467 chr22 51304566 + 33419231 33419465 THE1B 368 + 70 307 150388 99 2 0 11 0 1 4 1 0 5 59 64 53 chain 24687 chr22 51304566 + 33424749 33425039 AluY 311 + 6 297 106511 126 1 2 163 chain 23433 chr22 51304566 + 33431865 33432290 LTR34 700 + 256 700 113461 13 37 45 18 54 65 27 1 2 111 1 0 163 chain 5145 chr22 51304566 + 33432975 33433131 MER34A1 583 + 395 535 193606 33 62 42 33 10 14 18 chain 8187 chr22 51304566 + 33455586 33455699 MSTD 398 + 0 149 170030 94 2 30 10 0 8 7 chain 6624 chr22 51304566 + 33477184 33477260 MLT1A 405 + 294 370 180275 76 chain 16716 chr22 51304566 + 33499722 33500072 THE1B 368 + 2 368 136351 75 0 11 20 14 15 54 71 76 44 23 22 49 chain 3767 chr22 51304566 + 33502784 33502830 MADE1 96 + 48 93 210855 13 1 0 32 chain 4099 chr22 51304566 + 33525481 33525526 L1PA6 6164 + 6115 6160 205957 45 chain 22611 chr22 51304566 + 33527421 33527784 THE1B 368 - 0 368 117537 128 1 0 10 56 61 16 1 2 151 chain 55340 chr22 51304566 + 33529169 33529838 L1PA7 6471 - 1 668 55496 4 1 0 8 0 2 140 2 3 489 4 0 21 chain 19211 chr22 51304566 + 33532172 33532532 THE1B 368 - 0 368 129498 56 7 6 56 14 22 14 47 45 53 7 8 11 6 8 89 chain 9745 chr22 51304566 + 33534730 33534848 THE1B-int 1605 + 1488 1605 161871 66 1 0 51 chain 23926 chr22 51304566 + 33534848 33535204 THE1B 368 + 0 368 110774 44 11 26 102 10 8 114 1 0 7 0 1 4 7 6 56 chain 7485 chr22 51304566 + 33535204 33535294 L1P5 443 - 332 422 174237 90 chain 39790 chr22 51304566 + 33536382 33536903 MLT2A2 560 + 0 545 69640 31 1 6 105 5 10 42 15 18 194 0 11 128 chain 3494 chr22 51304566 + 33546427 33546472 MLT1E2 623 - 455 500 215450 45 chain 21876 chr22 51304566 + 33550765 33551102 THE1B 368 + 0 348 120728 172 2 1 21 38 49 84 1 2 19 chain 60862 chr22 51304566 + 33557306 33558135 THE1C-int 1605 - 0 1589 52402 105 3 0 172 1 0 197 26 38 23 3 698 162 0 54 40 0 3 97 chain 119202 chr22 51304566 + 33566801 33568352 THE1D-int 1627 + 19 1588 31337 18 1 0 730 7 1 9 1 7 12 0 1 198 17 18 59 0 8 50 10 11 265 0 1 67 0 7 107 chain 377558 chr22 51304566 + 33568678 33573299 L1PA7 6471 + 1638 6465 10831 594 0 5 26 0 2 146 4 15 112 0 3 91 1 0 664 2 4 243 3 0 68 0 1 223 4 14 315 0 193 102 26 11 258 0 1 241 4 5 647 3 0 584 1 0 4 0 1 86 1 2 13 1 2 140 3 0 11 chain 48711 chr22 51304566 + 33604560 33605153 L1PA7 6471 - 1 595 59945 154 7 8 432 chain 21354 chr22 51304566 + 33622724 33622954 AluYk11 308 - 18 248 122673 230 chain 45329 chr22 51304566 + 33640916 33641612 HSMAR2 1300 - 4 721 62684 162 1 2 19 0 1 9 5 0 5 0 10 198 9 13 31 26 27 165 12 17 20 17 21 17 chain 21498 chr22 51304566 + 33654449 33654804 MER41C 542 + 0 542 122154 49 0 1 82 10 11 88 3 6 24 14 177 30 15 34 40 chain 25368 chr22 51304566 + 33665718 33666006 AluY 311 + 9 298 102837 123 0 1 165 chain 22633 chr22 51304566 + 33692543 33692833 AluSp 311 - 1 290 117410 92 6 0 6 1 7 73 1 0 111 chain 22877 chr22 51304566 + 33699620 33699901 AluSc5 308 - 23 301 116204 159 3 0 119 chain 21599 chr22 51304566 + 33714298 33714535 L1PA4 6152 - 201 438 121771 237 chain 16938 chr22 51304566 + 33714538 33714731 L1PA4 6152 + 5946 6139 135754 193 chain 23906 chr22 51304566 + 33728109 33728472 THE1B 368 + 0 368 110877 177 55 61 6 1 0 124 chain 3631 chr22 51304566 + 33734019 33734060 MIR 256 + 103 144 213120 41 chain 4817 chr22 51304566 + 33738985 33739050 MADE1 96 - 12 96 197152 29 0 19 36 chain 33333 chr22 51304566 + 33739794 33740216 MLT2A1 477 - 0 477 78682 40 4 0 9 0 44 98 0 10 102 1 5 26 0 1 142 chain 8122 chr22 51304566 + 33755866 33755990 LTR32 486 + 76 226 170370 76 17 43 31 chain 8148 chr22 51304566 + 33762665 33762795 THE1B 368 + 244 368 170241 63 20 14 47 chain 17769 chr22 51304566 + 33775251 33775467 L1PA5 6144 - 0 217 133515 144 5 6 67 chain 23548 chr22 51304566 + 33775467 33775737 L1PA5 6144 + 5662 5932 112864 270 chain 4398 chr22 51304566 + 33775872 33775924 MER21C 908 - 818 870 201962 52 chain 23703 chr22 51304566 + 33793098 33793388 AluSp 311 - 14 299 112016 6 5 0 279 chain 38397 chr22 51304566 + 33794976 33795508 L1PA8 5853 - 1 534 71576 23 0 8 61 1 0 19 2 1 39 0 1 6 1 2 7 4 0 6 3 2 67 0 1 4 4 1 25 0 1 5 10 9 245 chain 5793 chr22 51304566 + 33797779 33797865 MLT1B 390 + 307 390 187225 15 0 1 4 7 3 60 chain 22231 chr22 51304566 + 33806304 33806687 THE1D 372 + 0 366 119206 15 0 2 39 31 22 18 7 0 70 27 27 145 7 4 24 chain 16253 chr22 51304566 + 33818751 33818945 MSTA 426 - 231 426 137603 132 1 2 61 chain 24448 chr22 51304566 + 33824304 33824589 AluSg7 307 - 11 298 107819 43 0 1 52 0 1 190 chain 25411 chr22 51304566 + 33824627 33824945 AluY 311 + 1 307 102627 122 10 3 165 5 0 16 chain 7787 chr22 51304566 + 33847851 33847962 L1PB1 5432 - 155 264 172372 41 1 0 17 2 1 50 chain 15682 chr22 51304566 + 33857455 33857651 L1PA5 6144 + 5942 6144 139322 54 0 8 128 3 1 11 chain 19723 chr22 51304566 + 33864995 33865370 L1PA15 4387 + 3986 4348 128033 113 7 6 16 0 5 4 1 0 46 10 9 22 15 10 39 25 22 36 3 1 15 5 0 18 chain 14016 chr22 51304566 + 33878505 33878705 L1PA7 6471 + 6284 6470 144525 113 20 6 67 chain 22494 chr22 51304566 + 33899536 33899808 AluSg4 309 + 32 304 118052 272 chain 16668 chr22 51304566 + 33945751 33945979 L1PA6 6164 - 175 391 136489 118 12 1 41 1 0 56 chain 11827 chr22 51304566 + 33945989 33946128 L1PA6 6164 + 6012 6151 152916 139 chain 13385 chr22 51304566 + 33950973 33951257 MER2 342 + 17 306 146764 33 5 6 13 13 18 11 28 26 102 30 31 49 chain 8709 chr22 51304566 + 33963772 33963915 L1PB4 2604 - 32 174 167147 15 24 23 104 chain 14680 chr22 51304566 + 33970233 33970449 MER2 342 - 53 271 142325 39 6 7 115 0 3 15 1 2 28 3 0 9 chain 28741 chr22 51304566 + 33975080 33975435 THE1B 368 + 0 368 90166 44 0 15 113 1 0 122 1 0 74 chain 49709 chr22 51304566 + 33994370 33994955 L1PA7 6471 - 10 595 59228 585 chain 460308 chr22 51304566 + 34036832 34042581 L1PA8 5853 + 112 5849 8391 190 3 7 40 2 0 43 0 24 183 0 4 67 0 12 308 3 0 82 4 8 320 0 1 4 1 0 233 4 1 267 0 2 118 26 8 153 1 5 94 0 1 180 5 6 293 0 14 71 30 1 36 1 0 88 0 1 328 0 1 653 0 1 197 0 3 78 0 1 207 36 0 89 0 1 469 0 1 4 2 0 17 0 1 6 0 1 298 0 4 50 0 2 175 5 4 42 2 0 125 7 6 41 1 0 67 chain 9010 chr22 51304566 + 34057962 34058150 MER30 238 - 0 196 165541 84 73 81 31 chain 10342 chr22 51304566 + 34067723 34067846 MER85 139 + 5 138 158934 85 0 10 38 chain 3563 chr22 51304566 + 34097000 34097092 MER5A1 166 - 39 133 214271 31 38 40 23 chain 25238 chr22 51304566 + 34116044 34116424 MER1A 529 - 100 499 103549 188 11 25 17 10 18 85 22 19 47 chain 24384 chr22 51304566 + 34145110 34145399 AluSp 311 - 21 311 108171 228 0 1 61 chain 3411 chr22 51304566 + 34163636 34163678 LTR82B 718 + 184 226 216918 42 chain 22294 chr22 51304566 + 34188144 34188507 THE1C 375 + 0 363 118937 83 22 21 39 12 13 17 23 24 153 1 0 13 chain 42980 chr22 51304566 + 34191481 34191994 L1PA5 6144 + 5618 6144 65436 204 0 11 297 1 3 11 chain 27978 chr22 51304566 + 34196908 34197262 THE1A 353 + 0 353 93079 84 0 1 25 1 0 91 1 0 152 chain 27743 chr22 51304566 + 34230273 34230665 LTR7 482 + 0 477 93888 86 0 50 88 5 37 44 0 1 59 1 2 52 13 14 44 chain 81751 chr22 51304566 + 34242143 34243191 MER11C 1089 + 0 1063 42870 246 0 9 58 0 4 69 1 0 146 49 47 111 0 4 5 1 0 38 0 1 182 1 0 89 0 1 27 0 1 25 chain 5708 chr22 51304566 + 34253720 34253869 L1PA7 6471 + 5800 5949 55033 149 chain 64734 chr22 51304566 + 34253873 34254672 LTR17 781 - 0 781 50683 11 1 2 12 12 0 3 6 0 426 1 0 327 chain 19690 chr22 51304566 + 34254672 34255186 L1PA7 6471 + 5949 6468 55033 118 0 4 242 0 1 154 chain 6700 chr22 51304566 + 34262310 34262397 MER3 215 - 28 126 179684 24 0 11 63 chain 5610 chr22 51304566 + 34262521 34262590 MIR 256 + 74 144 188977 42 0 1 27 chain 3120 chr22 51304566 + 34272516 34272549 L1PA8 5853 + 5575 5608 222542 33 chain 5364 chr22 51304566 + 34272554 34272636 L1PA8 5853 + 5610 5691 191376 60 10 9 12 chain 11743 chr22 51304566 + 34272643 34272801 L1PA8 5853 + 5691 5847 153287 49 2 1 19 1 0 87 chain 6016 chr22 51304566 + 34297058 34297315 MLT1C 463 + 175 412 185083 15 24 0 9 57 71 25 66 56 61 chain 5301 chr22 51304566 + 34321949 34322019 MER5A1 166 - 31 100 192014 11 1 0 58 chain 33524 chr22 51304566 + 34329791 34330206 L1PA8 5853 + 5275 5686 78360 289 1 0 45 2 0 72 1 0 5 chain 10837 chr22 51304566 + 34330217 34330360 L1PA8 5853 + 5712 5853 156836 27 1 0 21 1 0 93 chain 11611 chr22 51304566 + 34337354 34337514 L1PA8 5853 - 5 163 153848 88 1 0 19 2 1 50 chain 14091 chr22 51304566 + 34337539 34337702 L1PA8 5853 + 5401 5564 144251 163 chain 26325 chr22 51304566 + 34345530 34345855 LTR17 781 - 455 781 98718 17 10 0 28 0 2 151 0 9 119 chain 4857 chr22 51304566 + 34346614 34346682 MSTA 426 + 156 222 196700 49 3 1 16 chain 2983 chr22 51304566 + 34356957 34356988 MLT1A1 405 + 288 319 225423 31 chain 6303 chr22 51304566 + 34360879 34360958 MER58A 224 - 13 92 182772 79 chain 23847 chr22 51304566 + 34374784 34375058 MER11D 897 + 617 891 111203 274 chain 22906 chr22 51304566 + 34389126 34389433 AluSc5 308 - 4 308 116088 29 25 22 253 chain 12680 chr22 51304566 + 34390934 34391190 THE1B 368 + 32 306 149535 26 11 25 86 1 0 6 63 68 63 chain 8741 chr22 51304566 + 34400481 34400583 L1PA7 6471 - 19 130 166969 9 0 9 93 chain 92058 chr22 51304566 + 34401448 34403828 THE1B-int 1605 - 11 1605 38953 345 17 23 49 2 1 357 1182 390 12 0 1 416 chain 44568 chr22 51304566 + 34402230 34402733 MER9a1 513 - 0 513 63511 34 0 9 456 0 1 13 chain 23042 chr22 51304566 + 34404843 34405133 AluSg7 307 - 4 296 115437 41 5 6 124 0 1 120 chain 22105 chr22 51304566 + 34436219 34436547 THE1C 375 - 11 361 119760 15 1 0 127 19 38 38 0 4 24 8 7 14 0 1 82 chain 46465 chr22 51304566 + 34476868 34477408 L1PA7 6471 - 4 543 61627 301 1 0 238 chain 6870 chr22 51304566 + 34488764 34488860 MLT1B 390 + 75 170 178431 9 4 0 58 0 3 25 chain 50193 chr22 51304566 + 34495627 34496208 LTR10C 591 + 2 591 58874 527 0 8 54 chain 21063 chr22 51304566 + 34508667 34508927 AluY 311 + 48 311 123680 22 0 3 238 chain 10958 chr22 51304566 + 34520122 34520252 L1PA7 6471 - 1 132 156367 49 0 1 81 chain 47273 chr22 51304566 + 34527524 34528080 MLT2A2 560 - 0 560 60986 8 0 4 217 1 0 4 0 1 326 chain 7632 chr22 51304566 + 34531024 34531194 MLT1B 390 - 51 219 173340 78 65 63 27 chain 25829 chr22 51304566 + 34583734 34584022 AluYg6 310 - 2 310 100752 45 0 22 115 2 0 126 chain 3452 chr22 51304566 + 34586715 34586895 MER53 195 + 8 195 216169 19 20 21 25 93 99 23 chain 24361 chr22 51304566 + 34615991 34616283 AluSq2 311 - 18 311 108313 159 0 1 133 chain 5312 chr22 51304566 + 34665118 34665185 MLT1A-int 1186 + 812 879 191910 67 chain 122442 chr22 51304566 + 34665527 34667104 THE1B-int 1605 - 0 1605 30236 23 0 8 221 5 0 320 1 0 4 0 1 382 1 2 125 1 0 63 3 28 428 chain 34700 chr22 51304566 + 34700734 34701158 MER41A 554 + 0 424 76625 424 chain 5083 chr22 51304566 + 34723432 34723490 Tigger7 736 + 37 95 194261 58 chain 21707 chr22 51304566 + 34741544 34741808 AluSc5 308 - 22 286 121364 264 chain 45830 chr22 51304566 + 34756411 34757053 L1PA8 5853 + 5195 5847 62196 144 9 18 160 1 3 19 0 1 20 1 0 45 11 13 64 1 0 8 1 0 50 2 1 19 2 1 42 1 2 42 chain 10698 chr22 51304566 + 34766183 34766404 L1PA13 3608 + 118 320 157427 20 3 0 26 2 1 12 3 0 24 44 34 56 2 0 29 chain 310967 chr22 51304566 + 34782362 34786119 L1PA7 6471 - 10 3775 12959 323 2 1 277 1 0 4 12 14 93 0 1 68 0 4 55 1 0 1133 0 1 244 16 20 278 2 0 380 12 16 52 3 0 801 chain 67103 chr22 51304566 + 34793942 34794690 L1PA4 6152 + 5389 6137 49617 748 chain 20766 chr22 51304566 + 34800507 34800748 L1PA5 6144 + 5892 6132 124726 67 1 0 173 chain 51100 chr22 51304566 + 34804353 34804934 L1PA4 6152 - 1 584 58250 4 0 1 400 2 3 175 chain 45705 chr22 51304566 + 34838710 34839314 THE1B-int 1605 + 963 1600 62309 128 7 15 11 8 6 161 2 29 287 chain 5312 chr22 51304566 + 34855546 34855625 MADE1 96 + 1 96 191903 41 3 19 35 chain 23720 chr22 51304566 + 34874122 34874458 THE1C 375 + 0 336 111935 186 0 1 16 0 3 5 21 23 13 8 2 87 chain 19671 chr22 51304566 + 34893661 34893912 L1MA8 2339 + 635 885 128195 170 1 0 80 chain 4367 chr22 51304566 + 34901239 34901291 L1P5 443 + 339 391 202354 52 chain 24385 chr22 51304566 + 34901513 34901988 L1PB1 5432 + 4970 5413 108165 24 2 3 106 1 2 10 3 0 19 1 0 13 27 20 49 6 5 16 1 0 43 1 0 15 1 0 5 2 0 13 47 33 24 1 0 21 1 0 13 1 0 9 chain 11297 chr22 51304566 + 34914125 34914259 MLT2A1 477 + 0 138 155069 13 0 3 103 0 1 18 chain 94937 chr22 51304566 + 34914288 34915426 HERVL-int 5654 - 3839 4991 38038 69 0 4 372 0 1 232 0 4 178 2 7 285 chain 131288 chr22 51304566 + 34915426 34917426 HERVL-int 5654 + 3767 5654 27801 74 8 6 184 338 0 331 0 8 157 8 0 34 0 221 90 0 1 19 5 6 599 5 9 148 chain 21293 chr22 51304566 + 34921243 34921616 THE1C 375 - 2 375 122888 24 1 0 158 5 6 32 16 0 7 1 21 11 0 1 29 40 37 34 2 0 13 chain 17844 chr22 51304566 + 34943675 34944034 L1PB1 5432 + 5105 5427 133258 12 3 0 21 2 0 9 1 0 7 9 5 8 2 0 53 2 1 15 1 0 45 1 0 15 14 1 30 2 0 5 1 0 7 0 3 5 10 5 18 1 0 21 1 0 13 1 0 19 1 0 4 chain 13808 chr22 51304566 + 34944091 34944294 L1PREC2 3366 + 1004 1213 145234 92 1 0 67 16 23 27 chain 552204 chr22 51304566 + 34945675 34951700 L1HS 6032 - 2 6031 1169 1667 0 2 2399 0 1 63 3 0 168 0 5 1655 2 1 68 chain 14367 chr22 51304566 + 34951993 34952275 L1PB1 5432 - 14 271 143319 14 1 0 13 1 0 21 1 0 24 2 0 14 8 5 19 40 27 44 1 0 16 2 1 53 2 0 6 chain 24237 chr22 51304566 + 34953051 34953357 L1P1 4361 - 1175 1480 109008 9 1 0 296 chain 148292 chr22 51304566 + 34954483 34956180 L1PA4 6152 - 0 1686 24847 1399 1 0 4 14 5 115 1 0 163 chain 8980 chr22 51304566 + 34958679 34958830 MER85 139 + 4 139 165713 92 32 16 27 chain 7443 chr22 51304566 + 34959121 34959214 L1PA16 3655 - 95 188 174494 93 chain 25013 chr22 51304566 + 34969463 34970007 L1PB1 5432 - 2 508 104719 4 1 0 11 1 0 11 1 0 12 1 0 22 1 0 19 32 25 18 40 27 45 1 0 15 2 1 52 2 0 7 10 6 11 1 0 10 1 0 14 46 42 138 0 1 15 chain 6331 chr22 51304566 + 34972125 34972207 LTR42 492 + 340 419 182530 13 3 0 66 chain 14044 chr22 51304566 + 34982976 34983171 L1MA5A 2387 - 358 557 144404 42 6 10 147 chain 2971 chr22 51304566 + 34989481 34989515 MLT1H 522 - 0 34 225658 34 chain 37102 chr22 51304566 + 34992707 34993154 L1PA6 6164 - 2 454 73380 153 0 7 42 2 0 250 chain 55510 chr22 51304566 + 35005673 35006422 Charlie3 2679 + 1702 2674 55409 182 1 0 231 0 1 14 36 267 206 21 13 58 chain 182736 chr22 51304566 + 35007605 35009663 L1PA4 6152 - 0 2068 20712 6 0 2 105 1 2 40 0 1 902 0 6 1004 chain 39489 chr22 51304566 + 35009663 35010115 L1PA4 6152 + 3631 4085 69926 113 1 3 338 chain 21812 chr22 51304566 + 35020008 35020311 AluSc 308 + 5 293 120968 112 0 1 31 4 3 131 15 0 10 chain 145182 chr22 51304566 + 35021272 35022965 SVA_D 2077 - 4 2022 25293 684 0 1 41 1 0 29 0 205 37 0 51 32 0 1 38 19 10 27 2 1 20 0 40 91 0 40 493 10 8 169 chain 8730 chr22 51304566 + 35024426 35024658 L1PB1 5432 - 23 232 167022 5 1 0 13 1 0 21 1 0 24 67 50 16 3 2 40 2 1 16 2 1 20 chain 57690 chr22 51304566 + 35063562 35064264 L1PA7 6471 - 16 720 54140 20 0 2 164 2 0 135 1 2 205 0 1 175 chain 549173 chr22 51304566 + 35073359 35079391 L1PA2 6032 - 0 6032 1555 265 0 1 1530 0 4 1657 0 1 1863 7 0 346 0 1 108 2 1 7 0 1 247 chain 138914 chr22 51304566 + 35079693 35081258 SVA_D 2077 - 11 2018 26325 610 1 0 17 0 403 82 1 38 526 0 3 328 chain 22350 chr22 51304566 + 35117763 35118038 AluSc 308 + 11 286 118700 275 chain 22780 chr22 51304566 + 35125014 35125342 L1PA8 5853 + 5526 5847 116678 31 6 5 46 2 0 71 1 0 9 1 0 46 14 13 13 2 1 86 chain 399372 chr22 51304566 + 35141631 35146200 L1PA4 6152 - 9 4591 10125 56 9 0 263 0 3 520 1 2 305 7 8 834 0 3 1054 1 2 244 9 17 440 0 3 187 0 2 639 chain 3064 chr22 51304566 + 35173456 35173492 THE1C-int 1605 + 174 210 223755 36 chain 102096 chr22 51304566 + 35175103 35176215 L1PA3long 6157 - 7 1134 36240 118 0 15 994 chain 24532 chr22 51304566 + 35181296 35181606 THE1B 368 + 0 306 107366 169 1 0 29 3 0 108 chain 528384 chr22 51304566 + 35184705 35190829 L1PA5 6144 + 0 6138 4365 43 0 1 485 9 11 895 12 12 386 1 6 279 0 1 1301 2 0 69 20 21 643 0 1 41 0 2 1100 0 4 52 2 0 4 0 1 780 chain 45298 chr22 51304566 + 35201182 35201799 L1PA8 5853 - 0 622 62722 40 0 4 49 1 0 19 2 1 48 16 14 69 2 0 45 1 0 42 0 1 4 0 2 10 0 1 34 0 4 19 0 1 115 1 0 100 chain 4033 chr22 51304566 + 35207467 35207533 MADE1 96 - 2 96 206880 22 7 35 37 chain 528209 chr22 51304566 + 35212790 35218914 L1PA5 6144 + 3 6134 4381 117 1 15 14 20 6 878 9 7 5 0 1 107 0 1 35 0 1 1157 1 0 99 2 0 730 1 0 19 1 3 1168 0 1 930 0 4 442 0 3 243 0 1 41 1 0 103 chain 24872 chr22 51304566 + 35230598 35231013 LTR7 482 + 0 482 105498 68 7 96 16 52 0 44 8 40 13 3 0 88 1 2 115 chain 255345 chr22 51304566 + 35231039 35234346 HERVH-int 3825 + 25 3825 15967 308 2 1 58 146 377 11 2 0 7 10 15 253 0 8 48 9 43 72 15 0 205 9 0 38 2 1 153 0 1 61 4 31 370 8 13 1021 9 219 486 chain 29834 chr22 51304566 + 35235599 35236015 LTR7 482 + 0 482 85335 68 9 47 109 0 1 24 2 0 17 0 31 31 3 0 37 1 2 115 chain 31757 chr22 51304566 + 35236711 35237155 LTR7 482 - 8 482 81238 10 0 2 29 13 14 31 0 2 92 0 31 148 21 15 100 chain 40484 chr22 51304566 + 35246223 35246797 MER41A 554 + 0 554 68616 87 5 6 82 12 5 109 25 8 81 2 0 90 0 5 81 chain 20566 chr22 51304566 + 35253456 35253744 L1PA7 6471 - 15 308 125410 99 0 1 44 1 0 4 1 2 47 0 3 42 7 8 43 chain 22178 chr22 51304566 + 35284784 35285170 THE1D 372 + 0 372 119454 54 18 0 20 16 17 72 41 45 16 1 0 148 chain 3820 chr22 51304566 + 35294873 35294921 MLT1H 522 + 111 159 210088 48 chain 6214 chr22 51304566 + 35301732 35301858 MER21B 843 + 705 820 183464 43 8 5 14 2 3 21 4 0 19 1 0 3 4 0 7 chain 34836 chr22 51304566 + 35312809 35313260 MER4A1 472 + 0 472 76426 71 1 2 174 4 24 190 0 1 6 1 0 4 chain 62941 chr22 51304566 + 35317328 35318168 L1PA8A 6298 + 5442 6290 51472 47 1 12 29 2 0 40 0 4 14 9 12 253 10 9 315 8 1 112 chain 11612 chr22 51304566 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35432398 35432469 MLT1A1 405 + 270 350 192614 13 3 12 55 chain 26606 chr22 51304566 + 35433852 35434196 THE1B 368 - 26 368 97634 48 1 0 117 0 1 4 2 0 172 chain 4248 chr22 51304566 + 35440838 35440883 LTR17 781 + 281 326 203892 45 chain 93548 chr22 51304566 + 35452776 35455892 L1PA15 4387 + 2926 4355 38495 109 0 1 132 2 0 238 7 8 30 1657 2 367 2 0 14 4 0 62 7 5 12 0 1 23 3 2 69 7 3 100 1 0 26 15 14 41 1 0 21 4 0 10 6 5 16 37 34 12 11 13 6 2 0 12 3 1 12 8 2 13 1 0 13 chain 17155 chr22 51304566 + 35460901 35461162 L1PA8 5853 + 5591 5847 135152 14 6 4 57 25 23 71 1 0 87 chain 4263 chr22 51304566 + 35494376 35494423 LTR37A 408 + 291 338 203718 47 chain 13378 chr22 51304566 + 35497740 35498234 MER30 238 - 1 212 146789 42 1 0 57 2 0 7 4 0 8 296 18 5 0 2 72 chain 21821 chr22 51304566 + 35525360 35525620 AluY 311 + 40 298 120938 90 2 0 168 chain 38834 chr22 51304566 + 35548213 35548765 LTR9B 643 - 72 638 70973 87 2 8 37 17 18 211 10 9 13 0 1 50 4 5 57 6 8 26 0 4 32 chain 22743 chr22 51304566 + 35560470 35561140 L1PA8 5853 - 6 340 116856 87 1 0 1 328 0 17 1 0 41 15 13 9 5 4 67 2 0 45 1 0 50 chain 375405 chr22 51304566 + 35561673 35566004 L1P1 4361 + 4 4341 10901 427 0 1 250 0 1 351 1 0 329 0 1 594 0 1 551 1 0 336 0 1 708 0 1 185 0 2 22 0 3 380 1 0 157 1 0 23 2 1 12 chain 10420 chr22 51304566 + 35575524 35575646 Tigger3a 397 - 64 186 158599 122 chain 48290 chr22 51304566 + 35577771 35578327 L1PA7 6471 + 5912 6468 60249 556 chain 23101 chr22 51304566 + 35596661 35597036 THE1B 368 + 0 368 115139 47 0 1 59 26 28 34 33 26 9 3 0 89 1 0 17 0 1 57 chain 47112 chr22 51304566 + 35630720 35631450 L1PA15 4387 - 71 811 61119 43 23 20 27 7 4 5 1 0 11 12 8 13 1 0 55 1 0 26 1 0 111 0 2 59 1 0 40 11 8 55 4 0 16 2 0 80 1 33 124 chain 308554 chr22 51304566 + 35633214 35637928 L1PBa1 4058 - 51 4048 13065 9 1 0 17 1 0 9 34 28 21 3 0 4 1 0 4 2 1 19 3 1 11 4 0 6 3 0 9 1 0 17 3 1 13 0 1 92 2 0 43 1 0 29 1 0 7 1 0 114 3 0 116 2 1 658 0 1 309 1 3 9 10 2 234 1 0 4 4 9 543 6 4 200 16 14 505 676 2 211 0 3 60 1 0 5 1 2 25 15 14 51 1 0 64 1 3 67 3 1 123 5 0 41 0 3 209 1 0 5 5 3 11 1 0 26 chain 48109 chr22 51304566 + 35636326 35636988 LTR12_ 688 + 0 680 60395 135 1 50 62 11 12 170 60 30 12 1 0 134 1 0 75 chain 5824 chr22 51304566 + 35639392 35639466 MLT2B2 565 - 464 543 186911 66 0 5 8 chain 43799 chr22 51304566 + 35640407 35640964 LTR10C 591 + 36 591 64452 102 0 4 188 0 1 87 14 7 166 chain 10464 chr22 51304566 + 35644893 35645042 Tigger3 1187 - 289 437 158418 95 9 8 45 chain 2829 chr22 51304566 + 35645778 35645808 U7 62 + 14 44 228220 30 chain 29427 chr22 51304566 + 35666138 35666573 MER1A 529 + 67 529 86946 137 8 39 167 11 10 4 0 1 19 20 16 69 chain 4657 chr22 51304566 + 35673101 35673203 MLT1E3 631 - 113 234 198996 38 32 51 32 chain 19728 chr22 51304566 + 35706274 35706554 AluSc 308 + 9 289 128018 171 4 0 9 20 23 45 8 9 23 chain 19194 chr22 51304566 + 35721423 35721644 MER75B 242 + 7 228 129543 221 chain 26877 chr22 51304566 + 35768499 35768801 AluYk4 311 + 0 302 96713 302 chain 2967 chr22 51304566 + 35792996 35793030 MER67A 545 - 11 45 225737 34 chain 11357 chr22 51304566 + 35823544 35823703 L1PA7 6471 - 3 163 154875 6 2 0 12 5 7 115 0 1 19 chain 23928 chr22 51304566 + 35836778 35837068 AluSp 311 + 10 302 110763 268 0 2 22 chain 13591 chr22 51304566 + 35862777 35862952 L1MA3 4352 - 260 439 146007 15 3 6 29 0 1 128 chain 24756 chr22 51304566 + 35862960 35863249 AluSc5 308 - 8 297 106136 289 chain 29523 chr22 51304566 + 35867703 35868065 THE1B 368 - 0 361 86551 198 1 0 163 chain 20074 chr22 51304566 + 35875660 35875937 LTR30 714 - 90 379 126902 163 7 18 50 7 8 50 chain 23746 chr22 51304566 + 35881805 35882086 AluSp 311 - 18 299 111798 281 chain 14187 chr22 51304566 + 35898371 35898533 AluYc 301 + 139 301 143928 162 chain 24278 chr22 51304566 + 35903417 35903751 LTR9 672 + 0 335 108786 196 1 0 6 20 21 49 0 1 62 chain 3921 chr22 51304566 + 35940822 35940867 MIR 256 + 88 133 208537 45 chain 32326 chr22 51304566 + 35991869 35992289 MER4D1 891 + 221 658 80312 52 0 2 32 1 0 147 0 11 135 4 9 49 chain 22625 chr22 51304566 + 36032514 36032801 AluSp 311 + 1 289 117455 137 6 7 144 chain 13062 chr22 51304566 + 36035774 36035926 L1PA4 6152 + 6001 6152 147978 4 1 0 147 chain 191363 chr22 51304566 + 36047508 36049614 L1PA4 6152 - 63 2171 19925 818 0 1 131 0 1 1157 chain 136421 chr22 51304566 + 36061205 36063367 MER4-int 2692 + 74 1969 26760 25 17 21 5 3 0 94 5 24 295 1 10 51 0 1 117 0 1 44 0 4 336 1 0 48 1 0 28 344 24 188 1 17 27 1 0 27 4 7 55 0 1 228 2 4 135 1 0 78 chain 40364 chr22 51304566 + 36064746 36065288 MER41A 554 + 0 554 68787 131 0 2 141 1 2 121 8 12 60 7 12 73 chain 145156 chr22 51304566 + 36067320 36069481 MER41-int 2638 + 450 2636 25301 6 0 4 70 5 3 10 0 2 5 7 9 26 2 0 5 1 3 63 16 5 15 1 0 51 0 2 73 7 21 89 0 2 26 9 3 131 21 24 120 0 1 69 40 36 37 0 1 299 1 2 5 1 0 170 16 15 22 2 0 36 2 0 284 5 6 18 5 22 113 12 10 12 1 2 27 0 5 42 0 1 58 0 1 25 2 1 98 chain 33446 chr22 51304566 + 36069490 36069913 MER41A 554 + 0 424 78497 87 5 6 331 chain 12176 chr22 51304566 + 36072586 36072743 MER4B 649 + 476 633 151511 86 1 0 17 0 1 53 chain 5990 chr22 51304566 + 36074701 36074793 MLT1E2 623 - 28 119 185334 71 7 6 14 chain 10067 chr22 51304566 + 36076845 36077044 L1MB3 1562 - 7 176 160234 31 1 0 55 1 0 27 52 24 32 chain 4096 chr22 51304566 + 36079392 36079441 Tigger2a 444 + 0 49 205999 49 chain 10821 chr22 51304566 + 36107358 36107505 L1MB3 1562 - 388 531 156900 81 4 0 62 chain 6014 chr22 51304566 + 36121183 36121269 LTR8 732 - 47 135 185093 27 0 4 6 2 0 51 chain 2582 chr22 51304566 + 36206836 36206900 L1MA10 1535 - 66 123 231910 27 23 16 14 chain 2813 chr22 51304566 + 36210947 36211037 MER2 342 - 233 321 228577 22 45 43 23 chain 8711 chr22 51304566 + 36284517 36284685 MSTB1 431 - 0 161 167136 92 26 23 16 14 10 20 chain 2938 chr22 51304566 + 36288262 36288293 MIRb 242 - 126 157 226355 31 chain 21818 chr22 51304566 + 36294896 36295170 AluSp 311 + 4 286 120953 68 1 9 20 0 1 30 1 0 154 chain 19892 chr22 51304566 + 36304363 36304651 MER47A 366 - 48 330 127511 204 0 12 11 25 7 48 chain 22439 chr22 51304566 + 36370461 36370745 AluSg 306 + 11 291 118302 26 4 0 254 chain 25643 chr22 51304566 + 36410166 36410457 AluYc3 301 - 9 301 101529 177 1 2 113 chain 143837 chr22 51304566 + 36415824 36417455 L1PA5 6144 + 4512 6144 25510 357 1 0 481 0 3 703 1 0 88 chain 42502 chr22 51304566 + 36435615 36436161 THE1C-int 1605 - 1046 1605 66011 107 0 7 110 0 6 244 0 1 65 7 6 13 chain 9024 chr22 51304566 + 36436868 36436977 THE1C 375 - 266 375 165474 109 chain 29062 chr22 51304566 + 36441725 36442028 AluYb9 318 - 15 318 88713 303 chain 18346 chr22 51304566 + 36455848 36456843 L1PB1 5432 + 5018 5427 131942 43 2 3 39 629 67 50 2 1 15 1 0 45 1 0 9 20 7 30 24 19 24 1 0 22 1 0 8 5 6 11 2 0 6 1 0 4 chain 25042 chr22 51304566 + 36457264 36457552 AluY 311 + 17 305 104583 288 chain 8141 chr22 51304566 + 36469589 36469690 L1MB5 1630 + 855 956 170285 101 chain 24890 chr22 51304566 + 36472462 36473133 THE1B 368 + 0 368 105409 44 14 29 63 6 1 32 1 0 23 4 0 119 5 0 15 303 0 42 chain 25631 chr22 51304566 + 36481373 36481679 AluSc5 308 - 0 308 101579 72 0 2 234 chain 12614 chr22 51304566 + 36485417 36485562 L1PA7 6471 - 7 152 149790 145 chain 51940 chr22 51304566 + 36485827 36486402 L1P1 4361 - 33 606 57546 23 1 0 155 1 0 395 chain 87802 chr22 51304566 + 36486402 36487358 L1PA3long 6157 + 5200 6156 40450 956 chain 44061 chr22 51304566 + 36516749 36517311 MLT2A2 560 - 0 560 64148 146 3 14 166 13 0 234 chain 23756 chr22 51304566 + 36523906 36524211 AluSp 311 + 0 299 111735 77 19 13 209 chain 17891 chr22 51304566 + 36557779 36558155 LTR3 431 - 47 405 133127 79 145 126 68 0 1 84 chain 3654 chr22 51304566 + 36565914 36565984 LTR49-int 1717 - 1473 1554 212729 37 1 10 7 0 4 7 1 0 12 1 0 4 chain 86305 chr22 51304566 + 36586063 36587115 MER11C 1089 - 26 1089 41038 199 6 0 126 0 1 38 1 0 5 0 4 135 8 9 160 1 0 69 0 4 58 0 9 246 chain 67788 chr22 51304566 + 36599190 36599970 MER11D 897 - 0 897 49328 136 0 10 470 4 111 170 chain 71114 chr22 51304566 + 36605372 36606397 MER11A 1151 - 4 1151 47880 158 9 10 15 10 9 34 0 1 36 18 0 22 8 15 11 14 48 101 2 3 145 0 1 84 13 14 51 0 1 86 15 11 63 1 0 74 0 99 55 chain 16088 chr22 51304566 + 36614727 36615024 L1PA11 4918 - 385 661 138093 13 25 16 15 1 0 15 9 7 73 7 6 41 0 1 4 1 0 6 8 0 79 chain 4043 chr22 51304566 + 36625478 36625615 MER77B 728 + 337 489 206760 22 76 91 39 chain 2621 chr22 51304566 + 36647161 36647566 MER4A 717 + 1 397 231408 13 1 0 19 1 0 5 342 335 24 chain 243617 chr22 51304566 + 36665122 36668384 L1P3 4156 - 851 4155 16582 575 18 30 65 28 6 107 0 2 395 9 7 208 0 1 135 13 12 67 0 7 282 9 12 75 0 4 37 12 9 242 3 29 161 4 0 7 1 2 68 0 1 77 15 18 8 0 1 7 4 3 83 0 1 150 3 2 31 2 1 56 2 1 27 6 8 21 8 22 241 chain 107912 chr22 51304566 + 36686483 36687740 SVA_D 2077 + 325 2077 34747 452 40 0 101 0 535 302 0 1 155 0 1 194 2 0 11 chain 3512 chr22 51304566 + 36713120 36713159 5S 121 + 0 39 215174 39 chain 28855 chr22 51304566 + 36785883 36786187 AluYa8 305 + 1 305 89648 304 chain 3825 chr22 51304566 + 36790846 36790887 MER66B 489 - 152 193 210005 41 chain 21988 chr22 51304566 + 36796176 36796457 AluSg7 307 + 0 281 120279 42 2 1 88 0 1 149 chain 14073 chr22 51304566 + 36823003 36823184 MER41A 554 + 0 184 144313 94 8 11 79 chain 6970 chr22 51304566 + 36887770 36887865 MSTA 426 + 328 426 177682 33 1 2 16 0 2 45 chain 3059 chr22 51304566 + 36891558 36891623 MIRb 242 - 106 173 223827 16 8 9 23 4 5 14 chain 26538 chr22 51304566 + 36929404 36929752 THE1B 368 - 0 360 97894 177 2 0 15 1 0 108 9 24 36 chain 20978 chr22 51304566 + 36972126 36972562 L1PB1 5432 + 5013 5420 123998 83 0 2 5 1 2 9 1 0 24 1 0 18 21 15 49 2 1 16 1 0 42 2 1 16 3 0 6 61 46 22 1 0 21 1 0 13 1 0 16 chain 2708 chr22 51304566 + 36991471 36991546 MER63A 208 + 135 208 230139 15 32 30 28 chain 4181 chr22 51304566 + 37001423 37001469 Tigger1 2417 + 2300 2346 204821 46 chain 3432 chr22 51304566 + 37019956 37019997 MIR3 191 + 71 112 216534 41 chain 3247 chr22 51304566 + 37055500 37055542 MIRb 242 - 122 164 220056 42 chain 2947 chr22 51304566 + 37070700 37070731 MIR 256 - 115 146 226147 31 chain 5681 chr22 51304566 + 37076414 37076801 HAL1-2a_MD 234 + 6 231 188302 6 3 0 8 6 0 7 6 0 12 6 0 16 0 6 7 16 1 13 157 42 13 2 39 19 15 0 13 39 0 23 chain 3773 chr22 51304566 + 37076848 37076955 HAL1-2a_MD 234 + 0 47 210775 10 60 0 37 chain 4062 chr22 51304566 + 37110272 37110376 MIR 256 - 63 185 206449 18 42 60 44 chain 5469 chr22 51304566 + 37190208 37190410 Tigger4a 237 + 17 237 190321 26 0 119 15 109 1 12 0 7 40 chain 19744 chr22 51304566 + 37233834 37234191 THE1B 368 - 0 368 127972 100 65 76 23 2 1 77 18 19 72 chain 3093 chr22 51304566 + 37239468 37239501 Tigger1 2417 - 779 812 223059 33 chain 4957 chr22 51304566 + 37302329 37302487 MER58B 340 - 9 166 195624 36 84 83 38 chain 3521 chr22 51304566 + 37305090 37305129 L1PA16 3655 - 1404 1443 215048 39 chain 40678 chr22 51304566 + 37336584 37337194 LTR9B 643 - 18 643 68326 17 22 21 56 0 14 71 21 22 193 14 22 5 3 0 114 2 1 15 3 0 74 chain 34388 chr22 51304566 + 37339888 37340309 MER57A1 433 - 9 433 77081 142 0 3 279 chain 23035 chr22 51304566 + 37341488 37341857 THE1B 368 - 0 361 115471 75 1 0 100 31 24 34 27 28 59 0 1 32 2 0 8 chain 9247 chr22 51304566 + 37353020 37353150 MSTB 430 - 40 169 164324 84 12 11 34 chain 3407 chr22 51304566 + 37356500 37356537 MIR 256 + 72 109 216954 37 chain 6251 chr22 51304566 + 37373862 37373957 AluJr 308 + 194 288 183160 60 1 2 25 2 0 7 chain 5101 chr22 51304566 + 37374481 37374638 MER45A 178 - 19 170 194077 23 6 5 35 58 60 14 7 0 14 chain 26137 chr22 51304566 + 37390671 37390970 AluYb8 318 - 11 318 99457 40 12 20 247 chain 3716 chr22 51304566 + 37399153 37399193 LTR7B 505 + 1 41 211690 40 chain 6613 chr22 51304566 + 37409274 37409357 HY3 101 + 13 99 180351 26 0 3 57 chain 3456 chr22 51304566 + 37453156 37453200 MIRb 242 + 67 111 216061 44 chain 5429 chr22 51304566 + 37510635 37511002 MLT1C 463 - 37 400 190713 25 160 162 20 21 18 11 80 77 50 chain 24893 chr22 51304566 + 37515402 37515694 AluSp 311 + 6 298 105391 292 chain 144942 chr22 51304566 + 37546524 37548636 L1MA3 4352 - 39 2135 25335 25 1 0 6 1 0 22 2 0 25 4 0 11 1 5 107 79 64 127 0 1 453 6 17 47 33 32 45 0 4 94 8 9 87 1 2 72 0 2 6 5 3 78 2 1 74 10 3 378 5 0 201 1 0 95 chain 18703 chr22 51304566 + 37614316 37614534 AluSp 311 + 2 221 130934 69 0 1 149 chain 25103 chr22 51304566 + 37616620 37617005 THE1C 375 - 26 375 104274 145 0 3 23 0 3 64 7 0 41 44 9 61 chain 31149 chr22 51304566 + 37656062 37656486 MER1A 529 - 0 436 82258 62 3 9 22 6 11 31 0 4 119 3 0 178 chain 5450 chr22 51304566 + 37688109 37688172 MLT1J 494 + 102 165 190529 63 chain 2390 chr22 51304566 + 37874411 37874461 MER53 195 + 94 139 234311 10 2 4 22 7 0 9 chain 5947 chr22 51304566 + 37928924 37929012 L1MC1 2226 + 1307 1397 185708 54 3 5 31 chain 24022 chr22 51304566 + 37968491 37968776 AluY 311 + 0 285 110200 37 1 0 94 1 2 152 chain 22884 chr22 51304566 + 38031645 38031921 AluSp 311 - 24 311 116169 5 0 3 193 0 7 7 0 1 71 chain 3001 chr22 51304566 + 38079196 38079232 MIRc 230 + 95 131 225016 36 chain 118403 chr22 51304566 + 38112976 38114411 LTR12C 1709 - 0 1709 31646 64 3 7 11 1 0 399 11 4 112 1 0 98 0 278 222 0 1 513 chain 3346 chr22 51304566 + 38167116 38167217 MIR 256 - 116 230 218107 6 0 1 27 49 61 19 chain 127928 chr22 51304566 + 38182206 38183614 SVA_D 2077 + 8 2070 28588 29 1 0 402 0 40 319 0 615 657 chain 23963 chr22 51304566 + 38183791 38184086 AluSq2 311 + 1 302 110552 66 0 12 68 6 0 155 chain 19644 chr22 51304566 + 38184150 38184393 AluY 311 + 63 305 128269 70 2 0 78 7 8 86 chain 25555 chr22 51304566 + 38187485 38187777 AluYc3 301 + 0 293 101955 113 1 2 178 chain 6432 chr22 51304566 + 38195146 38195221 MER83 447 + 329 404 181762 75 chain 24515 chr22 51304566 + 38195726 38196025 AluSp 311 - 10 311 107472 27 13 15 259 chain 15320 chr22 51304566 + 38232535 38232738 L1PA8 5853 + 5650 5849 140426 29 1 0 14 1 0 47 2 1 19 1 0 89 chain 10873 chr22 51304566 + 38233724 38233850 AluSx3 311 + 11 136 156685 107 1 0 18 chain 28480 chr22 51304566 + 38242855 38243159 AluYa5 310 - 6 310 91267 304 chain 11141 chr22 51304566 + 38249242 38249401 MER50 708 - 49 193 155670 7 15 0 137 chain 3192 chr22 51304566 + 38258462 38258523 MER58A 224 - 119 179 221082 11 4 5 25 3 0 14 0 1 4 chain 26358 chr22 51304566 + 38263685 38263990 AluY 311 + 6 311 98580 305 chain 25687 chr22 51304566 + 38264641 38264948 AluSp 311 - 4 311 101343 307 chain 23256 chr22 51304566 + 38279331 38279598 AluY 311 + 25 293 114410 107 0 1 160 chain 23749 chr22 51304566 + 38348708 38349031 MER1B 344 + 0 336 111782 96 4 15 105 4 0 51 6 12 57 chain 23974 chr22 51304566 + 38415747 38416050 AluSp 311 + 10 311 110485 17 3 1 283 chain 82789 chr22 51304566 + 38550221 38552162 L1M1 2793 + 522 2695 42421 11 1 0 9 25 19 9 1 0 5 7 6 9 3 0 9 36 20 16 82 26 41 66 49 14 32 11 23 7 6 24 6 4 6 1 0 37 0 2 15 5 3 107 1 0 123 343 664 127 12 18 58 0 3 5 0 1 21 0 23 60 2 1 112 3 0 61 4 8 19 1 6 122 1 0 133 24 22 39 3 8 37 1 0 11 1 0 10 chain 25936 chr22 51304566 + 38566900 38567198 AluSp 311 + 5 301 100269 127 2 0 169 chain 24059 chr22 51304566 + 38595518 38595813 AluYc 301 + 0 290 109988 114 4 0 135 7 6 35 chain 23916 chr22 51304566 + 38633805 38634105 AluSp 311 - 11 311 110833 53 7 1 16 0 5 80 0 1 144 chain 3393 chr22 51304566 + 38649736 38649772 L1MD2 1676 + 649 685 217225 36 chain 4079 chr22 51304566 + 38678304 38678357 MIR 256 - 127 180 206196 53 chain 6981 chr22 51304566 + 38703204 38703287 MER2 342 + 131 215 177596 4 0 1 79 chain 3453 chr22 51304566 + 38752574 38752612 Tigger4 2445 - 514 552 216162 38 chain 108825 chr22 51304566 + 38754757 38756796 L1M1 2793 - 344 2293 34483 15 1 0 18 0 2 126 8 13 68 1 0 64 18 37 77 1 0 4 7 14 20 0 3 34 8 12 196 5 9 21 1 2 316 1 3 29 7 16 89 4 0 82 1 0 17 23 23 136 1 0 98 15 12 23 21 0 31 1 0 8 2 0 26 19 18 9 4 2 10 4 1 14 14 11 11 218 133 6 3 0 11 1 0 12 22 16 11 1 0 7 18 14 9 1 0 10 chain 91142 chr22 51304566 + 38761611 38762658 L1PA5 6144 + 5096 6144 39252 414 2 3 631 chain 24384 chr22 51304566 + 38767290 38767570 L1PA5 6144 - 0 280 108172 280 chain 198444 chr22 51304566 + 38780099 38782263 L1PA3long 6157 + 3988 6157 19325 656 0 5 1508 chain 23019 chr22 51304566 + 38792543 38792802 LTR7Y 441 - 0 262 115533 100 0 2 15 0 1 144 chain 112683 chr22 51304566 + 38805407 38806730 SVA_B 1603 - 4 1600 33481 637 5 1 28 1 0 8 4 0 18 0 159 62 0 116 500 14 1 18 10 30 18 chain 22627 chr22 51304566 + 38807445 38807736 AluSp 311 + 13 310 117440 119 1 0 81 14 23 67 2 0 7 chain 5087 chr22 51304566 + 38832800 38832863 MIR 256 - 142 205 194206 63 chain 22277 chr22 51304566 + 38900932 38901213 AluSp 311 - 29 311 119007 20 5 7 129 1 0 126 chain 7205 chr22 51304566 + 38910166 38910251 MER41B 635 + 15 100 176036 85 chain 22013 chr22 51304566 + 38920816 38921070 AluSp 311 + 32 286 120168 254 chain 37342 chr22 51304566 + 38936848 38937283 PABL_A 660 + 0 442 73034 90 0 6 172 0 1 173 chain 24545 chr22 51304566 + 38941433 38941714 AluYk4 311 - 18 300 107289 99 0 1 182 chain 23819 chr22 51304566 + 38950823 38951111 AluY 311 + 1 299 111365 46 0 16 192 6 0 44 chain 21914 chr22 51304566 + 38961303 38961691 MER66B 489 + 47 449 120572 29 9 8 23 1 0 97 0 2 82 1 0 13 1 0 36 58 62 11 5 17 22 chain 3078 chr22 51304566 + 39002110 39002144 MER74A 558 + 247 281 223368 34 chain 29213 chr22 51304566 + 39042253 39042566 AluYa5 310 - 0 310 87991 184 3 0 126 chain 3059 chr22 51304566 + 39051171 39051206 MER41A 554 - 110 145 223836 35 chain 24942 chr22 51304566 + 39097886 39098185 AluSp 311 - 9 311 105095 188 0 3 111 chain 25577 chr22 51304566 + 39099650 39099956 AluSp 311 - 5 311 101838 306 chain 23482 chr22 51304566 + 39117076 39117382 AluSp 311 - 15 311 113208 15 16 5 155 0 1 120 chain 3037 chr22 51304566 + 39122568 39122634 MIRb 242 - 113 181 224268 30 7 10 11 1 2 10 2 0 5 chain 21623 chr22 51304566 + 39162751 39163003 AluSp 311 - 2 254 121687 252 chain 45662 chr22 51304566 + 39168022 39168573 MER41A 554 + 0 551 62343 55 2 0 304 0 1 67 0 1 123 chain 16206 chr22 51304566 + 39188055 39188265 Tigger3b 1229 - 433 641 137732 27 3 0 46 0 1 134 chain 38479 chr22 51304566 + 39190950 39192111 LTR8 732 + 9 732 71471 69 2 0 57 1 0 58 5 6 80 13 10 125 615 181 55 0 1 81 chain 166198 chr22 51304566 + 39202337 39204560 SVA_F 1814 + 9 1814 22494 889 129 2 47 0 15 49 178 0 165 131 0 232 0 3 403 chain 11971 chr22 51304566 + 39203226 39203355 SVA_F 1814 + 962 1091 83162 129 chain 9744 chr22 51304566 + 39203451 39203556 SVA_F 1814 + 1187 1291 83162 87 1 0 17 chain 2049 chr22 51304566 + 39203573 39203628 SVA_F 1814 + 893 947 134513 44 1 0 10 chain 2201 chr22 51304566 + 39203797 39203823 SVA_F 1814 + 1177 1201 161055 7 2 0 17 chain 4058 chr22 51304566 + 39203823 39203887 SVA_F 1814 + 1025 1089 154629 64 chain 1416 chr22 51304566 + 39203887 39203925 SVA_F 1814 + 962 1000 134513 38 chain 22071 chr22 51304566 + 39250317 39250662 L1PA8 5853 - 0 345 119919 90 1 0 22 2 1 26 0 1 11 0 6 7 6 5 5 1 0 70 3 1 36 9 8 56 chain 6730 chr22 51304566 + 39283406 39283482 L1MA9 1812 + 564 640 179467 76 chain 80946 chr22 51304566 + 39394106 39395149 MER11C 1089 - 30 1089 43218 20 1 2 117 1 0 54 0 1 127 0 1 38 6 9 112 16 15 177 1 0 65 0 4 61 0 9 247 chain 77520 chr22 51304566 + 39408744 39409704 LTR13A 966 - 0 966 44730 200 1 0 228 0 6 146 1 0 32 1 2 223 0 1 128 chain 48058 chr22 51304566 + 39432511 39433961 MER4E1 777 - 0 774 60438 105 6 2 23 445 104 205 23 28 217 330 0 68 6 0 22 chain 3447 chr22 51304566 + 39432645 39432681 MER4E1 777 - 709 745 216253 36 chain 35968 chr22 51304566 + 39434912 39435358 LTR7C 471 - 24 471 74932 197 8 9 241 chain 21700 chr22 51304566 + 39452276 39452689 LTR7B 505 - 10 505 121389 22 0 1 18 14 13 23 6 5 5 0 1 51 39 45 15 8 7 32 18 86 56 0 10 7 6 5 93 chain 242961 chr22 51304566 + 39454779 39458489 HERVH-int 3825 - 0 3747 16615 458 21 5 191 5 6 110 40 39 34 169 0 3 0 3 555 8 7 5 0 1 111 2 1 26 38 0 168 5 10 374 0 27 58 0 1 25 1 0 4 0 1 173 9 0 206 16 1 47 1 4 391 1 0 15 101 332 13 0 2 5 20 17 63 1 0 50 0 1 10 105 121 54 6 7 12 chain 25080 chr22 51304566 + 39458564 39458975 LTR7B 505 - 1 498 104407 31 0 1 18 18 17 85 32 40 60 13 81 55 1 11 98 chain 41945 chr22 51304566 + 39460109 39461719 MER4E1 777 - 0 688 66692 192 1004 73 176 0 5 158 47 51 33 chain 15300 chr22 51304566 + 39469012 39469194 MER4E1 777 - 10 192 140493 182 chain 7373 chr22 51304566 + 39470687 39470791 MER4E1 777 - 675 774 174956 75 5 0 24 chain 35945 chr22 51304566 + 39471738 39472186 LTR7C 471 - 22 471 74963 199 8 9 241 chain 11843 chr22 51304566 + 39499306 39499518 L1P4 1494 + 1136 1350 152855 62 37 30 74 4 13 35 chain 24291 chr22 51304566 + 39500437 39500744 AluSp 311 + 9 311 108700 11 7 2 289 chain 79485 chr22 51304566 + 39501278 39502768 MER57-int 2662 + 248 1372 43834 65 2 0 37 1 10 59 73 0 22 24 16 55 0 3 302 339 27 26 1 9 149 0 3 71 0 4 37 0 2 227 chain 48883 chr22 51304566 + 39506101 39508803 MER4E1 777 - 0 759 59818 195 316 0 31 6 11 15 0 1 22 1418 76 65 300 0 64 0 9 270 chain 46146 chr22 51304566 + 39510237 39510870 LTR6A 649 + 10 649 61897 15 17 21 33 17 20 5 3 0 15 0 1 318 0 2 147 1 0 62 chain 41142 chr22 51304566 + 39511822 39512964 MER4E1 777 + 0 777 67728 25 8 0 109 249 198 24 0 1 70 312 0 115 10 16 65 11 10 144 chain 8276 chr22 51304566 + 39515038 39515133 LTR44 473 + 370 465 169529 95 chain 6243 chr22 51304566 + 39523092 39523174 LTR47A 437 + 295 383 183229 7 0 6 75 chain 23543 chr22 51304566 + 39526382 39526728 LTR7C 471 + 0 446 112893 75 1 91 23 10 14 21 1 4 149 0 2 28 1 0 32 0 2 5 chain 5017 chr22 51304566 + 39538875 39538929 Tigger3b 1229 + 484 538 194963 54 chain 2946 chr22 51304566 + 39582058 39582094 L1ME3A 1206 + 508 544 226217 36 chain 29309 chr22 51304566 + 39607667 39607978 AluYb8 318 + 0 312 87520 108 0 1 203 chain 187725 chr22 51304566 + 39612828 39614968 L1PA6 6164 + 4004 6162 20269 401 1 20 617 1 0 266 2 0 344 0 1 126 0 1 382 chain 24289 chr22 51304566 + 39628497 39628792 AluSc5 308 - 13 308 108710 295 chain 3773 chr22 51304566 + 39658975 39659019 MSTC 436 - 3 47 210762 44 chain 19030 chr22 51304566 + 39671071 39671296 AluY 311 + 82 305 130030 172 2 0 51 chain 25283 chr22 51304566 + 39689101 39689402 AluSx4 309 + 3 305 103303 254 0 1 47 chain 8100 chr22 51304566 + 39701434 39701559 Tigger2a 444 + 210 321 170487 98 14 0 13 chain 24160 chr22 51304566 + 39711964 39712258 AluSp 311 + 2 295 109427 280 1 0 13 chain 26667 chr22 51304566 + 39728522 39729096 Tigger1 2417 - 1681 2126 97432 52 1 5 278 215 79 16 0 3 12 chain 6796 chr22 51304566 + 39728876 39728969 Tigger1 2417 - 1900 1995 178990 54 3 5 36 chain 40359 chr22 51304566 + 39730155 39730687 LTR61 567 - 36 567 68790 136 0 3 170 3 0 27 0 2 80 15 0 47 0 11 29 0 1 25 chain 17463 chr22 51304566 + 39730701 39731247 MER41A 554 - 7 243 134352 106 317 0 37 1 8 85 chain 116430 chr22 51304566 + 39753363 39754796 LTR12C 1709 + 0 1709 32302 19 0 4 223 62 0 546 1 319 6 2 0 107 0 4 77 7 21 383 chain 4650 chr22 51304566 + 39776925 39777012 MER34 540 - 406 503 199059 17 21 31 49 chain 6227 chr22 51304566 + 39807656 39807737 L1ME1 1623 + 1241 1322 183342 81 chain 10464 chr22 51304566 + 39820982 39821524 MER47A 366 + 43 264 158417 14 37 38 60 342 17 84 0 3 5 chain 4317 chr22 51304566 + 39914890 39914993 MIRb 242 - 32 145 202998 26 43 53 34 chain 24315 chr22 51304566 + 39935343 39935627 AluSx4 309 - 14 299 108580 15 0 1 269 chain 5323 chr22 51304566 + 39961620 39961769 HAL1-2a_MD 234 - 12 234 191798 38 22 137 38 42 0 9 chain 23990 chr22 51304566 + 39981908 39982190 AluSc5 308 + 5 288 110384 37 0 1 245 chain 60826 chr22 51304566 + 40088330 40089171 L1PA8 5853 + 5042 5847 52418 18 0 19 431 47 0 54 1 0 44 2 0 55 1 0 4 0 1 7 5 4 9 2 0 52 2 1 10 10 9 87 chain 66545 chr22 51304566 + 40129897 40130748 L1PA8 5853 - 0 841 49848 92 7 6 14 2 1 44 4 0 8 2 1 8 2 1 68 2 0 46 1 0 466 4 5 81 chain 22056 chr22 51304566 + 40153733 40154080 THE1D 372 + 0 372 119993 12 1 3 57 1 11 13 0 1 90 5 7 31 15 21 86 9 13 27 chain 12804 chr22 51304566 + 40177847 40178009 L1MA4 2864 + 33 194 149036 26 1 0 135 chain 105617 chr22 51304566 + 40237372 40238534 L1HS 6032 - 3636 4798 35346 1162 chain 99141 chr22 51304566 + 40238534 40239620 L1PA3long 6157 + 5066 6152 36921 1086 chain 21926 chr22 51304566 + 40242399 40242640 L1PA3long 6157 - 907 1148 120519 241 chain 73393 chr22 51304566 + 40242659 40243480 L1PA3long 6157 + 5258 6102 46839 68 2 1 336 0 24 136 0 1 21 1 0 257 chain 4431 chr22 51304566 + 40243480 40243531 L1PA3long 6157 + 6106 6157 201577 51 chain 25990 chr22 51304566 + 40251996 40252304 AluSp 311 + 0 307 100051 19 1 0 288 chain 26037 chr22 51304566 + 40269895 40270249 THE1B 368 - 0 368 99875 170 2 0 26 1 0 80 0 1 24 7 23 44 chain 5055 chr22 51304566 + 40277151 40277369 DNA1_Mam 279 + 11 221 194585 15 7 2 34 27 29 28 83 79 5 1 0 18 chain 22761 chr22 51304566 + 40290271 40290519 L1PA3long 6157 + 5847 6095 116778 248 chain 3872 chr22 51304566 + 40363385 40363431 MIR 256 + 174 220 209268 46 chain 6518 chr22 51304566 + 40373664 40373767 L1MC1 2226 + 1277 1387 181099 64 12 19 27 chain 4177 chr22 51304566 + 40412136 40412189 LTR56 451 - 187 241 204873 36 0 1 17 chain 25214 chr22 51304566 + 40465482 40465791 AluSp 311 - 5 311 103664 11 2 0 258 1 0 37 chain 13453 chr22 51304566 + 40530569 40530725 L1PA7 6471 + 6310 6466 146517 156 chain 8806 chr22 51304566 + 40563388 40563564 L1MB2 1706 + 1535 1694 166614 37 6 0 6 13 4 10 21 19 83 chain 8888 chr22 51304566 + 40597742 40597948 Tigger4a 237 + 0 208 166199 34 10 0 37 15 19 51 40 48 19 chain 21987 chr22 51304566 + 40740099 40740403 AluY 311 + 0 310 120282 51 17 25 47 8 6 181 chain 26647 chr22 51304566 + 40785629 40785936 AluSp 311 + 0 310 97489 91 0 3 216 chain 5838 chr22 51304566 + 40875673 40875794 Tigger4a 237 + 69 197 186791 36 36 43 49 chain 24660 chr22 51304566 + 40880797 40881090 AluSc5 308 + 3 295 106671 156 1 0 136 chain 133890 chr22 51304566 + 40896395 40898710 SVA_F 1814 - 2 1479 27242 538 480 0 312 302 14 23 78 0 386 0 8 196 chain 2792 chr22 51304566 + 40896993 40897060 SVA_F 1814 - 649 716 81785 67 chain 12415 chr22 51304566 + 40897060 40897413 SVA_F 1814 - 540 716 72053 97 1 0 61 176 0 18 chain 5292 chr22 51304566 + 40897219 40897346 SVA_F 1814 - 889 939 81785 24 80 2 11 0 1 12 chain 5621 chr22 51304566 + 40897243 40897311 SVA_F 1814 - 1082 1150 188863 68 chain 3078 chr22 51304566 + 40897346 40897378 SVA_F 1814 - 889 921 196216 32 chain 3377 chr22 51304566 + 40897747 40897803 SVA_F 1814 - 747 803 142416 56 chain 1794 chr22 51304566 + 40897803 40897854 SVA_F 1814 - 916 967 72053 10 0 1 31 1 0 9 chain 12644 chr22 51304566 + 40897892 40898027 SVA_F 1814 - 540 675 119770 135 chain 2622 chr22 51304566 + 40898050 40898078 SVA_F 1814 - 698 726 119770 28 chain 1759 chr22 51304566 + 40898078 40898128 SVA_F 1814 - 1046 1136 72053 17 6 46 27 chain 8443 chr22 51304566 + 40924826 40924951 MER30 238 + 50 199 168604 62 4 0 6 3 20 32 0 11 18 chain 136690 chr22 51304566 + 40932471 40934591 SVA_F 1814 + 335 1814 26694 553 1 0 4 1 0 8 301 0 48 0 15 177 353 0 674 chain 2174 chr22 51304566 + 40933038 40933063 SVA_F 1814 + 1013 1038 218888 25 chain 4358 chr22 51304566 + 40933063 40933143 SVA_F 1814 + 1117 1198 202468 10 0 1 4 21 21 45 chain 976 chr22 51304566 + 40933146 40933209 SVA_F 1814 + 665 728 152469 63 chain 11971 chr22 51304566 + 40933210 40933339 SVA_F 1814 + 962 1091 83161 129 chain 4035 chr22 51304566 + 40933564 40933606 SVA_F 1814 + 900 942 193165 42 chain 2508 chr22 51304566 + 40933615 40933693 SVA_F 1814 + 1015 1093 141663 78 chain 4202 chr22 51304566 + 40933693 40933738 SVA_F 1814 + 966 1011 199934 45 chain 2498 chr22 51304566 + 40933752 40933778 SVA_F 1814 + 1102 1128 136839 26 chain 8900 chr22 51304566 + 40933778 40933917 SVA_F 1814 + 888 964 131306 56 81 18 2 chain 7784 chr22 51304566 + 40933834 40933915 SVA_F 1814 + 1184 1265 136839 81 chain 27644 chr22 51304566 + 40950794 40951235 MSTB-int 1649 + 1118 1628 94228 29 25 82 36 0 4 6 23 18 19 1 4 193 5 9 17 1 7 86 chain 22449 chr22 51304566 + 40962227 40962522 AluSg7 307 - 12 306 118254 140 17 17 6 1 0 131 chain 22063 chr22 51304566 + 41010492 41010776 AluSp 311 - 12 297 119950 35 5 6 244 chain 13675 chr22 51304566 + 41019328 41019487 L1PA3long 6157 - 0 160 145694 19 0 1 140 chain 24678 chr22 51304566 + 41034846 41035146 AluY 311 + 2 300 106561 121 3 4 34 2 0 118 4 3 18 chain 4857 chr22 51304566 + 41051935 41051991 THE1D 372 + 288 344 196707 56 chain 24008 chr22 51304566 + 41052955 41053244 AluSp 311 - 13 300 110283 11 2 0 276 chain 5164 chr22 51304566 + 41072265 41072365 MSTA 426 - 229 353 193404 49 26 50 25 chain 37066 chr22 51304566 + 41085188 41085956 PABL_A 660 - 223 660 73435 96 0 1 257 332 0 83 chain 18845 chr22 51304566 + 41088468 41088702 MER51E 476 - 207 476 130529 72 6 41 156 chain 19488 chr22 51304566 + 41092470 41092746 HERVK-int 6823 - 6357 6632 128694 11 1 0 114 0 1 4 1 0 15 0 11 12 11 0 107 chain 15547 chr22 51304566 + 41096437 41097130 MER34D 576 + 0 253 139742 58 0 2 11 436 0 93 13 12 28 16 11 38 chain 5271 chr22 51304566 + 41101206 41101367 MER21C 908 - 28 178 192313 15 80 69 66 chain 6138 chr22 51304566 + 41111152 41111264 L1MB2 1706 + 1526 1627 184095 50 15 6 16 1 0 13 1 0 16 chain 3263 chr22 51304566 + 41124443 41124481 tRNA-Gly-GGA 38 + 0 38 219743 38 chain 46281 chr22 51304566 + 41124752 41125328 LTR14B 630 - 0 630 61786 87 0 3 8 6 7 66 0 4 128 7 53 274 chain 19010 chr22 51304566 + 41133574 41133890 L1PA15 4387 + 3980 4286 130088 114 0 1 9 1 0 21 6 5 55 1 0 19 4 0 12 2 1 39 18 15 15 chain 20426 chr22 51304566 + 41138219 41138460 AluY 311 + 57 299 125825 75 0 1 166 chain 173508 chr22 51304566 + 41140157 41142377 SVA_E 1901 - 0 1890 21650 850 49 0 28 50 0 100 53 0 80 0 1 21 1 0 4 177 0 664 1 0 142 chain 4276 chr22 51304566 + 41141007 41141056 SVA_E 1901 - 1022 1071 156561 49 chain 1956 chr22 51304566 + 41141084 41141132 SVA_E 1901 - 625 672 121471 15 1 0 32 chain 1606 chr22 51304566 + 41141234 41141270 SVA_E 1901 - 929 965 137148 36 chain 2771 chr22 51304566 + 41141393 41141461 SVA_E 1901 - 738 806 121471 68 chain 4515 chr22 51304566 + 41141461 41141526 SVA_E 1901 - 679 793 133468 44 0 49 21 chain 13089 chr22 51304566 + 41151926 41152127 MER4D1 891 + 586 800 147888 12 0 5 59 1 0 4 20 29 105 chain 27795 chr22 51304566 + 41157881 41158393 L1MB3 1562 + 586 1055 93712 28 2 0 130 82 36 119 19 23 51 1 0 36 21 23 23 chain 30158 chr22 51304566 + 41171448 41171762 AluYb8 318 - 0 314 84312 314 chain 14803 chr22 51304566 + 41171766 41171977 THE1C 375 + 154 375 141925 17 15 24 79 0 1 100 chain 10290 chr22 51304566 + 41174574 41174695 L1PA5 6144 - 1 122 159180 121 chain 3852 chr22 51304566 + 41179299 41179345 MER20 218 - 75 121 209615 46 chain 13216 chr22 51304566 + 41199617 41199794 L1MA6 2487 - 259 434 147404 115 0 1 43 6 3 13 chain 11969 chr22 51304566 + 41201532 41201720 MER30B 195 - 6 195 152327 13 26 20 69 0 7 80 chain 5611 chr22 51304566 + 41201824 41201894 MLT1D 503 + 432 503 188974 33 0 1 37 chain 23252 chr22 51304566 + 41233348 41233660 AluSp 311 + 11 292 114434 69 32 1 211 chain 21686 chr22 51304566 + 41241951 41242214 AluSp 311 - 23 286 121444 263 chain 30296 chr22 51304566 + 41294238 41294556 AluYb8 318 - 0 318 83934 318 chain 23858 chr22 51304566 + 41306738 41307016 AluSc5 308 + 11 285 111139 115 4 0 159 chain 20904 chr22 51304566 + 41346243 41346479 AluSq2 311 + 30 266 124263 236 chain 5709 chr22 51304566 + 41400096 41400230 L1MB5 1630 - 153 282 188021 7 6 0 55 23 22 19 8 10 16 chain 4074 chr22 51304566 + 41411128 41411435 L1MC4a 1092 - 0 260 206281 30 148 118 28 82 65 19 chain 6696 chr22 51304566 + 41461566 41461650 HY4 93 - 9 93 179716 84 chain 12455 chr22 51304566 + 41494017 41494157 L1PA4 6152 - 14 153 150442 4 1 0 135 chain 30892 chr22 51304566 + 41512225 41512612 L1PA7 6471 - 4 398 82695 137 0 1 67 6 9 53 0 4 22 1 0 101 chain 23269 chr22 51304566 + 41582879 41583163 AluY 311 + 9 311 114343 35 0 16 72 0 1 91 0 1 86 chain 11209 chr22 51304566 + 41596820 41596957 AluSp 311 + 1 132 155387 29 6 0 102 chain 18396 chr22 51304566 + 41604749 41605023 AluSg7 307 - 10 286 131804 22 17 18 115 10 11 78 6 0 7 0 6 19 chain 21500 chr22 51304566 + 41664261 41664550 AluSp 311 - 14 303 122147 141 22 22 126 chain 28502 chr22 51304566 + 41673075 41673381 AluYa5 310 - 5 310 91177 182 1 0 123 chain 24306 chr22 51304566 + 41674860 41675154 AluY 311 + 0 290 108627 91 4 0 199 chain 148647 chr22 51304566 + 41690027 41691716 SVA_D 2077 + 6 2076 24796 680 0 40 161 0 83 25 0 51 42 0 1 14 0 205 37 1 2 41 0 1 4 9 8 675 chain 28564 chr22 51304566 + 41705012 41705313 AluYg6 310 - 9 310 90901 301 chain 11758 chr22 51304566 + 41708050 41708180 AluYc 301 + 161 291 153229 130 chain 29572 chr22 51304566 + 41717833 41718142 AluYa5 310 - 1 310 86315 309 chain 22758 chr22 51304566 + 41732867 41733146 AluSp 311 + 10 288 116790 122 1 0 156 chain 3375 chr22 51304566 + 41748426 41748462 U3 216 + 0 36 217569 36 chain 5198 chr22 51304566 + 41770065 41770127 Tigger2 2703 - 165 227 193054 62 chain 26486 chr22 51304566 + 41775594 41775926 AluSp 311 + 8 311 98092 100 29 0 203 chain 22196 chr22 51304566 + 41797425 41797725 AluSp 311 + 0 305 119369 9 0 2 42 18 20 39 0 2 152 0 1 33 2 0 5 chain 26601 chr22 51304566 + 41839625 41839929 AluSp 311 - 10 311 97651 246 3 0 55 chain 9802 chr22 51304566 + 41853166 41853287 MSTC 436 - 315 436 161581 121 chain 20768 chr22 51304566 + 41893905 41894151 AluSc 308 + 38 284 124722 246 chain 22913 chr22 51304566 + 41939370 41939653 AluSc 308 + 21 308 116038 39 0 8 92 3 0 97 1 0 51 chain 23817 chr22 51304566 + 41942593 41942902 AluSc8 310 + 0 295 111382 134 17 2 125 0 1 33 chain 21600 chr22 51304566 + 41950453 41950715 AluY 311 + 25 284 121767 225 3 0 34 chain 97441 chr22 51304566 + 41989356 41990828 LTR12C 1709 + 0 1641 37445 16 5 14 248 0 4 15 0 1 134 0 1 28 8 10 179 0 278 106 0 2 76 1 0 5 3 1 93 0 17 2 48 0 19 120 0 32 2 1 60 0 29 87 9 8 161 1 0 14 chain 145078 chr22 51304566 + 42026496 42028188 SVA_D 2077 - 0 2071 25312 10 8 0 213 0 38 51 1 0 338 0 49 144 5 6 8 0 1 31 11 12 17 2 271 254 0 40 569 5 0 7 6 0 12 chain 38633 chr22 51304566 + 42038046 42038689 L1MA3 4352 - 437 1727 71244 7 0 3 29 7 15 99 1 3 94 37 273 5 1 0 84 16 35 103 33 413 127 chain 8492 chr22 51304566 + 42044097 42044194 HY3 101 - 4 101 168333 97 chain 9139 chr22 51304566 + 42075714 42075821 U6 107 + 0 107 164860 107 chain 25550 chr22 51304566 + 42096943 42097242 AluSp 311 - 12 311 101987 299 chain 5136 chr22 51304566 + 42115636 42115695 MSTD 398 - 339 398 193715 59 chain 7616 chr22 51304566 + 42122570 42122704 MER104 178 + 1 138 173438 22 0 2 34 25 26 53 chain 10130 chr22 51304566 + 42129111 42129850 MER2 342 + 87 223 159945 52 603 0 84 chain 14498 chr22 51304566 + 42136941 42137112 AluSc5 308 - 37 208 142896 171 chain 7515 chr22 51304566 + 42137254 42137348 MLT1C 463 + 368 462 174069 94 chain 29099 chr22 51304566 + 42140490 42140801 AluYa5 310 - 0 310 88560 184 1 0 126 chain 8187 chr22 51304566 + 42143315 42143415 HY3 101 + 0 100 170028 100 chain 36563 chr22 51304566 + 42156555 42157029 LTR2B 499 - 0 490 74155 182 1 0 14 0 1 173 0 19 39 2 0 57 1 0 5 chain 11610 chr22 51304566 + 42193629 42193806 Tigger4b 360 + 183 360 153857 38 0 2 50 0 1 16 0 9 8 5 0 9 7 0 44 chain 26356 chr22 51304566 + 42198638 42198946 AluY 311 + 2 311 98588 124 0 1 184 chain 23491 chr22 51304566 + 42199860 42200149 AluY 311 + 7 295 113168 126 1 0 162 chain 21705 chr22 51304566 + 42217325 42217584 L1PA4 6152 - 0 266 121370 159 10 17 90 chain 25023 chr22 51304566 + 42268929 42269228 AluSp 311 + 10 309 104666 299 chain 23252 chr22 51304566 + 42278534 42278815 AluSq 315 + 7 290 114435 126 0 2 155 chain 27795 chr22 51304566 + 42288380 42288672 AluYg6 310 + 9 301 93716 292 chain 22640 chr22 51304566 + 42291872 42292161 AluY 311 + 11 299 117373 32 14 10 60 0 2 17 0 1 166 chain 25837 chr22 51304566 + 42322922 42323223 AluSg7 307 - 5 307 100719 175 0 1 126 chain 25091 chr22 51304566 + 42369378 42369701 AluY 311 + 0 307 104339 44 8 5 77 13 0 181 chain 3754 chr22 51304566 + 42380384 42380441 MER5A1 166 - 47 105 211082 16 7 8 34 chain 26066 chr22 51304566 + 42386471 42386776 AluY 311 + 4 309 99770 305 chain 14443 chr22 51304566 + 42402539 42402750 HSMAR2 1300 + 1053 1272 143072 21 8 9 161 1 8 20 chain 23715 chr22 51304566 + 42414946 42415239 AluY 311 + 0 297 111957 16 0 2 79 0 2 6 1 0 12 0 1 179 chain 5684 chr22 51304566 + 42421193 42421264 L1MB5 1630 - 1062 1135 188255 33 0 2 38 chain 13178 chr22 51304566 + 42421264 42421456 MER30 238 + 0 238 147559 17 1 19 69 5 32 59 1 2 40 chain 75916 chr22 51304566 + 42430254 42431272 MER11C 1089 - 26 1089 45530 25 0 1 117 1 0 54 0 1 76 0 28 23 0 1 38 1 0 4 4 8 109 16 15 65 1 2 110 1 0 65 0 4 62 0 9 246 chain 21129 chr22 51304566 + 42437211 42437508 AluSc 308 + 11 302 123450 35 17 12 211 11 10 23 chain 2816 chr22 51304566 + 42449251 42449286 L1MB7 1623 - 201 239 228507 26 0 3 9 chain 10845 chr22 51304566 + 42465266 42465784 MER47A 366 - 71 296 156807 60 330 16 89 25 46 14 chain 8841 chr22 51304566 + 42472059 42472166 U13 108 - 1 108 166426 107 chain 28353 chr22 51304566 + 42484129 42484428 AluYb8 318 + 0 299 91753 299 chain 86149 chr22 51304566 + 42491171 42492239 MER11B 1079 + 1 1064 41097 219 0 5 34 3 0 156 1 0 145 36 35 177 8 2 110 4 5 175 chain 3917 chr22 51304566 + 42497857 42497900 L1PBa 3878 - 1878 1921 208587 43 chain 3140 chr22 51304566 + 42500431 42500467 L1PBa 3878 - 2939 2975 222175 36 chain 29351 chr22 51304566 + 42509519 42509837 AluYb8 318 + 0 316 87286 132 2 0 184 chain 14493 chr22 51304566 + 42534805 42535189 LTR12C 1709 + 897 1196 142910 12 42 1 123 128 0 35 7 91 37 chain 2061 chr22 51304566 + 42535035 42535058 LTR12C 1709 + 1124 1147 238089 23 chain 31431 chr22 51304566 + 42542819 42543363 L1M1 2793 + 2067 2573 81764 62 7 12 61 62 13 7 0 4 59 1 0 4 10 14 137 26 25 108 chain 18684 chr22 51304566 + 42591506 42591744 AluSq2 311 - 10 250 130989 90 0 1 76 4 5 68 chain 2749 chr22 51304566 + 42614131 42614184 MIR 256 - 67 140 229493 23 12 32 18 chain 3618 chr22 51304566 + 42617422 42617464 LTR33 499 + 457 499 213374 42 chain 29577 chr22 51304566 + 42621338 42621648 AluYb8 318 + 0 310 86287 310 chain 20150 chr22 51304566 + 42648489 42648746 AluSc5 308 - 42 297 126676 31 0 1 179 6 3 41 chain 2916 chr22 51304566 + 42671934 42671966 MIR 256 - 120 152 226755 32 chain 2416 chr22 51304566 + 42684831 42684881 MIR3 191 - 64 115 234068 9 1 0 18 6 8 16 chain 2780 chr22 51304566 + 42746569 42746607 L1MB7 1623 + 1452 1489 229007 27 1 0 10 chain 3450 chr22 51304566 + 42877336 42877462 MLT1C 463 - 39 190 216208 24 1 2 18 61 85 22 chain 27123 chr22 51304566 + 42887521 42887822 AluYc3 301 - 0 301 95858 301 chain 79761 chr22 51304566 + 42894289 42895181 MER11D 897 - 0 897 43704 482 0 5 410 chain 2891 chr22 51304566 + 42926797 42926840 MLT1C 463 - 39 83 227188 24 1 2 18 chain 77347 chr22 51304566 + 42927171 42928120 LTR13A 966 + 17 966 44804 56 3 5 49 1 2 255 1 0 383 1 0 82 1 0 117 chain 66256 chr22 51304566 + 42928772 42929724 LTR13 1007 + 0 959 49976 73 12 10 151 1 0 4 4 5 138 8 9 81 1 2 19 6 14 143 0 1 9 20 4 22 27 41 233 chain 5239 chr22 51304566 + 42929778 42929838 MLT1C 463 - 340 400 192626 60 chain 11229 chr22 51304566 + 42941513 42941645 AluJb 308 + 4 136 155310 132 chain 38786 chr22 51304566 + 42943829 42944341 LTR6B 557 - 0 557 71031 22 0 1 33 0 1 6 0 1 87 2 0 46 0 1 272 0 15 15 7 35 22 chain 76912 chr22 51304566 + 42947540 42948527 LTR13 1007 - 0 1007 45019 31 3 1 56 0 5 98 0 1 109 0 2 12 0 6 178 5 13 22 1 2 81 8 9 308 2 0 73 chain 3907 chr22 51304566 + 42948566 42948610 MER54B 801 - 755 799 208753 44 chain 4390 chr22 51304566 + 42961015 42961068 LTR7B 505 - 64 121 202082 37 0 4 16 chain 16098 chr22 51304566 + 42961092 42961333 7SK 245 - 0 242 138068 172 50 0 11 0 51 8 chain 21742 chr22 51304566 + 42966155 42966427 AluSp 311 + 10 285 121234 126 0 4 73 1 0 72 chain 5027 chr22 51304566 + 42992876 42992937 MER41B 635 + 481 542 194859 61 chain 99905 chr22 51304566 + 43003152 43004264 SVA_B 1603 + 56 1290 36810 269 0 3 516 0 78 72 0 37 137 0 4 118 chain 28658 chr22 51304566 + 43014262 43014569 AluYa5 310 + 1 305 90493 299 3 0 5 chain 19649 chr22 51304566 + 43075483 43075898 THE1D 372 + 0 372 128253 51 3 0 23 13 14 10 1 0 38 8 9 18 29 30 25 4 20 95 59 1 38 chain 23733 chr22 51304566 + 43085385 43085675 AluSp 311 + 9 295 111867 80 4 0 206 chain 33065 chr22 51304566 + 43094662 43095080 MER41A 554 + 0 424 79105 259 6 8 141 0 4 12 chain 24494 chr22 51304566 + 43118761 43119032 AluY 311 + 27 298 107572 271 chain 2029 chr22 51304566 + 43128786 43128878 L1PA8A 6298 + 5824 5916 158258 92 chain 24372 chr22 51304566 + 43128903 43129208 AluSp 311 + 2 307 108243 121 0 2 158 2 0 24 chain 1191 chr22 51304566 + 43129208 43129262 L1PA8A 6298 + 5916 5970 158258 54 chain 5551 chr22 51304566 + 43133166 43133234 LTR38B 592 + 437 505 189558 68 chain 34218 chr22 51304566 + 43133692 43135180 MER41A 554 + 0 554 77326 30 1 0 40 4 0 123 327 0 20 7 20 24 2 3 96 327 11 61 310 5 35 0 5 50 1 2 25 1 0 4 chain 29265 chr22 51304566 + 43136490 43137023 LTR7B 505 + 0 476 87717 108 0 10 57 0 38 12 20 16 8 32 0 31 59 0 82 1 0 79 21 13 13 1 0 9 chain 5020 chr22 51304566 + 43140457 43140535 LTR47A 437 + 10 89 194930 58 6 7 14 chain 118290 chr22 51304566 + 43145974 43147297 SVA_D 2077 - 16 2077 31693 644 0 575 35 0 156 614 0 6 12 6 7 12 chain 24832 chr22 51304566 + 43155568 43155850 AluSp 311 - 7 289 105712 282 chain 22735 chr22 51304566 + 43175438 43175719 AluSp 311 - 17 301 116894 79 3 5 102 0 1 97 chain 3599 chr22 51304566 + 43285934 43285974 MER41B 635 - 86 126 213664 40 chain 14969 chr22 51304566 + 43357307 43357472 SVA_E 1901 + 1737 1901 141419 145 1 0 19 chain 118043 chr22 51304566 + 43367119 43368518 SVA_B 1603 + 49 1593 31787 550 0 154 98 2 1 13 1 0 14 4 0 42 4 0 55 8 7 154 8 10 446 chain 169548 chr22 51304566 + 43376520 43378894 SVA_E 1901 + 0 1901 22110 153 1 0 664 1 0 4 471 0 21 0 1 37 0 1 4 14 38 31 1 0 6 35 8 6 1 0 166 1 2 423 0 1 55 0 1 279 chain 29610 chr22 51304566 + 43377389 43377757 SVA_F 1814 + 664 1274 86175 41 2 122 28 1 0 24 4 1 9 0 76 116 0 1 83 0 49 60 chain 2836 chr22 51304566 + 43377928 43377963 SVA_E 1901 + 1185 1220 102107 35 chain 3298 chr22 51304566 + 43386934 43386970 MIR 256 + 101 137 218999 36 chain 24357 chr22 51304566 + 43424906 43425168 AluYa5 310 - 50 310 108338 128 2 0 132 chain 2871 chr22 51304566 + 43467311 43467343 L1MC5 759 - 485 517 227515 32 chain 14169 chr22 51304566 + 43489255 43489414 L1PA5 6144 + 5985 6144 143986 159 chain 23247 chr22 51304566 + 43498543 43498825 AluSc8 310 + 14 299 114457 118 0 3 164 chain 4996 chr22 51304566 + 43520553 43520615 MER41B 635 - 8 70 195186 62 chain 30205 chr22 51304566 + 43549338 43549655 AluYb8 318 - 0 317 84180 317 chain 4817 chr22 51304566 + 43590604 43590694 L1PB1 5432 + 5340 5424 197151 6 2 0 17 8 7 22 1 0 12 1 0 14 1 0 6 chain 10794 chr22 51304566 + 43598621 43598747 THE1D 372 + 193 319 157019 126 chain 3581 chr22 51304566 + 43621707 43621750 LTR47A 437 + 332 375 213968 43 chain 9849 chr22 51304566 + 43720847 43720987 MLT1C 463 + 12 146 161345 112 6 0 22 chain 24220 chr22 51304566 + 43744224 43744592 THE1B 368 - 5 368 109093 70 1 0 100 31 24 52 7 9 60 5 6 42 chain 22815 chr22 51304566 + 43744592 43744956 MSTA 426 + 23 426 116505 33 16 13 39 6 30 89 16 14 55 1 21 109 chain 23738 chr22 51304566 + 43746753 43747048 AluSp 311 + 10 310 111843 46 5 10 244 chain 2078 chr22 51304566 + 43887151 43887317 HAL1-2a_MD 234 - 110 164 237908 13 91 0 16 33 12 13 chain 4100 chr22 51304566 + 43895857 43895961 HAL1-2a_MD 234 - 154 234 205955 14 12 0 9 1 0 4 0 1 17 6 3 7 3 0 19 6 0 6 chain 3522 chr22 51304566 + 43900743 43900852 HAL1-2a_MD 234 - 109 224 215042 25 3 0 10 46 55 25 chain 3440 chr22 51304566 + 43911766 43911805 MER45C 884 - 715 754 216385 39 chain 3034 chr22 51304566 + 43921351 43921389 MER58C 217 - 31 69 224319 38 chain 21206 chr22 51304566 + 43934257 43934555 AluSc 308 - 4 297 123193 26 9 4 123 0 3 7 8 5 125 chain 9009 chr22 51304566 + 43948340 43948472 L1PA11 4918 - 401 524 165545 9 4 0 20 1 0 14 2 0 67 2 0 13 chain 86016 chr22 51304566 + 43954824 43955908 L1PA8 5853 + 4772 5853 41148 5 0 2 230 0 2 553 6 5 31 10 8 70 14 12 50 2 1 18 3 2 92 chain 21981 chr22 51304566 + 44007114 44007394 L1PREC2 3366 + 2457 2737 120312 280 chain 19865 chr22 51304566 + 44018170 44018450 AluSq2 311 + 8 288 127607 131 32 32 117 chain 19214 chr22 51304566 + 44044154 44044492 L1PA16 3655 + 3306 3619 129492 110 1 0 22 0 1 109 68 48 7 5 0 16 chain 25875 chr22 51304566 + 44046062 44046423 THE1B 368 + 0 368 100551 44 0 15 113 10 9 19 6 0 94 1 0 74 chain 120505 chr22 51304566 + 44046423 44047997 THE1B-int 1605 + 0 1600 30875 25 3 0 5 1 4 231 7 9 156 2 27 451 65 64 628 chain 26195 chr22 51304566 + 44048002 44048360 THE1B 368 + 0 368 99222 44 0 15 10 0 1 104 9 8 17 4 0 95 1 0 74 chain 20372 chr22 51304566 + 44118887 44119145 Tigger1 2417 + 1635 1893 125989 258 chain 87137 chr22 51304566 + 44123789 44124900 L1PA8 5853 - 0 1108 40719 93 1 0 19 2 1 51 2 1 9 2 1 49 5 6 15 2 0 39 6 5 67 0 1 487 0 2 262 chain 4679 chr22 51304566 + 44125276 44125331 MSTB 430 - 375 430 198765 55 chain 20215 chr22 51304566 + 44145269 44145552 MER1B 344 - 0 281 126483 58 9 13 53 4 0 5 3 0 27 0 1 124 chain 29289 chr22 51304566 + 44160090 44160527 L1PA16 3655 - 63 511 87624 11 8 5 77 0 1 50 0 14 65 6 7 29 4 0 43 2 0 16 0 1 67 1 5 22 0 1 24 3 0 5 0 1 4 chain 2881 chr22 51304566 + 44188957 44188998 Eulor6D 128 + 66 106 227357 26 1 0 14 chain 148296 chr22 51304566 + 44266203 44268380 L1PB1 5432 - 13 2049 24845 15 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 19 16 6 6 3 0 16 1 0 39 5 4 18 1 0 39 0 1 11 164 34 20 1 0 11 1 0 93 0 1 379 0 1 46 5 6 79 14 18 5 1 0 31 9 7 148 0 6 46 1 2 88 0 22 186 6 7 36 0 1 158 23 2 352 chain 120361 chr22 51304566 + 44269626 44271169 THE1C-int 1605 + 0 1605 30917 14 2 1 76 0 2 44 2 56 247 5 12 58 0 4 621 7 11 76 10 2 381 chain 23109 chr22 51304566 + 44271169 44271487 THE1C 375 + 0 316 115099 126 0 1 120 18 15 54 chain 88941 chr22 51304566 + 44299802 44300807 LTR13 1007 - 0 1007 40029 74 0 2 931 chain 39621 chr22 51304566 + 44308448 44308941 MER41A 554 + 0 497 69862 319 1 0 4 0 1 144 0 5 17 1 0 7 chain 25126 chr22 51304566 + 44309758 44310072 AluSc5 308 - 6 308 104149 13 12 0 289 chain 89429 chr22 51304566 + 44343375 44344381 LTR13 1007 - 0 1007 39831 867 0 1 139 chain 40834 chr22 51304566 + 44400189 44400689 HERV1_LTRc 486 + 0 486 68126 215 13 0 68 0 3 143 5 0 26 0 1 30 chain 24556 chr22 51304566 + 44405688 44405985 AluSg7 307 - 10 307 107220 297 chain 3160 chr22 51304566 + 44416012 44416047 MER21B 843 - 178 213 221749 35 chain 16405 chr22 51304566 + 44461377 44461721 L1PB1 5432 - 10 318 137190 30 1 0 22 1 0 24 2 0 14 1 0 5 3 1 11 1 0 7 16 6 6 1 0 16 1 0 40 6 5 14 2 1 52 8 0 9 22 17 4 1 0 24 chain 27935 chr22 51304566 + 44497007 44497317 AluYf4 310 + 0 310 93225 310 chain 4485 chr22 51304566 + 44499753 44499808 MLT1D 503 + 337 393 200968 22 0 1 33 chain 40905 chr22 51304566 + 44504350 44504791 LTR7Y 441 - 0 441 68025 441 chain 26002 chr22 51304566 + 44505750 44506021 AluYa5 310 + 39 310 100007 271 chain 3594 chr22 51304566 + 44575967 44576247 LTR33 499 + 165 448 213752 14 48 46 36 159 164 23 chain 10711 chr22 51304566 + 44605507 44605743 L1MB3 1562 - 18 192 157365 20 1 0 83 81 20 51 chain 2458 chr22 51304566 + 44607278 44607328 L1MB3 1562 - 16 68 233611 13 9 11 28 chain 2486 chr22 51304566 + 44607359 44607392 L1MB3 1562 - 98 129 233258 25 2 0 6 chain 2899 chr22 51304566 + 44623508 44623548 MLT1G1 539 - 247 284 227055 13 3 0 24 chain 9595 chr22 51304566 + 44628295 44628477 THE1C 375 + 0 178 162623 15 2 0 32 0 6 17 15 16 20 21 12 60 chain 21997 chr22 51304566 + 44629100 44629417 L1PA8 5853 - 0 312 120244 93 1 0 19 2 1 61 1 0 65 11 14 20 5 1 15 1 0 23 chain 4162 chr22 51304566 + 44631810 44631855 MLT1A1 405 + 292 337 205074 45 chain 5327 chr22 51304566 + 44634632 44634748 L1MD1 2063 - 166 300 191751 28 32 54 40 4 0 12 chain 21784 chr22 51304566 + 44647401 44647740 THE1B 368 - 30 368 121084 28 0 4 13 1 0 99 6 0 12 49 51 131 chain 3328 chr22 51304566 + 44653416 44653468 L1MC2 1988 + 1945 1988 218436 7 9 0 36 chain 30567 chr22 51304566 + 44793840 44794276 MLT2A1 477 - 0 477 83269 48 44 81 24 1 0 150 1 5 28 0 1 140 chain 6178 chr22 51304566 + 44817479 44817650 L1PB1 5432 - 12 167 183759 16 1 0 13 1 0 21 1 0 10 0 7 7 27 22 21 11 1 6 4 0 16 1 0 15 chain 7805 chr22 51304566 + 44847290 44847408 LTR19A 502 + 0 135 172282 30 13 30 75 chain 13235 chr22 51304566 + 44895730 44895931 THE1B 368 + 172 368 147339 75 15 8 8 0 1 8 7 8 88 chain 13638 chr22 51304566 + 44907156 44907311 SVA_B 1603 + 1451 1603 145824 146 3 0 6 chain 19256 chr22 51304566 + 44910689 44910965 AluSz6 309 + 11 279 129362 33 12 5 23 9 9 52 1 0 146 chain 8146 chr22 51304566 + 44950166 44950371 Tigger1 2417 + 1406 2400 170255 67 21 38 20 33 803 21 12 14 31 chain 45221 chr22 51304566 + 45007933 45008492 LTR10E 629 - 68 629 62804 266 2 1 66 0 2 60 0 2 148 1 0 16 chain 14828 chr22 51304566 + 45057940 45058120 L1PA5 6144 - 0 195 141850 94 0 14 39 0 1 47 chain 2594 chr22 51304566 + 45117242 45117349 MER51A 677 - 335 478 231769 29 58 95 4 1 0 15 chain 8061 chr22 51304566 + 45137221 45137456 L1MB2 1706 + 1217 1433 170689 98 122 103 15 chain 30468 chr22 51304566 + 45143158 45143889 MER41B 635 + 0 428 83492 128 1 2 33 316 11 178 1 0 8 6 8 60 chain 815 chr22 51304566 + 45145102 45145218 LTR23 429 - 91 208 146686 55 5 6 56 chain 18612 chr22 51304566 + 45145546 45146237 L1PA17 2846 + 2373 2697 131183 20 1 0 110 4 0 14 7 6 12 308 7 28 8 0 30 2 1 31 1 0 8 14 13 11 49 0 33 chain 731 chr22 51304566 + 45146905 45147009 LTR23 429 - 212 316 146686 104 chain 5393 chr22 51304566 + 45165745 45165815 LTR8A 794 - 151 220 191055 16 1 0 53 chain 40844 chr22 51304566 + 45173935 45174602 L1PB1 5432 - 12 650 68104 16 5 6 7 1 0 21 1 0 24 2 0 11 12 9 29 14 1 16 7 6 38 2 5 10 3 1 53 2 0 5 8 4 11 1 0 9 1 0 24 8 3 5 0 3 321 chain 22937 chr22 51304566 + 45237962 45238240 AluSc 308 + 6 283 115919 251 2 1 25 chain 11062 chr22 51304566 + 45260381 45260545 MER50 708 - 69 226 155959 16 17 10 131 chain 6680 chr22 51304566 + 45264391 45264474 MER50 708 - 271 356 179829 9 0 2 74 chain 3680 chr22 51304566 + 45274244 45274286 MER44C 733 + 68 110 212241 42 chain 4894 chr22 51304566 + 45280171 45280331 HAL1-2a_MD 234 + 10 213 196342 20 9 57 18 33 0 15 15 6 20 2 0 8 3 42 17 chain 23777 chr22 51304566 + 45306297 45306631 THE1B 368 + 0 348 111610 44 11 26 37 0 1 35 0 2 19 5 4 122 3 0 58 chain 4044 chr22 51304566 + 45308232 45308276 THE1B 368 + 0 44 206745 44 chain 9371 chr22 51304566 + 45308324 45308455 THE1B 368 + 108 241 163710 55 1 0 4 2 1 46 0 4 23 chain 10701 chr22 51304566 + 45308455 45308582 THE1B 368 + 244 368 157413 47 3 0 77 chain 11878 chr22 51304566 + 45315171 45315371 MER30 238 + 30 238 152706 44 0 2 16 29 43 95 8 0 8 chain 24799 chr22 51304566 + 45353783 45354075 AluSp 311 - 13 304 105896 166 2 0 34 0 1 90 chain 24576 chr22 51304566 + 45357778 45358143 L1PA16 3655 - 189 551 107104 36 13 14 106 21 19 56 1 0 31 1 0 100 chain 3631 chr22 51304566 + 45381744 45381827 HAL1-2a_MD 234 + 0 216 213145 17 4 88 18 1 53 16 4 1 23 chain 10236 chr22 51304566 + 45421693 45421808 L1PA6 6164 + 6047 6162 159443 115 chain 2906 chr22 51304566 + 45424412 45424511 MIR 256 - 129 232 226935 25 54 58 20 chain 28965 chr22 51304566 + 45448493 45448871 MER4A1 472 + 0 393 89157 29 0 1 177 0 10 14 10 14 148 chain 18654 chr22 51304566 + 45449906 45450198 THE1B 368 + 0 306 131075 54 7 16 43 0 1 55 1 0 21 3 5 4 0 1 9 1 5 11 6 5 10 1 0 66 chain 13776 chr22 51304566 + 45482048 45482221 THE1D 372 - 198 372 145348 13 0 1 160 chain 26310 chr22 51304566 + 45493232 45493572 THE1B 368 + 0 341 98788 71 1 2 34 2 3 65 1 0 166 chain 19874 chr22 51304566 + 45515299 45515589 THE1B 368 - 61 368 127580 63 17 30 15 0 1 14 1 0 5 0 1 4 1 0 31 0 4 139 chain 24092 chr22 51304566 + 45526316 45526887 LTR7B 505 + 0 505 109787 108 0 10 46 16 33 26 0 129 21 222 0 68 14 13 20 0 1 30 chain 11878 chr22 51304566 + 45527602 45527767 L1PA8 5853 - 1 165 152704 91 2 1 19 2 1 45 0 1 6 chain 28811 chr22 51304566 + 45557990 45558425 LTR7Y 441 + 0 441 89836 103 12 3 42 78 93 200 chain 77117 chr22 51304566 + 45565286 45566253 LTR13A 966 + 0 966 44906 122 5 6 150 4 0 421 0 1 212 14 15 39 chain 38609 chr22 51304566 + 45584621 45585166 LTR14 556 + 0 556 71282 257 0 5 18 60 57 32 0 3 20 0 4 42 2 0 30 1 5 83 chain 24714 chr22 51304566 + 45729276 45729573 AluY 311 + 3 300 106358 129 0 1 143 6 5 19 chain 3885 chr22 51304566 + 45752934 45752988 MER4C 627 - 511 563 209100 32 1 0 16 1 0 4 chain 44835 chr22 51304566 + 45770307 45770888 MER4-int 2692 + 2074 2692 63251 69 0 2 49 0 10 78 0 1 46 1 0 151 2 0 4 0 6 30 0 5 12 0 16 139 chain 37557 chr22 51304566 + 45770896 45771370 MER4A1 472 + 0 472 72742 159 1 0 101 6 5 207 chain 20025 chr22 51304566 + 45802992 45803340 MER4A 717 + 0 332 127062 68 86 68 138 0 2 56 chain 95048 chr22 51304566 + 45832425 45833518 LTR12C 1709 + 0 1709 38079 650 0 485 89 0 4 163 0 119 166 0 8 25 chain 57153 chr22 51304566 + 45859703 45860402 THE1A-int 1579 - 851 1553 54432 218 0 3 481 chain 43126 chr22 51304566 + 45861708 45862252 THE1A-int 1579 - 1003 1551 65263 214 0 3 310 0 1 20 chain 22541 chr22 51304566 + 45864142 45864467 MER4A 717 + 1 537 117844 92 4 178 16 3 0 73 7 47 130 chain 29190 chr22 51304566 + 45875029 45875350 AluYb8 318 - 3 318 88104 183 6 0 132 chain 23242 chr22 51304566 + 45879322 45879648 MER83B 357 + 11 328 114484 118 30 21 178 chain 21354 chr22 51304566 + 45882589 45882935 THE1B 368 - 0 360 122671 106 3 20 12 4 3 13 0 4 7 0 1 9 24 17 6 1 0 53 10 11 98 chain 20863 chr22 51304566 + 45886350 45886620 AluSg7 307 - 36 307 124417 129 10 11 131 chain 5860 chr22 51304566 + 45932102 45932242 L1MB3 1562 + 1389 1501 186584 27 53 25 60 chain 33582 chr22 51304566 + 45951086 45951591 MLT2A1 477 - 0 477 78271 6 0 4 27 9 3 17 8 0 18 8 0 9 3 0 8 7 1 76 0 1 25 5 4 74 0 1 23 11 9 171 chain 465599 chr22 51304566 + 45951591 45957562 HERVL-int 5654 - 0 5654 8201 99 14 19 121 4 3 32 314 0 8 0 3 56 8 7 68 17 13 519 1 0 697 15 9 495 1 0 487 0 2 37 0 1 54 1 0 18 0 4 72 6 4 160 17 0 102 3 4 109 1 0 118 5 8 40 0 1 4 1 0 264 0 1 110 0 2 103 0 1 821 1 3 259 0 8 39 8 0 438 0 3 3 0 2 129 1 3 91 chain 33153 chr22 51304566 + 45957562 45958000 MLT2A1 477 - 0 477 78983 36 8 44 9 0 1 4 1 0 181 1 2 20 11 9 154 0 4 13 chain 4832 chr22 51304566 + 46003118 46003175 MER21C 908 + 589 646 197001 57 chain 24447 chr22 51304566 + 46016556 46016933 THE1D 372 - 0 372 107825 32 1 0 146 35 41 100 12 0 36 0 2 15 chain 4100 chr22 51304566 + 46018496 46018542 MER52C 1267 + 1007 1053 205951 46 chain 37584 chr22 51304566 + 46019193 46019621 L1PA6 6164 - 3 432 72706 137 0 1 291 chain 25783 chr22 51304566 + 46049485 46049779 AluSc5 308 - 12 308 100947 21 0 2 273 chain 3926 chr22 51304566 + 46072918 46072961 MER3 215 - 158 201 208467 43 chain 24033 chr22 51304566 + 46090928 46091221 AluY 311 + 0 299 110146 80 0 6 40 0 1 111 1 0 61 chain 25599 chr22 51304566 + 46093522 46093801 AluYf5 307 - 20 299 101735 279 chain 24845 chr22 51304566 + 46101320 46101613 AluSg7 307 - 16 307 105650 159 2 0 132 chain 6494 chr22 51304566 + 46111444 46111522 MER30 238 + 160 238 181307 78 chain 22352 chr22 51304566 + 46148620 46148895 AluSp 311 - 14 293 118692 68 1 6 91 1 0 114 chain 2716 chr22 51304566 + 46169168 46169207 L1MD 993 - 893 929 229936 8 3 0 28 chain 16969 chr22 51304566 + 46210633 46210899 MER1B 344 + 66 344 135670 14 16 23 113 4 0 36 12 22 5 2 0 6 0 1 58 chain 29252 chr22 51304566 + 46249666 46249975 AluYb8 318 + 0 309 87782 309 chain 12630 chr22 51304566 + 46256781 46256936 L1PA2 6032 + 5870 6032 149727 13 1 8 141 chain 4359 chr22 51304566 + 46389116 46390020 HAL1-2a_MD 234 - 127 229 202462 19 467 5 20 75 0 6 14 2 14 253 0 36 chain 3343 chr22 51304566 + 46389182 46389274 HAL1-2a_MD 234 - 151 220 218190 17 2 11 17 3 0 9 29 0 15 chain 20595 chr22 51304566 + 46415269 46415609 THE1D 372 + 0 332 125316 53 37 25 33 1 2 52 26 28 97 0 1 41 chain 5040 chr22 51304566 + 46418562 46418627 MER3 215 - 56 121 194725 65 chain 17734 chr22 51304566 + 46557266 46557486 AluSc 308 + 57 284 133609 89 4 9 106 0 2 21 chain 20989 chr22 51304566 + 46580488 46580765 AluSz6 309 + 11 296 123961 40 6 14 231 chain 5417 chr22 51304566 + 46604688 46604796 L1MA7 2200 - 285 395 190823 42 21 18 5 0 3 6 0 3 8 1 0 25 chain 21786 chr22 51304566 + 46605966 46606226 AluSp 311 + 42 302 121077 260 chain 23960 chr22 51304566 + 46660109 46660457 THE1A 353 - 0 353 110569 219 31 32 53 4 10 26 2 0 13 chain 122782 chr22 51304566 + 46660462 46662316 THE1A-int 1579 - 12 1579 30122 5 1 0 74 0 1 81 310 0 31 0 1 50 0 1 414 0 1 395 0 1 17 2 7 244 0 11 117 0 3 113 chain 9912 chr22 51304566 + 46663134 46663285 L1MB5 1630 - 964 1118 161006 55 4 5 66 4 6 22 chain 11649 chr22 51304566 + 46671995 46672277 MLT2D 439 - 4 315 153702 22 19 41 11 2 0 56 30 0 7 24 55 29 14 19 44 0 3 24 chain 2686 chr22 51304566 + 46687911 46688026 MLT1A0 366 - 72 186 230377 21 73 72 21 chain 18772 chr22 51304566 + 46729063 46729322 MER4A 717 + 159 420 130765 91 30 32 138 chain 6661 chr22 51304566 + 46730193 46730276 MER65A 464 + 329 412 179991 83 chain 10460 chr22 51304566 + 46730581 46730761 MER4B 649 - 88 264 158434 27 3 0 6 0 3 10 2 0 54 1 0 8 3 7 21 7 2 38 chain 22370 chr22 51304566 + 46799168 46799447 AluY 311 + 5 276 118624 128 9 1 142 chain 17931 chr22 51304566 + 46806851 46807087 AluSc 308 + 29 271 133029 68 3 0 5 0 10 145 1 0 14 chain 21388 chr22 51304566 + 46833379 46833665 AluSx1 309 + 9 298 122552 66 2 7 155 6 3 19 10 11 28 chain 23097 chr22 51304566 + 46838706 46839016 AluY 311 + 0 299 115156 133 20 14 135 5 0 17 chain 21625 chr22 51304566 + 46889476 46889784 THE1B 368 + 0 310 121677 145 1 0 16 1 2 38 0 1 7 1 5 18 1 0 8 1 0 61 1 0 9 chain 5264 chr22 51304566 + 46892115 46892181 Tigger3b 1229 - 538 608 192376 36 0 4 30 chain 55191 chr22 51304566 + 46911772 46912382 L1PA5 6144 + 5402 6012 55590 610 chain 25915 chr22 51304566 + 46940077 46940367 AluY 311 + 5 295 100352 290 chain 3266 chr22 51304566 + 46963147 46963185 MSTD 398 - 226 264 219654 38 chain 38105 chr22 51304566 + 46967229 46967753 LTR10E 629 + 0 548 71975 15 0 1 30 0 3 106 23 19 62 1 0 4 0 1 29 1 27 27 1 0 55 1 0 61 0 1 93 1 0 14 chain 11489 chr22 51304566 + 47003116 47003248 L1PA6 6164 + 6029 6161 154337 132 chain 24007 chr22 51304566 + 47042646 47043001 THE1B 368 - 0 368 110290 48 3 4 98 9 10 39 1 0 25 17 14 71 0 15 44 chain 3370 chr22 51304566 + 47107445 47107481 L1PA5 6144 - 148 184 217669 36 chain 23190 chr22 51304566 + 47139294 47139574 AluY 311 + 16 298 114723 92 0 1 23 0 1 165 chain 22411 chr22 51304566 + 47139747 47140028 AluSq2 311 + 13 294 118435 131 3 0 7 0 3 140 chain 13921 chr22 51304566 + 47167258 47167948 L1PB1 5432 - 13 327 144855 15 1 0 13 1 0 21 1 0 17 2 7 15 45 8 15 45 31 29 314 0 12 1 0 13 4 3 53 2 0 10 4 0 10 1 0 13 1 0 20 3 0 9 chain 440474 chr22 51304566 + 47213192 47218712 L1PA8A 6298 - 7 5545 9043 39 0 1 36 17 2 25 1 0 6 8 12 295 8 6 295 0 2 81 0 3 12 0 4 434 15 11 94 0 12 40 0 1 24 0 5 152 1 0 6 0 1 7 12 14 291 0 1 253 5 0 44 0 2 4 1 0 204 0 1 12 1 0 4 0 1 429 0 4 7 0 1 143 1 0 249 0 1 49 1 5 207 9 13 236 8 0 51 6 8 7 2 0 86 1 0 211 15 2 133 6 8 22 1 13 210 1 0 610 2 1 6 1 0 4 0 3 19 1 4 359 chain 7231 chr22 51304566 + 47270769 47270890 L1PA11 4918 - 538 662 175884 55 1 0 11 16 20 38 chain 4928 chr22 51304566 + 47273037 47273156 MIRc 230 + 69 197 195953 37 45 54 37 chain 22324 chr22 51304566 + 47356565 47356873 AluY 311 + 5 305 118801 101 13 12 14 0 1 98 16 8 66 chain 8009 chr22 51304566 + 47423250 47423451 L1PB1 5432 - 10 189 170990 18 1 0 13 1 0 20 2 1 21 63 47 6 2 0 15 1 0 38 chain 24683 chr22 51304566 + 47495346 47495632 AluSp 311 - 17 303 106531 286 chain 23093 chr22 51304566 + 47496357 47496703 THE1B 368 + 0 368 115177 42 0 6 8 0 9 12 0 14 81 12 11 19 5 0 85 7 6 75 chain 55380 chr22 51304566 + 47499647 47501041 MER4E1 777 + 0 773 55471 25 1 0 52 4 0 123 2 1 19 0 5 43 302 0 59 0 4 22 314 3 17 0 1 91 0 1 68 37 24 215 chain 3325 chr22 51304566 + 47563611 47563650 MIR 256 - 107 147 218475 13 0 1 26 chain 146575 chr22 51304566 + 47579200 47581831 L1MA1 4479 + 279 4190 25077 269 4 3 149 3 7 47 343 1648 143 3 0 10 1 0 24 40 54 16 0 1 17 2 1 93 19 17 26 1 0 50 16 12 92 1 0 27 2 0 40 4 3 130 2 0 17 4 0 24 0 1 51 1 0 12 5 0 8 14 16 23 6 1 77 3 0 130 2 0 26 1 2 169 1 0 24 2 0 13 0 1 4 0 2 67 1 0 19 3 1 16 11 17 68 1 0 5 3 0 67 1 2 25 8 13 10 10 9 27 2 0 37 1 0 9 1 0 4 26 17 18 chain 25115 chr22 51304566 + 47612654 47612939 L1PA4 6152 - 6 290 104202 248 1 0 36 chain 13736 chr22 51304566 + 47636781 47636950 L1PA5 6144 - 1 168 145483 9 2 0 158 chain 19584 chr22 51304566 + 47644288 47644643 THE1D 372 + 0 349 128420 51 9 0 18 35 36 39 0 1 21 32 34 25 1 0 124 chain 4158 chr22 51304566 + 47648228 47648274 MER66B 489 + 417 463 205126 46 chain 59946 chr22 51304566 + 47657675 47658345 L1PA5 6144 + 5460 6131 52847 58 0 1 612 chain 24579 chr22 51304566 + 47660916 47661265 THE1B 368 - 0 361 107086 75 1 0 22 1 0 5 0 1 70 1 0 12 1 2 9 8 6 107 0 15 37 chain 63929 chr22 51304566 + 47721670 47722403 L1PA5 6144 - 9 744 51038 662 2 1 40 0 3 29 chain 12045 chr22 51304566 + 47735098 47735245 MLT2A2 560 + 413 560 152009 147 chain 503457 chr22 51304566 + 47741537 47747403 L1PA5 6144 - 0 6141 6641 252 0 1 4 1 0 193 4 1 258 1 0 134 0 4 675 1 0 1347 4 6 14 0 4 72 0 1 13 3 4 572 1 3 7 0 230 776 0 3 163 0 5 325 5 8 44 0 20 139 0 1 85 35 30 25 3 0 20 1 0 464 14 13 94 1 15 116 chain 26425 chr22 51304566 + 47826742 47827046 AluY 311 + 4 308 98321 304 chain 12290 chr22 51304566 + 47835792 47835939 SVA_F 1814 - 1111 1261 151044 39 0 3 108 chain 24996 chr22 51304566 + 47863700 47864057 THE1B 368 - 0 368 104816 117 47 59 23 1 0 169 chain 114501 chr22 51304566 + 47883280 47884619 LTR12C 1709 - 0 1708 32945 146 1 0 335 0 4 28 0 366 829 chain 3820 chr22 51304566 + 47923447 47923487 MER31A 484 - 417 457 210094 40 chain 35243 chr22 51304566 + 47933217 47933639 L1PA10 4194 + 3576 4015 75870 76 0 4 47 0 9 108 0 4 191 chain 8441 chr22 51304566 + 47945662 47945756 L1PA4 6152 - 3 97 168615 94 chain 22732 chr22 51304566 + 47955323 47955724 MLT2A2 560 + 0 515 116913 103 3 0 64 66 65 60 0 98 16 10 21 30 1 6 39 0 4 9 chain 3075 chr22 51304566 + 47962819 47962855 MIR 256 - 122 158 223427 36 chain 10721 chr22 51304566 + 47963878 47964126 MER65A 464 + 1 256 157317 46 43 42 15 37 51 6 6 0 95 chain 13806 chr22 51304566 + 47972003 47972199 MER47A 366 - 132 330 145249 103 0 2 70 2 5 6 3 0 12 chain 30007 chr22 51304566 + 47974070 47974515 MER4A1 472 + 0 472 84784 34 7 0 11 11 11 43 0 2 129 24 45 91 0 11 95 chain 194514 chr22 51304566 + 47978183 47981151 MER4-int 2692 + 37 2691 19627 62 1 0 8 0 1 110 0 1 26 0 1 298 1 10 38 3 0 34 0 1 238 323 0 48 5 6 198 24 0 12 1 13 98 16 34 38 3 0 36 10 0 11 0 5 47 0 1 49 51 47 128 1 3 123 1 0 4 0 1 97 0 1 86 3 1 53 1 0 62 0 4 190 0 1 167 8 6 250 0 1 5 chain 10036 chr22 51304566 + 47988218 47988348 MSTA 426 + 276 426 160398 20 1 21 109 chain 7843 chr22 51304566 + 47998968 47999062 MSTA 426 + 0 93 172054 71 1 0 22 chain 4820 chr22 51304566 + 47999062 47999117 MSTA 426 + 16 71 190676 55 chain 5433 chr22 51304566 + 47999133 47999195 MSTA 426 + 9 71 190675 62 chain 22860 chr22 51304566 + 48034960 48035224 AluYa5 310 + 53 310 116289 70 3 0 3 4 0 184 chain 2258 chr22 51304566 + 48051913 48051966 HAL1-2a_MD 234 + 0 41 235891 17 7 1 10 6 0 13 chain 27286 chr22 51304566 + 48054406 48054763 THE1B 368 - 0 368 95323 74 1 0 126 2 0 109 0 15 19 2 1 24 chain 30294 chr22 51304566 + 48054763 48055159 THE1B-int 1605 - 0 397 83949 9 0 1 255 8 7 4 0 1 120 chain 25230 chr22 51304566 + 48069624 48069967 L1PA8 5853 + 5517 5853 103586 47 1 0 45 2 0 70 1 0 15 4 3 43 2 1 19 1 0 93 chain 6484 chr22 51304566 + 48084147 48084308 MER57E2 345 - 111 271 181368 63 72 71 26 chain 19949 chr22 51304566 + 48102641 48103124 LTR1 825 - 341 825 127304 28 0 3 12 3 0 49 156 115 20 30 72 143 1 2 4 1 0 36 chain 21765 chr22 51304566 + 48109150 48109408 AluSp 311 - 42 300 121155 258 chain 25918 chr22 51304566 + 48190058 48190367 AluSp 311 + 2 306 100343 296 5 0 8 chain 24700 chr22 51304566 + 48219384 48219743 THE1D 372 + 18 372 106439 34 9 0 99 18 23 14 6 5 179 chain 14844 chr22 51304566 + 48220176 48220340 L1PA4 6152 + 5987 6151 141798 164 chain 10951 chr22 51304566 + 48222842 48223033 L1PA8 5853 + 5663 5853 156395 16 1 0 11 1 0 50 2 1 13 15 14 36 6 9 40 chain 21785 chr22 51304566 + 48244788 48245188 MER1A 529 + 59 458 121081 21 9 13 17 97 92 256 chain 2884 chr22 51304566 + 48253842 48253873 L1PA6 6164 - 5 36 227276 31 chain 27172 chr22 51304566 + 48277145 48277445 L1PA3long 6157 - 0 300 95689 300 chain 3361 chr22 51304566 + 48289543 48289581 MER58A 224 + 168 206 217870 38 chain 33131 chr22 51304566 + 48312273 48312704 MLT2A1 477 - 68 476 79015 7 12 0 11 6 0 6 4 0 181 0 1 20 0 1 12 4 1 168 chain 19342 chr22 51304566 + 48321918 48322286 THE1B 368 - 0 368 129105 13 5 7 20 8 0 88 1 0 6 67 72 141 5 7 14 chain 13828 chr22 51304566 + 48332453 48332622 MLT2A2 560 - 391 560 145146 169 chain 20718 chr22 51304566 + 48338006 48338363 THE1B 368 - 4 368 124900 121 68 74 52 10 11 106 chain 24175 chr22 51304566 + 48338477 48338814 THE1A 353 - 12 346 109347 227 8 7 10 18 16 74 chain 30636 chr22 51304566 + 48347000 48347403 MLT2A1 477 - 78 477 83147 14 4 0 74 0 1 133 11 10 167 chain 5582 chr22 51304566 + 48418744 48418816 MLT1D 503 + 429 501 189255 72 chain 70055 chr22 51304566 + 48455043 48455863 L1PA7 6471 + 5641 6461 48369 208 2 0 202 1 0 90 0 3 317 chain 3935 chr22 51304566 + 48465068 48465114 MLT1B 390 - 84 130 208337 46 chain 43533 chr22 51304566 + 48481740 48482326 LTR71B 605 - 5 605 64763 374 0 2 67 20 34 45 6 4 74 chain 25974 chr22 51304566 + 48522867 48523207 L1PA8 5853 - 6 339 100123 86 2 1 19 3 1 38 0 1 13 4 3 6 1 0 71 2 0 46 1 0 48 chain 29973 chr22 51304566 + 48544520 48544937 L1PA8 5853 - 9 421 84893 101 1 0 31 0 1 4 1 0 15 16 14 70 2 0 18 7 8 18 1 0 132 chain 41208 chr22 51304566 + 48554669 48555224 L1PA8 5853 - 0 537 67641 92 2 1 16 1 0 47 12 10 5 1 0 74 3 1 45 2 1 171 10 0 74 chain 14685 chr22 51304566 + 48591790 48591979 THE1B 368 + 172 356 142309 28 4 0 93 1 0 63 chain 16313 chr22 51304566 + 48592636 48592982 THE1B 368 + 0 357 137455 69 0 1 38 29 34 25 70 76 63 18 17 34 chain 7417 chr22 51304566 + 48612034 48612220 MER58A 224 + 42 224 174675 39 72 68 32 1 0 8 0 1 34 chain 3284 chr22 51304566 + 48693674 48693709 THE1D 372 + 337 372 219287 35 chain 13966 chr22 51304566 + 48721932 48722079 AluYg6 310 + 156 303 144687 147 chain 19889 chr22 51304566 + 48751819 48752123 L1PA8 5853 - 0 304 127519 92 6 5 15 2 1 47 1 0 14 5 11 59 2 0 45 1 0 15 chain 12638 chr22 51304566 + 48772507 48772683 LTR10C 591 - 418 591 149695 125 16 13 35 chain 7926 chr22 51304566 + 48779973 48780151 L1MC1 2226 + 1866 2023 171467 17 11 5 29 1 0 34 12 7 22 21 12 31 chain 5947 chr22 51304566 + 48783689 48783773 L1PA16 3655 + 3490 3576 185715 67 1 3 16 chain 6617 chr22 51304566 + 49000989 49001155 HAL1-2a_MD 234 - 109 218 180326 15 3 0 29 66 0 15 0 12 38 chain 5388 chr22 51304566 + 49005741 49005826 MLT1C 463 - 307 393 191101 32 11 12 42 chain 20909 chr22 51304566 + 49079520 49079874 THE1D 372 + 2 360 124247 155 57 64 44 2 0 40 8 7 48 chain 37764 chr22 51304566 + 49112022 49112496 L1PA8 5853 + 5386 5853 72471 178 1 0 46 2 0 69 1 0 12 1 0 49 2 1 19 2 1 92 chain 23100 chr22 51304566 + 49117802 49118069 L1PA7 6471 - 450 717 115145 267 chain 36900 chr22 51304566 + 49118069 49118524 L1PA7 6471 + 6013 6469 73658 40 4 2 149 1 0 108 0 2 117 0 1 25 0 1 11 chain 12429 chr22 51304566 + 49219415 49219640 MER30 238 - 0 238 150535 39 3 0 33 2 0 11 8 37 20 14 6 13 1 0 61 2 0 18 chain 82853 chr22 51304566 + 49303472 49304425 LTR13A 966 - 0 966 42397 63 0 4 45 1 0 355 0 5 159 1 2 192 0 3 97 0 1 40 chain 5512 chr22 51304566 + 49317826 49318137 L1MCb 1641 + 27 335 189919 5 2 0 39 181 183 28 31 28 25 chain 33921 chr22 51304566 + 49331701 49332199 MER75 514 - 0 495 77737 20 5 6 168 6 3 202 32 31 65 chain 18220 chr22 51304566 + 49357487 49357841 MSTA 426 - 26 426 132281 55 26 45 34 31 28 10 0 2 8 0 2 11 4 0 42 29 59 104 chain 9523 chr22 51304566 + 49368192 49368378 L1PB1 5432 + 5122 5296 162963 16 1 0 9 1 0 10 17 11 44 15 13 11 1 0 44 1 0 16 chain 566918 chr22 51304566 + 49381573 49387604 L1HS 6032 - 0 6032 94 5362 0 1 669 chain 14669 chr22 51304566 + 49395101 49395473 THE1B 368 - 0 368 142364 38 48 24 63 55 58 7 0 2 23 44 46 64 0 13 30 chain 19157 chr22 51304566 + 49434202 49434453 L1PA7 6471 - 3 260 129657 139 0 4 99 1 3 12 chain 27517 chr22 51304566 + 49445129 49445499 THE1C 375 - 6 375 94608 19 1 0 211 0 4 11 3 0 67 1 0 57 chain 9459 chr22 51304566 + 49448979 49449092 THE1C 375 - 262 375 163282 113 chain 10795 chr22 51304566 + 49461847 49462071 MER30 238 - 0 238 157013 43 3 0 66 5 0 6 45 67 31 7 0 6 0 7 12 chain 6612 chr22 51304566 + 49520547 49520657 LTR48B 642 - 471 585 180365 62 18 22 30 chain 15641 chr22 51304566 + 49522823 49523064 L1PA8 5853 + 5608 5850 139461 58 2 0 12 2 1 8 0 6 47 2 1 19 14 13 77 chain 3171 chr22 51304566 + 49525519 49525554 MADE1 96 + 53 88 221539 35 chain 7726 chr22 51304566 + 49563695 49563784 MSTB 430 + 320 409 172739 89 chain 18812 chr22 51304566 + 49567236 49567560 THE1B 368 - 19 368 130645 38 1 0 68 35 45 77 13 14 40 8 23 44 chain 9669 chr22 51304566 + 49567565 49567673 THE1B-int 1605 - 5 113 162254 108 chain 19375 chr22 51304566 + 49567787 49568121 THE1B 368 - 0 368 129009 125 35 45 14 13 12 49 9 19 37 8 23 44 chain 8889 chr22 51304566 + 49584384 49584490 THE1B 368 - 262 368 166190 106 chain 29158 chr22 51304566 + 49626552 49626862 AluYg6 310 - 0 310 88266 310 chain 3145 chr22 51304566 + 49646142 49646212 L1MA3 4352 - 25 92 222063 14 7 6 19 2 1 5 1 0 22 chain 20758 chr22 51304566 + 49665170 49665410 L1PA3long 6157 - 0 241 124766 149 1 2 90 chain 30596 chr22 51304566 + 49671827 49672244 MLT2A1 477 - 6 477 83204 37 4 0 6 5 43 215 19 39 131 chain 11812 chr22 51304566 + 49700723 49700856 AluYk4 311 + 157 290 152976 133 chain 22605 chr22 51304566 + 49707863 49708133 AluSg 306 + 29 299 117570 270 chain 25493 chr22 51304566 + 49788523 49788872 THE1C 375 + 0 364 102259 108 13 28 44 0 1 4 13 13 151 1 0 15 chain 36257 chr22 51304566 + 49809705 49810096 SVA_C 1631 + 1217 1608 74553 391 chain 29120 chr22 51304566 + 49836934 49837252 AluYb8 318 - 0 318 88457 318 chain 37515 chr22 51304566 + 49859524 49859945 L1PA6 6164 - 13 434 72794 421 chain 22718 chr22 51304566 + 49954408 49954688 AluSp 311 + 19 299 116993 92 0 1 20 1 0 167 chain 3854 chr22 51304566 + 49956679 49956801 HAL1-2a_MD 234 + 46 119 209582 31 6 9 12 52 0 21 chain 4500 chr22 51304566 + 49991112 49991207 HAL1-2a_MD 234 - 9 168 200786 26 13 89 20 12 0 24 chain 98366 chr22 51304566 + 50062735 50064278 LTR12C 1709 - 0 1577 37206 23 1 0 60 10 9 75 0 102 67 5 0 52 27 26 13 1 0 54 20 13 87 95 60 164 1 9 58 1 0 86 35 2 171 0 5 99 0 6 5 6 0 164 41 43 40 0 2 82 chain 5684 chr22 51304566 + 50063243 50063325 LTR12C 1709 - 641 801 101835 64 0 78 18 chain 2263 chr22 51304566 + 50063642 50063670 LTR12C 1709 - 814 842 198673 28 chain 18028 chr22 51304566 + 50076835 50077212 L1PA15 4387 - 39 395 132780 13 13 8 11 2 0 46 14 11 42 13 8 24 1 0 55 1 0 14 17 16 40 21 18 50 chain 3575 chr22 51304566 + 50119174 50119215 LTR52 417 + 324 365 214052 41 chain 4516 chr22 51304566 + 50132339 50132571 7SK 245 + 12 245 200602 32 164 165 36 chain 68607 chr22 51304566 + 50133397 50134275 THE1A-int 1579 + 0 893 48981 537 0 4 12 1 2 173 4 14 151 chain 210408 chr22 51304566 + 50135712 50138338 L1PA8 5853 + 3232 5853 18476 194 0 1 194 5 4 177 0 9 61 6 7 336 2 1 364 0 4 13 0 1 276 0 1 126 16 14 254 9 0 252 1 0 19 29 28 40 2 0 44 6 5 22 1 0 11 1 0 50 2 1 19 1 0 93 chain 36558 chr22 51304566 + 50140499 50140991 LTR10E 629 + 5 548 74161 5 0 1 84 26 79 148 5 4 53 1 0 154 1 0 15 chain 27111 chr22 51304566 + 50231941 50232244 AluY 311 + 0 298 95897 118 5 0 180 chain 18938 chr22 51304566 + 50285637 50285860 AluY 311 + 83 307 130262 49 0 1 174 chain 102439 chr22 51304566 + 50427777 50429011 SVA_A 1864 - 0 1837 36152 355 0 1 14 0 3 164 38 526 105 10 7 27 0 74 16 0 40 505 chain 18734 chr22 51304566 + 50489844 50490257 L1PB2 3958 - 124 527 130868 55 91 88 12 1 0 62 1 0 49 30 29 82 2 1 5 1 0 13 2 0 7 chain 19473 chr22 51304566 + 50494261 50494509 MER41A 554 + 13 264 128742 167 9 12 72 chain 26477 chr22 51304566 + 50508348 50508650 AluSq10 312 + 0 302 98138 302 chain 28344 chr22 51304566 + 50525402 50525797 THE1C 375 + 0 375 91784 125 3 0 40 2 0 15 0 1 9 1 0 133 15 0 52 chain 21452 chr22 51304566 + 50676275 50676546 AluSp 311 + 6 266 122326 150 11 0 110 chain 71940 chr22 51304566 + 50679410 50680398 LTR13 1007 + 1 1007 47501 72 3 1 17 0 4 139 1 0 4 4 5 138 18 19 51 0 1 228 0 12 11 0 2 219 0 2 22 20 22 6 4 0 31 chain 22190 chr22 51304566 + 50680452 50680747 AluY 311 + 13 300 119392 119 6 7 136 0 2 16 11 0 7 chain 88013 chr22 51304566 + 50711641 50712651 LTR13 1007 + 0 1007 40365 37 0 2 387 7 0 542 0 2 37 chain 4601 chr22 51304566 + 50733798 50733850 MIR 256 + 64 116 199601 52 chain 22641 chr22 51304566 + 50768041 50768340 AluSc8 310 + 0 307 117369 50 13 18 59 1 4 176 chain 72704 chr22 51304566 + 50772099 50773035 LTR13_ 950 - 0 950 47166 344 11 0 117 0 2 90 16 36 81 0 1 187 21 23 69 chain 15080 chr22 51304566 + 50788605 50789455 Tigger1 2417 - 632 1148 141088 57 627 289 31 3 5 20 0 3 88 1 0 23 chain 3275 chr22 51304566 + 50793240 50793275 HY3 101 - 44 79 219434 35 chain 24629 chr22 51304566 + 50793655 50793957 AluYc3 301 - 1 301 106837 185 1 2 55 3 0 58 chain 77977 chr22 51304566 + 50806161 50807107 LTR13_ 950 - 0 950 44526 189 0 1 81 4 0 38 3 5 147 0 2 82 12 13 8 4 0 261 0 6 117 chain 25032 chr22 51304566 + 50863062 50863357 AluSc5 308 - 6 297 104629 171 4 0 120 chain 25130 chr22 51304566 + 50866145 50866448 AluYf4 310 - 6 310 104130 97 1 2 205 chain 22090 chr22 51304566 + 50930396 50930674 AluSc8 310 + 24 305 119839 13 1 0 95 0 3 122 6 7 41 chain 36445 chr22 51304566 + 50971754 50972219 LTR2 463 - 0 463 74300 88 12 13 71 0 1 53 1 0 212 3 0 25 chain 78782 chr22 51304566 + 50972296 50973244 LTR13A 966 + 0 966 44156 127 0 1 14 8 11 346 0 5 293 5 14 155 chain 21737 chr22 51304566 + 51005363 51005646 AluYc3 301 - 17 301 121252 138 19 19 6 0 1 120 chain 16744 chr22 51304566 + 51056451 51057406 Tigger1 2417 - 510 1405 136276 8 0 1 75 714 645 50 0 5 84 0 3 24 chain 46147 chr22 51304566 + 51060295 51060852 LTR10C 591 - 0 576 61896 63 0 13 65 1 0 318 0 1 77 0 4 19 0 2 14 chain 6953 chr22 51304566 + 51067694 51068131 LTR49 580 + 94 531 177786 39 1 0 5 11 165 14 150 1 28 49 44 35 87 88 18 chain 4571 chr22 51304566 + 51069272 51069366 MER84 505 - 5 101 199983 23 20 18 28 0 5 9 1 0 13 chain 4581 chr22 51304566 + 51081599 51081652 MER31A 484 + 40 93 199864 53 chain 26497 chr22 51304566 + 51083533 51083925 MER4A1 472 + 0 472 98056 140 0 58 27 0 21 23 33 33 144 3 4 22 chain 132599 chr22 51304566 + 51088055 51091068 MER4-int 2692 + 1 2654 27503 9 3 0 26 2 0 63 23 19 37 0 1 168 4 10 69 3 4 132 0 9 177 4 1 52 0 13 119 1 0 37 9 761 62 15 17 16 563 27 115 2 1 72 1 0 97 303 13 146 0 1 6 316 0 257 2 0 70 14 28 18 chain 36743 chr22 51304566 + 51091113 51091582 MER4A1 472 + 0 472 73890 396 9 12 64 chain 24855 chr22 51304566 + 51097173 51097462 AluSq2 311 - 20 311 105598 226 0 2 63 chain 6227 chr22 51304566 + 51108231 51108323 HY3 101 + 0 96 183339 47 8 12 37 chain 542673 chr22 51304566 + 51188578 51195751 L1PA4 6152 - 1 6152 2397 522 6 7 320 0 5 1009 0 2 139 0 1 868 0 4 280 0 2 491 0 1 108 1 0 548 1036 0 903 0 1 242 7 0 122 1 0 473 0 6 97 chain 4799 chr22 51304566 + 51235333 51235504 MER31-int 1156 - 867 941 197374 63 97 0 11 chain 13226 chr22 51304566 + 51239426 51239679 THE1C 375 + 0 259 147367 52 43 43 59 0 2 29 24 28 46 chain 3293 chr22 51304566 + 51241233 51241268 MER72 723 - 8 43 219109 35 chain 28436 chr22 51304566 + 51244035 51244339 AluYb8 318 + 4 308 91438 304 chain 30305 chr21 48129895 + 9448731 9449049 AluYb8 318 + 0 318 83890 318 chain 27980 chr21 48129895 + 9488517 9488847 L1PA5 6144 + 5796 6127 93068 95 8 9 227 chain 307447 chr21 48129895 + 9496557 9500095 L1PA5 6144 + 2571 6128 13108 87 0 1 17 0 1 456 3 8 17 1 0 526 0 2 2005 0 11 269 25 18 10 0 7 14 13 13 95 chain 3246 chr21 48129895 + 9504220 9504286 L1MCa 1829 + 1589 1654 220080 23 18 17 25 chain 145827 chr21 48129895 + 9505476 9507650 L1PB1 5432 + 3329 5422 25202 152 0 2 255 15 1 253 10 11 218 0 1 19 1 0 387 11 7 73 0 1 103 0 2 258 0 1 10 0 1 19 54 15 17 1 0 7 3 2 12 24 22 42 2 1 15 1 0 43 5 4 13 3 0 6 16 6 18 27 25 6 7 0 13 1 0 21 1 0 13 1 0 18 chain 187311 chr21 48129895 + 9528419 9530670 L1P1 4361 + 522 2753 20309 52 1 0 118 7 0 64 3 4 277 0 2 81 18 4 154 1 0 1036 1 0 371 4 0 11 1 6 51 chain 65310 chr21 48129895 + 9560235 9560976 L1PA5 6144 - 4 745 50421 741 chain 17857 chr21 48129895 + 9585065 9585282 L1PA7 6471 - 7 223 133220 156 1 0 60 chain 23586 chr21 48129895 + 9591617 9591959 MLT2A1 477 + 4 384 112658 138 0 1 26 1 5 106 0 25 40 19 27 12 chain 13295 chr21 48129895 + 9652088 9652353 MER57-int 2662 - 87 329 147111 16 19 16 5 0 1 12 36 21 68 18 12 91 chain 526577 chr21 48129895 + 9656296 9662422 L1PA3long 6157 - 15 6151 4536 129 1 0 4 3 4 695 5 6 250 0 1 4 1 0 152 4 11 599 11 8 986 0 1 29 0 1 91 5 6 380 0 5 89 0 1 371 1 0 1612 0 1 485 4 0 215 chain 3889 chr21 48129895 + 9688512 9688559 MSTA 426 - 237 284 209036 47 chain 18725 chr21 48129895 + 9688726 9689185 MSTA-int 1630 - 19 1607 130893 90 6 5 28 134 1264 79 23 27 6 1 0 6 3 0 83 chain 82074 chr21 48129895 + 9693223 9694318 L1PA7 6471 + 5369 6468 42733 19 6 0 8 1 7 194 0 6 18 4 0 45 3 4 461 0 1 176 3 5 146 2 0 9 chain 90531 chr21 48129895 + 9705999 9707586 L1PB 1623 - 172 1525 39460 5 1 0 32 2 1 22 189 0 94 14 0 303 4 5 179 27 29 101 0 1 149 13 14 26 43 22 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 12670 chr21 48129895 + 9727658 9727962 L1PA15 4387 - 35 323 149572 20 0 3 5 18 8 20 46 43 33 34 31 4 1 0 55 1 0 26 1 0 40 chain 65879 chr21 48129895 + 9751006 9751773 L1PA5 6144 - 9 777 50151 332 0 1 435 chain 4081 chr21 48129895 + 9835147 9835200 MER21A 919 - 328 381 206183 53 chain 200564 chr21 48129895 + 9838752 9841070 L1PA4 6152 + 3839 6151 19169 794 2 0 174 5 9 562 1 0 87 15 6 470 0 3 59 1 0 148 chain 29703 chr21 48129895 + 9841734 9842043 AluYa5 310 - 1 310 85821 309 chain 20275 chr21 48129895 + 9843382 9843620 L1PA3long 6157 - 56 292 126299 92 2 0 144 chain 41751 chr21 48129895 + 9846837 9847332 LTR15 485 - 0 485 66959 4 1 0 137 9 0 344 chain 5470 chr21 48129895 + 9855660 9855758 L1MA3 4352 - 20 112 190299 4 1 0 11 1 0 29 1 0 6 1 0 24 6 4 14 chain 91873 chr21 48129895 + 9883927 9885261 L1PB 1623 - 232 1525 39006 81 18 7 313 0 1 181 25 27 101 0 1 189 43 22 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 24371 chr21 48129895 + 9900985 9901273 L1PA5 6144 - 0 295 108247 148 0 7 140 chain 14861 chr21 48129895 + 9920291 9920613 L1MA2 4263 - 124 430 141747 14 3 1 7 2 0 12 1 0 49 9 0 7 1 3 16 1 0 52 16 15 5 1 0 12 31 30 83 chain 9824 chr21 48129895 + 9933480 9933689 MSTA-int 1630 + 1405 1611 161483 27 58 56 28 6 5 90 chain 27688 chr21 48129895 + 9940241 9940535 AluYb8 318 + 24 318 94088 294 chain 16872 chr21 48129895 + 9963967 9964314 MER57-int 2662 + 2332 2647 135911 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27329 chr21 48129895 + 9973864 9974243 L1MA3 4352 + 3059 3445 95174 41 8 16 286 4 3 40 chain 416145 chr21 48129895 + 9976907 9982108 L1PA7 6471 - 6 5341 9638 6 2 0 132 1 0 4 1 3 494 0 2 5 9 7 108 0 2 78 0 4 110 0 3 433 5 6 112 19 19 60 6 7 118 0 1 463 0 1 285 1 0 187 0 1 72 0 70 122 2 6 301 4 0 6 0 4 7 1 0 4 0 1 328 0 4 233 9 0 20 4 5 54 1 11 77 1 0 244 0 4 476 0 1 209 8 6 251 0 40 128 chain 149378 chr21 48129895 + 9989308 9991327 HERVK9-int 4720 - 1107 4666 24704 273 52 690 230 0 924 147 0 1 676 20 0 444 14 15 50 28 27 4 1 0 8 1 0 66 1 0 4 chain 35765 chr21 48129895 + 9992670 9993127 MER9a2 513 - 0 513 75180 99 12 0 20 0 2 98 1 67 207 0 1 4 1 0 15 chain 130419 chr21 48129895 + 9993146 9994811 HERVK14-int 1672 - 25 1671 27984 128 1 0 9 2 0 31 1 0 63 1 0 88 0 1 18 0 1 140 28 28 35 1 0 34 3 0 9 3 1 79 1 0 163 2 1 250 1 0 233 3 1 29 1 0 172 2 1 44 1 0 47 1 0 12 1 0 28 chain 22819 chr21 48129895 + 9994906 9995186 LTR14A 344 - 0 344 116496 177 0 4 63 0 60 40 chain 20580 chr21 48129895 + 10009226 10009466 L1PA4 6152 + 5900 6140 125359 240 chain 29433 chr21 48129895 + 10018859 10019178 AluYb8 318 + 0 317 86928 132 2 0 185 chain 530541 chr21 48129895 + 10021927 10028052 L1PA4 6152 - 9 6152 4129 617 0 1 889 2 1 594 0 1 361 0 1 234 0 3 1009 0 3 1193 1 0 195 0 1 175 3 0 174 11 10 540 1 15 126 chain 36997 chr21 48129895 + 10029409 10029860 L1PA5 6144 + 5688 6144 73514 122 1 2 77 0 4 251 chain 28842 chr21 48129895 + 10087968 10088312 L1P1 4361 + 3718 4065 89703 166 0 2 48 0 1 130 chain 151035 chr21 48129895 + 10092905 10094652 L1PA4 6152 - 6 1769 24469 107 0 1 225 0 1 414 0 4 86 0 4 261 0 1 511 0 5 143 chain 2559 chr21 48129895 + 10097205 10097281 MER21C 908 + 662 740 232378 27 31 34 4 1 0 13 chain 523572 chr21 48129895 + 10104785 10110896 L1PA4 6152 + 15 6152 4803 111 1 15 898 0 1 405 1 2 284 0 1 697 0 3 769 0 1 472 9 8 953 1 0 29 0 1 699 0 1 294 0 1 237 0 1 238 0 3 13 chain 23660 chr21 48129895 + 10137327 10137611 LTR14A 344 + 0 344 112253 42 0 60 242 chain 133700 chr21 48129895 + 10137706 10139389 HERVK14-int 1672 + 1 1665 27276 29 1 0 11 2 1 46 1 0 217 1 0 28 2 0 235 1 0 179 1 0 40 0 1 28 4 3 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 63 1 0 31 2 0 9 1 0 140 1 0 6 chain 38218 chr21 48129895 + 10139389 10139836 MER9a2 513 + 0 513 71817 227 1 67 219 chain 151629 chr21 48129895 + 10141155 10143196 HERVK9-int 4720 + 37 3614 24380 12 8 5 4 1 0 66 1 0 8 1 0 26 6 5 510 20 0 302 7 8 513 0 924 230 78 716 248 chain 419415 chr21 48129895 + 10150436 10155592 L1PA7 6471 + 1130 6461 9549 120 8 48 254 0 1 5 3 0 683 0 4 240 1 0 81 1 11 62 1 2 251 0 4 649 1 5 124 0 70 190 0 2 29 0 30 158 0 2 132 0 1 465 0 1 163 8 9 579 1 4 108 1 5 681 5 6 152 chain 529314 chr21 48129895 + 10172554 10178706 L1PA2 6032 - 1 6032 4266 2713 0 3 266 1 2 482 1 2 1124 0 2 338 0 3 54 0 3 261 137 9 513 5 4 32 5 1 51 16 15 153 chain 3889 chr21 48129895 + 10201835 10201882 MSTA 426 - 237 284 209035 47 chain 8765 chr21 48129895 + 10202048 10202172 MSTA-int 1630 - 19 142 166844 90 6 5 28 chain 13531 chr21 48129895 + 10394203 10394396 L1PA8 5853 - 14 207 146239 79 1 0 19 7 9 49 2 1 36 chain 46170 chr21 48129895 + 10394396 10394971 L1PA7 6471 - 41 624 61874 121 13 17 54 1 5 386 chain 7284 chr21 48129895 + 10462081 10462171 MLT1C 463 + 365 455 175559 90 chain 3512 chr21 48129895 + 10474941 10475027 MER45A 178 + 75 162 215193 27 34 35 25 chain 28928 chr21 48129895 + 10475209 10475514 AluYg6 310 + 0 305 89337 305 chain 42721 chr21 48129895 + 10482204 10482815 L1PA8 5853 + 5234 5853 65749 84 0 2 195 2 3 35 4 10 6 0 3 36 2 0 69 3 2 13 1 0 48 4 5 20 1 0 88 chain 164386 chr21 48129895 + 10483867 10485903 L1PA7 6471 - 1 2047 22761 9 5 0 492 8 12 254 2 0 82 3 1 76 0 1 282 6 13 362 2 3 17 0 3 281 0 3 155 chain 30109 chr21 48129895 + 10487926 10488244 AluYb8 318 - 0 318 84458 318 chain 23844 chr21 48129895 + 10499270 10499543 AluYc 301 + 1 276 111221 119 0 2 154 chain 25235 chr21 48129895 + 10511454 10511745 AluSp 311 + 8 299 103561 291 chain 27826 chr21 48129895 + 10522307 10522603 AluYa5 310 - 15 310 93598 169 1 0 126 chain 192378 chr21 48129895 + 10525126 10527251 L1PA3long 6157 + 4032 6157 19822 2125 chain 33971 chr21 48129895 + 10535131 10535630 LTR12F 595 - 0 595 77657 23 9 0 47 4 8 145 9 10 44 1 0 99 15 116 103 chain 58728 chr21 48129895 + 10567488 10568201 L1PA7 6471 + 5755 6465 53568 5 3 0 705 chain 33387 chr21 48129895 + 10571032 10571543 MER4E1 777 - 29 476 78592 198 77 14 133 5 4 98 chain 3480 chr21 48129895 + 10608112 10608150 MSTA 426 - 370 408 215653 38 chain 5256 chr21 48129895 + 10624997 10625095 L1MA3 4352 + 4240 4332 192442 14 6 4 24 1 0 6 1 0 29 1 0 11 1 0 4 chain 43106 chr21 48129895 + 10633433 10633927 LTR15 485 + 0 485 65283 343 8 0 138 1 0 4 chain 20226 chr21 48129895 + 10637074 10637310 L1PA3long 6157 + 5865 6101 126449 236 chain 204030 chr21 48129895 + 10639277 10641580 L1PA4 6152 - 1 2313 18922 207 0 3 562 0 2 157 0 1 583 2 1 283 0 4 509 chain 129413 chr21 48129895 + 10646006 10647414 L1PA2 6032 - 3 1411 28221 1408 chain 34502 chr21 48129895 + 10703711 10704106 L1PA3long 6157 + 5764 6156 76902 187 3 0 205 chain 42241 chr21 48129895 + 10707449 10707938 L1PA3long 6157 - 0 488 66347 245 1 0 243 chain 91833 chr21 48129895 + 10707938 10708995 L1P1 4361 + 2926 3983 39013 232 2 1 758 0 1 65 chain 511109 chr21 48129895 + 10736678 10742682 L1PA3long 6157 - 5 6137 6060 116 2 0 5 20 22 104 0 1 4 1 0 1489 5 1 538 0 1 1174 0 1 341 0 1 377 1 0 5 0 1 1061 0 128 42 2 1 468 8 9 109 0 1 132 chain 536400 chr21 48129895 + 10766786 10772809 L1PA3long 6157 - 1 6155 3394 3172 0 1 1436 0 1 640 1 129 521 0 1 253 chain 56496 chr21 48129895 + 10829553 10830174 L1PA2 6032 - 2 623 54852 621 chain 4345 chr21 48129895 + 10873390 10873444 MER65A 464 + 0 71 202665 43 0 17 11 chain 525531 chr21 48129895 + 10875236 10881361 L1PA5 6144 - 0 6144 4621 85 0 1 1075 0 1 4 1 0 6 0 2 348 1 0 273 0 6 571 0 1 936 0 1 151 0 1 514 0 1 321 0 1 136 1 0 138 0 3 121 0 5 841 1 0 601 chain 91482 chr21 48129895 + 10955364 10956414 L1PA5 6144 + 5096 6142 39141 198 1 0 216 2 3 622 4 0 7 chain 24195 chr21 48129895 + 10961014 10961290 L1PA5 6144 - 4 280 109247 276 chain 2468 chr21 48129895 + 10963810 10963951 L1M2c 2366 - 1277 1343 233497 19 87 11 19 1 0 4 1 3 10 chain 26474 chr21 48129895 + 10969156 10969445 AluYb8 318 + 31 317 98155 101 3 0 185 chain 60881 chr21 48129895 + 10988465 10989146 L1PA3long 6157 + 5465 6149 52396 407 0 3 274 chain 21888 chr21 48129895 + 11002808 11003071 AluY 311 + 9 277 120669 17 0 4 102 0 1 144 chain 3539 chr21 48129895 + 11005377 11005418 MER6B 211 - 3 44 214720 41 chain 22314 chr21 48129895 + 11011895 11012177 AluSc8 310 + 8 290 118854 44 9 6 74 0 3 155 chain 21466 chr21 48129895 + 11025007 11025313 AluSq2 311 + 10 303 122270 124 16 11 80 0 1 62 9 0 15 chain 3605 chr21 48129895 + 11101235 11101287 L1PA15-16 3068 - 248 297 213578 5 1 0 13 2 0 31 chain 6326 chr21 48129895 + 11123239 11123312 L1PA3long 6157 + 6084 6157 182589 73 chain 33144 chr21 48129895 + 11124445 11124875 L1PA8 5853 - 19 442 78997 74 1 0 19 2 1 52 1 0 9 2 1 71 2 0 43 1 0 153 chain 490447 chr21 48129895 + 11156628 11162782 L1PA4 6152 + 10 6146 7342 93 11 38 12 68 65 197 0 3 9 4 1 160 29 13 321 3 7 25 25 1 219 9 0 173 5 14 640 0 1 318 12 2 848 1 2 195 0 1 30 0 1 460 0 2 5 3 1 1433 0 1 584 2 1 260 chain 3338 chr21 48129895 + 11183454 11183551 L1MCa 1829 + 31 117 218263 6 5 0 17 0 2 17 1 0 8 27 20 16 chain 224812 chr21 48129895 + 14369453 14371939 L1PA2 6032 - 1 2487 17609 2486 chain 20288 chr21 48129895 + 14379759 14380033 AluY 311 + 30 300 126257 95 2 0 8 1 0 140 9 8 19 chain 28211 chr21 48129895 + 14392504 14392804 AluYg6 310 + 1 301 92267 300 chain 83292 chr21 48129895 + 14396045 14397060 LTR5B 1012 + 0 1012 42210 134 18 4 72 0 9 165 0 1 88 0 1 380 0 6 4 6 0 148 chain 172035 chr21 48129895 + 14427444 14430378 HERVIP10F-int 4088 + 199 2964 21811 11 8 4 4 1 0 13 14 8 12 4 0 15 3 0 7 3 1 13 1 0 19 1 0 8 83 45 8 1 0 6 6 0 15 2 0 29 23 12 6 1 0 7 1 0 14 3 2 16 1 0 4 3 1 11 3 0 14 20 15 18 1 0 31 1 0 33 1 0 5 3 2 5 1 0 15 1 0 10 2 1 13 1 0 21 1 0 7 1 0 28 2 0 6 1 0 48 8 5 33 1 0 6 1 0 60 1 0 5 1 0 26 1 0 11 1 0 16 33 23 4 1 0 21 1 0 4 4 1 7 1 0 30 1 0 41 2 0 11 1 0 21 1 0 5 1 0 5 1 0 5 3 1 24 8 5 22 1 0 14 1 0 40 1 0 27 1 2 71 1 0 38 4 0 13 1 0 4 19 12 17 1 0 11 1 0 6 1 0 24 2 1 20 0 1 7 1 0 59 11 9 19 1 0 20 13 10 32 10 9 23 4 3 9 10 7 403 1 0 21 1 0 64 2 1 82 1 0 77 2 1 12 2 1 134 1 0 5 0 1 284 0 11 205 chain 68394 chr21 48129895 + 14441930 14443197 L1P3 4156 - 49 1033 49092 381 0 1 116 381 93 112 0 4 277 chain 23219 chr21 48129895 + 14443215 14443586 L1PA8 5853 + 5489 5853 114604 68 8 7 43 3 1 70 29 27 35 2 1 17 4 3 92 chain 228602 chr21 48129895 + 14444397 14447035 L1PA5 6144 + 3498 6137 17381 184 1 0 266 0 1 61 1 2 608 1 0 901 0 2 183 1 0 431 chain 78692 chr21 48129895 + 14452359 14453373 MER11C 1089 - 30 1062 44194 321 0 1 45 0 4 93 42 43 167 2 1 67 0 4 58 0 9 219 chain 29878 chr21 48129895 + 14454234 14454561 L1PA2 6032 - 0 327 85171 327 chain 13264 chr21 48129895 + 14494299 14494460 L1PA4 6152 - 0 158 147234 6 3 0 152 chain 514167 chr21 48129895 + 14504099 14510241 L1PA4 6152 + 8 6151 5759 120 14 0 14 11 25 253 6 36 11 30 0 23 0 1 85 1 0 132 12 5 358 0 1 89 0 3 1071 0 1 1279 3 0 1377 0 1 385 0 4 37 1 2 56 10 12 757 2 0 5 chain 156367 chr21 48129895 + 14518407 14520151 L1PA2 6032 - 1970 3716 23805 500 0 2 1244 chain 176446 chr21 48129895 + 14520151 14522118 L1PA2 6032 + 4066 6032 21308 78 0 1 1721 5 0 7 6 11 143 2 0 5 chain 23049 chr21 48129895 + 14533313 14533567 L1PA4 6152 + 5743 5997 115396 254 chain 13657 chr21 48129895 + 14533574 14533728 L1PA4 6152 + 5997 6151 145752 154 chain 28752 chr21 48129895 + 14580439 14580750 AluYa5 310 - 0 310 90108 37 1 0 273 chain 117813 chr21 48129895 + 14598123 14599767 THE1A-int 1579 + 12 1579 31859 32 0 1 96 88 10 19 1 2 168 13 17 50 1 0 33 0 2 60 7 4 93 8 0 145 2 1 6 0 1 161 0 2 430 9 10 179 0 1 34 0 1 9 chain 22548 chr21 48129895 + 14599767 14600118 THE1A 353 + 0 353 117813 73 0 1 4 9 7 21 13 11 62 3 4 123 5 9 38 chain 33337 chr21 48129895 + 14630953 14631422 MER11A 1151 + 643 1151 78678 15 0 1 149 19 54 58 0 1 14 1 2 32 1 0 14 4 5 69 0 1 93 chain 28689 chr21 48129895 + 14641824 14642244 L1PA8 5853 - 3 418 90373 90 1 0 19 2 1 44 20 18 66 5 3 27 0 1 19 1 0 10 5 6 4 1 0 64 0 1 42 chain 6197 chr21 48129895 + 14679173 14679245 MER72 723 + 651 723 183605 72 chain 18360 chr21 48129895 + 14695841 14696137 MLT2A2 560 - 265 560 131909 63 67 66 166 chain 426433 chr21 48129895 + 14696146 14701770 HERVL-int 5654 - 10 5654 9388 265 0 1 14 0 3 75 0 3 766 4 19 311 0 1 6 1 0 459 0 9 265 9 2 83 1 0 389 6 0 99 9 1 167 2 1 98 21 7 25 2 11 469 22 23 36 2 4 265 3 9 4 0 1 150 0 4 25 4 3 6 0 1 210 0 1 148 3 0 81 1 0 160 0 1 23 0 1 36 18 19 293 1 0 4 0 1 80 0 1 177 0 1 4 7 6 192 0 1 44 24 25 55 chain 11888 chr21 48129895 + 14711468 14711644 L1PA8 5853 + 5684 5853 152657 4 1 0 25 4 0 29 1 0 18 8 7 86 chain 94760 chr21 48129895 + 14729586 14731347 L1PB 1623 + 98 1586 38146 4 1 0 10 1 0 5 1 0 52 4 1 18 7 4 76 2 1 103 2 0 26 2 1 69 28 7 306 16 19 175 18 19 309 22 7 67 193 0 36 2 1 32 1 0 5 134 103 21 2 0 11 chain 3605 chr21 48129895 + 14747945 14747997 L1PA15-16 3068 - 248 297 213577 5 1 0 13 2 0 31 chain 4344 chr21 48129895 + 14751380 14751428 SVA_F 1814 + 1017 1065 202678 48 chain 9159 chr21 48129895 + 14751647 14751843 SVA_F 1814 + 374 697 164769 11 0 3 25 70 191 56 0 3 34 chain 87538 chr21 48129895 + 14752772 14753999 SVA_A 1864 + 430 1849 40556 31 0 2 69 1 4 5 37 0 225 0 2 109 2 0 9 1 0 5 2 0 13 19 202 17 5 41 32 9 45 75 39 11 522 chain 1586 chr21 48129895 + 14752878 14752913 SVA_A 1864 + 728 763 136078 35 chain 17970 chr21 48129895 + 14775499 14775718 AluY 311 + 83 302 132937 49 0 1 90 1 0 79 chain 280797 chr21 48129895 + 14787129 14790230 L1PA2 6032 + 2930 6032 14597 1442 0 1 1659 chain 37719 chr21 48129895 + 14791523 14791973 L1PA4 6152 - 1 458 72528 144 4 11 302 chain 66711 chr21 48129895 + 14798837 14799651 MER11D 897 + 12 853 49781 362 0 4 124 1 3 76 8 28 14 0 1 229 chain 2875 chr21 48129895 + 14802660 14802691 MER6B 211 - 54 85 227433 31 chain 28181 chr21 48129895 + 14812583 14812928 L1PA7 6471 - 29 383 92373 130 4 5 141 0 7 27 0 1 43 chain 5786 chr21 48129895 + 14825197 14825315 MER33 330 + 46 166 187312 54 34 36 30 chain 97361 chr21 48129895 + 14841940 14843027 L1PA3long 6157 + 5060 6147 37467 1087 chain 151123 chr21 48129895 + 14845193 14846877 L1PA3long 6157 + 4476 6143 24459 597 15 0 192 2 0 878 chain 11085 chr21 48129895 + 14855261 14855467 LTR75_1 542 - 329 541 155867 37 45 49 14 4 6 106 chain 9509 chr21 48129895 + 14855766 14855917 MER6A 605 + 372 534 163022 65 8 11 44 5 13 29 chain 41178 chr21 48129895 + 14909622 14910164 MER41A 554 + 0 552 67669 140 11 22 216 1 0 174 chain 42846 chr21 48129895 + 14913517 14914394 HERVIP10F-int 4088 - 722 1623 65599 4 1 0 14 47 33 13 21 13 5 3 0 7 1 0 14 25 21 17 9 5 17 1 0 7 130 165 25 27 24 268 0 28 221 chain 23332 chr21 48129895 + 14925077 14925369 AluSp 311 - 20 311 114014 18 1 0 273 chain 23056 chr21 48129895 + 14927950 14928208 L1PA4 6152 + 5876 6138 115373 217 0 4 41 chain 91062 chr21 48129895 + 14948357 14949370 L1PA3long 6157 - 0 1013 39270 20 1 0 318 0 1 674 chain 191526 chr21 48129895 + 14949370 14951523 L1PA3long 6157 + 2936 5103 19910 282 0 1 37 0 4 163 5 4 935 0 4 486 0 1 222 0 5 23 chain 216474 chr21 48129895 + 14962520 14965089 L1PA7 6471 + 3863 6443 18091 293 3 4 93 0 3 351 0 2 65 0 4 124 0 1 433 0 3 63 0 1 194 7 1 123 0 3 79 1 0 740 chain 28030 chr21 48129895 + 14991447 14991752 L1PA2 6032 + 5726 6031 92889 305 chain 102191 chr21 48129895 + 15019578 15025479 L1PA7 6471 - 2 4189 36217 10 3 0 102 0 18 28 1 3 589 6 14 37 0 1 46 1 0 27 4 5 220 4390 2649 32 4 5 401 chain 3729 chr21 48129895 + 15044990 15045029 HY3 101 + 61 100 211474 39 chain 27450 chr21 48129895 + 15063807 15064372 LTR4 552 - 2 518 94816 86 1 0 23 39 55 61 78 7 115 12 11 11 1 0 65 43 52 30 chain 498193 chr21 48129895 + 15098222 15105431 L1PA6 6164 + 4 6162 6945 100 1 0 463 1 0 40 0 1 191 1 18 82 4 8 916 0 2 325 0 6 68 0 1 107 0 2 36 0 2 27 0 4 179 0 4 65 1 0 297 0 18 225 0 1 45 0 2 61 0 1 722 0 4 318 1113 0 303 0 1 154 3 2 65 4 5 160 1 0 160 0 1 41 0 1 75 0 3 53 0 1 226 8 1 552 3 0 13 chain 84068 chr21 48129895 + 15102503 15103610 MER11A 1151 + 0 1151 41875 77 0 8 143 1 0 66 0 11 11 37 0 72 0 1 22 0 1 422 1 59 192 1 0 26 0 4 36 chain 52274 chr21 48129895 + 15108122 15108694 L1HS 6032 - 1 569 57445 22 1 0 307 3 0 239 chain 24132 chr21 48129895 + 15115400 15115699 AluSp 311 + 10 309 109573 299 chain 24104 chr21 48129895 + 15155235 15155534 L1PA7 6471 - 9 308 109727 299 chain 14473 chr21 48129895 + 15163463 15163673 L1PA6 6164 - 2 212 142975 143 29 29 38 chain 18374 chr21 48129895 + 15175890 15176198 LTR7B 505 + 0 505 131866 51 0 1 56 57 254 79 14 13 51 chain 78322 chr21 48129895 + 15192200 15193169 LTR5_Hs 974 + 0 974 44364 285 0 1 105 2 1 369 11 11 47 8 15 37 2 0 103 chain 79400 chr21 48129895 + 15194795 15195668 L1PA3long 6157 - 10 883 43868 873 chain 2938 chr21 48129895 + 15224996 15225030 MSTA 426 - 329 363 226358 34 chain 3987 chr21 48129895 + 15229994 15230045 MSTA 426 - 52 104 207572 46 0 1 5 chain 3024 chr21 48129895 + 15276639 15276673 MSTA 426 - 249 283 224486 34 chain 3081 chr21 48129895 + 15298728 15298766 MER34C 514 - 82 120 223315 38 chain 124238 chr21 48129895 + 15306573 15309320 SVA_A 1864 - 3 1550 29607 133 0 22 441 228 0 121 644 0 162 39 0 60 3 0 35 38 0 48 77 0 72 151 2 29 3 0 8 2 0 75 2 0 151 37 0 188 chain 2634 chr21 48129895 + 15307147 15307179 SVA_A 1864 - 1078 1110 99316 32 chain 7562 chr21 48129895 + 15307179 15307286 SVA_A 1864 - 666 770 56543 55 1 0 8 2 0 41 chain 3290 chr21 48129895 + 15307286 15307375 SVA_A 1864 - 586 673 51954 70 2 0 17 chain 11903 chr21 48129895 + 15307496 15307818 SVA_A 1864 - 793 1110 51954 46 3 1 110 3 1 27 1 0 132 chain 8551 chr21 48129895 + 15307818 15307939 SVA_A 1864 - 1374 1460 56543 25 39 4 57 chain 5596 chr21 48129895 + 15308005 15308096 SVA_A 1864 - 589 680 158178 91 chain 1587 chr21 48129895 + 15308106 15308140 SVA_A 1864 - 576 610 76103 34 chain 1354 chr21 48129895 + 15308302 15308331 SVA_A 1864 - 771 800 76103 29 chain 2669 chr21 48129895 + 15308525 15308563 SVA_A 1864 - 952 989 122684 26 1 0 11 chain 2193 chr21 48129895 + 15308563 15308589 SVA_A 1864 - 695 721 165032 26 chain 1762 chr21 48129895 + 15308674 15308705 SVA_A 1864 - 1173 1204 96307 31 chain 687 chr21 48129895 + 15308719 15308751 SVA_A 1864 - 918 950 143047 32 chain 2477 chr21 48129895 + 15308751 15308818 SVA_A 1864 - 1247 1316 51954 38 0 2 29 chain 67388 chr21 48129895 + 15327542 15328309 L1PA5 6144 + 5367 6134 49491 767 chain 364836 chr21 48129895 + 15363586 15367919 L1P1 4361 - 20 4355 11235 12 2 1 23 1 0 157 1 0 470 0 2 209 8 9 49 1 0 152 0 5 54 0 1 1196 3 0 69 0 2 226 1 0 447 0 1 84 9 0 113 13 13 719 0 7 314 chain 22902 chr21 48129895 + 15375044 15375335 AluSg4 309 + 0 294 116097 81 0 5 45 1 0 132 1 0 31 chain 48084 chr21 48129895 + 15452787 15453366 LTR14C 587 - 0 580 60415 151 12 11 378 0 2 38 chain 19302 chr21 48129895 + 15464568 15465197 LTR12C 1709 - 54 936 129236 26 271 474 37 26 32 45 39 80 68 2 6 50 1 0 64 chain 2625 chr21 48129895 + 15464831 15464860 LTR12C 1709 - 726 755 231361 29 chain 2608 chr21 48129895 + 15464973 15465004 LTR12C 1709 - 627 658 226229 31 chain 37709 chr21 48129895 + 15487330 15487830 HERV1_LTRa 508 + 0 485 72542 42 1 0 6 1 0 25 31 16 68 12 14 314 chain 37585 chr21 48129895 + 15496632 15497130 HERV1_LTRa 508 + 0 508 72705 42 4 6 39 33 25 201 0 16 179 chain 14009 chr21 48129895 + 15514479 15514640 L1PA7 6471 + 6305 6466 144549 161 chain 3980 chr21 48129895 + 15534444 15534547 L1MD2 1676 + 1331 1433 207678 21 36 37 37 2 0 7 chain 553392 chr21 48129895 + 15539048 15545197 L1PA3long 6157 + 6 6157 1021 62 16 13 165 0 1 1168 0 1 536 1 0 158 0 3 3566 0 1 477 chain 70173 chr21 48129895 + 15551899 15552870 MER11A 1151 + 0 1151 48319 55 0 99 76 1 0 64 4 0 89 2 1 4 0 1 54 0 1 94 0 1 144 25 27 89 4 85 36 0 1 34 6 5 21 13 14 156 chain 156954 chr21 48129895 + 15555050 15556807 L1PA4 6152 + 4380 6151 23730 163 8 22 1586 chain 25832 chr21 48129895 + 15563437 15563719 AluYa8 305 + 20 302 100738 282 chain 211828 chr21 48129895 + 15573783 15576176 L1PA4 6152 + 3765 6152 18370 603 0 4 1666 27 11 87 0 6 10 chain 5346 chr21 48129895 + 15616318 15616381 LTR1B 797 - 0 63 191579 63 chain 71748 chr21 48129895 + 15621290 15622620 MER11A 1151 + 0 1146 47590 57 0 98 69 0 2 36 3 13 14 270 21 4 1 0 74 0 1 46 8 9 105 11 10 126 7 5 58 0 1 112 44 1 223 7 6 55 chain 85405 chr21 48129895 + 15653260 15654233 LTR5_Hs 974 - 0 974 41379 434 1 2 538 chain 325611 chr21 48129895 + 15699196 15703298 L1P3 4156 + 16 4114 12364 235 1 0 69 1 0 83 7 0 7 6 5 272 27 28 193 0 10 84 0 1 349 1 9 655 8 9 113 3 2 498 25 13 42 5 0 179 0 1 224 0 4 399 1 0 538 3 4 65 2 0 7 chain 37178 chr21 48129895 + 15749851 15750393 MLT2A2 560 + 2 560 73267 14 5 9 143 10 8 4 1 0 226 0 11 89 8 0 8 8 16 20 0 4 6 chain 74937 chr21 48129895 + 15779950 15780764 L1PA3long 6157 - 0 814 46045 814 chain 4586 chr21 48129895 + 15780770 15780824 MSTA 426 + 359 414 199788 10 0 1 44 chain 22184 chr21 48129895 + 15848184 15848460 AluSp 311 + 10 280 119427 226 8 2 42 chain 59920 chr21 48129895 + 15866328 15867038 L1PA7 6471 + 5757 6470 52863 468 0 3 242 chain 176697 chr21 48129895 + 15911551 15913602 L1PA5 6144 + 4069 6140 21282 682 0 1 116 0 1 447 7 17 446 0 2 317 0 9 28 3 0 5 chain 74685 chr21 48129895 + 15960093 15960901 L1PA2 6032 - 5 835 46168 91 0 22 717 chain 59035 chr21 48129895 + 15982035 15983039 MER11B 1079 + 7 1041 53373 117 5 0 234 0 5 94 18 17 22 59 48 32 18 19 67 102 139 16 8 9 50 0 1 45 0 1 105 2 3 10 chain 531614 chr21 48129895 + 15993500 15999607 L1PA5 6144 + 0 6143 4006 120 1 15 295 0 20 584 0 2 416 0 2 517 0 1 241 6 0 3173 0 3 754 chain 90092 chr21 48129895 + 16006388 16007667 L1PA8 5853 + 4600 5853 39617 134 3 0 207 0 1 64 9 5 73 8 10 60 19 20 152 22 4 139 0 1 94 1 0 43 3 1 71 11 16 7 6 0 38 2 1 19 1 0 93 chain 18631 chr21 48129895 + 16008165 16008394 L1PA6 6164 - 15 259 131134 32 1 17 186 1 0 9 chain 67128 chr21 48129895 + 16018576 16019511 L1MA1 4479 + 227 1174 49601 45 12 10 126 0 3 211 7 12 206 8 13 166 5 6 149 chain 91487 chr21 48129895 + 16019517 16020517 L1PA3long 6157 - 1210 2210 39046 1000 chain 110829 chr21 48129895 + 16020517 16021749 L1PA3long 6157 + 4923 6152 33995 959 2 0 133 1 0 137 chain 13998 chr21 48129895 + 16040504 16040706 L1P3 4156 + 3941 4139 144584 63 1 0 98 5 3 9 2 1 24 chain 44202 chr21 48129895 + 16041284 16041857 L1PA7 6471 - 4 573 63941 8 3 0 59 6 4 259 0 1 238 chain 27934 chr21 48129895 + 16042426 16042792 THE1B 368 + 0 368 93227 13 2 0 24 0 5 130 7 6 190 chain 23670 chr21 48129895 + 16053605 16053967 L1PA8 5853 + 5492 5853 112201 27 1 2 87 2 0 71 1 0 8 1 5 7 6 0 45 24 25 77 0 2 5 chain 34302 chr21 48129895 + 16069172 16069906 MLT2A1 477 - 8 477 77206 48 260 0 36 4 0 180 0 1 20 28 26 158 chain 42765 chr21 48129895 + 16094397 16094951 L1PA8 5853 - 0 546 65701 93 1 0 19 2 1 42 22 20 70 2 0 44 1 0 49 1 0 208 chain 38275 chr21 48129895 + 16110771 16111223 L1PA7 6471 - 11 464 71744 139 0 1 313 chain 5109 chr21 48129895 + 16129629 16129693 L1MB1 2102 + 380 444 193980 64 chain 506686 chr21 48129895 + 16151226 16157386 L1PA6 6164 + 0 6156 6420 371 50 57 83 1 0 444 0 1 139 0 1 314 35 26 246 3 8 644 14 1 178 0 1 41 0 1 744 0 1 229 0 1 165 1 0 602 0 1 649 0 3 371 1 0 75 1 0 759 chain 486610 chr21 48129895 + 16172972 16178571 L1PA4 6152 + 554 6152 7494 201 0 1 2742 0 7 1805 14 0 831 0 5 6 chain 22550 chr21 48129895 + 16180265 16180523 AluY 311 + 39 298 117800 93 0 1 165 chain 28472 chr21 48129895 + 16196966 16197274 L1PA2 6032 - 478 786 91297 308 chain 47417 chr21 48129895 + 16197274 16197786 L1PA2 6032 + 5518 6030 60888 512 chain 25835 chr21 48129895 + 16215820 16216156 THE1A 353 + 0 341 100727 13 0 5 92 1 0 51 1 2 178 chain 90070 chr21 48129895 + 16220542 16221610 L1PA7 6471 + 5391 6467 39626 82 0 1 149 0 5 74 0 1 90 1 0 578 0 2 13 0 1 71 1 0 9 chain 119123 chr21 48129895 + 16232432 16234012 THE1A-int 1579 - 5 1579 31369 131 0 1 291 0 2 6 4 1 397 1 0 54 37 32 434 3 1 45 3 4 5 1 0 154 2 4 12 chain 26175 chr21 48129895 + 16234012 16234364 THE1A 353 - 0 353 99301 224 22 23 17 1 0 4 0 1 84 chain 9915 chr21 48129895 + 16285072 16285186 L1P3 4156 + 3990 4104 160989 114 chain 26106 chr21 48129895 + 16285385 16285695 L1PA7 6471 + 6154 6464 99595 310 chain 559614 chr21 48129895 + 16299403 16305434 L1PA2 6032 + 0 6032 380 3940 0 1 2091 chain 524936 chr21 48129895 + 16306198 16312265 L1PA5 6144 - 1 6144 4690 845 1 6 8 1 0 488 1 2 9 0 21 136 1 0 277 0 4 58 0 1 276 1 2 166 5 6 1531 0 1 528 0 2 60 0 1 578 0 2 24 0 3 5 15 12 205 1 0 689 0 38 104 0 1 54 chain 5146 chr21 48129895 + 16314396 16314454 MER72 723 - 30 88 193585 58 chain 13889 chr21 48129895 + 16419891 16420055 THE1C 375 - 207 375 144957 22 0 4 142 chain 9337 chr21 48129895 + 16501323 16501429 THE1B 368 - 262 368 163872 106 chain 4029 chr21 48129895 + 16518768 16518818 MADE1 96 + 46 96 206943 50 chain 21948 chr21 48129895 + 16527195 16527555 THE1C 375 - 0 375 120434 32 9 12 82 65 76 5 0 1 167 chain 8942 chr21 48129895 + 16541940 16542159 MLT1A0 366 - 35 253 165915 19 0 1 67 96 94 37 chain 165468 chr21 48129895 + 16553193 16555192 L1PA7 6471 - 2 2010 22596 58 1 0 94 13 23 23 0 9 641 1 0 177 0 1 13 0 5 5 0 1 208 9 0 382 8 0 220 0 2 146 chain 7054 chr21 48129895 + 16588089 16588182 L1PA5 6144 + 5838 5933 177071 48 1 2 5 0 1 39 chain 132062 chr21 48129895 + 16589911 16591468 LTR12C 1709 - 0 1709 27622 481 0 4 107 2 0 6 1 0 115 0 159 523 1 0 4 0 1 200 14 6 103 chain 24925 chr21 48129895 + 16591753 16592054 AluSg7 307 + 10 307 105192 54 2 0 67 0 1 164 3 0 11 chain 32035 chr21 48129895 + 16596842 16597382 MLT2A2 560 - 0 549 80805 54 0 1 5 1 0 83 0 11 132 107 106 38 1 0 119 chain 7946 chr21 48129895 + 16608915 16609005 L1PA5 6144 - 4 94 171350 90 chain 22835 chr21 48129895 + 16625325 16625769 MLT2A2 560 - 0 560 116422 29 23 26 32 7 12 48 0 11 12 1 99 59 86 85 147 chain 183880 chr21 48129895 + 16633747 16635771 L1PA3long 6157 - 0 2024 20601 2024 chain 27045 chr21 48129895 + 16689029 16689348 L1PA6 6164 - 2 321 96130 319 chain 25487 chr21 48129895 + 16689367 16689726 THE1B 368 + 0 368 102284 15 2 0 25 0 5 37 10 11 75 12 18 56 1 0 126 chain 3183 chr21 48129895 + 16699641 16699674 MER52D 1964 + 1220 1253 221270 33 chain 36367 chr21 48129895 + 16738241 16738751 LTR10A 586 - 49 586 74406 23 0 1 65 15 10 162 0 39 11 14 4 9 0 1 137 5 6 69 chain 15446 chr21 48129895 + 16764615 16764817 L1PA16 3655 - 720 924 140063 34 2 0 12 2 6 152 chain 263301 chr21 48129895 + 16823611 16827034 L1PA10 4194 - 48 3461 15519 30 3 0 11 0 1 22 1 0 561 6 16 204 0 2 237 36 15 87 1 0 15 0 2 203 0 1 622 0 1 4 2 0 262 0 3 85 1 2 217 1 2 245 0 1 25 2 1 285 4 1 126 1 0 124 chain 32858 chr21 48129895 + 16827046 16827553 MLT2A1 477 + 2 477 79441 140 0 1 23 3 7 46 0 1 104 1 0 61 78 37 45 0 4 6 chain 186482 chr21 48129895 + 16834862 16837274 L1PA8 5853 + 3424 5853 20381 17 0 1 423 0 6 463 1 0 112 2 0 138 1 0 419 6 0 6 1 3 85 3 0 6 0 3 276 0 1 181 1 0 40 8 29 56 1 0 47 9 8 16 1 0 93 chain 14108 chr21 48129895 + 16890334 16890487 L1PA5 6144 + 5982 6135 144182 153 chain 3582 chr21 48129895 + 16926483 16926524 L1PREC2 3366 - 1840 1881 211012 41 chain 245801 chr21 48129895 + 16926524 16929207 L1PA3long 6157 + 3472 6155 16463 2683 chain 32286 chr21 48129895 + 16931102 16931724 MER4A 717 - 8 717 80387 59 118 184 64 10 12 53 0 11 91 21 22 80 12 14 99 0 5 15 chain 25221 chr21 48129895 + 16942739 16943033 AluSp 311 + 17 310 103630 115 1 0 178 chain 435421 chr21 48129895 + 16949279 16954938 HERVL-int 5654 + 0 5647 9184 228 0 3 189 5 10 346 10 11 737 5 10 161 0 1 200 1 14 162 1 10 123 1 2 365 1 2 396 0 1 78 0 1 69 0 1 43 0 1 66 3 25 490 0 2 118 0 4 90 89 2 409 0 8 210 7 0 7 0 9 5 1 0 42 5 6 354 0 4 165 0 6 41 1 0 24 1 7 14 3 0 5 44 47 207 23 2 114 chain 3928 chr21 48129895 + 16953171 16953216 HERVL-int 5654 + 3966 4011 208452 45 chain 111473 chr21 48129895 + 16966010 16967742 L1MA1 4479 + 2490 4162 33818 99 18 13 65 2 1 77 6 5 10 13 11 19 0 1 13 1 0 62 1 0 92 1 0 27 6 4 84 0 1 76 33 19 82 1 0 14 7 4 36 11 6 78 3 0 131 2 0 166 0 4 22 22 23 4 1 0 16 1 0 71 1 0 18 3 1 14 1 0 88 12 8 123 1 0 28 14 2 34 1 0 9 1 0 11 chain 64028 chr21 48129895 + 16969521 16970509 L1PB1 5432 - 2 923 50999 10 2 0 16 1 0 13 1 0 21 1 0 24 2 0 12 9 8 29 25 21 40 1 0 14 3 2 53 17 11 9 1 0 13 1 0 19 48 12 50 2 3 47 6 0 377 9 5 112 chain 27953 chr21 48129895 + 16970512 16970857 L1PB1 5432 + 4159 4507 93152 55 0 1 236 0 2 54 chain 233552 chr21 48129895 + 17006310 17009150 HERVL-int 5654 - 2798 5652 17116 9 0 1 689 4 0 68 0 9 909 0 1 28 0 4 311 0 1 232 12 12 270 0 2 308 chain 33041 chr21 48129895 + 17009152 17009616 MLT2A1 477 - 0 477 79150 21 1 0 31 20 0 16 0 28 168 1 2 38 5 9 21 0 1 142 chain 24080 chr21 48129895 + 17029806 17030259 L1PB1 5432 - 12 432 109870 16 1 0 13 1 0 21 1 0 24 24 19 29 17 5 12 7 6 38 1 0 16 2 1 51 2 0 11 14 9 15 1 0 19 3 0 9 2 3 103 chain 57912 chr21 48129895 + 17044512 17045150 SVA_A 1864 - 0 640 54029 563 0 1 36 0 1 39 chain 163651 chr21 48129895 + 17069523 17071469 L1PA7 6471 + 4505 6468 22855 248 0 1 797 0 1 69 1 0 23 1 32 22 0 2 182 16 0 270 0 1 306 2 0 9 chain 25717 chr21 48129895 + 17071817 17072193 THE1C 375 - 0 375 101231 25 1 0 117 6 9 38 2 1 4 0 1 66 0 2 59 9 6 34 2 0 13 chain 3379 chr21 48129895 + 17080976 17081014 U13 108 + 0 38 217506 38 chain 4203 chr21 48129895 + 17092292 17092355 MADE1 96 + 8 96 204499 13 1 26 49 chain 5226 chr21 48129895 + 17110109 17110265 Tigger4a 237 - 16 155 192771 46 11 0 20 65 59 14 chain 34806 chr21 48129895 + 17110993 17111450 LTR2 463 + 0 463 76461 186 6 10 166 12 13 52 0 1 35 chain 115252 chr21 48129895 + 17186656 17188346 THE1A-int 1579 + 0 1579 32700 351 11 12 158 2 0 15 3 2 103 2 0 15 29 31 610 0 12 66 133 12 54 2 1 14 3 4 119 chain 106651 chr21 48129895 + 17283567 17286789 L1PA6 6164 - 3 3228 11619 148 13 12 262 3 0 18 0 1 391 1 0 555 7 6 399 0 4 714 0 2 268 0 1 130 6 10 55 3 0 249 chain 557746 chr21 48129895 + 17286901 17293049 L1PA3long 6157 - 0 6153 530 1880 0 1 1092 0 1 941 0 1 1000 0 2 1235 chain 35219 chr21 48129895 + 17293064 17294128 L1PA6 6164 - 3231 4294 11619 592 8 7 464 chain 25790 chr21 48129895 + 17296862 17297223 THE1B 368 - 0 367 100912 75 1 0 94 18 13 17 1 0 114 0 15 27 2 0 12 chain 24272 chr21 48129895 + 17298798 17299151 THE1B 368 - 0 368 108839 169 4 3 20 5 4 85 10 12 20 0 15 40 chain 48772 chr21 48129895 + 17305193 17305795 PABL_A 660 + 0 652 59896 229 0 44 87 1 5 137 0 1 4 1 0 75 0 2 68 chain 42568 chr21 48129895 + 17310361 17310906 MLT2A2 560 - 0 560 65942 132 18 29 380 0 4 15 chain 4223 chr21 48129895 + 17325641 17325710 L1PREC2 3366 - 322 390 204261 34 8 7 27 chain 57360 chr21 48129895 + 17325715 17326592 L1PA13 3608 - 2333 3196 54310 111 10 6 49 5 6 55 3 4 31 7 6 105 1 0 177 1 4 90 2 0 49 0 4 46 1 0 17 2 0 17 2 0 17 2 1 17 6 2 10 8 6 6 2 0 11 1 0 16 chain 3930 chr21 48129895 + 17327939 17328006 L1MD 993 - 445 511 208414 40 11 10 16 chain 28594 chr21 48129895 + 17343114 17343488 MLT2A1 477 + 0 385 90767 40 2 0 101 1 2 26 0 4 174 1 3 8 0 6 21 chain 31258 chr21 48129895 + 17351958 17352385 LTR7 482 - 29 482 82067 125 0 1 15 1 0 4 0 1 10 0 31 151 20 14 101 chain 284518 chr21 48129895 + 17353599 17357208 HERVH-int 3825 - 0 3813 14383 111 1 0 574 9 0 8 8 24 438 0 1 367 0 1 202 8 13 306 0 1 117 0 1 348 0 1 86 15 0 37 10 3 67 3 4 74 5 0 200 0 3 60 1 0 22 54 204 18 1 0 12 0 35 10 0 26 85 1 2 16 33 32 34 25 27 243 chain 168116 chr21 48129895 + 17387061 17388941 L1PA4 6152 - 11 1895 22272 1783 0 4 97 chain 15694 chr21 48129895 + 17422055 17422261 L1MA1 4479 + 3873 4075 139288 74 1 0 5 3 0 123 chain 12195 chr21 48129895 + 17486809 17486974 THE1B 368 - 187 368 151442 12 1 0 102 6 23 44 chain 491268 chr21 48129895 + 17499812 17505966 L1PA7 6471 - 4 6468 7307 187 2 2 141 0 1 90 0 1 7 0 1 416 1 0 302 0 284 456 0 1 4 1 0 226 2 1 517 0 1 276 0 4 19 0 1 6 2 1 19 1 0 600 3 6 201 0 1 61 16 8 92 10 19 111 1 0 371 1 2 310 4 5 162 0 1 178 0 1 80 22 23 350 1 0 5 1 9 410 0 3 88 2 3 30 0 1 369 chain 29438 chr21 48129895 + 17522230 17522540 AluYa5 310 - 0 310 86907 310 chain 266270 chr21 48129895 + 17522810 17525736 L1PA3long 6157 - 11 2939 15379 854 1 0 1134 0 3 937 chain 510162 chr21 48129895 + 17596669 17603025 L1PA7 6471 + 16 6467 6149 181 0 1 73 0 26 114 0 1 13 20 21 70 7 8 915 11 8 186 0 2 269 1 0 4 0 1 732 12 4 228 0 1 132 0 1 10 0 3 176 0 3 303 0 1 45 0 1 284 1 2 170 3 0 162 4 35 146 0 3 64 13 24 510 2 0 156 0 9 509 0 1 657 1 0 4 0 1 29 1 0 35 0 3 6 11 22 86 chain 5687 chr21 48129895 + 17618846 17618921 MLT1A0 366 - 32 107 188229 75 chain 27675 chr21 48129895 + 17662632 17662932 AluYb8 318 - 17 315 94134 268 1 0 15 1 0 15 chain 30114 chr21 48129895 + 17733861 17734177 AluYb8 318 - 2 318 84442 316 chain 39875 chr21 48129895 + 17760953 17761482 MER41C 542 - 7 542 69500 85 3 5 12 1 3 107 0 1 271 1 2 49 chain 38022 chr21 48129895 + 17764277 17764875 LTR7B 505 - 0 505 72094 168 0 14 23 97 0 12 0 1 36 0 23 27 34 0 201 chain 3255 chr21 48129895 + 17764503 17764545 LTR7B 505 - 265 305 219882 8 2 0 32 chain 71498 chr21 48129895 + 17765647 17766451 L1PA3long 6157 - 15 822 47699 431 0 3 373 chain 34262 chr21 48129895 + 17770068 17770854 LTR7B 505 - 15 505 77261 179 1 34 20 320 24 31 36 2 17 3 4 179 chain 2028 chr21 48129895 + 17770269 17770336 LTR7B 505 - 272 308 238360 10 32 1 25 chain 12261 chr21 48129895 + 17772474 17773504 MER21B 843 - 43 430 151151 32 10 8 11 13 0 61 778 159 82 22 13 21 chain 262097 chr21 48129895 + 17782261 17785304 L1PA5 6144 - 16 3007 15577 45 25 0 13 39 1 385 1 0 577 0 6 200 0 4 60 0 1 703 0 1 190 1 0 205 0 1 599 chain 65415 chr21 48129895 + 17815522 17816262 L1PA5 6144 - 0 739 50373 39 0 1 73 1 0 504 1 0 122 chain 24415 chr21 48129895 + 17832162 17832513 THE1B 368 - 12 368 108003 35 1 2 145 3 2 62 2 3 22 12 16 69 chain 117553 chr21 48129895 + 17835564 17837106 THE1B-int 1605 + 8 1600 31943 17 3 0 5 1 4 108 0 1 283 0 25 25 3 5 43 1 0 211 12 31 170 0 3 578 0 1 82 chain 101206 chr21 48129895 + 17850517 17852261 L1MA1 4479 - 324 2006 36464 4 1 0 9 1 0 29 8 6 29 7 4 117 28 25 73 1 0 4 2 9 20 6 7 64 1 0 16 15 0 24 1 0 184 13 9 104 0 1 20 28 20 20 1 4 42 13 8 36 7 3 13 1 0 94 4 3 62 2 0 87 29 28 13 11 10 84 1 0 67 1 0 32 2 0 54 45 32 17 2 1 55 13 12 127 chain 149986 chr21 48129895 + 17854495 17856681 L1PB1 5432 - 1725 3767 24610 394 0 14 35 8 9 294 6 0 55 3 5 59 1 0 4 1 0 8 3 0 10 10 4 217 1 0 98 1 0 230 0 3 22 6 0 79 0 1 4 1 0 47 4 6 44 10 8 238 0 3 34 153 10 67 0 1 39 chain 43028 chr21 48129895 + 17870095 17870647 L1PB1 5432 - 725 1269 65388 28 0 3 50 4 0 92 9 1 152 3 4 214 chain 42107 chr21 48129895 + 17870647 17871359 L1PB1 5432 + 4686 5381 66291 7 0 1 20 1 0 64 25 34 291 0 3 32 1 0 4 6 5 11 5 1 9 2 0 38 0 1 13 2 1 12 8 7 40 1 0 16 26 13 18 24 19 24 1 0 11 chain 71797 chr21 48129895 + 17883644 17884522 L1PA6 6164 - 2 889 47566 152 5 8 246 0 1 21 0 3 181 0 2 273 chain 2776 chr21 48129895 + 17896043 17896083 L1MD1 2063 - 280 316 229077 7 4 0 29 chain 88242 chr21 48129895 + 17898347 17899891 HSMAR1 1287 - 1 1251 40284 600 0 1 42 0 7 6 16 9 101 1 2 98 0 11 88 20 21 30 13 29 108 1 2 59 326 0 17 0 1 18 chain 4672 chr21 48129895 + 17899906 17899966 L1MD1 2063 - 1911 1970 198847 13 1 0 46 chain 50369 chr21 48129895 + 17916704 17917238 L1HS 6032 - 0 534 58737 534 chain 25640 chr21 48129895 + 17968035 17968317 AluY 311 + 27 310 101538 105 0 1 177 chain 31698 chr21 48129895 + 17986624 17986964 L1PA3long 6157 - 837 1177 80428 340 chain 75824 chr21 48129895 + 17986964 17987798 L1PA3long 6157 + 5323 6157 45587 834 chain 29895 chr21 48129895 + 17994061 17994430 THE1B 368 - 0 368 85115 194 3 2 172 chain 39211 chr21 48129895 + 18011210 18011671 LTR2 463 + 0 463 70443 8 0 1 295 0 1 158 chain 53801 chr21 48129895 + 18027401 18028089 L1PA8 5853 + 5171 5853 56477 393 1 0 44 2 0 67 5 4 61 2 1 19 2 1 92 chain 26366 chr21 48129895 + 18033440 18033781 L1PA7 6471 - 10 329 98552 64 22 0 255 chain 75322 chr21 48129895 + 18036874 18037767 L1PA6 6164 - 2 898 45864 157 27 30 709 chain 45543 chr21 48129895 + 18075726 18076251 L1PA5 6144 - 12 537 62466 27 0 1 415 1 0 82 chain 23631 chr21 48129895 + 18084553 18084907 L1PA8 5853 - 0 345 112411 92 2 1 19 2 1 47 7 6 8 1 0 63 10 8 44 1 0 49 2 0 7 chain 19897 chr21 48129895 + 18084951 18085191 L1PA8 5853 + 5228 5469 127493 26 0 1 214 chain 63459 chr21 48129895 + 18092806 18093591 L1PA7 6471 + 5684 6470 51262 14 0 2 592 26 25 153 chain 59467 chr21 48129895 + 18102717 18103376 L1PA4 6152 - 16 678 53133 654 0 3 5 chain 168538 chr21 48129895 + 18103401 18105282 L1PA4 6152 - 9 1892 22219 1424 0 3 217 1 0 239 chain 19277 chr21 48129895 + 18105282 18105496 L1PA4 6152 + 5938 6152 129295 214 chain 318298 chr21 48129895 + 18105514 18109425 L1PA7 6471 + 2492 6457 12659 138 0 7 461 2 1 394 0 12 174 6 7 271 0 17 283 0 1 358 9 0 55 0 4 73 0 1 199 0 10 27 1 0 390 0 1 237 2 1 7 0 8 447 0 4 144 0 1 84 7 0 6 6 12 130 chain 301393 chr21 48129895 + 18129192 18132570 L1PA4 6152 + 2767 6152 13352 396 0 1 20 1 5 1098 0 2 1863 chain 343756 chr21 48129895 + 18154020 18158257 L1PA7 6471 + 1088 6446 11788 683 0 1 289 0 1129 204 0 3 152 6 10 41 6 7 222 0 1 174 5 6 215 6 7 716 1 0 7 5 2 287 7 6 27 0 1 92 0 1 126 23 1 116 0 3 52 0 1 551 0 1 224 chain 282679 chr21 48129895 + 18251748 18255832 L1PA10 4194 + 122 4161 14491 15 4 0 7 137 106 19 4 6 12 45 19 8 1 0 23 2 0 18 11 9 10 5 0 6 1 0 12 9 4 7 1 0 76 8 6 669 8 2 338 1 8 78 1 11 167 9 1 90 0 1 78 4 0 7 10 7 668 1 2 5 1 0 5 0 2 114 5 6 39 10 15 165 3 1 166 1 2 320 0 21 155 0 3 21 5 10 32 3 0 91 8 16 281 9 8 26 3 0 34 1 0 11 chain 16897 chr21 48129895 + 18257382 18257562 L1PA3long 6157 + 5796 5976 135853 180 chain 26225 chr21 48129895 + 18264529 18264918 LTR7 482 + 0 469 99110 50 27 65 110 0 1 39 0 31 11 7 17 145 chain 315368 chr21 48129895 + 18264933 18268900 HERVH-int 3825 + 0 3825 12791 333 1 0 199 5 0 38 16 14 23 0 31 11 0 20 22 43 2 4 1 0 82 1 0 206 0 1 6 1 0 689 0 5 314 0 4 207 0 12 35 1 2 41 0 1 672 166 1 40 1 0 612 1 2 196 chain 28175 chr21 48129895 + 18286447 18286848 LTR7 482 + 0 482 92389 68 9 47 109 8 40 50 0 10 41 1 2 115 chain 311796 chr21 48129895 + 18286850 18290559 HERVH-int 3825 + 0 3825 12931 333 2 1 159 13 159 4 1 0 23 42 0 19 2 1 57 0 1 6 0 2 14 0 1 245 0 6 281 7 6 816 0 1 168 0 1 1189 0 4 328 chain 26558 chr21 48129895 + 18291815 18292203 LTR7 482 + 0 467 97812 68 9 47 109 8 9 17 0 30 27 7 17 143 chain 35993 chr21 48129895 + 18293816 18294219 L1PA3long 6157 + 5749 6157 74906 74 0 1 192 0 4 137 chain 54768 chr21 48129895 + 18309384 18310045 L1PA7 6471 - 9 673 55861 141 0 1 21 2 3 111 0 3 280 6 4 100 chain 16963 chr21 48129895 + 18354167 18354422 L1PA8 5853 - 0 249 135690 92 2 1 15 7 6 48 5 4 8 2 1 69 2 0 5 chain 4588 chr21 48129895 + 18370848 18370902 MER58C 217 - 4 58 199771 54 chain 21984 chr21 48129895 + 18371528 18371858 THE1B 368 - 25 368 120299 168 18 17 55 6 5 33 8 23 42 chain 22783 chr21 48129895 + 18381900 18382242 THE1B 368 + 0 347 116662 143 1 0 26 1 0 23 41 51 99 3 0 5 chain 74859 chr21 48129895 + 18389223 18390177 L1PA8A 6298 + 5319 6290 46086 15 5 10 151 7 10 68 1 0 21 0 1 24 1 0 193 0 1 187 0 1 141 8 16 132 chain 3534 chr21 48129895 + 18401681 18401733 MLT1E2 623 - 60 108 214820 38 3 0 6 1 0 4 chain 513195 chr21 48129895 + 18406470 18412567 L1PA6 6164 + 13 6161 5866 435 12 17 288 6 9 97 0 11 591 0 19 174 0 2 164 0 1 221 13 5 62 3 4 283 0 1 166 0 8 305 0 1 313 0 1 1163 0 1 64 0 2 249 0 1 75 0 1 1246 1 2 105 0 1 46 1 0 14 chain 33424 chr21 48129895 + 18460051 18460498 LTR7 482 + 0 476 78524 100 21 15 109 10 43 38 0 1 38 0 1 131 chain 534228 chr21 48129895 + 18462833 18468848 L1PA3long 6157 + 0 6157 3684 697 0 7 37 0 1 29 7 135 862 0 1 438 0 4 114 0 1 739 4 0 512 0 1 979 0 1 271 0 2 328 0 1 409 0 1 570 1 0 7 1 0 10 chain 30034 chr21 48129895 + 18472378 18472696 AluYb8 318 + 0 318 84700 318 chain 272014 chr21 48129895 + 18478263 18484696 L1PA11 4918 + 35 4578 15079 7 2 0 35 2 0 7 5 4 19 12 11 10 2 0 52 1 0 33 2 0 5 2 1 102 14 17 130 1 0 23 2 1 70 2 4 132 106 567 297 8 7 35 0 3 5 3 0 28 6 7 168 3 0 381 0 1 63 3 7 20 0 1 4 5 4 8 0 4 106 25 24 193 1 0 30 73 61 175 2 0 9 0 1 14 0 1 115 9 0 113 11 6 68 0 10 106 1 2 98 1 0 88 5 7 15 2277 0 110 5 0 317 15 10 344 28 6 52 13 11 6 3 0 63 2 0 19 1 0 20 60 47 13 2 0 10 chain 124165 chr21 48129895 + 18481703 18483259 THE1A-int 1579 - 24 1579 29644 87 1 0 605 0 1 488 1 0 374 chain 33274 chr21 48129895 + 18493758 18494209 LTR7 482 + 0 482 78764 38 16 14 213 1 32 8 0 1 8 1 0 105 12 14 49 chain 282475 chr21 48129895 + 18494211 18497844 HERVH-int 3825 + 0 3822 14506 315 21 20 138 0 5 7 2 0 50 0 58 12 71 0 13 1 0 13 5 2 12 14 13 39 1 0 81 2 1 651 10 0 142 5 0 207 0 1 306 12 17 897 9 15 105 8 218 484 chain 3308 chr21 48129895 + 18494757 18494827 HERVH-int 3825 + 618 684 208536 12 30 26 28 chain 26909 chr21 48129895 + 18499665 18500000 LTR7 482 + 0 364 96598 56 3 1 180 0 31 96 chain 414777 chr21 48129895 + 18525258 18530221 L1PA6 6164 + 1199 6160 9676 44 0 1 190 0 5 273 0 1 244 0 1 367 0 1 136 1 0 125 0 1 147 12 7 166 0 1 289 0 1 318 9 5 349 21 22 375 0 1 380 2 0 548 1 0 171 1 0 80 0 1 383 1 0 280 0 1 39 3 0 8 chain 489498 chr21 48129895 + 18535868 18541346 L1PA3long 6157 + 5 6157 7388 89 0 526 161 0 128 520 0 1 845 0 1 823 1 0 89 0 1 77 0 4 429 0 10 584 0 2 1700 0 1 156 0 1 4 chain 76286 chr21 48129895 + 18544724 18545587 L1PA3long 6157 - 0 866 45317 15 3 0 134 0 7 594 1 0 89 1 2 16 1 0 9 chain 11906 chr21 48129895 + 18545587 18545724 L1HS 6032 + 1797 1934 152227 137 chain 14487 chr21 48129895 + 18553564 18553735 MER52-int 3354 - 2291 2470 142924 10 1 0 53 0 9 107 chain 29385 chr21 48129895 + 18565610 18566541 LTR19A 502 + 0 500 87144 64 0 1 126 20 55 62 14 16 8 0 1 10 2 0 6 0 2 89 471 0 20 6 7 33 chain 21643 chr21 48129895 + 18566023 18566276 L1PA5 6144 - 202 455 121602 253 chain 15231 chr21 48129895 + 18566276 18566463 L1PA5 6144 + 5944 6132 140687 31 1 2 155 chain 114644 chr21 48129895 + 18576080 18577424 L1PA7 6471 + 5079 6423 32904 490 0 1 51 1 0 802 chain 511561 chr21 48129895 + 18612492 18618956 L1PA7 6471 + 0 6470 6020 410 0 2 201 1 2 542 27 0 50 3 7 25 0 13 103 0 1 27 0 3 128 22 4 44 2 0 146 2 0 10 3 10 259 0 1 395 2 1 35 1 4 173 7 8 35 0 2 30 0 2 32 0 22 369 0 4 326 1 2 160 1 0 93 16 23 132 3 0 96 10 13 1004 2 0 69 1 0 386 0 1 214 0 3 80 2 1 147 14 0 285 2 1 325 2 0 9 chain 526196 chr21 48129895 + 18643625 18649870 L1PA4 6152 + 1 6141 4570 1315 6 22 260 4 5 244 0 5 52 131 0 67 3 0 348 1 2 12 1 0 10 0 2 357 11 9 459 0 1 994 0 2 1137 1 5 832 chain 243719 chr21 48129895 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6435 6096 399 28 13 4 0 1 4 1 0 162 6 7 238 1 0 100 5 0 6 0 5 391 12 13 129 18 0 200 7 8 462 3 1 17 0 4 210 15 0 258 1 0 76 0 3 178 0 4 331 258 0 104 5 6 505 1 2 90 5 3 323 18 12 106 7 8 673 4 0 565 5 4 245 1 2 551 1 2 10 chain 29711 chr21 48129895 + 18692125 18692465 L1PA7 6471 + 5968 6308 85791 340 chain 13096 chr21 48129895 + 18692473 18692623 L1PA7 6471 + 6315 6465 147862 150 chain 6141 chr21 48129895 + 18693931 18694046 L1MA3 4352 + 1026 1140 184065 46 1 2 7 1 0 30 13 12 17 chain 7221 chr21 48129895 + 18696061 18696150 L1MA3 4352 + 3939 4038 175933 72 0 10 17 chain 549484 chr21 48129895 + 18699801 18705825 L1PA2 6032 + 0 6022 1519 912 1 0 1167 0 2 345 4 0 365 0 1 2387 0 1 761 1 0 81 chain 18541 chr21 48129895 + 18711807 18712251 MLT2A2 560 - 0 560 131389 39 4 0 7 8 12 14 25 30 24 18 132 28 108 105 169 chain 209295 chr21 48129895 + 18712251 18714836 HERVL-int 5654 - 0 2592 18542 79 0 1 140 1 0 158 0 3 55 1 2 19 0 3 382 0 1 248 0 1 424 0 1 49 5 6 563 1 0 19 1 0 30 2 0 408 chain 126544 chr21 48129895 + 18716215 18717781 THE1A-int 1579 + 0 1568 28931 484 1 0 223 9 11 660 0 1 189 chain 24888 chr21 48129895 + 18717792 18718127 THE1A 353 + 0 353 105420 44 0 1 65 1 0 27 0 5 60 1 0 97 5 19 35 chain 37970 chr21 48129895 + 18726675 18727166 LTR12F 595 + 0 595 72172 103 0 1 41 2 0 13 3 36 16 0 9 67 0 64 42 1 0 203 chain 97716 chr21 48129895 + 18727167 18728540 L1PBa 3878 + 1243 2619 37359 113 28 26 33 2 1 189 13 9 4 1 0 84 0 1 51 3 6 188 1 0 5 4 5 158 1 4 149 21 23 29 4 6 292 chain 10733 chr21 48129895 + 18735321 18735469 MLT1D 503 + 5 148 157265 123 6 1 19 chain 3948 chr21 48129895 + 18742848 18743005 MER45A 178 - 26 178 208161 18 18 19 19 66 60 36 chain 94338 chr21 48129895 + 18745767 18748337 L1PA6 6164 + 1390 3977 10361 6 0 1 49 0 1 737 1 0 28 0 2 119 0 1 192 0 10 215 0 1 308 3 4 24 0 1 100 0 1 110 1 0 677 chain 544176 chr21 48129895 + 18748357 18754249 L1PA2 6032 + 0 5895 2193 761 0 1 2183 0 1 2940 0 1 8 chain 80059 chr21 48129895 + 18754291 18756472 L1PA6 6164 + 3977 6162 10361 393 0 4 84 0 1 576 8 7 594 0 1 367 1 2 148 2 0 8 chain 28052 chr21 48129895 + 18757316 18757813 L1PB1 5432 - 5 467 92817 5 2 0 18 1 0 13 1 0 21 1 0 24 2 0 13 2 1 5 2 0 30 13 1 16 1 0 43 1 0 12 6 5 52 2 0 9 5 1 11 1 0 11 9 8 14 3 0 8 2 3 138 chain 26071 chr21 48129895 + 18782076 18782452 THE1C 375 - 0 375 99747 32 10 9 36 0 1 93 28 27 177 chain 16039 chr21 48129895 + 18782735 18782973 MER1A 529 + 279 519 138252 164 27 28 25 3 4 19 chain 4938 chr21 48129895 + 18827118 18827177 tRNA-Gly-GGY 63 - 5 63 195824 4 1 0 54 chain 20540 chr21 48129895 + 18858700 18858984 AluSq2 311 + 9 302 125509 113 6 8 45 10 17 110 chain 21872 chr21 48129895 + 18858986 18859257 AluSx1 309 + 0 265 120744 24 4 0 97 2 0 144 chain 3667 chr21 48129895 + 18874809 18874886 ORSL 269 + 70 171 212442 34 21 45 22 chain 7792 chr21 48129895 + 18875851 18875959 LTR9B 643 + 451 561 172347 24 3 5 81 chain 54969 chr21 48129895 + 18878309 18879656 MER4E1 777 + 0 764 55724 17 4 0 190 8 20 65 0 3 5 3 0 29 602 5 128 1 2 72 0 1 4 1 6 4 1 0 213 chain 17357 chr21 48129895 + 18883076 18883275 AluSx4 309 + 71 270 134638 199 chain 24161 chr21 48129895 + 18887847 18888146 AluY 311 + 0 291 109418 171 0 6 104 14 0 10 chain 24767 chr21 48129895 + 18894472 18894759 AluSp 311 - 18 305 106070 287 chain 23955 chr21 48129895 + 18900735 18901025 AluSp 311 - 22 311 110588 24 0 2 135 2 0 3 1 0 125 chain 4730 chr21 48129895 + 18913960 18914066 L1MC1 2226 - 207 319 198164 27 24 37 19 6 0 22 1 0 7 chain 11728 chr21 48129895 + 18936484 18936816 MER2 342 - 48 246 153354 43 169 33 108 1 3 11 chain 162044 chr21 48129895 + 18959057 18960876 L1PA4 6152 - 0 1825 23056 137 8 1 9 1 8 525 1 0 164 0 4 272 0 3 702 chain 2947 chr21 48129895 + 18989718 18989749 U6 107 - 76 107 226145 31 chain 35161 chr21 48129895 + 19025025 19025458 L1PA7 6471 + 5876 6313 75969 300 13 16 12 0 1 108 chain 12571 chr21 48129895 + 19025468 19025611 L1PA7 6471 + 6323 6466 149961 143 chain 22068 chr21 48129895 + 19033724 19033991 AluSc 308 + 5 272 119927 267 chain 7526 chr21 48129895 + 19039162 19039357 LTR51 675 - 229 425 173999 71 90 91 34 chain 49421 chr21 48129895 + 19047523 19048466 PABL_A 660 + 0 635 59442 60 16 30 165 0 1 138 0 1 34 324 0 206 chain 82588 chr21 48129895 + 19048867 19049834 LTR13A 966 - 0 966 42506 112 0 1 184 3 1 668 chain 30042 chr21 48129895 + 19050484 19050906 MER1A 529 + 64 529 84678 16 15 55 157 1 0 102 1 2 60 7 10 63 chain 4479 chr21 48129895 + 19055092 19055141 LTR49 580 - 253 302 201023 49 chain 378406 chr21 48129895 + 19056187 19061238 L1PB1 5432 - 320 5357 10804 9 3 0 92 0 1 40 0 8 31 0 1 94 14 13 196 3 0 90 0 7 174 1 0 51 0 1 140 0 1 98 47 1 192 2 0 48 0 4 82 30 6 185 1 9 294 3 2 232 0 16 152 1 0 269 0 1 33 1 2 32 10 8 762 0 15 302 23 11 5 2 0 7 1 0 56 0 13 96 7 9 290 1 9 7 8 0 166 1 7 129 0 1 68 1 0 71 1 0 301 10 11 86 chain 4172 chr21 48129895 + 19057224 19057270 L1PB1 5432 - 2955 3001 199349 46 chain 27533 chr21 48129895 + 19063674 19063972 AluYf5 307 - 9 307 94564 298 chain 81337 chr21 48129895 + 19066536 19067501 LTR5_Hs 974 - 3 974 43028 100 5 3 34 5 12 536 0 1 285 chain 29086 chr21 48129895 + 19068720 19069511 LTR7B 505 - 17 505 88608 8 2 0 26 22 22 18 2 1 5 0 1 150 323 24 34 34 0 16 7 8 49 0 31 95 chain 2594 chr21 48129895 + 19068955 19068985 LTR7B 505 - 273 303 231757 30 chain 3991 chr21 48129895 + 19069223 19069275 LTR7B 505 - 195 248 207510 25 0 1 27 chain 58083 chr21 48129895 + 19073177 19073965 MER4E1 777 - 10 777 53935 10 0 2 63 0 1 117 14 1 22 6 14 109 2 3 26 5 2 118 17 0 279 chain 8349 chr21 48129895 + 19080308 19080417 MER85 139 + 24 139 169124 66 3 9 40 chain 46065 chr21 48129895 + 19085353 19086041 THE1B-int 1605 - 877 1605 61981 16 23 24 40 0 1 4 21 20 34 0 1 30 4 15 67 1 0 19 0 25 414 3 6 12 chain 27085 chr21 48129895 + 19090452 19090784 THE1C 375 - 46 375 95987 204 3 0 125 chain 130863 chr21 48129895 + 19090956 19093424 SVA_F 1814 - 0 1479 27897 10 2 0 617 1 0 11 1 0 151 51 0 63 986 14 67 0 1 170 0 37 338 chain 721 chr21 48129895 + 19091764 19091800 SVA_F 1814 - 803 838 134590 10 2 0 22 0 1 2 chain 4932 chr21 48129895 + 19091863 19091914 SVA_F 1814 - 725 776 143516 51 chain 6472 chr21 48129895 + 19091914 19092237 SVA_F 1814 - 889 1063 134590 27 179 0 43 1 0 8 27 59 13 1 0 24 chain 9263 chr21 48129895 + 19092014 19092119 SVA_F 1814 - 523 627 164246 17 1 0 87 chain 2515 chr21 48129895 + 19092172 19092199 SVA_F 1814 - 678 705 135466 27 chain 6148 chr21 48129895 + 19092237 19092303 SVA_F 1814 - 743 809 135466 66 chain 1676 chr21 48129895 + 19092344 19092424 SVA_F 1814 - 862 940 142507 54 1 0 8 2 1 15 chain 22432 chr21 48129895 + 19092424 19092772 SVA_F 1814 - 601 852 118330 224 97 0 27 chain 6951 chr21 48129895 + 19092772 19092849 SVA_F 1814 - 549 626 140870 77 chain 5177 chr21 48129895 + 19116796 19116886 MER39B 650 - 121 214 193270 53 15 18 22 chain 375187 chr21 48129895 + 19120388 19124585 L1PA4 6152 - 2 4197 10912 4 1 0 844 0 1 642 1 0 81 3 0 1401 1 0 12 1 0 778 0 4 428 chain 102480 chr21 48129895 + 19129042 19130468 LTR12C 1709 - 0 1709 36137 84 1 0 322 0 7 68 20 13 81 5 211 20 0 41 25 1 0 42 9 46 416 1 0 35 40 42 172 0 17 19 27 10 38 chain 537813 chr21 48129895 + 19142070 19148518 L1PA7 6471 - 2 6471 3179 10 2 0 89 7 6 250 9 0 209 5 7 97 0 4 94 0 1 897 0 2 127 0 2 36 7 0 60 0 1 291 0 10 431 4 0 266 0 3 23 0 4 52 1 0 604 0 4 194 4 1 54 3 0 8 0 6 922 0 2 50 0 1 387 0 6 47 0 1 433 0 1 369 2 3 59 2 1 5 0 1 338 chain 49362 chr21 48129895 + 19173215 19174169 L1PA7 6471 + 5808 6470 59478 344 0 47 26 301 0 83 41 1 147 0 2 12 chain 11691 chr21 48129895 + 19180936 19181133 MSTA-int 1630 + 1428 1630 153517 29 20 25 33 1 0 49 8 9 57 chain 8940 chr21 48129895 + 19195446 19195551 THE1B 368 + 243 348 165925 105 chain 6147 chr21 48129895 + 19207448 19207525 LTR23 429 - 349 426 184011 77 chain 6000 chr21 48129895 + 19220891 19221023 MLT1H 522 - 352 485 185241 47 28 30 34 10 9 13 chain 3875 chr21 48129895 + 19227005 19227051 L1MB8 1703 - 152 198 209227 46 chain 152782 chr21 48129895 + 19239314 19241195 L1PA8A 6298 + 4396 6290 24253 432 0 1 6 2 1 365 12 19 111 0 1 156 0 3 42 0 1 45 0 1 11 0 1 570 17 16 112 chain 17772 chr21 48129895 + 19254170 19254412 L1PA7 6471 + 6224 6469 133501 9 0 4 65 1 0 5 13 13 149 chain 5572 chr21 48129895 + 19264030 19264109 MADE1 96 + 0 95 189350 42 1 17 36 chain 344149 chr21 48129895 + 19266883 19271920 L1PB1 5432 - 20 4802 11779 8 1 0 13 1 0 14 0 9 18 9 7 11 1 0 5 7 5 25 14 1 16 1 0 43 1 0 16 2 1 45 8 6 12 5 1 9 1 0 9 1 0 23 17 15 215 11 9 28 0 2 31 24 21 105 306 0 57 4 0 251 0 1 70 0 23 118 1 5 170 0 1 37 1 0 232 0 4 153 6 4 137 4 0 117 3 0 300 0 1 122 0 8 43 1 0 87 0 1 7 13 14 34 3 4 4 1 0 109 1 0 73 1 0 8 4 0 46 0 2 81 0 4 246 3 5 240 0 1 213 54 55 53 0 4 145 11 4 51 5 6 583 0 9 46 0 38 32 chain 25475 chr21 48129895 + 19271997 19272403 LTR7 482 - 5 482 102333 185 0 31 40 6 8 33 51 0 28 9 98 54 chain 214658 chr21 48129895 + 19280410 19282797 L1PA3long 6157 - 0 2397 18189 148 0 5 6 5 0 100 1 0 1108 5 10 32 0 6 982 chain 24450 chr21 48129895 + 19283402 19283678 AluY 311 + 29 306 107802 103 0 1 173 chain 79345 chr21 48129895 + 19305035 19306003 LTR5_Hs 974 - 0 974 43888 103 2 0 37 7 14 6 1 0 528 0 1 154 9 10 121 chain 3544 chr21 48129895 + 19306003 19306042 L1PB4 2604 + 2495 2534 214646 39 chain 23169 chr21 48129895 + 19318456 19318728 AluYf4 310 + 4 272 114822 123 2 0 138 2 0 7 chain 73840 chr21 48129895 + 19343056 19343947 L1PA7 6471 - 5 896 46508 7 2 0 110 0 1 32 0 1 687 0 1 6 1 0 46 chain 149166 chr21 48129895 + 19343947 19345704 L1PA7 6471 + 3785 5556 24734 218 8 0 233 0 13 91 0 7 706 0 1 263 0 1 238 chain 50699 chr21 48129895 + 19358493 19359123 L1PA7 6471 - 10 642 58504 151 1 2 367 1 2 110 chain 55091 chr21 48129895 + 19360717 19361315 L1PA3long 6157 - 0 598 55652 598 chain 126416 chr21 48129895 + 19370205 19371777 THE1A-int 1579 - 0 1579 28966 272 0 1 577 23 25 264 0 2 44 0 1 90 0 1 253 1 0 4 0 1 44 chain 28133 chr21 48129895 + 19375158 19375463 AluYf4 310 + 0 305 92532 305 chain 21436 chr21 48129895 + 19381961 19382217 AluY 311 + 38 295 122383 94 0 1 162 chain 11130 chr21 48129895 + 19391692 19391914 L1MA3 4352 + 4114 4328 155698 38 15 16 12 1 0 20 0 2 33 4 0 10 16 13 24 1 0 6 1 0 28 1 0 12 chain 37290 chr21 48129895 + 19423248 19423677 L1PA7 6471 - 1 429 73096 243 1 0 185 chain 6143 chr21 48129895 + 19442444 19442542 L1PB1 5432 + 5336 5427 184047 10 2 0 26 1 0 19 1 0 13 1 0 15 1 0 4 1 0 4 chain 5724 chr21 48129895 + 19468340 19468418 MER11A 1151 + 154 230 187892 39 1 0 6 1 0 31 chain 2107 chr21 48129895 + 19469071 19469118 MER11A 1151 + 812 881 237574 22 11 33 14 chain 56262 chr21 48129895 + 19484557 19485429 L1MA1 4479 + 3352 4190 54988 36 3 0 69 11 10 35 13 11 201 1 0 24 10 8 9 1 0 70 1 0 21 2 0 13 1 0 88 1 0 5 7 4 122 1 0 27 3 0 37 1 0 9 1 0 11 4 1 9 10 3 15 chain 12028 chr21 48129895 + 19493507 19493710 MER30 238 - 0 238 152083 110 12 29 37 22 0 7 0 40 15 chain 27719 chr21 48129895 + 19522187 19522553 MER4E 760 - 8 371 93972 308 7 6 28 1 0 3 1 0 18 chain 28832 chr21 48129895 + 19543515 19543823 AluYb8 318 - 11 318 89755 202 1 0 105 chain 38143 chr21 48129895 + 19557354 19557830 L1PA7 6471 - 13 489 71924 148 12 13 256 6 5 54 chain 4413 chr21 48129895 + 19567865 19567924 L1MA8 2339 - 285 343 201757 44 2 1 13 chain 22630 chr21 48129895 + 19578644 19579180 L1M1 2793 - 108 640 117421 12 1 0 45 10 9 81 158 142 106 1 13 29 35 37 58 chain 33510 chr21 48129895 + 19579220 19579601 L1PA6 6164 - 15 397 78394 133 0 1 248 chain 6196 chr21 48129895 + 19633620 19633690 L1PA2 6032 + 5962 6032 183609 70 chain 14087 chr21 48129895 + 19637628 19637976 L1PB1 5432 + 5103 5418 144272 11 1 0 21 1 0 12 1 0 11 4 0 7 7 5 43 13 12 10 2 1 45 1 0 15 69 51 23 1 0 21 1 0 13 1 0 14 chain 57502 chr21 48129895 + 19643946 19644651 L1PA8A 6298 - 7 725 54238 349 3 0 94 2 18 257 chain 50262 chr21 48129895 + 19680919 19681499 L1PA7 6471 - 1 590 58816 12 0 9 271 1 0 257 0 1 39 chain 54974 chr21 48129895 + 19681500 19682169 L1PA7 6471 + 5236 5883 55720 356 28 7 22 1 0 262 chain 8042 chr21 48129895 + 19687707 19687812 L1PA5 6144 + 6030 6137 170797 8 0 1 41 3 4 53 chain 9415 chr21 48129895 + 19687881 19687988 L1PA5 6144 + 6030 6137 163483 107 chain 9649 chr21 48129895 + 19688057 19688164 L1PA5 6144 + 6030 6137 162353 107 chain 14459 chr21 48129895 + 19723681 19724053 THE1D 372 + 0 372 143021 52 186 186 134 chain 30103 chr21 48129895 + 19746508 19746821 AluYb8 318 + 0 313 84476 313 chain 24054 chr21 48129895 + 19774575 19774862 AluSc 308 + 9 297 110020 52 0 1 235 chain 7865 chr21 48129895 + 19791842 19792000 MER65C 458 + 300 458 171905 6 1 0 94 39 40 18 chain 84817 chr21 48129895 + 19800561 19801717 THE1A-int 1579 + 394 1579 41585 15 0 1 166 0 1 50 30 33 55 15 24 191 0 1 60 0 4 180 3 4 41 6 0 170 0 14 169 0 1 5 chain 126401 chr21 48129895 + 19807420 19808807 L1PA3long 6157 - 1973 3360 28972 1387 chain 178773 chr21 48129895 + 19808807 19810803 L1PA3long 6157 + 4195 6157 21096 341 34 0 643 1 0 4 0 1 973 chain 28664 chr21 48129895 + 19812409 19812711 AluYg6 310 + 0 302 90473 302 chain 35042 chr21 48129895 + 19816511 19816963 L1PA7 6471 + 6021 6468 76129 299 1 0 138 4 0 10 chain 22186 chr21 48129895 + 19835072 19835339 L1P2 5180 + 1691 1956 119417 31 3 0 95 0 1 138 chain 333354 chr21 48129895 + 19835381 19839710 L1PA7 6471 + 2449 6446 12073 192 36 4 182 0 1 67 0 3 345 312 0 254 1 0 80 0 3 1917 3 1 116 0 3 179 0 2 477 1 3 95 0 1 72 chain 7541 chr21 48129895 + 19851851 19851946 L1PA7 6471 + 5605 5698 173927 16 2 0 77 chain 48225 chr21 48129895 + 19851946 19852504 L1PA7 6471 + 5700 6258 60299 558 chain 11694 chr21 48129895 + 19866273 19866413 L1PA5 6144 + 6007 6144 153505 132 3 0 5 chain 89522 chr21 48129895 + 19874722 19875806 L1PA7 6471 + 4175 5265 39802 496 0 4 73 0 1 280 17 18 218 chain 37433 chr21 48129895 + 19875818 19876269 L1PA7 6471 + 5265 5718 72919 349 0 3 81 0 2 12 3 0 6 chain 41224 chr21 48129895 + 19876276 19876764 L1PA7 6471 + 5728 6217 67619 411 7 8 70 chain 21134 chr21 48129895 + 19876765 19877009 L1PA7 6471 + 6217 6461 123433 244 chain 15198 chr21 48129895 + 19887499 19887755 MER30 238 + 0 237 140780 18 40 18 64 11 14 123 chain 73985 chr21 48129895 + 19928241 19929179 L1PA8A 6298 - 1058 2008 46519 136 1 3 31 6 0 11 10 14 83 0 12 255 1 2 266 1 0 137 chain 77004 chr21 48129895 + 19929180 19930213 L1PA8A 6298 + 5247 6290 44965 37 9 21 4 1 0 4 0 1 175 2 1 78 1 3 572 46 43 104 chain 21300 chr21 48129895 + 19933658 19933915 LTR5_Hs 974 - 717 974 122864 257 chain 507640 chr21 48129895 + 19934691 19940989 HERVK-int 6823 - 241 6675 6356 6 5 0 7 1 0 6 1 0 17 35 26 12 1 0 4 6 5 21 1 0 5 1 0 8 1 0 7 11 5 10 10 6 10 1 0 3 1 0 7 8 3 30 2 0 11 3 1 14 1 0 12 2 0 9 172 101 5 1 0 8 1 0 3 2 0 20 1 0 11 17 11 21 1 0 10 3 1 74 1 0 4 1 0 7 1 0 4 3 0 49 1 0 124 1 0 36 1 0 58 10 298 3658 1 0 5 7 2 371 1 0 438 1 0 311 1 0 19 1 0 30 2 0 204 1 0 306 chain 75353 chr21 48129895 + 19940997 19941962 LTR5_Hs 974 - 3 974 45843 100 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 12618 chr21 48129895 + 19947801 19948025 L1PB2 3958 - 3684 3888 149781 45 4 1 49 1 0 7 1 0 4 3 0 30 2 0 28 12 7 19 5 0 14 chain 8923 chr21 48129895 + 19965635 19965736 L1PA7 6471 - 4 105 166012 101 chain 44987 chr21 48129895 + 19968982 19969500 L1PA5 6144 + 5596 6132 63069 214 1 2 135 0 17 168 chain 98472 chr21 48129895 + 19970835 19972036 L1PA7 6471 - 26 1252 37167 129 2 0 6 1 3 170 1 0 26 0 18 247 3 4 66 0 4 155 0 3 395 chain 16727 chr21 48129895 + 20007110 20007439 THE1C 375 + 2 336 136324 67 41 40 66 56 62 99 chain 24508 chr21 48129895 + 20007475 20007795 L1PA14 3548 + 1122 1444 107503 135 1 2 95 1 2 88 chain 12698 chr21 48129895 + 20017683 20017875 MER4A 717 - 321 717 149453 143 0 204 19 1 0 4 7 8 18 chain 13400 chr21 48129895 + 20059156 20059534 THE1B 368 - 0 368 146720 47 12 10 5 0 1 27 128 117 38 17 18 14 10 11 80 chain 21921 chr21 48129895 + 20066356 20066700 THE1B 368 - 0 368 120541 49 9 17 109 2 0 25 1 0 27 19 35 65 0 5 21 2 0 15 chain 8979 chr21 48129895 + 20079056 20079181 Tigger2a 444 + 67 194 165720 36 8 10 81 chain 24495 chr21 48129895 + 20097623 20097892 L1PA4 6152 + 5874 6143 107570 269 chain 7708 chr21 48129895 + 20098324 20098550 L1MA4A 3247 + 494 716 172882 56 40 38 27 0 1 13 66 63 24 chain 3035 chr21 48129895 + 20114869 20114907 MER53 195 - 34 76 224293 26 0 4 12 chain 28701 chr21 48129895 + 20123891 20124197 AluYk12 309 - 3 309 90327 306 chain 64667 chr21 48129895 + 20125061 20125839 LTR17 781 - 2 781 50714 5 0 1 445 1 2 17 10 0 181 0 9 119 chain 366570 chr21 48129895 + 20126153 20130479 HERV17-int 4347 - 0 4335 11196 134 0 7 568 28 27 5 0 1 44 5 7 871 12 14 440 0 1 630 1 0 251 1 0 229 4 11 432 0 1 13 4 5 361 5 0 156 1 0 27 2 0 34 1 0 51 4 3 12 chain 60769 chr21 48129895 + 20132116 20132866 LTR17 781 - 31 781 52440 422 0 1 18 10 0 177 15 24 108 chain 51180 chr21 48129895 + 20160555 20161119 L1PA4 6152 - 713 1277 58201 564 chain 62853 chr21 48129895 + 20161119 20161825 L1PA4 6152 + 5445 6152 51508 428 0 1 278 chain 39901 chr21 48129895 + 20176478 20176985 LTR10D 510 + 0 510 69453 64 11 15 22 1 0 130 6 5 26 0 1 247 chain 67518 chr21 48129895 + 20180751 20181616 HERVL-int 5654 + 4787 5654 49436 202 0 1 378 2 0 50 19 22 214 chain 3865 chr21 48129895 + 20188061 20188109 MSTA 426 + 4 52 209369 48 chain 130130 chr21 48129895 + 20193229 20194905 L1PA8 5853 - 0 1669 28061 93 1 0 16 1 0 44 20 18 72 2 0 48 2 1 30 10 11 274 0 3 156 4 1 76 2 0 10 0 1 29 1 0 162 14 13 387 0 1 171 0 1 51 chain 62111 chr21 48129895 + 20206120 20206931 L1PA8A 6298 - 8 828 51847 135 1 0 4 3 4 15 0 7 45 5 6 89 0 2 196 0 1 32 0 1 263 4 1 19 chain 45800 chr21 48129895 + 20206955 20207499 L1PA8A 6298 + 4888 5437 62235 455 0 5 89 chain 5343 chr21 48129895 + 20225192 20225260 L1MDa 1598 + 495 563 191614 68 chain 544694 chr21 48129895 + 20242395 20248417 L1PA3long 6157 - 0 6153 2108 2212 0 1 430 0 1 2609 0 128 613 25 26 133 chain 33491 chr21 48129895 + 20256507 20257143 L1PB1 5432 - 10 594 78422 15 3 1 5 0 1 9 1 0 21 1 0 16 10 8 14 9 6 18 8 4 8 3 0 16 1 0 44 1 0 17 1 0 38 15 13 9 2 0 3 2 0 12 1 0 6 1 0 24 59 32 155 0 1 88 chain 7973 chr21 48129895 + 20319115 20319236 L1PA8A 6298 - 385 506 171209 29 1 7 9 7 1 75 chain 96575 chr21 48129895 + 20344575 20346006 L1PA11 4918 + 3 1397 37674 38 3 1 36 79 41 9 2 0 53 1 0 32 2 0 3 1 0 59 0 1 65 1 0 73 7 9 157 0 1 88 1 0 81 17 2 258 0 1 90 5 22 34 0 1 35 0 1 24 0 1 98 3 4 30 1 0 33 1 2 11 chain 24353 chr21 48129895 + 20361239 20361520 L1PA7 6471 - 7 332 108355 129 0 44 152 chain 55734 chr21 48129895 + 20381166 20381764 L1HS 6032 + 5432 6030 55280 598 chain 384058 chr21 48129895 + 20444060 20448242 L1PA2 6032 - 1 4185 10641 858 0 1 1355 0 1 1969 chain 76070 chr21 48129895 + 20475663 20476642 LTR5B 1012 + 0 1010 45435 13 0 4 70 0 1 46 0 14 341 1 0 85 0 3 25 1 3 117 17 18 18 1 6 239 0 2 5 chain 51755 chr21 48129895 + 20478715 20479283 L1PA5 6144 - 689 1257 57786 568 chain 59645 chr21 48129895 + 20479283 20479964 L1PA5 6144 + 5441 6144 53024 552 0 22 129 chain 5369 chr21 48129895 + 20492141 20492222 LTR72 515 + 7 95 191315 62 6 13 13 chain 28303 chr21 48129895 + 20493569 20493868 AluYa5 310 + 0 300 91936 14 0 1 285 chain 22914 chr21 48129895 + 20500631 20500926 AluY 311 + 10 303 116034 45 5 2 69 0 1 176 chain 4452 chr21 48129895 + 20515121 20515408 MER34 540 + 152 484 201320 21 219 264 47 chain 326259 chr21 48129895 + 20521813 20525534 L1PA5 6144 + 2401 6138 12335 893 0 2 951 0 1 44 7 9 54 0 1 302 1 0 490 0 8 192 0 1 170 0 2 460 1 6 12 5 0 139 chain 20203 chr21 48129895 + 20535411 20535679 AluSc 308 - 40 308 126520 118 0 3 6 8 5 136 chain 26091 chr21 48129895 + 20553291 20553610 LTR14C 587 - 0 319 99660 319 chain 23422 chr21 48129895 + 20555250 20555528 L1PA7 6471 + 6192 6469 113524 92 1 0 185 chain 26578 chr21 48129895 + 20599180 20599480 L1PA4 6152 + 5850 6151 97731 239 0 1 61 chain 11997 chr21 48129895 + 20599581 20599756 THE1D 372 + 196 372 152213 136 19 20 20 chain 52232 chr21 48129895 + 20621933 20622718 L1PB1 5432 - 155 925 57477 39 2 1 12 9 8 31 0 1 17 2 0 10 37 31 10 6 1 11 1 2 45 5 7 142 2 0 28 0 2 75 1 0 178 3 0 119 chain 52184 chr21 48129895 + 20623574 20624455 L1PB 1623 + 117 978 57508 52 4 1 17 1 0 4 3 1 12 0 1 64 1 0 11 0 1 117 2 1 13 2 1 69 9 8 16 28 32 47 47 25 62 0 4 34 0 8 5 8 0 73 6 7 15 6 7 153 chain 7967 chr21 48129895 + 20649829 20649958 MER21A 919 - 763 892 171239 30 2 0 67 14 16 16 chain 13028 chr21 48129895 + 20688651 20688935 THE1D 372 - 0 372 148141 33 3 0 66 9 5 18 37 44 14 25 32 15 10 91 54 chain 28796 chr21 48129895 + 20700548 20700856 AluYa5 310 + 0 307 89911 97 1 0 210 chain 28342 chr21 48129895 + 20703509 20703815 AluYb8 318 + 0 306 91790 306 chain 29523 chr21 48129895 + 20747734 20748047 AluYb9 318 + 0 313 86553 313 chain 73793 chr21 48129895 + 20748220 20749048 L1PA4 6152 - 11 839 46621 828 chain 53979 chr21 48129895 + 20749048 20749645 L1PA4 6152 + 4709 5308 56378 592 0 2 5 chain 3631 chr21 48129895 + 20752477 20752518 L1MB8 1703 - 195 236 213124 41 chain 512238 chr21 48129895 + 20796189 20802626 L1PA7 6471 + 16 6469 5947 284 0 1 86 18 7 14 1 3 287 7 5 283 7 8 101 0 14 359 0 1 19 0 1 150 5 0 999 0 4 62 0 4 222 2 0 55 0 1 37 5 0 957 2 1 4 0 1 251 5 6 339 0 3 131 0 2 386 2 1 129 0 2 169 0 1 101 0 3 111 1 0 349 6 7 249 0 1 242 chain 29081 chr21 48129895 + 20802934 20803241 AluYb8 318 - 11 318 88638 307 chain 40061 chr21 48129895 + 20842975 20843479 MER9a3 513 + 0 513 69231 18 0 12 403 0 1 12 4 0 67 chain 3232 chr21 48129895 + 20850163 20850203 THE1C-int 1605 - 1449 1489 220390 40 chain 3588 chr21 48129895 + 20862884 20862927 MER58D 378 + 316 359 213863 43 chain 105653 chr21 48129895 + 20865742 20867130 LTR12C 1709 + 0 1709 35341 205 0 12 70 0 14 37 0 43 83 9 7 133 1 4 111 0 118 82 0 119 33 0 47 97 44 13 308 1 0 91 1 0 82 chain 6877 chr21 48129895 + 20907788 20908059 MLT1B 390 + 65 351 178381 25 0 1 4 4 3 10 159 174 69 chain 43427 chr21 48129895 + 20908169 20908678 L1PA5 6144 - 3 509 64900 57 1 0 12 1 0 239 1 0 198 chain 20390 chr21 48129895 + 20909277 20909514 L1PA5 6144 - 0 237 125929 237 chain 22041 chr21 48129895 + 21013080 21013330 L1PA7 6471 - 17 268 120066 129 0 1 121 chain 24709 chr21 48129895 + 21021835 21022110 AluY 311 + 10 286 106386 122 0 1 153 chain 5532 chr21 48129895 + 21022523 21022597 MADE1 96 - 0 96 189733 32 0 22 42 chain 70792 chr21 48129895 + 21032454 21033422 L1PBa 3878 + 1201 2154 48017 242 17 15 20 5 7 42 1 0 78 29 15 134 7 6 90 1 2 302 chain 58602 chr21 48129895 + 21045847 21046494 L1PA5 6144 + 5485 6132 53638 647 chain 23603 chr21 48129895 + 21049493 21049780 LTR17 781 - 0 308 112567 7 1 0 41 1 23 237 chain 8188 chr21 48129895 + 21051328 21051429 LTR9B 643 + 0 101 170022 101 chain 218341 chr21 48129895 + 21104844 21107332 L1PA5 6144 - 15 2525 17983 123 0 7 650 0 1 47 0 4 44 0 1 812 0 2 90 0 4 634 0 3 88 chain 83216 chr21 48129895 + 21113686 21114605 L1PA3long 6157 - 931 1851 42245 61 0 2 498 1 0 359 chain 74447 chr21 48129895 + 21114605 21115432 L1PA3long 6157 + 5329 6157 46198 685 0 1 142 chain 14192 chr21 48129895 + 21122611 21122848 Tigger3b 1229 + 984 1229 143911 26 1 8 126 33 34 51 chain 77446 chr21 48129895 + 21151630 21152965 L1PA7 6471 - 6 1263 44759 104 0 1 45 1 0 29 0 1 5 2 1 142 0 1 94 313 257 82 2 0 44 0 5 9 28 1 23 1 0 21 0 1 101 1 2 288 chain 119831 chr21 48129895 + 21155512 21157100 THE1B-int 1605 - 1 1605 31110 112 2 0 375 13 0 222 0 6 164 41 41 85 0 1 131 10 35 132 1 0 300 chain 24282 chr21 48129895 + 21161240 21161557 L1PA6 6164 - 2 312 108760 6 4 0 236 2 0 50 1 0 18 chain 15047 chr21 48129895 + 21172786 21173015 L1PA8 5853 - 0 228 141182 93 6 5 14 6 5 43 1 0 14 6 8 46 chain 355544 chr21 48129895 + 21184905 21189012 L1PA5 6144 + 2009 6134 11461 185 0 4 109 7 0 248 0 4 543 1 0 89 0 1 60 0 2 248 0 1 172 1 2 158 0 8 400 0 1 97 0 4 1634 5 4 13 0 1 137 chain 24124 chr21 48129895 + 21264102 21264385 AluY 311 + 8 293 109618 39 0 1 84 0 1 160 chain 112331 chr21 48129895 + 21273596 21274976 L1PA7 6471 - 4 1424 33581 139 0 1 383 0 1 98 4 7 400 1 36 355 chain 76042 chr21 48129895 + 21274976 21275915 L1PA7 6471 + 4109 5038 45408 452 6 5 66 0 1 180 0 4 136 2 0 37 21 9 39 chain 5475 chr21 48129895 + 21291700 21291766 L1MC1 2226 + 627 693 190251 66 chain 25065 chr21 48129895 + 21315851 21316237 THE1D 372 - 0 372 104483 164 20 23 110 19 0 18 4 6 51 chain 16561 chr21 48129895 + 21318223 21318405 L1PA3long 6157 - 0 182 136768 182 chain 10133 chr21 48129895 + 21319099 21319229 L1PA11 4918 - 2376 2518 159935 54 0 1 12 0 11 64 chain 22935 chr21 48129895 + 21324964 21325283 L1PA10 4194 - 33 350 115934 11 1 0 34 3 0 40 1 0 30 1 4 4 1 0 26 1 2 166 chain 225238 chr21 48129895 + 21330993 21333473 L1PA4 6152 - 1 2483 17577 2034 0 2 446 chain 51253 chr21 48129895 + 21333473 21334039 L1PA4 6152 + 3093 3659 58016 566 chain 29379 chr21 48129895 + 21356303 21356683 MLT2A1 477 - 93 477 87177 61 1 0 150 0 4 25 1 2 142 chain 25228 chr21 48129895 + 21374151 21374448 AluY 311 + 0 293 103594 123 2 0 10 3 1 159 chain 37167 chr21 48129895 + 21393826 21394273 L1PA7 6471 - 6 453 73284 150 1 0 6 1 2 289 chain 118186 chr21 48129895 + 21409121 21410648 THE1B-int 1605 + 28 1589 31732 404 0 25 218 0 3 16 3 11 9 2 0 354 8 7 126 2 3 123 0 1 206 1 0 55 chain 23445 chr21 48129895 + 21415827 21416243 MER57A1 433 + 0 433 113406 71 9 11 177 12 33 35 7 9 16 55 46 25 0 1 9 chain 54947 chr21 48129895 + 21420589 21421367 LTR17 781 - 24 781 55744 65 29 7 142 1 11 119 16 10 76 1 0 134 15 14 118 1 0 61 chain 21667 chr21 48129895 + 21426947 21427204 AluSg 306 + 29 286 121510 257 chain 3320 chr21 48129895 + 21429585 21429620 MLT2B2 565 + 61 96 218599 35 chain 123110 chr21 48129895 + 21448733 21450075 L1PA2 6032 - 2 1342 30004 156 3 0 183 0 1 1000 chain 27556 chr21 48129895 + 21451263 21451590 HSMAR1 1287 + 953 1280 94483 317 1 0 4 0 1 5 chain 3081 chr21 48129895 + 21465774 21465828 MER8 282 - 20 73 223303 23 11 10 20 chain 181364 chr21 48129895 + 21474892 21477178 HERVL-int 5654 + 0 2290 20864 102 1 2 817 0 1 17 0 3 5 15 12 212 0 2 60 1 0 298 0 1 301 17 16 212 3 4 225 chain 66368 chr21 48129895 + 21499777 21500677 L1P1 4361 - 737 1818 49922 223 81 261 21 1 2 574 chain 7063 chr21 48129895 + 21500000 21500081 L1P3 4156 - 432 513 174162 81 chain 45133 chr21 48129895 + 21500677 21501207 L1PA6 6164 + 5617 6149 62891 43 1 3 486 chain 23659 chr21 48129895 + 21505235 21505588 MER51B 395 + 0 388 112261 29 18 37 31 1 7 173 2 0 19 1 13 79 chain 14372 chr21 48129895 + 21524297 21524480 L1PBb 2709 + 993 1176 143296 183 chain 122441 chr21 48129895 + 21529899 21531327 L1PA5 6144 - 0 1429 30238 11 3 1 194 0 1 490 0 1 653 1 2 76 chain 23202 chr21 48129895 + 21534852 21535104 L1PA3long 6157 + 5905 6157 114676 252 chain 3611 chr21 48129895 + 21557951 21557999 L1MC4 1079 - 281 328 213470 32 1 0 15 chain 137341 chr21 48129895 + 21571817 21573283 L1HS 6032 - 2 1468 26582 1466 chain 51644 chr21 48129895 + 21573283 21573836 L1HS 6032 + 4059 4612 57496 553 chain 48328 chr21 48129895 + 21577246 21577868 LTR12 884 + 0 884 60220 30 5 6 43 0 132 144 0 22 192 1 108 207 chain 3077 chr21 48129895 + 21585577 21585623 LTR25 836 - 370 424 223372 16 2 10 28 chain 217309 chr21 48129895 + 21607305 21610112 L1PA8A 6298 - 7 2838 18040 6 0 1 128 1 2 110 6 13 540 0 4 101 0 4 61 2 1 4 0 1 253 0 1 208 28 30 6 2 0 412 6 10 265 0 2 159 1 2 172 5 4 45 0 3 45 3 0 238 chain 43762 chr21 48129895 + 21610121 21610681 L1PA8A 6298 + 2876 3435 64495 79 8 0 14 0 4 288 0 2 101 2 3 68 chain 23608 chr21 48129895 + 21636876 21637151 AluSp 311 - 35 310 112530 275 chain 36486 chr21 48129895 + 21643212 21643681 LTR2B 499 + 0 499 74258 14 0 1 39 0 11 4 1 0 42 0 19 176 0 1 10 1 0 182 chain 5291 chr21 48129895 + 21648136 21648388 L1MB5 1630 + 1362 1613 192103 30 1 0 7 5 7 31 4 0 16 123 126 16 7 6 12 chain 9334 chr21 48129895 + 21653273 21653414 MER57F 435 - 290 429 163884 86 15 13 40 chain 44861 chr21 48129895 + 21665013 21665522 MER9a2 513 - 0 510 63219 363 0 1 146 chain 41174 chr21 48129895 + 21674306 21674812 MLT2A2 560 + 53 560 67676 296 0 1 210 chain 19346 chr21 48129895 + 21677815 21678043 L1PA7 6471 - 7 235 129085 228 chain 29841 chr21 48129895 + 21688441 21688754 AluYb8 318 - 5 318 85310 313 chain 7153 chr21 48129895 + 21703006 21703333 MSTC 436 - 12 325 176385 35 164 162 54 16 0 17 21 25 20 chain 4044 chr21 48129895 + 21738851 21738898 Tigger2 2703 - 1724 1772 206752 4 0 1 43 chain 124537 chr21 48129895 + 21763369 21764867 L1PA7 6471 - 26 1517 29531 12 9 3 424 7 0 112 0 2 273 1 3 507 0 2 153 chain 52388 chr21 48129895 + 21765403 21766117 L1PA8 5853 - 0 707 57364 93 1 0 19 2 1 47 1 0 15 2 0 50 4 5 15 2 0 39 10 9 414 chain 29807 chr21 48129895 + 21775636 21776041 LTR12_ 688 - 1 688 85414 76 0 129 20 1 113 257 0 41 51 chain 25152 chr21 48129895 + 21801564 21801886 THE1A-int 1579 - 6 328 103998 11 1 0 23 1 2 286 chain 32589 chr21 48129895 + 21802190 21802667 THE1A-int 1579 + 28 478 79876 75 4 7 59 2 1 5 0 1 142 40 10 150 chain 178518 chr21 48129895 + 21807829 21810240 L1PA10 4194 + 1680 4144 21118 146 1 0 163 1 0 4 1 0 5 0 2 187 0 1 36 1 5 180 0 1 91 2 1 115 5 3 30 1 0 31 6 30 76 0 11 38 10 9 329 1 0 46 1 0 49 0 6 216 6 12 259 1 0 4 0 1 160 0 12 12 2 1 164 3 0 28 chain 2866 chr21 48129895 + 21813327 21813361 MLT1C 463 + 405 439 227568 34 chain 22176 chr21 48129895 + 21847913 21848197 AluY 311 + 0 301 119463 52 0 16 64 7 8 161 chain 30820 chr21 48129895 + 21868229 21868589 L1PA5 6144 - 9 369 82836 360 chain 27324 chr21 48129895 + 21870430 21870783 THE1A 353 - 0 353 95194 181 0 1 61 2 1 109 chain 64361 chr21 48129895 + 21870788 21871593 THE1A-int 1579 - 5 1579 50858 170 1 0 90 0 770 544 chain 11808 chr21 48129895 + 21884976 21885161 MER30 238 - 4 207 152991 83 13 43 9 12 0 68 chain 11291 chr21 48129895 + 21890353 21890479 L1PA6 6164 - 4 130 155084 126 chain 16195 chr21 48129895 + 21956589 21956802 LTR12F 595 + 0 356 137771 72 0 143 141 chain 24485 chr21 48129895 + 21965250 21965671 LTR7B 505 - 10 505 107630 38 23 22 26 1 0 16 4 5 26 40 41 41 0 2 26 6 68 69 0 10 105 chain 38045 chr21 48129895 + 21966747 21967167 L1PA4 6152 - 16 436 72066 420 chain 4260 chr21 48129895 + 21967951 21968022 MER34 540 - 430 506 203743 49 9 14 13 chain 20994 chr21 48129895 + 22014724 22015002 L1PA7 6471 + 6191 6468 123940 104 0 2 10 1 2 111 8 7 28 3 0 13 chain 7639 chr21 48129895 + 22058697 22058803 L1MC2 1988 + 1554 1660 173292 83 2 0 5 0 2 16 chain 21646 chr21 48129895 + 22104970 22105249 AluY 311 + 0 283 121586 70 0 3 59 11 12 139 chain 35472 chr21 48129895 + 22144208 22144650 L1PA8A 6298 + 5816 6264 75590 190 1 0 72 1 8 178 chain 9125 chr21 48129895 + 22152406 22152535 MER61D 487 - 215 345 164946 72 5 6 52 chain 11375 chr21 48129895 + 22154165 22154318 AluSc8 310 + 72 227 154798 60 0 3 19 2 1 72 chain 34059 chr21 48129895 + 22154318 22154835 LTR10F 562 + 0 562 77529 138 43 0 23 3 70 10 2 26 11 2 0 16 1 0 268 chain 21270 chr21 48129895 + 22198550 22198915 THE1C 375 - 0 364 122957 26 1 0 133 37 30 5 0 2 26 7 11 72 6 7 26 1 0 13 1 2 11 chain 25719 chr21 48129895 + 22210095 22210403 AluSp 311 - 4 311 101221 179 1 0 128 chain 42631 chr21 48129895 + 22211056 22211571 MER9a2 513 + 0 513 65862 13 2 0 202 0 1 200 0 1 39 2 0 57 chain 9498 chr21 48129895 + 22276917 22277034 L1PB4 2604 + 2428 2546 163084 108 0 1 9 chain 3967 chr21 48129895 + 22277747 22277802 MLT2A1 477 + 420 477 207889 17 1 3 37 chain 76585 chr21 48129895 + 22293121 22294094 L1PA7 6471 - 5 1002 45172 150 7 8 158 0 1 52 10 27 277 9 8 138 0 3 20 0 3 152 chain 330742 chr21 48129895 + 22294099 22298223 L1P3 4156 + 0 4139 12173 180 4 1 70 10 9 62 1 0 37 0 1 40 14 0 78 5 0 170 1 0 5 1 2 326 1 10 887 0 1 241 0 1 395 0 2 119 0 1 512 14 15 199 10 34 90 7 6 52 0 4 52 1 0 505 3 1 5 1 0 26 chain 180218 chr21 48129895 + 22330736 22333362 L1PA8 5853 + 3544 5853 20972 594 3 0 69 0 1 329 3 4 131 1 0 11 0 1 204 320 0 117 22 25 224 0 1 65 1 2 242 1 0 15 0 4 26 2 0 70 1 0 9 1 0 10 2 4 37 7 6 15 2 1 92 chain 2631 chr21 48129895 + 22368524 22368572 MER2 342 - 63 112 231262 26 7 8 15 chain 18176 chr21 48129895 + 22415937 22416196 AluY 311 + 49 310 132393 84 2 0 49 4 5 73 8 9 9 0 2 30 chain 55191 chr21 48129895 + 22420109 22421163 MER4E 760 + 0 760 55591 24 1 0 126 22 26 131 1 0 62 0 2 75 1 0 87 0 1 29 314 16 181 chain 24655 chr21 48129895 + 22421331 22421597 AluYb8 318 - 14 279 106696 136 1 0 129 chain 38665 chr21 48129895 + 22447181 22447654 L1PA7 6471 + 5981 6459 71204 6 0 3 11 0 2 456 chain 4026 chr21 48129895 + 22462420 22462467 MER5A1 166 + 61 108 206989 47 chain 50437 chr21 48129895 + 22521730 22522383 L1PA8 5853 - 0 647 58687 93 1 0 19 2 1 52 1 0 4 1 0 70 6 4 13 0 2 31 1 0 115 1 0 243 chain 3667 chr21 48129895 + 22569748 22569794 MSTA 426 + 358 404 212441 46 chain 15984 chr21 48129895 + 22591372 22591592 MER30 238 + 0 238 138395 106 8 23 68 1 4 37 chain 41834 chr21 48129895 + 22623488 22624041 L1PA8 5853 - 0 594 66846 93 1 0 19 2 1 52 0 13 111 1 0 176 0 31 98 chain 23646 chr21 48129895 + 22624041 22624355 L1PA8A 6298 - 775 1092 112332 23 8 11 283 chain 14895 chr21 48129895 + 22624355 22624585 L1PA8A 6298 + 5514 5745 141643 36 0 1 15 34 34 145 chain 22059 chr21 48129895 + 22635031 22635377 THE1B 368 - 0 368 119974 125 34 45 30 1 0 103 9 21 44 chain 38730 chr21 48129895 + 22638752 22639196 L1PA5 6144 + 5694 6139 71109 61 0 1 383 chain 18059 chr21 48129895 + 22644160 22644362 L1PA5 6144 + 5930 6132 132699 202 chain 4649 chr21 48129895 + 22666396 22666473 MADE1 96 + 3 96 199067 20 10 26 47 chain 34538 chr21 48129895 + 22673704 22674072 L1PA2 6032 - 0 368 76850 368 chain 45635 chr21 48129895 + 22674072 22674562 L1PA2 6032 + 5159 5649 62366 490 chain 8965 chr21 48129895 + 22688591 22688693 L1PA5 6144 - 2 104 165793 102 chain 5750 chr21 48129895 + 22696457 22696523 L1PA5 6144 + 6077 6143 187633 66 chain 13495 chr21 48129895 + 22708720 22708883 L1PA4 6152 + 5976 6143 146368 152 0 4 11 chain 13327 chr21 48129895 + 22719604 22719772 L1MA1 4479 + 3490 3657 146981 29 4 3 135 chain 20850 chr21 48129895 + 22729039 22729304 AluSp 311 + 11 277 124460 37 3 0 5 1 4 167 0 1 52 chain 15343 chr21 48129895 + 22747323 22747493 L1PA3long 6157 + 5987 6157 140361 170 chain 66756 chr21 48129895 + 22767752 22768742 L1PB1 5432 + 3878 4882 49752 221 18 26 263 0 1 98 30 31 86 1 5 20 7 5 40 0 1 38 0 1 90 30 30 4 0 1 4 1 0 39 chain 71627 chr21 48129895 + 22774160 22775162 MER11A 1151 + 0 1151 47641 58 0 100 48 1 3 80 8 5 94 0 1 51 5 6 87 3 5 21 1 0 114 6 9 8 1 0 53 0 4 56 1 0 15 7 41 49 0 9 168 7 6 60 chain 60660 chr21 48129895 + 22791681 22792358 L1PA4 6152 - 0 677 52490 677 chain 8618 chr21 48129895 + 22815304 22815404 L1P1 4361 - 1328 1428 167642 100 chain 27713 chr21 48129895 + 22815406 22815745 L1PA6 6164 + 5815 6154 93995 198 5 6 128 1 0 7 chain 199965 chr21 48129895 + 22816242 22818826 L1PA8A 6298 - 2040 4639 19215 151 0 5 20 0 2 206 1 2 61 0 1 112 2 0 216 0 1 81 0 1 823 1 0 75 1 12 189 8 0 80 0 1 295 6 12 14 16 13 74 1 0 34 3 4 114 chain 152777 chr21 48129895 + 22818833 22820805 L1PA8A 6298 + 4291 6273 24255 334 1 0 36 0 1 152 0 1 4 1 0 128 1 2 5 1 0 40 0 1 66 0 1 228 0 1 43 0 5 150 2 1 49 0 1 527 0 1 32 0 1 78 17 17 77 chain 15565 chr21 48129895 + 22886554 22886816 AluSq 315 + 40 308 139684 91 15 14 7 0 3 78 13 24 21 13 6 24 chain 19118 chr21 48129895 + 22904080 22904328 AluY 311 + 61 297 129771 62 1 0 3 11 0 85 0 1 10 1 0 75 chain 44351 chr21 48129895 + 22943925 22944523 THE1B-int 1605 + 1 625 63758 43 5 6 69 12 11 4 0 1 295 0 25 170 chain 14168 chr21 48129895 + 22962879 22963036 L1PA4 6152 - 9 166 143987 157 chain 3275 chr21 48129895 + 23012019 23012054 L1MA5A 2387 - 2229 2264 219455 35 chain 36622 chr21 48129895 + 23029500 23029911 L1PA5 6144 - 430 841 74065 411 chain 36199 chr21 48129895 + 23029914 23030346 L1PA5 6144 + 5705 6134 74626 105 1 2 17 0 1 159 0 1 20 6 0 124 chain 31744 chr21 48129895 + 23032814 23033160 L1PA2 6032 - 2 348 81256 346 chain 35949 chr21 48129895 + 23033160 23033563 L1P1 4361 + 3927 4328 74958 223 1 0 155 1 0 23 chain 44568 chr21 48129895 + 23078611 23079121 L1PA5 6144 - 1564 2078 63339 235 0 4 275 chain 143110 chr21 48129895 + 23079121 23080707 L1PA5 6144 + 4559 6144 25638 1472 1 0 113 chain 61552 chr21 48129895 + 23080719 23081406 L1P1 4361 - 961 1648 52090 687 chain 51471 chr21 48129895 + 23081406 23081992 L1PA4 6152 + 5563 6151 57993 158 1 3 427 chain 2689 chr21 48129895 + 23104908 23104960 MER46C 351 - 163 204 230355 33 11 0 8 chain 119308 chr21 48129895 + 23117486 23119077 THE1A-int 1579 + 10 1569 31288 228 0 3 18 10 36 196 1 0 97 25 6 123 43 0 199 1 2 392 0 1 258 chain 12877 chr21 48129895 + 23137652 23137809 L1PA4 6152 + 5980 6143 148718 16 0 7 10 1 0 130 chain 16965 chr21 48129895 + 23145603 23145789 L1PA4 6152 + 5792 5978 135680 186 chain 25900 chr21 48129895 + 23151181 23151542 THE1B 368 - 0 368 100438 49 0 10 6 3 1 49 0 1 60 2 0 23 2 1 98 5 6 64 chain 41747 chr21 48129895 + 23177333 23178237 MLT2A2 560 + 0 560 66966 190 3 0 5 4 9 59 355 8 230 0 1 58 chain 18248 chr21 48129895 + 23177594 23177937 THE1B 368 + 0 356 132210 100 21 23 42 74 85 106 chain 4448 chr21 48129895 + 23198533 23198642 MLT1A0 366 + 174 281 201368 20 46 44 43 chain 45845 chr21 48129895 + 23210224 23210724 L1PA3long 6157 - 1153 1654 62018 86 0 1 414 chain 105869 chr21 48129895 + 23210724 23211893 L1PA3long 6157 + 4989 6157 35291 1021 1 0 147 chain 131515 chr21 48129895 + 23274554 23276109 LTR12C 1709 + 0 1709 27743 277 5 0 47 2 0 356 0 159 272 1 0 6 3 1 106 0 5 480 chain 10265 chr21 48129895 + 23282337 23282511 LTR12D 1347 - 595 739 159306 46 43 13 85 chain 32928 chr21 48129895 + 23319680 23320049 L1PA4 6152 - 2 370 79321 330 1 0 38 chain 8950 chr21 48129895 + 23331779 23331999 L1PB1 5432 + 5221 5422 165873 16 1 0 44 1 0 15 76 62 10 1 0 23 1 0 13 1 0 18 chain 30015 chr21 48129895 + 23336892 23337231 LTR14A 344 - 4 344 84756 174 0 1 165 chain 79721 chr21 48129895 + 23355240 23356215 L1PA7 6471 + 5477 6461 43724 144 2 0 335 0 11 494 chain 26089 chr21 48129895 + 23372012 23372351 THE1A 353 - 0 351 99669 34 0 1 37 0 12 159 1 0 108 chain 84425 chr21 48129895 + 23372353 23373382 THE1A-int 1579 - 0 1031 41748 330 0 1 506 2 3 191 chain 34024 chr21 48129895 + 23376116 23376565 MER75 514 + 63 514 77586 181 12 14 256 chain 28270 chr21 48129895 + 23383802 23384205 MLT2A1 477 - 0 477 92046 62 27 35 207 1 5 23 0 1 43 0 57 25 0 4 15 chain 440289 chr21 48129895 + 23384205 23390112 HERVL-int 5654 - 0 5636 9049 34 0 3 186 0 1 214 1 0 4 1 0 125 0 1 21 0 3 414 0 1 175 6 22 508 0 13 49 0 1 221 0 11 389 0 1 110 6 0 22 0 2 48 5 6 66 4 0 132 1 0 125 8 9 95 0 1 15 6 7 83 4 11 232 0 1 23 27 0 268 305 0 104 0 1 7 0 1 47 0 2 50 1 0 440 0 5 237 0 1 7 6 7 59 0 1 110 0 1 76 7 8 345 8 4 22 0 2 243 9 8 141 1 0 54 chain 31964 chr21 48129895 + 23390132 23390557 MLT2A1 477 - 2 477 80913 20 0 3 26 3 41 212 0 4 26 2 3 121 0 4 15 chain 20093 chr21 48129895 + 23401991 23402223 L1PA7 6471 - 1107 1348 126592 177 0 9 55 chain 83466 chr21 48129895 + 23402223 23403312 L1PA7 6471 + 5387 6470 42130 160 0 1 76 5 6 4 0 1 31 0 1 31 0 2 239 1 2 296 10 0 44 4 1 188 chain 25226 chr21 48129895 + 23406579 23406940 THE1B 368 - 0 368 103607 125 3 11 16 18 20 27 1 0 154 2 0 15 chain 4889 chr21 48129895 + 23411818 23411878 L1PA13 3608 - 2877 2937 196384 60 chain 9569 chr21 48129895 + 23417576 23417682 L1PA2 6032 + 5925 6031 162740 106 chain 71421 chr21 48129895 + 23432350 23433182 L1PA7 6471 + 5629 6461 47738 832 chain 17235 chr21 48129895 + 23441342 23441552 L1PA7 6471 - 9 219 134966 210 chain 171165 chr21 48129895 + 23459820 23462154 L1PA10 4194 - 90 2424 21921 371 0 1 493 3 0 5 6 9 94 12 10 131 22 23 175 15 11 159 0 1 176 30 30 189 0 4 131 32 24 97 0 2 119 0 5 74 chain 27050 chr21 48129895 + 23486075 23486434 L1PA8A 6298 + 5924 6290 96113 8 0 3 210 1 3 17 0 2 15 1 2 18 1 0 88 chain 41835 chr21 48129895 + 23496845 23497395 MLT2A2 560 - 5 560 66845 335 19 20 134 0 4 62 chain 45457 chr21 48129895 + 23553418 23553929 L1PA3long 6157 + 5646 6157 62542 511 chain 30541 chr21 48129895 + 23555152 23555579 L1PA8 5853 + 5453 5853 83352 69 0 1 41 1 0 19 21 0 25 2 0 70 2 1 9 2 0 6 0 1 45 2 1 22 1 0 90 chain 28410 chr21 48129895 + 23556137 23556440 AluYg6 310 + 0 303 91541 303 chain 23888 chr21 48129895 + 23562873 23563140 AluY 311 + 36 303 110969 267 chain 44257 chr21 48129895 + 23567127 23567640 MER9a1 513 - 0 513 63871 513 chain 34131 chr21 48129895 + 23569842 23570265 LTR2 463 + 0 417 77436 239 6 0 141 0 1 30 1 0 6 chain 8519 chr21 48129895 + 23577539 23577644 U4 144 + 29 134 168192 105 chain 64178 chr21 48129895 + 23580709 23583410 L1PB1 5432 - 10 1359 50923 20 1 0 9 2 1 22 1 0 24 26 21 17 30 18 8 1 0 46 21 19 49 0 2 5 11 3 14 2 1 5 1 0 22 3 0 11 1660 343 138 1 2 425 0 4 67 6 0 53 chain 29372 chr21 48129895 + 23610320 23610700 THE1C-int 1605 + 0 440 87198 11 6 7 98 0 54 75 0 1 147 1 5 42 chain 28817 chr21 48129895 + 23639800 23640154 THE1A 353 + 0 353 89814 109 2 1 243 chain 68078 chr21 48129895 + 23644116 23644928 L1PA6 6164 - 1442 2243 49177 73 6 0 122 9 3 326 1 0 4 0 1 134 0 1 137 chain 116778 chr21 48129895 + 23644928 23646345 L1PA6 6164 + 4740 6161 32196 26 13 10 5 0 3 527 1 5 510 1 0 166 21 22 147 chain 8939 chr21 48129895 + 23665257 23665357 AluYc 301 + 183 283 165928 100 chain 6100 chr21 48129895 + 23697041 23697123 L1MA4A 3247 - 120 201 184409 20 1 0 61 chain 17332 chr21 48129895 + 23703865 23704205 L1PB1 5432 + 5121 5427 134705 13 1 0 12 1 0 12 17 11 51 2 1 15 1 0 46 1 0 14 2 0 6 16 6 19 2 0 5 1 0 14 2 0 19 1 0 5 1 0 21 1 0 13 1 0 18 2 0 5 chain 61399 chr21 48129895 + 23732105 23732891 LTR17 781 - 0 781 52152 31 0 22 122 1 0 195 17 0 83 1 2 17 10 0 309 chain 29735 chr21 48129895 + 23733534 23733852 AluYb8 318 - 0 318 85711 318 chain 42327 chr21 48129895 + 23743612 23744200 L1PA8 5853 - 0 567 66234 20 19 5 67 2 1 19 2 1 61 2 1 70 2 0 48 1 0 40 1 0 52 0 2 68 2 0 112 chain 16934 chr21 48129895 + 23763605 23763866 L1PA8 5853 + 5608 5853 135766 63 5 0 8 1 0 12 1 0 8 7 0 40 5 4 17 2 1 92 chain 19863 chr21 48129895 + 23768036 23768257 L1PA4 6152 + 5930 6151 127609 221 chain 24463 chr21 48129895 + 23769943 23770269 AluSp 311 + 1 298 107739 124 29 0 173 chain 11546 chr21 48129895 + 23773368 23775492 MER51-int 1546 + 104 1543 154119 38 10 9 34 7 1 8 6 0 16 305 177 22 1401 893 72 53 41 14 49 35 29 3 1 18 19 11 20 chain 30550 chr21 48129895 + 23794500 23794896 MLT2A1 477 - 75 477 83341 25 1 2 203 0 4 25 0 1 142 chain 12762 chr21 48129895 + 23803900 23804157 L1PA16 3655 - 70 278 149201 7 3 0 23 16 18 68 53 5 87 chain 6417 chr21 48129895 + 23806604 23806690 LTR64 526 - 6 92 181889 6 0 3 8 3 0 69 chain 44180 chr21 48129895 + 23806696 23807250 MER41A 554 - 0 554 63971 554 chain 102031 chr21 48129895 + 23819678 23820904 L1PA7 6471 - 4 1231 36253 621 3 4 228 1 0 74 4 5 295 chain 39865 chr21 48129895 + 23830584 23831141 MLT2A2 560 + 0 560 69513 188 9 3 119 1 0 91 1 12 87 23 22 38 chain 513634 chr21 48129895 + 23865495 23871952 L1PA7 6471 + 3 6465 5819 267 2 1 86 0 1 51 30 5 556 5 13 561 0 4 140 4 1 124 0 7 130 0 1 156 2 0 30 1 0 54 0 2 108 2 6 201 0 1 122 1 3 198 0 4 488 8 7 172 1 0 25 0 1 120 2 1 352 0 1 61 8 1 304 0 1 5 1 0 143 1 3 50 1 0 7 0 1 196 0 3 845 5 6 80 14 20 408 0 2 320 3 0 6 chain 169923 chr21 48129895 + 23900195 23902136 L1PA5 6144 - 3 1953 22058 330 0 1 33 0 1 389 4 5 231 0 5 181 0 1 773 chain 10466 chr21 48129895 + 23902136 23902252 L1PA5 6144 + 4085 4201 158020 116 chain 5289 chr21 48129895 + 23917936 23918016 LOR1b 457 + 0 88 192127 31 1 10 27 1 0 20 chain 12820 chr21 48129895 + 23964665 23964987 L1PB1 5432 - 11 309 148974 17 1 0 13 1 0 6 2 1 14 1 0 24 79 69 41 1 0 15 2 1 50 18 12 11 1 0 9 1 0 15 chain 37188 chr21 48129895 + 23965684 23966186 L1PB1 5432 + 4176 4678 73250 52 0 1 148 3 4 177 5 6 64 3 0 50 chain 4772 chr21 48129895 + 23970767 23971286 LTR12C 1709 + 795 1434 197668 42 442 562 35 chain 8319 chr21 48129895 + 23971338 23971462 LTR12D 1347 + 1224 1347 169286 58 17 16 49 chain 66423 chr21 48129895 + 23979017 23979997 MER4-int 2692 - 981 2038 49904 23 0 36 67 1 5 111 7 8 55 8 29 4 0 1 5 1 0 176 15 13 5 2 0 23 1 0 45 1 0 55 0 2 57 13 12 150 13 15 48 0 4 43 13 14 30 0 13 8 chain 30402 chr21 48129895 + 23983002 23983456 MER4A1 472 - 0 472 83679 68 6 8 42 14 17 45 0 5 11 3 2 54 21 29 153 0 1 37 chain 6304 chr21 48129895 + 23988358 23988440 L1PA6 6164 - 3 83 182759 13 2 0 67 chain 42096 chr21 48129895 + 24030786 24031268 L1PA4 6152 - 9 491 66501 330 0 1 129 1 0 22 chain 30299 chr21 48129895 + 24031268 24031599 L1PA4 6152 + 5335 5666 83913 331 chain 4579 chr21 48129895 + 24054149 24054203 HERVL-int 5654 + 19 73 199890 54 chain 36633 chr21 48129895 + 24058992 24059394 L1PA3long 6157 - 1058 1461 73921 318 0 1 84 chain 95100 chr21 48129895 + 24059394 24060437 L1PA3long 6157 + 5103 6146 38065 1043 chain 228651 chr21 48129895 + 24065224 24068389 L1PA10 4194 - 40 3224 17379 38 4 1 8 1 2 53 18 19 207 18 6 708 1 0 4 0 1 455 6 4 12 6 8 151 2 0 35 0 1 38 14 34 29 5 7 59 0 7 19 6 7 48 3 6 190 2 0 28 0 1 86 23 27 82 6 5 136 6 7 32 2 1 131 9 8 167 0 7 9 17 10 175 1 0 115 chain 8041 chr21 48129895 + 24104787 24104880 AluSz 310 + 31 124 170807 93 chain 14563 chr21 48129895 + 24123508 24123691 L1PA5 6144 + 5958 6141 142695 35 4 5 34 1 0 109 chain 35660 chr21 48129895 + 24124744 24125150 L1HS 6032 + 5515 6032 75321 14 13 124 379 chain 28754 chr21 48129895 + 24143866 24144175 AluYb8 318 - 12 318 90097 180 3 0 126 chain 3671 chr21 48129895 + 24149046 24149091 MER67C 710 + 663 708 212378 45 chain 65032 chr21 48129895 + 24153646 24154382 L1PA5 6144 - 5 740 50559 108 1 0 627 chain 15060 chr21 48129895 + 24161888 24162098 L1PB2 3958 + 3630 3838 141138 51 2 1 24 0 1 48 2 0 83 chain 27527 chr21 48129895 + 24171448 24171747 AluYa5 310 - 4 303 94584 299 chain 108629 chr21 48129895 + 24190465 24191723 LTR12C 1709 - 0 1707 34531 73 1 0 94 0 102 210 2 6 65 0 47 129 0 278 331 0 19 353 chain 10490 chr21 48129895 + 24218316 24218455 MER61-int 3695 - 2793 2932 158291 47 2 0 84 0 2 6 chain 68575 chr21 48129895 + 24232856 24233634 L1PA5 6144 + 5368 6144 49000 767 2 0 9 chain 27207 chr21 48129895 + 24241540 24241966 L1MA2 4263 - 158 578 95570 39 14 8 11 0 1 50 1 0 4 0 1 24 2 1 8 1 0 122 0 3 27 21 19 102 chain 44421 chr21 48129895 + 24242263 24242782 HERVL-int 5654 - 1681 2197 63673 29 2 0 19 1 0 468 chain 16457 chr21 48129895 + 24250768 24251121 THE1D 372 - 1 372 137046 99 0 1 32 56 73 47 44 45 16 11 8 33 0 2 15 chain 39729 chr21 48129895 + 24255762 24256208 L1PA4 6152 - 0 446 69714 446 chain 7072 chr21 48129895 + 24259741 24260053 MER34C2 569 - 12 322 176936 34 1 0 5 0 5 34 169 160 24 23 26 22 chain 9779 chr21 48129895 + 24262922 24263191 MER61D 487 - 111 374 161705 5 3 0 16 1 0 13 123 121 108 chain 129184 chr21 48129895 + 24266939 24268410 L1PA5 6144 - 16 1491 28271 411 0 2 184 0 1 236 1 0 323 0 2 316 chain 4286 chr21 48129895 + 24270539 24270716 MER44B 551 - 302 483 203401 18 81 82 25 1 2 12 9 11 31 chain 22417 chr21 48129895 + 24277476 24277737 L1PA7 6471 + 6208 6469 118394 261 chain 63940 chr21 48129895 + 24281387 24282095 L1PA3long 6157 + 5449 6157 51035 708 chain 365071 chr21 48129895 + 24291961 24296172 L1PA5 6144 + 1929 6144 11228 381 16 10 99 0 1 26 2 0 330 1 0 166 0 1 1389 5 13 350 1 2 1305 0 2 140 chain 26526 chr21 48129895 + 24299055 24299364 L1PA5 6144 - 12 321 97948 309 chain 25378 chr21 48129895 + 24300851 24301141 AluY 311 + 16 307 102792 116 0 1 174 chain 5126 chr21 48129895 + 24304086 24304181 L1PA17 2846 - 153 246 193821 35 17 16 10 1 0 32 chain 227275 chr21 48129895 + 24328344 24330834 L1PA3long 6157 + 3667 6157 17469 2490 chain 44157 chr21 48129895 + 24347196 24347690 L1PA4 6152 - 1 495 64001 494 chain 111279 chr21 48129895 + 24357636 24359270 L1PB1 5432 + 3804 5413 33869 27 0 1 338 1 0 209 7 8 163 0 1 81 6 2 205 7 15 190 9 9 50 1 2 9 4 3 21 2 1 7 1 0 9 8 4 8 2 0 53 22 20 39 45 32 16 3 1 4 1 0 14 2 0 24 1 0 21 1 0 13 1 0 9 chain 82095 chr21 48129895 + 24377397 24378573 L1PA8 5853 + 4657 5853 42726 53 11 16 280 9 5 86 3 0 5 8 11 61 10 36 354 1 0 44 2 0 72 1 0 4 8 7 38 13 12 19 5 4 89 chain 21539 chr21 48129895 + 24392569 24392838 AluYc3 301 + 0 275 122005 119 0 2 128 6 10 16 chain 3830 chr21 48129895 + 24393743 24393787 LTR12D 1347 - 654 698 209945 44 chain 9952 chr21 48129895 + 24399595 24399717 MER85 139 - 0 132 160824 40 0 10 82 chain 24504 chr21 48129895 + 24441165 24441465 AluSc 308 + 8 308 107522 300 chain 39196 chr21 48129895 + 24467769 24468210 L1PA4 6152 - 1 443 70460 338 0 1 103 chain 42047 chr21 48129895 + 24469779 24470349 MER61F 604 - 30 604 66561 42 1 0 145 28 32 143 0 1 211 chain 81409 chr21 48129895 + 24507342 24508386 MER11B 1079 - 5 1079 43008 24 9 8 124 7 6 137 6 9 122 0 6 310 0 17 5 0 1 80 0 5 220 chain 74094 chr21 48129895 + 24518990 24519821 L1PA3long 6157 - 2 830 46465 352 5 2 474 chain 90958 chr21 48129895 + 24539897 24541038 L1PA7 6471 - 1205 2364 39205 244 3 4 32 8 1 160 2 1 12 0 3 26 0 9 102 0 4 72 1 0 110 0 9 348 0 1 21 chain 96592 chr21 48129895 + 24541038 24542238 L1PA7 6471 + 5273 6469 37671 348 1 0 82 1 0 604 13 13 139 2 0 10 chain 93097 chr21 48129895 + 24580218 24581373 L1PA7 6471 + 5300 6464 38632 8 4 0 273 0 10 30 1 0 77 0 2 431 0 1 89 0 1 242 chain 21474 chr21 48129895 + 24606074 24606310 L1PA5 6144 + 5877 6113 122237 236 chain 3095 chr21 48129895 + 24631878 24631914 Tigger2a 444 - 131 167 223023 36 chain 35967 chr21 48129895 + 24653682 24654177 L1PA8 5853 + 5350 5839 74933 214 1 0 44 6 4 66 2 1 9 7 0 6 1 7 39 2 1 98 chain 4283 chr21 48129895 + 24654177 24654226 U2 167 - 117 166 203436 49 chain 22136 chr21 48129895 + 24674505 24674751 AluYa5 310 - 3 241 119643 145 8 0 93 chain 42897 chr21 48129895 + 24690201 24690933 LTR1 825 - 7 813 65543 6 1 0 66 14 15 113 4 5 193 1 14 14 98 104 30 4 48 91 17 15 26 0 12 54 chain 12779 chr21 48129895 + 24699111 24699262 L1PA2 6032 + 5883 6032 149139 138 2 0 11 chain 21027 chr21 48129895 + 24710487 24710779 AluY 311 + 25 307 123821 98 8 3 175 5 0 6 chain 7889 chr21 48129895 + 24728137 24728256 LTR39 781 - 619 739 171736 15 9 10 95 chain 47653 chr21 48129895 + 24730451 24731055 LTR10C 591 - 5 591 60735 65 33 13 177 0 1 247 0 1 82 chain 21424 chr21 48129895 + 24774113 24774368 AluY 311 + 31 284 122424 92 3 1 160 chain 3531 chr21 48129895 + 24822620 24822660 MLT2A2 560 + 520 560 214870 40 chain 3555 chr21 48129895 + 24825838 24825880 LOR1-int 1871 - 817 859 214468 42 chain 7231 chr21 48129895 + 24847202 24847310 MER57C2 434 + 0 120 175886 40 4 17 29 1 0 34 chain 9693 chr21 48129895 + 24862801 24862945 MSTA 426 + 28 200 162118 28 0 3 41 19 44 56 chain 22907 chr21 48129895 + 24862945 24863223 AluY 311 + 27 306 116076 56 0 1 222 chain 15630 chr21 48129895 + 24873338 24873530 MSTA-int 1630 + 22 214 139494 192 chain 13837 chr21 48129895 + 24874139 24874457 L1PB1 5432 - 24 324 145106 4 1 0 13 1 0 14 8 7 24 2 0 15 1 0 4 2 0 14 8 0 7 16 14 7 1 0 4 1 0 34 0 10 16 2 1 52 2 0 9 5 1 14 1 0 10 1 0 20 0 1 5 chain 45918 chr21 48129895 + 24900541 24901084 L1PA5 6144 + 5600 6144 62115 259 0 1 284 chain 4906 chr21 48129895 + 24917069 24917126 MER57F 435 - 371 428 196220 57 chain 3063 chr21 48129895 + 24937960 24937997 L1MC3 1789 - 640 677 223756 37 chain 23662 chr21 48129895 + 25045746 25046042 AluY 311 + 14 311 112236 108 3 6 107 2 0 76 chain 7207 chr21 48129895 + 25047670 25047787 L1PB4 2604 - 130 243 176020 61 3 1 23 5 3 25 chain 23008 chr21 48129895 + 25128928 25129174 L1PA3long 6157 - 0 247 115591 147 0 1 99 chain 47250 chr21 48129895 + 25131215 25131763 L1PA2 6032 - 91 639 61000 548 chain 9969 chr21 48129895 + 25132755 25133076 L1MC1 2226 + 1740 2039 160731 35 32 33 18 85 68 22 1 0 50 26 23 5 2 0 45 chain 10041 chr21 48129895 + 25134951 25135065 L1PA4 6152 - 9 123 160375 114 chain 26661 chr21 48129895 + 25136472 25136784 L1PA5 6144 + 5830 6141 97450 27 1 0 284 chain 16853 chr21 48129895 + 25167272 25167480 L1PA6 6164 - 5 215 135965 147 0 2 61 chain 119800 chr21 48129895 + 25179151 25180631 LTR12C 1709 + 0 1709 31119 300 6 7 51 0 1 291 0 119 68 1 0 123 0 28 16 35 114 106 1 5 211 8 6 263 chain 2621 chr21 48129895 + 25180007 25180039 LTR12C 1709 + 1133 1165 128234 32 chain 6883 chr21 48129895 + 25228177 25228252 L1PA3long 6157 + 6082 6157 178331 75 chain 54157 chr21 48129895 + 25229146 25229860 LTR12_ 688 + 0 688 56256 25 1 0 5 0 1 57 25 0 384 1 0 216 chain 10122 chr21 48129895 + 25256773 25256895 MER4A1 472 - 350 472 159986 122 chain 4131 chr21 48129895 + 25263982 25264032 MLT2A1 477 + 428 477 205488 29 1 0 20 chain 58378 chr21 48129895 + 25278688 25279355 L1PA4 6152 - 1 669 53761 7 0 1 660 chain 28823 chr21 48129895 + 25286452 25286754 AluYg6 310 - 8 310 89793 302 chain 59218 chr21 48129895 + 25300501 25301194 L1PA7 6471 + 5776 6469 53273 693 chain 22722 chr21 48129895 + 25351353 25351635 AluY 311 + 0 277 116971 123 6 0 9 3 4 141 chain 47223 chr21 48129895 + 25358973 25359988 THE1B-int 1605 + 18 1600 61027 10 4 5 122 2 5 111 0 2 157 44 21 21 351 935 193 chain 4408 chr21 48129895 + 25359720 25359775 THE1-int 844 - 18 72 201846 20 1 0 34 chain 33647 chr21 48129895 + 25385588 25386085 MLT2A2 560 + 0 506 78176 193 34 40 64 18 8 97 0 11 62 0 2 29 chain 10768 chr21 48129895 + 25386234 25386472 MLT2B2 565 + 190 529 157119 31 2 0 15 24 25 40 49 151 77 chain 24655 chr21 48129895 + 25424310 25424603 L1PA6 6164 - 92 385 106694 293 chain 74080 chr21 48129895 + 25439193 25440185 L1PA8A 6298 - 6 1005 46470 163 5 6 39 0 2 349 1 4 52 4 0 109 7 8 55 0 1 12 1 3 14 5 1 133 0 5 43 chain 28293 chr21 48129895 + 25512283 25512687 L1PA16 3655 + 2674 3080 91971 13 10 11 205 15 14 61 4 6 96 chain 4053 chr21 48129895 + 25527537 25527626 L1MD 993 + 721 810 206589 35 27 27 27 chain 7053 chr21 48129895 + 25539497 25539640 L1PA15 4387 - 1341 1486 177082 30 45 47 68 chain 11871 chr21 48129895 + 25551971 25552098 L1PA5 6144 - 881 1008 151951 127 chain 76100 chr21 48129895 + 25552098 25552968 L1PA5 6144 + 5270 6143 45421 197 1 3 564 0 1 108 chain 22120 chr21 48129895 + 25553576 25553884 L1PA7 6471 - 2 291 119703 14 0 3 124 14 7 11 15 0 130 chain 19616 chr21 48129895 + 25553897 25554130 L1PA7 6471 + 5931 6164 128343 233 chain 17150 chr21 48129895 + 25563169 25563378 L1PA8A 6298 - 8 231 135166 100 0 14 109 chain 26337 chr21 48129895 + 25563378 25563710 L1PA8A 6298 + 5543 5875 98666 332 chain 4415 chr21 48129895 + 25576265 25576320 MLT2B1 522 + 467 522 201741 55 chain 5660 chr21 48129895 + 25580704 25580857 LTR12C 1709 - 656 890 188483 51 37 0 24 23 141 18 chain 49519 chr21 48129895 + 25585075 25585705 L1PA7 6471 + 5844 6468 59374 292 8 4 323 2 0 5 chain 3541 chr21 48129895 + 25598913 25598971 L1MA9 1812 - 339 398 214684 16 5 7 29 1 0 7 chain 91614 chr21 48129895 + 25628625 25629827 L1PA7 6471 + 5280 6467 39089 227 5 8 99 0 2 45 0 1 128 7 11 241 0 2 285 0 1 84 0 4 20 36 4 25 chain 34092 chr21 48129895 + 25659663 25660047 L1P1 4361 - 351 734 77484 334 1 0 49 chain 14327 chr21 48129895 + 25669304 25669479 L1PA7 6471 - 8 179 143470 5 3 0 141 1 0 25 chain 102098 chr21 48129895 + 25700273 25701433 L1PA5 6144 - 2 1173 36238 144 0 2 6 5 9 337 0 1 259 0 2 41 0 2 368 chain 62692 chr21 48129895 + 25707844 25708563 L1PA4 6152 - 14 735 51597 229 12 13 354 0 1 124 chain 23369 chr21 48129895 + 25751435 25751730 AluSp 311 + 12 300 113818 79 0 3 34 3 0 119 7 0 53 chain 66745 chr21 48129895 + 25751997 25752891 L1PA8 5853 - 3 880 49757 89 0 7 6 17 4 40 19 17 7 1 0 72 2 0 46 1 0 553 10 5 31 chain 30345 chr21 48129895 + 25764212 25764529 AluYb8 318 - 1 318 83789 317 chain 25611 chr21 48129895 + 25774046 25774353 AluY 311 + 0 303 101668 131 4 0 172 chain 43498 chr21 48129895 + 25782895 25783400 MER9a1 513 - 8 513 64816 505 chain 42766 chr21 48129895 + 25788428 25788957 MER41A 554 + 13 554 65698 235 0 10 88 0 1 21 0 1 185 chain 3647 chr21 48129895 + 25792519 25792564 MER41A 554 + 280 325 212851 45 chain 12040 chr21 48129895 + 25792568 25792721 MER41A 554 + 332 489 152031 34 1 0 102 0 5 16 chain 25966 chr21 48129895 + 25819616 25819966 THE1D-int 1627 - 5 360 100153 27 0 1 44 0 2 35 1 0 77 17 20 149 chain 25193 chr21 48129895 + 25838000 25838414 THE1C-int 1605 + 15 512 103782 70 34 90 229 24 52 52 1 0 4 chain 182615 chr21 48129895 + 25847873 25849970 L1PA6 6164 + 4060 6162 20726 121 0 1 96 0 1 91 0 4 1135 1 0 653 chain 133354 chr21 48129895 + 25860683 25862323 L1PA7 6471 + 4833 6466 27356 446 15 5 64 0 1 272 1 0 352 0 1 162 0 1 314 0 1 14 chain 24677 chr21 48129895 + 25879345 25879727 L1PA13 3608 - 140 511 106572 20 9 5 47 2 0 57 6 5 61 2 0 108 7 6 27 1 0 23 1 0 4 0 1 7 chain 12263 chr21 48129895 + 25882293 25882516 MER30 238 + 0 238 151140 19 28 27 52 26 45 56 3 0 39 chain 132916 chr21 48129895 + 25906691 25908196 L1PA4 6152 - 1 1511 27440 782 1 2 59 0 4 663 chain 3833 chr21 48129895 + 25917898 25917944 MADE1 96 + 50 96 209878 46 chain 501318 chr21 48129895 + 25926907 25933270 L1PA7 6471 + 1 6465 6766 402 0 1 54 0 1 95 4 58 627 9 12 119 0 14 434 0 1 191 17 18 114 1 0 449 0 3 38 0 3 50 0 1 132 5 6 73 7 8 4 1 0 187 1 5 395 15 13 403 0 1 465 1 0 5 0 1 184 1 6 4 0 1 440 0 1 47 10 8 514 1 2 33 1 4 262 0 4 79 0 1 165 0 1 175 0 1 7 1 0 114 0 1 27 chain 9303 chr21 48129895 + 25958099 25958215 MSTB 430 - 283 400 164046 24 0 1 92 chain 12508 chr21 48129895 + 25984530 25984689 THE1B 368 - 55 215 150217 66 0 2 68 0 1 4 2 0 19 chain 3222 chr21 48129895 + 25999870 25999909 MLT1D-int 1367 + 106 145 220550 39 chain 36508 chr21 48129895 + 26011237 26011707 LTR2B 499 + 9 499 74230 6 0 1 88 6 25 179 0 1 8 1 0 182 chain 13320 chr21 48129895 + 26042310 26042470 THE1C 375 - 195 355 147011 160 chain 64648 chr21 48129895 + 26050108 26050842 L1PA4 6152 + 5417 6152 50725 422 1 0 4 0 1 48 0 1 102 1 0 6 0 1 150 chain 5129 chr21 48129895 + 26054599 26054695 L1PB1 5432 - 10 101 193790 12 7 6 13 1 0 21 1 0 24 2 0 15 chain 104458 chr21 48129895 + 26071103 26072366 L1PA7 6471 - 10 1276 35623 547 0 1 209 1 4 79 1 0 426 chain 31026 chr21 48129895 + 26072366 26072825 L1P2 5180 + 2090 2575 82470 67 6 21 89 12 33 24 20 9 219 4 5 18 chain 5619 chr21 48129895 + 26103890 26103970 MLT2B4 540 + 58 139 188880 58 5 6 17 chain 55416 chr21 48129895 + 26108257 26108881 L1PA4 6152 - 578 1201 55456 117 2 1 505 chain 50997 chr21 48129895 + 26108881 26109460 L1PA4 6152 + 5577 6152 58311 321 1 0 104 1 0 145 2 0 5 chain 25679 chr21 48129895 + 26111851 26112145 L1PA5 6144 + 5844 6139 101372 108 1 2 185 chain 67760 chr21 48129895 + 26146990 26147750 L1PA5 6144 - 1 760 49342 258 1 0 501 chain 22743 chr21 48129895 + 26175897 26176183 AluSp 311 + 11 291 116854 109 6 0 171 chain 7875 chr21 48129895 + 26190324 26190410 L1PA7 6471 + 6218 6304 171838 86 chain 12169 chr21 48129895 + 26190416 26190561 L1PA7 6471 + 6309 6454 151541 145 chain 3283 chr21 48129895 + 26212402 26212540 LTR12D 1347 - 595 750 219314 36 34 92 14 42 0 4 0 1 8 chain 109296 chr21 48129895 + 26218085 26220954 L1PB1 5432 - 12 1927 34371 16 1 0 12 1 0 22 2 1 23 2 0 14 34 21 11 2 0 4 1 0 16 1 0 44 2 1 16 2 1 18 0 8 24 2 0 8 8 4 12 1 0 10 1 0 20 1172 228 235 0 1 29 0 3 70 1 0 225 10 26 27 0 3 99 10 14 161 1 2 44 1 2 173 2 0 35 24 13 173 15 14 32 chain 47446 chr21 48129895 + 26223998 26224518 L1PA3long 6157 + 5636 6157 60871 378 0 1 142 chain 7711 chr21 48129895 + 26248031 26248218 L1MA3 4352 - 45 247 172856 19 1 0 6 1 0 24 17 16 30 38 56 37 0 1 5 1 0 8 chain 20317 chr21 48129895 + 26255877 26256244 THE1D 372 + 0 360 126185 15 0 2 15 2 0 24 9 0 9 13 14 56 51 50 6 0 2 167 chain 40634 chr21 48129895 + 26265664 26266154 L1PA7 6471 - 2 494 68391 145 0 1 30 0 1 315 chain 29998 chr21 48129895 + 26280585 26280918 L1PA2 6032 + 5700 6032 84818 317 1 0 15 chain 18740 chr21 48129895 + 26281333 26281565 AluSc5 308 + 64 294 130856 67 2 0 163 chain 427484 chr21 48129895 + 26286918 26292553 L1PA7 6471 - 1 5378 9360 181 13 13 108 2 3 239 1 0 118 7 10 98 0 2 59 1 0 6 0 1 264 5 0 70 6 0 8 6 13 217 0 5 106 6 4 743 0 1 199 3 1 377 0 1 93 2 1 26 5 0 16 12 11 148 13 30 163 1 4 499 5 1 48 1 3 409 300 0 638 0 2 37 0 1 73 12 24 30 1 0 68 12 21 33 0 4 147 chain 3280 chr21 48129895 + 26309888 26309924 MLT2B1 522 - 3 39 219369 36 chain 5017 chr21 48129895 + 26319158 26319235 MADE1 96 + 0 96 194952 21 6 24 44 0 1 6 chain 10311 chr21 48129895 + 26334520 26334704 MSTA 426 - 223 400 159079 15 33 25 53 6 7 77 chain 8875 chr21 48129895 + 26338803 26338902 L1PA4 6152 - 5 104 166259 99 chain 43719 chr21 48129895 + 26368584 26369097 L1PA6 6164 - 11 529 64545 148 1 2 82 0 5 246 1 0 35 chain 8444 chr21 48129895 + 26386353 26386739 MER65A 464 + 64 464 168602 24 24 24 39 1 4 22 221 232 55 chain 14166 chr21 48129895 + 26388590 26388768 AluY 311 + 83 261 143993 35 1 0 14 0 1 128 chain 120335 chr21 48129895 + 26406560 26407892 L1PA3long 6157 - 0 1325 30926 433 7 0 892 chain 24231 chr21 48129895 + 26424235 26424532 AluY 311 + 8 308 109036 27 0 5 263 2 0 5 chain 23242 chr21 48129895 + 26456668 26456947 AluSg7 307 - 17 295 114483 161 1 0 117 chain 24876 chr21 48129895 + 26467732 26468081 THE1B 368 + 0 368 105481 169 1 0 23 31 51 125 chain 5442 chr21 48129895 + 26475716 26475792 MLT1A0 366 + 30 107 190590 17 1 2 58 chain 14513 chr21 48129895 + 26484956 26485298 L1PB1 5432 - 10 318 142844 18 1 0 12 11 10 12 1 0 16 0 3 5 2 0 14 1 0 5 3 1 18 24 12 15 1 0 42 21 19 52 2 0 9 5 1 6 6 0 8 1 0 6 1 0 24 chain 43156 chr21 48129895 + 26504344 26505084 L1PB1 5432 + 4705 5416 65221 76 0 1 299 21 22 11 5 0 20 1 0 4 24 21 9 2 0 51 1 0 17 1 0 44 1 0 12 36 23 12 24 19 16 13 12 16 0 3 11 1 0 12 chain 6265 chr21 48129895 + 26518194 26518274 L1MA2 4263 - 4021 4101 183043 80 chain 29503 chr21 48129895 + 26526077 26526430 THE1B-int 1605 + 13 369 86628 348 0 3 5 chain 3016 chr21 48129895 + 26530178 26530211 tRNA-Lys-AAG 49 - 11 44 224719 33 chain 23411 chr21 48129895 + 26538076 26538428 THE1B 368 - 0 368 113593 39 1 2 34 1 0 182 3 4 17 31 46 44 chain 8599 chr21 48129895 + 26588568 26588669 L1PA6 6164 + 6061 6162 167735 101 chain 30289 chr21 48129895 + 26666405 26666781 THE1C 375 + 0 375 83964 350 1 0 25 chain 23355 chr21 48129895 + 26707251 26707955 MSTA 426 - 11 426 113899 94 51 59 16 2 0 29 328 23 108 0 10 76 chain 115319 chr21 48129895 + 26717433 26718863 L1P3 4156 - 100 1542 32675 362 10 14 160 2 1 87 1 0 11 0 1 117 1 0 172 0 1 35 7 12 339 0 3 111 1 2 14 chain 46772 chr21 48129895 + 26719041 26719619 L1P2 5180 - 2885 3464 61396 360 0 1 218 chain 131926 chr21 48129895 + 26719621 26721193 L1PA7 6471 + 4882 6463 27648 591 0 5 143 2 0 618 9 13 56 7 8 142 0 1 4 chain 15888 chr21 48129895 + 26732562 26732780 L1PA8 5853 + 5637 5849 138688 45 1 0 11 1 0 6 3 1 40 2 1 19 1 0 89 chain 34826 chr21 48129895 + 26750396 26751019 L1PA14 3548 + 2898 3485 76440 40 23 15 47 2 0 5 1 0 101 17 13 12 2 0 6 1 0 13 1 0 71 4 3 57 0 1 47 2 1 13 5 1 19 18 16 14 1 0 3 1 0 19 2 1 39 6 0 10 1 0 20 chain 4420 chr21 48129895 + 26766799 26766868 L1MA5A 2387 + 2240 2306 201692 19 3 1 36 1 0 10 chain 18624 chr21 48129895 + 26785583 26785809 L1PA7 6471 + 6242 6468 131154 226 chain 4195 chr21 48129895 + 26794448 26794526 L1MA8 2339 - 107 179 204614 37 17 11 24 chain 15016 chr21 48129895 + 26798258 26798595 L1PB1 5432 - 10 318 141275 12 7 6 12 1 0 22 3 2 22 2 0 14 1 0 5 3 1 17 17 8 5 2 0 15 1 0 44 18 17 52 2 0 8 8 4 10 1 0 13 1 0 19 chain 468906 chr21 48129895 + 26806207 26811938 L1PA7 6471 + 741 6464 8076 412 0 1 93 1 7 10 23 18 685 8 9 8 1 0 345 2 3 198 0 1 104 23 7 942 0 1 189 0 1 61 1 0 142 4 3 28 1 0 260 0 1 147 0 2 171 7 3 78 0 4 43 0 2 376 0 1 512 7 5 96 0 1 753 chain 4982 chr21 48129895 + 26821069 26821134 MLT2C2 476 + 137 202 195341 65 chain 5162 chr21 48129895 + 26824726 26824897 MER33 330 - 157 330 193428 39 95 97 37 chain 23176 chr21 48129895 + 26825146 26825390 L1HS 6032 + 5788 6032 114780 244 chain 29720 chr21 48129895 + 26841769 26842128 L1PA7 6471 - 7 363 85759 5 3 0 351 chain 8692 chr21 48129895 + 26855352 26855474 THE1B 368 - 34 154 167241 91 5 4 7 1 0 18 chain 8187 chr21 48129895 + 26865510 26865597 L1PA16 3655 + 2998 3085 170036 87 chain 23517 chr21 48129895 + 26875940 26876295 THE1D 372 + 0 355 113034 131 31 33 11 1 0 18 1 0 147 1 0 4 0 1 10 chain 90522 chr21 48129895 + 26902844 26904895 L1PA7 6471 - 1 1090 39467 155 1 0 342 0 1 128 1 2 142 0 2 32 10 0 49 0 3 100 958 0 133 chain 77697 chr21 48129895 + 26903809 26904762 LTR13A 966 - 0 966 44658 41 4 13 58 0 1 42 0 1 149 2 0 356 1 2 194 1 3 37 0 1 68 chain 22258 chr21 48129895 + 26915736 26916144 MSTB 430 - 9 430 119083 33 74 81 16 1 0 47 1 0 10 2 22 10 11 1 43 2 0 158 chain 27040 chr21 48129895 + 26968412 26968709 AluYk4 311 - 14 311 96145 297 chain 110283 chr21 48129895 + 26984465 26985801 L1PA6 6164 - 16 1372 34133 137 2 0 5 2 4 78 0 2 602 0 8 78 6 7 277 0 8 103 0 1 46 chain 25784 chr21 48129895 + 26986448 26986766 AluY 311 + 0 311 100938 17 2 1 115 6 1 40 1 0 137 chain 28446 chr21 48129895 + 27053567 27053915 THE1C 375 - 11 375 91390 14 1 0 165 1 0 68 0 18 99 chain 124836 chr21 48129895 + 27067287 27068744 SVA_C 1631 - 0 1610 29443 17 4 0 381 0 3 131 0 3 5 3 0 118 4 138 29 5 0 197 0 40 509 19 5 13 6 5 16 chain 23918 chr21 48129895 + 27104994 27105325 AluSp 311 + 0 311 110821 37 19 0 39 8 9 111 0 1 54 3 0 60 chain 9437 chr21 48129895 + 27151905 27152012 HERV9-int 5642 + 0 107 163377 107 chain 23726 chr21 48129895 + 27153147 27153447 AluY 311 + 0 305 111901 18 0 5 14 0 1 78 3 1 9 0 1 178 chain 9345 chr21 48129895 + 27159959 27160074 MLT1A0 366 - 45 160 163834 115 chain 38170 chr21 48129895 + 27182598 27183110 MER41A 554 - 1 518 71886 96 0 1 34 0 1 4 7 9 4 1 0 30 5 6 109 3 4 219 chain 123268 chr21 48129895 + 27220135 27221740 THE1D-int 1627 + 0 1619 29954 38 1 0 150 2 0 149 0 4 84 4 0 123 12 6 22 6 29 763 1 0 6 0 1 244 chain 3899 chr21 48129895 + 27234333 27234376 L1PA3long 6157 - 5 48 208876 43 chain 26683 chr21 48129895 + 27240899 27241234 MER1A 529 - 100 435 97374 335 chain 37929 chr21 48129895 + 27250666 27251217 MER41A 554 + 0 554 72237 373 0 1 22 8 8 14 48 50 86 chain 4782 chr21 48129895 + 27263228 27263284 Tigger1 2417 - 72 128 197557 56 chain 5327 chr21 48129895 + 27290072 27290670 L1PA8 5853 + 4935 5524 51678 71 8 3 78 8 0 164 0 4 269 chain 554626 chr21 48129895 + 27290685 27296704 L1PA2 6032 + 6 6032 870 668 0 1 20 0 1 45 0 1 230 0 1 2090 1 0 74 0 4 269 0 1 156 1 0 136 1 0 644 1 0 1473 1 0 124 0 2 43 0 1 42 chain 2966 chr21 48129895 + 27296755 27297088 L1PA8 5853 + 5524 5852 51678 39 2 1 44 1 0 71 1 0 9 2 1 71 1 0 92 chain 8056 chr21 48129895 + 27324569 27324660 L1PA5 6144 - 6 97 170716 91 chain 48930 chr21 48129895 + 27332282 27332923 PABL_A 660 - 0 660 59792 71 0 1 84 0 1 80 0 1 203 0 1 33 7 24 71 7 5 85 chain 22918 chr21 48129895 + 27341386 27341689 AluY 311 + 16 311 116020 117 19 11 167 chain 8692 chr21 48129895 + 27363195 27363375 L1PB3 3668 + 3401 3562 167237 60 0 1 16 51 33 17 3 1 33 chain 37288 chr21 48129895 + 27376974 27377405 L1PA6 6164 - 4 435 73100 79 0 1 77 2 1 273 chain 24812 chr21 48129895 + 27405439 27405794 THE1C 375 + 0 355 105829 106 8 9 69 15 14 157 chain 13908 chr21 48129895 + 27409366 27409630 L1MA5A 2387 + 2073 2306 144889 35 1 0 6 0 1 42 6 8 22 1 0 28 12 9 8 28 0 63 1 0 11 chain 23165 chr21 48129895 + 27418142 27418458 THE1B 368 - 0 313 114837 74 1 0 102 2 0 11 10 9 36 0 1 80 chain 6375 chr21 48129895 + 27420732 27420814 MER30 238 - 122 201 182204 9 3 0 70 chain 20794 chr21 48129895 + 27511942 27512200 AluSc 308 + 11 283 124623 15 0 1 175 0 13 68 chain 26844 chr21 48129895 + 27524314 27524625 AluY 311 + 2 305 96822 127 8 0 176 chain 23131 chr21 48129895 + 27545281 27545539 AluY 311 + 36 295 114990 96 0 1 162 chain 26809 chr21 48129895 + 27583738 27584084 L1PA6 6164 + 5811 6161 96943 144 0 3 46 16 17 140 chain 120191 chr21 48129895 + 27589772 27591316 THE1B-int 1605 + 18 1594 30989 95 0 3 11 0 1 133 4 3 166 1 26 559 0 1 5 1 0 111 13 17 445 chain 18460 chr21 48129895 + 27592461 27592820 THE1B 368 - 0 368 131617 56 18 17 52 22 34 17 23 15 37 28 34 106 chain 32926 chr21 48129895 + 27594675 27595102 MER4A1 472 - 0 456 79328 49 0 1 176 0 21 19 0 4 26 3 6 154 chain 30671 chr21 48129895 + 27600202 27600603 LTR7 482 - 5 481 83089 71 4 0 82 0 10 17 0 31 151 8 46 68 chain 284607 chr21 48129895 + 27601825 27605393 HERVH-int 3825 - 0 3824 14379 27 0 2 88 1 0 185 33 5 75 34 35 324 6 9 135 0 1 641 0 1 78 0 4 118 0 5 82 0 4 765 0 5 324 24 24 93 3 8 7 2 0 9 67 325 30 21 20 63 1 0 332 chain 26620 chr21 48129895 + 27605410 27605806 LTR7 482 - 8 482 97594 150 0 9 9 0 1 8 0 31 17 2 0 15 9 10 109 26 64 51 chain 9612 chr21 48129895 + 27615322 27615448 L1MB8 1703 - 600 727 162525 56 1 2 69 chain 19345 chr21 48129895 + 27621443 27621734 L1PA8 5853 - 0 287 129090 91 0 2 5 8 5 9 3 2 37 8 9 14 2 1 70 2 0 42 chain 22476 chr21 48129895 + 27631022 27631295 AluY 311 + 10 297 118128 108 0 1 84 0 13 81 chain 25476 chr21 48129895 + 27657393 27657697 AluYf5 307 + 0 305 102331 206 13 14 85 chain 7705 chr21 48129895 + 27674175 27674280 THE1B-int 1605 - 1453 1561 172904 29 7 10 69 chain 378633 chr21 48129895 + 27678808 27684546 L1PB1 5432 + 253 5411 10800 155 1 2 180 2 6 130 0 5 674 15 0 112 0 1 8 1 2 88 7 10 25 1 0 4 0 1 54 0 1 128 5 3 6 3 0 378 0 4 22 1 0 79 4 11 89 1 0 5 0 1 61 4 0 19 18 18 307 1 0 253 1 0 62 1 7 253 0 1 68 4 1 234 28 17 17 0 4 452 1 0 99 2 0 289 7 27 82 0 1 273 0 1 12 2 1 5 0 1 96 569 7 9 3 0 21 1 0 12 16 11 9 2 0 53 2 1 16 1 0 44 45 32 14 3 1 4 1 0 14 2 0 24 1 0 10 12 11 13 1 0 7 chain 24413 chr21 48129895 + 27687194 27687480 AluSp 311 - 25 311 108014 286 chain 33060 chr21 48129895 + 27689036 27689763 L1PA5 6144 - 0 443 79117 295 0 35 39 319 0 74 chain 3117 chr21 48129895 + 27694569 27694604 L1MA4 2864 - 63 98 222596 35 chain 94017 chr21 48129895 + 27700338 27701424 L1PA6 6164 - 2 1089 38347 9 0 1 1077 chain 5313 chr21 48129895 + 27725043 27725109 THE1D 372 + 213 279 191897 66 chain 3773 chr21 48129895 + 27725184 27725227 MLT1A 405 - 139 182 210765 43 chain 32638 chr21 48129895 + 27731762 27732140 L1PA3long 6157 + 5781 6152 79785 221 7 0 150 chain 110803 chr21 48129895 + 27745584 27746896 L1PA7 6471 - 2 1313 34002 161 0 1 728 2 0 421 chain 20771 chr21 48129895 + 27754621 27754991 THE1C 375 + 0 375 124712 27 0 1 56 40 41 26 36 36 65 0 1 97 1 3 22 chain 16370 chr21 48129895 + 27757566 27757760 L1PA3long 6157 + 5955 6157 137284 47 1 8 142 0 1 4 chain 21215 chr21 48129895 + 27764882 27765260 THE1D 372 - 0 372 123159 133 69 70 28 0 1 56 0 4 6 3 0 27 19 10 37 chain 19449 chr21 48129895 + 27772196 27772568 MSTA 426 + 0 414 128822 103 17 41 83 88 106 81 chain 23841 chr21 48129895 + 27773811 27774190 L1PA11 4918 - 383 738 111248 15 22 11 20 1 0 15 2 0 65 4 2 13 7 6 21 2 1 41 7 1 144 chain 19675 chr21 48129895 + 27779556 27779775 L1PA5 6144 + 5679 5898 128182 219 chain 50114 chr21 48129895 + 27812143 27812767 L1PA6 6164 - 2 636 58934 144 8 15 148 0 1 43 1 2 141 0 1 139 chain 8855 chr21 48129895 + 27812907 27813015 MER61E 571 - 0 109 166352 39 0 1 69 chain 59124 chr21 48129895 + 27831045 27831788 L1PA8 5853 - 0 793 53312 93 1 0 7 0 17 48 1 0 9 5 4 67 2 0 44 1 0 74 0 6 244 5 38 142 chain 7335 chr21 48129895 + 27841943 27842139 L1MA5A 2387 - 32 184 175195 15 1 0 10 42 30 4 1 0 66 27 0 13 3 0 14 chain 25682 chr21 48129895 + 27886100 27886393 L1PA4 6152 + 5859 6152 101366 7 1 0 172 0 1 113 chain 60901 chr21 48129895 + 27892460 27893162 L1PA8A 6298 - 18 720 52384 702 chain 34214 chr21 48129895 + 27902785 27903180 L1PA7 6471 - 3 398 77332 395 chain 13168 chr21 48129895 + 27986456 27986613 L1PA5 6144 + 5979 6137 147586 22 0 1 135 chain 2546 chr21 48129895 + 28002092 28002240 L1MA9 1812 - 119 232 232518 16 106 71 26 chain 92101 chr21 48129895 + 28010101 28011591 L1PB1 5432 - 11 1326 38938 28 2 1 22 1 0 24 2 0 14 9 6 13 33 22 10 4 3 41 2 1 15 2 1 12 1 0 40 2 0 9 9 5 10 3 2 4 1 0 24 51 11 90 104 1 113 0 1 5 0 1 264 3 0 171 1 0 351 chain 51800 chr21 48129895 + 28023419 28023988 L1PA2 6032 - 174 745 57754 287 0 2 282 chain 15037 chr21 48129895 + 28023988 28024149 L1PA2 6032 + 5869 6030 141212 161 chain 70918 chr21 48129895 + 28026631 28027437 L1PA5 6144 - 5 815 47952 326 0 3 75 0 1 405 chain 7225 chr21 48129895 + 28027437 28027520 L1PA5 6144 + 5270 5353 175914 83 chain 14718 chr21 48129895 + 28031584 28031798 MER61D 487 + 0 274 142207 145 31 91 38 chain 108558 chr21 48129895 + 28037311 28038795 L1PA10 4194 - 33 1537 34547 11 1 0 30 11 8 499 0 1 256 4 20 97 4 3 15 6 7 73 1 0 4 1 5 44 5 7 148 0 3 196 0 1 70 2 0 6 chain 16690 chr21 48129895 + 28042318 28042638 LOR1-int 1871 - 1417 1750 136437 60 1 0 24 1 0 16 0 26 42 1 0 22 2 0 7 0 2 42 5 0 10 14 11 22 1 0 4 24 23 22 chain 19030 chr21 48129895 + 28062841 28063193 THE1A 353 - 0 353 130035 49 96 98 96 1 0 110 chain 24096 chr21 48129895 + 28083968 28084447 L1PB1 5432 - 10 444 109759 18 1 0 12 1 0 22 1 0 24 2 0 12 13 10 16 16 6 6 2 0 16 1 0 35 25 23 54 2 0 7 9 5 12 1 0 4 1 0 25 3 0 9 14 3 115 chain 11193 chr21 48129895 + 28086867 28087165 MLT1C 463 + 6 309 155445 13 1 2 27 1 3 4 1 0 70 0 1 30 0 1 8 2 0 6 111 114 24 chain 24393 chr21 48129895 + 28097379 28097811 L1PB3 3668 - 54 453 108119 15 10 7 9 3 2 14 5 1 37 4 1 25 2 0 21 22 4 76 17 16 95 1 0 76 chain 42363 chr21 48129895 + 28103846 28104394 MLT2A2 560 - 8 560 66200 204 17 18 40 0 3 287 chain 31112 chr21 48129895 + 28106602 28107002 LTR7 482 - 12 482 82322 164 0 1 10 3 34 146 8 46 69 chain 45413 chr21 48129895 + 28117860 28118416 L1PA5 6144 - 0 556 62578 121 0 1 26 1 0 4 1 2 185 1 0 217 chain 11626 chr21 48129895 + 28134964 28135180 LTR8A 794 - 376 642 153790 105 17 39 53 28 56 13 chain 47912 chr21 48129895 + 28164686 28165225 L1PA4 6152 - 62 601 60549 539 chain 6514 chr21 48129895 + 28167439 28167532 L1PA17 2846 - 153 240 181132 14 4 0 31 1 0 16 1 0 26 chain 8004 chr21 48129895 + 28197342 28197444 MSTA 426 - 325 426 171024 48 1 0 53 chain 58239 chr21 48129895 + 28226755 28227504 LTR17 781 + 0 781 53840 251 7 8 67 0 1 85 2 0 110 0 1 21 7 21 21 1 2 126 0 22 27 10 4 14 chain 12821 chr21 48129895 + 28229240 28229419 HERV17-int 4347 + 19 193 148971 8 1 0 50 6 5 30 2 0 27 1 0 54 chain 312620 chr21 48129895 + 28229425 28233042 HERV17-int 4347 + 21 3650 12908 6 1 0 51 1 0 37 2 0 24 1 0 49 0 1 104 8 1 1174 0 1 1143 0 16 144 0 1 451 0 5 398 0 1 4 1 0 18 chain 62841 chr21 48129895 + 28233590 28234325 LTR17 781 + 0 781 51520 326 0 1 365 0 1 17 5 49 22 chain 4945 chr21 48129895 + 28239050 28239107 MER51A 677 + 199 256 195754 57 chain 4974 chr21 48129895 + 28245806 28245869 MSTB 430 - 1 65 195427 57 0 1 6 chain 20933 chr21 48129895 + 28247261 28247504 L1PA7 6471 - 1 244 124169 243 chain 42257 chr21 48129895 + 28263740 28264295 MLT2A2 560 + 0 560 66323 41 0 2 132 0 1 14 3 0 5 0 3 6 3 4 17 1 2 333 chain 6497 chr21 48129895 + 28264936 28265242 MER33 330 + 6 319 181274 51 192 192 4 1 0 42 2 10 14 chain 97923 chr21 48129895 + 28268604 28269695 L1PA3long 6157 - 0 1104 37299 11 1 0 51 0 10 777 0 4 251 chain 87377 chr21 48129895 + 28269695 28270689 L1P1 4361 + 2532 3526 40548 994 chain 74783 chr21 48129895 + 28397652 28398694 MER11C 1089 + 2 1063 46119 245 0 9 61 4 8 60 1 0 178 41 36 85 7 11 4 1 0 38 0 1 32 1 8 85 0 1 56 10 9 108 0 1 25 chain 30859 chr21 48129895 + 28424228 28424623 MLT2A1 477 + 2 398 82754 140 0 1 19 8 12 5 1 0 114 0 1 91 4 0 13 chain 430490 chr21 48129895 + 28425297 28430895 HERVL-int 5654 + 20 5654 9299 219 0 7 169 0 9 149 22 18 62 4 0 42 5 0 236 2 0 19 4 9 23 29 8 10 12 33 42 7 8 37 1 0 10 1 0 384 0 1 210 0 2 77 9 24 70 5 6 30 10 9 600 1 0 78 0 5 30 0 13 34 1 0 55 5 2 423 17 18 580 9 6 103 20 25 108 0 1 6 2 1 112 0 1 553 23 15 116 9 4 6 0 5 481 0 1 99 0 1 4 0 2 223 chain 35230 chr21 48129895 + 28442374 28442760 L1PA2 6032 + 5646 6032 75881 386 chain 29468 chr21 48129895 + 28449193 28449622 MLT2A1 477 + 3 477 86766 68 0 1 45 1 0 4 6 7 14 0 1 24 2 6 178 0 1 33 15 49 33 0 4 6 chain 3362 chr21 48129895 + 28459129 28459166 MADE1 96 - 59 96 217828 37 chain 10365 chr21 48129895 + 28510304 28510433 MER85 139 + 0 139 158850 89 0 10 40 chain 13683 chr21 48129895 + 28520389 28520558 THE1B 368 + 200 368 145659 40 1 0 128 chain 18286 chr21 48129895 + 28520841 28521142 THE1B 368 + 0 306 132113 108 5 6 54 40 46 16 1 0 10 1 0 66 chain 104890 chr21 48129895 + 28548005 28549159 L1PA4 6152 - 6 1160 35531 1154 chain 43103 chr21 48129895 + 28571969 28572514 L1PA8 5853 + 5315 5853 65285 58 0 1 188 1 0 47 2 0 69 13 10 52 2 1 19 1 0 93 chain 38493 chr21 48129895 + 28579545 28579988 L1PA7 6471 - 4 444 71446 10 3 0 430 chain 10307 chr21 48129895 + 28620437 28620595 Tigger2 2703 + 2285 2449 159107 53 7 9 19 1 4 5 3 0 34 0 4 36 chain 22906 chr21 48129895 + 28660511 28660863 THE1B 368 - 0 368 116086 128 1 0 10 1 0 12 0 4 14 7 10 21 1 0 97 25 39 18 2 0 15 chain 12537 chr21 48129895 + 28680786 28680932 L1PA4 6152 - 0 151 150088 6 0 5 140 chain 274677 chr21 48129895 + 28688992 28692464 HERVL-int 5654 - 2085 5654 14941 280 2 1 229 0 1 294 3 0 61 5 4 336 0 13 471 6 16 51 12 13 65 4 5 7 0 2 285 0 1 205 1 0 110 0 1 153 4 3 5 0 2 79 1 6 61 0 3 247 19 14 112 0 66 239 0 3 125 chain 31522 chr21 48129895 + 28692464 28692892 MLT2A1 477 - 0 477 81609 32 14 58 72 0 2 61 2 0 78 1 5 28 0 1 140 chain 9375 chr21 48129895 + 28758004 28758121 MER50 708 - 27 144 163685 117 chain 40742 chr21 48129895 + 28781830 28782377 MLT2A2 560 - 0 560 68258 126 8 9 11 5 16 337 1 2 59 chain 104336 chr21 48129895 + 28782377 28783845 HERVL-int 5654 - 0 3393 35660 122 26 27 61 15 4 8 0 7 14 1 4 175 7 8 19 1 0 115 7 9 46 0 1918 347 1 0 327 4 5 66 20 25 86 chain 436547 chr21 48129895 + 28804241 28809521 L1PA6 6164 - 8 5232 9149 157 0 6 244 45 0 210 10 21 832 6 4 7 0 2 456 0 1 263 0 1 256 2 1 166 1 0 256 1 7 389 2 3 112 0 2 112 29 0 320 4 5 80 10 7 651 1 0 216 13 7 123 0 1 306 chain 23680 chr21 48129895 + 28840752 28841043 AluY 311 + 9 297 112149 15 4 0 93 0 1 14 0 1 69 1 0 95 chain 27132 chr21 48129895 + 28843391 28843704 AluY 311 + 1 308 95821 122 3 0 3 3 0 182 chain 4410 chr21 48129895 + 28852819 28852873 MSTD 398 - 330 384 201795 54 chain 4299 chr21 48129895 + 28853915 28853962 L1PA6 6164 - 84 131 203215 47 chain 24881 chr21 48129895 + 28874288 28874603 AluY 311 + 4 311 105451 122 9 0 150 5 6 29 chain 109439 chr21 48129895 + 28893149 28894425 L1PA6 6164 - 556 1837 34333 32 0 4 387 0 1 857 chain 45365 chr21 48129895 + 28894425 28894962 L1PA6 6164 + 5617 6154 62640 537 chain 102778 chr21 48129895 + 28914343 28915675 L1PA8 5853 + 4515 5853 36059 61 0 1 171 1 0 110 7 13 136 0 2 73 0 2 218 1 0 78 0 1 131 0 2 50 1 0 44 2 0 68 20 19 45 2 1 19 1 0 93 chain 93824 chr21 48129895 + 28916312 28917338 L1PA3long 6157 + 5130 6157 38407 884 1 2 141 chain 222333 chr21 48129895 + 28948130 28950555 L1PA2 6032 + 3606 6029 17737 639 0 2 1529 2 1 237 3 0 15 chain 53268 chr21 48129895 + 28964540 28965260 L1PA7 6471 + 5834 6459 56847 111 99 4 510 chain 34801 chr21 48129895 + 28979563 28979963 L1PA5 6144 - 0 400 76473 400 chain 12355 chr21 48129895 + 28991067 28991349 THE1C 375 + 0 335 150817 105 92 93 28 13 65 44 chain 24169 chr21 48129895 + 29001348 29001656 L1P2 5180 + 2017 2316 109379 155 10 1 143 chain 128057 chr21 48129895 + 29033484 29034956 L1P1 4361 + 2868 4341 28556 378 0 4 426 1 0 474 1 0 58 0 1 96 1 0 23 2 1 12 chain 21684 chr21 48129895 + 29059756 29060004 AluYc 301 + 37 285 121451 248 chain 124774 chr21 48129895 + 29077740 29079533 L1PA8 5853 - 93 2480 29455 19 2 1 38 0 2 21 1 0 26 6 5 40 3 4 40 1 0 329 107 111 112 0 2 5 3 0 107 7 10 30 0 5 433 0 242 171 6 348 286 chain 27857 chr21 48129895 + 29083399 29083713 L1PA3long 6157 - 1 311 93509 206 3 0 98 1 0 6 chain 68188 chr21 48129895 + 29083714 29084463 L1PA3long 6157 + 5082 5830 49166 744 1 0 4 chain 32846 chr21 48129895 + 29105000 29105374 L1PA7 6471 + 6086 6461 79466 229 0 1 145 chain 18205 chr21 48129895 + 29116570 29117199 LTR28 1034 - 291 950 132321 38 28 43 33 99 147 20 192 157 158 36 38 25 chain 46133 chr21 48129895 + 29123576 29124175 LTR12 884 - 15 884 61911 36 0 236 125 6 15 57 0 22 36 1 2 258 0 3 54 1 0 25 chain 82238 chr21 48129895 + 29140020 29141060 L1PA7 6471 - 19 1062 42662 319 7 9 93 1 2 317 2 4 86 2 0 176 1 0 21 0 1 15 chain 69929 chr21 48129895 + 29141060 29141860 L1PA7 6471 + 4596 5412 48386 130 0 15 419 0 1 251 chain 173670 chr21 48129895 + 29162521 29165280 L1PA11 4918 + 1986 4504 21626 121 329 0 95 8 6 10 22 23 274 47 51 13 0 1 140 2 0 191 2 1 44 0 1 715 1 0 167 0 70 98 1 9 10 0 1 42 0 1 258 5 0 27 10 27 11 2 1 13 2 0 68 7 5 8 1 0 10 0 1 5 chain 28038 chr21 48129895 + 29213985 29214367 L1PA7 6471 - 6 391 92862 156 37 40 189 chain 35977 chr21 48129895 + 29222335 29222728 L1PA4 6152 + 5753 6146 74919 393 chain 20792 chr21 48129895 + 29239235 29239551 THE1B 368 + 0 310 124638 169 1 0 23 8 3 5 1 0 9 0 4 19 19 17 57 1 0 4 chain 78311 chr21 48129895 + 29256771 29258022 LTR12D 1347 - 0 1347 44372 29 0 4 118 8 0 87 0 1 26 1 0 34 1 0 25 50 26 281 0 17 17 0 150 184 112 41 26 32 0 10 5 66 205 chain 116139 chr21 48129895 + 29286911 29288534 THE1A-int 1579 + 9 1579 32401 35 0 1 96 86 10 19 1 2 118 12 13 37 13 17 45 1 2 36 0 2 60 5 4 187 0 11 209 1 3 657 0 1 5 chain 24881 chr21 48129895 + 29288534 29288882 THE1A 353 + 0 347 105453 106 13 11 62 3 4 164 chain 262369 chr21 48129895 + 29294264 29297904 L1PB1 5432 - 40 3700 15565 22 1 0 20 9 7 11 11 10 14 15 6 6 3 0 15 1 0 19 3 42 39 2 0 12 3 1 10 20 15 5 1 0 25 1 0 8 1 2 35 0 5 440 5 6 268 0 1 299 4 5 45 4 5 20 0 1 207 7 8 20 1 2 9 5 0 197 9 0 100 0 1 214 1 0 38 0 16 49 6 9 50 8 1 210 2 0 6 15 17 458 0 1 520 5 0 61 2 4 43 chain 14354 chr21 48129895 + 29316395 29316713 L1PB1 5432 - 11 298 143362 17 2 0 13 1 0 21 1 0 19 7 5 15 7 4 19 16 6 6 1 0 14 4 3 43 1 0 11 6 5 12 1 0 40 2 0 6 10 6 9 1 0 13 chain 75995 chr21 48129895 + 29332442 29333449 MER11A 1151 + 12 1151 45483 59 1 100 56 3 1 66 4 0 149 0 1 94 0 1 269 19 54 58 0 1 14 1 2 30 1 0 16 4 5 163 chain 34958 chr21 48129895 + 29334411 29334892 L1PREC2 3366 - 952 1438 76254 28 0 3 203 0 1 108 5 6 59 6 7 4 1 0 67 chain 18059 chr21 48129895 + 29346391 29346639 L1PA10 4194 - 33 277 132700 11 1 0 34 7 5 34 1 0 160 chain 29186 chr21 48129895 + 29350461 29350881 L1PA8 5853 - 3 418 88116 55 0 1 25 10 9 19 2 1 44 1 0 16 1 0 71 2 0 47 1 0 10 5 6 4 1 0 64 0 1 42 chain 6820 chr21 48129895 + 29387318 29387402 MER72 723 + 639 723 178792 84 chain 176030 chr21 48129895 + 29399565 29401831 HERVL-int 5654 + 3354 5644 21353 91 8 1 266 0 9 281 21 21 95 0 1 61 1 0 6 0 1 311 4 19 710 1 0 56 0 3 70 0 3 19 0 1 265 chain 24997 chr21 48129895 + 29401840 29402277 MLT2A2 560 + 0 558 104809 162 74 72 67 0 2 6 16 124 25 0 5 37 0 8 50 chain 3421 chr21 48129895 + 29408032 29408072 MER58A 224 - 6 46 216755 40 chain 245982 chr21 48129895 + 29409416 29412744 HERVL-int 5654 - 2303 5643 16452 378 6 0 75 26 18 174 2 1 98 21 7 25 2 11 472 19 20 36 1 3 266 7 14 141 5 9 29 4 3 6 0 1 359 3 0 81 1 0 160 0 1 23 0 1 40 9 7 301 1 0 4 0 1 105 0 3 66 9 5 79 0 1 4 7 6 48 0 21 123 0 1 44 0 1 68 chain 12103 chr21 48129895 + 29413271 29413446 THE1D-int 1627 + 1422 1600 151787 62 0 1 79 0 1 4 10 8 14 0 3 6 chain 12010 chr21 48129895 + 29422354 29422530 L1PA8 5853 + 5684 5853 152154 4 1 0 25 4 0 29 1 0 18 8 7 86 chain 10446 chr21 48129895 + 29438611 29438772 MER121 330 - 110 261 158513 17 1 2 114 8 0 6 3 0 12 chain 69741 chr21 48129895 + 29444511 29445580 MER11B 1079 + 0 1065 48498 354 3 6 65 13 12 99 1 2 4 1 0 27 4 0 6 71 75 90 13 3 11 0 1 4 1 0 7 6 8 46 5 6 41 0 1 16 4 5 162 1 0 14 chain 167350 chr21 48129895 + 29457503 29459908 L1PB1 5432 - 23 2424 22352 5 1 0 13 1 0 21 1 0 24 21 19 18 40 28 44 1 0 16 2 1 53 2 0 9 16 11 9 1 0 13 0 13 7 6 7 119 1 0 76 0 1 194 6 7 71 4 0 8 0 1 12 0 4 211 0 1 37 3 1 135 0 1 40 0 2 364 0 3 78 3 0 10 23 8 43 11 10 41 3 4 9 8 5 18 1 23 5 0 1 28 1 0 386 0 1 132 chain 49214 chr21 48129895 + 29469167 29469795 L1PA8 5853 + 5215 5836 59582 349 1 0 44 3 1 70 1 0 9 1 0 56 2 1 15 2 1 75 chain 28154 chr21 48129895 + 29487126 29487521 MLT2A2 560 - 58 560 92447 86 12 121 112 1 0 8 8 7 168 chain 3313 chr21 48129895 + 29490820 29490858 THE1D 372 - 27 65 218725 38 chain 34804 chr21 48129895 + 29505857 29506257 L1PA4 6152 + 5741 6141 76468 400 chain 29540 chr21 48129895 + 29533752 29534156 LTR7 482 + 0 477 86476 10 0 1 58 8 46 109 8 40 18 1 0 25 0 1 11 0 2 156 chain 262786 chr21 48129895 + 29534163 29537562 HERVH-int 3825 + 0 3825 15546 56 1 4 273 1 0 66 123 352 12 0 2 15 2 0 7 3 8 163 9 8 270 28 3 98 6 1 93 9 0 24 0 2 13 1 0 309 0 1 312 0 5 204 0 1 42 0 10 94 0 3 93 1 0 5 4 1 520 16 19 31 8 218 101 3 0 6 1 4 376 chain 30201 chr21 48129895 + 29538816 29539231 LTR7 482 + 0 470 84190 69 8 46 109 0 1 8 0 31 48 2 0 46 13 0 112 chain 20849 chr21 48129895 + 29549927 29550161 L1PA5 6144 + 5910 6144 124464 234 chain 3632 chr21 48129895 + 29558372 29558417 MADE1 96 - 50 95 213115 45 chain 123948 chr21 48129895 + 29568533 29570097 THE1A-int 1579 - 12 1579 29716 39 2 1 434 6 13 509 2 0 274 6 5 292 chain 5597 chr21 48129895 + 29574558 29574648 L1MA1 4479 - 987 1075 189106 38 15 13 37 chain 32852 chr21 48129895 + 29589970 29590425 MLT2A1 477 - 0 477 79454 39 27 42 222 1 5 18 0 2 6 0 1 142 chain 164300 chr21 48129895 + 29590438 29592482 HERVL-int 5654 - 13 2072 22771 35 0 4 160 21 27 387 0 1 264 10 11 24 7 5 63 0 1 24 0 1 52 0 3 997 chain 11235 chr21 48129895 + 29592528 29592668 MLT2A1 477 - 159 299 155282 140 chain 13317 chr21 48129895 + 29592672 29592838 MLT2A1 477 - 310 477 147024 25 1 2 140 chain 32183 chr21 48129895 + 29635007 29635437 MER57A1 433 + 0 433 80557 16 0 1 253 12 13 32 0 1 117 chain 12653 chr21 48129895 + 29653807 29653947 L1PA6 6164 - 289 429 149631 140 chain 13800 chr21 48129895 + 29653947 29654107 L1PA5 6144 + 5977 6137 145268 160 chain 3336 chr21 48129895 + 29660931 29660981 MLT1C 463 + 54 97 218299 12 7 0 31 chain 388067 chr21 48129895 + 29673699 29679176 HERVL-int 5654 + 0 5652 10517 116 280 0 56 0 17 55 0 1 175 0 2 718 0 4 61 3 0 99 3 1 65 20 17 515 1 2 307 0 1 286 0 1 189 292 47 1302 3 1 263 4 7 207 1 0 123 0 1 70 6 669 58 6 13 127 3 13 63 chain 17281 chr21 48129895 + 29676657 29676884 HERVL-int 5654 + 3065 4018 134833 132 3 729 92 chain 87611 chr21 48129895 + 29701030 29702085 MER11C 1089 - 17 1089 40531 99 6 5 230 0 1 45 0 4 367 0 4 62 0 9 246 chain 5459 chr21 48129895 + 29725788 29725855 L1P1 4361 - 35 101 190419 21 1 0 45 chain 31646 chr21 48129895 + 29725869 29726228 L1PA3long 6157 + 5782 6156 81412 114 0 15 245 chain 29112 chr21 48129895 + 29749114 29749503 MER51B 395 + 0 386 88501 213 2 0 30 15 14 129 chain 8621 chr21 48129895 + 29762594 29762701 MLT1B 390 - 0 107 167630 107 chain 17510 chr21 48129895 + 29771733 29772067 THE1B 368 + 0 368 134239 44 0 15 104 7 6 29 69 80 24 8 17 49 chain 27953 chr21 48129895 + 29804697 29805000 AluYa5 310 - 12 310 93155 8 5 0 290 chain 8852 chr21 48129895 + 29810674 29810770 L1PA5 6144 - 14 110 166366 96 chain 38289 chr21 48129895 + 29844765 29845362 L1PA16 3655 + 2761 3370 71723 142 1 0 10 14 13 16 8 0 48 0 21 72 7 9 112 7 6 49 3 6 26 2 0 43 6 5 31 chain 20308 chr21 48129895 + 29870251 29870507 L1PA4 6152 - 9 265 126210 131 7 0 17 1 8 100 chain 20901 chr21 48129895 + 29874056 29874280 AluYb8 318 + 91 314 124272 32 1 0 191 chain 7171 chr21 48129895 + 29877081 29877194 MSTA-int 1630 - 11 123 176268 59 15 15 31 1 0 7 chain 2678 chr21 48129895 + 29900416 29900471 MLT1H 522 - 0 56 230453 20 13 14 22 chain 55450 chr21 48129895 + 29907131 29907900 MER4E 760 - 7 760 55437 176 71 50 144 0 4 26 0 1 83 1 0 4 1 2 202 1 0 42 1 2 17 chain 124174 chr21 48129895 + 29930326 29932025 L1PA10 4194 + 2478 4161 29642 151 0 1 27 10 0 19 11 15 271 1 0 371 2 1 346 0 1 155 7 8 211 44 47 12 8 5 24 6 1 6 6 0 11 chain 141208 chr21 48129895 + 29935492 29937113 SVA_D 2077 + 0 2065 25952 25 5 0 552 40 0 339 1 490 659 chain 21580 chr21 48129895 + 29938912 29939151 AluYf4 310 + 59 298 121847 239 chain 4263 chr21 48129895 + 29958937 29959011 MER95 416 + 340 416 203716 42 12 14 20 chain 3623 chr21 48129895 + 29965189 29965262 Tigger4 2445 + 2239 2310 213296 23 8 7 15 2 1 25 chain 99058 chr21 48129895 + 29971917 29973245 THE1B-int 1605 - 11 1372 37011 260 11 12 145 9 10 114 7 12 344 29 30 210 0 25 199 chain 13160 chr21 48129895 + 29976591 29976741 L1PA6 6164 + 6012 6161 147612 135 1 0 14 chain 51675 chr21 48129895 + 29984258 29984979 L1PBa 3878 + 3043 3748 57842 12 15 18 25 5 0 124 4 1 61 7 0 166 1 0 267 6 5 16 2 0 10 chain 93072 chr21 48129895 + 29992439 29994409 L1P3 4156 - 40 1602 38610 9 2 0 145 3 4 219 0 1 157 318 0 81 1 0 10 16 37 331 492 381 111 0 1 75 chain 31813 chr21 48129895 + 29993797 29994223 LTR7B 505 - 7 505 81142 44 14 13 77 1 0 84 0 2 25 7 69 71 0 10 103 chain 155412 chr21 48129895 + 29994409 29996311 L1PA7 6471 + 4567 6468 23935 549 5 4 139 3 0 310 17 11 41 0 3 10 0 1 10 1 2 63 0 1 446 0 1 149 11 10 58 0 1 80 0 2 10 chain 2819 chr21 48129895 + 30000151 30000185 MER51A 677 + 220 254 228489 34 chain 68183 chr21 48129895 + 30002509 30003261 L1PA4 6152 + 5399 6151 49169 752 chain 12357 chr21 48129895 + 30037748 30037882 L1HS 6032 + 5847 5981 150809 134 chain 41133 chr21 48129895 + 30046229 30046763 MER41A 554 + 0 542 67740 378 1 0 19 8 12 59 9 14 60 chain 541492 chr21 48129895 + 30049239 30055379 L1PA4 6152 + 6 6143 2590 1037 0 2 187 4 5 160 9 0 8 2 11 949 0 1 166 6 0 1781 0 1 342 0 1 1331 0 6 112 9 0 37 chain 23574 chr21 48129895 + 30067042 30067335 AluY 311 + 11 298 112713 66 12 5 50 0 1 165 chain 16601 chr21 48129895 + 30068037 30068240 THE1B-int 1605 - 12 207 136668 66 8 0 129 chain 17523 chr21 48129895 + 30103891 30104088 L1PA3long 6157 + 5960 6157 134199 197 chain 31650 chr21 48129895 + 30131539 30131925 THE1B-int 1605 + 1218 1605 81405 167 0 1 219 chain 16348 chr21 48129895 + 30131925 30132247 THE1B 368 + 30 359 137348 77 14 16 45 68 74 64 7 6 47 chain 1590 chr21 48129895 + 30138201 30138249 L1PB2 3958 + 3476 3524 104089 48 chain 31058 chr21 48129895 + 30138265 30138625 L1PA6 6164 + 5794 6154 82421 360 chain 10498 chr21 48129895 + 30138643 30138960 L1PB2 3958 + 3524 3836 104089 21 1 0 73 1 0 27 0 1 35 2 1 72 2 0 17 9 8 57 chain 25828 chr21 48129895 + 30139285 30139646 THE1B 368 + 0 368 100755 44 3 18 106 1 0 24 5 2 93 5 1 5 1 0 26 0 1 48 chain 42118 chr21 48129895 + 30148809 30149359 MLT2A2 560 - 0 560 66485 134 0 1 8 0 11 226 13 12 110 0 1 11 7 5 41 chain 3713 chr21 48129895 + 30151154 30151196 L1MD2 1676 - 863 905 211739 42 chain 24863 chr21 48129895 + 30156547 30156897 LTR12C 1709 + 770 1203 105557 67 42 0 222 0 125 19 chain 3053 chr21 48129895 + 30156615 30156656 LTR12C 1709 + 837 878 141653 41 chain 11675 chr21 48129895 + 30156898 30157057 LTR12C 1709 + 837 1037 118165 134 4 45 21 chain 18342 chr21 48129895 + 30163115 30163314 L1PA3long 6157 + 5958 6157 131951 199 chain 25850 chr21 48129895 + 30171445 30171804 THE1B 368 - 0 368 100656 125 35 45 30 1 0 168 chain 45608 chr21 48129895 + 30184786 30185351 L1P3 4156 - 17 582 62393 24 2 1 7 2 0 96 1 0 4 1 3 153 3 5 272 chain 42231 chr21 48129895 + 30185351 30185896 L1PA4 6152 + 4065 4635 66169 376 20 45 149 chain 77999 chr21 48129895 + 30185897 30187128 L1PA4 6152 + 4635 5565 44512 58 0 1 75 0 1 239 304 0 74 1 0 221 0 2 259 chain 46597 chr21 48129895 + 30187128 30187649 L1PA4 6152 + 5566 6087 61532 521 chain 5064 chr21 48129895 + 30187649 30187708 L1PA4 6152 + 6093 6152 194495 59 chain 164578 chr21 48129895 + 30211342 30214120 L1PB1 5432 + 3112 5420 22731 255 1 2 357 1 6 19 0 1 209 0 1 261 4 5 81 0 1 227 0 1 71 8 15 79 3 6 15 0 3 84 15 16 276 482 11 24 26 20 11 3 1 42 10 9 16 1 0 43 1 0 16 3 0 17 46 40 15 2 0 23 1 0 13 1 0 16 chain 16603 chr21 48129895 + 30215505 30215761 THE1D 372 - 0 330 136658 32 1 0 96 0 1 15 11 84 12 9 10 80 chain 20914 chr21 48129895 + 30218454 30218813 L1PA15 4387 - 60 406 124233 11 5 3 43 17 14 39 1 0 13 4 0 19 2 0 54 2 1 26 7 6 51 4 5 61 chain 5447 chr21 48129895 + 30223051 30223126 MLT2A2 560 - 0 75 190558 48 2 0 5 0 2 20 chain 285318 chr21 48129895 + 30223134 30226766 HERVL-int 5654 - 2008 5654 14336 75 10 0 74 8 27 48 1 2 171 0 1 596 11 13 4 1 0 106 8 9 629 7 8 31 7 6 481 1 0 5 3 4 315 0 2 384 1 0 655 chain 6511 chr21 48129895 + 30232299 30232379 HERVL-int 5654 + 5574 5654 181157 80 chain 28296 chr21 48129895 + 30232379 30232774 MLT2A1 477 + 0 392 91961 169 13 11 16 0 3 106 1 0 64 0 1 15 4 0 7 chain 172583 chr21 48129895 + 30232843 30235343 HERVL-int 5654 + 297 5654 21752 153 4 6 12 0 474 710 0 4 112 8 35 48 0 4 26 0 2644 377 0 3 381 310 0 78 0 3 134 0 6 147 chain 28321 chr21 48129895 + 30234680 30234984 AluYb8 318 + 1 305 91867 304 chain 30650 chr21 48129895 + 30235343 30235729 MLT2A1 477 + 0 385 83119 169 4 1 9 0 1 23 0 1 181 chain 26903 chr21 48129895 + 30266615 30266926 AluYk11 308 + 0 305 96620 237 3 1 54 4 0 13 chain 5979 chr21 48129895 + 30275264 30275338 LTR12F 595 - 418 490 185436 31 2 0 41 chain 102916 chr21 48129895 + 30297880 30299215 L1PA8 5853 + 4504 5853 36020 254 0 1 116 0 1 111 0 4 14 4 7 65 0 1 83 3 4 29 14 16 333 0 2 19 1 0 39 3 5 69 3 2 61 2 1 19 9 8 50 2 3 32 chain 7684 chr21 48129895 + 30309977 30310196 Tigger4a 237 + 9 237 173025 86 105 6 11 0 108 17 chain 14967 chr21 48129895 + 30352713 30352873 L1PA3long 6157 + 5995 6155 141425 160 chain 25257 chr21 48129895 + 30370930 30371229 AluY 311 + 7 298 103432 125 0 1 156 9 0 9 chain 107322 chr21 48129895 + 30372314 30373714 LTR12C 1709 + 0 1709 34888 262 29 25 51 0 43 83 9 6 7 0 1 127 1 2 5 1 0 38 0 278 184 1 0 4 3 6 102 11 4 108 10 9 364 chain 169243 chr21 48129895 + 30382963 30385103 SVA_D 2077 + 16 2072 22148 16 7 0 670 0 40 21 41 1 139 2 83 48 1 2 323 176 0 84 1 0 12 1 19 598 chain 532 chr21 48129895 + 30383678 30383718 SVA_D 2077 + 804 844 176916 40 chain 9662 chr21 48129895 + 30384231 30384407 SVA_D 2077 + 1005 1183 79046 29 2 4 145 chain 23274 chr21 48129895 + 30389660 30389949 AluSx 319 + 10 301 114323 265 0 2 24 chain 24113 chr21 48129895 + 30424583 30424949 THE1B 368 - 11 368 109681 27 20 3 32 0 9 114 6 5 35 9 10 44 1 0 78 chain 23859 chr21 48129895 + 30438587 30438869 AluSp 311 + 9 291 111130 16 1 0 178 0 1 87 chain 101087 chr21 48129895 + 30448708 30450003 LTR12C 1709 - 0 1709 36488 84 1 0 135 0 3 144 5 10 105 0 4 66 0 47 148 0 278 194 0 37 70 3 46 31 1 0 24 3 0 5 0 3 6 15 14 255 chain 4346 chr21 48129895 + 30467015 30467090 MER76 683 + 96 170 202641 41 15 14 19 chain 8224 chr21 48129895 + 30511605 30511705 HY3 101 - 1 101 169813 100 chain 7470 chr21 48129895 + 30529477 30529591 L1MB2 1706 - 12 124 174342 83 1 0 5 11 10 14 chain 6997 chr21 48129895 + 30537677 30537867 L1PB1 5432 - 10 181 177482 18 2 1 11 1 0 22 1 0 17 66 51 22 1 0 29 chain 9408 chr21 48129895 + 30540999 30541117 MER85 139 + 2 132 163512 34 0 2 56 0 10 28 chain 3772 chr21 48129895 + 30560301 30560346 MLT2B4 540 - 1 46 210788 45 chain 22850 chr21 48129895 + 30562195 30562475 AluSg 306 + 4 284 116341 280 chain 5204 chr21 48129895 + 30562863 30562922 MER53 195 + 0 59 192986 59 chain 10943 chr21 48129895 + 30606225 30606420 LTR24C 604 + 0 188 156431 58 0 1 4 1 0 6 1 0 49 41 35 35 chain 18514 chr21 48129895 + 30612988 30613292 THE1B 368 + 0 311 131461 108 14 15 54 30 24 9 0 4 14 6 14 69 chain 12994 chr21 48129895 + 30616739 30616935 L1MA3 4352 + 4123 4311 148264 112 4 0 24 4 2 21 1 0 6 1 0 23 chain 17604 chr21 48129895 + 30619495 30619763 L1PB4 2604 - 80 349 133984 32 1 7 99 18 12 99 1 2 18 chain 4523 chr21 48129895 + 30624412 30624466 MIR 256 - 119 173 200512 54 chain 3884 chr21 48129895 + 30629971 30630012 MLT2A2 560 + 519 560 209121 41 chain 3804 chr21 48129895 + 30642387 30642433 MER81 114 + 16 62 210326 46 chain 24423 chr21 48129895 + 30643525 30643824 AluSp 311 - 14 311 107949 169 5 3 125 chain 20665 chr21 48129895 + 30654123 30654441 THE1B 368 - 31 360 125087 25 1 2 4 1 0 64 1 0 12 1 0 16 16 24 21 1 0 116 0 6 39 chain 7395 chr21 48129895 + 30685417 30685508 MER30B 195 - 0 94 174803 39 0 3 52 chain 11212 chr21 48129895 + 30696990 30697148 L1MD2 1676 - 434 599 155379 105 1 0 7 3 11 42 chain 15549 chr21 48129895 + 30709972 30710383 L1PA5 6144 + 5936 6134 139735 58 0 1 37 219 5 97 chain 13258 chr21 48129895 + 30710098 30710278 AluSp 311 + 86 310 147253 16 9 53 155 chain 37247 chr21 48129895 + 30727321 30727785 LTR12 884 - 354 884 73172 34 0 1 81 4 5 33 2 0 154 0 66 156 chain 81920 chr21 48129895 + 30729267 30730243 HERV9-int 5642 - 818 2739 42797 11 0 1 290 0 9 561 7 942 107 chain 20913 chr21 48129895 + 30736055 30736412 THE1C 375 + 0 368 124235 14 2 0 33 1 2 124 64 76 119 chain 44870 chr21 48129895 + 30759603 30760144 MER41A 554 - 0 554 63211 102 0 3 216 0 10 223 chain 56071 chr21 48129895 + 30764510 30765119 SVA_A 1864 - 0 609 55077 609 chain 33756 chr21 48129895 + 30765780 30766204 L1PA10 4194 - 78 499 78011 30 0 3 1 7 0 160 0 1 226 chain 26428 chr21 48129895 + 30769554 30769936 THE1D 372 + 0 372 98310 75 19 0 107 8 11 45 2 8 126 chain 29774 chr21 48129895 + 30776151 30776526 THE1C 375 + 0 375 85568 127 11 12 210 1 0 26 chain 39052 chr21 48129895 + 30777383 30777922 THE1C-int 1605 + 86 692 70661 17 1 58 9 4 1 144 12 18 107 11 18 234 chain 57766 chr21 48129895 + 30787487 30788221 L1PA6 6164 + 5359 6162 54100 45 0 1 98 0 5 479 5 68 107 chain 109994 chr21 48129895 + 30792419 30793610 L1PA2 6032 - 0 1191 34067 1191 chain 117193 chr21 48129895 + 30793610 30794865 L1PA2 6032 + 3565 4820 32060 1255 chain 6671 chr21 48129895 + 30808364 30808676 MER70C 520 - 102 470 179900 24 1 0 37 209 266 41 chain 54426 chr21 48129895 + 30812264 30812882 L1PA5 6144 - 12 630 56080 618 chain 12935 chr21 48129895 + 30815360 30815517 THE1C 375 + 0 162 148483 22 0 5 135 chain 26772 chr21 48129895 + 30815519 30815807 L1PA2 6032 - 0 288 97076 288 chain 30688 chr21 48129895 + 30816503 30817050 L1PB1 5432 + 4908 5422 83055 195 3 2 8 2 1 24 1 0 8 1 0 10 2 0 3 2 0 9 2 0 52 18 16 44 1 0 12 28 16 18 25 20 24 1 0 21 1 0 13 1 0 18 chain 10792 chr21 48129895 + 30825149 30825283 MLT2B1 522 - 388 522 157027 134 chain 10645 chr21 48129895 + 30863677 30863811 THE1D 372 + 239 372 157622 97 2 1 35 chain 38765 chr21 48129895 + 30990604 30991944 L1PB1 5432 + 4740 5424 71061 64 2 0 8 1 3 220 5 4 64 1 2 9 5 0 24 1 0 9 1 0 11 5 1 10 3 1 8 1 0 8 1 0 32 1 0 19 2 1 46 699 63 10 0 1 12 1 0 21 1 0 13 1 0 14 1 0 6 chain 15801 chr21 48129895 + 31010485 31010814 THE1C 375 - 54 375 138953 23 4 0 61 45 52 74 0 1 25 51 41 29 2 0 15 chain 22617 chr21 48129895 + 31013495 31013838 THE1B 368 + 0 356 117501 105 9 10 54 1 0 32 0 1 12 18 31 61 7 6 44 chain 20501 chr21 48129895 + 31046791 31047161 THE1D 372 + 0 372 125628 62 15 16 26 1 0 56 77 79 133 chain 25160 chr21 48129895 + 31088213 31088574 THE1C 375 + 0 363 103957 61 7 21 9 14 0 84 6 7 149 0 1 31 chain 27063 chr21 48129895 + 31123159 31123548 LTR7 482 - 7 482 96064 42 13 14 35 0 2 76 0 1 10 11 42 25 3 4 73 0 50 101 chain 30254 chr21 48129895 + 31153971 31154287 AluYb9 318 - 2 318 84055 316 chain 5112 chr21 48129895 + 31173562 31173631 MADE1 96 + 11 96 193949 20 1 17 48 chain 4570 chr21 48129895 + 31194538 31194602 MER58A 224 - 113 176 200005 18 2 1 44 chain 3215 chr21 48129895 + 31225580 31225616 MER20 218 - 0 36 220658 36 chain 33112 chr21 48129895 + 31231318 31231684 L1PA5 6144 + 5773 6139 79037 366 chain 44336 chr21 48129895 + 31266433 31266992 MLT2A2 560 - 0 560 63780 353 9 10 197 chain 342102 chr21 48129895 + 31272346 31276602 L1PA7 6471 + 2246 6468 11828 40 45 1 347 11 0 72 0 4 26 8 11 610 11 1 36 0 1 89 1 2 4 1 0 80 0 3 353 1 0 83 2 0 67 0 1 37 0 1 553 0 4 255 9 21 673 2 0 79 0 2 203 1 9 393 0 1 57 4 5 91 5 0 7 chain 6889 chr21 48129895 + 31333809 31333917 MLT1C 463 - 0 111 178281 22 12 15 74 chain 3296 chr21 48129895 + 31355021 31355092 MER20 218 - 143 215 219059 36 19 20 16 chain 30065 chr21 48129895 + 31413017 31413440 LTR7B 505 + 0 497 84612 105 0 10 60 0 38 12 3 27 26 0 2 38 0 1 34 10 9 26 0 1 52 14 13 43 chain 49631 chr21 48129895 + 31422092 31422745 PABL_A 660 + 0 660 59293 25 26 30 531 4 7 67 chain 107140 chr21 48129895 + 31464900 31466241 L1PA8 5853 + 4464 5853 34936 545 0 2 495 0 33 69 2 0 14 0 1 55 15 13 45 9 25 92 chain 4995 chr21 48129895 + 31468092 31468152 L1P4 1494 + 273 333 195193 60 chain 15864 chr21 48129895 + 31516094 31516276 MER41A 554 + 0 183 138763 95 0 1 87 chain 29218 chr21 48129895 + 31519252 31519749 LTR19A 502 - 2 502 87972 40 0 1 158 2 1 33 73 0 14 19 94 87 5 6 66 chain 9377 chr21 48129895 + 31529646 31529744 AluYb8 318 - 8 106 163672 98 chain 7491 chr21 48129895 + 31560053 31560140 L1PA8 5853 + 5766 5853 174200 87 chain 119724 chr21 48129895 + 31570773 31572277 L1PA7 6471 + 3814 6460 31140 392 1 0 194 5 6 20 0 1 90 0 6 149 0 1 276 1 0 41 0 1 28 1 2 55 0 1139 79 25 22 11 5 3 109 1 0 21 chain 164768 chr21 48129895 + 31572818 31574781 L1PA7 6471 - 10 2048 22683 715 2 74 51 1 3 320 1 2 873 chain 16058 chr21 48129895 + 31578517 31578712 L1PA4 6152 - 14 201 138185 127 7 0 54 1 0 6 chain 5186 chr21 48129895 + 31608437 31608499 LTR23 429 - 18 80 193180 62 chain 3923 chr21 48129895 + 31630970 31631086 MER20 218 + 91 208 208519 38 55 56 23 chain 40260 chr21 48129895 + 31637969 31638471 LTR3B_ 500 + 0 500 68930 78 1 0 222 3 2 198 chain 45948 chr21 48129895 + 31650089 31650644 L1PA7 6471 + 5914 6470 62084 224 0 1 331 chain 212469 chr21 48129895 + 31739937 31742334 L1PA5 6144 - 12 2409 18328 845 5 4 889 0 1 658 chain 31175 chr21 48129895 + 31753307 31753679 THE1B-int 1605 + 1232 1605 82212 363 0 1 9 chain 38305 chr21 48129895 + 31791034 31791524 MER41A 554 + 3 498 71700 465 9 14 16 chain 26617 chr21 48129895 + 31814464 31814770 AluY 311 + 3 310 97607 129 0 1 177 chain 37028 chr21 48129895 + 31846886 31847399 L1PA8 5853 - 0 508 73483 17 1 2 72 11 10 11 2 1 52 1 0 9 2 1 70 2 0 44 1 0 33 0 1 185 chain 33929 chr21 48129895 + 31847399 31847815 L1PA8 5853 + 4919 5335 77730 90 3 0 217 0 3 106 chain 27706 chr21 48129895 + 31860863 31861217 THE1A 353 - 0 353 94019 243 2 1 109 chain 148609 chr21 48129895 + 31878207 31880092 L1PA8 5853 - 1182 3067 24804 23 0 1 416 0 1 863 0 1 226 23 17 6 0 6 191 3 1 37 8 7 89 chain 79535 chr21 48129895 + 31880111 31881214 L1PA8 5853 + 4749 5853 43810 159 1 10 92 2 0 114 6 0 6 2 8 65 2 0 5 0 2 207 0 2 140 6 5 44 5 2 68 2 1 9 1 0 56 2 1 15 2 1 92 chain 21462 chr21 48129895 + 31888444 31888789 THE1B 368 - 0 368 122289 80 2 1 44 39 49 22 1 0 114 1 16 42 chain 25046 chr21 48129895 + 31901636 31901935 AluY 311 + 15 311 104562 108 1 0 3 2 0 185 chain 7204 chr21 48129895 + 31915744 31915835 L1MA2 4263 - 357 448 176039 91 chain 22701 chr21 48129895 + 31931521 31931856 MSTA-int 1630 + 1296 1630 117073 96 1 0 16 0 15 3 15 0 89 4 3 41 0 1 59 0 1 5 1 0 5 chain 31801 chr21 48129895 + 31934747 31935120 L1PA7 6471 - 17 391 81164 273 0 1 100 chain 32165 chr21 48129895 + 31978695 31979490 L1M1 2793 + 493 1169 80592 8 1 0 10 1 0 11 3 0 12 23 20 7 3 0 7 1 0 11 1 0 10 143 65 5 0 1 42 41 27 11 2 0 5 2 0 12 20 15 30 1 0 29 2 0 8 1 0 54 24 21 89 1 0 91 0 2 73 chain 168245 chr21 48129895 + 32011395 32013279 L1PA4 6152 - 0 1891 22257 851 0 1 817 0 2 129 0 4 87 chain 24363 chr21 48129895 + 32013279 32013553 L1PA4 6152 + 3983 4257 107794 274 chain 15513 chr21 48129895 + 32016505 32016796 L1PB1 5432 + 5159 5424 139845 10 2 0 51 2 1 16 1 0 44 1 0 11 7 4 11 10 1 19 8 5 14 2 0 24 1 0 21 1 0 13 1 0 16 1 0 4 chain 22772 chr21 48129895 + 32024396 32024674 L1PA5 6144 + 5865 6144 116717 25 1 2 252 chain 65552 chr21 48129895 + 32030321 32031062 L1PA5 6144 - 421 1171 50313 5 0 1 242 0 4 170 0 4 324 chain 34827 chr21 48129895 + 32031062 32031475 L1PA5 6144 + 5731 6144 76437 413 chain 13300 chr21 48129895 + 32043617 32043779 THE1B-int 1605 - 0 163 147078 8 0 1 154 chain 22688 chr21 48129895 + 32092883 32093121 AluYb9 318 - 4 242 117132 238 chain 3018 chr21 48129895 + 32097870 32097905 MLT2D 439 - 149 184 224662 35 chain 275716 chr21 48129895 + 32099749 32103124 L1PA7 6471 + 3079 6464 14885 418 1 0 93 3 0 94 4 2 4 0 1 133 6 5 126 0 1 302 1 2 365 1 0 43 0 4 17 0 1 936 0 6 577 0 1 9 0 2 91 3 4 148 chain 6122 chr21 48129895 + 32161879 32162215 MLT1B 390 + 0 346 184250 24 2 0 16 176 189 18 34 33 20 1 0 11 7 8 27 chain 97883 chr21 48129895 + 32176162 32177317 L1PA6 6164 + 4988 6146 37305 308 2 1 18 0 3 212 0 1 615 chain 49706 chr21 48129895 + 32200147 32200699 L1PA3long 6157 - 5 557 59232 552 chain 102752 chr21 48129895 + 32212252 32213349 L1HS 6032 - 3223 4320 36063 1097 chain 77123 chr21 48129895 + 32213349 32214177 L1HS 6032 + 5205 6032 44861 805 1 0 22 chain 22174 chr21 48129895 + 32219466 32219753 AluSp 311 + 10 301 119474 13 9 11 75 0 2 190 chain 108065 chr21 48129895 + 32225446 32226689 L1PA5 6144 + 4900 6142 34698 141 0 1 483 0 1 279 1 0 330 2 0 7 chain 3049 chr21 48129895 + 32229434 32229469 MLT1C-int 1263 + 18 53 224020 35 chain 64680 chr21 48129895 + 32243953 32244693 L1PA6 6164 - 2 760 50705 733 0 18 7 chain 4952 chr21 48129895 + 32247243 32247305 MLT1B 390 + 328 390 195681 62 chain 3040 chr21 48129895 + 32260500 32260535 MLT1G3 592 - 22 57 224207 35 chain 21589 chr21 48129895 + 32300270 32300659 L1PA11 4918 + 4196 4567 121813 99 14 19 11 1 0 68 2 1 13 3 0 67 2 0 14 6 5 18 19 9 10 13 9 15 1 0 13 chain 20413 chr21 48129895 + 32302667 32302897 L1PA3long 6157 - 701 935 125858 148 0 4 82 chain 62131 chr21 48129895 + 32302897 32303594 L1PA3long 6157 + 5459 6157 51838 353 0 1 189 0 7 1 7 0 147 chain 24723 chr21 48129895 + 32379498 32379830 THE1B 368 - 30 368 106308 95 2 1 12 1 0 12 0 4 14 2 0 8 0 2 21 1 0 129 0 5 35 chain 25059 chr21 48129895 + 32391081 32391371 AluSc5 308 - 10 297 104514 18 3 0 269 chain 37335 chr21 48129895 + 32397147 32397607 LTR2 463 + 0 463 73044 61 0 3 200 1 0 96 14 15 88 chain 19867 chr21 48129895 + 32412644 32412894 LTR8 732 + 8 258 127601 250 chain 7391 chr21 48129895 + 32426433 32426550 MLT1B 390 + 235 354 174824 28 17 19 72 chain 58633 chr21 48129895 + 32438556 32439215 L1PA5 6144 + 5482 6144 53620 4 0 1 81 0 2 574 chain 45923 chr21 48129895 + 32455361 32455990 LTR12 884 - 0 884 62110 31 0 4 118 0 103 83 9 1 86 3 0 3 0 3 52 0 22 155 11 145 78 chain 76559 chr21 48129895 + 32459965 32461077 LTR12D 1347 - 0 1347 45181 90 0 33 112 0 2 10 0 97 152 13 27 100 17 34 122 3 34 35 0 1 102 8 9 50 2 39 13 33 33 25 5 6 119 3 0 6 0 3 78 0 1 14 chain 3299 chr21 48129895 + 32465943 32465983 L1MA4 2864 - 1537 1577 218978 40 chain 28782 chr21 48129895 + 32469294 32469747 MLT2A2 560 - 0 560 89973 132 2 1 14 3 112 81 60 59 161 chain 7891 chr21 48129895 + 32478044 32478175 LTR29 598 - 466 598 171720 37 19 21 34 1 0 40 chain 112513 chr21 48129895 + 32478751 32480284 THE1B-int 1605 - 0 1541 33533 149 6 7 123 0 1 14 18 15 537 18 15 81 1 2 65 3 1 136 0 64 285 51 0 46 chain 23915 chr21 48129895 + 32551075 32551357 AluSp 311 - 17 301 110840 14 1 3 267 chain 4947 chr21 48129895 + 32552689 32552795 MER58A 224 - 72 179 195737 26 29 33 6 3 0 42 chain 8007 chr21 48129895 + 32592725 32592827 L1PA5 6144 + 6044 6144 171008 88 3 1 11 chain 30048 chr21 48129895 + 32601037 32601415 THE1C 375 - 0 375 84652 26 2 1 162 2 0 186 chain 15031 chr21 48129895 + 32642935 32643154 MER30 238 + 0 238 141232 35 0 8 64 10 0 7 1 25 60 3 0 39 chain 18088 chr21 48129895 + 32644290 32644590 MER47A 366 - 0 272 132624 112 21 22 58 30 0 7 0 1 72 chain 44472 chr21 48129895 + 32649350 32650162 MER41A 554 + 0 554 63613 274 0 1 53 266 0 15 0 2 123 0 5 81 chain 39410 chr21 48129895 + 32684042 32684583 MLT2A2 560 + 0 552 70149 58 0 1 121 1 0 16 23 22 171 13 24 76 1 2 61 chain 5509 chr21 48129895 + 32696373 32696442 L1MC2 1988 + 1694 1764 189950 21 0 1 48 chain 19070 chr21 48129895 + 32700879 32701113 L1PA8 5853 - 8 238 129904 85 1 0 16 1 0 56 1 0 9 1 0 64 chain 28559 chr21 48129895 + 32722720 32723146 MSTA 426 + 0 426 90924 13 2 0 6 1 3 185 1 0 24 39 40 155 chain 25469 chr21 48129895 + 32745093 32745398 AluSp 311 + 5 310 102356 305 chain 23305 chr21 48129895 + 32764189 32764481 MER47A 366 + 37 329 114178 292 chain 23364 chr21 48129895 + 32774976 32775275 AluY 311 + 0 293 113842 36 5 1 86 3 1 169 chain 9729 chr21 48129895 + 32784671 32784805 MER1B 344 - 0 140 161943 58 13 19 63 chain 4795 chr21 48129895 + 32796040 32796115 L1MB8 1703 + 1468 1529 197412 53 14 0 8 chain 24622 chr21 48129895 + 32802240 32802539 AluSq2 311 + 1 304 106875 25 0 3 138 1 2 135 chain 21036 chr21 48129895 + 32822913 32823275 THE1B 368 - 0 368 123785 56 13 15 55 62 65 59 12 13 105 chain 24800 chr21 48129895 + 32846859 32847144 AluSp 311 - 13 303 105891 195 1 0 83 0 6 6 chain 29621 chr21 48129895 + 32859851 32860169 AluYb9 318 - 3 318 86147 13 3 0 302 chain 39710 chr21 48129895 + 32864445 32865075 MER4A 717 + 3 695 69744 40 0 1 77 2 0 31 0 8 45 7 30 19 7 19 95 36 57 68 26 25 177 chain 26241 chr21 48129895 + 32891341 32891645 AluSp 311 + 0 309 99046 19 0 2 70 0 3 215 chain 2606 chr21 48129895 + 32908868 32908913 MADE1 96 - 35 96 231597 16 6 22 23 chain 2967 chr21 48129895 + 32922588 32922637 L1MB7 1623 + 1455 1499 225715 24 1 0 13 4 0 7 chain 24175 chr21 48129895 + 32942500 32942792 AluSp 311 + 0 293 109343 83 0 3 189 3 0 6 0 1 11 chain 23991 chr21 48129895 + 32948043 32948329 AluSp 311 + 1 284 110377 12 3 0 271 chain 44783 chr21 48129895 + 32956217 32956712 SVA_D 2077 - 0 493 63311 100 1 0 357 1 0 36 chain 5803 chr21 48129895 + 32960609 32960697 MLT1A0 366 + 0 82 187122 53 0 1 18 7 0 10 chain 22252 chr21 48129895 + 32980774 32981106 MER4E1 777 + 455 777 119112 70 21 20 30 16 7 195 chain 42240 chr21 48129895 + 32981951 32982594 MER9a1 513 - 2 513 66349 178 72 0 74 62 3 91 2 1 164 chain 22968 chr21 48129895 + 32991129 32991490 THE1D 372 + 0 372 115767 72 0 1 5 1 0 24 1 0 4 17 18 65 10 11 83 9 19 70 chain 32020 chr21 48129895 + 32992496 32993014 LTR9 672 - 81 650 80833 29 1 5 15 53 53 78 0 42 56 7 11 195 0 5 24 0 1 12 23 16 7 0 2 18 chain 6447 chr21 48129895 + 32998364 32998452 L1PA7 6471 + 6380 6466 181655 79 2 0 7 chain 8042 chr21 48129895 + 33000973 33001113 THE1B 368 - 83 217 170802 67 21 18 6 1 0 26 3 0 5 0 1 11 chain 6216 chr21 48129895 + 33004340 33004529 L1MB1 2102 - 387 574 183443 26 102 100 61 chain 28703 chr21 48129895 + 33013435 33013740 AluYf4 310 - 5 310 90319 305 chain 11103 chr21 48129895 + 33019982 33020166 MSTB 430 - 34 220 155793 66 0 3 7 28 27 83 chain 104777 chr21 48129895 + 33026325 33027650 LTR12C 1709 + 0 1709 35551 210 12 13 43 0 1 76 12 16 10 0 1 29 0 1 64 26 28 260 0 366 106 0 4 107 0 1 3 0 4 284 1 0 82 chain 18577 chr21 48129895 + 33054471 33054703 AluSc 308 + 60 293 131291 211 3 4 18 chain 25084 chr21 48129895 + 33118158 33118515 THE1B 368 + 2 368 104387 166 2 1 29 35 45 125 chain 12021 chr21 48129895 + 33125996 33126202 MER30 238 - 6 213 152117 25 11 8 36 1 0 40 21 26 72 chain 24686 chr21 48129895 + 33131823 33132108 AluSp 311 - 15 301 106516 14 0 1 271 chain 29445 chr21 48129895 + 33136086 33136432 L1PA5 6144 + 5796 6144 86872 334 1 3 11 chain 110795 chr21 48129895 + 33137796 33139292 THE1C-int 1605 + 1 1597 34004 15 4 6 74 0 57 17 4 1 156 0 6 107 11 18 181 14 30 345 1 2 134 0 1 44 8 9 249 0 13 97 1 0 34 chain 6507 chr21 48129895 + 33157057 33157131 HAL1-2a_MD 234 + 157 231 181189 74 chain 27814 chr21 48129895 + 33157802 33158162 THE1C 375 - 0 361 93652 26 1 0 100 3 4 41 0 3 19 0 1 56 3 0 111 chain 19556 chr21 48129895 + 33168683 33168945 AluSc 308 + 20 283 128501 103 1 0 13 20 21 54 1 2 70 chain 4339 chr21 48129895 + 33178870 33178922 MLT1B 390 - 331 383 202728 52 chain 545347 chr21 48129895 + 33186559 33192674 L1PA5 6144 - 18 6141 2028 56 0 2 529 4 0 1198 0 4 834 1 2 388 0 1 1177 0 2 203 0 2 1725 chain 20954 chr21 48129895 + 33200641 33201010 THE1B 368 + 0 368 124086 177 67 66 63 24 24 38 chain 30501 chr21 48129895 + 33231815 33232358 L1PB1 5432 - 8 514 83426 6 1 0 14 1 0 13 1 0 21 1 0 17 14 12 10 1 0 4 2 0 30 42 28 32 1 0 16 2 1 53 2 0 8 5 1 12 10 8 25 14 10 185 chain 24337 chr21 48129895 + 33235657 33235940 AluSg7 307 - 12 296 108437 163 0 1 120 chain 3153 chr21 48129895 + 33277013 33277059 MLT1B 390 + 0 44 221881 23 3 0 6 0 1 14 chain 2884 chr21 48129895 + 33309929 33309960 Kanga2_a 737 + 548 579 227294 31 chain 26416 chr21 48129895 + 33338244 33338761 L1PB1 5432 - 11 475 98351 17 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 3 1 16 9 0 13 4 1 15 1 0 45 1 0 11 6 5 12 1 0 39 3 1 9 5 1 12 10 8 22 9 0 8 19 5 87 0 2 57 chain 22051 chr21 48129895 + 33345480 33345755 L1PA5 6144 - 4 285 120012 14 1 0 121 1 8 138 chain 8753 chr21 48129895 + 33362513 33362830 MLT2D 439 - 4 340 166900 35 7 26 13 8 0 26 31 26 12 21 31 12 79 77 41 5 10 27 chain 25624 chr21 48129895 + 33389544 33389831 AluSp 311 - 24 311 101606 287 chain 25311 chr21 48129895 + 33397009 33397376 MLT2A2 560 - 80 560 103170 17 0 5 45 9 118 114 17 15 49 0 1 116 chain 164846 chr21 48129895 + 33410984 33413048 L1PA8 5853 - 0 2090 22669 82 12 11 19 2 1 47 8 7 4 1 0 74 2 0 44 1 0 27 1 0 33 0 8 73 2 0 324 0 3 10 0 2 28 0 24 23 0 2 8 8 7 7 0 1 280 6 4 532 1 0 405 chain 133026 chr21 48129895 + 33413048 33414667 L1PA8 5853 + 2114 3750 27281 101 0 2 520 1 2 5 1 0 163 0 1 147 0 2 114 0 3 271 0 1 176 0 1 46 3 5 22 0 5 49 chain 9616 chr21 48129895 + 33420275 33420388 L1PA8 5853 + 5741 5853 162502 21 1 0 91 chain 28676 chr21 48129895 + 33423777 33424143 THE1D 372 + 0 372 90425 185 0 8 7 3 0 138 0 1 33 chain 25876 chr21 48129895 + 33465335 33465681 THE1B 368 - 9 368 100545 167 2 0 16 1 0 64 4 5 48 0 15 44 chain 28335 chr21 48129895 + 33467850 33468168 AluYb8 318 + 0 309 91817 299 9 0 10 chain 36856 chr21 48129895 + 33476745 33477243 MER1A 529 + 30 529 73723 27 2 1 109 1 4 159 1 2 120 3 0 5 2 3 69 chain 3085 chr21 48129895 + 33502975 33503010 MLT1H2 457 + 90 125 223231 35 chain 13580 chr21 48129895 + 33523075 33523267 MER30 238 - 0 208 146055 100 2 0 8 4 22 78 chain 6728 chr21 48129895 + 33524218 33524318 MADE1 96 + 0 96 179490 36 0 1 8 0 1 13 6 0 37 chain 42314 chr21 48129895 + 33525483 33526222 MER4E 760 - 0 760 66252 143 15 0 13 0 11 45 0 1 100 0 1 12 1 0 44 42 48 51 20 16 99 22 25 27 53 71 23 6 7 23 chain 56024 chr21 48129895 + 33531840 33532582 MER4E 760 - 10 760 55105 290 0 2 23 9 10 54 0 2 193 22 25 151 chain 26731 chr21 48129895 + 33532687 33533427 MER4A1 472 - 0 472 97220 173 383 115 184 chain 7328 chr21 48129895 + 33543618 33543751 L1MB7 1623 + 41 176 175243 42 29 31 62 chain 13071 chr21 48129895 + 33543780 33544044 Tigger3a 397 - 23 339 147949 20 9 10 150 68 119 17 chain 3435 chr21 48129895 + 33582468 33582583 MIR 256 + 71 188 216472 33 62 64 20 chain 19045 chr21 48129895 + 33584948 33585305 THE1B 368 + 0 368 129987 44 35 42 25 0 3 6 2 0 53 1 0 8 1 0 17 41 46 124 chain 285789 chr21 48129895 + 33595276 33598605 L1PA2 6032 + 2703 6032 14299 358 2 0 376 0 1 186 45 46 2362 chain 143395 chr21 48129895 + 33637459 33639125 LTR12C 1709 + 0 1709 25579 309 0 1 4 1 0 498 0 40 223 0 2 34 1 0 5 3 1 107 0 4 481 chain 24433 chr21 48129895 + 33648514 33648797 AluY 311 + 25 308 107896 283 chain 121659 chr21 48129895 + 33660631 33662865 L1PB1 5432 + 3714 5427 30493 7 2 0 170 1 0 617 5 6 35 0 1 55 0 4 20 8 6 15 0 1 57 1 2 217 0 9 100 1 2 65 500 2 9 1 0 19 29 34 18 18 4 31 2 1 15 1 0 45 1 0 15 3 0 6 66 51 17 1 0 21 1 0 13 1 0 18 2 0 5 chain 13780 chr21 48129895 + 33663275 33663472 MER30 238 - 0 212 145332 46 3 0 54 2 0 8 3 23 81 chain 19915 chr21 48129895 + 33683340 33683631 THE1B 368 - 61 368 127417 67 1 0 10 1 0 15 17 25 21 1 0 27 0 4 23 0 1 61 0 6 47 chain 5840 chr21 48129895 + 33714813 33714895 7SLRNA 320 - 40 114 186769 15 8 0 59 chain 3300 chr21 48129895 + 33751884 33752004 MIRb 242 - 19 136 218972 23 70 67 27 chain 24075 chr21 48129895 + 33762671 33762941 L1PA4 6152 - 737 1010 109900 111 0 3 159 chain 65872 chr21 48129895 + 33762941 33763674 L1PA4 6152 + 5406 6138 50156 590 1 0 142 chain 5540 chr21 48129895 + 33771855 33772038 L1MB1 2102 + 1783 1959 189657 15 0 1 21 75 71 31 2 0 10 10 8 19 chain 13811 chr21 48129895 + 33774771 33775032 L1MB3 1562 + 1129 1409 145215 54 18 19 31 46 65 53 1 0 58 chain 26684 chr21 48129895 + 33777418 33777801 MER1A 529 - 43 433 97366 15 5 8 5 2 0 250 1 0 10 31 38 64 chain 20882 chr21 48129895 + 33815579 33815867 AluSq2 311 + 11 297 124349 13 0 9 101 1 0 30 1 0 126 9 0 7 chain 43584 chr21 48129895 + 33834849 33835363 MER9a3 513 + 0 513 64703 258 1 0 255 chain 6179 chr21 48129895 + 33835428 33835508 MADE1 96 + 1 96 183748 33 0 15 47 chain 30563 chr21 48129895 + 33840804 33841198 MLT2A1 477 - 83 477 83274 9 8 0 33 0 1 177 1 5 26 0 1 86 0 2 54 chain 18952 chr21 48129895 + 33877183 33877483 THE1B 368 - 61 366 130220 53 44 46 7 0 3 29 1 0 59 2 3 105 chain 8022 chr21 48129895 + 33890259 33890361 MER75 514 - 32 136 170930 35 0 2 67 chain 22463 chr21 48129895 + 33898641 33898905 AluSc 308 - 34 298 118176 264 chain 27210 chr21 48129895 + 33903130 33903478 THE1B 368 + 6 368 95563 38 12 27 106 1 0 191 chain 4287 chr21 48129895 + 33907614 33907666 L1MB2 1706 + 1640 1692 203374 52 chain 37703 chr21 48129895 + 33915477 33915899 L1PA4 6152 + 5715 6152 72550 369 0 10 47 0 5 6 chain 25793 chr21 48129895 + 33920535 33920928 L1PB4 2604 - 152 552 100904 69 3 1 18 17 25 206 19 20 61 chain 21567 chr21 48129895 + 33929289 33929633 PABL_A-int 1935 + 514 849 121896 11 12 1 20 5 6 44 10 12 6 4 0 220 0 3 12 chain 7170 chr21 48129895 + 33930013 33930103 MER41-int 2638 - 2296 2382 176272 46 4 0 40 chain 33713 chr21 48129895 + 33933879 33934312 MER4A1 472 + 1 472 78071 95 1 0 128 3 40 127 7 9 72 chain 4531 chr21 48129895 + 33934608 33934662 MER4E 760 - 707 760 200439 35 1 0 18 chain 39714 chr21 48129895 + 33950018 33950526 MER9a3 513 - 0 513 69738 60 19 20 95 0 2 78 1 0 147 0 1 88 1 2 6 0 1 13 chain 4609 chr21 48129895 + 33987167 33987221 L1MA4 2864 + 2569 2623 199517 54 chain 341828 chr21 48129895 + 34032335 34036609 HERVE_a-int 7009 + 2792 7008 11841 186 1 0 85 2 1 497 1 0 964 0 5 302 0 1 90 0 1 341 2 1 47 9 0 18 0 5 99 0 2 16 1 0 9 2 1 57 0 5 11 1 0 7 1 0 41 1 0 23 1 0 87 1 0 12 1 0 258 2 0 102 1 0 15 1 0 3 1 0 57 2 0 20 1 0 12 1 0 76 15 13 129 1 0 43 6 5 26 1 0 9 2 1 16 1 0 5 2 0 7 1 0 37 1 0 21 1 0 47 1 0 4 1 0 23 12 9 55 2 1 6 4 0 29 3 0 54 3 1 27 1 0 30 1 0 6 17 14 25 2 0 33 5 3 14 34 26 19 6 4 4 1 0 13 chain 3448 chr21 48129895 + 34068504 34068550 MER3 215 + 152 200 216231 6 0 2 40 chain 3607 chr21 48129895 + 34107971 34108087 MER5A 189 - 66 183 213526 18 60 61 38 chain 13921 chr21 48129895 + 34116477 34116718 MER30 238 - 3 237 144856 31 5 8 86 30 17 62 4 7 23 chain 5209 chr21 48129895 + 34132926 34132999 MER5A 189 - 0 75 192923 50 1 2 15 0 1 7 chain 25840 chr21 48129895 + 34139834 34140153 THE1A 353 + 36 353 100701 73 2 1 237 1 0 6 chain 2740 chr21 48129895 + 34156674 34156710 L1MC4 1079 - 198 234 229618 36 chain 34665 chr21 48129895 + 34161985 34162483 MER41A 554 - 82 554 76668 146 49 0 19 0 18 100 0 4 92 0 1 92 chain 29750 chr21 48129895 + 34186917 34187412 MER1A 529 + 0 495 85650 41 39 55 98 29 9 199 1 5 21 0 1 22 21 20 24 chain 92710 chr21 48129895 + 34195476 34196563 L1PA6 6164 + 5067 6159 38741 16 2 5 80 0 1 72 0 1 917 chain 23569 chr21 48129895 + 34229644 34229926 AluY 311 + 9 292 112742 123 0 1 159 chain 24165 chr21 48129895 + 34245343 34245634 AluY 311 + 16 305 109397 117 3 0 12 0 1 159 chain 26631 chr21 48129895 + 34246430 34246788 THE1A 353 - 0 353 97553 243 1 0 21 11 7 82 chain 125086 chr21 48129895 + 34246788 34248366 THE1A-int 1579 - 0 1579 29364 304 0 1 155 0 4 355 1 0 56 29 41 38 24 8 220 0 1 396 chain 27887 chr21 48129895 + 34248366 34248718 THE1A 353 - 0 353 93406 243 1 0 25 0 1 19 3 4 61 chain 29280 chr21 48129895 + 34257876 34258210 L1PA5 6144 - 6 340 87649 334 chain 23497 chr21 48129895 + 34269457 34269734 AluSc5 308 - 25 300 113142 157 2 0 118 chain 23838 chr21 48129895 + 34282461 34282805 THE1B 368 - 0 368 111264 125 23 35 6 0 1 5 3 0 27 1 0 101 9 24 44 chain 24807 chr21 48129895 + 34305438 34305698 AluYa5 310 - 0 260 105852 260 chain 27644 chr21 48129895 + 34309357 34309722 THE1C 375 + 0 373 94227 131 4 8 48 0 1 88 9 12 85 chain 40168 chr21 48129895 + 34321106 34321641 MER41A 554 + 2 534 69082 182 40 35 86 0 1 121 0 1 106 chain 45608 chr21 48129895 + 34336348 34336897 MER41A 554 + 1 554 62395 92 0 1 224 0 1 58 0 1 7 0 1 168 chain 9786 chr21 48129895 + 34337280 34337403 MER2B 336 - 64 187 161673 123 chain 10776 chr21 48129895 + 34339602 34339742 MER50 708 + 65 199 157091 32 6 0 102 chain 49217 chr21 48129895 + 34340281 34340940 LTR9 672 - 16 672 59576 31 2 3 84 2 0 10 2 0 17 6 5 17 1 0 146 1 2 46 7 8 287 chain 23831 chr21 48129895 + 34343127 34343430 AluSq2 311 + 0 311 111307 65 0 7 56 0 1 47 1 0 4 0 1 130 chain 74691 chr21 48129895 + 34364357 34365503 L1PB1 5432 - 12 1142 46164 16 1 0 13 1 0 21 1 0 17 39 34 11 16 6 6 3 0 16 1 0 43 1 0 16 2 1 8 1 0 45 2 0 9 9 5 7 1 0 12 30 31 106 3 2 318 1 4 43 13 6 118 0 4 51 0 1 93 0 2 15 0 13 37 chain 70471 chr21 48129895 + 34368607 34369595 LTR5B 1012 + 0 1012 48180 81 16 27 20 1 14 197 2 1 26 18 17 105 1 0 95 15 16 35 10 10 359 0 2 7 chain 26294 chr21 48129895 + 34383200 34383541 MLT1B 390 - 10 356 98851 237 1 5 50 0 1 53 chain 4427 chr21 48129895 + 34386288 34386347 L1M1 2793 - 98 155 201614 10 1 0 12 1 0 35 chain 8902 chr21 48129895 + 34412725 34412875 L1PA15 4387 - 60 200 166133 12 3 1 44 6 3 50 1 0 13 4 0 17 chain 3262 chr21 48129895 + 34423415 34423451 MADE1 96 - 4 40 219754 36 chain 27272 chr21 48129895 + 34434507 34434820 L1PA5 6144 + 5836 6143 95364 299 6 0 8 chain 42993 chr21 48129895 + 34461797 34462349 MLT2A2 560 - 0 560 65425 147 3 14 246 4 0 94 0 1 58 chain 14540 chr21 48129895 + 34553572 34553862 L1PB1 5432 + 5115 5376 142759 23 1 0 4 3 2 14 5 1 9 2 0 52 2 1 15 1 0 45 1 0 15 2 0 6 23 13 9 2 0 8 1 0 14 2 0 24 1 0 6 chain 9146 chr21 48129895 + 34577738 34577840 MER30 238 + 136 238 164825 102 chain 6116 chr21 48129895 + 34578831 34578903 MER2 342 - 126 198 184302 72 chain 36145 chr21 48129895 + 34588914 34589514 MER4A 717 - 6 693 74714 6 0 1 61 12 1 143 10 5 66 0 1 22 21 36 10 5 22 56 2 3 23 1 82 50 29 14 62 0 2 21 chain 6034 chr21 48129895 + 34589927 34590035 MER57-int 2662 + 2559 2659 184943 24 1 0 6 17 13 23 3 0 34 chain 7436 chr21 48129895 + 34595074 34595194 MER4B 649 - 8 125 174540 8 1 0 38 1 0 22 10 9 40 chain 30114 chr21 48129895 + 34595205 34595521 AluYb8 318 - 2 318 84441 316 chain 41770 chr21 48129895 + 34597628 34598177 MLT2A2 560 - 0 560 66944 69 1 2 76 3 14 14 0 1 74 1 0 126 2 1 183 chain 8938 chr21 48129895 + 34613156 34613280 L1PB4 2604 + 2395 2529 165932 31 0 1 61 2 7 15 0 4 15 chain 40094 chr21 48129895 + 34625831 34626342 MER41A 554 - 7 554 69194 73 0 5 38 0 1 163 0 2 37 0 19 29 0 3 134 0 6 37 chain 3872 chr21 48129895 + 34630214 34630262 MLT1D 503 + 0 49 209278 25 0 1 23 chain 49986 chr21 48129895 + 34646777 34647452 Tigger1 2417 - 936 1610 59023 174 8 10 5 3 0 208 0 2 76 0 5 59 13 6 129 chain 6556 chr21 48129895 + 34673108 34673184 MER41B 635 + 2 78 180811 76 chain 37299 chr21 48129895 + 34690282 34690879 MER50B 698 + 29 612 73082 51 4 7 22 23 32 24 0 1 31 0 3 11 40 31 188 20 0 13 0 1 37 3 2 52 1 0 77 chain 7992 chr21 48129895 + 34698223 34698323 MER4B 649 - 548 648 171107 100 chain 60193 chr21 48129895 + 34708233 34708889 L1PA3long 6157 - 0 658 52733 5 0 2 651 chain 17801 chr21 48129895 + 34732466 34732677 AluSx 319 + 84 295 133401 211 chain 8677 chr21 48129895 + 34735079 34735248 MER21B 843 + 659 827 167321 38 21 26 23 11 8 55 3 0 18 chain 24401 chr21 48129895 + 34745179 34745458 AluY 311 + 20 300 108066 112 0 1 167 chain 25526 chr21 48129895 + 34766885 34767181 AluYk4 311 - 14 311 102115 188 0 1 108 chain 32114 chr21 48129895 + 34768496 34768943 MER1A 529 + 97 529 80664 37 3 9 309 17 0 13 4 0 64 chain 6259 chr21 48129895 + 34880180 34880324 L1MA3 4352 + 4208 4320 183096 52 2 0 22 12 10 16 28 0 12 chain 2902 chr21 48129895 + 34883097 34883128 U6 107 - 55 86 226999 31 chain 26628 chr21 48129895 + 34955227 34955534 AluY 311 + 2 310 97561 130 0 1 177 chain 24076 chr21 48129895 + 34968667 34968971 AluSq2 311 + 6 311 109894 127 6 7 171 chain 12280 chr21 48129895 + 34971017 34971227 MER30 238 + 0 237 151078 14 9 23 41 0 1 21 10 0 17 11 32 60 0 1 27 chain 24778 chr21 48129895 + 34976391 34976685 AluYc3 301 + 0 295 106013 120 0 1 174 chain 23753 chr21 48129895 + 34988243 34988505 L1PA2 6032 - 7 272 111757 144 0 3 118 chain 38751 chr21 48129895 + 34989773 34990228 LTR2 463 - 0 463 71076 333 0 3 100 0 5 22 chain 28350 chr21 48129895 + 34993208 34993510 AluYf4 310 - 7 310 91766 84 0 1 218 chain 7656 chr21 48129895 + 34993510 34993625 MER30 238 - 2 113 173183 41 3 0 41 5 4 25 chain 3509 chr21 48129895 + 35006065 35006106 MER45A 178 - 5 46 215223 41 chain 17825 chr21 48129895 + 35044285 35044498 AluSp 311 + 18 231 133318 10 1 0 110 1 2 91 chain 22597 chr21 48129895 + 35049210 35049472 L1PA5 6144 + 5882 6143 117596 209 1 0 52 chain 25201 chr21 48129895 + 35054518 35054808 AluSp 311 - 10 300 103732 290 chain 26189 chr21 48129895 + 35139194 35139493 AluSq10 312 + 5 304 99245 299 chain 29074 chr21 48129895 + 35150875 35151181 AluYa5 310 - 4 310 88666 306 chain 28099 chr21 48129895 + 35180207 35180510 AluYb8 318 + 0 301 92652 132 2 0 169 chain 3008 chr21 48129895 + 35180983 35181045 MIR 256 - 110 177 224874 30 16 21 16 chain 29429 chr21 48129895 + 35192004 35192319 AluYb8 318 + 0 315 86940 315 chain 106100 chr21 48129895 + 35239972 35241185 LTR12C 1709 - 0 1709 35233 268 0 1 28 0 4 102 0 1 77 0 4 21 0 485 281 0 1 436 chain 550820 chr21 48129895 + 35297926 35303910 L1PA2 6032 - 16 6027 1342 135 1 0 24 0 2 682 0 1 1610 0 2 510 0 22 2955 0 1 67 chain 27738 chr21 48129895 + 35310225 35310699 MER57A1 433 + 38 431 93913 44 32 8 189 0 1 10 13 3 18 0 1 4 50 1 114 chain 3289 chr21 48129895 + 35312183 35312223 L1MB7 1623 + 1452 1491 219187 27 1 0 12 chain 27434 chr21 48129895 + 35329919 35330352 MER1A 529 - 0 440 94866 25 45 47 50 1 0 250 5 0 6 10 21 41 chain 22627 chr21 48129895 + 35347136 35347421 AluSq2 311 - 15 301 117443 167 7 8 111 chain 9153 chr21 48129895 + 35360518 35360802 MSTA 426 - 21 264 164794 87 102 113 35 52 0 8 chain 3613 chr21 48129895 + 35374334 35374412 MER33 330 + 14 103 213439 21 22 33 35 chain 5623 chr21 48129895 + 35385771 35385836 MER5A 189 + 0 65 188843 65 chain 20594 chr21 48129895 + 35422688 35422938 AluSp 311 + 29 277 125318 96 2 0 152 chain 4523 chr21 48129895 + 35509042 35509400 L1ME1 1623 - 761 1183 200515 5 2 0 47 0 4 9 270 332 25 chain 82381 chr21 48129895 + 35510733 35511638 L1PA3long 6157 + 5239 6149 42595 71 0 4 509 0 1 325 chain 42611 chr21 48129895 + 35517939 35518487 MER9a1 513 - 19 513 65884 161 51 0 165 2 1 154 2 0 13 chain 16665 chr21 48129895 + 35523236 35523648 MSTA 426 - 12 426 136493 86 35 34 37 71 69 20 6 8 10 3 0 5 38 45 96 1 0 4 chain 272043 chr21 48129895 + 35533630 35538204 MER61-int 3695 - 13 3665 15077 45 4 9 267 6 2 4 1 0 197 1 0 6 2 0 186 1 0 66 1 0 37 1 0 98 1 0 150 1 0 66 0 3 118 3 0 9 6 10 219 9 14 38 1 0 260 10 1 22 0 9 59 1 0 163 0 5 68 1 0 41 0 1 204 0 2 6 34 8 525 0 1 112 901 0 8 0 2 98 7 6 11 0 1 5 1 0 39 0 1 4 5 3 61 1 2 78 9 6 10 27 29 17 1 0 224 6 5 11 chain 47675 chr21 48129895 + 35536682 35537579 LTR10C 591 - 0 591 60713 501 311 0 70 1 6 14 chain 28601 chr21 48129895 + 35600832 35601210 MLT2A1 477 - 93 477 90727 61 1 0 150 1 5 26 1 2 93 0 1 23 0 1 22 chain 9027 chr21 48129895 + 35601337 35601446 L1MB3 1562 + 801 910 165452 109 chain 5106 chr21 48129895 + 35614801 35614870 L1MC1 2226 + 1980 2047 194015 15 2 0 52 chain 9759 chr21 48129895 + 35627025 35627616 L1MC3 1789 - 557 1116 161797 21 1 0 14 33 29 92 396 369 34 chain 114103 chr21 48129895 + 35659892 35661420 THE1B-int 1605 - 5 1605 33071 67 0 1 233 14 11 622 37 39 145 9 8 15 0 64 112 4 12 198 1 2 71 chain 22968 chr21 48129895 + 35684588 35685158 L1MC1 2226 + 1663 2195 115762 29 12 16 10 6 1 123 8 6 6 1 0 32 8 7 24 1 0 63 3 0 14 2 0 30 156 130 30 1 0 11 chain 5610 chr21 48129895 + 35687527 35687607 MLT1D 503 + 399 481 188980 7 1 0 52 1 4 19 chain 26505 chr21 48129895 + 35724861 35725294 MSTA 426 + 3 426 98023 23 1 2 22 1 0 78 3 0 65 48 52 108 20 9 64 chain 12271 chr21 48129895 + 35775134 35775283 L1PB4 2604 + 2398 2547 151107 149 chain 136581 chr21 48129895 + 35807189 35808785 L1PA5 6144 - 0 1602 26722 676 0 1 173 1 0 266 0 1 4 7 16 217 9 5 243 chain 7338 chr21 48129895 + 35811654 35812021 MLT2A1 477 + 320 477 175175 64 266 56 37 chain 12470 chr21 48129895 + 35813335 35813502 MER6A 605 + 360 531 150375 74 2 1 9 0 4 17 0 1 65 chain 29379 chr21 48129895 + 35849003 35849335 L1PA5 6144 + 5792 6128 87173 13 0 1 187 0 3 132 chain 4235 chr21 48129895 + 35851150 35851196 L1PA5 6144 + 5922 5968 204096 46 chain 13428 chr21 48129895 + 35851202 35851375 L1PA5 6144 + 5973 6141 146584 23 1 0 139 4 0 6 chain 25741 chr21 48129895 + 35853524 35853802 AluYb9 318 + 34 312 101117 278 chain 2777 chr21 48129895 + 35858317 35858366 MER5B 177 + 1 52 229070 23 8 10 18 chain 8569 chr21 48129895 + 35859366 35859460 L1PA5 6144 - 18 112 167915 94 chain 29761 chr21 48129895 + 35863923 35864365 MLT2A1 477 + 0 477 85602 153 15 17 11 0 1 12 0 1 9 0 3 86 19 9 81 0 2 12 7 43 37 chain 174922 chr21 48129895 + 35865984 35868362 L1PB1 5432 - 823 3140 21471 873 17 13 196 0 3 402 58 0 19 1 0 88 0 1 64 0 3 5 3 0 53 0 3 44 3 0 124 9 10 179 6 5 21 11 9 98 1 0 65 5 6 33 chain 10607 chr21 48129895 + 35899985 35900114 MER85 139 - 0 139 157796 39 1 11 89 chain 28520 chr21 48129895 + 35902046 35902406 THE1A 353 + 0 353 91097 108 2 0 211 5 0 34 chain 26604 chr21 48129895 + 35926990 35927354 THE1B 368 - 0 368 97640 174 0 2 19 2 1 130 0 5 11 13 11 15 chain 18655 chr21 48129895 + 35993719 35994094 THE1B 368 + 7 368 131069 75 41 42 45 1 0 4 43 41 16 1 0 12 3 2 56 10 0 68 chain 15682 chr21 48129895 + 36001069 36001680 THE1B 368 - 63 368 139324 63 1 0 10 1 0 18 0 1 4 1 0 4 323 15 5 1 0 4 0 1 11 1 0 46 14 15 34 21 27 32 2 0 15 chain 2356 chr21 48129895 + 36001446 36001479 THE1B 368 - 126 159 234733 10 1 0 18 0 1 4 chain 29663 chr21 48129895 + 36016438 36016748 AluYa5 310 - 0 310 86006 310 chain 3064 chr21 48129895 + 36018799 36018855 MER20 218 - 133 205 223676 6 3 0 32 4 23 11 chain 4727 chr21 48129895 + 36022751 36022811 Charlie4a 502 - 222 282 198206 60 chain 15690 chr21 48129895 + 36051420 36051637 THE1C 375 - 40 261 139303 141 5 4 7 0 4 13 1 2 50 chain 125928 chr21 48129895 + 36051753 36053340 THE1C-int 1605 - 10 1605 29123 60 1 0 282 0 1 35 2 0 513 7 12 182 1 0 58 0 7 432 2 1 12 chain 22332 chr21 48129895 + 36055829 36056187 THE1D 372 + 0 372 118769 160 0 1 8 65 77 95 0 1 30 chain 25989 chr21 48129895 + 36073361 36073633 AluYb8 318 + 42 314 100056 272 chain 7696 chr21 48129895 + 36152212 36152408 MSTA 426 + 168 383 172957 35 95 114 66 chain 5592 chr21 48129895 + 36153768 36153845 MLT1C 463 + 381 456 189158 70 2 0 5 chain 3622 chr21 48129895 + 36166300 36166348 MER58B 340 + 290 337 213312 35 1 0 12 chain 4117 chr21 48129895 + 36300453 36300501 MER3 215 - 105 153 205681 48 chain 9059 chr21 48129895 + 36323621 36323746 L1PA7 6471 - 965 1087 163102 13 12 8 78 0 1 22 chain 77255 chr21 48129895 + 36323746 36324689 L1PA7 6471 + 5530 6465 44849 91 1 0 55 0 3 452 0 1 197 12 7 118 6 0 11 chain 79904 chr21 48129895 + 36330631 36331507 L1PA3long 6157 + 5281 6157 43638 876 chain 7232 chr21 48129895 + 36364044 36364392 MLT1C 463 + 57 427 175878 30 20 21 16 6 0 11 10 11 19 69 119 10 1 0 4 26 0 11 35 35 28 21 24 31 chain 116770 chr21 48129895 + 36497289 36499100 L1PB1 5432 + 3626 5414 32199 186 18 17 142 11 14 115 0 33 340 7 17 133 17 0 9 0 1 57 12 13 99 1 0 58 12 13 225 6 7 9 21 0 24 1 0 4 3 2 14 5 1 9 2 0 49 9 8 12 1 0 41 4 3 16 65 49 13 0 8 8 13 0 17 1 0 22 chain 3518 chr21 48129895 + 36522686 36522729 L1MD2 1676 + 1453 1496 215096 43 chain 22929 chr21 48129895 + 36529752 36530136 THE1B 368 + 0 367 115968 47 28 8 37 13 12 68 2 1 25 6 0 129 14 25 15 chain 4837 chr21 48129895 + 36533854 36533944 MER20 218 + 44 132 196913 34 23 21 33 chain 64610 chr21 48129895 + 36546705 36547408 L1PA3long 6157 + 5167 5870 50742 703 chain 217973 chr21 48129895 + 36555099 36557726 L1PA7 6471 - 17 2667 18005 316 2 1 47 5 6 164 0 1 66 1 0 229 0 3 672 1 0 324 4 17 79 0 4 137 4 5 373 0 3 174 1 0 4 0 1 24 chain 12311 chr21 48129895 + 36561096 36561233 L1PA5 6144 + 6007 6144 150970 137 chain 25272 chr21 48129895 + 36592340 36592696 L1PA8 5853 + 5509 5853 103360 55 1 0 44 2 0 15 1 0 55 2 1 12 6 0 3 0 1 49 9 8 8 1 0 93 chain 23751 chr21 48129895 + 36637187 36637498 AluYk4 311 - 7 309 111771 160 21 12 130 chain 218856 chr21 48129895 + 36642092 36644550 L1PA5 6144 + 3678 6143 17954 947 1 0 393 0 10 181 0 2 6 1 0 273 0 1 173 4 0 479 chain 18386 chr21 48129895 + 36669045 36669340 THE1B 368 + 0 300 131828 54 23 24 91 2 0 5 1 2 22 0 3 13 0 4 6 7 6 10 1 0 60 chain 19278 chr21 48129895 + 36687584 36687873 L1PA8 5853 + 5570 5853 129293 40 2 0 71 1 0 7 11 10 42 2 1 12 8 7 93 chain 29996 chr21 48129895 + 36752754 36753116 L1PA7 6471 + 6088 6456 84824 73 0 1 45 0 5 244 chain 29157 chr21 48129895 + 36766052 36766473 MSTC 436 + 18 436 88268 205 45 37 127 0 5 44 chain 8540 chr21 48129895 + 36771794 36772132 MER96B 391 + 27 350 168064 28 83 82 35 84 80 20 1 0 21 3 0 33 4 3 6 5 0 15 chain 47234 chr21 48129895 + 36781287 36781858 L1PA7 6471 - 3 569 61014 7 5 0 491 1 0 17 0 1 50 chain 18012 chr21 48129895 + 36793445 36793811 MSTB 430 - 44 417 132824 17 1 0 73 108 114 24 5 7 138 chain 164281 chr21 48129895 + 36804475 36806532 HERVL-int 5654 - 3601 5654 22772 153 1 0 78 2 1 404 1 3 100 2 1 122 4 0 6 10 15 193 0 2 260 7 1 714 chain 33891 chr21 48129895 + 36806545 36806984 MLT2A1 477 - 1 477 77792 55 0 37 179 0 1 21 0 2 11 4 1 169 chain 26778 chr21 48129895 + 36836090 36836440 THE1B 368 + 13 368 97057 27 0 5 131 1 0 96 7 9 12 1 0 75 chain 10770 chr21 48129895 + 36838464 36838614 MSTA-int 1630 + 1478 1630 157112 38 2 1 78 0 2 14 1 2 17 chain 18245 chr21 48129895 + 36843226 36843438 L1PA4 6152 - 0 215 132218 13 1 4 198 chain 557852 chr21 48129895 + 36866064 36872089 L1PA2 6032 - 5 6032 516 2946 1 0 816 0 3 2262 chain 117763 chr21 48129895 + 36888087 36889422 L1PA4 6152 + 4786 6143 31872 104 0 2 412 0 4 84 1 4 196 0 1 158 0 1 58 1 12 321 chain 31680 chr21 48129895 + 36924945 36925334 L1PA7 6471 + 6075 6470 81356 64 1 8 227 0 2 9 1 0 74 2 0 11 chain 29166 chr21 48129895 + 36926532 36926845 AluYb9 318 - 8 318 88223 184 3 0 126 chain 4956 chr21 48129895 + 36946824 36946909 L1PB1 5432 - 5 86 195628 5 2 0 18 2 1 12 1 0 21 1 0 5 0 1 18 chain 3759 chr21 48129895 + 36961116 36961159 MER2B 336 - 130 173 210969 43 chain 30293 chr21 48129895 + 36962770 36963124 L1PA7 6471 + 6098 6452 83951 354 chain 36268 chr21 48129895 + 36984400 36984918 MLT2A2 560 - 0 560 74536 144 5 18 51 25 57 110 11 10 41 2 0 129 chain 25403 chr21 48129895 + 36993038 36993398 THE1C 375 + 0 375 102668 66 0 2 76 0 17 18 22 19 152 1 0 25 chain 19125 chr21 48129895 + 37017988 37018209 L1PA7 6471 + 6246 6464 129757 213 3 0 5 chain 3240 chr21 48129895 + 37023939 37023979 MIR 256 + 5 45 220216 40 chain 6533 chr21 48129895 + 37028942 37029033 MSTB2 466 + 0 95 180980 24 8 12 59 chain 3985 chr21 48129895 + 37039068 37039114 MADE1 96 - 50 96 207612 46 chain 9189 chr21 48129895 + 37063293 37063411 LOR1b 457 + 40 157 164609 106 1 0 11 chain 20449 chr21 48129895 + 37071503 37071777 L1PA7 6471 + 6200 6469 125761 13 1 0 95 1 3 10 3 0 138 3 0 10 chain 32822 chr21 48129895 + 37082156 37082577 L1PA7 6471 - 6 430 79499 47 18 21 356 chain 28877 chr21 48129895 + 37090799 37091181 THE1C 375 - 0 375 89557 255 9 6 43 4 0 71 chain 48683 chr21 48129895 + 37102962 37103590 PRIMA4_LTR 623 - 0 623 59970 185 5 5 245 4 0 90 3 2 96 chain 21990 chr21 48129895 + 37118085 37119110 MER41G 495 - 65 412 120269 48 1 2 41 27 26 19 690 12 199 chain 21340 chr21 48129895 + 37141015 37141340 THE1C 375 - 39 360 122721 50 6 3 10 8 4 69 17 16 45 0 4 120 chain 30347 chr21 48129895 + 37149750 37150147 L1PA8 5853 - 0 392 83782 93 1 0 15 9 8 129 2 0 44 1 0 23 0 1 19 1 0 60 chain 137097 chr21 48129895 + 37159406 37160957 L1P1 4361 + 2772 4320 26621 405 1 0 34 0 1 471 1 0 468 1 0 154 1 0 15 chain 20436 chr21 48129895 + 37166450 37166738 L1PA8 5853 - 6 289 125792 87 1 0 19 2 1 33 6 7 11 2 1 6 1 0 72 2 0 46 chain 27561 chr21 48129895 + 37166739 37167055 L1PA8 5853 + 5244 5560 94464 316 chain 3941 chr21 48129895 + 37172516 37172561 MER96B 391 - 212 257 208260 45 chain 305962 chr21 48129895 + 37172860 37176909 L1PBa1 4058 + 12 4040 13172 24 10 0 10 19 16 195 1 0 83 1 0 184 12 11 83 7 6 283 0 2 179 15 14 35 8 10 313 0 13 56 0 3 135 1 0 127 1 0 77 0 1 593 5 6 397 2 0 4 0 1 61 1 0 123 0 3 375 1 0 120 0 7 12 1 0 92 1 0 6 1 0 28 2 1 42 2 0 107 3 1 17 1 0 12 24 16 18 2 1 4 1 0 4 3 0 21 1 0 9 27 23 5 2 0 17 1 0 42 chain 29339 chr21 48129895 + 37176941 37177296 THE1A 353 - 0 353 87347 134 1 0 109 2 1 109 chain 9419 chr21 48129895 + 37203156 37203301 L1PA8 5853 + 5710 5853 163467 30 2 1 15 7 6 91 chain 33893 chr21 48129895 + 37204559 37204992 L1P5 443 + 3 437 77786 4 1 0 369 1 2 22 0 1 36 chain 15908 chr21 48129895 + 37205083 37205432 L1PB1 5432 + 5106 5422 138634 8 3 0 24 1 0 4 3 2 12 2 0 3 2 0 9 2 0 52 2 1 15 2 1 45 59 45 5 1 0 14 2 0 24 1 0 22 1 0 12 1 0 18 chain 46287 chr21 48129895 + 37209470 37210040 THE1C-int 1605 + 1030 1605 61782 267 0 3 257 0 1 37 0 1 9 chain 71050 chr21 48129895 + 37237077 37237909 L1PA6 6164 - 10 848 47908 221 0 1 424 0 2 17 0 1 92 0 2 78 chain 69027 chr21 48129895 + 37247472 37248391 L1PA8 5853 + 4916 5853 48794 93 0 3 58 12 14 232 1 19 59 0 2 119 1 0 49 1 0 43 3 1 79 15 14 39 5 4 16 2 1 92 chain 4542 chr21 48129895 + 37267603 37267684 L1PB1 5432 - 152 231 200314 44 6 5 9 3 2 19 chain 84281 chr21 48129895 + 37270005 37270910 SVA_D 2077 + 1063 2066 41787 249 0 98 656 chain 160630 chr21 48129895 + 37274301 37276184 L1PA7 6471 + 4583 6465 23245 34 0 1 337 1 0 502 0 1 137 12 11 15 1 0 18 6 7 491 1 0 328 chain 45463 chr21 48129895 + 37280655 37281231 LTR71B 605 - 21 605 62533 341 0 1 92 17 25 47 2 1 77 chain 24906 chr21 48129895 + 37287853 37288230 THE1C 375 - 0 375 105304 26 1 0 102 0 1 48 6 0 15 0 3 89 13 0 8 8 22 61 chain 22774 chr21 48129895 + 37328893 37329193 MLT2A1 477 + 0 305 116710 142 8 9 16 8 12 126 chain 10640 chr21 48129895 + 37368337 37368541 L1PB1 5432 - 10 193 157652 18 1 0 13 1 0 21 1 0 22 2 0 16 1 0 5 3 1 18 19 8 4 1 0 14 1 0 43 chain 20552 chr21 48129895 + 37377405 37377719 MER48 407 + 37 385 125468 14 3 0 26 0 18 50 41 60 180 chain 18658 chr21 48129895 + 37384264 37384564 L1MA7 2200 - 820 1125 131057 49 7 8 123 2 3 60 27 30 32 chain 8242 chr21 48129895 + 37434008 37434103 MER2 342 - 96 191 169723 95 chain 10097 chr21 48129895 + 37434103 37434237 LTR5B 1012 - 0 135 160100 68 5 6 61 chain 23563 chr21 48129895 + 37434767 37436508 LTR19A 502 + 11 502 112780 61 1337 86 28 40 1 15 0 36 73 1 2 148 11 14 27 chain 4860 chr21 48129895 + 37470030 37470099 MER4A 717 + 648 717 196680 25 1 2 34 1 0 8 chain 79593 chr21 48129895 + 37471633 37472675 MER11C 1089 + 0 1059 43784 247 7 16 50 0 4 69 1 0 304 1 5 4 1 0 38 0 1 127 0 1 53 1 0 118 0 1 21 chain 18112 chr21 48129895 + 37472957 37473197 AluY 311 + 36 277 132561 95 23 25 45 1 0 76 chain 132221 chr21 48129895 + 37474261 37476535 HUERS-P3b-int 2065 + 13 1857 27582 81 3 0 199 4 0 23 75 0 29 0 1 96 0 4 27 320 0 91 44 45 78 8 4 65 6 10 10 9 8 36 9 8 20 0 1 6 1 0 195 0 6 164 0 1 169 0 1 50 0 1 29 1 0 44 29 2 84 2 0 18 1 0 20 1 0 89 3 1 72 2 0 19 4 1 9 2 0 27 chain 38010 chr21 48129895 + 37476565 37477049 LTR10F 562 + 0 554 72119 122 28 0 11 0 98 323 chain 75555 chr21 48129895 + 37479089 37480034 HERVIP10FH-int 2884 + 149 1088 45744 64 2 0 30 0 3 152 6 0 181 1 0 44 1 0 289 22 23 153 chain 38178 chr21 48129895 + 37482184 37482648 LTR10F 562 + 0 562 71873 76 0 5 74 0 90 169 0 3 145 chain 18048 chr21 48129895 + 37516481 37516730 AluSz 310 + 9 257 132740 111 2 0 31 10 11 95 chain 25638 chr21 48129895 + 37519221 37519517 AluSp 311 - 15 311 101545 296 chain 23172 chr21 48129895 + 37538459 37538747 AluY 311 + 10 295 114799 38 9 6 241 chain 3898 chr21 48129895 + 37538747 37538789 MER1B 344 + 294 336 208880 42 chain 6407 chr21 48129895 + 37551542 37551674 L1ME1 1623 - 343 474 181966 66 41 40 25 chain 56941 chr21 48129895 + 37571740 37572394 L1PA5 6144 - 0 658 54568 11 1 5 642 chain 23338 chr21 48129895 + 37599231 37599512 AluY 311 + 10 289 113988 113 6 4 162 chain 6534 chr21 48129895 + 37604866 37604954 MLT1C 463 - 302 391 180972 37 2 3 49 chain 21836 chr21 48129895 + 37613319 37613601 AluY 311 + 9 292 120868 123 11 12 148 chain 72453 chr21 48129895 + 37639961 37640998 MER11A 1151 - 0 1149 47284 167 0 1 62 0 1 36 18 0 12 18 51 73 4 3 54 6 7 145 0 1 94 9 10 106 0 2 32 4 0 63 7 11 42 8 0 24 7 106 46 chain 23183 chr21 48129895 + 37642939 37643224 AluSg7 307 + 10 294 114760 54 2 0 67 0 1 162 chain 9909 chr21 48129895 + 37662053 37662338 L1MC1 2226 + 1930 2181 161021 50 3 0 14 2 0 50 43 33 6 5 0 15 15 13 10 45 33 27 chain 21905 chr21 48129895 + 37662814 37663118 AluSp 311 + 0 302 120601 69 8 16 151 9 2 59 3 0 5 chain 46813 chr21 48129895 + 37673796 37674650 LTR10C 591 - 0 591 61362 81 0 2 77 0 19 94 5 4 17 288 0 157 5 10 130 chain 52411 chr21 48129895 + 37678330 37679650 MER4E1 777 - 0 743 57345 92 6 0 35 1 16 53 257 0 29 4 0 8 21 12 99 327 0 32 1 0 23 0 1 43 5 9 146 0 7 138 chain 313916 chr21 48129895 + 37685623 37689436 L1PA7 6471 - 1 6469 12861 149 0 1 360 3 0 122 1 0 5 0 1 204 0 5 158 0 5 501 5 2656 42 0 2 698 0 1 204 1 0 659 1 0 77 0 6 8 18 11 191 0 4 123 4 1 235 5 0 39 chain 25166 chr21 48129895 + 37696177 37696472 AluSp 311 - 16 311 103931 295 chain 7635 chr21 48129895 + 37701133 37701307 MER30 238 - 27 164 173319 33 4 0 12 1 7 41 37 10 10 12 0 24 chain 3012 chr21 48129895 + 37725741 37725775 tRNA-Glu-GAA 70 - 36 70 224782 34 chain 12801 chr21 48129895 + 37738438 37738684 L1PA16 3655 - 36 253 149051 16 5 0 7 43 18 37 10 11 128 chain 112190 chr21 48129895 + 37764222 37765551 SVA_B 1603 - 0 1603 33615 587 0 82 217 1 81 18 0 116 306 1 0 149 6 5 12 11 9 21 chain 16781 chr21 48129895 + 37798968 37799217 THE1B 368 + 53 306 136169 116 1 0 21 17 24 16 1 0 10 1 0 66 chain 18685 chr21 48129895 + 37836283 37836635 MSTA 426 + 0 399 130978 81 43 67 53 5 0 22 15 17 56 4 24 14 6 12 53 chain 27074 chr21 48129895 + 37838583 37838960 THE1C 375 - 0 375 96024 44 0 1 105 0 1 26 24 21 106 1 0 71 chain 26126 chr21 48129895 + 37838965 37839280 THE1C-int 1605 - 6 321 99503 315 chain 23011 chr21 48129895 + 37857010 37857298 AluSp 311 - 12 300 115568 30 8 7 92 0 1 158 chain 30123 chr21 48129895 + 37864450 37864766 AluYb8 318 + 0 316 84407 316 chain 20839 chr21 48129895 + 37892621 37892984 THE1B 368 + 0 368 124491 108 14 15 53 33 29 4 1 0 4 0 1 14 7 15 27 0 1 35 7 6 56 chain 16950 chr21 48129895 + 37904716 37904904 L1PA4 6152 + 5963 6151 135731 188 chain 23571 chr21 48129895 + 37960424 37960707 AluSp 311 - 1 285 112735 202 0 1 81 chain 537379 chr21 48129895 + 37988842 37994968 L1PA5 6144 + 3 6143 3259 425 3 0 68 0 2 469 0 1 11 0 1 458 0 5 182 0 3 685 6 5 1276 1 0 81 1 0 513 0 1 943 0 10 79 0 1 121 0 5 372 11 0 109 0 1 292 0 1 20 chain 38442 chr21 48129895 + 38016599 38017275 L1PB1 5432 - 22 591 71528 6 1 0 13 1 0 21 1 0 24 2 0 14 14 11 8 9 0 13 2 0 4 1 0 16 1 0 43 1 0 16 2 1 51 2 0 11 16 11 9 1 0 24 1 0 11 75 0 262 chain 28520 chr21 48129895 + 38044752 38045131 MLT2A1 477 + 0 403 91099 140 0 1 27 1 5 37 5 24 70 1 0 48 0 1 50 chain 26256 chr21 48129895 + 38046438 38046816 THE1C 375 - 0 375 98995 26 1 0 151 24 21 86 4 5 86 chain 24168 chr21 48129895 + 38053925 38054310 THE1D 372 + 0 372 109389 57 29 0 14 1 11 25 1 0 32 0 1 55 2 0 5 13 15 23 5 11 123 chain 7739 chr21 48129895 + 38152434 38152526 Charlie3 2679 + 206 298 172669 92 chain 15330 chr21 48129895 + 38153254 38153484 Charlie3 2679 + 40 260 140392 16 32 16 100 0 6 82 chain 28943 chr21 48129895 + 38196433 38196895 L1PA8 5853 + 5387 5853 89258 176 1 0 47 3 1 67 2 1 9 11 13 39 28 26 27 9 17 43 chain 19574 chr21 48129895 + 38208622 38208838 L1PA3long 6157 - 8 224 128452 216 chain 23678 chr21 48129895 + 38245419 38245705 AluSc 308 - 17 298 112163 9 5 0 272 chain 21038 chr21 48129895 + 38281220 38281508 AluY 311 + 8 294 123771 98 22 21 47 2 1 119 chain 5946 chr21 48129895 + 38333836 38333917 MER33 330 - 57 143 185718 59 0 5 22 chain 8126 chr21 48129895 + 38388464 38388635 MER20 218 - 8 184 170355 42 45 46 30 10 14 44 chain 19247 chr21 48129895 + 38391364 38391585 AluSp 311 + 82 303 129384 221 chain 29288 chr21 48129895 + 38401980 38402665 THE1C 375 - 1 375 87626 197 0 1 15 316 0 17 1 5 139 chain 31622 chr21 48129895 + 38406467 38406873 MLT2A1 477 - 76 477 81450 16 2 0 216 5 2 167 chain 328149 chr21 48129895 + 38419880 38425228 L1PB1 5432 + 19 5144 12271 27 9 8 66 0 1 278 0 1 6 3 1 16 0 1 85 0 1 885 1 0 7 35 16 113 6 10 60 0 5 208 0 1 91 0 1 25 1 0 165 1 0 308 0 1 16 0 1 65 22 11 57 0 1 29 0 3 238 1 0 14 2 1 44 0 3 322 305 0 175 9 5 99 323 0 186 7 8 36 2 1 12 9 7 74 318 767 40 0 1 456 1 5 19 0 1 12 29 0 23 1 0 6 chain 22842 chr21 48129895 + 38431418 38431785 THE1D 372 - 0 372 116386 32 1 0 27 1 3 86 64 68 156 chain 22008 chr21 48129895 + 38443074 38443350 AluSp 311 - 20 301 120194 14 0 2 10 0 2 120 1 2 131 chain 3465 chr21 48129895 + 38456863 38456906 MIR 256 - 132 181 215890 6 0 6 37 chain 542830 chr21 48129895 + 38481376 38487474 L1PA4 6152 + 1 6136 2369 949 0 4 13 1 0 472 0 1 114 2 4 342 0 1 358 1 3 124 0 4 507 0 1 170 0 4 180 0 4 893 0 3 192 0 4 287 1 0 87 1 0 582 0 4 85 0 3 603 0 3 134 chain 221161 chr21 48129895 + 38514084 38516550 L1PA5 6144 + 3663 6141 17801 32 0 1 250 0 1 448 0 5 155 0 1 741 0 4 840 chain 33912 chr21 48129895 + 38552707 38553071 L1PA2 6032 + 5664 6028 77751 364 chain 117133 chr21 48129895 + 38594088 38595402 L1PA3long 6157 - 0 1333 32079 4 0 1 142 0 1 695 0 4 259 0 16 204 3 0 7 chain 11413 chr21 48129895 + 38601497 38601678 MER30 238 - 0 199 154628 48 3 0 52 0 29 11 16 5 10 0 3 41 chain 3757 chr21 48129895 + 38643325 38643414 LTR16A 446 + 333 413 211010 13 20 13 17 1 0 23 2 1 13 chain 20247 chr21 48129895 + 38648258 38648542 AluSp 311 - 17 303 126388 12 5 6 126 17 18 124 chain 119800 chr21 48129895 + 38654628 38656052 LTR12C 1709 - 0 1709 31120 61 3 7 379 0 2 32 0 4 106 3 1 5 1 0 116 0 278 280 0 1 161 1 0 276 chain 16496 chr21 48129895 + 38656052 38656285 MER1A 529 + 297 529 136933 89 3 0 71 6 9 13 2 1 49 chain 22614 chr21 48129895 + 38675396 38675677 AluSc 308 + 10 294 117511 37 0 6 78 3 0 163 chain 137664 chr21 48129895 + 38683207 38685425 L1MA3 4352 - 276 2177 26530 16 11 12 166 15 13 337 332 0 62 0 1 55 0 1 5 12 15 5 1 0 501 0 1 240 12 12 44 0 1 4 10 5 125 0 1 14 14 28 99 2 1 65 0 1 71 chain 10315 chr21 48129895 + 38686643 38686759 MER41A 554 + 352 468 159069 116 chain 107016 chr21 48129895 + 38687467 38688709 L1PA6 6164 + 4709 5948 34968 8 1 0 598 1 0 83 1 0 550 chain 3742 chr21 48129895 + 38694724 38694779 MER3 215 - 7 68 211295 30 3 9 22 chain 11597 chr21 48129895 + 38705379 38706082 L1MC1 2226 - 189 553 153903 46 2 0 11 17 14 25 369 49 6 7 0 31 1 0 7 17 15 42 77 73 45 chain 31556 chr21 48129895 + 38706091 38706708 L1PB1 5432 + 4850 5420 81553 201 1 0 52 6 7 7 13 0 21 1 0 9 17 12 8 2 0 18 0 1 34 2 1 16 9 8 11 11 9 15 1 0 16 30 16 12 11 8 16 2 0 22 1 0 21 4 3 5 1 0 21 chain 4769 chr21 48129895 + 38725566 38725651 MER75B 242 - 11 97 197708 4 1 0 11 1 0 16 7 10 45 chain 30375 chr21 48129895 + 38725773 38726180 MER75 514 - 90 506 83728 68 2 14 152 0 1 25 4 0 156 chain 11650 chr21 48129895 + 38758480 38758682 MER1A 529 + 343 529 153696 43 10 4 63 30 20 56 chain 2662 chr21 48129895 + 38841146 38841186 L1ME3B 1119 + 307 346 230886 28 2 1 10 chain 22991 chr21 48129895 + 38842181 38842450 AluY 311 + 16 287 115665 116 0 1 6 1 2 146 chain 90997 chr21 48129895 + 38854567 38855627 MER11C 1089 - 16 1089 39297 335 0 1 305 7 10 105 0 4 83 0 5 225 chain 11970 chr21 48129895 + 38902608 38902836 AluJr 308 + 66 271 152320 33 79 56 116 chain 28907 chr21 48129895 + 38908807 38909663 L1P3 4156 - 679 1026 89428 259 510 1 87 chain 7923 chr21 48129895 + 38911345 38911435 MER85 139 + 0 90 171500 90 chain 13922 chr21 48129895 + 38911525 38911800 L1PB1 5432 - 136 387 144853 13 7 6 8 1 0 33 2 1 16 1 0 52 2 0 8 20 15 6 1 0 24 3 0 8 2 3 50 10 0 8 chain 37085 chr21 48129895 + 38921846 38922277 L1PA7 6471 - 10 440 73406 153 2 1 276 chain 3125 chr21 48129895 + 38929470 38929504 THE1C 375 - 341 375 222451 34 chain 275384 chr21 48129895 + 38960721 38964395 HERVH-int 3825 - 0 3825 14906 382 34 35 70 8 218 40 4 7 445 282 0 282 0 2 874 1 0 10 0 2 27 9 0 51 1 0 62 5 6 471 0 3 59 1 0 22 0 1 12 1 0 4 0 1 21 14 75 14 7 156 53 0 3 48 4 5 20 8 11 88 0 5 82 2 1 135 0 1 21 chain 25737 chr21 48129895 + 38961714 38961986 AluYa5 310 + 38 310 101135 272 chain 50317 chr21 48129895 + 38968815 38969724 LTR10C 591 + 0 591 58776 39 0 1 244 1 0 261 318 0 46 chain 13917 chr21 48129895 + 38987543 38987691 AluYb8 318 - 1 149 144866 148 chain 4682 chr21 48129895 + 39010202 39010255 MLT1B 390 + 262 315 198734 53 chain 50813 chr21 48129895 + 39038858 39039469 SVA_A 1864 + 1279 1864 58425 36 40 12 80 0 2 455 chain 10135 chr21 48129895 + 39064373 39064514 L1PA8 5853 + 5714 5853 159919 26 2 1 19 2 1 92 chain 19903 chr21 48129895 + 39090896 39091126 L1PA6 6164 + 5932 6162 127471 230 chain 29950 chr21 48129895 + 39092995 39093309 AluYb8 318 - 4 318 84965 314 chain 2847 chr21 48129895 + 39102149 39102179 MER91A 194 + 153 183 227917 30 chain 25379 chr21 48129895 + 39116354 39116625 L1PA4 6152 + 5880 6151 102788 271 chain 68566 chr21 48129895 + 39122389 39123190 L1PA7 6471 + 5667 6468 49005 469 0 1 135 2 0 36 2 3 157 chain 9420 chr21 48129895 + 39135995 39136106 L1PA5 6144 - 173 284 163457 111 chain 12573 chr21 48129895 + 39136106 39136265 L1PA5 6144 + 5987 6144 149947 90 3 1 66 chain 260694 chr21 48129895 + 39146662 39149583 L1PA4 6152 - 9 2934 15658 140 1 0 104 1 2 1542 0 4 340 1 0 169 0 1 623 chain 21595 chr21 48129895 + 39166903 39167191 L1PA8 5853 + 5567 5853 121787 7 1 0 36 2 0 69 1 0 14 1 0 47 2 1 19 1 0 10 0 5 78 chain 27264 chr21 48129895 + 39169078 39169366 AluYb8 318 - 1 289 95386 288 chain 60192 chr21 48129895 + 39181173 39181838 L1PA4 6152 + 5489 6151 52734 110 3 0 552 chain 156415 chr21 48129895 + 39184764 39186919 L1MA2 4263 + 1963 4085 23809 202 0 1 27 1 0 4 1 2 45 0 1 399 6 4 40 1 0 11 0 4 12 0 1 193 0 3 56 0 1 150 0 1 451 2 0 13 6 2 76 1 0 103 28 6 38 3 0 128 34 30 91 7 0 16 0 1 10 chain 27686 chr21 48129895 + 39195705 39196084 THE1D 372 + 0 372 94095 46 10 1 140 4 0 50 2 8 127 chain 12662 chr21 48129895 + 39196805 39196969 THE1D 372 + 0 168 149599 128 0 4 36 chain 8978 chr21 48129895 + 39197014 39197162 THE1D 372 + 221 357 165724 48 30 19 52 1 0 17 chain 76923 chr21 48129895 + 39208277 39209187 L1PA7 6471 + 5547 6456 45011 59 1 0 8 1 0 228 2 3 611 chain 29170 chr21 48129895 + 39262361 39262724 THE1C 375 - 2 367 88196 8 0 2 13 1 0 163 0 1 178 chain 3152 chr21 48129895 + 39277764 39277801 MADE1 96 - 57 95 221894 12 0 1 25 chain 30514 chr21 48129895 + 39295025 39295434 L1PA8 5853 - 8 410 83396 85 1 0 19 0 3 5 12 8 37 1 0 6 1 0 70 6 4 44 1 0 121 chain 31866 chr21 48129895 + 39306105 39306707 THE1D-int 1627 + 12 455 81073 142 177 16 70 3 4 54 1 2 155 chain 20940 chr21 48129895 + 39322836 39323072 L1PA4 6152 - 11 248 124149 132 0 1 104 chain 24242 chr21 48129895 + 39335630 39335915 L1PA7 6471 - 4 292 108980 55 0 3 230 chain 49063 chr21 48129895 + 39357443 39358074 PRIMA4_LTR 623 - 0 623 59702 231 0 1 126 3 0 7 6 5 51 0 1 13 4 0 41 1 0 51 1 0 96 chain 39602 chr21 48129895 + 39363360 39363847 L1PA7 6471 + 5972 6457 69888 165 2 1 87 4 3 229 chain 18626 chr21 48129895 + 39382922 39383123 L1PA4 6152 + 5950 6151 131149 201 chain 126081 chr21 48129895 + 39389270 39390835 THE1B-int 1605 + 0 1605 29071 122 5 6 5 1 0 130 0 3 166 0 25 104 1 5 266 0 6 309 6 8 450 chain 5421 chr21 48129895 + 39407340 39407397 L1PA5 6144 - 179 236 190793 57 chain 15221 chr21 48129895 + 39407397 39407563 L1PA5 6144 + 5972 6138 140713 166 chain 3386 chr21 48129895 + 39431905 39432036 HAL1-2a_MD 234 - 109 234 217360 23 5 22 17 4 31 11 14 0 4 36 0 17 chain 51557 chr21 48129895 + 39463088 39463663 L1PA3long 6157 + 5581 6157 57918 568 0 1 7 chain 24202 chr21 48129895 + 39484839 39485147 AluY 311 + 0 299 109198 133 7 1 127 4 3 22 2 0 13 chain 21057 chr21 48129895 + 39509236 39509507 AluYc 301 + 14 288 123703 105 23 26 143 chain 3154 chr21 48129895 + 39539486 39539577 MER20 218 + 50 140 221865 27 32 36 9 5 0 18 chain 16019 chr21 48129895 + 39556776 39556953 L1PA4 6152 + 5974 6151 138309 177 chain 7826 chr21 48129895 + 39559555 39559657 U13 108 - 8 108 172148 59 2 0 41 chain 35325 chr21 48129895 + 39561526 39561900 L1PA2 6032 + 5655 6029 75765 374 chain 34629 chr21 48129895 + 39565558 39566157 L1PA15 4387 - 31 604 76720 27 11 6 7 2 0 46 6 3 50 1 0 9 4 0 22 3 2 53 1 0 19 13 12 53 24 14 75 0 6 14 0 1 5 1 0 42 6 4 74 2 0 29 chain 395256 chr21 48129895 + 39568922 39575007 L1PB1 5432 - 12 5398 10270 16 1 0 13 1 0 21 1 0 21 8 17 5 2 0 19 26 14 14 1 0 43 1 0 9 0 1 6 2 1 53 2 0 9 86 87 13 2 0 99 0 1 330 1 0 78 1 0 34 24 25 102 2 1 7 0 1 101 10 0 312 15 15 220 2 5 211 7 0 87 0 3 245 0 1 74 9 3 209 0 3 39 1 2 14 1 0 293 1 0 47 11 1 106 0 2 414 2 38 353 0 1 32 0 4 110 20 21 9 11 0 314 716 18 14 1 3 5 2 0 365 0 4 117 41 48 33 11 7 109 10 8 289 4 2 35 chain 3671 chr21 48129895 + 39573931 39573971 MLT2A2 560 + 520 560 212381 40 chain 4698 chr21 48129895 + 39581683 39581780 L1MC4 1079 + 644 739 198555 29 29 27 39 chain 21742 chr21 48129895 + 39584081 39584421 THE1D 372 + 0 340 121237 98 7 6 64 26 26 22 7 8 116 chain 29369 chr21 48129895 + 39590561 39590873 AluYa5 310 - 0 310 87210 184 2 0 126 chain 33960 chr21 48129895 + 39592200 39592757 LTR4 552 + 15 531 77677 4 1 0 23 5 1 19 0 6 6 17 8 36 0 1 16 36 11 35 1 0 12 1 0 173 1 0 37 14 8 120 chain 44376 chr21 48129895 + 39638069 39638641 L1PA7 6471 - 9 561 63720 151 15 14 155 4 5 79 20 0 148 chain 28272 chr21 48129895 + 39676024 39676329 L1PA4 6152 - 1 306 92033 305 chain 52924 chr21 48129895 + 39736472 39737137 L1PA8 5853 + 5195 5853 57071 369 1 0 44 2 0 71 1 0 12 1 0 49 3 2 18 1 0 93 chain 7315 chr21 48129895 + 39740431 39740520 MSTA 426 - 330 419 175330 89 chain 57107 chr21 48129895 + 39800826 39802395 L1PB1 5432 - 6 1018 54464 8 1 0 14 1 0 12 1 0 22 1 0 24 2 0 14 1 0 5 34 24 7 3 0 15 1 0 39 6 5 14 7 6 48 31 27 8 1 0 20 520 11 107 1 14 57 66 24 102 4 5 87 0 2 70 10 7 27 0 4 76 8 13 94 chain 31509 chr21 48129895 + 39836503 39836884 L1PA7 6471 - 14 396 81627 197 8 9 176 chain 3654 chr21 48129895 + 39842034 39842080 MIR 256 + 91 137 212712 46 chain 28501 chr21 48129895 + 39900360 39900671 AluYa5 310 - 0 310 91178 184 1 0 126 chain 89614 chr21 48129895 + 39944780 39945806 LTR5A 1029 + 0 1029 39775 150 1 0 96 0 3 131 0 1 648 chain 25552 chr21 48129895 + 39975890 39976193 AluY 311 + 0 300 101970 126 4 0 37 1 0 117 0 2 18 chain 13947 chr21 48129895 + 39996186 39996383 L1PA8 5853 + 5663 5853 144763 12 5 4 21 4 0 40 2 1 19 1 0 93 chain 24735 chr21 48129895 + 40007866 40008200 THE1C 375 + 0 336 106253 84 0 2 22 11 12 168 1 0 48 chain 27004 chr21 48129895 + 40037324 40037662 THE1A 353 + 0 353 96268 34 0 17 60 1 0 91 1 0 151 chain 18208 chr21 48129895 + 40059438 40059740 THE1B 368 - 61 368 132317 64 6 5 8 1 0 16 0 4 10 1 0 4 19 23 4 1 0 48 15 16 105 chain 26287 chr21 48129895 + 40063034 40063320 L1PA4 6152 + 5865 6151 98869 286 chain 25811 chr21 48129895 + 40069051 40069410 THE1B 368 - 0 368 100824 118 14 22 10 0 4 15 3 1 29 1 0 169 chain 21236 chr21 48129895 + 40135348 40135606 L1PA7 6471 - 6 261 123071 6 3 0 249 chain 15454 chr21 48129895 + 40143460 40143713 L1M1 2793 - 1696 1950 140037 4 1 0 35 0 2 53 1 0 19 1 3 62 28 26 35 0 1 14 chain 118649 chr21 48129895 + 40200248 40201545 L1PA3long 6157 - 1 1301 31558 5 0 2 206 1 0 935 0 2 150 chain 105281 chr21 48129895 + 40201553 40202704 L1PA3long 6157 + 3689 4840 35431 1151 chain 18627 chr21 48129895 + 40215202 40215591 MSTA 426 - 0 426 131144 98 17 31 45 64 60 33 34 61 72 2 1 4 0 1 20 chain 15969 chr21 48129895 + 40226323 40226860 L1MCa 1829 + 893 1403 138457 34 1 0 4 0 1 13 3 0 5 5 0 9 25 31 43 2 1 5 0 2 5 2 0 61 0 2 24 5 4 19 232 207 40 chain 28835 chr21 48129895 + 40246264 40246573 AluYf4 310 + 0 309 89749 309 chain 25863 chr21 48129895 + 40262661 40263038 THE1C 375 - 0 375 100595 168 0 3 6 26 20 32 4 0 7 8 12 39 0 1 87 chain 7547 chr21 48129895 + 40276932 40277023 MLT2B1 522 + 369 460 173895 91 chain 25350 chr21 48129895 + 40312771 40313148 THE1D 372 + 0 372 102954 47 9 0 66 1 0 89 31 36 134 chain 30018 chr21 48129895 + 40344316 40344633 AluYb9 318 + 0 317 84744 317 chain 16233 chr21 48129895 + 40349901 40350091 L1PA5 6144 - 230 420 137666 190 chain 7592 chr21 48129895 + 40370695 40370840 L1PA14 3548 - 83 213 173605 10 6 0 41 1 0 17 1 0 5 2 1 14 4 2 32 4 0 8 chain 4500 chr21 48129895 + 40380035 40380093 MIR3 191 - 65 122 200773 12 1 0 45 chain 3898 chr21 48129895 + 40396065 40396226 MLT1C 463 - 218 391 208884 25 12 21 11 81 84 32 chain 21087 chr21 48129895 + 40419486 40419800 THE1B 368 - 0 368 123586 20 10 9 99 1 0 10 18 74 156 chain 217870 chr21 48129895 + 40440268 40442808 L1PA7 6471 + 3909 6459 18010 100 0 2 249 0 1 224 1 2 1069 0 1 60 1 4 71 5 8 294 1 0 465 chain 18603 chr21 48129895 + 40442963 40443235 L1PA8 5853 - 0 273 131215 89 5 4 19 2 1 47 1 0 11 0 5 49 0 1 15 6 4 28 chain 82469 chr21 48129895 + 40446940 40447992 MER11C 1089 - 16 1089 42559 8 0 1 144 1 0 54 0 1 100 1 2 25 0 1 38 1 0 4 1 5 322 0 1 46 0 4 61 0 9 132 0 1 114 chain 32460 chr21 48129895 + 40472179 40472617 Charlie3 2679 + 2237 2679 80095 199 0 1 86 9 7 73 2 7 69 chain 40249 chr21 48129895 + 40506737 40507217 LTR2 463 - 0 463 68944 163 17 0 300 chain 12959 chr21 48129895 + 40514627 40514787 MSTA-int 1630 + 30 190 148399 160 chain 117686 chr21 48129895 + 40528718 40530111 SVA_D 2077 + 198 2066 31897 519 0 40 146 0 185 83 20 0 73 1 79 24 2 0 5 1 0 15 0 175 381 0 20 123 chain 8519 chr21 48129895 + 40569504 40569647 Tigger3c 601 - 24 169 168200 36 10 11 29 10 11 58 chain 10301 chr21 48129895 + 40576563 40576733 MER1B 344 - 1 167 159128 62 37 33 71 chain 2916 chr21 48129895 + 40625856 40625888 U2 167 - 135 167 226748 32 chain 4063 chr21 48129895 + 40654442 40654487 MER41B 635 + 504 549 206442 45 chain 21695 chr21 48129895 + 40711989 40712267 AluSx3 311 + 5 283 121409 201 1 4 6 3 0 67 chain 3144 chr21 48129895 + 40713734 40713772 Tigger3a 397 + 218 256 222087 38 chain 25942 chr21 48129895 + 40729383 40729737 HSMAR1 1287 - 6 360 100243 130 15 15 68 9 9 132 chain 10728 chr21 48129895 + 40729744 40729872 THE1A 353 - 0 128 157289 128 chain 29008 chr21 48129895 + 40731518 40731887 MER41C 542 + 0 373 88951 38 6 10 325 chain 26927 chr21 48129895 + 40735062 40735368 AluY 311 + 4 311 96524 128 0 1 178 chain 14398 chr21 48129895 + 40790007 40790176 THE1B 368 - 199 368 143212 169 chain 23689 chr21 48129895 + 40803452 40803720 AluSc 308 - 19 287 112087 268 chain 20708 chr21 48129895 + 40838393 40838765 THE1C 375 - 0 375 124935 25 1 0 101 21 21 33 11 10 67 54 59 59 chain 142711 chr21 48129895 + 40864025 40865961 L1PB1 5432 - 5 1880 25697 5 2 0 18 1 0 10 1 4 20 1 0 24 2 0 14 1 0 4 3 1 30 14 1 16 1 0 44 2 1 14 2 1 52 2 0 6 9 5 11 1 0 12 1 0 13 36 5 13 15 0 83 4 6 199 0 1 182 15 18 336 0 2 97 0 1 383 0 2 61 1 4 49 0 1 126 chain 17818 chr21 48129895 + 40870771 40871048 THE1D 372 - 0 281 133340 117 1 3 28 1 0 24 32 34 69 0 1 5 chain 23166 chr21 48129895 + 40879281 40879547 AluSp 311 - 34 300 114831 266 chain 28077 chr21 48129895 + 40881873 40882168 AluYk11 308 - 13 308 92729 295 chain 6110 chr21 48129895 + 40896728 40896811 L1M1 2793 - 1542 1624 184341 72 2 1 9 chain 131110 chr21 48129895 + 40911621 40913194 THE1A-int 1579 - 6 1579 27832 846 0 1 7 1 3 513 5 0 186 0 2 15 chain 10480 chr21 48129895 + 40914879 40915055 MER39B 650 - 384 597 158340 69 0 1 38 33 69 36 chain 28904 chr21 48129895 + 40917142 40917496 THE1A 353 + 0 353 89437 105 6 5 243 chain 90107 chr21 48129895 + 40922178 40923324 L1PA8 5853 - 0 1138 39610 91 3 2 19 2 1 50 1 0 8 1 0 72 5 3 40 17 16 567 1 0 42 9 10 8 1 0 209 chain 4013 chr21 48129895 + 40924606 40924651 MER45A 178 - 1 46 207198 45 chain 76395 chr21 48129895 + 40928831 40929673 L1PA4 6152 - 9 852 45268 104 0 1 738 chain 4026 chr21 48129895 + 40938805 40938922 MER3 215 - 0 123 206976 40 6 0 9 44 56 18 chain 5835 chr21 48129895 + 40966188 40966276 L1PB1 5432 + 5337 5420 186809 9 2 0 24 1 0 21 1 0 13 1 0 16 chain 18777 chr21 48129895 + 40989225 40989584 THE1D 372 - 0 372 130751 133 73 74 60 10 12 18 12 22 53 chain 11833 chr21 48129895 + 40989595 40989773 MER30 238 + 0 226 152890 15 0 18 50 0 1 6 4 5 12 3 31 88 chain 48795 chr21 48129895 + 41010051 41010803 LTR1 825 + 35 814 59877 207 0 28 10 97 76 21 1 0 29 1 14 114 1 0 40 0 1 15 0 4 63 7 10 64 0 1 82 chain 22461 chr21 48129895 + 41052777 41053047 AluSc8 310 + 37 309 118198 95 0 3 170 1 0 4 chain 24412 chr21 48129895 + 41055337 41055691 THE1B 368 - 0 368 108021 39 7 8 28 7 6 115 1 0 104 9 24 44 chain 3522 chr21 48129895 + 41062467 41062542 MER5B 177 - 78 154 215030 25 21 22 29 chain 14382 chr21 48129895 + 41064244 41064526 L1PA15 4387 - 74 335 143263 17 5 0 26 26 18 34 16 11 22 1 0 54 1 0 19 15 14 46 chain 60032 chr21 48129895 + 41075840 41076536 L1PA7 6471 - 1 699 52806 188 0 1 474 0 1 34 chain 37543 chr21 48129895 + 41076547 41077029 L1P3 4156 + 703 1250 72764 87 5 49 4 0 1 152 0 8 28 0 3 187 0 9 19 chain 37731 chr21 48129895 + 41081449 41081940 MER41A 554 - 0 554 72514 97 0 62 205 5 6 184 chain 132972 chr21 48129895 + 41089224 41091068 L1PA14 3548 - 92 1904 27428 42 1 0 18 1 0 9 1 0 9 4 2 29 15 12 114 1 0 83 1 0 7 2 0 16 2 0 5 2 0 103 16 12 26 0 1 15 2 0 14 10 8 178 5 1 62 0 3 5 21 14 132 4 3 48 1 0 578 9 10 253 chain 25736 chr21 48129895 + 41096290 41096646 THE1B 368 + 0 368 101139 44 0 15 49 1 2 58 7 6 24 3 1 138 1 0 31 chain 4337 chr21 48129895 + 41108440 41108495 L1PA6 6164 + 6109 6162 202740 45 2 0 8 chain 26115 chr21 48129895 + 41111190 41111521 LTR17 781 - 455 781 99552 17 10 0 146 0 1 42 0 4 116 chain 378228 chr21 48129895 + 41111829 41116177 HERV17-int 4347 - 3 4335 10810 6 0 1 615 0 9 572 23 1 1671 0 1 519 0 1 297 1 0 512 2 1 26 2 0 34 1 0 51 1 0 15 chain 42317 chr21 48129895 + 41117847 41118352 LTR17 781 - 7 525 66246 24 0 22 401 0 1 17 10 0 53 chain 50547 chr21 48129895 + 41121439 41122115 MER4A 717 - 24 717 58614 232 5 23 70 0 1 28 0 1 104 0 1 40 1 0 27 1 0 5 6 5 106 1 0 50 chain 114145 chr21 48129895 + 41124318 41126102 L1PB2 3958 - 121 3892 33052 84 2 0 73 1 0 36 0 1 35 0 3 22 0 1 23 23 29 54 0 3 21 3 0 13 2 0 55 14 7 16 1 0 54 2 0 101 0 8 52 50 51 144 14 13 14 1 0 140 8 2025 299 5 0 92 1 2 5 1 0 75 12 1 52 6 5 49 1 0 6 3 0 33 2 0 32 13 8 16 5 0 18 chain 10865 chr21 48129895 + 41156978 41157134 L1PA4 6152 - 11 165 156721 54 3 1 74 1 8 8 7 0 9 chain 53792 chr21 48129895 + 41157217 41157807 L1PA3long 6157 - 1233 1823 56140 590 chain 110702 chr21 48129895 + 41157807 41159032 L1PA3long 6157 + 4919 6144 34029 1225 chain 15569 chr21 48129895 + 41164283 41164463 L1PA5 6144 + 5961 6141 139669 180 chain 55897 chr21 48129895 + 41178202 41178831 L1PA5 6144 - 0 629 55185 629 chain 3024 chr21 48129895 + 41191400 41191434 MLT2B4 540 - 0 34 224573 34 chain 278786 chr21 48129895 + 41198005 41202392 L1PB1 5432 - 9 4035 14704 5 1 0 10 5 4 12 1 0 22 1 0 24 2 0 14 11 8 15 17 7 6 1 0 14 1 0 45 17 17 48 22 16 12 108 28 11 4 7 82 0 2 388 5 1 47 11 12 388 11 20 77 96 13 139 1 2 160 8 12 19 0 3 61 145 0 292 0 1 22 0 1 17 0 1 15 0 1 116 1 0 195 0 4 51 10 11 63 61 62 19 17 0 13 3 1 139 32 6 150 1 0 5 5 6 32 0 3 8 3 0 990 16 6 31 0 1 13 chain 5883 chr21 48129895 + 41246897 41246976 MER44B 551 - 404 483 186350 79 chain 7896 chr21 48129895 + 41248073 41248356 L1MB2 1706 - 11 281 171677 28 176 163 79 chain 85390 chr21 48129895 + 41263406 41264363 LTR13A 966 - 0 957 41384 957 chain 28600 chr21 48129895 + 41275511 41275818 AluYk11 308 + 0 307 90733 307 chain 40907 chr21 48129895 + 41321491 41322039 MLT2A2 560 + 0 560 68024 370 10 11 18 12 23 138 chain 3228 chr21 48129895 + 41324876 41324914 MER81 114 + 66 104 220455 38 chain 39139 chr21 48129895 + 41325240 41325735 PABL_B 668 - 52 559 70557 129 0 1 46 0 3 86 6 5 51 0 10 4 1 0 172 chain 27795 chr21 48129895 + 41338091 41338463 THE1B 368 - 0 368 93714 166 2 0 34 1 0 26 1 0 70 3 4 64 1 0 4 chain 21858 chr21 48129895 + 41372527 41372887 THE1B 368 + 0 368 120790 171 1 0 27 47 57 21 13 12 80 chain 536494 chr21 48129895 + 41394801 41400769 L1PA2 6032 - 1 6012 3375 17 0 2 372 0 4 380 0 1 506 1 0 2667 4 0 1157 0 14 239 0 1 109 0 17 11 4 0 216 2 0 5 0 2 55 1 0 95 10 24 117 chain 543135 chr21 48129895 + 41405088 41411096 L1PA2 6032 + 0 6021 2322 208 0 1 48 1 0 269 4 0 145 0 1 245 0 14 3012 0 1 1311 0 1 765 chain 2732 chr21 48129895 + 41413948 41413999 MLT1G1 539 + 246 295 229721 28 12 10 11 chain 31918 chr21 48129895 + 41467919 41468397 MER4A1 472 + 0 472 80983 152 0 1 71 22 28 16 28 7 11 5 12 113 0 1 60 chain 7699 chr21 48129895 + 41473333 41473467 MER1B 344 - 0 128 172942 55 30 24 49 chain 109914 chr21 48129895 + 41478265 41479842 L1PA13 3608 - 1092 2617 34236 50 0 1 50 6 7 410 8 5 7 0 3 362 2 1 40 1 0 68 5 9 38 9 8 70 30 0 10 27 26 193 0 3 28 33 6 130 chain 62956 chr21 48129895 + 41479842 41480784 L1PA13 3608 + 2625 3548 51405 8 1 0 399 0 10 90 1 0 28 6 5 108 1 0 21 1 2 15 0 1 24 4 3 34 1 0 23 2 0 37 19 15 20 1 0 20 6 3 13 5 0 14 1 0 6 7 1 10 4 1 12 chain 542856 chr21 48129895 + 41481364 41487499 L1PA4 6152 + 6 6152 2364 733 0 1 496 0 1 2050 1 2 471 1 5 300 0 1 2070 0 3 13 chain 22543 chr21 48129895 + 41561455 41561829 THE1B 368 + 0 368 117832 47 2 3 10 56 52 60 2 1 18 2 0 177 chain 31264 chr21 48129895 + 41571202 41571621 L1PA8 5853 - 270 694 82056 18 2 1 14 17 22 337 0 1 31 chain 17926 chr21 48129895 + 41571621 41571866 L1PA8 5853 + 5610 5853 133039 72 1 0 8 1 0 4 0 2 44 2 1 19 2 1 92 chain 4641 chr21 48129895 + 41586812 41586879 L1PB3 3668 + 3367 3435 199164 19 2 0 5 0 3 41 chain 28823 chr21 48129895 + 41586879 41587182 AluYb8 318 + 15 318 89791 303 chain 50355 chr21 48129895 + 41609152 41609727 L1PA7 6471 - 10 585 58752 575 chain 18757 chr21 48129895 + 41612833 41613137 L1PA14 3548 + 3178 3465 130810 41 1 0 113 16 11 36 4 2 12 1 0 5 1 0 17 1 0 40 6 0 10 chain 49703 chr21 48129895 + 41630401 41630989 LTR10C 591 + 0 590 59235 508 0 2 80 chain 112893 chr21 48129895 + 41635271 41636833 L1PB3 3668 + 486 2076 33405 152 10 9 94 1 2 50 1 5 176 1 2 156 6 7 65 2 0 157 0 3 114 17 0 27 9 20 225 5 0 22 8 16 129 0 24 135 chain 4872 chr21 48129895 + 41638760 41638843 L1PB3 3668 + 3482 3562 196568 21 1 0 25 11 9 25 chain 3723 chr21 48129895 + 41641635 41641736 MLT1C 463 - 218 329 211589 18 44 54 39 chain 58556 chr21 48129895 + 41651267 41652054 L1PA8 5853 + 5059 5853 53671 460 16 29 16 2 1 44 2 0 66 5 4 8 2 1 6 0 1 44 3 2 19 2 1 92 chain 27704 chr21 48129895 + 41654232 41654547 AluYk4 311 + 0 311 94029 126 4 0 185 chain 19810 chr21 48129895 + 41674110 41674448 THE1B 368 + 0 368 127781 79 25 24 66 1 0 32 0 1 12 0 4 6 14 44 8 2 0 30 7 6 56 chain 151874 chr21 48129895 + 41677349 41679012 L1PA3long 6157 - 981 2644 24357 192 1 0 1112 0 1 358 chain 91287 chr21 48129895 + 41679012 41680022 L1PA3long 6157 + 5148 6157 39147 159 0 1 844 2 0 5 chain 11831 chr21 48129895 + 41689872 41689999 L1PA3long 6157 - 269 396 152904 127 chain 22965 chr21 48129895 + 41690003 41690262 L1PA3long 6157 + 5888 6147 115785 259 chain 3356 chr21 48129895 + 41706452 41706488 L2a 937 + 352 388 217940 36 chain 4920 chr21 48129895 + 41711727 41711795 MADE1 96 - 0 96 196051 24 1 29 43 chain 3197 chr21 48129895 + 41718839 41718875 MER20 218 + 44 80 220992 36 chain 22214 chr21 48129895 + 41718963 41719244 AluSp 311 + 18 301 119285 49 11 13 221 chain 10071 chr21 48129895 + 41723954 41724085 MER85 139 - 0 139 160217 23 2 0 17 0 10 89 chain 26922 chr21 48129895 + 41726494 41726800 AluYk4 311 + 0 306 96544 306 chain 17066 chr21 48129895 + 41729597 41729790 L1PA4 6152 + 5950 6143 135410 193 chain 28238 chr21 48129895 + 41733879 41734183 L1PA3long 6157 - 178 482 92167 304 chain 3590 chr21 48129895 + 41734183 41734223 L1PA3long 6157 + 6117 6157 213828 40 chain 20025 chr21 48129895 + 41735543 41735765 L1PA4 6152 + 5077 5299 127060 222 chain 74950 chr21 48129895 + 41735765 41736601 L1PA4 6152 + 5301 6137 46037 836 chain 8666 chr21 48129895 + 41743740 41743850 MER85 139 + 19 139 167389 71 0 10 39 chain 3029 chr21 48129895 + 41762761 41762793 MLT1C 463 - 372 404 224394 32 chain 26308 chr21 48129895 + 41795315 41795705 MER50B 698 + 330 698 98801 100 20 0 54 11 10 43 5 4 157 chain 31538 chr21 48129895 + 41802165 41802607 MLT2A1 477 + 0 477 81588 138 4 5 26 1 5 29 4 5 188 5 33 24 0 1 23 chain 4508 chr21 48129895 + 41803282 41803348 Tigger2 2703 + 2383 2452 200699 26 5 8 35 chain 4151 chr21 48129895 + 41803388 41803437 Tigger2 2703 + 2381 2430 205235 49 chain 6514 chr21 48129895 + 41807574 41807653 L1MD 993 - 215 294 181128 79 chain 10610 chr21 48129895 + 41823711 41823842 MER85 139 + 9 139 157776 107 1 0 23 chain 11631 chr21 48129895 + 41827900 41828025 L1PA4 6152 + 6026 6151 153770 125 chain 11036 chr21 48129895 + 41837511 41837687 MER30 238 + 34 238 156065 59 19 41 24 1 7 73 chain 26608 chr21 48129895 + 41839737 41840117 MER4A 717 + 7 360 97628 118 19 0 149 0 2 38 1 0 18 0 1 2 10 0 25 chain 23241 chr21 48129895 + 41843723 41843985 L1PA5 6144 - 1 263 114490 262 chain 22806 chr21 48129895 + 41945009 41945267 AluY 311 + 27 285 116545 258 chain 29098 chr21 48129895 + 41946890 41947335 LTR7 482 + 0 482 88564 47 11 11 36 19 21 115 0 31 104 1 2 15 0 2 35 13 14 49 chain 42095 chr21 48129895 + 41949493 41950001 LTR6B 557 - 19 557 66502 37 0 1 4 0 1 10 3 4 121 0 1 293 1 27 39 chain 35763 chr21 48129895 + 41950207 41950689 LTR12 884 + 3 736 75185 160 7 156 21 1 2 34 2 0 218 0 103 39 chain 7148 chr21 48129895 + 41957595 41957768 MSTB1 431 + 42 204 176415 15 5 7 55 39 38 20 13 1 26 chain 3545 chr21 48129895 + 41960192 41960243 MADE1 96 - 45 96 214618 4 0 1 7 1 0 39 chain 14423 chr21 48129895 + 41971145 41971368 L1PA8 5853 - 0 219 143139 92 2 1 19 2 1 52 15 13 41 chain 58874 chr21 48129895 + 41971368 41972081 L1P3 4156 + 3286 4006 53474 208 1 0 95 0 5 274 0 1 27 0 1 70 0 1 38 chain 14651 chr21 48129895 + 42036724 42037071 MSTB 430 + 9 380 142419 75 23 40 32 5 3 25 16 13 13 41 51 29 2 1 19 19 22 48 chain 25828 chr21 48129895 + 42039457 42039789 THE1C 375 + 0 336 100756 37 0 5 148 1 0 146 chain 6048 chr21 48129895 + 42042490 42042733 L1MB3 1562 - 186 433 184821 25 1 0 41 148 153 28 chain 30954 chr21 48129895 + 42070125 42070507 LTR71A 459 + 0 391 82595 372 0 9 10 chain 6344 chr21 48129895 + 42074118 42074300 L1MC2 1988 + 1703 1902 182432 55 0 1 4 88 104 35 chain 24282 chr21 48129895 + 42077828 42078122 AluY 311 + 0 298 108755 7 0 4 173 0 1 92 1 0 21 chain 73972 chr21 48129895 + 42081268 42082140 L1PA7 6471 - 1 886 46530 156 1 2 585 0 1 25 1 3 73 0 5 17 0 4 14 chain 20980 chr21 48129895 + 42084202 42084425 AluYb8 318 + 95 318 123990 223 chain 5234 chr21 48129895 + 42133674 42133735 U3 216 + 7 68 192683 61 chain 268360 chr21 48129895 + 42133745 42137027 L1PA8 5853 + 2551 5841 15270 314 6 7 5 1 0 120 1 0 200 1 0 17 0 1 335 0 18 57 0 2 492 0 1 4 1 0 18 6 5 708 0 1 154 2 0 60 19 14 480 1 0 46 2 0 72 1 0 6 1 0 52 2 1 17 0 2 81 chain 38414 chr21 48129895 + 42178585 42179031 L1PA7 6471 + 6009 6456 71558 304 0 1 142 chain 30223 chr21 48129895 + 42189740 42190057 AluYb8 318 + 0 317 84121 317 chain 20686 chr21 48129895 + 42192015 42192256 L1PA8 5853 + 5323 5564 125013 241 chain 3839 chr21 48129895 + 42192257 42192301 L1PA8 5853 + 5564 5608 209799 44 chain 10428 chr21 48129895 + 42192303 42192435 L1PA8 5853 + 5608 5739 158566 71 1 0 9 1 0 11 0 1 39 chain 7777 chr21 48129895 + 42192459 42192551 L1PA8 5853 + 5761 5853 172430 92 chain 21040 chr21 48129895 + 42206084 42206332 AluY 311 + 29 282 123762 5 0 3 94 0 2 149 chain 25737 chr21 48129895 + 42246343 42246631 L1PA8 5853 + 5276 5564 101134 288 chain 3944 chr21 48129895 + 42246632 42246675 L1PA8 5853 + 5564 5607 208209 43 chain 4178 chr21 48129895 + 42246678 42246728 L1PA8 5853 + 5608 5658 204843 50 chain 2870 chr21 48129895 + 42246728 42246768 L1PA8 5853 + 5659 5697 227521 24 1 0 8 1 0 6 chain 11965 chr21 48129895 + 42246781 42246939 L1PA8 5853 + 5697 5853 152339 46 1 0 17 2 1 92 chain 9960 chr21 48129895 + 42249580 42249895 MSTB 430 - 31 430 160776 69 172 256 74 chain 19728 chr21 48129895 + 42251884 42252140 AluY 311 + 41 297 128017 82 2 0 9 0 1 97 6 7 60 chain 28204 chr21 48129895 + 42267675 42268042 THE1B 368 - 0 364 92293 176 2 0 24 2 1 163 chain 22590 chr21 48129895 + 42286314 42286687 THE1C 375 - 1 375 117632 25 1 0 145 18 14 7 0 4 62 54 56 61 chain 190491 chr21 48129895 + 42287711 42289793 L1PA2 6032 + 3950 6031 20000 1306 1 0 775 chain 110904 chr21 48129895 + 42300394 42301961 THE1B-int 1605 - 5 1604 33964 428 4 17 28 9 10 12 8 4 130 0 1 258 0 1 14 8 9 169 21 21 39 17 81 16 0 1 82 0 6 154 54 0 102 0 2 14 chain 21720 chr21 48129895 + 42312028 42312356 THE1D 372 - 2 359 121315 170 26 32 96 10 33 26 chain 94394 chr21 48129895 + 42317973 42319040 L1PA4 6152 + 5078 6152 38236 298 1 3 762 0 5 6 chain 39548 chr21 48129895 + 42326694 42327133 LTR7 482 + 0 471 69959 264 0 31 120 0 1 55 chain 293140 chr21 48129895 + 42327146 42330915 HERVH-int 3825 + 0 3825 13814 212 0 11 310 11 7 30 1 0 10 1 0 24 2 15 12 3 0 25 1 0 42 124 0 15 42 0 7 21 0 3 0 1 5 2 1 48 2 1 457 16 1 444 8 35 282 0 4 42 0 1 551 0 1 148 0 1 4 2 1 319 9 11 38 0 210 496 chain 40769 chr21 48129895 + 42332172 42332622 LTR7 482 + 0 482 68215 264 0 31 120 0 1 66 chain 59537 chr21 48129895 + 42333102 42333785 L1PA4 6152 - 0 841 53083 260 1 0 411 0 159 11 chain 10102 chr21 48129895 + 42335282 42335488 L1PB1 5432 + 5246 5430 160079 33 1 0 17 27 16 14 3 1 5 1 0 14 2 0 27 1 0 20 1 0 8 1 0 21 1 0 4 1 0 4 chain 43777 chr21 48129895 + 42337023 42337596 L1PA8 5853 - 0 569 64483 93 1 0 19 2 1 52 1 0 9 2 1 70 3 5 39 1 0 42 1 0 238 chain 3895 chr21 48129895 + 42337620 42337664 MER6B 211 + 148 192 208932 44 chain 60158 chr21 48129895 + 42345066 42345748 L1PA4 6152 + 5453 6135 52745 682 chain 44096 chr21 48129895 + 42400031 42400574 MER41A 554 - 0 554 64095 15 0 1 107 0 1 39 0 7 59 0 2 323 chain 29191 chr21 48129895 + 42402896 42403207 AluYa5 310 + 0 310 88091 132 1 0 178 chain 14405 chr21 48129895 + 42412387 42412562 L1M1 2793 + 1316 1492 143194 80 0 1 95 chain 10599 chr21 48129895 + 42423701 42423828 L1PA4 6152 - 1 130 157831 7 0 1 73 0 1 47 chain 20167 chr21 48129895 + 42457757 42458030 AluY 311 + 10 277 126621 123 30 22 112 0 2 8 chain 7909 chr21 48129895 + 42465060 42465144 AluYb8 318 + 222 306 171590 84 chain 55082 chr21 48129895 + 42488576 42489183 L1PA3long 6157 - 5 612 55657 607 chain 68064 chr21 48129895 + 42489183 42489945 L1P1 4361 + 2694 3458 49216 484 0 1 224 0 1 54 chain 29626 chr21 48129895 + 42561662 42562123 MLT2A1 477 - 2 477 86133 16 65 74 60 2 1 136 1 2 13 1 5 24 1 2 142 chain 349557 chr21 48129895 + 42562123 42566235 HERVL-int 5654 - 0 4138 11624 36 0 3 385 7 5 230 0 2 435 2 0 1021 0 1 155 0 4 22 0 13 364 0 9 12 0 1 314 8 4 481 0 3 5 9 6 131 0 1 495 chain 24737 chr21 48129895 + 42570808 42571091 L1PA5 6144 - 8 291 106236 283 chain 9403 chr21 48129895 + 42571805 42571908 L1PA4 6152 - 220 323 163544 103 chain 18320 chr21 48129895 + 42571908 42572122 L1PA4 6152 + 5933 6152 132020 208 0 5 6 chain 42752 chr21 48129895 + 42610430 42610893 L1PA2 6032 + 5569 6032 65717 463 chain 29970 chr21 48129895 + 42628032 42628388 L1PA7 6471 - 14 370 84910 356 chain 3262 chr21 48129895 + 42643344 42643380 MER58D 378 + 334 370 219764 36 chain 88066 chr21 48129895 + 42644811 42645875 MER11B 1079 - 0 1079 40349 22 11 0 26 0 1 100 0 1 52 0 1 104 0 2 264 0 1 171 1 18 100 0 1 135 0 2 78 chain 41659 chr21 48129895 + 42664513 42665117 LTR12_ 688 + 0 688 67080 31 23 8 68 20 14 21 1 2 222 0 103 155 5 6 58 chain 188040 chr21 48129895 + 42671041 42673125 L1PA5 6144 + 4057 6144 20233 1323 0 3 303 0 1 345 1 0 112 chain 29491 chr21 48129895 + 42736519 42736974 MLT2A1 477 - 0 477 86666 37 60 82 13 0 1 54 1 0 86 0 1 33 4 1 57 0 1 36 0 1 74 chain 7307 chr21 48129895 + 42736986 42737122 MLT1C 463 + 32 167 175390 19 5 6 48 22 20 42 chain 2834 chr21 48129895 + 42738029 42738065 MER119 576 - 87 123 228163 36 chain 21535 chr21 48129895 + 42757214 42757570 THE1B 368 + 4 368 122022 165 2 1 28 11 18 14 1 0 10 15 19 47 18 17 45 chain 16604 chr21 48129895 + 42758765 42758962 MER107 203 + 0 202 136656 156 0 5 41 chain 21209 chr21 48129895 + 42774451 42774772 MER1A 529 - 0 309 123182 64 26 22 102 9 1 120 chain 258680 chr21 48129895 + 42783295 42787092 L1PBa 3878 + 48 3733 15770 12 3 0 3 1 0 10 8 5 7 1 0 5 2 0 8 4 3 44 87 39 28 155 4 21 2 0 106 16 19 160 1 0 209 0 2 127 2 0 24 15 14 4 1 0 78 8 11 288 7 12 150 5 7 166 4 0 25 0 3 162 0 1 111 5 0 9 1 0 284 0 8 57 1 2 211 3 0 85 6 9 87 0 3 36 0 3 51 1 4 262 17 98 97 3 0 34 6 9 52 0 2 325 4 0 71 2 1 17 chain 12909 chr21 48129895 + 42788932 42789270 L1PB1 5432 + 5127 5430 148595 11 1 0 6 1 0 14 5 1 9 3 1 37 1 2 12 2 1 16 13 9 35 19 15 11 10 1 16 6 4 4 1 0 14 2 0 24 1 0 23 1 0 11 1 0 18 1 0 4 1 0 4 chain 7721 chr21 48129895 + 42789414 42789510 LTR56 451 - 136 232 172777 96 chain 76519 chr21 48129895 + 42792795 42793763 LTR5_Hs 974 - 0 974 45203 103 20 18 19 8 15 163 1 0 188 0 1 181 0 1 285 chain 31679 chr21 48129895 + 42793950 42794360 MER41A 554 + 17 428 81358 31 0 1 86 3 0 125 0 1 49 3 0 55 0 1 43 0 4 15 chain 54461 chr21 48129895 + 42794870 42795583 LTR17 781 - 0 781 56060 37 1 23 107 3 67 160 17 0 60 1 0 327 chain 39217 chr21 48129895 + 42797058 42797484 LTR7Y 441 - 0 426 70434 426 chain 23316 chr21 48129895 + 42807365 42807713 THE1D 372 - 10 372 114125 75 0 1 48 3 19 26 0 2 16 1 0 26 10 14 56 4 5 19 9 0 55 chain 19826 chr21 48129895 + 42824926 42825293 THE1B 368 - 0 367 127728 107 84 84 54 11 12 63 0 1 34 2 0 12 chain 13159 chr21 48129895 + 42833874 42834033 THE1B 368 + 209 368 147616 159 chain 13654 chr21 48129895 + 42834033 42834196 THE1B-int 1605 + 0 163 145765 163 chain 3047 chr21 48129895 + 42848763 42848795 MIR 256 + 76 108 224062 32 chain 4929 chr21 48129895 + 42849343 42849460 MER90 571 + 255 374 195946 26 49 51 42 chain 58305 chr21 48129895 + 42903305 42904373 MER4E1 777 - 25 777 53805 200 3 2 13 14 0 20 307 0 189 0 4 32 1 0 72 0 1 200 0 2 17 chain 19468 chr21 48129895 + 42924468 42924770 L1PA15 4387 + 3861 4180 128760 29 2 0 21 0 2 19 1 0 80 4 1 32 1 24 35 2 1 26 9 8 41 chain 30305 chr21 48129895 + 42926085 42926403 AluYb8 318 - 0 318 83901 318 chain 171820 chr21 48129895 + 43006750 43009506 L1PBa 3878 - 1352 3659 21842 269 0 1 46 0 5 345 1 2 4 1 0 156 3 0 84 18 16 20 0 2 84 0 3 24 6 11 467 0 1 275 0 1 117 471 4 141 13 20 112 42 41 5 0 1 35 2 0 15 chain 40249 chr21 48129895 + 43008670 43009133 LTR2 463 + 0 463 68943 463 chain 31593 chr21 48129895 + 43010262 43010664 MLT2A2 560 - 161 560 81508 46 0 2 53 4 0 114 2 1 183 chain 18485 chr21 48129895 + 43015140 43015403 L1PA8 5853 + 5595 5853 131546 13 2 0 72 1 0 8 1 0 72 8 7 86 chain 31134 chr21 48129895 + 43015855 43016198 L1PA2 6032 + 5685 6027 82277 25 1 0 317 chain 4203 chr21 48129895 + 43022423 43022474 MIR 256 + 73 124 204495 51 chain 19862 chr21 48129895 + 43028457 43028847 MSTA 426 - 21 426 127613 88 6 9 59 31 35 8 2 0 47 58 66 41 0 1 25 2 3 23 chain 8807 chr21 48129895 + 43038721 43038846 MLT1A 405 + 37 163 166612 54 5 6 66 chain 29738 chr21 48129895 + 43044545 43044899 THE1A 353 - 0 353 85701 242 1 0 111 chain 21152 chr21 48129895 + 43049150 43049522 MER83B 357 - 0 357 123366 123 9 20 59 40 24 10 13 7 63 1 0 4 0 1 13 0 1 15 5 0 17 chain 8619 chr21 48129895 + 43058958 43059060 LTR47A 437 - 0 102 167641 102 chain 27025 chr21 48129895 + 43120510 43120864 THE1A 353 + 0 353 96204 110 1 0 54 0 1 31 3 2 155 chain 39446 chr21 48129895 + 43134643 43135153 LTR6B 557 + 0 557 70099 22 0 28 22 0 15 272 0 1 124 15 17 33 0 1 22 chain 16277 chr21 48129895 + 43144001 43144295 THE1B 368 - 62 362 137534 57 67 72 60 5 6 105 chain 9547 chr21 48129895 + 43168002 43168126 MER85 139 - 0 134 162848 35 0 10 89 chain 13593 chr21 48129895 + 43172925 43173157 L1PA8 5853 + 5633 5853 146001 51 1 0 6 13 12 42 1 0 8 12 0 7 7 10 84 chain 47544 chr21 48129895 + 43216075 43216684 LTR71B 605 + 0 605 60816 142 6 0 10 0 1 198 1 2 252 chain 3946 chr21 48129895 + 43225928 43226010 HAL1-2a_MD 234 + 148 227 208198 36 6 0 8 2 8 19 3 0 8 chain 24045 chr21 48129895 + 43232036 43232316 AluYc3 301 - 9 290 110082 177 1 2 102 chain 4281 chr21 48129895 + 43303137 43303187 MIR 256 + 83 133 203459 50 chain 25401 chr21 48129895 + 43367274 43367565 AluSp 311 - 20 311 102678 291 chain 53142 chr21 48129895 + 43369635 43370256 L1PA6 6164 + 5541 6162 56930 164 0 2 404 0 1 39 3 0 11 chain 112539 chr21 48129895 + 43415224 43416820 THE1B-int 1605 + 0 1605 33524 268 0 2 128 63 89 142 6 8 69 0 1 6 2 1 203 61 41 6 0 1 11 1 0 197 1 0 155 2 1 10 6 7 249 1 0 4 0 1 5 chain 4981 chr21 48129895 + 43421169 43421223 MIR 256 - 97 151 195343 54 chain 9091 chr21 48129895 + 43445204 43445453 MLT2D 439 - 144 399 165114 29 117 125 47 1 0 5 1 0 49 chain 12322 chr21 48129895 + 43455994 43456155 THE1B 368 - 204 368 150930 122 0 5 24 2 0 13 chain 76319 chr21 48129895 + 43456688 43457650 L1PA8 5853 + 4873 5828 45304 136 2 0 555 1 0 45 2 0 49 0 1 19 2 1 8 5 4 9 0 1 39 2 1 19 2 1 67 chain 12719 chr21 48129895 + 43472346 43472675 L1PB1 5432 - 20 318 149379 8 1 0 13 1 0 17 53 47 19 14 5 7 3 0 15 1 0 44 1 0 16 8 7 47 2 0 9 16 11 9 1 0 24 chain 21512 chr21 48129895 + 43485641 43485929 AluSc5 308 - 6 297 122095 44 7 6 117 1 5 119 chain 22759 chr21 48129895 + 43487073 43487367 AluSg7 307 - 4 295 116785 8 5 0 163 0 1 78 6 7 34 chain 44457 chr21 48129895 + 43497402 43497931 LTR6B 557 - 0 557 63629 55 1 2 4 0 1 95 1 0 45 0 1 288 1 27 39 chain 9167 chr21 48129895 + 43555041 43555152 L1PA8 5853 - 0 111 164718 41 0 1 51 1 0 18 chain 27642 chr21 48129895 + 43568115 43568543 MER51E 476 - 16 476 94235 28 34 0 14 23 53 182 1 36 128 0 1 18 chain 100970 chr21 48129895 + 43599970 43601148 L1PA8 5853 - 0 1174 36516 92 2 1 19 2 1 48 1 0 12 1 0 72 2 0 46 1 0 555 0 3 325 chain 21897 chr21 48129895 + 43606116 43606454 THE1B 368 + 0 368 120639 40 0 15 120 1 0 23 8 6 10 16 28 35 9 15 76 chain 4226 chr21 48129895 + 43606480 43606526 MLT1A 405 - 42 88 204216 46 chain 26656 chr21 48129895 + 43636023 43636381 THE1B 368 + 0 368 97466 169 1 0 31 1 0 14 17 29 125 chain 21601 chr21 48129895 + 43647777 43648150 THE1D 372 - 7 372 121766 141 79 72 45 0 1 23 12 10 73 chain 24748 chr21 48129895 + 43690093 43690391 AluY 311 + 0 304 106181 64 1 6 62 0 1 171 chain 45356 chr21 48129895 + 43743718 43744270 MER41A 554 - 0 554 62649 190 0 1 309 0 1 53 chain 2954 chr21 48129895 + 43760939 43760978 Tigger3b 1229 - 212 261 226011 15 0 10 24 chain 4291 chr21 48129895 + 43837635 43837691 U6 107 - 41 96 203338 43 1 0 12 chain 4416 chr21 48129895 + 43855203 43855255 MIR 256 - 143 195 201723 52 chain 26752 chr21 48129895 + 43876303 43876729 MER1A 529 - 16 436 97155 42 16 8 36 1 0 14 2 0 17 4 7 182 38 40 74 chain 53174 chr21 48129895 + 43879024 43879681 PABL_A 660 - 0 660 56908 299 0 1 118 5 8 144 0 1 4 2 0 85 chain 2971 chr21 48129895 + 43940554 43940587 L1MC4 1079 - 342 375 225647 33 chain 3098 chr21 48129895 + 43942299 43942333 MLT1C 463 - 372 406 222947 34 chain 4102 chr21 48129895 + 43972704 43972753 MLT1J 494 - 209 258 205912 49 chain 60368 chr21 48129895 + 44022793 44023511 MER4E 760 - 29 742 52647 360 4 0 84 5 4 119 1 0 34 0 1 111 chain 28110 chr21 48129895 + 44025366 44025861 LTR10E 629 - 81 629 92608 18 1 0 18 56 57 13 20 16 47 22 21 6 0 1 4 1 0 17 2 1 113 0 60 140 1 0 16 chain 9210 chr21 48129895 + 44028113 44028257 MER4B 649 - 30 173 164504 39 26 25 79 chain 4784 chr21 48129895 + 44046680 44046796 MLT1A 405 + 116 263 197527 21 50 81 45 chain 14469 chr21 48129895 + 44148210 44148400 MER2 342 + 131 319 142987 164 2 0 24 chain 26095 chr21 48129895 + 44151062 44151366 AluSp 311 - 7 310 99645 184 1 0 119 chain 22082 chr21 48129895 + 44193644 44193922 AluY 311 + 9 294 119878 44 0 1 11 0 5 48 8 9 167 chain 65825 chr21 48129895 + 44198625 44199334 SVA_E 1901 + 1097 1885 50177 53 0 79 656 chain 7888 chr21 48129895 + 44200290 44200405 LTR38B 592 - 65 181 171747 76 0 2 8 1 0 17 1 0 5 0 1 7 chain 27825 chr21 48129895 + 44213606 44214558 MER4A1 472 - 27 472 93607 45 0 2 27 187 6 152 23 29 68 14 8 52 329 0 31 1 2 23 chain 40418 chr21 48129895 + 44215462 44215970 LTR10D 510 + 0 510 68707 64 14 19 80 0 1 182 5 0 35 0 1 128 chain 3493 chr21 48129895 + 44216102 44216139 MER83C 372 - 48 85 215485 37 chain 4140 chr21 48129895 + 44217422 44217477 MER65A 464 - 410 464 205366 4 1 0 50 chain 36710 chr21 48129895 + 44218928 44219398 MER4E1 777 - 303 777 73947 173 0 1 4 2 1 74 0 1 123 0 1 77 0 2 17 chain 3168 chr21 48129895 + 44219821 44219924 LTR10F 562 - 305 370 221597 6 0 1 19 4 8 6 43 0 25 chain 34211 chr21 48129895 + 44220961 44221404 LTR7 482 - 5 482 77334 153 0 10 34 1 31 134 21 15 100 chain 287620 chr21 48129895 + 44222632 44226239 HERVH-int 3825 - 0 3825 14181 377 42 43 782 3 0 205 5 4 5 0 1 55 0 4 58 1 2 33 0 8 91 0 1 55 5 10 89 0 4 218 0 1 96 0 3 210 1 0 37 11 1 209 22 7 314 0 7 116 1 0 42 0 207 45 10 12 106 2 3 31 1 0 50 0 2 229 3 5 47 chain 32514 chr21 48129895 + 44226253 44226688 LTR7 482 - 12 482 79997 144 1 11 20 0 31 149 21 15 100 chain 29439 chr21 48129895 + 44227531 44228000 LTR2B 499 - 0 491 86898 38 18 17 97 15 14 211 47 70 38 0 1 5 chain 25384 chr21 48129895 + 44231851 44232313 LTR21A 479 + 2 479 102764 31 30 0 18 9 47 159 20 0 51 10 38 76 34 33 24 chain 9617 chr21 48129895 + 44232395 44232508 MER4A1 472 - 71 184 162500 113 chain 40314 chr21 48129895 + 44232543 44233058 LTR10C 591 + 0 589 68861 13 1 0 93 0 72 75 8 7 240 8 10 30 0 1 29 0 1 18 chain 131025 chr21 48129895 + 44233291 44235467 MER4-int 2692 - 4 2615 27855 5 0 3 35 4 21 7 17 0 43 21 31 255 28 27 13 27 732 45 5 6 31 1 0 28 0 16 194 10 13 81 1 0 192 1 0 140 0 5 12 305 0 17 0 2 10 2 0 5 4 5 143 4 5 258 0 1 25 2 3 179 4 1 22 chain 62501 chr21 48129895 + 44241739 44242698 L1M1 2793 + 811 1766 51677 20 2 0 8 1 0 53 6 4 5 1 0 102 1 0 177 1 0 71 53 47 36 0 1 37 0 1 21 1 2 117 1 7 143 12 1 31 6 4 11 0 14 42 chain 71344 chr21 48129895 + 44247838 44249531 L1MA2 4263 - 150 1278 47772 9 1 0 48 7 0 91 77 84 75 13 10 134 1 0 77 5 1 63 0 1 42 14 16 125 0 2 14 592 33 51 2 0 104 0 1 4 2 1 142 chain 12320 chr21 48129895 + 44256049 44256267 MER30 238 - 0 238 150940 36 18 22 55 4 18 74 17 19 14 chain 87273 chr21 48129895 + 44294185 44295235 MER11C 1089 + 0 1073 40661 247 0 9 57 0 4 50 0 1 195 21 23 103 1 5 43 0 1 13 0 1 113 0 1 207 chain 181375 chr21 48129895 + 44341241 44344979 HERVH48-int 3304 - 59 3204 20861 26 103 77 59 60 44 68 10 7 41 1 0 6 1 0 4 1 0 16 25 16 6 0 1 18 2 0 7 2 0 6 3 0 28 248 158 18 4 2 45 1 0 10 9 8 4 1 0 89 1 0 4 1 2 131 1 0 42 1 0 8 1 0 9 4 3 70 2 0 18 1 0 11 0 1 87 320 4 40 0 1 22 6 0 77 6 5 131 4 8 148 1 0 80 1 0 9 1 0 221 1 0 6 1 0 11 2 1 5 1 0 116 17 10 5 2 0 16 1 0 26 2 0 14 7 6 16 1 0 4 2 0 22 2 0 3 3 0 32 2 0 13 1 0 21 1 0 11 3 0 118 25 17 101 1 0 39 5 3 65 8 5 14 5 1 19 20 14 11 1 16 28 3 1 10 1 0 75 16 10 10 6 0 13 1 0 7 0 3 26 5 4 33 1 0 5 6 2 65 16 10 9 1 0 8 26 12 36 1 0 22 2 0 11 9 6 11 2 0 8 3 0 8 2 0 12 2 0 7 6 2 8 2 0 7 7 3 6 2 0 10 chain 3389 chr21 48129895 + 44346023 44346070 MER4A1 472 + 409 455 217320 32 2 1 13 chain 35626 chr21 48129895 + 44356015 44356538 Harlequin-int 5206 + 4616 5122 75375 145 35 9 144 26 35 173 chain 48912 chr21 48129895 + 44356554 44357110 LTR6B 557 + 0 557 59801 273 4 6 122 1 0 156 chain 35249 chr21 48129895 + 44357705 44358172 MER4A1 472 + 0 462 75861 22 12 4 239 0 1 133 1 3 60 chain 9716 chr21 48129895 + 44359965 44360101 MER41A 554 - 0 141 162007 73 7 12 56 chain 14940 chr21 48129895 + 44361351 44361542 MER41A 554 + 0 190 141507 68 4 3 119 chain 396029 chr21 48129895 + 44363566 44368420 Harlequin-int 5206 - 243 5081 10241 698 26 11 120 0 1 324 0 2 5 9 6 115 4 0 101 0 2 908 0 1 120 7 9 43 0 1 229 0 16 166 1 0 303 6 7 482 2 1 118 10 8 159 1 0 525 3 1 107 11 0 223 5 1 6 0 2 17 chain 41214 chr21 48129895 + 44375530 44376015 HERVE-int 4064 - 0 486 67634 95 1 3 370 1 0 18 chain 26768 chr21 48129895 + 44376948 44377431 MER4A 717 + 0 462 97093 30 2 36 37 52 49 65 0 1 55 0 2 53 55 0 134 chain 12483 chr21 48129895 + 44388530 44388689 MER41A 554 - 377 531 150327 38 5 0 116 chain 38289 chr21 48129895 + 44391219 44391878 MER41B 635 + 11 627 71724 81 1 0 31 0 4 41 0 6 202 0 41 8 31 0 20 110 44 58 0 5 71 1 0 4 chain 118890 chr21 48129895 + 44418507 44420375 THE1B-int 1605 - 5 1605 31458 24 7 9 235 1 0 513 4 8 34 0 1 7 1 0 246 308 0 62 4 29 94 0 2 69 0 2 32 8 12 204 0 2 15 chain 24970 chr21 48129895 + 44420389 44420731 THE1B 368 - 14 365 104957 160 26 22 23 2 0 94 0 15 37 chain 23975 chr21 48129895 + 44451978 44452269 AluSp 311 - 19 311 110477 180 1 2 110 chain 6891 chr21 48129895 + 44452648 44452730 FAM 185 + 69 151 178258 82 chain 5842 chr21 48129895 + 44488124 44488195 MER92B 628 + 163 234 186753 71 chain 24520 chr21 48129895 + 44498491 44498776 AluSc5 308 + 8 293 107440 285 chain 25635 chr21 48129895 + 44516783 44517083 AluSg7 307 - 5 306 101563 175 0 1 125 chain 3138 chr21 48129895 + 44536655 44536688 MER34C 514 + 131 164 222221 33 chain 76883 chr21 48129895 + 44536814 44537807 LTR13 1007 - 0 1007 45040 31 3 1 274 0 7 159 6 7 15 12 21 106 4 5 298 0 3 6 6 1 73 chain 233129 chr21 48129895 + 44539313 44541941 L1PA5 6144 - 0 2609 17134 227 0 1 182 5 10 1379 0 4 427 0 1 63 36 6 309 chain 89425 chr21 48129895 + 44543261 44544299 L1P1 4361 + 621 3534 39834 505 0 1875 533 chain 5321 chr21 48129895 + 44547437 44547501 LTR23 429 + 9 73 191811 64 chain 14855 chr21 48129895 + 44551801 44552011 LTR24B 570 - 0 217 141774 67 12 13 110 0 7 4 1 0 16 chain 29909 chr21 48129895 + 44553457 44553773 AluYb8 318 - 2 318 85071 316 chain 47373 chr21 48129895 + 44553909 44554513 PABL_A 660 + 0 607 60917 422 0 3 161 1 0 4 1 2 15 chain 8026 chr21 48129895 + 44559558 44559681 MER6 865 - 0 128 170893 13 17 22 93 chain 3300 chr21 48129895 + 44567038 44567097 L1MB3 1562 + 1490 1549 218974 13 5 6 14 1 0 26 chain 74490 chr21 48129895 + 44567239 44568199 LTR5_Hs 974 - 0 974 46281 103 20 18 19 8 15 163 1 0 188 0 1 177 0 1 161 5 13 115 chain 13996 chr21 48129895 + 44620638 44620889 MLT1B 390 - 2 255 144591 14 35 34 96 6 17 36 6 0 12 2 0 44 chain 25995 chr21 48129895 + 44622544 44622842 AluYk4 311 - 5 303 100038 298 chain 7939 chr21 48129895 + 44772780 44772884 MER57F 435 - 207 317 171391 24 1 7 79 chain 16691 chr21 48129895 + 44825161 44825497 L1PB1 5432 + 5114 5418 136430 22 1 0 10 1 0 10 10 6 7 2 0 51 2 1 15 1 0 44 1 0 16 3 0 6 19 9 16 3 1 4 1 0 14 2 0 24 1 0 20 6 5 9 1 0 14 chain 4971 chr21 48129895 + 44874263 44874318 MLT1C 463 + 57 112 195460 55 chain 3380 chr21 48129895 + 44917474 44917511 L1MB3 1562 + 1267 1304 217469 37 chain 38928 chr21 48129895 + 44927024 44927499 LTR15 485 + 0 485 70832 53 0 4 92 0 2 56 0 5 269 1 0 4 chain 48144 chr21 48129895 + 44938493 44940092 MER4A 717 + 0 717 60366 59 581 0 18 0 8 43 3 0 23 0 23 168 1 0 4 312 0 45 7 5 92 1 0 4 2 0 5 35 25 189 1 0 6 chain 55432 chr21 48129895 + 44945351 44946254 MER4D1 891 + 0 891 55448 101 38 0 102 17 30 139 1 0 21 12 22 14 1 0 21 0 3 93 17 32 82 3 0 6 53 44 111 1 0 70 chain 52503 chr21 48129895 + 44950461 44951161 MER4E1 777 + 0 777 57303 121 0 4 204 0 19 42 0 1 26 0 1 4 1 0 14 0 1 43 0 18 43 3 0 6 14 21 85 4 5 27 0 27 56 0 2 7 chain 58196 chr21 48129895 + 44958820 44959586 MER4E 760 + 0 760 53867 23 2 1 345 0 2 61 1 0 115 1 2 98 6 5 37 6 0 71 chain 25694 chr21 48129895 + 44976502 44976867 THE1C 375 - 0 353 101308 18 3 0 4 1 3 42 15 0 104 0 3 14 0 1 164 chain 24551 chr21 48129895 + 44983550 44983908 THE1B 368 - 0 368 107247 49 5 13 127 8 7 115 12 17 25 2 0 15 chain 33504 chr21 48129895 + 44986082 44986513 THE1B-int 1605 - 1176 1605 78405 159 6 1 235 9 10 7 0 2 15 chain 33837 chr21 48129895 + 44997531 44997987 LTR7B 505 + 0 492 77878 208 28 49 150 0 1 5 2 1 20 3 20 26 2 0 12 chain 40277 chr21 48129895 + 45099453 45100090 L1PB1 5432 - 1393 1981 68906 204 8 0 97 59 11 71 6 6 56 0 1 65 5 7 42 4 8 20 chain 22236 chr21 48129895 + 45103592 45103871 AluSx 319 + 14 300 119182 93 0 1 159 6 12 21 chain 46895 chr21 48129895 + 45118400 45118954 LTR14 556 + 0 556 61312 141 0 2 413 chain 24272 chr21 48129895 + 45131331 45131618 AluY 311 + 14 304 108833 231 1 0 23 0 4 32 chain 22351 chr21 48129895 + 45131802 45132096 AluSp 311 + 11 299 118696 94 0 2 21 6 0 128 5 3 40 chain 45861 chr21 48129895 + 45158328 45159298 LTR14 556 + 0 556 62167 461 414 0 95 chain 4307 chr21 48129895 + 45171474 45171577 MLT1A1 405 - 75 180 203129 38 44 46 21 chain 29276 chr21 48129895 + 45191482 45191852 THE1C 375 - 0 375 87664 25 1 0 89 0 2 65 0 1 6 1 0 6 0 1 117 0 3 60 chain 11189 chr21 48129895 + 45201848 45202121 LTR56 451 + 37 324 155471 40 116 128 99 0 2 18 chain 45195 chr21 48129895 + 45203794 45204342 MER41A 554 - 0 552 62832 132 10 14 406 chain 32507 chr21 48129895 + 45204560 45204946 MLT2A1 477 + 1 385 80011 110 0 1 57 4 1 215 chain 4486 chr21 48129895 + 45240339 45240440 MLT1C 463 + 70 163 200960 35 27 18 17 1 0 4 0 2 17 chain 129669 chr21 48129895 + 45241495 45242927 SVA_B 1603 + 49 1603 28166 767 0 40 52 0 82 613 chain 14927 chr21 48129895 + 45270097 45270293 MER4A1 472 + 0 188 141556 44 9 0 110 0 1 33 chain 19453 chr21 48129895 + 45270297 45270518 AluSz 310 + 5 226 128808 221 chain 24931 chr21 48129895 + 45272730 45273018 AluSp 311 - 20 311 105157 12 0 3 276 chain 40997 chr21 48129895 + 45279511 45280057 MER41A 554 - 0 554 67912 63 3 1 16 0 5 14 0 1 23 1 2 9 1 0 23 0 1 30 0 1 98 1 0 211 0 3 53 chain 35038 chr21 48129895 + 45312214 45312655 Tigger1 2417 - 978 1420 76138 147 1 0 105 2 1 147 0 3 39 chain 99196 chr21 48129895 + 45316837 45318015 SVA_A 1864 - 0 1854 36973 527 20 230 203 0 452 254 0 8 85 0 11 68 5 1 7 1 0 8 chain 26007 chr21 48129895 + 45412794 45413088 AluYk4 311 + 0 294 99988 294 chain 24439 chr21 48129895 + 45450349 45450636 AluSp 311 - 13 299 107867 92 0 1 85 2 0 108 chain 12422 chr21 48129895 + 45520556 45520753 HSMAR2 1300 + 1 216 150556 25 6 8 28 3 4 17 11 26 107 chain 25191 chr21 48129895 + 45552643 45552934 AluSp 311 + 10 301 103792 291 chain 12488 chr21 48129895 + 45611284 45611434 L1PA10 4194 - 2832 2982 150305 150 chain 22792 chr21 48129895 + 45625005 45625295 AluSg7 307 + 13 302 116623 119 1 0 8 0 1 63 9 8 90 chain 9260 chr21 48129895 + 45634529 45634637 MER41B 635 + 257 365 164264 108 chain 27466 chr21 48129895 + 45677290 45677579 AluYa5 310 + 8 297 94755 289 chain 24787 chr21 48129895 + 45690352 45690642 AluSp 311 - 19 307 105959 160 2 0 128 chain 25142 chr21 48129895 + 45700915 45701204 AluY 311 + 11 297 104048 111 0 1 167 4 0 7 chain 75195 chr21 48129895 + 45702742 45703660 LTR5_Hs 974 - 0 974 45929 65 0 4 10 0 2 22 8 7 33 5 11 404 0 1 301 0 41 23 6 9 41 chain 14261 chr21 48129895 + 45761039 45761224 MER4A 717 - 0 184 143676 6 1 0 6 0 1 130 1 0 41 chain 7323 chr21 48129895 + 45762822 45762940 MER4E1 777 + 0 115 175284 18 5 0 25 0 3 5 7 8 50 2 0 6 chain 56533 chr21 48129895 + 45762953 45763983 MER4E1 777 - 8 768 54834 218 1 9 45 0 4 69 291 0 23 0 1 197 1 2 43 0 5 126 0 2 16 chain 27663 chr21 48129895 + 45766192 45766593 LTR7 482 + 0 474 94172 86 0 50 22 26 6 47 1 12 41 0 31 10 0 1 168 chain 7987 chr21 48129895 + 45778673 45779153 LTR12 884 - 11 711 171131 12 6 7 70 168 489 17 3 4 9 24 0 18 32 25 15 47 0 8 24 0 15 1 0 11 chain 8118 chr21 48129895 + 45779488 45779587 LTR12_ 688 - 451 550 170392 99 chain 3041 chr21 48129895 + 45839406 45839508 HAL1-2a_MD 234 - 37 234 224196 18 0 124 8 4 13 25 38 0 9 chain 29901 chr21 48129895 + 45850296 45850611 AluYb8 318 - 3 318 85093 315 chain 56895 chr21 48129895 + 45891083 45891864 MER4E1 777 + 0 777 54598 17 14 0 30 25 13 34 0 1 116 1 0 4 0 6 106 1 5 35 0 1 77 1 3 15 0 1 74 0 8 231 chain 89073 chr21 48129895 + 45898979 45900001 LTR13 1007 - 0 1007 39978 577 18 3 427 chain 10156 chr21 48129895 + 45901072 45901327 THE1D 372 - 0 265 159821 84 45 50 14 1 0 31 53 59 27 chain 34616 chr21 48129895 + 45902452 45902899 LTR71B 605 + 20 486 76734 108 3 20 100 0 1 102 1 2 133 chain 184401 chr21 48129895 + 45906139 45910108 HUERS-P2-int 2744 + 17 2742 20551 14 10 5 16 0 2 32 2 0 5 1 0 53 1 0 19 34 27 21 3 4 7 1 0 41 4 1 5 1 0 8 69 50 55 9 0 51 1 0 8 2 0 22 1184 1 32 0 1 29 12 9 218 2 0 291 0 14 132 0 9 107 2 0 30 0 1 264 0 1 47 1 0 90 2 0 242 5 23 177 1 0 71 21 3 109 5 6 46 1 0 23 1 0 72 2 0 31 10 0 21 0 1 14 3 2 10 18 15 11 1 0 39 10 7 27 1 0 9 2 0 5 2 0 11 2 0 28 chain 105355 chr21 48129895 + 45906649 45907818 L1PA3long 6157 - 0 1177 35411 139 0 3 86 0 2 549 1 0 64 0 4 330 chain 23117 chr21 48129895 + 45997719 45998063 THE1B 368 + 0 368 115052 44 6 21 106 1 0 27 35 45 125 chain 176666 chr21 48129895 + 46006598 46009019 L1PB1 5432 + 3125 5420 21285 35 10 21 41 0 5 39 0 2 465 0 3 161 0 8 46 5 6 140 0 5 275 0 1 250 4 0 472 0 3 11 129 0 16 5 4 12 1 0 11 4 0 12 2 0 51 2 1 16 1 0 43 1 0 17 13 0 30 3 1 4 1 0 16 2 0 22 1 0 14 9 8 12 1 0 16 chain 92800 chr21 48129895 + 46029989 46031112 THE1A-int 1579 + 409 1573 38712 260 1 6 27 0 38 575 3 1 257 chain 22977 chr21 48129895 + 46080926 46081220 AluY 311 + 0 304 115729 53 4 20 35 0 1 23 0 1 74 7 1 57 2 0 39 chain 31858 chr21 48129895 + 46081478 46081898 MSTA 426 - 20 426 81084 120 9 3 77 8 0 206 chain 22733 chr21 48129895 + 46089069 46089362 AluSc 308 + 10 298 116906 246 1 2 29 6 0 11 chain 9773 chr21 48129895 + 46094057 46094346 L1MA4A 3247 + 699 987 161730 83 3 0 5 148 150 50 chain 30834 chr21 48129895 + 46109670 46110040 MLT2A1 477 - 102 476 82802 185 1 0 17 0 4 57 0 1 110 chain 73771 chr21 48129895 + 46124935 46125982 MER11C 1089 + 0 1063 46637 247 0 9 34 23 27 69 1 0 147 67 66 91 1 5 4 1 0 38 0 1 127 0 1 54 1 0 117 0 1 25 chain 24033 chr21 48129895 + 46148272 46148545 AluSp 311 + 36 309 110150 273 chain 8324 chr21 48129895 + 46162588 46162742 MER61-int 3695 + 9 151 169261 13 11 1 23 3 0 19 15 16 70 chain 8436 chr21 48129895 + 46166798 46166897 MER4A1 472 + 0 99 168648 99 chain 44068 chr21 48129895 + 46166897 46167413 MER9a3 513 - 0 513 64137 137 5 0 41 0 2 77 1 0 242 0 1 13 chain 4044 chr21 48129895 + 46167959 46168009 MER49 923 - 632 682 206738 50 chain 29796 chr21 48129895 + 46176195 46176614 LTR3B 427 - 7 427 85449 51 7 17 11 15 9 29 9 6 297 chain 28245 chr21 48129895 + 46217349 46217658 AluYg6 310 + 0 309 92136 309 chain 10911 chr21 48129895 + 46224535 46224683 MSTA 426 + 258 426 156546 35 4 24 109 chain 166292 chr21 48129895 + 46243963 46245849 SVA_D 2077 + 6 2061 22485 19 5 0 887 0 186 181 33 20 8 0 1 80 0 1 4 9 8 660 chain 1945 chr21 48129895 + 46245055 46245078 SVA_D 2077 + 924 947 103301 23 chain 9203 chr21 48129895 + 46250574 46250685 MER51A 677 - 566 677 164543 111 chain 80158 chr21 48129895 + 46252305 46253230 LTR13A 966 + 22 966 43527 54 0 4 419 0 5 62 0 10 390 chain 25871 chr21 48129895 + 46263878 46264188 AluY 311 + 0 299 100560 118 5 0 59 0 1 115 7 0 6 chain 40030 chr21 48129895 + 46297872 46298469 LTR10E 629 - 16 629 69278 26 42 39 14 1 0 158 1 0 52 1 0 25 3 28 97 19 16 158 chain 18670 chr21 48129895 + 46328338 46328564 LTR2C 499 + 191 417 131030 226 chain 8999 chr21 48129895 + 46466212 46466490 L1MC1 2226 + 1933 2181 165601 46 3 0 16 2 0 50 125 101 6 1 0 29 chain 22458 chr21 48129895 + 46475495 46475746 L1PA4 6152 + 5901 6152 118209 251 chain 3985 chr21 48129895 + 46481899 46481945 Ricksha_c 1012 + 94 140 207629 46 chain 3343 chr21 48129895 + 46502202 46502240 MER47B 469 - 58 96 218185 38 chain 2895 chr21 48129895 + 46510369 46510402 MER63B 433 - 47 80 227117 33 chain 4481 chr21 48129895 + 46588387 46588530 L1MD 993 - 130 271 200999 23 72 70 48 chain 23317 chr21 48129895 + 46608748 46609093 THE1B 368 - 12 367 114116 7 0 2 98 36 47 8 2 0 25 1 0 168 chain 15976 chr21 48129895 + 46639975 46640188 HSMAR2 1300 - 1080 1295 138428 170 2 4 41 chain 157399 chr21 48129895 + 46687926 46689722 SVA_F 1814 + 0 1812 23678 697 0 80 110 0 1 60 2 17 175 78 0 616 1 0 42 1 0 14 chain 7317 chr21 48129895 + 46688970 46689048 SVA_F 1814 + 1013 1091 128620 78 chain 19996 chr21 48129895 + 46717330 46717710 MSTA 426 + 0 408 127154 123 29 33 48 3 0 5 7 13 14 42 40 18 0 1 4 7 29 80 chain 1573 chr21 48129895 + 46733550 46733634 L1PA10 4194 + 2863 2948 91890 34 0 1 50 chain 82886 chr21 48129895 + 46733721 46734746 L1PA10 4194 - 362 1388 42384 215 0 1 35 3 1 195 0 1 254 2 0 245 0 3 76 chain 5655 chr21 48129895 + 46734760 46735062 L1PA10 4194 + 3863 4161 91890 254 3 0 33 1 0 11 chain 3435 chr21 48129895 + 46737306 46737347 MER5A1 166 - 40 81 216493 41 chain 6843 chr21 48129895 + 46811372 46811455 THE1B 368 - 269 352 178642 83 chain 12087 chr21 48129895 + 46820573 46820717 LTR71B 605 + 0 144 151848 144 chain 38015 chr21 48129895 + 46922916 46923334 L1PA3long 6157 - 430 848 72109 418 chain 33831 chr21 48129895 + 46923334 46923713 L1PA3long 6157 + 5781 6157 77890 371 3 0 5 chain 25976 chr21 48129895 + 47013372 47013698 THE1A 353 + 0 353 100114 110 1 0 102 1 29 112 chain 42587 chr21 48129895 + 47041870 47042357 L1PA5 6144 + 5638 6125 65918 487 chain 152945 chr21 48129895 + 47045986 47048176 L1PA8A 6298 - 7 1881 24239 577 1 2 139 3 1 74 6 9 377 1 0 4 1 2 268 318 0 421 chain 46962 chr21 48129895 + 47048178 47048766 L1PA8A 6298 + 3797 4398 61241 23 0 1 4 3 11 42 5 6 187 0 1 58 0 1 203 1 2 62 chain 19194 chr21 48129895 + 47066378 47066652 MSTC 436 - 12 416 129541 104 0 118 45 0 16 21 2 1 59 5 2 38 chain 23565 chr21 48129895 + 47068941 47069289 THE1B 368 - 0 368 112770 124 38 44 112 7 6 23 0 15 44 chain 88797 chr21 48129895 + 47075515 47076568 L1PA7 6471 + 5402 6470 40084 221 0 5 32 0 11 639 1 2 150 2 0 8 chain 5804 chr21 48129895 + 47082335 47082400 L1PB4 2604 - 891 956 187100 65 chain 67910 chr21 48129895 + 47082400 47083395 LTR13 1007 + 0 1007 49280 73 6 1 6 0 3 242 52 65 226 13 13 57 28 30 96 5 6 156 2 0 33 chain 28582 chr21 48129895 + 47084530 47084840 L1PA2 6032 - 1 310 90813 157 1 0 152 chain 64420 chr21 48129895 + 47098253 47099495 Tigger1 2417 + 1467 2377 50833 140 0 6 11 1 2 193 7 5 80 6 0 69 15 16 168 0 2 49 16 0 7 319 0 16 1 0 46 0 2 98 chain 22867 chr21 48129895 + 47103577 47103860 AluY 311 + 19 305 116246 113 7 8 126 0 2 37 chain 8249 chr21 48129895 + 47105039 47105232 L1MB3 1562 + 1321 1480 169688 30 1 0 44 0 2 10 58 26 6 2 0 29 1 0 12 chain 24324 chr21 48129895 + 47119460 47119823 THE1B 368 - 0 368 108525 75 4 0 31 1 0 19 35 45 198 chain 10138 chr21 48129895 + 47119833 47119952 THE1B-int 1605 - 11 130 159913 119 chain 79716 chr21 48129895 + 47122332 47123424 Tigger1 2417 - 17 1125 43729 44 0 5 57 1 6 9 0 2 43 1 0 122 3 0 123 15 16 69 6 0 80 7 5 194 0 7 276 0 8 42 chain 36242 chr21 48129895 + 47130059 47130478 L1PA4 6152 - 0 408 74566 12 9 0 109 2 0 287 chain 22157 chr21 48129895 + 47139349 47139718 THE1D 372 + 0 372 119562 52 42 27 60 0 1 26 32 49 157 chain 29365 chr21 48129895 + 47140007 47140382 L1PA8 5853 - 10 396 87221 82 2 1 7 0 17 48 1 0 9 2 1 70 2 0 46 1 0 105 chain 24550 chr21 48129895 + 47184023 47184326 AluSp 311 - 5 302 107252 25 12 6 266 chain 147596 chr21 48129895 + 47204395 47206040 SVA_D 2077 + 55 2056 24942 505 0 40 125 0 3 33 3 0 140 2 0 17 0 263 152 0 1 51 0 53 279 0 1 338 chain 181821 chr21 48129895 + 47226965 47229104 L1PA7 6471 + 4321 6461 20803 34 0 1 318 0 4 348 19 1 68 0 6 308 0 1 9 0 2 193 0 3 81 1 3 760 chain 8263 chr21 48129895 + 47232108 47232210 MER4D0 881 - 13 115 169610 102 chain 25105 chr21 48129895 + 47252624 47252991 THE1D 372 - 0 372 104260 179 8 7 12 1 0 7 0 6 26 1 5 64 1 5 11 9 0 33 0 2 15 chain 24807 chr21 48129895 + 47260084 47260390 AluY 311 + 0 302 105850 123 8 4 175 chain 55481 chr21 48129895 + 47276583 47277325 MER4E1 777 - 7 777 55424 119 0 1 99 3 11 36 7 11 29 0 1 290 6 10 19 0 6 20 1 3 88 0 2 25 chain 20937 chr21 48129895 + 47278634 47278970 THE1B 368 + 0 338 124161 168 74 76 94 chain 31648 chr21 48129895 + 47372269 47372626 L1PA4 6152 - 1 365 81407 202 0 7 155 chain 35228 chr21 48129895 + 47372941 47373423 LTR10D 510 - 0 510 75887 41 0 4 125 6 0 38 0 5 25 1 0 1 0 2 32 0 6 128 23 34 14 0 7 48 chain 20348 chr21 48129895 + 47380413 47380757 THE1B 368 - 19 368 126073 37 7 6 36 1 2 28 1 0 10 1 0 16 0 1 4 1 0 4 8 15 21 1 0 44 18 17 42 0 2 64 chain 102423 chr21 48129895 + 47380780 47382154 THE1B-int 1605 - 30 1605 36159 106 1 142 28 3 0 241 0 6 197 0 8 91 6 0 250 5 7 35 14 78 152 5 0 31 5 0 187 4 3 13 chain 22597 chr21 48129895 + 47382154 47382863 THE1B 368 - 0 368 117599 56 7 6 66 1 0 10 1 0 16 0 1 4 6 12 28 1 0 35 367 23 111 chain 74824 chr21 48129895 + 47395572 47396620 MER11C 1089 - 26 1089 46098 143 1 0 54 0 1 127 0 1 38 6 9 88 71 70 146 1 0 69 23 27 35 0 9 246 chain 19403 chr21 48129895 + 47463813 47464075 AluY 311 + 20 297 128936 25 9 30 58 9 2 21 0 1 140 chain 48825 chr21 48129895 + 47495118 47495729 L1PA10 4194 + 3546 4161 59858 68 0 1 387 0 11 62 8 4 36 4 1 34 1 0 11 chain 3239 chr21 48129895 + 47511314 47511376 HAL1-2a_MD 234 - 18 234 220262 20 6 73 18 0 87 18 chain 61290 chr21 48129895 + 47527153 47527918 MER4E1 777 + 0 770 52212 24 0 1 71 0 1 36 1 2 328 0 1 75 6 7 224 chain 3138 chr21 48129895 + 47529081 47529134 MER52D 1964 - 705 744 222223 18 14 0 21 chain 38706 chr21 48129895 + 47562115 47562959 LTR12 884 - 136 883 71143 38 1 0 17 212 0 47 15 14 157 33 32 65 2 0 111 0 89 16 27 56 13 1 3 89 chain 189759 chr21 48129895 + 47594274 47596825 L1PA13 3608 + 914 3488 20079 131 10 12 241 0 2 227 14 15 483 0 4 5 2 1 216 0 1 315 0 4 40 0 1 152 14 35 5 1 0 178 9 12 106 12 9 23 1 0 28 1 0 63 0 4 46 2 1 5 1 0 21 1 0 36 9 8 18 8 7 22 1 0 5 2 0 48 2 0 4 2 0 19 1 0 21 chain 25204 chr21 48129895 + 47629974 47630270 AluSg7 307 - 3 298 103719 172 1 0 123 chain 85922 chr21 48129895 + 47643418 47644407 LTR13 1007 + 0 1007 41186 108 1 7 185 5 4 226 0 4 165 0 4 205 0 5 94 chain 8794 chr21 48129895 + 47644753 47644880 AluSg 306 + 11 131 166675 36 17 10 74 chain 6143 chr21 48129895 + 47644929 47645002 LTR13 1007 + 0 73 184049 73 chain 61173 chr21 48129895 + 47645004 47645750 LTR13 1007 + 73 815 52263 291 5 0 17 4 5 242 2 1 70 0 1 115 chain 14292 chr21 48129895 + 47645750 47645943 LTR13 1007 + 816 1007 143582 159 7 5 27 chain 28068 chr21 48129895 + 47682599 47682906 AluYf4 310 + 0 307 92760 307 chain 3071 chr21 48129895 + 47683746 47683780 L1M3 994 + 334 368 223535 34 chain 3599 chr21 48129895 + 47729392 47729438 MSTC 436 + 385 436 213652 22 0 5 24 chain 71577 chr21 48129895 + 47868445 47869710 MER11A 1151 - 0 1151 47668 64 1 0 11 0 8 13 0 2 191 5 28 28 11 10 121 1 0 116 5 4 12 0 7 92 0 1 54 0 1 10 0 3 32 1 0 17 258 0 26 12 8 49 0 2 6 0 95 30 20 31 79 chain 12598 chr21 48129895 + 47916380 47916562 MER30 238 - 0 198 149844 49 8 5 54 4 23 67 chain 4942 chr21 48129895 + 47926333 47926392 L1ME1 1623 - 347 406 195776 59 chain 54006 chr21 48129895 + 47939347 47941857 MER41-int 2638 - 6 2246 56361 176 15 23 68 0 2 68 9 12 55 1 3 34 1681 1382 72 0 15 79 0 2 64 7 6 12 0 2 98 1 0 6 2 0 34 1 0 27 chain 294985 chr21 48129895 + 47997492 48001826 L1PA10 4194 - 47 4019 13708 31 18 15 19 2 0 283 1 0 5 0 3 85 326 0 118 0 1 183 11 12 159 1 0 498 1 2 32 1 8 36 1 0 27 1 0 400 0 4 110 1 0 5 1 2 279 0 4 58 0 1 7 1 0 50 2 3 320 0 1 114 0 1 625 2 1 161 2 0 8 2 1 65 0 1 6 1 0 7 6 1 15 20 24 21 2 0 13 54 28 8 1 0 15 2 0 21 22 18 12 30 21 9 1 0 4 1 0 11 chain 393873 chr21 48129895 + 48005708 48011149 L1PB1 5432 + 31 5295 10327 375 3 4 490 8 9 338 0 4 158 14 0 13 0 1 86 0 5 8 0 71 21 0 1 241 300 0 166 0 3 164 0 1 57 1 0 11 1 2 238 8 0 432 10 14 251 0 2 112 0 22 398 1 10 16 0 3 234 6 1 164 0 1 84 0 1 184 0 8 72 1 6 14 0 4 19 1 0 78 0 2 24 0 10 141 2 10 124 4 1 102 18 17 39 6 5 14 0 1 6 12 10 12 1 0 11 6 2 8 2 0 53 3 2 15 2 1 37 6 5 15 chain 116391 chr21 48129895 + 48011532 48013099 THE1B-int 1605 + 0 1605 32315 13 1 0 100 0 1 156 0 3 155 3 28 204 27 30 72 42 44 711 1 6 82 chain 17359 chr21 48129895 + 48013659 48013922 LTR28 1034 + 84 333 134632 19 12 8 113 26 16 93 chain 111776 chr21 48129895 + 48034367 48035734 L1PA13 3608 - 667 2041 33731 525 1 0 312 0 4 135 0 4 394 chain 29099 chr21 48129895 + 48036967 48037338 THE1C 375 - 0 375 88557 25 1 0 230 3 0 12 1 0 54 0 9 45 chain 25537 chr21 48129895 + 48047113 48047490 THE1C 375 - 2 375 102071 125 7 1 10 22 24 28 1 2 15 1 0 168 chain 8468 chr21 48129895 + 48048062 48048290 MLT1B 390 + 150 366 168474 24 112 100 92 chain 7810 chr21 48129895 + 48050079 48050174 L1PA7 6471 - 1 96 172251 95 chain 65978 chr21 48129895 + 48050719 48051522 L1PA7 6471 - 2 808 50110 10 3 0 53 0 4 204 0 1 65 0 1 126 2 0 294 0 1 7 4 5 35 chain 56518 chr21 48129895 + 48088680 48089299 L1PA3long 6157 - 1 620 54842 619 chain 108586 chr21 48129895 + 48096324 48097614 L1PA7 6471 - 2 1293 34541 11 2 0 272 0 1 53 0 1 420 2 0 90 2 0 5 5 6 136 0 5 265 1 0 26 chain 4921 chr21 48129895 + 48108923 48109094 MER31-int 1156 - 867 941 196045 63 97 0 11 chain 3293 chr21 48129895 + 48114356 48114391 MER72 723 - 8 43 219110 35 chain 28567 chr21 48129895 + 48117162 48117466 AluYb8 318 + 4 308 90882 304 chain 84679 chr1_gl000192_random 547496 + 5413 6401 LTR5_Hs 974 - 0 974 41648 121 10 7 17 14 0 55 0 1 485 1 3 285 chain 3075 chr1_gl000192_random 547496 + 29526 29631 MLT1H1 527 + 317 421 223451 29 56 55 20 chain 10602 chr1_gl000192_random 547496 + 35381 35564 L1MA1 4479 + 4021 4190 157811 57 1 0 31 3 0 33 1 0 9 30 21 18 chain 66856 chr1_gl000192_random 547496 + 46443 47443 LTR5_Hs 974 + 0 974 49706 216 6 7 170 16 0 22 0 1 42 0 4 59 0 2 18 16 17 100 1 2 9 15 16 32 0 1 58 7 7 34 13 15 11 25 1 130 chain 3129 chr1_gl000192_random 547496 + 77802 77863 MIRb 242 + 119 179 222362 20 14 13 27 chain 383064 chr1_gl000192_random 547496 + 82127 86241 L1PA2 6032 - 0 4117 10661 149 1 0 1653 0 4 2311 chain 62628 chr1_gl000192_random 547496 + 108827 109685 THE1B-int 1605 + 0 893 51619 17 4 0 7 2 3 156 0 3 27 8 11 76 5 6 124 0 25 43 0 5 191 1 3 9 3 1 176 0 1 9 chain 4838 chr1_gl000192_random 547496 + 112789 112884 MER5A1 166 - 32 132 196909 10 1 2 31 20 24 33 chain 22827 chr1_gl000192_random 547496 + 117072 117413 THE1B 368 + 1 353 116462 168 1 0 29 0 3 8 20 24 7 1 0 53 13 19 41 chain 413649 chr1_gl000192_random 547496 + 149406 154864 L1PB1 5432 - 12 5400 9708 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 4 3 1 15 9 1 15 6 4 11 1 0 44 1 0 16 4 8 42 19 13 11 1 0 11 1 0 20 6 1 10 1 2 138 21 14 102 14 11 19 35 18 173 3 0 665 0 1 4 5 6 113 0 2 109 1 0 115 0 2 31 4 5 503 26 6 52 1 0 172 1 0 222 1 2 22 1 0 96 6 0 219 0 9 339 0 1 190 0 1 115 5 6 18 0 6 109 0 1 80 12 0 234 22 22 77 14 16 649 0 2 5 13 11 244 0 1 113 chain 8187 chr1_gl000192_random 547496 + 164587 164677 L1PA3long 6157 - 1202 1292 169033 90 chain 110019 chr1_gl000192_random 547496 + 164677 165877 L1PA3long 6157 + 4956 6157 34213 364 0 1 836 chain 70784 chr1_gl000192_random 547496 + 184021 184797 L1HS 6032 - 1829 2605 47733 776 chain 168026 chr1_gl000192_random 547496 + 184797 186626 L1HS 6032 + 4202 6031 22281 1829 chain 34302 chr1_gl000192_random 547496 + 186659 187041 L1PA3long 6157 + 5774 6157 77208 43 0 1 339 chain 30444 chr1_gl000192_random 547496 + 223438 223785 L1PA5 6144 + 5795 6141 83541 31 0 1 64 1 0 98 1 0 152 chain 566505 chr1_gl000192_random 547496 + 231794 237825 L1HS 6032 + 0 6031 117 6031 chain 39437 chr1_gl000192_random 547496 + 240553 241055 MER1A 529 - 0 498 70107 63 13 8 189 0 1 237 chain 21851 chr1_gl000192_random 547496 + 267083 267376 L1PA8 5853 - 0 287 120813 93 1 0 19 2 1 51 1 0 10 2 1 70 2 0 42 chain 11594 chr1_gl000192_random 547496 + 273193 273365 MER58A 224 - 9 182 153922 81 15 16 76 chain 8797 chr1_gl000192_random 547496 + 294650 294783 L1MC1 2226 - 179 308 166658 55 3 1 8 4 2 63 chain 88539 chr1_gl000192_random 547496 + 301711 302655 L1PA2 6032 + 5082 6026 40171 944 chain 36644 chr1_gl000192_random 547496 + 350928 351341 L1PA4 6152 + 5723 6143 74033 283 0 7 130 chain 22564 chr1_gl000192_random 547496 + 389090 389362 AluSc5 308 - 16 298 117745 252 0 10 20 chain 10775 chr1_gl000192_random 547496 + 397253 397476 L1PB1 5432 - 10 210 157095 6 1 0 12 1 0 13 1 0 21 1 0 24 2 0 14 9 6 18 17 14 13 10 0 44 1 0 15 chain 4441 chr1_gl000192_random 547496 + 425055 425108 MLT1B 390 - 308 361 201438 53 chain 3916 chr1_gl000192_random 547496 + 445206 445366 MLT1B 390 + 0 154 208606 16 20 13 29 69 70 26 chain 7312 chr1_gl000192_random 547496 + 468369 468445 tRNA-Asn-AAT 76 + 0 76 175358 76 chain 13038 chr1_gl000192_random 547496 + 500632 500780 L1PA4 6152 + 6004 6152 148087 148 chain 13169 chr1_gl000192_random 547496 + 507210 507353 L1PA3long 6157 + 6006 6149 147584 143 chain 28975 chr1_gl000192_random 547496 + 517699 518033 L1PA5 6144 - 16 350 89109 334 chain 25069 chr1_gl000192_random 547496 + 520437 520759 AluY 311 + 0 307 104462 125 30 15 167 chain 43169 chr1_gl000192_random 547496 + 524370 524911 MLT2A2 560 - 0 546 65212 6 0 4 345 0 1 190 chain 27866 chr1_gl000192_random 547496 + 526435 526734 AluYf4 310 - 11 310 93471 299 chain 24045 chrUn_gl000225 211173 + 60968 61228 AluYa5 310 - 13 272 110081 171 1 0 88 chain 278143 chrUn_gl000225 211173 + 144679 147967 L1PA4 6152 + 2866 6151 14744 330 16 14 4 0 1 396 0 1 1686 4 0 406 0 1 446 chain 14249 chrUn_gl000225 211173 + 171673 171832 L1PA3long 6157 - 4 163 143727 159 chain 3866 chrUn_gl000225 211173 + 183255 183306 U2 167 + 0 56 209352 45 0 5 6 chain 19100 chrUn_gl000225 211173 + 205530 205766 L1PA4 6152 - 15 252 129814 31 5 6 4 1 0 99 0 1 96 chain 5470 chr4_gl000194_random 191469 + 840 938 L1MA3 4352 - 20 112 190298 4 1 0 11 1 0 29 1 0 6 1 0 24 6 4 14 chain 92087 chr4_gl000194_random 191469 + 30316 31650 L1PB 1623 - 232 1525 38942 81 18 7 313 0 1 181 25 27 101 0 1 189 43 22 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 25456 chr4_gl000194_random 191469 + 47378 47673 L1PA5 6144 - 0 295 102430 295 chain 14647 chr4_gl000194_random 191469 + 66700 67022 L1MA2 4263 - 124 430 142431 14 3 1 7 2 0 12 1 0 49 9 0 7 1 3 16 1 0 52 16 15 5 1 0 12 31 30 83 chain 9244 chr4_gl000194_random 191469 + 79596 79797 MSTA-int 1630 + 23 224 164333 83 3 0 6 1 0 6 68 72 34 chain 16658 chr4_gl000194_random 191469 + 110433 110780 MER57-int 2662 + 2332 2647 136516 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27368 chr4_gl000194_random 191469 + 120362 120741 L1MA3 4352 + 3059 3445 95054 41 8 16 286 4 3 40 chain 414140 chr4_gl000194_random 191469 + 123407 128598 L1PA7 6471 - 7 5341 9695 5 3 0 132 1 0 4 7 2 7 0 7 481 0 2 5 9 7 108 0 2 78 0 4 110 0 3 431 7 8 112 19 19 60 6 7 118 0 1 463 0 1 472 0 1 72 0 70 122 2 6 301 4 0 6 0 4 7 1 0 4 0 1 331 0 4 250 1 2 57 1 11 77 1 0 244 0 4 132 2 0 5 5 7 332 0 1 209 8 6 251 0 40 128 chain 147824 chr4_gl000194_random 191469 + 135802 137821 HERVK9-int 4720 - 1107 4666 24898 247 76 716 230 0 924 147 0 1 676 22 0 181 7 6 257 14 15 50 6 5 26 1 0 8 1 0 42 0 1 23 1 0 4 chain 34597 chr4_gl000194_random 191469 + 139167 139617 MER9a2 513 - 0 513 76761 11 0 4 6 5 1 79 5 0 18 0 2 98 1 67 207 0 1 4 1 0 15 chain 132416 chr4_gl000194_random 191469 + 139617 141301 HERVK14-int 1672 - 7 1671 27539 6 1 0 140 1 0 9 2 0 31 1 0 63 1 0 88 0 1 18 0 1 140 28 28 35 1 0 34 3 0 9 3 1 79 1 0 163 2 1 250 1 0 235 2 0 28 1 0 172 2 1 44 1 0 47 1 0 12 1 0 28 chain 22494 chr4_gl000194_random 191469 + 141396 141676 LTR14A 344 - 0 344 118053 177 0 4 63 0 60 40 chain 20842 chr4_gl000194_random 191469 + 155748 155988 L1PA4 6152 + 5900 6140 124480 240 chain 29655 chr4_gl000194_random 191469 + 165380 165700 AluYb8 318 + 0 318 86046 132 2 0 186 chain 531137 chr4_gl000194_random 191469 + 168446 174573 L1PA4 6152 - 9 6152 4066 1507 2 1 594 0 1 361 0 1 238 0 3 1005 0 3 1193 2 0 195 0 1 175 3 0 174 11 10 540 1 15 126 chain 36735 chr4_gl000194_random 191469 + 175930 176381 L1PA5 6144 + 5688 6144 73904 122 1 2 77 0 4 251 chain 150167 chr4_gl000194_random 191469 + 184779 186535 L1PA4 6152 + 4383 6149 24591 102 0 5 810 1 5 167 0 1 627 9 0 8 0 9 32 chain 9544 chr4_gl000194_random 191469 + 189819 189932 HERVH-int 3825 - 1546 1659 162866 113 chain 127188 chr4_gl000194_random 191469 + 189940 191469 SVA_D 2077 + 6 2056 28769 19 5 0 10 13 5 441 0 2 242 39 0 44 0 40 19 0 40 47 2 491 38 0 1 4 0 1 606 chain 6693 chr4_gl000193_random 189789 + 3321 3407 LTR12C 1709 + 773 1018 144554 32 0 159 54 chain 24241 chr4_gl000193_random 189789 + 3407 3705 LTR12C 1709 + 699 996 108992 138 1 0 159 chain 3250 chr4_gl000193_random 189789 + 63379 63420 MER45A 178 - 37 78 220014 41 chain 35613 chr4_gl000193_random 189789 + 115345 115759 HERVH-int 3825 + 3411 3825 75399 414 chain 120358 chr4_gl000193_random 189789 + 125747 127100 L1PA3long 6157 - 0 1352 30919 148 1 0 1204 chain 8666 chr4_gl000193_random 189789 + 130806 131023 L1PA13 3608 - 3194 3390 167392 100 98 77 19 chain 27003 chr4_gl000193_random 189789 + 131093 131389 AluYa5 310 - 14 310 96273 296 chain 11810 chr4_gl000193_random 189789 + 152853 152996 L1PA6 6164 - 3 147 152982 86 0 1 57 chain 11291 chr4_gl000193_random 189789 + 183489 183644 L1PA8 5853 - 14 170 155085 79 1 0 19 7 9 49 chain 46170 chr4_gl000193_random 189789 + 183682 184257 L1PA7 6471 - 41 624 61873 121 13 17 54 1 5 386 chain 28518 chr9_gl000200_random 187035 + 2554 2930 THE1C 375 + 0 374 91107 125 3 0 182 7 9 33 1 0 25 chain 16997 chr9_gl000200_random 187035 + 15837 16072 LTR8 732 - 3 245 135601 10 0 3 164 11 15 50 chain 23929 chr9_gl000200_random 187035 + 46256 46559 AluSp 311 + 11 302 110759 278 12 0 13 chain 15787 chr9_gl000200_random 187035 + 52604 52872 Tigger5 388 + 107 364 138991 29 11 0 93 12 16 16 2 0 10 1 0 27 2 0 15 1 2 49 chain 39342 chr9_gl000200_random 187035 + 56441 56947 MER41C 542 - 0 515 70264 222 5 6 56 0 7 201 0 1 22 chain 28750 chr9_gl000200_random 187035 + 64077 64378 AluYa5 310 - 9 310 90116 301 chain 28935 chr9_gl000200_random 187035 + 65858 66160 AluYa8 305 - 3 305 89298 302 chain 3557 chr9_gl000200_random 187035 + 73400 73438 L1PA17 2846 - 153 191 214403 38 chain 15928 chr9_gl000200_random 187035 + 75328 75543 MER107 203 - 0 197 138585 30 3 0 11 15 0 156 chain 46436 chr9_gl000200_random 187035 + 80098 80652 L1PA4 6152 + 5604 6151 61646 75 20 12 52 0 1 407 chain 98778 chr9_gl000200_random 187035 + 80898 82099 L1P3 4156 + 0 1191 37078 57 7 0 194 1 0 71 1 0 85 0 2 19 1 0 185 11 9 569 chain 10114 chr9_gl000200_random 187035 + 106837 106959 L1PA16 3655 + 1936 2057 160021 65 1 0 56 chain 28513 chr9_gl000200_random 187035 + 113330 113637 AluYk12 309 - 2 309 91130 307 chain 43319 chr9_gl000200_random 187035 + 114493 115031 MLT2A2 560 - 0 557 65013 6 0 4 335 1 2 9 0 1 18 0 12 32 0 1 137 chain 29752 chr9_gl000200_random 187035 + 116497 116818 AluYb8 318 + 0 318 85641 123 3 0 195 chain 4105 chr9_gl000200_random 187035 + 126815 126883 L1MC 810 - 535 602 205860 27 1 0 28 2 0 5 0 2 5 chain 23971 chr9_gl000200_random 187035 + 182190 182478 AluY 311 + 0 284 110496 4 1 0 128 0 1 15 4 0 136 chain 88731 chrUn_gl000222 186861 + 4653 5736 L1PA5 6144 - 1944 3031 40077 126 0 1 131 1 0 198 1 0 254 0 4 327 1 2 44 chain 163371 chrUn_gl000222 186861 + 5736 7679 L1PA5 6144 + 4179 6138 22895 364 0 1 324 0 4 300 0 6 97 0 4 14 0 9 430 8 0 406 chain 5508 chrUn_gl000222 186861 + 10168 10785 MER2 342 + 13 336 189962 13 0 56 10 75 19 39 356 61 35 70 71 19 chain 60452 chrUn_gl000222 186861 + 25760 26774 MER11A 1151 - 0 1149 52607 59 8 7 9 0 6 14 0 4 36 30 31 87 6 64 9 6 0 2 0 7 69 0 4 37 20 24 173 20 21 158 37 0 36 23 20 75 2 0 45 12 111 41 chain 4238 chrUn_gl000222 186861 + 42387 42564 MER101-int 1169 + 886 1052 204055 21 18 20 28 19 9 18 54 51 19 chain 10885 chrUn_gl000222 186861 + 44291 44455 MSTB 430 + 24 194 156638 51 12 14 51 1 5 49 chain 104206 chrUn_gl000222 186861 + 45004 46291 L1P1 4361 - 3096 4360 35687 35 5 4 414 17 0 238 1 0 44 4 0 529 chain 61777 chrUn_gl000222 186861 + 72449 73244 L1PB1 5432 - 759 1555 52006 47 3 0 215 4 5 22 1 0 4 2 3 170 0 2 242 0 1 85 chain 44170 chrUn_gl000222 186861 + 73244 74016 L1PB1 5432 + 4663 5414 63842 11 0 3 127 1 9 170 2 1 119 13 11 23 1 0 5 1 0 4 1 0 8 9 5 9 2 0 52 2 1 16 2 1 39 7 6 13 28 16 15 2 0 4 1 0 11 8 6 22 1 0 6 1 4 11 1 0 13 2 1 9 chain 6170 chrUn_gl000222 186861 + 102421 102535 L1MA6 2487 - 318 420 183802 58 26 14 30 chain 71659 chrUn_gl000222 186861 + 107340 108304 LTR5_Hs 974 - 0 974 47625 147 9 11 137 3 6 5 1 0 8 1 2 26 13 14 155 0 4 459 chain 27553 chrUn_gl000222 186861 + 114046 114385 LTR17 781 + 445 781 94492 325 1 0 4 2 0 7 chain 114295 chrUn_gl000222 186861 + 114705 116507 L1PA8 5853 - 0 1471 32995 92 3 2 18 2 1 52 2 1 8 1 0 13 8 9 48 2 0 45 1 0 502 339 0 49 2 7 85 0 2 16 0 1 43 0 5 251 5 6 215 chain 347960 chrUn_gl000222 186861 + 145495 149563 HERVE-int 4064 + 0 4064 11668 287 7 0 298 2 1 227 4 1 709 13 14 674 3 0 301 2 0 508 0 1 376 0 10 70 1 0 18 0 1 568 chain 85451 chrUn_gl000222 186861 + 159926 160955 LTR5A 1029 + 0 1029 41362 147 6 5 720 1 2 155 chain 106548 chrUn_gl000222 186861 + 164610 166009 LTR12C 1709 - 0 1709 35108 82 1 0 69 1 0 330 11 4 6 1 0 100 9 6 126 0 278 242 0 2 65 18 61 24 1 0 32 15 16 266 chain 22170 chrUn_gl000222 186861 + 169893 170179 AluY 311 + 4 291 119492 126 1 2 11 3 0 7 3 6 135 chain 12043 chrUn_gl000222 186861 + 180517 180671 L1MA8 2339 - 257 408 152014 73 1 0 55 2 0 23 chain 19703 chrUn_gl000222 186861 + 184051 184312 L1PA8 5853 - 11 267 128086 82 1 0 19 2 1 61 1 0 69 6 4 20 chain 498519 chrUn_gl000212 186858 + 10933 17069 L1PA4 6152 + 10 6136 6927 93 38 63 50 3 2 197 0 3 9 4 1 166 23 7 321 3 7 23 24 0 80 4 5 4 1 0 133 12 3 825 0 1 748 0 1 412 0 1 202 0 1 512 0 1 527 0 1 466 0 4 421 0 1 835 chain 8443 chrUn_gl000212 186858 + 17202 17305 L1PA4 6152 - 0 108 168603 6 0 5 97 chain 21647 chrUn_gl000212 186858 + 31782 32060 AluSc 308 + 11 299 121583 63 3 11 14 1 3 197 chain 3289 chrUn_gl000212 186858 + 37858 37913 L1MCa 1829 + 31 81 219188 6 5 0 17 0 1 18 1 0 8 chain 25654 chrUn_gl000212 186858 + 68413 68775 L1PB 1623 + 649 1009 101471 46 1 0 161 24 23 130 chain 78020 chrUn_gl000212 186858 + 79706 80671 LTR5_Hs 974 + 0 974 44501 418 1 2 32 0 4 203 0 1 32 0 2 82 7 7 21 0 1 169 chain 23154 chrUn_gl000212 186858 + 94247 94549 AluY 311 + 11 311 114872 70 20 18 212 chain 13617 chrUn_gl000212 186858 + 98268 98422 L1PA3long 6157 + 6003 6157 145912 154 chain 21017 chrUn_gl000212 186858 + 104256 104488 L1PA5 6144 + 5900 6132 123855 232 chain 9262 chrUn_gl000212 186858 + 111457 111577 MER5A1 166 + 8 138 164251 29 0 10 91 chain 232657 chr7_gl000195_random 182896 + 6060 8998 L1PA6 6164 - 5 2958 17163 112 4 5 646 0 2 339 4 5 651 1 0 52 0 1 4 1 0 21 0 1 38 2 1 87 1 0 478 0 13 267 1 3 5 2 0 222 chain 33516 chr7_gl000195_random 182896 + 10491 11333 HERVL66-int 1251 + 162 878 78381 16 19 13 64 26 0 35 0 1 8 20 1 17 91 57 80 1 2 40 1 0 60 22 11 22 10 7 45 1 0 37 1 0 45 34 32 21 77 53 49 chain 40416 chr7_gl000195_random 182896 + 34393 34844 LTR7 482 + 0 482 68711 242 0 31 209 chain 29462 chr7_gl000195_random 182896 + 55089 55401 AluYb8 318 + 0 312 86789 312 chain 226240 chr7_gl000195_random 182896 + 60042 63056 L1PA7 6471 + 3315 6350 17519 40 7 6 83 2 6 34 13 12 82 0 4 873 0 6 10 4 1 185 1 2 165 0 2 129 2 0 284 0 1 265 0 1 115 1 0 18 0 1 158 2 1 13 1 10 199 37 37 73 0 1 218 chain 3818 chr7_gl000195_random 182896 + 75885 75932 L1PA11 4918 + 2023 2071 210121 23 0 1 24 chain 100752 chr7_gl000195_random 182896 + 80199 81518 LTR12C 1709 + 0 1709 36572 208 32 49 81 0 43 83 0 1 21 1 2 162 0 278 143 0 47 106 0 4 399 1 0 82 chain 49792 chr7_gl000195_random 182896 + 88076 88756 L1PA8 5853 - 786 1471 59165 53 24 28 374 14 15 215 chain 4483 chr7_gl000195_random 182896 + 117597 117649 L1P4 1494 - 1010 1062 200985 52 chain 51172 chr7_gl000195_random 182896 + 135897 136582 L1PA8 5853 + 4382 5067 58203 215 14 15 381 9 1 12 0 7 54 chain 226989 chr7_gl000195_random 182896 + 160266 163303 L1PA7 6471 - 129 3179 17487 210 0 1 337 2 1 82 2 1 75 5 6 8 1 0 86 1 2 163 12 13 408 2 0 112 7 8 170 0 1 151 0 2 152 0 3 423 0 1 286 0 1 57 0 4 23 17 18 41 17 16 85 0 1 102 chain 87661 chrUn_gl000223 180455 + 9596 10607 LTR5A 1029 + 0 1029 40506 132 1 15 37 0 2 129 0 1 587 0 1 125 chain 101623 chrUn_gl000223 180455 + 10623 13734 HERVK-int 6823 + 14 6567 36365 4 1 0 20 15 13 24 1 0 25 1 0 22 1 0 11 2 0 169 1 0 4 0 1 148 1 0 11 52 55 107 0 9 7 1051 4520 7 4 0 229 5 4 23 19 136 66 1 0 96 1 0 22 1 0 101 1 0 35 0 2 121 1 0 41 36 30 71 2 0 7 1 0 19 21 15 11 1 0 19 1 0 3 2 0 10 1 0 4 163 87 10 7 3 9 2 0 15 1 0 11 1 0 3 1 0 11 2 0 29 40 29 10 2 0 4 4 0 8 1 0 8 4 2 29 1 0 4 1 0 13 34 25 17 1 0 4 chain 87686 chrUn_gl000223 180455 + 14533 15543 LTR5A 1029 + 0 1029 40495 132 1 15 163 0 1 535 0 4 179 chain 33570 chrUn_gl000223 180455 + 26110 26615 MER41A 554 - 7 554 78286 17 1 0 44 17 22 33 0 1 149 5 23 7 0 7 11 26 38 195 chain 9096 chrUn_gl000223 180455 + 26624 26747 MER41A 554 - 307 432 165089 75 5 7 43 chain 7109 chrUn_gl000223 180455 + 58453 58538 5S 121 + 3 88 176690 85 chain 3689 chrUn_gl000223 180455 + 97583 97628 MSTA 426 + 381 426 212098 45 chain 4548 chrUn_gl000223 180455 + 106868 106919 LTR47A 437 + 267 318 200241 51 chain 61270 chrUn_gl000223 180455 + 120882 121832 L1MA3 4352 + 3416 4332 52222 565 0 1 102 0 1 8 47 31 32 6 10 13 1 0 24 0 2 40 9 13 20 44 17 19 2 1 13 1 0 4 chain 73845 chrUn_gl000223 180455 + 128318 129311 LTR13 1007 - 0 1007 46593 30 2 0 159 5 6 106 3 20 56 1 0 177 1 2 44 25 26 113 0 2 128 1 2 68 6 0 68 chain 10518 chrUn_gl000223 180455 + 134546 134792 MLT1A1 405 - 0 244 158173 85 15 16 30 46 45 32 18 17 11 1 0 8 chain 18416 chrUn_gl000223 180455 + 135859 136465 MLT2A2 560 - 265 560 131730 61 351 42 12 2 0 180 chain 6397 chrUn_gl000223 180455 + 136919 137039 MSTB 430 + 26 154 182045 69 35 43 16 chain 7182 chrUn_gl000223 180455 + 137738 137822 MER52A 1651 - 0 84 176199 84 chain 76116 chrUn_gl000223 180455 + 141284 142240 LTR13_ 950 - 0 942 45411 297 0 6 10 14 0 32 21 11 188 6 5 128 0 2 134 1 4 125 chain 3076 chrUn_gl000223 180455 + 148710 148839 LTR7B 505 + 268 341 223386 16 5 7 21 65 7 22 chain 34821 chrUn_gl000223 180455 + 156619 157155 LTR14 556 - 0 552 76446 91 7 6 132 12 8 116 0 4 46 50 52 12 0 13 64 0 2 6 chain 131897 chrUn_gl000223 180455 + 166060 167605 LTR12C 1709 - 0 1709 27658 231 0 1 37 0 1 211 0 4 107 3 1 5 1 0 180 0 161 456 1 0 4 3 4 306 chain 38062 chrUn_gl000224 179693 + 43482 43967 L1P1 4361 - 759 1247 71929 73 11 10 20 8 12 373 chain 157531 chrUn_gl000224 179693 + 43967 45903 L1PA5 6144 + 4179 6139 23656 450 0 5 234 0 4 300 6 12 40 1 6 61 0 8 83 0 1 349 8 0 153 1 0 118 0 4 132 chain 73605 chrUn_gl000224 179693 + 67482 68419 LTR13_ 950 - 0 948 46728 262 4 5 87 1 0 113 0 4 38 0 2 322 0 2 32 1 4 77 chain 36900 chrUn_gl000224 179693 + 101304 101851 LTR61 567 + 0 545 73659 22 4 5 28 0 11 73 8 13 68 6 0 146 12 0 124 15 14 41 chain 419454 chrUn_gl000224 179693 + 110990 116484 L1PA3long 6157 - 5 5494 9543 918 0 1 4 1 0 50 0 1 18 0 5 22 0 1 367 7 0 129 0 1 1459 0 7 424 0 1 417 13 1 36 0 1 253 2 1 12 6 0 5 0 6 329 0 1 308 199 196 213 25 0 124 90 108 14 4 12 4 1 0 40 chain 15753 chrUn_gl000224 179693 + 117427 117628 LTR66 600 + 4 209 139101 12 3 0 5 0 3 28 0 4 153 chain 354219 chrUn_gl000219 179198 + 5265 9515 L1P1 4361 - 103 4356 11500 107 1 0 542 4 6 1724 0 1 1406 57 58 409 chain 186689 chrUn_gl000219 179198 + 18759 20956 L1PA4 6152 - 1238 3435 20360 197 2 0 68 17 14 284 0 4 179 1 2 387 0 1 492 1 0 569 chain 99555 chrUn_gl000219 179198 + 20956 22129 L1PA4 6152 + 4976 6151 36852 325 0 3 15 0 1 766 3 1 64 chain 543143 chrUn_gl000219 179198 + 34100 40135 L1PA2 6032 + 1 6032 2319 256 1 0 591 0 1 1726 5 0 1807 0 1 1649 chain 373444 chrUn_gl000219 179198 + 65376 69759 L1PA4 6152 - 9 6149 10978 617 0 1 230 0 1 659 0 1 382 0 1 251 0 3 1899 8 9 49 0 1749 288 chain 13296 chrUn_gl000219 179198 + 103519 103774 L1PA16 3655 + 3385 3619 147101 30 10 11 137 16 14 14 32 12 16 chain 101623 chrUn_gl000219 179198 + 111190 112280 L1HS 6032 - 0 1090 36314 1090 chain 185058 chrUn_gl000219 179198 + 112280 114251 L1HS 6032 + 2967 4938 20497 1971 chain 7271 chrUn_gl000219 179198 + 140486 140597 MER30 238 + 129 238 175644 70 12 10 29 chain 73330 chrUn_gl000219 179198 + 160993 161801 L1PA4 6152 - 312 1120 46826 808 chain 79434 chrUn_gl000219 179198 + 161801 162706 L1P1 4361 + 2257 3162 43856 905 chain 75472 chrUn_gl000219 179198 + 175209 176178 LTR5_Hs 974 + 0 974 45784 167 1 0 122 0 1 177 0 1 188 1 0 163 8 15 31 8 6 103 chain 4483 chr17_gl000205_random 174588 + 13533 13585 L1P4 1494 - 1010 1062 200986 52 chain 101718 chr17_gl000205_random 174588 + 31788 33666 L1PA8 5853 + 4382 5847 36338 215 14 15 381 20 20 17 439 34 19 10 7 425 0 1 46 1 0 49 2 0 67 24 22 39 3 2 18 3 2 86 chain 227385 chr17_gl000205_random 174588 + 56130 59168 L1PA7 6471 - 129 3179 17464 210 0 1 337 2 1 82 2 1 75 5 6 8 1 0 86 1 2 163 12 13 408 3 0 112 7 8 170 0 1 151 0 2 152 0 3 423 0 1 286 0 1 56 0 4 24 17 18 41 17 16 85 0 1 102 chain 40295 chr17_gl000205_random 174588 + 101682 102162 L1PA5 6144 + 5659 6140 68885 335 0 1 145 chain 40689 chr17_gl000205_random 174588 + 106521 107042 LTR66 600 - 48 600 68312 63 0 33 44 2 0 412 chain 224756 chr17_gl000205_random 174588 + 107903 113256 L1PA6 6164 + 3179 6161 17613 6 0 3 52 0 4 26 0 3 158 7 6 264 0 2 5 2 0 67 3 0 5 0 3 51 0 5 131 1 0 307 0 1 70 9 18 509 6 5 169 4 5 22 0 9 51 0 1 43 2423 12 123 0 2 32 0 1 64 0 3 414 0 1 170 25 25 134 chain 549672 chr17_gl000205_random 174588 + 123985 130008 L1PA2 6032 - 0 6028 1492 13 2 0 846 0 1 3392 0 3 735 0 3 1035 chain 7387 chr17_gl000205_random 174588 + 130316 130560 LTR66 600 - 0 262 174856 14 9 10 44 4 2 30 82 101 14 20 20 27 chain 15999 chr17_gl000205_random 174588 + 133720 133924 LTR66 600 + 5 209 138350 11 3 0 5 0 3 185 chain 3729 chrUn_gl000215 172545 + 16885 16924 HY3 101 + 61 100 211473 39 chain 27450 chrUn_gl000215 172545 + 35703 36268 LTR4 552 - 2 518 94815 86 1 0 23 39 55 61 78 7 115 12 11 11 1 0 65 43 52 30 chain 498092 chrUn_gl000215 172545 + 70193 77402 L1PA6 6164 + 4 6162 6951 100 1 0 463 1 0 40 0 1 191 1 18 82 4 8 916 0 2 325 0 6 68 0 1 107 0 2 36 0 2 27 0 4 179 0 4 65 1 0 297 0 18 225 0 1 45 0 2 61 0 1 722 0 4 318 1113 0 303 0 1 154 3 2 65 4 5 166 1 0 154 0 1 41 0 1 75 0 3 53 0 1 226 8 1 552 3 0 13 chain 84190 chrUn_gl000215 172545 + 74474 75581 MER11A 1151 + 0 1151 41827 77 0 8 143 1 0 66 0 11 11 37 0 72 0 1 22 0 1 422 1 59 192 1 0 26 0 4 36 chain 52274 chrUn_gl000215 172545 + 80096 80668 L1HS 6032 - 1 569 57444 22 1 0 307 3 0 239 chain 24132 chrUn_gl000215 172545 + 87373 87672 AluSp 311 + 10 309 109572 299 chain 24104 chrUn_gl000215 172545 + 127197 127496 L1PA7 6471 - 9 308 109726 299 chain 14473 chrUn_gl000215 172545 + 135439 135649 L1PA6 6164 - 2 212 142974 143 29 29 38 chain 4865 chrUn_gl000215 172545 + 141001 141062 MER11A 1151 - 938 997 196641 17 2 0 42 chain 18374 chrUn_gl000215 172545 + 147862 148170 LTR7B 505 + 0 505 131865 51 0 1 56 57 254 79 14 13 51 chain 79860 chrUn_gl000215 172545 + 164168 165137 LTR5_Hs 974 + 0 974 43658 285 0 1 105 2 1 427 8 15 37 2 0 103 chain 79775 chrUn_gl000215 172545 + 166763 167636 L1PA3long 6157 - 10 883 43695 873 chain 3866 chrUn_gl000216 172294 + 88940 88991 U2 167 - 111 167 209353 6 0 5 45 chain 14511 chrUn_gl000216 172294 + 100473 100632 L1PA3long 6157 + 5994 6153 142851 159 chain 2768 chrUn_gl000216 172294 + 105601 105633 MLT1F 544 - 3 35 229211 32 chain 3361 chrUn_gl000216 172294 + 106108 106189 MLT1E1A 663 + 429 536 217871 37 30 56 14 chain 23614 chrUn_gl000216 172294 + 126203 126525 MER41A 554 - 0 314 112505 156 1 2 75 0 2 5 11 0 74 chain 276873 chrUn_gl000216 172294 + 128881 132151 L1PA4 6152 - 1 3267 14825 142 1 3 5 2 0 296 0 1 398 4 0 268 3 4 1428 8 7 396 8 7 311 chain 23791 chrUn_gl000217 172149 + 1576 1919 MLT2A1 477 - 92 473 111526 13 19 27 40 0 25 106 1 5 26 0 1 138 chain 2824 chrUn_gl000217 172149 + 1958 1990 MLT2A1 477 + 445 477 228410 32 chain 17434 chrUn_gl000217 172149 + 8568 8785 L1PA7 6471 + 6248 6464 134427 60 1 0 156 chain 66214 chrUn_gl000217 172149 + 32878 33619 L1PA5 6144 + 5399 6140 49997 741 chain 189839 chrUn_gl000217 172149 + 63320 65570 L1P1 4361 - 1608 3839 20067 67 0 1 1405 1 0 156 18 4 83 0 2 275 3 4 55 7 0 127 1 0 52 chain 142859 chrUn_gl000217 172149 + 86444 88512 L1PB1 5432 - 106 2103 25675 18 16 6 6 3 0 13 5 4 43 1 0 15 2 1 42 24 22 12 3 2 7 1 0 17 56 15 19 0 1 10 0 1 258 0 2 103 0 1 73 11 7 387 1 0 19 0 1 218 10 11 253 0 2 8 9 0 5 7 0 241 0 2 152 chain 3246 chrUn_gl000217 172149 + 89699 89765 L1MCa 1829 - 175 240 220081 25 18 17 23 chain 313040 chrUn_gl000217 172149 + 93878 97426 L1PA5 6144 - 6 3573 12891 436 0 11 2008 0 2 523 1 0 25 0 5 451 0 1 20 0 1 84 chain 27980 chrUn_gl000217 172149 + 105138 105468 L1PA5 6144 - 17 348 93069 227 8 9 95 chain 19304 chrUn_gl000217 172149 + 124649 124946 THE1B 368 + 6 327 129229 38 0 15 110 1 0 29 42 52 77 chain 30214 chrUn_gl000217 172149 + 145021 145338 AluYb8 318 - 1 318 84145 317 chain 16200 chr9_gl000199_random 169874 + 25709 26016 LTR7B 505 - 64 421 137753 35 0 4 40 1 0 51 1 89 27 75 24 56 0 10 21 chain 42256 chrUn_gl000211 166566 + 0 557 L1PBa1 4058 - 2529 3083 66324 78 1 0 263 1 0 79 22 21 113 chain 10110 chrUn_gl000211 166566 + 1244 1396 Tigger3c 601 - 81 228 160043 92 4 0 16 16 15 24 chain 28621 chrUn_gl000211 166566 + 7739 8050 AluYa5 310 - 0 310 90653 184 1 0 126 chain 538641 chrUn_gl000211 166566 + 11320 17383 L1PA3long 6157 + 4 6156 3049 148 10 11 42 3 4 413 0 1 92 22 8 54 2 130 119 4 3 80 27 0 1141 0 1 3405 1 0 500 chain 93308 chrUn_gl000211 166566 + 50129 51706 L1PB 1623 - 172 1525 38561 5 1 0 32 2 1 22 183 0 81 4 7 7 13 0 302 4 5 181 24 27 101 0 1 204 28 7 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 19683 chrUn_gl000211 166566 + 71484 72705 L1PA15 4387 - 35 492 128151 20 0 3 5 18 8 20 45 43 33 4 3 13 17 15 4 1 0 55 1 0 26 1 0 39 758 0 29 11 14 5 3 0 60 15 24 38 chain 201916 chrUn_gl000211 166566 + 93669 95905 L1PA2 6032 - 0 2236 19074 146 6 0 6 8 14 2070 chain 23564 chrUn_gl000211 166566 + 117786 118050 L1PA2 6032 - 13 277 112773 264 chain 182768 chrUn_gl000211 166566 + 122300 124299 L1PA2 6032 + 4031 6032 20706 125 0 1 231 1 2 1642 chain 63641 chrUn_gl000211 166566 + 129125 129897 L1PA5 6144 - 6 777 51173 336 0 1 21 5 4 335 6 5 69 chain 131486 chrUn_gl000211 166566 + 131855 133493 SVA_C 1631 + 6 1631 27755 15 18 0 161 0 2 453 4 5 19 0 3 44 14 11 128 70 78 30 1 0 46 4 3 617 4 0 10 chain 1192 chrUn_gl000211 166566 + 132735 132781 SVA_C 1631 + 442 488 188845 46 chain 52274 chrUn_gl000213 164239 + 13213 13785 L1HS 6032 + 5463 6031 57443 239 3 0 307 1 0 22 chain 497171 chrUn_gl000213 164239 + 16479 23688 L1PA6 6164 - 2 6160 7000 13 3 0 552 8 1 226 0 1 53 0 3 75 0 1 41 0 1 156 1 0 164 4 5 65 3 2 159 0 1 293 1113 0 323 0 4 722 0 1 61 0 2 45 0 1 225 0 18 297 1 0 68 0 4 176 0 4 26 0 2 37 0 2 107 0 1 68 0 6 325 0 2 579 1 0 5 0 1 331 4 8 88 1 18 185 0 1 40 1 0 357 1 0 5 0 1 100 1 0 100 chain 83442 chrUn_gl000213 164239 + 18300 19407 MER11A 1151 - 0 1151 42142 36 0 4 26 1 0 182 1 57 9 1 3 422 0 1 22 0 1 38 37 0 45 0 11 66 1 0 141 0 8 79 chain 4406 chrUn_gl000213 164239 + 41075 41138 MER49 923 - 38 102 201862 46 4 5 13 chain 27450 chrUn_gl000213 164239 + 57531 58096 LTR4 552 + 34 550 94814 30 43 52 65 1 0 11 12 11 115 78 7 61 39 55 23 1 0 86 chain 3729 chrUn_gl000213 164239 + 76878 76917 HY3 101 - 1 40 211476 39 chain 27328 chrUn_gl000213 164239 + 79443 80000 L1MA1 4479 + 3565 4139 95180 16 13 4 130 5 4 20 2 0 16 1 0 9 4 21 41 84 103 18 1 0 5 3 0 59 0 1 62 5 4 28 7 5 28 chain 100187 chrUn_gl000213 164239 + 96420 102314 L1PA7 6471 + 2281 6469 36722 156 0 1 5 1 0 188 8 1 51 4 5 32 4376 2649 220 4 5 27 1 0 51 0 1 32 6 14 589 1 3 31 16 34 18 0 2 5 1 0 58 3 0 10 chain 27908 chrUn_gl000213 164239 + 130087 130392 L1PA2 6032 - 1 306 93327 305 chain 216278 chrUn_gl000213 164239 + 156683 159257 L1PA7 6471 - 28 2608 18101 740 1 0 79 0 3 128 12 1 193 0 1 59 0 3 433 0 1 124 0 4 65 0 2 352 0 3 92 3 4 293 chain 19153 chrUn_gl000220 161802 + 22152 22465 L1PA8 5853 - 0 315 129672 90 8 7 15 7 6 40 13 18 69 2 0 19 0 2 23 1 0 26 chain 11233 chrUn_gl000220 161802 + 30776 30935 LTR12C 1709 - 782 940 155298 90 11 10 58 chain 35042 chrUn_gl000220 161802 + 46753 47226 LTR15 485 - 10 485 76130 39 4 0 40 0 1 42 12 13 59 0 4 277 chain 30131 chrUn_gl000220 161802 + 53515 53941 LTR2 463 - 16 463 84379 49 44 45 158 1 0 12 0 21 162 chain 241184 chrUn_gl000220 161802 + 64105 66956 L1PA4 6152 - 9 2855 16712 258 0 1 22 0 1 521 0 2 30 0 4 677 1 0 193 0 1 533 8 0 9 7 5 267 0 1 120 4 0 201 chain 171035 chrUn_gl000220 161802 + 67356 69400 SVA_D 2077 - 1 2077 21939 714 48 0 144 52 0 133 0 51 41 0 1 38 0 36 11 2 0 142 0 40 468 0 6 251 chain 2280 chrUn_gl000220 161802 + 68286 68313 SVA_D 2077 - 703 730 235592 27 chain 75475 chrUn_gl000220 161802 + 75185 76035 L1PA3long 6157 + 5308 6157 45781 590 1 0 259 chain 273816 chrUn_gl000220 161802 + 82716 85998 L1P1 4361 + 1 3290 14983 626 0 2 91 5 6 279 0 1 42 0 1 5 2 1 174 1 2 578 0 2 940 1 0 21 0 1 4 1 0 425 0 1 87 chain 35514 chrUn_gl000220 161802 + 86722 87197 L1PA5 6144 + 5659 6135 75535 53 0 1 178 4 2 71 23 25 146 chain 16259 chrUn_gl000220 161802 + 117961 118401 LSU-rRNA_Hsa 377 + 19 366 137583 21 9 8 60 1 0 16 1 0 14 4 0 27 177 93 42 3 1 65 chain 5121 chrUn_gl000218 161147 + 27960 28135 Tigger4 2445 + 216 401 193866 6 2 0 11 7 6 28 8 11 12 59 69 42 chain 25582 chrUn_gl000218 161147 + 32617 32906 L1PA5 6144 - 6 295 101812 289 chain 16750 chrUn_gl000218 161147 + 92815 93162 MER57-int 2662 + 2332 2647 136256 92 18 12 68 36 21 12 0 1 5 9 6 26 29 23 27 3 0 22 chain 27460 chrUn_gl000218 161147 + 102733 103112 L1MA3 4352 + 3059 3445 94781 41 8 16 286 4 3 40 chain 417390 chrUn_gl000218 161147 + 105690 110879 L1PA7 6471 - 7 5341 9594 5 3 0 132 1 0 4 1 3 557 0 1 58 0 2 78 0 4 110 0 3 433 5 6 112 19 19 60 6 7 118 0 1 463 0 1 472 0 1 72 0 70 122 2 6 301 4 0 6 14 18 329 0 4 242 4 5 62 1 11 77 1 0 244 0 4 476 0 1 209 8 6 184 0 1 66 0 40 128 chain 149439 chrUn_gl000218 161147 + 118101 120118 HERVK9-int 4720 - 1107 4666 24696 273 52 690 230 0 924 147 0 1 676 18 0 444 14 15 50 6 5 10 12 12 4 1 0 8 1 0 66 1 0 4 chain 35062 chrUn_gl000218 161147 + 121461 121917 MER9a2 513 - 0 513 76100 11 0 4 6 5 1 77 11 0 20 0 2 98 1 67 207 0 1 4 1 0 15 chain 132521 chrUn_gl000218 161147 + 121917 123601 HERVK14-int 1672 - 7 1671 27519 6 1 0 140 1 0 9 2 0 31 1 0 63 1 0 88 0 1 18 0 1 140 28 28 35 1 0 34 3 0 9 2 0 80 1 0 163 2 1 250 1 0 233 3 1 29 1 0 172 2 1 44 1 0 47 1 0 12 1 0 28 chain 23175 chrUn_gl000218 161147 + 123696 123976 LTR14A 344 - 0 344 114786 177 0 4 63 0 60 40 chain 21235 chrUn_gl000218 161147 + 138039 138279 L1PA4 6152 + 5900 6140 123076 240 chain 529592 chrUn_gl000218 161147 + 150396 156523 L1PA4 6152 - 9 6152 4235 251 1 2 1254 2 1 1342 1 0 6 0 1 854 0 3 1394 0 1 169 3 0 174 11 10 175 0 2 363 1 15 126 chain 34516 chrUn_gl000218 161147 + 157899 158335 L1PA5 6144 + 5707 6144 76881 103 1 2 169 17 17 146 chain 5445 chr19_gl000209_random 159169 + 146243 146315 MER2B 336 + 176 248 190570 72 chain 3125 chrUn_gl000221 155397 + 18314 18351 L1MB8 1703 - 192 230 222443 14 0 1 23 chain 8765 chrUn_gl000221 155397 + 41673 41797 MSTA-int 1630 + 1488 1611 166843 28 6 5 90 chain 528766 chrUn_gl000221 155397 + 65216 71368 L1PA2 6032 + 0 6031 4331 153 16 15 51 5 1 32 5 4 513 137 9 261 0 3 57 0 3 335 0 2 1124 1 2 482 1 2 266 0 3 2713 chain 4277 chrUn_gl000221 155397 + 75520 75575 MER57-int 2662 + 2334 2388 203515 8 1 0 46 chain 419778 chrUn_gl000221 155397 + 88277 93436 L1PA7 6471 - 7 5341 9536 155 5 6 681 1 5 108 1 4 579 8 9 165 0 1 463 0 1 130 0 2 160 0 30 29 0 2 192 0 70 122 1 5 649 0 4 256 1 2 57 1 11 81 1 0 240 0 4 683 3 0 5 0 1 254 8 48 120 chain 19178 chrUn_gl000221 155397 + 100437 100650 AluYk11 308 - 95 308 129591 213 chain 149543 chrUn_gl000221 155397 + 100690 102722 HERVK9-int 4720 - 1049 4683 24682 11 0 63 231 78 716 230 0 924 513 7 8 302 17 0 510 6 5 26 1 0 9 2 1 64 1 0 4 8 5 12 chain 38004 chrUn_gl000221 155397 + 104042 104489 MER9a2 513 - 0 513 72127 219 1 67 227 chain 133375 chrUn_gl000221 155397 + 104489 106172 HERVK14-int 1672 - 7 1671 27350 6 1 0 140 1 0 9 2 0 31 1 0 63 1 0 88 0 1 18 0 1 203 1 0 32 17 12 79 1 0 163 4 3 28 0 1 42 1 0 177 1 0 235 2 0 28 1 0 217 1 0 46 2 1 11 1 0 29 chain 24099 chrUn_gl000221 155397 + 106267 106551 LTR14A 344 - 0 344 109750 244 0 60 40 chain 21048 chrUn_gl000221 155397 + 120599 120839 L1PA4 6152 + 5900 6140 123734 240 chain 523419 chrUn_gl000221 155397 + 132979 139090 L1PA4 6152 - 0 6137 4820 13 0 3 244 0 1 231 0 1 294 0 1 699 0 1 35 1 0 947 9 8 472 0 1 769 0 3 697 0 1 284 1 2 411 0 1 892 1 15 111 chain 34917 chrUn_gl000221 155397 + 140464 140904 L1PA5 6144 + 5688 6129 76315 122 1 2 178 18 18 121 chain 3639 chrUn_gl000221 155397 + 147263 147308 MER5A 189 - 132 177 212984 45 chain 151415 chrUn_gl000221 155397 + 149221 150968 L1PA4 6152 + 4383 6146 24408 143 0 5 516 0 1 256 0 4 86 0 4 419 0 1 220 0 1 107 chain 4159 chrUn_gl000214 137718 + 2246 2313 L1PB1 5432 + 5346 5410 205105 24 1 0 22 1 0 12 1 0 6 chain 23885 chrUn_gl000214 137718 + 3746 4030 LTR14A 344 + 0 344 110997 42 0 60 242 chain 132497 chrUn_gl000214 137718 + 4126 5805 HERVK14-int 1672 + 1 1665 27525 28 1 0 12 1 0 47 1 0 217 1 0 22 4 6 235 1 0 246 6 5 163 1 0 79 3 1 9 3 0 35 1 0 202 0 1 18 0 1 88 1 0 59 10 9 26 2 0 9 1 0 140 1 0 6 chain 44211 chrUn_gl000214 137718 + 5805 6318 MER9a2 513 + 0 513 63931 513 chain 148887 chrUn_gl000214 137718 + 7639 9679 HERVK9-int 4720 + 36 3614 24772 13 8 5 4 1 0 66 1 0 5 20 19 10 6 5 312 2 1 195 23 8 289 17 16 512 0 924 230 52 690 274 chain 419963 chrUn_gl000214 137718 + 16861 22053 L1PA7 6471 + 1130 6468 9533 31 0 1 96 1 41 250 7 6 683 1 5 246 1 0 77 1 11 57 1 2 256 0 4 649 10 14 113 0 70 413 0 2 130 0 1 463 1 2 49 0 1 631 0 3 6 4 2 58 3 6 108 1 5 698 3 4 144 chain 14355 chrUn_gl000214 137718 + 38536 38735 MER57-int 2662 - 2290 2494 143358 51 10 8 78 0 2 48 0 5 12 chain 533946 chrUn_gl000214 137718 + 39518 45649 L1PA3long 6157 - 15 6153 3711 1088 0 1 4 1 0 150 6 13 1198 0 1 516 5 6 1916 1 2 652 0 1 373 4 0 217 chain 67047 chrUn_gl000214 137718 + 89282 90049 L1PA5 6144 + 5367 6135 49635 435 0 1 332 chain 12849 chrUn_gl000214 137718 + 97117 97421 L1PA15 4387 + 4064 4352 148850 40 1 0 26 1 0 55 1 0 4 17 15 13 4 3 33 46 43 20 18 8 5 0 3 20 chain 5019 chrUn_gl000214 137718 + 111728 111803 L1PB 1623 + 1378 1451 194936 35 2 1 32 1 0 5 chain 64401 chrUn_gl000228 129120 + 11609 12396 L1PB1 5432 - 759 1545 50840 47 3 0 419 0 2 318 chain 33664 chrUn_gl000228 129120 + 21236 21838 LTR2 463 - 0 463 78150 65 16 17 120 0 1 198 157 16 46 chain 28270 chrUn_gl000228 129120 + 56555 56894 LTR17 781 + 445 781 92039 325 1 0 4 2 0 7 chain 108224 chrUn_gl000228 129120 + 57214 59003 L1PA8 5853 - 0 1471 34638 92 7 6 14 2 1 52 2 1 8 4 3 10 17 18 39 2 0 18 1 0 27 1 0 476 10 11 15 327 0 49 0 4 87 0 2 17 0 1 43 0 5 170 0 4 77 5 6 187 8 6 22 chain 4177 chrUn_gl000227 128374 + 3278 3325 L1PA6 6164 - 5 52 204871 47 chain 23933 chrUn_gl000227 128374 + 4765 5035 L1PA5 6144 - 2 272 110728 270 chain 23685 chrUn_gl000227 128374 + 13601 13910 L1PA8A 6298 + 5870 6175 112125 129 9 9 126 4 0 41 chain 7532 chrUn_gl000227 128374 + 16798 16881 L1PA5 6144 + 6046 6129 173959 83 chain 65206 chrUn_gl000227 128374 + 18807 19528 L1PA4 6152 - 178 900 50469 48 0 1 673 chain 14595 chrUn_gl000227 128374 + 19528 19694 L1PA4 6152 + 5975 6141 142610 166 chain 509049 chrUn_gl000227 128374 + 21979 28406 L1PA7 6471 + 0 6469 6240 196 3 2 63 2 3 139 1 0 9 10 7 141 1 8 59 7 8 20 1 0 4 0 1 228 20 14 530 5 0 265 0 1 243 0 1 458 2 3 229 0 1 450 10 7 6 0 4 299 0 7 6 13 11 61 8 8 5 3 0 187 3 7 144 1 0 165 4 0 97 0 1 248 0 5 131 0 35 125 0 2 52 2 0 194 1 2 457 1 0 256 0 1 15 1 0 14 7 11 423 1 0 239 0 6 6 0 2 6 12 5 126 2 0 10 chain 23582 chrUn_gl000227 128374 + 43107 43650 L2c 621 - 0 521 112675 15 4 0 12 11 13 53 18 12 113 1 0 60 9 0 9 70 77 65 18 19 35 26 14 24 chain 7951 chrUn_gl000227 128374 + 84953 85054 L1PA7 6471 + 3451 3549 171323 52 3 0 46 chain 229173 chrUn_gl000227 128374 + 85058 88176 L1PA7 6471 + 3557 6377 17346 712 1 2 4 1 0 223 1 0 4 0 1 54 318 0 554 10 11 32 1 0 4 7 9 456 0 2 16 0 4 308 0 8 334 11 14 10 1 2 56 chain 49671 chrUn_gl000227 128374 + 89284 90106 L1PB1 5432 + 4577 5395 59255 52 0 2 27 0 10 45 1 0 91 1 0 194 1 0 39 1 9 54 19 17 21 1 0 9 1 0 11 5 1 9 12 10 42 2 1 15 1 0 32 0 1 12 1 0 4 70 63 22 1 0 21 1 0 4 chain 16114 chrUn_gl000227 128374 + 99460 99819 THE1B 368 + 0 368 138015 108 125 135 59 18 17 49 chain 27761 chrUn_gl000227 128374 + 103894 104228 LTR12 884 + 544 884 93832 20 0 6 314 chain 56799 chrUn_gl000227 128374 + 104665 105422 LTR12 884 - 0 884 54655 183 2 0 34 1 0 7 1 0 229 0 3 51 1 89 177 7 48 48 2 1 14 chain 46349 chrUn_gl000227 128374 + 113272 113899 LTR71B 605 + 0 604 61730 137 12 10 54 3 0 148 15 0 129 0 2 42 9 4 78 chain 37892 chr1_gl000191_random 106433 + 3055 3516 LTR2 463 + 0 463 72294 129 0 3 22 4 3 306 chain 15589 chr1_gl000191_random 106433 + 4577 4774 MER4B 649 - 443 641 139615 158 1 2 38 chain 127565 chr1_gl000191_random 106433 + 4824 6296 SVA_D 2077 + 18 2056 28679 14 16 0 135 5 13 46 1 2 459 0 40 181 1 0 4 0 86 31 0 448 579 chain 19879 chr1_gl000191_random 106433 + 7073 7339 MER11A 1151 - 0 268 127555 155 14 15 60 0 1 37 chain 25283 chr1_gl000191_random 106433 + 12199 12501 AluSp 311 + 4 306 103300 302 chain 7182 chr1_gl000191_random 106433 + 15114 15227 L1MB3 1562 - 790 907 176192 20 10 14 83 chain 65703 chr1_gl000191_random 106433 + 56351 57113 SVA_C 1631 - 2 757 50247 598 4 0 13 1 0 62 1 0 46 2 1 35 chain 102677 chr1_gl000191_random 106433 + 59732 61887 L1PB1 5432 - 37 1495 36080 4 1 0 21 1 0 24 2 0 13 9 6 16 9 0 15 3 0 16 1 0 43 19 17 53 2 0 9 4 0 12 1 0 9 1 0 20 65 15 287 3 0 46 32 9 23 0 1 32 1 0 53 302 0 29 0 1 209 0 3 92 296 0 82 0 1 220 22 23 28 0 1 25 chain 132495 chr1_gl000191_random 106433 + 62538 64636 SVA_F 1814 - 0 1479 27526 540 129 0 87 1 0 10 1 0 169 228 0 45 0 15 49 2 1 17 0 1 25 1 0 18 274 0 502 chain 3443 chr1_gl000191_random 106433 + 63138 63207 SVA_F 1814 - 649 716 99640 27 1 0 10 1 0 30 chain 2545 chr1_gl000191_random 106433 + 63475 63526 SVA_F 1814 - 919 967 99640 3 1 0 4 1 0 33 1 0 8 chain 7074 chr1_gl000191_random 106433 + 63613 63703 SVA_F 1814 - 540 630 92502 90 chain 8725 chr1_gl000191_random 106433 + 63860 63971 SVA_F 1814 - 737 848 92502 111 chain 5537 chr1_gl000191_random 106433 + 63971 64075 SVA_F 1814 - 912 967 171427 16 48 0 31 1 0 8 chain 614 chr1_gl000191_random 106433 + 63987 64035 SVA_F 1814 - 879 926 176686 37 1 0 10 chain 14481 chr1_gl000191_random 106433 + 82995 83594 MLT1A0 366 + 35 342 142946 44 2 0 58 15 33 25 28 36 33 331 14 18 0 1 45 chain 132661 chr1_gl000191_random 106433 + 101128 102591 SVA_D 2077 - 8 2055 27485 627 0 534 143 0 40 670 0 1 6 0 10 10 1 0 6 chain 40065 chr1_gl000191_random 106433 + 102924 103575 LTR15 485 - 0 483 69226 252 172 0 117 0 4 110 chain 90116 chr19_gl000208_random 92689 + 24901 25940 L1PA2 6032 - 1089 2129 39604 147 0 1 55 1 0 345 1 0 66 7 8 201 0 1 216 chain 95059 chr19_gl000208_random 92689 + 25950 27029 L1PA2 6032 + 4947 6026 38074 137 0 1 605 1 0 336 chain 533775 chr19_gl000208_random 92689 + 29888 35902 L1PA2 6032 - 10 6020 3733 937 0 1 1397 0 1 643 1 0 851 0 1 558 2 0 485 6 0 426 0 1 200 0 1 508 chain 538113 chr19_gl000208_random 92689 + 57442 63461 L1PA2 6032 - 0 6020 3131 2988 0 1 1410 2 0 721 1 0 292 0 2 43 5 7 312 1 0 244 chain 520303 chr19_gl000208_random 92689 + 65282 71296 L1PA3long 6157 + 4 6156 5123 149 16 17 38 0 1 4 1 0 563 0 128 857 2 0 1416 1 0 434 0 1 577 0 1 164 0 4 258 1 5 764 1 0 50 0 1 213 0 1 364 0 1 141 chain 31518 chr9_gl000198_random 90085 + 1408 1774 L1PA3long 6157 - 2 368 81618 366 chain 404313 chr9_gl000198_random 90085 + 63693 68564 L1PA4 6152 + 0 6151 9969 580 1 0 428 0 1 20 12 12 204 0 1 186 1 2 346 0 37 163 0 1217 29 0 1 33 0 2 1267 7 0 105 1 0 118 7 0 389 0 35 824 3 4 147 chain 29182 chr9_gl000198_random 90085 + 76787 77098 AluYa5 310 - 0 310 88137 192 1 0 118 chain 24441 chr17_gl000204_random 81310 + 10971 11264 AluY 311 + 4 295 107855 126 1 2 150 3 0 13 chain 357834 chrUn_gl000233 45941 + 808 5144 L1P1 4361 - 33 4360 11405 23 1 0 155 1 0 898 0 2 73 0 1 495 0 1 758 0 1 179 1 0 895 32 33 107 12 5 128 1 0 339 23 19 215 chain 89359 chrUn_gl000233 45941 + 38417 39498 L1PA5 6144 - 1944 3031 39826 710 0 4 327 1 3 43 chain 161078 chrUn_gl000233 45941 + 39498 41439 L1PA5 6144 + 4179 6135 23181 689 0 4 135 0 1 163 7 13 110 0 8 430 8 0 271 0 4 128 chain 3605 chrUn_gl000237 45867 + 4998 5050 L1PA15-16 3068 - 248 297 213576 5 1 0 13 2 0 31 chain 6326 chrUn_gl000237 45867 + 26924 26997 L1PA3long 6157 + 6084 6157 182588 73 chain 32318 chrUn_gl000237 45867 + 28217 28647 L1PA8 5853 - 19 442 80339 74 1 0 15 8 7 50 1 0 9 2 1 70 2 0 44 1 0 153 chain 7008 chrUn_gl000230 43691 + 3269 3361 Charlie1a 1436 - 249 349 177419 17 0 8 75 chain 56430 chrUn_gl000230 43691 + 7820 8834 MER11A 1151 + 2 1151 54891 33 20 119 34 15 11 41 0 3 31 23 20 21 35 0 173 20 21 173 56 65 69 4 5 13 3 61 97 7 6 15 1 3 49 1 7 13 8 7 59 chain 4528 chrUn_gl000230 43691 + 9638 9726 PRIMA4_LTR 623 - 195 352 200476 19 0 4 16 1 4 6 0 5 11 7 64 28 chain 21694 chrUn_gl000230 43691 + 14781 15055 AluSg7 307 - 23 296 121413 152 1 0 121 chain 161078 chrUn_gl000230 43691 + 27842 29783 L1PA5 6144 - 9 1965 23182 132 0 4 267 8 0 429 0 8 111 7 13 163 0 1 135 0 4 689 chain 89359 chrUn_gl000230 43691 + 29783 30864 L1PA5 6144 + 3113 4200 39825 43 1 3 327 0 4 710 chain 23377 chrUn_gl000242 43523 + 20947 21211 AluSp 311 - 38 302 113773 264 chain 4655 chrUn_gl000242 43523 + 34733 34847 MIR 256 + 29 156 199010 19 26 28 14 12 23 43 chain 3889 chrUn_gl000243 43341 + 9942 9989 MSTA 426 - 237 284 209033 47 chain 9112 chrUn_gl000243 43341 + 10156 10280 MSTA-int 1630 - 19 142 165005 90 6 5 28 chain 82280 chrUn_gl000243 43341 + 14654 15750 L1PA7 6471 + 5369 6468 42640 19 6 0 8 1 7 194 0 6 18 5 0 45 3 4 461 0 1 176 3 5 146 2 0 9 chain 90549 chrUn_gl000243 43341 + 27485 29073 L1PB 1623 - 172 1525 39456 5 1 0 32 2 1 22 190 0 94 14 0 303 4 5 179 27 29 101 0 1 149 13 14 26 43 22 69 2 1 26 2 0 103 2 1 76 7 4 21 4 1 49 1 0 5 1 0 10 1 0 4 chain 277108 chrUn_gl000241 42152 + 5959 9139 L1PA4 6152 - 24 3203 14804 816 4 7 8 7 0 1216 0 1 79 0 3 9 3 0 1026 0 2 12 chain 13339 chrUn_gl000241 42152 + 40823 41030 L1PA16 3655 + 3385 3591 146938 30 5 6 142 16 14 14 chain 18120 chrUn_gl000236 41934 + 0 204 L1PA2 6032 + 5821 6032 132539 63 0 7 141 chain 7330 chrUn_gl000236 41934 + 1877 1964 L1PA8 5853 + 5766 5853 175224 87 chain 6331 chrUn_gl000236 41934 + 9029 9239 MSTB2-int 240 - 7 176 182534 16 37 36 16 26 20 26 1 0 33 33 0 22 chain 299336 chrUn_gl000236 41934 + 11970 17640 L1P2 5180 + 2 3871 13464 148 1 0 24 14 11 9 1 0 53 1 0 158 1 0 102 1 0 8 1 0 39 0 1 66 0 1 32 1 0 3 0 51 75 0 15 139 0 6 502 0 1 99 1954 89 394 1 2 24 10 17 310 0 1 1120 1 0 221 15 6 142 chain 110104 chrUn_gl000236 41934 + 14106 15402 L1P1 4361 - 20 1314 34180 12 2 1 23 1 0 154 1 0 216 1 2 57 0 1 595 1 0 233 chain 272663 chrUn_gl000236 41934 + 33834 36855 L1PA3long 6157 + 3047 6157 15036 309 0 1 647 0 89 1291 1 0 773 chain 529335 chrUn_gl000240 41933 + 25129 31251 L1PA3long 6157 + 1 6142 4264 221 4 0 475 0 7 2077 0 5 379 5 6 126 0 1 1588 9 16 147 1 0 4 0 1 250 7 9 829 chain 23453 chrUn_gl000240 41933 + 32034 33906 MER57-int 2662 + 168 2184 113368 12 0 5 48 0 2 78 2 0 94 1317 1449 19 104 105 63 35 41 20 21 21 59 chain 12164 chr17_gl000206_random 41001 + 2610 2789 HSMAR2 1300 + 3 195 151559 42 17 30 120 chain 74527 chrUn_gl000232 40652 + 2332 3289 LTR5_Hs 974 + 6 974 46250 283 0 1 40 0 1 136 0 1 184 5 4 61 0 4 98 8 15 27 12 10 103 chain 75698 chrUn_gl000232 40652 + 8586 9521 LTR5_Hs 974 - 16 974 45651 47 3 6 30 0 3 409 0 4 200 1 14 245 chain 20032 chrUn_gl000232 40652 + 18144 18387 L1PA7 6471 - 16 260 127037 100 0 1 143 chain 70643 chrUn_gl000232 40652 + 33736 34581 L1PA4 6152 - 4 806 48087 717 42 0 56 1 0 29 chain 3177 chrUn_gl000232 40652 + 40217 40258 L1M3a 1038 + 529 568 221388 28 2 0 11 chain 88941 chrUn_gl000234 40531 + 6926 8387 L1PA7 6471 - 16 1163 40028 101 0 1 142 323 5 62 0 18 116 23 5 386 1 4 307 chain 70584 chrUn_gl000234 40531 + 20667 21512 L1PA3long 6157 - 2 805 48122 718 42 0 85 chain 514064 chrUn_gl000234 40531 + 27767 33875 L1PA4 6152 - 0 6146 5767 5 2 0 148 1 2 178 1 2 642 0 3 543 1 0 817 1 0 303 0 3 260 0 12 69 1 0 396 7 6 355 0 1 187 0 2 688 0 1 285 0 1 735 0 1 48 0 18 435 chain 35578 chr11_gl000202_random 40103 + 38478 39043 L1PB1 5432 - 12 544 75439 16 1 0 13 1 0 21 1 0 24 2 0 14 1 0 5 2 0 30 13 1 16 1 0 44 1 0 15 2 1 50 3 1 10 7 3 9 2 1 12 1 0 20 3 0 8 2 3 215 chain 336834 chrUn_gl000238 39939 + 2735 6986 L1PA8 5853 - 4 4285 11974 89 1 0 17 1 0 55 1 0 9 2 1 70 2 0 44 1 0 119 2 3 432 2 0 58 1 0 618 1 0 144 0 2 541 5 6 180 2 3 129 0 7 120 1 2 312 1 0 25 0 2 5 2 0 60 6 14 92 0 1 4 2 1 199 0 4 17 0 1 151 0 1 270 9 24 80 1 0 29 0 1 339 chain 27003 chrUn_gl000244 39929 + 31777 32265 MER61F 604 + 0 534 96275 21 44 43 22 17 39 183 3 4 33 42 66 123 chain 34473 chrUn_gl000248 39786 + 724 1206 MER1A 529 + 45 521 76951 75 34 29 311 6 5 56 chain 11482 chrUn_gl000248 39786 + 10587 10871 L1PB1 5432 - 151 391 154364 10 3 0 34 1 0 16 2 1 52 2 0 9 21 16 7 1 0 21 11 0 12 51 31 31 chain 4990 chrUn_gl000248 39786 + 26470 26580 MER20 218 + 1 104 195245 19 1 0 8 7 8 44 18 11 13 chain 529739 chr8_gl000196_random 38914 + 3329 9463 L1PA4 6152 + 1 6152 4217 124 39 39 383 0 1 239 1 0 444 1 0 12 2 3 1034 0 1 16 0 1 119 0 1 299 0 1 398 0 1 9 0 4 53 1 0 1168 0 4 845 0 1 103 0 4 351 2 1 4 0 1 336 0 1 3 1 0 147 chain 3786 chr8_gl000196_random 38914 + 17296 17351 L1MD1 2063 - 225 276 210570 17 4 0 34 chain 91887 chr8_gl000196_random 38914 + 18811 19983 MER11A 1151 + 0 1151 39003 121 5 16 39 8 0 54 0 4 60 1 3 5 1 0 22 0 2 359 3 2 118 32 5 52 3 0 289 chain 3334 chrUn_gl000249 38502 + 11915 11954 MADE1 96 + 0 40 218332 5 0 1 34 chain 24492 chrUn_gl000249 38502 + 15631 15916 AluSc5 308 - 23 308 107583 285 chain 504887 chrUn_gl000246 38154 + 25304 31056 L1PA4 6152 - 0 6152 6545 809 4 0 370 2 0 3476 9 7 138 17 430 310 4 0 36 1 0 576 chain 524635 chrUn_gl000245 36651 + 5312 11423 L1PA4 6152 + 15 6152 4712 111 1 15 898 0 1 405 1 2 284 0 1 697 0 3 769 0 1 488 1 0 945 1 0 29 0 1 699 0 1 294 0 1 237 0 1 238 0 3 13 chain 21048 chrUn_gl000245 36651 + 23561 23801 L1PA4 6152 - 12 252 123736 240 chain 13738 chrUn_gl000247 36422 + 6701 7160 MSTA-int 1630 + 23 1611 145475 83 3 0 6 1 0 6 236 1370 28 6 5 90 chain 37079 chrUn_gl000235 34474 + 3720 4175 L1PA5 6144 - 0 456 73417 332 1 2 122 chain 519072 chrUn_gl000235 34474 + 5533 11996 L1PA4 6152 + 0 6143 5256 122 5 19 97 4 0 437 0 1 363 0 1 198 1 0 196 336 0 288 0 1 551 2 1 47 1 0 107 0 3 309 0 1 595 9 0 1011 0 4 875 0 1 401 0 5 249 8 9 251 chain 30165 chrUn_gl000235 34474 + 6968 7286 AluYb8 318 + 0 318 84283 318 chain 20510 chrUn_gl000235 34474 + 24127 24363 L1PA4 6152 - 15 252 125595 140 0 1 96 chain 6326 chrUn_gl000239 33824 + 8485 8558 L1PA3long 6157 + 6084 6157 182587 73 chain 32318 chrUn_gl000239 33824 + 9784 10214 L1PA8 5853 - 19 442 80338 74 1 0 15 8 7 50 1 0 9 2 1 70 2 0 44 1 0 153 chain 16503 chrUn_gl000231 27386 + 2163 2336 AluYa5 310 - 8 181 136909 173 chain 519091 chrUn_gl000231 27386 + 3030 9179 L1PA4 6152 - 0 6149 5254 153 1 2 285 0 1 351 0 3 352 0 1 1192 1 0 134 8 0 170 0 1 240 0 2 1235 1 0 782 5 4 84 2 0 5 0 2 112 0 2 420 0 6 6 11 5 599 chain 86388 chrUn_gl000231 27386 + 22478 23506 LTR5A 1029 + 0 1029 41006 78 0 2 68 2 1 880 chain 25081 chrUn_gl000231 27386 + 23960 24254 AluYk4 311 - 16 311 104401 145 7 8 142 chain 29444 chrUn_gl000231 27386 + 25623 25971 L1PA4 6152 - 1 357 86876 138 1 8 197 0 1 12 chain 29444 chrUn_gl000229 19913 + 237 585 L1PA4 6152 - 1 357 86877 138 1 8 197 0 1 12